1290 84 6 0 chr6 4 182 -189279372 + MER4E LTR ERV1 588 766 0 2113 141 33 25 chr6 197 558 -189278996 - THE1B LTR MaLR 0 364 1 1564 260 101 24 chr6 867 1629 -189277925 + HAL1 LINE L1 1681 2501 -6 185 273 171 23 chr6 3283 3371 -189276183 + L2 LINE L2 3166 3266 -6 2355 99 0 10 chr6 4049 4361 -189275193 - AluSc SINE Alu 0 309 1 3022 208 118 84 chr6 4892 6055 -189273499 + L1M4 LINE L1 830 2064 -4580 1100 79 22 11 chr6 6055 6233 -189273321 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3022 208 118 84 chr6 6233 7045 -189272509 + L1M4 LINE L1 2064 2847 -3797 3186 88 31 2 chr6 7305 7758 -189271796 - L1PA10 LINE L1 -5 6163 5698 393 95 0 0 chr6 7823 7886 -189271668 + (TA)n Simple_repeat Simple_repeat 2 64 0 2205 140 88 25 chr6 7888 8296 -189271258 + Tigger2a DNA MER2_type 1 434 0 465 283 82 22 chr6 9127 9311 -189270243 + L2 LINE L2 3118 3312 -1 1016 283 134 27 chr6 10661 10935 -189268619 - L2 LINE L2 -1 3312 3069 6673 38 48 0 chr6 10935 11769 -189267785 + L1PA5 LINE L1 5273 6146 -8 1016 283 134 27 chr6 11769 12221 -189267333 - L2 LINE L2 -244 3069 2533 905 275 94 54 chr6 12505 13080 -189266474 - L1M4 LINE L1 -2580 3566 2969 1947 200 70 8 chr6 13082 13551 -189266003 - Tigger5 DNA MER2_type 0 2323 1826 962 218 18 65 chr6 13542 13677 -189265877 - Tigger5 DNA MER2_type -200 218 97 * 2281 79 3 7 chr6 13677 13969 -189265585 - AluSc SINE Alu -14 295 5 962 218 18 65 chr6 13969 14062 -189265492 - Tigger5 DNA MER2_type -321 97 1 3173 204 8 3 chr6 14139 14920 -189264634 - L1P LINE L1 -843 5308 4523 656 310 51 66 chr6 14918 15873 -189263681 - L1PA12 LINE L1 -5691 1890 950 * 1516 222 23 21 chr6 15878 16311 -189263243 - L1M4 LINE L1 -3552 2594 2161 22 0 0 0 chr6 16314 16336 -189263218 + AT_rich Low_complexity Low_complexity 1 22 0 821 197 0 0 chr6 16341 16483 -189263071 - FLAM_C SINE Alu -1 142 1 245 77 19 58 chr6 16485 16537 -189263017 - L1M2 LINE L1 -3971 2878 2829 * 376 254 51 30 chr6 16533 16828 -189262726 - L1MC5 LINE L1 -315 7882 7582 21 57 0 0 chr6 17331 17366 -189262188 + AT_rich Low_complexity Low_complexity 1 35 0 769 229 139 28 chr6 17382 17569 -189261985 - L1MC5 LINE L1 -1866 6178 6013 2250 129 0 0 chr6 17569 17879 -189261675 - AluSx SINE Alu -2 310 1 769 229 139 28 chr6 17879 18079 -189261475 - L1MC5 LINE L1 -2031 6013 5748 * 14510 28 0 0 chr6 18074 19874 -189259680 - L1PA3 LINE L1 -1036 5110 3311 7632 26 2 0 chr6 19876 20924 -189258630 + L1PA3 LINE L1 5105 6155 0 399 224 32 45 chr6 20929 21085 -189258469 - L1MC5 LINE L1 -2283 5761 5608 3720 178 6 1 chr6 21094 21763 -189257791 + L1PA16 LINE L1 5491 6162 -4 2783 62 11 0 chr6 21874 22246 -189257308 - L1PA7 LINE L1 -364 5790 5415 2671 67 15 0 chr6 22246 22587 -189256967 + L1PA7 LINE L1 5805 6150 -4 235 167 45 0 chr6 22613 22679 -189256875 + L1MCa LINE L1 1995 2063 -4363 229 192 0 0 chr6 22637 22689 -189256865 - L1MC4 LINE L1 -1339 6703 6652 * 7177 228 115 35 chr6 23348 24382 -189255172 - L1MC5 LINE L1 -805 5577 4627 189 0 0 0 chr6 24382 24403 -189255151 + (TG)n Simple_repeat Simple_repeat 2 22 0 7177 228 115 35 chr6 24403 24518 -189255036 - L1MC5 LINE L1 -1755 4627 4523 315 215 13 0 chr6 24518 24597 -189254957 + MLT1A2 LTR MaLR 1 80 -294 7177 228 115 35 chr6 24597 25076 -189254478 - L1MC5 LINE L1 -1859 4523 4084 243 0 0 0 chr6 25076 25103 -189254451 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 7177 228 115 35 chr6 25103 25155 -189254399 - L1MC5 LINE L1 -2298 4084 4038 2177 92 0 0 chr6 25155 25428 -189254126 - AluSx SINE Alu 0 312 40 7177 228 115 35 chr6 25428 27236 -189252318 - L1MC5 LINE L1 -2344 4038 1716 1175 129 119 61 chr6 27236 27546 -189252008 - L1MC5 LINE L1 -5052 1332 1005 223 146 42 0 chr6 27546 27594 -189251960 + (TA)n Simple_repeat Simple_repeat 2 51 0 24 53 0 0 chr6 27717 27755 -189251799 + AT_rich Low_complexity Low_complexity 1 38 0 778 193 0 0 chr6 27755 27895 -189251659 - L1MC5 LINE L1 -5709 675 536 627 215 0 20 chr6 27902 28051 -189251503 - L1MC5 LINE L1 -6217 167 22 186 103 0 0 chr6 28250 28279 -189251275 + (G)n Simple_repeat Simple_repeat 1 29 0 3302 240 41 14 chr6 28453 29498 -189250056 - L1M4 LINE L1 -1480 4666 3594 326 134 149 0 chr6 29496 29563 -189249991 + L1MB4 LINE L1 5807 5883 -297 * 361 213 64 0 chr6 29576 29670 -189249884 - L1M4 LINE L1 -2553 3593 3494 1604 161 85 55 chr6 29706 29737 -189249817 - L1MB4 LINE L1 -21 6159 6130 2422 93 0 0 chr6 29737 30038 -189249516 - AluSx SINE Alu -11 301 1 1604 161 85 55 chr6 30038 30428 -189249126 - L1MB4 LINE L1 -50 6130 5725 362 186 41 21 chr6 30491 30588 -189248966 - L1MCc LINE L1 -5142 1281 1183 1054 229 92 19 chr6 30595 31019 -189248535 - L1MCc LINE L1 -5184 1239 785 716 160 80 0 chr6 31036 31211 -189248343 - MER53 DNA DNA 0 189 1 446 294 73 29 chr6 31721 31993 -189247561 - L1MCc LINE L1 -6086 337 54 827 180 77 0 chr6 32681 32875 -189246679 - MLT1B LTR MaLR -81 309 101 2520 81 0 0 chr6 32963 33270 -189246284 - AluY SINE Alu -4 307 1 230 323 115 54 chr6 33622 34256 -189245298 + L2 LINE L2 2305 2977 -337 343 267 200 13 chr6 34311 34461 -189245093 + MIR SINE MIR 29 206 -56 225 269 0 0 chr6 34488 34540 -189245014 - MIR SINE MIR -25 237 186 212 343 30 20 chr6 34518 34617 -189244937 + L2 LINE L2 2979 3078 -194 * 1264 174 72 33 chr6 34846 35179 -189244375 - MLT1B LTR MaLR -31 359 3 390 210 12 0 chr6 36964 37045 -189242509 + L2 LINE L2 3190 3271 -1 463 247 0 0 chr6 37716 37809 -189241745 + MER81 DNA DNA 2 94 -20 2144 125 0 3 chr6 38933 39230 -189240324 + AluSx SINE Alu 1 296 -16 29 0 0 0 chr6 39376 39405 -189240149 + AT_rich Low_complexity Low_complexity 1 29 0 300 20 61 0 chr6 40636 40685 -189238869 + (TC)n Simple_repeat Simple_repeat 2 53 0 255 243 135 36 chr6 40900 41011 -189238543 - L2 LINE L2 -10 3262 3141 763 225 31 0 chr6 41785 41945 -189237609 + MER20 DNA MER1_type 55 219 0 2302 88 0 0 chr6 42609 42904 -189236650 - AluSx SINE Alu -17 295 1 22 0 0 0 chr6 42910 42932 -189236622 + AT_rich Low_complexity Low_complexity 1 22 0 230 341 40 74 chr6 43315 43491 -189236063 - MIR3 SINE MIR -26 182 13 479 323 183 34 chr6 43843 44286 -189235268 - L2 LINE L2 0 3313 2805 308 232 158 0 chr6 44281 44376 -189235178 - L2 LINE L2 0 3313 3204 * 423 299 176 25 chr6 47183 47507 -189232047 - L1ME4a LINE L1 -5 6116 5744 307 351 114 8 chr6 47564 47695 -189231859 - L2 LINE L2 -28 3244 3100 198 50 75 0 chr6 47844 47884 -189231670 + CT-rich Low_complexity Low_complexity 5 47 0 359 270 81 0 chr6 49096 49207 -189230347 + MER34B LTR ERV1 5 124 -441 387 283 23 45 chr6 49304 49569 -189229985 + MER34B LTR ERV1 304 562 -3 338 222 36 82 chr6 49631 49825 -189229729 + MER34B-int LTR ERV1 69 253 -6078 340 191 43 21 chr6 50170 50264 -189229290 + MER34B-int LTR ERV1 1299 1394 -4937 3057 139 33 4 chr6 50359 50878 -189228676 - MSTA-int LTR MaLR -1117 534 1 2549 150 26 5 chr6 50878 51297 -189228257 - MSTA LTR MaLR 0 428 1 7918 187 52 43 chr6 51297 53297 -189226257 + MER34B-int LTR ERV1 4314 6331 0 261 193 174 73 chr6 53301 53410 -189226144 + MER34B LTR ERV1 5 124 -441 22 35 0 0 chr6 56463 56492 -189223062 + AT_rich Low_complexity Low_complexity 1 29 0 206 225 0 0 chr6 56587 56627 -189222927 + L2 LINE L2 3229 3268 -4 1101 133 0 44 chr6 57960 58141 -189221413 + AluSg/x SINE Alu 140 312 0 23 0 0 0 chr6 59002 59025 -189220529 + AT_rich Low_complexity Low_complexity 1 23 0 2454 90 0 0 chr6 59197 59498 -189220056 - AluSg SINE Alu -9 301 1 183 80 0 0 chr6 59971 59996 -189219558 + (CCCTAA)n Simple_repeat Simple_repeat 5 29 0 2025 128 0 7 chr6 62726 63007 -189216547 - AluSx SINE Alu -33 279 1 350 305 32 7 chr6 64458 64612 -189214942 - MER103 DNA DNA -1 165 8 539 245 111 67 chr6 64901 64938 -189214616 + L1ME4a LINE L1 5852 5886 -235 225 0 0 0 chr6 64938 64963 -189214591 + (TG)n Simple_repeat Simple_repeat 2 26 0 539 245 111 67 chr6 64963 65178 -189214376 + L1ME4a LINE L1 5886 6115 -6 24 53 0 0 chr6 66235 66273 -189213281 + AT_rich Low_complexity Low_complexity 1 38 0 291 297 145 22 chr6 67157 67295 -189212259 - MIR3 SINE MIR -28 180 26 432 329 7 7 chr6 70136 70273 -189209281 + MER5A DNA MER1_type 44 180 -9 1322 169 99 51 chr6 70922 71195 -189208359 - AluJo SINE Alu -20 292 7 224 293 12 49 chr6 71732 71896 -189207658 + GA-rich Low_complexity Low_complexity 1 158 0 21 36 0 0 chr6 72195 72223 -189207331 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 72281 72302 -189207252 + GC_rich Low_complexity Low_complexity 1 21 0 3737 155 22 10 chr6 73774 74466 -189205088 - L1MB3 LINE L1 -1 6182 5483 358 331 25 13 chr6 74641 74798 -189204756 - MIR SINE MIR -102 160 2 352 299 80 7 chr6 75047 75184 -189204370 - MIR SINE MIR -45 217 71 324 274 202 0 chr6 75242 75366 -189204188 + MIR SINE MIR 106 254 -8 1159 199 50 66 chr6 75371 75733 -189203821 - MLT1A2 LTR MaLR 0 374 19 28 29 0 0 chr6 75857 75892 -189203662 + AT_rich Low_complexity Low_complexity 1 35 0 2105 145 0 0 chr6 75991 76281 -189203273 - AluSx SINE Alu -22 290 1 22 35 0 0 chr6 76376 76405 -189203149 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr6 77156 77183 -189202371 + (T)n Simple_repeat Simple_repeat 1 27 0 7894 146 98 28 chr6 78847 80434 -189199120 - pTR5 LTR ERV1 0 2438 741 963 236 106 7 chr6 80683 80967 -189198587 - MER63 DNA MER1_type -74 986 675 247 328 74 16 chr6 82942 83064 -189196490 - L3 LINE CR1 -467 1110 982 702 223 37 115 chr6 83901 84257 -189195297 - MER33 DNA MER1_type -6 318 1 203 331 70 21 chr6 84274 84416 -189195138 + MIR SINE MIR 43 191 -71 462 178 0 40 chr6 84722 84823 -189194731 + L1MC2 LINE L1 6248 6344 0 480 241 14 148 chr6 84828 85044 -189194510 - MER91B DNA MER1_type -2 188 2 1085 143 26 0 chr6 86151 86340 -189193214 - L1PA16 LINE L1 -9 6157 5964 1223 231 21 37 chr6 86572 87087 -189192467 + L1ME1 LINE L1 5327 5997 -169 1994 126 7 37 chr6 87200 87521 -189192033 + AluSx SINE Alu 1 312 0 4190 142 80 40 chr6 88454 89772 -189189782 - pTR5 LTR ERV1 0 2438 743 232 241 215 0 chr6 90923 91002 -189188552 + MARNA DNA Mariner 295 390 -196 2714 178 21 55 chr6 91104 91727 -189187827 - L1MB3 LINE L1 -20 6163 5562 483 261 112 2 chr6 92269 92436 -189187118 - MIR SINE MIR -51 157 17 221 215 0 13 chr6 93948 94027 -189185527 + CT-rich Low_complexity Low_complexity 2 79 0 * 601 151 30 0 chr6 94008 94174 -189185380 + (CATCC)n Simple_repeat Simple_repeat 2 172 0 475 158 39 0 chr6 94207 94334 -189185220 + (CATCC)n Simple_repeat Simple_repeat 4 135 0 812 114 25 0 chr6 94361 94519 -189185035 + (CATCC)n Simple_repeat Simple_repeat 5 166 0 461 154 9 0 chr6 94535 94645 -189184909 + (CATCC)n Simple_repeat Simple_repeat 3 113 0 267 315 23 39 chr6 94779 94909 -189184645 + MLT1I LTR MaLR 59 186 -223 2173 109 3 3 chr6 96399 96701 -189182853 - AluSx SINE Alu -10 302 1 1419 130 0 0 chr6 97994 98219 -189181335 + AluSg/x SINE Alu 91 315 0 218 302 190 9 chr6 98352 98468 -189181086 + MIR SINE MIR 59 195 -67 1536 191 34 49 chr6 101884 101940 -189177614 + MLT1B LTR MaLR 1 56 -334 2109 121 119 16 chr6 101940 102327 -189177227 + MSTC LTR MaLR 1 427 -1 1536 191 34 49 chr6 102327 102658 -189176896 + MLT1B LTR MaLR 56 382 -8 195 250 96 0 chr6 102695 102747 -189176807 - MIR3 SINE MIR -34 174 118 309 284 11 11 chr6 103138 103233 -189176321 - L2 LINE L2 -769 2545 2451 5451 128 25 22 chr6 103481 104670 -189174884 + pTR5 LTR ERV1 743 2088 -350 258 275 126 62 chr6 105622 105978 -189173576 - MLT1J2 LTR MaLR -19 431 53 2291 114 0 6 chr6 106944 107259 -189172295 + AluSq SINE Alu 1 313 0 309 244 52 44 chr6 107472 107607 -189171947 - L1ME4a LINE L1 -31 6090 5955 353 311 156 24 chr6 107656 107868 -189171686 - L1ME4a LINE L1 -252 5869 5630 200 327 100 0 chr6 109371 109481 -189170073 + L2 LINE L2 3190 3310 -3 500 354 48 9 chr6 109487 109716 -189169838 + L3 LINE CR1 1240 1477 -100 3988 144 36 14 chr6 109765 110537 -189169017 + L1MA9 LINE L1 5521 6309 -3 1772 263 121 24 chr6 110615 111645 -189167909 + L1MCc LINE L1 814 1983 -4958 217 49 0 49 chr6 111645 111686 -189167868 + (CA)n Simple_repeat Simple_repeat 2 40 0 1772 263 121 24 chr6 111686 111816 -189167738 + L1MCc LINE L1 1983 2099 -4842 665 218 8 0 chr6 111828 111961 -189167593 + Tigger7 DNA MER2_type 37 170 -2317 612 156 88 47 chr6 111966 112128 -189167426 + Tigger7 DNA MER2_type 2209 2382 -105 1044 215 102 93 chr6 112128 112589 -189166965 + MER4C LTR ERV1 1 465 0 612 156 88 47 chr6 112589 112618 -189166936 + Tigger7 DNA MER2_type 2382 2408 -79 331 296 37 0 chr6 112691 112799 -189166755 + Tigger7 DNA MER2_type 2370 2481 -6 312 307 57 45 chr6 112804 113068 -189166486 + L1MCc LINE L1 2297 2563 -4559 5978 88 20 18 chr6 113073 114172 -189165382 + L1PA8 LINE L1 5061 6168 -4 297 248 116 33 chr6 114176 114297 -189165257 + L1MCc LINE L1 2609 2739 -4383 2402 148 27 0 chr6 114297 114708 -189164846 + MSTA LTR MaLR 5 426 -2 6704 166 18 3 chr6 114708 115852 -189163702 + MSTA-int LTR MaLR 1 1161 -490 2273 177 55 39 chr6 115878 116184 -189163370 + MER6 DNA MER2_type 60 378 -487 2329 86 7 7 chr6 116184 116488 -189163066 + AluSc SINE Alu 5 308 -1 2273 177 55 39 chr6 116488 116673 -189162881 + MER6 DNA MER2_type 378 559 -306 1736 144 37 3 chr6 116864 117163 -189162391 + MER6 DNA MER2_type 557 865 0 3837 235 69 21 chr6 117164 118423 -189161131 + L1MCc LINE L1 3397 4716 -2225 265 284 196 0 chr6 119763 119865 -189159689 - MIR SINE MIR -54 208 87 439 226 29 80 chr6 120637 120774 -189158780 - pTR5 LTR ERV1 -2045 393 264 201 188 47 16 chr6 121272 121336 -189158218 + (CTGGGG)n Simple_repeat Simple_repeat 1 66 0 22 0 0 0 chr6 121358 121380 -189158174 + GC_rich Low_complexity Low_complexity 1 22 0 1810 81 146 0 chr6 122109 122370 -189157184 + AluSx SINE Alu 1 299 -13 472 262 25 8 chr6 122881 123003 -189156551 - L2 LINE L2 0 3313 3190 248 298 155 25 chr6 124182 124343 -189155211 + MIR SINE MIR 80 261 -1 315 312 28 0 chr6 125884 125993 -189153561 - MLT1I LTR MaLR -174 235 124 1737 239 73 14 chr6 126245 126763 -189152791 + MER44D DNA MER2_type 1 604 -1 687 343 92 13 chr6 127039 127418 -189152136 - LTR16A LTR ERVL -25 425 17 786 127 19 38 chr6 127524 127682 -189151872 + MER53 DNA DNA 1 155 -34 635 281 22 17 chr6 128297 128528 -189151026 - HERV16 LTR ERVL -3883 1113 882 208 351 35 9 chr6 134220 134334 -189145220 + L2 LINE L2 3197 3313 0 468 301 127 9 chr6 134460 134673 -189144881 + L1ME4a LINE L1 5688 5925 -196 1846 111 53 4 chr6 135027 135289 -189144265 - AluSg SINE Alu -2 308 34 3640 171 56 8 chr6 136173 136910 -189142644 - L1MA8 LINE L1 -6 6285 5514 2484 82 0 22 chr6 137279 137595 -189141959 - AluSc SINE Alu 0 309 1 2200 254 89 7 chr6 137688 138386 -189141168 - L1MC4a LINE L1 -307 7501 6747 194 270 0 32 chr6 139746 139809 -189139745 - L2 LINE L2 -20 3293 3233 327 264 72 1 chr6 139850 140023 -189139531 - L1MC3 LINE L1 -759 7026 6808 291 256 128 0 chr6 140345 140431 -189139123 + MIR SINE MIR 166 262 0 452 243 3 5 chr6 140431 141043 -189138511 + (CTG)n Simple_repeat Simple_repeat 1 611 0 495 235 0 0 chr6 141068 141349 -189138205 + (CTG)n Simple_repeat Simple_repeat 1 281 0 504 232 0 0 chr6 141361 141538 -189138016 + (CTG)n Simple_repeat Simple_repeat 2 178 0 462 245 0 0 chr6 141553 141847 -189137707 + (CTG)n Simple_repeat Simple_repeat 1 294 0 459 237 0 0 chr6 141862 142039 -189137515 + (CTG)n Simple_repeat Simple_repeat 2 178 0 471 248 0 0 chr6 142054 142381 -189137173 + (CTG)n Simple_repeat Simple_repeat 1 327 0 507 233 0 0 chr6 142396 142656 -189136898 + (CTG)n Simple_repeat Simple_repeat 1 260 0 456 237 0 0 chr6 142670 142843 -189136711 + (CTG)n Simple_repeat Simple_repeat 2 174 0 326 287 11 0 chr6 142844 142938 -189136616 + (CTA)n Simple_repeat Simple_repeat 2 96 0 317 316 105 26 chr6 143611 143877 -189135677 + Charlie7 DNA MER1_type 400 686 -1926 835 181 18 0 chr6 144499 144670 -189134884 - L1MA8 LINE L1 -69 6222 6049 272 141 99 14 chr6 144666 144737 -189134817 + L1MA8 LINE L1 6209 6285 -6 * 2123 117 0 0 chr6 144999 145289 -189134265 + AluSc SINE Alu 1 290 -19 416 259 43 9 chr6 146007 146123 -189133431 + MIR SINE MIR 32 151 -111 214 246 17 39 chr6 146225 146404 -189133150 + (TATG)n Simple_repeat Simple_repeat 4 178 0 426 338 12 12 chr6 146450 146610 -189132944 + (TG)n Simple_repeat Simple_repeat 1 160 0 728 200 92 0 chr6 147739 147934 -189131620 - MER20 DNA MER1_type -6 213 1 1131 231 60 36 chr6 147995 148312 -189131242 + L1MB7 LINE L1 5812 6141 -43 1929 91 4 0 chr6 148312 148554 -189131000 - AluSp SINE Alu -10 303 61 1131 231 60 36 chr6 148554 148600 -189130954 + L1MB7 LINE L1 6141 6184 0 315 0 0 0 chr6 149091 149126 -189130428 + (A)n Simple_repeat Simple_repeat 1 35 0 347 325 162 0 chr6 155988 156179 -189123375 + MIR SINE MIR 33 254 -8 2291 109 0 3 chr6 157246 157549 -189122005 - AluSq SINE Alu -11 302 1 2042 146 0 0 chr6 158732 159012 -189120542 + AluSx SINE Alu 1 280 -32 1736 142 110 23 chr6 160385 160695 -189118859 - MER1B DNA MER1_type 0 337 1 472 298 7 0 chr6 164557 164708 -189114846 + (CA)n Simple_repeat Simple_repeat 1 152 0 231 287 20 31 chr6 166652 166771 -189112783 - MER5B DNA MER1_type -1 177 71 219 304 0 0 chr6 167340 167409 -189112145 - MIR SINE MIR 0 262 194 315 0 0 0 chr6 167447 167482 -189112072 + (TG)n Simple_repeat Simple_repeat 2 36 0 996 155 23 76 chr6 168159 168402 -189111152 - L1MA6 LINE L1 0 6300 6071 2140 96 45 3 chr6 168402 168694 -189110860 + AluSx SINE Alu 1 304 -8 996 155 23 76 chr6 168694 168714 -189110840 - L1MA6 LINE L1 -229 6071 6051 197 319 14 14 chr6 169166 169238 -189110316 + MIR SINE MIR 43 114 -94 1799 179 3 16 chr6 169321 169629 -189109925 + AluJb SINE Alu 1 304 -8 267 306 0 0 chr6 170197 170269 -189109285 + (CA)n Simple_repeat Simple_repeat 1 72 0 226 267 163 0 chr6 170617 170703 -189108851 + Charlie8 DNA MER1_type 4 103 -2314 242 279 163 0 chr6 171324 171410 -189108144 - Charlie8 DNA MER1_type -2314 103 4 238 220 250 20 chr6 174543 174643 -189104911 - MIR SINE MIR -50 212 90 775 188 7 0 chr6 176126 176270 -189103284 + L1PB4 LINE L1 6000 6144 -12 208 229 84 48 chr6 176612 176695 -189102859 - MIR SINE MIR -120 142 57 1276 216 25 9 chr6 178088 178403 -189101151 + MER33 DNA MER1_type 5 324 0 231 302 54 20 chr6 180224 180373 -189099181 + LTR67 LTR ERVL 400 553 -4 194 222 0 22 chr6 181759 181804 -189097750 + L2 LINE L2 3223 3266 -6 1157 155 52 44 chr6 182196 182230 -189097324 - L1MB3 LINE L1 -9 6174 6142 2278 99 7 3 chr6 182230 182522 -189097032 + AluSg SINE Alu 1 293 -17 1157 155 52 44 chr6 182522 182739 -189096815 - L1MB3 LINE L1 -41 6142 5921 253 314 108 0 chr6 184890 184992 -189094562 + MER58B DNA MER1_type 189 301 -40 209 217 14 72 chr6 185241 185310 -189094244 + MIR SINE MIR 191 255 -7 300 53 0 0 chr6 188781 188819 -189090735 + (CA)n Simple_repeat Simple_repeat 2 39 0 279 221 53 18 chr6 189878 189991 -189089563 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 261 279 15 0 chr6 189999 190067 -189089487 + L2 LINE L2 2221 2289 -1025 505 292 64 52 chr6 190242 190475 -189089079 - L1M4 LINE L1 -3659 2487 2252 226 368 78 32 chr6 190480 190763 -189088791 + L2 LINE L2 2524 2819 -495 212 250 0 0 chr6 191123 191167 -189088387 + L2 LINE L2 3262 3305 -8 21 0 0 0 chr6 192893 192914 -189086640 + AT_rich Low_complexity Low_complexity 1 21 0 449 324 48 2 chr6 193072 193323 -189086231 - L1MC4a LINE L1 -304 5817 5664 182 274 0 0 chr6 195807 195858 -189083696 + MIR SINE MIR 31 81 -181 208 246 101 14 chr6 196215 196284 -189083270 + L2 LINE L2 3235 3309 -4 369 319 9 9 chr6 196406 196522 -189083032 + L1ME4a LINE L1 5493 5608 -513 196 352 63 13 chr6 196581 196740 -189082814 + MIR3 SINE MIR 29 195 -13 22 0 0 0 chr6 199064 199086 -189080468 + AT_rich Low_complexity Low_complexity 1 22 0 2707 36 0 0 chr6 200347 200651 -189078903 - AluY SINE Alu -7 304 1 900 247 109 31 chr6 200694 201107 -189078447 + LTR56 LTR ERV1 1 445 0 23 0 0 0 chr6 201299 201322 -189078232 + AT_rich Low_complexity Low_complexity 1 23 0 2043 129 0 7 chr6 201789 202114 -189077440 + AluSx SINE Alu 1 312 0 336 264 112 0 chr6 202123 202248 -189077306 + L1ME4a LINE L1 5813 5951 -170 360 0 0 0 chr6 202328 202368 -189077186 + (TG)n Simple_repeat Simple_repeat 2 41 0 183 219 49 0 chr6 202436 202477 -189077077 - MER5A DNA MER1_type -105 84 42 327 300 36 21 chr6 202708 202848 -189076706 + LTR56 LTR ERV1 1 142 -303 582 225 23 0 chr6 203242 203371 -189076183 - L1MB7 LINE L1 -13 6171 6040 261 252 17 9 chr6 204680 204795 -189074759 + GA-rich Low_complexity Low_complexity 2 117 0 201 271 0 0 chr6 205412 205460 -189074094 + L2 LINE L2 3266 3313 0 258 208 65 13 chr6 205746 205823 -189073731 + L1MB3 LINE L1 5574 5654 -467 2415 171 27 5 chr6 206923 207367 -189072187 + L1MB3 LINE L1 5729 6182 -1 187 234 52 52 chr6 208105 208182 -189071372 - MER5A DNA MER1_type 0 189 113 439 189 189 33 chr6 208978 209246 -189070308 + MER31B LTR ERV1 4 389 -77 230 279 0 15 chr6 209227 209295 -189070259 + MER67D LTR ERV1 440 506 -8 * 193 277 11 53 chr6 209413 209507 -189070047 - L2 LINE L2 -43 3229 3140 22 56 0 0 chr6 210094 210130 -189069424 + AT_rich Low_complexity Low_complexity 1 36 0 315 254 296 14 chr6 211043 211256 -189068298 + LTR67 LTR ERVL 277 549 -8 210 305 160 25 chr6 211530 211730 -189067824 + L2 LINE L2 2597 2823 -491 329 250 10 21 chr6 211861 211957 -189067597 - Charlie8 DNA MER1_type -2298 119 25 194 219 344 44 chr6 212965 213125 -189066429 + L2 LINE L2 2931 3138 -175 212 328 16 0 chr6 213173 213234 -189066320 + L2 LINE L2 3172 3233 -39 919 215 75 5 chr6 214357 214557 -189064997 + MER20 DNA MER1_type 2 215 -4 222 175 38 138 chr6 214736 214816 -189064738 - MIR SINE MIR -70 192 121 202 261 46 31 chr6 214803 214868 -189064686 + MIR3 SINE MIR 140 205 -3 * 249 203 55 78 chr6 215097 215225 -189064329 - 7SK RNA RNA -68 125 1 437 242 93 43 chr6 215574 215735 -189063819 + MIR SINE MIR 7 175 -87 203 324 176 7 chr6 216064 216200 -189063354 + MIR SINE MIR 63 221 -41 1784 151 0 77 chr6 216224 216548 -189063006 - AluJb SINE Alu -13 299 1 1307 144 40 104 chr6 217274 217620 -189061934 + MER33 DNA MER1_type 1 324 0 217 288 0 0 chr6 217684 217743 -189061811 + L2 LINE L2 3246 3304 -9 189 0 0 0 chr6 218223 218244 -189061310 + (A)n Simple_repeat Simple_repeat 1 21 0 2808 223 64 11 chr6 219917 220792 -189058762 + L1M4 LINE L1 2334 3254 -2892 882 249 75 59 chr6 220792 221109 -189058445 + L1M4 LINE L1 4838 5155 -991 627 269 35 101 chr6 221122 221695 -189057859 + L1MC4a LINE L1 6049 6583 -1225 207 222 42 14 chr6 221739 221811 -189057743 + (TA)n Simple_repeat Simple_repeat 2 75 0 451 299 61 19 chr6 221911 222175 -189057379 + L1MC5 LINE L1 7251 7525 -436 264 242 64 57 chr6 222287 222425 -189057129 + L1ME3 LINE L1 5979 6126 -38 23 65 0 16 chr6 223048 223081 -189056473 + AT_rich Low_complexity Low_complexity 1 34 -27 414 43 0 0 chr6 223081 223128 -189056426 - L1PA6 LINE L1 -8 6146 6100 23 65 0 16 chr6 223128 223156 -189056398 + AT_rich Low_complexity Low_complexity 34 61 0 353 371 103 23 chr6 224069 224371 -189055183 - L2 LINE L2 -23 3249 2924 25 31 0 0 chr6 224479 224511 -189055043 + AT_rich Low_complexity Low_complexity 1 32 0 2295 45 15 0 chr6 224571 224837 -189054717 - L1PA5 LINE L1 -4 6150 5881 293 385 60 26 chr6 224840 225074 -189054480 - L2 LINE L2 -606 2708 2467 795 190 92 6 chr6 225323 225486 -189054068 + AluSp SINE Alu 123 299 -14 873 297 60 39 chr6 225662 226097 -189053457 - L1ME3A LINE L1 -219 5951 5508 186 43 0 0 chr6 226132 226155 -189053399 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4150 207 28 31 chr6 226155 227169 -189052385 - L1 LINE L1 -1449 4697 3687 1275 278 67 38 chr6 227219 227979 -189051575 - L1ME3A LINE L1 -2027 4119 3338 7333 154 30 11 chr6 227994 228125 -189051429 - L1MA8 LINE L1 -53 6238 6111 5229 107 18 1 chr6 228125 228854 -189050700 + L1MA2 LINE L1 5556 6303 -1 7333 154 30 11 chr6 228854 230836 -189048718 - L1MA8 LINE L1 -180 6111 4083 1995 214 76 15 chr6 230990 231466 -189048088 + LTR22 LTR ERVK 1 505 -4 6351 181 2 7 chr6 231506 232540 -189047014 + L1PA15-16 LINE L1 2 1030 -5819 2763 111 24 0 chr6 232540 232953 -189046601 + L1P4 LINE L1 5268 5690 -478 2118 128 0 0 chr6 232955 233245 -189046309 + AluSq SINE Alu 1 290 -23 374 121 15 0 chr6 233245 233311 -189046243 + (TA)n Simple_repeat Simple_repeat 2 68 0 228 159 0 0 chr6 233313 233357 -189046197 - LTR66 LTR ERVL -169 441 398 2395 121 17 15 chr6 233376 233847 -189045707 + L1PA8 LINE L1 5648 6077 -77 349 198 83 10 chr6 233826 233922 -189045632 + L1PA8 LINE L1 5946 6048 -124 * 351 214 61 10 chr6 233901 233999 -189045555 + L1PA8 LINE L1 5946 6048 -124 * 367 204 61 10 chr6 233978 234076 -189045478 + L1PA8 LINE L1 5946 6048 -124 346 214 61 10 chr6 234055 234153 -189045401 + L1PA8 LINE L1 5946 6048 -124 * 339 214 71 10 chr6 234132 234230 -189045324 + L1PA8 LINE L1 5946 6049 -123 * 335 239 61 10 chr6 234208 234382 -189045172 + L1PA8 LINE L1 5927 6048 -124 * 357 167 62 42 chr6 234361 234438 -189045116 + L1PA8 LINE L1 5946 6027 -145 1435 134 28 0 chr6 234438 234654 -189044900 + L1PA10 LINE L1 5946 6167 -1 357 167 62 42 chr6 234654 234672 -189044882 + L1PA8 LINE L1 6027 6043 -129 585 236 82 73 chr6 234679 235116 -189044438 - L1MEd LINE L1 -4971 1148 708 309 261 23 11 chr6 235123 235211 -189044343 + GA-rich Low_complexity Low_complexity 3 91 0 819 51 0 0 chr6 235297 235395 -189044159 + L1PA5 LINE L1 6055 6152 -2 3171 205 73 11 chr6 235842 236672 -189042882 + L1 LINE L1 2939 3820 -2326 467 273 86 0 chr6 236679 236818 -189042736 + ERVL LTR ERVL 1690 1840 -3924 1847 224 33 0 chr6 236831 237290 -189042264 + L1MA7 LINE L1 3179 3652 -2494 6234 26 1 0 chr6 237306 238027 -189041527 - L1PA4 LINE L1 -180 5975 5254 1508 51 6 0 chr6 238027 238205 -189041349 + L1PA4 LINE L1 5977 6155 0 5289 160 34 33 chr6 238224 239308 -189040246 + L1MA7 LINE L1 3663 4747 -1399 32534 103 16 58 chr6 240482 246902 -189032652 + L1PA7 LINE L1 12 6153 -1 5530 153 51 12 chr6 247650 249155 -189030399 + L1MA7 LINE L1 4736 6287 -4 1262 238 111 31 chr6 249430 250097 -189029457 + L1M4 LINE L1 3559 4514 -1632 394 311 68 15 chr6 253038 253170 -189026384 - MIR3 SINE MIR -40 168 30 347 347 7 20 chr6 255147 255297 -189024257 + MIR SINE MIR 1 148 -114 250 184 0 0 chr6 255305 255354 -189024200 + L1MA4 LINE L1 6055 6103 -197 1303 150 4 4 chr6 255370 255617 -189023937 + L1MA4 LINE L1 6049 6295 -5 275 234 36 117 chr6 255666 255803 -189023751 + MIR SINE MIR 136 261 -1 500 191 0 0 chr6 256649 256733 -189022821 + AluS SINE Alu 1 84 -228 180 132 0 113 chr6 257934 257987 -189021567 + L2 LINE L2 3267 3313 0 34 42 0 0 chr6 260178 260226 -189019328 + AT_rich Low_complexity Low_complexity 1 48 0 730 131 0 83 chr6 260895 261040 -189018514 + FLAM_C SINE Alu 1 133 0 227 275 87 47 chr6 261111 261260 -189018294 + HAL1b LINE L1 742 896 -452 453 307 170 37 chr6 261575 262269 -189017285 - L2 LINE L2 0 3313 2485 564 296 169 22 chr6 262283 262550 -189017004 + L2 LINE L2 900 1205 -2109 1139 280 51 42 chr6 262765 263006 -189016548 + MLT1H1 LTR MaLR 1 238 -317 1829 168 42 25 chr6 263006 263364 -189016190 - THE1B LTR MaLR 0 364 1 11090 105 18 8 chr6 263364 264928 -189014626 - THE1B-int LTR MaLR 0 1580 1 1973 147 39 33 chr6 264928 265288 -189014266 - THE1B LTR MaLR 0 364 3 1139 280 51 42 chr6 265288 265569 -189013985 + MLT1H1 LTR MaLR 237 530 -25 247 250 10 62 chr6 265569 265665 -189013889 + MLT1H1-int LTR MaLR 7 97 -1274 749 167 74 6 chr6 265968 266130 -189013424 - LTR64 LTR ERVK 0 558 386 2386 94 52 0 chr6 266132 266494 -189013060 + L1PA14 LINE L1 5781 6161 0 2255 106 0 3 chr6 266631 266933 -189012621 + AluSq SINE Alu 1 301 -12 192 222 111 0 chr6 267448 267502 -189012052 + L2 LINE L2 3254 3313 0 577 325 94 48 chr6 267593 268131 -189011423 + L2 LINE L2 2716 3271 -1 789 342 33 25 chr6 269252 269647 -189009907 + MLT1E LTR MaLR 22 419 -174 527 303 92 43 chr6 269748 270213 -189009341 + L1MEd LINE L1 347 834 -5285 283 233 194 0 chr6 270887 270990 -189008564 - L2 LINE L2 -871 2443 2321 228 255 57 38 chr6 271380 271486 -189008068 + MER65B LTR ERV1 262 369 -162 315 324 40 7 chr6 271606 271754 -189007800 - L1M4 LINE L1 -2470 3676 3524 1207 289 70 13 chr6 271918 272577 -189006977 + L2 LINE L2 2616 3309 -4 490 223 16 31 chr6 272577 272770 -189006784 + L1 LINE L1 3794 3983 -2163 430 278 155 63 chr6 272770 273153 -189006401 + L1 LINE L1 4508 4925 -1221 1710 224 37 26 chr6 273156 273646 -189005908 + MLT1D LTR MaLR 1 495 -10 226 172 92 69 chr6 273647 273734 -189005820 + L1 LINE L1 4924 5012 -1134 846 284 76 29 chr6 273928 274586 -189004968 + L1ME3A LINE L1 5259 5947 -223 203 286 12 12 chr6 274940 275024 -189004530 + (TA)n Simple_repeat Simple_repeat 1 84 0 2166 123 29 45 chr6 275112 275493 -189004061 - THE1C LTR MaLR 0 375 1 419 56 112 0 chr6 276516 276659 -189002895 + (TA)n Simple_repeat Simple_repeat 2 160 0 2495 57 0 0 chr6 276793 277089 -189002465 - AluY SINE Alu -15 296 1 39 68 0 0 chr6 277161 277235 -189002319 + AT_rich Low_complexity Low_complexity 1 74 0 245 164 0 18 chr6 278598 278653 -189000901 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 518 146 0 0 chr6 278692 278788 -189000766 + L1MA5 LINE L1 6200 6295 -5 191 146 24 0 chr6 278931 278972 -189000582 + (TA)n Simple_repeat Simple_repeat 1 42 0 523 257 0 9 chr6 279247 279360 -189000194 + L2 LINE L2 3197 3308 -5 506 382 40 23 chr6 279371 279922 -188999632 + L2 LINE L2 2710 3270 -2 1953 167 13 0 chr6 280085 280385 -188999169 + AluJb SINE Alu 1 304 -8 679 202 21 5 chr6 281558 281746 -188997808 + L1MA4A LINE L1 6112 6302 -1 1291 205 39 35 chr6 281748 282506 -188997048 + L1M4c LINE L1 1451 2302 -4082 21 36 0 0 chr6 282640 282668 -188996886 + AT_rich Low_complexity Low_complexity 1 28 0 369 242 158 33 chr6 283055 283175 -188996379 - L2 LINE L2 -1 3312 3178 1992 130 0 0 chr6 283289 283559 -188995995 - AluSx SINE Alu -42 270 1 285 261 39 78 chr6 284000 284105 -188995449 - L2 LINE L2 -5 3308 3209 2343 107 0 0 chr6 284105 284413 -188995141 - AluSq SINE Alu -5 308 1 285 261 39 78 chr6 284413 284460 -188995094 - L2 LINE L2 -104 3209 3162 1837 113 3 65 chr6 284900 285193 -188994361 - AluSx SINE Alu -1 311 37 716 119 0 18 chr6 285195 285304 -188994250 - FLAM_C SINE Alu -8 135 29 688 158 0 0 chr6 285308 285409 -188994145 + FLAM_C SINE Alu 3 103 -40 874 206 25 0 chr6 285410 285516 -188994038 + L1MB4 LINE L1 1123 1225 -5104 2247 100 3 23 chr6 285516 285825 -188993729 + AluSg SINE Alu 1 303 -7 874 206 25 0 chr6 285825 286261 -188993293 + L1MB4 LINE L1 1225 2091 -4238 444 150 13 8 chr6 286276 286511 -188993043 + AluSq SINE Alu 1 313 0 2141 192 56 50 chr6 289303 289400 -188990154 - L1MC3 LINE L1 -662 7123 7028 4927 28 0 0 chr6 289400 289972 -188989582 - L1PA3 LINE L1 0 6155 5584 2141 192 56 50 chr6 289972 290495 -188989059 - L1MC3 LINE L1 -757 7028 6499 1905 162 0 13 chr6 290641 290944 -188988610 - AluSx SINE Alu -13 299 1 1442 244 98 22 chr6 290968 291643 -188987911 - L1ME2 LINE L1 -218 5946 5214 21 0 0 0 chr6 292555 292576 -188986978 + AT_rich Low_complexity Low_complexity 1 21 0 8483 209 47 29 chr6 292752 293324 -188986230 + L1MB4 LINE L1 2606 3166 -3196 2187 102 0 0 chr6 293324 293634 -188985920 - AluSx SINE Alu 0 310 1 8483 209 47 29 chr6 293634 293798 -188985756 + L1MB4 LINE L1 3166 3326 -3036 2251 115 0 0 chr6 293798 294093 -188985461 + AluSc SINE Alu 1 295 -14 8483 209 47 29 chr6 294093 295725 -188983829 + L1MB4 LINE L1 3326 4927 -1435 2288 89 0 4 chr6 295725 296066 -188983488 - AluY SINE Alu 0 342 3 8483 209 47 29 chr6 296066 296246 -188983308 + L1MB4 LINE L1 4927 5102 -1260 1548 167 61 10 chr6 296246 296540 -188983014 + L1MC1 LINE L1 6016 6324 -9 8483 209 47 29 chr6 296540 297667 -188981887 + L1MB4 LINE L1 5102 6361 -1 1444 104 54 14 chr6 297978 298199 -188981355 + MER30 DNA MER1_type 1 230 0 336 231 90 0 chr6 298301 298379 -188981175 + L2 LINE L2 3225 3309 -4 819 125 0 0 chr6 298726 298854 -188980700 + L1PA16 LINE L1 5698 5825 -341 1384 179 0 21 chr6 298858 299092 -188980462 + AluJo SINE Alu 1 229 -83 1827 128 56 36 chr6 299118 299455 -188980099 + L1PA16 LINE L1 5814 6157 -9 24 32 0 0 chr6 300940 300971 -188978583 + AT_rich Low_complexity Low_complexity 1 31 0 2193 110 3 3 chr6 301034 301335 -188978219 + AluSx SINE Alu 1 301 -11 181 333 0 25 chr6 301630 301711 -188977843 + MIR3 SINE MIR 123 201 -7 494 267 23 80 chr6 302906 302933 -188976621 - MIR3 SINE MIR -27 181 154 1522 177 83 3 chr6 302933 303221 -188976333 + AluJo SINE Alu 1 311 -1 494 267 23 80 chr6 303221 303369 -188976185 - MIR3 SINE MIR -54 154 16 2296 101 0 0 chr6 304029 304325 -188975229 + AluSx SINE Alu 1 296 -16 6363 196 39 54 chr6 306118 306258 -188973296 + L1MB7 LINE L1 3443 3584 -2600 2286 85 3 0 chr6 306258 306553 -188973001 - AluSp SINE Alu -15 298 3 6363 196 39 54 chr6 306553 307773 -188971781 + L1MB7 LINE L1 3584 4820 -1364 4120 102 17 107 chr6 307773 308221 -188971333 + L1MA3 LINE L1 5603 5953 -352 2222 97 0 3 chr6 308221 308519 -188971035 + AluSx SINE Alu 5 301 -11 4120 102 17 107 chr6 308519 308843 -188970711 + L1MA3 LINE L1 5953 6305 0 6363 196 39 54 chr6 308843 309570 -188969984 + L1MB7 LINE L1 4820 5484 -700 2059 90 32 0 chr6 309570 309849 -188969705 + AluSg SINE Alu 1 288 -22 6363 196 39 54 chr6 309849 310540 -188969014 + L1MB7 LINE L1 5484 6184 0 1607 111 0 0 chr6 310806 311031 -188968523 - AluSg/x SINE Alu 0 312 88 337 195 39 0 chr6 311861 311938 -188967616 + MER116 DNA Mariner 1 80 0 975 204 91 18 chr6 312227 312501 -188967053 - LTR37A LTR ERV1 -35 391 98 443 224 24 0 chr6 312549 312634 -188966920 - Tigger2 DNA MER2_type 0 2718 2632 10661 134 8 5 chr6 312654 315410 -188964144 - L1MA3 LINE L1 0 6305 3540 2332 104 28 11 chr6 315410 315766 -188963788 - Tigger2 DNA MER2_type -77 2641 2280 468 159 0 0 chr6 315764 315833 -188963721 - Tigger2 DNA MER2_type -2649 69 1 * 183 297 203 0 chr6 316370 316444 -188963110 - MIR SINE MIR -56 206 118 467 226 63 95 chr6 316509 316591 -188962963 - ORSL DNA AcHobo -4 271 188 2319 75 3 3 chr6 316591 316897 -188962657 + AluSp SINE Alu 1 306 -7 467 226 63 95 chr6 316897 317066 -188962488 - ORSL DNA AcHobo -87 188 28 508 273 130 19 chr6 317608 317762 -188961792 + MIR3 SINE MIR 31 201 -7 1740 122 44 7 chr6 318717 318987 -188960567 - AluSx SINE Alu -3 309 30 926 141 224 0 chr6 319000 319192 -188960362 + L1MA4A LINE L1 6063 6297 -6 2296 72 3 0 chr6 319971 320264 -188959290 + AluSq SINE Alu 1 294 -19 506 291 62 39 chr6 320265 320622 -188958932 - L1ME4a LINE L1 -234 5887 5523 350 281 0 0 chr6 321657 321753 -188957801 + GA-rich Low_complexity Low_complexity 1 96 0 308 62 0 21 chr6 321755 321803 -188957751 + (GGGAGA)n Simple_repeat Simple_repeat 1 47 0 665 169 0 25 chr6 321911 322071 -188957483 + CT-rich Low_complexity Low_complexity 2 157 0 2145 131 0 0 chr6 322280 322592 -188956962 + AluSx SINE Alu 1 312 0 189 259 52 0 chr6 323190 323248 -188956306 + MIR SINE MIR 80 140 -122 2067 103 0 7 chr6 323319 323601 -188955953 - AluSg SINE Alu -30 280 1 2130 115 3 0 chr6 323635 323940 -188955614 + AluSg SINE Alu 1 306 -4 200 128 0 26 chr6 323976 324015 -188955539 + (TTA)n Simple_repeat Simple_repeat 1 38 0 200 302 40 79 chr6 324267 324393 -188955161 + MIR3 SINE MIR 15 135 -73 1357 205 160 18 chr6 324393 324793 -188954761 - MLT1C LTR MaLR -7 460 4 209 297 62 0 chr6 324793 324857 -188954697 + MIR SINE MIR 121 188 -74 3824 90 13 26 chr6 325090 325624 -188953930 + MER1A DNA MER1_type 1 527 0 286 337 131 29 chr6 325687 325862 -188953692 + MIR3 SINE MIR 9 201 -7 2367 56 0 7 chr6 326420 326726 -188952828 + AluY SINE Alu 1 304 -7 462 322 132 60 chr6 327180 327583 -188951971 + L1MC4a LINE L1 5262 5733 -2075 432 97 0 0 chr6 327583 327645 -188951909 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 462 322 132 60 chr6 327645 327906 -188951648 + L1MC4a LINE L1 5733 5974 -1834 324 274 0 42 chr6 327831 327926 -188951628 - L1MC4 LINE L1 -1338 6704 6614 * 25 0 0 0 chr6 328950 328975 -188950579 + AT_rich Low_complexity Low_complexity 1 25 0 1994 103 46 0 chr6 329000 329282 -188950272 + AluSq SINE Alu 2 296 -17 201 304 14 0 chr6 329426 329495 -188950059 + CT-rich Low_complexity Low_complexity 4 73 0 270 257 257 0 chr6 329873 330021 -188949533 + MLT1L LTR MaLR 413 598 -17 1219 280 77 70 chr6 330372 331012 -188948542 + MER21B LTR ERV1 24 667 -196 196 288 72 39 chr6 331942 332066 -188947488 - MIR3 SINE MIR -54 154 51 367 281 92 12 chr6 332690 332854 -188946700 - MLT1L LTR MaLR -295 320 144 428 290 32 9 chr6 332854 333000 -188946554 - MER5B DNA MER1_type -4 174 32 2441 202 50 47 chr6 333511 334111 -188945443 + MER7C DNA MER2_type 1 602 0 2129 153 19 48 chr6 335382 335794 -188943760 + MER57A LTR ERV1 1 400 -3 673 243 93 4 chr6 337144 337391 -188942163 + L1MC4 LINE L1 7768 8036 -6 327 252 59 34 chr6 337399 337518 -188942036 + L1M4 LINE L1 4407 4528 -1618 542 218 58 13 chr6 337987 338143 -188941411 + MIR3 SINE MIR 36 198 -10 191 281 61 0 chr6 339330 339412 -188940142 - MIR SINE MIR -153 109 23 297 268 110 47 chr6 339657 339784 -188939770 - L2 LINE L2 -16 3256 3122 345 317 80 30 chr6 339874 340073 -188939481 - MIR SINE MIR -20 242 34 236 164 36 0 chr6 340910 340965 -188938589 + (TA)n Simple_repeat Simple_repeat 1 57 0 228 222 0 0 chr6 341072 341117 -188938437 - MER5A DNA MER1_type 0 189 145 2218 97 3 0 chr6 341223 341523 -188938031 + AluSq SINE Alu 1 301 -12 492 296 106 22 chr6 341713 341939 -188937615 + MIR SINE MIR 17 261 -1 482 316 11 27 chr6 342533 342720 -188936834 - MIR SINE MIR -1 261 78 4094 174 88 3 chr6 343344 344104 -188935450 - LTR1B LTR ERV1 0 826 2 2150 88 7 17 chr6 344643 344939 -188934615 + AluSq SINE Alu 1 293 -20 2747 200 48 2 chr6 344939 345540 -188934014 - L1MB3 LINE L1 -9 6174 5546 283 205 26 51 chr6 345808 345886 -188933668 + L1MC4 LINE L1 7785 7860 -182 214 208 42 0 chr6 348358 348406 -188931148 - MIR SINE MIR -96 166 117 244 258 32 0 chr6 349059 349121 -188930433 + MIR SINE MIR 82 145 -117 2067 116 0 0 chr6 349537 349845 -188929709 - AluSx SINE Alu 0 308 1 1906 138 3 20 chr6 349882 350186 -188929368 + AluSx SINE Alu 1 299 -13 281 179 0 75 chr6 350338 350405 -188929149 - MIR3 SINE MIR -53 155 94 260 223 27 115 chr6 350398 350525 -188929029 + L2 LINE L2 3138 3252 -20 * 1101 190 68 0 chr6 350525 350746 -188928808 - MER46A DNA MER2_type 0 236 1 260 223 27 115 chr6 350746 350766 -188928788 + L2 LINE L2 3252 3272 0 343 232 84 84 chr6 351058 351213 -188928341 + L1MCa LINE L1 1930 2084 -4342 837 198 77 0 chr6 352671 352853 -188926701 - MER20 DNA MER1_type -21 198 3 699 150 9 0 chr6 353168 353292 -188926262 + MER46A DNA MER2_type 107 333 0 220 216 27 95 chr6 353621 353695 -188925859 - L2 LINE L2 -3 3269 3201 204 272 67 77 chr6 354002 354197 -188925357 - L2 LINE L2 -870 2444 2252 357 202 46 55 chr6 354529 354638 -188924916 - MER5A DNA MER1_type 0 189 82 1301 209 116 15 chr6 354717 355113 -188924441 - L1MD2 LINE L1 -228 6131 5693 319 251 46 0 chr6 355183 355315 -188924239 - L1MB3 LINE L1 -691 5479 5337 2126 172 21 23 chr6 355320 355709 -188923845 + LTR45B LTR ERV1 4 391 -98 2203 113 3 10 chr6 356347 356649 -188922905 + AluSc SINE Alu 1 300 -9 1739 153 67 0 chr6 356767 357049 -188922505 + AluSx SINE Alu 1 301 -11 2304 86 7 10 chr6 358240 358531 -188921023 - AluSx SINE Alu -22 290 1 2294 105 16 0 chr6 358777 359081 -188920473 - AluSc SINE Alu 0 309 1 2239 121 0 0 chr6 359661 359959 -188919595 - AluSq SINE Alu -3 310 13 2155 136 0 0 chr6 360540 360834 -188918720 + AluSx SINE Alu 1 294 -18 928 148 0 13 chr6 360909 361267 -188918287 + (TCCA)n Simple_repeat Simple_repeat 1 530 0 317 217 0 130 chr6 361280 361418 -188918136 - L2 LINE L2 0 3313 3194 227 215 129 21 chr6 362110 362203 -188917351 + L1ME LINE L1 5830 5932 -189 1271 246 20 6 chr6 362244 362594 -188916960 - L1MB3 LINE L1 -1095 5051 4697 2406 98 0 0 chr6 362950 363247 -188916307 - AluSx SINE Alu -15 297 1 674 274 91 4 chr6 364078 364308 -188915246 - MIR SINE MIR -11 251 2 598 88 7 51 chr6 364363 364500 -188915054 + (CA)n Simple_repeat Simple_repeat 2 132 0 2153 108 7 3 chr6 364750 365047 -188914507 - AluSc SINE Alu -11 298 1 651 191 121 0 chr6 365424 365581 -188913973 + MER45A DNA AcHobo 3 178 0 1268 208 46 74 chr6 367133 367527 -188912027 + MLT1B LTR MaLR 1 383 -7 219 357 51 0 chr6 369058 369156 -188910398 + L2 LINE L2 3132 3234 -38 2380 60 0 23 chr6 369180 369480 -188910074 + AluY SINE Alu 1 293 -18 239 339 73 0 chr6 371127 371251 -188908303 + MIR SINE MIR 14 146 -116 748 207 22 137 chr6 371789 372059 -188907495 + MER8 DNA MER2_type 1 239 0 246 236 0 0 chr6 372108 372163 -188907391 - LTR40a LTR ERVL -24 495 441 598 252 119 54 chr6 372173 372451 -188907103 - LTR40c LTR ERVL -143 322 27 244 253 181 0 chr6 374785 374868 -188904686 - L3 LINE CR1 -124 1453 1356 2444 72 3 3 chr6 375456 375760 -188903794 - AluSp SINE Alu -9 304 1 4499 156 91 123 chr6 377091 378466 -188901088 - pTR5 LTR ERV1 -32 1683 831 5260 84 98 7 chr6 378466 379223 -188900331 + LTR12 LTR ERV1 1 826 0 4499 156 91 123 chr6 379223 380025 -188899529 - pTR5 LTR ERV1 -884 831 5 2127 130 3 3 chr6 380054 380361 -188899193 + AluSx SINE Alu 1 307 -5 2394 96 0 0 chr6 380428 380729 -188898825 - AluSg SINE Alu -9 301 1 2091 127 0 3 chr6 381300 381591 -188897963 - AluSq SINE Alu -23 290 1 300 302 86 43 chr6 381608 381747 -188897807 + HAL1b LINE L1 320 464 -884 226 153 71 24 chr6 381885 381970 -188897584 + (TTAA)n Simple_repeat Simple_repeat 4 92 0 432 83 28 0 chr6 382342 382414 -188897140 - AluSp/q SINE Alu -2 311 238 2127 101 4 4 chr6 382414 382690 -188896864 - AluSp SINE Alu -37 276 1 2170 197 75 8 chr6 383167 383645 -188895909 - L1M1 LINE L1 -536 5764 5255 1505 181 44 0 chr6 383648 383963 -188895591 - L1M1 LINE L1 -1010 5136 4808 2101 139 45 31 chr6 384065 384424 -188895130 - THE1B LTR MaLR 0 364 1 11158 110 16 3 chr6 384424 385984 -188893570 - THE1B-int LTR MaLR 0 1580 1 2054 157 6 28 chr6 385984 386347 -188893207 - THE1A LTR MaLR 0 355 1 944 190 6 11 chr6 386373 386552 -188893002 - AluJo SINE Alu -17 295 118 803 164 0 21 chr6 386584 386724 -188892830 - AluJo SINE Alu -175 137 1 21 0 0 0 chr6 387594 387615 -188891939 + AT_rich Low_complexity Low_complexity 1 21 0 224 54 54 0 chr6 389159 389196 -188890358 + T-rich Low_complexity Low_complexity 3 41 0 375 208 66 9 chr6 389199 389305 -188890249 - L1MA9 LINE L1 -37 6275 6164 2245 118 0 7 chr6 389316 389622 -188889932 - AluSg SINE Alu -6 304 1 2127 98 0 69 chr6 390505 390823 -188888731 - AluSg SINE Alu -14 296 1 2409 84 0 3 chr6 391040 391349 -188888205 - AluY SINE Alu -3 308 1 1005 174 12 0 chr6 391860 392027 -188887527 + FAM SINE Alu 2 170 -5 725 220 84 5 chr6 392343 392534 -188887020 - MER46C DNA MER2_type -132 206 1 364 253 43 56 chr6 392558 392720 -188886834 - MIR SINE MIR -36 226 67 5808 94 44 14 chr6 393446 393497 -188886057 - L1PB1 LINE L1 -1 6150 6102 2088 86 75 0 chr6 393497 393777 -188885777 - AluY SINE Alu -10 301 1 5808 94 44 14 chr6 393777 394620 -188884934 - L1PB1 LINE L1 -49 6102 5231 2128 171 100 23 chr6 394746 395181 -188884373 - L1MB2 LINE L1 -2 6169 5692 2223 95 14 3 chr6 395181 395476 -188884078 + AluY SINE Alu 1 298 -13 2128 171 100 23 chr6 395476 395520 -188884034 - L1MB2 LINE L1 -479 5692 5653 765 155 88 52 chr6 395522 395716 -188883838 + L1 LINE L1 4111 4311 -1835 * 16401 76 11 5 chr6 395706 397506 -188882048 - L1PA7 LINE L1 -95 6059 4242 2496 78 0 0 chr6 397506 397814 -188881740 - AluY SINE Alu -3 308 1 16401 76 11 5 chr6 397814 398931 -188880623 - L1PA7 LINE L1 -1912 4242 3133 204 184 0 0 chr6 401265 401314 -188878240 + GA-rich Low_complexity Low_complexity 2 50 0 216 0 0 0 chr6 402196 402220 -188877334 + (A)n Simple_repeat Simple_repeat 1 24 0 257 255 18 0 chr6 402937 403029 -188876525 - MIR SINE MIR -60 148 54 824 276 18 5 chr6 403727 403948 -188875606 - MER58A DNA MER1_type 0 224 1 193 57 57 0 chr6 404076 404111 -188875443 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 208 129 32 48 chr6 404297 404359 -188875195 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 626 143 10 0 chr6 406271 406369 -188873185 - MER72 LTR ERV1 -623 99 1 573 266 16 11 chr6 406582 406770 -188872784 - L1MC/D LINE L1 -2020 5765 5577 2940 155 46 16 chr6 406775 407335 -188872219 - MER34C LTR ERV1 -2 583 7 1168 227 85 26 chr6 407346 407958 -188871596 - L1MC/D LINE L1 -745 5401 4898 523 217 9 0 chr6 407974 408080 -188871474 + LTR60 LTR ERV1 1 107 -479 1077 187 64 132 chr6 408116 408586 -188870968 + LTR60 LTR ERV1 106 543 -43 * 4128 176 36 60 chr6 408431 409812 -188869742 + TAR1 Satellite telomeric 1 1348 -237 1183 49 3 38 chr6 409812 410163 -188869391 + (TTAGGG)n Simple_repeat Simple_repeat 1 338 0 951 214 0 5 chr6 410181 410368 -188869186 - AluJb SINE Alu -10 302 117 388 226 39 49 chr6 410368 410470 -188869084 - MER8 DNA MER2_type -136 103 3 1671 181 0 7 chr6 410581 410879 -188868675 + AluJo SINE Alu 1 296 -16 2217 109 0 0 chr6 412266 412569 -188866985 + AluSg SINE Alu 1 303 -7 2244 65 14 0 chr6 413474 413749 -188865805 - AluSx SINE Alu -11 301 23 594 194 118 12 chr6 414406 414576 -188864978 + L1MD3 LINE L1 7798 7985 -10 703 88 51 8 chr6 416762 417003 -188862551 + (TA)n Simple_repeat Simple_repeat 1 251 0 481 126 0 99 chr6 417503 417614 -188861940 + L1MA3 LINE L1 6204 6303 -2 256 339 39 23 chr6 418776 418906 -188860648 - L2 LINE L2 0 3272 3141 200 267 22 56 chr6 419435 419525 -188860029 + MIR SINE MIR 65 151 -111 267 254 48 120 chr6 419657 419866 -188859688 + L2 LINE L2 3073 3266 -6 207 206 0 0 chr6 419875 419909 -188859645 + L2 LINE L2 3168 3201 -71 1533 265 167 39 chr6 420106 420981 -188858573 + L1ME2 LINE L1 100 1086 -4984 1080 247 44 16 chr6 420975 421291 -188858263 + L1ME2 LINE L1 5285 5609 -489 * 2551 40 3 3 chr6 421381 421681 -188857873 + AluY SINE Alu 1 300 -11 1236 175 4 43 chr6 421687 421921 -188857633 + AluJb SINE Alu 71 295 -17 1342 236 89 14 chr6 421921 422357 -188857197 + L1ME2 LINE L1 5630 6098 0 3432 168 46 27 chr6 423871 424604 -188854950 - L1MB8 LINE L1 0 6112 5366 1409 223 113 9 chr6 424604 425154 -188854400 - L1MB8 LINE L1 -940 5140 4508 849 58 53 0 chr6 426422 426593 -188852961 + (TA)n Simple_repeat Simple_repeat 1 180 0 909 51 28 22 chr6 426610 426788 -188852766 + (TA)n Simple_repeat Simple_repeat 2 180 0 267 150 0 0 chr6 426812 426872 -188852682 + (TA)n Simple_repeat Simple_repeat 2 61 0 410 323 56 0 chr6 427346 427507 -188852047 - MIR SINE MIR -75 187 18 387 0 0 0 chr6 428424 428467 -188851087 + (TG)n Simple_repeat Simple_repeat 2 44 0 285 205 90 13 chr6 431094 431172 -188848382 + L1ME LINE L1 13 96 -5974 1399 216 65 30 chr6 431838 432297 -188847257 - L1MB8 LINE L1 -2946 3134 2660 2755 249 73 46 chr6 432303 434080 -188845474 - L1MB8 LINE L1 -3528 2552 729 * 13058 29 9 2 chr6 434074 435652 -188843902 - L1P LINE L1 -1990 4156 2567 500 183 99 47 chr6 435648 435839 -188843715 - L1ME LINE L1 -5108 962 762 * 21 57 0 0 chr6 436475 436510 -188843044 + AT_rich Low_complexity Low_complexity 1 35 0 353 281 113 45 chr6 437349 437570 -188841984 + MIR SINE MIR 13 248 -14 2387 84 0 3 chr6 439988 440284 -188839270 - AluSc SINE Alu -14 295 1 1809 142 110 23 chr6 443674 443984 -188835570 + MER1B DNA MER1_type 1 337 0 2004 146 0 0 chr6 445357 445637 -188833917 - AluSx SINE Alu -32 280 1 2252 109 0 3 chr6 446820 447123 -188832431 + AluSq SINE Alu 1 302 -11 786 107 13 3 chr6 447300 447421 -188832133 + MSTA LTR MaLR 319 428 0 3300 141 33 2 chr6 447421 447940 -188831614 + MSTA-int LTR MaLR 1 535 -1116 371 190 40 30 chr6 448035 448135 -188831419 - MER34B-int LTR ERV1 -4937 1394 1294 390 216 36 82 chr6 448474 448668 -188830886 - MER34B-int LTR ERV1 -6078 253 69 474 258 106 43 chr6 448730 449052 -188830502 - MER34B LTR ERV1 -3 562 221 392 270 81 0 chr6 449092 449203 -188830351 - MER34B LTR ERV1 -441 124 5 198 50 75 0 chr6 450415 450455 -188829099 + GA-rich Low_complexity Low_complexity 5 47 0 251 351 114 8 chr6 450604 450735 -188828819 + L2 LINE L2 3100 3244 -28 300 261 203 51 chr6 450792 451087 -188828467 + L1ME4a LINE L1 5744 6083 -38 198 65 32 65 chr6 452059 452121 -188827433 + (TCTCC)n Simple_repeat Simple_repeat 1 60 0 * 823 75 43 12 chr6 452118 452279 -188827275 + (TCTCTG)n Simple_repeat Simple_repeat 3 168 0 402 38 53 61 chr6 452253 452384 -188827170 + (TCTCC)n Simple_repeat Simple_repeat 2 131 0 * 3048 216 66 7 chr6 452541 452818 -188826736 - MER44D DNA MER2_type -1890 597 338 1645 178 17 0 chr6 452818 453116 -188826438 - AluJb SINE Alu -8 304 2 3048 216 66 7 chr6 453116 453523 -188826031 - MER44D DNA MER2_type -2149 338 1 2252 118 7 0 chr6 455010 455314 -188824240 - AluSx SINE Alu -6 306 1 415 235 73 7 chr6 456740 456876 -188822678 + MIR SINE MIR 9 153 -109 591 200 14 48 chr6 457865 458010 -188821544 - MER4C LTR ERV1 -63 402 263 1239 180 74 77 chr6 458100 458450 -188821104 - MER4A LTR ERV1 -315 349 1 509 258 144 25 chr6 458452 458778 -188820776 - L1M4 LINE L1 -2931 3215 2851 823 153 24 0 chr6 458778 458902 -188820652 + FLAM_C SINE Alu 1 127 -16 294 249 99 128 chr6 458902 459280 -188820274 - L1M4 LINE L1 -3282 2864 2511 2171 110 7 0 chr6 459280 459571 -188819983 - AluSq SINE Alu -20 293 1 294 249 99 128 chr6 459571 459831 -188819723 - L1M4 LINE L1 -3635 2511 2245 321 222 58 24 chr6 460108 460526 -188819028 - L1MD2 LINE L1 0 7808 6165 2216 110 0 0 chr6 461117 461408 -188818146 + AluSg SINE Alu 1 291 -19 618 222 12 8 chr6 511419 511669 -188767885 + CT-rich Low_complexity Low_complexity 1 251 0 5060 172 5 5 chr6 511767 513297 -188766257 + L1P5 LINE L1 4262 5791 -360 290 140 35 0 chr6 513297 513354 -188766200 + (CATA)n Simple_repeat Simple_repeat 3 61 0 233 267 0 11 chr6 513354 513444 -188766110 + L1MC4 LINE L1 6614 6702 -1340 2800 103 0 20 chr6 513464 513854 -188765700 + L1PB1 LINE L1 5769 6150 -1 23 0 0 0 chr6 513854 513877 -188765677 + AT_rich Low_complexity Low_complexity 1 23 0 198 245 51 82 chr6 514041 514139 -188765415 + MIR SINE MIR 105 199 -63 391 275 17 0 chr6 514247 514367 -188765187 + L2 LINE L2 3192 3313 0 563 125 10 0 chr6 514391 514495 -188765059 + (TC)n Simple_repeat Simple_repeat 1 105 0 10028 115 7 8 chr6 514872 516770 -188762784 - L1PA10 LINE L1 -2 6166 4263 2009 154 3 3 chr6 516770 517081 -188762473 + AluSx SINE Alu 1 311 -1 10028 115 7 8 chr6 517081 517389 -188762165 - L1PA10 LINE L1 -1905 4263 3956 316 341 98 43 chr6 517892 518197 -188761357 - L3 LINE CR1 -547 1030 709 210 306 241 20 chr6 518206 518405 -188761149 - L3 LINE CR1 -979 598 356 12843 125 26 19 chr6 518697 519005 -188760549 - Tigger1 DNA MER2_type -370 2048 1743 2140 136 0 13 chr6 519005 519321 -188760233 - AluJo SINE Alu 0 312 1 12843 125 26 19 chr6 519321 521041 -188758513 - Tigger1 DNA MER2_type -675 1743 7 2381 91 0 0 chr6 521767 522063 -188757491 - AluSg SINE Alu -14 296 1 2052 133 3 0 chr6 522137 522467 -188757087 - AluSx SINE Alu 0 312 1 623 227 97 5 chr6 523170 523355 -188756199 + L1ME2 LINE L1 5963 6164 0 427 258 81 66 chr6 528089 528287 -188751267 - MER63A DNA MER1_type -9 201 1 229 338 90 7 chr6 528298 528443 -188751111 + L2 LINE L2 2089 2245 -1069 337 339 58 37 chr6 528568 528757 -188750797 - MIR SINE MIR -21 241 49 885 219 59 0 chr6 529799 530018 -188749536 - Tigger6 DNA MER2_type -2 1595 1364 4973 40 2 0 chr6 530018 530639 -188748915 - L1P LINE L1 -2696 3450 2829 3541 47 0 0 chr6 530639 531042 -188748512 + L1PA5 LINE L1 5748 6152 -2 371 254 123 0 chr6 531237 531367 -188748187 + MER63A DNA MER1_type 56 201 -9 21 71 0 0 chr6 533529 533571 -188745983 + AT_rich Low_complexity Low_complexity 1 42 0 624 222 90 21 chr6 535623 535812 -188743742 - L1ME2 LINE L1 0 6164 5963 264 267 89 30 chr6 536993 537128 -188742426 + MIR3 SINE MIR 39 181 -27 206 192 0 39 chr6 537797 537849 -188741705 + GA-rich Low_complexity Low_complexity 2 51 0 189 107 0 0 chr6 538190 538218 -188741336 + (CACCC)n Simple_repeat Simple_repeat 5 32 0 1276 199 101 136 chr6 540257 541288 -188738266 + L1MC5 LINE L1 6857 7851 -110 1891 153 10 3 chr6 544494 544794 -188734760 - AluJb SINE Alu -10 302 1 664 183 0 0 chr6 546655 546759 -188732795 - FRAM SINE Alu -17 159 56 505 94 10 83 chr6 547252 547381 -188732173 + L1PA8 LINE L1 6082 6172 0 744 315 27 10 chr6 547431 547723 -188731831 - L1MEc LINE L1 -2386 3829 3533 300 253 62 41 chr6 547726 547872 -188731682 - L1MEc LINE L1 -4519 1877 1729 418 259 53 35 chr6 547941 548111 -188731443 - L1MEc LINE L1 -5895 310 138 264 314 95 7 chr6 548430 548567 -188730987 - L3 LINE CR1 -1102 475 327 24 53 0 0 chr6 548589 548627 -188730927 + AT_rich Low_complexity Low_complexity 1 38 0 358 279 66 27 chr6 548896 549079 -188730475 - L1ME2 LINE L1 -314 5807 5618 343 293 44 79 chr6 549140 549369 -188730185 - L1ME2 LINE L1 -607 5557 5337 2478 78 3 0 chr6 549399 549706 -188729848 - AluSp SINE Alu -5 308 1 771 249 42 46 chr6 549770 549987 -188729567 + MIR SINE MIR 42 257 -5 26 50 0 0 chr6 550782 550822 -188728732 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr6 550946 550967 -188728587 + AT_rich Low_complexity Low_complexity 1 21 0 1696 194 0 10 chr6 553725 554024 -188725530 - MER2 DNA MER2_type -8 337 42 231 218 36 91 chr6 554078 554188 -188725366 - L2 LINE L2 -569 2745 2642 187 338 0 27 chr6 554253 554327 -188725227 - L2 LINE L2 -556 2758 2687 22 0 0 0 chr6 554864 554886 -188724668 + AT_rich Low_complexity Low_complexity 1 22 0 2027 143 20 64 chr6 555793 556185 -188723369 - THE1C LTR MaLR 0 375 1 297 323 60 39 chr6 557078 557310 -188722244 + HAL1 LINE L1 1120 1356 -1151 297 68 0 0 chr6 557389 557433 -188722121 + (GA)n Simple_repeat Simple_repeat 1 44 0 436 329 48 18 chr6 557439 557667 -188721887 + HAL1b LINE L1 358 592 -756 461 223 103 29 chr6 557912 558154 -188721400 + L1ME2 LINE L1 2942 3201 -2945 900 210 6 33 chr6 558158 558339 -188721215 + AluJo SINE Alu 113 288 -24 476 242 150 16 chr6 558357 560100 -188719454 + L1ME2 LINE L1 3209 5507 -659 1373 236 110 6 chr6 560544 561035 -188718519 + L1ME2 LINE L1 5623 6164 0 396 205 13 0 chr6 561621 561698 -188717856 + Tigger5 DNA MER2_type 1 78 -2245 293 200 12 71 chr6 561698 561758 -188717796 - Tigger5 DNA MER2_type -3 2320 2265 2245 103 3 0 chr6 561758 562058 -188717496 + AluSg1 SINE Alu 1 301 -8 293 200 12 71 chr6 562058 562082 -188717472 - Tigger5 DNA MER2_type -58 2265 2241 * 369 176 0 0 chr6 562078 562146 -188717408 + Tigger5 DNA MER2_type 2256 2323 0 1096 121 0 0 chr6 563072 563221 -188716333 - AluSq/x SINE Alu -164 149 1 673 262 43 24 chr6 563513 563886 -188715668 + L1MEd LINE L1 970 1249 -4882 449 283 135 74 chr6 563920 564918 -188714636 + L1MEd LINE L1 2579 3637 -2492 265 261 34 42 chr6 564918 565037 -188714517 + L1ME2 LINE L1 5834 5951 -227 1455 172 74 16 chr6 566188 566666 -188712888 + L1MA7 LINE L1 5749 6295 -5 2925 3 0 0 chr6 567832 568145 -188711409 + AluYb8 SINE Alu 1 313 -5 411 251 102 21 chr6 568681 568916 -188710638 + L1ME4a LINE L1 5631 5884 -237 316 235 29 73 chr6 569027 569163 -188710391 + L1ME4a LINE L1 5992 6121 0 2227 159 30 28 chr6 569462 569895 -188709659 + Tigger2a DNA MER2_type 1 434 0 211 263 165 45 chr6 569928 570061 -188709493 + MIR3 SINE MIR 4 152 -56 1204 228 71 50 chr6 574929 575393 -188704161 + LTR42 LTR ERVL 2 475 -20 476 306 135 5 chr6 575444 575666 -188703888 + L2 LINE L2 2178 2428 -886 1913 146 3 0 chr6 575895 576183 -188703371 - AluSx SINE Alu -23 289 1 206 312 9 18 chr6 576234 576343 -188703211 + (TA)n Simple_repeat Simple_repeat 2 109 0 243 103 0 0 chr6 576344 576383 -188703171 + (TG)n Simple_repeat Simple_repeat 2 40 0 2241 92 0 7 chr6 577012 577306 -188702248 - AluSg SINE Alu -18 292 1 273 299 133 88 chr6 580109 580304 -188699250 - L2 LINE L2 -24 3289 3104 2499 74 0 3 chr6 580304 580613 -188698941 + AluSc SINE Alu 1 308 -1 273 299 133 88 chr6 580613 580839 -188698715 - L2 LINE L2 -209 3104 2849 2223 101 3 16 chr6 581496 581804 -188697750 + AluSx SINE Alu 1 304 -8 384 229 47 84 chr6 583338 583552 -188696002 - Charlie5 DNA MER1_type 0 2624 2419 2386 92 0 3 chr6 583668 583974 -188695580 - AluSq SINE Alu -8 305 1 28 86 0 0 chr6 583975 584045 -188695509 + AT_rich Low_complexity Low_complexity 1 70 0 243 221 26 39 chr6 584322 584399 -188695155 - MER8 DNA MER2_type -162 77 2 2277 83 14 0 chr6 584558 584848 -188694706 - AluSc SINE Alu -15 294 1 318 243 111 62 chr6 586538 586781 -188692773 - L1ME4a LINE L1 -35 6086 5832 200 273 0 0 chr6 587369 587424 -188692130 + GA-rich Low_complexity Low_complexity 3 57 0 30 59 0 0 chr6 587897 587948 -188691606 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr6 588533 588555 -188690999 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 588992 589013 -188690541 + AT_rich Low_complexity Low_complexity 1 21 0 226 315 240 0 chr6 589193 589339 -188690215 - L2 LINE L2 -531 2783 2603 635 302 215 6 chr6 589620 590113 -188689441 + L2 LINE L2 2111 2706 -608 250 324 0 0 chr6 590255 590366 -188689188 + L2 LINE L2 2949 3059 -254 33 0 0 0 chr6 590425 590458 -188689096 + AT_rich Low_complexity Low_complexity 1 33 0 382 283 23 28 chr6 590520 590697 -188688857 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 814 262 74 68 chr6 591060 591571 -188687983 + MLT2B1 LTR ERVL 1 514 -6 2519 62 0 0 chr6 593094 593399 -188686155 - AluY SINE Alu -6 305 1 185 318 0 61 chr6 593504 593570 -188685984 - L2 LINE L2 -18 3295 3234 350 230 355 7 chr6 593580 593732 -188685822 - MIR SINE MIR 0 262 58 394 243 189 0 chr6 595228 595339 -188684215 - MIR SINE MIR -67 195 64 58 60 0 0 chr6 596606 596706 -188682848 + AT_rich Low_complexity Low_complexity 1 100 0 628 313 86 48 chr6 596747 597306 -188682248 - L1MC4a LINE L1 -1694 6114 5535 218 263 105 94 chr6 597631 597802 -188681752 - L2 LINE L2 -5 3308 3136 1726 92 78 163 chr6 597993 598150 -188681404 + MSTB LTR MaLR 7 176 -250 1581 109 17 0 chr6 598150 598389 -188681165 + MER75B DNA T2_type 1 243 0 1726 92 78 163 chr6 598389 598690 -188680864 + MSTB LTR MaLR 176 426 0 27 29 0 0 chr6 599537 599571 -188679983 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr6 599972 599993 -188679561 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr6 601116 601160 -188678394 + AT_rich Low_complexity Low_complexity 1 44 0 521 264 39 19 chr6 601243 601398 -188678156 - L2 LINE L2 0 3313 3156 21 95 0 0 chr6 601960 602023 -188677531 + AT_rich Low_complexity Low_complexity 1 63 0 2209 130 0 0 chr6 603006 603306 -188676248 - AluSg SINE Alu -10 300 1 211 280 40 13 chr6 603686 603761 -188675793 + MIR3 SINE MIR 132 208 0 2148 113 3 10 chr6 603978 604279 -188675275 + AluSx SINE Alu 1 299 -13 180 0 0 0 chr6 605590 605610 -188673944 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 255 125 0 0 chr6 605694 605734 -188673820 + (TA)n Simple_repeat Simple_repeat 1 40 0 23 33 0 0 chr6 607039 607069 -188672485 + AT_rich Low_complexity Low_complexity 1 30 0 2429 71 0 0 chr6 610215 610510 -188669044 - AluY SINE Alu -16 295 1 699 209 68 80 chr6 610769 611095 -188668459 + L1MC5 LINE L1 7612 7933 -28 2080 107 7 24 chr6 611320 611618 -188667936 - AluSg SINE Alu -17 293 1 262 293 71 10 chr6 612361 612460 -188667094 + L2 LINE L2 2955 3059 -213 302 229 60 131 chr6 612653 612797 -188666757 - MER5B DNA MER1_type -3 175 45 2432 50 0 30 chr6 612797 613098 -188666456 + AluY SINE Alu 7 298 -13 302 229 60 131 chr6 613098 613136 -188666418 - MER5B DNA MER1_type -133 45 6 21 0 0 0 chr6 613260 613281 -188666273 + AT_rich Low_complexity Low_complexity 1 21 0 406 316 153 54 chr6 613649 614732 -188664822 + L2 LINE L2 2028 3250 -22 180 261 22 0 chr6 615079 615125 -188664429 + L2 LINE L2 3201 3247 -25 2062 128 0 28 chr6 615710 616031 -188663523 + AluSx SINE Alu 1 312 0 229 311 37 30 chr6 618748 618883 -188660671 + MIR3 SINE MIR 67 202 -6 1715 181 11 0 chr6 619343 619630 -188659924 - AluJo SINE Alu -19 293 4 471 298 54 0 chr6 619900 620068 -188659486 - MIR SINE MIR -10 252 76 2283 84 0 24 chr6 620148 620446 -188659108 - AluSg SINE Alu -19 291 1 623 227 97 5 chr6 621149 621334 -188658220 + L1ME2 LINE L1 5963 6164 0 469 255 75 70 chr6 626428 626628 -188652926 - MER63A DNA MER1_type -9 201 1 278 342 57 25 chr6 626639 626797 -188652757 + L2 LINE L2 2089 2251 -1063 337 339 58 37 chr6 626920 627109 -188652445 - MIR SINE MIR -21 241 49 885 219 59 0 chr6 628151 628370 -188651184 - Tigger6a DNA MER2_type -2 1081 850 4973 40 2 0 chr6 628370 628991 -188650563 - L1P LINE L1 -2696 3450 2829 3541 47 0 0 chr6 628991 629394 -188650160 + L1PA5 LINE L1 5748 6152 -2 2839 240 97 9 chr6 629427 630219 -188649335 - Tigger6a DNA MER2_type -221 862 1 626 320 61 4 chr6 630221 630449 -188649105 + MIR SINE MIR 17 257 -5 749 148 6 42 chr6 630496 630668 -188648886 - MER3 DNA MER1_type 0 209 1 1284 144 42 14 chr6 633442 633657 -188645897 + MER46A DNA MER2_type 1 221 -15 598 225 191 0 chr6 635135 635308 -188644246 - MER58C DNA MER1_type -9 206 1 201 74 0 0 chr6 636406 636433 -188643121 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1221 15 0 0 chr6 636718 636889 -188642665 + L1PA4 LINE L1 6013 6183 0 1890 236 68 23 chr6 637053 637566 -188641988 + MER77 LTR ERV1 60 595 -10 21 57 0 0 chr6 637689 637724 -188641830 + AT_rich Low_complexity Low_complexity 1 35 0 336 111 0 0 chr6 638133 638187 -188641367 + (TG)n Simple_repeat Simple_repeat 2 55 0 405 207 18 36 chr6 638402 638513 -188641041 + L1MC5 LINE L1 7370 7478 -483 1329 112 0 0 chr6 638534 638712 -188640842 + AluSg/x SINE Alu 131 308 -4 379 287 43 28 chr6 638725 638958 -188640596 + L1MC5 LINE L1 7501 7824 -218 2690 23 0 0 chr6 639289 639590 -188639964 + AluY SINE Alu 2 302 -9 1235 105 17 6 chr6 639696 639900 -188639654 - AluSc SINE Alu 0 311 106 24 0 0 0 chr6 639943 639967 -188639587 + AT_rich Low_complexity Low_complexity 1 24 0 275 314 34 25 chr6 644995 645113 -188634441 + MER117 DNA MER1_type 36 154 -43 384 258 273 10 chr6 647239 647437 -188632117 + MIR SINE MIR 13 262 0 185 213 187 27 chr6 647487 647562 -188631992 - MIR SINE MIR -71 191 105 204 40 0 0 chr6 648482 648507 -188631047 + (T)n Simple_repeat Simple_repeat 1 25 0 2315 88 0 3 chr6 649565 649859 -188629695 - AluSx SINE Alu -19 293 1 21 0 0 0 chr6 649954 649975 -188629579 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr6 650210 650234 -188629320 + (A)n Simple_repeat Simple_repeat 1 24 0 772 215 41 0 chr6 650614 650786 -188628768 + LTR37A LTR ERV1 248 426 0 570 287 123 0 chr6 651031 651226 -188628328 - MIR SINE MIR -10 252 34 2358 90 0 19 chr6 654224 654536 -188625018 + AluSg SINE Alu 1 306 -4 180 219 0 0 chr6 654766 654807 -188624747 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr6 654842 654864 -188624690 + AT_rich Low_complexity Low_complexity 1 22 0 300 307 181 0 chr6 655120 655325 -188624229 - MIR SINE MIR -4 258 17 1914 129 0 60 chr6 657033 657350 -188622204 - AluJb SINE Alu -13 299 2 31 68 0 0 chr6 657707 657766 -188621788 + AT_rich Low_complexity Low_complexity 1 59 0 2242 103 0 6 chr6 658747 659058 -188620496 + AluSc SINE Alu 1 309 0 340 354 31 10 chr6 661391 661607 -188617947 + MIR SINE MIR 3 249 -13 2313 90 7 0 chr6 661618 661918 -188617636 + AluSg SINE Alu 2 303 -7 356 260 103 113 chr6 662496 662722 -188616832 + HAL1 LINE L1 620 844 -1663 3800 136 71 5 chr6 662722 663325 -188616229 - LTR48B LTR ERV1 -1 643 1 356 260 103 113 chr6 663325 663398 -188616156 + HAL1 LINE L1 844 916 -1591 1862 153 24 66 chr6 663461 663841 -188615713 + MLT1B LTR MaLR 25 388 -2 262 284 116 53 chr6 664004 664229 -188615325 + HAL1 LINE L1 2124 2362 -145 555 245 77 77 chr6 664247 664533 -188615021 + MER21B LTR ERV1 5 290 -573 708 196 106 32 chr6 665296 665485 -188614069 + MER21B LTR ERV1 660 862 -1 619 253 32 58 chr6 665495 665807 -188613747 + L1ME LINE L1 812 1115 -5090 278 274 49 20 chr6 665876 665978 -188613576 + L1ME LINE L1 1644 1748 -4648 5909 222 167 31 chr6 665993 668613 -188610941 + L1M4 LINE L1 2392 5368 -778 1156 201 225 0 chr6 668607 668940 -188610614 + L1MC4 LINE L1 6595 7002 -1040 * 674 217 91 11 chr6 668948 669123 -188610431 - L1MC4 LINE L1 -462 7580 7392 765 227 74 29 chr6 669124 669366 -188610188 + L1MC4 LINE L1 7735 7987 -55 323 244 2 0 chr6 669378 669470 -188610084 + L1MC4 LINE L1 7681 8042 0 252 345 101 14 chr6 670361 670500 -188609054 - MIR3 SINE MIR -11 197 47 310 244 49 0 chr6 671075 671157 -188608397 + L2 LINE L2 3223 3308 -5 1799 138 57 27 chr6 671683 671979 -188607575 - AluJo SINE Alu -7 305 1 947 201 0 0 chr6 671986 672155 -188607399 - FAM SINE Alu -6 169 1 22 0 0 0 chr6 673061 673083 -188606471 + AT_rich Low_complexity Low_complexity 1 22 0 244 283 109 36 chr6 673180 673318 -188606236 + MIR3 SINE MIR 38 185 -23 2393 75 0 16 chr6 673994 674299 -188605255 - AluY SINE Alu -11 300 1 2035 140 3 0 chr6 674338 674668 -188604886 + AluSx SINE Alu 1 312 0 2381 91 0 0 chr6 674742 675038 -188604516 + AluSg SINE Alu 1 296 -14 14926 132 27 17 chr6 675764 677484 -188602070 + Tigger1 DNA MER2_type 7 1759 -659 2140 136 0 13 chr6 677484 677800 -188601754 + AluJo SINE Alu 1 312 0 14926 132 27 17 chr6 677800 678466 -188601088 + Tigger1 DNA MER2_type 1759 2417 -1 581 245 153 38 chr6 680341 680688 -188598866 - L1ME4a LINE L1 -202 5919 5533 449 290 60 33 chr6 681377 681560 -188597994 + L2 LINE L2 3126 3313 0 260 27 27 0 chr6 681599 681636 -188597918 + (TA)n Simple_repeat Simple_repeat 2 39 0 2375 98 0 0 chr6 681636 681931 -188597623 - AluSq SINE Alu -18 295 1 236 331 21 14 chr6 682107 682255 -188597299 - L1P LINE L1 -1914 4232 4077 321 182 171 0 chr6 682281 682369 -188597185 - MER106B DNA MER1_type 0 1059 957 12413 199 79 30 chr6 682372 685856 -188593698 + L1PB1 LINE L1 51 3363 -3504 881 118 0 0 chr6 685856 685975 -188593579 + AluSg/x SINE Alu 179 297 -15 12413 199 79 30 chr6 685975 687161 -188592393 + L1PB1 LINE L1 3363 4490 -2377 189 0 0 0 chr6 687161 687182 -188592372 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 12413 199 79 30 chr6 687182 688907 -188590647 + L1PB1 LINE L1 4490 6865 -2 759 298 58 0 chr6 688914 689122 -188590432 + MER58A DNA MER1_type 2 221 -3 1609 140 43 37 chr6 689502 689802 -188589752 - L1MC2 LINE L1 -18 6326 6025 2145 164 118 27 chr6 689802 690326 -188589228 - L1MCa LINE L1 -4142 2284 1713 2936 164 32 26 chr6 690335 690832 -188588722 + MLT2B3 LTR ERVL 16 518 -36 447 19 0 0 chr6 690832 690884 -188588670 + (TCCA)n Simple_repeat Simple_repeat 4 55 0 2936 164 32 26 chr6 690884 690922 -188588632 + MLT2B3 LTR ERVL 518 554 0 1149 205 115 0 chr6 690924 691202 -188588352 - L1MCa LINE L1 -4815 1611 1302 906 201 50 30 chr6 691638 691937 -188587617 + MER2 DNA MER2_type 6 345 0 24 0 0 0 chr6 693444 693468 -188586086 + AT_rich Low_complexity Low_complexity 1 24 0 1751 159 152 42 chr6 693526 693897 -188585657 - Charlie1 DNA MER1_type -1730 1031 702 909 165 0 0 chr6 693897 694030 -188585524 + FLAM_A SINE Alu 1 133 0 1847 134 78 0 chr6 694038 694341 -188585213 + AluSx SINE Alu 1 312 0 1751 159 152 42 chr6 694341 694369 -188585185 - Charlie1 DNA MER1_type -2065 696 578 3146 190 77 31 chr6 694466 694867 -188584687 - L1MCa LINE L1 -4510 1916 1535 194 0 39 0 chr6 694867 694893 -188584661 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3146 190 77 31 chr6 694893 695491 -188584063 - L1MCa LINE L1 -4891 1535 776 891 211 11 6 chr6 695489 695669 -188583885 - L1MCa LINE L1 -6167 259 79 * 641 196 21 21 chr6 695665 695808 -188583746 - L1MCa LINE L1 -6272 154 12 * 2064 112 36 7 chr6 695941 696245 -188583309 + AluSq SINE Alu 1 313 0 1089 135 17 97 chr6 696725 696962 -188582592 - Tigger1 DNA MER2_type -2200 218 1 288 0 0 0 chr6 697676 697708 -188581846 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 1410 171 209 31 chr6 697720 698164 -188581390 + MER74A LTR ERVL 34 556 -2 22 35 0 0 chr6 700362 700391 -188579163 + AT_rich Low_complexity Low_complexity 1 29 0 1723 98 0 0 chr6 700515 700730 -188578824 - AluSg SINE Alu -95 215 1 282 281 305 0 chr6 700734 700898 -188578656 - MIR SINE MIR -36 226 13 279 0 0 0 chr6 700898 700929 -188578625 + (CA)n Simple_repeat Simple_repeat 1 31 0 276 255 128 10 chr6 701222 701324 -188578230 + MIR SINE MIR 77 190 -72 26 50 0 0 chr6 701946 701986 -188577568 + AT_rich Low_complexity Low_complexity 1 40 0 358 330 89 65 chr6 702200 702727 -188576827 + L1ME LINE L1 5267 5806 -315 302 253 53 0 chr6 702893 702968 -188576586 - MIR SINE MIR -150 112 34 419 246 123 35 chr6 702994 703197 -188576357 - L1MC5 LINE L1 -30 7931 7711 22 56 0 0 chr6 704478 704514 -188575040 + AT_rich Low_complexity Low_complexity 1 36 0 2428 76 0 3 chr6 705159 705463 -188574091 - AluY SINE Alu -8 303 1 488 174 31 39 chr6 705627 705818 -188573736 + L1MB7 LINE L1 5889 6114 -66 211 338 0 0 chr6 707122 707193 -188572361 + G-rich Low_complexity Low_complexity 6 76 0 225 0 0 0 chr6 708091 708116 -188571438 + (CA)n Simple_repeat Simple_repeat 2 26 0 414 51 0 0 chr6 708833 708892 -188570662 - AluSc SINE Alu -6 303 245 2193 80 35 7 chr6 708939 709225 -188570329 - AluSg SINE Alu -16 294 1 1996 114 10 33 chr6 710132 710438 -188569116 - AluJo SINE Alu -4 308 10 249 269 103 13 chr6 710599 710677 -188568877 - L2 LINE L2 0 3313 3229 * 368 368 162 25 chr6 710675 711522 -188568032 - L2 LINE L2 -1393 1921 959 183 217 0 43 chr6 712034 712080 -188567474 - MIR SINE MIR -15 247 204 1391 226 7 3 chr6 713038 713321 -188566233 + AluJo SINE Alu 1 284 -28 1904 128 24 0 chr6 713392 713681 -188565873 + AluYa5 SINE Alu 1 296 -15 308 161 54 0 chr6 713936 713992 -188565562 - L2 LINE L2 0 3272 3214 415 174 14 0 chr6 714231 714300 -188565254 - MER8 DNA MER2_type 0 239 170 * 2206 144 108 2 chr6 714297 714694 -188564860 + Tigger2 DNA MER2_type 2280 2718 0 2867 161 205 20 chr6 717022 717631 -188561923 + pTR5 LTR ERV1 1717 2438 0 523 138 92 28 chr6 717642 717751 -188561803 + MER53 DNA DNA 72 187 -2 1067 288 151 12 chr6 717754 718438 -188561116 - L2 LINE L2 -1521 1793 1015 467 219 89 0 chr6 718514 718637 -188560917 - MER94 DNA DNA 0 134 1 2258 98 7 7 chr6 718668 718974 -188560580 + AluSc SINE Alu 1 306 -3 252 346 48 18 chr6 719729 719957 -188559597 + ERVL LTR ERVL 4410 4644 -1120 376 321 54 29 chr6 720200 720480 -188559074 + ERVL LTR ERVL 5094 5380 -384 464 244 289 29 chr6 720662 720977 -188558577 + LTR16C LTR ERVL 85 481 -10 1395 165 4 16 chr6 721041 721283 -188558271 - AluJo SINE Alu -20 292 54 308 205 212 40 chr6 722313 722464 -188557090 + L2 LINE L2 3126 3302 -11 284 339 46 9 chr6 724525 724634 -188554920 + MIR3 SINE MIR 87 199 -9 2421 97 0 0 chr6 724658 724969 -188554585 - AluY SINE Alu 0 311 1 22 0 0 0 chr6 727545 727567 -188551987 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr6 727937 727976 -188551578 + AT_rich Low_complexity Low_complexity 1 39 0 426 318 17 6 chr6 728796 728969 -188550585 + (CA)n Simple_repeat Simple_repeat 1 175 0 192 253 0 0 chr6 728971 729046 -188550508 + (CATA)n Simple_repeat Simple_repeat 4 78 0 219 259 0 0 chr6 729080 729165 -188550389 + (CA)n Simple_repeat Simple_repeat 1 85 0 22 35 0 0 chr6 732218 732247 -188547307 + AT_rich Low_complexity Low_complexity 1 29 0 5178 20 3 3 chr6 734162 734753 -188544801 - L1PA3 LINE L1 0 6155 5565 339 231 13 0 chr6 735201 735279 -188544275 - MIR3 SINE MIR -17 191 113 260 250 0 0 chr6 735668 735732 -188543822 + MLT1I LTR MaLR 346 409 0 343 246 69 23 chr6 736611 736741 -188542813 + L2 LINE L2 3137 3272 0 508 314 42 29 chr6 738777 739162 -188540392 - L2 LINE L2 0 3313 2924 318 328 154 17 chr6 739221 739636 -188539918 - L2 LINE L2 -369 2945 2474 550 254 109 16 chr6 739719 739912 -188539642 + MIR SINE MIR 52 262 0 526 299 57 10 chr6 739925 740119 -188539435 - L2 LINE L2 -874 2440 2238 251 290 107 0 chr6 740155 740286 -188539268 - L2 LINE L2 -1194 2120 1976 2429 88 0 3 chr6 740838 741144 -188538410 - AluSq SINE Alu -8 305 1 1241 185 161 24 chr6 741173 741514 -188538040 + MLT1B LTR MaLR 3 390 0 241 291 134 34 chr6 741999 742267 -188537287 - L2 LINE L2 -84 3229 2935 211 328 74 0 chr6 742337 742459 -188537095 - L2 LINE L2 -504 2810 2680 1322 166 200 10 chr6 742694 742805 -188536749 - MER7A DNA MER2_type -2692 346 257 1489 102 56 0 chr6 742805 743020 -188536534 - MER30 DNA MER1_type -2 228 2 1322 166 200 10 chr6 743020 743198 -188536356 - MER7A DNA MER2_type -2781 257 4 280 274 168 58 chr6 743217 743527 -188536027 - L2 LINE L2 -1318 1996 1653 664 213 27 19 chr6 745039 745218 -188534336 - MER5A DNA MER1_type 0 189 3 2616 68 0 0 chr6 745820 746129 -188533425 - AluY SINE Alu -2 309 1 366 284 31 89 chr6 746430 746722 -188532832 + LTR16C LTR ERVL 108 382 -109 3104 168 2 0 chr6 747046 747594 -188531960 - L1P LINE L1 -1610 4536 3988 5713 139 8 6 chr6 747597 748710 -188530844 + L1PA14 LINE L1 5047 6161 0 989 145 6 52 chr6 748710 748882 -188530672 + AluJb SINE Alu 132 295 -17 1501 172 41 28 chr6 748958 749249 -188530305 - AluJo SINE Alu -15 297 3 219 250 0 0 chr6 749319 749387 -188530167 + CT-rich Low_complexity Low_complexity 5 72 0 234 0 0 0 chr6 751797 751823 -188527731 + (GA)n Simple_repeat Simple_repeat 1 26 0 470 336 38 19 chr6 754444 754655 -188524899 - MIR SINE MIR -26 236 22 555 260 19 7 chr6 754748 754902 -188524652 + L2 LINE L2 3153 3308 -5 520 304 42 51 chr6 756445 756896 -188522658 - L2 LINE L2 0 3313 2867 345 273 50 22 chr6 757156 757295 -188522259 - MARNA DNA Mariner -33 553 411 2075 96 15 4 chr6 757295 757567 -188521987 - AluSq SINE Alu -12 301 27 925 138 0 0 chr6 757889 758019 -188521535 + AluSp SINE Alu 1 130 -183 2440 48 3 0 chr6 758119 758411 -188521143 - AluY SINE Alu -18 293 1 35 41 0 0 chr6 760058 760107 -188519447 + AT_rich Low_complexity Low_complexity 1 49 0 950 295 102 31 chr6 760354 760745 -188518809 - L1ME3 LINE L1 -277 5885 5437 2203 132 3 0 chr6 760745 761233 -188518321 - AluSq SINE Alu 0 313 1 950 295 102 31 chr6 761233 761427 -188518127 - L1ME3 LINE L1 -725 5437 5258 881 136 65 0 chr6 761448 761602 -188517952 - Tigger1 DNA MER2_type 0 2418 2255 260 174 31 10 chr6 761607 761705 -188517849 + (TA)n Simple_repeat Simple_repeat 1 100 0 12537 125 15 40 chr6 761711 761912 -188517642 - Tigger1 DNA MER2_type -196 2222 2017 1913 103 3 94 chr6 761912 762231 -188517323 - AluSq SINE Alu -23 290 1 12537 125 15 40 chr6 762231 764330 -188515224 - Tigger1 DNA MER2_type -401 2017 1 652 306 52 29 chr6 764443 764887 -188514667 - L1ME3 LINE L1 -1103 5043 4590 417 246 84 14 chr6 765084 765226 -188514328 - MIR SINE MIR 0 262 111 308 336 55 48 chr6 765226 765372 -188514182 + L1ME2 LINE L1 5731 5877 -287 1209 215 27 5 chr6 765459 765678 -188513876 + MER58A DNA MER1_type 1 224 0 934 153 23 6 chr6 765949 766125 -188513429 + L1MA4 LINE L1 6118 6296 -4 2235 228 82 14 chr6 766460 767047 -188512507 + L1ME3 LINE L1 5536 6162 0 1234 116 32 26 chr6 767184 767373 -188512181 + L1PA15 LINE L1 5969 6158 -7 194 150 25 0 chr6 768004 768044 -188511510 + (TA)n Simple_repeat Simple_repeat 1 41 0 201 121 0 0 chr6 768044 768077 -188511477 + (TC)n Simple_repeat Simple_repeat 2 34 0 229 318 120 54 chr6 768331 768573 -188510981 + L2 LINE L2 2659 2916 -398 22 0 0 0 chr6 769666 769688 -188509866 + AT_rich Low_complexity Low_complexity 1 22 0 761 225 34 49 chr6 771787 772054 -188507500 - LTR13 LTR ERVK -744 263 1 229 191 95 16 chr6 772112 772175 -188507379 + LTR13 LTR ERVK 242 309 -698 822 295 93 42 chr6 772186 772391 -188507163 - L1M4 LINE L1 -1503 4643 4450 2400 72 7 0 chr6 772391 772683 -188506871 - AluSp SINE Alu -19 294 1 822 295 93 42 chr6 772683 773220 -188506334 - L1M4 LINE L1 -1696 4450 3863 261 114 63 13 chr6 774101 774180 -188505374 + GA-rich Low_complexity Low_complexity 2 84 0 207 0 0 0 chr6 774501 774524 -188505030 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2107 128 0 0 chr6 774526 774808 -188504746 - AluSq SINE Alu -31 282 1 228 176 0 0 chr6 775454 775505 -188504049 + LTR33 LTR ERVL 1 51 -470 310 42 42 0 chr6 775728 775776 -188503778 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 299 232 14 0 chr6 775857 775926 -188503628 + LTR33 LTR ERVL 426 495 -26 711 285 38 29 chr6 777188 777528 -188502026 - L1M4 LINE L1 -2703 3443 3101 650 267 32 45 chr6 777575 777822 -188501732 + LTR33 LTR ERVL 278 521 0 196 229 0 100 chr6 778263 778333 -188501221 - L2 LINE L2 -93 3220 3158 1602 223 31 77 chr6 778421 778942 -188500612 + MLT1D LTR MaLR 9 505 0 238 299 43 104 chr6 778943 779174 -188500380 - L2 LINE L2 -403 2911 2695 307 287 85 53 chr6 780672 780860 -188498694 + L1ME4a LINE L1 5926 6119 -2 2379 55 3 39 chr6 780896 781206 -188498348 + AluY SINE Alu 1 299 -12 1640 177 88 9 chr6 781547 781864 -188497690 + MLT2C1 LTR ERVL 8 349 -48 1907 154 50 71 chr6 781919 782301 -188497253 - THE1C LTR MaLR -1 374 1 293 130 19 37 chr6 782380 782434 -188497120 + MLT2C1 LTR ERVL 468 520 0 762 193 66 0 chr6 782435 782601 -188496953 + MLT1D-int LTR MaLR 2 178 -1193 1735 57 0 13 chr6 782620 782850 -188496704 + AluY SINE Alu 1 227 -84 263 320 69 15 chr6 782851 783054 -188496500 + MLT1C LTR MaLR 247 460 -7 237 216 157 0 chr6 784487 784538 -188495016 - L2 LINE L2 -16 3297 3239 699 256 125 38 chr6 784602 784616 -188494938 - LTR16C LTR ERVL 0 491 480 1647 201 175 24 chr6 784616 785068 -188494486 + MLT2B1 LTR ERVL 1 520 0 699 256 125 38 chr6 785068 785373 -188494181 - LTR16C LTR ERVL -11 480 144 2199 100 0 34 chr6 785846 786166 -188493388 - AluSx SINE Alu -3 309 1 863 261 114 19 chr6 786166 786491 -188493063 + MLT1J LTR MaLR 25 380 -131 314 281 0 12 chr6 789765 789865 -188489689 + CT-rich Low_complexity Low_complexity 1 98 0 1723 229 31 52 chr6 841387 841947 -188437607 - L2 LINE L2 -3 3310 2777 2073 94 3 3 chr6 841947 842234 -188437320 - AluSg SINE Alu -23 287 1 1723 229 31 52 chr6 842234 842302 -188437252 - L2 LINE L2 -536 2777 2709 618 224 175 6 chr6 843213 843396 -188436158 + MIR SINE MIR 37 250 -12 1264 242 58 22 chr6 845944 846304 -188433250 - MLT1A2 LTR MaLR -1 373 1 1923 119 172 107 chr6 846485 846932 -188432622 - LTR26E LTR ERV1 -146 476 1 230 368 47 74 chr6 847285 847543 -188432011 - L2 LINE L2 0 3272 3022 284 150 27 16 chr6 847743 847816 -188431738 - L1MC2 LINE L1 0 6333 6256 4783 158 34 19 chr6 847819 848703 -188430851 + L1MC1 LINE L1 5319 6215 -118 4030 128 16 19 chr6 849432 850065 -188429489 + MER41B LTR ERV1 1 631 -4 1164 179 24 8 chr6 850728 850979 -188428575 + L1MB7 LINE L1 5911 6165 -19 507 174 24 0 chr6 851028 851155 -188428399 + L1M4 LINE L1 5202 5331 -832 365 286 45 9 chr6 851162 851274 -188428280 - L1MC4 LINE L1 -1341 6701 6586 358 291 0 0 chr6 851268 851347 -188428207 + L1MC4 LINE L1 6614 6692 -1350 * 674 45 0 0 chr6 851348 851436 -188428118 + L1MC/D LINE L1 5360 5447 -897 1654 161 42 98 chr6 851495 851905 -188427649 - MLT1B LTR MaLR -3 387 1 668 119 198 0 chr6 851905 852031 -188427523 + L1MC/D LINE L1 5617 5767 -577 1619 223 95 63 chr6 853609 854134 -188425420 - MLT1F LTR MaLR 0 542 1 302 0 26 0 chr6 856680 856718 -188422836 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3095 147 106 19 chr6 856947 857539 -188422015 + MER73 LTR ERVL 1 644 0 13984 75 3 8 chr6 857764 857954 -188421600 + L1PA7 LINE L1 3491 3680 -2474 231 36 0 0 chr6 857954 857982 -188421572 + (CA)n Simple_repeat Simple_repeat 1 28 0 13984 75 3 8 chr6 857982 858952 -188420602 + L1PA7 LINE L1 3680 4653 -1501 2781 6 0 9 chr6 858952 859268 -188420286 + AluYb8 SINE Alu 1 313 -5 13984 75 3 8 chr6 859268 860782 -188418772 + L1PA7 LINE L1 4653 6149 -5 1687 186 73 35 chr6 860897 861268 -188418286 + MLT1B LTR MaLR 6 390 0 444 224 154 21 chr6 861291 861434 -188418120 + MLT1H LTR MaLR 11 172 -377 298 286 214 0 chr6 861535 861661 -188417893 + MLT1H LTR MaLR 392 544 -5 192 389 18 9 chr6 864059 864172 -188415382 - MIR SINE MIR -74 134 21 2465 53 0 0 chr6 864459 864761 -188414793 - AluY SINE Alu -9 302 1 26 30 0 0 chr6 864988 865021 -188414533 + AT_rich Low_complexity Low_complexity 1 33 0 540 126 0 0 chr6 865355 865442 -188414112 + (TCCA)n Simple_repeat Simple_repeat 2 88 0 920 143 6 0 chr6 865453 865621 -188413933 + (TCCA)n Simple_repeat Simple_repeat 2 170 0 579 213 0 0 chr6 865632 865773 -188413781 + (TCCA)n Simple_repeat Simple_repeat 2 142 0 819 183 0 0 chr6 865784 865959 -188413595 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 413 264 0 85 chr6 865962 866091 -188413463 - L2 LINE L2 -5 3308 3191 208 260 0 0 chr6 866779 866829 -188412725 + L2 LINE L2 3258 3307 -6 2924 156 112 55 chr6 867600 867674 -188411880 - LTR8A LTR ERV1 0 727 659 1971 75 39 29 chr6 867674 867975 -188411579 + AluY SINE Alu 1 304 0 2924 156 112 55 chr6 867975 868587 -188410967 - LTR8A LTR ERV1 -68 659 1 249 33 0 0 chr6 869219 869249 -188410305 + (TG)n Simple_repeat Simple_repeat 2 31 0 24 32 0 0 chr6 872373 872404 -188407150 + AT_rich Low_complexity Low_complexity 1 31 0 552 194 0 0 chr6 872420 872518 -188407036 + FLAM_C SINE Alu 26 123 -20 2107 94 3 23 chr6 873181 873488 -188406066 + AluSg SINE Alu 1 301 -9 21 36 0 0 chr6 875098 875126 -188404428 + AT_rich Low_complexity Low_complexity 1 28 0 2182 88 3 10 chr6 875239 875535 -188404019 - AluSp SINE Alu -19 294 1 2500 34 0 0 chr6 875846 876140 -188403414 + AluY SINE Alu 1 294 -17 263 342 221 9 chr6 876232 876454 -188403100 - L3 LINE CR1 -5 1572 1304 241 263 288 0 chr6 877915 877995 -188401559 - L2 LINE L2 0 3313 3211 2082 201 21 31 chr6 878411 878893 -188400661 - L1MB7 LINE L1 -7 6177 5701 1918 159 31 3 chr6 878900 879227 -188400327 + Tigger4(Zombi) DNA MER2_type 1 336 -2395 1938 100 0 25 chr6 879229 879510 -188400044 + Tigger4(Zombi) DNA MER2_type 2457 2730 -1 2347 157 54 25 chr6 879511 879987 -188399567 - L1MB7 LINE L1 -489 5689 5196 2117 114 7 0 chr6 879987 880286 -188399268 - AluSx SINE Alu -9 303 3 2347 157 54 25 chr6 880286 880371 -188399183 - L1MB7 LINE L1 -982 5196 5115 2179 138 62 8 chr6 881224 881593 -188397961 + MLT1B LTR MaLR 1 389 -1 276 288 129 30 chr6 881755 881939 -188397615 - MIR SINE MIR -50 212 14 22 35 0 0 chr6 882175 882204 -188397350 + AT_rich Low_complexity Low_complexity 1 29 0 267 214 36 12 chr6 883446 883530 -188396024 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 231 309 12 24 chr6 886959 887043 -188392511 + MIR3 SINE MIR 115 197 -11 313 262 87 10 chr6 887047 887150 -188392404 + L1MC4 LINE L1 7928 8038 -4 3063 196 97 68 chr6 887254 888093 -188391461 + MER21B LTR ERV1 1 863 0 190 229 0 0 chr6 888433 888468 -188391086 - L2 LINE L2 -1433 1881 1847 197 244 37 6 chr6 888486 888554 -188391000 - MIR SINE MIR -56 152 81 249 33 0 0 chr6 889327 889357 -188390197 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr6 889955 889990 -188389564 + AT_rich Low_complexity Low_complexity 1 35 0 279 339 42 36 chr6 891382 891550 -188388004 - MIR SINE MIR -73 189 21 180 0 0 0 chr6 893692 893712 -188385842 + (CATA)n Simple_repeat Simple_repeat 4 23 0 874 189 83 152 chr6 893773 893977 -188385577 - MLT1A2 LTR MaLR -8 382 218 369 0 0 0 chr6 893977 894018 -188385536 + (TG)n Simple_repeat Simple_repeat 1 41 0 874 189 83 152 chr6 894018 894221 -188385333 - MLT1A2 LTR MaLR -172 218 3 1869 132 0 4 chr6 894326 894670 -188384884 - AluY SINE Alu 0 343 1 1779 172 67 6 chr6 895030 895390 -188384164 - L1MB3 LINE L1 -9 6174 5793 644 178 159 25 chr6 895418 895581 -188383973 + MER58A DNA MER1_type 40 224 0 23 54 0 0 chr6 896553 896590 -188382964 + AT_rich Low_complexity Low_complexity 1 37 0 1103 191 9 43 chr6 897267 897498 -188382056 + MER58A DNA MER1_type 2 224 0 1971 121 0 0 chr6 897768 898078 -188381476 - AluSx SINE Alu 0 310 1 272 313 0 12 chr6 898319 898399 -188381155 + MIR SINE MIR 23 101 -107 269 237 97 72 chr6 898737 898920 -188380634 - MLT1J2 LTR MaLR -215 231 44 552 258 129 15 chr6 899452 899716 -188379838 + LTR50 LTR ERVL 502 795 0 225 291 80 117 chr6 900425 900638 -188378916 + L2 LINE L2 3063 3267 -5 264 214 0 43 chr6 902419 902489 -188377065 + (CACCAT)n Simple_repeat Simple_repeat 5 71 0 2137 114 0 13 chr6 902674 902982 -188376572 - AluSg SINE Alu -2 308 5 1505 123 35 15 chr6 903053 903313 -188376241 + L1MA5A LINE L1 6030 6294 -3 324 211 0 0 chr6 905075 905132 -188374422 - FLAM_A SINE Alu -75 57 1 208 318 34 23 chr6 905861 905949 -188373605 + MIR SINE MIR 36 124 -84 195 297 122 0 chr6 905980 906054 -188373500 - L2 LINE L2 -32 3281 3199 623 89 0 10 chr6 906057 906158 -188373396 + (GA)n Simple_repeat Simple_repeat 1 100 0 547 250 128 0 chr6 906315 906503 -188373051 - MER5C DNA MER1_type 0 324 113 268 229 0 48 chr6 906515 906598 -188372956 + CT-rich Low_complexity Low_complexity 4 82 0 3107 254 155 44 chr6 906707 907500 -188372054 + L1MC4 LINE L1 6469 7172 -870 2207 117 43 81 chr6 907500 907887 -188371667 + MSTB LTR MaLR 1 401 -25 314 0 49 0 chr6 907887 907928 -188371626 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1755 122 4 11 chr6 907933 908211 -188371343 - AluSq SINE Alu -37 276 1 2144 121 0 3 chr6 908218 908532 -188371022 - AluSq SINE Alu 0 313 1 2207 117 43 81 chr6 908532 908573 -188370981 + MSTB LTR MaLR 411 426 0 3107 254 155 44 chr6 908573 909195 -188370359 + L1MC4 LINE L1 7172 8042 0 270 104 0 62 chr6 909197 909245 -188370309 - MER5C DNA MER1_type -201 123 79 1372 166 22 25 chr6 910453 910731 -188368823 - AluJo SINE Alu -25 287 11 677 199 46 7 chr6 911009 911160 -188368394 - MER45A DNA AcHobo 0 178 22 2005 87 11 7 chr6 911204 911480 -188368074 + AluSx SINE Alu 24 300 -12 940 286 74 25 chr6 912101 912534 -188367020 + L1ME3A LINE L1 5513 5966 -204 332 45 76 0 chr6 912662 912728 -188366826 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 309 343 63 58 chr6 912728 913110 -188366444 - L1MEd LINE L1 -4935 1184 801 612 95 71 0 chr6 913110 913278 -188366276 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 528 273 122 65 chr6 913532 913917 -188365637 - MLT1J LTR MaLR 0 511 105 331 244 96 77 chr6 914264 914751 -188364803 - L1MC5 LINE L1 -183 8058 1922 * 414 145 63 5 chr6 914334 914752 -188364802 + (TA)n Simple_repeat Simple_repeat 1 442 0 315 244 26 52 chr6 914746 914861 -188364693 - L1MC5 LINE L1 -4335 2091 1980 * 310 116 70 23 chr6 914776 914948 -188364606 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 306 206 89 89 chr6 914861 915041 -188364513 + L1MC5 LINE L1 7576 7755 -206 * 240 111 89 0 chr6 914921 915056 -188364498 + (TATAA)n Simple_repeat Simple_repeat 5 151 0 * 205 200 40 13 chr6 915043 915118 -188364436 + (TTATA)n Simple_repeat Simple_repeat 3 79 0 * 1248 244 58 22 chr6 917120 917480 -188362074 + MLT1A2 LTR MaLR 1 373 -1 520 229 175 6 chr6 919478 919661 -188359893 - MIR SINE MIR -12 250 37 231 36 0 0 chr6 920643 920671 -188358883 + (GA)n Simple_repeat Simple_repeat 2 29 0 234 231 0 0 chr6 921378 921430 -188358124 + C-rich Low_complexity Low_complexity 1 52 0 198 309 99 66 chr6 921852 922004 -188357550 - L2 LINE L2 -5 3267 3111 292 327 59 41 chr6 922129 922349 -188357205 - MIR SINE MIR -35 227 4 1991 92 0 11 chr6 922662 922923 -188356631 - AluSg SINE Alu -14 296 39 2090 114 0 46 chr6 923940 924247 -188355307 - AluSg SINE Alu -17 293 1 3356 108 124 2 chr6 924291 924809 -188354745 + LTR12 LTR ERV1 1 581 -133 232 353 0 20 chr6 925097 925199 -188354355 + MIR SINE MIR 84 183 -79 2193 138 80 31 chr6 925319 925732 -188353822 + Tigger2a DNA MER2_type 2 434 0 192 297 47 0 chr6 925805 925869 -188353685 - L2 LINE L2 -1 3312 3246 222 317 55 35 chr6 925994 926139 -188353415 - L2 LINE L2 -191 3081 2934 2216 191 33 9 chr6 926301 926751 -188352803 - LOR1b LTR ERV1 0 461 1 4393 108 68 85 chr6 928678 929477 -188350077 + LTR1 LTR ERV1 1 785 0 16050 154 61 27 chr6 929477 932397 -188347157 + HUERS-P2 LTR ERV1 1 3088 0 4084 121 74 74 chr6 932440 933225 -188346329 + LTR1 LTR ERV1 1 785 0 2155 228 34 15 chr6 934399 934935 -188344619 + L1MC3 LINE L1 7240 7785 0 567 310 31 31 chr6 934985 935211 -188344343 - MIR SINE MIR -1 261 36 301 290 140 11 chr6 935365 935551 -188344003 + L1ME3 LINE L1 416 625 -6096 528 297 76 42 chr6 936114 936564 -188342990 + L1ME3 LINE L1 1314 1747 -4793 2695 110 0 3 chr6 936564 936929 -188342625 - THE1B LTR MaLR 0 364 1 528 297 76 42 chr6 936929 937015 -188342539 + L1ME3 LINE L1 1747 1872 -4668 5106 45 0 0 chr6 937015 937619 -188341935 + L1PA5 LINE L1 5550 6153 -1 528 297 76 42 chr6 937619 937634 -188341920 + L1ME3 LINE L1 1872 1885 -4655 * 1834 265 101 39 chr6 937630 938134 -188341420 + L1ME3 LINE L1 4147 4619 -1937 2461 54 0 7 chr6 938134 938431 -188341123 + AluY SINE Alu 1 295 -16 1834 265 101 39 chr6 938431 938975 -188340579 + L1ME3 LINE L1 4619 6526 -30 375 289 86 13 chr6 939046 939347 -188340207 + L1ME LINE L1 3316 3638 -2902 22 0 0 0 chr6 939860 939882 -188339672 + AT_rich Low_complexity Low_complexity 1 22 0 6132 43 1 0 chr6 940072 940796 -188338758 - L1PA7 LINE L1 -11 6143 5419 1353 182 26 45 chr6 940796 941065 -188338489 - AluJb SINE Alu -35 277 14 327 274 65 38 chr6 941118 941304 -188338250 + L1ME LINE L1 5596 5786 -754 290 257 105 66 chr6 941500 941652 -188337902 + L1ME LINE L1 5940 6097 -467 234 0 0 0 chr6 941994 942020 -188337534 + (A)n Simple_repeat Simple_repeat 1 26 0 197 327 106 10 chr6 942542 942646 -188336908 - L2 LINE L2 -8 3264 3151 333 323 158 30 chr6 942877 943041 -188336513 - MER91A DNA MER1_type -11 185 1 1604 216 8 14 chr6 944480 944836 -188334718 - L1MC1 LINE L1 -1 6332 5979 239 170 19 19 chr6 944876 944929 -188334625 - L1MC1 LINE L1 -360 5984 5932 476 163 8 24 chr6 945599 945722 -188333832 + CT-rich Low_complexity Low_complexity 3 123 0 647 193 6 28 chr6 945800 945981 -188333573 + CT-rich Low_complexity Low_complexity 2 178 0 324 284 28 74 chr6 946471 946647 -188332907 - MIR3 SINE MIR -25 183 16 1510 180 82 0 chr6 946684 947051 -188332503 + MER74A LTR ERVL 132 528 -30 317 277 67 8 chr6 947634 947753 -188331801 + MIR SINE MIR 21 146 -116 347 246 99 28 chr6 949668 949810 -188329744 + MIR SINE MIR 34 185 -77 207 213 0 49 chr6 950171 950232 -188329322 + MIR SINE MIR 89 146 -62 716 189 23 34 chr6 950284 950339 -188329215 - MIR SINE MIR -37 225 171 2393 150 61 0 chr6 950339 950746 -188328808 - MSTB1 LTR MaLR 0 432 1 716 189 23 34 chr6 950746 950865 -188328689 - MIR SINE MIR -91 171 53 247 234 35 127 chr6 952117 952314 -188327240 - MER112 DNA MER1_type -48 212 34 2105 113 0 7 chr6 952314 952597 -188326957 + AluY SINE Alu 1 281 -30 186 233 0 0 chr6 954059 954119 -188325435 + (TA)n Simple_repeat Simple_repeat 1 60 0 58 54 0 0 chr6 954127 954220 -188325334 + AT_rich Low_complexity Low_complexity 1 93 0 486 219 47 72 chr6 954227 954505 -188325049 - L1MC5 LINE L1 -184 7777 7507 893 258 30 8 chr6 954523 954790 -188324764 - MER33 DNA MER1_type -30 294 22 488 314 71 25 chr6 955285 955610 -188323944 - L2 LINE L2 0 3313 2974 3051 296 116 16 chr6 955728 957474 -188322080 - L2 LINE L2 -1076 2238 319 1117 152 148 9 chr6 957524 957754 -188321800 - L1MB8 LINE L1 -60 6118 5857 21 36 0 0 chr6 958057 958085 -188321469 + AT_rich Low_complexity Low_complexity 1 28 0 254 324 47 7 chr6 958433 958581 -188320973 + L1ME LINE L1 5757 5910 -211 192 83 0 56 chr6 959708 959744 -188319810 - L2 LINE L2 0 3272 3239 349 266 87 35 chr6 960888 961117 -188318437 - L1ME4a LINE L1 -252 5869 5629 1465 257 74 4 chr6 963589 964060 -188315494 + MLT1D LTR MaLR 2 505 0 2276 101 0 0 chr6 964708 964996 -188314558 + AluSc SINE Alu 1 288 -21 212 357 0 0 chr6 965233 965303 -188314251 + MIR SINE MIR 45 114 -148 388 323 52 13 chr6 965494 965649 -188313905 - MIR SINE MIR -100 162 2 383 333 78 16 chr6 966511 966703 -188312851 - MIR SINE MIR -16 246 43 857 189 111 75 chr6 967800 968106 -188311448 + MER33 DNA MER1_type 7 323 -1 180 77 0 0 chr6 972121 972147 -188307407 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 279 245 128 21 chr6 973044 973232 -188306322 + L1ME4a LINE L1 5742 5949 -172 189 274 16 0 chr6 974612 974674 -188304880 + MIR3 SINE MIR 103 165 -43 1771 151 15 8 chr6 974832 975097 -188304457 - AluJb SINE Alu -18 294 28 388 306 141 15 chr6 975761 975960 -188303594 + HAL1 LINE L1 286 509 -1998 1785 159 32 155 chr6 976397 976951 -188302603 + MER66B LTR ERV1 1 486 0 248 289 39 0 chr6 976990 977094 -188302460 + HAL1 LINE L1 991 1098 -1409 1017 193 133 9 chr6 977095 977328 -188302226 + L1M4c LINE L1 3 264 -6120 2304 80 3 13 chr6 977695 977994 -188301560 - AluY SINE Alu -15 296 1 1108 263 117 52 chr6 978465 979055 -188300499 - HAL1 LINE L1 -644 1863 1236 2278 152 49 0 chr6 979774 980143 -188299411 - MLT1B LTR MaLR -3 387 1 549 211 75 25 chr6 980657 980818 -188298736 - MER5B DNA MER1_type -5 173 5 204 267 17 17 chr6 980913 980973 -188298581 + L2 LINE L2 3138 3197 -75 1645 161 46 14 chr6 981155 981435 -188298119 + AluJo SINE Alu 1 289 -23 29 28 0 0 chr6 981753 981789 -188297765 + AT_rich Low_complexity Low_complexity 1 36 0 2706 97 11 0 chr6 981956 982317 -188297237 - L1PB1 LINE L1 -5 6146 5782 239 77 0 26 chr6 982317 982356 -188297198 + (TA)n Simple_repeat Simple_repeat 1 38 0 298 228 65 11 chr6 982364 982456 -188297098 - L1MC4 LINE L1 -1343 6699 6603 228 268 0 31 chr6 982461 982558 -188296996 - L1MC4 LINE L1 -1340 6702 6609 5799 161 8 26 chr6 982597 984303 -188295251 - L1P5 LINE L1 -360 5791 4121 9331 152 48 8 chr6 984331 985219 -188294335 - L1PBa LINE L1 -2508 4354 3503 2485 91 0 0 chr6 985219 985527 -188294027 - AluY SINE Alu -1 310 3 9331 152 48 8 chr6 985527 987439 -188292115 - L1PBa LINE L1 -3359 3503 1441 2607 141 19 2 chr6 987436 987854 -188291700 - L1PBa LINE L1 -6436 427 3 * 2235 92 30 0 chr6 990478 990773 -188288781 - AluSq SINE Alu -9 304 1 525 287 106 11 chr6 990829 991017 -188288537 - MIR SINE MIR -27 235 30 276 308 115 20 chr6 991074 991266 -188288288 + L3b LINE CR1 1123 1346 -237 1661 129 47 8 chr6 991266 991521 -188288033 + AluSx SINE Alu 39 303 -9 276 308 115 20 chr6 991521 991581 -188287973 + L3b LINE CR1 1346 1399 -184 2458 55 0 19 chr6 991621 991928 -188287626 + AluY SINE Alu 1 301 -10 15722 98 3 2 chr6 993295 996189 -188283365 - L1PA8 LINE L1 0 6172 3275 1513 209 6 3 chr6 996632 996958 -188282596 - L1M4 LINE L1 -1034 5112 4786 532 184 9 9 chr6 996961 997075 -188282479 + L1MC/D LINE L1 2297 2410 -3974 311 200 12 12 chr6 997216 997301 -188282253 + L1MC/D LINE L1 2474 2558 -3824 2894 233 109 23 chr6 997331 997664 -188281890 + L1MC/D LINE L1 2696 2999 -3383 2945 149 2 7 chr6 997664 998094 -188281460 - MSTA LTR MaLR 0 428 1 2894 233 109 23 chr6 998094 998790 -188280764 + L1MC/D LINE L1 2999 3813 -2569 1188 96 0 0 chr6 998790 998936 -188280618 + AluY SINE Alu 1 146 -165 1354 188 49 62 chr6 998936 999260 -188280294 + THE1C LTR MaLR 56 375 0 4716 219 27 16 chr6 999260 1000474 -188279080 + L1MC/D LINE L1 4363 5589 -793 263 230 50 50 chr6 1000690 1000790 -188278764 + L1MC/D LINE L1 6024 6123 -1921 632 284 72 55 chr6 1001027 1002059 -188277495 + L1ME3A LINE L1 4906 5927 -243 462 155 54 0 chr6 1002152 1002320 -188277234 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 212 158 18 0 chr6 1002341 1002398 -188277156 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 556 163 29 6 chr6 1002428 1002600 -188276954 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 987 254 75 18 chr6 1003071 1003460 -188276094 - LTR16A LTR ERVL 0 450 40 1919 182 28 23 chr6 1004050 1004485 -188275069 + L1MB7 LINE L1 5748 6184 0 216 218 36 0 chr6 1004986 1005041 -188274513 + L2 LINE L2 3216 3272 0 186 244 0 0 chr6 1005321 1005362 -188274192 - L2 LINE L2 -5 3308 3268 * 544 239 158 16 chr6 1005328 1005512 -188274042 - MIR SINE MIR -6 256 47 1551 194 56 48 chr6 1006148 1006525 -188273029 - MLT1B LTR MaLR -8 382 3 3197 176 125 3 chr6 1006757 1007421 -188272133 - MER49 LTR ERV1 0 923 179 300 27 0 0 chr6 1008766 1008803 -188270751 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 426 234 71 26 chr6 1011157 1011344 -188268210 - L1MC4a LINE L1 0 7995 7623 491 217 11 11 chr6 1011359 1011539 -188268015 + CT-rich Low_complexity Low_complexity 1 180 0 1612 121 0 0 chr6 1012921 1013145 -188266409 - AluSg/x SINE Alu -4 308 85 339 78 0 0 chr6 1013328 1013379 -188266175 + (CA)n Simple_repeat Simple_repeat 1 51 0 1289 245 233 70 chr6 1013954 1014894 -188264660 + L1MC4 LINE L1 6716 7808 0 1405 121 9 23 chr6 1015089 1015304 -188264250 + AluJo SINE Alu 58 269 -43 456 305 34 51 chr6 1017020 1017197 -188262357 - MIR3 SINE MIR -2 206 33 198 0 0 0 chr6 1017362 1017384 -188262170 + (CA)n Simple_repeat Simple_repeat 2 23 0 4024 163 40 19 chr6 1017384 1018145 -188261409 - L1MB3 LINE L1 -27 6156 5377 350 185 12 0 chr6 1018775 1018856 -188260698 + CT-rich Low_complexity Low_complexity 4 85 0 1760 209 57 27 chr6 1020155 1020595 -188258959 - MLT1D LTR MaLR -2 503 51 270 0 0 0 chr6 1020610 1020640 -188258914 + (TG)n Simple_repeat Simple_repeat 1 30 0 1129 226 66 8 chr6 1022700 1022957 -188256597 + MLT1A1 LTR MaLR 70 341 -24 1383 119 0 0 chr6 1022957 1023159 -188256395 - L1PA8 LINE L1 -867 5279 5078 6764 72 7 9 chr6 1023159 1024052 -188255502 + L1PA8 LINE L1 5276 6172 0 264 224 0 0 chr6 1024087 1024136 -188255418 + MLT1A1 LTR MaLR 315 363 -2 21 0 0 0 chr6 1024565 1024586 -188254968 + AT_rich Low_complexity Low_complexity 1 21 0 296 257 82 70 chr6 1025321 1025492 -188254062 - MER5B DNA MER1_type -2 176 4 * 526 279 84 44 chr6 1025492 1025739 -188253815 + MIR SINE MIR 7 261 -1 188 302 16 101 chr6 1027006 1027135 -188252419 - MIR3 SINE MIR -6 202 85 351 329 90 26 chr6 1027195 1027350 -188252204 - L2 LINE L2 0 3272 3108 421 288 79 10 chr6 1027473 1027658 -188251896 + MIR SINE MIR 12 200 -62 270 269 15 0 chr6 1028172 1028239 -188251315 - MIR3 SINE MIR -54 154 87 460 299 201 11 chr6 1028242 1028610 -188250944 - LTR16B LTR ERVL -24 440 3 780 324 107 21 chr6 1029043 1029668 -188249886 - ERVL LTR ERVL -2327 3437 2727 547 121 61 50 chr6 1029716 1029815 -188249739 - LTR12 LTR ERV1 0 714 615 296 198 66 22 chr6 1029818 1029909 -188249645 - LTR30 LTR ERV1 -80 642 548 1067 119 37 107 chr6 1029910 1030154 -188249400 - LTR12 LTR ERV1 -435 279 53 243 250 0 0 chr6 1030154 1030206 -188249348 - LTR30 LTR ERV1 -670 52 1 1612 306 88 36 chr6 1030270 1031126 -188248428 - ERVL LTR ERVL -2406 2590 1691 549 371 44 18 chr6 1031796 1032294 -188247260 - ERVL LTR ERVL -4483 513 3 238 231 213 37 chr6 1032298 1032514 -188247040 - LTR16B LTR ERVL -2 462 209 375 318 16 0 chr6 1033900 1034029 -188245525 + MER63A DNA MER1_type 63 193 -17 957 149 0 0 chr6 1035940 1036115 -188243439 + (GGGA)n Simple_repeat Simple_repeat 4 178 0 443 296 30 23 chr6 1036184 1036316 -188243238 + L2 LINE L2 3139 3271 -1 1435 186 164 0 chr6 1037564 1037876 -188241678 + MSTB LTR MaLR 16 378 -48 416 326 44 62 chr6 1038268 1038495 -188241059 + HAL1b LINE L1 1 223 -1125 24 24 0 24 chr6 1038511 1038531 -188241023 + AT_rich Low_complexity Low_complexity 1 20 -21 2774 19 0 0 chr6 1038531 1038849 -188240705 + AluYb8 SINE Alu 1 318 0 24 24 0 24 chr6 1038849 1038870 -188240684 + AT_rich Low_complexity Low_complexity 20 41 0 458 287 72 32 chr6 1038870 1039121 -188240433 + HAL1b LINE L1 232 492 -856 231 230 70 30 chr6 1039130 1039230 -188240324 + HAL1b LINE L1 634 737 -611 5269 201 49 16 chr6 1039442 1040713 -188238841 - L1M3 LINE L1 -622 5558 4219 2277 85 0 0 chr6 1040713 1041006 -188238548 - AluY SINE Alu -12 299 7 5269 201 49 16 chr6 1041006 1041202 -188238352 - L1M3 LINE L1 -1961 4219 4031 569 291 65 87 chr6 1041202 1041776 -188237778 + L1MC4a LINE L1 4695 5255 -891 215 152 22 0 chr6 1041790 1041836 -188237718 + (TG)n Simple_repeat Simple_repeat 2 48 0 1910 264 34 21 chr6 1041853 1042464 -188237090 + L1MC4a LINE L1 5284 5902 -1906 2040 123 0 13 chr6 1042595 1042905 -188236649 - AluSx SINE Alu -6 306 1 22 35 0 0 chr6 1042925 1042954 -188236600 + AT_rich Low_complexity Low_complexity 1 29 0 410 217 65 65 chr6 1043487 1043625 -188235929 - MER112 DNA MER1_type -7 253 116 327 335 103 44 chr6 1043661 1044461 -188235093 - L2 LINE L2 -18 3295 2423 2056 105 21 0 chr6 1045404 1045690 -188233864 + AluSg SINE Alu 1 292 -18 234 0 0 0 chr6 1045812 1045838 -188233716 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 196 374 159 6 chr6 1046130 1046293 -188233261 + MIR SINE MIR 56 243 -19 243 0 0 0 chr6 1047041 1047068 -188232486 + (TG)n Simple_repeat Simple_repeat 2 28 0 428 188 89 0 chr6 1048621 1048722 -188230832 - L1MB2 LINE L1 0 6171 6062 2826 147 31 4 chr6 1049409 1049891 -188229663 - L1MB3 LINE L1 -10 6173 5679 1658 232 57 5 chr6 1050053 1050380 -188229174 - L1 LINE L1 -2649 3497 3143 183 100 0 0 chr6 1050380 1050410 -188229144 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1658 232 57 5 chr6 1050410 1050610 -188228944 - L1 LINE L1 -3003 3143 2955 872 176 70 20 chr6 1054204 1054403 -188225151 - AluJo SINE Alu -19 293 85 2174 104 3 0 chr6 1054845 1055153 -188224401 + AluSc SINE Alu 1 309 0 1600 167 56 44 chr6 1055167 1055276 -188224278 + L1MA5 LINE L1 5937 6043 -257 2065 102 21 0 chr6 1055276 1055559 -188223995 + AluSx SINE Alu 12 300 -12 1600 167 56 44 chr6 1055559 1055809 -188223745 + L1MA5 LINE L1 6043 6300 0 217 359 88 28 chr6 1056976 1057193 -188222361 + MIR SINE MIR 1 230 -32 345 308 51 0 chr6 1057632 1057749 -188221805 - L2 LINE L2 -5 3308 3186 335 295 36 58 chr6 1057751 1057890 -188221664 - MER5B DNA MER1_type -32 146 11 302 276 141 49 chr6 1057902 1058065 -188221489 - L2 LINE L2 -508 2806 2629 3513 195 64 12 chr6 1058545 1059236 -188220318 - MER21B LTR ERV1 -123 740 14 192 285 105 40 chr6 1059295 1059523 -188220031 - L2 LINE L2 -647 2667 2425 2466 153 50 10 chr6 1059594 1059998 -188219556 - MSTC LTR MaLR -8 420 1 2019 161 26 16 chr6 1060167 1060553 -188219001 - MLT1B LTR MaLR 0 390 1 2488 65 0 0 chr6 1061168 1061475 -188218079 + AluY SINE Alu 1 307 -4 393 275 9 28 chr6 1061545 1061654 -188217900 + L2 LINE L2 3162 3268 -4 220 331 6 0 chr6 1062026 1062198 -188217356 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 316 306 6 0 chr6 1062228 1062401 -188217153 + (CAGAGA)n Simple_repeat Simple_repeat 5 178 0 696 262 17 17 chr6 1062893 1063065 -188216489 - MER20 DNA MER1_type -10 209 38 2360 67 0 0 chr6 1064603 1064901 -188214653 + AluY SINE Alu 1 298 -13 241 250 20 50 chr6 1065291 1065391 -188214163 - L1ME4a LINE L1 -61 6060 5964 609 169 17 25 chr6 1065397 1065515 -188214039 - FLAM_C SINE Alu -14 129 13 500 261 11 44 chr6 1065635 1065815 -188213739 - MER5B DNA MER1_type 0 178 5 3311 170 18 24 chr6 1066906 1067214 -188212340 + L1MB3 LINE L1 5519 5827 -356 2381 51 0 3 chr6 1067214 1067509 -188212045 + AluY SINE Alu 1 294 -17 3311 170 18 24 chr6 1067509 1067869 -188211685 + L1MB3 LINE L1 5827 6183 0 571 240 74 88 chr6 1068341 1068607 -188210947 - L1MC4 LINE L1 0 8042 7781 451 177 10 0 chr6 1068607 1068703 -188210851 + L1MB2 LINE L1 6073 6169 -2 571 240 74 88 chr6 1068703 1068799 -188210755 - L1MC4 LINE L1 -261 7781 7685 21 0 0 0 chr6 1068810 1068831 -188210723 + AT_rich Low_complexity Low_complexity 1 21 0 522 163 17 22 chr6 1068837 1069015 -188210539 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 4061 241 60 12 chr6 1069054 1070218 -188209336 - L1MC4 LINE L1 -366 7676 6457 1397 154 16 36 chr6 1070465 1070822 -188208732 + Tigger2a DNA MER2_type 1 444 0 257 330 36 0 chr6 1071161 1071273 -188208281 - MLT1I LTR MaLR 0 409 294 361 285 42 76 chr6 1072997 1073260 -188206294 - MER102b DNA MER1_type 0 341 88 2074 118 13 0 chr6 1073675 1073980 -188205574 + AluSx SINE Alu 1 309 -3 352 335 80 4 chr6 1074046 1074285 -188205269 - MIR SINE MIR -3 259 3 195 302 16 0 chr6 1075423 1075486 -188204068 + MIR SINE MIR 82 145 -63 519 301 88 19 chr6 1075967 1076183 -188203371 - L1P LINE L1 -3089 3057 2827 505 161 32 0 chr6 1076189 1076282 -188203272 + L1PA16 LINE L1 6061 6156 -10 306 199 0 23 chr6 1077103 1077274 -188202280 + (TCTCTG)n Simple_repeat Simple_repeat 4 170 0 721 168 4 4 chr6 1077330 1077580 -188201974 + (TG)n Simple_repeat Simple_repeat 1 250 0 303 282 12 0 chr6 1078676 1078761 -188200793 - MER81 DNA DNA -27 87 2 1659 155 28 0 chr6 1079379 1079669 -188199885 - AluJo SINE Alu -14 298 1 181 194 0 28 chr6 1079812 1079848 -188199706 + L2 LINE L2 3227 3261 -11 244 234 117 97 chr6 1080647 1080792 -188198762 - MIR3 SINE MIR -30 178 31 652 94 0 0 chr6 1080800 1080885 -188198669 - AluJ/FLAM SINE Alu -217 95 11 428 247 23 40 chr6 1080949 1081123 -188198431 + L1MC5 LINE L1 7741 7911 -50 182 250 14 0 chr6 1081147 1081219 -188198335 + (TA)n Simple_repeat Simple_repeat 1 73 0 2148 101 6 19 chr6 1081356 1081673 -188197881 - AluSq SINE Alu 0 313 1 321 232 12 161 chr6 1081808 1081976 -188197578 - L2 LINE L2 -6 3307 3165 1106 202 164 13 chr6 1082124 1082441 -188197113 + MLT1A1 LTR MaLR 1 365 0 578 214 9 0 chr6 1082754 1082866 -188196688 + MER81 DNA DNA 2 114 0 21 0 0 0 chr6 1083483 1083504 -188196050 + AT_rich Low_complexity Low_complexity 1 21 0 2052 109 13 0 chr6 1084381 1084683 -188194871 - AluSq SINE Alu -7 306 1 826 199 92 24 chr6 1085102 1085308 -188194246 + MER58A DNA MER1_type 1 220 -4 2216 85 7 0 chr6 1087419 1087714 -188191840 + AluSq SINE Alu 1 297 -16 1183 109 55 0 chr6 1088311 1088494 -188191060 - L1PA14 LINE L1 -2 6159 5967 250 314 32 85 chr6 1089629 1089817 -188189737 - MIR SINE MIR -24 238 61 235 279 44 15 chr6 1090655 1090723 -188188831 - MIR3 SINE MIR -136 72 3 242 325 42 8 chr6 1090964 1091084 -188188470 + MIR SINE MIR 118 241 -21 611 327 44 31 chr6 1091104 1091330 -188188224 - MIR SINE MIR -23 239 11 2275 94 0 7 chr6 1091967 1092275 -188187279 + AluSq SINE Alu 1 306 -7 305 295 30 78 chr6 1092463 1092529 -188187025 - L1M4 LINE L1 -3316 2830 2762 2152 115 0 0 chr6 1092529 1092833 -188186721 - AluY SINE Alu -7 304 1 305 295 30 78 chr6 1092833 1092932 -188186622 - L1M4 LINE L1 -3384 2762 2673 286 277 170 0 chr6 1093451 1093563 -188185991 - L2 LINE L2 -4 3309 3179 297 167 0 0 chr6 1094088 1094136 -188185418 - L1MEd LINE L1 -5985 134 87 349 224 254 15 chr6 1094449 1094583 -188184971 + MIR SINE MIR 19 184 -78 186 351 91 0 chr6 1095121 1095198 -188184356 + MIR SINE MIR 179 262 0 261 286 31 10 chr6 1095200 1095298 -188184256 - L1MEd LINE L1 -6015 104 5 213 209 36 164 chr6 1096045 1096122 -188183432 - L2 LINE L2 -30 3283 3222 2113 110 0 3 chr6 1096122 1096422 -188183132 + AluSx SINE Alu 1 299 -13 213 209 36 164 chr6 1096422 1096454 -188183100 - L2 LINE L2 -91 3222 3188 373 316 58 23 chr6 1096470 1096641 -188182913 - MIR SINE MIR -8 254 78 650 314 47 13 chr6 1097525 1097761 -188181793 - MIR SINE MIR 0 262 19 1254 296 101 25 chr6 1097769 1098614 -188180940 - L1MC4a LINE L1 -867 5492 5272 2435 53 0 0 chr6 1098817 1099120 -188180434 - AluY SINE Alu -8 303 1 2088 103 0 3 chr6 1099583 1099874 -188179680 - AluSg SINE Alu -20 290 1 1149 134 0 6 chr6 1100479 1100651 -188178903 - Tigger1 DNA MER2_type 0 2418 2248 381 136 0 45 chr6 1100653 1100719 -188178835 - Tigger1 DNA MER2_type -2355 63 1 2037 96 27 7 chr6 1101066 1101358 -188178196 - AluSg SINE Alu -11 299 2 322 288 12 0 chr6 1101942 1102022 -188177532 + L2 LINE L2 3184 3264 -49 21 36 0 0 chr6 1102216 1102244 -188177310 + AT_rich Low_complexity Low_complexity 1 28 0 2030 118 20 0 chr6 1102318 1102622 -188176932 + AluSx SINE Alu 1 310 -2 232 250 50 19 chr6 1103089 1103249 -188176305 + (CA)n Simple_repeat Simple_repeat 1 165 0 2235 88 0 16 chr6 1103441 1103747 -188175807 + AluSx SINE Alu 1 301 -11 264 179 0 39 chr6 1104250 1104328 -188175226 + (CAGG)n Simple_repeat Simple_repeat 1 75 0 1030 253 101 58 chr6 1104462 1105117 -188174437 - L1MC5 LINE L1 -30 7931 7249 728 103 9 0 chr6 1105191 1105307 -188174247 + (GGAA)n Simple_repeat Simple_repeat 3 119 0 24 0 0 0 chr6 1106370 1106394 -188173160 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 1106721 1106750 -188172804 + AT_rich Low_complexity Low_complexity 1 29 0 225 94 0 0 chr6 1107916 1107948 -188171606 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 429 304 32 0 chr6 1109857 1109982 -188169572 - L2 LINE L2 0 3313 3185 403 335 54 16 chr6 1110165 1110350 -188169204 - MIR3 SINE MIR -7 201 10 309 330 57 31 chr6 1111639 1111833 -188167721 - MIR3 SINE MIR -7 201 3 182 167 62 0 chr6 1113112 1113160 -188166394 + GA-rich Low_complexity Low_complexity 4 54 0 213 242 55 66 chr6 1114659 1114750 -188164804 - L2 LINE L2 -9 3263 3174 1733 193 42 28 chr6 1115115 1115473 -188164081 - MLT1A1 LTR MaLR -2 363 1 220 302 35 43 chr6 1115508 1115624 -188163930 - L2 LINE L2 0 3272 3158 307 224 42 159 chr6 1116944 1117208 -188162346 + MER112 DNA MER1_type 1 233 -27 1497 206 59 6 chr6 1117737 1118057 -188161497 - MER58B DNA MER1_type -4 337 1 1716 151 27 38 chr6 1118628 1118920 -188160634 + AluJo SINE Alu 1 289 -23 288 0 0 0 chr6 1119865 1119897 -188159657 + (TG)n Simple_repeat Simple_repeat 2 33 0 2604 192 51 25 chr6 1119897 1120206 -188159348 - L1MB7 LINE L1 -11 6173 5874 1838 134 0 81 chr6 1120206 1120526 -188159028 - AluJo SINE Alu -14 298 5 2604 192 51 25 chr6 1120526 1120821 -188158733 - L1MB7 LINE L1 -310 5874 5553 1611 232 21 3 chr6 1120851 1121226 -188158328 - L1MA10 LINE L1 -7 6327 5946 2661 183 13 37 chr6 1121260 1121736 -188157818 + L1MA9 LINE L1 5042 5483 -819 236 136 0 0 chr6 1121736 1121780 -188157774 + LTR66 LTR ERVL 393 436 -174 2661 183 13 37 chr6 1121780 1122215 -188157339 + L1MA9 LINE L1 5483 5927 -375 318 26 0 0 chr6 1123023 1123062 -188156492 + (CCCTAA)n Simple_repeat Simple_repeat 6 44 0 1552 201 87 13 chr6 1125049 1125438 -188154116 + MSTC LTR MaLR 10 427 -1 1718 196 102 8 chr6 1127101 1127463 -188152091 + MSTD LTR MaLR 1 396 0 458 289 64 17 chr6 1127579 1127752 -188151802 - MLT1J LTR MaLR -330 181 1 631 243 10 2 chr6 1128587 1128759 -188150795 + L1P1 LINE L1 5604 5777 -362 604 240 8 0 chr6 1128968 1129097 -188150457 + AluJo SINE Alu 2 131 -181 1092 46 0 0 chr6 1129097 1129228 -188150326 - L1P2 LINE L1 -385 5770 5640 25 31 0 0 chr6 1129241 1129273 -188150281 + AT_rich Low_complexity Low_complexity 1 32 0 1207 151 0 0 chr6 1129273 1129445 -188150109 + AluJo SINE Alu 118 289 -23 573 290 106 44 chr6 1131370 1131691 -188147863 + MLT1J LTR MaLR 1 341 -170 397 274 115 0 chr6 1132456 1132569 -188146985 + MER94 DNA DNA 2 127 -7 2048 114 31 3 chr6 1134740 1135030 -188144524 + AluSx SINE Alu 1 298 -14 1228 63 11 6 chr6 1135052 1135227 -188144327 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 378 258 31 31 chr6 1135807 1135935 -188143619 - LTR67 LTR ERVL 0 557 430 447 184 0 0 chr6 1136326 1136413 -188143141 + (TG)n Simple_repeat Simple_repeat 1 87 0 1737 164 9 50 chr6 1138027 1138350 -188141204 + AluJo SINE Alu 1 310 -2 238 232 0 53 chr6 1139820 1140010 -188139544 + CT-rich Low_complexity Low_complexity 1 180 0 662 182 75 44 chr6 1140986 1141145 -188138409 + L1ME LINE L1 138 301 -5904 759 277 152 16 chr6 1141179 1141759 -188137795 + L1ME LINE L1 703 1207 -4998 5658 131 51 30 chr6 1142033 1142383 -188137171 - L1MA5 LINE L1 -3 6297 5956 2320 84 13 0 chr6 1142383 1142682 -188136872 - AluSg SINE Alu -7 303 1 5658 131 51 30 chr6 1142682 1143862 -188135692 - L1MA5 LINE L1 -344 5956 4550 2296 61 7 0 chr6 1145664 1145983 -188133571 - AluY SINE Alu 0 321 1 2273 95 17 0 chr6 1146437 1146733 -188132821 + AluSp SINE Alu 1 301 -12 240 226 65 0 chr6 1147039 1147101 -188132453 + L2 LINE L2 3159 3224 -48 4376 257 83 12 chr6 1147284 1149209 -188130345 + L1MEc LINE L1 741 2805 -3410 515 77 0 121 chr6 1149209 1149261 -188130293 - MADE1 DNA Mariner 0 80 42 2147 114 7 14 chr6 1149261 1149558 -188129996 + AluSp SINE Alu 1 295 -18 515 77 0 121 chr6 1149558 1149596 -188129958 - MADE1 DNA Mariner -38 42 1 4376 257 83 12 chr6 1149596 1149877 -188129677 + L1MEc LINE L1 2805 3064 -3151 275 242 21 42 chr6 1151042 1151136 -188128418 - Charlie7 DNA MER1_type -5 2607 2516 4343 119 45 126 chr6 1151136 1151870 -188127684 + Tigger3b DNA MER2_type 2 794 -2235 993 89 0 0 chr6 1151870 1151994 -188127560 - AluSp/q SINE Alu -17 296 173 4343 119 45 126 chr6 1151994 1152407 -188127147 + Tigger3b DNA MER2_type 794 1177 -1852 2502 84 0 0 chr6 1152407 1152717 -188126837 - AluY SINE Alu -1 310 1 4343 119 45 126 chr6 1152717 1152769 -188126785 + Tigger3b DNA MER2_type 1177 1232 0 668 94 44 44 chr6 1154714 1154894 -188124660 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 418 220 7 11 chr6 1154894 1155177 -188124377 + GA-rich Low_complexity Low_complexity 1 281 0 2076 146 108 10 chr6 1156565 1156955 -188122599 - MSTA LTR MaLR 0 428 1 451 268 8 0 chr6 1157482 1157605 -188121949 - MER58B DNA MER1_type 0 341 218 718 196 39 67 chr6 1157876 1158055 -188121499 + MER58A DNA MER1_type 43 216 -8 215 154 0 26 chr6 1158994 1159033 -188120521 + CT-rich Low_complexity Low_complexity 4 41 0 3605 121 13 0 chr6 1159290 1159836 -188119718 - L1PB4 LINE L1 -4 6152 5600 260 232 0 18 chr6 1161852 1161908 -188117646 + CT-rich Low_complexity Low_complexity 3 57 0 657 225 62 25 chr6 1162978 1163138 -188116416 + MER63A DNA MER1_type 10 175 -35 5303 122 46 21 chr6 1163376 1163895 -188115659 + MER4D LTR ERV1 1 506 -366 2619 106 8 13 chr6 1163895 1164272 -188115282 + THE1C LTR MaLR 1 375 0 10262 105 40 45 chr6 1164272 1165858 -188113696 + THE1C-int LTR MaLR 1 1578 -2 5303 122 46 21 chr6 1165858 1165871 -188113683 + MER4D LTR ERV1 506 517 -355 2410 129 11 11 chr6 1165871 1166244 -188113310 + THE1C LTR MaLR 1 373 -2 5303 122 46 21 chr6 1166244 1166560 -188112994 + MER4D LTR ERV1 517 872 0 375 193 0 36 chr6 1166743 1166826 -188112728 - Charlie1 DNA MER1_type -7 2754 2675 2900 206 72 20 chr6 1166878 1167568 -188111986 - Charlie1 DNA MER1_type -225 2536 1811 2646 92 29 46 chr6 1167574 1167988 -188111566 - L1PA15 LINE L1 -2 6163 5757 1599 83 0 62 chr6 1167989 1168230 -188111324 + L1P4 LINE L1 5470 5695 -470 683 292 40 40 chr6 1168235 1168605 -188110949 - Charlie1 DNA MER1_type -954 1807 1438 200 135 0 54 chr6 1168625 1168662 -188110892 - MER5A DNA MER1_type -152 37 3 22 56 0 0 chr6 1168900 1168936 -188110618 + AT_rich Low_complexity Low_complexity 1 36 0 1721 39 5 0 chr6 1168937 1169145 -188110409 - L1PA4 LINE L1 0 6155 5947 405 331 7 0 chr6 1169360 1169505 -188110049 + MIR SINE MIR 117 262 0 25 0 0 0 chr6 1170114 1170139 -188109415 + AT_rich Low_complexity Low_complexity 1 25 0 282 199 62 155 chr6 1170154 1170201 -188109353 - MLT1L LTR MaLR -4 611 561 2610 7 0 0 chr6 1170201 1170478 -188109076 + AluYa5 SINE Alu 35 311 0 282 199 62 155 chr6 1170478 1170591 -188108963 - MLT1L LTR MaLR -54 561 466 1164 157 42 0 chr6 1172017 1172234 -188107320 + L1MA9 LINE L1 5919 6144 -168 661 138 36 29 chr6 1172243 1172381 -188107173 - L1MA7 LINE L1 -1 6290 6152 982 149 36 10 chr6 1172381 1172573 -188106981 + L1MA9 LINE L1 6114 6312 0 305 340 43 7 chr6 1172654 1172795 -188106759 - MIR3 SINE MIR -15 193 48 239 274 154 8 chr6 1174336 1174453 -188105101 - MLT1L LTR MaLR -106 436 303 * 439 232 220 24 chr6 1174429 1174684 -188104870 - MLT1G3 LTR MaLR -200 395 4 228 192 19 19 chr6 1176152 1176204 -188103350 + MER94 DNA DNA 6 57 -77 1233 152 22 9 chr6 1176273 1176497 -188103057 + L1MA8 LINE L1 6054 6280 -11 276 231 0 0 chr6 1176515 1176567 -188102987 + MER94 DNA DNA 68 119 -15 1832 209 104 14 chr6 1176676 1177139 -188102415 + MLT1D LTR MaLR 1 653 -1 686 191 92 13 chr6 1177182 1177334 -188102220 - AluJb SINE Alu -12 300 137 367 271 80 0 chr6 1177597 1177774 -188101780 - MIR SINE MIR 0 262 68 445 251 57 11 chr6 1177846 1178021 -188101533 - MIR SINE MIR -34 228 46 301 253 12 12 chr6 1178644 1178727 -188100827 + MIR3 SINE MIR 108 190 -18 205 318 0 0 chr6 1178748 1178811 -188100743 + GA-rich Low_complexity Low_complexity 3 65 0 2482 85 3 0 chr6 1179672 1179978 -188099576 - AluSp SINE Alu -6 307 1 2218 95 3 3 chr6 1180416 1180699 -188098855 - AluSc SINE Alu -26 283 1 7012 69 8 0 chr6 1181177 1182180 -188097374 - L1PA7 LINE L1 -4 6150 5145 2143 69 10 3 chr6 1182181 1182470 -188097084 + L1PA7 LINE L1 4873 5163 -983 1739 162 98 0 chr6 1182909 1183224 -188096330 + MER7A DNA MER2_type 1 344 -2 250 262 16 0 chr6 1185256 1185317 -188094237 - L2 LINE L2 -25 3247 3186 2160 112 25 0 chr6 1187535 1187821 -188091733 + AluSg SINE Alu 1 293 -17 23 33 0 0 chr6 1188808 1188838 -188090716 + AT_rich Low_complexity Low_complexity 1 30 0 282 303 31 31 chr6 1189072 1189234 -188090320 + L1ME LINE L1 306 467 -5905 395 271 25 109 chr6 1189403 1189877 -188089677 + L1ME LINE L1 1186 1609 -4775 1576 112 0 14 chr6 1189878 1190101 -188089453 - AluSg/x SINE Alu -5 305 86 1028 188 5 30 chr6 1190170 1190372 -188089182 - AluJb SINE Alu -9 303 107 274 291 94 0 chr6 1190381 1190508 -188089046 + MIR SINE MIR 124 262 0 346 270 99 34 chr6 1191262 1191495 -188088059 - MIR SINE MIR -1 261 14 201 175 0 0 chr6 1192431 1192471 -188087083 + CT-rich Low_complexity Low_complexity 1 40 0 242 253 51 0 chr6 1192999 1193078 -188086476 + L2 LINE L2 3190 3272 0 384 141 62 18 chr6 1193533 1193817 -188085737 + (TAGA)n Simple_repeat Simple_repeat 1 296 0 504 72 0 0 chr6 1193830 1193899 -188085655 + (CAGA)n Simple_repeat Simple_repeat 3 71 0 2355 237 78 62 chr6 1194298 1194872 -188084682 + L1MEc LINE L1 34 631 -5765 540 148 30 20 chr6 1194872 1194973 -188084581 + U13 snRNA snRNA 2 103 -1 2355 237 78 62 chr6 1194973 1195360 -188084194 + L1MEc LINE L1 631 1010 -5386 402 303 8 0 chr6 1195458 1195580 -188083974 + MER94 DNA DNA 5 127 -7 2056 120 62 14 chr6 1197849 1198207 -188081347 + THE1C LTR MaLR 1 375 0 911 168 7 19 chr6 1198334 1198489 -188081065 + FRAM SINE Alu 1 152 -24 274 217 14 0 chr6 1199265 1199334 -188080220 + MIR3 SINE MIR 118 187 -21 26 30 0 0 chr6 1200336 1200369 -188079185 + AT_rich Low_complexity Low_complexity 1 33 0 251 246 204 24 chr6 1200497 1200664 -188078890 + MIR SINE MIR 66 262 0 45 69 0 0 chr6 1200672 1200759 -188078795 + AT_rich Low_complexity Low_complexity 1 87 0 513 232 176 67 chr6 1200892 1201462 -188078092 + L1ME4a LINE L1 5481 6121 0 1043 133 62 0 chr6 1202277 1202472 -188077082 - L1MA8 LINE L1 -1 6290 6084 551 277 94 89 chr6 1202549 1202921 -188076633 + MLT1J LTR MaLR 107 480 -31 2555 216 104 3 chr6 1203184 1203894 -188075660 + L1MEc LINE L1 2502 3283 -2932 308 287 132 49 chr6 1203947 1204212 -188075342 + L2 LINE L2 3023 3309 -4 286 394 38 22 chr6 1204431 1204748 -188074806 - L2 LINE L2 -357 2957 2636 526 232 151 16 chr6 1205521 1205706 -188073848 + MIR SINE MIR 47 256 -6 874 225 35 22 chr6 1206720 1206951 -188072603 + MIR SINE MIR 12 245 -17 202 257 0 54 chr6 1209531 1209605 -188069949 - MIR SINE MIR -128 134 65 198 309 60 0 chr6 1211957 1212041 -188067513 - L2 LINE L2 -460 2854 2766 2411 199 17 2 chr6 1212582 1213059 -188066495 - MER31A LTR ERV1 0 485 2 219 255 0 109 chr6 1213480 1213664 -188065890 + (CATCC)n Simple_repeat Simple_repeat 4 167 0 209 295 46 29 chr6 1213881 1214054 -188065500 + (CCCCAG)n Simple_repeat Simple_repeat 2 177 0 219 310 55 0 chr6 1214068 1214213 -188065341 + (CCCCAG)n Simple_repeat Simple_repeat 2 154 0 201 182 55 18 chr6 1214231 1214286 -188065268 + GA-rich Low_complexity Low_complexity 1 57 0 698 150 87 40 chr6 1214631 1214804 -188064750 - MER53 DNA DNA 0 189 9 2200 92 0 20 chr6 1215687 1215982 -188063572 + AluSc SINE Alu 1 289 -20 309 276 130 73 chr6 1216315 1216363 -188063191 + MIR SINE MIR 49 93 -169 1797 141 47 81 chr6 1216363 1216747 -188062807 + THE1C LTR MaLR 5 375 0 309 276 130 73 chr6 1216747 1216890 -188062664 + MIR SINE MIR 93 251 -11 240 339 46 9 chr6 1217101 1217210 -188062344 + MIR SINE MIR 20 132 -76 587 219 55 34 chr6 1217634 1217780 -188061774 - MER63 DNA MER1_type -57 779 5 348 219 77 45 chr6 1218768 1218923 -188060631 + L1MC/D LINE L1 3068 3227 -2919 604 310 87 46 chr6 1219485 1220623 -188058931 + L1MC/D LINE L1 3623 4836 -1310 276 305 64 47 chr6 1220674 1221018 -188058536 + L1MC/D LINE L1 4782 5131 -1015 406 283 102 58 chr6 1221150 1221773 -188057781 + L1MC/D LINE L1 5175 5824 -747 578 193 7 43 chr6 1221777 1221917 -188057637 + L1ME2 LINE L1 5701 5835 -329 632 289 4 41 chr6 1221954 1222196 -188057358 + L1ME2 LINE L1 5919 6151 -13 293 0 27 0 chr6 1222919 1222956 -188056598 + (TG)n Simple_repeat Simple_repeat 2 39 0 267 183 127 14 chr6 1223218 1223289 -188056265 + MER69 DNA AcHobo 2448 2526 0 1600 174 11 3 chr6 1223669 1223951 -188055603 + AluJb SINE Alu 1 284 -28 466 230 122 0 chr6 1225121 1225260 -188054294 + MIR SINE MIR 76 231 -31 23 54 0 0 chr6 1225310 1225347 -188054207 + AT_rich Low_complexity Low_complexity 1 37 0 991 156 146 35 chr6 1226936 1227135 -188052419 - Tigger2a DNA MER2_type -26 418 198 316 209 198 0 chr6 1227124 1227215 -188052339 - Tigger2a DNA MER2_type -325 109 1 * 353 271 64 53 chr6 1227657 1227845 -188051709 - MIR SINE MIR -26 236 47 813 228 25 10 chr6 1228149 1228351 -188051203 + MER20 DNA MER1_type 1 205 -14 372 59 0 0 chr6 1228390 1228441 -188051113 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 280 216 0 81 chr6 1230385 1230496 -188049058 - MIR3 SINE MIR -18 190 89 1052 142 6 11 chr6 1230541 1230717 -188048837 - L1MA1 LINE L1 0 6302 6128 180 0 0 0 chr6 1232950 1232970 -188046584 + (TTC)n Simple_repeat Simple_repeat 2 21 0 848 156 0 8 chr6 1232975 1233103 -188046451 - FLAM_C SINE Alu -16 127 1 205 279 0 0 chr6 1233168 1233229 -188046325 - MIR SINE MIR -80 128 68 298 266 46 18 chr6 1233615 1233724 -188045830 - L2 LINE L2 -18 3295 3184 618 333 92 51 chr6 1233729 1234251 -188045303 - L2 LINE L2 -998 2316 1738 1534 65 0 0 chr6 1234251 1234450 -188045104 - L1PA4 LINE L1 0 6155 5957 618 333 92 51 chr6 1234450 1234851 -188044703 - L2 LINE L2 -1576 1738 1355 319 275 75 81 chr6 1235246 1235541 -188044013 - L2 LINE L2 -2604 710 418 1010 156 75 15 chr6 1235657 1235856 -188043698 - MER20 DNA MER1_type 0 219 9 196 191 106 0 chr6 1237691 1237738 -188041816 - L2 LINE L2 0 3313 3262 792 212 31 45 chr6 1237813 1238035 -188041519 - MER20 DNA MER1_type 0 219 1 856 287 5 0 chr6 1238842 1239065 -188040489 - MER58A DNA MER1_type 0 224 1 210 338 0 0 chr6 1239260 1239331 -188040223 - MIR3 SINE MIR -49 159 89 849 202 17 77 chr6 1240927 1241160 -188038394 + MER20 DNA MER1_type 1 219 0 2083 107 41 7 chr6 1241740 1242031 -188037523 + AluSx SINE Alu 1 301 -11 263 26 51 0 chr6 1244890 1244929 -188034625 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 189 107 0 0 chr6 1245163 1245191 -188034363 + (CACCAT)n Simple_repeat Simple_repeat 5 32 0 569 207 22 0 chr6 1245282 1245509 -188034045 - L1MA9 LINE L1 -21 6291 5964 2461 77 3 0 chr6 1245518 1245818 -188033736 - AluSp SINE Alu -12 301 1 484 246 60 24 chr6 1248208 1248375 -188031179 - MIR SINE MIR -73 189 17 241 178 0 0 chr6 1249078 1249123 -188030431 - L1MC4 LINE L1 -1339 6703 6659 21 0 0 0 chr6 1250085 1250106 -188029448 + AT_rich Low_complexity Low_complexity 1 21 0 230 324 0 14 chr6 1250125 1250199 -188029355 + L2 LINE L2 3019 3091 -181 621 247 95 55 chr6 1250793 1251156 -188028398 + LTR67 LTR ERVL 116 548 -9 342 268 78 33 chr6 1253468 1253621 -188025933 + MIR SINE MIR 26 185 -77 1000 133 40 0 chr6 1253966 1254139 -188025415 + L1MA8 LINE L1 6111 6290 -1 730 214 330 15 chr6 1254247 1254384 -188025170 + MLT1F LTR MaLR 1 94 -448 2437 86 0 0 chr6 1254384 1254688 -188024866 + AluSg SINE Alu 1 304 -6 730 214 330 15 chr6 1254688 1254962 -188024592 + MLT1F LTR MaLR 94 542 0 217 219 0 0 chr6 1254969 1255010 -188024544 + (CA)n Simple_repeat Simple_repeat 2 42 0 2993 224 122 22 chr6 1256148 1257177 -188022377 + L1M4 LINE L1 3909 5040 -1106 5752 119 7 8 chr6 1257177 1258772 -188020782 - L1PA13 LINE L1 0 6163 4549 218 125 25 0 chr6 1260489 1260529 -188019025 + T-rich Low_complexity Low_complexity 3 43 0 1663 128 132 0 chr6 1260698 1260964 -188018590 - AluSq SINE Alu -11 302 2 2162 115 0 10 chr6 1261383 1261695 -188017859 - AluSc SINE Alu 0 309 1 2154 172 13 0 chr6 1262551 1262929 -188016625 + MLT1B LTR MaLR 1 383 -7 195 69 0 0 chr6 1264344 1264373 -188015181 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 240 273 0 0 chr6 1265144 1265199 -188014355 + (CA)n Simple_repeat Simple_repeat 2 56 0 318 23 23 0 chr6 1265472 1265515 -188014039 + AluY SINE Alu 1 44 -256 2508 81 3 0 chr6 1265515 1265824 -188013730 + AluY SINE Alu 1 310 -1 1894 135 17 14 chr6 1266049 1266345 -188013209 + AluSx SINE Alu 1 297 -15 365 219 14 0 chr6 1266345 1266418 -188013136 + Tigger7 DNA MER2_type 1 74 -265 14670 125 20 6 chr6 1266427 1268620 -188010934 + Tigger1 DNA MER2_type 2 2227 -191 1182 82 44 0 chr6 1268876 1269061 -188010493 - AluY SINE Alu 0 307 116 883 180 28 28 chr6 1269066 1269244 -188010310 + Tigger1 DNA MER2_type 2241 2418 0 1424 114 0 82 chr6 1269459 1269714 -188009840 + Tigger7 DNA MER2_type 2246 2479 -8 398 300 23 8 chr6 1269979 1270109 -188009445 - MIR3 SINE MIR -40 168 37 320 318 227 14 chr6 1270112 1270754 -188008800 - L3 LINE CR1 -1 1576 798 739 254 28 19 chr6 1270789 1271003 -188008551 + L1MA9 LINE L1 6087 6300 0 397 304 108 19 chr6 1271232 1271390 -188008164 - L3 LINE CR1 -1072 505 334 393 100 0 0 chr6 1271617 1271667 -188007887 + AluJ/FLAM SINE Alu 10 59 -243 228 356 7 52 chr6 1272820 1272955 -188006599 + MIR SINE MIR 20 148 -114 1778 166 14 14 chr6 1273087 1273376 -188006178 + AluJo SINE Alu 4 292 -20 2049 187 62 2 chr6 1274607 1275030 -188004524 + L1MB3 LINE L1 5736 6183 0 1638 160 71 11 chr6 1275043 1275324 -188004230 + AluJo SINE Alu 1 298 -14 235 274 137 74 chr6 1276362 1276421 -188003133 + L2 LINE L2 2967 3021 -251 2072 127 0 48 chr6 1276421 1276737 -188002817 + AluJo SINE Alu 1 301 -11 235 274 137 74 chr6 1276737 1276947 -188002607 + L2 LINE L2 3021 3253 -19 1256 217 75 70 chr6 1278441 1278878 -188000676 - MER63C DNA MER1_type 0 1556 258 1838 141 62 3 chr6 1280295 1280601 -187998953 - MER2 DNA MER2_type 0 345 22 2683 145 121 64 chr6 1280601 1281182 -187998372 + LTR18B LTR ERVL 1 614 0 3591 118 30 4 chr6 1281378 1281938 -187997616 + L1MA4A LINE L1 5717 6291 -12 3798 177 8 28 chr6 1283012 1283770 -187995784 + L1MB3 LINE L1 5434 6176 -7 299 305 28 71 chr6 1283914 1284055 -187995499 + L2 LINE L2 3134 3268 -4 237 387 13 0 chr6 1284356 1284511 -187995043 - L2 LINE L2 -2493 821 665 685 176 58 88 chr6 1284616 1284665 -187994889 - MER3 DNA MER1_type -8 201 152 653 225 8 0 chr6 1284665 1284794 -187994760 + FLAM_A SINE Alu 1 130 -3 685 176 58 88 chr6 1284794 1284949 -187994605 - MER3 DNA MER1_type -57 152 3 712 30 20 20 chr6 1285255 1285356 -187994198 + L1PA13 LINE L1 6063 6163 0 1124 189 7 88 chr6 1285604 1285900 -187993654 + MLT1A1 LTR MaLR 44 315 -50 365 309 132 7 chr6 1285972 1286124 -187993430 + MER5B DNA MER1_type 3 173 -5 273 322 132 0 chr6 1286674 1286826 -187992728 - MIR3 SINE MIR -7 201 30 378 239 43 15 chr6 1287020 1287152 -187992402 - MIR SINE MIR -61 147 24 1200 204 109 18 chr6 1288365 1288694 -187990860 + MLT1A1 LTR MaLR 7 365 0 198 103 0 0 chr6 1288749 1288778 -187990776 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2153 200 85 14 chr6 1288846 1289352 -187990202 - MER67A LTR ERV1 -1 542 1 29 70 0 0 chr6 1290823 1290880 -187988674 + AT_rich Low_complexity Low_complexity 1 57 0 962 237 74 18 chr6 1291247 1291655 -187987899 + MLT1J LTR MaLR 1 511 0 297 164 66 0 chr6 1293207 1293268 -187986286 - MIR SINE MIR -72 190 126 240 174 148 61 chr6 1294492 1294607 -187984947 - MER112 DNA MER1_type -91 169 45 259 248 53 71 chr6 1294762 1294875 -187984679 + MIR SINE MIR 80 190 -72 1683 184 125 3 chr6 1295015 1295368 -187984186 + MSTD LTR MaLR 1 396 0 904 309 58 42 chr6 1296156 1296616 -187982938 - L1ME1 LINE L1 -310 5856 5391 665 275 39 5 chr6 1296680 1296887 -187982667 - MIR SINE MIR -26 236 23 252 265 153 24 chr6 1297628 1297798 -187981756 + MIR SINE MIR 34 225 -37 207 335 67 12 chr6 1298476 1298640 -187980914 - MIR SINE MIR -62 200 28 437 349 0 0 chr6 1299460 1299612 -187979942 - MIR3 SINE MIR -10 198 47 200 333 0 0 chr6 1299670 1299724 -187979830 + (CA)n Simple_repeat Simple_repeat 1 54 0 315 232 0 0 chr6 1299750 1299832 -187979722 + (CATA)n Simple_repeat Simple_repeat 4 85 0 253 69 0 103 chr6 1299836 1299894 -187979660 - MER4-int LTR ERV1 -5436 1162 1111 522 241 0 0 chr6 1299901 1300046 -187979508 + (CATA)n Simple_repeat Simple_repeat 1 145 0 288 0 0 0 chr6 1301463 1301495 -187978059 + (CA)n Simple_repeat Simple_repeat 2 33 0 204 303 40 0 chr6 1301800 1301876 -187977678 - MIR SINE MIR -118 144 66 3611 148 5 45 chr6 1301877 1302983 -187976571 + L1M2 LINE L1 4729 5799 -501 301 125 0 0 chr6 1303010 1303058 -187976496 - L1M1 LINE L1 -471 5829 5782 226 282 48 8 chr6 1303745 1303869 -187975685 + LTR16C LTR ERVL 363 491 0 910 199 62 93 chr6 1305396 1305783 -187973771 + L1MC5 LINE L1 7198 7572 -389 1466 321 30 38 chr6 1305809 1306704 -187972850 + L1MEc LINE L1 36 923 -5473 2427 103 0 0 chr6 1306704 1307014 -187972540 - AluSg SINE Alu 0 310 1 706 292 86 15 chr6 1307016 1307423 -187972131 + L1MEc LINE L1 1021 1456 -4940 240 232 37 12 chr6 1307428 1307510 -187972044 + (TA)n Simple_repeat Simple_repeat 1 84 0 760 249 29 24 chr6 1307515 1307724 -187971830 + L1ME1 LINE L1 5953 6162 -4 762 268 58 22 chr6 1307754 1308067 -187971487 + L1MC5 LINE L1 7603 7926 -35 431 245 46 33 chr6 1308263 1308414 -187971140 - MLT1J LTR MaLR -2 509 357 207 0 0 0 chr6 1309013 1309036 -187970518 + (A)n Simple_repeat Simple_repeat 1 23 0 216 0 0 0 chr6 1310158 1310182 -187969372 + (A)n Simple_repeat Simple_repeat 1 24 0 270 246 62 0 chr6 1310867 1310932 -187968622 + MER94 DNA DNA 1 69 -65 7902 164 29 21 chr6 1311002 1312286 -187967268 + L1PB4 LINE L1 3783 5055 -1101 1845 152 3 20 chr6 1312286 1312582 -187966972 - AluJo SINE Alu -21 291 1 7902 164 29 21 chr6 1312582 1313457 -187966097 + L1PB4 LINE L1 5055 5962 -194 2260 51 0 116 chr6 1313457 1313792 -187965762 - AluY SINE Alu -15 296 1 7902 164 29 21 chr6 1313792 1313988 -187965566 + L1PB4 LINE L1 5962 6155 -1 27 0 0 0 chr6 1313988 1314015 -187965539 + AT_rich Low_complexity Low_complexity 1 27 0 244 289 133 43 chr6 1314479 1314640 -187964914 + L1MC4a LINE L1 5823 5968 -1840 2141 105 67 64 chr6 1314640 1315029 -187964525 + MLT1B LTR MaLR 1 390 0 244 289 133 43 chr6 1315029 1315168 -187964386 + L1MC4a LINE L1 5968 6150 -1658 786 202 0 0 chr6 1315171 1315300 -187964254 + FLAM_A SINE Alu 1 129 -4 1408 221 120 14 chr6 1315372 1315729 -187963825 + MSTD LTR MaLR 2 396 0 222 37 0 0 chr6 1315945 1315972 -187963582 + (CA)n Simple_repeat Simple_repeat 2 28 0 426 85 0 0 chr6 1316167 1316226 -187963328 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 196 217 0 22 chr6 1316681 1316727 -187962827 - MIR SINE MIR -190 72 28 260 224 0 15 chr6 1319048 1319115 -187960439 - L2 LINE L2 -63 3250 3185 23 0 0 0 chr6 1322120 1322143 -187957411 + GC_rich Low_complexity Low_complexity 1 23 0 55 62 0 0 chr6 1322565 1322662 -187956892 + GC_rich Low_complexity Low_complexity 1 97 0 21 57 0 0 chr6 1322889 1322924 -187956630 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 1323001 1323023 -187956531 + GC_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 1323677 1323701 -187955853 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 1323850 1323877 -187955677 + AT_rich Low_complexity Low_complexity 1 27 0 190 288 0 17 chr6 1327208 1327267 -187952287 - MIR SINE MIR -131 77 20 1080 67 8 0 chr6 1327643 1327777 -187951777 + AluSp SINE Alu 1 135 -178 1461 109 5 0 chr6 1327777 1327979 -187951575 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1327983 1328043 -187951511 + AluSp SINE Alu 73 132 -181 1424 119 5 0 chr6 1328045 1328247 -187951307 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1328251 1328311 -187951243 + AluSp SINE Alu 73 132 -181 1039 67 7 7 chr6 1328313 1328448 -187951106 + AluSp SINE Alu 1 135 -178 1461 109 5 0 chr6 1328448 1328650 -187950904 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1328654 1328714 -187950840 + AluSp SINE Alu 73 132 -181 1434 119 5 0 chr6 1328716 1328918 -187950636 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1328922 1328982 -187950572 + AluSp SINE Alu 73 132 -181 1053 83 0 0 chr6 1328984 1329116 -187950438 + AluSp SINE Alu 1 132 -181 1484 104 5 0 chr6 1329118 1329320 -187950234 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1329324 1329384 -187950170 + AluSp SINE Alu 73 132 -181 1055 83 0 0 chr6 1329386 1329518 -187950036 + AluSp SINE Alu 1 132 -181 2363 87 10 0 chr6 1329520 1329829 -187949725 + AluSp SINE Alu 1 312 -1 1557 163 3 48 chr6 1331593 1331882 -187947672 + AluJo SINE Alu 29 304 -8 498 238 163 13 chr6 1332745 1332988 -187946566 + L1ME1 LINE L1 5887 6159 -7 316 222 14 14 chr6 1334949 1335021 -187944533 - Tigger5 DNA MER2_type -1 2322 2251 * 386 164 0 0 chr6 1334990 1335045 -187944509 - Tigger5 DNA MER2_type -2268 55 1 1025 96 0 0 chr6 1335887 1336023 -187943531 - AluSg/x SINE Alu -1 311 176 299 143 0 0 chr6 1336095 1336144 -187943410 + L1MA8 LINE L1 6116 6164 -127 410 321 139 9 chr6 1336288 1336612 -187942942 - LTR16C LTR ERVL -39 452 87 367 223 57 76 chr6 1336729 1336886 -187942668 + MER63A DNA MER1_type 55 208 -2 1113 227 32 4 chr6 1337059 1337310 -187942244 + MIR SINE MIR 5 262 0 5897 141 20 15 chr6 1337596 1338594 -187940960 - L1MA8 LINE L1 -25 6266 5264 2818 49 0 0 chr6 1338630 1338956 -187940598 - LTR17 LTR ERV1 -454 326 1 4743 50 2 2 chr6 1338957 1339515 -187940039 - HERV17 LTR ERV1 -1 8625 8068 * 5669 62 3 1 chr6 1339506 1340198 -187939356 - HERV17 LTR ERV1 -3304 5322 4630 210 105 0 0 chr6 1340237 1340275 -187939279 + (TA)n Simple_repeat Simple_repeat 1 38 0 2032 135 0 30 chr6 1340751 1341054 -187938500 + AluSq SINE Alu 1 294 -19 2338 105 0 0 chr6 1341428 1341724 -187937830 - AluSg SINE Alu -14 296 1 1125 283 83 38 chr6 1342203 1342758 -187936796 + L1MC4a LINE L1 5298 5877 -1931 340 304 0 36 chr6 1343053 1343165 -187936389 + GA-rich Low_complexity Low_complexity 1 108 0 195 279 16 0 chr6 1344760 1344821 -187934733 - MIR3 SINE MIR -37 171 110 327 364 114 13 chr6 1345406 1345634 -187933920 + L3 LINE CR1 342 592 -985 687 237 46 98 chr6 1345686 1345958 -187933596 + L2 LINE L2 3006 3260 -53 2321 107 3 0 chr6 1345958 1346266 -187933288 + AluSx SINE Alu 1 309 -3 687 237 46 98 chr6 1346266 1346318 -187933236 + L2 LINE L2 3260 3313 0 741 296 35 43 chr6 1346332 1346677 -187932877 + L3 LINE CR1 682 1023 -554 342 251 97 58 chr6 1346724 1346871 -187932683 + L1MC4a LINE L1 5665 5824 -1984 1802 161 10 20 chr6 1346871 1347175 -187932379 + AluJb SINE Alu 1 301 -11 342 251 97 58 chr6 1347175 1347234 -187932320 + L1MC4a LINE L1 5824 5879 -1929 244 314 35 0 chr6 1347306 1347392 -187932162 + MER5A DNA MER1_type 18 106 -83 637 164 49 16 chr6 1347456 1347578 -187931976 - L1MB4 LINE L1 -3 6177 6052 227 357 143 9 chr6 1347679 1347791 -187931763 - L2 LINE L2 0 3272 3146 228 200 0 0 chr6 1347854 1347894 -187931660 + L1MB3 LINE L1 5551 5590 -722 2197 176 51 7 chr6 1347994 1348408 -187931146 + L1MA9 LINE L1 5832 6263 -49 1198 186 19 27 chr6 1349950 1350208 -187929346 + L1MCa LINE L1 6 261 -6165 * 4039 183 65 26 chr6 1350202 1351242 -187928312 + L1MCa LINE L1 775 1773 -4653 1495 185 26 15 chr6 1351242 1351512 -187928042 - AluJb SINE Alu -37 275 3 4039 183 65 26 chr6 1351512 1352627 -187926927 + L1MCa LINE L1 1773 3110 -3316 3378 225 5 16 chr6 1352614 1353409 -187926145 + L1MCa LINE L1 4145 4930 -1496 * 2476 138 14 32 chr6 1353469 1353862 -187925692 + L1MB3 LINE L1 5748 6134 -49 1584 186 0 38 chr6 1353862 1354180 -187925374 + AluJo SINE Alu 1 306 -6 2476 138 14 32 chr6 1354180 1354227 -187925327 + L1MB3 LINE L1 6134 6180 -3 426 20 0 0 chr6 1354799 1354850 -187924704 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 202 284 75 0 chr6 1354885 1354952 -187924602 - MIR SINE MIR -104 158 87 2173 108 0 3 chr6 1355922 1356209 -187923345 + AluSg SINE Alu 1 286 -24 288 0 0 0 chr6 1356458 1356490 -187923064 + (CA)n Simple_repeat Simple_repeat 1 32 0 6308 242 28 29 chr6 1358162 1360432 -187919122 + L1M4 LINE L1 16 2424 -4401 2598 97 8 0 chr6 1360432 1360784 -187918770 - THE1A LTR MaLR 0 355 1 4430 87 3 7 chr6 1360784 1361356 -187918198 - THE1A-int LTR MaLR 0 1580 1011 931 229 22 11 chr6 1361356 1361631 -187917923 + L1M4 LINE L1 3542 3819 -2825 8004 217 14 6 chr6 1361667 1363846 -187915708 + L1MB7 LINE L1 2108 4324 -2320 1292 154 14 10 chr6 1363836 1364137 -187915417 + L1MB7 LINE L1 4222 4432 -2212 * 257 174 0 0 chr6 1364144 1364190 -187915364 + GA-rich Low_complexity Low_complexity 3 48 0 454 126 0 23 chr6 1364310 1364397 -187915157 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 1073 116 6 0 chr6 1364421 1364594 -187914960 + (GGGAA)n Simple_repeat Simple_repeat 1 174 0 4057 168 55 42 chr6 1364594 1365183 -187914371 + L1MB7 LINE L1 5699 6279 -403 2330 85 0 26 chr6 1365183 1365489 -187914065 + AluSx SINE Alu 1 298 -14 2033 120 53 0 chr6 1365499 1365783 -187913771 + AluSx SINE Alu 1 299 -13 4057 168 55 42 chr6 1365783 1366020 -187913534 + L1MB7 LINE L1 6287 6547 -135 2416 99 0 0 chr6 1366020 1366332 -187913222 + AluSp SINE Alu 1 312 -1 4057 168 55 42 chr6 1366332 1366383 -187913171 + L1MB7 LINE L1 6547 6596 -86 1419 164 50 23 chr6 1366383 1366645 -187912909 + Tigger2a DNA MER2_type 1 269 -165 482 201 54 0 chr6 1366648 1367462 -187912092 + (TA)n Simple_repeat Simple_repeat 1 857 0 324 135 0 0 chr6 1367489 1367541 -187912013 + L1MB8 LINE L1 6115 6166 -12 476 313 84 39 chr6 1367544 1367982 -187911572 - L1MC/D LINE L1 -2096 5712 5255 194 287 43 21 chr6 1368154 1368248 -187911306 + L2 LINE L2 1397 1492 -1822 10009 203 68 46 chr6 1368511 1368578 -187910976 - Charlie1 DNA MER1_type 0 2761 2697 1961 113 76 0 chr6 1368578 1368853 -187910701 + AluSx SINE Alu 3 298 -14 10009 203 68 46 chr6 1368853 1369562 -187909992 - Charlie1 DNA MER1_type -64 2697 2005 1251 212 59 14 chr6 1369562 1369850 -187909704 - AluJo SINE Alu -1 301 1 10009 203 68 46 chr6 1369850 1370519 -187909035 - Charlie1 DNA MER1_type -756 2005 1352 3784 60 2 2 chr6 1370519 1370989 -187908565 + L1PA5 LINE L1 5685 6154 0 10009 203 68 46 chr6 1370989 1371002 -187908552 - Charlie1 DNA MER1_type -1409 1352 1341 703 211 16 0 chr6 1371002 1371130 -187908424 + AluJo SINE Alu 1 130 -172 10009 203 68 46 chr6 1371130 1372364 -187907190 - Charlie1 DNA MER1_type -1420 1341 6 2029 168 13 3 chr6 1373283 1373669 -187905885 - MLT1B LTR MaLR 0 390 1 284 308 0 19 chr6 1373720 1373824 -187905730 + L2 LINE L2 3170 3271 -1 22 0 0 0 chr6 1374613 1374635 -187904919 + AT_rich Low_complexity Low_complexity 1 22 0 1620 192 7 16 chr6 1375614 1375921 -187903633 + AluJo SINE Alu 7 310 -2 1781 176 20 3 chr6 1376497 1376803 -187902751 - AluJb SINE Alu -1 311 1 268 242 0 0 chr6 1378336 1378398 -187901156 + L2 LINE L2 3250 3311 -2 2154 116 51 25 chr6 1378446 1378801 -187900753 - THE1B LTR MaLR 0 364 1 707 247 0 6 chr6 1378832 1378990 -187900564 + AluJo SINE Alu 136 292 -20 268 288 76 47 chr6 1379155 1379391 -187900163 + L1ME LINE L1 3931 4173 -1973 525 221 39 0 chr6 1379445 1379572 -187899982 + MER103 DNA DNA 35 166 0 309 356 46 16 chr6 1379713 1379907 -187899647 + MIR SINE MIR 14 213 -49 449 282 231 4 chr6 1379922 1380195 -187899359 + L1ME LINE L1 5412 5746 -375 371 236 57 57 chr6 1380482 1380622 -187898932 - L1M4 LINE L1 -2892 3254 3115 601 336 58 20 chr6 1380637 1381121 -187898433 + LTR67 LTR ERVL 22 557 0 415 291 67 62 chr6 1381124 1381560 -187897994 - L1M4 LINE L1 -3034 3112 2675 354 331 18 6 chr6 1381570 1381733 -187897821 + MER5A DNA MER1_type 1 165 -24 243 368 82 28 chr6 1381775 1381957 -187897597 - L3b LINE CR1 -61 1522 1331 611 291 34 6 chr6 1382383 1382562 -187896992 + MLT1L LTR MaLR 431 614 -1 215 346 79 0 chr6 1382652 1382779 -187896775 - L3b LINE CR1 -343 1240 1104 760 265 103 44 chr6 1383187 1383594 -187895960 + L2 LINE L2 2883 3313 0 292 351 70 52 chr6 1383742 1384087 -187895467 - MLT1K LTR MaLR -231 357 7 26 104 0 0 chr6 1384361 1384457 -187895097 + AT_rich Low_complexity Low_complexity 1 96 0 408 191 114 15 chr6 1384550 1384681 -187894873 + ORSL DNA AcHobo 1 144 -131 2236 71 7 0 chr6 1385923 1386240 -187893314 - AluSg SINE Alu 0 320 2 24 32 0 0 chr6 1387032 1387063 -187892491 + GC_rich Low_complexity Low_complexity 1 31 0 707 268 38 0 chr6 1387835 1388018 -187891536 - MIR SINE MIR -8 254 65 309 286 62 34 chr6 1389803 1389981 -187889573 + L1MC5 LINE L1 7749 7931 -30 23 33 0 0 chr6 1390659 1390689 -187888865 + GC_rich Low_complexity Low_complexity 1 30 0 319 259 0 0 chr6 1390758 1390843 -187888711 + G-rich Low_complexity Low_complexity 3 87 0 357 280 77 28 chr6 1394990 1395133 -187884421 + MIR SINE MIR 5 154 -108 315 0 0 0 chr6 1396056 1396091 -187883463 + (CA)n Simple_repeat Simple_repeat 1 35 0 239 173 19 0 chr6 1397419 1397471 -187882083 + CT-rich Low_complexity Low_complexity 2 54 0 189 0 0 0 chr6 1398668 1398689 -187880865 + (CCA)n Simple_repeat Simple_repeat 3 23 0 29 60 0 0 chr6 1398742 1398792 -187880762 + GC_rich Low_complexity Low_complexity 1 50 0 387 0 0 0 chr6 1400360 1400403 -187879151 + (CA)n Simple_repeat Simple_repeat 1 43 0 1532 134 5 0 chr6 1405264 1405488 -187874066 - AluJo SINE Alu 0 312 88 805 197 26 57 chr6 1406295 1406488 -187873066 - MER5A DNA MER1_type 0 189 3 444 227 20 0 chr6 1407005 1407155 -187872399 + GA-rich Low_complexity Low_complexity 2 154 0 347 222 8 0 chr6 1407188 1407305 -187872249 + GA-rich Low_complexity Low_complexity 2 119 0 223 226 0 36 chr6 1407336 1407420 -187872134 + GA-rich Low_complexity Low_complexity 3 83 0 23 0 0 0 chr6 1407896 1407919 -187871635 + AT_rich Low_complexity Low_complexity 1 23 0 1955 213 12 5 chr6 1408840 1409268 -187870286 + L1MA7 LINE L1 5371 5801 -490 423 200 27 0 chr6 1409271 1409346 -187870208 - Charlie3 DNA MER1_type -8 2702 2626 2083 177 58 33 chr6 1409357 1409842 -187869712 + L1MA7 LINE L1 5795 6291 0 768 179 0 0 chr6 1410593 1410908 -187868646 + (CA)n Simple_repeat Simple_repeat 1 315 0 713 171 0 11 chr6 1410955 1411136 -187868418 + (CA)n Simple_repeat Simple_repeat 2 180 0 588 218 0 0 chr6 1411178 1411538 -187868016 + (CA)n Simple_repeat Simple_repeat 1 360 0 263 321 0 21 chr6 1411545 1411685 -187867869 + (CATA)n Simple_repeat Simple_repeat 2 138 0 496 212 6 6 chr6 1411689 1411868 -187867686 + (CA)n Simple_repeat Simple_repeat 1 179 0 1749 171 74 15 chr6 1412715 1413093 -187866461 - MLT1B LTR MaLR -8 382 1 2300 108 0 0 chr6 1413927 1414222 -187865332 + AluSx SINE Alu 1 295 -17 2272 74 7 17 chr6 1416447 1416746 -187862808 + AluY SINE Alu 1 296 -15 2370 64 4 0 chr6 1418572 1418892 -187860662 + AluY SINE Alu 1 321 0 784 176 56 42 chr6 1419127 1419343 -187860211 + MER20 DNA MER1_type 1 219 0 1855 148 0 48 chr6 1419402 1419713 -187859841 + AluJb SINE Alu 1 296 -16 21 0 0 0 chr6 1419713 1419734 -187859820 + AT_rich Low_complexity Low_complexity 1 21 0 1987 151 3 7 chr6 1419745 1420043 -187859511 + AluJo SINE Alu 1 297 -15 480 264 85 0 chr6 1421089 1421218 -187858336 - Charlie8 DNA MER1_type -2273 144 5 298 333 67 9 chr6 1423298 1423403 -187856151 + MIR3 SINE MIR 95 205 -3 538 287 96 57 chr6 1423707 1423916 -187855638 - MIR SINE MIR -31 231 15 800 137 8 15 chr6 1424571 1424702 -187854852 + AluSq/x SINE Alu 2 131 -181 266 275 22 11 chr6 1424904 1424995 -187854559 - MIR SINE MIR -122 140 49 225 0 0 0 chr6 1425718 1425743 -187853811 + (TG)n Simple_repeat Simple_repeat 2 26 0 387 137 4 39 chr6 1425744 1425830 -187853724 - FLAM_A SINE Alu -1 132 54 2050 126 3 0 chr6 1425871 1426181 -187853373 - AluSx SINE Alu -1 311 1 717 135 23 23 chr6 1426190 1426323 -187853231 - FLAM_C SINE Alu 0 133 1 651 284 12 0 chr6 1426850 1427019 -187852535 - MER58A DNA MER1_type -9 215 45 196 200 0 100 chr6 1427217 1427267 -187852287 - MIR SINE MIR -2 260 216 695 194 58 13 chr6 1427297 1427452 -187852102 + FRAM SINE Alu 1 161 -15 363 269 112 30 chr6 1427508 1427642 -187851912 - MIR SINE MIR -96 166 22 285 315 112 12 chr6 1427663 1427833 -187851721 + MIR SINE MIR 43 228 -34 1730 144 33 23 chr6 1427900 1428205 -187851349 + MER44D DNA MER2_type 32 609 0 4251 181 81 12 chr6 1428221 1429886 -187849668 - L1MB8 LINE L1 -54 6124 4346 23 0 0 0 chr6 1429886 1429909 -187849645 + AT_rich Low_complexity Low_complexity 1 23 0 436 256 75 67 chr6 1429915 1430169 -187849385 - L1M4 LINE L1 -1616 4530 4275 21 36 0 0 chr6 1430218 1430246 -187849308 + AT_rich Low_complexity Low_complexity 1 28 0 200 231 0 58 chr6 1430342 1430394 -187849160 - L2 LINE L2 0 3313 3265 * 282 234 0 0 chr6 1430371 1430439 -187849115 + MIR SINE MIR 24 91 -117 619 256 106 0 chr6 1430444 1430624 -187848930 + MIR SINE MIR 64 262 0 220 271 158 55 chr6 1430636 1431034 -187848520 - L2 LINE L2 -56 3257 2819 1460 167 23 20 chr6 1431155 1431455 -187848099 - L1MA5 LINE L1 -19 6281 5981 271 297 156 21 chr6 1431529 1431909 -187847645 - MLT1H1 LTR MaLR -4 551 103 812 256 56 16 chr6 1432533 1432783 -187846771 + MIR SINE MIR 2 261 -1 1308 120 69 0 chr6 1432783 1432999 -187846555 + Tigger4(Zombi) DNA MER2_type 1 231 -2500 1886 89 44 173 chr6 1433001 1433207 -187846347 + Tigger4(Zombi) DNA MER2_type 2333 2457 -274 1947 142 0 0 chr6 1433207 1433518 -187846036 - AluSx SINE Alu -1 311 1 1886 89 44 173 chr6 1433518 1433740 -187845814 + Tigger4(Zombi) DNA MER2_type 2457 2706 -25 2095 110 3 3 chr6 1435345 1435646 -187843908 - AluSq SINE Alu -12 301 1 1722 159 3 16 chr6 1435663 1435978 -187843576 + AluJb SINE Alu 1 311 -1 936 181 0 0 chr6 1436361 1436538 -187843016 - AluJ SINE Alu -16 296 120 45480 32 3 1 chr6 1436540 1442676 -187836878 - L1PA3 LINE L1 -8 6147 1 731 187 0 15 chr6 1442682 1442816 -187836738 - AluJ SINE Alu -170 132 1 245 296 51 0 chr6 1442956 1443054 -187836500 + MIR SINE MIR 105 207 -55 2913 199 65 21 chr6 1443341 1443429 -187836125 + L1MB3 LINE L1 5495 5578 -605 2099 112 3 0 chr6 1443429 1443723 -187835831 + AluSx SINE Alu 1 295 -17 2913 199 65 21 chr6 1443723 1444292 -187835262 + L1MB3 LINE L1 5578 6181 -2 859 129 0 30 chr6 1445221 1445353 -187834201 - AluJ SINE Alu -174 128 1 220 53 53 0 chr6 1446016 1446054 -187833500 + C-rich Low_complexity Low_complexity 39 78 0 442 268 263 16 chr6 1446056 1446634 -187832920 + L2 LINE L2 1928 2648 -666 187 254 0 16 chr6 1447030 1447093 -187832461 + L2 LINE L2 3198 3259 -54 1782 243 27 78 chr6 1447127 1447277 -187832277 + L1ME1 LINE L1 5240 5396 -770 382 157 36 0 chr6 1447277 1447360 -187832194 + L1MB3 LINE L1 6096 6181 -2 1782 243 27 78 chr6 1447360 1447806 -187831748 + L1ME1 LINE L1 5396 5797 -369 1766 144 53 0 chr6 1447806 1448090 -187831464 + AluSx SINE Alu 1 299 -13 1782 243 27 78 chr6 1448090 1448328 -187831226 + L1ME1 LINE L1 5797 6046 -120 602 258 5 75 chr6 1448494 1448610 -187830944 + MER45A DNA AcHobo 1 102 -1479 2103 96 0 0 chr6 1448610 1448925 -187830629 - AluSg SINE Alu 0 315 1 602 258 5 75 chr6 1448925 1448993 -187830561 + MER45A DNA AcHobo 102 173 -5 688 253 135 47 chr6 1449509 1449806 -187829748 + MER2 DNA MER2_type 2 324 -21 733 131 57 0 chr6 1449875 1449997 -187829557 + LOR1a LTR ERV1 1 129 -368 * 1561 139 80 24 chr6 1449995 1450064 -187829490 + LOR1b LTR ERV1 158 222 -239 2199 131 56 8 chr6 1450064 1450422 -187829132 - THE1C LTR MaLR 0 375 1 1561 139 80 24 chr6 1450422 1450640 -187828914 + LOR1b LTR ERV1 222 461 0 257 213 227 0 chr6 1450677 1450752 -187828802 - MER5A DNA MER1_type -89 100 9 225 296 45 45 chr6 1450813 1450901 -187828653 + MIR SINE MIR 44 131 -131 430 248 67 0 chr6 1451001 1451106 -187828448 - MIR SINE MIR -98 164 53 1690 145 0 4 chr6 1451118 1451387 -187828167 - AluJb SINE Alu -13 299 32 388 222 118 30 chr6 1451601 1451736 -187827818 - HAL1b LINE L1 -1 1347 1201 21 36 0 0 chr6 1451898 1451926 -187827628 + AT_rich Low_complexity Low_complexity 1 28 0 398 324 67 57 chr6 1451951 1452250 -187827304 - L1ME LINE L1 -547 5574 5273 1868 104 26 0 chr6 1452301 1452570 -187826984 + AluSx SINE Alu 30 305 -7 255 318 15 8 chr6 1452654 1452786 -187826768 - L1ME LINE L1 -1071 5075 4943 917 251 77 40 chr6 1452877 1453256 -187826298 - L1ME1 LINE L1 -15 6151 5759 1820 193 110 68 chr6 1453256 1453800 -187825754 + LTR60 LTR ERV1 1 567 -19 979 267 69 57 chr6 1453847 1454323 -187825231 - L1ME1 LINE L1 -419 5765 5284 368 311 45 42 chr6 1454351 1454708 -187824846 - L1ME LINE L1 -1299 4847 4490 3874 107 17 72 chr6 1455071 1455174 -187824380 - L1PB3 LINE L1 -23 6131 6024 1840 158 0 3 chr6 1455174 1455477 -187824077 - AluJb SINE Alu -10 302 1 3874 107 17 72 chr6 1455477 1455579 -187823975 - L1PB3 LINE L1 -130 6024 5624 651 260 60 91 chr6 1455579 1455765 -187823789 - L1MC2 LINE L1 -391 5953 5763 2591 39 0 0 chr6 1455765 1456076 -187823478 - AluY SINE Alu 0 311 1 651 260 60 91 chr6 1456076 1456405 -187823149 - L1MC2 LINE L1 -581 5763 5454 496 237 132 7 chr6 1456850 1457002 -187822552 - MLT1J LTR MaLR -15 496 326 554 253 33 20 chr6 1457066 1457216 -187822338 - MLT1J LTR MaLR -352 159 8 496 248 97 7 chr6 1457472 1457617 -187821937 - MLT1I LTR MaLR -210 199 42 1445 204 32 3 chr6 1458233 1458542 -187821012 - LTR23 LTR ERV1 -3 434 117 1373 156 124 0 chr6 1458545 1458802 -187820752 + AluJb SINE Alu 12 300 -12 468 153 135 0 chr6 1458807 1458918 -187820636 - LTR23 LTR ERV1 -311 126 1 425 335 25 37 chr6 1459086 1459331 -187820223 - MLT1J1 LTR MaLR -13 433 192 1591 188 114 112 chr6 1459341 1459971 -187819583 - LTR8A LTR ERV1 -3 724 94 2770 131 66 31 chr6 1459971 1460507 -187819047 - LTR35 LTR ERV1 0 618 1 377 211 79 0 chr6 1460507 1460583 -187818971 - LTR8 LTR ERV1 -609 82 1 1247 143 52 13 chr6 1460604 1460834 -187818720 - MLT1B LTR MaLR -12 378 140 2921 188 20 5 chr6 1460836 1461422 -187818132 + LTR49 LTR ERV1 1 595 0 4288 148 60 65 chr6 1461424 1462670 -187816884 + LTR49-int LTR ERV1 1 1470 -4476 707 143 21 43 chr6 1462672 1462812 -187816742 + FLAM_C SINE Alu 2 138 -5 2145 97 0 3 chr6 1462844 1463133 -187816421 - AluSx SINE Alu -24 288 1 282 306 14 0 chr6 1463212 1463284 -187816270 + tRNA-Glu-GAG tRNA tRNA 3 75 0 3870 199 31 44 chr6 1463284 1464166 -187815388 + MER57B-int LTR ERV1 1563 2432 -3899 1472 110 18 9 chr6 1464175 1464394 -187815160 - pTR5 LTR ERV1 -2046 392 172 317 169 73 83 chr6 1464399 1464495 -187815059 - LTR30 LTR ERV1 -77 702 544 4913 121 28 24 chr6 1464500 1465458 -187814096 - pTR5 LTR ERV1 -418 2020 743 1086 156 142 14 chr6 1465455 1465667 -187813887 + MER57B-int LTR ERV1 2436 2674 -3657 * 767 206 0 0 chr6 1465680 1465806 -187813748 + AluJ SINE Alu 2 127 -185 310 208 54 92 chr6 1465820 1465950 -187813604 + L1MCa LINE L1 1941 2065 -4361 302 124 72 10 chr6 1465950 1466047 -187813507 + (TA)n Simple_repeat Simple_repeat 1 103 0 872 187 24 0 chr6 1466051 1466217 -187813337 + AluJ SINE Alu 131 300 -12 6017 157 28 84 chr6 1466218 1467654 -187811900 + MER57B-int LTR ERV1 2666 4020 -2311 1962 117 36 23 chr6 1467654 1467961 -187811593 - L1PA15 LINE L1 -1 6164 5854 6017 157 28 84 chr6 1467961 1467996 -187811558 + MER57B-int LTR ERV1 4020 4055 -2276 13056 120 28 18 chr6 1468003 1468871 -187810683 + MER57B-int LTR ERV1 4210 5068 -1263 2067 121 3 0 chr6 1468871 1469169 -187810385 - AluSx SINE Alu -13 299 1 13056 120 28 18 chr6 1469169 1469648 -187809906 + MER57B-int LTR ERV1 5068 5541 -790 2870 138 5 5 chr6 1469648 1470082 -187809472 + MER57B LTR ERV1 1 434 0 13056 120 28 18 chr6 1470082 1470671 -187808883 + MER57B-int LTR ERV1 5541 6172 -159 2156 111 0 3 chr6 1470671 1470969 -187808585 + AluSq SINE Alu 1 297 -16 13056 120 28 18 chr6 1470969 1471131 -187808423 + MER57B-int LTR ERV1 6172 6331 0 2435 140 44 2 chr6 1471131 1471539 -187808015 + LTR49 LTR ERV1 1 425 -170 1005 123 0 0 chr6 1471543 1471689 -187807865 + AluSg/x SINE Alu 162 307 -5 700 174 112 12 chr6 1471689 1471850 -187807704 + LTR49 LTR ERV1 419 595 0 775 153 0 60 chr6 1471850 1472000 -187807554 - MLT1B LTR MaLR -249 141 1 2326 61 7 0 chr6 1472440 1472735 -187806819 + AluY SINE Alu 1 297 -14 2262 157 130 46 chr6 1473321 1473602 -187805952 - LTR49 LTR ERV1 0 595 339 1648 146 66 10 chr6 1473602 1473890 -187805664 + AluSx SINE Alu 1 304 -8 2262 157 130 46 chr6 1473890 1474155 -187805399 - LTR49 LTR ERV1 -256 339 3 4559 128 51 69 chr6 1474367 1474724 -187804830 - MER4D LTR ERV1 0 903 541 1945 139 0 0 chr6 1474724 1475019 -187804535 + AluJb SINE Alu 1 295 -17 4559 128 51 69 chr6 1475019 1475258 -187804296 - MER4D LTR ERV1 -362 541 299 2230 104 0 0 chr6 1475258 1475555 -187803999 - AluSq SINE Alu -16 297 1 4559 128 51 69 chr6 1475555 1475876 -187803678 - MER4D LTR ERV1 -604 299 1 1708 185 21 108 chr6 1475986 1476528 -187803026 - MER4A LTR ERV1 -3 695 161 2225 89 0 0 chr6 1476528 1476820 -187802734 - AluSq SINE Alu -12 301 10 1708 185 21 108 chr6 1476820 1476969 -187802585 - MER4A LTR ERV1 -537 161 1 296 288 27 51 chr6 1477228 1477452 -187802102 - L1MC4a LINE L1 -349 5825 5689 384 309 88 34 chr6 1478871 1478989 -187800565 - MIR SINE MIR 0 262 127 1949 217 65 26 chr6 1478989 1479524 -187800030 + LTR38 LTR ERV1 1 556 0 384 309 88 34 chr6 1479524 1479609 -187799945 - MIR SINE MIR -135 127 48 1050 153 5 16 chr6 1480402 1480592 -187798962 + L1MB3 LINE L1 5976 6163 -20 877 108 38 25 chr6 1480601 1481103 -187798451 + (TAGA)n Simple_repeat Simple_repeat 1 508 0 3212 147 31 7 chr6 1481627 1482212 -187797342 - L1MB3 LINE L1 0 6183 5585 3442 193 70 91 chr6 1482684 1483401 -187796153 + L1MD2 LINE L1 5336 6067 -292 4453 55 2 4 chr6 1483401 1483949 -187795605 + L1PA8 LINE L1 5622 6168 -4 198 0 0 0 chr6 1483952 1483974 -187795580 + (CA)n Simple_repeat Simple_repeat 1 22 0 3442 193 70 91 chr6 1483974 1484288 -187795266 + L1MD2 LINE L1 6069 6349 -10 226 271 34 0 chr6 1484612 1484671 -187794883 + (CATG)n Simple_repeat Simple_repeat 2 62 0 266 317 110 24 chr6 1535103 1535267 -187744287 - MLT1I LTR MaLR 0 409 232 2722 112 60 0 chr6 1535556 1535958 -187743596 - MSTA LTR MaLR -2 426 1 497 276 35 0 chr6 1536046 1536216 -187743338 + MIR SINE MIR 87 262 0 32 26 0 0 chr6 1536560 1536599 -187742955 + AT_rich Low_complexity Low_complexity 1 39 0 1505 156 30 50 chr6 1536599 1536763 -187742791 - AluJo SINE Alu -16 296 139 1819 87 9 0 chr6 1536763 1536993 -187742561 - AluSp SINE Alu -11 302 71 1505 156 30 50 chr6 1536993 1537130 -187742424 - AluJo SINE Alu -173 139 1 242 257 29 0 chr6 1537681 1537751 -187741803 + LTR67 LTR ERVL 431 502 -55 595 268 168 9 chr6 1537883 1538282 -187741272 + Charlie2 DNA MER1_type 74 589 -2273 955 224 53 86 chr6 1538325 1538525 -187741029 + Charlie2 DNA MER1_type 2030 2235 -627 1617 165 49 8 chr6 1538525 1538792 -187740762 + AluJo SINE Alu 1 278 -34 955 224 53 86 chr6 1538792 1539077 -187740477 + Charlie2 DNA MER1_type 2235 2499 -363 1277 205 52 46 chr6 1539077 1539404 -187740150 + L1MB8 LINE L1 5849 6177 -1 1679 171 3 24 chr6 1539413 1539705 -187739849 + AluJo SINE Alu 1 286 -26 204 40 0 0 chr6 1539714 1539739 -187739815 + (CA)n Simple_repeat Simple_repeat 2 26 0 471 254 30 60 chr6 1539739 1539964 -187739590 + Charlie2 DNA MER1_type 2502 2721 -141 1592 271 135 6 chr6 1539965 1540460 -187739094 + MER69 DNA AcHobo 1 559 -667 233 242 152 38 chr6 1540430 1540562 -187738992 + MER69 DNA AcHobo 2254 2400 -126 * 363 134 20 174 chr6 1540554 1540620 -187738934 + Charlie2 DNA MER1_type 2736 2768 -94 1743 114 0 0 chr6 1540620 1540848 -187738706 + AluSc SINE Alu 65 292 -17 363 134 20 174 chr6 1540848 1540930 -187738624 + Charlie2 DNA MER1_type 2768 2861 -1 1779 281 90 52 chr6 1541042 1541368 -187738186 + HERVL LTR ERVL 2050 2362 -3402 2408 93 3 0 chr6 1541368 1541678 -187737876 + AluY SINE Alu 1 311 0 1779 281 90 52 chr6 1541678 1542176 -187737378 + HERVL LTR ERVL 2362 2905 -2859 360 43 0 0 chr6 1542288 1542334 -187737220 + (TG)n Simple_repeat Simple_repeat 1 46 0 1525 149 29 58 chr6 1542396 1542705 -187736849 + AluJo SINE Alu 1 300 -12 266 230 103 58 chr6 1542706 1542793 -187736761 + HERVL LTR ERVL 3139 3229 -2535 386 328 54 17 chr6 1542907 1543153 -187736401 + HERVL LTR ERVL 5111 5369 -221 439 313 20 7 chr6 1544005 1544155 -187735399 + LTR67 LTR ERVL 385 536 -21 207 172 0 69 chr6 1544559 1544617 -187734937 + CT-rich Low_complexity Low_complexity 3 56 0 2366 79 3 7 chr6 1545254 1545558 -187733996 + AluSp SINE Alu 1 303 -10 339 44 0 0 chr6 1546666 1546711 -187732843 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 802 166 14 21 chr6 1546711 1546856 -187732698 - FRAM SINE Alu -32 144 1 242 299 39 26 chr6 1546898 1547052 -187732502 - MIR SINE MIR -19 243 88 2292 97 10 0 chr6 1547329 1547628 -187731926 + AluSx SINE Alu 1 302 -10 30 27 0 0 chr6 1547628 1547665 -187731889 + AT_rich Low_complexity Low_complexity 1 37 0 204 40 0 0 chr6 1547905 1547930 -187731624 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1968 151 143 5 chr6 1548069 1548441 -187731113 + MSTA LTR MaLR 6 428 0 21 36 0 0 chr6 1548460 1548488 -187731066 + AT_rich Low_complexity Low_complexity 1 28 0 1987 151 0 0 chr6 1548488 1548773 -187730781 - AluSx SINE Alu -27 285 1 1527 229 65 26 chr6 1548776 1549343 -187730211 - L1MC5 LINE L1 -58 7903 7315 273 302 128 29 chr6 1549501 1549673 -187729881 + MIR SINE MIR 20 208 -54 789 204 56 45 chr6 1549696 1550086 -187729468 - MSTD LTR MaLR -52 344 1 876 185 49 19 chr6 1550715 1550920 -187728634 + MIR SINE MIR 24 234 -28 189 325 112 48 chr6 1551145 1551351 -187728203 + L2 LINE L2 2945 3163 -109 411 301 30 63 chr6 1551665 1551967 -187727587 - L1ME3A LINE L1 -232 5938 5647 247 211 35 0 chr6 1551991 1552048 -187727506 + L2 LINE L2 3214 3272 0 276 269 86 107 chr6 1552701 1552898 -187726656 - MLT1L LTR MaLR -415 200 8 2503 69 3 28 chr6 1553824 1554143 -187725411 + AluY SINE Alu 1 311 0 1025 252 79 84 chr6 1554224 1555018 -187724536 + L1MEc LINE L1 827 1617 -4779 1716 162 32 19 chr6 1555018 1555326 -187724228 + AluJo SINE Alu 1 312 0 1025 252 79 84 chr6 1555326 1555502 -187724052 + L1MEc LINE L1 1617 1792 -4604 1420 208 46 8 chr6 1555563 1555914 -187723640 - L1M4 LINE L1 -1394 5563 5200 870 92 108 0 chr6 1555938 1556058 -187723496 + AluSq/x SINE Alu 1 133 -179 2289 113 3 0 chr6 1556083 1556385 -187723169 + AluSp SINE Alu 1 303 -10 6060 114 28 3 chr6 1556392 1556605 -187722949 - L1M1 LINE L1 -4099 3466 3260 1886 164 13 13 chr6 1556605 1556909 -187722645 - AluJb SINE Alu -6 306 3 6060 114 28 3 chr6 1556909 1557653 -187721901 - L1M1 LINE L1 -4305 3260 2485 5570 239 38 32 chr6 1557658 1559191 -187720363 - L1M4 LINE L1 -2451 4506 3018 810 50 0 0 chr6 1559191 1559292 -187720262 + L1PA5 LINE L1 6053 6153 -1 5570 239 38 32 chr6 1559292 1559838 -187719716 - L1M4 LINE L1 -3939 3018 2476 7649 223 52 20 chr6 1560018 1562303 -187717251 - L1M4 LINE L1 -4550 2409 9 781 239 117 4 chr6 1562459 1562828 -187716726 + MLT1G LTR MaLR 144 589 -1 819 218 88 10 chr6 1563460 1563653 -187715901 - Charlie8 DNA MER1_type -2209 208 1 212 292 0 0 chr6 1568924 1568996 -187710558 + L3 LINE CR1 1080 1151 -426 236 309 95 16 chr6 1571276 1571528 -187708026 + L1ME LINE L1 5615 5886 -284 2173 124 7 7 chr6 1571545 1571844 -187707710 + AluSq SINE Alu 1 299 -14 534 329 67 53 chr6 1572079 1572228 -187707326 + L1MC4a LINE L1 4410 4556 -1590 2377 93 0 3 chr6 1572228 1572530 -187707024 + AluSx SINE Alu 1 301 -11 534 329 67 53 chr6 1572530 1573147 -187706407 + L1MC4a LINE L1 4556 5186 -960 347 162 20 40 chr6 1573164 1573263 -187706291 + L1MC5 LINE L1 7636 7732 -229 216 214 0 0 chr6 1573279 1573335 -187706219 + (CA)n Simple_repeat Simple_repeat 1 56 0 1423 277 97 11 chr6 1573453 1574118 -187705436 + L1MC4a LINE L1 5175 5398 -748 1854 142 13 13 chr6 1576236 1576545 -187703009 - AluJo SINE Alu -1 311 3 354 211 24 8 chr6 1576752 1577007 -187702547 + (TG)n Simple_repeat Simple_repeat 1 259 0 2062 143 0 6 chr6 1577894 1578208 -187701346 - AluSx SINE Alu 0 312 1 231 264 138 46 chr6 1578210 1578297 -187701257 - L2 LINE L2 -2 3270 3176 213 265 20 0 chr6 1578580 1578629 -187700925 + L2 LINE L2 3240 3289 -24 195 42 0 0 chr6 1578726 1578750 -187700804 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 1331 230 83 49 chr6 1580343 1580611 -187698943 - MER82 DNA MER2_type -203 450 160 1755 167 16 32 chr6 1580611 1580923 -187698631 + AluJo SINE Alu 1 307 -5 1331 230 83 49 chr6 1580923 1581085 -187698469 - MER82 DNA MER2_type -493 160 5 453 19 0 0 chr6 1581907 1581961 -187697593 + (CA)n Simple_repeat Simple_repeat 1 54 0 1809 181 48 0 chr6 1582017 1582348 -187697206 + L1PA16 LINE L1 5802 6148 -18 487 245 10 50 chr6 1582353 1582553 -187697001 + L1MC4 LINE L1 7472 7663 -379 231 114 0 0 chr6 1583418 1583453 -187696101 + (TG)n Simple_repeat Simple_repeat 1 35 0 274 312 54 48 chr6 1585211 1585397 -187694157 + Charlie2 DNA MER1_type 30 216 -2646 457 165 0 0 chr6 1586204 1586283 -187693271 + HY4 scRNA scRNA 5 83 -10 306 0 0 0 chr6 1590081 1590115 -187689439 + (CA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr6 1590114 1590134 -187689420 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 246 259 0 0 chr6 1590134 1590192 -187689362 + (TA)n Simple_repeat Simple_repeat 2 59 0 190 347 53 0 chr6 1591869 1591944 -187687610 + MIR3 SINE MIR 89 167 -41 203 138 0 0 chr6 1592091 1592120 -187687434 + (CCTG)n Simple_repeat Simple_repeat 1 29 0 206 333 39 0 chr6 1592536 1592614 -187686940 + L2 LINE L2 3233 3313 0 356 274 98 13 chr6 1592625 1592778 -187686776 + MER104 DNA Tc2 8 173 -7 408 314 65 0 chr6 1592803 1592956 -187686598 + MIR SINE MIR 80 242 -20 48 32 0 0 chr6 1599270 1599332 -187680222 + GC_rich Low_complexity Low_complexity 1 62 0 42 20 0 0 chr6 1599575 1599624 -187679930 + GC_rich Low_complexity Low_complexity 1 49 0 252 119 0 75 chr6 1599908 1599986 -187679568 + (CCCGG)n Simple_repeat Simple_repeat 1 72 0 31 0 0 0 chr6 1600113 1600144 -187679410 + GC_rich Low_complexity Low_complexity 1 31 0 34 24 0 0 chr6 1600614 1600655 -187678899 + GC_rich Low_complexity Low_complexity 1 41 0 32 26 0 0 chr6 1600904 1600943 -187678611 + GC_rich Low_complexity Low_complexity 1 39 0 221 120 20 20 chr6 1601158 1601208 -187678346 + (CGG)n Simple_repeat Simple_repeat 2 51 0 25 0 0 0 chr6 1601274 1601299 -187678255 + GC_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr6 1601373 1601397 -187678157 + (CGG)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr6 1601497 1601517 -187678037 + (CGG)n Simple_repeat Simple_repeat 3 22 0 23 0 0 0 chr6 1604126 1604149 -187675405 + GC_rich Low_complexity Low_complexity 1 23 0 220 220 20 0 chr6 1608284 1608334 -187671220 + GA-rich Low_complexity Low_complexity 5 55 0 254 327 13 0 chr6 1611990 1612146 -187667408 + (TG)n Simple_repeat Simple_repeat 1 158 0 261 312 13 0 chr6 1612785 1612862 -187666692 + L2 LINE L2 3236 3313 0 243 0 0 0 chr6 1614418 1614445 -187665109 + (T)n Simple_repeat Simple_repeat 1 27 0 257 232 50 99 chr6 1614791 1614972 -187664582 + MER112 DNA MER1_type 29 200 -60 255 229 0 0 chr6 1615274 1615335 -187664219 + GA-rich Low_complexity Low_complexity 4 64 0 206 152 0 22 chr6 1621225 1621271 -187658283 + CT-rich Low_complexity Low_complexity 2 46 0 811 253 69 30 chr6 1621870 1622174 -187657380 + L1ME2 LINE L1 5839 6154 -10 1861 171 3 10 chr6 1622185 1622483 -187657071 + AluJo SINE Alu 1 296 -16 189 282 175 10 chr6 1622556 1622659 -187656895 + MIR SINE MIR 100 219 -43 292 370 146 0 chr6 1622974 1623336 -187656218 - L2 LINE L2 -48 3265 2851 471 341 41 25 chr6 1624240 1624554 -187655000 - L2 LINE L2 -562 2752 2434 231 333 81 16 chr6 1627436 1627559 -187651995 - MIR SINE MIR -128 134 4 257 333 74 22 chr6 1628932 1629067 -187650487 - L2 LINE L2 -219 3053 2912 218 227 109 126 chr6 1629163 1629195 -187650359 + MIR SINE MIR 22 53 -209 1666 151 37 0 chr6 1629195 1629491 -187650063 + AluJb SINE Alu 1 306 0 218 227 109 126 chr6 1629491 1629576 -187649978 + MIR SINE MIR 53 138 -124 208 252 193 37 chr6 1630269 1630404 -187649150 - L2 LINE L2 -54 3259 3104 310 115 33 0 chr6 1631294 1631355 -187648199 + CT-rich Low_complexity Low_complexity 2 64 0 2216 104 0 25 chr6 1631741 1632058 -187647496 - AluSx SINE Alu -3 309 1 274 237 86 21 chr6 1633094 1633187 -187646367 + L1MA8 LINE L1 5961 6059 -232 * 943 236 46 4 chr6 1633182 1633419 -187646135 + L1MB8 LINE L1 5932 6178 0 314 227 75 37 chr6 1634411 1634520 -187645034 - MIR SINE MIR -55 153 45 2316 79 0 13 chr6 1634520 1634823 -187644731 - AluSg SINE Alu -11 299 1 314 227 75 37 chr6 1634823 1634836 -187644718 - MIR SINE MIR -163 45 34 257 277 15 0 chr6 1635551 1635616 -187643938 + L2 LINE L2 3241 3306 -7 1388 167 151 12 chr6 1636022 1636273 -187643281 - AluJo SINE Alu -16 286 1 2377 76 0 3 chr6 1689852 1690141 -187589413 - AluY SINE Alu -23 288 1 948 164 12 6 chr6 1692931 1693096 -187586458 + MLT1D LTR MaLR 340 505 0 25 31 0 0 chr6 1693474 1693506 -187586048 + AT_rich Low_complexity Low_complexity 1 32 0 230 54 0 27 chr6 1694585 1694622 -187584932 + (TA)n Simple_repeat Simple_repeat 2 37 0 2230 98 0 7 chr6 1697886 1698067 -187581487 - AluY SINE Alu -8 303 123 180 0 0 0 chr6 1698067 1698087 -187581467 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2230 98 0 7 chr6 1698087 1698210 -187581344 - AluY SINE Alu -188 123 1 413 291 0 10 chr6 1698232 1698335 -187581219 + L2 LINE L2 3156 3257 -15 771 243 37 28 chr6 1698340 1698554 -187581000 - MIR SINE MIR -9 253 38 2126 58 0 12 chr6 1699153 1699410 -187580144 - AluY SINE Alu -15 296 43 2285 84 7 7 chr6 1701259 1701555 -187577999 - AluSp SINE Alu -17 296 1 217 359 0 16 chr6 1701572 1701636 -187577918 - L2 LINE L2 -92 3180 3118 212 119 34 68 chr6 1702666 1702725 -187576829 + (TTAA)n Simple_repeat Simple_repeat 1 57 0 24 0 0 0 chr6 1704045 1704069 -187575485 + AT_rich Low_complexity Low_complexity 1 24 0 498 279 0 0 chr6 1704562 1704673 -187574881 - MER58C DNA MER1_type -2 213 103 201 245 0 20 chr6 1704673 1704722 -187574832 + CT-rich Low_complexity Low_complexity 3 50 0 199 47 0 70 chr6 1704770 1704813 -187574741 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 931 209 138 12 chr6 1706030 1706283 -187573271 + HAL1 LINE L1 3 287 -2220 2904 264 129 52 chr6 1706365 1707869 -187571685 + HAL1 LINE L1 473 2133 -374 2401 81 0 3 chr6 1707869 1708177 -187571377 + AluSc SINE Alu 1 307 -2 2904 264 129 52 chr6 1708177 1708426 -187571128 + HAL1 LINE L1 2133 2361 -146 1593 139 9 118 chr6 1709358 1709689 -187569865 + AluSx SINE Alu 1 295 -17 487 329 50 25 chr6 1711082 1711365 -187568189 - L2 LINE L2 -13 3259 2970 219 245 19 0 chr6 1712140 1712193 -187567361 + GA-rich Low_complexity Low_complexity 1 54 0 937 106 17 11 chr6 1713311 1713665 -187565889 + (CA)n Simple_repeat Simple_repeat 1 356 0 966 109 14 16 chr6 1713683 1714041 -187565513 + (CA)n Simple_repeat Simple_repeat 1 357 0 339 244 11 0 chr6 1715046 1715136 -187564418 + MIR SINE MIR 53 143 -119 2457 84 0 0 chr6 1716098 1716395 -187563159 + AluSx SINE Alu 1 297 -15 421 158 49 0 chr6 1716759 1716841 -187562713 - Charlie5 DNA MER1_type -1366 1246 1161 2142 162 21 9 chr6 1716872 1717297 -187562257 - L1MA6 LINE L1 -6 6294 5865 2521 90 0 3 chr6 1717352 1717664 -187561890 + AluSx SINE Alu 1 311 -1 206 170 0 57 chr6 1717689 1717742 -187561812 + A-rich Low_complexity Low_complexity 1 50 0 2323 101 0 0 chr6 1717747 1718043 -187561511 - AluSg SINE Alu -14 296 1 258 367 35 6 chr6 1718548 1718717 -187560837 - MER5A DNA MER1_type 0 189 16 2339 38 42 7 chr6 1719095 1719384 -187560170 + AluY SINE Alu 1 299 -12 25 0 0 0 chr6 1719953 1719978 -187559576 + AT_rich Low_complexity Low_complexity 1 25 0 183 162 0 0 chr6 1720790 1720827 -187558727 + (CA)n Simple_repeat Simple_repeat 2 38 0 2346 85 0 0 chr6 1722513 1722823 -187556731 - AluSg SINE Alu 0 310 1 207 220 0 0 chr6 1723283 1723333 -187556221 + (CA)n Simple_repeat Simple_repeat 2 51 0 233 278 88 49 chr6 1724021 1724305 -187555249 - HAL1b LINE L1 -1036 312 18 692 176 101 14 chr6 1724408 1724556 -187554998 - MER58B DNA MER1_type 0 341 181 1976 134 13 22 chr6 1725129 1725442 -187554112 + AluSx SINE Alu 1 310 -2 1295 213 14 14 chr6 1725657 1725944 -187553610 - AluJo SINE Alu -15 297 11 29706 95 30 14 chr6 1726115 1727307 -187552247 + L1P3 LINE L1 11 1182 -5287 196 100 0 0 chr6 1727307 1727337 -187552217 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2184 115 0 0 chr6 1727337 1727615 -187551939 - AluSc SINE Alu -31 278 1 29706 95 30 14 chr6 1727615 1731995 -187547559 + L1P3 LINE L1 1181 5712 -757 591 249 173 76 chr6 1732022 1732089 -187547465 - MLT1H LTR MaLR 0 555 496 2290 95 0 26 chr6 1732089 1732395 -187547159 - AluSq SINE Alu -15 298 1 591 249 173 76 chr6 1732395 1732868 -187546686 - MLT1H LTR MaLR -59 496 1 1100 231 77 3 chr6 1733606 1733905 -187545649 - MER33 DNA MER1_type 0 324 4 241 171 0 0 chr6 1734334 1734375 -187545179 - MER5A DNA MER1_type -5 184 144 374 252 101 25 chr6 1734378 1734537 -187545017 - MER5A DNA MER1_type -18 171 1 195 277 77 0 chr6 1734542 1734607 -187544947 + MIR SINE MIR 23 92 -116 680 80 0 0 chr6 1734615 1734703 -187544851 + AluS SINE Alu 4 91 -221 1265 102 0 0 chr6 1734752 1734918 -187544636 - AluSg/x SINE Alu -18 294 129 451 314 6 13 chr6 1735083 1735239 -187544315 - MIR3 SINE MIR -12 196 42 255 192 20 91 chr6 1735391 1735490 -187544064 - L2 LINE L2 -12 3260 3169 236 252 158 31 chr6 1741396 1741523 -187538031 - MIR3 SINE MIR -63 145 3 1216 139 130 0 chr6 1744392 1744600 -187534954 + MER46A DNA MER2_type 1 235 -1 2025 115 3 73 chr6 1745519 1745849 -187533705 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 1746857 1746879 -187532675 + AT_rich Low_complexity Low_complexity 1 22 0 267 267 141 22 chr6 1747150 1747354 -187532200 + MIR SINE MIR 24 257 -5 226 261 159 11 chr6 1751159 1751247 -187528307 - MER91B DNA MER1_type 0 190 90 285 263 79 0 chr6 1751263 1751339 -187528215 - MER91B DNA MER1_type -61 129 48 1669 163 46 18 chr6 1752229 1752511 -187527043 + AluJo SINE Alu 1 290 -22 313 267 140 13 chr6 1756066 1756216 -187523338 + MIR SINE MIR 82 250 -12 250 337 51 10 chr6 1758573 1758671 -187520883 - MIR SINE MIR -13 249 148 1784 160 7 11 chr6 1758695 1758976 -187520578 + AluJb SINE Alu 1 280 -32 189 107 0 0 chr6 1758979 1759007 -187520547 + (GGAGA)n Simple_repeat Simple_repeat 2 29 0 1793 88 4 0 chr6 1760015 1760243 -187519311 + AluSg/x SINE Alu 81 309 -1 371 247 315 0 chr6 1761170 1761332 -187518222 - MLT1G LTR MaLR -24 566 354 22 0 0 0 chr6 1764604 1764626 -187514928 + AT_rich Low_complexity Low_complexity 1 22 0 967 253 110 67 chr6 1764683 1765304 -187514250 - MER21B LTR ERV1 -154 709 57 1978 151 6 13 chr6 1765349 1765661 -187513893 - AluJb SINE Alu -2 310 1 357 302 0 26 chr6 1766169 1766285 -187513269 - MIR SINE MIR -81 181 69 1958 183 103 19 chr6 1766646 1767056 -187512498 + MLT1D LTR MaLR 1 456 -49 1577 183 35 42 chr6 1767056 1767433 -187512121 - MLT1A2 LTR MaLR 0 374 1 1958 183 103 19 chr6 1767433 1767486 -187512068 + MLT1D LTR MaLR 456 503 -2 1661 269 121 55 chr6 1767646 1768849 -187510705 - HAL1 LINE L1 0 2507 1226 201 213 0 0 chr6 1768911 1768958 -187510596 + L2 LINE L2 2154 2200 -1114 1755 142 0 47 chr6 1770732 1771028 -187508526 + AluJb SINE Alu 6 287 -25 235 184 0 20 chr6 1771256 1771305 -187508249 + (TA)n Simple_repeat Simple_repeat 2 49 0 311 281 22 30 chr6 1772226 1772361 -187507193 + MER5A DNA MER1_type 51 184 -5 1869 161 7 0 chr6 1772829 1773121 -187506433 + MER1B DNA MER1_type 1 294 -45 611 261 22 17 chr6 1773391 1773571 -187505983 - MIR SINE MIR -38 224 44 423 0 0 0 chr6 1774061 1774108 -187505446 + (CA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr6 1775790 1775812 -187503742 + AT_rich Low_complexity Low_complexity 1 22 0 244 320 8 23 chr6 1776077 1776205 -187503349 + MIR SINE MIR 48 173 -89 1770 115 3 89 chr6 1776257 1776561 -187502993 - AluSx SINE Alu -9 303 26 225 0 0 0 chr6 1779397 1779422 -187500132 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr6 1781022 1781045 -187498509 + AT_rich Low_complexity Low_complexity 1 23 0 518 281 14 0 chr6 1781267 1781406 -187498148 + Charlie1 DNA MER1_type 1 141 -2620 983 174 134 13 chr6 1781409 1781708 -187497846 + Charlie1 DNA MER1_type 2427 2761 0 750 185 0 0 chr6 1781822 1781952 -187497602 + FLAM_A SINE Alu 2 131 -2 357 109 0 0 chr6 1782263 1782318 -187497236 + (CA)n Simple_repeat Simple_repeat 2 56 0 1731 168 4 0 chr6 1782874 1783142 -187496412 - AluJo SINE Alu -20 292 24 305 261 43 0 chr6 1783307 1783376 -187496178 + L2 LINE L2 3146 3217 -55 1080 238 45 26 chr6 1783431 1783851 -187495703 + L1M4 LINE L1 4852 5279 -867 26 0 0 0 chr6 1784489 1784515 -187495039 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr6 1784728 1784751 -187494803 + (TG)n Simple_repeat Simple_repeat 2 24 0 197 274 66 47 chr6 1785869 1785975 -187493579 - L2 LINE L2 -23 3290 3183 2108 120 38 0 chr6 1786114 1786406 -187493148 - AluSx SINE Alu -9 303 1 260 280 175 66 chr6 1787751 1788162 -187491392 - L2 LINE L2 -4 3309 2854 293 322 9 26 chr6 1788293 1788408 -187491146 + GA-rich Low_complexity Low_complexity 3 115 0 1520 172 32 36 chr6 1788764 1789072 -187490482 + AluJo SINE Alu 1 307 -5 21 57 0 0 chr6 1789074 1789109 -187490445 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 1790505 1790533 -187489021 + AT_rich Low_complexity Low_complexity 1 28 0 189 304 18 0 chr6 1792007 1792063 -187487491 - L2 LINE L2 -4 3309 3253 227 79 26 0 chr6 1792932 1792970 -187486584 + (CA)n Simple_repeat Simple_repeat 2 40 0 2451 89 0 0 chr6 1794149 1794451 -187485103 + AluSq SINE Alu 1 302 -11 311 192 14 0 chr6 1794512 1794585 -187484969 + (TA)n Simple_repeat Simple_repeat 1 74 0 194 347 56 0 chr6 1794640 1794712 -187484842 + MIR SINE MIR 47 122 -140 234 136 0 0 chr6 1794858 1794902 -187484652 + (CA)n Simple_repeat Simple_repeat 1 44 0 2240 107 3 3 chr6 1795301 1795600 -187483954 + AluSq SINE Alu 1 299 -14 198 0 0 0 chr6 1795600 1795622 -187483932 + (TA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr6 1795980 1796001 -187483553 + AT_rich Low_complexity Low_complexity 1 21 0 249 57 0 0 chr6 1797427 1797462 -187482092 + (T)n Simple_repeat Simple_repeat 1 35 0 355 303 128 38 chr6 1800411 1800636 -187478918 + MIR SINE MIR 15 262 0 284 325 41 16 chr6 1800704 1800827 -187478727 + L2 LINE L2 3174 3299 -14 2853 173 52 12 chr6 1801282 1801550 -187478004 - MER7C DNA MER2_type -2426 602 346 1936 145 0 22 chr6 1801550 1801861 -187477693 + AluSx SINE Alu 1 304 -8 2853 173 52 12 chr6 1801861 1802170 -187477384 - MER7C DNA MER2_type -2682 346 2 1407 201 24 21 chr6 1802608 1802896 -187476658 + AluJo SINE Alu 1 289 -23 420 20 0 0 chr6 1802902 1802951 -187476603 + (TG)n Simple_repeat Simple_repeat 2 50 0 197 231 0 15 chr6 1802958 1803023 -187476531 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 4454 196 61 16 chr6 1803474 1804629 -187474925 + L1M4c LINE L1 546 1752 -4632 2218 148 45 28 chr6 1804645 1805071 -187474483 - Tigger2a DNA MER2_type -1 433 1 212 353 8 0 chr6 1805071 1805204 -187474350 + (TA)n Simple_repeat Simple_repeat 1 134 0 1530 197 3 19 chr6 1805252 1805562 -187473992 - AluJb SINE Alu -7 305 1 968 181 10 0 chr6 1805861 1806054 -187473500 - MER3 DNA MER1_type -3 206 12 745 171 101 0 chr6 1806073 1806231 -187473323 - MER20 DNA MER1_type 0 219 46 22 0 0 0 chr6 1807816 1807838 -187471716 + AT_rich Low_complexity Low_complexity 1 22 0 452 131 0 0 chr6 1807905 1807966 -187471588 + AluJo SINE Alu 10 70 -242 227 69 0 0 chr6 1807968 1807997 -187471557 - Alu SINE Alu -28 105 77 1349 144 5 14 chr6 1808003 1808211 -187471343 + AluJo SINE Alu 72 277 -35 207 0 0 0 chr6 1808950 1808973 -187470581 + (T)n Simple_repeat Simple_repeat 1 23 0 200 268 0 0 chr6 1809333 1809374 -187470180 + polypyrimidine Low_complexity Low_complexity 5 45 0 22 56 0 0 chr6 1809847 1809883 -187469671 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr6 1810838 1810869 -187468685 + AT_rich Low_complexity Low_complexity 1 31 0 183 328 31 47 chr6 1810931 1811059 -187468495 - L2 LINE L2 -197 3116 2991 1902 88 74 14 chr6 1811662 1811990 -187467564 - AluY SINE Alu 0 311 1 233 200 50 17 chr6 1816144 1816204 -187463350 + L2 LINE L2 3249 3310 -3 320 332 119 20 chr6 1817844 1818046 -187461508 + L2 LINE L2 2827 3048 -224 384 238 109 32 chr6 1818363 1818551 -187461003 + MLT1L LTR MaLR 299 606 -9 1561 165 33 15 chr6 1818656 1818929 -187460625 + AluJb SINE Alu 1 278 -34 378 0 0 0 chr6 1818933 1818975 -187460579 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 1937 161 0 3 chr6 1819309 1819607 -187459947 + AluSx SINE Alu 1 297 -15 318 345 45 8 chr6 1819875 1820075 -187459479 - MIR SINE MIR -3 259 3 214 225 0 0 chr6 1821055 1821095 -187458459 - MIR SINE MIR -102 106 67 2187 126 21 12 chr6 1821412 1821746 -187457808 - MER1B DNA MER1_type 0 337 1 2100 149 0 9 chr6 1821901 1822216 -187457338 - AluJb SINE Alu 0 312 1 1644 161 30 0 chr6 1822905 1823172 -187456382 - AluJo SINE Alu -37 275 1 241 238 48 0 chr6 1823819 1823882 -187455672 - L2 LINE L2 -253 3060 2995 188 239 195 58 chr6 1824005 1824231 -187455323 + L2 LINE L2 2804 3060 -212 217 330 31 31 chr6 1824429 1824653 -187454901 - L2 LINE L2 -935 2379 2156 1045 169 13 58 chr6 1824705 1824930 -187454624 - MER20 DNA MER1_type -4 215 1 31 26 0 0 chr6 1827528 1827566 -187451988 + AT_rich Low_complexity Low_complexity 1 38 0 2022 101 24 0 chr6 1828535 1828822 -187450732 - AluSp SINE Alu -16 297 4 2751 16 0 0 chr6 1829060 1829364 -187450190 + AluY SINE Alu 1 304 -7 513 239 54 8 chr6 1830293 1830423 -187449131 + MER20 DNA MER1_type 2 137 -82 192 263 211 0 chr6 1835492 1835644 -187443910 + MIR3 SINE MIR 25 208 0 1211 231 35 19 chr6 1836083 1836455 -187443099 + L1ME1 LINE L1 5782 6159 -7 195 42 0 0 chr6 1837442 1837466 -187442088 + (A)n Simple_repeat Simple_repeat 1 24 0 27 49 0 0 chr6 1838098 1838139 -187441415 + AT_rich Low_complexity Low_complexity 1 41 0 198 103 0 0 chr6 1839304 1839333 -187440221 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr6 1839704 1839735 -187439819 + AT_rich Low_complexity Low_complexity 1 31 0 205 156 0 0 chr6 1841445 1841477 -187438077 + GA-rich Low_complexity Low_complexity 3 34 0 2256 92 17 0 chr6 1843813 1844108 -187435446 - AluSg SINE Alu -10 300 1 21 57 0 0 chr6 1844683 1844718 -187434836 + AT_rich Low_complexity Low_complexity 1 35 0 189 275 63 106 chr6 1845044 1845186 -187434368 - L2 LINE L2 -1828 1486 1351 261 0 0 0 chr6 1846882 1846911 -187432643 + (CA)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr6 1847216 1847238 -187432316 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chr6 1851141 1851175 -187428379 + (CA)n Simple_repeat Simple_repeat 2 35 0 2018 123 36 0 chr6 1851567 1851869 -187427685 + AluSp SINE Alu 1 313 0 1338 88 0 0 chr6 1851924 1852094 -187427460 + AluSq SINE Alu 126 295 -18 188 263 88 44 chr6 1852388 1852502 -187427052 + MIR SINE MIR 90 208 -54 2008 155 7 7 chr6 1853181 1853491 -187426063 + AluJo SINE Alu 1 310 -2 2535 59 0 7 chr6 1853856 1854162 -187425392 + AluY SINE Alu 2 305 -6 256 333 65 54 chr6 1854745 1854913 -187424641 + L2 LINE L2 3101 3270 -2 25 65 0 0 chr6 1855005 1855051 -187424503 + AT_rich Low_complexity Low_complexity 1 46 0 1476 211 6 35 chr6 1855989 1856302 -187423252 + AluJo SINE Alu 1 304 -8 2071 115 35 0 chr6 1858944 1859231 -187420323 + AluSc SINE Alu 1 297 -12 22 35 0 0 chr6 1859605 1859634 -187419920 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 1859813 1859841 -187419713 + AT_rich Low_complexity Low_complexity 1 28 0 21 100 0 0 chr6 1862424 1862494 -187417060 + AT_rich Low_complexity Low_complexity 1 70 0 473 223 218 40 chr6 1862763 1862965 -187416589 - MIR SINE MIR -12 250 13 256 306 137 8 chr6 1863002 1863126 -187416428 - MIR SINE MIR -76 186 47 1085 199 15 0 chr6 1863551 1863752 -187415802 + MER2 DNA MER2_type 1 204 -141 1093 158 19 98 chr6 1863752 1864041 -187415513 - AluJo SINE Alu 0 312 54 1969 123 44 27 chr6 1864043 1864410 -187415144 - THE1C LTR MaLR -2 373 1 2442 113 5 15 chr6 1864410 1864799 -187414755 - THE1C-int LTR MaLR 0 1580 1196 284 203 2 48 chr6 1864799 1864872 -187414682 - AluJ/FLAM SINE Alu -244 58 1 21 36 0 0 chr6 1864874 1864902 -187414652 + AT_rich Low_complexity Low_complexity 1 28 0 3247 188 65 28 chr6 1865494 1866510 -187413044 - L1MB7 LINE L1 -78 6106 5044 234 176 0 0 chr6 1866728 1866779 -187412775 - L1MB7 LINE L1 -1118 5028 4978 263 232 14 14 chr6 1866782 1866851 -187412703 - L1MB7 LINE L1 -1250 4896 4828 864 203 16 5 chr6 1867468 1867655 -187411899 + MER5A DNA MER1_type 1 189 0 2083 141 7 0 chr6 1868190 1868481 -187411073 - AluSx SINE Alu -19 293 1 2305 86 26 0 chr6 1869005 1869309 -187410245 - AluSx SINE Alu 0 312 1 21 57 0 0 chr6 1870265 1870300 -187409254 + AT_rich Low_complexity Low_complexity 1 35 0 707 256 20 0 chr6 1871246 1871445 -187408109 - MER3 DNA MER1_type -1 208 6 211 337 71 10 chr6 1871752 1871850 -187407704 - L2 LINE L2 -32 3240 3137 654 207 165 0 chr6 1871954 1872142 -187407412 - MER20 DNA MER1_type 0 219 1 184 279 93 31 chr6 1872743 1872872 -187406682 - L2 LINE L2 -798 2516 2380 1367 150 26 51 chr6 1872948 1873261 -187406293 - MLT1B LTR MaLR -85 305 1 189 243 229 0 chr6 1873301 1873371 -187406183 + MIR SINE MIR 16 101 -161 944 179 16 0 chr6 1873445 1873635 -187405919 - L1MA4 LINE L1 -101 6199 6007 238 309 0 28 chr6 1873827 1874005 -187405549 + (CCCTA)n Simple_repeat Simple_repeat 2 174 0 236 300 100 0 chr6 1874147 1874217 -187405337 - MIR3 SINE MIR -14 194 118 366 349 50 15 chr6 1874616 1874814 -187404740 - L2 LINE L2 -4 3309 3105 230 241 0 17 chr6 1874911 1874969 -187404585 + CT-rich Low_complexity Low_complexity 1 57 0 308 241 13 0 chr6 1876355 1876434 -187403120 - L1ME3A LINE L1 -4 6166 6087 213 312 128 9 chr6 1876558 1876667 -187402887 + MIR3 SINE MIR 78 199 -9 246 306 97 45 chr6 1877562 1877696 -187401858 - L2 LINE L2 -1 3312 3172 209 280 50 30 chr6 1880864 1880964 -187398590 + MIR SINE MIR 20 121 -141 3038 184 38 6 chr6 1883655 1884188 -187395366 - MER44D DNA MER2_type 0 605 1 238 317 29 39 chr6 1884634 1884738 -187394816 + MIR3 SINE MIR 9 111 -97 871 174 76 76 chr6 1885779 1886054 -187393500 + MER33 DNA MER1_type 49 323 -1 218 329 14 0 chr6 1886368 1886441 -187393113 - MIR3 SINE MIR -54 154 81 2134 121 0 0 chr6 1887907 1888196 -187391358 + AluSx SINE Alu 1 289 -23 2825 16 0 0 chr6 1888923 1889233 -187390321 + AluYa5 SINE Alu 1 310 -1 267 54 0 0 chr6 1889944 1889981 -187389573 + (T)n Simple_repeat Simple_repeat 1 37 0 2249 99 0 34 chr6 1889998 1890320 -187389234 + AluY SINE Alu 1 311 0 192 257 176 0 chr6 1891731 1891805 -187387749 + L3 LINE CR1 1345 1431 -146 309 232 26 13 chr6 1892250 1892405 -187387149 + GA-rich Low_complexity Low_complexity 1 157 0 1737 183 6 10 chr6 1894288 1894600 -187384954 + AluJb SINE Alu 1 311 -1 313 264 104 48 chr6 1894914 1895039 -187384515 - L2 LINE L2 -8 3264 3133 2506 157 179 118 chr6 1898243 1898672 -187380882 + LTR28 LTR ERV1 1 403 -617 2247 118 53 34 chr6 1898672 1899029 -187380525 + THE1B LTR MaLR 1 364 0 2506 157 179 118 chr6 1899029 1899561 -187379993 + LTR28 LTR ERV1 403 1020 0 219 279 118 37 chr6 1899659 1899795 -187379759 + MIR3 SINE MIR 1 147 -61 186 258 106 15 chr6 1900444 1900510 -187379044 + L2 LINE L2 3237 3308 -5 507 93 40 0 chr6 1900716 1900791 -187378763 + AluY SINE Alu 216 293 -18 4504 127 49 39 chr6 1901528 1902305 -187377249 + LTR1 LTR ERV1 1 785 0 23 0 0 0 chr6 1903377 1903400 -187376154 + AT_rich Low_complexity Low_complexity 1 23 0 2255 114 0 0 chr6 1903908 1904207 -187375347 + AluSc SINE Alu 1 299 -10 2082 123 0 0 chr6 1904510 1904830 -187374724 + AluSx SINE Alu 1 320 0 251 313 71 0 chr6 1907672 1907771 -187371783 - L2 LINE L2 0 3313 3208 460 268 65 0 chr6 1908086 1908209 -187371345 - MIR SINE MIR -40 222 92 2537 57 0 3 chr6 1908358 1908658 -187370896 - AluY SINE Alu -9 302 4 4396 205 22 16 chr6 1908687 1910489 -187369065 - L1MB7 LINE L1 -10 6174 4362 266 286 13 13 chr6 1910990 1911067 -187368487 + MIR SINE MIR 62 138 -70 219 241 232 9 chr6 1911161 1911273 -187368281 + MIR SINE MIR 126 262 0 322 250 88 29 chr6 1911623 1911759 -187367795 + L1MEd LINE L1 2 145 -5974 1129 147 121 152 chr6 1912434 1912508 -187367046 + Tigger3(Golem) DNA MER2_type 5 80 -2948 2279 120 0 0 chr6 1912508 1912809 -187366745 + AluSx SINE Alu 1 301 -11 1129 147 121 152 chr6 1912809 1913089 -187366465 + Tigger3(Golem) DNA MER2_type 80 3028 0 1153 216 113 72 chr6 1913241 1913685 -187365869 - MLT1C LTR MaLR 0 467 6 815 120 45 53 chr6 1913714 1913847 -187365707 + FLAM_C SINE Alu 1 132 -1 582 263 108 31 chr6 1914238 1914751 -187364803 - L1MEd LINE L1 -4739 1392 958 390 205 0 0 chr6 1914753 1914836 -187364718 + C-rich Low_complexity Low_complexity 4 86 0 479 305 94 15 chr6 1914879 1915210 -187364344 - L1MEd LINE L1 -5194 925 569 339 278 0 21 chr6 1915309 1915406 -187364148 - L1MC4 LINE L1 -1334 6708 6614 270 81 0 0 chr6 1915406 1915443 -187364111 + (CA)n Simple_repeat Simple_repeat 2 38 0 183 80 0 0 chr6 1915999 1916024 -187363530 + (CATG)n Simple_repeat Simple_repeat 2 26 0 807 214 107 5 chr6 1916649 1916845 -187362709 - MER20 DNA MER1_type 0 219 4 769 279 259 13 chr6 1917019 1917696 -187361858 - L2 LINE L2 -1020 2294 1452 345 279 39 90 chr6 1918450 1918683 -187360871 + MLT1K LTR MaLR 360 580 -8 349 330 35 9 chr6 1919206 1919321 -187360233 + L2 LINE L2 3181 3298 -15 2209 80 3 0 chr6 1920048 1920334 -187359220 + AluY SINE Alu 1 287 -24 1457 52 0 0 chr6 1920345 1920518 -187359036 + AluYa8 SINE Alu 133 305 -5 632 236 0 8 chr6 1921452 1921579 -187357975 + FLAM_A SINE Alu 1 126 -7 462 289 168 10 chr6 1922120 1922317 -187357237 + MIR SINE MIR 25 252 -10 542 289 54 0 chr6 1923857 1924023 -187355531 - MIR SINE MIR -45 217 43 870 151 11 81 chr6 1924313 1924499 -187355055 + AluJo SINE Alu 120 292 -20 294 260 60 30 chr6 1925069 1925169 -187354385 - MIR SINE MIR -91 171 69 798 202 19 84 chr6 1926706 1926919 -187352635 - MER20 DNA MER1_type -19 200 2 846 152 15 8 chr6 1927386 1927518 -187352036 - AluJb SINE Alu -178 134 2 249 278 55 35 chr6 1927875 1928005 -187351549 + MIR SINE MIR 54 187 -21 22 0 0 0 chr6 1929638 1929660 -187349894 + AT_rich Low_complexity Low_complexity 1 22 0 3428 155 37 12 chr6 1930014 1930606 -187348948 - Tigger1 DNA MER2_type -128 2290 1684 2177 161 45 15 chr6 1930602 1930999 -187348555 - Tigger1 DNA MER2_type -1980 438 30 * 405 178 89 141 chr6 1931014 1931149 -187348405 - MER7A DNA MER2_type -220 126 1 180 111 0 0 chr6 1931591 1931618 -187347936 + (A)n Simple_repeat Simple_repeat 1 27 0 753 236 144 5 chr6 1932019 1932214 -187347340 - MER58A DNA MER1_type -2 222 1 2149 95 35 3 chr6 1932641 1932926 -187346628 - AluSx SINE Alu -18 294 1 380 271 119 0 chr6 1933070 1933188 -187346366 - L2 LINE L2 0 3272 3141 1694 184 0 14 chr6 1933635 1933929 -187345625 - AluJo SINE Alu -22 290 1 23 33 0 0 chr6 1933929 1933959 -187345595 + AT_rich Low_complexity Low_complexity 1 30 0 1142 183 69 19 chr6 1934912 1935174 -187344380 + L1MA5A LINE L1 6002 6276 -21 195 299 10 72 chr6 1937098 1937195 -187342359 - MER5A DNA MER1_type -63 126 36 * 239 231 44 66 chr6 1937123 1937214 -187342340 + MER5A DNA MER1_type 96 184 -5 1990 169 58 64 chr6 1937882 1938688 -187340866 - L1MB7 LINE L1 -1 6183 5373 2411 110 0 0 chr6 1938688 1938998 -187340556 - AluSg SINE Alu 0 310 1 1091 147 24 18 chr6 1939005 1939175 -187340379 - FAM SINE Alu -4 171 1 1990 169 58 64 chr6 1939175 1939490 -187340064 - L1MB7 LINE L1 -817 5367 4868 182 266 78 16 chr6 1939743 1939807 -187339747 - MIR SINE MIR -83 125 58 208 233 67 100 chr6 1940180 1940270 -187339284 - MIR SINE MIR -3 259 173 4819 36 21 5 chr6 1940511 1941070 -187338484 - L1PA4 LINE L1 -6 6149 5582 1551 180 7 34 chr6 1941364 1941658 -187337896 + AluJo SINE Alu 1 286 -26 840 246 24 28 chr6 1941765 1941976 -187337578 + MER58A DNA MER1_type 13 222 -2 221 360 56 0 chr6 1942681 1942770 -187336784 + L2 LINE L2 2543 2636 -678 367 260 309 18 chr6 1942789 1943178 -187336376 + L2 LINE L2 2811 3312 -1 247 273 45 0 chr6 1944653 1944719 -187334835 + L2 LINE L2 3142 3210 -62 2600 64 0 3 chr6 1944803 1945114 -187334440 + AluY SINE Alu 1 310 -1 26 0 0 0 chr6 1945143 1945169 -187334385 + AT_rich Low_complexity Low_complexity 1 26 0 400 257 64 9 chr6 1945679 1945788 -187333766 + L2 LINE L2 3197 3311 -2 1339 123 30 5 chr6 1946589 1946792 -187332762 + L1PA10 LINE L1 5954 6161 -7 41 66 0 0 chr6 1947990 1948066 -187331488 + AT_rich Low_complexity Low_complexity 1 76 0 24 53 0 0 chr6 1948086 1948124 -187331430 + AT_rich Low_complexity Low_complexity 1 38 0 927 279 18 21 chr6 1948374 1948654 -187330900 + Charlie4 DNA MER1_type 18 296 -1665 683 225 58 17 chr6 1948653 1948826 -187330728 + Charlie4 DNA MER1_type 1782 1961 0 * 22 0 0 0 chr6 1949470 1949492 -187330062 + AT_rich Low_complexity Low_complexity 1 22 0 2303 97 0 23 chr6 1950572 1950881 -187328673 + AluSx SINE Alu 1 302 -10 451 174 87 0 chr6 1952177 1952269 -187327285 + L2 LINE L2 3173 3272 0 22702 185 35 19 chr6 1953304 1957847 -187321707 + L1PB4 LINE L1 18 5488 -2124 1754 105 0 4 chr6 1957847 1958076 -187321478 + AluSq SINE Alu 1 228 -85 22702 185 35 19 chr6 1958076 1959652 -187319902 + L1PB4 LINE L1 5488 7037 -575 682 242 47 38 chr6 1959782 1959993 -187319561 + AluJo SINE Alu 81 293 -19 1637 220 24 3 chr6 1959998 1960330 -187319224 + L1PB4 LINE L1 7250 7588 -6 226 296 148 28 chr6 1960763 1960905 -187318649 + L1MCa LINE L1 232 390 -6036 350 243 72 27 chr6 1961063 1961174 -187318380 + L2 LINE L2 3197 3312 -1 915 181 40 6 chr6 1961979 1962156 -187317398 + L1PA11 LINE L1 5956 6138 -36 464 307 63 70 chr6 1962395 1962868 -187316686 + L2 LINE L2 2844 3313 0 25 31 0 0 chr6 1963459 1963491 -187316063 + AT_rich Low_complexity Low_complexity 1 32 0 303 260 78 89 chr6 1964126 1964320 -187315234 - L1MEc LINE L1 -822 2079 1844 253 336 45 9 chr6 1965276 1965386 -187314168 + L2 LINE L2 3150 3263 -9 292 350 60 0 chr6 1966355 1966455 -187313099 - L2 LINE L2 -9 3263 3158 2591 121 6 6 chr6 1967527 1967891 -187311663 + L1PA11 LINE L1 5803 6166 -8 195 351 69 8 chr6 1968109 1968240 -187311314 + L2 LINE L2 2617 2755 -559 2457 71 0 3 chr6 1969268 1969565 -187309989 - AluY SINE Alu -13 298 3 1055 192 75 43 chr6 1969568 1969849 -187309705 - L1MB8 LINE L1 -72 6106 5817 997 175 0 29 chr6 1969887 1970058 -187309496 - FRAM SINE Alu -10 166 1 2684 182 34 12 chr6 1970058 1970721 -187308833 - L1MB8 LINE L1 -351 5827 5152 1443 227 60 5 chr6 1970759 1971143 -187308411 + L1M4 LINE L1 4611 5015 -1131 413 262 73 60 chr6 1971146 1971394 -187308160 - HAL1b LINE L1 -616 732 482 377 286 259 5 chr6 1971432 1971617 -187307937 - L2 LINE L2 0 3313 3082 376 215 74 74 chr6 1971626 1971789 -187307765 + HAL1b LINE L1 905 1067 -281 355 269 44 55 chr6 1972779 1972961 -187306593 + MLT1J LTR MaLR 253 432 -79 223 240 56 112 chr6 1973163 1973342 -187306212 + L2 LINE L2 2894 3062 -210 2172 130 0 0 chr6 1973578 1973895 -187305659 - AluSx SINE Alu 0 317 1 282 227 175 10 chr6 1974665 1974762 -187304792 + MER103 DNA DNA 37 149 -17 230 253 84 0 chr6 1975437 1975520 -187304034 - MLT1I LTR MaLR -315 94 5 219 69 0 0 chr6 1975802 1975831 -187303723 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 716 247 97 23 chr6 1978204 1978463 -187301091 - L2 LINE L2 -1 3312 3035 678 262 29 44 chr6 1978533 1978739 -187300815 - MIR SINE MIR -13 249 47 22 70 0 0 chr6 1979470 1979513 -187300041 + AT_rich Low_complexity Low_complexity 1 43 0 382 161 39 23 chr6 1981243 1981373 -187298181 + CT-rich Low_complexity Low_complexity 3 134 0 1225 304 83 15 chr6 1981619 1982090 -187297464 - MLT1J LTR MaLR -8 503 1 2311 93 0 3 chr6 1982417 1982717 -187296837 + AluSc SINE Alu 1 299 -10 254 182 55 0 chr6 1983574 1983629 -187295925 + GA-rich Low_complexity Low_complexity 4 61 0 318 313 57 62 chr6 1983629 1983717 -187295837 + HAL1b LINE L1 430 517 -831 1292 219 75 0 chr6 1983717 1984037 -187295517 - MER2 DNA MER2_type 0 344 1 318 313 57 62 chr6 1984037 1984175 -187295379 + HAL1b LINE L1 517 655 -693 2337 87 3 0 chr6 1984231 1984530 -187295024 + AluSg SINE Alu 1 300 -10 311 261 27 27 chr6 1984943 1985054 -187294500 - HAL1b LINE L1 -517 831 721 463 36 99 0 chr6 1985085 1985196 -187294358 + (TA)n Simple_repeat Simple_repeat 2 123 0 6246 148 65 25 chr6 1985688 1986871 -187292683 - Tigger3b DNA MER2_type 0 1231 1 420 247 9 57 chr6 1987394 1987579 -187291975 + MER34 LTR ERV1 1 201 -341 * 774 215 45 33 chr6 1987578 1987820 -187291734 + MER39 LTR ERV1 463 707 0 201 313 0 0 chr6 1987894 1987961 -187291593 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 520 202 47 0 chr6 1990303 1990432 -187289122 + Charlie5 DNA MER1_type 2450 2584 -28 5633 110 16 14 chr6 1990475 1991476 -187288078 + L1PA13 LINE L1 5160 6160 -3 25 0 0 0 chr6 1991865 1991890 -187287664 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr6 1992059 1992096 -187287458 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr6 1992520 1992549 -187287005 + AT_rich Low_complexity Low_complexity 1 29 0 1804 159 7 13 chr6 1992679 1992980 -187286574 + AluJo SINE Alu 1 299 -13 1416 223 84 12 chr6 1993209 1993783 -187285771 + L1M4 LINE L1 2613 3227 -2919 2132 133 0 0 chr6 1993948 1994256 -187285298 - AluSx SINE Alu -4 308 1 1111 183 68 8 chr6 1994258 1994493 -187285061 - Tigger2 DNA MER2_type 0 2718 2470 29 28 0 0 chr6 1994619 1994655 -187284899 + AT_rich Low_complexity Low_complexity 1 36 0 3790 193 33 18 chr6 1994965 1995757 -187283797 - L1MB8 LINE L1 -6 6172 5369 2304 231 26 44 chr6 1995737 1996134 -187283420 - L1MB8 LINE L1 -1780 4366 3986 * 1906 111 50 0 chr6 1996134 1996396 -187283158 - AluSx SINE Alu -37 275 1 2304 231 26 44 chr6 1996396 1996720 -187282834 - L1MB8 LINE L1 -2160 3986 3658 187 51 0 51 chr6 1996952 1996991 -187282563 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 21 36 0 0 chr6 1998212 1998240 -187281314 + AT_rich Low_complexity Low_complexity 1 28 0 292 311 50 42 chr6 2000399 2000637 -187278917 + L1MEc LINE L1 1093 1332 -4873 314 275 79 44 chr6 2000761 2000970 -187278584 + L1MEc LINE L1 1546 1761 -815 450 0 0 0 chr6 2002006 2002056 -187277498 + (TG)n Simple_repeat Simple_repeat 2 51 0 211 200 0 0 chr6 2002134 2002169 -187277385 + (CA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr6 2003564 2003588 -187275966 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr6 2004782 2004809 -187274745 + (T)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr6 2005638 2005665 -187273889 + AT_rich Low_complexity Low_complexity 1 27 0 263 243 171 0 chr6 2006807 2006877 -187272677 - Charlie8 DNA MER1_type -992 1425 1344 332 193 263 18 chr6 2006881 2006995 -187272559 - MER5A DNA MER1_type 0 189 48 832 264 63 70 chr6 2007106 2007579 -187271975 - L2 LINE L2 0 3313 2844 398 277 43 28 chr6 2008339 2008480 -187271074 - L2 LINE L2 0 3313 3171 422 320 19 13 chr6 2009522 2009678 -187269876 - MER5A DNA MER1_type -1 188 32 228 252 56 9 chr6 2009785 2009892 -187269662 + Charlie7 DNA MER1_type 2435 2546 -66 479 239 62 0 chr6 2009959 2010089 -187269465 - MER58C DNA MER1_type 0 215 78 600 146 21 0 chr6 2010099 2010195 -187269359 + L1MB7 LINE L1 5894 5991 -193 296 314 176 29 chr6 2011828 2012140 -187267414 + L2 LINE L2 1963 2320 -994 1464 202 7 20 chr6 2012184 2012486 -187267068 + AluJo SINE Alu 1 298 -14 206 245 0 0 chr6 2013570 2013623 -187265931 + T-rich Low_complexity Low_complexity 1 53 0 283 128 0 0 chr6 2013626 2013673 -187265881 - L1PA16 LINE L1 0 6166 6120 255 314 67 0 chr6 2015029 2015134 -187264420 - MIR SINE MIR -30 232 121 186 351 13 26 chr6 2015333 2015410 -187264144 + MER5A DNA MER1_type 45 120 -69 1331 265 122 40 chr6 2015904 2016087 -187263467 + L1MDa LINE L1 1475 1641 -5080 2347 103 0 0 chr6 2016087 2016397 -187263157 + AluSg SINE Alu 1 310 0 1331 265 122 40 chr6 2016397 2017152 -187262402 + L1MDa LINE L1 1641 2536 -4185 * 4855 141 26 22 chr6 2017136 2017672 -187261882 + L1PB4 LINE L1 5291 5833 -323 1318 206 29 32 chr6 2017672 2017983 -187261571 + AluJo SINE Alu 1 310 -2 4855 141 26 22 chr6 2017983 2018307 -187261247 + L1PB4 LINE L1 5833 6154 -2 409 257 104 15 chr6 2018322 2018524 -187261030 + L1MDa LINE L1 2509 2728 -3812 * 3240 238 151 69 chr6 2018519 2019966 -187259588 + L1MCa LINE L1 26 1352 -5074 318 50 0 0 chr6 2019966 2020006 -187259548 + (TA)n Simple_repeat Simple_repeat 2 41 0 3240 238 151 69 chr6 2020006 2021677 -187257877 + L1MCa LINE L1 1352 3409 -3017 1378 180 117 25 chr6 2021678 2021995 -187257559 - MER44D DNA MER2_type -1 604 387 1607 161 16 82 chr6 2021995 2022312 -187257242 + AluJb SINE Alu 1 296 -16 392 303 0 0 chr6 2022370 2022515 -187257039 + L1MDa LINE L1 2757 2901 -3639 1458 184 4 11 chr6 2022616 2022887 -187256667 - AluJb SINE Alu -23 289 21 2163 115 0 7 chr6 2023630 2023935 -187255619 - AluSq SINE Alu -10 303 1 23 68 0 0 chr6 2023955 2023999 -187255555 + AT_rich Low_complexity Low_complexity 1 44 0 787 252 96 32 chr6 2024521 2025021 -187254533 - L1M4 LINE L1 -1331 4815 4284 1159 175 154 34 chr6 2025025 2025350 -187254204 + MLT1A2 LTR MaLR 7 370 -4 289 265 82 20 chr6 2025355 2025551 -187254003 - L1M4 LINE L1 -1862 4284 4077 1144 195 8 51 chr6 2025615 2025872 -187253682 + MLT1D LTR MaLR 2 247 -258 8396 69 3 2 chr6 2025873 2027018 -187252536 + L1P LINE L1 2837 3982 -2164 1837 79 12 8 chr6 2027018 2027269 -187252285 + L1PA6 LINE L1 5902 6154 0 876 190 109 19 chr6 2027280 2027491 -187252063 + MLT1D LTR MaLR 269 498 -7 745 287 54 9 chr6 2027529 2027846 -187251708 - L1M4 LINE L1 -2229 3917 3587 552 229 70 78 chr6 2027922 2027983 -187251571 - L1M4 LINE L1 -3525 2621 2561 2466 81 0 0 chr6 2027983 2028290 -187251264 + AluSg SINE Alu 1 307 -3 552 229 70 78 chr6 2028290 2028512 -187251042 - L1M4 LINE L1 -3585 2561 2340 186 408 26 26 chr6 2028513 2028665 -187250889 - L2 LINE L2 -225 3047 2896 238 303 56 42 chr6 2028722 2028864 -187250690 + MLT1L LTR MaLR 44 187 -428 342 330 135 14 chr6 2028932 2029147 -187250407 + MLT1L LTR MaLR 353 593 -22 1196 215 111 82 chr6 2030423 2030944 -187248610 + L1ME LINE L1 929 1464 -5483 181 0 33 33 chr6 2030945 2030975 -187248579 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 811 230 86 63 chr6 2030979 2031571 -187247983 + L1ME LINE L1 1413 2141 -4816 195 247 193 30 chr6 2031884 2032053 -187247501 + MIR SINE MIR 2 246 -16 369 263 10 0 chr6 2032164 2032263 -187247291 - MER104 DNA Tc2 -12 168 69 641 263 43 16 chr6 2032331 2032517 -187247037 - MIR SINE MIR -59 203 13 432 343 6 23 chr6 2032709 2032884 -187246670 + MER5B DNA MER1_type 4 175 -3 25 0 0 0 chr6 2033042 2033067 -187246487 + AT_rich Low_complexity Low_complexity 1 25 0 245 309 119 40 chr6 2033372 2033498 -187246056 + L2 LINE L2 3136 3271 -1 691 260 73 0 chr6 2033914 2034106 -187245448 + MER3 DNA MER1_type 4 209 0 1871 126 72 0 chr6 2034223 2034501 -187245053 + AluSx SINE Alu 1 298 -14 264 337 0 20 chr6 2034634 2034735 -187244819 + L3 LINE CR1 1362 1460 -117 2138 125 13 0 chr6 2035047 2035352 -187244202 + AluSx SINE Alu 4 312 0 2783 10 0 0 chr6 2035573 2035874 -187243680 + AluY SINE Alu 1 301 -10 569 295 105 45 chr6 2036593 2036894 -187242660 - L2 LINE L2 -1 3312 2970 2121 93 45 0 chr6 2036894 2037183 -187242371 + AluSc SINE Alu 1 302 -7 569 295 105 45 chr6 2037183 2037373 -187242181 - L2 LINE L2 -343 2970 2793 2100 139 0 7 chr6 2037581 2037890 -187241664 + AluSx SINE Alu 1 307 -5 329 301 107 11 chr6 2038924 2039099 -187240455 + MIR SINE MIR 21 214 -48 293 354 0 0 chr6 2039225 2039324 -187240230 + L2 LINE L2 3210 3308 -5 365 296 176 0 chr6 2040959 2041101 -187238453 - MIR SINE MIR -12 250 84 37606 34 25 2 chr6 2041114 2046578 -187232976 + L1PA3 LINE L1 564 6155 0 245 167 0 17 chr6 2046579 2046639 -187232915 - Charlie4 DNA MER1_type -133 1828 1770 245 259 45 80 chr6 2047964 2048076 -187231478 + MIR SINE MIR 41 148 -114 274 211 28 0 chr6 2048205 2048276 -187231278 + (TG)n Simple_repeat Simple_repeat 1 73 0 5943 151 27 78 chr6 2049515 2050815 -187228739 - L1MA4A LINE L1 -7 6296 5007 748 207 7 0 chr6 2050815 2050950 -187228604 - AluJo SINE Alu -176 136 1 5943 151 27 78 chr6 2050950 2051402 -187228152 - L1MA4A LINE L1 -1296 5007 4533 10349 202 41 25 chr6 2051422 2056935 -187222619 - L1PA4 LINE L1 -4 6853 1270 270 200 12 62 chr6 2057031 2057111 -187222443 + MER116 DNA Mariner 1 76 -4 220 209 0 0 chr6 2058310 2058353 -187221201 + (CA)n Simple_repeat Simple_repeat 2 44 0 267 234 124 16 chr6 2058770 2058962 -187220592 - MER112 DNA MER1_type 0 260 21 24 32 0 0 chr6 2060084 2060115 -187219439 + AT_rich Low_complexity Low_complexity 1 31 0 2549 50 0 3 chr6 2060653 2060953 -187218601 - AluY SINE Alu -12 299 1 1918 143 11 0 chr6 2061686 2061973 -187217581 - AluJo SINE Alu -22 290 1 219 241 103 46 chr6 2062032 2062119 -187217435 + MIR SINE MIR 57 148 -114 238 253 0 81 chr6 2064483 2064570 -187214984 + MIR SINE MIR 128 207 -55 234 294 43 33 chr6 2065122 2065214 -187214340 - L2 LINE L2 0 3313 3221 263 242 10 30 chr6 2065626 2065725 -187213829 + GA-rich Low_complexity Low_complexity 1 97 0 372 366 72 19 chr6 2065726 2065988 -187213566 - L1MEd LINE L1 -5382 737 462 467 353 30 15 chr6 2067585 2067786 -187211768 + L3 LINE CR1 946 1149 -428 1136 173 133 41 chr6 2067790 2068061 -187211493 + AluJb SINE Alu 6 301 -11 716 327 110 36 chr6 2070140 2070639 -187208915 + L3 LINE CR1 457 992 -585 441 330 121 35 chr6 2070678 2071051 -187208503 + L3 LINE CR1 1167 1571 -6 722 255 210 13 chr6 2071243 2071557 -187207997 + HsTC2 DNA Tc2 24 399 -1499 * 783 227 48 13 chr6 2071554 2071783 -187207771 + HsTC2 DNA Tc2 1664 1900 0 273 348 11 11 chr6 2071855 2071947 -187207607 - L3 LINE CR1 -4 1573 1482 304 255 131 48 chr6 2072151 2072296 -187207258 + L1M LINE L1 5257 5413 -2395 23 24 0 24 chr6 2074197 2074215 -187205339 + AT_rich Low_complexity Low_complexity 1 18 -22 2034 100 14 14 chr6 2074215 2074504 -187205050 - AluSx SINE Alu -23 289 1 23 24 0 24 chr6 2074504 2074526 -187205028 + AT_rich Low_complexity Low_complexity 18 40 0 324 206 0 184 chr6 2076108 2076244 -187203310 - MIR3 SINE MIR -9 199 89 189 154 0 0 chr6 2077453 2077492 -187202062 + A-rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 2079923 2079944 -187199610 + AT_rich Low_complexity Low_complexity 1 21 0 2543 62 0 0 chr6 2081049 2081355 -187198199 + AluY SINE Alu 3 308 -3 2302 111 0 0 chr6 2082727 2083033 -187196521 + AluSx SINE Alu 1 306 -6 23 33 0 0 chr6 2084512 2084542 -187195012 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr6 2084609 2084634 -187194920 + AT_rich Low_complexity Low_complexity 1 25 0 355 314 109 6 chr6 2085447 2085603 -187193951 - L2 LINE L2 -229 3084 2913 244 342 9 45 chr6 2085640 2085751 -187193803 - MIR SINE MIR -129 133 27 496 268 31 0 chr6 2088578 2088705 -187190849 + MER5A DNA MER1_type 1 131 -58 202 255 0 0 chr6 2089943 2089990 -187189564 + L2 LINE L2 3267 3313 0 246 32 0 0 chr6 2091095 2091126 -187188428 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 287 302 43 43 chr6 2092879 2093018 -187186536 + MIR3 SINE MIR 1 139 -69 25 0 0 0 chr6 2093211 2093236 -187186318 + AT_rich Low_complexity Low_complexity 1 25 0 426 268 167 26 chr6 2096259 2096456 -187183098 - MIR SINE MIR -3 259 32 682 256 21 10 chr6 2097117 2097326 -187182228 - MIR SINE MIR -41 221 12 327 274 260 7 chr6 2098371 2098517 -187181037 + MER5A DNA MER1_type 3 185 -4 238 290 81 16 chr6 2101144 2101206 -187178348 + MIR SINE MIR 23 88 -174 611 229 0 0 chr6 2101302 2101411 -187178143 + FLAM_C SINE Alu 1 109 -34 261 0 0 0 chr6 2101422 2101451 -187178103 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 730 161 8 0 chr6 2101456 2101574 -187177980 - FLAM_C SINE Alu -24 119 1 992 194 0 0 chr6 2101586 2101761 -187177793 + AluJb SINE Alu 129 303 -9 22 0 0 0 chr6 2102165 2102187 -187177367 + AT_rich Low_complexity Low_complexity 1 22 0 1933 140 10 0 chr6 2102776 2103076 -187176478 - AluSx SINE Alu -7 305 3 2154 119 3 3 chr6 2104317 2104611 -187174943 - AluSq SINE Alu -9 304 11 306 275 38 0 chr6 2104666 2104746 -187174808 - MIR SINE MIR -134 128 46 453 231 25 100 chr6 2106055 2106215 -187173339 - MIR3 SINE MIR -31 177 30 421 200 0 0 chr6 2107594 2107669 -187171885 + Tigger5 DNA MER2_type 5 79 -2244 287 194 83 28 chr6 2107671 2107743 -187171811 - Tigger5 DNA MER2_type -6 2317 2242 * 339 217 0 0 chr6 2107739 2107808 -187171746 + Tigger5 DNA MER2_type 2255 2323 0 624 249 82 27 chr6 2108116 2108325 -187171229 - MIR SINE MIR -4 258 42 454 283 108 28 chr6 2111022 2111234 -187168320 - MIR SINE MIR 0 262 34 26 30 0 0 chr6 2111311 2111344 -187168210 + AT_rich Low_complexity Low_complexity 1 33 0 297 0 0 0 chr6 2111742 2111775 -187167779 + (CAT)n Simple_repeat Simple_repeat 1 33 0 1944 152 61 7 chr6 2111832 2112034 -187167520 - Charlie5 DNA MER1_type 0 2624 2434 1460 164 126 7 chr6 2112034 2112344 -187167210 - MER7A DNA MER2_type 0 346 2 1944 152 61 7 chr6 2112344 2112581 -187166973 - Charlie5 DNA MER1_type -190 2434 2161 1310 169 60 70 chr6 2112581 2112883 -187166671 + AluJo SINE Alu 1 299 -13 1058 208 0 0 chr6 2112896 2113079 -187166475 + FRAM SINE Alu 1 176 0 3190 200 79 39 chr6 2113079 2113480 -187166074 - Charlie5 DNA MER1_type -454 2170 1787 2402 73 7 3 chr6 2113480 2113780 -187165774 - AluSp SINE Alu -12 301 1 3190 200 79 39 chr6 2113780 2114649 -187164905 - Charlie5 DNA MER1_type -837 1787 823 719 139 9 0 chr6 2114649 2114764 -187164790 + MSTB LTR MaLR 1 116 -310 559 174 74 0 chr6 2114752 2114873 -187164681 + MSTB LTR MaLR 299 428 -4 * 1160 217 170 28 chr6 2114877 2115210 -187164344 - Charlie5 DNA MER1_type -1797 827 543 904 158 0 0 chr6 2115210 2115356 -187164198 + L1PB3 LINE L1 6008 6153 -1 1160 217 170 28 chr6 2115356 2115665 -187163889 - Charlie5 DNA MER1_type -2081 543 15 735 275 54 0 chr6 2115674 2115896 -187163658 - MIR SINE MIR -27 235 2 1092 223 157 55 chr6 2116180 2116638 -187162916 + MLT1D LTR MaLR 1 505 0 254 29 29 0 chr6 2118012 2118047 -187161507 + (TC)n Simple_repeat Simple_repeat 2 37 0 2501 155 23 32 chr6 2118394 2118865 -187160689 + MLT1C LTR MaLR 1 467 0 217 271 51 0 chr6 2119186 2119245 -187160309 + L2 LINE L2 3138 3199 -73 198 0 0 0 chr6 2120048 2120070 -187159484 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 315 283 126 25 chr6 2120212 2120371 -187159183 - MIR SINE MIR -37 225 51 1298 217 68 25 chr6 2120466 2120909 -187158645 - MER74B LTR ERVL -103 519 58 2135 108 0 11 chr6 2121399 2121716 -187157838 + AluSx SINE Alu 1 314 0 478 154 235 0 chr6 2121752 2121914 -187157640 - MER2 DNA MER2_type -26 319 120 498 180 30 0 chr6 2121914 2122014 -187157540 + FLAM_A SINE Alu 22 124 -18 542 184 149 0 chr6 2122014 2122128 -187157426 - MER2 DNA MER2_type -213 132 2 613 302 16 21 chr6 2122143 2122385 -187157169 + L1ME LINE L1 5336 5576 -586 213 310 0 0 chr6 2122665 2122723 -187156831 + MIR3 SINE MIR 149 206 -2 2202 115 3 0 chr6 2124554 2124866 -187154688 - AluSq SINE Alu 0 313 1 216 315 76 11 chr6 2125138 2125230 -187154324 - MIR3 SINE MIR -8 200 103 634 196 38 23 chr6 2126414 2126547 -187153007 + AluJo SINE Alu 1 135 -177 407 283 25 57 chr6 2126631 2126790 -187152764 + MIR3 SINE MIR 34 187 -21 21 57 0 19 chr6 2127195 2127212 -187152342 + AT_rich Low_complexity Low_complexity 1 17 -35 1534 91 55 0 chr6 2127212 2127466 -187152088 + L1MA2 LINE L1 6037 6304 0 21 57 0 19 chr6 2127466 2127501 -187152053 + AT_rich Low_complexity Low_complexity 17 52 0 192 283 0 19 chr6 2127610 2127663 -187151891 + MIR SINE MIR 69 120 -142 327 293 87 62 chr6 2128526 2128847 -187150707 + L1ME LINE L1 4259 4587 -1559 893 131 138 0 chr6 2129075 2129235 -187150319 + AluSq SINE Alu 132 313 0 567 299 83 56 chr6 2129251 2129877 -187149677 + L1ME LINE L1 4894 5547 -751 245 228 25 13 chr6 2129894 2129973 -187149581 + L1ME LINE L1 5612 5691 -430 22 35 0 0 chr6 2130300 2130329 -187149225 + AT_rich Low_complexity Low_complexity 1 29 0 225 65 0 0 chr6 2131010 2131041 -187148513 + (A)n Simple_repeat Simple_repeat 1 31 0 323 265 212 13 chr6 2133292 2133443 -187146111 - MER5A DNA MER1_type 0 189 9 513 180 18 81 chr6 2135342 2135453 -187144101 - Tigger2 DNA MER2_type -1 2717 2614 538 156 0 0 chr6 2135453 2135530 -187144024 - AluJ/FLAM SINE Alu -234 78 2 1392 81 113 57 chr6 2135531 2135653 -187143901 - Tigger2 DNA MER2_type -2456 262 148 2322 113 7 0 chr6 2135653 2135963 -187143591 - AluSx SINE Alu 0 312 1 1392 81 113 57 chr6 2135963 2136088 -187143466 - Tigger2 DNA MER2_type -2570 148 1 221 293 47 28 chr6 2136451 2136557 -187142997 - MIR SINE MIR -33 229 122 1419 151 98 19 chr6 2136711 2136976 -187142578 - AluJb SINE Alu -26 286 1 2240 97 7 0 chr6 2137165 2137455 -187142099 - AluY SINE Alu -19 292 1 191 265 191 0 chr6 2138347 2138415 -187141139 + MIR3 SINE MIR 15 95 -113 459 0 0 0 chr6 2138806 2138857 -187140697 + (CA)n Simple_repeat Simple_repeat 2 52 0 911 233 150 53 chr6 2139513 2139554 -187140000 - MLT2B1 LTR ERVL 0 520 484 216 67 0 0 chr6 2139554 2139584 -187139970 + (TG)n Simple_repeat Simple_repeat 1 30 0 911 233 150 53 chr6 2139584 2139881 -187139673 - MLT2B1 LTR ERVL -36 484 149 4208 201 55 7 chr6 2139910 2141335 -187138219 - ERVL-B1 LTR ERVL -4219 1545 2 1316 215 195 31 chr6 2141336 2141783 -187137771 - MLT2B1 LTR ERVL 0 520 1 231 254 37 74 chr6 2142018 2142207 -187137347 + L1MEd LINE L1 923 1104 -5015 228 230 144 58 chr6 2142520 2142659 -187136895 - MIR SINE MIR -26 236 86 234 293 29 71 chr6 2142702 2142842 -187136712 - MIR SINE MIR -69 193 60 191 304 54 22 chr6 2142878 2142970 -187136584 + MIR3 SINE MIR 95 189 -19 266 313 0 10 chr6 2143248 2143344 -187136210 + L2 LINE L2 1890 1984 -1330 203 346 0 39 chr6 2144014 2144092 -187135462 + L2 LINE L2 3238 3312 -1 1931 115 0 48 chr6 2145481 2145793 -187133761 + AluSx SINE Alu 11 307 -5 2380 96 3 0 chr6 2146068 2146380 -187133174 + AluSp SINE Alu 1 313 0 1884 180 0 3 chr6 2146490 2146795 -187132759 + AluJo SINE Alu 1 304 -8 2474 71 0 0 chr6 2146860 2147157 -187132397 + AluY SINE Alu 1 297 -14 480 186 72 0 chr6 2147470 2147567 -187131987 - MLT1A2 LTR MaLR -2 372 269 2313 79 0 7 chr6 2148557 2148849 -187130705 + AluSg1 SINE Alu 1 290 -19 345 264 138 75 chr6 2149040 2149388 -187130166 + L1MEd LINE L1 2659 3028 -3101 221 283 120 0 chr6 2150058 2150150 -187129404 - MIR SINE MIR -110 152 50 327 250 0 14 chr6 2150258 2150330 -187129224 - L2 LINE L2 -2 3311 3241 266 0 29 0 chr6 2150691 2150725 -187128829 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2065 126 0 3 chr6 2150730 2151015 -187128539 - AluSx SINE Alu -28 284 1 269 183 95 103 chr6 2151932 2152058 -187127496 - MIR SINE MIR -4 258 134 233 128 43 0 chr6 2152058 2152105 -187127449 - MIR SINE MIR -98 164 116 22 0 0 0 chr6 2152347 2152369 -187127185 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 2152409 2152441 -187127113 + AT_rich Low_complexity Low_complexity 1 32 0 2253 206 7 0 chr6 2153501 2153937 -187125617 + L1PA16 LINE L1 3648 4086 -2060 3331 152 6 11 chr6 2153938 2154330 -187125224 + L1PA16 LINE L1 5649 6039 -127 2745 130 25 35 chr6 2154330 2154762 -187124792 - MSTA LTR MaLR 0 428 1 3331 152 6 11 chr6 2154762 2154889 -187124665 + L1PA16 LINE L1 6039 6165 -1 1387 209 49 57 chr6 2155497 2155865 -187123689 + MLT1A1 LTR MaLR 1 365 0 30 0 0 0 chr6 2156778 2156808 -187122746 + AT_rich Low_complexity Low_complexity 1 30 0 187 196 206 52 chr6 2156899 2156996 -187122558 - L3 LINE CR1 -884 693 582 2301 84 0 26 chr6 2157032 2157342 -187122212 + AluY SINE Alu 1 302 -9 1081 276 157 28 chr6 2157418 2157586 -187121968 + L2 LINE L2 2353 2498 -815 13768 136 50 45 chr6 2157586 2158867 -187120687 + Tigger1 DNA MER2_type 1 1300 -1118 1805 161 0 7 chr6 2158867 2159152 -187120402 - AluJb SINE Alu -27 285 3 13768 136 50 45 chr6 2159152 2160277 -187119277 + Tigger1 DNA MER2_type 1300 2418 0 1081 276 157 28 chr6 2160277 2160727 -187118827 + L2 LINE L2 2498 3056 -257 590 175 165 10 chr6 2160760 2160954 -187118600 - MER5C DNA MER1_type 0 324 101 468 226 0 21 chr6 2161105 2161198 -187118356 - L2 LINE L2 -38 3275 3185 283 178 89 0 chr6 2162032 2162107 -187117447 - MIR SINE MIR -65 197 115 23 68 0 0 chr6 2162127 2162171 -187117383 + AT_rich Low_complexity Low_complexity 1 44 0 284 346 19 56 chr6 2163679 2163877 -187115677 - MIR SINE MIR -51 211 19 298 281 133 31 chr6 2165587 2165715 -187113839 - MER5A DNA MER1_type -2 187 36 422 313 48 12 chr6 2166527 2166693 -187112861 - MIR SINE MIR -70 192 21 6332 187 84 71 chr6 2167522 2169106 -187110448 + MER52A LTR ERV1 46 1755 0 1462 285 114 9 chr6 2169177 2169808 -187109746 + MER20B DNA MER1_type 30 726 -57 2468 63 10 0 chr6 2169867 2170167 -187109387 - AluY SINE Alu -8 303 1 742 199 0 22 chr6 2171846 2171982 -187107572 + FLAM_C SINE Alu 1 133 0 30 0 0 0 chr6 2171983 2172013 -187107541 + AT_rich Low_complexity Low_complexity 1 30 0 303 323 81 37 chr6 2174068 2174229 -187105325 + MIR SINE MIR 13 180 -82 323 248 181 53 chr6 2175498 2175764 -187103790 + L2 LINE L2 2678 2977 -337 278 298 69 30 chr6 2175901 2176032 -187103522 + L2 LINE L2 3137 3272 0 606 273 207 19 chr6 2176211 2176530 -187103024 - L2 LINE L2 0 3313 2935 187 294 49 29 chr6 2177551 2177653 -187101901 - L2 LINE L2 -275 3038 2935 330 263 88 18 chr6 2180548 2180662 -187098892 - L2 LINE L2 -1 3271 3150 1086 219 35 0 chr6 2180664 2180865 -187098689 - MER3 DNA MER1_type 0 209 2 430 300 86 49 chr6 2181181 2181424 -187098130 - MIR SINE MIR 0 262 11 530 325 48 11 chr6 2181511 2181779 -187097775 + L2 LINE L2 2543 2820 -494 2358 92 3 0 chr6 2182123 2182418 -187097136 + AluSp SINE Alu 1 296 -17 626 210 150 18 chr6 2182783 2182950 -187096604 - MER5A DNA MER1_type 0 189 1 814 256 58 73 chr6 2183246 2183641 -187095913 - MLT1J LTR MaLR -86 425 37 329 140 0 0 chr6 2183781 2183831 -187095723 + L2 LINE L2 3223 3272 0 307 382 14 7 chr6 2184487 2184631 -187094923 - MIR3 SINE MIR -43 165 21 420 71 0 0 chr6 2185695 2185751 -187093803 + (CA)n Simple_repeat Simple_repeat 2 57 0 189 0 0 0 chr6 2185753 2185774 -187093780 + (TC)n Simple_repeat Simple_repeat 2 22 0 438 283 205 10 chr6 2186325 2186530 -187093024 + MIR SINE MIR 18 262 0 306 274 24 0 chr6 2186648 2186732 -187092822 + MLT1L LTR MaLR 191 276 -339 2054 133 148 13 chr6 2186942 2187319 -187092235 + MSTA LTR MaLR 1 428 0 198 0 0 0 chr6 2188854 2188876 -187090678 + (A)n Simple_repeat Simple_repeat 1 22 0 372 270 56 92 chr6 2189436 2189632 -187089922 + MIR SINE MIR 28 216 -46 1891 197 70 95 chr6 2190076 2190457 -187089097 + L1MC5 LINE L1 6738 7127 -834 1952 159 18 9 chr6 2190457 2190797 -187088757 - MER2 DNA MER2_type 0 344 2 1891 197 70 95 chr6 2190797 2190828 -187088726 + L1MC5 LINE L1 7127 7157 -804 769 204 0 0 chr6 2190828 2190960 -187088594 - FLAM_C SINE Alu 0 133 2 1891 197 70 95 chr6 2190960 2191383 -187088171 + L1MC5 LINE L1 7157 7515 -446 325 234 28 19 chr6 2191385 2191412 -187088142 + GA-rich Low_complexity Low_complexity 2 27 -82 1936 136 96 6 chr6 2191412 2191744 -187087810 - THE1B LTR MaLR -2 362 1 325 234 28 19 chr6 2191744 2191823 -187087731 + GA-rich Low_complexity Low_complexity 27 109 0 874 245 68 45 chr6 2191823 2192264 -187087290 + L1MC5 LINE L1 7475 7925 -36 492 214 0 0 chr6 2192729 2192818 -187086736 + FLAM_A SINE Alu 5 93 -49 22 94 0 0 chr6 2193494 2193558 -187085996 + AT_rich Low_complexity Low_complexity 1 64 0 26 0 0 0 chr6 2194796 2194822 -187084732 + AT_rich Low_complexity Low_complexity 1 26 0 249 296 68 0 chr6 2194922 2195010 -187084544 - MIR SINE MIR -85 177 84 951 179 6 0 chr6 2195098 2195260 -187084294 + FRAM SINE Alu 1 163 -13 574 206 269 36 chr6 2195600 2195853 -187083701 - MER5C DNA MER1_type 0 324 13 268 109 0 43 chr6 2195965 2195977 -187083577 - MER46A DNA MER2_type -82 154 145 564 181 93 7 chr6 2195977 2196116 -187083438 + Tigger4(Zombi) DNA MER2_type 1 155 -2576 * 5242 139 17 15 chr6 2196110 2196978 -187082576 + Tigger4(Zombi) DNA MER2_type 1862 2731 0 1163 209 42 72 chr6 2197044 2197351 -187082203 + AluJo SINE Alu 4 301 -1 2434 59 0 26 chr6 2197531 2197834 -187081720 - AluY SINE Alu -16 295 1 1686 156 99 47 chr6 2198934 2199246 -187080308 + MLT2D LTR ERVL 8 302 -112 279 0 0 0 chr6 2199246 2199277 -187080277 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 1686 156 99 47 chr6 2199277 2199296 -187080258 + MLT2D LTR ERVL 302 319 -95 198 103 0 0 chr6 2199296 2199325 -187080229 + (TA)n Simple_repeat Simple_repeat 1 29 0 1686 156 99 47 chr6 2199325 2199376 -187080178 + MLT2D LTR ERVL 319 411 -3 463 318 180 23 chr6 2199526 2200353 -187079201 - L2 LINE L2 -559 2755 1799 500 225 230 6 chr6 2200961 2201139 -187078415 - MIR SINE MIR 0 262 45 1801 158 0 34 chr6 2201184 2201505 -187078049 + AluJb SINE Alu 1 311 0 216 135 0 0 chr6 2202152 2202189 -187077365 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 297 235 42 42 chr6 2203188 2203307 -187076247 + L1ME4a LINE L1 6001 6119 -2 185 105 0 26 chr6 2203330 2203368 -187076186 + (TA)n Simple_repeat Simple_repeat 2 38 0 1584 166 34 48 chr6 2205436 2205731 -187073823 + AluJo SINE Alu 1 291 -21 1509 198 0 20 chr6 2207422 2207720 -187071834 + AluJb SINE Alu 1 292 -20 256 214 207 35 chr6 2208734 2208879 -187070675 - LTR67 LTR ERVL -25 532 363 670 194 29 24 chr6 2209088 2209258 -187070296 + L1MB5 LINE L1 5941 6111 -63 874 206 75 20 chr6 2209531 2209684 -187069870 - MER58A DNA MER1_type -2207 213 45 1955 138 0 16 chr6 2209684 2209989 -187069565 + AluSx SINE Alu 1 300 -12 874 206 75 20 chr6 2209989 2210034 -187069520 - MER58A DNA MER1_type -2375 45 4 384 181 181 0 chr6 2210132 2210226 -187069328 - L2 LINE L2 -6 3307 3197 2125 82 0 4 chr6 2210511 2210778 -187068776 + AluSq SINE Alu 40 305 -8 2308 77 3 0 chr6 2211011 2211296 -187068258 + AluSp SINE Alu 22 307 -6 1518 196 26 22 chr6 2211670 2211981 -187067573 + AluJo SINE Alu 1 312 0 1808 227 57 41 chr6 2212051 2212562 -187066992 + LTR40a LTR ERVL 1 519 0 2307 106 0 0 chr6 2213666 2213968 -187065586 - AluSx SINE Alu -10 302 1 1288 146 77 49 chr6 2214252 2214498 -187065056 + AluJo SINE Alu 1 253 -59 484 111 81 0 chr6 2214900 2214999 -187064555 + L1MA5 LINE L1 6194 6300 0 2158 113 7 10 chr6 2215191 2215492 -187064062 + AluSx SINE Alu 1 300 -12 2281 78 0 45 chr6 2215834 2216143 -187063411 - AluY SINE Alu -16 295 1 987 154 13 0 chr6 2216620 2216776 -187062778 + AluSg/x SINE Alu 153 310 0 269 233 0 0 chr6 2216830 2216890 -187062664 + MIR SINE MIR 200 259 -3 1305 223 18 24 chr6 2217015 2217343 -187062211 + MSTB1-int LTR MaLR 471 796 -855 977 147 73 82 chr6 2217365 2217597 -187061957 + MSTB1-int LTR MaLR 1422 1651 0 2476 138 58 10 chr6 2217597 2218009 -187061545 + MSTB1 LTR MaLR 1 432 0 335 271 231 5 chr6 2218807 2219010 -187060544 + MIR SINE MIR 4 252 -10 1728 158 3 37 chr6 2219990 2220312 -187059242 - AluJo SINE Alu -1 311 1 491 247 140 5 chr6 2220349 2220535 -187059019 + MIR SINE MIR 51 261 -1 24 0 0 0 chr6 2221433 2221457 -187058097 + GC_rich Low_complexity Low_complexity 1 24 0 2434 76 0 3 chr6 2223096 2223397 -187056157 + AluSq SINE Alu 1 300 -13 1617 172 151 9 chr6 2223670 2224001 -187055553 - MLT1B LTR MaLR -10 380 3 1123 167 44 0 chr6 2224232 2224436 -187055118 + MER20 DNA MER1_type 6 218 -1 4318 181 35 27 chr6 2225090 2225929 -187053625 + MER21B LTR ERV1 10 854 -9 289 320 17 3 chr6 2225938 2226075 -187053479 - MIR SINE MIR -62 146 18 590 182 172 35 chr6 2226416 2226619 -187052935 - L1MD2 LINE L1 -11 6348 6118 1350 187 97 0 chr6 2226626 2226894 -187052660 - AluJb SINE Alu -18 294 1 822 151 0 22 chr6 2226901 2227040 -187052514 - AluJo SINE Alu -176 136 1 2039 189 72 72 chr6 2227040 2227232 -187052322 - L1MD2 LINE L1 -226 6133 5942 1637 181 29 0 chr6 2227232 2227508 -187052046 + AluJo SINE Alu 1 284 -28 2039 189 72 72 chr6 2227508 2227635 -187051919 - L1MD2 LINE L1 -417 5942 5816 2141 101 3 3 chr6 2227635 2227922 -187051632 - AluSx SINE Alu -25 287 1 712 268 60 40 chr6 2227922 2228172 -187051382 - L1MB8 LINE L1 -353 5825 5571 2039 189 72 72 chr6 2227922 2228140 -187051414 - L1MD2 LINE L1 -542 5817 5595 271 221 13 26 chr6 2228195 2228272 -187051282 + LTR33A LTR ERVL 446 521 -2 222 37 0 0 chr6 2228410 2228437 -187051117 + (T)n Simple_repeat Simple_repeat 1 27 0 2410 90 0 3 chr6 2228678 2228979 -187050575 - AluSp SINE Alu -13 300 1 1157 134 0 0 chr6 2229290 2229461 -187050093 - AluSx SINE Alu -4 306 136 572 114 0 0 chr6 2229461 2229540 -187050014 - AluSx SINE Alu -228 84 6 213 132 0 0 chr6 2229555 2229593 -187049961 + (T)n Simple_repeat Simple_repeat 1 38 0 438 276 0 24 chr6 2230824 2230951 -187048603 + MLT1L LTR MaLR 127 250 -365 1390 246 57 38 chr6 2231065 2231553 -187048001 - MLT1H1 LTR MaLR -83 472 7 1845 245 39 11 chr6 2231614 2232125 -187047429 - MLT1E LTR MaLR 0 593 1 773 232 40 119 chr6 2232140 2232648 -187046906 - MLT1H1 LTR MaLR -34 521 71 2557 77 3 0 chr6 2232867 2233179 -187046375 + AluSp SINE Alu 1 313 0 478 281 88 11 chr6 2233338 2233555 -187045999 + MLT1L LTR MaLR 263 605 -10 225 0 0 0 chr6 2233819 2233844 -187045710 + (T)n Simple_repeat Simple_repeat 1 25 0 960 186 155 75 chr6 2233865 2234214 -187045340 + MSTD LTR MaLR 1 377 -19 414 0 0 0 chr6 2234214 2234260 -187045294 + (CA)n Simple_repeat Simple_repeat 1 46 0 1885 216 42 13 chr6 2234427 2234881 -187044673 - MLT1C LTR MaLR 0 467 1 530 268 82 41 chr6 2235097 2235317 -187044237 - MIR SINE MIR -14 248 20 647 309 62 9 chr6 2235406 2235726 -187043828 - L1MC/D LINE L1 -2217 5591 5255 667 178 45 45 chr6 2235867 2236024 -187043530 - FRAM SINE Alu -5 161 5 1145 161 75 54 chr6 2236024 2236169 -187043385 - AluJo SINE Alu 0 312 12 2284 118 0 7 chr6 2236462 2236766 -187042788 - AluSx SINE Alu -10 302 1 25 31 0 0 chr6 2237245 2237277 -187042277 + AT_rich Low_complexity Low_complexity 1 32 0 5877 195 30 23 chr6 2237280 2238628 -187040926 - L1MC1 LINE L1 0 6333 4957 231 36 0 0 chr6 2238628 2238656 -187040898 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5877 195 30 23 chr6 2238656 2239881 -187039673 - L1MC1 LINE L1 -1376 4957 3742 619 222 15 0 chr6 2240077 2240212 -187039342 - MLT1G1 LTR MaLR 0 595 459 336 265 185 31 chr6 2240221 2240462 -187039092 - MLT1G1 LTR MaLR -196 346 98 * 896 211 5 0 chr6 2240459 2240644 -187038910 + MLT1B LTR MaLR 205 390 0 1115 189 110 8 chr6 2241492 2241756 -187037798 - MER21B LTR ERV1 -554 309 19 347 279 0 0 chr6 2241779 2241858 -187037696 - MER21B LTR ERV1 -773 90 12 22 0 0 0 chr6 2242761 2242783 -187036771 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr6 2242956 2242979 -187036575 + (A)n Simple_repeat Simple_repeat 1 23 0 283 169 17 51 chr6 2243500 2243559 -187035995 - L2 LINE L2 0 3313 3257 22 0 0 0 chr6 2244601 2244623 -187034931 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr6 2244797 2244818 -187034736 + (A)n Simple_repeat Simple_repeat 1 21 0 283 169 17 51 chr6 2245339 2245398 -187034156 - L2 LINE L2 0 3313 3257 605 92 0 0 chr6 2245605 2245681 -187033873 + AluSq/x SINE Alu 36 111 -201 1676 266 246 5 chr6 2245730 2246217 -187033337 - L2 LINE L2 -1937 1377 1009 342 0 0 0 chr6 2246217 2246255 -187033299 + (TG)n Simple_repeat Simple_repeat 2 39 0 1676 266 246 5 chr6 2246255 2246659 -187032895 - L2 LINE L2 -2305 1009 271 372 177 42 186 chr6 2246663 2246878 -187032676 - MER5A DNA MER1_type -1 188 5 566 234 64 0 chr6 2246881 2247022 -187032532 + MER33 DNA MER1_type 8 157 -167 1490 158 12 12 chr6 2247029 2247275 -187032279 + AluJo SINE Alu 5 250 -62 1393 192 38 23 chr6 2247295 2247639 -187031915 - MLT1A1 LTR MaLR -11 354 6 1937 156 0 14 chr6 2247658 2247946 -187031608 - AluJo SINE Alu -28 284 1 379 187 73 0 chr6 2247947 2248070 -187031484 + MER33 DNA MER1_type 165 296 -28 250 299 133 14 chr6 2248120 2248331 -187031223 - L2 LINE L2 -3037 277 42 661 229 16 0 chr6 2248332 2248515 -187031039 - MER114 LTR ERV -447 201 16 4896 135 19 37 chr6 2248610 2249497 -187030057 - MER4D LTR ERV1 0 872 2 505 279 31 12 chr6 2249922 2250083 -187029471 + MER41C LTR ERV1 1 164 -390 349 216 14 0 chr6 2250074 2250148 -187029406 + MER41D LTR ERV1 483 557 0 * 1147 168 0 0 chr6 2251704 2251877 -187027677 + FAM SINE Alu 1 173 -2 831 201 0 12 chr6 2253242 2253406 -187026148 + MER5B DNA MER1_type 17 178 0 557 243 18 41 chr6 2254165 2254393 -187025161 + L1ME2 LINE L1 5941 6166 0 270 255 38 19 chr6 2254502 2254608 -187024946 + L1MC4 LINE L1 7924 8031 -11 410 280 49 7 chr6 2254785 2254928 -187024626 - MIR SINE MIR -2 260 112 198 0 0 0 chr6 2255004 2255026 -187024528 + (T)n Simple_repeat Simple_repeat 1 22 0 302 143 0 20 chr6 2255026 2255075 -187024479 - MER5B DNA MER1_type -114 64 17 21 0 0 0 chr6 2255214 2255235 -187024319 + AT_rich Low_complexity Low_complexity 1 21 0 212 59 29 0 chr6 2255270 2255304 -187024250 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2109 75 0 0 chr6 2255306 2255560 -187023994 - AluY SINE Alu -31 280 27 2380 101 0 0 chr6 2255560 2255864 -187023690 - AluSx SINE Alu -6 306 1 2137 117 7 0 chr6 2255992 2256282 -187023272 - AluSx SINE Alu -20 292 1 7878 165 14 23 chr6 2256284 2256716 -187022838 - L1MA9 LINE L1 -61 6251 5817 2438 68 0 0 chr6 2256716 2257011 -187022543 - AluY SINE Alu 0 311 17 7878 165 14 23 chr6 2257011 2259123 -187020431 - L1MA9 LINE L1 -495 5817 3728 873 364 35 33 chr6 2260511 2261053 -187018501 - L2 LINE L2 -30 3242 2695 1823 140 3 56 chr6 2261059 2261207 -187018347 + AluSx SINE Alu 1 124 -188 2352 92 10 0 chr6 2261207 2261512 -187018042 + AluSp SINE Alu 1 308 -5 1823 140 3 56 chr6 2261512 2261684 -187017870 + AluSx SINE Alu 124 304 -8 23 0 0 0 chr6 2261758 2261781 -187017773 + AT_rich Low_complexity Low_complexity 1 23 0 707 266 104 70 chr6 2262425 2262861 -187016693 + L1MEc LINE L1 789 1209 -5187 2225 128 10 49 chr6 2262861 2263251 -187016303 - THE1C LTR MaLR 0 375 1 707 266 104 70 chr6 2263251 2263541 -187016013 + L1MEc LINE L1 1209 1557 -4839 705 197 31 0 chr6 2263541 2263668 -187015886 + FLAM_A SINE Alu 1 131 -2 707 266 104 70 chr6 2263668 2263882 -187015672 + L1MEc LINE L1 1557 1762 -4634 889 274 133 9 chr6 2263993 2264642 -187014912 + L1MEc LINE L1 3198 3926 -2289 30032 107 14 59 chr6 2264648 2271094 -187008460 + L1PA7 LINE L1 12 6153 -1 5625 143 35 14 chr6 2271216 2272579 -187006975 + L1PB3 LINE L1 4186 5518 -705 1992 146 9 25 chr6 2272579 2272894 -187006660 - AluJo SINE Alu -2 310 1 5625 143 35 14 chr6 2272894 2272987 -187006567 + L1PB3 LINE L1 5518 5607 -616 1620 149 16 68 chr6 2272987 2273308 -187006246 + AluJb SINE Alu 3 306 -6 5625 143 35 14 chr6 2273308 2273851 -187005703 + L1PB3 LINE L1 5607 6223 0 1646 248 139 16 chr6 2273885 2274774 -187004780 + L1M4 LINE L1 4268 5266 -880 186 43 0 0 chr6 2275382 2275405 -187004149 + (T)n Simple_repeat Simple_repeat 1 23 0 1844 146 45 3 chr6 2275722 2276058 -187003496 - LTR35 LTR ERV1 0 618 269 1079 97 11 17 chr6 2276058 2276233 -187003321 + THE1C-int LTR MaLR 1407 1580 0 2074 102 6 42 chr6 2276233 2276594 -187002960 + THE1C LTR MaLR 1 431 -26 1975 195 103 55 chr6 2276654 2277171 -187002383 + MER31-int LTR ERV1 3266 3757 -2512 2232 148 13 82 chr6 2277171 2277624 -187001930 - MER61B LTR ERV1 -3 422 1 1975 195 103 55 chr6 2277624 2277651 -187001903 + MER31-int LTR ERV1 3757 5132 -1137 1289 150 0 162 chr6 2277651 2278010 -187001544 + AluSx SINE Alu 6 306 -6 871 164 26 9 chr6 2278018 2278194 -187001360 + MER31-int LTR ERV1 3861 4010 -926 18261 62 3 22 chr6 2278234 2281420 -186998134 + L1PA6 LINE L1 2974 6154 0 22863 74 3 5 chr6 2281425 2284486 -186995068 + HERVL-A1 LTR ERVL 1564 4617 -1037 19538 65 20 12 chr6 2284590 2289119 -186990435 - Harlequin LTR ERV1 -1684 5212 575 447 35 0 0 chr6 2289219 2289277 -186990277 + HERVL-A1 LTR ERVL 5597 5654 0 3112 68 57 9 chr6 2289277 2289660 -186989894 + MLT2A1 LTR ERVL 1 407 -37 243 0 0 0 chr6 2289660 2289687 -186989867 + (TA)n Simple_repeat Simple_repeat 1 27 0 3112 68 57 9 chr6 2289687 2289727 -186989827 + MLT2A1 LTR ERVL 407 444 0 753 221 111 23 chr6 2291571 2291587 -186987967 + MLT1J LTR MaLR 217 230 -281 2428 102 0 3 chr6 2291587 2291901 -186987653 - AluSq SINE Alu 0 313 1 753 221 111 23 chr6 2291901 2292101 -186987453 + MLT1J LTR MaLR 230 452 -59 499 224 48 20 chr6 2292192 2292328 -186987226 + MLT1A1 LTR MaLR 1 140 -225 1367 148 4 13 chr6 2292328 2292565 -186986989 - MER21B LTR ERV1 0 863 629 1812 166 73 34 chr6 2292565 2293005 -186986549 - LTR2B LTR ERV1 0 490 34 42163 62 24 18 chr6 2293019 2299805 -186979749 - Harlequin LTR ERV1 0 6896 1 1804 184 84 32 chr6 2299805 2300267 -186979287 - LTR2B LTR ERV1 0 490 5 * 3251 171 57 11 chr6 2300256 2300290 -186979264 - MER21B LTR ERV1 -225 638 607 207 0 0 0 chr6 2300290 2300313 -186979241 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3251 171 57 11 chr6 2300313 2300888 -186978666 - MER21B LTR ERV1 -256 607 1 2115 170 30 25 chr6 2300973 2301409 -186978145 - MER21B-int LTR ERV1 -55 4136 3699 2113 184 100 107 chr6 2301413 2302250 -186977304 - LTR28 LTR ERV1 0 1020 109 400 239 254 0 chr6 2302262 2302404 -186977150 - LTR28 LTR ERV1 -842 178 1 3009 165 79 2 chr6 2302404 2302985 -186976569 - MER21B-int LTR ERV1 -494 3697 3072 9055 210 39 30 chr6 2303427 2305150 -186974404 - L1M4c LINE L1 -1167 5215 3509 2335 119 3 0 chr6 2305150 2305461 -186974093 - AluSx SINE Alu 0 312 1 9055 210 39 30 chr6 2305461 2306092 -186973462 - L1M4c LINE L1 -2873 3509 2885 2092 149 126 5 chr6 2306092 2306474 -186973080 + MSTA LTR MaLR 1 428 0 8941 177 29 1 chr6 2306474 2308080 -186971474 + MSTA-int LTR MaLR 1 1651 0 2046 147 126 11 chr6 2308080 2308462 -186971092 + MSTA LTR MaLR 1 426 -2 9055 210 39 30 chr6 2308462 2308826 -186970728 - L1M4c LINE L1 -3496 2886 2470 916 234 60 22 chr6 2308847 2309095 -186970459 - L1M4c LINE L1 -3916 2468 2231 500 30 0 15 chr6 2309095 2309162 -186970392 + (TA)n Simple_repeat Simple_repeat 2 67 0 2231 101 7 13 chr6 2309162 2309460 -186970094 - AluSp SINE Alu -17 296 1 916 234 60 22 chr6 2309460 2309574 -186969980 - L1M4c LINE L1 -4152 2232 2091 1831 258 30 25 chr6 2309744 2310387 -186969167 - L1M4c LINE L1 -4663 1721 1076 371 98 16 0 chr6 2310415 2310476 -186969078 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 1972 158 10 0 chr6 2310476 2310780 -186968774 - AluSx SINE Alu -5 307 1 843 275 48 3 chr6 2310788 2310990 -186968564 - L1 LINE L1 -4813 1840 1616 267 31 0 0 chr6 2310990 2311022 -186968532 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 843 275 48 3 chr6 2311022 2311154 -186968400 - L1 LINE L1 -5037 1616 1491 246 345 11 0 chr6 2311433 2311520 -186968034 - L1 LINE L1 -5219 1434 1347 285 200 0 0 chr6 2312031 2312091 -186967463 + L1MC5 LINE L1 7345 7404 -557 891 234 10 5 chr6 2312399 2312608 -186966946 - MLT1C LTR MaLR 0 467 258 735 226 14 14 chr6 2312643 2312825 -186966729 - FRAM SINE Alu 0 182 1 1844 160 49 0 chr6 2312837 2313153 -186966401 - AluSx SINE Alu 0 312 6 662 218 71 0 chr6 2313157 2313327 -186966227 - MLT1C LTR MaLR -285 182 1 1586 111 0 5 chr6 2313420 2313627 -186965927 + AluSg/x SINE Alu 95 300 -10 1305 217 41 77 chr6 2314380 2314823 -186964731 + L1ME2 LINE L1 5555 5981 -183 311 143 32 0 chr6 2314873 2314936 -186964618 - L1PA13 LINE L1 0 6163 6099 378 295 75 20 chr6 2315428 2315723 -186963831 + L1MEd LINE L1 981 1291 -4914 234 207 207 11 chr6 2315890 2315977 -186963577 + HAL1 LINE L1 1500 1603 -904 1698 171 24 20 chr6 2316082 2316187 -186963367 + AluJo SINE Alu 6 109 -203 2142 129 36 38 chr6 2316187 2316552 -186963002 - THE1B LTR MaLR 0 364 1 1698 171 24 20 chr6 2316552 2316738 -186962816 + AluJo SINE Alu 109 298 -14 1564 173 32 160 chr6 2316993 2317554 -186962000 + LTR45B LTR ERV1 1 489 0 2409 95 0 0 chr6 2317603 2317950 -186961604 + L1PB1 LINE L1 5624 5970 -181 942 112 0 0 chr6 2317950 2318075 -186961479 + AluSq/x SINE Alu 1 125 -188 1247 116 5 11 chr6 2318081 2318270 -186961284 + L1PB1 LINE L1 5959 6146 -5 281 216 14 0 chr6 2318386 2318460 -186961094 - Charlie1 DNA MER1_type -506 2255 2181 390 245 73 55 chr6 2318508 2318835 -186960719 + L1MEd LINE L1 2120 2452 -3944 1208 149 6 0 chr6 2318847 2319022 -186960532 + AluSx SINE Alu 1 176 -136 619 224 22 22 chr6 2319047 2319230 -186960324 + L1ME3A LINE L1 5774 5956 -214 339 272 0 0 chr6 2319393 2319518 -186960036 + (TA)n Simple_repeat Simple_repeat 1 125 0 2334 160 54 69 chr6 2319521 2320116 -186959438 + L1MA5A LINE L1 1416 2001 -4788 576 187 0 0 chr6 2320117 2320240 -186959314 + GA-rich Low_complexity Low_complexity 3 125 0 2242 233 19 4 chr6 2320240 2320827 -186958727 + L1MA5A LINE L1 1987 2572 -4217 2350 88 109 21 chr6 2320828 2321214 -186958340 - MER4A LTR ERV1 0 664 245 8153 197 16 26 chr6 2321249 2321974 -186957580 + L1MA5A LINE L1 3388 4119 -2669 1978 132 0 7 chr6 2321974 2322246 -186957308 + AluSg SINE Alu 1 270 -40 8153 197 16 26 chr6 2322246 2323517 -186956037 + L1MA5A LINE L1 4119 5362 -1426 1523 195 85 13 chr6 2324672 2325061 -186954493 + L1MA5A LINE L1 5344 5760 -1028 732 74 11 0 chr6 2325066 2325161 -186954393 - AluSg/x SINE Alu -102 208 113 3819 126 23 16 chr6 2325284 2325363 -186954191 + L1MA5A LINE L1 5898 5975 -964 2166 135 0 0 chr6 2325363 2325659 -186953895 + AluSx SINE Alu 1 296 -16 3819 126 23 16 chr6 2325659 2326112 -186953442 + L1MA5A LINE L1 5975 6439 -500 432 0 0 0 chr6 2326112 2326160 -186953394 + (CA)n Simple_repeat Simple_repeat 2 49 0 3819 126 23 16 chr6 2326160 2326310 -186953244 + L1MA5A LINE L1 6439 6586 -353 373 75 25 88 chr6 2326306 2326328 -186953226 - L1MB4 LINE L1 -77 6103 6081 * 514 99 0 25 chr6 2326328 2326409 -186953145 - MADE1 DNA Mariner 0 80 2 373 75 25 88 chr6 2326409 2326466 -186953088 - L1MB4 LINE L1 -99 6081 6029 243 241 25 51 chr6 2326569 2326648 -186952906 - L2 LINE L2 0 3313 3237 * 292 243 14 0 chr6 2326645 2326715 -186952839 - MIR SINE MIR -3 259 189 270 244 38 28 chr6 2327276 2327394 -186952160 + MER5A DNA MER1_type 1 181 -8 2336 95 3 13 chr6 2327574 2327890 -186951664 - AluSq SINE Alu 0 313 1 300 247 54 11 chr6 2327902 2327995 -186951559 + MER58C DNA MER1_type 119 215 0 356 231 8 45 chr6 2328371 2328505 -186951049 - L1MC/D LINE L1 -2006 5802 5674 1866 157 11 55 chr6 2329080 2329122 -186950432 + MER89 LTR ERV1 195 237 -322 1800 140 11 18 chr6 2329122 2329407 -186950147 - AluJb SINE Alu -19 293 11 1866 157 11 55 chr6 2329407 2329746 -186949808 + MER89 LTR ERV1 237 559 0 428 167 78 29 chr6 2330038 2330140 -186949414 + MER89-int LTR ERV1 444 550 -6251 317 239 0 0 chr6 2330146 2330217 -186949337 + MER89-int LTR ERV1 520 590 -6211 * 1062 241 96 21 chr6 2330208 2330582 -186948972 + MER89-int LTR ERV1 878 1279 -5522 645 175 0 0 chr6 2330582 2330685 -186948869 + FLAM_C SINE Alu 16 118 -25 1042 212 8 115 chr6 2330711 2331112 -186948442 + MER89-int LTR ERV1 1274 1631 -5170 1832 248 77 64 chr6 2331177 2331946 -186947608 + MER89-int LTR ERV1 1650 2428 -4373 4149 143 18 28 chr6 2332237 2332493 -186947061 - L1PA16 LINE L1 0 6166 5909 1903 147 0 39 chr6 2332493 2332805 -186946749 + AluJb SINE Alu 1 300 -12 4149 143 18 28 chr6 2332805 2332947 -186946607 - L1PA16 LINE L1 -257 5909 5767 2172 75 3 10 chr6 2332947 2333263 -186946291 - AluY SINE Alu 0 311 1 4149 143 18 28 chr6 2333263 2333677 -186945877 - L1PA16 LINE L1 -399 5767 5361 509 229 9 9 chr6 2334670 2334788 -186944766 + MIR3 SINE MIR 69 187 -21 25 31 0 0 chr6 2335185 2335217 -186944337 + AT_rich Low_complexity Low_complexity 1 32 0 910 121 7 0 chr6 2335229 2335378 -186944176 + L1MA5A LINE L1 6146 6295 -2 487 224 74 20 chr6 2335831 2336022 -186943532 + MER58 DNA MER1_type 5 2417 -3 855 115 0 39 chr6 2338002 2338132 -186941422 - FLAM_C SINE Alu -7 126 2 2643 43 0 0 chr6 2338142 2338443 -186941111 - AluY SINE Alu -10 301 1 245 272 101 32 chr6 2338862 2339020 -186940534 + L2 LINE L2 2537 2705 -609 4431 162 34 28 chr6 2339022 2339067 -186940487 - L1MB4 LINE L1 -6 6174 6131 2400 92 0 3 chr6 2339067 2339373 -186940181 - AluSx SINE Alu -7 305 1 4431 162 34 28 chr6 2339373 2340221 -186939333 - L1MB4 LINE L1 -49 6131 5276 276 186 0 0 chr6 2340474 2340517 -186939037 - Alu SINE Alu -264 44 2 45 19 0 0 chr6 2391014 2391066 -186888488 + AT_rich Low_complexity Low_complexity 1 52 0 2725 18 16 0 chr6 2391066 2391466 -186888088 - L1PA4 LINE L1 -677 5478 5075 5972 21 6 0 chr6 2391466 2392144 -186887410 + L1PA4 LINE L1 5472 6154 -1 40 0 0 0 chr6 2392173 2392213 -186887341 + AT_rich Low_complexity Low_complexity 1 40 0 1051 260 9 0 chr6 2392445 2392664 -186886890 + MER58A DNA MER1_type 4 224 0 1143 158 164 75 chr6 2392913 2393248 -186886306 + MLT1A1 LTR MaLR 1 365 0 243 331 7 44 chr6 2393379 2393515 -186886039 - L2 LINE L2 -213 3059 2929 271 272 163 34 chr6 2394334 2394481 -186885073 + MIR3 SINE MIR 32 197 -11 356 211 56 7 chr6 2395514 2395656 -186883898 + (CA)n Simple_repeat Simple_repeat 2 150 0 327 131 54 15 chr6 2395695 2395825 -186883729 + (CA)n Simple_repeat Simple_repeat 2 136 0 473 208 46 17 chr6 2395867 2396040 -186883514 + (CA)n Simple_repeat Simple_repeat 2 179 0 1130 191 106 25 chr6 2396978 2397260 -186882294 - MER2 DNA MER2_type -28 317 13 425 198 10 0 chr6 2397560 2397661 -186881893 + GA-rich Low_complexity Low_complexity 3 104 0 305 198 293 0 chr6 2397661 2397777 -186881777 + MER103 DNA DNA 1 150 -16 207 0 0 0 chr6 2398780 2398803 -186880751 + (A)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr6 2399042 2399067 -186880487 + AT_rich Low_complexity Low_complexity 1 25 0 207 301 186 9 chr6 2399179 2399292 -186880262 + MIR3 SINE MIR 9 141 -67 343 309 32 0 chr6 2399763 2399889 -186879665 + L2 LINE L2 3182 3311 -2 2370 85 0 0 chr6 2400434 2400729 -186878825 + AluSc SINE Alu 1 295 -14 2228 122 0 6 chr6 2401075 2401386 -186878168 + AluSx SINE Alu 3 311 -1 1431 45 6 0 chr6 2403212 2403390 -186876164 - L1PA4 LINE L1 -3 6152 5974 392 171 14 0 chr6 2403634 2403704 -186875850 - MER82 DNA MER2_type 0 653 583 720 79 0 0 chr6 2403705 2403794 -186875760 - AluSq/x SINE Alu -204 109 21 555 107 19 10 chr6 2406275 2406285 -186873269 + (TCTA)n Simple_repeat Simple_repeat 1 9 -95 1422 224 120 41 chr6 2406285 2406750 -186872804 + MLT1D LTR MaLR 1 502 -3 555 107 19 10 chr6 2406750 2406842 -186872712 + (TCTA)n Simple_repeat Simple_repeat 9 104 0 2061 125 37 28 chr6 2406844 2407171 -186872383 + THE1B LTR MaLR 1 330 -34 396 271 13 12 chr6 2408401 2408720 -186870834 + (CA)n Simple_repeat Simple_repeat 1 319 0 257 251 0 123 chr6 2408900 2409071 -186870483 + MLT1K LTR MaLR 277 426 -162 211 200 0 0 chr6 2409085 2409120 -186870434 + polypurine Low_complexity Low_complexity 2 36 0 310 260 20 30 chr6 2409149 2409249 -186870305 + MLT1K LTR MaLR 472 570 -18 379 227 85 102 chr6 2409453 2409629 -186869925 - L2 LINE L2 -2 3311 3139 519 234 65 13 chr6 2409631 2409785 -186869769 + L1M4 LINE L1 5604 5765 -419 779 101 8 39 chr6 2410430 2410559 -186868995 - L1PA8 LINE L1 -1 6171 6047 190 270 90 45 chr6 2410656 2410767 -186868787 + L2 LINE L2 2928 3043 -229 313 294 87 0 chr6 2411255 2411381 -186868173 + L2 LINE L2 3136 3272 0 1954 141 77 0 chr6 2412274 2412587 -186866967 - MER1B DNA MER1_type 0 337 1 537 214 151 13 chr6 2412716 2412875 -186866679 + MER5A DNA MER1_type 4 184 -5 394 278 51 40 chr6 2412924 2413100 -186866454 + MIR SINE MIR 49 226 -36 277 293 281 0 chr6 2414904 2415071 -186864483 - MIR SINE MIR 0 262 49 243 259 214 0 chr6 2416173 2416304 -186863250 + MIR SINE MIR 48 206 -56 312 241 50 78 chr6 2417404 2417545 -186862009 - L2 LINE L2 0 3272 3136 332 310 120 0 chr6 2418308 2418408 -186861146 + MER81 DNA DNA 1 112 -2 252 288 91 0 chr6 2418428 2418560 -186860994 - MIR SINE MIR -62 200 57 1184 178 45 29 chr6 2418588 2418830 -186860724 - MLT1F1 LTR MaLR 0 567 322 15336 122 37 10 chr6 2419031 2419792 -186859762 + Tigger1 DNA MER2_type 1 740 -1678 2323 156 62 5 chr6 2419792 2420195 -186859359 - MSTB LTR MaLR 0 426 1 15336 122 37 10 chr6 2420195 2421786 -186857768 + Tigger1 DNA MER2_type 740 2418 0 2313 97 0 7 chr6 2421822 2422122 -186857432 + AluSx SINE Alu 1 298 -14 24 32 0 0 chr6 2422333 2422364 -186857190 + AT_rich Low_complexity Low_complexity 1 31 0 269 272 7 66 chr6 2422691 2422834 -186856720 + MIR SINE MIR 92 221 -41 205 176 0 20 chr6 2423549 2423600 -186855954 + L2 LINE L2 2228 2277 -1037 757 214 12 24 chr6 2423601 2423769 -186855785 + MER63B DNA MER1_type 2 167 -269 868 298 96 51 chr6 2423807 2424419 -186855135 + L2 LINE L2 2307 2953 -319 2135 119 0 0 chr6 2424419 2424712 -186854842 - AluSx SINE Alu -15 297 5 868 298 96 51 chr6 2424712 2424789 -186854765 + L2 LINE L2 2953 3025 -247 793 281 30 20 chr6 2424832 2425129 -186854425 - L1M3 LINE L1 -606 5577 5275 2116 107 78 29 chr6 2425129 2425476 -186854078 - THE1B LTR MaLR 0 364 1 793 281 30 20 chr6 2425476 2425602 -186853952 - L1M3 LINE L1 -908 5275 5152 793 251 121 57 chr6 2425673 2426374 -186853180 - L1MEd LINE L1 -4722 1588 820 1431 196 31 14 chr6 2426374 2426665 -186852889 + AluJo SINE Alu 1 296 -16 793 251 121 57 chr6 2426665 2426712 -186852842 - L1MEd LINE L1 -5490 820 777 507 17 0 0 chr6 2426727 2426787 -186852767 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 300 345 84 35 chr6 2426882 2427085 -186852469 + LTR16A LTR ERVL 119 331 -119 298 282 243 24 chr6 2427257 2427313 -186852241 - L1MEd LINE L1 -5446 673 631 1230 203 93 32 chr6 2427313 2427658 -186851896 + MER47A DNA MER2_type 1 366 0 298 282 243 24 chr6 2427658 2427934 -186851620 - L1MEd LINE L1 -5488 631 268 1884 133 60 0 chr6 2428945 2429230 -186850324 - AluJb SINE Alu -10 302 1 872 144 8 0 chr6 2429232 2429364 -186850190 - AluJb SINE Alu -179 133 1 232 328 62 25 chr6 2429369 2429723 -186849831 - L2 LINE L2 -1611 1703 1337 616 224 92 6 chr6 2430259 2430433 -186849121 - MER5A DNA MER1_type 0 189 1 2255 106 0 0 chr6 2430788 2431080 -186848474 - AluSx SINE Alu -16 296 5 23 0 0 0 chr6 2431709 2431732 -186847822 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr6 2432488 2432530 -186847024 + AT_rich Low_complexity Low_complexity 1 42 0 240 256 8 29 chr6 2432656 2432744 -186846810 + CT-rich Low_complexity Low_complexity 1 86 0 1800 166 10 3 chr6 2433108 2433403 -186846151 - AluJo SINE Alu -13 299 3 760 294 35 8 chr6 2435231 2435486 -186844068 - MIR SINE MIR 0 262 1 907 170 18 8 chr6 2435548 2435948 -186843606 + CT-rich Low_complexity Low_complexity 1 404 0 1008 165 62 0 chr6 2435959 2436135 -186843419 - AluJo SINE Alu -4 308 122 303 274 12 0 chr6 2436137 2436221 -186843333 + L1MC4 LINE L1 6608 6692 -1350 1499 165 44 0 chr6 2436231 2436480 -186843074 - AluJo SINE Alu -30 282 23 578 217 140 27 chr6 2436583 2436819 -186842735 + MLT1C LTR MaLR 147 425 -80 939 183 50 72 chr6 2436924 2437203 -186842351 - Charlie1 DNA MER1_type 0 2761 2489 42100 27 17 1 chr6 2437203 2443232 -186836322 - L1HS LINE L1 -3 6152 1 1402 203 34 6 chr6 2443235 2443585 -186835969 - Charlie1 DNA MER1_type -257 2504 2145 4763 171 21 19 chr6 2443595 2443638 -186835916 - L1MB3 LINE L1 -2 6181 6140 2144 94 17 3 chr6 2443638 2443935 -186835619 + AluSx SINE Alu 2 302 -10 4763 171 21 19 chr6 2443935 2444278 -186835276 - L1MB3 LINE L1 -43 6140 5799 297 51 0 0 chr6 2444278 2444317 -186835237 + (TG)n Simple_repeat Simple_repeat 2 40 0 4763 171 21 19 chr6 2444317 2445081 -186834473 - L1MB3 LINE L1 -384 5799 5027 1008 211 33 31 chr6 2445086 2445438 -186834116 - MLT1E LTR MaLR -124 453 9 260 153 143 102 chr6 2445445 2445543 -186834011 - L2 LINE L2 -597 2717 2616 257 279 44 0 chr6 2445576 2445644 -186833910 - L2 LINE L2 -9 3304 3234 2090 135 3 22 chr6 2445676 2446040 -186833514 - L1MA5 LINE L1 -6 6294 5938 924 157 7 0 chr6 2446042 2446195 -186833359 + L1MA5 LINE L1 5787 5940 -360 239 271 78 47 chr6 2447438 2447567 -186831987 - MER5A DNA MER1_type -2 187 55 * 240 310 70 10 chr6 2447468 2447568 -186831986 + MER5A DNA MER1_type 41 146 -43 2356 270 110 14 chr6 2447613 2448679 -186830875 - L2 LINE L2 -24 3289 1917 859 277 100 0 chr6 2448684 2448984 -186830570 - L2 LINE L2 -1622 1692 1363 584 330 75 4 chr6 2448991 2449230 -186830324 - L2 LINE L2 -2194 1120 865 213 39 0 0 chr6 2451047 2451073 -186828481 + (TA)n Simple_repeat Simple_repeat 2 27 0 1247 266 110 2 chr6 2451370 2451814 -186827740 + L1ME3 LINE L1 5659 6150 -12 185 315 37 0 chr6 2451846 2451900 -186827654 - L2 LINE L2 -88 3184 3129 323 312 46 107 chr6 2452118 2452641 -186826913 + L2 LINE L2 1915 2405 -909 361 266 243 54 chr6 2452957 2453435 -186826119 - MLT1K LTR MaLR -18 570 3 246 335 32 11 chr6 2454025 2454145 -186825409 + MIR3 SINE MIR 30 154 -54 357 273 41 67 chr6 2457472 2457666 -186821888 + L1MC5 LINE L1 7736 7924 -37 261 324 0 38 chr6 2457971 2458076 -186821478 + CT-rich Low_complexity Low_complexity 5 105 0 781 358 154 2 chr6 2458464 2458930 -186820624 + L3 LINE CR1 703 1239 -338 901 256 87 73 chr6 2459500 2459949 -186819605 + L1MDb LINE L1 782 1236 -5173 399 234 78 0 chr6 2459950 2460091 -186819463 + MER63 DNA MER1_type 911 1062 0 560 173 105 65 chr6 2462091 2462309 -186817245 + MER106B DNA MER1_type 10 1059 0 1814 144 47 3 chr6 2462464 2462763 -186816791 - AluSx SINE Alu 0 312 1 180 250 0 0 chr6 2463982 2464022 -186815532 + L2 LINE L2 3153 3192 -80 2392 65 0 0 chr6 2464050 2464344 -186815210 + AluY SINE Alu 1 294 -17 388 35 0 188 chr6 2464367 2464452 -186815102 - MADE1 DNA Mariner 0 80 12 889 250 100 109 chr6 2464830 2465263 -186814291 + MER110 LTR ERV1 80 484 -3 539 41 27 0 chr6 2465383 2465456 -186814098 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 21 0 0 0 chr6 2465470 2465491 -186814063 + AT_rich Low_complexity Low_complexity 1 21 0 1651 167 32 3 chr6 2465502 2465784 -186813770 + AluJb SINE Alu 1 290 -22 4721 148 14 3 chr6 2465864 2466640 -186812914 - L1MA7 LINE L1 0 6291 5507 998 186 5 0 chr6 2467353 2467541 -186812013 + MER53 DNA DNA 1 189 0 267 329 0 0 chr6 2468983 2469056 -186810498 - MIR3 SINE MIR -17 191 119 562 279 129 49 chr6 2471075 2471501 -186808053 - L2 LINE L2 0 3272 2813 464 135 0 0 chr6 2472053 2472127 -186807427 - L1MB8 LINE L1 -11 6167 6094 2110 106 7 3 chr6 2472162 2472455 -186807099 - AluSx SINE Alu -18 294 1 4362 178 21 22 chr6 2472457 2473429 -186806125 - L1MB4 LINE L1 -42 6138 5170 942 228 61 58 chr6 2474222 2474634 -186804920 - L1MC5 LINE L1 -30 7931 7519 26 0 0 0 chr6 2475336 2475362 -186804192 + AT_rich Low_complexity Low_complexity 1 26 0 1735 173 38 20 chr6 2476109 2476456 -186803098 - L1MC1 LINE L1 0 6333 5981 1243 157 175 92 chr6 2476458 2476622 -186802932 - LTR54B LTR ERV1 -2 496 347 2231 97 7 0 chr6 2476622 2476930 -186802624 - AluSq SINE Alu -3 310 1 1243 157 175 92 chr6 2476930 2477223 -186802331 - LTR54B LTR ERV1 -151 347 1 213 39 0 0 chr6 2477450 2477476 -186802078 + (A)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr6 2477635 2477657 -186801897 + AT_rich Low_complexity Low_complexity 1 22 0 221 116 0 23 chr6 2478043 2478086 -186801468 + (GGAGAA)n Simple_repeat Simple_repeat 1 42 0 344 309 73 0 chr6 2479257 2479393 -186800161 + MER117 DNA MER1_type 4 149 -48 1744 100 61 0 chr6 2480980 2481241 -186798313 + AluSg SINE Alu 1 277 -33 198 0 0 0 chr6 2481243 2481265 -186798289 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 564 286 128 30 chr6 2482423 2482828 -186796726 + LTR16B LTR ERVL 20 464 0 2081 109 0 3 chr6 2483128 2483422 -186796132 - AluSc SINE Alu -16 293 1 310 268 116 27 chr6 2483770 2483882 -186795672 - MIR SINE MIR -37 225 104 1900 99 70 0 chr6 2484605 2484889 -186794665 - AluSx SINE Alu -8 304 1 2251 80 3 0 chr6 2485171 2485460 -186794094 - AluSp SINE Alu -23 290 1 424 263 67 59 chr6 2485566 2485836 -186793718 - L1MC1 LINE L1 -2036 5772 5501 1991 202 74 41 chr6 2486028 2486567 -186792987 - MER74A LTR ERVL 0 558 2 363 199 22 33 chr6 2487665 2487846 -186791708 + GA-rich Low_complexity Low_complexity 1 179 0 748 254 33 8 chr6 2487949 2488189 -186791365 + MLT1C LTR MaLR 210 455 -12 1424 289 74 9 chr6 2488932 2489458 -186790096 + L1ME3A LINE L1 5545 6104 -66 279 347 76 0 chr6 2489859 2490003 -186789551 - LTR33 LTR ERVL -193 328 174 1954 141 0 7 chr6 2490444 2490741 -186788813 + AluJo SINE Alu 4 298 -14 2120 126 0 10 chr6 2491423 2491732 -186787822 + AluSc SINE Alu 1 306 -3 199 318 45 0 chr6 2494709 2494797 -186784757 + MIR SINE MIR 87 178 -84 374 294 35 0 chr6 2495899 2496042 -186783512 - MIR SINE MIR -67 195 48 917 202 54 9 chr6 2496057 2496280 -186783274 + MER58 DNA MER1_type 2 234 -107 402 177 0 0 chr6 2496280 2496342 -186783212 + MER58 DNA MER1_type 2346 2407 -13 712 195 50 6 chr6 2496366 2496525 -186783029 - MER5A DNA MER1_type -22 167 2 4185 160 69 90 chr6 2498163 2498486 -186781068 - LTR12 LTR ERV1 0 826 498 1558 117 4 9 chr6 2498486 2498717 -186780837 + AluY SINE Alu 81 310 -1 4185 160 69 90 chr6 2498717 2499237 -186780317 - LTR12 LTR ERV1 -328 498 1 2137 125 7 0 chr6 2499472 2499777 -186779777 + AluSx SINE Alu 1 307 -5 265 311 22 11 chr6 2500269 2500359 -186779195 - MIR3 SINE MIR -21 187 97 1777 203 68 6 chr6 2500421 2500903 -186778651 - MER69 DNA AcHobo -2 2524 2010 874 261 89 7 chr6 2500901 2501181 -186778373 - MER69 DNA AcHobo -658 568 266 * 3442 182 37 17 chr6 2501981 2502628 -186776926 - MER21B LTR ERV1 -1 862 203 42 57 0 0 chr6 2502822 2502892 -186776662 + GC_rich Low_complexity Low_complexity 1 70 0 342 0 0 0 chr6 2503572 2503610 -186775944 + (A)n Simple_repeat Simple_repeat 1 38 0 297 219 0 0 chr6 2506222 2506295 -186773259 + (CA)n Simple_repeat Simple_repeat 1 73 0 2155 109 33 3 chr6 2506489 2506792 -186772762 - AluSx SINE Alu 0 312 1 670 285 45 5 chr6 2506893 2507093 -186772461 + MER63A DNA MER1_type 2 209 -1 190 227 0 23 chr6 2507474 2507518 -186772036 - L3b LINE CR1 -13 1570 1528 1057 244 238 18 chr6 2507964 2508522 -186771032 - L2 LINE L2 -752 2562 1882 465 246 109 58 chr6 2508857 2509186 -186770368 - L1ME4a LINE L1 -6 6115 5770 565 293 63 10 chr6 2509444 2509649 -186769905 + MIR SINE MIR 5 220 -42 228 67 0 0 chr6 2509700 2509730 -186769824 + (TC)n Simple_repeat Simple_repeat 1 30 0 249 57 0 0 chr6 2509735 2509770 -186769784 + (CA)n Simple_repeat Simple_repeat 1 35 0 1772 180 31 0 chr6 2509770 2510058 -186769496 - AluJb SINE Alu -15 297 1 1964 173 17 0 chr6 2510799 2511151 -186768403 + MLT1B LTR MaLR 9 366 -24 4054 164 37 8 chr6 2511232 2511934 -186767620 + MER72 LTR ERV1 1 722 0 724 219 77 20 chr6 2512344 2512459 -186767095 + MER3 DNA MER1_type 3 135 -74 2309 144 25 0 chr6 2512459 2512814 -186766740 - THE1B LTR MaLR 0 364 1 724 219 77 20 chr6 2512814 2512894 -186766660 + MER3 DNA MER1_type 135 209 0 2279 117 0 0 chr6 2513505 2513814 -186765740 + AluSx SINE Alu 1 309 -3 337 168 262 40 chr6 2513848 2513997 -186765557 - MER53 DNA DNA -3 186 5 223 295 64 0 chr6 2514284 2514362 -186765192 + L2 LINE L2 3196 3278 -35 2520 198 30 85 chr6 2516177 2516908 -186762646 + LTR8 LTR ERV1 1 691 0 237 314 38 60 chr6 2516953 2517138 -186762416 + L2 LINE L2 2926 3106 -166 219 330 0 0 chr6 2517204 2517292 -186762262 + (CATA)n Simple_repeat Simple_repeat 1 88 0 189 189 0 0 chr6 2517355 2517392 -186762162 + L2 LINE L2 3274 3310 -3 333 205 219 53 chr6 2518778 2518929 -186760625 + MER5A DNA MER1_type 14 189 0 2172 129 0 0 chr6 2519421 2519723 -186759831 + AluSx SINE Alu 5 306 -6 409 91 0 0 chr6 2519723 2519778 -186759776 + L1PA13 LINE L1 5777 5831 -332 685 211 0 0 chr6 2520086 2520225 -186759329 - FLAM_A SINE Alu 0 142 4 250 297 152 51 chr6 2520289 2520389 -186759165 - L1ME4a LINE L1 -21 6100 6012 1878 134 43 7 chr6 2520389 2520688 -186758866 - AluSq SINE Alu -3 310 1 250 297 152 51 chr6 2520688 2520843 -186758711 - L1ME4a LINE L1 -109 6012 5819 392 220 22 0 chr6 2520899 2520990 -186758564 - L1ME4a LINE L1 -393 5728 5636 2268 90 7 3 chr6 2521507 2521797 -186757757 + AluSg SINE Alu 1 291 -19 22 35 0 0 chr6 2523288 2523317 -186756237 + AT_rich Low_complexity Low_complexity 1 29 0 270 0 0 0 chr6 2523389 2523419 -186756135 + (T)n Simple_repeat Simple_repeat 1 30 0 2016 120 0 24 chr6 2524065 2524356 -186755198 - AluSx SINE Alu -28 284 1 250 304 60 60 chr6 2524367 2524535 -186755019 - MER5B DNA MER1_type -7 171 4 742 164 70 0 chr6 2525014 2525142 -186754412 + FRAM SINE Alu 22 158 -18 306 313 21 0 chr6 2525463 2525559 -186753995 + (TG)n Simple_repeat Simple_repeat 1 98 0 376 262 170 7 chr6 2525816 2525957 -186753597 + MIR SINE MIR 88 251 -11 866 211 78 0 chr6 2528401 2528605 -186750949 + MER58A DNA MER1_type 1 220 -4 291 229 97 69 chr6 2530194 2530369 -186749185 + MER117 DNA MER1_type 1 180 -17 234 301 87 10 chr6 2532130 2532233 -186747321 - L2 LINE L2 0 3272 3162 392 194 14 0 chr6 2532489 2532561 -186746993 + MER81 DNA DNA 22 94 -20 360 316 65 26 chr6 2532666 2532755 -186746799 - L2 LINE L2 -470 2844 2745 2021 122 40 3 chr6 2532755 2533051 -186746503 - AluSc SINE Alu -2 307 1 360 316 65 26 chr6 2533051 2533116 -186746438 - L2 LINE L2 -569 2745 2684 231 119 24 24 chr6 2533189 2533231 -186746323 + MER63 DNA MER1_type 3 44 -392 2480 154 78 83 chr6 2533235 2533798 -186745756 - LTR31 LTR ERV1 0 619 60 869 86 39 17 chr6 2534193 2534426 -186745128 + (TAGA)n Simple_repeat Simple_repeat 2 239 0 2063 163 113 44 chr6 2534568 2535089 -186744465 - LTR31 LTR ERV1 -3 616 60 839 56 39 39 chr6 2535505 2535685 -186743869 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 7236 162 21 41 chr6 2535847 2537248 -186742306 - L1MC3 LINE L1 -1 7784 6411 1063 104 0 0 chr6 2537248 2537383 -186742171 - AluSq/x SINE Alu -178 135 1 231 211 105 0 chr6 2537384 2537441 -186742113 - MLT1D LTR MaLR -415 90 28 4154 264 39 37 chr6 2537516 2538061 -186741493 - L1M4 LINE L1 -1572 4574 4032 1800 135 8 0 chr6 2538061 2538327 -186741227 + AluSq SINE Alu 1 268 -45 4154 264 39 37 chr6 2538327 2539430 -186740124 - L1M4 LINE L1 -2114 4032 2922 248 316 31 10 chr6 2540512 2540610 -186738944 - L2 LINE L2 -201 3071 2972 300 53 0 0 chr6 2540826 2540864 -186738690 + (TG)n Simple_repeat Simple_repeat 1 38 0 315 172 0 115 chr6 2541012 2541099 -186738455 - Tigger5 DNA MER2_type 0 2323 2247 277 129 233 5 chr6 2541100 2541214 -186738340 - Tigger5 DNA MER2_type -2130 193 1 41 48 0 0 chr6 2541598 2541660 -186737894 + AT_rich Low_complexity Low_complexity 1 62 0 801 173 0 8 chr6 2541664 2541797 -186737757 + AluJo/FLAM SINE Alu 2 133 -179 1364 179 3 70 chr6 2541799 2541893 -186737661 + AluJo SINE Alu 1 100 -212 2042 152 123 5 chr6 2541893 2542274 -186737280 - MSTA LTR MaLR 0 428 3 1364 179 3 70 chr6 2542274 2542480 -186737074 + AluJo SINE Alu 100 281 -31 1532 159 9 83 chr6 2542961 2543288 -186736266 - AluJo SINE Alu -9 303 1 1696 102 9 0 chr6 2543859 2544085 -186735469 - AluSc SINE Alu -2 307 80 713 140 0 129 chr6 2544348 2544383 -186735171 - L1MB3 LINE L1 -15 6168 6130 880 204 0 6 chr6 2544383 2544540 -186735014 - FRAM SINE Alu -9 157 2 713 140 0 129 chr6 2544540 2544682 -186734872 - L1MB3 LINE L1 -53 6130 6014 354 243 32 32 chr6 2546206 2546334 -186733220 - MIR SINE MIR -55 153 43 225 235 0 42 chr6 2547448 2547614 -186731940 + C-rich Low_complexity Low_complexity 3 161 0 698 206 52 123 chr6 2548293 2548341 -186731213 + L1ME2 LINE L1 5831 5881 -283 840 135 38 0 chr6 2548341 2548474 -186731080 + L1MA2 LINE L1 6167 6304 0 698 206 52 123 chr6 2548474 2548774 -186730780 + L1ME2 LINE L1 5881 6154 -10 403 273 22 43 chr6 2549418 2549557 -186729997 + MLT1J LTR MaLR 226 361 -150 245 216 80 23 chr6 2549586 2549674 -186729880 + MLT1L LTR MaLR 521 613 -2 2421 71 0 3 chr6 2549902 2550199 -186729355 - AluY SINE Alu -15 296 1 531 153 0 0 chr6 2551843 2551928 -186727626 + FLAM SINE Alu 40 124 -19 611 174 0 0 chr6 2555374 2555483 -186724071 - L1MA9 LINE L1 0 6312 6204 2405 87 3 0 chr6 2555880 2556178 -186723376 - AluSp SINE Alu -14 299 1 417 262 72 51 chr6 2557331 2557568 -186721986 + L1M4 LINE L1 3735 3976 -2170 269 324 22 0 chr6 2557585 2557724 -186721830 + L1M4 LINE L1 4060 4201 -1945 1047 189 0 0 chr6 2557858 2558033 -186721521 + FAM SINE Alu 1 175 0 277 269 9 56 chr6 2558482 2558590 -186720964 - LTR33 LTR ERVL -418 103 1 23 33 0 0 chr6 2558820 2558850 -186720704 + AT_rich Low_complexity Low_complexity 1 30 0 1062 185 30 5 chr6 2559128 2559328 -186720226 + MER58B DNA MER1_type 129 333 -8 313 263 23 83 chr6 2560815 2560948 -186718606 - MIR SINE MIR -80 182 58 630 269 42 0 chr6 2562363 2562530 -186717024 - MIR SINE MIR -48 214 41 2166 115 0 13 chr6 2562838 2563142 -186716412 + AluSx SINE Alu 1 300 -12 227 350 10 19 chr6 2564835 2564938 -186714616 - MIR SINE MIR -156 106 5 476 229 122 64 chr6 2565196 2565523 -186714031 + L1ME4a LINE L1 5770 6115 -6 836 287 130 5 chr6 2565858 2566266 -186713288 + L2 LINE L2 1882 2340 -974 318 50 0 0 chr6 2566272 2566312 -186713242 + (CA)n Simple_repeat Simple_repeat 1 40 0 370 115 0 0 chr6 2566325 2566377 -186713177 + MER58B DNA MER1_type 278 329 -12 2431 271 184 20 chr6 2566542 2568067 -186711487 - L2 LINE L2 0 3313 1530 254 208 292 10 chr6 2568067 2568163 -186711391 + MER34 LTR ERV1 1 123 -419 278 146 110 98 chr6 2568235 2568317 -186711237 + MER39 LTR ERV1 380 462 -245 1682 113 4 0 chr6 2568317 2568546 -186711008 + AluSg/x SINE Alu 66 295 -15 919 177 17 17 chr6 2568616 2568797 -186710757 - L1MB3 LINE L1 0 6183 6003 491 224 26 0 chr6 2569929 2570045 -186709509 - MIR SINE MIR 0 262 144 1309 187 85 40 chr6 2570076 2570402 -186709152 + L1MB7 LINE L1 5833 6174 -10 1131 256 155 5 chr6 2570825 2571250 -186708304 + LTR50 LTR ERVL 31 519 -276 1722 175 75 24 chr6 2571270 2571642 -186707912 + MLT1C LTR MaLR 3 393 -74 890 132 14 7 chr6 2571678 2571822 -186707732 - L1MA9 LINE L1 0 6312 6168 324 0 0 0 chr6 2571822 2571858 -186707696 + (TG)n Simple_repeat Simple_repeat 2 37 0 799 155 20 37 chr6 2571972 2572168 -186707386 + L1M1 LINE L1 5218 5418 -766 279 109 0 0 chr6 2572183 2572229 -186707325 + L1M1 LINE L1 5388 5433 -867 374 280 98 8 chr6 2572270 2572402 -186707152 - MIR SINE MIR -118 144 1 823 303 0 5 chr6 2572569 2572787 -186706767 - LTR16B LTR ERVL -214 250 34 1136 189 78 66 chr6 2572927 2573347 -186706207 + MLT2B1 LTR ERVL 1 414 0 554 311 51 26 chr6 2573687 2574043 -186705511 - HERV16 LTR ERVL -619 4563 4010 801 273 104 30 chr6 2574356 2575078 -186704476 - HERV16 LTR ERVL -1347 3649 3135 1331 298 74 32 chr6 2575165 2575729 -186703825 - HERV16 LTR ERVL -2059 2937 2417 239 333 11 0 chr6 2576743 2576833 -186702721 - MIR3 SINE MIR -3 205 115 278 138 108 0 chr6 2577053 2577118 -186702436 + MIR3 SINE MIR 135 206 -2 1818 255 82 41 chr6 2577624 2577946 -186701608 + L1MC4a LINE L1 5281 5588 -2220 2317 86 3 7 chr6 2577946 2578248 -186701306 + AluY SINE Alu 1 301 -10 1818 255 82 41 chr6 2578248 2578646 -186700908 + L1MC4a LINE L1 5588 6044 -1764 2030 134 82 26 chr6 2578646 2578997 -186700557 - L1PA16 LINE L1 -8 6158 5783 2101 150 0 0 chr6 2578997 2579304 -186700250 - AluSx SINE Alu -5 307 1 2030 134 82 26 chr6 2579304 2579332 -186700222 - L1PA16 LINE L1 -383 5783 5758 1818 255 82 41 chr6 2579332 2579460 -186700094 + L1MC4a LINE L1 6044 6165 -1643 489 237 183 6 chr6 2579755 2579924 -186699630 + L2 LINE L2 2611 2809 -505 343 239 186 9 chr6 2579960 2580073 -186699481 + LTR41 LTR ERVL 30 162 -611 203 357 0 0 chr6 2580468 2580538 -186699016 - L3 LINE CR1 -1302 275 206 335 312 88 58 chr6 2582000 2582398 -186697156 + L1M4 LINE L1 2431 2853 -3293 2272 124 0 0 chr6 2582398 2582704 -186696850 + AluSx SINE Alu 1 306 -6 335 312 88 58 chr6 2582704 2582875 -186696679 + L1M4 LINE L1 2853 3017 -3129 333 205 219 53 chr6 2583130 2583281 -186696273 + MER5A DNA MER1_type 14 189 0 2183 111 0 0 chr6 2583773 2584061 -186695493 + AluSx SINE Alu 5 292 -20 187 347 32 11 chr6 2584243 2584338 -186695216 + L2 LINE L2 3208 3304 -9 685 211 0 0 chr6 2584780 2584921 -186694633 - FLAM_A SINE Alu 0 144 4 1104 136 65 5 chr6 2585085 2585269 -186694285 - AluSg/x SINE Alu -4 306 112 7213 216 50 27 chr6 2585370 2588073 -186691481 - L1MDa LINE L1 -2710 3830 719 2454 83 3 0 chr6 2588073 2588375 -186691179 - AluSp SINE Alu -10 303 1 7213 216 50 27 chr6 2588375 2589094 -186690460 - L1MDa LINE L1 -5821 719 18 341 215 87 132 chr6 2589321 2589586 -186689968 - L1ME4a LINE L1 -246 5875 5623 984 169 7 0 chr6 2589816 2589970 -186689584 - FRAM SINE Alu -25 151 1 736 11 21 0 chr6 2590120 2590213 -186689341 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 1189 208 186 12 chr6 2590717 2591131 -186688423 - LTR54B LTR ERV1 -10 488 3 194 241 181 0 chr6 2591906 2592022 -186687532 + L2 LINE L2 2251 2387 -927 505 287 5 37 chr6 2592722 2592910 -186686644 + MIR SINE MIR 78 259 -3 385 145 0 29 chr6 2594508 2594577 -186684977 - Tigger2 DNA MER2_type -1518 1200 1134 4713 129 93 13 chr6 2594601 2595354 -186684200 - L1MA5A LINE L1 -3 6294 5464 255 114 0 0 chr6 2595354 2595398 -186684156 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4713 129 93 13 chr6 2595398 2595497 -186684057 - L1MA5A LINE L1 -833 5464 5374 * 15846 192 57 10 chr6 2595491 2595872 -186683682 - L1PB1 LINE L1 -4 6863 6502 240 86 0 0 chr6 2595872 2595907 -186683647 + (CA)n Simple_repeat Simple_repeat 2 36 0 15846 192 57 10 chr6 2595907 2597284 -186682270 - L1PB1 LINE L1 -365 6502 5192 189 0 0 0 chr6 2597284 2597305 -186682249 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 15846 192 57 10 chr6 2597305 2602095 -186677459 - L1PB1 LINE L1 -1675 5192 6 2171 184 38 0 chr6 2602103 2602549 -186677005 - L1MA5A LINE L1 -752 5394 4932 30 0 0 0 chr6 2603474 2603504 -186676050 + AT_rich Low_complexity Low_complexity 1 30 0 340 257 23 17 chr6 2603572 2603747 -186675807 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 683 271 33 38 chr6 2603762 2604002 -186675552 + LTR16A LTR ERVL 54 292 -158 1502 321 78 10 chr6 2604125 2605416 -186674138 + HERV16 LTR ERVL 1 1421 -3575 2387 295 57 25 chr6 2605518 2605633 -186673921 + HERV16 LTR ERVL 1613 1723 -3781 2051 140 0 31 chr6 2605633 2605954 -186673600 + AluJo SINE Alu 1 311 -1 2249 111 0 0 chr6 2605956 2606245 -186673309 + AluSx SINE Alu 3 291 -21 2387 295 57 25 chr6 2606245 2607448 -186672106 + HERV16 LTR ERVL 1723 3008 -2496 1017 217 74 106 chr6 2607461 2607973 -186671581 - MLT1D LTR MaLR -1 504 5 397 309 116 52 chr6 2608039 2608618 -186670936 + HERV16 LTR ERVL 3163 3778 -1986 826 186 96 0 chr6 2608836 2609024 -186670530 - MER20 DNA MER1_type -13 206 1 538 193 88 64 chr6 2609422 2609500 -186670054 - MER45A DNA AcHobo -1403 178 103 2339 104 0 0 chr6 2609500 2609797 -186669757 + AluSx SINE Alu 11 307 -5 538 193 88 64 chr6 2609797 2609889 -186669665 - MER45A DNA AcHobo -1478 103 4 211 270 149 0 chr6 2610438 2610512 -186669042 + MIR SINE MIR 32 116 -92 396 0 0 0 chr6 2610699 2610743 -186668811 + (TG)n Simple_repeat Simple_repeat 1 44 0 1752 157 77 65 chr6 2611501 2611546 -186668008 - MLT2D LTR ERVL -3 411 368 198 0 0 0 chr6 2611546 2611568 -186667986 + (TC)n Simple_repeat Simple_repeat 2 23 0 1752 157 77 65 chr6 2611568 2611924 -186667630 - MLT2D LTR ERVL -46 368 5 398 212 179 7 chr6 2612302 2612453 -186667101 + MLT1I LTR MaLR 2 178 -231 1813 189 34 11 chr6 2612817 2613172 -186666382 + MLT1A1 LTR MaLR 1 363 -2 369 317 87 6 chr6 2613673 2613856 -186665698 + L1MC2 LINE L1 3917 4114 -2032 2284 113 0 0 chr6 2614176 2614478 -186665076 - AluSx SINE Alu -10 302 1 245 287 108 6 chr6 2614893 2615050 -186664504 + L1P LINE L1 4875 5047 -1099 840 143 0 0 chr6 2615722 2615855 -186663699 - AluSg/x SINE Alu -1 309 177 183 268 28 0 chr6 2615855 2615926 -186663628 - L2 LINE L2 -45 3227 3155 2591 50 0 0 chr6 2616082 2616382 -186663172 + AluY SINE Alu 1 300 -11 941 122 11 17 chr6 2617016 2617197 -186662357 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 306 206 0 37 chr6 2617240 2617347 -186662207 + GA-rich Low_complexity Low_complexity 2 104 0 696 296 31 57 chr6 2619706 2619939 -186659615 + L1MC2 LINE L1 5309 5535 -637 2149 103 0 0 chr6 2619939 2620212 -186659342 + AluSc SINE Alu 30 302 -7 696 296 31 57 chr6 2620212 2620338 -186659216 + L1MC2 LINE L1 5535 5663 -509 314 246 27 27 chr6 2620364 2620474 -186659080 - MLT1F1 LTR MaLR -434 133 24 673 156 14 7 chr6 2620474 2620615 -186658939 - L1MC3 LINE L1 -700 7085 6944 227 277 69 30 chr6 2620754 2620855 -186658699 - L2 LINE L2 -20 3293 3189 6289 123 66 7 chr6 2622057 2623142 -186656412 - L1MC1 LINE L1 -9 6324 5175 523 293 116 13 chr6 2623779 2623939 -186655615 - MIR SINE MIR -5 257 64 1964 151 0 23 chr6 2623939 2624244 -186655310 - AluJo SINE Alu -14 298 1 523 293 116 13 chr6 2624244 2624315 -186655239 - MIR SINE MIR -198 64 2 500 264 24 0 chr6 2624315 2624437 -186655117 + MIR SINE MIR 47 171 -91 384 161 0 62 chr6 2624586 2624667 -186654887 - MLT1D LTR MaLR 0 505 430 620 65 0 0 chr6 2624667 2624744 -186654810 - L1P2 LINE L1 -501 5653 5577 3189 42 8 0 chr6 2624744 2625125 -186654429 + L1PA7 LINE L1 5759 6143 -11 2003 230 11 45 chr6 2625153 2625622 -186653932 - MLT1D LTR MaLR -52 453 1 5099 110 7 1 chr6 2626068 2626798 -186652756 - L1PA14 LINE L1 -65 6096 5363 374 312 16 8 chr6 2627290 2627415 -186652139 - MIR3 SINE MIR -23 185 60 181 286 13 26 chr6 2627941 2628018 -186651536 + L2 LINE L2 3016 3091 -181 2318 107 3 0 chr6 2628030 2628329 -186651225 - AluSx SINE Alu -12 300 1 1948 168 16 45 chr6 2628468 2628848 -186650706 + MSTB LTR MaLR 58 426 0 335 277 188 20 chr6 2629355 2629557 -186649997 + MIR SINE MIR 17 252 -10 2178 180 31 5 chr6 2629824 2630241 -186649313 + L1MC2 LINE L1 5854 6281 -63 321 260 13 0 chr6 2630249 2630326 -186649228 - MLT1H1 LTR MaLR -468 87 10 186 133 0 0 chr6 2631600 2631630 -186647924 + (GGA)n Simple_repeat Simple_repeat 2 31 0 1415 197 93 54 chr6 2632725 2633167 -186646387 + MLT1E3 LTR MaLR 104 562 -62 700 262 11 11 chr6 2633170 2633392 -186646162 + L1PB4 LINE L1 5950 6171 0 384 184 0 71 chr6 2633399 2633497 -186646057 + MLT1E LTR MaLR 503 593 0 711 135 6 140 chr6 2633821 2633910 -186645644 - MER96B DNA MER1_type? -4 413 314 1067 141 11 6 chr6 2633910 2634087 -186645467 - L1MB3 LINE L1 -1 6182 6005 711 135 6 140 chr6 2634087 2634108 -186645446 - MER96B DNA MER1_type? -103 314 292 2211 195 39 9 chr6 2634108 2634569 -186644985 - L1MC1 LINE L1 -8 6325 5851 711 135 6 140 chr6 2634569 2634635 -186644919 - MER96B DNA MER1_type? -125 292 260 183 80 0 0 chr6 2637633 2637658 -186641896 + (T)n Simple_repeat Simple_repeat 1 25 0 601 155 26 0 chr6 2639118 2639234 -186640320 - L1MB3 LINE L1 -1 6182 6064 946 178 53 14 chr6 2640209 2640417 -186639137 + MER20 DNA MER1_type 1 216 -3 2310 108 0 13 chr6 2640946 2641253 -186638301 - AluSx SINE Alu -9 303 1 280 288 14 0 chr6 2641410 2641483 -186638071 + MER112 DNA MER1_type 179 252 -8 1640 196 46 0 chr6 2641534 2641881 -186637673 + MLT2D LTR ERVL 1 363 -51 411 163 150 94 chr6 2641969 2642129 -186637425 + MLT1C LTR MaLR 1 169 -298 350 223 122 21 chr6 2642409 2642578 -186636976 + MLT1I LTR MaLR 266 409 0 351 301 68 40 chr6 2643950 2644126 -186635428 + MIR SINE MIR 36 216 -46 228 262 117 55 chr6 2645631 2645776 -186633778 + MIR SINE MIR 33 186 -76 2145 73 0 18 chr6 2647433 2647705 -186631849 - AluSq SINE Alu -13 300 34 2810 218 64 13 chr6 2648248 2648949 -186630605 - L1MB3 LINE L1 -4 6179 5443 440 314 5 19 chr6 2649248 2649455 -186630099 + SST1 Satellite centromeric 1349 1552 -11 369 75 0 0 chr6 2649481 2649534 -186630020 + (TG)n Simple_repeat Simple_repeat 1 53 0 2302 107 0 0 chr6 2649700 2649991 -186629563 + AluSc SINE Alu 1 291 -18 1006 280 40 26 chr6 2650530 2650984 -186628570 + SST1 Satellite centromeric 1 460 -1103 672 316 51 11 chr6 2651043 2651417 -186628137 + SST1 Satellite centromeric 1161 1549 -14 303 130 0 0 chr6 2651449 2651503 -186628051 + (TG)n Simple_repeat Simple_repeat 1 54 0 258 221 16 123 chr6 2652835 2652957 -186626597 + MER5B DNA MER1_type 1 109 -69 343 266 12 0 chr6 2653428 2653601 -186625953 + (CA)n Simple_repeat Simple_repeat 2 176 0 191 250 105 0 chr6 2654629 2654705 -186624849 + MIR SINE MIR 94 177 -85 1783 172 14 0 chr6 2654726 2655023 -186624531 + AluJo SINE Alu 1 301 -11 2508 222 94 43 chr6 2655061 2655813 -186623741 + L1ME1 LINE L1 5371 6161 -5 608 323 66 10 chr6 2656524 2656812 -186622742 - LTR16C LTR ERVL -8 483 180 632 170 12 12 chr6 2658293 2658464 -186621090 + (TG)n Simple_repeat Simple_repeat 2 172 0 275 237 0 22 chr6 2658479 2658614 -186620940 + (TG)n Simple_repeat Simple_repeat 2 133 0 341 227 0 21 chr6 2658636 2658733 -186620821 + (TG)n Simple_repeat Simple_repeat 2 96 0 271 327 52 47 chr6 2659071 2659282 -186620272 + MIR SINE MIR 50 261 -1 6533 244 60 32 chr6 2659620 2661723 -186617831 + L1ME1 LINE L1 2980 5200 -966 2052 124 0 3 chr6 2661723 2662032 -186617522 + AluSx SINE Alu 1 308 0 6533 244 60 32 chr6 2662032 2663023 -186616531 + L1ME1 LINE L1 5200 6162 -4 2170 110 7 10 chr6 2663164 2663464 -186616090 + AluSg SINE Alu 1 299 -11 479 191 167 12 chr6 2663464 2663632 -186615922 + MER5C DNA MER1_type 131 324 0 5780 228 59 43 chr6 2663753 2664959 -186614595 + L1M4 LINE L1 14 1200 -5444 2294 60 6 73 chr6 2664959 2665273 -186614281 + AluY SINE Alu 1 293 -18 5780 228 59 43 chr6 2665273 2666362 -186613192 + L1M4 LINE L1 1200 2271 -4373 2318 119 0 0 chr6 2666362 2666665 -186612889 + AluSx SINE Alu 1 303 -9 5780 228 59 43 chr6 2666665 2667671 -186611883 + L1M4 LINE L1 2271 3515 -3129 408 366 40 13 chr6 2667683 2668131 -186611423 - MARNA DNA Mariner -75 511 52 26 30 0 0 chr6 2669201 2669234 -186610320 + AT_rich Low_complexity Low_complexity 1 33 0 271 325 25 0 chr6 2669997 2670117 -186609437 + MLT1-int LTR MaLR 21 143 -1228 583 285 27 16 chr6 2670152 2670408 -186609146 + MLT1-int LTR MaLR 292 550 -821 278 338 73 7 chr6 2670636 2670787 -186608767 + MLT1-int LTR MaLR 692 852 -519 1233 214 126 23 chr6 2671025 2671334 -186608220 + MLT1F LTR MaLR 13 353 -189 24 32 0 0 chr6 2672510 2672541 -186607013 + AT_rich Low_complexity Low_complexity 1 31 0 222 118 59 0 chr6 2672613 2672664 -186606890 + (TAA)n Simple_repeat Simple_repeat 2 55 0 344 231 214 0 chr6 2672835 2672952 -186606602 + MER5A DNA MER1_type 41 182 -7 374 312 139 5 chr6 2672965 2673167 -186606387 + MIR SINE MIR 16 244 -18 1922 112 45 159 chr6 2675103 2675586 -186603968 + MSTA LTR MaLR 1 428 0 230 0 33 0 chr6 2677896 2677926 -186601628 + (TG)n Simple_repeat Simple_repeat 2 32 0 1721 81 14 0 chr6 2678309 2678532 -186601022 + AluSc SINE Alu 76 301 -8 21 36 0 0 chr6 2679608 2679636 -186599918 + AT_rich Low_complexity Low_complexity 1 28 0 472 97 14 0 chr6 2680094 2680166 -186599388 - L1PA16 LINE L1 0 6166 6094 183 42 0 0 chr6 2680736 2680760 -186598794 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1924 151 10 10 chr6 2680772 2681084 -186598470 + AluJo SINE Alu 1 312 0 2309 91 0 0 chr6 2682068 2682379 -186597175 + AluSx SINE Alu 1 311 0 184 313 23 70 chr6 2682797 2682925 -186596629 + MIR SINE MIR 65 186 -76 253 279 96 0 chr6 2684823 2684927 -186594627 + MIR SINE MIR 111 224 -38 22 56 0 0 chr6 2684962 2684998 -186594556 + AT_rich Low_complexity Low_complexity 1 36 0 261 353 116 27 chr6 2685727 2686166 -186593388 - L2 LINE L2 -649 2665 2188 2032 135 3 3 chr6 2686576 2686864 -186592690 + AluSg SINE Alu 1 288 -22 24 0 0 0 chr6 2687433 2687457 -186592097 + AT_rich Low_complexity Low_complexity 1 24 0 2259 119 0 3 chr6 2687795 2688105 -186591449 + AluSg SINE Alu 1 309 -1 197 236 100 70 chr6 2688684 2688858 -186590696 + MIR SINE MIR 29 210 -52 280 325 145 0 chr6 2689159 2689276 -186590278 + L2 LINE L2 3134 3267 -5 195 339 167 11 chr6 2689667 2689853 -186589701 + MIR SINE MIR 43 257 -5 240 211 42 28 chr6 2689888 2689959 -186589595 - MIR3 SINE MIR -23 185 114 2358 69 24 0 chr6 2690696 2690986 -186588568 - AluSc SINE Alu -12 297 1 271 218 56 42 chr6 2693544 2693686 -186585868 - L1ME4a LINE L1 -3 6118 5975 387 0 0 0 chr6 2695376 2695419 -186584135 + (TG)n Simple_repeat Simple_repeat 2 44 0 2144 108 7 0 chr6 2695419 2695702 -186583852 - AluSx SINE Alu -27 285 1 3011 159 42 2 chr6 2695904 2696431 -186583123 - MER44D DNA MER2_type 0 605 3 1256 218 73 30 chr6 2696514 2696844 -186582710 - MER2 DNA MER2_type 0 344 1 539 219 19 129 chr6 2697699 2697773 -186581781 + MER5A DNA MER1_type 1 82 -107 2183 97 26 23 chr6 2697773 2698082 -186581472 + AluSg SINE Alu 1 310 0 539 219 19 129 chr6 2698082 2698217 -186581337 + MER5A DNA MER1_type 82 187 -2 385 282 33 6 chr6 2698704 2698870 -186580684 + ERVL LTR ERVL 2379 2553 -2934 682 304 53 30 chr6 2699083 2699386 -186580168 + ERVL LTR ERVL 2805 3114 -2540 2468 87 3 0 chr6 2700032 2700343 -186579211 - AluSx SINE Alu 0 312 1 221 300 0 0 chr6 2701791 2701851 -186577703 - L2 LINE L2 -3 3310 3251 2581 42 3 7 chr6 2702808 2703114 -186576440 - AluY SINE Alu -6 305 1 896 182 67 34 chr6 2704887 2705096 -186574458 - MER20 DNA MER1_type -2 217 2 2271 109 0 3 chr6 2705741 2706043 -186573511 - AluSq SINE Alu -12 301 1 192 246 35 0 chr6 2706118 2706175 -186573379 + L3 LINE CR1 667 725 -852 970 88 0 67 chr6 2706476 2706669 -186572885 + (TGG)n Simple_repeat Simple_repeat 1 180 0 681 177 0 0 chr6 2706783 2706930 -186572624 + (TGG)n Simple_repeat Simple_repeat 1 147 0 541 253 164 9 chr6 2706930 2707155 -186572399 - MIR SINE MIR -2 260 1 244 323 31 0 chr6 2708476 2708572 -186570982 + Charlie7 DNA MER1_type 5 103 -2509 1355 201 118 54 chr6 2708576 2708925 -186570629 + MLT1A1 LTR MaLR 4 365 0 21 36 0 0 chr6 2709006 2709034 -186570520 + AT_rich Low_complexity Low_complexity 1 28 0 2120 114 4 0 chr6 2709038 2709353 -186570201 + AluSg SINE Alu 1 316 0 290 200 111 11 chr6 2709370 2709460 -186570094 + Charlie7 DNA MER1_type 2514 2612 0 22 35 0 0 chr6 2711466 2711495 -186568059 + AT_rich Low_complexity Low_complexity 1 29 0 2256 101 0 25 chr6 2711538 2711855 -186567699 - AluSg1 SINE Alu 0 309 1 346 261 23 46 chr6 2712525 2712655 -186566899 - MER5B DNA MER1_type -30 148 22 295 272 154 49 chr6 2713961 2714123 -186565431 + MER5A DNA MER1_type 11 189 0 1491 177 12 50 chr6 2714733 2715055 -186564499 + L1MA7 LINE L1 5981 6290 -1 27 49 0 0 chr6 2715549 2715590 -186563964 + AT_rich Low_complexity Low_complexity 1 41 0 366 298 32 16 chr6 2715737 2715861 -186563693 - MER5A DNA MER1_type -57 132 7 2367 70 0 0 chr6 2715921 2716208 -186563346 - AluSc SINE Alu -3 306 20 201 256 0 0 chr6 2717912 2717955 -186561599 + L3b LINE CR1 1289 1331 -252 906 150 0 6 chr6 2718638 2718798 -186560756 + L1MA10 LINE L1 6169 6327 -7 22 0 0 0 chr6 2720368 2720390 -186559164 + AT_rich Low_complexity Low_complexity 1 22 0 27 73 0 0 chr6 2722207 2722262 -186557292 + AT_rich Low_complexity Low_complexity 1 55 0 2822 145 43 27 chr6 2722545 2723034 -186556520 + LOR1a LTR ERV1 1 497 0 383 296 173 14 chr6 2723410 2723630 -186555924 - L3 LINE CR1 -991 586 332 348 287 75 37 chr6 2725137 2725325 -186554229 + MIR SINE MIR 18 212 -50 2217 108 3 13 chr6 2725349 2725663 -186553891 + AluSp SINE Alu 3 313 0 1024 191 32 0 chr6 2726186 2726375 -186553179 + L1MB3 LINE L1 5418 5612 -559 354 169 56 134 chr6 2726421 2726563 -186552991 + MER41A LTR ERV1 174 304 -250 * 948 158 161 110 chr6 2726539 2726831 -186552723 + MER66A LTR ERV1 171 477 -1 3265 124 41 30 chr6 2726831 2727241 -186552313 + L1MB3 LINE L1 5607 6026 -157 2171 110 17 0 chr6 2727241 2727533 -186552021 + AluSp SINE Alu 1 297 -16 3265 124 41 30 chr6 2727533 2727686 -186551868 + L1MB3 LINE L1 6026 6176 -7 849 224 47 0 chr6 2728955 2729147 -186550407 + MIR SINE MIR 47 247 -15 256 276 90 35 chr6 2729220 2729365 -186550189 - L2 LINE L2 -210 3062 2910 353 293 102 0 chr6 2729894 2730051 -186549503 - MIR SINE MIR -70 192 20 2429 91 7 0 chr6 2730157 2730466 -186549088 + AluSp SINE Alu 1 311 -2 234 203 17 17 chr6 2730589 2730648 -186548906 + MLT1L LTR MaLR 11 69 -546 310 274 85 9 chr6 2730752 2730858 -186548696 + MLT1J LTR MaLR 224 337 -174 1123 101 0 0 chr6 2732114 2732253 -186547301 + AluSq/x SINE Alu 1 139 -174 380 250 125 0 chr6 2732253 2732349 -186547205 - MER5B DNA MER1_type -70 108 1 2432 71 0 3 chr6 2732381 2732678 -186546876 + AluSc SINE Alu 1 296 -13 1396 225 84 28 chr6 2732680 2732766 -186546788 + HAL1 LINE L1 887 967 -1540 533 114 13 0 chr6 2732766 2732845 -186546709 - MADE1 DNA Mariner 0 80 1 1396 225 84 28 chr6 2732845 2733139 -186546415 + HAL1 LINE L1 967 1305 -1202 2250 103 0 0 chr6 2733139 2733451 -186546103 + AluSg SINE Alu 1 312 0 1396 225 84 28 chr6 2733451 2733570 -186545984 + HAL1 LINE L1 1305 1416 -1091 481 216 22 36 chr6 2733998 2734137 -186545417 + HAL1 LINE L1 1405 1541 -966 2067 253 50 43 chr6 2734143 2734771 -186544783 + HAL1 LINE L1 1597 2234 -273 396 0 0 0 chr6 2734771 2734815 -186544739 + (TG)n Simple_repeat Simple_repeat 2 45 0 2067 253 50 43 chr6 2734815 2735091 -186544463 + HAL1 LINE L1 2234 2507 0 1872 159 3 7 chr6 2735270 2735571 -186543983 + AluJb SINE Alu 3 302 -10 243 0 0 0 chr6 2736118 2736145 -186543409 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2193 111 0 3 chr6 2736148 2736436 -186543118 - AluSx SINE Alu -25 287 1 2018 110 0 0 chr6 2737160 2737424 -186542130 + AluSx SINE Alu 34 297 -15 1635 186 0 54 chr6 2737434 2737751 -186541803 + AluJo SINE Alu 1 300 -12 905 134 12 0 chr6 2737760 2737931 -186541623 + GA-rich Low_complexity Low_complexity 4 176 0 2564 59 3 0 chr6 2738864 2739168 -186540386 - AluSq SINE Alu -6 307 3 2354 70 0 3 chr6 2739941 2740226 -186539328 + AluSc SINE Alu 17 300 -9 422 269 39 0 chr6 2740268 2740398 -186539156 - MIR SINE MIR -70 192 58 240 338 84 38 chr6 2743749 2743962 -186535592 + L2 LINE L2 2985 3207 -65 181 303 66 25 chr6 2744475 2744597 -186534957 - MIR SINE MIR -5 257 131 229 297 43 29 chr6 2746048 2746186 -186533368 - MER5A DNA MER1_type -24 165 26 240 240 30 0 chr6 2746858 2746958 -186532596 + (TA)n Simple_repeat Simple_repeat 2 104 0 287 218 69 20 chr6 2747136 2747237 -186532317 - MER5A DNA MER1_type -80 109 4 429 294 69 25 chr6 2748149 2748309 -186531245 - MIR SINE MIR -70 192 26 1194 107 0 0 chr6 2748526 2748685 -186530869 - AluSg/x SINE Alu -25 285 127 2278 76 0 0 chr6 2749309 2749597 -186529957 + AluSc SINE Alu 19 306 -3 226 283 133 26 chr6 2750246 2750359 -186529195 - MIR SINE MIR -97 165 41 1037 157 6 0 chr6 2751078 2751244 -186528310 + L1MC1 LINE L1 6055 6221 -112 276 299 11 0 chr6 2751343 2751430 -186528124 + MIR SINE MIR 78 165 -97 424 143 0 0 chr6 2751431 2751494 -186528060 + AluS SINE Alu 2 64 -245 256 200 210 10 chr6 2752357 2752457 -186527097 + MIR SINE MIR 50 169 -93 266 265 61 41 chr6 2752802 2752949 -186526605 + LTR16C LTR ERVL 332 481 -10 226 229 96 12 chr6 2753365 2753448 -186526106 - MER113 DNA MER1_type? -427 94 5 4738 28 0 0 chr6 2754599 2755139 -186524415 + L1PA3 LINE L1 5615 6154 -1 626 176 71 80 chr6 2755208 2755446 -186524108 + MER106A DNA MER1_type 1 236 0 1869 153 7 7 chr6 2757901 2758208 -186521346 + AluJb SINE Alu 1 307 -5 2340 92 0 49 chr6 2758229 2758555 -186520999 + AluSg SINE Alu 1 310 0 1761 149 3 34 chr6 2759606 2759901 -186519653 - AluJo SINE Alu -14 298 13 211 333 0 12 chr6 2760740 2760821 -186518733 - MIR SINE MIR -8 254 175 1238 174 26 15 chr6 2764454 2764718 -186514836 - L1MC3 LINE L1 0 7785 7519 777 259 117 0 chr6 2764718 2764992 -186514562 - L2 LINE L2 -793 2521 2216 3408 192 57 56 chr6 2765742 2766137 -186513417 + L1MB8 LINE L1 5109 5502 -676 976 111 0 15 chr6 2766137 2766272 -186513282 + FLAM_C SINE Alu 1 133 0 3408 192 57 56 chr6 2766272 2766942 -186512612 + L1MB8 LINE L1 5502 6178 0 550 243 186 0 chr6 2767532 2767709 -186511845 - L1MC4 LINE L1 -36 8006 7797 1163 157 17 0 chr6 2767793 2767994 -186511560 - AluJb SINE Alu 0 307 104 2682 240 101 13 chr6 2767996 2768931 -186510623 - L1MC4 LINE L1 -287 7602 6509 390 289 146 50 chr6 2769601 2769840 -186509714 + L1ME LINE L1 5491 5752 -369 417 264 96 34 chr6 2770141 2770319 -186509235 + MIR SINE MIR 8 196 -66 256 208 58 19 chr6 2770592 2770746 -186508808 + (TA)n Simple_repeat Simple_repeat 2 161 0 22 0 0 0 chr6 2770769 2770791 -186508763 + AT_rich Low_complexity Low_complexity 1 22 0 387 270 57 28 chr6 2770935 2771183 -186508371 - L1ME3A LINE L1 -205 5965 5711 388 258 110 53 chr6 2771223 2771370 -186508184 - L1ME3A LINE L1 -604 5558 5421 1532 183 48 14 chr6 2771370 2771665 -186507889 - AluJo SINE Alu -7 305 1 388 258 110 53 chr6 2771665 2771781 -186507773 - L1ME3A LINE L1 -741 5421 5280 304 289 21 14 chr6 2771808 2771950 -186507604 - L1ME3A LINE L1 -897 5249 5107 678 145 8 0 chr6 2772297 2772414 -186507140 - MER2 DNA MER2_type -135 210 93 710 107 0 0 chr6 2772422 2772525 -186507029 - MER2 DNA MER2_type -135 210 108 670 238 219 66 chr6 2772538 2772903 -186506651 - MER21B LTR ERV1 -425 438 18 318 322 35 17 chr6 2772923 2773097 -186506457 + L1M4 LINE L1 4248 4424 -1722 531 188 147 12 chr6 2773798 2773979 -186505575 - MIR SINE MIR -21 241 40 1844 129 7 7 chr6 2774172 2774450 -186505104 - AluSc SINE Alu -13 296 19 2855 203 130 32 chr6 2774901 2776090 -186503464 - pTR5 LTR ERV1 -22 1523 6 1924 92 73 7 chr6 2776123 2776395 -186503159 + AluSp SINE Alu 1 290 -23 599 170 30 15 chr6 2776529 2776664 -186502890 + FRAM SINE Alu 1 136 -40 23 33 0 0 chr6 2777441 2777471 -186502083 + GC_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr6 2777844 2777881 -186501673 + GC_rich Low_complexity Low_complexity 1 37 0 23 101 0 0 chr6 2778009 2778088 -186501466 + GC_rich Low_complexity Low_complexity 1 79 0 26 0 0 0 chr6 2778305 2778331 -186501223 + GC_rich Low_complexity Low_complexity 1 26 0 206 263 0 0 chr6 2778355 2778431 -186501123 + G-rich Low_complexity Low_complexity 30 105 0 21 36 0 0 chr6 2778490 2778518 -186501036 + GC_rich Low_complexity Low_complexity 1 28 0 186 319 18 26 chr6 2779417 2779530 -186500024 + L3 LINE CR1 1123 1234 -343 25 31 0 0 chr6 2781664 2781696 -186497858 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr6 2781721 2781746 -186497808 + AT_rich Low_complexity Low_complexity 1 25 0 1192 142 78 23 chr6 2783804 2784023 -186495531 + MER46A DNA MER2_type 1 231 -5 181 207 17 86 chr6 2784406 2784464 -186495090 + MER5A DNA MER1_type 130 183 -6 333 222 154 8 chr6 2784632 2784749 -186494805 + L2 LINE L2 3139 3272 0 22 0 0 0 chr6 2786400 2786422 -186493132 + AT_rich Low_complexity Low_complexity 1 22 0 1004 211 40 103 chr6 2786540 2786939 -186492615 - MLT1B LTR MaLR -16 374 1 713 269 20 10 chr6 2787181 2787382 -186492172 - MIR SINE MIR -6 256 54 22 80 0 0 chr6 2788251 2788301 -186491253 + AT_rich Low_complexity Low_complexity 1 50 0 25 31 0 0 chr6 2789159 2789191 -186490363 + AT_rich Low_complexity Low_complexity 1 32 0 187 225 0 0 chr6 2790776 2790816 -186488738 - MIR SINE MIR -145 117 78 198 274 60 36 chr6 2790988 2791072 -186488482 + MIR3 SINE MIR 116 201 -7 213 280 11 32 chr6 2793169 2793262 -186486292 - MIR SINE MIR -49 213 123 651 198 142 6 chr6 2794078 2794240 -186485314 - MIR SINE MIR -71 191 8 267 315 36 0 chr6 2798510 2798621 -186480933 - HAL1 LINE L1 -702 1805 1691 661 293 168 19 chr6 2798663 2799080 -186480474 - HAL1 LINE L1 -620 1887 1409 321 143 89 0 chr6 2799083 2799139 -186480415 - HAL1 LINE L1 -1144 1363 1303 2137 98 0 25 chr6 2799140 2799457 -186480097 - AluSx SINE Alu -3 309 1 985 277 126 16 chr6 2799457 2800039 -186479515 - L2 LINE L2 -10 3303 2651 264 356 40 0 chr6 2800064 2800213 -186479341 - HAL1 LINE L1 -1879 628 474 533 287 62 14 chr6 2800299 2800508 -186479046 - HAL1 LINE L1 -2278 229 11 2036 123 0 16 chr6 2800539 2800855 -186478699 - AluSx SINE Alu -1 311 1 2688 29 0 0 chr6 2800887 2801197 -186478357 + AluYb8 SINE Alu 1 310 -8 2058 118 0 0 chr6 2801864 2802152 -186477402 + AluSx SINE Alu 1 288 -24 195 42 0 0 chr6 2802156 2802180 -186477374 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 406 226 96 78 chr6 2802840 2803070 -186476484 - LTR33 LTR ERVL -169 352 119 228 250 0 0 chr6 2803490 2803538 -186476016 + L2 LINE L2 3219 3266 -6 380 215 0 93 chr6 2803785 2803957 -186475597 - L1ME4a LINE L1 -3 6118 5963 309 51 0 0 chr6 2803961 2804000 -186475554 + (TG)n Simple_repeat Simple_repeat 1 39 0 2299 100 0 0 chr6 2804195 2804505 -186475049 - AluSx SINE Alu -2 310 1 465 294 166 5 chr6 2804606 2804817 -186474737 + MIR SINE MIR 15 259 -3 349 347 67 0 chr6 2805130 2805280 -186474274 - MIR SINE MIR 0 262 103 691 208 116 29 chr6 2805350 2805523 -186474031 - MER5A DNA MER1_type 0 189 2 245 219 74 12 chr6 2805867 2805949 -186473605 + MER91 DNA MER1_type 105 196 0 284 187 37 44 chr6 2807061 2807142 -186472412 + MIR3 SINE MIR 101 168 -40 1762 106 0 0 chr6 2807160 2807434 -186472120 + AluSg SINE Alu 46 319 0 226 361 62 0 chr6 2807582 2807679 -186471875 + MIR3 SINE MIR 83 185 -23 326 253 145 24 chr6 2808473 2808639 -186470915 + MER5A DNA MER1_type 1 186 -3 2406 62 0 3 chr6 2808644 2808950 -186470604 + AluY SINE Alu 1 305 -6 761 65 9 0 chr6 2810106 2810214 -186469340 + (TCC)n Simple_repeat Simple_repeat 1 109 0 327 270 73 64 chr6 2810932 2811165 -186468389 + MLT1K LTR MaLR 351 585 -3 2236 107 0 0 chr6 2811330 2811640 -186467914 - AluSx SINE Alu -2 310 1 188 220 119 0 chr6 2811873 2811932 -186467622 + MIR3 SINE MIR 3 68 -140 209 188 21 21 chr6 2812351 2812399 -186467155 - L3b LINE CR1 -8 1575 1528 2627 185 8 4 chr6 2812790 2813260 -186466294 - MER70A LTR ERVL 0 472 1 1819 185 49 3 chr6 2813266 2813762 -186465792 - MER70A-int LTR ERVL 0 5023 4469 28 0 0 0 chr6 2813762 2813790 -186465764 + AT_rich Low_complexity Low_complexity 1 28 0 3494 5 0 0 chr6 2813790 2814173 -186465381 - L1HS LINE L1 -3 6152 5770 14246 176 54 28 chr6 2814176 2815537 -186464017 - MER70A-int LTR ERVL -549 4474 3150 255 216 0 0 chr6 2815537 2815588 -186463966 + MER9 LTR ERVK 461 511 0 14246 176 54 28 chr6 2815588 2816957 -186462597 - MER70A-int LTR ERVL -1873 3150 1621 2271 160 76 10 chr6 2816957 2817251 -186462303 - MER70A-int LTR ERVL -3832 1191 918 1772 192 27 0 chr6 2817251 2817579 -186461975 - MER1B DNA MER1_type 0 337 1 2271 160 76 10 chr6 2817579 2818064 -186461490 - MER70A-int LTR ERVL -4105 918 467 372 22 0 0 chr6 2818064 2818109 -186461445 + (TG)n Simple_repeat Simple_repeat 2 46 0 2271 160 76 10 chr6 2818109 2818294 -186461260 - MER70A-int LTR ERVL -4556 467 1 966 149 19 91 chr6 2818294 2818462 -186461092 - MER70A LTR ERVL 0 472 320 4176 142 23 34 chr6 2818462 2819195 -186460359 + LTR8A LTR ERV1 1 725 -2 966 149 19 91 chr6 2819195 2819234 -186460320 - MER70A LTR ERVL -152 320 280 602 256 30 24 chr6 2819268 2819436 -186460118 + HAL1 LINE L1 539 707 -1800 275 272 25 12 chr6 2819444 2819525 -186460029 + HAL1 LINE L1 745 826 -1681 1099 253 80 26 chr6 2819562 2819949 -186459605 + HAL1 LINE L1 1404 1811 -696 458 216 18 9 chr6 2820106 2820217 -186459337 + HAL1 LINE L1 1690 1801 -706 3242 154 131 37 chr6 2820272 2820411 -186459143 + L1MA9 LINE L1 5483 5608 -704 1794 163 20 3 chr6 2820411 2820717 -186458837 + AluJo SINE Alu 1 311 -1 3242 154 131 37 chr6 2820717 2821331 -186458223 + L1MA9 LINE L1 5608 6307 -5 625 257 151 29 chr6 2821342 2821759 -186457795 + HAL1 LINE L1 1812 2279 -228 929 192 33 23 chr6 2823562 2823776 -186455778 - MER20 DNA MER1_type -3 216 1 234 295 0 0 chr6 2823783 2823844 -186455710 + (TA)n Simple_repeat Simple_repeat 2 62 0 766 208 36 24 chr6 2823859 2824027 -186455527 + MER6B DNA MER2_type 41 210 0 283 279 12 0 chr6 2824028 2824114 -186455440 + (TA)n Simple_repeat Simple_repeat 1 87 0 405 181 0 0 chr6 2824114 2824186 -186455368 + MER116 DNA Mariner 5 76 -4 248 239 136 34 chr6 2824374 2824462 -186455092 + MIR SINE MIR 137 233 -29 2313 103 0 0 chr6 2824704 2825015 -186454539 + AluSx SINE Alu 1 311 -1 749 254 83 8 chr6 2825052 2825304 -186454250 - L1ME1 LINE L1 -5 6161 5891 2210 55 4 0 chr6 2825310 2825583 -186453971 - AluY SINE Alu -10 301 28 274 275 0 0 chr6 2825687 2825756 -186453798 - AluS SINE Alu -231 69 1 2145 176 72 133 chr6 2825759 2826075 -186453479 - L1ME2 LINE L1 -267 5897 5564 854 159 0 0 chr6 2826075 2826207 -186453347 + FLAM_C SINE Alu 2 133 0 2145 176 72 133 chr6 2826207 2826519 -186453035 - L1ME2 LINE L1 -600 5564 5235 1222 183 5 0 chr6 2826519 2826733 -186452821 + L1PB4 LINE L1 5935 6154 -2 2145 176 72 133 chr6 2826733 2827357 -186452197 - L1ME2 LINE L1 -929 5235 4724 760 200 0 0 chr6 2827364 2827489 -186452065 + FLAM_C SINE Alu 3 127 -16 7296 214 46 48 chr6 2827494 2828234 -186451320 - L1ME2 LINE L1 -1414 4732 3993 189 0 0 0 chr6 2828234 2828255 -186451299 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 1547 183 4 0 chr6 2828257 2828531 -186451023 - AluJo SINE Alu -26 286 12 7296 214 46 48 chr6 2828531 2830070 -186449484 - L1ME2 LINE L1 -2154 3992 2453 2072 135 0 0 chr6 2831980 2832291 -186447263 + L1PA16 LINE L1 5483 5793 -373 413 137 14 0 chr6 2832291 2832361 -186447193 + L1PA16 LINE L1 6077 6150 -16 565 285 131 0 chr6 2832412 2832626 -186446928 + MIR SINE MIR 20 261 -1 295 206 11 0 chr6 2833317 2833397 -186446157 + L1ME3A LINE L1 6007 6091 -79 2071 126 0 0 chr6 2833519 2833829 -186445725 + AluY SINE Alu 1 310 -1 337 319 120 57 chr6 2834243 2834626 -186444928 - L1M4 LINE L1 -989 5157 4751 608 311 175 10 chr6 2834649 2835260 -186444294 - L1M4 LINE L1 -1448 4698 3987 683 258 36 22 chr6 2835379 2835443 -186444111 + L1ME2 LINE L1 5728 5790 -376 2055 214 0 0 chr6 2835443 2835808 -186443746 + MLT1A1 LTR MaLR 1 365 0 683 258 36 22 chr6 2835808 2835968 -186443586 + L1ME2 LINE L1 5790 5955 -211 381 288 61 0 chr6 2835975 2836107 -186443447 + L1ME2 LINE L1 6015 6154 -10 694 302 202 30 chr6 2836173 2836469 -186443085 + L2 LINE L2 1830 2074 -1240 2357 63 0 13 chr6 2836469 2836770 -186442784 - AluY SINE Alu -14 297 1 694 302 202 30 chr6 2836770 2837260 -186442294 + L2 LINE L2 2074 2751 -563 35 24 0 0 chr6 2837276 2837318 -186442236 + AT_rich Low_complexity Low_complexity 1 42 0 1727 94 0 84 chr6 2837318 2837398 -186442156 + AluSx SINE Alu 50 135 -177 2169 94 0 0 chr6 2837398 2837684 -186441870 + AluY SINE Alu 1 286 -25 1727 94 0 84 chr6 2837684 2837890 -186441664 + AluSx SINE Alu 135 312 0 1175 101 0 0 chr6 2837890 2838049 -186441505 + AluSg/x SINE Alu 134 292 -20 198 255 64 0 chr6 2838812 2838859 -186440695 + MIR SINE MIR 129 178 -84 713 122 0 0 chr6 2839049 2839147 -186440407 + AluJ/FLAM SINE Alu 2 99 -213 1975 122 0 0 chr6 2839166 2839453 -186440101 + AluSx SINE Alu 21 307 -5 24 32 0 0 chr6 2839458 2839489 -186440065 + AT_rich Low_complexity Low_complexity 1 31 0 424 265 59 73 chr6 2839806 2840146 -186439408 - L1M4 LINE L1 -934 5212 4878 244 261 34 67 chr6 2840182 2840301 -186439253 + MER94 DNA DNA 6 120 -14 877 261 124 57 chr6 2840334 2840527 -186439027 - L1M4 LINE L1 -1307 4839 4660 2398 81 0 0 chr6 2840527 2840835 -186438719 + AluSg SINE Alu 1 308 -2 877 261 124 57 chr6 2840835 2840934 -186438620 - L1M4 LINE L1 -1486 4660 4569 1691 133 36 30 chr6 2840934 2841235 -186438319 - AluJo SINE Alu -9 303 1 877 261 124 57 chr6 2841235 2841661 -186437893 - L1M4 LINE L1 -1577 4569 4072 277 301 14 27 chr6 2841672 2841818 -186437736 - L1MDa LINE L1 -3630 2499 2356 380 229 144 65 chr6 2841978 2842284 -186437270 - L1MDa LINE L1 -3809 2320 2031 563 281 124 42 chr6 2842448 2842930 -186436624 - L1MDa LINE L1 -4433 1696 1233 1641 173 3 10 chr6 2842971 2843260 -186436294 + AluJo SINE Alu 2 288 -24 22 35 0 0 chr6 2843260 2843289 -186436265 + AT_rich Low_complexity Low_complexity 1 29 0 710 279 96 100 chr6 2843289 2843891 -186435663 - L1MDa LINE L1 -4949 1170 571 293 297 20 10 chr6 2844318 2844419 -186435135 + MIR SINE MIR 50 151 -57 2253 115 0 0 chr6 2844928 2845240 -186434314 + AluSx SINE Alu 1 312 0 230 136 23 0 chr6 2846646 2846690 -186432864 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 869 170 7 0 chr6 2846701 2846991 -186432563 + (TCCA)n Simple_repeat Simple_repeat 1 292 0 418 211 138 24 chr6 2847187 2847310 -186432244 + MIR SINE MIR 125 261 -1 744 184 0 22 chr6 2847959 2848095 -186431459 + FLAM_A SINE Alu 1 133 0 824 193 0 0 chr6 2849113 2849258 -186430296 + AluJb SINE Alu 138 282 -30 206 32 32 0 chr6 2849262 2849293 -186430261 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2119 111 0 19 chr6 2849666 2849981 -186429573 - AluSx SINE Alu 0 312 4 367 226 0 29 chr6 2850541 2850643 -186428911 - L1MB2 LINE L1 0 6171 6073 419 244 38 53 chr6 2852533 2852664 -186426890 + L2 LINE L2 3184 3312 -1 22 0 0 0 chr6 2853510 2853532 -186426022 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 2853959 2853979 -186425575 + (TCCC)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr6 2854171 2854192 -186425362 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 2854325 2854347 -186425207 + GC_rich Low_complexity Low_complexity 1 22 0 824 196 40 67 chr6 2854691 2854916 -186424638 - MLT1A1 LTR MaLR -146 219 1 7751 203 45 40 chr6 2854916 2856644 -186422910 - MLT1A1-int LTR MaLR 0 1735 1 1365 179 56 88 chr6 2856644 2857018 -186422536 - MLT1A1 LTR MaLR 0 365 4 573 232 149 28 chr6 2857054 2857235 -186422319 + MLT1A1 LTR MaLR 163 365 0 202 80 40 40 chr6 2857717 2857767 -186421787 + T-rich Low_complexity Low_complexity 3 52 0 21 0 0 0 chr6 2857770 2857791 -186421763 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr6 2857966 2858005 -186421549 + AT_rich Low_complexity Low_complexity 1 39 0 1381 141 4 13 chr6 2858006 2858233 -186421321 + AluJo SINE Alu 87 311 -1 2134 111 6 19 chr6 2858489 2858805 -186420749 - AluSx SINE Alu 0 312 1 556 279 298 11 chr6 2859077 2859453 -186420101 + L2 LINE L2 2830 3313 0 1042 323 91 29 chr6 2859725 2859802 -186419752 + L3 LINE CR1 445 516 -1061 2346 70 3 0 chr6 2859802 2860100 -186419454 + AluSp SINE Alu 1 299 -14 1042 323 91 29 chr6 2860100 2860135 -186419419 + L3 LINE CR1 516 547 -1030 2171 109 0 0 chr6 2860135 2860437 -186419117 + AluSx SINE Alu 2 303 -9 1042 323 91 29 chr6 2860437 2860951 -186418603 + L3 LINE CR1 547 1111 -466 393 328 61 15 chr6 2861049 2861247 -186418307 + MIR SINE MIR 1 207 -55 2039 87 23 33 chr6 2861938 2862228 -186417326 + AluSx SINE Alu 1 289 -23 198 0 0 0 chr6 2862228 2862250 -186417304 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1817 106 92 3 chr6 2862522 2862804 -186416750 - AluSx SINE Alu -5 307 1 1610 154 0 52 chr6 2862881 2863186 -186416368 - AluJo SINE Alu -14 298 10 502 271 40 20 chr6 2863257 2863408 -186416146 - MER21B LTR ERV1 -612 251 98 456 221 0 0 chr6 2863447 2863524 -186416030 - MER21B LTR ERV1 -769 94 18 1946 101 3 39 chr6 2863524 2863722 -186415832 - AluSq SINE Alu 0 313 140 2015 121 0 13 chr6 2863722 2864036 -186415518 - AluSx SINE Alu -2 310 1 1946 101 3 39 chr6 2864036 2864172 -186415382 - AluSq SINE Alu -173 140 1 208 344 52 31 chr6 2864267 2864363 -186415191 - MIR3 SINE MIR -45 163 66 230 207 8 107 chr6 2865709 2865830 -186413724 + C-rich Low_complexity Low_complexity 5 113 0 404 192 22 82 chr6 2865877 2866059 -186413495 + CT-rich Low_complexity Low_complexity 2 172 0 890 194 29 0 chr6 2866138 2866313 -186413241 - L1MC3 LINE L1 -391 7394 7215 334 113 42 28 chr6 2866323 2866394 -186413160 - L1MC3 LINE L1 -1310 6475 6404 2167 108 0 3 chr6 2868828 2869133 -186410421 - AluSx SINE Alu -8 304 1 219 69 0 0 chr6 2870661 2870690 -186408864 + (CCCCCT)n Simple_repeat Simple_repeat 4 32 0 2048 125 0 0 chr6 2870734 2871031 -186408523 - AluSg SINE Alu -13 297 1 256 308 58 58 chr6 2871261 2871365 -186408189 - L2 LINE L2 -11 3261 3158 207 272 53 88 chr6 2871700 2871814 -186407740 + MIR SINE MIR 92 201 -61 2902 161 28 19 chr6 2871822 2872364 -186407190 + L1MA9 LINE L1 5476 6022 -290 7493 140 75 116 chr6 2872364 2874128 -186405426 + pTR5 LTR ERV1 743 2433 -5 550 235 68 8 chr6 2874173 2874305 -186405249 + AluSg/x SINE Alu 146 285 -25 1201 196 44 18 chr6 2874305 2874500 -186405054 + L1MA9 LINE L1 6031 6236 -76 2016 128 87 16 chr6 2874500 2874867 -186404687 + MSTD LTR MaLR 4 396 0 1201 196 44 18 chr6 2874867 2874946 -186404608 + L1MA9 LINE L1 6236 6312 0 1818 159 26 100 chr6 2875648 2876069 -186403485 - MLT1B LTR MaLR 0 390 1 1655 98 0 21 chr6 2876664 2876900 -186402654 + AluSx SINE Alu 1 231 -81 201 74 0 0 chr6 2876911 2876938 -186402616 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 180 227 15 45 chr6 2877521 2877587 -186401967 + L2 LINE L2 3171 3234 -79 287 181 0 36 chr6 2877672 2877755 -186401799 + C-rich Low_complexity Low_complexity 4 83 0 1709 149 4 4 chr6 2877772 2878048 -186401506 - AluJb SINE Alu -34 278 3 1165 206 124 65 chr6 2878051 2878463 -186401091 + LTR56 LTR ERV1 10 445 0 557 200 30 0 chr6 2878547 2878647 -186400907 + MER21B LTR ERV1 2 104 -759 1850 225 112 34 chr6 2878707 2879235 -186400319 + MER21B LTR ERV1 214 782 -81 645 173 39 0 chr6 2879326 2879430 -186400124 - FLAM_C SINE Alu -34 109 2 430 309 140 40 chr6 2879495 2879867 -186399687 + L1ME4a LINE L1 4981 5389 -757 332 359 38 11 chr6 2879902 2880086 -186399468 + L1ME4a LINE L1 5699 5887 -234 299 268 147 47 chr6 2880220 2880519 -186399035 + L1MC4 LINE L1 7525 7853 -189 878 82 8 0 chr6 2880632 2880754 -186398800 - AluY SINE Alu -19 292 170 296 233 124 32 chr6 2880755 2880976 -186398578 - L1MEc LINE L1 -5226 1721 1356 285 261 11 22 chr6 2881098 2881190 -186398364 - L1MEc LINE L1 -6269 869 779 205 371 114 0 chr6 2881280 2881385 -186398169 - MER5A DNA MER1_type -69 120 4 212 328 33 0 chr6 2881409 2881470 -186398084 + MER5B DNA MER1_type 26 88 -90 5683 188 88 56 chr6 2881499 2883037 -186396517 - pTR5 LTR ERV1 -157 2210 31 243 154 39 58 chr6 2883259 2883311 -186396243 - MER5B DNA MER1_type -127 51 1 234 259 19 0 chr6 2883311 2883363 -186396191 + MIR3 SINE MIR 153 205 -3 30 27 0 0 chr6 2883773 2883810 -186395744 + AT_rich Low_complexity Low_complexity 1 37 0 198 342 0 26 chr6 2883898 2883974 -186395580 - MIR SINE MIR -85 123 50 2071 133 0 0 chr6 2883977 2884286 -186395268 + AluSg SINE Alu 1 309 -1 798 288 125 16 chr6 2884483 2884797 -186394757 - MLT1I LTR MaLR 0 409 61 2220 123 18 47 chr6 2884797 2885178 -186394376 - THE1C LTR MaLR 0 375 6 278 213 16 16 chr6 2885209 2885270 -186394284 - MLT1I LTR MaLR -344 65 5 1773 136 9 28 chr6 2886123 2886440 -186393114 + AluJb SINE Alu 1 311 -1 542 300 106 25 chr6 2886451 2886688 -186392866 - MIR SINE MIR 0 262 7 1764 87 23 4 chr6 2887975 2888240 -186391314 + AluSx SINE Alu 1 270 -42 189 0 0 0 chr6 2888244 2888265 -186391289 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 38 89 0 0 chr6 2888483 2888584 -186390970 + GC_rich Low_complexity Low_complexity 1 101 0 13965 187 35 57 chr6 2889273 2895251 -186384303 + L1P5 LINE L1 6 6067 -800 2272 107 0 0 chr6 2895251 2895561 -186383993 + AluSg SINE Alu 1 310 0 13965 187 35 57 chr6 2895561 2895993 -186383561 + L1P5 LINE L1 6067 6507 -360 313 244 49 0 chr6 2896041 2896123 -186383431 + MLT1J1 LTR MaLR 350 435 -11 539 304 212 23 chr6 2896460 2896931 -186382623 - L2 LINE L2 -930 2384 1825 993 173 37 6 chr6 2897095 2897257 -186382297 - FAM SINE Alu -8 167 1 245 163 38 50 chr6 2897314 2897394 -186382160 + L1MB2 LINE L1 5309 5387 -2421 449 309 69 88 chr6 2897572 2897947 -186381607 - L1ME4a LINE L1 0 6121 5754 203 170 21 0 chr6 2897998 2898045 -186381509 + CT-rich Low_complexity Low_complexity 3 50 0 311 157 100 0 chr6 2898051 2898121 -186381433 + L1MB2 LINE L1 6088 6164 -7 314 312 109 18 chr6 2898152 2898373 -186381181 - L1ME4a LINE L1 -2099 5709 5469 2474 139 43 26 chr6 2898419 2898842 -186380712 - MSTB1 LTR MaLR 0 432 3 486 340 59 86 chr6 2898979 2899470 -186380084 + L1M4 LINE L1 4207 4684 -1462 2143 141 3 3 chr6 2899960 2900266 -186379288 + AluSx SINE Alu 1 306 -6 518 196 9 9 chr6 2900273 2900385 -186379169 + MER50 LTR ERV1 493 604 -130 4116 144 21 32 chr6 2900475 2901251 -186378303 + L1MB5 LINE L1 5408 6174 0 230 323 0 0 chr6 2901720 2901782 -186377772 + L2 LINE L2 3194 3255 -17 2646 35 0 7 chr6 2901809 2902119 -186377435 + AluY SINE Alu 1 308 -3 389 269 0 10 chr6 2903773 2903877 -186375677 - MIR SINE MIR 0 262 160 224 317 48 28 chr6 2903994 2904139 -186375415 - MIR3 SINE MIR -59 149 2 225 0 0 0 chr6 2904501 2904526 -186375028 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr6 2905019 2905041 -186374513 + AT_rich Low_complexity Low_complexity 1 22 0 589 67 48 0 chr6 2905573 2905677 -186373877 + (TA)n Simple_repeat Simple_repeat 1 109 0 1868 130 66 36 chr6 2907200 2907501 -186372053 - AluSx SINE Alu -2 310 1 225 209 9 19 chr6 2907692 2907797 -186371757 + GA-rich Low_complexity Low_complexity 2 105 0 724 124 133 0 chr6 2908263 2908376 -186371178 + FLAM_C SINE Alu 1 128 -5 457 294 94 85 chr6 2908967 2909302 -186370252 + L1M4 LINE L1 2584 2915 -3231 1888 155 55 0 chr6 2909302 2909593 -186369961 + AluJo SINE Alu 1 307 -5 457 294 94 85 chr6 2909593 2909628 -186369926 + L1M4 LINE L1 2915 2948 -3198 2305 118 0 0 chr6 2909628 2909932 -186369622 + AluSx SINE Alu 1 304 -8 457 294 94 85 chr6 2909932 2910181 -186369373 + L1M4 LINE L1 2948 3223 -2923 1095 134 0 41 chr6 2910352 2910555 -186368999 + AluSg/x SINE Alu 121 316 0 2414 81 10 0 chr6 2910980 2911276 -186368278 + AluY SINE Alu 1 299 -12 243 326 71 0 chr6 2911277 2911418 -186368136 + L1ME4a LINE L1 5970 6120 -1 2292 145 18 43 chr6 2911666 2912108 -186367446 + MER65A LTR ERV1 12 442 -3 396 0 0 0 chr6 2913332 2913376 -186366178 + (CA)n Simple_repeat Simple_repeat 1 44 0 183 80 0 0 chr6 2913807 2913832 -186365722 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2100 123 16 10 chr6 2914973 2915282 -186364272 - AluSx SINE Alu -1 311 1 615 228 69 0 chr6 2916704 2916849 -186362705 - MER96 DNA MER1_type? -1 174 20 1638 208 1 61 chr6 2916849 2917275 -186362279 - L1MB7 LINE L1 -2 6182 5776 859 258 10 7 chr6 2917274 2917576 -186361978 + L1M4 LINE L1 2903 3205 -2941 * 2252 115 3 0 chr6 2917590 2917885 -186361669 - AluSx SINE Alu -16 296 1 200 321 79 21 chr6 2918820 2918960 -186360594 - L2 LINE L2 0 3272 3125 1132 168 162 70 chr6 2919116 2919431 -186360123 - MER2 DNA MER2_type 0 344 1 301 186 0 20 chr6 2919615 2919717 -186359837 + (TG)n Simple_repeat Simple_repeat 1 100 0 287 251 16 8 chr6 2919738 2919999 -186359555 + (TG)n Simple_repeat Simple_repeat 1 263 0 420 271 0 25 chr6 2920080 2920410 -186359144 + (TG)n Simple_repeat Simple_repeat 1 321 0 270 239 6 12 chr6 2920429 2920592 -186358962 + (TG)n Simple_repeat Simple_repeat 1 162 0 8253 67 1 0 chr6 2921131 2922099 -186357455 + LTR5 LTR ERVK 1 969 0 2368 112 0 0 chr6 2922612 2922917 -186356637 + AluSx SINE Alu 1 305 -7 993 212 14 18 chr6 2923278 2923495 -186356059 - MER20 DNA MER1_type 0 219 4 2460 84 7 3 chr6 2924585 2924893 -186354661 + AluSx SINE Alu 1 309 -3 579 170 54 48 chr6 2925001 2925148 -186354406 + MLT1D LTR MaLR 1 148 -357 1437 60 27 0 chr6 2925486 2925671 -186353883 - L1PA4 LINE L1 -1 6154 5965 3177 134 112 2 chr6 2925965 2926511 -186353043 - MER4B LTR ERV1 -4 606 1 1127 187 196 6 chr6 2926557 2926873 -186352681 + MLT1D LTR MaLR 130 505 0 231 355 167 21 chr6 2926979 2927165 -186352389 - MIR SINE MIR -37 225 13 2309 98 7 0 chr6 2927275 2927572 -186351982 - AluSx SINE Alu -13 299 1 2125 144 0 0 chr6 2928052 2928350 -186351204 - AluSx SINE Alu -14 298 1 186 103 0 0 chr6 2929706 2929735 -186349819 + (CA)n Simple_repeat Simple_repeat 2 30 0 739 200 0 8 chr6 2930050 2930180 -186349374 + FLAM_A SINE Alu 2 130 -3 3383 147 37 35 chr6 2930901 2931058 -186348496 + MER41B LTR ERV1 1 156 -479 1752 165 7 20 chr6 2931058 2931361 -186348193 + AluJo SINE Alu 1 299 -13 3383 147 37 35 chr6 2931361 2931829 -186347725 + MER41B LTR ERV1 156 627 -8 1498 71 0 5 chr6 2932207 2932403 -186347151 - MER4E LTR ERV1 0 779 585 21 36 0 0 chr6 2932656 2932684 -186346870 + GC_rich Low_complexity Low_complexity 1 28 0 2830 86 30 92 chr6 2932735 2933428 -186346126 + SVA Other Other 393 868 -555 1458 101 6 60 chr6 2933441 2933777 -186345777 + SVA Other Other 549 866 -520 6559 71 3 60 chr6 2933843 2934855 -186344699 + SVA Other Other 433 1386 0 1273 99 117 9 chr6 2934872 2935085 -186344469 - MER4B LTR ERV1 -183 427 192 337 174 14 0 chr6 2935100 2935169 -186344385 - AluSp/q SINE Alu -3 300 231 200 321 79 21 chr6 2935369 2935509 -186344045 - L2 LINE L2 0 3272 3125 1141 175 156 63 chr6 2935665 2935980 -186343574 - MER2 DNA MER2_type 0 344 1 301 186 0 20 chr6 2936164 2936266 -186343288 + (TG)n Simple_repeat Simple_repeat 1 100 0 305 239 12 20 chr6 2936287 2936548 -186343006 + (TG)n Simple_repeat Simple_repeat 1 258 0 420 271 0 25 chr6 2936629 2936959 -186342595 + (TG)n Simple_repeat Simple_repeat 1 321 0 234 245 6 13 chr6 2936978 2937137 -186342417 + (TG)n Simple_repeat Simple_repeat 1 158 0 8253 67 1 0 chr6 2937676 2938644 -186340910 + LTR5 LTR ERVK 1 969 0 2368 112 0 0 chr6 2939157 2939462 -186340092 + AluSx SINE Alu 1 305 -7 993 212 14 18 chr6 2939823 2940040 -186339514 - MER20 DNA MER1_type 0 219 4 2468 84 7 3 chr6 2941130 2941439 -186338115 + AluSx SINE Alu 1 310 -2 579 170 54 48 chr6 2941549 2941696 -186337858 + MLT1D LTR MaLR 1 148 -357 1322 76 32 5 chr6 2942034 2942219 -186337335 - L1PA4 LINE L1 -1 6154 5965 3177 134 112 2 chr6 2942513 2943059 -186336495 - MER4B LTR ERV1 -4 606 1 1127 187 196 6 chr6 2943105 2943421 -186336133 + MLT1D LTR MaLR 130 505 0 236 355 167 21 chr6 2943527 2943713 -186335841 - MIR SINE MIR -37 225 13 2318 97 7 0 chr6 2943823 2944121 -186335433 - AluSx SINE Alu -12 300 1 2138 141 0 0 chr6 2944601 2944899 -186334655 - AluSx SINE Alu -14 298 1 186 103 0 0 chr6 2946254 2946283 -186333271 + (CA)n Simple_repeat Simple_repeat 2 30 0 739 200 0 8 chr6 2946598 2946728 -186332826 + FLAM_A SINE Alu 2 130 -3 3578 139 37 35 chr6 2947449 2947606 -186331948 + MER41B LTR ERV1 1 156 -479 1603 165 7 20 chr6 2947606 2947909 -186331645 + AluJo SINE Alu 1 299 -13 3578 139 37 35 chr6 2947909 2948377 -186331177 + MER41B LTR ERV1 156 627 -8 3117 107 26 32 chr6 2948755 2949163 -186330391 - MER4B LTR ERV1 0 779 201 1946 97 29 42 chr6 2949163 2949472 -186330082 - AluSx SINE Alu -7 305 1 3117 107 26 32 chr6 2949472 2949672 -186329882 - MER4B LTR ERV1 -578 201 1 2174 191 48 0 chr6 2950166 2950606 -186328948 - LOR1b LTR ERV1 0 461 1 530 130 11 22 chr6 2950606 2950698 -186328856 - LOR1b-int LTR ERV1 0 8120 8030 * 1638 141 8 4 chr6 2950697 2950960 -186328594 - MER41D-int LTR ERV1 -2056 6064 5801 * 33066 101 37 24 chr6 2950950 2954884 -186324670 - MER41D-int LTR ERV1 -2596 5524 1640 2810 193 43 55 chr6 2954884 2955718 -186323836 - LTR5 LTR ERVK -145 824 1 33066 101 37 24 chr6 2955718 2956504 -186323050 - MER41D-int LTR ERV1 -6480 1640 730 9203 40 2 3 chr6 2956504 2957574 -186321980 + MER11C LTR ERVK 1 1069 -2 33066 101 37 24 chr6 2957574 2958098 -186321456 - MER41D-int LTR ERV1 -7390 730 214 1945 117 34 0 chr6 2958098 2958396 -186321158 + AluSx SINE Alu 1 308 -4 601 170 0 45 chr6 2958455 2958491 -186321063 - FRAM SINE Alu -183 129 93 2818 168 17 73 chr6 2958491 2958858 -186320696 - MER41D LTR ERV1 0 557 234 2018 104 0 7 chr6 2958858 2959146 -186320408 + AluSg SINE Alu 1 286 -24 2818 168 17 73 chr6 2959146 2959368 -186320186 - MER41D LTR ERV1 -323 234 1 601 170 0 45 chr6 2959368 2959443 -186320111 - FRAM SINE Alu -219 93 23 494 207 224 62 chr6 2959531 2959595 -186319959 - Charlie7 DNA MER1_type -586 2026 1974 2040 120 3 3 chr6 2959595 2959904 -186319650 - AluSx SINE Alu -3 309 1 494 207 224 62 chr6 2959904 2960192 -186319362 - Charlie7 DNA MER1_type -638 1974 1617 323 213 16 0 chr6 2960643 2960704 -186318850 - MER94 DNA DNA -1 133 72 324 118 118 0 chr6 2960827 2960895 -186318659 - LTR50 LTR ERVL -7 788 713 1874 147 3 3 chr6 2961974 2962280 -186317274 - AluSx SINE Alu -6 306 1 2136 107 3 3 chr6 2962520 2962828 -186316726 + AluSg SINE Alu 1 308 -2 311 152 0 0 chr6 2963172 2963218 -186316336 + Alu SINE Alu 252 297 -11 1576 237 57 0 chr6 2963735 2964191 -186315363 - MER114 LTR ERV -121 527 46 742 255 13 0 chr6 2964206 2964363 -186315191 - MER45A DNA AcHobo 0 178 20 605 184 9 9 chr6 2964565 2964679 -186314875 - MLT1A2 LTR MaLR 0 374 261 7713 154 73 68 chr6 2964679 2966357 -186313197 + pTR5 LTR ERV1 743 2429 -9 230 187 67 53 chr6 2966627 2966702 -186312852 - L1MA7 LINE L1 -4 6287 6212 2241 124 29 9 chr6 2966702 2967048 -186312506 - LTR1 LTR ERV1 0 785 433 1378 158 12 116 chr6 2967064 2967399 -186312155 - LTR1 LTR ERV1 -462 323 24 388 123 92 0 chr6 2967434 2967499 -186312055 - L1MA8 LINE L1 -76 6215 6145 291 294 165 0 chr6 2967499 2967608 -186311946 + MER50 LTR ERV1 1 127 -607 820 266 122 42 chr6 2967671 2968017 -186311537 + MER50 LTR ERV1 105 490 -244 2076 115 3 0 chr6 2968017 2968312 -186311242 + AluY SINE Alu 1 296 -15 820 266 122 42 chr6 2968312 2968374 -186311180 + MER50 LTR ERV1 490 546 -188 4299 174 67 59 chr6 2968439 2969819 -186309735 + pTR5 LTR ERV1 724 2436 -2 22 0 0 0 chr6 2969924 2969946 -186309608 + AT_rich Low_complexity Low_complexity 1 22 0 583 226 24 8 chr6 2970001 2970125 -186309429 + FLAM_A SINE Alu 4 129 -4 877 128 101 13 chr6 2970208 2970357 -186309197 - MER44D DNA MER2_type 0 605 444 844 89 0 0 chr6 2970414 2970527 -186309027 - MER4E LTR ERV1 -14 765 485 3101 123 161 21 chr6 2970532 2971110 -186308444 - MER4D LTR ERV1 -237 666 8 2267 87 3 0 chr6 2971110 2971409 -186308145 + AluSp SINE Alu 1 300 -13 421 211 120 49 chr6 2971425 2971463 -186308091 - MER44D DNA MER2_type -2069 422 388 2097 90 10 3 chr6 2971463 2971751 -186307803 + AluSq SINE Alu 1 290 -23 421 211 120 49 chr6 2971751 2971766 -186307788 - MER44D DNA MER2_type -2103 388 375 213 39 0 0 chr6 2971766 2971792 -186307762 + (TC)n Simple_repeat Simple_repeat 1 26 0 421 211 120 49 chr6 2971792 2971879 -186307675 - MER44D DNA MER2_type -2116 375 1 1851 180 50 40 chr6 2971899 2972343 -186307211 + MER83 LTR ERV1 1 448 0 2084 125 0 6 chr6 2972740 2973053 -186306501 + AluSx SINE Alu 1 311 -1 1728 144 3 11 chr6 2974567 2974871 -186304683 + AluSx SINE Alu 1 302 0 2238 87 0 0 chr6 2975465 2975764 -186303790 + AluY SINE Alu 1 299 -12 989 95 15 7 chr6 2975773 2975910 -186303644 + AluSg SINE Alu 1 138 -172 2113 103 0 19 chr6 2975911 2976222 -186303332 + AluSx SINE Alu 1 305 -7 1263 310 170 13 chr6 2978232 2979263 -186300291 + L2 LINE L2 2094 3290 -23 2197 95 0 0 chr6 2979270 2979564 -186299990 + AluSx SINE Alu 6 299 -13 183 194 0 0 chr6 2979564 2979595 -186299959 + L2 LINE L2 3240 3270 -2 588 250 83 46 chr6 2979988 2980118 -186299436 - MER58A DNA MER1_type -2196 224 81 2160 113 0 0 chr6 2980118 2980429 -186299125 + AluSq SINE Alu 1 311 -2 588 250 83 46 chr6 2980429 2980514 -186299040 - MER58A DNA MER1_type -2339 81 1 314 163 101 93 chr6 2980877 2981006 -186298548 + MLT1J LTR MaLR 209 338 -173 201 291 18 0 chr6 2981585 2981640 -186297914 - L2 LINE L2 -2 3270 3215 1740 161 3 35 chr6 2982566 2982788 -186296766 + AluJo SINE Alu 1 212 -100 1908 115 0 11 chr6 2982788 2983066 -186296488 + AluSc SINE Alu 23 297 -12 1740 161 3 35 chr6 2983066 2983154 -186296400 + AluJo SINE Alu 212 301 -11 2209 114 0 0 chr6 2983925 2984233 -186295321 + AluSx SINE Alu 1 308 -4 2160 89 7 0 chr6 2984812 2985105 -186294449 + AluSx SINE Alu 1 295 -17 531 210 185 107 chr6 2985304 2985557 -186293997 + MLT1H1 LTR MaLR 66 298 -257 2295 77 3 0 chr6 2985557 2985854 -186293700 + AluSp SINE Alu 1 298 -15 531 210 185 107 chr6 2985854 2986048 -186293506 + MLT1H1 LTR MaLR 298 548 -7 292 260 0 13 chr6 2986063 2986140 -186293414 + MLT1H1-int LTR MaLR 15 90 -1281 252 224 138 0 chr6 2986291 2986349 -186293205 + MLT1H1-int LTR MaLR 476 541 -830 1737 171 13 0 chr6 2987023 2987321 -186292233 + MLT1B LTR MaLR 1 302 -88 1051 221 71 24 chr6 2989741 2990189 -186289365 + MLT1D LTR MaLR 1 505 0 695 156 25 8 chr6 2990917 2991039 -186288515 - AluJb SINE Alu -187 125 2 448 277 161 0 chr6 2991419 2991574 -186287980 + MIR3 SINE MIR 20 199 -9 343 333 113 33 chr6 2991802 2992267 -186287287 + L1 LINE L1 3930 4429 -1717 233 373 24 24 chr6 2992340 2992509 -186287045 - MIR SINE MIR -90 172 4 516 271 46 13 chr6 2993005 2993156 -186286398 + LTR35 LTR ERV1 463 618 0 578 238 78 24 chr6 2993630 2993836 -186285718 - HAL1 LINE L1 0 2507 2291 787 215 0 6 chr6 2993841 2994004 -186285550 - AluJo SINE Alu 0 312 151 290 236 95 107 chr6 2994071 2994313 -186285241 - HAL1 LINE L1 -358 2149 1911 1860 158 13 16 chr6 2995445 2995748 -186283806 + MER1B DNA MER1_type 38 339 0 872 182 13 0 chr6 2995813 2995972 -186283582 - AluJo SINE Alu -151 161 1 6006 94 14 25 chr6 2996255 2997491 -186282063 + L1PA14 LINE L1 4941 6161 0 3281 95 21 31 chr6 2996976 2997493 -186282061 + L1PA13 LINE L1 5652 6163 0 356 287 17 98 chr6 2997685 2997859 -186281695 - HAL1 LINE L1 -1606 901 742 222 240 0 0 chr6 2998362 2998412 -186281142 + (TA)n Simple_repeat Simple_repeat 2 51 0 287 49 24 0 chr6 2998779 2998820 -186280734 + (TG)n Simple_repeat Simple_repeat 2 43 0 1100 103 0 0 chr6 2998872 2999017 -186280537 + AluSg SINE Alu 1 145 -165 429 115 179 0 chr6 2999017 2999095 -186280459 + AluSc SINE Alu 201 292 -17 198 103 0 0 chr6 2999742 2999771 -186279783 + (A)n Simple_repeat Simple_repeat 1 29 0 215 222 25 37 chr6 3000401 3000482 -186279072 + C-rich Low_complexity Low_complexity 1 80 0 391 133 0 0 chr6 3000899 3000959 -186278595 + MER41B LTR ERV1 131 190 -445 2021 85 61 0 chr6 3000960 3001254 -186278300 + AluSx SINE Alu 1 312 0 6101 83 25 20 chr6 3001256 3002197 -186277357 + L1PB1 LINE L1 5151 6097 -54 1908 130 7 17 chr6 3002197 3002497 -186277057 + AluSg SINE Alu 1 297 -13 6101 83 25 20 chr6 3002497 3002553 -186277001 + L1PB1 LINE L1 6097 6151 0 32 26 0 0 chr6 3002554 3002593 -186276961 + AT_rich Low_complexity Low_complexity 1 39 0 430 239 19 65 chr6 3002846 3003001 -186276553 - MER20 DNA MER1_type 0 219 72 389 273 66 93 chr6 3003018 3003484 -186276070 - L1M4 LINE L1 -906 5240 4798 2120 112 0 0 chr6 3003606 3003902 -186275652 - AluSg SINE Alu -14 296 1 1913 150 0 0 chr6 3003958 3004245 -186275309 + AluSg SINE Alu 1 287 -23 33 0 0 0 chr6 3004245 3004278 -186275276 + AT_rich Low_complexity Low_complexity 1 33 0 436 162 0 0 chr6 3004292 3004360 -186275194 + AluS SINE Alu 2 69 -243 218 54 0 27 chr6 3004380 3004417 -186275137 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 485 308 65 16 chr6 3004420 3004895 -186274659 - L1M4 LINE L1 -1530 4616 4122 196 360 11 22 chr6 3004948 3005037 -186274517 + L3 LINE CR1 324 411 -1166 222 239 60 15 chr6 3005315 3005382 -186274172 + L3 LINE CR1 892 961 -616 4868 133 47 21 chr6 3006185 3007055 -186272499 - MER4D LTR ERV1 0 872 1 22 0 0 0 chr6 3007135 3007157 -186272397 + AT_rich Low_complexity Low_complexity 1 22 0 2170 142 39 88 chr6 3007944 3008276 -186271278 + MER4B LTR ERV1 1 348 -431 1778 148 40 0 chr6 3008276 3008573 -186270981 - AluJb SINE Alu -3 309 1 2170 142 39 88 chr6 3008573 3008847 -186270707 + MER4B LTR ERV1 348 779 0 3820 147 3 51 chr6 3008936 3009603 -186269951 + MER41B LTR ERV1 1 635 0 2363 161 60 31 chr6 3010956 3010993 -186268561 + MER31A LTR ERV1 1 35 -450 1876 130 22 0 chr6 3010993 3011428 -186268126 - AluSx SINE Alu 0 441 1 2363 161 60 31 chr6 3011428 3011843 -186267711 + MER31A LTR ERV1 35 467 -18 216 297 16 0 chr6 3012104 3012168 -186267386 + CT-rich Low_complexity Low_complexity 4 68 0 806 160 23 0 chr6 3012185 3012316 -186267238 - FRAM SINE Alu -38 138 5 382 182 0 26 chr6 3013091 3013168 -186266386 + MER39 LTR ERV1 633 707 0 2053 120 0 14 chr6 3013201 3013493 -186266061 + AluSx SINE Alu 1 288 -24 1136 116 0 0 chr6 3013508 3013672 -186265882 + AluSg/x SINE Alu 130 293 -17 2224 103 0 0 chr6 3014488 3014790 -186264764 - AluSx SINE Alu -10 302 1 2289 88 0 0 chr6 3015256 3015552 -186264002 - AluSg SINE Alu -14 296 1 343 299 97 83 chr6 3015552 3015830 -186263724 - L2 LINE L2 -6 3266 2985 2296 137 154 7 chr6 3016055 3016510 -186263044 - MER1A DNA MER1_type -8 525 1 2140 113 0 0 chr6 3016616 3016916 -186262638 + AluSg SINE Alu 1 300 -10 318 325 68 24 chr6 3016925 3017174 -186262380 - L2 LINE L2 -798 2516 2257 285 321 0 79 chr6 3019729 3019869 -186259685 + L2 LINE L2 3141 3269 -3 3913 105 27 5 chr6 3019906 3020458 -186259096 + LTR6A LTR ERV1 1 564 0 33 43 0 0 chr6 3020718 3020765 -186258789 + AT_rich Low_complexity Low_complexity 1 47 0 1945 122 0 22 chr6 3020818 3021129 -186258425 + AluSx SINE Alu 1 304 -8 520 176 77 6 chr6 3021465 3021591 -186257963 - L1MD3 LINE L1 0 7982 6246 2172 197 35 0 chr6 3021592 3022014 -186257540 - MER54A LTR ERVL 0 901 465 259 199 164 68 chr6 3021955 3022101 -186257453 + MER74A LTR ERVL 355 514 -44 * 316 223 100 3 chr6 3022121 3022227 -186257327 - L1MD3 LINE L1 -108 7871 7565 2499 56 0 0 chr6 3022387 3022692 -186256862 - AluY SINE Alu -6 305 1 282 91 0 0 chr6 3023108 3023149 -186256405 + MSTB1 LTR MaLR 4 44 -382 812 213 0 6 chr6 3023149 3023323 -186256231 - FRAM SINE Alu -3 173 1 2145 128 80 13 chr6 3023323 3023698 -186255856 + MSTB1 LTR MaLR 33 432 0 1341 215 100 0 chr6 3024137 3024448 -186255106 + MER2 DNA MER2_type 2 343 -1 470 180 9 81 chr6 3024694 3024805 -186254749 - Tigger1 DNA MER2_type -2315 103 1 274 109 254 0 chr6 3024808 3024863 -186254691 + L1M4c LINE L1 1452 1520 -4864 * 2715 164 58 39 chr6 3024858 3025285 -186254269 + L1MB4 LINE L1 4827 5245 -935 2317 74 3 0 chr6 3025285 3025584 -186253970 + AluSp SINE Alu 1 300 -13 2715 164 58 39 chr6 3025584 3026068 -186253486 + L1MB4 LINE L1 5245 5773 -407 591 15 0 0 chr6 3026078 3026146 -186253408 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 1356 147 9 0 chr6 3026147 3026371 -186253183 - AluSp SINE Alu 0 313 88 1704 181 18 29 chr6 3026387 3026618 -186252936 + L1MB4 LINE L1 5799 6026 -154 1797 130 51 0 chr6 3026618 3026910 -186252644 - AluSx SINE Alu -5 307 1 1704 181 18 29 chr6 3026910 3027064 -186252490 + L1MB4 LINE L1 6026 6180 0 297 271 97 7 chr6 3028347 3028491 -186251063 - L1MD1 LINE L1 -87 6155 5999 262 86 0 0 chr6 3028568 3028603 -186250951 - tRNA-Gly-GGG tRNA tRNA -39 35 1 314 237 32 11 chr6 3028612 3028705 -186250849 - L1MD1 LINE L1 -456 5903 5809 258 145 13 64 chr6 3028896 3029060 -186250494 + (CGGGG)n Simple_repeat Simple_repeat 1 155 0 183 286 20 0 chr6 3029554 3029603 -186249951 - MIR SINE MIR -88 174 125 2176 72 14 3 chr6 3029793 3030086 -186249468 - AluSg SINE Alu -14 296 1 1547 113 4 4 chr6 3030089 3030319 -186249235 - AluSg/x SINE Alu -8 302 73 2208 102 16 3 chr6 3030330 3030635 -186248919 - AluSq SINE Alu -4 309 1 2064 130 0 3 chr6 3031559 3031858 -186247696 - AluSx SINE Alu -13 299 2 279 352 56 28 chr6 3031866 3032045 -186247509 + L2 LINE L2 2718 2901 -413 290 214 0 0 chr6 3032046 3032102 -186247452 - AluJo SINE Alu 0 302 247 1028 163 6 12 chr6 3032103 3032275 -186247279 - AluJo SINE Alu -112 200 30 298 270 92 116 chr6 3033183 3033476 -186246078 - MLT1J LTR MaLR -127 384 99 246 228 0 0 chr6 3034056 3034113 -186245441 - L1MB2 LINE L1 0 6171 6115 1497 84 0 0 chr6 3034154 3034344 -186245210 - AluSx SINE Alu -122 190 1 2006 182 51 31 chr6 3034380 3034879 -186244675 - L1M3 LINE L1 -408 5772 5266 303 265 29 20 chr6 3035068 3035170 -186244384 - MIR SINE MIR -66 142 40 541 191 0 0 chr6 3035837 3035926 -186243628 - FLAM SINE Alu -15 128 40 241 321 24 73 chr6 3035999 3036164 -186243390 + L2 LINE L2 3138 3294 -19 1014 177 14 32 chr6 3036354 3036574 -186242980 - MER20 DNA MER1_type -3 216 1 2164 92 23 3 chr6 3037385 3037690 -186241864 + AluSp SINE Alu 1 311 -2 1121 130 0 6 chr6 3037717 3037879 -186241675 + AluSx SINE Alu 1 161 -151 4183 106 11 11 chr6 3037915 3038531 -186241023 - MER11C LTR ERVK -14 1057 442 5682 173 56 16 chr6 3038642 3040341 -186239213 + L1M3f LINE L1 269 2035 -4065 365 288 137 7 chr6 3040353 3040499 -186239055 + MIR SINE MIR 81 245 -17 2690 16 0 0 chr6 3041087 3041395 -186238159 - AluY SINE Alu -3 308 1 536 274 105 11 chr6 3042870 3043060 -186236494 - MIR SINE MIR -8 254 47 298 289 114 0 chr6 3043872 3043986 -186235568 - L2 LINE L2 -1 3312 3186 2240 103 0 0 chr6 3044289 3044591 -186234963 + AluSx SINE Alu 1 302 -10 357 145 0 0 chr6 3045161 3045223 -186234331 + (CA)n Simple_repeat Simple_repeat 1 62 0 304 289 10 39 chr6 3046001 3046105 -186233449 - L1MB2 LINE L1 -2453 5355 5255 393 241 145 48 chr6 3046136 3046364 -186233190 - L1MB2 LINE L1 -1686 4460 4211 1981 113 7 0 chr6 3046365 3046678 -186232876 + AluSx SINE Alu 1 315 0 599 259 100 80 chr6 3046977 3047328 -186232226 - L1ME4a LINE L1 0 6121 5764 3154 169 7 4 chr6 3047920 3048483 -186231071 - L1PA16 LINE L1 -3 6163 5599 825 168 0 21 chr6 3048617 3048763 -186230791 - FLAM_C SINE Alu 0 143 4 1600 135 39 143 chr6 3049013 3049115 -186230439 + MER7A DNA MER2_type 3 114 -2924 1451 173 60 7 chr6 3049115 3049398 -186230156 - AluJo SINE Alu -12 300 3 1600 135 39 143 chr6 3049398 3049679 -186229875 + MER7A DNA MER2_type 114 344 -2 484 70 0 56 chr6 3049694 3049765 -186229789 + Alu SINE Alu 5 71 -240 371 240 142 49 chr6 3049785 3049989 -186229565 - L1 LINE L1 -1713 4433 4211 1955 75 68 4 chr6 3049990 3050271 -186229283 + AluY SINE Alu 1 299 -12 1666 168 7 21 chr6 3050276 3050567 -186228987 + AluJo SINE Alu 1 287 -25 1537 190 7 7 chr6 3050568 3050873 -186228681 + AluJb SINE Alu 1 305 -7 2238 66 17 0 chr6 3052546 3052833 -186226721 - AluSp SINE Alu -21 292 1 2065 81 3 14 chr6 3053375 3053658 -186225896 + AluSx SINE Alu 22 301 -11 222 206 63 16 chr6 3053661 3053724 -186225830 - MIR SINE MIR -162 100 35 880 310 114 34 chr6 3053804 3054337 -186225217 + MLT1K LTR MaLR 12 587 -1 340 267 44 0 chr6 3054592 3054682 -186224872 + MIR SINE MIR 55 148 -60 372 305 58 0 chr6 3055046 3055200 -186224354 - MIR SINE MIR -87 175 13 330 329 29 7 chr6 3055364 3055504 -186224050 + L1MEd LINE L1 300 442 -5974 4688 167 30 47 chr6 3055658 3056894 -186222660 + pTR5 LTR ERV1 6 595 -119 492 320 59 15 chr6 3057053 3057325 -186222229 + L1MEd LINE L1 854 1137 -5279 1687 167 10 3 chr6 3057421 3057714 -186221840 + AluJo SINE Alu 1 295 -17 326 250 167 36 chr6 3057840 3058008 -186221546 + L1MEd LINE L1 2178 2367 -4059 740 314 59 15 chr6 3058038 3058503 -186221051 + L1MEd LINE L1 2401 2889 -3537 2190 80 7 0 chr6 3058503 3058790 -186220764 + AluSp SINE Alu 1 289 -24 740 314 59 15 chr6 3058790 3058801 -186220753 + L1MEd LINE L1 2889 2898 -3528 269 231 26 39 chr6 3058846 3058924 -186220630 + L1ME3A LINE L1 5485 5561 -603 318 321 120 55 chr6 3058969 3059243 -186220311 + L1ME3A LINE L1 5799 6090 -80 1680 183 0 14 chr6 3059360 3059655 -186219899 + AluJo SINE Alu 1 291 -21 660 88 22 0 chr6 3060025 3060116 -186219438 - AluJb SINE Alu -15 297 205 794 161 0 29 chr6 3061719 3061856 -186217698 + FLAM_C SINE Alu 1 133 0 963 198 19 14 chr6 3061945 3062152 -186217402 - MLT1A1 LTR MaLR 0 365 158 985 150 0 53 chr6 3062152 3062339 -186217215 - AluJo SINE Alu -135 177 1 1485 239 23 47 chr6 3062379 3062806 -186216748 + MLT1C LTR MaLR 1 417 -50 472 106 9 50 chr6 3062839 3062933 -186216621 + L1MDa LINE L1 1217 1304 -5236 1686 171 7 10 chr6 3062933 3063238 -186216316 + AluJo SINE Alu 1 304 -8 472 106 9 50 chr6 3063238 3063290 -186216264 + L1MDa LINE L1 1304 1357 -5183 * 624 207 41 12 chr6 3063289 3063458 -186216096 + L1MDa LINE L1 1644 1817 -4723 2341 242 57 7 chr6 3063461 3063519 -186216035 + L1MDa LINE L1 2952 3006 -3534 2387 149 16 71 chr6 3063519 3063970 -186215584 + MSTB LTR MaLR 1 426 0 2341 242 57 7 chr6 3063970 3064660 -186214894 + L1MDa LINE L1 3006 3738 -2802 2442 122 100 5 chr6 3064675 3065084 -186214470 + MER83 LTR ERV1 1 448 0 9622 179 22 42 chr6 3065108 3066938 -186212616 + MER83-int LTR ERV1 22 1815 -2470 2109 174 14 68 chr6 3066907 3066990 -186212564 + MER83-int LTR ERV1 4373 4459 -1487 * 1853 36 5 0 chr6 3066990 3067212 -186212342 - L1PA4 LINE L1 -8 6147 5925 2109 174 14 68 chr6 3067212 3067616 -186211938 + MER83-int LTR ERV1 4459 4834 -1112 1646 176 37 3 chr6 3067769 3068065 -186211489 + AluJb SINE Alu 1 306 -6 3315 145 59 66 chr6 3068065 3068756 -186210798 + MER83-int LTR ERV1 5365 6204 -394 2329 44 40 7 chr6 3068756 3069053 -186210501 + AluY SINE Alu 3 309 -2 3315 145 59 66 chr6 3069053 3069105 -186210449 + MER83-int LTR ERV1 6204 6255 -343 445 151 118 132 chr6 3069140 3069292 -186210262 + MER83-int LTR ERV1 5924 6073 -258 * 2109 141 62 25 chr6 3069287 3069641 -186209913 + MER83-int LTR ERV1 2663 3029 -1256 * 2138 175 17 62 chr6 3069634 3070052 -186209502 + MER83-int LTR ERV1 3876 4274 -11 2390 130 78 53 chr6 3070053 3070426 -186209128 + MER83 LTR ERV1 1 388 -60 2210 86 3 0 chr6 3070426 3070717 -186208837 - AluSp SINE Alu -21 292 1 2390 130 78 53 chr6 3070717 3070780 -186208774 + MER83 LTR ERV1 388 448 0 1196 232 58 35 chr6 3070811 3071242 -186208312 + L1MDa LINE L1 3779 4219 -2321 1893 130 7 33 chr6 3071259 3071560 -186207994 + AluSx SINE Alu 1 293 -19 652 235 36 41 chr6 3071594 3071815 -186207739 + L1MDa LINE L1 4158 4377 -2163 226 53 0 0 chr6 3071820 3071858 -186207696 - AluJo SINE Alu 0 302 265 800 119 8 0 chr6 3071858 3071976 -186207578 - AluSq/x SINE Alu -194 119 1 1956 219 96 57 chr6 3072037 3072218 -186207336 + L1MDa LINE L1 4455 4627 -1913 2309 90 0 0 chr6 3072218 3072530 -186207024 + AluSq SINE Alu 1 312 -1 1956 219 96 57 chr6 3072530 3073120 -186206434 + L1MDa LINE L1 4627 5256 -1284 231 36 0 0 chr6 3073141 3073169 -186206385 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1538 169 22 0 chr6 3073172 3073439 -186206115 - AluJo SINE Alu -32 280 8 2317 235 17 26 chr6 3074954 3075605 -186203949 - L1M4 LINE L1 -1748 4398 3754 2203 93 23 0 chr6 3075655 3075957 -186203597 + AluSc SINE Alu 1 309 0 1739 157 14 3 chr6 3076129 3076422 -186203132 - AluJo SINE Alu -16 296 1 1717 216 176 7 chr6 3077974 3078548 -186201006 - L1M4 LINE L1 -1612 4534 3864 886 174 0 0 chr6 3078552 3078696 -186200858 + FAM SINE Alu 5 148 -37 1998 117 0 0 chr6 3078728 3079035 -186200519 - AluSx SINE Alu 0 307 1 298 270 92 116 chr6 3079658 3079951 -186199603 + MLT1J LTR MaLR 99 384 -127 214 211 28 37 chr6 3081917 3082026 -186197528 + (CACGC)n Simple_repeat Simple_repeat 1 108 0 2072 88 37 3 chr6 3082125 3082419 -186197135 + AluSx SINE Alu 1 304 -8 298 264 94 26 chr6 3082527 3082829 -186196725 + L1MD1 LINE L1 5815 6156 -86 2888 48 3 0 chr6 3082940 3083292 -186196262 + LTR5 LTR ERVK 1 353 -616 3139 31 0 0 chr6 3083292 3083649 -186195905 + HERVK LTR ERVK 4787 5143 -2100 2225 35 6 99 chr6 3084441 3084784 -186194770 - AluY SINE Alu 0 311 1 1384 231 24 11 chr6 3085327 3085502 -186194052 - L1MB4 LINE L1 -1 6179 6005 2276 205 53 37 chr6 3085502 3086584 -186192970 - L1MC4 LINE L1 -461 5719 4863 274 131 229 0 chr6 3086595 3086656 -186192898 - L1M4c LINE L1 -4858 1526 1452 14424 126 40 18 chr6 3086659 3088107 -186191447 + Tigger1 DNA MER2_type 1 1416 -1002 2023 102 0 0 chr6 3088107 3088451 -186191103 + AluSq SINE Alu 1 344 0 14424 126 40 18 chr6 3088451 3088864 -186190690 + Tigger1 DNA MER2_type 1416 1818 -600 2250 105 0 0 chr6 3088864 3089170 -186190384 + AluSx SINE Alu 1 306 -6 14424 126 40 18 chr6 3089170 3089349 -186190205 + Tigger1 DNA MER2_type 1818 1992 -426 2433 57 0 0 chr6 3089349 3089648 -186189906 + AluY SINE Alu 1 299 -12 14424 126 40 18 chr6 3089648 3089970 -186189584 + Tigger1 DNA MER2_type 1992 2418 0 2715 168 14 89 chr6 3089970 3090665 -186188889 + L1MB8 LINE L1 5531 6173 -5 28 0 0 0 chr6 3090665 3090693 -186188861 + AT_rich Low_complexity Low_complexity 1 28 0 2165 101 7 0 chr6 3090693 3090999 -186188555 - AluSg SINE Alu -2 308 1 662 218 70 0 chr6 3091009 3091151 -186188403 + MER96 DNA MER1_type? 23 174 -1 2439 24 0 70 chr6 3093101 3093432 -186186122 + AluY SINE Alu 1 308 -3 408 203 123 123 chr6 3094121 3094169 -186185385 + L2 LINE L2 3176 3223 -90 1981 119 34 0 chr6 3094169 3094464 -186185090 - AluSx SINE Alu -7 305 1 408 203 123 123 chr6 3094464 3094553 -186185001 + L2 LINE L2 3222 3313 0 183 357 71 12 chr6 3094560 3094644 -186184910 + L2 LINE L2 3180 3268 -4 4489 165 70 64 chr6 3094680 3095821 -186183733 - L1MC2 LINE L1 -1 6343 5199 2292 82 0 3 chr6 3095881 3096184 -186183370 - AluSq SINE Alu -11 302 1 23 33 0 0 chr6 3096192 3096222 -186183332 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr6 3097062 3097096 -186182458 + GC_rich Low_complexity Low_complexity 1 34 0 2044 99 10 3 chr6 3097871 3098173 -186181381 + AluSx SINE Alu 2 305 -7 1883 132 18 0 chr6 3098585 3098866 -186180688 - AluSg SINE Alu -19 291 6 216 368 58 0 chr6 3099084 3099171 -186180383 + MIR SINE MIR 88 179 -83 348 179 64 26 chr6 3099305 3099383 -186180171 - MLT1L LTR MaLR -532 83 3 402 233 89 33 chr6 3100367 3100547 -186179007 - L1ME4a LINE L1 -6 6115 5926 251 226 52 70 chr6 3100582 3100697 -186178857 - L1ME4a LINE L1 -284 5837 5725 199 218 164 18 chr6 3100741 3100796 -186178758 - L2 LINE L2 -52 3220 3158 310 263 11 63 chr6 3101238 3101333 -186178221 - L1MC4 LINE L1 -1339 6703 6614 * 335 243 0 107 chr6 3101276 3101379 -186178175 + L1MC4 LINE L1 6614 6705 -1337 249 147 29 15 chr6 3101380 3101448 -186178106 + (TA)n Simple_repeat Simple_repeat 1 69 0 512 226 178 0 chr6 3101467 3101613 -186177941 - MIR SINE MIR -70 192 21 1788 206 90 25 chr6 3102231 3102720 -186176834 - L1ME2 LINE L1 -53 6111 5591 2281 82 0 19 chr6 3102804 3103120 -186176434 - AluSg SINE Alu 0 310 1 734 232 12 4 chr6 3103227 3103425 -186176129 - L1ME4a LINE L1 -541 5625 5425 543 265 151 62 chr6 3103606 3104077 -186175477 - L1MEd LINE L1 -5250 869 357 373 309 20 7 chr6 3104225 3104377 -186175177 - L1MEd LINE L1 -5960 159 6 1794 144 0 39 chr6 3104527 3104839 -186174715 + AluJo SINE Alu 2 301 -11 243 0 0 0 chr6 3104840 3104867 -186174687 + (TA)n Simple_repeat Simple_repeat 1 27 0 207 88 0 0 chr6 3105668 3105702 -186173852 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 774 145 0 0 chr6 3106201 3106318 -186173236 - FLAM_A SINE Alu -6 136 20 641 171 77 0 chr6 3106365 3106482 -186173072 + AluJb SINE Alu 5 130 -182 23 33 0 0 chr6 3106823 3106853 -186172701 + AT_rich Low_complexity Low_complexity 1 30 0 1022 173 0 18 chr6 3107049 3107217 -186172337 - FRAM SINE Alu -1 165 1 2028 107 3 0 chr6 3107229 3107518 -186172036 - AluSg SINE Alu -20 290 1 271 231 249 72 chr6 3107546 3107767 -186171787 - L2 LINE L2 -177 3095 2836 470 51 17 0 chr6 3107979 3108038 -186171516 - 5S rRNA rRNA -29 92 33 225 281 271 0 chr6 3108768 3108864 -186170690 - L2 LINE L2 0 3313 3192 2401 80 3 0 chr6 3109719 3110031 -186169523 + AluSp SINE Alu 1 313 0 430 259 36 27 chr6 3111442 3111554 -186168000 + L2 LINE L2 3201 3313 0 209 295 64 26 chr6 3111737 3111815 -186167739 - L2 LINE L2 -2 3311 3231 553 325 135 43 chr6 3111881 3112732 -186166822 + L2 LINE L2 2165 3113 -159 2201 113 0 0 chr6 3112732 3113032 -186166522 - AluSc SINE Alu -9 300 1 553 325 135 43 chr6 3113032 3113119 -186166435 + L2 LINE L2 3113 3191 -81 1729 149 17 13 chr6 3113764 3113776 -186165778 - L1MB3 LINE L1 -153 6030 6020 435 179 0 11 chr6 3113776 3113871 -186165683 - L1MB3 LINE L1 -2 6181 6088 1729 149 17 13 chr6 3113871 3114159 -186165395 - L1MB3 LINE L1 -163 6020 5729 1475 193 56 3 chr6 3114283 3114589 -186164965 - L1MB3 LINE L1 -430 5812 5491 1953 241 82 29 chr6 3114605 3115131 -186164423 - MER21B LTR ERV1 -270 593 40 503 151 0 0 chr6 3115141 3115227 -186164327 - L1MDa LINE L1 -4482 2058 1973 4403 206 109 113 chr6 3115231 3115700 -186163854 - L1MDa LINE L1 -4745 1795 1326 2090 65 61 0 chr6 3115700 3115978 -186163576 - AluY SINE Alu -16 295 1 4403 206 109 113 chr6 3115978 3116860 -186162694 - L1MDa LINE L1 -5214 1326 361 629 167 0 0 chr6 3116860 3116950 -186162604 - 5S rRNA rRNA -31 90 1 4403 206 109 113 chr6 3116950 3117310 -186162244 - L1MDa LINE L1 -6179 361 1 22 70 0 0 chr6 3117659 3117702 -186161852 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 3118536 3118557 -186160997 + AT_rich Low_complexity Low_complexity 1 21 0 850 276 15 15 chr6 3118560 3118901 -186160653 + L1MC/D LINE L1 2337 2677 -3469 763 264 113 27 chr6 3121796 3122126 -186157428 + L1MC/D LINE L1 2688 3081 -3065 180 0 0 0 chr6 3122126 3122146 -186157408 + (TA)n Simple_repeat Simple_repeat 2 21 0 763 264 113 27 chr6 3122146 3122338 -186157216 + L1MC/D LINE L1 3081 3255 -2891 1381 186 29 14 chr6 3122349 3122624 -186156930 + AluJo SINE Alu 25 303 -9 1740 287 80 27 chr6 3122624 3123392 -186156162 + L1MC/D LINE L1 3245 4074 -2072 1732 161 28 3 chr6 3123392 3123683 -186155871 - AluJb SINE Alu -14 298 1 1740 287 80 27 chr6 3123683 3123870 -186155684 + L1MC/D LINE L1 4074 4250 -1896 459 244 65 30 chr6 3123894 3124095 -186155459 + L1MC/D LINE L1 4402 4609 -1537 2256 101 0 0 chr6 3124096 3124404 -186155150 - AluY SINE Alu -3 308 1 2083 102 0 0 chr6 3124409 3124716 -186154838 - AluSx SINE Alu 0 307 1 1242 270 49 36 chr6 3124766 3125296 -186154258 + L1MC/D LINE L1 4621 5157 -989 35 41 0 0 chr6 3125337 3125386 -186154168 + AT_rich Low_complexity Low_complexity 1 49 0 501 267 53 25 chr6 3125416 3125459 -186154095 + L1MC/D LINE L1 5156 5196 -1009 1395 156 84 11 chr6 3125459 3125745 -186153809 + AluJo SINE Alu 1 305 0 501 267 53 25 chr6 3125745 3125996 -186153558 + L1MC/D LINE L1 5196 5471 -734 417 314 69 5 chr6 3126024 3126228 -186153326 + L1MC4a LINE L1 4491 4707 -1439 358 251 81 8 chr6 3126282 3126624 -186152930 - LTR16A LTR ERVL -2 448 1 615 298 133 29 chr6 3126762 3126808 -186152746 + L1MC4a LINE L1 5258 5298 -823 2381 77 0 0 chr6 3126808 3127119 -186152435 + AluY SINE Alu 1 311 0 615 298 133 29 chr6 3127119 3127673 -186151881 + L1MC4a LINE L1 5298 5545 -576 1775 146 3 11 chr6 3127685 3127972 -186151582 + AluSx SINE Alu 1 285 -27 2134 106 7 7 chr6 3128137 3128438 -186151116 - AluSx SINE Alu -11 301 1 22 88 0 0 chr6 3128481 3128538 -186151016 + AT_rich Low_complexity Low_complexity 1 57 0 1297 164 126 0 chr6 3128550 3128819 -186150735 + AluJb SINE Alu 1 303 -9 867 209 0 17 chr6 3128854 3129031 -186150523 + FRAM SINE Alu 1 174 -2 267 225 152 29 chr6 3129176 3129314 -186150240 + L1ME4a LINE L1 5964 6118 -3 2727 175 50 27 chr6 3129315 3129704 -186149850 - L1MB4 LINE L1 0 6180 5802 2019 129 31 20 chr6 3129704 3130061 -186149493 + MER46B DNA MER2_type 1 236 0 2727 175 50 27 chr6 3130061 3130151 -186149403 - L1MB4 LINE L1 -378 5802 5716 1990 86 31 14 chr6 3130151 3130441 -186149113 - AluSx SINE Alu -17 295 1 2727 175 50 27 chr6 3130441 3130832 -186148722 - L1MB4 LINE L1 -464 5716 5336 1727 136 0 14 chr6 3130832 3131112 -186148442 - AluSx SINE Alu -1 311 36 2727 175 50 27 chr6 3131112 3131626 -186147928 - L1MB4 LINE L1 -844 5336 4669 369 368 12 6 chr6 3132098 3132269 -186147285 - L2 LINE L2 -1673 1641 1470 293 242 182 15 chr6 3132267 3132399 -186147155 + MIR SINE MIR 69 222 -40 * 2096 101 21 0 chr6 3132410 3132697 -186146857 - AluSx SINE Alu -19 293 1 2109 120 0 3 chr6 3134514 3134813 -186144741 + AluSx SINE Alu 1 298 -14 2142 86 6 32 chr6 3134820 3135133 -186144421 + AluSg SINE Alu 1 305 -5 351 256 26 51 chr6 3135146 3135263 -186144291 - L2 LINE L2 -31 3282 3169 451 305 73 11 chr6 3135744 3135921 -186143633 + MIR3 SINE MIR 20 207 -1 223 222 111 74 chr6 3136112 3136193 -186143361 + MIR SINE MIR 179 262 0 250 304 82 44 chr6 3136606 3136741 -186142813 - L2 LINE L2 -4 3309 3170 3677 164 37 17 chr6 3137171 3137750 -186141804 - L1MB3 LINE L1 0 6183 5585 2258 79 7 7 chr6 3137750 3138053 -186141501 - AluSx SINE Alu -9 303 1 3677 164 37 17 chr6 3138053 3138198 -186141356 - L1MB3 LINE L1 -598 5585 5444 554 243 35 7 chr6 3138649 3138793 -186140761 + MIR SINE MIR 105 252 -10 1046 216 25 0 chr6 3139067 3139271 -186140283 - MER58A DNA MER1_type -15 209 1 353 263 0 114 chr6 3140009 3140074 -186139480 + MER91A DNA MER1_type 88 136 -60 1784 148 3 29 chr6 3140074 3140384 -186139170 - AluJo SINE Alu -10 302 1 353 263 0 114 chr6 3140384 3140432 -186139122 + MER91A DNA MER1_type 136 188 -8 746 141 8 8 chr6 3141048 3141169 -186138385 - FLAM_C SINE Alu -21 122 2 905 167 51 65 chr6 3142235 3142451 -186137103 - MER20 DNA MER1_type 0 219 7 21 0 0 0 chr6 3142706 3142727 -186136827 + AT_rich Low_complexity Low_complexity 1 21 0 1380 176 0 12 chr6 3143474 3143719 -186135835 + AluJo SINE Alu 1 242 -70 470 269 57 14 chr6 3143891 3144032 -186135522 + MIR SINE MIR 72 218 -44 2251 95 0 0 chr6 3144118 3144412 -186135142 + AluSq SINE Alu 2 295 -18 3771 173 30 12 chr6 3145039 3145763 -186133791 - L1MB3 LINE L1 -5 6178 5442 246 186 29 88 chr6 3146129 3146231 -186133323 + (CGGGG)n Simple_repeat Simple_repeat 2 97 0 198 339 121 16 chr6 3146652 3146776 -186132778 - MIR3 SINE MIR -52 156 20 362 292 53 0 chr6 3146908 3147021 -186132533 - MER5A DNA MER1_type -7 182 64 2104 95 7 3 chr6 3147584 3147880 -186131674 - AluSq SINE Alu -16 297 1 263 208 47 36 chr6 3148491 3148624 -186130930 + MIR SINE MIR 36 206 -56 1960 116 0 58 chr6 3148834 3149162 -186130392 - AluSc SINE Alu 0 309 1 2381 68 0 3 chr6 3149563 3149855 -186129699 + AluY SINE Alu 21 311 0 1707 118 45 0 chr6 3150889 3151176 -186128378 - L1MA5A LINE L1 0 6297 5998 391 243 0 0 chr6 3151623 3151697 -186127857 + MER81 DNA DNA 3 76 -38 1969 156 9 0 chr6 3151997 3152330 -186127224 + MER2 DNA MER2_type 10 345 0 2174 115 14 0 chr6 3152595 3152890 -186126664 - AluSx SINE Alu -13 299 1 23 0 0 0 chr6 3153790 3153813 -186125741 + AT_rich Low_complexity Low_complexity 1 23 0 945 175 0 12 chr6 3154132 3154298 -186125256 - AluSc SINE Alu -11 298 135 2009 81 7 61 chr6 3154301 3154597 -186124957 - AluSx SINE Alu -13 299 20 365 263 101 86 chr6 3155035 3155366 -186124188 - L1ME4a LINE L1 -3 6118 5778 2308 117 0 0 chr6 3155366 3155664 -186123890 - AluSg SINE Alu -12 298 1 365 263 101 86 chr6 3155664 3155750 -186123804 - L1ME4a LINE L1 -343 5778 5695 340 327 159 10 chr6 3155750 3155958 -186123596 - L1ME LINE L1 -408 5762 5524 818 188 0 7 chr6 3157073 3157211 -186122343 + AluJb SINE Alu 137 273 -39 2227 110 3 3 chr6 3157351 3157652 -186121902 - AluSp SINE Alu -12 301 1 592 168 0 34 chr6 3158149 3158268 -186121286 + MER58 DNA MER1_type 2305 2419 -1 263 303 122 45 chr6 3158498 3158874 -186120680 + L2 LINE L2 1537 1941 -1373 1950 149 3 19 chr6 3160096 3160411 -186119143 + AluJb SINE Alu 3 312 0 606 281 86 34 chr6 3161334 3161658 -186117896 - L1ME4a LINE L1 -467 5695 5355 1980 143 6 19 chr6 3161974 3162149 -186117405 - AluJb SINE Alu -2 310 139 2544 50 10 0 chr6 3162149 3162447 -186117107 - AluY SINE Alu -10 301 1 1980 143 6 19 chr6 3162447 3162585 -186116969 - AluJb SINE Alu -173 139 1 284 297 49 30 chr6 3162876 3163164 -186116390 - L1MEc LINE L1 -4819 1651 1268 372 345 0 9 chr6 3163185 3163295 -186116259 - L1MEc LINE L1 -5030 1342 1234 303 327 19 31 chr6 3163300 3163462 -186116092 - L1MEc LINE L1 -5398 974 815 181 350 0 0 chr6 3164084 3164144 -186115410 - L2 LINE L2 -8 3264 3205 300 213 110 39 chr6 3164588 3164715 -186114839 - L2 LINE L2 -1 3271 3136 188 368 26 0 chr6 3164778 3164854 -186114700 - L2 LINE L2 -337 2976 2899 1959 137 7 10 chr6 3165571 3165863 -186113691 - AluSc SINE Alu -18 291 1 423 293 98 45 chr6 3166548 3166794 -186112760 + MIR SINE MIR 4 262 0 196 265 29 15 chr6 3166865 3166933 -186112621 + MIR SINE MIR 193 261 -1 227 319 118 0 chr6 3167228 3167363 -186112191 - MIR SINE MIR -70 192 42 335 287 10 0 chr6 3167760 3167861 -186111693 - MIR3 SINE MIR -12 196 95 2182 103 0 10 chr6 3168921 3169213 -186110341 - AluSc SINE Alu -20 289 1 216 322 92 26 chr6 3169302 3169454 -186110100 - MIR SINE MIR -44 218 57 2042 107 4 4 chr6 3169746 3170043 -186109511 + AluSq SINE Alu 14 310 0 729 235 39 0 chr6 3170426 3170605 -186108949 - MLT1B LTR MaLR -204 186 1 2419 85 7 0 chr6 3170858 3171163 -186108391 - AluY SINE Alu -4 307 1 2095 132 6 28 chr6 3171169 3171488 -186108066 - AluJo SINE Alu 0 312 1 200 263 7 0 chr6 3171884 3172036 -186107518 + (TTCGGG)n Simple_repeat Simple_repeat 6 158 0 213 252 0 0 chr6 3172080 3172215 -186107339 + (TTCGGG)n Simple_repeat Simple_repeat 6 140 0 496 278 10 0 chr6 3172241 3172978 -186106576 + (TTCGGG)n Simple_repeat Simple_repeat 1 744 0 371 277 9 0 chr6 3173024 3173502 -186106052 + (TTCGGG)n Simple_repeat Simple_repeat 1 482 0 471 284 18 0 chr6 3173582 3173751 -186105803 + (TTCGGG)n Simple_repeat Simple_repeat 5 176 0 236 276 35 23 chr6 3173783 3173870 -186105684 + MIR SINE MIR 105 192 -70 1288 186 5 0 chr6 3173913 3174134 -186105420 + AluJb SINE Alu 85 306 -6 810 183 0 20 chr6 3174272 3174425 -186105129 - FRAM SINE Alu -4 172 23 1860 196 21 75 chr6 3174456 3174976 -186104578 - MLT2B1 LTR ERVL -11 509 18 577 278 24 24 chr6 3175849 3176018 -186103536 - MIR SINE MIR 0 262 94 2165 100 14 0 chr6 3176476 3176778 -186102776 - AluSx SINE Alu 0 306 1 186 227 0 0 chr6 3177715 3177759 -186101795 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 1913 164 9 25 chr6 3179594 3179911 -186099643 + AluJo SINE Alu 1 312 0 583 274 0 0 chr6 3183903 3184027 -186095527 + FLAM_A SINE Alu 1 124 -9 478 312 64 86 chr6 3184030 3184062 -186095492 - MER92A LTR ERV1 -14 398 367 2473 79 7 0 chr6 3184062 3184367 -186095187 + AluSp SINE Alu 5 311 -2 478 312 64 86 chr6 3184367 3184741 -186094813 - MER92A LTR ERV1 -45 367 1 3379 137 6 4 chr6 3185888 3186401 -186093153 - MER75 DNA T2_type 0 514 1 619 360 45 11 chr6 3187171 3187457 -186092097 + MER115 DNA AcHobo 89 384 -309 776 263 105 25 chr6 3187457 3187742 -186091812 + MER77 LTR ERV1 290 597 -8 1301 267 68 32 chr6 3187826 3188298 -186091256 + MER77-int LTR ERV1 2 490 -3701 * 1464 237 23 66 chr6 3188288 3188462 -186091092 + MER77-int LTR ERV1 1218 1398 -2793 2392 116 0 0 chr6 3188462 3188772 -186090782 - AluSx SINE Alu -2 310 1 1464 237 23 66 chr6 3188772 3189036 -186090518 + MER77-int LTR ERV1 1398 1637 -2554 5132 227 52 30 chr6 3189115 3190448 -186089106 + MER77-int LTR ERV1 1631 2993 -1198 679 96 0 0 chr6 3190765 3190859 -186088695 - AluSx SINE Alu -10 302 209 2208 95 7 0 chr6 3191467 3191751 -186087803 - AluSx SINE Alu -22 290 5 4674 167 52 17 chr6 3192218 3193052 -186086502 - MER21B LTR ERV1 0 863 1 1707 121 20 154 chr6 3193483 3193971 -186085583 + MER4A LTR ERV1 1 423 -241 530 255 13 20 chr6 3193983 3194132 -186085422 + MER4C LTR ERV1 276 423 -42 290 250 13 26 chr6 3194129 3194205 -186085349 + MER4C LTR ERV1 389 463 -2 * 766 103 0 8 chr6 3194289 3194406 -186085148 - AluSp/q SINE Alu 0 313 198 1563 97 141 7 chr6 3194406 3194675 -186084879 + LTR7 LTR ERV1 9 313 -137 15579 158 17 33 chr6 3194675 3197944 -186081610 + HERVH LTR ERV1 982 4232 -2297 4512 132 173 23 chr6 3197952 3199317 -186080237 + pTR5 LTR ERV1 740 2438 0 6248 106 9 2 chr6 3199321 3200230 -186079324 + HERVH LTR ERV1 4235 5149 -2564 1342 146 0 0 chr6 3200231 3200451 -186079103 + HERVH LTR ERV1 5600 5819 -1894 * 2147 87 82 14 chr6 3200449 3200816 -186078738 + HERVH LTR ERV1 7322 7713 0 2817 83 95 5 chr6 3200816 3201227 -186078327 + LTR7 LTR ERV1 1 448 -2 1586 101 5 0 chr6 3201229 3201437 -186078117 - AluSx SINE Alu -103 209 1 917 213 0 0 chr6 3201442 3201611 -186077943 - FRAM SINE Alu -7 169 1 2374 90 0 0 chr6 3201752 3202062 -186077492 + AluY SINE Alu 1 310 -1 256 297 14 0 chr6 3202084 3202158 -186077396 - L3 LINE CR1 -75 1502 1428 500 291 30 44 chr6 3202186 3202389 -186077165 - MIR SINE MIR -50 212 13 238 164 36 36 chr6 3202390 3202445 -186077109 + MLT1E3 LTR MaLR 1 55 -569 2810 125 57 13 chr6 3202445 3203034 -186076520 - MER4B LTR ERV1 0 779 1 1269 246 53 59 chr6 3203034 3203556 -186075998 + MLT1E3 LTR MaLR 52 652 -2 365 309 62 16 chr6 3203582 3203825 -186075729 - LTR16C LTR ERVL -5 486 233 2187 123 0 0 chr6 3205117 3205425 -186074129 - AluSx SINE Alu -4 308 1 333 47 0 0 chr6 3205697 3205740 -186073814 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1921 70 0 31 chr6 3205740 3205997 -186073557 - AluY SINE Alu -26 285 37 2271 59 0 0 chr6 3206536 3206808 -186072746 + AluY SINE Alu 1 272 -39 185 156 0 22 chr6 3208267 3208312 -186071242 + (CCCCAG)n Simple_repeat Simple_repeat 3 46 0 342 0 0 0 chr6 3209249 3209287 -186070267 + (TG)n Simple_repeat Simple_repeat 2 39 0 692 243 27 14 chr6 3209397 3209619 -186069935 + MER33 DNA MER1_type 5 229 -95 212 318 148 0 chr6 3209695 3209783 -186069771 - MIR SINE MIR -99 163 63 2389 62 0 3 chr6 3210059 3210363 -186069191 + AluY SINE Alu 1 303 -8 189 262 49 0 chr6 3210951 3211012 -186068542 + MIR SINE MIR 59 122 -86 23 0 0 0 chr6 3212283 3212306 -186067248 + AT_rich Low_complexity Low_complexity 1 23 0 1394 141 38 0 chr6 3212476 3212689 -186066865 - AluSg/x SINE Alu -14 296 76 956 248 56 0 chr6 3213182 3213416 -186066138 + MIR SINE MIR 15 261 -1 268 123 0 35 chr6 3213432 3213489 -186066065 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 23 0 0 0 chr6 3213994 3214017 -186065537 + GC_rich Low_complexity Low_complexity 1 23 0 43 97 0 0 chr6 3314633 3314767 -185964787 + GC_rich Low_complexity Low_complexity 1 134 0 294 338 214 33 chr6 3317676 3318289 -185961265 - L3 LINE CR1 -2 1575 852 1937 136 0 26 chr6 3318551 3318861 -185960693 - AluJo SINE Alu 0 312 11 1550 168 25 50 chr6 3318950 3319372 -185960182 - Tigger5 DNA MER2_type 0 2323 1 224 0 65 0 chr6 3319612 3319643 -185959911 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2117 128 3 0 chr6 3319685 3319981 -185959573 + AluSx SINE Alu 1 297 -15 2471 74 0 0 chr6 3320577 3320874 -185958680 + AluSg SINE Alu 1 297 -13 1050 282 96 23 chr6 3321161 3321747 -185957807 - L1MC4a LINE L1 -297 5824 5266 363 314 84 58 chr6 3321768 3321994 -185957560 - L1MC4a LINE L1 -908 5238 5007 249 57 0 0 chr6 3322261 3322296 -185957258 + (TCTCCC)n Simple_repeat Simple_repeat 3 37 0 2345 80 0 6 chr6 3322388 3322699 -185956855 + AluY SINE Alu 1 309 -2 822 202 52 31 chr6 3322744 3322937 -185956617 - MER63A DNA MER1_type -2 208 12 2454 79 0 13 chr6 3322979 3323284 -185956270 + AluSx SINE Alu 1 301 -11 2509 88 0 0 chr6 3323294 3323602 -185955952 + AluY SINE Alu 1 308 -3 467 301 33 99 chr6 3323634 3323996 -185955558 - L2 LINE L2 -25 3247 2910 282 290 23 76 chr6 3324036 3324167 -185955387 - L2 LINE L2 -513 2801 2678 287 287 174 0 chr6 3324825 3324940 -185954614 - MIR3 SINE MIR -44 164 30 199 258 81 97 chr6 3325166 3325290 -185954264 + L2 LINE L2 2638 2759 -555 211 264 80 55 chr6 3325328 3325529 -185954025 + L2 LINE L2 2836 3041 -231 2310 90 3 7 chr6 3325682 3325981 -185953573 + AluSx SINE Alu 1 298 -14 190 293 146 24 chr6 3325999 3326122 -185953432 + MIR SINE MIR 46 183 -79 382 179 0 0 chr6 3327887 3327954 -185951600 - MER45 DNA AcHobo 0 1581 1515 2289 192 51 2 chr6 3328738 3329207 -185950347 - L1MB3 LINE L1 -2 6181 5690 1852 157 42 37 chr6 3330252 3330455 -185949099 - MLT1B LTR MaLR -6 384 177 2474 76 0 3 chr6 3330455 3330756 -185948798 - AluSg SINE Alu -10 300 1 1852 157 42 37 chr6 3330756 3330934 -185948620 - MLT1B LTR MaLR -213 177 1 196 302 19 0 chr6 3331126 3331179 -185948375 + L2 LINE L2 2720 2773 -541 225 114 139 101 chr6 3331792 3331871 -185947683 + MER5B DNA MER1_type 21 102 -76 870 145 18 84 chr6 3331875 3332102 -185947452 + MER20 DNA MER1_type 8 219 0 1380 103 0 0 chr6 3333262 3333436 -185946118 + AluSq SINE Alu 129 302 -11 21 0 0 0 chr6 3333622 3333643 -185945911 + AT_rich Low_complexity Low_complexity 1 21 0 2355 78 0 38 chr6 3333674 3333994 -185945560 - AluY SINE Alu -3 308 1 240 233 0 17 chr6 3334604 3334664 -185944890 - L2 LINE L2 -14 3299 3241 2043 102 62 0 chr6 3334956 3335231 -185944323 + AluSq SINE Alu 3 294 -19 1698 158 80 19 chr6 3335335 3335696 -185943858 - MLT1B LTR MaLR 0 390 8 464 299 0 22 chr6 3335979 3336116 -185943438 + G-rich Low_complexity Low_complexity 3 136 0 2205 101 17 0 chr6 3336768 3337056 -185942498 - AluSg SINE Alu -17 293 1 216 0 0 0 chr6 3337057 3337081 -185942473 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2176 94 7 0 chr6 3337081 3337357 -185942197 - AluSx SINE Alu -34 278 1 1001 269 134 5 chr6 3337365 3337782 -185941772 - L1ME2 LINE L1 0 6164 5694 304 314 122 17 chr6 3339181 3339353 -185940201 + MIR SINE MIR 14 203 -59 2487 99 3 0 chr6 3340293 3340605 -185938949 - AluSp SINE Alu 0 313 1 2878 133 58 0 chr6 3341330 3341826 -185937728 - L1MB3 LINE L1 -10 6173 5649 429 218 0 0 chr6 3342429 3342516 -185937038 - MER103 DNA DNA -45 121 35 23 0 0 0 chr6 3342694 3342717 -185936837 + AT_rich Low_complexity Low_complexity 1 23 0 321 354 82 10 chr6 3344125 3344331 -185935223 - MIR SINE MIR -26 236 16 186 143 0 0 chr6 3344699 3344734 -185934820 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 283 290 75 37 chr6 3345095 3345202 -185934352 + MIR SINE MIR 42 152 -56 403 301 74 25 chr6 3345575 3345738 -185933816 + MIR SINE MIR 86 256 -6 2604 60 7 0 chr6 3345806 3346107 -185933447 + AluY SINE Alu 1 303 -8 31 26 0 0 chr6 3346257 3346295 -185933259 + AT_rich Low_complexity Low_complexity 1 38 0 191 286 0 0 chr6 3346448 3346497 -185933057 - L2 LINE L2 -76 3237 3189 1149 230 0 9 chr6 3346497 3346723 -185932831 - MER58A DNA MER1_type 0 224 1 209 146 21 0 chr6 3347762 3347810 -185931744 + CT-rich Low_complexity Low_complexity 2 50 0 283 272 41 35 chr6 3349683 3349852 -185929702 - L1ME4a LINE L1 0 6121 5952 562 272 32 10 chr6 3349893 3350175 -185929379 - L1ME4a LINE L1 -251 5870 5541 2028 156 16 0 chr6 3350260 3350567 -185928987 - AluSx SINE Alu 0 312 1 212 287 111 37 chr6 3351390 3351498 -185928056 - L2 LINE L2 -614 2700 2585 256 167 26 64 chr6 3351556 3351634 -185927920 - LTR33A LTR ERVL -9 514 440 198 280 0 32 chr6 3352090 3352183 -185927371 - L2 LINE L2 -738 2576 2487 181 385 0 51 chr6 3352345 3352423 -185927131 + L3b LINE CR1 1503 1576 -7 635 239 31 6 chr6 3353694 3353853 -185925701 - MER5A DNA MER1_type -26 163 1 642 266 74 29 chr6 3356232 3356476 -185923078 - MIR SINE MIR 0 262 8 207 0 0 0 chr6 3356645 3356668 -185922886 + (T)n Simple_repeat Simple_repeat 1 23 0 501 283 0 7 chr6 3358167 3358312 -185921242 + LTR33 LTR ERVL 367 510 -11 1792 213 82 25 chr6 3358312 3358790 -185920764 - MLT1D LTR MaLR 0 505 1 348 289 72 62 chr6 3358911 3359105 -185920449 - MIR SINE MIR -44 218 23 915 197 118 9 chr6 3359752 3359980 -185919574 - L1MB8 LINE L1 0 6178 5926 197 273 0 0 chr6 3360827 3360871 -185918683 + MIR3 SINE MIR 117 160 -48 355 313 44 6 chr6 3362710 3362870 -185916684 + MER117 DNA MER1_type 1 166 -31 1197 181 59 0 chr6 3363212 3363416 -185916138 - MER58A DNA MER1_type -8 216 1 333 118 0 0 chr6 3364812 3364863 -185914691 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr6 3365165 3365186 -185914368 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 3365744 3365774 -185913780 + AT_rich Low_complexity Low_complexity 1 30 0 2052 99 7 17 chr6 3366109 3366411 -185913143 - AluSg SINE Alu -11 299 1 259 393 27 0 chr6 3367395 3367507 -185912047 + MIR SINE MIR 33 147 -61 192 351 84 15 chr6 3369043 3369245 -185910309 - L2 LINE L2 -544 2770 2555 192 311 67 25 chr6 3369441 3369560 -185909994 - L2 LINE L2 -935 2379 2256 317 107 58 223 chr6 3369961 3370024 -185909530 - L1MB4 LINE L1 0 6180 6145 2167 111 13 0 chr6 3370024 3370330 -185909224 - AluSx SINE Alu -2 310 1 317 107 58 223 chr6 3370330 3370387 -185909167 - L1MB4 LINE L1 -35 6145 6080 277 286 77 16 chr6 3370705 3370831 -185908723 + MIR SINE MIR 34 162 -46 2245 78 7 3 chr6 3371212 3371505 -185908049 + AluSq SINE Alu 1 294 -19 1686 166 3 16 chr6 3372327 3372634 -185906920 - AluJo SINE Alu -1 311 9 189 0 0 0 chr6 3372914 3372935 -185906619 + (A)n Simple_repeat Simple_repeat 1 21 0 292 263 19 113 chr6 3373737 3373897 -185905657 - MIR SINE MIR -1 261 117 330 246 228 0 chr6 3374080 3374194 -185905360 - MIR SINE MIR -41 221 82 3689 127 93 63 chr6 3374198 3374814 -185904740 - LTR1 LTR ERV1 0 785 140 2097 95 41 0 chr6 3374814 3375109 -185904445 - AluSc SINE Alu -2 307 1 3689 127 93 63 chr6 3375109 3375242 -185904312 - LTR1 LTR ERV1 -645 140 13 258 330 0 10 chr6 3376664 3376767 -185902787 - L2 LINE L2 -527 2787 2686 644 245 57 10 chr6 3377859 3378051 -185901503 + MER3 DNA MER1_type 1 201 -8 1598 280 167 17 chr6 3378090 3378951 -185900603 + L2 LINE L2 1744 2733 -581 294 221 139 25 chr6 3378962 3379084 -185900470 - MLT1J LTR MaLR 0 511 376 750 274 135 0 chr6 3379120 3379350 -185900204 - MLT1J LTR MaLR -250 261 1 498 309 88 62 chr6 3379457 3379842 -185899712 + L2 LINE L2 2919 3313 0 234 242 81 0 chr6 3379925 3379987 -185899567 - MIR3 SINE MIR -10 198 132 * 410 353 64 5 chr6 3379978 3380165 -185899389 + L3 LINE CR1 403 600 -977 3127 158 19 73 chr6 3381958 3382094 -185897460 - L1MB3 LINE L1 -3 6180 6038 2192 108 0 0 chr6 3382094 3382401 -185897153 - AluSq SINE Alu -3 310 4 3127 158 19 73 chr6 3382401 3383019 -185896535 - L1MB3 LINE L1 -145 6038 5467 241 226 0 0 chr6 3383057 3383110 -185896444 + (CATTT)n Simple_repeat Simple_repeat 4 56 0 1865 231 104 29 chr6 3383679 3384238 -185895316 - L1MD3 LINE L1 -21 7974 7374 198 319 52 9 chr6 3384625 3384741 -185894813 + MIR SINE MIR 33 153 -55 2865 161 38 21 chr6 3385811 3385858 -185893696 - L1MB3 LINE L1 -4 6179 6134 1847 156 0 10 chr6 3385858 3386159 -185893395 - AluSx SINE Alu -14 298 1 2865 161 38 21 chr6 3386159 3386669 -185892885 - L1MB3 LINE L1 -49 6134 5613 269 355 89 23 chr6 3387444 3387658 -185891896 + L2 LINE L2 2683 2910 -404 363 271 126 37 chr6 3388126 3388320 -185891234 - L1ME3A LINE L1 -204 5960 5754 1125 215 42 0 chr6 3388584 3388798 -185890756 - MER58A DNA MER1_type -1 223 1 476 301 47 28 chr6 3389620 3389833 -185889721 - MIR SINE MIR -26 236 20 877 307 65 3 chr6 3390383 3390692 -185888862 + MLT1I LTR MaLR 82 409 0 192 179 0 0 chr6 3391402 3391441 -185888113 + (CA)n Simple_repeat Simple_repeat 1 39 0 2493 64 0 3 chr6 3392431 3392744 -185886810 + AluSq SINE Alu 1 312 -1 1221 192 42 0 chr6 3394119 3394333 -185885221 - MER58A DNA MER1_type -1 223 1 192 267 67 44 chr6 3394664 3394754 -185884800 + L2 LINE L2 3222 3313 0 913 227 96 9 chr6 3397293 3397522 -185882032 + MIR SINE MIR 3 251 -11 431 136 19 29 chr6 3397686 3397789 -185881765 + CT-rich Low_complexity Low_complexity 2 103 0 2839 180 39 2 chr6 3397903 3398443 -185881111 - MER68 LTR ERV1 0 562 3 694 251 72 43 chr6 3399234 3399397 -185880157 + MIR SINE MIR 21 195 -67 727 157 51 56 chr6 3399397 3399575 -185879979 + MER104 DNA MER2_type 1 177 -3 694 251 72 43 chr6 3399575 3399646 -185879908 + MIR SINE MIR 195 262 0 412 324 63 0 chr6 3399701 3399843 -185879711 - MIR SINE MIR -52 210 60 1122 213 102 22 chr6 3399851 3400166 -185879388 + MER58B DNA MER1_type 1 340 -1 189 182 0 0 chr6 3400235 3400268 -185879286 + L2 LINE L2 3272 3304 -9 2253 92 0 0 chr6 3401686 3401981 -185877573 - AluSx SINE Alu -17 295 1 295 195 104 26 chr6 3403709 3403786 -185875768 + MIR SINE MIR 66 148 -114 271 277 161 0 chr6 3404851 3404981 -185874573 - MIR SINE MIR -32 230 80 2492 86 0 13 chr6 3405028 3405341 -185874213 - AluSg SINE Alu -1 309 1 2359 109 0 10 chr6 3406040 3406353 -185873201 - AluSx SINE Alu -2 310 1 250 357 27 32 chr6 3406968 3407153 -185872401 + MIR SINE MIR 33 216 -46 2369 93 6 3 chr6 3408957 3409268 -185870286 - AluSx SINE Alu 0 312 1 234 224 66 40 chr6 3409305 3409381 -185870173 + MER103 DNA DNA 56 133 -33 1634 138 41 3 chr6 3411099 3411418 -185868136 - L1MB3 LINE L1 0 6183 5853 2337 198 8 25 chr6 3411479 3411990 -185867564 - L1MB3 LINE L1 -328 5855 5354 3309 182 9 12 chr6 3412643 3413308 -185866246 - L1MB1 LINE L1 -1 6167 5505 252 0 0 0 chr6 3414305 3414333 -185865221 + (T)n Simple_repeat Simple_repeat 1 28 0 181 221 52 52 chr6 3414516 3414593 -185864961 + MIR SINE MIR 125 201 -61 212 128 0 21 chr6 3415388 3415435 -185864119 + (CCCCCT)n Simple_repeat Simple_repeat 3 48 0 323 296 0 0 chr6 3418966 3419064 -185860490 + (TG)n Simple_repeat Simple_repeat 1 98 0 585 199 0 0 chr6 3419082 3419253 -185860301 + (TG)n Simple_repeat Simple_repeat 2 172 0 1137 220 49 70 chr6 3420860 3421205 -185858349 - MER58B DNA MER1_type 0 341 4 466 209 147 63 chr6 3421210 3421401 -185858153 - MER112 DNA MER1_type -1 259 53 261 262 64 78 chr6 3423319 3423460 -185856094 - L2 LINE L2 -76 3237 3099 315 241 93 65 chr6 3424390 3424498 -185855056 + L1ME4a LINE L1 5927 6037 -84 23 33 0 0 chr6 3424923 3424953 -185854601 + AT_rich Low_complexity Low_complexity 1 30 0 2309 103 0 0 chr6 3425121 3425413 -185854141 - AluSg SINE Alu -16 294 3 264 59 0 0 chr6 3426875 3426909 -185852645 + (CA)n Simple_repeat Simple_repeat 2 35 0 300 302 60 19 chr6 3429271 3429536 -185850018 - L1MC4 LINE L1 -1 8041 7766 1691 104 146 0 chr6 3430131 3430391 -185849163 + AluSx SINE Alu 1 298 -14 310 266 179 39 chr6 3430474 3430703 -185848851 - L2 LINE L2 -61 3252 2992 1708 222 182 27 chr6 3430711 3431189 -185848365 - LTR12 LTR ERV1 0 714 163 1850 146 110 55 chr6 3431200 3431673 -185847881 - pTR5 LTR ERV1 -1197 1241 743 1586 121 9 9 chr6 3431695 3431918 -185847636 - AluSx SINE Alu -37 275 53 5420 138 287 36 chr6 3433529 3434886 -185844668 - pTR5 LTR ERV1 0 2438 742 555 318 23 17 chr6 3435026 3435199 -185844355 - L2 LINE L2 0 3272 3099 246 190 17 0 chr6 3435303 3435361 -185844193 + MER5A DNA MER1_type 48 106 -83 225 317 77 19 chr6 3435638 3435742 -185843812 + MIR SINE MIR 108 217 -45 2336 111 0 0 chr6 3435792 3436090 -185843464 - AluSc SINE Alu -11 298 1 222 305 29 48 chr6 3436969 3437074 -185842480 - MIR SINE MIR -60 202 100 21 82 0 0 chr6 3437181 3437230 -185842324 + AT_rich Low_complexity Low_complexity 1 49 0 2138 125 0 7 chr6 3437377 3437674 -185841880 - AluSx SINE Alu -17 295 1 2350 104 0 0 chr6 3438172 3438471 -185841083 - AluSc SINE Alu -8 301 3 2967 156 17 13 chr6 3438880 3438898 -185840656 - LTR45 LTR ERV1 -2 523 507 2371 101 59 0 chr6 3438898 3439254 -185840300 - MER51B LTR ERV1 0 377 1 2967 156 17 13 chr6 3439254 3439756 -185839798 - LTR45 LTR ERV1 -18 507 1 23 0 0 0 chr6 3440666 3440689 -185838865 + GC_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr6 3441139 3441184 -185838370 + GC_rich Low_complexity Low_complexity 1 45 0 30 45 0 0 chr6 3441268 3441312 -185838242 + GC_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr6 3442138 3442166 -185837388 + GC_rich Low_complexity Low_complexity 1 28 0 261 284 52 26 chr6 3443435 3443551 -185836003 + L3 LINE CR1 1178 1296 -281 296 264 66 36 chr6 3444559 3444726 -185834828 + LTR50 LTR ERVL 320 672 -32 929 233 197 46 chr6 3444966 3445769 -185833785 - L2 LINE L2 -3 3310 2346 302 369 87 34 chr6 3447304 3447510 -185832044 + MIR SINE MIR 16 232 -30 2212 108 0 10 chr6 3447883 3448188 -185831366 + AluSx SINE Alu 8 309 -3 497 195 188 0 chr6 3452386 3452535 -185827019 - MER53 DNA DNA -7 182 6 255 69 0 155 chr6 3453815 3453873 -185825681 - MADE1 DNA Mariner -1 79 31 22 0 0 0 chr6 3454081 3454103 -185825451 + AT_rich Low_complexity Low_complexity 1 22 0 3273 152 20 0 chr6 3456970 3457529 -185822025 - L1MA6 LINE L1 -1 6299 5730 1614 109 31 97 chr6 3457529 3457786 -185821768 - L1MA6 LINE L1 -1263 4883 4653 1739 160 87 0 chr6 3457786 3458073 -185821481 - AluJb SINE Alu 0 312 1 1614 109 31 97 chr6 3458073 3458165 -185821389 - L1MA6 LINE L1 -1493 4653 4557 184 255 0 0 chr6 3458692 3458739 -185820815 + L3 LINE CR1 781 827 -750 1472 286 42 25 chr6 3460724 3461323 -185818231 + L1MC4a LINE L1 7072 7680 -128 484 192 233 17 chr6 3461824 3461996 -185817558 - MIR SINE MIR -14 248 40 269 311 44 0 chr6 3464157 3464247 -185815307 - MIR3 SINE MIR -11 197 104 1699 87 79 0 chr6 3464480 3464732 -185814822 + L1PB2 LINE L1 5878 6149 -2 300 269 46 28 chr6 3468795 3468903 -185810651 + L2 LINE L2 3204 3313 0 21 36 0 0 chr6 3470218 3470246 -185809308 + AT_rich Low_complexity Low_complexity 1 28 0 652 262 51 33 chr6 3471065 3471398 -185808156 - Charlie8 DNA MER1_type -2141 276 78 7889 147 81 64 chr6 3471547 3473317 -185806237 + pTR5 LTR ERV1 65 2424 -14 2326 185 43 13 chr6 3474021 3474552 -185805002 - MER74A LTR ERVL -4 554 8 1528 188 4 15 chr6 3476196 3476468 -185803086 - AluJo SINE Alu -14 298 30 505 267 125 11 chr6 3476472 3476648 -185802906 - L2 LINE L2 -1047 2267 2072 594 292 42 17 chr6 3476775 3477011 -185802543 - L2 LINE L2 -1230 2084 1843 1002 265 138 19 chr6 3477011 3477547 -185802007 - L1MC4a LINE L1 -1690 6118 5519 325 292 42 33 chr6 3477552 3477672 -185801882 - L1MC/D LINE L1 -2046 5762 5642 326 240 53 59 chr6 3477728 3478008 -185801546 - MLT1H LTR MaLR 0 549 229 249 211 0 18 chr6 3478121 3478178 -185801376 - MLT1H LTR MaLR -488 61 6 22 0 0 0 chr6 3478442 3478464 -185801090 + AT_rich Low_complexity Low_complexity 1 22 0 271 305 0 24 chr6 3478946 3479028 -185800526 - L2 LINE L2 -17 3255 3176 249 340 19 10 chr6 3479498 3479601 -185799953 + L2 LINE L2 3207 3310 -3 221 233 0 0 chr6 3480382 3480425 -185799129 + CT-rich Low_complexity Low_complexity 4 46 0 333 0 0 0 chr6 3480428 3480465 -185799089 + (CA)n Simple_repeat Simple_repeat 2 38 0 971 164 13 6 chr6 3480580 3480739 -185798815 - AluJb SINE Alu -19 293 134 2214 121 3 6 chr6 3481066 3481380 -185798174 - AluSq SINE Alu 0 313 1 1077 76 8 0 chr6 3481383 3481515 -185798039 - AluSq/x SINE Alu -179 133 1 667 304 65 5 chr6 3481568 3481785 -185797769 + MIR SINE MIR 2 231 -31 321 331 99 36 chr6 3483048 3483350 -185796204 - L2 LINE L2 -43 3229 2909 1380 189 34 34 chr6 3483412 3483703 -185795851 + AluJo SINE Alu 1 291 -21 344 345 31 11 chr6 3484919 3485110 -185794444 + L2 LINE L2 727 921 -2393 310 221 9 124 chr6 3485130 3485243 -185794311 + L1MC4 LINE L1 6607 6706 -1336 * 344 300 0 11 chr6 3485185 3485275 -185794279 - L1MC4 LINE L1 -1340 6702 6614 4440 190 54 37 chr6 3485288 3486793 -185792761 - L1MB3 LINE L1 -6 6177 4627 287 278 268 20 chr6 3486799 3486997 -185792557 + L2 LINE L2 923 1169 -2145 233 378 0 0 chr6 3487032 3487114 -185792440 - MIR SINE MIR 0 262 181 601 329 133 16 chr6 3487122 3487624 -185791930 + L2 LINE L2 1165 1725 -1589 959 310 64 37 chr6 3487627 3488298 -185791256 + L2 LINE L2 2328 3015 -257 2193 140 65 0 chr6 3488312 3488684 -185790870 - MSTA LTR MaLR 0 428 33 895 98 379 15 chr6 3488684 3488887 -185790667 + LTR12 LTR ERV1 6 282 -432 338 242 11 0 chr6 3488894 3488985 -185790569 + LTR30 LTR ERV1 552 643 -79 682 106 10 0 chr6 3488985 3489089 -185790465 + LTR12 LTR ERV1 480 584 -130 206 329 13 26 chr6 3489288 3489364 -185790190 + L2 LINE L2 3179 3253 -19 215 274 6 0 chr6 3489930 3490105 -185789449 + (CA)n Simple_repeat Simple_repeat 2 177 0 2476 200 58 97 chr6 3490422 3491178 -185788376 - MER50 LTR ERV1 -7 727 1 418 246 136 93 chr6 3491359 3491595 -185787959 - MIR SINE MIR 0 262 17 248 222 111 0 chr6 3491792 3491846 -185787708 + MER91A DNA MER1_type 123 182 -14 220 324 155 7 chr6 3491867 3492009 -185787545 + L2 LINE L2 3104 3266 -6 464 337 79 0 chr6 3492300 3492478 -185787076 + MIR SINE MIR 47 238 -24 206 184 102 0 chr6 3492842 3492891 -185786663 + L2 LINE L2 3012 3065 -248 1926 251 66 45 chr6 3492938 3493325 -185786229 - MER21B LTR ERV1 -124 739 329 3006 157 46 4 chr6 3493325 3493829 -185785725 + LTR45 LTR ERV1 1 525 0 1926 251 66 45 chr6 3493829 3494151 -185785403 - MER21B LTR ERV1 -534 329 15 363 299 45 19 chr6 3494171 3494328 -185785226 + L2 LINE L2 3120 3280 -33 3532 67 25 2 chr6 3494372 3494847 -185784707 - LTR19A LTR ERV1 0 486 1 30 27 0 0 chr6 3496445 3496482 -185783072 + AT_rich Low_complexity Low_complexity 1 37 0 625 116 87 43 chr6 3497046 3497184 -185782370 - L1MA4 LINE L1 -6 6294 6151 736 96 37 30 chr6 3497184 3497267 -185782287 + L1MA4 LINE L1 6032 6118 -182 2196 166 22 49 chr6 3497267 3497505 -185782049 - Tigger2a DNA MER2_type -2274 434 212 1856 184 0 3 chr6 3497505 3497798 -185781756 + AluJo SINE Alu 5 296 -16 2196 166 22 49 chr6 3497798 3498004 -185781550 - Tigger2a DNA MER2_type -2496 212 2 736 96 37 30 chr6 3498004 3498055 -185781499 + L1MA4 LINE L1 6118 6167 -133 2461 250 43 11 chr6 3498061 3498766 -185780788 - L1MC4a LINE L1 0 7808 7082 2075 92 64 27 chr6 3499728 3500023 -185779531 - AluSc SINE Alu -3 306 1 1874 231 97 24 chr6 3500065 3500645 -185778909 - L1MD3 LINE L1 -856 7139 6518 2323 89 0 0 chr6 3500667 3500958 -185778596 + AluY SINE Alu 1 291 -20 2652 39 0 13 chr6 3501491 3501802 -185777752 - AluY SINE Alu -4 307 1 341 285 68 50 chr6 3502339 3502854 -185776700 + L1MEd LINE L1 680 1203 -4916 318 301 47 25 chr6 3503001 3503237 -185776317 + L1MEd LINE L1 1376 1616 -4513 429 296 91 61 chr6 3503326 3504003 -185775551 + L1MEd LINE L1 1791 2533 -3596 1824 220 97 14 chr6 3505041 3505578 -185773976 + MLT1F1 LTR MaLR 1 567 0 250 262 63 87 chr6 3505717 3505843 -185773711 + L2 LINE L2 3140 3262 -10 1154 165 29 25 chr6 3505981 3506223 -185773331 + L1ME1 LINE L1 5808 6050 -116 305 281 22 0 chr6 3507005 3507094 -185772460 + MIR SINE MIR 117 207 -55 79 70 0 0 chr6 3507499 3507655 -185771899 + AT_rich Low_complexity Low_complexity 1 156 0 2131 99 11 3 chr6 3507719 3508002 -185771552 - AluSp SINE Alu -26 287 3 201 74 0 0 chr6 3508786 3508813 -185770741 + (CAATT)n Simple_repeat Simple_repeat 2 28 0 1412 193 24 17 chr6 3509764 3510087 -185769467 + L1MD3 LINE L1 7577 7995 0 395 381 55 25 chr6 3510399 3510803 -185768751 + L3 LINE CR1 114 529 -1048 1650 203 27 63 chr6 3510808 3511385 -185768169 + L1MB7 LINE L1 5792 6334 0 748 121 0 0 chr6 3511735 3511851 -185767703 + L1MA7 LINE L1 6159 6274 -17 582 338 103 11 chr6 3512536 3512903 -185766651 - LTR33A LTR ERVL -56 467 67 2248 233 26 6 chr6 3513892 3514433 -185765121 - L1M4 LINE L1 -1776 4370 3819 38741 84 12 7 chr6 3514549 3520669 -185758885 + L1PA6 LINE L1 11 6154 0 540 224 82 35 chr6 3521970 3522140 -185757414 + MER5B DNA MER1_type 1 178 0 288 350 10 0 chr6 3522181 3522281 -185757273 - MER81 DNA DNA -13 101 1 339 280 26 90 chr6 3522295 3522484 -185757070 - MER5B DNA MER1_type 0 178 2 926 158 0 23 chr6 3522542 3522713 -185756841 + MER5A DNA MER1_type 23 189 0 188 299 164 28 chr6 3523071 3523199 -185756355 + MIR SINE MIR 5 165 -97 393 22 0 0 chr6 3523199 3523245 -185756309 + (TAA)n Simple_repeat Simple_repeat 2 47 0 188 299 164 28 chr6 3523245 3523293 -185756261 + MIR SINE MIR 165 205 -57 7093 236 129 18 chr6 3523374 3523651 -185755903 - L1ME LINE L1 -634 5528 5283 212 59 29 0 chr6 3523651 3523685 -185755869 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 7093 236 129 18 chr6 3523685 3526228 -185753326 - L1ME LINE L1 -879 5283 2389 306 234 96 0 chr6 3526309 3526403 -185753151 - MIR SINE MIR -70 192 90 187 323 0 0 chr6 3528272 3528337 -185751217 - MIR SINE MIR -40 222 158 392 317 47 27 chr6 3528894 3529307 -185750247 + LTR67 LTR ERVL 24 522 -35 188 278 83 53 chr6 3529345 3529478 -185750076 - MIR SINE MIR -116 146 10 1515 211 95 91 chr6 3529785 3530513 -185749041 - L1MC5 LINE L1 -32 7929 7199 601 224 41 61 chr6 3530514 3530710 -185748844 + MER106A DNA MER1_type 2 193 -43 348 276 23 0 chr6 3531555 3531642 -185747912 - MIR SINE MIR -104 158 70 207 127 0 0 chr6 3531676 3531718 -185747836 - MIR SINE MIR -62 146 105 227 277 145 0 chr6 3532641 3532724 -185746830 - L2 LINE L2 -28 3285 3191 432 300 57 45 chr6 3532857 3533104 -185746450 + MIR SINE MIR 13 262 0 1226 226 84 45 chr6 3534180 3534561 -185744993 + MSTD LTR MaLR 1 396 0 304 310 35 44 chr6 3534644 3534847 -185744707 + L2 LINE L2 2885 3085 -187 579 285 124 24 chr6 3535372 3535621 -185743933 + MLT1L LTR MaLR 1 274 -341 433 256 89 28 chr6 3535734 3535914 -185743640 + MLT1L LTR MaLR 421 611 -4 799 187 238 51 chr6 3535940 3536255 -185743299 + MLT1A2 LTR MaLR 1 374 0 270 0 0 0 chr6 3536841 3536871 -185742683 + (TG)n Simple_repeat Simple_repeat 2 31 0 203 161 0 0 chr6 3537571 3537602 -185741952 + A-rich Low_complexity Low_complexity 5 35 0 213 330 54 18 chr6 3538510 3538622 -185740932 + L2 LINE L2 3153 3268 -4 378 285 93 0 chr6 3539009 3539160 -185740394 + MLT1L LTR MaLR 451 615 0 2327 109 24 24 chr6 3539255 3539630 -185739924 - THE1C LTR MaLR 0 375 1 3456 182 44 4 chr6 3539704 3540387 -185739167 + L1MB2 LINE L1 5460 6169 -2 631 199 93 9 chr6 3540678 3540861 -185738693 + MER20 DNA MER1_type 15 212 -7 440 279 93 0 chr6 3541145 3541285 -185738269 + MER3 DNA MER1_type 57 209 0 182 91 30 0 chr6 3541487 3541520 -185738034 + CT-rich Low_complexity Low_complexity 4 37 0 2336 78 113 0 chr6 3542943 3543278 -185736276 - MER51B LTR ERV1 -4 373 1 533 286 57 50 chr6 3543278 3543558 -185735996 - MLT1J LTR MaLR -1 510 229 2419 100 0 0 chr6 3544159 3544469 -185735085 + AluY SINE Alu 1 310 -1 2416 86 0 7 chr6 3544690 3544993 -185734561 + AluSx SINE Alu 1 301 -11 376 265 163 21 chr6 3545048 3545380 -185734174 - HAL1 LINE L1 -120 2387 2009 3810 239 49 23 chr6 3545858 3546310 -185733244 + MER45B DNA AcHobo 1 440 -1141 2619 48 0 6 chr6 3546310 3546623 -185732931 - AluY SINE Alu 0 311 1 3810 239 49 23 chr6 3546623 3546791 -185732763 + MER45B DNA AcHobo 440 602 -979 2150 106 7 3 chr6 3546791 3547109 -185732445 + AluSg SINE Alu 1 319 0 3810 239 49 23 chr6 3547109 3547491 -185732063 + MER45B DNA AcHobo 602 1032 -8 198 118 0 0 chr6 3548440 3548474 -185731080 + (A)n Simple_repeat Simple_repeat 1 34 0 4330 177 24 21 chr6 3549743 3549792 -185729762 - L1MB3 LINE L1 -2 6181 6134 2125 80 0 4 chr6 3549792 3550055 -185729499 - AluY SINE Alu -22 289 28 4330 177 24 21 chr6 3550055 3550892 -185728662 - L1MB3 LINE L1 -49 6134 5293 5169 152 43 6 chr6 3550911 3551825 -185727729 - L1MA8 LINE L1 -21 6270 5323 2134 184 0 13 chr6 3551833 3552224 -185727330 - L1MA8 LINE L1 -1779 4367 3982 2364 109 3 0 chr6 3552519 3552830 -185726724 + AluSx SINE Alu 1 312 0 2155 255 94 41 chr6 3552853 3554218 -185725336 - L1ME3A LINE L1 -34 6136 4699 846 193 59 5 chr6 3554444 3554631 -185724923 - L1MB4 LINE L1 -2 6178 5982 1891 166 3 7 chr6 3556013 3556309 -185723245 + AluJo SINE Alu 1 295 -17 336 322 76 6 chr6 3557308 3557479 -185722075 - MIR SINE MIR 0 262 80 431 332 68 14 chr6 3557511 3557731 -185721823 - L1MC4a LINE L1 -1910 5898 5667 248 278 0 0 chr6 3557731 3557821 -185721733 + L1MC4 LINE L1 6614 6703 -1339 * 273 239 0 22 chr6 3557787 3557879 -185721675 - L1MC4 LINE L1 -1339 6703 6614 336 346 32 43 chr6 3557896 3557986 -185721568 - L1MC4a LINE L1 -473 5648 5559 2814 188 26 6 chr6 3557986 3558530 -185721024 - L1MB5 LINE L1 -7 6167 5613 336 346 32 43 chr6 3558530 3558715 -185720839 - L1MC4a LINE L1 -562 5559 5420 233 310 14 0 chr6 3558741 3558812 -185720742 + MLT1L LTR MaLR 4 75 -540 289 295 69 42 chr6 3558867 3559069 -185720485 + MER20B DNA MER1_type 5 215 -4 1063 262 144 63 chr6 3559080 3559703 -185719851 - MER21B LTR ERV1 -167 696 23 245 338 0 0 chr6 3559733 3559804 -185719750 + MLT1J1 LTR MaLR 71 141 -305 302 237 72 10 chr6 3560022 3560119 -185719435 + MLT1L LTR MaLR 513 615 0 431 276 32 42 chr6 3560119 3560430 -185719124 - L1MC4a LINE L1 -752 5394 5087 4060 158 29 10 chr6 3560491 3561182 -185718372 + MER44D DNA MER2_type 2 705 0 515 305 110 13 chr6 3561292 3561528 -185718026 - MIR SINE MIR 0 262 4 2282 74 10 0 chr6 3561635 3561931 -185717623 + AluSx SINE Alu 1 299 -13 2046 218 35 29 chr6 3562125 3562612 -185716942 - MER74A LTR ERVL -46 512 23 2242 67 0 20 chr6 3562800 3563100 -185716454 - AluY SINE Alu -17 294 1 450 267 79 12 chr6 3563138 3563303 -185716251 + MLT1K LTR MaLR 389 564 -24 317 288 161 0 chr6 3564990 3565108 -185714446 - MIR SINE MIR -101 161 25 1698 144 0 0 chr6 3565463 3565733 -185713821 + AluJb SINE Alu 16 285 -27 332 83 73 0 chr6 3565752 3565848 -185713706 + (TA)n Simple_repeat Simple_repeat 1 103 0 300 277 36 0 chr6 3565876 3565959 -185713595 - L1MC4 LINE L1 -1333 6709 6624 518 157 0 0 chr6 3567206 3567289 -185712265 - MER53 DNA DNA 0 189 107 343 270 11 11 chr6 3567679 3567768 -185711786 - MER5A DNA MER1_type -83 106 18 230 109 0 219 chr6 3567833 3567897 -185711657 + MLT1B LTR MaLR 1 50 -340 1090 156 29 10 chr6 3567904 3568109 -185711445 + MLT1B LTR MaLR 182 390 0 2107 179 47 38 chr6 3568974 3569389 -185710165 + L1MB3 LINE L1 5711 6132 -51 2090 112 3 0 chr6 3569389 3569683 -185709871 + AluSq SINE Alu 1 295 -18 2107 179 47 38 chr6 3569683 3569736 -185709818 + L1MB3 LINE L1 6132 6183 0 2337 94 0 0 chr6 3570579 3570887 -185708667 + AluSp SINE Alu 1 308 -5 494 194 31 70 chr6 3571953 3572082 -185707472 - MER112 DNA MER1_type -9 251 128 250 222 19 0 chr6 3572135 3572189 -185707365 + MER4-int LTR ERV1 1111 1165 -5433 297 206 29 0 chr6 3572217 3572319 -185707235 + (TG)n Simple_repeat Simple_repeat 2 106 0 243 0 0 0 chr6 3572444 3572471 -185707083 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 1662 115 13 0 chr6 3572471 3572706 -185706848 - AluSx SINE Alu -32 280 43 1304 164 5 5 chr6 3574225 3574445 -185705109 + AluJo SINE Alu 73 292 -20 26 30 0 0 chr6 3575459 3575492 -185704062 + AT_rich Low_complexity Low_complexity 1 33 0 526 199 12 24 chr6 3577669 3577835 -185701719 + CT-rich Low_complexity Low_complexity 1 164 0 244 67 0 44 chr6 3578001 3578046 -185701508 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 1071 212 104 34 chr6 3578058 3578327 -185701227 - AluJo SINE Alu -13 289 2 978 191 27 45 chr6 3578346 3578566 -185700988 - MER20 DNA MER1_type -2 217 2 242 313 40 30 chr6 3578811 3578910 -185700644 + MIR SINE MIR 16 115 -93 5558 55 7 0 chr6 3578912 3579597 -185699957 - L1PA8 LINE L1 0 6172 5483 436 349 99 71 chr6 3580503 3580867 -185698687 - L2 LINE L2 -9 3263 2890 2127 112 0 7 chr6 3580983 3581287 -185698267 + AluSg SINE Alu 1 302 -8 363 325 21 5 chr6 3581507 3581698 -185697856 - L2 LINE L2 -824 2490 2297 274 308 143 0 chr6 3582115 3582206 -185697348 - L2 LINE L2 -20 3252 3149 922 44 0 0 chr6 3582207 3582320 -185697234 + AluY SINE Alu 183 295 -16 236 236 153 42 chr6 3583045 3583117 -185696437 - L2 LINE L2 -26 3246 3167 1450 177 18 201 chr6 3584845 3585573 -185693981 - MER45R DNA AcHobo -983 598 4 365 39 20 0 chr6 3586535 3586586 -185692968 + (TG)n Simple_repeat Simple_repeat 1 52 0 24 0 0 0 chr6 3587208 3587232 -185692322 + AT_rich Low_complexity Low_complexity 1 24 0 200 321 24 0 chr6 3587360 3587444 -185692110 + (TATG)n Simple_repeat Simple_repeat 1 86 0 2494 173 19 17 chr6 3588268 3588731 -185690823 - MLT2C2 LTR ERVL 0 464 1 16901 189 42 79 chr6 3588916 3592449 -185687105 + L1M2 LINE L1 8 3544 -3304 1237 209 17 30 chr6 3592449 3592751 -185686803 + AluJo SINE Alu 13 310 -2 16901 189 42 79 chr6 3592751 3594624 -185684930 + L1M2 LINE L1 3544 5483 -1365 1791 118 24 3 chr6 3594629 3594917 -185684637 + L1MA4A LINE L1 6006 6299 -4 671 288 123 5 chr6 3594931 3595150 -185684404 + MIR SINE MIR 5 249 -13 230 316 45 7 chr6 3596995 3597150 -185682404 + (CATATA)n Simple_repeat Simple_repeat 6 166 0 207 211 0 0 chr6 3597824 3597862 -185681692 + L2 LINE L2 3230 3267 -5 498 321 87 11 chr6 3597927 3598158 -185681396 + MIR SINE MIR 11 262 0 312 305 169 7 chr6 3598731 3598885 -185680669 - MER5A DNA MER1_type -4 185 7 23 0 0 0 chr6 3599166 3599189 -185680365 + AT_rich Low_complexity Low_complexity 1 23 0 226 345 54 40 chr6 3600583 3600731 -185678823 + MIR3 SINE MIR 19 168 -40 391 294 7 7 chr6 3600979 3601132 -185678422 + L1MEc LINE L1 1519 1671 -4725 336 299 56 0 chr6 3601133 3601240 -185678314 + L2 LINE L2 2624 2736 -578 22 0 0 0 chr6 3601287 3601309 -185678245 + AT_rich Low_complexity Low_complexity 1 22 0 1833 247 18 26 chr6 3601309 3601644 -185677910 - L1ME1 LINE L1 -12 6154 5823 2117 115 0 3 chr6 3601644 3601956 -185677598 - AluSq SINE Alu -2 311 1 1833 247 18 26 chr6 3601956 3602110 -185677444 - L1ME1 LINE L1 -343 5823 5669 610 267 10 61 chr6 3602126 3602401 -185677153 + L2 LINE L2 2748 3009 -304 277 306 209 0 chr6 3602481 3602615 -185676939 + MER5A DNA MER1_type 22 183 -6 402 240 20 89 chr6 3602622 3602768 -185676786 + L2 LINE L2 3142 3277 -36 467 270 8 0 chr6 3603862 3603988 -185675566 + MER103 DNA DNA 4 130 -36 735 142 0 108 chr6 3604035 3604183 -185675371 - FLAM_A SINE Alu -1 132 1 2066 120 7 3 chr6 3604512 3604812 -185674742 - AluSx SINE Alu -11 301 1 1712 184 70 6 chr6 3605071 3605414 -185674140 + MLT1A1 LTR MaLR 1 365 0 2706 214 72 89 chr6 3606454 3607119 -185672435 + L1MC5 LINE L1 6578 7211 -750 222 37 0 0 chr6 3607119 3607146 -185672408 + (GA)n Simple_repeat Simple_repeat 1 27 0 2706 214 72 89 chr6 3607146 3607841 -185671713 + L1MC5 LINE L1 7211 7916 -45 292 185 146 54 chr6 3608184 3608314 -185671240 - MIR SINE MIR -55 207 66 252 0 0 0 chr6 3609427 3609455 -185670099 + (GA)n Simple_repeat Simple_repeat 1 28 0 257 278 131 25 chr6 3609550 3609795 -185669759 + HAL1b LINE L1 313 583 -765 300 281 61 0 chr6 3609799 3609913 -185669641 + HAL1b LINE L1 617 737 -611 348 304 147 16 chr6 3610172 3610662 -185668892 + L1 LINE L1 4058 4611 -1535 225 244 58 12 chr6 3610937 3611023 -185668531 + L1 LINE L1 4943 5032 -1114 894 254 123 28 chr6 3611151 3611510 -185668044 - MLT1L LTR MaLR -16 599 207 265 279 196 6 chr6 3611978 3612157 -185667397 + L1ME LINE L1 5577 5789 -332 610 197 213 6 chr6 3612398 3612581 -185666973 - L1ME2 LINE L1 -1 6163 5943 184 321 0 0 chr6 3613003 3613056 -185666498 - L2 LINE L2 -81 3191 3139 2599 58 0 6 chr6 3614697 3615010 -185664544 + AluY SINE Alu 1 311 0 216 258 247 0 chr6 3615017 3615114 -185664440 + MIR SINE MIR 61 181 -81 2208 96 4 0 chr6 3616424 3616705 -185662849 - AluSq SINE Alu -18 295 14 2412 75 7 0 chr6 3618503 3618810 -185660744 + AluY SINE Alu 1 309 -2 203 281 22 52 chr6 3618997 3619132 -185660422 + L2 LINE L2 2967 3097 -216 231 189 0 0 chr6 3619198 3619251 -185660303 + (CA)n Simple_repeat Simple_repeat 2 54 0 239 294 103 46 chr6 3619276 3619470 -185660084 + L2 LINE L2 3095 3299 -14 268 297 89 10 chr6 3620227 3620328 -185659226 + MIR SINE MIR 44 152 -56 1225 75 149 11 chr6 3620328 3620502 -185659052 + AluJo SINE Alu 91 288 -24 191 203 219 0 chr6 3620551 3620615 -185658939 + MIR SINE MIR 89 166 -96 458 186 207 21 chr6 3621327 3621467 -185658087 + MER5A DNA MER1_type 24 189 0 267 180 41 25 chr6 3622931 3623053 -185656501 + GA-rich Low_complexity Low_complexity 2 125 0 242 222 14 14 chr6 3623064 3623136 -185656418 + GA-rich Low_complexity Low_complexity 2 73 0 196 319 9 26 chr6 3623290 3623403 -185656151 + L2 LINE L2 2630 2740 -574 265 150 0 0 chr6 3623409 3623449 -185656105 + Tigger3(Golem) DNA MER2_type 2989 3028 -1 194 304 0 14 chr6 3623676 3623745 -185655809 + MIR SINE MIR 189 256 -6 283 312 85 60 chr6 3624653 3625256 -185654298 + L1ME4a LINE L1 5282 5899 -222 704 254 59 21 chr6 3625256 3625574 -185653980 - HsTC2 DNA Tc2 0 1898 1283 295 223 11 53 chr6 3625585 3625679 -185653875 - HsTC2 DNA Tc2 -1796 102 13 634 192 52 159 chr6 3625737 3626045 -185653509 + MER21B LTR ERV1 23 297 -566 2113 169 60 0 chr6 3626150 3626552 -185653002 - MSTB LTR MaLR 0 426 1 354 98 0 0 chr6 3627230 3627281 -185652273 + (CA)n Simple_repeat Simple_repeat 1 51 0 1083 283 28 12 chr6 3627603 3627925 -185651629 + MLT1G1 LTR MaLR 63 389 -206 2338 112 80 39 chr6 3628176 3628481 -185651073 - MSTA LTR MaLR 0 428 100 2418 59 3 31 chr6 3628481 3628801 -185650753 + AluY SINE Alu 1 311 0 2338 112 80 39 chr6 3628801 3628906 -185650648 - MSTA LTR MaLR -328 100 1 327 25 0 0 chr6 3629646 3629686 -185649868 + (CA)n Simple_repeat Simple_repeat 2 41 0 2174 193 24 39 chr6 3629739 3630274 -185649280 + MER74A LTR ERVL 2 528 -30 264 173 0 0 chr6 3630307 3630359 -185649195 + L2 LINE L2 3259 3310 -3 520 261 30 18 chr6 3630490 3630655 -185648899 + MIR SINE MIR 78 244 -18 243 0 0 0 chr6 3631664 3631691 -185647863 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 408 191 0 0 chr6 3631760 3631844 -185647710 + (TGGA)n Simple_repeat Simple_repeat 2 85 0 260 172 16 78 chr6 3632264 3632328 -185647226 + MLT1J LTR MaLR 3 62 -449 239 113 19 0 chr6 3632328 3632381 -185647173 + A-rich Low_complexity Low_complexity 1 54 0 324 231 33 11 chr6 3632465 3632556 -185646998 + MLT1J LTR MaLR 418 510 -1 247 209 0 0 chr6 3632705 3632748 -185646806 - MARNA DNA Mariner -78 508 466 * 595 311 40 20 chr6 3632742 3632993 -185646561 + MARNA DNA Mariner 131 386 -200 195 129 0 0 chr6 3633753 3633784 -185645770 + (T)n Simple_repeat Simple_repeat 1 31 0 262 355 0 28 chr6 3633786 3633927 -185645627 + L1MD2 LINE L1 202 338 -6202 335 250 11 11 chr6 3634158 3634250 -185645304 + L1MD2 LINE L1 808 899 -5631 1551 154 104 48 chr6 3634522 3634878 -185644676 - L1MC3 LINE L1 -64 7721 7346 3999 190 43 29 chr6 3634883 3635778 -185643776 - L1MB5 LINE L1 -9 6165 5266 1593 224 26 28 chr6 3635769 3636039 -185643515 - L1MA9 LINE L1 -38 6274 6004 * 369 0 0 0 chr6 3636039 3636080 -185643474 + (CA)n Simple_repeat Simple_repeat 2 42 0 1593 224 26 28 chr6 3636080 3636233 -185643321 - L1MA9 LINE L1 -308 6004 5852 * 1632 214 12 3 chr6 3636232 3636578 -185642976 - L1MB5 LINE L1 -867 5279 4931 402 185 0 0 chr6 3636858 3636939 -185642615 + (TCCA)n Simple_repeat Simple_repeat 1 81 0 956 251 3 38 chr6 3637043 3637334 -185642220 - L1MB5 LINE L1 -2427 3719 3439 1368 228 24 19 chr6 3637340 3637833 -185641721 + L1MD2 LINE L1 1020 1515 -5028 635 166 0 93 chr6 3637907 3637934 -185641620 + AluJo SINE Alu 9 37 -275 2384 74 10 7 chr6 3637934 3638233 -185641321 - AluY SINE Alu -11 300 1 635 166 0 93 chr6 3638233 3638344 -185641210 + AluJo SINE Alu 37 134 -178 2323 253 24 28 chr6 3638345 3639271 -185640283 + L1MD2 LINE L1 2401 3275 -3265 * 5238 217 46 33 chr6 3639270 3642051 -185637503 + L1MD2 LINE L1 3237 6753 0 1285 174 0 126 chr6 3642326 3642643 -185636911 + AluJo SINE Alu 30 306 -6 1398 56 0 0 chr6 3642667 3642847 -185636707 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2424 58 0 3 chr6 3644510 3644803 -185634751 - AluY SINE Alu -18 293 2 403 130 26 0 chr6 3644866 3644943 -185634611 + CT-rich Low_complexity Low_complexity 3 81 0 354 168 76 84 chr6 3645045 3645096 -185634458 - MIR SINE MIR -61 147 97 1373 179 100 56 chr6 3645096 3645526 -185634028 - LTR7 LTR ERV1 0 450 2 354 168 76 84 chr6 3645526 3645593 -185633961 - MIR SINE MIR -111 97 30 2242 172 67 26 chr6 3646587 3647047 -185632507 + MLT2B1 LTR ERVL 1 479 -41 207 169 42 0 chr6 3647051 3647122 -185632432 + (TA)n Simple_repeat Simple_repeat 1 74 0 281 132 0 94 chr6 3647125 3647178 -185632376 + MLT2B1 LTR ERVL 350 520 0 1483 192 31 14 chr6 3647256 3647548 -185632006 - AluJo SINE Alu -15 297 1 358 309 63 29 chr6 3648013 3648220 -185631334 + L1M4 LINE L1 2200 2413 -3733 628 254 34 11 chr6 3648815 3648992 -185630562 + MIR SINE MIR 23 203 -59 569 157 52 11 chr6 3649043 3649315 -185630239 + (TAGA)n Simple_repeat Simple_repeat 1 283 0 231 170 0 0 chr6 3649323 3649370 -185630184 + GA-rich Low_complexity Low_complexity 2 48 0 1943 159 60 5 chr6 3649442 3649812 -185629742 + MLT1B LTR MaLR 1 390 0 329 325 44 10 chr6 3650594 3650797 -185628757 + LTR16C LTR ERVL 255 464 -27 306 264 94 6 chr6 3651167 3651326 -185628228 + L1MC4a LINE L1 5723 5895 -1913 2322 93 0 13 chr6 3651970 3652272 -185627282 + AluSx SINE Alu 1 298 -14 27 0 0 0 chr6 3652822 3652849 -185626705 + AT_rich Low_complexity Low_complexity 1 27 0 257 313 30 20 chr6 3653952 3654051 -185625503 - MIR SINE MIR -108 154 55 1693 73 0 0 chr6 3655645 3655864 -185623690 - L1PA8 LINE L1 0 6172 5954 555 280 73 5 chr6 3655919 3656137 -185623417 - MIR SINE MIR 0 262 30 698 277 110 31 chr6 3657623 3658006 -185621548 + LTR16A LTR ERVL 26 438 -12 962 282 51 0 chr6 3658013 3658329 -185621225 - L2 LINE L2 -1105 2209 1878 1832 186 12 129 chr6 3658440 3659027 -185620527 - MLT2B1 LTR ERVL 0 520 3 2180 164 46 0 chr6 3659444 3659817 -185619737 + MLT1B LTR MaLR 1 390 0 2554 170 15 0 chr6 3659818 3660289 -185619265 + MLT1B-int LTR MaLR 2 479 -892 302 148 49 0 chr6 3660289 3660350 -185619204 + MLT1B LTR MaLR 327 390 0 2166 157 10 20 chr6 3660749 3661143 -185618411 + L1MA8 LINE L1 5894 6283 -8 280 370 159 14 chr6 3662139 3662428 -185617126 + L2 LINE L2 2521 2851 -463 579 264 121 100 chr6 3662478 3662803 -185616751 + L2 LINE L2 2886 3222 -50 2254 182 36 77 chr6 3662803 3663336 -185616218 + MLT2B2 LTR ERVL 5 515 0 579 264 121 100 chr6 3663336 3663389 -185616165 + L2 LINE L2 3222 3272 0 230 247 156 0 chr6 3663496 3663573 -185615981 + MIR SINE MIR 108 196 -66 250 231 39 0 chr6 3663862 3663914 -185615640 - L2 LINE L2 -50 3222 3169 605 280 6 34 chr6 3663959 3664134 -185615420 - MIR SINE MIR -59 203 34 1717 167 53 35 chr6 3664433 3664693 -185614861 - MER7A DNA MER2_type -2692 346 79 2229 108 10 0 chr6 3664693 3664988 -185614566 + AluSp SINE Alu 1 298 -15 1717 167 53 35 chr6 3664988 3665068 -185614486 - MER7A DNA MER2_type -2959 79 2 1000 194 0 0 chr6 3665134 3665320 -185614234 + MER58A DNA MER1_type 29 214 -10 209 108 27 0 chr6 3666365 3666421 -185613133 + (TTG)n Simple_repeat Simple_repeat 1 57 0 269 320 20 60 chr6 3666606 3666756 -185612798 - MIR SINE MIR -20 242 99 347 229 24 0 chr6 3666758 3666841 -185612713 - LTR16C LTR ERVL -2 489 405 378 252 107 0 chr6 3667359 3667462 -185612092 + MER91C DNA MER1_type 1 114 -26 345 319 62 35 chr6 3668535 3668792 -185610762 - L2 LINE L2 -182 3090 2827 359 244 99 14 chr6 3669153 3669372 -185610182 - L1ME LINE L1 -727 5437 5197 186 331 87 27 chr6 3669536 3669720 -185609834 + L2 LINE L2 2765 2959 -355 287 222 139 0 chr6 3670280 3670352 -185609202 + MLT1J2 LTR MaLR 315 396 -54 381 221 123 16 chr6 3670482 3670604 -185608950 - L2 LINE L2 0 3272 3138 2162 129 137 11 chr6 3671044 3671424 -185608130 + MSTA LTR MaLR 1 428 0 243 284 11 42 chr6 3671935 3672030 -185607524 + MIR3 SINE MIR 111 202 -6 252 185 0 0 chr6 3672668 3672722 -185606832 + GA-rich Low_complexity Low_complexity 4 57 0 303 301 0 42 chr6 3672730 3672873 -185606681 + HAL1b LINE L1 663 799 -549 1978 193 42 20 chr6 3672876 3673326 -185606228 - MLT1C LTR MaLR 0 467 8 649 232 87 68 chr6 3673331 3673641 -185605913 + HAL1b LINE L1 799 1114 -234 209 309 52 0 chr6 3675035 3675132 -185604422 - MIR3 SINE MIR -21 187 86 352 298 6 28 chr6 3675727 3675908 -185603646 + G-rich Low_complexity Low_complexity 2 178 0 384 260 0 44 chr6 3675933 3676114 -185603440 + G-rich Low_complexity Low_complexity 2 174 0 344 354 0 17 chr6 3676156 3676410 -185603144 + G-rich Low_complexity Low_complexity 1 249 0 280 235 16 53 chr6 3676388 3676632 -185602922 + GA-rich Low_complexity Low_complexity 1 234 0 * 185 293 120 15 chr6 3676777 3676910 -185602644 - L3 LINE CR1 -117 1460 1314 189 0 0 0 chr6 3676977 3676998 -185602556 + (TG)n Simple_repeat Simple_repeat 1 21 0 1781 184 3 0 chr6 3677225 3677508 -185602046 + AluJo SINE Alu 6 289 -23 2149 105 0 11 chr6 3677515 3677800 -185601754 + AluSc SINE Alu 1 282 -27 366 23 0 0 chr6 3677801 3677844 -185601710 + (CATA)n Simple_repeat Simple_repeat 2 44 0 189 333 54 23 chr6 3678523 3678652 -185600902 + L2 LINE L2 3180 3312 -1 21 0 0 0 chr6 3678963 3678984 -185600570 + AT_rich Low_complexity Low_complexity 1 21 0 688 147 0 0 chr6 3678985 3679080 -185600474 + AluJ/FLAM SINE Alu 2 96 -216 205 167 44 44 chr6 3679100 3679190 -185600364 + (TTATA)n Simple_repeat Simple_repeat 2 91 0 383 274 60 8 chr6 3679252 3679369 -185600185 - MIR SINE MIR -1 261 139 437 344 69 12 chr6 3680625 3680872 -185598682 - LTR16A1 LTR ERVL -15 442 182 2406 126 91 2 chr6 3681009 3681405 -185598149 - MSTB1 LTR MaLR 0 432 2 411 73 0 0 chr6 3681628 3681683 -185597871 + (TC)n Simple_repeat Simple_repeat 2 56 0 270 0 0 0 chr6 3681683 3681713 -185597841 + (CA)n Simple_repeat Simple_repeat 1 30 0 351 248 85 31 chr6 3682293 3682422 -185597132 + MIR SINE MIR 120 255 -7 1989 243 47 40 chr6 3682909 3683535 -185596019 - L1MC4 LINE L1 -1 8041 7408 1268 218 45 77 chr6 3683535 3683912 -185595642 - MLT1A1 LTR MaLR 0 365 1 1989 243 47 40 chr6 3683912 3684006 -185595548 - L1MC4 LINE L1 -634 7408 7316 261 304 74 66 chr6 3684022 3684310 -185595244 + L1MC/D LINE L1 4541 4834 -1312 2228 109 10 0 chr6 3684310 3684603 -185594951 + AluSg SINE Alu 1 296 -14 261 304 74 66 chr6 3684603 3684706 -185594848 + L1MC/D LINE L1 4834 4935 -1211 231 264 0 58 chr6 3685194 3685281 -185594273 + LTR33 LTR ERVL 438 519 -2 319 333 51 39 chr6 3685284 3685518 -185594036 + L1MC/D LINE L1 5067 5303 -843 998 281 102 14 chr6 3685533 3685975 -185593579 + L1MC/D LINE L1 5317 5797 -2011 275 314 118 0 chr6 3686037 3686190 -185593364 + MIR SINE MIR 92 262 0 299 259 27 27 chr6 3686430 3686542 -185593012 + CT-rich Low_complexity Low_complexity 2 113 0 366 295 104 23 chr6 3686569 3686742 -185592812 - MIR3 SINE MIR -17 191 5 907 145 36 67 chr6 3687639 3687832 -185591722 + LTR12 LTR ERV1 1 187 -527 1089 110 74 258 chr6 3687834 3688388 -185591166 + LTR12 LTR ERV1 55 506 -208 232 253 137 11 chr6 3688393 3688488 -185591066 + MLT1I LTR MaLR 31 137 -272 302 186 0 17 chr6 3688685 3688744 -185590810 + MLT1I LTR MaLR 310 367 -42 674 250 166 73 chr6 3689377 3690050 -185589504 - HAL1 LINE L1 -124 2383 1648 507 267 47 26 chr6 3690099 3690331 -185589223 - HAL1 LINE L1 -957 1550 1314 393 315 27 0 chr6 3690623 3690734 -185588820 - MIR SINE MIR -71 191 78 195 129 0 0 chr6 3690777 3690808 -185588746 + (TTC)n Simple_repeat Simple_repeat 2 32 0 275 303 56 43 chr6 3690809 3690971 -185588583 + L1M4c LINE L1 1323 1486 -4898 2640 49 0 0 chr6 3691613 3691920 -185587634 + AluY SINE Alu 1 307 -4 1621 135 4 0 chr6 3692440 3692669 -185586885 - MER30 DNA MER1_type 0 230 1 313 255 38 38 chr6 3693040 3693146 -185586408 + MIR SINE MIR 102 207 -55 1617 180 62 36 chr6 3693686 3694022 -185585532 + MER74A LTR ERVL 125 475 -83 2068 122 0 21 chr6 3694022 3694331 -185585223 - AluSp SINE Alu 0 303 1 1617 180 62 36 chr6 3694331 3694377 -185585177 + MER74A LTR ERVL 475 518 -40 288 115 19 19 chr6 3694598 3694650 -185584904 - MLT1A2-int LTR MaLR -1679 56 5 951 198 58 133 chr6 3694650 3695050 -185584504 - MLT1A2 LTR MaLR 0 374 5 2414 86 0 13 chr6 3695258 3695572 -185583982 - AluY SINE Alu -1 310 1 507 121 38 30 chr6 3696382 3696514 -185583040 + GA-rich Low_complexity Low_complexity 4 136 0 650 148 191 37 chr6 3697024 3697134 -185582420 - MER5A DNA MER1_type -2 187 95 1516 180 15 127 chr6 3697134 3697180 -185582374 - MLT1A1 LTR MaLR 0 365 315 2231 113 7 0 chr6 3697180 3697480 -185582074 - AluSp SINE Alu -11 302 1 1516 180 15 127 chr6 3697480 3697844 -185581710 - MLT1A1 LTR MaLR -50 315 1 650 148 191 37 chr6 3697844 3697895 -185581659 - MER5A DNA MER1_type -94 95 1 681 253 78 66 chr6 3697913 3698170 -185581384 + MIR SINE MIR 2 261 -1 513 260 31 0 chr6 3698261 3698388 -185581166 + MIR3 SINE MIR 47 177 -31 297 333 101 0 chr6 3698612 3698741 -185580813 - MIR SINE MIR -70 192 51 2323 114 0 19 chr6 3698932 3699247 -185580307 - AluSg SINE Alu -1 309 1 376 220 53 0 chr6 3699701 3699722 -185579832 + MLT1B LTR MaLR 97 115 -295 1983 148 25 0 chr6 3699722 3700006 -185579548 + AluSx SINE Alu 1 291 -21 376 220 53 0 chr6 3700006 3700091 -185579463 + MLT1B LTR MaLR 115 215 -195 1500 253 107 15 chr6 3700405 3700931 -185578623 + MER90 LTR ERV1 2 575 0 1336 231 86 29 chr6 3701654 3701898 -185577656 - MLT1C LTR MaLR 0 467 238 2071 150 18 48 chr6 3701898 3702218 -185577336 + L1MA5A LINE L1 5904 6211 -86 3162 121 77 16 chr6 3702218 3702715 -185576839 - MER1A DNA MER1_type 0 527 1 2071 150 18 48 chr6 3702715 3702794 -185576760 + L1MA5A LINE L1 6211 6291 -6 1336 231 86 29 chr6 3702794 3702991 -185576563 - MLT1C LTR MaLR -229 238 1 369 183 10 87 chr6 3703068 3703172 -185576382 - MER5A DNA MER1_type -80 109 14 346 191 296 0 chr6 3703289 3703404 -185576150 - MER5B DNA MER1_type 0 178 30 22 35 0 0 chr6 3704016 3704045 -185575509 + AT_rich Low_complexity Low_complexity 1 29 0 2252 116 0 0 chr6 3704047 3704340 -185575214 + AluSx SINE Alu 1 293 -19 204 328 115 33 chr6 3704443 3704565 -185574989 + L2 LINE L2 3104 3235 -37 300 267 22 11 chr6 3704584 3704674 -185574880 + L2 LINE L2 3176 3266 -6 246 264 28 0 chr6 3705571 3705643 -185573911 - L2 LINE L2 -333 2939 2866 244 88 0 0 chr6 3706107 3706141 -185573413 - Alu SINE Alu -16 286 253 3222 144 29 10 chr6 3706232 3706821 -185572733 - L1MB3 LINE L1 -84 6099 5500 387 276 67 8 chr6 3706821 3706955 -185572599 - MER5A DNA MER1_type -37 152 11 2347 102 0 0 chr6 3707371 3707665 -185571889 + AluSx SINE Alu 1 294 -18 255 330 64 0 chr6 3708496 3708590 -185570964 + L2 LINE L2 3180 3279 -34 401 259 106 55 chr6 3709586 3709760 -185569794 - MIR SINE MIR -62 146 20 183 280 80 0 chr6 3710117 3710167 -185569387 + L2 LINE L2 3241 3294 -19 298 363 74 7 chr6 3710201 3710336 -185569218 - L2 LINE L2 -4 3268 3125 479 217 16 50 chr6 3710510 3710658 -185568896 + MER21B LTR ERV1 16 197 -408 * 1195 273 31 41 chr6 3710631 3711019 -185568535 + MER21B LTR ERV1 98 481 -382 850 244 44 44 chr6 3711073 3711347 -185568207 + MER21B LTR ERV1 465 738 -125 315 246 49 0 chr6 3711375 3711497 -185568057 - LTR33A LTR ERVL -127 394 260 1131 182 70 134 chr6 3712063 3712170 -185567384 + MLT1B LTR MaLR 1 113 -277 2169 115 0 3 chr6 3712170 3712475 -185567079 + AluSx SINE Alu 1 304 -8 1131 182 70 134 chr6 3712475 3712784 -185566770 + MLT1B LTR MaLR 113 390 0 675 126 36 0 chr6 3712784 3712895 -185566659 + MLT1A2-int LTR MaLR 1 115 -1256 * 1765 173 8 37 chr6 3712886 3713170 -185566384 + MLT1A2-int LTR MaLR 260 535 -836 1958 95 0 18 chr6 3713170 3713478 -185566076 + AluSg SINE Alu 1 303 0 1765 173 8 37 chr6 3713478 3713544 -185566010 + MLT1A2-int LTR MaLR 535 601 -770 2330 182 25 0 chr6 3713565 3713972 -185565582 + MLT1A2-int LTR MaLR 1319 1735 0 1271 269 16 22 chr6 3713972 3714343 -185565211 + MLT1A2 LTR MaLR 1 369 -5 491 293 103 33 chr6 3714343 3714585 -185564969 - L2 LINE L2 -2507 807 549 1869 143 0 51 chr6 3715295 3715609 -185563945 + MER1B DNA MER1_type 29 326 -13 209 241 316 0 chr6 3715644 3715723 -185563831 - MER5A DNA MER1_type -15 174 71 257 303 55 0 chr6 3715958 3716067 -185563487 + L1MC4a LINE L1 5176 5290 -856 403 316 85 59 chr6 3716067 3716339 -185563215 + L1MC4a LINE L1 5708 5986 -1822 1803 152 27 3 chr6 3716439 3716736 -185562818 + AluJb SINE Alu 1 304 -8 332 212 288 30 chr6 3716943 3717075 -185562479 + MER5A DNA MER1_type 9 174 -15 197 306 32 0 chr6 3717337 3717399 -185562155 + L2 LINE L2 3208 3271 -1 24 32 0 0 chr6 3717533 3717564 -185561990 + AT_rich Low_complexity Low_complexity 1 31 0 2203 101 0 0 chr6 3718023 3718320 -185561234 + AluY SINE Alu 1 297 -14 2169 105 7 0 chr6 3718493 3718799 -185560755 - AluSq SINE Alu -5 308 1 2076 89 4 0 chr6 3719148 3719482 -185560072 + AluY SINE Alu 1 335 0 342 0 0 0 chr6 3719692 3719730 -185559824 + (TG)n Simple_repeat Simple_repeat 2 39 0 352 287 38 96 chr6 3720485 3720566 -185558988 + MIR3 SINE MIR 4 88 -120 2217 108 7 0 chr6 3720566 3720872 -185558682 - AluSp SINE Alu -5 308 1 352 287 38 96 chr6 3720872 3720999 -185558555 + MIR3 SINE MIR 88 200 -8 2366 87 0 0 chr6 3721660 3721972 -185557582 + AluSx SINE Alu 1 312 0 609 279 96 21 chr6 3722350 3722630 -185556924 + MARNA DNA Mariner 175 475 -111 310 254 62 102 chr6 3723517 3723650 -185555904 + MIR SINE MIR 1 124 -138 1065 193 88 99 chr6 3723650 3724105 -185555449 - LTR7 LTR ERV1 0 450 1 310 254 62 102 chr6 3724105 3724186 -185555368 + MIR SINE MIR 124 207 -55 492 279 0 64 chr6 3724783 3724955 -185554599 - MIR SINE MIR -65 197 37 2168 96 3 0 chr6 3725156 3725449 -185554105 - AluSp SINE Alu -18 295 2 328 262 10 19 chr6 3725724 3725827 -185553727 + MLT1K LTR MaLR 479 580 -8 1957 239 79 5 chr6 3726156 3726700 -185552854 + L1ME2 LINE L1 5588 6172 -6 2142 97 3 0 chr6 3726757 3727045 -185552509 + AluSp SINE Alu 2 290 -23 186 43 0 0 chr6 3727051 3727074 -185552480 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 252 264 153 0 chr6 3727289 3727361 -185552193 - L2 LINE L2 -1 3312 3230 1921 86 30 50 chr6 3727902 3728205 -185551349 + AluSp SINE Alu 1 297 -16 2123 105 3 0 chr6 3728297 3728591 -185550963 + AluSp SINE Alu 3 297 -16 1901 155 8 137 chr6 3728634 3728958 -185550596 - MSTB LTR MaLR 0 426 184 2390 57 0 0 chr6 3728958 3729257 -185550297 - AluY SINE Alu -12 299 1 1901 155 8 137 chr6 3729257 3729421 -185550133 - MSTB LTR MaLR -242 184 1 4063 136 120 104 chr6 3729470 3730059 -185549495 - L1MC3 LINE L1 0 7785 7095 245 273 39 0 chr6 3730059 3730136 -185549418 - MLT1F1 LTR MaLR -453 114 35 4063 136 120 104 chr6 3730136 3730554 -185549000 - L1MC3 LINE L1 -690 7095 6685 270 0 0 0 chr6 3731313 3731343 -185548211 + (TG)n Simple_repeat Simple_repeat 2 31 0 2136 82 21 7 chr6 3731352 3731643 -185547911 - AluSc SINE Alu -14 295 1 287 307 128 44 chr6 3732642 3732893 -185546661 - MER102b DNA MER1_type -3 338 67 556 234 101 32 chr6 3733168 3733356 -185546198 - L2 LINE L2 0 3313 3113 303 241 13 13 chr6 3734326 3734405 -185545149 - MIR SINE MIR 0 262 184 22 0 0 0 chr6 3735798 3735820 -185543734 + GC_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr6 3735919 3735953 -185543601 + (GGA)n Simple_repeat Simple_repeat 1 34 0 26 0 0 0 chr6 3736117 3736143 -185543411 + GC_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr6 3736264 3736305 -185543249 + GC_rich Low_complexity Low_complexity 1 41 0 325 297 44 100 chr6 3836963 3837481 -185442073 + L2 LINE L2 2390 2878 -436 26 0 0 0 chr6 3838501 3838527 -185441027 + AT_rich Low_complexity Low_complexity 1 26 0 2613 201 64 47 chr6 3838927 3839002 -185440552 - MER82 DNA MER2_type -1 652 580 1801 123 0 87 chr6 3839002 3839342 -185440212 - AluSx SINE Alu 0 313 1 2613 201 64 47 chr6 3839342 3839906 -185439648 - MER82 DNA MER2_type -73 580 1 954 273 67 4 chr6 3839916 3840169 -185439385 - LTR16C LTR ERVL 0 491 223 2139 121 3 7 chr6 3840181 3840487 -185439067 - AluY SINE Alu -6 305 1 536 213 89 30 chr6 3840488 3840657 -185438897 - L1ME LINE L1 -3292 2788 2610 3072 229 71 70 chr6 3840672 3841256 -185438298 - L1ME LINE L1 -3549 2531 1949 207 0 0 0 chr6 3841256 3841279 -185438275 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3072 229 71 70 chr6 3841279 3841296 -185438258 - L1ME LINE L1 -4131 1949 1934 2247 114 114 75 chr6 3841296 3841338 -185438216 - MSTA LTR MaLR 0 428 389 1566 154 24 8 chr6 3841338 3841591 -185437963 + AluJb SINE Alu 23 279 -33 221 0 0 33 chr6 3841591 3841621 -185437933 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2247 114 114 75 chr6 3841621 3841989 -185437565 - MSTA LTR MaLR -38 390 1 3072 229 71 70 chr6 3841989 3843180 -185436374 - L1ME LINE L1 -4146 1934 742 2402 150 23 30 chr6 3843817 3844250 -185435304 - MSTB1 LTR MaLR 0 432 3 524 323 31 16 chr6 3844755 3844947 -185434607 - L2 LINE L2 -1 3312 3118 184 341 181 4 chr6 3844948 3845037 -185434517 - L2 LINE L2 -495 2819 2747 2496 205 58 5 chr6 3845037 3845485 -185434069 - MER70A LTR ERVL 0 472 1 184 341 181 4 chr6 3845485 3845621 -185433933 - L2 LINE L2 -567 2747 2554 234 281 114 24 chr6 3845806 3846016 -185433538 - L1M4 LINE L1 -2106 4040 3812 * 2525 166 53 0 chr6 3846001 3846177 -185433377 - L1MB3 LINE L1 -210 5973 5808 249 83 0 0 chr6 3846177 3846213 -185433341 + (TA)n Simple_repeat Simple_repeat 1 36 0 2525 166 53 0 chr6 3846213 3846487 -185433067 - L1MB3 LINE L1 -375 5808 5499 2189 116 0 0 chr6 3846493 3846794 -185432760 - AluY SINE Alu -9 302 2 3314 98 7 7 chr6 3846820 3847270 -185432284 - L1MA2 LINE L1 0 6304 5855 10792 175 52 14 chr6 3847270 3849458 -185430096 - L1MB3 LINE L1 -1282 4864 2593 1270 116 0 0 chr6 3849460 3849632 -185429922 - AluSq SINE Alu 0 313 142 233 171 0 0 chr6 3849764 3849805 -185429749 - HAL1 LINE L1 -109 2398 2358 3689 226 122 44 chr6 3849927 3851494 -185428060 - L1MDb LINE L1 -3979 2427 783 279 0 0 0 chr6 3851695 3851726 -185427828 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 222 128 0 0 chr6 3851872 3851911 -185427643 + (GA)n Simple_repeat Simple_repeat 1 39 0 375 302 17 26 chr6 3852773 3852889 -185426665 - MIR3 SINE MIR -9 199 85 356 250 190 9 chr6 3853419 3853535 -185426019 - L2 LINE L2 -2 3270 3134 273 252 39 87 chr6 3853785 3853888 -185425666 - L3 LINE CR1 -12 1565 1468 221 302 94 0 chr6 3854953 3855049 -185424505 + L2 LINE L2 3161 3265 -7 1890 191 26 63 chr6 3855416 3855846 -185423708 - MLT2D LTR ERVL 0 414 1 243 290 250 0 chr6 3856612 3856712 -185422842 + L2 LINE L2 3148 3272 0 2363 65 0 3 chr6 3856817 3857108 -185422446 + AluY SINE Alu 3 292 -19 217 339 45 18 chr6 3857170 3857282 -185422272 + L2 LINE L2 2643 2757 -557 2192 132 134 11 chr6 3858404 3858784 -185420770 + MSTA LTR MaLR 1 427 -1 314 333 117 26 chr6 3858848 3859112 -185420442 - L2 LINE L2 -9 3263 2976 1783 154 57 0 chr6 3859629 3859908 -185419646 - AluSg SINE Alu -14 296 2 1155 214 81 45 chr6 3860505 3860837 -185418717 + MER2 DNA MER2_type 1 344 0 939 210 16 0 chr6 3864066 3864252 -185415302 + MER2 DNA MER2_type 2 190 -155 2097 132 3 0 chr6 3864255 3864558 -185414996 - AluSq SINE Alu -9 304 1 324 224 0 15 chr6 3864582 3864649 -185414905 + MER2 DNA MER2_type 267 332 -13 1247 178 18 4 chr6 3864808 3865139 -185414415 - MER74A LTR ERVL -124 434 19 2095 85 0 0 chr6 3865139 3865398 -185414156 + AluSc SINE Alu 1 259 -50 191 61 30 0 chr6 3865408 3865441 -185414113 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 259 86 0 0 chr6 3865446 3865481 -185414073 - MER74C LTR ERVL -424 36 2 2552 241 58 24 chr6 3865484 3865692 -185413862 - L1ME3A LINE L1 -21 6149 5950 2006 146 7 0 chr6 3865692 3865994 -185413560 - AluSx SINE Alu -8 304 1 2552 241 58 24 chr6 3865994 3867209 -185412345 - L1ME3A LINE L1 -220 5950 4667 1257 215 15 4 chr6 3868330 3868616 -185410938 + AluJb SINE Alu 16 304 0 228 208 26 26 chr6 3868798 3868875 -185410679 - MER117 DNA MER1_type -5 192 116 326 277 28 35 chr6 3868945 3869086 -185410468 + MIR SINE MIR 8 147 -115 2077 210 33 9 chr6 3869086 3869539 -185410015 + MER101 LTR ERV1 11 474 0 2352 98 0 0 chr6 3869701 3869998 -185409556 - AluSq SINE Alu -10 303 7 207 0 0 0 chr6 3871208 3871231 -185408323 + (T)n Simple_repeat Simple_repeat 1 23 0 379 169 0 28 chr6 3871894 3871965 -185407589 + MER89-int LTR ERV1 2577 2645 -3686 1745 182 41 64 chr6 3872048 3872635 -185406919 + MER89-int LTR ERV1 1066 3012 -3319 705 213 70 39 chr6 3872559 3872789 -185406765 + LTR57-int LTR ERVL 1236 1472 -3871 * 2304 89 3 0 chr6 3872789 3873082 -185406472 + AluSg SINE Alu 1 294 -16 2402 97 0 0 chr6 3873223 3873531 -185406023 + AluSx SINE Alu 1 308 -4 883 169 15 36 chr6 3873581 3873776 -185405778 + MER89-int LTR ERV1 3540 3730 -2868 723 142 172 64 chr6 3873855 3874059 -185405495 + MER89-int LTR ERV1 3730 3955 -2643 865 114 57 0 chr6 3874060 3874183 -185405371 + FRAM SINE Alu 32 161 -15 2265 108 0 37 chr6 3874185 3874510 -185405044 + AluSq SINE Alu 1 313 0 2307 175 38 69 chr6 3874554 3875159 -185404395 + MER89-int LTR ERV1 4024 4609 -1722 265 277 15 46 chr6 3875145 3875275 -185404279 + MER89-int LTR ERV1 2727 2852 -1795 * 270 247 67 67 chr6 3876675 3876764 -185402790 + MER89-int LTR ERV1 6305 6393 -408 2414 150 32 47 chr6 3877331 3877804 -185401750 + MER101 LTR ERV1 9 474 0 1700 197 61 72 chr6 3878174 3878424 -185401130 + MLT1C LTR MaLR 1 245 -222 891 128 0 0 chr6 3878424 3878588 -185400966 + (GA)n Simple_repeat Simple_repeat 2 165 0 1700 197 61 72 chr6 3878588 3878809 -185400745 + MLT1C LTR MaLR 245 467 0 933 187 12 88 chr6 3879014 3879265 -185400289 - MER101 LTR ERV1 -111 363 132 370 184 167 18 chr6 3879688 3879802 -185399752 - L1ME4a LINE L1 -27 6374 6244 1459 265 121 24 chr6 3879830 3880542 -185399012 - HAL1 LINE L1 0 2507 1727 1364 258 94 28 chr6 3880539 3881281 -185398273 - L1ME4a LINE L1 -452 5998 5205 * 423 246 42 122 chr6 3881369 3881755 -185397799 - L1ME4a LINE L1 -3463 2963 2609 1570 173 43 34 chr6 3882135 3882458 -185397096 + MLT1B LTR MaLR 1 326 -64 581 98 0 80 chr6 3882457 3882569 -185396985 + Tigger4(Zombi) DNA MER2_type 2629 2731 0 * 300 262 94 67 chr6 3882900 3883265 -185396289 - L1MDa LINE L1 -4813 1613 1232 264 285 102 0 chr6 3883259 3883396 -185396158 - L1MDa LINE L1 -5069 1347 1197 * 243 211 53 123 chr6 3883510 3883624 -185395930 - MLT1H LTR MaLR -13 536 431 5121 83 25 3 chr6 3883743 3884419 -185395135 - LTR8 LTR ERV1 0 691 1 313 258 78 31 chr6 3884443 3884571 -185394983 - MLT1H LTR MaLR -365 184 51 25 0 0 0 chr6 3884620 3884645 -185394909 + AT_rich Low_complexity Low_complexity 1 25 0 873 237 118 0 chr6 3884787 3885015 -185394539 - MLT1E1 LTR MaLR -2 652 398 547 265 33 17 chr6 3885343 3885524 -185394030 - MIR SINE MIR 0 262 79 884 166 61 55 chr6 3885526 3885707 -185393847 + LTR54 LTR ERV1 2 183 -327 813 230 19 5 chr6 3885730 3885939 -185393615 + LTR54 LTR ERV1 299 510 0 2109 100 19 59 chr6 3886637 3886957 -185392597 - AluSx SINE Alu -5 307 1 184 308 39 51 chr6 3886973 3887129 -185392425 + MIR SINE MIR 1 154 -108 27 81 0 0 chr6 3887169 3887231 -185392323 + AT_rich Low_complexity Low_complexity 1 62 0 4147 109 148 110 chr6 3888848 3890213 -185389341 - pTR5 LTR ERV1 0 2438 742 231 173 77 0 chr6 3891835 3891887 -185387667 - L1 LINE L1 -3715 2431 2376 8012 14 0 0 chr6 3891893 3892961 -185386593 - L1PA2 LINE L1 -4 6151 5084 1859 175 34 0 chr6 3893247 3893544 -185386010 + AluSx SINE Alu 1 307 -5 1467 143 3 73 chr6 3893544 3893830 -185385724 - MER2 DNA MER2_type -79 266 1 8389 109 41 6 chr6 3894204 3895460 -185384094 + HSMAR2 DNA Mariner 2 1301 -1 22 0 0 0 chr6 3895585 3895607 -185383947 + AT_rich Low_complexity Low_complexity 1 22 0 258 274 73 32 chr6 3895652 3895776 -185383778 - L1MC/D LINE L1 -2159 5883 5755 680 272 68 33 chr6 3895891 3896351 -185383203 - L1MC/D LINE L1 -448 5722 5255 598 120 16 72 chr6 3896434 3896488 -185383066 - L1MB2 LINE L1 -5 6166 6111 1913 84 4 4 chr6 3896488 3896763 -185382791 - L1MA2 LINE L1 0 6304 6030 598 120 16 72 chr6 3896763 3896833 -185382721 - L1MB2 LINE L1 -60 6111 6049 44844 38 4 1 chr6 3896881 3903002 -185376552 - L1PA4 LINE L1 0 6155 13 594 256 42 30 chr6 3903005 3903267 -185376287 - L1MC/D LINE L1 -999 5147 4883 663 299 119 3 chr6 3903340 3903634 -185375920 + LTR16C LTR ERVL 71 398 -93 1633 189 4 0 chr6 3903704 3903968 -185375586 - AluJo SINE Alu -47 265 1 614 164 8 0 chr6 3905456 3905578 -185373976 + CT-rich Low_complexity Low_complexity 4 126 0 1560 170 56 35 chr6 3905665 3905953 -185373601 - AluJo SINE Alu -18 294 1 198 265 20 0 chr6 3906943 3906992 -185372562 + L2 LINE L2 3247 3296 -17 1848 175 153 0 chr6 3907608 3908008 -185371546 + LOR1b LTR ERV1 1 461 0 22 0 0 0 chr6 3908030 3908052 -185371502 + AT_rich Low_complexity Low_complexity 1 22 0 42 36 0 0 chr6 3908175 3908231 -185371323 + AT_rich Low_complexity Low_complexity 1 56 0 1124 132 113 33 chr6 3910099 3910312 -185369242 + AluJo SINE Alu 1 230 -82 1570 74 0 11 chr6 3910312 3910501 -185369053 - AluSp SINE Alu -126 187 1 2178 114 3 3 chr6 3910501 3910800 -185368754 - AluSx SINE Alu -13 299 1 850 265 175 10 chr6 3910833 3911343 -185368211 - L2 LINE L2 -16 3297 2709 722 178 144 29 chr6 3911470 3911678 -185367876 - MIR SINE MIR -11 251 20 834 238 102 0 chr6 3911823 3912029 -185367525 - MIR SINE MIR -33 229 3 1612 179 9 57 chr6 3912385 3912703 -185366851 - AluJo SINE Alu -9 303 1 224 327 0 0 chr6 3912830 3912885 -185366669 + L2 LINE L2 353 407 -2907 1099 129 6 18 chr6 3913210 3913381 -185366173 - FRAM SINE Alu -8 168 1 1735 170 13 42 chr6 3913537 3913848 -185365706 - AluJb SINE Alu -8 304 3 2284 115 0 6 chr6 3914127 3914440 -185365114 - AluSx SINE Alu -1 311 1 286 211 53 0 chr6 3914944 3915020 -185364534 + MER116 DNA Mariner 1 80 0 204 40 0 0 chr6 3915187 3915212 -185364342 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 203 259 9 60 chr6 3915844 3915960 -185363594 + A-rich Low_complexity Low_complexity 5 114 0 483 276 115 36 chr6 3918438 3918742 -185360812 - L1MC4a LINE L1 -1971 5837 5510 2230 77 4 0 chr6 3918880 3919199 -185360355 - AluSg SINE Alu 0 329 10 180 111 0 0 chr6 3919269 3919296 -185360258 + (TA)n Simple_repeat Simple_repeat 2 28 0 2059 79 0 95 chr6 3919305 3919644 -185359910 - AluSx SINE Alu 0 309 1 1962 119 14 4 chr6 3919891 3920169 -185359385 + AluSp SINE Alu 9 289 -24 1774 184 0 0 chr6 3920437 3920719 -185358835 - AluJb SINE Alu -30 282 1 665 240 60 0 chr6 3920723 3920873 -185358681 - AluJb SINE Alu -17 295 137 1850 141 24 10 chr6 3920907 3921205 -185358349 + AluJb SINE Alu 3 304 -8 261 0 0 0 chr6 3922480 3922509 -185357045 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1392 125 35 39 chr6 3922514 3922746 -185356808 - AluSx SINE Alu -37 275 45 351 247 118 12 chr6 3922999 3923169 -185356385 - HAL1 LINE L1 -1088 1419 1232 513 289 179 37 chr6 3923183 3923859 -185355695 - HAL1 LINE L1 -1477 1030 259 228 86 0 0 chr6 3924020 3924055 -185355499 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 1650 144 87 11 chr6 3924100 3924377 -185355177 - AluJb SINE Alu -14 298 1 358 224 187 0 chr6 3924456 3924590 -185354964 - L1ME2 LINE L1 -16 6148 5990 558 155 68 0 chr6 3924821 3924924 -185354630 - L1MC1 LINE L1 -5 6328 6219 1091 145 59 5 chr6 3925585 3925771 -185353783 + AluJb SINE Alu 108 303 -9 444 182 261 51 chr6 3925830 3926006 -185353548 + MER20 DNA MER1_type 7 219 0 344 234 26 0 chr6 3926346 3926423 -185353131 - MIR SINE MIR -61 147 69 1130 192 88 22 chr6 3927552 3927869 -185351685 - MER46C DNA MER2_type 0 338 1 850 174 0 153 chr6 3928574 3928907 -185350647 - L1MC5 LINE L1 -861 7100 6820 666 249 95 86 chr6 3928907 3929043 -185350511 - MER58B DNA MER1_type -2079 341 208 2369 58 10 7 chr6 3929043 3929356 -185350198 - AluY SINE Alu 0 314 1 666 249 95 86 chr6 3929356 3929556 -185349998 - MER58B DNA MER1_type -2212 208 1 850 174 0 153 chr6 3929556 3929849 -185349705 - L1MC5 LINE L1 -1141 6820 6476 1007 247 71 30 chr6 3930217 3930683 -185348871 - L1MC5 LINE L1 -2029 5779 5295 2162 114 3 0 chr6 3930858 3931155 -185348399 - AluSx SINE Alu -14 298 1 278 213 115 41 chr6 3931502 3931624 -185347930 + L1MC4 LINE L1 7906 8036 -6 405 0 0 0 chr6 3932099 3932144 -185347410 + (CA)n Simple_repeat Simple_repeat 2 46 0 2565 46 0 3 chr6 3932294 3932598 -185346956 + AluY SINE Alu 1 303 -8 1120 162 8 83 chr6 3932749 3932990 -185346564 - AluJo SINE Alu -5 307 85 2785 13 0 0 chr6 3934216 3934523 -185345031 - AluYa5 SINE Alu -4 307 1 2084 102 0 33 chr6 3935083 3935407 -185344147 - AluSx SINE Alu 0 312 1 2076 103 0 17 chr6 3935485 3935814 -185343740 - AluSq SINE Alu 0 313 1 454 174 22 22 chr6 3936450 3936569 -185342985 - AluSg/x SINE Alu 0 305 187 561 188 210 6 chr6 3937534 3937710 -185341844 - L1PA7 LINE L1 -1 6153 5942 1399 176 70 40 chr6 3938087 3938399 -185341155 - AluJo SINE Alu 0 320 1 2080 105 4 0 chr6 3938713 3938989 -185340565 - AluSc SINE Alu -20 289 13 23 33 0 0 chr6 3940448 3940478 -185339076 + AT_rich Low_complexity Low_complexity 1 30 0 1202 86 37 0 chr6 3941949 3942111 -185337443 - AluY SINE Alu -9 302 135 1134 165 36 45 chr6 3942208 3942432 -185337122 - AluJo SINE Alu -9 303 82 23 0 0 0 chr6 3943201 3943224 -185336330 + AT_rich Low_complexity Low_complexity 1 23 0 244 303 86 40 chr6 3943272 3943447 -185336107 + L2 LINE L2 2652 2834 -480 2075 122 3 23 chr6 3943838 3944142 -185335412 - AluSx SINE Alu -14 298 1 816 191 83 5 chr6 3944285 3944489 -185335065 - MER7A DNA MER2_type -117 229 12 21 0 0 0 chr6 3946706 3946727 -185332827 + AT_rich Low_complexity Low_complexity 1 21 0 852 168 48 12 chr6 3949811 3949978 -185329576 - AluSc SINE Alu -2 307 135 607 256 130 27 chr6 3950551 3950774 -185328780 - MIR SINE MIR -13 249 4 2217 96 31 0 chr6 3951419 3951710 -185327844 - AluSg1 SINE Alu -9 300 1 23 33 0 0 chr6 3951761 3951791 -185327763 + AT_rich Low_complexity Low_complexity 1 30 0 305 359 71 12 chr6 3951889 3952059 -185327495 + MER5A DNA MER1_type 8 187 -2 22 0 0 0 chr6 3954119 3954141 -185325413 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 3954300 3954332 -185325222 + AT_rich Low_complexity Low_complexity 1 32 0 1664 201 30 0 chr6 3954920 3955223 -185324331 + AluJb SINE Alu 1 312 0 415 297 133 0 chr6 3955620 3955785 -185323769 - MIR SINE MIR -74 188 2 303 261 0 15 chr6 3956169 3956234 -185323320 + MER5A DNA MER1_type 123 186 -3 2144 114 10 0 chr6 3956258 3956556 -185322998 + AluSq SINE Alu 1 301 -12 711 58 58 33 chr6 3956556 3956676 -185322878 + L1PA8 LINE L1 6050 6172 0 2279 98 3 0 chr6 3956678 3956973 -185322581 + AluSp SINE Alu 1 296 -17 714 235 27 27 chr6 3956999 3957182 -185322372 + MIR SINE MIR 53 235 -27 27 0 0 0 chr6 3957580 3957607 -185321947 + AT_rich Low_complexity Low_complexity 1 27 0 1964 133 3 20 chr6 3958049 3958349 -185321205 - AluSx SINE Alu -17 295 1 2140 108 0 40 chr6 3959247 3959570 -185319984 + AluSx SINE Alu 1 310 -2 441 292 81 49 chr6 3959953 3960138 -185319416 + L3b LINE CR1 1303 1493 -90 234 81 0 27 chr6 3960154 3960191 -185319363 + MER5B DNA MER1_type 20 55 -123 2262 109 0 6 chr6 3960242 3960553 -185319001 + AluSx SINE Alu 1 309 -3 181 194 0 0 chr6 3960553 3960584 -185318970 + MER5A DNA MER1_type 111 141 -48 329 222 25 0 chr6 3960586 3960667 -185318887 + U13 snRNA snRNA 1 83 -21 2045 108 37 17 chr6 3960794 3961090 -185318464 + AluSx SINE Alu 1 302 -10 2611 63 0 0 chr6 3962247 3962549 -185317005 - AluSg SINE Alu -8 302 1 27 100 0 0 chr6 3963411 3963501 -185316053 + GC_rich Low_complexity Low_complexity 1 90 0 21 36 0 0 chr6 3963534 3963562 -185315992 + GC_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr6 3964229 3964261 -185315293 + AT_rich Low_complexity Low_complexity 1 32 0 566 218 91 63 chr6 3964430 3964682 -185314872 + L2 LINE L2 3032 3290 -23 332 263 26 26 chr6 3965370 3965484 -185314070 - MIR SINE MIR -13 249 136 2154 104 3 35 chr6 3965491 3965809 -185313745 - AluSx SINE Alu -4 308 1 3730 103 68 6 chr6 3966504 3967050 -185312504 + MER39B LTR ERV1 1 580 -73 510 233 10 0 chr6 3967050 3967153 -185312401 - AluSc SINE Alu -93 216 113 2112 142 0 7 chr6 3967737 3968047 -185311507 - AluSx SINE Alu 0 312 5 207 108 27 0 chr6 3969509 3969546 -185310008 + (TA)n Simple_repeat Simple_repeat 2 39 0 247 182 45 15 chr6 3970005 3970025 -185309529 + GA-rich Low_complexity Low_complexity 2 20 -49 1713 156 48 17 chr6 3970025 3970314 -185309240 + AluJo SINE Alu 1 298 -14 247 182 45 15 chr6 3970314 3970359 -185309195 + GA-rich Low_complexity Low_complexity 20 69 0 2382 98 3 0 chr6 3970362 3970669 -185308885 + AluSp SINE Alu 1 308 -5 1232 175 16 70 chr6 3972043 3972357 -185307197 - AluJo SINE Alu -15 297 1 2439 67 3 3 chr6 3972515 3972815 -185306739 - AluY SINE Alu -11 300 1 2105 112 34 3 chr6 3973272 3973566 -185305988 + AluSx SINE Alu 1 303 -9 1111 138 56 81 chr6 3973663 3973708 -185305846 - MLT1A1 LTR MaLR 0 365 320 2338 97 10 0 chr6 3973708 3974008 -185305546 + AluSq SINE Alu 1 303 -10 1111 138 56 81 chr6 3974008 3974205 -185305349 - MLT1A1 LTR MaLR -45 320 173 6129 117 208 86 chr6 3974206 3975675 -185303879 + pTR5 LTR ERV1 791 2438 0 593 183 32 40 chr6 3975714 3975840 -185303714 - MLT1A1 LTR MaLR -240 125 1 279 85 85 43 chr6 3975957 3976004 -185303550 - MER8 DNA MER2_type 0 239 191 254 250 24 97 chr6 3976009 3976133 -185303421 + LTR4 LTR ERV1 5 119 -477 767 232 28 46 chr6 3976370 3976654 -185302900 + LTR4 LTR ERV1 318 596 0 4077 131 29 50 chr6 3976654 3976775 -185302779 + Tigger2 DNA MER2_type 47 169 -2549 1949 126 7 0 chr6 3976775 3977045 -185302509 + AluSx SINE Alu 5 276 -36 4077 131 29 50 chr6 3977045 3977248 -185302306 + Tigger2 DNA MER2_type 169 375 -2343 2141 124 3 0 chr6 3977248 3977546 -185302008 + AluSq SINE Alu 1 299 -14 4077 131 29 50 chr6 3977546 3977943 -185301611 + Tigger2 DNA MER2_type 375 754 -1964 919 142 77 27 chr6 3977995 3978020 -185301534 + Tigger2 DNA MER2_type 2461 2483 -235 2082 131 7 0 chr6 3978020 3978318 -185301236 - AluSx SINE Alu -12 300 1 919 142 77 27 chr6 3978318 3978475 -185301079 + Tigger2 DNA MER2_type 2483 2652 -66 601 119 30 50 chr6 3978523 3978602 -185300952 + FLAM_A SINE Alu 29 107 -204 2172 106 13 7 chr6 3978602 3978903 -185300651 - AluSc SINE Alu -6 303 1 601 119 30 50 chr6 3978903 3978924 -185300630 + FLAM_A SINE Alu 107 127 -184 361 221 15 0 chr6 3978925 3978993 -185300561 + Tigger2 DNA MER2_type 2640 2708 -10 2200 99 3 0 chr6 3979006 3979329 -185300225 - AluSx SINE Alu 0 324 1 1670 193 74 37 chr6 3979541 3979971 -185299583 + MLT1C LTR MaLR 18 463 -4 480 281 72 27 chr6 3980255 3980615 -185298939 + L1ME4a LINE L1 5600 5984 -137 26 0 0 0 chr6 3981501 3981527 -185298027 + AT_rich Low_complexity Low_complexity 1 26 0 1458 138 9 9 chr6 3981531 3981755 -185297799 + AluJo SINE Alu 36 259 -53 2402 51 27 0 chr6 3982375 3982667 -185296887 - AluY SINE Alu -11 300 1 2335 84 0 0 chr6 3982798 3983083 -185296471 - AluY SINE Alu -26 285 1 315 272 234 0 chr6 3983819 3984003 -185295551 - L2 LINE L2 -549 2765 2539 2255 112 3 13 chr6 3984107 3984421 -185295133 - AluSx SINE Alu -1 311 1 1866 151 130 16 chr6 3984881 3985265 -185294289 + MSTA LTR MaLR 1 428 0 185 302 0 38 chr6 3985457 3985510 -185294044 + L2 LINE L2 3163 3213 -59 477 252 25 0 chr6 3985614 3985733 -185293821 - MLT1H LTR MaLR -425 124 3 2494 143 16 9 chr6 3985982 3986407 -185293147 + L1MA3 LINE L1 5600 6027 -278 2503 127 8 3 chr6 3986409 3986795 -185292759 + L1MA5 LINE L1 5903 6290 -10 2413 97 0 0 chr6 3987768 3988079 -185291475 - AluSq SINE Alu -2 311 1 345 127 0 0 chr6 3988086 3988141 -185291413 - Alu SINE Alu -1 300 246 3641 211 98 54 chr6 3988537 3988849 -185290705 - L1M4 LINE L1 -806 5340 5043 2446 78 0 0 chr6 3988849 3989144 -185290410 + AluY SINE Alu 1 295 -16 3641 211 98 54 chr6 3989144 3989295 -185290259 - L1M4 LINE L1 -1103 5043 4900 2281 115 7 0 chr6 3989295 3989590 -185289964 - AluSx SINE Alu -15 297 1 3641 211 98 54 chr6 3989590 3990030 -185289524 - L1M4 LINE L1 -1246 4900 4481 2958 170 129 21 chr6 3990030 3990736 -185288818 - LTR48 LTR ERV1 -3 784 3 3641 211 98 54 chr6 3990736 3990890 -185288664 - L1M4 LINE L1 -1665 4481 4335 2838 161 39 17 chr6 3990890 3991430 -185288124 - L1MB1 LINE L1 -1 6167 5616 3641 211 98 54 chr6 3991430 3991802 -185287752 - L1M4 LINE L1 -1811 4335 3846 2630 127 83 22 chr6 3991812 3992317 -185287237 - L1MB4 LINE L1 -3 6177 5642 306 137 78 0 chr6 3992319 3992370 -185287184 + MSTD LTR MaLR 1 55 -373 1497 184 92 30 chr6 3994216 3994552 -185285002 + MSTD LTR MaLR 40 396 0 255 87 0 87 chr6 3994552 3994598 -185284956 - L1MB4 LINE L1 -539 5644 5603 * 5453 219 97 19 chr6 3994586 3997176 -185282378 - L1M4 LINE L1 -1462 4920 924 2013 142 3 7 chr6 3997176 3997479 -185282075 - AluSx SINE Alu -10 302 1 5453 219 97 19 chr6 3997479 3997662 -185281892 - L1M4 LINE L1 -5458 924 757 347 303 67 26 chr6 3998293 3998533 -185281021 - L1MDb LINE L1 -5484 586 323 287 68 45 0 chr6 3998664 3998708 -185280846 + MADE1 DNA Mariner 1 46 -34 337 331 33 11 chr6 3998759 3998943 -185280611 - L1MDb LINE L1 -5882 188 1 273 311 34 17 chr6 3998943 3999062 -185280492 + MIR SINE MIR 47 167 -95 2253 103 10 0 chr6 4000268 4000560 -185278994 + AluSx SINE Alu 1 295 -17 2162 114 0 10 chr6 4000642 4000941 -185278613 - AluSx SINE Alu -16 296 1 286 256 22 11 chr6 4001017 4001107 -185278447 - MER5A DNA MER1_type -89 100 10 2208 116 0 3 chr6 4002235 4002529 -185277025 - AluSx SINE Alu -19 293 1 2133 123 0 7 chr6 4003517 4003818 -185275736 - AluSx SINE Alu -13 299 1 25 0 0 0 chr6 4003866 4003891 -185275663 + AT_rich Low_complexity Low_complexity 1 25 0 2380 210 50 114 chr6 4003930 4004367 -185275187 - L1ME2 LINE L1 -49 6115 5651 376 100 0 57 chr6 4004367 4004392 -185275162 + L1MA9 LINE L1 6247 6272 -40 1829 186 20 12 chr6 4004392 4004642 -185274912 - MER7A DNA MER2_type -2693 345 92 2127 108 38 0 chr6 4004642 4004929 -185274625 + AluSx SINE Alu 1 298 -14 1829 186 20 12 chr6 4004929 4005022 -185274532 - MER7A DNA MER2_type -2946 92 1 376 100 0 57 chr6 4005022 4005066 -185274488 + L1MA9 LINE L1 6272 6312 0 2380 210 50 114 chr6 4005066 4005625 -185273929 - L1ME2 LINE L1 -513 5651 5176 349 209 63 4 chr6 4006292 4006407 -185273147 + MIR SINE MIR 19 146 -63 2363 105 0 0 chr6 4006414 4006718 -185272836 - AluSx SINE Alu -8 304 1 233 150 0 0 chr6 4006758 4006798 -185272756 - Alu SINE Alu -7 126 87 1461 119 0 0 chr6 4006800 4006993 -185272561 - AluSq SINE Alu -120 193 1 1958 112 0 18 chr6 4007357 4007633 -185271921 - AluSx SINE Alu 0 312 42 183 125 83 0 chr6 4007735 4007807 -185271747 + (TA)n Simple_repeat Simple_repeat 2 79 0 1952 123 27 17 chr6 4007882 4008174 -185271380 + AluSx SINE Alu 1 295 -17 416 239 22 46 chr6 4008708 4008927 -185270627 + L1ME4a LINE L1 5709 6121 0 302 222 86 20 chr6 4008964 4009070 -185270484 + MIR3 SINE MIR 79 194 -14 528 310 64 74 chr6 4010462 4011000 -185268554 - L2 LINE L2 -2 3270 2733 1706 249 41 21 chr6 4011011 4011526 -185268028 - L1ME2 LINE L1 -8 6156 5632 2014 116 0 0 chr6 4011602 4011869 -185267685 - AluSg SINE Alu -2 308 42 1876 164 33 9 chr6 4012766 4013102 -185266452 - MER2 DNA MER2_type 0 344 1 249 108 0 0 chr6 4013287 4013324 -185266230 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 1999 132 17 3 chr6 4013324 4013611 -185265943 - AluSx SINE Alu -21 291 1 266 322 203 0 chr6 4013615 4013792 -185265762 + MIR SINE MIR 50 262 0 25 0 0 0 chr6 4015709 4015734 -185263820 + AT_rich Low_complexity Low_complexity 1 25 0 2236 135 0 0 chr6 4015772 4016084 -185263470 + AluSx SINE Alu 1 312 0 1039 258 31 28 chr6 4016250 4016572 -185262982 - MER77 LTR ERV1 -6 599 277 528 248 106 47 chr6 4016832 4016962 -185262592 - L1MC5 LINE L1 -31 7930 7809 2178 117 7 0 chr6 4016962 4017261 -185262293 - AluSx SINE Alu -11 301 1 528 248 106 47 chr6 4017261 4017534 -185262020 - L1MC5 LINE L1 -152 7809 7503 441 263 80 144 chr6 4019670 4020419 -185259135 - L1M2 LINE L1 -5489 1360 660 228 67 0 0 chr6 4020701 4020731 -185258823 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 222 237 0 66 chr6 4020929 4021005 -185258549 - MIR SINE MIR -129 133 63 2082 113 14 3 chr6 4021115 4021408 -185258146 - AluSq SINE Alu -17 296 1 857 174 73 18 chr6 4021719 4021937 -185257617 - LTR37B LTR ERV1 -42 426 197 2558 251 103 39 chr6 4022636 4023488 -185256066 - ERVL LTR ERVL -692 5072 4166 700 227 122 46 chr6 4023568 4023872 -185255682 - HAL1 LINE L1 -1069 1438 1112 441 258 24 72 chr6 4023896 4024063 -185255491 - L1MD2 LINE L1 -2 6357 6199 1950 234 86 4 chr6 4025390 4025878 -185253676 - L1MD2 LINE L1 -144 6215 5688 642 248 41 60 chr6 4025878 4026028 -185253526 - HAL1 LINE L1 -1400 1107 956 2166 115 7 3 chr6 4026028 4026333 -185253221 - AluSx SINE Alu -6 306 1 642 248 41 60 chr6 4026333 4026496 -185253058 - HAL1 LINE L1 -1551 956 800 622 130 0 46 chr6 4026541 4026649 -185252905 - MLT1J2 LTR MaLR -2 448 346 270 299 28 40 chr6 4026720 4026897 -185252657 + HAL1 LINE L1 2258 2432 -75 2036 149 41 24 chr6 4027110 4027479 -185252075 - THE1C LTR MaLR 0 375 1 262 236 67 22 chr6 4027738 4027827 -185251727 - L1MD2 LINE L1 -863 5283 5191 271 252 0 54 chr6 4027828 4027942 -185251612 - MIR SINE MIR -97 111 17 3280 126 6 12 chr6 4027989 4028483 -185251071 + L1PA13 LINE L1 5666 6156 -7 469 269 58 32 chr6 4028497 4028653 -185250901 + MIR SINE MIR 24 183 -79 23 33 0 0 chr6 4028706 4028736 -185250818 + AT_rich Low_complexity Low_complexity 1 30 0 677 274 18 39 chr6 4029120 4029401 -185250153 + MARNA DNA Mariner 191 465 -121 249 211 92 13 chr6 4029333 4029409 -185250145 - MARNA DNA Mariner -395 191 110 * 2551 124 5 22 chr6 4029700 4030070 -185249484 + THE1B LTR MaLR 1 364 0 750 181 9 0 chr6 4031332 4031448 -185248106 + FLAM_C SINE Alu 1 117 -16 216 0 0 0 chr6 4031454 4031478 -185248076 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2428 84 0 0 chr6 4032060 4032387 -185247167 + AluSc SINE Alu 1 309 0 955 174 0 0 chr6 4032466 4032627 -185246927 - FRAM SINE Alu -4 172 12 292 281 0 0 chr6 4035414 4035478 -185244076 - L2 LINE L2 -5 3267 3204 2284 92 0 10 chr6 4035941 4036247 -185243307 + AluSg SINE Alu 1 303 -7 869 176 84 130 chr6 4036248 4036471 -185243083 - MLT1B LTR MaLR 0 390 181 2341 83 3 0 chr6 4036471 4036771 -185242783 - AluSc SINE Alu -6 303 3 869 176 84 130 chr6 4036771 4036831 -185242723 - MLT1B LTR MaLR -209 181 120 916 214 144 28 chr6 4036831 4037116 -185242438 - LTR36 LTR ERV1 -1 610 293 356 185 0 0 chr6 4037283 4037346 -185242208 - MLT1C LTR MaLR -263 127 65 3373 116 22 41 chr6 4037346 4037931 -185241623 + MER4B LTR ERV1 1 574 -36 448 95 0 81 chr6 4037962 4038036 -185241518 - MLT1C LTR MaLR -399 68 1 1794 241 47 9 chr6 4038073 4038497 -185241057 + MER21B LTR ERV1 12 451 -412 873 121 0 0 chr6 4038506 4038630 -185240924 - FRAM SINE Alu -1 175 52 3897 138 98 8 chr6 4038630 4039281 -185240273 - MER50 LTR ERV1 -24 710 1 346 210 0 0 chr6 4039281 4039339 -185240215 - AluJ/FLAM SINE Alu -244 58 1 971 254 50 53 chr6 4039347 4039685 -185239869 + MER21B LTR ERV1 466 802 -61 2334 104 0 0 chr6 4040102 4040400 -185239154 + AluSq SINE Alu 1 298 -15 278 309 0 0 chr6 4040458 4040539 -185239015 + L1ME LINE L1 4263 4343 -1803 633 260 61 25 chr6 4040952 4040981 -185238573 + MIR SINE MIR 52 79 -183 1764 161 27 3 chr6 4040981 4041273 -185238281 + AluJb SINE Alu 4 302 -10 633 260 61 25 chr6 4041273 4041439 -185238115 + MIR SINE MIR 79 254 -8 284 345 44 32 chr6 4041501 4041583 -185237971 + L1ME LINE L1 5319 5399 -722 2083 133 3 0 chr6 4041583 4041883 -185237671 + AluSx SINE Alu 1 301 -11 284 345 44 32 chr6 4041883 4042139 -185237415 + L1ME LINE L1 5399 5661 -460 234 333 29 29 chr6 4043862 4043967 -185235587 - L2 LINE L2 -8 3305 3201 789 85 171 0 chr6 4043967 4044096 -185235458 + LTR24C LTR ERV1 1 151 -484 252 277 30 50 chr6 4044178 4044279 -185235275 - L2 LINE L2 -480 2834 2736 335 67 0 50 chr6 4044726 4044786 -185234768 + (A)n Simple_repeat Simple_repeat 1 57 0 1013 119 0 0 chr6 4044837 4044971 -185234583 + AluSq/x SINE Alu 2 135 -178 1831 162 3 7 chr6 4044971 4045267 -185234287 + AluSx SINE Alu 1 295 -17 1676 144 39 35 chr6 4047015 4047300 -185232254 + AluJo SINE Alu 1 286 -26 553 221 123 7 chr6 4047652 4047806 -185231748 + MIR SINE MIR 57 228 -34 1887 59 0 0 chr6 4047896 4048117 -185231437 - AluY SINE Alu -17 294 74 1861 153 3 10 chr6 4049008 4049308 -185230246 + AluJb SINE Alu 1 298 -14 392 313 108 5 chr6 4049667 4049862 -185229692 + LTR16A LTR ERVL 158 372 -78 636 307 180 13 chr6 4050194 4050510 -185229044 - MLT1I LTR MaLR 0 409 41 2087 139 38 46 chr6 4050639 4050985 -185228569 + MER2 DNA MER2_type 1 343 -1 229 267 174 0 chr6 4051092 4051178 -185228376 - L2 LINE L2 -4 3309 3209 1145 115 4 106 chr6 4051297 4051532 -185228022 + L1MB7 LINE L1 5907 6117 -67 2418 66 0 7 chr6 4051564 4051867 -185227687 - AluY SINE Alu -10 301 1 351 44 0 0 chr6 4051870 4051915 -185227639 + (T)n Simple_repeat Simple_repeat 1 45 0 878 263 110 53 chr6 4052087 4053344 -185226210 + L1M4 LINE L1 3790 5163 -983 2235 104 3 10 chr6 4053344 4053653 -185225901 + AluSg SINE Alu 1 307 -3 878 263 110 53 chr6 4053653 4053670 -185225884 + L1M4 LINE L1 5163 5178 -968 2100 95 0 0 chr6 4053680 4053944 -185225610 + AluSq SINE Alu 1 264 -49 455 273 43 91 chr6 4054196 4054427 -185225127 - MIR SINE MIR -42 220 1 199 209 0 47 chr6 4054735 4054778 -185224776 + L2 LINE L2 3215 3255 -17 22 56 0 0 chr6 4054901 4054937 -185224617 + AT_rich Low_complexity Low_complexity 1 36 0 441 295 61 120 chr6 4055683 4055823 -185223731 - L2 LINE L2 -1 3312 3165 2214 100 13 0 chr6 4055823 4056122 -185223432 + AluSp SINE Alu 1 303 -10 441 295 61 120 chr6 4056122 4056541 -185223013 - L2 LINE L2 -148 3165 2768 1034 134 6 39 chr6 4056687 4056866 -185222688 - FRAM SINE Alu -1 175 3 846 209 60 0 chr6 4057388 4057603 -185221951 + Charlie1 DNA MER1_type 2534 2761 0 406 289 170 7 chr6 4058006 4058141 -185221413 + MER5A DNA MER1_type 33 189 0 501 302 67 41 chr6 4058439 4058783 -185220771 + L1MEc LINE L1 32 384 -6012 6099 174 22 18 chr6 4058888 4059798 -185219756 + L1 LINE L1 4081 4997 -1149 2025 125 31 7 chr6 4059798 4060087 -185219467 + AluSx SINE Alu 1 296 -16 6099 174 22 18 chr6 4060087 4060378 -185219176 + L1 LINE L1 4997 5286 -860 1015 175 0 28 chr6 4060382 4060559 -185218995 + AluJo SINE Alu 16 187 -125 1121 148 0 44 chr6 4060561 4060764 -185218790 + AluJo SINE Alu 119 312 0 1222 245 119 42 chr6 4060765 4061344 -185218210 + L1MEc LINE L1 1737 2347 -3868 2126 107 0 0 chr6 4061344 4061659 -185217895 + AluSg SINE Alu 1 315 0 1222 245 119 42 chr6 4061659 4061924 -185217630 + L1MEc LINE L1 2347 2590 -3625 977 291 150 28 chr6 4061987 4062382 -185217172 + L2 LINE L2 2339 2809 -505 809 189 8 0 chr6 4062382 4062514 -185217040 - FLAM_C SINE Alu 0 133 1 977 291 150 28 chr6 4062514 4062619 -185216935 + L2 LINE L2 2809 2900 -414 2260 85 0 0 chr6 4062676 4062988 -185216566 + AluSg SINE Alu 1 312 0 24 0 0 0 chr6 4063053 4063077 -185216477 + AT_rich Low_complexity Low_complexity 1 24 0 311 327 152 14 chr6 4063308 4063519 -185216035 - MIR SINE MIR -21 241 2 255 257 88 22 chr6 4063698 4063834 -185215720 + L1ME4a LINE L1 5944 6088 -33 300 296 114 0 chr6 4065606 4065738 -185213816 + MIR SINE MIR 20 166 -96 1932 84 73 14 chr6 4065842 4066128 -185213426 - AluSq SINE Alu -10 303 1 2354 65 17 3 chr6 4066328 4066621 -185212933 - AluSx SINE Alu -14 298 2 198 0 0 0 chr6 4068176 4068198 -185211356 + (T)n Simple_repeat Simple_repeat 1 22 0 207 88 0 0 chr6 4068475 4068509 -185211045 + (T)n Simple_repeat Simple_repeat 1 34 0 811 195 58 6 chr6 4069331 4069505 -185210049 - MIR SINE MIR -74 188 6 1087 183 48 60 chr6 4069729 4069894 -185209660 - AluJb SINE Alu -3 309 147 2182 113 0 0 chr6 4069894 4070186 -185209368 - AluSc SINE Alu -17 292 1 1087 183 48 60 chr6 4070186 4070271 -185209283 - AluJb SINE Alu -165 147 62 535 194 0 0 chr6 4070274 4070367 -185209187 + FLAM_A SINE Alu 31 123 -19 2155 110 14 3 chr6 4070634 4070925 -185208629 - AluSx SINE Alu -18 294 1 245 295 95 0 chr6 4071874 4071969 -185207585 - L2 LINE L2 -2 3311 3208 1259 99 0 0 chr6 4072025 4072186 -185207368 - AluSp SINE Alu -15 298 138 300 53 0 0 chr6 4072286 4072324 -185207230 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 1593 166 55 35 chr6 4072409 4072699 -185206855 - AluJo SINE Alu -16 296 1 198 265 20 0 chr6 4073689 4073738 -185205816 + L2 LINE L2 3247 3296 -17 1848 175 153 0 chr6 4074354 4074754 -185204800 + LOR1b LTR ERV1 1 461 0 22 0 0 0 chr6 4074776 4074798 -185204756 + AT_rich Low_complexity Low_complexity 1 22 0 42 36 0 0 chr6 4074921 4074977 -185204577 + AT_rich Low_complexity Low_complexity 1 56 0 1505 147 88 26 chr6 4076845 4077118 -185202436 + AluJo SINE Alu 1 290 -22 685 249 23 17 chr6 4077308 4077485 -185202069 - MER5B DNA MER1_type 0 178 1 345 100 0 0 chr6 4077533 4077583 -185201971 + (CA)n Simple_repeat Simple_repeat 1 50 0 2318 137 16 29 chr6 4078210 4078590 -185200964 - THE1C LTR MaLR 0 375 1 10268 107 31 45 chr6 4078592 4080193 -185199361 - THE1C-int LTR MaLR -2 1578 1 2312 120 29 27 chr6 4080193 4080567 -185198987 - THE1C LTR MaLR 0 375 1 1260 186 93 47 chr6 4080657 4080958 -185198596 + MSTB1 LTR MaLR 1 315 -117 25 0 0 0 chr6 4081450 4081475 -185198079 + AT_rich Low_complexity Low_complexity 1 25 0 3321 159 3 52 chr6 4082224 4082670 -185196884 + MER73 LTR ERVL 15 422 -222 2329 89 3 29 chr6 4082670 4082984 -185196570 - AluY SINE Alu -5 306 1 3321 159 3 52 chr6 4082984 4083171 -185196383 + MER73 LTR ERVL 422 617 -27 1318 149 14 0 chr6 4083172 4083380 -185196174 - THE1C LTR MaLR 0 375 165 334 252 43 0 chr6 4083559 4083674 -185195880 - THE1C LTR MaLR -246 129 10 537 216 7 14 chr6 4083688 4083827 -185195727 - THE1C-int LTR MaLR -4 1576 1439 * 7275 119 34 41 chr6 4083822 4085097 -185194457 - THE1C-int LTR MaLR -367 1213 3 2659 102 11 3 chr6 4085099 4085471 -185194083 - THE1C LTR MaLR 0 375 1 299 301 199 15 chr6 4085777 4085973 -185193581 - MIR SINE MIR 0 262 31 623 235 22 34 chr6 4086015 4086194 -185193360 + MER5B DNA MER1_type 1 177 -1 282 164 0 0 chr6 4086230 4086285 -185193269 + (CA)n Simple_repeat Simple_repeat 2 56 0 516 321 75 11 chr6 4086615 4086895 -185192659 + MER102a DNA MER1_type 1 298 -32 2259 138 30 25 chr6 4087487 4087849 -185191705 + THE1B LTR MaLR 1 364 0 11686 90 13 10 chr6 4087849 4089425 -185190129 + THE1B-int LTR MaLR 1 1580 0 1069 164 55 32 chr6 4089427 4089646 -185189908 + THE1B LTR MaLR 3 226 -149 492 249 15 88 chr6 4089657 4089862 -185189692 + LTR4 LTR ERV1 10 199 -397 390 261 50 31 chr6 4090055 4090216 -185189338 + LTR4 LTR ERV1 318 481 -115 8728 162 27 27 chr6 4090231 4091841 -185187713 + L1P LINE L1 11 1620 -4526 1636 155 79 65 chr6 4091856 4092129 -185187425 + HERVL74 LTR ERVL 1243 1525 -4160 1928 128 0 21 chr6 4092129 4092439 -185187115 + AluSx SINE Alu 1 304 0 1636 155 79 65 chr6 4092439 4092531 -185187023 + HERVL74 LTR ERVL 1525 1614 -4071 1729 159 101 29 chr6 4092534 4092622 -185186932 + L1MA4 LINE L1 5642 5722 -578 1544 182 0 0 chr6 4092622 4092864 -185186690 + AluSx SINE Alu 1 242 -70 1729 159 101 29 chr6 4092864 4092895 -185186659 + L1MA4 LINE L1 5722 5749 -551 432 0 0 0 chr6 4092895 4092943 -185186611 + (CA)n Simple_repeat Simple_repeat 2 49 0 1729 159 101 29 chr6 4092943 4093200 -185186354 + L1MA4 LINE L1 5749 6046 -254 957 143 0 0 chr6 4093203 4093336 -185186218 + FLAM_C SINE Alu 1 133 -10 751 309 77 3 chr6 4093360 4093726 -185185828 + L1ME LINE L1 4910 5302 -844 450 53 0 0 chr6 4093726 4093783 -185185771 - U2 snRNA snRNA -125 63 7 1656 41 0 0 chr6 4093783 4093979 -185185575 + L1PA5 LINE L1 5959 6154 0 401 230 29 7 chr6 4093981 4094139 -185185415 + L1ME LINE L1 5328 5486 -676 18806 127 20 56 chr6 4094152 4097522 -185182032 + L1P LINE L1 12 3260 -2886 18359 78 18 5 chr6 4097701 4100938 -185178616 + L1PA6 LINE L1 2882 6153 -1 352 165 87 58 chr6 4100938 4101041 -185178513 + LTR4 LTR ERV1 477 582 -14 * 829 175 75 12 chr6 4101036 4101196 -185178358 + THE1B LTR MaLR 193 362 -2 225 204 0 0 chr6 4101433 4101477 -185178077 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 818 217 44 113 chr6 4101574 4102077 -185177477 + LTR37B LTR ERV1 1 468 0 1541 231 50 29 chr6 4102085 4102540 -185177014 - L1MC4 LINE L1 -96 7946 7482 664 240 0 0 chr6 4103027 4103156 -185176398 + FLAM_A SINE Alu 1 129 -4 2775 258 97 16 chr6 4104185 4105277 -185174277 - L1M4 LINE L1 -1824 4322 3143 1316 190 62 0 chr6 4105315 4105573 -185173981 - AluJo SINE Alu -38 274 1 444 237 0 0 chr6 4105642 4105781 -185173773 + L1M4 LINE L1 3047 3185 -2961 1111 269 111 24 chr6 4106260 4106368 -185173186 + HERV16 LTR ERVL 871 968 -4028 1935 60 0 9 chr6 4106368 4106600 -185172954 - AluY SINE Alu -14 297 68 1111 269 111 24 chr6 4106600 4106915 -185172639 + HERV16 LTR ERVL 968 1331 -3665 285 29 0 0 chr6 4107191 4107225 -185172329 + (TG)n Simple_repeat Simple_repeat 2 35 0 2404 108 57 5 chr6 4107328 4107698 -185171856 - L1PA11 LINE L1 -1 6173 5785 2267 125 3 0 chr6 4107704 4108015 -185171539 - AluSx SINE Alu 0 312 1 25 0 0 0 chr6 4109000 4109025 -185170529 + AT_rich Low_complexity Low_complexity 1 25 0 2842 109 144 2 chr6 4109183 4109649 -185169905 - THE1C-int LTR MaLR -1045 535 4 1839 155 61 22 chr6 4109652 4110013 -185169541 - THE1C LTR MaLR 0 375 1 4395 195 19 20 chr6 4110043 4110368 -185169186 - L1MA9 LINE L1 -161 6151 5827 2256 103 0 16 chr6 4110368 4110678 -185168876 - AluY SINE Alu -6 305 1 4395 195 19 20 chr6 4110678 4110711 -185168843 - L1MA9 LINE L1 -485 5827 5795 348 24 0 0 chr6 4110711 4110752 -185168802 + (CA)n Simple_repeat Simple_repeat 2 42 0 4395 195 19 20 chr6 4110752 4111197 -185168357 - L1MA9 LINE L1 -517 5795 5351 2361 101 0 0 chr6 4111197 4111494 -185168060 - AluSx SINE Alu -15 297 1 2442 74 0 3 chr6 4111499 4111798 -185167756 - AluY SINE Alu -13 298 1 4395 195 19 20 chr6 4111798 4112381 -185167173 - L1MA9 LINE L1 -965 5347 4765 934 221 67 0 chr6 4112383 4112578 -185166976 - AluJb SINE Alu -23 289 82 184 317 0 0 chr6 4162878 4162938 -185116616 + MIR SINE MIR 47 106 -156 531 274 177 23 chr6 4162949 4163339 -185116215 + MLT1J2 LTR MaLR 1 450 0 2608 57 0 0 chr6 4163453 4163751 -185115803 + AluY SINE Alu 2 299 -12 185 108 27 0 chr6 4164198 4164235 -185115319 + CT-rich Low_complexity Low_complexity 3 40 0 615 235 86 29 chr6 4164324 4164567 -185114987 - L1ME4a LINE L1 -177 5944 5688 2569 186 24 24 chr6 4164815 4165321 -185114233 + MLT2B2 LTR ERVL 2 507 -8 694 194 19 0 chr6 4165460 4165620 -185113934 + CT-rich Low_complexity Low_complexity 4 166 0 4566 184 40 25 chr6 4165638 4167253 -185112301 - L1MB7 LINE L1 -16 6168 4530 2291 118 0 0 chr6 4167520 4167825 -185111729 + AluSq SINE Alu 1 305 -8 193 284 28 110 chr6 4167946 4168055 -185111499 + MIR SINE MIR 36 135 -73 182 282 64 0 chr6 4169815 4169893 -185109661 - L2 LINE L2 -57 3215 3133 194 366 113 7 chr6 4169985 4170127 -185109427 - L2 LINE L2 -169 3103 2947 202 186 17 85 chr6 4170356 4170415 -185109139 - L2 LINE L2 -488 2826 2772 281 297 82 36 chr6 4170516 4170711 -185108843 + Charlie8 DNA MER1_type 115 1416 -1001 551 307 199 28 chr6 4171867 4171890 -185107664 - L2 LINE L2 0 3272 3254 1643 253 103 2 chr6 4171890 4172336 -185107218 - LTR16C LTR ERVL 0 491 1 551 307 199 28 chr6 4172336 4172638 -185106916 - L2 LINE L2 -18 3254 2891 2441 68 0 0 chr6 4172639 4172933 -185106621 + AluY SINE Alu 1 294 -17 1830 167 7 0 chr6 4173326 4173632 -185105922 - Tigger3(Golem) DNA MER2_type -1 3028 2721 389 231 77 0 chr6 4173624 4173702 -185105852 - Tigger3(Golem) DNA MER2_type -2935 94 11 * 775 220 146 14 chr6 4173730 4174000 -185105554 + MLT1G1 LTR MaLR 1 260 -330 437 171 40 51 chr6 4174060 4174236 -185105318 + (TAGA)n Simple_repeat Simple_repeat 3 176 0 200 316 144 7 chr6 4175618 4175757 -185103797 - L2 LINE L2 -174 3098 2941 600 269 83 25 chr6 4175880 4176117 -185103437 - MIR SINE MIR 0 262 14 327 297 51 8 chr6 4176157 4176275 -185103279 + MER5A DNA MER1_type 43 165 -24 481 353 22 11 chr6 4176366 4176550 -185103004 + MIR3 SINE MIR 16 201 -7 2586 163 39 34 chr6 4176615 4176653 -185102901 - MLT1C LTR MaLR 0 467 431 2045 95 0 79 chr6 4176653 4176970 -185102584 + AluSq SINE Alu 1 292 -21 2586 163 39 34 chr6 4176970 4177396 -185102158 - MLT1C LTR MaLR -36 431 1 7109 141 47 23 chr6 4177474 4178124 -185101430 + Tigger3b DNA MER2_type 1 695 -2333 1778 164 6 41 chr6 4178124 4178302 -185101252 - AluJo SINE Alu -6 306 142 2022 145 0 7 chr6 4178302 4178598 -185100956 - AluSx SINE Alu -18 294 1 1778 164 6 41 chr6 4178598 4178736 -185100818 - AluJo SINE Alu -170 142 1 7109 141 47 23 chr6 4178736 4179287 -185100267 + Tigger3b DNA MER2_type 695 1231 0 469 247 33 54 chr6 4179565 4179788 -185099766 + L1ME4a LINE L1 5559 5718 -403 996 227 145 93 chr6 4179833 4180578 -185098976 - MER20B DNA MER1_type 0 784 1 253 258 81 32 chr6 4180784 4180908 -185098646 + L1ME4a LINE L1 5992 6121 0 1658 160 7 21 chr6 4180930 4181251 -185098303 + AluSx SINE Alu 1 317 0 1160 193 33 0 chr6 4181266 4181478 -185098076 - MER20 DNA MER1_type 0 219 1 467 279 123 18 chr6 4181480 4181699 -185097855 + MIR SINE MIR 9 250 -12 827 217 16 27 chr6 4183411 4183595 -185095959 + MER5A DNA MER1_type 1 182 -7 1365 195 92 23 chr6 4183612 4183915 -185095639 - MER2 DNA MER2_type 0 345 22 313 370 92 40 chr6 4184494 4184721 -185094833 - L2 LINE L2 -4 3268 3030 4342 133 8 39 chr6 4185114 4185837 -185093717 + MER50 LTR ERV1 34 734 0 206 333 63 0 chr6 4186904 4186967 -185092587 + MIR SINE MIR 23 89 -173 2319 184 29 86 chr6 4187171 4187753 -185091801 + MLT2B3 LTR ERVL 6 554 0 189 291 214 0 chr6 4188068 4188171 -185091383 + L3 LINE CR1 1105 1229 -348 21 0 0 0 chr6 4189114 4189135 -185090419 + AT_rich Low_complexity Low_complexity 1 21 0 2132 122 0 0 chr6 4190549 4190837 -185088717 - AluSg1 SINE Alu -21 288 1 215 303 40 0 chr6 4190890 4190966 -185088588 - MER5A DNA MER1_type -110 79 1 290 297 318 8 chr6 4191767 4192006 -185087548 - L2 LINE L2 -1 3271 2959 27 0 0 0 chr6 4192477 4192504 -185087050 + AT_rich Low_complexity Low_complexity 1 27 0 1751 91 0 28 chr6 4192851 4193104 -185086450 - L1PA14 LINE L1 -530 5631 5386 3431 104 34 8 chr6 4193105 4193604 -185085950 + L1PA14 LINE L1 5650 6161 0 1015 253 48 83 chr6 4193662 4194076 -185085478 + L2 LINE L2 2766 3152 -161 3984 114 22 5 chr6 4194076 4194666 -185084888 - L1MC1 LINE L1 -11 6322 5723 1015 253 48 83 chr6 4194666 4194823 -185084731 + L2 LINE L2 3152 3313 0 414 322 72 11 chr6 4195108 4195373 -185084181 + L1M2 LINE L1 5286 5566 -601 395 298 113 31 chr6 4195615 4195907 -185083647 - MER97c DNA MER1_type? -1 1089 774 738 176 0 40 chr6 4196124 4196272 -185083282 - MER97c DNA MER1_type? -466 624 483 2381 94 7 0 chr6 4196296 4196604 -185082950 - AluSg SINE Alu 0 310 1 1606 208 61 21 chr6 4196604 4196983 -185082571 - MER97b DNA MER1_type? -652 401 8 387 202 34 0 chr6 4197076 4197165 -185082389 - L1M4 LINE L1 -1210 5118 5027 5814 213 37 49 chr6 4197165 4198900 -185080654 + L1 LINE L1 1160 2871 -3917 2709 168 14 0 chr6 4198900 4199412 -185080142 + L1 LINE L1 4960 5478 -1310 7461 182 33 15 chr6 4199428 4201368 -185078186 - L1M4 LINE L1 -4065 1263 3 892 219 214 21 chr6 4201369 4201757 -185077797 - L1M4 LINE L1 -1371 4957 4495 616 232 112 21 chr6 4202280 4202565 -185076989 + L1ME4a LINE L1 5808 6118 -3 767 191 40 12 chr6 4203904 4204077 -185075477 + MER5B DNA MER1_type 1 178 0 400 195 0 37 chr6 4205236 4205318 -185074236 + MER21B LTR ERV1 12 90 -773 2739 228 55 50 chr6 4205340 4206159 -185073395 + MER21B LTR ERV1 19 841 -22 363 248 139 0 chr6 4206787 4206888 -185072666 + MIR SINE MIR 73 187 -75 368 273 169 23 chr6 4206962 4207134 -185072420 - MIR SINE MIR -43 219 23 2017 106 7 0 chr6 4207182 4207457 -185072097 - AluSx SINE Alu 0 312 36 485 263 79 7 chr6 4210152 4210304 -185069250 + MIR3 SINE MIR 24 186 -22 191 326 153 33 chr6 4210434 4210676 -185068878 + L2 LINE L2 2704 2974 -340 2376 87 7 3 chr6 4211497 4211795 -185067759 + AluSq SINE Alu 1 299 -14 3724 210 71 28 chr6 4211803 4213555 -185065999 - L1ME1 LINE L1 -5 6230 4400 534 217 129 42 chr6 4213626 4213843 -185065711 + MER106A DNA MER1_type 1 236 0 1740 309 22 18 chr6 4214048 4214758 -185064796 - L1ME1 LINE L1 -5607 789 77 259 297 76 0 chr6 4215021 4215139 -185064415 + L1MEd LINE L1 6 132 -5987 451 281 16 8 chr6 4215218 4215346 -185064208 + L2 LINE L2 3185 3313 0 988 284 66 33 chr6 4215621 4216078 -185063476 + L1MEd LINE L1 459 930 -5189 338 339 109 16 chr6 4216091 4216283 -185063271 + HAL1 LINE L1 1560 1769 -738 43276 34 25 1 chr6 4216344 4222349 -185057205 - L1PA3 LINE L1 0 6155 2 262 274 110 40 chr6 4222433 4222787 -185056767 + L1M4 LINE L1 4132 4510 -1636 2654 269 148 31 chr6 4222795 4223980 -185055574 - L2 LINE L2 -701 2613 1291 300 347 57 6 chr6 4223981 4224157 -185055397 + L1M4 LINE L1 4961 5145 -1001 1804 309 118 25 chr6 4224158 4224182 -185055372 + L2 LINE L2 1771 1791 -1523 4445 156 85 40 chr6 4224182 4225021 -185054533 + LTR13 LTR ERVK 1 886 -68 2201 103 0 3 chr6 4225021 4225331 -185054223 - AluY SINE Alu -2 309 1 4445 156 85 40 chr6 4225331 4225404 -185054150 + LTR13 LTR ERVK 886 954 0 16542 129 45 7 chr6 4225409 4227695 -185051859 - Tigger4(Zombi) DNA MER2_type 0 2731 328 549 0 0 0 chr6 4227695 4227756 -185051798 + (CA)n Simple_repeat Simple_repeat 2 62 0 16542 129 45 7 chr6 4227756 4228097 -185051457 - Tigger4(Zombi) DNA MER2_type -2403 328 2 1804 309 118 25 chr6 4228097 4229101 -185050453 + L2 LINE L2 1794 2901 -413 426 300 91 36 chr6 4229142 4229362 -185050192 + L2 LINE L2 3014 3245 -68 2240 225 100 26 chr6 4229494 4230653 -185048901 + L1ME2 LINE L1 4853 6130 -34 271 297 0 11 chr6 4230893 4230984 -185048570 + GA-rich Low_complexity Low_complexity 3 92 0 185 178 22 0 chr6 4231018 4231063 -185048491 + GA-rich Low_complexity Low_complexity 1 46 0 289 343 82 33 chr6 4231663 4231908 -185047646 - L2 LINE L2 -10 3262 3006 492 324 24 34 chr6 4232128 4232335 -185047219 + MIR SINE MIR 36 240 -22 1331 255 86 14 chr6 4233112 4233547 -185046007 - MLT1F LTR MaLR -18 524 24 1112 120 0 0 chr6 4233832 4234022 -185045532 - AluSg/x SINE Alu 0 316 127 238 292 124 29 chr6 4234388 4234525 -185045029 - MIR SINE MIR -79 183 34 328 302 13 13 chr6 4234969 4235128 -185044426 + CT-rich Low_complexity Low_complexity 1 159 0 2196 100 0 10 chr6 4236489 4236800 -185042754 - AluY SINE Alu -3 308 1 700 282 29 28 chr6 4237637 4238002 -185041552 + LTR16B LTR ERVL 34 451 -13 266 263 185 24 chr6 4238041 4238246 -185041308 - L2 LINE L2 -529 2785 2548 356 259 70 49 chr6 4238333 4238476 -185041078 + MIR3 SINE MIR 20 165 -43 378 181 14 0 chr6 4238517 4238589 -185040965 - L1MB3 LINE L1 -23 6160 6088 2524 166 32 11 chr6 4238716 4239185 -185040369 - L1MB3 LINE L1 -93 6090 5612 199 152 0 0 chr6 4239504 4239537 -185040017 + MIR3 SINE MIR 167 199 -9 381 311 40 20 chr6 4240501 4240652 -185038902 + LTR16A LTR ERVL 25 178 -272 874 238 123 53 chr6 4241251 4241683 -185037871 + LTR16B LTR ERVL 1 462 -2 213 232 29 58 chr6 4242214 4242283 -185037271 + L2 LINE L2 3132 3198 -74 1817 144 44 0 chr6 4242352 4242650 -185036904 - AluSx SINE Alu -1 311 1 320 271 34 126 chr6 4242837 4243187 -185036367 - L2 LINE L2 -37 3235 2918 5808 107 38 5 chr6 4243489 4243848 -185035706 - L1PA15 LINE L1 -5 6160 5814 387 0 0 0 chr6 4243848 4243891 -185035663 + (TG)n Simple_repeat Simple_repeat 2 44 0 5808 107 38 5 chr6 4243891 4244455 -185035099 - L1PA15 LINE L1 -351 5814 5213 426 94 0 0 chr6 4245241 4245305 -185034249 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 3298 32 0 0 chr6 4245540 4245920 -185033634 + L1PA3 LINE L1 5775 6154 -1 397 232 13 73 chr6 4247035 4247186 -185032368 + MIR3 SINE MIR 10 151 -57 229 279 15 15 chr6 4247390 4247458 -185032096 - L2 LINE L2 0 3313 3246 2527 146 18 18 chr6 4249103 4249263 -185030291 - L1MB3 LINE L1 -2 6181 6022 1658 173 63 39 chr6 4249263 4249644 -185029910 - MLT1B LTR MaLR 0 390 1 2527 146 18 18 chr6 4249644 4249921 -185029633 - L1MB3 LINE L1 -160 6023 5744 247 333 23 0 chr6 4249967 4250054 -185029500 + L2 LINE L2 3184 3272 0 235 281 31 62 chr6 4250070 4250166 -185029388 - MIR SINE MIR -76 186 94 1051 189 19 0 chr6 4250418 4250630 -185028924 + MER20 DNA MER1_type 1 216 -3 506 260 73 50 chr6 4251203 4251422 -185028132 - MIR SINE MIR -14 248 25 2011 160 47 25 chr6 4251524 4251986 -185027568 - MLT2B1 LTR ERVL -1 514 1 897 217 84 57 chr6 4252512 4252844 -185026710 - LTR16A1 LTR ERVL 0 457 117 736 260 12 0 chr6 4255466 4255635 -185023919 - MER5A DNA MER1_type 0 189 19 338 273 102 8 chr6 4255747 4255875 -185023679 - MIR SINE MIR -69 193 54 256 259 71 0 chr6 4255868 4255953 -185023601 - MER5B DNA MER1_type -87 91 1 * 386 292 31 8 chr6 4256324 4256454 -185023100 - LTR33 LTR ERVL 0 521 389 489 255 64 64 chr6 4256487 4256570 -185022984 - LTR33 LTR ERVL -250 271 189 844 241 45 5 chr6 4256570 4256769 -185022785 + MER63A DNA MER1_type 4 210 0 489 255 64 64 chr6 4256769 4256889 -185022665 - LTR33 LTR ERVL -331 190 68 232 281 18 0 chr6 4257285 4257342 -185022212 - L2 LINE L2 -6 3266 3209 525 237 198 20 chr6 4257411 4257812 -185021742 - LTR33A LTR ERVL -5 518 2 2706 163 25 48 chr6 4257984 4258050 -185021504 - MLT2B2 LTR ERVL -2 513 447 1941 111 7 14 chr6 4258050 4258369 -185021185 - AluSx SINE Alu 0 317 1 2706 163 25 48 chr6 4258369 4258823 -185020731 - MLT2B2 LTR ERVL -68 447 3 311 272 39 19 chr6 4259065 4259168 -185020386 - MIR SINE MIR -67 141 37 600 262 13 13 chr6 4259500 4259649 -185019905 + MER63A DNA MER1_type 60 208 -2 766 224 13 69 chr6 4259918 4260150 -185019404 + MIR SINE MIR 44 262 0 510 296 96 50 chr6 4260277 4260557 -185018997 - L3 LINE CR1 -14 1563 1271 191 172 0 0 chr6 4260857 4260886 -185018668 - L3 LINE CR1 -303 1274 1246 299 256 80 16 chr6 4262211 4262336 -185017218 + L2 LINE L2 2132 2264 -1050 1861 140 146 3 chr6 4262420 4262763 -185016791 + Ricksha DNA DNA 30 421 -2825 243 288 85 25 chr6 4263024 4263142 -185016412 + L2 LINE L2 2648 2772 -542 371 244 17 122 chr6 4263150 4263275 -185016279 - MIR SINE MIR -4 258 154 2254 102 0 7 chr6 4263275 4263580 -185015974 - AluSx SINE Alu -9 303 1 371 244 17 122 chr6 4263580 4263626 -185015928 - MIR SINE MIR -108 154 105 217 305 40 46 chr6 4264234 4264385 -185015169 + L2 LINE L2 2919 3068 -204 315 245 91 42 chr6 4265048 4265191 -185014363 + MIR SINE MIR 83 232 -30 217 203 31 62 chr6 4265165 4265229 -185014325 + L2 LINE L2 3252 3313 0 * 1938 123 17 17 chr6 4265527 4265827 -185013727 + AluSq SINE Alu 1 300 -13 259 264 47 28 chr6 4266608 4266714 -185012840 - L3 LINE CR1 -390 1187 1080 268 281 170 0 chr6 4268071 4268183 -185011371 - MIR SINE MIR -71 137 15 200 326 84 21 chr6 4268342 4268437 -185011117 - MIR3 SINE MIR -102 106 6 297 235 47 12 chr6 4268449 4268534 -185011020 - MIR SINE MIR -69 139 52 388 234 171 0 chr6 4269585 4269696 -185009858 - MER91C DNA MER1_type -10 130 1 1405 149 54 0 chr6 4270946 4271187 -185008367 + AluJo SINE Alu 48 301 -11 1813 213 57 31 chr6 4271472 4271917 -185007637 + LTR10B LTR ERV1 1 547 0 9276 243 52 70 chr6 4271917 4275200 -185004354 + HERVI LTR ERV1 1 3223 -4562 9919 224 6 17 chr6 4275205 4277238 -185002316 + HERVI LTR ERV1 4354 6364 -285 681 328 0 0 chr6 4277844 4278042 -185001512 - MIR SINE MIR -5 257 60 245 252 37 37 chr6 4278103 4278210 -185001344 - L1ME4a LINE L1 -48 6073 5967 243 241 81 0 chr6 4278315 4278402 -185001152 - L1ME4a LINE L1 -319 5802 5709 503 209 73 72 chr6 4278406 4278639 -185000915 + MLT1H LTR MaLR 1 278 -271 259 176 189 0 chr6 4278778 4278852 -185000702 + MLT1G LTR MaLR 495 582 -8 237 287 96 37 chr6 4279161 4279297 -185000257 - L1ME4a LINE L1 -595 5526 5383 263 230 0 120 chr6 4279348 4279448 -185000106 - L1ME2 LINE L1 -138 6026 5939 1686 118 8 0 chr6 4279523 4279768 -184999786 - L1MA5A LINE L1 0 6297 6051 1360 150 0 5 chr6 4280269 4280482 -184999072 + AluSx SINE Alu 1 212 -100 365 121 0 0 chr6 4280483 4280541 -184999013 + AluYb8 SINE Alu 77 134 -174 2237 118 0 9 chr6 4280541 4280856 -184998698 + AluSq SINE Alu 1 312 -1 575 122 0 0 chr6 4280857 4280947 -184998607 - L1P LINE L1 -851 5295 5206 2799 46 3 6 chr6 4280947 4281270 -184998284 + L1PA8 LINE L1 5838 6165 -7 234 227 0 0 chr6 4281439 4281483 -184998071 + L2 LINE L2 3219 3262 -10 557 266 117 0 chr6 4281957 4282111 -184997443 - MIR3 SINE MIR -3 205 34 2206 203 40 143 chr6 4283198 4284509 -184995045 + L1ME3 LINE L1 4987 6153 -9 517 177 32 24 chr6 4284509 4284633 -184994921 + L1MB2 LINE L1 6047 6171 0 275 188 42 0 chr6 4284643 4284691 -184994863 + MLT1L LTR MaLR 337 386 -81 21 0 0 0 chr6 4284809 4284830 -184994724 + AT_rich Low_complexity Low_complexity 1 21 0 221 248 239 44 chr6 4285318 4285431 -184994123 - L2 LINE L2 0 3313 3179 495 205 94 60 chr6 4285749 4285983 -184993571 + MLT1L LTR MaLR 38 279 -336 323 284 118 6 chr6 4286038 4286207 -184993347 + MLT1L LTR MaLR 394 581 -34 483 289 8 0 chr6 4286635 4286756 -184992798 - MER5A DNA MER1_type -67 122 1 185 282 99 56 chr6 4286851 4286922 -184992632 + MIR SINE MIR 111 184 -78 298 271 232 22 chr6 4288943 4289124 -184990430 - MIR SINE MIR -38 224 6 210 214 18 36 chr6 4289158 4289214 -184990340 + L2 LINE L2 3215 3269 -3 183 129 0 0 chr6 4290088 4290119 -184989435 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 217 236 91 0 chr6 4290782 4290837 -184988717 + MIR SINE MIR 61 120 -142 803 174 0 0 chr6 4292594 4292715 -184986839 + FLAM_A SINE Alu 1 121 -12 24 0 0 0 chr6 4292859 4292883 -184986671 + AT_rich Low_complexity Low_complexity 1 24 0 10006 159 7 31 chr6 4292943 4296025 -184983529 + L1PA8A LINE L1 5 3071 -3390 201 74 0 0 chr6 4296038 4296065 -184983489 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 18527 112 8 14 chr6 4296065 4298695 -184980859 + L1PA8A LINE L1 3051 5670 -776 2198 63 41 0 chr6 4298695 4298988 -184980566 + AluY SINE Alu 1 304 0 18527 112 8 14 chr6 4298988 4299749 -184979805 + L1PA8A LINE L1 5670 6434 -12 188 349 0 0 chr6 4299886 4299949 -184979605 - L2 LINE L2 -249 3064 3002 197 267 50 0 chr6 4300426 4300486 -184979068 + L2 LINE L2 3250 3312 -1 28 0 0 0 chr6 4300630 4300658 -184978896 + AT_rich Low_complexity Low_complexity 1 28 0 468 252 164 25 chr6 4300789 4300948 -184978606 + MER5A DNA MER1_type 9 189 0 664 52 0 0 chr6 4301493 4301570 -184977984 - MER4B LTR ERV1 0 610 534 251 250 0 0 chr6 4301582 4301634 -184977920 + LTR30 LTR ERV1 1 52 -670 1005 134 38 91 chr6 4301634 4301911 -184977643 + LTR12 LTR ERV1 55 230 -484 275 227 98 30 chr6 4301919 4302051 -184977503 + LTR12 LTR ERV1 142 282 -432 368 186 35 0 chr6 4302053 4302139 -184977415 + LTR30 LTR ERV1 551 639 -83 687 102 0 0 chr6 4302142 4302230 -184977324 + LTR12 LTR ERV1 478 565 -149 334 94 9 13 chr6 4302230 4302290 -184977264 - MLT2D LTR ERVL -370 44 1 457 284 99 12 chr6 4302531 4302693 -184976861 + MIR SINE MIR 8 183 -79 276 231 77 0 chr6 4302718 4302796 -184976758 - L2 LINE L2 -17 3296 3213 598 224 29 81 chr6 4303401 4303774 -184975780 + MLT1D LTR MaLR 20 356 -149 474 264 31 0 chr6 4303844 4303973 -184975581 + L1MEc LINE L1 1509 1641 -4755 361 286 119 30 chr6 4303976 4304144 -184975410 + MIR SINE MIR 68 250 -12 2470 123 37 13 chr6 4304378 4304759 -184974795 - MLT1B LTR MaLR 0 390 1 4860 265 63 34 chr6 4304956 4305796 -184973758 + L1MEc LINE L1 2112 2926 -3289 2109 105 44 0 chr6 4305796 4306092 -184973462 + AluY SINE Alu 1 309 -2 4860 265 63 34 chr6 4306092 4307541 -184972013 + L1MEc LINE L1 2926 4436 -1779 8875 223 70 42 chr6 4307549 4308792 -184970762 + L1MCb LINE L1 180 1387 -5177 1552 211 7 3 chr6 4308792 4309100 -184970454 + AluJo SINE Alu 1 309 -3 8875 223 70 42 chr6 4309100 4309446 -184970108 + L1MCb LINE L1 1387 1722 -4842 2203 138 53 28 chr6 4309446 4309801 -184969753 - THE1B LTR MaLR 0 364 1 8875 223 70 42 chr6 4309801 4312457 -184967097 + L1MCb LINE L1 1722 4630 -1934 2182 118 0 6 chr6 4312457 4312770 -184966784 + AluY SINE Alu 1 311 0 8875 223 70 42 chr6 4312770 4313528 -184966026 + L1MCb LINE L1 4630 5365 -1199 2305 78 0 7 chr6 4313598 4313905 -184965649 - AluSx SINE Alu 0 305 1 1123 8 0 0 chr6 4315552 4315672 -184963882 + 5S rRNA rRNA 1 120 -1 3713 50 2 0 chr6 4315672 4316134 -184963420 - Harlequin LTR ERV1 -6329 567 105 186 216 318 34 chr6 4316216 4316304 -184963250 + MER5A DNA MER1_type 1 113 -76 728 210 24 24 chr6 4316305 4316472 -184963082 + MER5A DNA MER1_type 1 167 -22 194 259 111 0 chr6 4316481 4316535 -184963019 + MER5A DNA MER1_type 110 169 -20 2598 192 65 2 chr6 4316931 4317451 -184962103 + MER74A LTR ERVL 6 558 0 291 329 81 13 chr6 4317852 4318001 -184961553 + MIR SINE MIR 100 258 -4 999 164 66 33 chr6 4318252 4318411 -184961143 + MER5A DNA MER1_type 1 168 -21 2098 135 66 14 chr6 4318411 4318758 -184960796 + MLT1A1 LTR MaLR 1 365 0 999 164 66 33 chr6 4318758 4318781 -184960773 + MER5A DNA MER1_type 168 189 0 1922 144 47 39 chr6 4319220 4319580 -184959974 - MLT1A1 LTR MaLR -2 363 1 497 194 10 10 chr6 4319988 4320091 -184959463 + MER5B DNA MER1_type 73 175 -3 2378 109 0 0 chr6 4320492 4320804 -184958750 - AluSx SINE Alu 0 312 1 2195 171 94 20 chr6 4321056 4321501 -184958053 + MLT2B2 LTR ERVL 1 478 -37 2095 74 4 4 chr6 4321936 4322206 -184957348 + AluSc SINE Alu 39 308 -1 1752 248 47 39 chr6 4322487 4322980 -184956574 + MLT1J LTR MaLR 7 503 -8 1223 174 43 13 chr6 4323138 4323368 -184956186 - MER96B DNA MER1_type? -180 237 1 262 171 0 0 chr6 4323856 4323897 -184955657 - 5S rRNA rRNA -79 42 2 306 0 0 0 chr6 4324141 4324175 -184955379 + (CA)n Simple_repeat Simple_repeat 1 34 0 2903 222 75 48 chr6 4324181 4324969 -184954585 + MER21B LTR ERV1 16 824 -39 4971 150 49 3 chr6 4325751 4326585 -184952969 + L1MA4A LINE L1 4443 5237 -1066 182 61 0 30 chr6 4326585 4326618 -184952936 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 4971 150 49 3 chr6 4326618 4327414 -184952140 + L1MA4A LINE L1 5237 6143 -160 1531 181 69 0 chr6 4327414 4327691 -184951863 + AluJb SINE Alu 1 296 -16 1986 136 0 10 chr6 4327738 4328033 -184951521 - L1PB1 LINE L1 -1 6150 5859 2283 82 38 0 chr6 4328033 4328324 -184951230 + AluSg SINE Alu 1 302 -8 259 254 16 32 chr6 4328476 4328539 -184951015 - L1M3c LINE L1 -6078 63 2 291 200 125 0 chr6 4328555 4328635 -184950919 - L1MC3 LINE L1 -8 7777 7688 222 303 13 0 chr6 4328642 4328718 -184950836 - L2 LINE L2 -2382 932 856 996 255 111 12 chr6 4328727 4329052 -184950502 - MLT1I LTR MaLR -25 384 28 2658 283 27 35 chr6 4329053 4329879 -184949675 - L2 LINE L2 -2479 835 17 309 238 38 12 chr6 4330187 4330267 -184949287 - L2 LINE L2 -1877 1437 1356 757 252 59 64 chr6 4330280 4330660 -184948894 - L1M4 LINE L1 -1602 4544 4165 2314 109 0 3 chr6 4330660 4330971 -184948583 - AluSg SINE Alu 0 310 1 757 252 59 64 chr6 4330971 4331030 -184948524 - L1M4 LINE L1 -1981 4165 4107 313 287 39 62 chr6 4331042 4331300 -184948254 - L1MEd LINE L1 -5164 955 704 827 198 36 30 chr6 4331301 4331468 -184948086 - FRAM SINE Alu -16 160 1 269 279 51 0 chr6 4331468 4331547 -184948007 - L1MEd LINE L1 -5416 703 621 4522 169 52 6 chr6 4331680 4332500 -184947054 - L1MD1 LINE L1 0 6242 5385 1895 33 0 5 chr6 4332714 4332928 -184946626 - L1PA5 LINE L1 -3 6151 5939 1455 251 48 5 chr6 4332928 4333346 -184946208 - L1MD1 LINE L1 -745 5401 4966 1283 276 59 46 chr6 4333519 4334080 -184945474 + Charlie7 DNA MER1_type 120 687 -1925 490 239 39 72 chr6 4334096 4334276 -184945278 - MLT1J LTR MaLR -12 499 326 302 164 0 0 chr6 4334277 4334338 -184945216 - L1MC3 LINE L1 -727 7058 6998 * 857 54 1 1 chr6 4334313 4334338 -184945216 + L1P LINE L1 5225 5249 -897 1446 19 0 0 chr6 4334338 4334495 -184945059 - L1PA4 LINE L1 -5 6150 5994 857 54 1 1 chr6 4334495 4334599 -184944955 + L1P LINE L1 5248 5354 -792 180 0 0 0 chr6 4335364 4335384 -184944170 + (TG)n Simple_repeat Simple_repeat 2 21 0 325 181 38 9 chr6 4336214 4336319 -184943235 + (TA)n Simple_repeat Simple_repeat 1 108 0 323 299 132 29 chr6 4336632 4336806 -184942748 - MIR SINE MIR -1 261 70 182 36 0 36 chr6 4336952 4336980 -184942574 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1211 55 0 0 chr6 4336980 4337125 -184942429 - MER107 DNA MER1_type -52 145 1 460 236 9 9 chr6 4337165 4337271 -184942283 + MER5B DNA MER1_type 73 178 0 334 307 9 0 chr6 4337544 4337658 -184941896 + L1ME LINE L1 5458 5572 -598 22 0 0 0 chr6 4337826 4337848 -184941706 + AT_rich Low_complexity Low_complexity 1 22 0 813 139 12 78 chr6 4338193 4338359 -184941195 + AluJo SINE Alu 85 239 -73 326 181 0 14 chr6 4338394 4338466 -184941088 + GA-rich Low_complexity Low_complexity 4 74 0 261 139 0 0 chr6 4338565 4338608 -184940946 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 1991 254 75 34 chr6 4338873 4339731 -184939823 + L1MEc LINE L1 499 1391 -5005 275 259 76 0 chr6 4340542 4340673 -184938881 - L1ME4a LINE L1 -3 6118 5978 275 177 51 0 chr6 4340996 4341075 -184938479 + (TAA)n Simple_repeat Simple_repeat 1 83 0 324 286 9 108 chr6 4341129 4341342 -184938212 - L1M4 LINE L1 -2055 4091 3900 269 324 59 0 chr6 4341555 4341657 -184937897 - L2 LINE L2 -932 2382 2275 278 296 241 0 chr6 4342288 4342396 -184937158 - MIR SINE MIR -77 185 52 235 274 71 36 chr6 4342485 4342569 -184936985 - MIR SINE MIR -58 204 118 509 270 77 62 chr6 4343410 4343669 -184935885 - MLT1J LTR MaLR -4 507 245 1954 192 25 25 chr6 4344014 4344379 -184935175 - MLT1A1 LTR MaLR 0 365 1 229 255 177 21 chr6 4344381 4344522 -184935032 - L2 LINE L2 -11 3302 3140 703 241 294 0 chr6 4345477 4345797 -184933757 + Charlie2a DNA MER1_type 7 420 -2442 898 246 29 14 chr6 4345831 4346107 -184933447 + Charlie2a DNA MER1_type 738 1017 -1845 420 182 0 23 chr6 4346104 4346192 -184933362 + Charlie2a DNA MER1_type 2748 2833 -29 * 207 219 162 57 chr6 4347287 4347392 -184932162 - L2 LINE L2 -2 3270 3155 245 278 0 0 chr6 4348564 4348636 -184930918 + tRNA-Ile-ATT tRNA tRNA 3 74 -3 234 216 0 0 chr6 4349981 4350032 -184929522 + MER116 DNA Mariner 25 75 -5 1778 175 3 19 chr6 4350119 4350427 -184929127 + AluJo SINE Alu 1 303 -9 693 294 58 39 chr6 4350436 4350817 -184928737 + L1ME4a LINE L1 5377 5764 -357 408 327 62 34 chr6 4350822 4351030 -184928524 + MIR SINE MIR 13 226 -36 332 212 73 53 chr6 4351208 4351359 -184928195 + L1ME4a LINE L1 5964 6117 -4 1881 137 135 83 chr6 4351761 4352205 -184927349 + MLT1C LTR MaLR 1 467 0 1681 167 50 83 chr6 4352707 4353091 -184926463 + MLT1A2 LTR MaLR 4 374 0 600 274 71 56 chr6 4353156 4353356 -184926198 - MLT1J LTR MaLR -238 273 67 2204 111 20 0 chr6 4353356 4353662 -184925892 - AluSx SINE Alu 0 312 1 600 274 71 56 chr6 4353662 4353713 -184925841 - MLT1J LTR MaLR -444 67 18 198 277 241 9 chr6 4354179 4354291 -184925263 + MIR3 SINE MIR 19 156 -52 701 271 35 66 chr6 4354378 4354819 -184924735 + LTR35 LTR ERV1 134 556 0 2233 106 0 28 chr6 4355577 4355898 -184923656 - AluSq SINE Alu -1 312 1 280 200 18 0 chr6 4356144 4356199 -184923355 + L2 LINE L2 3257 3312 -1 386 264 157 31 chr6 4356638 4356797 -184922757 - MER5A DNA MER1_type -6 183 5 3659 7 0 3 chr6 4357011 4357554 -184922000 + L1P1 LINE L1 5119 5660 -495 185 74 56 37 chr6 4357558 4357612 -184921942 + A-rich Low_complexity Low_complexity 1 55 0 410 151 0 27 chr6 4358113 4358186 -184921368 - MER20 DNA MER1_type 0 219 149 4831 100 14 5 chr6 4358186 4358824 -184920730 - LTR9B LTR ERV1 0 644 1 3468 128 16 15 chr6 4358837 4359383 -184920171 + LTR10A LTR ERV1 1 547 -62 716 154 0 99 chr6 4359394 4359556 -184919998 - MER20 DNA MER1_type -73 146 1 305 217 85 40 chr6 4361021 4361171 -184918383 + L1ME4a LINE L1 5698 5854 -267 363 276 20 53 chr6 4361209 4361361 -184918193 + L1ME4a LINE L1 5975 6121 0 1099 189 112 18 chr6 4361400 4361897 -184917657 + MLT1E1 LTR MaLR 3 654 0 339 314 69 36 chr6 4362172 4362449 -184917105 + L2 LINE L2 1103 1388 -1926 5188 100 10 13 chr6 4362529 4363222 -184916332 - LTR8 LTR ERV1 0 691 1 1122 265 21 4 chr6 4363380 4363659 -184915895 - MER87 LTR ERV1 -48 493 210 245 292 124 11 chr6 4363731 4363820 -184915734 - LTR8 LTR ERV1 -566 125 27 466 306 165 16 chr6 4363877 4364448 -184915106 + L2 LINE L2 1614 2269 -1045 268 348 24 40 chr6 4364448 4364626 -184914928 + L2 LINE L2 2457 2631 -683 749 202 60 24 chr6 4364626 4364794 -184914760 + MER5B DNA MER1_type 1 174 -4 268 348 24 40 chr6 4364794 4364868 -184914686 + L2 LINE L2 2631 2705 -609 764 219 0 0 chr6 4364876 4364999 -184914555 + FLAM_C SINE Alu 1 123 -10 1223 205 73 14 chr6 4365031 4365319 -184914235 - MLT1A2 LTR MaLR -66 308 4 197 325 93 73 chr6 4365463 4365614 -184913940 + L2 LINE L2 3108 3261 -11 481 285 8 0 chr6 4365835 4365965 -184913589 + MIR SINE MIR 88 218 -44 1060 152 12 0 chr6 4366907 4367071 -184912483 - AluJb SINE Alu -146 166 1 1891 205 21 36 chr6 4367074 4367547 -184912007 - L1 LINE L1 -817 5329 4864 778 185 25 37 chr6 4367550 4367712 -184911842 - MLT1A2 LTR MaLR -214 160 1 776 135 0 0 chr6 4368989 4369100 -184910454 + L1 LINE L1 4864 4974 -1172 545 42 14 0 chr6 4370543 4370615 -184908939 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 468 48 0 0 chr6 4370839 4370902 -184908652 + (CA)n Simple_repeat Simple_repeat 1 63 0 222 261 0 0 chr6 4371369 4371415 -184908139 + (TA)n Simple_repeat Simple_repeat 1 46 0 1360 177 129 33 chr6 4371434 4371768 -184907786 - MLT2D LTR ERVL -48 366 1 2068 111 4 0 chr6 4371908 4372187 -184907367 + AluSx SINE Alu 16 295 -17 273 230 115 35 chr6 4372584 4372671 -184906883 - L2 LINE L2 -8 3305 3212 373 289 39 27 chr6 4372744 4373007 -184906547 + L2 LINE L2 2711 2977 -336 2554 217 60 19 chr6 4373230 4373793 -184905761 - MLT1E LTR MaLR 0 593 8 239 293 135 30 chr6 4374902 4375035 -184904519 + MIR SINE MIR 21 167 -95 3083 145 25 33 chr6 4375127 4375678 -184903876 + LTR10A LTR ERV1 1 547 -62 2065 173 138 50 chr6 4376098 4376600 -184902954 - LTR10B LTR ERV1 -1 546 1 1911 155 54 57 chr6 4376643 4377029 -184902525 - MLT1B LTR MaLR -5 385 1 1678 175 22 0 chr6 4378469 4378743 -184900811 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr6 4378743 4378764 -184900790 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 981 191 5 5 chr6 4378979 4379167 -184900387 - MER53 DNA DNA 0 189 2 263 261 142 30 chr6 4379326 4379460 -184900094 - MLT1L LTR MaLR -49 566 418 2551 69 0 0 chr6 4379858 4380161 -184899393 - AluSc SINE Alu -6 303 1 2483 74 0 16 chr6 4380163 4380472 -184899082 - AluY SINE Alu -7 304 1 22 0 0 0 chr6 4380474 4380496 -184899058 + AT_rich Low_complexity Low_complexity 1 22 0 1631 68 42 13 chr6 4380496 4380732 -184898822 - L1MA1 LINE L1 0 6302 6060 202 309 62 0 chr6 4381617 4381698 -184897856 + MIR SINE MIR 45 130 -78 628 231 158 60 chr6 4381698 4382066 -184897488 - MLT1J LTR MaLR 0 511 108 285 253 13 0 chr6 4382218 4382297 -184897257 - L2 LINE L2 0 3313 3234 2227 101 30 0 chr6 4382549 4382845 -184896709 + AluSc SINE Alu 1 305 -4 610 329 43 37 chr6 4383060 4383434 -184896120 + L1ME4a LINE L1 5518 5893 -228 2167 109 0 0 chr6 4383463 4383738 -184895816 - AluSg SINE Alu -34 276 2 190 286 0 16 chr6 4384368 4384431 -184895123 - L2 LINE L2 -73 3199 3138 1929 159 3 0 chr6 4384661 4384956 -184894598 - AluJo SINE Alu -16 296 1 375 274 149 23 chr6 4385122 4385337 -184894217 - MIR SINE MIR -1 261 20 290 252 19 37 chr6 4385341 4385465 -184894089 - MIR3 SINE MIR -46 162 63 1039 200 33 79 chr6 4385998 4386328 -184893226 + L1MA10 LINE L1 6018 6332 -2 1260 197 24 14 chr6 4386347 4386636 -184892918 + L1MB8 LINE L1 5881 6172 -6 390 274 143 6 chr6 4386683 4386858 -184892696 + MARNA DNA Mariner 211 409 -177 412 264 104 42 chr6 4386987 4387180 -184892374 + MIR SINE MIR 58 262 0 2532 170 25 48 chr6 4388554 4389114 -184890440 - L1MA10 LINE L1 -1 6333 5787 1200 182 18 1 chr6 4389116 4389421 -184890133 - MER2 DNA MER2_type -1 344 1 1207 124 23 0 chr6 4389425 4389602 -184889952 - L1MA10 LINE L1 -552 5782 5602 2322 155 38 5 chr6 4389606 4390032 -184889522 - L1MB3 LINE L1 -2 6181 5742 419 265 8 17 chr6 4390039 4390156 -184889398 + Charlie8 DNA MER1_type 91 206 -2211 306 334 175 16 chr6 4390702 4391010 -184888544 - L3b LINE CR1 -125 1458 1102 504 222 163 7 chr6 4391540 4391693 -184887861 + MER5A DNA MER1_type 13 189 0 366 169 0 0 chr6 4392256 4392315 -184887239 + MER20 DNA MER1_type 159 217 -2 273 61 0 0 chr6 4392362 4392395 -184887159 + MLT1B LTR MaLR 1 33 -357 375 265 48 78 chr6 4392397 4392523 -184887031 + L2 LINE L2 1521 1642 -1672 1059 188 32 37 chr6 4392523 4392741 -184886813 + MER20 DNA MER1_type 1 217 -2 375 265 48 78 chr6 4392741 4392780 -184886774 + L2 LINE L2 1642 1681 -1633 1325 184 126 36 chr6 4392788 4392960 -184886594 + MLT1B LTR MaLR 1 156 -234 189 0 0 0 chr6 4392960 4392981 -184886573 + (TC)n Simple_repeat Simple_repeat 2 22 0 1325 184 126 36 chr6 4392981 4393166 -184886388 + MLT1B LTR MaLR 156 390 0 1469 249 29 31 chr6 4393193 4393249 -184886305 + L1ME1 LINE L1 5742 5797 -369 1870 137 67 25 chr6 4393249 4393607 -184885947 - THE1C LTR MaLR 0 375 3 9616 125 26 38 chr6 4393609 4395204 -184884350 - THE1C-int LTR MaLR 0 1580 4 1603 149 109 34 chr6 4395207 4395556 -184883998 - THE1C LTR MaLR 0 375 1 1469 249 29 31 chr6 4395556 4395913 -184883641 + L1ME1 LINE L1 5800 6161 -5 953 290 172 18 chr6 4395955 4396795 -184882759 + L2 LINE L2 1706 2686 -628 1752 183 93 11 chr6 4396795 4397161 -184882393 + MSTD LTR MaLR 1 396 0 953 290 172 18 chr6 4397161 4397193 -184882361 + L2 LINE L2 2686 2712 -602 2252 95 3 0 chr6 4397514 4397822 -184881732 + AluSq SINE Alu 1 309 0 238 274 59 0 chr6 4399864 4399966 -184879588 + L1ME LINE L1 5692 5799 -363 1200 128 12 0 chr6 4400125 4400297 -184879257 + AluSg/x SINE Alu 139 312 0 283 198 244 0 chr6 4400460 4400546 -184879008 + HsTC2 DNA Tc2 28 134 -1764 * 544 167 49 42 chr6 4400545 4400689 -184878865 + HsTC2 DNA Tc2 1647 1791 -107 474 243 126 14 chr6 4400690 4400955 -184878599 + L2 LINE L2 2702 3006 -307 1114 257 119 48 chr6 4401115 4401745 -184877809 + L1MC4 LINE L1 7367 8041 -1 454 296 21 0 chr6 4403806 4403948 -184875606 + MIR SINE MIR 80 224 -38 491 201 79 126 chr6 4404277 4404491 -184875063 + MIR SINE MIR 51 254 -8 2145 58 91 4 chr6 4405794 4406069 -184873485 - AluY SINE Alu -12 299 1 3427 54 16 16 chr6 4407041 4407485 -184872069 + L1PA8 LINE L1 5726 6169 -3 453 317 0 12 chr6 4407583 4407744 -184871810 - MIR SINE MIR -6 256 98 288 304 53 70 chr6 4408937 4409108 -184870446 - MER5B DNA MER1_type -7 171 4 395 233 0 0 chr6 4409585 4409658 -184869896 + Tigger3(Golem) DNA MER2_type 3 75 -2954 611 196 0 0 chr6 4409658 4409765 -184869789 - FLAM_C SINE Alu -35 108 2 475 217 57 23 chr6 4409767 4409942 -184869612 + L1ME1 LINE L1 4279 4459 -1687 * 1391 226 72 24 chr6 4409928 4410074 -184869480 + L1ME1 LINE L1 5643 5781 -385 2236 150 25 34 chr6 4410074 4410481 -184869073 - MER57A LTR ERV1 0 403 1 1391 226 72 24 chr6 4410481 4410749 -184868805 + L1ME1 LINE L1 5781 6077 -89 1518 201 43 23 chr6 4410781 4411179 -184868375 + MER97b DNA MER1_type? 454 859 -194 379 185 46 28 chr6 4411411 4411519 -184868035 + L1 LINE L1 4884 4993 -1153 363 269 36 16 chr6 4411546 4411726 -184867828 + L1M4b LINE L1 24 487 -6368 230 217 14 14 chr6 4411831 4411900 -184867654 + (TA)n Simple_repeat Simple_repeat 1 69 0 2028 157 26 103 chr6 4411900 4412128 -184867426 + Tigger2a DNA MER2_type 1 176 -2532 2044 123 4 0 chr6 4412128 4412405 -184867149 - AluSx SINE Alu -30 282 5 2028 157 26 103 chr6 4412405 4412641 -184866913 + Tigger2a DNA MER2_type 176 429 -5 797 181 6 19 chr6 4412865 4413025 -184866529 + L1MB7 LINE L1 15 172 -6370 * 13965 153 38 10 chr6 4413018 4415284 -184864270 + L1M1 LINE L1 1361 3752 -3813 1782 152 0 4 chr6 4415284 4415568 -184863986 + AluSx SINE Alu 28 310 0 13965 153 38 10 chr6 4415568 4416679 -184862875 + L1M1 LINE L1 3752 4831 -2734 1280 158 27 97 chr6 4416676 4416917 -184862637 + L1MB7 LINE L1 901 1114 -5428 * 2369 84 3 0 chr6 4416917 4417213 -184862341 - AluY SINE Alu -14 297 1 1280 158 27 97 chr6 4417213 4417300 -184862254 + L1MB7 LINE L1 1114 1206 -5336 2008 204 42 8 chr6 4418529 4419005 -184860549 + L1MB7 LINE L1 1188 1679 -4863 3464 199 60 12 chr6 4419019 4419802 -184859752 - MER21B LTR ERV1 0 863 2 1441 235 48 29 chr6 4419803 4420279 -184859275 + L1MB7 LINE L1 1685 2169 -4477 1246 276 10 17 chr6 4420667 4421149 -184858405 + L1MB7 LINE L1 2268 2746 -3900 5723 127 41 7 chr6 4421149 4422266 -184857288 + L1PB3 LINE L1 5006 6154 0 1633 158 18 40 chr6 4422281 4422559 -184856995 + AluSx SINE Alu 1 272 -40 221 0 0 33 chr6 4422575 4422605 -184856949 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 585 211 62 23 chr6 4422756 4422884 -184856670 + AluJo SINE Alu 3 135 -177 9434 199 52 32 chr6 4422898 4424420 -184855134 + L1MB7 LINE L1 2732 4222 -2460 203 61 30 0 chr6 4424420 4424453 -184855101 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1662 189 4 0 chr6 4424455 4424735 -184854819 - AluJb SINE Alu -31 281 1 9434 199 52 32 chr6 4424735 4425125 -184854429 + L1MB7 LINE L1 4222 4603 -2079 237 65 0 0 chr6 4425125 4425156 -184854398 + (CA)n Simple_repeat Simple_repeat 2 32 0 9434 199 52 32 chr6 4425156 4426885 -184852669 + L1MB7 LINE L1 4603 6545 -137 621 72 0 0 chr6 4426885 4426968 -184852586 + (TG)n Simple_repeat Simple_repeat 1 83 0 9434 199 52 32 chr6 4426968 4427090 -184852464 + L1MB7 LINE L1 6545 6663 -19 4462 226 42 46 chr6 4427308 4428069 -184851485 + L1MD3 LINE L1 3239 4001 -2145 186 43 0 0 chr6 4428069 4428092 -184851462 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2264 110 0 0 chr6 4428092 4428391 -184851163 - AluSx SINE Alu -13 299 1 4462 226 42 46 chr6 4428391 4428695 -184850859 + L1MD3 LINE L1 4000 4304 -1842 2453 146 50 8 chr6 4428695 4429073 -184850481 + MSTD LTR MaLR 1 394 -2 4462 226 42 46 chr6 4429073 4429380 -184850174 + L1MD3 LINE L1 4304 4608 -1538 6171 155 45 8 chr6 4429386 4431216 -184848338 + L1MA8 LINE L1 4287 6290 -1 2458 211 47 77 chr6 4431220 4432080 -184847474 + L1MD3 LINE L1 4610 5439 -727 293 210 200 10 chr6 4432084 4432184 -184847370 + FLAM_A SINE Alu 6 124 -9 3200 245 117 29 chr6 4432186 4433451 -184846103 + L1MD3 LINE L1 5435 6811 -1184 769 235 107 38 chr6 4433461 4433750 -184845804 + L2 LINE L2 3005 3313 0 758 242 82 6 chr6 4433904 4434086 -184845468 - MER91A DNA MER1_type 0 196 1 4235 152 31 11 chr6 4435316 4436060 -184843494 + L1MB3 LINE L1 5289 6047 -136 665 292 79 46 chr6 4436060 4436491 -184843063 + L1ME4a LINE L1 5526 5970 -151 233 221 58 0 chr6 4436504 4436590 -184842964 + L1ME4a LINE L1 6031 6121 0 6121 66 15 4 chr6 4437044 4437800 -184841754 + L1PA7 LINE L1 5383 6146 -8 186 71 0 0 chr6 4437805 4437833 -184841721 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 333 157 49 10 chr6 4437898 4438000 -184841554 + CT-rich Low_complexity Low_complexity 1 106 0 769 307 66 0 chr6 4438942 4439183 -184840371 + MIR SINE MIR 1 257 -5 1193 118 6 0 chr6 4439202 4439363 -184840191 + AluSx SINE Alu 1 162 -150 225 325 79 0 chr6 4440821 4440935 -184838619 + L2 LINE L2 2916 3038 -234 343 307 62 20 chr6 4441025 4441183 -184838371 + MIR SINE MIR 30 191 -66 230 283 97 21 chr6 4441392 4441537 -184838017 - MER5B DNA MER1_type -2 176 21 204 229 33 33 chr6 4441557 4441618 -184837936 + CT-rich Low_complexity Low_complexity 6 66 0 240 289 29 29 chr6 4442242 4442346 -184837208 + L2 LINE L2 2935 3038 -234 2013 108 52 3 chr6 4444091 4444377 -184835177 + AluSx SINE Alu 1 300 -12 199 154 0 26 chr6 4444966 4445005 -184834549 - L2 LINE L2 -79 3234 3197 792 128 21 14 chr6 4445255 4445396 -184834158 + L1MA8 LINE L1 6146 6287 -4 1780 130 19 52 chr6 4445404 4445711 -184833843 + AluSx SINE Alu 1 297 -15 1653 76 23 2 chr6 4446291 4446670 -184832884 - MLT2A2 LTR ERVL 0 453 1 350 254 0 18 chr6 4448005 4448170 -184831384 + (GTATG)n Simple_repeat Simple_repeat 3 164 0 432 239 150 60 chr6 4448369 4448536 -184831018 - MIR SINE MIR -31 231 50 450 311 0 16 chr6 4449265 4449448 -184830106 + (CA)n Simple_repeat Simple_repeat 1 180 0 275 275 0 13 chr6 4449641 4449790 -184829764 + (GTATG)n Simple_repeat Simple_repeat 1 147 0 267 294 0 0 chr6 4450899 4450967 -184828587 + (GCATG)n Simple_repeat Simple_repeat 5 72 0 346 218 141 54 chr6 4451212 4451407 -184828147 - MIR SINE MIR -29 233 16 716 262 83 78 chr6 4451673 4452081 -184827473 - MLT1J LTR MaLR -78 433 24 2561 120 10 10 chr6 4452555 4452939 -184826615 + MLT1B LTR MaLR 7 390 0 1506 160 94 0 chr6 4454098 4454354 -184825200 + AluJo SINE Alu 1 280 -32 2059 117 7 3 chr6 4454394 4454692 -184824862 + AluSc SINE Alu 1 299 -10 219 333 167 0 chr6 4455147 4455267 -184824287 + MIR3 SINE MIR 51 190 -18 1027 238 19 0 chr6 4456141 4456347 -184823207 - MER63A DNA MER1_type 0 210 1 184 267 0 0 chr6 4457283 4457328 -184822226 + L2 LINE L2 3269 3313 0 32 0 0 0 chr6 4458818 4458850 -184820704 + AT_rich Low_complexity Low_complexity 1 32 0 250 256 168 57 chr6 4459229 4459526 -184820028 - L1MEd LINE L1 -3222 2907 2578 317 274 79 66 chr6 4459563 4459671 -184819883 - L1MEd LINE L1 -3636 2493 2388 2143 129 3 0 chr6 4459671 4459980 -184819574 - AluSx SINE Alu -2 310 1 317 274 79 66 chr6 4459980 4460174 -184819380 - L1MEd LINE L1 -3741 2388 2187 1964 141 30 3 chr6 4460188 4460492 -184819062 + AluJb SINE Alu 1 312 0 514 295 76 55 chr6 4461033 4461491 -184818063 - HAL1 LINE L1 -742 1765 1298 288 171 0 0 chr6 4461500 4461541 -184818013 - Tigger5 DNA MER2_type 0 2323 2283 256 233 0 0 chr6 4461549 4461592 -184817962 + Tigger5 DNA MER2_type 2278 2320 -3 * 326 247 0 27 chr6 4461592 4461661 -184817893 - Tigger5 DNA MER2_type -2256 67 1 357 300 66 37 chr6 4461702 4461945 -184817609 - L1MEd LINE L1 -4975 1144 895 1764 136 0 8 chr6 4462131 4462388 -184817166 + AluSx SINE Alu 43 297 -15 3053 25 3 0 chr6 4462388 4462745 -184816809 - L1PA3 LINE L1 -1005 5141 4784 8294 22 0 0 chr6 4462745 4463817 -184815737 + L1PA3 LINE L1 5141 6209 0 333 157 49 10 chr6 4463853 4463955 -184815599 + CT-rich Low_complexity Low_complexity 1 106 0 807 299 66 0 chr6 4464897 4465138 -184814416 + MIR SINE MIR 1 257 -5 1769 154 4 7 chr6 4465157 4465436 -184814118 + AluJb SINE Alu 1 278 -34 446 0 19 0 chr6 4465439 4465493 -184814061 + (TTAAA)n Simple_repeat Simple_repeat 1 55 0 185 274 171 77 chr6 4465518 4466125 -184813429 + L2 LINE L2 2167 2830 -484 395 328 100 45 chr6 4466152 4466463 -184813091 + L2 LINE L2 2922 3249 -23 506 262 56 76 chr6 4466687 4466863 -184812691 + L1MC/D LINE L1 5196 5374 -1024 1629 185 3 27 chr6 4466863 4467160 -184812394 - AluJb SINE Alu -22 290 1 506 262 56 76 chr6 4467160 4467427 -184812127 + L1MC/D LINE L1 5374 5622 -776 402 255 80 92 chr6 4467738 4467989 -184811565 + MLT1L LTR MaLR 10 257 -358 2839 218 174 55 chr6 4468040 4468986 -184810568 + L1MC4a LINE L1 6442 7500 -308 2162 121 0 0 chr6 4469040 4469348 -184810206 + AluSx SINE Alu 1 308 0 374 280 9 9 chr6 4469380 4469487 -184810067 + L1MC4 LINE L1 7795 7901 -141 234 180 0 66 chr6 4469488 4469549 -184810005 + L1MC4 LINE L1 7986 8042 0 286 279 240 6 chr6 4469725 4469904 -184809650 + MLT1L LTR MaLR 395 615 0 2815 19 0 6 chr6 4470007 4470323 -184809231 + AluYb8 SINE Alu 1 314 -4 528 209 34 155 chr6 4470787 4470823 -184808731 + L1MC4 LINE L1 6509 6548 -1494 2148 93 0 10 chr6 4470823 4471114 -184808440 + AluSx SINE Alu 1 288 -24 528 209 34 155 chr6 4471114 4471374 -184808180 + L1MC4 LINE L1 6548 6769 -1273 299 284 101 47 chr6 4471680 4471828 -184807726 + L2 LINE L2 3109 3264 -8 633 192 0 48 chr6 4472461 4472586 -184806968 - MLT1E2 LTR MaLR -3 623 505 1434 164 34 74 chr6 4472586 4472681 -184806873 - AluJo SINE Alu 0 312 215 4610 104 30 47 chr6 4472681 4473384 -184806170 + LTR8 LTR ERV1 1 691 0 1434 164 34 74 chr6 4473384 4473611 -184805943 - AluJo SINE Alu -97 215 3 1593 240 109 27 chr6 4473613 4474088 -184805466 - MLT1E2 LTR MaLR -112 514 1 791 189 0 0 chr6 4474406 4474538 -184805016 + FLAM_C SINE Alu 2 133 0 237 247 148 0 chr6 4475019 4475100 -184804454 - L2 LINE L2 -36 3277 3185 1811 179 43 93 chr6 4476382 4476867 -184802687 - MLT2C2 LTR ERVL -3 461 1 389 294 62 20 chr6 4478160 4478306 -184801248 - L2 LINE L2 0 3272 3121 369 62 0 0 chr6 4478318 4478366 -184801188 + (ATG)n Simple_repeat Simple_repeat 3 50 0 736 207 0 0 chr6 4480541 4480676 -184798878 + FLAM_C SINE Alu 2 136 -7 573 306 120 0 chr6 4480690 4480906 -184798648 + MIR SINE MIR 20 261 -1 507 270 199 5 chr6 4482320 4482516 -184797038 + MIR SINE MIR 2 235 -27 * 788 226 37 26 chr6 4482514 4482704 -184796850 + MIR SINE MIR 68 259 -3 321 179 0 0 chr6 4482709 4482793 -184796761 + (ATG)n Simple_repeat Simple_repeat 1 84 0 1190 213 49 4 chr6 4482814 4483058 -184796496 - LTR8 LTR ERV1 -436 255 1 377 216 14 0 chr6 4483060 4483134 -184796420 + MER5A DNA MER1_type 16 90 -99 854 251 117 42 chr6 4484255 4484657 -184794897 - L1ME3A LINE L1 -130 6032 5601 5618 101 15 16 chr6 4484664 4485327 -184794227 - L1PB1 LINE L1 0 6151 5488 1854 129 3 24 chr6 4485327 4485646 -184793908 - AluSx SINE Alu 0 312 1 5618 101 15 16 chr6 4485646 4485842 -184793712 - L1PB1 LINE L1 -663 5488 5293 1936 67 0 0 chr6 4485855 4486093 -184793461 - LTR17 LTR ERV1 -454 326 89 8257 197 13 38 chr6 4486095 4487923 -184791631 - L1PB1 LINE L1 -852 5294 3516 2248 93 0 0 chr6 4487923 4488223 -184791331 - AluY SINE Alu -11 300 1 8257 197 13 38 chr6 4488223 4488347 -184791207 - L1PB1 LINE L1 -2630 3516 3390 580 268 46 15 chr6 4488459 4488782 -184790772 - L1ME3A LINE L1 -641 5525 5195 2146 111 0 7 chr6 4489482 4489788 -184789766 - AluSx SINE Alu -8 304 1 3041 159 46 9 chr6 4489792 4490376 -184789178 - L1MB3 LINE L1 -1 6182 5577 501 286 12 42 chr6 4490488 4490656 -184788898 - MIR3 SINE MIR 0 208 46 333 0 0 0 chr6 4491054 4491091 -184788463 + (CA)n Simple_repeat Simple_repeat 2 38 0 205 184 26 0 chr6 4491765 4491803 -184787751 + MIR SINE MIR 108 146 -62 359 320 153 0 chr6 4492726 4492876 -184786678 - MER5B DNA MER1_type -5 173 1 249 243 49 53 chr6 4493247 4493418 -184786136 - MIR SINE MIR -50 212 43 438 209 12 0 chr6 4493532 4493618 -184785936 - MER81 DNA DNA -8 106 20 296 188 29 14 chr6 4494044 4494113 -184785441 - Charlie4a DNA MER1_type 0 508 439 1783 183 7 0 chr6 4494113 4494525 -184785029 - AluJb SINE Alu 0 414 1 1533 204 90 0 chr6 4494566 4494910 -184784644 - Charlie4a DNA MER1_type -133 375 1 1595 244 40 14 chr6 4495036 4495478 -184784076 + MLT1C LTR MaLR 1 654 0 214 297 48 69 chr6 4495810 4495955 -184783599 - MIR3 SINE MIR -7 201 60 277 233 78 33 chr6 4496367 4496457 -184783097 - LTR16A1 LTR ERVL -30 427 334 303 274 0 0 chr6 4496563 4496636 -184782918 - MER63 DNA MER1_type -11 1050 978 458 147 0 40 chr6 4496638 4496713 -184782841 - MER63 DNA MER1_type -312 749 678 259 288 0 0 chr6 4497788 4497868 -184781686 + MER116 DNA Mariner 1 80 0 300 330 93 8 chr6 4498007 4498125 -184781429 + MIR3 SINE MIR 12 139 -69 1102 152 39 30 chr6 4499288 4499506 -184780048 + L1MB3 LINE L1 5854 6100 -71 1500 202 3 3 chr6 4499506 4499798 -184779756 + AluJo SINE Alu 6 297 -15 1102 152 39 30 chr6 4499798 4499869 -184779685 + L1MB3 LINE L1 6100 6169 -2 265 367 101 0 chr6 4501443 4501552 -184778002 + L2 LINE L2 3152 3271 -1 306 0 0 0 chr6 4502070 4502104 -184777450 + (CA)n Simple_repeat Simple_repeat 2 35 0 647 56 0 0 chr6 4502223 4502313 -184777241 + Alu SINE Alu 221 310 0 678 244 130 28 chr6 4503829 4504153 -184775401 + LTR33A LTR ERVL 159 515 -8 525 178 0 0 chr6 4504410 4504500 -184775054 - LTR12 LTR ERV1 0 714 625 306 185 29 27 chr6 4504500 4504602 -184774952 - LTR30 LTR ERV1 -92 614 378 273 145 0 65 chr6 4504602 4504664 -184774890 - LTR12 LTR ERV1 -429 285 228 970 162 96 21 chr6 4504721 4504944 -184774610 - LTR12 LTR ERV1 -480 1683 55 274 231 0 0 chr6 4504944 4504996 -184774558 - LTR30 LTR ERV1 -670 52 1 2226 106 0 0 chr6 4505563 4505864 -184773690 - AluSq SINE Alu -12 301 1 347 141 31 0 chr6 4506164 4506228 -184773326 + Alu SINE Alu 235 300 -2 2503 154 55 20 chr6 4506355 4506795 -184772759 - MLT1C LTR MaLR 0 467 13 1677 208 28 48 chr6 4506813 4507207 -184772347 - MLT1C-int LTR MaLR -14 1357 972 2321 108 95 63 chr6 4507732 4508195 -184771359 + L1MA7 LINE L1 5813 6290 -1 1485 159 116 0 chr6 4508205 4508463 -184771091 + AluJb SINE Alu 1 288 -24 344 327 68 19 chr6 4508682 4508844 -184770710 + MER5A DNA MER1_type 20 189 0 495 291 60 39 chr6 4508849 4509031 -184770523 + MIR SINE MIR 18 203 -59 317 299 37 9 chr6 4509158 4509265 -184770289 + MIR SINE MIR 153 262 0 2128 97 10 3 chr6 4509637 4509935 -184769619 + AluSc SINE Alu 1 300 -9 1968 184 91 30 chr6 4510485 4510947 -184768607 - LTR2B LTR ERV1 0 490 1 264 407 42 0 chr6 4510999 4511117 -184768437 - L2 LINE L2 -27 3245 3123 299 231 51 0 chr6 4511168 4511246 -184768308 + MER58B DNA MER1_type 252 333 -8 756 157 100 7 chr6 4511481 4511621 -184767933 - LTR32 LTR ERVL 0 471 319 1972 181 29 14 chr6 4511623 4511972 -184767582 - LTR32 LTR ERVL -103 368 15 1580 190 74 3 chr6 4511972 4512336 -184767218 + L1MB2 LINE L1 5782 6171 0 873 330 14 17 chr6 4512665 4513011 -184766543 + L2 LINE L2 1973 2317 -997 937 283 118 53 chr6 4513028 4513477 -184766077 - MLT1J LTR MaLR -33 478 1 455 333 85 28 chr6 4513477 4513795 -184765759 + L2 LINE L2 2315 2650 -664 398 287 102 56 chr6 4513801 4514058 -184765496 + L2 LINE L2 2473 2717 -555 1922 142 3 0 chr6 4514058 4514361 -184765193 + AluSx SINE Alu 1 304 -8 398 287 102 56 chr6 4514361 4514655 -184764899 + L2 LINE L2 2717 3091 -181 230 250 52 73 chr6 4514802 4514898 -184764656 + L2 LINE L2 3220 3313 0 713 138 7 51 chr6 4516382 4516520 -184763034 - FRAM SINE Alu -4 172 41 548 285 108 25 chr6 4516830 4517107 -184762447 + L1MC4a LINE L1 5569 5868 -1940 875 123 23 0 chr6 4517126 4517256 -184762298 - FLAM_C SINE Alu 0 133 1 1219 202 96 58 chr6 4517335 4518024 -184761530 - L1ME1 LINE L1 -9 6157 5496 2148 123 0 0 chr6 4518024 4518333 -184761221 - AluSg SINE Alu -1 309 1 2034 121 0 25 chr6 4518333 4518648 -184760906 - AluSx SINE Alu -4 308 2 1219 202 96 58 chr6 4518648 4518727 -184760827 - L1ME1 LINE L1 -670 5496 5421 1742 176 0 0 chr6 4518727 4519028 -184760526 - AluSx SINE Alu -11 301 1 1219 202 96 58 chr6 4519028 4519356 -184760198 - L1ME1 LINE L1 -745 5421 4853 844 171 41 59 chr6 4519744 4519864 -184759690 - AluJo SINE Alu -12 300 182 4971 71 3 2 chr6 4519864 4520496 -184759058 - LTR10E LTR ERV1 0 633 1 844 171 41 59 chr6 4520496 4520545 -184759009 - AluJo SINE Alu -130 182 134 852 150 0 0 chr6 4520545 4520678 -184758876 - AluJo SINE Alu -169 133 1 861 246 42 17 chr6 4521473 4521709 -184757845 - MIR SINE MIR -3 259 18 2148 107 0 57 chr6 4521811 4522128 -184757426 - AluSx SINE Alu -13 299 1 265 376 6 25 chr6 4522365 4522527 -184757027 + MIR SINE MIR 75 233 -29 400 263 105 70 chr6 4522618 4522935 -184756619 + L1MC4a LINE L1 4755 5095 -1051 1941 102 45 0 chr6 4522935 4523225 -184756329 + AluSx SINE Alu 7 308 0 400 263 105 70 chr6 4523225 4523362 -184756192 + L1MC4a LINE L1 5095 5226 -920 374 242 89 8 chr6 4523408 4523532 -184756022 - L2 LINE L2 0 3313 3180 1878 132 11 0 chr6 4523716 4523981 -184755573 + AluSx SINE Alu 7 274 -38 21 0 0 0 chr6 4523988 4524009 -184755545 + AT_rich Low_complexity Low_complexity 1 21 0 1496 183 11 21 chr6 4524080 4524364 -184755190 + AluJo SINE Alu 1 281 -31 2603 74 0 0 chr6 4524376 4524687 -184754867 - AluY SINE Alu 0 311 1 936 304 41 39 chr6 4524707 4525147 -184754407 + L1MC4a LINE L1 5466 5906 -1902 503 216 122 0 chr6 4525147 4525295 -184754259 + MER63C DNA MER1_type 1 166 -764 482 224 46 33 chr6 4525396 4525548 -184754006 - MER63C DNA MER1_type -533 397 244 * 1448 188 20 14 chr6 4525432 4525708 -184753846 + MER63C DNA MER1_type 244 521 -409 1068 213 62 0 chr6 4525708 4525919 -184753635 + MER58A DNA MER1_type 1 224 0 1633 230 65 0 chr6 4525919 4526301 -184753253 + MER63C DNA MER1_type 519 925 -5 271 285 98 16 chr6 4527150 4527273 -184752281 - LTR16C LTR ERVL 0 491 359 1060 212 205 40 chr6 4527292 4527716 -184751838 - MLT1G LTR MaLR 0 590 97 1193 178 57 13 chr6 4527808 4528038 -184751516 - MLT1F1 LTR MaLR -299 268 29 204 40 0 0 chr6 4528055 4528080 -184751474 + (TG)n Simple_repeat Simple_repeat 2 26 0 1100 264 190 26 chr6 4528100 4528197 -184751357 - L1ME3A LINE L1 -232 5938 5858 2516 123 21 3 chr6 4528197 4528580 -184750974 - MLT1B LTR MaLR 0 390 1 1100 264 190 26 chr6 4528580 4529064 -184750490 - L1ME3A LINE L1 -312 5858 5265 2247 124 0 0 chr6 4529303 4529602 -184749952 + AluSx SINE Alu 1 299 -13 975 161 37 0 chr6 4530669 4530831 -184748723 - MER20 DNA MER1_type 0 219 52 2538 162 5 0 chr6 4530887 4531288 -184748266 - MER57A LTR ERV1 0 403 1 15608 124 30 3 chr6 4531343 4533693 -184745861 - Tigger1 DNA MER2_type 0 2418 5 347 200 122 0 chr6 4533748 4533838 -184745716 + U13 snRNA snRNA 1 101 -3 1766 88 0 0 chr6 4534428 4534644 -184744910 + AluSg/x SINE Alu 87 302 -8 205 285 49 57 chr6 4535918 4536041 -184743513 + MER5B DNA MER1_type 2 123 -55 180 212 0 0 chr6 4536396 4536429 -184743125 + L2 LINE L2 3230 3262 -10 2406 95 0 0 chr6 4536448 4536744 -184742810 - AluSg SINE Alu -14 296 1 1990 118 0 24 chr6 4536982 4537270 -184742284 + AluSx SINE Alu 22 302 -10 252 232 85 67 chr6 4538391 4538555 -184740999 - L1ME4a LINE L1 -2 6119 5953 524 229 97 0 chr6 4538833 4539008 -184740546 - MIR SINE MIR 0 262 71 538 281 113 30 chr6 4539621 4540027 -184739527 - HAL1 LINE L1 0 2507 2068 * 6821 223 69 24 chr6 4540022 4542650 -184736904 + L1ME1 LINE L1 3153 5901 -265 1693 154 78 7 chr6 4542659 4542965 -184736589 + MER2 DNA MER2_type 17 344 -1 713 247 5 73 chr6 4542969 4543170 -184736384 + L1ME1 LINE L1 5905 6091 -75 941 220 18 23 chr6 4543170 4543388 -184736166 - MER20 DNA MER1_type -1 218 2 713 247 5 73 chr6 4543388 4543405 -184736149 + L1ME1 LINE L1 6091 6108 -58 596 177 21 0 chr6 4543409 4543505 -184736049 + AluJ/FLAM SINE Alu 3 100 -212 39 50 0 0 chr6 4543505 4543565 -184735989 + AT_rich Low_complexity Low_complexity 1 60 0 1712 158 21 7 chr6 4543565 4543849 -184735705 - AluJb SINE Alu -24 288 1 2148 124 3 7 chr6 4543886 4544185 -184735369 + AluSx SINE Alu 1 298 -14 684 293 226 44 chr6 4544383 4545315 -184734239 - HAL1 LINE L1 -931 1576 475 204 125 42 42 chr6 4546501 4546573 -184732981 + (TAA)n Simple_repeat Simple_repeat 1 72 0 1894 261 92 53 chr6 4546623 4546845 -184732709 + L1M4 LINE L1 2210 2422 -3724 2085 121 14 3 chr6 4546845 4547134 -184732420 + AluSx SINE Alu 1 292 -20 1894 261 92 53 chr6 4547134 4548291 -184731263 + L1M4 LINE L1 2422 3643 -2503 1027 236 159 26 chr6 4548313 4549042 -184730512 - L2 LINE L2 -73 3240 2410 234 215 15 15 chr6 4549061 4549126 -184730428 + GA-rich Low_complexity Low_complexity 2 66 0 4295 27 0 0 chr6 4549338 4549827 -184729727 - L1PA4 LINE L1 -4 6151 5663 838 108 58 0 chr6 4549833 4549953 -184729601 - FLAM_C SINE Alu -10 133 7 361 268 49 0 chr6 4550042 4550165 -184729389 - MIR3 SINE MIR -69 139 11 1317 153 77 32 chr6 4551787 4552035 -184727519 + AluJo SINE Alu 39 297 -15 1576 134 0 17 chr6 4552095 4552326 -184727228 + AluJb SINE Alu 17 243 -69 270 81 0 0 chr6 4552337 4552374 -184727180 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1005 163 0 0 chr6 4553854 4554007 -184725547 + FRAM SINE Alu 1 153 -13 671 221 21 106 chr6 4554182 4554513 -184725041 + MLT1J1 LTR MaLR 35 337 -109 294 293 125 66 chr6 4555992 4556416 -184723138 - MLT1K LTR MaLR 0 588 140 2051 141 0 51 chr6 4556979 4557334 -184722220 + MER1B DNA MER1_type 1 337 0 2074 149 74 3 chr6 4557403 4557766 -184721788 + MLT1B LTR MaLR 1 389 -1 209 304 67 38 chr6 4559195 4559307 -184720247 + MIR SINE MIR 7 122 -86 473 232 134 73 chr6 4559357 4559472 -184720082 + MIR SINE MIR 2 109 -153 2422 69 3 7 chr6 4559472 4559778 -184719776 - AluY SINE Alu -6 305 1 473 232 134 73 chr6 4559778 4559908 -184719646 + MIR SINE MIR 109 262 0 260 320 8 25 chr6 4559982 4560104 -184719450 - MLT1K LTR MaLR 0 588 469 198 171 0 0 chr6 4560419 4560460 -184719094 + (CA)n Simple_repeat Simple_repeat 2 42 0 259 225 45 0 chr6 4561051 4561140 -184718414 + MIR SINE MIR 93 185 -77 2025 127 13 30 chr6 4561198 4561497 -184718057 + AluSx SINE Alu 1 294 -18 643 205 66 0 chr6 4561685 4561851 -184717703 - MIR SINE MIR -57 205 29 274 267 12 12 chr6 4563205 4563291 -184716263 + GA-rich Low_complexity Low_complexity 2 87 0 490 286 105 33 chr6 4563761 4564037 -184715517 - LTR16B LTR ERVL 0 464 169 320 266 115 9 chr6 4564837 4564950 -184714604 + MER96 DNA MER1_type? 1 125 -50 206 205 0 0 chr6 4565916 4565955 -184713599 + G-rich Low_complexity Low_complexity 1 39 0 476 263 21 21 chr6 4566014 4566200 -184713354 - MER5A DNA MER1_type -3 186 1 469 299 91 15 chr6 4566431 4566628 -184712926 + MIR SINE MIR 48 259 -3 704 258 154 75 chr6 4566653 4566724 -184712830 - MLT1F1 LTR MaLR 0 590 526 1720 174 7 17 chr6 4566724 4567022 -184712532 + AluJo SINE Alu 6 300 -12 704 258 154 75 chr6 4567022 4567497 -184712057 - MLT1F1 LTR MaLR -64 526 1 1106 138 39 86 chr6 4568114 4568346 -184711208 - AluJo SINE Alu -7 305 85 1826 155 32 45 chr6 4568542 4568922 -184710632 + THE1C LTR MaLR 1 375 0 1028 203 33 5 chr6 4569336 4569548 -184710006 + MER20 DNA MER1_type 1 218 -1 2200 101 0 3 chr6 4570217 4570503 -184709051 - AluSx SINE Alu -27 285 1 453 228 82 78 chr6 4570726 4570932 -184708622 - L1MC5 LINE L1 -74 7887 7681 2199 120 0 0 chr6 4570933 4571232 -184708322 + AluSx SINE Alu 1 299 -13 290 339 51 8 chr6 4572266 4572384 -184707170 + MIR SINE MIR 79 201 -61 * 444 311 179 16 chr6 4572382 4572745 -184706809 - L2 LINE L2 0 3313 2892 2202 125 110 15 chr6 4572776 4573167 -184706387 + MSTA LTR MaLR 1 428 0 1200 319 76 17 chr6 4573263 4573905 -184705649 - L2 LINE L2 -616 2698 2019 675 142 0 0 chr6 4573905 4574025 -184705529 + (GAATG)n Simple_repeat Simple_repeat 3 122 0 424 306 188 3 chr6 4574030 4574366 -184705188 - L2 LINE L2 -1304 2010 1613 301 242 57 16 chr6 4574983 4575107 -184704447 - HAL1b LINE L1 -7 1341 1213 382 164 0 0 chr6 4575504 4575559 -184703995 + AluJ/FLAM SINE Alu 19 73 -229 820 29 29 0 chr6 4575559 4575663 -184703891 - L1PA7 LINE L1 -100 6054 5948 1622 243 102 67 chr6 4575670 4575699 -184703855 + HAL1 LINE L1 114 141 -2366 2195 122 3 0 chr6 4575699 4575993 -184703561 - AluSx SINE Alu -17 295 1 1622 243 102 67 chr6 4575993 4576528 -184703026 + HAL1 LINE L1 141 656 -1851 1590 201 7 13 chr6 4576528 4576827 -184702727 + AluJo SINE Alu 1 297 -15 2241 99 0 43 chr6 4576829 4577153 -184702401 + AluSg SINE Alu 1 310 0 1622 243 102 67 chr6 4577153 4577320 -184702234 + HAL1 LINE L1 656 875 -1632 384 231 93 9 chr6 4577320 4577428 -184702126 + HsTC2 DNA Tc2 1 117 -1781 260 159 45 0 chr6 4577446 4577490 -184702064 + HsTC2 DNA Tc2 1245 1290 -608 1300 239 267 33 chr6 4577515 4578813 -184700741 + HAL1 LINE L1 874 2507 0 383 168 8 143 chr6 4578890 4579009 -184700545 - MER2 DNA MER2_type -1 344 242 1649 128 42 19 chr6 4579011 4579276 -184700278 + AluSx SINE Alu 35 305 -7 291 122 0 0 chr6 4579494 4579535 -184700019 - MSTA LTR MaLR 0 428 388 2296 104 3 0 chr6 4579535 4579834 -184699720 + AluSx SINE Alu 1 300 -12 27 29 0 0 chr6 4580005 4580039 -184699515 + AT_rich Low_complexity Low_complexity 1 34 0 236 299 0 0 chr6 4580973 4581040 -184698514 + (CTTA)n Simple_repeat Simple_repeat 3 69 0 21 0 0 0 chr6 4581352 4581373 -184698181 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 4583727 4583761 -184695793 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr6 4584843 4584874 -184694680 + AT_rich Low_complexity Low_complexity 1 31 0 227 79 26 0 chr6 4584877 4584915 -184694639 + (TA)n Simple_repeat Simple_repeat 2 40 0 198 0 0 0 chr6 4585950 4585972 -184693582 + (A)n Simple_repeat Simple_repeat 1 22 0 2035 139 0 16 chr6 4585992 4586302 -184693252 - AluSx SINE Alu -7 305 1 1844 114 158 24 chr6 4586303 4586644 -184692910 - MSTA LTR MaLR -40 388 2 218 324 88 0 chr6 4586736 4586906 -184692648 + L2 LINE L2 1859 2043 -1271 1979 182 14 0 chr6 4587096 4587453 -184692101 - L1PB4 LINE L1 -1 6155 5794 284 271 42 42 chr6 4587654 4587798 -184691756 + L2 LINE L2 3084 3227 -86 418 297 156 52 chr6 4587884 4588355 -184691199 + HAL1 LINE L1 882 1303 -1204 2236 117 0 0 chr6 4588355 4588653 -184690901 + AluSg SINE Alu 1 298 -12 418 297 156 52 chr6 4588653 4589104 -184690450 + HAL1 LINE L1 1303 1900 -607 479 181 85 11 chr6 4589192 4589286 -184690268 + AluJo SINE Alu 117 217 -95 243 338 68 7 chr6 4589533 4589681 -184689873 + HAL1b LINE L1 749 905 -443 315 324 34 34 chr6 4589778 4589954 -184689600 + HAL1 LINE L1 2226 2401 -106 1933 120 40 36 chr6 4589993 4590159 -184689395 - AluSx SINE Alu -10 302 133 2502 82 0 0 chr6 4590159 4590463 -184689091 - AluY SINE Alu -7 304 1 1933 120 40 36 chr6 4590463 4590597 -184688957 - AluSx SINE Alu -179 133 1 194 318 14 74 chr6 4591091 4591239 -184688315 - MIR SINE MIR -72 190 52 1472 131 25 4 chr6 4591313 4591557 -184687997 + L1MA9 LINE L1 5357 5605 -707 2241 92 3 55 chr6 4591561 4591887 -184687667 + AluSp SINE Alu 1 309 -4 2452 97 0 0 chr6 4591890 4592200 -184687354 + AluSg SINE Alu 1 310 0 1394 118 15 0 chr6 4592204 4592408 -184687146 + L1MA9 LINE L1 5953 6159 -153 * 1597 258 87 68 chr6 4592406 4592701 -184686853 + L1ME3A LINE L1 3586 3874 -2272 2478 77 0 0 chr6 4592701 4592998 -184686556 - AluY SINE Alu -14 297 1 1597 258 87 68 chr6 4592998 4593372 -184686182 + L1ME3A LINE L1 3874 4240 -1906 2542 111 22 8 chr6 4593372 4593742 -184685812 - THE1C LTR MaLR 0 375 1 1597 258 87 68 chr6 4593742 4594077 -184685477 + L1ME3A LINE L1 4240 4621 -1525 2382 100 0 13 chr6 4594077 4594387 -184685167 - AluSq SINE Alu -7 306 1 1597 258 87 68 chr6 4594387 4594620 -184684934 + L1ME3A LINE L1 4621 4848 -1298 508 288 141 13 chr6 4594644 4595236 -184684318 + L1ME3A LINE L1 4928 5579 -591 242 320 30 0 chr6 4595739 4595839 -184683715 + LTR67 LTR ERVL 431 533 -24 906 253 50 44 chr6 4595853 4595937 -184683617 + L1ME3A LINE L1 5581 5663 -507 4904 26 7 0 chr6 4595937 4596504 -184683050 + L1PA4 LINE L1 5585 6155 0 906 253 50 44 chr6 4596504 4596779 -184682775 + L1ME3A LINE L1 5663 5944 -226 365 132 0 13 chr6 4596798 4596874 -184682680 + (TA)n Simple_repeat Simple_repeat 1 75 0 492 257 93 93 chr6 4597178 4597586 -184681968 + L1MC4a LINE L1 5617 6024 -1784 302 188 0 0 chr6 4597590 4597638 -184681916 + MER66B LTR ERV1 298 345 -141 282 281 20 69 chr6 4597685 4597888 -184681666 + L1MC4a LINE L1 6054 6246 -1562 342 0 0 0 chr6 4600114 4600152 -184679402 + (CA)n Simple_repeat Simple_repeat 1 38 0 2118 107 4 0 chr6 4600154 4600424 -184679130 - AluSx SINE Alu -36 276 6 1512 132 107 80 chr6 4600677 4601004 -184678550 - THE1C LTR MaLR 0 375 36 2233 118 0 0 chr6 4601004 4601308 -184678246 + AluSx SINE Alu 1 304 -8 1512 132 107 80 chr6 4601308 4601345 -184678209 - THE1C LTR MaLR -339 36 1 282 366 31 9 chr6 4601509 4601736 -184677818 + L2 LINE L2 2170 2401 -913 1989 112 34 14 chr6 4602627 4602921 -184676633 + AluSx SINE Alu 1 300 -12 302 287 65 0 chr6 4603286 4603394 -184676160 - MIR SINE MIR -108 154 40 2182 88 17 10 chr6 4603394 4603688 -184675866 - AluSc SINE Alu -13 296 1 401 166 12 19 chr6 4603830 4603943 -184675611 - L1M3 LINE L1 -662 5509 5402 372 262 157 34 chr6 4603911 4604262 -184675292 - L1M4 LINE L1 -3090 3056 2663 * 297 0 0 0 chr6 4604262 4604295 -184675259 + (CA)n Simple_repeat Simple_repeat 2 34 0 1723 150 67 0 chr6 4604309 4604576 -184674978 - AluSx SINE Alu -27 285 1 1925 126 48 4 chr6 4604853 4605153 -184674401 + AluSx SINE Alu 1 312 0 2128 126 0 7 chr6 4605318 4605612 -184673942 - AluSg SINE Alu -18 292 1 206 328 76 0 chr6 4605849 4605980 -184673574 + L2 LINE L2 3173 3313 0 2241 122 0 3 chr6 4606055 4606359 -184673195 + AluSq SINE Alu 1 303 -10 470 179 0 9 chr6 4606414 4606520 -184673034 + GA-rich Low_complexity Low_complexity 4 108 0 259 233 222 0 chr6 4606533 4606623 -184672931 + MER5B DNA MER1_type 69 178 0 833 197 77 0 chr6 4606957 4607034 -184672520 + L1MA9 LINE L1 6075 6145 -167 270 0 0 0 chr6 4607034 4607064 -184672490 + (CA)n Simple_repeat Simple_repeat 1 30 0 833 197 77 0 chr6 4607064 4607169 -184672385 + L1MA9 LINE L1 6145 6271 -41 1875 174 7 0 chr6 4607899 4608209 -184671345 + AluJb SINE Alu 1 312 0 1154 176 0 0 chr6 4609025 4609218 -184670336 + AluJb SINE Alu 47 239 -73 2134 146 0 0 chr6 4609703 4610004 -184669550 - AluSx SINE Alu -11 301 1 222 322 46 59 chr6 4610179 4610331 -184669223 - MIR SINE MIR -111 151 2 439 297 104 16 chr6 4610427 4610619 -184668935 + MIR SINE MIR 40 248 -14 2517 37 10 7 chr6 4612083 4612378 -184667176 + AluY SINE Alu 1 296 -15 180 0 0 0 chr6 4612710 4612730 -184666824 + (T)n Simple_repeat Simple_repeat 1 20 0 404 181 0 14 chr6 4613279 4613351 -184666203 + AluJ/FLAM SINE Alu 14 84 -228 1434 180 49 29 chr6 4613544 4613850 -184665704 + AluJo SINE Alu 1 312 0 1703 164 35 0 chr6 4613956 4614242 -184665312 - AluJb SINE Alu -5 307 12 1877 161 27 0 chr6 4614396 4614694 -184664860 - AluSx SINE Alu -6 306 1 363 267 96 84 chr6 4614879 4615029 -184664525 - L1ME4a LINE L1 -222 5899 5752 2041 127 40 3 chr6 4615029 4615329 -184664225 - AluSq SINE Alu -2 311 1 363 267 96 84 chr6 4615329 4615500 -184664054 - L1ME4a LINE L1 -369 5752 5574 380 107 0 0 chr6 4617411 4617467 -184662087 - U6 snRNA snRNA -51 56 1 1869 154 10 3 chr6 4617498 4617797 -184661757 - AluSx SINE Alu -11 301 1 2106 111 27 13 chr6 4617971 4618269 -184661285 - AluSg SINE Alu -8 302 1 673 207 326 4 chr6 4618300 4618527 -184661027 + AluJo SINE Alu 1 300 -2 258 192 39 192 chr6 4618637 4618712 -184660842 - MER81 DNA DNA -4 110 62 1996 155 0 3 chr6 4618712 4619009 -184660545 + AluSx SINE Alu 2 297 -15 258 192 39 192 chr6 4619009 4619063 -184660491 - MER81 DNA DNA -52 62 1 1119 205 114 28 chr6 4619161 4619478 -184660076 - MER2 DNA MER2_type 0 344 1 584 233 93 16 chr6 4619495 4619688 -184659866 - LTR33 LTR ERVL -3 518 311 376 272 95 25 chr6 4619715 4619873 -184659681 - LTR33 LTR ERVL -343 178 10 1736 156 7 41 chr6 4620172 4620467 -184659087 - AluSx SINE Alu -27 285 1 4849 129 37 53 chr6 4620588 4621988 -184657566 - pTR5 LTR ERV1 0 2438 740 1442 153 69 42 chr6 4622247 4622372 -184657182 + AluJo SINE Alu 1 121 -191 2257 95 14 0 chr6 4622372 4622668 -184656886 + AluSg SINE Alu 1 300 -10 832 161 37 31 chr6 4622668 4622830 -184656724 + AluJo/FRAM SINE Alu 134 296 -16 209 266 92 9 chr6 4622955 4623064 -184656490 + MIR SINE MIR 80 197 -65 1998 151 0 0 chr6 4625752 4626043 -184653511 + AluJb SINE Alu 1 291 -21 2444 84 10 0 chr6 4626511 4626820 -184652734 + AluSq SINE Alu 1 312 -1 446 305 25 30 chr6 4627212 4627409 -184652145 - L3 LINE CR1 -520 1057 862 2121 102 0 75 chr6 4627631 4627953 -184651601 + AluSx SINE Alu 1 298 -14 1808 182 0 0 chr6 4628169 4628455 -184651099 + AluJo SINE Alu 1 286 -26 23 0 0 0 chr6 4628455 4628478 -184651076 + AT_rich Low_complexity Low_complexity 1 23 0 1556 173 3 40 chr6 4628490 4628790 -184650764 + AluJo SINE Alu 3 291 -21 2132 114 43 3 chr6 4629957 4630256 -184649298 - AluSx SINE Alu -1 311 1 207 297 0 14 chr6 4630765 4630839 -184648715 + G-rich Low_complexity Low_complexity 2 74 0 705 160 75 64 chr6 4631054 4631121 -184648433 - Charlie4a DNA MER1_type -1465 496 431 2388 82 3 13 chr6 4631121 4631426 -184648128 + AluSp SINE Alu 1 302 -11 705 160 75 64 chr6 4631426 4631545 -184648009 - Charlie4a DNA MER1_type -1530 431 308 1620 199 62 71 chr6 4631548 4631598 -184647956 - L1MA10 LINE L1 -7 6327 6278 2084 125 0 7 chr6 4631598 4631894 -184647660 + AluSq SINE Alu 1 294 -19 1620 199 62 71 chr6 4631894 4632310 -184647244 - L1MA10 LINE L1 -56 6278 5865 1124 189 84 0 chr6 4632310 4632548 -184647006 - Charlie4a DNA MER1_type -192 316 59 1907 83 117 0 chr6 4633487 4633753 -184645801 + AluSx SINE Alu 1 297 -15 1467 94 0 0 chr6 4633755 4633936 -184645618 - AluSc SINE Alu -123 186 6 437 309 96 18 chr6 4633940 4634222 -184645332 + L1MC4a LINE L1 5080 5383 -763 1750 144 0 11 chr6 4634238 4634501 -184645053 + AluSx SINE Alu 29 288 -24 816 311 80 26 chr6 4634524 4634977 -184644577 + L1MC4a LINE L1 5374 5850 -1958 2354 84 3 0 chr6 4634996 4635342 -184644212 + AluSp SINE Alu 1 347 0 2231 110 0 28 chr6 4635352 4635670 -184643884 + AluSq SINE Alu 1 309 -4 2312 89 7 3 chr6 4635788 4636091 -184643463 + AluSp SINE Alu 1 304 -9 1155 162 19 14 chr6 4636417 4636633 -184642921 + MER20 DNA MER1_type 1 217 -2 2310 108 0 0 chr6 4636906 4637203 -184642351 - AluSx SINE Alu -15 297 1 1296 274 84 32 chr6 4637452 4637926 -184641628 - MLT1J LTR MaLR -2 509 11 1707 153 38 51 chr6 4638195 4638509 -184641045 + AluJb SINE Alu 1 310 -2 1830 154 3 10 chr6 4640331 4640623 -184638931 + AluJo SINE Alu 4 293 -19 891 210 113 21 chr6 4640705 4640943 -184638611 - MIR SINE MIR -2 260 1 1796 141 17 23 chr6 4641077 4641376 -184638178 - AluJo SINE Alu -15 297 1 1032 79 14 36 chr6 4641571 4641710 -184637844 + AluSq/x SINE Alu 1 136 -177 233 283 98 39 chr6 4641879 4642084 -184637470 - L2 LINE L2 -213 3059 2843 2217 101 10 0 chr6 4642200 4642496 -184637058 + AluSg SINE Alu 1 299 -11 184 266 83 37 chr6 4642831 4642940 -184636614 - L2 LINE L2 -1034 2280 2167 2236 114 0 0 chr6 4643143 4643440 -184636114 + AluSg SINE Alu 1 297 -13 401 348 51 62 chr6 4643897 4644153 -184635401 + L2 LINE L2 3020 3272 0 409 202 146 0 chr6 4644371 4644460 -184635094 + FLAM_C SINE Alu 2 103 -40 228 35 0 0 chr6 4644773 4644802 -184634752 + (CA)n Simple_repeat Simple_repeat 2 30 0 224 225 75 38 chr6 4645036 4645116 -184634438 - MIR3 SINE MIR -10 198 116 180 176 0 0 chr6 4645339 4645373 -184634181 + L2 LINE L2 3201 3234 -38 1019 69 30 13 chr6 4645398 4645635 -184633919 + (TGGA)n Simple_repeat Simple_repeat 1 241 0 367 232 84 0 chr6 4645923 4646018 -184633536 + MER94 DNA DNA 1 103 -31 825 177 0 0 chr6 4646174 4646298 -184633256 + FLAM_C SINE Alu 2 125 -18 26 0 0 0 chr6 4646301 4646327 -184633227 + AT_rich Low_complexity Low_complexity 1 26 0 814 158 0 0 chr6 4646594 4646721 -184632833 - AluJb SINE Alu -185 127 1 316 355 21 35 chr6 4646849 4646990 -184632564 + MIR3 SINE MIR 32 170 -38 357 24 0 0 chr6 4647860 4647902 -184631652 + (CA)n Simple_repeat Simple_repeat 2 43 0 28 29 0 0 chr6 4648580 4648615 -184630939 + AT_rich Low_complexity Low_complexity 1 35 0 299 301 60 15 chr6 4648637 4648770 -184630784 + MIR SINE MIR 54 192 -70 2217 118 0 0 chr6 4649105 4649409 -184630145 + AluSx SINE Alu 1 304 -8 251 135 0 0 chr6 4649409 4649446 -184630108 - MSTA LTR MaLR -391 37 1 281 337 143 14 chr6 4649466 4649837 -184629717 + L2 LINE L2 1983 2401 -913 1972 112 34 14 chr6 4650728 4651022 -184628532 + AluSx SINE Alu 1 300 -12 346 323 77 7 chr6 4651340 4651495 -184628059 - MIR SINE MIR -57 205 40 2162 88 17 10 chr6 4651495 4651789 -184627765 - AluSc SINE Alu -13 296 1 407 166 12 19 chr6 4651931 4652044 -184627510 - L1M3 LINE L1 -662 5509 5402 248 249 100 39 chr6 4652012 4652310 -184627244 - L1M3 LINE L1 -3090 3056 2719 * 36 0 0 21 chr6 4652458 4652490 -184627064 + AT_rich Low_complexity Low_complexity 1 33 -13 2226 95 3 0 chr6 4652490 4652775 -184626779 - AluSx SINE Alu -26 286 1 36 0 0 21 chr6 4652775 4652789 -184626765 + AT_rich Low_complexity Low_complexity 33 46 0 729 195 0 0 chr6 4652789 4652907 -184626647 + FRAM SINE Alu 1 113 -63 2657 51 0 10 chr6 4653114 4653428 -184626126 - AluY SINE Alu 0 311 1 621 245 155 0 chr6 4653527 4653682 -184625872 + MER5A DNA MER1_type 11 189 0 189 0 0 0 chr6 4655110 4655131 -184624423 + (TG)n Simple_repeat Simple_repeat 2 22 0 426 94 0 0 chr6 4655133 4655197 -184624357 + (TAGG)n Simple_repeat Simple_repeat 4 67 0 1633 178 25 0 chr6 4655198 4655484 -184624070 - AluJb SINE Alu -19 293 1 906 119 0 30 chr6 4656290 4656424 -184623130 + FRAM SINE Alu 29 158 -18 180 0 0 0 chr6 4657298 4657318 -184622236 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2222 100 0 34 chr6 4657323 4657644 -184621910 - AluSq SINE Alu -3 310 1 299 301 60 15 chr6 4657979 4658112 -184621442 - MIR SINE MIR -70 192 54 28 29 0 0 chr6 4658134 4658169 -184621385 + AT_rich Low_complexity Low_complexity 1 35 0 357 24 0 0 chr6 4658847 4658889 -184620665 + (TG)n Simple_repeat Simple_repeat 2 43 0 316 355 21 35 chr6 4659759 4659900 -184619654 - MIR3 SINE MIR -38 170 32 814 158 0 0 chr6 4660028 4660155 -184619399 + AluJb SINE Alu 1 127 -185 2029 136 3 3 chr6 4660331 4660617 -184618937 + AluSx SINE Alu 1 286 -26 186 71 0 0 chr6 4660617 4660645 -184618909 + (TA)n Simple_repeat Simple_repeat 2 29 0 1993 121 7 10 chr6 4660653 4660943 -184618611 + AluSx SINE Alu 1 289 -23 28 61 0 0 chr6 4661115 4661164 -184618390 + AT_rich Low_complexity Low_complexity 1 49 0 2513 64 0 6 chr6 4661231 4661542 -184618012 - AluY SINE Alu -2 309 1 292 292 36 18 chr6 4661626 4661794 -184617760 - L1ME4a LINE L1 -226 5895 5725 2424 82 10 0 chr6 4661877 4662249 -184617305 + AluSq SINE Alu 5 379 0 2239 103 0 0 chr6 4663623 4663915 -184615639 - AluSg SINE Alu -18 292 1 243 254 111 0 chr6 4664042 4664105 -184615449 + MIR SINE MIR 123 192 -70 2235 284 120 40 chr6 4664524 4665934 -184613620 + L1MEd LINE L1 543 1838 -4291 2109 136 0 13 chr6 4665934 4666236 -184613318 + AluSx SINE Alu 1 298 -14 2235 284 120 40 chr6 4666236 4666552 -184613002 + L1MEd LINE L1 1838 2127 -4002 2264 123 0 0 chr6 4666552 4666861 -184612693 - AluSg SINE Alu -1 309 1 2235 284 120 40 chr6 4666861 4667314 -184612240 + L1MEd LINE L1 2127 2542 -3587 2053 131 7 7 chr6 4667314 4667619 -184611935 + AluSx SINE Alu 1 305 -7 2235 284 120 40 chr6 4667619 4667828 -184611726 + L1MEd LINE L1 2542 2733 -3396 2179 131 0 0 chr6 4667828 4668134 -184611420 - AluSx SINE Alu -3 309 4 2235 284 120 40 chr6 4668134 4668473 -184611081 + L1MEd LINE L1 2733 3043 -3086 2319 106 0 3 chr6 4668473 4668784 -184610770 - AluSq SINE Alu -3 310 1 2235 284 120 40 chr6 4668784 4668996 -184610558 + L1MEd LINE L1 3043 3237 -2892 1701 164 20 16 chr6 4668996 4669301 -184610253 + AluJb SINE Alu 1 306 -6 2235 284 120 40 chr6 4669301 4669538 -184610016 + L1MEd LINE L1 3237 3938 -2191 2042 122 0 0 chr6 4669566 4669844 -184609710 + AluSg SINE Alu 1 278 -32 267 140 0 0 chr6 4669846 4669896 -184609658 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 369 258 157 13 chr6 4669896 4670055 -184609499 + L1MEd LINE L1 3947 4128 -2001 188 346 99 16 chr6 4670303 4670485 -184609069 + L2 LINE L2 2825 3021 -251 4236 143 110 99 chr6 4670523 4670928 -184608626 + L1MC3 LINE L1 6133 5748 -585 231 276 46 0 chr6 4670928 4671015 -184608539 + MLT1F1 LTR MaLR 35 125 -442 4236 143 110 99 chr6 4671015 4671609 -184607945 + L1MC3 LINE L1 5747 6333 0 2307 70 17 7 chr6 4672065 4672239 -184607315 - AluY SINE Alu -7 304 124 405 0 0 0 chr6 4672239 4672284 -184607270 + (TG)n Simple_repeat Simple_repeat 2 46 0 2307 70 17 7 chr6 4672284 4672410 -184607144 - AluY SINE Alu -187 124 1 342 313 157 0 chr6 4672436 4672551 -184607003 + L2 LINE L2 3134 3266 -6 323 197 0 0 chr6 4672734 4672795 -184606759 + MIR SINE MIR 181 241 -21 21 0 0 0 chr6 4672806 4672827 -184606727 + AT_rich Low_complexity Low_complexity 1 21 0 316 163 75 25 chr6 4673148 4673228 -184606326 + MER112 DNA MER1_type 1 84 -176 412 186 0 93 chr6 4673347 4673388 -184606166 - MER5A DNA MER1_type -81 108 65 2092 117 0 23 chr6 4673388 4673687 -184605867 - AluSx SINE Alu -20 292 1 412 186 0 93 chr6 4673687 4673763 -184605791 - MER5A DNA MER1_type -124 65 2 189 74 0 0 chr6 4673979 4674006 -184605548 + (TC)n Simple_repeat Simple_repeat 2 28 0 29 110 0 0 chr6 4677891 4678018 -184601536 + GC_rich Low_complexity Low_complexity 1 127 0 272 229 9 46 chr6 4678417 4678526 -184601028 + C-rich Low_complexity Low_complexity 3 107 0 188 33 0 33 chr6 4678553 4678583 -184600971 + (CCCCG)n Simple_repeat Simple_repeat 5 33 0 209 143 20 20 chr6 4678731 4678780 -184600774 + (CCCCG)n Simple_repeat Simple_repeat 3 51 0 22 0 0 0 chr6 4678872 4678894 -184600660 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr6 4678993 4679021 -184600533 + GC_rich Low_complexity Low_complexity 1 28 0 271 124 41 52 chr6 4679107 4679204 -184600350 + (CCCG)n Simple_repeat Simple_repeat 4 99 0 190 292 117 25 chr6 4680266 4680386 -184599168 - L2 LINE L2 -1 3312 3182 441 257 189 22 chr6 4681107 4681329 -184598225 + MIR SINE MIR 3 261 -1 189 310 0 52 chr6 4681732 4681790 -184597764 + L2 LINE L2 3203 3257 -15 1109 225 64 35 chr6 4682028 4682339 -184597215 - MER58B DNA MER1_type -21 320 1 1495 144 9 115 chr6 4682494 4682842 -184596712 - AluYa5 SINE Alu 0 311 1 467 309 34 73 chr6 4685441 4685691 -184593863 - L1MEc LINE L1 -4641 1669 1438 2110 133 0 7 chr6 4685691 4685992 -184593562 - AluSq SINE Alu -14 299 1 467 309 34 73 chr6 4685992 4686123 -184593431 - L1MEc LINE L1 -4872 1438 1303 490 246 126 62 chr6 4686149 4686458 -184593096 - L1MEc LINE L1 -4883 1236 908 1932 144 73 12 chr6 4686896 4686998 -184592556 + MER7A DNA MER2_type 2 96 -2942 2513 112 20 0 chr6 4686998 4687355 -184592199 + THE1B LTR MaLR 1 364 0 1932 144 73 12 chr6 4687355 4687579 -184591975 + MER7A DNA MER2_type 96 346 0 2258 114 3 0 chr6 4690039 4690345 -184589209 - AluSx SINE Alu -5 307 1 1939 129 34 3 chr6 4690481 4690776 -184588778 + AluSx SINE Alu 1 304 -8 1790 170 7 0 chr6 4691347 4691647 -184587907 - AluJb SINE Alu -10 302 1 375 293 61 45 chr6 4693637 4693835 -184585719 + MARNA DNA Mariner 275 475 -111 2511 55 0 32 chr6 4694157 4694465 -184585089 - AluY SINE Alu -13 298 1 490 250 141 68 chr6 4694518 4694707 -184584847 - L1ME LINE L1 -840 5240 5066 2191 109 3 17 chr6 4694707 4695009 -184584545 - AluSx SINE Alu -14 298 1 490 250 141 68 chr6 4695009 4695512 -184584042 - L1ME LINE L1 -1014 5066 4497 205 262 0 83 chr6 4695512 4695596 -184583958 - L2 LINE L2 -59 3254 3178 2143 244 140 48 chr6 4695713 4696932 -184582622 - L2 LINE L2 -421 2893 1563 554 279 148 41 chr6 4697097 4697638 -184581916 - L1ME LINE L1 -1801 4279 3681 1794 104 100 19 chr6 4698236 4698506 -184581048 - AluSx SINE Alu -20 292 1 22 0 0 0 chr6 4698639 4698661 -184580893 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr6 4699681 4699708 -184579846 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2366 194 55 30 chr6 4699708 4700233 -184579321 - L1MB7 LINE L1 -16 6168 5631 1869 197 0 0 chr6 4700237 4700546 -184579008 - AluJb SINE Alu -3 309 1 2315 264 131 37 chr6 4700876 4701717 -184577837 - L1ME LINE L1 -2406 3674 2913 1609 176 51 14 chr6 4701717 4702012 -184577542 - AluJb SINE Alu -6 306 1 2315 264 131 37 chr6 4702012 4704051 -184575503 - L1ME LINE L1 -3167 2913 278 1795 171 3 7 chr6 4704534 4704826 -184574728 + AluJo SINE Alu 6 296 -16 180 0 0 0 chr6 4706007 4706027 -184573527 + (T)n Simple_repeat Simple_repeat 1 20 0 23 54 0 0 chr6 4706189 4706226 -184573328 + AT_rich Low_complexity Low_complexity 1 37 0 2582 162 24 31 chr6 4707714 4708225 -184571329 - MLT2B1 LTR ERVL -8 512 6 4203 221 91 51 chr6 4708708 4709111 -184570443 - L1MC4a LINE L1 0 7808 7422 1438 218 17 57 chr6 4709111 4709514 -184570040 - MLT1B LTR MaLR 0 390 4 4203 221 91 51 chr6 4709514 4709865 -184569689 - L1MC4a LINE L1 -386 7422 7086 2072 137 0 9 chr6 4709865 4710180 -184569374 - AluJo SINE Alu 0 312 1 4203 221 91 51 chr6 4710180 4710811 -184568743 - L1MC4a LINE L1 -722 7086 6367 565 245 0 2 chr6 4710812 4710997 -184568557 + MER58A DNA MER1_type 6 223 -1 2555 218 53 30 chr6 4711005 4711740 -184567814 - L1MC4a LINE L1 -1434 6374 5623 1480 176 76 53 chr6 4712867 4713224 -184566330 - MLT1A1 LTR MaLR 0 365 1 241 163 23 0 chr6 4713322 4713365 -184566189 + MER69 DNA AcHobo 1 44 -1182 901 168 37 102 chr6 4713879 4714123 -184565431 - AluJo SINE Alu -8 304 77 326 227 31 41 chr6 4714249 4714346 -184565208 + MER5A DNA MER1_type 14 109 -80 342 260 127 48 chr6 4714466 4714786 -184564768 - L1MC4a LINE L1 -494 5627 5538 * 500 264 88 89 chr6 4714783 4715735 -184563819 - L1MC4a LINE L1 -1331 4815 3865 1679 177 16 35 chr6 4716035 4716352 -184563202 - AluJb SINE Alu -1 311 1 1893 152 10 7 chr6 4716793 4717096 -184562458 - AluSx SINE Alu -8 304 1 201 175 0 0 chr6 4717480 4717520 -184562034 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 321 310 147 11 chr6 4717747 4717931 -184561623 - L1MC4a LINE L1 -485 5636 5428 222 91 0 0 chr6 4717947 4717980 -184561574 + (T)n Simple_repeat Simple_repeat 1 33 0 1868 155 36 7 chr6 4718759 4719062 -184560492 - AluSx SINE Alu 0 312 1 1842 160 7 0 chr6 4720248 4720562 -184558992 + AluJb SINE Alu 1 316 0 423 0 0 0 chr6 4721390 4721437 -184558117 + (TC)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr6 4721436 4721457 -184558097 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 954 169 13 65 chr6 4721962 4722193 -184557361 + MER20 DNA MER1_type 1 219 0 1054 56 0 42 chr6 4723534 4723676 -184555878 - AluSg/x SINE Alu -1 309 174 2058 130 3 10 chr6 4723725 4724025 -184555529 + AluSx SINE Alu 1 298 -14 1669 154 6 91 chr6 4724241 4724571 -184554983 - AluJb SINE Alu -9 303 2 372 211 158 0 chr6 4725872 4726005 -184553549 - L1MB4 LINE L1 -12 6168 6015 * 3469 183 64 33 chr6 4725999 4727048 -184552506 - L1MB4 LINE L1 -11 6667 5590 360 202 48 10 chr6 4727043 4727147 -184552407 - L1MB4 LINE L1 -1433 5211 5104 * 2232 116 0 0 chr6 4727148 4727440 -184552114 - AluSx SINE Alu -16 296 5 1153 208 224 32 chr6 4727500 4728001 -184551553 - L1MB4 LINE L1 -1800 4844 4248 666 248 57 52 chr6 4728005 4728215 -184551339 - MER82 DNA MER2_type 0 653 443 383 303 6 46 chr6 4728261 4728394 -184551160 + MIR SINE MIR 31 164 -44 3176 213 118 72 chr6 4728490 4729932 -184549622 - L1MB4 LINE L1 -2849 3795 2421 2209 118 3 0 chr6 4729932 4730228 -184549326 - AluSx SINE Alu -15 297 1 3176 213 118 72 chr6 4730228 4730526 -184549028 - L1MB4 LINE L1 -4223 2421 2138 1200 100 6 18 chr6 4730526 4730696 -184548858 - FRAM SINE Alu -9 167 1 3176 213 118 72 chr6 4730696 4731674 -184547880 - L1MB4 LINE L1 -4506 2138 776 183 80 0 0 chr6 4731674 4731699 -184547855 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 3176 213 118 72 chr6 4731699 4731874 -184547680 - L1MB4 LINE L1 -5868 776 611 266 280 77 33 chr6 4732174 4732356 -184547198 - L1MB4 LINE L1 -6335 207 18 4862 21 0 9 chr6 4732872 4733446 -184546108 - L1PA3 LINE L1 -1 6154 5586 39892 37 2 2 chr6 4733449 4738504 -184541050 - L1PA3 LINE L1 -1090 5056 2 352 266 79 50 chr6 4739222 4739361 -184540193 + L2 LINE L2 3128 3270 -2 22 35 0 0 chr6 4739628 4739657 -184539897 + AT_rich Low_complexity Low_complexity 1 29 0 2318 89 0 19 chr6 4739722 4740038 -184539516 - AluSg SINE Alu 0 310 1 1627 201 0 13 chr6 4740043 4740351 -184539203 - AluJb SINE Alu -8 304 1 10689 178 30 5 chr6 4740433 4740967 -184538587 - L1PB1 LINE L1 0 6867 6348 2087 92 36 0 chr6 4740967 4741248 -184538306 - AluSg SINE Alu -19 291 1 10689 178 30 5 chr6 4741248 4743113 -184536441 - L1PB1 LINE L1 -519 6348 4350 205 49 0 49 chr6 4743113 4743154 -184536400 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 10689 178 30 5 chr6 4743154 4744230 -184535324 - L1PB1 LINE L1 -2517 4350 3303 51 0 0 0 chr6 4744230 4744281 -184535273 + AT_rich Low_complexity Low_complexity 1 51 0 276 99 64 41 chr6 4744281 4744453 -184535101 + (TTATA)n Simple_repeat Simple_repeat 1 176 0 271 173 13 13 chr6 4744456 4744531 -184535023 + (TAA)n Simple_repeat Simple_repeat 1 75 0 8231 119 60 37 chr6 4744538 4746490 -184533064 - L1PB1 LINE L1 -3493 3369 1389 521 79 8 0 chr6 4746533 4746658 -184532896 - L1PB1 LINE L1 -5700 1163 995 1051 149 0 5 chr6 4746658 4746853 -184532701 - L1PB1 LINE L1 -6669 194 1 768 218 94 24 chr6 4746953 4747523 -184532031 + MER114 LTR ERV 1 648 0 180 0 0 0 chr6 4747565 4747585 -184531969 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1505 212 36 3 chr6 4747824 4748154 -184531400 - MER58B DNA MER1_type 0 341 1 297 232 0 0 chr6 4749088 4749144 -184530410 + MER94 DNA DNA 79 134 0 299 239 83 46 chr6 4749393 4749502 -184530052 - MER5A DNA MER1_type 0 189 77 185 333 31 23 chr6 4750416 4750545 -184529009 + L2 LINE L2 3183 3312 -1 364 254 132 54 chr6 4752009 4752214 -184527340 - L2 LINE L2 -18 3295 3075 227 194 78 108 chr6 4752229 4752358 -184527196 + MIR SINE MIR 57 133 -75 211 324 15 15 chr6 4752480 4752548 -184527006 - L2 LINE L2 -4 3268 3201 380 188 247 39 chr6 4753435 4753589 -184525965 + MIR SINE MIR 48 233 -29 304 345 39 0 chr6 4754310 4754542 -184525012 - L1MC4 LINE L1 -701 7341 7101 1050 89 16 0 chr6 4754589 4754897 -184524657 + (TTCC)n Simple_repeat Simple_repeat 1 313 0 330 295 20 13 chr6 4755015 4755069 -184524485 - L1MC4 LINE L1 -1037 7005 6953 1721 171 34 0 chr6 4755069 4755362 -184524192 - AluJo SINE Alu -9 303 1 330 295 20 13 chr6 4755362 4755456 -184524098 - L1MC4 LINE L1 -1089 6953 6856 556 276 45 78 chr6 4755486 4755729 -184523825 - MIR SINE MIR -15 247 13 246 156 0 0 chr6 4755744 4755789 -184523765 + CT-rich Low_complexity Low_complexity 6 50 0 948 142 11 80 chr6 4757560 4757736 -184521818 - AluJo SINE Alu -22 290 127 252 156 0 0 chr6 4758063 4758108 -184521446 + MER112 DNA MER1_type 205 249 -11 631 262 112 65 chr6 4758362 4758747 -184520807 - L2 LINE L2 -28 3285 2883 366 263 244 25 chr6 4758793 4759109 -184520445 - L2 LINE L2 -645 2669 2285 641 136 40 0 chr6 4759409 4759534 -184520020 - L1MB3 LINE L1 -1 6182 6053 224 317 59 54 chr6 4760655 4760876 -184518678 - MIR SINE MIR -33 229 8 728 226 74 43 chr6 4760986 4761216 -184518338 + MIR SINE MIR 16 252 -10 2582 64 0 0 chr6 4762163 4762474 -184517080 - AluY SINE Alu 0 311 1 295 80 0 20 chr6 4762735 4762785 -184516769 - MLT2A1 LTR ERVL -8 445 397 271 79 89 20 chr6 4762787 4762888 -184516666 + (TA)n Simple_repeat Simple_repeat 2 109 0 2397 101 40 18 chr6 4762919 4763314 -184516240 - MLT2A1 LTR ERVL -40 404 1 3106 170 5 4 chr6 4765069 4765628 -184513926 + L1PA16 LINE L1 5587 6146 -20 521 319 128 24 chr6 4766189 4766590 -184512964 + L1MCa LINE L1 1376 2051 -736 2511 107 6 8 chr6 4766780 4767136 -184512418 + THE1A LTR MaLR 1 355 0 2643 127 8 106 chr6 4767224 4767816 -184511738 + LTR10A LTR ERV1 12 545 -64 309 279 211 19 chr6 4768129 4768441 -184511113 + L1MCa LINE L1 2831 3202 -3224 402 274 135 61 chr6 4768546 4768769 -184510785 + L1MCa LINE L1 3406 3611 -2815 1131 168 25 0 chr6 4768769 4768972 -184510582 + MER6B DNA MER2_type 2 209 -1 402 274 135 61 chr6 4768972 4769207 -184510347 + L1MCa LINE L1 3611 3898 -2528 1603 245 98 14 chr6 4769485 4770037 -184509517 - L1M4 LINE L1 -1856 4788 4191 2532 244 72 73 chr6 4770080 4771362 -184508192 - L1M4 LINE L1 -2692 3952 2700 2248 124 0 0 chr6 4771362 4771669 -184507885 - AluSx SINE Alu -5 307 1 2532 244 72 73 chr6 4771669 4772314 -184507240 - L1M4 LINE L1 -3944 2700 2056 937 188 0 0 chr6 4772345 4772494 -184507060 - FRAM SINE Alu -19 157 9 1100 257 109 35 chr6 4772522 4773318 -184506236 - L1M4 LINE L1 -4732 1914 1076 391 167 0 0 chr6 4773645 4773711 -184505843 - Tigger4(Zombi) DNA MER2_type -2665 66 1 2043 121 13 3 chr6 4774655 4774953 -184504601 - AluSq SINE Alu -12 301 1 2037 255 98 5 chr6 4776850 4777496 -184502058 - L1ME2 LINE L1 -4 6160 5455 940 246 100 36 chr6 4777468 4777967 -184501587 - L1ME2 LINE L1 -1381 4765 4235 * 1534 204 79 78 chr6 4778236 4778991 -184500563 - L1ME2 LINE L1 -15 6218 5359 384 131 0 0 chr6 4779019 4779080 -184500474 + MLT1A1-int LTR MaLR 1662 1722 -13 1759 207 64 0 chr6 4779113 4779456 -184500098 + MLT1A1 LTR MaLR 1 365 0 1315 272 61 43 chr6 4779580 4780283 -184499271 - L1ME2 LINE L1 -968 5247 4532 * 2539 237 136 56 chr6 4780277 4781731 -184497823 - L1ME2 LINE L1 -2228 3987 2418 2437 91 0 3 chr6 4781826 4782133 -184497421 - AluSq SINE Alu -7 306 1 5413 160 62 20 chr6 4782139 4783263 -184496291 - L1MC1 LINE L1 -2 6331 5172 561 265 48 59 chr6 4783254 4783612 -184495942 - L1ME2 LINE L1 -3826 2389 2076 * 401 312 51 22 chr6 4783673 4783811 -184495743 + MER5A DNA MER1_type 33 174 -15 488 221 129 42 chr6 4783817 4784057 -184495497 - L1ME2 LINE L1 -4387 2009 1749 1090 264 123 21 chr6 4784113 4784495 -184495059 + LTR40b LTR ERVL 1 421 -41 940 288 123 83 chr6 4784512 4785284 -184494270 + HERVL40 LTR ERVL 43 845 -4685 258 250 14 0 chr6 4785330 4785402 -184494152 + HERVL40 LTR ERVL 2041 2113 -924 252 246 18 0 chr6 4785517 4785574 -184493980 + HERVL40 LTR ERVL 2214 2271 -766 309 197 0 0 chr6 4786497 4786558 -184492996 + HERVL40 LTR ERVL 2830 2890 -147 * 960 253 42 0 chr6 4786547 4786788 -184492766 + HERVL40 LTR ERVL 5278 5528 -2 925 267 105 24 chr6 4786790 4787161 -184492393 + LTR40a LTR ERVL 1 401 -118 1296 222 4 33 chr6 4787163 4787271 -184492283 + Tigger7 DNA MER2_type 1 111 -2376 1938 166 0 0 chr6 4787271 4787567 -184491987 - AluJo SINE Alu -16 296 1 1296 222 4 33 chr6 4787567 4787733 -184491821 + Tigger7 DNA MER2_type 111 267 -2220 429 216 0 0 chr6 4787734 4787822 -184491732 + Tigger7 DNA MER2_type 2400 2487 -4 502 139 37 56 chr6 4787833 4787941 -184491613 + LTR40a LTR ERVL 410 515 -4 8183 211 81 25 chr6 4788009 4791343 -184488211 - L1MB8 LINE L1 0 6178 2658 815 213 54 76 chr6 4791478 4791496 -184488058 + MER58B DNA MER1_type 71 88 -2332 2408 73 3 3 chr6 4791496 4791796 -184487758 - AluSg SINE Alu -10 300 1 815 213 54 76 chr6 4791796 4792054 -184487500 + MER58B DNA MER1_type 88 341 0 2305 97 0 0 chr6 4795684 4795984 -184483570 + AluSx SINE Alu 1 300 -12 210 282 118 0 chr6 4796377 4796462 -184483092 - MIR3 SINE MIR -8 200 106 673 256 36 15 chr6 4796630 4796825 -184482729 + MER58 DNA MER1_type 2 200 -2220 1165 105 7 0 chr6 4796870 4797022 -184482532 - AluSq SINE Alu -160 153 1 228 67 0 0 chr6 4797108 4797138 -184482416 + (TG)n Simple_repeat Simple_repeat 2 31 0 241 326 0 0 chr6 4797157 4797246 -184482308 + L1MC4 LINE L1 6615 6703 -1339 252 235 0 0 chr6 4797246 4797314 -184482240 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 249 299 23 0 chr6 4797315 4797402 -184482152 + L1MC4 LINE L1 6615 6703 -1339 245 299 23 0 chr6 4797338 4797425 -184482129 - L1MC4 LINE L1 -1339 6703 6615 * 204 217 0 0 chr6 4797428 4797474 -184482080 + (TA)n Simple_repeat Simple_repeat 2 47 0 269 299 86 8 chr6 4797995 4798112 -184481442 + L2 LINE L2 3186 3311 -2 827 152 0 8 chr6 4799298 4799423 -184480131 + FLAM_C SINE Alu 1 124 -19 1851 83 8 12 chr6 4799481 4799735 -184479819 + AluY SINE Alu 43 295 -16 969 159 6 29 chr6 4799736 4799906 -184479648 + AluJo/FRAM SINE Alu 138 303 -9 1126 258 54 81 chr6 4800890 4801444 -184478110 - MER34 LTR ERV1 -3 539 1 482 179 36 27 chr6 4801963 4802075 -184477479 - L1MC4 LINE L1 -2 8040 7928 218 205 0 0 chr6 4802094 4802133 -184477421 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 465 66 0 0 chr6 4802433 4802494 -184477060 + (TA)n Simple_repeat Simple_repeat 2 62 0 262 250 62 0 chr6 4802528 4802592 -184476962 - U6 snRNA snRNA -1 106 39 263 254 112 52 chr6 4803201 4803335 -184476219 - MIR3 SINE MIR -62 146 5 336 287 143 56 chr6 4803380 4803666 -184475888 - MLT1K LTR MaLR -1 587 277 2218 92 10 26 chr6 4803780 4804085 -184475469 + AluSp SINE Alu 1 300 -13 431 196 27 9 chr6 4807445 4807557 -184471997 - L1MA4A LINE L1 -1 6302 6189 1493 161 19 74 chr6 4809013 4809337 -184470217 - AluJb SINE Alu -6 306 1 304 352 102 51 chr6 4811112 4811234 -184468320 + L2 LINE L2 2653 2767 -505 2117 102 3 16 chr6 4811234 4811537 -184468017 - AluY SINE Alu -12 299 1 304 352 102 51 chr6 4811537 4811962 -184467592 + L2 LINE L2 2767 3263 -9 2268 55 41 17 chr6 4812497 4812790 -184466764 - AluY SINE Alu -11 300 1 23 86 0 0 chr6 4813329 4813387 -184466167 + AT_rich Low_complexity Low_complexity 1 58 0 700 241 76 101 chr6 4813434 4813908 -184465646 - LTR37B LTR ERV1 -2 466 5 226 278 118 66 chr6 4814156 4814262 -184465292 - L2 LINE L2 -506 2808 2709 1942 153 138 31 chr6 4814262 4814647 -184464907 - MSTC LTR MaLR -2 426 1 226 278 118 66 chr6 4814647 4814752 -184464802 - L2 LINE L2 -605 2709 2586 28 0 0 0 chr6 4814918 4814946 -184464608 + AT_rich Low_complexity Low_complexity 1 28 0 1009 211 57 0 chr6 4815353 4815562 -184463992 - MER58A DNA MER1_type -1 223 3 326 192 111 134 chr6 4815638 4815810 -184463744 - L1MCc LINE L1 -5396 1027 860 362 335 78 9 chr6 4816064 4816294 -184463260 - L1MCc LINE L1 -6091 332 87 5411 136 22 23 chr6 4817046 4817919 -184461635 + MER4D LTR ERV1 1 872 0 1095 154 104 36 chr6 4821070 4821290 -184458264 - MER46A DNA MER2_type 0 236 2 2086 211 112 6 chr6 4821476 4822011 -184457543 + L1MB4 LINE L1 5589 6180 0 1958 132 11 0 chr6 4822300 4822581 -184456973 - AluSx SINE Alu -28 284 1 213 39 0 0 chr6 4822661 4822687 -184456867 + (TG)n Simple_repeat Simple_repeat 1 26 0 221 204 0 0 chr6 4823481 4823525 -184456029 - L2 LINE L2 -7 3306 3263 4256 135 67 21 chr6 4824624 4825371 -184454183 - L1MA5 LINE L1 -3 6297 5517 1821 35 0 31 chr6 4825371 4825597 -184453957 + AluY SINE Alu 92 310 -1 210 281 18 0 chr6 4825617 4825674 -184453880 + MER5B DNA MER1_type 121 178 0 2263 50 10 17 chr6 4827065 4827362 -184452192 - AluY SINE Alu 0 311 17 377 242 144 70 chr6 4828668 4828953 -184450601 - L1ME4a LINE L1 -270 5920 5615 291 54 0 0 chr6 4829089 4829126 -184450428 + (TG)n Simple_repeat Simple_repeat 2 38 0 1569 118 126 16 chr6 4829127 4829381 -184450173 - AluSx SINE Alu -26 286 5 328 228 167 83 chr6 4829772 4829918 -184449636 - L1ME4a LINE L1 -1487 4728 4596 195 42 0 0 chr6 4829918 4829942 -184449612 + (TG)n Simple_repeat Simple_repeat 1 24 0 328 228 167 83 chr6 4829942 4830119 -184449435 - L1ME4a LINE L1 -1619 4596 4378 753 278 80 36 chr6 4830665 4831159 -184448395 - L1ME4a LINE L1 -4559 1658 1112 354 45 0 0 chr6 4831159 4831203 -184448351 + (CA)n Simple_repeat Simple_repeat 2 45 0 753 278 80 36 chr6 4831203 4831320 -184448234 - L1ME4a LINE L1 -5105 1112 1002 1417 287 69 47 chr6 4831364 4832315 -184447239 - L1ME4a LINE L1 -5381 1015 44 245 292 191 0 chr6 4832730 4832819 -184446735 + MIR3 SINE MIR 75 180 -28 631 314 98 25 chr6 4832823 4833180 -184446374 - L2 LINE L2 -20 3293 2911 1586 198 25 38 chr6 4833819 4834187 -184445367 - MLT1A1 LTR MaLR -2 363 1 339 278 101 65 chr6 4835472 4835720 -184443834 + L1MC4a LINE L1 5676 5932 -1876 26 30 0 0 chr6 4835983 4836016 -184443538 + AT_rich Low_complexity Low_complexity 1 33 0 191 372 26 0 chr6 4838178 4838256 -184441298 - MIR SINE MIR -122 140 61 863 128 0 0 chr6 4838803 4838928 -184440626 + FLAM_C SINE Alu 1 125 -18 1476 194 3 7 chr6 4838940 4839234 -184440320 + AluJo SINE Alu 1 293 -19 186 156 0 0 chr6 4839937 4839982 -184439572 + T-rich Low_complexity Low_complexity 1 45 0 1365 105 35 18 chr6 4840179 4840408 -184439146 - L1MA8 LINE L1 -5 6286 6054 22 0 0 0 chr6 4845995 4846017 -184433537 + AT_rich Low_complexity Low_complexity 1 22 0 435 223 116 0 chr6 4846498 4846619 -184432935 - LTR16A LTR ERVL 0 450 316 289 280 80 13 chr6 4846662 4846812 -184432742 - LTR16A LTR ERVL -290 160 1 1539 240 109 46 chr6 4846907 4847556 -184431998 + L1MC4a LINE L1 7106 7802 -6 297 308 25 25 chr6 4848257 4848377 -184431177 - HERV16 LTR ERVL -1450 4314 4195 462 281 62 0 chr6 4849118 4849328 -184430226 - HERV16 LTR ERVL -3880 1116 894 227 139 23 0 chr6 4849973 4850016 -184429538 - LTR16A LTR ERVL -83 367 324 361 176 63 142 chr6 4850773 4850978 -184428576 + MER20 DNA MER1_type 31 219 0 2187 47 0 14 chr6 4852900 4853179 -184426375 + AluY SINE Alu 25 299 -12 1895 114 0 4 chr6 4855002 4855283 -184424271 - AluSc SINE Alu -16 293 14 773 98 98 24 chr6 4855290 4855413 -184424141 - AluSq/x SINE Alu -180 133 2 2058 110 0 0 chr6 4856054 4856346 -184423208 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr6 4856350 4856372 -184423182 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 4857963 4857991 -184421563 + AT_rich Low_complexity Low_complexity 1 28 0 260 259 126 44 chr6 4858820 4858955 -184420599 - MIR SINE MIR -41 221 76 499 261 113 53 chr6 4859237 4859555 -184419999 + L1ME4a LINE L1 5490 5826 -295 25 65 0 0 chr6 4860398 4860444 -184419110 + AT_rich Low_complexity Low_complexity 1 46 0 369 228 55 39 chr6 4860899 4861026 -184418528 - MIR3 SINE MIR -66 142 14 3782 237 64 19 chr6 4861679 4862858 -184416696 + L1M4 LINE L1 2570 3800 -2346 539 176 0 0 chr6 4862858 4862949 -184416605 + AluJ/FRAM SINE Alu 217 307 -5 3089 160 52 86 chr6 4862949 4863750 -184415804 + L1MB7 LINE L1 5392 6165 -19 406 287 63 33 chr6 4863787 4864288 -184415266 + L1MEc LINE L1 2102 2583 -3632 544 68 0 34 chr6 4864290 4864378 -184415176 + (GGAGAA)n Simple_repeat Simple_repeat 3 87 0 782 265 251 49 chr6 4864389 4864875 -184414679 + MLT1E LTR MaLR 10 593 0 447 52 0 0 chr6 4864906 4864964 -184414590 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 333 330 0 9 chr6 4865172 4865281 -184414273 - MIR SINE MIR -98 164 57 2547 58 0 0 chr6 4865390 4865698 -184413856 - AluY SINE Alu -3 308 1 1728 139 0 35 chr6 4866303 4866591 -184412963 + AluJb SINE Alu 1 278 -34 2304 70 0 0 chr6 4866769 4867067 -184412487 - AluY SINE Alu -9 302 5 269 270 14 0 chr6 4868112 4868186 -184411368 + (TG)n Simple_repeat Simple_repeat 1 75 0 608 248 56 47 chr6 4868205 4868419 -184411135 - L1ME1 LINE L1 -5 6161 5946 310 278 31 52 chr6 4869509 4869606 -184409948 + L1M4 LINE L1 5248 5342 -804 480 195 16 47 chr6 4869606 4869688 -184409866 + L1MB3 LINE L1 6058 6136 -47 768 179 0 8 chr6 4869688 4869822 -184409732 + FLAM_A SINE Alu 1 133 0 480 195 16 47 chr6 4869822 4869867 -184409687 + L1MB3 LINE L1 6136 6181 -2 23 54 0 0 chr6 4869867 4869904 -184409650 + AT_rich Low_complexity Low_complexity 1 37 0 2017 250 104 18 chr6 4869920 4870317 -184409237 + L1ME3A LINE L1 5290 5651 -519 1648 152 39 7 chr6 4870317 4870600 -184408954 + AluJo SINE Alu 1 292 -20 2017 250 104 18 chr6 4870600 4870988 -184408566 + L1ME3A LINE L1 5651 6152 -18 402 21 0 0 chr6 4870988 4871035 -184408519 + (TC)n Simple_repeat Simple_repeat 2 48 0 243 0 0 0 chr6 4871034 4871061 -184408493 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 2083 115 0 0 chr6 4871061 4871357 -184408197 - AluSg SINE Alu -14 296 1 1800 158 0 0 chr6 4871413 4871691 -184407863 - AluSx SINE Alu -34 278 1 1767 174 0 0 chr6 4871726 4872025 -184407529 + AluSx SINE Alu 1 299 -13 2179 156 5 22 chr6 4872656 4873027 -184406527 - MLT1A1 LTR MaLR 0 365 1 652 242 27 13 chr6 4873097 4873246 -184406308 + MIR SINE MIR 84 234 -28 195 42 0 0 chr6 4873282 4873306 -184406248 + (ATG)n Simple_repeat Simple_repeat 3 26 0 330 302 12 0 chr6 4873334 4873420 -184406134 - L2 LINE L2 -189 3083 2997 237 65 0 0 chr6 4873438 4873469 -184406085 + (A)n Simple_repeat Simple_repeat 1 31 0 195 146 55 109 chr6 4873609 4873664 -184405890 - L3 LINE CR1 -1090 487 436 1000 156 22 11 chr6 4874031 4874211 -184405343 - MLT1B LTR MaLR -1 389 208 273 225 14 14 chr6 4874255 4874326 -184405228 + L1ME3A LINE L1 6031 6101 -69 1289 156 100 26 chr6 4874326 4874400 -184405154 - MLT1B LTR MaLR -101 289 222 276 30 0 0 chr6 4874400 4874433 -184405121 + (TA)n Simple_repeat Simple_repeat 2 34 0 1563 108 0 0 chr6 4874433 4874647 -184404907 - AluSg/x SINE Alu -27 283 70 1289 156 100 26 chr6 4874647 4874840 -184404714 - MLT1B LTR MaLR -167 223 1 1112 181 45 0 chr6 4875463 4875684 -184403870 + L1MB3 LINE L1 5915 6145 -38 1074 159 125 4 chr6 4875689 4875921 -184403633 + AluJb SINE Alu 40 299 -13 2118 102 3 3 chr6 4875982 4876275 -184403279 + AluSx SINE Alu 1 293 -19 5434 104 1 5 chr6 4878505 4879275 -184400279 - L1PB2 LINE L1 0 6151 5385 1352 61 0 0 chr6 4879275 4879440 -184400114 - AluY SINE Alu 0 311 147 6437 184 7 16 chr6 4879440 4880795 -184398759 - L1PB2 LINE L1 -745 5401 4059 192 293 37 12 chr6 4881195 4881277 -184398277 + MIR SINE MIR 155 238 -24 495 33 0 0 chr6 4881505 4881566 -184397988 + (TC)n Simple_repeat Simple_repeat 1 61 0 468 0 0 0 chr6 4881565 4881617 -184397937 + (CA)n Simple_repeat Simple_repeat 1 52 0 * 702 172 15 1 chr6 4881927 4882070 -184397484 + L1 LINE L1 3607 3756 -2390 3131 147 8 0 chr6 4882581 4883065 -184396489 + L1 LINE L1 3742 4229 -1917 239 217 0 33 chr6 4883084 4883144 -184396410 - FRAM/FAM SINE Alu -109 57 1 2394 103 3 0 chr6 4883150 4883460 -184396094 - AluSx SINE Alu -1 311 1 749 118 118 33 chr6 4883463 4883589 -184395965 - L1MB4 LINE L1 -213 5967 5824 2877 169 75 51 chr6 4883589 4884299 -184395255 - LTR8A LTR ERV1 0 727 1 749 118 118 33 chr6 4884299 4884325 -184395229 - L1MB4 LINE L1 -356 5824 5802 1039 162 17 17 chr6 4884333 4884506 -184395048 + AluJo SINE Alu 85 257 -55 728 153 0 0 chr6 4884509 4884620 -184394934 + AluJb SINE Alu 198 308 -4 307 353 77 23 chr6 4884625 4884730 -184394824 + MIR SINE MIR 30 128 -134 1939 216 59 22 chr6 4884730 4885271 -184394283 - MER34B LTR ERV1 0 565 5 307 353 77 23 chr6 4885271 4885386 -184394168 + MIR SINE MIR 128 262 0 2371 82 0 3 chr6 4885757 4886051 -184393503 - AluSc SINE Alu -16 293 1 2509 78 0 0 chr6 4887424 4887732 -184391822 - AluY SINE Alu -3 308 1 4974 174 49 26 chr6 4888445 4889436 -184390118 + L1MC3 LINE L1 6687 7705 -80 279 0 0 0 chr6 4889436 4889467 -184390087 + (TG)n Simple_repeat Simple_repeat 2 32 0 4974 174 49 26 chr6 4889467 4889537 -184390017 + L1MC3 LINE L1 7705 7772 -13 1846 166 0 20 chr6 4889538 4889834 -184389720 - AluJo SINE Alu -22 290 1 1431 212 42 31 chr6 4889990 4890349 -184389205 - MLT1A2 LTR MaLR -11 363 1 4401 195 45 57 chr6 4891197 4892293 -184387261 - L1MD2 LINE L1 -22 6320 5238 4426 230 93 40 chr6 4892293 4892485 -184387069 - L1MD2 LINE L1 -1332 4797 4617 189 0 0 0 chr6 4892485 4892506 -184387048 + (CA)n Simple_repeat Simple_repeat 2 22 0 4426 230 93 40 chr6 4892506 4893532 -184386022 - L1MD2 LINE L1 -1512 4617 3467 1606 192 11 3 chr6 4893532 4893819 -184385735 - AluJo SINE Alu -23 289 1 4426 230 93 40 chr6 4893819 4894253 -184385301 - L1MD2 LINE L1 -2662 3467 3057 575 209 74 0 chr6 4894240 4894388 -184385166 - L1MD2 LINE L1 -3302 2827 2669 * 818 247 38 13 chr6 4894509 4894744 -184384810 - L1MD2 LINE L1 -3450 2679 2439 2413 233 106 22 chr6 4894748 4894782 -184384772 - L1MD2 LINE L1 -3876 2434 2404 2196 108 118 45 chr6 4894782 4895093 -184384461 + MSTA LTR MaLR 1 349 -79 1772 135 20 94 chr6 4895093 4895434 -184384120 + AluYb8 SINE Alu 1 316 -2 2196 108 118 45 chr6 4895434 4895519 -184384035 + MSTA LTR MaLR 349 426 -2 2413 233 106 22 chr6 4895519 4896297 -184383257 - L1MD2 LINE L1 -3906 2404 1554 351 239 104 33 chr6 4896291 4896577 -184382977 - L1MD2 LINE L1 -5088 1046 725 * 304 287 84 72 chr6 4896620 4896979 -184382575 - L1MD2 LINE L1 -5487 632 270 2273 23 0 0 chr6 4897181 4897442 -184382112 + L1PA4 LINE L1 5891 6151 -4 250 262 285 12 chr6 4897584 4897756 -184381798 + MIR SINE MIR 19 237 -25 22 0 0 0 chr6 4898095 4898117 -184381437 + AT_rich Low_complexity Low_complexity 1 22 0 1714 197 58 42 chr6 4899901 4900182 -184379372 + LTR40a LTR ERVL 82 374 -145 3279 151 30 0 chr6 4900182 4900681 -184378873 + MLT2B3 LTR ERVL 1 519 -35 261 0 0 0 chr6 4900681 4900710 -184378844 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 3279 151 30 0 chr6 4900710 4900748 -184378806 + MLT2B3 LTR ERVL 519 554 0 1714 197 58 42 chr6 4900748 4900897 -184378657 + LTR40a LTR ERVL 374 519 0 21 0 0 0 chr6 4901615 4901636 -184377918 + AT_rich Low_complexity Low_complexity 1 21 0 2128 93 0 0 chr6 4902327 4902597 -184376957 - AluSc SINE Alu -4 305 36 2247 88 10 3 chr6 4903229 4903523 -184376031 - AluSx SINE Alu -16 296 1 180 0 0 0 chr6 4903526 4903546 -184376008 + (T)n Simple_repeat Simple_repeat 1 20 0 281 365 0 0 chr6 4903848 4904018 -184375536 + (CAAG)n Simple_repeat Simple_repeat 1 170 0 436 220 136 0 chr6 4904217 4904335 -184375219 + MIR SINE MIR 97 230 -32 2690 29 3 0 chr6 4906105 4906412 -184373142 + AluY SINE Alu 1 308 -3 23 78 0 0 chr6 4906789 4906840 -184372714 + GC_rich Low_complexity Low_complexity 1 51 0 1095 147 101 150 chr6 4908097 4908403 -184371151 + AluJo SINE Alu 2 292 -10 2207 105 7 3 chr6 4908457 4908752 -184370802 + AluSx SINE Alu 1 296 -16 600 298 31 28 chr6 4909376 4909698 -184369856 + L2 LINE L2 2454 2776 -538 230 261 14 14 chr6 4910027 4910096 -184369458 + L1P LINE L1 2749 2817 -3329 2485 83 0 13 chr6 4910113 4910426 -184369128 + AluSc SINE Alu 1 309 0 2215 109 0 0 chr6 4910918 4911235 -184368319 + AluSx SINE Alu 1 317 0 1937 161 73 3 chr6 4911241 4911582 -184367972 + MLT1A1 LTR MaLR 1 365 0 1964 151 3 7 chr6 4911762 4912053 -184367501 + AluJo SINE Alu 1 290 -22 199 276 143 9 chr6 4912428 4912533 -184367021 - MIR SINE MIR -11 251 133 895 136 11 68 chr6 4912725 4912901 -184366653 - AluJb SINE Alu -18 294 129 1659 165 81 9 chr6 4913104 4913230 -184366324 - L1MB8 LINE L1 0 6178 6063 1702 125 42 42 chr6 4913230 4913518 -184366036 - AluJo SINE Alu -18 294 7 1659 165 81 9 chr6 4913518 4913736 -184365818 - L1MB8 LINE L1 -115 6063 5809 2101 129 0 0 chr6 4913808 4914087 -184365467 - AluSg SINE Alu -19 291 13 529 107 0 0 chr6 4914193 4914277 -184365277 - Alu SINE Alu 0 309 226 225 0 0 0 chr6 4914885 4914910 -184364644 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 758 142 0 0 chr6 4914924 4915044 -184364510 + L1MB2 LINE L1 6012 6131 -40 1469 152 9 4 chr6 4915045 4915275 -184364279 + AluJb SINE Alu 1 231 -81 478 104 30 0 chr6 4915307 4915374 -184364180 + AluJb SINE Alu 224 292 -20 273 47 116 0 chr6 4915376 4915419 -184364135 + L1MB2 LINE L1 6122 6169 -2 2060 153 3 0 chr6 4916209 4916504 -184363050 - AluJb SINE Alu -16 296 1 1752 159 33 0 chr6 4916780 4917051 -184362503 - AluJb SINE Alu -30 282 3 1854 232 119 10 chr6 4917307 4917795 -184361759 - MLT1H LTR MaLR 0 549 9 844 210 17 6 chr6 4918481 4918657 -184360897 + MER5B DNA MER1_type 1 178 0 2551 231 83 11 chr6 4919107 4919942 -184359612 - L1 LINE L1 -2478 3668 2774 1883 142 31 14 chr6 4919951 4920239 -184359315 - AluSx SINE Alu -19 293 1 489 70 28 28 chr6 4920243 4920314 -184359240 - Charlie1 DNA MER1_type -2011 750 680 18616 126 22 55 chr6 4920534 4923844 -184355710 - L1P LINE L1 -2934 3212 12 707 251 97 9 chr6 4923857 4924267 -184355287 - L1ME LINE L1 -676 5486 5045 955 143 0 0 chr6 4924403 4924536 -184355018 - FLAM_C SINE Alu -10 133 1 1592 179 98 29 chr6 4924539 4924795 -184354759 - L1MA4 LINE L1 -254 6046 5809 252 0 0 0 chr6 4924795 4924823 -184354731 + (TG)n Simple_repeat Simple_repeat 2 29 0 1592 179 98 29 chr6 4924823 4924856 -184354698 - L1MA4 LINE L1 -491 5809 5780 1697 149 0 0 chr6 4924856 4925098 -184354456 - AluSx SINE Alu -70 242 1 1592 179 98 29 chr6 4925098 4925186 -184354368 - L1MA4 LINE L1 -520 5780 5642 1524 190 104 41 chr6 4925189 4925262 -184354292 - HERVL74 LTR ERVL -4071 1614 1547 1887 148 0 17 chr6 4925262 4925589 -184353965 - AluSx SINE Alu 0 312 1 1524 190 104 41 chr6 4925589 4925930 -184353624 - HERVL74 LTR ERVL -4138 1547 1174 24 0 0 0 chr6 4925930 4925954 -184353600 + AT_rich Low_complexity Low_complexity 1 24 0 1548 158 17 45 chr6 4926202 4926524 -184353030 - AluJb SINE Alu 0 315 2 1955 135 7 4 chr6 4927895 4928176 -184351378 + AluJo SINE Alu 1 282 -30 192 40 0 0 chr6 4928181 4928206 -184351348 + (GA)n Simple_repeat Simple_repeat 2 26 0 241 156 16 16 chr6 4928206 4928245 -184351309 + GA-rich Low_complexity Low_complexity 3 65 0 200 250 0 59 chr6 4929860 4929928 -184349626 + MIR3 SINE MIR 114 177 -31 2082 72 7 65 chr6 4929947 4930151 -184349403 - AluSx SINE Alu 0 323 142 2093 129 0 19 chr6 4930151 4930469 -184349085 - AluSx SINE Alu 0 312 1 2082 72 7 65 chr6 4930469 4930596 -184348958 - AluSx SINE Alu -181 142 9 211 316 0 42 chr6 4931079 4931174 -184348380 - L2 LINE L2 -533 2781 2691 2192 97 3 7 chr6 4931195 4931484 -184348070 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr6 4931484 4931509 -184348045 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 257 111 0 0 chr6 4931509 4931545 -184348009 + Alu SINE Alu 252 287 -14 342 67 0 0 chr6 4931545 4931590 -184347964 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 2508 144 18 81 chr6 4931685 4931735 -184347819 + L1MB7 LINE L1 5647 5699 -485 1947 188 14 3 chr6 4931735 4932096 -184347458 + MLT1A1 LTR MaLR 1 365 0 2508 144 18 81 chr6 4932096 4932599 -184346955 + L1MB7 LINE L1 5699 6165 -19 1500 181 28 11 chr6 4932633 4932920 -184346634 + AluJo SINE Alu 15 306 -6 181 336 105 14 chr6 4932937 4933080 -184346474 - L2 LINE L2 -711 2603 2448 320 317 19 0 chr6 4933863 4933967 -184345587 + MER3 DNA MER1_type 1 106 -103 912 144 139 16 chr6 4934504 4934698 -184344856 + MER20 DNA MER1_type 2 219 0 212 273 18 109 chr6 4935751 4935861 -184343693 + MIR3 SINE MIR 97 196 -12 283 244 12 12 chr6 4935913 4935999 -184343555 + CT-rich Low_complexity Low_complexity 2 87 0 205 217 116 74 chr6 4936562 4936751 -184342803 + L2 LINE L2 2555 2751 -563 1980 230 23 7 chr6 4936823 4937266 -184342288 - MER82 DNA MER2_type 0 653 204 2437 141 53 2 chr6 4937399 4937810 -184341744 + MSTB1 LTR MaLR 1 432 0 270 0 0 0 chr6 4937818 4937848 -184341706 + (T)n Simple_repeat Simple_repeat 1 30 0 544 262 28 14 chr6 4938162 4938303 -184341251 - MER82 DNA MER2_type -510 143 1 233 146 21 0 chr6 4938607 4938655 -184340899 + CT-rich Low_complexity Low_complexity 3 51 0 218 184 0 0 chr6 4938815 4938853 -184340701 + (TATG)n Simple_repeat Simple_repeat 3 40 0 188 290 48 0 chr6 4938958 4939020 -184340534 + L2 LINE L2 3239 3303 -10 519 237 9 0 chr6 4940367 4940481 -184339073 - L2 LINE L2 -3 3310 3196 693 279 44 24 chr6 4940800 4941209 -184338345 + L1M4 LINE L1 4596 5012 -1134 1299 125 36 10 chr6 4941209 4941401 -184338153 + AluJo SINE Alu 86 282 -30 453 115 0 0 chr6 4941406 4941493 -184338061 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 970 128 0 0 chr6 4941517 4941650 -184337904 + FLAM_C SINE Alu 1 133 0 1251 153 8 16 chr6 4941650 4941892 -184337662 + L1MA4 LINE L1 6055 6294 -6 676 217 31 25 chr6 4941893 4942054 -184337500 + HERVL74 LTR ERVL 1610 1771 -3914 1101 111 6 19 chr6 4942113 4942275 -184337279 + AluSg/x SINE Alu 132 291 -18 1386 194 23 0 chr6 4943432 4943690 -184335864 + HERVL74 LTR ERVL 1765 2028 -3657 * 2387 194 52 61 chr6 4943678 4944331 -184335223 + HERVL74 LTR ERVL 4615 5261 -424 845 250 23 5 chr6 4944361 4944577 -184334977 + HERVL74 LTR ERVL 5376 5595 -90 1890 158 105 3 chr6 4944804 4945177 -184334377 + MER74A LTR ERVL 121 531 -27 2415 86 0 6 chr6 4945210 4945525 -184334029 - AluSq SINE Alu 0 313 1 294 211 0 0 chr6 4946171 4946223 -184333331 - MLT1H1 LTR MaLR -3 592 541 2444 158 10 2 chr6 4946223 4946640 -184332914 + L1MB3 LINE L1 5659 6078 -105 772 229 70 111 chr6 4947217 4947247 -184332307 - MLT1H1 LTR MaLR -37 518 488 2334 59 0 0 chr6 4947247 4947518 -184332036 - AluY SINE Alu -18 293 23 772 229 70 111 chr6 4947518 4947906 -184331648 - MLT1H1 LTR MaLR -67 488 106 1919 150 0 7 chr6 4947906 4948199 -184331355 + AluJb SINE Alu 5 295 -17 772 229 70 111 chr6 4948199 4948301 -184331253 - MLT1H1 LTR MaLR -449 106 1 428 247 0 22 chr6 4948377 4948466 -184331088 - MER81 DNA DNA -27 87 1 378 0 0 0 chr6 4949385 4949427 -184330127 + (TG)n Simple_repeat Simple_repeat 2 43 0 1200 157 47 120 chr6 4949431 4949730 -184329824 - AluJo SINE Alu -35 277 1 211 250 11 91 chr6 4950629 4950717 -184328837 + MIR SINE MIR 92 144 -64 2245 119 0 0 chr6 4950765 4951060 -184328494 - AluSg SINE Alu -15 295 1 8893 161 122 33 chr6 4951157 4952765 -184326789 + L1M4c LINE L1 31 1844 -4540 2203 143 41 48 chr6 4952765 4953200 -184326354 - MSTB1 LTR MaLR 0 432 1 8893 161 122 33 chr6 4953200 4953550 -184326004 + L1M4c LINE L1 1844 2162 -4222 745 183 0 29 chr6 4953553 4953690 -184325864 - FLAM_C SINE Alu 0 133 1 729 101 36 36 chr6 4953719 4953858 -184325696 + L1MB3 LINE L1 6044 6182 -1 220 277 24 12 chr6 4954492 4954575 -184324979 + GA-rich Low_complexity Low_complexity 1 84 0 1074 153 0 28 chr6 4954577 4954754 -184324800 + FRAM SINE Alu 5 176 0 442 343 78 0 chr6 4955292 4955511 -184324043 - MIR SINE MIR -7 255 20 5586 110 52 5 chr6 4955661 4956494 -184323060 + MER4D LTR ERV1 1 872 0 262 129 32 32 chr6 4957021 4957083 -184322471 + CT-rich Low_complexity Low_complexity 1 62 0 840 153 98 37 chr6 4957092 4957255 -184322299 - FAM SINE Alu 0 175 3 4126 198 41 13 chr6 4957262 4958166 -184321388 - Charlie1a DNA MER1_type -268 1187 259 738 205 12 58 chr6 4958170 4958341 -184321213 - Charlie1a DNA MER1_type -1291 164 2 2287 89 13 7 chr6 4958527 4958829 -184320725 + AluSx SINE Alu 1 304 -8 1920 112 45 17 chr6 4958857 4959144 -184320410 - AluJo SINE Alu -17 295 1 1815 179 0 0 chr6 4960151 4960453 -184319101 + AluJo SINE Alu 1 302 -10 521 216 181 15 chr6 4960695 4960894 -184318660 + LTR48 LTR ERV1 490 721 -66 1029 152 0 18 chr6 4960894 4961058 -184318496 - FRAM SINE Alu -16 160 1 512 120 13 0 chr6 4961058 4961133 -184318421 + LTR49 LTR ERV1 520 595 0 496 283 122 5 chr6 4961143 4961348 -184318206 - L1MC/D LINE L1 -2021 5787 5559 1868 136 0 85 chr6 4961589 4961920 -184317634 - AluSx SINE Alu -9 303 1 571 189 28 56 chr6 4962411 4962554 -184317000 + Tigger8 DNA MER2_type 154 292 -374 298 280 93 47 chr6 4962689 4962925 -184316629 + L1MEd LINE L1 496 742 -5377 1207 141 6 0 chr6 4963168 4963345 -184316209 - AluJo SINE Alu -3 309 132 281 189 44 0 chr6 4963346 4963436 -184316118 + (TA)n Simple_repeat Simple_repeat 2 95 0 660 122 122 0 chr6 4963437 4963544 -184316010 - FLAM_C SINE Alu -13 120 1 641 208 63 35 chr6 4965445 4965665 -184313889 - L1MC2 LINE L1 -1 6343 6159 714 194 0 16 chr6 4965667 4965796 -184313758 - AluJo SINE Alu -184 128 2 2397 154 67 29 chr6 4965803 4966393 -184313161 - L1MC2 LINE L1 -2 6298 5721 48 43 0 0 chr6 4966397 4966466 -184313088 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr6 4968134 4968155 -184311399 + AT_rich Low_complexity Low_complexity 1 21 0 1527 207 200 18 chr6 4968320 4968774 -184310780 - MLT1F LTR MaLR -3 539 3 558 53 13 0 chr6 4969813 4969888 -184309666 + L1PA5 LINE L1 6079 6154 0 2255 98 6 3 chr6 4969894 4970221 -184309333 - HSMAR2 DNA Mariner -970 332 5 761 171 32 21 chr6 4970282 4970469 -184309085 - Charlie1 DNA MER1_type -7 2754 2566 517 228 19 84 chr6 4970509 4970546 -184309008 + L2 LINE L2 3113 3151 -162 197 33 33 0 chr6 4970546 4970576 -184308978 + (TA)n Simple_repeat Simple_repeat 2 32 0 2249 92 14 3 chr6 4970576 4970871 -184308683 - AluSc SINE Alu -11 298 1 517 228 19 84 chr6 4970871 4971047 -184308507 + L2 LINE L2 3149 3313 0 408 261 96 50 chr6 4971083 4971282 -184308272 - MIR SINE MIR -26 236 29 314 252 36 58 chr6 4971468 4971607 -184307947 + L1ME4a LINE L1 5978 6113 -8 1653 182 27 3 chr6 4971686 4971983 -184307571 + AluJo SINE Alu 1 304 -8 2194 103 7 3 chr6 4972003 4972295 -184307259 + AluSg SINE Alu 2 294 -16 21 0 0 0 chr6 4972427 4972448 -184307106 + AT_rich Low_complexity Low_complexity 1 21 0 438 236 0 0 chr6 4972533 4972622 -184306932 - MER96B DNA MER1_type? 0 417 329 564 178 0 0 chr6 4972635 4972742 -184306812 + (TG)n Simple_repeat Simple_repeat 2 108 0 2074 101 0 24 chr6 4972750 4973037 -184306517 - AluSx SINE Alu -32 280 1 4725 88 5 0 chr6 4973037 4973660 -184305894 - L1PA11 LINE L1 -135 6039 5414 684 89 0 0 chr6 4973669 4973759 -184305795 - AluSp/q SINE Alu -11 302 213 685 159 119 99 chr6 4973865 4974117 -184305437 - MER69 DNA AcHobo -5 2521 2265 1606 126 56 34 chr6 4974186 4974455 -184305099 + AluSx SINE Alu 1 275 -37 31 0 0 0 chr6 4974456 4974487 -184305067 + AT_rich Low_complexity Low_complexity 1 31 0 255 133 22 44 chr6 4974571 4974706 -184304848 + (TA)n Simple_repeat Simple_repeat 1 132 0 240 283 152 0 chr6 4974849 4974987 -184304567 - MLT1E LTR MaLR -398 195 37 472 277 32 27 chr6 4975004 4975313 -184304241 - MER69 DNA AcHobo -2080 446 95 225 0 0 0 chr6 4975490 4975515 -184304039 + (T)n Simple_repeat Simple_repeat 1 25 0 1027 138 27 43 chr6 4975522 4975710 -184303844 + Tigger1 DNA MER2_type 1625 1809 -609 567 53 0 0 chr6 4975716 4975792 -184303762 - L1PA6 LINE L1 0 6154 6079 195 162 0 0 chr6 4975872 4975909 -184303645 + (ATGGTG)n Simple_repeat Simple_repeat 5 41 0 2610 133 36 2 chr6 4975929 4976343 -184303211 + MSTA LTR MaLR 1 428 0 237 79 0 0 chr6 4976835 4976873 -184302681 - L1MB3 LINE L1 -2 6181 6144 1959 138 0 26 chr6 4977034 4977338 -184302216 - AluJb SINE Alu -16 296 1 268 317 62 21 chr6 4977453 4977598 -184301956 + MIR SINE MIR 20 170 -92 266 344 61 0 chr6 4977760 4977891 -184301663 + MER20 DNA MER1_type 55 193 -26 291 302 128 23 chr6 4977966 4978138 -184301416 - MLT1L LTR MaLR -204 411 222 343 299 107 21 chr6 4979399 4979586 -184299968 + MIR SINE MIR 16 218 -44 30 27 0 0 chr6 4980011 4980048 -184299506 + AT_rich Low_complexity Low_complexity 1 37 0 1611 212 48 75 chr6 4980068 4980625 -184298929 - MER34 LTR ERV1 0 542 1 510 191 296 35 chr6 4981936 4982135 -184297419 + MLT1G1 LTR MaLR 340 595 0 402 281 60 6 chr6 4982524 4982691 -184296863 + L2 LINE L2 1986 2161 -1153 272 300 0 12 chr6 4982705 4982785 -184296769 + MER21B LTR ERV1 1 79 -784 1257 232 88 20 chr6 4982876 4983443 -184296111 + MER21B LTR ERV1 98 834 -97 361 385 78 19 chr6 4983447 4983860 -184295694 + L2 LINE L2 2334 2770 -544 342 190 25 13 chr6 4984193 4984272 -184295282 - MER96 DNA MER1_type? -90 85 6 407 131 131 164 chr6 4984989 4985081 -184294473 + MER5A DNA MER1_type 13 98 -91 665 172 0 8 chr6 4985081 4985203 -184294351 + FLAM_A SINE Alu 1 121 -12 407 131 131 164 chr6 4985203 4985293 -184294261 + MER5A DNA MER1_type 98 189 0 21 71 0 0 chr6 4986280 4986322 -184293232 + GC_rich Low_complexity Low_complexity 1 42 0 1428 189 23 49 chr6 4989076 4989173 -184290381 + MER58B DNA MER1_type 1 99 -2321 2358 105 3 6 chr6 4989173 4989487 -184290067 - AluSq SINE Alu 0 313 1 1428 189 23 49 chr6 4989487 4989739 -184289815 + MER58B DNA MER1_type 99 341 0 21 36 0 0 chr6 4990422 4990450 -184289104 + AT_rich Low_complexity Low_complexity 1 28 0 293 0 27 0 chr6 4991108 4991145 -184288409 + (CA)n Simple_repeat Simple_repeat 2 39 0 2170 104 0 27 chr6 4993522 4993819 -184285735 + AluSg SINE Alu 1 289 -21 1849 180 0 7 chr6 4995292 4995598 -184283956 + AluJo SINE Alu 1 304 -8 1415 150 42 0 chr6 4995930 4996217 -184283337 + L1MA4 LINE L1 5997 6295 -5 427 225 167 8 chr6 4996238 4996358 -184283196 + MER20 DNA MER1_type 50 188 -31 2397 145 13 3 chr6 4996360 4996752 -184282802 - MER57A LTR ERV1 0 403 8 2143 118 0 7 chr6 4996788 4997107 -184282447 + AluSx SINE Alu 1 317 0 615 225 13 13 chr6 4997112 4997263 -184282291 + L1MC4a LINE L1 7657 7807 -1 1912 167 10 0 chr6 4997304 4997598 -184281956 + AluJo SINE Alu 5 301 -11 263 310 80 37 chr6 4997675 4997862 -184281692 + MIR SINE MIR 16 210 -52 1577 155 0 0 chr6 4998101 4998346 -184281208 - MSTC LTR MaLR -2 426 182 498 103 0 0 chr6 4998361 4998429 -184281125 - AluJ/FRAM SINE Alu -27 285 218 1759 158 7 31 chr6 4998451 4998743 -184280811 - AluJo SINE Alu -27 285 1 834 143 7 7 chr6 4998748 4998895 -184280659 - MSTC LTR MaLR -281 147 1 640 184 8 16 chr6 4999090 4999215 -184280339 - FLAM_A SINE Alu -9 124 1 504 245 123 0 chr6 4999578 4999733 -184279821 + L1ME LINE L1 5566 5739 -431 1665 164 0 18 chr6 5000299 5000475 -184279079 - AluJb SINE Alu -16 296 125 360 43 0 0 chr6 5000475 5000521 -184279033 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 1665 164 0 18 chr6 5000521 5000618 -184278936 - AluJb SINE Alu -187 125 28 779 167 0 0 chr6 5000702 5000834 -184278720 - FLAM_C SINE Alu 0 133 2 386 232 104 16 chr6 5000836 5000961 -184278593 - MIR SINE MIR -112 150 15 463 304 87 11 chr6 5002472 5002656 -184276898 - MIR SINE MIR -6 256 59 217 227 0 0 chr6 5002761 5002805 -184276749 - MIR SINE MIR -114 94 51 1319 177 92 44 chr6 5002891 5003185 -184276369 - AluJo SINE Alu -4 308 1 2193 106 7 13 chr6 5004723 5005026 -184274528 - AluSg SINE Alu -7 303 3 2085 144 0 3 chr6 5005370 5005668 -184273886 - AluJb SINE Alu -15 297 1 194 257 9 64 chr6 5005859 5005968 -184273586 + L2 LINE L2 2426 2528 -786 241 279 25 0 chr6 5006199 5006278 -184273276 - MLT1H LTR MaLR 0 549 469 2276 94 0 3 chr6 5006623 5006933 -184272621 + AluSx SINE Alu 1 309 0 352 333 129 29 chr6 5007013 5007392 -184272162 + L2 LINE L2 2856 3272 0 2033 82 78 4 chr6 5008838 5009107 -184270447 + AluSg SINE Alu 1 289 -21 193 326 27 82 chr6 5009559 5009743 -184269811 - MER5B DNA MER1_type 0 178 5 360 222 25 0 chr6 5009810 5009891 -184269663 - MER5A DNA MER1_type -82 107 25 291 241 25 0 chr6 5011929 5012008 -184267546 - MER5A DNA MER1_type -100 89 9 390 255 221 7 chr6 5012550 5012699 -184266855 + L3 LINE CR1 1392 1572 -5 291 245 116 54 chr6 5012860 5013007 -184266547 + MIR3 SINE MIR 41 196 -12 252 237 96 74 chr6 5013335 5013470 -184266084 + L2 LINE L2 3133 3270 -2 1855 132 55 4 chr6 5014249 5014522 -184265032 + AluSg SINE Alu 5 291 -19 915 129 0 0 chr6 5014826 5014958 -184264596 - FLAM_A SINE Alu -1 132 1 814 255 45 52 chr6 5015250 5015517 -184264037 + MLT1J LTR MaLR 243 507 -4 1550 58 44 26 chr6 5015732 5015958 -184263596 + MER30 DNA MER1_type 1 230 0 796 273 124 12 chr6 5015990 5016393 -184263161 - L1ME4a LINE L1 -118 6003 5556 215 243 0 57 chr6 5017084 5017154 -184262400 + MIR SINE MIR 184 249 -13 2323 77 28 0 chr6 5018367 5018653 -184260901 + AluSc SINE Alu 1 294 -15 1024 160 0 0 chr6 5018825 5018975 -184260579 + FAM SINE Alu 12 161 -24 1968 137 0 27 chr6 5019188 5019509 -184260045 - AluSx SINE Alu 0 313 1 2076 147 3 10 chr6 5020597 5020911 -184258643 + AluSx SINE Alu 1 312 0 2051 122 21 7 chr6 5021000 5021287 -184258267 - AluSg SINE Alu -19 291 1 816 137 24 0 chr6 5021465 5021589 -184257965 - LTR12 LTR ERV1 -229 485 359 280 236 0 0 chr6 5021589 5021661 -184257893 - LTR30 LTR ERV1 -98 624 553 1478 135 23 23 chr6 5021662 5021964 -184257590 - LTR12 LTR ERV1 -406 2032 55 278 211 0 0 chr6 5021964 5022016 -184257538 - LTR30 LTR ERV1 -670 52 1 402 191 0 0 chr6 5025405 5025473 -184254081 - AluJ/FLAM SINE Alu -243 69 2 200 289 24 24 chr6 5025882 5025965 -184253589 - MER5B DNA MER1_type -74 104 22 200 261 118 67 chr6 5025982 5026101 -184253453 + L2 LINE L2 3102 3226 -46 190 299 26 26 chr6 5026255 5026332 -184253222 + L2 LINE L2 2678 2754 -560 2461 159 30 13 chr6 5027578 5028049 -184251505 + L1MB7 LINE L1 5645 6123 -61 2154 119 14 0 chr6 5028049 5028342 -184251212 - AluSx SINE Alu -15 297 1 993 113 0 0 chr6 5028344 5028477 -184251077 - AluJb SINE Alu -179 133 1 262 143 79 0 chr6 5028477 5028540 -184251014 + L1MB8 LINE L1 6111 6178 0 1005 186 64 25 chr6 5028613 5028893 -184250661 + MER33 DNA MER1_type 31 321 -3 691 217 7 0 chr6 5028999 5029151 -184250403 - L1MD2 LINE L1 -15 6344 6192 2093 200 47 12 chr6 5030335 5030821 -184248733 - MLT1D LTR MaLR 0 505 3 827 173 0 0 chr6 5032510 5032643 -184246911 + FLAM_C SINE Alu 1 133 0 228 198 151 47 chr6 5032893 5032979 -184246575 + L1ME LINE L1 5801 5895 -226 214 336 124 46 chr6 5033288 5033505 -184246049 - MIR SINE MIR -11 251 18 195 42 0 0 chr6 5033506 5033530 -184246024 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 497 270 68 0 chr6 5034565 5034694 -184244860 - MER5B DNA MER1_type 0 178 34 2893 174 56 18 chr6 5034694 5035298 -184244256 - L1MB5 LINE L1 -6 6168 5542 497 270 68 0 chr6 5035298 5035331 -184244223 - MER5B DNA MER1_type -144 34 5 565 221 164 64 chr6 5035385 5035856 -184243698 + L1MC5 LINE L1 7398 7915 -46 2874 173 50 4 chr6 5036835 5037380 -184242174 - L1MB3 LINE L1 -10 6173 5604 411 286 160 9 chr6 5037487 5037700 -184241854 + MIR SINE MIR 6 250 -12 2916 182 18 2 chr6 5037920 5038470 -184241084 - L1MB7 LINE L1 -9 6175 5617 2055 149 0 9 chr6 5039294 5039609 -184239945 + AluJb SINE Alu 1 312 0 284 321 51 36 chr6 5040098 5040294 -184239260 - MIR SINE MIR 0 262 64 1600 152 57 4 chr6 5040626 5040889 -184238665 + MER57A LTR ERV1 1 277 -126 1001 138 33 0 chr6 5040929 5041081 -184238473 - AluJb SINE Alu -11 301 145 1552 142 24 0 chr6 5041087 5041334 -184238220 + AluJb SINE Alu 44 296 -16 696 202 8 0 chr6 5041335 5041464 -184238090 + MER57A LTR ERV1 274 403 0 340 125 0 31 chr6 5041825 5041889 -184237665 + L1MB4 LINE L1 6119 6180 0 307 238 89 0 chr6 5042388 5042489 -184237065 + MIR3 SINE MIR 67 176 -32 189 337 22 11 chr6 5042659 5042751 -184236803 - MIR3 SINE MIR -12 196 104 264 291 93 0 chr6 5042941 5043027 -184236527 - MIR3 SINE MIR -52 156 63 1135 218 201 43 chr6 5043193 5043661 -184235893 + MLT1G LTR MaLR 36 577 -13 2385 67 40 0 chr6 5045448 5045747 -184233807 + AluY SINE Alu 1 311 0 285 288 0 0 chr6 5046462 5046535 -184233019 - MIR SINE MIR -86 176 104 213 39 0 0 chr6 5046972 5046998 -184232556 + (CATTC)n Simple_repeat Simple_repeat 1 26 0 212 242 16 121 chr6 5047466 5047590 -184231964 - MIR SINE MIR -108 154 44 302 310 37 43 chr6 5047681 5047868 -184231686 + MLT1L LTR MaLR 105 290 -325 198 0 0 0 chr6 5049755 5049777 -184229777 + (TC)n Simple_repeat Simple_repeat 2 23 0 258 226 70 50 chr6 5050487 5050618 -184228936 - MIR SINE MIR -63 145 13 474 228 174 11 chr6 5051486 5051670 -184227884 + MIR SINE MIR 47 260 -2 2340 89 0 13 chr6 5052162 5052475 -184227079 - AluSc SINE Alu 0 309 1 430 300 80 34 chr6 5052714 5052951 -184226603 + MIR SINE MIR 2 249 -13 271 302 70 31 chr6 5053031 5053160 -184226394 + L2 LINE L2 3179 3312 -1 348 208 56 83 chr6 5053189 5053333 -184226221 - MIR3 SINE MIR -2 206 67 1798 150 25 0 chr6 5054196 5054482 -184225072 - AluSx SINE Alu -18 294 2 257 234 26 13 chr6 5054607 5054684 -184224870 + MIR SINE MIR 83 160 -102 2412 66 0 25 chr6 5055627 5055946 -184223608 + AluY SINE Alu 1 311 0 197 253 121 24 chr6 5055950 5056033 -184223521 - MIR SINE MIR -88 120 30 2083 123 7 3 chr6 5056171 5056473 -184223081 - AluSx SINE Alu -9 303 1 189 195 0 0 chr6 5059144 5059185 -184220369 + GA-rich Low_complexity Low_complexity 4 44 0 330 298 8 24 chr6 5059204 5059328 -184220226 + (TATG)n Simple_repeat Simple_repeat 2 123 0 2062 134 17 3 chr6 5059566 5059865 -184219689 - AluJo SINE Alu -9 303 1 267 255 37 85 chr6 5060436 5060624 -184218930 - L2 LINE L2 -1260 2054 1876 2003 91 53 138 chr6 5061449 5061846 -184217708 + THE1B LTR MaLR 2 364 0 29 47 0 0 chr6 5062233 5062276 -184217278 + AT_rich Low_complexity Low_complexity 1 43 0 204 261 0 0 chr6 5063286 5063332 -184216222 + MER5B DNA MER1_type 108 153 -25 303 136 0 0 chr6 5063566 5063625 -184215929 + (GA)n Simple_repeat Simple_repeat 2 60 0 1642 289 77 24 chr6 5063938 5064713 -184214841 - L1M LINE L1 -754 5392 4587 2078 102 53 0 chr6 5064713 5064998 -184214556 - AluSx SINE Alu -12 300 1 1642 289 77 24 chr6 5064998 5065092 -184214462 - L1M LINE L1 -1559 4587 4499 * 1884 251 93 29 chr6 5065090 5065775 -184213779 + L1ME3A LINE L1 5375 6103 -67 2367 106 0 0 chr6 5065778 5066080 -184213474 + AluSx SINE Alu 1 302 -10 2315 112 0 6 chr6 5066621 5066935 -184212619 - AluSx SINE Alu 0 312 1 24 91 0 0 chr6 5067106 5067172 -184212382 + AT_rich Low_complexity Low_complexity 1 66 0 183 203 95 14 chr6 5067677 5067751 -184211803 - MIR SINE MIR -71 191 112 442 242 11 0 chr6 5068019 5068110 -184211444 - AluJ/FLAM SINE Alu -219 93 2 1938 237 124 61 chr6 5069023 5069977 -184209577 + L1MC4 LINE L1 6891 7904 -138 234 176 59 0 chr6 5070043 5070111 -184209443 + L1MC4 LINE L1 7931 8002 -40 697 197 0 23 chr6 5070188 5070320 -184209234 - FLAM_A SINE Alu -4 129 1 307 244 122 0 chr6 5070594 5070676 -184208878 + MER82 DNA MER2_type 556 647 -6 252 0 0 0 chr6 5071575 5071603 -184207951 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 930 70 0 0 chr6 5071606 5071720 -184207834 - AluSg/x SINE Alu -25 285 172 475 265 111 17 chr6 5071840 5072021 -184207533 + L1ME LINE L1 5585 5782 -339 1039 245 119 14 chr6 5076690 5077160 -184202394 + MLT1G LTR MaLR 1 548 -42 2375 102 0 0 chr6 5077160 5077455 -184202099 - AluSg SINE Alu -15 295 1 431 300 50 7 chr6 5079112 5079252 -184200302 + L2 LINE L2 3119 3264 -8 429 205 32 3 chr6 5079259 5079430 -184200124 - MARNA DNA Mariner -197 389 161 21 0 0 0 chr6 5079539 5079560 -184199994 + AT_rich Low_complexity Low_complexity 1 21 0 2387 80 30 0 chr6 5079624 5079926 -184199628 + AluSx SINE Alu 1 311 -1 297 125 0 0 chr6 5080135 5080191 -184199363 + (A)n Simple_repeat Simple_repeat 1 56 0 283 127 0 18 chr6 5080245 5080300 -184199254 - L1MB4 LINE L1 0 6180 6127 3231 151 21 36 chr6 5080321 5080937 -184198617 - L1MB3 LINE L1 0 6183 5577 388 296 161 23 chr6 5082848 5083108 -184196446 + L2 LINE L2 2154 2449 -865 1265 155 33 0 chr6 5084928 5085141 -184194413 + L1MA8 LINE L1 6062 6281 -10 21 36 0 0 chr6 5085634 5085662 -184193892 + AT_rich Low_complexity Low_complexity 1 28 0 321 273 152 0 chr6 5085798 5085897 -184193657 - L2 LINE L2 0 3272 3159 207 100 0 0 chr6 5086296 5086326 -184193228 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 397 243 135 9 chr6 5086721 5086832 -184192722 - MIR SINE MIR -130 132 8 244 232 73 66 chr6 5087545 5087696 -184191858 + L1PA6 LINE L1 4897 5048 -1098 2278 112 0 0 chr6 5087795 5088091 -184191463 + AluSx SINE Alu 2 297 -15 2375 172 103 4 chr6 5088370 5088859 -184190695 + L1PA6 LINE L1 5603 6154 0 324 269 15 75 chr6 5088859 5088993 -184190561 + L1MC4a LINE L1 5811 5936 -1872 1513 157 71 31 chr6 5089159 5089282 -184190272 + AluJb SINE Alu 1 118 -194 204 97 0 0 chr6 5089282 5089313 -184190241 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1513 157 71 31 chr6 5089313 5089483 -184190071 + AluJb SINE Alu 118 306 -6 522 251 199 9 chr6 5089646 5089857 -184189697 + MIR SINE MIR 12 262 0 1835 137 18 7 chr6 5089868 5090145 -184189409 - AluJb SINE Alu -24 288 9 312 328 12 12 chr6 5090350 5090521 -184189033 + (TTAGGG)n Simple_repeat Simple_repeat 3 173 0 25 51 0 0 chr6 5091533 5091572 -184187982 + AT_rich Low_complexity Low_complexity 1 39 0 691 235 133 0 chr6 5091675 5091841 -184187713 + Tigger3(Golem) DNA MER2_type 1 188 -2841 228 313 137 16 chr6 5092107 5092356 -184187198 + L1ME LINE L1 5617 5895 -226 1243 244 217 6 chr6 5092725 5093200 -184186354 + L1MC4 LINE L1 7154 7728 -314 2227 101 7 0 chr6 5093836 5094132 -184185422 + AluSx SINE Alu 1 298 -14 378 93 0 0 chr6 5095115 5095169 -184184385 - MLT2D LTR ERVL 0 414 361 210 273 91 0 chr6 5095595 5095661 -184183893 + MIR SINE MIR 119 190 -72 1148 137 6 0 chr6 5095819 5095980 -184183574 - FRAM SINE Alu -4 162 1 269 303 18 55 chr6 5096050 5096215 -184183339 - Charlie7 DNA MER1_type 0 2612 2454 1931 115 3 78 chr6 5096421 5096752 -184182802 + AluSx SINE Alu 1 306 -6 343 235 12 71 chr6 5096887 5096972 -184182582 + L2 LINE L2 3132 3211 -61 413 301 92 5 chr6 5097051 5097257 -184182297 - MIR SINE MIR -3 259 36 363 273 56 37 chr6 5097496 5097657 -184181897 + MIR SINE MIR 13 176 -86 2287 100 0 10 chr6 5098484 5098795 -184180759 + AluSg1 SINE Alu 1 308 -1 2099 94 3 82 chr6 5098983 5099314 -184180240 + AluSq SINE Alu 2 306 -7 3779 147 75 22 chr6 5099948 5100641 -184178913 + L1MB8 LINE L1 5444 6173 -5 629 224 141 0 chr6 5101809 5101965 -184177589 - MER5B DNA MER1_type 0 178 1 23 54 0 0 chr6 5102089 5102126 -184177428 + AT_rich Low_complexity Low_complexity 1 37 0 374 233 20 130 chr6 5102933 5103079 -184176475 + MIR SINE MIR 20 149 -59 459 322 93 14 chr6 5105055 5105269 -184174285 - MIR SINE MIR -13 249 19 384 211 44 26 chr6 5105506 5105620 -184173934 + MER4C LTR ERV1 1 116 -349 810 220 39 35 chr6 5105639 5105912 -184173642 + MER4C LTR ERV1 278 465 0 351 210 210 14 chr6 5107298 5107436 -184172118 - MIR3 SINE MIR -7 201 37 267 313 111 14 chr6 5107796 5107940 -184171614 + MIR SINE MIR 77 234 -28 218 314 110 25 chr6 5108010 5108128 -184171426 - MIR3 SINE MIR -68 140 13 2015 136 0 10 chr6 5108864 5109158 -184170396 - AluSx SINE Alu -5 307 17 363 303 18 9 chr6 5110058 5110167 -184169387 - MIR3 SINE MIR -8 200 91 2641 153 27 0 chr6 5110289 5110735 -184168819 - L1MB2 LINE L1 -3 6168 5711 658 275 113 17 chr6 5111585 5111924 -184167630 + L1ME LINE L1 5388 5780 -341 2127 115 7 0 chr6 5111954 5112241 -184167313 + AluSq SINE Alu 1 289 -24 2292 89 3 16 chr6 5112243 5112559 -184166995 + AluSx SINE Alu 1 312 0 867 293 168 55 chr6 5112708 5113318 -184166236 - L1MC4a LINE L1 -376 5802 5271 2332 77 28 0 chr6 5113666 5113953 -184165601 - AluSp SINE Alu -18 295 1 247 356 46 31 chr6 5114355 5114678 -184164876 - L2 LINE L2 -954 2360 2033 5168 69 15 14 chr6 5114773 5115427 -184164127 + L1PA8 LINE L1 5514 6168 -4 328 259 55 82 chr6 5115508 5115557 -184163997 + L1M4 LINE L1 2879 2928 -3218 2056 141 0 3 chr6 5115557 5115854 -184163700 - AluSx SINE Alu -16 296 1 328 259 55 82 chr6 5115854 5115995 -184163559 + L1M4 LINE L1 2928 3065 -3081 2560 55 0 13 chr6 5115995 5116306 -184163248 + AluY SINE Alu 1 307 -4 328 259 55 82 chr6 5116306 5116334 -184163220 + L1M4 LINE L1 3065 3092 -3054 22 0 0 0 chr6 5117807 5117829 -184161725 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 5117861 5117882 -184161672 + AT_rich Low_complexity Low_complexity 1 21 0 338 113 9 12 chr6 5118271 5118502 -184161052 + AluSq SINE Alu 1 300 0 761 151 17 0 chr6 5120932 5121051 -184158503 - FLAM_A SINE Alu -12 121 1 21 0 0 0 chr6 5121402 5121423 -184158131 + AT_rich Low_complexity Low_complexity 1 21 0 209 289 134 31 chr6 5121780 5121877 -184157677 - L2 LINE L2 -188 3084 2978 1094 127 6 35 chr6 5122429 5122602 -184156952 - AluSg/x SINE Alu -22 290 123 2384 99 0 0 chr6 5123459 5123762 -184155792 + AluSx SINE Alu 1 303 -9 1814 145 7 37 chr6 5123942 5124238 -184155316 + AluJo SINE Alu 1 287 -25 3617 99 73 4 chr6 5124405 5124898 -184154656 + MER1A DNA MER1_type 1 527 0 451 315 62 6 chr6 5128289 5128467 -184151087 + MIR SINE MIR 61 248 -14 207 339 66 25 chr6 5128489 5128610 -184150944 + MIR SINE MIR 131 256 -6 583 244 0 8 chr6 5128912 5129035 -184150519 + L2 LINE L2 3192 3313 0 2349 84 0 7 chr6 5129351 5129648 -184149906 - AluSc SINE Alu -14 295 1 1986 119 7 3 chr6 5129714 5130000 -184149554 + AluSq SINE Alu 1 287 -26 2842 10 0 0 chr6 5130043 5130349 -184149205 - AluYb8 SINE Alu -12 306 1 23 54 0 0 chr6 5130987 5131024 -184148530 + AT_rich Low_complexity Low_complexity 1 37 0 2058 162 40 0 chr6 5131317 5131668 -184147886 + MER47A DNA MER2_type 2 366 0 216 0 0 0 chr6 5132366 5132390 -184147164 + (A)n Simple_repeat Simple_repeat 1 24 0 459 0 0 0 chr6 5132390 5132441 -184147113 + (TA)n Simple_repeat Simple_repeat 1 51 0 201 289 84 12 chr6 5132677 5132760 -184146794 - L2 LINE L2 -38 3275 3187 284 333 81 43 chr6 5133344 5133554 -184146000 - L2 LINE L2 -212 3060 2843 186 313 70 26 chr6 5133643 5133758 -184145796 + MIR SINE MIR 15 134 -128 248 333 61 12 chr6 5134074 5134239 -184145315 - L2 LINE L2 -1015 2299 2127 201 318 34 62 chr6 5135463 5135642 -184143912 + L2 LINE L2 2477 2650 -664 365 288 70 109 chr6 5135885 5136198 -184143356 + L2 LINE L2 2967 3267 -5 31 82 0 0 chr6 5137443 5137516 -184142038 + AT_rich Low_complexity Low_complexity 1 73 0 2924 113 57 2 chr6 5138612 5139018 -184140536 - MSTA LTR MaLR 0 428 1 286 259 82 0 chr6 5139554 5139639 -184139915 + MIR SINE MIR 32 123 -85 255 261 85 54 chr6 5139706 5139836 -184139718 + L2 LINE L2 2862 2995 -318 274 298 145 21 chr6 5140029 5140264 -184139290 + MLT1J LTR MaLR 242 505 -6 8844 103 52 2 chr6 5140586 5141810 -184137744 + HSMAR1 DNA Mariner 1 1285 -2 188 219 146 0 chr6 5141815 5141856 -184137698 - L2 LINE L2 -42 3230 3184 1445 208 153 2 chr6 5142463 5142887 -184136667 + Charlie1b DNA MER1_type 34 521 -2 733 184 247 0 chr6 5142988 5143162 -184136392 - MER20 DNA MER1_type -1 218 2 282 290 0 0 chr6 5143230 5143292 -184136262 - MIR SINE MIR -12 250 189 348 215 0 0 chr6 5143309 5143374 -184136180 + MER20 DNA MER1_type 154 218 -1 2461 96 0 0 chr6 5143484 5143797 -184135757 + AluSq SINE Alu 1 313 0 299 100 0 0 chr6 5143811 5143851 -184135703 - Charlie1 DNA MER1_type -2 2759 2720 322 217 126 51 chr6 5143852 5144010 -184135544 - MIR3 SINE MIR -61 147 1 * 420 317 108 67 chr6 5144010 5144609 -184134945 + L2 LINE L2 2304 2929 -385 2304 106 59 12 chr6 5144799 5145121 -184134433 + MER1B DNA MER1_type 1 337 0 336 352 87 27 chr6 5145254 5145473 -184134081 - L2 LINE L2 -222 3050 2819 517 283 62 6 chr6 5145615 5145792 -184133762 + MIR SINE MIR 76 262 0 445 230 30 0 chr6 5146263 5146363 -184133191 - MIR3 SINE MIR -15 193 91 28 48 0 0 chr6 5147867 5147909 -184131645 + GC_rich Low_complexity Low_complexity 1 42 0 2407 84 0 3 chr6 5149547 5149855 -184129699 - AluSx SINE Alu -5 307 1 1961 119 0 110 chr6 5151207 5151543 -184128011 + AluJb SINE Alu 2 300 -2 186 181 153 83 chr6 5151616 5151688 -184127866 - MIR3 SINE MIR -13 195 119 536 111 0 0 chr6 5151757 5151838 -184127716 - AluSq SINE Alu 0 313 233 1096 90 0 7 chr6 5151838 5151983 -184127571 - AluSq SINE Alu -169 144 1 1340 221 34 37 chr6 5152081 5152375 -184127179 - AluJb SINE Alu -9 293 1 393 184 26 0 chr6 5153005 5153081 -184126473 + MADE1 DNA Mariner 1 78 -2 268 214 119 127 chr6 5153135 5153261 -184126293 + MER5B DNA MER1_type 54 178 0 183 231 22 110 chr6 5153631 5153662 -184125892 - MIR SINE MIR -111 151 119 917 143 0 15 chr6 5153662 5153795 -184125759 + FLAM_C SINE Alu 3 133 0 183 231 22 110 chr6 5153795 5153854 -184125700 - MIR SINE MIR -143 119 69 2272 86 7 13 chr6 5154745 5155047 -184124507 + AluY SINE Alu 1 300 -11 8208 33 1 2 chr6 5155047 5156224 -184123330 - L1PA5 LINE L1 -569 5586 4409 4455 47 58 0 chr6 5156224 5156747 -184122807 + L1PA5 LINE L1 5585 6152 -2 328 301 164 35 chr6 5157941 5158267 -184121287 + L2 LINE L2 2717 3096 -176 362 333 98 50 chr6 5158302 5158719 -184120835 - MLT1K LTR MaLR -23 565 129 199 319 35 64 chr6 5158772 5158837 -184120717 + L2 LINE L2 3161 3226 -87 2144 76 0 0 chr6 5158837 5159099 -184120455 - AluSg SINE Alu -10 300 39 199 319 35 64 chr6 5159099 5159174 -184120380 + L2 LINE L2 3226 3297 -16 925 186 164 9 chr6 5159232 5159452 -184120102 + Tigger7 DNA MER2_type 8 261 -472 530 104 7 153 chr6 5159479 5159623 -184119931 + Tigger7 DNA MER2_type 2211 2333 -154 5997 151 37 16 chr6 5159801 5161222 -184118332 - L1MA4 LINE L1 -2 6298 4843 1053 149 24 53 chr6 5161222 5161430 -184118124 + Tigger7 DNA MER2_type 2286 2487 0 649 241 195 67 chr6 5161461 5161985 -184117569 + MLT1L LTR MaLR 3 593 -22 1843 137 7 28 chr6 5161995 5162280 -184117274 - AluJo SINE Alu -20 292 14 475 216 171 0 chr6 5162735 5162846 -184116708 + L2 LINE L2 3143 3272 0 575 241 15 30 chr6 5163648 5163781 -184115773 + MER94 DNA DNA 4 134 0 180 278 98 75 chr6 5165421 5165554 -184114000 + MIR SINE MIR 50 185 -77 2320 97 7 0 chr6 5166372 5166681 -184112873 + AluY SINE Alu 1 311 0 239 211 19 0 chr6 5166826 5166878 -184112676 + (TA)n Simple_repeat Simple_repeat 2 54 0 1644 198 92 24 chr6 5166893 5167272 -184112282 - MLT2B1 LTR ERVL -115 405 1 191 359 162 7 chr6 5167828 5167970 -184111584 + L2 LINE L2 2898 3061 -252 25 31 0 0 chr6 5168220 5168252 -184111302 + AT_rich Low_complexity Low_complexity 1 32 0 1332 124 14 18 chr6 5168718 5168935 -184110619 - L1MB3 LINE L1 -2 6181 5966 2078 124 0 45 chr6 5170231 5170377 -184109177 + AluSx SINE Alu 1 127 -185 2239 117 0 3 chr6 5170377 5170676 -184108878 + AluSp SINE Alu 11 308 -5 2078 124 0 45 chr6 5170676 5170843 -184108711 + AluSx SINE Alu 127 300 -12 857 274 115 32 chr6 5171083 5171517 -184108037 - L1MB3 LINE L1 -2032 5776 5307 1827 163 14 0 chr6 5173541 5173835 -184105719 - AluJb SINE Alu -14 298 1 365 241 111 19 chr6 5175883 5175991 -184103563 - L2 LINE L2 -3 3310 3193 4452 97 45 34 chr6 5176580 5177207 -184102347 - MER51A LTR ERV1 0 634 1 22 35 0 0 chr6 5177297 5177326 -184102228 + AT_rich Low_complexity Low_complexity 1 29 0 1720 167 14 10 chr6 5178003 5178296 -184101258 - AluJb SINE Alu -18 294 1 780 211 83 6 chr6 5178897 5179053 -184100501 + FRAM SINE Alu 1 166 -10 1252 305 88 57 chr6 5179537 5180603 -184098951 - L2 LINE L2 -567 2747 1649 186 43 0 0 chr6 5181264 5181287 -184098267 + (CA)n Simple_repeat Simple_repeat 2 24 0 2869 157 81 13 chr6 5181618 5182139 -184097415 - MER21A LTR ERV1 0 931 376 946 147 187 13 chr6 5182144 5182369 -184097185 - MER21A LTR ERV1 -667 264 1 415 184 112 0 chr6 5183250 5183348 -184096206 - MIR SINE MIR -17 245 137 4170 149 10 18 chr6 5183358 5183406 -184096148 - L1MB3 LINE L1 -2 6181 6134 2582 68 0 0 chr6 5183406 5183717 -184095837 - AluY SINE Alu 0 311 1 4170 149 10 18 chr6 5183717 5184347 -184095207 - L1MB3 LINE L1 -49 6134 5508 247 188 197 51 chr6 5184349 5184466 -184095088 - MIR SINE MIR -97 165 32 2348 105 0 0 chr6 5184642 5184948 -184094606 + AluSq SINE Alu 1 306 -7 201 74 0 0 chr6 5184956 5184983 -184094571 + (CAA)n Simple_repeat Simple_repeat 2 28 0 707 274 0 11 chr6 5185810 5185989 -184093565 - MER5B DNA MER1_type 0 178 2 750 112 0 0 chr6 5186062 5186169 -184093385 + AluSg/x SINE Alu 204 310 0 1800 84 0 16 chr6 5186862 5187111 -184092443 - L1PA6 LINE L1 -55 6099 5855 437 183 104 0 chr6 5187114 5187220 -184092334 + MLT2B2 LTR ERVL 351 465 -50 1295 132 51 180 chr6 5187938 5188293 -184091261 - AluJo SINE Alu -3 309 1 1050 158 0 0 chr6 5188584 5188742 -184090812 + FRAM SINE Alu 4 161 -15 483 18 0 0 chr6 5189068 5189124 -184090430 + (CA)n Simple_repeat Simple_repeat 1 56 0 239 232 171 0 chr6 5189537 5189619 -184089935 - MER5A DNA MER1_type -77 112 17 834 203 68 5 chr6 5189775 5189967 -184089587 - MIR SINE MIR -26 236 33 521 289 114 9 chr6 5190233 5190444 -184089110 - MIR SINE MIR -4 258 26 918 279 41 16 chr6 5191518 5191837 -184087717 - L1ME4a LINE L1 -259 5862 5536 447 158 12 12 chr6 5192365 5192447 -184087107 + MER117 DNA MER1_type 55 136 -61 339 280 88 40 chr6 5192853 5192978 -184086576 - MIR SINE MIR -58 150 20 259 345 236 3 chr6 5195415 5195716 -184083838 - L2 LINE L2 -318 2954 2586 406 217 61 20 chr6 5195723 5195927 -184083627 - MER5C DNA MER1_type -2 322 52 1988 190 40 3 chr6 5196029 5196381 -184083173 - MLT1A1 LTR MaLR 0 365 1 197 394 10 20 chr6 5196387 5196486 -184083068 - L2 LINE L2 -38 3234 3137 * 253 326 0 10 chr6 5196482 5196580 -184082974 - L2 LINE L2 -756 2558 2462 825 280 73 103 chr6 5196876 5197818 -184081736 + L1MC4a LINE L1 4390 5303 -843 281 248 132 16 chr6 5197853 5197982 -184081572 + L1MC4a LINE L1 5333 5476 -2332 213 262 139 66 chr6 5198026 5198148 -184081406 + L2 LINE L2 3183 3313 0 712 322 47 13 chr6 5198197 5198514 -184081040 + L1MC4a LINE L1 5566 5893 -1915 22 35 0 0 chr6 5199523 5199552 -184080002 + AT_rich Low_complexity Low_complexity 1 29 0 316 274 14 0 chr6 5200019 5200092 -184079462 - L2 LINE L2 -25 3247 3174 228 67 0 0 chr6 5200293 5200323 -184079231 + (GGGAGA)n Simple_repeat Simple_repeat 1 30 0 438 217 30 136 chr6 5201060 5201120 -184078434 - MER5B DNA MER1_type -1 177 112 306 0 0 0 chr6 5201120 5201154 -184078400 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 438 217 30 136 chr6 5201154 5201291 -184078263 - MER5B DNA MER1_type -66 112 1 437 313 108 35 chr6 5201291 5201606 -184077948 - L2 LINE L2 -495 2819 2482 378 61 0 0 chr6 5202993 5203042 -184076512 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 2907 221 129 53 chr6 5203672 5204712 -184074842 + L1MCb LINE L1 3 1121 -4924 2156 165 50 81 chr6 5204727 5204775 -184074779 - LTR58 LTR ERV1 -2 677 629 1834 173 3 3 chr6 5204775 5205076 -184074478 + AluJb SINE Alu 1 301 -11 2156 165 50 81 chr6 5205076 5205355 -184074199 - LTR58 LTR ERV1 -50 629 343 2344 81 0 37 chr6 5205355 5205677 -184073877 + AluSg SINE Alu 1 310 0 2156 165 50 81 chr6 5205677 5205795 -184073759 - LTR58 LTR ERV1 -336 343 248 1709 116 455 40 chr6 5205795 5206243 -184073311 - MER51A LTR ERV1 0 634 1 2156 165 50 81 chr6 5206243 5206339 -184073215 - LTR58 LTR ERV1 -431 248 151 4387 147 14 1 chr6 5206340 5207042 -184072512 + MER50 LTR ERV1 1 711 -23 394 147 44 0 chr6 5207048 5207116 -184072438 - LTR58 LTR ERV1 -534 145 75 804 186 14 54 chr6 5207118 5207349 -184072205 + MST-int LTR MaLR 382 667 -704 1251 213 20 20 chr6 5207989 5208242 -184071312 - MLT1A1 LTR MaLR -4 361 109 219 287 69 23 chr6 5209299 5209386 -184070168 - L2 LINE L2 -1 3271 3181 272 226 118 29 chr6 5209446 5209548 -184070006 + L1ME LINE L1 5726 5836 -285 3061 132 40 6 chr6 5211022 5211492 -184068062 + LTR19A LTR ERV1 1 486 0 207 0 0 0 chr6 5211720 5211743 -184067811 + (T)n Simple_repeat Simple_repeat 1 23 0 258 275 141 34 chr6 5213100 5213408 -184066146 + L1MC/D LINE L1 5328 5660 -461 2769 102 8 6 chr6 5214633 5214996 -184064558 + THE1B LTR MaLR 1 364 0 198 245 142 38 chr6 5215737 5215843 -184063711 + MIR SINE MIR 20 136 -72 1744 272 139 25 chr6 5216712 5217418 -184062136 - MER21B LTR ERV1 -57 806 21 21 36 0 0 chr6 5217508 5217536 -184062018 + AT_rich Low_complexity Low_complexity 1 28 0 1755 184 3 0 chr6 5218100 5218399 -184061155 + AluJb SINE Alu 1 300 -12 541 272 29 59 chr6 5219219 5219458 -184060096 - MIR SINE MIR -12 250 19 806 279 71 16 chr6 5221515 5221837 -184057717 + L1MC4a LINE L1 5502 5841 -1967 23 0 0 0 chr6 5223757 5223780 -184055774 + AT_rich Low_complexity Low_complexity 1 23 0 1853 44 48 24 chr6 5223780 5224030 -184055524 - L1MA1 LINE L1 0 6302 6047 325 307 90 33 chr6 5224077 5224409 -184055145 - L1M4 LINE L1 -914 5232 4882 293 138 0 17 chr6 5224422 5224480 -184055074 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 1537 209 93 34 chr6 5226627 5226707 -184052847 - MER95 LTR ERV 0 431 357 1743 168 7 26 chr6 5226707 5227011 -184052543 - AluJo SINE Alu -14 298 1 1537 209 93 34 chr6 5227011 5227337 -184052217 - MER95 LTR ERV -74 357 1 2230 60 0 8 chr6 5228142 5228410 -184051144 + AluSg SINE Alu 1 266 -44 432 0 0 0 chr6 5228465 5228513 -184051041 + (TA)n Simple_repeat Simple_repeat 2 49 0 189 0 0 0 chr6 5228513 5228534 -184051020 + (T)n Simple_repeat Simple_repeat 1 21 0 2218 132 0 0 chr6 5228784 5229095 -184050459 - AluSx SINE Alu -1 311 1 250 303 45 0 chr6 5229282 5229371 -184050183 - MIR3 SINE MIR -6 202 110 656 271 105 32 chr6 5229408 5229685 -184049869 + Tigger8 DNA MER2_type 8 304 -362 2302 84 3 0 chr6 5229767 5230054 -184049500 + AluSp SINE Alu 21 308 -5 2199 99 0 0 chr6 5230477 5230788 -184048766 - AluSq SINE Alu 0 311 1 2142 143 0 10 chr6 5232054 5232368 -184047186 - AluSx SINE Alu -1 311 1 302 264 23 23 chr6 5233377 5233464 -184046090 + MIR3 SINE MIR 98 184 -24 265 265 43 8 chr6 5233873 5233990 -184045564 - L1MC4 LINE L1 -1 8041 7921 2225 217 79 72 chr6 5234126 5234188 -184045366 - L1ME2 LINE L1 0 6164 6104 2099 129 0 7 chr6 5234188 5234490 -184045064 - AluSx SINE Alu -12 300 1 2225 217 79 72 chr6 5234490 5234781 -184044773 - L1ME2 LINE L1 -60 6104 5817 186 43 0 0 chr6 5234781 5234804 -184044750 + (TG)n Simple_repeat Simple_repeat 2 24 0 2225 217 79 72 chr6 5234804 5235639 -184043915 - L1ME2 LINE L1 -347 5817 4959 212 57 0 29 chr6 5235758 5235793 -184043761 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 202 337 0 12 chr6 5235810 5235893 -184043661 - L2 LINE L2 -67 3246 3165 2395 227 38 24 chr6 5235971 5236716 -184042838 + L1M4 LINE L1 3850 4604 -1542 259 243 0 0 chr6 5236730 5236800 -184042754 + Charlie1 DNA MER1_type 1569 1638 -1123 1939 175 72 30 chr6 5236843 5237340 -184042214 - L1MC3 LINE L1 -86 7699 7182 1072 143 0 34 chr6 5237409 5237584 -184041970 - AluJo SINE Alu -143 169 1 951 282 33 3 chr6 5237604 5237966 -184041588 + L1M4 LINE L1 4631 5003 -1143 784 163 0 7 chr6 5237994 5238147 -184041407 + L1MD1 LINE L1 6089 6240 -2 1416 114 35 26 chr6 5239300 5239528 -184040026 - MER30 DNA MER1_type 0 230 1 218 320 72 39 chr6 5239774 5239955 -184039599 + MIR3 SINE MIR 15 201 -7 200 167 21 0 chr6 5239994 5240042 -184039512 + CT-rich Low_complexity Low_complexity 4 52 0 4974 153 57 24 chr6 5240056 5241117 -184038437 - L1MA6 LINE L1 0 6300 5205 2555 57 0 0 chr6 5241788 5242089 -184037465 - AluY SINE Alu -10 301 1 652 264 56 0 chr6 5242095 5242273 -184037281 - MER5A DNA MER1_type -1 188 1 25 51 0 0 chr6 5242281 5242320 -184037234 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr6 5242363 5242390 -184037164 + AT_rich Low_complexity Low_complexity 1 27 0 2082 102 54 7 chr6 5242639 5242933 -184036621 - AluSg SINE Alu -2 308 1 255 103 0 0 chr6 5242978 5243017 -184036537 + (CA)n Simple_repeat Simple_repeat 1 39 0 2833 196 42 24 chr6 5243150 5243443 -184036111 - MER82 DNA MER2_type -12 641 355 1988 128 0 7 chr6 5243443 5243725 -184035829 + AluSx SINE Alu 1 280 -32 279 39 20 39 chr6 5243729 5243780 -184035774 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2833 196 42 24 chr6 5243780 5244104 -184035450 - MER82 DNA MER2_type -300 353 8 184 286 0 0 chr6 5245027 5245069 -184034485 + MIR SINE MIR 35 76 -186 23 0 0 0 chr6 5245462 5245485 -184034069 + AT_rich Low_complexity Low_complexity 1 23 0 2187 116 0 3 chr6 5246307 5246617 -184032937 - AluSx SINE Alu -3 309 1 185 62 0 31 chr6 5247553 5247585 -184031969 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 203 333 33 17 chr6 5247654 5247714 -184031840 - L2 LINE L2 -93 3179 3119 1306 220 114 22 chr6 5248273 5248824 -184030730 - L1ME4a LINE L1 -7 6114 5513 204 313 67 47 chr6 5249490 5249640 -184029914 - MIR SINE MIR -1 261 109 3311 121 25 36 chr6 5249649 5250191 -184029363 - L1MA8 LINE L1 -426 5865 5328 2456 84 0 0 chr6 5250191 5250502 -184029052 - AluY SINE Alu 0 311 1 3311 121 25 36 chr6 5250502 5250650 -184028904 - L1MA8 LINE L1 -963 5328 5180 186 373 35 38 chr6 5250993 5251307 -184028247 + L2 LINE L2 2043 2355 -959 405 319 24 24 chr6 5251514 5251680 -184027874 - MIR SINE MIR -94 168 3 590 282 35 0 chr6 5251849 5252023 -184027531 - MER58A DNA MER1_type 0 224 45 1839 136 3 69 chr6 5252027 5252359 -184027195 + AluJb SINE Alu 1 310 -2 202 146 0 24 chr6 5252440 5252481 -184027073 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1829 136 6 73 chr6 5252594 5252924 -184026630 - AluJo SINE Alu 0 312 5 2213 129 90 5 chr6 5252936 5253347 -184026207 - Tigger2 DNA MER2_type 0 2718 2273 362 197 15 0 chr6 5253338 5253404 -184026150 - Tigger2 DNA MER2_type -2650 68 2 * 302 351 27 0 chr6 5253445 5253556 -184025998 + MIR SINE MIR 77 190 -72 403 298 31 43 chr6 5258199 5258379 -184021175 - MIR3 SINE MIR -64 144 12 276 291 157 13 chr6 5259105 5259487 -184020067 + L1ME3A LINE L1 2113 2549 -3597 23 0 0 0 chr6 5259570 5259593 -184019961 + AT_rich Low_complexity Low_complexity 1 23 0 265 308 0 0 chr6 5259599 5259677 -184019877 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 329 272 52 60 chr6 5259758 5259990 -184019564 + L1ME3A LINE L1 2745 2974 -3172 304 255 75 9 chr6 5260644 5260750 -184018804 + L1MC5 LINE L1 7249 7361 -600 730 219 122 48 chr6 5261089 5261523 -184018031 + L1MC5 LINE L1 7452 7917 -44 334 254 154 86 chr6 5261736 5262016 -184017538 + L1ME3A LINE L1 3475 3773 -2373 1151 274 52 50 chr6 5262056 5262849 -184016705 + L1ME3A LINE L1 3860 4653 -1493 383 299 95 33 chr6 5262991 5263333 -184016221 + L1ME3A LINE L1 4878 5231 -915 383 307 102 0 chr6 5263537 5263752 -184015802 + L1ME3A LINE L1 5354 5590 -572 316 303 28 0 chr6 5263814 5263956 -184015598 + L1ME3A LINE L1 5740 5885 -285 226 259 0 0 chr6 5264271 5264325 -184015229 + Charlie1 DNA MER1_type 2708 2761 0 22 0 0 0 chr6 5264802 5264824 -184014730 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr6 5265244 5265284 -184014270 + AT_rich Low_complexity Low_complexity 1 40 0 410 233 44 107 chr6 5266611 5266817 -184012737 - LTR41 LTR ERVL -5 768 576 629 171 39 0 chr6 5267077 5267206 -184012348 - LTR41 LTR ERVL -598 175 42 2207 72 11 0 chr6 5268244 5268577 -184010977 - AluY SINE Alu 0 336 1 456 19 0 0 chr6 5268651 5268704 -184010850 + (CA)n Simple_repeat Simple_repeat 2 54 0 1215 219 22 52 chr6 5270007 5270419 -184009135 - MLT2B1 LTR ERVL 0 414 1 294 326 23 38 chr6 5270714 5270846 -184008708 + MIR SINE MIR 20 149 -113 2338 99 0 16 chr6 5272693 5273007 -184006547 - AluSc SINE Alu 0 309 1 669 182 21 3 chr6 5273852 5274010 -184005544 - L1 LINE L1 -1031 5115 4959 705 89 27 9 chr6 5274043 5274155 -184005399 + L1MA5 LINE L1 6187 6300 0 2021 157 0 0 chr6 5274313 5274606 -184004948 + AluSx SINE Alu 1 293 -19 1688 224 93 28 chr6 5275006 5275072 -184004482 - L1ME LINE L1 -686 5549 5489 2354 108 0 6 chr6 5275072 5275386 -184004168 - AluSx SINE Alu 0 312 1 1688 224 93 28 chr6 5275386 5275481 -184004073 - L1ME LINE L1 -746 5489 5402 1662 180 30 3 chr6 5275481 5275776 -184003778 - AluJb SINE Alu -9 303 1 1688 224 93 28 chr6 5275776 5276394 -184003160 - L1ME LINE L1 -833 5402 4726 992 213 122 26 chr6 5276377 5276762 -184002792 - L1ME LINE L1 -4123 2273 1852 * 235 306 62 0 chr6 5277097 5277158 -184002396 + L1MEc LINE L1 35 91 -6305 216 0 0 0 chr6 5277158 5277182 -184002372 + (TAA)n Simple_repeat Simple_repeat 1 24 0 235 306 62 0 chr6 5277182 5277264 -184002290 + L1MEc LINE L1 91 187 -6209 2746 238 81 17 chr6 5277267 5278387 -184001167 + L1MEc LINE L1 256 1447 -4949 235 298 59 121 chr6 5278763 5279135 -184000419 + L2 LINE L2 1356 1704 -1610 615 349 96 41 chr6 5279211 5279993 -183999561 + L2 LINE L2 2060 2884 -430 3604 96 0 2 chr6 5280711 5281213 -183998341 + THE1B-int LTR MaLR 1080 1580 0 2061 116 101 18 chr6 5281213 5281549 -183998005 + THE1B LTR MaLR 1 364 0 1797 196 59 50 chr6 5282361 5282917 -183996637 + L1ME1 LINE L1 5606 6166 0 708 221 145 25 chr6 5284720 5284996 -183994558 - LTR16A LTR ERVL -78 372 64 261 0 0 0 chr6 5285855 5285884 -183993670 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1017 146 0 13 chr6 5285887 5286045 -183993509 - AluJo SINE Alu -30 282 127 407 322 66 0 chr6 5286152 5286304 -183993250 + MIR SINE MIR 24 185 -77 7826 106 8 0 chr6 5286698 5287752 -183991802 - THE1B-int LTR MaLR -517 1063 1 2246 108 108 21 chr6 5287752 5288087 -183991467 - THE1B LTR MaLR 0 364 1 378 283 53 84 chr6 5288299 5288525 -183991029 + MIR SINE MIR 39 257 -5 560 315 91 17 chr6 5288614 5288846 -183990708 - MIR SINE MIR 0 262 14 683 289 21 26 chr6 5290005 5290391 -183989163 + L1MC4a LINE L1 5534 5982 -1826 300 280 17 25 chr6 5291664 5291782 -183987772 - MIR SINE MIR -99 163 47 484 115 0 0 chr6 5292066 5292127 -183987427 - AluS SINE Alu -247 62 2 708 299 86 30 chr6 5292385 5292860 -183986694 - L1ME3A LINE L1 -230 5940 5439 867 171 35 29 chr6 5292860 5293030 -183986524 + AluJb SINE Alu 135 305 -7 21 36 0 0 chr6 5293097 5293125 -183986429 + AT_rich Low_complexity Low_complexity 1 28 0 236 292 35 21 chr6 5293130 5293274 -183986280 - L1ME3A LINE L1 -813 5333 5188 463 251 135 65 chr6 5294262 5294665 -183984889 + MLT1H LTR MaLR 30 547 -2 348 24 0 0 chr6 5294999 5295040 -183984514 + (TG)n Simple_repeat Simple_repeat 1 41 0 2411 95 0 0 chr6 5295093 5295399 -183984155 + AluSg SINE Alu 1 306 -4 198 0 0 0 chr6 5295399 5295421 -183984133 + (GA)n Simple_repeat Simple_repeat 2 23 0 574 192 0 10 chr6 5295481 5295585 -183983969 + L2 LINE L2 3189 3291 -22 504 235 90 36 chr6 5295773 5295939 -183983615 + MIR3 SINE MIR 11 185 -23 226 288 137 0 chr6 5296520 5296659 -183982895 + MER103 DNA DNA 7 164 -2 2432 69 0 13 chr6 5296824 5297129 -183982425 + AluY SINE Alu 1 301 -10 182 371 96 20 chr6 5297422 5297619 -183981935 - L2 LINE L2 -93 3179 2968 462 248 0 9 chr6 5297636 5297749 -183981805 - L1MA9 LINE L1 -38 6274 6163 191 360 126 18 chr6 5297975 5298197 -183981357 - L2 LINE L2 -562 2752 2507 340 250 0 0 chr6 5298552 5298616 -183980938 + MER8 DNA MER2_type 150 213 -26 443 338 87 51 chr6 5298684 5299152 -183980402 - L2 LINE L2 -55 3217 2725 1126 226 110 18 chr6 5299288 5299678 -183979876 - L1MC4a LINE L1 -1804 6004 5579 262 340 172 0 chr6 5299718 5299956 -183979598 - L2 LINE L2 -812 2502 2224 2342 102 0 13 chr6 5299973 5300288 -183979266 + AluSx SINE Alu 1 311 -1 202 135 27 0 chr6 5300474 5300511 -183979043 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1430 157 0 25 chr6 5300538 5300780 -183978774 - MER46A DNA MER2_type 0 236 1 1557 183 8 0 chr6 5300803 5301038 -183978516 + MER8 DNA MER2_type 3 239 0 933 231 74 26 chr6 5301297 5301608 -183977946 - MER58B DNA MER1_type -8 333 8 184 174 65 0 chr6 5301616 5301662 -183977892 - L2 LINE L2 -310 2962 2914 250 350 60 0 chr6 5303458 5303558 -183975996 + L2 LINE L2 3201 3306 -7 2182 92 0 24 chr6 5305235 5305550 -183974004 - AluY SINE Alu 0 311 1 369 258 22 82 chr6 5305831 5306013 -183973541 + L2 LINE L2 3118 3288 -25 334 298 37 62 chr6 5306616 5306777 -183972777 + MIR3 SINE MIR 16 172 -36 1975 150 10 0 chr6 5306841 5307147 -183972407 + AluJb SINE Alu 1 309 -3 503 245 0 0 chr6 5307147 5307253 -183972301 - L2 LINE L2 -14 3299 3194 2251 94 7 3 chr6 5307358 5307655 -183971899 + AluSg SINE Alu 1 298 -12 261 277 53 0 chr6 5308304 5308398 -183971156 + L2 LINE L2 3164 3262 -10 1016 286 61 61 chr6 5310608 5311234 -183968320 - HAL1 LINE L1 -30 2477 1852 368 255 68 19 chr6 5311282 5311443 -183968111 - LTR67 LTR ERVL -8 549 381 226 344 33 11 chr6 5311701 5311791 -183967763 - LTR67 LTR ERVL -367 190 99 279 54 0 0 chr6 5311873 5311910 -183967644 + (TG)n Simple_repeat Simple_repeat 2 38 0 1808 182 0 3 chr6 5311950 5312246 -183967308 - AluSx SINE Alu -17 295 1 342 233 186 16 chr6 5312343 5312472 -183967082 - L1MB8 LINE L1 -64 6114 5964 340 129 0 32 chr6 5312472 5312534 -183967020 - Alu SINE Alu -9 293 234 3063 189 89 101 chr6 5312534 5313844 -183965710 - L1ME1 LINE L1 -196 5970 4513 534 236 152 12 chr6 5313844 5314009 -183965545 - MER58A DNA MER1_type 0 224 37 3063 189 89 101 chr6 5314009 5314256 -183965298 - L1ME1 LINE L1 -1653 4513 4264 366 211 46 28 chr6 5314240 5314349 -183965205 - HAL1 LINE L1 -1043 1464 1354 * 196 204 0 45 chr6 5315007 5315051 -183964503 - L2 LINE L2 -1 3271 3230 207 0 0 0 chr6 5315694 5315717 -183963837 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 290 341 112 18 chr6 5315794 5316017 -183963537 + L3b LINE CR1 1272 1515 -68 311 314 108 10 chr6 5317299 5317401 -183962153 + L2 LINE L2 3138 3249 -23 236 234 125 16 chr6 5317587 5317715 -183961839 - MER5B DNA MER1_type -34 144 3 199 50 75 0 chr6 5318094 5318134 -183961420 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 363 240 10 48 chr6 5318632 5318736 -183960818 + MIR3 SINE MIR 109 208 0 252 159 0 0 chr6 5318938 5318982 -183960572 - L3 LINE CR1 -8 1569 1526 * 259 178 0 0 chr6 5318943 5318988 -183960566 - MIR3 SINE MIR -17 191 147 192 77 0 0 chr6 5319260 5319286 -183960268 + (A)n Simple_repeat Simple_repeat 1 26 0 657 340 31 12 chr6 5320721 5320977 -183958577 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 5320980 5321001 -183958553 + AT_rich Low_complexity Low_complexity 1 21 0 1385 159 0 5 chr6 5321061 5321359 -183958195 - MER2 DNA MER2_type 0 345 2 209 265 0 0 chr6 5323326 5323375 -183956179 + GA-rich Low_complexity Low_complexity 5 53 0 2551 70 0 3 chr6 5324151 5324463 -183955091 + AluY SINE Alu 1 311 0 202 239 0 0 chr6 5325138 5325184 -183954370 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2089 154 14 61 chr6 5325298 5325570 -183953984 - MER7A DNA MER2_type -2692 346 96 2204 97 10 0 chr6 5325570 5325859 -183953695 - AluSg SINE Alu -13 297 6 2089 154 14 61 chr6 5325859 5325949 -183953605 - MER7A DNA MER2_type -2942 96 3 292 311 185 12 chr6 5326411 5326702 -183952852 + L2 LINE L2 2712 3037 -276 343 197 94 60 chr6 5326869 5326986 -183952568 + MLT1L LTR MaLR 147 267 -348 330 236 85 9 chr6 5327123 5327229 -183952325 + MLT1L LTR MaLR 498 611 -4 544 273 42 42 chr6 5327234 5327450 -183952104 + L2 LINE L2 3098 3313 0 204 234 0 0 chr6 5327450 5327497 -183952057 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 677 222 74 39 chr6 5328436 5328639 -183950915 + MIR SINE MIR 5 214 -48 1917 134 0 3 chr6 5328643 5328956 -183950598 + AluJo SINE Alu 1 312 0 312 273 79 52 chr6 5329280 5329464 -183950090 - MIR SINE MIR -64 198 11 1229 289 150 6 chr6 5330878 5331365 -183948189 + L3 LINE CR1 527 1083 -494 314 215 116 70 chr6 5333078 5333250 -183946304 + MER104 DNA Tc2 1 180 0 320 306 88 69 chr6 5333453 5333714 -183945840 - L2 LINE L2 -22 3250 2985 253 151 0 38 chr6 5333983 5334036 -183945518 + LTR16C LTR ERVL 185 235 -256 354 267 68 25 chr6 5334096 5334257 -183945297 + LTR16C LTR ERVL 320 487 -4 1707 171 44 0 chr6 5334303 5334616 -183944938 + AluSx SINE Alu 1 288 -24 850 149 0 27 chr6 5334894 5335042 -183944512 + FRAM SINE Alu 32 175 -1 902 178 86 25 chr6 5335288 5335485 -183944069 + MER3 DNA MER1_type 1 209 0 241 277 108 0 chr6 5336125 5336208 -183943346 + MIR SINE MIR 115 206 -56 728 238 109 5 chr6 5336469 5336662 -183942892 - MER58C DNA MER1_type -2 213 1 749 257 30 0 chr6 5336670 5336872 -183942682 - MER3 DNA MER1_type -1 208 1 505 273 120 19 chr6 5336872 5337072 -183942482 + MIR SINE MIR 37 260 -2 28 0 0 0 chr6 5337122 5337150 -183942404 + AT_rich Low_complexity Low_complexity 1 28 0 482 295 29 70 chr6 5338316 5338560 -183940994 - MIR SINE MIR -8 254 21 192 285 131 22 chr6 5338572 5338709 -183940845 + MIR3 SINE MIR 50 201 -7 240 250 53 13 chr6 5339517 5339593 -183939961 - L2 LINE L2 -921 2393 2315 803 240 6 95 chr6 5339804 5340078 -183939476 - L2 LINE L2 -4 3309 3065 2053 144 0 0 chr6 5340078 5340376 -183939178 + AluSx SINE Alu 1 298 -14 803 240 6 95 chr6 5340376 5340418 -183939136 - L2 LINE L2 -248 3065 3021 2305 260 28 5 chr6 5340805 5341417 -183938137 - L1ME1 LINE L1 -2 6164 5539 1964 227 40 62 chr6 5341417 5341963 -183937591 + MLT1F LTR MaLR 9 542 0 815 236 29 12 chr6 5341965 5342206 -183937348 - L1ME1 LINE L1 -635 5529 5285 292 243 43 14 chr6 5343453 5343523 -183936031 - L2 LINE L2 -6 3307 3236 251 324 14 0 chr6 5343560 5343634 -183935920 - L2 LINE L2 -8 3305 3231 1212 115 0 0 chr6 5343980 5344145 -183935409 + AluSq SINE Alu 148 312 -1 565 296 17 48 chr6 5344458 5344688 -183934866 + MIR SINE MIR 30 252 -10 195 42 0 0 chr6 5345022 5345046 -183934508 + (T)n Simple_repeat Simple_repeat 1 24 0 2090 152 19 14 chr6 5347364 5347726 -183931828 - MLT1B LTR MaLR 0 390 27 718 217 0 8 chr6 5347760 5347889 -183931665 - FLAM_A SINE Alu -5 128 1 22 56 0 0 chr6 5348645 5348681 -183930873 + AT_rich Low_complexity Low_complexity 1 36 0 321 286 125 0 chr6 5349375 5349487 -183930067 + L2 LINE L2 3139 3264 -8 1766 83 0 0 chr6 5349810 5350027 -183929527 - AluSg/x SINE Alu -18 294 78 362 293 73 20 chr6 5350363 5350513 -183929041 + MIR3 SINE MIR 39 196 -12 204 97 0 0 chr6 5351083 5351114 -183928440 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 231 163 23 23 chr6 5351538 5351581 -183927973 + MIR SINE MIR 15 57 -205 342 0 0 0 chr6 5351840 5351878 -183927676 + (GA)n Simple_repeat Simple_repeat 1 38 0 204 262 87 58 chr6 5352146 5352249 -183927305 + MIR SINE MIR 139 244 -18 2073 114 7 0 chr6 5352383 5352701 -183926853 - AluSx SINE Alu 0 320 1 49 52 0 0 chr6 5354066 5354143 -183925411 + AT_rich Low_complexity Low_complexity 1 77 0 927 231 126 0 chr6 5354143 5354280 -183925274 + L1MA9 LINE L1 6000 6118 -194 297 0 0 0 chr6 5354280 5354313 -183925241 + (CA)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr6 5354312 5354341 -183925213 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 927 231 126 0 chr6 5354313 5354450 -183925104 + L1MA9 LINE L1 6118 6277 -35 35 0 0 0 chr6 5354455 5354490 -183925064 + AT_rich Low_complexity Low_complexity 1 35 0 1987 228 56 22 chr6 5354861 5355488 -183924066 - MER114 LTR ERV 0 648 1 707 188 160 14 chr6 5355730 5355874 -183923680 - AluJb SINE Alu -12 300 136 352 250 0 0 chr6 5356002 5356074 -183923480 - MER94 DNA DNA -62 72 1 1268 63 0 2 chr6 5356374 5356565 -183922989 - MER11C LTR ERVK -790 281 1 22 56 0 0 chr6 5356765 5356801 -183922753 + AT_rich Low_complexity Low_complexity 1 36 0 701 203 26 46 chr6 5359829 5359982 -183919572 - MER58B DNA MER1_type -1 340 191 773 350 52 11 chr6 5362639 5363005 -183916549 - L3 LINE CR1 -823 754 374 406 248 80 16 chr6 5363020 5363145 -183916409 - MLT1K LTR MaLR -2 586 454 255 213 13 93 chr6 5363146 5363221 -183916333 - MIR SINE MIR -120 88 20 246 326 12 0 chr6 5363489 5363575 -183915979 - L2 LINE L2 0 3272 3186 195 224 45 60 chr6 5363647 5363714 -183915840 - L2 LINE L2 0 3313 3248 206 336 128 38 chr6 5363852 5364197 -183915357 - L2 LINE L2 -557 2757 2382 * 305 216 99 27 chr6 5364169 5364280 -183915274 + L2 LINE L2 3150 3268 -4 180 0 0 0 chr6 5364995 5365015 -183914539 + (TA)n Simple_repeat Simple_repeat 2 21 0 1402 159 18 57 chr6 5365675 5365958 -183913596 - AluJb SINE Alu -17 295 24 2159 147 0 0 chr6 5366322 5366634 -183912920 - AluSx SINE Alu 0 312 1 518 278 67 66 chr6 5366869 5367203 -183912351 - MLT1I LTR MaLR -7 443 71 201 320 102 61 chr6 5367389 5367586 -183911968 + MIR3 SINE MIR 4 208 0 529 154 83 0 chr6 5368127 5368232 -183911322 + MER33 DNA MER1_type 1 103 -97 2099 103 3 10 chr6 5368239 5368531 -183911023 + AluSx SINE Alu 6 295 -17 812 151 49 27 chr6 5368559 5368744 -183910810 + MER33 DNA MER1_type 133 321 -42 22 0 0 0 chr6 5369667 5369689 -183909865 + AT_rich Low_complexity Low_complexity 1 22 0 266 294 95 87 chr6 5370165 5370396 -183909158 - L2 LINE L2 -1395 1919 1687 26 0 0 0 chr6 5370619 5370645 -183908909 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr6 5371108 5371138 -183908416 + AT_rich Low_complexity Low_complexity 1 30 0 245 298 75 11 chr6 5371514 5371608 -183907946 - L1MC/D LINE L1 -2268 5540 5441 29 0 0 0 chr6 5372008 5372037 -183907517 + AT_rich Low_complexity Low_complexity 1 29 0 252 263 105 42 chr6 5372339 5372434 -183907120 + L2 LINE L2 3210 3310 -3 303 198 18 90 chr6 5372953 5373064 -183906490 - MLT1J2 LTR MaLR -2 448 346 248 237 22 74 chr6 5373153 5373288 -183906266 - MLT1J1 LTR MaLR -281 165 38 879 248 57 5 chr6 5375501 5375711 -183903843 - MIR SINE MIR -25 237 17 2201 132 7 0 chr6 5377512 5377822 -183901732 - AluSq SINE Alu -1 312 1 21 36 0 0 chr6 5379089 5379117 -183900437 + AT_rich Low_complexity Low_complexity 1 28 0 653 170 0 10 chr6 5379117 5379217 -183900337 - FLAM_A SINE Alu -26 116 18 248 294 0 15 chr6 5379430 5379498 -183900056 + MIR SINE MIR 18 84 -178 660 247 52 81 chr6 5379721 5379992 -183899562 + MLT1L LTR MaLR 240 598 -9 412 257 71 0 chr6 5379994 5380107 -183899447 + MIR SINE MIR 78 198 -64 2300 95 0 0 chr6 5380217 5380511 -183899043 - AluSc SINE Alu -15 294 1 956 253 179 38 chr6 5380631 5381023 -183898531 + MLT1H LTR MaLR 100 546 -3 1760 274 6 4 chr6 5381059 5381540 -183898014 + L1MC4 LINE L1 7413 7894 -148 259 205 21 6 chr6 5381548 5381890 -183897664 + (TA)n Simple_repeat Simple_repeat 1 347 0 333 322 39 71 chr6 5381891 5382146 -183897408 - MLT1L LTR MaLR -201 414 168 2127 109 0 3 chr6 5383375 5383689 -183895865 + AluSg SINE Alu 1 313 0 190 107 0 0 chr6 5383661 5383718 -183895836 + (TAA)n Simple_repeat Simple_repeat 1 57 0 548 313 53 40 chr6 5384396 5384696 -183894858 - L2 LINE L2 -14 3299 2996 268 305 11 21 chr6 5384916 5385011 -183894543 - MIR3 SINE MIR -9 199 106 2434 177 59 4 chr6 5385167 5385676 -183893878 - L1MB4 LINE L1 -2 6178 5642 345 208 0 0 chr6 5385704 5385781 -183893773 + (CA)n Simple_repeat Simple_repeat 2 78 0 2555 183 10 51 chr6 5385795 5386798 -183892756 - L1MB4 LINE L1 -542 5632 3794 719 211 83 6 chr6 5387319 5387475 -183892079 + FRAM SINE Alu 1 166 -10 1263 305 88 57 chr6 5387959 5389025 -183890529 - L2 LINE L2 -567 2747 1649 186 43 0 0 chr6 5389686 5389709 -183889845 + (CA)n Simple_repeat Simple_repeat 2 24 0 2646 161 81 13 chr6 5390040 5390561 -183888993 - MER21A LTR ERV1 0 931 376 845 147 187 13 chr6 5390566 5390791 -183888763 - MER21A LTR ERV1 -667 264 1 412 184 112 0 chr6 5391672 5391770 -183887784 - MIR SINE MIR -17 245 137 3822 152 9 16 chr6 5391780 5391828 -183887726 - L1MB3 LINE L1 -2 6181 6134 2571 68 0 0 chr6 5391828 5392139 -183887415 - AluY SINE Alu 0 311 1 3822 152 9 16 chr6 5392139 5392769 -183886785 - L1MB3 LINE L1 -49 6134 5508 245 197 197 51 chr6 5392771 5392888 -183886666 - MIR SINE MIR -97 165 32 2349 105 0 0 chr6 5393064 5393370 -183886184 + AluSq SINE Alu 1 306 -7 201 74 0 0 chr6 5393378 5393405 -183886149 + (CAA)n Simple_repeat Simple_repeat 2 28 0 633 274 0 11 chr6 5394232 5394411 -183885143 - MER5B DNA MER1_type 0 178 2 703 112 0 0 chr6 5394484 5394591 -183884963 + AluSg/x SINE Alu 204 310 0 1776 78 62 0 chr6 5395296 5395554 -183884000 - L1PA6 LINE L1 -63 6091 5818 395 171 102 0 chr6 5395554 5395642 -183883912 + MLT2B2 LTR ERVL 369 465 -50 1315 132 51 180 chr6 5396360 5396715 -183882839 - AluJo SINE Alu -3 309 1 2176 92 0 24 chr6 5398606 5398921 -183880633 - AluY SINE Alu 0 311 1 361 258 22 82 chr6 5399202 5399384 -183880170 + L2 LINE L2 3118 3288 -25 343 298 37 62 chr6 5399987 5400148 -183879406 + MIR3 SINE MIR 16 172 -36 1990 150 10 0 chr6 5400212 5400518 -183879036 + AluJb SINE Alu 1 309 -3 503 245 0 0 chr6 5400518 5400624 -183878930 - L2 LINE L2 -14 3299 3194 2244 94 7 3 chr6 5400729 5401026 -183878528 + AluSg SINE Alu 1 298 -12 250 272 61 26 chr6 5401655 5401769 -183877785 + L2 LINE L2 3145 3262 -10 773 289 61 61 chr6 5403979 5404605 -183874949 - HAL1 LINE L1 -30 2477 1852 306 255 68 19 chr6 5404653 5404814 -183874740 - LTR67 LTR ERVL -8 549 381 279 54 0 0 chr6 5405244 5405281 -183874273 + (TG)n Simple_repeat Simple_repeat 2 38 0 1830 182 0 3 chr6 5405321 5405617 -183873937 - AluSx SINE Alu -17 295 1 303 233 181 15 chr6 5405714 5405847 -183873707 - L1MB8 LINE L1 -64 6114 5960 316 103 0 35 chr6 5405847 5405905 -183873649 - Alu SINE Alu -13 289 234 2756 190 91 103 chr6 5405905 5407215 -183872339 - L1ME1 LINE L1 -196 5970 4513 467 236 152 12 chr6 5407215 5407380 -183872174 - MER58A DNA MER1_type 0 224 37 2756 190 91 103 chr6 5407380 5407627 -183871927 - L1ME1 LINE L1 -1653 4513 4264 319 211 46 28 chr6 5407611 5407720 -183871834 - HAL1 LINE L1 -1043 1464 1354 * 198 204 0 45 chr6 5408378 5408422 -183871132 - L2 LINE L2 -1 3271 3230 207 0 0 0 chr6 5409065 5409088 -183870466 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 298 341 112 18 chr6 5409165 5409388 -183870166 + L3b LINE CR1 1272 1515 -68 249 322 99 16 chr6 5410651 5410772 -183868782 + L2 LINE L2 3160 3290 -23 231 234 125 16 chr6 5410958 5411086 -183868468 - MER5B DNA MER1_type -34 144 3 199 50 75 0 chr6 5411465 5411505 -183868049 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 369 240 10 48 chr6 5412003 5412107 -183867447 + MIR3 SINE MIR 109 208 0 251 159 0 0 chr6 5412309 5412353 -183867201 - L3 LINE CR1 -8 1569 1526 * 256 178 0 0 chr6 5412314 5412359 -183867195 - MIR3 SINE MIR -17 191 147 192 77 0 0 chr6 5412631 5412657 -183866897 + (A)n Simple_repeat Simple_repeat 1 26 0 682 340 31 12 chr6 5414092 5414348 -183865206 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 5414351 5414372 -183865182 + AT_rich Low_complexity Low_complexity 1 21 0 1281 159 0 5 chr6 5414432 5414730 -183864824 - MER2 DNA MER2_type 0 345 2 25 31 0 0 chr6 5416379 5416411 -183863143 + AT_rich Low_complexity Low_complexity 1 32 0 2151 136 3 0 chr6 5417890 5418199 -183861355 - AluSx SINE Alu -2 310 1 345 223 136 82 chr6 5419247 5419431 -183860123 + MIR SINE MIR 21 214 -48 332 140 0 0 chr6 5420622 5420682 -183858872 + FRAM/FAM SINE Alu 28 75 -100 236 234 52 0 chr6 5420763 5420840 -183858714 - L1MC4 LINE L1 -1350 6692 6612 671 159 26 0 chr6 5420840 5420991 -183858563 + (TA)n Simple_repeat Simple_repeat 1 155 0 32 26 0 0 chr6 5421003 5421042 -183858512 + AT_rich Low_complexity Low_complexity 1 39 0 2251 76 3 10 chr6 5421395 5421683 -183857871 + AluSc SINE Alu 1 286 -23 232 184 0 0 chr6 5422215 5422253 -183857301 - U6 snRNA snRNA -69 38 1 1344 179 105 10 chr6 5422262 5422558 -183856996 + MER7A DNA MER2_type 21 342 -4 2110 133 0 0 chr6 5423085 5423371 -183856183 - AluSx SINE Alu -26 286 1 2698 153 24 8 chr6 5425154 5425658 -183853896 + L1MC1 LINE L1 5822 6333 0 448 253 48 20 chr6 5425735 5425881 -183853673 - L1MD3 LINE L1 -215 7780 7631 5957 211 84 66 chr6 5425881 5427219 -183852335 - L1MC4a LINE L1 -288 7520 6122 1876 131 0 4 chr6 5427219 5427487 -183852067 - AluSx SINE Alu -30 282 16 5957 211 84 66 chr6 5427487 5428372 -183851182 - L1MC4a LINE L1 -1686 6122 5255 392 318 39 37 chr6 5428479 5428644 -183850910 - L1 LINE L1 -3325 2821 2662 240 35 0 0 chr6 5428644 5428673 -183850881 + (TG)n Simple_repeat Simple_repeat 2 30 0 392 318 39 37 chr6 5428673 5428808 -183850746 - L1 LINE L1 -3484 2662 2529 234 280 31 44 chr6 5428884 5429109 -183850445 - L1 LINE L1 -3687 2459 2238 272 317 86 31 chr6 5429459 5429938 -183849616 - HAL1b LINE L1 -510 838 334 323 347 52 21 chr6 5429999 5430192 -183849362 - HAL1 LINE L1 -1218 1289 1091 212 222 14 42 chr6 5430244 5430316 -183849238 + T-rich Low_complexity Low_complexity 2 71 0 201 39 0 0 chr6 5431047 5431073 -183848481 + (CCTG)n Simple_repeat Simple_repeat 3 28 0 32 0 0 0 chr6 5431533 5431565 -183847989 + AT_rich Low_complexity Low_complexity 1 32 0 408 294 94 0 chr6 5431925 5432105 -183847449 - MIR SINE MIR 0 262 66 191 300 25 25 chr6 5432108 5432188 -183847366 - L2 LINE L2 -37 3276 3197 1547 156 51 0 chr6 5432746 5432802 -183846752 - MER46B DNA MER2_type -2495 236 184 2250 93 3 46 chr6 5432802 5433126 -183846428 - AluSg SINE Alu 0 310 1 1547 156 51 0 chr6 5433126 5433364 -183846190 - MER46B DNA MER2_type -2547 184 52 2353 68 3 19 chr6 5433507 5433817 -183845737 - AluY SINE Alu -6 305 1 267 188 31 0 chr6 5434246 5434310 -183845244 - L1ME2 LINE L1 -10 6154 6089 * 1193 235 92 25 chr6 5434304 5434976 -183844578 - L1ME2 LINE L1 -21 6143 5435 288 0 0 0 chr6 5435069 5435101 -183844453 + (TA)n Simple_repeat Simple_repeat 1 32 0 284 188 72 0 chr6 5435101 5435170 -183844384 + L1ME1 LINE L1 5368 5441 -721 307 252 47 16 chr6 5435346 5435473 -183844081 - L1MEd LINE L1 -5980 139 9 229 363 48 16 chr6 5436510 5436634 -183842920 + MIR3 SINE MIR 14 141 -67 2128 101 3 14 chr6 5437201 5437498 -183842056 + AluSc SINE Alu 1 294 -15 2141 119 0 28 chr6 5438175 5438495 -183841059 - AluSx SINE Alu -1 311 1 28 29 0 0 chr6 5439202 5439237 -183840317 + AT_rich Low_complexity Low_complexity 1 35 0 994 219 22 75 chr6 5439703 5440064 -183839490 + L1ME1 LINE L1 5802 6143 -23 247 263 11 11 chr6 5440091 5440186 -183839368 + MER113 DNA MER1_type? 139 233 -288 1740 162 10 26 chr6 5440337 5440645 -183838909 + AluJo SINE Alu 1 303 -9 326 311 41 16 chr6 5440655 5440777 -183838777 + MIR SINE MIR 20 144 -118 30 27 0 0 chr6 5441365 5441402 -183838152 + AT_rich Low_complexity Low_complexity 1 37 0 47 0 0 0 chr6 5442804 5442851 -183836703 + AT_rich Low_complexity Low_complexity 1 47 0 2014 87 11 4 chr6 5442876 5443142 -183836412 + AluSx SINE Alu 29 296 -16 620 43 98 0 chr6 5443142 5443305 -183836249 + (TA)n Simple_repeat Simple_repeat 1 179 0 25 0 0 0 chr6 5443330 5443355 -183836199 + AT_rich Low_complexity Low_complexity 1 25 0 402 295 31 55 chr6 5443900 5444155 -183835399 + MIR SINE MIR 4 249 -13 183 42 0 0 chr6 5444917 5444941 -183834613 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2095 115 0 7 chr6 5444941 5445228 -183834326 - AluSx SINE Alu -27 285 1 22 0 0 0 chr6 5445228 5445250 -183834304 + AT_rich Low_complexity Low_complexity 1 22 0 267 279 29 10 chr6 5445531 5445635 -183833919 + CT-rich Low_complexity Low_complexity 2 107 0 319 324 176 9 chr6 5445746 5445968 -183833586 - MIR SINE MIR -1 261 3 204 350 39 82 chr6 5447252 5447508 -183832046 - L2 LINE L2 -19 3253 3009 316 283 116 52 chr6 5447508 5447681 -183831873 - MER5A DNA MER1_type -1 188 5 1218 203 27 34 chr6 5447714 5448150 -183831404 - L1ME1 LINE L1 -4 6162 5628 820 252 48 21 chr6 5448142 5448475 -183831079 - L1ME LINE L1 -3479 2601 2260 * 814 271 66 69 chr6 5448483 5449459 -183830095 - L1ME LINE L1 -4310 1770 780 1339 149 40 4 chr6 5449459 5449687 -183829867 - MER46A DNA MER2_type 0 236 1 814 271 66 69 chr6 5449687 5450139 -183829415 - L1ME LINE L1 -5300 780 328 318 262 41 103 chr6 5450228 5450373 -183829181 - L1ME LINE L1 -5844 226 91 252 214 29 14 chr6 5450632 5450702 -183828852 + CT-rich Low_complexity Low_complexity 3 73 0 503 268 91 63 chr6 5450884 5451246 -183828308 - L1ME4a LINE L1 -1 6120 5749 230 289 13 0 chr6 5451258 5451334 -183828220 - L1ME4a LINE L1 -422 5699 5623 660 163 0 62 chr6 5451507 5451636 -183827918 - FLAM_A SINE Alu -11 122 2 2135 134 0 6 chr6 5451724 5452037 -183827517 - AluSx SINE Alu -1 311 1 1393 198 14 11 chr6 5452047 5452330 -183827224 + MER82 DNA MER2_type 358 641 -12 255 103 0 0 chr6 5452463 5452502 -183827052 + (TG)n Simple_repeat Simple_repeat 1 39 0 692 89 0 0 chr6 5452547 5452637 -183826917 + AluSg SINE Alu 1 90 -220 2015 79 0 0 chr6 5502637 5502890 -183776664 + AluY SINE Alu 59 311 0 705 224 156 29 chr6 5502900 5503105 -183776449 + MIR SINE MIR 11 241 -21 2289 81 0 42 chr6 5503316 5503623 -183775931 - AluSx SINE Alu -16 296 3 258 156 47 16 chr6 5503964 5504028 -183775526 + T-rich Low_complexity Low_complexity 3 68 0 2187 123 0 0 chr6 5504061 5504363 -183775191 + AluSg SINE Alu 1 302 -8 227 100 0 25 chr6 5504365 5504405 -183775149 + (GGAA)n Simple_repeat Simple_repeat 4 42 0 192 61 61 0 chr6 5504627 5504660 -183774894 + MIR SINE MIR 116 150 -112 218 240 0 0 chr6 5505192 5505242 -183774312 - L2 LINE L2 -2 3270 3221 478 307 42 16 chr6 5506417 5506606 -183772948 - MIR SINE MIR 0 262 69 193 143 0 29 chr6 5507441 5507476 -183772078 + MIR SINE MIR 109 142 -120 797 184 126 26 chr6 5507649 5507839 -183771715 - MIR SINE MIR -18 244 36 306 0 0 0 chr6 5508160 5508194 -183771360 + (CA)n Simple_repeat Simple_repeat 2 35 0 205 298 0 18 chr6 5508558 5508615 -183770939 + CT-rich Low_complexity Low_complexity 1 56 0 2636 155 29 31 chr6 5509232 5509749 -183769805 - L1MA9 LINE L1 -22 6290 5775 227 241 48 0 chr6 5509749 5509832 -183769722 + (CATATA)n Simple_repeat Simple_repeat 6 92 0 1162 165 26 35 chr6 5509833 5510063 -183769491 - L1MA9 LINE L1 -524 5788 5561 * 4008 171 58 1 chr6 5510058 5510699 -183768855 - L1MA9 LINE L1 -1777 4369 3675 207 0 0 0 chr6 5510699 5510722 -183768832 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 4008 171 58 1 chr6 5510722 5510857 -183768697 - L1MA9 LINE L1 -2471 3675 3549 409 285 7 35 chr6 5511148 5511292 -183768262 + MIR SINE MIR 67 206 -56 371 220 156 0 chr6 5511642 5511751 -183767803 - MER103 DNA DNA -38 128 3 447 247 227 0 chr6 5511808 5511958 -183767596 + MIR SINE MIR 18 201 -61 479 232 209 38 chr6 5513208 5513419 -183766135 + MIR SINE MIR 14 260 -2 574 298 44 24 chr6 5513943 5514191 -183765363 + MIR SINE MIR 5 257 -5 28 0 0 0 chr6 5515881 5515909 -183763645 + AT_rich Low_complexity Low_complexity 1 28 0 2126 137 3 6 chr6 5516154 5516467 -183763087 + AluJb SINE Alu 1 312 0 1429 218 209 14 chr6 5518498 5519158 -183760396 - LTR50 LTR ERVL -1 794 6 307 250 86 23 chr6 5519823 5519951 -183759603 - MIR SINE MIR -67 195 60 268 311 58 0 chr6 5520069 5520172 -183759382 - MIR SINE MIR -46 216 108 184 301 122 41 chr6 5520282 5520405 -183759149 + MIR3 SINE MIR 10 142 -66 1710 169 14 0 chr6 5522160 5522439 -183757115 + AluJo SINE Alu 5 287 -25 231 146 0 0 chr6 5522447 5522488 -183757066 + (TAAG)n Simple_repeat Simple_repeat 1 41 0 664 118 55 31 chr6 5523647 5523774 -183755780 - L1MB8 LINE L1 -19 6159 6030 1331 198 71 39 chr6 5524916 5525254 -183754300 + MLT1A1 LTR MaLR 6 354 -11 2492 77 0 6 chr6 5525291 5525603 -183753951 + AluSp SINE Alu 1 310 -3 648 310 45 4 chr6 5525625 5525867 -183753687 + MIR SINE MIR 8 259 -3 2380 92 3 0 chr6 5526419 5526722 -183752832 + AluSc SINE Alu 1 304 -5 254 234 234 0 chr6 5526976 5527053 -183752501 - MIR SINE MIR -54 208 114 340 147 80 13 chr6 5527068 5527143 -183752411 - REP3 LTR ERV 0 562 483 1196 187 5 5 chr6 5527144 5527363 -183752191 - AluJb SINE Alu -9 303 85 2003 206 71 21 chr6 5527363 5527475 -183752079 - REP3 LTR ERV -70 492 387 2131 202 53 18 chr6 5527475 5527926 -183751628 - MLT1C LTR MaLR 0 467 1 2003 206 71 21 chr6 5527926 5528279 -183751275 - REP3 LTR ERV -175 387 4 599 264 16 21 chr6 5528413 5528606 -183750948 - LTR16A LTR ERVL -1 449 258 531 300 127 22 chr6 5529896 5530541 -183749013 + L1MEd LINE L1 860 1668 -822 916 264 69 27 chr6 5530610 5531058 -183748496 - LTR40a LTR ERVL -6 513 97 22 35 0 0 chr6 5531131 5531160 -183748394 + AT_rich Low_complexity Low_complexity 1 29 0 420 20 0 0 chr6 5531333 5531382 -183748172 + (TG)n Simple_repeat Simple_repeat 2 50 0 271 272 41 54 chr6 5532045 5532192 -183747362 - L1M4 LINE L1 -3276 2870 2726 236 393 0 0 chr6 5533468 5533636 -183745918 + (CCA)n Simple_repeat Simple_repeat 1 168 0 23 33 0 0 chr6 5534358 5534388 -183745166 + AT_rich Low_complexity Low_complexity 1 30 0 1263 183 201 14 chr6 5534415 5534704 -183744850 - MER2 DNA MER2_type 0 344 2 190 279 0 0 chr6 5534790 5534833 -183744721 + MIR3 SINE MIR 165 207 -1 434 349 92 34 chr6 5537733 5538025 -183741529 - L2 LINE L2 -10 3262 2954 238 262 12 48 chr6 5538181 5538265 -183741289 - L2 LINE L2 -531 2783 2703 530 326 80 46 chr6 5538273 5538449 -183741105 - HAL1b LINE L1 -437 911 742 2205 76 40 7 chr6 5538449 5538750 -183740804 - AluY SINE Alu 0 311 1 530 326 80 46 chr6 5538750 5539076 -183740478 - HAL1b LINE L1 -606 742 392 479 259 75 49 chr6 5539082 5539348 -183740206 - HAL1b LINE L1 -987 361 89 255 122 0 0 chr6 5540062 5540111 -183739443 + (A)n Simple_repeat Simple_repeat 1 49 0 256 159 302 0 chr6 5540284 5540347 -183739207 + MLT1J LTR MaLR 353 434 -77 1578 112 29 8 chr6 5540492 5540733 -183738821 - Tigger4(Zombi) DNA MER2_type 0 2731 2486 430 156 0 0 chr6 5540724 5540788 -183738766 - Tigger4(Zombi) DNA MER2_type -2666 65 2 * 23 33 0 0 chr6 5541184 5541214 -183738340 + AT_rich Low_complexity Low_complexity 1 30 0 589 258 165 56 chr6 5541487 5541948 -183737606 + MLT1J LTR MaLR 1 511 0 854 254 26 10 chr6 5542041 5542234 -183737320 - MER58A DNA MER1_type -28 196 1 815 132 101 141 chr6 5544123 5544350 -183735204 - MER20 DNA MER1_type -1 218 1 1421 178 113 14 chr6 5545167 5545442 -183734112 - AluJo SINE Alu -10 302 1 1036 163 15 49 chr6 5546471 5546674 -183732880 + MLT1A1 LTR MaLR 1 196 -169 999 189 25 15 chr6 5546687 5546888 -183732666 + MLT1A1 LTR MaLR 163 365 0 279 314 146 11 chr6 5547038 5547223 -183732331 + MIR SINE MIR 7 216 -46 21 0 0 0 chr6 5547456 5547477 -183732077 + AT_rich Low_complexity Low_complexity 1 21 0 2280 115 0 0 chr6 5547483 5547788 -183731766 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr6 5548867 5548890 -183730664 + GC_rich Low_complexity Low_complexity 1 23 0 1529 122 37 29 chr6 5550821 5551067 -183728487 - Tigger3(Golem) DNA MER2_type -1 3028 2781 1130 207 10 0 chr6 5551064 5551267 -183728287 - Tigger3(Golem) DNA MER2_type -2824 205 1 * 724 181 111 23 chr6 5556446 5556617 -183722937 - L1MB5 LINE L1 0 6174 5989 397 188 10 10 chr6 5556618 5556714 -183722840 + CT-rich Low_complexity Low_complexity 1 96 0 1188 152 24 5 chr6 5556722 5556932 -183722622 - L1MB5 LINE L1 -711 5467 5254 326 185 12 0 chr6 5556985 5557066 -183722488 + CT-rich Low_complexity Low_complexity 3 84 0 745 217 0 0 chr6 5557185 5557314 -183722240 - FLAM_A SINE Alu -4 129 1 2385 89 26 0 chr6 5557315 5557618 -183721936 - AluSx SINE Alu 0 312 2 352 312 89 58 chr6 5557818 5558302 -183721252 - L1M4 LINE L1 -754 5392 4894 1641 146 45 68 chr6 5558353 5558661 -183720893 - AluJo SINE Alu -11 301 1 426 273 73 12 chr6 5559031 5559196 -183720358 + MIR SINE MIR 5 179 -83 202 204 0 45 chr6 5559196 5559240 -183720314 + L2 LINE L2 3221 3262 -10 223 281 34 0 chr6 5561502 5561591 -183717963 - MIR SINE MIR -152 110 19 2191 125 74 11 chr6 5561674 5562041 -183717513 - MLT1B LTR MaLR 0 390 1 2421 91 0 0 chr6 5562334 5562642 -183716912 + AluSx SINE Alu 1 308 -4 197 231 215 0 chr6 5563125 5563190 -183716364 + MIR SINE MIR 42 120 -88 234 0 0 0 chr6 5564191 5564217 -183715337 + (TG)n Simple_repeat Simple_repeat 2 27 0 1586 194 40 65 chr6 5564573 5565021 -183714533 + LTR56 LTR ERV1 9 445 0 2034 137 0 0 chr6 5565335 5565648 -183713906 - AluSx SINE Alu 0 313 1 251 250 232 9 chr6 5566001 5566113 -183713441 + L2 LINE L2 3175 3311 -2 241 268 0 0 chr6 5566147 5566203 -183713351 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 233 250 0 0 chr6 5566204 5566260 -183713294 - L1MD3 LINE L1 -1328 6667 6612 1791 150 33 13 chr6 5568258 5568564 -183710990 - AluJb SINE Alu 0 312 1 323 102 20 0 chr6 5568655 5568704 -183710850 - Alu SINE Alu -243 57 8 276 270 51 29 chr6 5570385 5570522 -183709032 + MIR3 SINE MIR 65 204 -4 2369 123 6 3 chr6 5570626 5570968 -183708586 + MER2 DNA MER2_type 1 343 -1 216 230 122 0 chr6 5571315 5571389 -183708165 + L2 LINE L2 3186 3268 -4 624 276 84 10 chr6 5571911 5572114 -183707440 + MIR SINE MIR 7 224 -38 229 239 28 28 chr6 5572659 5572730 -183706824 + CT-rich Low_complexity Low_complexity 1 71 0 23 54 0 0 chr6 5572808 5572845 -183706709 + AT_rich Low_complexity Low_complexity 1 37 0 523 229 15 8 chr6 5572868 5572999 -183706555 + L2 LINE L2 3182 3313 0 703 288 14 18 chr6 5573624 5573846 -183705708 - MIR SINE MIR -36 226 6 195 42 0 0 chr6 5574307 5574331 -183705223 + (T)n Simple_repeat Simple_repeat 1 24 0 1988 72 12 0 chr6 5574578 5574828 -183704726 - AluY SINE Alu -58 253 1 230 326 8 47 chr6 5574916 5575045 -183704509 + MIR SINE MIR 28 151 -111 1289 257 58 58 chr6 5575045 5575527 -183704027 + HAL1 LINE L1 1 482 -2025 724 268 38 1 chr6 5575730 5575943 -183703611 - MIR SINE MIR -13 249 31 591 275 35 45 chr6 5576162 5576449 -183703105 + HAL1 LINE L1 2224 2507 0 257 372 0 0 chr6 5577466 5577552 -183702002 - L2 LINE L2 -13 3259 3174 230 290 194 0 chr6 5577773 5577866 -183701688 - L2 LINE L2 0 3313 3203 2403 161 37 37 chr6 5578791 5579225 -183700329 + Tigger2a DNA MER2_type 1 434 0 1197 207 27 3 chr6 5579424 5579867 -183699687 - MLT1D LTR MaLR 0 505 1 2286 104 7 0 chr6 5580602 5580900 -183698654 - AluSx SINE Alu -12 300 1 250 218 46 11 chr6 5581093 5581180 -183698374 + (TA)n Simple_repeat Simple_repeat 1 90 0 742 222 81 30 chr6 5581874 5582054 -183697500 + MIR SINE MIR 17 213 -49 1976 109 4 14 chr6 5582054 5582329 -183697225 + AluSp SINE Alu 33 304 -9 742 222 81 30 chr6 5582329 5582382 -183697172 + MIR SINE MIR 213 262 0 296 236 0 28 chr6 5583234 5583306 -183696248 - MIR3 SINE MIR -1 207 138 184 288 25 50 chr6 5583439 5583519 -183696035 - L2 LINE L2 -77 3195 3118 204 222 0 0 chr6 5584182 5584227 -183695327 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1840 169 0 16 chr6 5584413 5584721 -183694833 + AluJb SINE Alu 1 303 -9 884 305 150 27 chr6 5584848 5586065 -183693489 - L2 LINE L2 -420 2894 1528 817 234 53 13 chr6 5586792 5587019 -183692535 + MIR SINE MIR 14 249 -13 270 196 144 21 chr6 5589045 5589142 -183690412 + L3 LINE CR1 1278 1386 -191 4076 111 37 0 chr6 5590678 5591274 -183688280 + L1PA13 LINE L1 5546 6163 0 2197 115 0 0 chr6 5591289 5591585 -183687969 + AluSg SINE Alu 1 296 -14 350 247 22 0 chr6 5591727 5591816 -183687738 - MIR3 SINE MIR -4 204 114 228 316 13 3 chr6 5592631 5592723 -183686831 + MIR SINE MIR 12 106 -102 2346 94 3 10 chr6 5592738 5593047 -183686507 - AluSq SINE Alu -6 307 1 221 242 133 55 chr6 5593048 5593176 -183686378 + MIR SINE MIR 88 225 -37 198 327 158 0 chr6 5594449 5594550 -183685004 + L2 LINE L2 3137 3253 -19 240 111 0 0 chr6 5598245 5598281 -183681273 + (A)n Simple_repeat Simple_repeat 1 36 0 307 354 12 43 chr6 5598887 5599051 -183680503 - MIR3 SINE MIR -27 181 23 181 227 0 0 chr6 5599138 5599182 -183680372 + L2 LINE L2 3261 3304 -9 360 0 0 0 chr6 5599251 5599291 -183680263 + (CA)n Simple_repeat Simple_repeat 2 41 0 191 328 17 0 chr6 5601834 5601892 -183677662 + L2 LINE L2 3128 3186 -86 329 226 0 43 chr6 5604662 5604755 -183674799 - L1ME4a LINE L1 -74 6047 5959 701 288 133 20 chr6 5604861 5605346 -183674208 + L1ME4a LINE L1 5310 5837 -284 299 272 65 0 chr6 5605483 5605575 -183673979 + L1ME4a LINE L1 5997 6094 -27 463 289 187 18 chr6 5606683 5607441 -183672113 - L2 LINE L2 -1 3312 2376 3487 71 2 0 chr6 5607655 5608106 -183671448 - L1PA8 LINE L1 0 6172 5721 265 224 0 45 chr6 5610135 5610202 -183669352 + L2 LINE L2 3200 3263 -9 44751 42 4 0 chr6 5610252 5616388 -183663166 - L1PA4 LINE L1 -1 6154 1 184 340 0 0 chr6 5616521 5616574 -183662980 - L2 LINE L2 -15 3257 3205 1371 254 172 12 chr6 5617618 5618150 -183661404 - MLT1G LTR MaLR -3 587 14 24 0 0 0 chr6 5618578 5618602 -183660952 + AT_rich Low_complexity Low_complexity 1 24 0 1643 176 7 27 chr6 5618773 5619074 -183660480 + AluJo SINE Alu 1 295 -17 580 274 65 11 chr6 5619520 5619706 -183659848 - MIR SINE MIR -6 256 61 586 293 116 19 chr6 5619943 5620228 -183659326 + L1MC/D LINE L1 5315 5625 -599 22 0 0 0 chr6 5621936 5621958 -183657596 + AT_rich Low_complexity Low_complexity 1 22 0 2076 141 128 16 chr6 5622175 5622558 -183656996 - MSTA LTR MaLR -2 426 1 365 250 98 8 chr6 5622781 5622913 -183656641 - MLT1I LTR MaLR 0 409 266 438 167 12 0 chr6 5623449 5623533 -183656021 + MER5A DNA MER1_type 20 104 -85 1715 88 0 5 chr6 5623562 5623778 -183655776 - AluSg/x SINE Alu -15 297 83 358 280 189 0 chr6 5623822 5623965 -183655589 - MER5B DNA MER1_type -3 175 6 2087 94 36 0 chr6 5624460 5624735 -183654819 - AluSg SINE Alu -14 296 12 1956 159 47 6 chr6 5628149 5628489 -183651065 - MLT1A1 LTR MaLR -1 364 11 383 193 34 0 chr6 5628926 5629014 -183650540 + MIR SINE MIR 122 212 -50 24 0 0 0 chr6 5629060 5629084 -183650470 + AT_rich Low_complexity Low_complexity 1 24 0 2109 160 0 3 chr6 5630047 5630384 -183649170 - MER1B DNA MER1_type -1 336 1 1723 142 0 12 chr6 5632724 5632978 -183646576 - AluJo SINE Alu -24 288 38 336 216 0 0 chr6 5633723 5633820 -183645734 + (TG)n Simple_repeat Simple_repeat 1 97 0 1462 293 75 11 chr6 5634424 5635039 -183644515 + L1MEc LINE L1 31 684 -5712 2763 170 135 121 chr6 5635040 5635339 -183644215 + L1MC3 LINE L1 6757 7050 -735 276 30 0 0 chr6 5635339 5635372 -183644182 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 2763 170 135 121 chr6 5635372 5635407 -183644147 + L1MC3 LINE L1 7050 7083 -702 260 234 26 13 chr6 5635407 5635484 -183644070 + MLT1F1 LTR MaLR 33 110 -457 2763 170 135 121 chr6 5635484 5636074 -183643480 + L1MC3 LINE L1 7083 7772 -13 226 110 121 55 chr6 5636074 5636165 -183643389 - MER63 DNA MER1_type -91 970 874 189 337 23 12 chr6 5636644 5636730 -183642824 - MIR SINE MIR -149 113 27 22 0 0 0 chr6 5638020 5638042 -183641512 + AT_rich Low_complexity Low_complexity 1 22 0 2278 113 0 0 chr6 5638794 5639097 -183640457 + AluSx SINE Alu 1 300 -12 650 301 74 5 chr6 5639109 5639325 -183640229 - MIR SINE MIR -19 243 13 3618 170 29 42 chr6 5639380 5640144 -183639410 - L1MB8 LINE L1 -51 6127 5374 331 252 119 50 chr6 5640153 5640431 -183639123 - L1MC5 LINE L1 -182 7779 7483 3714 169 69 90 chr6 5640488 5641397 -183638157 - MER21A LTR ERV1 -26 905 16 363 44 0 0 chr6 5641397 5641442 -183638112 + (TG)n Simple_repeat Simple_repeat 2 46 0 914 154 37 56 chr6 5641483 5641697 -183637857 - L1MC5 LINE L1 -494 7467 7258 21 0 0 0 chr6 5641753 5641774 -183637780 + AT_rich Low_complexity Low_complexity 1 21 0 257 143 24 0 chr6 5641805 5641847 -183637707 - L1MC5 LINE L1 -737 7224 7182 252 0 0 0 chr6 5641960 5641988 -183637566 + (TA)n Simple_repeat Simple_repeat 1 28 0 2019 108 4 0 chr6 5641988 5642265 -183637289 - AluSx SINE Alu -34 278 1 322 333 63 24 chr6 5642326 5642452 -183637102 + L2 LINE L2 3142 3272 0 1775 164 3 22 chr6 5643152 5643529 -183636025 + AluJb SINE Alu 1 371 0 208 273 73 0 chr6 5644564 5644619 -183634935 - L2 LINE L2 -16 3297 3239 5117 183 86 64 chr6 5644684 5644817 -183634737 - Charlie1a DNA MER1_type -1325 1436 1307 1419 179 13 43 chr6 5644817 5645119 -183634435 + AluJo SINE Alu 3 295 -17 5117 183 86 64 chr6 5645119 5646386 -183633168 - Charlie1a DNA MER1_type -1454 1307 6 275 317 54 32 chr6 5646586 5646807 -183632747 - L2 LINE L2 -361 2953 2728 364 311 92 41 chr6 5647395 5647591 -183631963 + MIR SINE MIR 6 211 -51 385 329 35 21 chr6 5648774 5648917 -183630637 - L3 LINE CR1 -154 1423 1279 265 250 125 39 chr6 5648919 5649047 -183630507 - L2 LINE L2 -16 3297 3159 640 293 139 5 chr6 5649488 5649703 -183629851 + MIR SINE MIR 13 256 -6 2062 106 3 0 chr6 5649705 5649998 -183629556 + AluSx SINE Alu 1 294 -18 294 269 123 58 chr6 5651049 5651220 -183628334 + MIR SINE MIR 67 248 -14 1029 212 5 5 chr6 5653908 5654106 -183625448 - MER20 DNA MER1_type -21 198 1 800 217 128 10 chr6 5654840 5655043 -183624511 - MIR SINE MIR 0 262 36 249 313 21 10 chr6 5655306 5655402 -183624152 + CT-rich Low_complexity Low_complexity 1 97 0 391 200 27 0 chr6 5656180 5656255 -183623299 - L2 LINE L2 -11 3261 3185 253 312 11 11 chr6 5656392 5656485 -183623069 + MIR SINE MIR 162 254 -8 198 329 89 0 chr6 5656936 5657015 -183622539 - L2 LINE L2 -17 3255 3170 487 299 77 11 chr6 5657822 5658052 -183621502 + MIR SINE MIR 13 261 -1 367 357 14 0 chr6 5658641 5658784 -183620770 - MIR SINE MIR -10 252 108 318 67 0 0 chr6 5658854 5658899 -183620655 + (CATA)n Simple_repeat Simple_repeat 2 46 0 424 272 32 10 chr6 5659271 5659382 -183620172 - MIR SINE MIR -88 120 6 1579 203 73 35 chr6 5660058 5660482 -183619072 - MLT1F LTR MaLR -102 440 1 2050 127 0 0 chr6 5661302 5661594 -183617960 + AluSg SINE Alu 1 292 -18 375 237 73 73 chr6 5661672 5661941 -183617613 + MLT1J LTR MaLR 62 364 -147 195 100 0 0 chr6 5661988 5662018 -183617536 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1658 154 11 7 chr6 5662029 5662301 -183617253 - AluJo SINE Alu -39 273 1 1138 175 75 12 chr6 5663010 5663250 -183616304 - L1MD2 LINE L1 -275 6084 5830 934 129 0 8 chr6 5663265 5663397 -183616157 + FLAM_C SINE Alu 1 131 -2 577 297 91 18 chr6 5663908 5664127 -183615427 - MIR SINE MIR -15 247 13 2234 99 0 3 chr6 5665690 5666003 -183613551 - AluSx SINE Alu 0 312 1 533 290 43 6 chr6 5668461 5668623 -183610931 - MIR SINE MIR -75 187 20 23 68 0 0 chr6 5668901 5668945 -183610609 + AT_rich Low_complexity Low_complexity 1 44 0 1766 159 0 3 chr6 5669597 5669887 -183609667 - AluJb SINE Alu -19 293 5 187 282 68 68 chr6 5670724 5670827 -183608727 + L2 LINE L2 3158 3260 -12 1368 237 90 62 chr6 5670977 5671557 -183607997 - L2 LINE L2 -221 3092 2482 490 283 7 7 chr6 5671560 5671698 -183607856 - MLT1F LTR MaLR -404 138 1 316 236 0 2 chr6 5672680 5672754 -183606800 - MIR SINE MIR -84 124 52 288 223 204 51 chr6 5673356 5673513 -183606041 - L2 LINE L2 -571 2743 2563 501 309 84 50 chr6 5674037 5674357 -183605197 - L2 LINE L2 -1 3271 2941 298 307 111 33 chr6 5676769 5676922 -183602632 - MIR3 SINE MIR -24 184 20 218 317 120 7 chr6 5676994 5677136 -183602418 + MIR SINE MIR 61 218 -44 276 287 67 28 chr6 5678133 5678339 -183601215 - MIR SINE MIR -1 261 2 1739 293 121 36 chr6 5678693 5679255 -183600299 - L1MEd LINE L1 -863 1627 1114 2327 66 33 0 chr6 5679255 5679557 -183599997 - L1PA7 LINE L1 -4 6150 5839 1739 293 121 36 chr6 5679557 5680051 -183599503 - L1MEd LINE L1 -1376 1114 664 189 0 0 0 chr6 5680051 5680072 -183599482 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1739 293 121 36 chr6 5680072 5680335 -183599219 - L1MEd LINE L1 -1826 664 109 1994 130 154 16 chr6 5680369 5680738 -183598816 - MSTA LTR MaLR 0 428 9 279 257 14 40 chr6 5681697 5681771 -183597783 + MIR SINE MIR 16 87 -175 287 315 41 20 chr6 5682285 5682431 -183597123 + MARNA DNA Mariner 196 344 -242 320 356 19 0 chr6 5683104 5683208 -183596346 - MIR SINE MIR -109 153 48 507 307 21 107 chr6 5683214 5683589 -183595965 + L2 LINE L2 2930 3272 0 233 285 220 32 chr6 5683737 5683923 -183595631 + L3 LINE CR1 1259 1479 -98 180 0 0 0 chr6 5685860 5685880 -183593674 + (A)n Simple_repeat Simple_repeat 1 20 0 330 122 0 0 chr6 5686078 5686127 -183593427 - L1MB4 LINE L1 -302 5878 5830 242 182 164 18 chr6 5686137 5686192 -183593362 - MIR SINE MIR -119 143 81 181 169 92 77 chr6 5686138 5686203 -183593351 + MIR3 SINE MIR 131 196 -12 * 280 268 141 64 chr6 5686240 5686460 -183593094 - MIR SINE MIR 0 262 26 1473 159 0 23 chr6 5687272 5687529 -183592025 + AluJo SINE Alu 52 302 -10 526 298 58 6 chr6 5687552 5687723 -183591831 - MIR3 SINE MIR -8 200 21 700 276 43 17 chr6 5688127 5688359 -183591195 - MIR SINE MIR -16 246 9 190 253 242 10 chr6 5689839 5689938 -183589616 + L2 LINE L2 3150 3271 -1 2799 161 61 37 chr6 5690710 5691116 -183588438 - L1MB5 LINE L1 -1 6173 5745 2341 89 0 0 chr6 5691116 5691407 -183588147 - AluSx SINE Alu -21 291 1 2799 161 61 37 chr6 5691407 5691621 -183587933 - L1MB5 LINE L1 -429 5745 5538 718 255 34 24 chr6 5691621 5691829 -183587725 + MIR SINE MIR 43 252 -10 2180 193 22 12 chr6 5692658 5693340 -183586214 - L1MB5 LINE L1 -658 5526 4839 288 77 0 0 chr6 5694443 5694482 -183585072 + (CTG)n Simple_repeat Simple_repeat 1 39 0 234 361 36 36 chr6 5694483 5694649 -183584905 - MIR3 SINE MIR -24 184 19 274 327 30 42 chr6 5694970 5695135 -183584419 + MER5B DNA MER1_type 13 175 -3 1385 161 94 58 chr6 5696799 5696987 -183582567 - MER7A DNA MER2_type -2692 346 141 2476 159 31 2 chr6 5696987 5697403 -183582151 + MSTA LTR MaLR 1 428 0 1385 161 94 58 chr6 5697403 5697543 -183582011 - MER7A DNA MER2_type -2897 141 8 207 330 33 22 chr6 5697624 5697715 -183581839 - MIR SINE MIR -79 183 92 1432 139 28 5 chr6 5697835 5698051 -183581503 + AluJo SINE Alu 86 306 -6 360 269 40 74 chr6 5698396 5698545 -183581009 + MIR SINE MIR 119 262 0 373 335 30 30 chr6 5698558 5698722 -183580832 - MIR3 SINE MIR -5 203 40 218 303 15 0 chr6 5699671 5699737 -183579817 - L2 LINE L2 -49 3223 3157 208 147 0 0 chr6 5700412 5700446 -183579108 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 230 190 172 78 chr6 5700586 5700702 -183578852 + MIR SINE MIR 27 153 -109 1517 203 80 45 chr6 5701441 5701990 -183577564 + L1ME LINE L1 4860 5423 -741 481 183 44 36 chr6 5701988 5702125 -183577429 + L1ME2 LINE L1 5918 6055 -109 * 225 0 0 0 chr6 5702125 5702150 -183577404 + (T)n Simple_repeat Simple_repeat 1 25 0 426 20 0 0 chr6 5702181 5702232 -183577322 + (TC)n Simple_repeat Simple_repeat 2 52 0 807 157 22 30 chr6 5702232 5702366 -183577188 - FLAM_C SINE Alu 0 133 1 564 179 8 8 chr6 5702367 5702484 -183577070 + L1ME2 LINE L1 6039 6155 -9 540 246 63 0 chr6 5703295 5703437 -183576117 + MIR SINE MIR 56 206 -56 7355 51 0 0 chr6 5703514 5704677 -183574877 - L1PA6 LINE L1 0 6154 4995 707 148 15 15 chr6 5704677 5704812 -183574742 + L1MB7 LINE L1 6050 6184 0 341 154 14 42 chr6 5704812 5704894 -183574660 + L1ME LINE L1 5595 5665 -501 189 279 180 8 chr6 5705220 5705342 -183574212 - MER5A DNA MER1_type -3 186 44 2227 201 19 11 chr6 5705479 5705941 -183573613 + MLT1C LTR MaLR 2 467 0 245 211 28 0 chr6 5706694 5706765 -183572789 + CT-rich Low_complexity Low_complexity 1 73 0 244 291 0 0 chr6 5707379 5707434 -183572120 + MIR SINE MIR 7 61 -201 3110 179 91 24 chr6 5707601 5708323 -183571231 + MER21A LTR ERV1 1 771 -160 196 293 83 53 chr6 5708523 5708656 -183570898 - MIR SINE MIR -45 217 81 211 303 40 0 chr6 5709389 5709465 -183570089 - MIR3 SINE MIR -6 202 124 275 258 0 16 chr6 5710055 5710117 -183569437 + MIR SINE MIR 89 149 -113 391 118 24 24 chr6 5710119 5710204 -183569350 - LTR67 LTR ERVL -2 555 471 2668 174 41 6 chr6 5710205 5710739 -183568815 + L1MB5 LINE L1 5572 6124 -50 985 233 41 23 chr6 5711756 5712099 -183567455 - L1MC4 LINE L1 -5 8037 7689 436 205 103 0 chr6 5712099 5712207 -183567347 - L1 LINE L1 -3294 2852 2736 256 326 31 0 chr6 5712256 5712354 -183567200 - L1ME LINE L1 -5625 445 345 345 82 0 0 chr6 5713151 5713200 -183566354 + (CA)n Simple_repeat Simple_repeat 2 50 0 634 197 61 3 chr6 5713617 5713802 -183565752 - MLT1B LTR MaLR 0 390 217 3542 86 2 4 chr6 5713802 5714279 -183565275 - L1PA13 LINE L1 -2 6161 5686 634 197 61 3 chr6 5714279 5714403 -183565151 - MLT1B LTR MaLR -173 217 1 1458 144 164 12 chr6 5714724 5714980 -183564574 + AluY SINE Alu 1 295 -16 5315 146 37 39 chr6 5715111 5715295 -183564259 - L1MA9 LINE L1 0 6312 6129 2512 85 0 0 chr6 5715295 5715601 -183563953 - AluY SINE Alu -5 306 1 5315 146 37 39 chr6 5715601 5716686 -183562868 - L1MA9 LINE L1 -183 6129 5043 251 146 21 0 chr6 5716684 5716732 -183562822 + L1MA9 LINE L1 4989 5037 -1109 * 826 305 71 24 chr6 5716735 5717155 -183562399 + L2 LINE L2 1033 1472 -1842 1986 122 4 4 chr6 5717714 5717992 -183561562 + AluY SINE Alu 1 278 -33 200 35 35 0 chr6 5717992 5718021 -183561533 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 694 272 111 48 chr6 5718234 5718949 -183560605 - L2 LINE L2 -6 3307 2544 558 230 115 48 chr6 5719068 5719277 -183560277 - MER31B LTR ERV1 0 466 244 249 268 28 0 chr6 5719286 5719357 -183560197 - MER31B LTR ERV1 -382 84 12 2843 65 3 3 chr6 5719358 5719712 -183559842 - THE1A LTR MaLR -1 354 1 12311 82 4 1 chr6 5719712 5721287 -183558267 - THE1A-int LTR MaLR 0 1580 1 2789 80 11 0 chr6 5721287 5721638 -183557916 - THE1A LTR MaLR 0 355 1 403 247 123 31 chr6 5721659 5721821 -183557733 - L2 LINE L2 -940 2374 2198 2346 159 7 27 chr6 5721913 5722316 -183557238 + MSTD LTR MaLR 2 396 0 747 219 47 47 chr6 5722543 5722775 -183556779 - MLT1A2 LTR MaLR 0 365 134 283 95 24 0 chr6 5722775 5722817 -183556737 - MLT1A1 LTR MaLR 0 457 415 1333 99 0 0 chr6 5722818 5723010 -183556544 + L1MA2 LINE L1 6113 6304 0 1038 183 46 118 chr6 5723031 5723397 -183556157 - MLT1A1 LTR MaLR -25 340 1 2587 209 32 9 chr6 5723406 5723933 -183555621 - MLT1A1-int LTR MaLR -1 1734 1196 1181 197 13 26 chr6 5723935 5724169 -183555385 - MLT2B3 LTR ERVL -237 317 87 387 188 0 0 chr6 5724246 5724315 -183555239 - MLT2B3 LTR ERVL -484 70 2 765 128 78 35 chr6 5724318 5724459 -183555095 - MLT1A2 LTR MaLR -227 147 1 2237 122 0 0 chr6 5724604 5724908 -183554646 - AluSx SINE Alu -8 304 1 978 185 0 0 chr6 5724968 5725130 -183554424 - FAM SINE Alu -13 162 1 420 71 0 0 chr6 5725605 5725661 -183553893 + (TG)n Simple_repeat Simple_repeat 1 56 0 1886 77 0 0 chr6 5725661 5725883 -183553671 - AluSq SINE Alu -91 222 1 466 277 69 23 chr6 5725939 5726190 -183553364 - L1ME LINE L1 -317 5804 5584 234 0 0 0 chr6 5727785 5727811 -183551743 + (TC)n Simple_repeat Simple_repeat 1 26 0 366 340 39 0 chr6 5728985 5729188 -183550366 + L1ME3A LINE L1 5727 5937 -233 1552 194 154 19 chr6 5729207 5729254 -183550300 + MSTA LTR MaLR 1 40 -388 2301 130 13 24 chr6 5729254 5729632 -183549922 + THE1C LTR MaLR 1 374 -1 1552 194 154 19 chr6 5729632 5729961 -183549593 + MSTA LTR MaLR 40 428 0 9868 160 25 2 chr6 5729961 5731574 -183547980 + THE1C-int LTR MaLR 1 1650 -1 1913 170 154 0 chr6 5731581 5731952 -183547602 + MSTA LTR MaLR 1 428 0 315 263 0 40 chr6 5732124 5732223 -183547331 + L1MC5 LINE L1 7847 7941 -20 266 232 21 0 chr6 5733074 5733169 -183546385 + CT-rich Low_complexity Low_complexity 1 97 0 225 329 102 7 chr6 5733242 5733379 -183546175 + L2 LINE L2 3121 3270 -2 576 116 0 0 chr6 5733380 5733475 -183546079 + (GGAA)n Simple_repeat Simple_repeat 1 95 0 4558 184 15 3 chr6 5733673 5734551 -183545003 + L1MB3 LINE L1 5273 6160 -23 1044 216 73 85 chr6 5735089 5735468 -183544086 + MLT2D LTR ERVL 1 376 -38 225 0 0 0 chr6 5735468 5735493 -183544061 + (CA)n Simple_repeat Simple_repeat 2 26 0 1044 216 73 85 chr6 5735493 5735524 -183544030 + MLT2D LTR ERVL 376 406 -8 314 232 77 97 chr6 5735691 5735898 -183543656 - L2 LINE L2 -217 3055 2853 1914 201 40 25 chr6 5736145 5736671 -183542883 + MER74A LTR ERVL 1 534 -24 13421 115 37 16 chr6 5737017 5739172 -183540382 - Tigger1 DNA MER2_type -219 2199 1 4194 145 26 0 chr6 5743237 5743926 -183535628 - L1MC1 LINE L1 -5 6328 5622 522 266 40 40 chr6 5743953 5744126 -183535428 + MER5B DNA MER1_type 4 176 -2 326 222 16 0 chr6 5744275 5744338 -183535216 + L1MCa LINE L1 2005 2068 -4358 366 23 0 0 chr6 5744355 5744398 -183535156 + (GA)n Simple_repeat Simple_repeat 2 44 0 1743 133 0 72 chr6 5744398 5744545 -183535009 - AluJo SINE Alu -40 272 155 2055 107 0 38 chr6 5744545 5744835 -183534719 - AluSg SINE Alu -12 298 20 1743 133 0 72 chr6 5744835 5744980 -183534574 - AluJo SINE Alu -157 155 1 2223 89 0 3 chr6 5745405 5745687 -183533867 - AluSg SINE Alu -16 294 14 273 311 10 10 chr6 5746011 5746114 -183533440 + C-rich Low_complexity Low_complexity 1 103 0 4641 177 17 6 chr6 5747153 5748039 -183531515 + L1MB3 LINE L1 5273 6168 -15 2257 99 3 0 chr6 5749653 5749946 -183529608 - AluSq SINE Alu -19 294 1 257 0 30 0 chr6 5750115 5750148 -183529406 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4749 138 87 11 chr6 5750162 5750194 -183529360 + L1MA7 LINE L1 5282 5310 -981 2285 137 8 27 chr6 5750194 5750483 -183529071 + MER47A DNA MER2_type 1 283 -2040 2104 149 0 0 chr6 5750483 5750792 -183528762 - AluJb SINE Alu -3 309 1 2285 137 8 27 chr6 5750792 5750875 -183528679 + MER47A DNA MER2_type 283 366 0 4749 138 87 11 chr6 5750875 5751776 -183527778 + L1MA7 LINE L1 5310 6286 -5 411 260 31 8 chr6 5753935 5754062 -183525492 - MIR SINE MIR -109 153 24 293 238 60 46 chr6 5754238 5754389 -183525165 + Charlie7 DNA MER1_type 2444 2596 -16 318 239 12 153 chr6 5755002 5755165 -183524389 + MIR SINE MIR 117 256 -6 255 200 212 12 chr6 5755174 5755259 -183524295 + MIR SINE MIR 65 166 -96 317 95 0 0 chr6 5755262 5755304 -183524250 - 5S rRNA rRNA -79 42 1 564 332 45 7 chr6 5755376 5755611 -183523943 + MIR SINE MIR 17 259 -3 558 282 37 31 chr6 5755636 5755776 -183523778 - MIR SINE MIR -39 223 80 2034 133 41 0 chr6 5755776 5756070 -183523484 + AluSx SINE Alu 1 306 -6 558 282 37 31 chr6 5756070 5756092 -183523462 - MIR SINE MIR -182 80 60 1794 175 3 19 chr6 5756918 5757226 -183522328 + AluJb SINE Alu 2 304 -8 788 144 6 18 chr6 5757226 5757393 -183522161 + GA-rich Low_complexity Low_complexity 1 165 0 228 306 113 16 chr6 5757475 5757599 -183521955 + MIR SINE MIR 73 208 -54 269 189 11 111 chr6 5757876 5757966 -183521588 + MIR SINE MIR 82 162 -100 258 188 34 26 chr6 5758054 5758171 -183521383 + (TAA)n Simple_repeat Simple_repeat 1 118 0 6992 61 12 45 chr6 5759668 5760649 -183518905 - SVA Other Other -5 1381 433 5885 67 27 12 chr6 5760662 5761481 -183518073 - SVA Other Other -555 831 1 403 268 36 7 chr6 5761488 5761626 -183517928 - L1ME LINE L1 -538 5583 5442 2139 88 4 0 chr6 5761751 5762013 -183517541 + AluSq SINE Alu 1 263 -50 191 59 0 29 chr6 5762033 5762067 -183517487 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 360 185 15 0 chr6 5762850 5762915 -183516639 + MIR SINE MIR 82 147 -61 296 284 191 31 chr6 5763255 5763417 -183516137 - MIR SINE MIR -54 208 21 233 229 9 0 chr6 5763848 5763953 -183515601 + (AGGTG)n Simple_repeat Simple_repeat 5 110 0 211 240 16 0 chr6 5763967 5764092 -183515462 + (AGGTG)n Simple_repeat Simple_repeat 3 129 0 213 243 43 0 chr6 5764114 5764184 -183515370 + (AGGTG)n Simple_repeat Simple_repeat 3 75 0 503 289 64 6 chr6 5765139 5765295 -183514259 + MIR3 SINE MIR 37 201 -7 180 233 200 44 chr6 5766201 5766291 -183513263 + MIR SINE MIR 41 144 -118 2615 244 41 21 chr6 5766840 5767645 -183511909 - L1ME3A LINE L1 -76 6094 5274 403 252 132 38 chr6 5768531 5768690 -183510864 - L2 LINE L2 -1 3312 3139 1298 266 51 58 chr6 5769415 5770021 -183509533 - MLT1L LTR MaLR 0 615 14 302 241 198 19 chr6 5770405 5770541 -183509013 + MIR SINE MIR 14 176 -86 241 137 196 0 chr6 5770850 5770901 -183508653 - MLT1J1 LTR MaLR -385 61 1 182 321 38 0 chr6 5771123 5771176 -183508378 + L2 LINE L2 3205 3259 -13 400 228 117 0 chr6 5771456 5771601 -183507953 + LTR16C LTR ERVL 330 491 0 527 282 19 0 chr6 5772343 5772499 -183507055 + LTR16A LTR ERVL 111 269 -181 322 273 111 0 chr6 5772547 5772646 -183506908 + LTR16A LTR ERVL 341 450 0 388 293 76 19 chr6 5773018 5773175 -183506379 + L2 LINE L2 2503 2668 -646 387 361 47 0 chr6 5773752 5773943 -183505611 + L2 LINE L2 3106 3305 -8 254 312 192 16 chr6 5774522 5774647 -183504907 - MIR3 SINE MIR -29 179 33 204 242 15 15 chr6 5774671 5774737 -183504817 + CT-rich Low_complexity Low_complexity 2 67 0 21 36 0 0 chr6 5776099 5776127 -183503427 + AT_rich Low_complexity Low_complexity 1 28 0 993 261 92 11 chr6 5776629 5776974 -183502580 + MLT1J LTR MaLR 1 373 -138 1899 144 89 53 chr6 5776974 5777060 -183502494 - MLT2D LTR ERVL -2 518 437 243 0 0 0 chr6 5777060 5777087 -183502467 + (CA)n Simple_repeat Simple_repeat 2 28 0 1899 144 89 53 chr6 5777087 5777392 -183502162 - MLT2D LTR ERVL -83 437 38 1958 163 12 65 chr6 5777392 5777502 -183502052 + MLT1B LTR MaLR 1 115 -275 1919 90 12 102 chr6 5777502 5777834 -183501720 + AluSx SINE Alu 1 302 -10 1958 163 12 65 chr6 5777834 5778135 -183501419 + MLT1B LTR MaLR 115 390 0 1899 144 89 53 chr6 5778135 5778175 -183501379 - MLT2D LTR ERVL -482 38 1 313 327 170 44 chr6 5778305 5778757 -183500797 - L2 LINE L2 -570 2744 2236 310 326 28 14 chr6 5779371 5779515 -183500039 + MIR SINE MIR 109 254 -8 548 297 50 41 chr6 5780417 5780636 -183498918 - MIR SINE MIR -26 236 16 4748 134 7 67 chr6 5781612 5782559 -183496995 - L1MB3 LINE L1 -9 6174 5284 229 277 62 0 chr6 5782605 5782670 -183496884 - MIR SINE MIR -117 145 77 7632 37 0 0 chr6 5782701 5783957 -183495597 - L1PA5 LINE L1 0 6154 4900 6609 167 36 10 chr6 5784204 5784824 -183494730 + L1MA9 LINE L1 4022 4624 -1688 2178 140 0 0 chr6 5784824 5785124 -183494430 + AluSx SINE Alu 1 300 -12 6609 167 36 10 chr6 5785124 5786667 -183492887 + L1MA9 LINE L1 4624 6312 0 972 197 55 144 chr6 5786692 5787355 -183492199 + MLT1D LTR MaLR 14 505 0 563 225 110 0 chr6 5787460 5787633 -183491921 - MIR SINE MIR 0 262 71 405 185 12 12 chr6 5788177 5788258 -183491296 + L1MB1 LINE L1 5685 5765 -401 693 148 58 26 chr6 5788258 5788406 -183491148 + L1MB8 LINE L1 6018 6177 -1 1425 182 28 18 chr6 5789166 5789370 -183490184 + MER33 DNA MER1_type 1 201 -2384 2071 119 69 28 chr6 5789370 5789730 -183489824 + THE1C LTR MaLR 1 375 0 1425 182 28 18 chr6 5789730 5789856 -183489698 + MER33 DNA MER1_type 201 324 0 231 357 49 16 chr6 5790239 5790424 -183489130 - L2 LINE L2 -971 2343 2153 572 256 111 14 chr6 5790529 5790736 -183488818 + MLT1G LTR MaLR 61 287 -303 640 262 6 17 chr6 5790770 5790942 -183488612 + MLT1G LTR MaLR 421 590 0 190 287 178 0 chr6 5790945 5791046 -183488508 + MIR SINE MIR 134 252 -10 264 322 134 25 chr6 5791096 5791379 -183488175 - L3 LINE CR1 -256 1321 1008 717 319 58 25 chr6 5791429 5791705 -183487849 - L3 LINE CR1 -824 753 469 326 157 0 0 chr6 5791968 5792019 -183487535 + L1MB1 LINE L1 5817 5867 -301 4347 166 43 15 chr6 5792320 5793134 -183486420 + L1MA10 LINE L1 5487 6323 -11 1978 130 0 11 chr6 5793149 5793434 -183486120 - AluSx SINE Alu -22 290 9 213 156 0 22 chr6 5793620 5793665 -183485889 + T-rich Low_complexity Low_complexity 6 49 0 438 276 184 6 chr6 5793739 5793913 -183485641 + MIR SINE MIR 29 233 -29 195 292 91 136 chr6 5794205 5794359 -183485195 - MER5A DNA MER1_type 0 189 43 323 253 0 0 chr6 5794955 5795030 -183484524 - L1ME3A LINE L1 -311 5859 5785 461 239 26 9 chr6 5795044 5795157 -183484397 - L1MA10 LINE L1 -2 6332 6218 663 252 47 51 chr6 5795220 5795474 -183484080 - L1ME3A LINE L1 -393 5777 5525 824 286 118 18 chr6 5795487 5795945 -183483609 - L1ME3A LINE L1 -1692 4454 3951 180 246 185 0 chr6 5796113 5796178 -183483376 - L2 LINE L2 0 3313 3237 844 304 101 7 chr6 5796411 5796849 -183482705 - L3 LINE CR1 -2 1575 1097 181 339 0 0 chr6 5797308 5797364 -183482190 + MIR SINE MIR 78 133 -129 1855 168 61 82 chr6 5798781 5799075 -183480479 - MLT1C LTR MaLR 0 467 183 2061 120 0 49 chr6 5799075 5799401 -183480153 - AluSg SINE Alu 0 310 1 1855 168 61 82 chr6 5799401 5799547 -183480007 - MLT1C LTR MaLR -284 183 36 234 318 64 0 chr6 5799720 5799830 -183479724 + L3b LINE CR1 1239 1355 -228 279 0 0 0 chr6 5800325 5800356 -183479198 + (CA)n Simple_repeat Simple_repeat 2 32 0 555 340 40 8 chr6 5800652 5801005 -183478549 - LTR16C LTR ERVL 0 491 128 725 152 0 0 chr6 5801249 5801348 -183478206 + FLAM_A SINE Alu 1 99 -43 1019 345 62 24 chr6 5801639 5802314 -183477240 - ERVL LTR ERVL -719 5045 4345 26 0 0 0 chr6 5802330 5802356 -183477198 + AT_rich Low_complexity Low_complexity 1 26 0 2235 303 66 40 chr6 5802362 5804559 -183474995 - ERVL LTR ERVL -1536 4228 1902 690 354 97 8 chr6 5804851 5805224 -183474330 - ERVL LTR ERVL -3531 1465 1060 2395 94 0 0 chr6 5805958 5806265 -183473289 + AluY SINE Alu 1 307 -4 250 234 73 40 chr6 5806524 5806648 -183472906 + L1ME LINE L1 40 167 -5903 347 234 0 13 chr6 5806886 5806963 -183472591 + L2 LINE L2 3229 3304 -9 409 227 62 31 chr6 5807217 5807345 -183472209 + MIR SINE MIR 65 196 -66 246 242 65 0 chr6 5807347 5807409 -183472145 - L2 LINE L2 -1 3312 3247 275 209 166 92 chr6 5807413 5807576 -183471978 - L2 LINE L2 0 3313 3139 1362 171 23 5 chr6 5807576 5807989 -183471565 + MLT2B2 LTR ERVL 1 515 0 597 292 50 7 chr6 5809630 5809907 -183469647 - L1ME4a LINE L1 -1 6120 5832 1077 291 93 39 chr6 5809935 5810737 -183468817 + L2 LINE L2 2461 3308 -5 386 244 123 40 chr6 5810738 5810933 -183468621 - L1M2 LINE L1 -334 5787 5596 43276 33 22 13 chr6 5810941 5816708 -183462846 - L1PA2 LINE L1 -2 6153 321 1461 18 0 0 chr6 5816708 5816873 -183462681 - AluYb8 SINE Alu 0 318 154 43276 33 22 13 chr6 5816873 5817195 -183462359 - L1PA2 LINE L1 -5834 321 4 631 284 89 4 chr6 5817808 5818044 -183461510 - MIR SINE MIR -3 259 4 1919 212 128 38 chr6 5818058 5818582 -183460972 - MLT1G LTR MaLR -6 584 14 543 128 0 64 chr6 5818586 5818680 -183460874 - L1MC1 LINE L1 -6 6327 6240 2245 94 17 7 chr6 5818690 5818989 -183460565 - AluSc SINE Alu 0 309 8 614 305 28 59 chr6 5820158 5820494 -183459060 + MLT1I LTR MaLR 64 390 -19 1079 261 5 0 chr6 5820494 5820712 -183458842 + MER58A DNA MER1_type 4 222 -2 614 305 28 59 chr6 5820712 5820732 -183458822 + MLT1I LTR MaLR 390 409 0 189 235 0 0 chr6 5820844 5820878 -183458676 - L2 LINE L2 -14 3258 3225 189 0 0 0 chr6 5821530 5821551 -183458003 + (T)n Simple_repeat Simple_repeat 1 21 0 528 16 0 0 chr6 5822184 5822245 -183457309 + (CA)n Simple_repeat Simple_repeat 2 62 0 216 0 0 0 chr6 5822244 5822268 -183457286 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 428 191 57 77 chr6 5822541 5822724 -183456830 + MER58 DNA MER1_type 43 2419 -1 1992 268 77 70 chr6 5822746 5824900 -183454654 - HERV16 LTR ERVL -2762 2234 1 1312 253 93 23 chr6 5824907 5825303 -183454251 - LTR16A LTR ERVL -10 440 17 201 267 93 0 chr6 5825329 5825404 -183454150 + MIR SINE MIR 60 141 -67 260 236 112 22 chr6 5825413 5825502 -183454052 - L1ME4a LINE L1 -17 6104 6008 292 131 51 35 chr6 5825896 5825975 -183453579 + L1PB4 LINE L1 5684 5758 -396 205 228 25 0 chr6 5825985 5826064 -183453490 + (CA)n Simple_repeat Simple_repeat 1 81 0 2267 128 56 11 chr6 5826064 5826422 -183453132 + L1PB4 LINE L1 5783 6156 0 758 251 25 5 chr6 5826509 5826708 -183452846 - L1ME4a LINE L1 -393 5728 5526 2134 118 0 10 chr6 5827924 5828221 -183451333 - AluSq SINE Alu -19 294 1 180 77 0 0 chr6 5828312 5828338 -183451216 + (TATATG)n Simple_repeat Simple_repeat 3 28 0 279 122 0 0 chr6 5828434 5828483 -183451071 + (GA)n Simple_repeat Simple_repeat 2 50 0 605 298 164 3 chr6 5828790 5829119 -183450435 - Tigger8 DNA MER2_type -174 492 111 189 0 0 0 chr6 5829166 5829187 -183450367 + (TG)n Simple_repeat Simple_repeat 2 22 0 1204 202 68 46 chr6 5830495 5830983 -183448571 - MLT1F LTR MaLR 0 567 20 284 184 79 26 chr6 5831193 5831269 -183448285 + LTR50 LTR ERVL 716 795 0 328 298 0 11 chr6 5831345 5831439 -183448115 - MIR SINE MIR -121 141 49 2903 155 33 26 chr6 5831892 5832383 -183447171 + L1PA15 LINE L1 5670 6163 -2 358 348 123 40 chr6 5832819 5833046 -183446508 - MIR SINE MIR -1 261 16 393 291 10 0 chr6 5833497 5833600 -183445954 + MER5A DNA MER1_type 67 170 -19 562 271 66 17 chr6 5833661 5833842 -183445712 + MIR SINE MIR 34 223 -39 21 36 0 0 chr6 5834222 5834250 -183445304 + AT_rich Low_complexity Low_complexity 1 28 0 1158 291 49 51 chr6 5834734 5835163 -183444391 - L2 LINE L2 -66 3247 2832 2454 185 17 77 chr6 5835163 5835697 -183443857 - MLT1D LTR MaLR -1 504 3 1158 291 49 51 chr6 5835697 5836076 -183443478 - L2 LINE L2 -481 2832 2454 246 214 54 0 chr6 5836293 5836349 -183443205 - LTR50 LTR ERVL 0 795 737 323 231 100 23 chr6 5836349 5836479 -183443075 - L1MEc LINE L1 -4544 1852 1713 882 49 0 0 chr6 5836503 5836605 -183442949 - L1PA7 LINE L1 -3 6151 6050 372 261 22 0 chr6 5836607 5836699 -183442855 - L2 LINE L2 -644 2670 2577 32713 101 7 23 chr6 5836731 5843099 -183436455 - L1PA7 LINE L1 -108 6361 4 1074 255 50 61 chr6 5843104 5843326 -183436228 - L1MEc LINE L1 -4678 1718 1495 1627 174 44 7 chr6 5843326 5843624 -183435930 - 7SLRNA srpRNA srpRNA -9 311 3 1074 255 50 61 chr6 5843624 5843943 -183435611 - L1MEc LINE L1 -4901 1495 1183 355 220 28 37 chr6 5843958 5844067 -183435487 + LTR16B LTR ERVL 355 462 -2 1155 300 29 40 chr6 5844101 5844657 -183434897 - L1MEc LINE L1 -5637 759 210 1028 175 0 16 chr6 5844806 5845000 -183434554 + L1MB7 LINE L1 4976 5166 -980 2235 173 41 12 chr6 5845000 5845416 -183434138 + L1MB3 LINE L1 5749 6176 -7 4125 202 45 12 chr6 5845437 5846433 -183433121 + L1MB7 LINE L1 5149 6173 -11 280 222 127 16 chr6 5846472 5846535 -183433019 + L2 LINE L2 3204 3273 -40 21 0 0 0 chr6 5846625 5846646 -183432908 + AT_rich Low_complexity Low_complexity 1 21 0 572 285 80 10 chr6 5846821 5847021 -183432533 + MIR SINE MIR 48 261 -1 321 26 0 0 chr6 5847683 5847722 -183431832 + U5 snRNA snRNA 6 44 -72 196 298 0 0 chr6 5848395 5848442 -183431112 + MIR SINE MIR 215 261 -1 423 202 0 0 chr6 5848446 5848540 -183431014 + (CCA)n Simple_repeat Simple_repeat 1 94 0 436 346 39 43 chr6 5848713 5849146 -183430408 + L3 LINE CR1 358 866 -711 2494 167 55 4 chr6 5849229 5849685 -183429869 + L1MD1 LINE L1 5565 6043 -199 1525 213 66 26 chr6 5849685 5850032 -183429522 - MSTD LTR MaLR 0 396 36 1083 163 41 5 chr6 5850039 5850230 -183429324 + L1MD1 LINE L1 6039 6237 -1 198 0 0 0 chr6 5850230 5850252 -183429302 + (CA)n Simple_repeat Simple_repeat 1 22 0 837 325 45 3 chr6 5850274 5850560 -183428994 + L3 LINE CR1 976 1273 -304 2156 162 34 3 chr6 5851034 5851386 -183428168 - MLT1A1 LTR MaLR 0 365 3 1741 189 0 3 chr6 5852221 5852713 -183426841 - AluJo SINE Alu 0 312 1 530 289 0 7 chr6 5853010 5853145 -183426409 - MER94 DNA DNA 0 134 1 251 231 70 124 chr6 5853633 5853819 -183425735 + L2 LINE L2 3015 3190 -82 199 274 20 0 chr6 5854368 5854419 -183425135 - L2 LINE L2 -5 3267 3216 1318 234 80 27 chr6 5854556 5855060 -183424494 + MLT1E LTR MaLR 102 593 0 685 257 50 94 chr6 5855108 5855470 -183424084 + LTR16A LTR ERVL 105 450 0 222 310 0 14 chr6 5855670 5855741 -183423813 - MIR3 SINE MIR -27 181 112 310 299 0 0 chr6 5856188 5856275 -183423279 - MIR SINE MIR -26 236 150 1907 188 39 39 chr6 5857147 5857562 -183421992 - MLT1D LTR MaLR 0 505 91 870 250 94 58 chr6 5858361 5858721 -183420833 - MLT1J2 LTR MaLR 0 450 78 347 231 34 60 chr6 5859983 5860100 -183419454 + MIR SINE MIR 49 162 -100 925 313 63 11 chr6 5860496 5860969 -183418585 + L2 LINE L2 2014 2511 -803 238 275 165 0 chr6 5861405 5861514 -183418040 + HsTC2 DNA Tc2 1 127 -1771 2779 208 59 0 chr6 5861530 5862121 -183417433 + HsTC2 DNA Tc2 1273 1898 0 215 289 132 18 chr6 5862253 5862367 -183417187 + L2 LINE L2 3187 3313 0 65 74 0 0 chr6 5863830 5863965 -183415589 + AT_rich Low_complexity Low_complexity 1 135 0 489 272 43 19 chr6 5863987 5864149 -183415405 - MIR3 SINE MIR -9 199 34 357 278 75 100 chr6 5864292 5864379 -183415175 - Charlie8 DNA MER1_type -106 235 147 1747 160 3 39 chr6 5864379 5864685 -183414869 - AluJb SINE Alu 0 312 18 357 278 75 100 chr6 5864685 5864838 -183414716 - Charlie8 DNA MER1_type -194 147 1 2065 109 0 7 chr6 5864856 5865202 -183414352 + AluSg SINE Alu 1 344 0 635 246 78 47 chr6 5865929 5866161 -183413393 - Charlie8 DNA MER1_type -2177 240 2 356 311 20 27 chr6 5867467 5867615 -183411939 + L2 LINE L2 2343 2489 -825 442 214 127 8 chr6 5867732 5867858 -183411696 - MER103 DNA DNA -7 159 19 257 358 45 11 chr6 5868013 5868192 -183411362 + L2 LINE L2 2601 2785 -529 1024 238 135 67 chr6 5868329 5868855 -183410699 + L1MEc LINE L1 1297 1858 -4538 9817 109 8 0 chr6 5868948 5870223 -183409331 - HSMAR1 DNA Mariner 0 1287 3 1719 100 4 21 chr6 5871306 5871547 -183408007 + AluSc SINE Alu 63 299 -10 2294 136 87 0 chr6 5873502 5873893 -183405661 - MSTB1 LTR MaLR 0 432 8 435 344 60 5 chr6 5875435 5875650 -183403904 - Charlie8 DNA MER1_type -2136 281 55 309 305 181 41 chr6 5876981 5877446 -183402108 + L2 LINE L2 2446 2975 -339 302 279 52 19 chr6 5878860 5879014 -183400540 + L1MC4a LINE L1 5768 5926 -1882 282 298 25 19 chr6 5879193 5879351 -183400203 + L1MC4a LINE L1 5768 5926 -1882 2201 116 0 0 chr6 5881218 5881521 -183398033 + AluY SINE Alu 1 303 -8 1211 157 101 28 chr6 5882318 5882566 -183396988 + L1MD3 LINE L1 7730 7995 0 183 235 20 0 chr6 5882858 5882909 -183396645 + L2 LINE L2 3220 3271 -1 727 110 20 0 chr6 5883623 5883723 -183395831 + AluSg/x SINE Alu 203 304 -5 190 311 33 82 chr6 5884124 5884246 -183395308 + MIR SINE MIR 30 145 -63 284 314 137 10 chr6 5884304 5884406 -183395148 + MIR SINE MIR 30 144 -64 283 283 43 0 chr6 5885951 5886043 -183393511 - MIR SINE MIR -13 249 154 467 57 71 0 chr6 5886044 5886114 -183393440 - AluSp/q SINE Alu -12 301 227 246 61 0 0 chr6 5886114 5886147 -183393407 - Alu SINE Alu -269 33 1 314 352 110 0 chr6 5886149 5886294 -183393260 - MIR SINE MIR -100 162 2 391 285 86 56 chr6 5887484 5887821 -183391733 - MLT1I LTR MaLR 0 409 63 213 154 0 0 chr6 5889505 5889544 -183390010 + (TA)n Simple_repeat Simple_repeat 1 39 0 218 208 21 0 chr6 5889647 5889695 -183389859 - L2 LINE L2 0 3313 3265 2370 85 0 16 chr6 5890061 5890377 -183389177 - AluY SINE Alu 0 311 1 309 229 16 41 chr6 5891001 5891129 -183388425 - MIR SINE MIR -18 190 67 2129 115 3 3 chr6 5891130 5891416 -183388138 + AluSx SINE Alu 1 286 -26 328 116 261 0 chr6 5891437 5891506 -183388048 + L1PA14 LINE L1 6075 6161 0 23 33 0 0 chr6 5892066 5892096 -183387458 + AT_rich Low_complexity Low_complexity 1 30 0 423 271 57 36 chr6 5892409 5892549 -183387005 + MIR SINE MIR 2 144 -118 1417 13 0 7 chr6 5893089 5893244 -183386310 + L1PA6 LINE L1 5995 6148 -6 789 189 24 18 chr6 5893363 5893532 -183386022 + MER5B DNA MER1_type 7 176 -2 426 278 23 79 chr6 5894082 5894272 -183385282 - MIR SINE MIR -60 148 11 1227 206 39 123 chr6 5894576 5895063 -183384491 + L1MC5 LINE L1 6692 7122 -839 2217 85 3 10 chr6 5895063 5895368 -183384186 + AluSp SINE Alu 1 303 -10 1227 206 39 123 chr6 5895368 5895476 -183384078 + L1MC5 LINE L1 7122 7237 -724 277 219 55 0 chr6 5895623 5895696 -183383858 + L1MC5 LINE L1 7311 7387 -574 25 0 0 0 chr6 5895948 5895973 -183383581 + AT_rich Low_complexity Low_complexity 1 25 0 538 288 100 4 chr6 5896274 5896503 -183383051 + L2 LINE L2 1452 1702 -1612 659 184 14 35 chr6 5896512 5896653 -183382901 + L1PA16 LINE L1 6027 6164 -2 468 218 29 24 chr6 5896931 5897101 -183382453 + L1 LINE L1 3128 3298 -2848 745 231 13 70 chr6 5899412 5899636 -183379918 + L1 LINE L1 3289 3493 -2653 875 165 0 0 chr6 5899636 5899769 -183379785 + FLAM_A SINE Alu 1 133 0 745 231 13 70 chr6 5899769 5899842 -183379712 + L1 LINE L1 3493 3569 -2577 2853 128 5 25 chr6 5900067 5900139 -183379415 + MER83 LTR ERV1 1 73 -375 2070 100 0 77 chr6 5900139 5900478 -183379076 + AluSq SINE Alu 1 313 0 2853 128 5 25 chr6 5900478 5900844 -183378710 + MER83 LTR ERV1 73 430 -18 353 364 102 62 chr6 5900897 5901172 -183378382 + L2 LINE L2 2985 3270 -2 2004 95 0 7 chr6 5901986 5902313 -183377241 + AluSc SINE Alu 1 325 0 1767 242 122 33 chr6 5902394 5902930 -183376624 - MLT1E2 LTR MaLR 0 626 34 2154 102 10 0 chr6 5902930 5903225 -183376329 + AluSg SINE Alu 1 298 -12 1767 242 122 33 chr6 5903225 5903263 -183376291 - MLT1E2 LTR MaLR -592 34 1 317 313 68 68 chr6 5904110 5904273 -183375281 + L1ME4a LINE L1 5827 5989 -132 398 228 0 22 chr6 5904882 5904974 -183374580 + FLAM_A SINE Alu 44 133 0 278 242 63 90 chr6 5905122 5905345 -183374209 - HAL1 LINE L1 -1153 1354 1138 1325 175 10 31 chr6 5905378 5905685 -183373869 + MLT1A1 LTR MaLR 1 373 -1 290 303 49 25 chr6 5905689 5905811 -183373743 - LTR16C LTR ERVL -158 333 209 21 36 0 0 chr6 5905900 5905928 -183373626 + AT_rich Low_complexity Low_complexity 1 28 0 556 183 48 48 chr6 5906070 5906196 -183373358 + L1MC4 LINE L1 7599 7724 -318 345 203 0 0 chr6 5907031 5907090 -183372464 - L2 LINE L2 0 3313 3255 1789 158 10 0 chr6 5907296 5907587 -183371967 + AluJo SINE Alu 1 294 -18 1143 194 19 0 chr6 5907680 5907891 -183371663 - MER20 DNA MER1_type -4 215 1 1884 141 7 0 chr6 5908446 5908736 -183370818 + AluSp SINE Alu 1 292 -21 364 281 71 52 chr6 5909034 5909244 -183370310 - L2 LINE L2 -228 3085 2872 615 278 139 4 chr6 5911061 5911291 -183368263 + MIR SINE MIR 2 262 0 495 231 62 36 chr6 5911561 5911759 -183367795 + LTR33A LTR ERVL 26 175 -348 1688 161 3 16 chr6 5912043 5912354 -183367200 + AluJo SINE Alu 1 307 -5 2571 219 15 9 chr6 5912448 5912983 -183366571 - MLT1F LTR MaLR -2 540 3 395 340 36 69 chr6 5913557 5914104 -183365450 - L2 LINE L2 -38 3234 2705 224 254 0 48 chr6 5914436 5914499 -183365055 - MIR SINE MIR -8 254 195 192 125 0 0 chr6 5914720 5914752 -183364802 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr6 5916195 5916219 -183363335 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1590 207 63 67 chr6 5916426 5916933 -183362621 - MLT1D LTR MaLR 0 505 1 610 279 56 23 chr6 5917030 5917245 -183362309 + MIR SINE MIR 39 260 -2 447 336 27 55 chr6 5917938 5918194 -183361360 + L1MC/D LINE L1 5511 5759 -2049 616 207 166 24 chr6 5918922 5919091 -183360463 - MIR SINE MIR -50 212 20 22 0 0 0 chr6 5922015 5922037 -183357517 + GC_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 5922841 5922871 -183356683 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr6 5923443 5923475 -183356079 + AT_rich Low_complexity Low_complexity 1 32 0 319 289 11 56 chr6 5924454 5924634 -183354920 + CT-rich Low_complexity Low_complexity 5 176 0 186 200 0 0 chr6 5925320 5925355 -183354199 + L2 LINE L2 3150 3184 -88 234 0 0 0 chr6 5925504 5925530 -183354024 + (T)n Simple_repeat Simple_repeat 1 26 0 219 322 0 41 chr6 5927537 5927658 -183351896 + CT-rich Low_complexity Low_complexity 1 116 0 183 194 28 0 chr6 5927844 5927880 -183351674 + L2 LINE L2 3276 3312 -1 189 0 0 0 chr6 5928369 5928390 -183351164 + (GGA)n Simple_repeat Simple_repeat 1 21 0 440 117 13 0 chr6 5931662 5931739 -183347815 + (GA)n Simple_repeat Simple_repeat 2 79 0 288 0 0 0 chr6 5932348 5932380 -183347174 + (CA)n Simple_repeat Simple_repeat 1 32 0 239 238 38 0 chr6 5932382 5932462 -183347092 + (CG)n Simple_repeat Simple_repeat 1 83 0 230 203 0 14 chr6 5932757 5932826 -183346728 + (CA)n Simple_repeat Simple_repeat 2 69 0 25 0 0 0 chr6 5934058 5934083 -183345471 + GC_rich Low_complexity Low_complexity 1 25 0 197 275 0 58 chr6 5934581 5934650 -183344904 + MIR3 SINE MIR 133 197 -11 2026 96 48 0 chr6 5935512 5935804 -183343750 + AluSq SINE Alu 1 306 -7 1192 241 68 51 chr6 5936041 5936451 -183343103 + L1MC4 LINE L1 7624 8040 -2 350 280 206 41 chr6 5936462 5936680 -183342874 + L1M4 LINE L1 4980 5233 -913 378 0 0 0 chr6 5936718 5936760 -183342794 + (CA)n Simple_repeat Simple_repeat 2 43 0 2154 271 101 24 chr6 5936838 5937717 -183341837 - L1MC4 LINE L1 -459 7583 6637 691 292 111 48 chr6 5937996 5938473 -183341081 - L1MEc LINE L1 -3445 3095 2649 1918 158 3 0 chr6 5938473 5938777 -183340777 + AluSx SINE Alu 1 305 -7 691 292 111 48 chr6 5938777 5939331 -183340223 - L1MEc LINE L1 -3891 2649 2025 571 307 112 68 chr6 5939333 5939618 -183339936 - L1MEc LINE L1 -4604 1936 1626 959 164 31 0 chr6 5939618 5939777 -183339777 - FRAM SINE Alu -2 164 1 571 307 112 68 chr6 5939777 5939901 -183339653 - L1MEc LINE L1 -4914 1626 1509 5879 146 28 9 chr6 5939931 5940434 -183339120 - L1MA9 LINE L1 0 6312 5820 285 89 0 0 chr6 5940434 5940479 -183339075 + (CA)n Simple_repeat Simple_repeat 1 45 0 5879 146 28 9 chr6 5940479 5941601 -183337953 - L1MA9 LINE L1 -492 5820 4655 7094 158 92 68 chr6 5941813 5942277 -183337277 - L1MC3 LINE L1 0 7785 7334 1256 190 99 74 chr6 5942277 5942640 -183336914 + MLT1A2 LTR MaLR 1 372 -2 7094 158 92 68 chr6 5942640 5942735 -183336819 - L1MC3 LINE L1 -451 7334 7243 272 250 0 25 chr6 5942735 5942815 -183336739 - MLT1F1 LTR MaLR -442 125 48 7094 158 92 68 chr6 5942815 5943834 -183335720 - L1MC3 LINE L1 -542 7243 6087 1475 162 38 22 chr6 5943958 5944272 -183335282 - MER33 DNA MER1_type 0 324 6 330 26 0 0 chr6 5945098 5945137 -183334417 + (TG)n Simple_repeat Simple_repeat 2 40 0 285 268 33 72 chr6 5945537 5945690 -183333864 + MIR SINE MIR 34 180 -82 2130 173 36 51 chr6 5946595 5947069 -183332485 + MLT1C LTR MaLR 1 467 0 341 100 0 17 chr6 5947675 5947735 -183331819 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 947 87 16 33 chr6 5947737 5947920 -183331634 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 594 75 0 0 chr6 5947925 5948005 -183331549 + (TTCC)n Simple_repeat Simple_repeat 2 81 0 1202 182 82 82 chr6 5948007 5948287 -183331267 - AluJo SINE Alu -32 280 1 1919 164 0 0 chr6 5948313 5948606 -183330948 - AluJb SINE Alu -19 293 1 182 194 21 161 chr6 5948913 5949006 -183330548 + MIR3 SINE MIR 122 201 -7 223 340 28 38 chr6 5949146 5949252 -183330302 - L2 LINE L2 -57 3215 3111 2039 171 89 39 chr6 5949342 5949782 -183329772 - MLT1C LTR MaLR 0 467 6 627 224 26 13 chr6 5950738 5950894 -183328660 + Charlie8 DNA MER1_type 102 259 -2158 198 103 0 0 chr6 5952354 5952383 -183327171 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 2807 77 66 16 chr6 5952591 5953018 -183326536 - LTR7 LTR ERV1 -2 448 1 2676 66 45 13 chr6 5953018 5953398 -183326156 - HERVH LTR ERV1 0 7713 7322 1426 115 23 9 chr6 5953396 5953613 -183325941 - HERVH LTR ERV1 -1894 5819 5600 * 4229 153 12 1 chr6 5953614 5954269 -183325285 - HERVH LTR ERV1 -2564 5149 4488 3479 105 10 2 chr6 5954267 5954771 -183324783 - HERVH LTR ERV1 -3714 3999 3492 * 888 143 27 0 chr6 5954761 5954908 -183324646 - HERVH LTR ERV1 -4423 3290 3140 * 17037 101 36 25 chr6 5954878 5957966 -183321588 - HERVH LTR ERV1 -4709 3004 1 2724 89 60 17 chr6 5957968 5958382 -183321172 - LTR7 LTR ERV1 -2 448 17 583 256 0 0 chr6 5959484 5959601 -183319953 - MER94 DNA DNA -2 132 16 773 180 6 0 chr6 5960711 5960878 -183318676 + (CAT)n Simple_repeat Simple_repeat 1 168 0 3441 67 2 7 chr6 5960880 5961330 -183318224 - LTR7 LTR ERV1 -2 448 1 213 94 0 0 chr6 5961331 5961363 -183318191 + (CAT)n Simple_repeat Simple_repeat 3 34 0 510 316 59 30 chr6 5961481 5961785 -183317769 + L3 LINE CR1 1251 1563 -14 1228 146 68 5 chr6 5961863 5962069 -183317485 + MER20 DNA MER1_type 1 219 0 12274 34 0 0 chr6 5962286 5964488 -183315066 - L1PA4 LINE L1 0 6155 3951 574 246 8 0 chr6 5964738 5964868 -183314686 - MER94 DNA DNA 0 134 4 374 279 147 35 chr6 5966066 5966305 -183313249 + MIR SINE MIR 2 255 -7 223 359 92 0 chr6 5966348 5966490 -183313064 + L2 LINE L2 3117 3271 -1 655 176 27 148 chr6 5966693 5966949 -183312605 + LTR16A1 LTR ERVL 1 225 -232 804 128 0 0 chr6 6017053 6017178 -183262376 + L1PA13 LINE L1 6039 6163 0 4580 243 51 35 chr6 6017205 6017901 -183261653 + L1M4 LINE L1 3181 3864 -2282 2140 111 3 0 chr6 6017901 6018199 -183261355 + AluSp SINE Alu 1 299 -14 4580 243 51 35 chr6 6018199 6018336 -183261218 + L1M4 LINE L1 3864 3997 -2149 2353 84 3 0 chr6 6018336 6018645 -183260909 + AluY SINE Alu 1 310 -1 4580 243 51 35 chr6 6018645 6019663 -183259891 + L1M4 LINE L1 3997 5063 -1083 249 275 0 0 chr6 6019698 6019789 -183259765 + L1MC4 LINE L1 6614 6704 -1338 765 166 0 0 chr6 6019911 6020056 -183259498 - AluY SINE Alu 0 311 167 261 267 23 23 chr6 6020647 6020733 -183258821 + MIR SINE MIR 55 140 -68 1481 262 173 6 chr6 6020804 6021527 -183258027 + L2 LINE L2 2461 3312 -1 329 229 64 9 chr6 6021524 6021633 -183257921 - MIR SINE MIR -85 177 63 * 2241 105 0 3 chr6 6021828 6022123 -183257431 - AluSx SINE Alu -18 294 1 2236 95 0 0 chr6 6022778 6023063 -183256491 - AluSx SINE Alu -6 306 22 253 250 0 0 chr6 6023386 6023470 -183256084 - L1MC4 LINE L1 -1339 6703 6620 1243 68 0 0 chr6 6023593 6023755 -183255799 - AluY SINE Alu 0 311 150 334 130 0 29 chr6 6023764 6023833 -183255721 + (TA)n Simple_repeat Simple_repeat 2 68 0 1449 185 46 60 chr6 6023833 6024287 -183255267 + L1ME2 LINE L1 5603 6050 -114 1197 282 153 7 chr6 6025072 6025677 -183253877 - L2 LINE L2 -6 3307 2612 4221 179 38 5 chr6 6027229 6028026 -183251528 - MER54A LTR ERVL -4 897 75 460 191 17 9 chr6 6028638 6028753 -183250801 - Charlie5 DNA MER1_type 0 2624 2509 * 1357 212 104 51 chr6 6028752 6029205 -183250349 - MLT1D LTR MaLR -28 477 1 774 159 6 38 chr6 6029206 6029388 -183250166 - MER33 DNA MER1_type -262 62 1 672 195 94 25 chr6 6029390 6029549 -183250005 + MER5B DNA MER1_type 5 174 -4 246 136 0 0 chr6 6029607 6029651 -183249903 + (TC)n Simple_repeat Simple_repeat 1 44 0 225 0 0 0 chr6 6029725 6029750 -183249804 + (TG)n Simple_repeat Simple_repeat 2 26 0 202 346 0 0 chr6 6029850 6029902 -183249652 - L2 LINE L2 -6 3266 3215 200 189 0 0 chr6 6030004 6030041 -183249513 + (CA)n Simple_repeat Simple_repeat 2 38 0 2035 179 16 40 chr6 6030941 6031365 -183248189 - MLT2D LTR ERVL 0 414 1 209 182 45 154 chr6 6031367 6031477 -183248077 + L2 LINE L2 3155 3252 -20 218 261 72 43 chr6 6032459 6032528 -183247026 + L2 LINE L2 3202 3272 0 614 233 126 6 chr6 6032598 6032757 -183246797 + MER5A DNA MER1_type 12 189 0 2750 125 28 0 chr6 6032889 6033320 -183246234 - L1PB3 LINE L1 -1 6153 5711 329 269 0 0 chr6 6034500 6034567 -183244987 + MER5A DNA MER1_type 9 75 -114 599 107 0 0 chr6 6034570 6034654 -183244900 + AluS SINE Alu 1 84 -229 182 208 21 0 chr6 6036260 6036308 -183243246 + GA-rich Low_complexity Low_complexity 4 52 0 466 266 31 44 chr6 6036909 6037091 -183242463 + MER5A DNA MER1_type 3 178 0 236 275 0 0 chr6 6039740 6039809 -183239745 - MER113 DNA MER1_type? -118 403 335 234 371 19 0 chr6 6039889 6039994 -183239560 + L2 LINE L2 2903 3009 -263 466 256 80 23 chr6 6040366 6040628 -183238926 - L1MC5 LINE L1 -48 7913 7637 22 56 0 0 chr6 6040628 6040664 -183238890 + AT_rich Low_complexity Low_complexity 1 36 0 5683 96 11 13 chr6 6040742 6041292 -183238262 - L1PB1 LINE L1 0 6151 5602 2271 83 3 23 chr6 6041292 6041593 -183237961 - AluSc SINE Alu -14 295 1 5683 96 11 13 chr6 6041593 6041937 -183237617 - L1PB1 LINE L1 -549 5602 5259 973 267 80 60 chr6 6042102 6042156 -183237398 - L1MEd LINE L1 -4868 1251 1200 2421 87 0 0 chr6 6042156 6042456 -183237098 - AluY SINE Alu -11 300 1 973 267 80 60 chr6 6042456 6043408 -183236146 - L1MEd LINE L1 -4919 1200 323 225 226 97 11 chr6 6043554 6043647 -183235907 - L1MEd LINE L1 -5941 178 78 435 288 161 15 chr6 6043691 6043965 -183235589 + L1MC4a LINE L1 5575 5888 -1920 24 0 0 0 chr6 6043997 6044021 -183235533 + AT_rich Low_complexity Low_complexity 1 24 0 2844 126 11 7 chr6 6044385 6044830 -183234724 - L1PA11 LINE L1 -1 6173 5727 603 59 24 0 chr6 6045621 6045706 -183233848 - L1PA6 LINE L1 -2 6152 6066 17375 93 7 4 chr6 6045706 6048181 -183231373 - HERVK9 LTR ERVK -1810 4106 1625 4235 103 12 21 chr6 6048182 6048849 -183230705 - HERVK9 LTR ERVK -5255 661 1 2975 118 51 8 chr6 6048849 6049339 -183230215 - MER9 LTR ERVK 0 511 1 2839 3 0 16 chr6 6049375 6049691 -183229863 - AluYa5 SINE Alu 0 311 1 21315 126 13 18 chr6 6049691 6050220 -183229334 - L1P LINE L1 -2530 3616 3086 2290 113 0 6 chr6 6050220 6050531 -183229023 - AluY SINE Alu -2 309 1 21315 126 13 18 chr6 6050531 6053623 -183225931 - L1P LINE L1 -3060 3086 11 1516 169 66 0 chr6 6053842 6054115 -183225439 - AluY SINE Alu -20 291 1 324 242 78 13 chr6 6054552 6054705 -183224849 + L1ME LINE L1 5508 5670 -451 1442 247 53 40 chr6 6054750 6055280 -183224274 - MER74A LTR ERVL 0 558 22 689 190 27 2 chr6 6055283 6055454 -183224100 - L1MA4 LINE L1 -190 6114 5942 818 159 14 7 chr6 6055550 6055695 -183223859 + MER47A DNA MER2_type 5 150 -216 470 265 67 76 chr6 6055696 6056075 -183223479 + L1MEc LINE L1 2167 2499 -3716 874 297 73 38 chr6 6056105 6057413 -183222141 + L1MEc LINE L1 2714 4068 -2147 8549 145 11 6 chr6 6057429 6060073 -183219481 + L1MA2 LINE L1 3652 6304 0 33 0 0 0 chr6 6060076 6060109 -183219445 + AT_rich Low_complexity Low_complexity 1 33 0 328 343 41 0 chr6 6060271 6060516 -183219038 + L1MEc LINE L1 4864 5118 -1097 227 264 35 11 chr6 6060861 6060948 -183218606 - MLT1K LTR MaLR -15 573 485 675 214 7 89 chr6 6060974 6061194 -183218360 - MIR SINE MIR -35 227 33 234 0 0 0 chr6 6061270 6061296 -183218258 + (CA)n Simple_repeat Simple_repeat 2 27 0 385 335 76 57 chr6 6061443 6062023 -183217531 - L2 LINE L2 -396 2918 2328 644 246 214 23 chr6 6062036 6062423 -183217131 - LTR67 LTR ERVL 0 557 97 1510 164 15 107 chr6 6063412 6063814 -183215740 - MLT1A1 LTR MaLR 0 365 1 1769 215 11 5 chr6 6064614 6064982 -183214572 + MLT1A2 LTR MaLR 1 370 -4 16892 192 17 13 chr6 6065435 6066684 -183212870 - L1PA12 LINE L1 -298 7308 6065 2046 133 3 0 chr6 6066684 6066977 -183212577 + AluSx SINE Alu 1 294 -18 16892 192 17 13 chr6 6066977 6067132 -183212422 - L1PA12 LINE L1 -1541 6065 5912 306 0 0 0 chr6 6067132 6067166 -183212388 + (TTA)n Simple_repeat Simple_repeat 3 36 0 13518 28 0 0 chr6 6067166 6069518 -183210036 - L1PA4 LINE L1 -18 6137 3784 16892 192 17 13 chr6 6069518 6071805 -183207749 - L1PA12 LINE L1 -1694 5912 3585 2119 139 0 0 chr6 6071805 6072106 -183207448 - AluSx SINE Alu -11 301 1 16892 192 17 13 chr6 6072106 6073263 -183206291 - L1PA12 LINE L1 -4021 3585 2434 1126 198 0 25 chr6 6073344 6073581 -183205973 - L1PA12 LINE L1 -7350 231 1 6040 145 31 0 chr6 6073699 6075094 -183204460 - L1MA1 LINE L1 0 7721 6275 * 18956 168 38 36 chr6 6075093 6079877 -183199677 - L1MA1 LINE L1 -2691 4874 93 198 0 0 0 chr6 6079877 6079899 -183199655 + (TG)n Simple_repeat Simple_repeat 2 23 0 18956 168 38 36 chr6 6079899 6079979 -183199575 - L1MA1 LINE L1 -7472 93 15 339 125 0 0 chr6 6080022 6080078 -183199476 - MADE1 DNA Mariner -24 56 1 2151 243 46 35 chr6 6080083 6080768 -183198786 - L1MEc LINE L1 -3148 3067 2404 2224 132 0 0 chr6 6080768 6081078 -183198476 - AluSq SINE Alu -3 310 1 2151 243 46 35 chr6 6081078 6081297 -183198257 - L1MEc LINE L1 -3811 2404 2189 697 244 94 23 chr6 6081345 6081644 -183197910 - L1MEc LINE L1 -4356 2040 1721 21573 127 18 10 chr6 6081677 6086133 -183193421 - L1PA7 LINE L1 0 6154 1665 21 36 0 0 chr6 6086460 6086488 -183193066 + AT_rich Low_complexity Low_complexity 1 28 0 2074 116 7 7 chr6 6086579 6086881 -183192673 - AluSc SINE Alu -7 302 1 710 245 116 45 chr6 6086962 6087367 -183192187 - L1MC4 LINE L1 0 8042 7524 2055 174 133 4 chr6 6087388 6087860 -183191694 - L1MA4A LINE L1 -25 6278 5746 738 294 52 55 chr6 6087865 6088229 -183191325 - L1M2 LINE L1 -5874 975 613 251 360 11 0 chr6 6088332 6088421 -183191133 - L1M2 LINE L1 -6072 777 688 1832 188 35 0 chr6 6088421 6088767 -183190787 + MSTB LTR MaLR 1 358 -68 240 161 16 16 chr6 6088816 6088878 -183190676 + MSTB LTR MaLR 365 426 -2 274 136 0 51 chr6 6088880 6088939 -183190615 + MSTB-int LTR MaLR 1 56 -1595 6236 190 50 64 chr6 6088939 6090624 -183188930 + MER52A LTR ERV1 1 1754 -1 7379 172 70 18 chr6 6090626 6092145 -183187409 + MSTB-int LTR MaLR 54 1651 0 1715 184 7 0 chr6 6092145 6092450 -183187104 + MSTB LTR MaLR 1 307 -119 1503 201 14 3 chr6 6092449 6092737 -183186817 + MSTB LTR MaLR 136 426 0 * 1964 253 13 0 chr6 6092850 6093324 -183186230 - L1M2 LINE L1 -6368 481 2 2421 241 71 53 chr6 6093327 6094267 -183185287 - L1MC4a LINE L1 -348 7460 6504 2708 263 138 30 chr6 6094876 6095966 -183183588 - MER69 DNA AcHobo -1316 1210 4 6490 118 28 10 chr6 6096855 6098078 -183181476 - L1MA3 LINE L1 0 6305 5062 731 194 8 0 chr6 6098167 6098296 -183181258 - FLAM_A SINE Alu -3 130 1 244 297 54 47 chr6 6100164 6100312 -183179242 - L3 LINE CR1 -5 1572 1424 1758 267 75 24 chr6 6101694 6102244 -183177310 + MLT1E LTR MaLR 16 593 0 2141 139 0 0 chr6 6102258 6102559 -183176995 - AluSx SINE Alu -11 301 1 944 190 36 107 chr6 6102585 6102922 -183176632 - L1ME3A LINE L1 -101 6069 5757 643 214 53 0 chr6 6102926 6103057 -183176497 - L1ME3A LINE L1 -507 5663 5526 194 301 0 14 chr6 6104898 6104971 -183174583 + L3 LINE CR1 1142 1213 -364 2024 253 43 15 chr6 6105160 6105216 -183174338 - MLT1H1 LTR MaLR -1 554 501 994 153 84 11 chr6 6105216 6105406 -183174148 + L1MA4A LINE L1 6100 6303 0 2024 253 43 15 chr6 6105406 6105887 -183173667 - MLT1H1 LTR MaLR -54 501 2 218 293 0 32 chr6 6107293 6107416 -183172138 + (TGGA)n Simple_repeat Simple_repeat 3 121 0 544 13 53 0 chr6 6107828 6107903 -183171651 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 268 278 41 0 chr6 6108261 6108358 -183171196 - L1MC4 LINE L1 0 8042 7942 16220 29 3 1 chr6 6108368 6111032 -183168522 - L1PA3 LINE L1 -2 6153 3486 333 220 264 0 chr6 6111040 6111131 -183168423 + MER117 DNA MER1_type 41 155 -42 348 287 20 34 chr6 6114060 6114221 -183165333 - MIR3 SINE MIR -87 175 15 3164 83 32 17 chr6 6114280 6114747 -183164807 + L1PB1 LINE L1 5678 6151 0 2724 156 4 28 chr6 6116290 6116797 -183162757 + L1MA6 LINE L1 5801 6295 -5 1764 208 11 19 chr6 6116821 6117196 -183162358 + MLT1A2 LTR MaLR 1 372 -2 638 298 146 22 chr6 6118225 6118594 -183160960 + L3 LINE CR1 1072 1486 -91 191 286 0 0 chr6 6118810 6118852 -183160702 + L2 LINE L2 3255 3296 -17 591 295 16 21 chr6 6118877 6119067 -183160487 + MIR SINE MIR 3 191 -71 271 303 50 0 chr6 6120023 6120122 -183159432 + MIR SINE MIR 41 144 -118 577 102 11 0 chr6 6120779 6120867 -183158687 + L1MA5 LINE L1 6206 6294 -6 209 386 16 16 chr6 6121346 6121473 -183158081 - MIR3 SINE MIR -44 164 38 1030 216 9 5 chr6 6121827 6122045 -183157509 - MER20 DNA MER1_type 0 219 1 272 253 62 88 chr6 6124133 6124327 -183155227 + MER3 DNA MER1_type 21 209 0 * 1059 183 0 11 chr6 6124327 6124362 -183155192 - MER3 DNA MER1_type -164 45 13 753 220 30 0 chr6 6124363 6124531 -183155023 - MIR SINE MIR -68 194 22 368 274 61 76 chr6 6124576 6124839 -183154715 - MIR SINE MIR -3 259 1 223 218 64 0 chr6 6125721 6125804 -183153750 + MIR SINE MIR 37 130 -78 2520 75 0 0 chr6 6126331 6126636 -183152918 - AluY SINE Alu -4 307 3 306 284 85 43 chr6 6126932 6127073 -183152481 - MER91A DNA MER1_type -30 166 20 2222 88 0 0 chr6 6127432 6127705 -183151849 + AluSx SINE Alu 1 273 -39 456 346 21 5 chr6 6128251 6128439 -183151115 - MIR SINE MIR -67 195 5 299 340 74 28 chr6 6128371 6128586 -183150968 + MIR SINE MIR 17 241 -21 * 4927 105 42 16 chr6 6128875 6129618 -183149936 - L1PA13 LINE L1 -6 6157 5396 660 84 176 8 chr6 6129618 6129737 -183149817 + L1PA13 LINE L1 5254 5392 -776 2137 103 0 3 chr6 6129744 6130046 -183149508 + L1PA14 LINE L1 5858 6158 -3 189 0 0 0 chr6 6130051 6130072 -183149482 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 413 203 17 34 chr6 6130232 6130409 -183149145 + CT-rich Low_complexity Low_complexity 5 178 0 736 256 39 17 chr6 6131623 6131857 -183147697 + MIR SINE MIR 15 253 -9 830 221 17 43 chr6 6132367 6132598 -183146956 + L1ME3 LINE L1 5937 6161 -1 180 0 0 0 chr6 6132870 6132890 -183146664 + (T)n Simple_repeat Simple_repeat 1 20 0 183 184 0 0 chr6 6132906 6132944 -183146610 + (CA)n Simple_repeat Simple_repeat 1 38 0 628 195 53 35 chr6 6134576 6134745 -183144809 + MER5B DNA MER1_type 6 177 -1 367 263 219 0 chr6 6134842 6134979 -183144575 + MER5A DNA MER1_type 16 182 -7 362 233 14 0 chr6 6135055 6135128 -183144426 - MER81 DNA DNA -40 74 1 1190 167 28 19 chr6 6135132 6135348 -183144206 + MER20B DNA MER1_type 2 219 0 2122 124 0 0 chr6 6136151 6136441 -183143113 + AluSx SINE Alu 19 308 -4 182 312 56 32 chr6 6137014 6137139 -183142415 - MIR SINE MIR -91 171 44 359 212 34 51 chr6 6137616 6137734 -183141820 - MER103 DNA DNA -47 119 4 442 267 0 0 chr6 6138315 6138431 -183141123 - MIR SINE MIR -10 252 137 325 277 75 0 chr6 6139436 6139530 -183140024 + L2 LINE L2 3178 3278 -35 243 231 0 0 chr6 6140294 6140346 -183139208 - MIR SINE MIR -10 252 201 289 380 72 0 chr6 6140753 6141172 -183138382 - L2 LINE L2 -1230 2084 1636 180 310 79 49 chr6 6142153 6142356 -183137198 + L2 LINE L2 2897 3105 -167 183 313 54 9 chr6 6143131 6143243 -183136311 + L2 LINE L2 2899 3015 -257 547 259 109 85 chr6 6144498 6144915 -183134639 + MLT1L LTR MaLR 110 611 -4 410 306 14 7 chr6 6145236 6145380 -183134174 + MIR SINE MIR 108 252 -10 206 229 0 21 chr6 6145498 6145546 -183134008 - MER5B DNA MER1_type -19 159 113 314 330 96 20 chr6 6146116 6146313 -183133241 - MIR SINE MIR -4 258 47 213 244 58 47 chr6 6146973 6147059 -183132495 + MER5B DNA MER1_type 2 88 -90 198 195 49 0 chr6 6147112 6147153 -183132401 + MIR SINE MIR 72 114 -148 43281 38 22 7 chr6 6147154 6153280 -183126274 - L1PA3 LINE L1 0 6172 1 462 315 89 52 chr6 6153872 6154551 -183125003 - L2 LINE L2 -92 3180 2446 202 205 0 0 chr6 6154826 6154865 -183124689 + (TG)n Simple_repeat Simple_repeat 1 39 0 503 328 51 0 chr6 6156834 6157011 -183122543 + MIR SINE MIR 5 190 -72 2210 123 0 0 chr6 6159426 6159719 -183119835 + AluSc SINE Alu 1 293 -16 251 368 46 33 chr6 6160582 6160734 -183118820 - L2 LINE L2 -1 3271 3118 331 198 74 0 chr6 6160742 6160823 -183118731 + MIR SINE MIR 164 250 -12 487 246 50 40 chr6 6161132 6161236 -183118318 - MIR SINE MIR -5 257 156 2544 46 0 13 chr6 6161236 6161539 -183118015 + AluY SINE Alu 1 299 -12 487 246 50 40 chr6 6161539 6161647 -183117907 - MIR SINE MIR -106 156 50 1758 159 57 0 chr6 6162313 6162596 -183116958 + AluJb SINE Alu 1 299 -13 216 0 0 0 chr6 6163732 6163756 -183115798 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 671 121 30 0 chr6 6163759 6163858 -183115696 - FLAM_C SINE Alu -27 116 15 920 169 31 73 chr6 6163972 6164233 -183115321 - L1MA7 LINE L1 0 6291 6042 272 301 21 11 chr6 6164401 6164494 -183115060 + L2 LINE L2 3175 3268 -4 1246 222 45 24 chr6 6165241 6165811 -183113743 + MLT1E1 LTR MaLR 9 645 -9 192 40 0 0 chr6 6165976 6166001 -183113553 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 205 153 0 85 chr6 6167804 6167863 -183111691 + A-rich Low_complexity Low_complexity 2 55 0 573 188 92 61 chr6 6168658 6168887 -183110667 - MER20B DNA MER1_type 0 783 548 6199 222 57 39 chr6 6168981 6170669 -183108885 + L1M4 LINE L1 14 1936 -1069 4113 190 31 18 chr6 6170837 6171970 -183107584 + L1MB7 LINE L1 4963 6107 -77 1746 147 25 21 chr6 6171971 6172256 -183107298 + AluJb SINE Alu 1 286 -26 23 0 0 0 chr6 6172351 6172374 -183107180 + AT_rich Low_complexity Low_complexity 1 23 0 403 109 16 0 chr6 6172374 6172438 -183107116 - Alu SINE Alu -15 297 233 1190 239 68 23 chr6 6172855 6173249 -183106305 - L1ME3A LINE L1 -10 6160 5749 549 264 43 40 chr6 6173249 6173268 -183106286 - L2 LINE L2 -311 3002 2985 2334 92 3 10 chr6 6173268 6173574 -183105980 + AluSq SINE Alu 1 304 -9 549 264 43 40 chr6 6173574 6173814 -183105740 - L2 LINE L2 -328 2985 2744 1758 113 55 24 chr6 6173914 6174205 -183105349 - THE1C LTR MaLR -75 300 1 1833 150 32 0 chr6 6174237 6174517 -183105037 - AluJb SINE Alu -23 289 1 2019 128 3 0 chr6 6174710 6174999 -183104555 - AluSc SINE Alu -19 290 1 1099 311 12 50 chr6 6175967 6176449 -183103105 - L2 LINE L2 0 3272 2809 1053 155 22 43 chr6 6176503 6176735 -183102819 - AluJo SINE Alu 0 312 86 314 242 62 0 chr6 6176786 6176914 -183102640 + AluSp SINE Alu 15 150 -153 961 101 0 0 chr6 6177045 6177164 -183102390 - AluSq/x SINE Alu -194 119 1 588 210 8 0 chr6 6177171 6177295 -183102259 - FLAM_C SINE Alu -10 133 9 2262 105 0 7 chr6 6177310 6177615 -183101939 - AluSx SINE Alu -9 303 1 387 127 0 0 chr6 6177625 6177688 -183101866 + (ATG)n Simple_repeat Simple_repeat 3 65 0 206 242 48 48 chr6 6178276 6178338 -183101216 + L2 LINE L2 3025 3086 -186 2170 110 3 3 chr6 6178700 6179000 -183100554 + AluSx SINE Alu 2 301 -11 1638 119 12 0 chr6 6179261 6179505 -183100049 + L1PA16 LINE L1 5792 6038 -128 1326 92 6 6 chr6 6179505 6179679 -183099875 + AluSq SINE Alu 1 174 -139 43787 35 24 1 chr6 6179780 6185650 -183093904 - L1PA3 LINE L1 -150 6005 1 352 272 243 6 chr6 6186097 6186266 -183093288 - MIR SINE MIR -34 228 20 2101 131 0 16 chr6 6186284 6186590 -183092964 + AluSx SINE Alu 1 301 -11 446 117 0 0 chr6 6186631 6186691 -183092863 + AluS SINE Alu 11 70 -239 1714 227 30 59 chr6 6186988 6187565 -183091989 - MER68 LTR ERV1 0 562 3 865 158 33 0 chr6 6188939 6189091 -183090463 - L1MB2 LINE L1 -3 6168 6012 515 284 0 16 chr6 6189103 6189286 -183090268 + (TG)n Simple_repeat Simple_repeat 1 180 0 219 69 0 0 chr6 6189984 6190013 -183089541 + (TG)n Simple_repeat Simple_repeat 2 30 0 447 256 141 0 chr6 6190074 6190230 -183089324 + MIR SINE MIR 75 252 -10 2144 60 26 0 chr6 6190548 6190813 -183088741 - AluY SINE Alu -39 272 1 316 178 0 109 chr6 6191983 6192084 -183087470 - L1MC4 LINE L1 -1339 6703 6614 711 227 99 147 chr6 6192207 6192771 -183086783 + MLT1H1 LTR MaLR 6 555 0 229 315 9 0 chr6 6193347 6193440 -183086114 - MIR SINE MIR -72 136 41 25 0 0 0 chr6 6195372 6195397 -183084157 + AT_rich Low_complexity Low_complexity 1 25 0 299 293 25 51 chr6 6195729 6195886 -183083668 - MER5A DNA MER1_type -36 153 1 2749 166 42 17 chr6 6196230 6196773 -183082781 - MER89 LTR ERV1 0 559 3 1333 277 78 23 chr6 6198071 6198548 -183081006 + MLT1J LTR MaLR 7 509 -2 21 36 0 0 chr6 6199496 6199524 -183080030 + AT_rich Low_complexity Low_complexity 1 28 0 2173 102 0 3 chr6 6200485 6200780 -183078774 + AluSx SINE Alu 1 294 -18 317 261 48 106 chr6 6201762 6201901 -183077653 + MIR3 SINE MIR 22 149 -59 1954 128 3 23 chr6 6201901 6202206 -183077348 - AluSq SINE Alu -14 299 1 317 261 48 106 chr6 6202206 6202254 -183077300 + MIR3 SINE MIR 149 198 -10 336 287 146 30 chr6 6202379 6202768 -183076786 + MLT1L LTR MaLR 163 580 -8 1981 135 3 10 chr6 6202806 6203109 -183076445 - AluSx SINE Alu -11 301 1 286 313 70 35 chr6 6204082 6204280 -183075274 - MIR SINE MIR -11 251 42 2248 127 50 14 chr6 6204787 6205149 -183074405 + THE1C LTR MaLR 1 375 0 1173 226 46 91 chr6 6205563 6206228 -183073326 - L1ME LINE L1 -4925 1653 1031 213 39 0 0 chr6 6206434 6206460 -183073094 + (TAA)n Simple_repeat Simple_repeat 2 27 0 257 342 0 0 chr6 6207416 6207492 -183072062 - MIR3 SINE MIR -21 187 112 407 293 77 87 chr6 6207566 6207864 -183071690 - L1ME LINE L1 -459 5662 5367 2333 101 0 3 chr6 6207864 6208170 -183071384 - AluSq SINE Alu 0 313 9 407 293 77 87 chr6 6208170 6208273 -183071281 - L1ME LINE L1 -754 5367 5265 2230 4 0 4 chr6 6208704 6208977 -183070577 - AluYa5 SINE Alu 0 341 70 1117 139 19 48 chr6 6208982 6209191 -183070363 - MER49 LTR ERV1 -716 207 5 188 172 121 17 chr6 6209365 6209423 -183070131 - MIR SINE MIR -115 147 84 * 492 274 8 0 chr6 6209419 6209543 -183070011 + MIR SINE MIR 25 149 -113 689 240 116 25 chr6 6209562 6209971 -183069583 - LTR33A LTR ERVL -25 498 9 287 219 19 86 chr6 6210380 6210431 -183069123 + L2 LINE L2 3215 3259 -54 2003 128 4 0 chr6 6210431 6210748 -183068806 + AluSx SINE Alu 1 318 0 287 219 19 86 chr6 6210748 6210799 -183068755 + L2 LINE L2 3259 3312 -1 365 257 121 51 chr6 6210822 6211079 -183068475 + L2 LINE L2 2487 2761 -553 380 295 38 0 chr6 6211857 6211962 -183067592 - L2 LINE L2 -5 3308 3200 3816 143 5 0 chr6 6212950 6213503 -183066051 - MER41D LTR ERV1 0 557 2 300 205 63 87 chr6 6215388 6215515 -183064039 + MIR SINE MIR 18 141 -67 691 239 35 78 chr6 6215906 6216087 -183063467 - MER58A DNA MER1_type -2196 224 53 2266 79 4 0 chr6 6216087 6216400 -183063154 + AluY SINE Alu 1 314 0 691 239 35 78 chr6 6216400 6216447 -183063107 - MER58A DNA MER1_type -2367 53 5 256 297 126 18 chr6 6216826 6216937 -183062617 - MIR SINE MIR -79 183 61 2122 126 0 7 chr6 6217109 6217411 -183062143 + AluSq SINE Alu 2 301 -12 245 362 21 11 chr6 6217516 6217610 -183061944 - MIR SINE MIR -78 130 36 554 270 54 32 chr6 6217636 6217821 -183061733 + MIR SINE MIR 10 198 -64 532 238 71 8 chr6 6217843 6217969 -183061585 + L2 LINE L2 3179 3312 -1 1552 171 92 18 chr6 6219587 6219868 -183059686 + AluJo SINE Alu 1 302 0 393 100 17 0 chr6 6220097 6220157 -183059397 - MADE1 DNA Mariner -17 63 3 872 158 0 0 chr6 6220985 6221118 -183058436 - AluJo SINE Alu -178 134 2 416 293 246 6 chr6 6221332 6221653 -183057901 - L2 LINE L2 -877 2437 2040 1335 293 179 28 chr6 6222109 6223034 -183056520 - L2 LINE L2 -641 2673 1609 793 210 30 0 chr6 6223034 6223201 -183056353 - MER5B DNA MER1_type 0 178 7 324 299 104 44 chr6 6223196 6223514 -183056040 - L2 LINE L2 -1704 1610 1274 * 192 125 31 0 chr6 6224488 6224520 -183055034 + MER5B DNA MER1_type 15 47 -131 * 622 177 92 0 chr6 6224494 6224624 -183054930 - MER5A DNA MER1_type -21 168 27 534 157 14 71 chr6 6224626 6224766 -183054788 + AluJo SINE Alu 92 223 -89 2344 110 0 0 chr6 6224830 6225140 -183054414 + AluSg SINE Alu 1 310 0 214 292 0 0 chr6 6227020 6227068 -183052486 - L2 LINE L2 -48 3224 3177 194 286 0 18 chr6 6227719 6227775 -183051779 + L2 LINE L2 3213 3267 -5 246 32 0 0 chr6 6228059 6228090 -183051464 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 27 29 0 0 chr6 6230249 6230283 -183049271 + AT_rich Low_complexity Low_complexity 1 34 0 275 260 0 14 chr6 6230534 6230607 -183048947 - L2 LINE L2 -2 3270 3199 720 206 96 48 chr6 6230626 6230835 -183048719 + MIR SINE MIR 20 238 -24 827 265 83 54 chr6 6231582 6232088 -183047466 - L1MC4a LINE L1 -672 5479 5358 238 278 9 37 chr6 6232172 6232280 -183047274 - L1MC4a LINE L1 -1164 4982 4878 277 198 78 103 chr6 6232378 6232494 -183047060 - MLT1H LTR MaLR 0 549 437 317 248 186 9 chr6 6232714 6232827 -183046727 - MLT1H LTR MaLR -374 175 43 2022 118 56 0 chr6 6232933 6233220 -183046334 - AluSx SINE Alu -9 303 1 299 269 57 57 chr6 6233244 6233437 -183046117 - L1MC4a LINE L1 -1487 4659 4467 * 706 217 63 146 chr6 6233429 6234154 -183045400 - L1MC5 LINE L1 -21 7940 7276 379 173 0 27 chr6 6234284 6234359 -183045195 - L1MC5 LINE L1 -754 7207 7135 235 301 12 48 chr6 6238360 6238443 -183041111 - MIR3 SINE MIR -123 85 6 2066 102 47 4 chr6 6240573 6240848 -183038706 + AluSp SINE Alu 1 287 -26 670 249 34 28 chr6 6240921 6241098 -183038456 - MER20 DNA MER1_type -39 180 3 216 280 0 0 chr6 6241101 6241151 -183038403 + MIR SINE MIR 102 151 -111 313 340 29 0 chr6 6241268 6241371 -183038183 + MIR SINE MIR 39 144 -64 352 293 47 9 chr6 6242366 6242472 -183037082 - MIR SINE MIR -74 134 25 774 161 0 37 chr6 6242749 6242998 -183036556 + (ATGGTG)n Simple_repeat Simple_repeat 1 239 0 421 322 134 0 chr6 6243016 6243165 -183036389 - L2 LINE L2 0 3272 3104 214 333 129 11 chr6 6245478 6245571 -183033983 - MIR SINE MIR -125 137 34 202 318 34 23 chr6 6246247 6246335 -183033219 - L2 LINE L2 -1 3312 3224 3015 230 79 53 chr6 6246608 6247352 -183032202 - L1ME2 LINE L1 0 6164 5441 189 0 0 0 chr6 6247352 6247373 -183032181 + (TA)n Simple_repeat Simple_repeat 1 21 0 3015 230 79 53 chr6 6247373 6248188 -183031366 - L1ME2 LINE L1 -723 5441 4577 413 304 95 86 chr6 6248236 6248595 -183030959 - L2 LINE L2 0 3272 2911 2908 230 29 27 chr6 6249775 6251163 -183028391 - L1ME1 LINE L1 -5 6161 4776 989 241 126 34 chr6 6251209 6251741 -183027813 - HAL1b LINE L1 -221 1127 547 10875 194 75 3 chr6 6251784 6256501 -183023053 - L1PBa LINE L1 -1801 5061 6 308 197 61 0 chr6 6256515 6256581 -183022973 - HAL1b LINE L1 -1169 179 110 24 0 0 0 chr6 6256666 6256690 -183022864 + AT_rich Low_complexity Low_complexity 1 24 0 180 152 0 0 chr6 6256847 6256880 -183022674 + CT-rich Low_complexity Low_complexity 2 34 0 2073 124 10 0 chr6 6257334 6257624 -183021930 - AluSx SINE Alu -7 305 13 478 257 193 0 chr6 6259669 6259809 -183019745 - MER5A DNA MER1_type -2 187 21 1834 177 26 10 chr6 6260286 6260591 -183018963 + AluJo SINE Alu 1 310 -2 21 57 0 0 chr6 6261812 6261847 -183017707 + AT_rich Low_complexity Low_complexity 1 35 0 486 215 189 5 chr6 6264423 6264611 -183014943 - MIR SINE MIR -6 256 39 345 75 0 0 chr6 6265495 6265548 -183014006 + (CA)n Simple_repeat Simple_repeat 2 54 0 462 238 119 7 chr6 6265983 6266126 -183013428 + MIR SINE MIR 8 166 -96 592 294 10 30 chr6 6266464 6266661 -183012893 + MIR SINE MIR 21 213 -49 235 276 17 0 chr6 6266747 6266805 -183012749 + G-rich Low_complexity Low_complexity 4 62 0 220 368 18 35 chr6 6268028 6268142 -183011412 + L2 LINE L2 3141 3252 -20 21 57 0 0 chr6 6270231 6270266 -183009288 + AT_rich Low_complexity Low_complexity 1 35 0 1801 180 26 10 chr6 6271486 6271791 -183007763 - AluJo SINE Alu -2 310 1 455 264 193 0 chr6 6272268 6272408 -183007146 + MER5A DNA MER1_type 21 187 -2 2050 128 10 0 chr6 6274453 6274742 -183004812 + AluSx SINE Alu 13 304 -8 180 152 0 0 chr6 6275196 6275229 -183004325 + GA-rich Low_complexity Low_complexity 2 34 0 24 0 0 0 chr6 6275386 6275410 -183004144 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 61 0 chr6 6275495 6275561 -183003993 + HAL1b LINE L1 110 179 -1169 10878 194 74 3 chr6 6275575 6280294 -182999260 + L1PBa LINE L1 6 5061 -1801 989 241 126 34 chr6 6280337 6280869 -182998685 + HAL1b LINE L1 547 1127 -221 2930 229 29 27 chr6 6280915 6282303 -182997251 + L1ME1 LINE L1 4776 6161 -5 413 304 95 86 chr6 6283483 6283842 -182995712 + L2 LINE L2 2911 3272 0 2769 232 55 50 chr6 6283946 6285467 -182994087 + L1ME2 LINE L1 4633 6164 0 204 318 34 23 chr6 6285739 6285827 -182993727 + L2 LINE L2 3224 3312 -1 207 333 129 11 chr6 6286503 6286596 -182992958 + MIR SINE MIR 34 137 -125 433 322 134 0 chr6 6288920 6289069 -182990485 + L2 LINE L2 3104 3272 0 774 161 0 37 chr6 6289087 6289336 -182990218 + (CACCAT)n Simple_repeat Simple_repeat 1 239 0 349 293 47 9 chr6 6289613 6289719 -182989835 + MIR SINE MIR 25 134 -74 314 340 29 0 chr6 6290714 6290817 -182988737 - MIR SINE MIR -64 144 39 217 280 0 0 chr6 6290934 6290984 -182988570 - MIR SINE MIR -111 151 102 612 244 30 30 chr6 6290996 6291164 -182988390 + MER20 DNA MER1_type 13 180 -39 2070 102 47 4 chr6 6291237 6291512 -182988042 - AluSp SINE Alu -26 287 1 236 301 12 48 chr6 6293642 6293725 -182985829 + MIR3 SINE MIR 6 85 -123 339 173 0 27 chr6 6297726 6297801 -182981753 + L1MC5 LINE L1 7135 7207 -754 467 225 52 147 chr6 6297931 6298630 -182980924 + L1MC5 LINE L1 7276 7907 -54 299 269 34 63 chr6 6298666 6298841 -182980713 + L1MC4a LINE L1 4490 4659 -1487 2032 118 56 0 chr6 6298865 6299152 -182980402 + AluSx SINE Alu 1 303 -9 317 248 186 9 chr6 6299258 6299371 -182980183 + MLT1H LTR MaLR 43 175 -374 277 198 78 103 chr6 6299591 6299707 -182979847 + MLT1H LTR MaLR 437 549 0 827 265 83 54 chr6 6299997 6300503 -182979051 + L1MC4a LINE L1 5358 5479 -672 720 206 96 48 chr6 6301250 6301459 -182978095 - MIR SINE MIR -24 238 20 275 260 0 14 chr6 6301478 6301551 -182978003 + L2 LINE L2 3199 3270 -2 27 29 0 0 chr6 6301802 6301836 -182977718 + AT_rich Low_complexity Low_complexity 1 34 0 246 32 0 0 chr6 6303995 6304026 -182975528 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 194 286 0 18 chr6 6304310 6304366 -182975188 - L2 LINE L2 -5 3267 3213 214 292 0 0 chr6 6305017 6305065 -182974489 + L2 LINE L2 3177 3224 -48 2344 110 0 0 chr6 6306945 6307255 -182972299 - AluSg SINE Alu 0 310 1 534 157 14 71 chr6 6307320 6307460 -182972094 - AluJo SINE Alu -89 223 92 621 165 94 0 chr6 6307462 6307589 -182971965 + MER5A DNA MER1_type 27 165 -24 183 156 31 0 chr6 6307566 6307598 -182971956 - MER5B DNA MER1_type -131 47 15 * 324 299 104 44 chr6 6308572 6308890 -182970664 + L2 LINE L2 1274 1610 -1704 * 793 210 30 0 chr6 6308885 6309052 -182970502 + MER5B DNA MER1_type 7 178 0 1335 293 179 28 chr6 6309052 6309977 -182969577 + L2 LINE L2 1609 2673 -641 416 293 246 6 chr6 6310433 6310754 -182968800 + L2 LINE L2 2040 2437 -877 872 158 0 0 chr6 6310968 6311101 -182968453 + AluJo SINE Alu 2 134 -178 393 100 17 0 chr6 6311929 6311989 -182967565 + MADE1 DNA Mariner 3 63 -17 1493 165 90 18 chr6 6312221 6312500 -182967054 - AluJo SINE Alu -13 299 1 532 238 71 8 chr6 6314118 6314244 -182965310 - L2 LINE L2 -1 3312 3179 554 270 54 32 chr6 6314266 6314451 -182965103 - MIR SINE MIR -64 198 10 245 362 21 11 chr6 6314477 6314571 -182964983 + MIR SINE MIR 36 130 -78 2165 119 0 7 chr6 6314676 6314978 -182964576 - AluSq SINE Alu -12 301 2 256 297 126 18 chr6 6315150 6315261 -182964293 + MIR SINE MIR 61 183 -79 691 239 35 78 chr6 6315640 6315687 -182963867 + MER58A DNA MER1_type 5 53 -2367 2265 79 4 0 chr6 6315687 6316000 -182963554 - AluY SINE Alu 0 314 1 691 239 35 78 chr6 6316000 6316181 -182963373 + MER58A DNA MER1_type 53 224 0 300 205 63 87 chr6 6316572 6316699 -182962855 - MIR SINE MIR -67 141 18 3816 143 5 0 chr6 6318584 6319137 -182960417 + MER41D LTR ERV1 2 557 0 380 295 38 0 chr6 6320125 6320230 -182959324 + L2 LINE L2 3200 3308 -5 379 257 158 46 chr6 6321008 6321292 -182958262 - L2 LINE L2 -553 2761 2446 287 219 19 86 chr6 6321289 6321340 -182958214 - L2 LINE L2 -1 3312 3268 * 2002 128 4 0 chr6 6321340 6321657 -182957897 - AluSx SINE Alu 0 318 1 287 219 19 86 chr6 6321657 6321708 -182957846 - L2 LINE L2 -45 3268 3215 689 240 116 25 chr6 6322117 6322526 -182957028 + LTR33A LTR ERVL 9 498 -25 492 274 8 0 chr6 6322545 6322669 -182956885 - MIR SINE MIR -113 149 25 188 172 121 17 chr6 6322665 6322723 -182956831 + MIR SINE MIR 84 147 -115 * 5399 169 10 24 chr6 6322897 6323111 -182956443 + MER49 LTR ERV1 5 220 -703 2230 4 0 4 chr6 6323111 6323354 -182956200 + AluYa5 SINE Alu 70 311 0 5399 169 10 24 chr6 6323354 6324071 -182955483 + MER49 LTR ERV1 220 923 0 1013 235 169 20 chr6 6324109 6324500 -182955054 - L2 LINE L2 -10 3303 2855 503 224 241 11 chr6 6324741 6324915 -182954639 - L2 LINE L2 -448 2866 2653 440 160 0 0 chr6 6327549 6327624 -182951930 + MLT1E2 LTR MaLR 552 626 0 2412 79 0 3 chr6 6327700 6328005 -182951549 + AluY SINE Alu 1 304 -7 760 259 97 69 chr6 6328119 6328439 -182951115 + L1MC4 LINE L1 6749 7077 -965 381 252 36 9 chr6 6328454 6328565 -182950989 + L1MC4a LINE L1 7161 7274 -534 1627 231 53 17 chr6 6328582 6328997 -182950557 + LTR16A LTR ERVL 16 445 -5 1978 230 68 23 chr6 6329000 6329527 -182950027 + L1MC4 LINE L1 7351 7901 -141 1654 108 0 22 chr6 6331018 6331249 -182948305 + AluSg/x SINE Alu 69 294 -18 3906 153 59 23 chr6 6331621 6332104 -182947450 + MER50 LTR ERV1 1 518 -216 1909 146 42 0 chr6 6332104 6332391 -182947163 + AluSx SINE Alu 1 299 -13 3906 153 59 23 chr6 6332391 6332604 -182946950 + MER50 LTR ERV1 518 722 -12 4821 161 31 43 chr6 6334029 6334971 -182944583 - L1MA7 LINE L1 -39 6252 5323 258 32 0 0 chr6 6335420 6335451 -182944103 + (CA)n Simple_repeat Simple_repeat 2 32 0 458 301 45 0 chr6 6336458 6336614 -182942940 + MER103 DNA DNA 4 166 0 516 341 131 34 chr6 6337258 6337938 -182941616 + L2 LINE L2 1606 2351 -963 388 283 62 14 chr6 6338015 6338160 -182941394 + MIR SINE MIR 41 192 -70 244 332 48 40 chr6 6338268 6338518 -182941036 + L2 LINE L2 2397 2648 -666 717 139 0 0 chr6 6339699 6339821 -182939733 + (GGGA)n Simple_repeat Simple_repeat 3 124 0 383 58 0 0 chr6 6340053 6340105 -182939449 + L1PA15 LINE L1 6101 6152 -13 2754 72 69 8 chr6 6340124 6340501 -182939053 + MLT2A1 LTR ERVL 1 400 -44 281 197 14 0 chr6 6340501 6340572 -182938982 + (CA)n Simple_repeat Simple_repeat 2 73 0 328 148 0 0 chr6 6340572 6340626 -182938928 + MLT2A1 LTR ERVL 400 453 0 43423 36 22 1 chr6 6340732 6346757 -182932797 - L1PA3 LINE L1 0 6155 1 778 266 50 8 chr6 6347816 6348057 -182931497 + LTR16A LTR ERVL 200 450 0 2916 158 62 38 chr6 6348286 6348836 -182930718 - MER7C DNA MER2_type -39 563 1 312 306 60 75 chr6 6348898 6349150 -182930404 - L1M4 LINE L1 -1099 5047 4800 572 291 87 48 chr6 6349317 6349384 -182930170 - L1M4 LINE L1 -1528 4618 4555 1568 96 35 78 chr6 6349384 6349666 -182929888 - L1MA7 LINE L1 -10 6281 6012 572 291 87 48 chr6 6349666 6350395 -182929159 - L1M4 LINE L1 -1591 4555 3791 327 220 140 80 chr6 6350463 6350568 -182928986 + MER103 DNA DNA 2 120 -46 2027 143 7 3 chr6 6350568 6350869 -182928685 + AluSx SINE Alu 1 302 -10 327 220 140 80 chr6 6350869 6350913 -182928641 + MER103 DNA DNA 120 160 -6 192 279 66 142 chr6 6352318 6352501 -182927053 + MIR SINE MIR 74 242 -20 370 308 134 0 chr6 6352986 6353158 -182926396 + MIR SINE MIR 47 241 -21 1129 321 44 90 chr6 6353642 6354017 -182925537 - L3 LINE CR1 -7 1570 1179 2011 116 3 34 chr6 6354017 6354311 -182925243 - AluSx SINE Alu -27 285 1 1129 321 44 90 chr6 6354311 6354592 -182924962 - L3 LINE CR1 -398 1179 971 1742 136 0 39 chr6 6354592 6354872 -182924682 - AluSx SINE Alu -3 309 41 1129 321 44 90 chr6 6354872 6355195 -182924359 - L3 LINE CR1 -606 971 635 548 326 66 48 chr6 6355301 6355785 -182923769 - L2 LINE L2 -173 3099 2600 519 276 79 0 chr6 6356156 6356308 -182923246 + MER103 DNA DNA 1 164 -2 490 264 36 0 chr6 6356356 6356466 -182923088 + MIR SINE MIR 64 177 -85 207 100 0 0 chr6 6356492 6356522 -182923032 + (TTA)n Simple_repeat Simple_repeat 1 30 0 804 221 164 5 chr6 6356535 6356748 -182922806 + MIR SINE MIR 8 254 -8 209 139 42 14 chr6 6357572 6357644 -182921910 + (TA)n Simple_repeat Simple_repeat 2 75 0 335 126 82 0 chr6 6357657 6357816 -182921738 + (TA)n Simple_repeat Simple_repeat 1 172 0 243 163 43 21 chr6 6357905 6358046 -182921508 + (TA)n Simple_repeat Simple_repeat 1 144 0 2276 75 0 29 chr6 6358378 6358684 -182920870 + AluSc SINE Alu 1 297 -12 180 0 0 0 chr6 6359269 6359289 -182920265 + (T)n Simple_repeat Simple_repeat 1 20 0 2361 82 7 0 chr6 6359975 6360268 -182919286 - AluSq SINE Alu -18 295 1 273 301 58 122 chr6 6360434 6360810 -182918744 + L2 LINE L2 2920 3271 -1 585 0 0 0 chr6 6362067 6362132 -182917422 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 0 0 0 chr6 6362269 6362290 -182917264 + AT_rich Low_complexity Low_complexity 1 21 0 358 307 90 2 chr6 6362712 6362940 -182916614 - MIR SINE MIR -6 256 3 422 309 99 0 chr6 6364192 6364357 -182915197 - MIR3 SINE MIR -9 199 13 420 303 55 43 chr6 6365149 6365403 -182914151 - L2 LINE L2 -5 3308 3052 281 294 174 18 chr6 6365592 6365810 -182913744 + MARNA DNA Mariner 271 522 -64 202 275 0 29 chr6 6366818 6366887 -182912667 + C-rich Low_complexity Low_complexity 4 70 0 180 355 109 32 chr6 6367354 6367368 -182912186 + L2 LINE L2 1294 1305 -2009 1880 135 83 0 chr6 6367368 6367656 -182911898 - AluSx SINE Alu 0 312 1 180 355 109 32 chr6 6367656 6367861 -182911693 + L2 LINE L2 1305 1530 -1784 325 251 140 25 chr6 6368035 6368270 -182911284 + L2 LINE L2 1790 2051 -1263 619 351 11 24 chr6 6368284 6368666 -182910888 + L2 LINE L2 2175 2551 -763 281 316 95 30 chr6 6368673 6368841 -182910713 + L2 LINE L2 2654 2832 -482 698 199 33 7 chr6 6369931 6370082 -182909472 - LTR33A LTR ERVL 0 523 369 358 294 66 15 chr6 6370181 6370317 -182909237 - LTR33A LTR ERVL -318 205 63 2679 184 28 54 chr6 6370344 6370919 -182908635 - MER68 LTR ERV1 0 562 3 905 154 51 0 chr6 6372294 6372450 -182907104 - L1MB2 LINE L1 -3 6168 6005 499 290 0 16 chr6 6372458 6372641 -182906913 + (TG)n Simple_repeat Simple_repeat 1 180 0 255 61 0 0 chr6 6373339 6373372 -182906182 + (TG)n Simple_repeat Simple_repeat 2 34 0 492 256 141 0 chr6 6373433 6373589 -182905965 + MIR SINE MIR 75 252 -10 2206 53 23 0 chr6 6373906 6374172 -182905382 - AluY SINE Alu -39 272 1 329 178 0 109 chr6 6375342 6375443 -182904111 - L1MC4 LINE L1 -1339 6703 6614 707 227 99 147 chr6 6375566 6376130 -182903424 + MLT1H1 LTR MaLR 6 555 0 265 365 31 2 chr6 6376699 6376825 -182902729 - MIR SINE MIR -62 146 15 207 269 46 65 chr6 6377075 6377183 -182902371 - L2 LINE L2 -10 3303 3198 28 0 0 0 chr6 6378731 6378759 -182900795 + AT_rich Low_complexity Low_complexity 1 28 0 345 293 25 51 chr6 6379091 6379248 -182900306 - MER5A DNA MER1_type -36 153 1 2932 162 44 18 chr6 6379592 6380135 -182899419 - MER89 LTR ERV1 0 559 3 1333 277 78 23 chr6 6381432 6381909 -182897645 + MLT1J LTR MaLR 7 509 -2 21 36 0 0 chr6 6382857 6382885 -182896669 + AT_rich Low_complexity Low_complexity 1 28 0 2199 99 0 3 chr6 6383844 6384138 -182895416 + AluSx SINE Alu 1 293 -19 302 266 48 106 chr6 6385120 6385259 -182894295 + MIR3 SINE MIR 22 149 -59 1931 130 3 26 chr6 6385259 6385566 -182893988 - AluSq SINE Alu -13 300 1 302 266 48 106 chr6 6385566 6385614 -182893940 + MIR3 SINE MIR 149 198 -10 336 287 146 30 chr6 6385739 6386128 -182893426 + MLT1L LTR MaLR 163 580 -8 2063 128 0 10 chr6 6386166 6386470 -182893084 - AluSx SINE Alu -11 301 1 283 301 46 43 chr6 6387474 6387637 -182891917 - MIR SINE MIR -50 158 42 2248 127 50 14 chr6 6388144 6388506 -182891048 + THE1C LTR MaLR 1 375 0 1173 226 46 91 chr6 6388920 6389585 -182889969 - L1ME LINE L1 -4925 1653 1031 213 39 0 0 chr6 6389791 6389817 -182889737 + (TAA)n Simple_repeat Simple_repeat 2 27 0 257 342 0 0 chr6 6390773 6390849 -182888705 - MIR3 SINE MIR -21 187 112 407 293 77 87 chr6 6390923 6391221 -182888333 - L1ME LINE L1 -459 5662 5367 2333 101 0 3 chr6 6391221 6391527 -182888027 - AluSq SINE Alu 0 313 9 407 293 77 87 chr6 6391527 6391630 -182887924 - L1ME LINE L1 -754 5367 5265 2434 103 0 0 chr6 6392061 6392402 -182887152 - AluSx SINE Alu 0 342 2 387 340 48 50 chr6 6393536 6393956 -182885598 - L1ME LINE L1 -1077 5069 4651 2005 200 100 21 chr6 6395261 6395740 -182883814 + L1MC4 LINE L1 7306 7822 -220 295 333 28 14 chr6 6395746 6395887 -182883667 - MLT1J LTR MaLR -360 151 9 2299 94 0 7 chr6 6397070 6397378 -182882176 + AluSg SINE Alu 1 306 -4 1235 171 34 41 chr6 6397992 6398261 -182881293 - AluJo SINE Alu -45 267 1 2008 141 0 7 chr6 6398521 6398825 -182880729 + AluSx SINE Alu 1 302 -10 274 113 75 30 chr6 6398852 6398985 -182880569 + (CA)n Simple_repeat Simple_repeat 1 139 0 423 0 0 0 chr6 6399208 6399255 -182880299 + (CA)n Simple_repeat Simple_repeat 1 47 0 231 36 0 0 chr6 6399814 6399842 -182879712 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 234 240 60 0 chr6 6399924 6400024 -182879530 + (TA)n Simple_repeat Simple_repeat 2 107 0 493 299 38 53 chr6 6400036 6400301 -182879253 - MIR SINE MIR -5 257 1 297 51 0 0 chr6 6400728 6400767 -182878787 + (TG)n Simple_repeat Simple_repeat 2 40 0 225 170 94 0 chr6 6401365 6401418 -182878136 + MER53 DNA DNA 1 58 -131 503 189 134 0 chr6 6401456 6401583 -182877971 + MER53 DNA DNA 46 189 0 304 331 45 22 chr6 6402456 6402634 -182876920 + MIR SINE MIR 31 212 -50 2897 137 16 6 chr6 6404564 6405067 -182874487 - L1MC3 LINE L1 0 7785 7278 228 259 152 45 chr6 6405542 6405654 -182873900 - MIR SINE MIR -14 248 125 621 303 137 16 chr6 6406163 6406668 -182872886 + L1MC4a LINE L1 5264 5829 -1979 265 325 73 24 chr6 6409061 6409184 -182870370 - L2 LINE L2 0 3272 3144 1616 78 8 21 chr6 6409407 6409649 -182869905 + MER75B DNA T2_type 1 239 -4 377 177 13 0 chr6 6409876 6409955 -182869599 + (TA)n Simple_repeat Simple_repeat 2 81 0 2121 301 93 31 chr6 6409966 6411150 -182868404 - L2 LINE L2 -167 3146 1896 277 250 0 24 chr6 6411151 6411207 -182868347 + MER94 DNA DNA 4 57 -77 1506 208 33 43 chr6 6411207 6411687 -182867867 - MLT1F LTR MaLR 0 542 5 277 297 0 0 chr6 6411696 6411770 -182867784 + MER94 DNA DNA 61 134 0 262 182 0 0 chr6 6412013 6412057 -182867497 + MLT1K LTR MaLR 434 477 -111 1064 159 67 24 chr6 6413964 6414172 -182865382 - MER20 DNA MER1_type 0 219 3 437 264 50 0 chr6 6414240 6414361 -182865193 - MIR3 SINE MIR -44 164 38 240 59 0 0 chr6 6414487 6414521 -182865033 - MADE1 DNA Mariner -46 34 1 343 43 0 0 chr6 6414598 6414644 -182864910 - MADE1 DNA Mariner -34 46 1 813 73 0 0 chr6 6415148 6415257 -182864297 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 240 111 0 0 chr6 6415261 6415297 -182864257 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr6 6415720 6415751 -182863803 + AT_rich Low_complexity Low_complexity 1 31 0 273 355 41 86 chr6 6416109 6416377 -182863177 - L2 LINE L2 -92 3180 2925 208 321 0 0 chr6 6416665 6416718 -182862836 - MER5A DNA MER1_type 0 189 137 2495 175 50 2 chr6 6416718 6417214 -182862340 + L1MB3 LINE L1 5662 6181 -2 13902 197 15 4 chr6 6417291 6421739 -182857815 + L1P5 LINE L1 1818 6373 -494 377 290 95 6 chr6 6471760 6471929 -182807625 - L2 LINE L2 -874 2440 2257 1016 142 0 44 chr6 6471929 6472112 -182807442 + FRAM SINE Alu 1 172 -4 353 264 74 50 chr6 6472396 6472517 -182807037 + L2 LINE L2 3190 3313 0 308 174 14 0 chr6 6472580 6472649 -182806905 - L1MC4 LINE L1 -2 8040 7971 2376 77 0 3 chr6 6472672 6472971 -182806583 - AluY SINE Alu -13 298 1 2032 116 0 10 chr6 6472985 6473277 -182806277 - AluSx SINE Alu -23 289 1 1254 220 148 6 chr6 6473290 6473348 -182806206 - L1MC4 LINE L1 -65 7977 7929 275 49 24 0 chr6 6473348 6473389 -182806165 + (CA)n Simple_repeat Simple_repeat 2 43 0 1254 220 148 6 chr6 6473389 6473675 -182805879 - L1MC4 LINE L1 -113 7929 7584 324 0 0 0 chr6 6473687 6473723 -182805831 + (T)n Simple_repeat Simple_repeat 1 36 0 235 296 148 11 chr6 6474519 6474708 -182804846 - L2 LINE L2 -1094 2220 2006 517 271 23 8 chr6 6476052 6476185 -182803369 - MER97c DNA MER1_type? -952 138 4 307 284 0 0 chr6 6476810 6476884 -182802670 + L2 LINE L2 3239 3312 -1 235 315 33 33 chr6 6477101 6477193 -182802361 + MIR3 SINE MIR 86 177 -31 21 0 0 0 chr6 6477498 6477519 -182802035 + AT_rich Low_complexity Low_complexity 1 21 0 2682 152 163 10 chr6 6477551 6477991 -182801563 + MLT2B3 LTR ERVL 2 522 -32 572 40 13 0 chr6 6477991 6478066 -182801488 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2682 152 163 10 chr6 6478066 6478105 -182801449 + MLT2B3 LTR ERVL 522 554 0 1614 104 22 0 chr6 6478268 6478490 -182801064 - L1PA8 LINE L1 -6 6166 5940 369 364 65 5 chr6 6478676 6478893 -182800661 - MIR SINE MIR -21 241 12 15807 135 24 8 chr6 6479457 6481837 -182797717 + Tigger1 DNA MER2_type 1 2418 0 3934 113 16 0 chr6 6483455 6484006 -182795548 + L1PB1 LINE L1 5584 6143 -8 227 257 14 40 chr6 6486060 6486134 -182793420 + CT-rich Low_complexity Low_complexity 4 75 0 2800 104 0 3 chr6 6486231 6486616 -182792938 + MER41B LTR ERV1 166 549 -86 2164 115 52 30 chr6 6487106 6487472 -182792082 + THE1C LTR MaLR 2 375 0 752 71 0 0 chr6 6488973 6489071 -182790483 + L1MA8 LINE L1 5998 6095 -196 261 286 98 9 chr6 6489461 6489573 -182789981 - MIR SINE MIR -22 240 119 325 321 37 0 chr6 6489719 6489828 -182789726 + L2 LINE L2 3200 3312 -1 1679 155 7 28 chr6 6490241 6490532 -182789022 - AluJb SINE Alu -27 285 1 2412 61 0 0 chr6 6491638 6491932 -182787622 + AluY SINE Alu 1 294 -17 229 343 82 29 chr6 6492539 6492746 -182786808 - L3b LINE CR1 -203 1380 1163 1885 205 130 53 chr6 6493451 6493958 -182785596 + MLT1H LTR MaLR 4 549 0 229 233 50 33 chr6 6494411 6494471 -182785083 + L2 LINE L2 3206 3266 -6 2118 135 3 0 chr6 6495569 6495872 -182783682 + AluSg SINE Alu 3 306 -4 367 252 58 0 chr6 6496304 6496407 -182783147 - L2 LINE L2 -1413 1901 1793 232 248 9 115 chr6 6497575 6497688 -182781866 + MIR SINE MIR 46 146 -62 264 122 0 0 chr6 6497957 6497998 -182781556 + (TTC)n Simple_repeat Simple_repeat 2 42 0 19820 29 2 2 chr6 6498567 6500911 -182778643 - L1P LINE L1 -931 5215 2872 380 132 26 13 chr6 6501013 6501089 -182778465 + MLT1D LTR MaLR 429 505 0 1868 191 132 4 chr6 6501089 6501550 -182778004 + L1MB7 LINE L1 5646 6165 -19 6236 64 0 4 chr6 6501672 6502419 -182777135 - L1PA8 LINE L1 -5 6167 5424 1661 84 0 28 chr6 6502416 6502670 -182776884 + L1PA8 LINE L1 5154 5400 -746 183 80 0 0 chr6 6505183 6505208 -182774346 + (CTCTG)n Simple_repeat Simple_repeat 2 26 0 3015 194 24 26 chr6 6505247 6505929 -182773625 + Tigger6a DNA MER2_type 1 680 -403 1974 149 0 0 chr6 6506702 6506990 -182772564 - AluSx SINE Alu -24 288 1 1430 288 51 13 chr6 6507232 6507759 -182771795 - MLT1H LTR MaLR 0 549 3 972 299 25 0 chr6 6507762 6508083 -182771471 - LTR16C LTR ERVL -9 482 154 674 216 46 32 chr6 6508192 6508410 -182771144 - L2 LINE L2 -1366 1948 1728 16237 26 1 0 chr6 6508971 6511661 -182767893 - L1PA3 LINE L1 -3 6152 3462 1159 246 129 14 chr6 6511735 6512170 -182767384 + L1MC4 LINE L1 7375 7859 -183 2505 53 0 0 chr6 6512273 6512589 -182766965 - L1P2 LINE L1 -358 5796 5480 15057 27 0 0 chr6 6512589 6515136 -182764418 - L1PA3 LINE L1 -3 6152 3606 1914 50 0 8 chr6 6515310 6515571 -182763983 - L1PA3 LINE L1 -2524 3622 3364 1099 263 134 10 chr6 6516477 6516888 -182762666 - LTR16B LTR ERVL 0 464 3 303 49 0 0 chr6 6517979 6518020 -182761534 + (TC)n Simple_repeat Simple_repeat 2 42 0 462 327 13 13 chr6 6518318 6518477 -182761077 - MIR SINE MIR -46 216 58 266 303 98 25 chr6 6518501 6518623 -182760931 - MIR SINE MIR -9 253 123 315 299 21 0 chr6 6520383 6520480 -182759074 + MER81 DNA DNA 1 99 -15 354 158 0 49 chr6 6522333 6522415 -182757139 - L1MC2 LINE L1 -13 6331 6254 669 231 0 0 chr6 6522432 6522597 -182756957 - FRAM SINE Alu 0 182 18 4928 168 64 35 chr6 6522608 6523721 -182755833 - L1MC3 LINE L1 -84 7701 6557 21 36 0 0 chr6 6524035 6524063 -182755491 + AT_rich Low_complexity Low_complexity 1 28 0 684 101 20 0 chr6 6524074 6524173 -182755381 - L1MC1 LINE L1 -5 6328 6228 15952 157 15 11 chr6 6524173 6526880 -182752674 - ERVL LTR ERVL -2300 3464 748 312 305 22 59 chr6 6526891 6527153 -182752401 + L1ME4a LINE L1 5385 5650 -516 8371 251 34 30 chr6 6527616 6528581 -182750973 + L1MB4 LINE L1 217 1177 -5205 2137 143 25 25 chr6 6528581 6528945 -182750609 - THE1B LTR MaLR 0 364 1 8371 251 34 30 chr6 6528945 6530814 -182748740 + L1MB4 LINE L1 1177 3037 -3345 23060 38 3 0 chr6 6530814 6534438 -182745116 + L1PA5 LINE L1 2513 6149 -5 8371 251 34 30 chr6 6534438 6535633 -182743921 + L1MB4 LINE L1 3037 4447 -1935 216 0 0 0 chr6 6535633 6535657 -182743897 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 8371 251 34 30 chr6 6535657 6536618 -182742936 + L1MB4 LINE L1 4447 5403 -979 2936 228 28 14 chr6 6536621 6537437 -182742117 + L1MB4 LINE L1 5588 6415 -1 590 339 85 14 chr6 6537931 6538214 -182741340 + MLT1H1 LTR MaLR 1 303 -252 744 294 162 7 chr6 6538439 6538884 -182740670 - L1MC4a LINE L1 -1919 5889 5376 21 0 0 0 chr6 6539098 6539119 -182740435 + AT_rich Low_complexity Low_complexity 1 21 0 4420 160 9 12 chr6 6539209 6540063 -182739491 - L1PB4 LINE L1 -1 6155 5304 1636 239 16 74 chr6 6540124 6540494 -182739060 - L1ME2 LINE L1 -22 6142 5829 1952 191 130 66 chr6 6540494 6541069 -182738485 - LTR9 LTR ERV1 0 612 1 1636 239 16 74 chr6 6541069 6541384 -182738170 - L1ME2 LINE L1 -335 5829 5497 490 242 160 50 chr6 6541488 6541769 -182737785 + L1ME4a LINE L1 5710 6021 -100 410 255 21 0 chr6 6541996 6542090 -182737464 + MIR3 SINE MIR 63 158 -50 1666 80 43 16 chr6 6542635 6543142 -182736412 - MER4A LTR ERV1 0 664 1 1220 222 102 21 chr6 6543213 6543645 -182735909 - MLT1C LTR MaLR 0 467 1 799 265 86 0 chr6 6543719 6543953 -182735601 - MIR SINE MIR 0 262 9 338 293 45 45 chr6 6544018 6544349 -182735205 + L1ME4a LINE L1 5552 5882 -239 4950 114 23 13 chr6 6545411 6546182 -182733372 + MER4E LTR ERV1 1 779 0 5000 34 0 0 chr6 6546733 6547324 -182732230 - LTR10C LTR ERV1 0 591 1 320 58 43 14 chr6 6549877 6549946 -182729608 + (TA)n Simple_repeat Simple_repeat 1 71 0 22 0 0 0 chr6 6550997 6551019 -182728535 + AT_rich Low_complexity Low_complexity 1 22 0 3189 248 77 34 chr6 6551156 6552267 -182727287 + L1M4 LINE L1 39 1196 -5346 214 200 0 0 chr6 6552268 6552308 -182727246 + (TA)n Simple_repeat Simple_repeat 2 41 0 241 136 0 0 chr6 6552308 6552352 -182727202 + L1M4 LINE L1 1194 1237 -5305 4284 234 21 22 chr6 6552361 6553636 -182725918 + L1M4 LINE L1 3867 5147 -999 541 225 0 0 chr6 6553636 6553765 -182725789 + MLT2B3 LTR ERVL 1 129 -425 3031 26 0 4 chr6 6553765 6554164 -182725390 - L1P LINE L1 -730 5425 5028 6468 22 4 0 chr6 6554164 6554894 -182724660 + L1PA3 LINE L1 5419 6154 -1 2029 204 25 28 chr6 6554896 6555292 -182724262 + MLT2B3 LTR ERVL 122 516 -38 319 119 0 68 chr6 6555310 6555369 -182724185 + MLT2C2 LTR ERVL 407 461 -3 652 153 23 139 chr6 6555372 6555588 -182723966 + L1M4 LINE L1 5143 5333 -813 1056 179 0 39 chr6 6555593 6555800 -182723754 + AluJo SINE Alu 95 293 -19 755 172 38 19 chr6 6555802 6555959 -182723595 + L1M4 LINE L1 5323 5482 -702 342 318 139 9 chr6 6556764 6556987 -182722567 + MER112 DNA MER1_type 1 252 -8 403 278 56 0 chr6 6557005 6557131 -182722423 + HAL1 LINE L1 11 143 -2364 430 299 41 7 chr6 6557552 6557699 -182721855 + MLT1L LTR MaLR 428 579 -36 864 289 64 13 chr6 6557707 6558084 -182721470 + HAL1 LINE L1 1379 1774 -733 2504 232 40 2 chr6 6558237 6558768 -182720786 - MLT1F1 LTR MaLR -16 551 1 252 316 83 32 chr6 6558816 6558944 -182720610 + HAL1 LINE L1 2046 2166 -341 1661 129 43 0 chr6 6558944 6559200 -182720354 + AluSx SINE Alu 1 267 -45 252 316 83 32 chr6 6559200 6559324 -182720230 + HAL1 LINE L1 2166 2311 -196 * 5352 157 84 20 chr6 6559295 6560812 -182718742 + L1MC1 LINE L1 4720 6333 0 182 318 131 50 chr6 6561944 6562409 -182717145 + L2 LINE L2 1754 2256 -1058 728 295 214 21 chr6 6563504 6563935 -182715619 + L2 LINE L2 2205 2718 -596 569 212 58 0 chr6 6565586 6565723 -182713831 - MIR SINE MIR -14 248 104 312 291 138 26 chr6 6565934 6566123 -182713431 + L2 LINE L2 2210 2419 -895 1532 264 73 31 chr6 6566268 6566786 -182712768 + MLT1F1 LTR MaLR 9 548 -19 359 348 105 0 chr6 6566797 6566978 -182712576 + L2 LINE L2 2649 2848 -466 2014 124 7 0 chr6 6567835 6568125 -182711429 - AluSx SINE Alu -20 292 1 284 246 55 27 chr6 6568281 6568391 -182711163 + L2 LINE L2 2967 3079 -234 217 227 27 13 chr6 6569039 6569114 -182710440 + (TTATA)n Simple_repeat Simple_repeat 5 80 0 227 164 16 49 chr6 6569170 6569231 -182710323 + (TATAA)n Simple_repeat Simple_repeat 1 59 0 454 188 134 27 chr6 6569311 6569423 -182710131 + MER63 DNA MER1_type 1 750 -312 294 267 0 13 chr6 6569409 6569484 -182710070 + MER63 DNA MER1_type 985 1058 -4 * 216 128 0 0 chr6 6569556 6569568 -182709986 + (A)n Simple_repeat Simple_repeat 1 12 -27 1697 159 6 49 chr6 6569568 6569895 -182709659 + AluSq SINE Alu 1 313 0 216 128 0 0 chr6 6569895 6569921 -182709633 + (A)n Simple_repeat Simple_repeat 11 39 0 180 356 27 0 chr6 6570780 6570853 -182708701 - L2 LINE L2 -31 3282 3208 375 242 134 13 chr6 6571207 6571356 -182708198 - MER104 DNA Tc2 -13 167 1 4246 158 154 30 chr6 6572377 6573659 -182705895 - pTR5 LTR ERV1 -8 2430 738 261 218 0 0 chr6 6574398 6574476 -182705078 + (CA)n Simple_repeat Simple_repeat 1 78 0 554 202 6 0 chr6 6574491 6574669 -182704885 + (CA)n Simple_repeat Simple_repeat 2 180 0 182 190 0 17 chr6 6574700 6574758 -182704796 + (CA)n Simple_repeat Simple_repeat 2 58 0 182 174 65 65 chr6 6574829 6574875 -182704679 + L2 LINE L2 3219 3264 -8 249 224 0 30 chr6 6575233 6575300 -182704254 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 245 210 16 0 chr6 6575301 6575363 -182704191 - L1MC4 LINE L1 -1340 6702 6640 342 0 0 0 chr6 6575909 6575947 -182703607 + (CA)n Simple_repeat Simple_repeat 2 39 0 213 65 0 0 chr6 6577919 6577950 -182701604 + (TA)n Simple_repeat Simple_repeat 1 31 0 210 71 0 0 chr6 6579118 6579146 -182700408 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 395 137 14 0 chr6 6579956 6580029 -182699525 + GA-rich Low_complexity Low_complexity 3 76 0 287 250 10 87 chr6 6580444 6580501 -182699053 + MER21B LTR ERV1 12 59 -804 228 35 0 0 chr6 6580501 6580530 -182699024 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 287 250 10 87 chr6 6580530 6580576 -182698978 + MER21B LTR ERV1 59 107 -756 2694 235 111 26 chr6 6580576 6581342 -182698212 + MER21B LTR ERV1 22 852 -11 883 177 58 22 chr6 6581465 6581691 -182697863 + MER33 DNA MER1_type 9 242 -82 2623 138 52 54 chr6 6581707 6581726 -182697828 - L1MB3 LINE L1 -17 6166 6148 2122 106 0 0 chr6 6581726 6582019 -182697535 - AluSg SINE Alu -17 293 1 2623 138 52 54 chr6 6582019 6582480 -182697074 - L1MB3 LINE L1 -35 6148 5617 2167 110 3 0 chr6 6582480 6582789 -182696765 - AluSg SINE Alu 0 310 1 2623 138 52 54 chr6 6582789 6583060 -182696494 - L1MB3 LINE L1 -566 5617 5347 573 106 0 43 chr6 6583061 6583155 -182696399 + MER33 DNA MER1_type 273 362 -1 2119 110 3 3 chr6 6583577 6583877 -182695677 + AluSq SINE Alu 1 300 -13 2070 119 10 3 chr6 6584326 6584637 -182694917 - AluSq SINE Alu 0 313 1 2187 105 0 3 chr6 6584908 6585221 -182694333 + AluSx SINE Alu 1 312 0 218 300 27 55 chr6 6585383 6585493 -182694061 + MIR SINE MIR 98 204 -58 1617 163 7 14 chr6 6585758 6586053 -182693501 + AluJo SINE Alu 1 293 -19 303 206 98 10 chr6 6587379 6587481 -182692073 + MER53 DNA DNA 10 120 -69 1580 149 7 55 chr6 6587732 6588021 -182691533 + AluJb SINE Alu 3 277 -35 233 268 0 18 chr6 6588024 6588080 -182691474 + GA-rich Low_complexity Low_complexity 4 58 0 312 66 33 33 chr6 6588080 6588141 -182691413 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 336 308 116 27 chr6 6589127 6589273 -182690281 - MIR3 SINE MIR -34 174 16 1180 275 116 27 chr6 6589488 6590084 -182689470 + L2 LINE L2 2188 2836 -478 688 274 128 45 chr6 6590087 6590605 -182688949 - L1MB3 LINE L1 -1005 5141 4559 642 265 157 13 chr6 6590611 6590988 -182688566 - L1MB3 LINE L1 -2196 3950 3520 1163 168 10 14 chr6 6590989 6591198 -182688356 - AluJo SINE Alu -17 295 88 446 286 70 27 chr6 6591203 6591759 -182687795 - L1MB3 LINE L1 -2630 3516 2937 320 302 71 8 chr6 6591891 6592017 -182687537 - L1MEd LINE L1 -5394 725 592 4252 136 18 44 chr6 6592463 6593258 -182686296 - L1MC1 LINE L1 0 6333 5560 198 0 0 0 chr6 6594338 6594360 -182685194 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1784 87 77 45 chr6 6594505 6594792 -182684762 - AluSq SINE Alu -17 296 1 1847 83 8 30 chr6 6595202 6595467 -182684087 + AluSg SINE Alu 42 300 -10 373 239 142 7 chr6 6595548 6595703 -182683851 + L1ME4a LINE L1 5943 6118 -3 1042 109 0 0 chr6 6596047 6596194 -182683360 - AluSq/x SINE Alu -165 148 2 192 363 134 17 chr6 6598273 6598452 -182681102 + L2 LINE L2 1063 1262 -2052 627 255 98 21 chr6 6598706 6599032 -182680522 + HAL1 LINE L1 871 1221 -1286 227 280 0 0 chr6 6599032 6599082 -182680472 - MER45A DNA AcHobo -4 174 125 2010 115 0 3 chr6 6599094 6599380 -182680174 + AluSc SINE Alu 1 285 -24 1011 127 66 71 chr6 6599398 6599610 -182679944 + AluJo SINE Alu 20 230 -82 1188 168 172 27 chr6 6599619 6599881 -182679673 - AluJo SINE Alu -2 300 1 320 140 60 0 chr6 6599942 6599992 -182679562 + AluJo SINE Alu 235 287 -15 299 253 38 0 chr6 6599965 6600044 -182679510 - MER45A DNA AcHobo -35 143 62 * 898 177 100 15 chr6 6600234 6600505 -182679049 + MER33 DNA MER1_type 14 307 -17 354 257 61 20 chr6 6600642 6600790 -182678764 - LTR33A LTR ERVL -14 509 356 233 321 85 0 chr6 6601006 6601112 -182678442 - LTR33A LTR ERVL -350 173 59 710 261 120 53 chr6 6601162 6601728 -182677826 + HAL1 LINE L1 1884 2487 -20 427 276 44 108 chr6 6602225 6602569 -182676985 + MLT1I LTR MaLR 81 402 -7 1266 222 68 31 chr6 6602775 6603127 -182676427 - MLT1A1 LTR MaLR 0 365 1 833 67 0 0 chr6 6603464 6603569 -182675985 + AluY SINE Alu 196 300 -11 2339 103 3 0 chr6 6603847 6604157 -182675397 + AluSx SINE Alu 1 311 -1 1602 97 162 16 chr6 6604159 6604406 -182675148 + AluSx SINE Alu 2 284 -18 196 42 0 0 chr6 6604406 6604430 -182675124 + (CAAA)n Simple_repeat Simple_repeat 2 92 0 487 306 44 14 chr6 6606172 6606397 -182673157 + MLT1J LTR MaLR 311 596 -19 233 127 28 70 chr6 6608002 6608073 -182671481 - L1MD1 LINE L1 -1 6241 6174 1802 226 108 26 chr6 6608185 6608760 -182670794 - L1MD2 LINE L1 -59 6300 5679 5484 244 90 15 chr6 6608775 6610491 -182669063 - L1MD2 LINE L1 -743 5403 3541 1748 252 23 50 chr6 6610491 6611066 -182668488 + MER68 LTR ERV1 2 560 -2 5484 244 90 15 chr6 6611066 6611170 -182668384 - L1MD2 LINE L1 -2605 3541 3446 2464 193 69 30 chr6 6611170 6611760 -182667794 - Tigger7 DNA MER2_type 0 2487 1 2826 239 19 35 chr6 6611760 6611973 -182667581 - L1MD2 LINE L1 -2699 3447 3232 1837 93 0 0 chr6 6611973 6612210 -182667344 - AluY SINE Alu 0 311 75 2826 239 19 35 chr6 6612210 6612729 -182666825 - L1MD2 LINE L1 -2914 3232 2706 1874 147 158 13 chr6 6612729 6613103 -182666451 - MSTA LTR MaLR 0 428 1 9511 124 36 39 chr6 6613103 6614686 -182664868 - MSTA-int LTR MaLR 0 1580 3 1966 144 137 13 chr6 6614688 6615069 -182664485 - MSTA LTR MaLR 0 428 1 2826 239 19 35 chr6 6615069 6615264 -182664290 - L1MD2 LINE L1 -3440 2706 2530 245 273 133 62 chr6 6615265 6615393 -182664161 - MIR SINE MIR -106 156 20 26 0 0 0 chr6 6615977 6616003 -182663551 + AT_rich Low_complexity Low_complexity 1 26 0 539 213 269 0 chr6 6617069 6617229 -182662325 + MER3 DNA MER1_type 1 203 -6 492 202 15 3 chr6 6617257 6617394 -182662160 - MER5A DNA MER1_type -14 175 3 1193 266 113 15 chr6 6617535 6617994 -182661560 + MER69 DNA AcHobo 214 717 -1809 1318 151 106 8 chr6 6618016 6618261 -182661293 - L1PA16 LINE L1 -9 6157 5889 1163 191 131 76 chr6 6618277 6618805 -182660749 + MER69 DNA AcHobo 1969 2525 -1 388 248 16 33 chr6 6618827 6618948 -182660606 + L2 LINE L2 3195 3313 0 1897 132 4 0 chr6 6620954 6621226 -182658328 + AluSc SINE Alu 37 309 0 390 42 0 0 chr6 6621226 6621274 -182658280 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 5469 180 41 27 chr6 6621854 6623972 -182655582 - L1MB4 LINE L1 -37 6143 4015 455 310 104 30 chr6 6624091 6624359 -182655195 + L1MEc LINE L1 245 532 -6075 302 235 98 15 chr6 6624771 6624903 -182654651 + L1MEc LINE L1 999 1141 -5466 * 1741 271 102 13 chr6 6624892 6625726 -182653828 + L1MEc LINE L1 950 2077 -4481 1169 251 44 17 chr6 6625932 6626227 -182653327 + LTR40a LTR ERVL 217 519 0 296 299 31 16 chr6 6626231 6626358 -182653196 + L1MEc LINE L1 2076 2204 -4403 310 156 45 58 chr6 6626358 6626512 -182653042 + (TTATA)n Simple_repeat Simple_repeat 3 154 0 904 190 85 63 chr6 6626529 6626845 -182652709 - MER33 DNA MER1_type 0 324 2 402 235 66 7 chr6 6626845 6626981 -182652573 + L1MEc LINE L1 2270 2413 -4194 514 255 85 7 chr6 6627199 6627352 -182652202 + MIR SINE MIR 2 166 -96 468 208 0 0 chr6 6628110 6628216 -182651338 + (TA)n Simple_repeat Simple_repeat 1 106 0 726 243 0 38 chr6 6628468 6628653 -182650901 + AluJo SINE Alu 122 299 -13 320 207 76 27 chr6 6629559 6629677 -182649877 + L1ME4a LINE L1 5752 5874 -247 258 32 0 0 chr6 6629704 6629735 -182649819 + (TG)n Simple_repeat Simple_repeat 2 32 0 248 275 25 0 chr6 6629735 6629815 -182649739 + L1ME4a LINE L1 5973 6054 -67 231 229 16 16 chr6 6630164 6630225 -182649329 + GA-rich Low_complexity Low_complexity 4 64 0 2077 104 104 21 chr6 6630723 6631059 -182648495 - THE1B LTR MaLR 0 364 1 1537 179 23 29 chr6 6631130 6631438 -182648116 + AluJo SINE Alu 5 310 -2 242 297 158 0 chr6 6632341 6632442 -182647112 + MIR SINE MIR 35 151 -111 945 193 60 32 chr6 6632445 6632694 -182646860 - MER46C DNA MER2_type 0 338 83 317 232 0 49 chr6 6632813 6632895 -182646659 + MIR SINE MIR 155 232 -30 25 0 0 0 chr6 6633772 6633797 -182645757 + AT_rich Low_complexity Low_complexity 1 25 0 374 264 116 8 chr6 6634062 6634183 -182645371 + L2 LINE L2 3180 3313 0 3498 116 43 10 chr6 6634572 6635080 -182644474 - MER1A DNA MER1_type 0 527 3 247 67 67 0 chr6 6635545 6635590 -182643964 + CT-rich Low_complexity Low_complexity 4 51 0 2312 115 0 0 chr6 6635850 6636145 -182643409 + AluSx SINE Alu 5 299 -13 790 185 25 0 chr6 6636693 6636855 -182642699 + MER5A DNA MER1_type 1 166 -23 355 250 72 33 chr6 6636734 6636886 -182642668 - MER5A DNA MER1_type -31 158 1 * 1991 156 23 25 chr6 6637047 6637400 -182642154 + MLT1A1 LTR MaLR 13 364 -1 843 181 32 27 chr6 6637812 6638000 -182641554 - MER5A DNA MER1_type 0 189 1 1622 138 98 41 chr6 6640035 6640314 -182639240 - MLT1B LTR MaLR 0 390 89 2250 116 13 0 chr6 6640314 6640617 -182638937 + AluSp SINE Alu 1 307 -6 1622 138 98 41 chr6 6640617 6640654 -182638900 - MLT1B LTR MaLR -301 89 56 583 175 0 10 chr6 6640654 6640751 -182638803 - Tigger7 DNA MER2_type -2 2485 2390 1167 218 75 0 chr6 6640752 6640991 -182638563 - Tigger7 DNA MER2_type -468 265 9 362 143 18 0 chr6 6640998 6641054 -182638500 - MLT1B LTR MaLR -330 60 4 346 178 11 67 chr6 6642063 6642153 -182637401 - MIR SINE MIR -112 150 66 1520 216 49 6 chr6 6643020 6643367 -182636187 + MLT1A1 LTR MaLR 1 362 -3 1816 186 132 13 chr6 6643511 6643958 -182635596 - MLT1D LTR MaLR 0 505 6 212 204 161 21 chr6 6643963 6644056 -182635498 + MIR SINE MIR 140 245 -17 1346 199 69 22 chr6 6644713 6645030 -182634524 + MER58B DNA MER1_type 10 341 0 235 298 161 0 chr6 6645263 6645387 -182634167 - MIR SINE MIR -70 192 49 293 291 0 25 chr6 6645561 6645640 -182633914 + G-rich Low_complexity Low_complexity 1 77 0 636 192 21 21 chr6 6645644 6645956 -182633598 + GA-rich Low_complexity Low_complexity 1 312 0 181 313 35 56 chr6 6650170 6650314 -182629240 - MIR3 SINE MIR -3 205 65 2166 123 3 3 chr6 6650784 6651094 -182628460 + AluSx SINE Alu 3 312 0 2461 73 7 0 chr6 6651915 6652218 -182627336 + AluY SINE Alu 1 305 -6 736 284 46 17 chr6 6652251 6652490 -182627064 - Charlie8 DNA MER1_type -2171 246 1 1395 258 86 5 chr6 6652984 6653368 -182626186 - LTR16C LTR ERVL -6 485 71 1865 223 6 0 chr6 6653389 6653752 -182625802 - MLT1A1 LTR MaLR 0 365 1 1120 274 94 105 chr6 6653916 6654107 -182625447 + L1MEd LINE L1 453 645 -5885 207 0 0 0 chr6 6654107 6654130 -182625424 + (CA)n Simple_repeat Simple_repeat 2 24 0 1120 274 94 105 chr6 6654130 6654305 -182625249 + L1MEd LINE L1 645 820 -5710 23 54 0 0 chr6 6654305 6654342 -182625212 + AT_rich Low_complexity Low_complexity 1 37 0 1120 274 94 105 chr6 6654342 6655155 -182624399 + L1MEd LINE L1 820 1656 -4874 834 249 63 103 chr6 6655673 6656130 -182623424 - MLT1F LTR MaLR 0 542 104 3868 143 67 45 chr6 6656131 6657447 -182622107 - pTR5 LTR ERV1 0 2438 760 376 222 145 0 chr6 6657447 6657564 -182621990 - MLT1F LTR MaLR -453 140 7 723 180 0 0 chr6 6657676 6657815 -182621739 + L1MB2 LINE L1 6033 6171 0 432 242 131 79 chr6 6657959 6658092 -182621462 + L1MEd LINE L1 2385 2510 -4030 2146 111 16 0 chr6 6658092 6658399 -182621155 + AluSx SINE Alu 1 312 0 432 242 131 79 chr6 6658399 6658517 -182621037 + L1MEd LINE L1 2510 2649 -3891 707 247 75 45 chr6 6658517 6658784 -182620770 + L1M4 LINE L1 4015 4289 -1857 356 269 61 19 chr6 6658826 6658987 -182620567 - L1MB5 LINE L1 -332 5842 5677 186 238 109 59 chr6 6660261 6660362 -182619192 + MER5C DNA MER1_type 90 195 -129 794 134 34 0 chr6 6660441 6660560 -182618994 - FLAM_C SINE Alu -19 124 2 644 277 107 12 chr6 6660569 6660822 -182618732 + L1MD2 LINE L1 6083 6359 0 441 291 68 0 chr6 6661827 6661975 -182617579 + MIR SINE MIR 105 262 0 239 278 33 33 chr6 6662183 6662273 -182617281 + L2 LINE L2 3203 3292 -21 8872 137 68 41 chr6 6662627 6664279 -182615275 - pTR5 LTR ERV1 0 2438 741 595 207 79 12 chr6 6665622 6665786 -182613768 + MER5B DNA MER1_type 1 175 -3 2101 113 7 0 chr6 6665914 6666214 -182613340 + AluSx SINE Alu 1 302 -10 695 196 0 23 chr6 6666222 6666355 -182613199 + FLAM_C SINE Alu 4 133 0 221 313 12 12 chr6 6666511 6666594 -182612960 - MIR SINE MIR -12 250 168 210 316 38 0 chr6 6667724 6667803 -182611751 + L2 LINE L2 3231 3312 -1 198 24 24 49 chr6 6668288 6668329 -182611225 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2142 95 0 0 chr6 6668331 6668615 -182610939 - AluSx SINE Alu -28 284 1 233 71 0 0 chr6 6669854 6669882 -182609672 + MLT2C2 LTR ERVL 430 457 -7 315 209 27 0 chr6 6670288 6670398 -182609156 + GA-rich Low_complexity Low_complexity 2 114 0 854 227 39 0 chr6 6670618 6670821 -182608733 + L1MD2 LINE L1 6139 6349 -10 1069 184 23 14 chr6 6671973 6672190 -182607364 + MER20 DNA MER1_type 1 219 0 387 297 31 8 chr6 6673418 6673546 -182606008 + MIR SINE MIR 48 178 -84 511 250 275 18 chr6 6673557 6673837 -182605717 - LTR50 LTR ERVL -7 788 437 329 184 289 13 chr6 6673920 6674072 -182605482 - LTR50 LTR ERVL -581 214 21 235 231 62 31 chr6 6674089 6674154 -182605400 - L2 LINE L2 0 3272 3206 441 81 0 0 chr6 6674849 6674911 -182604643 + (GGATG)n Simple_repeat Simple_repeat 2 63 0 186 391 0 0 chr6 6676163 6676232 -182603322 + L2 LINE L2 3188 3256 -16 279 272 133 89 chr6 6676958 6677138 -182602416 + MIR SINE MIR 32 219 -43 268 356 60 20 chr6 6677987 6678136 -182601418 + L2 LINE L2 3096 3250 -22 771 243 65 9 chr6 6678154 6678368 -182601186 - MIR SINE MIR -3 259 34 513 160 0 25 chr6 6678709 6678828 -182600726 + CT-rich Low_complexity Low_complexity 3 118 0 267 122 0 0 chr6 6678999 6679048 -182600506 + (TC)n Simple_repeat Simple_repeat 2 50 0 259 297 59 25 chr6 6679165 6679283 -182600271 + L2 LINE L2 3180 3301 -12 468 293 79 11 chr6 6680294 6680560 -182598994 + L1ME4a LINE L1 5732 6015 -106 440 215 8 108 chr6 6681190 6681226 -182598328 + MER5B DNA MER1_type 1 39 -139 1030 191 14 101 chr6 6681226 6681581 -182597973 + MER33 DNA MER1_type 1 324 0 440 215 8 108 chr6 6681581 6681674 -182597880 + MER5B DNA MER1_type 39 117 -61 317 215 177 13 chr6 6681740 6681819 -182597735 - MIR SINE MIR -115 147 56 1023 143 7 7 chr6 6681995 6682149 -182597405 + MER5A DNA MER1_type 1 154 -35 667 187 112 8 chr6 6682155 6682289 -182597265 - MER58B DNA MER1_type -5 336 189 398 151 0 0 chr6 6682354 6682427 -182597127 - MER58B DNA MER1_type -161 180 108 185 262 0 0 chr6 6682438 6682480 -182597074 + MER5A DNA MER1_type 148 189 0 212 259 68 91 chr6 6682689 6682913 -182596641 + MIR3 SINE MIR 1 216 -46 347 156 0 56 chr6 6683861 6683951 -182595603 - L1PA3 LINE L1 -1 6154 6070 834 148 55 39 chr6 6683970 6684152 -182595402 - L1PA11 LINE L1 -80 6094 5910 1386 168 24 108 chr6 6685657 6686027 -182593527 - MER44D DNA MER2_type 0 609 1 889 210 11 0 chr6 6686468 6686654 -182592900 - MER5A DNA MER1_type 0 189 2 916 279 30 4 chr6 6686654 6686891 -182592663 + MIR SINE MIR 8 250 -12 2346 65 3 7 chr6 6687479 6687785 -182591769 - AluY SINE Alu -6 305 1 1386 191 48 22 chr6 6688580 6688894 -182590660 + MER33 DNA MER1_type 3 324 0 955 223 30 0 chr6 6688903 6689100 -182590454 - MER3 DNA MER1_type -1 208 6 2136 36 0 0 chr6 6689132 6689380 -182590174 - L1PA3 LINE L1 0 6155 5908 2298 15 0 11 chr6 6689380 6689646 -182589908 + L1PA3 LINE L1 5622 5884 -271 1889 218 130 2 chr6 6689868 6690300 -182589254 - MLT1D LTR MaLR 0 505 19 864 154 0 0 chr6 6690750 6690893 -182588661 + FLAM_C SINE Alu 1 143 0 1463 176 29 13 chr6 6690912 6691219 -182588335 + AluJo SINE Alu 1 312 0 304 269 0 0 chr6 6692168 6692235 -182587319 - MER91A DNA MER1_type -1 195 129 216 319 21 21 chr6 6692647 6692741 -182586813 - MER91A DNA MER1_type -67 129 36 1143 87 0 25 chr6 6693540 6693701 -182585853 - L1MA9 LINE L1 -623 5689 5533 2247 159 80 9 chr6 6693712 6694139 -182585415 + L1MA9 LINE L1 5705 6161 -151 300 273 0 0 chr6 6694139 6694260 -182585294 + (CA)n Simple_repeat Simple_repeat 1 121 0 352 113 0 42 chr6 6694287 6694358 -182585196 + L1MA9 LINE L1 6245 6312 0 1528 145 67 28 chr6 6694716 6694998 -182584556 + AluJb SINE Alu 1 293 -19 187 107 0 0 chr6 6695305 6695333 -182584221 - L3b LINE CR1 -12 1571 1544 490 308 79 23 chr6 6695786 6696000 -182583554 - MIR SINE MIR -2 260 35 319 273 33 8 chr6 6696243 6696364 -182583190 - LTR67 LTR ERVL -1 556 433 212 309 53 11 chr6 6696533 6696627 -182582927 + MER91C DNA MER1_type 31 128 -12 417 267 99 0 chr6 6696695 6696796 -182582758 - MIR SINE MIR -144 118 8 3324 313 125 21 chr6 6696868 6698438 -182581116 + L2 LINE L2 670 2528 -785 420 20 0 0 chr6 6698438 6698487 -182581067 + (CA)n Simple_repeat Simple_repeat 1 49 0 3324 313 125 21 chr6 6698487 6699104 -182580450 + L2 LINE L2 2528 3079 -234 425 257 124 92 chr6 6699117 6699335 -182580219 - MIR SINE MIR -5 257 33 483 291 88 48 chr6 6699340 6699463 -182580091 + L2 LINE L2 3078 3195 -118 2438 146 3 3 chr6 6699463 6699827 -182579727 - THE1B LTR MaLR 0 364 1 483 291 88 48 chr6 6699827 6699930 -182579624 + L2 LINE L2 3195 3313 0 233 197 15 61 chr6 6700194 6700260 -182579294 + GA-rich Low_complexity Low_complexity 1 63 0 2015 96 7 0 chr6 6700815 6701087 -182578467 - AluSg SINE Alu -16 294 21 433 155 0 0 chr6 6701164 6701235 -182578319 - L1MA4A LINE L1 -43 6260 6190 2656 119 19 5 chr6 6701237 6701665 -182577889 - L1MA4A LINE L1 -184 6119 5686 2178 114 0 0 chr6 6702248 6702556 -182576998 + AluSx SINE Alu 1 308 -4 288 254 58 78 chr6 6703674 6703879 -182575675 - L3 LINE CR1 -163 1414 1214 1033 251 165 4 chr6 6704158 6704613 -182574941 + L2 LINE L2 2380 2907 -407 715 280 34 62 chr6 6704645 6704966 -182574588 + L2 LINE L2 2995 3306 -7 180 111 0 0 chr6 6706595 6706622 -182572932 + (GA)n Simple_repeat Simple_repeat 1 27 0 452 280 119 76 chr6 6707431 6707780 -182571774 - MLT1K LTR MaLR -17 571 197 2256 113 17 210 chr6 6707780 6708384 -182571170 + LTR45B LTR ERV1 3 489 0 452 280 119 76 chr6 6708384 6708481 -182571073 - MLT1K LTR MaLR -391 197 106 717 261 99 9 chr6 6708567 6708789 -182570765 + MIR SINE MIR 21 262 0 2301 87 0 13 chr6 6709109 6709418 -182570136 + AluSx SINE Alu 1 305 -7 349 282 100 36 chr6 6710248 6710468 -182569086 - MIR SINE MIR -9 253 20 194 352 45 11 chr6 6710764 6710852 -182568702 - L2 LINE L2 -1 3312 3222 280 272 51 4 chr6 6712438 6712535 -182567019 - MER91A DNA MER1_type -2 188 90 523 218 18 9 chr6 6712565 6712675 -182566879 - MER91A DNA MER1_type -81 115 5 408 265 86 124 chr6 6713058 6713315 -182566239 + L2 LINE L2 3023 3269 -3 1663 189 66 76 chr6 6713349 6713821 -182565733 - MLT1C LTR MaLR 0 467 1 249 338 144 7 chr6 6713843 6713982 -182565572 - MIR SINE MIR -71 191 34 186 276 236 24 chr6 6713999 6714122 -182565432 + MIR SINE MIR 10 158 -104 556 259 37 12 chr6 6714763 6714924 -182564630 + MIR SINE MIR 22 186 -63 644 111 96 15 chr6 6715112 6715247 -182564307 + L1MB3 LINE L1 6034 6179 -4 1961 106 7 0 chr6 6715523 6715832 -182563722 - AluSx SINE Alu 0 311 1 433 60 15 0 chr6 6715848 6715915 -182563639 + L1MB2 LINE L1 6103 6170 -1 322 305 188 8 chr6 6717180 6717308 -182562246 + MIR3 SINE MIR 51 201 -7 299 231 15 0 chr6 6718553 6718618 -182560936 + MER63 DNA MER1_type 685 750 -311 34984 84 7 10 chr6 6718635 6723420 -182556134 + L1P LINE L1 11 4780 -1366 237 277 0 15 chr6 6723422 6723487 -182556067 + L2 LINE L2 3205 3268 -4 1354 175 34 14 chr6 6723943 6724235 -182555319 - MER33 DNA MER1_type -24 300 3 523 290 45 57 chr6 6724270 6724504 -182555050 - MIR SINE MIR 0 262 37 2232 54 7 10 chr6 6724614 6724908 -182554646 + AluY SINE Alu 1 293 -18 270 0 0 0 chr6 6724950 6724980 -182554574 + (TG)n Simple_repeat Simple_repeat 2 31 0 1963 120 0 0 chr6 6724980 6725263 -182554291 - AluSx SINE Alu -29 283 1 971 256 127 9 chr6 6725806 6726122 -182553432 - MLT1J LTR MaLR -4 507 155 304 231 33 165 chr6 6726135 6726226 -182553328 - MLT1E LTR MaLR -244 410 250 314 203 17 0 chr6 6726297 6726356 -182553198 + LTR16B LTR ERVL 1 60 -404 635 152 7 80 chr6 6726358 6726496 -182553058 + FRAM SINE Alu 27 154 -22 2067 117 0 0 chr6 6726514 6726812 -182552742 + AluSc SINE Alu 2 299 -10 2269 81 3 0 chr6 6728054 6728350 -182551204 - AluSp SINE Alu -16 297 1 428 291 126 0 chr6 6728784 6728935 -182550619 + MIR SINE MIR 92 261 -1 246 156 0 0 chr6 6729031 6729076 -182550478 + (CA)n Simple_repeat Simple_repeat 2 46 0 301 302 51 51 chr6 6729906 6730121 -182549433 - L2 LINE L2 -373 2941 2727 25 31 0 0 chr6 6730788 6730820 -182548734 + AT_rich Low_complexity Low_complexity 1 32 0 1278 232 38 55 chr6 6731290 6731742 -182547812 - HsTC2 DNA Tc2 0 1900 1281 516 340 21 5 chr6 6732153 6732341 -182547213 + MIR SINE MIR 20 210 -52 196 330 70 9 chr6 6732988 6733103 -182546451 + MIR SINE MIR 69 190 -72 2502 56 0 0 chr6 6733275 6733578 -182545976 + AluSq SINE Alu 1 303 -10 527 211 24 0 chr6 6733594 6733760 -182545794 + CT-rich Low_complexity Low_complexity 1 170 0 272 200 0 0 chr6 6734490 6734540 -182545014 - MER103 DNA DNA -53 113 64 4375 206 109 8 chr6 6734845 6735824 -182543730 + Tigger6a DNA MER2_type 1 1078 -5 2231 163 10 3 chr6 6736719 6737106 -182542448 - MLT1B LTR MaLR 0 390 1 251 348 54 49 chr6 6737183 6737367 -182542187 + L2 LINE L2 2175 2359 -955 3994 138 19 32 chr6 6738144 6738868 -182540686 - L1PA16 LINE L1 -17 6149 5435 189 0 0 0 chr6 6739019 6739040 -182540514 + (CA)n Simple_repeat Simple_repeat 2 22 0 323 282 12 0 chr6 6739708 6739793 -182539761 + (TG)n Simple_repeat Simple_repeat 1 86 0 724 133 106 72 chr6 6740531 6740711 -182538843 - MLT1C LTR MaLR -279 188 3 4002 322 40 26 chr6 6740715 6742165 -182537389 + HERV16 LTR ERVL 1854 3323 -1673 2167 124 0 0 chr6 6743829 6744136 -182535418 + AluSg SINE Alu 1 307 -3 4422 136 58 22 chr6 6744950 6745706 -182533848 - LTR1 LTR ERV1 -2 783 1 304 265 20 61 chr6 6746160 6746258 -182533296 - MER5A DNA MER1_type -56 133 40 283 274 0 0 chr6 6747423 6747496 -182532058 + MER116 DNA Mariner 8 80 0 448 200 89 0 chr6 6747700 6747790 -182531764 + MER5A DNA MER1_type 9 106 -83 389 185 43 0 chr6 6748031 6748123 -182531431 - MLT1F LTR MaLR 0 542 447 * 637 230 0 15 chr6 6748094 6748229 -182531325 - MLT1E LTR MaLR -460 133 1 568 250 59 13 chr6 6748372 6748524 -182531030 + MER5B DNA MER1_type 17 175 -3 2112 98 13 10 chr6 6748532 6748837 -182530717 + AluSx SINE Alu 1 306 -6 211 170 0 43 chr6 6749105 6749152 -182530402 + GA-rich Low_complexity Low_complexity 4 48 0 2403 161 22 18 chr6 6749160 6749600 -182529954 + L1MC1 LINE L1 5882 6324 -4 1603 170 25 3 chr6 6749600 6749883 -182529671 - AluJb SINE Alu -22 290 2 23 0 0 0 chr6 6749888 6749911 -182529643 + AT_rich Low_complexity Low_complexity 1 23 0 388 296 170 6 chr6 6750033 6750192 -182529362 - MIR3 SINE MIR -6 202 18 821 144 24 0 chr6 6751908 6752033 -182527521 + FLAM_C SINE Alu 1 128 -15 2733 7 0 7 chr6 6752904 6753214 -182526340 + AluY SINE Alu 1 308 -3 251 205 33 131 chr6 6753624 6753746 -182525808 + MIR3 SINE MIR 51 160 -48 215 280 0 0 chr6 6753967 6754017 -182525537 + MIR3 SINE MIR 153 202 -6 2015 132 7 13 chr6 6754501 6754811 -182524743 + AluSx SINE Alu 1 308 -4 443 311 86 5 chr6 6755616 6755838 -182523716 - MLT1L LTR MaLR -1 614 375 2295 218 51 19 chr6 6755871 6756377 -182523177 + MER45B DNA AcHobo 1 526 -514 2208 116 13 3 chr6 6756377 6756687 -182522867 + AluSq SINE Alu 1 313 0 2295 218 51 19 chr6 6756687 6756707 -182522847 + MER45B DNA AcHobo 526 544 -496 793 209 0 7 chr6 6757293 6757446 -182522108 + FRAM SINE Alu 17 168 -8 24 32 0 0 chr6 6757446 6757477 -182522077 + AT_rich Low_complexity Low_complexity 1 31 0 202 273 68 11 chr6 6757958 6758046 -182521508 - MIR SINE MIR -97 111 19 1090 186 14 18 chr6 6758273 6758493 -182521061 - MER20 DNA MER1_type 0 219 1 357 244 33 0 chr6 6758637 6758727 -182520827 - MER92C-int LTR ERV1 -4163 2638 2546 2115 107 0 69 chr6 6758771 6759090 -182520464 + AluSx SINE Alu 1 297 -15 251 299 0 31 chr6 6761323 6761420 -182518134 - MER92C-int LTR ERV1 -4770 166 73 1281 251 72 55 chr6 6761522 6761907 -182517647 - MER92C LTR ERV1 -2 552 154 1912 159 59 14 chr6 6761907 6762278 -182517276 - MLT1B LTR MaLR -2 388 1 1281 251 72 55 chr6 6762278 6762435 -182517119 - MER92C LTR ERV1 -400 154 1 1107 159 68 19 chr6 6764381 6764588 -182514966 + AluJo SINE Alu 85 301 -11 225 0 0 0 chr6 6765440 6765465 -182514089 + (A)n Simple_repeat Simple_repeat 1 25 0 1132 136 16 0 chr6 6766237 6766421 -182513133 + L1MA4 LINE L1 6107 6293 -7 2828 7 0 0 chr6 6766440 6766738 -182512816 + AluYa5 SINE Alu 1 298 -13 207 0 0 0 chr6 6766738 6766761 -182512793 + (TA)n Simple_repeat Simple_repeat 2 24 0 2140 101 3 11 chr6 6767032 6767318 -182512236 + AluSx SINE Alu 2 285 -27 857 185 143 21 chr6 6767843 6768032 -182511522 - MER20 DNA MER1_type 0 219 8 706 184 93 93 chr6 6768046 6768367 -182511187 + MER33 DNA MER1_type 1 321 -3 2092 105 10 3 chr6 6768947 6769241 -182510313 - AluSq SINE Alu -13 300 5 207 0 0 0 chr6 6769669 6769692 -182509862 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 307 324 9 0 chr6 6769932 6770037 -182509517 - MIR SINE MIR -67 141 36 473 285 41 60 chr6 6770990 6771085 -182508469 + L1ME3A LINE L1 5852 5947 -223 3125 186 20 8 chr6 6771085 6771691 -182507863 + L1MB3 LINE L1 5565 6177 -6 473 285 41 60 chr6 6771691 6771914 -182507640 + L1ME3A LINE L1 5947 6164 -6 190 302 139 12 chr6 6772769 6772855 -182506699 - MIR3 SINE MIR -48 160 64 1775 164 19 13 chr6 6772855 6773165 -182506389 + AluJo SINE Alu 1 312 0 280 275 80 22 chr6 6777240 6777378 -182502176 + MIR SINE MIR 117 262 0 205 291 236 6 chr6 6777497 6777662 -182501892 - L3 LINE CR1 -145 1432 1230 2024 138 0 7 chr6 6777671 6777967 -182501587 - AluY SINE Alu -17 294 1 2265 116 0 3 chr6 6777967 6778268 -182501286 - AluSx SINE Alu -12 300 1 412 296 108 35 chr6 6778367 6778738 -182500816 - L3 LINE CR1 -567 1010 613 345 318 139 9 chr6 6779813 6780036 -182499518 + MER112 DNA MER1_type 1 252 -8 404 278 56 0 chr6 6780054 6780180 -182499374 + HAL1 LINE L1 11 143 -2364 436 299 41 7 chr6 6780601 6780748 -182498806 + MLT1L LTR MaLR 428 579 -36 872 286 64 13 chr6 6780756 6781133 -182498421 + HAL1 LINE L1 1379 1774 -733 5082 114 23 13 chr6 6781935 6782706 -182496848 + MER4E LTR ERV1 1 779 0 5109 34 0 0 chr6 6783257 6783848 -182495706 - LTR10C LTR ERV1 0 591 1 4553 174 29 50 chr6 6787002 6788480 -182491074 + L1MA9 LINE L1 4721 6174 -181 357 24 0 0 chr6 6788480 6788522 -182491032 + (CA)n Simple_repeat Simple_repeat 1 42 0 4553 174 29 50 chr6 6788522 6788701 -182490853 + L1MA9 LINE L1 6174 6355 0 2417 233 49 60 chr6 6788709 6789712 -182489842 + L1ME3 LINE L1 5172 6161 -1 276 303 57 25 chr6 6789801 6789923 -182489631 + L2 LINE L2 3179 3304 -9 572 265 85 51 chr6 6792007 6792301 -182487253 + L2 LINE L2 3010 3313 0 573 246 0 9 chr6 6792420 6792534 -182487020 + MER81 DNA DNA 1 113 -1 404 297 76 51 chr6 6792620 6792896 -182486658 + LTR33 LTR ERVL 236 518 -3 259 292 153 0 chr6 6792951 6793088 -182486466 + MIR SINE MIR 97 254 -8 207 100 0 0 chr6 6793776 6793806 -182485748 + (CA)n Simple_repeat Simple_repeat 1 30 0 759 169 80 85 chr6 6793953 6794154 -182485400 + MLT1C LTR MaLR 53 252 -215 1294 96 0 0 chr6 6794154 6794321 -182485233 - L1PA13 LINE L1 -485 5678 5512 3179 120 2 0 chr6 6794325 6794792 -182484762 + L1PA13 LINE L1 5694 6161 -2 666 249 124 5 chr6 6794807 6795008 -182484546 + MLT1C LTR MaLR 278 502 -3 405 269 144 6 chr6 6795951 6796118 -182483436 + LTR33 LTR ERVL 1 190 -331 349 319 22 0 chr6 6796206 6796341 -182483213 + LTR33 LTR ERVL 339 476 -45 196 318 45 23 chr6 6796517 6796605 -182482949 + MIR SINE MIR 110 199 -63 780 160 15 0 chr6 6798078 6798209 -182481345 + FRAM SINE Alu 19 151 -25 22 56 0 0 chr6 6798337 6798373 -182481181 + AT_rich Low_complexity Low_complexity 1 36 0 210 182 23 0 chr6 6798432 6798476 -182481078 + T-rich Low_complexity Low_complexity 4 48 0 2150 129 0 13 chr6 6798482 6798791 -182480763 - AluSx SINE Alu -7 305 1 202 245 19 19 chr6 6799661 6799714 -182479840 + L2 LINE L2 3214 3266 -6 669 174 174 6 chr6 6799827 6799988 -182479566 - MER5A DNA MER1_type 0 189 2 25 0 0 0 chr6 6800055 6800080 -182479474 + AT_rich Low_complexity Low_complexity 1 25 0 323 94 0 19 chr6 6803722 6803775 -182475779 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 1445 271 139 35 chr6 6804602 6805567 -182473987 + HAL1 LINE L1 812 1876 -631 277 277 0 42 chr6 6806008 6806127 -182473427 + HAL1b LINE L1 745 858 -490 180 200 0 0 chr6 6806232 6806272 -182473282 + GA-rich Low_complexity Low_complexity 4 43 0 352 238 59 10 chr6 6806335 6806436 -182473118 - LTR67 LTR ERVL -3 554 449 440 310 50 54 chr6 6806716 6806977 -182472577 - LTR67 LTR ERVL -296 261 2 22 0 0 0 chr6 6807213 6807235 -182472319 + AT_rich Low_complexity Low_complexity 1 22 0 460 225 11 0 chr6 6807830 6807919 -182471635 - L2 LINE L2 0 3272 3183 327 240 101 78 chr6 6807945 6808162 -182471392 + MIR SINE MIR 3 224 -38 236 357 35 28 chr6 6808235 6808378 -182471176 - L2 LINE L2 -180 3092 2949 423 305 135 9 chr6 6809627 6809945 -182469609 - L2 LINE L2 -1088 2226 1869 220 221 221 18 chr6 6810003 6810116 -182469438 - MIR SINE MIR -49 213 78 357 269 50 0 chr6 6810970 6811089 -182468465 + L1ME LINE L1 5619 5743 -378 566 75 12 12 chr6 6811089 6811169 -182468385 - MADE1 DNA Mariner 0 80 1 561 325 30 26 chr6 6811244 6811512 -182468042 - L1MC/D LINE L1 -2188 5689 5421 746 124 0 0 chr6 6811540 6811645 -182467909 + AluJb SINE Alu 9 113 -199 889 124 12 0 chr6 6811645 6811806 -182467748 + (GAAA)n Simple_repeat Simple_repeat 1 163 0 329 317 0 0 chr6 6812272 6812414 -182467140 - L1MC/D LINE L1 -1333 4882 4741 307 157 0 0 chr6 6813272 6813323 -182466231 - MLT-int LTR MaLR -1006 729 679 258 279 0 0 chr6 6813385 6813446 -182466108 - MLT1-int LTR MaLR -487 884 824 * 2074 194 37 31 chr6 6813435 6813920 -182465634 - MLT1-int LTR MaLR -660 711 224 1901 212 107 1 chr6 6813933 6814613 -182464941 - L1MEc LINE L1 -3423 2792 2071 40 59 0 0 chr6 6814671 6814739 -182464815 + AT_rich Low_complexity Low_complexity 1 68 0 875 258 65 108 chr6 6814815 6815295 -182464259 - LTR40b LTR ERVL 0 462 4 1087 238 34 3 chr6 6815298 6815635 -182463919 - HERVL40 LTR ERVL 0 5530 2784 270 330 45 17 chr6 6815504 6815680 -182463874 - MER89-int LTR ERV1 -291 6510 6330 * 256 275 78 60 chr6 6815609 6815892 -182463662 - HERVL40 LTR ERVL -256 2781 2740 * 513 263 51 110 chr6 6816059 6816413 -182463141 - HERVL40 LTR ERVL -328 2709 2377 2175 240 79 3 chr6 6816566 6817146 -182462408 - HERVL40 LTR ERVL -874 4656 1844 753 303 5 10 chr6 6817162 6817370 -182462184 - HERVL40 LTR ERVL -2159 3371 3165 2085 139 3 0 chr6 6819459 6819760 -182459794 + AluSq SINE Alu 2 303 -10 192 273 74 33 chr6 6821511 6821632 -182457922 + MER5A DNA MER1_type 43 168 -21 2107 114 29 0 chr6 6821915 6822195 -182457359 + AluSc SINE Alu 1 288 -21 416 332 44 22 chr6 6823992 6824263 -182455291 - L2 LINE L2 -191 3081 2805 2676 70 11 8 chr6 6824385 6824740 -182454814 + L1PA11 LINE L1 5819 6174 0 2371 89 3 3 chr6 6824997 6825300 -182454254 - AluSq SINE Alu -10 303 1 1427 140 91 7 chr6 6825849 6826134 -182453420 + L1MB2 LINE L1 5771 6079 -92 304 249 6 6 chr6 6826425 6826602 -182452952 + (CA)n Simple_repeat Simple_repeat 1 177 0 364 290 50 40 chr6 6826917 6827117 -182452437 - MIR SINE MIR -41 221 20 1741 60 5 0 chr6 6827536 6827751 -182451803 - L1PA5 LINE L1 -164 5990 5775 1049 52 0 15 chr6 6827751 6827885 -182451669 + L1PA5 LINE L1 6021 6154 0 1638 202 0 3 chr6 6828547 6828829 -182450725 + AluJb SINE Alu 1 281 -31 243 0 0 0 chr6 6828834 6828861 -182450693 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 584 245 130 37 chr6 6829273 6829571 -182449983 - LTR16A1 LTR ERVL -2 455 155 253 232 0 0 chr6 6829781 6829837 -182449717 + MIR SINE MIR 129 184 -78 595 283 123 41 chr6 6831556 6832458 -182447096 + L1ME3A LINE L1 4562 5546 -747 386 241 208 70 chr6 6832626 6832996 -182446558 + MLT1H LTR MaLR 129 549 0 585 322 130 25 chr6 6833168 6833491 -182446063 + MLT1L LTR MaLR 215 571 -44 346 386 40 18 chr6 6833558 6833849 -182445705 + L1ME3A LINE L1 5655 5950 -220 594 229 8 0 chr6 6834031 6834153 -182445401 - FLAM_C SINE Alu -19 124 2 1316 214 106 106 chr6 6834156 6834655 -182444899 - MLT1F1 LTR MaLR -43 524 1 288 377 41 0 chr6 6837108 6837254 -182442300 + L3 LINE CR1 890 1041 -536 436 235 182 0 chr6 6837467 6837599 -182441955 + L3 LINE CR1 1049 1204 -373 399 311 82 25 chr6 6837712 6837956 -182441598 + L1ME LINE L1 5405 5662 -459 203 179 0 0 chr6 6837991 6838030 -182441524 + A-rich Low_complexity Low_complexity 1 39 0 447 338 64 0 chr6 6838074 6838293 -182441261 - MIR SINE MIR -7 255 23 219 225 62 25 chr6 6838412 6838492 -182441062 - L3 LINE CR1 -1377 200 118 243 0 0 0 chr6 6838680 6838707 -182440847 + (A)n Simple_repeat Simple_repeat 1 27 0 2042 89 64 11 chr6 6840612 6840759 -182438795 - AluSq SINE Alu -17 296 158 2419 96 0 0 chr6 6840759 6841060 -182438494 - AluSg SINE Alu -9 301 1 2042 89 64 11 chr6 6841060 6841193 -182438361 - AluSq SINE Alu -155 158 1 21 0 0 0 chr6 6841233 6841254 -182438300 + AT_rich Low_complexity Low_complexity 1 21 0 509 83 0 0 chr6 6841510 6841582 -182437972 - AluS SINE Alu -238 74 3 21 0 0 0 chr6 6841755 6841776 -182437778 + AT_rich Low_complexity Low_complexity 1 21 0 1041 134 0 0 chr6 6841776 6841925 -182437629 - AluJo SINE Alu -30 282 134 296 100 0 20 chr6 6842007 6842057 -182437497 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 1326 215 39 16 chr6 6842199 6842511 -182437043 + MER33 DNA MER1_type 6 324 0 594 236 121 0 chr6 6844250 6844432 -182435122 + MIR SINE MIR 33 236 -26 198 279 63 0 chr6 6844513 6844592 -182434962 + MER5A DNA MER1_type 33 116 -73 223 278 56 0 chr6 6845252 6845342 -182434212 - L2 LINE L2 -2 3311 3217 536 250 71 95 chr6 6845538 6845795 -182433759 + L2 LINE L2 2830 3092 -221 1230 202 73 35 chr6 6845795 6846082 -182433472 - AluJb SINE Alu -3 299 2 2388 105 0 6 chr6 6846086 6846400 -182433154 - AluSx SINE Alu 0 312 1 536 250 71 95 chr6 6846400 6846413 -182433141 + L2 LINE L2 3095 3107 -206 665 144 127 0 chr6 6846413 6846531 -182433023 - AluJo SINE Alu -169 133 1 536 250 71 95 chr6 6846531 6846750 -182432804 + L2 LINE L2 3107 3313 0 2078 105 10 10 chr6 6847048 6847342 -182432212 - AluSx SINE Alu -18 294 1 213 200 71 14 chr6 6848192 6848262 -182431292 + MIR SINE MIR 38 111 -97 407 200 14 117 chr6 6848297 6848339 -182431215 + L2 LINE L2 3183 3228 -85 2206 133 0 13 chr6 6848339 6848656 -182430898 - AluSq SINE Alu 0 313 1 407 200 14 117 chr6 6848656 6848758 -182430796 + L2 LINE L2 3228 3312 -1 830 201 12 6 chr6 6848963 6849127 -182430427 - MER58B DNA MER1_type 0 341 177 1273 203 8 4 chr6 6849127 6849364 -182430190 - MER8 DNA MER2_type 0 239 2 591 281 77 108 chr6 6850354 6850431 -182429123 - MLT1K LTR MaLR 0 588 510 653 178 31 8 chr6 6850431 6850560 -182428994 + FLAM_C SINE Alu 2 133 0 591 281 77 108 chr6 6850560 6850952 -182428602 - MLT1K LTR MaLR -78 510 134 2327 90 0 3 chr6 6851261 6851561 -182427993 - AluSc SINE Alu -10 299 1 1588 105 5 0 chr6 6851911 6852121 -182427433 + AluSg/x SINE Alu 83 293 -17 633 177 18 0 chr6 6852140 6852253 -182427301 - FRAM SINE Alu -18 158 44 183 352 148 0 chr6 6852259 6852401 -182427153 + L2 LINE L2 3027 3189 -83 2008 170 0 0 chr6 6852679 6852991 -182426563 + AluSx SINE Alu 1 312 0 563 309 65 40 chr6 6853346 6853776 -182425778 + L1ME LINE L1 5276 5716 -405 979 270 93 0 chr6 6854259 6854537 -182425017 - MER115 DNA AcHobo -385 308 5 1911 107 0 84 chr6 6854649 6855004 -182424550 - AluSx SINE Alu 0 329 1 2034 108 25 14 chr6 6855004 6855290 -182424264 - AluSx SINE Alu -23 289 1 21 36 0 0 chr6 6856290 6856318 -182423236 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 6856742 6856765 -182422789 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 523 249 30 75 chr6 6857040 6857241 -182422313 + MER112 DNA MER1_type 52 243 -17 2068 115 20 0 chr6 6857243 6857596 -182421958 - AluSx SINE Alu 0 359 1 271 218 90 13 chr6 6858023 6858101 -182421453 + LTR33A LTR ERVL 440 523 0 1904 129 0 0 chr6 6858391 6858646 -182420908 - AluSx SINE Alu -56 256 2 418 210 25 4 chr6 6859061 6859180 -182420374 + MER5A DNA MER1_type 24 186 -3 272 327 80 43 chr6 6859267 6859429 -182420125 + MIR SINE MIR 19 186 -76 306 328 11 17 chr6 6859634 6859808 -182419746 + A-rich Low_complexity Low_complexity 3 175 0 299 210 0 12 chr6 6860341 6860422 -182419132 + GA-rich Low_complexity Low_complexity 4 83 0 951 143 0 0 chr6 6862139 6862272 -182417282 - FLAM_C SINE Alu 0 133 1 6268 155 55 89 chr6 6862527 6864158 -182415396 - L1MC3 LINE L1 0 7785 6211 276 186 43 0 chr6 6864271 6864341 -182415213 + CT-rich Low_complexity Low_complexity 1 73 0 711 112 0 0 chr6 6864343 6864450 -182415104 + (TTCC)n Simple_repeat Simple_repeat 1 107 0 495 208 0 10 chr6 6865000 6865101 -182414453 - MER45A DNA AcHobo 0 178 79 300 273 0 0 chr6 6865321 6865387 -182414167 - L2 LINE L2 -2 3270 3205 277 218 24 48 chr6 6865562 6865686 -182413868 - LTR67 LTR ERVL -11 546 426 274 156 31 0 chr6 6865982 6866046 -182413508 + (TA)n Simple_repeat Simple_repeat 1 66 0 816 311 86 6 chr6 6866124 6866462 -182413092 + LTR16C LTR ERVL 125 489 -2 275 187 36 14 chr6 6866663 6866802 -182412752 + GA-rich Low_complexity Low_complexity 1 142 0 2339 98 3 0 chr6 6867778 6868074 -182411480 - AluSx SINE Alu -15 297 1 810 236 132 0 chr6 6869240 6869452 -182410102 + MIR SINE MIR 13 252 -10 404 367 67 11 chr6 6869452 6869722 -182409832 + L2 LINE L2 2365 2649 -665 573 320 13 53 chr6 6869768 6869821 -182409733 - MIR SINE MIR -1 261 207 2215 107 0 10 chr6 6869821 6870120 -182409434 + AluSg SINE Alu 1 296 -14 573 320 13 53 chr6 6870120 6870291 -182409263 - MIR SINE MIR -55 207 46 2001 170 0 0 chr6 6870433 6870745 -182408809 - AluJb SINE Alu 0 312 1 268 287 96 44 chr6 6870756 6870892 -182408662 + Charlie7 DNA MER1_type 142 284 -2328 276 100 0 0 chr6 6870984 6871024 -182408530 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 1290 224 110 107 chr6 6871051 6871932 -182407622 + Charlie7 DNA MER1_type 1485 2371 -241 2473 68 3 0 chr6 6871932 6872225 -182407329 - AluY SINE Alu -17 294 1 1290 224 110 107 chr6 6872225 6872332 -182407222 + Charlie7 DNA MER1_type 2371 2476 -136 21 36 0 0 chr6 6872429 6872457 -182407097 + AT_rich Low_complexity Low_complexity 1 28 0 1998 155 0 10 chr6 6872697 6873006 -182406548 - AluSx SINE Alu -6 306 1 1049 153 5 37 chr6 6873008 6873198 -182406356 - L1PA15 LINE L1 0 6165 5982 240 111 0 0 chr6 6873198 6873234 -182406320 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 2077 104 17 0 chr6 6873234 6873523 -182406031 - AluY SINE Alu -1 310 17 1922 150 0 0 chr6 6873523 6873801 -182405753 - AluJb SINE Alu -32 280 1 211 277 31 0 chr6 6873962 6874027 -182405527 + CT-rich Low_complexity Low_complexity 1 67 0 416 224 51 10 chr6 6876222 6876320 -182403234 + MIR SINE MIR 87 188 -74 786 183 0 0 chr6 6876494 6876620 -182402934 + FLAM_C SINE Alu 1 126 -17 364 214 10 10 chr6 6876673 6876776 -182402778 + GA-rich Low_complexity Low_complexity 1 103 0 220 39 0 0 chr6 6876781 6876807 -182402747 + (GA)n Simple_repeat Simple_repeat 2 27 0 355 302 24 48 chr6 6878126 6878252 -182401302 + MIR3 SINE MIR 63 185 -23 345 24 0 0 chr6 6879243 6879285 -182400269 + (A)n Simple_repeat Simple_repeat 1 42 0 356 246 6 0 chr6 6879550 6879725 -182399829 + CT-rich Low_complexity Low_complexity 2 177 0 405 0 0 0 chr6 6879727 6879772 -182399782 + (CA)n Simple_repeat Simple_repeat 1 45 0 220 319 56 0 chr6 6880149 6880221 -182399333 - MIR SINE MIR -68 140 65 2359 112 0 0 chr6 6880344 6880647 -182398907 - AluSx SINE Alu -9 303 1 427 255 134 13 chr6 6882495 6882644 -182396910 - MIR SINE MIR -76 186 20 224 203 8 98 chr6 6883636 6883769 -182395785 + CT-rich Low_complexity Low_complexity 1 121 0 326 288 102 0 chr6 6883901 6884019 -182395535 + MLT1J LTR MaLR 67 196 -315 370 185 12 0 chr6 6884041 6884122 -182395432 - FRAM/FAM SINE Alu -93 82 1 412 313 0 8 chr6 6884125 6884253 -182395301 + MLT1J LTR MaLR 184 310 -201 296 269 40 54 chr6 6884980 6885129 -182394425 + LTR16C LTR ERVL 345 491 0 510 243 40 28 chr6 6885129 6885306 -182394248 + MLT1J LTR MaLR 311 489 -22 2033 116 42 0 chr6 6885331 6885616 -182393938 + AluSx SINE Alu 1 297 -15 395 289 159 32 chr6 6885968 6886245 -182393309 + MLT1I LTR MaLR 22 333 -76 1088 141 0 0 chr6 6887808 6887964 -182391590 - FRAM SINE Alu -12 164 9 251 250 31 73 chr6 6888172 6888268 -182391286 + MIR3 SINE MIR 108 199 -9 500 259 61 33 chr6 6888654 6888820 -182390734 + L1MB8 LINE L1 5944 6119 -59 2073 135 0 22 chr6 6888820 6889132 -182390422 - AluSx SINE Alu -7 305 1 500 259 61 33 chr6 6889132 6889177 -182390377 + L1MB8 LINE L1 6119 6161 -17 677 313 25 10 chr6 6889751 6889952 -182389602 + MIR SINE MIR 51 254 -8 216 97 0 0 chr6 6890825 6890856 -182388698 + (GGA)n Simple_repeat Simple_repeat 2 32 0 628 218 14 49 chr6 6891568 6891710 -182387844 - FLAM_A SINE Alu 0 142 6 281 254 203 17 chr6 6891876 6891994 -182387560 + MIR SINE MIR 106 245 -17 256 284 165 31 chr6 6891991 6892118 -182387436 - MIR3 SINE MIR -35 173 30 * 2063 74 67 7 chr6 6892132 6892470 -182387084 - AluY SINE Alu 0 354 1 1287 55 0 0 chr6 6892470 6892615 -182386939 - AluSq/x SINE Alu -167 145 1 341 88 35 0 chr6 6893182 6893239 -182386315 + CT-rich Low_complexity Low_complexity 1 59 0 320 307 79 18 chr6 6893246 6893360 -182386194 - L2 LINE L2 0 3313 3193 330 177 21 115 chr6 6894439 6894498 -182385056 - MER103 DNA DNA -77 89 41 1663 166 10 40 chr6 6894498 6894799 -182384755 - AluJo SINE Alu -20 292 1 330 177 21 115 chr6 6894799 6894835 -182384719 - MER103 DNA DNA -125 41 3 213 211 0 0 chr6 6894919 6894957 -182384597 + (CA)n Simple_repeat Simple_repeat 2 39 0 1073 248 56 12 chr6 6895432 6895751 -182383803 - MER46C DNA MER2_type 0 338 6 2363 89 0 16 chr6 6896170 6896484 -182383070 - AluY SINE Alu -2 309 1 2213 109 23 0 chr6 6896988 6897191 -182382363 - AluSg SINE Alu 0 329 115 243 0 0 0 chr6 6897191 6897218 -182382336 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2213 109 23 0 chr6 6897218 6897336 -182382218 - AluSg SINE Alu -214 115 1 267 102 61 20 chr6 6898089 6898138 -182381416 + MIR SINE MIR 199 249 -13 2346 90 3 22 chr6 6898304 6898615 -182380939 + AluSp SINE Alu 1 305 -8 1318 213 117 47 chr6 6898621 6898830 -182380724 + L1MD2 LINE L1 5914 6107 -252 180 0 0 0 chr6 6898830 6898850 -182380704 + (CA)n Simple_repeat Simple_repeat 1 20 0 1318 213 117 47 chr6 6898850 6899043 -182380511 + L1MD2 LINE L1 6107 6344 -15 320 310 60 10 chr6 6899206 6899306 -182380248 - MER91C DNA MER1_type -35 105 1 2170 116 0 0 chr6 6901939 6902246 -182377308 - AluSq SINE Alu 0 307 1 266 226 200 43 chr6 6903109 6903224 -182376330 + MIR SINE MIR 124 256 -6 236 318 79 16 chr6 6903325 6903451 -182376103 - MARNA DNA Mariner -380 206 73 2266 69 0 34 chr6 6903739 6904064 -182375490 + AluY SINE Alu 3 317 0 2201 137 0 0 chr6 6904231 6904538 -182375016 - AluSx SINE Alu -5 307 1 599 308 67 5 chr6 6904540 6904748 -182374806 - MIR SINE MIR -36 226 6 2463 149 38 33 chr6 6904909 6905333 -182374221 + MSTB LTR MaLR 1 426 0 2357 143 30 40 chr6 6906643 6906975 -182372579 - MSTC LTR MaLR -1 427 98 2582 63 0 0 chr6 6906975 6907277 -182372277 - AluY SINE Alu -9 302 1 2357 143 30 40 chr6 6907277 6907372 -182372182 - MSTC LTR MaLR -330 98 4 584 266 104 57 chr6 6908996 6909399 -182370155 - LTR16A LTR ERVL -7 443 22 358 218 89 65 chr6 6909537 6909638 -182369916 + L2 LINE L2 3186 3292 -21 2263 73 0 13 chr6 6909638 6909938 -182369616 - AluY SINE Alu -15 296 1 358 218 89 65 chr6 6909938 6909960 -182369594 + L2 LINE L2 3292 3312 -1 204 315 79 47 chr6 6910135 6910262 -182369292 + MIR3 SINE MIR 73 203 -5 2175 81 3 0 chr6 6910578 6910883 -182368671 + AluSp SINE Alu 1 306 0 194 314 0 0 chr6 6910898 6910949 -182368605 + L2 LINE L2 3213 3263 -9 362 301 90 8 chr6 6911282 6911415 -182368139 - MIR SINE MIR -118 144 1 619 219 89 89 chr6 6911545 6911860 -182367694 - MER102a DNA MER1_type -15 315 1 692 224 5 57 chr6 6912021 6912231 -182367323 - HAL1 LINE L1 -119 2388 2190 1893 204 9 61 chr6 6912274 6912734 -182366820 - MER41B LTR ERV1 -38 597 162 1739 258 108 14 chr6 6912795 6913435 -182366119 - HAL1 LINE L1 -304 2203 1504 7554 26 1 1 chr6 6913442 6914728 -182364826 + L1PA4 LINE L1 4882 6167 0 681 129 9 35 chr6 6915281 6915397 -182364157 + AluSq/x SINE Alu 23 135 -177 225 229 17 68 chr6 6915400 6915518 -182364036 - L1MC5 LINE L1 -247 7714 7603 380 279 27 20 chr6 6915740 6915887 -182363667 - L1MC5 LINE L1 -522 7439 7292 * 459 330 58 10 chr6 6915855 6916149 -182363405 - L1MC4a LINE L1 -393 7415 7108 379 83 0 0 chr6 6916850 6916910 -182362644 - L1PA7 LINE L1 -2 6152 6093 1963 108 0 0 chr6 6916991 6917259 -182362295 - AluSx SINE Alu -44 268 1 27 0 0 0 chr6 6917925 6917952 -182361602 + AT_rich Low_complexity Low_complexity 1 27 0 585 67 13 0 chr6 6918567 6918642 -182360912 + AluSq/x SINE Alu 64 139 -173 1676 100 4 0 chr6 6918642 6918872 -182360682 + AluSp SINE Alu 68 298 -15 497 292 152 0 chr6 6918976 6919147 -182360407 + MIR SINE MIR 29 225 -37 23 54 0 0 chr6 6919306 6919343 -182360211 + AT_rich Low_complexity Low_complexity 1 37 0 207 111 0 28 chr6 6919424 6919460 -182360094 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 185 35 69 0 chr6 6920532 6920561 -182358993 + T-rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr6 6920581 6920604 -182358950 + (TA)n Simple_repeat Simple_repeat 1 23 0 551 235 190 6 chr6 6920605 6920784 -182358770 + MER112 DNA MER1_type 49 260 0 1894 131 36 162 chr6 6920908 6920965 -182358589 - MER31B LTR ERV1 -7 459 396 764 168 0 15 chr6 6920965 6921096 -182358458 + FLAM_C SINE Alu 2 130 -3 1894 131 36 162 chr6 6921096 6921563 -182357991 - MER31B LTR ERV1 -70 396 1 2004 271 99 74 chr6 6921738 6921773 -182357781 + HAL1 LINE L1 116 149 -2358 261 0 0 0 chr6 6921773 6921802 -182357752 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2004 271 99 74 chr6 6921802 6923448 -182356106 + HAL1 LINE L1 149 1839 -668 2438 66 3 0 chr6 6923590 6923893 -182355661 - AluSp SINE Alu -9 304 1 454 235 63 75 chr6 6924378 6924646 -182354908 + HAL1 LINE L1 1974 2238 -269 819 251 215 36 chr6 6924667 6925053 -182354501 - LTR33 LTR ERVL -64 457 3 286 240 62 54 chr6 6925158 6925287 -182354267 + HAL1 LINE L1 2375 2504 -3 238 25 25 25 chr6 6925313 6925353 -182354201 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 387 286 182 0 chr6 6925403 6925557 -182353997 + MIR SINE MIR 37 218 -44 263 282 24 47 chr6 6925656 6925741 -182353813 + L2 LINE L2 3184 3266 -6 273 321 0 0 chr6 6926672 6926753 -182352801 + MLT1L LTR MaLR 412 492 -123 24 32 0 0 chr6 6926940 6926971 -182352583 + AT_rich Low_complexity Low_complexity 1 31 0 811 165 0 0 chr6 6926971 6927092 -182352462 - FLAM_A SINE Alu -12 121 1 347 328 16 8 chr6 6927660 6927788 -182351766 - MER5A DNA MER1_type -5 184 56 312 233 42 42 chr6 6927684 6927804 -182351750 + MER5A DNA MER1_type 41 160 -29 * 1747 158 0 10 chr6 6927891 6928188 -182351366 - AluJb SINE Alu -1 311 18 353 164 14 0 chr6 6929550 6929623 -182349931 + GA-rich Low_complexity Low_complexity 3 76 0 287 250 10 87 chr6 6930038 6930095 -182349459 + MER21B LTR ERV1 12 59 -804 228 35 0 0 chr6 6930095 6930124 -182349430 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 287 250 10 87 chr6 6930124 6930170 -182349384 + MER21B LTR ERV1 59 107 -756 2671 229 116 31 chr6 6930170 6930936 -182348618 + MER21B LTR ERV1 22 852 -11 883 177 58 22 chr6 6931059 6931285 -182348269 + MER33 DNA MER1_type 9 242 -82 2623 138 52 54 chr6 6931301 6931320 -182348234 - L1MB3 LINE L1 -17 6166 6148 2122 106 0 0 chr6 6931320 6931613 -182347941 - AluSg SINE Alu -17 293 1 2623 138 52 54 chr6 6931613 6932074 -182347480 - L1MB3 LINE L1 -35 6148 5617 2167 110 3 0 chr6 6932074 6932383 -182347171 - AluSg SINE Alu 0 310 1 2623 138 52 54 chr6 6932383 6932654 -182346900 - L1MB3 LINE L1 -566 5617 5347 573 106 0 43 chr6 6932655 6932749 -182346805 + MER33 DNA MER1_type 273 362 -1 2119 110 3 3 chr6 6933171 6933471 -182346083 + AluSq SINE Alu 1 300 -13 2070 119 10 3 chr6 6933920 6934231 -182345323 - AluSq SINE Alu 0 313 1 2187 105 0 3 chr6 6934501 6934814 -182344740 + AluSx SINE Alu 1 312 0 218 300 27 55 chr6 6934976 6935086 -182344468 + MIR SINE MIR 98 204 -58 1617 163 7 14 chr6 6935351 6935646 -182343908 + AluJo SINE Alu 1 293 -19 297 206 98 10 chr6 6936972 6937074 -182342480 + MER53 DNA DNA 10 120 -69 4672 158 144 31 chr6 6938656 6940063 -182339491 - pTR5 LTR ERV1 0 2438 742 316 273 120 13 chr6 6940324 6940474 -182339080 - L2 LINE L2 -328 2985 2820 2096 269 106 55 chr6 6940484 6940773 -182338781 - L2 LINE L2 -650 2664 2391 2042 63 0 0 chr6 6940773 6941025 -182338529 - L1PA6 LINE L1 -4 6150 5899 2096 269 106 55 chr6 6941025 6941298 -182338256 - L2 LINE L2 -923 2391 2133 1272 230 26 10 chr6 6941298 6941602 -182337952 + AluJb SINE Alu 4 312 0 2096 269 106 55 chr6 6941602 6941761 -182337793 - L2 LINE L2 -1181 2133 1984 2066 140 110 8 chr6 6941761 6942153 -182337401 + MSTB1 LTR MaLR 1 432 0 2096 269 106 55 chr6 6942153 6942633 -182336921 - L2 LINE L2 -1330 1984 1400 1401 155 83 31 chr6 6942649 6942939 -182336615 + MSTB LTR MaLR 1 305 -121 250 91 0 0 chr6 6942948 6942981 -182336573 - MER58 DNA MER1_type -2216 204 172 662 78 12 18 chr6 6942982 6943237 -182336317 + AluSg SINE Alu 1 308 -4 717 204 117 0 chr6 6943237 6943399 -182336155 - MER58 DNA MER1_type -2239 181 1 31 20 0 20 chr6 6944170 6944199 -182335355 + AT_rich Low_complexity Low_complexity 1 30 -18 1915 103 13 43 chr6 6944199 6944499 -182335055 - AluSx SINE Alu -21 291 1 31 20 0 20 chr6 6944499 6944518 -182335036 + AT_rich Low_complexity Low_complexity 30 48 0 537 168 9 62 chr6 6944596 6944709 -182334845 - MSTA LTR MaLR -321 107 1 2067 109 3 7 chr6 6944813 6945115 -182334439 - AluSx SINE Alu -11 301 1 509 279 90 31 chr6 6945265 6945487 -182334067 + MIR SINE MIR 20 254 -8 240 214 0 0 chr6 6945562 6945604 -182333950 + L2 LINE L2 3258 3299 -14 2073 97 30 3 chr6 6945916 6946214 -182333340 + AluSc SINE Alu 1 306 -3 189 0 0 0 chr6 6946967 6946988 -182332566 + (TG)n Simple_repeat Simple_repeat 2 22 0 2832 168 10 27 chr6 6947305 6947852 -182331702 + L1MB3 LINE L1 5633 6160 -15 2122 117 0 0 chr6 6947968 6948268 -182331286 + AluSx SINE Alu 1 300 -12 421 149 11 11 chr6 6948268 6948355 -182331199 + GA-rich Low_complexity Low_complexity 1 87 0 211 277 31 0 chr6 6999605 6999670 -182279884 + GA-rich Low_complexity Low_complexity 1 67 0 1776 154 0 0 chr6 6999831 7000111 -182279443 + AluJb SINE Alu 1 280 -32 1941 104 17 0 chr6 7000111 7000398 -182279156 + AluY SINE Alu 17 310 -1 240 111 0 0 chr6 7000398 7000434 -182279120 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 1043 153 5 37 chr6 7000434 7000624 -182278930 + L1PA15 LINE L1 5982 6165 0 1821 160 0 10 chr6 7000626 7000933 -182278621 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr6 7001173 7001201 -182278353 + AT_rich Low_complexity Low_complexity 1 28 0 1486 218 113 109 chr6 7001309 7001405 -182278149 - Charlie7 DNA MER1_type -147 2465 2371 2331 68 3 0 chr6 7001405 7001698 -182277856 + AluY SINE Alu 1 294 -17 1486 218 113 109 chr6 7001698 7002579 -182276975 - Charlie7 DNA MER1_type -241 2371 1485 242 246 0 0 chr6 7002603 7002660 -182276894 + L1MC4 LINE L1 6649 6705 -1337 302 287 96 44 chr6 7002738 7002874 -182276680 - Charlie7 DNA MER1_type -2328 284 142 1844 170 0 0 chr6 7002885 7003197 -182276357 + AluJb SINE Alu 1 312 0 577 320 13 53 chr6 7003339 7003510 -182276044 + MIR SINE MIR 46 207 -55 2075 104 0 10 chr6 7003510 7003808 -182275746 - AluSg SINE Alu -15 295 1 577 320 13 53 chr6 7003808 7003861 -182275693 + MIR SINE MIR 207 261 -1 399 367 67 11 chr6 7003907 7004177 -182275377 - L2 LINE L2 -665 2649 2365 817 236 132 0 chr6 7004177 7004389 -182275165 - MIR SINE MIR -10 252 13 2201 98 3 0 chr6 7005555 7005852 -182273702 + AluSx SINE Alu 1 298 -14 293 184 35 14 chr6 7006828 7006969 -182272585 + CT-rich Low_complexity Low_complexity 1 144 0 901 311 86 6 chr6 7007170 7007508 -182272046 - LTR16C LTR ERVL -2 489 125 274 156 31 0 chr6 7007586 7007650 -182271904 + (TA)n Simple_repeat Simple_repeat 1 66 0 305 218 24 48 chr6 7007946 7008070 -182271484 + LTR67 LTR ERVL 426 546 -11 298 273 0 0 chr6 7008245 7008311 -182271243 + L2 LINE L2 3205 3270 -2 525 208 0 10 chr6 7008531 7008632 -182270922 + MER45A DNA AcHobo 79 178 0 744 86 0 0 chr6 7009182 7009287 -182270267 + (GGAA)n Simple_repeat Simple_repeat 1 105 0 372 77 0 0 chr6 7009387 7009439 -182270115 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 360 242 17 22 chr6 7009396 7009574 -182269980 + GA-rich Low_complexity Low_complexity 4 180 0 * 21 36 0 0 chr6 7010424 7010452 -182269102 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 7010876 7010899 -182268655 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 531 244 30 75 chr6 7011174 7011375 -182268179 + MER112 DNA MER1_type 52 243 -17 1938 118 20 0 chr6 7011377 7011730 -182267824 - AluSx SINE Alu 0 359 1 272 218 90 13 chr6 7012157 7012235 -182267319 + LTR33A LTR ERVL 440 523 0 1779 129 0 0 chr6 7012525 7012780 -182266774 - AluSx SINE Alu -56 256 2 409 210 25 4 chr6 7013195 7013314 -182266240 + MER5A DNA MER1_type 24 186 -3 270 327 80 43 chr6 7013401 7013563 -182265991 + MIR SINE MIR 19 186 -76 306 328 11 17 chr6 7013768 7013942 -182265612 + A-rich Low_complexity Low_complexity 3 175 0 299 210 0 12 chr6 7014475 7014556 -182264998 + GA-rich Low_complexity Low_complexity 4 83 0 933 143 0 0 chr6 7016272 7016405 -182263149 - FLAM_C SINE Alu 0 133 1 7183 159 88 104 chr6 7016660 7017259 -182262295 - L1MC3 LINE L1 0 7785 7177 234 266 0 16 chr6 7017259 7017323 -182262231 - MLT1F1 LTR MaLR -460 107 45 7183 159 88 104 chr6 7017323 7018664 -182260890 - L1MC3 LINE L1 -608 7177 5810 465 285 201 11 chr6 7018737 7019000 -182260554 + L2 LINE L2 3001 3313 0 1851 119 25 14 chr6 7019270 7019556 -182259998 + AluSx SINE Alu 1 289 -23 1851 105 0 66 chr6 7019556 7019905 -182259649 + AluSx SINE Alu 1 329 0 1081 273 133 8 chr6 7020017 7020401 -182259153 + MER115 DNA AcHobo 5 436 -257 583 305 65 40 chr6 7020787 7021217 -182258337 - L1MC3 LINE L1 -405 5716 5276 1892 167 0 0 chr6 7021577 7021889 -182257665 - AluSx SINE Alu 0 312 1 226 361 139 5 chr6 7022093 7022309 -182257245 - L2 LINE L2 -1 3271 3027 636 177 18 0 chr6 7022315 7022428 -182257126 + FRAM SINE Alu 44 158 -18 1500 105 5 0 chr6 7022447 7022657 -182256897 - AluSg/x SINE Alu -17 293 83 187 86 57 29 chr6 7022969 7023004 -182256550 - MER5A DNA MER1_type -26 163 128 2209 90 0 3 chr6 7023007 7023308 -182256246 + AluSc SINE Alu 1 300 -9 610 281 77 108 chr6 7023617 7024009 -182255545 + MLT1K LTR MaLR 134 510 -78 657 178 31 8 chr6 7024009 7024138 -182255416 - FLAM_C SINE Alu 0 133 2 610 281 77 108 chr6 7024138 7024215 -182255339 + MLT1K LTR MaLR 510 588 0 1276 203 8 4 chr6 7025205 7025442 -182254112 + MER8 DNA MER2_type 2 239 0 822 201 12 6 chr6 7025442 7025606 -182253948 + MER58B DNA MER1_type 177 341 0 461 201 21 111 chr6 7025811 7025913 -182253641 - L2 LINE L2 -1 3312 3225 2081 133 0 13 chr6 7025913 7026230 -182253324 + AluSq SINE Alu 1 313 0 461 201 21 111 chr6 7026230 7026271 -182253283 - L2 LINE L2 -88 3225 3182 240 200 71 14 chr6 7026307 7026377 -182253177 - MIR SINE MIR -97 111 38 1952 105 10 10 chr6 7027227 7027521 -182252033 + AluSx SINE Alu 1 294 -18 715 250 71 95 chr6 7027819 7028038 -182251516 - L2 LINE L2 0 3313 3090 667 144 127 0 chr6 7028038 7028156 -182251398 + AluJo SINE Alu 1 133 -169 715 250 71 95 chr6 7028156 7028169 -182251385 - L2 LINE L2 -223 3090 3078 2259 105 0 6 chr6 7028169 7028483 -182251071 + AluSx SINE Alu 1 312 0 1245 202 73 35 chr6 7028487 7028774 -182250780 + AluJb SINE Alu 2 299 -3 715 250 71 95 chr6 7028774 7029031 -182250523 - L2 LINE L2 -238 3075 2830 262 278 56 0 chr6 7029227 7029317 -182250237 + L2 LINE L2 3217 3311 -2 224 279 63 0 chr6 7029977 7030056 -182249498 - MER5A DNA MER1_type -73 116 33 676 239 117 5 chr6 7030137 7030334 -182249220 - MIR SINE MIR -26 236 18 197 203 102 34 chr6 7031704 7031763 -182247791 - MIR3 SINE MIR -133 75 13 1315 215 39 16 chr6 7032058 7032370 -182247184 - MER33 DNA MER1_type 0 324 6 296 100 0 20 chr6 7032512 7032562 -182246992 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 978 134 0 0 chr6 7032644 7032793 -182246761 + AluJo SINE Alu 134 282 -30 21 0 0 0 chr6 7032793 7032814 -182246740 + AT_rich Low_complexity Low_complexity 1 21 0 2082 119 3 0 chr6 7032985 7033288 -182246266 + AluSq SINE Alu 1 304 -9 243 88 0 0 chr6 7033786 7033820 -182245734 + (T)n Simple_repeat Simple_repeat 1 34 0 198 0 0 0 chr6 7034098 7034120 -182245434 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 209 156 0 0 chr6 7034550 7034582 -182244972 + MIR SINE MIR 114 145 -63 968 227 158 27 chr6 7034614 7035020 -182244534 - LTR16B LTR ERVL -4 460 2 2285 148 16 3 chr6 7035038 7035423 -182244131 - MLT1B LTR MaLR 0 390 1 348 331 39 6 chr6 7035505 7035683 -182243871 - HERV16 LTR ERVL -361 5403 5220 268 265 116 48 chr6 7036059 7036206 -182243348 - HERV16 LTR ERVL -4435 561 405 213 265 229 0 chr6 7036489 7036572 -182242982 + MIR SINE MIR 101 202 -60 1684 212 8 33 chr6 7036578 7036941 -182242613 + MLT1A1 LTR MaLR 1 354 -11 481 340 71 30 chr6 7036984 7037281 -182242273 + L1MC4a LINE L1 4619 4927 -1219 376 233 0 23 chr6 7037348 7037434 -182242120 - MER96 DNA MER1_type? -1 174 91 292 305 130 7 chr6 7037513 7037667 -182241887 + L1MC4a LINE L1 5729 5901 -1907 2346 58 0 0 chr6 7038384 7038675 -182240879 - AluY SINE Alu -14 297 7 27 0 0 0 chr6 7038724 7038751 -182240803 + AT_rich Low_complexity Low_complexity 1 27 0 2874 150 41 44 chr6 7038753 7039318 -182240236 + L1MB8 LINE L1 5476 6038 -140 1818 188 49 10 chr6 7039319 7039728 -182239826 - L1MC1 LINE L1 0 6333 5909 738 180 20 13 chr6 7039729 7039879 -182239675 + L1MB8 LINE L1 6027 6177 -1 1674 140 0 4 chr6 7040294 7040558 -182238996 - AluJo SINE Alu -9 303 41 611 145 192 87 chr6 7040697 7040869 -182238685 - MER20 DNA MER1_type -1 218 29 225 65 0 0 chr6 7040874 7040905 -182238649 + (TC)n Simple_repeat Simple_repeat 2 32 0 336 326 64 28 chr6 7041320 7041461 -182238093 - MIR SINE MIR -12 250 105 573 157 352 179 chr6 7041475 7041708 -182237846 + MLT1H LTR MaLR 14 206 -343 2293 89 0 0 chr6 7041708 7042012 -182237542 + AluY SINE Alu 1 304 -7 573 157 352 179 chr6 7042012 7042213 -182237341 + MLT1H LTR MaLR 206 549 0 723 207 47 61 chr6 7043002 7043215 -182236339 + MER63A DNA MER1_type 1 210 0 682 313 78 14 chr6 7043242 7043526 -182236028 - MLT1J LTR MaLR 0 511 210 931 135 0 59 chr6 7043573 7043743 -182235811 - AluJo SINE Alu -17 295 136 264 279 171 16 chr6 7043806 7043935 -182235619 - MLT1J LTR MaLR -362 149 1 304 261 52 0 chr6 7044181 7044296 -182235258 - MER113 DNA MER1_type? -399 122 2 294 203 0 16 chr6 7044313 7044377 -182235177 - MIR SINE MIR -61 147 85 1789 133 11 11 chr6 7044425 7044710 -182234844 + AluJb SINE Alu 1 285 -27 217 369 67 34 chr6 7045445 7045624 -182233930 + L3b LINE CR1 1372 1556 -27 928 249 39 35 chr6 7046554 7046811 -182232743 - MLT1J LTR MaLR 0 511 254 894 250 169 43 chr6 7046815 7047299 -182232255 + MLT1H LTR MaLR 1 545 -4 2257 90 3 0 chr6 7047603 7047939 -182231615 + AluSx SINE Alu 1 337 0 27 48 0 32 chr6 7047957 7047981 -182231573 + AT_rich Low_complexity Low_complexity 1 24 -37 760 171 0 23 chr6 7047981 7048110 -182231444 - AluJo SINE Alu -176 126 1 27 48 0 32 chr6 7048110 7048148 -182231406 + AT_rich Low_complexity Low_complexity 24 61 0 363 347 70 14 chr6 7048359 7048572 -182230982 + L3b LINE CR1 1351 1575 -8 300 255 39 20 chr6 7048609 7048711 -182230843 - L2 LINE L2 -32 3281 3178 593 165 122 17 chr6 7048845 7048960 -182230594 + FLAM_C SINE Alu 1 127 -6 1540 248 118 83 chr6 7049110 7049552 -182230002 + Charlie2a DNA MER1_type 36 461 -2401 237 83 0 0 chr6 7049552 7049588 -182229966 + (TG)n Simple_repeat Simple_repeat 1 36 0 1540 248 118 83 chr6 7049588 7049931 -182229623 + Charlie2a DNA MER1_type 461 791 -2071 6530 42 0 0 chr6 7049931 7050701 -182228853 + L1PA6 LINE L1 5384 6153 -1 1540 248 118 83 chr6 7050701 7050775 -182228779 + Charlie2a DNA MER1_type 791 861 -2001 1837 102 0 8 chr6 7050775 7051030 -182228524 + AluSx SINE Alu 47 299 -13 1540 248 118 83 chr6 7051030 7051070 -182228484 + Charlie2a DNA MER1_type 861 968 -1894 631 331 35 3 chr6 7051136 7051426 -182228128 - L1MC4a LINE L1 -1878 5930 5632 1998 128 3 0 chr6 7052101 7052391 -182227163 + AluSq SINE Alu 6 296 -17 541 225 0 180 chr6 7052420 7052687 -182226867 - MIR SINE MIR -8 254 36 360 0 0 0 chr6 7052692 7052732 -182226822 + (TG)n Simple_repeat Simple_repeat 2 41 0 1423 259 80 35 chr6 7052750 7052828 -182226726 - MLT1J LTR MaLR -3 508 435 2250 113 0 0 chr6 7052828 7053137 -182226417 + AluSg SINE Alu 1 309 -1 1423 259 80 35 chr6 7053137 7053544 -182226010 - MLT1J LTR MaLR -76 435 1 373 307 246 34 chr6 7053557 7054410 -182225144 - L3 LINE CR1 0 1577 544 400 245 93 29 chr6 7054602 7054741 -182224813 - L2 LINE L2 0 3272 3125 * 594 267 99 29 chr6 7054732 7054966 -182224588 + L2 LINE L2 2682 2898 -415 579 53 0 0 chr6 7054966 7055041 -182224513 + (CATAC)n Simple_repeat Simple_repeat 2 76 0 594 267 99 29 chr6 7055041 7055317 -182224237 + L2 LINE L2 2898 3233 -80 273 119 0 0 chr6 7055374 7055416 -182224138 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 295 275 161 34 chr6 7055443 7055592 -182223962 - L2 LINE L2 -176 3096 2929 302 401 70 13 chr6 7055692 7055905 -182223649 - L2 LINE L2 -508 2806 2606 580 274 60 19 chr6 7055905 7055996 -182223558 - MER58A DNA MER1_type -2196 224 138 1916 146 3 3 chr6 7055996 7056304 -182223250 + AluJo SINE Alu 1 308 -4 1686 145 10 27 chr6 7056313 7056610 -182222944 + AluJb SINE Alu 1 292 -20 580 274 60 19 chr6 7056610 7056723 -182222831 - MER58A DNA MER1_type -2289 131 1 302 401 70 13 chr6 7056723 7056811 -182222743 - L2 LINE L2 -708 2606 2488 187 123 26 61 chr6 7057643 7057676 -182221878 + A-rich Low_complexity Low_complexity 2 35 -76 846 141 0 0 chr6 7057676 7057797 -182221757 + FLAM_C SINE Alu 1 121 -12 187 123 26 61 chr6 7057797 7057877 -182221677 + A-rich Low_complexity Low_complexity 35 111 0 2210 97 0 7 chr6 7060433 7060741 -182218813 + AluY SINE Alu 1 306 -5 2085 101 0 33 chr6 7060745 7061051 -182218503 + AluSg SINE Alu 1 296 -14 1652 180 20 3 chr6 7061057 7061357 -182218197 + L1MB3 LINE L1 5815 6119 -64 733 184 73 0 chr6 7061362 7061498 -182218056 + AluJb SINE Alu 150 295 -17 317 150 0 150 chr6 7061498 7061542 -182218012 + L1MB2 LINE L1 6097 6125 -46 2183 75 27 10 chr6 7061542 7061836 -182217718 - AluSx SINE Alu -13 299 1 317 150 0 150 chr6 7061836 7061871 -182217683 + L1MB2 LINE L1 6125 6164 -7 354 301 199 5 chr6 7062258 7062444 -182217110 + MIR SINE MIR 4 225 -37 671 288 142 34 chr6 7062770 7063207 -182216347 - LTR33A LTR ERVL -16 507 24 185 235 98 0 chr6 7063935 7063986 -182215568 - MIR SINE MIR -97 165 110 209 351 0 14 chr6 7064152 7064226 -182215328 + GA-rich Low_complexity Low_complexity 2 74 0 219 232 104 48 chr6 7065817 7065942 -182213612 + MIR SINE MIR 17 148 -60 310 255 106 0 chr6 7066178 7066272 -182213282 + MER5A DNA MER1_type 2 105 -84 875 206 33 0 chr6 7066341 7066521 -182213033 - MER5A DNA MER1_type -3 186 1 2038 123 3 0 chr6 7066824 7067126 -182212428 - AluSx SINE Alu -9 303 1 1867 148 0 3 chr6 7067301 7067599 -182211955 + AluJb SINE Alu 1 297 -15 1314 192 16 4 chr6 7067893 7068167 -182211387 + AluJo SINE Alu 30 306 0 356 277 0 27 chr6 7068220 7068332 -182211222 - L1ME LINE L1 -307 5814 5706 1916 82 4 0 chr6 7068428 7068684 -182210870 + L1PA14 LINE L1 5728 5984 -177 1133 162 5 0 chr6 7068784 7068988 -182210566 + L1PA14 LINE L1 5955 6159 -2 261 302 84 20 chr6 7069025 7069227 -182210327 - L1ME LINE L1 -659 5511 5297 2237 185 49 29 chr6 7069730 7070221 -182209333 + LTR40a LTR ERVL 19 519 0 404 271 235 28 chr6 7070400 7070651 -182208903 + L3 LINE CR1 1252 1554 -23 2031 88 32 0 chr6 7071020 7071305 -182208249 - AluSp SINE Alu -19 294 1 440 213 11 11 chr6 7071698 7071792 -182207762 + MIR SINE MIR 46 139 -69 1982 133 0 0 chr6 7071842 7072142 -182207412 + AluSg SINE Alu 1 300 -10 252 0 0 0 chr6 7072143 7072171 -182207383 + (TA)n Simple_repeat Simple_repeat 2 29 0 1767 156 32 0 chr6 7072172 7072454 -182207100 + AluJb SINE Alu 1 291 -21 990 184 36 31 chr6 7072459 7072682 -182206872 + L1MC1 LINE L1 6107 6330 -3 222 333 90 42 chr6 7073997 7074186 -182205368 - L2 LINE L2 -2 3270 3073 729 142 24 39 chr6 7074531 7074658 -182204896 - FLAM_A SINE Alu -10 132 8 1403 193 11 4 chr6 7074662 7074932 -182204622 - AluJb SINE Alu -40 272 1 185 262 83 48 chr6 7075114 7075198 -182204356 - L2 LINE L2 0 3272 3186 822 104 0 0 chr6 7075489 7075604 -182203950 - AluSg/x SINE Alu -10 302 188 3499 203 31 55 chr6 7075676 7076413 -182203141 - MER45B DNA AcHobo -213 827 112 2020 135 0 0 chr6 7076413 7076709 -182202845 + AluSx SINE Alu 1 296 -16 3499 203 31 55 chr6 7076709 7076819 -182202735 - MER45B DNA AcHobo -928 112 1 187 315 115 105 chr6 7077004 7077309 -182202245 - L2 LINE L2 -5 3267 2960 545 251 87 90 chr6 7077309 7077498 -182202056 - LTR16C LTR ERVL -2 489 300 1664 141 85 0 chr6 7077498 7077768 -182201786 - AluJo SINE Alu -15 297 5 545 251 87 90 chr6 7077768 7077944 -182201610 - LTR16C LTR ERVL -191 300 125 680 232 14 0 chr6 7078115 7078253 -182201301 - MER5A DNA MER1_type 0 189 50 380 286 207 0 chr6 7078603 7078743 -182200811 + LTR33 LTR ERVL 42 210 -311 248 301 82 20 chr6 7078865 7079011 -182200543 + LTR33 LTR ERVL 365 519 -2 191 61 30 0 chr6 7079242 7079275 -182200279 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 573 273 171 6 chr6 7080226 7080402 -182199152 - MIR SINE MIR -16 246 42 624 195 124 12 chr6 7080440 7080609 -182198945 + MER20 DNA MER1_type 32 219 0 1800 124 7 34 chr6 7081096 7081394 -182198160 + AluJb SINE Alu 1 290 -22 197 229 21 104 chr6 7082116 7082212 -182197342 - MER5A DNA MER1_type -93 96 9 2204 101 7 0 chr6 7082939 7083235 -182196319 - AluSx SINE Alu -14 298 1 632 260 13 104 chr6 7083261 7083492 -182196062 - MIR SINE MIR -10 252 43 521 153 0 0 chr6 7084521 7084606 -182194948 - AluJ/FRAM SINE Alu -1 311 227 1267 186 53 4 chr6 7084609 7084835 -182194719 + MLT1A1 LTR MaLR 127 363 -2 310 268 14 0 chr6 7084950 7085021 -182194533 - L2 LINE L2 -4 3309 3238 315 246 144 57 chr6 7085904 7086135 -182193419 - MIR SINE MIR 0 262 4 195 42 0 0 chr6 7086274 7086298 -182193256 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1325 137 121 19 chr6 7086322 7086578 -182192976 - AluJo SINE Alu -30 282 1 837 174 0 0 chr6 7087166 7087375 -182192179 - AluJb SINE Alu 0 342 134 219 271 164 21 chr6 7087680 7087820 -182191734 - MIR SINE MIR -12 250 91 1370 206 44 16 chr6 7087830 7088146 -182191408 - MER58B DNA MER1_type -16 325 1 231 261 14 43 chr6 7088244 7088313 -182191241 - MIR3 SINE MIR -134 74 8 519 66 0 0 chr6 7088906 7088982 -182190572 + (TG)n Simple_repeat Simple_repeat 1 76 0 315 302 56 24 chr6 7089384 7089510 -182190044 + L2 LINE L2 3127 3256 -16 267 236 57 89 chr6 7090099 7090222 -182189332 - L2 LINE L2 -16 3297 3179 180 265 0 41 chr6 7090228 7090277 -182189277 - L2 LINE L2 -3 3310 3264 291 54 0 0 chr6 7092233 7092270 -182187284 + (TG)n Simple_repeat Simple_repeat 1 37 0 1823 192 79 8 chr6 7094790 7095159 -182184395 - MSTD LTR MaLR 0 396 2 265 241 176 0 chr6 7096054 7096162 -182183392 - L2 LINE L2 -645 2669 2543 384 239 127 70 chr6 7096523 7096697 -182182857 + MIR SINE MIR 5 206 -56 2043 118 0 0 chr6 7096697 7096984 -182182570 + AluSx SINE Alu 1 287 -25 384 239 127 70 chr6 7096984 7097045 -182182509 + MIR SINE MIR 206 262 0 21 0 0 0 chr6 7097062 7097083 -182182471 + AT_rich Low_complexity Low_complexity 1 21 0 195 275 132 33 chr6 7098211 7098302 -182181252 + L2 LINE L2 3172 3271 -1 196 75 25 25 chr6 7098333 7098373 -182181181 + (CCCTAA)n Simple_repeat Simple_repeat 1 40 0 232 342 25 0 chr6 7098465 7098544 -182181010 - MIR3 SINE MIR -2 206 126 472 292 30 55 chr6 7099198 7099400 -182180154 - MIR SINE MIR -53 209 13 829 187 18 6 chr6 7099693 7099864 -182179690 + FRAM SINE Alu 2 174 -2 2394 41 3 0 chr6 7101175 7101469 -182178085 - AluY SINE Alu -16 295 1 1583 180 3 10 chr6 7101589 7101900 -182177654 - AluJo SINE Alu -3 309 1 433 327 210 13 chr6 7102030 7102425 -182177129 - L3 LINE CR1 -20 1557 1085 805 216 72 19 chr6 7102439 7102647 -182176907 - MIR SINE MIR -10 252 34 745 237 17 6 chr6 7102663 7102836 -182176718 - MER5B DNA MER1_type -3 175 1 843 130 0 8 chr6 7103513 7103636 -182175918 - FLAM_C SINE Alu -11 122 1 584 120 10 0 chr6 7104814 7104914 -182174640 + (CA)n Simple_repeat Simple_repeat 2 102 0 258 167 0 0 chr6 7104914 7104968 -182174586 - MER4-int LTR ERV1 -5433 1165 1112 301 115 0 0 chr6 7104979 7105031 -182174523 - MER4-int LTR ERV1 -5436 1162 1111 207 162 0 0 chr6 7105032 7105069 -182174485 + (CA)n Simple_repeat Simple_repeat 1 37 0 258 135 39 0 chr6 7105069 7105121 -182174433 - MER4-int LTR ERV1 -5434 1164 1111 779 204 0 6 chr6 7105128 7105309 -182174245 + (CA)n Simple_repeat Simple_repeat 1 180 0 2059 142 0 0 chr6 7106012 7106323 -182173231 - AluSx SINE Alu -1 311 1 1794 168 3 0 chr6 7106856 7107148 -182172406 + AluJo SINE Alu 1 293 -19 362 272 191 0 chr6 7107384 7107531 -182172023 + MER5A DNA MER1_type 9 183 -6 1716 172 26 0 chr6 7107535 7107838 -182171716 + AluJb SINE Alu 1 311 -1 859 146 8 0 chr6 7108095 7108225 -182171329 + FLAM_C SINE Alu 1 131 -2 430 322 64 0 chr6 7108694 7108865 -182170689 + LTR33 LTR ERVL 2 183 -338 246 277 200 0 chr6 7108952 7109107 -182170447 + LTR33 LTR ERVL 327 512 -9 737 192 0 0 chr6 7109159 7109284 -182170270 - FLAM_A SINE Alu -8 125 1 2052 135 7 0 chr6 7109569 7109873 -182169681 - AluSx SINE Alu -6 306 1 2349 73 0 6 chr6 7109883 7110196 -182169358 - AluY SINE Alu 0 311 1 494 258 74 94 chr6 7110273 7110469 -182169085 + L1MB3 LINE L1 4742 4940 -1181 1817 138 0 10 chr6 7110469 7110766 -182168788 + AluSx SINE Alu 1 294 -18 494 258 74 94 chr6 7110766 7111102 -182168452 + L1MB3 LINE L1 4940 5281 -840 1759 154 26 13 chr6 7111102 7111408 -182168146 - 7SLRNA srpRNA srpRNA -6 314 5 494 258 74 94 chr6 7111408 7111583 -182167971 + L1MB3 LINE L1 5281 5458 -663 1575 137 98 0 chr6 7111583 7111839 -182167715 + AluSc SINE Alu 1 305 0 196 42 0 0 chr6 7111839 7111863 -182167691 + (TAAA)n Simple_repeat Simple_repeat 2 152 0 494 258 74 94 chr6 7111863 7111882 -182167672 + L1MB3 LINE L1 5458 5476 -645 2246 55 0 10 chr6 7111882 7112172 -182167382 + AluY SINE Alu 1 287 -24 494 258 74 94 chr6 7112172 7112386 -182167168 + L1MB3 LINE L1 5476 5662 -459 4686 152 29 39 chr6 7112424 7113688 -182165866 + pTR5 LTR ERV1 175 2294 -144 1461 133 27 19 chr6 7113753 7114016 -182165538 + AluSx SINE Alu 10 274 -38 1360 182 16 0 chr6 7114130 7114388 -182165166 - AluJo SINE Alu -50 262 1 284 0 28 0 chr6 7115386 7115422 -182164132 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2083 114 41 0 chr6 7115927 7116310 -182163244 + L1MB3 LINE L1 5658 6182 -1 792 145 8 0 chr6 7116317 7116434 -182163120 + FLAM_C SINE Alu 2 119 -24 2390 60 0 3 chr6 7116507 7116807 -182162747 - AluY SINE Alu -12 299 1 8997 45 9 3 chr6 7116861 7118746 -182160808 - L1PA6 LINE L1 0 6154 4250 36 0 0 0 chr6 7118760 7118796 -182160758 + AT_rich Low_complexity Low_complexity 1 36 0 218 253 121 81 chr6 7119386 7119485 -182160069 + MIR SINE MIR 49 151 -111 449 174 0 0 chr6 7119485 7119554 -182160000 + Tigger2 DNA MER2_type 1 69 -2649 * 2563 149 27 18 chr6 7119544 7119986 -182159568 + Tigger2 DNA MER2_type 2273 2718 0 1606 149 53 4 chr6 7119988 7120151 -182159403 - AluJo SINE Alu -17 295 111 369 0 0 0 chr6 7120151 7120192 -182159362 + (TG)n Simple_repeat Simple_repeat 2 42 0 1606 149 53 4 chr6 7120192 7120309 -182159245 - AluJo SINE Alu -201 111 1 335 60 20 0 chr6 7120350 7120400 -182159154 + (TA)n Simple_repeat Simple_repeat 2 52 0 1714 151 4 0 chr6 7121332 7121603 -182157951 - AluJo SINE Alu -40 272 1 385 256 90 45 chr6 7121615 7121654 -182157900 + MIR SINE MIR 111 147 -115 2238 75 0 0 chr6 7121654 7121956 -182157598 + AluY SINE Alu 3 304 0 385 256 90 45 chr6 7121956 7122048 -182157506 + MIR SINE MIR 147 249 -13 421 273 72 57 chr6 7122097 7122291 -182157263 - MIR SINE MIR 0 262 66 274 258 0 16 chr6 7122502 7122564 -182156990 - L2 LINE L2 -109 3163 3103 1405 148 94 32 chr6 7122645 7122922 -182156632 - AluJb SINE Alu -16 296 3 2186 133 68 0 chr6 7122995 7123378 -182156176 - L1MA9 LINE L1 0 6312 5904 1366 169 110 19 chr6 7123378 7123663 -182155891 + L1 LINE L1 4655 4971 -1175 2288 164 25 70 chr6 7123663 7124146 -182155408 + LOR1b LTR ERV1 1 461 0 1366 169 110 19 chr6 7124146 7124168 -182155386 + L1 LINE L1 4971 4990 -1156 180 0 0 0 chr6 7124331 7124351 -182155203 + (CATAC)n Simple_repeat Simple_repeat 1 20 0 3890 198 259 25 chr6 7124971 7126111 -182153443 + pTR5 LTR ERV1 1033 2438 0 502 277 36 42 chr6 7126114 7126280 -182153274 + MER5A DNA MER1_type 23 187 -2 1561 161 34 38 chr6 7126875 7127000 -182152554 + AluSx SINE Alu 1 125 -187 2103 105 10 10 chr6 7127000 7127306 -182152248 + AluSp SINE Alu 1 306 -7 1561 161 34 38 chr6 7127306 7127472 -182152082 + AluSx SINE Alu 125 291 -21 389 236 264 21 chr6 7127480 7127624 -182151930 + MER5A DNA MER1_type 11 189 0 267 265 174 10 chr6 7127750 7127848 -182151706 + MER5B DNA MER1_type 1 114 -64 1790 116 0 0 chr6 7127856 7128106 -182151448 - AluSx SINE Alu -14 298 49 3739 153 52 31 chr6 7128106 7128875 -182150679 - LTR1 LTR ERV1 0 785 1 382 137 0 7 chr6 7128875 7128944 -182150610 - Alu SINE Alu -249 52 1 241 243 142 95 chr6 7129987 7130056 -182149498 - L2 LINE L2 -2 3270 3206 2128 114 3 0 chr6 7130056 7130354 -182149200 + AluSg SINE Alu 1 299 -11 241 243 142 95 chr6 7130354 7130432 -182149122 - L2 LINE L2 -66 3206 3116 316 341 89 42 chr6 7130676 7130890 -182148664 - L1ME LINE L1 -516 5605 5382 209 314 43 0 chr6 7131586 7131656 -182147898 + MIR SINE MIR 58 130 -78 565 286 177 16 chr6 7131659 7131907 -182147647 - LTR16A LTR ERVL 0 450 163 369 289 70 16 chr6 7131972 7132100 -182147454 + MIR SINE MIR 128 262 0 241 250 0 33 chr6 7132148 7132208 -182147346 - L2 LINE L2 -1 3312 3255 236 290 121 0 chr6 7132301 7132425 -182147129 - L2 LINE L2 -351 2962 2824 1449 214 46 89 chr6 7132455 7133108 -182146446 + L1MC5 LINE L1 7300 7924 -37 1142 210 25 18 chr6 7133404 7133685 -182145869 + L1ME3 LINE L1 5648 5930 -232 476 243 128 7 chr6 7133708 7133856 -182145698 + L1ME3 LINE L1 5989 6154 -8 25 31 0 0 chr6 7133866 7133898 -182145656 + AT_rich Low_complexity Low_complexity 1 32 0 1500 151 55 27 chr6 7133963 7134255 -182145299 - AluJb SINE Alu -8 304 5 253 307 0 0 chr6 7134282 7134357 -182145197 + MER94 DNA DNA 3 77 -57 883 148 0 0 chr6 7134357 7134485 -182145069 + FLAM_C SINE Alu 1 128 -5 379 320 11 55 chr6 7134595 7134776 -182144778 - MER5B DNA MER1_type 0 178 6 477 213 46 19 chr6 7135080 7135188 -182144366 - MER81 DNA DNA -1 113 3 2045 102 58 0 chr6 7135867 7136161 -182143393 + AluSp SINE Alu 1 311 -2 2143 115 0 6 chr6 7136309 7136623 -182142931 + AluSx SINE Alu 1 312 0 279 356 83 8 chr6 7136917 7137049 -182142505 + MIR3 SINE MIR 60 201 -7 542 259 80 4 chr6 7137128 7137375 -182142179 + L1MB3 LINE L1 5263 5523 -639 1996 101 20 33 chr6 7138224 7138530 -182141024 + AluSx SINE Alu 1 302 -10 253 312 32 32 chr6 7138957 7139050 -182140504 - MIR SINE MIR -112 150 58 516 334 34 61 chr6 7139571 7139897 -182139657 + L2 LINE L2 2914 3230 -42 1823 142 3 16 chr6 7140325 7140634 -182138920 - AluJo SINE Alu -7 305 1 1100 146 16 5 chr6 7140866 7141051 -182138503 + MER5A DNA MER1_type 3 189 0 528 286 10 46 chr6 7141063 7141259 -182138295 + L2 LINE L2 3124 3312 -1 1979 109 0 7 chr6 7141958 7142243 -182137311 + AluSx SINE Alu 7 289 -23 514 191 191 0 chr6 7144842 7144952 -182134602 + FLAM_C SINE Alu 2 132 -11 23 0 0 0 chr6 7144954 7144977 -182134577 + AT_rich Low_complexity Low_complexity 1 23 0 287 256 80 16 chr6 7145092 7145217 -182134337 + L2 LINE L2 2148 2280 -1034 1517 173 35 7 chr6 7145586 7145869 -182133685 + AluJo SINE Alu 1 291 -21 180 0 0 0 chr6 7145875 7145895 -182133659 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2180 100 0 0 chr6 7146485 7146785 -182132769 + AluSx SINE Alu 1 300 -12 1686 161 29 0 chr6 7147587 7147861 -182131693 + AluJb SINE Alu 1 282 -30 1890 132 0 11 chr6 7148062 7148349 -182131205 + AluSx SINE Alu 11 294 -18 1634 136 3 103 chr6 7148704 7149035 -182130519 + AluJb SINE Alu 5 302 -10 3437 183 27 0 chr6 7149230 7149860 -182129694 + L1MB3 LINE L1 5537 6183 0 792 107 0 0 chr6 7150731 7150834 -182128720 + AluJb SINE Alu 3 105 -207 1707 202 44 41 chr6 7151057 7151444 -182128110 - MLT1B LTR MaLR -2 388 1 417 315 43 16 chr6 7151478 7151662 -182127892 - MIR SINE MIR -46 216 28 2034 126 0 16 chr6 7152085 7152402 -182127152 - AluJb SINE Alu 0 312 1 272 250 0 0 chr6 7152428 7152504 -182127050 + A-rich Low_complexity Low_complexity 1 76 0 436 252 10 19 chr6 7153187 7153290 -182126264 + MER81 DNA DNA 11 112 -2 864 246 61 36 chr6 7154323 7154600 -182124954 + L1ME2 LINE L1 5758 6041 -123 840 211 0 0 chr6 7154602 7154763 -182124791 + FRAM SINE Alu 1 160 -16 354 216 82 21 chr6 7154763 7154860 -182124694 + L1ME2 LINE L1 6034 6136 -28 1721 167 0 26 chr6 7154873 7155178 -182124376 - AluSx SINE Alu -15 297 1 1638 164 3 7 chr6 7155225 7155511 -182124043 + AluJb SINE Alu 3 287 -25 209 58 77 0 chr6 7155511 7155563 -182123991 + (TA)n Simple_repeat Simple_repeat 1 56 0 312 361 19 0 chr6 7155597 7155705 -182123849 + L1MC4 LINE L1 6617 6726 -1316 212 271 0 0 chr6 7155828 7155876 -182123678 - L2 LINE L2 -35 3278 3231 347 338 136 49 chr6 7156206 7156700 -182122854 - L2 LINE L2 -534 2780 2244 199 296 0 19 chr6 7156826 7156880 -182122674 + MIR3 SINE MIR 13 65 -143 833 126 8 0 chr6 7157260 7157379 -182122175 + AluJb SINE Alu 5 124 -188 364 215 161 11 chr6 7157384 7157477 -182122077 - MER45 DNA AcHobo -933 107 1 560 322 70 13 chr6 7157505 7157735 -182121819 + MIR SINE MIR 12 254 -8 335 328 107 0 chr6 7158896 7159027 -182120527 + LTR67 LTR ERVL 40 184 -373 2018 114 17 0 chr6 7159690 7159989 -182119565 + AluSg SINE Alu 1 304 -6 1224 206 24 14 chr6 7160018 7160309 -182119245 - AluJo SINE Alu -17 295 2 207 0 0 0 chr6 7160373 7160396 -182119158 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1903 88 84 0 chr6 7160398 7160671 -182118883 - AluSg SINE Alu -14 296 1 366 267 64 97 chr6 7160681 7161026 -182118528 + L1M4 LINE L1 3073 3402 -2744 1624 167 10 23 chr6 7161050 7161330 -182118224 + AluJb SINE Alu 1 278 -34 183 42 0 0 chr6 7161330 7161354 -182118200 + (CA)n Simple_repeat Simple_repeat 1 24 0 1624 167 10 23 chr6 7161354 7161378 -182118176 + AluJb SINE Alu 278 301 -11 2165 104 0 0 chr6 7161388 7161725 -182117829 + AluSx SINE Alu 1 337 0 1746 150 14 10 chr6 7161962 7162255 -182117299 - AluSx SINE Alu -18 294 1 338 362 107 31 chr6 7162267 7162463 -182117091 + L1MC4 LINE L1 6493 6703 -1339 283 190 0 35 chr6 7162465 7162523 -182117031 + L1MC5 LINE L1 6790 6845 -1116 1655 165 3 10 chr6 7162523 7162658 -182116896 + AluJo SINE Alu 1 135 -177 1596 136 0 4 chr6 7162658 7162908 -182116646 + AluSx SINE Alu 50 298 -14 1655 165 3 10 chr6 7162908 7163063 -182116491 + AluJo SINE Alu 135 289 -23 27 29 0 0 chr6 7163063 7163097 -182116457 + AT_rich Low_complexity Low_complexity 1 34 0 2057 118 3 3 chr6 7163104 7163408 -182116146 + AluSc SINE Alu 1 304 -5 312 194 0 133 chr6 7163409 7163507 -182116047 + L1MC4 LINE L1 6837 7002 -1040 2158 113 0 10 chr6 7163509 7163820 -182115734 + AluSx SINE Alu 1 308 -4 514 202 54 64 chr6 7163903 7164106 -182115448 + L1MC5 LINE L1 6959 7159 -802 1622 173 11 14 chr6 7164107 7164419 -182115135 + AluJo SINE Alu 1 311 0 521 158 0 98 chr6 7164431 7164564 -182114990 + L1MC5 LINE L1 7145 7264 -697 424 221 44 18 chr6 7164561 7164674 -182114880 - L1MC4a LINE L1 -422 7386 7271 * 2056 107 0 10 chr6 7164721 7165031 -182114523 + AluSc SINE Alu 1 307 -2 432 296 124 5 chr6 7165158 7165344 -182114210 + LTR67 LTR ERVL 350 557 0 327 25 0 0 chr6 7165364 7165404 -182114150 + (TG)n Simple_repeat Simple_repeat 1 40 0 1549 171 11 11 chr6 7165678 7165965 -182113589 + AluJo SINE Alu 1 287 -25 207 0 0 0 chr6 7166104 7166127 -182113427 + (TTA)n Simple_repeat Simple_repeat 2 24 0 821 120 8 0 chr6 7166141 7166258 -182113296 - FLAM_C SINE Alu -15 118 1 765 289 125 14 chr6 7166413 7166780 -182112774 + MLT1I LTR MaLR 1 408 -1 346 322 29 47 chr6 7166782 7166953 -182112601 - MIR SINE MIR -16 246 79 362 237 0 13 chr6 7167162 7167238 -182112316 + Tigger5 DNA MER2_type 1 75 -2248 258 192 19 0 chr6 7167255 7167307 -182112247 - Tigger5 DNA MER2_type -20 2303 2251 1795 155 14 3 chr6 7167321 7167618 -182111936 + AluJb SINE Alu 2 301 -11 426 167 0 0 chr6 7167620 7167686 -182111868 + Tigger5 DNA MER2_type 2258 2323 0 255 240 154 23 chr6 7167842 7167992 -182111562 + MIR SINE MIR 23 201 -61 1400 177 108 63 chr6 7167992 7168371 -182111183 + MSTD LTR MaLR 1 396 0 255 240 154 23 chr6 7168371 7168390 -182111164 + MIR SINE MIR 201 216 -46 270 249 13 81 chr6 7169022 7169143 -182110411 - MIR SINE MIR -84 124 20 1411 227 31 68 chr6 7169152 7169462 -182110092 + MER58B DNA MER1_type 3 300 -2120 849 158 0 23 chr6 7169462 7169595 -182109959 - FLAM_C SINE Alu -3 130 1 1411 227 31 68 chr6 7169595 7169636 -182109918 + MER58B DNA MER1_type 300 341 0 232 267 0 17 chr6 7169666 7169726 -182109828 - MIR SINE MIR -122 140 82 485 266 5 65 chr6 7170516 7170700 -182108854 + L1MC4a LINE L1 7636 7808 0 2001 139 0 0 chr6 7170701 7171003 -182108551 + AluSx SINE Alu 1 302 -10 850 225 5 27 chr6 7171007 7171194 -182108360 + AluJb SINE Alu 130 312 0 411 169 13 0 chr6 7171199 7171276 -182108278 + MER116 DNA Mariner 2 79 -1 2207 82 0 0 chr6 7171893 7172173 -182107381 + AluSp SINE Alu 1 280 -33 393 75 0 0 chr6 7172179 7172232 -182107322 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 1054 211 30 35 chr6 7172662 7172768 -182106786 - MLT1C LTR MaLR -16 451 346 592 229 91 108 chr6 7172768 7173174 -182106380 - MER93a LTR ERV1 -3 399 1 1054 211 30 35 chr6 7173174 7173299 -182106255 - MLT1C LTR MaLR -121 346 221 1017 112 0 0 chr6 7173312 7173455 -182106099 - FLAM_C SINE Alu 0 143 1 1693 154 6 26 chr6 7173457 7173769 -182105785 - AluJb SINE Alu -6 306 1 1326 133 43 0 chr6 7173769 7173980 -182105574 - MLT1C LTR MaLR -233 234 15 247 392 8 0 chr6 7174240 7174365 -182105189 + MIR3 SINE MIR 30 155 -53 183 148 0 0 chr6 7175538 7175565 -182103989 - MIR SINE MIR -99 109 83 221 284 153 9 chr6 7175629 7175775 -182103779 + MIR SINE MIR 5 140 -68 739 187 0 8 chr6 7176612 7176746 -182102808 + FLAM_C SINE Alu 1 133 0 318 284 14 85 chr6 7176921 7177010 -182102544 + L1MB3 LINE L1 5562 5639 -482 848 219 0 0 chr6 7177010 7177179 -182102375 - L1PA16 LINE L1 -17 6149 5981 318 284 14 85 chr6 7177179 7177230 -182102324 + L1MB3 LINE L1 5639 5692 -429 293 240 10 39 chr6 7177266 7177370 -182102184 + L1ME4a LINE L1 5990 6090 -31 2457 162 18 16 chr6 7177370 7177820 -182101734 + L1MB3 LINE L1 5733 6183 0 1949 116 24 10 chr6 7177895 7178187 -182101367 + AluSx SINE Alu 1 296 -16 1574 150 14 31 chr6 7178651 7178937 -182100617 + AluJo SINE Alu 1 281 -31 1584 174 9 43 chr6 7178938 7179260 -182100294 + AluJo SINE Alu 1 311 -1 2164 119 0 0 chr6 7179288 7179599 -182099955 + AluSx SINE Alu 1 311 -1 1513 140 17 0 chr6 7179599 7179835 -182099719 - L1MB2 LINE L1 -251 5920 5681 229 240 200 30 chr6 7179927 7180027 -182099527 - MIR3 SINE MIR -3 205 89 1350 133 195 8 chr6 7181188 7181444 -182098110 + AluSg1 SINE Alu 1 304 -5 1534 159 19 48 chr6 7181464 7181778 -182097776 + AluJb SINE Alu 6 310 -2 303 203 0 0 chr6 7181793 7181862 -182097692 + GA-rich Low_complexity Low_complexity 4 72 0 543 148 218 0 chr6 7181872 7181973 -182097581 + AluJb SINE Alu 2 124 -188 22 35 0 0 chr6 7182177 7182206 -182097348 + AT_rich Low_complexity Low_complexity 1 29 0 2058 120 7 3 chr6 7182577 7182876 -182096678 + AluSq SINE Alu 1 300 -13 1617 131 3 125 chr6 7183459 7183803 -182095751 + AluJo SINE Alu 1 302 0 186 43 0 0 chr6 7183821 7183844 -182095710 + (TG)n Simple_repeat Simple_repeat 2 24 0 338 253 48 0 chr6 7183944 7184027 -182095527 - L1MC4 LINE L1 -1342 6700 6614 317 348 0 0 chr6 7183949 7184038 -182095516 + L1MC4 LINE L1 6614 6702 -1340 * 1663 155 7 4 chr6 7185182 7185460 -182094094 + AluJo SINE Alu 12 290 -22 24 0 0 0 chr6 7185460 7185484 -182094070 + AT_rich Low_complexity Low_complexity 1 24 0 3144 65 5 0 chr6 7185769 7186170 -182093384 - L1PA8A LINE L1 -27 6104 5702 22 0 0 0 chr6 7186436 7186458 -182093096 + AT_rich Low_complexity Low_complexity 1 22 0 2016 114 7 0 chr6 7186696 7186995 -182092559 + AluY SINE Alu 1 301 -10 2270 63 0 26 chr6 7187599 7187901 -182091653 + AluY SINE Alu 1 294 -17 197 302 143 0 chr6 7188335 7188398 -182091156 - L2 LINE L2 -3 3310 3239 54 73 0 0 chr6 7188464 7188574 -182090980 + AT_rich Low_complexity Low_complexity 1 110 0 1607 159 4 7 chr6 7188595 7188871 -182090683 - AluJo SINE Alu -17 295 21 2254 107 3 0 chr6 7188929 7189239 -182090315 - AluSx SINE Alu -1 311 1 608 202 0 0 chr6 7189606 7189705 -182089849 - AluJ/FLAM SINE Alu -212 100 2 659 237 31 36 chr6 7190024 7190240 -182089314 + MIR SINE MIR 46 261 -1 1964 118 37 0 chr6 7190245 7190542 -182089012 - AluSx SINE Alu -4 308 1 610 330 172 12 chr6 7190583 7191171 -182088383 + L2 LINE L2 1965 2646 -668 847 122 0 0 chr6 7191598 7191713 -182087841 + AluSq/x SINE Alu 10 124 -188 3749 156 30 66 chr6 7191714 7192221 -182087333 + L1MB8 LINE L1 5308 5832 -346 1903 99 102 0 chr6 7192221 7192504 -182087050 + AluSx SINE Alu 1 312 0 3749 156 30 66 chr6 7192504 7192596 -182086958 + L1MB8 LINE L1 5832 5926 -252 1792 150 20 3 chr6 7192596 7192890 -182086664 - AluJb SINE Alu -13 299 1 3749 156 30 66 chr6 7192890 7193096 -182086458 + L1MB8 LINE L1 5926 6085 -93 531 118 0 0 chr6 7193308 7193393 -182086161 + (TA)n Simple_repeat Simple_repeat 2 86 0 22 0 0 0 chr6 7193450 7193472 -182086082 + AT_rich Low_complexity Low_complexity 1 22 0 1430 166 88 3 chr6 7193490 7193774 -182085780 + AluJb SINE Alu 1 308 -4 503 318 72 40 chr6 7193778 7194124 -182085430 + L1MC/D LINE L1 3286 3642 -2504 185 150 0 25 chr6 7194163 7194203 -182085351 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 776 145 8 23 chr6 7194257 7194388 -182085166 - AluSp/q SINE Alu -14 299 171 2182 103 0 0 chr6 7194388 7194689 -182084865 + AluSq SINE Alu 5 305 -8 461 261 71 69 chr6 7194696 7194724 -182084830 + L1MC/D LINE L1 5352 5378 -743 342 67 0 0 chr6 7194724 7194769 -182084785 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 461 261 71 69 chr6 7194769 7195061 -182084493 + L1MC/D LINE L1 5378 5672 -449 712 235 34 0 chr6 7195078 7195227 -182084327 - MLT1E1 LTR MaLR -7 647 494 846 143 0 0 chr6 7195259 7195385 -182084169 - FLAM_C SINE Alu -3 130 5 353 141 3 7 chr6 7195385 7195400 -182084154 - Alu SINE Alu -3 298 284 2172 105 0 10 chr6 7195400 7195706 -182083848 - AluSx SINE Alu -9 303 1 353 141 3 7 chr6 7195706 7195763 -182083791 - Alu SINE Alu -17 284 243 622 248 90 85 chr6 7195763 7196199 -182083355 - MLT1E LTR MaLR -136 518 11 1433 158 0 0 chr6 7196199 7196420 -182083134 + AluJo SINE Alu 1 221 -91 341 93 0 0 chr6 7196585 7196628 -182082926 + Alu SINE Alu 235 277 -25 2164 110 3 0 chr6 7196632 7196940 -182082614 - AluSx SINE Alu -3 309 1 273 254 61 43 chr6 7197026 7197211 -182082343 + L1MC/D LINE L1 5723 5829 -530 671 188 8 16 chr6 7197581 7197822 -182081732 + AluJ SINE Alu 2 133 -169 386 338 33 7 chr6 7197956 7198107 -182081447 + L2 LINE L2 3147 3301 -12 346 308 62 15 chr6 7198157 7198287 -182081267 + L2 LINE L2 2910 3045 -227 2132 107 3 0 chr6 7198308 7198599 -182080955 + AluSg SINE Alu 1 292 -18 22419 99 17 13 chr6 7198737 7201974 -182077580 + L1PA6 LINE L1 11 3261 -2885 7199 50 6 2 chr6 7201974 7203364 -182076190 + L1PA6 LINE L1 4762 6154 0 217 331 123 13 chr6 7203542 7203696 -182075858 + L2 LINE L2 3102 3272 0 917 179 6 0 chr6 7204346 7204514 -182075040 + AluJ SINE Alu 134 302 -10 2126 109 0 26 chr6 7204540 7204852 -182074702 + AluSq SINE Alu 1 304 -9 1670 172 34 0 chr6 7205622 7205918 -182073636 + AluJb SINE Alu 1 306 -6 207 69 0 0 chr6 7206494 7206523 -182073031 + (TC)n Simple_repeat Simple_repeat 2 30 0 198 0 0 0 chr6 7206638 7206660 -182072894 + (CA)n Simple_repeat Simple_repeat 2 23 0 1813 162 0 7 chr6 7206791 7207088 -182072466 + AluJo SINE Alu 1 295 -17 2100 88 0 11 chr6 7207127 7207411 -182072143 - AluSx SINE Alu -17 295 15 227 206 0 48 chr6 7207534 7207597 -182071957 + AluJo SINE Alu 75 134 -168 587 209 124 0 chr6 7207664 7207793 -182071761 - MIR SINE MIR 0 262 118 759 122 0 0 chr6 7207810 7207917 -182071637 + FRAM SINE Alu 65 171 -5 333 304 0 0 chr6 7207918 7207997 -182071557 - MIR SINE MIR -182 80 2 1424 173 24 34 chr6 7208800 7209095 -182070459 - AluJb SINE Alu -9 303 12 195 179 0 26 chr6 7209208 7209247 -182070307 + L2 LINE L2 3276 3313 0 540 304 207 52 chr6 7209275 7209312 -182070242 - L2 LINE L2 -3 3269 3239 2280 157 171 28 chr6 7209312 7209808 -182069746 + MLT1F1 LTR MaLR 1 567 0 540 304 207 52 chr6 7209808 7210966 -182068588 - L2 LINE L2 -33 3239 1873 2229 94 0 0 chr6 7210990 7211287 -182068267 - AluY SINE Alu -14 297 1 2308 104 0 0 chr6 7211325 7211634 -182067920 - AluSg SINE Alu -1 309 1 431 269 134 7 chr6 7212042 7212191 -182067363 + MIR SINE MIR 75 242 -20 187 211 18 88 chr6 7212161 7212218 -182067336 + L2 LINE L2 3217 3269 -3 * 201 39 0 0 chr6 7212295 7212321 -182067233 + (TG)n Simple_repeat Simple_repeat 2 27 0 271 212 200 0 chr6 7212324 7212409 -182067145 - U13 snRNA snRNA 0 104 3 1971 84 22 0 chr6 7212531 7212831 -182066723 - AluSc SINE Alu 0 306 1 198 0 0 0 chr6 7212831 7212853 -182066701 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 1693 149 0 24 chr6 7212853 7213142 -182066412 - AluJo SINE Alu -30 282 1 195 218 55 18 chr6 7213175 7213230 -182066324 + L2 LINE L2 3216 3272 0 215 272 88 40 chr6 7214267 7214392 -182065162 - MIR SINE MIR -61 147 17 231 61 0 0 chr6 7215392 7215425 -182064129 + (CA)n Simple_repeat Simple_repeat 2 34 0 2130 98 23 10 chr6 7215480 7215786 -182063768 + AluSx SINE Alu 2 311 -1 871 104 0 0 chr6 7216153 7216268 -182063286 + FLAM_C SINE Alu 4 118 -15 2292 93 3 7 chr6 7216557 7216858 -182062696 + AluSx SINE Alu 1 300 -12 553 232 66 13 chr6 7217508 7217659 -182061895 + MIR SINE MIR 28 186 -76 207 0 0 0 chr6 7217884 7217907 -182061647 + (A)n Simple_repeat Simple_repeat 1 23 0 219 69 0 0 chr6 7218299 7218328 -182061226 + (GA)n Simple_repeat Simple_repeat 2 30 0 1176 129 0 12 chr6 7218436 7218606 -182060948 + AluSg/x SINE Alu 121 288 -24 723 189 115 80 chr6 7219537 7219849 -182059705 - L1MC5 LINE L1 -30 7931 7609 382 335 37 12 chr6 7220122 7220283 -182059271 + MIR3 SINE MIR 21 185 -23 279 399 43 6 chr6 7220458 7220621 -182058933 + L2 LINE L2 3104 3272 0 189 254 14 84 chr6 7220637 7220708 -182058846 + MIR SINE MIR 141 206 -56 1718 179 10 23 chr6 7220834 7221142 -182058412 - AluJo SINE Alu -8 304 1 2347 94 0 3 chr6 7221193 7221492 -182058062 - AluSp SINE Alu -15 298 1 349 200 19 150 chr6 7222007 7222167 -182057387 - MER103 DNA DNA -11 155 17 358 133 51 43 chr6 7222169 7222295 -182057259 - HsTC2 DNA Tc2 -44 1854 9 21 0 0 0 chr6 7223573 7223594 -182055960 + GC_rich Low_complexity Low_complexity 1 21 0 34 55 0 0 chr6 7223718 7223773 -182055781 + GC_rich Low_complexity Low_complexity 1 55 0 189 107 0 0 chr6 7224315 7224343 -182055211 + (CGGGGG)n Simple_repeat Simple_repeat 1 28 0 192 77 0 0 chr6 7224456 7224482 -182055072 + (GGA)n Simple_repeat Simple_repeat 1 26 0 2336 96 0 0 chr6 7225819 7226122 -182053432 + AluY SINE Alu 1 303 -8 736 161 0 58 chr6 7226173 7226310 -182053244 - FLAM_C SINE Alu -13 130 2 332 137 0 0 chr6 7227116 7227167 -182052387 - FAM SINE Alu -10 165 115 2440 94 3 0 chr6 7227167 7227475 -182052079 - AluSp SINE Alu -4 309 1 2155 123 0 7 chr6 7227517 7227825 -182051729 + AluSx SINE Alu 1 306 -6 2487 61 0 0 chr6 7227874 7228170 -182051384 + AluY SINE Alu 1 296 -15 200 216 0 0 chr6 7228456 7228493 -182051061 + GA-rich Low_complexity Low_complexity 2 38 0 629 174 41 8 chr6 7229361 7229482 -182050072 + FLAM_C SINE Alu 1 125 -8 44 63 0 0 chr6 7229482 7229561 -182049993 + AT_rich Low_complexity Low_complexity 1 79 0 195 345 17 17 chr6 7229687 7229746 -182049808 + MER5A DNA MER1_type 68 126 -63 2352 92 0 7 chr6 7229746 7230049 -182049505 - AluSc SINE Alu -8 301 1 195 345 17 17 chr6 7230049 7230108 -182049446 + MER5A DNA MER1_type 125 186 -3 594 144 0 0 chr6 7231167 7231279 -182048275 + AluSg/x SINE Alu 195 306 0 504 103 4 0 chr6 7231279 7231356 -182048198 - L1MB2 LINE L1 -32 6136 6058 2176 114 0 0 chr6 7231624 7231914 -182047640 + AluSg SINE Alu 1 290 -20 234 208 0 0 chr6 7231914 7231962 -182047592 + AluJ/monomer SINE Alu 1 48 -251 2192 129 0 0 chr6 7232006 7232308 -182047246 - AluSx SINE Alu -10 302 1 2058 118 0 14 chr6 7233161 7233488 -182046066 - AluSx SINE Alu 0 323 1 759 155 0 0 chr6 7233858 7233974 -182045580 + FLAM_C SINE Alu 1 116 -17 356 171 0 85 chr6 7235077 7235159 -182044395 + Charlie7 DNA MER1_type 37 111 -2501 786 166 59 130 chr6 7235162 7235236 -182044318 - L1MB4 LINE L1 -2 6178 6100 2396 80 0 3 chr6 7235236 7235525 -182044029 - AluSq SINE Alu -25 288 1 786 166 59 130 chr6 7235525 7235703 -182043851 - L1MB4 LINE L1 -80 6100 5944 752 183 0 0 chr6 7235716 7235831 -182043723 - AluSq/x SINE Alu -197 116 2 1436 135 35 45 chr6 7235832 7236120 -182043434 - L1MB4 LINE L1 -564 5610 5326 1976 150 3 0 chr6 7236124 7236460 -182043094 + AluSx SINE Alu 1 337 0 250 222 30 12 chr6 7236829 7236904 -182042650 + AluS SINE Alu 1 61 -238 1289 102 19 10 chr6 7237005 7237210 -182042344 + AluY SINE Alu 82 288 -23 2544 55 0 0 chr6 7237328 7237638 -182041916 - AluY SINE Alu -1 310 1 2540 71 0 7 chr6 7237711 7238020 -182041534 - AluSg SINE Alu -3 307 1 2422 71 0 16 chr6 7238205 7238516 -182041038 + AluY SINE Alu 1 306 -5 2373 92 0 3 chr6 7238673 7238978 -182040576 + AluSq SINE Alu 1 304 -9 26 69 0 14 chr6 7239018 7239035 -182040519 + AT_rich Low_complexity Low_complexity 1 17 -54 2241 104 0 0 chr6 7239035 7239322 -182040232 - AluSg SINE Alu -23 287 1 26 69 0 14 chr6 7239322 7239376 -182040178 + AT_rich Low_complexity Low_complexity 17 71 0 1761 129 10 34 chr6 7239456 7239750 -182039804 - AluJo SINE Alu -3 309 23 1784 129 86 4 chr6 7239769 7240047 -182039507 - AluSq SINE Alu -12 301 1 893 158 0 0 chr6 7240585 7240718 -182038836 + FLAM_C SINE Alu 1 133 0 2116 160 0 0 chr6 7241014 7241321 -182038233 - AluJb SINE Alu -5 307 1 2072 120 6 19 chr6 7241341 7241657 -182037897 - AluSq SINE Alu 0 313 2 930 294 59 15 chr6 7241667 7242075 -182037479 - L1ME3A LINE L1 -220 5950 5525 2324 109 0 0 chr6 7242081 7242385 -182037169 - AluSx SINE Alu -8 304 1 558 156 45 78 chr6 7242413 7242477 -182037077 - L1MA9 LINE L1 0 6312 6247 2155 134 0 0 chr6 7242477 7242782 -182036772 + AluJb SINE Alu 1 305 -7 558 156 45 78 chr6 7242782 7242871 -182036683 - L1MA9 LINE L1 -65 6247 6164 1605 198 7 20 chr6 7242889 7243187 -182036367 + AluJo SINE Alu 1 294 -18 653 242 85 42 chr6 7243191 7243451 -182036103 - L1ME3A LINE L1 -633 5531 5261 259 159 14 43 chr6 7243513 7243582 -182035972 - L1ME3A LINE L1 -896 5250 5184 2442 85 3 0 chr6 7243633 7243939 -182035615 - AluSx SINE Alu -5 307 1 708 285 79 65 chr6 7243939 7244571 -182034983 - L1ME3A LINE L1 -976 5170 4530 576 210 46 149 chr6 7244581 7244843 -182034711 + MIR SINE MIR 2 236 -26 2143 116 6 61 chr6 7244943 7245289 -182034265 - MER7A DNA MER2_type 0 346 22 25 31 0 0 chr6 7245394 7245426 -182034128 + AT_rich Low_complexity Low_complexity 1 32 0 2034 120 0 3 chr6 7245571 7245884 -182033670 + AluSq SINE Alu 1 312 0 288 232 0 14 chr6 7246263 7246332 -182033222 + FLAM_A SINE Alu 66 133 0 261 83 0 0 chr6 7246816 7246852 -182032702 + (T)n Simple_repeat Simple_repeat 1 36 0 2311 88 3 3 chr6 7247087 7247381 -182032173 - AluSc SINE Alu -15 294 1 1061 103 0 0 chr6 7247381 7247517 -182032037 - AluSq/x SINE Alu -177 136 1 735 162 0 0 chr6 7247559 7247676 -182031878 + FLAM_A SINE Alu 1 117 -16 334 0 0 42 chr6 7247684 7247732 -182031822 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 416 224 269 6 chr6 7247733 7247889 -182031665 - MIR SINE MIR -4 258 62 322 283 38 38 chr6 7248230 7248389 -182031165 - MIR SINE MIR -25 237 79 2333 93 0 0 chr6 7248886 7249177 -182030377 - AluY SINE Alu -20 291 1 302 296 152 8 chr6 7249216 7249348 -182030206 - MIR3 SINE MIR -28 180 30 736 121 129 0 chr6 7250017 7250133 -182029421 + FLAM_A SINE Alu 1 131 -2 543 136 0 0 chr6 7250190 7250278 -182029276 - MER2 DNA MER2_type -135 210 123 904 141 0 15 chr6 7250279 7250414 -182029140 + FLAM_C SINE Alu 1 133 0 726 212 8 0 chr6 7250460 7250592 -182028962 - MER2 DNA MER2_type -210 135 3 326 222 25 0 chr6 7250692 7250773 -182028781 - L1ME3A LINE L1 -9 6161 6079 401 202 103 21 chr6 7250796 7250939 -182028615 + MIR SINE MIR 45 201 -59 2590 58 0 7 chr6 7251007 7251316 -182028238 + AluY SINE Alu 2 308 -3 770 148 0 16 chr6 7251526 7251648 -182027906 + FLAM_C SINE Alu 3 122 -11 493 189 13 26 chr6 7251669 7251822 -182027732 + GA-rich Low_complexity Low_complexity 3 153 0 2281 115 0 0 chr6 7251858 7252163 -182027391 + AluSx SINE Alu 1 305 -7 1968 122 29 0 chr6 7252456 7252735 -182026819 - AluSx SINE Alu -25 287 1 1344 101 0 0 chr6 7252740 7252938 -182026616 - L1MA5 LINE L1 -2 6298 6101 314 187 67 13 chr6 7252949 7253024 -182026530 - L1MA5A LINE L1 -172 6125 6047 2345 88 13 0 chr6 7253493 7253801 -182025753 + AluSx SINE Alu 1 312 0 1266 177 72 16 chr6 7254005 7254254 -182025300 + AluJo SINE Alu 33 295 -17 2391 97 3 0 chr6 7254328 7254639 -182024915 + AluSx SINE Alu 1 312 0 436 108 14 14 chr6 7254639 7254713 -182024841 + Charlie1 DNA MER1_type 2688 2761 0 207 352 46 19 chr6 7254873 7254981 -182024573 - L2 LINE L2 -18 3295 3185 410 324 77 6 chr6 7255077 7255247 -182024307 - MIR SINE MIR -26 236 55 2207 111 10 3 chr6 7256030 7256336 -182023218 - AluSx SINE Alu -4 308 1 2335 86 0 0 chr6 7256636 7256928 -182022626 + AluY SINE Alu 1 292 -19 2310 98 0 0 chr6 7256941 7257236 -182022318 + AluSx SINE Alu 3 297 -15 266 211 178 0 chr6 7257875 7257965 -182021589 + MIR SINE MIR 87 192 -70 2396 73 10 0 chr6 7258110 7258410 -182021144 + AluSp SINE Alu 1 303 -10 288 249 24 133 chr6 7258874 7259039 -182020515 + MIR3 SINE MIR 33 179 -29 4376 139 16 22 chr6 7260718 7261486 -182018068 - L1MB3 LINE L1 -7 6176 5414 351 238 0 12 chr6 7261950 7262030 -182017524 + MIR SINE MIR 20 98 -164 310 334 30 30 chr6 7262114 7262413 -182017141 - L1M4 LINE L1 -1898 4248 3950 1295 117 20 101 chr6 7262905 7263069 -182016485 + MER30 DNA MER1_type 3 143 -87 2280 74 7 3 chr6 7263069 7263387 -182016167 - AluSx SINE Alu 0 319 1 1295 117 20 101 chr6 7263387 7263469 -182016085 + MER30 DNA MER1_type 143 230 0 21 0 0 0 chr6 7263517 7263538 -182016016 + AT_rich Low_complexity Low_complexity 1 21 0 942 132 0 21 chr6 7263567 7263711 -182015843 + AluJo SINE Alu 1 141 -171 2255 104 3 19 chr6 7263711 7264027 -182015527 + AluSx SINE Alu 1 311 -1 300 223 84 62 chr6 7264033 7264250 -182015304 - L1ME4a LINE L1 -218 5903 5681 191 88 29 0 chr6 7264324 7264358 -182015196 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1891 80 13 0 chr6 7264368 7264607 -182014947 - AluSp SINE Alu -58 255 14 2502 65 0 0 chr6 7264622 7264932 -182014622 - AluY SINE Alu -1 310 1 336 153 0 19 chr6 7264946 7265011 -182014543 + Alu SINE Alu 1 47 -255 273 236 149 63 chr6 7265014 7265188 -182014366 - L1ME4a LINE L1 -656 5465 5277 524 285 69 69 chr6 7265189 7265338 -182014216 + MIR SINE MIR 3 151 -111 2216 107 0 0 chr6 7265338 7265636 -182013918 + AluSx SINE Alu 1 298 -14 1908 109 39 3 chr6 7265639 7265923 -182013631 + AluSc SINE Alu 1 294 -15 524 285 69 69 chr6 7265923 7266015 -182013539 + MIR SINE MIR 152 248 -14 415 287 137 92 chr6 7266054 7266235 -182013319 - L1ME4a LINE L1 -912 5234 5063 2334 83 0 10 chr6 7266235 7266548 -182013006 - AluSq SINE Alu -3 310 1 415 287 137 92 chr6 7266548 7266611 -182012943 - L1ME4a LINE L1 -1083 5063 5004 1691 167 3 7 chr6 7266611 7266774 -182012780 - AluJb SINE Alu -20 292 130 348 24 0 0 chr6 7266774 7266815 -182012739 + (TTG)n Simple_repeat Simple_repeat 1 41 0 1681 135 0 19 chr6 7266815 7267075 -182012479 - AluSx SINE Alu -31 281 27 1691 167 3 7 chr6 7267075 7267203 -182012351 - AluJb SINE Alu -180 132 1 2215 103 7 3 chr6 7267212 7267522 -182012032 - AluSq SINE Alu -2 311 1 415 287 137 92 chr6 7267522 7267691 -182011863 - L1ME4a LINE L1 -1149 4997 4791 379 323 65 8 chr6 7267875 7267999 -182011555 + MIR3 SINE MIR 14 144 -64 2012 115 0 35 chr6 7268112 7268425 -182011129 + AluSx SINE Alu 1 302 -10 1432 141 33 21 chr6 7268524 7268766 -182010788 - L1PB4 LINE L1 0 6156 5912 21 0 0 0 chr6 7268773 7268794 -182010760 + AT_rich Low_complexity Low_complexity 1 21 0 1743 175 0 0 chr6 7268802 7269088 -182010466 + AluJo SINE Alu 6 291 -21 193 146 42 0 chr6 7269112 7269160 -182010394 + (TA)n Simple_repeat Simple_repeat 2 51 0 200 252 65 9 chr6 7269161 7269268 -182010286 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 230 150 25 25 chr6 7269282 7269362 -182010192 + (TA)n Simple_repeat Simple_repeat 1 80 0 2075 107 10 3 chr6 7269387 7269686 -182009868 - AluSc SINE Alu -8 301 1 1604 150 42 71 chr6 7269764 7269908 -182009646 - MLT1B LTR MaLR -46 344 197 2004 131 0 10 chr6 7269908 7270222 -182009332 - AluY SINE Alu 0 311 1 1604 150 42 71 chr6 7270222 7270337 -182009217 - MLT1B LTR MaLR -193 197 80 1725 109 94 0 chr6 7270337 7270593 -182008961 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr6 7270593 7270614 -182008940 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1604 150 42 71 chr6 7270614 7270706 -182008848 - MLT1B LTR MaLR -308 82 1 742 173 8 24 chr6 7271706 7271833 -182007721 - FLAM_A SINE Alu -8 125 1 1238 151 18 14 chr6 7271864 7272082 -182007472 - MER20 DNA MER1_type 0 219 1 1407 78 0 0 chr6 7272416 7272595 -182006959 - AluSg/x SINE Alu -7 305 127 539 294 51 25 chr6 7272670 7272905 -182006649 + MIR SINE MIR 20 260 -2 1024 159 53 39 chr6 7273104 7273311 -182006243 - L1PB4 LINE L1 0 6156 5947 279 303 34 51 chr6 7274079 7274313 -182005241 + L2 LINE L2 2810 3039 -233 1943 89 78 0 chr6 7274923 7275204 -182004350 + AluSp SINE Alu 1 303 -10 1552 118 4 0 chr6 7275204 7275432 -182004122 + AluSg/x SINE Alu 80 309 -1 2159 118 3 0 chr6 7275463 7275769 -182003785 + AluSx SINE Alu 2 308 -4 22 0 0 0 chr6 7275805 7275827 -182003727 + AT_rich Low_complexity Low_complexity 1 22 0 40 49 0 0 chr6 7275882 7275943 -182003611 + AT_rich Low_complexity Low_complexity 1 61 0 301 235 37 99 chr6 7275943 7276105 -182003449 + L1MCa LINE L1 1941 2092 -4334 743 81 24 16 chr6 7276250 7276373 -182003181 - L1MB8 LINE L1 -9 6169 6046 899 209 0 0 chr6 7276388 7276541 -182003013 - FRAM SINE Alu -13 153 1 1248 138 4 43 chr6 7276545 7276776 -182002778 - AluSc SINE Alu -4 305 84 1868 116 56 3 chr6 7276776 7277061 -182002493 - AluSq SINE Alu -13 300 1 200 180 34 22 chr6 7277116 7277205 -182002349 + GA-rich Low_complexity Low_complexity 4 93 0 3962 138 14 2 chr6 7277220 7277843 -182001711 - L1MB7 LINE L1 -129 6055 5425 1678 189 3 0 chr6 7277955 7278261 -182001293 + AluJo SINE Alu 1 307 -5 22 0 0 0 chr6 7279164 7279186 -182000368 + GC_rich Low_complexity Low_complexity 1 22 0 922 199 8 34 chr6 7280285 7280552 -181999002 - AluSq SINE Alu -27 286 27 30 45 0 0 chr6 7280801 7280845 -181998709 + GC_rich Low_complexity Low_complexity 1 44 0 204 263 0 0 chr6 7280958 7281015 -181998539 + G-rich Low_complexity Low_complexity 6 62 0 255 61 0 0 chr6 7281476 7281509 -181998045 + (TCC)n Simple_repeat Simple_repeat 1 33 0 29 60 0 0 chr6 7281962 7282012 -181997542 + GC_rich Low_complexity Low_complexity 1 50 0 28 29 0 0 chr6 7282243 7282278 -181997276 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 7282444 7282466 -181997088 + GC_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr6 7283639 7283673 -181995881 + (TG)n Simple_repeat Simple_repeat 2 35 0 231 244 0 0 chr6 7284316 7284361 -181995193 - L2 LINE L2 -10 3262 3218 21 0 0 0 chr6 7285297 7285318 -181994236 + AT_rich Low_complexity Low_complexity 1 21 0 184 194 0 0 chr6 7287041 7287072 -181992482 + MIR SINE MIR 159 189 -73 1264 138 10 0 chr6 7287310 7287506 -181992048 - AluSg/x SINE Alu -29 283 86 662 181 132 64 chr6 7287562 7287766 -181991788 + MER20 DNA MER1_type 2 219 0 289 369 114 29 chr6 7288857 7289453 -181990101 + L2 LINE L2 2258 2904 -410 2261 78 16 16 chr6 7290565 7290874 -181988680 - AluSq SINE Alu 0 313 5 675 159 0 103 chr6 7290907 7291052 -181988502 - FLAM_C SINE Alu -2 131 2 25 31 0 0 chr6 7291136 7291168 -181988386 + AT_rich Low_complexity Low_complexity 1 32 0 2093 124 0 0 chr6 7291291 7291590 -181987964 - AluSx SINE Alu -13 299 1 888 154 0 0 chr6 7291975 7292118 -181987436 - FLAM_C SINE Alu 0 143 1 1564 114 146 4 chr6 7292279 7292533 -181987021 + AluSg1 SINE Alu 4 293 -16 321 236 194 36 chr6 7292628 7292793 -181986761 - L2 LINE L2 -211 3061 2871 1721 164 0 10 chr6 7293338 7293637 -181985917 + AluJb SINE Alu 1 296 -16 1614 134 91 14 chr6 7293845 7293983 -181985571 - AluJb SINE Alu -16 296 170 2171 107 0 13 chr6 7293983 7294293 -181985261 - AluSx SINE Alu -6 306 1 1614 134 91 14 chr6 7294293 7294429 -181985125 - AluJb SINE Alu -142 170 1 217 351 69 30 chr6 7294828 7294959 -181984595 - L3 LINE CR1 -89 1488 1353 1924 150 0 7 chr6 7295429 7295735 -181983819 - AluJb SINE Alu -8 304 1 1967 117 3 17 chr6 7296332 7296631 -181982923 - AluSx SINE Alu -17 295 1 2410 60 0 3 chr6 7296780 7297080 -181982474 - AluY SINE Alu -12 299 1 600 258 39 57 chr6 7297870 7298099 -181981455 - MIR SINE MIR -1 261 37 2278 64 0 0 chr6 7299152 7299469 -181980085 - AluSg SINE Alu 0 317 1 1627 115 78 0 chr6 7299489 7299732 -181979822 - AluSq SINE Alu -45 268 7 376 224 84 28 chr6 7301637 7301744 -181977810 - MIR SINE MIR -76 186 74 2153 103 0 0 chr6 7301856 7302147 -181977407 + AluSx SINE Alu 1 291 -21 2051 134 0 0 chr6 7303786 7304084 -181975470 - AluSg SINE Alu -12 298 1 2291 54 40 0 chr6 7304099 7304395 -181975159 - AluY SINE Alu -3 308 1 371 269 67 8 chr6 7304430 7304549 -181975005 - MIR SINE MIR -32 230 105 580 227 74 23 chr6 7304607 7304783 -181974771 - MIR SINE MIR -62 200 16 525 134 12 0 chr6 7304848 7304930 -181974624 - AluJ/FLAM SINE Alu -228 84 2 1538 167 20 33 chr6 7305033 7305221 -181974333 - AluSx SINE Alu -16 296 112 2185 112 0 0 chr6 7305221 7305524 -181974030 - AluSq SINE Alu -10 303 1 1538 167 20 33 chr6 7305524 7305635 -181973919 - AluSx SINE Alu -200 112 1 496 188 0 0 chr6 7305656 7305741 -181973813 + L2 LINE L2 3229 3313 0 298 216 9 117 chr6 7306269 7306380 -181973174 - MIR3 SINE MIR -6 202 104 681 197 0 0 chr6 7306610 7306727 -181972827 + FLAM_A SINE Alu 1 117 -16 189 107 0 0 chr6 7306727 7306755 -181972799 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 243 290 42 53 chr6 7306941 7307203 -181972351 - L1ME4a LINE L1 -65 6056 5798 759 183 0 22 chr6 7309607 7309744 -181969810 - FLAM_C SINE Alu -8 135 2 25 31 0 0 chr6 7314387 7314419 -181965135 + GC_rich Low_complexity Low_complexity 1 32 0 2209 65 0 20 chr6 7315112 7315404 -181964150 + AluSq SINE Alu 14 299 -14 237 65 0 0 chr6 7317009 7317040 -181962514 + (T)n Simple_repeat Simple_repeat 1 31 0 664 144 79 0 chr6 7317382 7317521 -181962033 + L1MA7 LINE L1 6133 6282 -9 189 107 0 0 chr6 7319136 7319164 -181960390 + (TC)n Simple_repeat Simple_repeat 2 29 0 198 71 0 0 chr6 7319270 7319298 -181960256 + (CA)n Simple_repeat Simple_repeat 2 29 0 407 231 28 0 chr6 7321558 7321666 -181957888 + L1MD2 LINE L1 6249 6359 0 2176 106 0 0 chr6 7322100 7322392 -181957162 - AluSx SINE Alu -20 292 1 229 175 0 0 chr6 7322635 7322675 -181956879 - L3b LINE CR1 -3 1580 1541 2278 76 0 7 chr6 7322856 7323158 -181956396 - AluSx SINE Alu -12 300 1 189 0 0 0 chr6 7326275 7326296 -181953258 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr6 7326402 7326423 -181953131 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr6 7326583 7326614 -181952940 + (CA)n Simple_repeat Simple_repeat 2 32 0 509 274 37 93 chr6 7326892 7327246 -181952308 - MLT1I LTR MaLR -6 403 70 1084 138 69 0 chr6 7327382 7327556 -181951998 + MER5A DNA MER1_type 4 189 0 740 256 55 47 chr6 7327676 7327930 -181951624 - MIR SINE MIR -1 261 6 2041 122 0 13 chr6 7328469 7328780 -181950774 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 7328949 7328971 -181950583 + AT_rich Low_complexity Low_complexity 1 22 0 1957 124 0 7 chr6 7330319 7330617 -181948937 + AluSx SINE Alu 1 296 -16 185 139 0 28 chr6 7330617 7330644 -181948910 - L2 LINE L2 -22 3291 3264 1483 159 52 38 chr6 7330658 7330948 -181948606 + AluJb SINE Alu 1 294 -18 229 267 0 0 chr6 7333183 7333228 -181946326 - L2 LINE L2 -27 3286 3242 400 162 0 81 chr6 7333279 7333378 -181946176 - AluJ/FRAM SINE Alu -4 308 218 378 104 5 19 chr6 7333394 7333453 -181946101 - FLAM SINE Alu -11 122 71 21 71 0 0 chr6 7333474 7333516 -181946038 + AT_rich Low_complexity Low_complexity 1 42 0 1662 157 0 52 chr6 7333689 7333847 -181945707 - AluJb SINE Alu -22 290 154 2252 98 3 0 chr6 7333847 7334153 -181945401 - AluSc SINE Alu -2 307 1 1662 157 0 52 chr6 7334153 7334300 -181945254 - AluJb SINE Alu -158 154 1 229 0 54 27 chr6 7335989 7336026 -181943528 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 908 149 0 7 chr6 7336030 7336178 -181943376 - AluJb SINE Alu -24 288 142 2345 77 0 10 chr6 7336550 7336862 -181942692 - AluY SINE Alu -1 310 2 21 0 0 0 chr6 7340473 7340494 -181939060 + AT_rich Low_complexity Low_complexity 1 21 0 1992 82 85 4 chr6 7340519 7340800 -181938754 - AluSq SINE Alu -9 304 1 213 304 0 0 chr6 7341030 7341086 -181938468 - MIR SINE MIR -96 166 111 2192 94 20 0 chr6 7341148 7341446 -181938108 + AluSx SINE Alu 1 304 -8 420 304 193 46 chr6 7341565 7341979 -181937575 - L3 LINE CR1 -2 1575 1101 262 293 82 24 chr6 7341985 7342171 -181937383 + MIR SINE MIR 11 255 -7 453 209 85 52 chr6 7344037 7344190 -181935364 - MER5A DNA MER1_type -3 186 29 392 250 98 38 chr6 7344692 7344824 -181934730 + MIR SINE MIR 64 203 -59 1639 179 3 0 chr6 7345117 7345414 -181934140 - AluJo SINE Alu -14 298 1 761 177 8 0 chr6 7345586 7345716 -181933838 - FLAM_C SINE Alu -1 132 2 1550 109 97 4 chr6 7346444 7346691 -181932863 + AluSx SINE Alu 42 311 -1 1171 118 129 86 chr6 7346704 7346983 -181932571 + AluSx SINE Alu 21 311 -1 192 125 0 0 chr6 7347650 7347682 -181931872 + (AAATG)n Simple_repeat Simple_repeat 4 35 0 1981 137 13 0 chr6 7347772 7348078 -181931476 - AluSx SINE Alu -2 310 1 189 0 0 0 chr6 7348078 7348099 -181931455 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1794 147 7 3 chr6 7349085 7349378 -181930176 - AluJb SINE Alu -10 302 9 2101 117 7 7 chr6 7350104 7350412 -181929142 + AluSx SINE Alu 1 308 -4 1561 149 16 68 chr6 7350711 7350882 -181928672 - AluJo SINE Alu -19 293 144 2039 139 7 0 chr6 7350882 7351192 -181928362 - AluSx SINE Alu 0 312 1 1561 149 16 68 chr6 7351192 7351329 -181928225 - AluJo SINE Alu -168 144 1 23 54 0 0 chr6 7351329 7351366 -181928188 + AT_rich Low_complexity Low_complexity 1 37 0 578 169 0 48 chr6 7352444 7352568 -181926986 - FLAM_A SINE Alu 0 142 25 21 36 0 0 chr6 7352966 7352994 -181926560 + AT_rich Low_complexity Low_complexity 1 28 0 762 168 0 8 chr6 7352994 7353119 -181926435 - FLAM_C SINE Alu -17 126 3 295 277 85 11 chr6 7356214 7356308 -181923246 - L1ME LINE L1 -519 5602 5502 203 286 0 0 chr6 7356363 7356412 -181923142 + CT-rich Low_complexity Low_complexity 4 52 0 246 343 20 10 chr6 7356544 7356643 -181922911 - L2 LINE L2 -7 3306 3207 671 177 23 23 chr6 7357239 7357369 -181922185 + FLAM_A SINE Alu 1 130 -3 213 65 0 0 chr6 7357432 7357463 -181922091 + (TTA)n Simple_repeat Simple_repeat 3 33 0 27 0 0 0 chr6 7357576 7357603 -181921951 + AT_rich Low_complexity Low_complexity 1 27 0 896 102 0 0 chr6 7357604 7357722 -181921832 - FLAM_C SINE Alu -19 124 7 2239 101 0 0 chr6 7358457 7358755 -181920799 + AluSx SINE Alu 1 298 -14 698 255 98 13 chr6 7358979 7359214 -181920340 + MIR SINE MIR 5 259 -3 273 224 19 118 chr6 7359482 7359643 -181919911 + MER5A DNA MER1_type 21 165 -24 575 281 49 0 chr6 7360310 7360474 -181919080 - MIR SINE MIR -8 254 83 450 0 0 0 chr6 7360710 7360760 -181918794 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 671 101 50 0 chr6 7360760 7360859 -181918695 - HY1 scRNA scRNA -8 104 1 23 33 0 0 chr6 7360936 7360966 -181918588 + AT_rich Low_complexity Low_complexity 1 30 0 1818 132 3 52 chr6 7361043 7361370 -181918184 + AluSx SINE Alu 1 311 -1 249 159 0 0 chr6 7361585 7361629 -181917925 + (TG)n Simple_repeat Simple_repeat 2 45 0 1340 102 0 11 chr6 7361629 7361816 -181917738 - AluSg/x SINE Alu -32 280 96 464 315 31 0 chr6 7363509 7363639 -181915915 + MIR SINE MIR 11 144 -118 267 274 115 0 chr6 7363684 7363797 -181915757 + MIR SINE MIR 137 262 0 231 254 17 0 chr6 7364601 7364660 -181914894 - L1MB8 LINE L1 -20 6158 6099 * 1314 180 15 15 chr6 7364646 7364913 -181914641 - L1MB8 LINE L1 -345 5833 5567 1941 212 172 7 chr6 7364916 7365482 -181914072 - L1MB8 LINE L1 -1573 4573 3897 180 0 0 0 chr6 7365482 7365502 -181914052 + (T)n Simple_repeat Simple_repeat 1 20 0 1941 212 172 7 chr6 7365502 7365548 -181914006 - L1MB8 LINE L1 -2249 3897 3860 1955 132 0 0 chr6 7365557 7365846 -181913708 - AluSx SINE Alu -18 294 6 1864 225 56 17 chr6 7365852 7366496 -181913058 - L1MB8 LINE L1 -2690 3456 2788 1204 193 8 4 chr6 7366510 7366749 -181912805 - L1MB8 LINE L1 -3317 2829 2590 275 273 322 0 chr6 7366773 7366894 -181912660 - MIR SINE MIR -91 171 12 1948 119 89 18 chr6 7366894 7366944 -181912610 - MER46B DNA MER2_type -2495 236 191 200 57 0 29 chr6 7366944 7366979 -181912575 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1948 119 89 18 chr6 7366979 7367265 -181912289 - MER46B DNA MER2_type -2540 191 1 21 0 0 0 chr6 7367596 7367617 -181911937 + AT_rich Low_complexity Low_complexity 1 21 0 1702 149 0 4 chr6 7367626 7367894 -181911660 + AluSx SINE Alu 1 267 -45 700 272 49 0 chr6 7368232 7368416 -181911138 + MIR SINE MIR 70 262 0 279 104 0 0 chr6 7369557 7369605 -181909949 + (T)n Simple_repeat Simple_repeat 1 48 0 30 27 0 0 chr6 7370054 7370091 -181909463 + AT_rich Low_complexity Low_complexity 1 37 0 1386 162 79 0 chr6 7370791 7371032 -181908522 + AluSx SINE Alu 31 290 -22 276 273 165 8 chr6 7372580 7372701 -181906853 + MIR SINE MIR 117 256 -6 1006 150 0 0 chr6 7373016 7373201 -181906353 - AluJb SINE Alu 0 306 122 315 152 0 0 chr6 7373538 7373584 -181905970 + L1MC4 LINE L1 6658 6703 -1339 396 59 0 0 chr6 7373589 7373640 -181905914 + (TG)n Simple_repeat Simple_repeat 2 52 0 1989 105 59 0 chr6 7373641 7373927 -181905627 - AluSq SINE Alu -10 303 1 286 343 29 25 chr6 7375899 7376138 -181903416 + L3 LINE CR1 1043 1282 -295 557 196 10 0 chr6 7376632 7376729 -181902825 + FRAM SINE Alu 63 160 -16 637 256 18 0 chr6 7378506 7378674 -181900880 - MER5A DNA MER1_type -3 186 16 260 352 22 0 chr6 7378707 7378798 -181900756 - MIR SINE MIR -112 150 58 498 291 131 51 chr6 7379859 7380474 -181899080 - L2 LINE L2 -8 3305 2621 369 355 35 43 chr6 7380534 7380790 -181898764 - L1MC/D LINE L1 -2109 5699 5446 824 320 157 36 chr6 7380795 7381439 -181898115 + L3 LINE CR1 851 1572 -5 297 259 134 21 chr6 7382246 7382401 -181897153 + MIR SINE MIR 2 181 -27 549 198 0 0 chr6 7382922 7383028 -181896526 - AluJo/FRAM SINE Alu -2 310 205 448 118 0 0 chr6 7383027 7383095 -181896459 + AluS SINE Alu 226 293 -18 * 251 233 62 144 chr6 7384552 7384663 -181894891 + L2 LINE L2 3180 3278 -35 624 81 0 0 chr6 7384663 7384750 -181894804 + (TGGA)n Simple_repeat Simple_repeat 1 87 0 251 233 62 144 chr6 7384750 7384784 -181894770 + L2 LINE L2 3278 3313 0 211 286 165 30 chr6 7386366 7386499 -181893055 + MIR3 SINE MIR 24 174 -34 1952 133 3 16 chr6 7386509 7386825 -181892729 - AluSx SINE Alu 0 312 1 186 43 0 0 chr6 7388693 7388716 -181890838 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 1536 179 4 14 chr6 7388718 7388998 -181890556 - AluJb SINE Alu -35 277 1 608 258 47 39 chr6 7388998 7389231 -181890323 - MER33 DNA MER1_type -53 271 37 192 321 49 12 chr6 7389457 7389538 -181890016 - L2 LINE L2 -4 3268 3185 215 254 32 16 chr6 7440752 7440815 -181838739 + CT-rich Low_complexity Low_complexity 5 68 0 2161 110 0 3 chr6 7445338 7445638 -181833916 + AluSx SINE Alu 1 299 -13 799 144 0 0 chr6 7445649 7445767 -181833787 + FLAM_C SINE Alu 1 118 -15 2249 84 7 0 chr6 7446472 7446769 -181832785 + AluSq SINE Alu 1 299 -14 228 277 15 15 chr6 7448837 7448902 -181830652 + MIR SINE MIR 111 175 -87 381 22 0 0 chr6 7450417 7450463 -181829091 + (GA)n Simple_repeat Simple_repeat 1 46 0 282 29 0 0 chr6 7451149 7451184 -181828370 + (TTA)n Simple_repeat Simple_repeat 1 35 0 318 153 0 0 chr6 7452326 7452385 -181827169 + (TTA)n Simple_repeat Simple_repeat 2 60 0 237 65 0 0 chr6 7452840 7452871 -181826683 + (T)n Simple_repeat Simple_repeat 1 31 0 1545 175 0 15 chr6 7453505 7453779 -181825775 + AluJo SINE Alu 9 278 -34 2251 82 3 0 chr6 7454237 7454528 -181825026 + AluY SINE Alu 1 292 -19 2081 103 10 3 chr6 7454533 7454835 -181824719 + AluSx SINE Alu 1 304 -8 433 274 117 11 chr6 7455162 7455341 -181824213 + MIR SINE MIR 13 210 -52 305 172 17 0 chr6 7455756 7455814 -181823740 + MER5A DNA MER1_type 9 67 -122 841 152 48 48 chr6 7455829 7455994 -181823560 + FRAM SINE Alu 2 166 0 181 247 278 10 chr6 7455998 7456095 -181823459 + MER5A DNA MER1_type 61 183 -6 339 179 328 22 chr6 7457391 7457525 -181822029 - MLT1G LTR MaLR 0 590 416 274 296 49 45 chr6 7457590 7457630 -181821924 + MER5A DNA MER1_type 29 67 -122 2190 114 0 0 chr6 7457630 7457929 -181821625 + AluSq SINE Alu 1 299 -14 274 296 49 45 chr6 7457929 7458038 -181821516 + MER5A DNA MER1_type 67 186 -3 1655 162 4 22 chr6 7458454 7458732 -181820822 - AluSx SINE Alu -35 277 5 1897 129 13 13 chr6 7458744 7459055 -181820499 - AluJb SINE Alu -1 311 1 841 239 112 15 chr6 7459174 7459442 -181820112 - MER45C DNA AcHobo -659 294 1 195 100 0 0 chr6 7460269 7460299 -181819255 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 841 169 15 0 chr6 7461108 7461238 -181818316 + FLAM_A SINE Alu 1 132 -1 660 210 0 8 chr6 7461520 7461639 -181817915 + FLAM_C SINE Alu 2 119 -24 180 0 0 0 chr6 7461640 7461660 -181817894 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 2122 114 0 3 chr6 7464001 7464298 -181815256 - AluSq SINE Alu -17 296 1 2153 83 43 0 chr6 7464824 7465124 -181814430 - AluSp SINE Alu 0 313 1 188 67 33 0 chr6 7465135 7465165 -181814389 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2306 99 0 3 chr6 7465169 7465483 -181814071 - AluSq SINE Alu 0 313 1 1253 215 115 6 chr6 7466057 7466387 -181813167 + MLT1B LTR MaLR 9 374 -16 2024 139 0 0 chr6 7466723 7467026 -181812528 - AluSx SINE Alu -7 305 3 180 219 14 110 chr6 7467339 7467412 -181812142 + L3 LINE CR1 1493 1558 -19 892 274 161 11 chr6 7467495 7467949 -181811605 + LTR41 LTR ERVL 1 564 -209 540 90 0 26 chr6 7467982 7468060 -181811494 - Alu SINE Alu -9 301 226 369 229 57 57 chr6 7468061 7468201 -181811353 + LTR41 LTR ERVL 620 759 -14 536 243 77 0 chr6 7468874 7469043 -181810511 + MER5A DNA MER1_type 7 188 -1 188 244 13 39 chr6 7469156 7469234 -181810320 - MER5A DNA MER1_type -26 163 88 216 278 0 0 chr6 7469676 7469730 -181809824 + (CAATT)n Simple_repeat Simple_repeat 4 57 0 299 214 137 34 chr6 7470989 7471106 -181808448 - L2 LINE L2 -1 3312 3184 1906 246 79 35 chr6 7471267 7471710 -181807844 + L1MC4 LINE L1 7348 7829 -213 2402 73 17 0 chr6 7471710 7472010 -181807544 + AluSp SINE Alu 1 305 -8 1906 246 79 35 chr6 7472010 7472215 -181807339 + L1MC4 LINE L1 7829 8024 -18 2320 103 0 3 chr6 7472753 7473054 -181806500 + AluSp SINE Alu 1 300 -13 267 291 145 0 chr6 7473161 7473278 -181806276 + MIR SINE MIR 33 166 -96 196 186 0 0 chr6 7475343 7475386 -181804168 - MER5A DNA MER1_type -34 155 113 * 213 236 101 34 chr6 7475352 7475441 -181804113 + MER5A DNA MER1_type 54 148 -41 657 0 80 0 chr6 7475677 7475790 -181803764 + (TA)n Simple_repeat Simple_repeat 2 123 0 2265 82 21 0 chr6 7475790 7476072 -181803482 - AluSg SINE Alu -22 288 1 456 273 258 22 chr6 7476152 7476419 -181803135 + L3 LINE CR1 1235 1564 -13 324 250 73 0 chr6 7476672 7476768 -181802786 - MIR SINE MIR -108 154 52 903 101 0 81 chr6 7476809 7476958 -181802596 - AluJo SINE Alu -175 137 1 1730 149 0 30 chr6 7477659 7477954 -181801600 + AluSx SINE Alu 3 288 -24 2501 51 0 0 chr6 7477964 7478256 -181801298 + AluY SINE Alu 1 292 -19 1219 113 0 0 chr6 7478259 7478449 -181801105 + AluSg/x SINE Alu 125 314 0 723 128 9 0 chr6 7478515 7478624 -181800930 - FLAM_C SINE Alu -32 111 2 2207 137 0 0 chr6 7478637 7478944 -181800610 - AluSx SINE Alu -5 307 1 383 218 119 10 chr6 7479451 7479552 -181800002 + MIR SINE MIR 61 172 -90 192 245 153 61 chr6 7479553 7479651 -181799903 - L2 LINE L2 -13 3300 3194 288 0 0 0 chr6 7479689 7479721 -181799833 + (TG)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chr6 7479720 7479749 -181799805 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 2157 88 11 14 chr6 7479776 7480059 -181799495 - AluSx SINE Alu -30 282 1 2547 63 0 0 chr6 7480592 7480894 -181798660 + AluY SINE Alu 1 302 -9 2260 110 3 0 chr6 7480907 7481206 -181798348 + AluSx SINE Alu 1 300 -12 227 206 137 0 chr6 7481398 7481471 -181798083 - L1ME4a LINE L1 -70 6051 5969 2244 92 35 0 chr6 7482069 7482351 -181797203 - AluSg SINE Alu -18 292 1 22 0 0 0 chr6 7484400 7484422 -181795132 + AT_rich Low_complexity Low_complexity 1 22 0 2146 100 7 17 chr6 7484455 7484611 -181794943 - AluSx SINE Alu -24 288 135 2287 114 0 0 chr6 7484611 7484908 -181794646 - AluSx SINE Alu -15 297 1 2146 100 7 17 chr6 7484908 7485042 -181794512 - AluSx SINE Alu -177 135 1 200 205 384 13 chr6 7485914 7486065 -181793489 - MIR SINE MIR -18 244 38 1951 146 6 16 chr6 7486755 7487070 -181792484 + AluSx SINE Alu 1 312 0 213 329 95 25 chr6 7487376 7487534 -181792020 + MIR SINE MIR 82 250 -12 2157 90 10 29 chr6 7487989 7488300 -181791254 + AluSx SINE Alu 1 305 -7 1024 128 60 0 chr6 7492261 7492410 -181787144 - AluSg/x SINE Alu -18 292 135 2067 125 3 23 chr6 7492473 7492776 -181786778 + AluSx SINE Alu 1 297 -15 2006 140 14 3 chr6 7493151 7493444 -181786110 + AluJb SINE Alu 1 296 -16 210 301 174 36 chr6 7493456 7493898 -181785656 + L2 LINE L2 2196 2698 -616 749 194 0 8 chr6 7493912 7494046 -181785508 - FLAM_A SINE Alu 0 133 1 549 241 30 60 chr6 7494368 7494534 -181785020 + MER8 DNA MER2_type 1 161 -78 22 35 0 0 chr6 7494535 7494564 -181784990 + AT_rich Low_complexity Low_complexity 1 29 0 1431 108 19 0 chr6 7494567 7494780 -181784774 - L1PB2 LINE L1 -5 6146 5930 1459 163 106 4 chr6 7494811 7495075 -181784479 - AluJb SINE Alu -21 291 1 366 134 15 30 chr6 7495143 7495210 -181784344 - Tigger2 DNA MER2_type -2651 67 2 359 349 11 37 chr6 7495448 7495637 -181783917 + L1MC4a LINE L1 5682 5865 -1943 2212 88 0 11 chr6 7495767 7496081 -181783473 + AluSx SINE Alu 1 311 0 695 183 9 0 chr6 7496914 7497029 -181782525 - FLAM_A SINE Alu -17 116 1 345 264 0 58 chr6 7498007 7498128 -181781426 + G-rich Low_complexity Low_complexity 2 115 0 1854 166 13 0 chr6 7498300 7498601 -181780953 + AluJb SINE Alu 1 305 -7 1777 180 3 10 chr6 7498805 7499105 -181780449 + AluJo SINE Alu 1 298 -14 609 183 8 32 chr6 7500387 7500513 -181779041 + FLAM_A SINE Alu 1 123 -10 1961 118 38 3 chr6 7500779 7501066 -181778488 + AluSp SINE Alu 2 298 -15 240 333 61 25 chr6 7501486 7501684 -181777870 + L3b LINE CR1 1266 1470 -113 2370 98 0 0 chr6 7502007 7502303 -181777251 - AluSx SINE Alu -15 297 2 323 313 46 30 chr6 7502996 7503127 -181776427 - MER117 DNA MER1_type -57 140 8 2233 111 7 0 chr6 7503845 7504143 -181775411 + AluSc SINE Alu 1 300 -9 2352 84 7 13 chr6 7504218 7504526 -181775028 + AluSg SINE Alu 1 306 -4 767 142 0 0 chr6 7504578 7504698 -181774856 + AluSg/x SINE Alu 171 290 -20 1823 107 103 4 chr6 7505070 7505341 -181774213 + AluSx SINE Alu 1 298 -14 263 308 55 0 chr6 7505497 7505588 -181773966 - MER5A DNA MER1_type -84 105 10 696 204 27 34 chr6 7505605 7505752 -181773802 - MER58B DNA MER1_type 0 341 196 265 233 167 0 chr6 7505940 7506030 -181773524 + L1MB7 LINE L1 6079 6183 -1 225 215 77 0 chr6 7507010 7507075 -181772479 - L2 LINE L2 -1757 1557 1488 2278 75 0 52 chr6 7507497 7507804 -181771750 - AluY SINE Alu -20 291 1 2402 53 0 4 chr6 7507996 7508277 -181771277 + AluY SINE Alu 1 280 -31 1598 155 62 0 chr6 7508912 7509170 -181770384 - AluJo SINE Alu -21 291 18 218 218 95 129 chr6 7510036 7510183 -181769371 + L2 LINE L2 3136 3277 -36 1938 137 0 23 chr6 7510534 7510833 -181768721 + AluJo SINE Alu 1 292 -20 2646 94 16 11 chr6 7510862 7511235 -181768319 + THE1C LTR MaLR 1 375 0 966 174 0 18 chr6 7511586 7511753 -181767801 - FRAM SINE Alu -2 164 1 2159 131 3 0 chr6 7511991 7512297 -181767257 + AluSx SINE Alu 1 307 -5 23 33 0 0 chr6 7513028 7513058 -181766496 + AT_rich Low_complexity Low_complexity 1 30 0 2187 104 0 3 chr6 7515031 7515319 -181764235 - AluSx SINE Alu -25 287 1 494 256 128 10 chr6 7515570 7515765 -181763789 - MIR SINE MIR -24 238 21 2182 91 144 6 chr6 7516062 7516403 -181763151 - pTR5 LTR ERV1 -2046 392 5 1209 181 19 39 chr6 7516400 7516966 -181762588 + pTR5 LTR ERV1 743 1346 -1092 * 2537 185 209 41 chr6 7516979 7517683 -181761871 + LTR12 LTR ERV1 4 825 -1 3917 152 190 40 chr6 7517683 7518642 -181760912 - pTR5 LTR ERV1 -404 1756 31 2231 107 0 17 chr6 7519758 7520056 -181759498 - AluSx SINE Alu -19 293 1 458 268 159 22 chr6 7520057 7520333 -181759221 + L2 LINE L2 2999 3312 -1 204 40 0 0 chr6 7520495 7520520 -181759034 + (A)n Simple_repeat Simple_repeat 1 25 0 615 308 147 22 chr6 7520731 7520779 -181758775 + L2 LINE L2 1445 1486 -1828 2056 123 17 3 chr6 7520779 7521072 -181758482 - AluJo SINE Alu -5 307 11 615 308 147 22 chr6 7521072 7521439 -181758115 + L2 LINE L2 1486 1912 -1402 807 273 73 57 chr6 7521556 7521580 -181757974 + HERV16 LTR ERVL 1165 1187 -3809 1067 220 125 32 chr6 7521580 7521795 -181757759 - MER2 DNA MER2_type -2 342 88 2424 68 0 0 chr6 7521795 7522087 -181757467 - AluY SINE Alu -19 292 1 1067 220 125 32 chr6 7522087 7522184 -181757370 - MER2 DNA MER2_type -256 88 1 807 273 73 57 chr6 7522184 7522600 -181756954 + HERV16 LTR ERVL 1187 1595 -3401 2453 92 0 0 chr6 7522600 7522906 -181756648 + AluSc SINE Alu 1 306 -3 807 273 73 57 chr6 7522906 7522959 -181756595 + HERV16 LTR ERVL 1595 1646 -3350 1058 171 89 131 chr6 7522959 7523122 -181756432 + MLT1A1 LTR MaLR 1 169 -196 2205 135 0 0 chr6 7523122 7523426 -181756128 - AluSx SINE Alu -8 304 1 1058 171 89 131 chr6 7523426 7523572 -181755982 + MLT1A1 LTR MaLR 169 294 -71 2441 82 0 0 chr6 7523572 7523875 -181755679 - AluSc SINE Alu -6 303 1 1058 171 89 131 chr6 7523875 7523945 -181755609 + MLT1A1 LTR MaLR 294 365 0 807 273 73 57 chr6 7523945 7524045 -181755509 + HERV16 LTR ERVL 1646 1833 -3163 353 270 43 26 chr6 7524154 7524269 -181755285 + HERV16 LTR ERVL 2334 2450 -2546 597 229 0 0 chr6 7524422 7524553 -181755001 + L1MB7 LINE L1 6039 6169 -15 181 231 116 33 chr6 7526198 7526319 -181753235 + L2 LINE L2 1554 1684 -1630 350 57 19 0 chr6 7526648 7526701 -181752853 + (TA)n Simple_repeat Simple_repeat 1 54 0 2266 111 0 13 chr6 7526702 7527008 -181752546 - AluSx SINE Alu -10 302 1 651 136 34 25 chr6 7527229 7527347 -181752207 - AluJo SINE Alu -18 294 176 438 171 48 19 chr6 7527373 7527478 -181752076 - AluJo SINE Alu -118 194 87 2508 65 0 7 chr6 7527479 7527786 -181751768 - AluY SINE Alu -6 305 1 2012 127 0 0 chr6 7528415 7528691 -181750863 - AluSx SINE Alu -13 299 24 647 143 107 0 chr6 7528691 7528803 -181750751 - AluSq/x SINE Alu -187 125 2 2340 75 4 0 chr6 7529010 7529291 -181750263 + AluSp SINE Alu 1 282 -31 270 0 0 0 chr6 7529294 7529324 -181750230 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1961 155 6 3 chr6 7529922 7530235 -181749319 + L1MA5 LINE L1 5950 6266 -34 414 0 0 0 chr6 7530235 7530281 -181749273 + (TG)n Simple_repeat Simple_repeat 2 47 0 2226 114 0 3 chr6 7530296 7530594 -181748960 - AluSx SINE Alu -15 297 1 233 152 43 0 chr6 7530594 7530640 -181748914 + L1MA6 LINE L1 6253 6300 0 659 345 26 7 chr6 7530702 7531006 -181748548 - L2 LINE L2 -452 2862 2553 2061 144 3 0 chr6 7531467 7531773 -181747781 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr6 7532275 7532303 -181747251 + AT_rich Low_complexity Low_complexity 1 28 0 2410 104 0 0 chr6 7534303 7534612 -181744942 - AluSq SINE Alu -4 309 1 297 51 0 0 chr6 7535000 7535039 -181744515 + (TA)n Simple_repeat Simple_repeat 2 40 0 2384 79 3 0 chr6 7535039 7535329 -181744225 - AluSx SINE Alu -21 291 1 21 0 0 0 chr6 7535351 7535372 -181744182 + AT_rich Low_complexity Low_complexity 1 21 0 2083 142 10 0 chr6 7535808 7536117 -181743437 + AluJb SINE Alu 1 312 0 1827 193 86 29 chr6 7536224 7536702 -181742852 - MLT1D LTR MaLR 0 505 1 694 194 49 170 chr6 7536740 7536959 -181742595 - MER102a DNA MER1_type -1087 330 179 1786 161 18 7 chr6 7536959 7537238 -181742316 - AluJo SINE Alu -30 282 1 694 194 49 170 chr6 7537238 7537390 -181742164 - MER102a DNA MER1_type -1238 179 10 4902 207 98 16 chr6 7537837 7537869 -181741685 - L1MC/D LINE L1 -758 5388 5360 1998 162 0 0 chr6 7537869 7538171 -181741383 - AluSx SINE Alu -10 302 1 4902 207 98 16 chr6 7538171 7538402 -181741152 - L1MC/D LINE L1 -786 5360 5149 2379 84 7 19 chr6 7538402 7538711 -181740843 + AluSg SINE Alu 1 305 -5 4902 207 98 16 chr6 7538711 7539912 -181739642 - L1MC/D LINE L1 -997 5149 3843 322 173 39 0 chr6 7539940 7539992 -181739562 - MLT1D LTR MaLR -418 87 34 647 92 11 0 chr6 7540021 7540132 -181739422 - L1PB1 LINE L1 -100 6051 5940 5430 91 8 2 chr6 7540960 7541802 -181737752 - L1PB1 LINE L1 -178 5973 5128 1212 219 0 7 chr6 7544033 7544321 -181735233 - L1PB1 LINE L1 -1018 5128 4843 1701 97 0 9 chr6 7544352 7544579 -181734975 + AluSg/x SINE Alu 87 311 -1 4503 160 132 45 chr6 7545386 7546836 -181732718 + pTR5 LTR ERV1 730 2438 0 2153 106 14 7 chr6 7547007 7547299 -181732255 + AluY SINE Alu 1 294 -17 466 88 15 0 chr6 7547448 7547516 -181732038 - MER41B LTR ERV1 -86 549 481 1876 152 21 0 chr6 7547634 7547923 -181731631 + AluJo SINE Alu 1 295 -17 1846 166 0 34 chr6 7547926 7548246 -181731308 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr6 7548395 7548424 -181731130 + AT_rich Low_complexity Low_complexity 1 29 0 13115 186 26 33 chr6 7548438 7551012 -181728542 + L1PB1 LINE L1 6 2596 -4300 2172 125 6 3 chr6 7551012 7551324 -181728230 + AluSq SINE Alu 1 313 0 13115 186 26 33 chr6 7551324 7552880 -181726674 + L1PB1 LINE L1 2596 4161 -2735 209 81 0 27 chr6 7552880 7552917 -181726637 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 13115 186 26 33 chr6 7552917 7555058 -181724496 + L1PB1 LINE L1 4161 6511 -385 414 0 0 0 chr6 7555058 7555104 -181724450 + (CA)n Simple_repeat Simple_repeat 2 47 0 13115 186 26 33 chr6 7555104 7555488 -181724066 + L1PB1 LINE L1 6511 6896 0 32 26 0 0 chr6 7555523 7555562 -181723992 + AT_rich Low_complexity Low_complexity 1 39 0 1680 174 24 7 chr6 7557081 7557379 -181722175 + AluJo SINE Alu 1 303 -9 2274 96 13 3 chr6 7558157 7558459 -181721095 - AluSx SINE Alu -7 305 1 234 257 11 140 chr6 7559061 7559146 -181720408 - L1MA10 LINE L1 -4 6330 6236 1563 129 0 0 chr6 7559146 7559370 -181720184 - AluSg/x SINE Alu -3 307 84 234 257 11 140 chr6 7559370 7559389 -181720165 - L1MA10 LINE L1 -98 6236 6216 396 0 0 0 chr6 7559389 7559433 -181720121 + (TA)n Simple_repeat Simple_repeat 2 45 0 2587 182 29 76 chr6 7559441 7559920 -181719634 - L1ME1 LINE L1 -92 6074 5574 1285 167 114 43 chr6 7559920 7560201 -181719353 + AluJo SINE Alu 1 301 -11 2587 182 29 76 chr6 7560201 7560413 -181719141 - L1ME1 LINE L1 -592 5574 5416 2325 92 3 3 chr6 7560413 7560708 -181718846 - AluSq SINE Alu -18 295 1 2587 182 29 76 chr6 7560708 7560740 -181718814 - L1ME1 LINE L1 -750 5416 5384 2080 168 104 28 chr6 7561195 7561664 -181717890 - MLT1D LTR MaLR 0 505 1 2195 109 0 10 chr6 7562023 7562326 -181717228 + AluSx SINE Alu 1 300 -12 772 222 144 92 chr6 7564090 7564343 -181715211 - L1MC5 LINE L1 -1 7960 7722 1967 131 3 20 chr6 7564343 7564648 -181714906 + AluSx SINE Alu 1 300 -12 772 222 144 92 chr6 7564648 7565060 -181714494 - L1MC5 LINE L1 -239 7722 7260 571 220 30 18 chr6 7565192 7565360 -181714194 - L1MC5 LINE L1 -733 7228 7059 2290 108 0 3 chr6 7565824 7566129 -181713425 - AluSg SINE Alu -6 304 1 21 0 0 0 chr6 7567297 7567318 -181712236 + AT_rich Low_complexity Low_complexity 1 21 0 2346 103 0 0 chr6 7567325 7567626 -181711928 + AluSx SINE Alu 1 301 -11 2407 215 75 2 chr6 7567686 7568203 -181711351 + MER68 LTR ERV1 1 555 -7 368 267 68 19 chr6 7568376 7568582 -181710972 - L1MC5 LINE L1 -22 7939 7724 214 178 0 0 chr6 7568640 7568685 -181710869 + T-rich Low_complexity Low_complexity 1 45 0 1482 148 4 4 chr6 7568707 7568936 -181710618 - AluJb SINE Alu -83 229 1 2206 96 0 60 chr6 7569314 7569646 -181709908 + AluSx SINE Alu 1 312 0 2424 77 6 6 chr6 7570357 7570669 -181708885 - AluSq SINE Alu -1 312 1 403 235 71 0 chr6 7570732 7570830 -181708724 - MIR SINE MIR -109 153 49 1594 138 14 86 chr6 7571530 7571653 -181707901 - Charlie1b DNA MER1_type -2241 520 390 1647 172 11 11 chr6 7571653 7571952 -181707602 - AluJo SINE Alu 0 304 6 1594 138 14 86 chr6 7571952 7572250 -181707304 - Charlie1b DNA MER1_type -2371 390 53 1186 148 28 0 chr6 7572477 7572659 -181706895 + MER5A DNA MER1_type 3 189 0 2207 107 0 22 chr6 7572862 7573180 -181706374 + AluSx SINE Alu 1 311 -1 2276 101 10 0 chr6 7573551 7573847 -181705707 + AluSx SINE Alu 1 299 -13 1718 168 0 31 chr6 7574020 7574312 -181705242 - AluJo SINE Alu -2 310 28 2150 134 0 13 chr6 7576109 7576423 -181703131 + AluSx SINE Alu 1 310 -2 2369 100 0 3 chr6 7576490 7576800 -181702754 + AluSc SINE Alu 1 309 0 1325 192 91 25 chr6 7576816 7577102 -181702452 + AluJb SINE Alu 1 305 -7 524 292 35 59 chr6 7577185 7577292 -181702262 + L2 LINE L2 2722 2830 -442 1577 194 96 72 chr6 7577292 7577469 -181702085 + MSTD LTR MaLR 1 172 -224 2104 110 0 0 chr6 7577469 7577798 -181701756 + AluY SINE Alu 1 329 0 1577 194 96 72 chr6 7577798 7578006 -181701548 + MSTD LTR MaLR 172 396 0 524 292 35 59 chr6 7578006 7578290 -181701264 + L2 LINE L2 2830 3091 -181 433 275 19 50 chr6 7578447 7578607 -181700947 + L2 LINE L2 3158 3312 -1 2007 129 26 13 chr6 7578822 7579124 -181700430 + AluSg SINE Alu 1 306 -4 368 164 0 0 chr6 7579490 7579551 -181700003 + MER41A LTR ERV1 400 460 -94 24 32 0 0 chr6 7579811 7579842 -181699712 + AT_rich Low_complexity Low_complexity 1 31 0 682 228 7 13 chr6 7580740 7580889 -181698665 - MIR SINE MIR -59 203 56 2011 212 98 4 chr6 7581149 7581626 -181697928 - MER119 DNA MER1_type -3 580 59 2287 103 0 0 chr6 7581720 7582012 -181697542 + AluSx SINE Alu 5 296 -16 694 245 165 64 chr6 7582067 7582473 -181697081 - L1ME LINE L1 -354 5808 5444 2301 137 23 35 chr6 7582473 7582868 -181696686 + MLT1B LTR MaLR 1 390 0 694 245 165 64 chr6 7582868 7582898 -181696656 - L1ME LINE L1 -718 5444 5418 2231 103 14 0 chr6 7582898 7583190 -181696364 - AluSx SINE Alu -16 296 1 694 245 165 64 chr6 7583190 7583203 -181696351 - L1ME LINE L1 -744 5418 5408 2349 81 7 0 chr6 7583203 7583499 -181696055 - AluY SINE Alu -13 298 1 694 245 165 64 chr6 7583499 7583546 -181696008 - L1ME LINE L1 -754 5408 5257 2205 97 3 3 chr6 7583674 7583962 -181695592 - AluSg SINE Alu -22 288 1 1633 137 15 8 chr6 7584102 7584365 -181695189 + AluSg SINE Alu 37 301 -9 1911 140 74 37 chr6 7584390 7584741 -181694813 + THE1B LTR MaLR 1 364 0 744 276 123 27 chr6 7584754 7585547 -181694007 - L1ME LINE L1 -1100 5046 4164 1853 59 0 0 chr6 7585547 7585766 -181693788 - AluY SINE Alu -47 264 46 744 276 123 27 chr6 7585766 7585784 -181693770 - L1ME LINE L1 -1982 4164 4149 809 182 8 0 chr6 7585919 7586051 -181693503 + FLAM_C SINE Alu 1 133 0 1433 185 65 7 chr6 7586154 7586430 -181693124 - AluJb SINE Alu -18 294 3 2342 98 3 0 chr6 7586432 7586739 -181692815 - AluSp SINE Alu -5 308 1 814 229 13 13 chr6 7586744 7586901 -181692653 - FRAM SINE Alu -19 157 1 537 224 34 142 chr6 7586944 7587149 -181692405 + MIR SINE MIR 45 227 -35 1353 126 0 0 chr6 7588049 7588239 -181691315 - AluSg/x SINE Alu -40 270 81 2421 50 3 47 chr6 7589172 7589490 -181690064 + AluY SINE Alu 1 304 -7 456 227 70 64 chr6 7591810 7591982 -181687572 - L2 LINE L2 -7 3306 3134 868 281 191 11 chr6 7592059 7592503 -181687051 - L2 LINE L2 -337 2977 2454 499 337 122 25 chr6 7592622 7592901 -181686653 - L2 LINE L2 -9 3263 2958 948 157 0 76 chr6 7593043 7593241 -181686313 + MER20 DNA MER1_type 1 183 -36 718 238 85 68 chr6 7593524 7593805 -181685749 + MER102b DNA MER1_type 33 318 -23 890 147 61 37 chr6 7593951 7594114 -181685440 - FRAM SINE Alu -5 171 5 27 62 0 0 chr6 7594407 7594455 -181685099 + AT_rich Low_complexity Low_complexity 1 48 0 209 266 0 0 chr6 7594604 7594668 -181684886 + (ATG)n Simple_repeat Simple_repeat 3 66 0 384 264 155 19 chr6 7594987 7595142 -181684412 + L1ME4a LINE L1 5323 5478 -643 405 280 88 16 chr6 7595235 7595417 -181684137 + L1ME4a LINE L1 5671 5865 -256 2305 96 0 0 chr6 7595586 7595889 -181683665 + AluSx SINE Alu 1 303 -9 2312 115 3 0 chr6 7596666 7596970 -181682584 + AluSp SINE Alu 1 305 -8 2025 146 7 0 chr6 7597148 7597442 -181682112 - AluJb SINE Alu -16 296 1 252 0 0 0 chr6 7598327 7598355 -181681199 + (TG)n Simple_repeat Simple_repeat 2 29 0 2151 131 0 0 chr6 7598416 7598722 -181680832 + AluSx SINE Alu 1 306 -6 2527 61 0 3 chr6 7599295 7599606 -181679948 + AluY SINE Alu 2 311 0 517 194 0 20 chr6 7599668 7599766 -181679788 + FLAM_A SINE Alu 41 136 -6 638 243 153 16 chr6 7601630 7601819 -181677735 - MER58C DNA MER1_type 0 215 1 1289 155 120 11 chr6 7601827 7602111 -181677443 + MER33 DNA MER1_type 1 315 -9 1857 149 42 0 chr6 7603124 7603413 -181676141 - AluSx SINE Alu -11 301 1 1707 148 102 31 chr6 7603517 7603842 -181675712 - MER7A DNA MER2_type 0 346 1 321 327 26 18 chr6 7604579 7604692 -181674862 - L2 LINE L2 -489 2825 2712 586 215 74 0 chr6 7605084 7605247 -181674307 + MER104 DNA MER2_type 4 178 -2 1345 174 4 8 chr6 7606830 7607065 -181672489 - MER46A DNA MER2_type 0 236 3 234 91 0 0 chr6 7607212 7607245 -181672309 + (T)n Simple_repeat Simple_repeat 1 33 0 213 121 0 0 chr6 7607385 7607418 -181672136 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1962 168 3 0 chr6 7607421 7607731 -181671823 - AluJb SINE Alu -1 311 1 4786 141 59 50 chr6 7607755 7608097 -181671457 - L1MB3 LINE L1 -1 6182 5845 1935 137 7 7 chr6 7608097 7608396 -181671158 - AluSx SINE Alu -13 299 1 4786 141 59 50 chr6 7608396 7608922 -181670632 - L1MB3 LINE L1 -338 5845 5307 1334 209 10 39 chr6 7608922 7609228 -181670326 - AluJo SINE Alu -15 297 1 4786 141 59 50 chr6 7609228 7609419 -181670135 - L1MB3 LINE L1 -876 5307 5119 2067 136 3 3 chr6 7609476 7609771 -181669783 - AluSx SINE Alu -17 295 1 193 277 77 31 chr6 7610035 7610100 -181669454 + L2 LINE L2 3246 3313 0 2382 97 3 0 chr6 7610144 7610455 -181669099 - AluSp SINE Alu -1 312 1 876 134 20 7 chr6 7610457 7610606 -181668948 - AluYa8 SINE Alu -10 300 150 304 95 0 0 chr6 7610606 7610648 -181668906 - AluSq SINE Alu -129 174 133 513 0 0 0 chr6 7610648 7610705 -181668849 + (TG)n Simple_repeat Simple_repeat 2 58 0 1905 131 4 0 chr6 7610705 7610973 -181668581 - AluSg SINE Alu -28 282 14 299 29 0 0 chr6 7610973 7611007 -181668547 - AluY SINE Alu -251 50 17 1136 133 5 51 chr6 7611007 7611202 -181668352 - AluSx SINE Alu -124 188 3 180 0 0 0 chr6 7611230 7611250 -181668304 + (A)n Simple_repeat Simple_repeat 1 20 0 1507 165 64 32 chr6 7613214 7613513 -181666041 - MER58D DNA MER1_type -2050 370 82 2267 105 0 0 chr6 7613513 7613807 -181665747 + AluSx SINE Alu 1 294 -18 2194 99 14 3 chr6 7613807 7614101 -181665453 + AluSx SINE Alu 1 297 -15 1507 165 64 32 chr6 7614101 7614145 -181665409 - MER58D DNA MER1_type -2337 83 15 30 77 0 0 chr6 7614448 7614513 -181665041 + AT_rich Low_complexity Low_complexity 1 65 0 2430 202 7 0 chr6 7616177 7616602 -181662952 + Tigger7 DNA MER2_type 2 429 -304 1385 162 131 4 chr6 7616602 7616861 -181662693 + AluJo SINE Alu 16 307 -5 2433 130 46 23 chr6 7616861 7617252 -181662302 + Tigger7 DNA MER2_type 440 839 -1648 1570 136 62 0 chr6 7617251 7617493 -181662061 + Tigger7 DNA MER2_type 2227 2483 -4 * 2497 51 14 0 chr6 7617801 7618095 -181661459 + AluY SINE Alu 1 298 -13 999 164 0 0 chr6 7618108 7618267 -181661287 + FRAM SINE Alu 1 159 -17 1953 137 3 22 chr6 7618400 7618714 -181660840 + AluJb SINE Alu 5 312 0 22 0 0 0 chr6 7619129 7619151 -181660403 + AT_rich Low_complexity Low_complexity 1 22 0 1180 235 256 14 chr6 7619483 7620246 -181659308 - L2 LINE L2 0 3313 2369 2268 107 13 0 chr6 7621384 7621684 -181657870 - AluSx SINE Alu -8 304 1 217 182 23 23 chr6 7622585 7622629 -181656925 + MIR SINE MIR 141 184 -78 456 277 45 6 chr6 7622751 7622928 -181656626 + L1MC5 LINE L1 7260 7443 -518 2367 105 0 0 chr6 7622943 7623238 -181656316 + AluSg SINE Alu 1 295 -15 583 215 90 65 chr6 7623281 7623635 -181655919 + L1MC5 LINE L1 7554 7916 -45 693 138 16 16 chr6 7623656 7623779 -181655775 - AluJo/FRAM SINE Alu -25 287 165 369 97 113 0 chr6 7623779 7623841 -181655713 - AluJ/FLAM SINE Alu -233 69 1 2553 84 0 0 chr6 7624181 7624492 -181655062 + AluSx SINE Alu 1 311 -1 595 219 47 111 chr6 7624498 7624795 -181654759 + L2 LINE L2 3030 3307 -6 2220 100 43 0 chr6 7625200 7625499 -181654055 + AluSx SINE Alu 1 312 0 240 265 45 106 chr6 7625905 7626037 -181653517 + MIR3 SINE MIR 76 199 -9 2353 107 0 0 chr6 7626118 7626427 -181653127 + AluY SINE Alu 1 309 -2 1845 90 13 87 chr6 7626745 7627044 -181652510 - AluSq SINE Alu -6 307 31 8572 157 42 30 chr6 7627044 7628720 -181650834 + pTR5 LTR ERV1 743 2438 0 1579 183 39 0 chr6 7628871 7629156 -181650398 + AluSq SINE Alu 1 296 -17 297 230 59 16 chr6 7629226 7629320 -181650234 + MIR3 SINE MIR 80 162 -46 703 184 160 10 chr6 7629324 7629530 -181650024 + MER33 DNA MER1_type 1 237 -87 1684 164 29 0 chr6 7629656 7629931 -181649623 + AluJo SINE Alu 1 283 -29 720 163 81 73 chr6 7630298 7630313 -181649241 - L1MA4 LINE L1 -2 6298 6285 2344 96 0 3 chr6 7630313 7630606 -181648948 + AluSg SINE Alu 1 292 -18 720 163 81 73 chr6 7630606 7630715 -181648839 - L1MA4 LINE L1 -15 6285 6178 2028 130 0 42 chr6 7630715 7631022 -181648532 + AluSx SINE Alu 1 294 -18 720 163 81 73 chr6 7631022 7631142 -181648412 - L1MA4 LINE L1 -122 6178 6051 2187 101 30 7 chr6 7631623 7631919 -181647635 - AluSq SINE Alu -10 303 1 22 0 0 0 chr6 7632030 7632052 -181647502 + AT_rich Low_complexity Low_complexity 1 22 0 1573 190 46 23 chr6 7632080 7632385 -181647169 + AluJo SINE Alu 1 312 0 234 239 111 43 chr6 7632645 7632750 -181646804 + MIR3 SINE MIR 51 162 -46 2132 116 7 3 chr6 7635095 7635387 -181644167 - AluSx SINE Alu -19 293 1 919 98 53 0 chr6 7635457 7635589 -181643965 + MER85 DNA T2_type 1 139 0 1780 173 23 23 chr6 7635644 7635950 -181643604 - AluJb SINE Alu -6 306 1 233 213 0 0 chr6 7636281 7636328 -181643226 + (CA)n Simple_repeat Simple_repeat 2 48 0 2983 143 84 2 chr6 7636610 7637637 -181641917 + L1M3f LINE L1 84 1216 -4112 2368 112 0 10 chr6 7637647 7637959 -181641595 + AluSx SINE Alu 1 309 -3 2276 116 3 0 chr6 7638114 7638415 -181641139 - AluSx SINE Alu -10 302 1 1482 189 13 31 chr6 7638644 7639071 -181640483 + AluJb SINE Alu 1 448 -20 213 39 0 0 chr6 7639071 7639097 -181640457 + (GGGGA)n Simple_repeat Simple_repeat 2 27 0 1482 189 13 31 chr6 7639097 7639118 -181640436 + AluJb SINE Alu 448 468 0 2067 118 11 0 chr6 7639233 7639543 -181640011 + AluSp SINE Alu 1 313 0 2222 113 6 31 chr6 7639885 7640203 -181639351 - AluSg SINE Alu 0 310 1 1781 173 3 20 chr6 7640540 7640840 -181638714 - AluJo SINE Alu -12 300 6 377 198 79 0 chr6 7640940 7641066 -181638488 - HAL1 LINE L1 -134 2373 2238 539 179 9 9 chr6 7641119 7641225 -181638329 - FLAM_A SINE Alu -9 133 28 298 328 129 23 chr6 7641233 7641629 -181637925 - HAL1 LINE L1 -345 2162 1725 245 167 139 100 chr6 7641599 7641736 -181637818 - HAL1 LINE L1 -1330 1177 1030 * 2462 70 0 10 chr6 7641736 7642048 -181637506 + AluSc SINE Alu 1 309 0 245 167 139 100 chr6 7642048 7642090 -181637464 - HAL1 LINE L1 -1477 1030 991 331 176 0 44 chr6 7642110 7642178 -181637376 + MER74C LTR ERVL 6 70 -390 386 221 101 40 chr6 7642348 7642497 -181637057 - HAL1 LINE L1 -1994 513 356 7039 170 93 39 chr6 7642537 7644146 -181635408 + pTR5 LTR ERV1 743 2438 0 319 113 72 124 chr6 7644727 7644805 -181634749 - MER97a DNA MER1_type? -719 175 101 1705 168 0 14 chr6 7644805 7645096 -181634458 - AluJb SINE Alu -25 287 1 319 113 72 124 chr6 7645096 7645114 -181634440 - MER97a DNA MER1_type? -793 101 84 202 273 0 0 chr6 7645347 7645391 -181634163 - L2 LINE L2 -2 3311 3268 2109 116 10 0 chr6 7645434 7645726 -181633828 + AluSq SINE Alu 1 295 -18 2280 79 0 40 chr6 7645726 7646029 -181633525 + AluY SINE Alu 1 292 -19 2159 115 3 16 chr6 7646071 7646385 -181633169 - AluSx SINE Alu -2 310 1 230 368 132 0 chr6 7646815 7646989 -181632565 - L2 LINE L2 -564 2750 2554 2102 135 21 12 chr6 7648008 7648342 -181631212 - MER1B DNA MER1_type 0 337 1 204 216 0 39 chr6 7648537 7648588 -181630966 - L2 LINE L2 -4 3309 3261 2264 65 135 29 chr6 7648817 7648928 -181630626 - MER51B LTR ERV1 0 377 279 2403 67 0 51 chr6 7648928 7649243 -181630311 + AluY SINE Alu 1 299 -12 2264 65 135 29 chr6 7649243 7649472 -181630082 - MER51B LTR ERV1 -98 279 1 230 195 0 0 chr6 7649700 7649741 -181629813 + L2 LINE L2 3226 3266 -6 206 323 157 15 chr6 7649747 7650078 -181629476 - L2 LINE L2 -341 2973 2596 2318 103 0 22 chr6 7650153 7650472 -181629082 + AluSq SINE Alu 1 312 -1 1847 179 33 0 chr6 7650516 7650818 -181628736 - AluJo SINE Alu 0 312 1 2381 99 0 0 chr6 7651149 7651451 -181628103 - AluSg SINE Alu -7 303 2 21 0 0 0 chr6 7651569 7651590 -181627964 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 7651901 7651922 -181627632 + (CAG)n Simple_repeat Simple_repeat 1 21 0 2432 91 10 0 chr6 7652039 7652348 -181627206 - AluSx SINE Alu 0 312 1 1955 117 20 34 chr6 7652518 7652816 -181626738 - AluSx SINE Alu -18 294 1 2120 181 48 9 chr6 7652818 7653260 -181626294 + L1MB7 LINE L1 5706 6164 -20 272 307 50 55 chr6 7653406 7653644 -181625910 - L1MC4a LINE L1 -1753 6055 5819 1855 144 6 52 chr6 7653707 7653817 -181625737 - AluJo SINE Alu 0 312 198 4670 126 96 21 chr6 7653817 7654581 -181624973 + LTR1B LTR ERV1 4 824 -2 1855 144 6 52 chr6 7654581 7654797 -181624757 - AluJo SINE Alu -114 198 1 849 254 132 46 chr6 7654798 7655122 -181624432 - L1MC4a LINE L1 -2042 5766 5389 2279 114 3 0 chr6 7655122 7655428 -181624126 - AluSx SINE Alu -5 307 1 849 254 132 46 chr6 7655428 7655564 -181623990 - L1MC4a LINE L1 -2419 5389 5266 1839 146 28 24 chr6 7655696 7655984 -181623570 + AluJb SINE Alu 8 296 -16 2351 182 97 10 chr6 7656382 7656876 -181622678 + MLT1F1 LTR MaLR 20 556 -11 2281 94 3 0 chr6 7657007 7657295 -181622259 + AluSq SINE Alu 1 289 -24 1727 162 42 32 chr6 7657297 7657606 -181621948 - AluJb SINE Alu 0 312 1 7183 144 113 69 chr6 7657616 7659241 -181620313 + pTR5 LTR ERV1 742 2438 0 2573 196 86 18 chr6 7659279 7659850 -181619704 + LTR1B LTR ERV1 1 610 -216 2160 122 3 0 chr6 7659857 7660143 -181619411 + AluSq SINE Alu 7 293 -20 754 226 66 9 chr6 7660151 7660363 -181619191 - MER67B LTR ERV1 -437 224 1 1975 136 69 50 chr6 7660368 7660646 -181618908 - L1MB3 LINE L1 -69 6114 5843 2329 95 3 0 chr6 7660646 7660940 -181618614 + AluSg SINE Alu 2 296 -14 1975 136 69 50 chr6 7660940 7661090 -181618464 - L1MB3 LINE L1 -340 5843 5674 1710 141 94 0 chr6 7661090 7661366 -181618188 - AluJo SINE Alu -2 310 9 1975 136 69 50 chr6 7661366 7661400 -181618154 - L1MB3 LINE L1 -509 5674 5642 506 291 145 42 chr6 7661657 7661911 -181617643 + L2 LINE L2 2917 3220 -93 1305 182 164 33 chr6 7661911 7661959 -181617595 - MER93b LTR ERV1 0 373 333 2440 94 0 0 chr6 7661959 7662258 -181617296 + AluSc SINE Alu 1 299 -10 1305 182 164 33 chr6 7662258 7662539 -181617015 - MER93b LTR ERV1 -40 333 1 506 291 145 42 chr6 7662539 7662642 -181616912 + L2 LINE L2 3220 3311 -2 32 0 0 0 chr6 7663301 7663333 -181616221 + AT_rich Low_complexity Low_complexity 1 32 0 782 161 31 0 chr6 7663353 7663483 -181616071 + AluJb SINE Alu 179 312 0 629 153 6 123 chr6 7663483 7663631 -181615923 + L1MB3 LINE L1 5672 5799 -381 1811 140 16 23 chr6 7663631 7663766 -181615788 + AluJo SINE Alu 1 135 -177 2236 130 0 0 chr6 7663766 7664058 -181615496 + AluSx SINE Alu 1 292 -20 1811 140 16 23 chr6 7664058 7664230 -181615324 + AluJo SINE Alu 135 306 -6 629 153 6 123 chr6 7664230 7664251 -181615303 + L1MB3 LINE L1 5799 5821 -359 1007 143 15 35 chr6 7664252 7664455 -181615099 + L1MB3 LINE L1 5983 6181 -2 2168 107 19 29 chr6 7664455 7664770 -181614784 + L1MB3 LINE L1 5812 6131 -52 1981 119 40 0 chr6 7664770 7665048 -181614506 + AluSg SINE Alu 1 289 -21 2168 107 19 29 chr6 7665048 7665100 -181614454 + L1MB3 LINE L1 6131 6182 -1 305 209 86 29 chr6 7665512 7665617 -181613937 + LTR68 LTR ERV1 615 725 -15 371 284 30 12 chr6 7665681 7665763 -181613791 + L1P5 LINE L1 5276 5355 -796 2010 144 24 0 chr6 7665763 7666055 -181613499 + AluSx SINE Alu 1 299 -13 371 284 30 12 chr6 7666055 7666141 -181613413 + L1P5 LINE L1 5355 5447 -704 1313 179 0 60 chr6 7666230 7666515 -181613039 + L1MB8 LINE L1 5910 6177 -1 1215 113 88 29 chr6 7666523 7666763 -181612791 + L1MA9 LINE L1 6059 6312 0 1786 168 41 3 chr6 7666777 7667069 -181612485 + AluJb SINE Alu 2 304 -8 316 219 23 76 chr6 7667108 7667238 -181612316 + L1ME LINE L1 5455 5578 -543 392 270 103 17 chr6 7667293 7667467 -181612087 + L1ME LINE L1 5581 5769 -393 535 269 32 56 chr6 7667576 7667703 -181611851 + L1ME3A LINE L1 5706 5826 -344 2457 83 0 0 chr6 7667703 7668003 -181611551 + AluSx SINE Alu 1 300 -12 535 269 32 56 chr6 7668003 7668124 -181611430 + L1ME3A LINE L1 5826 5948 -222 465 232 168 0 chr6 7669401 7669553 -181610001 + MER5A DNA MER1_type 4 186 -3 1473 146 0 53 chr6 7670473 7670580 -181608974 - AluJo SINE Alu -76 236 125 2492 69 10 3 chr6 7670580 7670885 -181608669 - AluSx SINE Alu 0 312 6 1473 146 0 53 chr6 7670885 7671024 -181608530 - AluJo SINE Alu -187 125 3 346 234 76 21 chr6 7671078 7671223 -181608331 - L1ME4a LINE L1 -2 6119 5967 2283 96 3 3 chr6 7671617 7671908 -181607646 - AluSp SINE Alu -22 291 1 402 299 92 28 chr6 7672399 7672616 -181606938 + L2 LINE L2 1912 2142 -1172 3149 142 126 50 chr6 7672662 7673190 -181606364 - L1MB3 LINE L1 -14 6169 5683 1306 203 53 14 chr6 7673190 7673471 -181606083 - AluJo SINE Alu -20 292 1 1759 103 4 4 chr6 7673477 7673709 -181605845 - AluSc SINE Alu -16 293 62 3149 142 126 50 chr6 7673709 7673840 -181605714 - L1MB3 LINE L1 -504 5679 5452 1890 177 0 0 chr6 7673858 7674158 -181605396 - AluSx SINE Alu -12 300 1 2344 97 10 7 chr6 7674690 7674999 -181604555 + AluSx SINE Alu 1 310 -2 244 250 0 0 chr6 7675224 7675280 -181604274 + A-rich Low_complexity Low_complexity 1 56 0 318 285 112 43 chr6 7675425 7675857 -181603697 - L2 LINE L2 -211 3061 2585 366 250 0 43 chr6 7675928 7676020 -181603534 - L2 LINE L2 -24 3248 3161 770 157 8 0 chr6 7676046 7676167 -181603387 - MSTD LTR MaLR -2 394 273 2164 104 0 52 chr6 7676207 7676515 -181603039 + AluSx SINE Alu 1 292 -20 342 107 0 0 chr6 7676515 7676571 -181602983 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 930 150 7 0 chr6 7676597 7676737 -181602817 - AluJb SINE Alu -171 141 1 729 211 173 46 chr6 7676739 7676874 -181602680 - MSTD LTR MaLR -129 267 150 1615 173 0 22 chr6 7676874 7677151 -181602403 - AluJo SINE Alu -31 281 11 729 211 173 46 chr6 7677151 7677252 -181602302 - MSTD LTR MaLR -246 150 1 336 333 67 5 chr6 7677383 7677593 -181601961 - L2 LINE L2 -240 3032 2810 644 306 128 12 chr6 7677810 7678238 -181601316 - L2 LINE L2 -925 2389 1912 415 210 68 49 chr6 7679127 7679148 -181600406 + L1ME4a LINE L1 5957 5976 -145 2231 107 0 3 chr6 7679148 7679447 -181600107 + AluSc SINE Alu 1 298 -11 415 210 68 49 chr6 7679447 7679587 -181599967 + L1ME4a LINE L1 5976 6121 0 1690 165 0 0 chr6 7679639 7679905 -181599649 + AluJo SINE Alu 2 267 -45 2204 101 3 13 chr6 7680402 7680700 -181598854 - AluSq SINE Alu -18 295 1 2348 72 23 3 chr6 7681022 7681326 -181598228 + AluY SINE Alu 1 310 -1 240 35 0 0 chr6 7681864 7681893 -181597661 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2476 70 0 3 chr6 7681994 7682296 -181597258 - AluY SINE Alu -10 301 1 288 102 0 0 chr6 7682419 7682468 -181597086 + (A)n Simple_repeat Simple_repeat 1 49 0 1990 119 0 51 chr6 7684218 7684530 -181595024 + AluSx SINE Alu 1 296 -16 2407 230 51 24 chr6 7684786 7685525 -181594029 - L1M4 LINE L1 -1267 4879 4121 434 174 0 54 chr6 7685525 7685617 -181593937 - MER6 DNA MER2_type 0 865 58 1057 162 18 0 chr6 7685631 7685798 -181593756 - AluJo SINE Alu -142 170 1 515 167 29 29 chr6 7685803 7685905 -181593649 + MER6 DNA MER2_type 43 865 0 1457 202 0 73 chr6 7685905 7686002 -181593552 - L1M4 LINE L1 -2024 4122 4020 2185 148 42 0 chr6 7686002 7686380 -181593174 - L1MB3 LINE L1 -7 6176 5783 1457 202 0 73 chr6 7686380 7686654 -181592900 - L1M4 LINE L1 -2126 4020 3778 * 1955 186 20 18 chr6 7686650 7687049 -181592505 - L1MB3 LINE L1 -1091 5055 4656 230 250 16 0 chr6 7687110 7687154 -181592400 + MER5B DNA MER1_type 1 48 -130 2323 117 0 0 chr6 7687154 7687461 -181592093 - AluSx SINE Alu -5 307 1 230 250 16 0 chr6 7687461 7687480 -181592074 + MER5B DNA MER1_type 48 65 -113 2009 115 59 3 chr6 7687567 7687855 -181591699 - AluSx SINE Alu -8 304 1 2029 139 0 32 chr6 7687881 7688197 -181591357 - AluSx SINE Alu 0 312 7 338 272 44 0 chr6 7688540 7688654 -181590900 + MIR SINE MIR 119 237 -25 2121 98 39 3 chr6 7689226 7689511 -181590043 - AluSx SINE Alu -17 295 1 2034 144 0 10 chr6 7689613 7689919 -181589635 + AluJb SINE Alu 1 303 -9 1776 177 0 7 chr6 7690061 7690355 -181589199 - AluJo SINE Alu -20 292 1 201 367 69 25 chr6 7690502 7690777 -181588777 + L2 LINE L2 2928 3214 -58 1905 164 0 6 chr6 7691446 7691757 -181587797 + AluJo SINE Alu 1 309 -3 199 278 37 0 chr6 7691941 7691995 -181587559 - L2 LINE L2 -9 3263 3208 4753 175 36 14 chr6 7692755 7694293 -181585261 - L1MB4 LINE L1 0 6180 4611 257 253 13 13 chr6 7695422 7695501 -181584053 + L2 LINE L2 2571 2649 -665 2530 133 3 8 chr6 7695773 7696164 -181583390 + MLT1B LTR MaLR 2 567 0 314 284 45 8 chr6 7696220 7696354 -181583200 - L1MC4a LINE L1 -1878 5930 5792 2339 107 0 0 chr6 7696369 7696667 -181582887 - AluSx SINE Alu -14 298 1 211 275 44 33 chr6 7696809 7696900 -181582654 - MIR3 SINE MIR -28 180 89 219 224 69 0 chr6 7697095 7697153 -181582401 - MIR3 SINE MIR -35 173 112 231 114 227 0 chr6 7697181 7697225 -181582329 - L1MB5 LINE L1 -240 5934 5881 37 23 0 0 chr6 7697491 7697535 -181582019 + AT_rich Low_complexity Low_complexity 1 44 0 837 123 0 16 chr6 7697536 7697658 -181581896 - FLAM_C SINE Alu -22 121 2 244 244 52 43 chr6 7697908 7698023 -181581531 - L2 LINE L2 -190 3082 2967 22 0 0 0 chr6 7698406 7698428 -181581126 + AT_rich Low_complexity Low_complexity 1 22 0 1822 164 49 9 chr6 7698494 7698741 -181580813 + MER46B DNA MER2_type 14 154 -2577 16157 109 20 21 chr6 7698741 7701161 -181578393 - Tigger1 DNA MER2_type 0 2418 1 1822 164 49 9 chr6 7701161 7701242 -181578312 + MER46B DNA MER2_type 154 230 -6 360 43 0 0 chr6 7701242 7701288 -181578266 + (TG)n Simple_repeat Simple_repeat 1 46 0 1210 178 11 58 chr6 7701304 7701579 -181577975 - AluJo SINE Alu -16 296 35 1861 113 6 98 chr6 7702048 7702385 -181577169 + AluSp SINE Alu 1 306 -7 216 321 98 16 chr6 7702628 7702874 -181576680 - L2 LINE L2 -665 2649 2384 2369 97 0 0 chr6 7703205 7703504 -181576050 + AluSx SINE Alu 1 299 -13 2320 106 3 0 chr6 7703505 7703817 -181575737 + AluSp SINE Alu 1 313 0 1467 161 101 4 chr6 7705110 7705377 -181574177 - AluJo SINE Alu -13 299 7 2146 120 27 0 chr6 7705979 7706271 -181573283 + AluSx SINE Alu 1 300 -12 423 298 53 0 chr6 7706273 7706387 -181573167 + MIR3 SINE MIR 41 160 -48 541 224 36 73 chr6 7706387 7706579 -181572975 + MER63A DNA MER1_type 1 185 -25 3673 163 18 24 chr6 7708070 7708267 -181571287 + L1MB3 LINE L1 5476 5673 -510 2251 102 0 37 chr6 7708267 7708411 -181571143 + AluSx SINE Alu 1 149 -163 2209 113 3 0 chr6 7708411 7708702 -181570852 + AluSq SINE Alu 1 292 -21 2251 102 0 37 chr6 7708702 7708879 -181570675 + AluSx SINE Alu 149 310 -2 3673 163 18 24 chr6 7708879 7709393 -181570161 + L1MB3 LINE L1 5673 6183 0 1838 168 3 10 chr6 7709469 7709773 -181569781 - AluJb SINE Alu -10 302 1 2109 145 0 3 chr6 7709854 7710157 -181569397 + AluSx SINE Alu 9 310 -2 253 136 34 0 chr6 7710157 7710211 -181569343 + GA-rich Low_complexity Low_complexity 9 64 0 505 292 24 0 chr6 7710211 7710379 -181569175 + MIR SINE MIR 84 255 -7 899 146 0 0 chr6 7710379 7710509 -181569045 + FLAM_C SINE Alu 1 130 -3 1043 146 59 64 chr6 7711231 7711451 -181568103 + MER20 DNA MER1_type 1 219 0 2333 105 0 0 chr6 7711585 7711881 -181567673 + AluSx SINE Alu 2 297 -15 619 135 0 149 chr6 7711943 7712084 -181567470 - FLAM_C SINE Alu 0 143 24 730 264 28 14 chr6 7712575 7712791 -181566763 + MIR SINE MIR 42 260 -2 253 270 123 49 chr6 7713281 7713335 -181566219 + MER5B DNA MER1_type 1 50 -128 1372 169 126 8 chr6 7713335 7713596 -181565958 + AluJb SINE Alu 1 292 -20 253 270 123 49 chr6 7713596 7713704 -181565850 + MER5B DNA MER1_type 50 175 -3 200 267 33 0 chr6 7713720 7713780 -181565774 - MER5A DNA MER1_type 0 189 128 1979 150 3 3 chr6 7714350 7714644 -181564910 - AluJo SINE Alu -18 294 1 270 0 0 0 chr6 7715312 7715342 -181564212 + (CA)n Simple_repeat Simple_repeat 1 30 0 465 181 62 42 chr6 7715361 7715505 -181564049 - L1ME4a LINE L1 -1 6120 5974 2534 146 29 77 chr6 7715857 7716336 -181563218 - LTR32 LTR ERVL 0 471 16 775 224 29 6 chr6 7716663 7716837 -181562717 + MER5B DNA MER1_type 1 178 0 533 274 5 48 chr6 7716845 7717031 -181562523 + MER5B DNA MER1_type 1 178 0 252 312 18 37 chr6 7717141 7717250 -181562304 + MIR3 SINE MIR 12 118 -90 180 0 0 0 chr6 7717344 7717364 -181562190 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 2394 77 3 3 chr6 7719306 7719604 -181559950 - AluSq SINE Alu -15 298 1 1705 165 43 16 chr6 7720248 7720551 -181559003 - AluJb SINE Alu -1 311 1 843 147 0 52 chr6 7721593 7721729 -181557825 - AluJb SINE Alu -181 131 3 1887 148 10 7 chr6 7722490 7722787 -181556767 + AluJo SINE Alu 3 300 -12 714 207 59 68 chr6 7722810 7722997 -181556557 - L1ME3A LINE L1 -5 6165 5979 2162 141 3 0 chr6 7722997 7723302 -181556252 - AluSx SINE Alu -6 306 1 714 207 59 68 chr6 7723302 7723351 -181556203 - L1ME3A LINE L1 -191 5979 5931 879 150 15 0 chr6 7724123 7724256 -181555298 - FAM SINE Alu -43 142 8 273 57 0 0 chr6 7724314 7724349 -181555205 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 2015 123 36 26 chr6 7725041 7725350 -181554204 + AluSx SINE Alu 1 312 0 2414 69 0 7 chr6 7726309 7726600 -181552954 - AluSc SINE Alu -20 289 1 183 129 0 0 chr6 7726735 7726766 -181552788 + (GGGAGA)n Simple_repeat Simple_repeat 5 35 0 412 314 24 39 chr6 7726835 7727042 -181552512 + MIR SINE MIR 59 262 0 262 307 71 55 chr6 7727038 7727165 -181552389 + L2 LINE L2 3139 3267 -5 * 2217 121 0 19 chr6 7727690 7728004 -181551550 + AluSq SINE Alu 1 308 -5 231 61 0 0 chr6 7728133 7728166 -181551388 + (T)n Simple_repeat Simple_repeat 1 33 0 598 292 56 64 chr6 7729139 7729499 -181550055 + L1ME3 LINE L1 5526 5882 -280 1956 148 23 0 chr6 7729503 7729808 -181549746 + AluSx SINE Alu 1 312 0 363 167 211 0 chr6 7730496 7730586 -181548968 - L1ME4a LINE L1 -40 6081 5973 299 250 180 57 chr6 7730649 7730877 -181548677 + MIR SINE MIR 7 262 0 1820 254 66 21 chr6 7731355 7731951 -181547603 + HAL1 LINE L1 1464 2089 -418 2123 99 3 78 chr6 7731951 7732285 -181547269 + AluSq SINE Alu 1 309 -4 2649 138 12 39 chr6 7732315 7732637 -181546917 + L1MB3 LINE L1 5700 6006 -177 1620 151 100 0 chr6 7732637 7732916 -181546638 - AluJb SINE Alu -5 307 1 2649 138 12 39 chr6 7732916 7733086 -181546468 + L1MB3 LINE L1 6006 6179 -4 700 161 110 0 chr6 7734559 7734677 -181544877 + FLAM_C SINE Alu 1 131 -2 380 264 125 50 chr6 7734736 7734827 -181544727 + L1ME4a LINE L1 5796 5879 -242 2456 92 0 0 chr6 7734827 7735133 -181544421 + AluSx SINE Alu 1 306 -6 380 264 125 50 chr6 7735133 7735344 -181544210 + L1ME4a LINE L1 5879 6121 0 265 106 0 45 chr6 7735567 7735633 -181543921 + (CAAAAA)n Simple_repeat Simple_repeat 2 64 0 1613 163 64 0 chr6 7735736 7736019 -181543535 - AluJb SINE Alu -11 301 1 225 0 0 0 chr6 7736410 7736435 -181543119 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 467 159 57 0 chr6 7736519 7736607 -181542947 + FLAM_A SINE Alu 48 140 -2 1645 197 10 3 chr6 7736695 7736994 -181542560 + AluJo SINE Alu 1 301 -11 1721 150 34 24 chr6 7737969 7738263 -181541291 - AluJb SINE Alu -15 297 1 1843 156 0 3 chr6 7738827 7739133 -181540421 + AluJb SINE Alu 1 305 0 255 103 0 0 chr6 7740071 7740110 -181539444 + (TG)n Simple_repeat Simple_repeat 2 40 0 2197 128 0 0 chr6 7740572 7740870 -181538684 - AluSx SINE Alu -8 304 7 267 286 29 29 chr6 7741115 7741181 -181538373 + Tigger8 DNA MER2_type 153 221 -445 2517 116 3 6 chr6 7741181 7741543 -181538011 + MER46B DNA MER2_type 1 236 0 267 286 29 29 chr6 7741543 7741581 -181537973 + Tigger8 DNA MER2_type 220 257 -409 21 0 0 0 chr6 7742857 7742878 -181536676 + GC_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 7744145 7744173 -181535381 + GC_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr6 7744827 7744849 -181534705 + (T)n Simple_repeat Simple_repeat 1 22 0 195 129 0 0 chr6 7745907 7745938 -181533616 + (T)n Simple_repeat Simple_repeat 1 31 0 21 57 0 0 chr6 7747804 7747839 -181531715 + AT_rich Low_complexity Low_complexity 1 35 0 394 227 31 10 chr6 7747932 7748029 -181531525 - MIR SINE MIR -116 146 48 1770 161 0 31 chr6 7748855 7749170 -181530384 - AluJo SINE Alu 0 306 1 2309 84 13 0 chr6 7749422 7749721 -181529833 + AluSg SINE Alu 2 304 -6 2501 61 3 0 chr6 7750586 7750882 -181528672 - AluSp SINE Alu -16 297 1 250 274 0 0 chr6 7751184 7751235 -181528319 + polypurine Low_complexity Low_complexity 3 53 0 1730 147 0 55 chr6 7751476 7751788 -181527766 - AluJb SINE Alu -17 295 1 22 0 0 0 chr6 7751796 7751818 -181527736 + AT_rich Low_complexity Low_complexity 1 22 0 2193 108 0 10 chr6 7752778 7753075 -181526479 + AluSx SINE Alu 1 294 -18 2331 98 0 23 chr6 7753711 7754018 -181525536 + AluSx SINE Alu 5 304 -8 446 151 54 0 chr6 7754465 7754558 -181524996 - L1MD3 LINE L1 0 7995 7898 744 154 0 16 chr6 7754570 7754693 -181524861 - FLAM_C SINE Alu -12 131 11 396 0 0 0 chr6 7755516 7755560 -181523994 + (CA)n Simple_repeat Simple_repeat 2 45 0 1640 181 3 37 chr6 7756090 7756388 -181523166 - AluJo SINE Alu -24 288 1 905 201 81 54 chr6 7756620 7756879 -181522675 + L1MC4 LINE L1 7655 7920 -122 635 186 55 125 chr6 7756876 7757121 -181522433 + L1MC4 LINE L1 7827 8042 0 * 597 231 36 34 chr6 7758621 7758798 -181520756 - L1MD3 LINE L1 0 7983 6191 2419 109 0 0 chr6 7758831 7759143 -181520411 + AluSx SINE Alu 1 312 0 1677 156 34 30 chr6 7759941 7760236 -181519318 - AluJb SINE Alu -5 307 12 2128 123 0 7 chr6 7762384 7762685 -181516869 - AluSg SINE Alu -11 299 1 983 84 0 63 chr6 7765389 7765531 -181514023 - AluSq/x SINE Alu -179 133 1 1721 110 23 0 chr6 7765991 7766254 -181513300 + L1MA4 LINE L1 6027 6295 -5 2245 84 3 17 chr6 7766296 7766594 -181512960 + AluSx SINE Alu 1 294 -18 2223 87 3 19 chr6 7767120 7767431 -181512123 + L1PA13 LINE L1 5858 6163 0 1096 217 18 5 chr6 7768051 7768272 -181511282 - MER58A DNA MER1_type 0 224 1 2330 102 3 0 chr6 7770986 7771280 -181508274 + AluSp SINE Alu 1 295 -18 21 0 0 0 chr6 7772610 7772631 -181506923 + AT_rich Low_complexity Low_complexity 1 21 0 194 281 16 31 chr6 7773872 7773936 -181505618 - MIR3 SINE MIR -136 72 10 1533 129 141 0 chr6 7774168 7774416 -181505138 - MER7A DNA MER2_type -6 340 60 755 156 170 22 chr6 7774417 7774552 -181505002 + FRAM SINE Alu 1 155 -11 267 173 0 0 chr6 7774552 7774604 -181504950 + (TG)n Simple_repeat Simple_repeat 1 52 0 365 192 14 27 chr6 7774604 7774677 -181504877 - MER7A DNA MER2_type -275 73 2 2109 200 39 33 chr6 7774678 7774730 -181504824 + L1MA9 LINE L1 5782 5832 -480 2512 73 0 3 chr6 7774730 7775033 -181504521 + AluSg SINE Alu 1 302 -8 2109 200 39 33 chr6 7775033 7775470 -181504084 + L1MA9 LINE L1 5832 6274 -38 372 200 118 0 chr6 7776425 7776510 -181503044 + MER103 DNA DNA 4 98 -68 1628 164 52 44 chr6 7777323 7777689 -181501865 - L1MB8 LINE L1 -225 5953 5585 234 0 0 0 chr6 7778755 7778781 -181500773 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 2046 107 4 0 chr6 7778785 7779055 -181500499 - AluSp SINE Alu -36 277 7 219 295 0 26 chr6 7779349 7779427 -181500127 + CT-rich Low_complexity Low_complexity 5 80 0 339 349 16 8 chr6 7780455 7780584 -181498970 - MIR SINE MIR -62 146 17 252 0 0 0 chr6 7783573 7783601 -181495953 + (TG)n Simple_repeat Simple_repeat 2 29 0 229 135 56 0 chr6 7783601 7783690 -181495864 + (TA)n Simple_repeat Simple_repeat 2 95 0 647 204 74 32 chr6 7789092 7789394 -181490160 - MLT1B LTR MaLR 0 390 1 2408 88 0 0 chr6 7789763 7790060 -181489494 + AluSg SINE Alu 1 297 -13 1964 257 137 44 chr6 7790357 7791442 -181488112 + L1MC4 LINE L1 6831 8016 -26 2213 106 0 0 chr6 7792129 7792430 -181487124 + AluJb SINE Alu 1 301 -11 553 213 81 0 chr6 7793132 7793268 -181486286 - MIR SINE MIR -59 203 57 329 297 82 61 chr6 7793549 7793898 -181485656 - L2 LINE L2 -218 3054 2694 * 859 239 5 50 chr6 7793895 7794117 -181485437 - MIR SINE MIR 0 262 51 567 289 186 48 chr6 7794165 7795014 -181484540 - L2 LINE L2 -650 2664 1699 22 0 0 0 chr6 7795109 7795131 -181484423 + AT_rich Low_complexity Low_complexity 1 22 0 526 288 108 9 chr6 7795919 7796131 -181483423 + MIR SINE MIR 1 233 -29 22 0 0 0 chr6 7796808 7796830 -181482724 + AT_rich Low_complexity Low_complexity 1 22 0 314 234 13 26 chr6 7796837 7796914 -181482640 + Tigger5 DNA MER2_type 1 76 -2247 540 103 13 13 chr6 7796963 7797041 -181482513 + Tigger5 DNA MER2_type 2245 2322 -1 2189 108 0 7 chr6 7797415 7797710 -181481844 + AluSx SINE Alu 1 293 -19 359 256 0 0 chr6 7798334 7798412 -181481142 - MIR3 SINE MIR -6 202 125 275 252 98 26 chr6 7798500 7798654 -181480900 - MIR SINE MIR -50 212 45 2251 86 3 10 chr6 7799299 7799600 -181479954 - AluY SINE Alu -12 299 1 2313 107 0 0 chr6 7799646 7799945 -181479609 + AluSx SINE Alu 1 299 -13 378 289 23 47 chr6 7800489 7800617 -181478937 + MIR3 SINE MIR 50 174 -34 819 126 80 7 chr6 7800732 7800883 -181478671 + L1MB3 LINE L1 6019 6180 -3 1835 162 8 64 chr6 7803090 7803284 -181476270 - MER2 DNA MER2_type -1 344 178 2011 156 3 0 chr6 7803284 7803586 -181475968 - AluSx SINE Alu -9 303 1 1835 162 8 64 chr6 7803586 7803749 -181475805 - MER2 DNA MER2_type -167 178 7 281 320 76 41 chr6 7804417 7804614 -181474940 + MIR SINE MIR 3 206 -56 273 141 84 42 chr6 7805370 7805441 -181474113 - L1MC5 LINE L1 -51 7910 7837 659 208 50 134 chr6 7806306 7806678 -181472876 - L1MD3 LINE L1 -1 8035 7709 1033 55 78 0 chr6 7807164 7807292 -181472262 - MER85 DNA T2_type -1 138 1 229 226 19 0 chr6 7807946 7807999 -181471555 + CT-rich Low_complexity Low_complexity 4 57 0 274 303 140 28 chr6 7808154 7808332 -181471222 + L2 LINE L2 2286 2483 -831 1858 163 3 0 chr6 7808470 7808758 -181470796 + AluJb SINE Alu 1 289 -23 459 320 105 31 chr6 7808876 7809170 -181470384 + L2 LINE L2 2871 3186 -86 2285 93 10 3 chr6 7809708 7810018 -181469536 + AluSq SINE Alu 1 312 -1 280 331 54 6 chr6 7810758 7810924 -181468630 + L1ME2 LINE L1 5734 5907 -257 21 0 0 0 chr6 7811114 7811135 -181468419 + AT_rich Low_complexity Low_complexity 1 21 0 325 298 33 26 chr6 7811179 7811196 -181468358 - L1MA10 LINE L1 -1 6333 6317 968 239 95 20 chr6 7811196 7811544 -181468010 - L1ME1 LINE L1 -8 6158 5785 265 209 30 15 chr6 7811879 7811946 -181467608 - MER116 DNA Mariner -6 74 7 206 306 118 0 chr6 7812257 7812342 -181467212 + L2 LINE L2 3126 3220 -52 1394 162 4 9 chr6 7812512 7812741 -181466813 - AluJo SINE Alu -56 256 29 640 139 165 26 chr6 7812790 7812905 -181466649 - FLAM_C SINE Alu -2 131 1 2006 139 27 0 chr6 7814590 7814891 -181464663 + AluJo SINE Alu 1 309 -3 2147 138 55 17 chr6 7814966 7815314 -181464240 + MER46B DNA MER2_type 1 236 0 3469 213 36 46 chr6 7815376 7815929 -181463625 - MER21B LTR ERV1 -31 832 290 2177 112 7 0 chr6 7815929 7816223 -181463331 + AluSx SINE Alu 1 296 -16 3469 213 36 46 chr6 7816223 7816510 -181463044 - MER21B LTR ERV1 -573 290 1 223 322 50 41 chr6 7816517 7816638 -181462916 + L2 LINE L2 2574 2695 -619 1141 88 0 0 chr6 7816799 7816946 -181462608 + AluSg/x SINE Alu 153 299 -13 2382 295 188 22 chr6 7817178 7817799 -181461755 + L2 LINE L2 1500 2017 -1296 2306 78 14 0 chr6 7817799 7818095 -181461459 - AluSq SINE Alu -13 300 1 2382 295 188 22 chr6 7818095 7819029 -181460525 + L2 LINE L2 2017 3313 0 212 261 39 100 chr6 7820340 7820470 -181459084 + L2 LINE L2 1333 1454 -1860 284 339 125 0 chr6 7820515 7820707 -181458847 - MIR SINE MIR -16 246 31 181 300 0 0 chr6 7820709 7820769 -181458785 + L2 LINE L2 3207 3266 -6 906 105 8 0 chr6 7821175 7821299 -181458255 + AluJb SINE Alu 7 131 -181 1566 173 0 91 chr6 7821477 7821835 -181457719 - MLT2D LTR ERVL 0 414 94 462 252 9 0 chr6 7822433 7822544 -181457010 - MLT2D LTR ERVL -302 112 1 248 26 26 51 chr6 7822750 7822789 -181456765 - MER69 DNA AcHobo -42 2484 2447 1511 191 0 29 chr6 7822793 7823066 -181456488 + AluJo SINE Alu 3 267 -45 914 270 9 0 chr6 7823420 7823642 -181455912 - MER58A DNA MER1_type 0 224 1 2100 122 3 0 chr6 7824681 7824985 -181454569 + AluSx SINE Alu 1 305 -7 331 320 36 77 chr6 7825873 7826067 -181453487 + L1ME LINE L1 5268 5453 -709 2569 121 33 51 chr6 7826195 7826648 -181452906 + MER65A LTR ERV1 1 445 0 735 300 58 8 chr6 7826654 7826897 -181452657 - MIR SINE MIR -4 258 4 287 146 18 0 chr6 7827259 7827314 -181452240 + T-rich Low_complexity Low_complexity 4 59 0 1734 166 13 7 chr6 7827316 7827618 -181451936 - AluSx SINE Alu -8 304 1 1946 138 0 16 chr6 7828037 7828355 -181451199 - AluSq SINE Alu 0 313 1 228 341 0 24 chr6 7828364 7828446 -181451108 + LTR67 LTR ERVL 98 177 -380 * 820 272 46 79 chr6 7828382 7828617 -181450937 + MLT1J LTR MaLR 110 326 -185 1404 217 117 42 chr6 7828617 7828684 -181450870 - MLT1C LTR MaLR -4 463 402 1505 66 0 0 chr6 7828684 7828867 -181450687 + AluY SINE Alu 1 183 -128 1404 217 117 42 chr6 7828867 7829228 -181450326 - MLT1C LTR MaLR -65 402 3 820 272 46 79 chr6 7829228 7829408 -181450146 + MLT1J LTR MaLR 326 511 0 473 0 0 17 chr6 7829412 7829470 -181450084 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 2328 76 0 0 chr6 7829639 7829943 -181449611 + AluY SINE Alu 1 304 -7 230 281 0 16 chr6 7830096 7830160 -181449394 + GA-rich Low_complexity Low_complexity 1 63 0 1206 167 9 14 chr6 7831617 7831827 -181447727 + MLT1A1 LTR MaLR 18 226 -139 357 194 16 0 chr6 7831817 7831879 -181447675 - MER115 DNA AcHobo -467 226 164 * 465 276 0 98 chr6 7882385 7882559 -181396995 + MER5B DNA MER1_type 1 157 -21 1387 60 0 0 chr6 7882710 7882876 -181396678 - AluSg/x SINE Alu -11 299 134 957 248 16 33 chr6 7883072 7883378 -181396176 + L1MC4 LINE L1 6788 7088 -954 375 231 103 17 chr6 7883407 7883524 -181396030 + L1MC5 LINE L1 6982 7108 -853 299 181 162 29 chr6 7883587 7883692 -181395862 + L1MC5 LINE L1 7109 7227 -734 694 264 184 48 chr6 7883760 7884070 -181395484 - MLT1H LTR MaLR -173 394 43 331 269 195 62 chr6 7884106 7884363 -181395191 - MLT1H-int LTR MaLR -7 1364 1074 1162 265 31 55 chr6 7884658 7885140 -181394414 + L1MC5 LINE L1 7304 7771 -190 1718 182 0 7 chr6 7885140 7885437 -181394117 + AluJb SINE Alu 1 295 -17 1162 265 31 55 chr6 7885437 7885536 -181394018 + L1MC5 LINE L1 7771 7871 -90 847 218 0 0 chr6 7885575 7885722 -181393832 - FRAM SINE Alu -30 146 1 2272 116 3 0 chr6 7886107 7886418 -181393136 - AluSp SINE Alu 0 313 2 1203 273 104 67 chr6 7886535 7886670 -181392884 - HAL1 LINE L1 -53 2454 2325 2096 117 3 22 chr6 7886670 7886986 -181392568 + AluSx SINE Alu 1 310 -2 1203 273 104 67 chr6 7886986 7887609 -181391945 - HAL1 LINE L1 -182 2325 1668 1013 214 117 16 chr6 7887682 7887999 -181391555 - LTR16A LTR ERVL -36 414 66 1394 331 58 36 chr6 7888404 7889309 -181390245 - HERV16 LTR ERVL -697 5067 4144 759 293 21 45 chr6 7889304 7889486 -181390068 - HERV16 LTR ERVL -2225 2771 2586 * 2874 122 7 23 chr6 7889486 7889920 -181389634 - MSTC LTR MaLR 0 428 2 759 293 21 45 chr6 7889920 7889936 -181389618 - HERV16 LTR ERVL -2410 2586 2571 2196 120 13 0 chr6 7889936 7890237 -181389317 - AluSx SINE Alu -7 305 1 759 293 21 45 chr6 7890237 7890327 -181389227 - HERV16 LTR ERVL -2425 2571 2489 2301 276 79 22 chr6 7890332 7892053 -181387501 - HERV16 LTR ERVL -2665 2331 401 3251 183 13 7 chr6 7892075 7892686 -181386868 - L1MB8 LINE L1 -2 6176 5562 6071 178 17 12 chr6 7892691 7893834 -181385720 + L1PA16 LINE L1 4040 5196 -970 2030 132 17 7 chr6 7893834 7894129 -181385425 + AluSq SINE Alu 1 298 -15 6071 178 17 12 chr6 7894129 7894558 -181384996 + L1PA16 LINE L1 5196 5621 -545 3840 89 10 43 chr6 7894582 7894972 -181384582 + L1PA16 LINE L1 5598 5964 -202 1839 181 3 0 chr6 7894972 7895275 -181384279 + AluJo SINE Alu 1 304 -8 3840 89 10 43 chr6 7895275 7895471 -181384083 + L1PA16 LINE L1 5964 6165 -1 2224 152 38 47 chr6 7895472 7896165 -181383389 - L1MB8 LINE L1 -606 5572 4871 282 230 54 0 chr6 7896287 7896361 -181383193 + L1P LINE L1 3703 3780 -2366 1384 86 50 10 chr6 7896450 7896648 -181382906 - AluSg/x SINE Alu -16 294 89 799 157 0 15 chr6 7896662 7896796 -181382758 - FLAM_C SINE Alu -1 132 1 299 211 26 0 chr6 7896952 7897028 -181382526 + L1M4 LINE L1 5017 5094 -1052 2001 160 31 0 chr6 7897045 7897364 -181382190 - MER7A DNA MER2_type -19 327 1 506 289 11 42 chr6 7897935 7898125 -181381429 - HERV16 LTR ERVL -4803 193 10 456 271 30 15 chr6 7898368 7898501 -181381053 + MLT1L LTR MaLR 128 262 -353 286 296 46 9 chr6 7898635 7898743 -181380811 + MLT1L LTR MaLR 496 607 -8 1409 110 8 55 chr6 7899278 7899515 -181380039 + MLT1B LTR MaLR 4 229 -161 1743 176 47 52 chr6 7899524 7899911 -181379643 - MLT1B LTR MaLR 0 390 6 833 148 0 15 chr6 7899912 7900047 -181379507 + AluJo SINE Alu 1 133 -169 1111 142 11 11 chr6 7900096 7900286 -181379268 + AluJo SINE Alu 122 311 -1 984 189 28 18 chr6 7900355 7900572 -181378982 - MER20 DNA MER1_type 0 219 1 1946 165 30 12 chr6 7901075 7901482 -181378072 - MLT1B LTR MaLR -34 433 5 227 306 47 24 chr6 7903393 7903478 -181376076 - MIR SINE MIR -147 115 29 369 253 205 18 chr6 7904032 7904198 -181375356 + MIR SINE MIR 50 246 -16 371 259 94 55 chr6 7904418 7904619 -181374935 - L2 LINE L2 -17 3296 3088 1086 257 105 34 chr6 7904696 7905268 -181374286 + MLT2F LTR ERVL 2 651 -12 2368 104 0 0 chr6 7905270 7905568 -181373986 - AluSq SINE Alu -15 298 1 346 274 170 72 chr6 7905996 7906397 -181373157 - MLT1J2 LTR MaLR -9 441 2 2372 108 0 6 chr6 7906679 7906993 -181372561 - AluSx SINE Alu 0 312 1 2317 171 23 0 chr6 7907624 7907976 -181371578 + MLT2D LTR ERVL 1 364 -50 823 85 15 0 chr6 7907976 7908106 -181371448 + (TCTA)n Simple_repeat Simple_repeat 3 134 0 2317 171 23 0 chr6 7908106 7908146 -181371408 + MLT2D LTR ERVL 364 402 -12 2310 115 0 0 chr6 7909508 7909813 -181369741 - AluSx SINE Alu -7 305 1 457 261 48 30 chr6 7910003 7910168 -181369386 + MIR3 SINE MIR 38 205 -3 241 326 7 43 chr6 7910240 7910378 -181369176 - L2 LINE L2 -7 3265 3133 3695 143 50 16 chr6 7910909 7911523 -181368031 - MER41B LTR ERV1 0 635 1 180 143 0 0 chr6 7911759 7911801 -181367753 + (T)n Simple_repeat Simple_repeat 1 42 0 2095 104 21 7 chr6 7913711 7913998 -181365556 + AluSq SINE Alu 1 291 -22 185 0 0 39 chr6 7914009 7914035 -181365519 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 837 174 43 31 chr6 7914283 7914444 -181365110 + FRAM SINE Alu 1 163 -3 248 310 106 21 chr6 7914562 7914704 -181364850 + MIR3 SINE MIR 32 185 -23 190 242 97 16 chr6 7914993 7915055 -181364499 + MIR SINE MIR 58 124 -84 1403 145 5 5 chr6 7915336 7915550 -181364004 + AluJo SINE Alu 86 299 -13 1165 136 44 29 chr6 7916332 7916538 -181363016 + MER3 DNA MER1_type 1 209 0 675 190 8 0 chr6 7917371 7917492 -181362062 + FLAM_C SINE Alu 1 122 -11 21 0 0 0 chr6 7917492 7917513 -181362041 + AT_rich Low_complexity Low_complexity 1 21 0 2842 230 56 6 chr6 7918344 7919019 -181360535 + L1ME1 LINE L1 5441 6149 -17 808 176 150 31 chr6 7919147 7919254 -181360300 - L1ME3A LINE L1 -13 6157 6064 1890 167 6 3 chr6 7919254 7919565 -181359989 + AluJb SINE Alu 1 312 0 808 176 150 31 chr6 7919565 7919684 -181359870 - L1ME3A LINE L1 -106 6064 5904 331 309 133 24 chr6 7920966 7921131 -181358423 - MIR3 SINE MIR -5 203 21 284 211 18 0 chr6 7921728 7921785 -181357769 - MLT1K LTR MaLR -20 568 511 250 282 0 68 chr6 7921785 7921831 -181357723 - LTR67 LTR ERVL -18 539 444 183 235 0 0 chr6 7921898 7921949 -181357605 + C-rich Low_complexity Low_complexity 3 53 0 2305 98 3 13 chr6 7921983 7922299 -181357255 - AluSq SINE Alu 0 313 1 375 23 0 0 chr6 7923381 7923425 -181356129 + (TAA)n Simple_repeat Simple_repeat 2 45 0 327 338 52 0 chr6 7923710 7923846 -181355708 - MIR SINE MIR -73 189 47 367 322 90 6 chr6 7924011 7924188 -181355366 - MIR SINE MIR -25 237 46 1336 158 4 58 chr6 7924293 7924553 -181355001 - AluJo SINE Alu -15 297 52 205 371 57 9 chr6 7924571 7924676 -181354878 - L2 LINE L2 -4 3268 3159 849 239 36 54 chr6 7924829 7925109 -181354445 - ORSL DNA AcHobo 0 275 1 339 106 0 0 chr6 7925275 7925322 -181354232 - AluJb SINE Alu -4 298 252 616 174 9 17 chr6 7925339 7925454 -181354100 + ORSL DNA AcHobo 151 264 -11 1737 144 0 4 chr6 7925458 7925714 -181353840 - AluJb SINE Alu -57 255 1 363 158 29 14 chr6 7925986 7926125 -181353429 + (TA)n Simple_repeat Simple_repeat 1 141 0 681 200 0 24 chr6 7926162 7926287 -181353267 - AluJb SINE Alu -184 128 7 2273 116 3 0 chr6 7927501 7927804 -181351750 - AluSx SINE Alu -8 304 1 193 305 203 34 chr6 7927929 7928047 -181351507 + L2 LINE L2 3133 3270 -2 26 0 0 0 chr6 7929469 7929495 -181350059 + AT_rich Low_complexity Low_complexity 1 26 0 2302 139 21 10 chr6 7929664 7929738 -181349816 + LTR51 LTR ERV1 1 73 -598 2231 115 3 0 chr6 7929738 7930042 -181349512 + AluSg SINE Alu 1 305 -5 2302 139 21 10 chr6 7930042 7930587 -181348967 + LTR51 LTR ERV1 73 671 0 2366 108 0 0 chr6 7930724 7931031 -181348523 + AluSx SINE Alu 1 307 -5 371 269 23 0 chr6 7931415 7931519 -181348035 - MIR SINE MIR -57 151 45 985 203 98 51 chr6 7931991 7932065 -181347489 + L1ME3A LINE L1 5862 5931 -239 2089 150 129 5 chr6 7932065 7932446 -181347108 - MSTA LTR MaLR 0 428 1 985 203 98 51 chr6 7932446 7932666 -181346888 + L1ME3A LINE L1 5931 6170 0 281 247 0 67 chr6 7933986 7934075 -181345479 - MIR SINE MIR -71 191 109 300 291 78 28 chr6 7934542 7934683 -181344871 - L2 LINE L2 -203 3069 2922 1624 196 27 46 chr6 7935083 7935408 -181344146 + MLT1A1 LTR MaLR 5 324 -41 2331 84 0 47 chr6 7935408 7935729 -181343825 - AluSq SINE Alu -7 306 1 1624 196 27 46 chr6 7935729 7935771 -181343783 + MLT1A1 LTR MaLR 324 365 0 1852 154 0 29 chr6 7935817 7936146 -181343408 - AluJo SINE Alu 0 312 1 217 340 212 17 chr6 7937179 7938061 -181341493 + L2 LINE L2 1710 2763 -551 206 299 26 0 chr6 7938169 7938246 -181341308 + L2 LINE L2 2894 2972 -300 1210 102 81 106 chr6 7938875 7939029 -181340525 - MER30 DNA MER1_type 0 230 83 2501 57 3 0 chr6 7939029 7939326 -181340228 - AluY SINE Alu -13 298 1 1210 102 81 106 chr6 7939326 7939407 -181340147 - MER30 DNA MER1_type -147 83 1 1803 185 22 27 chr6 7940241 7940608 -181338946 - MLT1A1 LTR MaLR 0 365 1 1995 268 50 23 chr6 7941401 7941964 -181337590 - MLT1E LTR MaLR 0 593 16 1523 317 125 29 chr6 7942109 7943369 -181336185 + L2 LINE L2 1618 2996 -276 373 248 108 8 chr6 7943397 7943526 -181336028 + L2 LINE L2 3158 3299 -14 261 271 60 53 chr6 7943723 7943856 -181335698 + L2 LINE L2 3132 3265 -7 362 171 13 13 chr6 7944876 7944952 -181334602 - L2 LINE L2 0 3313 3238 2004 179 6 0 chr6 7945434 7945791 -181333763 + L1MDb LINE L1 793 1151 -5392 5730 136 42 2 chr6 7945791 7946695 -181332859 + L1MC1 LINE L1 5394 6333 0 3845 204 61 75 chr6 7946688 7946887 -181332667 + L1MDb LINE L1 1110 1310 -5230 * 1242 63 0 0 chr6 7946887 7947045 -181332509 + L1PA3 LINE L1 5998 6155 0 3845 204 61 75 chr6 7947045 7947747 -181331807 + L1MDb LINE L1 1310 2021 -4519 2947 6 0 0 chr6 7947747 7948058 -181331496 + AluY SINE Alu 1 311 0 3845 204 61 75 chr6 7948058 7948222 -181331332 + L1MDb LINE L1 2021 2186 -4354 2093 138 0 3 chr6 7948222 7948518 -181331036 + AluJb SINE Alu 1 295 -17 3845 204 61 75 chr6 7948518 7948816 -181330738 + L1MDb LINE L1 2186 2455 -4085 2229 116 3 0 chr6 7949055 7949349 -181330205 - AluSq SINE Alu -18 295 1 1014 197 56 16 chr6 7949431 7949680 -181329874 - L1MC3 LINE L1 0 7785 7527 1880 79 0 0 chr6 7949709 7949938 -181329616 + AluY SINE Alu 82 310 -1 715 281 32 32 chr6 7950324 7950570 -181328984 + L2 LINE L2 2518 2763 -551 988 238 71 29 chr6 7950610 7950921 -181328633 - L1ME3A LINE L1 -5 6165 5842 767 269 88 30 chr6 7951007 7951312 -181328242 + L2 LINE L2 2818 3140 -173 1220 243 40 6 chr6 7951322 7951641 -181327913 - MLT1E2 LTR MaLR 0 626 271 321 175 225 33 chr6 7951697 7951817 -181327737 + L2 LINE L2 3171 3313 0 1727 120 7 80 chr6 7952863 7953162 -181326392 - AluJb SINE Alu -12 300 24 189 107 0 0 chr6 7954507 7954535 -181325019 + (TG)n Simple_repeat Simple_repeat 2 29 0 2360 133 17 0 chr6 7954569 7954923 -181324631 - MER46B DNA MER2_type 0 236 2 22 0 0 0 chr6 7956753 7956775 -181322779 + GC_rich Low_complexity Low_complexity 1 22 0 185 160 0 20 chr6 7957620 7957670 -181321884 + (CCG)n Simple_repeat Simple_repeat 1 49 0 222 62 0 0 chr6 7957807 7957839 -181321715 + (CAG)n Simple_repeat Simple_repeat 3 34 0 26 88 0 0 chr6 7958331 7958399 -181321155 + GC_rich Low_complexity Low_complexity 1 68 0 207 333 0 0 chr6 7959808 7959871 -181319683 + C-rich Low_complexity Low_complexity 1 63 0 433 268 28 56 chr6 7960019 7960198 -181319356 + MER5B DNA MER1_type 5 178 0 363 166 78 181 chr6 7960262 7960401 -181319153 + MER5B DNA MER1_type 6 121 -57 592 212 0 38 chr6 7960401 7960533 -181319021 - FLAM_A SINE Alu -6 127 1 363 166 78 181 chr6 7960533 7960586 -181318968 + MER5B DNA MER1_type 121 178 0 389 308 69 47 chr6 7961842 7962118 -181317436 + L2 LINE L2 3005 3286 -27 1996 128 0 29 chr6 7963428 7963734 -181315820 - AluSx SINE Alu -15 297 1 184 220 40 0 chr6 7964793 7964843 -181314711 - MIR3 SINE MIR -4 204 153 1504 161 28 46 chr6 7966101 7966425 -181313129 - L1MC1 LINE L1 0 6333 6016 2212 106 7 0 chr6 7967434 7967726 -181311828 + AluSx SINE Alu 1 294 -18 203 267 0 0 chr6 7968145 7968190 -181311364 + CT-rich Low_complexity Low_complexity 1 45 0 209 217 0 0 chr6 7968471 7968517 -181311037 + T-rich Low_complexity Low_complexity 1 46 0 395 281 131 11 chr6 7968887 7969147 -181310407 + LTR33A LTR ERVL 231 521 -2 227 303 0 0 chr6 7969268 7969344 -181310210 - L1ME1 LINE L1 -45 6121 6046 473 248 115 49 chr6 7970860 7971146 -181308408 - MER5C DNA MER1_type 0 324 20 187 206 330 10 chr6 7971139 7971236 -181308318 - MER5A DNA MER1_type -46 143 16 * 213 39 0 0 chr6 7971812 7971838 -181307716 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1735 149 14 11 chr6 7971844 7972125 -181307429 - AluJo SINE Alu -30 282 1 951 127 0 0 chr6 7972135 7972261 -181307293 - FLAM_C SINE Alu -17 126 1 298 193 35 153 chr6 7974531 7974733 -181304821 - L1MC4 LINE L1 -1 8041 7864 1946 115 39 0 chr6 7974735 7975014 -181304540 + AluSx SINE Alu 3 292 -20 627 216 58 0 chr6 7975087 7975226 -181304328 - L1ME2 LINE L1 -10 6154 6008 * 919 260 115 41 chr6 7975218 7975637 -181303917 - L1ME LINE L1 -5620 450 1 1675 175 15 4 chr6 7975825 7976099 -181303455 - AluJo SINE Alu -35 277 1 1102 129 13 0 chr6 7976350 7976505 -181303049 + AluSq SINE Alu 137 293 -20 196 374 32 11 chr6 7976744 7976934 -181302620 - L2 LINE L2 -464 2850 2657 1581 219 164 39 chr6 7977760 7978180 -181301374 + MLT1E2 LTR MaLR 51 548 -78 1998 143 3 0 chr6 7978180 7978474 -181301080 - AluJb SINE Alu -17 295 1 1581 219 164 39 chr6 7978474 7978565 -181300989 + MLT1E2 LTR MaLR 548 626 0 539 280 70 0 chr6 7978646 7978846 -181300708 + MIR SINE MIR 33 246 -16 193 331 192 0 chr6 7980311 7980441 -181299113 + MER5A DNA MER1_type 7 161 -28 * 378 306 8 8 chr6 7980356 7980480 -181299074 - MER5A DNA MER1_type -65 124 1 286 269 101 40 chr6 7982490 7982639 -181296915 - L3 LINE CR1 -114 1463 1306 765 230 133 5 chr6 7982639 7982835 -181296719 - MER58A DNA MER1_type 0 224 4 360 246 246 0 chr6 7983893 7984035 -181295519 + MER5A DNA MER1_type 13 189 0 5356 244 63 43 chr6 7984304 7984634 -181294920 - L1MEc LINE L1 -3180 3035 2713 1805 158 30 0 chr6 7984634 7984937 -181294617 - AluJo SINE Alu 0 312 1 5356 244 63 43 chr6 7984937 7985237 -181294317 - L1MEc LINE L1 -3502 2713 2421 2309 94 0 3 chr6 7985237 7985544 -181294010 - AluY SINE Alu -3 308 3 5356 244 63 43 chr6 7985544 7986718 -181292836 - L1MEc LINE L1 -3794 2421 1163 180 0 0 0 chr6 7986718 7986738 -181292816 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 5356 244 63 43 chr6 7986738 7987675 -181291879 - L1MEc LINE L1 -5052 1163 246 1926 184 115 12 chr6 7987723 7988142 -181291412 - MLT1C LTR MaLR 0 467 6 335 313 71 0 chr6 7989472 7989571 -181289983 + L2 LINE L2 3124 3229 -43 334 275 138 14 chr6 7989951 7990089 -181289465 + MIR3 SINE MIR 33 187 -21 2313 119 0 3 chr6 7990222 7990533 -181289021 - AluSx SINE Alu -2 310 1 929 193 31 0 chr6 7990593 7990754 -181288800 - FRAM SINE Alu 0 166 1 2188 106 0 3 chr6 7990982 7991296 -181288258 - AluSx SINE Alu 0 313 1 270 325 0 90 chr6 7992210 7992410 -181287144 + L2 LINE L2 3005 3186 -86 2133 107 0 73 chr6 7992423 7992750 -181286804 - AluSx SINE Alu -9 303 1 708 195 0 0 chr6 7995185 7995308 -181284246 - FLAM_A SINE Alu -10 123 1 1766 196 136 7 chr6 7996181 7996599 -181282955 - MLT1D LTR MaLR -7 498 27 1938 161 3 19 chr6 7996859 7997176 -181282378 + AluJo SINE Alu 1 312 0 206 32 32 0 chr6 7997474 7997505 -181282049 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2254 76 42 0 chr6 7997513 7997801 -181281753 - AluY SINE Alu -10 301 2 224 250 77 29 chr6 7997950 7998054 -181281500 - MER5A DNA MER1_type 0 189 81 2910 174 66 62 chr6 7998219 7998974 -181280580 - L1MCa LINE L1 -5483 943 186 519 199 133 20 chr6 7999818 7999969 -181279585 + MER5B DNA MER1_type 1 168 -10 277 290 106 37 chr6 8001176 8001313 -181278241 + MER5A DNA MER1_type 7 160 -29 453 242 73 0 chr6 8001336 8001460 -181278094 + MER5B DNA MER1_type 1 133 -45 201 296 0 0 chr6 8001721 8001765 -181277789 + MIR SINE MIR 219 262 0 543 277 19 13 chr6 8001988 8002143 -181277411 - MIR SINE MIR -84 178 23 2439 87 6 3 chr6 8002299 8002610 -181276944 + AluSx SINE Alu 1 312 0 2147 117 0 7 chr6 8004796 8005095 -181274459 + AluSx SINE Alu 1 297 -15 895 155 61 0 chr6 8005095 8005243 -181274311 + AluSg/x SINE Alu 134 290 -22 2198 156 15 51 chr6 8005307 8005718 -181273836 - MSTD LTR MaLR 0 396 1 257 135 0 0 chr6 8006498 8006535 -181273019 + 5S rRNA rRNA 2 38 -83 719 221 0 0 chr6 8007197 8007324 -181272230 - FRAM SINE Alu -30 146 20 596 274 78 4 chr6 8008808 8009038 -181270516 - MIR SINE MIR -2 260 14 237 302 147 16 chr6 8009170 8009299 -181270255 - MIR3 SINE MIR -3 205 60 2311 83 0 29 chr6 8009855 8010168 -181269386 - AluSq SINE Alu -9 304 1 2336 88 0 3 chr6 8010794 8011089 -181268465 + AluSq SINE Alu 1 294 -19 1953 132 11 0 chr6 8011222 8011539 -181268015 - AluJb SINE Alu 0 320 1 452 267 0 46 chr6 8011718 8011849 -181267705 - MIR SINE MIR -75 187 63 827 294 127 52 chr6 8012522 8012959 -181266595 - L2 LINE L2 -662 2652 2249 1883 149 30 3 chr6 8012959 8013260 -181266294 + AluSx SINE Alu 3 311 -1 827 294 127 52 chr6 8013260 8013799 -181265755 - L2 LINE L2 -1065 2249 1603 225 200 40 0 chr6 8013816 8013866 -181265688 + MIR SINE MIR 156 207 -55 224 269 0 0 chr6 8014926 8014993 -181264561 + (TG)n Simple_repeat Simple_repeat 2 68 0 189 0 0 0 chr6 8016989 8017010 -181262544 + (T)n Simple_repeat Simple_repeat 1 21 0 276 264 176 39 chr6 8019109 8019291 -181260263 - Charlie2a DNA MER1_type -1199 1663 1457 616 175 71 0 chr6 8019504 8019630 -181259924 - L1MA9 LINE L1 0 6312 6178 459 245 0 0 chr6 8019631 8019729 -181259825 - L1MA9 LINE L1 -212 6100 6003 389 269 0 37 chr6 8019786 8019894 -181259660 - Charlie2a DNA MER1_type -2715 147 44 1908 157 10 10 chr6 8020761 8021073 -181258481 + AluJb SINE Alu 1 312 0 226 333 118 36 chr6 8021926 8022419 -181257135 + L2 LINE L2 2044 2576 -738 1704 177 75 42 chr6 8022489 8022516 -181257038 - MLT2C1 LTR ERVL 0 397 372 432 0 0 0 chr6 8022516 8022564 -181256990 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 1704 177 75 42 chr6 8022564 8022920 -181256634 - MLT2C1 LTR ERVL -25 372 1 3245 159 19 9 chr6 8023669 8024242 -181255312 + L1MC1 LINE L1 5755 6333 0 1465 150 38 23 chr6 8024885 8025151 -181254403 + AluJo SINE Alu 35 304 -8 298 224 109 68 chr6 8025223 8025370 -181254184 - MIR SINE MIR -87 175 23 625 342 98 15 chr6 8026085 8026626 -181252928 - L2 LINE L2 -555 2759 2174 182 195 0 24 chr6 8028253 8028294 -181251260 + L2 LINE L2 794 833 -2481 278 313 104 7 chr6 8028854 8028998 -181250556 - MIR3 SINE MIR -33 175 18 257 255 128 11 chr6 8030015 8030109 -181249445 + MIR3 SINE MIR 93 197 -11 387 0 0 0 chr6 8030609 8030652 -181248902 + (TG)n Simple_repeat Simple_repeat 1 43 0 264 306 171 27 chr6 8033427 8033902 -181245652 - L2 LINE L2 0 3313 2715 661 184 45 39 chr6 8034243 8034422 -181245132 + MER104 DNA MER2_type 1 180 0 202 132 0 26 chr6 8034910 8034948 -181244606 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 302 315 99 0 chr6 8035159 8035270 -181244284 - L2 LINE L2 0 3272 3151 215 0 67 0 chr6 8037118 8037148 -181242406 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 286 312 18 9 chr6 8037463 8037572 -181241982 - L3b LINE CR1 -83 1500 1391 1077 154 5 56 chr6 8037746 8037804 -181241750 + MER5A DNA MER1_type 1 60 -129 1848 105 56 0 chr6 8037804 8038108 -181241446 - AluSq SINE Alu 0 319 1 1077 154 5 56 chr6 8038108 8038243 -181241311 + MER5A DNA MER1_type 60 185 -4 2621 59 0 0 chr6 8038443 8038749 -181240805 - AluY SINE Alu -5 306 1 1919 166 3 3 chr6 8039161 8039468 -181240086 + AluJo SINE Alu 1 307 -5 366 274 57 58 chr6 8040821 8040983 -181238571 - MIR3 SINE MIR -5 203 39 623 179 188 0 chr6 8043520 8043637 -181235917 + FLAM_C SINE Alu 2 140 -3 405 0 0 0 chr6 8043637 8043682 -181235872 + (TA)n Simple_repeat Simple_repeat 1 45 0 1840 148 3 67 chr6 8043872 8044203 -181235351 + AluJo SINE Alu 1 310 -2 1376 169 94 87 chr6 8044489 8044891 -181234663 - MLT1E2 LTR MaLR -211 415 11 1745 68 18 5 chr6 8045300 8045519 -181234035 + L1PA8 LINE L1 5940 6161 -11 503 255 221 5 chr6 8045838 8046042 -181233512 + MIR SINE MIR 2 249 -13 21 82 0 0 chr6 8046198 8046247 -181233307 + AT_rich Low_complexity Low_complexity 1 49 0 318 341 110 18 chr6 8046840 8047004 -181232550 - MIR SINE MIR -71 191 13 3205 40 3 5 chr6 8047898 8048270 -181231284 + L1PA5 LINE L1 5781 6151 -3 259 207 24 37 chr6 8048367 8048449 -181231105 - MIR3 SINE MIR -9 199 119 251 163 41 20 chr6 8049753 8049802 -181229752 - MER81 DNA DNA 0 114 65 229 333 0 13 chr6 8050031 8050106 -181229448 + GA-rich Low_complexity Low_complexity 2 75 0 2057 159 9 18 chr6 8051277 8051616 -181227938 - MER1B DNA MER1_type 0 337 2 704 116 132 25 chr6 8051937 8052058 -181227496 + AluJb SINE Alu 1 134 -178 416 342 27 40 chr6 8052119 8052341 -181227213 + MIR SINE MIR 42 260 -2 2279 96 3 0 chr6 8052560 8052852 -181226702 - AluSq SINE Alu -18 295 3 405 0 0 0 chr6 8053432 8053477 -181226077 + (TG)n Simple_repeat Simple_repeat 2 46 0 215 357 24 24 chr6 8053802 8053928 -181225626 - MIR SINE MIR -32 230 105 1072 266 67 49 chr6 8053981 8054744 -181224810 - L2 LINE L2 -85 3228 2451 1301 176 160 27 chr6 8055571 8055833 -181223721 + AluJo SINE Alu 2 298 -4 2307 102 3 6 chr6 8055977 8056290 -181223264 + AluSq SINE Alu 1 312 -1 403 271 41 16 chr6 8059161 8059283 -181220271 - L2 LINE L2 -6 3266 3142 234 227 0 0 chr6 8059806 8059850 -181219704 + CT-rich Low_complexity Low_complexity 2 45 0 1818 164 0 7 chr6 8059960 8060253 -181219301 + AluJo SINE Alu 1 291 -21 313 173 0 0 chr6 8060868 8060920 -181218634 - L2 LINE L2 -8 3305 3254 2476 124 37 8 chr6 8061108 8061462 -181218092 - THE1B LTR MaLR 0 364 1 2913 172 29 11 chr6 8061489 8062013 -181217541 + L1MB5 LINE L1 5640 6172 -2 320 296 136 16 chr6 8062467 8062592 -181216962 - L2 LINE L2 -7 3265 3126 2078 125 101 18 chr6 8062768 8063105 -181216449 + MLT1A1 LTR MaLR 1 365 0 838 225 73 0 chr6 8063692 8063883 -181215671 + MER3 DNA MER1_type 5 209 0 206 301 87 48 chr6 8063960 8064166 -181215388 - L2 LINE L2 -926 2388 2175 * 219 262 43 92 chr6 8064148 8064289 -181215265 + MIR SINE MIR 79 212 -50 717 154 22 66 chr6 8065081 8065217 -181214337 + FLAM_A SINE Alu 4 133 0 400 303 65 40 chr6 8065222 8065499 -181214055 + L1MEd LINE L1 948 1231 -4888 2064 50 88 0 chr6 8065644 8065927 -181213627 - AluY SINE Alu 0 306 1 1799 131 13 26 chr6 8066365 8066670 -181212884 - AluSx SINE Alu -11 301 1 21 0 0 0 chr6 8066732 8066753 -181212801 + AT_rich Low_complexity Low_complexity 1 21 0 1047 230 21 60 chr6 8066850 8067185 -181212369 + L1MD2 LINE L1 6028 6349 -10 481 288 157 37 chr6 8067889 8068013 -181211541 + L1M4 LINE L1 3223 3331 -2815 2254 105 19 0 chr6 8068013 8068328 -181211226 + L1PB1 LINE L1 5828 6148 -3 481 288 157 37 chr6 8068328 8068578 -181210976 + L1M4 LINE L1 3331 3642 -2504 1732 145 59 31 chr6 8068584 8068908 -181210646 + MER44D DNA MER2_type 1 603 -6 264 231 13 128 chr6 8069114 8069193 -181210361 - L1M4 LINE L1 -2045 4101 4047 2674 40 0 0 chr6 8069193 8069495 -181210059 + AluY SINE Alu 1 302 -9 264 231 13 128 chr6 8069495 8069571 -181209983 - L1M4 LINE L1 -2099 4047 3964 926 158 7 0 chr6 8069715 8069861 -181209693 - FRAM SINE Alu -30 146 1 3556 161 28 5 chr6 8069863 8070498 -181209056 - L1MB3 LINE L1 -44 6139 5490 213 200 60 0 chr6 8072595 8072645 -181206909 + CT-rich Low_complexity Low_complexity 4 56 0 611 225 86 91 chr6 8072647 8073177 -181206377 - MLT1F1 LTR MaLR 0 567 84 249 108 0 0 chr6 8073950 8073987 -181205567 + (T)n Simple_repeat Simple_repeat 1 37 0 848 113 60 65 chr6 8074413 8074581 -181204973 - L1MA9 LINE L1 0 6312 6146 1296 193 35 0 chr6 8074585 8074839 -181204715 - L1MA9 LINE L1 -322 5990 5728 203 265 92 20 chr6 8075304 8075402 -181204152 - MIR SINE MIR -65 197 93 1123 239 123 106 chr6 8078526 8079233 -181200321 + LTR8A LTR ERV1 2 720 -7 669 302 90 18 chr6 8080015 8080402 -181199152 - HsTC2 DNA Tc2 -1007 891 477 291 235 0 0 chr6 8080390 8080458 -181199096 - HsTC2 DNA Tc2 -1599 299 232 * 1303 93 0 0 chr6 8080659 8080842 -181198712 - AluY SINE Alu 0 311 129 317 198 37 0 chr6 8080863 8080944 -181198610 - L1MB4 LINE L1 -1 6179 6096 2823 238 89 26 chr6 8081379 8082485 -181197069 - L1M4 LINE L1 -1215 4931 3757 1633 172 3 17 chr6 8082820 8083111 -181196443 + AluJo SINE Alu 2 288 -24 23 54 0 0 chr6 8083111 8083148 -181196406 + AT_rich Low_complexity Low_complexity 1 37 0 225 268 0 93 chr6 8083580 8083677 -181195877 - L1MEc LINE L1 -6142 254 167 1867 135 24 0 chr6 8085044 8085340 -181194214 + AluSx SINE Alu 1 303 -9 1053 164 22 6 chr6 8085784 8085967 -181193587 + MER5A DNA MER1_type 4 189 0 767 167 56 167 chr6 8085971 8086091 -181193463 + MIR SINE MIR 20 95 -167 1572 142 127 0 chr6 8086091 8086359 -181193195 - AluJb SINE Alu 0 302 1 767 167 56 167 chr6 8086359 8086507 -181193047 + MIR SINE MIR 95 258 -4 252 0 0 0 chr6 8086652 8086680 -181192874 + (A)n Simple_repeat Simple_repeat 1 28 0 2671 29 0 0 chr6 8087136 8087447 -181192107 - AluYa5 SINE Alu 0 311 1 1758 161 0 7 chr6 8088638 8088936 -181190618 - AluJb SINE Alu -16 296 1 258 280 174 8 chr6 8089133 8089265 -181190289 + MIR SINE MIR 47 200 -62 217 378 49 6 chr6 8089442 8089606 -181189948 - MIR SINE MIR -69 193 23 360 291 94 49 chr6 8090601 8090804 -181188750 + MIR SINE MIR 1 212 -50 415 95 0 0 chr6 8091594 8091657 -181187897 + Alu SINE Alu 240 302 -10 1028 276 97 23 chr6 8093448 8093542 -181186012 - MLT1K LTR MaLR 0 588 502 2298 94 0 0 chr6 8093542 8093851 -181185703 - AluY SINE Alu -2 309 1 1028 276 97 23 chr6 8093851 8094198 -181185356 - MLT1K LTR MaLR -86 502 114 1868 131 28 3 chr6 8094290 8094580 -181184974 + AluSx SINE Alu 1 297 -15 374 259 238 21 chr6 8094779 8094972 -181184582 + MIR SINE MIR 10 244 -18 2057 121 7 3 chr6 8097418 8097724 -181181830 - AluSq SINE Alu -6 307 1 203 81 54 0 chr6 8099418 8099455 -181180099 + CT-rich Low_complexity Low_complexity 5 43 0 1985 104 7 4 chr6 8101201 8101481 -181178073 - AluSx SINE Alu -31 281 1 214 300 38 12 chr6 8102414 8102494 -181177060 - MER5A DNA MER1_type -65 124 43 1685 252 80 74 chr6 8103306 8103353 -181176201 - MER21B LTR ERV1 -106 757 712 1655 193 23 0 chr6 8103353 8103658 -181175896 - AluJo SINE Alu 0 312 1 1685 252 80 74 chr6 8103658 8104351 -181175203 - MER21B LTR ERV1 -151 712 13 700 210 40 65 chr6 8104613 8104861 -181174693 - MLT1J2 LTR MaLR -189 261 20 376 337 30 45 chr6 8104863 8105026 -181174528 + L2 LINE L2 2879 3040 -273 1643 140 29 32 chr6 8105026 8105334 -181174220 + AluJo SINE Alu 1 307 -5 376 337 30 45 chr6 8105334 8105372 -181174182 + L2 LINE L2 3040 3077 -236 2724 196 12 55 chr6 8105432 8105946 -181173608 - MLT2B3 LTR ERVL -2 552 64 1524 181 36 0 chr6 8105946 8106227 -181173327 + AluJo SINE Alu 2 292 -20 2724 196 12 55 chr6 8106227 8106289 -181173265 - MLT2B3 LTR ERVL -490 64 1 570 268 75 36 chr6 8106803 8107174 -181172380 - L1MEd LINE L1 -4869 1250 967 376 317 81 43 chr6 8107194 8107380 -181172174 - L1MEd LINE L1 -5078 1041 849 220 0 0 79 chr6 8107448 8107486 -181172068 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2153 111 0 3 chr6 8107893 8108190 -181171364 + AluSx SINE Alu 5 300 -12 187 319 42 59 chr6 8108391 8108510 -181171044 + L2 LINE L2 2636 2752 -562 210 246 148 0 chr6 8109512 8109573 -181169981 + L2 LINE L2 3244 3313 0 404 304 56 0 chr6 8110330 8110455 -181169099 + MIR SINE MIR 20 151 -111 274 313 36 27 chr6 8114099 8114211 -181165343 - MER5A DNA MER1_type -71 118 6 292 284 60 66 chr6 8115861 8115998 -181163556 - MIR SINE MIR -61 147 15 282 298 128 21 chr6 8118567 8118708 -181160846 + L2 LINE L2 3158 3313 0 259 352 193 0 chr6 8121284 8121429 -181158125 - MIR SINE MIR -13 249 77 1504 257 82 23 chr6 8122436 8123008 -181156546 + L1MC5 LINE L1 6927 7532 -429 2107 118 53 28 chr6 8123067 8123422 -181156132 + THE1B LTR MaLR 1 364 0 297 250 133 39 chr6 8123494 8123622 -181155932 + L1ME3A LINE L1 6031 6170 0 1262 184 93 25 chr6 8124670 8124948 -181154606 - AluJb SINE Alu -11 301 5 1186 163 62 15 chr6 8125025 8125377 -181154177 - Tigger1 DNA MER2_type 0 2418 1 614 184 0 0 chr6 8126192 8126290 -181153264 + AluJ/FLAM SINE Alu 2 99 -213 1468 153 15 23 chr6 8126291 8126552 -181153002 + AluJo SINE Alu 30 288 -24 386 298 50 73 chr6 8127405 8127707 -181151847 + L1ME LINE L1 5511 5805 -316 1937 123 24 0 chr6 8128617 8128909 -181150645 - AluSq SINE Alu -14 299 1 312 70 0 0 chr6 8130072 8130115 -181149439 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 1804 176 49 9 chr6 8131162 8131508 -181148046 - MLT1A1 LTR MaLR 0 365 6 1926 175 62 27 chr6 8132399 8132850 -181146704 + MLT1C LTR MaLR 1 467 0 274 289 103 57 chr6 8135528 8135791 -181143763 + L2 LINE L2 2809 3083 -189 1705 152 18 7 chr6 8136515 8136798 -181142756 + AluJo SINE Alu 9 294 -18 2133 104 3 10 chr6 8136805 8137114 -181142440 + AluSg SINE Alu 1 307 -3 2311 83 0 0 chr6 8138556 8138856 -181140698 + AluSc SINE Alu 2 301 -8 1431 185 3 52 chr6 8139094 8139418 -181140136 + AluJo SINE Alu 5 312 0 29 60 0 0 chr6 8140790 8140840 -181138714 + GC_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr6 8140973 8141002 -181138552 + GC_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr6 8141188 8141208 -181138346 + (CCG)n Simple_repeat Simple_repeat 2 21 0 24 32 0 0 chr6 8141212 8141243 -181138311 + GC_rich Low_complexity Low_complexity 1 31 0 200 248 0 70 chr6 8141344 8141473 -181138081 + C-rich Low_complexity Low_complexity 3 122 0 189 367 20 10 chr6 8142396 8142494 -181137060 + L2 LINE L2 2418 2516 -798 974 312 204 32 chr6 8142749 8143914 -181135640 + L2 LINE L2 107 1472 -1842 1984 189 60 35 chr6 8143982 8144464 -181135090 + MLT1D LTR MaLR 10 503 -2 272 254 45 55 chr6 8144466 8144576 -181134978 + L2 LINE L2 1567 1675 -1639 842 286 205 9 chr6 8144582 8145148 -181134406 + L2 LINE L2 1782 2458 -856 547 155 0 0 chr6 8145158 8145242 -181134312 - AluS SINE Alu -227 85 2 441 297 141 47 chr6 8145285 8146051 -181133503 + L2 LINE L2 2462 3312 -1 233 219 0 109 chr6 8146521 8146558 -181132996 + L2 LINE L2 3216 3245 -27 2272 138 36 17 chr6 8146558 8146914 -181132640 + THE1B LTR MaLR 1 363 -1 233 219 0 109 chr6 8146914 8146940 -181132614 + L2 LINE L2 3245 3272 0 2150 107 0 0 chr6 8147108 8147398 -181132156 - AluSg SINE Alu -20 290 1 251 268 89 71 chr6 8148649 8148761 -181130793 + MER5B DNA MER1_type 5 118 -60 225 287 76 80 chr6 8148945 8149182 -181130372 - LTR67 LTR ERVL -138 419 184 1972 149 3 0 chr6 8149316 8149618 -181129936 - AluSq SINE Alu -10 303 1 245 276 71 0 chr6 8149699 8149797 -181129757 + MER103 DNA DNA 59 163 -3 843 274 126 26 chr6 8149971 8150321 -181129233 - L2 LINE L2 -4 3309 2925 3813 263 72 77 chr6 8150346 8152133 -181127421 - L2 LINE L2 -527 2787 1011 281 357 80 23 chr6 8152247 8152676 -181126878 + L2 LINE L2 2533 2983 -289 238 200 0 29 chr6 8152736 8152806 -181126748 - LTR66 LTR ERVL -142 468 401 486 120 0 0 chr6 8152825 8152900 -181126654 + (CA)n Simple_repeat Simple_repeat 2 76 0 1527 141 24 0 chr6 8152900 8153149 -181126405 - Tigger2 DNA MER2_type -3 2715 2461 3917 127 29 8 chr6 8153206 8153822 -181125732 - Tigger2 DNA MER2_type -1964 754 126 328 205 152 41 chr6 8153937 8154126 -181125428 + L1P4 LINE L1 5575 5796 -370 329 311 49 25 chr6 8154150 8154272 -181125282 + MIR SINE MIR 12 136 -126 4106 244 71 61 chr6 8154332 8156031 -181123523 + L1MCc LINE L1 20 1745 -5069 351 0 0 0 chr6 8156031 8156070 -181123484 + (CA)n Simple_repeat Simple_repeat 2 40 0 4106 244 71 61 chr6 8156070 8156255 -181123299 + L1MCc LINE L1 1745 1927 -4887 39269 77 11 9 chr6 8156261 8162388 -181117166 + L1PA6 LINE L1 12 6152 -2 31 26 0 0 chr6 8162741 8162779 -181116775 + AT_rich Low_complexity Low_complexity 1 38 0 2277 192 8 3 chr6 8163036 8163417 -181116137 - MER70A LTR ERVL 0 472 90 912 217 12 0 chr6 8163412 8163573 -181115981 - MER70B LTR ERVL -415 163 1 * 641 205 155 0 chr6 8163722 8163883 -181115671 - MER5A DNA MER1_type 0 189 4 622 329 79 56 chr6 8163924 8164428 -181115126 - HAL1b LINE L1 -756 592 77 2260 145 17 3 chr6 8165374 8165733 -181113821 - MLT1A1 LTR MaLR 0 365 2 2060 125 0 7 chr6 8166043 8166346 -181113208 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr6 8166911 8166933 -181112621 + AT_rich Low_complexity Low_complexity 1 22 0 1988 136 13 0 chr6 8167033 8167342 -181112212 - AluSq SINE Alu 0 313 1 1975 105 34 3 chr6 8168243 8168539 -181111015 - AluSx SINE Alu -7 305 1 1286 156 93 14 chr6 8168648 8168954 -181110600 + MLT1B LTR MaLR 1 386 -4 432 106 0 0 chr6 8169104 8169170 -181110384 - Alu SINE Alu -10 301 236 985 93 6 28 chr6 8171053 8171235 -181108319 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 184 270 0 0 chr6 8171906 8171943 -181107611 + L2 LINE L2 3180 3216 -97 2872 127 7 25 chr6 8171984 8172417 -181107137 - MSTC LTR MaLR -3 425 1 376 226 75 50 chr6 8172672 8172831 -181106723 - MER46C DNA MER2_type -174 164 2 260 303 56 56 chr6 8173183 8173325 -181106229 - MIR SINE MIR -93 169 28 2029 113 19 32 chr6 8173434 8173745 -181105809 + THE1B LTR MaLR 1 307 -57 38205 44 5 0 chr6 8173745 8179849 -181099705 - L1PA4 LINE L1 -9 6146 11 480 129 14 0 chr6 8179854 8179924 -181099630 + THE1B LTR MaLR 294 364 0 24 32 0 0 chr6 8180862 8180893 -181098661 + AT_rich Low_complexity Low_complexity 1 31 0 2130 96 7 0 chr6 8180949 8181265 -181098289 - AluSx SINE Alu 0 318 1 22 0 0 0 chr6 8181375 8181397 -181098157 + AT_rich Low_complexity Low_complexity 1 22 0 839 128 0 8 chr6 8182514 8182639 -181096915 - FLAM_C SINE Alu -19 124 1 260 331 105 0 chr6 8182802 8182926 -181096628 - L2 LINE L2 -2823 491 355 1675 165 35 3 chr6 8183267 8183552 -181096002 - AluJo SINE Alu -18 294 1 27 0 0 0 chr6 8183849 8183876 -181095678 + AT_rich Low_complexity Low_complexity 1 27 0 1706 159 37 0 chr6 8184919 8185190 -181094364 + AluJo SINE Alu 1 281 -31 189 107 0 0 chr6 8185191 8185219 -181094335 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 806 214 6 12 chr6 8185424 8185592 -181093962 - FRAM SINE Alu -6 170 4 2267 92 0 7 chr6 8186383 8186686 -181092868 + AluSx SINE Alu 1 301 -11 308 250 205 19 chr6 8186756 8186912 -181092642 + L1ME4a LINE L1 5699 5883 -238 460 206 89 7 chr6 8187008 8187154 -181092400 + L1ME4a LINE L1 5940 6097 -24 936 82 8 0 chr6 8187247 8187369 -181092185 + AluSq/x SINE Alu 2 124 -189 181 302 93 93 chr6 8188879 8189008 -181090546 + MIR SINE MIR 16 144 -64 2082 115 37 0 chr6 8189320 8189616 -181089938 - AluSx SINE Alu -5 307 1 31 44 0 0 chr6 8189662 8189707 -181089847 + AT_rich Low_complexity Low_complexity 1 45 0 283 295 0 0 chr6 8189991 8190052 -181089502 + (CA)n Simple_repeat Simple_repeat 1 61 0 1772 99 0 0 chr6 8190255 8190478 -181089076 - AluSg/x SINE Alu -15 297 75 2898 6 0 0 chr6 8190976 8191287 -181088267 + AluYa5 SINE Alu 1 311 0 1014 153 74 60 chr6 8191502 8191718 -181087836 - MER20 DNA MER1_type 0 219 1 3339 164 7 17 chr6 8192096 8192225 -181087329 - L1MB3 LINE L1 0 6183 6054 2302 101 0 22 chr6 8192225 8192543 -181087011 - AluSq SINE Alu -2 311 1 3339 164 7 17 chr6 8192543 8192998 -181086556 - L1MB3 LINE L1 -129 6054 5605 22 0 0 0 chr6 8193723 8193745 -181085809 + AT_rich Low_complexity Low_complexity 1 22 0 2317 100 0 3 chr6 8194290 8194590 -181084964 + AluSq SINE Alu 1 299 -14 365 289 147 26 chr6 8195101 8195333 -181084221 - MIR SINE MIR -1 261 2 239 357 56 16 chr6 8196014 8196140 -181083414 + MIR SINE MIR 20 150 -112 201 39 0 0 chr6 8196452 8196478 -181083076 + (TG)n Simple_repeat Simple_repeat 2 27 0 764 96 0 0 chr6 8196478 8196572 -181082982 - AluSg/x SINE Alu -26 284 191 1947 122 16 48 chr6 8196960 8197271 -181082283 - AluSx SINE Alu -7 305 5 2177 125 0 0 chr6 8197521 8197816 -181081738 - AluSx SINE Alu -17 295 1 2228 119 0 0 chr6 8199286 8199581 -181079973 + AluSx SINE Alu 1 295 -17 30 45 0 0 chr6 8200555 8200599 -181078955 + AT_rich Low_complexity Low_complexity 1 44 0 2243 132 0 0 chr6 8200616 8200927 -181078627 - AluSx SINE Alu -1 311 1 404 278 161 42 chr6 8201069 8201692 -181077862 - L1MEd LINE L1 -3219 2910 2186 2407 75 0 3 chr6 8201692 8201986 -181077568 + AluSc SINE Alu 1 293 -16 404 278 161 42 chr6 8201986 8202093 -181077461 - L1MEd LINE L1 -3943 2186 2093 1194 256 95 53 chr6 8202482 8203312 -181076242 - L1MEd LINE L1 -4752 1558 660 186 204 68 0 chr6 8203631 8203675 -181075879 + L2 LINE L2 361 407 -2907 922 241 129 38 chr6 8203700 8204041 -181075513 + MLT1A2 LTR MaLR 1 372 -2 207 0 0 0 chr6 8204908 8204931 -181074623 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1638 99 0 0 chr6 8205212 8205424 -181074130 - AluSq SINE Alu -6 307 96 767 144 23 38 chr6 8205438 8205570 -181073984 - AluSq/x SINE Alu -181 131 2 710 117 27 0 chr6 8206273 8206384 -181073170 + L1MA7 LINE L1 6173 6286 -5 963 125 0 29 chr6 8206389 8206525 -181073029 + FLAM_C SINE Alu 2 133 0 24 32 0 0 chr6 8207335 8207366 -181072188 + AT_rich Low_complexity Low_complexity 1 31 0 2081 119 16 19 chr6 8207858 8208169 -181071385 + AluSx SINE Alu 1 310 -2 1324 95 105 0 chr6 8209571 8209761 -181069793 + L1PB1 LINE L1 5938 6147 -4 195 42 0 0 chr6 8211030 8211054 -181068500 + (TG)n Simple_repeat Simple_repeat 2 25 0 241 293 0 0 chr6 8211225 8211283 -181068271 + CT-rich Low_complexity Low_complexity 5 62 0 1342 265 164 20 chr6 8211957 8212554 -181067000 + L2 LINE L2 1662 2344 -970 530 134 34 92 chr6 8212543 8212662 -181066892 + MIR SINE MIR 106 217 -45 * 2410 84 0 3 chr6 8213850 8214148 -181065406 + AluSc SINE Alu 1 297 -12 607 162 45 18 chr6 8214858 8214969 -181064585 + FLAM_A SINE Alu 24 137 -5 352 272 130 19 chr6 8216325 8216487 -181063067 - MIR SINE MIR -10 252 73 474 314 100 18 chr6 8216501 8216721 -181062833 + MIR SINE MIR 15 252 -10 509 301 159 40 chr6 8217924 8217956 -181061598 + MIR SINE MIR 3 30 -232 2134 137 0 0 chr6 8217956 8218262 -181061292 + AluSx SINE Alu 1 306 -6 509 301 159 40 chr6 8218262 8218455 -181061099 + MIR SINE MIR 30 255 -7 1943 153 13 7 chr6 8219189 8219497 -181060057 - AluJo SINE Alu -2 310 1 662 281 93 39 chr6 8219924 8220360 -181059194 + L1MC4a LINE L1 5481 5937 -227 2367 79 10 0 chr6 8220484 8220776 -181058778 - AluY SINE Alu -16 295 1 30 59 0 0 chr6 8222310 8222361 -181057193 + AT_rich Low_complexity Low_complexity 1 51 0 940 194 0 0 chr6 8222434 8222594 -181056960 + MER3 DNA MER1_type 1 160 -49 2290 106 3 3 chr6 8222765 8223076 -181056478 + AluSq SINE Alu 1 311 -2 2407 77 3 6 chr6 8227771 8228084 -181051470 - AluSp SINE Alu -1 312 1 380 298 17 15 chr6 8228320 8228461 -181051093 + MIR3 SINE MIR 56 196 -12 1893 267 117 66 chr6 8229358 8229614 -181049940 + L1ME3A LINE L1 807 1048 -5081 2272 117 3 0 chr6 8229614 8229921 -181049633 + AluSx SINE Alu 1 308 -4 1893 267 117 66 chr6 8229921 8230686 -181048868 + L1ME3A LINE L1 1048 1772 -4357 2159 112 7 0 chr6 8230686 8230981 -181048573 - AluSx SINE Alu -15 297 1 1893 267 117 66 chr6 8230981 8231232 -181048322 + L1ME3A LINE L1 1772 2009 -4120 2305 103 3 6 chr6 8231232 8231543 -181048011 - AluSp SINE Alu -3 310 1 1893 267 117 66 chr6 8231543 8232849 -181046705 + L1ME3A LINE L1 2009 3565 -2564 1681 268 66 29 chr6 8232857 8233416 -181046138 - MLT1E LTR MaLR -13 580 1 530 233 74 81 chr6 8233418 8233689 -181045865 + L1ME3A LINE L1 3562 3830 -2299 * 1982 250 48 67 chr6 8233688 8234529 -181045025 + L1ME3A LINE L1 5276 6100 -53 199 414 69 0 chr6 8234560 8234676 -181044878 - L2 LINE L2 -28 3244 3121 2775 148 16 20 chr6 8234806 8235253 -181044301 + MER65A LTR ERV1 1 445 0 2884 102 53 12 chr6 8235287 8235698 -181043856 - MSTA LTR MaLR 0 428 1 2208 129 0 0 chr6 8236207 8236517 -181043037 + AluSx SINE Alu 1 310 -2 1836 177 32 0 chr6 8236521 8236832 -181042722 + MLT1A1 LTR MaLR 45 365 0 307 294 92 9 chr6 8237441 8237550 -181042004 + MER94 DNA DNA 16 133 -1 2791 157 42 13 chr6 8239225 8239697 -181039857 + MER66B LTR ERV1 1 486 0 1462 203 65 15 chr6 8240176 8240247 -181039307 - MER2 DNA MER2_type -2 342 276 2277 111 0 13 chr6 8240247 8240554 -181039000 + AluSg SINE Alu 1 303 -7 1462 203 65 15 chr6 8240554 8240807 -181038747 - MER2 DNA MER2_type -68 276 2 21 57 0 0 chr6 8241839 8241874 -181037680 + AT_rich Low_complexity Low_complexity 1 35 0 2485 156 2 44 chr6 8242195 8242624 -181036930 + MER47B DNA MER2_type 8 418 0 1256 156 5 18 chr6 8243086 8243304 -181036250 - MSTB LTR MaLR 0 426 212 * 1601 258 48 50 chr6 8243292 8243808 -181035746 - MER21B LTR ERV1 -348 515 1 199 79 53 0 chr6 8244483 8244521 -181035033 + T-rich Low_complexity Low_complexity 3 42 0 577 282 95 26 chr6 8244603 8244876 -181034678 - L2 LINE L2 -1 3312 3021 195 129 0 0 chr6 8245190 8245221 -181034333 + (TCTCCC)n Simple_repeat Simple_repeat 5 35 0 342 262 47 19 chr6 8246280 8246387 -181033167 - L3 LINE CR1 -125 1452 1343 181 273 78 26 chr6 8246508 8246585 -181032969 - L3 LINE CR1 -410 1167 1087 2157 107 0 0 chr6 8246993 8247273 -181032281 - AluSx SINE Alu -32 280 1 309 309 190 4 chr6 8247275 8247453 -181032101 - MIR SINE MIR -37 225 9 1838 156 102 15 chr6 8247479 8247813 -181031741 - MLT1A1 LTR MaLR -2 363 1 631 203 55 1 chr6 8248109 8248252 -181031302 - L1ME2 LINE L1 -2 6332 6022 2056 213 20 20 chr6 8248254 8248710 -181030844 - L1ME2 LINE L1 -244 5922 5467 21 0 0 0 chr6 8248781 8248802 -181030752 + AT_rich Low_complexity Low_complexity 1 21 0 2266 84 0 3 chr6 8248804 8249112 -181030442 + AluY SINE Alu 1 307 0 2202 143 37 69 chr6 8249834 8250108 -181029446 - L1MA9 LINE L1 0 6312 6058 1882 116 60 28 chr6 8250108 8250392 -181029162 - AluSx SINE Alu -19 293 1 2202 143 37 69 chr6 8250392 8250580 -181028974 - L1MA9 LINE L1 -254 6058 5865 544 209 59 44 chr6 8250580 8250834 -181028720 - L1ME2 LINE L1 -733 5445 5189 1028 150 12 0 chr6 8250870 8251037 -181028517 + AluJb SINE Alu 128 296 -16 650 199 23 0 chr6 8251076 8251207 -181028347 - L1MA10 LINE L1 -10 6324 6191 512 157 41 75 chr6 8251214 8251361 -181028193 - L1ME2 LINE L1 -960 5186 5045 22 70 0 0 chr6 8251521 8251564 -181027990 + AT_rich Low_complexity Low_complexity 1 43 0 361 292 94 94 chr6 8251624 8251652 -181027902 + L2 LINE L2 3077 3104 -209 3139 144 49 103 chr6 8251652 8251726 -181027828 + MER73 LTR ERVL 1 77 -567 2291 50 0 0 chr6 8251726 8252003 -181027551 + AluY SINE Alu 1 277 -34 333 0 0 0 chr6 8252004 8252041 -181027513 + (CA)n Simple_repeat Simple_repeat 1 37 0 3139 144 49 103 chr6 8252041 8252396 -181027158 + MER73 LTR ERVL 77 384 -260 2032 125 0 39 chr6 8252396 8252708 -181026846 + AluSx SINE Alu 1 300 -12 3139 144 49 103 chr6 8252708 8252953 -181026601 + MER73 LTR ERVL 384 641 -3 361 292 94 94 chr6 8252953 8253157 -181026397 + L2 LINE L2 3103 3309 -4 1906 129 48 14 chr6 8253750 8254044 -181025510 - AluSg SINE Alu -6 304 1 2416 92 0 13 chr6 8254722 8255038 -181024516 + AluSx SINE Alu 1 312 0 2670 172 42 12 chr6 8255385 8255422 -181024132 - L1MA9 LINE L1 -5 6307 6273 2418 100 0 0 chr6 8255422 8255732 -181023822 + AluSg SINE Alu 1 310 0 2670 172 42 12 chr6 8255732 8256194 -181023360 - L1MA9 LINE L1 -39 6273 5793 265 291 20 20 chr6 8256643 8256794 -181022760 + (TA)n Simple_repeat Simple_repeat 1 151 0 324 0 0 0 chr6 8256805 8256841 -181022713 + (CA)n Simple_repeat Simple_repeat 2 37 0 2098 108 7 14 chr6 8256868 8257165 -181022389 - AluSx SINE Alu -16 296 2 467 199 89 7 chr6 8257258 8257404 -181022150 - L1ME4a LINE L1 -24 6097 5940 310 250 205 19 chr6 8257500 8257656 -181021898 - L1ME4a LINE L1 -238 5883 5699 2259 93 0 7 chr6 8257726 8258028 -181021526 - AluSx SINE Alu -12 300 1 806 214 6 12 chr6 8258819 8258987 -181020567 + FRAM SINE Alu 4 170 -6 189 107 0 0 chr6 8259192 8259220 -181020334 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 1706 159 37 0 chr6 8259221 8259492 -181020062 - AluJo SINE Alu -31 281 1 27 0 0 0 chr6 8260534 8260561 -181018993 + AT_rich Low_complexity Low_complexity 1 27 0 1675 165 35 3 chr6 8260858 8261143 -181018411 + AluJo SINE Alu 1 294 -18 260 331 105 0 chr6 8261484 8261608 -181017946 + L2 LINE L2 355 491 -2823 839 128 0 8 chr6 8261771 8261896 -181017658 + FLAM_C SINE Alu 1 124 -19 2131 96 7 0 chr6 8263145 8263461 -181016093 + AluSx SINE Alu 1 318 0 23 33 0 0 chr6 8263517 8263547 -181016007 + AT_rich Low_complexity Low_complexity 1 30 0 480 129 14 0 chr6 8264485 8264555 -181014999 - THE1B LTR MaLR 0 364 294 43915 46 6 1 chr6 8264560 8270664 -181008890 + L1PA4 LINE L1 11 6144 -11 2012 115 19 32 chr6 8270664 8270978 -181008576 - THE1B LTR MaLR -54 310 1 236 310 56 56 chr6 8271087 8271229 -181008325 + MIR SINE MIR 28 169 -93 404 226 75 50 chr6 8271581 8271740 -181007814 + MER46C DNA MER2_type 2 164 -174 3018 127 7 25 chr6 8271995 8272428 -181007126 + MSTC LTR MaLR 1 425 -3 182 270 0 0 chr6 8272469 8272506 -181007048 - L2 LINE L2 -97 3216 3180 883 117 6 28 chr6 8273176 8273356 -181006198 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 448 106 0 0 chr6 8275234 8275300 -181004254 + Alu SINE Alu 237 302 -10 1261 149 91 15 chr6 8275450 8275756 -181003798 - MLT1B LTR MaLR -4 386 1 2074 98 34 10 chr6 8275865 8276160 -181003394 + AluSx SINE Alu 1 302 -10 2091 136 13 0 chr6 8277065 8277374 -181002180 + AluSq SINE Alu 1 313 0 22 0 0 0 chr6 8277485 8277507 -181002047 + AT_rich Low_complexity Low_complexity 1 22 0 2185 122 0 7 chr6 8278071 8278374 -181001180 - AluSx SINE Alu -11 301 1 2378 145 17 3 chr6 8278684 8279043 -181000511 + MLT1A1 LTR MaLR 2 365 0 492 343 72 38 chr6 8280046 8280492 -180999062 + HAL1b LINE L1 132 592 -756 639 192 160 0 chr6 8280538 8280694 -180998860 + MER5A DNA MER1_type 9 189 0 902 217 12 0 chr6 8280843 8281004 -180998550 + MER70A LTR ERVL 1 163 -309 * 2233 192 8 3 chr6 8280999 8281380 -180998174 + MER70A LTR ERVL 90 472 0 31 26 0 0 chr6 8281637 8281675 -180997879 + AT_rich Low_complexity Low_complexity 1 38 0 39072 77 13 11 chr6 8282029 8288155 -180991399 - L1PA6 LINE L1 -2 6152 12 4021 245 70 61 chr6 8288161 8288346 -180991208 - L1MCc LINE L1 -4887 1536 1354 243 0 0 0 chr6 8288346 8288373 -180991181 + (TG)n Simple_repeat Simple_repeat 2 28 0 4021 245 70 61 chr6 8288373 8290074 -180989480 - L1MCc LINE L1 -5069 1354 20 316 311 49 25 chr6 8290133 8290255 -180989299 - MIR SINE MIR -126 136 12 339 205 152 41 chr6 8290279 8290468 -180989086 - L1P4 LINE L1 -370 5796 5575 3968 127 29 8 chr6 8290583 8291199 -180988355 + Tigger2 DNA MER2_type 126 754 -1964 1549 141 24 0 chr6 8291256 8291505 -180988049 + Tigger2 DNA MER2_type 2461 2715 -3 345 233 0 0 chr6 8291509 8291599 -180987955 + (TA)n Simple_repeat Simple_repeat 1 90 0 250 176 0 54 chr6 8291599 8291673 -180987881 + LTR66 LTR ERVL 399 468 -142 301 285 15 36 chr6 8291721 8291858 -180987696 - L2 LINE L2 -280 2992 2859 464 277 118 40 chr6 8292473 8292714 -180986840 - MIR SINE MIR 0 262 3 310 185 0 0 chr6 8292917 8292971 -180986583 - L2 LINE L2 -2 3270 3217 199 261 54 63 chr6 8292984 8293095 -180986459 + MIR SINE MIR 107 216 -46 2221 90 38 0 chr6 8293161 8293449 -180986105 + AluSx SINE Alu 1 299 -13 191 255 0 59 chr6 8293754 8293805 -180985749 + L2 LINE L2 3144 3191 -81 28 29 0 0 chr6 8293952 8293987 -180985567 + AT_rich Low_complexity Low_complexity 1 35 0 6491 166 28 9 chr6 8294760 8295774 -180983780 + L1PB1 LINE L1 4 1044 -4284 2262 109 0 0 chr6 8295774 8296067 -180983487 - AluSg SINE Alu -17 293 1 6491 166 28 9 chr6 8296067 8296197 -180983357 + L1PB1 LINE L1 1044 1170 -4158 1988 122 24 0 chr6 8296199 8296487 -180983067 + AluSq SINE Alu 1 295 -18 6899 185 19 2 chr6 8296488 8298069 -180981485 + L1PB1 LINE L1 4071 5674 -659 11949 55 5 0 chr6 8298069 8300247 -180979307 + L1PA6 LINE L1 3973 6154 0 4729 75 33 75 chr6 8300247 8300934 -180978620 + L1PB1 LINE L1 5652 6326 -7 383 113 126 24 chr6 8300967 8301050 -180978504 + L1MEc LINE L1 3595 3675 -3890 405 183 0 37 chr6 8301055 8301137 -180978417 - L1 LINE L1 -3438 2708 2630 12949 168 87 21 chr6 8301148 8304089 -180975465 + L1MA4 LINE L1 3705 6452 -1267 207 0 0 0 chr6 8304089 8304112 -180975442 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2269 79 0 0 chr6 8304114 8304393 -180975161 - AluY SINE Alu -32 279 1 12949 168 87 21 chr6 8304393 8305201 -180974353 + L1MA4 LINE L1 6452 7719 0 475 267 7 15 chr6 8305303 8305438 -180974116 - L2 LINE L2 0 3313 3180 * 595 299 38 38 chr6 8305425 8305686 -180973868 - L2 LINE L2 -1035 2279 2019 314 369 40 25 chr6 8305745 8305943 -180973611 + MIR SINE MIR 22 222 -40 2080 119 7 3 chr6 8306187 8306481 -180973073 + AluSc SINE Alu 1 295 -14 2344 102 0 0 chr6 8306916 8307221 -180972333 - AluY SINE Alu -6 305 1 2155 81 0 0 chr6 8307248 8307555 -180971999 - AluY SINE Alu 0 307 1 2685 204 14 40 chr6 8307963 8308133 -180971421 + MER68 LTR ERV1 1 174 -388 1702 109 4 0 chr6 8308133 8308362 -180971192 - MER30 DNA MER1_type 0 230 1 2685 204 14 40 chr6 8308362 8308768 -180970786 + MER68 LTR ERV1 174 562 0 232 229 0 0 chr6 8308813 8308861 -180970693 + MLT1F1 LTR MaLR 78 125 -442 2499 197 55 35 chr6 8308887 8309382 -180970172 + L1MD3 LINE L1 7406 7889 -106 2819 52 25 44 chr6 8309382 8309611 -180969943 + THE1A LTR MaLR 1 222 -133 2396 95 0 7 chr6 8309611 8309917 -180969637 + AluSg SINE Alu 1 304 -6 2819 52 25 44 chr6 8309917 8310049 -180969505 + THE1A LTR MaLR 222 355 0 12641 92 2 1 chr6 8310049 8311627 -180967927 + THE1A-int LTR MaLR 1 1580 0 2844 79 6 6 chr6 8311629 8311982 -180967572 + THE1A LTR MaLR 3 355 0 2499 197 55 35 chr6 8311982 8312060 -180967494 + L1MD3 LINE L1 7889 7995 0 621 203 68 34 chr6 8312193 8312370 -180967184 - L1MC5 LINE L1 -61 7900 7718 1689 151 3 63 chr6 8312370 8312687 -180966867 - AluJo SINE Alu -8 304 7 360 0 0 0 chr6 8312770 8312810 -180966744 + (CA)n Simple_repeat Simple_repeat 1 40 0 1291 157 0 0 chr6 8312821 8313012 -180966542 - AluJb SINE Alu -16 296 106 1314 230 54 16 chr6 8313054 8313441 -180966113 - L1MC5 LINE L1 -305 7656 7255 897 185 11 85 chr6 8313453 8313713 -180965841 - L1MC5 LINE L1 -808 7153 6913 924 267 89 36 chr6 8313754 8314147 -180965407 - L1MC4a LINE L1 -893 6915 6502 24 32 0 0 chr6 8314235 8314266 -180965288 + AT_rich Low_complexity Low_complexity 1 31 0 2236 110 13 3 chr6 8314340 8314648 -180964906 + AluSx SINE Alu 1 311 -1 291 54 0 0 chr6 8314650 8314687 -180964867 + (GGGGA)n Simple_repeat Simple_repeat 3 39 0 2381 103 0 0 chr6 8314698 8315008 -180964546 + AluSq SINE Alu 1 310 -3 233 309 41 0 chr6 8315118 8315215 -180964339 - L1MC4a LINE L1 -1651 6157 6057 217 300 0 0 chr6 8315270 8315327 -180964227 + (TA)n Simple_repeat Simple_repeat 1 60 -10 1988 140 3 3 chr6 8315327 8315619 -180963935 - AluJb SINE Alu -18 294 3 217 300 0 0 chr6 8315619 8315631 -180963923 + (TA)n Simple_repeat Simple_repeat 59 70 0 11623 116 29 32 chr6 8315653 8316211 -180963343 + Tigger1 DNA MER2_type 24 583 -1835 2174 116 0 7 chr6 8316211 8316512 -180963042 - AluSx SINE Alu -11 301 3 11623 116 29 32 chr6 8316512 8316555 -180962999 + Tigger1 DNA MER2_type 583 625 -1793 1968 99 8 0 chr6 8316555 8316808 -180962746 + AluSc SINE Alu 39 293 -16 11623 116 29 32 chr6 8316808 8317579 -180961975 + Tigger1 DNA MER2_type 625 1397 -1021 2540 27 20 3 chr6 8317579 8317873 -180961681 - AluY SINE Alu -9 302 4 11623 116 29 32 chr6 8317873 8318220 -180961334 + Tigger1 DNA MER2_type 1397 1740 -678 2174 93 7 20 chr6 8318220 8318522 -180961032 + AluY SINE Alu 1 298 -13 11623 116 29 32 chr6 8318522 8318644 -180960910 + Tigger1 DNA MER2_type 1740 1861 -557 799 91 50 0 chr6 8318640 8318761 -180960793 + Tigger1 DNA MER2_type 397 523 -1895 * 3404 148 18 12 chr6 8318753 8319312 -180960242 + Tigger1 DNA MER2_type 1855 2416 -2 472 241 63 44 chr6 8319504 8319662 -180959892 - MER46A DNA MER2_type -74 162 2 252 301 44 44 chr6 8320043 8320179 -180959375 - HAL1b LINE L1 -708 640 505 372 320 73 21 chr6 8320191 8320425 -180959129 - HAL1b LINE L1 -887 461 216 2084 117 3 10 chr6 8320759 8321049 -180958505 + AluSx SINE Alu 1 288 -24 1948 177 74 26 chr6 8321466 8321844 -180957710 + MSTD LTR MaLR 1 396 0 2352 100 0 6 chr6 8322544 8322855 -180956699 + AluSq SINE Alu 1 309 -4 283 299 75 108 chr6 8323441 8323655 -180955899 + L2 LINE L2 2979 3185 -87 267 276 0 0 chr6 8323787 8323845 -180955709 + MLT1J LTR MaLR 242 299 -212 909 156 0 15 chr6 8323847 8323982 -180955572 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr6 8323982 8324003 -180955551 + AT_rich Low_complexity Low_complexity 1 21 0 959 154 0 0 chr6 8324174 8324317 -180955237 + AluJb SINE Alu 158 300 -12 246 275 94 22 chr6 8324386 8324524 -180955030 + MLT1J LTR MaLR 364 511 0 303 330 11 0 chr6 8325522 8325616 -180953938 + L2 LINE L2 3207 3301 -12 261 254 0 0 chr6 8325645 8325704 -180953850 + MLT1E1 LTR MaLR 596 654 0 610 359 106 21 chr6 8325704 8326322 -180953232 - L2 LINE L2 -181 3132 2447 2162 109 13 10 chr6 8326430 8326733 -180952821 - AluSx SINE Alu -8 304 1 28 71 0 0 chr6 8326861 8326917 -180952637 + AT_rich Low_complexity Low_complexity 1 56 0 213 319 151 8 chr6 8327404 8327523 -180952031 - L2 LINE L2 -328 2944 2809 183 302 0 63 chr6 8327704 8327767 -180951787 - L2 LINE L2 -810 2504 2446 446 278 85 14 chr6 8328339 8328557 -180950997 + L1ME LINE L1 5509 5745 -425 33 43 0 0 chr6 8328636 8328683 -180950871 + AT_rich Low_complexity Low_complexity 1 47 0 1575 100 256 0 chr6 8330282 8330552 -180949002 - MER44D DNA MER2_type 0 609 1 1063 248 58 111 chr6 8330713 8331246 -180948308 + MER21B LTR ERV1 24 528 -335 206 250 0 0 chr6 8331489 8331529 -180948025 - L2 LINE L2 -9 3263 3224 * 694 256 67 0 chr6 8331491 8331671 -180947883 - MIR SINE MIR -5 257 66 473 244 9 43 chr6 8331818 8331933 -180947621 - L2 LINE L2 -7 3265 3155 1990 189 64 11 chr6 8332307 8332747 -180946807 - L1MD2 LINE L1 -2 6357 5895 2390 74 10 0 chr6 8333259 8333556 -180945998 + AluSp SINE Alu 2 301 -12 2310 91 0 36 chr6 8333625 8333933 -180945621 + AluSx SINE Alu 1 297 -15 416 209 37 4 chr6 8334328 8334465 -180945089 + MER5A DNA MER1_type 1 189 0 2148 119 3 0 chr6 8336079 8336374 -180943180 - AluSp SINE Alu -17 296 1 303 219 156 0 chr6 8337337 8337433 -180942121 + L2 LINE L2 3188 3298 -15 2619 48 0 3 chr6 8337571 8337880 -180941674 - AluY SINE Alu -3 308 1 955 174 6 12 chr6 8337888 8338049 -180941505 - FRAM SINE Alu -21 155 1 2067 122 0 3 chr6 8338125 8338411 -180941143 - AluSg SINE Alu -10 300 16 237 352 145 11 chr6 8338589 8338768 -180940786 - MIR SINE MIR -11 251 49 443 193 73 0 chr6 8338798 8338910 -180940644 - L1MB7 LINE L1 -22 6149 6019 655 194 215 26 chr6 8339023 8339214 -180940340 + MIR SINE MIR 36 262 0 247 318 0 0 chr6 8339470 8339533 -180940021 + MLT1L LTR MaLR 1 63 -552 265 250 100 50 chr6 8340009 8340129 -180939425 - L2 LINE L2 -23 3290 3165 14006 120 53 39 chr6 8340994 8341940 -180937614 - Tigger1 DNA MER2_type -13 2405 1473 2420 65 0 0 chr6 8341940 8342232 -180937322 - AluY SINE Alu -19 292 1 14006 120 53 39 chr6 8342232 8342540 -180937014 - Tigger1 DNA MER2_type -945 1473 1171 2536 61 0 3 chr6 8342540 8342851 -180936703 - AluY SINE Alu 0 311 2 14006 120 53 39 chr6 8342851 8343411 -180936143 - Tigger1 DNA MER2_type -1247 1171 620 1785 142 55 0 chr6 8343411 8343686 -180935868 - AluJb SINE Alu -22 290 1 14006 120 53 39 chr6 8343686 8344242 -180935312 - Tigger1 DNA MER2_type -1798 620 1 2137 131 0 3 chr6 8347882 8348188 -180931366 - AluSx SINE Alu -7 305 1 1965 162 51 14 chr6 8398578 8398930 -180880624 - MLT1A1 LTR MaLR 0 365 1 514 133 71 20 chr6 8399072 8399170 -180880384 + Tigger2 DNA MER2_type 2398 2500 -218 2323 83 10 7 chr6 8399561 8399863 -180879691 - AluSg SINE Alu -7 303 1 294 315 0 0 chr6 8400132 8400221 -180879333 - L1MC4 LINE L1 -26 8016 7928 22 0 0 0 chr6 8400348 8400370 -180879184 + AT_rich Low_complexity Low_complexity 1 22 0 371 258 117 75 chr6 8400379 8400496 -180879058 + L1ME LINE L1 5310 5421 -700 2128 119 0 3 chr6 8400496 8400790 -180878764 - AluSx SINE Alu -19 293 1 371 258 117 75 chr6 8400790 8401006 -180878548 + L1ME LINE L1 5421 5657 -464 1851 114 107 11 chr6 8401007 8401279 -180878275 + AluSx SINE Alu 2 299 -13 2390 156 44 35 chr6 8401372 8401801 -180877753 + Tigger2a DNA MER2_type 1 433 -1 2031 113 0 7 chr6 8401910 8402185 -180877369 + AluSx SINE Alu 1 273 -39 195 100 0 0 chr6 8402197 8402227 -180877327 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 310 303 138 9 chr6 8402552 8402661 -180876893 + L2 LINE L2 3125 3247 -25 184 302 48 0 chr6 8403263 8403326 -180876228 + L3 LINE CR1 1495 1560 -17 22 35 0 0 chr6 8403356 8403385 -180876169 + AT_rich Low_complexity Low_complexity 1 29 0 237 117 33 83 chr6 8403794 8403854 -180875700 - L2 LINE L2 -337 2977 2921 2247 94 7 7 chr6 8404812 8405109 -180874445 - AluSg SINE Alu -13 297 1 253 217 87 0 chr6 8405397 8405466 -180874088 + L1ME3A LINE L1 6032 6106 -64 237 296 239 21 chr6 8405628 8405770 -180873784 - MIR SINE MIR -70 192 20 1798 166 3 54 chr6 8405884 8406156 -180873398 + MER7A DNA MER2_type 5 254 -2784 2374 81 0 0 chr6 8406156 8406443 -180873111 + AluSp SINE Alu 1 290 -23 369 0 0 0 chr6 8406443 8406484 -180873070 + (CA)n Simple_repeat Simple_repeat 2 42 0 1798 166 3 54 chr6 8406493 8406582 -180872972 + MER7A DNA MER2_type 254 346 0 226 310 26 26 chr6 8406582 8406695 -180872859 - L1MC/D LINE L1 -2009 5799 5687 23 0 0 0 chr6 8406814 8406837 -180872717 + AT_rich Low_complexity Low_complexity 1 23 0 3132 129 16 2 chr6 8407086 8407528 -180872026 + MER83 LTR ERV1 1 448 0 2222 117 0 0 chr6 8407635 8407935 -180871619 + AluSx SINE Alu 1 300 -12 360 0 0 0 chr6 8407935 8407975 -180871579 + (TA)n Simple_repeat Simple_repeat 2 41 0 29 47 0 0 chr6 8408020 8408063 -180871491 + AT_rich Low_complexity Low_complexity 1 43 0 274 324 56 9 chr6 8408107 8408215 -180871339 + MIR3 SINE MIR 15 127 -81 288 300 43 91 chr6 8408513 8408723 -180870831 + L2 LINE L2 3034 3233 -39 204 200 0 0 chr6 8409354 8409394 -180870160 + G-rich Low_complexity Low_complexity 2 41 0 228 67 0 0 chr6 8409992 8410022 -180869532 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 2520 226 64 74 chr6 8410783 8411965 -180867589 + L1MC5 LINE L1 6424 7589 -372 422 235 94 34 chr6 8412073 8412222 -180867332 - MER5B DNA MER1_type -19 159 2 556 300 138 66 chr6 8412905 8413075 -180866479 - L2 LINE L2 -20 3252 3096 2199 103 0 10 chr6 8413075 8413366 -180866188 + AluSg1 SINE Alu 1 288 -21 556 300 138 66 chr6 8413366 8413528 -180866026 - L2 LINE L2 -176 3096 2896 2088 196 56 28 chr6 8413623 8413974 -180865580 + MLT2B1 LTR ERVL 3 372 -148 2400 148 28 14 chr6 8413974 8414333 -180865221 - THE1B LTR MaLR 0 364 1 2088 196 56 28 chr6 8414333 8414446 -180865108 + MLT2B1 LTR ERVL 372 480 -40 2142 104 0 7 chr6 8414452 8414732 -180864822 - AluSg SINE Alu -32 278 1 326 349 35 28 chr6 8414765 8415020 -180864534 + L2 LINE L2 2721 2977 -337 196 353 49 20 chr6 8415139 8415241 -180864313 + L2 LINE L2 3208 3312 -1 651 199 55 7 chr6 8415595 8415741 -180863813 - MIR SINE MIR -10 252 100 239 156 22 0 chr6 8416450 8416495 -180863059 + L2 LINE L2 3268 3313 0 2197 140 0 0 chr6 8416563 8416894 -180862660 + AluSx SINE Alu 1 312 0 854 156 64 64 chr6 8416919 8417092 -180862462 + FRAM SINE Alu 1 171 -5 244 246 0 0 chr6 8417095 8417152 -180862402 + A-rich Low_complexity Low_complexity 1 57 0 812 289 138 29 chr6 8417487 8417836 -180861718 - MLT1J2 LTR MaLR 0 450 64 501 296 74 16 chr6 8417870 8418059 -180861495 + LTR33 LTR ERVL 26 225 -296 325 184 23 58 chr6 8418063 8418150 -180861404 + LTR52 LTR ERVL 9 92 -329 301 247 52 58 chr6 8418220 8418374 -180861180 + LTR52 LTR ERVL 269 421 0 448 307 43 0 chr6 8418402 8418565 -180860989 + LTR33 LTR ERVL 350 519 -2 1992 125 3 38 chr6 8418928 8419247 -180860307 - AluSx SINE Alu -4 308 1 398 298 87 6 chr6 8420042 8420203 -180859351 + L3 LINE CR1 1337 1510 -67 244 225 34 56 chr6 8420287 8420376 -180859178 - L1MC5 LINE L1 -37 7924 7838 338 119 104 0 chr6 8420488 8420555 -180858999 + L1M4 LINE L1 5721 5794 -390 2456 61 0 0 chr6 8420572 8420866 -180858688 - AluY SINE Alu -17 294 1 485 298 178 24 chr6 8421288 8421808 -180857746 - L2 LINE L2 -123 3190 2585 391 284 81 49 chr6 8421810 8422095 -180857459 - MLT1J LTR MaLR -2 509 216 1198 236 119 6 chr6 8422270 8422588 -180856966 + MLT1J LTR MaLR 33 386 -125 1160 148 51 37 chr6 8422814 8422927 -180856627 + MER30 DNA MER1_type 11 130 -100 2419 74 0 13 chr6 8422927 8423238 -180856316 + AluY SINE Alu 1 307 -4 1160 148 51 37 chr6 8423238 8423340 -180856214 + MER30 DNA MER1_type 130 229 -1 2127 125 0 7 chr6 8423621 8423917 -180855637 - AluSx SINE Alu -18 294 1 202 365 66 15 chr6 8423923 8424060 -180855494 + L2 LINE L2 3146 3289 -24 1895 155 3 7 chr6 8424079 8424375 -180855179 - AluJb SINE Alu -17 295 1 440 272 103 82 chr6 8424561 8424660 -180854894 - MLT1G1 LTR MaLR -406 189 83 2235 105 26 0 chr6 8424660 8424965 -180854589 + AluSq SINE Alu 1 313 0 440 272 103 82 chr6 8424965 8425049 -180854505 - MLT1G1 LTR MaLR -512 83 2 306 276 72 125 chr6 8425051 8425355 -180854199 - MLT1G1-int LTR MaLR -1 1370 1083 2114 125 3 0 chr6 8425697 8425992 -180853562 + AluSx SINE Alu 1 296 -16 337 220 165 0 chr6 8426417 8426526 -180853028 + L1MA10 LINE L1 6201 6327 -7 37 0 0 0 chr6 8427100 8427137 -180852417 + AT_rich Low_complexity Low_complexity 1 37 0 563 218 17 165 chr6 8427199 8427389 -180852165 - MLT1G1-int LTR MaLR -770 601 384 2522 129 114 8 chr6 8427389 8427776 -180851778 - MSTA LTR MaLR 0 428 1 563 218 17 165 chr6 8427776 8427802 -180851752 - MLT1G1-int LTR MaLR -987 384 356 1795 181 0 7 chr6 8427802 8428101 -180851453 - AluJb SINE Alu -4 308 12 563 218 17 165 chr6 8428101 8428146 -180851408 - MLT1G1-int LTR MaLR -1015 356 306 2590 160 19 16 chr6 8428146 8428506 -180851048 + MSTB1 LTR MaLR 1 364 -68 2057 92 27 37 chr6 8428506 8428800 -180850754 - AluSx SINE Alu -21 291 1 2590 160 19 16 chr6 8428800 8428870 -180850684 + MSTB1 LTR MaLR 364 432 0 563 218 17 165 chr6 8428870 8429024 -180850530 - MLT1G1-int LTR MaLR -1065 306 246 236 238 0 16 chr6 8429057 8429120 -180850434 - MLT1G1-int LTR MaLR -1309 62 1 2090 111 14 0 chr6 8429126 8429415 -180850139 - AluSq SINE Alu -20 293 1 1989 111 21 17 chr6 8430527 8430816 -180848738 + AluSp SINE Alu 1 290 -23 811 265 88 8 chr6 8430833 8431082 -180848472 - L1ME3A LINE L1 -8 6162 5894 * 915 226 39 11 chr6 8431075 8431093 -180848461 - L1ME2 LINE L1 -168 5996 5980 861 151 26 0 chr6 8431093 8431245 -180848309 - L1MA10 LINE L1 -2 6332 6177 915 226 39 11 chr6 8431245 8431505 -180848049 - L1ME2 LINE L1 -184 5980 5754 344 183 0 0 chr6 8431505 8431565 -180847989 - L1ME3A LINE L1 -262 5908 5849 370 282 149 51 chr6 8431863 8432118 -180847436 + MLT1I LTR MaLR 63 342 -67 1732 165 6 22 chr6 8432232 8432548 -180847006 - AluJo SINE Alu 0 312 2 4856 141 24 3 chr6 8432705 8433472 -180846082 + L1PA16 LINE L1 5363 6145 -21 778 178 0 0 chr6 8433529 8433647 -180845907 + FLAM_A SINE Alu 6 123 -19 1975 167 3 0 chr6 8433841 8434146 -180845408 + AluJb SINE Alu 1 306 -6 2337 89 3 7 chr6 8434718 8435020 -180844534 - AluSg SINE Alu -9 301 1 684 245 26 49 chr6 8435064 8435329 -180844225 + MIR SINE MIR 2 260 -2 1688 92 0 0 chr6 8435659 8435876 -180843678 - AluY SINE Alu -11 300 84 276 149 0 0 chr6 8435908 8435955 -180843599 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 273 327 75 9 chr6 8435957 8436064 -180843490 - L2 LINE L2 -5 3308 3195 1805 102 94 23 chr6 8436814 8437107 -180842447 + AluSx SINE Alu 1 312 0 201 286 82 0 chr6 8437410 8437459 -180842095 + L2 LINE L2 3207 3259 -13 423 236 0 81 chr6 8437487 8437610 -180841944 - MER69 DNA AcHobo 0 2526 2414 2015 168 8 46 chr6 8438887 8439279 -180840275 - MLT1B LTR MaLR -6 384 8 1879 144 0 3 chr6 8439368 8439652 -180839902 - AluJb SINE Alu -3 309 27 1747 146 4 0 chr6 8439912 8440166 -180839388 - AluSx SINE Alu -57 255 1 1992 127 51 7 chr6 8440534 8440826 -180838728 - AluSx SINE Alu -7 305 1 467 144 152 30 chr6 8440913 8441045 -180838509 - L2 LINE L2 -8 3305 3158 268 141 109 47 chr6 8441052 8441116 -180838438 + HsTC2 DNA Tc2 3 70 -1828 1827 224 50 42 chr6 8441150 8441527 -180838027 + HsTC2 DNA Tc2 1274 1659 -239 2334 94 3 0 chr6 8441527 8441835 -180837719 - AluSq SINE Alu -4 309 1 1827 224 50 42 chr6 8441835 8442077 -180837477 + HsTC2 DNA Tc2 1659 1898 0 331 339 5 16 chr6 8442184 8442323 -180837231 + MIR SINE MIR 30 144 -64 200 286 14 14 chr6 8442385 8442455 -180837099 - L2 LINE L2 -49 3264 3195 2009 146 13 7 chr6 8442850 8443158 -180836396 - AluSx SINE Alu -2 310 1 383 261 45 18 chr6 8444558 8444669 -180834885 - MIR SINE MIR -92 170 57 42 65 0 0 chr6 8444677 8444754 -180834800 + AT_rich Low_complexity Low_complexity 1 77 0 2268 83 0 0 chr6 8444832 8445108 -180834446 - AluSc SINE Alu -14 295 20 184 315 102 39 chr6 8445188 8445315 -180834239 + MIR SINE MIR 13 147 -115 2053 139 0 10 chr6 8446376 8446686 -180832868 + AluJb SINE Alu 6 312 0 22 70 0 0 chr6 8447105 8447148 -180832406 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr6 8447177 8447212 -180832342 + AT_rich Low_complexity Low_complexity 1 35 0 317 227 0 13 chr6 8447394 8447469 -180832085 + MLT1I LTR MaLR 327 400 -9 1912 147 10 7 chr6 8448988 8449295 -180830259 - AluSx SINE Alu -4 308 1 21 0 0 0 chr6 8449411 8449432 -180830122 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 8449432 8449453 -180830101 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 2219 98 0 3 chr6 8450230 8450526 -180829028 - AluSq SINE Alu -18 295 1 342 61 0 0 chr6 8450806 8450855 -180828699 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 281 316 105 0 chr6 8450922 8451055 -180828499 + MIR SINE MIR 110 256 -6 189 162 0 0 chr6 8451153 8451173 -180828381 + GA-rich Low_complexity Low_complexity 2 24 -14 2261 117 0 3 chr6 8451173 8451473 -180828081 + AluSq SINE Alu 1 299 -14 189 162 0 0 chr6 8451473 8451489 -180828065 + GA-rich Low_complexity Low_complexity 23 38 0 338 283 71 0 chr6 8451625 8451738 -180827816 - L2 LINE L2 -16 3256 3136 225 65 0 0 chr6 8453138 8453169 -180826385 + (CAT)n Simple_repeat Simple_repeat 2 32 0 308 231 15 92 chr6 8454222 8454352 -180825202 + MIR SINE MIR 84 203 -59 180 0 0 0 chr6 8454352 8454372 -180825182 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 274 318 130 7 chr6 8454431 8454585 -180824969 - MIR3 SINE MIR -32 176 4 2315 159 20 54 chr6 8455393 8455682 -180823872 - MSTB LTR MaLR 0 426 156 2247 96 10 3 chr6 8455682 8455975 -180823579 - AluSp SINE Alu -18 295 1 2315 159 20 54 chr6 8455975 8456126 -180823428 - MSTB LTR MaLR -270 156 1 1604 194 169 54 chr6 8457409 8457448 -180822106 - MLT2B1 LTR ERVL 0 520 487 405 0 0 0 chr6 8457448 8457493 -180822061 + (TG)n Simple_repeat Simple_repeat 1 45 0 1604 194 169 54 chr6 8457493 8457916 -180821638 - MLT2B1 LTR ERVL -33 487 5 311 331 103 0 chr6 8458198 8458281 -180821273 + MIR3 SINE MIR 31 104 -104 1528 186 49 3 chr6 8458281 8458566 -180820988 - AluJb SINE Alu -12 300 3 311 331 103 0 chr6 8458566 8458618 -180820936 + MIR3 SINE MIR 104 180 -28 844 201 0 0 chr6 8459059 8459203 -180820351 - Tigger5 DNA MER2_type 0 2323 2180 901 179 19 13 chr6 8459204 8459360 -180820194 - Tigger5 DNA MER2_type -2166 157 1 1196 224 44 108 chr6 8460766 8461010 -180818544 + MLT1C LTR MaLR 1 198 -269 2241 125 0 0 chr6 8461010 8461322 -180818232 + AluSx SINE Alu 1 312 0 1196 224 44 108 chr6 8461322 8461576 -180817978 + MLT1C LTR MaLR 198 467 0 978 210 68 5 chr6 8461689 8461908 -180817646 + MER96B DNA MER1_type? 6 238 -179 307 256 31 39 chr6 8462741 8462870 -180816684 - L1ME1 LINE L1 -43 6123 5996 2146 240 28 9 chr6 8462916 8463490 -180816064 - L1M4 LINE L1 -1120 5262 4678 704 174 8 0 chr6 8463496 8463617 -180815937 - MER31A LTR ERV1 0 485 364 2384 239 80 3 chr6 8463617 8464370 -180815184 - L1M4c LINE L1 -2732 3650 2840 1817 166 68 91 chr6 8464416 8464964 -180814590 - LTR49 LTR ERV1 -49 546 12 3782 251 36 29 chr6 8464971 8465610 -180813944 - L1M4c LINE L1 -3531 2851 2218 2072 143 10 0 chr6 8465610 8465917 -180813637 - AluSg SINE Alu 0 310 1 3782 251 36 29 chr6 8465917 8467000 -180812554 - L1M4c LINE L1 -4164 2218 1023 1783 175 0 3 chr6 8467638 8467954 -180811600 - AluJb SINE Alu 0 315 1 2717 113 40 38 chr6 8468317 8468740 -180810814 - MSTA LTR MaLR -4 424 1 2505 77 0 0 chr6 8468851 8469150 -180810404 - AluSc SINE Alu -10 299 1 221 316 79 82 chr6 8469224 8469553 -180810001 - L2 LINE L2 0 3272 2945 301 340 7 44 chr6 8469802 8469921 -180809633 - MIR SINE MIR -67 141 42 2237 37 67 0 chr6 8469921 8470190 -180809364 - AluY SINE Alu -15 296 10 301 340 7 44 chr6 8470190 8470229 -180809325 - MIR SINE MIR -166 42 3 2333 97 3 7 chr6 8470282 8470592 -180808962 - AluSx SINE Alu -3 309 1 4276 132 97 128 chr6 8470842 8472065 -180807489 + pTR5 LTR ERV1 738 2219 -219 2931 13 0 0 chr6 8472065 8472383 -180807171 + AluYb8 SINE Alu 1 318 0 4276 132 97 128 chr6 8472383 8472597 -180806957 + pTR5 LTR ERV1 2219 2438 0 243 314 23 12 chr6 8472670 8472756 -180806798 - MIR SINE MIR -108 154 68 240 86 0 0 chr6 8473288 8473323 -180806231 + (TTCCC)n Simple_repeat Simple_repeat 4 38 0 213 213 66 33 chr6 8473472 8473533 -180806021 - L2 LINE L2 0 3313 3251 1446 242 114 39 chr6 8474432 8474895 -180804659 - MLT1D LTR MaLR -7 498 1 445 304 59 42 chr6 8474894 8475131 -180804423 + MER112 DNA MER1_type 2 242 -18 * 210 371 0 53 chr6 8476328 8476479 -180803075 + MIR3 SINE MIR 16 158 -50 2414 64 0 3 chr6 8476487 8476784 -180802770 - AluY SINE Alu -14 297 2 2604 65 0 0 chr6 8477899 8478206 -180801348 + AluY SINE Alu 1 307 -4 5831 147 83 53 chr6 8478650 8479557 -180799997 - Tigger3b DNA MER2_type -1797 1231 279 2285 102 3 0 chr6 8479557 8479861 -180799693 + AluSq SINE Alu 1 305 -8 5831 147 83 53 chr6 8479861 8480139 -180799415 - Tigger3b DNA MER2_type -2749 279 11 2187 102 0 22 chr6 8480140 8480453 -180799101 + AluSx SINE Alu 1 306 -6 204 97 0 0 chr6 8480820 8480851 -180798703 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 1101 272 83 23 chr6 8480853 8481448 -180798106 - L2 LINE L2 -10 3303 2679 1320 256 85 67 chr6 8481694 8482163 -180797391 - L1ME3A LINE L1 -116 6054 5595 1512 183 29 26 chr6 8482163 8482474 -180797080 - AluJo SINE Alu 0 312 1 1320 256 85 67 chr6 8482474 8483078 -180796476 - L1ME3A LINE L1 -575 5595 4962 336 204 9 19 chr6 8483083 8483191 -180796363 + CT-rich Low_complexity Low_complexity 3 109 0 515 214 172 0 chr6 8483340 8483485 -180796069 - MER5B DNA MER1_type 0 178 9 603 268 13 0 chr6 8483529 8483686 -180795868 - MER53 DNA DNA -1 188 30 316 135 27 0 chr6 8483712 8483786 -180795768 + (TA)n Simple_repeat Simple_repeat 1 76 0 1670 115 93 22 chr6 8483786 8484055 -180795499 - AluSx SINE Alu -24 288 1 393 276 58 63 chr6 8485044 8485218 -180794336 - MIR SINE MIR -70 192 20 1973 148 0 10 chr6 8485433 8485730 -180793824 - AluJb SINE Alu -16 296 3 364 297 59 109 chr6 8486021 8486277 -180793277 - L2 LINE L2 0 3272 3030 280 309 140 11 chr6 8487569 8487747 -180791807 - MIR SINE MIR -6 256 56 530 208 10 10 chr6 8487966 8488177 -180791377 + CT-rich Low_complexity Low_complexity 1 211 0 183 327 57 86 chr6 8488223 8488572 -180790982 - L2 LINE L2 -61 3211 2873 2317 180 46 58 chr6 8488952 8489518 -180790036 - MER89 LTR ERV1 0 559 1 242 211 0 14 chr6 8491596 8491604 -180787950 + (TA)n Simple_repeat Simple_repeat 1 8 -62 888 109 8 0 chr6 8491604 8491723 -180787831 - L1PA11 LINE L1 -2 6172 6053 242 211 0 14 chr6 8491723 8491785 -180787769 + (TA)n Simple_repeat Simple_repeat 8 70 0 2501 26 0 48 chr6 8491786 8492097 -180787457 - AluY SINE Alu -15 296 1 6045 107 4 13 chr6 8492100 8492778 -180786776 - L1PA11 LINE L1 -110 6064 5381 2530 68 0 0 chr6 8492778 8493089 -180786465 - AluY SINE Alu 0 311 1 6045 107 4 13 chr6 8493089 8493848 -180785706 - L1PA11 LINE L1 -793 5381 4639 23 33 0 0 chr6 8493848 8493878 -180785676 + AT_rich Low_complexity Low_complexity 1 30 0 277 300 0 22 chr6 8495146 8495236 -180784318 + GA-rich Low_complexity Low_complexity 2 89 0 1946 158 37 23 chr6 8495567 8495921 -180783633 - MLT1A1 LTR MaLR -6 359 1 30 45 0 0 chr6 8496578 8496622 -180782932 + AT_rich Low_complexity Low_complexity 1 44 0 2185 117 0 7 chr6 8496762 8497060 -180782494 - AluSx SINE Alu -16 296 1 2246 218 16 20 chr6 8497069 8497619 -180781935 - L1MB8 LINE L1 -73 6105 5558 222 62 0 0 chr6 8497622 8497654 -180781900 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1967 140 0 0 chr6 8497654 8497933 -180781621 - AluSx SINE Alu -33 279 1 395 272 7 0 chr6 8499388 8499535 -180780019 + GA-rich Low_complexity Low_complexity 4 151 0 2595 126 15 106 chr6 8499800 8500032 -180779522 + MER4B LTR ERV1 1 253 -526 2363 98 23 0 chr6 8500032 8500337 -180779217 + AluSx SINE Alu 1 312 0 2595 126 15 106 chr6 8500337 8500779 -180778775 + MER4B LTR ERV1 253 779 0 21 36 0 0 chr6 8502954 8502982 -180776572 + AT_rich Low_complexity Low_complexity 1 28 0 184 255 20 20 chr6 8503127 8503178 -180776376 + MIR SINE MIR 46 96 -166 2455 123 27 11 chr6 8503625 8503992 -180775562 - L1PB3 LINE L1 0 6154 5782 283 141 35 24 chr6 8503999 8504084 -180775470 + (TA)n Simple_repeat Simple_repeat 1 86 0 6436 137 16 1 chr6 8504129 8505530 -180774024 - L1PB2 LINE L1 -3 6148 4724 499 120 27 0 chr6 8505528 8505603 -180773951 - L1PB3 LINE L1 -366 5785 5709 * 180 0 0 0 chr6 8505739 8505759 -180773795 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1956 137 0 0 chr6 8505759 8506037 -180773517 - AluSg SINE Alu -32 278 1 730 193 37 7 chr6 8506068 8506203 -180773351 - Tigger7 DNA MER2_type -566 139 1 3158 116 67 28 chr6 8506206 8506740 -180772814 + L1MA8 LINE L1 5734 6288 -3 916 229 76 5 chr6 8507371 8507581 -180771973 - MER89 LTR ERV1 0 559 335 1798 210 14 25 chr6 8507583 8507949 -180771605 + MLT1A1 LTR MaLR 4 365 0 1456 208 38 29 chr6 8507949 8508283 -180771271 - MER89 LTR ERV1 -222 337 1 225 0 0 0 chr6 8509564 8509589 -180769965 + (T)n Simple_repeat Simple_repeat 1 25 0 2174 105 7 3 chr6 8509925 8510221 -180769333 + AluSc SINE Alu 1 297 -12 1854 97 0 8 chr6 8510739 8510987 -180768567 - AluSg SINE Alu -5 305 60 180 290 103 90 chr6 8511060 8511370 -180768184 + L2 LINE L2 2379 2692 -622 202 368 0 11 chr6 8511519 8511614 -180767940 + MER5B DNA MER1_type 62 155 -23 217 313 17 26 chr6 8512400 8512515 -180767039 + GA-rich Low_complexity Low_complexity 5 118 0 192 40 0 0 chr6 8512599 8512624 -180766930 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 1753 147 6 45 chr6 8512624 8512937 -180766617 - AluJo SINE Alu -11 301 1 257 163 0 0 chr6 8516212 8516255 -180763299 + L2 LINE L2 3258 3300 -13 235 292 96 18 chr6 8516512 8516701 -180762853 + MIR SINE MIR 3 207 -55 1758 114 19 19 chr6 8517331 8517594 -180761960 - AluSx SINE Alu -8 304 42 23 0 0 0 chr6 8519003 8519026 -180760528 + AT_rich Low_complexity Low_complexity 1 23 0 1749 171 3 7 chr6 8519052 8519345 -180760209 - AluJb SINE Alu -20 292 1 283 284 23 11 chr6 8519684 8519772 -180759782 - MER5B DNA MER1_type -86 92 4 1976 176 42 3 chr6 8519914 8520249 -180759305 - MER7A DNA MER2_type 0 346 1 265 298 0 21 chr6 8520571 8520665 -180758889 - L1MC5 LINE L1 -62 7899 7808 21 0 0 0 chr6 8521665 8521686 -180757868 + AT_rich Low_complexity Low_complexity 1 21 0 413 254 0 45 chr6 8521779 8521889 -180757665 + L1ME1 LINE L1 6035 6139 -27 706 162 0 0 chr6 8522139 8522256 -180757298 - AluJo SINE Alu -3 309 193 818 165 0 0 chr6 8522272 8522393 -180757161 - AluJo SINE Alu -187 125 5 7217 5 0 0 chr6 8523361 8524114 -180755440 + L1PA2 LINE L1 5403 6155 0 21 36 0 0 chr6 8524147 8524175 -180755379 + AT_rich Low_complexity Low_complexity 1 28 0 1548 86 10 0 chr6 8524628 8524825 -180754729 - AluY SINE Alu -15 296 98 428 341 24 12 chr6 8525231 8525395 -180754159 - MIR3 SINE MIR -5 203 38 1905 147 0 0 chr6 8526561 8526840 -180752714 + AluJb SINE Alu 5 283 -29 234 0 0 0 chr6 8527282 8527308 -180752246 + (A)n Simple_repeat Simple_repeat 1 26 0 1917 137 29 0 chr6 8528026 8528304 -180751250 - AluJo SINE Alu -26 286 1 1375 178 22 0 chr6 8528469 8528700 -180750854 - AluJo SINE Alu -76 236 1 363 64 0 0 chr6 8529453 8529500 -180750054 - MADE1 DNA Mariner 0 80 34 2101 114 4 0 chr6 8529504 8529832 -180749722 + AluSx SINE Alu 1 329 0 2271 170 83 11 chr6 8529839 8530275 -180749279 + MLT1C LTR MaLR 1 467 0 969 168 21 26 chr6 8530335 8530525 -180749029 - MER53 DNA DNA 0 189 1 1937 179 55 60 chr6 8530703 8531275 -180748279 + MLT2A2 LTR ERVL 1 554 0 248 204 0 0 chr6 8531278 8531322 -180748232 - MER2 DNA MER2_type -21 324 281 21 0 0 0 chr6 8531333 8531354 -180748200 + AT_rich Low_complexity Low_complexity 1 21 0 5786 164 65 45 chr6 8531392 8531615 -180747939 - Tigger3b DNA MER2_type -1797 1231 1014 354 23 0 0 chr6 8531615 8531658 -180747896 + (TG)n Simple_repeat Simple_repeat 1 43 0 1957 114 7 21 chr6 8531658 8531938 -180747616 - AluSc SINE Alu -33 276 1 5786 164 65 45 chr6 8531938 8532259 -180747295 - Tigger3b DNA MER2_type -2014 1014 701 2249 118 0 3 chr6 8532259 8532564 -180746990 - AluSq SINE Alu -9 304 1 5786 164 65 45 chr6 8532564 8532853 -180746701 - Tigger3b DNA MER2_type -2327 701 419 2082 133 30 0 chr6 8532853 8533153 -180746401 - AluSx SINE Alu -3 309 1 5786 164 65 45 chr6 8533153 8533292 -180746262 - Tigger3b DNA MER2_type -2609 419 284 1585 58 0 0 chr6 8533292 8533512 -180746042 - AluY SINE Alu 0 313 94 5786 164 65 45 chr6 8533512 8533740 -180745814 - Tigger3b DNA MER2_type -2744 284 1 598 103 32 142 chr6 8533740 8533885 -180745669 - MER2 DNA MER2_type -215 130 1 584 216 0 0 chr6 8533908 8534024 -180745530 + MIR3 SINE MIR 67 182 -26 2851 10 0 0 chr6 8534392 8534700 -180744854 - AluYb8 SINE Alu -10 308 1 2280 109 0 0 chr6 8535049 8535352 -180744202 - AluSx SINE Alu -9 303 1 635 183 30 98 chr6 8535464 8535628 -180743926 + AluJb SINE Alu 129 281 -31 1511 134 4 4 chr6 8535779 8536010 -180743544 + AluJo SINE Alu 1 231 -81 1604 185 20 10 chr6 8537515 8537813 -180741741 + AluJo SINE Alu 1 301 -11 218 228 18 0 chr6 8537827 8537884 -180741670 - MIR SINE MIR -55 207 150 2313 113 3 0 chr6 8537900 8538211 -180741343 + AluSx SINE Alu 1 312 0 472 271 60 13 chr6 8538396 8538547 -180741007 - MIR SINE MIR -57 205 48 629 247 78 18 chr6 8538805 8538971 -180740583 + MER5A DNA MER1_type 13 188 -1 1872 150 35 0 chr6 8539038 8539325 -180740229 - AluJb SINE Alu -11 301 5 188 404 10 10 chr6 8540042 8540146 -180739408 - MIR SINE MIR -65 143 40 248 276 164 9 chr6 8540193 8540309 -180739245 + MER5A DNA MER1_type 6 139 -50 2346 113 0 0 chr6 8540323 8540625 -180738929 + AluSq SINE Alu 1 302 -11 802 219 44 11 chr6 8540757 8540940 -180738614 + MER5A DNA MER1_type 1 189 0 232 318 61 0 chr6 8541688 8541754 -180737800 - L2 LINE L2 -55 3217 3148 1136 297 107 9 chr6 8541882 8542340 -180737214 - LTR33A LTR ERVL -14 509 7 23 0 0 0 chr6 8542581 8542604 -180736950 + AT_rich Low_complexity Low_complexity 1 23 0 968 70 0 0 chr6 8542726 8542887 -180736667 + AluSg/x SINE Alu 172 332 0 574 273 58 73 chr6 8543145 8543320 -180736234 - MER5C DNA MER1_type -54 270 99 2084 139 0 3 chr6 8543320 8543630 -180735924 + AluSx SINE Alu 1 309 -3 574 273 58 73 chr6 8543630 8543714 -180735840 - MER5C DNA MER1_type -225 99 15 2271 108 0 0 chr6 8543939 8544235 -180735319 - AluSq SINE Alu -17 296 1 276 53 0 0 chr6 8544689 8544727 -180734827 + (CA)n Simple_repeat Simple_repeat 2 39 0 534 277 15 7 chr6 8546653 8546790 -180732764 + MIR3 SINE MIR 29 166 -42 219 69 0 0 chr6 8549057 8549086 -180730468 + (A)n Simple_repeat Simple_repeat 1 29 0 1604 196 86 65 chr6 8549567 8550077 -180729477 + LTR55 LTR ERV 21 541 -7 1725 109 79 78 chr6 8550227 8550664 -180728890 + LTR64 LTR ERVK 1 499 -59 1896 155 0 16 chr6 8550870 8551180 -180728374 - AluJo SINE Alu -3 309 5 1811 172 0 10 chr6 8551189 8551486 -180728068 - AluJo SINE Alu -18 294 1 380 266 21 0 chr6 8551968 8552062 -180727492 - MER5A DNA MER1_type -85 104 9 1146 220 128 90 chr6 8552320 8552889 -180726665 + MLT1G1 LTR MaLR 2 592 -3 7988 32 0 0 chr6 8554533 8556064 -180723490 - L1PA4 LINE L1 -4 6151 4623 253 93 37 0 chr6 8556192 8556246 -180723308 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 208 218 0 36 chr6 8557009 8557064 -180722490 - L2 LINE L2 0 3313 3261 817 301 18 11 chr6 8557617 8557903 -180721651 + L1ME LINE L1 16 303 -5767 915 248 66 33 chr6 8557908 8558295 -180721259 + L1ME LINE L1 726 1163 -4982 2575 272 65 26 chr6 8558308 8559500 -180720054 + L1ME LINE L1 1261 2543 -3537 2387 174 69 21 chr6 8559500 8559936 -180719618 + MSTB2 LTR MaLR 1 457 0 2575 272 65 26 chr6 8559936 8560377 -180719177 + L1ME LINE L1 2543 2965 -3115 782 200 0 0 chr6 8560393 8560513 -180719041 + FLAM_C SINE Alu 2 121 -22 809 117 45 16 chr6 8560523 8561143 -180718411 + (TA)n Simple_repeat Simple_repeat 1 637 0 430 244 29 96 chr6 8561144 8561353 -180718201 + L1M4 LINE L1 4647 4841 -1305 409 165 25 0 chr6 8561351 8561430 -180718124 + L1MC4 LINE L1 7962 8042 0 * 523 304 88 20 chr6 8561980 8562230 -180717324 + LTR16C LTR ERVL 225 491 0 422 261 152 62 chr6 8562235 8562763 -180716791 + L1ME LINE L1 2860 3434 -2646 254 350 44 37 chr6 8562952 8563246 -180716308 + L1ME LINE L1 3915 4210 -1870 422 286 111 78 chr6 8563259 8563450 -180716104 - MLT1J2 LTR MaLR -3 447 264 652 193 64 150 chr6 8563450 8563683 -180715871 - MER58C DNA MER1_type -2 213 1 422 286 111 78 chr6 8563683 8563889 -180715665 - MLT1J2 LTR MaLR -186 264 37 28 0 0 0 chr6 8563922 8563950 -180715604 + AT_rich Low_complexity Low_complexity 1 28 0 310 298 35 43 chr6 8564093 8564234 -180715320 + L1ME LINE L1 4401 4540 -1540 1926 152 0 7 chr6 8564235 8564525 -180715029 + AluJb SINE Alu 1 288 -24 22 0 0 0 chr6 8564655 8564677 -180714877 + AT_rich Low_complexity Low_complexity 1 22 0 242 278 97 16 chr6 8564779 8564902 -180714652 + MIR SINE MIR 34 171 -81 273 222 0 0 chr6 8565070 8565133 -180714421 + GA-rich Low_complexity Low_complexity 2 64 0 288 274 51 33 chr6 8565196 8565321 -180714233 + MIR SINE MIR 35 164 -72 519 250 48 48 chr6 8565335 8565437 -180714117 - MIR SINE MIR 0 262 161 228 67 0 0 chr6 8565437 8565467 -180714087 + (CAT)n Simple_repeat Simple_repeat 1 30 0 519 250 48 48 chr6 8565467 8565572 -180713982 - MIR SINE MIR -100 162 55 2230 64 7 3 chr6 8565655 8565971 -180713583 + AluY SINE Alu 1 317 0 220 280 0 0 chr6 8566128 8566178 -180713376 + MIR SINE MIR 201 250 -12 227 268 12 24 chr6 8566195 8566277 -180713277 + L2 LINE L2 3192 3272 0 186 143 0 0 chr6 8567182 8567217 -180712337 + (GA)n Simple_repeat Simple_repeat 1 35 0 2130 111 0 4 chr6 8568218 8568530 -180711024 - AluSc SINE Alu 0 311 1 1585 192 47 25 chr6 8569414 8569815 -180709739 - L1MDb LINE L1 -5197 1212 803 902 126 35 0 chr6 8569819 8569993 -180709561 + CT-rich Low_complexity Low_complexity 1 180 0 303 53 0 0 chr6 8569993 8570031 -180709523 + (TTTCC)n Simple_repeat Simple_repeat 4 41 0 2010 128 13 3 chr6 8570037 8570342 -180709212 - AluSx SINE Alu -4 308 1 1826 205 82 45 chr6 8570345 8570978 -180708576 - L1MDb LINE L1 -5595 814 27 369 323 51 31 chr6 8571689 8571884 -180707670 + L3 LINE CR1 1096 1294 -283 229 250 78 16 chr6 8571893 8571957 -180707597 - MER5A DNA MER1_type -108 81 14 2401 105 0 0 chr6 8571992 8572298 -180707256 - AluSq SINE Alu -7 306 1 228 204 8 45 chr6 8572385 8572517 -180707037 + GA-rich Low_complexity Low_complexity 4 130 0 700 238 58 0 chr6 8572953 8573125 -180706429 - MER5A DNA MER1_type 0 189 8 264 358 104 31 chr6 8573578 8573937 -180705617 + L2 LINE L2 2722 3054 -218 2132 136 3 0 chr6 8573937 8574245 -180705309 - AluSx SINE Alu -3 309 1 264 358 104 31 chr6 8574245 8574317 -180705237 + L2 LINE L2 3054 3119 -153 538 227 18 0 chr6 8574317 8574427 -180705127 - MER81 DNA DNA -2 112 1 264 358 104 31 chr6 8574427 8574491 -180705063 + L2 LINE L2 3119 3255 -17 1117 208 95 72 chr6 8575867 8576090 -180703464 - MLT1H1 LTR MaLR 0 555 318 2211 196 44 40 chr6 8576090 8576591 -180702963 + MLT1D LTR MaLR 1 503 -2 1117 208 95 72 chr6 8576591 8576756 -180702798 - MLT1H1 LTR MaLR -237 318 158 408 266 11 11 chr6 8576766 8576860 -180702694 - MLT1H1 LTR MaLR -483 107 14 2328 151 54 35 chr6 8578314 8578738 -180700816 - MSTB1 LTR MaLR 0 432 1 594 231 68 107 chr6 8579082 8579134 -180700420 - MLT1J LTR MaLR 0 511 458 1619 164 22 4 chr6 8579134 8579409 -180700145 + AluJb SINE Alu 1 280 -32 594 231 68 107 chr6 8579409 8579711 -180699843 - MLT1J LTR MaLR -53 458 171 648 211 0 0 chr6 8581290 8581404 -180698150 - AluY SINE Alu -81 230 117 213 94 0 0 chr6 8581971 8582003 -180697551 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1994 158 0 0 chr6 8582020 8582317 -180697237 - AluJb SINE Alu -15 297 1 294 276 32 83 chr6 8582697 8582914 -180696640 - L2 LINE L2 -252 3061 2856 1503 217 116 8 chr6 8583093 8583471 -180696083 + L1MA4A LINE L1 5623 6041 -262 * 1924 150 32 0 chr6 8583245 8583559 -180695995 + L1PB4 LINE L1 5810 6133 -23 620 66 0 11 chr6 8583565 8583656 -180695898 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 455 280 24 24 chr6 8583776 8583944 -180695610 - HAL1 LINE L1 -122 2385 2218 306 243 98 35 chr6 8583949 8584122 -180695432 - HAL1 LINE L1 -338 2169 1986 296 258 143 62 chr6 8584141 8584350 -180695204 - HAL1 LINE L1 -1862 645 420 351 147 40 133 chr6 8584385 8584535 -180695019 - HAL1 LINE L1 -2323 184 49 2114 94 0 69 chr6 8587715 8588035 -180691519 + AluSx SINE Alu 1 298 -14 229 279 25 13 chr6 8588461 8588540 -180691014 + L2 LINE L2 3232 3311 -2 2109 109 3 0 chr6 8588622 8588915 -180690639 - AluSx SINE Alu -18 294 1 513 225 53 64 chr6 8589049 8589236 -180690318 + pTR5 LTR ERV1 743 927 -1511 3221 144 217 60 chr6 8589537 8590251 -180689303 + LTR12 LTR ERV1 1 826 0 674 240 17 9 chr6 8590441 8590670 -180688884 - L1MB1 LINE L1 -1 6167 5879 2585 154 39 15 chr6 8590699 8591079 -180688475 + L1MB1 LINE L1 5403 5798 -370 342 67 0 0 chr6 8591079 8591124 -180688430 + (TA)n Simple_repeat Simple_repeat 2 46 0 2585 154 39 15 chr6 8591124 8591211 -180688343 + L1MB1 LINE L1 5798 5881 -287 225 319 53 53 chr6 8591213 8591326 -180688228 - MIR SINE MIR -99 163 51 410 241 0 0 chr6 8591364 8591472 -180688082 - L1M4 LINE L1 -1888 4258 4151 1634 248 21 19 chr6 8591496 8591920 -180687634 - L1M4 LINE L1 -1949 4197 3773 449 327 91 44 chr6 8592232 8592617 -180686937 + MLT1L LTR MaLR 112 514 -101 214 288 76 0 chr6 8592799 8592865 -180686689 + MER5A DNA MER1_type 115 185 -4 216 0 0 0 chr6 8593591 8593615 -180685939 + (CA)n Simple_repeat Simple_repeat 1 24 0 2127 116 3 28 chr6 8594154 8594473 -180685081 - AluSx SINE Alu -1 311 1 6439 173 34 3 chr6 8594484 8595940 -180683614 - L1MC1 LINE L1 0 6333 4812 522 0 0 0 chr6 8595940 8595998 -180683556 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 6439 173 34 3 chr6 8595998 8596191 -180683363 - L1MC1 LINE L1 -1521 4812 4626 276 313 108 33 chr6 8596267 8596481 -180683073 + L2 LINE L2 1766 1995 -1319 346 313 38 15 chr6 8596713 8596844 -180682710 + L2 LINE L2 3137 3270 -2 1515 230 86 24 chr6 8597717 8598751 -180680803 - L1MB8 LINE L1 -10 6168 4944 218 291 0 0 chr6 8599296 8599351 -180680203 - L2 LINE L2 -81 3191 3137 193 244 209 0 chr6 8599771 8599857 -180679697 + MIR SINE MIR 41 144 -118 1691 178 3 22 chr6 8601263 8601577 -180677977 - AluJb SINE Alu 0 312 5 2584 164 22 22 chr6 8602956 8603413 -180676141 - LTR32 LTR ERVL 0 471 15 232 304 174 50 chr6 8604172 8604448 -180675106 + L2 LINE L2 2887 3204 -68 249 33 0 0 chr6 8604448 8604478 -180675076 + (TC)n Simple_repeat Simple_repeat 1 30 0 232 304 174 50 chr6 8604478 8604500 -180675054 + L2 LINE L2 3204 3222 -50 2000 118 29 0 chr6 8604750 8605030 -180674524 - AluSx SINE Alu -19 293 6 26 0 0 0 chr6 8605276 8605302 -180674252 + AT_rich Low_complexity Low_complexity 1 26 0 1403 121 0 0 chr6 8605321 8605503 -180674051 - AluSx SINE Alu -130 182 1 357 24 0 0 chr6 8605986 8606028 -180673526 + (TCCCC)n Simple_repeat Simple_repeat 2 43 0 2471 28 0 0 chr6 8607487 8607886 -180671668 - L1P2 LINE L1 -608 5547 5149 310 224 35 24 chr6 8608162 8608247 -180671307 + L1MC2 LINE L1 5239 5324 -822 997 185 33 63 chr6 8608259 8608529 -180671025 + L1MC3 LINE L1 6564 6825 -960 5298 62 24 1 chr6 8608629 8609287 -180670267 - LTR12 LTR ERV1 -40 674 2 2496 204 9 8 chr6 8609287 8609817 -180669737 + L1 LINE L1 4534 5064 -1082 7637 134 45 3 chr6 8609926 8611274 -180668280 - L1M1 LINE L1 -3927 3638 2233 1186 187 103 11 chr6 8611381 8611643 -180667911 + L1MC2 LINE L1 5777 6062 -282 273 77 0 0 chr6 8611658 8611697 -180667857 + L1MA3 LINE L1 6267 6305 0 489 307 62 36 chr6 8611727 8612176 -180667378 - L1MDa LINE L1 -4815 1725 1265 1528 258 13 12 chr6 8613535 8614071 -180665483 + MLT2F LTR ERVL 3 584 -79 1119 178 50 78 chr6 8614259 8614540 -180665014 + L1MB1 LINE L1 5788 6060 -108 909 122 7 7 chr6 8614554 8614702 -180664852 + AluSg/x SINE Alu 165 312 0 363 170 44 41 chr6 8614740 8614869 -180664685 + L1MB1 LINE L1 6044 6167 -1 211 292 36 36 chr6 8614878 8615015 -180664539 + MIR SINE MIR 83 219 -43 357 24 0 0 chr6 8615114 8615156 -180664398 + (CA)n Simple_repeat Simple_repeat 1 42 0 937 174 37 5 chr6 8615587 8615777 -180663777 + MLT2B1 LTR ERVL 1 196 -324 372 85 0 0 chr6 8617223 8617270 -180662284 + (TCCCC)n Simple_repeat Simple_repeat 2 48 0 1995 122 59 0 chr6 8617270 8617556 -180661998 - AluSx SINE Alu -9 303 1 279 0 0 0 chr6 8617744 8617775 -180661779 + (CA)n Simple_repeat Simple_repeat 2 32 0 227 253 0 13 chr6 8617775 8617854 -180661700 - L1MC4 LINE L1 -1343 6699 6622 703 325 25 37 chr6 8617928 8618251 -180661303 - L3 LINE CR1 -15 1562 1244 542 221 190 58 chr6 8618507 8618733 -180660821 - L2 LINE L2 0 3313 3058 422 302 17 0 chr6 8618823 8618939 -180660615 - L3 LINE CR1 -420 1157 1040 3509 188 38 17 chr6 8619242 8619892 -180659662 + L1MC3 LINE L1 7058 7726 -59 1962 165 24 126 chr6 8619892 8620353 -180659201 + MLT2D LTR ERVL 1 414 0 3509 188 38 17 chr6 8620353 8620414 -180659140 + L1MC3 LINE L1 7726 7784 -1 243 246 18 0 chr6 8622396 8622453 -180657101 + L2 LINE L2 3214 3271 -1 8343 140 33 121 chr6 8623378 8625334 -180654220 - L1MA6 LINE L1 0 6300 4517 1377 150 17 0 chr6 8625334 8625567 -180653987 + Tigger1 DNA MER2_type 2 238 -2180 8343 140 33 121 chr6 8625567 8626647 -180652907 - L1MA6 LINE L1 -1783 4517 3344 9831 110 23 1 chr6 8626647 8628792 -180650762 - L1PA8A LINE L1 -1 6445 4277 18101 152 7 24 chr6 8628894 8629237 -180650317 - L1PA8A LINE L1 -2108 4353 4006 2354 84 0 16 chr6 8629237 8629545 -180650009 - AluY SINE Alu -4 307 5 18101 152 7 24 chr6 8629545 8630038 -180649516 - L1PA8A LINE L1 -2455 4006 3506 2230 71 7 4 chr6 8630038 8630355 -180649199 + AluY SINE Alu 1 318 0 18101 152 7 24 chr6 8630355 8633883 -180645671 - L1PA8A LINE L1 -2955 3506 2 2719 184 58 11 chr6 8633882 8634534 -180645020 - L1MA6 LINE L1 -2791 3355 2673 * 29 0 0 0 chr6 8634587 8634616 -180644938 + AT_rich Low_complexity Low_complexity 1 29 0 1542 199 3 14 chr6 8634659 8634950 -180644604 + AluJo SINE Alu 1 288 -24 835 233 44 0 chr6 8634973 8635201 -180644353 + L1MD1 LINE L1 5031 5268 -878 912 172 49 0 chr6 8635247 8635413 -180644141 + FRAM SINE Alu 1 163 -13 * 3394 161 58 67 chr6 8635411 8635976 -180643578 + L1MD1 LINE L1 5284 5841 -401 2039 121 9 16 chr6 8635976 8636291 -180643263 + AluSq SINE Alu 1 313 0 3394 161 58 67 chr6 8636291 8636537 -180643017 + L1MD1 LINE L1 5841 6088 -154 371 304 36 53 chr6 8636531 8636778 -180642776 - L1MC/D LINE L1 -2226 5582 5340 * 2160 163 23 3 chr6 8638111 8638460 -180641094 - MLT1A1 LTR MaLR 0 365 10 1977 175 117 51 chr6 8639863 8640315 -180639239 + LTR44 LTR ERV1 1 482 -37 459 0 0 0 chr6 8640316 8640367 -180639187 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 2667 175 119 52 chr6 8640367 8641110 -180638444 - LTR1B LTR ERV1 0 785 2 660 87 0 0 chr6 8641110 8641202 -180638352 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 1551 137 27 89 chr6 8641220 8641513 -180638041 - AluJo SINE Alu -37 275 1 244 171 0 0 chr6 8641513 8641554 -180638000 + LTR44 LTR ERV1 479 519 0 4039 207 118 30 chr6 8642378 8643528 -180636026 - Zaphod DNA AcHobo -3 4028 2741 2275 91 7 7 chr6 8643528 8643825 -180635729 - AluSg SINE Alu -13 297 1 4039 207 118 30 chr6 8643825 8644026 -180635528 - Zaphod DNA AcHobo -1290 2741 2559 1087 283 162 13 chr6 8644039 8644435 -180635119 - Zaphod DNA AcHobo -3475 556 102 2282 74 0 3 chr6 8644436 8644744 -180634810 - AluY SINE Alu 0 307 1 2147 115 3 70 chr6 8644905 8645300 -180634254 - L1PA4 LINE L1 0 6155 5804 222 91 0 0 chr6 8645348 8645381 -180634173 + (TG)n Simple_repeat Simple_repeat 1 33 0 829 224 50 0 chr6 8646110 8646289 -180633265 - MER5A DNA MER1_type 0 189 2 3553 71 9 11 chr6 8646686 8647138 -180632416 + L1PA10 LINE L1 5715 6165 -3 183 80 0 0 chr6 8649655 8649680 -180629874 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 212 180 34 11 chr6 8650090 8650179 -180629375 + (TA)n Simple_repeat Simple_repeat 2 92 0 2481 56 16 0 chr6 8650611 8650916 -180628638 + AluY SINE Alu 1 310 -1 2383 156 150 25 chr6 8651988 8652515 -180627039 - L1MB5 LINE L1 -6 6168 5576 195 296 28 14 chr6 8652664 8652735 -180626819 - MIR SINE MIR -120 142 71 1175 206 0 0 chr6 8653886 8654095 -180625459 - MER3 DNA MER1_type 0 209 1 2173 92 3 36 chr6 8654401 8654705 -180624849 - AluSq SINE Alu -19 294 1 278 370 120 25 chr6 8654713 8655364 -180624190 + L2 LINE L2 1759 2471 -843 516 208 19 0 chr6 8655364 8655470 -180624084 + MER81 DNA DNA 1 108 -6 411 38 0 0 chr6 8656115 8656168 -180623386 + (CA)n Simple_repeat Simple_repeat 2 54 0 518 329 108 30 chr6 8657003 8657511 -180622043 + L2 LINE L2 2032 2579 -735 213 279 279 13 chr6 8657513 8657739 -180621815 + L2 LINE L2 3028 3313 0 356 194 0 0 chr6 8658508 8658575 -180620979 - MIR SINE MIR 0 262 196 464 252 18 0 chr6 8659037 8659148 -180620406 - MIR SINE MIR -97 165 53 875 138 0 38 chr6 8659216 8659375 -180620179 + L1PA16 LINE L1 5913 6065 -101 393 248 67 0 chr6 8659512 8659617 -180619937 + MIR SINE MIR 150 261 -1 2059 125 7 14 chr6 8659663 8659960 -180619594 + AluSx SINE Alu 1 295 -17 399 257 117 35 chr6 8660942 8661113 -180618441 + L1ME4a LINE L1 5933 6117 -4 258 338 156 23 chr6 8661221 8661529 -180618025 + L2 LINE L2 2827 3175 -97 1876 127 167 9 chr6 8663373 8663697 -180615857 + THE1C LTR MaLR 1 375 0 11469 106 7 42 chr6 8663697 8665334 -180614220 + THE1C-int LTR MaLR 1 1580 0 2245 111 72 28 chr6 8665334 8665693 -180613861 + THE1C LTR MaLR 1 375 0 448 341 49 0 chr6 8665846 8666010 -180613544 + MIR SINE MIR 62 233 -29 505 206 89 67 chr6 8666063 8666243 -180613311 + L2 LINE L2 1605 1788 -1526 2781 68 3 3 chr6 8666289 8666628 -180612926 + L1PA6 LINE L1 5815 6153 -1 195 129 0 0 chr6 8666755 8666786 -180612768 + (CA)n Simple_repeat Simple_repeat 1 31 0 1723 271 65 52 chr6 8666987 8667659 -180611895 + L2 LINE L2 1811 2491 -823 954 227 49 0 chr6 8667659 8667862 -180611692 + MLT1F LTR MaLR 1 213 -354 1552 192 67 17 chr6 8667864 8668223 -180611331 - MLT1A2 LTR MaLR 0 374 1 1415 214 107 0 chr6 8668223 8668532 -180611022 + MLT1F LTR MaLR 199 540 -2 1295 261 177 13 chr6 8668534 8669236 -180610318 + L2 LINE L2 2487 3313 0 205 328 9 78 chr6 8669511 8669627 -180609927 + L3 LINE CR1 1431 1538 -39 2080 115 124 18 chr6 8670138 8670477 -180609077 - THE1C LTR MaLR 0 375 1 354 214 0 0 chr6 8671485 8671574 -180607980 + (CA)n Simple_repeat Simple_repeat 2 90 0 233 234 65 13 chr6 8671592 8671669 -180607885 - L2 LINE L2 -1220 2094 2014 1682 167 17 10 chr6 8671725 8672013 -180607541 + AluJo SINE Alu 3 292 -20 438 247 137 22 chr6 8672083 8672265 -180607289 + MER58C DNA MER1_type 1 203 -12 222 293 38 57 chr6 8672420 8672526 -180607028 - MER5B DNA MER1_type -12 166 63 1924 139 0 0 chr6 8672529 8672802 -180606752 - AluSx SINE Alu 0 312 40 219 200 0 0 chr6 8673006 8673046 -180606508 - L2 LINE L2 -10 3303 3264 209 108 27 0 chr6 8673152 8673189 -180606365 + (TGGA)n Simple_repeat Simple_repeat 2 39 0 7189 52 38 0 chr6 8673388 8674609 -180604945 + L1PA6 LINE L1 4869 6154 0 612 257 138 5 chr6 8675516 8675734 -180603820 + MIR SINE MIR 16 262 0 1440 152 41 104 chr6 8676028 8676145 -180603409 + AluJo SINE Alu 1 124 -188 207 0 0 0 chr6 8676145 8676168 -180603386 + (TC)n Simple_repeat Simple_repeat 1 23 0 414 0 0 0 chr6 8676169 8676215 -180603339 + (TA)n Simple_repeat Simple_repeat 2 47 0 1440 152 41 104 chr6 8676215 8676411 -180603143 + AluJo SINE Alu 123 296 -16 2969 199 38 5 chr6 8676437 8677039 -180602515 - L1MB7 LINE L1 -43 6141 5520 265 359 0 0 chr6 8677620 8677712 -180601842 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 251 313 0 26 chr6 8679310 8679425 -180600129 + L1MC5 LINE L1 7806 7917 -44 751 313 100 9 chr6 8679449 8679868 -180599686 + L2 LINE L2 1854 2310 -1004 2005 185 36 46 chr6 8679880 8680433 -180599121 - MLT2A2 LTR ERVL 0 554 1 479 313 171 20 chr6 8680454 8681127 -180598427 + L2 LINE L2 2335 3210 -103 198 176 0 0 chr6 8681211 8681245 -180598309 + MIR SINE MIR 217 250 -12 198 176 0 118 chr6 8681245 8681262 -180598292 + L2 LINE L2 3262 3306 -7 274 143 0 0 chr6 8682828 8682870 -180596684 + MLT1A1 LTR MaLR 2 43 -331 283 174 0 0 chr6 8682871 8682917 -180596637 + MLT1A1 LTR MaLR 158 203 -162 253 150 0 0 chr6 8682916 8682956 -180596598 + MLT1A2 LTR MaLR 166 205 -169 * 918 181 75 5 chr6 8682958 8683146 -180596408 + MLT1A2 LTR MaLR 173 373 -1 308 303 37 0 chr6 8683438 8683547 -180596007 - MIR SINE MIR -17 245 133 231 288 68 14 chr6 8683591 8683664 -180595890 - MIR SINE MIR -84 124 48 511 308 80 83 chr6 8684420 8684781 -180594773 - L2 LINE L2 -40 3232 2873 858 320 76 15 chr6 8684916 8685310 -180594244 - L2 LINE L2 -649 2665 2248 185 279 77 48 chr6 8685842 8685946 -180593608 - L2 LINE L2 -40 3273 3167 2161 127 0 13 chr6 8686291 8686607 -180592947 + AluSx SINE Alu 1 312 0 2157 83 42 10 chr6 8687230 8687518 -180592036 + AluSx SINE Alu 1 297 -15 282 29 0 0 chr6 8688208 8688243 -180591311 + (TG)n Simple_repeat Simple_repeat 2 36 0 35 24 0 0 chr6 8688372 8688414 -180591140 + AT_rich Low_complexity Low_complexity 1 42 0 2091 136 0 16 chr6 8688487 8688803 -180590751 + AluJb SINE Alu 1 311 -1 21 0 0 0 chr6 8689212 8689233 -180590321 + AT_rich Low_complexity Low_complexity 1 21 0 251 320 40 0 chr6 8689688 8689763 -180589791 + L2 LINE L2 3150 3227 -45 290 262 95 32 chr6 8690008 8690134 -180589420 + MER63A DNA MER1_type 69 202 -8 251 203 257 0 chr6 8691063 8691137 -180588417 + MER63 DNA MER1_type 1 719 -117 1148 171 38 79 chr6 8691137 8691453 -180588101 - MER58B DNA MER1_type 0 341 39 265 266 46 15 chr6 8691454 8691580 -180587974 + MER63 DNA MER1_type 695 1052 -8 2312 205 31 98 chr6 8691764 8692502 -180587052 - LTR8 LTR ERV1 -2 689 1 314 214 0 67 chr6 8692731 8692820 -180586734 - MER94 DNA DNA -40 94 12 367 202 32 11 chr6 8693466 8693560 -180585994 + MER103 DNA DNA 68 163 -3 1728 178 3 28 chr6 8693754 8694074 -180585480 - AluJb SINE Alu 0 312 1 388 312 159 6 chr6 8694898 8695055 -180584499 + MER5A DNA MER1_type 9 189 0 193 304 145 0 chr6 8695077 8695146 -180584408 + MIR SINE MIR 119 197 -65 1666 161 25 6 chr6 8695302 8695626 -180583928 + MLT1B LTR MaLR 1 330 -60 948 229 78 0 chr6 8695666 8695911 -180583643 + Tigger7 DNA MER2_type 1 264 -469 435 248 10 0 chr6 8695906 8696007 -180583547 + Tigger7 DNA MER2_type 2386 2487 0 * 187 235 41 85 chr6 8696520 8696625 -180582929 - MIR SINE MIR -66 196 118 1183 126 9 19 chr6 8696625 8696839 -180582715 + L1MA8 LINE L1 6076 6287 -4 187 235 41 85 chr6 8696839 8696885 -180582669 - MIR SINE MIR -144 118 71 1926 137 17 10 chr6 8699403 8699695 -180579859 + AluSx SINE Alu 1 294 -18 1091 191 70 101 chr6 8700081 8700479 -180579075 - MLT1B LTR MaLR 0 390 5 414 302 99 26 chr6 8700864 8701056 -180578498 + MIR3 SINE MIR 2 207 -1 349 322 16 71 chr6 8702497 8702680 -180576874 + MER5A DNA MER1_type 17 189 0 3070 211 49 54 chr6 8702734 8704596 -180574958 + L1ME1 LINE L1 4307 6161 -5 233 303 132 0 chr6 8705396 8705472 -180574082 - MIR SINE MIR -90 118 33 2652 119 5 121 chr6 8705939 8706023 -180573531 + MER84 LTR ERVI 1 93 -414 2298 184 44 75 chr6 8706023 8706654 -180572900 - LTR9 LTR ERV1 0 612 1 2652 119 5 121 chr6 8706654 8707141 -180572413 + MER84 LTR ERVI 93 506 -1 221 319 180 50 chr6 8707166 8707671 -180571883 + L2 LINE L2 2214 2784 -530 1190 184 104 43 chr6 8708227 8708601 -180570953 - L1MC2 LINE L1 0 6344 5948 1906 132 0 35 chr6 8708601 8708889 -180570665 - AluSx SINE Alu -11 301 24 333 295 62 62 chr6 8710876 8711103 -180568451 - L1ME3A LINE L1 -2 6164 5938 886 254 102 19 chr6 8711144 8711842 -180567712 - L1ME3A LINE L1 -218 5946 5152 * 1741 161 28 43 chr6 8711830 8712252 -180567302 - L1MD3 LINE L1 0 7995 7580 1101 285 85 34 chr6 8712447 8712954 -180566600 - L1ME3A LINE L1 -1225 4921 4350 2274 110 0 0 chr6 8712954 8713253 -180566301 - AluSx SINE Alu -13 299 1 1101 285 85 34 chr6 8713253 8713619 -180565935 - L1ME3A LINE L1 -1796 4350 4004 462 282 76 15 chr6 8713625 8713888 -180565666 - L1ME3A LINE L1 -2677 3469 3173 1731 174 3 40 chr6 8713888 8714209 -180565345 - AluJo SINE Alu -3 309 1 462 282 76 15 chr6 8714209 8714338 -180565216 - L1ME3A LINE L1 -2973 3173 3053 269 258 222 24 chr6 8714361 8714528 -180565026 - MIR SINE MIR -43 219 20 386 330 164 30 chr6 8714740 8715315 -180564239 + L2 LINE L2 1979 2630 -684 237 289 26 0 chr6 8715946 8716022 -180563532 - MIR SINE MIR -88 174 97 2031 152 11 19 chr6 8716234 8716602 -180562952 - MER47A DNA MER2_type -1 365 1 253 260 80 20 chr6 8717270 8717370 -180562184 + MIR SINE MIR 37 142 -66 255 140 0 0 chr6 8717999 8718049 -180561505 + (GA)n Simple_repeat Simple_repeat 1 50 0 421 288 77 56 chr6 8718311 8718648 -180560906 + L1MEd LINE L1 811 1154 -4965 472 265 114 30 chr6 8720181 8720347 -180559207 + MER5A DNA MER1_type 9 188 -1 322 316 120 8 chr6 8720417 8720534 -180559020 + L2 LINE L2 3143 3272 0 546 229 50 69 chr6 8720883 8721101 -180558453 + MER21B LTR ERV1 183 396 -467 601 165 106 41 chr6 8721397 8721422 -180558132 - Ricksha DNA DNA -2880 366 344 2770 72 59 56 chr6 8721422 8721461 -180558093 - MLT2A1 LTR ERVL 0 444 407 745 62 39 0 chr6 8721461 8721590 -180557964 + (TA)n Simple_repeat Simple_repeat 2 135 0 2770 72 59 56 chr6 8721590 8721993 -180557561 - MLT2A1 LTR ERVL -37 407 1 31120 59 12 3 chr6 8721993 8727551 -180552003 - HERVL-A1 LTR ERVL 0 5654 1 601 165 106 41 chr6 8721993 8722137 -180557417 - Ricksha DNA DNA -2902 344 186 * 2580 75 35 132 chr6 8727551 8728043 -180551511 - MLT2A1 LTR ERVL 0 444 1 1138 274 86 61 chr6 8728044 8728669 -180550885 - MER21B LTR ERV1 -193 670 30 198 0 0 0 chr6 8728788 8728810 -180550744 + (TTG)n Simple_repeat Simple_repeat 1 22 0 969 180 38 38 chr6 8729084 8729345 -180550209 - MLT1A1 LTR MaLR 0 365 105 1725 169 77 6 chr6 8730119 8730457 -180549097 + MLT1A1 LTR MaLR 3 364 -1 30 0 0 0 chr6 8730562 8730592 -180548962 + AT_rich Low_complexity Low_complexity 1 30 0 2166 148 3 26 chr6 8730770 8731115 -180548439 - MER1B DNA MER1_type 0 337 1 23 0 0 0 chr6 8732930 8732953 -180546601 + AT_rich Low_complexity Low_complexity 1 23 0 292 213 47 147 chr6 8733190 8733401 -180546153 - L2 LINE L2 -2 3311 3122 232 253 218 59 chr6 8733638 8733840 -180545714 + L2 LINE L2 3039 3272 0 283 250 53 0 chr6 8733937 8734013 -180545541 + MLT1J LTR MaLR 106 185 -326 691 201 107 0 chr6 8734149 8734318 -180545236 + MIR SINE MIR 2 188 -74 213 296 157 17 chr6 8734480 8734595 -180544959 + L2 LINE L2 3137 3267 -5 21 89 0 0 chr6 8735988 8736044 -180543510 + AT_rich Low_complexity Low_complexity 1 56 0 207 0 0 0 chr6 8736131 8736154 -180543400 + (CAG)n Simple_repeat Simple_repeat 1 23 0 618 301 53 22 chr6 8736166 8736392 -180543162 - MIR SINE MIR -27 235 3 258 32 0 0 chr6 8736625 8736656 -180542898 + (CA)n Simple_repeat Simple_repeat 2 32 0 346 256 75 25 chr6 8736794 8736993 -180542561 + L1M4 LINE L1 4414 4622 -1524 358 274 201 11 chr6 8737262 8737536 -180542018 + L1M4 LINE L1 4977 5302 -844 29 47 0 0 chr6 8739439 8739482 -180540072 + AT_rich Low_complexity Low_complexity 1 43 0 2140 114 0 0 chr6 8740147 8740457 -180539097 - AluSg SINE Alu 0 310 1 1075 170 0 0 chr6 8741139 8741310 -180538244 - AluSg/x SINE Alu -9 303 133 2311 73 3 27 chr6 8742414 8742714 -180536840 - AluSq SINE Alu -20 293 1 22 0 0 0 chr6 8743243 8743265 -180536289 + AT_rich Low_complexity Low_complexity 1 22 0 269 306 0 0 chr6 8743535 8743607 -180535947 + MIR3 SINE MIR 85 156 -52 1120 160 5 5 chr6 8744300 8744494 -180535060 - MER46B DNA MER2_type 0 236 43 2470 93 8 8 chr6 8744494 8744847 -180534707 + THE1A LTR MaLR 1 353 -2 4951 115 24 0 chr6 8744850 8745569 -180533985 + THE1A-int LTR MaLR 1 736 -844 560 158 185 7 chr6 8745586 8745732 -180533822 - MER46B DNA MER2_type -189 47 1 29 60 0 0 chr6 8747022 8747072 -180532482 + AT_rich Low_complexity Low_complexity 1 50 0 1939 152 30 0 chr6 8748752 8748872 -180530682 + AluJo SINE Alu 1 116 -196 252 0 0 0 chr6 8748872 8748900 -180530654 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 1939 152 30 0 chr6 8748900 8749081 -180530473 + AluJo SINE Alu 116 311 -1 584 270 110 30 chr6 8750665 8750902 -180528652 + MIR SINE MIR 2 257 -5 648 270 128 47 chr6 8750999 8751343 -180528211 + L2 LINE L2 2244 2615 -699 29 0 0 0 chr6 8752184 8752213 -180527341 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 8752317 8752338 -180527216 + AT_rich Low_complexity Low_complexity 1 21 0 207 200 20 0 chr6 8753564 8753614 -180525940 + CT-rich Low_complexity Low_complexity 2 52 0 579 302 156 21 chr6 8755029 8755450 -180524104 + L2 LINE L2 2581 3070 -243 2150 107 4 0 chr6 8755632 8755913 -180523641 - AluSx SINE Alu -28 284 3 561 339 103 21 chr6 8756141 8756480 -180523074 + LTR16C LTR ERVL 123 489 -2 1078 113 17 0 chr6 8756861 8757038 -180522516 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 585 188 22 28 chr6 8757055 8757236 -180522318 + CT-rich Low_complexity Low_complexity 1 180 0 1814 135 57 7 chr6 8757236 8757518 -180522036 - AluSx SINE Alu -16 296 1 483 303 7 7 chr6 8757538 8757680 -180521874 + HERVL LTR ERVL 4471 4612 -1042 396 0 0 0 chr6 8757741 8757785 -180521769 + (CA)n Simple_repeat Simple_repeat 2 45 0 508 279 7 0 chr6 8757948 8758084 -180521470 - L2 LINE L2 -1208 2106 1970 700 313 36 24 chr6 8758134 8758383 -180521171 + MIR SINE MIR 9 260 -2 501 293 54 20 chr6 8758570 8758717 -180520837 - L2 LINE L2 -4 3268 3117 1508 172 19 14 chr6 8759157 8759239 -180520315 - MER33 DNA MER1_type -2261 324 244 2243 99 0 7 chr6 8759239 8759541 -180520013 + AluSx SINE Alu 1 300 -12 1508 172 19 14 chr6 8759541 8759793 -180519761 - MER33 DNA MER1_type -2341 244 1 1795 157 0 63 chr6 8759849 8760181 -180519373 + AluJb SINE Alu 1 311 -1 1854 128 75 12 chr6 8761041 8761376 -180518178 - MER46B DNA MER2_type -1 235 5 631 157 26 9 chr6 8761418 8761533 -180518021 - MLT1D LTR MaLR 0 505 389 527 216 0 0 chr6 8761534 8761636 -180517918 + FLAM_C SINE Alu 5 106 -37 206 31 0 31 chr6 8761661 8761693 -180517861 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1043 206 58 51 chr6 8761693 8761743 -180517811 - MLT1D LTR MaLR -102 403 355 4265 108 15 11 chr6 8761743 8762353 -180517201 - LTR9 LTR ERV1 0 612 1 1043 206 58 51 chr6 8762353 8762578 -180516976 - MLT1D LTR MaLR -150 355 126 4907 57 2 0 chr6 8762581 8763191 -180516363 - L1PA6 LINE L1 0 6154 5544 8064 69 3 2 chr6 8763191 8764255 -180515299 - L1PA6 LINE L1 -3382 2764 1700 4584 97 14 6 chr6 8764263 8764921 -180514633 - PABL_B LTR ERV1 0 667 5 332 307 104 43 chr6 8764974 8765137 -180514417 - LTR16C LTR ERVL -223 268 96 2102 254 11 20 chr6 8765147 8765381 -180514173 - MER90 LTR ERV1 -25 550 315 2290 96 3 3 chr6 8765381 8765684 -180513870 - AluSg SINE Alu -7 303 1 2102 254 11 20 chr6 8765684 8766004 -180513550 - MER90 LTR ERV1 -260 315 1 1955 229 44 44 chr6 8766153 8766673 -180512881 - MLT1E3 LTR MaLR 0 624 105 1872 196 35 84 chr6 8766707 8766986 -180512568 - L1ME1 LINE L1 -306 5860 5622 2337 87 6 6 chr6 8766986 8767297 -180512257 + AluSq SINE Alu 1 311 -2 1872 196 35 84 chr6 8767297 8767588 -180511966 - L1ME1 LINE L1 -544 5622 5318 509 208 0 0 chr6 8767640 8767760 -180511794 - L1MA9 LINE L1 -33 6279 6160 * 1025 202 42 21 chr6 8767753 8767961 -180511593 - L1ME1 LINE L1 -844 5302 5083 507 113 0 0 chr6 8767961 8768041 -180511513 + MADE1 DNA Mariner 1 80 0 1025 202 42 21 chr6 8768041 8768164 -180511390 - L1ME1 LINE L1 -1063 5083 4964 370 245 29 22 chr6 8768160 8768299 -180511255 - L1M1 LINE L1 -4640 2925 2786 * 32 81 0 0 chr6 8768827 8768901 -180510653 + AT_rich Low_complexity Low_complexity 1 74 0 30 59 0 0 chr6 8769062 8769113 -180510441 + AT_rich Low_complexity Low_complexity 1 51 0 216 158 0 0 chr6 8770079 8770117 -180509437 + (TATG)n Simple_repeat Simple_repeat 1 38 0 186 43 0 0 chr6 8770117 8770140 -180509414 + (CA)n Simple_repeat Simple_repeat 1 23 0 2169 123 3 0 chr6 8770725 8771026 -180508528 - AluSx SINE Alu -6 306 5 200 407 0 0 chr6 8771899 8771980 -180507574 + MIR SINE MIR 16 96 -112 265 296 209 26 chr6 8772135 8772250 -180507304 + L2 LINE L2 3137 3272 0 26 0 0 0 chr6 8772743 8772769 -180506785 + AT_rich Low_complexity Low_complexity 1 26 0 409 302 259 31 chr6 8773651 8774002 -180505552 + L3 LINE CR1 1132 1562 -15 439 77 0 0 chr6 8774359 8774424 -180505130 - L1PA16 LINE L1 -4 7600 7536 14018 214 28 27 chr6 8774425 8776698 -180502856 - L1PA16 LINE L1 -105 7499 5231 2035 136 0 3 chr6 8776698 8776992 -180502562 - AluSx SINE Alu -17 295 3 14018 214 28 27 chr6 8776992 8777805 -180501749 - L1PA16 LINE L1 -2373 5231 4421 1920 159 0 0 chr6 8777805 8778113 -180501441 - AluSx SINE Alu -4 308 1 14018 214 28 27 chr6 8778113 8779315 -180500239 - L1PA16 LINE L1 -3183 4421 3198 2048 154 0 0 chr6 8779315 8779620 -180499934 - AluSx SINE Alu -7 305 1 14018 214 28 27 chr6 8779620 8780617 -180498937 - L1PA16 LINE L1 -4406 3198 2204 27 62 0 0 chr6 8781593 8781641 -180497913 + AT_rich Low_complexity Low_complexity 1 48 0 2080 152 82 14 chr6 8781695 8782058 -180497496 - L1MC2 LINE L1 -170 6174 5778 204 40 0 0 chr6 8782058 8782083 -180497471 + (GCATG)n Simple_repeat Simple_repeat 5 29 0 2080 152 82 14 chr6 8782083 8782133 -180497421 - L1MC2 LINE L1 -566 5778 5733 28 48 0 0 chr6 8782326 8782368 -180497186 + AT_rich Low_complexity Low_complexity 1 42 0 1568 206 21 45 chr6 8782521 8782895 -180496659 + MLT1A1 LTR MaLR 1 365 0 198 0 0 0 chr6 8782939 8782961 -180496593 + (A)n Simple_repeat Simple_repeat 1 22 0 995 328 22 9 chr6 8782961 8783278 -180496276 - L3 LINE CR1 -25 1552 1232 500 263 8 8 chr6 8783398 8783516 -180496038 - L2 LINE L2 0 3272 3155 215 433 0 0 chr6 8783572 8783706 -180495848 - L2 LINE L2 -335 2978 2845 371 123 37 49 chr6 8783721 8783802 -180495752 + L1MA5A LINE L1 6218 6297 0 1962 232 88 17 chr6 8783808 8784330 -180495224 + MLT1F1 LTR MaLR 9 567 0 483 265 123 0 chr6 8784338 8784508 -180495046 - MLT1L LTR MaLR -1 614 424 1119 275 109 73 chr6 8784693 8784899 -180494655 - L2 LINE L2 -791 2523 2326 2103 98 11 21 chr6 8784899 8785186 -180494368 - AluSq SINE Alu -27 286 3 1119 275 109 73 chr6 8785186 8785884 -180493670 - L2 LINE L2 -988 2326 1586 660 272 94 22 chr6 8785998 8786222 -180493332 + MIR SINE MIR 2 241 -21 274 346 52 52 chr6 8789596 8789732 -180489822 - L2 LINE L2 -19 3253 3118 420 277 42 43 chr6 8789812 8790025 -180489529 - MIR SINE MIR -12 250 33 344 138 15 0 chr6 8790315 8790380 -180489174 + (CA)n Simple_repeat Simple_repeat 2 67 0 1642 135 97 4 chr6 8790734 8791026 -180488528 - AluSx SINE Alu 0 316 1 1193 279 59 20 chr6 8791072 8791563 -180487991 - L1ME3A LINE L1 -280 5890 5381 183 42 0 0 chr6 8791663 8791687 -180487867 + (TTG)n Simple_repeat Simple_repeat 2 25 0 985 185 6 0 chr6 8791689 8791851 -180487703 - AluJb SINE Alu -15 297 135 1997 127 14 46 chr6 8791863 8792210 -180487344 - THE1C LTR MaLR -39 336 1 805 156 0 0 chr6 8792230 8792352 -180487202 - AluJb SINE Alu -190 122 1 1319 289 90 48 chr6 8792355 8793783 -180485771 - L1ME3A LINE L1 -865 5281 3794 1177 195 71 68 chr6 8793772 8793896 -180485658 - L1M4 LINE L1 -895 5645 5523 * 1609 157 38 11 chr6 8793896 8794183 -180485371 - AluSx SINE Alu -17 295 1 1177 195 71 68 chr6 8794183 8794483 -180485071 - L1M4 LINE L1 -1017 5523 5220 1299 276 126 31 chr6 8794597 8795141 -180484413 - MER77 LTR ERV1 -4 601 54 559 233 105 9 chr6 8795247 8795475 -180484079 - L1MEc LINE L1 -2591 3949 3700 2486 243 50 95 chr6 8795482 8795717 -180483837 - L1MEc LINE L1 -2994 3546 3302 1784 151 3 20 chr6 8795717 8796009 -180483545 + AluJb SINE Alu 5 291 -21 2486 243 50 95 chr6 8796009 8797196 -180482358 - L1MEc LINE L1 -3238 3302 2063 1853 102 14 0 chr6 8797196 8797471 -180482083 - L1MA3 LINE L1 0 6305 6027 2486 243 50 95 chr6 8797471 8797528 -180482026 - L1MEc LINE L1 -4477 2063 2005 2017 131 0 0 chr6 8797528 8797826 -180481728 + AluSp SINE Alu 1 298 -15 2486 243 50 95 chr6 8797826 8798903 -180480651 - L1MEc LINE L1 -4535 2005 1137 25 31 0 0 chr6 8798921 8798953 -180480601 + AT_rich Low_complexity Low_complexity 1 32 0 1968 248 72 22 chr6 8799095 8799647 -180479907 - L1MEc LINE L1 -5934 606 27 1336 286 54 20 chr6 8799656 8800393 -180479161 - L1MEc LINE L1 -5571 825 34 549 313 62 62 chr6 8800393 8800491 -180479063 - L1MDa LINE L1 -4455 1674 1577 411 56 0 0 chr6 8800491 8800545 -180479009 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 549 313 62 62 chr6 8800545 8800916 -180478638 - L1MDa LINE L1 -4551 1578 1205 551 276 21 72 chr6 8800926 8801314 -180478240 - L1MDa LINE L1 -4908 1211 844 5681 207 47 33 chr6 8803260 8805671 -180473883 + L1MB7 LINE L1 3730 6168 -16 21 71 0 0 chr6 8805988 8806030 -180473524 + AT_rich Low_complexity Low_complexity 1 42 0 2224 102 0 37 chr6 8807091 8807415 -180472139 + AluSx SINE Alu 1 312 0 306 310 17 9 chr6 8807552 8807668 -180471886 + MIR SINE MIR 140 256 -6 4933 54 6 2 chr6 8807680 8808310 -180471244 - L1P LINE L1 -1715 4431 3799 886 60 8 45 chr6 8808262 8808395 -180471159 + L1PA4 LINE L1 6027 6154 -1 * 537 299 50 85 chr6 8808447 8808633 -180470921 - MLT1J LTR MaLR -52 459 291 2131 116 0 0 chr6 8808633 8808925 -180470629 + AluSx SINE Alu 6 297 -15 537 299 50 85 chr6 8808925 8809102 -180470452 - MLT1J LTR MaLR -220 291 109 23 54 0 0 chr6 8809267 8809304 -180470250 + AT_rich Low_complexity Low_complexity 1 37 0 325 350 88 26 chr6 8809364 8809670 -180469884 + L1M4 LINE L1 3584 3908 -2238 244 309 90 50 chr6 8810101 8810667 -180468887 + L1M4 LINE L1 4488 5076 -1070 322 288 73 14 chr6 8810763 8810903 -180468651 + MER20 DNA MER1_type 46 195 -24 643 219 71 129 chr6 8811681 8811943 -180467611 - MLT1L LTR MaLR -27 588 236 237 276 14 7 chr6 8812010 8812093 -180467461 + GA-rich Low_complexity Low_complexity 1 146 0 375 227 277 7 chr6 8812106 8812247 -180467307 - MER5A DNA MER1_type -2 187 9 471 244 70 70 chr6 8813165 8813337 -180466217 + MER91B DNA MER1_type 11 182 -8 514 133 14 147 chr6 8813724 8813867 -180465687 + LOR1-int LTR ERV1 6830 6953 -1167 207 0 0 0 chr6 8813880 8813903 -180465651 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6678 110 20 3 chr6 8813908 8815685 -180463869 - L1PA8 LINE L1 -15 6157 4349 1981 113 3 0 chr6 8815699 8815983 -180463571 + L1P LINE L1 4707 4991 -1155 5025 104 1 1 chr6 8815991 8816702 -180462852 - L1PA8 LINE L1 -1800 4346 3636 1967 147 20 11 chr6 8816702 8817050 -180462504 + MER72 LTR ERV1 344 694 -28 22 0 0 0 chr6 8817050 8817072 -180462482 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 8817081 8817102 -180462452 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 8818320 8818341 -180461213 + AT_rich Low_complexity Low_complexity 1 21 0 2081 123 3 19 chr6 8818973 8819281 -180460273 + AluSx SINE Alu 1 303 -9 1257 316 89 12 chr6 8819349 8819833 -180459721 + MLT1G1 LTR MaLR 75 595 0 935 220 16 0 chr6 8820453 8820639 -180458915 - MER5A DNA MER1_type 0 189 1 253 286 18 0 chr6 8820748 8820804 -180458750 - L2 LINE L2 -11 3261 3205 21 36 0 0 chr6 8822267 8822295 -180457259 + AT_rich Low_complexity Low_complexity 1 28 0 324 70 0 0 chr6 8822620 8822663 -180456891 + (TG)n Simple_repeat Simple_repeat 1 43 0 506 280 21 38 chr6 8824058 8824244 -180455310 + MIR SINE MIR 60 242 -20 2057 143 125 13 chr6 8825133 8825518 -180454036 + MSTA LTR MaLR 1 428 0 365 22 0 0 chr6 8825627 8825673 -180453881 - MADE1 DNA Mariner -1 79 34 22 0 0 0 chr6 8826271 8826293 -180453261 + AT_rich Low_complexity Low_complexity 1 22 0 652 216 242 5 chr6 8826304 8826498 -180453056 + MIR SINE MIR 2 241 -21 192 179 0 0 chr6 8826959 8826998 -180452556 + (CAA)n Simple_repeat Simple_repeat 1 39 0 783 298 129 51 chr6 8827526 8828077 -180451477 - L1ME4a LINE L1 -48 6073 5480 612 336 14 14 chr6 8828108 8828316 -180451238 + MIR SINE MIR 55 262 0 253 263 66 13 chr6 8828338 8828414 -180451140 - L1ME4a LINE L1 -659 5462 5383 2256 101 0 0 chr6 8828437 8828734 -180450820 - AluSg SINE Alu -13 297 1 395 310 91 5 chr6 8828786 8828973 -180450581 + LTR16A LTR ERVL 1 203 -247 1723 172 8 87 chr6 8828974 8829352 -180450202 - MER7A DNA MER2_type 0 346 1 383 253 120 90 chr6 8829352 8829584 -180449970 + LTR16A LTR ERVL 203 441 -9 252 226 12 24 chr6 8829747 8829831 -180449723 - L1MB8 LINE L1 -37 6141 6059 22 35 0 0 chr6 8830261 8830290 -180449264 + AT_rich Low_complexity Low_complexity 1 29 0 620 165 132 8 chr6 8830297 8830418 -180449136 + FRAM SINE Alu 23 158 -18 2123 125 0 7 chr6 8830711 8831016 -180448538 + AluSx SINE Alu 1 303 -9 255 215 13 25 chr6 8831021 8831100 -180448454 + L1MB8 LINE L1 6059 6136 -42 23 33 0 0 chr6 8831250 8831280 -180448274 + AT_rich Low_complexity Low_complexity 1 30 0 657 181 9 0 chr6 8832055 8832171 -180447383 + FLAM_C SINE Alu 1 117 -16 24 32 0 0 chr6 8832347 8832378 -180447176 + AT_rich Low_complexity Low_complexity 1 31 0 223 290 43 0 chr6 8834461 8834530 -180445024 - MIR SINE MIR -13 249 178 303 250 0 0 chr6 8834639 8834711 -180444843 + L1ME1 LINE L1 28 99 -6297 234 0 0 0 chr6 8834722 8834748 -180444806 + (A)n Simple_repeat Simple_repeat 1 26 0 4604 271 72 17 chr6 8834750 8837587 -180441967 + L1ME1 LINE L1 1308 4277 -1938 2373 226 104 43 chr6 8837592 8838815 -180440739 + L1ME1 LINE L1 4772 6099 -136 2203 86 0 7 chr6 8838815 8839095 -180440459 + AluSc SINE Alu 1 278 -31 253 0 0 0 chr6 8839095 8839123 -180440431 + (CAAA)n Simple_repeat Simple_repeat 1 156 0 2373 226 104 43 chr6 8839123 8839264 -180440290 + L1ME1 LINE L1 6099 6230 -5 1186 110 0 0 chr6 8839411 8839584 -180439970 + L1PA8A LINE L1 3764 3936 -2210 307 107 0 0 chr6 8839581 8839637 -180439917 + L1 LINE L1 4794 4849 -1297 * 3116 103 9 0 chr6 8839643 8840098 -180439456 + L1PA8A LINE L1 4143 4601 -1545 5879 91 16 17 chr6 8840099 8841534 -180438020 + L1PA8A LINE L1 4690 6128 -3 34 0 0 0 chr6 8841534 8841568 -180437986 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr6 8841723 8841745 -180437809 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr6 8841882 8841903 -180437651 + (T)n Simple_repeat Simple_repeat 1 21 0 247 268 24 24 chr6 8842507 8842606 -180436948 - MER5A DNA MER1_type -87 102 4 817 269 197 14 chr6 8842700 8843132 -180436422 - MLT1J LTR MaLR 0 511 1 265 311 78 11 chr6 8843185 8843275 -180436279 + MIR3 SINE MIR 63 158 -50 22 0 0 0 chr6 8844358 8844380 -180435174 + AT_rich Low_complexity Low_complexity 1 22 0 991 238 135 82 chr6 8844519 8845247 -180434307 - LTR41 LTR ERVL -7 766 1 249 327 58 29 chr6 8845473 8845577 -180433977 - MIR3 SINE MIR -36 172 66 696 273 98 35 chr6 8845584 8845870 -180433684 - L2 LINE L2 -4 3309 3006 354 123 0 0 chr6 8849365 8849422 -180430132 + (TG)n Simple_repeat Simple_repeat 1 57 0 8762 129 21 9 chr6 8849870 8851241 -180428313 + Tigger1 DNA MER2_type 31 1417 -1001 2418 151 47 7 chr6 8851238 8851662 -180427892 + Tigger1 DNA MER2_type 1977 2417 -1 * 215 286 39 39 chr6 8852275 8852352 -180427202 + MIR SINE MIR 2 78 -184 342 315 142 6 chr6 8852496 8852658 -180426896 + MLT1J2 LTR MaLR 124 307 -143 451 317 116 9 chr6 8853120 8853344 -180426210 - MIR SINE MIR -7 255 8 744 305 141 14 chr6 8854096 8854569 -180424985 - L2 LINE L2 -4 3309 2768 257 325 60 0 chr6 8854583 8854700 -180424854 - MIR SINE MIR -65 197 74 546 314 50 0 chr6 8854853 8855012 -180424542 - MIR SINE MIR -73 189 23 1994 142 3 7 chr6 8855158 8855454 -180424100 - AluSx SINE Alu -15 297 3 429 264 82 43 chr6 8855874 8856041 -180423513 - L1MEd LINE L1 -4880 1239 1055 1839 159 0 26 chr6 8856041 8856349 -180423205 - AluJo SINE Alu -12 300 1 429 264 82 43 chr6 8856349 8856461 -180423093 - L1MEd LINE L1 -5064 1055 949 1010 223 26 108 chr6 8856477 8856685 -180422869 - L1ME2 LINE L1 -8 6156 5997 2593 43 3 0 chr6 8856685 8856986 -180422568 + AluY SINE Alu 1 302 -9 1010 223 26 108 chr6 8856986 8857195 -180422359 - L1ME2 LINE L1 -167 5997 5773 877 299 121 16 chr6 8858422 8858860 -180420694 + L1ME LINE L1 740 1223 -5200 630 234 100 65 chr6 8858885 8859432 -180420122 + L1ME LINE L1 1291 1833 -4887 1586 238 26 40 chr6 8859459 8860185 -180419369 + L1ME LINE L1 5750 6458 -503 207 69 0 0 chr6 8860185 8860214 -180419340 + (CA)n Simple_repeat Simple_repeat 2 30 0 1586 238 26 40 chr6 8860214 8860325 -180419229 + L1ME LINE L1 6458 6569 -392 22 70 0 0 chr6 8860418 8860461 -180419093 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr6 8860677 8860702 -180418852 + AT_rich Low_complexity Low_complexity 1 25 0 4374 186 25 31 chr6 8860836 8861682 -180417872 - MER21B LTR ERV1 -22 841 1 268 298 35 94 chr6 8863999 8864170 -180415384 + L2 LINE L2 2953 3113 -159 2109 112 0 0 chr6 8864216 8864503 -180415051 + AluSg SINE Alu 21 307 -3 36 40 0 0 chr6 8864582 8864632 -180414922 + AT_rich Low_complexity Low_complexity 1 50 0 2042 128 0 28 chr6 8865216 8865537 -180414017 - AluJb SINE Alu 0 312 1 24 0 0 0 chr6 8866974 8866998 -180412556 + AT_rich Low_complexity Low_complexity 1 24 0 270 0 0 0 chr6 8867801 8867831 -180411723 + (CA)n Simple_repeat Simple_repeat 2 31 0 201 219 0 0 chr6 8868156 8868197 -180411357 - L2 LINE L2 -1 3312 3272 280 381 60 16 chr6 8868349 8868598 -180410956 - L2 LINE L2 -243 3070 2811 555 293 55 30 chr6 8868794 8869122 -180410432 - L1ME4a LINE L1 -263 5858 5523 199 375 26 40 chr6 8871024 8871176 -180408378 + L2 LINE L2 2608 2757 -557 266 289 67 0 chr6 8871932 8872036 -180407518 - MIR SINE MIR -31 231 121 592 285 131 9 chr6 8873494 8873708 -180405846 - MIR SINE MIR -1 261 22 22 0 0 0 chr6 8875099 8875121 -180404433 + AT_rich Low_complexity Low_complexity 1 22 0 263 276 99 26 chr6 8875288 8875482 -180404072 - MIR SINE MIR -41 221 20 378 257 44 26 chr6 8876128 8876241 -180403313 + MIR SINE MIR 81 195 -67 500 308 114 17 chr6 8877344 8877782 -180401772 - LTR33 LTR ERVL -1 520 17 * 616 333 68 30 chr6 8877767 8878133 -180401421 - MLT1I LTR MaLR -28 381 2 2154 110 30 0 chr6 8878288 8878588 -180400966 - AluSx SINE Alu -3 309 1 676 308 164 28 chr6 8879393 8879789 -180399765 + LTR16C LTR ERVL 42 491 0 222 233 0 0 chr6 8880124 8880167 -180399387 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 2056 132 49 37 chr6 8880706 8881116 -180398438 + L1MA4 LINE L1 5886 6300 0 496 320 128 5 chr6 8881765 8881968 -180397586 - MLT1J1 LTR MaLR -4 442 215 1025 342 76 35 chr6 8881973 8882579 -180396975 + L2 LINE L2 2141 2771 -543 459 229 65 65 chr6 8882566 8882767 -180396787 + L2 LINE L2 3113 3313 0 * 243 0 0 0 chr6 8883523 8883550 -180396004 + (TG)n Simple_repeat Simple_repeat 1 27 0 408 238 144 50 chr6 8883553 8883713 -180395841 + MER91B DNA MER1_type 6 180 -10 180 111 0 0 chr6 8884671 8884698 -180394856 + (T)n Simple_repeat Simple_repeat 1 27 0 7900 11 1 0 chr6 8884718 8886327 -180393227 - L1PA2 LINE L1 0 6155 4546 427 276 82 102 chr6 8886428 8886553 -180393001 - L2 LINE L2 -34 3238 3112 2357 97 0 0 chr6 8886553 8886852 -180392702 - AluSx SINE Alu -13 299 1 427 276 82 102 chr6 8886852 8887030 -180392524 - L2 LINE L2 -160 3112 2941 32 0 0 0 chr6 8887049 8887081 -180392473 + AT_rich Low_complexity Low_complexity 1 32 0 2901 126 0 0 chr6 8887081 8887510 -180392044 - L1PA15 LINE L1 -10 6155 5727 2208 120 0 0 chr6 8887510 8887811 -180391743 - AluSc SINE Alu -8 301 1 211 346 95 35 chr6 8887907 8888222 -180391332 - L2 LINE L2 -452 2862 2529 386 325 90 5 chr6 8890464 8890652 -180388902 + MIR SINE MIR 21 224 -38 23 0 0 0 chr6 8890658 8890681 -180388873 + AT_rich Low_complexity Low_complexity 1 23 0 324 194 153 51 chr6 8891663 8891761 -180387793 - MIR3 SINE MIR -18 190 83 1627 74 12 19 chr6 8892280 8892536 -180387018 - MER11A LTR ERVK 0 1266 1013 687 151 7 20 chr6 8893019 8893171 -180386383 + CT-rich Low_complexity Low_complexity 2 151 0 1771 144 102 18 chr6 8893624 8893958 -180385596 - MLT1A1 LTR MaLR 0 365 4 1615 204 0 26 chr6 8893965 8894278 -180385276 - AluJo SINE Alu -7 305 1 391 148 23 0 chr6 8894571 8894659 -180384895 + CT-rich Low_complexity Low_complexity 3 92 0 231 173 0 0 chr6 8895185 8895237 -180384317 + C-rich Low_complexity Low_complexity 4 55 0 229 352 19 19 chr6 8895361 8895466 -180384088 - MIR3 SINE MIR -11 197 93 255 281 0 0 chr6 8895682 8895746 -180383808 + (CATA)n Simple_repeat Simple_repeat 4 67 0 180 77 0 0 chr6 8895988 8896014 -180383540 + (TA)n Simple_repeat Simple_repeat 2 27 0 237 65 0 0 chr6 8896058 8896089 -180383465 + (TG)n Simple_repeat Simple_repeat 2 32 0 2310 102 3 0 chr6 8897076 8897371 -180382183 - AluSp SINE Alu -17 296 1 21 0 0 0 chr6 8897591 8897612 -180381942 + AT_rich Low_complexity Low_complexity 1 21 0 276 30 0 0 chr6 8898094 8898127 -180381427 + (TG)n Simple_repeat Simple_repeat 1 33 0 525 236 156 31 chr6 8898503 8898728 -180380826 + MER112 DNA MER1_type 1 253 -7 1890 148 17 10 chr6 8899214 8899512 -180380042 - AluSx SINE Alu -12 300 1 22 70 0 0 chr6 8900699 8900742 -180378812 + AT_rich Low_complexity Low_complexity 1 43 0 1438 179 54 24 chr6 8901031 8901328 -180378226 - AluJo SINE Alu -6 306 1 406 269 40 120 chr6 8902047 8902396 -180377158 - MLT1K LTR MaLR -2 586 266 459 0 0 0 chr6 8902405 8902456 -180377098 + (TG)n Simple_repeat Simple_repeat 1 51 0 6725 60 19 2 chr6 8902458 8904164 -180375390 - L1PA7 LINE L1 -3 6151 4423 6899 100 2 5 chr6 8904165 8905201 -180374353 + L1P LINE L1 1490 2522 -3624 1294 268 38 38 chr6 8905326 8905886 -180373668 + MLT2F LTR ERVL 1 560 -103 1467 189 67 28 chr6 8905910 8906270 -180373284 - MLT1A2 LTR MaLR 0 374 1 379 276 110 24 chr6 8906559 8906686 -180372868 + L2 LINE L2 3125 3262 -10 200 328 30 0 chr6 8906987 8907054 -180372500 + L2 LINE L2 3198 3266 -6 2284 96 0 0 chr6 8908265 8908557 -180370997 - AluSg SINE Alu -18 292 1 1838 182 12 45 chr6 8908754 8909155 -180370399 + MLT1B LTR MaLR 3 390 0 1150 225 134 3 chr6 8910230 8910528 -180369026 + MER58B DNA MER1_type 1 337 -4 1505 54 0 0 chr6 8910808 8910993 -180368561 + L1PA4 LINE L1 5963 6147 -8 29 0 0 0 chr6 8910996 8911025 -180368529 + AT_rich Low_complexity Low_complexity 1 29 0 1922 94 128 0 chr6 8911904 8912170 -180367384 + AluSq SINE Alu 1 300 -13 1561 207 46 0 chr6 8912277 8912562 -180366992 + AluJo SINE Alu 1 298 -14 23 0 0 0 chr6 8912676 8912699 -180366855 + AT_rich Low_complexity Low_complexity 1 23 0 265 305 50 14 chr6 8913025 8913166 -180366388 + MLT1K LTR MaLR 335 480 -108 2487 186 215 21 chr6 8913349 8914070 -180365484 - pTR5 LTR ERV1 -226 2212 1352 984 273 79 69 chr6 8914393 8915197 -180364357 - L2 LINE L2 0 3313 2499 240 344 22 0 chr6 8915470 8915560 -180363994 + L2 LINE L2 3222 3313 0 180 219 158 12 chr6 8915588 8915670 -180363884 + MIR SINE MIR 97 190 -72 431 264 47 73 chr6 8916301 8916516 -180363038 - MIR SINE MIR 0 262 56 463 302 130 28 chr6 8917261 8917622 -180361932 - MLT1I LTR MaLR -9 400 3 878 184 32 16 chr6 8919736 8919921 -180359633 + MER3 DNA MER1_type 22 209 0 356 198 25 0 chr6 8921541 8921622 -180357932 + MER69 DNA AcHobo 1 83 -2443 279 275 58 0 chr6 8921744 8921864 -180357690 + MER69 DNA AcHobo 2393 2519 -7 247 258 70 39 chr6 8922058 8922186 -180357368 + MIR SINE MIR 18 149 -59 272 183 176 65 chr6 8922209 8922351 -180357203 + MER5A DNA MER1_type 4 183 -6 2071 140 24 34 chr6 8922630 8923009 -180356545 - THE1C LTR MaLR 0 375 1 1716 181 47 9 chr6 8923030 8923373 -180356181 + MLT1A1 LTR MaLR 10 365 0 1955 154 20 0 chr6 8923593 8923899 -180355655 + AluSx SINE Alu 1 312 0 840 262 173 22 chr6 8925656 8925848 -180353706 - MLT1G LTR MaLR -2 588 426 1917 134 17 76 chr6 8925848 8926205 -180353349 + MER1B DNA MER1_type 2 337 0 840 262 173 22 chr6 8926205 8926504 -180353050 - MLT1G LTR MaLR -164 426 23 2295 107 7 0 chr6 8927654 8927963 -180351591 + AluSq SINE Alu 1 311 -2 507 330 89 0 chr6 8928847 8929083 -180350471 + L2 LINE L2 2100 2356 -958 992 102 28 11 chr6 8929707 8929757 -180349797 + GA-rich Low_complexity Low_complexity 1 230 0 992 102 28 11 chr6 8929757 8929934 -180349620 + GA-rich Low_complexity Low_complexity 1 180 0 564 146 10 0 chr6 8930031 8930127 -180349427 - MLT1A2 LTR MaLR 0 374 278 522 329 61 4 chr6 8931438 8931669 -180347885 + MIR SINE MIR 11 254 -8 363 0 0 0 chr6 8932187 8932233 -180347321 - L1PA4 LINE L1 -175 5980 5935 1420 34 11 6 chr6 8932233 8932409 -180347145 + L1PA4 LINE L1 5975 6153 -2 21 0 0 0 chr6 8934012 8934033 -180345521 + AT_rich Low_complexity Low_complexity 1 21 0 2221 106 0 0 chr6 8934985 8935269 -180344285 + AluSx SINE Alu 1 284 -28 261 0 0 0 chr6 8935269 8935298 -180344256 + (TC)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr6 8936065 8936087 -180343467 + AT_rich Low_complexity Low_complexity 1 22 0 189 218 168 30 chr6 8936160 8936261 -180343293 - MIR SINE MIR -59 203 89 241 200 22 0 chr6 8936612 8936657 -180342897 + L3b LINE CR1 1422 1467 -116 21 0 0 0 chr6 8937097 8937118 -180342436 + AT_rich Low_complexity Low_complexity 1 21 0 395 321 49 5 chr6 8937315 8937539 -180342015 - HsTC2 DNA Tc2 -1026 872 639 446 195 144 8 chr6 8937985 8938103 -180341451 - MLT1D LTR MaLR -1 504 371 8574 104 35 0 chr6 8938106 8939363 -180340191 + L1PA7 LINE L1 1 1301 -5160 20279 90 8 6 chr6 8939371 8943772 -180335782 + L1PA7 LINE L1 2061 6467 -2 625 172 16 23 chr6 8943772 8943900 -180335654 - MLT1D LTR MaLR -119 386 260 3310 148 18 4 chr6 8943900 8944408 -180335146 - MER1A DNA MER1_type 0 529 15 321 250 0 65 chr6 8944550 8944642 -180334912 - MLT1D LTR MaLR -417 88 3 694 310 33 20 chr6 8944767 8944952 -180334602 + MER115 DNA AcHobo 390 582 -111 1850 161 24 18 chr6 8944952 8945293 -180334261 + MER2 DNA MER2_type 2 344 0 694 310 33 20 chr6 8945293 8945407 -180334147 + MER115 DNA AcHobo 582 693 0 193 233 23 0 chr6 8946021 8946064 -180333490 - L3 LINE CR1 -83 1494 1451 28 0 0 0 chr6 8947273 8947301 -180332253 + AT_rich Low_complexity Low_complexity 1 28 0 3878 166 13 11 chr6 8947750 8948462 -180331092 + L1MC1 LINE L1 5616 6328 -5 3668 75 20 2 chr6 8949719 8950222 -180329332 + L1PB1 LINE L1 5639 6150 -1 25 0 0 0 chr6 8950465 8950490 -180329064 + AT_rich Low_complexity Low_complexity 1 25 0 4506 161 19 20 chr6 8950490 8951337 -180328217 - L1MB1 LINE L1 -1 6167 5322 515 210 43 0 chr6 8951335 8951473 -180328081 + L1MB1 LINE L1 5185 5328 -818 * 522 119 40 23 chr6 8952540 8952717 -180326837 + (TA)n Simple_repeat Simple_repeat 1 180 0 207 0 0 0 chr6 8952735 8952758 -180326796 + (TG)n Simple_repeat Simple_repeat 2 24 0 207 88 0 0 chr6 8952770 8952804 -180326750 + (CA)n Simple_repeat Simple_repeat 2 35 0 357 295 80 20 chr6 8953767 8954101 -180325453 + HAL1b LINE L1 497 641 -776 362 213 0 0 chr6 8954186 8954247 -180325307 + FLAM_A SINE Alu 28 88 -45 263 31 0 0 chr6 8954284 8954316 -180325238 + (GA)n Simple_repeat Simple_repeat 2 33 0 313 115 16 16 chr6 8954317 8954378 -180325176 + (GAAAA)n Simple_repeat Simple_repeat 4 64 0 868 186 16 15 chr6 8954394 8954656 -180324898 + GA-rich Low_complexity Low_complexity 1 261 -326 1430 182 60 33 chr6 8954656 8954958 -180324596 + AluJo SINE Alu 1 310 -2 868 186 16 15 chr6 8954958 8954981 -180324573 + GA-rich Low_complexity Low_complexity 261 587 0 231 114 0 0 chr6 8955017 8955052 -180324502 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 3540 227 58 13 chr6 8955134 8956113 -180323441 + L1PB2 LINE L1 6 1028 -5835 729 235 0 29 chr6 8956100 8956304 -180323250 - L1PBa LINE L1 -5258 1605 1408 * 14224 181 15 46 chr6 8956300 8961024 -180318530 + L1PB2 LINE L1 1793 6404 -463 270 56 0 0 chr6 8961024 8961060 -180318494 + (TG)n Simple_repeat Simple_repeat 2 37 0 14224 181 15 46 chr6 8961060 8961511 -180318043 + L1PB2 LINE L1 6404 6867 0 24 0 0 0 chr6 8961545 8961569 -180317985 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr6 8961717 8961747 -180317807 + AT_rich Low_complexity Low_complexity 1 30 0 619 280 108 91 chr6 8962086 8962926 -180316628 + L1M4 LINE L1 2325 3179 -2967 1552 126 31 126 chr6 8963296 8963621 -180315933 - AluJb SINE Alu -7 295 2 6218 138 15 17 chr6 8963885 8965964 -180313590 - L1MA4 LINE L1 -5 6295 4220 208 128 64 43 chr6 8966213 8966260 -180313294 - MIR3 SINE MIR -17 191 144 220 77 96 0 chr6 8967310 8967362 -180312192 + (TA)n Simple_repeat Simple_repeat 2 58 0 296 130 14 0 chr6 8967425 8967494 -180312060 + (TA)n Simple_repeat Simple_repeat 2 71 0 393 58 0 0 chr6 8967879 8967931 -180311623 + (TG)n Simple_repeat Simple_repeat 2 53 0 501 308 27 7 chr6 8968965 8969111 -180310443 - MIR3 SINE MIR -4 204 56 22 0 0 0 chr6 8969259 8969281 -180310273 + AT_rich Low_complexity Low_complexity 1 22 0 15468 104 8 3 chr6 8970081 8972356 -180307198 - L1P LINE L1 -2371 3775 1490 6696 61 21 5 chr6 8972357 8974063 -180305491 + L1PA7 LINE L1 4423 6151 -3 378 0 0 0 chr6 8974065 8974107 -180305447 + (CA)n Simple_repeat Simple_repeat 1 42 0 493 269 40 120 chr6 8974117 8974466 -180305088 + MLT1K LTR MaLR 266 586 -2 1421 182 54 24 chr6 8975185 8975482 -180304072 + AluJb SINE Alu 1 306 -6 22 70 0 0 chr6 8975771 8975814 -180303740 + AT_rich Low_complexity Low_complexity 1 43 0 1875 144 17 10 chr6 8977001 8977299 -180302255 + AluSx SINE Alu 1 300 -12 604 236 156 31 chr6 8977785 8978010 -180301544 - MER112 DNA MER1_type -7 253 1 420 20 0 0 chr6 8978386 8978435 -180301119 + (CA)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr6 8978918 8978939 -180300615 + AT_rich Low_complexity Low_complexity 1 21 0 2312 98 3 0 chr6 8979159 8979455 -180300099 + AluSp SINE Alu 1 297 -16 237 65 0 0 chr6 8980441 8980472 -180299082 + (CA)n Simple_repeat Simple_repeat 2 32 0 198 71 0 0 chr6 8980516 8980544 -180299010 + (TA)n Simple_repeat Simple_repeat 2 29 0 255 281 0 0 chr6 8980786 8980850 -180298704 + (TATG)n Simple_repeat Simple_repeat 4 67 0 233 352 19 19 chr6 8981066 8981171 -180298383 + MIR3 SINE MIR 93 197 -11 231 173 0 0 chr6 8981295 8981347 -180298207 + G-rich Low_complexity Low_complexity 4 55 0 370 159 23 0 chr6 8981874 8981962 -180297592 + GA-rich Low_complexity Low_complexity 3 92 0 1578 209 0 17 chr6 8982255 8982557 -180296997 + AluJo SINE Alu 1 297 -15 1784 141 102 18 chr6 8982575 8982909 -180296645 + MLT1A1 LTR MaLR 4 365 0 666 158 7 20 chr6 8983362 8983514 -180296040 + GA-rich Low_complexity Low_complexity 2 151 0 1733 70 12 19 chr6 8983997 8984253 -180295301 + MER11A LTR ERVK 1013 1266 0 310 204 153 51 chr6 8984772 8984870 -180294684 + MIR3 SINE MIR 83 190 -18 23 0 0 0 chr6 8985854 8985877 -180293677 + AT_rich Low_complexity Low_complexity 1 23 0 374 325 90 5 chr6 8985883 8986071 -180293483 - MIR SINE MIR -38 224 21 199 349 95 35 chr6 8988313 8988628 -180290926 + L2 LINE L2 2529 2862 -452 2203 120 0 0 chr6 8988724 8989025 -180290529 + AluSc SINE Alu 1 301 -8 2901 126 0 0 chr6 8989025 8989454 -180290100 + L1PA15 LINE L1 5727 6155 -10 32 0 0 0 chr6 8989454 8989486 -180290068 + AT_rich Low_complexity Low_complexity 1 32 0 427 276 82 102 chr6 8989505 8989683 -180289871 + L2 LINE L2 2941 3112 -160 2357 97 0 0 chr6 8989683 8989982 -180289572 + AluSx SINE Alu 1 299 -13 427 276 82 102 chr6 8989982 8990107 -180289447 + L2 LINE L2 3112 3238 -34 7922 12 0 0 chr6 8990208 8991818 -180287736 + L1PA2 LINE L1 4546 6155 0 7927 12 0 0 chr6 8990916 8991818 -180287736 + L1PA2 LINE L1 5254 6204 0 207 265 0 0 chr6 8991818 8991867 -180287687 + A-rich Low_complexity Low_complexity 1 180 0 408 238 144 50 chr6 8992825 8992985 -180286569 - MER91B DNA MER1_type -10 180 6 261 0 0 0 chr6 8992988 8993017 -180286537 + (CA)n Simple_repeat Simple_repeat 1 29 0 459 229 65 65 chr6 8993773 8993974 -180285580 - L2 LINE L2 0 3313 3113 * 1078 339 81 33 chr6 8993961 8994569 -180284985 - L2 LINE L2 -543 2771 2135 482 325 128 5 chr6 8994575 8994778 -180284776 + MLT1J1 LTR MaLR 215 442 -4 2025 134 49 37 chr6 8995427 8995837 -180283717 - L1MA4 LINE L1 0 6300 5886 222 233 0 0 chr6 8996373 8996416 -180283138 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 664 310 161 28 chr6 8996751 8997148 -180282406 - LTR16C LTR ERVL 0 491 42 2176 109 30 0 chr6 8997954 8998257 -180281297 + AluSx SINE Alu 1 312 0 616 333 68 30 chr6 8998412 8998778 -180280776 + MLT1I LTR MaLR 2 381 -28 500 305 114 17 chr6 8998763 8999201 -180280353 + LTR33 LTR ERVL 17 520 -1 * 378 257 44 26 chr6 9000304 9000417 -180279137 - MIR SINE MIR -67 195 81 274 268 99 26 chr6 9001063 9001257 -180278297 + MIR SINE MIR 20 221 -41 22 0 0 0 chr6 9001424 9001446 -180278108 + AT_rich Low_complexity Low_complexity 1 22 0 592 285 131 9 chr6 9002837 9003051 -180276503 + MIR SINE MIR 22 261 -1 257 289 67 0 chr6 9004510 9004614 -180274940 + MIR SINE MIR 121 231 -31 210 368 26 40 chr6 9005370 9005522 -180274032 - L2 LINE L2 -557 2757 2608 569 302 52 27 chr6 9007424 9007752 -180271802 + L1ME4a LINE L1 5523 5858 -263 286 381 60 16 chr6 9007948 9008197 -180271357 + L2 LINE L2 2811 3070 -243 201 219 0 0 chr6 9008349 9008390 -180271164 + L2 LINE L2 3272 3312 -1 306 0 0 0 chr6 9008715 9008749 -180270805 + (TG)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr6 9009554 9009578 -180269976 + AT_rich Low_complexity Low_complexity 1 24 0 2046 127 0 31 chr6 9011016 9011338 -180268216 + AluJb SINE Alu 1 312 0 36 40 0 0 chr6 9011922 9011972 -180267582 + AT_rich Low_complexity Low_complexity 1 50 0 2097 114 0 0 chr6 9012047 9012336 -180267218 - AluSg SINE Alu -1 309 21 268 298 35 94 chr6 9012382 9012553 -180267001 - L2 LINE L2 -159 3113 2953 4387 184 25 31 chr6 9014870 9015716 -180263838 + MER21B LTR ERV1 1 841 -22 25 0 0 0 chr6 9015850 9015875 -180263679 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr6 9016091 9016134 -180263420 + AT_rich Low_complexity Low_complexity 1 43 0 1600 237 26 40 chr6 9016227 9016338 -180263216 - L1ME LINE L1 -392 6569 6458 207 69 0 0 chr6 9016338 9016367 -180263187 + (TG)n Simple_repeat Simple_repeat 2 30 0 1600 237 26 40 chr6 9016367 9017093 -180262461 - L1ME LINE L1 -503 6458 5750 630 234 100 65 chr6 9017120 9017667 -180261887 - L1MCc LINE L1 -4887 1536 1291 858 301 121 16 chr6 9017692 9018130 -180261424 - L1MCc LINE L1 -5200 1223 740 1015 223 26 108 chr6 9019357 9019566 -180259988 + L1ME2 LINE L1 5773 5933 -231 2627 36 3 0 chr6 9019566 9019867 -180259687 - AluY SINE Alu -9 302 1 1015 223 26 108 chr6 9019867 9020075 -180259479 + L1ME2 LINE L1 5933 6156 -8 467 263 78 43 chr6 9020091 9020203 -180259351 + L1MEd LINE L1 949 1056 -5063 1847 159 0 26 chr6 9020203 9020512 -180259042 + AluJo SINE Alu 1 301 -11 467 263 78 43 chr6 9020512 9020680 -180258874 + L1MEd LINE L1 1056 1239 -4880 1994 142 3 7 chr6 9021100 9021396 -180258158 + AluSx SINE Alu 3 297 -15 546 314 50 0 chr6 9021542 9021701 -180257853 + MIR SINE MIR 23 189 -73 259 325 60 0 chr6 9021854 9021971 -180257583 + MIR SINE MIR 74 197 -65 720 307 141 14 chr6 9021985 9022458 -180257096 + L2 LINE L2 2768 3309 -4 451 317 116 9 chr6 9023210 9023434 -180256120 + MIR SINE MIR 8 255 -7 353 309 142 6 chr6 9023897 9024059 -180255495 - MLT1J2 LTR MaLR -143 307 124 215 286 39 39 chr6 9024203 9024280 -180255274 - MIR SINE MIR -184 78 2 2429 151 47 7 chr6 9024892 9025317 -180254237 - Tigger1 DNA MER2_type 0 2418 1977 * 8787 128 21 9 chr6 9025314 9026685 -180252869 - Tigger1 DNA MER2_type -1001 1417 31 369 131 0 0 chr6 9027131 9027192 -180252362 + (CA)n Simple_repeat Simple_repeat 1 61 0 696 273 98 35 chr6 9030688 9030974 -180248580 + L2 LINE L2 3006 3309 -4 261 317 58 29 chr6 9030981 9031085 -180248469 + MIR3 SINE MIR 66 172 -36 1038 234 140 88 chr6 9031311 9032039 -180247515 + LTR41 LTR ERVL 1 766 -7 22 0 0 0 chr6 9032178 9032200 -180247354 + AT_rich Low_complexity Low_complexity 1 22 0 265 311 78 11 chr6 9033283 9033373 -180246181 - MIR3 SINE MIR -50 158 63 838 271 197 14 chr6 9033426 9033858 -180245696 + MLT1J LTR MaLR 1 511 0 247 268 24 24 chr6 9033952 9034051 -180245503 + MER5A DNA MER1_type 4 102 -87 22 0 0 0 chr6 9034808 9034830 -180244724 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr6 9034985 9035019 -180244535 + AT_rich Low_complexity Low_complexity 1 34 0 5879 91 11 0 chr6 9035019 9036454 -180243100 - L1PA8A LINE L1 -3 6128 4690 3563 116 227 0 chr6 9036455 9037156 -180242398 - L1PA8A LINE L1 -1545 4601 3742 2320 225 105 43 chr6 9037289 9037430 -180242124 - L1ME1 LINE L1 -5 6144 6013 2203 86 0 7 chr6 9037430 9037738 -180241816 - AluSc SINE Alu 0 306 1 2320 225 105 43 chr6 9037738 9038961 -180240593 - L1ME1 LINE L1 -136 6013 4686 1251 257 60 12 chr6 9038966 9039382 -180240172 - L1ME1 LINE L1 -1938 4191 3756 464 272 71 42 chr6 9039959 9040129 -180239425 - L1ME1 LINE L1 -4880 1239 1056 1796 163 0 26 chr6 9040129 9040435 -180239119 - AluJo SINE Alu -14 298 1 464 272 71 42 chr6 9040435 9040547 -180239007 - L1ME1 LINE L1 -5063 1056 949 1022 223 26 108 chr6 9040563 9040771 -180238783 - L1ME2 LINE L1 -8 6156 5997 2448 38 34 0 chr6 9040771 9041062 -180238492 + AluY SINE Alu 1 301 -10 1022 223 26 108 chr6 9041062 9041271 -180238283 - L1ME2 LINE L1 -167 5997 5773 901 301 121 16 chr6 9042498 9042936 -180236618 + L1ME LINE L1 740 1223 -5200 616 231 102 68 chr6 9042961 9043508 -180236046 + L1ME LINE L1 1291 1833 -4887 1566 238 27 40 chr6 9043535 9044260 -180235294 + L1ME LINE L1 5750 6458 -503 207 69 0 0 chr6 9044260 9044289 -180235265 + (CA)n Simple_repeat Simple_repeat 2 30 0 1566 238 27 40 chr6 9044289 9044400 -180235154 + L1ME LINE L1 6458 6569 -392 22 70 0 0 chr6 9044493 9044536 -180235018 + AT_rich Low_complexity Low_complexity 1 43 0 576 200 90 0 chr6 9044639 9044784 -180234770 + L1MB1 LINE L1 4775 4932 -1214 2606 45 0 3 chr6 9044824 9045132 -180234422 - AluY SINE Alu -4 307 1 2368 225 34 17 chr6 9045162 9045806 -180233748 - L1MB1 LINE L1 -783 5363 4709 * 4121 150 53 8 chr6 9045804 9046570 -180232984 + L1MB1 LINE L1 5355 6155 -13 213 39 0 0 chr6 9046573 9046599 -180232955 + (TAA)n Simple_repeat Simple_repeat 2 27 0 706 263 202 20 chr6 9046601 9046898 -180232656 - L2 LINE L2 -1625 1689 1339 433 285 73 0 chr6 9046956 9047079 -180232475 - MER58B DNA MER1_type 0 341 210 283 314 0 0 chr6 9047266 9047336 -180232218 - MER63 DNA MER1_type -7 1053 984 278 229 43 0 chr6 9047358 9047428 -180232126 - MER63 DNA MER1_type -123 713 15 480 250 86 0 chr6 9047905 9048033 -180231521 + MIR SINE MIR 86 224 -38 915 328 65 21 chr6 9048061 9048723 -180230831 + L2 LINE L2 2629 3313 0 2289 109 0 3 chr6 9048997 9049310 -180230244 - AluSx SINE Alu 0 312 1 206 250 0 17 chr6 9049833 9049893 -180229661 + T-rich Low_complexity Low_complexity 4 62 0 26 0 0 0 chr6 9050278 9050304 -180229250 + AT_rich Low_complexity Low_complexity 1 26 0 630 222 0 0 chr6 9051250 9051358 -180228196 + Tigger3(Golem) DNA MER2_type 1 108 -2921 432 0 0 0 chr6 9051358 9051406 -180228148 + (T)n Simple_repeat Simple_repeat 1 48 0 1951 83 8 0 chr6 9051460 9051726 -180227828 - L1PA8 LINE L1 0 6172 5905 4158 140 28 29 chr6 9051731 9052481 -180227073 + Tigger3(Golem) DNA MER2_type 2281 3029 0 375 266 0 62 chr6 9052483 9052611 -180226943 + L2 LINE L2 3180 3299 -14 295 287 59 30 chr6 9052715 9052816 -180226738 - L2 LINE L2 0 3313 3210 401 222 127 16 chr6 9052862 9052988 -180226566 + MER5A DNA MER1_type 43 182 -7 270 0 0 0 chr6 9053578 9053608 -180225946 + (CA)n Simple_repeat Simple_repeat 2 31 0 566 157 62 105 chr6 9054258 9054468 -180225086 - L1MA9 LINE L1 -1 6311 6111 344 237 49 105 chr6 9054480 9054653 -180224901 - MIR SINE MIR -62 146 32 317 273 20 40 chr6 9056368 9056467 -180223087 + MIR SINE MIR 82 178 -84 2134 90 0 0 chr6 9057009 9057276 -180222278 + AluSx SINE Alu 1 267 -45 212 158 0 0 chr6 9057461 9057499 -180222055 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 422 267 136 11 chr6 9057522 9057698 -180221856 + MIR SINE MIR 46 243 -19 285 245 59 29 chr6 9057741 9057843 -180221711 - MIR3 SINE MIR -3 205 101 1467 189 172 56 chr6 9057860 9057899 -180221655 - MLT2B1 LTR ERVL 0 520 487 279 114 0 0 chr6 9057899 9057943 -180221611 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1467 189 172 56 chr6 9057943 9058369 -180221185 - MLT2B1 LTR ERVL -33 487 1 1839 156 3 0 chr6 9058554 9058871 -180220683 - AluJb SINE Alu 0 318 1 40 49 0 0 chr6 9060142 9060203 -180219351 + AT_rich Low_complexity Low_complexity 1 61 0 372 175 0 151 chr6 9060953 9061079 -180218475 + L2 LINE L2 3206 3312 -1 573 356 103 20 chr6 9061124 9061514 -180218040 + L3 LINE CR1 1056 1477 -100 246 326 93 29 chr6 9063121 9063293 -180216261 + MIR3 SINE MIR 8 190 -18 490 303 87 15 chr6 9064539 9064734 -180214820 + MIR SINE MIR 21 229 -33 264 59 0 0 chr6 9065328 9065362 -180214192 + (TCC)n Simple_repeat Simple_repeat 1 34 0 2202 78 13 29 chr6 9065362 9065671 -180213883 - AluSg SINE Alu -6 304 1 207 286 195 0 chr6 9065702 9065779 -180213775 + MIR SINE MIR 56 147 -115 21 0 0 0 chr6 9066475 9066496 -180213058 + AT_rich Low_complexity Low_complexity 1 21 0 276 154 0 15 chr6 9066527 9066592 -180212962 - L1PB1 LINE L1 0 6151 6088 285 197 0 0 chr6 9067052 9067128 -180212426 + C-rich Low_complexity Low_complexity 1 76 0 522 119 40 23 chr6 9067268 9067445 -180212109 + (TA)n Simple_repeat Simple_repeat 1 180 0 515 210 43 0 chr6 9068512 9068650 -180210904 - L1MB1 LINE L1 -818 5328 5185 * 4506 161 19 20 chr6 9068648 9069495 -180210059 + L1MB1 LINE L1 5322 6167 -1 25 0 0 0 chr6 9069495 9069520 -180210034 + AT_rich Low_complexity Low_complexity 1 25 0 3683 74 20 2 chr6 9069763 9070266 -180209288 - L1PB1 LINE L1 -1 6150 5639 3878 166 13 11 chr6 9071523 9072235 -180207319 - L1MC1 LINE L1 -5 6328 5616 28 0 0 0 chr6 9072684 9072712 -180206842 + AT_rich Low_complexity Low_complexity 1 28 0 193 233 23 0 chr6 9073921 9073964 -180205590 + L3 LINE CR1 1451 1494 -83 694 310 33 20 chr6 9074578 9074692 -180204862 - MER115 DNA AcHobo 0 693 582 1850 161 24 18 chr6 9074692 9075033 -180204521 - MER2 DNA MER2_type 0 344 2 694 310 33 20 chr6 9075033 9075218 -180204336 - MER115 DNA AcHobo -111 582 390 321 250 0 65 chr6 9075343 9075435 -180204119 + MLT1D LTR MaLR 3 88 -417 3310 148 18 4 chr6 9075577 9076085 -180203469 + MER1A DNA MER1_type 15 529 0 625 172 16 23 chr6 9076085 9076213 -180203341 + MLT1D LTR MaLR 260 386 -119 25080 90 8 6 chr6 9076213 9080614 -180198940 - L1PA7 LINE L1 -2 6467 2061 9058 104 35 0 chr6 9080622 9081879 -180197675 - L1PA7 LINE L1 -5160 1301 1 484 195 144 8 chr6 9081882 9082000 -180197554 + MLT1D LTR MaLR 371 504 -1 225 158 0 0 chr6 9082264 9082302 -180197252 + HsTC2 DNA Tc2 231 268 -1630 457 321 49 5 chr6 9082446 9082670 -180196884 + HsTC2 DNA Tc2 639 872 -1026 21 0 0 0 chr6 9082867 9082888 -180196666 + AT_rich Low_complexity Low_complexity 1 21 0 241 200 22 0 chr6 9083328 9083373 -180196181 - L3b LINE CR1 -116 1467 1422 189 218 168 30 chr6 9083724 9083825 -180195729 + MIR SINE MIR 89 203 -59 22 0 0 0 chr6 9083898 9083920 -180195634 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr6 9084685 9084714 -180194840 + (GA)n Simple_repeat Simple_repeat 2 30 0 2212 106 0 0 chr6 9084714 9084998 -180194556 - AluSx SINE Alu -28 284 1 21 0 0 0 chr6 9085950 9085971 -180193583 + AT_rich Low_complexity Low_complexity 1 21 0 1414 34 11 6 chr6 9087574 9087752 -180191802 - L1PA4 LINE L1 -2 6153 5975 351 0 0 0 chr6 9087752 9087796 -180191758 + L1PA4 LINE L1 5937 5980 -175 519 329 61 4 chr6 9088314 9088545 -180191009 - MIR SINE MIR -8 254 11 596 146 10 0 chr6 9089856 9089952 -180189602 + MLT1A2 LTR MaLR 278 374 0 965 103 29 11 chr6 9090002 9090049 -180189505 + CT-rich Low_complexity Low_complexity 1 224 0 965 103 29 11 chr6 9090049 9090223 -180189331 + CT-rich Low_complexity Low_complexity 4 180 0 513 330 89 0 chr6 9090896 9091132 -180188422 - L2 LINE L2 -958 2356 2100 2275 107 7 0 chr6 9092016 9092325 -180187229 - AluSq SINE Alu -2 311 1 840 262 173 22 chr6 9093475 9093774 -180185780 + MLT1G LTR MaLR 23 276 -314 1917 134 17 76 chr6 9093774 9094131 -180185423 - MER1B DNA MER1_type 0 337 2 840 262 173 22 chr6 9094131 9094323 -180185231 + MLT1G LTR MaLR 276 588 -2 1955 154 20 0 chr6 9096080 9096386 -180183168 - AluSx SINE Alu 0 312 1 1716 181 47 9 chr6 9096606 9096949 -180182605 - MLT1A1 LTR MaLR 0 365 10 2071 140 24 34 chr6 9096970 9097349 -180182205 + THE1C LTR MaLR 1 375 0 272 183 176 65 chr6 9097628 9097770 -180181784 - MER5A DNA MER1_type -6 183 4 247 258 70 39 chr6 9097793 9097921 -180181633 - MIR SINE MIR -59 149 18 279 275 58 0 chr6 9098115 9098235 -180181319 - MER69 DNA AcHobo -7 2519 2393 356 198 25 0 chr6 9098357 9098438 -180181116 - MER69 DNA AcHobo -2443 83 1 878 184 32 16 chr6 9100058 9100243 -180179311 - MER3 DNA MER1_type 0 209 22 463 302 130 28 chr6 9102357 9102718 -180176836 + MLT1I LTR MaLR 3 400 -9 431 264 47 73 chr6 9103463 9103678 -180175876 + MIR SINE MIR 56 262 0 180 219 158 12 chr6 9104309 9104391 -180175163 - MIR SINE MIR -72 190 97 240 344 22 0 chr6 9104419 9104509 -180175045 - L2 LINE L2 0 3313 3222 984 273 79 69 chr6 9104782 9105586 -180173968 + L2 LINE L2 2499 3313 0 2487 186 215 21 chr6 9105909 9106630 -180172924 + pTR5 LTR ERV1 1352 2212 -226 265 305 50 14 chr6 9106813 9106954 -180172600 - MLT1K LTR MaLR -108 480 335 23 0 0 0 chr6 9107280 9107303 -180172251 + AT_rich Low_complexity Low_complexity 1 23 0 1561 207 46 0 chr6 9107417 9107702 -180171852 - AluJo SINE Alu -14 298 1 1887 94 127 4 chr6 9107809 9108076 -180171478 - AluSq SINE Alu -13 300 1 29 0 0 0 chr6 9108955 9108984 -180170570 + AT_rich Low_complexity Low_complexity 1 29 0 1505 54 0 0 chr6 9108987 9109172 -180170382 - L1PA4 LINE L1 -8 6147 5963 1169 221 134 3 chr6 9109452 9109750 -180169804 - MER58B DNA MER1_type -4 337 1 1838 182 12 45 chr6 9110825 9111226 -180168328 - MLT1B LTR MaLR 0 390 3 2284 96 0 0 chr6 9111423 9111715 -180167839 + AluSg SINE Alu 1 292 -18 200 328 30 0 chr6 9112926 9112993 -180166561 - L2 LINE L2 -6 3266 3198 379 276 110 24 chr6 9113294 9113421 -180166133 - L2 LINE L2 -10 3262 3125 1467 189 67 28 chr6 9113710 9114070 -180165484 + MLT1A2 LTR MaLR 1 374 0 1294 268 38 38 chr6 9114094 9114654 -180164900 - MLT2F LTR ERVL -103 560 1 204 163 0 23 chr6 9115406 9115449 -180164105 + A-rich Low_complexity Low_complexity 2 43 0 276 30 0 0 chr6 9115826 9115859 -180163695 + (A)n Simple_repeat Simple_repeat 1 33 0 377 361 95 23 chr6 9116764 9117110 -180162444 + L2 LINE L2 2273 2643 -671 2587 168 40 7 chr6 9117636 9118183 -180161371 - L1MA8 LINE L1 -2 6289 5725 1351 164 79 54 chr6 9120894 9121248 -180158306 + MLT1A1 LTR MaLR 3 365 0 310 291 26 80 chr6 9121739 9121890 -180157664 - MIR SINE MIR -74 188 46 189 0 0 0 chr6 9124876 9124897 -180154657 + (T)n Simple_repeat Simple_repeat 1 21 0 247 362 0 0 chr6 9125414 9125483 -180154071 - L2 LINE L2 -4 3268 3200 826 213 4 43 chr6 9127144 9127374 -180152180 + pTR5 LTR ERV1 743 963 -1475 * 1252 139 30 11 chr6 9127347 9127614 -180151940 - pTR5 LTR ERV1 -1093 1345 1074 3781 115 132 127 chr6 9127796 9129261 -180150293 + pTR5 LTR ERV1 1088 2438 0 180 292 21 0 chr6 9130483 9130531 -180149023 - MIR SINE MIR -10 252 204 2283 225 105 8 chr6 9130844 9131659 -180147895 + L1ME2 LINE L1 5236 6148 -18 252 293 24 42 chr6 9131681 9131893 -180147661 + L1MC4 LINE L1 7834 8041 -1 302 280 13 0 chr6 9132660 9132735 -180146819 - MIR3 SINE MIR -17 191 116 519 154 49 0 chr6 9133421 9133544 -180146010 - L1MA10 LINE L1 -2 6332 6204 387 41 0 0 chr6 9134497 9134546 -180145008 + (TG)n Simple_repeat Simple_repeat 1 49 0 361 321 67 12 chr6 9135142 9135307 -180144247 + MIR SINE MIR 70 243 -19 231 244 105 118 chr6 9135408 9135646 -180143908 + L2 LINE L2 3015 3249 -64 198 118 0 0 chr6 9137747 9137781 -180141773 + (TG)n Simple_repeat Simple_repeat 1 34 0 437 128 0 0 chr6 9139561 9139639 -180139915 - L1MA9 LINE L1 -2 6310 6233 1943 138 32 37 chr6 9139750 9140127 -180139427 - THE1C LTR MaLR 0 375 1 2326 101 7 7 chr6 9140499 9140807 -180138747 + AluSg SINE Alu 1 308 -2 308 321 12 0 chr6 9140935 9141016 -180138538 + L2 LINE L2 3154 3235 -37 699 193 17 45 chr6 9141494 9141689 -180137865 + MLT1A2 LTR MaLR 6 205 -214 23 0 0 0 chr6 9141718 9141741 -180137813 + AT_rich Low_complexity Low_complexity 1 23 0 622 236 21 0 chr6 9141783 9141923 -180137631 + MLT1A2 LTR MaLR 190 332 -58 814 311 49 44 chr6 9142359 9142790 -180136764 + MER115 DNA AcHobo 2 434 -259 2626 51 0 0 chr6 9142797 9143108 -180136446 + AluY SINE Alu 1 311 0 220 330 80 0 chr6 9143208 9143296 -180136258 + MIR SINE MIR 46 140 -122 24 0 0 0 chr6 9144194 9144218 -180135336 + AT_rich Low_complexity Low_complexity 1 24 0 1305 200 3 7 chr6 9144498 9144718 -180134836 - L1MB3 LINE L1 -2 6181 5961 1973 117 27 20 chr6 9144718 9144889 -180134665 - AluSx SINE Alu -11 301 126 269 26 26 0 chr6 9144889 9144927 -180134627 + (TG)n Simple_repeat Simple_repeat 2 40 0 1973 117 27 20 chr6 9144927 9145054 -180134500 - AluSx SINE Alu -186 126 1 1305 200 3 7 chr6 9145054 9145123 -180134431 - L1MB3 LINE L1 -222 5961 5893 720 180 0 7 chr6 9145127 9145266 -180134288 - L1MB3 LINE L1 -719 5461 5324 912 250 94 3 chr6 9145266 9145650 -180133904 + MER114 LTR ERV 178 596 -52 1861 90 105 18 chr6 9146171 9146448 -180133106 + AluSq SINE Alu 1 301 -12 2028 121 0 0 chr6 9146812 9147094 -180132460 + AluSx SINE Alu 15 296 -16 195 42 0 0 chr6 9147606 9147630 -180131924 + (CA)n Simple_repeat Simple_repeat 2 25 0 629 368 68 29 chr6 9148126 9148507 -180131047 - L2 LINE L2 -5 3267 2872 957 365 37 23 chr6 9148574 9149351 -180130203 - L2 LINE L2 -514 2800 2013 187 411 18 0 chr6 9149627 9149683 -180129871 - L2 LINE L2 -87 3185 3129 360 0 0 0 chr6 9150013 9150053 -180129501 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 411 286 97 35 chr6 9150053 9150280 -180129274 - L2 LINE L2 -20 3293 3053 539 250 170 9 chr6 9150350 9150574 -180128980 + LTR16C LTR ERVL 232 491 0 1443 257 31 53 chr6 9150932 9151418 -180128136 - LTR53 LTR ERVL -9 510 36 2220 127 0 0 chr6 9153466 9153774 -180125780 + AluSg SINE Alu 1 308 -2 24 32 0 0 chr6 9154468 9154499 -180125055 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 9154521 9154551 -180125003 + AT_rich Low_complexity Low_complexity 1 30 0 4984 220 58 41 chr6 9156471 9159211 -180120343 - L1MD1 LINE L1 0 6242 3451 1508 142 4 37 chr6 9159272 9159518 -180120036 - MER1B DNA MER1_type -1 338 101 1875 138 95 14 chr6 9159518 9159865 -180119689 + THE1C LTR MaLR 1 375 0 9642 117 53 11 chr6 9159865 9161381 -180118173 + THE1C-int LTR MaLR 1 1580 0 475 111 12 49 chr6 9161381 9161462 -180118092 + THE1C LTR MaLR 1 78 -297 22 35 0 0 chr6 9163756 9163785 -180115769 + AT_rich Low_complexity Low_complexity 1 29 0 558 264 171 39 chr6 9164233 9164315 -180115239 - L2 LINE L2 -1267 2047 1977 1790 208 8 24 chr6 9164315 9164686 -180114868 - MLT1A1 LTR MaLR 0 365 1 558 264 171 39 chr6 9164686 9164861 -180114693 - L2 LINE L2 -1337 1977 1756 2430 93 0 0 chr6 9164864 9165165 -180114389 + AluSg SINE Alu 1 301 -9 732 198 76 0 chr6 9165172 9165344 -180114210 + L1 LINE L1 4748 4932 -1214 1095 64 7 0 chr6 9165384 9165525 -180114029 - AluY SINE Alu -4 307 166 377 361 95 23 chr6 9216311 9216657 -180062897 + L2 LINE L2 2273 2643 -671 2587 168 40 7 chr6 9217183 9217730 -180061824 - L1MA8 LINE L1 -2 6289 5725 1351 164 79 54 chr6 9220441 9220795 -180058759 + MLT1A1 LTR MaLR 3 365 0 310 291 26 80 chr6 9221286 9221437 -180058117 - MIR SINE MIR -74 188 46 207 0 0 0 chr6 9224423 9224446 -180055108 + (T)n Simple_repeat Simple_repeat 1 23 0 247 362 0 0 chr6 9224963 9225032 -180054522 - L2 LINE L2 -4 3268 3200 830 209 4 43 chr6 9226693 9226923 -180052631 + pTR5 LTR ERV1 743 963 -1475 * 1255 135 30 11 chr6 9226896 9227163 -180052391 - pTR5 LTR ERV1 -1093 1345 1074 * 4474 119 122 120 chr6 9227148 9228772 -180050782 + pTR5 LTR ERV1 936 2438 0 180 292 21 0 chr6 9229994 9230042 -180049512 - MIR SINE MIR -10 252 204 198 118 0 0 chr6 9231036 9231070 -180048484 + (TG)n Simple_repeat Simple_repeat 1 34 0 437 128 0 0 chr6 9232850 9232928 -180046626 - L1MA9 LINE L1 -2 6310 6233 1943 138 32 37 chr6 9233039 9233416 -180046138 - THE1C LTR MaLR 0 375 1 2326 101 7 7 chr6 9233788 9234096 -180045458 + AluSg SINE Alu 1 308 -2 308 321 12 0 chr6 9234224 9234305 -180045249 + L2 LINE L2 3154 3235 -37 699 193 17 45 chr6 9234783 9234978 -180044576 + MLT1A2 LTR MaLR 6 205 -214 23 0 0 0 chr6 9235007 9235030 -180044524 + AT_rich Low_complexity Low_complexity 1 23 0 622 236 21 0 chr6 9235072 9235212 -180044342 + MLT1A2 LTR MaLR 190 332 -58 814 311 49 44 chr6 9235648 9236079 -180043475 + MER115 DNA AcHobo 2 434 -259 2621 51 0 0 chr6 9236086 9236397 -180043157 + AluY SINE Alu 1 311 0 220 330 80 0 chr6 9236497 9236585 -180042969 + MIR SINE MIR 46 140 -122 24 0 0 0 chr6 9237483 9237507 -180042047 + AT_rich Low_complexity Low_complexity 1 24 0 1290 200 3 7 chr6 9237787 9238007 -180041547 - L1MB3 LINE L1 -2 6181 5961 1990 117 27 20 chr6 9238007 9238178 -180041376 - AluSx SINE Alu -11 301 126 269 26 26 0 chr6 9238178 9238216 -180041338 + (TG)n Simple_repeat Simple_repeat 2 40 0 1990 117 27 20 chr6 9238216 9238343 -180041211 - AluSx SINE Alu -186 126 1 1290 200 3 7 chr6 9238343 9238412 -180041142 - L1MB3 LINE L1 -222 5961 5893 677 180 0 7 chr6 9238416 9238555 -180040999 - L1MB3 LINE L1 -719 5461 5324 826 250 94 3 chr6 9238555 9238939 -180040615 + MER114 LTR ERV 178 596 -52 1870 90 105 18 chr6 9239460 9239737 -180039817 + AluSq SINE Alu 1 301 -12 2019 124 0 0 chr6 9240101 9240383 -180039171 + AluSx SINE Alu 15 296 -16 195 42 0 0 chr6 9240895 9240919 -180038635 + (CA)n Simple_repeat Simple_repeat 2 25 0 622 368 68 29 chr6 9241415 9241796 -180037758 - L2 LINE L2 -5 3267 2872 995 364 37 23 chr6 9241863 9242640 -180036914 - L2 LINE L2 -514 2800 2013 186 411 18 0 chr6 9242916 9242972 -180036582 - L2 LINE L2 -87 3185 3129 360 0 0 0 chr6 9243302 9243342 -180036212 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 415 286 97 35 chr6 9243342 9243569 -180035985 - L2 LINE L2 -20 3293 3053 461 250 170 9 chr6 9243639 9243863 -180035691 + LTR16C LTR ERVL 232 491 0 1299 257 31 53 chr6 9244221 9244707 -180034847 - LTR53 LTR ERVL -9 510 36 2220 127 0 0 chr6 9246755 9247063 -180032491 + AluSg SINE Alu 1 308 -2 24 32 0 0 chr6 9247757 9247788 -180031766 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 9247810 9247840 -180031714 + AT_rich Low_complexity Low_complexity 1 30 0 4984 220 58 41 chr6 9249760 9252500 -180027054 - L1MD1 LINE L1 0 6242 3451 1508 142 4 37 chr6 9252559 9252805 -180026749 - MER1B DNA MER1_type -1 338 101 1875 138 95 14 chr6 9252805 9253152 -180026402 + THE1C LTR MaLR 1 375 0 9642 117 53 11 chr6 9253152 9254668 -180024886 + THE1C-int LTR MaLR 1 1580 0 475 111 12 49 chr6 9254668 9254749 -180024805 + THE1C LTR MaLR 1 78 -297 22 35 0 0 chr6 9257043 9257072 -180022482 + AT_rich Low_complexity Low_complexity 1 29 0 558 264 171 39 chr6 9257520 9257602 -180021952 - L2 LINE L2 -1267 2047 1977 1790 208 8 24 chr6 9257602 9257973 -180021581 - MLT1A1 LTR MaLR 0 365 1 558 264 171 39 chr6 9257973 9258148 -180021406 - L2 LINE L2 -1337 1977 1756 2430 93 0 0 chr6 9258151 9258452 -180021102 + AluSg SINE Alu 1 301 -9 776 196 69 0 chr6 9258459 9258632 -180020922 + L1MB1 LINE L1 4748 4932 -1214 2622 45 0 3 chr6 9258672 9258982 -180020572 - AluY SINE Alu -2 309 1 2368 225 34 17 chr6 9259012 9259656 -180019898 - L1MB1 LINE L1 -783 5363 4709 * 4121 150 53 8 chr6 9259654 9260420 -180019134 + L1MB1 LINE L1 5355 6155 -13 213 39 0 0 chr6 9260423 9260449 -180019105 + (TAA)n Simple_repeat Simple_repeat 2 27 0 706 263 202 20 chr6 9260451 9260748 -180018806 - L2 LINE L2 -1625 1689 1339 433 285 73 0 chr6 9260806 9260929 -180018625 - MER58B DNA MER1_type 0 341 210 283 314 0 0 chr6 9261116 9261186 -180018368 - MER63 DNA MER1_type -7 1054 985 278 229 43 0 chr6 9261208 9261278 -180018276 - MER63 DNA MER1_type -349 713 15 480 250 86 0 chr6 9261755 9261883 -180017671 + MIR SINE MIR 86 224 -38 915 328 65 21 chr6 9261911 9262573 -180016981 + L2 LINE L2 2629 3313 0 2289 109 0 3 chr6 9262846 9263159 -180016395 - AluSx SINE Alu 0 312 1 206 250 0 17 chr6 9263682 9263742 -180015812 + T-rich Low_complexity Low_complexity 4 62 0 26 0 0 0 chr6 9264127 9264153 -180015401 + AT_rich Low_complexity Low_complexity 1 26 0 630 222 0 0 chr6 9265099 9265207 -180014347 + Tigger3(Golem) DNA MER2_type 1 108 -2921 198 0 0 0 chr6 9265207 9265229 -180014325 + (T)n Simple_repeat Simple_repeat 1 22 0 1951 83 8 0 chr6 9265283 9265549 -180014005 - L1PA8 LINE L1 0 6172 5905 4158 140 28 29 chr6 9265554 9266304 -180013250 + Tigger3(Golem) DNA MER2_type 2281 3029 0 375 266 0 62 chr6 9266306 9266434 -180013120 + L2 LINE L2 3180 3299 -14 295 287 59 30 chr6 9266538 9266639 -180012915 - L2 LINE L2 0 3313 3210 401 222 127 16 chr6 9266685 9266811 -180012743 + MER5A DNA MER1_type 43 182 -7 270 0 0 0 chr6 9267401 9267431 -180012123 + (CA)n Simple_repeat Simple_repeat 2 31 0 566 157 62 105 chr6 9268081 9268291 -180011263 - L1MA9 LINE L1 -1 6311 6111 344 237 49 105 chr6 9268303 9268476 -180011078 - MIR SINE MIR -62 146 32 317 273 20 40 chr6 9270191 9270290 -180009264 + MIR SINE MIR 82 178 -84 2134 90 0 0 chr6 9270832 9271099 -180008455 + AluSx SINE Alu 1 267 -45 212 158 0 0 chr6 9271284 9271322 -180008232 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 422 267 136 11 chr6 9271345 9271521 -180008033 + MIR SINE MIR 46 243 -19 285 245 59 29 chr6 9271564 9271666 -180007888 - MIR3 SINE MIR -3 205 101 1467 189 172 56 chr6 9271683 9271722 -180007832 - MLT2B1 LTR ERVL 0 520 487 279 114 0 0 chr6 9271722 9271766 -180007788 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1467 189 172 56 chr6 9271766 9272192 -180007362 - MLT2B1 LTR ERVL -33 487 1 1879 155 0 0 chr6 9272377 9272695 -180006859 - AluJb SINE Alu 0 318 1 40 49 0 0 chr6 9273966 9274027 -180005527 + AT_rich Low_complexity Low_complexity 1 61 0 372 175 0 151 chr6 9274777 9274903 -180004651 + L2 LINE L2 3206 3312 -1 573 356 103 20 chr6 9274948 9275338 -180004216 + L3 LINE CR1 1056 1477 -100 246 326 93 29 chr6 9276945 9277117 -180002437 + MIR3 SINE MIR 8 190 -18 490 303 87 15 chr6 9278363 9278558 -180000996 + MIR SINE MIR 21 229 -33 264 59 0 0 chr6 9279152 9279186 -180000368 + (TCC)n Simple_repeat Simple_repeat 1 34 0 2202 78 13 29 chr6 9279186 9279495 -180000059 - AluSg SINE Alu -6 304 1 207 286 195 0 chr6 9279526 9279603 -179999951 + MIR SINE MIR 56 147 -115 21 0 0 0 chr6 9280299 9280320 -179999234 + AT_rich Low_complexity Low_complexity 1 21 0 276 154 0 15 chr6 9280351 9280416 -179999138 - L1PB1 LINE L1 0 6151 6088 290 331 147 22 chr6 9281481 9281665 -179997889 + MIR SINE MIR 26 232 -30 880 210 23 0 chr6 9281684 9281860 -179997694 + MER5A DNA MER1_type 10 189 0 236 391 0 13 chr6 9282021 9282172 -179997382 - MIR SINE MIR -3 259 111 297 308 8 34 chr6 9282500 9282617 -179996937 + L2 LINE L2 3200 3313 0 442 294 75 37 chr6 9282821 9283008 -179996546 - MIR3 SINE MIR -1 207 14 727 266 29 14 chr6 9283140 9283347 -179996207 + MIR SINE MIR 53 262 0 713 206 0 0 chr6 9284014 9284140 -179995414 + FLAM_C SINE Alu 5 130 -3 223 234 16 23 chr6 9284148 9284276 -179995278 + (TA)n Simple_repeat Simple_repeat 1 127 0 240 35 0 0 chr6 9285498 9285527 -179994027 + (CA)n Simple_repeat Simple_repeat 2 30 0 1585 106 4 0 chr6 9286852 9287078 -179992476 - AluSg/x SINE Alu -3 309 83 206 321 0 0 chr6 9288549 9288605 -179990949 - L2 LINE L2 -12 3301 3246 714 264 26 45 chr6 9289083 9289462 -179990092 - L1M4 LINE L1 -2523 3623 3252 195 167 0 0 chr6 9289645 9289687 -179989867 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 272 223 60 18 chr6 9289703 9289869 -179989685 + (TA)n Simple_repeat Simple_repeat 1 173 0 1465 238 108 20 chr6 9292258 9292758 -179986796 + L1M4 LINE L1 3791 4334 -1812 300 200 12 50 chr6 9292824 9292889 -179986665 - MLT1F1 LTR MaLR -452 115 52 710 62 0 71 chr6 9292889 9293001 -179986553 - L1PA7 LINE L1 0 6154 6051 300 200 12 50 chr6 9293001 9293015 -179986539 - MLT1F1 LTR MaLR -515 52 39 1742 167 31 28 chr6 9293740 9294099 -179985455 + MLT1A1 LTR MaLR 6 365 0 550 195 18 44 chr6 9294105 9294218 -179985336 - FLAM_A SINE Alu -20 122 13 500 299 79 25 chr6 9294258 9294499 -179985055 - MIR SINE MIR -5 257 4 1454 169 71 42 chr6 9295176 9295513 -179984041 - MER7A DNA MER2_type -1 345 1 396 315 136 6 chr6 9295710 9295872 -179983682 - MIR SINE MIR -75 187 5 191 290 54 21 chr6 9295931 9296024 -179983530 + MIR SINE MIR 78 173 -89 192 267 67 44 chr6 9298172 9298262 -179981292 - L2 LINE L2 -14 3258 3167 1335 236 49 3 chr6 9298293 9298658 -179980896 + L1M4 LINE L1 3537 3918 -2228 * 6168 213 48 7 chr6 9298637 9300989 -179978565 + L1MB5 LINE L1 3715 6166 -8 473 260 78 0 chr6 9301071 9301225 -179978329 - Tigger6a DNA MER2_type -1 1082 917 9461 176 26 12 chr6 9301225 9304045 -179975509 + L1PA16 LINE L1 3305 6165 -1 3607 219 54 6 chr6 9304045 9304933 -179974621 - Tigger6a DNA MER2_type -138 945 15 903 186 194 75 chr6 9305304 9305630 -179973924 + MSTD LTR MaLR 10 396 0 192 266 147 28 chr6 9305638 9305747 -179973807 + MIR SINE MIR 64 185 -77 244 300 0 0 chr6 9305785 9305855 -179973699 - L2 LINE L2 -9 3263 3194 390 217 86 9 chr6 9406132 9406261 -179873293 - MSTC LTR MaLR -258 138 1 204 111 0 0 chr6 9406270 9406306 -179873248 + (A)n Simple_repeat Simple_repeat 1 36 0 2106 130 0 10 chr6 9407166 9407467 -179872087 + AluSx SINE Alu 1 298 -14 2292 95 0 0 chr6 9408879 9409173 -179870381 - AluSg SINE Alu -16 294 1 197 389 29 29 chr6 9409252 9409391 -179870163 - MIR3 SINE MIR -66 142 4 2373 58 3 26 chr6 9410510 9410820 -179868734 + AluY SINE Alu 1 303 -8 1415 278 56 7 chr6 9410920 9411511 -179868043 + L1MCc LINE L1 875 1494 -4929 267 31 0 0 chr6 9411538 9411570 -179867984 + (TG)n Simple_repeat Simple_repeat 1 32 0 1331 169 16 4 chr6 9411586 9411828 -179867726 - MLT2D LTR ERVL -169 245 1 650 301 47 50 chr6 9411850 9412172 -179867382 + L1MCb LINE L1 245 565 -5480 622 136 41 41 chr6 9412346 9412493 -179867061 - L1MA9 LINE L1 -87 6225 6079 400 160 90 0 chr6 9412495 9412595 -179866959 + L1MA9 LINE L1 6202 6310 -2 231 325 52 45 chr6 9412918 9412999 -179866555 + MIR SINE MIR 17 101 -161 2342 108 51 14 chr6 9412999 9413350 -179866204 - THE1B LTR MaLR 0 364 1 231 325 52 45 chr6 9413350 9413422 -179866132 + MIR SINE MIR 101 171 -91 2228 247 124 20 chr6 9413542 9414946 -179864608 + L1MCb LINE L1 765 2467 -4278 1291 284 39 11 chr6 9414928 9415562 -179863992 + L1MCc LINE L1 1897 2699 -4423 * 596 222 205 10 chr6 9415683 9415971 -179863583 - L1MCa LINE L1 -4830 1596 1253 241 353 150 38 chr6 9416573 9416972 -179862582 + L2 LINE L2 2315 2758 -556 324 0 0 0 chr6 9417101 9417137 -179862417 + (CA)n Simple_repeat Simple_repeat 2 37 0 193 373 111 30 chr6 9417165 9417436 -179862118 + L2 LINE L2 2972 3264 -8 800 279 21 18 chr6 9417514 9417797 -179861757 + MLT1G LTR MaLR 10 293 -297 271 280 96 16 chr6 9417906 9418031 -179861523 + MLT1G LTR MaLR 402 536 -6 4477 116 91 127 chr6 9418102 9419682 -179859872 - pTR5 LTR ERV1 0 2438 741 2202 113 0 0 chr6 9419687 9419979 -179859575 + AluSx SINE Alu 1 292 -20 45 19 0 0 chr6 9419980 9420032 -179859522 + AT_rich Low_complexity Low_complexity 1 52 0 2480 58 0 0 chr6 9422261 9422552 -179857002 - AluY SINE Alu -20 291 1 24 32 0 0 chr6 9423169 9423200 -179856354 + AT_rich Low_complexity Low_complexity 1 31 0 983 219 159 4 chr6 9423236 9423469 -179856085 + AluSx SINE Alu 26 294 -18 22 0 0 0 chr6 9423469 9423491 -179856063 + AT_rich Low_complexity Low_complexity 1 22 0 194 347 61 38 chr6 9425250 9425593 -179853961 + L2 LINE L2 2332 2682 -632 210 71 0 0 chr6 9425781 9425809 -179853745 + (T)n Simple_repeat Simple_repeat 1 28 0 231 405 68 35 chr6 9425821 9426132 -179853422 + L2 LINE L2 2943 3263 -9 2115 125 3 0 chr6 9426148 9426445 -179853109 - AluSx SINE Alu -14 298 1 186 43 0 0 chr6 9426779 9426802 -179852752 + (TG)n Simple_repeat Simple_repeat 2 24 0 275 221 15 0 chr6 9426815 9426883 -179852671 + GA-rich Low_complexity Low_complexity 2 70 0 26 0 0 0 chr6 9427799 9427825 -179851729 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr6 9428319 9428353 -179851201 + AT_rich Low_complexity Low_complexity 1 34 0 940 227 112 51 chr6 9428757 9429070 -179850484 - MLT1D LTR MaLR -151 354 23 853 0 0 0 chr6 9429081 9429177 -179850377 - AluYa5/8 SINE Alu 0 311 216 1135 168 17 0 chr6 9429851 9430083 -179849471 - L1MC3 LINE L1 -11 7774 7539 1522 185 176 45 chr6 9430092 9430585 -179848969 - L1MC3 LINE L1 -540 7245 6688 855 78 0 0 chr6 9430593 9430709 -179848845 + (TA)n Simple_repeat Simple_repeat 2 117 0 2382 76 6 19 chr6 9430709 9431024 -179848530 - AluY SINE Alu 0 311 1 24 0 0 0 chr6 9431033 9431057 -179848497 + AT_rich Low_complexity Low_complexity 1 24 0 304 100 80 0 chr6 9431347 9431397 -179848157 + U2 snRNA snRNA 1 54 -134 21 0 0 0 chr6 9431399 9431420 -179848134 + AT_rich Low_complexity Low_complexity 1 21 0 246 349 63 37 chr6 9431672 9431861 -179847693 - L2 LINE L2 -191 3081 2888 573 40 0 0 chr6 9431892 9431967 -179847587 + MER41A LTR ERV1 395 469 -85 5000 117 1 6 chr6 9432046 9432405 -179847149 - L1PB1 LINE L1 -1 6150 5791 351 0 0 0 chr6 9432405 9432444 -179847110 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 5000 117 1 6 chr6 9432444 9432877 -179846677 - L1PB1 LINE L1 -360 5791 5362 583 79 0 0 chr6 9432877 9432966 -179846588 + L1P LINE L1 5267 5355 -796 199 241 29 176 chr6 9433036 9433206 -179846348 - MIR SINE MIR -29 233 89 22 0 0 0 chr6 9433311 9433333 -179846221 + AT_rich Low_complexity Low_complexity 1 22 0 1864 103 4 27 chr6 9433342 9433604 -179845950 + AluSx SINE Alu 44 299 -13 2005 168 5 35 chr6 9433858 9434262 -179845292 + MER57A LTR ERV1 12 403 0 2239 104 0 0 chr6 9434318 9434615 -179844939 + AluSq SINE Alu 1 297 -16 2154 109 0 3 chr6 9435216 9435510 -179844044 + AluSx SINE Alu 1 293 -19 3542 141 30 73 chr6 9436106 9436816 -179842738 - LTR58 LTR ERV1 0 679 1 230 191 32 48 chr6 9437011 9437074 -179842480 + L2 LINE L2 3191 3252 -61 204 67 0 0 chr6 9437089 9437119 -179842435 + (A)n Simple_repeat Simple_repeat 1 30 0 285 368 0 0 chr6 9437494 9437600 -179841954 - MIR SINE MIR -105 157 52 667 212 21 93 chr6 9437767 9438003 -179841551 + MER20 DNA MER1_type 1 219 0 338 207 134 0 chr6 9438170 9438252 -179841302 + MER94 DNA DNA 1 93 -41 2014 138 125 33 chr6 9439040 9439432 -179840122 - MSTA LTR MaLR 0 428 1 221 136 0 23 chr6 9439797 9439841 -179839713 + (GGGAGA)n Simple_repeat Simple_repeat 4 46 0 192 158 0 0 chr6 9440474 9440512 -179839042 + T-rich Low_complexity Low_complexity 2 39 0 25 31 0 0 chr6 9441216 9441248 -179838306 + AT_rich Low_complexity Low_complexity 1 32 0 2411 136 64 5 chr6 9441437 9441841 -179837713 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr6 9442148 9442170 -179837384 + AT_rich Low_complexity Low_complexity 1 22 0 6079 120 28 19 chr6 9442173 9443618 -179835936 + L1PA13 LINE L1 4695 6157 -6 2322 63 0 13 chr6 9444395 9444698 -179834856 - AluY SINE Alu -12 299 1 237 289 24 0 chr6 9445892 9445975 -179833579 + L2 LINE L2 3203 3287 -26 338 266 12 12 chr6 9446040 9446209 -179833345 + GA-rich Low_complexity Low_complexity 1 169 0 198 103 0 0 chr6 9446607 9446636 -179832918 + (TTCTCC)n Simple_repeat Simple_repeat 6 34 0 3324 163 56 22 chr6 9447011 9447237 -179832317 + L1PB4 LINE L1 5436 5653 -503 1706 143 0 0 chr6 9447237 9447488 -179832066 + AluSc SINE Alu 39 289 -20 3324 163 56 22 chr6 9447488 9447955 -179831599 + L1PB4 LINE L1 5653 6153 -3 702 145 0 0 chr6 9448342 9448480 -179831074 + (TG)n Simple_repeat Simple_repeat 1 138 0 1020 221 14 5 chr6 9449714 9449931 -179829623 + MER20 DNA MER1_type 1 219 0 2364 102 0 6 chr6 9450663 9450978 -179828576 - AluSq SINE Alu 0 313 1 1330 216 14 59 chr6 9452333 9452759 -179826795 - L1MA9 LINE L1 -38 6274 5868 227 143 24 0 chr6 9452763 9452805 -179826749 - L1MA9 LINE L1 -553 5618 5576 * 2318 228 8 4 chr6 9452800 9453323 -179826231 - L1 LINE L1 -1858 4288 3764 447 221 67 67 chr6 9453324 9453473 -179826081 + L2 LINE L2 3159 3307 -6 472 213 133 33 chr6 9453629 9453779 -179825775 - MIR SINE MIR -70 192 28 1947 151 148 3 chr6 9453861 9454233 -179825321 + MSTA LTR MaLR 1 426 -2 181 391 33 11 chr6 9454325 9454417 -179825137 - MIR SINE MIR -92 170 77 23 33 0 0 chr6 9454643 9454673 -179824881 + AT_rich Low_complexity Low_complexity 1 30 0 1854 166 0 34 chr6 9454748 9455068 -179824486 + AluJb SINE Alu 4 312 0 1483 206 81 7 chr6 9455131 9455492 -179824062 - MLT2B1 LTR ERVL 0 397 1 238 299 45 0 chr6 9455859 9455926 -179823628 - L2 LINE L2 -18 3295 3226 28 48 0 0 chr6 9456735 9456777 -179822777 + AT_rich Low_complexity Low_complexity 1 42 0 1304 176 16 80 chr6 9457136 9457793 -179821761 + L1MB1 LINE L1 4981 5659 -509 2321 106 3 0 chr6 9457793 9458105 -179821449 + AluSq SINE Alu 1 313 0 1304 176 16 80 chr6 9458105 9458580 -179820974 + L1MB1 LINE L1 5659 6163 -5 523 170 226 0 chr6 9459405 9459511 -179820043 + FLAM_C SINE Alu 1 130 -3 281 362 27 27 chr6 9461052 9461237 -179818317 - MIR SINE MIR -71 191 7 283 368 17 0 chr6 9461304 9461421 -179818133 + MIR3 SINE MIR 82 200 -8 227 374 24 0 chr6 9461450 9461533 -179818021 - MIR3 SINE MIR -1 207 123 941 228 10 5 chr6 9462168 9462365 -179817189 - MLT1A1 LTR MaLR 0 365 168 908 137 95 6 chr6 9462563 9462731 -179816823 - MLT1A1 LTR MaLR -180 185 3 2511 289 91 43 chr6 9462736 9463408 -179816146 + L1MCc LINE L1 96 734 -5689 1370 228 18 97 chr6 9463408 9463965 -179815589 - LTR40a LTR ERVL -2 517 5 2511 289 91 43 chr6 9463965 9464654 -179814900 + L1MCc LINE L1 734 1523 -4900 1140 261 47 46 chr6 9464770 9465379 -179814175 + L1MCc LINE L1 1605 2290 -4651 1057 55 7 7 chr6 9465379 9465525 -179814029 + (GGAA)n Simple_repeat Simple_repeat 3 148 0 1140 261 47 46 chr6 9465525 9465669 -179813885 + L1MCc LINE L1 2290 2432 -4509 306 148 0 0 chr6 9465808 9465862 -179813692 + (TAA)n Simple_repeat Simple_repeat 2 55 0 311 296 20 0 chr6 9466497 9466595 -179812959 + MIR SINE MIR 150 249 -13 680 266 142 88 chr6 9467111 9467520 -179812034 + L2 LINE L2 1982 2412 -902 23 0 0 0 chr6 9467533 9467556 -179811998 + AT_rich Low_complexity Low_complexity 1 23 0 544 257 13 41 chr6 9467884 9468137 -179811417 - L2 LINE L2 0 3313 3005 329 293 49 118 chr6 9468843 9469130 -179810424 - L2 LINE L2 -2 3311 3045 202 273 23 23 chr6 9469161 9469289 -179810265 + (TA)n Simple_repeat Simple_repeat 2 129 0 460 294 55 14 chr6 9470777 9470995 -179808559 + MER110A LTR ERV1 219 445 -23 22 35 0 0 chr6 9471991 9472020 -179807534 + AT_rich Low_complexity Low_complexity 1 29 0 335 245 43 39 chr6 9472100 9472332 -179807222 + L1M4 LINE L1 1242 1565 -5069 3054 244 82 30 chr6 9472493 9474086 -179805468 + L1MCb LINE L1 1 1735 -4829 1224 209 141 9 chr6 9474086 9474406 -179805148 + MLT1A1 LTR MaLR 4 365 0 3054 244 82 30 chr6 9474406 9474834 -179804720 + L1MCb LINE L1 1735 2139 -4425 874 163 26 0 chr6 9474857 9475010 -179804544 + MER76 LTR ERV 1 157 -531 652 314 80 36 chr6 9475730 9476141 -179803413 + L1ME LINE L1 24 452 -5618 859 299 87 22 chr6 9476165 9476188 -179803366 + L1ME LINE L1 93 113 -5967 2127 124 0 3 chr6 9476188 9476487 -179803067 - AluSx SINE Alu -14 298 1 859 299 87 22 chr6 9476487 9477691 -179801863 + L1ME LINE L1 113 1521 -4559 976 264 80 25 chr6 9477711 9478743 -179800811 - L1MCc LINE L1 -4520 2421 1246 593 219 11 11 chr6 9478758 9478936 -179800618 + CT-rich Low_complexity Low_complexity 1 178 0 570 155 50 0 chr6 9478947 9479108 -179800446 + CT-rich Low_complexity Low_complexity 2 170 0 288 338 183 21 chr6 9479178 9479462 -179800092 - L1MCc LINE L1 -5226 1197 868 702 293 103 36 chr6 9479660 9480121 -179799433 - L1MCc LINE L1 -5842 581 79 1371 163 132 0 chr6 9480121 9480274 -179799280 - AluJo SINE Alu -21 291 160 201 39 0 0 chr6 9480274 9480300 -179799254 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1371 163 132 0 chr6 9480300 9480403 -179799151 - AluJo SINE Alu -152 160 1 702 293 103 36 chr6 9480403 9480464 -179799090 - L1MCc LINE L1 -6344 79 24 6470 45 13 0 chr6 9480667 9481454 -179798100 - L1PA7 LINE L1 -12 6142 5346 551 63 25 0 chr6 9482148 9482227 -179797327 + (GAAA)n Simple_repeat Simple_repeat 1 81 0 211 308 103 17 chr6 9483031 9483148 -179796406 - MIR3 SINE MIR -9 199 73 419 280 84 109 chr6 9483203 9484370 -179795184 + L1MEc LINE L1 36 1173 -5223 408 254 31 6 chr6 9484583 9484816 -179794738 + L1MEc LINE L1 2179 4018 -2197 954 241 72 4 chr6 9485329 9485565 -179793989 + HERVL40 LTR ERVL 5279 5530 0 995 285 51 42 chr6 9485565 9485919 -179793635 + LTR40b LTR ERVL 1 357 -105 297 169 0 0 chr6 9485920 9485979 -179793575 + CT-rich Low_complexity Low_complexity 1 59 0 255 125 0 0 chr6 9485974 9486014 -179793540 + (TCCCC)n Simple_repeat Simple_repeat 2 41 0 * 504 231 9 36 chr6 9486017 9486218 -179793336 - L1MEc LINE L1 -4509 1938 1734 387 161 0 0 chr6 9486227 9486294 -179793260 + LTR40a LTR ERVL 411 519 0 1583 234 22 80 chr6 9486305 9486766 -179792788 + L1MC4a LINE L1 6187 6604 -1204 185 65 32 0 chr6 9486766 9486797 -179792757 + (TATG)n Simple_repeat Simple_repeat 4 35 0 1583 234 22 80 chr6 9486797 9486960 -179792594 + L1MC4a LINE L1 6604 6775 -1033 321 201 112 45 chr6 9487040 9487174 -179792380 - L1MEc LINE L1 -3239 2976 2834 376 191 48 0 chr6 9487179 9487263 -179792291 - L1MEc LINE L1 -4316 2080 1993 1193 299 66 42 chr6 9487373 9487767 -179791787 - L1MEc LINE L1 -4578 1818 1435 2273 115 0 0 chr6 9487767 9488079 -179791475 - AluSq SINE Alu -1 312 1 1193 299 66 42 chr6 9488079 9488658 -179790896 - L1MEc LINE L1 -4961 1435 822 422 55 0 0 chr6 9488658 9488713 -179790841 - MLT2A1 LTR ERVL 0 453 399 203 130 22 22 chr6 9488758 9488804 -179790750 + (TA)n Simple_repeat Simple_repeat 2 47 0 271 83 83 0 chr6 9488813 9488861 -179790693 - HERVL LTR ERVL -144 5510 5459 2679 88 39 5 chr6 9488893 9489277 -179790277 - MLT2A1 LTR ERVL -44 400 4 44589 68 7 8 chr6 9489280 9494939 -179784615 - HERVL-A1 LTR ERVL 0 5654 2 317 113 38 0 chr6 9494940 9494993 -179784561 - MLT2A1 LTR ERVL 0 453 399 297 230 0 0 chr6 9495013 9495191 -179784363 + (TA)n Simple_repeat Simple_repeat 1 178 0 326 194 32 0 chr6 9495192 9495444 -179784110 + (TCTA)n Simple_repeat Simple_repeat 1 260 0 380 208 0 5 chr6 9495457 9495830 -179783724 + (TA)n Simple_repeat Simple_repeat 1 371 0 2822 79 26 5 chr6 9495831 9496222 -179783332 - MLT2A1 LTR ERVL -45 399 1 1379 274 38 84 chr6 9496223 9497043 -179782511 - L1MEc LINE L1 -5571 825 44 350 148 108 37 chr6 9497042 9497151 -179782403 + L1ME LINE L1 5540 5660 -475 * 1052 220 11 51 chr6 9497149 9497400 -179782154 + L1MC4 LINE L1 6766 7007 -1035 2074 103 7 13 chr6 9497400 9497700 -179781854 + AluSg1 SINE Alu 1 298 -11 1052 220 11 51 chr6 9497700 9497721 -179781833 + L1MC4 LINE L1 7007 7027 -1015 542 243 80 26 chr6 9497726 9497908 -179781646 + MER63 DNA MER1_type 4 1673 -15 1363 237 130 75 chr6 9497920 9498359 -179781195 + L1MC4 LINE L1 7022 7522 -520 1864 162 52 16 chr6 9498359 9498742 -179780812 - MLT2C1 LTR ERVL 0 397 1 1363 237 130 75 chr6 9498742 9499071 -179780483 + L1MC4 LINE L1 7522 7832 -210 1219 192 75 99 chr6 9499133 9499549 -179780005 + MLT1D LTR MaLR 48 453 -52 1278 201 7 18 chr6 9499573 9499847 -179779707 - L1PA16 LINE L1 -3 6163 5893 204 314 20 0 chr6 9502999 9503050 -179776504 - L2 LINE L2 -78 3194 3143 1658 228 20 15 chr6 9503934 9504328 -179775226 - MSTD LTR MaLR 0 396 1 327 85 0 0 chr6 9505028 9505075 -179774479 + (CA)n Simple_repeat Simple_repeat 2 48 0 1557 155 72 72 chr6 9505948 9506261 -179773293 + THE1C LTR MaLR 1 316 -59 2464 54 3 0 chr6 9506261 9506557 -179772997 + AluY SINE Alu 1 297 -14 1557 155 72 72 chr6 9506557 9506618 -179772936 + THE1C LTR MaLR 315 375 0 705 131 0 0 chr6 9506768 9506867 -179772687 + AluS SINE Alu 1 99 -213 973 114 0 0 chr6 9506871 9507002 -179772552 - AluSg/x SINE Alu -36 276 146 321 280 30 10 chr6 9508868 9508968 -179770586 + MER5A DNA MER1_type 87 188 -1 2152 109 0 3 chr6 9510996 9511289 -179768265 - AluSc SINE Alu -17 292 1 258 32 0 0 chr6 9511345 9511376 -179768178 + (CA)n Simple_repeat Simple_repeat 2 32 0 194 253 0 11 chr6 9511658 9511753 -179767801 + (TA)n Simple_repeat Simple_repeat 1 94 0 22 35 0 0 chr6 9511756 9511785 -179767769 + AT_rich Low_complexity Low_complexity 1 29 0 242 293 7 82 chr6 9512087 9512234 -179767320 + L1ME LINE L1 5625 5760 -361 872 244 71 0 chr6 9512802 9513027 -179766527 - MLT1E1 LTR MaLR -1 653 413 2378 143 26 3 chr6 9513027 9513406 -179766148 - MSTA LTR MaLR 0 428 41 226 236 228 47 chr6 9513422 9513549 -179766005 - MLT1E1 LTR MaLR -235 389 240 475 183 0 0 chr6 9513630 9513712 -179765842 - MLT1E1 LTR MaLR -571 83 2 2429 71 0 0 chr6 9515192 9515488 -179764066 + AluY SINE Alu 1 296 -15 2145 167 0 8 chr6 9515646 9516011 -179763543 - MLT1A1 LTR MaLR 0 365 4 287 219 24 0 chr6 9517563 9517645 -179761909 - L1MC4 LINE L1 -1344 6698 6615 435 224 43 17 chr6 9517691 9517807 -179761747 - L1MA9 LINE L1 -93 6219 6101 * 1495 169 21 71 chr6 9517799 9518136 -179761418 + L1MA9 LINE L1 5575 5894 -418 2454 222 53 19 chr6 9518257 9518882 -179760672 + MER82 DNA MER2_type 2 647 -6 335 280 56 28 chr6 9519219 9519326 -179760228 + L2 LINE L2 3200 3309 -4 1786 151 7 10 chr6 9519558 9519856 -179759698 - AluSq SINE Alu -16 297 1 252 314 9 38 chr6 9520380 9520485 -179759069 - MER5A DNA MER1_type -3 186 85 979 175 0 0 chr6 9521037 9521197 -179758357 + FRAM SINE Alu 2 161 -5 426 121 0 0 chr6 9521281 9521347 -179758207 + (CA)n Simple_repeat Simple_repeat 2 67 0 246 291 58 0 chr6 9523701 9523787 -179755767 + MIR SINE MIR 158 248 -14 192 229 0 21 chr6 9523820 9523868 -179755686 + L2 LINE L2 3266 3312 -1 348 334 49 0 chr6 9524047 9524170 -179755384 - MIR SINE MIR -65 143 34 407 331 66 13 chr6 9524625 9524776 -179754778 + L3 LINE CR1 1308 1466 -111 4719 59 3 0 chr6 9526974 9527567 -179751987 + L1PA6 LINE L1 5560 6154 0 261 74 37 19 chr6 9530175 9530229 -179749325 + (CA)n Simple_repeat Simple_repeat 2 56 0 2410 266 124 24 chr6 9530498 9531738 -179747816 - L1ME3A LINE L1 -15 6155 5041 2262 108 7 7 chr6 9531738 9532045 -179747509 - AluSx SINE Alu -5 307 1 2410 266 124 24 chr6 9532045 9533342 -179746212 - L1ME3A LINE L1 -1129 5041 3353 931 281 129 14 chr6 9533353 9533918 -179745636 - L1ME3A LINE L1 -3212 2934 2305 384 298 62 13 chr6 9534503 9534776 -179744778 - L1MC/D LINE L1 -662 5512 5258 364 281 113 45 chr6 9535115 9535407 -179744147 + L1MC4a LINE L1 2664 2975 -3171 1258 256 149 47 chr6 9535458 9536227 -179743327 + L1MC4a LINE L1 5383 6230 -1578 1434 285 118 16 chr6 9536429 9537135 -179742419 + L1MC4a LINE L1 6483 7260 -548 256 262 0 106 chr6 9537230 9537371 -179742183 + LTR16A LTR ERVL 93 218 -232 628 222 39 6 chr6 9537440 9537620 -179741934 + LTR16A1 LTR ERVL 272 457 0 488 260 64 101 chr6 9537704 9538281 -179741273 + L1MC4 LINE L1 7470 8025 -17 661 229 123 50 chr6 9538308 9538610 -179740944 + L1MD3 LINE L1 6945 7268 -727 368 308 0 0 chr6 9538616 9538723 -179740831 + MLT1F1 LTR MaLR 1 107 -460 1869 209 117 13 chr6 9538726 9539272 -179740282 + L1MD3 LINE L1 6239 6338 -6 2246 138 74 10 chr6 9539426 9539832 -179739722 + MSTB1 LTR MaLR 1 432 0 330 260 65 22 chr6 9539913 9540144 -179739410 - L1M4 LINE L1 -2867 3279 3039 701 172 14 0 chr6 9541002 9541147 -179738407 + GA-rich Low_complexity Low_complexity 3 149 0 1050 115 0 16 chr6 9541150 9541332 -179738222 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 21 0 0 0 chr6 9541505 9541526 -179738028 + AT_rich Low_complexity Low_complexity 1 21 0 264 231 0 0 chr6 9541981 9542033 -179737521 - L2 LINE L2 -1 3312 3261 357 306 65 9 chr6 9543298 9543406 -179736148 + MIR SINE MIR 33 146 -116 257 347 41 24 chr6 9544173 9544343 -179735211 + MIR3 SINE MIR 28 200 -8 28 29 0 0 chr6 9545018 9545053 -179734501 + AT_rich Low_complexity Low_complexity 1 35 0 264 167 0 0 chr6 9546761 9546809 -179732745 + (TA)n Simple_repeat Simple_repeat 1 48 0 315 0 0 0 chr6 9546809 9546844 -179732710 + (TG)n Simple_repeat Simple_repeat 2 36 0 264 326 22 0 chr6 9546912 9547004 -179732550 + MIR SINE MIR 38 131 -77 194 174 22 0 chr6 9547057 9547103 -179732451 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2121 119 3 3 chr6 9550154 9550449 -179729105 - AluY SINE Alu -16 295 1 200 365 16 0 chr6 9552322 9552385 -179727169 - MIR SINE MIR -110 98 35 343 274 105 20 chr6 9553121 9553274 -179726280 - MIR3 SINE MIR -2 206 41 269 279 11 0 chr6 9553340 9553446 -179726108 + GA-rich Low_complexity Low_complexity 1 185 0 234 227 106 0 chr6 9556038 9556104 -179723450 - MIR SINE MIR -56 206 134 292 289 74 44 chr6 9556674 9556809 -179722745 - MIR3 SINE MIR -28 180 42 1915 202 84 16 chr6 9557251 9557702 -179721852 + LTR48 LTR ERV1 1 482 -305 329 256 81 0 chr6 9557718 9557804 -179721750 + Tigger4(Zombi) DNA MER2_type 1 93 -2638 1837 162 28 0 chr6 9557839 9558129 -179721425 + AluJb SINE Alu 5 302 -10 301 173 0 0 chr6 9558141 9558193 -179721361 + L1MC4 LINE L1 6652 6703 -1339 180 176 0 0 chr6 9558193 9558227 -179721327 + (TATG)n Simple_repeat Simple_repeat 2 35 0 3394 138 16 12 chr6 9558229 9558792 -179720762 + Tigger4(Zombi) DNA MER2_type 2167 2731 0 704 207 47 21 chr6 9558819 9559012 -179720542 + LTR48 LTR ERV1 590 787 0 210 143 0 0 chr6 9559932 9559967 -179719587 + (CA)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr6 9560026 9560047 -179719507 + (CA)n Simple_repeat Simple_repeat 2 22 0 183 364 41 16 chr6 9561291 9561412 -179718142 - L2 LINE L2 -23 3290 3167 1741 112 9 0 chr6 9562747 9562979 -179716575 + AluSg SINE Alu 1 234 -76 23 0 0 0 chr6 9563059 9563082 -179716472 + AT_rich Low_complexity Low_complexity 1 23 0 327 230 30 96 chr6 9563663 9563798 -179715756 + LTR16A1 LTR ERVL 320 445 -12 374 309 80 64 chr6 9563803 9564227 -179715327 + L1 LINE L1 3916 4346 -1800 21 0 0 0 chr6 9564235 9564256 -179715298 + AT_rich Low_complexity Low_complexity 1 21 0 353 208 17 22 chr6 9564535 9564713 -179714841 + (TA)n Simple_repeat Simple_repeat 2 178 0 542 267 124 10 chr6 9564936 9565243 -179714311 + L1M4 LINE L1 2148 2489 -3657 * 984 197 11 0 chr6 9565238 9565416 -179714138 + L1MDa LINE L1 10 189 -6351 * 2292 189 50 45 chr6 9565413 9566099 -179713455 + L1MDa LINE L1 1055 1743 -4797 236 223 0 39 chr6 9566103 9566206 -179713348 + GA-rich Low_complexity Low_complexity 3 101 0 744 140 19 76 chr6 9566221 9566336 -179713218 + L1MDa LINE L1 1791 1896 -4644 2725 26 3 0 chr6 9566336 9566646 -179712908 + AluY SINE Alu 1 311 0 744 140 19 76 chr6 9566646 9566687 -179712867 + L1MDa LINE L1 1896 1938 -4602 24 0 0 0 chr6 9566847 9566871 -179712683 + AT_rich Low_complexity Low_complexity 1 24 0 202 136 0 23 chr6 9567045 9567089 -179712465 + (TAAAAA)n Simple_repeat Simple_repeat 2 44 0 2250 113 0 13 chr6 9567744 9568054 -179711500 + AluSg SINE Alu 2 307 -3 21 71 0 0 chr6 9568459 9568501 -179711053 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr6 9568637 9568669 -179710885 + AT_rich Low_complexity Low_complexity 1 32 0 1997 138 53 0 chr6 9570011 9570330 -179709224 - MER7A DNA MER2_type -12 334 1 24 0 0 0 chr6 9571562 9571586 -179707968 + AT_rich Low_complexity Low_complexity 1 24 0 359 234 29 91 chr6 9571603 9571778 -179707776 - MLT1K LTR MaLR -14 574 411 447 87 0 0 chr6 9572672 9572741 -179706813 + (CA)n Simple_repeat Simple_repeat 2 70 0 1885 175 46 3 chr6 9572853 9573224 -179706330 + MLT1B LTR MaLR 1 387 -3 2045 123 33 0 chr6 9574974 9575275 -179704279 + AluSq SINE Alu 1 311 -2 657 259 85 0 chr6 9575558 9575759 -179703795 + MER46C DNA MER2_type 3 220 -118 610 288 65 78 chr6 9575794 9576378 -179703176 + L2 LINE L2 2575 3156 -157 390 42 0 0 chr6 9576378 9576426 -179703128 + (TATG)n Simple_repeat Simple_repeat 3 50 0 610 288 65 78 chr6 9576426 9576565 -179702989 + L2 LINE L2 3156 3295 -18 2198 50 8 0 chr6 9578506 9578766 -179700788 + AluY SINE Alu 38 299 -12 3688 279 80 39 chr6 9579105 9581439 -179698115 + L1MEc LINE L1 35 2463 -3933 499 279 19 13 chr6 9582812 9582966 -179696588 + L2 LINE L2 3159 3313 0 33 0 0 0 chr6 9584251 9584284 -179695270 + AT_rich Low_complexity Low_complexity 1 33 0 206 327 0 0 chr6 9584578 9584633 -179694921 + G-rich Low_complexity Low_complexity 1 55 0 429 355 71 24 chr6 9584698 9585036 -179694518 + LTR16A LTR ERVL 92 445 -5 505 319 35 45 chr6 9585103 9585363 -179694191 - MIR SINE MIR -11 251 6 287 309 0 0 chr6 9585434 9585518 -179694036 + L1MEc LINE L1 3708 3791 -2424 336 356 52 7 chr6 9585550 9585859 -179693695 - L1MEc LINE L1 -4586 1810 1488 201 74 0 0 chr6 9586692 9586719 -179692835 + (TTCTC)n Simple_repeat Simple_repeat 4 30 0 5590 93 2 6 chr6 9587015 9587809 -179691745 + L1PA13 LINE L1 5372 6162 -1 25 31 0 0 chr6 9588432 9588464 -179691090 + AT_rich Low_complexity Low_complexity 1 32 0 208 195 167 34 chr6 9588636 9588734 -179690820 - MIR SINE MIR -27 181 75 1053 156 17 0 chr6 9589951 9590131 -179689423 - L1PA16 LINE L1 -9 6157 5975 2125 116 0 0 chr6 9592370 9592655 -179686899 + AluSc SINE Alu 1 285 -24 335 220 154 0 chr6 9592717 9592808 -179686746 - MIR SINE MIR -86 176 72 1697 155 0 126 chr6 9593128 9593291 -179686263 + MLT1B LTR MaLR 1 183 -207 2137 99 0 7 chr6 9593291 9593603 -179685951 - AluSc SINE Alu 0 310 1 1697 155 0 126 chr6 9593603 9593884 -179685670 + MLT1B LTR MaLR 183 390 0 1887 167 7 0 chr6 9594262 9594568 -179684986 - AluJb SINE Alu -4 308 1 371 287 0 0 chr6 9594588 9594675 -179684879 + MIR3 SINE MIR 92 178 -30 396 351 71 54 chr6 9595039 9595278 -179684276 - L2 LINE L2 -13 3259 3017 243 301 32 32 chr6 9595534 9595627 -179683927 + MLT1J LTR MaLR 226 318 -193 507 177 0 0 chr6 9597487 9597566 -179681988 + AluSg/x SINE Alu 210 288 -21 2002 120 14 3 chr6 9598012 9598303 -179681251 + AluSp SINE Alu 1 294 -19 1315 132 14 5 chr6 9598303 9598516 -179681038 + L1PB3 LINE L1 5938 6152 -2 333 355 17 17 chr6 9598540 9598712 -179680842 - L2 LINE L2 -1303 2011 1840 1269 251 116 30 chr6 9598847 9599338 -179680216 + MLT1F LTR MaLR 3 535 -7 5033 157 155 55 chr6 9599670 9601120 -179678434 - pTR5 LTR ERV1 0 2438 743 961 143 0 0 chr6 9601120 9601267 -179678287 + AluSg/x SINE Alu 166 312 0 189 0 0 0 chr6 9601334 9601355 -179678199 + (A)n Simple_repeat Simple_repeat 1 21 0 245 293 139 43 chr6 9601355 9601563 -179677991 - L2 LINE L2 -2418 896 669 2190 95 3 43 chr6 9601831 9602157 -179677397 - AluSp SINE Alu 0 313 1 220 320 117 0 chr6 9602912 9603015 -179676539 + L2 LINE L2 3199 3313 0 1566 201 40 3 chr6 9603072 9603371 -179676183 - AluJo SINE Alu -2 310 1 22 35 0 0 chr6 9603470 9603499 -179676055 + AT_rich Low_complexity Low_complexity 1 29 0 593 156 18 0 chr6 9603857 9603966 -179675588 - MSTD LTR MaLR -1 395 285 2664 224 31 9 chr6 9604239 9604686 -179674868 - L1 LINE L1 -2952 3194 2723 2741 216 70 20 chr6 9604686 9605372 -179674182 - MER72 LTR ERV1 -2 720 1 2664 224 31 9 chr6 9605372 9605666 -179673888 - L1 LINE L1 -3423 2723 2437 358 333 89 42 chr6 9605672 9605885 -179673669 + L1MEc LINE L1 557 779 -6046 1290 196 156 19 chr6 9606099 9606472 -179673082 + MSTB LTR MaLR 1 424 -2 5396 163 25 57 chr6 9606476 9606521 -179673033 + MSTB-int LTR MaLR 3 48 -1532 1890 132 50 4 chr6 9606521 9606801 -179672753 + AluSp SINE Alu 2 294 -19 5396 163 25 57 chr6 9606801 9607918 -179671636 + MSTB-int LTR MaLR 48 1128 -452 886 286 36 47 chr6 9608203 9609009 -179670545 + L1MEc LINE L1 1082 1918 -4726 25 75 0 0 chr6 9609106 9609159 -179670395 + AT_rich Low_complexity Low_complexity 1 53 0 199 316 63 42 chr6 9609269 9609318 -179670236 + MIR3 SINE MIR 94 140 -68 1995 147 31 6 chr6 9609318 9609673 -179669881 + MER47A DNA MER2_type 1 364 -2 199 316 63 42 chr6 9609673 9609718 -179669836 + MIR3 SINE MIR 140 190 -18 248 226 0 32 chr6 9616240 9616302 -179663252 - MIR SINE MIR 0 262 203 2512 84 3 0 chr6 9617035 9617343 -179662211 - AluY SINE Alu 0 311 3 462 281 77 77 chr6 9617352 9617711 -179661843 + L1MEc LINE L1 3186 3547 -3097 2057 139 0 7 chr6 9617711 9618014 -179661540 + AluSg SINE Alu 1 301 -9 462 281 77 77 chr6 9618014 9618085 -179661469 + L1MEc LINE L1 3546 3616 -3028 324 380 37 53 chr6 9619308 9619632 -179659922 + L1MEc LINE L1 4132 4446 -2198 1910 107 13 60 chr6 9619632 9619966 -179659588 + AluSx SINE Alu 2 321 0 324 380 37 53 chr6 9619966 9620209 -179659345 + L1MEc LINE L1 4446 4691 -1953 9165 194 22 28 chr6 9620497 9622770 -179656784 + L1 LINE L1 3115 5373 -773 512 190 10 10 chr6 9622871 9622971 -179656583 - AluY SINE Alu -210 100 1 247 301 151 0 chr6 9624600 9624673 -179654881 - L2 LINE L2 -4 3309 3226 2203 121 0 3 chr6 9624849 9625155 -179654399 + AluSq SINE Alu 1 305 -8 488 278 73 37 chr6 9625308 9625733 -179653821 - L1M2 LINE L1 -509 5657 5256 326 26 0 0 chr6 9625941 9625979 -179653575 - L1PA10 LINE L1 -12 6156 6119 276 30 0 0 chr6 9626143 9626176 -179653378 + (TTA)n Simple_repeat Simple_repeat 1 33 0 257 338 15 44 chr6 9626177 9626313 -179653241 - MIR SINE MIR -71 137 6 296 322 51 25 chr6 9626321 9626439 -179653115 + L2 LINE L2 3143 3263 -9 530 298 11 27 chr6 9626626 9626814 -179652740 - MER5A DNA MER1_type -1 188 4 191 337 204 17 chr6 9628622 9628794 -179650760 - L2 LINE L2 -388 2926 2723 232 367 15 45 chr6 9628836 9629035 -179650519 - L2 LINE L2 -571 2743 2551 256 248 124 26 chr6 9629082 9629195 -179650359 - L2 LINE L2 -927 2387 2264 25 31 0 0 chr6 9630161 9630193 -179649361 + AT_rich Low_complexity Low_complexity 1 32 0 2056 139 0 3 chr6 9630605 9630906 -179648648 - AluJb SINE Alu -12 300 1 1630 179 17 7 chr6 9631570 9631861 -179647693 + AluJb SINE Alu 1 294 -18 309 242 21 86 chr6 9631940 9632126 -179647428 + L1M4 LINE L1 4493 4666 -1480 262 326 0 0 chr6 9632177 9632263 -179647291 - MIR SINE MIR -97 165 80 876 307 43 12 chr6 9632515 9633092 -179646462 + L1MC/D LINE L1 2236 2830 -3316 366 341 72 49 chr6 9633289 9633562 -179645992 + L1MC/D LINE L1 5359 5635 -486 198 0 0 0 chr6 9633979 9634001 -179645553 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 724 289 9 5 chr6 9634570 9634781 -179644773 - MIR SINE MIR -3 259 48 355 125 23 68 chr6 9634912 9635000 -179644554 + MER74A LTR ERVL 6 89 -469 * 1248 164 45 39 chr6 9634975 9635261 -179644293 + MER74A LTR ERVL 256 543 -15 2753 7 0 0 chr6 9636295 9636595 -179642959 + AluYa5 SINE Alu 1 300 -11 308 282 219 25 chr6 9636838 9637016 -179642538 - MIR SINE MIR -6 256 45 1557 167 44 20 chr6 9638329 9638623 -179640931 + AluJb SINE Alu 1 301 -11 378 219 106 53 chr6 9639096 9639247 -179640307 + MER5A DNA MER1_type 1 159 -30 7264 112 145 37 chr6 9639442 9640965 -179638589 - pTR5 LTR ERV1 -10 2428 742 704 127 0 18 chr6 9641789 9641899 -179637655 + FLAM_C SINE Alu 23 130 -13 1798 102 125 0 chr6 9641904 9642168 -179637386 + AluSp SINE Alu 1 297 -16 357 197 6 34 chr6 9642190 9642368 -179637186 + (TA)n Simple_repeat Simple_repeat 1 173 0 292 258 0 31 chr6 9642386 9642483 -179637071 + (TA)n Simple_repeat Simple_repeat 1 94 0 1135 245 74 12 chr6 9642848 9643045 -179636509 - MLT1A2 LTR MaLR -2 372 146 2120 112 20 7 chr6 9643045 9643349 -179636205 - AluSc SINE Alu -1 308 1 1135 245 74 12 chr6 9643349 9643477 -179636077 - MLT1A2 LTR MaLR -228 146 27 2151 120 27 0 chr6 9643482 9643782 -179635772 + AluSx SINE Alu 1 308 -4 2150 123 0 19 chr6 9646101 9646409 -179633145 + AluSq SINE Alu 1 302 -11 4567 195 27 48 chr6 9646590 9647642 -179631912 - MLT1A1-int LTR MaLR -706 1029 1 534 241 0 0 chr6 9647642 9647754 -179631800 - MLT1A1 LTR MaLR 0 365 254 364 89 0 0 chr6 9647753 9647809 -179631745 - MLT1A1 LTR MaLR -309 56 1 * 219 351 106 0 chr6 9647809 9647903 -179631651 + MIR SINE MIR 127 230 -32 * 379 324 9 0 chr6 9647902 9648013 -179631541 + L2 LINE L2 3201 3312 -1 297 75 0 0 chr6 9648860 9648900 -179630654 + (TG)n Simple_repeat Simple_repeat 1 40 0 276 200 0 0 chr6 9649563 9649628 -179629926 + GA-rich Low_complexity Low_complexity 4 68 0 189 74 0 0 chr6 9649636 9649663 -179629891 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 207 0 0 0 chr6 9650483 9650506 -179629048 + (CCA)n Simple_repeat Simple_repeat 2 24 0 333 0 0 0 chr6 9651231 9651268 -179628286 + (TG)n Simple_repeat Simple_repeat 1 37 0 373 291 97 18 chr6 9651576 9651751 -179627803 - MIR3 SINE MIR -18 190 15 288 0 0 0 chr6 9652050 9652082 -179627472 + (TG)n Simple_repeat Simple_repeat 2 33 0 1966 161 3 3 chr6 9652545 9652856 -179626698 + AluJo SINE Alu 1 311 -1 698 242 59 11 chr6 9652906 9653092 -179626462 - MIR SINE MIR -34 228 34 321 26 0 0 chr6 9653551 9653589 -179625965 + (CA)n Simple_repeat Simple_repeat 2 39 0 2151 89 0 4 chr6 9654020 9654289 -179625265 + AluSq SINE Alu 1 268 -45 236 30 30 0 chr6 9655566 9655599 -179623955 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 832 188 0 7 chr6 9655603 9655747 -179623807 - FRAM SINE Alu -30 146 4 2145 122 3 0 chr6 9655968 9656263 -179623291 + AluSx SINE Alu 1 296 -16 2140 92 4 0 chr6 9657064 9657337 -179622217 + AluSq SINE Alu 1 274 -39 1897 169 102 37 chr6 9657512 9657726 -179621828 - MSTA LTR MaLR 0 428 229 2346 94 0 13 chr6 9657726 9658033 -179621521 - AluY SINE Alu -8 303 1 1897 169 102 37 chr6 9658033 9658220 -179621334 - MSTA LTR MaLR -199 229 1 2118 101 4 0 chr6 9658290 9658568 -179620986 - AluSc SINE Alu -30 279 1 9274 147 11 36 chr6 9658570 9660158 -179619396 - MSTA-int LTR MaLR -30 1550 3 1807 162 128 8 chr6 9660160 9660512 -179619042 - MSTA LTR MaLR 0 428 35 180 0 0 0 chr6 9661973 9661993 -179617561 + (CA)n Simple_repeat Simple_repeat 2 21 0 2108 108 0 14 chr6 9662653 9662976 -179616578 + AluSx SINE Alu 1 319 0 1488 177 17 33 chr6 9664170 9664469 -179615085 + AluJo SINE Alu 11 304 -8 22 0 0 0 chr6 9666094 9666116 -179613438 + AT_rich Low_complexity Low_complexity 1 22 0 235 311 86 53 chr6 9666142 9666227 -179613327 - MIR SINE MIR -75 187 93 2222 116 0 0 chr6 9666227 9666521 -179613033 + AluSg SINE Alu 1 294 -16 235 311 86 53 chr6 9666521 9666586 -179612968 - MIR SINE MIR -169 93 32 2258 99 0 0 chr6 9668284 9668578 -179610976 - AluSg1 SINE Alu -11 298 5 186 0 88 0 chr6 9668653 9668687 -179610867 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 1943 137 0 33 chr6 9669109 9669408 -179610146 - AluJb SINE Alu -23 289 1 1141 163 153 89 chr6 9670895 9671177 -179608377 + AluJb SINE Alu 2 301 -1 2307 101 3 0 chr6 9672426 9672722 -179606832 - AluSg SINE Alu -13 297 1 1799 179 102 43 chr6 9672805 9673179 -179606375 + MSTD LTR MaLR 1 396 0 555 121 35 103 chr6 9673623 9673687 -179605867 - MSTC LTR MaLR -320 108 54 2284 113 0 0 chr6 9673687 9673980 -179605574 - AluSg SINE Alu -17 293 1 555 121 35 103 chr6 9673980 9674031 -179605523 - MSTC LTR MaLR -374 54 1 22 0 0 0 chr6 9674694 9674716 -179604838 + AT_rich Low_complexity Low_complexity 1 22 0 667 213 87 14 chr6 9676677 9676851 -179602703 + LTR33 LTR ERVL 15 178 -343 1820 87 0 0 chr6 9677508 9677738 -179601816 + AluSg/x SINE Alu 80 309 -1 188 65 0 32 chr6 9678486 9678517 -179601037 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 1171 42 0 0 chr6 9680762 9680904 -179598650 - AluY SINE Alu -8 303 162 336 24 0 0 chr6 9681076 9681117 -179598437 + (CA)n Simple_repeat Simple_repeat 2 42 0 235 348 45 9 chr6 9681598 9681710 -179597844 + L2 LINE L2 3178 3293 -20 383 300 61 118 chr6 9681727 9681990 -179597564 - MIR SINE MIR -1 261 14 1534 256 113 39 chr6 9682476 9683014 -179596540 - MLT1E LTR MaLR -4 589 12 728 257 113 55 chr6 9683194 9683505 -179596049 + MLT1H LTR MaLR 21 349 -200 332 221 3 13 chr6 9683558 9683653 -179595901 + MLT1H LTR MaLR 461 549 0 22 35 0 0 chr6 9685000 9685029 -179594525 + AT_rich Low_complexity Low_complexity 1 29 0 512 281 74 65 chr6 9685176 9685382 -179594172 + HAL1b LINE L1 96 299 -1049 2304 101 7 7 chr6 9685382 9685690 -179593864 + AluY SINE Alu 1 308 -3 512 281 74 65 chr6 9685690 9685913 -179593641 + HAL1b LINE L1 299 529 -819 25 0 0 0 chr6 9686137 9686162 -179593392 + AT_rich Low_complexity Low_complexity 1 25 0 571 168 7 121 chr6 9686169 9686318 -179593236 - FLAM_C SINE Alu -1 132 1 34 24 0 0 chr6 9686474 9686515 -179593039 + AT_rich Low_complexity Low_complexity 1 41 0 24 32 0 0 chr6 9686650 9686681 -179592873 + AT_rich Low_complexity Low_complexity 1 31 0 348 286 18 9 chr6 9686917 9687029 -179592525 + L1MC/D LINE L1 4030 4142 -2004 383 314 100 48 chr6 9687070 9687509 -179592045 + L1MC/D LINE L1 4245 4706 -1440 266 291 142 35 chr6 9687576 9687950 -179591604 + L1MC/D LINE L1 4807 5220 -926 288 294 12 0 chr6 9688059 9688144 -179591410 + (CATATA)n Simple_repeat Simple_repeat 4 89 0 399 213 13 60 chr6 9688150 9688300 -179591254 + L1MC/D LINE L1 5346 5488 -2320 587 177 0 0 chr6 9688366 9688462 -179591092 + L1MA5A LINE L1 6196 6291 -6 794 265 87 8 chr6 9688515 9688779 -179590775 - L1ME3A LINE L1 -215 5955 5671 2124 97 4 0 chr6 9689295 9689599 -179589955 - AluSc SINE Alu 0 305 1 2214 110 0 17 chr6 9690151 9690452 -179589102 + AluSc SINE Alu 1 296 -13 227 286 0 0 chr6 9690697 9690753 -179588801 + MIR SINE MIR 94 149 -113 854 127 0 0 chr6 9690756 9690874 -179588680 + FLAM_C SINE Alu 1 118 -15 252 0 0 0 chr6 9690877 9690905 -179588649 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2272 96 0 7 chr6 9690975 9691277 -179588277 - AluSc SINE Alu -9 300 1 2053 242 36 16 chr6 9692944 9693383 -179586171 + LTR40a LTR ERVL 6 458 -61 2105 234 89 29 chr6 9693383 9693942 -179585612 + MLT1E LTR MaLR 1 593 0 2053 242 36 16 chr6 9693942 9694006 -179585548 + LTR40a LTR ERVL 458 519 0 1526 256 7 44 chr6 9694019 9694425 -179585129 + HERVL40 LTR ERVL 17 407 -5123 3400 297 35 12 chr6 9694478 9695448 -179584106 + HERVL40 LTR ERVL 2892 3883 -1647 2040 217 80 59 chr6 9695448 9696195 -179583359 + L1M4b LINE L1 1024 1785 -5070 1939 114 0 22 chr6 9696197 9696469 -179583085 + AluSx SINE Alu 1 266 -46 548 86 0 25 chr6 9696469 9696550 -179583004 + Alu SINE Alu 227 305 -4 1475 272 81 44 chr6 9696553 9697274 -179582280 + L1M4b LINE L1 1789 2687 -4451 4091 240 41 52 chr6 9697304 9699112 -179580442 + L1MEc LINE L1 1734 3476 -2739 204 217 0 22 chr6 9700642 9700688 -179578866 + MIR3 SINE MIR 149 193 -15 408 348 98 5 chr6 9701842 9702066 -179577488 - MIR SINE MIR -3 259 15 1679 214 81 19 chr6 9702260 9702782 -179576772 - MLT1F LTR MaLR 0 542 3 311 266 91 32 chr6 9702866 9703058 -179576496 + MIR SINE MIR 16 216 -46 786 126 44 0 chr6 9703061 9703196 -179576358 + L1MA5A LINE L1 6154 6294 -3 25 0 0 0 chr6 9703263 9703288 -179576266 + AT_rich Low_complexity Low_complexity 1 25 0 461 314 44 40 chr6 9704892 9705118 -179574436 - MIR SINE MIR -1 261 35 3482 200 63 24 chr6 9705252 9707923 -179571631 - L1MB3 LINE L1 -310 6109 3170 6836 174 66 16 chr6 9707935 9709760 -179569794 - L1MB3 LINE L1 -3884 2500 370 24 0 0 0 chr6 9710454 9710478 -179569076 + AT_rich Low_complexity Low_complexity 1 24 0 216 246 14 14 chr6 9711990 9712059 -179567495 + (TA)n Simple_repeat Simple_repeat 1 69 0 369 0 0 0 chr6 9712210 9712251 -179567303 + (TG)n Simple_repeat Simple_repeat 1 41 0 270 116 0 0 chr6 9714662 9714705 -179564849 + (TG)n Simple_repeat Simple_repeat 1 43 0 1469 171 54 6 chr6 9714882 9715198 -179564356 + L1MB3 LINE L1 5851 6181 -2 188 247 178 14 chr6 9715517 9715590 -179563964 - MIR SINE MIR -77 185 101 351 0 0 0 chr6 9716036 9716075 -179563479 + (CA)n Simple_repeat Simple_repeat 1 39 0 327 302 12 0 chr6 9717244 9717330 -179562224 + MLT1F1 LTR MaLR 45 131 -436 2677 181 28 19 chr6 9717330 9717898 -179561656 + L1MD3 LINE L1 7409 7981 -14 319 310 98 35 chr6 9718498 9718672 -179560882 - MIR3 SINE MIR -6 202 18 1528 204 24 30 chr6 9719048 9719387 -179560167 + MLT1A1 LTR MaLR 1 337 -28 674 120 0 0 chr6 9719387 9719487 -179560067 - LTR12 LTR ERV1 0 714 615 276 228 33 22 chr6 9719489 9719581 -179559973 - LTR30 LTR ERV1 -79 643 551 696 153 29 62 chr6 9719581 9719814 -179559740 - LTR12 LTR ERV1 -427 287 1 716 268 17 6 chr6 9719875 9720054 -179559500 - MIR SINE MIR -17 245 65 195 42 0 0 chr6 9720056 9720080 -179559474 + (T)n Simple_repeat Simple_repeat 1 24 0 379 363 58 5 chr6 9720210 9720462 -179559092 + MIR SINE MIR 2 262 0 512 124 45 11 chr6 9723655 9723744 -179555810 + LTR23 LTR ERV1 304 395 -42 2174 87 14 3 chr6 9723970 9724259 -179555295 - AluY SINE Alu -19 292 1 229 282 0 0 chr6 9724723 9724808 -179554746 - L1MC4 LINE L1 -1344 6698 6614 * 262 284 0 0 chr6 9724734 9724829 -179554725 + L1MC4 LINE L1 6614 6708 -1334 2299 89 26 0 chr6 9725059 9725363 -179554191 - AluSq SINE Alu -1 312 1 570 234 90 45 chr6 9725529 9725730 -179553824 - MIR SINE MIR -34 228 19 343 301 34 27 chr6 9728697 9728843 -179550711 + MIR3 SINE MIR 60 206 -2 264 267 27 13 chr6 9731840 9731915 -179547639 - L2 LINE L2 0 3313 3238 1096 199 50 32 chr6 9732359 9732641 -179546913 + Charlie5 DNA MER1_type 7 293 -2319 5960 178 125 39 chr6 9732645 9734250 -179545304 + Charlie5 DNA MER1_type 594 2336 -276 1338 150 133 3 chr6 9734255 9734403 -179545151 + L1MA9 LINE L1 5987 6114 -198 302 67 22 0 chr6 9734403 9734448 -179545106 + (CA)n Simple_repeat Simple_repeat 1 46 0 1338 150 133 3 chr6 9734448 9734585 -179544969 + L1MA9 LINE L1 6114 6309 -3 903 165 111 15 chr6 9734590 9734851 -179544703 + Charlie5 DNA MER1_type 2328 2613 0 195 42 0 0 chr6 9734989 9735013 -179544541 + (A)n Simple_repeat Simple_repeat 1 24 0 293 321 79 60 chr6 9736537 9737070 -179542484 - L2 LINE L2 -83 3189 2647 1202 204 88 23 chr6 9737136 9737444 -179542110 + MER63B DNA MER1_type 8 335 -101 948 198 0 0 chr6 9737444 9737611 -179541943 - AluJb SINE Alu -13 299 133 293 318 61 99 chr6 9737810 9738222 -179541332 - L2 LINE L2 -5 3267 2872 1786 148 4 0 chr6 9738252 9738516 -179541038 + AluSx SINE Alu 38 302 -10 2058 154 65 8 chr6 9738519 9738901 -179540653 + L1P LINE L1 558 961 -5185 1184 99 0 0 chr6 9739005 9739180 -179540374 - AluSq SINE Alu 0 306 132 230 302 43 43 chr6 9739182 9739321 -179540233 - L2 LINE L2 -1063 2251 2113 195 291 18 0 chr6 9739554 9739609 -179539945 - L2 LINE L2 -23 3290 3235 385 258 102 60 chr6 9740400 9740567 -179538987 - MIR SINE MIR -34 228 55 2526 59 0 0 chr6 9740626 9740931 -179538623 + AluY SINE Alu 1 305 -6 189 74 0 0 chr6 9742091 9742118 -179537436 + (TGG)n Simple_repeat Simple_repeat 3 29 0 2328 70 27 10 chr6 9742727 9743028 -179536526 - AluY SINE Alu -5 306 1 443 314 47 47 chr6 9743306 9743478 -179536076 + MIR3 SINE MIR 16 187 -21 381 277 115 17 chr6 9744133 9744368 -179535186 - MIR SINE MIR -4 258 1 3600 52 0 0 chr6 9744556 9745002 -179534552 + L1PA7 LINE L1 5706 6151 -3 277 159 14 14 chr6 9745607 9745631 -179533923 + (TG)n Simple_repeat Simple_repeat 2 25 -45 1285 190 85 45 chr6 9745631 9745962 -179533592 - MER2 DNA MER2_type 0 344 1 277 159 14 14 chr6 9745962 9746006 -179533548 + (TG)n Simple_repeat Simple_repeat 24 70 0 305 268 16 24 chr6 9746083 9746206 -179533348 + (TA)n Simple_repeat Simple_repeat 1 122 0 21 36 0 0 chr6 9747433 9747461 -179532093 + AT_rich Low_complexity Low_complexity 1 28 0 508 301 64 0 chr6 9747533 9747689 -179531865 - MLT1I LTR MaLR 0 409 244 270 233 0 0 chr6 9747724 9747784 -179531770 - MER115 DNA AcHobo -632 61 2 539 310 30 22 chr6 9748398 9748617 -179530937 + MIR SINE MIR 2 198 -64 14074 124 46 14 chr6 9748617 9748898 -179530656 + Tigger1 DNA MER2_type 2 273 -2145 2205 112 0 0 chr6 9748898 9749192 -179530362 - AluSc SINE Alu 0 309 16 14074 124 46 14 chr6 9749192 9751253 -179528301 + Tigger1 DNA MER2_type 273 2417 -1 539 310 30 22 chr6 9751253 9751316 -179528238 + MIR SINE MIR 198 259 -3 345 335 99 0 chr6 9751341 9751502 -179528052 + L3 LINE CR1 1266 1442 -135 1046 232 70 29 chr6 9751941 9752256 -179527298 + MER2 DNA MER2_type 15 342 -3 24 53 0 0 chr6 9752289 9752327 -179527227 + AT_rich Low_complexity Low_complexity 1 38 0 1362 184 62 0 chr6 9753214 9753534 -179526020 - L1MA9 LINE L1 -10 6302 5963 188 254 34 17 chr6 9753562 9753621 -179525933 - MIR SINE MIR -19 243 184 431 341 30 12 chr6 9753660 9753827 -179525727 - MIR SINE MIR -76 186 17 1056 140 0 48 chr6 9753971 9754157 -179525397 - AluSg/x SINE Alu -5 305 129 810 204 43 69 chr6 9755114 9755345 -179524209 - MIR SINE MIR -36 226 2 26 0 0 0 chr6 9755628 9755654 -179523900 + AT_rich Low_complexity Low_complexity 1 26 0 450 143 13 0 chr6 9755932 9756009 -179523545 + MER116 DNA Mariner 3 80 0 1289 147 14 0 chr6 9756216 9756434 -179523120 - L1PA15 LINE L1 -7 6158 5938 23 54 0 0 chr6 9757410 9757447 -179522107 + AT_rich Low_complexity Low_complexity 1 37 0 716 148 16 0 chr6 9757600 9757728 -179521826 - L1P4 LINE L1 -1380 4766 4637 * 3566 128 8 3 chr6 9757724 9758673 -179520881 + L1P4 LINE L1 4795 5746 -415 263 246 108 0 chr6 9758684 9758749 -179520805 - MIR SINE MIR -72 190 119 1030 58 0 0 chr6 9758791 9758912 -179520642 - AluY SINE Alu -17 294 174 32 43 0 0 chr6 9758975 9759021 -179520533 + AT_rich Low_complexity Low_complexity 1 46 0 807 136 7 57 chr6 9759021 9759161 -179520393 - FLAM_C SINE Alu 0 133 1 954 199 39 0 chr6 9759359 9759540 -179520014 - MER5A DNA MER1_type -1 188 1 304 150 44 35 chr6 9760364 9760477 -179519077 + (TA)n Simple_repeat Simple_repeat 2 115 0 21 0 0 0 chr6 9763916 9763937 -179515617 + AT_rich Low_complexity Low_complexity 1 21 0 1410 187 33 0 chr6 9764346 9764651 -179514903 - MER33 DNA MER1_type 0 324 10 1066 157 51 37 chr6 9764777 9764993 -179514561 + MER20 DNA MER1_type 1 219 0 2346 137 11 3 chr6 9765124 9765483 -179514071 + THE1B LTR MaLR 3 364 0 346 202 202 0 chr6 9766114 9766198 -179513356 - MLT1E LTR MaLR 0 593 493 * 1773 191 26 37 chr6 9766190 9766262 -179513292 - MLT2B3 LTR ERVL -207 347 276 2407 95 0 0 chr6 9766262 9766567 -179512987 - AluSg SINE Alu -5 305 1 1773 191 26 37 chr6 9766567 9766845 -179512709 - MLT2B3 LTR ERVL -278 276 1 360 0 0 0 chr6 9767471 9767511 -179512043 + (TG)n Simple_repeat Simple_repeat 2 41 0 204 263 11 32 chr6 9767668 9767763 -179511791 + T-rich Low_complexity Low_complexity 3 95 0 231 183 50 33 chr6 9768279 9768339 -179511215 + L1MC4a LINE L1 6078 6138 -1670 226 143 24 0 chr6 9768657 9768699 -179510855 + CT-rich Low_complexity Low_complexity 2 44 0 456 19 0 0 chr6 9768707 9768760 -179510794 + (TG)n Simple_repeat Simple_repeat 2 54 0 2963 246 70 11 chr6 9768981 9770223 -179509331 - L1ME1 LINE L1 0 6166 4845 216 0 0 0 chr6 9770234 9770258 -179509296 + (T)n Simple_repeat Simple_repeat 1 24 0 601 183 117 103 chr6 9770689 9770902 -179508652 + MER20 DNA MER1_type 4 219 0 39 0 0 0 chr6 9771288 9771327 -179508227 + AT_rich Low_complexity Low_complexity 1 39 0 465 162 0 0 chr6 9771377 9771451 -179508103 - AluS SINE Alu -235 74 1 537 211 0 0 chr6 9771565 9771674 -179507880 - L1PB4 LINE L1 -8 6148 6040 228 240 0 0 chr6 9773164 9773264 -179506290 + (TG)n Simple_repeat Simple_repeat 1 100 0 202 273 15 0 chr6 9773282 9773348 -179506206 + (TG)n Simple_repeat Simple_repeat 2 68 0 183 283 0 0 chr6 9773506 9773552 -179506002 - L2 LINE L2 -3 3269 3224 405 0 0 0 chr6 9774642 9774687 -179504867 + (CA)n Simple_repeat Simple_repeat 2 46 0 1955 105 0 0 chr6 9774720 9774977 -179504577 + AluSx SINE Alu 55 311 -1 480 287 73 10 chr6 9775565 9775854 -179503700 + L1MEd LINE L1 1330 1636 -4894 424 364 46 8 chr6 9776011 9776250 -179503304 + L1MEd LINE L1 1895 2142 -4579 315 297 67 5 chr6 9776521 9776716 -179502838 + L1MEd LINE L1 2444 2650 -3890 * 431 282 31 53 chr6 9776702 9776929 -179502625 + L1ME3A LINE L1 5646 5867 -303 820 209 74 0 chr6 9777079 9777242 -179502312 + MER45A DNA AcHobo 4 178 0 214 132 0 26 chr6 9778810 9778848 -179500706 - MIR SINE MIR -6 256 220 289 305 92 29 chr6 9779460 9779634 -179499920 + MIR SINE MIR 77 261 -1 210 143 0 0 chr6 9779870 9779905 -179499649 + (T)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr6 9780829 9780852 -179498702 + AT_rich Low_complexity Low_complexity 1 23 0 361 303 59 16 chr6 9781103 9781247 -179498307 + MIR SINE MIR 15 166 -42 194 57 57 0 chr6 9782781 9782816 -179496738 + T-rich Low_complexity Low_complexity 4 40 0 386 266 143 26 chr6 9784279 9784433 -179495121 - MER5B DNA MER1_type -6 172 1 816 204 68 0 chr6 9784500 9784676 -179494878 - MER5A DNA MER1_type 0 189 2 254 286 0 13 chr6 9784727 9784804 -179494750 + MER21B LTR ERV1 12 87 -776 1172 186 4 59 chr6 9784864 9785100 -179494454 + MER21B LTR ERV1 102 324 -539 * 1374 256 47 70 chr6 9785097 9785629 -179493925 + MER21B LTR ERV1 287 806 -57 408 243 223 14 chr6 9785794 9785942 -179493612 + MER5A DNA MER1_type 4 182 -7 590 243 171 0 chr6 9785949 9786101 -179493453 + MER5B DNA MER1_type 1 178 0 344 196 98 23 chr6 9786716 9786849 -179492705 + L1MC4 LINE L1 7898 8040 -2 1685 187 3 20 chr6 9787488 9787793 -179491761 + AluJb SINE Alu 3 302 -10 733 128 18 0 chr6 9787904 9788013 -179491541 + AluSg SINE Alu 30 140 -170 42480 32 25 2 chr6 9788013 9794018 -179485536 + L1PA2 LINE L1 6 6148 -7 1335 101 0 0 chr6 9794018 9794196 -179485358 + AluSg SINE Alu 119 296 -14 249 246 0 0 chr6 9794636 9794697 -179484857 + CT-rich Low_complexity Low_complexity 2 62 0 805 271 248 34 chr6 9794782 9795010 -179484544 - L2 LINE L2 -1 3312 3134 201 39 0 0 chr6 9795010 9795036 -179484518 + (TG)n Simple_repeat Simple_repeat 2 27 0 805 271 248 34 chr6 9795036 9795499 -179484055 - L2 LINE L2 -179 3134 2450 204 329 35 35 chr6 9795501 9795644 -179483910 - L3b LINE CR1 -339 1244 1102 1209 292 64 7 chr6 9795904 9796359 -179483195 + L1ME LINE L1 5266 5746 -424 38 0 0 0 chr6 9796361 9796399 -179483155 + AT_rich Low_complexity Low_complexity 1 38 0 6611 48 7 0 chr6 9796399 9797220 -179482334 - L1PA5 LINE L1 -7 6147 5321 2055 105 3 33 chr6 9798376 9798681 -179480873 - AluSg SINE Alu -14 296 1 666 290 59 11 chr6 9798989 9799175 -179480379 - MIR3 SINE MIR -1 207 13 367 189 0 0 chr6 9799187 9799261 -179480293 + MER5A DNA MER1_type 1 74 -115 2025 141 92 8 chr6 9800088 9800479 -179479075 + MSTA LTR MaLR 1 424 -4 603 258 59 11 chr6 9800491 9800677 -179478877 + MIR SINE MIR 17 211 -51 329 312 142 35 chr6 9800829 9800970 -179478584 + L2 LINE L2 3116 3271 -1 490 280 110 6 chr6 9802250 9802432 -179477122 + Charlie2 DNA MER1_type 69 269 -2593 1319 213 94 70 chr6 9802552 9802642 -179476912 + Charlie2 DNA MER1_type 2136 2222 -640 357 240 85 8 chr6 9802642 9802771 -179476783 + MER91C DNA MER1_type 1 139 -1 1319 213 94 70 chr6 9802771 9803383 -179476171 + Charlie2 DNA MER1_type 2222 2855 -7 411 261 46 76 chr6 9803705 9803981 -179475573 + HAL1 LINE L1 843 1103 -1404 2040 130 13 3 chr6 9803981 9804282 -179475272 + AluSx SINE Alu 1 304 -8 411 261 46 76 chr6 9804282 9804441 -179475113 + HAL1 LINE L1 1103 1265 -1242 2551 151 15 6 chr6 9804641 9805110 -179474444 + L1PA16 LINE L1 5674 6146 -20 6308 160 21 5 chr6 9805118 9806473 -179473081 + L1P4 LINE L1 4106 5474 -694 1656 57 31 0 chr6 9806505 9806733 -179472821 + L1PA13 LINE L1 5927 6161 -2 2007 90 68 0 chr6 9806838 9806957 -179472597 + AluSc SINE Alu 1 110 -199 216 0 0 0 chr6 9806957 9806981 -179472573 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2007 90 68 0 chr6 9806981 9807140 -179472414 + AluSc SINE Alu 110 298 -11 1711 168 45 17 chr6 9807839 9808197 -179471357 - MLT1C LTR MaLR -5 462 95 329 250 69 17 chr6 9808231 9808379 -179471175 + MLT1E3 LTR MaLR 80 217 -409 315 224 47 0 chr6 9808385 9808470 -179471084 - MLT1C LTR MaLR -376 91 3 29 90 0 0 chr6 9808500 9808578 -179470976 + AT_rich Low_complexity Low_complexity 1 78 0 1177 237 116 39 chr6 9808865 9809358 -179470196 - L1ME1 LINE L1 -12 6965 6435 947 204 13 4 chr6 9809363 9809588 -179469966 - L1ME1 LINE L1 -743 6214 5988 1260 264 74 42 chr6 9809690 9810191 -179469363 + MLT1E3 LTR MaLR 84 600 -24 345 212 112 39 chr6 9810191 9810370 -179469184 - L1ME1 LINE L1 -986 5971 5780 28 79 0 0 chr6 9810372 9810435 -179469119 + AT_rich Low_complexity Low_complexity 1 63 0 897 243 13 75 chr6 9810442 9810817 -179468737 - L1ME1 LINE L1 -5296 1563 1212 420 263 66 116 chr6 9810871 9811130 -179468424 - L1ME1 LINE L1 -5656 1199 954 312 313 28 85 chr6 9811387 9811598 -179467956 - L1ME1 LINE L1 -6569 290 92 2193 122 0 6 chr6 9811689 9812000 -179467554 - AluSx SINE Alu -3 309 1 1781 289 122 33 chr6 9812010 9813096 -179466458 - L1MCc LINE L1 -4770 2171 1183 2223 110 0 3 chr6 9813096 9813387 -179466167 - AluSc SINE Alu -19 290 1 1781 289 122 33 chr6 9813387 9813864 -179465690 - L1MCc LINE L1 -5758 1183 750 956 209 80 0 chr6 9813864 9814065 -179465489 - MER20 DNA MER1_type 0 219 3 1781 289 122 33 chr6 9814065 9814479 -179465075 - L1MCc LINE L1 -6191 750 11 2482 69 0 0 chr6 9814579 9814882 -179464672 - AluY SINE Alu -8 303 1 328 235 0 0 chr6 9815121 9815189 -179464365 - Charlie8 DNA MER1_type -1000 1417 1350 287 302 86 26 chr6 9815392 9815508 -179464046 - L2 LINE L2 -1 3312 3190 621 276 66 29 chr6 9815530 9815773 -179463781 - Charlie8 DNA MER1_type -2143 274 23 1881 121 44 24 chr6 9816330 9816628 -179462926 - AluSx SINE Alu -8 304 1 3910 152 91 26 chr6 9816743 9817575 -179461979 - pTR5 LTR ERV1 0 2438 1661 192 77 0 0 chr6 9817575 9817601 -179461953 + (CGGGGG)n Simple_repeat Simple_repeat 2 27 0 3910 152 91 26 chr6 9817601 9818071 -179461483 - pTR5 LTR ERV1 -777 1661 743 1885 151 10 3 chr6 9819665 9819957 -179459597 - AluJo SINE Alu -8 304 11 23 0 0 0 chr6 9820197 9820220 -179459334 + AT_rich Low_complexity Low_complexity 1 23 0 288 0 0 0 chr6 9822211 9822243 -179457311 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 28 0 0 0 chr6 9822313 9822341 -179457213 + AT_rich Low_complexity Low_complexity 1 28 0 638 161 54 0 chr6 9823815 9823945 -179455609 + L1MB1 LINE L1 6032 6168 0 21 36 0 0 chr6 9824128 9824156 -179455398 + AT_rich Low_complexity Low_complexity 1 28 0 2402 73 0 28 chr6 9824889 9825206 -179454348 - AluY SINE Alu -3 308 1 2263 45 49 14 chr6 9825210 9825497 -179454057 - AluY SINE Alu -14 297 1 23 33 0 0 chr6 9825683 9825713 -179453841 + AT_rich Low_complexity Low_complexity 1 30 0 219 146 0 0 chr6 9828372 9828413 -179451141 + (TG)n Simple_repeat Simple_repeat 2 42 0 200 191 64 138 chr6 9828459 9828553 -179451001 - MIR SINE MIR 0 262 176 12126 158 11 14 chr6 9828660 9831700 -179447854 - L1PA13 LINE L1 -19 6144 3115 509 264 117 78 chr6 9831700 9831977 -179447577 - MLT1J LTR MaLR -161 350 55 2161 99 3 0 chr6 9831977 9832282 -179447272 - AluSq SINE Alu 0 306 1 509 264 117 78 chr6 9832282 9832336 -179447218 - MLT1J LTR MaLR -456 55 5 287 340 80 13 chr6 9832339 9832489 -179447065 - MIR SINE MIR -98 164 5 1614 168 0 22 chr6 9833278 9833552 -179446002 + AluJo SINE Alu 37 304 -8 622 214 66 6 chr6 9833627 9833809 -179445745 - MER33 DNA MER1_type -98 226 34 1604 163 52 14 chr6 9834806 9835095 -179444459 - AluSq SINE Alu -13 300 1 5489 94 1 30 chr6 9835408 9836265 -179443289 - L1PA14 LINE L1 -4 6157 5326 358 122 0 122 chr6 9836599 9836673 -179442881 - FLAM SINE Alu -4 129 65 2283 108 0 0 chr6 9836792 9837097 -179442457 - AluSq SINE Alu -8 305 1 254 238 0 16 chr6 9837404 9837467 -179442087 - LTR67 LTR ERVL 0 557 496 282 348 0 11 chr6 9838097 9838189 -179441365 - L2 LINE L2 -2 3270 3180 14610 133 18 6 chr6 9838247 9840637 -179438917 - Tigger1 DNA MER2_type 0 2418 1 1946 148 0 20 chr6 9840658 9840955 -179438599 + AluSx SINE Alu 1 291 -21 324 0 0 0 chr6 9841098 9841134 -179438420 + (TG)n Simple_repeat Simple_repeat 2 37 0 218 71 0 48 chr6 9842842 9842884 -179436670 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 1755 131 22 11 chr6 9843745 9844020 -179435534 - AluSx SINE Alu 0 312 35 21 36 0 0 chr6 9844252 9844280 -179435274 + AT_rich Low_complexity Low_complexity 1 28 0 1781 161 6 43 chr6 9845245 9845569 -179433985 + AluJo SINE Alu 1 312 0 22 0 0 0 chr6 9845700 9845722 -179433832 + AT_rich Low_complexity Low_complexity 1 22 0 2542 115 28 0 chr6 9846245 9846644 -179432910 + L1PA8 LINE L1 5760 6169 -3 602 215 169 31 chr6 9848402 9848597 -179430957 + L2 LINE L2 3092 3313 0 256 352 67 88 chr6 9848774 9849115 -179430439 + L2 LINE L2 2919 3252 -20 436 278 32 8 chr6 9849274 9849400 -179430154 - L2 LINE L2 -5 3308 3180 254 214 0 14 chr6 9850914 9850984 -179428570 + CT-rich Low_complexity Low_complexity 2 70 0 1663 170 0 52 chr6 9853048 9853354 -179426200 - AluJb SINE Alu -22 290 1 329 308 47 37 chr6 9853681 9853788 -179425766 + L2 LINE L2 3192 3299 -14 241 97 69 0 chr6 9854145 9854217 -179425337 + (TA)n Simple_repeat Simple_repeat 2 78 0 31 68 0 0 chr6 9854226 9854285 -179425269 + AT_rich Low_complexity Low_complexity 1 59 0 2198 125 7 0 chr6 9854297 9854592 -179424962 + AluSx SINE Alu 1 297 -15 1503 167 28 4 chr6 9855187 9855439 -179424115 - AluJo SINE Alu -54 258 1 297 75 0 0 chr6 9856033 9856073 -179423481 + (TG)n Simple_repeat Simple_repeat 2 41 0 444 254 111 0 chr6 9857430 9857556 -179421998 + MIR SINE MIR 63 202 -60 377 231 43 17 chr6 9857627 9857744 -179421810 - MIR SINE MIR -10 252 133 1849 179 38 57 chr6 9857904 9858450 -179421104 - MLT2C2 LTR ERVL 0 464 1 248 293 65 65 chr6 9858684 9858807 -179420747 - MIR SINE MIR -66 142 20 441 0 0 0 chr6 9860422 9860471 -179419083 + (TG)n Simple_repeat Simple_repeat 2 50 0 1241 207 113 51 chr6 9860807 9861242 -179418312 + MLT1C LTR MaLR 6 467 0 2006 138 7 0 chr6 9861397 9861686 -179417868 + AluSc SINE Alu 1 291 -18 2195 95 0 3 chr6 9861689 9862006 -179417548 + AluY SINE Alu 1 316 0 2045 116 0 0 chr6 9862153 9862478 -179417076 - AluSg SINE Alu 0 330 6 522 236 64 17 chr6 9862919 9863112 -179416442 + MIR SINE MIR 2 202 -60 207 272 0 0 chr6 9863994 9864119 -179415435 + (TG)n Simple_repeat Simple_repeat 2 126 0 1762 156 46 38 chr6 9864593 9864965 -179414589 + THE1C LTR MaLR 1 375 0 25 75 0 0 chr6 9865303 9865356 -179414198 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chr6 9866356 9866384 -179413170 + AT_rich Low_complexity Low_complexity 1 28 0 2166 104 13 26 chr6 9866407 9866715 -179412839 - AluSx SINE Alu -4 308 5 3300 150 25 30 chr6 9867590 9868197 -179411357 - MER6A DNA MER2_type -1 604 1 306 282 118 45 chr6 9868905 9869015 -179410539 + L2 LINE L2 3155 3272 0 690 256 115 0 chr6 9869222 9869413 -179410141 - MIR SINE MIR -1 261 49 2579 162 33 44 chr6 9869626 9869667 -179409887 - MLT2B2 LTR ERVL -2 513 473 360 0 0 0 chr6 9869667 9869707 -179409847 + (CA)n Simple_repeat Simple_repeat 1 40 0 2579 162 33 44 chr6 9869707 9870184 -179409370 - MLT2B2 LTR ERVL -42 473 1 21 0 0 0 chr6 9870302 9870323 -179409231 + AT_rich Low_complexity Low_complexity 1 21 0 3597 179 33 9 chr6 9870323 9871056 -179408498 - L1MA7 LINE L1 -2 6493 5744 2794 172 7 18 chr6 9871056 9871625 -179407929 - L1MA7 LINE L1 -887 5463 4901 * 40102 57 6 1 chr6 9871614 9877739 -179401815 - L1PA5 LINE L1 -1 6153 11 328 151 174 0 chr6 9877757 9877843 -179401711 - L1MA7 LINE L1 -1439 4911 4811 1103 155 0 0 chr6 9877844 9878005 -179401549 - AluJb SINE Alu -14 298 138 8579 196 21 8 chr6 9878005 9880035 -179399519 - L1MA7 LINE L1 -1531 4819 2764 1271 220 80 32 chr6 9880048 9880616 -179398938 - L1MA7 LINE L1 -4516 1765 1250 2761 174 60 44 chr6 9880617 9881300 -179398254 - LTR8A LTR ERV1 0 727 34 1015 333 33 3 chr6 9881312 9881703 -179397851 - L1MA7 LINE L1 -5026 1255 853 717 284 87 79 chr6 9882071 9882399 -179397155 - L1MA7 LINE L1 -4723 627 267 5324 73 1 3 chr6 9882399 9883094 -179396460 + L1PA6 LINE L1 5450 6143 -11 717 284 87 79 chr6 9883094 9883363 -179396191 - L1MA7 LINE L1 -5083 267 2 1161 181 178 22 chr6 9883775 9884100 -179395454 - MLT1A2 LTR MaLR 0 467 1 201 94 0 0 chr6 9884766 9884798 -179394756 + (TG)n Simple_repeat Simple_repeat 2 33 0 203 326 74 82 chr6 9885285 9885420 -179394134 - MIR SINE MIR -70 192 59 27 49 0 0 chr6 9885523 9885564 -179393990 + AT_rich Low_complexity Low_complexity 1 41 0 240 86 0 0 chr6 9885765 9885800 -179393754 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 29 28 0 0 chr6 9886070 9886106 -179393448 + AT_rich Low_complexity Low_complexity 1 36 0 387 60 0 0 chr6 9886216 9886266 -179393288 + (CA)n Simple_repeat Simple_repeat 1 50 0 232 331 8 41 chr6 9886521 9886642 -179392912 + MER5A DNA MER1_type 38 154 -35 11967 46 4 0 chr6 9886645 9888885 -179390669 - L1PA5 LINE L1 -1 6153 3894 413 239 0 0 chr6 9888917 9889005 -179390549 - MIR SINE MIR 0 262 175 4425 170 96 27 chr6 9889500 9890983 -179388571 + L1MC1 LINE L1 4750 6333 0 1166 102 0 0 chr6 9890990 9891166 -179388388 - L1PA8 LINE L1 -1115 5031 4856 6282 88 11 24 chr6 9891166 9892166 -179387388 + L1PA8 LINE L1 5064 6075 -97 2025 99 4 0 chr6 9892166 9892429 -179387125 + AluSc SINE Alu 17 280 -29 229 26 53 0 chr6 9892429 9892467 -179387087 + (CAAAC)n Simple_repeat Simple_repeat 2 41 0 6282 88 11 24 chr6 9892467 9892587 -179386967 + L1PA8 LINE L1 6073 6172 0 430 299 64 13 chr6 9892606 9892840 -179386714 + L1MC5 LINE L1 7659 7904 -57 244 298 305 8 chr6 9892944 9893075 -179386479 - MER5B DNA MER1_type -8 170 1 297 279 52 29 chr6 9893315 9893451 -179386103 - MIR SINE MIR -13 249 111 2098 141 25 19 chr6 9893539 9893900 -179385654 - THE1B LTR MaLR 0 364 2 394 309 55 24 chr6 9894693 9894858 -179384696 + MIR3 SINE MIR 33 202 -6 2158 133 10 0 chr6 9895498 9895806 -179383748 - AluSx SINE Alu -1 311 1 304 195 143 0 chr6 9895844 9895921 -179383633 - L1MCc LINE L1 -2933 4008 3921 734 184 32 21 chr6 9895921 9896111 -179383443 - LTR52 LTR ERVL 0 421 230 2030 136 169 5 chr6 9896113 9896481 -179383073 + MSTA LTR MaLR 1 428 0 6200 177 135 10 chr6 9896483 9897875 -179381679 + MSTA-int LTR MaLR 3 1568 -12 2245 134 116 10 chr6 9897886 9898273 -179381281 + MSTA LTR MaLR 1 428 0 834 244 16 29 chr6 9898273 9898505 -179381049 - LTR52 LTR ERVL -190 231 1 858 259 58 24 chr6 9898509 9898922 -179380632 - L1MCc LINE L1 -3026 3915 3489 773 301 71 38 chr6 9898945 9899687 -179379867 - L1MCc LINE L1 -4898 1525 360 291 157 0 0 chr6 9899691 9899742 -179379812 + CT-rich Low_complexity Low_complexity 2 52 0 2200 106 33 0 chr6 9899752 9900054 -179379500 - AluSq SINE Alu -1 312 1 753 140 6 19 chr6 9900064 9900221 -179379333 + CT-rich Low_complexity Low_complexity 1 155 0 438 341 62 6 chr6 9900238 9900563 -179378991 - L1MCc LINE L1 -6062 361 19 308 298 175 72 chr6 9900565 9901614 -179377940 + L2 LINE L2 1613 2770 -544 209 266 125 0 chr6 9901591 9901655 -179377899 + L2 LINE L2 3240 3311 -2 * 2035 153 0 7 chr6 9901822 9902122 -179377432 - AluSx SINE Alu -14 298 1 268 293 106 16 chr6 9902258 9902381 -179377173 + L2 LINE L2 3160 3293 -20 1672 136 21 0 chr6 9903036 9903316 -179376238 - Tigger1 DNA MER2_type -182 2236 1951 2244 90 7 3 chr6 9903318 9903617 -179375937 + AluSq SINE Alu 1 300 -13 1085 103 12 0 chr6 9903629 9903794 -179375760 + Tigger1 DNA MER2_type 1758 1924 -494 258 363 71 0 chr6 9904178 9904291 -179375263 + MIR SINE MIR 44 164 -98 2128 221 23 8 chr6 9905068 9905585 -179373969 - L1PBb LINE L1 -4040 2809 2285 817 123 0 0 chr6 9905632 9905754 -179373800 - L1MA3 LINE L1 0 6305 6184 5212 252 45 13 chr6 9905764 9907802 -179371752 - L1PBb LINE L1 -3303 3546 1336 421 217 0 0 chr6 9907797 9907880 -179371674 - L1PBb LINE L1 -5295 1554 1472 * 341 331 29 20 chr6 9907880 9908125 -179371429 - L1PBb LINE L1 -5286 1563 1317 324 368 144 53 chr6 9908577 9908876 -179370678 - L1PBb LINE L1 -5894 956 631 849 304 69 37 chr6 9908913 9909374 -179370180 - L1PBb LINE L1 -6355 495 20 539 286 8 0 chr6 9910534 9910667 -179368887 + MIR SINE MIR 124 257 -5 390 339 48 12 chr6 9911763 9911928 -179367626 + MIR SINE MIR 36 206 -56 344 288 61 49 chr6 9912026 9912189 -179367365 + L2 LINE L2 2251 2415 -899 1207 274 57 9 chr6 9912240 9912590 -179366964 + MLT1F1 LTR MaLR 201 567 0 796 295 75 17 chr6 9912590 9913045 -179366509 + MLT1F1-int LTR MaLR 1 601 -770 382 341 0 0 chr6 9913340 9913469 -179366085 + MLT1F1-int LTR MaLR 756 884 -487 446 284 28 7 chr6 9913683 9913824 -179365730 + MLT1B LTR MaLR 28 171 -371 296 244 56 11 chr6 9913966 9914056 -179365498 - MER94 DNA DNA -31 103 10 424 333 97 13 chr6 9914902 9915130 -179364424 + MIR SINE MIR 16 262 0 883 211 38 24 chr6 9915136 9915345 -179364209 + MER20 DNA MER1_type 1 212 -7 397 275 94 45 chr6 9915565 9915969 -179363585 + L1ME4a LINE L1 5622 6045 -76 24 32 0 0 chr6 9915986 9916017 -179363537 + AT_rich Low_complexity Low_complexity 1 31 0 558 0 0 0 chr6 9917683 9917745 -179361809 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 234 0 0 0 chr6 9919968 9919994 -179359560 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1508 215 33 44 chr6 9921240 9921691 -179357863 - MER39 LTR ERV1 -4 703 258 189 356 85 8 chr6 9921899 9922017 -179357537 + MIR SINE MIR 117 243 -19 3646 152 20 9 chr6 9922138 9922797 -179356757 - L1PA15 LINE L1 -5 6160 5495 4287 73 10 7 chr6 9923516 9924092 -179355462 + L1PA11 LINE L1 5591 6168 -6 297 212 61 71 chr6 9925305 9925404 -179354150 + MIR SINE MIR 99 196 -66 678 151 0 0 chr6 9925973 9926092 -179353462 - L1MA4 LINE L1 -5 6295 6177 383 266 73 51 chr6 9926333 9926707 -179352847 + L1MEd LINE L1 920 1398 -1092 310 267 30 74 chr6 9926707 9926842 -179352712 + HAL1 LINE L1 1512 1640 -867 1502 211 72 55 chr6 9926855 9927314 -179352240 - MLT1C LTR MaLR 0 467 1 254 360 82 7 chr6 9928978 9929125 -179350429 + MIR SINE MIR 8 165 -97 1378 191 4 0 chr6 9929465 9929721 -179349833 + MLT1B LTR MaLR 134 390 0 639 267 53 36 chr6 9931089 9931314 -179348240 + MIR SINE MIR 8 236 -26 284 255 124 28 chr6 9931599 9931744 -179347810 - MIR SINE MIR -12 250 92 340 274 132 0 chr6 9932071 9932177 -179347377 + L2 LINE L2 3189 3308 -5 452 332 108 66 chr6 9932824 9933411 -179346143 + L2 LINE L2 2709 3312 -1 266 297 65 43 chr6 9933458 9933596 -179345958 + MIR SINE MIR 72 212 -50 406 288 27 49 chr6 9934357 9934541 -179345013 + MER5A DNA MER1_type 3 182 -7 363 273 150 37 chr6 9935032 9935219 -179344335 + MIR SINE MIR 26 233 -29 207 258 65 32 chr6 9935685 9935747 -179343807 - MIR3 SINE MIR -10 198 135 318 26 0 0 chr6 9935941 9935980 -179343574 + (TC)n Simple_repeat Simple_repeat 2 40 0 * 342 61 0 0 chr6 9935979 9936028 -179343526 + (TG)n Simple_repeat Simple_repeat 2 50 0 1014 293 51 15 chr6 9936473 9937155 -179342399 - L1MCc LINE L1 -4939 2183 1263 230 293 0 13 chr6 9937181 9937256 -179342298 - L1MCc LINE L1 -5220 1203 1130 751 125 8 0 chr6 9938184 9938304 -179341250 - L1PA14 LINE L1 0 6161 6041 1816 106 4 8 chr6 9941263 9941509 -179338045 + AluSx SINE Alu 55 299 -13 197 176 0 20 chr6 9941701 9941752 -179337802 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 485 276 8 16 chr6 9942006 9942133 -179337421 - MER5B DNA MER1_type -16 162 37 2358 87 0 10 chr6 9942321 9942621 -179336933 + AluSq SINE Alu 1 297 -16 42587 35 23 1 chr6 9943285 9949312 -179330242 - L1PA3 LINE L1 0 6155 1 24 0 0 0 chr6 9950015 9950039 -179329515 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 9950832 9950854 -179328700 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr6 9951168 9951207 -179328347 + AT_rich Low_complexity Low_complexity 1 39 0 606 302 74 46 chr6 9951431 9952103 -179327451 - L1ME3A LINE L1 -206 5964 5274 207 0 0 0 chr6 9952109 9952132 -179327422 + (TTG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr6 9952255 9952276 -179327278 + AT_rich Low_complexity Low_complexity 1 21 0 344 291 54 49 chr6 9952479 9952682 -179326872 - L1ME3A LINE L1 -2831 3315 3112 306 276 104 27 chr6 9952727 9952948 -179326606 - L1ME3A LINE L1 -3619 2527 2290 1313 166 4 7 chr6 9953053 9953324 -179326230 + L1MA4 LINE L1 6026 6295 -5 21 36 0 0 chr6 9953451 9953479 -179326075 + AT_rich Low_complexity Low_complexity 1 28 0 261 267 10 30 chr6 9953876 9953977 -179325577 - HAL1 LINE L1 -856 1651 1553 279 325 86 75 chr6 9954069 9954465 -179325089 - L2 LINE L2 -610 2704 2301 2161 123 0 7 chr6 9954465 9954773 -179324781 + AluSx SINE Alu 1 306 -6 279 325 86 75 chr6 9954773 9954819 -179324735 - L2 LINE L2 -1013 2301 2257 2435 59 3 13 chr6 9954899 9955206 -179324348 - AluY SINE Alu -3 308 5 2344 90 3 0 chr6 9955965 9956265 -179323289 - AluSp SINE Alu -12 301 1 22 0 0 0 chr6 9956304 9956326 -179323228 + AT_rich Low_complexity Low_complexity 1 22 0 1656 150 12 0 chr6 9956458 9956711 -179322843 + AluJb SINE Alu 34 289 -23 1903 168 21 0 chr6 9958987 9959314 -179320240 + MER44D DNA MER2_type 1 604 -5 258 359 157 31 chr6 9959612 9960314 -179319240 - L2 LINE L2 -546 2768 1979 306 284 269 0 chr6 9960344 9960478 -179319076 - MER5A DNA MER1_type -9 180 11 200 259 36 107 chr6 9960610 9960722 -179318832 + L2 LINE L2 3210 3313 0 2588 214 67 62 chr6 9960807 9962118 -179317436 - L1ME1 LINE L1 -18 6148 4825 403 178 20 10 chr6 9963082 9963183 -179316371 + CT-rich Low_complexity Low_complexity 2 103 0 2304 83 3 0 chr6 9963284 9963572 -179315982 - AluSc SINE Alu -16 293 5 1023 119 11 6 chr6 9964664 9964841 -179314713 + (TTC)n Simple_repeat Simple_repeat 3 180 0 352 156 13 13 chr6 9964843 9964920 -179314634 + CT-rich Low_complexity Low_complexity 1 77 0 509 125 0 0 chr6 9966336 9966416 -179313138 + MADE1 DNA Mariner 1 80 0 7494 231 52 68 chr6 9966941 9969135 -179310419 - L1MDb LINE L1 -897 5509 3254 1002 66 0 0 chr6 9969135 9969256 -179310298 + AluSc SINE Alu 185 305 -4 7494 231 52 68 chr6 9969256 9969983 -179309571 - L1MDb LINE L1 -3152 3254 2517 1713 241 100 13 chr6 9969999 9970629 -179308925 - L1MDb LINE L1 -4044 2362 1678 1101 279 109 22 chr6 9970606 9970766 -179308788 - L1MDb LINE L1 -5619 790 645 * 1494 71 0 15 chr6 9970766 9970964 -179308590 + L1PA7 LINE L1 5960 6154 0 1101 279 109 22 chr6 9970964 9971406 -179308148 - L1MDb LINE L1 -5764 645 24 1433 135 145 3 chr6 9971521 9971803 -179307751 - L1MB3 LINE L1 -6 6177 5856 196 311 136 0 chr6 9972188 9972291 -179307263 + MIR SINE MIR 35 151 -111 299 173 16 81 chr6 9972362 9972547 -179307007 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 2023 69 0 4 chr6 9973135 9973380 -179306174 + AluY SINE Alu 1 244 -67 21 0 0 0 chr6 9973466 9973487 -179306067 + AT_rich Low_complexity Low_complexity 1 21 0 240 331 67 11 chr6 9976036 9976214 -179303340 + L1ME2 LINE L1 7 194 -6202 2290 268 72 54 chr6 9976826 9978699 -179300855 + L1ME2 LINE L1 656 2564 -3651 1618 245 71 9 chr6 9978720 9979075 -179300479 + L1ME2 LINE L1 5681 6082 -151 288 0 0 0 chr6 9979075 9979107 -179300447 + (TG)n Simple_repeat Simple_repeat 2 33 0 1618 245 71 9 chr6 9979107 9979259 -179300295 + L1ME2 LINE L1 6082 6223 -10 36 23 0 0 chr6 9979748 9979791 -179299763 + AT_rich Low_complexity Low_complexity 1 43 0 333 0 0 0 chr6 9979878 9979915 -179299639 + (TG)n Simple_repeat Simple_repeat 2 38 0 234 191 16 32 chr6 9980912 9980975 -179298579 + L1M3 LINE L1 5492 5553 -627 264 247 152 11 chr6 9981111 9981289 -179298265 + L1ME4a LINE L1 5742 5944 -177 316 322 125 13 chr6 9981596 9981712 -179297842 + MIR SINE MIR 48 186 -76 396 0 0 0 chr6 9981712 9981756 -179297798 + (TG)n Simple_repeat Simple_repeat 1 44 0 316 322 125 13 chr6 9981756 9981791 -179297763 + MIR SINE MIR 186 216 -46 29 84 0 0 chr6 9981880 9981951 -179297603 + AT_rich Low_complexity Low_complexity 1 71 0 47 101 0 13 chr6 9981986 9982213 -179297341 + AT_rich Low_complexity Low_complexity 1 224 0 2016 120 17 13 chr6 9982639 9982939 -179296615 + AluSx SINE Alu 1 301 -11 783 150 42 163 chr6 9983380 9983620 -179295934 + MER20 DNA MER1_type 9 219 0 561 302 16 81 chr6 9985152 9985410 -179294144 - MIR SINE MIR -12 250 10 2156 71 46 0 chr6 9986212 9986493 -179293061 + AluY SINE Alu 1 294 -17 262 169 79 0 chr6 9987786 9987875 -179291679 + (TA)n Simple_repeat Simple_repeat 2 97 0 1871 171 83 3 chr6 9989796 9990158 -179289396 - MSTB LTR MaLR 0 426 36 227 200 36 18 chr6 9990648 9990703 -179288851 + MLT1K LTR MaLR 533 588 0 21 57 0 0 chr6 9991190 9991225 -179288329 + AT_rich Low_complexity Low_complexity 1 35 0 4174 130 49 49 chr6 9991695 9992448 -179287106 + LTR1 LTR ERV1 32 784 -1 2350 124 11 21 chr6 9993165 9993544 -179286010 + THE1C LTR MaLR 1 375 0 979 229 9 5 chr6 9993892 9994115 -179285439 + MER58A DNA MER1_type 1 224 0 3073 169 29 2 chr6 9994190 9994775 -179284779 - L1MA8 LINE L1 0 6291 5691 353 227 30 21 chr6 9994849 9994961 -179284593 - MLT1G3 LTR MaLR -8 522 432 * 466 204 134 14 chr6 9994956 9995098 -179284456 - MLT1G1 LTR MaLR -436 159 1 369 329 72 46 chr6 9995180 9995417 -179284137 + MIR SINE MIR 20 262 0 560 276 128 64 chr6 9995511 9995916 -179283638 + L2 LINE L2 2883 3313 0 336 335 30 37 chr6 9997156 9997320 -179282234 + MLT1K LTR MaLR 186 348 -240 459 0 0 0 chr6 9997527 9997578 -179281976 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 460 342 6 6 chr6 9998010 9998168 -179281386 - MIR3 SINE MIR -1 207 50 293 234 122 37 chr6 9999276 9999383 -179280171 - MIR SINE MIR -71 191 76 558 296 73 49 chr6 9999718 9999965 -179279589 + MIR SINE MIR 10 262 0 1873 160 0 3 chr6 9999986 10000274 -179279280 - AluJo SINE Alu -25 287 1 1673 212 70 79 chr6 10000475 10001132 -179278422 - MLT1E1 LTR MaLR 0 654 4 278 273 125 76 chr6 10001940 10002170 -179277384 + MLT1L LTR MaLR 111 417 -198 264 250 54 11 chr6 10002227 10002319 -179277235 + MLT1L LTR MaLR 520 615 0 249 365 66 0 chr6 10003519 10003656 -179275898 - L3 LINE CR1 -89 1488 1343 207 243 0 29 chr6 10003709 10003779 -179275775 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 429 280 108 77 chr6 10004058 10004437 -179275117 + MLT1I LTR MaLR 18 408 -1 2290 87 0 0 chr6 10004745 10005034 -179274520 + AluSg SINE Alu 1 289 -21 2213 117 0 7 chr6 10006065 10006364 -179273190 - AluSx SINE Alu -15 297 1 26 0 0 0 chr6 10006734 10006760 -179272794 + AT_rich Low_complexity Low_complexity 1 26 0 2973 195 22 36 chr6 10006821 10007126 -179272428 - L1MB2 LINE L1 -76 6095 5787 429 20 0 0 chr6 10007126 10007176 -179272378 + (TA)n Simple_repeat Simple_repeat 1 50 0 2973 195 22 36 chr6 10007176 10007566 -179271988 - L1MB2 LINE L1 -384 5787 5410 224 255 31 0 chr6 10008620 10008718 -179270836 + (TA)n Simple_repeat Simple_repeat 1 101 0 2494 50 0 13 chr6 10009141 10009439 -179270115 + AluY SINE Alu 1 294 -17 319 299 70 61 chr6 10011212 10011426 -179268128 - MIR SINE MIR -40 222 7 880 234 11 0 chr6 10011662 10011846 -179267708 - MER5A DNA MER1_type -3 186 1 208 300 33 0 chr6 10012623 10012683 -179266871 - MER5A DNA MER1_type 0 189 128 1225 120 0 165 chr6 10012685 10012976 -179266578 + L1PB4 LINE L1 5912 6154 -2 303 301 75 11 chr6 10012993 10013086 -179266468 - MER5A DNA MER1_type -82 107 9 245 301 272 7 chr6 10014264 10014400 -179265154 + MER5A DNA MER1_type 18 189 0 1004 212 5 0 chr6 10014411 10014595 -179264959 + MER5A DNA MER1_type 4 188 -1 646 186 17 0 chr6 10015206 10015324 -179264230 - MSTD LTR MaLR -3 393 274 2156 148 18 3 chr6 10015342 10015680 -179263874 + LTR3b LTR ERVK 158 500 0 836 179 193 14 chr6 10015684 10015907 -179263647 - MSTD LTR MaLR -128 268 6 518 281 7 7 chr6 10015937 10016072 -179263482 + MIR SINE MIR 16 150 -58 31 0 0 0 chr6 10016171 10016202 -179263352 + AT_rich Low_complexity Low_complexity 1 31 0 315 0 0 0 chr6 10016332 10016367 -179263187 + (CA)n Simple_repeat Simple_repeat 2 36 0 540 298 72 93 chr6 10016408 10016740 -179262814 + L2 LINE L2 2984 3308 -5 2446 176 4 13 chr6 10018644 10019110 -179260444 - L1MB2 LINE L1 -948 5198 4737 2807 170 24 19 chr6 10019110 10019645 -179259909 + L1MB1 LINE L1 5617 6160 -8 349 353 75 44 chr6 10019733 10020177 -179259377 - L2 LINE L2 -212 3060 2597 9978 117 7 2 chr6 10020231 10021730 -179257824 - L1PA8A LINE L1 -1197 4949 3443 6324 75 11 6 chr6 10021730 10022892 -179256662 + L1PA8A LINE L1 4962 6128 -3 481 300 81 32 chr6 10025289 10025855 -179253699 - L1ME4a LINE L1 -3 6118 5525 1965 104 56 21 chr6 10026017 10026305 -179253249 - AluSx SINE Alu -14 298 1 23 68 0 0 chr6 10026455 10026499 -179253055 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr6 10027268 10027297 -179252257 + AT_rich Low_complexity Low_complexity 1 29 0 28717 29 0 0 chr6 10027938 10032157 -179247397 - L1PA3 LINE L1 0 6155 1937 204 380 10 0 chr6 10032775 10032875 -179246679 + L2 LINE L2 3208 3308 -5 4357 193 19 15 chr6 10033934 10034218 -179245336 + L1MB2 LINE L1 5066 5347 -824 4981 148 77 39 chr6 10034218 10035250 -179244304 + MER11C LTR ERVK 1 1071 0 4357 193 19 15 chr6 10035250 10036022 -179243532 + L1MB2 LINE L1 5347 6132 -39 377 305 170 5 chr6 10036116 10036339 -179243215 + MIR SINE MIR 3 262 0 199 358 32 0 chr6 10036557 10036652 -179242902 + L2 LINE L2 2338 2435 -879 261 182 0 0 chr6 10036660 10036715 -179242839 + GA-rich Low_complexity Low_complexity 2 56 0 1928 192 78 116 chr6 10036735 10037491 -179242063 + LTR8A LTR ERV1 1 727 0 2162 104 0 4 chr6 10038918 10039222 -179240332 - AluSg SINE Alu 0 303 1 288 0 0 0 chr6 10039256 10039288 -179240266 + (CA)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chr6 10039751 10039774 -179239780 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr6 10039920 10039942 -179239612 + (TAA)n Simple_repeat Simple_repeat 3 24 0 2178 129 0 0 chr6 10040651 10040961 -179238593 + AluSg SINE Alu 1 310 0 184 337 174 0 chr6 10040973 10041071 -179238483 + MIR SINE MIR 26 140 -122 27 29 0 0 chr6 10041632 10041666 -179237888 + AT_rich Low_complexity Low_complexity 1 34 0 1679 82 13 0 chr6 10042011 10042244 -179237310 - L1MA1 LINE L1 -342 5960 5725 40 0 0 0 chr6 10042260 10042300 -179237254 + AT_rich Low_complexity Low_complexity 1 40 0 5383 86 97 1 chr6 10046832 10047584 -179231970 - LTR12 LTR ERV1 -2 824 1 180 176 0 0 chr6 10048692 10048726 -179230828 + (TA)n Simple_repeat Simple_repeat 2 35 0 2198 113 0 0 chr6 10049459 10049752 -179229802 - AluSx SINE Alu -19 293 1 437 260 73 0 chr6 10050352 10050475 -179229079 - MIR SINE MIR -31 231 100 2173 113 26 47 chr6 10050764 10051145 -179228409 - THE1C LTR MaLR 0 375 3 2268 103 3 0 chr6 10051409 10051701 -179227853 + AluSq SINE Alu 3 295 -18 213 65 0 0 chr6 10052072 10052103 -179227451 + (A)n Simple_repeat Simple_repeat 1 31 0 425 256 22 7 chr6 10052617 10052754 -179226800 - L1ME4a LINE L1 -211 5910 5772 340 283 22 36 chr6 10052821 10052959 -179226595 + HAL1b LINE L1 353 488 -860 344 296 92 0 chr6 10053341 10053483 -179226071 + L1ME LINE L1 5527 5681 -440 21 0 0 0 chr6 10054206 10054227 -179225327 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr6 10055599 10055642 -179223912 + AT_rich Low_complexity Low_complexity 1 43 0 532 207 7 15 chr6 10056405 10056540 -179223014 - L1MB7 LINE L1 -12 6172 6039 23 0 0 0 chr6 10061622 10061645 -179217909 + AT_rich Low_complexity Low_complexity 1 23 0 2106 139 90 55 chr6 10062049 10062518 -179217036 + LTR12 LTR ERV1 1 485 -229 198 352 108 17 chr6 10062544 10062720 -179216834 - MIR SINE MIR -50 212 21 28 29 0 0 chr6 10062838 10062873 -179216681 + AT_rich Low_complexity Low_complexity 1 35 0 984 162 0 0 chr6 10062908 10063056 -179216498 + AluSg/x SINE Alu 136 283 -29 21 36 0 0 chr6 10063057 10063085 -179216469 + AT_rich Low_complexity Low_complexity 1 28 0 225 180 0 0 chr6 10064519 10064569 -179214985 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 310 352 11 0 chr6 10065014 10065102 -179214452 - MIR SINE MIR -154 108 20 663 263 132 4 chr6 10065137 10065388 -179214166 + L1MB5 LINE L1 5621 5903 -271 2097 199 77 66 chr6 10065388 10066021 -179213533 + MLT1E1 LTR MaLR 1 640 -14 704 282 81 15 chr6 10066322 10066829 -179212725 + L1ME LINE L1 422 971 -5099 524 279 122 65 chr6 10067135 10067536 -179212018 - L2 LINE L2 -811 2503 2080 267 193 48 36 chr6 10069367 10069450 -179210104 - L1ME4a LINE L1 -20 6101 6018 670 277 71 20 chr6 10069487 10069740 -179209814 - L2 LINE L2 -969 2345 2080 475 310 94 42 chr6 10069920 10070401 -179209153 - L1ME4a LINE L1 -261 5860 5355 290 232 21 0 chr6 10070837 10070932 -179208622 + (CATA)n Simple_repeat Simple_repeat 4 100 0 405 252 60 33 chr6 10071110 10071261 -179208293 + L2 LINE L2 2148 2302 -1012 533 305 133 0 chr6 10072656 10072882 -179206672 + MIR SINE MIR 7 262 0 239 347 0 0 chr6 10074202 10074274 -179205280 - L2 LINE L2 -7 3306 3235 12952 207 8 5 chr6 10076057 10079022 -179200532 + L1PA15 LINE L1 2283 5256 -890 3057 124 47 0 chr6 10079151 10079665 -179199889 + L1PA15 LINE L1 5441 5978 -187 644 223 129 62 chr6 10079695 10079919 -179199635 - MLT2B2 LTR ERVL -79 436 198 236 231 44 33 chr6 10082600 10082691 -179196863 - MLT1H LTR MaLR -50 499 408 2463 58 0 10 chr6 10083637 10083932 -179195622 - AluY SINE Alu -19 292 1 322 162 0 73 chr6 10084031 10084099 -179195455 - MLT2E LTR ERVL -546 82 20 180 0 0 0 chr6 10084816 10084836 -179194718 + (GAGAA)n Simple_repeat Simple_repeat 4 23 0 246 116 0 0 chr6 10088650 10088693 -179190861 + (CA)n Simple_repeat Simple_repeat 2 44 0 252 256 116 0 chr6 10089407 10089493 -179190061 - MLT1L LTR MaLR -347 268 173 24 32 0 0 chr6 10089618 10089649 -179189905 + AT_rich Low_complexity Low_complexity 1 31 0 1145 232 71 25 chr6 10089721 10090074 -179189480 - MLT1A2 LTR MaLR 0 374 6 306 0 0 0 chr6 10090154 10090188 -179189366 + (TG)n Simple_repeat Simple_repeat 2 35 0 2311 111 0 16 chr6 10090189 10090505 -179189049 - AluSx SINE Alu 0 312 2 273 269 205 29 chr6 10090592 10090763 -179188791 + L2 LINE L2 2950 3150 -163 430 110 20 80 chr6 10090765 10090865 -179188689 - L1MA10 LINE L1 -13 6321 6228 789 322 73 41 chr6 10090909 10091765 -179187789 + HERVL LTR ERVL 3226 4387 -1267 4541 74 117 118 chr6 10091774 10092601 -179186953 - LTR12 LTR ERV1 0 826 1 5370 88 14 0 chr6 10092601 10093364 -179186190 - HERV9 LTR ERV1 0 8399 7626 2093 173 85 97 chr6 10093362 10094271 -179185283 - HERV9 LTR ERV1 -5156 1740 843 * 1324 107 10 0 chr6 10094267 10094464 -179185090 - HERV9 LTR ERV1 -3445 4954 4756 * 13324 108 16 10 chr6 10094463 10097497 -179182057 - HERV9 LTR ERV1 -5427 2972 1 5372 67 135 0 chr6 10097497 10098225 -179181329 - LTR12 LTR ERV1 0 826 1 425 300 125 17 chr6 10098306 10098603 -179180951 + HERVL LTR ERVL 4514 4842 -922 518 370 103 3 chr6 10099307 10099637 -179179917 + LTR16A LTR ERVL 57 419 -31 25 31 0 0 chr6 10099786 10099818 -179179736 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr6 10100137 10100166 -179179388 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 10100224 10100247 -179179307 + AT_rich Low_complexity Low_complexity 1 23 0 261 267 0 0 chr6 10100961 10101021 -179178533 - MIR SINE MIR -8 254 195 1089 196 5 5 chr6 10101030 10101229 -179178325 - AluJo SINE Alu -6 306 108 2693 182 46 14 chr6 10101339 10101928 -179177626 + L1MA9 LINE L1 5392 5999 -313 1381 181 4 0 chr6 10102296 10102544 -179177010 - MLT1C LTR MaLR 0 467 219 280 301 33 59 chr6 10102548 10102701 -179176853 + L2 LINE L2 2771 2919 -395 2548 169 16 20 chr6 10102703 10103201 -179176353 - MER44D DNA MER2_type -39 566 16 534 302 133 51 chr6 10103225 10103556 -179175998 + L2 LINE L2 2938 3295 -18 207 100 0 0 chr6 10103561 10103591 -179175963 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 198 103 0 0 chr6 10104216 10104245 -179175309 + (A)n Simple_repeat Simple_repeat 1 29 0 725 193 0 0 chr6 10104245 10104364 -179175190 - AluJo SINE Alu -193 119 1 204 40 0 0 chr6 10104470 10104495 -179175059 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 2157 112 0 0 chr6 10104502 10104778 -179174776 - AluSx SINE Alu -36 276 1 322 303 151 18 chr6 10105525 10105743 -179173811 - L2 LINE L2 -94 3219 2973 2185 98 0 38 chr6 10106386 10106702 -179172852 - AluSx SINE Alu -8 304 1 2327 123 0 0 chr6 10107211 10107521 -179172033 - AluSx SINE Alu -2 310 1 2495 57 0 0 chr6 10107566 10107865 -179171689 + AluY SINE Alu 1 299 -12 2268 86 40 7 chr6 10108189 10108490 -179171064 + AluSq SINE Alu 1 311 -2 23 54 0 0 chr6 10109166 10109203 -179170351 + AT_rich Low_complexity Low_complexity 1 37 0 407 67 0 17 chr6 10110594 10110654 -179168900 + (TTC)n Simple_repeat Simple_repeat 1 59 0 2147 109 26 0 chr6 10110867 10111170 -179168384 + AluSq SINE Alu 1 311 -2 454 193 57 0 chr6 10112222 10112310 -179167244 + MIR SINE MIR 78 170 -92 267 103 0 0 chr6 10112335 10112374 -179167180 + (TG)n Simple_repeat Simple_repeat 2 40 0 2265 110 0 0 chr6 10112555 10112856 -179166698 + AluSq SINE Alu 3 303 -10 1537 139 0 34 chr6 10113555 10113792 -179165762 + AluJb SINE Alu 63 291 -21 294 125 0 0 chr6 10116078 10116126 -179163428 + (TG)n Simple_repeat Simple_repeat 1 48 0 370 244 50 50 chr6 10117523 10117683 -179161871 + MIR SINE MIR 53 212 -50 253 271 104 21 chr6 10119613 10119709 -179159845 + MIR3 SINE MIR 9 112 -96 30 89 0 0 chr6 10121677 10121756 -179157798 + AT_rich Low_complexity Low_complexity 1 79 0 21 36 0 0 chr6 10121944 10121972 -179157582 + AT_rich Low_complexity Low_complexity 1 28 0 186 191 0 0 chr6 10122377 10122419 -179157135 + (TA)n Simple_repeat Simple_repeat 1 42 0 26 0 0 0 chr6 10122624 10122650 -179156904 + AT_rich Low_complexity Low_complexity 1 26 0 312 193 73 73 chr6 10124172 10124281 -179155273 - L1M4 LINE L1 -6426 116 8 1587 167 42 17 chr6 10124918 10125205 -179154349 + AluJb SINE Alu 3 296 -16 1761 148 10 21 chr6 10126097 10126388 -179153166 + AluJo SINE Alu 17 304 -8 321 43 43 0 chr6 10126850 10126896 -179152658 + L1PA7 LINE L1 6107 6154 0 1981 79 61 11 chr6 10129115 10129392 -179150162 + AluSc SINE Alu 1 291 -18 485 279 29 7 chr6 10130034 10130174 -179149380 + L2 LINE L2 3171 3313 0 23 33 0 0 chr6 10131108 10131138 -179148416 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr6 10131410 10131447 -179148107 + AT_rich Low_complexity Low_complexity 1 37 0 349 213 19 9 chr6 10131857 10131965 -179147589 + (CATATA)n Simple_repeat Simple_repeat 2 110 0 202 344 0 42 chr6 10131977 10132073 -179147481 - L3 LINE CR1 -49 1528 1437 186 167 0 0 chr6 10132717 10132753 -179146801 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 414 282 45 0 chr6 10132754 10132864 -179146690 + MIR SINE MIR 1 115 -147 283 240 10 39 chr6 10133407 10133511 -179146043 + GA-rich Low_complexity Low_complexity 3 103 0 2277 81 0 0 chr6 10133542 10133825 -179145729 - AluY SINE Alu -28 283 1 281 233 76 23 chr6 10134086 10134258 -179145296 - L1M4 LINE L1 -848 5298 5118 275 281 97 0 chr6 10134657 10134771 -179144783 + L1ME4a LINE L1 5798 5922 -199 271 272 96 29 chr6 10134791 10134927 -179144627 + L1ME4a LINE L1 5969 6113 -8 3099 301 78 14 chr6 10135305 10136464 -179143090 + L2 LINE L2 961 2194 -1120 715 244 136 42 chr6 10136477 10136785 -179142769 + MSTD LTR MaLR 1 337 -59 7540 27 3 0 chr6 10136789 10138207 -179141347 - L1PA4 LINE L1 -5 6150 4729 21 57 0 0 chr6 10138844 10138879 -179140675 + AT_rich Low_complexity Low_complexity 1 35 0 414 333 91 37 chr6 10139142 10139385 -179140169 - MLT1I LTR MaLR -58 351 96 737 356 85 17 chr6 10139447 10139907 -179139647 + L2 LINE L2 2468 2958 -356 297 250 0 65 chr6 10140716 10140840 -179138714 + L1M4 LINE L1 2876 2991 -3155 23 33 0 0 chr6 10140934 10140964 -179138590 + AT_rich Low_complexity Low_complexity 1 30 0 313 266 94 13 chr6 10141061 10141209 -179138345 - MLT1J2 LTR MaLR -246 200 39 866 210 81 0 chr6 10141232 10141418 -179138136 - MER58A DNA MER1_type -17 207 7 348 304 107 39 chr6 10141439 10141719 -179137835 + L1ME4a LINE L1 5823 6121 0 262 333 83 35 chr6 10143725 10143869 -179135685 + MIR3 SINE MIR 43 193 -15 634 345 131 31 chr6 10143893 10144874 -179134680 + L2 LINE L2 1884 2962 -352 288 319 35 0 chr6 10144989 10145102 -179134452 + L2 LINE L2 3182 3298 -15 212 225 0 0 chr6 10146091 10146131 -179133423 + L3b LINE CR1 1535 1574 -9 1725 164 51 3 chr6 10148054 10148346 -179131208 - AluJb SINE Alu -4 308 3 1905 127 7 4 chr6 10148992 10149268 -179130286 - AluSc SINE Alu -32 277 1 286 288 31 75 chr6 10149518 10149636 -179129918 - MIR SINE MIR -77 185 74 2149 181 65 16 chr6 10149636 10150079 -179129475 + MLT1C LTR MaLR 1 465 -2 286 288 31 75 chr6 10150079 10150120 -179129434 - MIR SINE MIR -188 74 33 2348 109 0 6 chr6 10151629 10151942 -179127612 + AluSx SINE Alu 1 311 -1 1849 89 4 0 chr6 10152776 10153011 -179126543 - AluSq SINE Alu -77 236 1 361 319 18 24 chr6 10153028 10153194 -179126360 + L1MEd LINE L1 955 1119 -5000 413 257 112 95 chr6 10153196 10153687 -179125867 + HAL1 LINE L1 1811 2315 -192 5770 57 0 3 chr6 10153687 10154409 -179125145 - L1PA6 LINE L1 -5 6149 5430 413 257 112 95 chr6 10154409 10154508 -179125046 + HAL1 LINE L1 2315 2411 -96 393 206 35 106 chr6 10155722 10155784 -179123770 - MER94 DNA DNA -3 131 66 1850 154 7 3 chr6 10155784 10156076 -179123478 - AluJb SINE Alu -14 298 6 393 206 35 106 chr6 10156076 10156154 -179123400 - MER94 DNA DNA -68 66 1 239 287 50 69 chr6 10156989 10157090 -179122464 + MER5A DNA MER1_type 88 186 -3 23 0 0 0 chr6 10157142 10157165 -179122389 + AT_rich Low_complexity Low_complexity 1 23 0 568 58 31 79 chr6 10157200 10157682 -179121872 + (TA)n Simple_repeat Simple_repeat 1 458 0 254 209 104 0 chr6 10157689 10157823 -179121731 + (TATAG)n Simple_repeat Simple_repeat 3 150 0 1018 170 0 6 chr6 10158111 10158282 -179121272 - FRAM SINE Alu -13 163 1 1784 208 120 30 chr6 10158903 10158949 -179120605 + MER70A LTR ERVL 1 41 -431 1863 134 22 0 chr6 10158949 10159226 -179120328 - AluSx SINE Alu -13 299 17 1784 208 120 30 chr6 10159226 10159612 -179119942 + MER70A LTR ERVL 41 472 0 2252 92 3 10 chr6 10160764 10161067 -179118487 + AluSc SINE Alu 1 301 -8 270 0 0 0 chr6 10162254 10162284 -179117270 + (T)n Simple_repeat Simple_repeat 1 30 0 204 125 0 0 chr6 10164074 10164106 -179115448 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 214 306 8 81 chr6 10164887 10165011 -179114543 - MIR SINE MIR -30 232 118 22 35 0 0 chr6 10165183 10165212 -179114342 + AT_rich Low_complexity Low_complexity 1 29 0 185 154 39 77 chr6 10165372 10165424 -179114130 - L2 LINE L2 -1 3312 3263 209 224 17 17 chr6 10166203 10166261 -179113293 + CT-rich Low_complexity Low_complexity 4 61 0 505 284 123 20 chr6 10166265 10166469 -179113085 - L2 LINE L2 0 3313 3089 1264 240 91 48 chr6 10167023 10167098 -179112456 - Charlie4a DNA MER1_type -1454 507 437 2053 127 3 3 chr6 10167098 10167390 -179112164 - AluSq SINE Alu -21 292 1 1264 240 91 48 chr6 10167390 10167789 -179111765 - Charlie4a DNA MER1_type -1524 437 13 2331 109 0 0 chr6 10168935 10169239 -179110315 - AluSq SINE Alu -9 304 1 21 0 0 0 chr6 10169285 10169306 -179110248 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr6 10169432 10169474 -179110080 + AT_rich Low_complexity Low_complexity 1 42 0 291 289 143 25 chr6 10169644 10169830 -179109724 + MIR SINE MIR 38 244 -18 234 0 0 0 chr6 10172582 10172608 -179106946 + (TG)n Simple_repeat Simple_repeat 1 26 0 2295 141 11 29 chr6 10172630 10172982 -179106572 + THE1C LTR MaLR 1 347 -28 2168 203 71 68 chr6 10172982 10173613 -179105941 + LTR27 LTR ERV1 2 634 -2 2295 141 11 29 chr6 10173613 10173642 -179105912 + THE1C LTR MaLR 347 375 0 5883 153 57 36 chr6 10173642 10174793 -179104761 + THE1C-int LTR MaLR 1 1176 -404 13582 66 1 1 chr6 10174797 10176473 -179103081 - HERVL LTR ERVL -586 5068 3393 2604 78 0 0 chr6 10176523 10176856 -179102698 - HERVL LTR ERVL -2259 3395 3063 1404 127 106 97 chr6 10176870 10176909 -179102645 - MLT2A1 LTR ERVL 0 444 407 504 117 0 0 chr6 10176909 10176986 -179102568 + (CA)n Simple_repeat Simple_repeat 2 78 0 1404 127 106 97 chr6 10176986 10177286 -179102268 - MLT2A1 LTR ERVL -37 407 102 186 417 0 0 chr6 10177541 10177601 -179101953 - L2 LINE L2 -86 3186 3127 29 47 0 0 chr6 10177774 10177817 -179101737 + AT_rich Low_complexity Low_complexity 1 43 0 1984 152 7 0 chr6 10177936 10178233 -179101321 + AluSx SINE Alu 3 301 -11 828 348 109 44 chr6 10179601 10180916 -179098638 + L2 LINE L2 1701 3090 -182 1945 158 0 6 chr6 10181028 10181339 -179098215 + AluSg SINE Alu 1 309 -1 774 322 82 40 chr6 10181579 10182156 -179097398 - L3 LINE CR1 -1 1576 976 2117 172 52 2 chr6 10182570 10182978 -179096576 + MSTA LTR MaLR 1 428 0 296 197 13 0 chr6 10183321 10183397 -179096157 + L1ME LINE L1 5765 5841 -280 778 242 50 46 chr6 10185493 10185745 -179093809 - MIR SINE MIR -8 254 13 22 0 0 0 chr6 10186472 10186494 -179093060 + AT_rich Low_complexity Low_complexity 1 22 0 338 330 34 1 chr6 10187805 10187974 -179091580 - MIR3 SINE MIR -30 178 3 1889 131 10 24 chr6 10188597 10188894 -179090660 + AluSx SINE Alu 1 293 -19 265 304 13 13 chr6 10189191 10189270 -179090284 - L2 LINE L2 -8 3305 3227 230 304 98 69 chr6 10189596 10189800 -179089754 + MIR SINE MIR 3 212 -50 295 257 37 64 chr6 10190077 10190186 -179089368 - MIR SINE MIR -104 158 53 204 158 0 0 chr6 10190277 10190315 -179089239 + (CA)n Simple_repeat Simple_repeat 1 38 0 2112 125 3 3 chr6 10190456 10190769 -179088785 + AluSq SINE Alu 1 313 0 298 287 16 93 chr6 10191570 10191699 -179087855 - L2 LINE L2 -15 3257 3139 1937 123 17 3 chr6 10191716 10192009 -179087545 + AluSx SINE Alu 1 297 -15 1109 267 16 0 chr6 10192989 10193236 -179086318 + MIR SINE MIR 12 262 0 572 268 77 24 chr6 10194116 10194502 -179085052 - L1ME LINE L1 -587 5579 5172 227 265 39 59 chr6 10194506 10194608 -179084946 - L1MC4 LINE L1 -1 8041 7942 217 213 33 0 chr6 10194613 10194674 -179084880 + (TA)n Simple_repeat Simple_repeat 1 63 0 229 295 100 14 chr6 10194684 10194894 -179084660 - L1ME LINE L1 -987 5159 4932 232 297 11 11 chr6 10194977 10195068 -179084486 + (CATA)n Simple_repeat Simple_repeat 4 94 0 482 181 7 22 chr6 10195099 10195237 -179084317 + (TA)n Simple_repeat Simple_repeat 1 136 0 234 0 0 0 chr6 10195363 10195389 -179084165 + (T)n Simple_repeat Simple_repeat 1 26 0 916 196 0 0 chr6 10195492 10195660 -179083894 - L1PA15 LINE L1 0 6165 5998 249 274 181 34 chr6 10196197 10196434 -179083120 - L1ME LINE L1 -3197 2949 2678 462 307 94 53 chr6 10196477 10196966 -179082588 - L1ME LINE L1 -3528 2618 2110 430 293 133 6 chr6 10197440 10197621 -179081933 + MIR SINE MIR 49 252 -10 1588 252 93 6 chr6 10197724 10198264 -179081290 - L1MC4 LINE L1 -141 7901 7315 1828 270 121 7 chr6 10198277 10198866 -179080688 + MLT2F LTR ERVL 1 656 -7 454 237 101 0 chr6 10198907 10199046 -179080508 - L1MC4 LINE L1 -1431 6611 6459 2552 173 16 10 chr6 10200117 10200621 -179078933 + L1MB1 LINE L1 5661 6167 -1 326 315 67 67 chr6 10201226 10201493 -179078061 - HAL1 LINE L1 -938 1569 1303 2363 63 0 31 chr6 10201564 10201881 -179077673 - AluY SINE Alu -4 307 1 544 249 150 47 chr6 10202080 10202163 -179077391 + MIR SINE MIR 26 99 -163 2247 72 0 0 chr6 10202163 10202440 -179077114 - AluY SINE Alu 0 311 35 544 249 150 47 chr6 10202440 10202549 -179077005 + MIR SINE MIR 99 238 -24 221 196 36 0 chr6 10203459 10203515 -179076039 + (CA)n Simple_repeat Simple_repeat 1 58 0 233 270 61 68 chr6 10205012 10205160 -179074394 + MIR SINE MIR 95 241 -21 2435 145 47 0 chr6 10205907 10206314 -179073240 + MSTB LTR MaLR 1 426 0 345 197 0 0 chr6 10207109 10207180 -179072374 + (TATATG)n Simple_repeat Simple_repeat 3 73 0 1693 150 17 81 chr6 10207818 10208225 -179071329 - L1MA8 LINE L1 0 6291 5911 42 95 0 0 chr6 10209067 10209193 -179070361 + AT_rich Low_complexity Low_complexity 1 126 0 217 184 82 0 chr6 10209268 10209317 -179070237 - L2 LINE L2 0 3313 3261 770 217 19 14 chr6 10210841 10211053 -179068501 + MER33 DNA MER1_type 1 213 -111 1091 135 0 34 chr6 10211062 10211240 -179068314 + AluJb SINE Alu 129 300 -12 356 242 6 19 chr6 10211478 10211635 -179067919 + (TA)n Simple_repeat Simple_repeat 1 155 0 2039 139 7 7 chr6 10211719 10212029 -179067525 + AluSx SINE Alu 1 310 -2 252 0 0 0 chr6 10212683 10212711 -179066843 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 7445 33 0 0 chr6 10212712 10213904 -179065650 - L1PA5 LINE L1 -13 6141 4951 2076 36 0 0 chr6 10213905 10214156 -179065398 + L1PA5 LINE L1 4678 4928 -1218 470 272 95 6 chr6 10214765 10214923 -179064631 - MIR SINE MIR 0 262 91 898 168 69 108 chr6 10215307 10215526 -179064028 + MER33 DNA MER1_type 2 205 -2380 1976 113 39 0 chr6 10215526 10215809 -179063745 + AluSx SINE Alu 1 294 -18 898 168 69 108 chr6 10215809 10215923 -179063631 + MER33 DNA MER1_type 205 322 -2 259 269 67 42 chr6 10215989 10216108 -179063446 - L2 LINE L2 -12 3301 3180 622 137 40 9 chr6 10217510 10217737 -179061817 + (TA)n Simple_repeat Simple_repeat 1 234 0 24 32 0 0 chr6 10218233 10218264 -179061290 + AT_rich Low_complexity Low_complexity 1 31 0 191 270 131 66 chr6 10218607 10218744 -179060810 + MIR SINE MIR 104 249 -13 251 317 41 32 chr6 10218815 10218938 -179060616 - MIR SINE MIR -108 154 31 881 217 22 0 chr6 10219099 10219283 -179060271 + MER5A DNA MER1_type 2 189 0 2064 178 14 0 chr6 10219494 10219854 -179059700 + MLT1A1 LTR MaLR 1 365 0 2196 108 0 52 chr6 10220611 10220936 -179058618 + AluSp SINE Alu 4 311 -2 4019 87 5 7 chr6 10221385 10221940 -179057614 - MER41A LTR ERV1 0 554 1 180 77 0 0 chr6 10222543 10222569 -179056985 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 202 254 109 0 chr6 10223785 10223840 -179055714 - MIR SINE MIR -11 251 191 257 356 149 16 chr6 10224166 10224360 -179055194 + MIR SINE MIR 22 241 -21 223 343 48 18 chr6 10224826 10224992 -179054562 + MIR SINE MIR 8 178 -84 1245 248 52 22 chr6 10224997 10225400 -179054154 - MER66A LTR ERV1 -21 457 43 2292 48 48 10 chr6 10225416 10225705 -179053849 - AluY SINE Alu -11 300 1 380 179 83 0 chr6 10226409 10226493 -179053061 + MER20B DNA MER1_type 13 103 -680 557 103 0 5 chr6 10226493 10226576 -179052978 + Tigger4(Zombi) DNA MER2_type 3 2731 0 1191 297 74 28 chr6 10226653 10227232 -179052322 + MER20B DNA MER1_type 175 780 -3 450 321 29 43 chr6 10227237 10227446 -179052108 + MIR SINE MIR 11 216 -46 2251 104 3 0 chr6 10227499 10227808 -179051746 - AluSq SINE Alu 0 313 4 4300 149 90 24 chr6 10228032 10228879 -179050675 + MER4D LTR ERV1 1 903 0 202 319 77 66 chr6 10228899 10229172 -179050382 - L2 LINE L2 -613 2701 2426 2103 106 0 14 chr6 10229917 10230209 -179049345 - AluSc SINE Alu -21 288 1 2665 221 28 64 chr6 10230230 10231044 -179048510 - L1ME1 LINE L1 -5 6161 5377 346 234 0 65 chr6 10231068 10231192 -179048362 - L1ME1 LINE L1 -948 5198 5083 459 189 22 11 chr6 10231193 10231283 -179048271 + MER5B DNA MER1_type 88 178 0 235 290 0 16 chr6 10231291 10231353 -179048201 - MER5A DNA MER1_type 0 189 129 210 325 138 55 chr6 10231473 10231856 -179047698 - L2 LINE L2 -527 2787 2355 2831 3 0 3 chr6 10231856 10232166 -179047388 + AluYa5 SINE Alu 1 309 -2 210 325 138 55 chr6 10232166 10232259 -179047295 - L2 LINE L2 -959 2355 2271 410 94 16 0 chr6 10234359 10234423 -179045131 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 917 250 89 44 chr6 10235162 10235478 -179044076 + LTR16C LTR ERVL 156 485 -6 2394 94 0 0 chr6 10235778 10236087 -179043467 + AluSc SINE Alu 1 309 0 743 360 50 38 chr6 10236103 10236977 -179042577 + HERV16 LTR ERVL 362 1246 -3750 2216 128 0 0 chr6 10237051 10237357 -179042197 - AluSx SINE Alu -6 306 1 237 310 82 32 chr6 10237616 10237897 -179041657 - L1ME LINE L1 -347 5774 5480 492 168 0 5 chr6 10238308 10238485 -179041069 + AluJo SINE Alu 11 275 -37 365 82 0 16 chr6 10239595 10239656 -179039898 + L1PA6 LINE L1 6094 6153 -1 280 302 0 65 chr6 10241025 10241164 -179038390 - Charlie8 DNA MER1_type -2202 215 86 396 346 56 45 chr6 10241374 10241429 -179038125 + L2 LINE L2 3004 3057 -215 411 68 0 0 chr6 10241429 10241488 -179038066 + (CA)n Simple_repeat Simple_repeat 1 59 0 396 346 56 45 chr6 10241488 10241698 -179037856 + L2 LINE L2 3057 3272 0 22 0 0 0 chr6 10242614 10242636 -179036918 + AT_rich Low_complexity Low_complexity 1 22 0 295 233 126 10 chr6 10243712 10243815 -179035739 + MER94 DNA DNA 7 121 -13 473 264 68 20 chr6 10246837 10246985 -179032569 + MER5B DNA MER1_type 24 178 0 2111 169 83 14 chr6 10246997 10247428 -179032126 - LOR1b LTR ERV1 0 461 1 341 246 0 0 chr6 10247978 10248043 -179031511 + MER91B DNA MER1_type 1 65 -125 2175 121 3 0 chr6 10248785 10249092 -179030462 + AluSq SINE Alu 1 308 -5 198 307 173 0 chr6 10249176 10249251 -179030303 - L2 LINE L2 -25 3247 3160 255 152 0 0 chr6 10249664 10249710 -179029844 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 314 315 112 14 chr6 10250532 10250675 -179028879 + MLT1K LTR MaLR 323 479 -109 445 363 41 14 chr6 10250769 10251064 -179028490 + LTR16A LTR ERVL 70 372 -78 207 0 0 0 chr6 10251765 10251788 -179027766 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 529 159 0 0 chr6 10251803 10251891 -179027663 - AluJ/FLAM SINE Alu -224 88 1 6452 91 6 0 chr6 10251995 10253400 -179026154 - L1PA10 LINE L1 -8 6160 4751 477 301 151 66 chr6 10255108 10255672 -179023882 + L2 LINE L2 2059 2670 -644 594 104 0 0 chr6 10255721 10255817 -179023737 + (TC)n Simple_repeat Simple_repeat 2 97 0 240 35 0 0 chr6 10256522 10256551 -179023003 + (CA)n Simple_repeat Simple_repeat 2 30 0 207 0 0 0 chr6 10256560 10256583 -179022971 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2269 80 0 3 chr6 10256585 10256871 -179022683 - AluSg SINE Alu -25 285 1 269 308 60 26 chr6 10259597 10259714 -179019840 + L2 LINE L2 3146 3266 -6 264 271 25 42 chr6 10261152 10261270 -179018284 + L2 LINE L2 3190 3305 -8 316 346 20 0 chr6 10262187 10262288 -179017266 - MER5A DNA MER1_type 0 189 87 264 258 32 8 chr6 10262314 10262438 -179017116 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 3266 225 45 10 chr6 10263326 10264863 -179014691 - L1MB8 LINE L1 -290 5888 4119 3906 155 48 23 chr6 10264864 10265555 -179013999 + MER50 LTR ERV1 3 710 -24 487 257 18 0 chr6 10265557 10265666 -179013888 - L1MB8 LINE L1 -2023 4123 4013 329 267 103 36 chr6 10265669 10265834 -179013720 - MIR SINE MIR -38 224 49 2876 6 0 21 chr6 10266137 10266462 -179013092 - AluYb8 SINE Alu 0 318 1 23 68 0 0 chr6 10266559 10266603 -179012951 + AT_rich Low_complexity Low_complexity 1 44 0 270 95 0 0 chr6 10270397 10270439 -179009115 + (GA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr6 10271569 10271591 -179007963 + AT_rich Low_complexity Low_complexity 1 22 0 408 20 0 0 chr6 10271807 10271856 -179007698 + (TG)n Simple_repeat Simple_repeat 2 50 0 326 265 119 63 chr6 10274150 10274418 -179005136 - L1ME4a LINE L1 -218 5903 5621 1685 230 61 75 chr6 10274728 10275492 -179004062 - LTR1B LTR ERV1 -15 811 1 549 306 29 29 chr6 10275975 10276145 -179003409 - MIR SINE MIR -57 205 36 41616 74 5 5 chr6 10276346 10282874 -178996680 - L1PA5 LINE L1 -4 6150 11 567 247 35 119 chr6 10282957 10283301 -178996253 - L1MC4a LINE L1 -1866 5942 5628 21 71 0 0 chr6 10283640 10283682 -178995872 + AT_rich Low_complexity Low_complexity 1 42 0 2040 87 6 113 chr6 10283699 10284043 -178995511 - AluSc SINE Alu -2 307 1 180 0 0 0 chr6 10284074 10284094 -178995460 + (TTTTTA)n Simple_repeat Simple_repeat 6 25 0 351 0 0 0 chr6 10284947 10284986 -178994568 + (T)n Simple_repeat Simple_repeat 1 39 0 649 249 86 10 chr6 10285111 10285308 -178994246 - LTR50 LTR ERVL -573 222 11 343 259 0 0 chr6 10285323 10285408 -178994146 + L1ME3A LINE L1 6082 6166 -4 2325 138 35 30 chr6 10287283 10287711 -178991843 + Tigger2a DNA MER2_type 2 431 -3 245 317 49 0 chr6 10288374 10288456 -178991098 + L2 LINE L2 3179 3264 -8 229 212 62 115 chr6 10288798 10288911 -178990643 + L2 LINE L2 3207 3313 0 318 306 104 31 chr6 10289198 10289422 -178990132 - MIR SINE MIR -3 259 23 347 250 33 33 chr6 10289495 10289615 -178989939 + MER103 DNA DNA 45 164 -2 1213 113 20 10 chr6 10289722 10289917 -178989637 - L1PA8 LINE L1 -2 6170 5974 1597 85 0 5 chr6 10289917 10290141 -178989413 + L1PA8 LINE L1 5721 5943 -188 294 313 0 0 chr6 10290442 10290525 -178989029 - MIR SINE MIR -60 202 120 183 80 0 0 chr6 10290792 10290817 -178988737 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 377 327 0 36 chr6 10291517 10291682 -178987872 - MIR SINE MIR -50 212 54 2633 174 42 53 chr6 10292041 10292706 -178986848 + L1MB4 LINE L1 5173 5816 -364 2473 53 3 0 chr6 10292706 10293009 -178986545 + AluY SINE Alu 1 304 -7 2633 174 42 53 chr6 10293009 10293056 -178986498 + L1MB4 LINE L1 5816 5862 -318 675 164 16 16 chr6 10293049 10293177 -178986377 + L1P LINE L1 4947 5074 -1072 * 1586 160 47 13 chr6 10293213 10293531 -178986023 + L1MB4 LINE L1 5852 6180 0 2279 96 3 7 chr6 10294003 10294305 -178985249 + AluSg SINE Alu 1 301 -9 1042 147 0 0 chr6 10294305 10294512 -178985042 + AluSq SINE Alu 134 340 0 318 318 62 36 chr6 10296546 10296738 -178982816 + MIR3 SINE MIR 9 205 -3 2545 121 8 0 chr6 10297257 10297629 -178981925 + THE1C LTR MaLR 1 375 0 255 324 50 50 chr6 10297763 10297945 -178981609 - MIR SINE MIR -32 230 49 276 120 0 0 chr6 10299204 10299254 -178980300 + (CA)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr6 10300822 10300843 -178978711 + AT_rich Low_complexity Low_complexity 1 21 0 543 287 62 10 chr6 10301393 10301588 -178977966 + MIR SINE MIR 46 250 -12 2361 109 0 3 chr6 10303314 10303627 -178975927 + AluSx SINE Alu 1 312 0 243 241 132 71 chr6 10303819 10304033 -178975521 - L1 LINE L1 -1705 4441 4182 249 83 0 0 chr6 10304033 10304069 -178975485 + (TAA)n Simple_repeat Simple_repeat 2 37 0 243 241 132 71 chr6 10304069 10304181 -178975373 - L1 LINE L1 -1964 4182 4078 869 169 90 6 chr6 10304460 10304637 -178974917 - LTR47A LTR ERVL 0 452 261 364 226 21 21 chr6 10306602 10306695 -178972859 + MER103 DNA DNA 55 147 -19 186 394 31 8 chr6 10306793 10306920 -178972634 - L2 LINE L2 0 3272 3143 255 352 23 55 chr6 10306929 10307057 -178972497 + L2 LINE L2 3149 3272 0 862 188 0 18 chr6 10308896 10309061 -178970493 - MER5A DNA MER1_type -25 164 3 619 206 144 45 chr6 10309507 10309787 -178969767 - MLT1D LTR MaLR -43 347 59 843 231 55 107 chr6 10309809 10310212 -178969342 - MLT2C2 LTR ERVL 0 464 83 276 224 15 45 chr6 10310242 10310309 -178969245 - MLT1D LTR MaLR -440 65 1 819 332 52 50 chr6 10310475 10311154 -178968400 - HERVL LTR ERVL -396 5368 4717 2271 73 0 30 chr6 10311154 10311455 -178968099 - AluY SINE Alu -19 292 1 819 332 52 50 chr6 10311455 10311930 -178967624 - HERVL LTR ERVL -1047 4717 4244 440 306 13 39 chr6 10312157 10312387 -178967167 - HERVL LTR ERVL -1485 4000 3777 348 209 11 44 chr6 10314533 10314624 -178964930 + L1MC4a LINE L1 6794 6881 -927 1005 207 43 110 chr6 10314624 10314916 -178964638 - MLT1A1 LTR MaLR 0 365 104 1579 126 99 90 chr6 10314916 10315250 -178964304 + MER1B DNA MER1_type 1 337 0 1005 207 43 110 chr6 10315250 10315348 -178964206 - MLT1A1 LTR MaLR -261 104 1 2360 225 88 45 chr6 10315359 10316183 -178963371 + L1MC4 LINE L1 6965 7828 -167 186 43 0 0 chr6 10316183 10316206 -178963348 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 2360 225 88 45 chr6 10316206 10316382 -178963172 + L1MC4 LINE L1 7828 7995 0 422 189 35 51 chr6 10316766 10316910 -178962644 + L1ME3 LINE L1 6027 6162 -8 297 320 8 0 chr6 10319973 10320098 -178959456 + (TA)n Simple_repeat Simple_repeat 2 127 0 21 0 0 0 chr6 10320148 10320169 -178959385 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 10320294 10320323 -178959231 + AT_rich Low_complexity Low_complexity 1 29 0 886 174 46 78 chr6 10321539 10321757 -178957797 - MER20 DNA MER1_type -3 216 6 189 0 0 0 chr6 10322169 10322190 -178957364 + (T)n Simple_repeat Simple_repeat 1 21 0 2488 76 0 0 chr6 10323364 10323668 -178955886 + AluSp SINE Alu 1 304 -9 22 0 0 0 chr6 10324929 10324951 -178954603 + AT_rich Low_complexity Low_complexity 1 22 0 186 402 30 12 chr6 10325918 10326082 -178953472 - L2 LINE L2 -210 3062 2896 362 267 102 45 chr6 10328610 10328786 -178950768 + MER117 DNA MER1_type 11 196 -1 21 0 0 0 chr6 10329317 10329338 -178950216 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr6 10329378 10329428 -178950126 + AT_rich Low_complexity Low_complexity 1 50 0 2202 121 0 7 chr6 10330121 10330427 -178949127 + AluSx SINE Alu 1 304 -8 743 323 60 60 chr6 10330891 10331445 -178948109 + HAL1b LINE L1 47 600 -748 4806 179 18 20 chr6 10331445 10332341 -178947213 - MER54A LTR ERVL 0 901 8 568 189 56 103 chr6 10332952 10333185 -178946369 + L1MC5 LINE L1 6738 6959 -1002 906 163 32 116 chr6 10333269 10333520 -178946034 - MSTD LTR MaLR 0 396 167 487 304 70 5 chr6 10333539 10333740 -178945814 + MIR SINE MIR 49 262 0 230 232 18 0 chr6 10334073 10334129 -178945425 + MER91 DNA MER1_type 2 58 -82 1978 138 37 40 chr6 10334301 10334677 -178944877 + THE1C LTR MaLR 1 375 0 280 303 189 0 chr6 10334820 10334942 -178944612 + L2 LINE L2 3127 3271 -1 2052 129 3 16 chr6 10335415 10335718 -178943836 - AluSx SINE Alu -10 302 4 212 333 40 0 chr6 10337064 10337139 -178942415 + L2 LINE L2 3193 3270 -2 24 0 0 0 chr6 10338334 10338358 -178941196 + AT_rich Low_complexity Low_complexity 1 24 0 287 340 38 0 chr6 10338793 10338899 -178940655 + MIR SINE MIR 58 167 -95 1997 131 31 3 chr6 10338981 10339272 -178940282 + AluSp SINE Alu 1 299 -14 204 281 47 0 chr6 10339283 10339347 -178940207 + MIR SINE MIR 196 262 0 2940 245 35 62 chr6 10339530 10339727 -178939827 + L1ME3A LINE L1 3847 4048 -2098 1652 168 21 7 chr6 10339727 10340018 -178939536 - AluJb SINE Alu -13 299 5 2940 245 35 62 chr6 10340018 10340529 -178939025 + L1ME3A LINE L1 4048 4511 -1635 2175 122 0 0 chr6 10340529 10340823 -178938731 + AluSx SINE Alu 1 294 -18 2940 245 35 62 chr6 10340823 10341337 -178938217 + L1ME3A LINE L1 4511 5037 -1109 639 218 17 75 chr6 10341318 10341557 -178937997 + L1ME3A LINE L1 5923 6147 -23 * 311 353 24 94 chr6 10341795 10342050 -178937504 - L2 LINE L2 0 3272 3036 360 0 0 0 chr6 10342103 10342143 -178937411 + (TG)n Simple_repeat Simple_repeat 1 40 0 270 0 0 0 chr6 10342142 10342172 -178937382 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 208 362 14 0 chr6 10342257 10342326 -178937228 + L3 LINE CR1 1289 1358 -219 191 309 0 0 chr6 10342464 10342519 -178937035 + L3 LINE CR1 1517 1571 -6 819 133 21 14 chr6 10343163 10343306 -178936248 - L1PB4 LINE L1 -2 6154 6011 467 138 11 0 chr6 10344137 10344224 -178935330 + (TA)n Simple_repeat Simple_repeat 1 88 0 219 221 29 36 chr6 10344368 10344508 -178935046 + GA-rich Low_complexity Low_complexity 3 141 0 308 273 62 57 chr6 10346337 10346513 -178933041 - MLT1J LTR MaLR -92 419 243 186 103 0 0 chr6 10346926 10346955 -178932599 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2149 118 0 3 chr6 10347141 10347430 -178932124 + AluSx SINE Alu 1 288 -24 22 0 0 0 chr6 10347666 10347688 -178931866 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 10348101 10348129 -178931425 + AT_rich Low_complexity Low_complexity 1 28 0 194 281 56 56 chr6 10348505 10348594 -178930960 - MIR3 SINE MIR -30 178 90 234 280 67 27 chr6 10350663 10350738 -178928816 - MIR SINE MIR -119 143 66 22 0 0 0 chr6 10351669 10351691 -178927863 + AT_rich Low_complexity Low_complexity 1 22 0 282 323 15 8 chr6 10351912 10352042 -178927512 - L1ME LINE L1 -296 5849 5719 299 306 104 3 chr6 10352334 10352631 -178926923 - L1ME LINE L1 -1538 4591 4265 268 319 125 19 chr6 10352716 10352876 -178926678 - L2 LINE L2 -1208 2106 1930 181 371 0 0 chr6 10352918 10353007 -178926547 - L2 LINE L2 -1483 1831 1743 2162 119 0 0 chr6 10353295 10353616 -178925938 - AluSx SINE Alu 0 312 1 389 310 69 50 chr6 10353620 10354739 -178924815 - L1ME LINE L1 -2166 3963 2824 469 328 43 48 chr6 10354833 10355184 -178924370 - L1ME LINE L1 -5368 751 403 2497 214 83 82 chr6 10355428 10355542 -178924012 + MER21B LTR ERV1 13 125 -738 2207 125 58 3 chr6 10355542 10355887 -178923667 + THE1B LTR MaLR 1 364 0 2497 214 83 82 chr6 10355887 10356618 -178922936 + MER21B LTR ERV1 125 859 -4 1127 198 9 4 chr6 10356653 10356880 -178922674 - L1MC1 LINE L1 0 6333 6106 306 274 0 0 chr6 10356892 10356976 -178922578 - L1ME LINE L1 -5994 125 42 480 285 7 7 chr6 10357660 10357797 -178921757 + MIR SINE MIR 12 148 -114 1735 116 12 4 chr6 10357797 10358055 -178921499 + MER41B LTR ERV1 1 260 -375 1880 115 7 54 chr6 10358692 10359009 -178920545 - AluSg SINE Alu 0 303 1 370 376 39 6 chr6 10359401 10359579 -178919975 - MLT1J LTR MaLR -50 461 278 415 301 38 75 chr6 10360161 10360453 -178919101 + L3b LINE CR1 1109 1389 -194 44 96 0 0 chr6 10360979 10361114 -178918440 + AT_rich Low_complexity Low_complexity 1 135 0 198 364 23 11 chr6 10361115 10361203 -178918351 - MIR SINE MIR -126 136 48 328 305 40 66 chr6 10361711 10362059 -178917495 + L1MEd LINE L1 597 935 -5184 332 280 59 29 chr6 10362467 10362611 -178916943 + MIR SINE MIR 47 195 -51 2038 119 11 0 chr6 10363786 10364114 -178915440 - AluSc SINE Alu 0 331 1 22 56 0 0 chr6 10365379 10365415 -178914139 + AT_rich Low_complexity Low_complexity 1 36 0 294 206 32 0 chr6 10365486 10365549 -178914005 + MIR SINE MIR 56 120 -142 1471 200 7 4 chr6 10365592 10365862 -178913692 - AluJo SINE Alu -30 282 12 12263 206 23 23 chr6 10366337 10371034 -178908520 - L1MA4 LINE L1 -6 6476 1804 3283 239 31 6 chr6 10371035 10371984 -178907570 - L1MA4 LINE L1 -4585 1743 772 3948 211 6 0 chr6 10372014 10372720 -178906834 - L1MA4 LINE L1 -4618 710 1 22 35 0 0 chr6 10372773 10372802 -178906752 + AT_rich Low_complexity Low_complexity 1 29 0 1603 161 88 21 chr6 10372990 10373215 -178906339 + L1MA9 LINE L1 5915 6123 -189 324 0 0 0 chr6 10373215 10373251 -178906303 + (TC)n Simple_repeat Simple_repeat 1 36 0 216 0 0 0 chr6 10373250 10373274 -178906280 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 1603 161 88 21 chr6 10373251 10373421 -178906133 + L1MA9 LINE L1 6123 6312 0 23 33 0 0 chr6 10373688 10373718 -178905836 + AT_rich Low_complexity Low_complexity 1 30 0 1983 141 144 11 chr6 10374142 10374518 -178905036 - MSTA LTR MaLR 0 428 3 468 330 34 0 chr6 10376151 10376330 -178903224 + L2 LINE L2 3129 3313 0 185 262 143 24 chr6 10376449 10376533 -178903021 + MIR SINE MIR 118 211 -51 281 312 43 0 chr6 10376854 10376947 -178902607 - HERVL LTR ERVL -316 5338 5242 1459 249 46 11 chr6 10376997 10377519 -178902035 + L1M4 LINE L1 2640 3179 -2967 1179 216 47 16 chr6 10378452 10378707 -178900847 - AluJb SINE Alu -49 263 1 21 0 0 0 chr6 10378743 10378764 -178900790 + AT_rich Low_complexity Low_complexity 1 21 0 467 244 78 93 chr6 10379044 10379249 -178900305 - MIR SINE MIR -11 251 50 210 282 0 71 chr6 10379276 10379314 -178900240 + L2 LINE L2 3189 3219 -53 2163 180 105 38 chr6 10379314 10379837 -178899717 + MER74A LTR ERVL 1 558 0 210 282 0 71 chr6 10379837 10379883 -178899671 + L2 LINE L2 3219 3267 -5 2308 91 3 0 chr6 10379966 10380262 -178899292 + AluSq SINE Alu 1 297 -16 213 65 0 0 chr6 10384842 10384873 -178894681 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 279 0 0 0 chr6 10384991 10385022 -178894532 + (TG)n Simple_repeat Simple_repeat 2 32 0 953 109 0 0 chr6 10385359 10385497 -178894057 - AluSg/x SINE Alu 0 310 173 2107 120 3 19 chr6 10386366 10386675 -178892879 + AluSp SINE Alu 1 304 -9 662 200 213 0 chr6 10386738 10386888 -178892666 + MER5A DNA MER1_type 3 184 -5 2015 91 0 7 chr6 10386888 10387163 -178892391 + AluY SINE Alu 1 273 -38 21 36 0 0 chr6 10387328 10387356 -178892198 + AT_rich Low_complexity Low_complexity 1 28 0 694 243 68 10 chr6 10387403 10387609 -178891945 - MER20 DNA MER1_type 0 219 2 203 339 0 0 chr6 10387663 10387719 -178891835 - L2 LINE L2 -16 3256 3201 2174 103 0 41 chr6 10387754 10388073 -178891481 + AluSg SINE Alu 1 306 -4 223 416 10 0 chr6 10388267 10388368 -178891186 + MIR SINE MIR 20 121 -87 2066 114 0 3 chr6 10388370 10388667 -178890887 - AluSg SINE Alu -14 296 1 256 298 94 47 chr6 10388774 10388945 -178890609 - MIR SINE MIR -4 258 80 184 302 0 32 chr6 10389174 10389237 -178890317 - L2 LINE L2 -5 3308 3248 198 0 0 0 chr6 10389377 10389399 -178890155 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr6 10389401 10389423 -178890131 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2528 45 3 16 chr6 10389893 10390205 -178889349 - AluY SINE Alu -3 308 1 231 157 20 20 chr6 10390852 10390903 -178888651 + GA-rich Low_complexity Low_complexity 3 53 0 2426 109 17 0 chr6 10391701 10392050 -178887504 + L1PA11 LINE L1 5818 6172 -2 39 0 0 0 chr6 10392756 10392795 -178886759 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr6 10393314 10393342 -178886212 + AT_rich Low_complexity Low_complexity 1 28 0 337 359 8 8 chr6 10393601 10393718 -178885836 + MIR3 SINE MIR 85 201 -7 216 97 0 0 chr6 10394459 10394490 -178885064 + (TTG)n Simple_repeat Simple_repeat 2 32 0 328 323 50 27 chr6 10395610 10395830 -178883724 + L1M4b LINE L1 24 248 -6611 180 111 0 0 chr6 10396326 10396353 -178883201 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 1722 256 86 55 chr6 10396358 10398527 -178881027 + L1M4b LINE L1 1207 3307 -3650 7657 27 0 0 chr6 10398527 10400010 -178879544 - L1PA4 LINE L1 0 6155 4673 1910 134 30 13 chr6 10400011 10400309 -178879245 + AluSx SINE Alu 1 303 -9 1722 256 86 55 chr6 10400309 10400321 -178879233 + L1M4b LINE L1 3307 3317 -3640 207 0 0 0 chr6 10400321 10400344 -178879210 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1722 256 86 55 chr6 10400344 10400554 -178879000 + L1M4b LINE L1 3317 3782 -3175 1324 221 6 48 chr6 10400556 10400913 -178878641 + L1MB7 LINE L1 5834 6175 -9 22 80 0 0 chr6 10401474 10401524 -178878030 + AT_rich Low_complexity Low_complexity 1 50 0 307 311 68 89 chr6 10401974 10402389 -178877165 - MLT1H LTR MaLR -143 406 1 527 309 94 16 chr6 10402975 10403231 -178876323 + MLT1J2 LTR MaLR 67 342 -108 782 172 0 15 chr6 10403262 10403396 -178876158 + FLAM_A SINE Alu 1 132 -1 336 228 12 18 chr6 10403396 10403563 -178875991 + (TA)n Simple_repeat Simple_repeat 1 166 0 237 270 11 0 chr6 10403566 10403655 -178875899 + L1MC4 LINE L1 6614 6703 -1339 360 0 0 0 chr6 10403702 10403742 -178875812 + (CA)n Simple_repeat Simple_repeat 2 41 0 192 184 0 0 chr6 10406625 10406674 -178872880 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr6 10406875 10406897 -178872657 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 10408640 10408664 -178870890 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr6 10408883 10408923 -178870631 + AT_rich Low_complexity Low_complexity 1 40 0 204 219 0 0 chr6 10411038 10411079 -178868475 + (CATATA)n Simple_repeat Simple_repeat 5 45 0 418 301 13 51 chr6 10411911 10412067 -178867487 + MIR3 SINE MIR 46 195 -13 235 202 28 64 chr6 10412077 10412186 -178867368 + (TTATA)n Simple_repeat Simple_repeat 2 106 0 299 274 245 0 chr6 10412699 10412801 -178866753 + MIR SINE MIR 78 204 -58 212 246 0 31 chr6 10412809 10412874 -178866680 + T-rich Low_complexity Low_complexity 2 64 0 682 250 43 0 chr6 10414158 10414322 -178865232 - MER5B DNA MER1_type -1 177 7 32 26 0 0 chr6 10414533 10414572 -178864982 + AT_rich Low_complexity Low_complexity 1 39 0 199 344 0 31 chr6 10415107 10415171 -178864383 - L2 LINE L2 -22 3291 3230 405 294 56 72 chr6 10415636 10416081 -178863473 - L1ME4a LINE L1 -215 5906 5469 22 56 0 0 chr6 10416477 10416513 -178863041 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr6 10417233 10417259 -178862295 + AT_rich Low_complexity Low_complexity 1 26 0 273 283 0 10 chr6 10418838 10418937 -178860617 + (TA)n Simple_repeat Simple_repeat 2 99 0 2208 78 6 37 chr6 10419614 10419954 -178859600 - AluY SINE Alu 0 311 1 419 316 62 16 chr6 10419980 10420295 -178859259 - MLT1H1 LTR MaLR -2 553 226 474 281 129 36 chr6 10420464 10420798 -178858756 - LTR16A1 LTR ERVL -45 412 48 21 36 0 0 chr6 10421559 10421587 -178857967 + AT_rich Low_complexity Low_complexity 1 28 0 1914 136 45 0 chr6 10422292 10422578 -178856976 + AluSx SINE Alu 4 302 -10 318 26 0 0 chr6 10422675 10422714 -178856840 + (TG)n Simple_repeat Simple_repeat 2 40 0 1223 135 5 0 chr6 10422898 10423083 -178856471 + AluSg/x SINE Alu 120 305 -5 410 235 272 22 chr6 10423174 10423446 -178856108 + L1MC4a LINE L1 5508 5847 -1961 293 269 54 23 chr6 10423609 10423777 -178855777 + MLT1J2 LTR MaLR 266 396 -13 23 0 0 0 chr6 10424779 10424802 -178854752 + AT_rich Low_complexity Low_complexity 1 23 0 4325 129 15 7 chr6 10424861 10425584 -178853970 - L1MA5A LINE L1 -4 6293 5565 320 248 238 0 chr6 10426585 10426686 -178852868 + L2 LINE L2 3189 3313 0 224 310 52 69 chr6 10427268 10427384 -178852170 - MIR SINE MIR -54 208 95 197 300 17 0 chr6 10428203 10428263 -178851291 + MIR SINE MIR 30 90 -118 184 322 49 2 chr6 10428695 10428857 -178850697 - MIR SINE MIR -7 255 53 338 277 108 48 chr6 10428946 10429195 -178850359 - LTR41 LTR ERVL 0 773 510 622 253 11 11 chr6 10429640 10429818 -178849736 - LTR41 LTR ERVL -595 178 1 22 0 0 0 chr6 10430561 10430583 -178848971 + AT_rich Low_complexity Low_complexity 1 22 0 9187 93 12 17 chr6 10430805 10432833 -178846721 + L1PA8 LINE L1 4030 6044 -128 274 278 16 71 chr6 10434588 10434687 -178844867 + MIR3 SINE MIR 72 164 -44 1856 148 10 7 chr6 10434687 10434978 -178844576 - AluSx SINE Alu -20 292 1 274 278 16 71 chr6 10434978 10435004 -178844550 + MIR3 SINE MIR 164 190 -18 3847 137 96 102 chr6 10435622 10437003 -178842551 + pTR5 LTR ERV1 743 2438 0 2349 179 47 61 chr6 10437976 10438485 -178841069 - MLT2B1 LTR ERVL -2 518 17 220 273 0 30 chr6 10440269 10440335 -178839219 + MIR3 SINE MIR 113 176 -32 256 280 164 9 chr6 10440542 10440689 -178838865 - MIR SINE MIR -58 204 38 696 119 0 0 chr6 10440724 10440833 -178838721 + (TA)n Simple_repeat Simple_repeat 2 110 0 1640 167 0 11 chr6 10441485 10441754 -178837800 + AluJo SINE Alu 16 281 -31 21 0 0 0 chr6 10442479 10442500 -178837054 + AT_rich Low_complexity Low_complexity 1 21 0 388 270 217 19 chr6 10443696 10443959 -178835595 - MLT1H1 LTR MaLR 0 555 241 3084 117 68 11 chr6 10444981 10445538 -178834016 - L1MA2 LINE L1 0 6304 5716 10519 176 55 27 chr6 10445538 10447772 -178831782 - L1M1 LINE L1 -706 5599 3269 2200 106 0 0 chr6 10447772 10448056 -178831498 - AluSc SINE Alu -25 284 1 10519 176 55 27 chr6 10448056 10448478 -178831076 - L1M1 LINE L1 -3036 3269 2860 895 288 66 70 chr6 10448567 10449067 -178830487 - LTR33A LTR ERVL -3 520 23 1964 165 13 13 chr6 10449074 10449472 -178830082 + L1 LINE L1 4672 5095 -1051 228 35 0 0 chr6 10449515 10449544 -178830010 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 360 374 53 45 chr6 10449648 10450004 -178829550 + L2 LINE L2 2914 3272 0 384 192 0 26 chr6 10450405 10450483 -178829071 + MLT2D LTR ERVL 1 76 -338 1402 236 117 29 chr6 10450595 10451032 -178828522 + MLT2B1 LTR ERVL 1 485 -35 293 62 21 0 chr6 10451032 10451080 -178828474 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 1402 236 117 29 chr6 10451080 10451120 -178828434 + MLT2B1 LTR ERVL 485 520 0 2099 261 67 3 chr6 10451121 10451685 -178827869 + ERVL-B1 LTR ERVL 2 601 -5163 1284 195 74 0 chr6 10451686 10451942 -178827612 + MLT1A2-int LTR MaLR 1455 1729 -6 1411 233 19 29 chr6 10451982 10452360 -178827194 + MLT1A2 LTR MaLR 1 374 0 1095 178 73 32 chr6 10452639 10452781 -178826773 - AluJo SINE Alu -30 282 124 201 39 0 0 chr6 10452781 10452807 -178826747 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1095 178 73 32 chr6 10452807 10452911 -178826643 - AluJo SINE Alu -188 124 26 330 377 24 6 chr6 10453860 10454027 -178825527 - L3 LINE CR1 -2 1575 1406 197 397 48 8 chr6 10454345 10454471 -178825083 - MIR SINE MIR -58 150 20 212 390 67 0 chr6 10454944 10455049 -178824505 - L2 LINE L2 -19 3253 3142 186 71 0 0 chr6 10455122 10455150 -178824404 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chr6 10455819 10455844 -178823710 + AT_rich Low_complexity Low_complexity 1 25 0 1842 127 15 0 chr6 10455844 10456103 -178823451 - AluSg SINE Alu -45 265 3 22 80 0 0 chr6 10457106 10457156 -178822398 + AT_rich Low_complexity Low_complexity 1 50 0 214 366 0 36 chr6 10457657 10457769 -178821785 - MIR3 SINE MIR -91 117 10 3140 26 3 0 chr6 10458055 10458433 -178821121 + L1PA4 LINE L1 5769 6147 -8 22 35 0 0 chr6 10458472 10458501 -178821053 + AT_rich Low_complexity Low_complexity 1 29 0 1509 193 23 16 chr6 10459913 10460219 -178819335 - AluJb SINE Alu -4 308 1 263 309 70 39 chr6 10460963 10461193 -178818361 + L2 LINE L2 3031 3267 -46 291 308 67 0 chr6 10461578 10461682 -178817872 + MIR SINE MIR 132 242 -20 5059 176 40 18 chr6 10462021 10462869 -178816685 - L1MA9 LINE L1 0 6312 5484 2272 8 0 4 chr6 10462869 10463123 -178816431 + AluYa5 SINE Alu 56 308 -3 5059 176 40 18 chr6 10463123 10463997 -178815557 - L1MA9 LINE L1 -828 5484 4570 2616 117 0 0 chr6 10463997 10464372 -178815182 + THE1C LTR MaLR 1 375 0 9143 121 60 44 chr6 10464372 10465927 -178813627 + THE1C-int LTR MaLR 1 1580 0 2568 113 11 3 chr6 10465927 10466297 -178813257 + THE1C LTR MaLR 1 373 -2 3735 180 49 44 chr6 10466303 10467185 -178812369 - L1MA9 LINE L1 -1572 4574 3689 304 266 64 0 chr6 10470167 10470261 -178809293 - L1MC4 LINE L1 -1350 6692 6593 32 43 0 0 chr6 10470327 10470373 -178809181 + AT_rich Low_complexity Low_complexity 1 46 0 38 61 0 0 chr6 10470424 10470490 -178809064 + AT_rich Low_complexity Low_complexity 1 66 0 325 143 13 13 chr6 10470919 10470996 -178808558 + T-rich Low_complexity Low_complexity 2 78 0 181 361 0 0 chr6 10471373 10471445 -178808109 + MIR SINE MIR 53 124 -138 21 36 0 0 chr6 10471731 10471759 -178807795 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 10475194 10475224 -178804330 + AT_rich Low_complexity Low_complexity 1 30 0 240 35 0 0 chr6 10475438 10475467 -178804087 + (TG)n Simple_repeat Simple_repeat 1 29 0 256 99 0 62 chr6 10476686 10476767 -178802787 + (TA)n Simple_repeat Simple_repeat 2 77 0 195 69 0 0 chr6 10476865 10476894 -178802660 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 36 40 0 0 chr6 10479300 10479350 -178800204 + AT_rich Low_complexity Low_complexity 1 50 0 187 377 14 0 chr6 10480075 10480144 -178799410 - MIR3 SINE MIR -11 197 128 2166 121 0 0 chr6 10481265 10481572 -178797982 + AluSx SINE Alu 1 307 0 29 28 0 0 chr6 10482294 10482330 -178797224 + AT_rich Low_complexity Low_complexity 1 36 0 552 246 113 0 chr6 10482588 10482730 -178796824 - MIR SINE MIR -101 161 4 209 323 50 72 chr6 10483062 10483381 -178796173 + L2 LINE L2 2423 2734 -580 1445 144 44 31 chr6 10483482 10483801 -178795753 + MER33 DNA MER1_type 2 324 0 381 170 69 202 chr6 10484057 10484245 -178795309 - MIR SINE MIR -21 241 79 326 287 21 21 chr6 10484441 10484535 -178795019 + L2 LINE L2 3171 3264 -8 195 100 0 0 chr6 10484610 10484640 -178794914 + (TAA)n Simple_repeat Simple_repeat 3 32 0 233 326 156 22 chr6 10485512 10485782 -178793772 - L2 LINE L2 0 3313 3008 2215 94 0 3 chr6 10485848 10486161 -178793393 - AluY SINE Alu 0 312 1 351 250 121 36 chr6 10486398 10486538 -178793016 - MIR SINE MIR 0 262 111 444 296 56 52 chr6 10488627 10488840 -178790714 + MIR SINE MIR 9 222 -40 2344 78 0 0 chr6 10488958 10489261 -178790293 - AluSg SINE Alu 0 303 1 265 263 114 0 chr6 10489441 10489555 -178789999 - LTR50 LTR ERVL -9 786 660 180 176 0 0 chr6 10489625 10489659 -178789895 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 306 244 194 50 chr6 10489710 10489870 -178789684 - LTR50 LTR ERVL -132 663 481 * 466 223 59 94 chr6 10489865 10490067 -178789487 - LTR50 LTR ERVL -462 333 139 1761 192 39 0 chr6 10490649 10490983 -178788571 + MER7A DNA MER2_type 1 345 -1 270 245 43 101 chr6 10491084 10491223 -178788331 + LTR67 LTR ERVL 283 413 -144 16796 134 14 13 chr6 10491877 10493408 -178786146 - Tigger2 DNA MER2_type -38 2680 1142 2126 135 0 0 chr6 10493408 10493712 -178785842 - AluSg SINE Alu -6 304 1 16796 134 14 13 chr6 10493712 10494856 -178784698 - Tigger2 DNA MER2_type -1576 1142 1 251 146 146 0 chr6 10494880 10494928 -178784626 + MLT1J LTR MaLR 136 190 -321 21 0 0 0 chr6 10495482 10495503 -178784051 + AT_rich Low_complexity Low_complexity 1 21 0 363 174 29 0 chr6 10496341 10496410 -178783144 + MER116 DNA Mariner 8 78 -2 253 361 12 36 chr6 10496464 10496630 -178782924 - MIR SINE MIR -51 211 50 646 224 0 28 chr6 10497011 10497154 -178782400 + MLT1E1 LTR MaLR 2 140 -514 1129 190 18 18 chr6 10497207 10497433 -178782121 + MLT1E1 LTR MaLR 428 653 -1 332 326 76 15 chr6 10497820 10497958 -178781596 - MIR SINE MIR -62 146 7 26 50 0 0 chr6 10498510 10498550 -178781004 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr6 10499186 10499215 -178780339 + AT_rich Low_complexity Low_complexity 1 29 0 767 365 159 14 chr6 10499436 10500348 -178779206 + L2 LINE L2 1854 2897 -417 407 323 78 91 chr6 10500378 10500685 -178778869 + L2 LINE L2 2968 3270 -2 1463 199 78 65 chr6 10501731 10502178 -178777376 - LTR40b LTR ERVL 0 462 10 1347 14 0 0 chr6 10503177 10503325 -178776229 - AluY SINE Alu -6 305 158 860 313 148 49 chr6 10503510 10505160 -178774394 + L2 LINE L2 1493 3311 -2 236 238 12 25 chr6 10505203 10505283 -178774271 + GA-rich Low_complexity Low_complexity 4 82 0 182 105 26 0 chr6 10505301 10505339 -178774215 + A-rich Low_complexity Low_complexity 2 40 0 222 276 226 50 chr6 10505339 10505520 -178774034 - MIR SINE MIR -10 252 40 2117 116 3 0 chr6 10505671 10505977 -178773577 + AluSx SINE Alu 1 307 0 18810 59 7 16 chr6 10506011 10509043 -178770511 - L1PA6 LINE L1 -6 6148 3140 2766 16 0 0 chr6 10509043 10509347 -178770207 - AluYa5 SINE Alu -7 304 1 18810 59 7 16 chr6 10509347 10509623 -178769931 - L1PA6 LINE L1 -3014 3140 2863 5355 49 3 0 chr6 10509623 10510272 -178769282 + L1PA5 LINE L1 5493 6146 -8 18815 110 22 14 chr6 10510282 10513129 -178766425 - L1PA6 LINE L1 -3267 2879 10 274 349 18 66 chr6 10513562 10513728 -178765826 - MIR SINE MIR -48 214 57 409 304 77 17 chr6 10513941 10514122 -178765432 - MIR SINE MIR -50 212 21 22 0 0 0 chr6 10514955 10514977 -178764577 + AT_rich Low_complexity Low_complexity 1 22 0 1287 227 36 48 chr6 10516495 10516908 -178762646 - MLT2C1 LTR ERVL 0 464 1 6119 209 39 12 chr6 10516909 10518373 -178761181 - ERVL-C1 LTR ERVL -9 5755 4221 1539 219 25 6 chr6 10518371 10518696 -178760858 - ERVL-C1 LTR ERVL -1903 3861 3531 * 1563 225 72 29 chr6 10520011 10520527 -178759027 - L1M4 LINE L1 -1200 4946 4409 3289 258 56 20 chr6 10520561 10521830 -178757724 - L1M4 LINE L1 -2110 4036 2723 21 0 0 0 chr6 10522356 10522377 -178757177 + AT_rich Low_complexity Low_complexity 1 21 0 261 157 14 29 chr6 10522666 10522736 -178756818 + CT-rich Low_complexity Low_complexity 4 72 0 231 309 0 0 chr6 10522740 10522795 -178756759 + polypyrimidine Low_complexity Low_complexity 1 55 0 24 0 0 0 chr6 10523533 10523557 -178755997 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 10524927 10524956 -178754598 + AT_rich Low_complexity Low_complexity 1 29 0 273 97 113 0 chr6 10524956 10525018 -178754536 - L1MA7 LINE L1 -5 6286 6218 21 36 0 0 chr6 10526100 10526128 -178753426 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr6 10526580 10526605 -178752949 + (TG)n Simple_repeat Simple_repeat 2 26 0 728 263 0 0 chr6 10527002 10527162 -178752392 + MER5A DNA MER1_type 30 189 0 2134 121 0 0 chr6 10527917 10528199 -178751355 + AluSg SINE Alu 3 284 -26 436 287 64 5 chr6 10528415 10528617 -178750937 - L1ME4a LINE L1 -195 5926 5713 239 412 7 7 chr6 10528776 10528912 -178750642 - L3 LINE CR1 -766 811 676 2095 113 7 3 chr6 10529568 10529886 -178749668 - AluSq SINE Alu 0 319 1 1351 162 28 1 chr6 10530989 10531253 -178748301 - MLT2C2 LTR ERVL -140 274 1 1132 294 58 5 chr6 10531255 10531684 -178747870 - L1ME4a LINE L1 -2038 5770 5319 295 298 53 58 chr6 10531856 10532044 -178747510 - L1ME3A LINE L1 -8 6162 5976 33 25 0 0 chr6 10532087 10532127 -178747427 + AT_rich Low_complexity Low_complexity 1 40 0 733 252 97 63 chr6 10532139 10532209 -178747345 - L1ME3A LINE L1 -242 5928 5862 2521 54 0 0 chr6 10532209 10532503 -178747051 + AluY SINE Alu 1 294 -17 733 252 97 63 chr6 10532503 10532813 -178746741 - L1ME3A LINE L1 -308 5862 5535 21 57 0 0 chr6 10532931 10532966 -178746588 + AT_rich Low_complexity Low_complexity 1 35 0 950 248 42 30 chr6 10532981 10533385 -178746169 - L1ME3A LINE L1 -3043 3103 2695 1057 254 93 97 chr6 10533442 10533936 -178745618 + MLT1E LTR MaLR 1 544 -49 253 345 9 62 chr6 10537695 10537808 -178741746 - MIR SINE MIR -127 135 29 735 248 56 25 chr6 10538239 10538437 -178741117 + L2 LINE L2 2581 2784 -530 350 260 0 21 chr6 10538438 10538534 -178741020 - LTR33 LTR ERVL -77 444 351 859 296 15 11 chr6 10538540 10538800 -178740754 - LTR40a LTR ERVL -154 365 105 368 315 78 31 chr6 10538989 10539310 -178740244 - L1ME3A LINE L1 -3497 2649 2314 455 264 0 0 chr6 10539316 10539426 -178740128 - LTR33 LTR ERVL -2 519 410 1563 217 126 21 chr6 10539983 10540356 -178739198 - MLT1E2 LTR MaLR 0 626 215 835 232 0 6 chr6 10540671 10540839 -178738715 - FAM SINE Alu -8 167 1 765 208 7 0 chr6 10540851 10540995 -178738559 - MLT1E2 LTR MaLR -421 203 59 1109 215 55 42 chr6 10541095 10541402 -178738152 + MLT2C1 LTR ERVL 3 313 -84 3547 114 12 4 chr6 10541427 10541934 -178737620 - MER9 LTR ERVK 0 511 1 515 154 8 0 chr6 10541936 10542053 -178737501 + (TCTA)n Simple_repeat Simple_repeat 3 120 0 267 54 0 0 chr6 10542110 10542147 -178737407 + (CA)n Simple_repeat Simple_repeat 2 38 0 748 240 30 123 chr6 10542185 10542552 -178737002 - MLT1E2-int LTR MaLR -65 1306 974 1681 188 21 40 chr6 10544319 10544691 -178734863 + MLT1A1 LTR MaLR 1 365 0 2144 112 0 3 chr6 10544890 10545186 -178734368 + AluSg1 SINE Alu 1 295 -14 1318 249 95 49 chr6 10545347 10545545 -178734009 - MER21B LTR ERV1 -134 729 541 2696 120 31 12 chr6 10545545 10545963 -178733591 + MSTA LTR MaLR 1 426 -2 1318 249 95 49 chr6 10545963 10546291 -178733263 - MER21B LTR ERV1 -322 541 179 3023 80 5 10 chr6 10546404 10546792 -178732762 + MLT2A1 LTR ERVL 1 389 -55 189 0 0 0 chr6 10546792 10546813 -178732741 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 225 0 0 0 chr6 10546812 10546837 -178732717 + (GA)n Simple_repeat Simple_repeat 2 26 0 3023 80 5 10 chr6 10546813 10546850 -178732704 + MLT2A1 LTR ERVL 389 400 -44 382 122 0 24 chr6 10546855 10546937 -178732617 + (TA)n Simple_repeat Simple_repeat 2 81 0 378 109 0 0 chr6 10546946 10547001 -178732553 + MLT2A1 LTR ERVL 390 444 0 22 0 0 0 chr6 10548091 10548113 -178731441 + AT_rich Low_complexity Low_complexity 1 22 0 597 301 121 42 chr6 10548611 10549182 -178730372 + ERVL LTR ERVL 7 622 -4374 327 381 52 8 chr6 10549800 10550049 -178729505 + ERVL LTR ERVL 1422 1681 -4083 550 315 26 30 chr6 10550257 10550489 -178729065 + ERVL LTR ERVL 2759 2989 -2007 300 319 69 13 chr6 10550539 10550742 -178728812 + ERVL LTR ERVL 3293 3508 -1977 1887 148 7 0 chr6 10550832 10551109 -178728445 - AluSx SINE Alu -23 289 11 495 337 49 11 chr6 10551222 10551489 -178728065 + ERVL LTR ERVL 3680 3956 -1698 392 346 82 34 chr6 10551588 10552415 -178727139 + ERVL LTR ERVL 4143 5049 -644 1367 129 139 102 chr6 10552819 10553319 -178726235 - LTR18B LTR ERVL 0 614 2 1805 209 90 2 chr6 10553557 10553958 -178725596 - LTR32 LTR ERVL 0 471 36 2257 189 58 42 chr6 10554011 10554560 -178724994 - MER74A LTR ERVL 0 558 1 230 312 106 35 chr6 10556373 10556543 -178723011 - MIR3 SINE MIR -23 185 4 405 261 119 45 chr6 10557037 10557213 -178722341 + MIR SINE MIR 20 208 -54 1101 193 103 29 chr6 10557258 10557637 -178721917 - L1MC5 LINE L1 -32 7929 7523 325 196 10 21 chr6 10558409 10558506 -178721048 + (CATATA)n Simple_repeat Simple_repeat 2 97 0 207 330 112 41 chr6 10559171 10559368 -178720186 + L2 LINE L2 2362 2572 -742 2115 253 34 16 chr6 10559372 10560499 -178719055 - L1ME1 LINE L1 -198 6763 5620 1153 270 64 13 chr6 10560519 10560975 -178718579 - L1ME1 LINE L1 -1743 5198 4720 2294 270 73 47 chr6 10560981 10563663 -178715891 - L1ME1 LINE L1 -2756 4185 1246 554 221 6 22 chr6 10563674 10563855 -178715699 + CT-rich Low_complexity Low_complexity 1 178 0 513 159 53 0 chr6 10563869 10564020 -178715534 + CT-rich Low_complexity Low_complexity 2 160 0 315 345 176 14 chr6 10564090 10564374 -178715180 - L1ME1 LINE L1 -5226 1197 868 702 293 103 36 chr6 10564572 10565033 -178714521 - L1ME1 LINE L1 -5842 581 79 1371 163 132 0 chr6 10565033 10565186 -178714368 - AluJo SINE Alu -21 291 160 201 39 0 0 chr6 10565186 10565212 -178714342 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1371 163 132 0 chr6 10565212 10565315 -178714239 - AluJo SINE Alu -152 160 1 702 293 103 36 chr6 10565315 10565376 -178714178 - L1ME1 LINE L1 -6344 79 24 6407 45 13 5 chr6 10565579 10566370 -178713184 - L1PA7 LINE L1 -12 6142 5346 249 108 0 0 chr6 10567064 10567101 -178712453 + (GAAA)n Simple_repeat Simple_repeat 1 37 0 211 308 103 17 chr6 10567905 10568022 -178711532 - MIR3 SINE MIR -9 199 73 419 280 84 109 chr6 10568077 10569244 -178710310 + L1MEc LINE L1 36 1173 -5223 295 204 0 32 chr6 10569457 10569550 -178710004 + L1MEc LINE L1 2179 2268 -4128 408 246 22 0 chr6 10569552 10569690 -178709864 + L1MEc LINE L1 3878 4018 -2197 954 241 72 4 chr6 10570203 10570439 -178709115 + HERVL40 LTR ERVL 5279 5530 0 1007 285 51 42 chr6 10570439 10570793 -178708761 + LTR40b LTR ERVL 1 357 -105 323 141 16 0 chr6 10570793 10570857 -178708697 + CT-rich Low_complexity Low_complexity 1 65 0 279 133 0 0 chr6 10570852 10570897 -178708657 + (TCCCC)n Simple_repeat Simple_repeat 2 46 0 * 504 231 9 36 chr6 10570900 10571101 -178708453 - L1MEc LINE L1 -4509 1938 1734 387 161 0 0 chr6 10571109 10571176 -178708378 + LTR40b LTR ERVL 404 462 0 1314 228 84 37 chr6 10571187 10571836 -178707718 + L1MC4a LINE L1 6187 6823 -1033 346 201 112 45 chr6 10571916 10572050 -178707504 - L1MEc LINE L1 -3239 2976 2834 382 175 50 0 chr6 10572059 10572139 -178707415 - L1MEc LINE L1 -4320 2076 1993 1200 297 67 42 chr6 10572249 10572643 -178706911 - L1MEc LINE L1 -4578 1818 1435 2252 119 0 0 chr6 10572643 10572955 -178706599 - AluSq SINE Alu -1 312 1 1200 297 67 42 chr6 10572955 10573533 -178706021 - L1MEc LINE L1 -4961 1435 822 422 55 0 0 chr6 10573533 10573588 -178705966 - MLT2A1 LTR ERVL 0 453 399 190 54 27 27 chr6 10573633 10573670 -178705884 + (TA)n Simple_repeat Simple_repeat 2 38 0 271 83 83 0 chr6 10573690 10573738 -178705816 - HERVL LTR ERVL -144 5510 5459 2679 88 39 5 chr6 10573768 10574152 -178705402 - MLT2A1 LTR ERVL -44 400 4 41738 71 22 24 chr6 10574155 10576689 -178702865 - HERVL-A1 LTR ERVL 0 5654 3119 181 258 56 45 chr6 10576689 10576778 -178702776 + L2 LINE L2 2605 2694 -620 41738 71 22 24 chr6 10576778 10579814 -178699740 - HERVL-A1 LTR ERVL -2535 3119 2 334 94 38 0 chr6 10579815 10579868 -178699686 - MLT2A1 LTR ERVL 0 453 399 247 139 76 25 chr6 10579868 10579947 -178699607 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 389 208 0 6 chr6 10579960 10580277 -178699277 + (TA)n Simple_repeat Simple_repeat 1 315 0 2822 79 26 5 chr6 10580278 10580669 -178698885 - MLT2A1 LTR ERVL -45 399 1 1365 274 38 84 chr6 10580670 10581490 -178698064 - L1MEc LINE L1 -5571 825 44 326 122 71 30 chr6 10581498 10581598 -178697956 + L1M4 LINE L1 5555 5660 -514 * 1052 220 11 51 chr6 10581596 10581847 -178697707 + L1MC4 LINE L1 6766 7007 -1035 2074 103 7 13 chr6 10581847 10582147 -178697407 + AluSg1 SINE Alu 1 298 -11 1052 220 11 51 chr6 10582147 10582168 -178697386 + L1MC4 LINE L1 7007 7027 -1015 542 243 80 26 chr6 10582173 10582355 -178697199 + MER63 DNA MER1_type 4 1673 -15 1363 237 130 75 chr6 10582367 10582806 -178696748 + L1MC4 LINE L1 7022 7522 -520 1874 162 52 16 chr6 10582806 10583189 -178696365 - MLT2C1 LTR ERVL 0 397 1 1363 237 130 75 chr6 10583189 10583518 -178696036 + L1MC4 LINE L1 7522 7832 -210 1291 199 59 97 chr6 10583580 10584002 -178695552 + MLT1D LTR MaLR 48 453 -52 26 0 0 0 chr6 10584026 10584052 -178695502 + AT_rich Low_complexity Low_complexity 1 26 0 1244 188 35 8 chr6 10584052 10584307 -178695247 - L1PB4 LINE L1 -14 6142 5881 998 168 7 0 chr6 10585210 10585365 -178694189 + AluSg/x SINE Alu 136 291 -21 23 0 0 0 chr6 10585381 10585404 -178694150 + AT_rich Low_complexity Low_complexity 1 23 0 314 369 9 9 chr6 10585404 10585515 -178694039 - MIR SINE MIR -148 114 4 309 388 48 0 chr6 10586322 10586517 -178693037 - MIR SINE MIR -33 229 26 416 274 18 26 chr6 10588212 10588325 -178691229 - L2 LINE L2 0 3313 3202 355 321 65 10 chr6 10588490 10588688 -178690866 + MIR3 SINE MIR 45 260 -2 195 320 58 86 chr6 10588979 10589270 -178690284 + L2 LINE L2 2221 2503 -811 216 0 0 0 chr6 10589404 10589428 -178690126 + (A)n Simple_repeat Simple_repeat 1 24 0 522 0 0 0 chr6 10589428 10589486 -178690068 + (TA)n Simple_repeat Simple_repeat 2 59 0 1810 175 96 13 chr6 10589486 10589881 -178689673 + MLT1C LTR MaLR 38 465 -2 1561 221 37 68 chr6 10590648 10591165 -178688389 - MLT1D LTR MaLR 0 505 5 228 314 89 16 chr6 10591399 10591523 -178688031 + MIR3 SINE MIR 66 198 -10 180 0 0 0 chr6 10593309 10593329 -178686225 + (T)n Simple_repeat Simple_repeat 1 20 0 263 206 32 32 chr6 10594433 10594496 -178685058 - MIR SINE MIR -90 172 110 290 348 45 29 chr6 10595636 10595857 -178683697 + MIR3 SINE MIR 15 248 -14 183 80 0 0 chr6 10596608 10596633 -178682921 + (GAGTG)n Simple_repeat Simple_repeat 3 27 0 24 0 0 0 chr6 10597474 10597498 -178682056 + AT_rich Low_complexity Low_complexity 1 24 0 210 118 0 0 chr6 10598676 10598710 -178680844 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 213 197 0 0 chr6 10600167 10600228 -178679326 + (CA)n Simple_repeat Simple_repeat 1 61 0 286 89 18 18 chr6 10600282 10600338 -178679216 + (TA)n Simple_repeat Simple_repeat 2 57 0 1234 249 81 23 chr6 10601546 10601910 -178677644 + MLT1E LTR MaLR 246 593 0 330 143 0 63 chr6 10601911 10601974 -178677580 + LTR40b LTR ERVL 404 462 0 1493 256 7 44 chr6 10601987 10602393 -178677161 + HERVL40 LTR ERVL 17 407 -5123 3351 300 35 11 chr6 10602436 10603415 -178676139 + HERVL40 LTR ERVL 2882 3883 -1647 2003 216 78 58 chr6 10603415 10604162 -178675392 + L1M4b LINE L1 1024 1781 -5074 1933 114 0 22 chr6 10604162 10604434 -178675120 + AluSx SINE Alu 1 266 -46 522 84 0 24 chr6 10604434 10604517 -178675037 + Alu SINE Alu 227 307 -2 1433 281 76 38 chr6 10604520 10605241 -178674313 + L1M4b LINE L1 1789 2687 -4451 4693 239 38 49 chr6 10605271 10607161 -178672393 + L1MEc LINE L1 1734 3555 -2660 1704 173 20 48 chr6 10607161 10607519 -178672035 - MER7A DNA MER2_type 0 346 1 4693 239 38 49 chr6 10607519 10607644 -178671910 + L1MEc LINE L1 3555 3680 -2535 5090 45 6 0 chr6 10607654 10608279 -178671275 + L1P LINE L1 8 636 -5510 5568 39 1 0 chr6 10608279 10608948 -178670606 + L1PA4 LINE L1 5483 6152 -3 3316 217 26 22 chr6 10608953 10609719 -178669835 + L1MEc LINE L1 3677 4448 -1767 2145 124 0 0 chr6 10609719 10610018 -178669536 + AluSx SINE Alu 6 304 -8 3316 217 26 22 chr6 10610018 10610100 -178669454 + L1MEc LINE L1 4448 4528 -1687 2282 87 3 0 chr6 10610110 10610410 -178669144 + AluY SINE Alu 1 301 -10 322 373 16 5 chr6 10610410 10610603 -178668951 + MER89-int LTR ERV1 6291 6485 -316 * 1343 218 26 0 chr6 10610494 10610827 -178668727 + HERVL40 LTR ERVL 2783 5522 -8 1558 226 174 16 chr6 10610859 10611296 -178668258 + LTR40a LTR ERVL 13 518 -1 378 0 0 0 chr6 10611715 10611757 -178667797 + (CA)n Simple_repeat Simple_repeat 2 43 0 3218 62 28 9 chr6 10611959 10612413 -178667141 + L1PA6 LINE L1 5708 6169 0 1273 97 0 0 chr6 10612517 10612682 -178666872 + AluSg/x SINE Alu 132 296 -16 2074 95 70 0 chr6 10616076 10616361 -178663193 - AluSq SINE Alu -8 305 1 28 29 0 0 chr6 10616509 10616544 -178663010 + AT_rich Low_complexity Low_complexity 1 35 0 4096 133 13 4 chr6 10616691 10617368 -178662186 + L1MC1 LINE L1 5650 6332 -1 643 278 98 31 chr6 10617929 10618153 -178661401 + L1ME4a LINE L1 5159 5367 -795 1825 155 50 0 chr6 10618153 10618431 -178661123 + AluSx SINE Alu 1 292 -20 643 278 98 31 chr6 10618431 10618600 -178660954 + L1ME4a LINE L1 5367 5523 -639 198 0 0 0 chr6 10618600 10618622 -178660932 + (TA)n Simple_repeat Simple_repeat 2 23 0 643 278 98 31 chr6 10618622 10618817 -178660737 + L1ME4a LINE L1 5523 5799 -363 1676 168 0 0 chr6 10619333 10619607 -178659947 - MLT1B LTR MaLR 0 390 117 613 110 64 0 chr6 10619637 10619746 -178659808 - L1MA1 LINE L1 0 6302 6187 225 0 0 0 chr6 10619840 10619865 -178659689 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 727 54 0 54 chr6 10620151 10620185 -178659369 - MLT1B LTR MaLR -284 106 72 1894 144 32 53 chr6 10620185 10620559 -178658995 + MER47A DNA MER2_type 1 366 0 727 54 0 54 chr6 10620559 10620636 -178658918 - MLT1B LTR MaLR -318 72 1 225 0 0 0 chr6 10621242 10621267 -178658287 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 261 248 17 60 chr6 10621360 10621477 -178658077 + HAL1b LINE L1 439 550 -798 923 271 26 0 chr6 10622810 10623039 -178656515 - MIR SINE MIR -1 261 27 277 276 51 31 chr6 10623038 10623136 -178656418 + MER5A DNA MER1_type 79 178 -11 * 414 229 93 7 chr6 10623259 10623399 -178656155 + L1ME4a LINE L1 5956 6107 -14 946 218 56 23 chr6 10626744 10626960 -178652594 - MER58A DNA MER1_type 0 224 2 878 275 83 81 chr6 10627864 10628210 -178651344 - L3 LINE CR1 -2 1575 1226 1349 209 92 9 chr6 10628210 10628525 -178651029 - MER58B DNA MER1_type 0 341 1 878 275 83 81 chr6 10628525 10628611 -178650943 - L3 LINE CR1 -351 1226 1142 2259 107 0 10 chr6 10628634 10628943 -178650611 - AluSx SINE Alu 0 312 7 288 253 41 175 chr6 10628987 10629279 -178650275 - MIR SINE MIR -4 258 6 * 391 351 68 16 chr6 10629252 10629500 -178650054 - L3 LINE CR1 -1139 438 178 2410 99 0 0 chr6 10629602 10629944 -178649610 + AluSx SINE Alu 1 342 0 314 282 14 28 chr6 10629944 10630086 -178649468 + MARNA DNA Mariner 427 566 -20 221 0 0 33 chr6 10630128 10630158 -178649396 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3245 102 15 2 chr6 10630785 10631247 -178648307 - L1PA11 LINE L1 -4 6170 5703 2261 108 0 23 chr6 10631266 10631572 -178647982 - AluSx SINE Alu -13 299 1 478 263 7 29 chr6 10631730 10631867 -178647687 + L2 LINE L2 3168 3301 -12 273 98 0 0 chr6 10631869 10631910 -178647644 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 551 198 150 55 chr6 10632033 10632306 -178647248 + L1MC5 LINE L1 7609 7907 -54 346 233 148 74 chr6 10632431 10632620 -178646934 - L2 LINE L2 -2 3311 3109 288 200 0 0 chr6 10632672 10632732 -178646822 + (TG)n Simple_repeat Simple_repeat 1 60 0 199 283 0 0 chr6 10633045 10633091 -178646463 + L2 LINE L2 3223 3268 -4 1196 171 87 95 chr6 10634249 10634617 -178644937 - MLT1A2 LTR MaLR -4 370 6 1131 277 84 41 chr6 10634723 10635370 -178644184 - L2 LINE L2 0 3313 2636 301 314 66 93 chr6 10635503 10635945 -178643609 - L2 LINE L2 -7 3265 2836 227 119 0 24 chr6 10636218 10636260 -178643294 - MLT1A2 LTR MaLR -301 73 33 28 0 0 0 chr6 10638981 10639009 -178640545 + AT_rich Low_complexity Low_complexity 1 28 0 2451 118 58 0 chr6 10640072 10640453 -178639101 - MER57A LTR ERV1 0 403 1 345 306 55 73 chr6 10640898 10641225 -178638329 + L2 LINE L2 2931 3251 -62 216 207 0 35 chr6 10641641 10641699 -178637855 + GA-rich Low_complexity Low_complexity 4 59 0 864 198 6 6 chr6 10642041 10642236 -178637318 - AluJ SINE Alu 0 327 133 207 0 0 0 chr6 10642236 10642259 -178637295 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1793 154 25 0 chr6 10642262 10642416 -178637138 - AluSx SINE Alu -25 287 121 393 39 0 0 chr6 10642416 10642467 -178637087 + (TG)n Simple_repeat Simple_repeat 2 52 0 1793 154 25 0 chr6 10642467 10642592 -178636962 - AluSx SINE Alu -191 121 1 890 112 0 30 chr6 10642625 10642759 -178636795 - AluJ SINE Alu -178 134 5 1340 198 0 71 chr6 10643462 10643785 -178635769 + AluJo SINE Alu 3 302 -10 252 228 39 78 chr6 10643931 10644137 -178635417 + L1ME4a LINE L1 5765 5962 -159 201 195 0 0 chr6 10644321 10644362 -178635192 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1406 214 159 67 chr6 10644385 10644613 -178634941 + MLT1E2 LTR MaLR 2 207 -419 2176 124 18 47 chr6 10644613 10644999 -178634555 - THE1C LTR MaLR 0 375 1 1406 214 159 67 chr6 10644999 10645341 -178634213 + MLT1E2 LTR MaLR 207 625 -1 3854 129 177 101 chr6 10645600 10647043 -178632511 + pTR5 LTR ERV1 762 2437 -1 263 264 100 9 chr6 10648255 10648365 -178631189 - MIR SINE MIR -20 242 123 242 318 23 23 chr6 10648538 10648626 -178630928 - MIR SINE MIR -144 118 31 1952 132 0 7 chr6 10648655 10648936 -178630618 + AluSg SINE Alu 24 302 -8 528 222 68 23 chr6 10648972 10649148 -178630406 + L1MC5 LINE L1 7741 7924 -37 378 0 0 0 chr6 10650004 10650046 -178629508 + (CA)n Simple_repeat Simple_repeat 2 43 0 295 215 117 16 chr6 10650062 10650195 -178629359 + MLT1L LTR MaLR 257 458 -124 196 115 0 0 chr6 10650842 10650868 -178628686 - L2 LINE L2 -19 3253 3228 261 370 24 0 chr6 10651299 10651426 -178628128 - MIR3 SINE MIR -7 201 72 28 0 0 0 chr6 10652626 10652654 -178626900 + AT_rich Low_complexity Low_complexity 1 28 0 285 204 0 0 chr6 10653028 10653082 -178626472 - L2 LINE L2 0 3272 3219 700 257 50 37 chr6 10653124 10653342 -178626212 - MIR SINE MIR -19 243 23 1561 193 10 13 chr6 10653538 10653849 -178625705 + AluJo SINE Alu 1 310 -2 224 295 0 0 chr6 10653852 10653913 -178625641 + A-rich Low_complexity Low_complexity 2 62 0 2172 105 7 7 chr6 10655158 10655463 -178624091 + AluSx SINE Alu 3 307 -5 189 0 0 0 chr6 10655564 10655585 -178623969 + (A)n Simple_repeat Simple_repeat 1 21 0 934 254 67 25 chr6 10655599 10655914 -178623640 - MLT1K LTR MaLR -69 519 192 2101 134 33 3 chr6 10655974 10656333 -178623221 - MLT1B LTR MaLR 0 390 21 326 274 32 8 chr6 10656689 10656813 -178622741 + MER103 DNA DNA 19 145 -21 2105 161 11 14 chr6 10656974 10657340 -178622214 + MLT1A1 LTR MaLR 1 365 0 449 213 11 0 chr6 10659190 10659284 -178620270 - MIR3 SINE MIR -13 195 101 181 324 82 82 chr6 10659816 10660526 -178619028 + L2 LINE L2 2246 2955 -359 390 243 23 57 chr6 10660790 10660967 -178618587 + MER104 DNA Tc2 7 177 -3 3846 61 29 2 chr6 10660967 10661477 -178618077 + L1PA8 LINE L1 5640 6163 -9 807 81 0 16 chr6 10661488 10661611 -178617943 + L1PA8 LINE L1 6052 6172 0 235 221 29 44 chr6 10662133 10662201 -178617353 - MIR SINE MIR -7 255 189 1527 196 101 16 chr6 10662219 10662596 -178616958 + LTR52 LTR ERVL 1 409 -12 276 269 0 13 chr6 10662727 10662805 -178616749 + L2 LINE L2 2599 2675 -639 1323 253 73 22 chr6 10664073 10664484 -178615070 - MER70B LTR ERVL -146 432 1 207 0 0 0 chr6 10666154 10666177 -178613377 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 1982 231 47 32 chr6 10667019 10667612 -178611942 + Charlie1a DNA MER1_type 27 628 -827 204 173 19 19 chr6 10668241 10668293 -178611261 + T-rich Low_complexity Low_complexity 2 53 0 470 153 191 0 chr6 10668447 10668604 -178610950 - MER33 DNA MER1_type -21 303 117 1168 216 73 28 chr6 10668604 10668962 -178610592 - MLT1A2 LTR MaLR 0 390 1 658 183 0 15 chr6 10668962 10669078 -178610476 - MER33 DNA MER1_type -205 119 6 713 283 212 12 chr6 10670163 10670644 -178608910 + MLT1K LTR MaLR 10 586 -2 202 288 152 66 chr6 10671008 10671206 -178608348 + L2 LINE L2 2573 2787 -527 2146 127 0 34 chr6 10671401 10671725 -178607829 - AluSp SINE Alu 0 313 1 2847 22 0 0 chr6 10673241 10673559 -178605995 - AluYb8 SINE Alu 0 318 1 2130 101 57 0 chr6 10673805 10674101 -178605453 + AluSq SINE Alu 1 313 0 2932 95 5 16 chr6 10674536 10674967 -178604587 + L1PA13 LINE L1 5736 6161 -2 2395 85 0 3 chr6 10675163 10675470 -178604084 - AluY SINE Alu -5 306 1 1451 151 57 72 chr6 10675472 10675877 -178603677 - Charlie1 DNA MER1_type -20 2741 2343 1803 144 26 32 chr6 10676196 10676536 -178603018 + LTR32 LTR ERVL 15 352 -119 248 29 29 0 chr6 10676920 10676955 -178602599 + LTR32 LTR ERVL 317 352 -119 758 173 26 32 chr6 10677045 10677201 -178602353 + LTR32 LTR ERVL 317 471 0 2199 176 84 18 chr6 10677206 10677640 -178601914 + MLT2B1 LTR ERVL 1 472 -48 402 21 0 0 chr6 10677640 10677687 -178601867 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 2199 176 84 18 chr6 10677687 10677740 -178601814 + MLT2B1 LTR ERVL 472 520 0 291 235 206 47 chr6 10678405 10678575 -178600979 + MLT1K LTR MaLR 388 584 -4 521 222 137 0 chr6 10679468 10679621 -178599933 - MER69A DNA AcHobo -3 174 1 187 360 88 20 chr6 10679840 10679987 -178599567 - MIR3 SINE MIR -7 201 45 298 305 26 71 chr6 10680174 10680328 -178599226 + MIR SINE MIR 52 198 -64 2569 102 11 3 chr6 10680880 10681241 -178598313 + THE1B LTR MaLR 1 364 0 346 276 40 51 chr6 10681362 10681713 -178597841 + HAL1 LINE L1 835 1181 -1326 1929 144 46 0 chr6 10681833 10682118 -178597436 + AluJo SINE Alu 1 298 -14 2096 155 46 46 chr6 10682234 10682666 -178596888 - Tigger2a DNA MER2_type -2 432 1 502 301 110 29 chr6 10683158 10683392 -178596162 - MIR SINE MIR -11 251 3 392 252 63 16 chr6 10683418 10683545 -178596009 - MIR SINE MIR -46 216 84 2422 77 0 3 chr6 10684837 10685134 -178594420 + AluY SINE Alu 1 296 -15 21 0 0 0 chr6 10686363 10686384 -178593170 + AT_rich Low_complexity Low_complexity 1 21 0 740 237 49 17 chr6 10686672 10686916 -178592638 - MIR SINE MIR 0 262 20 212 133 44 0 chr6 10687341 10687386 -178592168 + T-rich Low_complexity Low_complexity 6 52 0 3234 76 40 0 chr6 10687386 10687836 -178591718 - L1PB1 LINE L1 0 6151 5684 228 111 0 0 chr6 10687851 10687887 -178591667 + (T)n Simple_repeat Simple_repeat 1 36 0 235 275 210 6 chr6 10688786 10689139 -178590415 + L1ME4a LINE L1 5696 6120 -1 364 179 439 0 chr6 10689898 10690021 -178589533 - MER5B DNA MER1_type 0 178 2 291 54 0 0 chr6 10691896 10691933 -178587621 + (TG)n Simple_repeat Simple_repeat 1 37 0 234 286 0 77 chr6 10693377 10693468 -178586086 - L2 LINE L2 -5 3267 3184 3371 102 18 75 chr6 10694010 10694568 -178584986 - MER1A DNA MER1_type 0 527 2 198 248 70 85 chr6 10695391 10695520 -178584034 + MER5A DNA MER1_type 36 162 -27 180 77 0 0 chr6 10696204 10696230 -178583324 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 944 210 0 6 chr6 10698609 10698776 -178580778 + FRAM SINE Alu 1 166 0 1991 310 101 1 chr6 10699131 10700182 -178579372 - L2 LINE L2 0 3313 2155 415 205 24 0 chr6 10700195 10700349 -178579205 + AluJ/FRAM SINE Alu 226 381 0 813 168 17 11 chr6 10700359 10700538 -178579016 + GA-rich Low_complexity Low_complexity 1 180 0 183 312 165 0 chr6 10700682 10700791 -178578763 - L2 LINE L2 -1185 2129 2003 1665 158 45 27 chr6 10701008 10701300 -178578254 + AluJo SINE Alu 1 297 -15 625 271 70 70 chr6 10701301 10702279 -178577275 + L1MEd LINE L1 567 1581 -4729 8339 29 1 0 chr6 10702580 10704342 -178575212 + L1PA3 LINE L1 4392 6154 -1 5422 131 31 5 chr6 10704665 10705820 -178573734 + L1PB2 LINE L1 4964 6148 -3 2141 116 27 0 chr6 10705845 10706139 -178573415 + AluSx SINE Alu 1 302 -10 1481 276 90 35 chr6 10706145 10707726 -178571828 + L1MEd LINE L1 2228 3895 -2234 1433 195 0 0 chr6 10707833 10708079 -178571475 - AluJo SINE Alu -66 246 1 22 35 0 0 chr6 10708342 10708371 -178571183 + AT_rich Low_complexity Low_complexity 1 29 0 243 347 81 0 chr6 10708461 10708585 -178570969 - L2 LINE L2 -2417 897 764 189 0 0 0 chr6 10709889 10709910 -178569644 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 2099 122 20 0 chr6 10711130 10711434 -178568120 + AluSq SINE Alu 1 310 -3 465 274 9 0 chr6 10711465 10711578 -178567976 - MIR3 SINE MIR -21 187 74 373 196 9 9 chr6 10712120 10712232 -178567322 + (TA)n Simple_repeat Simple_repeat 2 113 0 371 210 72 6 chr6 10712285 10712452 -178567102 + (TA)n Simple_repeat Simple_repeat 2 179 0 294 241 0 74 chr6 10714021 10714129 -178565425 + MIR SINE MIR 33 132 -76 267 307 111 56 chr6 10714586 10714928 -178564626 + MLT1K LTR MaLR 191 551 -37 628 218 8 0 chr6 10715103 10715227 -178564327 + FLAM_A SINE Alu 1 125 -8 331 296 31 75 chr6 10715670 10715829 -178563725 + MER5A DNA MER1_type 26 177 -12 340 259 28 28 chr6 10715851 10715959 -178563595 + MER5A DNA MER1_type 54 161 -28 1629 175 28 15 chr6 10715998 10716323 -178563231 - MLT1A1 LTR MaLR -13 352 24 374 254 62 57 chr6 10716691 10716868 -178562686 + MER5B DNA MER1_type 1 178 0 1622 171 14 24 chr6 10717039 10717326 -178562228 - AluJo SINE Alu -15 297 14 2085 105 14 11 chr6 10717704 10717989 -178561565 - AluSg SINE Alu -12 298 13 2059 127 3 0 chr6 10718241 10718525 -178561029 + AluSx SINE Alu 1 285 -27 216 0 0 0 chr6 10718525 10718549 -178561005 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 484 323 40 20 chr6 10718919 10719117 -178560437 + MIR SINE MIR 23 224 -38 692 230 110 19 chr6 10719217 10719426 -178560128 + L3b LINE CR1 1103 1330 -253 1777 153 0 18 chr6 10719643 10719925 -178559629 + AluJb SINE Alu 32 308 -4 280 356 42 0 chr6 10720060 10720178 -178559376 - MIR SINE MIR -120 142 20 1947 140 14 0 chr6 10720826 10721119 -178558435 + AluSx SINE Alu 1 297 -15 294 140 0 0 chr6 10721692 10721742 -178557812 + MADE1 DNA Mariner 1 50 -30 1424 101 141 4 chr6 10722182 10722409 -178557145 - Tigger2 DNA MER2_type 0 2718 2461 4403 136 29 18 chr6 10722476 10722742 -178556812 - Tigger2 DNA MER2_type -1976 742 480 1914 124 4 0 chr6 10722742 10723008 -178556546 - AluSx SINE Alu -13 299 33 4403 136 29 18 chr6 10723008 10723467 -178556087 - Tigger2 DNA MER2_type -2238 480 9 1163 252 77 48 chr6 10724188 10724669 -178554885 + L2 LINE L2 2819 3313 0 1670 197 10 0 chr6 10726410 10726705 -178552849 + AluJb SINE Alu 1 298 -14 859 235 98 0 chr6 10727006 10727210 -178552344 + MER58A DNA MER1_type 1 224 0 2294 96 3 0 chr6 10727450 10727742 -178551812 - AluSp SINE Alu -20 293 1 1878 133 32 7 chr6 10727754 10728039 -178551515 - AluJo SINE Alu -20 292 1 2318 98 13 0 chr6 10728226 10728542 -178551012 + L1PA8 LINE L1 5851 6170 -2 886 281 50 0 chr6 10728547 10728789 -178550765 - MIR SINE MIR -3 259 6 2321 90 0 0 chr6 10728926 10729215 -178550339 - AluSc SINE Alu -20 289 1 3277 175 24 24 chr6 10729916 10730540 -178549014 + L1MC1 LINE L1 1 624 -5802 * 6435 193 29 33 chr6 10730527 10732926 -178546628 + L1MC1 LINE L1 3903 6293 -320 2027 122 21 0 chr6 10732926 10733212 -178546342 - AluSx SINE Alu -20 292 1 6435 193 29 33 chr6 10733212 10733514 -178546040 + L1MC1 LINE L1 6293 6595 -18 32 0 0 0 chr6 10733517 10733549 -178546005 + AT_rich Low_complexity Low_complexity 1 32 0 316 257 233 38 chr6 10735547 10735579 -178543975 - MIR SINE MIR -2 260 236 613 185 117 19 chr6 10735579 10735741 -178543813 - MER104 DNA MER2_type -2 178 1 316 257 233 38 chr6 10735741 10735918 -178543636 - MIR SINE MIR -26 236 10 703 203 0 8 chr6 10736300 10736418 -178543136 + FLAM_A SINE Alu 5 121 -12 1602 189 0 7 chr6 10736442 10736722 -178542832 + AluJb SINE Alu 19 296 -16 5801 123 30 45 chr6 10737117 10737392 -178542162 - L1PA16 LINE L1 -9 6157 5879 1569 151 7 52 chr6 10737392 10737664 -178541890 - AluJb SINE Alu -52 260 1 5801 123 30 45 chr6 10737664 10738271 -178541283 - L1PA16 LINE L1 -287 5879 5300 7577 55 3 6 chr6 10738271 10739890 -178539664 - L1PA6 LINE L1 -1 6153 4547 5801 123 30 45 chr6 10739890 10740156 -178539398 - L1PA16 LINE L1 -866 5300 5032 853 133 11 22 chr6 10740519 10740699 -178538855 + GA-rich Low_complexity Low_complexity 3 180 0 2307 89 17 0 chr6 10741701 10741993 -178537561 - AluSx SINE Alu -15 297 1 189 0 0 0 chr6 10743127 10743148 -178536406 + (GA)n Simple_repeat Simple_repeat 2 22 0 25 0 0 0 chr6 10743736 10743761 -178535793 + AT_rich Low_complexity Low_complexity 1 25 0 258 32 0 0 chr6 10743837 10743868 -178535686 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 718 71 0 0 chr6 10743870 10743955 -178535599 - L1PA8 LINE L1 -13 6159 6075 2472 83 3 6 chr6 10744643 10744956 -178534598 - AluSp SINE Alu -1 312 1 213 281 122 24 chr6 10745640 10745722 -178533832 - L2 LINE L2 0 3313 3224 407 354 159 26 chr6 10746238 10747085 -178532469 - L2 LINE L2 -641 2673 1714 25 31 0 0 chr6 10747182 10747214 -178532340 + AT_rich Low_complexity Low_complexity 1 32 0 7625 222 63 30 chr6 10747444 10750811 -178528743 + L1MD1 LINE L1 19 3275 -3265 2120 164 37 70 chr6 10750811 10751293 -178528261 + MER31B LTR ERV1 1 466 0 7625 222 63 30 chr6 10751293 10752131 -178527423 + L1MD1 LINE L1 3275 4084 -2456 252 0 0 0 chr6 10752131 10752159 -178527395 + (TA)n Simple_repeat Simple_repeat 2 29 0 7625 222 63 30 chr6 10752159 10752267 -178527287 + L1MD1 LINE L1 4084 4187 -2353 1559 174 4 12 chr6 10752267 10752526 -178527028 + AluJo SINE Alu 40 296 -16 7625 222 63 30 chr6 10752526 10752840 -178526714 + L1MD1 LINE L1 4187 4968 -1572 1794 195 78 45 chr6 10752847 10753214 -178526340 - MLT1C LTR MaLR 0 467 81 2305 146 84 30 chr6 10753214 10753618 -178525936 - MSTA LTR MaLR -2 426 1 1794 195 78 45 chr6 10753618 10753697 -178525857 - MLT1C LTR MaLR -386 81 6 4710 179 47 59 chr6 10753705 10753827 -178525727 + L1MD1 LINE L1 4976 5098 -1538 2451 80 0 3 chr6 10753827 10754139 -178525415 + AluY SINE Alu 1 311 0 4710 179 47 59 chr6 10754139 10754613 -178524941 + L1MD1 LINE L1 5098 5576 -1060 2366 90 0 19 chr6 10754613 10754925 -178524629 + AluY SINE Alu 1 306 -5 4710 179 47 59 chr6 10754925 10755128 -178524426 + L1MD1 LINE L1 5576 5780 -856 3107 56 0 0 chr6 10755128 10755483 -178524071 - THE1A LTR MaLR 0 355 1 4710 179 47 59 chr6 10755483 10756029 -178523525 + L1MD1 LINE L1 5780 6310 -326 2304 102 3 0 chr6 10756029 10756324 -178523230 - AluSx SINE Alu -16 296 1 4710 179 47 59 chr6 10756324 10756648 -178522906 + L1MD1 LINE L1 6310 6636 0 337 322 175 0 chr6 10757024 10757195 -178522359 - MIR SINE MIR -12 250 50 621 53 0 0 chr6 10757209 10757284 -178522270 + Alu SINE Alu 2 76 -242 6137 83 5 1 chr6 10757304 10758123 -178521431 + L1PA12 LINE L1 5346 6167 -1 192 152 0 0 chr6 10758146 10758179 -178521375 + A-rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr6 10759337 10759369 -178520185 + AT_rich Low_complexity Low_complexity 1 32 0 323 301 21 0 chr6 10759520 10759613 -178519941 + L1MC4 LINE L1 6614 6708 -1334 1479 141 18 0 chr6 10759820 10760047 -178519507 + MLT1B LTR MaLR 1 231 -159 688 177 0 19 chr6 10760049 10760207 -178519347 + GA-rich Low_complexity Low_complexity 3 157 0 1197 51 0 17 chr6 10760220 10760397 -178519157 + (GAA)n Simple_repeat Simple_repeat 3 176 0 1143 121 24 0 chr6 10760411 10760577 -178518977 + MLT1B LTR MaLR 221 390 0 1586 193 0 60 chr6 10760980 10761133 -178518421 + AluJb SINE Alu 1 125 -187 2228 107 0 7 chr6 10761133 10761446 -178518108 + AluSc SINE Alu 1 309 0 1586 193 0 60 chr6 10761446 10761624 -178517930 + AluJb SINE Alu 125 312 0 302 171 14 0 chr6 10761626 10761696 -178517858 + GA-rich Low_complexity Low_complexity 3 73 0 2247 247 16 11 chr6 10761696 10762267 -178517287 + L1MEc LINE L1 413 986 -5410 1160 160 32 0 chr6 10762313 10762500 -178517054 + AluJb SINE Alu 87 279 -33 297 169 42 0 chr6 10762516 10762587 -178516967 + L1MEc LINE L1 1011 1084 -5312 204 275 101 0 chr6 10762587 10762656 -178516898 + MIR SINE MIR 151 226 -36 1557 131 139 59 chr6 10763684 10764021 -178515533 - THE1B LTR MaLR 0 364 1 422 202 26 70 chr6 10764349 10764463 -178515091 + MER5A DNA MER1_type 4 112 -77 309 79 4 180 chr6 10764601 10764675 -178514879 + MLT1B LTR MaLR 1 65 -309 186 43 0 0 chr6 10764703 10764726 -178514828 + (A)n Simple_repeat Simple_repeat 1 23 0 526 207 37 112 chr6 10765778 10765966 -178513588 - MIR SINE MIR -43 219 46 2213 113 3 0 chr6 10765973 10766273 -178513281 + AluSp SINE Alu 5 305 -8 1284 117 0 0 chr6 10766273 10766444 -178513110 + AluSp SINE Alu 134 304 -9 574 290 45 49 chr6 10766648 10766759 -178512795 + MIR SINE MIR 40 150 -112 2271 105 3 0 chr6 10766759 10767065 -178512489 + AluSg SINE Alu 1 307 -3 574 290 45 49 chr6 10767065 10767177 -178512377 + MIR SINE MIR 150 262 0 200 316 132 0 chr6 10767197 10767273 -178512281 + L2 LINE L2 3186 3271 -1 2502 131 14 3 chr6 10767417 10767777 -178511777 + THE1B LTR MaLR 1 364 0 2276 105 0 10 chr6 10767981 10768286 -178511268 + AluY SINE Alu 1 302 -9 1984 139 0 23 chr6 10768297 10768600 -178510954 + AluSx SINE Alu 1 296 -16 24 53 0 0 chr6 10768777 10768815 -178510739 + AT_rich Low_complexity Low_complexity 1 38 0 2188 64 0 64 chr6 10769129 10769440 -178510114 - AluY SINE Alu -20 291 1 195 42 0 0 chr6 10769967 10769991 -178509563 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 369 309 24 8 chr6 10822143 10822266 -178457288 - L2 LINE L2 0 3272 3148 736 192 49 105 chr6 10822587 10822614 -178456940 - LTR37B LTR ERV1 -1 467 440 2164 229 45 9 chr6 10822614 10823059 -178456495 + LTR40b LTR ERVL 1 461 -1 736 192 49 105 chr6 10823059 10823171 -178456383 - LTR37B LTR ERV1 -28 440 323 2271 114 0 0 chr6 10823171 10823478 -178456076 + AluSg SINE Alu 1 307 -3 736 192 49 105 chr6 10823478 10823490 -178456064 - LTR37B LTR ERV1 -145 323 312 1598 142 32 64 chr6 10823490 10823801 -178455753 + AluJb SINE Alu 1 301 -11 303 28 0 0 chr6 10823801 10823837 -178455717 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 736 192 49 105 chr6 10823837 10823968 -178455586 - LTR37B LTR ERV1 -154 314 198 500 156 43 118 chr6 10824009 10824220 -178455334 - LTR37B LTR ERV1 -268 200 6 402 252 136 7 chr6 10824221 10824376 -178455178 + MIR SINE MIR 86 260 -2 300 154 0 0 chr6 10824454 10824506 -178455048 + (TG)n Simple_repeat Simple_repeat 1 52 0 23 33 0 0 chr6 10824625 10824655 -178454899 + AT_rich Low_complexity Low_complexity 1 30 0 957 145 42 190 chr6 10825607 10825710 -178453844 + MER33 DNA MER1_type 1 118 -2506 2140 123 3 7 chr6 10825710 10826012 -178453542 + AluSx SINE Alu 1 301 -11 957 145 42 190 chr6 10826012 10826284 -178453270 + MER33 DNA MER1_type 118 363 0 295 318 13 73 chr6 10826363 10826514 -178453040 + MIR3 SINE MIR 48 189 -19 440 294 61 39 chr6 10826781 10826961 -178452593 - MLT1I LTR MaLR -3 406 223 2042 135 4 0 chr6 10827235 10827516 -178452038 + AluSx SINE Alu 1 282 -30 2060 124 3 3 chr6 10827648 10827970 -178451584 + AluSx SINE Alu 1 322 0 589 332 24 0 chr6 10828965 10829170 -178450384 - MIR SINE MIR -6 256 47 880 173 25 12 chr6 10829195 10829357 -178450197 - MLT2C1 LTR ERVL 0 397 234 939 106 0 0 chr6 10829361 10829503 -178450051 + (TTCC)n Simple_repeat Simple_repeat 4 145 0 1224 152 0 30 chr6 10829503 10829700 -178449854 - AluJo SINE Alu -35 277 87 1249 178 46 0 chr6 10829700 10829919 -178449635 - MLT2C1 LTR ERVL -168 229 1 2394 97 0 0 chr6 10829950 10830258 -178449296 + AluSc SINE Alu 1 308 -1 2330 102 3 13 chr6 10830432 10830747 -178448807 - AluSp SINE Alu -1 312 1 1384 152 137 31 chr6 10831020 10831315 -178448239 + AluJo SINE Alu 1 322 0 1201 174 5 9 chr6 10831346 10831559 -178447995 - AluJo SINE Alu -14 298 87 21 0 0 0 chr6 10831815 10831836 -178447718 + AT_rich Low_complexity Low_complexity 1 21 0 1543 160 86 12 chr6 10832522 10832778 -178446776 + AluSx SINE Alu 1 275 -37 204 40 0 0 chr6 10832782 10832807 -178446747 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2167 115 3 3 chr6 10833211 10833516 -178446038 + AluSx SINE Alu 1 305 -7 2023 171 39 26 chr6 10833826 10834241 -178445313 - LOR1b LTR ERV1 -32 429 10 2239 80 11 0 chr6 10835566 10835842 -178443712 + AluSx SINE Alu 21 299 -13 267 98 0 0 chr6 10835842 10835877 -178443677 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 2510 84 3 0 chr6 10836283 10836594 -178442960 + AluSp SINE Alu 1 312 -1 386 271 90 0 chr6 10838458 10838580 -178440974 - MIR SINE MIR -115 147 15 2177 105 20 3 chr6 10839118 10839413 -178440141 + AluSc SINE Alu 1 300 -9 825 180 74 0 chr6 10839482 10839671 -178439883 + Tigger3b DNA MER2_type 1 203 -1028 2779 135 98 25 chr6 10839871 10840419 -178439135 + Tigger3b DNA MER2_type 150 737 -494 1877 166 0 7 chr6 10840419 10840721 -178438833 + AluJo SINE Alu 1 300 -12 2287 72 21 7 chr6 10840822 10841112 -178438442 + AluSg1 SINE Alu 1 294 -15 220 111 44 0 chr6 10841142 10841187 -178438367 + (TA)n Simple_repeat Simple_repeat 2 48 0 1646 205 76 59 chr6 10841248 10841332 -178438222 - MLT1C LTR MaLR 0 467 386 1677 167 7 26 chr6 10841332 10841546 -178438008 + AluJo SINE Alu 12 220 -92 2176 100 3 0 chr6 10841546 10841835 -178437719 + AluSq SINE Alu 5 294 -19 1677 167 7 26 chr6 10841835 10841925 -178437629 + AluJo SINE Alu 220 310 -2 1646 205 76 59 chr6 10841925 10842299 -178437255 - MLT1C LTR MaLR -81 386 1 1967 110 55 31 chr6 10842602 10842894 -178436660 - AluSc SINE Alu -10 299 1 2125 74 41 0 chr6 10844428 10844730 -178434824 - AluY SINE Alu 0 313 1 182 308 29 19 chr6 10844756 10844797 -178434757 - MIR SINE MIR -66 196 157 438 20 0 0 chr6 10844797 10844848 -178434706 + (TG)n Simple_repeat Simple_repeat 2 52 0 182 308 29 19 chr6 10844848 10844910 -178434644 - MIR SINE MIR -105 157 92 249 33 0 0 chr6 10845299 10845329 -178434225 + (CA)n Simple_repeat Simple_repeat 2 31 0 2557 57 0 0 chr6 10846692 10846990 -178432564 - AluY SINE Alu -13 298 1 1955 125 18 0 chr6 10847049 10847355 -178432199 - AluSx SINE Alu 0 311 1 888 167 13 7 chr6 10847467 10847617 -178431937 - MER106B DNA MER1_type -908 151 1 183 156 0 0 chr6 10847797 10847829 -178431725 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 372 340 14 14 chr6 10848752 10848961 -178430593 + MIR SINE MIR 40 248 -14 2578 68 0 0 chr6 10849030 10849339 -178430215 + AluSg SINE Alu 1 309 -1 449 244 0 17 chr6 10849707 10849822 -178429732 + L2 LINE L2 3193 3305 -8 365 82 16 16 chr6 10849854 10849915 -178429639 - Alu SINE Alu 0 300 240 357 267 19 29 chr6 10850224 10850329 -178429225 - L1MC/D LINE L1 -1998 5810 5707 2295 95 3 3 chr6 10850329 10850645 -178428909 + LTR8 LTR ERV1 272 587 -104 35 0 0 0 chr6 10850645 10850680 -178428874 + AT_rich Low_complexity Low_complexity 1 35 0 291 274 113 9 chr6 10850852 10850958 -178428596 + L1ME LINE L1 5495 5611 -510 4275 183 58 25 chr6 10851578 10852411 -178427143 + MER21B LTR ERV1 1 860 -3 273 288 0 0 chr6 10853354 10853479 -178426075 + (TG)n Simple_repeat Simple_repeat 1 125 0 2230 122 0 3 chr6 10853792 10854104 -178425450 + AluSx SINE Alu 1 311 -1 1919 125 43 0 chr6 10854451 10854730 -178424824 - AluJo SINE Alu -21 291 1 2296 91 0 7 chr6 10854830 10855139 -178424415 - AluSg SINE Alu -3 307 1 1678 153 0 39 chr6 10855209 10855518 -178424036 + AluJo SINE Alu 12 309 0 1675 142 19 61 chr6 10855583 10855767 -178423787 - AluJo SINE Alu -15 297 130 2354 88 0 0 chr6 10855767 10856061 -178423493 + AluSc SINE Alu 2 295 -14 1675 142 19 61 chr6 10856061 10856186 -178423368 - AluJo SINE Alu -182 130 1 1896 142 28 0 chr6 10857018 10857306 -178422248 + AluJb SINE Alu 1 296 -16 356 241 23 0 chr6 10857318 10857405 -178422149 + L2 LINE L2 3128 3216 -97 258 276 7 97 chr6 10857470 10857571 -178421983 - MIR SINE MIR -12 250 161 1754 161 0 37 chr6 10857571 10857914 -178421640 + AluJo SINE Alu 1 332 0 258 276 7 97 chr6 10857914 10857954 -178421600 - MIR SINE MIR -101 161 119 1579 112 22 9 chr6 10858008 10858240 -178421314 + AluSg/x SINE Alu 67 301 -9 1108 196 222 73 chr6 10858347 10858771 -178420783 - MLT1D LTR MaLR 0 505 19 717 238 38 131 chr6 10859120 10859479 -178420075 + L1MC4 LINE L1 7354 7660 -382 5167 18 0 17 chr6 10859479 10860081 -178419473 - L1PA4 LINE L1 -3 6152 5561 717 238 38 131 chr6 10860081 10860195 -178419359 + L1MC4 LINE L1 7660 7783 -259 284 243 0 0 chr6 10861239 10861313 -178418241 + L1MC4 LINE L1 7969 8042 0 2013 118 0 57 chr6 10861555 10861870 -178417684 - AluSq SINE Alu -16 297 1 275 264 132 7 chr6 10861972 10862116 -178417438 - L2 LINE L2 0 3313 3152 621 239 23 0 chr6 10862230 10862360 -178417194 + AluJo SINE Alu 1 133 -169 904 71 11 44 chr6 10862360 10862495 -178417059 + (GGAA)n Simple_repeat Simple_repeat 1 307 0 904 71 11 44 chr6 10862495 10862678 -178416876 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 1107 148 0 17 chr6 10862766 10862942 -178416612 + AluJo SINE Alu 129 301 -11 244 255 49 59 chr6 10863022 10863124 -178416430 - L2 LINE L2 -1087 2227 2127 1162 205 34 0 chr6 10863125 10863364 -178416190 - MLT1A1 LTR MaLR -3 362 116 1133 265 109 80 chr6 10863364 10863608 -178415946 - L2 LINE L2 -1214 2100 1865 1921 133 14 7 chr6 10863608 10863894 -178415660 + AluJb SINE Alu 2 289 -23 1898 117 67 3 chr6 10863901 10864184 -178415370 + AluSg SINE Alu 3 303 -7 1133 265 109 80 chr6 10864184 10864598 -178414956 - L2 LINE L2 -1454 1860 1414 375 65 0 0 chr6 10864607 10864653 -178414901 + MLT1B LTR MaLR 299 344 -46 2005 239 176 16 chr6 10864797 10865705 -178413849 + L2 LINE L2 333 1385 -1929 2035 113 11 4 chr6 10865707 10866015 -178413539 + AluSx SINE Alu 7 316 0 362 246 94 94 chr6 10866990 10867046 -178412508 + LTR50 LTR ERVL 480 535 -260 1480 216 56 50 chr6 10867046 10867395 -178412159 - MLT1C LTR MaLR 0 467 113 2392 67 0 22 chr6 10867395 10867708 -178411846 - AluSc SINE Alu -3 306 1 1480 216 56 50 chr6 10867708 10867820 -178411734 - MLT1C LTR MaLR -354 113 3 362 246 94 94 chr6 10867820 10868072 -178411482 + LTR50 LTR ERVL 534 788 -7 2011 122 4 0 chr6 10868125 10868403 -178411151 + AluSx SINE Alu 21 299 -13 746 205 43 43 chr6 10868421 10868496 -178411058 + FAM SINE Alu 11 85 -236 2251 140 69 15 chr6 10868496 10868851 -178410703 + MSTA LTR MaLR 1 382 -46 186 43 0 0 chr6 10868851 10868874 -178410680 + (TA)n Simple_repeat Simple_repeat 2 24 0 2251 140 69 15 chr6 10868874 10868924 -178410630 + MSTA LTR MaLR 382 428 0 746 205 43 43 chr6 10868924 10869009 -178410545 + FAM SINE Alu 84 171 -14 1538 214 214 55 chr6 10869228 10869296 -178410258 - MLT1E1 LTR MaLR 0 654 598 2093 122 14 0 chr6 10869296 10869583 -178409971 + AluSx SINE Alu 5 295 -17 1538 214 214 55 chr6 10869583 10870078 -178409476 - MLT1E1 LTR MaLR -56 598 1 550 353 40 15 chr6 10870412 10870684 -178408870 + ERVL LTR ERVL 775 1053 -4711 268 289 103 0 chr6 10871014 10871111 -178408443 - LTR40a LTR ERVL -6 513 407 360 304 47 28 chr6 10871576 10871790 -178407764 - MERVL LTR ERVL -458 5027 4810 644 362 8 0 chr6 10872067 10872324 -178407230 - MERVL LTR ERVL -1047 4438 4180 255 93 0 0 chr6 10872633 10872676 -178406878 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2486 174 6 222 chr6 10872874 10873328 -178406226 + L1M3 LINE L1 4363 4914 -1232 627 80 50 50 chr6 10873328 10873428 -178406126 + AluSg/x SINE Alu 188 287 -22 2486 174 6 222 chr6 10873428 10873898 -178405656 + L1M3 LINE L1 4914 5074 -1072 1695 190 0 3 chr6 10873898 10874193 -178405361 - AluJb SINE Alu -18 294 1 2486 174 6 222 chr6 10874193 10874407 -178405147 + L1M3 LINE L1 5074 5333 -813 647 163 8 47 chr6 10874407 10874507 -178405047 + FLAM_A SINE Alu 5 100 -211 2282 113 80 0 chr6 10874507 10874844 -178404710 + THE1B LTR MaLR 1 364 0 647 163 8 47 chr6 10874844 10874872 -178404682 + FLAM_A SINE Alu 100 128 -183 776 129 8 0 chr6 10874872 10874996 -178404558 + L1M3 LINE L1 5326 5450 -730 2380 286 48 11 chr6 10875516 10876246 -178403308 + ERVL LTR ERVL 287 1043 -3953 1325 220 104 31 chr6 10876303 10876717 -178402837 + MLT1C LTR MaLR 24 467 0 1752 295 48 28 chr6 10876717 10877847 -178401707 + ERVL LTR ERVL 1057 2273 -2723 598 285 69 97 chr6 10877932 10878005 -178401549 + ERVL LTR ERVL 2288 2362 -2634 1972 119 7 7 chr6 10878005 10878299 -178401255 - AluSx SINE Alu -18 294 1 598 285 69 97 chr6 10878299 10878677 -178400877 + ERVL LTR ERVL 2362 2726 -2270 1016 112 0 20 chr6 10879326 10879478 -178400076 + L1PA8 LINE L1 6021 6169 -3 243 156 67 0 chr6 10879483 10879528 -178400026 + MER58 DNA MER1_type 2373 2420 0 2173 94 0 10 chr6 10879679 10879978 -178399576 + AluSx SINE Alu 1 296 -16 1551 136 97 13 chr6 10879978 10880287 -178399267 + MER46B DNA MER2_type 27 236 0 5672 94 36 17 chr6 10880311 10881126 -178398428 - L1PA11 LINE L1 -2 6172 5343 2093 103 3 7 chr6 10881175 10881476 -178398078 - AluY SINE Alu -11 300 1 185 307 176 39 chr6 10881529 10881682 -178397872 + MIR SINE MIR 28 201 -61 338 326 39 8 chr6 10882051 10882180 -178397374 + AluJ SINE Alu 11 143 -159 5402 191 69 76 chr6 10882195 10883776 -178395778 - pTR5 LTR ERV1 -156 2173 31 743 194 84 19 chr6 10883777 10883932 -178395622 + AluJ SINE Alu 143 307 -5 1885 102 16 60 chr6 10884495 10884809 -178394745 + AluSx SINE Alu 5 304 -8 187 264 125 28 chr6 10884831 10884903 -178394651 + MIR SINE MIR 73 151 -111 810 174 12 12 chr6 10884904 10885065 -178394489 - FRAM SINE Alu -15 161 1 2568 214 104 6 chr6 10885077 10885749 -178393805 - L1MD2 LINE L1 -1 6358 5621 2114 99 17 3 chr6 10886251 10886544 -178393010 - AluSx SINE Alu -14 298 2 996 202 32 40 chr6 10886565 10886812 -178392742 + MLT2B1 LTR ERVL 2 246 -274 559 221 140 0 chr6 10886823 10886959 -178392595 - AluJo SINE Alu -41 271 117 1531 146 59 7 chr6 10886959 10887247 -178392307 + AluSq SINE Alu 1 303 -10 4227 152 93 56 chr6 10887346 10888793 -178390761 - pTR5 LTR ERV1 0 2438 743 281 198 23 23 chr6 10889179 10889265 -178390289 + (TA)n Simple_repeat Simple_repeat 1 86 0 200 200 0 0 chr6 10889381 10889426 -178390128 + (ATG)n Simple_repeat Simple_repeat 3 47 0 271 307 99 61 chr6 10889433 10889511 -178390043 - MIR SINE MIR -41 221 147 2304 144 15 15 chr6 10889511 10889901 -178389653 - MLT1B LTR MaLR 0 390 1 271 307 99 61 chr6 10889901 10890034 -178389520 - MIR SINE MIR -115 147 2 1915 141 3 95 chr6 10890549 10890918 -178388636 + MER1B DNA MER1_type 2 336 -1 2231 97 0 0 chr6 10891326 10891624 -178387930 - AluSx SINE Alu -14 298 1 321 292 102 15 chr6 10891846 10891978 -178387576 + MIR SINE MIR 2 143 -69 1474 200 143 83 chr6 10891982 10892733 -178386821 + pTR5 LTR ERV1 744 2050 -388 683 210 127 63 chr6 10892979 10893299 -178386255 + LTR12 LTR ERV1 236 690 -24 766 192 58 0 chr6 10893300 10893456 -178386098 - AluSq SINE Alu -15 298 134 1312 199 15 7 chr6 10893472 10893744 -178385810 - AluSq SINE Alu -39 274 1 576 202 57 16 chr6 10893746 10893870 -178385684 - AluJo/FLAM SINE Alu -171 131 3 1707 127 21 25 chr6 10894231 10894514 -178385040 + AluSx SINE Alu 1 282 -30 182 125 0 50 chr6 10895827 10895867 -178383687 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 2155 102 3 0 chr6 10896025 10896319 -178383235 - AluSq SINE Alu -18 295 1 2916 212 25 25 chr6 10897072 10897756 -178381798 - L1MD3 LINE L1 0 7995 7312 406 319 28 7 chr6 10898007 10898151 -178381403 + MIR SINE MIR 112 258 -4 2050 118 10 0 chr6 10898180 10898484 -178381070 + AluSg SINE Alu 1 307 -3 901 253 42 4 chr6 10898504 10898741 -178380813 + MIR SINE MIR 17 262 0 2311 94 0 0 chr6 10898861 10899170 -178380384 - AluY SINE Alu -2 309 1 1959 127 0 10 chr6 10899208 10899508 -178380046 - AluSx SINE Alu -15 297 1 1282 247 49 45 chr6 10899587 10900010 -178379544 - L1ME2 LINE L1 -6 6227 5800 1435 141 130 0 chr6 10900010 10900272 -178379282 - AluSg1 SINE Alu -13 296 1 1282 247 49 45 chr6 10900272 10900362 -178379192 - L1ME2 LINE L1 -433 5800 5712 784 244 39 19 chr6 10900363 10900568 -178378986 - MER82 DNA MER2_type -1 652 444 2118 92 7 16 chr6 10900595 10900901 -178378653 + AluSx SINE Alu 1 303 -9 254 182 36 0 chr6 10901016 10901071 -178378483 + L1M4 LINE L1 2774 2830 -3316 383 237 32 0 chr6 10901201 10901294 -178378260 - MER82 DNA MER2_type -557 96 1 1032 271 37 9 chr6 10901294 10901615 -178377939 - L1ME2 LINE L1 -525 5710 5381 520 54 68 0 chr6 10901657 10901731 -178377823 + L1PA11 LINE L1 6095 6173 -1 1499 244 13 18 chr6 10901733 10902183 -178377371 - L1ME2 LINE L1 -2925 3290 2843 696 129 54 82 chr6 10902186 10902333 -178377221 - MSTB2 LTR MaLR -55 402 260 434 203 16 47 chr6 10902362 10902433 -178377121 - L1ME2 LINE L1 -3388 2827 2760 2066 122 3 0 chr6 10902433 10902737 -178376817 - AluSx SINE Alu -7 305 1 434 203 16 47 chr6 10902737 10902793 -178376761 - L1ME2 LINE L1 -3455 2760 2704 1710 262 27 10 chr6 10902845 10903330 -178376224 - L1ME2 LINE L1 -5780 616 124 1897 151 0 7 chr6 10904016 10904315 -178375239 + AluJb SINE Alu 1 297 -15 864 149 6 43 chr6 10904408 10904569 -178374985 + AluJb SINE Alu 143 297 -15 326 298 48 0 chr6 10904580 10904684 -178374870 + MER103 DNA DNA 13 121 -45 406 227 9 18 chr6 10905333 10905443 -178374111 - L1ME4a LINE L1 -67 6054 5946 2133 111 0 0 chr6 10905476 10905773 -178373781 + AluSx SINE Alu 1 297 -15 655 216 0 8 chr6 10905877 10906002 -178373552 + FLAM_C SINE Alu 2 125 -18 2287 105 0 0 chr6 10906453 10906757 -178372797 + AluSx SINE Alu 1 304 -8 221 56 0 28 chr6 10906757 10906793 -178372761 + (TA)n Simple_repeat Simple_repeat 1 35 0 1000 212 37 8 chr6 10906956 10907197 -178372357 + L1MB7 LINE L1 5928 6175 -9 346 326 17 65 chr6 10907221 10907462 -178372092 - MIR SINE MIR -24 238 12 186 179 0 0 chr6 10907545 10907573 -178371981 - L2 LINE L2 -21 3251 3224 977 184 0 22 chr6 10907586 10907765 -178371789 - FAM SINE Alu 0 175 1 1179 161 5 0 chr6 10907847 10908040 -178371514 + MER20 DNA MER1_type 26 219 0 1567 168 20 7 chr6 10908218 10908515 -178371039 + L1MB2 LINE L1 5864 6164 -7 2138 108 0 7 chr6 10908530 10908837 -178370717 + AluSx SINE Alu 5 309 -3 307 53 0 0 chr6 10909070 10909108 -178370446 + tRNA-Gln-CAG tRNA tRNA 1 38 -37 269 285 122 16 chr6 10909624 10909747 -178369807 + MIR3 SINE MIR 56 191 -17 27 0 0 0 chr6 10909780 10909807 -178369747 + AT_rich Low_complexity Low_complexity 1 27 0 2366 137 6 3 chr6 10909849 10910208 -178369346 - MER46B DNA MER2_type 0 236 2 2063 130 0 0 chr6 10910291 10910590 -178368964 + AluSx SINE Alu 1 299 -13 692 308 71 5 chr6 10911287 10911511 -178368043 - MIR SINE MIR -3 259 21 1576 209 30 6 chr6 10911659 10911989 -178367565 - MER58B DNA MER1_type -3 338 1 2369 153 37 19 chr6 10912090 10912521 -178367033 + L1MA6 LINE L1 5862 6300 0 286 333 116 21 chr6 10912555 10912744 -178366810 - L2 LINE L2 -113 3159 2953 780 143 42 0 chr6 10912776 10912895 -178366659 + FLAM_C SINE Alu 2 125 -18 2117 92 3 0 chr6 10912900 10913213 -178366341 - AluSp SINE Alu 0 314 1 2096 73 0 4 chr6 10913314 10913589 -178365965 - AluY SINE Alu -20 291 18 362 266 32 63 chr6 10913671 10913755 -178365799 - L2 LINE L2 0 3313 3235 2131 100 3 3 chr6 10913755 10914055 -178365499 + AluSq SINE Alu 1 300 -13 362 266 32 63 chr6 10914055 10914128 -178365426 - L2 LINE L2 -78 3235 3161 25 0 0 0 chr6 10918293 10918318 -178361236 + GC_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr6 10918920 10918940 -178360614 + (T)n Simple_repeat Simple_repeat 1 20 0 2178 94 4 0 chr6 10926310 10926587 -178352967 + AluSg SINE Alu 1 278 -32 24 67 0 0 chr6 10928498 10928543 -178351011 + AT_rich Low_complexity Low_complexity 1 45 0 33 25 0 0 chr6 10930131 10930171 -178349383 + AT_rich Low_complexity Low_complexity 1 40 0 200 35 35 0 chr6 10930663 10930692 -178348862 + (GA)n Simple_repeat Simple_repeat 2 31 0 27 62 0 0 chr6 10930891 10930939 -178348615 + AT_rich Low_complexity Low_complexity 1 48 0 24 63 0 16 chr6 10931442 10931492 -178348062 + AT_rich Low_complexity Low_complexity 1 51 -11 190 28 28 56 chr6 10931492 10931528 -178348026 + (TTG)n Simple_repeat Simple_repeat 2 36 0 24 63 0 16 chr6 10931528 10931540 -178348014 + AT_rich Low_complexity Low_complexity 51 62 0 294 143 0 0 chr6 10931722 10931771 -178347783 + (CAG)n Simple_repeat Simple_repeat 3 51 0 225 0 0 0 chr6 10933343 10933368 -178346186 + (TC)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr6 10933367 10933392 -178346162 + (TG)n Simple_repeat Simple_repeat 2 26 0 34 24 0 0 chr6 10937912 10937953 -178341601 + GC_rich Low_complexity Low_complexity 1 41 0 252 86 0 0 chr6 10940930 10940965 -178338589 + (T)n Simple_repeat Simple_repeat 1 35 0 210 236 0 0 chr6 10945622 10945677 -178333877 + (CGAG)n Simple_repeat Simple_repeat 2 56 0 292 317 0 48 chr6 10945753 10945920 -178333634 + GA-rich Low_complexity Low_complexity 4 162 0 186 263 0 0 chr6 10945987 10946044 -178333510 + C-rich Low_complexity Low_complexity 1 57 0 217 227 0 0 chr6 10946047 10946091 -178333463 + T-rich Low_complexity Low_complexity 4 47 0 305 165 0 52 chr6 10946117 10946214 -178333340 + CT-rich Low_complexity Low_complexity 1 92 0 369 279 13 56 chr6 10946331 10946583 -178332971 + CT-rich Low_complexity Low_complexity 1 241 0 182 114 0 29 chr6 10946723 10946758 -178332796 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 231 125 0 0 chr6 10946774 10946814 -178332740 + (AGGGGG)n Simple_repeat Simple_repeat 5 44 0 255 31 0 0 chr6 10948711 10948743 -178330811 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 762 130 0 0 chr6 10949337 10949468 -178330086 + (GGA)n Simple_repeat Simple_repeat 3 133 0 23 0 0 0 chr6 10953434 10953457 -178326097 + GC_rich Low_complexity Low_complexity 1 23 0 240 188 0 0 chr6 10954457 10954505 -178325049 + (CA)n Simple_repeat Simple_repeat 2 49 0 438 301 133 35 chr6 10955904 10956107 -178323447 + MIR SINE MIR 31 253 -9 387 0 0 0 chr6 10957845 10957888 -178321666 + (TG)n Simple_repeat Simple_repeat 2 44 0 419 301 18 0 chr6 10959275 10959388 -178320166 + MER5B DNA MER1_type 1 115 -63 388 168 0 62 chr6 10963217 10963330 -178316224 + L1PA11 LINE L1 6068 6173 -1 180 306 16 16 chr6 10964325 10964387 -178315167 + L3 LINE CR1 1513 1574 -3 2014 126 49 0 chr6 10964719 10965004 -178314550 - AluSx SINE Alu -13 299 1 396 256 0 0 chr6 10965068 10965154 -178314400 + MLT1L LTR MaLR 69 154 -461 481 310 12 23 chr6 10965749 10965920 -178313634 + MIR3 SINE MIR 25 193 -15 180 205 0 51 chr6 10965886 10965925 -178313629 + L3 LINE CR1 1535 1571 -6 * 1686 177 27 17 chr6 10966092 10966392 -178313162 - AluJo SINE Alu -9 303 1 2420 85 0 3 chr6 10966643 10966948 -178312606 - AluSq SINE Alu -8 305 2 430 242 0 0 chr6 10967010 10967109 -178312445 - FLAM_C SINE Alu 0 143 45 750 279 135 53 chr6 10967441 10967919 -178311635 - L2 LINE L2 0 3313 2757 2446 81 0 0 chr6 10967919 10968214 -178311340 + AluSq SINE Alu 1 295 -18 750 279 135 53 chr6 10968214 10968368 -178311186 - L2 LINE L2 -556 2757 2617 776 266 76 10 chr6 10968372 10968662 -178310892 - L2 LINE L2 -1109 2205 1897 209 287 87 17 chr6 10968746 10968850 -178310704 + MIR SINE MIR 92 206 -56 1480 186 54 61 chr6 10968850 10969242 -178310312 - MLT1B LTR MaLR -1 389 1 2406 68 0 0 chr6 10969562 10969871 -178309683 - AluSg SINE Alu 0 309 1 271 75 0 0 chr6 10970397 10970437 -178309117 - Alu SINE Alu -4 297 258 1323 51 0 6 chr6 10970437 10970593 -178308961 - AluY SINE Alu -156 155 1 949 291 75 0 chr6 10970595 10970966 -178308588 + L1MC4a LINE L1 5514 5912 -1896 851 176 0 0 chr6 10971132 10971263 -178308291 - FLAM_C SINE Alu -2 131 1 1944 142 0 10 chr6 10971276 10971602 -178307952 - AluSx SINE Alu 0 323 1 602 242 52 41 chr6 10971605 10972047 -178307507 - L1M4 LINE L1 -2848 3298 2852 230 163 0 0 chr6 10972072 10972115 -178307439 - L1MA9 LINE L1 -10 6302 6260 586 227 67 0 chr6 10972217 10972367 -178307187 - MLT1J LTR MaLR -113 398 239 266 283 11 33 chr6 10972393 10972485 -178307069 - MLT1J LTR MaLR -338 173 84 1589 160 93 4 chr6 10972534 10972803 -178306751 + AluJb SINE Alu 4 296 -16 695 136 0 97 chr6 10973194 10973348 -178306206 - L1MA9 LINE L1 -37 6275 6137 2316 113 0 0 chr6 10973349 10973650 -178305904 - AluSx SINE Alu -11 301 1 1083 237 147 25 chr6 10974272 10974707 -178304847 + L1MC4 LINE L1 7554 8041 -1 262 250 20 30 chr6 10974689 10974789 -178304765 + L1M4 LINE L1 5033 5131 -1015 * 26 0 0 0 chr6 10974988 10975014 -178304540 + AT_rich Low_complexity Low_complexity 1 26 0 2104 111 0 7 chr6 10975068 10975366 -178304188 - AluSg SINE Alu -12 298 3 620 193 0 18 chr6 10975367 10975481 -178304073 + Tigger2 DNA MER2_type 2597 2708 -10 1909 113 3 7 chr6 10976763 10977083 -178302471 - AluSq SINE Alu 0 319 1 225 0 0 0 chr6 10977085 10977110 -178302444 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2153 97 3 7 chr6 10977113 10977422 -178302132 - AluSg SINE Alu -2 308 1 2073 97 3 22 chr6 10977665 10977976 -178301578 - AluSq SINE Alu -8 305 1 1749 137 43 4 chr6 10978935 10979213 -178300341 + AluSx SINE Alu 10 298 -14 276 231 62 15 chr6 10979491 10979556 -178299998 - L2 LINE L2 -4 3309 3242 264 240 132 66 chr6 10980339 10980460 -178299094 + MIR3 SINE MIR 2 130 -78 816 150 8 8 chr6 10980615 10980748 -178298806 + FLAM_A SINE Alu 1 133 0 1974 131 24 0 chr6 10980827 10981125 -178298429 - AluSx SINE Alu -7 305 1 2218 90 3 10 chr6 10981139 10981451 -178298103 - AluSp SINE Alu 0 313 4 2102 108 13 3 chr6 10981458 10981763 -178297791 - AluSx SINE Alu -4 308 1 315 228 67 40 chr6 10981794 10981943 -178297611 + L1ME4a LINE L1 5968 6120 -1 1991 102 14 10 chr6 10982666 10982961 -178296593 + AluSx SINE Alu 1 296 -16 312 226 157 57 chr6 10982994 10983153 -178296401 + L1ME LINE L1 5525 5699 -422 2305 87 3 3 chr6 10983252 10983563 -178295991 + AluY SINE Alu 1 311 0 288 0 0 0 chr6 10983570 10983602 -178295952 + (TA)n Simple_repeat Simple_repeat 2 33 0 315 274 104 7 chr6 10983948 10984083 -178295471 - MIR SINE MIR -56 206 59 211 337 12 12 chr6 10984246 10984329 -178295225 + MIR SINE MIR 8 90 -172 792 234 60 5 chr6 10984361 10984545 -178295009 + MIR SINE MIR 2 195 -67 833 292 129 15 chr6 10984576 10985032 -178294522 - L2 LINE L2 -4 3309 2794 2380 138 82 30 chr6 10985132 10985558 -178293996 + MER83 LTR ERV1 1 448 0 1639 183 14 0 chr6 10986101 10986386 -178293168 - AluJb SINE Alu -23 289 1 791 134 0 0 chr6 10986842 10986954 -178292600 + FLAM_C SINE Alu 14 125 -18 1511 203 10 0 chr6 10986970 10987265 -178292289 + AluJo SINE Alu 1 298 -14 193 351 206 15 chr6 10988789 10988920 -178290634 + L2 LINE L2 3109 3264 -8 297 0 0 0 chr6 10989028 10989061 -178290493 + (CA)n Simple_repeat Simple_repeat 1 33 0 897 185 7 0 chr6 10989121 10989272 -178290282 - FRAM SINE Alu -14 152 1 645 126 42 7 chr6 10989608 10989751 -178289803 + CT-rich Low_complexity Low_complexity 1 148 0 1307 175 130 0 chr6 10989751 10990020 -178289534 - AluJb SINE Alu -7 305 2 290 282 45 18 chr6 10990804 10990914 -178288640 - MIR3 SINE MIR 0 208 96 2059 105 0 17 chr6 10991145 10991439 -178288115 - AluSq SINE Alu -24 289 1 581 216 18 0 chr6 10991815 10991926 -178287628 - MER81 DNA DNA 0 114 2 2326 66 0 34 chr6 10992228 10992548 -178287006 + AluY SINE Alu 1 309 -2 180 239 60 30 chr6 10992715 10992782 -178286772 + MIR SINE MIR 50 118 -90 296 305 91 39 chr6 10993357 10993511 -178286043 - MIR SINE MIR -99 163 2 486 313 0 43 chr6 10993813 10993976 -178285578 - MIR SINE MIR -13 249 94 349 268 71 9 chr6 10994103 10994215 -178285339 - MIR SINE MIR -52 210 92 352 227 107 0 chr6 10994413 10994488 -178285066 + MER58B DNA MER1_type 1 83 -258 1352 102 0 10 chr6 10995153 10995349 -178284205 - AluSq SINE Alu -11 302 109 2782 62 5 19 chr6 10995349 10995848 -178283706 + LTR7 LTR ERV1 1 448 -2 900 78 0 0 chr6 10995848 10995963 -178283591 - AluSq SINE Alu -197 115 1 944 192 120 17 chr6 10995963 10996197 -178283357 + MER58B DNA MER1_type 84 341 0 1377 175 98 7 chr6 10996574 10996690 -178282864 + AluJo SINE Alu 1 105 -207 189 74 0 0 chr6 10996690 10996717 -178282837 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1377 175 98 7 chr6 10996717 10996886 -178282668 + AluJo SINE Alu 105 312 0 214 239 109 43 chr6 10996918 10997010 -178282544 + MIR SINE MIR 82 179 -83 2127 125 0 0 chr6 10997306 10997617 -178281937 - AluSq SINE Alu -2 311 1 323 89 54 18 chr6 10997649 10997705 -178281849 + MER6 DNA MER2_type 483 540 -325 1734 301 51 27 chr6 10997816 10998916 -178280638 + HERV16 LTR ERVL 1088 2273 -2723 605 284 70 96 chr6 10998996 10999074 -178280480 + HERV16 LTR ERVL 2282 2361 -2635 1972 119 7 7 chr6 10999074 10999368 -178280186 - AluSx SINE Alu -18 294 1 605 284 70 96 chr6 10999368 10999746 -178279808 + HERV16 LTR ERVL 2361 2726 -2270 1016 112 0 20 chr6 11000392 11000544 -178279010 + L1PA8 LINE L1 6021 6169 -3 243 156 67 0 chr6 11000549 11000594 -178278960 + MER58B DNA MER1_type 294 341 0 2173 94 0 10 chr6 11000745 11001044 -178278510 + AluSx SINE Alu 1 296 -16 1551 136 97 13 chr6 11001044 11001353 -178278201 + MER46B DNA MER2_type 27 236 0 5698 100 27 17 chr6 11001377 11002199 -178277355 - L1PA11 LINE L1 -2 6172 5343 2113 99 3 7 chr6 11002248 11002550 -178277004 - AluY SINE Alu -10 301 1 188 307 176 39 chr6 11002603 11002756 -178276798 + MIR SINE MIR 28 201 -61 349 318 39 8 chr6 11003124 11003253 -178276301 + AluJ SINE Alu 11 143 -159 5360 195 69 76 chr6 11003268 11004850 -178274704 - pTR5 LTR ERV1 -156 2173 31 751 192 83 19 chr6 11004850 11005006 -178274548 + AluJ SINE Alu 142 307 -5 1910 99 16 60 chr6 11005569 11005883 -178273671 + AluSx SINE Alu 5 304 -8 187 264 125 28 chr6 11005905 11005977 -178273577 + MIR SINE MIR 73 151 -111 815 174 12 12 chr6 11005978 11006139 -178273415 - FRAM SINE Alu -15 161 1 2537 221 104 7 chr6 11006151 11006849 -178272705 - L1MD2 LINE L1 -1 6358 5589 2079 92 17 10 chr6 11007323 11007617 -178271937 - AluSx SINE Alu -14 298 3 236 232 0 0 chr6 11007620 11007676 -178271878 - L1MEc LINE L1 -3456 2759 2704 1696 264 27 10 chr6 11007728 11008213 -178271341 - L1MEc LINE L1 -5780 616 124 1911 147 0 7 chr6 11008899 11009198 -178270356 + AluJb SINE Alu 1 297 -15 864 149 6 43 chr6 11009291 11009452 -178270102 + AluJb SINE Alu 143 297 -15 326 298 48 0 chr6 11009463 11009567 -178269987 + MER103 DNA DNA 13 121 -45 406 227 9 18 chr6 11010217 11010327 -178269227 - L1ME4a LINE L1 -67 6054 5946 2133 111 0 0 chr6 11010360 11010657 -178268897 + AluSx SINE Alu 1 297 -15 625 214 0 16 chr6 11010761 11010887 -178268667 + FLAM_C SINE Alu 2 125 -18 2272 109 0 0 chr6 11011343 11011647 -178267907 + AluSx SINE Alu 1 304 -8 239 53 0 26 chr6 11011647 11011685 -178267869 + (TA)n Simple_repeat Simple_repeat 2 38 0 35 41 0 0 chr6 11012040 11012089 -178267465 + GC_rich Low_complexity Low_complexity 1 49 0 23 54 0 0 chr6 11012106 11012143 -178267411 + GC_rich Low_complexity Low_complexity 1 37 0 611 234 21 0 chr6 11012232 11012373 -178267181 - AluJo SINE Alu -126 186 43 189 74 0 0 chr6 11012554 11012581 -178266973 + (T)n Simple_repeat Simple_repeat 1 27 0 2167 99 3 10 chr6 11012671 11012975 -178266579 + AluSx SINE Alu 1 302 -10 546 150 0 79 chr6 11013026 11013153 -178266401 - Charlie5 DNA MER1_type 0 2624 2508 1917 126 0 41 chr6 11013153 11013470 -178266084 + AluSx SINE Alu 2 305 -7 356 141 113 0 chr6 11013470 11013541 -178266013 + L1ME2 LINE L1 2680 2758 -3388 696 129 54 82 chr6 11013570 11013717 -178265837 + MSTB2 LTR MaLR 260 402 -55 1521 242 14 16 chr6 11013720 11014158 -178265396 + L1ME2 LINE L1 2774 3210 -2936 520 54 68 0 chr6 11014173 11014247 -178265307 - L1PA11 LINE L1 -1 6173 6095 1046 268 37 9 chr6 11014289 11014610 -178264944 + L1ME2 LINE L1 5312 5641 -525 383 237 32 0 chr6 11014610 11014703 -178264851 + MER82 DNA MER2_type 1 96 -557 274 164 36 0 chr6 11014833 11014888 -178264666 - L1M4 LINE L1 -3316 2830 2774 2126 91 7 16 chr6 11015003 11015310 -178264244 - AluSx SINE Alu -8 304 1 784 244 39 19 chr6 11015337 11015542 -178264012 + MER82 DNA MER2_type 444 652 -1 1264 246 48 50 chr6 11015543 11015636 -178263918 + L1ME2 LINE L1 5643 5735 -429 1406 145 130 0 chr6 11015636 11015898 -178263656 + AluSg1 SINE Alu 1 296 -13 1264 246 48 50 chr6 11015898 11016321 -178263233 + L1ME2 LINE L1 5735 6158 -6 1956 127 0 10 chr6 11016400 11016700 -178262854 + AluSx SINE Alu 1 297 -15 2217 101 0 3 chr6 11016739 11017047 -178262507 + AluSg SINE Alu 1 307 -3 180 0 0 0 chr6 11017049 11017069 -178262485 + (TA)n Simple_repeat Simple_repeat 2 21 0 417 278 127 58 chr6 11017739 11017792 -178261762 + MIR SINE MIR 32 80 -182 2321 88 3 0 chr6 11017792 11018100 -178261454 - AluSp SINE Alu -4 309 1 417 278 127 58 chr6 11018100 11018251 -178261303 + MIR SINE MIR 80 250 -12 1716 144 34 7 chr6 11018415 11018707 -178260847 + AluJb SINE Alu 1 300 -12 334 127 28 14 chr6 11018707 11018778 -178260776 + GA-rich Low_complexity Low_complexity 1 72 0 3679 86 48 11 chr6 11019617 11020154 -178259400 - L1PA11 LINE L1 -2 6172 5616 2170 194 88 10 chr6 11020987 11021508 -178258046 - L1MB7 LINE L1 -16 6168 5607 2337 93 0 0 chr6 11021508 11021821 -178257733 - AluSq SINE Alu 0 313 1 555 165 0 0 chr6 11021821 11021906 -178257648 + Tigger5 DNA MER2_type 2239 2323 0 1626 98 9 0 chr6 11022176 11022400 -178257154 + AluSq SINE Alu 1 226 -87 1035 83 0 0 chr6 11022400 11022533 -178257021 + AluSg/x SINE Alu 163 295 -15 2083 102 0 17 chr6 11022586 11022880 -178256674 + AluSq SINE Alu 1 289 -24 290 282 45 18 chr6 11023112 11023222 -178256332 + MIR3 SINE MIR 96 208 0 1307 175 130 0 chr6 11024005 11024274 -178255280 + AluJb SINE Alu 2 305 -7 635 133 42 7 chr6 11024274 11024417 -178255137 + GA-rich Low_complexity Low_complexity 1 148 0 897 185 7 0 chr6 11024753 11024904 -178254650 + FRAM SINE Alu 1 152 -14 351 0 0 0 chr6 11024964 11025003 -178254551 + (TG)n Simple_repeat Simple_repeat 1 39 0 195 152 0 0 chr6 11026075 11026121 -178253433 + G-rich Low_complexity Low_complexity 1 46 0 180 185 0 0 chr6 11026135 11026189 -178253365 + (TGGG)n Simple_repeat Simple_repeat 2 55 0 234 220 0 44 chr6 11026211 11026302 -178253252 + G-rich Low_complexity Low_complexity 2 88 0 2224 95 13 0 chr6 11026998 11027302 -178252252 - AluSp SINE Alu -5 308 1 519 259 36 18 chr6 11027825 11027991 -178251563 - MLT1K LTR MaLR -7 581 413 301 260 0 0 chr6 11027995 11028072 -178251482 + MER81 DNA DNA 1 77 -37 389 323 103 5 chr6 11028081 11028276 -178251278 - MLT1K LTR MaLR -164 424 211 1215 158 5 0 chr6 11028276 11028478 -178251076 + AluJo SINE Alu 1 203 -109 246 32 0 0 chr6 11028497 11028528 -178251026 + (A)n Simple_repeat Simple_repeat 1 31 0 1786 134 14 0 chr6 11028748 11029024 -178250530 + AluSx SINE Alu 32 311 -1 2056 112 20 0 chr6 11029336 11029630 -178249924 - AluSx SINE Alu -12 300 1 992 180 20 10 chr6 11029861 11030061 -178249493 + AluJo SINE Alu 87 288 -24 2283 96 0 0 chr6 11030098 11030399 -178249155 + AluSx SINE Alu 3 303 -9 324 237 155 21 chr6 11031861 11031958 -178247596 + L2 LINE L2 3204 3313 0 22 56 0 0 chr6 11032081 11032117 -178247437 + AT_rich Low_complexity Low_complexity 1 36 0 213 309 0 53 chr6 11033064 11033158 -178246396 + MIR SINE MIR 58 146 -116 1869 141 0 3 chr6 11033765 11034056 -178245498 - AluSx SINE Alu -22 290 1 288 333 116 21 chr6 11034087 11034276 -178245278 + L2 LINE L2 2953 3159 -113 2136 167 52 19 chr6 11034310 11034735 -178244819 - L1MA6 LINE L1 0 6300 5862 239 357 21 17 chr6 11034835 11035070 -178244484 + MER58 DNA MER1_type 1 236 -2184 21 91 0 0 chr6 11035270 11035314 -178244240 + GC_rich Low_complexity Low_complexity 1 44 0 623 115 0 0 chr6 11035463 11035550 -178244004 - AluS SINE Alu -224 88 2 295 208 56 28 chr6 11035709 11035781 -178243773 + MIR SINE MIR 58 131 -131 1316 183 65 1 chr6 11035797 11036088 -178243466 + L1M4 LINE L1 5307 5617 -567 1716 128 53 18 chr6 11036092 11036374 -178243180 + AluSx SINE Alu 1 292 -20 2158 88 3 3 chr6 11036375 11036672 -178242882 + AluSp SINE Alu 1 297 -16 1493 80 10 0 chr6 11037240 11037440 -178242114 + AluSp SINE Alu 22 223 -90 335 43 0 0 chr6 11037440 11037487 -178242067 + AluSp SINE Alu 256 302 -1 1403 184 20 30 chr6 11037499 11037798 -178241756 + AluJo SINE Alu 1 296 -16 212 281 52 31 chr6 11038705 11038801 -178240753 - MIR3 SINE MIR -44 164 67 1965 130 0 37 chr6 11038978 11039302 -178240252 - AluSx SINE Alu 0 312 1 1890 136 0 3 chr6 11039314 11039623 -178239931 - AluSx SINE Alu 0 308 1 1948 120 3 13 chr6 11039685 11039993 -178239561 + AluSg SINE Alu 1 305 -5 311 326 44 30 chr6 11040837 11040972 -178238582 - L2 LINE L2 -18 3295 3159 412 311 101 8 chr6 11040972 11041268 -178238286 - L2 LINE L2 -225 3047 2717 1586 137 11 8 chr6 11041279 11041541 -178238013 - AluSx SINE Alu -12 300 38 1374 147 13 4 chr6 11041541 11041766 -178237788 + AluSq SINE Alu 64 290 -23 2089 101 0 3 chr6 11042414 11042700 -178236854 - AluSg SINE Alu -17 293 9 347 248 24 48 chr6 11044263 11044388 -178235166 - MIR SINE MIR -135 127 6 509 245 123 18 chr6 11044611 11044774 -178234780 + MIR SINE MIR 82 261 -1 1631 176 0 13 chr6 11045214 11045526 -178234028 + AluSx SINE Alu 1 308 -4 888 168 5 47 chr6 11046802 11046993 -178232561 - AluSg SINE Alu -17 295 113 7082 170 121 38 chr6 11047011 11048655 -178230899 - pTR5 LTR ERV1 -9 2429 108 2920 212 77 64 chr6 11048655 11049963 -178229591 + LTR12 LTR ERV1 2 714 0 639 138 32 0 chr6 11049963 11050057 -178229497 - AluSg SINE Alu -199 111 15 1710 190 66 29 chr6 11050219 11050650 -178228904 + LTR10E LTR ERV1 161 602 0 1576 167 4 4 chr6 11050650 11050914 -178228640 - AluSx SINE Alu -48 264 1 236 330 117 0 chr6 11051208 11051302 -178228252 - MIR SINE MIR -59 149 45 1161 123 11 0 chr6 11051303 11051482 -178228072 + AluSg/x SINE Alu 123 303 -9 2597 211 90 4 chr6 11051482 11052342 -178227212 + L1MD1 LINE L1 2389 3316 -3224 1369 192 16 0 chr6 11052403 11052658 -178226896 + AluJb SINE Alu 6 264 -48 1961 219 25 0 chr6 11052737 11053213 -178226341 + L1MB8 LINE L1 4338 4825 -1321 639 39 0 0 chr6 11053214 11053291 -178226263 + AluS SINE Alu 2 78 -235 3452 180 46 42 chr6 11053315 11053774 -178225780 + L1MB8 LINE L1 5386 5851 -327 2287 89 0 0 chr6 11053774 11054078 -178225476 + AluSq SINE Alu 2 305 -8 3452 180 46 42 chr6 11054078 11054408 -178225146 + L1MB8 LINE L1 5851 6178 0 472 200 0 12 chr6 11054423 11054508 -178225046 + FLAM_A SINE Alu 33 116 -26 768 164 0 0 chr6 11054648 11054770 -178224784 + FLAM_C SINE Alu 2 123 -10 666 173 56 26 chr6 11054787 11054907 -178224647 + L1MD1 LINE L1 3467 3582 -2958 2048 119 3 0 chr6 11054907 11055210 -178224344 - AluSq SINE Alu -8 305 2 666 173 56 26 chr6 11055210 11055320 -178224234 + L1MD1 LINE L1 3582 3704 -2836 1588 234 90 11 chr6 11055329 11055697 -178223857 + L1MD1 LINE L1 4379 4793 -1747 2129 110 0 10 chr6 11055697 11056006 -178223548 + AluSg SINE Alu 1 306 -4 1588 234 90 11 chr6 11056006 11056106 -178223448 + L1MD1 LINE L1 4793 4884 -1656 2069 117 7 0 chr6 11056109 11056418 -178223136 + AluSq SINE Alu 1 311 -2 390 159 0 155 chr6 11056431 11056531 -178223023 + MER7A DNA MER2_type 1 80 -266 * 806 173 29 0 chr6 11056518 11056657 -178222897 + MER7A DNA MER2_type 194 336 0 2001 187 85 25 chr6 11056663 11057309 -178222245 + L1MD1 LINE L1 5007 5613 -1140 2203 104 0 13 chr6 11057309 11057617 -178221937 + AluSx SINE Alu 1 304 -8 2001 187 85 25 chr6 11057617 11058459 -178221095 + L1MD1 LINE L1 5613 6753 0 1063 181 75 4 chr6 11058687 11058913 -178220641 - AluJo SINE Alu -8 304 63 1065 71 0 0 chr6 11058915 11059055 -178220499 + AluSg/x SINE Alu 166 305 -7 24 0 0 0 chr6 11059498 11059522 -178220032 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 11059536 11059558 -178219996 + AT_rich Low_complexity Low_complexity 1 22 0 1932 65 0 4 chr6 11060340 11060588 -178218966 + L1PA4 LINE L1 5909 6155 0 2566 167 11 23 chr6 11060588 11061062 -178218492 + L1MB7 LINE L1 5663 6130 -54 448 286 131 6 chr6 11062079 11062197 -178217357 + L2 LINE L2 2550 2698 -616 2221 101 0 28 chr6 11062197 11062515 -178217039 - AluSg SINE Alu -1 309 1 448 286 131 6 chr6 11062515 11062571 -178216983 + L2 LINE L2 2698 2746 -568 405 243 10 10 chr6 11062574 11062677 -178216877 + L1MC5 LINE L1 7758 7860 -101 604 301 251 5 chr6 11062765 11063144 -178216410 + L2 LINE L2 2842 3313 0 212 273 121 20 chr6 11063379 11063478 -178216076 + MIR3 SINE MIR 5 113 -95 2119 85 18 0 chr6 11063793 11064075 -178215479 - AluSc SINE Alu -22 287 1 1833 122 7 14 chr6 11064793 11065132 -178214422 + AluSx SINE Alu 1 337 0 1847 103 139 48 chr6 11065307 11065638 -178213916 - MER46B DNA MER2_type 0 236 1 2300 58 3 42 chr6 11066013 11066325 -178213229 + AluY SINE Alu 1 300 -11 1843 161 0 19 chr6 11066849 11067165 -178212389 - AluJb SINE Alu -2 310 1 1928 131 68 14 chr6 11067635 11067741 -178211813 + L1PA11 LINE L1 5803 5902 -272 2109 126 3 0 chr6 11067741 11068051 -178211503 + AluSx SINE Alu 1 311 -1 1928 131 68 14 chr6 11068051 11068296 -178211258 + L1PA11 LINE L1 5902 6173 -1 893 206 84 73 chr6 11068595 11068760 -178210794 + MLT1A1 LTR MaLR 1 163 -202 2070 81 4 0 chr6 11068760 11069032 -178210522 + AluSx SINE Alu 1 273 -39 893 206 84 73 chr6 11069032 11069320 -178210234 + MLT1A1 LTR MaLR 163 362 -3 225 359 65 22 chr6 11069651 11069882 -178209672 + L2 LINE L2 733 973 -2341 2070 122 0 3 chr6 11069887 11070199 -178209355 - AluY SINE Alu 0 311 1 275 289 173 0 chr6 11070645 11070749 -178208805 + MIR SINE MIR 13 134 -128 267 273 40 100 chr6 11071026 11071176 -178208378 + L2 LINE L2 2952 3092 -180 1734 121 71 11 chr6 11071211 11071492 -178208062 - AluSx SINE Alu -14 298 1 312 216 95 0 chr6 11072192 11072266 -178207288 - L2 LINE L2 0 3313 3233 1261 122 48 0 chr6 11072267 11072455 -178207099 - AluSq SINE Alu -114 199 3 492 218 57 104 chr6 11072913 11073106 -178206448 + MIR SINE MIR 3 186 -76 2391 73 3 7 chr6 11074838 11075141 -178204413 - AluSp SINE Alu -11 302 1 1133 188 5 0 chr6 11075175 11075383 -178204171 + AluJb SINE Alu 87 295 -17 1381 125 44 36 chr6 11075724 11075972 -178203582 - LTR10E LTR ERV1 -21 612 363 1220 46 10 34 chr6 11075972 11076170 -178203384 - LTR10E LTR ERV1 -381 252 2 513 120 0 0 chr6 11076295 11076370 -178203184 + AluS SINE Alu 2 76 -236 1893 78 90 15 chr6 11076396 11076664 -178202890 + AluSc SINE Alu 1 288 -21 1838 200 95 27 chr6 11077461 11077912 -178201642 + LTR2B LTR ERV1 9 490 0 235 86 0 0 chr6 11078443 11078478 -178201076 - L2 LINE L2 0 3313 3279 731 218 147 107 chr6 11079229 11079679 -178199875 - MLT1J LTR MaLR -43 468 1 357 224 0 0 chr6 11079779 11079846 -178199708 - MER2 DNA MER2_type -3 342 276 1919 109 33 4 chr6 11079847 11080122 -178199432 + AluSq SINE Alu 1 283 -30 1338 122 0 0 chr6 11080122 11080310 -178199244 + AluSg/x SINE Alu 115 302 -8 1012 146 70 0 chr6 11080392 11080563 -178198991 - MER2 DNA MER2_type -159 186 4 260 286 214 18 chr6 11080779 11080891 -178198663 + MER5A DNA MER1_type 50 183 -6 922 26 78 0 chr6 11081722 11081837 -178197717 - L1PA7 LINE L1 -1 6153 6030 379 146 49 37 chr6 11082317 11082399 -178197155 - L1MA10 LINE L1 -4 6330 6248 899 170 0 0 chr6 11082924 11083059 -178196495 + FRAM SINE Alu 2 136 -40 222 250 0 0 chr6 11083852 11083900 -178195654 + T-rich Low_complexity Low_complexity 1 48 0 881 168 0 56 chr6 11084776 11084955 -178194599 - FRAM SINE Alu -5 171 3 2698 148 102 5 chr6 11086872 11087331 -178192223 - MER61D LTR ERV1 0 501 1 291 302 116 28 chr6 11087336 11087551 -178192003 + MIR SINE MIR 11 244 -18 2128 127 102 40 chr6 11087604 11088015 -178191539 + L1MA8 LINE L1 3063 3508 -2638 1562 212 0 7 chr6 11088015 11088307 -178191247 + AluJo SINE Alu 1 290 -22 2128 127 102 40 chr6 11088307 11088366 -178191188 + L1MA8 LINE L1 3508 3562 -2584 828 165 0 0 chr6 11088381 11088508 -178191046 - FLAM_C SINE Alu -16 127 1 3527 163 41 17 chr6 11088509 11088848 -178190706 + L1MA8 LINE L1 3552 3881 -2265 1868 162 14 3 chr6 11088848 11089145 -178190409 - AluJb SINE Alu -10 302 3 3527 163 41 17 chr6 11089145 11089469 -178190085 + L1MA8 LINE L1 3881 4231 -1915 626 177 0 139 chr6 11089469 11089627 -178189927 + Tigger1 DNA MER2_type 1 136 -2282 2244 114 10 0 chr6 11089652 11089960 -178189594 - AluSx SINE Alu -1 311 1 830 148 126 16 chr6 11089960 11090000 -178189554 + Tigger1 DNA MER2_type 2216 2250 -168 2222 112 3 3 chr6 11090000 11090305 -178189249 - AluSc SINE Alu -4 305 1 830 148 126 16 chr6 11090305 11090326 -178189228 + Tigger1 DNA MER2_type 2250 2267 -151 841 123 0 46 chr6 11090326 11090456 -178189098 - FLAM_C SINE Alu -9 124 1 830 148 126 16 chr6 11090456 11090576 -178188978 + Tigger1 DNA MER2_type 2267 2418 0 5372 155 41 55 chr6 11090576 11090910 -178188644 + L1MA8 LINE L1 4230 4567 -1724 2069 119 6 26 chr6 11090910 11091222 -178188332 - AluSx SINE Alu -6 306 1 5372 155 41 55 chr6 11091222 11091290 -178188264 + L1MA8 LINE L1 4567 4634 -1657 2077 130 0 7 chr6 11091290 11091590 -178187964 + AluSx SINE Alu 7 304 -8 5372 155 41 55 chr6 11091590 11092195 -178187359 + L1MA8 LINE L1 4634 5246 -1045 2740 176 45 50 chr6 11092195 11092810 -178186744 - LTR9 LTR ERV1 0 612 1 5372 155 41 55 chr6 11092810 11092905 -178186649 + L1MA8 LINE L1 5246 5341 -950 416 36 0 0 chr6 11092905 11092961 -178186593 - L1PB2 LINE L1 -2 6149 6094 216 0 0 0 chr6 11092961 11092985 -178186569 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2141 106 7 0 chr6 11092985 11093268 -178186286 - AluSx SINE Alu -27 285 1 5372 155 41 55 chr6 11093268 11094009 -178185545 + L1MA8 LINE L1 5339 6089 -202 2319 97 7 3 chr6 11094009 11094307 -178185247 + AluSq SINE Alu 1 299 -14 5372 155 41 55 chr6 11094307 11094349 -178185205 + L1MA8 LINE L1 6089 6130 -161 725 127 18 0 chr6 11094349 11094459 -178185095 + HY1 scRNA scRNA 1 112 0 5372 155 41 55 chr6 11094459 11094647 -178184907 + L1MA8 LINE L1 6130 6286 -5 648 169 159 36 chr6 11094675 11094782 -178184772 - Charlie5 DNA MER1_type -15 2570 2478 1446 162 64 72 chr6 11094782 11095159 -178184395 + MLT1A2 LTR MaLR 1 374 0 648 169 159 36 chr6 11095159 11095246 -178184308 - Charlie5 DNA MER1_type -107 2478 2352 332 125 54 0 chr6 11095349 11095405 -178184149 - L1MB4 LINE L1 -1 6179 6121 292 105 0 0 chr6 11095405 11095443 -178184111 - U2 snRNA snRNA -150 38 1 844 159 61 0 chr6 11095445 11095608 -178183946 - L1MB3 LINE L1 -51 6132 5960 510 183 82 0 chr6 11095608 11095718 -178183836 - MER33 DNA MER1_type -274 50 1 888 218 35 5 chr6 11096215 11096412 -178183142 - MLT1B LTR MaLR 0 390 188 622 234 39 0 chr6 11096464 11096592 -178182962 - AluJo SINE Alu -178 134 2 630 200 80 27 chr6 11096603 11096753 -178182801 - MLT1B LTR MaLR -216 158 1 227 290 0 0 chr6 11097183 11097252 -178182302 + L2 LINE L2 2436 2504 -810 954 155 106 48 chr6 11098564 11098771 -178180783 - MER20 DNA MER1_type 0 219 1 601 200 31 15 chr6 11098783 11098913 -178180641 - MER5A DNA MER1_type -5 184 53 961 276 130 30 chr6 11099039 11099477 -178180077 + MLT1L LTR MaLR 40 521 -94 622 227 67 0 chr6 11099609 11099759 -178179795 - MER3 DNA MER1_type 0 209 50 316 234 112 90 chr6 11099819 11100007 -178179547 - MER106A DNA MER1_type -44 192 1 3877 228 49 42 chr6 11100162 11101545 -178178009 + L1PA11 LINE L1 2 2756 -4828 * 17210 133 30 12 chr6 11101544 11103601 -178175953 + L1PA11 LINE L1 3849 5867 -1745 2318 103 3 3 chr6 11103601 11103903 -178175651 + AluSq SINE Alu 1 302 -11 17210 133 30 12 chr6 11103903 11104699 -178174855 + L1PA11 LINE L1 5867 6750 -862 189 0 0 0 chr6 11104699 11104720 -178174834 + (CA)n Simple_repeat Simple_repeat 2 22 0 17210 133 30 12 chr6 11104720 11105015 -178174539 + L1PA11 LINE L1 6750 7038 -574 1360 59 6 6 chr6 11105015 11105184 -178174370 + AluY SINE Alu 130 298 -13 3658 82 80 4 chr6 11105184 11105710 -178173844 + L1PA11 LINE L1 7031 7596 -16 393 311 68 34 chr6 11105711 11105884 -178173670 - L2 LINE L2 -620 2694 2505 3316 144 40 36 chr6 11105884 11106333 -178173221 - MER41B LTR ERV1 0 635 182 1906 143 7 13 chr6 11106333 11106633 -178172921 - AluSx SINE Alu -14 298 1 3316 144 40 36 chr6 11106633 11106816 -178172738 - MER41B LTR ERV1 -453 182 1 393 311 68 34 chr6 11106816 11106935 -178172619 - L2 LINE L2 -809 2505 2392 1653 163 15 7 chr6 11107458 11107728 -178171826 - AluSx SINE Alu -10 302 31 8647 159 44 30 chr6 11107733 11109402 -178170152 - pTR5 LTR ERV1 -2 2436 744 372 160 43 0 chr6 11109425 11109519 -178170035 + CT-rich Low_complexity Low_complexity 1 98 0 2010 113 17 3 chr6 11109524 11109817 -178169737 - AluY SINE Alu -14 297 1 252 236 144 69 chr6 11109922 11110096 -178169458 + MLT1H LTR MaLR 114 300 -249 2314 162 86 54 chr6 11110154 11110275 -178169279 + MER34C LTR ERV1 31 147 -438 2461 75 0 0 chr6 11110275 11110570 -178168984 - AluSg SINE Alu -15 295 1 2314 162 86 54 chr6 11110570 11110986 -178168568 + MER34C LTR ERV1 147 585 0 752 161 121 7 chr6 11111051 11111200 -178168354 + HsTC2 DNA Tc2 228 393 -1505 535 234 54 0 chr6 11111353 11111464 -178168090 - MER58A DNA MER1_type 0 117 1 2174 98 4 0 chr6 11111483 11111801 -178167753 - AluSc SINE Alu 0 322 4 233 264 109 39 chr6 11112232 11112475 -178167079 + MER5C DNA MER1_type 7 323 -1 2239 125 0 0 chr6 11112514 11112810 -178166744 - AluSx SINE Alu -16 296 1 337 281 52 22 chr6 11113497 11113632 -178165922 + MIR3 SINE MIR 11 149 -59 635 178 123 6 chr6 11114333 11114496 -178165058 - MER5A DNA MER1_type -5 184 3 773 169 0 0 chr6 11114548 11114666 -178164888 + AluJo/FLAM SINE Alu 1 118 -184 917 125 31 0 chr6 11114667 11114819 -178164735 - AluSg/x SINE Alu 0 308 153 1573 114 9 5 chr6 11115056 11115276 -178164278 + AluSp SINE Alu 74 294 -19 1165 210 39 0 chr6 11115392 11115621 -178163933 - MER8 DNA MER2_type -1 238 1 4037 178 63 43 chr6 11116841 11116994 -178162560 + L1MB8 LINE L1 4643 4792 -1386 1439 68 111 10 chr6 11116994 11117201 -178162353 - MER30 DNA MER1_type 0 230 3 4037 178 63 43 chr6 11117201 11117566 -178161988 + L1MB8 LINE L1 4792 5148 -1030 2218 114 0 7 chr6 11117566 11117863 -178161691 + AluSx SINE Alu 3 297 -15 2275 118 0 3 chr6 11117866 11118172 -178161382 + AluSx SINE Alu 1 305 -7 4037 178 63 43 chr6 11118172 11118784 -178160770 + L1MB8 LINE L1 5149 5808 -370 2580 47 3 0 chr6 11118784 11119080 -178160474 + AluY SINE Alu 1 297 -14 4037 178 63 43 chr6 11119080 11119407 -178160147 + L1MB8 LINE L1 5808 6127 -51 2273 102 3 3 chr6 11119479 11119783 -178159771 - AluSq SINE Alu -9 304 1 472 255 151 0 chr6 11120517 11120623 -178158931 + MER96 DNA MER1_type? 54 175 0 2149 102 6 49 chr6 11120676 11121001 -178158553 + AluSx SINE Alu 1 311 -1 1283 165 39 103 chr6 11121085 11121395 -178158159 + MLT1D LTR MaLR 148 428 -77 2150 107 0 14 chr6 11121395 11121686 -178157868 + AluSx SINE Alu 1 287 -25 1283 165 39 103 chr6 11121686 11121760 -178157794 + MLT1D LTR MaLR 428 505 0 690 183 0 32 chr6 11122303 11122429 -178157125 - FLAM_A SINE Alu -15 127 6 354 314 98 17 chr6 11122473 11122709 -178156845 + L1MDa LINE L1 1665 1919 -4621 24 0 0 0 chr6 11122781 11122805 -178156749 + AT_rich Low_complexity Low_complexity 1 24 0 277 247 97 32 chr6 11123017 11123171 -178156383 - L1M4 LINE L1 -1956 4190 4027 2197 78 0 81 chr6 11123173 11123494 -178156060 + AluY SINE Alu 1 295 -16 334 319 42 11 chr6 11124155 11124346 -178155208 + L1M4 LINE L1 4900 5096 -1050 1863 145 0 11 chr6 11124411 11124687 -178154867 + AluJo SINE Alu 1 273 -39 391 208 17 8 chr6 11124710 11124830 -178154724 + GA-rich Low_complexity Low_complexity 2 122 0 260 347 65 39 chr6 11124830 11125213 -178154341 - L2 LINE L2 -444 2870 2478 356 364 17 0 chr6 11125223 11125399 -178154155 - L2 LINE L2 -958 2356 2178 564 199 33 17 chr6 11125409 11125543 -178154011 + MER58 DNA MER1_type 12 156 -94 283 335 71 50 chr6 11125543 11125907 -178153647 - L2 LINE L2 -1973 1341 970 432 270 14 20 chr6 11126174 11126322 -178153232 + MIR SINE MIR 113 259 -3 1386 142 44 0 chr6 11126340 11126565 -178152989 - MER46A DNA MER2_type 0 236 2 803 207 0 18 chr6 11126593 11126762 -178152792 - AluSg/x SINE Alu -13 299 134 31 26 0 0 chr6 11127004 11127042 -178152512 + AT_rich Low_complexity Low_complexity 1 38 0 1119 184 19 10 chr6 11127622 11127828 -178151726 + AluJo SINE Alu 1 208 -104 2460 261 44 75 chr6 11127839 11127869 -178151685 + ERVL LTR ERVL 3766 3795 -1969 2155 139 0 0 chr6 11127869 11128179 -178151375 + AluSx SINE Alu 1 310 -2 2460 261 44 75 chr6 11128179 11128864 -178150690 + ERVL LTR ERVL 3795 4446 -1318 2289 101 0 16 chr6 11128864 11129170 -178150384 - AluSx SINE Alu -11 301 1 2460 261 44 75 chr6 11129170 11129415 -178150139 + ERVL LTR ERVL 4446 4697 -1067 356 228 63 0 chr6 11129418 11129497 -178150057 - ERVL LTR ERVL -1912 3852 3769 1975 264 61 22 chr6 11129528 11130167 -178149387 + ERVL LTR ERVL 4719 5382 -382 347 200 156 0 chr6 11130514 11130604 -178148950 + LTR41 LTR ERVL 1 104 -669 2302 80 3 7 chr6 11130689 11130976 -178148578 + AluSx SINE Alu 1 286 -26 244 310 57 64 chr6 11131006 11131324 -178148230 + L1 LINE L1 2503 2822 -3324 378 0 0 0 chr6 11131324 11131366 -178148188 + (CA)n Simple_repeat Simple_repeat 2 43 0 244 310 57 64 chr6 11131366 11131419 -178148135 + L1 LINE L1 2822 2874 -3272 2203 121 3 10 chr6 11131419 11131733 -178147821 + AluSx SINE Alu 1 312 0 244 310 57 64 chr6 11131733 11132328 -178147226 + L1 LINE L1 2874 3463 -2683 310 242 65 61 chr6 11132519 11132616 -178146938 + L1 LINE L1 4185 4280 -1866 2303 101 10 0 chr6 11132616 11132914 -178146640 + AluSx SINE Alu 4 304 -8 310 242 65 61 chr6 11132914 11133047 -178146507 + L1 LINE L1 4280 4416 -1730 361 246 143 6 chr6 11133060 11133235 -178146319 - L1MC5 LINE L1 -33 7928 7730 1750 163 48 0 chr6 11133419 11133708 -178145846 + AluSx SINE Alu 1 303 -9 319 210 210 24 chr6 11133760 11133927 -178145627 + HAL1 LINE L1 1984 2181 -326 422 280 41 46 chr6 11134005 11134223 -178145331 + HAL1 LINE L1 2291 2507 0 2011 134 3 7 chr6 11134229 11134528 -178145026 + AluSx SINE Alu 14 311 -1 222 268 14 28 chr6 11136064 11136135 -178143419 + L2 LINE L2 3203 3272 0 2279 82 3 3 chr6 11136347 11136641 -178142913 - AluSg SINE Alu -16 294 1 1841 93 0 0 chr6 11136751 11136976 -178142578 + AluSq SINE Alu 1 225 -88 198 0 0 0 chr6 11137585 11137607 -178141947 + (A)n Simple_repeat Simple_repeat 1 22 0 1586 144 60 28 chr6 11137918 11138202 -178141352 + AluJo SINE Alu 18 310 -2 25 0 0 0 chr6 11138242 11138267 -178141287 + AT_rich Low_complexity Low_complexity 1 25 0 958 149 60 40 chr6 11138367 11138420 -178141134 - MER3 DNA MER1_type -4 205 155 2177 102 34 14 chr6 11138420 11138715 -178140839 + AluSx SINE Alu 1 301 -11 958 149 60 40 chr6 11138715 11138862 -178140692 - MER3 DNA MER1_type -54 155 1 1935 172 3 0 chr6 11138896 11139199 -178140355 + AluJb SINE Alu 1 304 -8 21 36 0 0 chr6 11139317 11139345 -178140209 + AT_rich Low_complexity Low_complexity 1 28 0 2119 123 0 3 chr6 11140210 11140502 -178139052 - AluSx SINE Alu -21 291 1 831 162 71 0 chr6 11140509 11140663 -178138891 - MLT1A2 LTR MaLR -208 166 2 417 248 29 15 chr6 11141208 11141345 -178138209 + MIR SINE MIR 104 242 -20 180 111 0 0 chr6 11141615 11141642 -178137912 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1851 106 41 123 chr6 11143164 11143531 -178136023 + MER44D DNA MER2_type 1 607 -2 245 269 86 21 chr6 11143614 11143707 -178135847 + L2 LINE L2 2259 2357 -957 2152 114 32 66 chr6 11144655 11145032 -178134522 + THE1B LTR MaLR 1 364 0 232 321 12 12 chr6 11145446 11145530 -178134024 - L2 LINE L2 -55 3258 3175 2390 84 7 3 chr6 11145651 11145948 -178133606 + AluSq SINE Alu 1 298 -15 2349 100 0 10 chr6 11146188 11146498 -178133056 + AluSc SINE Alu 1 307 -2 2318 105 77 6 chr6 11146622 11146985 -178132569 + MLT1B LTR MaLR 1 389 -1 1051 188 22 0 chr6 11147348 11147529 -178132025 + AluJb SINE Alu 114 298 -14 1393 130 19 5 chr6 11148217 11148433 -178131121 - MER20 DNA MER1_type 0 219 1 1663 161 94 11 chr6 11148561 11148847 -178130707 + AluJb SINE Alu 2 311 -1 1866 206 67 28 chr6 11149096 11149558 -178129996 + MLT1D LTR MaLR 26 505 0 1732 171 0 14 chr6 11149587 11149873 -178129681 + AluJo SINE Alu 1 282 -30 845 196 24 6 chr6 11149889 11150057 -178129497 + FRAM SINE Alu 1 165 -11 22 0 0 0 chr6 11150148 11150170 -178129384 + AT_rich Low_complexity Low_complexity 1 22 0 295 191 0 16 chr6 11151123 11151186 -178128368 + MER5A DNA MER1_type 14 75 -114 2372 109 0 0 chr6 11151186 11151497 -178128057 + AluSx SINE Alu 1 311 -1 330 183 28 28 chr6 11151507 11151559 -178127995 + AluJb SINE Alu 1 52 -250 848 70 26 0 chr6 11151559 11151673 -178127881 + MER41A LTR ERV1 1 117 -437 7426 106 150 88 chr6 11151676 11153256 -178126298 + pTR5 LTR ERV1 761 2438 0 2900 91 72 2 chr6 11153260 11153676 -178125878 + MER41A LTR ERV1 109 553 -1 1347 207 4 0 chr6 11153676 11153918 -178125636 + AluJb SINE Alu 50 292 -20 2102 129 10 7 chr6 11154587 11154896 -178124658 - AluSx SINE Alu -2 310 1 308 267 17 75 chr6 11155304 11155424 -178124130 + MIR3 SINE MIR 11 123 -85 749 224 70 8 chr6 11155452 11155693 -178123861 + MER112 DNA MER1_type 1 256 0 276 285 51 29 chr6 11156211 11156348 -178123206 + L1ME LINE L1 5485 5624 -497 352 273 168 6 chr6 11156471 11156632 -178122922 + MIR SINE MIR 64 250 -12 1177 183 9 5 chr6 11156717 11156930 -178122624 - MER20 DNA MER1_type -5 214 1 2317 110 0 0 chr6 11156954 11157262 -178122292 + AluSx SINE Alu 1 308 -4 2595 65 0 0 chr6 11157612 11157918 -178121636 + AluSc SINE Alu 1 306 -3 810 124 22 58 chr6 11158001 11158138 -178121416 - FLAM_C SINE Alu -1 132 1 193 353 72 18 chr6 11159110 11159277 -178120277 + L2 LINE L2 2563 2738 -576 2184 159 12 58 chr6 11159684 11160099 -178119455 + MSTD LTR MaLR 1 396 0 265 358 112 0 chr6 11160116 11160250 -178119304 + Charlie8 DNA MER1_type 9 157 -2260 665 251 29 78 chr6 11160471 11160554 -178119000 + L1ME3A LINE L1 5359 5445 -676 573 246 0 8 chr6 11160554 11160684 -178118870 - FLAM_A SINE Alu 0 133 5 665 251 29 78 chr6 11160684 11160864 -178118690 + L1ME3A LINE L1 5445 5605 -516 2517 69 3 3 chr6 11160864 11161167 -178118387 + AluSp SINE Alu 2 304 -9 665 251 29 78 chr6 11161167 11161224 -178118330 + L1ME3A LINE L1 5605 5663 -458 533 302 45 11 chr6 11161289 11161468 -178118086 + MIR SINE MIR 50 234 -28 302 271 49 49 chr6 11161537 11161672 -178117882 + L1ME3A LINE L1 5740 5877 -244 2319 126 41 60 chr6 11161672 11162047 -178117507 + MSTA LTR MaLR 1 368 -60 1959 95 0 4 chr6 11162047 11162300 -178117254 + AluSx SINE Alu 55 306 -6 2319 126 41 60 chr6 11162300 11162360 -178117194 + MSTA LTR MaLR 368 428 0 302 271 49 49 chr6 11162360 11162427 -178117127 + L1ME3A LINE L1 5876 5942 -179 520 263 114 63 chr6 11162760 11162927 -178116627 + MLT1H LTR MaLR 15 172 -377 2284 96 0 0 chr6 11162927 11163208 -178116346 - AluSx SINE Alu -31 281 1 520 263 114 63 chr6 11163208 11163356 -178116198 + MLT1H LTR MaLR 172 346 -203 441 231 32 102 chr6 11163584 11163731 -178115823 + MER5B DNA MER1_type 1 134 -44 1957 146 23 3 chr6 11163731 11164032 -178115522 + AluJb SINE Alu 1 307 -5 441 231 32 102 chr6 11164032 11164070 -178115484 + MER5B DNA MER1_type 134 173 -5 1294 164 5 18 chr6 11164075 11164294 -178115260 - AluJo SINE Alu -12 300 85 1932 158 13 7 chr6 11164352 11164662 -178114892 - AluJb SINE Alu 0 312 1 2231 83 0 52 chr6 11165044 11165327 -178114227 + AluSc SINE Alu 1 266 -43 359 56 19 0 chr6 11165327 11165381 -178114173 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 2231 83 0 52 chr6 11165381 11165423 -178114131 + AluSc SINE Alu 266 309 0 2191 119 3 0 chr6 11165427 11165722 -178113832 + AluSx SINE Alu 2 297 -15 370 230 36 50 chr6 11165722 11165861 -178113693 + MER74B LTR ERVL 420 556 -66 408 268 127 33 chr6 11166870 11167083 -178112471 + L1ME3A LINE L1 5933 6165 -5 2434 84 3 3 chr6 11167271 11167581 -178111973 - AluY SINE Alu -1 310 1 1731 140 0 79 chr6 11168149 11168487 -178111067 + AluJb SINE Alu 1 312 0 648 253 69 16 chr6 11168590 11168835 -178110719 + L1ME1 LINE L1 5892 6149 -17 662 278 57 5 chr6 11170262 11170474 -178109080 - MIR SINE MIR -9 253 31 270 284 59 10 chr6 11170934 11171036 -178108518 - MIR SINE MIR -76 186 80 539 223 0 16 chr6 11171126 11171247 -178108307 - MIR3 SINE MIR -37 171 53 937 120 0 0 chr6 11171479 11171612 -178107942 + FLAM_C SINE Alu 1 133 0 1960 153 7 3 chr6 11171786 11172087 -178107467 + AluSx SINE Alu 1 302 -10 262 283 38 38 chr6 11172157 11172263 -178107291 - MIR SINE MIR -137 125 20 2256 100 3 0 chr6 11172708 11172999 -178106555 - AluSg SINE Alu -18 292 1 284 227 11 34 chr6 11173326 11173414 -178106140 + L1MC5 LINE L1 7830 7915 -46 2435 71 10 7 chr6 11173666 11173974 -178105580 + AluY SINE Alu 1 309 -2 1328 154 5 5 chr6 11174180 11174388 -178105166 + AluJb SINE Alu 85 292 -20 202 308 158 34 chr6 11174650 11174796 -178104758 - MIR SINE MIR -73 189 26 285 167 0 0 chr6 11174819 11174867 -178104687 + MER113 DNA MER1_type? 8 55 -466 867 219 11 0 chr6 11174996 11175183 -178104371 + MER5A DNA MER1_type 1 189 0 478 237 71 30 chr6 11175186 11175355 -178104199 - MIR SINE MIR -58 204 29 1757 179 7 3 chr6 11175609 11175906 -178103648 + AluJo SINE Alu 6 303 -9 2118 112 3 7 chr6 11176200 11176479 -178103075 + AluSc SINE Alu 1 280 -29 262 83 0 0 chr6 11176479 11176515 -178103039 + (CAAA)n Simple_repeat Simple_repeat 1 96 0 208 272 35 155 chr6 11178047 11178337 -178101217 - L2 LINE L2 -72 3200 2946 2455 72 0 0 chr6 11178389 11178681 -178100873 + AluSc SINE Alu 1 292 -17 2009 151 3 3 chr6 11178827 11179125 -178100429 - AluJo SINE Alu -14 298 1 220 125 25 0 chr6 11179799 11179839 -178099715 + (CA)n Simple_repeat Simple_repeat 2 42 0 749 62 44 31 chr6 11179992 11180219 -178099335 + (CA)n Simple_repeat Simple_repeat 1 230 0 194 266 0 75 chr6 11180459 11180553 -178099001 + MIR SINE MIR 51 137 -125 205 119 24 24 chr6 11181024 11181066 -178098488 + (TG)n Simple_repeat Simple_repeat 2 43 0 1012 118 14 0 chr6 11183621 11183765 -178095789 + FRAM SINE Alu 1 146 -30 423 0 0 0 chr6 11183885 11183932 -178095622 + (CA)n Simple_repeat Simple_repeat 1 47 0 3708 185 50 55 chr6 11184058 11185031 -178094523 + LTR5 LTR ERVK 1 969 0 324 288 42 17 chr6 11185783 11185901 -178093653 - MIR3 SINE MIR -23 185 65 368 330 84 14 chr6 11185930 11186145 -178093409 + MIR SINE MIR 33 262 0 456 63 63 40 chr6 11186341 11186515 -178093039 + (TA)n Simple_repeat Simple_repeat 2 179 0 475 149 50 37 chr6 11186515 11186676 -178092878 + (TTATA)n Simple_repeat Simple_repeat 2 164 0 373 133 55 12 chr6 11186676 11186841 -178092713 + (TA)n Simple_repeat Simple_repeat 1 172 0 399 171 18 9 chr6 11186892 11187003 -178092551 + (TA)n Simple_repeat Simple_repeat 2 113 0 2285 110 3 0 chr6 11187395 11187705 -178091849 + AluSp SINE Alu 1 311 -2 270 325 0 0 chr6 11188703 11188783 -178090771 - Charlie8 DNA MER1_type -2221 196 117 2362 109 0 0 chr6 11189119 11189431 -178090123 - AluSx SINE Alu 0 312 1 243 297 47 7 chr6 11189776 11189924 -178089630 + L1ME LINE L1 5279 5432 -730 1183 104 0 29 chr6 11189936 11190109 -178089445 - MER54A LTR ERVL 0 901 734 264 200 64 129 chr6 11190188 11190219 -178089335 + L2 LINE L2 3177 3208 -105 2465 69 7 0 chr6 11190219 11190522 -178089032 + AluY SINE Alu 1 305 -6 264 200 64 129 chr6 11190522 11190557 -178088997 + L2 LINE L2 3208 3244 -69 2050 110 33 20 chr6 11190557 11190856 -178088698 - AluSx SINE Alu -9 303 1 264 200 64 129 chr6 11190856 11190928 -178088626 + L2 LINE L2 3244 3307 -6 791 106 24 8 chr6 11190969 11191092 -178088462 - MER6 DNA MER2_type -258 607 483 2298 119 0 0 chr6 11191124 11191435 -178088119 + AluSq SINE Alu 1 311 -2 1485 175 98 7 chr6 11191855 11192024 -178087530 - AluJo SINE Alu 0 312 160 243 61 0 0 chr6 11192024 11192057 -178087497 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1485 175 98 7 chr6 11192057 11192173 -178087381 - AluJo SINE Alu -152 160 1 975 183 103 18 chr6 11192571 11192795 -178086759 - MER58B DNA MER1_type -15 326 84 968 70 0 0 chr6 11192795 11192910 -178086644 + AluSq SINE Alu 1 115 -198 2736 58 7 21 chr6 11192910 11193409 -178086145 - LTR7 LTR ERV1 -2 448 1 1418 107 0 10 chr6 11193409 11193606 -178085948 + AluSq SINE Alu 109 303 -10 353 227 107 0 chr6 11194272 11194347 -178085207 - MER58B DNA MER1_type -258 83 1 308 268 71 9 chr6 11194545 11194657 -178084897 + MIR SINE MIR 92 210 -52 442 307 0 43 chr6 11194784 11194947 -178084607 + MIR SINE MIR 94 249 -13 232 323 81 16 chr6 11195258 11195382 -178084172 + MIR SINE MIR 9 140 -122 2437 72 0 34 chr6 11196203 11196523 -178083031 - AluY SINE Alu -2 309 1 575 216 18 0 chr6 11196825 11196936 -178082618 + MER81 DNA DNA 2 114 0 2184 105 0 17 chr6 11197312 11197606 -178081948 + AluSq SINE Alu 1 289 -24 246 282 45 18 chr6 11197837 11197947 -178081607 + MIR3 SINE MIR 96 208 0 1403 175 130 0 chr6 11198731 11199000 -178080554 + AluJb SINE Alu 2 305 -7 645 126 42 7 chr6 11199000 11199143 -178080411 + GA-rich Low_complexity Low_complexity 1 148 0 886 185 7 0 chr6 11199479 11199630 -178079924 + FRAM SINE Alu 1 152 -14 351 0 0 0 chr6 11199690 11199729 -178079825 + (TG)n Simple_repeat Simple_repeat 1 39 0 1614 203 10 0 chr6 11201492 11201787 -178077767 - AluJo SINE Alu -14 298 1 810 134 0 0 chr6 11201803 11201915 -178077639 - FLAM_C SINE Alu -18 125 14 1751 183 14 0 chr6 11202371 11202656 -178076898 + AluJb SINE Alu 1 289 -23 2368 138 82 30 chr6 11203199 11203625 -178075929 - MER83 LTR ERV1 0 448 1 672 297 127 13 chr6 11203725 11204181 -178075373 + L2 LINE L2 2794 3309 -4 730 228 60 5 chr6 11204212 11204396 -178075158 - MIR SINE MIR -67 195 2 185 337 12 12 chr6 11204428 11204511 -178075043 - MIR SINE MIR -172 90 8 270 263 50 10 chr6 11204703 11204802 -178074752 + MIR SINE MIR 93 195 -67 288 0 0 0 chr6 11205155 11205187 -178074367 + (TA)n Simple_repeat Simple_repeat 2 33 0 2351 109 0 0 chr6 11205193 11205505 -178074049 - AluSx SINE Alu 0 312 1 266 228 114 0 chr6 11205522 11205601 -178073953 + MIR SINE MIR 118 205 -57 1814 133 15 0 chr6 11205794 11206057 -178073497 - AluSx SINE Alu -14 298 32 246 32 0 0 chr6 11206277 11206308 -178073246 + (T)n Simple_repeat Simple_repeat 1 31 0 1295 158 5 0 chr6 11206327 11206529 -178073025 - AluJo SINE Alu -109 203 1 372 297 113 15 chr6 11206529 11206724 -178072830 + MLT1K LTR MaLR 211 424 -164 289 260 0 0 chr6 11206733 11206810 -178072744 - MER81 DNA DNA -37 77 1 504 259 36 18 chr6 11206814 11206980 -178072574 + MLT1K LTR MaLR 413 581 -7 2351 95 13 0 chr6 11207503 11207807 -178071747 + AluSp SINE Alu 1 308 -5 2150 103 0 7 chr6 11208574 11208866 -178070688 + AluSx SINE Alu 1 290 -22 22 56 0 0 chr6 11210515 11210551 -178069003 + AT_rich Low_complexity Low_complexity 1 36 0 525 276 226 22 chr6 11210674 11211036 -178068518 - L2 LINE L2 0 3313 2878 1739 169 0 13 chr6 11211173 11211474 -178068080 + AluJo SINE Alu 1 297 -15 2079 133 0 0 chr6 11215059 11215353 -178064201 - AluJb SINE Alu -18 294 1 1628 162 75 12 chr6 11216243 11216564 -178062990 + MER2 DNA MER2_type 1 341 -3 242 220 0 0 chr6 11216564 11216614 -178062940 + MER2 DNA MER2_type 296 345 0 22 0 0 0 chr6 11216644 11216666 -178062888 + AT_rich Low_complexity Low_complexity 1 22 0 2411 99 0 3 chr6 11216906 11217220 -178062334 + AluSq SINE Alu 1 313 0 2197 115 0 0 chr6 11217222 11217517 -178062037 + AluSg1 SINE Alu 1 295 -14 49 0 0 0 chr6 11217517 11217566 -178061988 + AT_rich Low_complexity Low_complexity 1 49 0 379 270 71 16 chr6 11218062 11218188 -178061366 - MER5A DNA MER1_type -1 188 56 1504 181 41 11 chr6 11218188 11218458 -178061096 + AluJb SINE Alu 7 284 -28 197 297 94 0 chr6 11218471 11218535 -178061019 - MER5A DNA MER1_type -116 73 4 1996 114 64 0 chr6 11218629 11218910 -178060644 + AluSq SINE Alu 1 299 -14 1028 113 0 0 chr6 11219260 11219401 -178060153 + AluSg/x SINE Alu 168 308 -4 1016 244 29 21 chr6 11219429 11219708 -178059846 + L1ME3A LINE L1 5479 5759 -411 811 132 5 137 chr6 11219718 11219908 -178059646 - MER20 DNA MER1_type 0 219 55 2174 100 10 3 chr6 11219909 11220199 -178059355 + AluSg SINE Alu 2 293 -17 679 223 39 18 chr6 11220224 11220452 -178059102 + L1ME3A LINE L1 5802 5942 -228 738 132 0 83 chr6 11220703 11220847 -178058707 - FRAM SINE Alu -5 171 40 3180 219 191 18 chr6 11220847 11221927 -178057627 + L1MC4 LINE L1 6775 8041 -1 268 250 20 30 chr6 11221909 11222009 -178057545 + L1MB7 LINE L1 5033 5131 -1015 * 26 0 0 0 chr6 11222208 11222234 -178057320 + AT_rich Low_complexity Low_complexity 1 26 0 2228 111 0 7 chr6 11222288 11222586 -178056968 - AluSg SINE Alu -12 298 3 617 193 0 18 chr6 11222587 11222701 -178056853 + Tigger2 DNA MER2_type 2597 2708 -10 2032 113 3 7 chr6 11223983 11224303 -178055251 - AluSq SINE Alu 0 319 1 256 74 0 37 chr6 11224305 11224359 -178055195 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2150 87 4 7 chr6 11224359 11224635 -178054919 - AluSg SINE Alu -28 282 8 2331 86 7 0 chr6 11224642 11224933 -178054621 - AluSx SINE Alu -19 293 1 264 208 56 28 chr6 11225091 11225163 -178054391 + MIR SINE MIR 58 131 -131 3328 181 79 28 chr6 11225216 11225474 -178054080 + L1MB7 LINE L1 5348 5591 -593 1834 128 53 18 chr6 11225474 11225756 -178053798 + AluSx SINE Alu 1 292 -20 2584 73 0 6 chr6 11225757 11226071 -178053483 + AluSq SINE Alu 1 312 -1 3328 181 79 28 chr6 11226071 11226591 -178052963 + L1MB7 LINE L1 5590 6168 -16 3682 86 48 11 chr6 11227422 11227959 -178051595 + L1PA11 LINE L1 5616 6172 -2 334 127 28 14 chr6 11228798 11228869 -178050685 + CT-rich Low_complexity Low_complexity 1 72 0 1716 144 34 7 chr6 11228869 11229161 -178050393 - AluJb SINE Alu -12 300 1 417 278 127 58 chr6 11229325 11229476 -178050078 - MIR SINE MIR -12 250 80 2303 91 3 0 chr6 11229476 11229784 -178049770 + AluSp SINE Alu 1 309 -4 417 278 127 58 chr6 11229784 11229837 -178049717 - MIR SINE MIR -182 80 32 1824 136 4 191 chr6 11230477 11230507 -178049047 + MER47B DNA MER2_type 1 35 -2288 180 0 0 0 chr6 11230507 11230527 -178049027 + (TA)n Simple_repeat Simple_repeat 2 21 0 2350 87 0 3 chr6 11230527 11230839 -178048715 - AluSx SINE Alu -1 311 1 1824 136 4 191 chr6 11230839 11231235 -178048319 + MER47B DNA MER2_type 34 319 -2004 2255 93 10 0 chr6 11231235 11231545 -178048009 - AluSq SINE Alu 0 313 1 1824 136 4 191 chr6 11231545 11231630 -178047924 + MER47B DNA MER2_type 319 418 0 1626 98 9 0 chr6 11231900 11232124 -178047430 + AluSq SINE Alu 1 226 -87 1035 83 0 0 chr6 11232124 11232257 -178047297 + AluSg/x SINE Alu 165 297 -15 2180 91 10 0 chr6 11232310 11232606 -178046948 + AluY SINE Alu 1 299 -12 2283 96 0 0 chr6 11233759 11234060 -178045494 - AluSx SINE Alu -9 303 3 992 180 20 10 chr6 11234097 11234297 -178045257 - AluJo SINE Alu -24 288 87 2056 112 20 0 chr6 11234528 11234822 -178044732 + AluSx SINE Alu 1 300 -12 2120 108 0 40 chr6 11235134 11235457 -178044097 - AluSx SINE Alu -1 311 2 546 150 0 79 chr6 11235457 11235584 -178043970 + Charlie5 DNA MER1_type 2508 2624 0 2167 99 3 10 chr6 11235635 11235939 -178043615 - AluSx SINE Alu -10 302 1 189 74 0 0 chr6 11236029 11236056 -178043498 + (A)n Simple_repeat Simple_repeat 1 27 0 903 156 31 145 chr6 11236237 11236526 -178043028 + AluJo SINE Alu 43 298 -14 274 185 19 0 chr6 11236761 11236815 -178042739 - L3 LINE CR1 -2 1575 1521 490 310 81 66 chr6 11236916 11237264 -178042290 - L3 LINE CR1 -237 1340 988 442 265 166 7 chr6 11237408 11237559 -178041995 - MER5B DNA MER1_type 0 178 4 298 266 73 62 chr6 11237777 11237906 -178041648 + MIR3 SINE MIR 20 158 -50 2107 81 46 3 chr6 11237906 11238191 -178041363 - AluSg SINE Alu -13 297 1 298 266 73 62 chr6 11238191 11238207 -178041347 + MIR3 SINE MIR 158 172 -36 183 42 0 0 chr6 11238215 11238239 -178041315 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 864 119 0 0 chr6 11238257 11238375 -178041179 - FLAM_C SINE Alu -15 118 1 1957 116 0 11 chr6 11238579 11238884 -178040670 - AluSx SINE Alu 0 302 1 197 275 50 0 chr6 11241082 11241162 -178038392 + MIR SINE MIR 124 207 -55 2225 95 0 3 chr6 11241512 11241816 -178037738 - AluSq SINE Alu -4 309 7 24 32 0 0 chr6 11241977 11242008 -178037546 + AT_rich Low_complexity Low_complexity 1 31 0 644 182 41 8 chr6 11242009 11242130 -178037424 - FLAM_C SINE Alu -18 125 1 853 121 15 8 chr6 11242261 11242393 -178037161 + FLAM_C SINE Alu 1 133 0 1103 152 0 45 chr6 11244095 11244293 -178035261 - AluSp SINE Alu 0 313 125 1717 58 4 9 chr6 11244486 11244712 -178034842 + AluSp SINE Alu 75 299 -14 2556 33 0 3 chr6 11244970 11245273 -178034281 - AluY SINE Alu -9 302 1 2073 97 3 22 chr6 11245515 11245826 -178033728 - AluSq SINE Alu -8 305 1 1845 126 43 0 chr6 11246785 11247062 -178032492 + AluSx SINE Alu 10 298 -14 276 231 62 15 chr6 11247340 11247405 -178032149 - L2 LINE L2 -4 3309 3242 264 240 132 66 chr6 11248188 11248309 -178031245 + MIR3 SINE MIR 2 130 -78 816 150 8 8 chr6 11248464 11248597 -178030957 + FLAM_A SINE Alu 1 133 0 1958 131 24 0 chr6 11248676 11248974 -178030580 - AluSx SINE Alu -7 305 1 2218 90 3 10 chr6 11248988 11249300 -178030254 - AluSp SINE Alu 0 313 4 2102 108 13 3 chr6 11249307 11249612 -178029942 - AluSx SINE Alu -4 308 1 315 228 67 40 chr6 11249643 11249792 -178029762 + L1ME4a LINE L1 5968 6120 -1 1991 102 14 10 chr6 11250515 11250810 -178028744 + AluSx SINE Alu 1 296 -16 312 226 157 57 chr6 11250843 11251002 -178028552 + L1ME4a LINE L1 5525 5699 -422 2256 65 3 3 chr6 11251101 11251394 -178028160 + AluY SINE Alu 1 293 -18 1555 162 0 4 chr6 11251394 11251666 -178027888 + AluJb SINE Alu 42 312 0 239 139 0 0 chr6 11251681 11251717 -178027837 + L1ME4a LINE L1 5761 5796 -446 239 272 109 7 chr6 11251835 11251982 -178027572 + L1ME4a LINE L1 5959 6120 -1 2318 67 0 7 chr6 11252181 11252481 -178027073 - AluY SINE Alu -13 298 1 2357 76 3 0 chr6 11252710 11253013 -178026541 + AluSp SINE Alu 1 304 -9 2200 114 58 15 chr6 11253046 11253442 -178026112 + L1MA3 LINE L1 5893 6305 0 23 0 0 0 chr6 11253520 11253543 -178026011 + AT_rich Low_complexity Low_complexity 1 23 0 2006 123 0 0 chr6 11253553 11253837 -178025717 - AluSx SINE Alu -28 284 1 21 0 0 0 chr6 11253842 11253863 -178025691 + AT_rich Low_complexity Low_complexity 1 21 0 289 299 92 38 chr6 11255560 11255744 -178023810 - MIR SINE MIR -20 242 49 641 214 104 0 chr6 11255746 11255900 -178023654 - AluJ SINE Alu -11 301 132 2279 93 0 0 chr6 11255910 11256211 -178023343 - AluSq SINE Alu -12 301 1 2106 89 7 0 chr6 11256349 11256661 -178022893 + AluSp SINE Alu 1 314 0 780 143 42 0 chr6 11256666 11256785 -178022769 - AluJ SINE Alu -187 125 2 288 333 116 21 chr6 11256817 11257006 -178022548 + L2 LINE L2 2953 3159 -113 2301 152 47 19 chr6 11257040 11257467 -178022087 - L1MA6 LINE L1 0 6300 5862 1576 209 30 6 chr6 11257568 11257898 -178021656 + MER58B DNA MER1_type 1 338 -3 692 308 71 5 chr6 11258046 11258270 -178021284 + MIR SINE MIR 21 259 -3 2078 127 0 0 chr6 11258967 11259266 -178020288 - AluSx SINE Alu -13 299 1 2366 137 6 3 chr6 11259349 11259708 -178019846 + MER46B DNA MER2_type 2 236 0 27 0 0 0 chr6 11259750 11259777 -178019777 + AT_rich Low_complexity Low_complexity 1 27 0 269 285 122 16 chr6 11259810 11259933 -178019621 - MIR3 SINE MIR -17 191 56 307 53 0 0 chr6 11260449 11260487 -178019067 - tRNA-Gln-CAG tRNA tRNA -37 38 1 2138 108 0 7 chr6 11260720 11261027 -178018527 - AluSx SINE Alu -3 309 5 1567 168 20 7 chr6 11261042 11261339 -178018215 - L1MB2 LINE L1 -7 6164 5864 1167 166 5 0 chr6 11261517 11261710 -178017844 - MER20 DNA MER1_type 0 219 26 977 184 0 22 chr6 11261792 11261971 -178017583 + FAM SINE Alu 1 175 0 186 179 0 0 chr6 11261984 11262012 -178017542 + L2 LINE L2 3224 3251 -21 346 326 17 65 chr6 11262095 11262336 -178017218 + MIR SINE MIR 12 238 -24 1000 212 37 8 chr6 11262360 11262601 -178016953 - L1MB7 LINE L1 -9 6175 5928 239 53 0 26 chr6 11262764 11262802 -178016752 + (TA)n Simple_repeat Simple_repeat 1 37 0 2287 105 0 0 chr6 11262802 11263106 -178016448 - AluSx SINE Alu -8 304 1 655 216 0 8 chr6 11263562 11263687 -178015867 - FLAM_C SINE Alu -18 125 2 2133 111 0 0 chr6 11263791 11264088 -178015466 - AluSx SINE Alu -15 297 1 406 227 9 18 chr6 11264121 11264231 -178015323 + L1ME4a LINE L1 5946 6054 -67 326 298 48 0 chr6 11264880 11264984 -178014570 - MER103 DNA DNA -45 121 13 864 149 6 43 chr6 11264995 11265156 -178014398 - AluJb SINE Alu -15 297 143 1911 147 0 7 chr6 11265249 11265548 -178014006 - AluJb SINE Alu -15 297 1 1696 264 27 10 chr6 11266234 11266719 -178012835 + L1ME2 LINE L1 124 616 -5780 434 203 16 47 chr6 11266771 11266827 -178012727 + L1ME2 LINE L1 2704 2760 -3455 2066 122 3 0 chr6 11266827 11267131 -178012423 + AluSx SINE Alu 1 305 -7 434 203 16 47 chr6 11267131 11267202 -178012352 + L1ME2 LINE L1 2760 2827 -3388 696 129 54 82 chr6 11267231 11267378 -178012176 + MSTB2 LTR MaLR 260 402 -55 1521 242 14 16 chr6 11267381 11267819 -178011735 + L1ME2 LINE L1 2843 3279 -2936 520 54 68 0 chr6 11267834 11267908 -178011646 - L1PA11 LINE L1 -1 6173 6095 1046 268 37 9 chr6 11267950 11268271 -178011283 + L1ME2 LINE L1 5381 5710 -525 383 237 32 0 chr6 11268271 11268364 -178011190 + MER82 DNA MER2_type 1 96 -557 274 164 36 0 chr6 11268494 11268549 -178011005 - L1M4 LINE L1 -3316 2830 2774 2126 91 7 16 chr6 11268664 11268971 -178010583 - AluSx SINE Alu -8 304 1 784 244 39 19 chr6 11268998 11269203 -178010351 + MER82 DNA MER2_type 444 652 -1 1264 246 48 50 chr6 11269204 11269297 -178010257 + L1ME2 LINE L1 5712 5804 -429 1406 145 130 0 chr6 11269297 11269559 -178009995 + AluSg1 SINE Alu 1 296 -13 1264 246 48 50 chr6 11269559 11269982 -178009572 + L1ME2 LINE L1 5804 6227 -6 1956 127 0 10 chr6 11270061 11270361 -178009193 + AluSx SINE Alu 1 297 -15 2311 94 0 0 chr6 11270399 11270708 -178008846 + AluY SINE Alu 1 309 -2 901 253 42 4 chr6 11270828 11271065 -178008489 - MIR SINE MIR 0 262 17 2026 120 10 0 chr6 11271085 11271386 -178008168 - AluSg SINE Alu -6 304 1 406 319 28 7 chr6 11271415 11271559 -178007995 - MIR SINE MIR -4 258 112 2879 215 25 25 chr6 11271810 11272494 -178007060 + L1MD3 LINE L1 7312 7995 0 2221 99 3 0 chr6 11273247 11273549 -178006005 + AluSq SINE Alu 1 303 -10 207 235 0 0 chr6 11273707 11273758 -178005796 + (CA)n Simple_repeat Simple_repeat 2 52 0 1707 127 21 25 chr6 11275068 11275351 -178004203 - AluSx SINE Alu -30 282 1 560 210 57 16 chr6 11275712 11275836 -178003718 + AluJo/FLAM SINE Alu 3 131 -171 1254 210 15 7 chr6 11275838 11276110 -178003444 + AluSq SINE Alu 1 274 -39 759 192 58 0 chr6 11276126 11276282 -178003272 + AluSq SINE Alu 134 298 -15 683 210 128 63 chr6 11276283 11276603 -178002951 - LTR12 LTR ERV1 -24 690 237 1771 204 275 33 chr6 11276756 11277595 -178001959 - pTR5 LTR ERV1 -266 2172 744 326 292 102 15 chr6 11277599 11277731 -178001823 - MIR SINE MIR -69 139 2 2217 100 0 0 chr6 11277953 11278252 -178001302 + AluSx SINE Alu 1 299 -13 1917 141 3 95 chr6 11278660 11279029 -178000525 - MER1B DNA MER1_type -1 336 2 271 307 99 61 chr6 11279544 11279677 -177999877 + MIR SINE MIR 2 147 -115 2328 141 15 15 chr6 11279677 11280067 -177999487 + MLT1B LTR MaLR 1 390 0 271 307 99 61 chr6 11280067 11280145 -177999409 + MIR SINE MIR 147 221 -41 281 198 23 23 chr6 11280313 11280399 -177999155 + (TA)n Simple_repeat Simple_repeat 1 86 0 3749 169 119 39 chr6 11280785 11282156 -177997398 + pTR5 LTR ERV1 743 2438 0 1510 150 59 7 chr6 11282255 11282542 -177997012 - AluSq SINE Alu -11 302 1 544 228 140 0 chr6 11282542 11282678 -177996876 + AluJo SINE Alu 117 271 -41 1014 198 32 40 chr6 11282689 11282936 -177996618 - MLT2B1 LTR ERVL -274 246 2 2117 95 17 7 chr6 11282957 11283251 -177996303 + AluSx SINE Alu 2 298 -14 2537 221 104 7 chr6 11283725 11284423 -177995131 + L1MD2 LINE L1 5589 6358 -1 815 174 12 12 chr6 11284435 11284596 -177994958 + FRAM SINE Alu 1 161 -15 187 264 125 28 chr6 11284597 11284669 -177994885 - MIR SINE MIR -111 151 73 1910 99 16 60 chr6 11284691 11285005 -177994549 - AluSx SINE Alu -8 304 5 751 192 83 19 chr6 11285568 11285724 -177993830 - AluJ SINE Alu -5 307 142 5360 195 69 76 chr6 11285724 11287306 -177992248 + pTR5 LTR ERV1 31 558 -156 349 318 39 8 chr6 11287321 11287450 -177992104 - AluJ SINE Alu -159 143 11 188 307 176 39 chr6 11287818 11287971 -177991583 - MIR SINE MIR -61 201 28 2113 99 3 7 chr6 11288024 11288326 -177991228 + AluY SINE Alu 1 301 -10 5698 100 27 17 chr6 11288375 11289197 -177990357 + L1PA11 LINE L1 5343 6172 -2 1551 136 97 13 chr6 11289221 11289530 -177990024 - MER46B DNA MER2_type 0 236 27 2173 94 0 10 chr6 11289530 11289829 -177989725 - AluSx SINE Alu -16 296 1 243 156 67 0 chr6 11289980 11290025 -177989529 - MER58 DNA MER1_type 0 2420 2373 1016 112 0 20 chr6 11290030 11290182 -177989372 - L1PA8 LINE L1 -3 6169 6021 605 284 70 96 chr6 11290832 11291210 -177988344 - ERVL LTR ERVL -2270 2726 2361 1972 119 7 7 chr6 11291210 11291504 -177988050 + AluSx SINE Alu 1 294 -18 605 284 70 96 chr6 11291504 11291582 -177987972 - ERVL LTR ERVL -2635 2361 2282 1734 301 50 26 chr6 11291662 11292792 -177986762 - ERVL LTR ERVL -2723 2273 1057 1284 231 104 27 chr6 11292792 11293204 -177986350 - MLT1C LTR MaLR 0 467 24 2336 289 48 11 chr6 11293261 11293991 -177985563 - ERVL LTR ERVL -3953 1043 287 776 129 8 0 chr6 11294511 11294635 -177984919 - L1M3 LINE L1 -730 5450 5326 647 163 8 47 chr6 11294635 11294663 -177984891 - FLAM_A SINE Alu -183 128 100 2282 113 80 0 chr6 11294663 11295000 -177984554 - THE1B LTR MaLR 0 364 1 647 163 8 47 chr6 11295000 11295100 -177984454 - FLAM_A SINE Alu -211 100 5 2489 175 6 219 chr6 11295100 11295311 -177984243 - L1M3 LINE L1 -813 5333 5079 1705 191 0 3 chr6 11295311 11295610 -177983944 + AluJb SINE Alu 1 298 -14 2489 175 6 219 chr6 11295610 11296078 -177983476 - L1M3 LINE L1 -1067 5079 4912 627 80 50 50 chr6 11296078 11296178 -177983376 - AluSg/x SINE Alu -22 287 188 2489 175 6 219 chr6 11296178 11296632 -177982922 - L1M3 LINE L1 -1234 4912 4363 351 98 0 0 chr6 11296832 11296893 -177982661 + (TCTG)n Simple_repeat Simple_repeat 2 62 0 672 358 8 0 chr6 11297202 11297459 -177982095 + MERVL LTR ERVL 4180 4438 -1047 360 304 47 28 chr6 11297736 11297950 -177981604 + MERVL LTR ERVL 4810 5027 -458 268 289 103 0 chr6 11298415 11298512 -177981042 + LTR40a LTR ERVL 407 513 -6 545 353 40 15 chr6 11298842 11299114 -177980440 - ERVL LTR ERVL -4711 1053 775 1542 216 214 55 chr6 11299448 11299943 -177979611 + MLT1E1 LTR MaLR 1 598 -56 1987 118 14 0 chr6 11299943 11300230 -177979324 - AluSx SINE Alu -17 295 5 1542 216 214 55 chr6 11300230 11300298 -177979256 + MLT1E1 LTR MaLR 598 654 0 734 195 57 44 chr6 11300517 11300602 -177978952 - FAM SINE Alu -150 171 89 2185 141 102 8 chr6 11300602 11300652 -177978902 - MSTA LTR MaLR 0 428 384 204 40 0 0 chr6 11300652 11300677 -177978877 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 252 0 0 0 chr6 11300676 11300704 -177978850 + (GA)n Simple_repeat Simple_repeat 2 29 0 2185 141 102 8 chr6 11300677 11301044 -177978510 - MSTA LTR MaLR -44 384 1 734 195 57 44 chr6 11301044 11301117 -177978437 - FAM SINE Alu -232 89 11 1881 123 4 0 chr6 11301135 11301411 -177978143 - AluSx SINE Alu -15 297 21 362 246 94 94 chr6 11301464 11301716 -177977838 - LTR50 LTR ERVL -7 788 534 1489 216 56 50 chr6 11301716 11301828 -177977726 + MLT1C LTR MaLR 3 113 -354 2180 72 0 23 chr6 11301828 11302133 -177977421 + AluSc SINE Alu 1 298 -11 1489 216 56 50 chr6 11302133 11302482 -177977072 + MLT1C LTR MaLR 113 467 0 362 246 94 94 chr6 11302482 11302538 -177977016 - LTR50 LTR ERVL -260 535 480 1889 116 11 4 chr6 11303513 11303821 -177975733 - AluSx SINE Alu 0 316 7 2352 238 176 16 chr6 11303823 11304731 -177974823 - L2 LINE L2 -1929 1385 333 374 65 0 0 chr6 11304875 11304921 -177974633 - MLT1B LTR MaLR -46 344 299 1403 264 109 75 chr6 11304923 11305344 -177974210 + L2 LINE L2 1407 1812 -1502 1815 115 66 3 chr6 11305344 11305632 -177973922 - AluSg SINE Alu -2 308 3 1801 135 14 7 chr6 11305636 11305925 -177973629 - AluJb SINE Alu -20 292 2 1403 264 109 75 chr6 11305925 11306169 -177973385 + L2 LINE L2 1814 2100 -1214 1249 199 25 0 chr6 11306169 11306410 -177973144 + MLT1A1 LTR MaLR 116 362 -3 279 235 49 59 chr6 11306411 11306513 -177973041 + L2 LINE L2 2127 2227 -1087 1020 150 0 17 chr6 11306593 11306766 -177972788 - AluJo SINE Alu -14 298 129 904 71 11 44 chr6 11306766 11306854 -177972700 + (TTCC)n Simple_repeat Simple_repeat 1 262 0 904 71 11 44 chr6 11306854 11307037 -177972517 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 618 236 24 0 chr6 11307175 11307302 -177972252 - AluJo SINE Alu -172 130 1 328 284 161 7 chr6 11307405 11307560 -177971994 + L2 LINE L2 3135 3313 0 1946 125 10 10 chr6 11307662 11307789 -177971765 + AluSq SINE Alu 1 127 -186 186 43 0 0 chr6 11307789 11307812 -177971742 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1946 125 10 10 chr6 11307812 11307981 -177971573 + AluSq SINE Alu 126 297 -16 286 243 0 0 chr6 11308223 11308297 -177971257 - L1MC4 LINE L1 0 8042 7969 694 239 38 129 chr6 11309341 11309454 -177970100 - L1MC4 LINE L1 -259 7783 7661 5145 20 0 17 chr6 11309454 11310056 -177969498 + L1PA4 LINE L1 5561 6152 -3 694 239 38 129 chr6 11310056 11310415 -177969139 - L1MC4 LINE L1 -381 7661 7354 1132 196 222 71 chr6 11310764 11311187 -177968367 + MLT1D LTR MaLR 19 505 0 321 256 16 189 chr6 11311215 11311293 -177968261 + MIR SINE MIR 41 131 -131 1616 122 16 8 chr6 11311293 11311548 -177968006 - AluSg SINE Alu -10 300 44 321 256 16 189 chr6 11311548 11311618 -177967936 + MIR SINE MIR 131 211 -51 387 0 0 0 chr6 11311618 11311661 -177967893 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 1641 161 0 37 chr6 11311663 11311961 -177967593 - AluJo SINE Alu -25 287 1 321 256 16 189 chr6 11311961 11312062 -177967492 + MIR SINE MIR 212 250 -12 394 241 23 0 chr6 11312127 11312214 -177967340 - L2 LINE L2 -97 3216 3128 1779 142 28 0 chr6 11312226 11312514 -177967040 - AluJb SINE Alu -16 296 1 1567 142 19 61 chr6 11313350 11313475 -177966079 + AluJo SINE Alu 1 130 -182 2184 95 0 0 chr6 11313475 11313769 -177965785 - AluSc SINE Alu -14 295 2 1567 142 19 61 chr6 11313769 11313953 -177965601 + AluJo SINE Alu 130 297 -15 1570 153 0 39 chr6 11314018 11314327 -177965227 - AluJo SINE Alu 0 309 12 2168 91 0 7 chr6 11314397 11314706 -177964848 + AluSg SINE Alu 1 307 -3 1801 125 43 0 chr6 11314806 11315085 -177964469 + AluJo SINE Alu 1 291 -21 2124 119 0 3 chr6 11315432 11315744 -177963810 - AluSx SINE Alu -1 311 1 252 296 0 0 chr6 11316057 11316182 -177963372 + (CA)n Simple_repeat Simple_repeat 1 125 0 4279 183 58 25 chr6 11317125 11317958 -177961596 - MER21B LTR ERV1 -3 860 1 286 274 113 9 chr6 11318578 11318684 -177960870 - L1ME LINE L1 -510 5611 5495 35 0 0 0 chr6 11318856 11318891 -177960663 + AT_rich Low_complexity Low_complexity 1 35 0 2311 98 9 0 chr6 11318891 11319209 -177960345 - LTR8 LTR ERV1 -104 587 267 279 271 65 77 chr6 11319209 11319519 -177960035 + L1MC4a LINE L1 5709 6016 -105 1726 166 0 14 chr6 11319538 11319822 -177959732 + AluJo SINE Alu 12 291 -21 623 164 9 0 chr6 11320015 11320125 -177959429 - L1MA9 LINE L1 0 6312 6202 340 154 0 39 chr6 11320148 11320226 -177959328 - L1MA9 LINE L1 -186 6126 6052 576 237 147 6 chr6 11320275 11320431 -177959123 - MER5A DNA MER1_type 0 189 12 2151 156 11 8 chr6 11321751 11322111 -177957443 + MLT1A1 LTR MaLR 1 361 -4 939 174 0 0 chr6 11322175 11322347 -177957207 + AluJb SINE Alu 133 304 -8 195 42 0 0 chr6 11322438 11322462 -177957092 + (A)n Simple_repeat Simple_repeat 1 24 0 354 241 42 125 chr6 11322501 11322717 -177956837 + L1MC4 LINE L1 7817 8014 -28 697 133 9 0 chr6 11323050 11323155 -177956399 - AluSp/q SINE Alu -20 293 188 1032 152 22 11 chr6 11323155 11323333 -177956221 + AluSg/x SINE Alu 114 293 -19 1029 100 0 0 chr6 11323418 11323568 -177955986 + AluSg/x SINE Alu 156 305 -7 203 244 0 0 chr6 11323955 11324000 -177955554 - L2 LINE L2 -1 3312 3268 210 261 0 0 chr6 11324292 11324338 -177955216 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 1995 98 0 0 chr6 11324342 11324607 -177954947 - AluSx SINE Alu -11 301 37 1532 219 51 91 chr6 11324724 11325087 -177954467 - L1ME2 LINE L1 -10 6154 5821 2005 92 39 4 chr6 11325087 11325368 -177954186 - AluSx SINE Alu -21 291 1 1532 219 51 91 chr6 11325368 11325574 -177953980 - L1ME2 LINE L1 -343 5821 5608 1740 162 11 96 chr6 11325574 11325734 -177953820 - MER2 DNA MER2_type 0 345 173 775 138 0 0 chr6 11325734 11325850 -177953704 + L1PA16 LINE L1 6042 6157 -9 1740 162 11 96 chr6 11325850 11326066 -177953488 - MER2 DNA MER2_type -172 173 1 2202 103 0 7 chr6 11326094 11326396 -177953158 + AluSq SINE Alu 1 300 -13 1981 138 151 16 chr6 11326499 11326876 -177952678 + MSTA LTR MaLR 1 428 0 7931 18 0 0 chr6 11327568 11328550 -177951004 + L1PA4 LINE L1 5171 6152 -3 21 36 0 0 chr6 11328550 11328578 -177950976 + AT_rich Low_complexity Low_complexity 1 28 0 276 30 0 0 chr6 11328664 11328697 -177950857 + (TG)n Simple_repeat Simple_repeat 2 34 0 2366 106 0 0 chr6 11328989 11329291 -177950263 + AluSx SINE Alu 1 302 -10 2320 89 21 0 chr6 11329967 11330258 -177949296 + AluSc SINE Alu 2 298 -11 197 273 0 18 chr6 11330636 11330691 -177948863 - L2 LINE L2 -1 3271 3218 965 191 0 15 chr6 11330724 11330928 -177948626 + AluSq SINE Alu 1 201 -112 255 273 55 71 chr6 11331048 11331286 -177948268 + LTR12 LTR ERV1 52 285 -429 2246 96 4 0 chr6 11331414 11331719 -177947835 - AluSp SINE Alu 0 306 1 581 317 104 38 chr6 11331921 11332196 -177947358 - L2 LINE L2 -6 3266 2952 961 32 113 0 chr6 11332196 11332320 -177947234 + MER85 DNA T2_type 1 138 -1 581 317 104 38 chr6 11332320 11332467 -177947087 - L2 LINE L2 -320 2952 2816 2456 103 0 0 chr6 11332627 11332939 -177946615 + AluSx SINE Alu 1 312 0 2262 113 7 10 chr6 11333457 11333766 -177945788 - AluSq SINE Alu -5 308 1 420 270 66 72 chr6 11333845 11334302 -177945252 + L1MEd LINE L1 1094 1579 -4658 2373 84 7 7 chr6 11334302 11334611 -177944943 + AluY SINE Alu 1 309 -2 420 270 66 72 chr6 11334611 11334731 -177944823 + L1MEd LINE L1 1579 1698 -4539 1132 252 91 11 chr6 11334945 11335298 -177944256 - L1MC4a LINE L1 -1017 6791 6411 2305 111 0 0 chr6 11335302 11335599 -177943955 + AluSx SINE Alu 1 297 -15 402 240 32 19 chr6 11335629 11335783 -177943771 - L1MEd LINE L1 -4974 1145 990 327 254 167 9 chr6 11336042 11336156 -177943398 - L1MEd LINE L1 -5426 693 562 233 176 0 39 chr6 11336458 11336509 -177943045 + CT-rich Low_complexity Low_complexity 2 50 0 2317 85 9 31 chr6 11337301 11337620 -177941934 - AluSx SINE Alu 0 312 1 626 279 65 14 chr6 11338335 11338550 -177941004 - MIR SINE MIR -20 242 17 25 0 0 0 chr6 11338641 11338666 -177940888 + AT_rich Low_complexity Low_complexity 1 25 0 2191 107 0 38 chr6 11338693 11338899 -177940655 - AluSc SINE Alu 0 309 118 2441 84 0 7 chr6 11338899 11339207 -177940347 - AluY SINE Alu -5 306 1 2191 107 0 38 chr6 11339207 11339319 -177940235 - AluSc SINE Alu -191 118 3 232 250 0 0 chr6 11339348 11339392 -177940162 + L2 LINE L2 3246 3289 -24 262 240 0 0 chr6 11340087 11340137 -177939417 - MER20 DNA MER1_type 0 219 170 302 298 70 26 chr6 11340529 11340743 -177938811 + MLT1K LTR MaLR 378 609 -6 1195 204 14 0 chr6 11340743 11340959 -177938595 + MER20 DNA MER1_type 1 219 0 204 147 0 0 chr6 11341434 11341468 -177938086 - L2 LINE L2 -1316 1998 1965 895 228 58 111 chr6 11341660 11341826 -177937728 + MLT1A2 LTR MaLR 1 174 -200 2289 105 7 3 chr6 11341826 11342131 -177937423 + AluSx SINE Alu 6 311 -1 895 228 58 111 chr6 11342131 11342359 -177937195 + MLT1A2 LTR MaLR 174 374 0 1872 143 11 3 chr6 11342920 11343207 -177936347 - AluJo SINE Alu -22 290 2 2197 99 7 7 chr6 11343949 11344241 -177935313 - AluSq SINE Alu -21 292 1 1965 156 0 7 chr6 11344762 11345063 -177934491 + AluJb SINE Alu 1 299 -13 452 200 10 150 chr6 11345587 11345787 -177933767 + MER5B DNA MER1_type 6 177 -1 1985 131 28 3 chr6 11346318 11346601 -177932953 - AluSx SINE Alu -20 292 3 2368 235 19 35 chr6 11346774 11347365 -177932189 + MER50-int LTR ERV1 2754 3334 -3871 779 292 48 30 chr6 11347700 11348270 -177931284 + MER50-int LTR ERV1 2885 3705 -1547 1148 302 84 68 chr6 11348270 11349790 -177929764 + MER50-int LTR ERV1 4526 6206 -885 259 308 135 19 chr6 11349951 11350107 -177929447 + MER50-int LTR ERV1 6158 6331 -1926 8043 118 3 2 chr6 11350980 11352144 -177927410 + MER50-int LTR ERV1 3880 7197 -8 3989 164 40 8 chr6 11352145 11352850 -177926704 + MER50 LTR ERV1 1 727 -7 844 210 51 5 chr6 11352842 11353130 -177926424 + MER93b LTR ERV1 40 373 0 * 2661 113 49 58 chr6 11353356 11353557 -177925997 + LTR26B LTR ERV1 1 202 -329 2199 104 7 3 chr6 11353557 11353855 -177925699 + AluSg SINE Alu 1 299 -11 2661 113 49 58 chr6 11353855 11354139 -177925415 + LTR26B LTR ERV1 202 482 -49 193 279 33 0 chr6 11354242 11354303 -177925251 - MIR SINE MIR -139 123 61 1339 261 94 39 chr6 11354353 11355067 -177924487 + HAL1 LINE L1 1045 1797 -710 2329 106 0 0 chr6 11355235 11355546 -177924008 + AluY SINE Alu 1 311 0 662 207 53 24 chr6 11355962 11356122 -177923432 - L2 LINE L2 0 3313 3146 2331 86 0 0 chr6 11356122 11356412 -177923142 + AluSc SINE Alu 1 290 -19 258 322 66 0 chr6 11356424 11356545 -177923009 - L2 LINE L2 -1034 2280 2152 300 321 60 74 chr6 11356775 11356862 -177922692 - L2 LINE L2 -1230 2084 1997 2093 135 3 3 chr6 11356862 11357166 -177922388 + AluSq SINE Alu 1 304 -9 300 321 60 74 chr6 11357166 11357377 -177922177 - L2 LINE L2 -1317 1997 1790 1528 140 92 54 chr6 11357825 11357910 -177921644 + MLT1B LTR MaLR 1 81 -309 2003 129 0 39 chr6 11357910 11358221 -177921333 - AluSq SINE Alu -14 299 1 1528 140 92 54 chr6 11358221 11358450 -177921104 + MLT1B LTR MaLR 81 327 -63 1114 84 7 7 chr6 11358456 11358599 -177920955 + AluSp SINE Alu 1 143 -170 2217 100 30 0 chr6 11358604 11358903 -177920651 + AluSp SINE Alu 1 308 -5 431 96 27 41 chr6 11358912 11358985 -177920569 + MLT1B LTR MaLR 317 388 -2 1619 138 28 16 chr6 11359212 11359466 -177920088 + MER1B DNA MER1_type 83 339 0 201 288 0 30 chr6 11359931 11359943 -177919611 + (CATA)n Simple_repeat Simple_repeat 4 15 -52 2168 104 0 36 chr6 11359943 11360252 -177919302 + AluSq SINE Alu 1 298 -15 201 288 0 30 chr6 11360252 11360305 -177919249 + (CATA)n Simple_repeat Simple_repeat 15 67 0 24 103 0 0 chr6 11361362 11361449 -177918105 + GC_rich Low_complexity Low_complexity 1 87 0 2382 91 10 0 chr6 11362974 11363283 -177916271 + AluSx SINE Alu 1 312 0 773 276 131 8 chr6 11363331 11363689 -177915865 - L2 LINE L2 -2 3311 2910 495 220 15 23 chr6 11363707 11363839 -177915715 + MER5B DNA MER1_type 1 131 -47 2145 117 24 0 chr6 11363879 11364170 -177915384 + AluSx SINE Alu 1 298 -14 1550 147 13 0 chr6 11364340 11364565 -177914989 - AluJb SINE Alu -79 233 6 216 268 0 18 chr6 11364565 11364621 -177914933 + MER5B DNA MER1_type 4 58 -120 2131 120 0 10 chr6 11364630 11364930 -177914624 + AluSx SINE Alu 1 297 -15 249 83 0 0 chr6 11365109 11365145 -177914409 + (TA)n Simple_repeat Simple_repeat 2 37 0 2076 159 14 44 chr6 11365152 11365358 -177914196 - MLT1A1 LTR MaLR -12 353 161 1961 157 3 6 chr6 11365358 11365670 -177913884 - AluJb SINE Alu -1 311 1 2076 159 14 44 chr6 11365670 11365827 -177913727 - MLT1A1 LTR MaLR -204 161 1 2743 48 0 0 chr6 11365974 11366285 -177913269 + AluY SINE Alu 1 311 0 3643 162 15 126 chr6 11367013 11368541 -177911013 - pTR5 LTR ERV1 0 2606 1524 429 269 100 19 chr6 11368541 11368701 -177910853 - MER112 DNA MER1_type -22 238 66 2260 107 0 3 chr6 11368834 11369132 -177910422 - AluSx SINE Alu -14 298 2 284 306 132 36 chr6 11369450 11369564 -177909990 + MIR SINE MIR 11 113 -149 2524 140 0 65 chr6 11369564 11369778 -177909776 + Tigger2a DNA MER2_type 1 170 -2538 2311 106 0 6 chr6 11369778 11370089 -177909465 - AluSg SINE Alu 0 310 2 2524 140 0 65 chr6 11370089 11370338 -177909216 + Tigger2a DNA MER2_type 170 434 0 284 306 132 36 chr6 11370338 11370442 -177909112 + MIR SINE MIR 113 250 -12 2126 119 14 3 chr6 11370472 11370765 -177908789 - AluSx SINE Alu -16 296 1 1038 316 17 44 chr6 11370831 11371236 -177908318 - MLT2F LTR ERVL -7 656 263 1807 181 83 39 chr6 11371236 11371667 -177907887 - MLT1C LTR MaLR 0 467 18 605 276 124 18 chr6 11371705 11371930 -177907624 - MLT2F LTR ERVL -414 249 1 2197 102 10 3 chr6 11372197 11372491 -177907063 + AluSq SINE Alu 1 296 -17 317 184 197 7 chr6 11372994 11373141 -177906413 - Charlie7 DNA MER1_type -41 2571 2397 1302 218 124 30 chr6 11373530 11373839 -177905715 - MLT1C LTR MaLR 0 467 106 2351 97 3 3 chr6 11373839 11374148 -177905406 + AluSq SINE Alu 1 309 -4 1302 218 124 30 chr6 11374148 11374265 -177905289 - MLT1C LTR MaLR -361 106 1 249 256 47 54 chr6 11374272 11374401 -177905153 - Charlie7 DNA MER1_type -286 2326 2199 499 203 0 0 chr6 11374412 11374491 -177905063 + MER21B LTR ERV1 12 90 -773 2386 234 79 60 chr6 11374513 11374533 -177905021 + MER21B LTR ERV1 19 37 -826 2695 122 46 2 chr6 11374533 11374943 -177904611 + MSTA LTR MaLR 1 428 0 2386 234 79 60 chr6 11374943 11375606 -177903948 + MER21B LTR ERV1 37 721 -142 1921 121 67 0 chr6 11375606 11375888 -177903666 + AluSg SINE Alu 1 301 -9 2386 234 79 60 chr6 11375888 11375975 -177903579 + MER21B LTR ERV1 721 805 -58 1038 164 91 34 chr6 11376050 11376258 -177903296 - AluJo SINE Alu -6 306 87 1084 228 49 137 chr6 11376260 11376483 -177903071 - Charlie7 DNA MER1_type -453 2159 1918 461 196 52 0 chr6 11376483 11376580 -177902974 - U13 snRNA snRNA -2 102 1 1084 228 49 137 chr6 11376580 11376719 -177902835 - Charlie7 DNA MER1_type -694 1918 1860 1436 120 0 5 chr6 11376719 11376936 -177902618 + L1PA14 LINE L1 5946 6161 0 1084 228 49 137 chr6 11376936 11377128 -177902426 - Charlie7 DNA MER1_type -752 1860 1653 2039 136 51 20 chr6 11377128 11377480 -177902074 - MLT1A1 LTR MaLR 0 365 3 1010 258 59 7 chr6 11377612 11377899 -177901655 + LTR16A LTR ERVL 149 450 0 240 209 15 30 chr6 11377938 11378005 -177901549 - Charlie7 DNA MER1_type -1027 1585 1520 582 239 60 16 chr6 11378106 11378290 -177901264 - Charlie7 DNA MER1_type -2368 244 53 223 217 0 0 chr6 11379948 11379994 -177899560 - MIR SINE MIR -64 198 153 1802 125 93 3 chr6 11380012 11380301 -177899253 + MER46B DNA MER2_type 44 233 -3 728 204 26 0 chr6 11380301 11380453 -177899101 - MIR SINE MIR -105 157 2 1929 128 3 3 chr6 11380673 11380955 -177898599 + AluSx SINE Alu 19 300 -12 350 210 328 36 chr6 11381060 11381119 -177898435 - MER112 DNA MER1_type -4 252 211 2268 112 3 0 chr6 11381119 11381414 -177898140 + AluSp SINE Alu 1 296 -17 350 210 328 36 chr6 11381414 11381549 -177898005 - MER112 DNA MER1_type -45 211 1 298 254 303 0 chr6 11381923 11382045 -177897509 + MER5A DNA MER1_type 10 168 -21 201 311 0 0 chr6 11382200 11382261 -177897293 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 2253 64 19 45 chr6 11382387 11382700 -177896854 - AluY SINE Alu -6 305 1 2481 117 27 46 chr6 11382700 11382904 -177896650 - THE1B LTR MaLR -2 362 167 2056 135 10 3 chr6 11382904 11383208 -177896346 + AluSq SINE Alu 1 306 -7 2481 117 27 46 chr6 11383208 11383372 -177896182 - THE1B LTR MaLR -197 167 1 2180 132 0 0 chr6 11383942 11384253 -177895301 + AluSx SINE Alu 1 311 -1 2039 118 3 26 chr6 11384879 11385185 -177894369 - AluSx SINE Alu -13 299 1 217 308 146 77 chr6 11385228 11385277 -177894277 + L2 LINE L2 3134 3178 -94 1794 198 76 11 chr6 11385277 11385646 -177893908 + MSTD LTR MaLR 4 396 0 217 308 146 77 chr6 11385646 11385726 -177893828 + L2 LINE L2 3178 3272 0 2458 77 3 7 chr6 11385851 11386161 -177893393 - AluY SINE Alu -2 309 1 21 57 0 0 chr6 11386746 11386781 -177892773 + AT_rich Low_complexity Low_complexity 1 35 0 1177 271 72 26 chr6 11386955 11387342 -177892212 - MLT1I LTR MaLR -4 405 1 446 270 215 0 chr6 11388778 11388978 -177890576 + MIR SINE MIR 2 244 -18 820 153 164 56 chr6 11389120 11389388 -177890166 + L1MC5 LINE L1 7489 7785 -176 1716 188 55 6 chr6 11389467 11389797 -177889757 - MLT1A1 LTR MaLR 0 365 20 385 197 137 17 chr6 11389811 11389928 -177889626 - LTR16A LTR ERVL 0 450 320 253 260 64 81 chr6 11389969 11390142 -177889412 - LTR16A LTR ERVL -229 221 52 2220 120 13 0 chr6 11390916 11391215 -177888339 - AluSx SINE Alu -9 303 1 2111 114 7 3 chr6 11391223 11391513 -177888041 - AluSx SINE Alu -21 291 1 256 282 145 17 chr6 11391592 11391709 -177887845 + MER97b DNA MER1_type? 5 136 -917 758 264 59 76 chr6 11391715 11392117 -177887437 - MLT1H LTR MaLR -88 461 39 1048 275 56 13 chr6 11392188 11392562 -177886992 + L1MEc LINE L1 1656 2045 -4351 374 123 0 0 chr6 11392632 11392689 -177886865 + L1MEc LINE L1 2724 2780 -3435 * 1416 249 51 24 chr6 11392683 11393097 -177886457 - L1M4 LINE L1 -2436 3710 3286 794 211 17 0 chr6 11393120 11393300 -177886254 + L1M4 LINE L1 2825 3007 -3139 * 5769 212 38 38 chr6 11393292 11393446 -177886108 + L1M4 LINE L1 3839 3991 -2177 2134 121 10 10 chr6 11393446 11393751 -177885803 - AluSq SINE Alu -8 305 1 5769 212 38 38 chr6 11393751 11394654 -177884900 + L1M4 LINE L1 3991 4897 -1271 1815 129 0 0 chr6 11394654 11394902 -177884652 + AluSx SINE Alu 46 293 -19 5769 212 38 38 chr6 11394902 11395427 -177884127 + L1M4 LINE L1 4897 5420 -748 2485 62 0 3 chr6 11395613 11395917 -177883637 - AluY SINE Alu -8 303 1 2392 73 0 13 chr6 11395968 11396283 -177883271 + AluY SINE Alu 1 311 0 2276 90 7 3 chr6 11396327 11396627 -177882927 - AluSc SINE Alu -8 301 1 264 239 0 0 chr6 11397023 11397069 -177882485 + AluSp SINE Alu 136 181 -122 2234 78 32 0 chr6 11397107 11397388 -177882166 + AluY SINE Alu 1 290 -21 2001 113 0 34 chr6 11397667 11397800 -177881754 + AluSx SINE Alu 1 137 -171 2313 53 3 7 chr6 11397800 11398138 -177881416 + AluY SINE Alu 1 337 0 2001 113 0 34 chr6 11398138 11398321 -177881233 + AluSx SINE Alu 137 308 0 816 183 0 71 chr6 11398727 11398896 -177880658 - FRAM SINE Alu -20 156 1 2365 99 0 0 chr6 11399443 11399745 -177879809 - AluSx SINE Alu -10 302 1 24 0 0 0 chr6 11399809 11399833 -177879721 + AT_rich Low_complexity Low_complexity 1 24 0 2413 190 114 44 chr6 11400524 11401046 -177878508 + L1MC5 LINE L1 7046 7649 -312 2230 114 0 0 chr6 11401046 11401343 -177878211 - AluSx SINE Alu -15 297 1 2413 190 114 44 chr6 11401343 11401645 -177877909 + L1MC5 LINE L1 7649 7928 -33 468 239 79 65 chr6 11402013 11402190 -177877364 + MIR SINE MIR 21 195 -62 1302 109 171 0 chr6 11402339 11402532 -177877022 - MER30 DNA MER1_type -1 229 4 2390 91 0 7 chr6 11402806 11403113 -177876441 - AluSq SINE Alu -8 305 1 539 241 0 9 chr6 11403379 11403487 -177876067 + FLAM_A SINE Alu 8 114 -28 2166 114 7 0 chr6 11403488 11403786 -177875768 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr6 11404315 11404337 -177875217 + AT_rich Low_complexity Low_complexity 1 22 0 578 307 33 37 chr6 11404653 11404894 -177874660 + L2 LINE L2 2831 3070 -243 3796 159 18 35 chr6 11404905 11405365 -177874189 + L1PB4 LINE L1 4888 5354 -818 2183 125 0 3 chr6 11405365 11405662 -177873892 - AluSg SINE Alu -14 296 1 3796 159 18 35 chr6 11405662 11406505 -177873049 + L1PB4 LINE L1 5354 6165 -7 27 49 0 0 chr6 11406544 11406585 -177872969 + AT_rich Low_complexity Low_complexity 1 41 0 950 234 56 9 chr6 11406762 11406976 -177872578 - MER58A DNA MER1_type 0 224 1 21 0 0 0 chr6 11408057 11408078 -177871476 + AT_rich Low_complexity Low_complexity 1 21 0 2318 96 0 0 chr6 11408078 11408371 -177871183 - AluSg SINE Alu -17 293 1 225 260 0 68 chr6 11408808 11408881 -177870673 + MER5A DNA MER1_type 7 74 -115 429 238 67 0 chr6 11409400 11409505 -177870049 + L2 LINE L2 3160 3271 -1 564 264 43 6 chr6 11409641 11409804 -177869750 - MIR SINE MIR -32 230 62 2225 98 3 10 chr6 11410157 11410463 -177869091 - AluJb SINE Alu -5 307 4 23 54 0 0 chr6 11411040 11411077 -177868477 + GC_rich Low_complexity Low_complexity 1 37 0 210 288 8 40 chr6 11411137 11411262 -177868292 + G-rich Low_complexity Low_complexity 6 126 0 301 274 109 106 chr6 11411449 11411806 -177867748 + L1M2 LINE L1 772 1129 -5720 189 0 0 0 chr6 11412107 11412128 -177867426 + (TG)n Simple_repeat Simple_repeat 2 22 0 261 0 0 0 chr6 11412162 11412191 -177867363 + (TG)n Simple_repeat Simple_repeat 2 30 0 596 261 29 85 chr6 11412482 11412754 -177866800 + L2 LINE L2 3052 3308 -5 2021 141 0 10 chr6 11413262 11413568 -177865986 - AluSx SINE Alu -9 303 1 395 310 244 0 chr6 11414677 11414874 -177864680 + MIR SINE MIR 17 261 -1 1434 181 79 3 chr6 11414972 11415264 -177864290 - MER33 DNA MER1_type -4 320 7 1144 177 47 0 chr6 11415921 11416153 -177863401 + L1MA4 LINE L1 6054 6296 -4 372 308 84 11 chr6 11416295 11416456 -177863098 + MIR SINE MIR 20 192 -65 182 278 45 99 chr6 11416456 11416679 -177862875 + L2 LINE L2 2925 3135 -178 24 0 0 0 chr6 11416737 11416761 -177862793 + AT_rich Low_complexity Low_complexity 1 24 0 1023 110 0 0 chr6 11417079 11417250 -177862304 - AluSc SINE Alu 0 316 146 271 238 119 66 chr6 11417392 11417528 -177862026 - MIR SINE MIR -66 196 55 217 213 33 0 chr6 11417682 11417743 -177861811 + (TA)n Simple_repeat Simple_repeat 1 63 0 758 182 6 3 chr6 11418336 11418668 -177860886 + CT-rich Low_complexity Low_complexity 1 333 0 283 241 9 103 chr6 11420155 11420271 -177859283 + MER5A DNA MER1_type 40 144 -45 223 184 0 0 chr6 11420518 11420556 -177858998 + L2 LINE L2 3219 3256 -16 2166 94 0 4 chr6 11420556 11420867 -177858687 - AluSx SINE Alu 0 318 9 2172 108 0 7 chr6 11420886 11421194 -177858360 - AluSx SINE Alu 0 312 2 221 348 11 11 chr6 11422483 11422575 -177856979 - L2 LINE L2 -411 2903 2812 493 261 84 28 chr6 11422789 11422931 -177856623 + L2 LINE L2 3163 3312 -1 245 220 40 0 chr6 11423008 11423058 -177856496 + MER2 DNA MER2_type 294 345 0 180 0 0 0 chr6 11423233 11423253 -177856301 + (T)n Simple_repeat Simple_repeat 1 20 0 205 315 157 9 chr6 11423424 11423532 -177856022 - MIR SINE MIR -57 151 28 665 289 150 23 chr6 11423669 11424596 -177854958 + L1ME2 LINE L1 4877 5950 -214 2456 71 0 3 chr6 11424804 11425113 -177854441 + AluY SINE Alu 1 308 -3 493 179 82 30 chr6 11425530 11425664 -177853890 - MIR SINE MIR -6 256 116 509 275 50 27 chr6 11426104 11426311 -177853243 - MIR SINE MIR -13 249 41 1066 170 22 36 chr6 11426347 11426571 -177852983 - AluJb SINE Alu -5 307 87 556 250 17 72 chr6 11426682 11426862 -177852692 + MIR SINE MIR 71 240 -22 350 312 150 23 chr6 11427574 11427747 -177851807 + L3 LINE CR1 987 1181 -396 717 311 56 28 chr6 11427882 11428204 -177851350 + L3 LINE CR1 1197 1527 -50 891 98 74 0 chr6 11428510 11428721 -177850833 + L1MA8 LINE L1 6011 6284 -7 181 308 154 0 chr6 11431403 11431494 -177848060 + MIR SINE MIR 61 165 -97 21 57 0 0 chr6 11433853 11433888 -177845666 + AT_rich Low_complexity Low_complexity 1 35 0 242 316 36 42 chr6 11434308 11434520 -177845034 - L2 LINE L2 -281 2991 2779 2092 118 7 0 chr6 11435552 11435865 -177843689 + AluSx SINE Alu 1 315 0 558 310 146 22 chr6 11436207 11436610 -177842944 + L3 LINE CR1 630 1082 -495 519 239 197 0 chr6 11436915 11437057 -177842497 + MER5A DNA MER1_type 9 178 -11 2130 164 47 28 chr6 11437058 11437527 -177842027 - Looper DNA T2_type -992 566 89 437 194 279 30 chr6 11437689 11437854 -177841700 - L2 LINE L2 0 3313 3108 341 231 188 17 chr6 11438287 11438404 -177841150 + MIR SINE MIR 112 248 -14 265 241 0 0 chr6 11438665 11438719 -177840835 - Tigger8 DNA MER2_type -581 85 32 317 247 0 37 chr6 11439414 11439495 -177840059 + GA-rich Low_complexity Low_complexity 3 80 0 469 302 11 0 chr6 11440203 11440382 -177839172 - L1MEc LINE L1 -4601 1795 1615 1486 155 71 7 chr6 11440396 11440692 -177838862 - L1ME1 LINE L1 -182 5984 5670 715 224 14 5 chr6 11441059 11441086 -177838468 - L1P4 LINE L1 -476 5689 5664 183 42 0 0 chr6 11441086 11441110 -177838444 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1493 135 9 0 chr6 11441112 11441327 -177838227 - AluSg/x SINE Alu -23 289 73 715 224 14 5 chr6 11441327 11441465 -177838089 - L1P4 LINE L1 -501 5664 5522 469 288 52 69 chr6 11441592 11441825 -177837729 - MER115 DNA AcHobo -464 229 1 255 274 102 59 chr6 11442647 11442833 -177836721 + L2 LINE L2 3120 3313 0 2435 75 0 7 chr6 11444208 11444513 -177835041 - AluY SINE Alu -8 303 1 2384 97 0 0 chr6 11445274 11445572 -177833982 + AluSg SINE Alu 1 298 -12 616 338 86 19 chr6 11445636 11446071 -177833483 + L2 LINE L2 2590 3036 -236 1083 120 87 22 chr6 11446096 11446362 -177833192 + MER44D DNA MER2_type 1 669 -36 345 308 48 0 chr6 11446440 11446544 -177833010 + L2 LINE L2 3164 3272 0 2490 158 35 26 chr6 11447933 11448396 -177831158 - MLT1C LTR MaLR 0 467 1 649 210 6 60 chr6 11448418 11448585 -177830969 + MIR SINE MIR 95 252 -10 373 261 54 23 chr6 11449597 11449727 -177829827 + MIR SINE MIR 35 168 -94 2115 128 0 0 chr6 11450422 11450719 -177828835 - AluSx SINE Alu -15 297 1 328 314 51 0 chr6 11450756 11450874 -177828680 - MIR3 SINE MIR -6 202 79 209 227 0 0 chr6 11451162 11451206 -177828348 + A-rich Low_complexity Low_complexity 1 44 0 2163 111 0 3 chr6 11451499 11451796 -177827758 - AluSx SINE Alu -16 296 1 4077 39 2 2 chr6 11451989 11452455 -177827099 + L1PA8 LINE L1 5703 6168 -4 228 278 74 97 chr6 11452539 11452755 -177826799 + MIR SINE MIR 34 244 -18 186 207 52 17 chr6 11453334 11453392 -177826162 - L2 LINE L2 -249 3064 3005 * 963 259 95 30 chr6 11453379 11453715 -177825839 - L2 LINE L2 -431 2883 2526 261 386 0 11 chr6 11454669 11454757 -177824797 + MIR SINE MIR 17 103 -105 * 373 336 0 42 chr6 11454754 11454897 -177824657 - L2 LINE L2 -2 3270 3134 392 268 109 45 chr6 11455625 11455923 -177823631 + L1MC4 LINE L1 5712 5990 -1971 2358 89 0 0 chr6 11455923 11456215 -177823339 + AluSg SINE Alu 2 293 -17 392 268 109 45 chr6 11456215 11457305 -177822249 + L1MC4 LINE L1 5990 7146 -815 2376 125 105 20 chr6 11457305 11457697 -177821857 - MSTB LTR MaLR -1 425 1 392 268 109 45 chr6 11457697 11457757 -177821797 + L1MC4 LINE L1 7146 7201 -760 * 700 234 101 102 chr6 11457748 11458499 -177821055 + L1MC5 LINE L1 7238 7911 -50 2092 76 0 0 chr6 11458577 11458828 -177820726 - AluSq SINE Alu -22 291 41 526 101 0 0 chr6 11458829 11458898 -177820656 - AluS SINE Alu -242 71 3 2004 94 8 4 chr6 11458908 11459174 -177820380 - AluY SINE Alu -10 301 35 240 234 0 16 chr6 11461041 11461105 -177818449 + MER112 DNA MER1_type 17 79 -181 2454 88 0 3 chr6 11461105 11461411 -177818143 - AluSq SINE Alu -8 305 1 738 174 0 0 chr6 11461412 11461527 -177818027 - FRAM SINE Alu -9 167 53 1808 142 0 62 chr6 11461588 11461913 -177817641 + AluSx SINE Alu 1 305 -7 805 176 0 0 chr6 11462565 11462684 -177816870 - FLAM_C SINE Alu -23 120 2 419 259 56 62 chr6 11462715 11462774 -177816780 + MER112 DNA MER1_type 99 157 -103 2357 65 0 0 chr6 11462774 11463088 -177816466 - AluSc SINE Alu 0 314 1 419 259 56 62 chr6 11463088 11463189 -177816365 + MER112 DNA MER1_type 157 259 -1 350 291 93 7 chr6 11464052 11464203 -177815351 - MIR SINE MIR -30 232 69 340 154 77 0 chr6 11464278 11464343 -177815211 - MIR SINE MIR -20 242 173 2149 95 50 0 chr6 11465943 11466226 -177813328 - AluSq SINE Alu -16 297 1 2297 104 3 0 chr6 11467009 11467308 -177812246 - AluSp SINE Alu -7 306 7 21638 31 4 4 chr6 11467977 11471236 -177808318 + L1PA3 LINE L1 2881 6154 -1 2222 120 0 0 chr6 11471281 11471581 -177807973 + AluSx SINE Alu 3 302 -10 21 57 0 0 chr6 11474287 11474322 -177805232 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr6 11474537 11474562 -177804992 + AT_rich Low_complexity Low_complexity 1 25 0 278 210 25 118 chr6 11476206 11476257 -177803297 + MER102b DNA MER1_type 233 268 -1160 1889 106 92 21 chr6 11476257 11476539 -177803015 - AluSx SINE Alu -10 302 1 278 210 25 118 chr6 11476539 11476606 -177802948 + MER102b DNA MER1_type 268 340 -1 2391 94 3 0 chr6 11476982 11477290 -177802264 + AluSx SINE Alu 1 309 -3 252 0 0 0 chr6 11477290 11477318 -177802236 + (TA)n Simple_repeat Simple_repeat 2 29 0 4496 112 26 9 chr6 11477822 11478477 -177801077 + L1PA16 LINE L1 5488 6153 -13 322 314 91 43 chr6 11479068 11479278 -177800276 + L2 LINE L2 3044 3263 -9 207 221 44 29 chr6 11479740 11479808 -177799746 + L2 LINE L2 2992 3060 -212 2170 102 3 7 chr6 11480211 11480506 -177799048 + AluSx SINE Alu 1 294 -18 2069 133 0 0 chr6 11480898 11481184 -177798370 + AluSg1 SINE Alu 1 286 -23 2108 114 7 0 chr6 11482062 11482342 -177797212 - AluSx SINE Alu -26 286 5 431 277 23 28 chr6 11482535 11482712 -177796842 + MLT1J LTR MaLR 3 178 -333 739 176 0 0 chr6 11482770 11482889 -177796665 + FLAM_C SINE Alu 2 120 -13 385 311 60 44 chr6 11482961 11483212 -177796342 + MLT1J LTR MaLR 243 497 -14 411 266 90 78 chr6 11483378 11483621 -177795933 + L1ME4a LINE L1 5663 5913 -208 1928 123 34 3 chr6 11483621 11483914 -177795640 + AluSq SINE Alu 1 302 -11 411 266 90 78 chr6 11483914 11484027 -177795527 + L1ME4a LINE L1 5913 6023 -98 2288 87 0 7 chr6 11484109 11484407 -177795147 - AluSc SINE Alu 0 309 14 556 294 165 41 chr6 11484659 11485071 -177794483 + L2 LINE L2 2052 2514 -800 548 321 143 35 chr6 11485160 11485644 -177793910 + L2 LINE L2 2756 3283 -30 271 283 165 40 chr6 11485696 11485933 -177793621 - L1ME4a LINE L1 -199 5922 5645 2544 46 0 13 chr6 11485933 11486238 -177793316 + AluY SINE Alu 1 301 -10 271 283 165 40 chr6 11486238 11486272 -177793282 - L1ME4a LINE L1 -476 5645 5617 827 305 185 36 chr6 11486817 11487785 -177791769 + L2 LINE L2 162 1273 -2041 526 259 110 80 chr6 11487907 11488100 -177791454 - L1ME4a LINE L1 -2179 3967 3781 378 0 0 0 chr6 11488100 11488142 -177791412 + (CA)n Simple_repeat Simple_repeat 2 43 0 526 259 110 80 chr6 11488142 11488558 -177790996 - L1ME4a LINE L1 -2365 3781 3340 615 289 77 37 chr6 11488624 11488949 -177790605 - L1ME4a LINE L1 -2736 3410 3073 189 174 0 65 chr6 11488982 11489028 -177790526 - MER5B DNA MER1_type -13 165 123 530 253 125 36 chr6 11489116 11489448 -177790106 - L1M4 LINE L1 -2069 4077 3718 2088 127 3 0 chr6 11489449 11489766 -177789788 - AluSq SINE Alu 0 318 1 308 323 102 61 chr6 11489788 11490101 -177789453 - L1M4 LINE L1 -2439 3707 3382 925 290 73 66 chr6 11490110 11490776 -177788778 + L2 LINE L2 2310 3048 -265 44 0 0 0 chr6 11490988 11491032 -177788522 + AT_rich Low_complexity Low_complexity 1 44 0 955 177 39 0 chr6 11491032 11491213 -177788341 + MER46A DNA MER2_type 49 236 0 203 329 14 43 chr6 11491213 11491283 -177788271 + L2 LINE L2 3244 3311 -2 2429 68 7 0 chr6 11491341 11491635 -177787919 + AluY SINE Alu 2 297 -14 1953 188 70 26 chr6 11492607 11493107 -177786447 + Charlie1b DNA MER1_type 1 522 -1 2262 100 0 7 chr6 11494502 11494803 -177784751 - AluSq SINE Alu -14 299 1 2568 71 3 0 chr6 11495699 11496009 -177783545 - AluSp SINE Alu -2 311 1 2312 148 19 10 chr6 11496014 11496427 -177783127 - L1MB4 LINE L1 0 6180 5764 2132 157 82 17 chr6 11497039 11497441 -177782113 + MSTA LTR MaLR 1 428 0 1833 164 0 17 chr6 11497780 11498067 -177781487 - AluJo SINE Alu -30 282 1 2174 112 60 65 chr6 11498427 11498468 -177781086 - L1MA9 LINE L1 -1 6311 6271 1784 191 0 7 chr6 11498468 11498771 -177780783 + AluJo SINE Alu 1 301 -11 2174 112 60 65 chr6 11498771 11498834 -177780720 - L1MA9 LINE L1 -41 6271 6209 873 125 0 23 chr6 11498834 11498962 -177780592 + FLAM_C SINE Alu 1 125 -8 2174 112 60 65 chr6 11498962 11499319 -177780235 - L1MA9 LINE L1 -103 6209 5851 398 264 236 0 chr6 11499769 11499951 -177779603 - MIR SINE MIR -20 242 18 996 254 166 15 chr6 11501567 11501965 -177777589 + L2 LINE L2 2856 3313 0 21 0 0 0 chr6 11502782 11502803 -177776751 + AT_rich Low_complexity Low_complexity 1 21 0 200 220 140 0 chr6 11503207 11503257 -177776297 - L3 LINE CR1 -92 1485 1429 1941 151 10 7 chr6 11504151 11504455 -177775099 - AluJb SINE Alu -7 305 1 252 246 18 0 chr6 11504484 11504541 -177775013 - L2 LINE L2 -1 3312 3255 1455 188 12 4 chr6 11504638 11504893 -177774661 + AluJb SINE Alu 1 257 -55 314 263 15 22 chr6 11505327 11505464 -177774090 + L1M4 LINE L1 2732 2867 -3279 258 214 131 96 chr6 11505733 11505962 -177773592 + L1M4 LINE L1 2155 2391 -3755 1153 264 105 87 chr6 11506087 11507219 -177772335 + L1M4 LINE L1 2732 3915 -2231 1623 165 32 21 chr6 11507219 11507557 -177771997 + L1MA9 LINE L1 5965 6308 -4 1153 264 105 87 chr6 11507557 11508366 -177771188 + L1M4 LINE L1 3915 4708 -1438 468 259 102 42 chr6 11508501 11509057 -177770497 + L1ME3A LINE L1 1370 1992 -4729 912 232 72 78 chr6 11509402 11509802 -177769752 + L1ME3A LINE L1 2452 2853 -3687 2386 104 3 0 chr6 11509802 11510109 -177769445 - AluSp SINE Alu -5 308 1 912 232 72 78 chr6 11510109 11510583 -177768971 + L1ME3A LINE L1 2853 3322 -3218 2403 88 3 7 chr6 11510583 11510891 -177768663 + AluSx SINE Alu 1 307 -5 912 232 72 78 chr6 11510891 11510983 -177768571 + L1ME3A LINE L1 3322 3413 -3127 1181 270 100 26 chr6 11510987 11511827 -177767727 + L1ME3A LINE L1 5441 6348 -216 337 327 81 54 chr6 11511859 11512082 -177767472 + L1ME3A LINE L1 6321 6549 -15 7221 29 7 0 chr6 11513293 11514581 -177764973 - L1PA4 LINE L1 -4 6151 4855 295 221 0 0 chr6 11514761 11514829 -177764725 - L1MA9 LINE L1 -64 7667 7600 12955 187 43 20 chr6 11514835 11516461 -177763093 - L1MA9 LINE L1 -234 7497 5910 2052 141 0 0 chr6 11516461 11516758 -177762796 - AluY SINE Alu -14 297 1 12955 187 43 20 chr6 11516758 11519085 -177760469 - L1MA9 LINE L1 -1821 5910 3462 2154 91 42 0 chr6 11519097 11519382 -177760172 - AluSx SINE Alu -15 297 1 202 179 18 18 chr6 11519522 11519578 -177759976 + (TAA)n Simple_repeat Simple_repeat 2 57 0 932 207 8 68 chr6 11519635 11519804 -177759750 + MER58A DNA MER1_type 2 155 -2265 1779 109 109 7 chr6 11519804 11520078 -177759476 + AluSg SINE Alu 3 304 -6 932 207 8 68 chr6 11520078 11520145 -177759409 + MER58A DNA MER1_type 155 224 0 2009 136 7 3 chr6 11520913 11521200 -177758354 - AluSx SINE Alu -24 288 1 774 222 62 0 chr6 11522013 11522189 -177757365 + MER5A DNA MER1_type 3 189 0 915 187 111 0 chr6 11522197 11522395 -177757159 + MER58A DNA MER1_type 1 220 -4 2273 110 0 0 chr6 11522543 11522835 -177756719 + AluSx SINE Alu 1 292 -20 2119 131 0 0 chr6 11523617 11523914 -177755640 - AluJb SINE Alu -15 297 1 1857 147 7 0 chr6 11524414 11524700 -177754854 - AluJb SINE Alu -18 294 7 2213 106 6 22 chr6 11525632 11525944 -177753610 - AluSx SINE Alu -5 307 1 23 0 0 0 chr6 11526060 11526083 -177753471 + AT_rich Low_complexity Low_complexity 1 23 0 1837 137 81 0 chr6 11526406 11526691 -177752863 + AluSq SINE Alu 1 308 -5 1290 208 4 0 chr6 11526763 11526994 -177752560 + AluJo SINE Alu 5 236 -76 21 0 0 0 chr6 11527013 11527034 -177752520 + AT_rich Low_complexity Low_complexity 1 21 0 7828 70 9 42 chr6 11527150 11528257 -177751297 + MER11C LTR ERVK 1 1071 0 2202 129 0 3 chr6 11528521 11528824 -177750730 + AluSx SINE Alu 6 307 -5 21 0 0 0 chr6 11529299 11529320 -177750234 + AT_rich Low_complexity Low_complexity 1 21 0 2701 71 37 0 chr6 11530248 11530599 -177748955 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr6 11531147 11531178 -177748376 + AT_rich Low_complexity Low_complexity 1 31 0 2501 67 0 3 chr6 11531613 11531925 -177747629 + AluY SINE Alu 1 311 0 2129 102 0 0 chr6 11531941 11532216 -177747338 + AluSg SINE Alu 29 303 -7 1092 147 0 138 chr6 11532505 11532831 -177746723 + MER33 DNA MER1_type 44 324 0 1406 66 0 0 chr6 11532964 11533131 -177746423 + AluY SINE Alu 133 299 -12 366 174 224 0 chr6 11533452 11533550 -177746004 + LTR36 LTR ERV1 3 122 -489 212 0 36 0 chr6 11533551 11533579 -177745975 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2514 51 3 3 chr6 11533592 11533886 -177745668 + AluY SINE Alu 1 294 -17 6071 65 39 0 chr6 11533887 11534675 -177744879 + L1PA11 LINE L1 5322 6140 -34 469 45 76 0 chr6 11534700 11534766 -177744788 + L1PA11 LINE L1 6104 6174 0 330 85 0 0 chr6 11534826 11534873 -177744681 + L1PA12 LINE L1 6107 6153 -15 551 99 77 0 chr6 11534888 11534979 -177744575 + L1PA12 LINE L1 6071 6168 0 885 226 123 57 chr6 11534987 11535080 -177744474 + LTR36 LTR ERV1 107 192 -419 2081 108 18 0 chr6 11535080 11535358 -177744196 + AluSx SINE Alu 1 283 -29 231 61 0 0 chr6 11535358 11535391 -177744163 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 885 226 123 57 chr6 11535391 11535628 -177743926 + LTR36 LTR ERV1 191 460 -151 15541 197 26 29 chr6 11535628 11536763 -177742791 + L1P5 LINE L1 691 1827 -5040 2474 80 3 0 chr6 11536763 11537063 -177742491 + AluSc SINE Alu 1 301 -8 15541 197 26 29 chr6 11537063 11537369 -177742185 + L1P5 LINE L1 1827 2132 -4735 967 122 0 0 chr6 11537369 11537508 -177742046 - AluY SINE Alu 0 311 173 15541 197 26 29 chr6 11537508 11538594 -177740960 + L1P5 LINE L1 2132 3219 -3648 2323 91 0 10 chr6 11538594 11538890 -177740664 - AluSx SINE Alu -19 293 1 15541 197 26 29 chr6 11538890 11540551 -177739003 + L1P5 LINE L1 3219 4882 -1985 2322 98 3 13 chr6 11540551 11540858 -177738696 + AluSx SINE Alu 1 304 -8 15541 197 26 29 chr6 11540858 11541468 -177738086 + L1P5 LINE L1 4882 5492 -1375 2131 123 0 3 chr6 11541468 11541761 -177737793 + AluSp SINE Alu 5 296 -17 15541 197 26 29 chr6 11541761 11542149 -177737405 + L1P5 LINE L1 5492 6149 -718 339 80 53 0 chr6 11542399 11542458 -177737096 - L1M2 LINE L1 -550 5630 5572 1039 88 0 0 chr6 11543565 11543702 -177735852 + AluY SINE Alu 170 306 -5 2394 80 3 13 chr6 11546169 11546480 -177733074 + AluSp SINE Alu 1 308 -5 334 260 68 73 chr6 11546643 11546835 -177732719 - MIR SINE MIR -70 192 2 2122 116 20 0 chr6 11547412 11547704 -177731850 + AluSq SINE Alu 4 301 -12 1767 161 10 43 chr6 11548230 11548535 -177731019 - AluSx SINE Alu -17 295 1 27 19 0 57 chr6 11548600 11548653 -177730901 + AT_rich Low_complexity Low_complexity 1 50 0 2359 71 7 3 chr6 11548698 11548995 -177730559 + AluSq SINE Alu 1 298 -15 2310 86 3 0 chr6 11550005 11550297 -177729257 + AluSp SINE Alu 1 293 -20 601 96 0 0 chr6 11550514 11550597 -177728957 + AluS SINE Alu 2 84 -229 3122 68 47 9 chr6 11550597 11551022 -177728532 + LTR10D LTR ERV1 1 441 -72 23 0 0 0 chr6 11551815 11551838 -177727716 + AT_rich Low_complexity Low_complexity 1 23 0 232 250 140 30 chr6 11551838 11551938 -177727616 + L2 LINE L2 3154 3264 -8 282 198 0 34 chr6 11552627 11552751 -177726803 + MER5A DNA MER1_type 6 189 0 2180 91 35 0 chr6 11553003 11553290 -177726264 + AluSp SINE Alu 1 297 -16 222 253 121 10 chr6 11553510 11553609 -177725945 - MIR SINE MIR -10 252 143 1867 155 14 0 chr6 11553705 11553995 -177725559 + AluJo SINE Alu 3 296 -16 461 224 65 77 chr6 11554083 11554329 -177725225 + L2 LINE L2 2883 3125 -188 204 378 63 0 chr6 11554479 11554590 -177724964 - L2 LINE L2 -788 2526 2409 522 70 0 0 chr6 11554616 11554687 -177724867 + (CA)n Simple_repeat Simple_repeat 2 72 0 180 0 0 0 chr6 11554862 11554882 -177724672 + (A)n Simple_repeat Simple_repeat 1 20 0 6157 134 41 10 chr6 11555179 11556381 -177723173 + L1MA5 LINE L1 4713 5972 -328 2191 119 3 0 chr6 11556381 11556684 -177722870 + AluSq SINE Alu 1 304 -9 6157 134 41 10 chr6 11556684 11557015 -177722539 + L1MA5 LINE L1 5972 6292 -8 2176 97 3 3 chr6 11557141 11557431 -177722123 + AluSg SINE Alu 1 290 -20 260 266 0 130 chr6 11557860 11557906 -177721648 + MIR SINE MIR 104 154 -108 2635 52 0 3 chr6 11557906 11558216 -177721338 + AluSc SINE Alu 1 309 0 260 266 0 130 chr6 11558216 11558338 -177721216 + MIR SINE MIR 154 250 -12 245 245 50 50 chr6 11558525 11558664 -177720890 + MER5B DNA MER1_type 10 148 -30 2337 75 3 3 chr6 11559587 11559879 -177719675 + AluSx SINE Alu 1 292 -20 198 0 0 0 chr6 11560074 11560096 -177719458 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1923 122 30 16 chr6 11561642 11562041 -177717513 - AluJb SINE Alu 0 407 5 199 71 48 0 chr6 11562502 11562544 -177717010 + T-rich Low_complexity Low_complexity 3 46 0 2329 77 10 3 chr6 11562775 11563073 -177716481 + AluSc SINE Alu 1 300 -9 1978 103 47 23 chr6 11563680 11563980 -177715574 + AluSg SINE Alu 1 307 -3 489 34 0 0 chr6 11564643 11564702 -177714852 + (CA)n Simple_repeat Simple_repeat 1 59 0 2256 88 3 0 chr6 11564796 11565106 -177714448 + AluSp SINE Alu 1 311 0 230 186 10 157 chr6 11565508 11565610 -177713944 - MARNA DNA Mariner -224 362 276 2190 123 3 0 chr6 11565971 11566280 -177713274 - AluSp SINE Alu -3 310 1 454 212 12 0 chr6 11567541 11567626 -177711928 - MER58B DNA MER1_type -49 292 207 2216 112 0 7 chr6 11567636 11567932 -177711622 + AluSc SINE Alu 1 294 -15 721 219 133 34 chr6 11568460 11568693 -177710861 + MIR SINE MIR 5 260 -2 2287 109 3 0 chr6 11569161 11569472 -177710082 - AluSx SINE Alu 0 312 1 1170 47 0 0 chr6 11569474 11569603 -177709951 - AluSp SINE Alu -181 132 4 706 251 96 9 chr6 11570818 11571037 -177708517 - MIR SINE MIR -6 256 19 1454 183 29 18 chr6 11573208 11573518 -177706036 + AluJo SINE Alu 1 313 0 287 188 26 145 chr6 11573986 11574017 -177705537 - MIR SINE MIR 0 262 229 2060 128 0 46 chr6 11574017 11574344 -177705210 + AluJb SINE Alu 1 312 0 360 0 0 0 chr6 11574348 11574388 -177705166 + (TA)n Simple_repeat Simple_repeat 2 41 0 287 188 26 145 chr6 11574388 11574468 -177705086 - MIR SINE MIR -36 226 160 1821 134 144 0 chr6 11574889 11575188 -177704366 + Ricksha DNA DNA 9 350 -2896 666 267 61 58 chr6 11575256 11575323 -177704231 - L2 LINE L2 -508 2806 2741 2400 75 0 3 chr6 11575323 11575616 -177703938 - AluY SINE Alu -19 292 1 2272 91 14 3 chr6 11575616 11575913 -177703641 - AluSq SINE Alu -13 300 1 666 267 61 58 chr6 11575913 11576121 -177703433 - L2 LINE L2 -572 2742 2529 687 206 24 41 chr6 11576129 11576299 -177703255 + LTR9 LTR ERV1 446 612 0 722 157 64 0 chr6 11576324 11576470 -177703084 + HUERS-P3b LTR ERV1 3616 4588 -1242 * 1108 136 12 0 chr6 11576467 11576629 -177702925 + HUERS-P3b LTR ERV1 5894 6057 -1361 1094 147 28 0 chr6 11576628 11576796 -177702758 + HUERS-P3b LTR ERV1 3308 6617 -801 * 576 324 138 20 chr6 11576804 11577113 -177702441 - L2 LINE L2 -783 2531 2260 1127 184 29 19 chr6 11577113 11577183 -177702371 - MER3 DNA MER1_type 0 209 141 1586 161 97 7 chr6 11577183 11577462 -177702092 + AluSx SINE Alu 1 304 -8 1127 184 29 19 chr6 11577462 11577598 -177701956 - MER3 DNA MER1_type -68 141 1 576 324 138 20 chr6 11577598 11577942 -177701612 - L2 LINE L2 -1054 2260 1801 563 129 0 0 chr6 11578061 11578146 -177701408 + MER53 DNA DNA 1 85 -104 7481 136 26 11 chr6 11578149 11578435 -177701119 - Tigger3b DNA MER2_type -1797 1231 951 2330 117 0 0 chr6 11578435 11578744 -177700810 + AluSp SINE Alu 1 309 -4 7481 136 26 11 chr6 11578744 11578989 -177700565 - Tigger3b DNA MER2_type -2077 951 711 246 32 0 0 chr6 11578989 11579020 -177700534 + (TA)n Simple_repeat Simple_repeat 1 31 0 3864 68 4 19 chr6 11579021 11579537 -177700017 - L1PA8 LINE L1 -13 6159 5652 7481 136 26 11 chr6 11579537 11580212 -177699342 - Tigger3b DNA MER2_type -2316 712 4 358 161 138 0 chr6 11580215 11580302 -177699252 + MER53 DNA DNA 87 185 -4 21 0 0 0 chr6 11580428 11580449 -177699105 + AT_rich Low_complexity Low_complexity 1 21 0 706 207 18 18 chr6 11581531 11581695 -177697859 + FAM SINE Alu 1 164 -11 273 267 139 10 chr6 11582353 11582454 -177697100 - L2 LINE L2 -7 3306 3193 2381 93 0 10 chr6 11582468 11582778 -177696776 - AluSx SINE Alu -5 307 1 2218 97 24 0 chr6 11582787 11583077 -177696477 - AluY SINE Alu -14 297 1 21 36 0 0 chr6 11583403 11583431 -177696123 + AT_rich Low_complexity Low_complexity 1 28 0 4465 182 32 23 chr6 11583752 11583824 -177695730 + L1MC3 LINE L1 6806 6876 -909 2539 176 42 33 chr6 11583824 11583928 -177695626 - MER66B LTR ERV1 0 486 384 2123 111 10 0 chr6 11583928 11584217 -177695337 - AluSx SINE Alu -20 292 1 2539 176 42 33 chr6 11584217 11584594 -177694960 - MER66B LTR ERV1 -102 384 1 4465 182 32 23 chr6 11584594 11585383 -177694171 + L1MC3 LINE L1 6876 7679 -106 2457 129 67 5 chr6 11585383 11585786 -177693768 + MSTA LTR MaLR 1 428 0 4465 182 32 23 chr6 11585786 11585884 -177693670 + L1MC3 LINE L1 7679 7775 -10 2225 114 0 3 chr6 11585884 11586190 -177693364 + AluSq SINE Alu 1 305 -8 1542 159 3 28 chr6 11586199 11586489 -177693065 + L1MA3 LINE L1 5798 6080 -225 1354 207 45 25 chr6 11586489 11586802 -177692752 - MLT2C2 LTR ERVL -39 481 120 2199 101 13 16 chr6 11587524 11587832 -177691722 - AluSp SINE Alu -6 307 1 2359 104 0 0 chr6 11587848 11588155 -177691399 - AluSc SINE Alu -2 307 1 332 117 6 17 chr6 11588403 11588445 -177691109 - MLT2C1 LTR ERVL -5 657 616 438 20 0 0 chr6 11588445 11588496 -177691058 + (TG)n Simple_repeat Simple_repeat 2 52 0 332 117 6 17 chr6 11588496 11588524 -177691030 - MLT2C1 LTR ERVL -46 616 474 2140 164 25 3 chr6 11588609 11588961 -177690593 - MLT2C1 LTR ERVL -40 480 1 704 323 48 20 chr6 11588989 11589342 -177690212 + L2 LINE L2 2947 3309 -4 485 327 108 35 chr6 11589360 11589758 -177689796 - L3 LINE CR1 -156 1421 995 2089 122 20 10 chr6 11589759 11589926 -177689628 - AluSq SINE Alu -7 306 133 2267 81 42 0 chr6 11589926 11590211 -177689343 - AluSg1 SINE Alu -12 297 1 2089 122 20 10 chr6 11590211 11590346 -177689208 - AluSq SINE Alu -180 133 1 269 209 0 47 chr6 11590477 11590625 -177688929 + G-rich Low_complexity Low_complexity 3 143 0 1287 139 23 59 chr6 11590625 11590916 -177688638 - MER52C LTR ERV1 -772 506 91 710 221 27 72 chr6 11590916 11591138 -177688416 - L2 LINE L2 -895 2419 2208 4805 43 33 41 chr6 11591772 11592825 -177686729 - MER11A LTR ERVK 0 1266 1 1072 277 28 52 chr6 11592995 11593141 -177686413 + L1ME LINE L1 4 152 -5918 1837 114 103 4 chr6 11593141 11593412 -177686142 + AluSx SINE Alu 1 298 -14 1072 277 28 52 chr6 11593412 11593691 -177685863 + L1ME LINE L1 152 419 -5651 783 253 42 35 chr6 11593958 11594409 -177685145 + L1ME LINE L1 531 984 -5086 2315 84 0 29 chr6 11594409 11594717 -177684837 + AluSc SINE Alu 1 299 -10 24 32 0 0 chr6 11594812 11594843 -177684711 + AT_rich Low_complexity Low_complexity 1 31 0 2338 102 3 0 chr6 11595673 11595976 -177683578 + AluSp SINE Alu 1 304 -9 2667 130 28 35 chr6 11596115 11596212 -177683342 - L1MB1 LINE L1 -153 6036 5940 1959 143 0 3 chr6 11596212 11596499 -177683055 - AluJb SINE Alu -16 296 11 2667 130 28 35 chr6 11596499 11596833 -177682721 - L1MB1 LINE L1 -249 5940 5606 2364 87 0 19 chr6 11596833 11597145 -177682409 - AluSx SINE Alu -4 308 3 2667 130 28 35 chr6 11597145 11597173 -177682381 - L1MB1 LINE L1 -583 5606 5579 1453 143 4 39 chr6 11597175 11597454 -177682100 + L1MC3 LINE L1 7514 7782 -3 1931 108 73 14 chr6 11597675 11597962 -177681592 + AluSx SINE Alu 1 304 -8 2340 105 3 6 chr6 11597962 11598276 -177681278 + AluSq SINE Alu 1 313 0 215 268 24 37 chr6 11599011 11599093 -177680461 + L3 LINE CR1 1230 1310 -267 2516 83 0 0 chr6 11599108 11599410 -177680144 - AluSx SINE Alu -10 302 1 719 285 88 53 chr6 11599417 11599792 -177679762 - MLT1K LTR MaLR -16 572 185 2164 128 0 7 chr6 11599825 11600129 -177679425 + AluSx SINE Alu 1 302 -10 308 276 89 8 chr6 11600211 11600334 -177679220 + L3 LINE CR1 1336 1468 -109 249 257 22 44 chr6 11600413 11600549 -177679005 + L2 LINE L2 2553 2685 -629 788 281 106 13 chr6 11600564 11600866 -177678688 - L2 LINE L2 0 3313 2984 2564 137 15 36 chr6 11600938 11601019 -177678535 + L1MA8 LINE L1 5827 5908 -383 2087 136 0 19 chr6 11601019 11601327 -177678227 + AluSx SINE Alu 1 302 -10 2564 137 15 36 chr6 11601327 11601718 -177677836 + L1MA8 LINE L1 5908 6289 -2 213 167 0 0 chr6 11601721 11601775 -177677779 + T-rich Low_complexity Low_complexity 1 54 0 246 326 0 0 chr6 11601794 11601880 -177677674 - L1MC4 LINE L1 -1005 7037 6952 2198 123 0 19 chr6 11601996 11602304 -177677250 - AluSq SINE Alu -11 302 1 426 276 64 70 chr6 11602383 11602840 -177676714 + L1MEd LINE L1 1094 1579 -4658 2360 87 7 7 chr6 11602840 11603149 -177676405 + AluY SINE Alu 1 309 -2 426 276 64 70 chr6 11603149 11603269 -177676285 + L1MEd LINE L1 1579 1698 -4539 1113 257 89 9 chr6 11603483 11603821 -177675733 - L1MC4a LINE L1 -1017 6791 6427 2305 111 0 0 chr6 11603840 11604137 -177675417 + AluSx SINE Alu 1 297 -15 402 240 32 19 chr6 11604167 11604321 -177675233 - L1MEd LINE L1 -4974 1145 990 452 259 152 32 chr6 11604346 11604694 -177674860 - L1MEd LINE L1 -5168 951 562 233 176 0 39 chr6 11604996 11605047 -177674507 + CT-rich Low_complexity Low_complexity 2 50 0 2317 89 0 29 chr6 11605838 11606153 -177673401 - AluSp SINE Alu -7 306 1 2235 96 0 0 chr6 11606170 11606452 -177673102 - AluSx SINE Alu -26 286 5 2896 147 4 7 chr6 11606468 11606932 -177672622 - L1PB3 LINE L1 -4 6150 5688 2057 96 0 4 chr6 11610693 11610963 -177668591 + AluSx SINE Alu 1 269 -43 2169 175 110 13 chr6 11610963 11611427 -177668127 + LTR22 LTR ERVK 1 509 0 222 37 0 0 chr6 11611447 11611474 -177668080 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2036 137 0 0 chr6 11612613 11612931 -177666623 - AluSx SINE Alu 0 318 1 1178 156 5 10 chr6 11613255 11613454 -177666100 - Tigger1 DNA MER2_type -4 2414 2217 1232 158 0 0 chr6 11613455 11613639 -177665915 + AluSx SINE Alu 1 184 -128 3136 140 16 26 chr6 11613645 11613984 -177665570 - Tigger1 DNA MER2_type -187 2231 1897 1448 85 73 170 chr6 11613984 11614313 -177665241 + AluSx SINE Alu 1 297 -15 3136 140 16 26 chr6 11614313 11614474 -177665080 - Tigger1 DNA MER2_type -521 1897 1736 1809 152 21 0 chr6 11614494 11614784 -177664770 - AluJo SINE Alu -16 296 1 22 0 0 0 chr6 11615273 11615295 -177664259 + AT_rich Low_complexity Low_complexity 1 22 0 2318 81 3 0 chr6 11615791 11616074 -177663480 + AluSg SINE Alu 1 284 -26 348 83 0 0 chr6 11616090 11616138 -177663416 + (CA)n Simple_repeat Simple_repeat 1 48 0 2052 102 76 0 chr6 11616138 11616413 -177663141 + AluSx SINE Alu 1 296 -16 820 235 0 6 chr6 11616663 11616842 -177662712 - AluJb SINE Alu -6 306 129 1290 140 27 31 chr6 11617008 11617230 -177662324 - MLT1F LTR MaLR -8 534 314 1326 162 9 0 chr6 11617230 11617446 -177662108 - MLT1B LTR MaLR -4 386 169 1133 201 0 19 chr6 11617450 11617659 -177661895 - AluJo SINE Alu -21 291 87 991 173 6 0 chr6 11617659 11617827 -177661727 - MLT1B LTR MaLR -221 169 1 554 208 0 104 chr6 11617827 11617971 -177661583 - MLT1F LTR MaLR -222 320 192 1930 154 3 25 chr6 11618273 11618592 -177660962 + AluJb SINE Alu 1 312 0 2322 84 10 0 chr6 11619126 11619424 -177660130 - AluSp SINE Alu -12 301 1 270 179 36 0 chr6 11619491 11619547 -177660007 - MLT1J LTR MaLR -344 167 110 487 268 83 62 chr6 11620931 11621284 -177658270 - MLT1L LTR MaLR -83 532 95 2231 117 0 0 chr6 11622424 11622722 -177656832 + AluSx SINE Alu 1 298 -14 2338 101 0 0 chr6 11623785 11624082 -177655472 - AluSp SINE Alu -16 297 1 2605 53 0 0 chr6 11624085 11624388 -177655166 - AluY SINE Alu -8 303 1 1115 155 0 0 chr6 11624393 11624561 -177654993 - FAM SINE Alu -3 172 5 2178 125 0 0 chr6 11624678 11624975 -177654579 + AluSx SINE Alu 1 297 -15 2111 149 0 0 chr6 11625005 11625313 -177654241 + AluJb SINE Alu 1 308 -4 455 273 30 23 chr6 11625754 11625886 -177653668 - MIR SINE MIR -128 134 2 2483 63 0 10 chr6 11626120 11626423 -177653131 - AluY SINE Alu -11 300 1 2184 75 0 8 chr6 11626637 11626904 -177652650 - AluSg SINE Alu -45 265 1 2332 110 0 0 chr6 11627622 11627922 -177651632 - AluSx SINE Alu -12 300 1 216 0 0 0 chr6 11629100 11629124 -177650430 + (CA)n Simple_repeat Simple_repeat 2 25 0 193 184 0 0 chr6 11629183 11629221 -177650333 - L2 LINE L2 -10 3303 3266 1374 153 14 9 chr6 11629887 11630102 -177649452 + AluJb SINE Alu 5 220 -92 367 186 0 0 chr6 11630102 11630161 -177649393 + AluSp/q SINE Alu 155 213 -90 409 94 0 0 chr6 11630161 11630214 -177649340 - AluSq/x SINE Alu -172 141 89 * 567 152 0 0 chr6 11630209 11630301 -177649253 + AluSg/x SINE Alu 206 297 -15 330 26 0 0 chr6 11630302 11630341 -177649213 + (TA)n Simple_repeat Simple_repeat 2 40 0 460 213 147 37 chr6 11630356 11630492 -177649062 + MER33 DNA MER1_type 10 160 -164 809 138 0 9 chr6 11630494 11630610 -177648944 + AluJo/FLAM SINE Alu 3 117 -195 1882 147 0 27 chr6 11630613 11630913 -177648641 - AluJb SINE Alu -20 292 1 37 39 0 0 chr6 11630927 11630978 -177648576 + AT_rich Low_complexity Low_complexity 1 51 0 319 231 31 0 chr6 11630980 11631045 -177648509 - AluJ/FRAM SINE Alu -12 290 224 * 662 130 45 90 chr6 11631042 11631191 -177648363 + MER33 DNA MER1_type 154 295 -2290 2191 114 23 0 chr6 11631191 11631490 -177648064 - AluSg SINE Alu -4 306 1 662 130 45 90 chr6 11631490 11631517 -177648037 + MER33 DNA MER1_type 295 322 -2 2034 138 7 0 chr6 11631576 11631867 -177647687 - AluJb SINE Alu -19 293 1 2302 100 3 3 chr6 11631985 11632284 -177647270 + AluSq SINE Alu 1 299 -14 2437 83 0 19 chr6 11632804 11633117 -177646437 + AluSx SINE Alu 6 312 0 449 84 14 0 chr6 11633119 11633190 -177646364 + (TA)n Simple_repeat Simple_repeat 1 72 0 2084 104 0 17 chr6 11633198 11633487 -177646067 + AluSq SINE Alu 14 297 -16 1958 139 0 0 chr6 11634051 11634332 -177645222 - AluJb SINE Alu -27 285 5 2288 118 0 0 chr6 11634955 11635261 -177644293 + AluSx SINE Alu 1 306 -6 2099 114 40 3 chr6 11635615 11635914 -177643640 + AluSg SINE Alu 1 310 0 2448 100 0 0 chr6 11636126 11636436 -177643118 - AluSg SINE Alu 0 310 1 811 180 174 6 chr6 11636712 11636890 -177642664 + AluJb SINE Alu 86 293 -19 252 252 52 52 chr6 11636920 11637035 -177642519 + MIR SINE MIR 111 225 -37 210 71 0 0 chr6 11637634 11637662 -177641892 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 449 208 74 40 chr6 11637662 11637811 -177641743 - L2 LINE L2 -13 3300 3147 1384 234 116 48 chr6 11637812 11638172 -177641382 + L1ME3A LINE L1 5646 6049 -121 2293 87 0 13 chr6 11638172 11638472 -177641082 - AluSx SINE Alu -16 296 1 1384 234 116 48 chr6 11638472 11638595 -177640959 + L1ME3A LINE L1 6049 6162 -8 2279 99 10 0 chr6 11638614 11638917 -177640637 + AluSx SINE Alu 1 306 -6 269 177 81 0 chr6 11639185 11639247 -177640307 - L2 LINE L2 -707 2607 2541 1138 176 80 99 chr6 11639284 11639462 -177640092 - MSTB2 LTR MaLR 0 457 288 2217 81 34 14 chr6 11639462 11639597 -177639957 + AluSq SINE Alu 1 132 -181 2137 75 6 90 chr6 11639597 11639919 -177639635 + AluY SINE Alu 1 295 -16 2217 81 34 14 chr6 11639919 11640079 -177639475 + AluSq SINE Alu 132 302 -11 1138 176 80 99 chr6 11640079 11640252 -177639302 - MSTB2 LTR MaLR -169 288 113 648 204 55 11 chr6 11640256 11640433 -177639121 + MLT1C LTR MaLR 58 231 -159 358 127 0 0 chr6 11640438 11640501 -177639053 + L1MB8 LINE L1 6115 6177 -1 2776 172 37 57 chr6 11640516 11640661 -177638893 - MER6A DNA MER2_type -261 604 458 2086 102 53 3 chr6 11640661 11640946 -177638608 - AluSg SINE Alu -11 299 1 2776 172 37 57 chr6 11640946 11641393 -177638161 - MER6A DNA MER2_type -407 458 24 657 247 26 53 chr6 11641431 11641609 -177637945 - MER114 LTR ERV -427 221 49 2227 97 3 0 chr6 11641609 11641897 -177637657 + AluSq SINE Alu 1 289 -24 657 247 26 53 chr6 11641897 11641945 -177637609 - MER114 LTR ERV -599 49 1 2130 118 0 26 chr6 11642691 11642997 -177636557 - AluSx SINE Alu -14 298 1 2209 118 16 0 chr6 11643654 11643958 -177635596 + AluJb SINE Alu 4 312 0 618 201 158 18 chr6 11644444 11644608 -177634946 + MER105 DNA DNA 7 193 -11 2305 90 3 3 chr6 11645395 11645694 -177633860 - AluSp SINE Alu -14 299 1 21 36 0 0 chr6 11645904 11645932 -177633622 + AT_rich Low_complexity Low_complexity 1 28 0 1988 94 16 84 chr6 11645975 11646177 -177633377 - AluSq SINE Alu -15 298 124 2199 129 0 0 chr6 11646177 11646486 -177633068 - AluSx SINE Alu -3 309 1 1988 94 16 84 chr6 11646486 11646603 -177632951 - AluSq SINE Alu -189 124 1 742 191 0 15 chr6 11646649 11646780 -177632774 - FLAM_C SINE Alu -4 129 1 2004 114 22 4 chr6 11647135 11647452 -177632102 + AluSx SINE Alu 9 330 0 24 0 0 0 chr6 11647519 11647543 -177632011 + AT_rich Low_complexity Low_complexity 1 24 0 2455 84 10 0 chr6 11647839 11648137 -177631417 + AluSg SINE Alu 1 301 -9 995 265 0 5 chr6 11648705 11648920 -177630634 - MER20 DNA MER1_type -5 214 1 2130 137 0 0 chr6 11649428 11649728 -177629826 - AluSx SINE Alu -12 300 1 2227 116 0 3 chr6 11650487 11650789 -177628765 - AluSq SINE Alu -10 303 3 2231 100 34 0 chr6 11650791 11651082 -177628472 - AluSq SINE Alu -12 301 1 2237 103 3 0 chr6 11651227 11651541 -177628013 - AluSp SINE Alu 0 313 1 637 222 26 37 chr6 11651779 11651968 -177627586 + L2 LINE L2 3126 3312 -1 395 251 232 24 chr6 11652016 11652223 -177627331 - L3 LINE CR1 -157 1420 1171 281 280 130 10 chr6 11652765 11652965 -177626589 - L3 LINE CR1 -820 757 534 197 361 50 20 chr6 11653032 11653234 -177626320 - L3 LINE CR1 -1222 355 148 324 292 100 38 chr6 11653746 11653986 -177625568 - MLT1J LTR MaLR 0 511 257 237 214 71 0 chr6 11654045 11654101 -177625453 - MIR SINE MIR -114 148 89 2269 134 0 0 chr6 11654685 11654991 -177624563 + AluSx SINE Alu 1 306 -6 183 42 0 0 chr6 11655098 11655122 -177624432 + (TG)n Simple_repeat Simple_repeat 2 25 0 2100 170 115 3 chr6 11655128 11655511 -177624043 - MSTB LTR MaLR 0 426 1 339 225 295 25 chr6 11655996 11656196 -177623358 + Charlie2 DNA MER1_type 72 325 -2537 1609 122 106 47 chr6 11656220 11656295 -177623259 + MER44D DNA MER2_type 1 70 -2421 2189 99 14 3 chr6 11656295 11656587 -177622967 + AluSx SINE Alu 1 295 -17 1609 122 106 47 chr6 11656587 11656831 -177622723 + MER44D DNA MER2_type 70 609 0 192 77 0 0 chr6 11657070 11657096 -177622458 + (T)n Simple_repeat Simple_repeat 1 26 0 278 220 0 0 chr6 11657100 11657159 -177622395 + Charlie2a DNA MER1_type 72 130 -2652 729 183 89 0 chr6 11657185 11657354 -177622200 + Charlie2a DNA MER1_type 828 1011 -1851 429 194 37 19 chr6 11657359 11657467 -177622087 + Charlie2a DNA MER1_type 2753 2862 0 2241 114 0 13 chr6 11657493 11657801 -177621753 - AluSx SINE Alu -7 305 2 32 57 0 0 chr6 11657845 11657898 -177621656 + AT_rich Low_complexity Low_complexity 1 53 0 1585 169 83 4 chr6 11657970 11658236 -177621318 + AluJb SINE Alu 11 297 -15 2520 53 7 10 chr6 11658376 11658675 -177620879 - AluY SINE Alu -13 298 1 201 167 0 0 chr6 11658733 11658769 -177620785 + (TTA)n Simple_repeat Simple_repeat 3 38 0 22 0 0 0 chr6 11659981 11660003 -177619551 + AT_rich Low_complexity Low_complexity 1 22 0 2260 99 3 0 chr6 11660005 11660289 -177619265 - AluSq SINE Alu -28 285 1 2236 82 4 0 chr6 11662201 11662513 -177617041 - AluY SINE Alu 0 313 1 634 316 118 24 chr6 11662514 11662980 -177616574 - L2 LINE L2 -597 2717 2208 2383 83 10 0 chr6 11663374 11663674 -177615880 + AluSx SINE Alu 1 303 -9 480 18 0 0 chr6 11663992 11664049 -177615505 + (TG)n Simple_repeat Simple_repeat 1 57 0 2143 90 14 4 chr6 11664049 11664326 -177615228 - AluSq SINE Alu -33 280 1 2366 106 0 0 chr6 11664528 11664830 -177614724 + AluSx SINE Alu 1 302 -10 2314 92 20 0 chr6 11665506 11665798 -177613756 + AluSc SINE Alu 2 299 -10 197 273 0 18 chr6 11666176 11666231 -177613323 - L2 LINE L2 -1 3271 3218 2323 83 6 19 chr6 11666264 11666576 -177612978 + AluSq SINE Alu 1 308 -5 2456 103 0 0 chr6 11667094 11667406 -177612148 - AluSx SINE Alu 0 312 1 581 317 104 38 chr6 11667566 11667713 -177611841 + L2 LINE L2 2816 2952 -320 961 32 113 0 chr6 11667713 11667837 -177611717 - MER85 DNA T2_type -1 138 1 581 317 104 38 chr6 11667837 11668112 -177611442 + L2 LINE L2 2952 3266 -6 2261 92 4 0 chr6 11668314 11668619 -177610935 + AluSp SINE Alu 1 306 0 2047 117 10 17 chr6 11668828 11669127 -177610427 - AluSx SINE Alu -15 297 1 1819 88 146 8 chr6 11669187 11669447 -177610107 - AluSg1 SINE Alu -13 296 1 2049 132 4 0 chr6 11670164 11670474 -177609080 + AluSx SINE Alu 1 311 0 258 106 136 30 chr6 11671056 11671122 -177608432 + MER66A LTR ERV1 302 374 -104 765 173 0 23 chr6 11671138 11671271 -177608283 + AluJb SINE Alu 5 134 -178 258 267 151 0 chr6 11671276 11671362 -177608192 + Charlie2 DNA MER1_type 44 142 -2720 2475 219 106 33 chr6 11671491 11672253 -177607301 + Charlie2 DNA MER1_type 1856 2700 -162 2192 107 0 29 chr6 11672253 11672561 -177606993 + AluSg SINE Alu 1 299 -11 2475 219 106 33 chr6 11672561 11672735 -177606819 + Charlie2 DNA MER1_type 2700 2860 -2 2360 93 0 10 chr6 11673609 11673921 -177605633 + AluSc SINE Alu 1 309 0 187 280 160 13 chr6 11674146 11674221 -177605333 + MIR SINE MIR 58 143 -119 186 103 0 0 chr6 11675477 11675506 -177604048 + (ATG)n Simple_repeat Simple_repeat 1 29 0 235 167 103 26 chr6 11675565 11675643 -177603911 - MIR SINE MIR -70 192 109 394 280 127 11 chr6 11675747 11675936 -177603618 + MIR SINE MIR 47 257 -5 565 265 116 5 chr6 11676331 11676546 -177603008 - MIR SINE MIR -1 261 23 1760 160 13 32 chr6 11677012 11677324 -177602230 - AluJo SINE Alu -6 306 1 2212 114 0 13 chr6 11677658 11677957 -177601597 - AluSx SINE Alu -17 295 1 21 0 0 0 chr6 11677959 11677980 -177601574 + AT_rich Low_complexity Low_complexity 1 21 0 2233 82 51 10 chr6 11678434 11678728 -177600826 - AluSc SINE Alu -3 306 1 293 253 32 21 chr6 11678882 11678977 -177600577 - MIR SINE MIR -33 229 134 2180 83 0 86 chr6 11680466 11680793 -177598761 + AluSq SINE Alu 1 299 -14 2303 102 0 10 chr6 11681120 11681423 -177598131 - AluSq SINE Alu -13 300 1 2187 102 3 20 chr6 11682368 11682672 -177596882 - AluSq SINE Alu -14 299 1 22 35 0 0 chr6 11682672 11682701 -177596853 + AT_rich Low_complexity Low_complexity 1 29 0 2126 130 0 7 chr6 11683605 11683906 -177595648 + AluSx SINE Alu 1 299 -13 2036 150 35 5 chr6 11683906 11684273 -177595281 - L1MC2 LINE L1 -30 6314 5934 1393 98 60 102 chr6 11684273 11684539 -177595015 + AluSx SINE Alu 58 312 0 1639 126 51 63 chr6 11684631 11684914 -177594640 + L1MC3 LINE L1 6686 6966 -819 2426 77 0 3 chr6 11684914 11685213 -177594341 + AluY SINE Alu 2 299 -12 1639 126 51 63 chr6 11685213 11685262 -177594292 + L1MC3 LINE L1 6966 7014 -771 186 71 0 0 chr6 11685263 11685291 -177594263 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 1886 118 4 0 chr6 11685300 11685554 -177594000 + AluSx SINE Alu 9 263 -49 1855 91 8 0 chr6 11685563 11685806 -177593748 + AluSp SINE Alu 63 307 -6 2256 138 11 17 chr6 11685836 11686198 -177593356 - LTR8 LTR ERV1 0 691 332 713 151 32 8 chr6 11686188 11686314 -177593240 + LTR19A LTR ERV1 358 486 0 * 1504 195 61 3 chr6 11686314 11686627 -177592927 + MER58B DNA MER1_type 9 339 -2 302 238 119 23 chr6 11686673 11686846 -177592708 + L1MC/D LINE L1 5530 5724 -545 478 139 0 0 chr6 11686846 11686918 -177592636 - AluS SINE Alu -241 72 1 2268 104 13 3 chr6 11687020 11687327 -177592227 + AluSq SINE Alu 1 310 -3 226 330 75 71 chr6 11687492 11687731 -177591823 + L2 LINE L2 3009 3248 -24 2400 91 0 0 chr6 11688228 11688525 -177591029 - AluSx SINE Alu -15 297 1 1439 175 35 14 chr6 11688783 11689068 -177590486 + AluJo SINE Alu 10 300 -12 2026 131 3 7 chr6 11690264 11690561 -177588993 - AluSx SINE Alu -16 296 1 460 311 84 41 chr6 11691474 11691985 -177587569 - L2 LINE L2 -27 3245 2717 633 165 0 0 chr6 11692008 11692105 -177587449 - AluSx SINE Alu -24 286 190 828 137 8 0 chr6 11692111 11692242 -177587312 - AluSx SINE Alu -181 132 1 419 314 268 18 chr6 11692244 11692915 -177586639 - L2 LINE L2 -601 2713 1875 2196 92 3 3 chr6 11692987 11693280 -177586274 - AluSp SINE Alu -20 293 1 668 101 7 130 chr6 11693307 11693445 -177586109 + 5S rRNA rRNA 1 121 0 1881 164 0 3 chr6 11693476 11693781 -177585773 + AluSx SINE Alu 1 304 -8 4796 34 0 4 chr6 11695388 11695948 -177583606 + LTR6B LTR ERV1 1 558 0 292 293 9 19 chr6 11696739 11696845 -177582709 - MIR SINE MIR -80 128 24 410 267 118 12 chr6 11697092 11697253 -177582301 + MIR SINE MIR 82 259 -3 1603 187 0 23 chr6 11697678 11697983 -177581571 + AluSx SINE Alu 1 298 -14 199 273 26 13 chr6 11699140 11699217 -177580337 + L2 LINE L2 2416 2493 -821 220 329 111 28 chr6 11699549 11699692 -177579862 - MIR SINE MIR -44 164 8 540 208 145 13 chr6 11700495 11700654 -177578900 - MIR SINE MIR -21 241 62 486 301 155 30 chr6 11700705 11701217 -177578337 + L2 LINE L2 2665 3313 0 2195 119 0 25 chr6 11701442 11701760 -177577794 + AluSx SINE Alu 1 310 -2 184 330 91 23 chr6 11701889 11701977 -177577577 + L2 LINE L2 3174 3267 -5 1604 170 43 7 chr6 11703051 11703327 -177576227 + AluJo SINE Alu 1 286 -26 1900 133 3 7 chr6 11703379 11703664 -177575890 - AluSg SINE Alu -26 284 1 1481 115 13 21 chr6 11703695 11703930 -177575624 - LTR12 LTR ERV1 0 714 482 3580 152 162 29 chr6 11703930 11704659 -177574895 - LTR12 LTR ERV1 0 826 1 2168 114 10 0 chr6 11704749 11705047 -177574507 - AluSq SINE Alu -12 301 1 1025 175 80 0 chr6 11705154 11705354 -177574200 + L1MDa LINE L1 16 231 -6309 1210 130 0 0 chr6 11705354 11705531 -177574023 + AluSg/x SINE Alu 123 299 -13 2202 91 50 0 chr6 11705554 11705851 -177573703 + AluSq SINE Alu 1 312 -1 617 242 89 111 chr6 11705888 11706302 -177573252 + L1MDa LINE L1 275 697 -5843 1797 130 26 0 chr6 11706302 11706571 -177572983 + AluSx SINE Alu 1 276 -36 2612 64 0 0 chr6 11706571 11706882 -177572672 - AluY SINE Alu 0 311 1 617 242 89 111 chr6 11706882 11706970 -177572584 + L1MDa LINE L1 695 1081 -5459 645 209 0 14 chr6 11706971 11707110 -177572444 + MER7A DNA MER2_type 2 136 -210 2236 106 0 0 chr6 11707110 11707420 -177572134 + AluSx SINE Alu 1 310 0 253 282 155 29 chr6 11707440 11707614 -177571940 - L2 LINE L2 -4 3309 3114 226 297 84 24 chr6 11707843 11708092 -177571462 - L1 LINE L1 -1797 4349 4086 2078 124 21 0 chr6 11708416 11708707 -177570847 + AluSx SINE Alu 2 298 -14 2206 107 0 0 chr6 11708709 11709013 -177570541 + AluSx SINE Alu 3 306 0 320 284 77 86 chr6 11709015 11709536 -177570018 + L1 LINE L1 4493 5006 -1140 * 472 176 123 65 chr6 11709512 11709682 -177569872 + L1MA7 LINE L1 6117 6287 -4 2062 131 3 3 chr6 11709745 11710035 -177569519 + AluSx SINE Alu 1 290 -22 956 112 15 0 chr6 11710043 11710177 -177569377 - LTR8 LTR ERV1 -544 147 12 2332 88 0 0 chr6 11710181 11710478 -177569076 + AluY SINE Alu 1 297 -14 275 234 66 66 chr6 11710547 11710774 -177568780 + L1 LINE L1 5164 5390 -756 1652 194 36 3 chr6 11710830 11711159 -177568395 + MER58B DNA MER1_type 1 340 -1 2272 87 10 7 chr6 11711366 11711664 -177567890 - AluSc SINE Alu -10 299 1 2438 88 0 0 chr6 11711666 11711972 -177567582 - AluSc SINE Alu -3 306 1 207 322 50 94 chr6 11712236 11712438 -177567116 + L2 LINE L2 3009 3201 -71 3171 126 50 116 chr6 11712440 11713176 -177566378 + LTR12 LTR ERV1 1 688 0 602 179 0 0 chr6 11713182 11713277 -177566277 + LTR12 LTR ERV1 620 714 0 2409 76 17 0 chr6 11714000 11714301 -177565253 - AluSx SINE Alu -6 306 1 270 179 36 0 chr6 11714368 11714424 -177565130 - MLT1J LTR MaLR -344 167 110 487 268 83 62 chr6 11715808 11716161 -177563393 - MLT1L LTR MaLR -83 532 95 2231 117 0 0 chr6 11717300 11717598 -177561956 + AluSx SINE Alu 1 298 -14 1015 136 26 26 chr6 11718205 11718396 -177561158 + L1MA9 LINE L1 6118 6308 -4 1405 301 72 22 chr6 11718412 11719216 -177560338 + L1M4 LINE L1 3876 4719 -1427 637 255 102 42 chr6 11719340 11719899 -177559655 + L1MEd LINE L1 1045 1670 -4726 903 254 88 64 chr6 11720133 11720640 -177558914 + L1MEd LINE L1 2037 2540 -3675 2377 105 3 0 chr6 11720640 11720945 -177558609 - AluSp SINE Alu -7 306 1 903 254 88 64 chr6 11720945 11721418 -177558136 + L1MEd LINE L1 2540 3000 -3215 2312 109 0 0 chr6 11721419 11721721 -177557833 + AluSx SINE Alu 1 302 -10 23 54 0 0 chr6 11723180 11723217 -177556337 + GC_rich Low_complexity Low_complexity 1 37 0 189 0 0 0 chr6 11723739 11723760 -177555794 + (TG)n Simple_repeat Simple_repeat 2 22 0 261 0 0 0 chr6 11723794 11723823 -177555731 + (TG)n Simple_repeat Simple_repeat 2 30 0 531 261 29 85 chr6 11724114 11724386 -177555168 + L2 LINE L2 3052 3308 -5 2044 141 0 10 chr6 11724894 11725200 -177554354 - AluSx SINE Alu -9 303 1 337 310 244 0 chr6 11726309 11726506 -177553048 + MIR SINE MIR 17 261 -1 1411 181 79 3 chr6 11726604 11726896 -177552658 - MER33 DNA MER1_type -4 320 7 1089 177 47 0 chr6 11727553 11727785 -177551769 + L1MA4 LINE L1 6054 6296 -4 333 308 84 11 chr6 11727927 11728088 -177551466 + MIR SINE MIR 20 192 -65 24 0 0 0 chr6 11728369 11728393 -177551161 + AT_rich Low_complexity Low_complexity 1 24 0 1038 110 0 0 chr6 11728711 11728882 -177550672 - AluSc SINE Alu 0 316 146 233 208 38 0 chr6 11729100 11729153 -177550401 - MIR SINE MIR -147 115 61 217 213 33 0 chr6 11729314 11729375 -177550179 + (TA)n Simple_repeat Simple_repeat 1 63 0 758 182 6 3 chr6 11729968 11730300 -177549254 + CT-rich Low_complexity Low_complexity 1 333 0 251 241 9 103 chr6 11731787 11731903 -177547651 + MER5A DNA MER1_type 40 144 -45 209 184 0 0 chr6 11732150 11732188 -177547366 + L2 LINE L2 3219 3256 -16 2188 94 0 4 chr6 11732188 11732499 -177547055 - AluSx SINE Alu 0 318 9 2192 108 0 7 chr6 11732518 11732826 -177546728 - AluSx SINE Alu 0 312 2 194 348 11 11 chr6 11734115 11734207 -177545347 - L2 LINE L2 -411 2902 2811 452 261 84 28 chr6 11734421 11734563 -177544991 + L2 LINE L2 3163 3312 -1 246 220 40 0 chr6 11734640 11734690 -177544864 + MER2 DNA MER2_type 294 345 0 304 296 38 8 chr6 11735300 11735432 -177544122 + L1ME3A LINE L1 4877 5012 -1134 532 275 127 31 chr6 11735594 11736227 -177543327 + L1ME3A LINE L1 5217 5950 -214 2306 60 3 7 chr6 11736435 11736717 -177542837 + AluY SINE Alu 1 305 -32 207 0 0 0 chr6 11736717 11736740 -177542814 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2306 60 3 7 chr6 11736740 11736773 -177542781 + AluY SINE Alu 305 337 0 1123 110 0 7 chr6 11736775 11736956 -177542598 + AluSg/x SINE Alu 129 308 0 22 35 0 0 chr6 11737338 11737367 -177542187 + AT_rich Low_complexity Low_complexity 1 29 0 748 178 0 74 chr6 11737368 11737531 -177542023 - FRAM SINE Alu -26 150 1 2364 99 0 0 chr6 11738078 11738380 -177541174 - AluSx SINE Alu -10 302 1 24 0 0 0 chr6 11738444 11738468 -177541086 + AT_rich Low_complexity Low_complexity 1 24 0 1395 171 96 56 chr6 11739159 11739639 -177539915 + L1MC5 LINE L1 7046 7544 -417 1499 136 0 0 chr6 11739681 11739894 -177539660 - AluSg/x SINE Alu -15 295 83 27 29 0 0 chr6 11792237 11792271 -177487283 + AT_rich Low_complexity Low_complexity 1 34 0 275 217 96 48 chr6 11793538 11793621 -177485933 - L1MEd LINE L1 -5450 669 583 2570 56 0 40 chr6 11793984 11794308 -177485246 + AluY SINE Alu 1 311 0 423 268 178 5 chr6 11794457 11794670 -177484884 - MIR SINE MIR 0 262 13 185 232 89 0 chr6 11795220 11795276 -177484278 - L2 LINE L2 -6 3307 3247 182 367 50 0 chr6 11795435 11795555 -177483999 - L2 LINE L2 -222 3050 2925 603 203 115 14 chr6 11795686 11795834 -177483720 + Charlie8 DNA MER1_type 9 171 -2246 2374 97 0 0 chr6 11797623 11797934 -177481620 - AluY SINE Alu 0 311 1 192 40 0 0 chr6 11797934 11797959 -177481595 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2263 95 3 0 chr6 11797959 11798243 -177481311 - AluSq SINE Alu -27 286 2 2163 119 17 3 chr6 11799801 11800096 -177479458 + AluSq SINE Alu 1 299 -14 1979 146 6 25 chr6 11800619 11800934 -177478620 - AluSx SINE Alu -3 309 1 2547 78 0 3 chr6 11800997 11801304 -177478250 - AluSc SINE Alu -3 306 1 1855 148 20 10 chr6 11801925 11802228 -177477326 - AluJb SINE Alu -6 306 1 193 338 14 0 chr6 11802327 11802398 -177477156 - MIR SINE MIR -115 147 76 391 236 62 81 chr6 11804131 11804292 -177475262 + MIR3 SINE MIR 3 160 -48 2391 98 0 0 chr6 11804712 11805009 -177474545 + AluSg SINE Alu 1 297 -13 252 172 0 0 chr6 11806384 11806442 -177473112 + CT-rich Low_complexity Low_complexity 1 58 0 201 132 0 0 chr6 11806670 11806708 -177472846 + (AAATG)n Simple_repeat Simple_repeat 1 38 0 292 228 216 9 chr6 11806719 11806827 -177472727 + MIR SINE MIR 40 167 -58 2529 61 3 0 chr6 11807041 11807335 -177472219 + AluY SINE Alu 1 295 -16 210 314 23 0 chr6 11807911 11807997 -177471557 - MIR SINE MIR 0 262 175 216 280 173 40 chr6 11808071 11808221 -177471333 - MIR3 SINE MIR -9 199 30 23 54 0 0 chr6 11808888 11808925 -177470629 + AT_rich Low_complexity Low_complexity 1 37 0 1255 207 81 25 chr6 11811174 11811580 -177467974 + L1ME1 LINE L1 4833 5261 -885 2645 222 30 27 chr6 11811686 11812385 -177467169 + L1ME1 LINE L1 5448 6148 -18 1438 243 49 19 chr6 11812387 11812819 -177466735 + L1ME1 LINE L1 2146 2590 -3556 2183 228 65 37 chr6 11812847 11813358 -177466196 + L1ME1 LINE L1 5517 6051 -115 777 252 39 24 chr6 11813358 11813564 -177465990 + MER3 DNA MER1_type 1 209 0 2183 228 65 37 chr6 11813564 11813679 -177465875 + L1ME1 LINE L1 6051 6161 -5 1505 203 122 3 chr6 11814401 11814755 -177464799 - MSTD LTR MaLR 0 396 1 240 232 0 43 chr6 11815060 11815129 -177464425 + GA-rich Low_complexity Low_complexity 3 68 0 268 236 90 83 chr6 11815303 11815374 -177464180 - MER103 DNA DNA -19 147 78 2491 96 0 0 chr6 11815374 11815686 -177463868 + AluSx SINE Alu 1 312 0 268 236 90 83 chr6 11815686 11815758 -177463796 - MER103 DNA DNA -88 78 3 338 277 103 33 chr6 11816467 11816651 -177462903 - MIR SINE MIR -3 259 63 2383 92 0 10 chr6 11817116 11817430 -177462124 + AluSx SINE Alu 1 311 -1 188 258 16 16 chr6 11817694 11817756 -177461798 + L2 LINE L2 2790 2851 -463 730 306 86 40 chr6 11817996 11818515 -177461039 - L2 LINE L2 0 3313 2820 306 0 0 0 chr6 11818515 11818549 -177461005 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2060 98 4 0 chr6 11818559 11818825 -177460729 - AluSg SINE Alu -43 267 1 1454 188 16 46 chr6 11818828 11819131 -177460423 - AluJo SINE Alu -18 294 1 730 306 86 40 chr6 11819131 11819465 -177460089 - L2 LINE L2 -502 2811 2400 2289 94 17 0 chr6 11819725 11820138 -177459416 + AluSg SINE Alu 1 418 0 287 183 0 17 chr6 11821638 11821698 -177457856 - AluSq SINE Alu -6 294 236 4071 128 69 40 chr6 11821701 11823064 -177456490 - pTR5 LTR ERV1 0 2438 743 1624 88 66 0 chr6 11823064 11823290 -177456264 - AluSq SINE Alu -72 241 1 2362 104 0 19 chr6 11824155 11824464 -177455090 - AluSx SINE Alu -9 303 1 1126 257 139 47 chr6 11825179 11825875 -177453679 + L1MC4 LINE L1 7283 8042 0 466 271 106 37 chr6 11825912 11826130 -177453424 + MIR SINE MIR 20 252 -10 2303 113 0 0 chr6 11827426 11827726 -177451828 - AluSx SINE Alu -12 300 1 2356 101 0 0 chr6 11827999 11828297 -177451257 - AluSx SINE Alu -14 298 1 358 322 28 7 chr6 11829266 11829409 -177450145 + L2 LINE L2 3164 3309 -4 2231 103 0 17 chr6 11830002 11830337 -177449217 - AluSx SINE Alu 0 312 1 728 139 9 0 chr6 11830358 11830466 -177449088 - FRAM SINE Alu -37 139 31 24 0 0 29 chr6 11830508 11830520 -177449034 + AT_rich Low_complexity Low_complexity 1 12 -22 2158 110 3 3 chr6 11830520 11830811 -177448743 - AluSq SINE Alu -22 291 1 24 0 0 29 chr6 11830811 11830833 -177448721 + AT_rich Low_complexity Low_complexity 12 34 0 1887 162 87 0 chr6 11830842 11831187 -177448367 - L1MB2 LINE L1 -51 6120 5746 287 329 83 24 chr6 11831510 11831762 -177447792 + L2 LINE L2 2412 2678 -636 233 229 31 52 chr6 11833192 11833288 -177446266 + A-rich Low_complexity Low_complexity 2 95 0 4763 180 73 22 chr6 11833347 11835139 -177444415 - L1MB8 LINE L1 -229 5949 4067 938 285 106 65 chr6 11835131 11836094 -177443460 - L1MC4 LINE L1 -881 6910 5956 * 1428 254 50 48 chr6 11836102 11836626 -177442928 - L1MB8 LINE L1 -2019 4127 3603 250 241 23 46 chr6 11836609 11836696 -177442858 - L1MEc LINE L1 -2260 3955 3871 * 265 249 133 65 chr6 11836846 11837199 -177442355 - L1MEc LINE L1 -4143 2253 1877 257 340 0 0 chr6 11837336 11837442 -177442112 - L1MEc LINE L1 -4580 1816 1711 252 294 0 0 chr6 11837466 11837534 -177442020 - L1ME1 LINE L1 -53 6113 6046 1287 284 38 42 chr6 11837536 11838255 -177441299 - L1MEc LINE L1 -4671 1725 1010 2132 93 0 93 chr6 11838338 11838672 -177440882 - AluSq SINE Alu -10 303 1 807 84 0 0 chr6 11839531 11839638 -177439916 + AluSg/x SINE Alu 191 297 -13 1206 279 94 29 chr6 11840202 11840714 -177438840 - L1MC4 LINE L1 -2009 5782 5238 1256 297 89 40 chr6 11840731 11841903 -177437651 - L1MC4 LINE L1 -913 5216 3984 216 0 0 0 chr6 11841903 11841927 -177437627 + (CA)n Simple_repeat Simple_repeat 1 24 0 1256 297 89 40 chr6 11841927 11841947 -177437607 - L1MC4 LINE L1 -2145 3984 3966 303 286 49 70 chr6 11841961 11842146 -177437408 - L1MC4 LINE L1 -5416 703 523 220 211 0 0 chr6 11843050 11843102 -177436452 + A-rich Low_complexity Low_complexity 5 56 0 2134 104 16 0 chr6 11843354 11843661 -177435893 + AluSx SINE Alu 1 312 0 439 317 91 55 chr6 11843883 11844321 -177435233 + L1MEd LINE L1 12 465 -5654 254 242 32 38 chr6 11844346 11844473 -177435081 + L1 LINE L1 4933 5057 -1089 1958 101 9 75 chr6 11844577 11844895 -177434659 + AluSq SINE Alu 2 298 -15 484 128 26 26 chr6 11845155 11845272 -177434282 + GA-rich Low_complexity Low_complexity 1 117 0 413 280 103 71 chr6 11845284 11845366 -177434188 - LTR67 LTR ERVL -5 552 474 1644 155 54 4 chr6 11845366 11845643 -177433911 + AluJb SINE Alu 1 291 -21 413 280 103 71 chr6 11845643 11845985 -177433569 - LTR67 LTR ERVL -83 474 114 1586 107 61 61 chr6 11845998 11846259 -177433295 - AluSg SINE Alu -6 304 44 1189 182 129 53 chr6 11846485 11846552 -177433002 - MLT1B LTR MaLR -1 389 328 2426 82 0 7 chr6 11846552 11846856 -177432698 + AluSp SINE Alu 1 302 -11 1189 182 129 53 chr6 11846856 11847145 -177432409 - MLT1B LTR MaLR -62 328 6 424 218 23 68 chr6 11847170 11847303 -177432251 - MER5A DNA MER1_type -30 159 33 2319 97 3 7 chr6 11848553 11848861 -177430693 + AluSx SINE Alu 1 307 -5 374 236 16 55 chr6 11849118 11849245 -177430309 - MER94 DNA DNA -12 122 1 638 179 32 8 chr6 11850311 11850434 -177429120 - MIR SINE MIR -30 232 107 287 375 180 0 chr6 11850505 11850705 -177428849 - L2 LINE L2 -747 2567 2332 2198 121 10 0 chr6 11850756 11851063 -177428491 + AluSx SINE Alu 1 310 -2 459 141 0 0 chr6 11851068 11851146 -177428408 + (GAA)n Simple_repeat Simple_repeat 2 79 0 295 228 166 0 chr6 11851247 11851362 -177428192 - MIR SINE MIR -63 145 38 314 350 94 0 chr6 11851465 11851625 -177427929 + L2 LINE L2 2455 2629 -685 1912 166 67 52 chr6 11851864 11851913 -177427641 - MSTB1 LTR MaLR -1 431 384 2487 81 0 0 chr6 11851913 11852222 -177427332 - AluSc SINE Alu 0 309 1 1912 166 67 52 chr6 11852222 11852593 -177426961 - MSTB1 LTR MaLR -48 384 5 1504 141 120 86 chr6 11852598 11852813 -177426741 - MSTD LTR MaLR -1 395 160 1967 74 0 0 chr6 11852813 11853055 -177426499 + AluSx SINE Alu 56 297 -15 1504 141 120 86 chr6 11853055 11853221 -177426333 - MSTD LTR MaLR -236 160 1 316 302 137 88 chr6 11853227 11854024 -177425530 + L2 LINE L2 2141 2976 -338 207 291 191 33 chr6 11854540 11854750 -177424804 + L2 LINE L2 943 1185 -2129 1622 175 93 8 chr6 11858043 11858409 -177421145 - HsTC2 DNA Tc2 0 1900 1328 * 3844 157 45 5 chr6 11858407 11859055 -177420499 - HsTC2 DNA Tc2 -1224 674 1 21 82 0 0 chr6 11859633 11859682 -177419872 + AT_rich Low_complexity Low_complexity 1 49 0 224 367 76 0 chr6 11859700 11859779 -177419775 - L2 LINE L2 -38 3234 3150 216 237 62 82 chr6 11860869 11860966 -177418588 + MIR SINE MIR 164 258 -4 4824 177 27 21 chr6 11861015 11862608 -177416946 - L1MB7 LINE L1 -19 6165 4562 21 0 0 0 chr6 11862617 11862638 -177416916 + AT_rich Low_complexity Low_complexity 1 21 0 235 254 0 0 chr6 11863606 11863661 -177415893 - LTR67 LTR ERVL -490 67 13 189 0 0 0 chr6 11863668 11863689 -177415865 + (TTG)n Simple_repeat Simple_repeat 2 22 0 842 158 51 6 chr6 11864173 11864350 -177415204 + L1MA4 LINE L1 4695 4879 -1267 2948 134 15 11 chr6 11864353 11864829 -177414725 + L1MA4 LINE L1 5584 6061 -239 * 17975 148 30 32 chr6 11864823 11866093 -177413461 + L1M1 LINE L1 13 1284 -6281 303 29 0 0 chr6 11866093 11866128 -177413426 + THE1A LTR MaLR 1 35 -320 17975 148 30 32 chr6 11866128 11866143 -177413411 + L1M1 LINE L1 1284 1298 -6267 2161 120 45 58 chr6 11866143 11866502 -177413052 + THE1A LTR MaLR 2 355 0 17975 148 30 32 chr6 11866502 11867609 -177411945 + L1M1 LINE L1 1298 2405 -5160 2344 101 0 0 chr6 11867609 11867916 -177411638 + AluSg SINE Alu 1 307 -3 17975 148 30 32 chr6 11867916 11868317 -177411237 + L1M1 LINE L1 2405 2805 -4760 207 0 0 0 chr6 11868317 11868340 -177411214 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2242 101 0 24 chr6 11868345 11868643 -177410911 - AluSx SINE Alu -21 291 1 2277 88 0 53 chr6 11868643 11868961 -177410593 - AluSx SINE Alu -11 301 1 17975 148 30 32 chr6 11868961 11869171 -177410383 + L1M1 LINE L1 2807 3055 -4510 5895 112 27 26 chr6 11869161 11870089 -177409465 + L1MA3 LINE L1 5377 6305 0 * 1122 122 37 0 chr6 11870094 11870283 -177409271 + L1MA5 LINE L1 6103 6298 -2 804 159 8 0 chr6 11870904 11871030 -177408524 - FLAM_C SINE Alu -16 127 1 355 216 72 79 chr6 11871692 11871831 -177407723 + MER5B DNA MER1_type 24 161 -17 200 286 82 20 chr6 11873141 11873239 -177406315 - MIR SINE MIR -95 167 64 2486 131 3 29 chr6 11873340 11873715 -177405839 + MLT1A1 LTR MaLR 1 365 0 191 255 16 136 chr6 11874188 11874288 -177405266 + L2 LINE L2 2147 2217 -1097 2396 68 0 0 chr6 11874288 11874584 -177404970 - AluY SINE Alu -15 296 1 191 255 16 136 chr6 11874584 11874667 -177404887 + L2 LINE L2 2217 2308 -1006 197 83 28 0 chr6 11874676 11874712 -177404842 + (GA)n Simple_repeat Simple_repeat 1 37 0 621 238 92 5 chr6 11874999 11875184 -177404370 + MIR SINE MIR 56 256 -6 189 345 36 64 chr6 11875390 11875500 -177404054 + L2 LINE L2 3183 3289 -24 327 271 76 0 chr6 11875675 11875793 -177403761 + L1ME1 LINE L1 2614 2740 -3406 979 110 0 0 chr6 11875794 11875921 -177403633 + AluSq/x SINE Alu 9 135 -178 1968 125 48 0 chr6 11875921 11876210 -177403344 + AluSx SINE Alu 1 303 -9 693 204 43 48 chr6 11876210 11876440 -177403114 + L1ME1 LINE L1 2718 2946 -3200 2379 54 9 47 chr6 11876482 11876799 -177402755 + AluYa5 SINE Alu 1 305 -6 1352 84 0 0 chr6 11876799 11876977 -177402577 + AluSc SINE Alu 132 309 0 1399 247 88 15 chr6 11876987 11877510 -177402044 + L1ME1 LINE L1 3013 3573 -2573 462 235 84 0 chr6 11877517 11877636 -177401918 + MLT1E1 LTR MaLR 1 129 -464 2166 126 7 3 chr6 11877638 11877948 -177401606 + AluSx SINE Alu 1 311 -1 2360 102 0 6 chr6 11877970 11878285 -177401269 + AluSp SINE Alu 1 313 0 1773 200 209 3 chr6 11878292 11878762 -177400792 + MLT1E1 LTR MaLR 103 654 0 1418 234 79 62 chr6 11878774 11879057 -177400497 + L1ME1 LINE L1 3589 3866 -2280 2312 118 0 3 chr6 11879057 11879370 -177400184 + AluSx SINE Alu 1 312 0 1418 234 79 62 chr6 11879370 11879694 -177399860 + L1ME1 LINE L1 3866 4206 -1940 2215 96 0 7 chr6 11879697 11879989 -177399565 + AluSx SINE Alu 21 310 -2 1672 188 143 70 chr6 11880011 11880080 -177399474 + L1ME1 LINE L1 5127 5190 -976 2165 129 0 3 chr6 11880080 11880382 -177399172 + AluSx SINE Alu 1 301 -11 1672 188 143 70 chr6 11880382 11880839 -177398715 + L1ME1 LINE L1 5190 5734 -432 2124 90 0 74 chr6 11880839 11881151 -177398403 + AluSx SINE Alu 14 302 -10 1672 188 143 70 chr6 11881151 11881400 -177398154 + L1ME1 LINE L1 5734 5963 -203 2114 126 7 3 chr6 11881404 11881698 -177397856 + AluSx SINE Alu 1 295 -17 3214 123 21 12 chr6 11881739 11882250 -177397304 + MER50 LTR ERV1 1 516 -218 9858 190 30 57 chr6 11882256 11886621 -177392933 + MER50-int LTR ERV1 15 3918 -3173 1153 305 81 66 chr6 11886632 11888152 -177391402 + MER50-int LTR ERV1 4526 6206 -885 260 308 135 19 chr6 11888313 11888469 -177391085 + MER50-int LTR ERV1 6158 6331 -1926 8085 118 3 2 chr6 11889342 11890506 -177389048 + MER50-int LTR ERV1 3880 7197 -8 4034 164 40 8 chr6 11890507 11891212 -177388342 + MER50 LTR ERV1 1 727 -7 842 210 51 5 chr6 11891204 11891492 -177388062 + MER93b LTR ERV1 40 373 0 * 2655 113 49 58 chr6 11891718 11891919 -177387635 + LTR26B LTR ERV1 1 202 -329 2072 104 7 3 chr6 11891919 11892217 -177387337 + AluSg SINE Alu 1 299 -11 2655 113 49 58 chr6 11892217 11892501 -177387053 + LTR26B LTR ERV1 202 482 -49 218 279 33 0 chr6 11892604 11892665 -177386889 - MIR SINE MIR -139 123 61 1299 261 94 39 chr6 11892715 11893429 -177386125 + HAL1 LINE L1 1045 1797 -710 2205 106 0 0 chr6 11893597 11893908 -177385646 + AluY SINE Alu 1 311 0 740 207 53 24 chr6 11894324 11894484 -177385070 - L2 LINE L2 0 3313 3146 2205 86 0 0 chr6 11894484 11894774 -177384780 + AluSc SINE Alu 1 290 -19 303 322 66 0 chr6 11894786 11894907 -177384647 - L2 LINE L2 -1034 2280 2152 388 327 89 60 chr6 11895121 11895224 -177384330 - L2 LINE L2 -1201 2113 2014 1973 135 3 3 chr6 11895224 11895528 -177384026 + AluSq SINE Alu 1 304 -9 388 327 89 60 chr6 11895528 11895739 -177383815 - L2 LINE L2 -1300 2014 1790 201 264 0 56 chr6 11895828 11895900 -177383654 + L2 LINE L2 3245 3312 -1 1522 140 92 54 chr6 11896187 11896272 -177383282 + MLT1B LTR MaLR 1 81 -309 1883 129 0 39 chr6 11896272 11896583 -177382971 - AluSq SINE Alu -14 299 1 1522 140 92 54 chr6 11896583 11896812 -177382742 + MLT1B LTR MaLR 81 327 -63 1050 84 7 7 chr6 11896818 11896961 -177382593 + AluSp SINE Alu 1 143 -170 2097 100 30 0 chr6 11896966 11897265 -177382289 + AluSp SINE Alu 1 308 -5 432 96 27 41 chr6 11897274 11897347 -177382207 + MLT1B LTR MaLR 317 388 -2 1624 138 28 16 chr6 11897574 11897828 -177381726 + MER1B DNA MER1_type 83 339 0 201 288 0 30 chr6 11898293 11898305 -177381249 + (CATA)n Simple_repeat Simple_repeat 4 15 -52 2041 104 0 36 chr6 11898305 11898614 -177380940 + AluSq SINE Alu 1 298 -15 201 288 0 30 chr6 11898614 11898667 -177380887 + (CATA)n Simple_repeat Simple_repeat 15 67 0 24 103 0 0 chr6 11899724 11899811 -177379743 + GC_rich Low_complexity Low_complexity 1 87 0 2253 91 10 0 chr6 11901336 11901645 -177377909 + AluSx SINE Alu 1 312 0 911 276 131 8 chr6 11901693 11902051 -177377503 - L2 LINE L2 -2 3311 2910 550 220 15 23 chr6 11902069 11902201 -177377353 + MER5B DNA MER1_type 1 131 -47 2020 117 24 0 chr6 11902241 11902532 -177377022 + AluSx SINE Alu 1 298 -14 1455 147 13 0 chr6 11902702 11902927 -177376627 - AluJb SINE Alu -79 233 6 217 321 71 65 chr6 11902927 11902992 -177376562 + MER5B DNA MER1_type 4 67 -111 2007 120 0 10 chr6 11902992 11903292 -177376262 + AluSx SINE Alu 1 297 -15 217 321 71 65 chr6 11903292 11903394 -177376160 + MER5B DNA MER1_type 67 172 -6 249 83 0 0 chr6 11903471 11903507 -177376047 + (TA)n Simple_repeat Simple_repeat 2 37 0 2080 159 14 44 chr6 11903514 11903720 -177375834 - MLT1A1 LTR MaLR -12 353 161 1845 157 3 6 chr6 11903720 11904032 -177375522 - AluJb SINE Alu -1 311 1 2080 159 14 44 chr6 11904032 11904189 -177375365 - MLT1A1 LTR MaLR -204 161 1 2604 48 0 0 chr6 11904336 11904647 -177374907 + AluY SINE Alu 1 311 0 3660 162 15 126 chr6 11905375 11906903 -177372651 - pTR5 LTR ERV1 0 2606 1524 424 269 100 19 chr6 11906903 11907063 -177372491 - MER112 DNA MER1_type -22 238 66 2135 107 0 3 chr6 11907196 11907494 -177372060 - AluSx SINE Alu -14 298 2 372 301 132 36 chr6 11907812 11907926 -177371628 + MIR SINE MIR 11 113 -149 2500 140 0 65 chr6 11907926 11908140 -177371414 + Tigger2a DNA MER2_type 1 170 -2538 2184 106 0 6 chr6 11908140 11908451 -177371103 - AluSg SINE Alu 0 310 2 2500 140 0 65 chr6 11908451 11908700 -177370854 + Tigger2a DNA MER2_type 170 434 0 372 301 132 36 chr6 11908700 11908804 -177370750 + MIR SINE MIR 113 250 -12 2001 119 14 3 chr6 11908834 11909127 -177370427 - AluSx SINE Alu -16 296 1 1059 316 17 44 chr6 11909193 11909598 -177369956 - MLT2F LTR ERVL -7 656 263 1826 183 83 39 chr6 11909598 11910029 -177369525 - MLT1C LTR MaLR 0 467 18 607 276 124 18 chr6 11910067 11910292 -177369262 - MLT2F LTR ERVL -414 249 1 2072 102 10 3 chr6 11910559 11910853 -177368701 + AluSq SINE Alu 1 296 -17 296 184 197 7 chr6 11911356 11911503 -177368051 - Charlie7 DNA MER1_type -41 2571 2397 658 118 0 36 chr6 11911566 11911676 -177367878 - MLT2D LTR ERVL -308 106 1 555 264 171 10 chr6 11912064 11912210 -177367344 + MER5C DNA MER1_type 1 187 -137 225 65 0 0 chr6 11912210 11912241 -177367313 + (CAT)n Simple_repeat Simple_repeat 2 32 0 555 264 171 10 chr6 11912241 11912287 -177367267 + MER5C DNA MER1_type 187 224 -100 804 295 28 8 chr6 11912556 11912810 -177366744 + MER46C DNA MER2_type 80 338 0 2278 95 0 0 chr6 11915504 11915808 -177363746 - AluSc SINE Alu -5 304 1 1820 151 0 22 chr6 11916382 11916694 -177362860 - AluJo SINE Alu -7 305 1 466 323 44 40 chr6 11917213 11917464 -177362090 + MIR SINE MIR 2 253 -9 973 212 102 29 chr6 11917789 11918063 -177361491 - MER58B DNA MER1_type -3 338 45 222 327 140 0 chr6 11918229 11918379 -177361175 - L2 LINE L2 0 3272 3102 318 281 39 98 chr6 11918848 11919051 -177360503 + MIR3 SINE MIR 3 193 -15 1543 263 60 21 chr6 11919639 11920170 -177359384 + L2 LINE L2 2718 3287 -26 274 224 22 30 chr6 11920276 11920410 -177359144 + (TAA)n Simple_repeat Simple_repeat 1 133 0 290 279 150 7 chr6 11920410 11920550 -177359004 - MIR SINE MIR 0 262 103 2112 111 16 3 chr6 11920560 11920866 -177358688 + AluSq SINE Alu 1 310 -3 209 267 0 0 chr6 11922385 11922430 -177357124 + GA-rich Low_complexity Low_complexity 6 50 0 789 229 78 0 chr6 11925106 11925272 -177354282 - MIR SINE MIR -73 189 11 228 86 0 0 chr6 11926754 11926789 -177352765 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 2125 113 3 0 chr6 11927022 11927323 -177352231 - AluSx SINE Alu -10 302 1 533 261 135 37 chr6 11928030 11928245 -177351309 + MIR SINE MIR 21 256 -6 354 290 183 21 chr6 11928598 11928784 -177350770 + MIR SINE MIR 46 261 -1 22 0 0 0 chr6 11929749 11929771 -177349783 + AT_rich Low_complexity Low_complexity 1 22 0 2294 56 7 0 chr6 11929771 11930088 -177349466 + AluY SINE Alu 1 319 0 192 244 44 0 chr6 11932269 11932314 -177347240 - MIR SINE MIR -107 155 109 967 141 17 108 chr6 11932397 11932638 -177346916 - MER20 DNA MER1_type 0 219 1 239 189 151 0 chr6 11934025 11934078 -177345476 + MIR3 SINE MIR 134 194 -14 2166 112 3 3 chr6 11934159 11934471 -177345083 - AluSx SINE Alu 0 312 1 229 342 79 26 chr6 11936927 11937041 -177342513 - L2 LINE L2 0 3272 3153 259 305 140 50 chr6 11937403 11937724 -177341830 - L2 LINE L2 -1005 2309 1960 538 292 37 6 chr6 11937841 11938002 -177341552 + MIR3 SINE MIR 31 196 -12 196 253 13 67 chr6 11938841 11938916 -177340638 - MIR SINE MIR -73 135 77 330 196 152 54 chr6 11939083 11939195 -177340359 + MIR3 SINE MIR 54 176 -32 236 293 207 12 chr6 11943036 11943200 -177336354 - L2 LINE L2 0 3313 3118 356 160 27 0 chr6 11944779 11944854 -177334700 + CT-rich Low_complexity Low_complexity 4 80 0 422 292 16 52 chr6 11945249 11945441 -177334113 - MER5A DNA MER1_type -4 185 1 551 256 87 19 chr6 11945784 11945996 -177333558 + MIR SINE MIR 17 244 -18 259 258 0 15 chr6 11946261 11946327 -177333227 - ORSL DNA AcHobo 0 275 211 2062 137 0 0 chr6 11947377 11947676 -177331878 - AluSx SINE Alu -13 299 1 254 356 35 0 chr6 11947704 11947819 -177331735 + L2 LINE L2 2933 3051 -221 255 152 0 0 chr6 11948188 11948234 -177331320 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr6 11949086 11949108 -177330446 + AT_rich Low_complexity Low_complexity 1 22 0 2444 91 0 0 chr6 11949137 11949435 -177330119 - AluSq SINE Alu -15 298 1 2043 148 0 3 chr6 11949644 11949942 -177329612 + AluSq SINE Alu 1 297 -16 248 277 23 59 chr6 11950300 11950459 -177329095 - MIR SINE MIR -72 136 34 2361 113 0 0 chr6 11950822 11951132 -177328422 - AluSg SINE Alu 0 310 1 200 289 79 0 chr6 11951438 11951514 -177328040 + MIR3 SINE MIR 119 200 -8 1373 124 14 5 chr6 11951559 11951769 -177327785 + MLT2D LTR ERVL 106 317 -97 216 216 0 0 chr6 11951816 11951867 -177327687 + (CA)n Simple_repeat Simple_repeat 2 52 0 621 331 57 38 chr6 11952125 11952545 -177327009 + MLT1K LTR MaLR 157 584 -4 206 275 58 58 chr6 11952546 11952666 -177326888 + L2 LINE L2 3185 3304 -9 1039 163 9 14 chr6 11954989 11955204 -177324350 - L1MB7 LINE L1 -16 6168 5955 186 133 0 0 chr6 11955776 11955806 -177323748 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 1059 201 5 0 chr6 11956589 11956783 -177322771 + MLT2D LTR ERVL 3 197 -217 1299 230 193 26 chr6 11956800 11957230 -177322324 - MLT1J LTR MaLR -9 502 1 23 0 0 0 chr6 11960394 11960417 -177319137 + AT_rich Low_complexity Low_complexity 1 23 0 710 133 11 116 chr6 11961542 11961673 -177317881 - MER53 DNA DNA -7 182 74 2152 123 27 0 chr6 11961673 11961966 -177317588 - AluSg SINE Alu -9 301 1 710 133 11 116 chr6 11961966 11962015 -177317539 - MER53 DNA DNA -115 74 21 786 120 8 0 chr6 11962041 11962158 -177317396 - L1PB1 LINE L1 -3 6148 6031 383 338 35 65 chr6 11963077 11963474 -177316080 - L2 LINE L2 -337 2977 2593 1692 127 113 11 chr6 11964044 11964319 -177315235 - AluJb SINE Alu -9 303 1 1229 199 0 0 chr6 11964707 11964918 -177314636 - MER20 DNA MER1_type 0 219 9 324 0 0 0 chr6 11965331 11965367 -177314187 + (TG)n Simple_repeat Simple_repeat 1 36 0 273 29 0 0 chr6 11967491 11967525 -177312029 + (CA)n Simple_repeat Simple_repeat 2 35 0 501 296 50 10 chr6 11967875 11968074 -177311480 + MIR SINE MIR 2 208 -54 306 169 0 0 chr6 11968412 11968477 -177311077 + (TG)n Simple_repeat Simple_repeat 2 66 0 214 290 86 74 chr6 11968774 11968936 -177310618 - MIR SINE MIR -50 212 49 430 307 16 0 chr6 11971484 11971611 -177307943 + MIR SINE MIR 41 169 -93 1625 224 88 100 chr6 11971944 11972421 -177307133 + HAL1b LINE L1 443 905 -443 829 158 0 8 chr6 11972421 11972554 -177307000 - FLAM_C SINE Alu -1 132 1 1625 224 88 100 chr6 11972554 11972963 -177306591 + HAL1b LINE L1 905 1318 -30 2535 173 10 10 chr6 11973272 11973751 -177305803 + L1PB4 LINE L1 5677 6155 -1 885 149 28 145 chr6 11973768 11974016 -177305538 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chr6 11974153 11974175 -177305379 + AT_rich Low_complexity Low_complexity 1 22 0 1782 149 10 14 chr6 11975590 11975886 -177303668 - AluJb SINE Alu -17 295 1 2330 79 0 0 chr6 11976001 11976281 -177303273 + AluSq SINE Alu 1 280 -33 381 22 0 0 chr6 11976281 11976327 -177303227 + (CA)n Simple_repeat Simple_repeat 1 46 0 261 0 0 0 chr6 11977367 11977396 -177302158 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2019 127 13 7 chr6 11977401 11977700 -177301854 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr6 11977923 11977945 -177301609 + AT_rich Low_complexity Low_complexity 1 22 0 234 278 106 40 chr6 11978334 11978485 -177301069 - L2 LINE L2 -143 3129 2969 1590 176 17 27 chr6 11978591 11978892 -177300662 - AluJo SINE Alu -14 298 1 4214 150 24 65 chr6 11982200 11983092 -177296462 + L1MA8 LINE L1 5431 6285 -6 228 182 0 0 chr6 11983092 11983136 -177296418 + (CATA)n Simple_repeat Simple_repeat 3 46 0 381 216 0 0 chr6 11983887 11983975 -177295579 + (TG)n Simple_repeat Simple_repeat 1 88 0 211 209 0 0 chr6 11983998 11984041 -177295513 + L2 LINE L2 3179 3221 -92 252 0 0 0 chr6 11984498 11984526 -177295028 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 330 344 53 21 chr6 11985448 11985637 -177293917 + LTR33 LTR ERVL 23 217 -304 338 303 298 0 chr6 11985855 11986033 -177293521 - MIR SINE MIR -19 243 13 333 233 126 0 chr6 11986231 11986334 -177293220 + MER5B DNA MER1_type 1 116 -62 966 209 24 0 chr6 11987555 11987766 -177291788 - MER20 DNA MER1_type 0 219 4 401 283 178 12 chr6 11988048 11988295 -177291259 + LTR33 LTR ERVL 5 292 -229 852 271 142 57 chr6 11988711 11989076 -177290478 + MLT1L LTR MaLR 1 334 -281 922 128 0 0 chr6 11989076 11989209 -177290345 - FLAM_C SINE Alu 0 133 1 852 271 142 57 chr6 11989209 11989293 -177290261 + MLT1L LTR MaLR 334 409 -206 1755 153 50 17 chr6 11989293 11989594 -177289960 - AluSx SINE Alu -1 311 1 852 271 142 57 chr6 11989594 11989686 -177289868 + MLT1L LTR MaLR 409 589 -26 1482 308 136 12 chr6 11989792 11990951 -177288603 + L2 LINE L2 1978 3282 -31 201 39 0 0 chr6 11990969 11990995 -177288559 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 211 235 0 44 chr6 11991092 11991160 -177288394 + L2 LINE L2 2152 2216 -1098 2280 80 0 52 chr6 11991823 11992149 -177287405 + AluY SINE Alu 1 309 -2 38 0 0 0 chr6 11992332 11992370 -177287184 + AT_rich Low_complexity Low_complexity 1 38 0 655 272 58 5 chr6 11992393 11992617 -177286937 - MIR SINE MIR -4 258 23 3765 211 43 35 chr6 11992854 11994514 -177285040 + L1ME1 LINE L1 4448 6121 -45 339 164 15 0 chr6 11994625 11994692 -177284862 + L1MA10 LINE L1 6266 6333 -1 1916 145 0 3 chr6 11994700 11995002 -177284552 + AluSx SINE Alu 1 301 0 234 0 0 0 chr6 11995080 11995106 -177284448 + (CA)n Simple_repeat Simple_repeat 1 26 0 2209 92 4 0 chr6 11996996 11997306 -177282248 - AluY SINE Alu 0 311 1 335 321 9 0 chr6 11998422 11998528 -177281026 + MLT1J1 LTR MaLR 66 172 -274 2658 49 0 0 chr6 11998823 11999129 -177280425 - AluY SINE Alu -5 306 1 439 269 39 51 chr6 12000461 12000617 -177278937 + MER5A DNA MER1_type 35 188 -1 431 310 105 35 chr6 12000689 12000918 -177278636 - MIR SINE MIR -6 256 12 5658 149 29 30 chr6 12001031 12001555 -177277999 - L1MA9 LINE L1 -6 6306 5783 309 89 0 0 chr6 12001555 12001600 -177277954 + (TG)n Simple_repeat Simple_repeat 2 46 0 5658 149 29 30 chr6 12001600 12001834 -177277720 - L1MA9 LINE L1 -529 5783 5550 2315 133 117 5 chr6 12001834 12002219 -177277335 + MSTA LTR MaLR 1 428 0 5658 149 29 30 chr6 12002219 12002360 -177277194 - L1MA9 LINE L1 -762 5550 5410 2734 101 0 3 chr6 12002360 12002725 -177276829 + THE1B LTR MaLR 1 364 0 5658 149 29 30 chr6 12002725 12002929 -177276625 - L1MA9 LINE L1 -902 5410 5203 790 272 81 0 chr6 12003130 12003402 -177276152 + LTR16A LTR ERVL 152 445 -5 2372 121 32 8 chr6 12003455 12003828 -177275726 + MLT1B LTR MaLR 1 382 -8 683 35 0 61 chr6 12004162 12004277 -177275277 + (TTCC)n Simple_repeat Simple_repeat 1 108 0 2224 130 0 0 chr6 12004277 12004584 -177274970 - AluSx SINE Alu -5 307 1 212 171 0 0 chr6 12004679 12004720 -177274834 + T-rich Low_complexity Low_complexity 1 41 0 830 213 60 47 chr6 12005246 12005452 -177274102 - MIR SINE MIR -18 244 33 2165 142 0 0 chr6 12005452 12005763 -177273791 - AluSx SINE Alu -1 311 1 830 213 60 47 chr6 12005763 12005791 -177273763 - MIR SINE MIR -229 33 7 198 118 0 0 chr6 12005837 12005871 -177273683 + (TG)n Simple_repeat Simple_repeat 1 34 0 7400 91 17 10 chr6 12006427 12012519 -177267035 + L1PA6 LINE L1 11 6149 -5 262 350 105 8 chr6 12012789 12012951 -177266603 - MIR SINE MIR -55 207 32 265 307 114 9 chr6 12015268 12015382 -177264172 - L1ME2 LINE L1 -48 6116 5991 1602 300 96 21 chr6 12015397 12015917 -177263637 + MER115 DNA AcHobo 3 579 -114 2684 49 0 0 chr6 12015917 12016224 -177263330 - AluY SINE Alu -4 307 1 1602 300 96 21 chr6 12016224 12016330 -177263224 + MER115 DNA AcHobo 579 676 -17 939 264 24 10 chr6 12016657 12016945 -177262609 - L1ME2 LINE L1 -202 5968 5677 402 203 136 0 chr6 12017009 12017123 -177262431 - FLAM_A SINE Alu -26 107 3 370 270 112 4 chr6 12017124 12017263 -177262291 - L1ME2 LINE L1 -577 5585 5434 442 350 28 9 chr6 12017843 12018166 -177261388 + L2 LINE L2 980 1308 -2006 220 374 14 43 chr6 12018314 12018592 -177260962 + L2 LINE L2 1332 1601 -1713 1307 183 109 29 chr6 12018716 12019066 -177260488 + MLT1B LTR MaLR 7 384 -6 358 325 12 25 chr6 12019077 12019237 -177260317 + MIR SINE MIR 70 227 -35 364 106 0 0 chr6 12019237 12019281 -177260273 - MLT1B LTR MaLR 0 390 347 331 93 0 0 chr6 12019281 12019324 -177260230 + Alu SINE Alu 1 43 -260 247 368 110 16 chr6 12019981 12020163 -177259391 + L2 LINE L2 2550 2748 -566 414 198 267 32 chr6 12020171 12020234 -177259320 + L1MC5 LINE L1 7629 7676 -285 217 0 61 0 chr6 12020234 12020267 -177259287 + (TA)n Simple_repeat Simple_repeat 2 36 0 414 198 267 32 chr6 12020267 12020420 -177259134 + L1MC5 LINE L1 7676 7896 -65 225 350 10 20 chr6 12020476 12020576 -177258978 + L2 LINE L2 2736 2834 -480 765 171 17 0 chr6 12020652 12020827 -177258727 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 905 164 6 9 chr6 12020839 12021181 -177258373 + (TGGA)n Simple_repeat Simple_repeat 1 341 0 295 331 93 0 chr6 12021181 12021332 -177258222 + MIR3 SINE MIR 7 171 -37 21 82 0 0 chr6 12021377 12021426 -177258128 + AT_rich Low_complexity Low_complexity 1 49 0 187 289 0 0 chr6 12021433 12021485 -177258069 + L3 LINE CR1 1524 1575 -2 22 0 0 0 chr6 12021554 12021576 -177257978 + AT_rich Low_complexity Low_complexity 1 22 0 234 200 18 55 chr6 12021816 12021871 -177257683 + L2 LINE L2 3214 3266 -6 289 295 164 16 chr6 12022300 12022422 -177257132 + MIR3 SINE MIR 16 155 -53 309 347 68 37 chr6 12024205 12024663 -177254891 - L2 LINE L2 -647 2667 2196 2046 103 59 7 chr6 12024706 12024996 -177254558 + AluSx SINE Alu 1 305 -7 302 282 149 11 chr6 12025106 12025280 -177254274 - L2 LINE L2 -1371 1943 1746 1755 229 31 74 chr6 12025331 12025873 -177253681 + MLT2B1 LTR ERVL 2 520 0 232 296 0 0 chr6 12025883 12025937 -177253617 + polypurine Low_complexity Low_complexity 1 54 0 482 233 2 15 chr6 12026883 12027339 -177252215 + (CA)n Simple_repeat Simple_repeat 1 450 0 183 229 0 0 chr6 12027387 12027448 -177252106 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr6 12027791 12027812 -177251742 + AT_rich Low_complexity Low_complexity 1 21 0 562 294 51 29 chr6 12028031 12028455 -177251099 + L1ME4a LINE L1 5575 6008 -113 692 190 10 0 chr6 12028602 12028800 -177250754 + GA-rich Low_complexity Low_complexity 1 200 0 3210 79 17 0 chr6 12029484 12029904 -177249650 + L1PA8 LINE L1 5745 6171 -1 283 303 38 30 chr6 12030296 12030428 -177249126 + MER5A DNA MER1_type 57 189 0 243 226 165 0 chr6 12030443 12030510 -177249044 + MIR SINE MIR 31 106 -102 958 217 33 19 chr6 12031016 12031228 -177248326 + MER20 DNA MER1_type 5 219 0 4556 179 58 48 chr6 12032012 12032629 -177246925 + MER45B DNA AcHobo 1 633 -948 2325 100 3 0 chr6 12032629 12032928 -177246626 + AluSx SINE Alu 1 300 -12 4556 179 58 48 chr6 12032928 12033313 -177246241 + MER45B DNA AcHobo 633 1013 -27 2250 115 0 6 chr6 12033418 12033730 -177245824 + AluSx SINE Alu 1 310 -2 356 320 0 0 chr6 12034561 12034664 -177244890 + MER94 DNA DNA 1 103 -31 215 270 108 0 chr6 12034716 12034790 -177244764 + MIR3 SINE MIR 96 177 -31 1063 158 0 50 chr6 12037258 12037460 -177242094 + MER20 DNA MER1_type 28 219 0 836 257 5 10 chr6 12037513 12037719 -177241835 + MER3 DNA MER1_type 3 207 -2 449 108 0 14 chr6 12040583 12040657 -177238897 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 257 203 70 112 chr6 12041740 12041927 -177237627 + L1ME4a LINE L1 5943 6121 0 9548 100 9 2 chr6 12042126 12043403 -177236151 + HSMAR1 DNA Mariner 1 1287 0 3302 143 22 13 chr6 12043790 12044341 -177235213 - Tigger3b DNA MER2_type -1 1230 675 2831 179 44 19 chr6 12044328 12044494 -177235060 - Tigger3b DNA MER2_type -2472 556 396 * 2232 113 3 0 chr6 12044494 12044795 -177234759 + AluSg SINE Alu 1 302 -8 2831 179 44 19 chr6 12044795 12045170 -177234384 - Tigger3b DNA MER2_type -2632 396 1 204 278 89 33 chr6 12045190 12045280 -177234274 + L2 LINE L2 3203 3297 -16 2596 150 37 22 chr6 12045580 12046039 -177233515 + MLT1C LTR MaLR 1 466 -1 2449 91 0 0 chr6 12046197 12046494 -177233060 + AluSc SINE Alu 1 297 -12 230 108 27 0 chr6 12046810 12046847 -177232707 - L1P4 LINE L1 -330 5833 5796 435 274 65 20 chr6 12047996 12048149 -177231405 - MIR SINE MIR -30 232 73 729 280 100 12 chr6 12048282 12048621 -177230933 + L2 LINE L2 2608 2976 -338 348 284 50 55 chr6 12048667 12048885 -177230669 + L1MEc LINE L1 204 420 -6143 761 197 28 0 chr6 12049136 12049278 -177230276 - MER3 DNA MER1_type -63 146 1 1711 283 73 41 chr6 12049280 12050326 -177229228 + L1MEc LINE L1 755 1833 -4551 867 262 110 14 chr6 12050295 12050658 -177228896 + L1ME2 LINE L1 5989 6386 -14 * 2236 108 0 3 chr6 12050703 12050998 -177228556 + AluSg SINE Alu 1 294 -16 591 236 187 9 chr6 12051000 12051225 -177228329 + L2 LINE L2 3030 3294 -19 234 105 0 0 chr6 12051229 12051267 -177228287 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 604 256 137 26 chr6 12053548 12053782 -177225772 + L2 LINE L2 3053 3312 -1 282 224 45 0 chr6 12054772 12054839 -177224715 + MIR SINE MIR 84 153 -109 10182 155 9 1 chr6 12054848 12057491 -177222063 + L1PA13 LINE L1 3501 6159 -4 247 288 81 9 chr6 12058138 12058249 -177221305 - L3 LINE CR1 -1 1576 1458 241 192 154 58 chr6 12058232 12058336 -177221218 - L2 LINE L2 -21 3251 3138 * 507 179 97 28 chr6 12058479 12058624 -177220930 - L1MA9 LINE L1 -9 6303 6149 836 262 73 66 chr6 12058984 12059462 -177220092 + MER39 LTR ERV1 67 707 0 356 309 78 11 chr6 12060109 12060300 -177219254 + MIR SINE MIR 2 205 -57 246 253 178 27 chr6 12060391 12060537 -177219017 + MIR SINE MIR 84 251 -11 1585 215 54 39 chr6 12060742 12061202 -177218352 + MLT1C LTR MaLR 1 467 0 675 303 131 25 chr6 12062161 12062481 -177217073 + MLT1K LTR MaLR 3 356 -232 231 154 0 0 chr6 12062584 12062623 -177216931 + MLT1K LTR MaLR 550 588 0 24 0 0 0 chr6 12062899 12062923 -177216631 + AT_rich Low_complexity Low_complexity 1 24 0 450 266 9 0 chr6 12063033 12063142 -177216412 - MER81 DNA DNA 0 114 5 2501 52 0 10 chr6 12063271 12063576 -177215978 - AluY SINE Alu -9 302 1 318 273 56 35 chr6 12063802 12063945 -177215609 - MER5B DNA MER1_type 0 178 33 580 168 104 0 chr6 12064065 12064190 -177215364 - MER5A DNA MER1_type -7 182 45 2422 53 16 10 chr6 12065525 12065829 -177213725 + AluSc SINE Alu 1 306 -3 2530 110 78 8 chr6 12067966 12068366 -177211188 + MSTA LTR MaLR 1 428 0 2008 126 126 48 chr6 12068816 12069213 -177210341 - MSTA LTR MaLR 0 428 1 1443 213 62 15 chr6 12069568 12069906 -177209648 + MLT1A1 LTR MaLR 1 354 -11 217 268 37 24 chr6 12071406 12071488 -177208066 - MIR SINE MIR -21 241 159 2904 161 72 0 chr6 12071491 12072007 -177207547 + MER68 LTR ERV1 4 556 -6 649 245 7 0 chr6 12072020 12072167 -177207387 - MIR SINE MIR -103 159 12 2056 119 7 10 chr6 12073263 12073557 -177205997 + AluSx SINE Alu 1 293 -19 1832 126 53 0 chr6 12073559 12073821 -177205733 + AluSg SINE Alu 1 276 -34 824 141 23 6 chr6 12073842 12074019 -177205535 + GA-rich Low_complexity Low_complexity 1 180 0 268 325 25 67 chr6 12074293 12074455 -177205099 + MIR SINE MIR 37 191 -61 609 221 62 112 chr6 12076422 12076680 -177202874 - MIR SINE MIR -5 257 13 253 278 56 16 chr6 12077320 12077446 -177202108 - L1MC/D LINE L1 -1954 5854 5724 251 318 106 18 chr6 12078260 12078647 -177200907 - L2 LINE L2 0 3313 2884 2612 177 13 0 chr6 12078656 12079124 -177200430 - L1MC1 LINE L1 -1 6332 5859 6599 92 11 19 chr6 12079407 12080363 -177199191 - L1MA2 LINE L1 -11 6293 5345 21 0 0 0 chr6 12080700 12080721 -177198833 + AT_rich Low_complexity Low_complexity 1 21 0 408 193 0 105 chr6 12081094 12081208 -177198346 + L2 LINE L2 3196 3297 -16 2066 166 26 45 chr6 12081247 12081600 -177197954 + MLT2D LTR ERVL 1 346 -68 207 0 0 0 chr6 12081600 12081623 -177197931 + (TC)n Simple_repeat Simple_repeat 2 24 0 2066 166 26 45 chr6 12081623 12081691 -177197863 + MLT2D LTR ERVL 346 414 0 1059 145 0 6 chr6 12132272 12132431 -177147123 - MSTA LTR MaLR -269 159 2 3341 261 36 24 chr6 12132431 12134632 -177144922 - L1MEc LINE L1 -2957 3258 991 1078 286 23 9 chr6 12134678 12135021 -177144533 - L1MEc LINE L1 -6013 383 36 420 238 90 8 chr6 12135106 12135228 -177144326 + L1MEd LINE L1 988 1119 -5000 435 333 32 9 chr6 12135279 12135562 -177143992 - L1MEc LINE L1 -4539 2001 1708 554 255 21 35 chr6 12135698 12135831 -177143723 + MER45 DNA AcHobo 1 109 -69 310 91 0 0 chr6 12135831 12135875 -177143679 - L1MB2 LINE L1 -2 6169 6126 2232 168 25 27 chr6 12135876 12136282 -177143272 - MSTB1 LTR MaLR -12 420 16 1827 155 36 3 chr6 12136300 12136635 -177142919 - L1MB2 LINE L1 -51 6120 5775 309 234 16 0 chr6 12136657 12136721 -177142833 + MER45 DNA AcHobo 1517 1581 0 1883 178 18 0 chr6 12137472 12137810 -177141744 + MER2 DNA MER2_type 1 344 0 327 177 247 19 chr6 12138316 12138474 -177141080 + Charlie5 DNA MER1_type 2371 2564 -48 326 138 43 128 chr6 12138566 12138660 -177140894 + Charlie5 DNA MER1_type 2500 2585 -27 1677 133 72 17 chr6 12138937 12139230 -177140324 - AluSq SINE Alu -4 309 1 27237 77 10 7 chr6 12139634 12145771 -177133783 + L1PA6 LINE L1 11 6149 -5 499 325 52 33 chr6 12146895 12147107 -177132447 + LTR16C LTR ERVL 66 281 -210 405 0 0 0 chr6 12147189 12147234 -177132320 + (ATG)n Simple_repeat Simple_repeat 2 46 0 887 186 124 10 chr6 12147250 12147443 -177132111 + LTR16C LTR ERVL 275 489 -2 644 184 9 25 chr6 12147450 12147771 -177131783 + (TCTA)n Simple_repeat Simple_repeat 1 315 0 608 291 23 17 chr6 12148340 12148515 -177131039 + MIR SINE MIR 36 211 -51 186 43 0 0 chr6 12148621 12148644 -177130910 + (CA)n Simple_repeat Simple_repeat 2 24 0 2363 77 7 3 chr6 12149944 12150242 -177129312 + AluY SINE Alu 1 299 -12 3130 137 17 2 chr6 12150862 12151337 -177128217 - L1MB2 LINE L1 -1 6170 5689 417 285 69 21 chr6 12151729 12151873 -177127681 - MIR SINE MIR -106 156 6 4208 38 16 14 chr6 12151950 12152448 -177127106 + L1PA3 LINE L1 5654 6152 -3 499 233 144 11 chr6 12152515 12152695 -177126859 + MIR SINE MIR 53 256 -6 2235 115 3 0 chr6 12152751 12153055 -177126499 + AluSc SINE Alu 1 305 -4 2271 89 0 7 chr6 12153737 12154029 -177125525 - AluSc SINE Alu -19 290 1 2223 109 0 13 chr6 12154657 12154969 -177124585 - AluSc SINE Alu -1 308 1 235 268 7 43 chr6 12155751 12155889 -177123665 + CT-rich Low_complexity Low_complexity 2 134 0 2134 123 7 7 chr6 12156311 12156621 -177122933 + AluSq SINE Alu 1 310 -3 908 189 18 0 chr6 12156755 12156924 -177122630 - MER5A DNA MER1_type 0 189 18 2335 177 33 17 chr6 12157016 12157435 -177122119 + MSTB LTR MaLR 1 426 0 22 56 0 0 chr6 12157438 12157474 -177122080 + AT_rich Low_complexity Low_complexity 1 36 0 2158 128 3 3 chr6 12158108 12158414 -177121140 - AluSq SINE Alu -7 306 1 2331 93 10 0 chr6 12158588 12158890 -177120664 - AluSg SINE Alu 0 310 6 1127 143 20 25 chr6 12160555 12160758 -177118796 + L1M3 LINE L1 5458 5659 -512 263 143 0 0 chr6 12160767 12160802 -177118752 + Alu SINE Alu 10 44 -257 322 228 97 69 chr6 12161758 12161903 -177117651 + MIR SINE MIR 56 204 -58 2481 301 120 28 chr6 12163737 12165281 -177114273 - L2 LINE L2 0 3313 1617 21 0 0 0 chr6 12165685 12165706 -177113848 + AT_rich Low_complexity Low_complexity 1 21 0 5684 100 23 0 chr6 12165942 12166734 -177112820 + L1PA14 LINE L1 5352 6161 0 249 283 172 0 chr6 12167096 12167195 -177112359 + MIR3 SINE MIR 87 202 -6 207 0 0 0 chr6 12167518 12167541 -177112013 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 641 278 58 11 chr6 12168031 12168302 -177111252 - MLT1G1 LTR MaLR 0 590 199 321 247 22 11 chr6 12168317 12168406 -177111148 + GA-rich Low_complexity Low_complexity 1 90 0 779 270 13 30 chr6 12168406 12168643 -177110911 - MLT1G1 LTR MaLR -360 235 3 1438 217 35 98 chr6 12169167 12169262 -177110292 + MLT1C LTR MaLR 2 101 -366 2203 110 0 19 chr6 12169262 12169570 -177109984 + AluSq SINE Alu 3 304 -9 1438 217 35 98 chr6 12169570 12169902 -177109652 + MLT1C LTR MaLR 101 397 -70 2056 101 14 3 chr6 12169902 12170189 -177109365 - AluSq SINE Alu -22 291 2 1438 217 35 98 chr6 12170189 12170249 -177109305 + MLT1C LTR MaLR 397 459 -8 852 313 58 24 chr6 12171083 12171499 -177108055 + LTR16B LTR ERVL 22 451 -13 580 271 69 32 chr6 12171502 12171690 -177107864 + MIR SINE MIR 51 245 -17 2279 92 3 0 chr6 12171978 12172272 -177107282 + AluSp SINE Alu 1 295 -18 337 330 87 6 chr6 12172371 12172544 -177107010 - L3 LINE CR1 -337 1240 1054 1878 174 80 3 chr6 12174382 12174733 -177104821 - MLT1B LTR MaLR -10 380 3 740 133 6 139 chr6 12174926 12175091 -177104463 + FRAM SINE Alu 1 142 -34 222 37 0 0 chr6 12175091 12175118 -177104436 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2271 100 10 0 chr6 12175846 12176147 -177103407 + AluSp SINE Alu 1 304 -9 252 0 0 0 chr6 12177264 12177292 -177102262 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 657 221 0 0 chr6 12177292 12177423 -177102131 - MER3 DNA MER1_type -78 131 1 1144 292 90 26 chr6 12177802 12178258 -177101296 - LTR16C LTR ERVL -4 487 3 2270 94 14 0 chr6 12179884 12180181 -177099373 - AluSx SINE Alu -11 301 1 1282 271 76 48 chr6 12182978 12183557 -177095997 - MLT1G1 LTR MaLR 0 595 1 268 171 0 0 chr6 12183663 12183704 -177095850 + LTR37B LTR ERV1 52 92 -376 925 217 5 51 chr6 12183728 12183945 -177095609 - MER20 DNA MER1_type -6 213 7 472 185 146 92 chr6 12183964 12184224 -177095330 + LTR37B LTR ERV1 137 410 -58 276 77 0 0 chr6 12184227 12184266 -177095288 + (CA)n Simple_repeat Simple_repeat 1 39 0 794 311 20 17 chr6 12184358 12184654 -177094900 + LTR16B LTR ERVL 37 333 -131 1938 319 52 15 chr6 12184657 12184733 -177094821 - HERV16 LTR ERVL -1907 3089 3017 2375 61 0 10 chr6 12184733 12185030 -177094524 - AluY SINE Alu -17 294 1 1938 319 52 15 chr6 12185030 12186481 -177093073 - HERV16 LTR ERVL -1979 3017 1453 423 246 82 8 chr6 12186511 12186633 -177092921 - HERV16 LTR ERVL -3758 1238 1108 517 283 14 0 chr6 12186636 12186781 -177092773 - LTR16B LTR ERVL -317 147 1 373 299 136 16 chr6 12186905 12187089 -177092465 - MIR SINE MIR -10 252 47 6035 245 57 58 chr6 12187106 12187872 -177091682 - L1MEc LINE L1 -1648 5293 4527 2313 105 0 0 chr6 12187872 12188167 -177091387 + AluSx SINE Alu 1 295 -17 6035 245 57 58 chr6 12188167 12188985 -177090569 - L1MEc LINE L1 -2414 4527 3709 2206 95 3 33 chr6 12188985 12189290 -177090264 - AluSx SINE Alu -16 296 1 6035 245 57 58 chr6 12189290 12189917 -177089637 - L1MEc LINE L1 -3232 3709 3082 885 226 0 0 chr6 12189917 12190081 -177089473 - U1 snRNA snRNA -1 164 1 6035 245 57 58 chr6 12190081 12190314 -177089240 - L1MEc LINE L1 -3859 3082 2850 2384 74 3 23 chr6 12190314 12190624 -177088930 + AluY SINE Alu 1 304 -7 6035 245 57 58 chr6 12190624 12191423 -177088131 - L1MEc LINE L1 -4091 2850 1980 341 249 97 54 chr6 12191403 12191588 -177087966 - L1MEc LINE L1 -6149 274 82 * 6445 102 17 1 chr6 12191620 12193442 -177086112 + L1PA15 LINE L1 4330 6165 0 478 207 27 164 chr6 12193460 12193759 -177085795 - L1MC4a LINE L1 -1210 6598 6359 231 231 90 0 chr6 12193756 12193834 -177085720 - L1ME2 LINE L1 -1 6163 6079 * 22 106 0 0 chr6 12193818 12193903 -177085651 + AT_rich Low_complexity Low_complexity 1 85 0 * 269 336 67 8 chr6 12194023 12194142 -177085412 + L2 LINE L2 3187 3312 -1 235 288 220 0 chr6 12194848 12194966 -177084588 + MIR SINE MIR 48 191 -71 195 69 0 0 chr6 12194974 12195003 -177084551 + (TAA)n Simple_repeat Simple_repeat 1 29 0 671 222 119 11 chr6 12195012 12195197 -177084357 - MIR SINE MIR -11 251 47 200 237 0 0 chr6 12195238 12195276 -177084278 + MIR SINE MIR 195 232 -30 258 367 108 25 chr6 12195301 12195587 -177083967 + L2 LINE L2 2151 2460 -854 811 141 4 150 chr6 12195860 12196087 -177083467 + MER3 DNA MER1_type 16 209 0 317 276 191 0 chr6 12196087 12196192 -177083362 + L2 LINE L2 3148 3272 0 3433 259 74 47 chr6 12196340 12197832 -177081722 + L1ME LINE L1 19 1470 -4610 2313 103 0 3 chr6 12197832 12198142 -177081412 - AluSc SINE Alu 0 309 1 3433 259 74 47 chr6 12198142 12199661 -177079893 + L1ME LINE L1 1470 3131 -2949 2156 132 0 0 chr6 12199661 12199972 -177079582 + AluSx SINE Alu 1 311 -1 3433 259 74 47 chr6 12199972 12200485 -177079069 + L1ME LINE L1 3131 3629 -2451 21 0 0 0 chr6 12203137 12203158 -177076396 + AT_rich Low_complexity Low_complexity 1 21 0 5190 120 6 8 chr6 12203406 12204209 -177075345 + L1PB4 LINE L1 5349 6150 -6 1150 254 191 9 chr6 12204226 12205006 -177074548 + L1ME LINE L1 3885 4880 -1200 311 289 26 58 chr6 12205185 12205341 -177074213 - L1ME4a LINE L1 -5 6116 5966 2189 101 0 3 chr6 12206281 12206567 -177072987 + AluSg SINE Alu 1 285 -25 25 0 0 0 chr6 12206781 12206806 -177072748 + AT_rich Low_complexity Low_complexity 1 25 0 5867 128 8 3 chr6 12206806 12207720 -177071834 - L1PA16 LINE L1 -9 6157 5238 2184 117 3 3 chr6 12207888 12208187 -177071367 - AluSx SINE Alu -13 299 1 182 338 108 43 chr6 12209064 12209295 -177070259 - L2 LINE L2 -210 3062 2817 2035 192 63 18 chr6 12210140 12210582 -177068972 + MLT1C LTR MaLR 6 467 0 320 231 164 0 chr6 12210582 12210686 -177068868 + MIR SINE MIR 128 248 -14 741 172 0 0 chr6 12210687 12210815 -177068739 + FLAM_A SINE Alu 1 128 -5 599 297 107 10 chr6 12211152 12211452 -177068102 + MARNA DNA Mariner 64 392 -194 355 199 72 14 chr6 12212640 12212792 -177066762 + (TA)n Simple_repeat Simple_repeat 1 143 -1706 6393 141 78 18 chr6 12212792 12213060 -177066494 + Tigger3b DNA MER2_type 2 252 -2776 2124 112 7 3 chr6 12213060 12213355 -177066199 + AluSx SINE Alu 1 296 -16 6393 141 78 18 chr6 12213355 12214245 -177065309 + Tigger3b DNA MER2_type 252 1230 -1 355 199 72 14 chr6 12214245 12214387 -177065167 + (TA)n Simple_repeat Simple_repeat 143 1849 0 5400 163 32 8 chr6 12214669 12216049 -177063505 + L1MA3 LINE L1 4611 6038 -267 2249 111 0 0 chr6 12216049 12216347 -177063207 + AluSq SINE Alu 1 298 -15 5400 163 32 8 chr6 12216347 12216622 -177062932 + L1MA3 LINE L1 6038 6305 0 40 27 0 41 chr6 12216623 12216696 -177062858 + AT_rich Low_complexity Low_complexity 1 70 0 2248 139 30 3 chr6 12217169 12217666 -177061888 - LTR24B LTR ERV1 -7 569 1 880 245 129 19 chr6 12217682 12218008 -177061546 - MLT1J1 LTR MaLR -93 357 1 420 274 127 0 chr6 12218133 12218290 -177061264 + MIR SINE MIR 80 256 -6 1562 197 181 29 chr6 12218441 12218888 -177060666 + MLT2B1 LTR ERVL 5 519 -1 21 0 0 0 chr6 12219351 12219372 -177060182 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 12219397 12219425 -177060129 + AT_rich Low_complexity Low_complexity 1 28 0 277 299 84 0 chr6 12219429 12219536 -177060018 - MIR SINE MIR 0 262 147 378 308 0 54 chr6 12219586 12219716 -177059838 - MIR SINE MIR -108 154 32 355 281 104 45 chr6 12220121 12220409 -177059145 + L1M4 LINE L1 2255 2559 -3587 556 167 0 0 chr6 12220705 12220825 -177058729 - MER96B DNA MER1_type? -238 179 60 521 202 28 90 chr6 12220718 12220896 -177058658 + MER96B DNA MER1_type? 250 416 -1 * 2305 68 0 0 chr6 12221002 12221297 -177058257 + THE1-int LTR MaLR 1286 1580 0 1083 110 27 82 chr6 12221311 12221530 -177058024 + THE1B LTR MaLR 157 363 -1 377 98 0 0 chr6 12221532 12221583 -177057971 + THE1B-int LTR MaLR 2 52 -1528 202 337 12 36 chr6 12221865 12221948 -177057606 - L3b LINE CR1 -124 1459 1379 256 151 132 0 chr6 12222287 12222340 -177057214 - L2 LINE L2 -4 3309 3250 252 312 101 9 chr6 12222656 12222765 -177056789 + MIR3 SINE MIR 85 203 -5 312 290 108 89 chr6 12223770 12224646 -177054908 - L1M2 LINE L1 -5442 1407 677 * 349 314 121 54 chr6 12224268 12224657 -177054897 + L1M2 LINE L1 541 955 -5894 14161 114 52 18 chr6 12226261 12228600 -177050954 - Tigger1 DNA MER2_type 0 2418 1 508 285 220 0 chr6 12229239 12229439 -177050115 - MIR SINE MIR -12 250 7 327 256 112 56 chr6 12229554 12229679 -177049875 + L2 LINE L2 3137 3268 -4 310 292 193 12 chr6 12229828 12229989 -177049565 - MIR SINE MIR -10 252 63 262 341 45 11 chr6 12230449 12230537 -177049017 - MIR SINE MIR -99 109 19 1277 146 78 0 chr6 12230595 12230814 -177048740 + MER46A DNA MER2_type 1 236 0 423 0 0 0 chr6 12231687 12231734 -177047820 + (TG)n Simple_repeat Simple_repeat 2 48 0 1573 184 100 10 chr6 12231762 12231847 -177047707 - MER44D DNA MER2_type -1883 608 532 6754 126 66 14 chr6 12231847 12232174 -177047380 + Tigger3b DNA MER2_type 1 310 -2718 2298 59 0 21 chr6 12232174 12232460 -177047094 + AluY SINE Alu 27 306 -5 6754 126 66 14 chr6 12232460 12233303 -177046251 + Tigger3b DNA MER2_type 310 1231 0 1573 184 100 10 chr6 12233303 12233527 -177046027 - MER44D DNA MER2_type -1959 532 1 7157 47 12 1 chr6 12234433 12235511 -177044043 + L1PA5 LINE L1 5066 6154 0 229 286 48 0 chr6 12235596 12235659 -177043895 - MIR SINE MIR -11 251 186 2554 53 0 0 chr6 12235806 12236108 -177043446 + AluY SINE Alu 1 302 -9 809 144 0 0 chr6 12236445 12236563 -177042991 - FLAM_C SINE Alu -25 118 1 2100 108 10 10 chr6 12236600 12236897 -177042657 - AluSx SINE Alu -15 297 1 601 255 13 13 chr6 12237026 12237175 -177042379 - MIR SINE MIR -2 260 112 1320 213 163 42 chr6 12237360 12237839 -177041715 - MLT1F LTR MaLR 0 542 6 216 352 77 0 chr6 12238022 12238113 -177041441 - L2 LINE L2 -17 3255 3158 300 321 66 7 chr6 12238425 12238562 -177040992 + MER5A DNA MER1_type 18 162 -27 21 0 0 0 chr6 12238593 12238614 -177040940 + AT_rich Low_complexity Low_complexity 1 21 0 3305 157 65 25 chr6 12238885 12239521 -177040033 - LTR51 LTR ERV1 0 671 11 966 196 105 24 chr6 12239524 12239733 -177039821 + MER8 DNA MER2_type 14 239 0 254 298 106 11 chr6 12239930 12240024 -177039530 + MIR SINE MIR 37 139 -69 1224 242 27 67 chr6 12241351 12242015 -177037539 - L1MCc LINE L1 -4553 2569 1735 3390 256 94 13 chr6 12242030 12243289 -177036265 - L1MCc LINE L1 -4858 1564 188 25 0 0 0 chr6 12243380 12243405 -177036149 + AT_rich Low_complexity Low_complexity 1 25 0 909 91 0 15 chr6 12243496 12243628 -177035926 + L1PA10 LINE L1 6035 6164 -4 221 288 72 24 chr6 12243808 12243933 -177035621 + L2 LINE L2 2411 2541 -773 1138 131 0 29 chr6 12244021 12244196 -177035358 - AluJo SINE Alu -22 290 121 756 184 0 84 chr6 12244527 12244706 -177034848 + MER5B DNA MER1_type 1 164 -14 1093 206 73 24 chr6 12245108 12245286 -177034268 - MER58B DNA MER1_type -2119 301 102 1651 181 40 13 chr6 12245286 12245590 -177033964 - AluJo SINE Alu 0 312 1 1093 206 73 24 chr6 12245590 12245698 -177033856 - MER58B DNA MER1_type -2318 102 1 28 0 0 0 chr6 12245934 12245962 -177033592 + AT_rich Low_complexity Low_complexity 1 28 0 209 194 0 0 chr6 12246194 12246230 -177033324 - MER5B DNA MER1_type -142 36 1 1959 90 7 25 chr6 12246261 12246538 -177033016 - AluY SINE Alu -2 309 38 809 179 0 8 chr6 12246568 12246702 -177032852 + FLAM_A SINE Alu 1 133 0 310 256 105 88 chr6 12246717 12246955 -177032599 - L1ME4a LINE L1 -12 6109 5868 24 32 0 0 chr6 12248372 12248403 -177031151 + AT_rich Low_complexity Low_complexity 1 31 0 1227 190 65 27 chr6 12248682 12249019 -177030535 - L1MD2 LINE L1 -1 6358 6009 23 33 0 0 chr6 12249099 12249129 -177030425 + AT_rich Low_complexity Low_complexity 1 30 0 1835 112 4 0 chr6 12249164 12249406 -177030148 + AluSp SINE Alu 1 243 -70 1077 198 49 64 chr6 12249459 12249787 -177029767 - MER21A LTR ERV1 -65 866 544 1819 171 0 16 chr6 12249792 12250096 -177029458 + AluJo SINE Alu 1 299 -13 2031 130 46 16 chr6 12250096 12250466 -177029088 - L1MB2 LINE L1 -257 5914 5534 282 177 63 13 chr6 12251620 12251699 -177027855 - MIR SINE MIR -13 249 167 3119 180 83 9 chr6 12252579 12253262 -177026292 - MER50 LTR ERV1 0 734 1 233 315 24 39 chr6 12253886 12254013 -177025541 - L2 LINE L2 -460 2854 2730 313 349 9 0 chr6 12254089 12254198 -177025356 + L2 LINE L2 3200 3309 -4 279 273 0 39 chr6 12254199 12254276 -177025278 + polypurine Low_complexity Low_complexity 2 75 0 402 246 26 7 chr6 12255087 12255305 -177024249 - L1ME LINE L1 -683 5481 5258 487 323 43 13 chr6 12255328 12255560 -177023994 - L1ME LINE L1 -912 5234 4996 742 214 78 29 chr6 12255567 12255773 -177023781 - MER58A DNA MER1_type 0 224 9 393 276 95 40 chr6 12255944 12256440 -177023114 - L1ME LINE L1 -1311 4835 4313 308 285 65 46 chr6 12256632 12256892 -177022662 + L1ME3A LINE L1 3414 3678 -2468 796 203 56 10 chr6 12256949 12257146 -177022408 - MER58 DNA MER1_type -2212 208 3 862 201 0 0 chr6 12257283 12257437 -177022117 - FRAM SINE Alu -3 173 20 843 267 74 65 chr6 12257802 12258470 -177021084 + L1ME3A LINE L1 5166 5842 -328 254 132 19 0 chr6 12258873 12258926 -177020628 + (CATA)n Simple_repeat Simple_repeat 3 56 0 383 305 134 25 chr6 12258948 12259187 -177020367 - L1MC4a LINE L1 -1903 5905 5641 446 238 47 35 chr6 12259294 12259466 -177020088 - L1MC4a LINE L1 -1070 5076 4903 583 271 173 0 chr6 12259515 12259729 -177019825 - MIR SINE MIR -2 260 10 522 289 80 20 chr6 12260165 12260366 -177019188 + MIR SINE MIR 28 240 -22 198 231 39 19 chr6 12260811 12260863 -177018691 + L3 LINE CR1 1514 1566 -11 36 53 0 0 chr6 12261087 12261144 -177018410 + AT_rich Low_complexity Low_complexity 1 57 0 22 35 0 0 chr6 12264470 12264499 -177015055 + AT_rich Low_complexity Low_complexity 1 29 0 630 279 95 14 chr6 12265313 12265535 -177014019 + MIR SINE MIR 5 244 -18 2290 107 7 0 chr6 12266110 12266419 -177013135 - AluSp SINE Alu -2 311 1 23 54 0 0 chr6 12269067 12269104 -177010450 + AT_rich Low_complexity Low_complexity 1 37 0 1367 127 42 5 chr6 12269769 12269982 -177009572 + AluSg/x SINE Alu 83 303 -9 467 267 112 21 chr6 12270088 12270275 -177009279 - MIR SINE MIR -2 260 57 862 183 14 0 chr6 12270964 12271106 -177008448 - FRAM SINE Alu -32 144 1 642 211 8 15 chr6 12271296 12271429 -177008125 - FLAM_A SINE Alu -1 132 1 608 182 16 33 chr6 12272118 12272239 -177007315 - FLAM_A SINE Alu -11 131 13 300 327 40 0 chr6 12272343 12272444 -177007110 + MIR SINE MIR 39 143 -65 2085 116 0 7 chr6 12273126 12273418 -177006136 + AluSx SINE Alu 11 300 -12 4717 61 10 0 chr6 12273606 12274214 -177005340 - L1PA8A LINE L1 -4 6127 5514 205 247 79 34 chr6 12274272 12274361 -177005193 + MIR SINE MIR 47 139 -123 270 250 29 0 chr6 12274660 12274728 -177004826 - MIR SINE MIR -111 151 82 2428 85 0 0 chr6 12274816 12275111 -177004443 - AluSq SINE Alu -18 295 1 1873 156 17 43 chr6 12276884 12277161 -177002393 - MER1B DNA MER1_type -2373 337 69 2639 39 0 3 chr6 12277161 12277471 -177002083 - AluY SINE Alu -2 309 1 1873 156 17 43 chr6 12277471 12277539 -177002015 - MER1B DNA MER1_type -2641 69 1 2385 49 0 29 chr6 12277568 12277875 -177001679 - AluY SINE Alu -12 299 2 269 297 25 0 chr6 12277920 12278038 -177001516 - MER103 DNA DNA -10 156 36 1972 115 0 0 chr6 12278229 12278490 -177001064 - AluSx SINE Alu -51 261 1 438 253 99 12 chr6 12279248 12279410 -177000144 + MIR SINE MIR 13 188 -74 1774 152 3 7 chr6 12279636 12279925 -176999629 - AluJo SINE Alu -24 288 1 1096 206 42 36 chr6 12281520 12281826 -176997728 + L1MC4 LINE L1 7735 8042 0 28 48 0 0 chr6 12281881 12281923 -176997631 + AT_rich Low_complexity Low_complexity 1 42 0 270 81 0 0 chr6 12282436 12282473 -176997081 + (T)n Simple_repeat Simple_repeat 1 37 0 2362 74 3 3 chr6 12282488 12282785 -176996769 + AluY SINE Alu 2 298 -13 597 190 0 0 chr6 12282788 12282909 -176996645 - L1MA8 LINE L1 -3 6288 6168 364 161 99 0 chr6 12282909 12282990 -176996564 - Tigger3(Golem) DNA MER2_type -2 3027 2939 * 1262 216 87 0 chr6 12282988 12283298 -176996256 - Tigger3(Golem) DNA MER2_type -2692 337 1 3138 143 62 15 chr6 12283301 12283918 -176995636 - L1MA8 LINE L1 -127 6164 5519 31 0 0 0 chr6 12284335 12284366 -176995188 + AT_rich Low_complexity Low_complexity 1 31 0 1535 168 109 64 chr6 12284659 12285099 -176994455 - MER31B LTR ERV1 -6 460 1 940 185 69 14 chr6 12285205 12285540 -176994014 + MER31B LTR ERV1 1 466 0 2259 95 0 0 chr6 12285776 12286061 -176993493 + AluSg SINE Alu 1 285 -25 307 305 0 0 chr6 12286889 12286971 -176992583 + CT-rich Low_complexity Low_complexity 4 85 0 735 156 50 0 chr6 12287443 12287584 -176991970 - L1MA9 LINE L1 -5 6307 6160 2294 103 3 3 chr6 12287612 12287924 -176991630 - AluSx SINE Alu 0 312 1 490 183 11 48 chr6 12290914 12291100 -176988454 + GA-rich Low_complexity Low_complexity 2 180 0 345 281 83 0 chr6 12294259 12294380 -176985174 - L2 LINE L2 0 3313 3183 203 223 54 27 chr6 12294727 12294833 -176984721 + (TA)n Simple_repeat Simple_repeat 1 110 0 1496 207 74 0 chr6 12294833 12295157 -176984397 - MER7A DNA MER2_type 0 346 1 3687 196 70 78 chr6 12296654 12297262 -176982292 + MER45B DNA AcHobo 40 651 -930 2338 102 0 0 chr6 12297262 12297582 -176981972 + AluSx SINE Alu 1 320 0 3687 196 70 78 chr6 12297582 12297717 -176981837 + MER45B DNA AcHobo 651 786 -795 2024 122 0 20 chr6 12297717 12298046 -176981508 - AluSx SINE Alu 0 323 1 3687 196 70 78 chr6 12298046 12298289 -176981265 + MER45B DNA AcHobo 786 1024 -16 251 200 40 0 chr6 12298429 12298479 -176981075 - LTR16C LTR ERVL 0 491 440 2270 141 10 28 chr6 12298736 12299133 -176980421 + MLT1B LTR MaLR 1 390 0 507 283 21 16 chr6 12299246 12299433 -176980121 + MIR SINE MIR 26 213 -49 293 325 55 30 chr6 12299643 12299843 -176979711 - MIR SINE MIR -19 243 39 193 286 0 65 chr6 12299895 12299972 -176979582 - MIR SINE MIR -78 184 113 466 301 54 12 chr6 12300244 12300410 -176979144 + MIR3 SINE MIR 25 197 -11 357 293 184 0 chr6 12301435 12301582 -176977972 + MER5A DNA MER1_type 16 189 0 237 33 0 0 chr6 12301968 12301998 -176977556 + (CA)n Simple_repeat Simple_repeat 2 31 0 940 9 0 0 chr6 12302150 12302256 -176977298 + AluY SINE Alu 206 311 0 195 42 0 0 chr6 12302790 12302814 -176976740 + (TG)n Simple_repeat Simple_repeat 2 25 0 244 199 0 38 chr6 12302826 12302957 -176976597 + (TA)n Simple_repeat Simple_repeat 1 126 0 223 106 32 53 chr6 12303022 12303116 -176976438 + (TA)n Simple_repeat Simple_repeat 2 93 0 257 83 95 35 chr6 12303191 12303360 -176976194 + (TA)n Simple_repeat Simple_repeat 2 180 0 320 217 32 25 chr6 12303360 12303517 -176976037 + (TTATA)n Simple_repeat Simple_repeat 5 162 0 230 127 56 0 chr6 12303542 12303613 -176975941 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 335 169 8 49 chr6 12303616 12303866 -176975688 + (TA)n Simple_repeat Simple_repeat 1 239 0 237 234 39 0 chr6 12303878 12303955 -176975599 + (TA)n Simple_repeat Simple_repeat 1 80 0 2304 178 85 17 chr6 12304221 12304694 -176974860 - MLT1D LTR MaLR 0 505 1 2393 107 3 0 chr6 12305069 12305377 -176974177 + AluSq SINE Alu 1 309 -4 652 239 90 50 chr6 12306160 12306361 -176973193 - MER63A DNA MER1_type -1 209 1 240 346 8 0 chr6 12308055 12308188 -176971366 - L2 LINE L2 -785 2529 2396 261 257 50 30 chr6 12308558 12308659 -176970895 - L2 LINE L2 -1 3271 3169 1538 144 95 25 chr6 12308750 12309035 -176970519 - MLT1B LTR MaLR -85 305 1 7919 19 0 1 chr6 12309695 12311187 -176968367 - L1PA3 LINE L1 -3 6152 4660 631 267 224 0 chr6 12312037 12312318 -176967236 - LTR16A LTR ERVL -2 448 105 2023 161 45 29 chr6 12312320 12312741 -176966813 - MSTA LTR MaLR 0 428 1 327 313 92 54 chr6 12312919 12313333 -176966221 - MLT1L LTR MaLR -27 588 54 1669 107 0 0 chr6 12313610 12313825 -176965729 + AluSq SINE Alu 83 297 -16 292 336 21 7 chr6 12313825 12313965 -176965589 - L2 LINE L2 -954 2360 2219 1377 217 23 54 chr6 12314993 12315380 -176964174 + MLT1C LTR MaLR 53 427 -40 2325 114 0 0 chr6 12315415 12315721 -176963833 + AluSc SINE Alu 1 306 -3 208 224 59 94 chr6 12316088 12316173 -176963381 - MIR SINE MIR -71 191 110 469 162 0 178 chr6 12317381 12317572 -176961982 + MER69A DNA AcHobo 1 157 -20 219 148 33 16 chr6 12318166 12318227 -176961327 + CT-rich Low_complexity Low_complexity 2 63 0 250 282 14 0 chr6 12319145 12319216 -176960338 - L2 LINE L2 -2 3311 3240 238 289 116 8 chr6 12319694 12319815 -176959739 + MIR SINE MIR 118 251 -11 218 286 0 16 chr6 12320869 12320932 -176958622 - L2 LINE L2 -9 3304 3243 486 299 13 56 chr6 12321077 12321311 -176958243 - MARNA DNA Mariner -351 235 12 1605 118 12 16 chr6 12321700 12321945 -176957609 + AluJo SINE Alu 51 294 -18 418 28 0 56 chr6 12322054 12322126 -176957428 + SVA Other Other 1319 1386 0 24 67 0 0 chr6 12322135 12322180 -176957374 + AT_rich Low_complexity Low_complexity 1 45 0 309 323 21 0 chr6 12323045 12323138 -176956416 + MIR3 SINE MIR 86 180 -28 1160 127 0 0 chr6 12324019 12324176 -176955378 - AluSc SINE Alu -19 290 134 231 289 124 85 chr6 12324825 12325212 -176954342 + L2 LINE L2 2871 3272 0 215 133 22 0 chr6 12325474 12325519 -176954035 + (TG)n Simple_repeat Simple_repeat 1 46 0 496 175 108 0 chr6 12326904 12327024 -176952530 - MIR3 SINE MIR -5 203 71 2252 123 29 56 chr6 12327846 12328007 -176951547 + THE1B LTR MaLR 1 165 -199 2205 62 80 0 chr6 12328007 12328281 -176951273 - AluY SINE Alu -15 296 1 2252 123 29 56 chr6 12328281 12328493 -176951061 + THE1B LTR MaLR 165 364 0 202 250 0 33 chr6 12329576 12329636 -176949918 - MIR SINE MIR -66 142 85 1806 173 10 0 chr6 12330157 12330452 -176949102 + 7SLRNA srpRNA srpRNA 20 317 -3 2025 134 7 3 chr6 12330610 12330900 -176948654 + AluSc SINE Alu 1 291 -18 2328 105 0 0 chr6 12332002 12332297 -176947257 + AluSq SINE Alu 1 295 -18 336 297 48 41 chr6 12333567 12333738 -176945816 - MIR3 SINE MIR -15 193 20 705 233 0 11 chr6 12333785 12333961 -176945593 - L1MB8 LINE L1 0 6178 6005 226 231 0 19 chr6 12333963 12334015 -176945539 - L1MB8 LINE L1 -790 5384 5334 626 198 23 4 chr6 12334018 12334151 -176945403 - L1MB8 LINE L1 -170 5994 5857 1172 93 0 0 chr6 12334151 12334302 -176945252 - AluY SINE Alu -3 308 158 3219 170 35 29 chr6 12334302 12334749 -176944805 - L1MB8 LINE L1 -299 5879 5427 5219 109 30 8 chr6 12334749 12335512 -176944042 + LTR17 LTR ERV1 1 780 0 3219 170 35 29 chr6 12335512 12335795 -176943759 - L1MB8 LINE L1 -751 5427 5147 210 37 0 0 chr6 12337305 12337332 -176942222 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 327 304 88 48 chr6 12337505 12337778 -176941776 - MLT1L LTR MaLR -330 285 2 2085 109 0 0 chr6 12338174 12338448 -176941106 - AluSx SINE Alu -30 282 9 1158 68 0 0 chr6 12338459 12338592 -176940962 - AluSq/x SINE Alu -179 133 1 2369 79 10 10 chr6 12338602 12338907 -176940647 - AluSp SINE Alu -8 305 1 181 322 122 0 chr6 12339034 12339124 -176940430 - MIR SINE MIR -115 147 47 474 33 0 0 chr6 12339454 12339514 -176940040 + (TG)n Simple_repeat Simple_repeat 2 61 0 1479 168 50 21 chr6 12340135 12340415 -176939139 + AluJo SINE Alu 2 289 -23 310 303 25 8 chr6 12340588 12340707 -176938847 + MIR3 SINE MIR 65 185 -23 1149 50 21 0 chr6 12341618 12341759 -176937795 - AluY SINE Alu 0 311 168 225 94 0 0 chr6 12342538 12342570 -176936984 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 267 333 61 9 chr6 12342575 12342689 -176936865 - L2 LINE L2 -16 3256 3137 208 328 55 47 chr6 12342809 12343044 -176936510 - L2 LINE L2 -212 3060 2824 432 0 0 0 chr6 12343119 12343167 -176936387 + (CA)n Simple_repeat Simple_repeat 2 49 0 377 329 43 14 chr6 12343232 12343439 -176936115 - HERVL LTR ERVL -3685 1969 1757 302 299 60 15 chr6 12343947 12344148 -176935406 - HERVL LTR ERVL -4577 1187 978 660 304 50 5 chr6 12344675 12344876 -176934678 + LTR16C LTR ERVL 50 259 -232 2026 142 30 0 chr6 12344878 12345180 -176934374 - AluSx SINE Alu -1 311 1 227 339 157 0 chr6 12345698 12345813 -176933741 + MIR3 SINE MIR 63 195 -13 247 246 0 0 chr6 12345818 12345875 -176933679 + GA-rich Low_complexity Low_complexity 3 59 0 360 306 82 20 chr6 12345885 12346081 -176933473 - MIR SINE MIR -54 208 1 448 222 187 12 chr6 12346480 12346651 -176932903 + L1ME3A LINE L1 5782 5982 -188 244 273 82 87 chr6 12346654 12346885 -176932669 + L1ME3A LINE L1 5924 6153 -17 1378 254 49 5 chr6 12346932 12347361 -176932193 + L1MD2 LINE L1 3375 3822 -2324 327 131 0 47 chr6 12347361 12347379 -176932175 - AluS SINE Alu -242 57 40 1505 129 21 0 chr6 12347379 12347612 -176931942 - AluSg/x SINE Alu -2 308 71 327 131 0 47 chr6 12347612 12347671 -176931883 - AluS SINE Alu -259 40 1 5332 161 16 5 chr6 12347702 12347986 -176931568 - L1PA16 LINE L1 -56 6110 5831 2111 135 6 0 chr6 12347986 12348297 -176931257 - AluSp SINE Alu 0 313 1 5332 161 16 5 chr6 12348297 12349592 -176929962 - L1PA16 LINE L1 -335 5831 4517 1546 182 40 17 chr6 12349617 12349913 -176929641 - MER61A LTR ERV1 -40 303 1 1116 224 54 62 chr6 12349918 12350307 -176929247 - L1 LINE L1 -1636 4510 4125 1045 243 68 0 chr6 12350307 12350587 -176928967 + L1P LINE L1 3826 4124 -2022 1028 211 13 125 chr6 12350583 12350996 -176928558 + L1MD2 LINE L1 5774 6074 -168 * 545 221 18 37 chr6 12350997 12351160 -176928394 + L1MD3 LINE L1 7835 7994 -1 374 289 49 104 chr6 12351163 12351595 -176927959 - L2 LINE L2 -621 2693 2286 25 0 0 0 chr6 12351629 12351654 -176927900 + AT_rich Low_complexity Low_complexity 1 25 0 298 89 357 0 chr6 12351773 12351829 -176927725 - MADE1 DNA Mariner 0 80 5 442 340 149 0 chr6 12351830 12352092 -176927462 - L2 LINE L2 -1262 2052 1752 1156 135 6 0 chr6 12352824 12352994 -176926560 - AluSg/x SINE Alu -13 299 129 867 144 0 0 chr6 12353020 12353145 -176926409 + AluSg SINE Alu 1 125 -185 246 116 0 0 chr6 12353475 12353518 -176926036 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 250 261 0 27 chr6 12353542 12353616 -176925938 - L1MD3 LINE L1 -21 8021 7897 695 174 237 19 chr6 12353627 12353834 -176925720 - L1MC4a LINE L1 -159 7649 7398 309 233 56 44 chr6 12354488 12354578 -176924976 - L2 LINE L2 0 3272 3182 304 351 102 48 chr6 12354633 12354878 -176924676 - L2 LINE L2 -358 2956 2683 3052 63 68 36 chr6 12354878 12355322 -176924232 - LTR22A LTR ERVK 0 458 1 304 351 102 48 chr6 12355322 12355449 -176924105 - L2 LINE L2 -631 2683 2564 698 228 60 11 chr6 12355509 12355700 -176923854 + MIR SINE MIR 46 243 -19 241 240 67 0 chr6 12355823 12355898 -176923656 - LTR67 LTR ERVL 0 557 478 3498 269 53 53 chr6 12355923 12357595 -176921959 + L1MEc LINE L1 44 1716 -4680 2419 224 59 48 chr6 12357601 12358819 -176920735 + L1MEc LINE L1 1914 3114 -3101 421 227 0 36 chr6 12358831 12358941 -176920613 + L1M4 LINE L1 4762 4867 -1279 282 289 138 19 chr6 12358959 12359118 -176920436 - LTR67 LTR ERVL -269 288 111 195 309 181 11 chr6 12359224 12359318 -176920236 + MIR SINE MIR 103 212 -50 1959 141 64 6 chr6 12360015 12360341 -176919213 - MER7A DNA MER2_type 0 346 4 2673 192 9 24 chr6 12360402 12360949 -176918605 - L1MC3 LINE L1 0 7785 7247 2128 127 7 86 chr6 12361778 12362196 -176917358 - MLT1B LTR MaLR 0 390 6 3008 234 60 30 chr6 12362198 12363259 -176916295 - Charlie2a DNA MER1_type -7 2855 1763 652 325 50 14 chr6 12363270 12363550 -176916004 - LTR16C LTR ERVL 0 491 202 3177 225 119 49 chr6 12363753 12364031 -176915523 - Charlie2a DNA MER1_type -1176 1686 1429 1958 144 7 10 chr6 12364031 12364336 -176915218 + AluJb SINE Alu 1 304 -8 3177 225 119 49 chr6 12364336 12365430 -176914124 - Charlie2a DNA MER1_type -1433 1429 217 585 303 67 14 chr6 12365519 12365803 -176913751 - L1ME LINE L1 -554 5616 5318 739 287 113 4 chr6 12365956 12366186 -176913368 - MIR SINE MIR -2 260 6 250 333 118 0 chr6 12366314 12366416 -176913138 - L2 LINE L2 -23 3249 3136 3416 119 20 4 chr6 12366513 12367016 -176912538 - MER9 LTR ERVK 0 511 1 232 326 240 27 chr6 12367028 12367286 -176912268 - L3 LINE CR1 -612 965 653 1966 237 59 11 chr6 12368541 12369064 -176910490 + Cheshire DNA MER1_type 1 548 -1872 * 7446 198 47 15 chr6 12369060 12370705 -176908849 + Cheshire DNA MER1_type 723 2420 0 1166 316 67 48 chr6 12370782 12371622 -176907932 - ERVL LTR ERVL -4146 1618 763 203 138 0 0 chr6 12371925 12371954 -176907600 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 411 344 13 0 chr6 12372851 12373002 -176906552 + MIR3 SINE MIR 54 206 -2 399 41 0 0 chr6 12373222 12373271 -176906283 + (CA)n Simple_repeat Simple_repeat 2 50 0 186 43 0 0 chr6 12373270 12373293 -176906261 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 193 75 50 25 chr6 12374064 12374104 -176905450 + CT-rich Low_complexity Low_complexity 2 42 0 758 220 143 67 chr6 12374521 12374652 -176904902 + LTR50 LTR ERVL 1 121 -674 2036 102 9 78 chr6 12374652 12374984 -176904570 - AluSx SINE Alu -3 309 1 758 220 143 67 chr6 12374984 12375166 -176904388 + LTR50 LTR ERVL 121 338 -457 203 138 0 0 chr6 12375517 12375546 -176904008 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 1166 316 67 48 chr6 12375849 12376689 -176902865 + ERVL LTR ERVL 763 1618 -4146 7480 198 47 15 chr6 12376766 12378410 -176901144 - Cheshire DNA MER1_type 0 2420 723 1992 238 55 11 chr6 12378406 12378931 -176900623 - Cheshire DNA MER1_type -1872 548 1 * 232 326 240 27 chr6 12380186 12380444 -176899110 + L3 LINE CR1 653 965 -612 3386 119 20 6 chr6 12380456 12380960 -176898594 + MER9 LTR ERVK 1 511 0 250 333 118 0 chr6 12381057 12381159 -176898395 + L2 LINE L2 3136 3249 -23 752 283 113 4 chr6 12381287 12381517 -176898037 + MIR SINE MIR 6 260 -2 585 303 67 14 chr6 12381670 12381954 -176897600 + L1ME LINE L1 5318 5616 -554 3181 225 119 49 chr6 12382043 12383137 -176896417 + Charlie2a DNA MER1_type 217 1429 -1433 1958 144 7 10 chr6 12383137 12383442 -176896112 - AluJb SINE Alu -8 304 1 3181 225 119 49 chr6 12383442 12383720 -176895834 + Charlie2a DNA MER1_type 1429 1686 -1176 652 325 50 14 chr6 12383923 12384203 -176895351 + LTR16C LTR ERVL 202 491 0 2994 235 60 30 chr6 12384214 12385275 -176894279 + Charlie2a DNA MER1_type 1763 2855 -7 2128 127 7 86 chr6 12385277 12385695 -176893859 + MLT1B LTR MaLR 6 390 0 2673 192 9 24 chr6 12386524 12387071 -176892483 + L1MC3 LINE L1 7247 7785 0 1959 141 64 6 chr6 12387132 12387458 -176892096 + MER7A DNA MER2_type 4 346 0 195 309 181 11 chr6 12388155 12388249 -176891305 - MIR SINE MIR -50 212 103 282 289 138 19 chr6 12388355 12388514 -176891040 + LTR67 LTR ERVL 111 288 -269 431 225 83 0 chr6 12388532 12388652 -176890902 - L1M4 LINE L1 -1279 4936 4807 2422 229 73 49 chr6 12388654 12389872 -176889682 - L1MEc LINE L1 -3101 3114 1914 3512 269 53 53 chr6 12389878 12391550 -176888004 - L1MEc LINE L1 -4680 1716 44 241 240 67 0 chr6 12391575 12391650 -176887904 + LTR67 LTR ERVL 478 557 0 698 228 60 11 chr6 12391773 12391964 -176887590 - MIR SINE MIR -19 243 46 295 354 102 48 chr6 12392024 12392151 -176887403 + L2 LINE L2 2564 2683 -631 3052 63 68 36 chr6 12392151 12392595 -176886959 + LTR22A LTR ERVK 1 458 0 295 354 102 48 chr6 12392595 12392840 -176886714 + L2 LINE L2 2683 2956 -358 309 233 56 44 chr6 12392895 12392985 -176886569 + L2 LINE L2 3182 3272 0 695 174 237 19 chr6 12393639 12393846 -176885708 + L1MC4a LINE L1 7398 7649 -159 250 261 0 27 chr6 12393857 12393931 -176885623 + L1MD3 LINE L1 7897 8021 -21 246 116 0 0 chr6 12393955 12393998 -176885556 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 867 144 0 0 chr6 12394328 12394453 -176885101 - AluSg SINE Alu -185 125 1 1156 135 6 0 chr6 12394479 12394649 -176884905 + AluSg/x SINE Alu 127 297 -13 442 340 149 0 chr6 12395381 12395643 -176883911 + L2 LINE L2 1752 2052 -1262 298 89 357 0 chr6 12395644 12395700 -176883854 - MADE1 DNA Mariner -4 76 1 25 0 0 0 chr6 12395819 12395844 -176883710 + AT_rich Low_complexity Low_complexity 1 25 0 374 289 49 104 chr6 12395878 12396310 -176883244 + L2 LINE L2 2286 2693 -621 545 221 18 37 chr6 12396313 12396476 -176883078 - L1MD3 LINE L1 -1 7994 7835 1028 211 13 125 chr6 12396477 12396890 -176882664 - L1MD2 LINE L1 -168 6074 5774 * 1102 243 68 0 chr6 12396886 12397166 -176882388 - L1 LINE L1 -2022 4124 3826 1189 224 54 62 chr6 12397166 12397555 -176881999 + L1 LINE L1 4125 4510 -1636 1555 182 40 17 chr6 12397560 12397856 -176881698 + MER61A LTR ERV1 1 303 -40 5630 125 46 7 chr6 12397881 12399176 -176880378 + L1PA16 LINE L1 4517 5865 -301 2130 135 6 0 chr6 12399176 12399487 -176880067 + AluSp SINE Alu 1 313 0 5630 125 46 7 chr6 12399487 12399792 -176879762 + L1PA16 LINE L1 5865 6157 -9 317 87 0 11 chr6 12399802 12399859 -176879695 + Alu SINE Alu 1 40 -262 1523 129 21 0 chr6 12399861 12400094 -176879460 + AluSg/x SINE Alu 73 310 -2 1513 254 48 5 chr6 12400101 12400541 -176879013 - L1MD2 LINE L1 -2313 3833 3375 250 273 82 87 chr6 12400588 12400819 -176878735 - L1ME3A LINE L1 -17 6153 5924 466 222 187 12 chr6 12400822 12400993 -176878561 - L1ME3A LINE L1 -188 5982 5782 416 306 82 20 chr6 12401392 12401588 -176877966 + MIR SINE MIR 1 208 -54 247 246 0 0 chr6 12401598 12401655 -176877899 + CT-rich Low_complexity Low_complexity 3 59 0 259 339 157 0 chr6 12401660 12401775 -176877779 - MIR3 SINE MIR -13 195 63 2010 142 30 0 chr6 12402293 12402595 -176876959 + AluSx SINE Alu 1 311 -1 626 304 50 5 chr6 12402597 12402798 -176876756 - LTR16C LTR ERVL -232 259 50 288 304 60 15 chr6 12403325 12403526 -176876028 + ERVL LTR ERVL 978 1187 -4577 376 329 43 14 chr6 12404034 12404241 -176875313 + ERVL LTR ERVL 1757 1969 -3685 288 0 0 0 chr6 12404306 12404338 -176875216 + (TG)n Simple_repeat Simple_repeat 2 33 0 315 302 47 120 chr6 12404413 12404880 -176874674 + L2 LINE L2 2824 3256 -16 225 94 0 0 chr6 12404885 12404917 -176874637 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 1153 43 21 0 chr6 12405699 12405840 -176873714 + AluY SINE Alu 168 311 0 727 283 113 4 chr6 12406320 12406550 -176873004 - MIR SINE MIR -2 260 6 239 333 118 0 chr6 12406678 12406780 -176872774 - L2 LINE L2 -23 3249 3136 3644 119 20 6 chr6 12406877 12407381 -176872173 - MER9 LTR ERVK 0 511 1 218 326 240 27 chr6 12407393 12407651 -176871903 - L3 LINE CR1 -612 965 653 2052 238 57 2 chr6 12408936 12409431 -176870123 + Cheshire DNA MER1_type 27 548 -1872 * 7767 198 47 15 chr6 12409427 12411071 -176868483 + Cheshire DNA MER1_type 723 2420 0 1205 313 67 48 chr6 12411148 12411988 -176867566 - ERVL LTR ERVL -4146 1618 763 203 138 0 0 chr6 12412291 12412320 -176867234 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 773 208 167 67 chr6 12412673 12412853 -176866701 - LTR50 LTR ERVL -452 343 182 2056 102 9 78 chr6 12412853 12413185 -176866369 + AluSx SINE Alu 1 309 -3 773 208 167 67 chr6 12413185 12413316 -176866238 - LTR50 LTR ERVL -613 182 1 193 75 50 25 chr6 12413733 12413773 -176865781 + GA-rich Low_complexity Low_complexity 2 42 0 186 43 0 0 chr6 12414544 12414567 -176864987 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 399 41 0 0 chr6 12414566 12414615 -176864939 + (TG)n Simple_repeat Simple_repeat 2 50 0 398 344 13 0 chr6 12414835 12414986 -176864568 - MIR3 SINE MIR -2 206 54 5804 90 15 4 chr6 12415587 12416396 -176863158 + L1PA13 LINE L1 5346 6163 0 251 387 34 8 chr6 12416639 12416758 -176862796 + MIR3 SINE MIR 39 160 -48 1512 188 189 103 chr6 12416808 12417410 -176862144 + MLT1E1 LTR MaLR 1 654 0 674 211 0 0 chr6 12417410 12417553 -176862001 + FLAM_A SINE Alu 2 144 0 1727 152 157 11 chr6 12419551 12419914 -176859640 + MSTA LTR MaLR 1 416 -12 248 228 18 0 chr6 12420965 12421022 -176858532 + MIR SINE MIR 72 129 -133 357 341 32 0 chr6 12421313 12421439 -176858115 - L2 LINE L2 -4 3309 3180 1807 196 66 62 chr6 12421489 12422019 -176857535 + L1ME2 LINE L1 5631 6162 -2 426 237 21 57 chr6 12422018 12422212 -176857342 - L1M4 LINE L1 -1725 4421 4235 * 708 287 48 63 chr6 12422224 12422385 -176857169 - L1MEd LINE L1 -5014 1105 943 1790 180 20 3 chr6 12422385 12422690 -176856864 - AluSp SINE Alu -3 310 1 708 287 48 63 chr6 12422690 12423116 -176856438 - L1MEd LINE L1 -5176 943 527 1966 130 146 16 chr6 12423473 12423795 -176855759 + THE1B LTR MaLR 1 364 0 183 162 0 0 chr6 12424080 12424117 -176855437 + A-rich Low_complexity Low_complexity 1 37 0 749 207 0 0 chr6 12424255 12424376 -176855178 - FLAM_A SINE Alu -12 121 1 1714 251 83 21 chr6 12424474 12424957 -176854597 - MLT1F LTR MaLR -29 513 1 1789 267 33 100 chr6 12424957 12425631 -176853923 + L1MC4a LINE L1 5276 5903 -1905 1295 147 0 5 chr6 12425871 12426120 -176853434 + AluJo SINE Alu 87 334 0 227 344 0 0 chr6 12426460 12426521 -176853033 + L2 LINE L2 3250 3310 -3 306 0 0 0 chr6 12426885 12426919 -176852635 + (TA)n Simple_repeat Simple_repeat 2 35 0 2129 127 0 0 chr6 12427140 12427488 -176852066 + AluSx SINE Alu 1 312 0 246 316 101 48 chr6 12428104 12428332 -176851222 - MIR SINE MIR -13 249 10 953 205 5 30 chr6 12429189 12429389 -176850165 - MLT2D LTR ERVL 0 414 220 703 209 25 13 chr6 12429751 12429909 -176849645 + MER5B DNA MER1_type 10 169 -9 246 339 161 5 chr6 12430217 12430403 -176849151 + MIR SINE MIR 36 250 -12 1110 189 81 146 chr6 12430556 12430929 -176848625 + MLT1C LTR MaLR 53 449 -18 306 0 0 0 chr6 12430929 12430963 -176848591 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1938 103 0 48 chr6 12430963 12431255 -176848299 - AluSg SINE Alu -32 278 1 1110 189 81 146 chr6 12431255 12431324 -176848230 + MLT1C LTR MaLR 447 467 0 2276 97 3 3 chr6 12432200 12432500 -176847054 + AluSq SINE Alu 2 301 -12 388 263 63 74 chr6 12433162 12433352 -176846202 - MER112 DNA MER1_type -34 226 39 270 351 53 0 chr6 12433486 12433580 -176845974 - L2 LINE L2 -11 3261 3163 297 51 0 0 chr6 12433986 12434025 -176845529 + (CA)n Simple_repeat Simple_repeat 2 40 0 2055 153 0 0 chr6 12434202 12434503 -176845051 + AluSx SINE Alu 1 301 -11 2956 128 17 2 chr6 12435735 12436157 -176843397 - MSTA LTR MaLR 0 428 1 214 282 28 14 chr6 12436221 12436292 -176843262 - MIR SINE MIR -103 159 88 221 294 22 76 chr6 12436530 12436622 -176842932 - MIR SINE MIR -156 106 20 575 181 78 0 chr6 12436628 12436744 -176842810 + LTR64 LTR ERVK 1 125 -433 1567 160 111 0 chr6 12436745 12437033 -176842521 + LTR64 LTR ERVK 227 546 -12 291 209 0 128 chr6 12438735 12438780 -176840774 + MIR SINE MIR 76 107 -101 919 216 14 38 chr6 12438780 12438993 -176840561 - MER63A DNA MER1_type 0 210 3 291 209 0 128 chr6 12438993 12439033 -176840521 + MIR SINE MIR 107 150 -58 21 0 0 0 chr6 12440438 12440459 -176839095 + AT_rich Low_complexity Low_complexity 1 21 0 349 289 40 69 chr6 12440465 12440638 -176838916 + MIR3 SINE MIR 30 197 -11 1473 157 30 90 chr6 12442105 12442437 -176837117 - AluJo SINE Alu 0 312 1 2083 124 0 34 chr6 12443167 12443490 -176836064 - AluSx SINE Alu 0 312 1 194 277 21 0 chr6 12444450 12444497 -176835057 + MIR3 SINE MIR 123 170 -38 410 230 11 11 chr6 12445667 12445754 -176833800 + MER5A DNA MER1_type 20 106 -83 639 251 22 28 chr6 12445846 12446025 -176833529 - MER5B DNA MER1_type 0 178 1 485 338 27 5 chr6 12446356 12446575 -176832979 - MIR SINE MIR -25 237 14 190 315 20 98 chr6 12446796 12446940 -176832614 - MIR3 SINE MIR -19 189 64 1909 50 0 0 chr6 12446940 12447162 -176832392 - AluY SINE Alu -16 295 74 190 315 20 98 chr6 12447162 12447220 -176832334 - MIR3 SINE MIR -144 64 3 184 312 85 35 chr6 12447546 12447687 -176831867 - L2 LINE L2 -149 3123 2976 213 301 39 29 chr6 12447788 12447891 -176831663 - L2 LINE L2 -493 2821 2718 25 0 0 0 chr6 12447984 12448009 -176831545 + AT_rich Low_complexity Low_complexity 1 25 0 2141 108 0 3 chr6 12450241 12450556 -176828998 + AluSq SINE Alu 1 314 0 866 249 21 9 chr6 12451086 12451319 -176828235 + MIR SINE MIR 1 236 -26 235 175 0 0 chr6 12451411 12451451 -176828103 - MLT1I LTR MaLR 0 409 370 301 132 19 0 chr6 12451602 12451655 -176827899 + MER96 DNA MER1_type? 1 54 -121 4715 146 34 59 chr6 12451662 12452170 -176827384 + L1MB3 LINE L1 5165 5684 -499 1664 86 0 5 chr6 12452170 12452380 -176827174 + AluY SINE Alu 89 297 -14 4715 146 34 59 chr6 12452380 12452721 -176826833 + L1MB3 LINE L1 5684 5989 -194 2148 164 132 2 chr6 12452721 12453124 -176826430 + MSTB2 LTR MaLR 3 457 0 4715 146 34 59 chr6 12453124 12453312 -176826242 + L1MB3 LINE L1 5989 6180 -3 231 240 20 0 chr6 12453315 12453365 -176826189 + MER96 DNA MER1_type? 47 97 -78 2225 109 3 0 chr6 12453490 12453784 -176825770 - AluSg SINE Alu -15 295 1 510 173 0 0 chr6 12454369 12454473 -176825081 + GA-rich Low_complexity Low_complexity 1 104 0 402 305 78 95 chr6 12454824 12455234 -176824320 + L2 LINE L2 2867 3269 -3 413 308 8 8 chr6 12456136 12456253 -176823301 + MER5B DNA MER1_type 3 119 -59 247 257 112 107 chr6 12459415 12459602 -176819952 + MIR3 SINE MIR 16 203 -5 348 206 71 71 chr6 12459632 12459787 -176819767 + L2 LINE L2 2589 2743 -571 266 327 109 42 chr6 12459844 12460174 -176819380 + L2 LINE L2 2882 3233 -39 424 308 70 0 chr6 12460705 12460848 -176818706 - MER117 DNA MER1_type 0 197 45 1133 98 252 60 chr6 12462441 12462675 -176816879 - AluSg1 SINE Alu -30 279 1 240 231 0 0 chr6 12462685 12462763 -176816791 + (CA)n Simple_repeat Simple_repeat 2 79 0 494 321 0 22 chr6 12462802 12462986 -176816568 + (CA)n Simple_repeat Simple_repeat 1 180 0 439 217 39 39 chr6 12464432 12464561 -176814993 + MIR SINE MIR 86 214 -48 384 265 20 61 chr6 12467670 12467866 -176811688 + L1MC4 LINE L1 7854 8041 -1 2376 154 32 17 chr6 12470432 12470841 -176808713 + MSTB LTR MaLR 10 424 -2 243 0 0 0 chr6 12471635 12471662 -176807892 + (TC)n Simple_repeat Simple_repeat 2 28 0 189 74 0 0 chr6 12471661 12471688 -176807866 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 2330 105 3 0 chr6 12472249 12472554 -176807000 - AluSx SINE Alu -6 306 1 307 314 39 44 chr6 12472626 12472830 -176806724 - L2 LINE L2 -1000 2314 2112 1065 148 37 42 chr6 12472831 12473047 -176806507 - MER20 DNA MER1_type 0 219 5 987 298 127 53 chr6 12474892 12476212 -176803342 - L2 LINE L2 0 3313 1893 1703 182 10 3 chr6 12477317 12477613 -176801941 - AluJb SINE Alu -14 298 1 540 313 58 29 chr6 12478119 12478633 -176800921 - L1MEc LINE L1 -4614 1782 1254 236 247 65 65 chr6 12478633 12478787 -176800767 - L1MEc LINE L1 -5960 245 92 280 297 95 40 chr6 12479143 12479291 -176800263 - MLT2E LTR ERVL -425 203 48 245 406 0 0 chr6 12479485 12479586 -176799968 - MIR SINE MIR -78 130 30 1066 179 200 21 chr6 12482559 12482823 -176796731 + AluSx SINE Alu 1 307 0 677 98 59 0 chr6 12482950 12483052 -176796502 + L1MD1 LINE L1 6129 6236 -6 403 242 76 8 chr6 12483242 12483374 -176796180 + MIR3 SINE MIR 54 194 -14 1637 186 88 77 chr6 12483955 12484412 -176795142 + MLT1C LTR MaLR 6 467 0 2439 25 7 0 chr6 12484909 12485193 -176794361 + L1PA4 LINE L1 5867 6152 -3 22 0 0 0 chr6 12485193 12485215 -176794339 + AT_rich Low_complexity Low_complexity 1 22 0 2075 221 33 35 chr6 12486116 12486601 -176792953 + MLT1D LTR MaLR 7 490 -15 1186 260 54 59 chr6 12486716 12487313 -176792241 + L2 LINE L2 1860 2453 -861 711 326 120 13 chr6 12487392 12487904 -176791650 + L2 LINE L2 2747 3301 -12 367 272 33 82 chr6 12491158 12491342 -176788212 + MIR SINE MIR 46 220 -42 207 0 0 0 chr6 12491359 12491382 -176788172 + (A)n Simple_repeat Simple_repeat 1 23 0 1408 81 0 0 chr6 12491784 12491958 -176787596 - AluSp SINE Alu -5 308 135 1421 151 163 4 chr6 12493555 12493800 -176785754 + AluJb SINE Alu 2 285 -17 516 230 32 8 chr6 12495919 12496045 -176783509 + MER5A DNA MER1_type 25 153 -36 715 139 197 0 chr6 12496068 12496205 -176783349 + L1PA15 LINE L1 6001 6164 -1 278 156 172 115 chr6 12496369 12496491 -176783063 - MIR SINE MIR -11 251 123 668 176 0 29 chr6 12496662 12496798 -176782756 - MER5B DNA MER1_type -44 134 3 2189 114 69 32 chr6 12498099 12498475 -176781079 + MLT1B LTR MaLR 1 390 0 307 304 11 0 chr6 12498940 12499032 -176780522 - L3b LINE CR1 -84 1499 1407 192 269 19 0 chr6 12499545 12499597 -176779957 - L2 LINE L2 0 3272 3220 201 196 0 0 chr6 12499677 12499723 -176779831 + GA-rich Low_complexity Low_complexity 1 46 0 805 281 88 16 chr6 12499756 12500119 -176779435 - LTR16A LTR ERVL -3 447 59 363 256 141 16 chr6 12500178 12500299 -176779255 - MIR SINE MIR -125 137 2 2094 105 3 14 chr6 12500491 12500805 -176778749 + AluSg SINE Alu 1 311 0 433 328 29 0 chr6 12501777 12501948 -176777606 - MIR SINE MIR -39 223 48 189 0 0 0 chr6 12503711 12503732 -176775822 + (TG)n Simple_repeat Simple_repeat 2 22 0 198 103 0 0 chr6 12503918 12503947 -176775607 + (TG)n Simple_repeat Simple_repeat 1 29 0 1947 185 14 11 chr6 12506433 12506795 -176772759 - MLT1A1 LTR MaLR -2 363 1 488 269 51 56 chr6 12506877 12507093 -176772461 - MIR SINE MIR 0 262 48 2195 158 42 37 chr6 12507093 12507636 -176771918 + MLT2A2 LTR ERVL 1 554 0 2686 20 0 7 chr6 12507726 12508022 -176771532 - AluY SINE Alu -17 294 1 25 31 0 0 chr6 12508359 12508391 -176771163 + AT_rich Low_complexity Low_complexity 1 32 0 36 91 0 0 chr6 12508436 12508535 -176771019 + AT_rich Low_complexity Low_complexity 1 99 0 21 36 0 0 chr6 12508640 12508668 -176770886 + AT_rich Low_complexity Low_complexity 1 28 0 358 283 116 47 chr6 12509129 12509405 -176770149 - L2 LINE L2 0 3313 3019 440 322 89 46 chr6 12509435 12510043 -176769511 + L2 LINE L2 2067 2700 -614 277 290 0 0 chr6 12510512 12510574 -176768980 + L2 LINE L2 3242 3303 -10 5590 131 26 46 chr6 12510576 12511442 -176768112 + L1MA8 LINE L1 5296 6139 -152 1797 176 17 0 chr6 12511442 12511737 -176767817 + AluJb SINE Alu 1 300 -12 5590 131 26 46 chr6 12511737 12511884 -176767670 + L1MA8 LINE L1 6139 6288 -3 218 296 91 23 chr6 12512032 12512120 -176767434 - L2 LINE L2 -64 3208 3115 235 231 176 33 chr6 12512990 12513081 -176766473 + LTR33 LTR ERVL 418 521 0 180 337 137 0 chr6 12513088 12513183 -176766371 + L2 LINE L2 3154 3261 -11 7253 152 17 0 chr6 12513189 12515349 -176764205 + LTR21B-int LTR ERV1 3071 5333 -1196 734 254 0 11 chr6 12515674 12515855 -176763699 + LTR21B-int LTR ERV1 4953 5131 -455 2076 304 32 36 chr6 12516670 12517733 -176761821 + LTR21B-int LTR ERV1 5471 6529 0 1901 164 8 106 chr6 12517733 12518215 -176761339 + LTR21B LTR ERV1 1 435 -3 4558 199 66 66 chr6 12518242 12518903 -176760651 - L1MDb LINE L1 -3873 2714 2054 2772 32 0 3 chr6 12518903 12519215 -176760339 + AluY SINE Alu 1 311 0 4558 199 66 66 chr6 12519215 12520516 -176759038 - L1MDb LINE L1 -4533 2054 750 521 191 12 0 chr6 12520516 12520600 -176758954 - MER20 DNA MER1_type -134 85 1 2250 113 0 0 chr6 12520987 12521296 -176758258 + AluSg SINE Alu 1 309 -1 1989 113 11 11 chr6 12522817 12523099 -176756455 + AluSx SINE Alu 1 282 -30 288 0 0 0 chr6 12523103 12523135 -176756419 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 521 338 0 15 chr6 12523135 12523339 -176756215 + MIR SINE MIR 60 260 -2 27 62 0 0 chr6 12523814 12523862 -176755692 + AT_rich Low_complexity Low_complexity 1 48 0 450 330 29 38 chr6 12523879 12524118 -176755436 - MIR SINE MIR 0 262 26 302 224 0 0 chr6 12524122 12524189 -176755365 + L1MC2 LINE L1 6259 6325 -19 22 0 0 0 chr6 12524192 12524214 -176755340 + AT_rich Low_complexity Low_complexity 1 22 0 350 175 0 0 chr6 12524376 12524439 -176755115 + MIR SINE MIR 199 261 -1 225 154 0 0 chr6 12524439 12524478 -176755076 + (CACCAT)n Simple_repeat Simple_repeat 4 42 0 901 184 54 11 chr6 12525298 12525483 -176754071 + MER3 DNA MER1_type 1 193 -16 525 250 10 0 chr6 12525484 12525588 -176753966 + MER81 DNA DNA 10 114 0 2128 101 0 11 chr6 12525820 12526106 -176753448 + AluSq SINE Alu 2 284 -29 2666 206 41 52 chr6 12526107 12526214 -176753340 - L1ME1 LINE L1 -108 6058 5951 1426 169 0 114 chr6 12526214 12526564 -176752990 - AluJo SINE Alu -2 310 1 2666 206 41 52 chr6 12526564 12526841 -176752713 - L1ME1 LINE L1 -215 5951 5672 696 188 0 39 chr6 12526841 12526969 -176752585 - FLAM_A SINE Alu -10 123 1 2666 206 41 52 chr6 12526969 12527257 -176752297 - L1ME1 LINE L1 -494 5672 5391 1811 181 3 7 chr6 12527257 12527555 -176751999 + AluJb SINE Alu 1 297 -15 2666 206 41 52 chr6 12527555 12527617 -176751937 - L1ME1 LINE L1 -775 5391 5330 338 131 16 16 chr6 12527620 12527681 -176751873 - AluJ/FRAM SINE Alu -10 292 232 396 103 35 0 chr6 12527686 12527744 -176751810 - MER41D LTR ERV1 0 557 498 288 0 0 0 chr6 12527746 12527778 -176751776 + (CA)n Simple_repeat Simple_repeat 2 33 0 325 238 12 12 chr6 12527778 12527862 -176751692 - L1MC4 LINE L1 -1347 6695 6612 228 188 0 43 chr6 12527879 12527948 -176751606 - L1MC4 LINE L1 -1340 6702 6637 317 229 14 0 chr6 12528721 12528791 -176750763 - Charlie7 DNA MER1_type -17 2595 2525 373 199 12 149 chr6 12529236 12529306 -176750248 - MER5A DNA MER1_type -1 188 151 1627 172 12 53 chr6 12529306 12529625 -176749929 + AluJo SINE Alu 1 306 -6 373 199 12 149 chr6 12529625 12529715 -176749839 - MER5A DNA MER1_type -38 151 50 3194 108 69 54 chr6 12531210 12531801 -176747753 + MER4A LTR ERV1 1 600 0 446 274 8 8 chr6 12534165 12534289 -176745265 + MIR SINE MIR 29 152 -110 2317 154 65 0 chr6 12534414 12534816 -176744738 + MSTA LTR MaLR 1 428 0 4547 187 23 14 chr6 12534982 12535098 -176744456 + L1MB5 LINE L1 5169 5282 -892 2339 84 7 10 chr6 12535098 12535391 -176744163 + AluSc SINE Alu 1 294 -15 378 0 0 0 chr6 12535391 12535433 -176744121 + (CA)n Simple_repeat Simple_repeat 1 42 0 2339 84 7 10 chr6 12535433 12535449 -176744105 + AluSc SINE Alu 294 309 0 4547 187 23 14 chr6 12535449 12535462 -176744092 + L1MB5 LINE L1 5282 5293 -881 252 0 0 0 chr6 12535462 12535490 -176744064 + (CAA)n Simple_repeat Simple_repeat 3 30 0 4547 187 23 14 chr6 12535490 12536351 -176743203 + L1MB5 LINE L1 5293 6165 -9 211 195 0 0 chr6 12538460 12538501 -176741053 - L2 LINE L2 -2 3311 3271 26 30 0 0 chr6 12538658 12538691 -176740863 + AT_rich Low_complexity Low_complexity 1 33 0 240 262 16 0 chr6 12540302 12540363 -176739191 - MER5A DNA MER1_type 0 189 128 232 269 201 13 chr6 12540464 12540613 -176738941 + MIR SINE MIR 36 212 -50 2486 65 0 10 chr6 12543196 12543503 -176736051 - AluSp SINE Alu -9 304 1 28 0 0 0 chr6 12543905 12543933 -176735621 + AT_rich Low_complexity Low_complexity 1 28 0 886 322 65 28 chr6 12545253 12545455 -176734099 - ERVL LTR ERVL -2422 3342 3149 1922 153 20 0 chr6 12545455 12545755 -176733799 - AluSx SINE Alu -4 308 3 886 322 65 28 chr6 12545755 12545984 -176733570 - ERVL LTR ERVL -2615 3149 2895 516 221 92 46 chr6 12546004 12546199 -176733355 + MLT1I LTR MaLR 206 409 0 404 270 51 15 chr6 12546508 12546645 -176732909 + MLT1L LTR MaLR 135 276 -339 22 0 0 0 chr6 12599983 12600005 -176679549 + AT_rich Low_complexity Low_complexity 1 22 0 388 311 17 0 chr6 12600174 12600293 -176679261 + LTR16B LTR ERVL 104 224 -240 * 971 153 18 20 chr6 12600272 12600545 -176679009 + MER2 DNA MER2_type 23 345 0 203 128 77 0 chr6 12600769 12600808 -176678746 + L2 LINE L2 2780 2821 -493 281 365 0 9 chr6 12601039 12601146 -176678408 + MIR SINE MIR 71 176 -86 245 302 198 0 chr6 12601148 12601244 -176678310 - L2 LINE L2 -2 3311 3197 291 276 16 87 chr6 12601437 12601622 -176677932 + L2 LINE L2 1745 1916 -1398 1073 138 147 22 chr6 12601626 12601816 -176677738 - MLT1B LTR MaLR 0 390 225 2098 98 4 0 chr6 12601816 12602092 -176677462 + AluSg SINE Alu 29 305 -5 1073 138 147 22 chr6 12602092 12602172 -176677382 - MLT1B LTR MaLR -165 225 1 180 387 86 39 chr6 12602194 12602450 -176677104 + L2 LINE L2 1941 2208 -1106 905 186 30 30 chr6 12603028 12603195 -176676359 + L1PB4 LINE L1 5990 6156 0 4106 131 20 30 chr6 12603669 12603917 -176675637 - L1MA4 LINE L1 -5 6295 6046 231 36 0 0 chr6 12603917 12603945 -176675609 + (TA)n Simple_repeat Simple_repeat 2 29 0 4106 131 20 30 chr6 12603945 12604303 -176675251 - L1MA4 LINE L1 -254 6046 5694 1502 155 7 81 chr6 12604303 12604613 -176674941 + AluJo SINE Alu 14 300 -12 4106 131 20 30 chr6 12604613 12604701 -176674853 - L1MA4 LINE L1 -606 5694 5607 1914 210 87 0 chr6 12604701 12605186 -176674368 - L1M2b LINE L1 -6681 528 2 866 174 0 0 chr6 12605340 12605472 -176674082 + FLAM_C SINE Alu 1 132 -1 189 0 0 0 chr6 12606826 12606847 -176672707 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 301 254 0 0 chr6 12607008 12607071 -176672483 - L2 LINE L2 -1 3271 3209 180 189 27 0 chr6 12607225 12607262 -176672292 - MIR SINE MIR -147 115 78 315 273 91 10 chr6 12607973 12608072 -176671482 - L2 LINE L2 -19 3253 3147 1020 119 150 10 chr6 12608636 12608829 -176670725 - MSTB1 LTR MaLR -23 409 190 3992 122 72 26 chr6 12608918 12609658 -176669896 - LTR1 LTR ERV1 0 785 12 206 292 0 0 chr6 12610191 12610239 -176669315 - L2 LINE L2 -11 3261 3214 2398 95 0 0 chr6 12610794 12611090 -176668464 - AluSc SINE Alu -13 296 1 2211 151 33 15 chr6 12611283 12611674 -176667880 - MSTB LTR MaLR -20 406 9 605 301 62 10 chr6 12613211 12613404 -176666150 + MIR3 SINE MIR 2 204 -4 302 321 36 27 chr6 12613942 12614054 -176665500 - MIR SINE MIR -77 131 19 186 71 0 0 chr6 12614067 12614095 -176665459 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1996 128 0 4 chr6 12614098 12614379 -176665175 - AluSx SINE Alu -32 280 1 32918 108 11 57 chr6 12614489 12620939 -176658615 + L1PA7 LINE L1 12 6154 0 346 297 27 0 chr6 12621084 12621195 -176658359 + L2 LINE L2 3198 3311 -2 2099 140 68 3 chr6 12622719 12623055 -176656499 - MER46B DNA MER2_type 0 236 4 2758 116 6 3 chr6 12624660 12625023 -176654531 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr6 12625171 12625192 -176654362 + AT_rich Low_complexity Low_complexity 1 21 0 506 312 48 48 chr6 12625727 12625916 -176653638 + MIR3 SINE MIR 20 208 0 410 362 99 18 chr6 12626533 12626867 -176652687 + L2 LINE L2 2397 2757 -557 234 307 80 0 chr6 12627484 12627572 -176651982 + L2 LINE L2 3214 3308 -5 180 404 10 0 chr6 12627917 12628016 -176651538 + L3 LINE CR1 363 462 -1115 709 319 181 33 chr6 12628070 12628789 -176650765 + L3 LINE CR1 557 1381 -196 1074 238 91 81 chr6 12628930 12629447 -176650107 + MLT1H LTR MaLR 13 534 -15 402 188 0 0 chr6 12631002 12631103 -176648451 + (TA)n Simple_repeat Simple_repeat 1 101 0 1064 164 123 0 chr6 12632051 12632246 -176647308 + MER20 DNA MER1_type 1 219 0 369 0 0 0 chr6 12632797 12632838 -176646716 + (TG)n Simple_repeat Simple_repeat 1 41 0 241 238 155 0 chr6 12633252 12633336 -176646218 + MIR SINE MIR 85 181 -81 627 288 28 43 chr6 12633422 12633748 -176645806 + HAL1 LINE L1 1404 1724 -783 346 231 64 89 chr6 12633968 12634171 -176645383 + HAL1b LINE L1 714 911 -437 304 273 103 26 chr6 12634239 12634433 -176645121 + L1MC4a LINE L1 4123 4331 -1815 229 330 38 0 chr6 12634562 12634668 -176644886 + L1MC4a LINE L1 4501 4610 -1536 1282 283 105 46 chr6 12634678 12635931 -176643623 + L1MC4a LINE L1 4691 5445 -743 3436 151 20 10 chr6 12635982 12636571 -176642983 + L1MB4 LINE L1 5586 6180 0 473 288 142 26 chr6 12637225 12637458 -176642096 - L3 LINE CR1 -107 1470 1211 1582 229 73 46 chr6 12637684 12638224 -176641330 + MLT1F1 LTR MaLR 1 564 -3 1886 149 0 0 chr6 12638363 12638631 -176640923 + AluSx SINE Alu 29 296 -16 2317 104 0 13 chr6 12639354 12639670 -176639884 + AluSx SINE Alu 1 312 0 954 189 0 6 chr6 12640294 12640458 -176639096 + FRAM SINE Alu 2 164 -2 22 0 0 0 chr6 12640716 12640738 -176638816 + AT_rich Low_complexity Low_complexity 1 22 0 4973 166 30 9 chr6 12640896 12641856 -176637698 - L1MB2 LINE L1 -40 6131 5158 330 169 0 0 chr6 12641853 12641912 -176637642 + L1MB2 LINE L1 5088 5146 -1000 * 5642 40 0 9 chr6 12642136 12642781 -176636773 + L1PA5 LINE L1 5516 6154 0 609 175 53 0 chr6 12643225 12643339 -176636215 - Zaphod DNA AcHobo 0 4031 3912 1472 251 9 0 chr6 12643340 12643659 -176635895 - MER82 DNA MER2_type 0 653 332 * 3594 127 5 2 chr6 12643658 12644167 -176635387 + MER1A DNA MER1_type 17 529 0 1287 214 109 3 chr6 12644174 12644468 -176635086 - MER82 DNA MER2_type -328 325 1 1267 186 33 60 chr6 12644468 12644800 -176634754 - Zaphod DNA AcHobo -119 3912 3590 2503 224 64 58 chr6 12644795 12645356 -176634198 - Zaphod DNA AcHobo -3045 986 417 2175 117 0 0 chr6 12645356 12645646 -176633908 + AluSx SINE Alu 1 290 -22 2503 224 64 58 chr6 12645646 12645938 -176633616 - Zaphod DNA AcHobo -3614 417 128 601 223 205 5 chr6 12646483 12646698 -176632856 - MIR SINE MIR 0 262 5 2464 63 0 13 chr6 12646919 12647221 -176632333 - AluY SINE Alu -13 298 1 251 236 45 34 chr6 12647368 12647457 -176632097 - MIR SINE MIR -138 124 35 2443 111 22 33 chr6 12649066 12649434 -176630120 - THE1B LTR MaLR 0 364 1 570 128 0 0 chr6 12649488 12649582 -176629972 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 21 57 0 0 chr6 12649698 12649733 -176629821 + AT_rich Low_complexity Low_complexity 1 35 0 229 164 27 0 chr6 12650276 12650349 -176629205 + (TA)n Simple_repeat Simple_repeat 1 75 0 23 101 0 0 chr6 12650731 12650810 -176628744 + AT_rich Low_complexity Low_complexity 1 79 0 725 219 112 50 chr6 12651085 12651423 -176628131 - HAL1 LINE L1 -163 2344 1986 443 269 36 36 chr6 12651448 12651615 -176627939 - L2 LINE L2 -1 3312 3146 540 214 0 0 chr6 12651839 12651942 -176627612 + FLAM_C SINE Alu 40 142 -1 210 296 16 64 chr6 12651957 12652082 -176627472 - L2 LINE L2 -338 2976 2858 809 140 0 28 chr6 12653849 12654027 -176625527 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 930 248 36 0 chr6 12655371 12655649 -176623905 - L1ME3A LINE L1 -5 6165 5878 258 32 0 0 chr6 12656889 12656920 -176622634 + (TG)n Simple_repeat Simple_repeat 1 31 0 364 341 34 11 chr6 12657545 12657717 -176621837 - L2 LINE L2 -564 2750 2572 2381 101 22 27 chr6 12657717 12658083 -176621471 - THE1B LTR MaLR 0 364 1 607 168 0 132 chr6 12658139 12658329 -176621225 - MER3 DNA MER1_type -3 206 42 696 274 39 55 chr6 12658718 12659025 -176620529 - LTR16B LTR ERVL 0 464 163 1801 141 25 91 chr6 12659031 12659258 -176620296 + THE1C LTR MaLR 5 196 -179 12597 51 0 0 chr6 12659258 12661616 -176617938 + L1PA6 LINE L1 3793 6153 -1 1801 141 25 91 chr6 12661616 12661785 -176617769 + THE1C LTR MaLR 196 375 0 411 270 22 7 chr6 12661796 12661933 -176617621 - LTR16B LTR ERVL -323 141 3 28 91 0 0 chr6 12661978 12662055 -176617499 + AT_rich Low_complexity Low_complexity 1 77 0 9779 213 57 23 chr6 12662171 12665208 -176614346 + L1MDa LINE L1 14 3171 -3369 2454 220 20 2 chr6 12665208 12665718 -176613836 + LTR53 LTR ERVL 1 519 0 9779 213 57 23 chr6 12665718 12665878 -176613676 + L1MDa LINE L1 3171 3324 -3216 2380 100 0 0 chr6 12665996 12666305 -176613249 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr6 12666817 12666846 -176612708 + AT_rich Low_complexity Low_complexity 1 29 0 269 281 25 0 chr6 12667052 12667173 -176612381 + (TA)n Simple_repeat Simple_repeat 1 124 0 411 262 140 26 chr6 12667999 12668228 -176611326 + L1ME4a LINE L1 5852 6106 -15 480 283 68 11 chr6 12668657 12668837 -176610717 + MIR SINE MIR 7 189 -68 426 310 134 9 chr6 12668979 12669211 -176610343 - MLT1L LTR MaLR -6 609 349 2882 200 19 23 chr6 12669358 12670007 -176609547 - L1MB8 LINE L1 0 6178 5533 823 163 20 48 chr6 12670014 12670265 -176609289 - L1M4c LINE L1 -3425 3532 3182 370 197 40 0 chr6 12670266 12670342 -176609212 + Tigger5 DNA MER2_type 1 79 -2244 336 231 0 0 chr6 12670345 12670410 -176609144 - Tigger5 DNA MER2_type -7 2316 2252 400 169 0 0 chr6 12670414 12670479 -176609075 + Tigger5 DNA MER2_type 2259 2323 0 707 231 79 43 chr6 12670479 12671011 -176608543 - L1M4c LINE L1 -3775 3182 2631 3585 227 87 18 chr6 12671028 12672049 -176607505 - L1M4c LINE L1 -5187 1672 581 10328 200 48 27 chr6 12672052 12673017 -176606537 - L1MC1 LINE L1 -192 6421 5478 2418 50 7 10 chr6 12673017 12673320 -176606234 - AluY SINE Alu -9 302 1 10328 200 48 27 chr6 12673320 12676756 -176602798 - L1MC1 LINE L1 -1135 5478 2116 2098 80 11 7 chr6 12676756 12677032 -176602522 - AluSc SINE Alu -2 307 31 10328 200 48 27 chr6 12677032 12677160 -176602394 - L1MC1 LINE L1 -4497 2116 1992 373 147 0 0 chr6 12677160 12677228 -176602326 - L1PB4 LINE L1 -3 6153 6086 10328 200 48 27 chr6 12677228 12678959 -176600595 - L1MC1 LINE L1 -4621 1992 27 1197 295 45 65 chr6 12678971 12680348 -176599206 - L1MEc LINE L1 -4796 1600 251 462 305 40 11 chr6 12680368 12680542 -176599012 - MLT1J LTR MaLR -326 185 7 2777 7 0 0 chr6 12680812 12681112 -176598442 + AluYa5 SINE Alu 1 300 -11 1417 241 21 48 chr6 12681312 12681786 -176597768 + L1ME2 LINE L1 5676 6136 -28 332 311 66 20 chr6 12681844 12682040 -176597514 + L1MC4 LINE L1 7836 8040 -2 6261 94 5 0 chr6 12682357 12683313 -176596241 - L1PA14 LINE L1 0 6161 5213 878 190 22 0 chr6 12683313 12683492 -176596062 - L1PA14 LINE L1 -1516 4630 4448 5760 39 3 0 chr6 12684283 12684980 -176594574 - L1PA5 LINE L1 0 6154 5456 407 271 107 77 chr6 12686115 12686594 -176592960 + MLT1K LTR MaLR 66 558 -30 755 160 0 0 chr6 12686926 12687045 -176592509 - AluJb SINE Alu 0 312 194 436 320 23 6 chr6 12687142 12687317 -176592237 + MER5A DNA MER1_type 6 183 -6 339 330 125 0 chr6 12687594 12687706 -176591848 + MER5B DNA MER1_type 1 126 -52 2063 135 47 84 chr6 12688054 12688295 -176591259 - Tigger2a DNA MER2_type -2274 434 216 1746 156 30 0 chr6 12688295 12688564 -176590990 + AluSx SINE Alu 6 282 -30 2063 135 47 84 chr6 12688564 12688773 -176590781 - Tigger2a DNA MER2_type -2492 216 1 2083 159 17 0 chr6 12688779 12689138 -176590416 + MER47A DNA MER2_type 1 365 -1 369 243 122 56 chr6 12689747 12689961 -176589593 + L1ME LINE L1 5521 5748 -373 2039 121 47 9 chr6 12689984 12690306 -176589248 + MER1B DNA MER1_type 1 334 -5 251 200 57 0 chr6 12690526 12690596 -176588958 + HAL1b LINE L1 1257 1330 -18 1330 173 46 0 chr6 12691633 12691870 -176587684 + Tigger7 DNA MER2_type 9 256 -477 419 102 0 0 chr6 12691870 12691929 -176587625 - MER1B DNA MER1_type 0 333 275 * 1106 107 12 6 chr6 12691928 12692096 -176587458 - MER1B DNA MER1_type -126 171 3 479 184 11 0 chr6 12692115 12692202 -176587352 + Tigger7 DNA MER2_type 2392 2479 -8 28 48 0 0 chr6 12692324 12692366 -176587188 + AT_rich Low_complexity Low_complexity 1 42 0 297 276 72 46 chr6 12692453 12692605 -176586949 + L2 LINE L2 3152 3307 -6 2184 124 0 0 chr6 12693079 12693378 -176586176 - AluSg SINE Alu -11 299 1 356 171 219 38 chr6 12693537 12693642 -176585912 - L2 LINE L2 0 3313 3190 1924 142 6 31 chr6 12693840 12694157 -176585397 - AluJb SINE Alu -3 309 1 527 225 8 0 chr6 12694508 12694637 -176584917 - LTR16C LTR ERVL 0 491 362 568 292 120 25 chr6 12694793 12695034 -176584520 + MLT1H1 LTR MaLR 32 249 -306 2282 108 0 19 chr6 12695034 12695349 -176584205 + AluSp SINE Alu 1 309 -4 568 292 120 25 chr6 12695349 12695539 -176584015 + MLT1H1 LTR MaLR 249 504 -51 475 290 27 22 chr6 12695587 12695770 -176583784 - LTR16C LTR ERVL -266 225 42 309 51 0 0 chr6 12696039 12696078 -176583476 + (TG)n Simple_repeat Simple_repeat 2 40 0 1617 102 90 71 chr6 12696970 12697324 -176582230 + MER46B DNA MER2_type 1 236 0 347 316 0 0 chr6 12697662 12697760 -176581794 + MIR SINE MIR 81 178 -84 962 181 0 12 chr6 12697930 12698101 -176581453 - FRAM SINE Alu -8 168 1 195 253 274 68 chr6 12698921 12699067 -176580487 + MIR3 SINE MIR 33 208 0 285 156 0 0 chr6 12699111 12699156 -176580398 - MER69 DNA AcHobo -4 2522 2478 606 200 38 27 chr6 12699159 12699344 -176580210 - MER53 DNA DNA 0 189 3 293 216 11 0 chr6 12699362 12699450 -176580104 - MER69 DNA AcHobo -58 2468 2380 222 37 0 0 chr6 12700754 12700781 -176578773 + (TG)n Simple_repeat Simple_repeat 1 27 0 327 333 52 20 chr6 12701911 12702306 -176577248 + L1ME3A LINE L1 5524 5936 -234 2244 99 0 13 chr6 12702371 12702674 -176576880 + AluSc SINE Alu 1 299 -10 21 0 0 0 chr6 12702682 12702703 -176576851 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 12702775 12702806 -176576748 + AT_rich Low_complexity Low_complexity 1 31 0 188 35 35 0 chr6 12702855 12702884 -176576670 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 610 291 93 39 chr6 12702884 12703248 -176576306 + Tigger8 DNA MER2_type 273 656 -10 2199 110 7 3 chr6 12703823 12704122 -176575432 + AluSx SINE Alu 3 302 -10 188 23 47 47 chr6 12704131 12704174 -176575380 + (GAGAA)n Simple_repeat Simple_repeat 3 45 0 819 124 31 0 chr6 12704183 12704312 -176575242 + AluSg/x SINE Alu 174 306 -4 678 159 23 23 chr6 12704332 12704508 -176575046 + GA-rich Low_complexity Low_complexity 3 178 0 481 75 0 0 chr6 12706168 12706235 -176573319 + AluY SINE Alu 193 259 -52 297 0 0 0 chr6 12706502 12706535 -176573019 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 1274 156 135 8 chr6 12706540 12706677 -176572877 - AluJo SINE Alu -33 279 161 204 40 0 0 chr6 12706677 12706702 -176572852 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1274 156 135 8 chr6 12706702 12706808 -176572746 - AluJo SINE Alu -151 161 5 261 57 0 0 chr6 12707028 12707063 -176572491 + (CA)n Simple_repeat Simple_repeat 2 36 0 285 75 0 0 chr6 12707063 12707103 -176572451 + (GA)n Simple_repeat Simple_repeat 1 40 0 2206 102 10 0 chr6 12707497 12707792 -176571762 + AluSx SINE Alu 1 298 -14 1502 147 25 159 chr6 12707963 12708359 -176571195 + Charlie1b DNA MER1_type 1 297 -2464 2104 115 24 0 chr6 12708359 12708646 -176570908 + AluSx SINE Alu 1 294 -18 1502 147 25 159 chr6 12708646 12708847 -176570707 + Charlie1b DNA MER1_type 297 523 0 335 250 50 71 chr6 12709260 12709400 -176570154 + MER5A DNA MER1_type 35 171 -18 719 78 78 37 chr6 12709832 12710051 -176569503 - L1MA1 LINE L1 0 6302 6019 7525 125 130 58 chr6 12710436 12712017 -176567537 + pTR5 LTR ERV1 743 2438 0 2224 125 0 0 chr6 12713290 12713595 -176565959 + AluSx SINE Alu 1 305 -7 23 78 0 0 chr6 12713664 12713715 -176565839 + AT_rich Low_complexity Low_complexity 1 51 0 678 167 0 0 chr6 12714265 12714397 -176565157 + (CCCTA)n Simple_repeat Simple_repeat 2 133 0 1900 102 0 0 chr6 12714421 12714666 -176564888 - AluSg SINE Alu -26 284 40 270 318 39 16 chr6 12715230 12715359 -176564195 + MIR SINE MIR 85 216 -46 246 32 0 0 chr6 12716552 12716583 -176562971 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr6 12716619 12716643 -176562911 + (A)n Simple_repeat Simple_repeat 1 24 0 465 83 0 0 chr6 12716678 12716738 -176562816 + Alu SINE Alu 2 61 -257 1539 87 10 0 chr6 12716738 12716934 -176562620 + AluSg/x SINE Alu 96 293 -17 589 312 49 40 chr6 12717427 12717754 -176561800 + MLT1I LTR MaLR 72 401 -8 767 309 23 9 chr6 12717852 12718072 -176561482 - MER58A DNA MER1_type 0 224 2 2174 109 0 3 chr6 12718106 12718399 -176561155 + AluSq SINE Alu 1 292 -21 298 180 66 16 chr6 12718425 12718486 -176561068 - MLT1C LTR MaLR -5 462 399 284 101 47 39 chr6 12718492 12718621 -176560933 + (TTATA)n Simple_repeat Simple_repeat 5 134 0 1287 210 96 18 chr6 12718654 12718988 -176560566 - MLT1C LTR MaLR -63 404 45 1625 164 7 7 chr6 12719110 12719384 -176560170 - L1PB3 LINE L1 0 6154 5881 2206 101 10 3 chr6 12720478 12720774 -176558780 + AluSq SINE Alu 1 298 -15 358 280 23 30 chr6 12720790 12720922 -176558632 - MLT1I LTR MaLR -33 376 246 317 189 11 105 chr6 12720994 12721089 -176558465 - MLT1J LTR MaLR -325 186 101 21 57 0 0 chr6 12722155 12722190 -176557364 + AT_rich Low_complexity Low_complexity 1 35 0 365 314 70 32 chr6 12722292 12722532 -176557022 - L1ME4a LINE L1 -221 5900 5642 1953 142 3 31 chr6 12722532 12722849 -176556705 + AluJo SINE Alu 1 308 -4 365 314 70 32 chr6 12722849 12722952 -176556602 - L1ME4a LINE L1 -479 5642 5544 27 49 0 0 chr6 12723098 12723139 -176556415 + AT_rich Low_complexity Low_complexity 1 41 0 714 287 124 6 chr6 12723287 12723618 -176555936 - L1ME4a LINE L1 -193 5928 5559 32 26 0 0 chr6 12723699 12723738 -176555816 + AT_rich Low_complexity Low_complexity 1 39 0 375 262 119 57 chr6 12723906 12724150 -176555404 - HAL1b LINE L1 -684 664 406 877 259 50 61 chr6 12724157 12724566 -176554988 + MLT2B2 LTR ERVL 1 364 -50 336 24 0 0 chr6 12724568 12724609 -176554945 + (CA)n Simple_repeat Simple_repeat 2 42 0 1602 157 5 129 chr6 12725064 12725458 -176554096 + MER7A DNA MER2_type 4 346 0 3251 133 4 24 chr6 12725589 12726132 -176553422 + L1MA9 LINE L1 5781 6312 0 291 211 84 0 chr6 12726478 12726549 -176553005 - L2 LINE L2 -1 3312 3236 2081 179 19 16 chr6 12727225 12727589 -176551965 + MLT1A1 LTR MaLR 1 365 0 1533 225 17 28 chr6 12728486 12728846 -176550708 - MLT1A2 LTR MaLR 0 374 19 223 28 56 0 chr6 12729639 12729675 -176549879 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 2127 101 0 14 chr6 12730455 12730752 -176548802 + AluSx SINE Alu 1 293 -19 23 33 0 0 chr6 12731673 12731703 -176547851 + AT_rich Low_complexity Low_complexity 1 30 0 228 368 0 0 chr6 12731750 12731818 -176547736 + MIR3 SINE MIR 104 171 -37 921 208 20 9 chr6 12731845 12732113 -176547441 + L1MC4a LINE L1 6422 6618 -1190 308 275 0 22 chr6 12732114 12732205 -176547349 + L1MC4 LINE L1 6615 6703 -1339 237 250 0 0 chr6 12732205 12732265 -176547289 + (TA)n Simple_repeat Simple_repeat 2 61 0 4231 239 73 14 chr6 12732281 12733410 -176546144 + L1MC4a LINE L1 6605 7800 -8 208 301 0 55 chr6 12733465 12733538 -176546016 - L2 LINE L2 -3 3310 3242 432 0 0 0 chr6 12733542 12733590 -176545964 + (CA)n Simple_repeat Simple_repeat 2 49 0 511 305 126 40 chr6 12733706 12734080 -176545474 + L1ME4a LINE L1 4547 4952 -1194 4649 133 10 10 chr6 12734240 12734942 -176544612 - L1PA16 LINE L1 0 6166 5465 474 271 173 29 chr6 12735168 12735742 -176543812 + L1ME4a LINE L1 5304 5973 -148 336 312 128 7 chr6 12736542 12736824 -176542730 + L2 LINE L2 2422 2737 -577 642 282 129 58 chr6 12736872 12737305 -176542249 + L2 LINE L2 2849 3312 -1 890 296 97 42 chr6 12737754 12738075 -176541479 + L2 LINE L2 2570 2872 -441 2659 174 48 26 chr6 12738075 12738622 -176540932 + MER89 LTR ERV1 1 559 0 890 296 97 42 chr6 12738622 12739000 -176540554 + L2 LINE L2 2872 3311 -2 1937 201 10 48 chr6 12739472 12739788 -176539766 - MLT2C1 LTR ERVL 0 397 99 2173 95 0 24 chr6 12739788 12740082 -176539472 + AluSq SINE Alu 1 287 -26 1937 201 10 48 chr6 12740082 12740178 -176539376 - MLT2C1 LTR ERVL -298 99 1 329 294 139 16 chr6 12740205 12740527 -176539027 + L2 LINE L2 2695 3044 -269 388 127 16 0 chr6 12740649 12740712 -176538842 + MER20 DNA MER1_type 3 66 -153 2559 169 7 18 chr6 12740743 12741198 -176538356 - L1MC1 LINE L1 -3 6330 5881 2860 169 88 2 chr6 12741198 12741392 -176538162 + MLT2B3 LTR ERVL 2 178 -376 219 36 0 0 chr6 12741392 12741420 -176538134 + (TC)n Simple_repeat Simple_repeat 1 28 0 2860 169 88 2 chr6 12741420 12741716 -176537838 + MLT2B3 LTR ERVL 178 534 -20 249 176 14 54 chr6 12741716 12741790 -176537764 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 584 84 11 73 chr6 12741792 12741970 -176537584 + (TCTA)n Simple_repeat Simple_repeat 3 169 0 1493 138 32 0 chr6 12742025 12742271 -176537283 - L1MC1 LINE L1 -447 5886 5633 780 147 66 0 chr6 12742271 12742407 -176537147 + MSTB LTR MaLR 1 145 -281 781 250 246 13 chr6 12742407 12742560 -176536994 - L2 LINE L2 -1283 2031 1915 1690 188 140 11 chr6 12742560 12742911 -176536643 - MSTD LTR MaLR 0 396 1 781 250 246 13 chr6 12742911 12743205 -176536349 - L2 LINE L2 -1399 1915 1480 1478 243 99 57 chr6 12743929 12744476 -176535078 + MLT1E3 LTR MaLR 3 572 -52 343 46 82 8 chr6 12744504 12744560 -176534994 - MLT2A2 LTR ERVL 0 453 402 342 214 98 45 chr6 12744602 12744714 -176534840 + MLT1E1 LTR MaLR 185 302 -352 204 0 0 77 chr6 12744728 12744767 -176534787 + (TA)n Simple_repeat Simple_repeat 2 37 0 1255 95 0 6 chr6 12744767 12744935 -176534619 - MLT2A1 LTR ERVL -58 386 220 2259 108 3 7 chr6 12745234 12745539 -176534015 - AluSq SINE Alu -9 304 1 340 307 64 36 chr6 12746211 12746351 -176533203 - MIR SINE MIR -72 190 47 249 373 0 0 chr6 12746629 12746696 -176532858 - L2 LINE L2 -21 3251 3185 2486 67 0 3 chr6 12747290 12747589 -176531965 + AluSp SINE Alu 5 302 -11 2156 114 0 0 chr6 12748169 12748449 -176531105 - AluSx SINE Alu -32 280 1 186 43 0 0 chr6 12748600 12748623 -176530931 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 991 180 85 2 chr6 12748624 12748814 -176530740 - MER21B LTR ERV1 -355 576 311 1820 151 18 0 chr6 12749111 12749413 -176530141 - AluSx SINE Alu 0 307 1 1563 162 41 4 chr6 12749444 12749715 -176529839 - L1MB2 LINE L1 -3 6168 5888 779 291 13 4 chr6 12749830 12750057 -176529497 - MIR SINE MIR -32 230 2 230 257 50 86 chr6 12752582 12752722 -176526832 - L2 LINE L2 -832 2482 2348 2108 137 0 16 chr6 12752856 12753171 -176526383 + AluSx SINE Alu 1 310 -2 225 65 0 0 chr6 12753805 12753836 -176525718 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2224 132 0 3 chr6 12755114 12755417 -176524137 - AluSx SINE Alu -10 302 1 219 146 0 0 chr6 12755855 12755896 -176523658 + (TG)n Simple_repeat Simple_repeat 2 42 0 954 293 97 0 chr6 12756038 12756369 -176523185 + MER69 DNA AcHobo 26 388 -2138 403 186 8 108 chr6 12756406 12756535 -176523019 + MER69 DNA AcHobo 579 694 -532 2303 233 89 12 chr6 12756565 12757373 -176522181 + MER69 DNA AcHobo 1656 2525 -1 1546 202 50 3 chr6 12757443 12757740 -176521814 + AluJo SINE Alu 1 311 -1 472 317 130 25 chr6 12757741 12758173 -176521381 - L1 LINE L1 -1137 5009 4533 253 189 140 35 chr6 12758771 12758914 -176520640 - L1 LINE L1 -2400 3746 3589 2539 220 73 24 chr6 12759156 12760087 -176519467 - Charlie7 DNA MER1_type -32 2580 1604 1849 245 84 24 chr6 12760168 12761016 -176518538 - Charlie2a DNA MER1_type -46 2816 1918 381 269 39 32 chr6 12761568 12761724 -176517830 + L1ME3A LINE L1 6005 6161 -9 2896 227 92 70 chr6 12761727 12763233 -176516321 - Charlie2a DNA MER1_type -1106 1756 218 1356 105 0 0 chr6 12763691 12763872 -176515682 - AluSg/x SINE Alu -2 310 130 21 0 0 0 chr6 12763880 12763901 -176515653 + AT_rich Low_complexity Low_complexity 1 21 0 358 277 84 60 chr6 12764206 12764321 -176515233 - L1 LINE L1 -2794 3352 3241 2375 87 3 0 chr6 12764321 12764621 -176514933 - AluSc SINE Alu -8 301 1 358 277 84 60 chr6 12764621 12764790 -176514764 - L1 LINE L1 -2905 3241 3061 930 106 75 58 chr6 12764817 12765043 -176514511 - L1MA7 LINE L1 -9 6282 6053 1291 131 0 0 chr6 12765053 12765252 -176514302 - MER41A LTR ERV1 -88 466 268 358 148 0 0 chr6 12765252 12765313 -176514241 - L1MA9 LINE L1 -244 6068 6008 1268 221 74 14 chr6 12766921 12767288 -176512266 - L1MB7 LINE L1 0 6184 5796 189 0 0 0 chr6 12767570 12767591 -176511963 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 2178 109 0 0 chr6 12767606 12767889 -176511665 - AluSq SINE Alu -30 283 1 313 304 52 0 chr6 12768002 12768117 -176511437 + MIR3 SINE MIR 75 195 -13 22 35 0 0 chr6 12768463 12768492 -176511062 + AT_rich Low_complexity Low_complexity 1 29 0 695 180 7 50 chr6 12768833 12768972 -176510582 - FLAM_A SINE Alu 0 133 1 1593 186 10 20 chr6 12769078 12769374 -176510180 + AluJo SINE Alu 1 293 -19 26 64 0 0 chr6 12769381 12769428 -176510126 + AT_rich Low_complexity Low_complexity 1 47 0 21 71 0 0 chr6 12770146 12770188 -176509366 + AT_rich Low_complexity Low_complexity 1 42 0 2727 264 116 56 chr6 12770368 12771078 -176508476 + HAL1 LINE L1 10 676 -1831 2073 124 10 0 chr6 12771078 12771369 -176508185 - AluSx SINE Alu -18 294 1 2727 264 116 56 chr6 12771369 12771943 -176507611 + HAL1 LINE L1 676 1214 -1293 1459 106 0 49 chr6 12771943 12772169 -176507385 + AluY SINE Alu 40 254 -57 2727 264 116 56 chr6 12772169 12772731 -176506823 + HAL1 LINE L1 1214 1967 -540 4136 113 41 23 chr6 12772757 12773022 -176506532 - Tigger3(Golem) DNA MER2_type 0 3029 2770 2333 72 0 31 chr6 12773022 12773341 -176506213 - AluSg SINE Alu -1 309 1 4136 113 41 23 chr6 12773341 12773807 -176505747 - Tigger3(Golem) DNA MER2_type -259 2770 2285 578 204 0 0 chr6 12773807 12773915 -176505639 - Tigger3(Golem) DNA MER2_type -2921 108 1 688 292 71 55 chr6 12773915 12774408 -176505146 + HAL1 LINE L1 2007 2507 0 445 272 61 0 chr6 12774920 12775034 -176504520 + L2 LINE L2 3193 3313 0 231 287 52 59 chr6 12775324 12775460 -176504094 + MIR SINE MIR 32 166 -96 191 286 71 0 chr6 12775924 12775994 -176503560 - MIR3 SINE MIR -27 181 107 1982 131 34 7 chr6 12776312 12776610 -176502944 - AluJb SINE Alu -6 306 1 262 125 62 0 chr6 12777920 12777968 -176501586 - MIR SINE MIR -91 171 121 270 81 0 0 chr6 12779151 12779188 -176500366 + (CA)n Simple_repeat Simple_repeat 2 38 0 375 192 8 17 chr6 12780071 12780191 -176499363 + (TA)n Simple_repeat Simple_repeat 1 119 0 910 118 82 165 chr6 12780217 12780320 -176499234 - MER44D DNA MER2_type -1908 583 473 2174 96 48 0 chr6 12780320 12780611 -176498943 - AluSx SINE Alu -7 305 1 910 118 82 165 chr6 12780611 12780822 -176498732 - MER44D DNA MER2_type -2018 473 25 1161 179 26 15 chr6 12781225 12781498 -176498056 - L1MD3 LINE L1 0 7995 7720 742 299 61 0 chr6 12781617 12781831 -176497723 - MIR SINE MIR -28 234 8 1971 156 3 7 chr6 12782099 12782407 -176497147 - AluJb SINE Alu -4 308 2 198 167 0 0 chr6 12782441 12782477 -176497077 + CT-rich Low_complexity Low_complexity 1 36 0 225 311 131 16 chr6 12782643 12782765 -176496789 + MIR3 SINE MIR 15 150 -58 498 239 128 51 chr6 12782912 12783146 -176496408 - L2 LINE L2 -3 3310 3059 1192 177 39 84 chr6 12783483 12783817 -176495737 + MLT1B LTR MaLR 1 319 -71 380 314 238 0 chr6 12784375 12784547 -176495007 + MIR SINE MIR 48 260 -2 2349 65 3 0 chr6 12784848 12785138 -176494416 - AluY SINE Alu -20 291 1 206 210 43 43 chr6 12786762 12786900 -176492654 + (CCGGG)n Simple_repeat Simple_repeat 5 142 0 195 100 0 0 chr6 12788884 12788914 -176490640 + (CCCCCT)n Simple_repeat Simple_repeat 2 31 0 21 36 0 0 chr6 12789096 12789124 -176490430 + GC_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chr6 12789405 12789432 -176490122 + (TG)n Simple_repeat Simple_repeat 1 27 0 656 220 115 11 chr6 12790766 12790957 -176488597 - MIR SINE MIR -18 244 34 323 258 205 0 chr6 12791062 12791213 -176488341 + MIR SINE MIR 71 252 -10 556 268 131 46 chr6 12791495 12791824 -176487730 - MLT1I LTR MaLR -6 403 47 304 253 13 13 chr6 12792519 12792594 -176486960 + L2 LINE L2 3239 3313 0 225 246 72 0 chr6 12793702 12793771 -176485783 + L2 LINE L2 3240 3313 0 3361 122 98 56 chr6 12793963 12795169 -176484385 - pTR5 LTR ERV1 -143 2295 743 2237 94 26 10 chr6 12797606 12797913 -176481641 - AluSx SINE Alu 0 312 1 2216 102 3 0 chr6 12798399 12798692 -176480862 - AluSq SINE Alu -19 294 1 2255 102 0 3 chr6 12798904 12799197 -176480357 - AluSg SINE Alu -18 292 1 294 294 199 0 chr6 12799257 12799393 -176480161 + MIR SINE MIR 83 245 -17 24 32 0 0 chr6 12800976 12801007 -176478547 + AT_rich Low_complexity Low_complexity 1 31 0 343 173 77 77 chr6 12801573 12801677 -176477877 - MIR3 SINE MIR -7 201 98 679 217 51 0 chr6 12801725 12801882 -176477672 - MIR SINE MIR -34 228 64 2190 127 0 0 chr6 12802485 12802785 -176476769 + AluSq SINE Alu 1 300 -13 908 217 98 0 chr6 12803685 12803888 -176475666 + MER58A DNA MER1_type 2 224 0 1486 245 47 14 chr6 12805419 12805904 -176473650 - L1MB8 LINE L1 0 6178 5678 2065 230 93 30 chr6 12805945 12807740 -176471814 - L1M4 LINE L1 -3783 3174 1206 322 302 77 30 chr6 12808348 12808583 -176470971 - L1M4 LINE L1 -6296 559 314 2441 60 7 13 chr6 12808867 12809169 -176470385 - AluY SINE Alu -11 300 1 525 268 138 17 chr6 12809199 12809438 -176470116 + MIR SINE MIR 1 256 -6 245 130 0 43 chr6 12809748 12809794 -176469760 + Tigger5 DNA MER2_type 2 45 -2278 * 1535 124 35 4 chr6 12809792 12810050 -176469504 + Tigger5 DNA MER2_type 2054 2319 -4 243 0 0 0 chr6 12810050 12810077 -176469477 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr6 12810471 12810499 -176469055 + AT_rich Low_complexity Low_complexity 1 28 0 276 263 26 26 chr6 12812878 12812992 -176466562 + L1ME LINE L1 5637 5750 -371 2103 108 13 25 chr6 12813349 12813664 -176465890 + AluSx SINE Alu 1 311 -1 192 317 17 0 chr6 12813665 12813725 -176465829 - L2 LINE L2 -226 3046 2986 1340 202 19 54 chr6 12814425 12814742 -176464812 - AluJo SINE Alu -6 306 1 662 222 80 9 chr6 12814887 12815112 -176464442 + Charlie4a DNA MER1_type 264 504 -4 2189 86 0 4 chr6 12815123 12815486 -176464068 + AluSc SINE Alu 5 366 0 285 327 133 18 chr6 12815561 12815842 -176463712 + MIR SINE MIR 1 253 -9 2106 131 118 5 chr6 12817395 12817776 -176461778 - MSTA LTR MaLR 0 428 5 2515 55 0 10 chr6 12817865 12818172 -176461382 + AluY SINE Alu 1 304 -7 2001 132 14 0 chr6 12818390 12818686 -176460868 - AluY SINE Alu -11 300 1 2681 23 0 7 chr6 12818800 12819108 -176460446 - AluYb8 SINE Alu -12 306 1 682 93 0 10 chr6 12819110 12819207 -176460347 - AluJb SINE Alu -14 298 203 27 0 0 0 chr6 12819248 12819275 -176460279 + AT_rich Low_complexity Low_complexity 1 27 0 287 279 91 19 chr6 12819454 12819608 -176459946 + MER104 DNA Tc2 4 168 -12 241 289 50 16 chr6 12819631 12819752 -176459802 - L1P LINE L1 -1135 5011 4887 2330 103 0 16 chr6 12820083 12820394 -176459160 - AluSx SINE Alu -6 306 1 216 146 0 49 chr6 12822247 12822288 -176457266 - MER91B DNA MER1_type -127 63 25 362 275 76 57 chr6 12823009 12823220 -176456334 - MIR SINE MIR -1 261 47 2387 84 0 7 chr6 12823226 12823522 -176456032 + AluSc SINE Alu 1 294 -15 279 0 0 0 chr6 12823573 12823604 -176455950 + (TG)n Simple_repeat Simple_repeat 2 32 0 2222 92 0 0 chr6 12823604 12823886 -176455668 - AluSg SINE Alu -28 282 1 21 0 0 0 chr6 12825225 12825246 -176454308 + AT_rich Low_complexity Low_complexity 1 21 0 181 333 43 0 chr6 12826955 12827024 -176452530 + MIR SINE MIR 117 188 -74 2516 56 0 3 chr6 12827031 12827334 -176452220 + AluY SINE Alu 1 302 -9 341 242 0 11 chr6 12827604 12827695 -176451859 - L1MC4 LINE L1 -1238 6804 6715 303 28 0 0 chr6 12827729 12827765 -176451789 + (TA)n Simple_repeat Simple_repeat 2 37 0 320 338 81 25 chr6 12827997 12828195 -176451359 - L1MC4a LINE L1 -1536 6272 6064 27 29 0 0 chr6 12828315 12828349 -176451205 + AT_rich Low_complexity Low_complexity 1 34 0 358 363 93 10 chr6 12829239 12829443 -176450111 - MIR SINE MIR -1 261 41 22 0 0 0 chr6 12829915 12829937 -176449617 + AT_rich Low_complexity Low_complexity 1 22 0 210 37 0 0 chr6 12829953 12829980 -176449574 + (TG)n Simple_repeat Simple_repeat 2 28 0 301 265 99 20 chr6 12831027 12831178 -176448376 - L1ME4a LINE L1 -24 6097 5935 385 251 60 27 chr6 12831210 12831393 -176448161 - L1ME4a LINE L1 -158 5963 5775 264 338 13 0 chr6 12831710 12831787 -176447767 - L2 LINE L2 -53 3219 3142 2245 88 3 0 chr6 12831929 12832214 -176447340 + AluSc SINE Alu 10 295 -14 309 250 83 33 chr6 12833052 12833172 -176446382 - L1MC4 LINE L1 -24 8018 7893 * 464 302 130 21 chr6 12833151 12833482 -176446072 - L1M4 LINE L1 -1757 4389 4023 1324 173 0 18 chr6 12833558 12833784 -176445770 - AluJb SINE Alu -6 306 85 23 0 0 0 chr6 12834506 12834529 -176445025 + AT_rich Low_complexity Low_complexity 1 23 0 204 339 0 0 chr6 12834617 12834676 -176444878 + MIR SINE MIR 204 262 0 210 174 0 0 chr6 12835553 12835599 -176443955 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1008 107 0 21 chr6 12835673 12835813 -176443741 - AluSp/q SINE Alu -10 303 167 1155 113 0 0 chr6 12835915 12836065 -176443489 - AluSq/x SINE Alu -162 150 1 192 286 48 32 chr6 12836546 12836609 -176442945 + L2 LINE L2 3200 3263 -9 214 274 41 14 chr6 12886861 12886934 -176392620 + L2 LINE L2 2985 3059 -213 2091 245 131 22 chr6 12889023 12889847 -176389707 + L2 LINE L2 2058 2971 -343 36484 80 8 11 chr6 12889863 12896026 -176383528 + L1PA6 LINE L1 11 6154 0 698 246 76 101 chr6 12896028 12896385 -176383169 + L2 LINE L2 2962 3309 -4 2285 107 0 0 chr6 12896655 12896945 -176382609 + AluSp SINE Alu 1 290 -23 198 348 43 0 chr6 12897192 12897261 -176382293 - L3b LINE CR1 -90 1493 1422 23 33 0 0 chr6 12901267 12901297 -176378257 + AT_rich Low_complexity Low_complexity 1 30 0 994 226 14 5 chr6 12902156 12902373 -176377181 - MER58A DNA MER1_type -5 219 1 2206 90 0 27 chr6 12902387 12902688 -176376866 + AluSx SINE Alu 20 312 0 23 0 0 0 chr6 12903526 12903549 -176376005 + AT_rich Low_complexity Low_complexity 1 23 0 205 291 0 18 chr6 12903801 12903856 -176375698 + MIR SINE MIR 32 85 -177 198 0 0 0 chr6 12904066 12904088 -176375466 + (A)n Simple_repeat Simple_repeat 1 22 0 1722 110 0 0 chr6 12904360 12904587 -176374967 + AluSq SINE Alu 1 227 -86 1025 245 84 41 chr6 12904601 12905070 -176374484 - L1MC4a LINE L1 -1202 6606 6126 1498 75 4 57 chr6 12905090 12905317 -176374237 + L1PA8 LINE L1 5948 6162 -10 2423 257 70 14 chr6 12905346 12905746 -176373808 - L1MCc LINE L1 -2848 4093 3717 5919 96 43 2 chr6 12905746 12907110 -176372444 - L1PA11 LINE L1 -1 6173 4768 2423 257 70 14 chr6 12907110 12908417 -176371137 - L1MCc LINE L1 -3224 3717 2306 1298 232 81 27 chr6 12908433 12909155 -176370399 - L1MCc LINE L1 -4851 1571 815 186 263 0 0 chr6 12909681 12909738 -176369816 + (TG)n Simple_repeat Simple_repeat 2 58 0 1212 171 82 31 chr6 12911136 12911429 -176368125 - LTR56 LTR ERV1 -137 308 1 25 75 0 0 chr6 12912679 12912732 -176366822 + AT_rich Low_complexity Low_complexity 1 53 0 200 86 29 0 chr6 12918021 12918056 -176361498 + (TA)n Simple_repeat Simple_repeat 2 37 0 411 152 54 0 chr6 12918067 12918179 -176361375 + (TA)n Simple_repeat Simple_repeat 1 118 0 305 181 121 24 chr6 12918179 12918262 -176361292 + L1MC4 LINE L1 6612 6702 -1340 349 253 31 0 chr6 12918278 12918440 -176361114 + (TA)n Simple_repeat Simple_repeat 1 167 0 310 258 34 11 chr6 12918441 12918530 -176361024 - L1MC4 LINE L1 -1340 6702 6612 308 241 23 11 chr6 12918455 12918542 -176361012 + L1MC4 LINE L1 6615 6702 -1340 * 258 186 35 12 chr6 12918559 12918645 -176360909 - L1MC4 LINE L1 -1341 6701 6614 359 179 0 63 chr6 12918676 12918771 -176360783 - L1MC4 LINE L1 -1339 6703 6615 317 242 0 53 chr6 12918793 12918888 -176360666 + L1MC4 LINE L1 6614 6703 -1339 23 0 0 0 chr6 12918888 12918911 -176360643 + AT_rich Low_complexity Low_complexity 1 23 0 1636 158 50 136 chr6 12919008 12919381 -176360173 + MER47B DNA MER2_type 1 329 -1994 2095 131 10 0 chr6 12919381 12919679 -176359875 - AluSx SINE Alu -9 303 3 1636 158 50 136 chr6 12919679 12919762 -176359792 + MER47B DNA MER2_type 329 418 0 289 318 45 23 chr6 12920305 12920354 -176359200 - L2 LINE L2 -7 3306 3260 2135 94 0 4 chr6 12920354 12920631 -176358923 + AluY SINE Alu 22 297 -14 289 318 45 23 chr6 12920631 12920713 -176358841 - L2 LINE L2 -53 3260 3172 185 333 0 18 chr6 12920970 12921027 -176358527 - MIR SINE MIR -58 150 95 184 279 74 41 chr6 12921492 12921614 -176357940 + L3 LINE CR1 740 865 -712 874 157 7 0 chr6 12921706 12921846 -176357708 - FLAM_C SINE Alu -2 141 1 193 270 29 31 chr6 12923209 12923283 -176356271 - MIR SINE MIR -100 108 46 26 30 0 0 chr6 12924799 12924832 -176354722 + AT_rich Low_complexity Low_complexity 1 33 0 192 125 0 0 chr6 12925288 12925320 -176354234 + (TTG)n Simple_repeat Simple_repeat 2 33 0 449 282 67 0 chr6 12925807 12925956 -176353598 + MIR SINE MIR 96 254 -8 208 233 0 0 chr6 12926014 12926057 -176353497 - L2 LINE L2 -3 3310 3268 2207 111 7 0 chr6 12926728 12927026 -176352528 - AluSq SINE Alu -13 300 1 1027 116 40 0 chr6 12927174 12927372 -176352182 - L1P LINE L1 -837 5309 5104 3260 86 0 7 chr6 12927372 12927825 -176351729 + L1PA14 LINE L1 5710 6159 -2 632 309 39 17 chr6 12927850 12928080 -176351474 + MIR SINE MIR 10 244 -18 21 71 0 0 chr6 12928372 12928414 -176351140 + AT_rich Low_complexity Low_complexity 1 42 0 378 323 86 23 chr6 12928485 12928788 -176350766 + L1MC4a LINE L1 5009 5330 -816 803 164 0 0 chr6 12928803 12928925 -176350629 + FLAM_C SINE Alu 3 124 -19 442 338 84 23 chr6 12928943 12929503 -176350051 + L1MC4a LINE L1 5338 5924 -246 206 73 98 0 chr6 12930325 12930366 -176349188 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 445 275 106 0 chr6 12930564 12930706 -176348848 - MIR SINE MIR -19 243 87 2348 74 0 0 chr6 12931573 12931892 -176347662 + AluY SINE Alu 1 319 0 970 106 0 144 chr6 12931892 12932068 -176347486 - AluJo/FRAM SINE Alu -24 288 138 594 103 0 0 chr6 12934469 12934556 -176344998 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 22 0 0 0 chr6 12935361 12935383 -176344171 + AT_rich Low_complexity Low_complexity 1 22 0 247 329 56 33 chr6 12935588 12935892 -176343662 + L1MC4a LINE L1 107 417 -5979 1876 229 15 23 chr6 12936071 12936590 -176342964 + L1ME LINE L1 5283 5797 -369 836 231 61 60 chr6 12936602 12937041 -176342513 + L1ME1 LINE L1 5711 6112 -54 640 256 97 65 chr6 12937116 12937714 -176341840 + L1MC4a LINE L1 707 1323 -5073 2115 157 35 39 chr6 12937726 12938088 -176341466 + MSTB1 LTR MaLR 1 362 -70 2010 140 24 0 chr6 12938088 12938380 -176341174 - AluSx SINE Alu -13 299 1 2115 157 35 39 chr6 12938380 12938449 -176341105 + MSTB1 LTR MaLR 362 430 -2 329 354 36 10 chr6 12938613 12938805 -176340749 + L1MC4a LINE L1 3781 3977 -2238 487 317 53 43 chr6 12939088 12939410 -176340144 + L1MC4a LINE L1 4452 4776 -1439 29 28 0 0 chr6 12939681 12939717 -176339837 + AT_rich Low_complexity Low_complexity 1 36 0 768 294 75 35 chr6 12939933 12940461 -176339093 + L1MC4a LINE L1 5365 5921 -1956 204 40 0 0 chr6 12940461 12940486 -176339068 + (TTGTG)n Simple_repeat Simple_repeat 3 27 0 768 294 75 35 chr6 12940486 12940558 -176338996 + L1MC4a LINE L1 5921 5989 -1888 492 300 106 51 chr6 12940799 12941343 -176338211 + L2 LINE L2 2737 3313 0 1978 148 3 13 chr6 12941802 12942112 -176337442 + AluJo SINE Alu 1 307 -5 23 54 0 0 chr6 12942119 12942156 -176337398 + AT_rich Low_complexity Low_complexity 1 37 0 429 296 86 26 chr6 12942355 12942507 -176337047 - MIR3 SINE MIR -6 202 42 837 95 107 48 chr6 12942796 12942932 -176336622 - L1MA4A LINE L1 -6 6297 6148 2162 118 137 11 chr6 12942932 12943312 -176336242 + MSTA LTR MaLR 1 428 0 837 95 107 48 chr6 12943312 12943343 -176336211 - L1MA4A LINE L1 -155 6148 6120 515 185 120 0 chr6 12943453 12943561 -176335993 + MIR SINE MIR 66 186 -76 332 157 0 39 chr6 12943561 12943638 -176335916 - Alu SINE Alu -249 51 1 595 317 52 20 chr6 12943721 12944128 -176335426 - L1ME LINE L1 -331 5790 5371 911 186 61 8 chr6 12944499 12944762 -176334792 + MER33 DNA MER1_type 26 302 -22 207 0 0 0 chr6 12944856 12944879 -176334675 + (GA)n Simple_repeat Simple_repeat 2 24 0 2322 95 0 3 chr6 12945013 12945319 -176334235 + AluSx SINE Alu 1 305 -7 494 258 32 24 chr6 12945708 12945832 -176333722 + L2 LINE L2 3188 3312 -1 423 244 122 24 chr6 12945987 12946151 -176333403 - MIR SINE MIR -25 237 58 205 306 111 37 chr6 12946183 12946291 -176333263 + L3 LINE CR1 308 423 -1154 449 317 181 5 chr6 12946450 12946671 -176332883 + L3 LINE CR1 413 672 -905 274 304 34 47 chr6 12947372 12947520 -176332034 - L2 LINE L2 -2 3311 3166 2277 97 19 10 chr6 12947770 12948079 -176331475 + AluSx SINE Alu 1 312 0 452 310 111 74 chr6 12948091 12948803 -176330751 - L2 LINE L2 -448 2866 2129 183 80 0 0 chr6 12948956 12948981 -176330573 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 676 274 62 46 chr6 12949016 12949275 -176330279 - L2 LINE L2 -90 3223 2961 710 105 105 15 chr6 12949277 12949410 -176330144 - MLT2D LTR ERVL -269 145 1 510 287 14 7 chr6 12949410 12949553 -176330001 - L2 LINE L2 -654 2660 2517 353 83 0 0 chr6 12949775 12949823 -176329731 + MSTA LTR MaLR 378 425 -3 2125 110 7 0 chr6 12949855 12950145 -176329409 - AluSp SINE Alu -12 301 10 2365 162 58 9 chr6 12950570 12951033 -176328521 + MER66B LTR ERV1 1 486 0 1893 157 3 10 chr6 12951689 12952008 -176327546 + AluJb SINE Alu 1 312 0 1760 135 69 10 chr6 12952644 12952933 -176326621 - AluJb SINE Alu -6 306 1 2326 97 3 0 chr6 12954289 12954588 -176324966 + AluSq SINE Alu 1 300 -13 207 288 0 17 chr6 12954788 12954847 -176324707 + L2 LINE L2 3190 3247 -25 203 250 21 0 chr6 12954849 12954897 -176324657 + CT-rich Low_complexity Low_complexity 1 49 0 212 225 70 14 chr6 12954899 12954970 -176324584 - L2 LINE L2 -5 3267 3193 314 208 146 21 chr6 12955157 12955253 -176324301 - L2 LINE L2 0 3313 3206 713 279 83 0 chr6 12955430 12955683 -176323871 - L2 LINE L2 -317 2996 2728 2482 64 0 0 chr6 12955684 12955979 -176323575 + AluY SINE Alu 1 295 -16 488 305 121 0 chr6 12956008 12956198 -176323356 + MIR SINE MIR 1 213 -49 220 344 33 22 chr6 12956281 12956371 -176323183 - MIR SINE MIR -155 107 17 1730 183 83 74 chr6 12956447 12956618 -176322936 + MLT1C LTR MaLR 1 169 -298 2164 124 0 3 chr6 12956618 12956925 -176322629 - AluSx SINE Alu -2 310 5 1730 183 83 74 chr6 12956925 12957211 -176322343 + MLT1C LTR MaLR 169 462 -5 1421 170 90 7 chr6 12958116 12958237 -176321317 + AluJo SINE Alu 1 111 -201 216 0 0 0 chr6 12958237 12958261 -176321293 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1421 170 90 7 chr6 12958261 12958416 -176321138 + AluJo SINE Alu 111 300 -12 2048 184 23 10 chr6 12959010 12959395 -176320159 + MLT1B LTR MaLR 1 390 0 1066 281 97 60 chr6 12959446 12959705 -176319849 + L2 LINE L2 2840 3125 -188 1927 76 0 0 chr6 12959705 12959941 -176319613 + AluY SINE Alu 60 295 -16 1066 281 97 60 chr6 12959941 12960133 -176319421 + L2 LINE L2 3125 3308 -5 241 227 136 0 chr6 12960152 12960218 -176319336 - MIR SINE MIR -1 261 187 1009 132 92 0 chr6 12960463 12960615 -176318939 + AluSg/x SINE Alu 135 300 -12 2724 32 0 3 chr6 12961612 12961922 -176317632 + AluY SINE Alu 1 309 -2 186 43 0 0 chr6 12961959 12961982 -176317572 + (TA)n Simple_repeat Simple_repeat 1 23 0 241 217 24 48 chr6 12962014 12962097 -176317457 - L1MC4 LINE L1 -1341 6701 6621 350 247 13 52 chr6 12962120 12962274 -176317280 - HAL1b LINE L1 -7 1341 1194 526 318 50 0 chr6 12962486 12962687 -176316867 - Charlie8 DNA MER1_type -2152 265 55 1842 154 7 7 chr6 12962687 12962985 -176316569 + AluJo SINE Alu 9 306 -6 204 227 0 0 chr6 12963032 12963076 -176316478 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 582 187 87 124 chr6 12963176 12963268 -176316286 - HAL1b LINE L1 -191 1157 1063 2311 107 0 3 chr6 12963268 12963576 -176315978 + AluSc SINE Alu 1 307 -2 582 187 87 124 chr6 12963576 12963782 -176315772 - HAL1b LINE L1 -285 1063 870 1933 131 34 10 chr6 12964056 12964354 -176315200 + AluJo SINE Alu 1 305 -7 265 219 109 0 chr6 12964694 12964758 -176314796 - MIR3 SINE MIR -27 181 111 2080 110 73 51 chr6 12965061 12965417 -176314137 - THE1B LTR MaLR 0 364 1 2008 157 7 0 chr6 12965503 12965803 -176313751 - AluJb SINE Alu -10 302 1 24 53 0 0 chr6 12965909 12965947 -176313607 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr6 12966017 12966040 -176313514 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2241 64 0 18 chr6 12966172 12966452 -176313102 + AluY SINE Alu 28 302 -9 240 59 0 0 chr6 12966572 12966606 -176312948 + (TG)n Simple_repeat Simple_repeat 1 34 0 541 318 106 0 chr6 12966784 12967029 -176312525 + L2 LINE L2 687 957 -2357 585 262 54 47 chr6 12967283 12967581 -176311973 - L1ME3A LINE L1 -219 5951 5652 2657 259 132 68 chr6 12967657 12969258 -176310296 + L2 LINE L2 964 2666 -648 1352 230 104 211 chr6 12969314 12969387 -176310167 - L1ME3 LINE L1 -4 6158 6079 1743 156 20 89 chr6 12969387 12969457 -176310097 + MLT1A1 LTR MaLR 1 74 -291 2220 120 0 0 chr6 12969457 12969758 -176309796 - AluSx SINE Alu -11 301 1 1743 156 20 89 chr6 12969758 12970079 -176309475 + MLT1A1 LTR MaLR 74 365 0 1352 230 104 211 chr6 12970079 12970533 -176309021 - L1ME3 LINE L1 -83 6079 5578 832 165 0 8 chr6 12970533 12970666 -176308888 - FLAM_C SINE Alu -1 132 1 1352 230 104 211 chr6 12970666 12970724 -176308830 - L1ME3 LINE L1 -584 5578 5515 1507 144 20 111 chr6 12970724 12971065 -176308489 + AluYb8 SINE Alu 1 310 -8 1352 230 104 211 chr6 12971065 12971229 -176308325 - L1ME3 LINE L1 -647 5515 5438 747 296 103 40 chr6 12971299 12971724 -176307830 + L2 LINE L2 2848 3299 -14 269 241 12 24 chr6 12971798 12971881 -176307673 + CT-rich Low_complexity Low_complexity 4 85 0 1638 165 26 0 chr6 12972026 12972292 -176307262 + AluJb SINE Alu 4 276 -36 251 291 311 0 chr6 12975216 12975319 -176304235 + L2 LINE L2 3138 3272 0 1823 161 3 40 chr6 12976044 12976368 -176303186 - AluJo SINE Alu 0 312 1 773 124 23 16 chr6 12977014 12977143 -176302411 - L1MA7 LINE L1 -130 6161 6032 763 150 22 83 chr6 12977137 12977276 -176302278 + L1MA7 LINE L1 6123 6250 -41 * 2154 107 3 13 chr6 12977276 12977584 -176301970 - AluSg SINE Alu -5 305 1 763 150 22 83 chr6 12977584 12977624 -176301930 + L1MA7 LINE L1 6250 6291 0 2184 112 3 7 chr6 12978465 12978760 -176300794 - AluSx SINE Alu -18 294 1 284 336 29 36 chr6 12978779 12978919 -176300635 + L2 LINE L2 3134 3272 0 325 300 53 41 chr6 12978957 12979127 -176300427 - L2 LINE L2 -202 3070 2899 409 230 7 82 chr6 12979526 12979661 -176299893 - L2 LINE L2 -5 3267 3143 327 219 115 31 chr6 12979731 12979827 -176299727 - MIR SINE MIR -86 176 73 216 86 0 0 chr6 12979956 12979991 -176299563 + (CA)n Simple_repeat Simple_repeat 2 36 0 194 312 46 9 chr6 12980486 12980595 -176298959 - L3b LINE CR1 -350 1233 1121 3450 191 40 8 chr6 12980704 12981327 -176298227 + MER82 DNA MER2_type 11 653 0 25 31 0 0 chr6 12981570 12981602 -176297952 + AT_rich Low_complexity Low_complexity 1 32 0 40 0 0 0 chr6 12982581 12982621 -176296933 + AT_rich Low_complexity Low_complexity 1 40 0 365 137 29 29 chr6 12982621 12982760 -176296794 + (TATAA)n Simple_repeat Simple_repeat 1 139 0 273 299 118 76 chr6 12983842 12983986 -176295568 - MIR3 SINE MIR -8 200 51 270 286 104 39 chr6 12984928 12985110 -176294444 - MIR SINE MIR -67 195 2 346 196 134 10 chr6 12985589 12985686 -176293868 + MIR3 SINE MIR 48 156 -52 998 168 100 0 chr6 12986181 12986371 -176293183 + MER3 DNA MER1_type 1 209 0 1727 132 88 7 chr6 12986782 12987054 -176292500 - AluSx SINE Alu -18 294 1 3743 47 2 11 chr6 12987318 12987769 -176291785 - L1PA5 LINE L1 0 6154 5708 2227 100 3 10 chr6 12988385 12988685 -176290869 + AluSx SINE Alu 4 301 -11 824 328 31 22 chr6 12989793 12990113 -176289441 + MLT1J LTR MaLR 10 332 -179 1787 161 55 0 chr6 12990121 12990412 -176289142 + AluJo SINE Alu 1 307 -5 785 281 136 13 chr6 12991284 12991594 -176287960 + MLT1J LTR MaLR 159 506 -5 2085 94 3 21 chr6 12991649 12991937 -176287617 - AluSx SINE Alu -1 311 29 682 244 19 6 chr6 12992879 12993039 -176286515 + MIR SINE MIR 20 181 -81 186 323 202 0 chr6 12993222 12993321 -176286233 + L2 LINE L2 2851 2969 -303 2552 132 62 7 chr6 12993460 12993782 -176285772 - Tigger2 DNA MER2_type 0 2718 2366 397 0 38 0 chr6 12993782 12993835 -176285719 + (GGA)n Simple_repeat Simple_repeat 2 56 0 2552 132 62 7 chr6 12993835 12993930 -176285624 - Tigger2 DNA MER2_type -352 2366 2278 404 179 15 0 chr6 12993926 12993993 -176285561 - Tigger2 DNA MER2_type -2650 68 1 * 589 200 48 61 chr6 12994503 12994733 -176284821 - Charlie1a DNA MER1_type 0 1455 1229 1940 197 44 19 chr6 12994734 12995166 -176284388 - Charlie1a DNA MER1_type -590 865 423 797 184 21 14 chr6 12995192 12995333 -176284221 - Charlie1a DNA MER1_type -1313 142 1 223 291 101 42 chr6 12995672 12995839 -176283715 - MIR SINE MIR -46 216 40 301 258 0 0 chr6 12997450 12997512 -176282042 + L2 LINE L2 3250 3311 -2 2191 126 7 0 chr6 12998023 12998333 -176281221 - AluSx SINE Alu 0 312 1 561 239 112 30 chr6 12998362 12998546 -176281008 + MLT1A2 LTR MaLR 3 190 -184 710 192 23 57 chr6 12998731 12998908 -176280646 + MLT1A2 LTR MaLR 204 374 0 370 250 214 0 chr6 12999558 12999702 -176279852 - MER5A DNA MER1_type -6 183 4 534 189 78 46 chr6 13002400 13002553 -176277001 + LTR45B LTR ERV1 332 489 0 204 125 0 0 chr6 13003385 13003417 -176276137 + (GAA)n Simple_repeat Simple_repeat 1 32 0 391 232 22 111 chr6 13003767 13003948 -176275606 - L2 LINE L2 -2 3311 3147 422 323 111 66 chr6 13004306 13005023 -176274531 + L2 LINE L2 2439 3185 -87 294 307 46 44 chr6 13005528 13005828 -176273726 + L1ME LINE L1 3566 3863 -2283 258 295 13 0 chr6 13006249 13006327 -176273227 - MER116 DNA Mariner -1 79 1 1779 149 9 35 chr6 13006559 13006875 -176272679 + AluJo SINE Alu 1 308 -4 1748 167 20 7 chr6 13008666 13008966 -176270588 + AluJb SINE Alu 1 304 -8 341 312 112 54 chr6 13009628 13010244 -176269310 + L1ME LINE L1 4089 4847 -1299 181 288 51 0 chr6 13010356 13010415 -176269139 + L2 LINE L2 3251 3312 -1 226 318 143 32 chr6 13010834 13011211 -176268343 - HAL1 LINE L1 -53 2454 2036 729 264 60 0 chr6 13011388 13011653 -176267901 + L1ME LINE L1 5501 5781 -340 194 340 55 74 chr6 13012109 13012365 -176267189 - L2 LINE L2 -2845 469 219 2277 123 0 0 chr6 13013084 13013386 -176266168 + AluSq SINE Alu 1 302 -11 205 283 85 38 chr6 13014725 13014831 -176264723 + MIR SINE MIR 14 124 -138 1555 96 50 0 chr6 13015012 13015231 -176264323 + MER30 DNA MER1_type 1 230 0 1728 183 15 66 chr6 13015782 13016193 -176263361 + MLT1B LTR MaLR 1 390 0 448 301 72 80 chr6 13016966 13017315 -176262239 - L2 LINE L2 -62 3210 2865 1581 122 8 0 chr6 13017557 13017811 -176261743 + Tigger1 DNA MER2_type 1 256 -2162 417 71 0 0 chr6 13017822 13017878 -176261676 + Tigger1 DNA MER2_type 1415 1470 -948 * 6167 106 18 1 chr6 13017877 13018817 -176260737 + Tigger1 DNA MER2_type 617 1572 -846 12264 177 30 11 chr6 13018822 13021484 -176258070 - L1 LINE L1 -1000 6565 3851 1765 264 48 19 chr6 13021487 13022467 -176257087 - L1 LINE L1 -3814 3751 2740 2119 124 0 29 chr6 13022947 13023261 -176256293 - AluSq SINE Alu -8 305 1 429 300 83 83 chr6 13023470 13023833 -176255721 - L2 LINE L2 -47 3225 2863 198 0 0 0 chr6 13024099 13024121 -176255433 + (T)n Simple_repeat Simple_repeat 1 22 0 399 210 121 57 chr6 13025017 13025141 -176254413 + L2 LINE L2 3182 3313 0 301 272 99 0 chr6 13025211 13025324 -176254230 - MIR SINE MIR -50 158 34 540 83 31 10 chr6 13025423 13025519 -176254035 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 28 86 0 0 chr6 13026033 13026103 -176253451 + AT_rich Low_complexity Low_complexity 1 70 0 243 0 0 0 chr6 13026297 13026324 -176253230 + (TG)n Simple_repeat Simple_repeat 1 27 0 2550 71 0 0 chr6 13026376 13026685 -176252869 + AluY SINE Alu 2 310 -1 264 355 45 0 chr6 13026878 13026988 -176252566 - L2 LINE L2 -20 3252 3138 245 307 139 7 chr6 13027131 13027268 -176252286 - L2 LINE L2 -219 3053 2899 207 302 125 0 chr6 13027724 13027820 -176251734 - L2 LINE L2 -785 2529 2422 866 243 19 10 chr6 13027826 13028032 -176251522 - MIR SINE MIR 0 262 55 289 329 47 47 chr6 13028012 13028246 -176251308 - L2 LINE L2 -1067 2247 2014 * 2291 93 10 16 chr6 13029104 13029417 -176250137 + AluSx SINE Alu 1 311 -1 219 311 16 33 chr6 13029603 13029725 -176249829 + L2 LINE L2 3126 3245 -68 22 0 0 0 chr6 13030924 13030946 -176248608 + AT_rich Low_complexity Low_complexity 1 22 0 1980 141 7 0 chr6 13031107 13031413 -176248141 + AluSx SINE Alu 1 308 0 204 206 82 55 chr6 13031964 13032037 -176247517 - MIR SINE MIR -96 166 92 261 180 0 0 chr6 13033068 13033118 -176246436 + CT-rich Low_complexity Low_complexity 3 52 0 744 138 69 0 chr6 13034884 13035000 -176244554 + AluJb SINE Alu 161 284 -28 480 35 0 0 chr6 13035000 13035058 -176244496 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 200 122 41 0 chr6 13035058 13035107 -176244447 + GA-rich Low_complexity Low_complexity 3 53 0 1136 75 0 32 chr6 13035107 13035293 -176244261 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 26 88 0 0 chr6 13035569 13035637 -176243917 + AT_rich Low_complexity Low_complexity 1 68 0 2070 107 42 0 chr6 13036065 13036354 -176243200 - AluSp SINE Alu -12 301 1 469 185 66 13 chr6 13036514 13036665 -176242889 - MER113 DNA MER1_type? -361 160 2 1921 142 0 25 chr6 13037326 13037642 -176241912 + AluJo SINE Alu 1 308 -4 402 31 47 0 chr6 13038143 13038207 -176241347 + (TC)n Simple_repeat Simple_repeat 2 68 0 378 0 0 0 chr6 13038207 13038249 -176241305 + (CA)n Simple_repeat Simple_repeat 1 42 0 180 77 0 0 chr6 13038568 13038594 -176240960 + (GGGTG)n Simple_repeat Simple_repeat 4 29 0 348 330 68 0 chr6 13043422 13043525 -176236029 - MIR SINE MIR -57 151 42 180 0 0 0 chr6 13045415 13045435 -176234119 + (T)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr6 13045977 13046006 -176233548 + AT_rich Low_complexity Low_complexity 1 29 0 221 268 42 56 chr6 13048759 13048830 -176230724 + MIR SINE MIR 83 152 -56 252 306 35 0 chr6 13049584 13049669 -176229885 - MIR SINE MIR -68 140 53 21 0 0 0 chr6 13049940 13049961 -176229593 + AT_rich Low_complexity Low_complexity 1 21 0 2441 84 3 0 chr6 13050019 13050328 -176229226 - AluSp SINE Alu -3 310 1 191 304 30 67 chr6 13050660 13050795 -176228759 - MIR SINE MIR -83 179 50 23 0 0 0 chr6 13051985 13052008 -176227546 + AT_rich Low_complexity Low_complexity 1 23 0 4018 119 2 5 chr6 13052011 13052622 -176226932 - L1PB3 LINE L1 -1 6153 5545 279 333 56 0 chr6 13052784 13052910 -176226644 + MER94 DNA DNA 2 134 0 217 347 0 14 chr6 13053052 13053124 -176226430 + L2 LINE L2 3202 3272 0 242 259 82 24 chr6 13053501 13053586 -176225968 - L2 LINE L2 -896 2418 2329 2595 128 6 60 chr6 13053598 13054023 -176225531 + MER65A LTR ERV1 1 400 -45 1750 176 14 3 chr6 13054023 13054312 -176225242 - AluJo SINE Alu -20 292 1 2595 128 6 60 chr6 13054312 13054356 -176225198 + MER65A LTR ERV1 400 445 0 494 235 16 43 chr6 13054365 13054552 -176225002 - L1MC5 LINE L1 -55 7906 7725 624 220 83 38 chr6 13054714 13054928 -176224626 - MIR SINE MIR -14 248 13 438 155 0 0 chr6 13055758 13055829 -176223725 - MER92C LTR ERV1 0 554 484 335 235 174 0 chr6 13055974 13056072 -176223482 - MER92B LTR ERV1 -521 115 1 357 196 22 33 chr6 13056917 13057009 -176222545 - LTR37A LTR ERV1 -326 100 10 2320 210 31 76 chr6 13057016 13058051 -176221503 - MER31-int LTR ERV1 -679 5492 3625 373 196 49 29 chr6 13058116 13058218 -176221336 - MER31-int LTR ERV1 -1662 3274 3171 1239 127 183 31 chr6 13058414 13058701 -176220853 - MSTA LTR MaLR 0 428 100 191 341 66 11 chr6 13058831 13058922 -176220632 - MER5B DNA MER1_type -82 96 1 2394 128 5 11 chr6 13059545 13059912 -176219642 + MLT1A1 LTR MaLR 1 365 0 2126 132 0 3 chr6 13060089 13060392 -176219162 - AluSx SINE Alu -10 302 1 378 275 20 40 chr6 13060569 13060769 -176218785 - MER31-int LTR ERV1 -3061 1875 1680 306 236 12 61 chr6 13060910 13061075 -176218479 - MER31-int LTR ERV1 -3493 1443 1287 502 288 4 49 chr6 13061163 13061406 -176218148 - MER31-int LTR ERV1 -3664 1272 1041 571 295 69 6 chr6 13061865 13062038 -176217516 + MIR SINE MIR 3 186 -76 1966 136 4 0 chr6 13062122 13062430 -176217124 - AluJb SINE Alu 0 309 1 362 331 42 14 chr6 13062477 13062619 -176216935 - MER5A DNA MER1_type -6 183 38 2199 93 7 0 chr6 13062669 13062949 -176216605 + AluSc SINE Alu 1 282 -27 510 169 16 33 chr6 13062965 13063148 -176216406 + (TA)n Simple_repeat Simple_repeat 1 180 0 317 309 259 10 chr6 13063268 13063469 -176216085 + L2 LINE L2 3020 3270 -2 327 115 19 0 chr6 13063594 13063646 -176215908 + L1M4 LINE L1 5203 5255 -891 535 229 104 26 chr6 13064185 13064377 -176215177 + L1ME3A LINE L1 5959 6165 -5 239 281 0 0 chr6 13064402 13064459 -176215095 + T-rich Low_complexity Low_complexity 1 57 0 3362 245 70 54 chr6 13065654 13067304 -176212250 - L1ME2 LINE L1 -11 6948 5243 2042 124 0 7 chr6 13067304 13067613 -176211941 + AluSg SINE Alu 2 308 0 3362 245 70 54 chr6 13067613 13068339 -176211215 - L1ME2 LINE L1 -1716 5243 4530 270 219 0 0 chr6 13068340 13068404 -176211150 + (TA)n Simple_repeat Simple_repeat 2 65 0 266 250 0 22 chr6 13068404 13068496 -176211058 - L1MC4 LINE L1 -1339 6703 6614 234 230 0 80 chr6 13068420 13068520 -176211034 + L1MC4 LINE L1 6614 6705 -1337 * 2095 132 6 3 chr6 13068548 13068875 -176210679 - MER46B DNA MER2_type -1 235 33 994 317 62 29 chr6 13068913 13069636 -176209918 - L1ME2 LINE L1 -5004 1419 817 1899 102 0 0 chr6 13070803 13071049 -176208505 - AluSq SINE Alu -16 297 52 270 239 35 115 chr6 13071553 13071666 -176207888 - L1ME2 LINE L1 -5980 443 340 1594 183 39 14 chr6 13071723 13072008 -176207546 + AluJb SINE Alu 4 295 -17 269 264 16 109 chr6 13072095 13072158 -176207396 - L1ME2 LINE L1 -6240 183 116 1616 177 0 31 chr6 13072158 13072473 -176207081 - AluJo SINE Alu 0 311 6 269 264 16 109 chr6 13072473 13072601 -176206953 - L1ME2 LINE L1 -6307 116 9 288 0 0 0 chr6 13072647 13072679 -176206875 + (CA)n Simple_repeat Simple_repeat 2 33 0 1069 231 9 5 chr6 13072748 13072964 -176206590 + MER20 DNA MER1_type 3 219 0 957 163 12 0 chr6 13073624 13073784 -176205770 + FRAM SINE Alu 6 167 -9 33 0 0 0 chr6 13074369 13074402 -176205152 + AT_rich Low_complexity Low_complexity 1 33 0 234 0 0 0 chr6 13075007 13075033 -176204521 + (A)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr6 13076644 13076665 -176202889 + AT_rich Low_complexity Low_complexity 1 21 0 2006 109 31 3 chr6 13076928 13077221 -176202333 + AluSq SINE Alu 1 301 -12 210 207 35 17 chr6 13077520 13077578 -176201976 - MIR3 SINE MIR -7 201 143 497 274 57 33 chr6 13078501 13078800 -176200754 + L1MEd LINE L1 592 897 -5222 238 359 53 57 chr6 13079176 13079441 -176200113 + L2 LINE L2 2553 2816 -498 243 0 0 0 chr6 13129592 13129619 -176149935 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 1542 170 60 7 chr6 13132806 13133089 -176146465 - AluJb SINE Alu -14 298 1 328 238 103 8 chr6 13133126 13133252 -176146302 - MIR SINE MIR -6 256 119 693 164 0 0 chr6 13133508 13133618 -176145936 + FLAM_C SINE Alu 2 111 -32 276 100 0 0 chr6 13133624 13133664 -176145890 + (TTA)n Simple_repeat Simple_repeat 2 41 0 515 217 19 0 chr6 13133923 13134029 -176145525 + MER5A DNA MER1_type 2 109 -80 2435 158 15 33 chr6 13134354 13134879 -176144675 + MER6A DNA MER2_type 43 605 0 2508 55 0 10 chr6 13134990 13135302 -176144252 - AluY SINE Alu -2 309 1 2162 117 17 0 chr6 13135468 13135758 -176143796 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr6 13135758 13135781 -176143773 + (GA)n Simple_repeat Simple_repeat 2 24 0 618 21 21 32 chr6 13135962 13136055 -176143499 + (TTTC)n Simple_repeat Simple_repeat 1 92 0 1479 189 10 38 chr6 13136056 13136548 -176143006 - AluJo SINE Alu 0 483 1 341 261 135 79 chr6 13136601 13136816 -176142738 + L2 LINE L2 3045 3271 -1 236 376 20 7 chr6 13137533 13137682 -176141872 + CT-rich Low_complexity Low_complexity 2 152 0 5341 128 2 15 chr6 13138647 13138858 -176140696 - L1PA13 LINE L1 -7 6156 5944 2271 122 125 10 chr6 13138858 13139242 -176140312 - MSTA LTR MaLR 0 428 1 9636 172 18 10 chr6 13139242 13140881 -176138673 - MSTA-int LTR MaLR 0 1651 1 2230 118 121 23 chr6 13140881 13141271 -176138283 - MSTA LTR MaLR 0 428 1 5341 128 2 15 chr6 13141271 13141907 -176137647 - L1PA13 LINE L1 -216 5947 5318 1967 120 33 7 chr6 13141915 13142214 -176137340 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 13142595 13142617 -176136937 + AT_rich Low_complexity Low_complexity 1 22 0 181 233 17 50 chr6 13144786 13144846 -176134708 - L2 LINE L2 -55 3258 3201 403 184 22 0 chr6 13145134 13145220 -176134334 + L1ME3 LINE L1 6012 6100 -62 180 0 0 0 chr6 13145521 13145541 -176134013 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 463 240 13 52 chr6 13145676 13145830 -176133724 - MER5B DNA MER1_type -11 167 20 273 180 0 0 chr6 13146225 13146275 -176133279 - Alu SINE Alu -2 300 251 2058 146 3 3 chr6 13146309 13146617 -176132937 - AluSx SINE Alu -4 308 1 944 123 0 0 chr6 13146628 13146750 -176132804 - FLAM_C SINE Alu -21 122 1 1542 192 11 7 chr6 13148196 13148477 -176131077 - AluJo SINE Alu -30 282 1 245 229 48 24 chr6 13149122 13149205 -176130349 - L2 LINE L2 0 3313 3229 198 171 0 0 chr6 13149315 13149356 -176130198 + A-rich Low_complexity Low_complexity 1 41 0 1182 261 121 2 chr6 13149541 13149939 -176129615 - LTR16B LTR ERVL -2 462 18 234 257 98 87 chr6 13149941 13149991 -176129563 - MLT1L LTR MaLR -13 602 554 885 193 156 0 chr6 13149991 13150183 -176129371 - MER58A DNA MER1_type -1 223 2 234 257 98 87 chr6 13150183 13150315 -176129239 - MLT1L LTR MaLR -61 554 418 1036 250 79 53 chr6 13150419 13151124 -176128430 - L2 LINE L2 -15 3298 2555 1123 159 92 0 chr6 13151179 13151374 -176128180 - MER30 DNA MER1_type -17 213 1 591 311 45 8 chr6 13151374 13151641 -176127913 - L2 LINE L2 -820 2494 2218 234 242 0 76 chr6 13151643 13151709 -176127845 - MLT1J LTR MaLR -340 171 111 198 235 141 0 chr6 13151804 13151889 -176127665 + MIR SINE MIR 100 196 -66 2243 121 3 0 chr6 13151901 13152208 -176127346 + AluSq SINE Alu 1 308 -5 381 22 0 0 chr6 13153058 13153104 -176126450 + (TG)n Simple_repeat Simple_repeat 1 46 0 408 71 0 0 chr6 13153104 13153160 -176126394 + (GA)n Simple_repeat Simple_repeat 2 57 0 2467 130 19 3 chr6 13153160 13153538 -176126016 - MLT1B LTR MaLR -6 384 1 213 39 0 0 chr6 13153538 13153564 -176125990 + (TG)n Simple_repeat Simple_repeat 2 27 0 215 152 22 0 chr6 13153572 13153618 -176125936 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 215 233 23 23 chr6 13153652 13153738 -176125816 + (TA)n Simple_repeat Simple_repeat 1 86 0 342 0 0 0 chr6 13154494 13154532 -176125022 + (TG)n Simple_repeat Simple_repeat 2 39 0 1934 146 0 0 chr6 13154532 13154812 -176124742 - AluJb SINE Alu -27 285 6 262 229 16 0 chr6 13154888 13154949 -176124605 + MER5A DNA MER1_type 34 95 -94 549 299 6 0 chr6 13155231 13155408 -176124146 + MIR SINE MIR 80 257 -5 2435 325 121 37 chr6 13155783 13157733 -176121821 - L2 LINE L2 -49 3264 1147 25 0 0 0 chr6 13158213 13158238 -176121316 + AT_rich Low_complexity Low_complexity 1 25 0 752 211 48 6 chr6 13159217 13159383 -176120171 + MER5B DNA MER1_type 2 174 -4 535 229 153 0 chr6 13159395 13159552 -176120002 - MER5A DNA MER1_type 0 189 9 474 284 79 49 chr6 13159591 13159952 -176119602 + L2 LINE L2 2917 3311 -2 394 203 76 0 chr6 13160020 13160099 -176119455 - MER5B DNA MER1_type -30 148 64 226 271 45 75 chr6 13160706 13160839 -176118715 - MIR SINE MIR -75 187 59 302 247 11 21 chr6 13161705 13161798 -176117756 - L3 LINE CR1 -181 1396 1305 180 325 161 46 chr6 13161869 13162174 -176117380 - L3 LINE CR1 -291 1286 947 2131 227 23 24 chr6 13162706 13162740 -176116814 - L1 LINE L1 -1100 5046 5013 1760 178 20 0 chr6 13162740 13163032 -176116522 - AluJo SINE Alu -14 298 1 2131 227 23 24 chr6 13163032 13163573 -176115981 - L1 LINE L1 -1133 5013 4472 901 165 15 0 chr6 13163586 13163719 -176115835 - AluJo SINE Alu -177 135 1 394 164 39 0 chr6 13163720 13163824 -176115730 - L1 LINE L1 -1669 4477 4370 396 243 27 81 chr6 13163829 13163977 -176115577 - MIR SINE MIR -105 157 18 272 303 100 40 chr6 13164703 13164749 -176114805 + L2 LINE L2 2440 2482 -832 186 43 0 0 chr6 13164749 13164772 -176114782 + (TCCA)n Simple_repeat Simple_repeat 2 24 0 272 303 100 40 chr6 13164772 13164976 -176114578 + L2 LINE L2 2482 2705 -609 968 292 62 28 chr6 13165161 13165630 -176113924 - LTR33A LTR ERVL -24 499 15 226 306 42 14 chr6 13165632 13165704 -176113850 + L2 LINE L2 2987 3060 -212 489 278 122 10 chr6 13165874 13166162 -176113392 - L1MC/D LINE L1 -2234 5574 5255 2032 108 0 4 chr6 13166460 13166729 -176112825 - AluSq SINE Alu -18 295 28 636 264 119 42 chr6 13167419 13168182 -176111372 + L1MDa LINE L1 1640 2536 -4185 294 213 162 78 chr6 13168334 13168373 -176111181 + L1MDa LINE L1 2526 2560 -3980 1310 231 72 19 chr6 13168373 13168749 -176110805 - MSTD LTR MaLR 0 396 1 294 213 162 78 chr6 13168749 13168889 -176110665 + L1MDa LINE L1 2560 2687 -3853 1914 142 0 24 chr6 13168889 13169201 -176110353 + AluSx SINE Alu 1 305 0 294 213 162 78 chr6 13169201 13169353 -176110201 + L1MDa LINE L1 2687 2887 -3653 349 253 18 18 chr6 13169457 13169569 -176109985 + HERVL LTR ERVL 3074 3185 -2300 778 316 132 32 chr6 13169677 13170387 -176109167 + HERVL LTR ERVL 3377 4157 -1607 527 319 19 5 chr6 13170848 13171055 -176108499 + LTR33 LTR ERVL 5 214 -307 605 257 34 6 chr6 13171098 13171273 -176108281 + LTR33 LTR ERVL 306 485 -36 922 198 11 6 chr6 13174065 13174242 -176105312 + MLT1D LTR MaLR 1 178 -327 669 67 0 0 chr6 13174242 13174331 -176105223 + L1P5 LINE L1 5453 5541 -610 1974 159 3 0 chr6 13174606 13174915 -176104639 - AluJb SINE Alu -2 310 1 288 331 96 12 chr6 13174992 13175158 -176104396 - MIR SINE MIR -71 191 12 22 0 0 0 chr6 13175203 13175225 -176104329 + AT_rich Low_complexity Low_complexity 1 22 0 904 272 128 37 chr6 13176404 13177059 -176102495 + Charlie7 DNA MER1_type 28 742 -1870 22 70 0 0 chr6 13177208 13177251 -176102303 + AT_rich Low_complexity Low_complexity 1 43 0 1270 144 95 27 chr6 13177492 13177714 -176101840 + AluJb SINE Alu 1 237 -75 700 272 118 45 chr6 13177872 13178320 -176101234 + L2 LINE L2 2832 3312 -1 278 184 20 0 chr6 13178743 13178792 -176100762 + 5S rRNA rRNA 1 50 -71 22 0 0 0 chr6 13179628 13179650 -176099904 + AT_rich Low_complexity Low_complexity 1 22 0 191 234 198 54 chr6 13180397 13180508 -176099046 - L2 LINE L2 0 3272 3146 238 0 81 0 chr6 13183638 13183675 -176095879 + A-rich Low_complexity Low_complexity 3 42 0 240 191 0 0 chr6 13183979 13184026 -176095528 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 317 235 12 24 chr6 13184627 13184712 -176094842 + MIR3 SINE MIR 109 192 -16 319 236 55 67 chr6 13185004 13185169 -176094385 - MER112 DNA MER1_type -64 196 34 381 328 0 37 chr6 13185452 13185586 -176093968 + MIR SINE MIR 22 150 -112 265 105 0 0 chr6 13185588 13185626 -176093928 + Alu SINE Alu 1 38 -263 325 94 0 57 chr6 13185743 13185796 -176093758 + AluJb SINE Alu 240 289 -11 5404 150 40 8 chr6 13185847 13187060 -176092494 + L1MA6 LINE L1 5053 6300 0 407 268 27 0 chr6 13187094 13187206 -176092348 + MIR SINE MIR 147 261 -1 5654 144 33 14 chr6 13187699 13187762 -176091792 + L1PB1 LINE L1 4340 4400 -1769 261 57 0 0 chr6 13187762 13187797 -176091757 + (CA)n Simple_repeat Simple_repeat 2 36 0 5654 144 33 14 chr6 13187797 13189526 -176090028 + L1PB1 LINE L1 4400 6169 0 378 254 79 28 chr6 13189791 13189948 -176089606 - MIR SINE MIR -40 168 3 387 334 83 21 chr6 13190151 13190678 -176088876 + L1ME4a LINE L1 5562 6121 0 2423 73 0 16 chr6 13191177 13191491 -176088063 - AluY SINE Alu 0 311 3 505 212 73 60 chr6 13193622 13193773 -176085781 + MIR SINE MIR 90 242 -20 222 118 0 0 chr6 13194170 13194204 -176085350 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 1879 184 77 5 chr6 13194306 13194709 -176084845 - MSTB1 LTR MaLR 0 432 1 252 59 0 0 chr6 13195078 13195112 -176084442 + (TC)n Simple_repeat Simple_repeat 1 34 0 611 157 38 143 chr6 13195197 13195407 -176084147 - 7SK RNA RNA -5 188 1 1916 87 4 4 chr6 13196948 13197200 -176082354 - AluSx SINE Alu -60 252 1 23 33 0 0 chr6 13197926 13197956 -176081598 + AT_rich Low_complexity Low_complexity 1 30 0 229 358 18 18 chr6 13198084 13198193 -176081361 + L3 LINE CR1 1446 1554 -23 28 0 0 0 chr6 13198233 13198261 -176081293 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr6 13198633 13198677 -176080877 + AT_rich Low_complexity Low_complexity 1 44 0 600 286 12 74 chr6 13200416 13200707 -176078847 + MIR SINE MIR 2 262 0 243 384 13 33 chr6 13200914 13201065 -176078489 + L2 LINE L2 2150 2297 -1017 929 193 16 21 chr6 13201160 13201347 -176078207 + MER5A DNA MER1_type 4 189 0 270 0 0 0 chr6 13201369 13201399 -176078155 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1953 115 4 11 chr6 13201405 13201684 -176077870 - AluSq SINE Alu -36 277 1 200 291 48 87 chr6 13202748 13202851 -176076703 - L2 LINE L2 -35 3237 3139 1780 167 35 0 chr6 13202901 13203188 -176076366 + AluJo SINE Alu 1 297 -15 1131 106 7 0 chr6 13203196 13203347 -176076207 + AluSp SINE Alu 1 152 -161 991 147 6 0 chr6 13203449 13203612 -176075942 + AluSp SINE Alu 144 307 -6 453 338 27 34 chr6 13203767 13204063 -176075491 + HAL1 LINE L1 826 1119 -1388 300 299 41 41 chr6 13204284 13204431 -176075123 + HAL1 LINE L1 2328 2474 -33 1876 172 61 50 chr6 13205794 13206254 -176073300 + MLT1C LTR MaLR 3 467 0 350 325 7 7 chr6 13206531 13206685 -176072869 - L1ME LINE L1 -420 5701 5548 911 168 22 16 chr6 13206737 13206922 -176072632 + L1MA9 LINE L1 6125 6310 -2 222 333 123 9 chr6 13207140 13207254 -176072300 + MIR SINE MIR 120 246 -16 389 251 35 88 chr6 13207507 13207653 -176071901 + MIR SINE MIR 51 188 -74 2058 231 63 19 chr6 13207653 13208194 -176071360 - MLT1F1 LTR MaLR -2 565 1 389 251 35 88 chr6 13208194 13208218 -176071336 + MIR SINE MIR 188 212 -50 354 309 66 49 chr6 13208918 13209345 -176070209 + L1M4 LINE L1 4668 5101 -1045 303 289 18 78 chr6 13209453 13209609 -176069945 - MIR SINE MIR -12 250 105 505 259 17 0 chr6 13209609 13209725 -176069829 + MER5B DNA MER1_type 2 119 -59 195 189 27 0 chr6 13209733 13209770 -176069784 - MIR SINE MIR -164 98 61 605 255 34 7 chr6 13210156 13210305 -176069249 + MIR SINE MIR 5 157 -105 1701 245 98 6 chr6 13210314 13210796 -176068758 - MLT1F LTR MaLR -16 526 1 1391 188 4 8 chr6 13210832 13211072 -176068482 - MER8 DNA MER2_type 0 239 1 325 247 21 62 chr6 13211178 13211275 -176068279 + MER5B DNA MER1_type 83 175 -3 803 202 11 22 chr6 13211331 13211509 -176068045 + MER5B DNA MER1_type 2 177 -1 192 77 0 0 chr6 13213916 13213942 -176065612 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 234 299 0 72 chr6 13214585 13214682 -176064872 - L2 LINE L2 0 3313 3224 203 255 0 20 chr6 13215676 13215727 -176063827 - MIR SINE MIR -114 148 99 253 220 0 0 chr6 13215893 13215943 -176063611 - MIR SINE MIR -74 188 139 615 206 171 0 chr6 13216597 13216743 -176062811 + MER5A DNA MER1_type 13 183 -6 2058 121 0 17 chr6 13217294 13217591 -176061963 - AluSx SINE Alu -20 292 1 243 213 12 38 chr6 13217890 13217970 -176061584 + (TG)n Simple_repeat Simple_repeat 2 79 0 216 0 0 0 chr6 13218085 13218109 -176061445 + (TG)n Simple_repeat Simple_repeat 1 24 0 267 211 21 63 chr6 13218177 13218272 -176061282 + (TG)n Simple_repeat Simple_repeat 2 92 0 1072 301 43 10 chr6 13218446 13218844 -176060710 + L2 LINE L2 2378 2788 -526 717 256 110 18 chr6 13219037 13219256 -176060298 + MIR SINE MIR 3 241 -21 471 258 113 25 chr6 13219634 13219793 -176059761 + MIR SINE MIR 40 212 -50 247 346 86 25 chr6 13220219 13220381 -176059173 + L2 LINE L2 3098 3269 -3 952 123 0 19 chr6 13221226 13221380 -176058174 + L1PA14 LINE L1 6009 6159 -2 4019 101 10 2 chr6 13221887 13222471 -176057083 + L1PA13 LINE L1 5575 6163 0 2719 253 53 19 chr6 13222484 13224257 -176055297 - L1MEc LINE L1 -3101 3114 1331 370 318 15 45 chr6 13224474 13224606 -176054948 - L2 LINE L2 -1 3271 3144 1628 190 31 34 chr6 13226574 13226959 -176052595 - MLT1B LTR MaLR 0 390 7 184 254 102 0 chr6 13227280 13227339 -176052215 + MIR SINE MIR 90 154 -108 220 376 24 0 chr6 13227792 13227877 -176051677 + MIR3 SINE MIR 111 197 -11 1295 171 15 11 chr6 13228667 13228930 -176050624 - L1MA6 LINE L1 0 6300 6037 303 364 21 30 chr6 13229153 13229389 -176050165 + L2 LINE L2 2629 2862 -452 1504 229 51 20 chr6 13230056 13230505 -176049049 + MLT1C LTR MaLR 1 463 -4 2339 90 0 23 chr6 13230757 13231067 -176048487 - AluSx SINE Alu -9 303 1 305 169 34 17 chr6 13232705 13232764 -176046790 + L3 LINE CR1 433 492 -1085 447 365 79 16 chr6 13232788 13233092 -176046462 + L3 LINE CR1 985 1307 -270 402 290 126 28 chr6 13233111 13233295 -176046259 + MIR SINE MIR 4 204 -58 220 279 150 50 chr6 13233314 13233380 -176046174 + L3 LINE CR1 1317 1375 -202 2162 93 21 0 chr6 13233380 13233671 -176045883 + AluY SINE Alu 1 297 -14 220 279 150 50 chr6 13233671 13233744 -176045810 + L3 LINE CR1 1375 1470 -107 21 0 0 0 chr6 13234341 13234362 -176045192 + AT_rich Low_complexity Low_complexity 1 21 0 327 104 0 0 chr6 13235135 13235183 -176044371 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 232 261 23 85 chr6 13235343 13235468 -176044086 - MIR SINE MIR -89 119 6 * 514 348 108 32 chr6 13235432 13235932 -176043622 + L2 LINE L2 2030 2567 -747 198 0 0 0 chr6 13236792 13236814 -176042740 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1473 120 0 10 chr6 13236820 13237029 -176042525 - AluSg/x SINE Alu -21 291 85 2190 119 3 0 chr6 13237145 13237439 -176042115 + AluSc SINE Alu 1 295 -14 263 167 0 21 chr6 13237800 13237848 -176041706 + MIR SINE MIR 65 111 -151 261 255 43 152 chr6 13237871 13238102 -176041452 - L2 LINE L2 -6 3307 3102 1027 229 188 48 chr6 13238149 13238590 -176040964 + MLT1D LTR MaLR 3 505 0 218 343 46 28 chr6 13239242 13239350 -176040204 + L2 LINE L2 3158 3267 -5 1138 284 131 81 chr6 13239535 13239978 -176039576 - L2 LINE L2 0 3313 2893 2175 99 6 43 chr6 13239978 13240300 -176039254 + AluSq SINE Alu 1 310 -3 1138 284 131 81 chr6 13240300 13240796 -176038758 - L2 LINE L2 -420 2893 2423 2136 107 40 0 chr6 13240796 13241096 -176038458 + AluSx SINE Alu 1 312 0 1138 284 131 81 chr6 13241096 13241198 -176038356 - L2 LINE L2 -890 2423 2327 1299 208 123 42 chr6 13241198 13241627 -176037927 - MLT1C LTR MaLR -2 465 2 1138 284 131 81 chr6 13241627 13241829 -176037725 - L2 LINE L2 -986 2327 1978 21 0 0 0 chr6 13241832 13241853 -176037701 + AT_rich Low_complexity Low_complexity 1 21 0 453 304 27 70 chr6 13241876 13242205 -176037349 - L2 LINE L2 -1673 1641 1327 3845 60 31 52 chr6 13242205 13243264 -176036290 - MER11A LTR ERVK 0 1266 1 695 42 11 0 chr6 13243392 13243487 -176036067 + (TAGA)n Simple_repeat Simple_repeat 3 98 0 1497 173 82 57 chr6 13243501 13243854 -176035700 + MLT1A1 LTR MaLR 2 363 -2 524 95 12 0 chr6 13243858 13243942 -176035612 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 2267 90 7 3 chr6 13244819 13245118 -176034436 - AluSg SINE Alu -10 300 1 272 196 0 0 chr6 13245295 13245341 -176034213 - L2 LINE L2 -12 3301 3256 203 130 22 22 chr6 13245530 13245576 -176033978 + (TTA)n Simple_repeat Simple_repeat 2 47 0 264 185 0 0 chr6 13245738 13245792 -176033762 + CT-rich Low_complexity Low_complexity 2 55 0 234 0 0 0 chr6 13245803 13245829 -176033725 + (CA)n Simple_repeat Simple_repeat 1 26 0 235 412 50 8 chr6 13248357 13248476 -176031078 + L2 LINE L2 3123 3246 -26 5813 112 25 4 chr6 13249596 13250552 -176029002 - L1MA5A LINE L1 -5 6292 5318 442 289 49 49 chr6 13250750 13250954 -176028600 - MER58C DNA MER1_type -1 214 11 220 208 19 0 chr6 13250986 13251039 -176028515 + (TG)n Simple_repeat Simple_repeat 1 54 0 1008 76 0 8 chr6 13251185 13251316 -176028238 - AluSq/x SINE Alu -182 130 1 28 0 0 0 chr6 13251317 13251345 -176028209 + AT_rich Low_complexity Low_complexity 1 28 0 269 325 0 4 chr6 13252628 13252730 -176026824 - MIR SINE MIR -66 142 47 296 305 78 14 chr6 13252932 13253073 -176026481 - MIR SINE MIR -74 188 39 1711 269 92 36 chr6 13253136 13254102 -176025452 + L2 LINE L2 2291 3313 0 273 206 260 0 chr6 13254571 13254644 -176024910 - MER63 DNA MER1_type -273 787 696 199 293 217 9 chr6 13254983 13255089 -176024465 + MIR SINE MIR 124 251 -11 23 0 0 0 chr6 13255337 13255360 -176024194 + AT_rich Low_complexity Low_complexity 1 23 0 219 36 0 0 chr6 13255381 13255409 -176024145 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2613 45 0 3 chr6 13255649 13255957 -176023597 + AluY SINE Alu 1 307 -4 4585 153 37 2 chr6 13257136 13258009 -176021545 - L1MA8 LINE L1 -4 6287 5385 1898 131 44 7 chr6 13258062 13258359 -176021195 + AluSq SINE Alu 1 308 -5 1038 229 95 16 chr6 13258427 13258742 -176020812 + MER2 DNA MER2_type 5 344 0 432 306 61 11 chr6 13259010 13259190 -176020364 + MIR SINE MIR 20 208 -54 831 274 98 24 chr6 13259331 13259791 -176019763 + L2 LINE L2 2820 3313 0 180 0 0 0 chr6 13259832 13259852 -176019702 + (TGGGGG)n Simple_repeat Simple_repeat 6 25 0 22 0 0 0 chr6 13260781 13260803 -176018751 + AT_rich Low_complexity Low_complexity 1 22 0 2260 85 0 0 chr6 13261321 13261626 -176017928 - AluSx SINE Alu 0 305 1 1642 179 41 10 chr6 13262852 13263142 -176016412 + AluJo SINE Alu 1 299 -13 2088 100 29 4 chr6 13263337 13263617 -176015937 + AluSq SINE Alu 11 297 -16 2115 65 0 0 chr6 13263999 13264289 -176015265 + AluY SINE Alu 35 324 0 1468 207 48 46 chr6 13264428 13264509 -176015045 - LTR40b LTR ERVL 0 462 383 2034 160 56 47 chr6 13264509 13264935 -176014619 - MSTB1 LTR MaLR 0 432 3 1468 207 48 46 chr6 13264935 13265288 -176014266 - LTR40b LTR ERVL -79 383 27 223 102 17 51 chr6 13265472 13265531 -176014023 + (TATAA)n Simple_repeat Simple_repeat 4 60 0 1039 285 8 0 chr6 13266449 13266691 -176012863 + MIR SINE MIR 19 262 0 2256 103 7 0 chr6 13266776 13267076 -176012478 + AluSx SINE Alu 1 302 -10 309 192 0 0 chr6 13267099 13267151 -176012403 + L2 LINE L2 3258 3309 -4 1900 134 66 27 chr6 13268307 13268694 -176010860 + MLT1B LTR MaLR 1 390 0 255 256 61 24 chr6 13268822 13268904 -176010650 + MIR SINE MIR 60 144 -118 387 0 0 0 chr6 13269788 13269831 -176009723 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 759 159 0 0 chr6 13269831 13269944 -176009610 - FRAM SINE Alu -32 144 32 262 382 73 33 chr6 13270583 13270884 -176008670 - L2 LINE L2 -529 2785 2473 185 331 34 54 chr6 13271467 13271615 -176007939 + MIR3 SINE MIR 1 145 -63 27 0 0 0 chr6 13272484 13272511 -176007043 + AT_rich Low_complexity Low_complexity 1 27 0 205 196 0 22 chr6 13275230 13275276 -176004278 + CT-rich Low_complexity Low_complexity 3 47 0 269 160 0 0 chr6 13276015 13276065 -176003489 - MLT1K LTR MaLR -16 572 523 436 326 103 21 chr6 13276177 13276410 -176003144 - MLT1K LTR MaLR -241 347 96 327 191 0 0 chr6 13277061 13277129 -176002425 + GA-rich Low_complexity Low_complexity 3 70 0 232 287 22 42 chr6 13277672 13277793 -176001761 - MIR SINE MIR -33 175 53 2170 107 0 0 chr6 13280435 13280757 -175998797 - AluY SINE Alu 0 311 1 512 276 74 24 chr6 13281090 13281264 -175998290 - L1ME4a LINE L1 -204 5917 5753 2116 103 0 0 chr6 13281264 13281537 -175998017 - AluSq SINE Alu 0 313 41 512 276 74 24 chr6 13281537 13281742 -175997812 - L1ME4a LINE L1 -368 5753 5519 15256 181 36 35 chr6 13282065 13283930 -175995624 + L1PA13 LINE L1 14 1876 -4938 2265 118 0 3 chr6 13283930 13284235 -175995319 + AluSx SINE Alu 1 304 -8 15256 181 36 35 chr6 13284235 13285406 -175994148 + L1PA13 LINE L1 1876 3044 -3770 619 134 179 0 chr6 13285406 13285518 -175994036 + AluY SINE Alu 1 132 -179 15256 181 36 35 chr6 13285518 13285535 -175994019 + L1PA13 LINE L1 3044 3059 -3755 207 0 0 0 chr6 13285535 13285558 -175993996 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 243 0 0 0 chr6 13285557 13285584 -175993970 + (GA)n Simple_repeat Simple_repeat 2 28 0 15256 181 36 35 chr6 13285558 13289179 -175990375 + L1PA13 LINE L1 3059 6814 0 24 53 0 0 chr6 13289201 13289239 -175990315 + AT_rich Low_complexity Low_complexity 1 38 0 4987 136 48 14 chr6 13289666 13291297 -175988257 + L1PA16 LINE L1 4518 6166 0 1111 279 11 63 chr6 13291318 13291763 -175987791 + L2 LINE L2 2892 3313 0 1960 119 0 11 chr6 13291938 13292253 -175987301 - AluSx SINE Alu 0 314 3 447 278 149 26 chr6 13292277 13292471 -175987083 + MIR SINE MIR 37 254 -8 386 324 7 7 chr6 13292812 13292951 -175986603 - MIR SINE MIR -110 152 14 312 133 0 33 chr6 13297040 13297100 -175982454 + THE1C LTR MaLR 1 58 -317 259 200 0 0 chr6 13297105 13297160 -175982394 + THE1C LTR MaLR 10 64 -311 2031 144 17 17 chr6 13297161 13297514 -175982040 + THE1C LTR MaLR 23 375 0 306 0 0 0 chr6 13297988 13298022 -175981532 + (TG)n Simple_repeat Simple_repeat 2 35 0 724 103 8 8 chr6 13298163 13298280 -175981274 - L1PA13 LINE L1 0 6163 6047 3231 81 31 2 chr6 13298398 13298878 -175980676 - L1PA13 LINE L1 -85 6078 5585 465 295 72 21 chr6 13298925 13299118 -175980436 + MIR SINE MIR 44 246 -16 4998 160 14 30 chr6 13299346 13300717 -175978837 + L1MA7 LINE L1 4762 6153 -138 2293 106 0 0 chr6 13300717 13301010 -175978544 + AluSc SINE Alu 1 293 -16 216 97 0 0 chr6 13301011 13301042 -175978512 + (CA)n Simple_repeat Simple_repeat 2 32 0 4998 160 14 30 chr6 13301042 13301217 -175978337 + L1MA7 LINE L1 6152 6291 0 549 44 0 0 chr6 13302513 13302581 -175976973 + (CA)n Simple_repeat Simple_repeat 1 68 0 1984 161 7 0 chr6 13303952 13304251 -175975303 + AluJb SINE Alu 3 303 -9 205 268 0 18 chr6 13304599 13304655 -175974899 + GA-rich Low_complexity Low_complexity 5 59 0 4981 94 16 9 chr6 13305816 13306578 -175972976 + L1MA1 LINE L1 5265 6031 -271 1733 75 31 4 chr6 13306678 13306932 -175972622 + L1MA1 LINE L1 6042 6302 0 23 0 0 0 chr6 13306932 13306955 -175972599 + AT_rich Low_complexity Low_complexity 1 23 0 1773 157 7 4 chr6 13307376 13307657 -175971897 + AluJo SINE Alu 1 282 -30 203 152 0 0 chr6 13307659 13307692 -175971862 + GA-rich Low_complexity Low_complexity 2 34 0 237 108 0 0 chr6 13307695 13307732 -175971822 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 184 266 127 13 chr6 13307952 13308031 -175971523 + L2 LINE L2 2442 2529 -785 29 60 0 0 chr6 13308343 13308393 -175971161 + AT_rich Low_complexity Low_complexity 1 50 0 420 303 118 56 chr6 13308460 13308817 -175970737 - L1MC4a LINE L1 -1719 6089 5711 722 167 8 0 chr6 13308827 13308947 -175970607 + FLAM_C SINE Alu 2 122 -11 21 0 0 0 chr6 13308947 13308968 -175970586 + AT_rich Low_complexity Low_complexity 1 21 0 299 246 123 35 chr6 13308986 13309157 -175970397 - L1MC4a LINE L1 -458 5663 5478 2162 97 35 0 chr6 13310088 13310377 -175969177 - AluY SINE Alu -12 299 1 9447 175 11 10 chr6 13310461 13312752 -175966802 - L1PA15 LINE L1 0 6165 3873 192 40 0 0 chr6 13312752 13312777 -175966777 + (TTG)n Simple_repeat Simple_repeat 2 26 0 9447 175 11 10 chr6 13312777 13313388 -175966166 - L1PA15 LINE L1 -2292 3873 3264 1025 232 9 0 chr6 13313456 13313667 -175965887 - MER45C DNA AcHobo -740 213 1 338 286 53 8 chr6 13313671 13313804 -175965750 + MIR SINE MIR 84 222 -40 235 328 148 8 chr6 13314029 13314157 -175965397 - MER5A DNA MER1_type -1 188 43 * 253 293 53 13 chr6 13314098 13314173 -175965381 + MER5A DNA MER1_type 101 178 -11 350 237 40 0 chr6 13314230 13314306 -175965248 - MER2 DNA MER2_type 0 345 267 1056 174 46 0 chr6 13314333 13314529 -175965025 - MER2 DNA MER2_type -137 208 4 2034 191 95 35 chr6 13314585 13315047 -175964507 + LTR2B LTR ERV1 1 490 0 287 259 12 12 chr6 13315055 13315140 -175964414 - L1MC4 LINE L1 -138 7904 7820 2298 101 3 0 chr6 13315152 13315450 -175964104 + AluSp SINE Alu 1 299 -14 3134 202 58 52 chr6 13315483 13316424 -175963130 - L1ME2 LINE L1 -9 6155 5222 198 0 0 0 chr6 13316424 13316446 -175963108 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2301 77 0 0 chr6 13316449 13316735 -175962819 - AluSx SINE Alu -26 286 1 3134 202 58 52 chr6 13316735 13316802 -175962752 - L1ME2 LINE L1 -943 5221 5136 733 240 18 18 chr6 13318107 13318278 -175961276 - MER5A DNA MER1_type 0 189 19 1623 170 19 4 chr6 13369585 13369856 -175909698 - AluJo SINE Alu -37 275 1 337 310 62 35 chr6 13369907 13370532 -175909022 + L1ME3A LINE L1 4272 4913 -1233 626 216 49 56 chr6 13370811 13371117 -175908437 + L1ME3A LINE L1 5264 5567 -603 1637 152 7 55 chr6 13371117 13371263 -175908291 + AluJb SINE Alu 1 126 -186 2571 49 3 0 chr6 13371263 13371568 -175907986 + AluY SINE Alu 1 306 -5 1637 152 7 55 chr6 13371568 13371730 -175907824 + AluJb SINE Alu 126 294 -18 245 320 12 12 chr6 13371743 13371915 -175907639 + L1ME3A LINE L1 5785 5956 -214 2489 57 3 7 chr6 13372117 13372417 -175907137 - AluY SINE Alu -12 299 1 853 124 0 0 chr6 13373496 13373625 -175905929 - L1MA1 LINE L1 0 6302 6174 3504 179 26 9 chr6 13373990 13374689 -175904865 - MER50 LTR ERV1 -23 711 1 259 189 19 0 chr6 13374689 13374742 -175904812 - MER94 DNA DNA -78 56 3 241 286 14 14 chr6 13377164 13377234 -175902320 - L2 LINE L2 -14 3258 3189 193 352 40 40 chr6 13377444 13377569 -175901985 + L2 LINE L2 1342 1466 -1848 301 300 121 63 chr6 13377823 13378170 -175901384 + L2 LINE L2 1828 2194 -1120 631 303 46 26 chr6 13378183 13378490 -175901064 + L2 LINE L2 2475 2787 -527 184 350 82 0 chr6 13379855 13379952 -175899602 + MIR SINE MIR 76 180 -82 1507 279 78 42 chr6 13380042 13380138 -175899416 - L2 LINE L2 0 3313 3222 1242 121 0 0 chr6 13380138 13380312 -175899242 + L1PA16 LINE L1 5979 6152 -14 1507 279 78 42 chr6 13380312 13381090 -175898464 - L2 LINE L2 -91 3222 2411 201 226 77 29 chr6 13381358 13381428 -175898126 - MIR SINE MIR -63 145 79 221 300 54 39 chr6 13382369 13382499 -175897055 + MIR3 SINE MIR 4 135 -73 330 26 0 0 chr6 13382912 13382951 -175896603 + (CA)n Simple_repeat Simple_repeat 2 40 0 570 270 115 40 chr6 13383139 13383339 -175896215 + MIR SINE MIR 48 262 0 180 209 47 0 chr6 13383850 13383893 -175895661 - L2 LINE L2 -15 3257 3213 26 0 0 0 chr6 13384396 13384422 -175895132 + AT_rich Low_complexity Low_complexity 1 26 0 290 217 19 28 chr6 13385007 13385113 -175894441 + T-rich Low_complexity Low_complexity 1 105 0 249 57 0 0 chr6 13387648 13387683 -175891871 + (CA)n Simple_repeat Simple_repeat 2 36 0 1495 168 58 45 chr6 13387868 13388160 -175891394 - AluJo SINE Alu -16 296 1 224 251 99 89 chr6 13389192 13389383 -175890171 + MIR SINE MIR 14 206 -56 2323 236 71 24 chr6 13390289 13390633 -175888921 + L1ME2 LINE L1 5069 5396 -768 2014 145 0 0 chr6 13390633 13390929 -175888625 - AluJb SINE Alu -16 296 1 2323 236 71 24 chr6 13390929 13391566 -175887988 + L1ME2 LINE L1 5396 6100 -64 936 300 53 34 chr6 13391580 13392106 -175887448 + L1ME LINE L1 7 542 -5528 974 259 44 33 chr6 13392110 13392729 -175886825 + L1ME LINE L1 589 1192 -4888 234 227 13 13 chr6 13392725 13392800 -175886754 + L1MC5 LINE L1 7843 7917 -44 * 2144 111 11 0 chr6 13394742 13395063 -175884491 + AluSx SINE Alu 1 324 0 590 322 74 41 chr6 13395302 13395842 -175883712 + HAL1 LINE L1 154 711 -1796 526 239 111 86 chr6 13395951 13396149 -175883405 - MLT1J1 LTR MaLR -135 311 105 2427 93 0 13 chr6 13396149 13396461 -175883093 - AluSx SINE Alu -4 308 1 526 239 111 86 chr6 13396461 13396496 -175883058 - MLT1J1 LTR MaLR -341 105 72 262 261 94 11 chr6 13396642 13396822 -175882732 + HAL1 LINE L1 1003 1197 -1310 932 264 64 55 chr6 13396845 13397059 -175882495 + HAL1 LINE L1 1506 1716 -791 2759 26 0 0 chr6 13397059 13397372 -175882182 + AluYb8 SINE Alu 1 313 -5 932 264 64 55 chr6 13397372 13397668 -175881886 + HAL1 LINE L1 1716 2026 -481 843 131 6 86 chr6 13397668 13397713 -175881841 + L1PB2 LINE L1 5991 6038 -113 2001 108 15 0 chr6 13397713 13397982 -175881572 + AluSg SINE Alu 22 294 -16 843 131 6 86 chr6 13397982 13398111 -175881443 + L1PB2 LINE L1 6038 6151 0 932 264 64 55 chr6 13398111 13398221 -175881333 + HAL1 LINE L1 2026 2133 -374 1127 286 94 24 chr6 13398251 13398719 -175880835 - MLT1E LTR MaLR -92 501 1 401 222 57 57 chr6 13398806 13398982 -175880572 + HAL1 LINE L1 2225 2400 -107 31 26 0 0 chr6 13399028 13399066 -175880488 + AT_rich Low_complexity Low_complexity 1 38 0 1024 149 0 24 chr6 13399125 13399293 -175880261 + AluSg/x SINE Alu 122 285 -27 311 233 113 75 chr6 13400218 13400351 -175879203 - MIR SINE MIR -55 153 16 25 0 0 0 chr6 13400403 13400428 -175879126 + AT_rich Low_complexity Low_complexity 1 25 0 2418 170 15 37 chr6 13400447 13400982 -175878572 + L1MB8 LINE L1 5654 6176 -2 858 110 26 0 chr6 13401360 13401501 -175878053 - THE1C LTR MaLR 0 375 243 723 22 11 0 chr6 13401502 13401593 -175877961 - L1PA4 LINE L1 -199 5955 5864 1666 34 24 0 chr6 13401593 13401789 -175877765 + L1PA4 LINE L1 5942 6154 -1 811 131 91 107 chr6 13401794 13402046 -175877508 - THE1C LTR MaLR -127 248 1 254 278 0 0 chr6 13402060 13402114 -175877440 - L2 LINE L2 -16 3256 3203 319 329 7 7 chr6 13403359 13403499 -175876055 + (TA)n Simple_repeat Simple_repeat 1 140 0 734 265 22 0 chr6 13403622 13403807 -175875747 + MIR SINE MIR 70 258 -4 212 178 44 0 chr6 13403868 13403913 -175875641 + (TG)n Simple_repeat Simple_repeat 2 48 0 * 219 204 20 0 chr6 13403884 13403933 -175875621 + (TA)n Simple_repeat Simple_repeat 1 50 0 252 0 0 0 chr6 13404105 13404133 -175875421 + (TA)n Simple_repeat Simple_repeat 1 28 0 2707 120 24 54 chr6 13404147 13404609 -175874945 + L1MA9 LINE L1 5789 6263 -49 1680 185 21 0 chr6 13404609 13404949 -175874605 + L1MA6 LINE L1 5950 6296 -4 2707 120 24 54 chr6 13404949 13404976 -175874578 + L1MA9 LINE L1 6263 6263 -49 2287 109 3 0 chr6 13404976 13405279 -175874275 - AluSc SINE Alu -5 304 1 2707 120 24 54 chr6 13405279 13405328 -175874226 + L1MA9 LINE L1 6263 6312 0 4101 137 19 11 chr6 13405461 13406155 -175873399 + L1PA16 LINE L1 5468 6166 0 351 262 24 0 chr6 13407196 13407280 -175872274 + MIR SINE MIR 64 149 -113 684 67 0 0 chr6 13408525 13408615 -175870939 + (TTCC)n Simple_repeat Simple_repeat 1 90 0 643 180 117 0 chr6 13408615 13408743 -175870811 - FAM SINE Alu -31 154 12 2304 105 0 3 chr6 13408942 13409248 -175870306 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr6 13409248 13409269 -175870285 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr6 13409871 13409906 -175869648 + AT_rich Low_complexity Low_complexity 1 35 0 2062 127 0 0 chr6 13410037 13410354 -175869200 + AluSg SINE Alu 1 317 0 2062 147 0 19 chr6 13411318 13411631 -175867923 - AluJo SINE Alu -5 307 1 308 235 0 12 chr6 13412595 13412676 -175866878 + MER116 DNA Mariner 1 80 0 225 0 0 0 chr6 13412881 13412906 -175866648 + (A)n Simple_repeat Simple_repeat 1 25 0 8898 102 6 3 chr6 13412906 13415384 -175864170 - L1PA8A LINE L1 -27 6104 3620 704 202 38 11 chr6 13415635 13415818 -175863736 + MER53 DNA DNA 2 189 0 250 273 61 10 chr6 13415823 13415922 -175863632 - MER117 DNA MER1_type -91 106 3 24 85 0 0 chr6 13417171 13417230 -175862324 + AT_rich Low_complexity Low_complexity 1 59 0 551 291 45 17 chr6 13417381 13417560 -175861994 - MIR SINE MIR -51 211 28 391 293 87 41 chr6 13417560 13417952 -175861602 - L1ME4a LINE L1 -206 5915 5506 887 238 0 0 chr6 13418987 13419159 -175860395 + AluJb SINE Alu 115 286 -26 1595 50 0 0 chr6 13419427 13419626 -175859928 + L1PA7 LINE L1 5950 6148 -6 321 276 105 20 chr6 13419777 13419929 -175859625 + L1ME4a LINE L1 5956 6120 -1 2462 233 55 25 chr6 13419942 13421201 -175858353 - L1ME2 LINE L1 -7 6157 4857 2168 105 7 17 chr6 13421212 13421508 -175858046 + AluSc SINE Alu 1 293 -16 5083 75 3 1 chr6 13421597 13422266 -175857288 - L1PA7 LINE L1 -3 6151 5482 405 293 66 98 chr6 13422346 13422608 -175856946 + L3 LINE CR1 1250 1501 -76 8802 74 5 0 chr6 13422608 13424573 -175854981 + L1PA7 LINE L1 4199 6164 0 405 293 66 98 chr6 13424573 13424644 -175854910 + L3 LINE CR1 1501 1573 -4 26 0 0 0 chr6 13425159 13425185 -175854369 + AT_rich Low_complexity Low_complexity 1 26 0 636 283 72 45 chr6 13425305 13425542 -175854012 + MLT1H LTR MaLR 9 259 -290 2131 153 80 10 chr6 13425542 13425942 -175853612 + MSTA LTR MaLR 1 428 0 636 283 72 45 chr6 13425942 13426036 -175853518 + MLT1H LTR MaLR 259 349 -200 202 299 47 0 chr6 13427283 13427410 -175852144 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 21 0 0 0 chr6 13427506 13427527 -175852027 + AT_rich Low_complexity Low_complexity 1 21 0 1665 176 6 56 chr6 13427605 13427929 -175851625 - AluJb SINE Alu 0 312 5 242 326 51 25 chr6 13429078 13429274 -175850280 + L1MC4a LINE L1 5743 5943 -1865 457 268 49 19 chr6 13429344 13429674 -175849880 - L1MEd LINE L1 -4865 1254 1010 206 183 17 17 chr6 13430137 13430197 -175849357 + A-rich Low_complexity Low_complexity 4 63 0 562 293 12 35 chr6 13430728 13430987 -175848567 + HAL1 LINE L1 115 367 -2140 * 3663 159 58 25 chr6 13430979 13431785 -175847769 + L1MB7 LINE L1 5352 6184 0 713 80 10 0 chr6 13431794 13431894 -175847660 + L1PA7 LINE L1 6051 6151 -3 1279 266 51 27 chr6 13431937 13432449 -175847105 + HAL1 LINE L1 1356 1879 -628 291 130 0 0 chr6 13432829 13432883 -175846671 - Alu SINE Alu -2 300 247 924 149 0 14 chr6 13432883 13433031 -175846523 - AluJo SINE Alu -166 146 1 1680 141 6 74 chr6 13433099 13433411 -175846143 + AluJb SINE Alu 1 291 -21 198 0 0 0 chr6 13433411 13433433 -175846121 + (GA)n Simple_repeat Simple_repeat 2 23 0 397 181 21 0 chr6 13434131 13434225 -175845329 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 898 112 22 17 chr6 13434237 13434416 -175845138 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1965 239 26 24 chr6 13434490 13435030 -175844524 + MER77 LTR ERV1 58 598 -7 836 305 31 42 chr6 13435286 13435831 -175843723 + HAL1b LINE L1 434 972 -376 611 249 40 12 chr6 13435883 13436056 -175843498 - MIR SINE MIR -26 236 59 366 263 88 5 chr6 13436113 13436318 -175843236 + HAL1b LINE L1 1074 1295 -53 31 0 0 0 chr6 13436349 13436380 -175843174 + AT_rich Low_complexity Low_complexity 1 31 0 343 329 93 23 chr6 13436420 13436730 -175842824 + L1ME4a LINE L1 5784 6115 -6 342 280 19 9 chr6 13437128 13437235 -175842319 + MER5A DNA MER1_type 9 116 -73 30 83 0 0 chr6 13437802 13437874 -175841680 + AT_rich Low_complexity Low_complexity 1 72 0 192 232 89 0 chr6 13438217 13438273 -175841281 - MIR SINE MIR -114 148 88 302 218 73 73 chr6 13438455 13438579 -175840975 + L1ME2 LINE L1 5950 6073 -91 226 186 113 41 chr6 13438584 13438681 -175840873 + L1MC4 LINE L1 7924 8027 -15 27 62 0 0 chr6 13438690 13438738 -175840816 + AT_rich Low_complexity Low_complexity 1 48 0 2385 84 3 3 chr6 13439179 13439489 -175840065 - AluSx SINE Alu 0 312 3 2195 117 10 0 chr6 13439777 13440084 -175839470 + AluSx SINE Alu 1 310 -2 2236 86 7 0 chr6 13440880 13441184 -175838370 - AluSx SINE Alu -6 306 1 21 0 0 0 chr6 13442171 13442192 -175837362 + AT_rich Low_complexity Low_complexity 1 21 0 535 299 90 80 chr6 13442264 13442535 -175837019 + L1M4 LINE L1 2141 2408 -3738 2331 100 0 0 chr6 13442535 13442834 -175836720 + AluSg SINE Alu 1 299 -11 535 299 90 80 chr6 13442834 13443272 -175836282 + L1M4 LINE L1 2408 2857 -3289 248 163 73 49 chr6 13443383 13443506 -175836048 + Charlie7 DNA MER1_type 2420 2545 -67 1375 221 22 56 chr6 13443571 13443925 -175835629 - MLT1C LTR MaLR 0 467 130 2860 3 0 0 chr6 13443925 13444234 -175835320 - AluYa5 SINE Alu -2 309 1 1375 221 22 56 chr6 13444234 13444328 -175835226 - MLT1C LTR MaLR -337 130 34 186 103 0 0 chr6 13445649 13445678 -175833876 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 171 49 0 chr6 13445682 13445723 -175833831 - L2 LINE L2 -38 3234 3192 345 348 15 7 chr6 13446234 13446369 -175833185 + HAL1b LINE L1 454 589 -759 29 0 0 0 chr6 13446805 13446834 -175832720 + AT_rich Low_complexity Low_complexity 1 29 0 258 317 49 54 chr6 13446917 13447122 -175832432 + LTR67 LTR ERVL 114 317 -240 2735 73 98 5 chr6 13447125 13447535 -175832019 + LTR7 LTR ERV1 1 448 -2 16198 99 30 12 chr6 13447537 13450717 -175828837 + HERVH LTR ERV1 1 2987 -4726 822 142 20 0 chr6 13450711 13450859 -175828695 + HERVH LTR ERV1 3140 3290 -4423 * 3266 95 4 4 chr6 13450858 13451352 -175828202 + HERVH LTR ERV1 3500 3993 -3720 4326 125 0 1 chr6 13451354 13452017 -175827537 + HERVH LTR ERV1 4488 5149 -2564 1371 116 19 0 chr6 13452018 13452234 -175827320 + HERVH LTR ERV1 5600 5819 -1894 2268 93 48 13 chr6 13452234 13452611 -175826943 + HERVH LTR ERV1 7324 7713 0 1885 102 8 8 chr6 13452611 13452970 -175826584 + LTR7 LTR ERV1 1 448 -2 356 341 62 0 chr6 13454158 13454287 -175825267 - L2 LINE L2 -2 3270 3134 2195 117 0 19 chr6 13454458 13454766 -175824788 + AluSg SINE Alu 1 302 -8 222 137 59 0 chr6 13454781 13454832 -175824722 + A-rich Low_complexity Low_complexity 2 55 0 238 302 220 17 chr6 13455434 13455907 -175823647 - L2 LINE L2 -1018 2296 1728 2385 113 5 35 chr6 13456651 13457024 -175822530 + THE1B LTR MaLR 3 364 0 606 122 0 0 chr6 13457090 13457188 -175822366 + (TCCC)n Simple_repeat Simple_repeat 1 98 0 1425 182 35 42 chr6 13457188 13457474 -175822080 - AluJo SINE Alu -28 284 1 2242 100 0 0 chr6 13458750 13459031 -175820523 + AluSx SINE Alu 5 288 -24 234 0 0 0 chr6 13459031 13459057 -175820497 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 637 130 0 37 chr6 13459359 13459467 -175820087 + FLAM_A SINE Alu 20 123 -19 847 209 13 0 chr6 13459864 13460049 -175819505 - AluJb SINE Alu 0 309 123 252 0 0 0 chr6 13460057 13460085 -175819469 + (TA)n Simple_repeat Simple_repeat 2 29 0 899 143 7 0 chr6 13460095 13460235 -175819319 - FLAM_C SINE Alu 0 143 3 359 276 176 19 chr6 13460500 13460761 -175818793 - L2 LINE L2 -731 2583 2282 318 132 0 0 chr6 13460764 13460817 -175818737 + (CA)n Simple_repeat Simple_repeat 2 54 0 268 200 44 33 chr6 13460824 13460914 -175818640 + L1MC4 LINE L1 6613 6703 -1339 226 156 0 0 chr6 13460894 13460939 -175818615 - L1MC4 LINE L1 -1339 6703 6659 * 369 357 31 16 chr6 13461007 13461262 -175818292 - L2 LINE L2 -1063 2251 1993 1916 154 3 0 chr6 13462079 13462364 -175817190 + AluSx SINE Alu 1 286 -26 393 338 49 63 chr6 13462618 13462902 -175816652 + HAL1b LINE L1 63 342 -1006 873 136 21 29 chr6 13463511 13463651 -175815903 - FRAM SINE Alu -18 158 20 598 175 9 0 chr6 13463678 13463792 -175815762 - MER20 DNA MER1_type -48 171 57 2435 83 62 10 chr6 13463792 13464176 -175815378 + MLT2A1 LTR ERVL 1 404 -40 372 150 0 0 chr6 13464176 13464256 -175815298 + (TA)n Simple_repeat Simple_repeat 2 81 0 211 234 11 11 chr6 13464378 13464472 -175815082 + (TA)n Simple_repeat Simple_repeat 1 94 0 2152 98 4 0 chr6 13464493 13464767 -175814787 + AluSx SINE Alu 16 290 -22 230 271 10 52 chr6 13464767 13464863 -175814691 + L1MC5 LINE L1 6647 6738 -1223 2191 116 10 7 chr6 13464866 13465176 -175814378 + AluSx SINE Alu 1 311 -1 243 0 0 0 chr6 13465185 13465212 -175814342 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 1740 181 3 26 chr6 13465217 13465526 -175814028 + AluJo SINE Alu 3 304 -8 1818 220 55 80 chr6 13465527 13466341 -175813213 + L1MC5 LINE L1 6735 7528 -433 250 241 65 9 chr6 13466497 13466605 -175812949 + L1ME3A LINE L1 6027 6140 -30 995 194 0 0 chr6 13466608 13466788 -175812766 - AluJo SINE Alu -6 306 127 316 326 170 0 chr6 13466912 13467136 -175812418 - L2 LINE L2 -1414 1900 1639 2302 231 111 56 chr6 13467138 13467832 -175811722 + L1MC4 LINE L1 6935 7708 -334 3667 122 2 24 chr6 13467832 13468420 -175811134 + L1PA14 LINE L1 5578 6152 -9 2302 231 111 56 chr6 13468420 13468775 -175810779 + L1MC4 LINE L1 7708 8042 0 192 351 33 26 chr6 13468781 13468932 -175810622 - L2 LINE L2 -1692 1622 1471 401 47 0 31 chr6 13471809 13471873 -175807681 - L1PA7 LINE L1 0 6154 6093 300 53 0 0 chr6 13471899 13471937 -175807617 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 220 286 54 0 chr6 13472931 13472987 -175806567 - L2 LINE L2 0 3272 3214 271 321 15 30 chr6 13475434 13475568 -175803986 - L2 LINE L2 -954 2360 2229 690 243 18 72 chr6 13475576 13475821 -175803733 - MIR SINE MIR 0 262 30 254 290 129 32 chr6 13476009 13476164 -175803390 + MIR SINE MIR 82 251 -11 1301 206 83 31 chr6 13476480 13476806 -175802748 + MER2 DNA MER2_type 2 344 0 25 51 0 0 chr6 13477259 13477298 -175802256 + AT_rich Low_complexity Low_complexity 1 39 0 3748 29 9 0 chr6 13477323 13477766 -175801788 - L1PA3 LINE L1 0 6155 5709 2281 135 10 20 chr6 13477814 13478255 -175801299 + Tigger2 DNA MER2_type 3 2718 0 2282 109 0 0 chr6 13478629 13478931 -175800623 - AluY SINE Alu -9 302 1 25 31 0 0 chr6 13479059 13479091 -175800463 + AT_rich Low_complexity Low_complexity 1 32 0 578 265 12 18 chr6 13479143 13479309 -175800245 + MER5B DNA MER1_type 14 178 0 1095 199 5 24 chr6 13479439 13479650 -175799904 + AluJo SINE Alu 82 288 -24 22 80 0 0 chr6 13479650 13479700 -175799854 + AT_rich Low_complexity Low_complexity 1 50 0 341 164 87 39 chr6 13479701 13479805 -175799749 - MER5A DNA MER1_type -77 112 4 202 259 129 118 chr6 13479836 13480006 -175799548 - MER5B DNA MER1_type -3 175 4 283 337 89 11 chr6 13480568 13480758 -175798796 + L2 LINE L2 2184 2388 -926 188 386 79 35 chr6 13480853 13481055 -175798499 + L2 LINE L2 2814 3024 -248 246 226 0 0 chr6 13482553 13482606 -175796948 - MER116 DNA Mariner -27 53 1 23 0 0 0 chr6 13482861 13482884 -175796670 + AT_rich Low_complexity Low_complexity 1 23 0 4220 202 27 14 chr6 13483753 13484803 -175794751 + L1MB3 LINE L1 4125 5187 -959 1111 158 14 38 chr6 13484803 13485012 -175794542 + AluJb SINE Alu 108 311 -1 690 123 29 14 chr6 13485013 13485151 -175794403 + GA-rich Low_complexity Low_complexity 4 143 0 5030 120 52 8 chr6 13485157 13486107 -175793447 + L1PA16 LINE L1 5180 6165 -1 423 241 25 49 chr6 13486151 13486198 -175793356 - L1MA10 LINE L1 -7 6327 6281 2870 214 63 18 chr6 13486198 13487113 -175792441 - L1ME1 LINE L1 -44 6122 5173 1317 181 16 0 chr6 13487234 13487482 -175792072 + L1MB3 LINE L1 5447 5698 -473 488 184 10 0 chr6 13487482 13487566 -175791988 + L1MB3 LINE L1 6076 6179 -4 203 373 119 16 chr6 13487731 13487857 -175791697 + MIR3 SINE MIR 41 179 -29 302 285 93 14 chr6 13488095 13488235 -175791319 + MIR SINE MIR 71 220 -42 395 263 188 25 chr6 13488289 13488449 -175791105 - MER5A DNA MER1_type 0 189 4 190 329 13 13 chr6 13488619 13488695 -175790859 - MIR3 SINE MIR -52 156 81 254 287 102 9 chr6 13490505 13490613 -175788941 + L2 LINE L2 3191 3308 -5 860 153 0 45 chr6 13490714 13490871 -175788683 - AluJb SINE Alu -26 286 137 357 274 0 0 chr6 13491172 13491256 -175788298 - MIR SINE MIR -1 261 178 183 255 43 0 chr6 13491517 13491564 -175787990 - MIR SINE MIR -109 153 105 329 107 0 18 chr6 13492428 13492484 -175787070 + (GA)n Simple_repeat Simple_repeat 2 56 0 669 159 9 0 chr6 13493523 13493630 -175785924 + FLAM_C SINE Alu 11 118 -25 24 0 0 0 chr6 13494480 13494504 -175785050 + AT_rich Low_complexity Low_complexity 1 24 0 2245 126 3 3 chr6 13494954 13495264 -175784290 - AluSx SINE Alu -2 310 1 186 43 0 0 chr6 13495523 13495546 -175784008 + (TC)n Simple_repeat Simple_repeat 1 23 0 247 271 14 14 chr6 13500670 13500740 -175778814 + MER5A DNA MER1_type 85 154 -35 451 234 27 0 chr6 13500877 13500988 -175778566 + MIR SINE MIR 128 241 -21 2190 100 14 0 chr6 13501059 13501348 -175778206 + AluSx SINE Alu 1 293 -19 240 292 25 67 chr6 13503085 13503205 -175776349 + MER5A DNA MER1_type 73 187 -2 546 200 200 52 chr6 13503231 13503386 -175776168 + MER5A DNA MER1_type 9 186 -3 1585 159 32 28 chr6 13503439 13503722 -175775832 - AluJo SINE Alu -8 304 21 532 245 28 14 chr6 13503724 13503867 -175775687 + MER5B DNA MER1_type 34 178 0 2250 106 3 16 chr6 13504006 13504317 -175775237 + AluSx SINE Alu 6 312 0 343 369 58 15 chr6 13504320 13504526 -175775028 - MIR SINE MIR -28 234 20 180 209 0 75 chr6 13505336 13505403 -175774151 + L2 LINE L2 3003 3064 -208 406 358 31 0 chr6 13505466 13505628 -175773926 + MIR SINE MIR 58 224 -38 33 43 0 0 chr6 13505819 13505866 -175773688 + AT_rich Low_complexity Low_complexity 1 47 0 239 374 108 36 chr6 13505911 13506272 -175773282 + L3b LINE CR1 1148 1534 -49 222 122 41 20 chr6 13506969 13507018 -175772536 + T-rich Low_complexity Low_complexity 2 51 0 204 280 0 0 chr6 13507458 13507508 -175772046 + GA-rich Low_complexity Low_complexity 1 50 0 1782 171 7 23 chr6 13507985 13508295 -175771259 + AluJo SINE Alu 1 305 -7 26 0 0 0 chr6 13508370 13508396 -175771158 + AT_rich Low_complexity Low_complexity 1 26 0 608 285 21 21 chr6 13508437 13508623 -175770931 + MIR SINE MIR 6 191 -71 323 255 9 9 chr6 13508821 13508927 -175770627 - MER113 DNA MER1_type? -413 108 3 352 359 93 40 chr6 13509498 13510078 -175769476 - L2 LINE L2 -452 2862 2252 2609 84 24 16 chr6 13510561 13510942 -175768612 - L1PA13 LINE L1 -11 6152 5769 423 0 0 0 chr6 13510942 13510989 -175768565 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2275 86 0 0 chr6 13510989 13511269 -175768285 - AluSg SINE Alu -30 280 1 382 309 48 17 chr6 13511534 13511715 -175767839 - MIR SINE MIR -37 225 41 2632 77 0 0 chr6 13512308 13512645 -175766909 - L1PA8A LINE L1 -3 6128 5792 303 261 136 11 chr6 13513160 13513248 -175766306 - MIR3 SINE MIR -1 207 109 406 313 129 5 chr6 13513259 13513460 -175766094 - MIR SINE MIR -6 256 31 187 307 59 59 chr6 13513485 13513586 -175765968 - MIR SINE MIR -91 117 17 439 270 61 61 chr6 13514066 13514296 -175765258 - MIR SINE MIR -6 256 27 370 358 150 9 chr6 13514316 13514542 -175765012 - MIR SINE MIR -4 258 1 2235 212 79 8 chr6 13514905 13515409 -175764145 - MLT1F LTR MaLR -2 540 1 27 49 0 0 chr6 13516654 13516695 -175762859 + AT_rich Low_complexity Low_complexity 1 41 0 273 83 0 0 chr6 13516755 13516791 -175762763 + U2 snRNA snRNA 1 36 -152 240 111 0 0 chr6 13516943 13516979 -175762575 + (TA)n Simple_repeat Simple_repeat 1 36 0 1757 170 68 0 chr6 13517000 13517323 -175762231 - MER7A DNA MER2_type 0 346 4 234 91 0 0 chr6 13517354 13517387 -175762167 + (CA)n Simple_repeat Simple_repeat 2 34 0 1500 254 96 83 chr6 13517466 13517538 -175762016 - L1MC4 LINE L1 -121 7921 7851 1819 166 36 10 chr6 13517538 13517840 -175761714 - AluJo SINE Alu -2 310 1 1500 254 96 83 chr6 13517840 13518536 -175761018 - L1MC4 LINE L1 -191 7851 7135 2195 110 0 7 chr6 13518536 13518845 -175760709 + AluSq SINE Alu 1 307 -6 1500 254 96 83 chr6 13518845 13519068 -175760486 - L1MC4 LINE L1 -907 7135 6916 22 0 0 0 chr6 13519478 13519500 -175760054 + AT_rich Low_complexity Low_complexity 1 22 0 1488 178 14 21 chr6 13519500 13519786 -175759768 - AluJo SINE Alu -17 295 12 1507 244 135 34 chr6 13519800 13520673 -175758881 - L1ME2 LINE L1 0 6164 5176 203 278 12 118 chr6 13522118 13522287 -175757267 + MIR3 SINE MIR 37 187 -21 3541 106 32 4 chr6 13522326 13522863 -175756691 + MER41A LTR ERV1 3 554 0 221 328 74 70 chr6 13522975 13523122 -175756432 - MIR SINE MIR 0 262 112 2458 70 0 7 chr6 13523122 13523423 -175756131 - AluSx SINE Alu -13 299 1 221 328 74 70 chr6 13523423 13523519 -175756035 - MIR SINE MIR -150 112 18 650 216 0 0 chr6 13523929 13524045 -175755509 + FLAM_A SINE Alu 1 116 -17 629 258 121 31 chr6 13524067 13524578 -175754976 + L1M4 LINE L1 2961 3517 -2629 567 299 13 47 chr6 13524602 13525068 -175754486 + L1M4 LINE L1 3572 4160 -1986 720 144 18 0 chr6 13525133 13525244 -175754310 - FRAM SINE Alu -27 149 37 2183 107 3 0 chr6 13575262 13575551 -175704003 - AluSx SINE Alu -22 290 1 1242 128 0 0 chr6 13575613 13575793 -175703761 - AluSg SINE Alu -12 300 121 693 109 42 34 chr6 13575846 13575965 -175703589 - AluSg SINE Alu -181 129 10 478 141 0 0 chr6 13575967 13576045 -175703509 - AluS SINE Alu -4 307 230 1564 102 0 0 chr6 13576045 13576242 -175703312 - AluSc SINE Alu -112 197 1 1919 174 0 0 chr6 13576253 13576547 -175703007 - AluJb SINE Alu -18 294 1 708 209 20 70 chr6 13577187 13577388 -175702166 - MLT1J LTR MaLR -82 429 239 184 224 35 17 chr6 13577665 13577723 -175701831 - MIR SINE MIR -66 142 84 1872 222 23 13 chr6 13578155 13578655 -175700899 + L1ME1 LINE L1 5672 6334 0 315 213 133 100 chr6 13578877 13579027 -175700527 + MIR SINE MIR 59 213 -49 2017 136 3 0 chr6 13579079 13579374 -175700180 - AluSx SINE Alu -16 296 1 673 220 52 47 chr6 13579473 13579705 -175699849 + L2 LINE L2 3008 3240 -73 841 73 28 0 chr6 13579727 13579836 -175699718 + AluSp/q SINE Alu 184 295 -18 25 0 0 0 chr6 13580866 13580891 -175698663 + AT_rich Low_complexity Low_complexity 1 25 0 210 71 0 0 chr6 13581536 13581564 -175697990 + (CA)n Simple_repeat Simple_repeat 2 29 0 2335 114 0 0 chr6 13581649 13581955 -175697599 + AluSx SINE Alu 1 306 -6 517 212 163 22 chr6 13582059 13582243 -175697311 - MIR SINE MIR 0 262 53 2347 121 0 0 chr6 13582333 13582639 -175696915 - AluSx SINE Alu -6 306 1 1570 220 34 63 chr6 13582771 13583248 -175696306 + MLT1C LTR MaLR 5 467 0 21 0 0 0 chr6 13583823 13583844 -175695710 + AT_rich Low_complexity Low_complexity 1 21 0 1977 143 0 23 chr6 13583950 13584258 -175695296 + AluSx SINE Alu 1 301 -11 455 312 23 6 chr6 13584314 13584487 -175695067 + MIR SINE MIR 41 216 -46 934 202 22 0 chr6 13585067 13585250 -175694304 - MER5A DNA MER1_type -2 187 1 535 337 93 11 chr6 13585744 13586014 -175693540 + MLT1J LTR MaLR 43 334 -177 235 48 0 0 chr6 13586169 13586211 -175693343 - AluSx SINE Alu 0 303 262 1691 95 0 5 chr6 13586213 13586424 -175693130 - AluSx SINE Alu -102 210 1 1560 195 3 10 chr6 13586849 13587147 -175692407 + AluJo SINE Alu 1 296 -16 25 0 0 0 chr6 13587206 13587231 -175692323 + AT_rich Low_complexity Low_complexity 1 25 0 845 260 40 37 chr6 13587795 13588091 -175691463 - LTR16A1 LTR ERVL -2 455 159 465 179 0 11 chr6 13588165 13588260 -175691294 - MER5B DNA MER1_type 0 178 85 345 140 0 0 chr6 13588546 13588603 -175690951 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 586 301 98 5 chr6 13589543 13589746 -175689808 + MIR SINE MIR 11 232 -30 354 243 29 18 chr6 13589946 13590091 -175689463 - MER91A DNA MER1_type -2 188 3 205 317 168 18 chr6 13590150 13590317 -175689237 - L2 LINE L2 -213 3059 2868 2459 80 0 3 chr6 13592398 13592699 -175686855 - AluY SINE Alu -10 301 2 192 216 0 0 chr6 13592948 13592999 -175686555 + (TA)n Simple_repeat Simple_repeat 2 52 0 339 353 7 20 chr6 13594919 13595069 -175684485 - MIR3 SINE MIR -38 170 23 222 174 0 0 chr6 13595326 13595372 -175684182 + CT-rich Low_complexity Low_complexity 1 46 0 692 177 23 6 chr6 13595385 13595560 -175683994 + CT-rich Low_complexity Low_complexity 1 178 0 1113 94 6 11 chr6 13595562 13595742 -175683812 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 197 317 69 0 chr6 13595773 13595874 -175683680 + L2 LINE L2 3189 3296 -17 186 256 122 49 chr6 13595921 13596003 -175683551 + MIR SINE MIR 7 94 -168 520 270 132 0 chr6 13596005 13596157 -175683397 - MER96 DNA MER1_type -3 172 1 209 311 112 54 chr6 13597077 13597318 -175682236 - MIR SINE MIR 0 262 8 2382 100 0 0 chr6 13597752 13598052 -175681502 + AluSg SINE Alu 1 300 -10 839 111 0 0 chr6 13598073 13598181 -175681373 + AluJb SINE Alu 9 116 -196 21 0 0 0 chr6 13598193 13598214 -175681340 + AT_rich Low_complexity Low_complexity 1 21 0 1503 189 18 18 chr6 13599442 13599722 -175679832 - AluJo SINE Alu -32 280 1 368 325 128 47 chr6 13600571 13600869 -175678685 - L2 LINE L2 0 3272 2951 325 164 44 214 chr6 13601044 13601203 -175678351 - L1MC2 LINE L1 -8 6336 6205 594 221 138 28 chr6 13601506 13601657 -175677897 + LTR41 LTR ERVL 1 177 -596 2197 131 0 3 chr6 13601657 13601969 -175677585 - AluSx SINE Alu -1 311 1 594 221 138 28 chr6 13601969 13601998 -175677556 + LTR41 LTR ERVL 177 201 -572 288 165 78 58 chr6 13602405 13602508 -175677046 + LTR41 LTR ERVL 654 758 -15 327 334 150 3 chr6 13602520 13602873 -175676681 - L2 LINE L2 -875 2439 2035 1937 105 9 93 chr6 13602899 13603233 -175676321 + AluSx SINE Alu 5 310 -2 1964 156 0 7 chr6 13604220 13604522 -175675032 - AluJb SINE Alu -12 300 1 2259 95 0 7 chr6 13604893 13605212 -175674342 + AluSx SINE Alu 1 317 0 255 149 0 43 chr6 13606397 13606444 -175673110 + MIR SINE MIR 102 146 -116 226 316 21 11 chr6 13608558 13608653 -175670901 + L2 LINE L2 2985 3080 -192 605 305 26 4 chr6 13608906 13609139 -175670415 + L3 LINE CR1 1195 1432 -145 281 300 111 67 chr6 13610218 13610398 -175669156 + MLT1K LTR MaLR 61 248 -340 320 231 132 50 chr6 13610476 13610597 -175668957 + MLT1K LTR MaLR 361 491 -97 280 296 88 32 chr6 13611637 13611762 -175667792 + L2 LINE L2 3137 3268 -4 532 249 55 12 chr6 13611981 13612146 -175667408 + MER5B DNA MER1_type 4 175 -3 181 294 0 0 chr6 13612313 13612364 -175667190 - MIR SINE MIR -109 153 103 2078 95 56 7 chr6 13612642 13612927 -175666627 - AluSq SINE Alu -14 299 1 711 271 67 4 chr6 13613890 13614130 -175665424 - MIR SINE MIR 0 262 8 1947 159 0 0 chr6 13614757 13615052 -175664502 - AluSx SINE Alu -17 295 1 944 148 35 79 chr6 13615057 13615286 -175664268 - MER20 DNA MER1_type 0 219 1 2347 96 0 3 chr6 13615397 13615700 -175663854 + AluSx SINE Alu 1 302 -10 289 282 14 0 chr6 13615727 13615798 -175663756 + CT-rich Low_complexity Low_complexity 4 75 0 1571 155 0 20 chr6 13616491 13616743 -175662811 - AluJb SINE Alu -26 286 40 340 318 124 65 chr6 13617919 13619139 -175660415 - L2 LINE L2 -11 3261 1889 2582 87 0 3 chr6 13619139 13619494 -175660060 + L1PA7 LINE L1 5817 6170 0 340 318 124 65 chr6 13619494 13619870 -175659684 - L2 LINE L2 -1383 1889 1537 492 290 80 0 chr6 13621297 13621459 -175658095 + MER5B DNA MER1_type 1 175 -3 2433 93 0 3 chr6 13621710 13622022 -175657532 + AluSq SINE Alu 1 311 -2 449 198 21 21 chr6 13622137 13622233 -175657321 - L2 LINE L2 0 3272 3177 2096 130 0 0 chr6 13622570 13622870 -175656684 - AluSx SINE Alu -12 300 1 245 323 219 10 chr6 13623901 13624093 -175655461 + MIR SINE MIR 17 248 -14 505 262 76 17 chr6 13625221 13625393 -175654161 - MIR SINE MIR -51 211 30 1048 280 46 52 chr6 13626186 13626873 -175652681 - L2 LINE L2 -6 3307 2629 2420 120 3 15 chr6 13626873 13627214 -175652340 - MER1B DNA MER1_type 0 337 1 1048 280 46 52 chr6 13627214 13627282 -175652272 - L2 LINE L2 -684 2629 2562 442 136 0 23 chr6 13627379 13627467 -175652087 + (GAA)n Simple_repeat Simple_repeat 2 87 0 1576 171 20 13 chr6 13627904 13628202 -175651352 - AluJo SINE Alu -12 300 1 392 273 154 26 chr6 13628205 13628492 -175651062 + MLT1I LTR MaLR 80 448 -2 21 36 0 0 chr6 13628654 13628682 -175650872 + AT_rich Low_complexity Low_complexity 1 28 0 1157 198 70 113 chr6 13628747 13629097 -175650457 - MSTD LTR MaLR 0 396 65 2220 113 3 16 chr6 13629097 13629406 -175650148 - AluSx SINE Alu -7 305 1 1157 198 70 113 chr6 13629406 13629469 -175650085 - MSTD LTR MaLR -331 65 1 372 230 70 10 chr6 13629470 13629570 -175649984 + L2 LINE L2 3199 3304 -9 284 127 18 0 chr6 13630134 13630189 -175649365 + GA-rich Low_complexity Low_complexity 3 58 0 367 274 34 33 chr6 13630566 13630757 -175648797 + MIR SINE MIR 26 214 -48 2113 114 3 19 chr6 13631062 13631378 -175648176 - AluSx SINE Alu -1 311 1 267 93 0 0 chr6 13632343 13632386 -175647168 + (TG)n Simple_repeat Simple_repeat 2 44 0 204 40 0 0 chr6 13632421 13632446 -175647108 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2307 91 0 3 chr6 13632490 13632788 -175646766 + AluY SINE Alu 1 297 -14 339 239 0 0 chr6 13633017 13633088 -175646466 + (TATG)n Simple_repeat Simple_repeat 1 71 0 541 223 0 22 chr6 13633092 13633276 -175646278 + (TG)n Simple_repeat Simple_repeat 1 180 0 1951 148 0 7 chr6 13633676 13633981 -175645573 + AluSx SINE Alu 1 303 -9 193 242 0 76 chr6 13634360 13634426 -175645128 - MIR SINE MIR -46 216 156 207 328 137 27 chr6 13635121 13635383 -175644171 + L2 LINE L2 1918 2208 -1106 389 256 364 0 chr6 13635461 13635711 -175643843 - L2 LINE L2 -31 3282 2942 366 273 133 0 chr6 13636073 13636201 -175643353 - MIR SINE MIR -4 258 114 553 293 100 60 chr6 13636602 13636637 -175642917 + MIR SINE MIR 1 33 -229 1593 159 12 93 chr6 13636637 13636971 -175642583 + AluJb SINE Alu 1 307 -5 553 293 100 60 chr6 13636971 13637184 -175642370 + MIR SINE MIR 33 259 -3 303 292 230 19 chr6 13637380 13637541 -175642013 + MIR SINE MIR 23 217 -45 245 346 52 22 chr6 13638664 13638800 -175640754 + MIR3 SINE MIR 22 161 -47 198 337 35 23 chr6 13639026 13639112 -175640442 - L2 LINE L2 0 3272 3186 2098 203 74 34 chr6 13639997 13640495 -175639059 + MLT2B1 LTR ERVL 3 520 0 569 239 4 148 chr6 13640720 13640950 -175638604 + MIR SINE MIR 56 252 -10 413 226 235 0 chr6 13640984 13641086 -175638468 + MER91A DNA MER1_type 70 195 -1 187 265 121 36 chr6 13641693 13641776 -175637778 + MIR SINE MIR 34 123 -139 210 71 0 0 chr6 13642133 13642161 -175637393 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 358 252 226 0 chr6 13643021 13643136 -175636418 + MER5A DNA MER1_type 46 186 -3 806 243 15 10 chr6 13643154 13643356 -175636198 - MER58A DNA MER1_type -3 221 19 276 274 153 16 chr6 13643704 13643828 -175635726 + L2 LINE L2 3162 3302 -11 1720 168 10 26 chr6 13643876 13644185 -175635369 + AluJo SINE Alu 1 304 -8 542 139 0 10 chr6 13644185 13644286 -175635268 + (GGAA)n Simple_repeat Simple_repeat 1 100 0 183 100 0 0 chr6 13644728 13644758 -175634796 + (TG)n Simple_repeat Simple_repeat 1 30 0 358 288 71 38 chr6 13644780 13645020 -175634534 - L1MC5 LINE L1 -36 7925 7678 358 239 18 37 chr6 13645002 13645111 -175634443 + L1MD3 LINE L1 6642 6748 -1247 189 74 0 0 chr6 13645135 13645162 -175634392 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 801 261 36 101 chr6 13645197 13645863 -175633691 + L1MC5 LINE L1 7000 7622 -339 205 175 123 18 chr6 13647126 13647183 -175632371 - L2 LINE L2 -1 3271 3209 231 303 15 0 chr6 13647235 13647301 -175632253 + L2 LINE L2 3190 3256 -16 2301 106 3 0 chr6 13648914 13649215 -175630339 - AluSc SINE Alu -7 302 1 314 301 49 21 chr6 13649647 13649790 -175629764 + MIR SINE MIR 90 236 -26 249 83 0 0 chr6 13651699 13651735 -175627819 + (CA)n Simple_repeat Simple_repeat 2 37 0 437 274 9 9 chr6 13652021 13652134 -175627420 + MER81 DNA DNA 1 113 -1 2455 84 0 0 chr6 13652483 13652794 -175626760 - AluY SINE Alu 0 311 1 807 189 18 18 chr6 13652842 13653006 -175626548 + MER5A DNA MER1_type 26 189 0 1483 198 103 21 chr6 13653691 13654030 -175625524 + MLT1A2 LTR MaLR 4 370 -4 295 248 105 0 chr6 13654160 13654265 -175625289 - MIR SINE MIR -116 146 31 200 289 44 0 chr6 13655215 13655305 -175624249 + (CATA)n Simple_repeat Simple_repeat 2 95 0 * 246 304 0 0 chr6 13655254 13655333 -175624221 + (TA)n Simple_repeat Simple_repeat 1 79 0 6690 57 12 7 chr6 13656374 13657184 -175622370 + L1PA7 LINE L1 5333 6146 -8 183 42 0 0 chr6 13657186 13657210 -175622344 + (ATG)n Simple_repeat Simple_repeat 1 24 0 350 42 21 0 chr6 13658347 13658395 -175621159 + (TG)n Simple_repeat Simple_repeat 2 50 0 1468 164 4 16 chr6 13658428 13658678 -175620876 - AluJo SINE Alu -61 251 5 392 336 69 0 chr6 13659120 13659251 -175620303 + L2 LINE L2 3132 3271 -1 180 346 26 13 chr6 13659247 13659325 -175620229 - MIR SINE MIR -100 108 30 * 192 77 0 0 chr6 13659471 13659497 -175620057 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2032 119 25 0 chr6 13659576 13659862 -175619692 - AluSc SINE Alu -15 294 2 2329 92 0 13 chr6 13660637 13660952 -175618602 + AluY SINE Alu 1 311 0 2050 160 8 22 chr6 13661376 13661733 -175617821 - L1PA16 LINE L1 -1 6165 5814 872 203 0 0 chr6 13661741 13661889 -175617665 - AluJo/FRAM SINE Alu -30 282 135 507 191 0 0 chr6 13661889 13661973 -175617581 - AluJ/FLAM SINE Alu -227 85 2 3528 129 18 9 chr6 13661980 13662633 -175616921 - L1PA16 LINE L1 -347 5819 5161 2437 112 44 19 chr6 13663308 13663674 -175615880 + THE1C LTR MaLR 1 375 0 415 280 137 17 chr6 13663793 13663968 -175615586 + MER117 DNA MER1_type 1 196 -1 345 312 89 25 chr6 13664619 13664776 -175614778 - MIR3 SINE MIR -31 177 11 2203 136 0 0 chr6 13665058 13665366 -175614188 + AluSx SINE Alu 1 308 -4 1563 208 89 51 chr6 13666186 13666634 -175612920 + MLT1C LTR MaLR 2 466 -1 378 321 19 12 chr6 13666753 13666915 -175612639 + MER117 DNA MER1_type 2 164 -33 21 0 0 0 chr6 13667318 13667339 -175612215 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 13669352 13669375 -175610179 + AT_rich Low_complexity Low_complexity 1 23 0 180 111 0 0 chr6 13669881 13669908 -175609646 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 1743 145 9 41 chr6 13670077 13670394 -175609160 + AluJb SINE Alu 2 308 -4 181 289 0 39 chr6 13670955 13671007 -175608547 - L2 LINE L2 -12 3260 3211 288 0 0 0 chr6 13671095 13671127 -175608427 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 253 359 11 0 chr6 13672593 13672685 -175606869 + L2 LINE L2 3188 3280 -33 1625 202 0 31 chr6 13672760 13673082 -175606472 - AluJo SINE Alu 0 312 1 273 313 72 15 chr6 13673182 13673281 -175606273 - MIR SINE MIR -102 106 16 189 147 0 0 chr6 13673688 13673722 -175605832 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 1728 163 13 35 chr6 13674350 13674663 -175604891 + AluJo SINE Alu 1 306 -6 29 0 0 0 chr6 13675085 13675114 -175604440 + AT_rich Low_complexity Low_complexity 1 29 0 399 292 140 39 chr6 13675952 13676130 -175603424 + MIR SINE MIR 66 261 -1 565 289 147 10 chr6 13678025 13678229 -175601325 + MIR SINE MIR 29 260 -2 180 77 0 0 chr6 13678241 13678267 -175601287 + (CAG)n Simple_repeat Simple_repeat 3 28 0 501 308 0 0 chr6 13678897 13679043 -175600511 + MLT1E LTR MaLR 10 155 -438 1314 190 123 3 chr6 13679102 13679386 -175600168 + MLT1E LTR MaLR 276 593 0 297 274 122 12 chr6 13679390 13679554 -175600000 - MIR SINE MIR -25 237 56 3968 134 13 2 chr6 13680032 13680628 -175598926 - LTR26 LTR ERV1 0 603 1 28 48 0 0 chr6 13681208 13681250 -175598304 + AT_rich Low_complexity Low_complexity 1 42 0 243 292 54 46 chr6 13681353 13681483 -175598071 + MIR SINE MIR 47 177 -85 384 328 109 30 chr6 13682950 13683352 -175596202 - L2 LINE L2 -6 3307 2874 2386 95 0 0 chr6 13683636 13683940 -175595614 + AluSx SINE Alu 1 304 -8 224 353 12 0 chr6 13684078 13684163 -175595391 - MIR SINE MIR -65 143 58 842 211 6 18 chr6 13685080 13685251 -175594303 - AluJo SINE Alu -23 289 121 199 193 18 53 chr6 13685252 13685309 -175594245 + MIR3 SINE MIR 125 179 -29 181 286 0 0 chr6 13685997 13686039 -175593515 - L2 LINE L2 -10 3303 3262 597 150 0 0 chr6 13686169 13686269 -175593285 + L1PB4 LINE L1 6047 6146 -10 27 51 0 17 chr6 13686270 13686299 -175593255 + AT_rich Low_complexity Low_complexity 1 29 -29 2255 81 3 24 chr6 13686299 13686596 -175592958 + AluSq SINE Alu 1 291 -22 27 51 0 17 chr6 13686596 13686625 -175592929 + AT_rich Low_complexity Low_complexity 29 58 0 995 109 0 27 chr6 13687036 13687219 -175592335 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1980 116 7 10 chr6 13687229 13687522 -175592032 - AluSx SINE Alu -20 292 1 1698 130 68 0 chr6 13688090 13688397 -175591157 - L1MA5 LINE L1 0 6300 5973 344 259 70 7 chr6 13688477 13688620 -175590934 - L1ME4a LINE L1 -2 6119 5968 261 0 0 0 chr6 13691264 13691293 -175588261 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 544 235 143 71 chr6 13691808 13691863 -175587691 - MIR SINE MIR 0 262 212 1714 171 0 23 chr6 13691863 13692049 -175587505 - AluJo SINE Alu -15 297 119 255 31 0 0 chr6 13692049 13692081 -175587473 + (TG)n Simple_repeat Simple_repeat 1 32 0 1714 171 0 23 chr6 13692081 13692198 -175587356 - AluJo SINE Alu -193 119 1 544 235 143 71 chr6 13692198 13692380 -175587174 - MIR SINE MIR -50 212 8 3561 143 2 0 chr6 13692714 13693240 -175586314 - MER1A DNA MER1_type 0 527 1 602 272 28 22 chr6 13693890 13694070 -175585484 - MIR SINE MIR -17 245 65 239 302 148 13 chr6 13695341 13695490 -175584064 + MIR SINE MIR 76 244 -18 189 0 0 0 chr6 13695690 13695711 -175583843 + (TC)n Simple_repeat Simple_repeat 2 22 0 2213 132 0 3 chr6 13695711 13696015 -175583539 - AluSx SINE Alu -9 303 1 216 200 0 36 chr6 13696589 13696644 -175582910 + GA-rich Low_complexity Low_complexity 5 57 0 2110 132 3 7 chr6 13696715 13697025 -175582529 + AluSc SINE Alu 1 309 0 306 312 23 25 chr6 13697555 13697715 -175581839 - MIR SINE MIR -65 143 34 722 246 200 43 chr6 13698618 13699042 -175580512 + MLT1H LTR MaLR 17 549 0 2435 74 0 0 chr6 13699072 13699370 -175580184 + AluY SINE Alu 1 298 -13 624 280 81 5 chr6 13699561 13699772 -175579782 - MIR SINE MIR 0 262 36 295 306 64 46 chr6 13702547 13702720 -175576834 - MIR3 SINE MIR -13 195 20 191 211 0 0 chr6 13702761 13702799 -175576755 - L2 LINE L2 -12 3301 3264 * 223 322 246 10 chr6 13702766 13702965 -175576589 - MIR SINE MIR -11 251 6 567 195 169 13 chr6 13703219 13703373 -175576181 - MER5A DNA MER1_type -3 186 9 21 36 0 0 chr6 13704096 13704124 -175575430 + AT_rich Low_complexity Low_complexity 1 28 0 356 353 83 29 chr6 13704598 13704839 -175574715 + MIR SINE MIR 1 254 -8 1963 160 22 3 chr6 13704842 13705205 -175574349 + L1MB5 LINE L1 5805 6174 0 351 204 23 68 chr6 13705614 13705746 -175573808 - L1ME3 LINE L1 0 6162 6037 281 47 23 0 chr6 13706841 13706884 -175572670 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 469 258 32 7 chr6 13707679 13707834 -175571720 + MER117 DNA MER1_type 2 160 -37 1603 159 0 54 chr6 13708007 13708303 -175571251 + AluJb SINE Alu 1 280 -32 591 208 0 0 chr6 13708321 13708451 -175571103 + GA-rich Low_complexity Low_complexity 3 132 0 23 0 0 0 chr6 13709843 13709866 -175569688 + AT_rich Low_complexity Low_complexity 1 23 0 182 364 0 0 chr6 13709947 13710002 -175569552 - L2 LINE L2 -3 3310 3256 658 164 17 0 chr6 13710580 13710696 -175568858 + FLAM_A SINE Alu 1 118 -15 2116 141 3 0 chr6 13711294 13711630 -175567924 + AluSx SINE Alu 1 337 0 1599 148 110 0 chr6 13712385 13712649 -175566905 - AluJb SINE Alu -19 293 1 22 0 0 0 chr6 13712651 13712673 -175566881 + AT_rich Low_complexity Low_complexity 1 22 0 981 171 15 29 chr6 13713315 13713520 -175566034 + MER20 DNA MER1_type 17 218 -1 539 191 33 82 chr6 13714459 13714642 -175564912 + MER104 DNA MER2_type 4 177 -3 201 167 17 33 chr6 13715053 13715113 -175564441 + (TTATA)n Simple_repeat Simple_repeat 5 63 0 248 208 0 0 chr6 13715512 13715560 -175563994 + MIR3 SINE MIR 155 202 -6 1774 165 3 13 chr6 13716282 13716591 -175562963 - AluJb SINE Alu -6 306 1 210 98 59 20 chr6 13718956 13719007 -175560547 + CT-rich Low_complexity Low_complexity 1 53 0 1053 273 78 80 chr6 13719008 13719125 -175560429 - L2 LINE L2 -2 3311 3195 270 0 0 0 chr6 13719125 13719155 -175560399 + (TG)n Simple_repeat Simple_repeat 2 31 0 1053 273 78 80 chr6 13719155 13719499 -175560055 - L2 LINE L2 -118 3195 2851 297 0 0 0 chr6 13720153 13720186 -175559368 + (CA)n Simple_repeat Simple_repeat 1 33 0 487 281 0 16 chr6 13720191 13720319 -175559235 + MIR SINE MIR 29 154 -108 583 196 140 22 chr6 13722027 13722186 -175557368 + MER5A DNA MER1_type 4 183 -6 1328 201 49 49 chr6 13722399 13722723 -175556831 + MER33 DNA MER1_type 1 324 0 360 324 0 10 chr6 13723091 13723193 -175556361 - MIR SINE MIR -140 122 22 205 363 0 0 chr6 13723199 13723279 -175556275 + L2 LINE L2 3188 3267 -5 2582 68 3 0 chr6 13724701 13725012 -175554542 - AluSp SINE Alu -1 312 1 242 239 0 68 chr6 13725056 13725144 -175554410 - L1MC4 LINE L1 -1350 6692 6611 582 331 97 21 chr6 13725144 13725434 -175554120 + L2 LINE L2 3001 3312 -1 221 331 94 31 chr6 13725425 13725585 -175553969 - MIR SINE MIR -3 259 90 * 225 296 111 0 chr6 13726093 13726174 -175553380 + L2 LINE L2 3177 3266 -6 236 309 10 10 chr6 13726456 13726553 -175553001 + LTR67 LTR ERVL 429 525 -32 2719 275 109 37 chr6 13726554 13727262 -175552292 - L2 LINE L2 -1 3312 2656 1371 45 0 0 chr6 13727262 13727416 -175552138 + L1PA3 LINE L1 5999 6152 -3 2719 275 109 37 chr6 13727416 13728114 -175551440 - L2 LINE L2 -657 2656 1809 2044 122 0 10 chr6 13729017 13729320 -175550234 - AluSx SINE Alu -12 300 1 191 267 22 0 chr6 13730049 13730094 -175549460 + MIR3 SINE MIR 152 197 -11 311 284 0 32 chr6 13732079 13732174 -175547380 + L1MC4 LINE L1 6612 6703 -1339 2146 85 22 0 chr6 13732186 13732457 -175547097 + AluSp SINE Alu 1 277 -36 194 0 0 37 chr6 13732459 13732486 -175547068 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 273 211 15 30 chr6 13732488 13732621 -175546933 + (TA)n Simple_repeat Simple_repeat 2 132 0 * 593 191 29 6 chr6 13732610 13732783 -175546771 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 581 153 0 53 chr6 13732836 13733025 -175546529 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 484 162 11 50 chr6 13733050 13733229 -175546325 + (TATATG)n Simple_repeat Simple_repeat 2 173 0 351 0 0 0 chr6 13736906 13736945 -175542609 + (CA)n Simple_repeat Simple_repeat 2 40 0 243 0 0 0 chr6 13737640 13737667 -175541887 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2415 78 3 0 chr6 13737847 13738141 -175541413 - AluSp SINE Alu -18 295 1 772 236 39 6 chr6 13738172 13738354 -175541200 + MER91A DNA MER1_type 9 196 0 2692 113 25 27 chr6 13739235 13739263 -175540291 + L1PA15 LINE L1 5754 5781 -384 2403 106 0 0 chr6 13739263 13739575 -175539979 + AluSx SINE Alu 1 312 0 2692 113 25 27 chr6 13739575 13739952 -175539602 + L1PA15 LINE L1 5781 6158 -7 189 0 0 0 chr6 13739952 13739973 -175539581 + (TA)n Simple_repeat Simple_repeat 2 22 0 313 391 0 0 chr6 13741176 13741291 -175538263 + L2 LINE L2 3153 3267 -5 27 29 0 0 chr6 13741292 13741326 -175538228 + AT_rich Low_complexity Low_complexity 1 34 0 35 54 0 0 chr6 13741845 13741901 -175537653 + AT_rich Low_complexity Low_complexity 1 56 0 1979 119 0 27 chr6 13742495 13742814 -175536740 + AluSq SINE Alu 1 311 0 226 314 39 45 chr6 13745028 13745184 -175534370 + L2 LINE L2 1699 1853 -1461 308 336 79 55 chr6 13746669 13746961 -175532593 + L2 LINE L2 2963 3261 -11 632 227 59 49 chr6 13747530 13747733 -175531821 - MIR SINE MIR -10 252 48 2841 145 66 32 chr6 13747840 13748332 -175531222 - L1MA6 LINE L1 -4 6296 5783 477 0 0 0 chr6 13748332 13748385 -175531169 + (TG)n Simple_repeat Simple_repeat 2 54 0 2841 145 66 32 chr6 13748385 13748424 -175531130 - L1MA6 LINE L1 -517 5783 5747 296 128 0 0 chr6 13748547 13748594 -175530960 - L1M2 LINE L1 -507 5793 5747 * 1077 155 58 0 chr6 13748592 13748798 -175530756 + L1M2 LINE L1 5562 5779 -512 2565 53 0 0 chr6 13748949 13749253 -175530301 + AluY SINE Alu 1 304 -7 839 225 115 16 chr6 13750695 13750886 -175528668 + MER63A DNA MER1_type 1 210 0 247 311 0 0 chr6 13750967 13751041 -175528513 + MIR3 SINE MIR 111 184 -24 388 324 0 0 chr6 13751902 13752013 -175527541 - L2 LINE L2 0 3272 3162 37 23 0 0 chr6 13753422 13753466 -175526088 + AT_rich Low_complexity Low_complexity 1 44 0 2181 100 7 0 chr6 13754099 13754431 -175525123 - AluSp SINE Alu 0 334 1 192 40 0 0 chr6 13755138 13755163 -175524391 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2170 120 0 0 chr6 13756413 13756712 -175522842 - AluSq SINE Alu -14 299 1 213 325 38 0 chr6 13756779 13756859 -175522695 + CT-rich Low_complexity Low_complexity 2 84 0 1202 247 0 0 chr6 13757289 13757524 -175522030 - MIR SINE MIR -21 241 7 853 213 133 8 chr6 13757570 13757810 -175521744 + ORSL DNA AcHobo 1 270 -5 300 228 73 103 chr6 13757974 13758206 -175521348 - MER112 DNA MER1_type -7 253 29 2225 120 3 3 chr6 13758214 13758522 -175521032 - AluSx SINE Alu -4 308 1 473 321 16 26 chr6 13758662 13758852 -175520702 + MIR SINE MIR 18 205 -57 * 1566 269 125 31 chr6 13758842 13758876 -175520678 + L2 LINE L2 2221 2250 -1063 1938 111 3 74 chr6 13758876 13759200 -175520354 - AluSg SINE Alu -9 301 1 1566 269 125 31 chr6 13759200 13759236 -175520318 + L2 LINE L2 2250 2281 -1032 2029 135 3 3 chr6 13759236 13759533 -175520021 - AluSx SINE Alu -15 297 1 1566 269 125 31 chr6 13759533 13760427 -175519127 + L2 LINE L2 2281 3261 -52 21 57 0 0 chr6 13761734 13761769 -175517785 + AT_rich Low_complexity Low_complexity 1 35 0 347 287 125 15 chr6 13761958 13762094 -175517460 - MIR3 SINE MIR -21 187 37 2082 149 46 0 chr6 13762358 13762687 -175516867 + MER2 DNA MER2_type 1 344 0 2205 90 0 37 chr6 13763092 13763391 -175516163 + AluY SINE Alu 3 290 -21 252 0 0 0 chr6 13763391 13763419 -175516135 + (TA)n Simple_repeat Simple_repeat 2 29 0 203 188 21 0 chr6 13766338 13766386 -175513168 + (CA)n Simple_repeat Simple_repeat 2 50 0 551 185 19 12 chr6 13766778 13766940 -175512614 + CT-rich Low_complexity Low_complexity 2 164 0 24 0 0 0 chr6 13767535 13767559 -175511995 + GC_rich Low_complexity Low_complexity 1 24 0 262 226 10 10 chr6 13767722 13767824 -175511730 + G-rich Low_complexity Low_complexity 6 107 0 295 308 13 0 chr6 13767953 13768031 -175511523 + GA-rich Low_complexity Low_complexity 2 80 0 1336 211 0 12 chr6 13769817 13770076 -175509478 - AluJo SINE Alu -55 257 9 206 264 0 19 chr6 13770091 13770144 -175509410 + GA-rich Low_complexity Low_complexity 3 54 0 279 292 29 40 chr6 13770144 13770248 -175509306 - MIR SINE MIR -93 115 11 1654 194 0 14 chr6 13770913 13771207 -175508347 - AluJb SINE Alu -22 290 1 225 263 8 42 chr6 13771212 13771330 -175508224 + T-rich Low_complexity Low_complexity 5 118 0 338 350 15 30 chr6 13771495 13771692 -175507862 + MIR3 SINE MIR 1 194 -14 406 274 14 41 chr6 13772349 13772495 -175507059 + MER5A DNA MER1_type 9 150 -39 502 232 7 21 chr6 13772500 13772642 -175506912 + L1MB2 LINE L1 4090 4229 -1917 3945 165 24 11 chr6 13873862 13874601 -175404953 + L1MB2 LINE L1 5422 6170 -1 207 100 0 0 chr6 13875516 13875546 -175404008 + (T)n Simple_repeat Simple_repeat 1 30 0 586 287 22 22 chr6 13877467 13877739 -175401815 + AluSg1 SINE Alu 36 307 -2 1612 70 0 0 chr6 13878549 13878735 -175400819 - AluSg/x SINE Alu -20 290 105 258 146 0 0 chr6 13878735 13878776 -175400778 - Alu SINE Alu -260 41 1 196 337 122 20 chr6 13878804 13878902 -175400652 - MER5A DNA MER1_type -75 114 7 1587 137 3 51 chr6 13879020 13879312 -175400242 + AluSq SINE Alu 35 312 -1 2254 99 20 0 chr6 13880825 13881117 -175398437 - AluSq SINE Alu -12 301 4 546 226 22 7 chr6 13881710 13881847 -175397707 + MIR SINE MIR 123 261 -1 272 335 27 49 chr6 13881951 13882136 -175397418 - L2 LINE L2 -219 3053 2873 259 308 43 26 chr6 13882554 13882671 -175396883 - L2 LINE L2 -568 2746 2628 1927 141 60 110 chr6 13883333 13883786 -175395768 - MSTB1 LTR MaLR 0 432 3 3659 148 17 22 chr6 13884745 13885348 -175394206 - MER6A DNA MER2_type -5 600 1 252 238 0 0 chr6 13885377 13885440 -175394114 + (CA)n Simple_repeat Simple_repeat 2 64 0 210 71 0 0 chr6 13885932 13885960 -175393594 + (G)n Simple_repeat Simple_repeat 1 28 0 2137 125 0 7 chr6 13886397 13886693 -175392861 - AluSc SINE Alu -15 294 1 297 274 35 53 chr6 13886694 13886807 -175392747 - MIR SINE MIR -98 164 54 309 285 65 32 chr6 13887633 13887756 -175391798 - MER5B DNA MER1_type -50 128 2 2134 110 4 0 chr6 13888171 13888481 -175391073 + AluSx SINE Alu 1 311 0 184 307 114 43 chr6 13888839 13888979 -175390575 - L2 LINE L2 -6 3266 3117 286 334 208 25 chr6 13889193 13889717 -175389837 - L2 LINE L2 -411 2903 2284 338 262 107 0 chr6 13890128 13890250 -175389304 - MIR SINE MIR -64 198 64 2116 114 10 7 chr6 13890453 13890743 -175388811 - AluSg SINE Alu -18 292 2 435 339 18 0 chr6 13890750 13890918 -175388636 - MER5A DNA MER1_type -6 183 13 212 282 101 34 chr6 13891009 13891095 -175388459 + MIR SINE MIR 71 150 -112 1301 108 33 75 chr6 13891095 13891335 -175388219 - MER30 DNA MER1_type 0 230 1 212 282 101 34 chr6 13891335 13891397 -175388157 + MIR SINE MIR 150 229 -33 192 250 0 0 chr6 13891705 13891741 -175387813 + L2 LINE L2 3266 3301 -12 400 238 19 0 chr6 13891821 13891926 -175387628 + MER5A DNA MER1_type 10 116 -73 1177 34 0 27 chr6 13892163 13892312 -175387242 + L1PA5 LINE L1 6010 6154 0 331 314 45 0 chr6 13892314 13892473 -175387081 + MIR SINE MIR 35 198 -58 317 216 137 93 chr6 13892495 13892634 -175386920 + MER91A DNA MER1_type 52 196 0 2287 117 0 0 chr6 13893136 13893443 -175386111 + AluSg SINE Alu 1 307 -3 2259 106 3 3 chr6 13894074 13894377 -175385177 - AluSx SINE Alu -9 303 1 1056 141 38 0 chr6 13895060 13895244 -175384310 - L1MA7 LINE L1 -6 6285 6095 2325 85 0 20 chr6 13895440 13895735 -175383819 - AluSc SINE Alu -20 289 1 1577 196 3 7 chr6 13896170 13896455 -175383099 + AluJo SINE Alu 1 284 -28 252 0 0 0 chr6 13896472 13896500 -175383054 + (TA)n Simple_repeat Simple_repeat 1 28 0 272 214 0 0 chr6 13897052 13897108 -175382446 - L2 LINE L2 -60 3253 3198 188 295 253 0 chr6 13897189 13897284 -175382270 - L3 LINE CR1 -1027 550 432 205 337 64 41 chr6 13897441 13897613 -175381941 + L2 LINE L2 2884 3059 -213 1599 228 66 24 chr6 13898063 13898515 -175381039 + MER74B LTR ERVL 69 539 -83 1414 204 34 67 chr6 13899359 13899523 -175380031 + MLT1A2 LTR MaLR 1 169 -205 2067 112 3 42 chr6 13899523 13899836 -175379718 + AluSx SINE Alu 1 301 -11 1414 204 34 67 chr6 13899836 13900058 -175379496 + MLT1A2 LTR MaLR 169 374 0 2104 133 0 3 chr6 13900160 13900461 -175379093 + AluJb SINE Alu 1 300 -12 367 329 43 6 chr6 13900497 13900661 -175378893 + MIR SINE MIR 13 182 -80 201 314 59 52 chr6 13902181 13902334 -175377220 + L2 LINE L2 2633 2786 -528 3596 116 17 17 chr6 13902624 13903151 -175376403 + MER1A DNA MER1_type 1 527 0 316 267 100 0 chr6 13903265 13903385 -175376169 + L1ME LINE L1 5558 5689 -432 213 243 14 40 chr6 13905250 13905324 -175374230 + GA-rich Low_complexity Low_complexity 6 77 0 22 35 0 0 chr6 13906893 13906922 -175372632 + AT_rich Low_complexity Low_complexity 1 29 0 2447 69 3 0 chr6 13907638 13907927 -175371627 - AluSp SINE Alu -23 290 1 32 26 0 0 chr6 13907937 13907976 -175371578 + AT_rich Low_complexity Low_complexity 1 39 0 587 104 21 0 chr6 13910133 13910229 -175369325 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 23 0 0 0 chr6 13910402 13910425 -175369129 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chr6 13910436 13910476 -175369078 + (CA)n Simple_repeat Simple_repeat 2 41 0 186 43 0 0 chr6 13910618 13910641 -175368913 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1881 143 0 7 chr6 13910643 13910930 -175368624 - AluJb SINE Alu -27 285 1 863 206 10 36 chr6 13911270 13911464 -175368090 - MER5A DNA MER1_type 0 189 1 333 273 0 0 chr6 13912417 13912505 -175367049 - L1MC4 LINE L1 -1340 6702 6615 222 143 0 0 chr6 13912505 13912554 -175367000 + (GA)n Simple_repeat Simple_repeat 1 49 0 1406 150 105 20 chr6 13912565 13912812 -175366742 - AluJo SINE Alu -34 278 11 23 0 0 0 chr6 13913197 13913220 -175366334 + AT_rich Low_complexity Low_complexity 1 23 0 192 360 10 10 chr6 13914460 13914560 -175364994 + MIR3 SINE MIR 97 196 -12 24 0 0 0 chr6 13914757 13914781 -175364773 + AT_rich Low_complexity Low_complexity 1 24 0 264 316 132 6 chr6 13914959 13915133 -175364421 - MIR SINE MIR -6 256 61 234 91 0 0 chr6 13915145 13915178 -175364376 + (GA)n Simple_repeat Simple_repeat 2 34 0 1953 92 4 11 chr6 13915909 13916171 -175363383 + AluSc SINE Alu 19 278 -31 437 135 40 0 chr6 13916637 13916711 -175362843 + MADE1 DNA Mariner 1 77 -3 2274 92 3 3 chr6 13917835 13918128 -175361426 + AluSq SINE Alu 1 293 -20 773 272 19 5 chr6 13918199 13918405 -175361149 - MER3 DNA MER1_type 0 209 1 486 250 250 19 chr6 13919667 13919927 -175359627 + MLT1L LTR MaLR 215 534 -81 196 289 33 0 chr6 13919931 13920021 -175359533 - L2 LINE L2 0 3313 3221 659 321 79 43 chr6 13920203 13920941 -175358613 + L2 LINE L2 1932 2695 -619 421 334 49 37 chr6 13921102 13921452 -175358102 + L2 LINE L2 2919 3272 0 22 0 0 0 chr6 13921965 13921987 -175357567 + AT_rich Low_complexity Low_complexity 1 22 0 194 308 33 67 chr6 13922786 13922906 -175356648 + MIR3 SINE MIR 72 187 -21 1012 229 112 0 chr6 13922945 13923159 -175356395 - MER8 DNA MER2_type 0 239 2 817 273 61 60 chr6 13923410 13924003 -175355551 - L2 LINE L2 0 3313 2708 653 322 41 25 chr6 13924173 13924487 -175355067 + L2 LINE L2 2995 3313 0 539 286 182 16 chr6 13926052 13926244 -175353310 - MIR SINE MIR -38 224 1 302 292 163 22 chr6 13926381 13926559 -175352995 - L2 LINE L2 -3 3310 3108 2199 108 7 0 chr6 13926647 13926942 -175352612 - AluSx SINE Alu -15 297 1 215 319 78 26 chr6 13926948 13927064 -175352490 - L2 LINE L2 -18 3254 3133 247 250 25 12 chr6 13927398 13927478 -175352076 + L3b LINE CR1 1296 1376 -207 1939 116 25 0 chr6 13927479 13927603 -175351951 + AluSx SINE Alu 1 120 -192 282 29 0 0 chr6 13927603 13927638 -175351916 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1939 116 25 0 chr6 13927638 13927818 -175351736 + AluSx SINE Alu 120 312 0 181 157 0 39 chr6 13928553 13928604 -175350950 + GA-rich Low_complexity Low_complexity 2 50 0 800 137 7 43 chr6 13928638 13928777 -175350777 + AluJo SINE Alu 2 135 -177 5679 124 70 18 chr6 13929104 13930031 -175349523 - Tigger1 DNA MER2_type -1443 975 1 2411 240 69 13 chr6 13930877 13931503 -175348051 - MER67B LTR ERV1 0 661 1 476 139 38 0 chr6 13931503 13931582 -175347972 - MER31B LTR ERV1 -384 82 1 657 215 60 52 chr6 13933346 13933579 -175345975 - MER39 LTR ERV1 0 707 473 447 276 25 80 chr6 13934202 13934322 -175345232 - MER5A DNA MER1_type -21 168 58 2142 167 74 26 chr6 13934322 13934700 -175344854 - MSTD LTR MaLR 0 396 1 447 276 25 80 chr6 13934700 13934742 -175344812 - MER5A DNA MER1_type -131 58 15 800 236 20 92 chr6 13936882 13937075 -175342479 - L1MD3 LINE L1 -8 7987 7829 2170 131 0 3 chr6 13937075 13937381 -175342173 + AluSx SINE Alu 1 305 -7 800 236 20 92 chr6 13937381 13937535 -175342019 - L1MD3 LINE L1 -166 7829 7665 1558 187 15 4 chr6 13938379 13938652 -175340902 + AluJo SINE Alu 7 282 -30 603 209 79 70 chr6 13938788 13939003 -175340551 - MER21B LTR ERV1 -149 714 498 2928 106 30 2 chr6 13939025 13939458 -175340096 - LTR56 LTR ERV1 0 445 1 996 169 18 114 chr6 13939467 13939739 -175339815 - L1MEc LINE L1 -1899 4316 4071 1284 181 4 9 chr6 13939739 13939966 -175339588 - AluJo SINE Alu -1 311 86 4350 231 48 67 chr6 13939966 13940410 -175339144 - L1MEc LINE L1 -2143 4072 3621 1653 178 25 4 chr6 13940410 13940685 -175338869 - AluJo SINE Alu -31 281 1 4350 231 48 67 chr6 13940685 13943107 -175336447 - L1MEc LINE L1 -2594 3621 1059 309 26 0 0 chr6 13943107 13943145 -175336409 + (TG)n Simple_repeat Simple_repeat 2 39 0 4350 231 48 67 chr6 13943145 13944155 -175335399 - L1MEc LINE L1 -5156 1059 32 233 241 0 0 chr6 13944182 13944236 -175335318 + T-rich Low_complexity Low_complexity 1 54 0 361 242 148 53 chr6 13944239 13944682 -175334872 - L1MC/D LINE L1 -305 5816 5357 360 283 204 27 chr6 13944684 13945091 -175334463 - HAL1 LINE L1 0 2507 2029 6411 85 26 13 chr6 13945152 13946366 -175333188 - L1PA13 LINE L1 -3 6160 4935 815 151 0 0 chr6 13946373 13946492 -175333062 + FRAM SINE Alu 46 164 -12 399 319 68 16 chr6 13946492 13946740 -175332814 + L1 LINE L1 3384 3644 -2502 362 273 69 49 chr6 13946748 13947106 -175332448 + L1 LINE L1 3854 4213 -1933 957 207 4 80 chr6 13947869 13948106 -175331448 + MER20 DNA MER1_type 1 219 0 460 264 185 35 chr6 13948138 13948365 -175331189 - MIR SINE MIR 0 262 2 199 188 0 0 chr6 13948380 13948412 -175331142 - MIR SINE MIR -55 153 122 237 65 0 0 chr6 13948651 13948682 -175330872 + (TC)n Simple_repeat Simple_repeat 1 31 0 448 247 112 34 chr6 13948766 13948944 -175330610 - LTR16C LTR ERVL 0 491 300 202 204 23 0 chr6 13949696 13949740 -175329814 - MIR SINE MIR 0 262 218 340 268 62 67 chr6 13949779 13949988 -175329566 + L1ME3A LINE L1 5961 6168 -2 591 235 47 20 chr6 13950050 13950199 -175329355 - MIR SINE MIR -46 216 64 2339 109 3 0 chr6 13951745 13952049 -175327505 - AluSg SINE Alu -5 305 1 483 282 119 13 chr6 13952070 13952297 -175327257 + MIR SINE MIR 2 252 -10 188 171 29 29 chr6 13953479 13953549 -175326005 + CT-rich Low_complexity Low_complexity 3 72 0 752 218 26 13 chr6 13954541 13954697 -175324857 + MIR SINE MIR 13 170 -92 203 404 35 0 chr6 13954844 13955015 -175324539 - L2 LINE L2 -503 2811 2635 226 259 0 0 chr6 13955213 13955267 -175324287 + (TA)n Simple_repeat Simple_repeat 1 54 0 1041 219 5 9 chr6 13957897 13958112 -175321442 - MLT1A2 LTR MaLR -11 363 150 359 217 155 87 chr6 13958263 13958470 -175321084 + L1PBa LINE L1 740 960 -2263 26 50 0 0 chr6 13958836 13958876 -175320678 + AT_rich Low_complexity Low_complexity 1 40 0 1984 150 0 7 chr6 13958925 13959219 -175320335 + AluJb SINE Alu 3 294 -18 24 53 0 0 chr6 13959306 13959344 -175320210 + AT_rich Low_complexity Low_complexity 1 38 0 623 316 67 10 chr6 13959923 13960116 -175319438 - MIR SINE MIR -44 218 15 3127 147 32 26 chr6 13960142 13960561 -175318993 - MER34 LTR ERV1 -1 541 117 1891 142 10 10 chr6 13960561 13960863 -175318691 + AluJo SINE Alu 1 302 -10 3127 147 32 26 chr6 13960863 13960981 -175318573 - MER34 LTR ERV1 -425 117 1 1964 90 181 12 chr6 13961116 13961437 -175318117 - THE1C LTR MaLR 0 375 1 8677 202 23 17 chr6 13961458 13964402 -175315152 + L1PBa LINE L1 1648 4673 -2189 276 100 0 0 chr6 13964405 13964445 -175315109 + (TA)n Simple_repeat Simple_repeat 2 41 0 504 86 0 0 chr6 13964455 13964525 -175315029 + (CA)n Simple_repeat Simple_repeat 2 71 0 2338 133 3 16 chr6 13964525 13964888 -175314666 + L1PB1 LINE L1 5794 6151 0 710 233 57 5 chr6 13965843 13966036 -175313518 - Tigger1 DNA MER2_type -7 2411 2209 213 385 0 0 chr6 13966210 13966376 -175313178 + G-rich Low_complexity Low_complexity 1 166 0 879 161 310 41 chr6 13966972 13967214 -175312340 - AluJo SINE Alu 0 312 6 1800 153 4 4 chr6 13967224 13967498 -175312056 - AluJo SINE Alu 0 312 39 23 0 0 0 chr6 13967503 13967526 -175312028 + AT_rich Low_complexity Low_complexity 1 23 0 1905 158 0 16 chr6 13969139 13969442 -175310112 + AluSx SINE Alu 1 298 -14 475 36 0 0 chr6 13971203 13971259 -175308295 + AluY SINE Alu 2 57 -256 2084 138 0 10 chr6 13971737 13972048 -175307506 + AluSx SINE Alu 1 308 -4 473 217 148 57 chr6 13973383 13973627 -175305927 + L1MC5 LINE L1 7664 7929 -32 181 211 73 128 chr6 13973698 13973807 -175305747 + MIR SINE MIR 37 139 -69 2249 96 3 7 chr6 13974695 13974997 -175304557 + AluSx SINE Alu 2 302 -10 23 0 0 0 chr6 13975010 13975033 -175304521 + AT_rich Low_complexity Low_complexity 1 23 0 1697 152 58 32 chr6 13975200 13975509 -175304045 - MER2 DNA MER2_type -27 318 2 540 251 61 39 chr6 13975550 13975781 -175303773 + L1ME LINE L1 5371 5606 -560 527 296 17 11 chr6 13975981 13976157 -175303397 - MER5B DNA MER1_type -1 177 1 1940 76 64 0 chr6 13976258 13976522 -175303032 + AluY SINE Alu 26 306 -5 752 218 26 13 chr6 13976934 13977090 -175302464 + MIR SINE MIR 13 170 -92 203 404 35 0 chr6 13977237 13977408 -175302146 - L2 LINE L2 -503 2811 2635 226 259 0 0 chr6 13977606 13977660 -175301894 + (TA)n Simple_repeat Simple_repeat 1 54 0 1041 219 5 9 chr6 13980287 13980502 -175299052 - MLT1A2 LTR MaLR -11 363 150 359 217 155 87 chr6 13980653 13980860 -175298694 + HAL1 LINE L1 24 244 -2263 26 50 0 0 chr6 13981226 13981266 -175298288 + AT_rich Low_complexity Low_complexity 1 40 0 1984 150 0 7 chr6 13981315 13981609 -175297945 + AluJb SINE Alu 3 294 -18 24 53 0 0 chr6 13981696 13981734 -175297820 + AT_rich Low_complexity Low_complexity 1 38 0 623 316 67 10 chr6 13982313 13982506 -175297048 - MIR SINE MIR -44 218 15 3127 147 32 26 chr6 13982532 13982951 -175296603 - MER34 LTR ERV1 -1 541 117 1895 142 10 10 chr6 13982951 13983253 -175296301 + AluJo SINE Alu 1 302 -10 3127 147 32 26 chr6 13983253 13983371 -175296183 - MER34 LTR ERV1 -425 117 1 1964 90 181 12 chr6 13983506 13983827 -175295727 - THE1C LTR MaLR 0 375 1 191 253 22 66 chr6 13987288 13987379 -175292175 + L2 LINE L2 3186 3272 0 964 127 19 13 chr6 13987630 13987787 -175291767 + L1PBa LINE L1 1 158 -6705 12810 163 37 15 chr6 13987802 13991665 -175287889 + L1PBa LINE L1 725 4672 -2190 234 254 0 0 chr6 13991668 13991735 -175287819 + L1MC4 LINE L1 6637 6703 -1339 226 235 0 0 chr6 13991693 13991744 -175287810 - L1MC4 LINE L1 -1339 6703 6653 * 204 40 0 0 chr6 13991744 13991769 -175287785 + (CA)n Simple_repeat Simple_repeat 1 25 0 2784 91 3 3 chr6 13991769 13992130 -175287424 + L1PB1 LINE L1 5791 6151 0 3671 144 28 15 chr6 13993068 13993666 -175285888 - Tigger1 DNA MER2_type -7 2411 1806 382 105 53 0 chr6 13993664 13993721 -175285833 - Tigger1 DNA MER2_type -1393 1025 966 * 413 108 0 14 chr6 13993724 13993798 -175285756 + (CCCCCT)n Simple_repeat Simple_repeat 3 75 0 9708 55 7 111 chr6 13994027 13995573 -175283981 + SVA Other Other 2 1386 0 321 343 114 6 chr6 13995582 13995748 -175283806 - MIR SINE MIR -77 185 2 213 180 40 20 chr6 13996401 13996451 -175283103 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr6 13996467 13996489 -175283065 + AT_rich Low_complexity Low_complexity 1 22 0 778 150 7 54 chr6 13996499 13996646 -175282908 + FLAM_C SINE Alu 2 141 -2 5690 124 70 18 chr6 13996963 13997891 -175281663 - Tigger1 DNA MER2_type -1442 976 1 2411 240 69 13 chr6 13998736 13999362 -175280192 - MER67B LTR ERV1 0 661 1 476 139 38 0 chr6 13999362 13999441 -175280113 - MER31B LTR ERV1 -384 82 1 1062 239 52 0 chr6 13999972 14000185 -175279369 + MER58A DNA MER1_type 1 224 0 4180 157 28 15 chr6 14000840 14001579 -175277975 + L1MB2 LINE L1 5422 6170 -1 216 97 0 0 chr6 14002480 14002511 -175277043 + (T)n Simple_repeat Simple_repeat 1 31 0 1613 110 0 5 chr6 14002953 14003171 -175276383 - AluSx SINE Alu -95 217 1 1908 214 13 5 chr6 14003206 14003604 -175275950 - L1M4 LINE L1 -1028 5118 4718 477 276 20 30 chr6 14003580 14003783 -175275771 + L1M4 LINE L1 3419 3619 -2527 * 2740 112 14 12 chr6 14003785 14004204 -175275350 + L1MA2 LINE L1 5885 6304 0 353 155 272 10 chr6 14004230 14004333 -175275221 - MER5A DNA MER1_type -6 183 54 1986 258 35 18 chr6 14004439 14005383 -175274171 + L1M4 LINE L1 3599 4655 -1491 1160 136 0 28 chr6 14005383 14005559 -175273995 + AluJb SINE Alu 132 302 -10 414 346 64 4 chr6 14005562 14005842 -175273712 + L1M4 LINE L1 4650 4946 -1200 1368 217 67 59 chr6 14006270 14006657 -175272897 + MLT1B LTR MaLR 1 390 0 365 288 203 28 chr6 14006840 14007017 -175272537 + MIR SINE MIR 34 241 -21 525 239 33 77 chr6 14008553 14008806 -175270748 - L1ME3A LINE L1 -2 6168 5928 443 181 59 34 chr6 14008814 14008960 -175270594 - L1ME3A LINE L1 -196 5968 5814 319 272 164 28 chr6 14008942 14009229 -175270325 - L1MC5 LINE L1 -25 7936 7611 * 427 256 91 0 chr6 14010023 14010144 -175269410 + MER103 DNA DNA 34 165 -1 1686 98 31 9 chr6 14010467 14010692 -175268862 - MER30 DNA MER1_type 0 230 1 1739 164 18 0 chr6 14010814 14011115 -175268439 + AluJb SINE Alu 1 306 0 474 333 24 0 chr6 14012184 14012394 -175267160 + L1ME3A LINE L1 5611 5825 -345 2159 115 0 3 chr6 14012800 14013096 -175266458 + AluSx SINE Alu 1 295 -17 2539 204 62 6 chr6 14013442 14013970 -175265584 - MER74A LTR ERVL 0 558 1 536 203 16 24 chr6 14014723 14014846 -175264708 - L1MB7 LINE L1 -9 6175 6054 1968 123 29 4 chr6 14014904 14015207 -175264347 - AluSx SINE Alu 0 310 1 26 0 0 0 chr6 14015294 14015320 -175264234 + AT_rich Low_complexity Low_complexity 1 26 0 2383 175 73 2 chr6 14015821 14016243 -175263311 + LTR47A LTR ERVL 1 452 0 2248 99 0 0 chr6 14016357 14016649 -175262905 + AluSg SINE Alu 1 292 -18 372 268 102 0 chr6 14016847 14016974 -175262580 + MIR SINE MIR 59 198 -64 426 310 172 65 chr6 14017385 14018263 -175261291 + L2 LINE L2 2284 3266 -6 2111 110 4 0 chr6 14018621 14018931 -175260623 - AluSx SINE Alu 0 311 1 346 268 65 32 chr6 14019346 14019469 -175260085 + MER5B DNA MER1_type 2 128 -50 210 255 0 153 chr6 14019469 14019567 -175259987 - MIR SINE MIR -90 118 36 330 274 35 53 chr6 14020295 14020408 -175259146 + MIR SINE MIR 54 164 -98 2139 125 0 3 chr6 14020409 14020704 -175258850 + AluSc SINE Alu 1 294 -15 186 43 0 0 chr6 14021445 14021468 -175258086 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1994 130 7 0 chr6 14021742 14022027 -175257527 - AluJb SINE Alu -25 287 1 181 157 0 39 chr6 14022060 14022111 -175257443 + CT-rich Low_complexity Low_complexity 2 50 0 1938 116 25 0 chr6 14022841 14023021 -175256533 - AluSx SINE Alu 0 312 120 282 29 0 0 chr6 14023021 14023056 -175256498 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1938 116 25 0 chr6 14023056 14023180 -175256374 - AluSx SINE Alu -192 120 1 247 250 25 12 chr6 14023181 14023261 -175256293 - L3b LINE CR1 -207 1376 1296 215 319 78 26 chr6 14023595 14023711 -175255843 + L2 LINE L2 3133 3254 -18 2199 108 7 0 chr6 14023717 14024012 -175255542 + AluSx SINE Alu 1 297 -15 302 292 163 22 chr6 14024100 14024278 -175255276 + L2 LINE L2 3108 3310 -3 539 286 182 16 chr6 14024415 14024607 -175254947 + MIR SINE MIR 1 224 -38 592 321 42 23 chr6 14026172 14026480 -175253074 - L2 LINE L2 0 3313 3000 681 273 65 59 chr6 14026652 14027223 -175252331 + L2 LINE L2 2708 3294 -19 1012 229 112 0 chr6 14027494 14027708 -175251846 + MER8 DNA MER2_type 2 239 0 22 0 0 0 chr6 14028666 14028688 -175250866 + AT_rich Low_complexity Low_complexity 1 22 0 455 339 49 32 chr6 14029201 14029549 -175250005 - L2 LINE L2 0 3272 2919 659 321 79 43 chr6 14029710 14030448 -175249106 - L2 LINE L2 -619 2695 1932 196 289 33 0 chr6 14030630 14030720 -175248834 + L2 LINE L2 3221 3313 0 486 250 250 19 chr6 14030724 14030984 -175248570 - MLT1L LTR MaLR -81 534 215 773 272 19 5 chr6 14032246 14032452 -175247102 + MER3 DNA MER1_type 1 209 0 2274 92 3 3 chr6 14032523 14032816 -175246738 - AluSq SINE Alu -20 293 1 437 135 40 0 chr6 14033936 14034010 -175245544 - MADE1 DNA Mariner -3 77 1 1953 92 4 11 chr6 14034476 14034738 -175244816 - AluSc SINE Alu -31 278 19 234 91 0 0 chr6 14035466 14035499 -175244055 + (TC)n Simple_repeat Simple_repeat 2 34 0 264 316 132 6 chr6 14035511 14035685 -175243869 + MIR SINE MIR 61 256 -6 24 0 0 0 chr6 14035863 14035887 -175243667 + AT_rich Low_complexity Low_complexity 1 24 0 192 360 10 10 chr6 14036084 14036184 -175243370 - MIR3 SINE MIR -12 196 97 23 0 0 0 chr6 14037408 14037431 -175242123 + AT_rich Low_complexity Low_complexity 1 23 0 1392 162 97 12 chr6 14037815 14038062 -175241492 + AluJo SINE Alu 11 278 -34 222 143 0 0 chr6 14038073 14038122 -175241432 + (TC)n Simple_repeat Simple_repeat 1 49 0 333 273 0 0 chr6 14038122 14038210 -175241344 + L1MC4 LINE L1 6615 6702 -1340 863 206 10 36 chr6 14039163 14039357 -175240197 + MER5A DNA MER1_type 1 189 0 1937 147 0 0 chr6 14039696 14040006 -175239548 + AluJb SINE Alu 1 310 0 360 0 0 0 chr6 14040148 14040188 -175239366 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr6 14040199 14040222 -175239332 + AT_rich Low_complexity Low_complexity 1 23 0 623 100 20 0 chr6 14040395 14040495 -175239059 + (TAGA)n Simple_repeat Simple_repeat 3 104 0 32 26 0 0 chr6 14042645 14042684 -175236870 + AT_rich Low_complexity Low_complexity 1 39 0 2447 69 3 0 chr6 14042694 14042983 -175236571 + AluSp SINE Alu 1 290 -23 22 35 0 0 chr6 14043699 14043728 -175235826 + AT_rich Low_complexity Low_complexity 1 29 0 236 230 14 40 chr6 14045294 14045368 -175234186 + CT-rich Low_complexity Low_complexity 6 77 0 250 272 61 18 chr6 14047013 14047127 -175232427 - L1ME4a LINE L1 -197 5924 5806 316 267 100 0 chr6 14047217 14047337 -175232217 - L1ME4a LINE L1 -432 5689 5558 3596 116 17 17 chr6 14047451 14047978 -175231576 - MER1A DNA MER1_type 0 527 1 201 314 59 52 chr6 14048268 14048421 -175231133 - L2 LINE L2 -528 2786 2633 367 329 43 6 chr6 14049941 14050105 -175229449 - MIR SINE MIR -80 182 13 2104 133 0 3 chr6 14050141 14050442 -175229112 - AluJb SINE Alu -12 300 1 1425 204 34 67 chr6 14050544 14050766 -175228788 - MLT1A2 LTR MaLR 0 374 169 2171 103 6 39 chr6 14050766 14051077 -175228477 - AluSx SINE Alu -11 301 1 1425 204 34 67 chr6 14051077 14051241 -175228313 - MLT1A2 LTR MaLR -205 169 1 1599 228 66 24 chr6 14052085 14052537 -175227017 - MER74B LTR ERVL -83 539 69 205 337 64 41 chr6 14052987 14053159 -175226395 - L2 LINE L2 -213 3059 2884 188 295 253 0 chr6 14053316 14053411 -175226143 + L3 LINE CR1 432 550 -1027 272 214 0 0 chr6 14053492 14053548 -175226006 + L2 LINE L2 3198 3253 -60 252 0 0 0 chr6 14054100 14054128 -175225426 + (TA)n Simple_repeat Simple_repeat 1 28 0 1635 189 3 7 chr6 14054145 14054430 -175225124 - AluJo SINE Alu -28 284 1 2580 81 0 0 chr6 14054865 14055174 -175224380 + AluSc SINE Alu 1 309 0 1056 141 38 0 chr6 14055350 14055534 -175224020 + L1MA7 LINE L1 6095 6285 -6 2289 108 0 3 chr6 14056217 14056523 -175223031 + AluSx SINE Alu 1 305 -7 2287 117 0 0 chr6 14057154 14057461 -175222093 - AluSg SINE Alu -3 307 1 317 216 137 93 chr6 14057963 14058102 -175221452 - MER91A DNA MER1_type 0 196 52 331 314 45 0 chr6 14058124 14058283 -175221271 - MIR SINE MIR -58 150 35 1177 34 0 27 chr6 14058285 14058434 -175221120 - L1PA5 LINE L1 0 6154 6010 400 238 19 0 chr6 14058671 14058776 -175220778 - MER5A DNA MER1_type -73 116 10 192 250 0 0 chr6 14058856 14058892 -175220662 - L2 LINE L2 -12 3301 3266 242 293 102 20 chr6 14059200 14059262 -175220292 - MIR SINE MIR -33 229 173 1354 101 38 71 chr6 14059262 14059500 -175220054 + MER30 DNA MER1_type 1 230 0 242 293 102 20 chr6 14059500 14059584 -175219970 - MIR SINE MIR -89 173 71 435 339 18 0 chr6 14059674 14059842 -175219712 + MER5A DNA MER1_type 13 183 -6 2381 95 10 3 chr6 14059849 14060155 -175219399 + AluSg SINE Alu 2 309 -1 1612 70 0 0 chr6 14060961 14061147 -175218407 - AluSg/x SINE Alu -20 292 107 275 122 0 0 chr6 14061147 14061188 -175218366 - Alu SINE Alu -259 41 1 219 316 122 20 chr6 14061216 14061314 -175218240 - MER5A DNA MER1_type -75 114 7 1977 93 3 41 chr6 14061428 14061718 -175217836 + AluSq SINE Alu 35 313 0 2254 99 20 0 chr6 14063224 14063516 -175216038 - AluSq SINE Alu -12 301 4 546 226 22 7 chr6 14064108 14064245 -175215309 + MIR SINE MIR 123 261 -1 272 335 27 49 chr6 14064349 14064534 -175215020 - L2 LINE L2 -219 3053 2873 259 308 43 26 chr6 14064952 14065069 -175214485 - L2 LINE L2 -568 2746 2628 1927 141 60 110 chr6 14065731 14066184 -175213370 - MSTB1 LTR MaLR 0 432 3 3659 148 17 22 chr6 14067143 14067746 -175211808 - MER6A DNA MER2_type -5 600 1 252 238 0 0 chr6 14067775 14067838 -175211716 + (CA)n Simple_repeat Simple_repeat 2 64 0 195 42 0 0 chr6 14068328 14068352 -175211202 + (TG)n Simple_repeat Simple_repeat 2 25 0 586 177 234 34 chr6 14069039 14069248 -175210306 + MER5C DNA MER1_type 73 323 -1 396 274 201 38 chr6 14070383 14070671 -175208883 - L3 LINE CR1 -24 1553 1219 1711 182 0 23 chr6 14070744 14071051 -175208503 - AluJb SINE Alu -6 306 7 527 323 14 31 chr6 14071269 14071492 -175208062 + MIR SINE MIR 20 238 -24 213 39 0 0 chr6 14071650 14071676 -175207878 + (T)n Simple_repeat Simple_repeat 1 26 0 1586 55 5 0 chr6 14071868 14072067 -175207487 - L1PB2 LINE L1 -2 6149 5950 914 278 50 20 chr6 14072309 14072627 -175206927 + L2 LINE L2 2393 2727 -587 2161 150 13 20 chr6 14072627 14073020 -175206534 - MLT1B LTR MaLR 0 390 1 914 278 50 20 chr6 14073020 14073101 -175206453 + L2 LINE L2 2727 2804 -510 878 271 61 52 chr6 14073371 14073828 -175205726 + L2 LINE L2 2818 3278 -35 279 0 0 0 chr6 14073831 14073862 -175205692 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 1344 217 47 47 chr6 14074280 14074640 -175204914 + MLT1A1 LTR MaLR 1 360 -5 1414 43 0 0 chr6 14074798 14074962 -175204592 + U1 snRNA snRNA 1 164 -1 293 305 29 9 chr6 14075892 14075997 -175203557 - L2 LINE L2 -8 3305 3199 266 327 18 45 chr6 14076805 14076915 -175202639 + L3 LINE CR1 1470 1576 -1 215 273 0 0 chr6 14077047 14077091 -175202463 + MIR3 SINE MIR 151 194 -14 1168 139 134 19 chr6 14079303 14079512 -175200042 + AluJo SINE Alu 1 233 -79 625 106 32 8 chr6 14079538 14079661 -175199893 + GA-rich Low_complexity Low_complexity 3 128 0 229 280 110 60 chr6 14080653 14080835 -175198719 + MIR SINE MIR 20 210 -52 260 360 28 78 chr6 14081648 14082043 -175197511 - L2 LINE L2 -91 3181 2807 393 270 124 22 chr6 14082248 14082426 -175197128 + MIR SINE MIR 7 202 -60 2305 105 0 0 chr6 14082498 14082793 -175196761 + AluSg1 SINE Alu 1 295 -14 1084 193 22 40 chr6 14083403 14083626 -175195928 + MER20 DNA MER1_type 1 219 0 386 248 144 32 chr6 14084015 14084140 -175195414 - MER58B DNA MER1_type 0 341 203 186 254 42 42 chr6 14084150 14084221 -175195333 - L3 LINE CR1 -487 1090 1020 382 281 43 22 chr6 14084399 14084538 -175195016 + MIR SINE MIR 49 190 -72 343 347 57 10 chr6 14084626 14084819 -175194735 - L3 LINE CR1 -884 693 492 317 276 0 83 chr6 14084836 14084992 -175194562 - L2 LINE L2 -11 3302 3160 2454 85 0 0 chr6 14087482 14087777 -175191777 - AluSc SINE Alu -13 296 2 734 120 17 0 chr6 14088152 14088269 -175191285 - L1MB3 LINE L1 0 6183 6065 397 301 23 45 chr6 14088862 14089038 -175190516 + MIR3 SINE MIR 16 187 -21 434 293 86 17 chr6 14089396 14089628 -175189926 - MIR SINE MIR -3 259 12 1171 172 9 32 chr6 14089899 14090120 -175189434 - MER20 DNA MER1_type -3 216 1 2317 98 20 0 chr6 14091012 14091309 -175188245 + AluSx SINE Alu 1 303 -9 1583 195 4 0 chr6 14091477 14091749 -175187805 + AluJb SINE Alu 1 273 -39 243 143 0 0 chr6 14091749 14091784 -175187770 + (GA)n Simple_repeat Simple_repeat 1 35 0 811 142 24 24 chr6 14091784 14092237 -175187317 + GA-rich Low_complexity Low_complexity 1 453 0 466 264 42 6 chr6 14092504 14092671 -175186883 - MIR SINE MIR -10 252 80 202 200 0 0 chr6 14092692 14092732 -175186822 - MIR SINE MIR -18 244 205 455 282 206 0 chr6 14092748 14092918 -175186636 + MIR SINE MIR 41 245 -17 464 255 138 0 chr6 14093243 14093474 -175186080 - L3 LINE CR1 -111 1466 1204 2023 119 67 25 chr6 14094148 14094508 -175185046 - THE1C LTR MaLR 0 375 1 285 224 0 40 chr6 14095634 14095710 -175183844 + Charlie7 DNA MER1_type 31 103 -2509 2543 181 13 11 chr6 14097087 14097552 -175182002 - MLT1C LTR MaLR 0 467 2 298 308 109 14 chr6 14097630 14097825 -175181729 - Charlie8 DNA MER1_type -1024 1393 95 1813 149 14 17 chr6 14097842 14098130 -175181424 + AluJo SINE Alu 6 292 -20 1858 145 71 0 chr6 14098403 14098727 -175180827 - MER7A DNA MER2_type 0 346 2 207 152 0 0 chr6 14099736 14099782 -175179772 + (CAT)n Simple_repeat Simple_repeat 1 46 0 1897 156 0 7 chr6 14101161 14101489 -175178065 - AluSx SINE Alu 0 326 1 223 266 13 38 chr6 14101621 14101700 -175177854 - MIR SINE MIR -70 192 116 925 168 47 58 chr6 14102043 14102234 -175177320 + MER5A DNA MER1_type 1 189 0 258 239 306 15 chr6 14102249 14102383 -175177171 + MIR SINE MIR 21 193 -69 2113 119 0 39 chr6 14102488 14102798 -175176756 + AluSx SINE Alu 5 302 -10 365 286 20 0 chr6 14102805 14102903 -175176651 - MLT1J2 LTR MaLR -13 437 338 282 256 151 0 chr6 14102975 14103061 -175176493 - MLT1J2 LTR MaLR -285 165 67 5781 121 38 18 chr6 14104346 14104756 -175174798 - L1PA15 LINE L1 -23 6142 5742 9047 37 6 9 chr6 14104756 14105829 -175173725 - MER11C LTR ERVK -2 1069 1 5781 121 38 18 chr6 14105829 14106628 -175172926 - L1PA15 LINE L1 -423 5742 4917 249 319 83 12 chr6 14106676 14106845 -175172709 - MIR3 SINE MIR -3 205 25 351 0 0 0 chr6 14108069 14108108 -175171446 + (TG)n Simple_repeat Simple_repeat 1 39 0 2252 93 0 0 chr6 14108108 14108388 -175171166 - AluSq SINE Alu -33 280 1 1033 172 0 0 chr6 14108462 14108625 -175170929 + FAM SINE Alu 13 175 -10 1746 142 74 40 chr6 14109856 14110181 -175169373 + MER1B DNA MER1_type 2 337 0 2487 73 7 0 chr6 14110259 14110561 -175168993 + AluSq SINE Alu 1 304 -9 1102 232 5 0 chr6 14110709 14110916 -175168638 + MER58A DNA MER1_type 2 209 -15 23 0 0 0 chr6 14112525 14112548 -175167006 + AT_rich Low_complexity Low_complexity 1 23 0 1806 153 4 4 chr6 14112553 14112827 -175166727 + AluJo SINE Alu 39 312 0 991 155 227 64 chr6 14112836 14113100 -175166454 + AluJo SINE Alu 6 312 0 2255 119 0 19 chr6 14114688 14115006 -175164548 + AluSx SINE Alu 1 312 0 282 306 12 12 chr6 14115190 14115275 -175164279 + 7SK RNA RNA 12 96 -97 417 194 19 39 chr6 14115345 14115448 -175164106 - LTR33 LTR ERVL -3 518 418 * 430 175 12 0 chr6 14115441 14115521 -175164033 - MER117 DNA MER1_type -106 91 11 2644 141 26 5 chr6 14115718 14116137 -175163417 - MSTA LTR MaLR 0 428 1 9434 158 43 2 chr6 14116137 14117724 -175161830 - MSTA-int LTR MaLR 0 1651 1 2841 106 29 2 chr6 14117724 14118141 -175161413 - MSTA LTR MaLR 0 428 1 205 214 0 18 chr6 14118237 14118293 -175161261 + (TTAAA)n Simple_repeat Simple_repeat 1 55 0 631 208 79 28 chr6 14118562 14118740 -175160814 - MER5A DNA MER1_type -2 187 1 334 277 68 96 chr6 14118751 14118818 -175160736 - MER5B DNA MER1_type -6 172 105 2324 94 10 0 chr6 14118818 14119117 -175160437 + AluSx SINE Alu 1 302 -10 334 277 68 96 chr6 14119117 14119226 -175160328 - MER5B DNA MER1_type -73 105 1 318 368 25 50 chr6 14120811 14121050 -175158504 - L2 LINE L2 0 3272 3040 192 227 151 50 chr6 14121329 14121448 -175158106 - MIR3 SINE MIR -73 135 5 285 295 107 35 chr6 14121540 14121650 -175157904 - L2 LINE L2 -1333 1981 1880 1020 206 59 0 chr6 14121650 14121854 -175157700 - MER20 DNA MER1_type 0 219 4 285 295 107 35 chr6 14121854 14122004 -175157550 - L2 LINE L2 -1434 1880 1702 250 276 66 0 chr6 14122122 14122198 -175157356 - L2 LINE L2 0 3272 3192 353 228 19 152 chr6 14122198 14122356 -175157198 - MER45A DNA AcHobo -41 137 1 421 279 236 30 chr6 14122587 14123244 -175156310 - L2 LINE L2 -358 2956 2165 269 309 9 55 chr6 14123283 14123393 -175156161 - L2 LINE L2 -25 3288 3184 207 0 0 0 chr6 14123981 14124004 -175155550 + (T)n Simple_repeat Simple_repeat 1 23 0 393 294 80 84 chr6 14124857 14125179 -175154375 + L2 LINE L2 1395 1717 -1597 2281 93 3 3 chr6 14125179 14125470 -175154084 + AluSx SINE Alu 1 291 -21 393 294 80 84 chr6 14125470 14125483 -175154071 + L2 LINE L2 1717 1729 -1585 1667 191 3 3 chr6 14125483 14125765 -175153789 + AluJo SINE Alu 1 282 -30 212 77 26 0 chr6 14125768 14125807 -175153747 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 393 294 80 84 chr6 14125807 14126040 -175153514 + L2 LINE L2 1731 1966 -1348 969 289 111 65 chr6 14126468 14127230 -175152324 + L2 LINE L2 2004 2808 -506 2523 137 44 2 chr6 14127230 14127640 -175151914 - MSTA LTR MaLR 0 428 2 969 289 111 65 chr6 14127640 14127696 -175151858 + L2 LINE L2 2808 2860 -454 455 289 33 110 chr6 14127707 14128008 -175151546 + L2 LINE L2 2995 3272 0 306 0 0 0 chr6 14128581 14128615 -175150939 + (A)n Simple_repeat Simple_repeat 1 34 0 2200 104 0 0 chr6 14128727 14129024 -175150530 + AluSx SINE Alu 1 297 -15 552 222 22 37 chr6 14129118 14129253 -175150301 + MLT1D LTR MaLR 1 133 -372 213 324 14 14 chr6 14129253 14129327 -175150227 + MIR SINE MIR 187 260 -2 283 345 34 34 chr6 14129342 14129461 -175150093 - MIR SINE MIR -68 140 21 2226 212 80 47 chr6 14130280 14130291 -175149263 - MER21B LTR ERV1 -11 852 843 2166 98 0 10 chr6 14130291 14130596 -175148958 + AluSq SINE Alu 1 302 -11 2226 212 80 47 chr6 14130596 14131360 -175148194 - MER21B LTR ERV1 -20 843 1 2178 148 71 34 chr6 14131498 14131746 -175147808 - MSTA LTR MaLR 0 428 158 1592 78 10 0 chr6 14131746 14131952 -175147602 - AluSg/x SINE Alu -5 307 100 2178 148 71 34 chr6 14131952 14132114 -175147440 - MSTA LTR MaLR -270 158 3 1053 174 31 2 chr6 14132251 14132518 -175147036 + MER2 DNA MER2_type 21 345 0 188 35 35 0 chr6 14134639 14134668 -175144886 + (CCCCG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr6 14135728 14135750 -175143804 + AT_rich Low_complexity Low_complexity 1 22 0 296 287 78 17 chr6 14136396 14136511 -175143043 + MIR3 SINE MIR 84 205 -3 2404 76 0 10 chr6 14137232 14137546 -175142008 + AluSx SINE Alu 1 311 -1 195 314 88 66 chr6 14137837 14137974 -175141580 - MIR3 SINE MIR -67 141 2 1716 161 7 7 chr6 14138414 14138706 -175140848 + AluJo SINE Alu 7 298 -14 1806 156 0 17 chr6 14139418 14139720 -175139834 + AluSx SINE Alu 1 297 -15 459 36 0 0 chr6 14141480 14141536 -175138018 + AluY SINE Alu 2 57 -253 2005 135 0 10 chr6 14142014 14142325 -175137229 + AluSx SINE Alu 1 308 -4 420 224 146 57 chr6 14143666 14143912 -175135642 + L1MC5 LINE L1 7664 7931 -30 187 211 73 128 chr6 14143983 14144092 -175135462 + MIR SINE MIR 37 139 -69 2193 111 3 0 chr6 14144979 14145286 -175134268 + AluSq SINE Alu 2 309 -4 381 75 0 0 chr6 14145286 14145339 -175134215 + (TA)n Simple_repeat Simple_repeat 1 53 0 240 333 0 0 chr6 14147407 14147476 -175132078 - MIR SINE MIR -131 131 63 327 49 0 0 chr6 14148856 14148897 -175130657 + (T)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr6 14149550 14149572 -175129982 + AT_rich Low_complexity Low_complexity 1 22 0 207 69 0 0 chr6 14151198 14151227 -175128327 + (A)n Simple_repeat Simple_repeat 1 29 0 2173 89 7 0 chr6 14151467 14151758 -175127796 - AluSc SINE Alu -16 293 1 1533 106 0 74 chr6 14151825 14152081 -175127473 - AluSx SINE Alu -75 237 1 554 227 169 7 chr6 14152282 14152436 -175127118 - MER5A DNA MER1_type -2 187 9 2112 105 3 0 chr6 14152728 14153024 -175126530 - AluSg SINE Alu -13 297 1 294 299 11 11 chr6 14153258 14153345 -175126209 + MIR3 SINE MIR 113 199 -9 1899 122 3 41 chr6 14153929 14154214 -175125340 + L1PB2 LINE L1 5842 6115 -36 2204 97 0 3 chr6 14154214 14154514 -175125040 + AluSq SINE Alu 1 299 -14 1899 122 3 41 chr6 14154514 14154548 -175125006 + L1PB2 LINE L1 6115 6149 -2 464 287 168 10 chr6 14155160 14155369 -175124185 - MIR SINE MIR -19 243 2 198 0 0 0 chr6 14156139 14156161 -175123393 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1737 133 28 28 chr6 14157969 14158255 -175121299 + AluJo SINE Alu 5 290 -22 255 202 220 64 chr6 14158441 14158550 -175121004 - MIR3 SINE MIR -46 162 37 624 273 103 86 chr6 14158651 14159138 -175120416 - MLT1J LTR MaLR -1 510 16 540 173 173 13 chr6 14159458 14159614 -175119940 + MER5A DNA MER1_type 9 189 0 301 302 43 65 chr6 14159772 14159911 -175119643 - MIR SINE MIR -1 261 126 296 280 168 28 chr6 14160064 14160207 -175119347 + MIR3 SINE MIR 30 192 -16 248 234 103 75 chr6 14161276 14161383 -175118171 - L2 LINE L2 -8 3305 3196 1088 198 53 20 chr6 14161422 14161669 -175117885 + MLT1A1 LTR MaLR 6 260 -105 271 275 67 54 chr6 14161981 14162130 -175117424 - MIR SINE MIR -46 216 66 279 271 158 38 chr6 14162326 14162459 -175117095 + L2 LINE L2 3123 3271 -1 230 224 45 0 chr6 14164037 14164104 -175115450 + MER21A LTR ERV1 124 193 -738 24 0 0 0 chr6 14164811 14164835 -175114719 + AT_rich Low_complexity Low_complexity 1 24 0 697 268 35 18 chr6 14166093 14166321 -175113233 + MIR SINE MIR 28 259 -3 478 191 11 22 chr6 14168677 14168766 -175110788 + MER81 DNA DNA 27 114 0 433 329 78 88 chr6 14169467 14169762 -175109792 - L2 LINE L2 -8 3264 2973 539 273 14 28 chr6 14170062 14170205 -175109349 + L2 LINE L2 3173 3313 0 314 286 129 0 chr6 14170394 14170565 -175108989 - L1ME4a LINE L1 -104 6017 5825 1465 252 57 21 chr6 14170633 14171070 -175108484 + L1MC4a LINE L1 5352 5804 -2004 2494 77 0 0 chr6 14171097 14171409 -175108145 + AluSx SINE Alu 1 312 0 482 281 31 6 chr6 14171452 14171612 -175107942 + L1MC4a LINE L1 5796 5959 -1849 203 216 0 39 chr6 14172450 14172501 -175107053 - MIR SINE MIR -62 146 98 428 266 43 29 chr6 14172501 14172708 -175106846 + L1ME LINE L1 4635 4844 -1302 231 190 0 0 chr6 14172709 14172767 -175106787 + (TA)n Simple_repeat Simple_repeat 2 59 0 428 167 60 12 chr6 14172846 14172930 -175106624 + MIR SINE MIR 64 151 -111 2188 95 0 16 chr6 14173179 14173485 -175106069 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr6 14173498 14173521 -175106033 + AT_rich Low_complexity Low_complexity 1 23 0 1657 152 58 32 chr6 14173688 14173997 -175105557 - MER2 DNA MER2_type -27 318 2 518 251 61 39 chr6 14174038 14174269 -175105285 + L1ME LINE L1 5371 5606 -560 473 296 17 11 chr6 14174469 14174645 -175104909 - MER5B DNA MER1_type -1 177 1 1889 68 64 0 chr6 14174746 14175010 -175104544 + AluY SINE Alu 26 306 -5 346 319 53 68 chr6 14175757 14175927 -175103627 + MLT1J LTR MaLR 1 172 -339 2345 149 13 62 chr6 14175927 14176210 -175103344 + Tigger2a DNA MER2_type 2 256 -2452 1967 136 0 13 chr6 14176210 14176520 -175103034 + AluSx SINE Alu 1 306 -6 2345 149 13 62 chr6 14176520 14176691 -175102863 + Tigger2a DNA MER2_type 256 434 0 346 319 53 68 chr6 14176691 14176931 -175102623 + MLT1J LTR MaLR 172 405 -106 680 231 0 14 chr6 14177089 14177232 -175102322 + MER58B DNA MER1_type 195 335 -6 2487 153 56 19 chr6 14178649 14179062 -175100492 + MSTC LTR MaLR 1 428 0 1732 189 175 21 chr6 14179521 14179958 -175099596 + L1MD3 LINE L1 6972 7340 -655 2191 112 0 0 chr6 14179958 14180270 -175099284 + AluSp SINE Alu 1 312 -1 1732 189 175 21 chr6 14180270 14180560 -175098994 + L1MD3 LINE L1 7340 7995 0 * 2988 193 21 121 chr6 14180558 14181498 -175098056 + L1MC4 LINE L1 7209 7995 0 200 331 25 50 chr6 14181502 14181623 -175097931 - L2 LINE L2 -482 2832 2715 263 280 30 10 chr6 14182199 14182299 -175097255 - MLT1E2 LTR MaLR -277 349 248 1575 155 24 76 chr6 14182733 14183062 -175096492 + AluJb SINE Alu 1 312 0 886 262 34 17 chr6 14183110 14183347 -175096207 + MIR SINE MIR 20 260 -2 2137 93 10 10 chr6 14183849 14184160 -175095394 + AluSx SINE Alu 1 311 -1 599 275 58 5 chr6 14184631 14184820 -175094734 + MIR SINE MIR 49 247 -15 2142 90 0 10 chr6 14184893 14185205 -175094349 - AluSc SINE Alu 0 309 1 421 294 118 6 chr6 14185490 14185660 -175093894 - MIR3 SINE MIR 0 208 20 1910 150 7 0 chr6 14186158 14186464 -175093090 + AluSx SINE Alu 1 308 -4 424 308 92 0 chr6 14186545 14186675 -175092879 - MIR SINE MIR -71 191 50 2125 126 0 0 chr6 14186958 14187260 -175092294 + AluSx SINE Alu 1 302 -10 303 234 9 47 chr6 14188143 14188250 -175091304 + L1ME4a LINE L1 5989 6091 -30 258 105 0 0 chr6 14189279 14189317 -175090237 + (CCG)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chr6 14189338 14189363 -175090191 + GC_rich Low_complexity Low_complexity 1 25 0 663 177 34 14 chr6 14189740 14189887 -175089667 - MER89 LTR ERV1 -409 150 1 409 233 110 43 chr6 14189888 14190051 -175089503 - MER5C DNA MER1_type -81 243 70 568 227 22 70 chr6 14190512 14190678 -175088876 - L2 LINE L2 -25 3288 3130 2076 98 11 0 chr6 14190678 14190964 -175088590 + AluSq SINE Alu 1 289 -24 568 227 22 70 chr6 14190964 14190982 -175088572 - L2 LINE L2 -183 3130 3113 216 267 33 0 chr6 14191010 14191070 -175088484 + MIR SINE MIR 174 235 -27 1686 219 66 20 chr6 14191096 14191535 -175088019 - MER65C LTR ERV1 0 461 3 1003 251 83 74 chr6 14191652 14192031 -175087523 + L2 LINE L2 2665 3125 -188 2277 77 7 3 chr6 14192031 14192331 -175087223 - AluSq SINE Alu -12 301 1 1003 251 83 74 chr6 14192331 14192521 -175087033 + L2 LINE L2 3125 3312 -1 249 146 83 0 chr6 14192808 14192856 -175086698 - L3 LINE CR1 -1 1576 1525 541 279 0 7 chr6 14194096 14194243 -175085311 + L1ME LINE L1 47 192 -5878 777 240 8 60 chr6 14194441 14194645 -175084909 - L1M4 LINE L1 -2525 3621 3433 2195 108 0 3 chr6 14194645 14194951 -175084603 + AluSq SINE Alu 1 305 -8 777 240 8 60 chr6 14194951 14195013 -175084541 - L1M4 LINE L1 -2713 3433 3369 1986 124 57 14 chr6 14195020 14195385 -175084169 - L1MA8 LINE L1 -174 6117 5743 889 175 12 0 chr6 14195461 14195621 -175083933 - L1MA8 LINE L1 -529 5771 5610 2581 33 0 0 chr6 14196227 14196527 -175083027 + AluY SINE Alu 2 301 -10 1468 147 55 29 chr6 14196586 14196858 -175082696 + AluJo SINE Alu 3 281 -31 23 68 0 0 chr6 14196859 14196903 -175082651 + AT_rich Low_complexity Low_complexity 1 44 0 2416 133 0 0 chr6 14197017 14197378 -175082176 + MER46B DNA MER2_type 1 236 0 2105 111 3 3 chr6 14197706 14198012 -175081542 + AluSx SINE Alu 1 306 -6 190 302 94 31 chr6 14198025 14198121 -175081433 - MIR SINE MIR -33 229 128 2252 107 0 0 chr6 14198325 14198635 -175080919 - AluSx SINE Alu -2 310 1 745 204 158 0 chr6 14198693 14198889 -175080665 + MER5C DNA MER1_type 1 227 -97 1901 143 3 3 chr6 14199433 14199727 -175079827 + AluJb SINE Alu 5 298 -14 189 156 156 0 chr6 14200238 14200283 -175079271 - L2 LINE L2 0 3272 3221 455 291 28 7 chr6 14200819 14200960 -175078594 + MIR SINE MIR 70 213 -49 370 242 36 85 chr6 14201307 14201472 -175078082 - L2 LINE L2 -1 3312 3156 1309 286 156 22 chr6 14201541 14202119 -175077435 - L2 LINE L2 -393 2921 2267 1464 258 103 58 chr6 14202119 14202855 -175076699 + LTR41 LTR ERVL 5 793 -2 1590 261 150 14 chr6 14202855 14203502 -175076052 - L2 LINE L2 -1037 2277 1543 527 289 68 43 chr6 14203768 14203841 -175075713 + MIR SINE MIR 22 92 -170 183 42 0 0 chr6 14203841 14203865 -175075689 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 527 289 68 43 chr6 14203865 14204026 -175075528 + MIR SINE MIR 92 262 0 2276 99 0 3 chr6 14204072 14204385 -175075169 - AluSx SINE Alu 0 312 1 2265 115 33 16 chr6 14204589 14204953 -175074601 + MSTA LTR MaLR 1 370 -58 570 319 114 19 chr6 14204948 14205308 -175074246 + MLT1J LTR MaLR 110 503 -8 * 2042 97 4 4 chr6 14205671 14205969 -175073585 - AluSc SINE Alu 0 298 1 255 329 0 13 chr6 14206810 14206889 -175072665 + MIR SINE MIR 49 126 -136 192 40 0 0 chr6 14208237 14208262 -175071292 + (T)n Simple_repeat Simple_repeat 1 25 0 2113 107 3 0 chr6 14208433 14208732 -175070822 + AluSx SINE Alu 1 300 -12 345 275 47 129 chr6 14209122 14209315 -175070239 - MIR3 SINE MIR -27 181 5 1961 120 0 0 chr6 14209443 14209750 -175069804 - AluSq SINE Alu 0 307 1 628 208 132 19 chr6 14209753 14209912 -175069642 + MER5B DNA MER1_type 2 178 0 871 134 0 15 chr6 14209929 14210063 -175069491 - FLAM_C SINE Alu -1 132 1 2770 84 3 3 chr6 14210085 14210440 -175069114 - MER1A DNA MER1_type 0 529 175 230 158 0 0 chr6 14210438 14210476 -175069078 - MER1A DNA MER1_type -489 38 1 * 594 182 182 14 chr6 14210530 14210678 -175068876 - MER5A DNA MER1_type -16 173 1 320 62 0 0 chr6 14212629 14212677 -175066877 - L1MB3 LINE L1 0 6183 6136 1788 151 3 22 chr6 14212680 14212991 -175066563 - AluSx SINE Alu -7 305 1 25 0 0 0 chr6 14212997 14213022 -175066532 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr6 14213097 14213132 -175066422 + AT_rich Low_complexity Low_complexity 1 35 0 185 247 0 26 chr6 14213132 14213209 -175066345 + (CATA)n Simple_repeat Simple_repeat 2 76 0 241 163 0 0 chr6 14213219 14213268 -175066286 - L1MC4 LINE L1 -1342 6700 6652 330 118 0 0 chr6 14213281 14213332 -175066222 + MLT2A1 LTR ERVL 394 444 0 951 165 19 0 chr6 14213351 14213509 -175066045 + MSTD LTR MaLR 234 394 -2 1429 186 0 8 chr6 14213616 14213864 -175065690 - AluJo SINE Alu -25 287 42 579 280 37 0 chr6 14213864 14214107 -175065447 - Charlie4a DNA MER1_type -72 436 185 922 189 52 24 chr6 14214107 14214319 -175065235 + AluJo SINE Alu 87 304 -8 868 178 61 11 chr6 14214323 14214503 -175065051 - Charlie4a DNA MER1_type -319 189 1 279 0 0 0 chr6 14215033 14215064 -175064490 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1852 139 0 23 chr6 14217883 14218186 -175061368 + AluJb SINE Alu 2 297 -15 237 307 129 0 chr6 14218359 14218460 -175061094 + MIR3 SINE MIR 88 201 -7 2291 84 3 0 chr6 14220503 14220800 -175058754 + AluSg SINE Alu 1 298 -12 283 227 53 40 chr6 14220851 14220926 -175058628 + MIR SINE MIR 55 130 -78 286 233 47 47 chr6 14220947 14221033 -175058521 + MIR SINE MIR 20 105 -103 476 300 32 25 chr6 14221721 14221919 -175057635 + MIR SINE MIR 20 218 -44 21 0 0 0 chr6 14222943 14222964 -175056590 + AT_rich Low_complexity Low_complexity 1 21 0 2106 123 0 0 chr6 14223019 14223327 -175056227 + AluY SINE Alu 1 308 -3 339 113 0 0 chr6 14224049 14224102 -175055452 + (TG)n Simple_repeat Simple_repeat 2 54 0 216 0 0 0 chr6 14224601 14224625 -175054929 + (T)n Simple_repeat Simple_repeat 1 24 0 1437 130 63 76 chr6 14226799 14226915 -175052639 + AluJo SINE Alu 1 117 -195 405 0 0 0 chr6 14226915 14226960 -175052594 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1437 130 63 76 chr6 14226960 14227158 -175052396 + AluJo SINE Alu 117 311 -1 1189 155 22 104 chr6 14227210 14227382 -175052172 - AluJo SINE Alu -3 309 173 2177 94 0 0 chr6 14227382 14227670 -175051884 - AluSg SINE Alu -22 288 1 1189 155 22 104 chr6 14227670 14227814 -175051740 - AluJo SINE Alu -139 173 19 23 0 0 0 chr6 14227960 14227983 -175051571 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr6 14228132 14228184 -175051370 + AT_rich Low_complexity Low_complexity 1 52 0 32 43 0 0 chr6 14229727 14229773 -175049781 + AT_rich Low_complexity Low_complexity 1 46 0 380 92 10 194 chr6 14229993 14230091 -175049463 - MADE1 DNA Mariner 0 80 1 181 325 32 81 chr6 14230107 14230230 -175049324 + L2 LINE L2 3145 3261 -11 773 241 162 50 chr6 14230330 14230437 -175049117 + L1ME4a LINE L1 5634 5728 -393 1419 174 94 4 chr6 14230437 14230713 -175048841 + AluJo SINE Alu 1 301 -11 773 241 162 50 chr6 14230713 14231044 -175048510 + L1ME4a LINE L1 5728 6121 0 357 109 0 0 chr6 14231721 14231776 -175047778 + (TG)n Simple_repeat Simple_repeat 2 56 0 340 303 105 70 chr6 14234118 14234346 -175045208 - L2 LINE L2 -49 3223 2988 324 0 0 0 chr6 14234775 14234811 -175044743 + (CA)n Simple_repeat Simple_repeat 2 37 0 701 231 89 62 chr6 14235054 14235279 -175044275 - MIR SINE MIR -3 259 29 390 21 0 0 chr6 14235305 14235352 -175044202 + (TG)n Simple_repeat Simple_repeat 2 48 0 1945 135 3 10 chr6 14235352 14235648 -175043906 - AluSx SINE Alu -18 294 1 1525 103 7 73 chr6 14235657 14235771 -175043783 - L1MA5A LINE L1 -3 6294 6174 2054 112 3 26 chr6 14235771 14236075 -175043479 - AluSp SINE Alu -12 301 5 1525 103 7 73 chr6 14236075 14236233 -175043321 - L1MA5A LINE L1 -123 6174 6040 418 274 51 57 chr6 14238068 14238243 -175041311 + Charlie8 DNA MER1_type 92 265 -2152 1804 189 177 16 chr6 14238265 14238688 -175040866 - MLT1E2 LTR MaLR 0 626 136 294 268 100 22 chr6 14239142 14239284 -175040270 - MIR SINE MIR -38 170 21 438 295 89 67 chr6 14240247 14240772 -175038782 + LTR67 LTR ERVL 2 538 -19 182 405 9 9 chr6 14240885 14240996 -175038558 + MIR3 SINE MIR 6 116 -92 * 303 257 177 0 chr6 14240979 14241092 -175038462 + MIR SINE MIR 119 251 -11 188 304 72 43 chr6 14241193 14241262 -175038292 + MIR SINE MIR 8 78 -184 181 128 128 0 chr6 14242379 14242418 -175037136 - MIR SINE MIR -117 145 102 408 88 0 0 chr6 14242934 14242991 -175036563 + (CA)n Simple_repeat Simple_repeat 2 58 0 2624 103 5 14 chr6 14243311 14243678 -175035876 + THE1B LTR MaLR 1 364 0 4173 55 2 0 chr6 14243735 14244241 -175035313 - L1PA10 LINE L1 -11 6157 5651 1393 249 40 17 chr6 14244346 14244683 -175034871 + MER119 DNA MER1_type 1 345 -238 1053 138 12 0 chr6 14244683 14244843 -175034711 + MER93b LTR ERV1 1 162 -211 649 208 8 0 chr6 14244854 14244974 -175034580 + MER93a LTR ERV1 282 402 0 782 201 41 55 chr6 14244989 14245017 -175034537 + MER119 DNA MER1_type 367 394 -189 2036 105 3 3 chr6 14245017 14245295 -175034259 + AluSx SINE Alu 7 287 -25 243 61 0 0 chr6 14245295 14245328 -175034226 + (CTAAA)n Simple_repeat Simple_repeat 3 35 0 782 201 41 55 chr6 14245335 14245525 -175034029 + MER119 DNA MER1_type 394 582 -1 906 115 0 0 chr6 14247129 14247259 -175032295 - AluSp/q SINE Alu -12 301 172 13564 61 2 1 chr6 14248348 14250843 -175028711 + L1PA6 LINE L1 3652 6153 -1 180 0 0 0 chr6 14251344 14251364 -175028190 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1012 90 0 0 chr6 14251377 14251510 -175028044 + AluJo/FLAM SINE Alu 1 133 -179 1548 184 20 3 chr6 14251512 14251811 -175027743 + AluJo SINE Alu 1 304 -8 435 173 0 0 chr6 14251814 14251895 -175027659 + GA-rich Low_complexity Low_complexity 4 84 0 535 243 18 0 chr6 14251895 14252006 -175027548 + MIR SINE MIR 144 256 -6 374 329 7 7 chr6 14252149 14252289 -175027265 + L3b LINE CR1 1209 1348 -235 1773 94 0 0 chr6 14252361 14252596 -175026958 + AluSg/x SINE Alu 76 310 0 564 284 135 18 chr6 14252710 14252932 -175026622 + MIR SINE MIR 2 249 -13 1479 172 79 7 chr6 14253151 14253442 -175026112 + AluJo SINE Alu 1 312 0 21 36 0 0 chr6 14253519 14253547 -175026007 + AT_rich Low_complexity Low_complexity 1 28 0 1745 171 0 20 chr6 14253842 14254141 -175025413 + AluJo SINE Alu 1 293 -19 2107 126 0 16 chr6 14254142 14254459 -175025095 + AluSx SINE Alu 1 312 0 2406 62 7 0 chr6 14254837 14255145 -175024409 - AluY SINE Alu -1 310 1 229 237 230 22 chr6 14255285 14255420 -175024134 + L1MC4a LINE L1 5815 5977 -1831 1775 150 0 55 chr6 14255535 14255710 -175023844 - AluJo SINE Alu -4 308 158 2204 89 7 0 chr6 14255710 14256001 -175023553 - AluSx SINE Alu -19 293 1 1775 150 0 55 chr6 14256001 14256151 -175023403 - AluJo SINE Alu -154 158 1 241 170 0 21 chr6 14256158 14256205 -175023349 - AluJ/FLAM SINE Alu -1 132 87 22 56 0 0 chr6 14256255 14256291 -175023263 + AT_rich Low_complexity Low_complexity 1 36 0 395 246 156 8 chr6 14256604 14256726 -175022828 + MIR SINE MIR 69 208 -54 381 279 211 20 chr6 14257238 14257442 -175022112 - MIR SINE MIR 0 262 20 1830 201 113 14 chr6 14257578 14258010 -175021544 + MLT1D LTR MaLR 31 505 0 623 137 0 0 chr6 14258211 14258306 -175021248 - AluJ/FLAM SINE Alu -216 96 2 465 216 0 17 chr6 14258308 14258424 -175021130 + L1ME2 LINE L1 5579 5692 -474 459 218 36 9 chr6 14259197 14259307 -175020247 + MIR SINE MIR 92 204 -58 512 180 78 5 chr6 14259454 14259584 -175019970 + L1ME2 LINE L1 6039 6334 0 2249 217 48 25 chr6 14260062 14260081 -175019473 + L1ME1 LINE L1 5560 5577 -589 1327 184 63 57 chr6 14260081 14260380 -175019174 - AluJb SINE Alu 0 302 2 2249 217 48 25 chr6 14260380 14260778 -175018776 + L1ME1 LINE L1 5577 5996 -170 186 103 0 0 chr6 14260778 14260807 -175018747 + (CTGGGG)n Simple_repeat Simple_repeat 2 30 0 2249 217 48 25 chr6 14260807 14260978 -175018576 + L1ME1 LINE L1 5996 6162 -4 305 325 29 53 chr6 14262261 14262467 -175017087 + L1MC5 LINE L1 7478 7678 -283 208 222 0 0 chr6 14262467 14262503 -175017051 + polypurine Low_complexity Low_complexity 4 39 0 4411 197 25 14 chr6 14262608 14264037 -175015517 + L1MB7 LINE L1 4345 5793 -391 1496 135 66 143 chr6 14264037 14264178 -175015376 - MER7A DNA MER2_type -2692 346 196 2307 82 3 13 chr6 14264178 14264493 -175015061 - AluSx SINE Alu 0 312 1 1496 135 66 143 chr6 14264493 14264728 -175014826 - MER7A DNA MER2_type -2842 196 1 4411 197 25 14 chr6 14264728 14265040 -175014514 + L1MB7 LINE L1 5793 6100 -84 254 233 41 55 chr6 14265363 14265436 -175014118 - MIR3 SINE MIR -46 162 91 249 339 161 0 chr6 14265537 14265667 -175013887 + MIR SINE MIR 49 199 -63 23 0 0 0 chr6 14265985 14266008 -175013546 + AT_rich Low_complexity Low_complexity 1 23 0 1160 177 139 4 chr6 14266348 14266614 -175012940 - MER33 DNA MER1_type -22 302 1 837 203 31 6 chr6 14267958 14268121 -175011433 + MLT1J LTR MaLR 30 196 -315 263 255 64 11 chr6 14268166 14268260 -175011294 + MLT1J LTR MaLR 291 389 -122 1854 124 4 4 chr6 14269877 14270151 -175009403 + AluSx SINE Alu 7 280 -32 1034 97 23 6 chr6 14270157 14270332 -175009222 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 542 167 9 0 chr6 14270355 14270463 -175009091 + GA-rich Low_complexity Low_complexity 4 112 0 306 272 115 16 chr6 14270464 14270707 -175008847 - HAL1b LINE L1 -28 1320 1054 2199 105 0 6 chr6 14270708 14271021 -175008533 + AluY SINE Alu 1 311 0 180 0 0 0 chr6 14271074 14271094 -175008460 + (T)n Simple_repeat Simple_repeat 1 20 0 1614 142 12 0 chr6 14271391 14271645 -175007909 + AluSp SINE Alu 38 294 -19 399 128 35 0 chr6 14271646 14271732 -175007822 + GA-rich Low_complexity Low_complexity 1 89 0 2205 103 0 0 chr6 14272360 14272660 -175006894 - AluSx SINE Alu -12 300 1 763 280 58 0 chr6 14272942 14273167 -175006387 + MIR SINE MIR 21 258 -4 2279 130 60 0 chr6 14273199 14273567 -175005987 + MLT1B LTR MaLR 1 390 0 549 264 191 14 chr6 14275565 14275785 -175003769 + MIR SINE MIR 3 261 -1 522 323 97 56 chr6 14276904 14277022 -175002532 - L2 LINE L2 0 3313 3201 1694 136 74 52 chr6 14277022 14277389 -175002165 + THE1C LTR MaLR 1 375 0 522 323 97 56 chr6 14277389 14278004 -175001550 - L2 LINE L2 -112 3201 2494 2148 51 0 0 chr6 14278243 14278500 -175001054 - AluY SINE Alu -34 277 21 267 347 59 41 chr6 14279744 14279914 -174999640 - MIR3 SINE MIR -6 202 30 676 315 85 32 chr6 14280436 14281179 -174998375 + L2 LINE L2 2505 3295 -18 384 323 103 27 chr6 14281856 14282079 -174997475 + L1ME4a LINE L1 5518 5757 -364 304 257 29 0 chr6 14282081 14282151 -174997403 + MIR SINE MIR 187 258 -4 1808 149 0 32 chr6 14282273 14282589 -174996965 + AluJo SINE Alu 1 306 -6 194 161 0 18 chr6 14283153 14283209 -174996345 + (CA)n Simple_repeat Simple_repeat 1 55 0 235 236 0 18 chr6 14284272 14284327 -174995227 + Tigger5 DNA MER2_type 2 55 -2268 397 200 33 11 chr6 14284332 14284422 -174995132 + Tigger5 DNA MER2_type 2231 2322 -1 206 381 81 40 chr6 14284844 14284913 -174994641 - L3 LINE CR1 -33 1544 1479 2090 128 3 0 chr6 14284913 14285225 -174994329 - AluSp SINE Alu 0 313 1 206 381 81 40 chr6 14285225 14285378 -174994176 - L3 LINE CR1 -98 1479 1313 213 39 0 0 chr6 14285410 14285436 -174994118 + (ATG)n Simple_repeat Simple_repeat 3 28 0 540 246 175 52 chr6 14285576 14285844 -174993710 + L1ME4a LINE L1 5787 6087 -34 1017 234 4 58 chr6 14285950 14286021 -174993533 - MIR SINE MIR -8 254 181 1787 173 0 3 chr6 14286021 14286327 -174993227 - AluJo SINE Alu -7 305 1 1017 234 4 58 chr6 14286327 14286512 -174993042 - MIR SINE MIR -81 181 12 1134 68 115 133 chr6 14286839 14287073 -174992481 + MER30 DNA MER1_type 1 230 0 552 267 68 0 chr6 14287920 14288081 -174991473 + MIR SINE MIR 12 183 -79 1697 160 32 0 chr6 14288440 14288722 -174990832 + AluJb SINE Alu 1 291 -21 397 219 103 32 chr6 14290718 14290873 -174988681 - MER112 DNA MER1_type -23 237 72 217 227 53 13 chr6 14290878 14290953 -174988601 + (CATA)n Simple_repeat Simple_repeat 3 80 0 663 271 31 75 chr6 14290961 14291216 -174988338 + MLT1G1 LTR MaLR 1 178 -352 2042 124 0 0 chr6 14291216 14291541 -174988013 + AluSx SINE Alu 1 312 0 663 271 31 75 chr6 14291541 14291581 -174987973 + MLT1G1 LTR MaLR 178 218 -312 415 299 21 42 chr6 14292031 14292175 -174987379 - MIR SINE MIR -119 143 3 463 234 128 14 chr6 14292304 14292458 -174987096 - MIR SINE MIR -63 145 7 1478 155 89 24 chr6 14293277 14293568 -174985986 - AluJo SINE Alu -2 310 1 1104 161 40 67 chr6 14294135 14294180 -174985374 - MER20 DNA MER1_type -1 218 173 2100 113 7 3 chr6 14294180 14294480 -174985074 - AluSq SINE Alu -12 301 1 1104 161 40 67 chr6 14294480 14294658 -174984896 - MER20 DNA MER1_type -46 173 1 215 133 0 44 chr6 14296356 14296401 -174983153 + L2 LINE L2 2934 2976 -337 531 280 31 16 chr6 14297485 14297728 -174981826 - L1MC4a LINE L1 -193 5928 5679 1172 190 0 0 chr6 14298452 14298652 -174980902 + MER3 DNA MER1_type 10 209 0 217 206 250 0 chr6 14298910 14298978 -174980576 - L2 LINE L2 0 3272 3188 25 0 0 0 chr6 14299621 14299646 -174979908 + AT_rich Low_complexity Low_complexity 1 25 0 192 289 58 0 chr6 14299750 14299802 -174979752 - MIR SINE MIR -65 143 89 401 213 25 0 chr6 14300570 14300650 -174978904 + FLAM_A SINE Alu 2 83 -59 452 248 32 0 chr6 14300674 14300799 -174978755 - MIR SINE MIR -12 250 122 587 283 28 39 chr6 14300834 14301014 -174978540 - MER5B DNA MER1_type 0 178 1 256 277 76 50 chr6 14301014 14301103 -174978451 - MIR SINE MIR -169 93 2 2162 108 3 7 chr6 14301247 14301552 -174978002 - AluSq SINE Alu -9 304 1 226 169 39 39 chr6 14302546 14302623 -174976931 + L1MA8 LINE L1 6090 6166 -125 3254 138 16 67 chr6 14302628 14303236 -174976318 - MER6A DNA MER2_type -1 604 28 412 89 0 0 chr6 14303239 14303295 -174976259 + L1MA8 LINE L1 6168 6223 -68 1166 189 13 21 chr6 14303295 14303533 -174976021 + Tigger1 DNA MER2_type 1 236 -2182 * 8756 97 38 8 chr6 14303511 14304595 -174974959 + Tigger1 DNA MER2_type 960 2087 -331 2266 102 0 0 chr6 14304595 14304900 -174974654 + AluSq SINE Alu 1 305 -8 8756 97 38 8 chr6 14304900 14305048 -174974506 + Tigger1 DNA MER2_type 2087 2229 -189 3473 116 6 6 chr6 14305050 14305558 -174973996 + L1PA14 LINE L1 5620 6127 -34 21 0 0 0 chr6 14305686 14305707 -174973847 + AT_rich Low_complexity Low_complexity 1 21 0 954 161 102 0 chr6 14305736 14305922 -174973632 + Tigger1 DNA MER2_type 2213 2417 -1 235 178 0 27 chr6 14305922 14305995 -174973559 + L1MA7 LINE L1 6221 6291 0 232 125 25 25 chr6 14306692 14306732 -174972822 + L1MCa LINE L1 482 521 -5905 1511 192 84 9 chr6 14308148 14308481 -174971073 - MLT1C LTR MaLR -2 465 108 2199 108 0 13 chr6 14308516 14308832 -174970722 + AluSx SINE Alu 1 312 0 1750 142 0 14 chr6 14310086 14310368 -174969186 + AluJo SINE Alu 21 298 -14 2215 133 36 30 chr6 14310580 14310942 -174968612 + THE1B LTR MaLR 1 364 0 2571 197 24 37 chr6 14311436 14311983 -174967571 - MER68 LTR ERV1 0 562 23 259 226 161 21 chr6 14312178 14312271 -174967283 - MIR3 SINE MIR -10 198 93 239 111 44 22 chr6 14312722 14312767 -174966787 - L1PA15-16 LINE L1 -6103 746 701 512 280 65 23 chr6 14313229 14313443 -174966111 + L1MC4 LINE L1 7635 7857 -185 983 185 6 17 chr6 14313457 14313635 -174965919 - MLT1A1 LTR MaLR -8 357 182 259 149 0 0 chr6 14313829 14313876 -174965678 + L1MC4 LINE L1 7581 7627 -415 189 307 53 13 chr6 14313883 14313958 -174965596 + MIR SINE MIR 65 142 -66 377 248 43 8 chr6 14314061 14314178 -174965376 - MER46C DNA MER2_type -159 179 59 1405 192 84 9 chr6 14366052 14366385 -174913169 - MLT1C LTR MaLR -2 465 108 2357 108 0 13 chr6 14366420 14366736 -174912818 + AluSx SINE Alu 1 312 0 1888 142 0 14 chr6 14367991 14368273 -174911281 + AluJo SINE Alu 21 298 -14 2241 133 36 30 chr6 14368486 14368848 -174910706 + THE1B LTR MaLR 1 364 0 2409 197 24 37 chr6 14369342 14369889 -174909665 - MER68 LTR ERV1 0 562 23 265 226 161 21 chr6 14370084 14370177 -174909377 - MIR3 SINE MIR -10 198 93 484 280 65 23 chr6 14371135 14371349 -174908205 + L1MC4 LINE L1 7635 7857 -185 935 185 6 17 chr6 14371363 14371541 -174908013 - MLT1A1 LTR MaLR -8 357 182 245 149 0 0 chr6 14371735 14371782 -174907772 + L1MC4 LINE L1 7581 7627 -415 210 293 53 13 chr6 14371789 14371864 -174907690 + MIR SINE MIR 65 142 -66 366 241 76 35 chr6 14371967 14372112 -174907442 - MER46C DNA MER2_type -159 179 29 322 381 42 24 chr6 14372225 14372393 -174907161 + L2 LINE L2 3102 3272 0 459 270 175 0 chr6 14372622 14372822 -174906732 - MIR SINE MIR -6 256 22 2521 158 42 7 chr6 14372869 14373318 -174906236 + MLT1C LTR MaLR 3 467 0 237 83 0 0 chr6 14374074 14374110 -174905444 + (CA)n Simple_repeat Simple_repeat 2 37 0 2084 131 0 35 chr6 14375129 14375441 -174904113 - AluJb SINE Alu -11 301 1 185 297 149 0 chr6 14376237 14376311 -174903243 + L2 LINE L2 3174 3258 -14 2023 128 0 3 chr6 14377072 14377383 -174902171 - AluSg SINE Alu 0 310 1 530 232 49 21 chr6 14377486 14377628 -174901926 + MIR SINE MIR 35 180 -82 297 0 0 0 chr6 14377724 14377757 -174901797 + (A)n Simple_repeat Simple_repeat 1 33 0 1154 230 52 68 chr6 14377947 14378090 -174901464 + MSTD LTR MaLR 1 145 -251 6273 82 16 40 chr6 14378090 14378825 -174900729 + L1PA10 LINE L1 4759 5452 -716 2332 111 0 0 chr6 14378825 14379122 -174900432 + AluSx SINE Alu 4 300 -12 6273 82 16 40 chr6 14379122 14379812 -174899742 + L1PA10 LINE L1 5452 6157 -11 1154 230 52 68 chr6 14379812 14380068 -174899486 + MSTD LTR MaLR 145 394 -2 353 255 226 13 chr6 14380946 14381100 -174898454 + MIR SINE MIR 4 192 -60 779 210 13 0 chr6 14382327 14382484 -174897070 - MER3 DNA MER1_type -50 159 1 327 177 78 106 chr6 14382551 14382692 -174896862 - MER112 DNA MER1_type -34 226 90 1567 201 29 27 chr6 14383495 14383832 -174895722 + MLT2D LTR ERVL 1 357 -40 270 0 0 0 chr6 14383832 14383862 -174895692 + (TG)n Simple_repeat Simple_repeat 2 31 0 1567 201 29 27 chr6 14383862 14383890 -174895664 + MLT2D LTR ERVL 357 383 -14 207 292 10 31 chr6 14383913 14384009 -174895545 + L2 LINE L2 2996 3089 -183 1457 72 106 0 chr6 14384089 14384297 -174895257 + MER30 DNA MER1_type 1 230 0 667 198 153 0 chr6 14384326 14384483 -174895071 + MER5A DNA MER1_type 9 189 0 661 234 0 0 chr6 14384507 14384648 -174894906 - MER5B DNA MER1_type -37 141 1 274 270 52 26 chr6 14384651 14384766 -174894788 - MIR SINE MIR -56 152 35 285 209 0 0 chr6 14385863 14385930 -174893624 + (CA)n Simple_repeat Simple_repeat 1 67 0 412 312 27 24 chr6 14386203 14386367 -174893187 - MIR3 SINE MIR -6 202 36 22 56 0 0 chr6 14387015 14387051 -174892503 + AT_rich Low_complexity Low_complexity 1 36 0 575 264 76 71 chr6 14387052 14387472 -174892082 - L1ME4a LINE L1 -66 6055 5634 228 291 68 29 chr6 14387544 14387647 -174891907 + MIR SINE MIR 24 131 -77 317 294 59 39 chr6 14388726 14388879 -174890675 + MIR SINE MIR 101 256 -6 1130 156 28 47 chr6 14390733 14390861 -174888693 + MER3 DNA MER1_type 2 126 -83 2827 71 3 0 chr6 14390861 14391215 -174888339 - THE1A LTR MaLR 0 355 1 1130 156 28 47 chr6 14391215 14391298 -174888256 + MER3 DNA MER1_type 126 209 0 206 261 0 0 chr6 14391306 14391352 -174888202 + L2 LINE L2 3222 3267 -5 481 206 46 15 chr6 14391448 14391579 -174887975 - MIR SINE MIR -85 177 43 2334 113 3 0 chr6 14393055 14393366 -174886188 + AluSp SINE Alu 2 313 0 3814 209 0 13 chr6 14394017 14394248 -174885306 + L1ME1 LINE L1 5270 5504 -680 2140 120 7 14 chr6 14394248 14394384 -174885170 + AluSx SINE Alu 1 136 -176 2158 94 0 40 chr6 14394384 14394719 -174884835 + AluSg SINE Alu 1 310 0 2140 120 7 14 chr6 14394719 14394874 -174884680 + AluSx SINE Alu 136 290 -22 3814 209 0 13 chr6 14394874 14395562 -174883992 + L1ME1 LINE L1 5504 6184 0 1026 115 120 11 chr6 14396119 14396159 -174883395 - MLT2D LTR ERVL 0 414 380 396 0 0 0 chr6 14396159 14396203 -174883351 + (TG)n Simple_repeat Simple_repeat 2 45 0 1026 115 120 11 chr6 14396203 14396270 -174883284 - MLT2D LTR ERVL -34 380 322 222 37 0 0 chr6 14396270 14396297 -174883257 + (CAGG)n Simple_repeat Simple_repeat 3 29 0 1026 115 120 11 chr6 14396297 14396371 -174883183 - MLT2D LTR ERVL -92 322 212 24 0 0 0 chr6 14396579 14396603 -174882951 + AT_rich Low_complexity Low_complexity 1 24 0 2093 148 7 0 chr6 14396726 14397036 -174882518 + AluSx SINE Alu 1 312 0 2201 110 7 10 chr6 14397071 14397379 -174882175 - AluSq SINE Alu -6 307 1 24 32 0 0 chr6 14398004 14398035 -174881519 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr6 14398130 14398156 -174881398 + AT_rich Low_complexity Low_complexity 1 26 0 315 232 89 27 chr6 14398252 14398364 -174881190 - MIR SINE MIR -70 192 74 276 285 200 0 chr6 14399394 14399459 -174880095 + MER5A DNA MER1_type 33 84 -105 1576 167 104 0 chr6 14399459 14399728 -174879826 - AluJo SINE Alu -15 297 1 276 285 200 0 chr6 14399728 14399792 -174879762 + MER5A DNA MER1_type 84 188 -1 759 308 64 31 chr6 14399895 14400044 -174879510 - L2 LINE L2 0 3313 3170 192 40 0 0 chr6 14400044 14400069 -174879485 + (CAAG)n Simple_repeat Simple_repeat 3 27 0 759 308 64 31 chr6 14400069 14400500 -174879054 - L2 LINE L2 -143 3170 2704 234 0 0 0 chr6 14400500 14400526 -174879028 + (CA)n Simple_repeat Simple_repeat 2 27 0 759 308 64 31 chr6 14400526 14400611 -174878943 - L2 LINE L2 -609 2704 2623 736 228 74 89 chr6 14400724 14401118 -174878436 + L1ME4a LINE L1 5574 5961 -160 74 79 0 0 chr6 14401131 14401296 -174878258 + AT_rich Low_complexity Low_complexity 1 165 0 235 253 27 13 chr6 14401296 14401371 -174878183 + L1MC/D LINE L1 5853 5928 -1880 2175 115 0 3 chr6 14401392 14401678 -174877876 + AluSx SINE Alu 1 285 -27 228 86 0 0 chr6 14401678 14401713 -174877841 + (TTAAA)n Simple_repeat Simple_repeat 3 37 0 23 0 0 0 chr6 14401744 14401767 -174877787 + AT_rich Low_complexity Low_complexity 1 23 0 259 168 53 0 chr6 14401811 14401906 -174877648 + (TA)n Simple_repeat Simple_repeat 2 101 0 442 288 126 11 chr6 14402710 14402901 -174876653 + MIR SINE MIR 35 247 -15 21 36 0 0 chr6 14406196 14406224 -174873330 + GC_rich Low_complexity Low_complexity 1 28 0 191 59 0 29 chr6 14406621 14406655 -174872899 + (CCG)n Simple_repeat Simple_repeat 2 34 0 22 94 0 0 chr6 14406672 14406736 -174872818 + GC_rich Low_complexity Low_complexity 1 64 0 459 278 105 10 chr6 14406961 14407170 -174872384 - MIR SINE MIR -20 242 14 402 219 0 67 chr6 14407603 14407708 -174871846 + L2 LINE L2 3216 3313 0 743 233 90 9 chr6 14408259 14408482 -174871072 + MIR SINE MIR 12 252 -10 1448 183 30 34 chr6 14408647 14408942 -174870612 + AluJo SINE Alu 1 294 -18 975 277 132 19 chr6 14409057 14409625 -174869929 + L2 LINE L2 2332 3039 -274 186 43 0 0 chr6 14409625 14409648 -174869906 + (CA)n Simple_repeat Simple_repeat 2 24 0 975 277 132 19 chr6 14409648 14409955 -174869599 + L2 LINE L2 3039 3310 -3 2360 82 0 7 chr6 14410862 14411184 -174868370 - AluY SINE Alu 0 311 1 1071 157 41 20 chr6 14411378 14411575 -174867979 + AluJo SINE Alu 85 285 -27 24 67 0 0 chr6 14411577 14411622 -174867932 + AT_rich Low_complexity Low_complexity 1 45 0 889 145 0 0 chr6 14412219 14412350 -174867204 - FLAM_C SINE Alu -2 131 1 232 246 229 39 chr6 14412365 14412544 -174867010 - MIR SINE MIR -48 214 2 552 292 114 40 chr6 14412764 14413430 -174866124 + L2 LINE L2 2589 3313 0 2158 63 81 18 chr6 14413451 14413736 -174865818 - AluSx SINE Alu -9 303 1 258 151 66 142 chr6 14413854 14413960 -174865594 - L1MB3 LINE L1 -1 6179 6082 22 35 0 0 chr6 14414690 14414719 -174864835 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr6 14415630 14415651 -174863903 + (CA)n Simple_repeat Simple_repeat 2 22 0 1050 285 99 40 chr6 14415803 14416777 -174862777 + L1ME3 LINE L1 2639 3555 -2591 2343 57 7 0 chr6 14416777 14417081 -174862473 + AluY SINE Alu 1 306 0 1050 285 99 40 chr6 14417081 14417541 -174862013 + L1ME3 LINE L1 3555 3987 -2159 1693 112 123 11 chr6 14417541 14417810 -174861744 - AluSg1 SINE Alu -10 299 1 1050 285 99 40 chr6 14417810 14418092 -174861462 + L1ME3 LINE L1 3987 4507 -1639 426 218 122 131 chr6 14418183 14418528 -174861026 - MLT1H LTR MaLR 0 549 167 2197 104 0 10 chr6 14418528 14418827 -174860727 - AluSx SINE Alu -16 296 1 426 218 122 131 chr6 14418827 14418956 -174860598 - MLT1H LTR MaLR -382 167 38 352 264 56 34 chr6 14419028 14419206 -174860348 + L1ME3 LINE L1 4747 4928 -1218 1527 186 139 65 chr6 14419240 14419555 -174859999 + MLT1F LTR MaLR 27 392 -150 1756 172 69 31 chr6 14419555 14419595 -174859959 - MLT1A2 LTR MaLR 0 374 337 2359 74 0 17 chr6 14419595 14419915 -174859639 + AluSq SINE Alu 1 315 0 1756 172 69 31 chr6 14419915 14420231 -174859323 - MLT1A2 LTR MaLR -37 337 1 1527 186 139 65 chr6 14420231 14420395 -174859159 + MLT1F LTR MaLR 392 542 0 1019 299 92 30 chr6 14420549 14421121 -174858433 + L1ME3 LINE L1 5175 5790 -372 2126 129 0 16 chr6 14421121 14421431 -174858123 + AluSx SINE Alu 1 305 -7 1019 299 92 30 chr6 14421431 14421533 -174858021 + L1ME3 LINE L1 5790 5884 -278 183 80 0 0 chr6 14421600 14421625 -174857929 + (TG)n Simple_repeat Simple_repeat 2 26 0 44140 29 21 1 chr6 14421768 14427800 -174851754 + L1HS LINE L1 1 6155 0 922 241 86 79 chr6 14427815 14428221 -174851333 + MLT2B1 LTR ERVL 28 436 -84 305 190 69 9 chr6 14428224 14428340 -174851214 + (TA)n Simple_repeat Simple_repeat 1 123 0 369 289 118 20 chr6 14428351 14428555 -174850999 + L1MC/D LINE L1 5256 5479 -2329 276 257 40 20 chr6 14428641 14428793 -174850761 + (TA)n Simple_repeat Simple_repeat 2 156 0 915 120 16 0 chr6 14429289 14429414 -174850140 + AluJb SINE Alu 1 127 -185 31 0 0 0 chr6 14429414 14429445 -174850109 + AT_rich Low_complexity Low_complexity 1 31 0 601 239 35 82 chr6 14429453 14429771 -174849783 - L1ME4a LINE L1 -281 5840 5538 23 33 0 0 chr6 14429940 14429970 -174849584 + AT_rich Low_complexity Low_complexity 1 30 0 2518 84 20 0 chr6 14430762 14431108 -174848446 + L1PA13 LINE L1 5811 6163 0 212 0 36 0 chr6 14431205 14431233 -174848321 + (TA)n Simple_repeat Simple_repeat 2 30 0 828 178 6 31 chr6 14431237 14431400 -174848154 - AluJo SINE Alu -37 275 117 825 153 0 0 chr6 14431436 14431560 -174847994 - AluJo SINE Alu -188 124 1 249 281 0 0 chr6 14431587 14431651 -174847903 - L2 LINE L2 -4 3309 3246 254 284 27 0 chr6 14431821 14431895 -174847659 + MIR3 SINE MIR 117 192 -16 2392 97 0 0 chr6 14432047 14432345 -174847209 + AluSq SINE Alu 1 298 -15 189 0 0 0 chr6 14432345 14432366 -174847188 + (TA)n Simple_repeat Simple_repeat 2 22 0 234 0 0 0 chr6 14432566 14432592 -174846962 + (T)n Simple_repeat Simple_repeat 1 26 0 2110 251 35 21 chr6 14433354 14433924 -174845630 - L1ME3A LINE L1 -36 6134 5557 893 222 168 32 chr6 14434814 14435129 -174844425 + L1ME3A LINE L1 5781 6138 -32 424 179 26 0 chr6 14435143 14435221 -174844333 - AluSg/x SINE Alu -27 282 203 3293 161 137 59 chr6 14435222 14435984 -174843570 - LTR12 LTR ERV1 -1 825 5 2455 182 25 24 chr6 14436000 14436593 -174842961 - pTR5 LTR ERV1 -1094 1344 751 278 139 0 12 chr6 14436593 14436640 -174842914 - AluSq SINE Alu -95 208 171 1040 118 0 0 chr6 14436640 14436776 -174842778 - AluSq SINE Alu -175 138 3 188 360 73 20 chr6 14436952 14437102 -174842452 - MIR SINE MIR -28 234 77 263 159 0 0 chr6 14437336 14437380 -174842174 - AluS SINE Alu -28 274 231 755 216 45 54 chr6 14437380 14437602 -174841952 + pTR5 LTR ERV1 745 964 -1474 2383 191 91 117 chr6 14437793 14438638 -174840916 + LTR12 LTR ERV1 3 825 -1 885 223 48 0 chr6 14438667 14438855 -174840699 - AluSx SINE Alu -107 205 9 1513 209 71 9 chr6 14439701 14440040 -174839514 - MLT1A2 LTR MaLR 0 374 15 254 277 15 0 chr6 14440040 14440105 -174839449 + MIR SINE MIR 171 236 -26 438 312 0 7 chr6 14440269 14440407 -174839147 - MIR SINE MIR -111 151 15 665 188 199 0 chr6 14440579 14440760 -174838794 - MER20 DNA MER1_type 0 219 3 218 370 51 61 chr6 14441637 14441932 -174837622 - L2 LINE L2 -2 3270 2979 22 35 0 0 chr6 14442638 14442667 -174836887 + AT_rich Low_complexity Low_complexity 1 29 0 2276 113 10 0 chr6 14442864 14443174 -174836380 - AluSp SINE Alu 0 313 1 1841 136 24 3 chr6 14443219 14443506 -174836048 + AluJo SINE Alu 5 297 -15 2380 85 0 0 chr6 14443509 14443803 -174835751 + AluY SINE Alu 1 294 -17 1608 239 42 52 chr6 14443893 14444508 -174835046 + L1MC5 LINE L1 6646 7252 -728 1186 246 58 81 chr6 14444642 14444860 -174834694 + L1MC5 LINE L1 7290 7511 -450 1859 168 58 34 chr6 14444860 14445241 -174834313 - MLT1B LTR MaLR 0 390 1 1186 246 58 81 chr6 14445241 14445337 -174834217 + L1MC5 LINE L1 7511 7608 -353 1610 197 3 16 chr6 14445337 14445642 -174833912 - AluJo SINE Alu -11 301 1 1186 246 58 81 chr6 14445642 14445896 -174833658 + L1MC5 LINE L1 7608 7846 -115 1836 127 0 72 chr6 14445896 14446042 -174833512 + AluJb SINE Alu 1 156 -161 2943 12 0 3 chr6 14446042 14446361 -174833193 + AluYb8 SINE Alu 1 318 0 1836 127 0 72 chr6 14446361 14446553 -174833001 + AluJb SINE Alu 156 317 0 347 195 0 35 chr6 14447471 14447558 -174831996 + L1MC5 LINE L1 7842 7925 -36 420 285 66 48 chr6 14447594 14447863 -174831691 + L1MC5 LINE L1 7514 7793 -168 360 0 0 0 chr6 14447863 14447903 -174831651 + (CA)n Simple_repeat Simple_repeat 2 41 0 420 285 66 48 chr6 14447903 14448012 -174831542 + L1MC5 LINE L1 7793 7899 -62 2304 100 0 28 chr6 14448415 14448735 -174830819 + AluSq SINE Alu 1 311 -2 274 0 73 0 chr6 14448735 14448776 -174830778 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 32 26 0 0 chr6 14448889 14448928 -174830626 + AT_rich Low_complexity Low_complexity 1 39 0 1766 208 46 11 chr6 14450213 14450579 -174828975 + MER57A LTR ERV1 11 389 -14 1322 94 0 0 chr6 14450579 14450749 -174828805 - AluSg/x SINE Alu -10 302 133 690 141 0 0 chr6 14450749 14450848 -174828706 + AluSq/x SINE Alu 9 107 -205 1941 129 57 0 chr6 14451258 14451537 -174828017 + AluSx SINE Alu 1 295 -17 290 301 44 15 chr6 14451568 14451704 -174827850 - MIR SINE MIR -72 190 51 688 230 16 27 chr6 14451748 14451935 -174827619 - MIR SINE MIR 0 262 78 642 207 68 81 chr6 14452191 14452637 -174826917 - LTR33 LTR ERVL -1 520 32 2211 91 35 0 chr6 14452765 14453050 -174826504 + AluSp SINE Alu 1 295 -18 1115 200 5 9 chr6 14453195 14453433 -174826121 + L1MA9 LINE L1 5555 5791 -500 254 247 0 22 chr6 14453451 14453540 -174826014 - L1MC4 LINE L1 -1339 6703 6617 * 274 253 0 40 chr6 14453479 14453578 -174825976 + L1MC4 LINE L1 6614 6708 -1334 * 2302 168 71 14 chr6 14453553 14454047 -174825507 + L1MA9 LINE L1 5783 6304 -8 253 228 79 71 chr6 14455096 14455223 -174824331 + L2 LINE L2 2379 2506 -808 2345 99 0 0 chr6 14455256 14455550 -174824004 + AluSx SINE Alu 1 294 -18 204 294 28 63 chr6 14455550 14455602 -174823952 - L2 LINE L2 -20 3293 3241 2339 97 0 3 chr6 14455602 14455900 -174823654 + AluSx SINE Alu 1 297 -15 204 294 28 63 chr6 14455900 14455990 -174823564 - L2 LINE L2 -72 3241 3156 599 303 139 9 chr6 14456160 14456490 -174823064 - MLT1L LTR MaLR -234 381 9 180 339 22 84 chr6 14456553 14456780 -174822774 + L2 LINE L2 2575 2787 -527 317 328 35 35 chr6 14456793 14456941 -174822613 - MIR SINE MIR -17 245 95 1997 161 92 65 chr6 14456941 14457008 -174822546 - MLT1D LTR MaLR 0 505 441 2111 124 3 0 chr6 14457008 14457321 -174822233 - AluSx SINE Alu 0 314 1 1997 161 92 65 chr6 14457321 14457743 -174821811 - MLT1D LTR MaLR -64 441 2 317 328 35 35 chr6 14457743 14457792 -174821762 - MIR SINE MIR -166 96 48 277 208 32 104 chr6 14457860 14457985 -174821569 + L2 LINE L2 2944 3059 -213 468 86 0 0 chr6 14458131 14458201 -174821353 + (TTGG)n Simple_repeat Simple_repeat 1 70 0 233 214 0 0 chr6 14458643 14458685 -174820869 + (CA)n Simple_repeat Simple_repeat 2 43 0 288 303 37 9 chr6 14458685 14458794 -174820760 - MIR SINE MIR -138 124 13 801 204 76 19 chr6 14458871 14459082 -174820472 - L1PA16 LINE L1 -4 6162 5940 2058 104 43 0 chr6 14459365 14459644 -174819910 + AluSq SINE Alu 1 291 -22 324 159 32 159 chr6 14460811 14460937 -174818617 + MER5B DNA MER1_type 50 159 -19 187 256 0 0 chr6 14461047 14461086 -174818468 - MER5B DNA MER1_type -76 102 64 1782 150 0 4 chr6 14461097 14461364 -174818190 - AluJb SINE Alu 0 312 47 252 205 64 39 chr6 14461950 14462028 -174817526 - MIR SINE MIR -93 115 36 417 237 122 35 chr6 14462075 14462324 -174817230 - MER46C DNA MER2_type -1 337 1 546 304 54 22 chr6 14462347 14462531 -174817023 - MIR SINE MIR -1 261 72 197 235 39 0 chr6 14463884 14463935 -174815619 + MIR SINE MIR 60 112 -96 358 351 18 0 chr6 14463939 14464050 -174815504 - L2 LINE L2 0 3272 3160 1049 176 5 5 chr6 14464059 14464247 -174815307 - MER5A DNA MER1_type -1 188 1 4224 191 41 22 chr6 14464505 14465428 -174814126 + L1MB8 LINE L1 4756 5703 -475 2308 96 3 0 chr6 14465428 14465720 -174813834 + AluSq SINE Alu 1 293 -20 4224 191 41 22 chr6 14465720 14466206 -174813348 + L1MB8 LINE L1 5703 6178 0 197 0 0 0 chr6 14466469 14466493 -174813061 + MER5A DNA MER1_type 1 24 -165 1320 176 52 0 chr6 14466494 14466727 -174812827 + L1MA9 LINE L1 5545 5789 -502 4492 160 36 31 chr6 14466737 14468095 -174811459 + pTR5 LTR ERV1 741 2430 -8 1820 188 51 44 chr6 14468105 14468352 -174811202 + L1MA9 LINE L1 5798 6051 -261 1853 174 0 0 chr6 14468352 14468645 -174810909 + AluSx SINE Alu 1 293 -19 1820 188 51 44 chr6 14468645 14468871 -174810683 + L1MA9 LINE L1 6051 6274 -38 28 29 0 0 chr6 14468871 14468906 -174810648 + AT_rich Low_complexity Low_complexity 1 35 0 901 164 42 0 chr6 14468911 14469076 -174810478 + MER5A DNA MER1_type 17 188 -1 444 333 35 22 chr6 14469181 14469409 -174810145 - L2 LINE L2 -575 2739 2509 1701 154 70 9 chr6 14469444 14469774 -174809780 - L1MB4 LINE L1 -1 6179 5830 2525 132 8 5 chr6 14469775 14470433 -174809121 + MER50 LTR ERV1 1 711 -23 295 148 0 19 chr6 14470439 14470493 -174809061 - L1MB4 LINE L1 -346 5828 5776 225 132 75 0 chr6 14470493 14470546 -174809008 + (TA)n Simple_repeat Simple_repeat 2 58 0 2570 178 39 29 chr6 14470550 14471187 -174808367 - L1MB4 LINE L1 -376 5804 5173 218 317 12 0 chr6 14471223 14471305 -174808249 - L2 LINE L2 -4 3309 3227 324 312 0 0 chr6 14471580 14471657 -174807897 - MER69 DNA AcHobo -2449 77 1 3545 103 9 59 chr6 14471887 14472531 -174807023 + MER4B LTR ERV1 1 779 0 1122 175 63 114 chr6 14472800 14472917 -174806637 + MER69 DNA AcHobo 2150 2271 -255 1067 93 0 182 chr6 14472917 14473153 -174806401 + 7SK RNA RNA 1 193 0 1122 175 63 114 chr6 14473153 14473303 -174806251 + MER69 DNA AcHobo 2271 2393 -133 2576 68 0 0 chr6 14473303 14473612 -174805942 - AluY SINE Alu -2 309 1 1122 175 63 114 chr6 14473612 14473738 -174805816 + MER69 DNA AcHobo 2393 2524 -2 648 233 0 0 chr6 14474082 14474211 -174805343 + FLAM_A SINE Alu 10 138 -4 2158 108 69 83 chr6 14474211 14474644 -174804910 + MSTA LTR MaLR 2 428 0 2259 107 0 10 chr6 14475250 14475558 -174803996 - AluSg SINE Alu -5 305 1 440 253 11 81 chr6 14475811 14475997 -174803557 + MER5B DNA MER1_type 3 175 -3 1430 243 60 72 chr6 14476025 14476724 -174802830 - HAL1 LINE L1 -748 1759 1069 1537 264 85 51 chr6 14476727 14477632 -174801922 + L1MC4a LINE L1 4582 5454 -692 782 55 0 18 chr6 14477632 14477741 -174801813 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1496 104 5 14 chr6 14477743 14477955 -174801599 - AluSg/x SINE Alu -23 287 78 1537 264 85 51 chr6 14477955 14478371 -174801183 + L1MC4a LINE L1 5454 5362 -784 1697 168 30 40 chr6 14478371 14478674 -174800880 + AluSx SINE Alu 1 300 -12 1537 264 85 51 chr6 14478674 14478719 -174800835 + L1MC4a LINE L1 5361 5403 -743 362 304 182 12 chr6 14478840 14479093 -174800461 - MLT1J LTR MaLR -1 510 215 401 268 64 75 chr6 14479199 14479479 -174800075 - HAL1 LINE L1 -1613 894 618 249 189 0 0 chr6 14479624 14479661 -174799893 + MER20 DNA MER1_type 1 37 -182 485 146 212 66 chr6 14479664 14479815 -174799739 - MER53 DNA DNA -1 188 16 * 1026 204 32 0 chr6 14479810 14479996 -174799558 + MER20 DNA MER1_type 25 216 -3 2542 53 0 13 chr6 14481538 14481838 -174797716 + AluSc SINE Alu 1 296 -13 1393 148 27 46 chr6 14481923 14482186 -174797368 - AluJo SINE Alu -25 287 30 206 286 188 9 chr6 14482192 14482304 -174797250 - MIR SINE MIR -71 191 60 467 230 50 93 chr6 14482306 14482584 -174796970 - L1ME4a LINE L1 -229 5892 5627 658 272 17 35 chr6 14483240 14483413 -174796141 - L3b LINE CR1 -157 1426 1257 181 273 0 0 chr6 14483420 14483464 -174796090 + L2 LINE L2 3265 3308 -5 183 317 99 49 chr6 14483468 14483540 -174796014 - L3b LINE CR1 -324 1259 1192 1999 120 57 0 chr6 14483540 14483823 -174795731 - AluSx SINE Alu -13 299 1 183 317 99 49 chr6 14483823 14483892 -174795662 - L3b LINE CR1 -391 1192 1111 186 316 35 0 chr6 14485079 14485136 -174794418 - MIR SINE MIR -24 238 180 2363 181 45 11 chr6 14485149 14485612 -174793942 + LTR45B LTR ERV1 3 481 -8 479 296 0 52 chr6 14485616 14485751 -174793803 - MIR SINE MIR -104 158 31 754 64 0 37 chr6 14535754 14535863 -174743691 - AluY SINE Alu -163 148 44 2024 146 7 3 chr6 14536042 14536351 -174743203 + AluSg SINE Alu 1 310 0 361 338 6 6 chr6 14536958 14537115 -174742439 + L1MEd LINE L1 596 752 -5367 2030 222 33 22 chr6 14537144 14537266 -174742288 + L1ME2 LINE L1 4569 4688 -1458 2429 88 3 0 chr6 14537266 14537572 -174741982 - AluSp SINE Alu -6 307 1 2030 222 33 22 chr6 14537572 14538049 -174741505 + L1ME2 LINE L1 4688 5175 -971 2464 215 44 72 chr6 14538076 14538686 -174740868 + L1ME2 LINE L1 5254 5834 -330 2197 113 0 0 chr6 14538686 14538994 -174740560 - AluSx SINE Alu 0 308 1 2464 215 44 72 chr6 14538994 14539274 -174740280 + L1ME2 LINE L1 5834 6120 -44 27 0 0 0 chr6 14539354 14539381 -174740173 + AT_rich Low_complexity Low_complexity 1 27 0 368 288 75 7 chr6 14539435 14539581 -174739973 + MIR3 SINE MIR 3 158 -50 2042 105 51 3 chr6 14539725 14540020 -174739534 + AluSx SINE Alu 1 309 -3 2351 79 0 3 chr6 14540286 14540589 -174738965 - AluSx SINE Alu -10 302 1 210 206 0 0 chr6 14540602 14540665 -174738889 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 486 290 37 25 chr6 14540695 14540857 -174738697 - MIR3 SINE MIR -28 180 17 912 182 13 0 chr6 14540956 14541115 -174738439 - AluJb SINE Alu -18 294 134 2053 118 38 0 chr6 14541115 14541402 -174738152 - AluSx SINE Alu -14 298 1 3423 169 107 39 chr6 14542172 14543474 -174736080 - pTR5 LTR ERV1 0 2438 743 1758 104 0 90 chr6 14543474 14543763 -174735791 + AluSq SINE Alu 31 293 -20 270 256 64 64 chr6 14543892 14544017 -174735537 + MIR SINE MIR 6 130 -132 1824 140 7 7 chr6 14544142 14544413 -174735141 + AluSx SINE Alu 13 283 -29 2496 166 31 9 chr6 14544621 14545074 -174734480 + MLT1C LTR MaLR 1 463 -4 1154 150 6 0 chr6 14545155 14545328 -174734226 - AluSg/x SINE Alu -8 302 129 27 0 0 0 chr6 14545361 14545388 -174734166 + AT_rich Low_complexity Low_complexity 1 27 0 1033 69 0 0 chr6 14545388 14545519 -174734035 - AluSc SINE Alu -178 131 1 1645 151 12 47 chr6 14545791 14546110 -174733444 - AluJo SINE Alu 0 312 5 1515 110 5 41 chr6 14546120 14546338 -174733216 - AluSq SINE Alu -10 303 94 3408 205 36 10 chr6 14546613 14547165 -174732389 + L1MC3 LINE L1 6897 7480 -305 2224 123 0 0 chr6 14547165 14547465 -174732089 + AluSq SINE Alu 1 300 -13 3408 205 36 10 chr6 14547465 14547779 -174731775 + L1MC3 LINE L1 7480 7785 0 24 0 0 0 chr6 14548061 14548085 -174731469 + AT_rich Low_complexity Low_complexity 1 24 0 2216 113 13 3 chr6 14548241 14548543 -174731011 + AluSx SINE Alu 1 305 -7 3085 241 108 91 chr6 14549737 14550989 -174728565 + HAL1 LINE L1 376 1605 -902 270 150 0 0 chr6 14550989 14551029 -174728525 - 5S rRNA rRNA -81 40 1 3085 241 108 91 chr6 14551029 14551565 -174727989 + HAL1 LINE L1 1605 2246 -261 288 0 0 0 chr6 14551565 14551597 -174727957 + (TG)n Simple_repeat Simple_repeat 2 33 0 3085 241 108 91 chr6 14551597 14551864 -174727690 + HAL1 LINE L1 2246 2507 0 181 303 40 10 chr6 14551960 14552059 -174727495 - L2 LINE L2 -2520 794 693 206 259 52 0 chr6 14552722 14552780 -174726774 + MIR3 SINE MIR 137 197 -11 254 217 36 36 chr6 14553280 14553363 -174726191 + MER103 DNA DNA 3 85 -81 2347 141 25 30 chr6 14553718 14554152 -174725402 - MSTB1 LTR MaLR 0 432 1 2242 117 0 0 chr6 14554453 14554760 -174724794 + AluSc SINE Alu 1 307 -2 438 291 114 76 chr6 14556258 14556742 -174722812 + L1MC4 LINE L1 7192 7693 -349 263 209 67 57 chr6 14556901 14557006 -174722548 + L1MC4 LINE L1 7920 8025 -17 185 311 63 49 chr6 14557067 14557275 -174722279 + L2 LINE L2 1979 2194 -1120 4360 99 48 24 chr6 14557275 14558021 -174721533 + L1MA5A LINE L1 5530 6293 -4 185 311 63 49 chr6 14558021 14558098 -174721456 + L2 LINE L2 2194 2268 -1046 397 0 38 0 chr6 14559539 14559592 -174719962 + (TAAAA)n Simple_repeat Simple_repeat 1 55 0 407 141 43 11 chr6 14565834 14565926 -174713628 + L1ME3A LINE L1 5860 5954 -216 2028 116 41 41 chr6 14566003 14566365 -174713189 - THE1B LTR MaLR -2 362 1 10995 81 23 62 chr6 14566365 14567472 -174712082 - THE1B-int LTR MaLR 0 1580 556 2239 92 7 23 chr6 14567472 14567775 -174711779 - AluY SINE Alu -13 298 1 10995 81 23 62 chr6 14567775 14568311 -174711243 - THE1B-int LTR MaLR -1024 556 1 1900 139 50 36 chr6 14568311 14568670 -174710884 - THE1B LTR MaLR 0 364 1 227 87 65 43 chr6 14568846 14568892 -174710662 + GA-rich Low_complexity Low_complexity 3 49 0 2399 152 73 9 chr6 14569082 14569767 -174709787 + L1MA4A LINE L1 5532 6279 -12 367 261 94 112 chr6 14570211 14570659 -174708895 + MLT1K LTR MaLR 2 438 -150 261 0 0 0 chr6 14570659 14570688 -174708866 + (CAA)n Simple_repeat Simple_repeat 2 30 0 367 261 94 112 chr6 14570688 14570837 -174708717 + MLT1K LTR MaLR 438 588 0 22 0 0 0 chr6 14570907 14570929 -174708625 + AT_rich Low_complexity Low_complexity 1 22 0 235 306 0 0 chr6 14570971 14571033 -174708521 + (CATA)n Simple_repeat Simple_repeat 3 64 0 1030 298 143 48 chr6 14571152 14571934 -174707620 - L1M4 LINE L1 -2408 3738 3032 592 146 89 57 chr6 14571934 14572057 -174707497 + FLAM_C SINE Alu 1 127 -6 1030 298 143 48 chr6 14572057 14572655 -174706899 - L1M4 LINE L1 -3114 3032 2226 1742 144 0 8 chr6 14572666 14572929 -174706625 + AluJb SINE Alu 12 272 -40 288 77 0 0 chr6 14572940 14572979 -174706575 + (CA)n Simple_repeat Simple_repeat 2 40 0 1922 156 0 0 chr6 14573031 14573313 -174706241 - AluSx SINE Alu -30 282 1 2169 178 52 11 chr6 14573671 14574114 -174705440 + LOR1b LTR ERV1 1 461 0 382 270 104 56 chr6 14574140 14574514 -174705040 - HAL1 LINE L1 -975 1532 1141 21 36 0 0 chr6 14575696 14575724 -174703830 + AT_rich Low_complexity Low_complexity 1 28 0 1030 232 109 71 chr6 14575890 14576411 -174703143 + MLT1H LTR MaLR 1 541 -8 207 255 91 14 chr6 14578339 14578435 -174701119 + MIR SINE MIR 37 190 -72 342 67 0 0 chr6 14579092 14579137 -174700417 + (CA)n Simple_repeat Simple_repeat 1 45 0 839 173 0 0 chr6 14579301 14579434 -174700120 - FLAM_C SINE Alu 0 133 1 331 323 42 0 chr6 14579497 14579593 -174699961 - L2 LINE L2 0 3272 3173 1651 335 111 21 chr6 14579607 14580552 -174699002 + L2 LINE L2 1912 2941 -373 1589 164 40 20 chr6 14580596 14580971 -174698583 - MSTB1 LTR MaLR 0 432 1 248 361 114 11 chr6 14580974 14581237 -174698317 + L2 LINE L2 3020 3309 -4 1971 86 0 0 chr6 14581387 14581650 -174697904 - AluSc SINE Alu 0 301 39 265 200 0 0 chr6 14582707 14582752 -174696802 - MER41B LTR ERV1 -590 45 1 2184 131 0 3 chr6 14583169 14583481 -174696073 + AluSx SINE Alu 1 311 -1 1294 120 25 10 chr6 14583569 14583806 -174695748 + L1MA5 LINE L1 5717 5956 -335 819 142 0 17 chr6 14583905 14584025 -174695529 - FLAM_C SINE Alu -25 118 1 399 218 35 105 chr6 14584244 14584473 -174695081 + L1MC5 LINE L1 6926 7138 -823 585 253 160 10 chr6 14584522 14584716 -174694838 + MER58A DNA MER1_type 1 223 -1 1654 222 52 46 chr6 14584913 14585115 -174694439 + L1MC5 LINE L1 7292 7491 -470 1083 163 17 54 chr6 14585115 14585354 -174694200 + MER30 DNA MER1_type 1 230 0 1654 222 52 46 chr6 14585354 14585781 -174693773 + L1MC5 LINE L1 7491 7925 -36 249 308 234 9 chr6 14585876 14585983 -174693571 - L2 LINE L2 0 3272 3142 2058 197 13 111 chr6 14586526 14587140 -174692414 + MER41C LTR ERV1 1 554 0 5093 165 13 32 chr6 14587147 14588196 -174691358 + MER41C-int LTR ERV1 7 1126 -4820 3421 151 26 16 chr6 14588188 14588697 -174690857 + MER41C-int LTR ERV1 2349 2851 -3095 * 2146 136 0 0 chr6 14588697 14588991 -174690563 + AluSx SINE Alu 1 294 -18 2072 139 10 0 chr6 14589000 14589295 -174690259 + AluSx SINE Alu 4 301 -11 3421 151 26 16 chr6 14589295 14589994 -174689560 + MER41C-int LTR ERV1 2858 3645 -2301 12144 123 36 47 chr6 14590708 14593071 -174686483 + MER41C-int LTR ERV1 3609 5945 -1 2524 170 27 83 chr6 14593072 14593329 -174686225 + MER41C LTR ERV1 1 271 -283 2021 138 7 0 chr6 14593329 14593653 -174685901 + AluSx SINE Alu 1 326 0 2524 170 27 83 chr6 14593653 14593981 -174685573 + MER41C LTR ERV1 271 554 0 406 297 41 28 chr6 14594534 14594679 -174684875 + MIR3 SINE MIR 61 207 -1 531 331 39 11 chr6 14594943 14595121 -174684433 + MIR SINE MIR 32 214 -48 550 92 0 0 chr6 14595252 14595340 -174684214 + MER31B LTR ERV1 1 75 -391 * 1404 203 90 35 chr6 14595336 14595808 -174683746 + MER67B LTR ERV1 5 406 -255 292 225 0 34 chr6 14595808 14595897 -174683657 + MER67C LTR ERV1 318 403 -307 259 229 36 0 chr6 14595990 14596076 -174683478 + MER31B LTR ERV1 385 527 -16 328 399 69 17 chr6 14596090 14596263 -174683291 - L2 LINE L2 -2 3270 3089 844 181 0 0 chr6 14596373 14596511 -174683043 + FLAM_C SINE Alu 1 138 -5 22 35 0 0 chr6 14596584 14596613 -174682941 + AT_rich Low_complexity Low_complexity 1 29 0 400 191 11 11 chr6 14596803 14596897 -174682657 + L1MB8 LINE L1 6075 6168 -10 724 281 107 35 chr6 14596933 14597152 -174682402 + L1MEc LINE L1 1103 1305 -5091 1816 186 0 0 chr6 14597152 14597442 -174682112 + AluSx SINE Alu 1 290 -22 724 281 107 35 chr6 14597442 14597885 -174681669 + L1MEc LINE L1 1305 1813 -4583 1517 272 91 19 chr6 14598047 14599337 -174680217 + L1MEc LINE L1 2032 3376 -2839 3414 245 67 38 chr6 14599353 14599953 -174679601 + L1MEc LINE L1 3771 4352 -1887 2427 87 0 0 chr6 14599953 14600262 -174679292 + AluY SINE Alu 3 311 0 3414 245 67 38 chr6 14600262 14600691 -174678863 + L1MEc LINE L1 4352 4767 -1472 2116 105 0 0 chr6 14600691 14600968 -174678586 - AluSq SINE Alu -11 302 26 3414 245 67 38 chr6 14600968 14601477 -174678077 + L1MEc LINE L1 4767 5260 -979 2072 74 32 58 chr6 14601477 14601789 -174677765 + AluY SINE Alu 1 304 -7 3414 245 67 38 chr6 14601789 14602630 -174676924 + L1MEc LINE L1 5260 6233 -6 270 309 64 77 chr6 14602708 14603222 -174676332 + L2 LINE L2 2665 3225 -47 2393 118 83 8 chr6 14603540 14603938 -174675616 + MSTA LTR MaLR 1 428 0 272 282 0 0 chr6 14604480 14604558 -174674996 - L2 LINE L2 -78 3235 3158 682 277 84 64 chr6 14604582 14604966 -174674588 + L2 LINE L2 2594 3033 -280 224 391 0 0 chr6 14605063 14605150 -174674404 - L2 LINE L2 -2001 1313 1227 881 211 5 0 chr6 14605562 14605745 -174673809 + Charlie5 DNA MER1_type 1 187 -2437 2204 128 0 6 chr6 14605745 14606058 -174673496 - AluSx SINE Alu -1 311 1 731 198 5 5 chr6 14606067 14606253 -174673301 + Charlie5 DNA MER1_type 2348 2536 -88 * 1417 156 93 42 chr6 14606253 14606542 -174673012 - AluJo SINE Alu -8 304 1 731 198 5 5 chr6 14606542 14606557 -174672997 + Charlie5 DNA MER1_type 2535 2549 -75 743 243 22 33 chr6 14607566 14607648 -174671906 - MIR SINE MIR -49 213 132 2236 164 0 3 chr6 14607648 14608014 -174671540 - MLT1A1 LTR MaLR 0 365 1 743 243 22 33 chr6 14608014 14608112 -174671442 - MIR SINE MIR -130 132 35 288 344 0 0 chr6 14608978 14609071 -174670483 + MIR SINE MIR 168 260 -2 1208 144 5 5 chr6 14609432 14609633 -174669921 + MER2 DNA MER2_type 2 202 -143 648 177 31 8 chr6 14610099 14610229 -174669325 + MIR SINE MIR 120 252 -10 192 40 0 0 chr6 14613001 14613026 -174666528 + (CA)n Simple_repeat Simple_repeat 2 26 0 24 32 0 0 chr6 14614602 14614633 -174664921 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 14614720 14614741 -174664813 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr6 14614846 14614888 -174664666 + GC_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr6 14614900 14614949 -174664605 + GC_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr6 14615065 14615086 -174664468 + GC_rich Low_complexity Low_complexity 1 21 0 201 174 0 22 chr6 14615301 14615347 -174664207 + (CCA)n Simple_repeat Simple_repeat 3 47 0 189 107 0 0 chr6 14615501 14615529 -174664025 + (TCC)n Simple_repeat Simple_repeat 2 29 0 686 238 50 5 chr6 14616341 14616597 -174662957 + L1P5 LINE L1 5575 5842 -309 946 163 153 28 chr6 14617367 14617655 -174661899 + MER33 DNA MER1_type 1 324 0 696 273 43 0 chr6 14617865 14618026 -174661528 + MIR SINE MIR 23 190 -72 2484 74 0 0 chr6 14618099 14618395 -174661159 - AluY SINE Alu -15 296 1 23 54 0 0 chr6 14618641 14618678 -174660876 + AT_rich Low_complexity Low_complexity 1 37 0 227 200 0 0 chr6 14618885 14618920 -174660634 - MIR SINE MIR -110 98 64 184 167 0 0 chr6 14620676 14620706 -174658848 + MIR SINE MIR 123 152 -56 570 119 0 28 chr6 14621220 14621329 -174658225 - MER53 DNA DNA -83 106 1 488 335 36 33 chr6 14621723 14621998 -174657556 - L2 LINE L2 -599 2715 2440 206 132 0 26 chr6 14622168 14622181 -174657373 + (GA)n Simple_repeat Simple_repeat 2 14 -24 2032 106 0 0 chr6 14622181 14622445 -174657109 + AluSq SINE Alu 41 304 -9 206 132 0 26 chr6 14622445 14622469 -174657085 + (GA)n Simple_repeat Simple_repeat 14 38 0 823 293 60 48 chr6 14622511 14622924 -174656630 + L2 LINE L2 2887 3304 -9 197 329 71 41 chr6 14623522 14623692 -174655862 - L2 LINE L2 -294 2978 2804 200 335 107 39 chr6 14624368 14624601 -174654953 + L2 LINE L2 2510 2758 -556 231 357 0 18 chr6 14624721 14624833 -174654721 + L2 LINE L2 2946 3055 -217 766 271 124 38 chr6 14625724 14626177 -174653377 - MLT1L LTR MaLR -2 613 122 270 0 0 0 chr6 14626193 14626223 -174653331 + (A)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chr6 14626417 14626439 -174653115 + (CAT)n Simple_repeat Simple_repeat 2 23 0 2292 103 3 0 chr6 14627280 14627582 -174651972 + AluSx SINE Alu 1 303 -9 211 209 66 77 chr6 14628188 14628279 -174651275 + MIR3 SINE MIR 118 207 -1 * 760 260 44 52 chr6 14628262 14628512 -174651042 + MIR SINE MIR 2 249 -13 4014 152 54 16 chr6 14628535 14629348 -174650206 - L1MB8 LINE L1 0 6178 5337 2133 81 17 3 chr6 14629478 14629773 -174649781 - L1PA10 LINE L1 -2 6166 5868 363 346 86 0 chr6 14630158 14630320 -174649234 + MIR SINE MIR 76 251 -11 866 115 0 7 chr6 14631899 14632047 -174647507 + (GGAA)n Simple_repeat Simple_repeat 4 150 0 265 296 49 0 chr6 14632314 14632395 -174647159 + L2 LINE L2 3225 3309 -4 411 266 117 56 chr6 14633008 14633358 -174646196 + L1MC4a LINE L1 5669 6038 -83 2257 104 3 0 chr6 14633361 14633659 -174645895 - AluSx SINE Alu -13 299 1 40 49 0 0 chr6 14633730 14633791 -174645763 + AT_rich Low_complexity Low_complexity 1 61 0 309 333 217 19 chr6 14633816 14634125 -174645429 + L1MC4a LINE L1 5544 5913 -1895 375 308 88 39 chr6 14634174 14634356 -174645198 + L1MC4a LINE L1 5765 5955 -1853 188 299 39 52 chr6 14635131 14635164 -174644390 - MIR3 SINE MIR -127 81 49 1094 162 133 41 chr6 14635164 14635437 -174644117 + AluJb SINE Alu 1 296 -6 188 299 39 52 chr6 14635437 14635478 -174644076 - MIR3 SINE MIR -159 49 6 356 287 16 39 chr6 14635491 14635620 -174643934 - MIR3 SINE MIR -68 140 15 369 217 22 22 chr6 14636007 14636099 -174643455 - MLT1I LTR MaLR -9 400 309 358 169 14 14 chr6 14636220 14636291 -174643263 - MLT1J2 LTR MaLR -306 144 74 240 35 0 0 chr6 14636549 14636578 -174642976 + (CA)n Simple_repeat Simple_repeat 2 30 0 1856 161 13 3 chr6 14637122 14637427 -174642127 - AluJb SINE Alu 0 312 5 2542 54 0 3 chr6 14637442 14637738 -174641816 - AluY SINE Alu -16 295 1 231 114 0 0 chr6 14637817 14637852 -174641702 + (TTC)n Simple_repeat Simple_repeat 1 35 0 2722 42 0 0 chr6 14638652 14638962 -174640592 + AluY SINE Alu 1 310 -1 663 258 38 113 chr6 14638980 14639271 -174640283 + MLT1L LTR MaLR 236 608 -7 2084 115 26 26 chr6 14639393 14639705 -174639849 + AluSx SINE Alu 1 312 0 877 148 7 14 chr6 14639804 14639946 -174639608 - FLAM_C SINE Alu -2 141 1 2325 101 0 0 chr6 14640274 14640580 -174638974 + AluSx SINE Alu 1 306 -6 697 283 52 35 chr6 14641201 14641601 -174637953 - L1ME4a LINE L1 -9 6112 5706 273 154 103 39 chr6 14642238 14642316 -174637238 + MLT1L LTR MaLR 529 611 -4 715 293 19 0 chr6 14642513 14642718 -174636836 + MIR SINE MIR 52 260 -2 268 319 38 11 chr6 14642732 14642917 -174636637 + L3 LINE CR1 1189 1378 -199 1541 98 13 17 chr6 14642932 14642961 -174636593 + L1MA5A LINE L1 6058 6086 -211 2592 88 59 0 chr6 14642961 14643315 -174636239 + THE1C LTR MaLR 1 375 0 1541 98 13 17 chr6 14643315 14643521 -174636033 + L1MA5A LINE L1 6086 6292 -5 24 53 0 0 chr6 14643521 14643559 -174635995 + AT_rich Low_complexity Low_complexity 1 38 0 1523 161 57 143 chr6 14643917 14644315 -174635239 + MLT1C LTR MaLR 48 402 -65 1868 147 25 0 chr6 14644315 14644594 -174634960 - AluSx SINE Alu -26 286 1 1523 161 57 143 chr6 14644594 14644655 -174634899 + MLT1C LTR MaLR 402 467 0 1687 157 66 11 chr6 14644678 14644952 -174634602 - AluJb SINE Alu -23 289 1 222 255 21 43 chr6 14645083 14645177 -174634377 + L2 LINE L2 2219 2310 -1004 566 286 80 10 chr6 14645385 14645696 -174633858 + L1ME3A LINE L1 4395 4727 -1419 1624 172 29 16 chr6 14645845 14646153 -174633401 - MLT1B LTR MaLR 0 390 79 493 258 52 0 chr6 14646273 14646428 -174633126 + L1ME3A LINE L1 5727 5889 -281 2147 128 0 3 chr6 14646502 14646807 -174632747 + AluSx SINE Alu 1 304 -8 264 185 46 40 chr6 14646849 14647022 -174632532 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 * 311 241 49 0 chr6 14646911 14647073 -174632481 + (TA)n Simple_repeat Simple_repeat 2 171 0 38 0 0 0 chr6 14647321 14647359 -174632195 + AT_rich Low_complexity Low_complexity 1 38 0 1437 216 30 24 chr6 14647818 14648156 -174631398 + MER58B DNA MER1_type 1 340 -1 438 246 80 85 chr6 14649345 14649569 -174629985 - LTR16A LTR ERVL -12 438 216 915 96 86 91 chr6 14649569 14649756 -174629798 + MLT1B LTR MaLR 1 186 -204 593 133 0 11 chr6 14649781 14649871 -174629683 - THE1B LTR MaLR 0 364 276 2278 93 14 0 chr6 14649871 14650161 -174629393 + AluSx SINE Alu 1 294 -18 255 297 0 0 chr6 14650167 14650258 -174629296 - L1MC4 LINE L1 -1339 6703 6613 1593 121 71 36 chr6 14650275 14650556 -174628998 - THE1B LTR MaLR -73 291 1 1103 182 10 0 chr6 14650563 14650761 -174628793 + MLT1B LTR MaLR 191 390 0 273 265 249 20 chr6 14651019 14651222 -174628332 - L2 LINE L2 -181 3091 2936 2109 119 3 3 chr6 14651222 14651517 -174628037 + AluSx SINE Alu 1 295 -17 273 265 249 20 chr6 14651517 14651648 -174627906 - L2 LINE L2 -336 2936 2684 233 233 63 74 chr6 14652110 14652221 -174627333 + MIR SINE MIR 19 134 -93 186 43 0 0 chr6 14652222 14652245 -174627309 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1615 142 104 21 chr6 14652249 14652537 -174627017 - AluJo SINE Alu 0 312 1 257 289 67 0 chr6 14652538 14652642 -174626912 + MIR SINE MIR 97 207 -55 590 269 157 49 chr6 14652659 14652876 -174626678 - L2 LINE L2 0 3313 3121 1932 111 56 0 chr6 14652876 14653146 -174626408 + AluSx SINE Alu 19 303 -9 590 269 157 49 chr6 14653146 14653278 -174626276 - L2 LINE L2 -192 3121 2926 225 255 142 28 chr6 14653453 14653559 -174625995 - MER5B DNA MER1_type -60 118 1 1497 142 3 133 chr6 14653601 14653931 -174625623 + AluJo SINE Alu 1 287 -15 2050 124 28 0 chr6 14654419 14654702 -174624852 + AluSx SINE Alu 1 291 -21 209 238 12 0 chr6 14655342 14655422 -174624132 + (CA)n Simple_repeat Simple_repeat 1 81 0 286 213 8 148 chr6 14655979 14656101 -174623453 - L2 LINE L2 -92 3221 3117 204 149 0 21 chr6 14656148 14656195 -174623359 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 2431 104 0 6 chr6 14656197 14656525 -174623029 - LTR17 LTR ERV1 -454 326 1 2373 52 3 3 chr6 14656529 14656816 -174622738 - HERV17 LTR ERV1 -5 8621 8335 306 51 0 0 chr6 14656806 14656845 -174622709 - HERV17 LTR ERV1 -1078 7548 7510 * 10981 54 5 8 chr6 14656838 14658768 -174620786 - HERV17 LTR ERV1 -2607 6019 2430 * 14444 75 24 30 chr6 14658760 14659073 -174620481 - HERV17 LTR ERV1 -6619 2007 1693 2432 77 3 0 chr6 14659073 14659373 -174620181 - AluY SINE Alu -10 301 1 14444 75 24 30 chr6 14659373 14661058 -174618496 - HERV17 LTR ERV1 -6933 1693 22 3536 111 46 4 chr6 14661082 14661586 -174617968 - LTR17 LTR ERV1 0 780 256 298 215 0 35 chr6 14661635 14661720 -174617834 - L1MDa LINE L1 -4645 1737 1573 254 223 152 0 chr6 14662025 14662137 -174617417 - L1MDa LINE L1 -3888 2654 2526 2209 126 34 28 chr6 14662352 14662633 -174616921 + MER7C DNA MER2_type 10 295 -2733 2541 153 36 2 chr6 14662633 14663045 -174616509 + MSTB LTR MaLR 1 426 0 2209 126 34 28 chr6 14663045 14663121 -174616433 + MER7C DNA MER2_type 295 369 -233 1703 141 35 0 chr6 14663124 14663380 -174616174 - AluSx SINE Alu -12 300 36 487 276 58 12 chr6 14663394 14663648 -174615906 - L1MDa LINE L1 -4538 2002 1776 261 213 117 0 chr6 14663743 14663837 -174615717 - L1M4 LINE L1 -2924 3222 3118 599 285 92 14 chr6 14663857 14664282 -174615272 - L1M4 LINE L1 -3131 3015 2558 2022 130 0 17 chr6 14664322 14664623 -174614931 - AluSg SINE Alu -14 296 1 2268 156 22 34 chr6 14664631 14664939 -174614615 + MSTB LTR MaLR 22 325 -101 1547 113 41 0 chr6 14664939 14665160 -174614394 + MER30 DNA MER1_type 1 230 0 2268 156 22 34 chr6 14665160 14665261 -174614293 + MSTB LTR MaLR 325 426 0 404 228 94 34 chr6 14665284 14665433 -174614121 - L1M4 LINE L1 -3618 2528 2371 204 40 0 0 chr6 14666535 14666560 -174612994 + (CA)n Simple_repeat Simple_repeat 1 25 0 1826 177 44 36 chr6 14666621 14667006 -174612548 - MLT1B LTR MaLR 0 390 3 6933 123 123 117 chr6 14667434 14669121 -174610433 + pTR5 LTR ERV1 742 2438 0 3555 156 23 58 chr6 14669626 14670352 -174609202 + L1MB3 LINE L1 5450 6150 -33 21 0 0 0 chr6 14670378 14670399 -174609155 + AT_rich Low_complexity Low_complexity 1 21 0 857 165 44 118 chr6 14670665 14670789 -174608765 + L1MA9 LINE L1 6024 6119 -193 198 0 0 0 chr6 14670789 14670811 -174608743 + (CA)n Simple_repeat Simple_repeat 1 22 0 857 165 44 118 chr6 14670811 14670958 -174608596 + L1MA9 LINE L1 6119 6275 -37 338 295 127 52 chr6 14671594 14671963 -174607591 + LTR16C LTR ERVL 90 486 -5 2190 120 0 3 chr6 14672071 14672371 -174607183 + AluSx SINE Alu 1 299 -13 275 0 29 0 chr6 14672443 14672478 -174607076 + (TG)n Simple_repeat Simple_repeat 2 37 0 194 0 39 0 chr6 14672618 14672644 -174606910 + (TG)n Simple_repeat Simple_repeat 2 28 0 338 304 88 23 chr6 14672749 14672920 -174606634 - MIR3 SINE MIR -7 201 20 726 270 93 9 chr6 14672997 14673223 -174606331 - MIR SINE MIR 0 262 18 2829 69 0 0 chr6 14674877 14675238 -174604316 + L1PA8 LINE L1 5805 6165 -7 2618 205 22 16 chr6 14675741 14676296 -174603258 + MER74A LTR ERVL 1 558 0 2026 130 7 20 chr6 14676702 14677003 -174602551 + AluSx SINE Alu 1 297 -15 369 264 163 20 chr6 14677811 14678057 -174601497 + L1M4 LINE L1 4789 5069 -1077 1262 213 39 18 chr6 14678077 14678359 -174601195 - AluJo SINE Alu -20 292 5 4839 173 64 61 chr6 14678419 14680111 -174599443 - pTR5 LTR ERV1 0 2438 741 24 32 0 0 chr6 14680672 14680703 -174598851 + AT_rich Low_complexity Low_complexity 1 31 0 218 232 36 0 chr6 14680726 14680782 -174598772 + L2 LINE L2 1726 1783 -1531 2172 118 0 10 chr6 14682405 14682711 -174596843 + AluSx SINE Alu 1 303 -9 569 175 60 96 chr6 14682748 14682822 -174596732 + MER5A DNA MER1_type 1 76 -113 2206 115 3 0 chr6 14682822 14683117 -174596437 + AluSg SINE Alu 1 296 -14 569 175 60 96 chr6 14683117 14683208 -174596346 + MER5A DNA MER1_type 76 160 -29 601 292 55 18 chr6 14683890 14684164 -174595390 + Charlie7 DNA MER1_type 91 374 -2238 2201 152 26 5 chr6 14684220 14684602 -174594952 + MLT1B LTR MaLR 1 390 0 5477 162 34 27 chr6 14684643 14686156 -174593398 + pTR5 LTR ERV1 743 2438 0 321 210 190 0 chr6 14686161 14686261 -174593293 + Charlie7 DNA MER1_type 450 568 -2044 1441 183 84 7 chr6 14686551 14686825 -174592729 + AluJo SINE Alu 1 295 -17 261 222 58 159 chr6 14687100 14687307 -174592247 + HERVL LTR ERVL 1194 1379 -4275 428 136 0 86 chr6 14687457 14687538 -174592016 - MLT1A1 LTR MaLR 0 365 292 1799 185 3 3 chr6 14687539 14687842 -174591712 + AluJo SINE Alu 3 305 -7 354 174 41 10 chr6 14687867 14687965 -174591589 + GA-rich Low_complexity Low_complexity 4 104 0 1446 137 144 4 chr6 14687983 14688252 -174591302 - MLT1A1 LTR MaLR -55 341 2 1696 235 76 12 chr6 14688270 14688772 -174590782 - MER74B LTR ERVL -4 618 85 1435 148 169 57 chr6 14688806 14689046 -174590508 - MSTA LTR MaLR 0 428 216 2109 117 4 0 chr6 14689046 14689356 -174590198 + AluSx SINE Alu 1 311 0 1435 148 169 57 chr6 14689356 14689499 -174590055 - MSTA LTR MaLR -212 216 1 2922 162 31 23 chr6 14689860 14689919 -174589635 + MER89 LTR ERV1 1 58 -501 2133 107 0 0 chr6 14689919 14690231 -174589323 + AluSx SINE Alu 3 314 0 2496 87 0 3 chr6 14690233 14690544 -174589010 + AluSq SINE Alu 1 310 -3 2922 162 31 23 chr6 14690544 14691035 -174588519 + MER89 LTR ERV1 58 559 0 1378 170 78 40 chr6 14691430 14691853 -174587701 + L1MC5 LINE L1 7487 7925 -36 928 230 108 65 chr6 14691911 14692392 -174587162 - LTR8A LTR ERV1 0 727 116 407 178 78 93 chr6 14692498 14692673 -174586881 - LTR8 LTR ERV1 -396 145 1 * 1062 190 86 23 chr6 14692673 14693098 -174586456 + MER74A LTR ERVL 50 556 -2 1541 155 4 30 chr6 14693107 14693378 -174586176 - AluJb SINE Alu -13 299 36 2048 75 21 108 chr6 14693405 14693739 -174585815 + AluYb8 SINE Alu 1 305 -13 2041 138 0 13 chr6 14693750 14694055 -174585499 + AluSx SINE Alu 2 302 -10 607 226 0 16 chr6 14694067 14694191 -174585363 + FLAM_A SINE Alu 1 122 -11 1441 69 0 21 chr6 14694368 14694557 -174584997 + AluSq SINE Alu 128 312 -1 2516 63 0 13 chr6 14694848 14695163 -174584391 - AluY SINE Alu 0 311 1 204 40 0 0 chr6 14695353 14695378 -174584176 + (A)n Simple_repeat Simple_repeat 1 25 0 1892 173 33 92 chr6 14695671 14695938 -174583616 - MLT1C LTR MaLR 0 467 186 1857 187 152 0 chr6 14695938 14696360 -174583194 - MER66B LTR ERV1 0 486 1 1892 173 33 92 chr6 14696360 14696466 -174583088 - MLT1C LTR MaLR -281 186 127 2100 106 3 14 chr6 14696466 14696759 -174582795 - AluSx SINE Alu -17 295 6 1892 173 33 92 chr6 14696759 14696875 -174582679 - MLT1C LTR MaLR -340 127 6 281 229 86 0 chr6 14697168 14697238 -174582316 - L2 LINE L2 -46 3267 3192 2958 189 20 16 chr6 14697312 14697872 -174581682 - MER68 LTR ERV1 0 562 1 2564 51 0 0 chr6 14698615 14698911 -174580643 + AluY SINE Alu 1 296 -15 339 25 0 0 chr6 14699201 14699241 -174580313 + (TG)n Simple_repeat Simple_repeat 2 41 0 1848 169 0 7 chr6 14699432 14699734 -174579820 + AluJb SINE Alu 1 300 -12 375 277 57 21 chr6 14700309 14700450 -174579104 + MIR SINE MIR 1 146 -116 264 242 0 45 chr6 14700688 14700754 -174578800 + LTR67 LTR ERVL 3 65 -492 337 246 113 49 chr6 14700785 14700927 -174578627 + LTR67 LTR ERVL 140 290 -267 311 272 92 82 chr6 14701014 14701220 -174578334 + LTR67 LTR ERVL 329 536 -21 227 311 23 45 chr6 14701336 14701468 -174578086 + L2 LINE L2 2821 2949 -323 1967 122 31 88 chr6 14701507 14701652 -174577902 - MER65A LTR ERV1 -1 444 292 2056 125 7 0 chr6 14701652 14701940 -174577614 - AluSx SINE Alu -22 290 1 1967 122 31 88 chr6 14701940 14701971 -174577583 - MER65A LTR ERV1 -153 292 261 2410 77 0 32 chr6 14701971 14702283 -174577271 + AluY SINE Alu 1 302 -9 1967 122 31 88 chr6 14702283 14702490 -174577064 - MER65A LTR ERV1 -184 261 82 1280 126 5 0 chr6 14702490 14702680 -174576874 - AluSg/x SINE Alu 0 310 120 547 86 0 25 chr6 14702680 14702761 -174576793 - MER65A LTR ERV1 -366 79 1 * 700 218 51 13 chr6 14702761 14702916 -174576638 + MLT1J LTR MaLR 105 265 -246 353 238 50 10 chr6 14703112 14703213 -174576341 - LTR67 LTR ERVL -52 505 401 356 272 152 58 chr6 14703289 14703480 -174576074 - LTR67 LTR ERVL -263 294 86 400 218 69 10 chr6 14703486 14703587 -174575967 - MER91C DNA MER1_type -1 139 33 472 295 58 12 chr6 14703588 14703761 -174575793 - MLT1J2 LTR MaLR 0 450 270 210 238 0 0 chr6 14704276 14704318 -174575236 + CT-rich Low_complexity Low_complexity 1 42 0 2945 49 3 0 chr6 14704318 14704684 -174574870 - L1PA8 LINE L1 -1 6171 5805 3595 55 4 0 chr6 14705354 14705806 -174573748 - L1PA8 LINE L1 0 6172 5719 219 324 0 0 chr6 14706645 14706716 -174572838 + MER91B DNA MER1_type 1 71 -69 208 250 0 0 chr6 14706783 14706835 -174572719 + MER91B DNA MER1_type 79 130 -60 21 82 0 0 chr6 14707199 14707248 -174572306 + AT_rich Low_complexity Low_complexity 1 49 0 2223 94 24 0 chr6 14707339 14707627 -174571927 + AluSp SINE Alu 1 295 -18 1198 236 217 12 chr6 14707881 14708296 -174571258 - MLT1F LTR MaLR -42 500 1 2064 130 10 0 chr6 14708465 14708772 -174570782 + AluSq SINE Alu 1 310 -3 356 141 0 14 chr6 14708772 14708843 -174570711 + (GGGGA)n Simple_repeat Simple_repeat 3 72 0 419 362 74 29 chr6 14708912 14709763 -174569791 + L2 LINE L2 2202 3093 -179 6620 58 134 64 chr6 14710022 14711114 -174568440 + MER11A LTR ERVK 2 1266 0 749 254 84 50 chr6 14711265 14711683 -174567871 + MLT1L LTR MaLR 109 607 -8 215 190 68 181 chr6 14711751 14711834 -174567720 - MIR SINE MIR -2 260 169 2263 102 0 0 chr6 14711834 14712144 -174567410 - AluY SINE Alu 0 310 1 215 190 68 181 chr6 14712144 14712280 -174567274 - MIR SINE MIR -93 169 65 2145 111 7 3 chr6 14712897 14713186 -174566368 + AluSx SINE Alu 1 290 -22 996 175 52 65 chr6 14713468 14713585 -174565969 - MER33 DNA MER1_type -2261 324 207 1957 178 89 0 chr6 14713585 14713945 -174565609 + MSTD LTR MaLR 3 394 -2 996 175 52 65 chr6 14713945 14714118 -174565436 - MER33 DNA MER1_type -2378 207 38 396 196 164 32 chr6 14714290 14714479 -174565075 - L1ME4a LINE L1 -34 6087 5874 186 185 56 56 chr6 14714726 14714780 -174564774 + L2 LINE L2 2596 2649 -665 2413 92 0 3 chr6 14715079 14715383 -174564171 + AluSg SINE Alu 1 303 -7 2470 225 99 46 chr6 14715911 14716652 -174562902 + Zaphod DNA AcHobo 19 720 -3311 2127 115 10 7 chr6 14716652 14716957 -174562597 - AluSq SINE Alu -5 308 3 2470 225 99 46 chr6 14716957 14716987 -174562567 + Zaphod DNA AcHobo 720 747 -3284 1446 173 79 22 chr6 14716987 14717264 -174562290 + AluJo SINE Alu 1 293 -19 2470 225 99 46 chr6 14717264 14717383 -174562171 + Zaphod DNA AcHobo 747 957 -3074 1962 107 43 11 chr6 14717407 14717688 -174561866 - AluSc SINE Alu -19 290 1 2436 89 0 10 chr6 14717731 14718045 -174561509 + AluY SINE Alu 1 311 0 1866 199 22 10 chr6 14718050 14718462 -174561092 + Zaphod DNA AcHobo 3607 4023 -8 832 247 44 68 chr6 14718587 14718929 -174560625 + L1MC4 LINE L1 7331 7672 -323 677 192 0 8 chr6 14719027 14719152 -174560402 + FLAM_C SINE Alu 1 124 -19 420 65 97 0 chr6 14719152 14719276 -174560278 + (TA)n Simple_repeat Simple_repeat 1 136 0 458 207 7 64 chr6 14719835 14719975 -174559579 - L1ME LINE L1 -3997 2724 2593 360 250 35 5 chr6 14719975 14720118 -174559436 + MER58 DNA MER1_type 1 2420 0 561 195 29 17 chr6 14720118 14720292 -174559262 - L1ME LINE L1 -3980 2560 2385 1384 172 0 52 chr6 14720297 14720547 -174559007 - AluJo SINE Alu -75 237 1 1584 246 38 12 chr6 14720547 14721047 -174558507 - L1ME LINE L1 -4160 2380 1868 316 305 28 22 chr6 14721119 14721260 -174558294 - L1ME LINE L1 -5937 593 21 489 290 122 42 chr6 14721884 14722145 -174557409 - MLT1K LTR MaLR -33 555 316 2234 121 0 3 chr6 14722145 14722450 -174557104 + AluSx SINE Alu 1 304 -8 489 290 122 42 chr6 14722450 14722465 -174557089 - MLT1K LTR MaLR -272 316 304 2179 92 35 0 chr6 14722465 14722748 -174556806 - AluSp SINE Alu -20 293 1 489 290 122 42 chr6 14722748 14722914 -174556640 - MLT1K LTR MaLR -284 304 5 290 254 0 0 chr6 14722954 14723017 -174556537 - MIR SINE MIR -6 256 194 2668 199 73 50 chr6 14723026 14723606 -174555948 + L1ME2 LINE L1 5362 5966 -198 2391 87 0 0 chr6 14723606 14723904 -174555650 + AluSg SINE Alu 1 298 -12 2668 199 73 50 chr6 14723904 14724108 -174555446 + L1ME2 LINE L1 5966 6164 0 270 215 31 0 chr6 14724226 14724291 -174555263 + MER116 DNA Mariner 13 79 -1 656 63 0 0 chr6 14724438 14724517 -174555037 + MADE1 DNA Mariner 1 79 -1 30 69 0 0 chr6 14725305 14725363 -174554191 + GC_rich Low_complexity Low_complexity 1 58 0 27 49 0 0 chr6 14725637 14725678 -174553876 + GC_rich Low_complexity Low_complexity 1 41 0 267 269 54 130 chr6 14726360 14726655 -174552899 - L2 LINE L2 -27 3286 3015 1614 182 55 3 chr6 14726655 14726984 -174552570 - MER7A DNA MER2_type -1 345 2 267 269 54 130 chr6 14726984 14727004 -174552550 - L2 LINE L2 -298 3015 2995 214 291 18 0 chr6 14728588 14728643 -174550911 - L2 LINE L2 -30 3242 3187 2301 96 0 0 chr6 14729707 14729998 -174549556 - AluSg SINE Alu -19 291 1 1833 158 0 33 chr6 14730006 14730309 -174549245 - AluJo SINE Alu -19 293 1 550 187 0 0 chr6 14730509 14730616 -174548938 + L1MB8 LINE L1 3673 3779 -2367 4136 159 64 93 chr6 14730658 14730889 -174548665 + L1MB8 LINE L1 4494 4730 -1448 564 154 0 39 chr6 14730889 14730993 -174548561 + FRAM SINE Alu 74 173 -3 4136 159 64 93 chr6 14730993 14731601 -174547953 + L1MB8 LINE L1 4730 5355 -823 1611 188 98 22 chr6 14731601 14731968 -174547586 - MSTD LTR MaLR 0 396 2 4136 159 64 93 chr6 14731968 14732775 -174546779 + L1MB8 LINE L1 5355 6177 -1 1050 160 12 0 chr6 14733124 14733293 -174546261 - AluJb SINE Alu -22 290 120 2451 84 7 0 chr6 14733639 14733947 -174545607 - AluSg SINE Alu 0 310 1 898 118 0 15 chr6 14734629 14734764 -174544790 + FLAM_C SINE Alu 1 133 0 2523 50 0 50 chr6 14735106 14735428 -174544126 - AluY SINE Alu -5 306 1 2238 128 0 6 chr6 14735568 14735880 -174543674 - AluSx SINE Alu 0 312 3 35 24 0 0 chr6 14735913 14735955 -174543599 + AT_rich Low_complexity Low_complexity 1 42 0 738 148 26 0 chr6 14735955 14736070 -174543484 - FLAM_C SINE Alu -15 118 1 2361 85 3 0 chr6 14736560 14736855 -174542699 + AluSp SINE Alu 1 296 -17 322 291 10 10 chr6 14737232 14737335 -174542219 - L1ME4a LINE L1 -211 5910 5808 1899 151 0 31 chr6 14738034 14738353 -174541201 - AluJb SINE Alu -3 309 1 590 270 94 4 chr6 14738678 14738911 -174540643 - L1ME3 LINE L1 -7 6155 5902 2428 91 10 0 chr6 14739790 14740098 -174539456 + AluSq SINE Alu 1 311 -2 2152 122 3 0 chr6 14740438 14740733 -174538821 + AluSg SINE Alu 1 296 -14 29 47 0 0 chr6 14741452 14741495 -174538059 + AT_rich Low_complexity Low_complexity 1 43 0 2269 92 0 13 chr6 14741521 14741824 -174537730 + AluSq SINE Alu 1 299 -14 2134 135 3 0 chr6 14741868 14742179 -174537375 - AluSx SINE Alu 0 312 1 2544 62 0 0 chr6 14742189 14742494 -174537060 - AluY SINE Alu -6 305 1 21 0 0 0 chr6 14743144 14743165 -174536389 + AT_rich Low_complexity Low_complexity 1 21 0 2370 104 7 0 chr6 14743336 14743643 -174535911 + AluSx SINE Alu 2 310 -2 1481 92 23 5 chr6 14744028 14744246 -174535308 - L1PB1 LINE L1 -2 6149 5928 264 154 0 0 chr6 14744745 14744797 -174534757 + T-rich Low_complexity Low_complexity 1 52 0 820 130 0 22 chr6 14745144 14745282 -174534272 + AluSc SINE Alu 173 307 -2 821 181 0 0 chr6 14745674 14745807 -174533747 + FLAM_C SINE Alu 7 139 -4 2727 152 61 8 chr6 14746141 14746667 -174532887 - L1MB3 LINE L1 -1 6182 5629 857 128 149 0 chr6 14746767 14746915 -174532639 - AluSg/x SINE Alu -2 307 138 314 238 30 50 chr6 14747715 14747816 -174531738 - MIR SINE MIR -67 141 43 651 209 40 40 chr6 14748115 14748292 -174531262 + MER104 DNA MER2_type 1 177 -3 1013 171 46 37 chr6 14748673 14748889 -174530665 + AluJo SINE Alu 87 304 -8 2213 83 38 3 chr6 14749168 14749456 -174530098 + AluSx SINE Alu 1 298 -14 2277 92 3 0 chr6 14750507 14750800 -174528754 - AluSg SINE Alu -16 294 1 21 0 0 0 chr6 14751370 14751391 -174528163 + AT_rich Low_complexity Low_complexity 1 21 0 1905 118 0 67 chr6 14751739 14752053 -174527501 + AluSx SINE Alu 2 294 -18 1782 144 13 39 chr6 14753488 14753800 -174525754 - AluJb SINE Alu -8 304 1 2081 135 0 0 chr6 14753828 14754125 -174525429 + AluJb SINE Alu 1 297 -15 252 225 28 70 chr6 14754143 14754214 -174525340 - MLT1K LTR MaLR -35 553 486 797 144 0 0 chr6 14754624 14754742 -174524812 + FLAM_C SINE Alu 3 120 -13 2360 93 10 0 chr6 14755048 14755350 -174524204 - AluSq SINE Alu 0 313 9 2517 74 0 7 chr6 14755362 14755672 -174523882 - AluSx SINE Alu -4 308 1 233 29 29 0 chr6 14756044 14756078 -174523476 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2155 114 0 10 chr6 14756476 14756773 -174522781 + AluSg SINE Alu 1 294 -16 565 260 57 111 chr6 14756914 14757286 -174522268 - MLT1L LTR MaLR -45 508 207 2031 101 73 0 chr6 14757685 14757971 -174521583 + AluSx SINE Alu 1 307 -5 2262 126 0 0 chr6 14757979 14758288 -174521266 + AluJb SINE Alu 1 309 -3 1630 108 24 12 chr6 14758332 14758557 -174520997 - HSMAR2 DNA Mariner 0 1302 1072 1715 175 19 7 chr6 14758557 14758865 -174520689 - AluJb SINE Alu 0 312 1 1630 108 24 12 chr6 14758865 14758888 -174520666 - HSMAR2 DNA Mariner -230 1072 1051 705 164 0 9 chr6 14758917 14759033 -174520521 - FLAM_C SINE Alu -27 116 2 1094 151 0 6 chr6 14759038 14759210 -174520344 - AluJb SINE Alu -8 304 134 2422 92 0 7 chr6 14759210 14759513 -174520041 - AluSg SINE Alu -8 302 2 1016 132 18 12 chr6 14759520 14759687 -174519867 - HSMAR2 DNA Mariner -1134 168 1 3397 171 75 58 chr6 14759751 14759840 -174519714 + LTR39 LTR ERV1 1 87 -696 2336 102 0 0 chr6 14759840 14760145 -174519409 + AluSx SINE Alu 1 305 -7 3397 171 75 58 chr6 14760145 14760263 -174519291 + LTR39 LTR ERV1 87 202 -581 2247 113 7 0 chr6 14760263 14760564 -174518990 + AluSx SINE Alu 1 303 -9 3397 171 75 58 chr6 14760564 14761037 -174518517 + LTR39 LTR ERV1 202 699 -84 1761 113 0 4 chr6 14761037 14761284 -174518270 + AluSx SINE Alu 57 302 -10 3397 171 75 58 chr6 14761284 14761371 -174518183 + LTR39 LTR ERV1 699 783 0 1030 187 128 0 chr6 14761880 14762083 -174517471 - LTR39 LTR ERV1 0 783 555 1476 94 0 49 chr6 14762120 14762344 -174517210 + AluY SINE Alu 87 299 -12 826 167 0 0 chr6 14762367 14762505 -174517049 + FRAM SINE Alu 39 176 0 2580 86 0 0 chr6 14762517 14762830 -174516724 + AluSq SINE Alu 1 313 0 203 296 120 19 chr6 14763041 14763149 -174516405 + MIR3 SINE MIR 3 121 -87 1580 159 60 63 chr6 14763151 14763377 -174516177 - MLT1A1 LTR MaLR -1 364 138 2679 30 0 0 chr6 14763377 14763675 -174515879 - AluY SINE Alu -13 298 1 1580 159 60 63 chr6 14763675 14763813 -174515741 - MLT1A1 LTR MaLR -227 138 1 1750 167 16 13 chr6 14763901 14764207 -174515347 - AluJb SINE Alu -5 307 1 183 42 0 0 chr6 14764217 14764241 -174515313 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1900 108 7 58 chr6 14764245 14764540 -174515014 - AluSg SINE Alu -30 280 1 472 178 5 226 chr6 14764567 14764659 -174514895 - MIR SINE MIR -70 192 81 775 164 0 50 chr6 14764659 14764799 -174514755 + FLAM_C SINE Alu 1 133 0 472 178 5 226 chr6 14764799 14764822 -174514732 - MIR SINE MIR -181 81 139 2331 129 0 0 chr6 14764822 14765132 -174514422 + AluSx SINE Alu 1 310 -2 472 178 5 226 chr6 14765132 14765223 -174514331 - MIR SINE MIR -122 140 31 2045 128 3 7 chr6 14765309 14765606 -174513948 + AluSg SINE Alu 1 296 -14 1261 188 40 12 chr6 14766048 14766298 -174513256 - AluJb SINE Alu -25 287 31 4400 147 58 86 chr6 14766309 14767606 -174511948 - pTR5 LTR ERV1 -142 2296 743 2276 93 10 0 chr6 14767686 14767987 -174511567 - AluSq SINE Alu -9 304 1 2258 104 10 0 chr6 14768354 14768653 -174510901 - AluSx SINE Alu -10 302 1 1188 170 24 32 chr6 14768687 14768934 -174510620 + L1MB8 LINE L1 5934 6178 0 225 222 42 42 chr6 14768988 14769060 -174510494 - MIR3 SINE MIR -26 182 111 2267 113 0 6 chr6 14769226 14769537 -174510017 + AluSq SINE Alu 1 309 -4 1127 163 13 53 chr6 14769655 14769882 -174509672 + AluJo SINE Alu 87 304 -8 632 130 123 43 chr6 14770669 14770807 -174508747 + AluJb SINE Alu 143 291 -21 543 101 0 0 chr6 14770808 14770887 -174508667 + (GGGA)n Simple_repeat Simple_repeat 3 81 0 23 0 0 0 chr6 14770910 14770933 -174508621 + AT_rich Low_complexity Low_complexity 1 23 0 1724 141 39 33 chr6 14770974 14771280 -174508274 - AluJo SINE Alu -4 308 1 618 241 121 0 chr6 14771422 14771588 -174507966 + MIR SINE MIR 15 200 -62 2227 122 3 0 chr6 14771588 14771899 -174507655 + AluSx SINE Alu 1 312 0 2214 117 0 3 chr6 14772934 14773233 -174506321 + AluSx SINE Alu 1 298 -14 586 270 128 18 chr6 14773304 14773530 -174506024 - MLT1L LTR MaLR 0 615 365 237 190 0 69 chr6 14773610 14773630 -174505924 - MLT1L LTR MaLR -414 201 181 3156 110 131 8 chr6 14773630 14774158 -174505396 + LTR59 LTR ERV1 1 593 -4 237 190 0 69 chr6 14774158 14774195 -174505359 - MLT1L LTR MaLR -434 181 148 624 184 97 92 chr6 14774199 14774285 -174505269 - MER5A DNA MER1_type -2 187 103 2210 87 0 63 chr6 14774285 14774617 -174504937 - AluY SINE Alu 0 311 1 624 184 97 92 chr6 14774617 14774715 -174504839 - MER5A DNA MER1_type -86 103 2 2463 86 0 10 chr6 14774830 14775143 -174504411 + AluSx SINE Alu 1 310 -2 2090 110 65 0 chr6 14775145 14775436 -174504118 + AluSg SINE Alu 1 310 0 1054 255 63 94 chr6 14775458 14776011 -174503543 - MLT1F LTR MaLR 0 542 7 354 23 0 0 chr6 14776696 14776739 -174502815 + (TG)n Simple_repeat Simple_repeat 2 44 0 2256 81 3 3 chr6 14777518 14777929 -174501625 + AluSq SINE Alu 1 411 0 279 323 22 9 chr6 14779341 14779484 -174500070 - MIR SINE MIR -62 146 34 966 297 58 20 chr6 14779921 14780315 -174499239 - L2 LINE L2 -22 3291 2883 1113 244 22 35 chr6 14780328 14780644 -174498910 - LTR16A LTR ERVL -20 430 119 1275 279 55 4 chr6 14780714 14781187 -174498367 - L2 LINE L2 -426 2888 2392 602 195 2 0 chr6 14781187 14781301 -174498253 - MLT1D LTR MaLR 0 505 312 1247 139 143 58 chr6 14781304 14781563 -174497991 + AluSx SINE Alu 3 283 -29 183 80 0 0 chr6 14781630 14781655 -174497899 + (A)n Simple_repeat Simple_repeat 1 25 0 2304 91 3 10 chr6 14781829 14782125 -174497429 - AluSg SINE Alu -16 294 1 850 207 50 18 chr6 14782220 14782442 -174497112 - MIR SINE MIR -26 236 8 209 350 97 58 chr6 14784643 14784954 -174494600 - L2 LINE L2 0 3272 2950 213 298 38 92 chr6 14784966 14785097 -174494457 + MIR SINE MIR 20 143 -119 21 57 0 0 chr6 14785447 14785482 -174494072 + AT_rich Low_complexity Low_complexity 1 35 0 310 183 0 87 chr6 14786967 14787071 -174492483 - MIR SINE MIR -62 146 99 765 164 0 15 chr6 14787340 14787474 -174492080 + FLAM_C SINE Alu 1 132 -1 23 0 0 0 chr6 14787728 14787751 -174491803 + AT_rich Low_complexity Low_complexity 1 23 0 2155 86 0 17 chr6 14787978 14788269 -174491285 - AluSg SINE Alu -24 286 1 2764 134 125 15 chr6 14789124 14789669 -174489885 + L1MB3 LINE L1 5572 6176 -7 191 425 78 26 chr6 14790477 14790630 -174488924 - L2 LINE L2 -4 3268 3108 26 50 0 0 chr6 14790954 14790994 -174488560 + AT_rich Low_complexity Low_complexity 1 40 0 40 49 0 0 chr6 14791153 14791214 -174488340 + AT_rich Low_complexity Low_complexity 1 61 0 481 285 73 19 chr6 14794340 14794516 -174485038 - MIR SINE MIR -66 142 7 236 247 0 17 chr6 14794859 14794918 -174484636 - MIR3 SINE MIR -51 157 99 2126 122 3 0 chr6 14794919 14795230 -174484324 + AluSq SINE Alu 1 312 -1 314 358 44 0 chr6 14795788 14795925 -174483629 + L1MC/D LINE L1 5455 5597 -2211 492 243 77 12 chr6 14796049 14796218 -174483336 - MER104 DNA Tc2 0 180 1 1305 154 49 45 chr6 14796712 14796933 -174482621 - L1MB8 LINE L1 -65 6113 5889 2208 88 34 3 chr6 14796933 14797227 -174482327 - AluSc SINE Alu -4 305 3 1305 154 49 45 chr6 14797227 14797272 -174482282 - L1MB8 LINE L1 -289 5889 5846 288 119 0 0 chr6 14797633 14797675 -174481879 - L1MB8 LINE L1 -65 6113 6072 180 0 0 0 chr6 14798253 14798273 -174481281 + (A)n Simple_repeat Simple_repeat 1 20 0 678 248 95 0 chr6 14798501 14798723 -174480831 + L2 LINE L2 1710 1952 -1362 180 206 0 0 chr6 14798724 14798758 -174480796 + L2 LINE L2 2490 2523 -791 24 0 0 0 chr6 14798869 14798893 -174480661 + AT_rich Low_complexity Low_complexity 1 24 0 534 217 0 0 chr6 14798950 14799056 -174480498 - FLAM_C SINE Alu -1 142 37 473 194 71 10 chr6 14799236 14799334 -174480220 + HsTC2 DNA Tc2 43 146 -1752 281 241 71 27 chr6 14799412 14799555 -174479999 + HsTC2 DNA Tc2 1261 1591 -307 1220 150 0 5 chr6 14799555 14799748 -174479806 + AluJb SINE Alu 84 275 -37 967 221 80 23 chr6 14799751 14800050 -174479504 + HsTC2 DNA Tc2 1577 1892 -6 762 252 66 84 chr6 14800083 14800181 -174479373 + L2 LINE L2 2588 2686 -627 2395 65 0 19 chr6 14800181 14800491 -174479063 - AluY SINE Alu -7 304 1 762 252 66 84 chr6 14800491 14801131 -174478423 + L2 LINE L2 2686 3311 -2 325 288 40 71 chr6 14801597 14801795 -174477759 + MARNA DNA Mariner 27 218 -368 433 252 50 19 chr6 14802012 14802171 -174477383 + MARNA DNA Mariner 327 490 -96 255 291 101 50 chr6 14802265 14802444 -174477110 + MIR3 SINE MIR 20 207 -1 21 36 0 0 chr6 14802503 14802531 -174477023 + AT_rich Low_complexity Low_complexity 1 28 0 24 85 0 0 chr6 14802766 14802825 -174476729 + AT_rich Low_complexity Low_complexity 1 59 0 679 226 113 15 chr6 14803389 14803593 -174475961 - MER58A DNA MER1_type 0 224 1 475 231 153 26 chr6 14803671 14803900 -174475654 - MIR SINE MIR -1 261 4 1909 143 16 7 chr6 14803981 14804288 -174475266 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr6 14804374 14804395 -174475159 + AT_rich Low_complexity Low_complexity 1 21 0 2092 124 0 3 chr6 14807118 14807424 -174472130 + AluSx SINE Alu 1 305 -7 456 19 0 0 chr6 14808034 14808087 -174471467 + (CA)n Simple_repeat Simple_repeat 1 53 0 432 311 92 13 chr6 14808481 14808796 -174470758 + L1 LINE L1 3919 4258 -1888 1358 206 7 22 chr6 14809023 14809299 -174470255 + AluJb SINE Alu 6 277 -35 471 314 88 18 chr6 14810547 14810935 -174468619 + HAL1 LINE L1 1370 1784 -723 368 250 92 32 chr6 14810979 14811231 -174468323 + L1ME2 LINE L1 1330 1722 -5225 1660 188 52 20 chr6 14811235 14811581 -174467973 + MLT1A1 LTR MaLR 1 357 -8 1020 236 141 25 chr6 14811581 14812215 -174467339 + L1ME2 LINE L1 1717 2410 -4547 349 273 79 24 chr6 14812220 14812385 -174467169 + L1ME2 LINE L1 2583 2756 -4382 2191 269 94 7 chr6 14812468 14813297 -174466257 + L1ME2 LINE L1 4569 5469 -1488 1140 199 61 0 chr6 14813293 14813555 -174465999 + L1MA4 LINE L1 6018 6295 -5 * 3043 246 47 20 chr6 14813570 14814920 -174464634 + L1ME2 LINE L1 5454 6964 -11 1116 157 106 75 chr6 14815277 14815570 -174463984 + AluJb SINE Alu 1 302 0 1470 143 30 158 chr6 14816271 14816664 -174462890 + Tigger3(Golem) DNA MER2_type 1 3023 -6 6748 200 75 37 chr6 14816691 14818378 -174461176 + L1MB7 LINE L1 3836 5456 -1539 1478 174 20 33 chr6 14818378 14818683 -174460871 - AluJb SINE Alu -9 303 3 6748 200 75 37 chr6 14818683 14818799 -174460755 + L1MB7 LINE L1 5456 5566 -1429 1793 178 0 10 chr6 14818799 14819097 -174460457 + AluSx SINE Alu 1 295 -17 6748 200 75 37 chr6 14819097 14819306 -174460248 + L1MB7 LINE L1 5566 5765 -1230 2378 81 0 13 chr6 14819306 14819613 -174459941 + AluY SINE Alu 1 303 -8 6748 200 75 37 chr6 14819613 14820596 -174458958 + L1MB7 LINE L1 5765 6995 0 2697 242 174 61 chr6 14820587 14822598 -174456956 + L1MCa LINE L1 2 2395 -4031 * 1839 154 20 3 chr6 14822598 14822890 -174456664 + AluJb SINE Alu 1 297 -15 2697 242 174 61 chr6 14822890 14823267 -174456287 + L1MCa LINE L1 2395 2728 -3698 3259 109 4 30 chr6 14823272 14823765 -174455789 + LTR3b LTR ERVK 21 500 0 2627 245 85 30 chr6 14823768 14824431 -174455123 + L1MCa LINE L1 2726 3465 -2961 216 0 0 0 chr6 14824431 14824455 -174455099 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2627 245 85 30 chr6 14824455 14824808 -174454746 + L1MCa LINE L1 3465 3797 -2629 272 220 17 0 chr6 14824857 14824916 -174454638 + L1MC4a LINE L1 6624 6683 -1125 3616 215 28 62 chr6 14825107 14826199 -174453355 + L1MCa LINE L1 3779 4833 -1593 1798 181 3 3 chr6 14826627 14826926 -174452628 + AluJb SINE Alu 1 299 -13 1428 229 66 13 chr6 14827207 14827587 -174451967 + MER74B LTR ERVL 139 538 -84 296 161 36 18 chr6 14827537 14827593 -174451961 - MER88 LTR ERVL -310 154 98 * 25 0 0 0 chr6 14828398 14828423 -174451131 + AT_rich Low_complexity Low_complexity 1 25 0 314 210 16 0 chr6 14828871 14828933 -174450621 + U7 snRNA snRNA 1 63 0 307 293 218 30 chr6 14828936 14829247 -174450307 + HAL1b LINE L1 98 349 -999 1709 164 0 55 chr6 14829247 14829576 -174449978 + AluJb SINE Alu 1 311 -1 307 293 218 30 chr6 14829576 14829869 -174449685 + HAL1b LINE L1 349 816 -532 1045 196 107 38 chr6 14829882 14830199 -174449355 + L1ME1 LINE L1 5811 6149 -17 309 187 27 27 chr6 14830539 14830614 -174448940 + L1MC4a LINE L1 5957 6031 -1777 2102 114 7 10 chr6 14830652 14830951 -174448603 - AluSx SINE Alu -12 300 3 234 257 147 64 chr6 14830957 14831175 -174448379 + L1MC4a LINE L1 6108 6343 -1465 24 0 0 0 chr6 14831181 14831205 -174448349 + AT_rich Low_complexity Low_complexity 1 24 0 1768 110 8 11 chr6 14831248 14831512 -174448042 - AluSq SINE Alu -19 294 32 265 295 60 20 chr6 14831659 14831808 -174447746 + L1MC4 LINE L1 7872 8026 -16 337 200 47 118 chr6 14832390 14832560 -174446994 + L1ME4a LINE L1 5964 6121 0 385 284 26 17 chr6 14832923 14833039 -174446515 - L2 LINE L2 -4 3309 3193 226 359 148 0 chr6 14833428 14833556 -174445998 - L2 LINE L2 -10 3262 3116 557 228 56 41 chr6 14833848 14834048 -174445506 + L1ME LINE L1 5543 5662 -459 872 162 6 62 chr6 14834195 14834374 -174445180 + AluJo SINE Alu 114 282 -30 2255 88 0 10 chr6 14834439 14834735 -174444819 + AluSc SINE Alu 1 293 -16 22 0 0 0 chr6 14834892 14834914 -174444640 + GC_rich Low_complexity Low_complexity 1 22 0 1648 170 18 0 chr6 14834914 14835071 -174444483 - AluJo SINE Alu -30 282 116 2152 112 7 3 chr6 14835071 14835376 -174444178 - AluSx SINE Alu -6 306 1 1648 170 18 0 chr6 14835376 14835495 -174444059 - AluJo SINE Alu -196 116 1 267 318 100 6 chr6 14835864 14836034 -174443520 + L2 LINE L2 2090 2275 -1039 1040 124 6 19 chr6 14836133 14836294 -174443260 + FRAM SINE Alu 1 159 -17 266 71 0 24 chr6 14836750 14836792 -174442762 + (CAG)n Simple_repeat Simple_repeat 1 41 0 332 248 223 25 chr6 14836850 14837007 -174442547 - MIR SINE MIR -18 244 57 287 321 12 111 chr6 14837277 14837439 -174442115 + L2 LINE L2 3107 3252 -20 1447 177 23 35 chr6 14837664 14837974 -174441580 + AluJo SINE Alu 3 308 -4 1989 152 3 10 chr6 14838056 14838365 -174441189 - AluSx SINE Alu -5 307 1 688 203 31 0 chr6 14838778 14838906 -174440648 + Tigger3(Golem) DNA MER2_type 2896 3027 -2 2099 127 13 7 chr6 14839675 14839974 -174439580 + AluSx SINE Alu 1 301 -11 29 0 0 0 chr6 14840019 14840048 -174439506 + AT_rich Low_complexity Low_complexity 1 29 0 1855 123 22 7 chr6 14840437 14840750 -174438804 - AluSg SINE Alu 0 318 2 2212 96 30 0 chr6 14841045 14841346 -174438208 + AluSq SINE Alu 1 310 -3 2226 118 0 3 chr6 14841361 14841665 -174437889 + AluSx SINE Alu 1 303 -9 696 151 66 20 chr6 14842098 14842250 -174437304 + L1ME1 LINE L1 5392 5550 -616 1059 117 0 7 chr6 14842256 14842410 -174437144 + AluSq SINE Alu 1 153 -160 2334 112 0 0 chr6 14842552 14842864 -174436690 + AluSx SINE Alu 1 312 0 1927 222 75 10 chr6 14842870 14843352 -174436202 + L1ME1 LINE L1 5543 6055 -111 1429 179 18 47 chr6 14843354 14843628 -174435926 + Tigger7 DNA MER2_type 2 267 -466 655 149 0 0 chr6 14843629 14843723 -174435831 + Tigger7 DNA MER2_type 2390 2483 -4 401 224 35 26 chr6 14843724 14843840 -174435714 + L1ME1 LINE L1 6050 6166 0 216 0 0 0 chr6 14844193 14844217 -174435337 + (T)n Simple_repeat Simple_repeat 1 24 0 300 299 142 8 chr6 14844227 14844361 -174435193 - L2 LINE L2 -962 2352 2201 230 314 6 63 chr6 14844858 14845017 -174434537 + MER5B DNA MER1_type 4 153 -25 21 0 0 0 chr6 14847189 14847210 -174432344 + AT_rich Low_complexity Low_complexity 1 21 0 654 207 73 69 chr6 14847431 14847677 -174431877 - MIR SINE MIR 0 262 16 21 0 0 0 chr6 14848129 14848150 -174431404 + AT_rich Low_complexity Low_complexity 1 21 0 989 158 163 5 chr6 14848224 14848372 -174431182 - MER46A DNA MER2_type -2495 236 46 2166 120 10 0 chr6 14848372 14848671 -174430883 + AluSx SINE Alu 1 302 -10 989 158 163 5 chr6 14848671 14848725 -174430829 - MER46A DNA MER2_type -2685 46 2 2118 123 10 3 chr6 14850282 14850590 -174428964 + AluSx SINE Alu 1 310 -2 1655 109 0 0 chr6 14850952 14851163 -174428391 + AluSq SINE Alu 1 211 -102 462 297 63 18 chr6 14851514 14851800 -174427754 + L2 LINE L2 1698 1996 -1318 736 233 7 7 chr6 14851819 14851965 -174427589 - AluJb SINE Alu -27 285 140 283 321 79 21 chr6 14852030 14852220 -174427334 + L2 LINE L2 2100 2300 -1014 338 398 25 8 chr6 14852891 14853130 -174426424 + L2 LINE L2 2563 2805 -509 1868 164 0 10 chr6 14853137 14853441 -174426113 + AluJb SINE Alu 1 301 -11 2217 127 0 10 chr6 14853913 14854227 -174425327 + AluSx SINE Alu 1 311 -1 2332 71 0 26 chr6 14854371 14854682 -174424872 + AluY SINE Alu 1 303 -8 2192 82 0 3 chr6 14854869 14855151 -174424403 + AluY SINE Alu 17 297 -14 2354 84 0 10 chr6 14855204 14855501 -174424053 + AluSc SINE Alu 1 294 -15 2145 109 13 26 chr6 14855511 14855815 -174423739 + AluSx SINE Alu 1 300 -12 1669 135 90 11 chr6 14855839 14856106 -174423448 - AluJo SINE Alu -20 292 5 1450 208 3 18 chr6 14856931 14857215 -174422339 + AluJb SINE Alu 1 280 -32 252 0 0 0 chr6 14857611 14857639 -174421915 + (CA)n Simple_repeat Simple_repeat 1 28 0 282 292 0 10 chr6 14858010 14858106 -174421448 - MIR3 SINE MIR 0 208 114 22 0 0 0 chr6 14858215 14858237 -174421317 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr6 14859953 14860009 -174419545 + GC_rich Low_complexity Low_complexity 1 56 0 262 89 18 18 chr6 14860028 14860084 -174419470 + (CGG)n Simple_repeat Simple_repeat 2 57 0 213 39 0 0 chr6 14860225 14860242 -174419312 + (CTG)n Simple_repeat Simple_repeat 1 43 0 213 39 0 0 chr6 14860242 14860268 -174419286 + (CTG)n Simple_repeat Simple_repeat 3 28 0 211 239 9 53 chr6 14860469 14860582 -174418972 + G-rich Low_complexity Low_complexity 6 113 0 254 167 37 74 chr6 14860633 14860741 -174418813 + (CGGGG)n Simple_repeat Simple_repeat 5 108 0 186 43 0 0 chr6 14861891 14861914 -174417640 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2056 99 8 0 chr6 14861915 14862178 -174417376 - AluSx SINE Alu -47 265 1 245 257 52 81 chr6 14862565 14862701 -174416853 + L1ME LINE L1 5494 5625 -496 516 289 0 7 chr6 14863387 14863522 -174416032 - LTR67 LTR ERVL 0 557 424 2247 219 81 20 chr6 14864093 14864636 -174414918 - MLT1E LTR MaLR 0 593 18 1157 217 14 0 chr6 14864725 14864946 -174414608 - MER58A DNA MER1_type 0 224 1 4729 166 63 39 chr6 14865369 14866883 -174412671 + pTR5 LTR ERV1 742 2438 0 2106 162 22 11 chr6 14866884 14867248 -174412306 + THE1C LTR MaLR 8 375 0 934 186 71 89 chr6 14867266 14867616 -174411938 + MER2 DNA MER2_type 1 344 0 295 269 0 0 chr6 14867671 14867738 -174411816 - MER5A DNA MER1_type -105 84 18 1478 170 22 11 chr6 14867768 14868039 -174411515 - AluJo SINE Alu -38 274 1 1852 150 3 17 chr6 14868561 14868861 -174410693 - AluJo SINE Alu -16 296 1 855 134 0 0 chr6 14868915 14869034 -174410520 + FLAM_C SINE Alu 1 119 -24 207 0 0 0 chr6 14869035 14869058 -174410496 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 2272 93 28 0 chr6 14869069 14869360 -174410194 + AluSg SINE Alu 1 299 -11 238 278 0 14 chr6 14869560 14869632 -174409922 + A-rich Low_complexity Low_complexity 5 75 0 197 289 99 92 chr6 14869749 14869891 -174409663 - L2 LINE L2 -1 3271 3129 2071 118 35 0 chr6 14869950 14870239 -174409315 - AluSq SINE Alu -14 299 1 2432 88 0 0 chr6 14870670 14870976 -174408578 + AluSg SINE Alu 1 306 -4 2086 117 0 7 chr6 14871479 14871778 -174407776 + AluSx SINE Alu 1 297 -15 1504 198 118 32 chr6 14871924 14872389 -174407165 + MLT1D LTR MaLR 1 505 0 1098 271 89 26 chr6 14872927 14873352 -174406202 - LTR16A1 LTR ERVL 0 457 6 2143 127 3 0 chr6 14873359 14873658 -174405896 - AluSx SINE Alu -12 300 1 359 292 0 10 chr6 14874195 14874291 -174405263 - MER102b DNA MER1_type 0 341 247 2602 59 0 0 chr6 14874786 14875092 -174404462 + AluY SINE Alu 1 306 -5 3579 143 28 69 chr6 14875129 14875409 -174404145 + L1MB8 LINE L1 5482 5772 -406 1853 136 32 4 chr6 14875409 14875688 -174403866 + AluJb SINE Alu 1 287 -25 3579 143 28 69 chr6 14875688 14876129 -174403425 + L1MB8 LINE L1 5772 6173 -5 271 114 0 0 chr6 14876229 14876273 -174403281 + L2 LINE L2 3267 3310 -3 183 256 0 0 chr6 14876387 14876426 -174403128 + L2 LINE L2 3215 3253 -19 292 131 107 6 chr6 14876633 14876717 -174402837 - MER5A DNA MER1_type 0 189 47 25 0 0 0 chr6 14876735 14876760 -174402794 + AT_rich Low_complexity Low_complexity 1 25 0 2456 207 79 2 chr6 14876810 14877784 -174401770 - L1MC4 LINE L1 -143 7899 6691 2254 222 78 28 chr6 14877786 14878148 -174401406 - MLT1E LTR MaLR 0 593 251 1984 138 7 10 chr6 14878148 14878439 -174401115 + AluJb SINE Alu 1 290 -22 2280 121 0 0 chr6 14878444 14878750 -174400804 + AluSx SINE Alu 1 306 -6 2254 222 78 28 chr6 14878750 14878934 -174400620 - MLT1E LTR MaLR -345 248 15 654 221 43 0 chr6 14879020 14879183 -174400371 - L1MC4 LINE L1 -1372 6670 6501 513 205 0 0 chr6 14879184 14879296 -174400258 + (TA)n Simple_repeat Simple_repeat 1 112 0 1591 131 5 0 chr6 14879296 14879518 -174400036 - AluSg/x SINE Alu -13 297 75 2018 138 24 0 chr6 14880344 14880640 -174398914 - AluSq SINE Alu -10 303 1 2370 93 0 0 chr6 14881446 14881737 -174397817 + AluSx SINE Alu 1 291 -21 288 77 0 0 chr6 14882327 14882366 -174397188 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 0 0 0 chr6 14882520 14882544 -174397010 + (T)n Simple_repeat Simple_repeat 1 24 0 265 252 126 50 chr6 14882930 14883049 -174396505 + MIR SINE MIR 20 147 -61 1423 162 41 48 chr6 14883313 14883566 -174395988 + L1MB4 LINE L1 5887 6139 -41 1790 185 0 7 chr6 14883566 14883863 -174395691 + AluJb SINE Alu 1 295 -17 1423 162 41 48 chr6 14883863 14883899 -174395655 + L1MB4 LINE L1 6139 6174 -6 497 271 20 13 chr6 14883934 14884085 -174395469 + L1MC4a LINE L1 5771 5922 -1886 713 224 0 12 chr6 14884093 14884254 -174395300 - MIR SINE MIR -43 219 61 2274 109 0 6 chr6 14884257 14884569 -174394985 - AluSg SINE Alu 0 310 1 468 239 168 7 chr6 14884600 14884755 -174394799 + MER5A DNA MER1_type 4 183 -6 2492 67 0 13 chr6 14885061 14885376 -174394178 - AluY SINE Alu 0 311 1 267 189 0 0 chr6 14885846 14885899 -174393655 + MIR SINE MIR 100 152 -110 316 87 0 0 chr6 14885935 14885981 -174393573 + MER91B DNA MER1_type 18 63 -127 290 282 0 0 chr6 14886014 14886099 -174393455 + MIR SINE MIR 168 252 -10 1133 75 0 0 chr6 14886362 14886496 -174393058 + AluSq/x SINE Alu 1 134 -179 522 294 51 21 chr6 14886522 14886757 -174392797 + MIR SINE MIR 12 253 -9 2372 105 0 0 chr6 14887155 14887461 -174392093 - AluSx SINE Alu -6 306 1 2322 96 7 0 chr6 14887472 14887775 -174391779 - AluSp SINE Alu -7 306 2 26 0 0 0 chr6 14888188 14888214 -174391340 + AT_rich Low_complexity Low_complexity 1 26 0 334 289 10 0 chr6 14888214 14888311 -174391243 - L1MC4 LINE L1 -1339 6703 6606 31 96 0 0 chr6 14888361 14888455 -174391099 + AT_rich Low_complexity Low_complexity 1 94 0 2072 119 10 0 chr6 14888511 14888804 -174390750 - AluSx SINE Alu -16 296 1 2310 100 3 29 chr6 14888872 14889182 -174390372 + AluSq SINE Alu 2 303 -10 1617 151 12 47 chr6 14889192 14889511 -174390043 + AluJo SINE Alu 5 312 0 30 0 0 0 chr6 14889551 14889581 -174389973 + AT_rich Low_complexity Low_complexity 1 30 0 1915 107 3 57 chr6 14889783 14889928 -174389626 + AluSc SINE Alu 1 121 -188 261 57 0 0 chr6 14889928 14889963 -174389591 + (TA)n Simple_repeat Simple_repeat 1 35 0 1915 107 3 57 chr6 14889963 14890135 -174389419 + AluSc SINE Alu 121 301 -8 2554 170 31 7 chr6 14890215 14890667 -174388887 - MLT1C LTR MaLR -4 463 1 1711 140 7 7 chr6 14890875 14891146 -174388408 - AluSx SINE Alu -29 283 13 284 256 64 64 chr6 14891271 14891396 -174388158 - MIR SINE MIR -132 130 6 1668 104 0 90 chr6 14891525 14891814 -174387740 - AluSq SINE Alu -20 293 31 3968 167 107 39 chr6 14891814 14893117 -174386437 + pTR5 LTR ERV1 743 2438 0 1958 115 38 0 chr6 14893889 14894176 -174385378 + AluSx SINE Alu 1 298 -14 858 182 13 0 chr6 14894176 14894335 -174385219 + AluJb SINE Alu 134 294 -18 482 287 40 29 chr6 14894434 14894608 -174384946 + MIR3 SINE MIR 17 192 -16 210 206 0 0 chr6 14894626 14894689 -174384865 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 2184 92 0 3 chr6 14894702 14894995 -174384559 + AluSq SINE Alu 1 292 -21 2084 102 0 3 chr6 14895246 14895530 -174384024 - AluSc SINE Alu -20 289 7 467 284 22 40 chr6 14895585 14895807 -174383747 - L1MC/D LINE L1 -2287 5521 5304 434 204 35 56 chr6 14895975 14896117 -174383437 + MER58C DNA MER1_type 67 205 -10 2109 39 0 4 chr6 14896282 14896539 -174383015 + AluY SINE Alu 46 301 -10 1969 102 51 3 chr6 14896805 14897100 -174382454 - AluSx SINE Alu -3 309 1 377 288 75 7 chr6 14897244 14897390 -174382164 - MIR3 SINE MIR -50 158 3 27 0 0 0 chr6 14897444 14897471 -174382083 + AT_rich Low_complexity Low_complexity 1 27 0 2752 221 44 59 chr6 14897551 14897831 -174381723 - L1ME2 LINE L1 -44 6120 5837 2095 113 0 0 chr6 14897831 14898151 -174381403 + AluSx SINE Alu 1 320 0 2752 221 44 59 chr6 14898151 14898749 -174380805 - L1ME2 LINE L1 -327 5837 5254 2235 220 33 22 chr6 14898776 14899253 -174380301 - L1ME2 LINE L1 -971 5175 4688 2332 88 3 0 chr6 14899253 14899560 -174379994 + AluSp SINE Alu 1 308 -5 2235 220 33 22 chr6 14899560 14899682 -174379872 - L1ME2 LINE L1 -1458 4688 4569 385 319 19 19 chr6 14899711 14899868 -174379686 - L1MEd LINE L1 -5367 752 596 2125 120 0 13 chr6 14900475 14900791 -174378763 - AluSx SINE Alu 0 312 1 215 280 200 32 chr6 14900859 14900984 -174378570 + MER5A DNA MER1_type 21 166 -23 * 516 242 174 8 chr6 14900877 14901009 -174378545 - MER5A DNA MER1_type -26 163 10 442 88 0 0 chr6 14901034 14901091 -174378463 + AluSp/q SINE Alu 156 212 -101 1755 111 8 11 chr6 14901092 14901345 -174378209 + AluSx SINE Alu 32 285 -27 210 71 0 0 chr6 14901345 14901373 -174378181 + (TAAAG)n Simple_repeat Simple_repeat 2 29 0 2168 106 0 3 chr6 14901454 14901755 -174377799 - AluSg SINE Alu -10 300 1 1991 91 10 49 chr6 14902596 14902904 -174376650 - AluSx SINE Alu -16 296 1 594 249 158 39 chr6 14902915 14903200 -174376354 - L2 LINE L2 -5 3308 2990 22 0 0 0 chr6 14903369 14903391 -174376163 + AT_rich Low_complexity Low_complexity 1 22 0 329 217 57 74 chr6 14903471 14903619 -174375935 - L2 LINE L2 -207 3065 2923 1600 260 114 41 chr6 14904556 14904685 -174374869 + L2 LINE L2 1710 1828 -1486 2064 119 0 3 chr6 14904685 14904841 -174374713 - AluSx SINE Alu -20 292 136 2357 72 0 0 chr6 14904841 14905134 -174374420 - AluSc SINE Alu -16 293 1 2064 119 0 3 chr6 14905134 14905270 -174374284 - AluSx SINE Alu -176 136 1 1600 260 114 41 chr6 14905270 14905597 -174373957 + L2 LINE L2 1828 2130 -1184 1633 149 31 76 chr6 14905597 14905684 -174373870 + MER44D DNA MER2_type 1 90 -2401 1948 106 27 20 chr6 14905684 14905812 -174373742 + AluSx SINE Alu 1 127 -185 2063 132 0 3 chr6 14905812 14906122 -174373432 + AluSg1 SINE Alu 1 309 0 1948 106 27 20 chr6 14906122 14906285 -174373269 + AluSx SINE Alu 127 294 -18 1633 149 31 76 chr6 14906285 14906552 -174373002 + MER44D DNA MER2_type 90 609 0 1600 260 114 41 chr6 14906552 14906733 -174372821 + L2 LINE L2 2130 2395 -919 2717 158 32 29 chr6 14906735 14907108 -174372446 + MLT1D LTR MaLR 12 390 -115 1251 138 142 58 chr6 14907108 14907408 -174372146 - AluSx SINE Alu 0 324 3 2717 158 32 29 chr6 14907408 14907525 -174372029 + MLT1D LTR MaLR 390 505 0 1471 279 55 4 chr6 14907525 14907998 -174371556 + L2 LINE L2 2392 2888 -426 1108 251 47 33 chr6 14908025 14908384 -174371170 + LTR16A LTR ERVL 67 430 -20 1110 297 58 20 chr6 14908397 14908791 -174370763 + L2 LINE L2 2883 3291 -22 323 323 22 9 chr6 14909228 14909371 -174370183 + MIR SINE MIR 34 179 -62 2129 81 3 3 chr6 14910783 14911203 -174368351 - AluSq SINE Alu 0 420 1 354 23 0 0 chr6 14911982 14912025 -174367529 + (CA)n Simple_repeat Simple_repeat 2 44 0 1043 251 65 96 chr6 14912710 14913263 -174366291 + MLT1F LTR MaLR 7 542 0 1976 110 65 0 chr6 14913285 14913576 -174365978 - AluSg SINE Alu 0 310 1 2103 87 66 0 chr6 14913578 14913867 -174365687 - AluSg SINE Alu -2 308 1 2334 86 0 10 chr6 14913869 14914182 -174365372 - AluSx SINE Alu -2 310 1 628 184 97 92 chr6 14914297 14914395 -174365159 + MER5A DNA MER1_type 2 103 -86 2079 87 0 63 chr6 14914395 14914727 -174364827 + AluY SINE Alu 1 311 0 628 184 97 92 chr6 14914727 14914813 -174364741 + MER5A DNA MER1_type 103 187 -2 240 190 0 69 chr6 14914817 14914854 -174364700 + MLT1L LTR MaLR 148 181 -434 3154 110 131 8 chr6 14914854 14915382 -174364172 - LTR59 LTR ERV1 -4 593 1 240 190 0 69 chr6 14915382 14915402 -174364152 + MLT1L LTR MaLR 181 201 -414 600 270 128 18 chr6 14915482 14915708 -174363846 + MLT1L LTR MaLR 365 615 0 2088 117 0 3 chr6 14915779 14916078 -174363476 - AluSx SINE Alu -14 298 1 2107 122 3 0 chr6 14917113 14917424 -174362130 - AluSx SINE Alu 0 312 1 696 241 121 0 chr6 14917424 14917590 -174361964 - MIR SINE MIR -62 200 15 1571 147 39 33 chr6 14917732 14918038 -174361516 + AluJo SINE Alu 1 308 -4 23 0 0 0 chr6 14918079 14918102 -174361452 + AT_rich Low_complexity Low_complexity 1 23 0 411 163 0 0 chr6 14918124 14918204 -174361350 + CT-rich Low_complexity Low_complexity 1 80 0 506 141 156 44 chr6 14918205 14918340 -174361214 - AluSc SINE Alu -19 290 141 222 349 47 47 chr6 14919263 14919435 -174360119 - L2 LINE L2 -407 2907 2736 2258 99 0 3 chr6 14919442 14919754 -174359800 - AluSq SINE Alu -2 311 1 2061 200 51 16 chr6 14921143 14921593 -174357961 + MLT1C LTR MaLR 2 467 0 231 377 75 0 chr6 14921614 14921720 -174357834 - MLT1K LTR MaLR -145 443 330 355 167 0 17 chr6 14921727 14921787 -174357767 - MER46A DNA MER2_type 0 236 178 273 105 105 53 chr6 14921748 14921805 -174357749 + MER46A DNA MER2_type 87 146 -90 * 379 294 105 24 chr6 14922329 14922545 -174357009 - MIR SINE MIR -26 236 6 354 325 70 41 chr6 14922663 14922906 -174356648 - MIR SINE MIR -10 252 3 2125 118 0 3 chr6 14923340 14923645 -174355909 - AluSx SINE Alu -8 304 1 279 0 0 0 chr6 14926189 14926220 -174353334 + (TG)n Simple_repeat Simple_repeat 2 32 0 1629 153 3 29 chr6 14926798 14927106 -174352448 + AluJo SINE Alu 1 300 -12 290 245 296 13 chr6 14928532 14928691 -174350863 + L2 LINE L2 3104 3307 -6 640 271 70 35 chr6 14928810 14929039 -174350515 + MIR SINE MIR 18 254 -8 239 191 0 21 chr6 14929714 14929761 -174349793 + MIR SINE MIR 103 148 -114 407 194 54 43 chr6 14931010 14931103 -174348451 - L2 LINE L2 -25 3247 3154 214 258 103 31 chr6 14932422 14932519 -174347035 + MIR SINE MIR 49 152 -56 960 103 7 0 chr6 14933075 14933220 -174346334 + L1PA13 LINE L1 6018 6163 0 2350 65 0 0 chr6 14933625 14933919 -174345635 + AluY SINE Alu 1 294 -17 617 315 60 13 chr6 14934037 14934272 -174345282 + MIR SINE MIR 9 254 -8 2159 99 3 0 chr6 14934571 14934864 -174344690 + AluSg SINE Alu 1 294 -16 225 0 0 0 chr6 14934880 14934905 -174344649 + (GA)n Simple_repeat Simple_repeat 2 26 0 2396 33 7 23 chr6 14936580 14936882 -174342672 + AluY SINE Alu 3 299 -12 226 307 67 13 chr6 14938255 14938330 -174341224 - MIR SINE MIR -51 211 133 368 234 94 23 chr6 14938648 14938776 -174340778 + MER117 DNA MER1_type 5 141 -56 1847 197 95 12 chr6 14938787 14939218 -174340336 + MLT1C LTR MaLR 1 467 0 325 198 105 23 chr6 14939845 14939931 -174339623 + MIR SINE MIR 115 207 -55 180 0 0 0 chr6 14940221 14940241 -174339313 + (CAG)n Simple_repeat Simple_repeat 3 22 0 1881 113 0 82 chr6 14940508 14940826 -174338728 + AluJb SINE Alu 1 292 -20 346 287 37 24 chr6 14942262 14942408 -174337146 - MIR SINE MIR -62 146 11 261 163 0 0 chr6 14943350 14943399 -174336155 + (TG)n Simple_repeat Simple_repeat 2 50 0 1319 189 69 71 chr6 14943479 14943871 -174335683 + MER96B DNA MER1_type? 25 415 -2 425 316 105 46 chr6 14945019 14945456 -174334098 - HAL1 LINE L1 -1855 652 190 591 15 0 0 chr6 14947847 14947915 -174331639 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 2253 98 14 7 chr6 14947915 14948200 -174331354 - AluSp SINE Alu -23 290 1 633 156 7 14 chr6 14948359 14948500 -174331054 + CT-rich Low_complexity Low_complexity 2 141 0 768 286 86 26 chr6 14948604 14948943 -174330611 - L3 LINE CR1 -695 882 524 449 330 44 76 chr6 14949851 14950560 -174328994 + L2 LINE L2 2217 2902 -412 21 0 0 0 chr6 14951109 14951130 -174328424 + AT_rich Low_complexity Low_complexity 1 21 0 390 151 0 0 chr6 14951253 14951326 -174328228 + CT-rich Low_complexity Low_complexity 2 74 0 463 211 37 9 chr6 14951573 14951682 -174327872 + MLT1F1 LTR MaLR 6 117 -450 1460 251 99 12 chr6 14951772 14952259 -174327295 - L1MC4a LINE L1 -1963 5845 5317 484 264 112 48 chr6 14952516 14952811 -174326743 - L1MC4a LINE L1 -1095 5051 4738 317 137 20 0 chr6 14952818 14952869 -174326685 + U7 snRNA snRNA 2 53 -10 1423 187 87 22 chr6 14952904 14953225 -174326329 - MER2 DNA MER2_type -2 342 1 963 26 0 0 chr6 14953399 14953513 -174326041 + (TTCC)n Simple_repeat Simple_repeat 2 115 0 1622 188 35 0 chr6 14953536 14953823 -174325731 - AluJo SINE Alu -15 297 1 488 258 0 39 chr6 14954149 14954277 -174325277 - L2 LINE L2 0 3313 3191 361 125 33 33 chr6 14954303 14954423 -174325131 + (TA)n Simple_repeat Simple_repeat 2 121 0 413 323 30 36 chr6 14954669 14954836 -174324718 + MLT1K LTR MaLR 252 417 -171 1461 135 107 21 chr6 14954880 14955161 -174324393 + MSTA LTR MaLR 1 305 -123 4867 150 18 32 chr6 14955165 14956161 -174323393 - MER11C LTR ERVK 0 1071 1 746 154 88 0 chr6 14956161 14956278 -174323276 + MSTA LTR MaLR 300 428 0 237 222 48 32 chr6 14956282 14956345 -174323209 + MLT1K LTR MaLR 465 528 -60 373 220 48 30 chr6 14957113 14957280 -174322274 + MER20B DNA MER1_type 1 172 -47 206 32 32 0 chr6 14957799 14957830 -174321724 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1677 111 7 117 chr6 14957834 14958141 -174321413 - AluSg SINE Alu -37 273 1 2254 84 42 0 chr6 14959813 14960099 -174319455 - AluSc SINE Alu -11 298 1 249 33 0 0 chr6 14960192 14960222 -174319332 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1932 164 50 24 chr6 14960767 14961146 -174318408 + MLT1B LTR MaLR 1 389 -1 2427 69 30 3 chr6 14962670 14962973 -174316581 + AluY SINE Alu 1 311 0 236 239 87 11 chr6 14963811 14963903 -174315651 - MER5C DNA MER1_type -8 316 218 319 262 56 19 chr6 14963932 14964039 -174315515 - MER5C DNA MER1_type -212 112 2 221 313 162 0 chr6 14964411 14964510 -174315044 - L2 LINE L2 0 3313 3199 541 205 0 31 chr6 14965462 14965589 -174313965 + L2 LINE L2 3190 3312 -1 1908 211 54 18 chr6 14966547 14967118 -174312436 + L1MB7 LINE L1 1431 2115 -4269 * 2345 200 97 35 chr6 14967117 14967796 -174311758 + L1MB7 LINE L1 3635 4355 -2027 3736 154 71 43 chr6 14967815 14968307 -174311247 + L1MB7 LINE L1 4849 5326 -1094 2220 109 20 0 chr6 14968307 14968611 -174310943 + AluSx SINE Alu 3 312 0 3736 154 71 43 chr6 14968611 14969565 -174309989 + L1MB7 LINE L1 5326 6323 -97 962 159 12 18 chr6 14969571 14969741 -174309813 + AluJo SINE Alu 121 289 -23 290 197 14 0 chr6 14969748 14969819 -174309735 + L1MB3 LINE L1 6111 6182 -1 512 214 162 12 chr6 14969920 14970093 -174309461 - ORSL DNA AcHobo -76 199 1 21 0 0 0 chr6 14970605 14970626 -174308928 + AT_rich Low_complexity Low_complexity 1 21 0 462 193 73 27 chr6 14971715 14971865 -174307689 + MIR3 SINE MIR 22 178 -30 1910 199 146 7 chr6 14971945 14972383 -174307171 + MLT1D LTR MaLR 7 505 0 362 311 25 12 chr6 14974902 14975063 -174304491 + MIR SINE MIR 65 227 -35 1626 123 119 12 chr6 14975182 14975466 -174304088 + AluSg SINE Alu 1 311 0 491 270 15 115 chr6 14976574 14976714 -174302840 - MIR SINE MIR 0 262 160 2118 132 3 0 chr6 14976714 14977009 -174302545 - AluSx SINE Alu -16 296 1 491 270 15 115 chr6 14977009 14977138 -174302416 - MIR SINE MIR -102 160 20 203 159 45 0 chr6 14977315 14977359 -174302195 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 2316 111 0 0 chr6 14978559 14978865 -174300689 - AluSx SINE Alu -6 306 1 291 104 0 0 chr6 14979414 14979462 -174300092 + (TG)n Simple_repeat Simple_repeat 1 48 0 247 228 0 18 chr6 14980674 14980731 -174298823 - L2 LINE L2 0 3272 3217 1840 169 7 3 chr6 14981343 14981644 -174297910 - AluJo SINE Alu -10 302 1 1401 197 76 80 chr6 14981758 14982220 -174297334 + MLT1C LTR MaLR 8 467 0 369 300 22 39 chr6 14982222 14982402 -174297152 - MIR SINE MIR -76 186 10 1817 110 57 47 chr6 14983057 14983358 -174296196 - AluSx SINE Alu -8 304 1 420 181 12 0 chr6 14983370 14983453 -174296101 - MER5A DNA MER1_type -84 105 22 571 250 6 121 chr6 14983494 14983850 -174295704 - L1ME4a LINE L1 -225 6314 6000 761 181 0 0 chr6 14984458 14984585 -174294969 - FLAM_A SINE Alu -6 127 1 529 212 10 0 chr6 14985431 14985530 -174294024 - MER117 DNA MER1_type -97 100 1 182 170 213 0 chr6 14987599 14987646 -174291908 + L2 LINE L2 3235 3291 -22 388 244 119 28 chr6 14987703 14987879 -174291675 + MIR SINE MIR 68 259 -3 221 136 0 23 chr6 14988525 14988569 -174290985 + (TTC)n Simple_repeat Simple_repeat 2 44 0 2100 110 13 3 chr6 14991832 14992133 -174287421 - AluSx SINE Alu -8 304 1 24 0 0 0 chr6 14992289 14992313 -174287241 + AT_rich Low_complexity Low_complexity 1 24 0 3070 148 139 129 chr6 14992595 14992909 -174286645 - L1MC3 LINE L1 0 7785 7475 2097 123 0 0 chr6 14992909 14993209 -174286345 - AluSq SINE Alu -13 300 1 3070 148 139 129 chr6 14993209 14993479 -174286075 - L1MC3 LINE L1 -310 7475 7209 231 250 29 29 chr6 14993479 14993583 -174285971 - MLT1F1 LTR MaLR -450 117 14 3070 148 139 129 chr6 14993583 14993853 -174285701 - L1MC3 LINE L1 -576 7209 6818 1165 207 27 51 chr6 14993877 14994210 -174285344 - L1ME4a LINE L1 -780 5784 5460 402 173 0 0 chr6 14994216 14994291 -174285263 + CT-rich Low_complexity Low_complexity 1 75 0 566 276 91 5 chr6 14994291 14994512 -174285042 - L1ME4a LINE L1 -1086 5478 5239 2688 222 19 8 chr6 14994576 14995219 -174284335 - L1ME4a LINE L1 -2078 4486 3837 359 238 0 0 chr6 14995221 14995305 -174284249 - L1ME4a LINE L1 -5101 944 861 25 51 0 0 chr6 14995306 14995345 -174284209 + AT_rich Low_complexity Low_complexity 1 39 0 488 265 59 15 chr6 14995515 14995651 -174283903 - MIR SINE MIR -84 178 37 313 341 92 13 chr6 14995785 14996014 -174283540 - MLT1L LTR MaLR -23 592 346 2221 110 0 0 chr6 14996014 14996323 -174283231 + AluSc SINE Alu 1 309 0 299 114 0 0 chr6 14996595 14996639 -174282915 - MSTC LTR MaLR -12 416 373 2062 88 21 0 chr6 14996653 14996937 -174282617 - L1PA8 LINE L1 -2 6170 5881 2661 114 16 10 chr6 14996937 14997323 -174282231 - MSTC LTR MaLR -40 388 1 1991 130 0 7 chr6 14997802 14998103 -174281451 - AluSg SINE Alu -11 299 1 373 333 125 21 chr6 14998691 14998883 -174280671 - MIR SINE MIR -31 231 20 512 165 39 29 chr6 14998902 14999005 -174280549 + MER5B DNA MER1_type 1 104 -74 2298 146 59 7 chr6 14999033 14999437 -174280117 - MSTB1 LTR MaLR -3 429 5 243 223 253 33 chr6 14999689 14999847 -174279707 - L1ME3A LINE L1 -230 5940 5764 1554 170 43 0 chr6 14999885 15000162 -174279392 + AluJb SINE Alu 1 289 -23 379 290 61 20 chr6 15000173 15000664 -174278890 - L1ME3A LINE L1 -644 5526 4987 933 248 76 51 chr6 15000672 15001067 -174278487 - MLT1I LTR MaLR 0 409 5 706 158 83 0 chr6 15001346 15001466 -174278088 + FLAM_A SINE Alu 2 131 -2 302 262 36 12 chr6 15002745 15002829 -174276725 + L3 LINE CR1 1384 1469 -108 4478 145 58 48 chr6 15002836 15004222 -174275332 + pTR5 LTR ERV1 743 2438 0 357 24 0 0 chr6 15004233 15004275 -174275279 + (TA)n Simple_repeat Simple_repeat 2 43 0 946 245 77 44 chr6 15004341 15004763 -174274791 - MLT1C LTR MaLR -5 462 1 347 303 42 14 chr6 15005493 15005635 -174273919 + L1ME4a LINE L1 5962 6107 -14 2303 94 0 3 chr6 15006650 15006958 -174272596 - AluSc SINE Alu -2 307 1 256 276 0 13 chr6 15007612 15007688 -174271866 + C-rich Low_complexity Low_complexity 4 78 0 1809 179 0 3 chr6 15007749 15008061 -174271493 - AluJo SINE Alu -1 311 1 2064 120 17 0 chr6 15008138 15008437 -174271117 + AluSx SINE Alu 1 304 -8 308 312 58 1 chr6 15008900 15009049 -174270505 + MIR SINE MIR 20 177 -64 282 247 136 0 chr6 15011446 15011527 -174268027 + MLT1J1 LTR MaLR 1 92 -354 310 218 13 13 chr6 15011528 15011606 -174267948 + MLT1J1 LTR MaLR 369 446 0 1343 163 66 42 chr6 15011653 15011941 -174267613 - AluJb SINE Alu -12 300 6 2650 205 5 51 chr6 15012149 15012183 -174267371 - MLT2B3 LTR ERVL -6 548 514 405 0 0 0 chr6 15012183 15012228 -174267326 + (CA)n Simple_repeat Simple_repeat 2 46 0 2650 205 5 51 chr6 15012228 15012398 -174267156 - MLT2B3 LTR ERVL -40 514 338 2153 135 27 43 chr6 15012398 15012768 -174266786 - THE1B LTR MaLR 0 364 1 2650 205 5 51 chr6 15012768 15013132 -174266422 - MLT2B3 LTR ERVL -216 338 5 333 47 0 0 chr6 15013986 15014029 -174265525 + (TG)n Simple_repeat Simple_repeat 1 43 0 2212 106 0 0 chr6 15014637 15014940 -174264614 - AluSq SINE Alu -10 303 1 294 298 87 0 chr6 15015318 15015422 -174264132 - MIR SINE MIR -61 201 89 1620 199 89 35 chr6 15015638 15016010 -174263544 - MSTD LTR MaLR 0 396 5 207 235 29 29 chr6 15016187 15016255 -174263299 + CT-rich Low_complexity Low_complexity 5 72 0 557 229 135 86 chr6 15016417 15016662 -174262892 - LTR41 LTR ERVL -7 766 510 459 226 185 0 chr6 15016939 15017085 -174262469 - LTR41 LTR ERVL -581 192 20 292 277 53 11 chr6 15017408 15017502 -174262052 + L2 LINE L2 3172 3269 -44 366 241 46 0 chr6 15018334 15018421 -174261133 + L2 LINE L2 3223 3313 0 4307 144 60 94 chr6 15018426 15019717 -174259837 + pTR5 LTR ERV1 7 557 -157 1239 243 53 27 chr6 15019733 15020070 -174259484 - MLT1A1 LTR MaLR -15 350 5 485 301 15 36 chr6 15020074 15020270 -174259284 - MLT1K LTR MaLR -40 548 357 690 235 67 10 chr6 15020301 15020506 -174259048 - MER20B DNA MER1_type 0 219 3 1629 202 76 72 chr6 15020699 15021223 -174258331 - MLT1F LTR MaLR -13 529 4 414 149 11 21 chr6 15022269 15022363 -174257191 + CT-rich Low_complexity Low_complexity 2 94 0 1601 164 0 25 chr6 15022365 15022645 -174256909 - AluJo SINE Alu -39 273 1 497 229 107 16 chr6 15023373 15023495 -174256059 + MIR SINE MIR 21 153 -109 1877 148 62 28 chr6 15023495 15023852 -174255702 + THE1C LTR MaLR 1 369 -6 2177 114 0 0 chr6 15024027 15024325 -174255229 - AluSx SINE Alu -13 299 2 350 356 62 21 chr6 15026113 15026402 -174253152 + L2 LINE L2 2808 3108 -164 324 204 7 40 chr6 15027823 15027975 -174251579 + T-rich Low_complexity Low_complexity 4 150 0 220 254 36 0 chr6 15028553 15028608 -174250946 + CT-rich Low_complexity Low_complexity 1 57 0 273 367 0 11 chr6 15030051 15030141 -174249413 + MIR SINE MIR 36 124 -84 1469 161 32 57 chr6 15030194 15030510 -174249044 + AluJb SINE Alu 1 308 -4 1429 209 85 49 chr6 15031114 15031217 -174248337 + MLT1C LTR MaLR 6 104 -363 2207 110 0 3 chr6 15031217 15031526 -174248028 + AluSg SINE Alu 1 308 -2 1429 209 85 49 chr6 15031526 15031868 -174247686 + MLT1C LTR MaLR 104 467 0 489 17 0 0 chr6 15031889 15031947 -174247607 + (CA)n Simple_repeat Simple_repeat 2 59 0 591 208 47 0 chr6 15034487 15034593 -174244961 + FLAM_A SINE Alu 2 112 -30 233 324 164 27 chr6 15035032 15035545 -174244009 - L2 LINE L2 -338 2976 2394 1088 257 170 13 chr6 15036069 15036458 -174243096 + MLT1J2 LTR MaLR 1 450 0 1852 167 0 7 chr6 15037216 15037510 -174242044 - AluSx SINE Alu -20 292 1 336 191 0 0 chr6 15037695 15037779 -174241775 + CT-rich Low_complexity Low_complexity 2 85 0 847 211 0 0 chr6 15038915 15039062 -174240492 - FRAM SINE Alu -26 150 4 2059 128 0 0 chr6 15040952 15041248 -174238306 - AluSx SINE Alu -16 296 1 6309 48 10 15 chr6 15041492 15042297 -174237257 - L1PA8 LINE L1 0 6172 5372 1174 150 0 0 chr6 15042543 15042716 -174236838 - AluSg/x SINE Alu -2 308 136 304 242 63 0 chr6 15042801 15042896 -174236658 + MIR3 SINE MIR 101 201 -7 227 325 187 0 chr6 15043154 15043320 -174236234 - MIR SINE MIR -21 241 45 450 336 76 4 chr6 15043441 15043679 -174235875 + L2 LINE L2 3059 3313 0 198 0 0 0 chr6 15043948 15043970 -174235584 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2544 62 0 3 chr6 15044520 15044826 -174234728 - AluY SINE Alu -6 305 1 2166 116 7 3 chr6 15045680 15045981 -174233573 - AluSx SINE Alu -10 302 1 2274 88 3 0 chr6 15046378 15046689 -174232865 - AluSp SINE Alu 0 312 1 33 25 0 0 chr6 15046689 15046729 -174232825 + AT_rich Low_complexity Low_complexity 1 40 0 691 215 53 38 chr6 15047410 15047463 -174232091 + L2 LINE L2 3102 3153 -160 1870 144 77 12 chr6 15047463 15047803 -174231751 - MER47A DNA MER2_type -4 362 1 691 215 53 38 chr6 15047803 15047958 -174231596 + L2 LINE L2 3153 3313 0 373 200 104 17 chr6 15048137 15048252 -174231302 + L3 LINE CR1 1247 1371 -206 297 299 10 21 chr6 15048325 15048422 -174231132 + MER5A DNA MER1_type 72 167 -22 195 321 27 36 chr6 15048339 15048451 -174231103 - MER5A DNA MER1_type -75 114 4 * 2173 125 0 3 chr6 15048534 15048831 -174230723 + AluSq SINE Alu 7 302 -11 1023 121 83 0 chr6 15049201 15049358 -174230196 + THE1C LTR MaLR 1 170 -205 2088 153 31 0 chr6 15050353 15050674 -174228880 - MER7A DNA MER2_type 0 346 18 228 35 0 0 chr6 15051819 15051848 -174227706 + (CA)n Simple_repeat Simple_repeat 2 30 0 194 310 70 0 chr6 15053107 15053178 -174226376 - L2 LINE L2 -42 3230 3155 349 246 68 8 chr6 15053463 15053581 -174225973 - L2 LINE L2 -4 3309 3185 3176 175 109 71 chr6 15054143 15055052 -174224502 + MER63D DNA MER1_type 2 955 -106 2208 111 0 3 chr6 15055052 15055350 -174224204 - AluSg SINE Alu -9 301 5 3176 175 109 71 chr6 15055350 15055462 -174224092 + MER63D DNA MER1_type 955 1061 0 2310 95 0 0 chr6 15055547 15055860 -174223694 + AluSg SINE Alu 1 313 0 2014 132 10 7 chr6 15056603 15056931 -174222623 - AluJb SINE Alu 0 329 1 833 185 20 0 chr6 15057214 15057365 -174222189 - FRAM SINE Alu -25 151 1 270 81 0 0 chr6 15057692 15057729 -174221825 + (A)n Simple_repeat Simple_repeat 1 37 0 2355 92 0 7 chr6 15057731 15058067 -174221487 + AluSg SINE Alu 1 310 0 216 0 0 0 chr6 15058342 15058366 -174221188 + (GGGTG)n Simple_repeat Simple_repeat 4 27 0 192 250 20 60 chr6 15058682 15058782 -174220772 + L2 LINE L2 2566 2661 -653 265 232 0 0 chr6 15058829 15058898 -174220656 + MER5A DNA MER1_type 15 83 -106 1021 245 65 23 chr6 15058939 15059311 -174220243 + L1ME1 LINE L1 5752 6119 -45 2113 244 51 16 chr6 15059334 15059583 -174219971 + L1MC4 LINE L1 6990 7229 -813 734 205 58 18 chr6 15059583 15059754 -174219800 + MER45A DNA AcHobo 1 178 0 2113 244 51 16 chr6 15059754 15060194 -174219360 + L1MC4 LINE L1 7229 7893 -149 1052 231 86 10 chr6 15060292 15060708 -174218846 - L2 LINE L2 -261 3052 2608 1151 171 139 81 chr6 15062101 15062446 -174217108 + MLT1A1 LTR MaLR 1 365 0 2158 142 40 18 chr6 15062729 15063109 -174216445 + MLT1B LTR MaLR 3 390 0 2009 169 98 0 chr6 15063113 15063563 -174215991 + MLT1B-int LTR MaLR 5 600 -771 287 186 68 0 chr6 15063567 15063626 -174215928 + MLT1B LTR MaLR 95 157 -233 1635 153 11 30 chr6 15063908 15064176 -174215378 + AluJo SINE Alu 1 263 -49 216 0 0 0 chr6 15064849 15064873 -174214681 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2175 128 3 0 chr6 15064882 15065187 -174214367 + AluSx SINE Alu 1 306 -6 471 220 0 0 chr6 15066024 15066192 -174213362 + (TG)n Simple_repeat Simple_repeat 1 168 0 629 114 0 57 chr6 15066298 15066403 -174213151 + AluJo SINE Alu 37 135 -177 307 243 68 10 chr6 15066472 15066575 -174212979 - MIR SINE MIR -30 232 124 2309 108 0 0 chr6 15066610 15066916 -174212638 + AluSx SINE Alu 1 306 -6 360 0 0 0 chr6 15067210 15067250 -174212304 + (TG)n Simple_repeat Simple_repeat 1 40 0 279 71 0 0 chr6 15067250 15067292 -174212262 + (GA)n Simple_repeat Simple_repeat 2 43 0 195 167 0 0 chr6 15067894 15067930 -174211624 - MIR SINE MIR -61 147 112 2384 95 0 3 chr6 15067940 15068246 -174211308 - AluSx SINE Alu -7 305 1 543 179 77 8 chr6 15068737 15068854 -174210700 - Charlie4 DNA MER1_type -5 1956 1832 830 188 55 143 chr6 15068899 15069016 -174210538 - MLT1A2 LTR MaLR 0 467 341 5883 66 33 3 chr6 15069016 15069773 -174209781 + LTR17 LTR ERV1 1 780 0 830 188 55 143 chr6 15069773 15070083 -174209471 - MLT1A2 LTR MaLR -126 341 2 * 1034 218 25 8 chr6 15070083 15070309 -174209245 - Charlie4 DNA MER1_type -1692 269 40 382 94 0 0 chr6 15070313 15070366 -174209188 + MLT2A1 LTR ERVL 1 53 -391 2195 82 147 0 chr6 15070444 15070763 -174208791 + MLT2A1 LTR ERVL 39 404 -40 282 233 47 0 chr6 15070767 15070853 -174208701 + L1MC4 LINE L1 6614 6703 -1339 316 62 62 0 chr6 15070856 15070904 -174208650 + MLT2A1 LTR ERVL 390 440 -4 1851 154 7 10 chr6 15072087 15072392 -174207162 + AluJb SINE Alu 6 309 -3 2222 94 0 11 chr6 15072401 15072688 -174206866 + AluSx SINE Alu 21 304 -8 2142 136 3 0 chr6 15072984 15073286 -174206268 + AluSx SINE Alu 1 303 -9 254 316 106 52 chr6 15073511 15073916 -174205638 - L1ME LINE L1 -335 5786 5360 27 0 0 0 chr6 15074059 15074086 -174205468 + AT_rich Low_complexity Low_complexity 1 27 0 315 108 31 108 chr6 15074139 15074180 -174205374 - MER41D LTR ERV1 0 557 521 2040 122 140 34 chr6 15074180 15074397 -174205157 - MSTA LTR MaLR 0 428 235 1904 162 0 3 chr6 15074397 15074693 -174204861 - AluSx SINE Alu -17 295 1 2040 122 140 34 chr6 15074693 15074861 -174204693 - MSTA LTR MaLR -193 235 2 315 108 31 108 chr6 15074861 15074884 -174204670 - MER41D LTR ERV1 -36 521 498 193 191 24 0 chr6 15074890 15074932 -174204622 - MER5B DNA MER1_type -134 44 2 369 0 0 0 chr6 15074956 15074997 -174204557 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 330 28 18 chr6 15075627 15075736 -174203818 - MIR SINE MIR 0 262 153 324 243 200 37 chr6 15076114 15076439 -174203115 + L1MC4a LINE L1 5852 6229 -1579 724 130 32 24 chr6 15076865 15076988 -174202566 + FLAM_C SINE Alu 15 138 -5 1718 230 20 81 chr6 15077006 15077215 -174202339 + L1MC5 LINE L1 6657 6877 -1084 1936 120 0 0 chr6 15077215 15077473 -174202081 + AluSx SINE Alu 39 296 -16 1718 230 20 81 chr6 15077473 15077872 -174201682 + L1MC5 LINE L1 6877 7228 -733 4045 130 13 8 chr6 15077913 15078545 -174201009 + MER41B LTR ERV1 1 635 0 421 195 0 0 chr6 15078617 15078694 -174200860 - MLT1C LTR MaLR -184 283 207 536 177 83 44 chr6 15078730 15078911 -174200643 + L1MC5 LINE L1 7309 7496 -465 1932 183 93 45 chr6 15078914 15079310 -174200244 + MLT1C LTR MaLR 1 377 -90 2116 116 10 3 chr6 15079310 15079613 -174199941 - AluSx SINE Alu -7 305 1 1932 183 93 45 chr6 15079613 15079642 -174199912 + MLT1C LTR MaLR 377 403 -64 4860 83 40 16 chr6 15079642 15080317 -174199237 + LTR8 LTR ERV1 1 691 0 1932 183 93 45 chr6 15080317 15080332 -174199222 + MLT1C LTR MaLR 403 463 -4 917 203 146 22 chr6 15080338 15080659 -174198895 + L1MC5 LINE L1 7495 7855 -106 326 240 96 68 chr6 15080712 15080858 -174198696 + MER63 DNA MER1_type 687 1062 0 2204 105 0 22 chr6 15080942 15081119 -174198435 - AluSp SINE Alu -7 306 138 2486 92 0 0 chr6 15081119 15081423 -174198131 - AluSc SINE Alu -5 304 1 2204 105 0 22 chr6 15081423 15081558 -174197996 - AluSp SINE Alu -175 138 1 1371 190 129 92 chr6 15081618 15082117 -174197437 - LTR48 LTR ERV1 0 644 161 1877 141 0 17 chr6 15082117 15082408 -174197146 + AluJo SINE Alu 1 286 -26 1371 190 129 92 chr6 15082408 15082576 -174196978 - LTR48 LTR ERV1 -483 161 1 590 221 66 0 chr6 15082594 15082730 -174196824 + MIR SINE MIR 56 200 -62 27 0 0 0 chr6 15083353 15083380 -174196174 + AT_rich Low_complexity Low_complexity 1 27 0 396 285 13 20 chr6 15084013 15084164 -174195390 + MIR SINE MIR 80 229 -33 21 0 0 0 chr6 15084247 15084268 -174195286 + AT_rich Low_complexity Low_complexity 1 21 0 309 26 0 0 chr6 15084775 15084813 -174194741 + (TC)n Simple_repeat Simple_repeat 2 39 0 341 153 14 0 chr6 15084813 15084885 -174194669 + (TA)n Simple_repeat Simple_repeat 1 73 0 2210 105 3 0 chr6 15084885 15085170 -174194384 - AluSp SINE Alu -24 289 4 293 281 95 71 chr6 15085319 15085397 -174194157 + L2 LINE L2 2344 2419 -895 2631 181 50 6 chr6 15085397 15085894 -174193660 - LTR53 LTR ERVL 0 519 1 293 281 95 71 chr6 15085894 15086153 -174193401 + L2 LINE L2 2419 2689 -625 * 400 254 44 0 chr6 15086135 15086249 -174193305 - MER91A DNA MER1_type -76 120 2 254 332 113 43 chr6 15086378 15086776 -174192778 + L2 LINE L2 2828 3253 -19 222 37 0 0 chr6 15086868 15086895 -174192659 + (GA)n Simple_repeat Simple_repeat 2 28 0 480 111 0 0 chr6 15086907 15086979 -174192575 + (TA)n Simple_repeat Simple_repeat 2 73 0 256 289 44 0 chr6 15087514 15087604 -174191950 - MIR3 SINE MIR -8 200 107 2304 99 10 0 chr6 15087995 15088297 -174191257 - AluSp SINE Alu -6 307 3 248 306 0 0 chr6 15089448 15089510 -174190044 - MLT1I LTR MaLR -123 286 225 * 319 286 28 62 chr6 15089499 15089677 -174189877 - MLT1H LTR MaLR -281 268 97 2600 50 0 0 chr6 15090081 15090380 -174189174 - AluY SINE Alu -12 299 1 1851 158 66 34 chr6 15091163 15091512 -174188042 - MLT1A1 LTR MaLR -5 360 1 314 299 10 0 chr6 15092443 15092540 -174187014 + L1ME4a LINE L1 5955 6052 -69 734 267 98 7 chr6 15092541 15092826 -174186728 + MARNA DNA Mariner 261 571 -15 395 289 59 70 chr6 15093949 15094371 -174185183 - MLT1H LTR MaLR -2 565 46 190 259 0 17 chr6 15094813 15094871 -174184683 + MIR3 SINE MIR 142 198 -10 1112 105 0 20 chr6 15095146 15095299 -174184255 + AluSq/x SINE Alu 1 150 -162 282 56 0 0 chr6 15095299 15095335 -174184219 + (CA)n Simple_repeat Simple_repeat 1 36 0 191 285 8 98 chr6 15095654 15095777 -174183777 + L2 LINE L2 3202 3313 0 898 299 97 24 chr6 15097505 15098013 -174181541 - MLT1K LTR MaLR -18 570 26 243 274 0 24 chr6 15098029 15098106 -174181448 - L1MC4a LINE L1 -1631 6177 6101 2274 108 3 0 chr6 15098106 15098402 -174181152 + AluSq SINE Alu 1 297 -16 531 160 0 0 chr6 15098408 15098502 -174181052 + GA-rich Low_complexity Low_complexity 3 96 0 2003 44 0 48 chr6 15098644 15098895 -174180659 + AluY SINE Alu 54 292 -19 2452 254 51 37 chr6 15098903 15099452 -174180102 - L1MC4a LINE L1 -748 5398 5366 2272 108 0 13 chr6 15099452 15099768 -174179786 - AluSx SINE Alu 0 312 1 2452 254 51 37 chr6 15099768 15100403 -174179151 - L1MC4a LINE L1 -780 5366 4742 1778 149 22 0 chr6 15100445 15100713 -174178841 - AluJb SINE Alu -18 294 21 874 261 327 10 chr6 15100722 15101591 -174177963 - L2 LINE L2 -1592 1722 579 2207 105 7 26 chr6 15102500 15102806 -174176748 - AluSq SINE Alu -13 300 1 209 289 53 13 chr6 15104356 15104432 -174175122 + MIR SINE MIR 112 190 -72 529 254 133 38 chr6 15105537 15105777 -174173777 + Charlie8 DNA MER1_type 2 264 -2153 336 238 31 85 chr6 15106162 15106359 -174173195 - MLT1H LTR MaLR -200 349 131 4182 124 17 71 chr6 15106359 15106597 -174172957 + LTR62 LTR ERVK 1 250 -469 2359 109 0 0 chr6 15106597 15106909 -174172645 - AluSq SINE Alu -1 312 1 4182 124 17 71 chr6 15106909 15107430 -174172124 + LTR62 LTR ERVK 250 719 0 336 238 31 85 chr6 15107430 15107456 -174172098 - MLT1H LTR MaLR -418 131 105 1831 270 58 13 chr6 15107524 15108046 -174171508 + MER77 LTR ERV1 54 598 -7 726 280 109 25 chr6 15108190 15108558 -174170996 - L2 LINE L2 0 3313 2915 21 0 0 0 chr6 15108590 15108611 -174170943 + AT_rich Low_complexity Low_complexity 1 21 0 2080 139 30 0 chr6 15108614 15108916 -174170638 + AluSx SINE Alu 1 311 -1 210 71 0 0 chr6 15108916 15108944 -174170610 + (GAGAA)n Simple_repeat Simple_repeat 1 28 0 880 93 0 0 chr6 15110141 15110249 -174169305 + FLAM_C SINE Alu 1 108 -35 1413 281 101 65 chr6 15111201 15111835 -174167719 + L1ME4a LINE L1 59 746 -5373 1870 111 92 0 chr6 15111835 15112106 -174167448 + AluSq SINE Alu 3 298 -15 1413 281 101 65 chr6 15112106 15112515 -174167039 + L1ME4a LINE L1 746 1139 -4980 2414 81 3 13 chr6 15112612 15112922 -174166632 + AluSx SINE Alu 1 307 -5 403 301 135 17 chr6 15112939 15113228 -174166326 + HAL1 LINE L1 1433 1755 -752 2032 121 45 0 chr6 15113509 15113681 -174165873 - AluSx SINE Alu -7 305 113 198 0 0 0 chr6 15113681 15113703 -174165851 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 2032 121 45 0 chr6 15113703 15113820 -174165734 - AluSx SINE Alu -199 113 3 368 255 216 33 chr6 15113909 15114145 -174165409 + L1ME4a LINE L1 2093 2284 -3845 2409 83 10 0 chr6 15114145 15114446 -174165108 + AluSg SINE Alu 1 304 -6 368 255 216 33 chr6 15114446 15114875 -174164679 + L1ME4a LINE L1 2284 2880 -3249 1299 277 88 34 chr6 15114930 15115262 -174164292 + L1ME4a LINE L1 4312 4625 -1504 1900 128 3 54 chr6 15115262 15115575 -174163979 - AluJb SINE Alu -15 297 1 1299 277 88 34 chr6 15115575 15116148 -174163406 + L1ME4a LINE L1 4625 5266 -863 898 134 8 0 chr6 15116289 15116416 -174163138 + FLAM_C SINE Alu 1 128 -5 1798 35 22 35 chr6 15116631 15116861 -174162693 + AluY SINE Alu 80 306 -5 252 193 137 13 chr6 15116972 15117067 -174162487 + L1M1 LINE L1 5476 5584 -561 649 241 145 68 chr6 15117081 15117508 -174162046 + L1ME4a LINE L1 5421 5880 -224 21 36 0 0 chr6 15117584 15117612 -174161942 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 15118109 15118130 -174161424 + GC_rich Low_complexity Low_complexity 1 21 0 340 147 11 32 chr6 15118130 15118225 -174161329 + G-rich Low_complexity Low_complexity 6 98 0 682 277 21 25 chr6 15119980 15120215 -174159339 - MIR SINE MIR -10 252 19 1789 164 0 24 chr6 15121759 15122046 -174157508 - AluJb SINE Alu -20 292 13 804 136 7 57 chr6 15122073 15122213 -174157341 + FLAM_C SINE Alu 1 133 0 2254 98 14 0 chr6 15122892 15123179 -174156375 - AluSp SINE Alu -22 291 1 266 149 0 21 chr6 15123337 15123384 -174156170 + (TCCCC)n Simple_repeat Simple_repeat 5 50 0 724 183 13 9 chr6 15123384 15123609 -174155945 + CT-rich Low_complexity Low_complexity 1 226 0 768 286 86 26 chr6 15123679 15124018 -174155536 - L3 LINE CR1 -695 882 524 449 330 44 76 chr6 15124926 15125635 -174153919 + L2 LINE L2 2217 2902 -412 21 0 0 0 chr6 15126184 15126205 -174153349 + AT_rich Low_complexity Low_complexity 1 21 0 390 151 0 0 chr6 15126328 15126401 -174153153 + CT-rich Low_complexity Low_complexity 2 74 0 463 211 37 9 chr6 15126648 15126757 -174152797 + MLT1F1 LTR MaLR 6 117 -450 1460 251 99 12 chr6 15126847 15127334 -174152220 - L1MC4a LINE L1 -1963 5845 5317 484 264 112 48 chr6 15127591 15127886 -174151668 - L1MC4a LINE L1 -1095 5051 4738 317 137 20 0 chr6 15127893 15127944 -174151610 + U7 snRNA snRNA 2 53 -10 1423 187 87 22 chr6 15127979 15128300 -174151254 - MER2 DNA MER2_type -2 342 1 963 26 0 0 chr6 15128474 15128588 -174150966 + (TTCC)n Simple_repeat Simple_repeat 2 115 0 1622 188 35 0 chr6 15128611 15128898 -174150656 - AluJo SINE Alu -15 297 1 488 258 0 39 chr6 15129224 15129352 -174150202 - L2 LINE L2 0 3313 3191 361 125 33 33 chr6 15129378 15129498 -174150056 + (TA)n Simple_repeat Simple_repeat 2 121 0 413 323 30 36 chr6 15129744 15129911 -174149643 + MLT1K LTR MaLR 252 417 -171 1461 135 107 21 chr6 15129955 15130236 -174149318 + MSTA LTR MaLR 1 305 -123 4890 149 18 32 chr6 15130240 15131236 -174148318 - MER11C LTR ERVK 0 1071 1 746 154 88 0 chr6 15131236 15131353 -174148201 + MSTA LTR MaLR 300 428 0 237 222 48 32 chr6 15131357 15131420 -174148134 + MLT1K LTR MaLR 465 528 -60 373 220 48 30 chr6 15132188 15132355 -174147199 + MER20B DNA MER1_type 1 172 -47 206 32 32 0 chr6 15132874 15132905 -174146649 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1677 111 7 117 chr6 15132909 15133216 -174146338 - AluSg SINE Alu -37 273 1 2222 84 42 0 chr6 15134888 15135172 -174144382 - AluSc SINE Alu -13 296 1 249 33 0 0 chr6 15135265 15135295 -174144259 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1932 164 50 24 chr6 15135840 15136219 -174143335 + MLT1B LTR MaLR 1 389 -1 2443 66 30 3 chr6 15137743 15138046 -174141508 + AluY SINE Alu 1 311 0 268 217 87 11 chr6 15138886 15138978 -174140576 - MER5C DNA MER1_type -8 316 218 305 260 58 19 chr6 15139007 15139111 -174140443 - MER5C DNA MER1_type -212 112 5 218 313 162 0 chr6 15139486 15139585 -174139969 - L2 LINE L2 0 3313 3199 541 205 0 31 chr6 15140537 15140664 -174138890 + L2 LINE L2 3190 3312 -1 1908 214 52 15 chr6 15141622 15142193 -174137361 + L1MB7 LINE L1 1431 2115 -4269 * 2345 200 97 35 chr6 15142192 15142871 -174136683 + L1MB7 LINE L1 3635 4355 -2027 3705 156 71 43 chr6 15142890 15143382 -174136172 + L1MB7 LINE L1 4849 5326 -1094 2277 105 16 0 chr6 15143382 15143687 -174135867 + AluSx SINE Alu 3 312 0 3705 156 71 43 chr6 15143687 15144641 -174134913 + L1MB7 LINE L1 5326 6323 -97 962 159 12 18 chr6 15144647 15144817 -174134737 + AluJo SINE Alu 121 289 -23 290 197 14 0 chr6 15144824 15144895 -174134659 + L1MB3 LINE L1 6111 6182 -1 530 208 162 12 chr6 15144996 15145169 -174134385 - ORSL DNA AcHobo -76 199 1 21 0 0 0 chr6 15145681 15145702 -174133852 + AT_rich Low_complexity Low_complexity 1 21 0 462 193 73 27 chr6 15146791 15146941 -174132613 + MIR3 SINE MIR 22 178 -30 1910 199 146 7 chr6 15147021 15147459 -174132095 + MLT1D LTR MaLR 7 505 0 377 304 25 12 chr6 15149979 15150140 -174129414 + MIR SINE MIR 65 227 -35 1626 123 119 12 chr6 15150259 15150549 -174129005 + AluSg SINE Alu 1 317 0 491 270 15 115 chr6 15151657 15151797 -174127757 - MIR SINE MIR 0 262 160 2101 136 3 0 chr6 15151797 15152092 -174127462 - AluSx SINE Alu -16 296 1 491 270 15 115 chr6 15152092 15152221 -174127333 - MIR SINE MIR -102 160 20 203 159 45 0 chr6 15152398 15152442 -174127112 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 2273 118 0 0 chr6 15153642 15153948 -174125606 - AluSx SINE Alu -6 306 1 309 100 0 0 chr6 15154499 15154549 -174125005 + (TG)n Simple_repeat Simple_repeat 1 50 0 247 228 0 18 chr6 15155761 15155818 -174123736 - L2 LINE L2 0 3272 3217 1840 169 7 3 chr6 15156430 15156731 -174122823 - AluJo SINE Alu -10 302 1 1401 197 76 80 chr6 15156845 15157307 -174122247 + MLT1C LTR MaLR 8 467 0 369 300 22 39 chr6 15157309 15157489 -174122065 - MIR SINE MIR -76 186 10 1817 110 57 47 chr6 15158144 15158445 -174121109 - AluSx SINE Alu -8 304 1 420 181 12 0 chr6 15158457 15158540 -174121014 - MER5A DNA MER1_type -84 105 22 571 250 6 121 chr6 15158581 15158937 -174120617 - L1ME4a LINE L1 -225 5896 5582 761 181 0 0 chr6 15159545 15159672 -174119882 - FLAM_A SINE Alu -6 127 1 529 212 10 0 chr6 15160518 15160617 -174118937 - MER117 DNA MER1_type -97 100 1 182 170 213 0 chr6 15162686 15162733 -174116821 + L2 LINE L2 3235 3291 -22 388 244 119 28 chr6 15162790 15162966 -174116588 + MIR SINE MIR 68 259 -3 221 136 0 23 chr6 15163612 15163656 -174115898 + (TTC)n Simple_repeat Simple_repeat 2 44 0 279 231 215 92 chr6 15166619 15166814 -174112740 + MIR SINE MIR 12 230 -32 343 267 20 0 chr6 15167077 15167178 -174112376 - MIR SINE MIR -10 252 150 3984 153 24 13 chr6 15167179 15167877 -174111677 + MER50 LTR ERV1 1 706 -28 405 262 16 48 chr6 15167886 15168012 -174111542 - MIR SINE MIR -111 151 30 211 234 0 0 chr6 15168018 15168065 -174111489 + T-rich Low_complexity Low_complexity 1 47 0 200 306 47 35 chr6 15168109 15168194 -174111360 + L2 LINE L2 3222 3307 -6 242 291 26 58 chr6 15168512 15168669 -174110885 + MIR SINE MIR 16 165 -59 251 329 71 35 chr6 15168746 15168916 -174110638 - MLT1J2 LTR MaLR -13 437 262 341 206 28 65 chr6 15168966 15169073 -174110481 - MLT1J2 LTR MaLR -321 129 27 554 281 139 8 chr6 15170083 15170321 -174109233 + L2 LINE L2 3042 3310 -3 928 249 190 57 chr6 15171024 15171502 -174108052 + MLT1F LTR MaLR 1 542 0 2081 178 5 22 chr6 15171587 15171638 -174107916 - MLT1A1 LTR MaLR 0 365 315 2291 130 92 27 chr6 15171638 15172039 -174107515 + MSTA LTR MaLR 2 428 0 2081 178 5 22 chr6 15172039 15172357 -174107197 - MLT1A1 LTR MaLR -50 315 2 466 302 58 9 chr6 15172597 15172822 -174106732 - MLT1K LTR MaLR -15 573 338 306 264 25 33 chr6 15173090 15173211 -174106343 - MIR3 SINE MIR -80 128 9 261 281 53 26 chr6 15173250 15173364 -174106190 - MIR SINE MIR -19 243 127 582 229 0 0 chr6 15173675 15173917 -174105637 + (CA)n Simple_repeat Simple_repeat 1 242 0 257 274 129 23 chr6 15174711 15174884 -174104670 + MIR SINE MIR 12 206 -56 232 319 17 50 chr6 15176179 15176298 -174103256 - MIR3 SINE MIR -87 121 7 1896 112 81 0 chr6 15176624 15176909 -174102645 - AluSx SINE Alu -4 308 1 583 250 104 5 chr6 15177959 15178151 -174101403 + MIR SINE MIR 2 212 -50 227 318 24 24 chr6 15178201 15178286 -174101268 - MIR3 SINE MIR -45 163 79 287 146 0 0 chr6 15180249 15180297 -174099257 - MIR3 SINE MIR -48 160 113 232 172 78 16 chr6 15180694 15180758 -174098796 + L2 LINE L2 3236 3303 -10 2131 118 7 0 chr6 15180937 15181226 -174098328 + AluSq SINE Alu 1 291 -22 234 278 44 56 chr6 15181519 15181609 -174097945 + L3b LINE CR1 1407 1495 -88 221 128 21 0 chr6 15181739 15181786 -174097768 + GA-rich Low_complexity Low_complexity 1 48 0 28 48 0 0 chr6 15182603 15182645 -174096909 + GC_rich Low_complexity Low_complexity 1 42 0 189 0 0 0 chr6 15182998 15183019 -174096535 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1611 184 29 0 chr6 15184491 15184768 -174094786 + MLT1A1 LTR MaLR 1 285 -80 482 239 18 0 chr6 15185112 15185221 -174094333 - MIR SINE MIR -106 156 46 795 272 76 23 chr6 15185437 15185779 -174093775 - MARNA DNA Mariner -166 420 61 1830 136 4 7 chr6 15185897 15186177 -174093377 - AluJb SINE Alu 0 312 34 280 206 118 0 chr6 15186898 15186966 -174092588 + MLT1L LTR MaLR 23 98 -517 916 225 37 0 chr6 15186999 15187190 -174092364 + MER58A DNA MER1_type 27 224 0 667 276 69 20 chr6 15187190 15187575 -174091979 + MLT1L LTR MaLR 148 597 -18 469 315 80 14 chr6 15187703 15187916 -174091638 - MIR SINE MIR -34 228 2 217 303 169 0 chr6 15187934 15188023 -174091531 + MIR SINE MIR 48 151 -111 2062 201 50 10 chr6 15190542 15190941 -174088613 - MLT1F LTR MaLR -4 538 124 648 269 85 15 chr6 15191255 15191456 -174088098 - MIR SINE MIR -21 241 27 326 231 15 0 chr6 15191640 15191705 -174087849 + LTR33 LTR ERVL 306 371 -150 662 144 152 8 chr6 15191708 15191838 -174087716 + MLT1D LTR MaLR 1 149 -356 1020 226 46 95 chr6 15191838 15192020 -174087534 - MER39 LTR ERV1 0 707 518 1842 134 48 3 chr6 15192020 15192312 -174087242 - AluSg SINE Alu -5 305 1 1020 226 46 95 chr6 15192312 15192659 -174086895 - MER39 LTR ERV1 -189 518 5 916 214 83 76 chr6 15192675 15192875 -174086679 + MLT1D LTR MaLR 166 370 -135 2279 110 0 3 chr6 15192875 15193184 -174086370 - AluSq SINE Alu -4 309 2 916 214 83 76 chr6 15193184 15193272 -174086282 + MLT1D LTR MaLR 370 456 -49 501 295 4 100 chr6 15195385 15195656 -174083898 + MIR SINE MIR 18 262 0 365 353 14 45 chr6 15196864 15197156 -174082398 - L2 LINE L2 -342 2972 2690 1135 270 42 15 chr6 15197661 15197994 -174081560 - MLT1I LTR MaLR -2 407 66 812 298 113 22 chr6 15198616 15199266 -174080288 + L2 LINE L2 2573 3311 -2 2142 106 0 13 chr6 15199711 15200012 -174079542 + AluSq SINE Alu 1 297 -16 220 306 0 0 chr6 15201009 15201071 -174078483 + MIR SINE MIR 190 251 -11 * 311 361 38 0 chr6 15201038 15201171 -174078383 - MIR SINE MIR -33 229 92 603 278 16 14 chr6 15201171 15201406 -174078148 - LTR33 LTR ERVL -2 519 278 283 221 0 29 chr6 15201717 15201821 -174077733 + CT-rich Low_complexity Low_complexity 4 104 0 317 293 54 54 chr6 15203232 15203379 -174076175 + MIR SINE MIR 36 147 -61 269 302 10 10 chr6 15203554 15203650 -174075904 - L2 LINE L2 -188 3084 2989 2533 84 0 0 chr6 15203909 15204220 -174075334 + AluSq SINE Alu 1 311 -2 1420 241 103 21 chr6 15204299 15204767 -174074787 + LTR33 LTR ERVL 7 512 -9 277 325 181 16 chr6 15204834 15205286 -174074268 - L2 LINE L2 -747 2567 2041 1017 178 70 37 chr6 15205914 15206171 -174073383 - L1MB2 LINE L1 0 6171 5907 513 221 0 0 chr6 15206175 15206279 -174073275 + Tigger7 DNA MER2_type 3 106 -599 730 127 0 51 chr6 15206290 15206408 -174073146 + FLAM_C SINE Alu 13 124 -19 562 269 0 0 chr6 15206411 15206530 -174073024 + Tigger7 DNA MER2_type 101 219 -486 563 140 35 53 chr6 15206531 15206563 -174072991 + Tigger7 DNA MER2_type 2476 2507 -80 2527 116 5 18 chr6 15206563 15206943 -174072611 + THE1C LTR MaLR 1 375 0 563 140 35 53 chr6 15206943 15207024 -174072530 + Tigger7 DNA MER2_type 2507 2587 0 508 200 42 58 chr6 15207024 15207144 -174072410 - L1MB3 LINE L1 -277 5906 5789 633 255 42 23 chr6 15208986 15209202 -174070352 + MIR SINE MIR 32 251 -11 413 284 148 6 chr6 15209273 15209442 -174070112 + MIR SINE MIR 51 243 -19 270 0 0 0 chr6 15209449 15209479 -174070075 + (TTA)n Simple_repeat Simple_repeat 3 32 0 207 0 0 0 chr6 15209604 15209627 -174069927 + (T)n Simple_repeat Simple_repeat 1 23 0 449 272 133 19 chr6 15210604 15210997 -174068557 + L1MC4a LINE L1 5176 5614 -507 307 284 99 67 chr6 15211010 15211323 -174068231 + L1MC4a LINE L1 5642 5964 -1844 351 60 0 0 chr6 15211426 15211476 -174068078 + (TG)n Simple_repeat Simple_repeat 1 50 0 1243 186 109 0 chr6 15212074 15212348 -174067206 + MER33 DNA MER1_type 1 304 -20 333 0 0 0 chr6 15213767 15213804 -174065750 + (CA)n Simple_repeat Simple_repeat 1 37 0 720 119 18 0 chr6 15214280 15214389 -174065165 - L1PA14 LINE L1 -522 5639 5529 3868 78 6 4 chr6 15214389 15214898 -174064656 + L1PA14 LINE L1 5642 6158 -3 348 288 51 0 chr6 15214941 15215059 -174064495 - MIR SINE MIR -29 233 110 262 180 82 16 chr6 15215069 15215130 -174064424 - MLT1I LTR MaLR -9 400 336 248 211 44 56 chr6 15215764 15215854 -174063700 - MIR SINE MIR -170 92 4 793 177 78 16 chr6 15216111 15216303 -174063251 - MER3 DNA MER1_type -4 205 2 2205 99 0 3 chr6 15216403 15216721 -174062833 + AluSg SINE Alu 1 317 0 391 161 49 37 chr6 15217479 15217560 -174061994 + MER103 DNA DNA 77 158 -8 4279 214 74 35 chr6 15218608 15219227 -174060327 + L1ME2 LINE L1 3915 4508 -1656 1835 159 0 7 chr6 15219227 15219510 -174060044 + AluJo SINE Alu 1 281 -31 4279 214 74 35 chr6 15219510 15221053 -174058501 + L1ME2 LINE L1 4508 6163 -1 372 285 64 29 chr6 15221321 15221493 -174058061 + MIR SINE MIR 14 191 -71 239 283 201 0 chr6 15222486 15222645 -174056909 + MIR SINE MIR 64 254 -8 2214 121 84 53 chr6 15222912 15223327 -174056227 - MSTA LTR MaLR 0 428 1 542 92 0 11 chr6 15223329 15223416 -174056138 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 2168 111 10 3 chr6 15225410 15225707 -174053847 - AluSx SINE Alu -13 299 1 2373 142 21 8 chr6 15225974 15226354 -174053200 - MER57A LTR ERV1 -18 385 1 2285 107 3 0 chr6 15226574 15226874 -174052680 + AluSx SINE Alu 1 301 -11 519 200 20 0 chr6 15226892 15226992 -174052562 + MIR3 SINE MIR 53 154 -54 4714 153 63 39 chr6 15227943 15228835 -174050719 - MER21A LTR ERV1 0 931 19 357 297 100 75 chr6 15228897 15228964 -174050590 - L3 LINE CR1 -1 1576 1512 601 174 92 76 chr6 15228964 15229028 -174050526 + MER5A DNA MER1_type 1 62 -127 2318 94 0 3 chr6 15229028 15229325 -174050229 + AluSg SINE Alu 15 310 0 601 174 92 76 chr6 15229325 15229444 -174050110 + MER5A DNA MER1_type 62 187 -2 357 297 100 75 chr6 15229444 15229615 -174049939 - L3 LINE CR1 -65 1512 1332 312 91 0 0 chr6 15230302 15230346 -174049208 + (GGA)n Simple_repeat Simple_repeat 1 44 0 216 254 232 43 chr6 15231723 15231861 -174047693 + MIR SINE MIR 20 183 -79 26 0 0 0 chr6 15231941 15231967 -174047587 + AT_rich Low_complexity Low_complexity 1 26 0 456 295 73 33 chr6 15232498 15232827 -174046727 + L1MCa LINE L1 1252 1593 -4833 * 586 286 79 10 chr6 15232824 15233114 -174046440 + L1MCa LINE L1 2801 3110 -3316 3014 279 76 48 chr6 15233262 15235703 -174043851 + L1MCa LINE L1 3408 5919 -531 975 207 38 114 chr6 15235856 15236110 -174043444 - MER39 LTR ERV1 -83 624 409 2527 93 0 0 chr6 15236110 15236423 -174043131 + AluSp SINE Alu 1 313 0 975 207 38 114 chr6 15236423 15236564 -174042990 - MER39 LTR ERV1 -298 409 259 852 260 73 74 chr6 15237067 15237544 -174042010 - MLT1L LTR MaLR 0 615 73 2091 110 32 0 chr6 15239017 15239299 -174040255 + AluSq SINE Alu 1 291 -22 466 138 11 23 chr6 15239322 15239409 -174040145 - L1MB8 LINE L1 0 6178 6093 551 218 21 21 chr6 15239421 15239563 -174039991 - L1MB4 LINE L1 -1 6179 6038 733 165 33 0 chr6 15239659 15239780 -174039774 + FLAM_C SINE Alu 2 126 -7 252 250 56 0 chr6 15239791 15239863 -174039691 - MER91A DNA MER1_type -92 104 29 1359 229 75 48 chr6 15240250 15240705 -174038849 - MLT1C LTR MaLR 0 467 1 29 0 0 0 chr6 15241472 15241501 -174038053 + AT_rich Low_complexity Low_complexity 1 29 0 549 228 85 76 chr6 15242116 15242327 -174037227 - MIR SINE MIR -3 259 47 180 0 0 0 chr6 15242829 15242849 -174036705 + (T)n Simple_repeat Simple_repeat 1 20 0 2314 159 62 154 chr6 15243319 15244116 -174035438 + LTR8A LTR ERV1 1 723 -4 205 314 71 0 chr6 15244414 15244484 -174035070 + L2 LINE L2 3146 3220 -52 198 333 109 29 chr6 15245332 15245506 -174034048 + L2 LINE L2 2397 2584 -730 1331 191 91 64 chr6 15245560 15245980 -174033574 - MER31B LTR ERV1 -29 437 7 283 219 27 55 chr6 15246207 15246280 -174033274 - L2 LINE L2 0 3313 3243 1120 265 98 14 chr6 15247345 15247783 -174031771 - LTR16C LTR ERVL 0 491 17 707 169 7 0 chr6 15248309 15248457 -174031097 + CT-rich Low_complexity Low_complexity 2 150 0 1023 256 157 34 chr6 15248863 15249551 -174030003 + L2 LINE L2 2542 3309 -4 186 265 0 0 chr6 15249912 15249980 -174029574 + GA-rich Low_complexity Low_complexity 4 71 0 212 141 28 70 chr6 15250594 15250607 -174028947 + A-rich Low_complexity Low_complexity 3 15 -55 1966 121 6 16 chr6 15250607 15250922 -174028632 + AluSx SINE Alu 1 312 0 212 141 28 70 chr6 15250922 15250979 -174028575 + A-rich Low_complexity Low_complexity 15 70 0 1664 168 43 45 chr6 15251523 15251898 -174027656 - MLT1A2 LTR MaLR 0 374 1 320 306 153 0 chr6 15253045 15253156 -174026398 + MIR3 SINE MIR 54 181 -27 189 0 0 0 chr6 15254727 15254748 -174024806 + (CA)n Simple_repeat Simple_repeat 2 22 0 405 0 0 0 chr6 15255048 15255093 -174024461 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 302 211 28 14 chr6 15255639 15255710 -174023844 + GA-rich Low_complexity Low_complexity 3 74 0 258 32 0 0 chr6 15255776 15255807 -174023747 + (TG)n Simple_repeat Simple_repeat 2 32 0 327 327 18 0 chr6 15255869 15255979 -174023575 + MER91A DNA MER1_type 60 171 -25 836 188 59 18 chr6 15256155 15256325 -174023229 + AluJo SINE Alu 120 296 -16 188 193 37 128 chr6 15257676 15257785 -174021769 - L2 LINE L2 -890 2424 2326 1170 213 67 59 chr6 15258319 15258690 -174020864 - MER21B LTR ERV1 -109 754 381 565 315 18 22 chr6 15258887 15259109 -174020445 - MER21B LTR ERV1 -483 380 160 * 713 274 28 29 chr6 15259092 15259400 -174020154 - MER21B LTR ERV1 -400 205 4 724 245 147 64 chr6 15259456 15259892 -174019662 + MLT1H LTR MaLR 78 549 0 330 277 118 73 chr6 15260306 15260620 -174018934 - MLT1J1 LTR MaLR -26 420 93 3027 61 3 13 chr6 15260731 15261122 -174018432 + L1PA6 LINE L1 5767 6153 -1 267 217 17 0 chr6 15262179 15262239 -174017315 + GA-rich Low_complexity Low_complexity 3 63 0 21 0 0 0 chr6 15262805 15262826 -174016728 + AT_rich Low_complexity Low_complexity 1 21 0 583 235 122 20 chr6 15263495 15263691 -174015863 + LTR33 LTR ERVL 1 216 -305 298 276 51 32 chr6 15263698 15263854 -174015700 + LTR33 LTR ERVL 363 521 0 2150 88 7 7 chr6 15263890 15264185 -174015369 - AluSg SINE Alu -15 295 1 449 264 66 8 chr6 15264186 15264307 -174015247 - MIR SINE MIR -19 243 116 180 254 32 32 chr6 15264305 15264368 -174015186 - MIR SINE MIR -37 225 163 * 276 77 0 0 chr6 15265300 15265339 -174014215 + (CAAAC)n Simple_repeat Simple_repeat 1 39 0 303 85 0 0 chr6 15265346 15265393 -174014161 + (CA)n Simple_repeat Simple_repeat 1 47 0 242 381 0 0 chr6 15265425 15265509 -174014045 + L2 LINE L2 3186 3269 -3 1881 145 16 3 chr6 15266089 15266393 -174013161 - L1M1 LINE L1 -6168 1397 1090 234 128 0 0 chr6 15267520 15267559 -174011995 + (CA)n Simple_repeat Simple_repeat 2 40 0 2106 116 0 0 chr6 15267944 15268238 -174011316 - AluSg SINE Alu -16 294 1 907 147 0 14 chr6 15268239 15268382 -174011172 - L1MC1 LINE L1 -9 6324 6184 3681 51 0 2 chr6 15268384 15268833 -174010721 - LTR7 LTR ERV1 -2 448 1 2612 74 45 13 chr6 15268833 15269213 -174010341 - HERVH LTR ERV1 0 7713 7322 1428 115 23 9 chr6 15269211 15269428 -174010126 - HERVH LTR ERV1 -1894 5819 5600 * 4504 136 1 1 chr6 15269429 15270091 -174009463 - HERVH LTR ERV1 -2564 5149 4488 3400 116 6 6 chr6 15270093 15270595 -174008959 - HERVH LTR ERV1 -3720 3993 3492 * 21095 80 61 43 chr6 15270585 15273818 -174005736 - HERVH LTR ERV1 -4423 3290 1 3724 40 7 2 chr6 15273818 15274266 -174005288 - LTR7 LTR ERV1 0 450 1 5829 156 21 4 chr6 15274266 15275452 -174004102 - L1MC1 LINE L1 -145 6188 4976 326 194 47 70 chr6 15275436 15275565 -174003989 - L1MC5 LINE L1 -30 7931 7806 * 290 315 139 9 chr6 15276069 15276177 -174003377 - MIR3 SINE MIR -6 202 81 2747 132 29 0 chr6 15279308 15279724 -173999830 + MSTA LTR MaLR 1 428 0 236 301 23 92 chr6 15279842 15280015 -173999539 - MER5B DNA MER1_type 0 178 18 236 254 0 56 chr6 15280232 15280303 -173999251 + L2 LINE L2 3243 3309 -4 277 333 82 22 chr6 15280399 15280582 -173998972 + MIR3 SINE MIR 5 198 -10 411 292 0 8 chr6 15282000 15282120 -173997434 + L2 LINE L2 3193 3311 -2 504 212 62 62 chr6 15283356 15283549 -173996005 - MLT1K LTR MaLR 0 588 396 431 327 22 63 chr6 15283624 15283893 -173995661 - MLT1K LTR MaLR -329 259 2 256 330 62 40 chr6 15285140 15285316 -173994238 - MIR SINE MIR -54 208 29 396 267 69 9 chr6 15285351 15285412 -173994142 - L2 LINE L2 0 3313 3257 441 0 0 0 chr6 15285412 15285461 -173994093 + (TA)n Simple_repeat Simple_repeat 2 50 0 396 267 69 9 chr6 15285461 15285515 -173994039 - L2 LINE L2 -56 3257 3191 249 247 104 26 chr6 15335892 15335969 -173943585 - MIR SINE MIR -94 114 32 2345 184 37 0 chr6 15336732 15337135 -173942419 - MER47B DNA MER2_type 0 418 1 229 355 0 0 chr6 15337805 15337881 -173941673 + L2 LINE L2 3186 3261 -11 190 308 62 77 chr6 15339095 15339225 -173940329 - L2 LINE L2 -10 3303 3176 2294 97 0 55 chr6 15339683 15340013 -173939541 - AluSx SINE Alu 0 312 1 303 259 155 17 chr6 15341099 15341215 -173938339 - L2 LINE L2 -3 3269 3138 2466 183 67 30 chr6 15341460 15341996 -173937558 + MER74A LTR ERVL 3 558 0 380 300 142 2 chr6 15343472 15343634 -173935920 - MIR SINE MIR -51 211 32 329 309 144 27 chr6 15343776 15344074 -173935480 + L1MC2 LINE L1 5265 5597 -567 1929 115 0 87 chr6 15344078 15344399 -173935155 - AluSx SINE Alu -19 293 1 424 287 39 17 chr6 15344721 15344902 -173934652 + LTR16A LTR ERVL 164 348 -102 332 239 45 60 chr6 15344968 15345102 -173934452 + Charlie7 DNA MER1_type 2478 2609 -3 2111 165 105 37 chr6 15345107 15345544 -173934010 + MLT1C LTR MaLR 1 467 0 262 290 110 25 chr6 15345563 15345763 -173933791 + L1MC2 LINE L1 5679 5895 -1913 2154 131 0 0 chr6 15345976 15346273 -173933281 + AluSg SINE Alu 1 297 -13 38 0 0 0 chr6 15346319 15346357 -173933197 + AT_rich Low_complexity Low_complexity 1 38 0 378 157 14 0 chr6 15346375 15346445 -173933109 + L1MC3 LINE L1 7524 7594 -191 976 161 75 5 chr6 15346445 15346631 -173932923 + L1MC2 LINE L1 6137 6335 -9 365 285 0 31 chr6 15346639 15346763 -173932791 - MER5A DNA MER1_type -32 146 30 279 307 117 0 chr6 15347403 15347517 -173932037 - L2 LINE L2 0 3272 3149 233 263 0 18 chr6 15348653 15348710 -173930844 - MER91A DNA MER1_type 0 196 141 225 262 59 45 chr6 15349269 15349423 -173930131 - MIR SINE MIR -80 182 27 302 325 107 37 chr6 15349696 15349939 -173929615 - MIR SINE MIR 0 262 3 377 261 115 32 chr6 15350055 15350212 -173929342 - MER112 DNA MER1_type -90 170 1 1493 223 14 28 chr6 15351023 15351435 -173928119 - MLT1A2 LTR MaLR -4 370 1 908 203 51 99 chr6 15353329 15353669 -173925885 - MLT1C LTR MaLR -1 466 168 1890 195 22 6 chr6 15353777 15354136 -173925418 - MLT1A1 LTR MaLR 0 365 1 434 253 18 15 chr6 15354429 15354569 -173924985 + MIR SINE MIR 17 143 -65 458 324 45 33 chr6 15355465 15355709 -173923845 - MIR SINE MIR -11 251 5 220 272 62 12 chr6 15355816 15355897 -173923657 - L2 LINE L2 -4 3268 3184 261 324 158 0 chr6 15356098 15356237 -173923317 + MIR3 SINE MIR 35 195 -13 204 40 0 0 chr6 15356741 15356766 -173922788 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 283 317 60 33 chr6 15356833 15357016 -173922538 - MIR SINE MIR -43 219 32 358 311 85 34 chr6 15357160 15357337 -173922217 - MER91A DNA MER1_type -3 193 8 7378 48 7 0 chr6 15357949 15359319 -173920235 - L1PA6 LINE L1 0 6154 4780 334 309 112 0 chr6 15359382 15359534 -173920020 - MIR SINE MIR -60 202 34 3158 164 6 8 chr6 15359643 15360167 -173919387 - LTR26B LTR ERV1 -8 523 1 201 224 0 0 chr6 15360921 15360979 -173918575 + CT-rich Low_complexity Low_complexity 1 58 0 1055 148 40 139 chr6 15361190 15361493 -173918061 + MER34B LTR ERV1 1 273 -292 1780 163 24 84 chr6 15361497 15361866 -173917688 + Tigger3(Golem) DNA MER2_type 2 3028 -1 1627 135 28 11 chr6 15361866 15362148 -173917406 + MER34B LTR ERV1 275 561 -4 224 321 155 0 chr6 15363408 15363595 -173915959 + MIR SINE MIR 47 262 0 250 316 171 0 chr6 15363639 15363756 -173915798 + L2 LINE L2 3136 3272 0 3160 149 25 39 chr6 15364733 15365150 -173914404 - MER34C LTR ERV1 -3 582 174 1625 171 12 50 chr6 15365150 15365471 -173914083 - AluJo SINE Alu -3 309 1 3160 149 25 39 chr6 15365471 15365643 -173913911 - MER34C LTR ERV1 -411 174 1 285 252 142 13 chr6 15365999 15366154 -173913400 + MIR SINE MIR 23 197 -65 1603 189 71 54 chr6 15366305 15366857 -173912697 + MER39 LTR ERV1 1 707 0 278 333 26 8 chr6 15366984 15367101 -173912453 + LTR67 LTR ERVL 432 550 -7 1394 201 61 75 chr6 15367109 15367632 -173911922 - MER39 LTR ERV1 -3 704 1 1721 153 134 0 chr6 15367786 15368093 -173911461 - MER7A DNA MER2_type 0 346 1 638 251 34 22 chr6 15368573 15368687 -173910867 + MER5A DNA MER1_type 9 127 -62 906 122 0 0 chr6 15368687 15368818 -173910736 + FLAM_C SINE Alu 2 132 -1 638 251 34 22 chr6 15368818 15368882 -173910672 + MER5A DNA MER1_type 127 189 0 4362 165 45 3 chr6 15370715 15371455 -173908099 - LTR39 LTR ERV1 -12 771 1 2418 169 61 33 chr6 15371839 15372361 -173907193 - MER34C LTR ERV1 -2 583 47 1918 107 0 30 chr6 15372432 15372695 -173906859 + AluSx SINE Alu 1 255 -57 422 176 44 14 chr6 15372715 15372881 -173906673 + LTR29 LTR ERV1 1 198 -424 1434 132 128 15 chr6 15372924 15373189 -173906365 + LTR29 LTR ERV1 305 599 -23 284 357 102 39 chr6 15373589 15373894 -173905660 - L2 LINE L2 -4 3268 2945 450 305 6 58 chr6 15374289 15374463 -173905091 - L2 LINE L2 -607 2707 2543 238 293 70 32 chr6 15374551 15374696 -173904858 + MIR3 SINE MIR 15 164 -62 282 301 78 10 chr6 15375093 15375196 -173904358 + MIR3 SINE MIR 71 180 -28 593 251 70 91 chr6 15375870 15376157 -173903397 + LTR16B LTR ERVL 24 304 -160 481 250 17 0 chr6 15376159 15376279 -173903275 + MLT2C1 LTR ERVL 1 122 -275 4411 158 4 4 chr6 15376280 15376989 -173902565 - MER50 LTR ERV1 -23 711 3 1497 177 45 4 chr6 15376993 15377259 -173902295 + MLT2C1 LTR ERVL 121 397 0 2110 107 3 27 chr6 15377263 15377563 -173901991 - AluSp SINE Alu -13 300 8 530 248 7 14 chr6 15377572 15377713 -173901841 + LTR16B LTR ERVL 302 441 -23 223 314 32 48 chr6 15378552 15378676 -173900878 - L2 LINE L2 0 3313 3192 1051 238 42 34 chr6 15379121 15379162 -173900392 - MLT2D LTR ERVL 0 414 375 414 0 0 0 chr6 15379162 15379208 -173900346 + (TG)n Simple_repeat Simple_repeat 1 46 0 252 0 0 0 chr6 15379207 15379235 -173900319 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 1051 238 42 34 chr6 15379208 15379458 -173900096 - MLT2D LTR ERVL -39 375 148 1786 181 89 66 chr6 15379475 15379990 -173899564 + MER34C LTR ERV1 51 577 -8 873 84 28 21 chr6 15379996 15380139 -173899415 - MLT2C2 LTR ERVL -314 150 7 1553 168 178 50 chr6 15380415 15380892 -173898662 - MER34C LTR ERV1 -2 583 46 750 292 14 52 chr6 15380920 15381286 -173898268 - L1ME4a LINE L1 -226 5895 5544 24 0 0 0 chr6 15381482 15381506 -173898048 + AT_rich Low_complexity Low_complexity 1 24 0 2119 117 70 6 chr6 15381867 15382209 -173897345 - MER34C LTR ERV1 -185 400 37 207 143 0 0 chr6 15384717 15384752 -173894802 + MIR SINE MIR 195 229 -33 981 56 14 7 chr6 15385117 15385259 -173894295 + (TTCC)n Simple_repeat Simple_repeat 3 145 0 3305 152 18 132 chr6 15385537 15386421 -173893133 - LTR39 LTR ERV1 0 783 1 476 214 141 81 chr6 15387848 15388096 -173891458 - LTR48B LTR ERV1 0 644 382 1174 66 0 7 chr6 15388114 15388265 -173891289 + AluY SINE Alu 158 307 -4 1012 169 159 53 chr6 15388316 15388636 -173890918 - MLT1A1 LTR MaLR -9 356 3 541 245 25 19 chr6 15388649 15388878 -173890676 - MER34 LTR ERV1 -371 273 1 1815 142 73 109 chr6 15389296 15389357 -173890197 - MER31B LTR ERV1 0 466 404 3694 81 28 14 chr6 15389357 15389863 -173889691 - LTR10D LTR ERV1 0 513 1 1815 142 73 109 chr6 15389863 15390280 -173889274 - MER31B LTR ERV1 -62 404 5 2295 89 7 0 chr6 15390280 15390572 -173888982 + AluY SINE Alu 1 294 -17 283 297 31 83 chr6 15390682 15390785 -173888769 - MIR3 SINE MIR -9 199 92 3738 184 49 36 chr6 15390785 15391557 -173887997 + LTR39 LTR ERV1 2 783 0 283 297 31 83 chr6 15391557 15391571 -173887983 - MIR3 SINE MIR -116 92 79 2836 180 12 108 chr6 15391571 15391739 -173887815 - LTR8 LTR ERV1 0 691 508 2301 111 0 6 chr6 15391739 15392054 -173887500 - AluSq SINE Alu 0 313 1 2836 180 12 108 chr6 15392054 15392650 -173886904 - LTR8 LTR ERV1 -183 508 1 283 297 31 83 chr6 15392650 15392723 -173886831 - MIR3 SINE MIR -129 79 18 243 256 128 53 chr6 15393967 15394100 -173885454 + MIR3 SINE MIR 11 153 -55 435 280 48 8 chr6 15394483 15394608 -173884946 + MIR SINE MIR 20 149 -113 1913 180 0 0 chr6 15394668 15394974 -173884580 - AluJo SINE Alu -4 308 3 200 313 83 0 chr6 15395396 15395492 -173884062 + MIR SINE MIR 146 249 -13 242 146 36 36 chr6 15395635 15395690 -173883864 + GA-rich Low_complexity Low_complexity 3 57 0 2249 170 113 18 chr6 15395931 15396196 -173883358 - MER101B LTR ERV1 -33 537 298 303 28 0 0 chr6 15396196 15396232 -173883322 + (TG)n Simple_repeat Simple_repeat 2 37 0 2249 170 113 18 chr6 15396232 15396455 -173883099 - MER101B LTR ERV1 -272 298 3 3060 151 80 16 chr6 15396667 15397435 -173882119 + MER21A LTR ERV1 1 931 0 358 316 79 19 chr6 15398155 15398370 -173881184 - L3b LINE CR1 -225 1358 1131 328 251 16 13 chr6 15398752 15398863 -173880691 + MIR3 SINE MIR 48 160 -48 1128 263 72 12 chr6 15400674 15400993 -173878561 - MER58B DNA MER1_type -3 338 1 247 238 90 82 chr6 15401041 15401163 -173878391 + L2 LINE L2 3150 3272 0 395 350 0 7 chr6 15401819 15401956 -173877598 - L2 LINE L2 0 3272 3137 320 325 58 0 chr6 15402836 15402956 -173876598 + MIR SINE MIR 81 207 -55 207 0 0 0 chr6 15404502 15404525 -173875029 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 239 310 39 54 chr6 15404693 15404740 -173874814 - MIR SINE MIR -99 163 117 234 0 0 0 chr6 15404740 15404766 -173874788 + (TTG)n Simple_repeat Simple_repeat 3 28 0 2309 72 0 0 chr6 15404766 15405045 -173874509 - AluY SINE Alu -32 279 1 239 310 39 54 chr6 15405045 15405125 -173874429 - MIR SINE MIR -143 119 37 1857 201 74 22 chr6 15405376 15405820 -173873734 - MLT1C LTR MaLR 0 467 1 247 239 0 0 chr6 15406075 15406121 -173873433 + L2 LINE L2 3141 3186 -86 207 0 0 0 chr6 15406323 15406346 -173873208 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 317 71 0 0 chr6 15406490 15406532 -173873022 - 5S rRNA rRNA -79 42 1 1620 174 46 3 chr6 15406671 15406953 -173872601 - AluJo SINE Alu -14 298 5 274 194 0 82 chr6 15407077 15407175 -173872379 + L1MC4 LINE L1 6614 6703 -1339 199 307 29 66 chr6 15407375 15407512 -173872042 - MER5B DNA MER1_type -29 149 18 269 249 260 28 chr6 15408050 15408231 -173871323 - L2 LINE L2 -72 3241 3019 455 267 110 20 chr6 15408281 15408413 -173871141 - MIR3 SINE MIR -28 180 32 1854 100 97 7 chr6 15408413 15408682 -173870872 + AluSg SINE Alu 1 293 -17 455 267 110 20 chr6 15408682 15408695 -173870859 - MIR3 SINE MIR -176 32 22 200 64 0 106 chr6 15409046 15409093 -173870461 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 208 287 11 32 chr6 15409215 15409309 -173870245 + CT-rich Low_complexity Low_complexity 5 96 0 25 0 0 0 chr6 15410336 15410361 -173869193 + AT_rich Low_complexity Low_complexity 1 25 0 863 135 26 26 chr6 15411336 15411447 -173868107 + MER3 DNA MER1_type 9 119 -43 315 0 0 0 chr6 15411447 15411482 -173868072 + (TC)n Simple_repeat Simple_repeat 2 36 0 207 0 0 0 chr6 15411481 15411504 -173868050 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 863 135 26 26 chr6 15411482 15411504 -173868050 + MER3 DNA MER1_type 119 140 -22 2524 81 3 0 chr6 15411504 15411814 -173867740 - AluSx SINE Alu -1 311 1 863 135 26 26 chr6 15411814 15411857 -173867697 + MER3 DNA MER1_type 139 164 -45 274 305 19 57 chr6 15412246 15412351 -173867203 + MER5A DNA MER1_type 62 167 -16 231 287 157 0 chr6 15412819 15412927 -173866627 - MIR SINE MIR -73 189 65 2383 231 33 29 chr6 15413194 15413887 -173865667 + L1MC4 LINE L1 7344 8039 -3 644 267 93 13 chr6 15413923 15414159 -173865395 - MIR SINE MIR 0 262 8 348 336 43 36 chr6 15414332 15414472 -173865082 + L2 LINE L2 3132 3272 0 407 290 186 16 chr6 15414482 15414734 -173864820 - L3 LINE CR1 -301 1276 982 2350 243 77 49 chr6 15414778 15415568 -173863986 + HAL1 LINE L1 1 812 -1695 1800 171 96 0 chr6 15415584 15415953 -173863601 - L1MB4 LINE L1 0 6180 5776 207 0 0 0 chr6 15416156 15416179 -173863375 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1678 148 25 14 chr6 15416182 15416460 -173863094 - AluSx SINE Alu -31 281 1 1013 156 6 17 chr6 15416491 15416664 -173862890 + FRAM SINE Alu 1 171 -5 305 263 79 0 chr6 15417072 15417148 -173862406 - L2 LINE L2 -1 3271 3190 1923 143 65 25 chr6 15417854 15418210 -173861344 + THE1C LTR MaLR 6 375 0 273 318 64 18 chr6 15419001 15419111 -173860443 + L2 LINE L2 3158 3272 0 224 276 41 51 chr6 15419634 15419732 -173859822 + L2 LINE L2 3189 3285 -28 1692 179 7 0 chr6 15419754 15420033 -173859521 - AluJb SINE Alu -31 281 1 1020 215 106 7 chr6 15420064 15420348 -173859206 - L1M4 LINE L1 -1413 4733 4422 830 219 24 0 chr6 15420392 15420561 -173858993 + MSTD LTR MaLR 1 173 -223 380 310 42 38 chr6 15420569 15420782 -173858772 - L1M4 LINE L1 -1873 4273 4060 544 200 82 0 chr6 15420790 15420925 -173858629 - L1M4 LINE L1 -2157 3989 3844 970 188 0 0 chr6 15420926 15421086 -173858468 - AluSg/x SINE Alu -14 298 139 2985 251 21 20 chr6 15421092 15421324 -173858230 - L1M4 LINE L1 -2303 3843 3613 2119 103 0 7 chr6 15421324 15421649 -173857905 + AluSg SINE Alu 1 323 0 2985 251 21 20 chr6 15421649 15422352 -173857202 - L1M4 LINE L1 -2533 3613 2905 886 229 22 6 chr6 15422671 15422850 -173856704 - MER5A DNA MER1_type -6 183 2 778 194 8 0 chr6 15423416 15423545 -173856009 + FLAM_A SINE Alu 3 132 -1 2208 94 23 10 chr6 15424735 15425043 -173854511 + AluSx SINE Alu 1 312 0 24 0 0 0 chr6 15426113 15426137 -173853417 + AT_rich Low_complexity Low_complexity 1 24 0 3521 157 5 11 chr6 15426138 15426712 -173852842 - L1PB4 LINE L1 -2 6154 5584 360 43 0 0 chr6 15426973 15427019 -173852535 + (CA)n Simple_repeat Simple_repeat 2 47 0 192 125 0 0 chr6 15427744 15427776 -173851778 + (T)n Simple_repeat Simple_repeat 1 32 0 2128 137 0 0 chr6 15427851 15428158 -173851396 + AluSx SINE Alu 1 307 -5 1450 209 43 55 chr6 15429448 15429793 -173849761 + MER58B DNA MER1_type 1 341 0 23 86 0 0 chr6 15429929 15429987 -173849567 + AT_rich Low_complexity Low_complexity 1 58 0 823 74 56 0 chr6 15430043 15430151 -173849403 + AluSc SINE Alu 1 114 -195 2069 260 87 33 chr6 15430154 15430727 -173848827 - HERV16 LTR ERVL -2669 2327 1706 2634 132 3 6 chr6 15430727 15431092 -173848462 + THE1B LTR MaLR 1 364 0 2069 260 87 33 chr6 15431092 15431240 -173848314 - HERV16 LTR ERVL -3290 1706 1567 3404 306 43 28 chr6 15431302 15432658 -173846896 - HERV16 LTR ERVL -3581 1415 39 1746 211 64 10 chr6 15432677 15433084 -173846470 - L1MB2 LINE L1 -2 6169 5741 268 331 92 11 chr6 15433171 15433455 -173846099 - LTR16A LTR ERVL -84 366 60 5263 87 10 9 chr6 15433586 15434267 -173845287 - L1PA11 LINE L1 -1 6173 5492 236 299 0 124 chr6 15435768 15435905 -173843649 - L3 LINE CR1 -65 1512 1393 2246 103 3 3 chr6 15436131 15436432 -173843122 - AluSg SINE Alu -9 301 1 446 257 47 29 chr6 15437207 15437387 -173842167 + L1ME LINE L1 5579 5750 -371 1502 81 0 0 chr6 15437432 15437618 -173841936 + L1PA8 LINE L1 5979 6164 -8 365 183 0 0 chr6 15437909 15437969 -173841585 - MIR3 SINE MIR -42 166 107 303 326 133 0 chr6 15439795 15439976 -173839578 - MIR SINE MIR -13 249 45 491 287 41 83 chr6 15440660 15440971 -173838583 + Charlie8 DNA MER1_type 38 323 -2094 2122 131 3 0 chr6 15440971 15441268 -173838286 + AluSx SINE Alu 1 298 -14 491 287 41 83 chr6 15441268 15441440 -173838114 + Charlie8 DNA MER1_type 323 501 -1916 242 140 140 0 chr6 15441591 15441648 -173837906 - MER5A DNA MER1_type -115 74 10 1097 221 0 35 chr6 15441649 15441880 -173837674 - MER58A DNA MER1_type 0 224 2 3591 111 38 30 chr6 15441886 15442411 -173837143 + MER1A DNA MER1_type 1 529 0 350 279 116 52 chr6 15442460 15442693 -173836861 - LTR16C LTR ERVL 0 491 244 352 259 80 9 chr6 15443204 15443316 -173836238 - MIR SINE MIR -59 203 84 1802 168 0 19 chr6 15443320 15443630 -173835924 - AluJb SINE Alu -8 304 1 363 44 0 0 chr6 15443771 15443816 -173835738 + (TTCTCC)n Simple_repeat Simple_repeat 5 49 0 2086 120 7 0 chr6 15443817 15444100 -173835454 - AluSp SINE Alu -28 285 1 369 240 0 0 chr6 15445120 15445195 -173834359 + MIR SINE MIR 63 137 -71 381 247 10 21 chr6 15445196 15445293 -173834261 + Charlie7 DNA MER1_type 1 96 -2516 * 403 237 53 24 chr6 15445279 15445448 -173834106 + Charlie7 DNA MER1_type 2439 2612 0 281 372 36 29 chr6 15446565 15446702 -173832852 + L2 LINE L2 3134 3271 -1 339 276 74 36 chr6 15446846 15447121 -173832433 + L1MC/D LINE L1 5247 5533 -631 909 200 24 6 chr6 15447216 15447386 -173832168 + MER105 DNA DNA 1 173 -31 528 213 0 0 chr6 15447384 15447478 -173832076 - Tigger7 DNA MER2_type -611 94 1 * 43 92 0 0 chr6 15447478 15447598 -173831956 + AT_rich Low_complexity Low_complexity 1 120 0 500 281 133 3 chr6 15448050 15448261 -173831293 + L1MC/D LINE L1 5572 5815 -345 * 676 252 72 43 chr6 15448245 15448468 -173831086 + MIR SINE MIR 8 236 -26 1565 109 41 5 chr6 15448593 15448814 -173830740 + MER30 DNA MER1_type 2 230 0 279 287 64 75 chr6 15449035 15449223 -173830331 + MIR SINE MIR 18 203 -59 * 782 216 52 39 chr6 15449222 15449300 -173830254 - MIR SINE MIR -26 236 160 1868 224 42 11 chr6 15449300 15449750 -173829804 + MLT1C LTR MaLR 4 467 0 782 216 52 39 chr6 15449750 15449902 -173829652 - MIR SINE MIR -102 160 3 270 0 0 0 chr6 15450494 15450524 -173829030 + (TC)n Simple_repeat Simple_repeat 1 30 0 525 281 36 10 chr6 15451253 15451445 -173828109 - MIR SINE MIR -13 249 53 1222 204 0 9 chr6 15451772 15451993 -173827561 + MER20 DNA MER1_type 1 219 0 336 313 38 0 chr6 15452458 15452589 -173826965 + MIR SINE MIR 106 241 -21 212 349 45 15 chr6 15452827 15452959 -173826595 + MIR SINE MIR 56 191 -71 189 147 0 0 chr6 15452959 15452993 -173826561 + (ATG)n Simple_repeat Simple_repeat 2 35 0 238 206 55 27 chr6 15454262 15454335 -173825219 + L2 LINE L2 3197 3271 -1 2247 129 7 45 chr6 15455693 15456096 -173823458 - MLT1B LTR MaLR -2 388 1 536 170 104 22 chr6 15457615 15457750 -173821804 - MLT1H LTR MaLR -8 541 396 562 237 175 65 chr6 15458813 15459214 -173820340 - MLT1H LTR MaLR -9 540 96 1468 207 70 6 chr6 15459732 15460075 -173819479 + MLT1A1 LTR MaLR 1 365 0 1009 196 28 0 chr6 15460195 15460374 -173819180 - MER20 DNA MER1_type 0 219 36 775 312 87 25 chr6 15461110 15461626 -173817928 + L1MC4a LINE L1 5386 5933 -1875 270 0 0 0 chr6 15461781 15461811 -173817743 + (T)n Simple_repeat Simple_repeat 1 30 0 2048 104 0 4 chr6 15463638 15463907 -173815647 - AluSx SINE Alu -10 302 35 567 219 116 30 chr6 15464013 15464177 -173815377 + MER45A DNA AcHobo 1 178 0 180 0 0 0 chr6 15464233 15464253 -173815301 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1868 144 4 7 chr6 15464255 15464532 -173815022 - AluJb SINE Alu -20 292 17 28 0 0 0 chr6 15464567 15464595 -173814959 + AT_rich Low_complexity Low_complexity 1 28 0 2157 102 3 3 chr6 15465292 15465575 -173813979 + AluSq SINE Alu 14 296 -17 1253 244 44 60 chr6 15465600 15466121 -173813433 - HAL1 LINE L1 0 2507 1995 1389 214 126 10 chr6 15466157 15466563 -173812991 - HAL1 LINE L1 -589 1918 1466 603 273 34 61 chr6 15466565 15466697 -173812857 - L1MDa LINE L1 -2605 3935 3801 2364 74 20 3 chr6 15466697 15466995 -173812559 - AluSg SINE Alu -7 303 1 603 273 34 61 chr6 15466995 15467159 -173812395 - L1MDa LINE L1 -2739 3801 3647 770 81 9 0 chr6 15467161 15467180 -173812374 + (TTCCC)n Simple_repeat Simple_repeat 1 131 0 770 81 9 0 chr6 15467180 15467291 -173812263 + (TTCCC)n Simple_repeat Simple_repeat 5 116 0 2088 144 0 7 chr6 15467350 15467656 -173811898 - AluSx SINE Alu -8 304 1 4079 207 55 7 chr6 15467663 15468761 -173810793 - L1MDa LINE L1 -2848 3692 2543 2096 270 69 4 chr6 15468756 15469305 -173810249 - L1MDa LINE L1 -5901 639 55 * 390 265 90 41 chr6 15469320 15469565 -173809989 - L2 LINE L2 -854 2460 2204 255 257 157 81 chr6 15469591 15469852 -173809702 - HAL1 LINE L1 -2219 288 8 1064 142 7 0 chr6 15470137 15470292 -173809262 + FRAM SINE Alu 1 154 -22 1583 147 29 111 chr6 15470302 15470682 -173808872 + MLT1B LTR MaLR 33 381 -9 2896 13 0 0 chr6 15471676 15471985 -173807569 + AluYb8 SINE Alu 1 309 -9 2332 193 80 12 chr6 15472449 15472894 -173806660 + MLT2B1 LTR ERVL 1 483 -37 222 37 0 0 chr6 15472894 15472921 -173806633 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 2332 193 80 12 chr6 15472921 15472962 -173806592 + MLT2B1 LTR ERVL 483 520 0 1989 105 7 17 chr6 15473553 15473849 -173805705 - AluSc SINE Alu 0 309 17 1170 180 86 23 chr6 15473870 15474126 -173805428 - MLT1B LTR MaLR -117 273 2 226 365 47 7 chr6 15474518 15474666 -173804888 - MIR SINE MIR -108 154 1 1279 203 8 23 chr6 15474708 15474974 -173804580 + MLT2B1 LTR ERVL 1 262 -258 314 133 0 0 chr6 15474978 15475023 -173804531 + MLT2B1 LTR ERVL 415 459 -61 2625 181 22 52 chr6 15475244 15475561 -173803993 + MER44D DNA MER2_type 14 363 -2124 1746 161 11 7 chr6 15475561 15475846 -173803708 + AluJo SINE Alu 1 286 -26 2625 181 22 52 chr6 15475846 15476082 -173803472 + MER44D DNA MER2_type 363 605 0 2640 44 0 0 chr6 15476143 15476440 -173803114 + AluY SINE Alu 1 297 -14 311 237 103 0 chr6 15480471 15480568 -173798986 - MIR SINE MIR -40 222 116 683 106 0 29 chr6 15480823 15480927 -173798627 + AluSg SINE Alu 2 102 -208 180 0 0 0 chr6 15482110 15482130 -173797424 + (T)n Simple_repeat Simple_repeat 1 20 0 1936 218 102 20 chr6 15482333 15482834 -173796720 + MLT1F LTR MaLR 1 542 0 1705 167 12 86 chr6 15486667 15487086 -173792468 - MLT1B LTR MaLR 0 390 3 1359 194 37 23 chr6 15487810 15488109 -173791445 - AluJo SINE Alu -3 309 7 296 250 170 0 chr6 15488370 15488470 -173791084 - L2 LINE L2 0 3313 3197 267 324 113 11 chr6 15488581 15488766 -173790788 - L2 LINE L2 -559 2755 2552 1080 187 35 5 chr6 15489127 15489330 -173790224 - MER3 DNA MER1_type 0 209 1 670 177 8 0 chr6 15490463 15490587 -173788967 + MIR SINE MIR 32 156 -106 3851 111 4 93 chr6 15490666 15490802 -173788752 - MER39B LTR ERV1 -28 625 478 2326 75 0 7 chr6 15490802 15491096 -173788458 - AluSc SINE Alu -17 292 1 3851 111 4 93 chr6 15491096 15491578 -173787976 - MER39B LTR ERV1 -175 478 71 2100 113 31 0 chr6 15491578 15491870 -173787684 - AluSx SINE Alu -11 301 1 3851 111 4 93 chr6 15491870 15491936 -173787618 - MER39B LTR ERV1 -582 71 1 581 260 80 92 chr6 15492000 15492250 -173787304 + MIR SINE MIR 1 247 -15 240 35 0 0 chr6 15492262 15492291 -173787263 + (TTA)n Simple_repeat Simple_repeat 3 31 0 1959 176 39 53 chr6 15492796 15493263 -173786291 + MER88 LTR ERVL 5 464 0 1931 131 3 33 chr6 15495058 15495363 -173784191 - AluSx SINE Alu -16 296 1 418 215 43 0 chr6 15496157 15496250 -173783304 + MIR SINE MIR 45 141 -67 1982 143 0 22 chr6 15496291 15496606 -173782948 + AluJo SINE Alu 1 308 -4 21 0 0 0 chr6 15496990 15497011 -173782543 + AT_rich Low_complexity Low_complexity 1 21 0 801 31 0 0 chr6 15497049 15497145 -173782409 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 2012 97 15 4 chr6 15497179 15497447 -173782107 - AluY SINE Alu -19 292 22 277 290 93 9 chr6 15497741 15497848 -173781706 + MIR SINE MIR 32 147 -115 216 0 0 0 chr6 15497853 15497877 -173781677 + (A)n Simple_repeat Simple_repeat 1 24 0 3534 242 150 22 chr6 15498212 15499535 -173780019 + L1MEc LINE L1 12 1503 -4893 1923 145 0 7 chr6 15499562 15499852 -173779702 + AluSx SINE Alu 18 305 -7 3868 263 103 28 chr6 15499853 15501483 -173778071 + L1M4 LINE L1 2965 4742 -1404 2206 116 7 0 chr6 15501483 15501793 -173777761 + AluSx SINE Alu 1 312 0 3868 263 103 28 chr6 15501793 15501947 -173777607 + L1M4 LINE L1 4742 4883 -1263 319 260 0 0 chr6 15501962 15502039 -173777515 + L1ME3A LINE L1 6027 6103 -67 637 286 15 10 chr6 15502509 15502708 -173776846 - MIR SINE MIR -3 259 60 3721 146 29 0 chr6 15502735 15503319 -173776235 - LTR26 LTR ERV1 -2 601 1 477 0 0 0 chr6 15503680 15503733 -173775821 + (CA)n Simple_repeat Simple_repeat 2 54 0 253 238 150 20 chr6 15504170 15504317 -173775237 - L1ME4a LINE L1 -12 6109 5944 3848 160 54 28 chr6 15504562 15504594 -173774960 - L1MB4 LINE L1 -16 6164 6134 2090 149 7 0 chr6 15504594 15504903 -173774651 - AluJb SINE Alu -1 311 1 3848 160 54 28 chr6 15504903 15505584 -173773970 - L1MB4 LINE L1 -46 6134 5143 553 308 27 48 chr6 15505584 15505918 -173773636 - L1ME4a LINE L1 -227 5894 5381 909 165 74 0 chr6 15506621 15506797 -173772757 - MER5A DNA MER1_type 0 189 1 7115 184 39 98 chr6 15506943 15508809 -173770745 - MER52A LTR ERV1 0 1755 1 24 0 0 0 chr6 15509560 15509584 -173769970 + AT_rich Low_complexity Low_complexity 1 24 0 45294 33 1 3 chr6 15509584 15515731 -173763823 - L1PA3 LINE L1 0 6155 22 295 231 85 50 chr6 15515853 15515992 -173763562 + LTR45 LTR ERV1 390 783 0 324 201 103 121 chr6 15516045 15516219 -173763335 + MLT1H LTR MaLR 130 300 -249 245 360 44 0 chr6 15517667 15517781 -173761773 - L2 LINE L2 -5 3308 3190 272 294 42 0 chr6 15517864 15517983 -173761571 + MIR SINE MIR 41 164 -98 1148 173 28 14 chr6 15519208 15519422 -173760132 - MER58A DNA MER1_type -2 222 6 303 335 32 32 chr6 15519791 15519949 -173759605 - HAL1 LINE L1 -1241 1266 1109 613 228 0 0 chr6 15519999 15520134 -173759420 - FLAM_A SINE Alu 0 137 3 602 228 117 6 chr6 15520170 15520332 -173759222 + MIR SINE MIR 13 192 -70 2388 95 0 0 chr6 15521397 15521691 -173757863 + AluSg SINE Alu 1 294 -16 312 171 134 12 chr6 15521760 15521842 -173757712 - L1ME3A LINE L1 0 6170 6079 217 281 122 0 chr6 15521935 15522017 -173757537 - L3 LINE CR1 -200 1377 1286 606 189 117 0 chr6 15522058 15522169 -173757385 + FLAM_A SINE Alu 1 124 -9 207 0 0 0 chr6 15522171 15522194 -173757360 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 213 200 0 0 chr6 15523095 15523129 -173756425 + CT-rich Low_complexity Low_complexity 1 35 0 2506 124 8 3 chr6 15523129 15523491 -173756063 - THE1B LTR MaLR 0 364 1 2451 181 24 33 chr6 15523920 15524411 -173755143 - MER110 LTR ERV1 -4 487 1 2833 165 16 42 chr6 15524988 15525504 -173754050 - MER89 LTR ERV1 0 559 58 2298 117 3 0 chr6 15525504 15525802 -173753752 - AluSp SINE Alu -14 299 1 2833 165 16 42 chr6 15525802 15525855 -173753699 - MER89 LTR ERV1 -501 58 5 5516 167 12 3 chr6 15526207 15527100 -173752454 + MER54A LTR ERVL 1 901 0 309 242 30 20 chr6 15528127 15528226 -173751328 + GA-rich Low_complexity Low_complexity 6 105 0 194 209 0 0 chr6 15528297 15528340 -173751214 + L2 LINE L2 3270 3312 -1 2776 124 29 9 chr6 15528622 15529042 -173750512 + MSTA LTR MaLR 1 428 0 534 346 75 16 chr6 15529179 15529563 -173749991 + L2 LINE L2 2552 2958 -356 578 279 5 30 chr6 15529748 15529945 -173749609 - LTR33 LTR ERVL -3 518 327 421 283 27 59 chr6 15530000 15530151 -173749403 - LTR33 LTR ERVL -319 202 57 1472 214 65 89 chr6 15530151 15530703 -173748851 - MER34 LTR ERV1 0 542 4 421 283 27 59 chr6 15530703 15530738 -173748816 - LTR33 LTR ERVL -464 57 22 328 326 20 0 chr6 15530970 15531068 -173748486 - MIR3 SINE MIR -18 190 91 255 125 0 0 chr6 15531609 15531649 -173747905 + (CTG)n Simple_repeat Simple_repeat 1 40 0 204 376 83 0 chr6 15531745 15531854 -173747700 + L2 LINE L2 3111 3228 -44 213 65 0 0 chr6 15531876 15531907 -173747647 + (A)n Simple_repeat Simple_repeat 1 31 0 2561 68 0 3 chr6 15531952 15532261 -173747293 - AluY SINE Alu -3 308 1 362 287 33 16 chr6 15532433 15532555 -173746999 + MIR3 SINE MIR 70 193 -15 207 100 0 0 chr6 15532762 15532792 -173746762 + (A)n Simple_repeat Simple_repeat 1 30 0 472 317 12 30 chr6 15533393 15533557 -173745997 - MLT1J2 LTR MaLR 0 450 290 1184 182 47 130 chr6 15533557 15533942 -173745612 + MLT1A1 LTR MaLR 1 353 -12 234 216 20 0 chr6 15533949 15534000 -173745554 - MLT1J2 LTR MaLR -154 296 245 362 306 28 28 chr6 15534753 15534897 -173744657 - MIR3 SINE MIR -55 153 10 2058 145 134 8 chr6 15535110 15535490 -173744064 - MSTA LTR MaLR 0 428 1 2878 252 98 24 chr6 15535546 15536149 -173743405 + L1ME3A LINE L1 4385 4942 -1228 1033 201 121 0 chr6 15536149 15536348 -173743206 - MER58A DNA MER1_type -1 223 1 2878 252 98 24 chr6 15536348 15537422 -173742132 + L1ME3A LINE L1 4942 6165 -5 269 348 28 7 chr6 15538288 15538429 -173741125 + MIR SINE MIR 20 163 -99 225 94 0 0 chr6 15538446 15538478 -173741076 + (GGA)n Simple_repeat Simple_repeat 2 33 0 821 275 4 26 chr6 15538493 15538726 -173740828 - MIR SINE MIR -21 241 14 232 139 0 0 chr6 15540903 15540939 -173738615 - LTR16A1 LTR ERVL 0 457 422 1533 187 35 74 chr6 15541373 15541779 -173737775 + MLT1B LTR MaLR 1 390 0 1765 161 10 24 chr6 15543513 15543804 -173735750 + AluJo SINE Alu 1 287 -25 188 215 112 65 chr6 15544563 15544670 -173734884 + MIR SINE MIR 35 146 -62 1470 168 80 8 chr6 15546334 15546596 -173732958 + AluJb SINE Alu 7 287 -25 309 26 0 0 chr6 15546597 15546635 -173732919 + (CA)n Simple_repeat Simple_repeat 2 39 0 474 18 0 0 chr6 15546635 15546690 -173732864 + (TA)n Simple_repeat Simple_repeat 1 55 0 191 330 33 11 chr6 15546729 15546820 -173732734 - L2 LINE L2 0 3272 3180 651 152 0 0 chr6 15546835 15546947 -173732607 + (TAGA)n Simple_repeat Simple_repeat 3 114 0 848 215 130 93 chr6 15547059 15547598 -173731956 - MER34B LTR ERV1 -4 561 3 764 217 0 12 chr6 15547915 15548081 -173731473 + MLT2C2 LTR ERVL 1 164 -300 1978 202 33 3 chr6 15548082 15548449 -173731105 + MLT1C-int LTR MaLR 966 1343 -28 2128 161 75 47 chr6 15548464 15548657 -173730897 + MLT1C LTR MaLR 1 187 -280 2154 138 0 6 chr6 15548657 15548968 -173730586 + AluSx SINE Alu 1 309 -3 2128 161 75 47 chr6 15548968 15549226 -173730328 + MLT1C LTR MaLR 187 465 -2 358 319 23 24 chr6 15549787 15549929 -173729625 + MIR SINE MIR 34 175 -60 502 292 12 6 chr6 15550131 15550299 -173729255 - MER69A DNA AcHobo 0 177 9 1228 218 80 33 chr6 15550700 15551159 -173728395 + MER39 LTR ERV1 1 701 -6 1251 176 110 33 chr6 15551295 15551596 -173727958 - MER46C DNA MER2_type -1 337 14 279 187 67 27 chr6 15552237 15552312 -173727242 - LTR48 LTR ERV1 -37 750 673 1507 160 100 21 chr6 15552361 15552692 -173726862 - MER46B DNA MER2_type 0 236 5 312 190 20 10 chr6 15552958 15553058 -173726496 + (TA)n Simple_repeat Simple_repeat 1 101 0 180 0 0 0 chr6 15554851 15554871 -173724683 + (A)n Simple_repeat Simple_repeat 1 20 0 1754 153 69 53 chr6 15555654 15556033 -173723521 + MLT1B LTR MaLR 6 390 0 2290 187 118 14 chr6 15556056 15556563 -173722991 + MER90 LTR ERV1 3 562 -13 30947 169 34 9 chr6 15557012 15561164 -173718390 - ERVL LTR ERVL -338 5426 1382 2434 164 31 2 chr6 15561164 15561580 -173717974 - MSTB1 LTR MaLR -4 428 1 30947 169 34 9 chr6 15561580 15562685 -173716869 - ERVL LTR ERVL -4382 1382 31 1754 173 0 37 chr6 15562685 15563009 -173716545 - AluJb SINE Alu 0 312 1 30947 169 34 9 chr6 15563009 15563029 -173716525 - ERVL LTR ERVL -5733 31 13 483 162 67 0 chr6 15563049 15563154 -173716400 + L1MB4 LINE L1 6069 6180 0 222 37 0 0 chr6 15564501 15564528 -173715026 + (GA)n Simple_repeat Simple_repeat 1 27 0 1955 111 0 25 chr6 15564528 15564671 -173714883 - AluSx SINE Alu -39 273 139 2069 113 20 10 chr6 15564671 15564971 -173714583 - AluSx SINE Alu -9 303 1 1955 111 0 25 chr6 15564971 15565107 -173714447 - AluSx SINE Alu -173 139 1 2380 189 43 15 chr6 15565223 15565756 -173713798 - L1MB5 LINE L1 0 6174 5627 853 287 42 48 chr6 15566093 15566427 -173713127 + LTR16C LTR ERVL 58 389 -102 2243 141 17 0 chr6 15566497 15566859 -173712695 + MLT1B LTR MaLR 23 390 0 437 132 15 0 chr6 15566859 15566927 -173712627 + LTR16C LTR ERVL 421 489 -2 248 188 188 0 chr6 15566946 15567031 -173712523 - L1M4 LINE L1 -3097 3049 2949 309 258 67 8 chr6 15567158 15567278 -173712276 - MLT1I LTR MaLR -227 182 56 543 289 77 38 chr6 15567290 15567577 -173711977 - L1ME LINE L1 -462 5700 5403 1734 103 25 0 chr6 15567589 15567831 -173711723 - AluSc SINE Alu -3 306 59 388 237 53 24 chr6 15667906 15668075 -173611479 - Charlie7 DNA MER1_type 0 2612 2439 379 247 10 21 chr6 15668061 15668158 -173611396 - Charlie7 DNA MER1_type -2516 96 1 * 343 240 0 0 chr6 15668159 15668234 -173611320 - MIR SINE MIR -71 137 63 2104 120 7 0 chr6 15669254 15669537 -173610017 + AluSp SINE Alu 1 285 -28 363 44 0 0 chr6 15669538 15669583 -173609971 + (GGAGAA)n Simple_repeat Simple_repeat 5 49 0 1822 168 0 19 chr6 15669724 15670034 -173609520 + AluJb SINE Alu 1 304 -8 322 259 80 9 chr6 15670038 15670150 -173609404 + MIR SINE MIR 84 203 -59 355 279 116 52 chr6 15670661 15670894 -173608660 + LTR16C LTR ERVL 244 491 0 3594 112 38 30 chr6 15670943 15671468 -173608086 - MER1A DNA MER1_type 0 529 1 1035 221 0 35 chr6 15671474 15671705 -173607849 + MER58A DNA MER1_type 2 224 0 222 140 140 0 chr6 15671706 15671763 -173607791 + MER5A DNA MER1_type 10 74 -115 483 287 41 83 chr6 15671914 15672086 -173607468 - Charlie8 DNA MER1_type -1916 501 323 2137 131 3 0 chr6 15672086 15672383 -173607171 - AluSx SINE Alu -14 298 1 483 287 41 83 chr6 15672383 15672694 -173606860 - Charlie8 DNA MER1_type -2094 323 38 246 316 79 0 chr6 15673378 15673530 -173606024 + MIR SINE MIR 45 208 -54 343 183 0 0 chr6 15675385 15675445 -173604109 + MIR3 SINE MIR 107 166 -42 1434 81 0 0 chr6 15675736 15675922 -173603632 - L1PA8 LINE L1 -8 6164 5979 434 257 47 29 chr6 15675967 15676147 -173603407 - L1MC/D LINE L1 -371 5750 5579 2278 100 3 3 chr6 15676922 15677223 -173602331 + AluSg SINE Alu 1 301 -9 200 299 0 124 chr6 15677449 15677586 -173601968 + L3 LINE CR1 1393 1512 -65 5018 87 10 9 chr6 15679087 15679768 -173599786 + L1PA11 LINE L1 5492 6173 -1 284 331 92 11 chr6 15679899 15680183 -173599371 + LTR16A LTR ERVL 60 366 -84 1723 211 64 10 chr6 15680270 15680677 -173598877 + L1MB2 LINE L1 5741 6169 -2 3397 307 43 28 chr6 15680696 15682052 -173597502 + HERV16 LTR ERVL 39 1415 -3581 2504 132 3 6 chr6 15682262 15682627 -173596927 - THE1B LTR MaLR 0 364 1 1611 270 69 15 chr6 15682739 15683262 -173596292 + HERV16 LTR ERVL 1841 2391 -2605 367 329 10 13 chr6 15683396 15683689 -173595865 + MERVL LTR ERVL 4731 5097 -667 436 328 90 4 chr6 15683902 15684170 -173595384 + LTR16A LTR ERVL 148 438 -12 824 176 0 0 chr6 15684328 15684453 -173595101 + FLAM_C SINE Alu 1 125 -18 2271 109 0 16 chr6 15685017 15685329 -173594225 + AluSc SINE Alu 1 307 -2 180 0 0 0 chr6 15685923 15685943 -173593611 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 343 262 113 21 chr6 15685967 15686108 -173593446 - MER5B DNA MER1_type -7 171 18 771 307 96 54 chr6 15686374 15686947 -173592607 + L3 LINE CR1 185 781 -796 603 351 62 27 chr6 15686947 15687429 -173592125 + L3 LINE CR1 1076 1574 -3 2400 204 24 22 chr6 15688483 15689022 -173590532 + MER74A LTR ERVL 1 540 -18 2384 86 3 3 chr6 15689029 15689342 -173590212 + AluSp SINE Alu 1 313 0 765 278 86 42 chr6 15689349 15689988 -173589566 + L2 LINE L2 2637 3313 0 748 234 97 21 chr6 15691153 15691391 -173588163 - MIR SINE MIR -1 261 3 484 270 68 14 chr6 15691761 15691909 -173587645 - MER63A DNA MER1_type 0 210 55 204 158 0 0 chr6 15691909 15691947 -173587607 + (TG)n Simple_repeat Simple_repeat 1 38 0 369 241 191 6 chr6 15692323 15692485 -173587069 + MIR SINE MIR 37 228 -34 206 369 67 13 chr6 15692599 15692748 -173586806 + L2 LINE L2 2904 3060 -212 357 234 109 8 chr6 15692978 15693106 -173586448 - MIR3 SINE MIR -7 201 61 4626 95 0 3 chr6 15693539 15694160 -173585394 + L1PA11 LINE L1 5546 6164 -10 180 0 0 0 chr6 15694165 15694185 -173585369 + (TAA)n Simple_repeat Simple_repeat 2 21 0 261 251 185 71 chr6 15694211 15694422 -173585132 + L2 LINE L2 3078 3312 -1 704 274 102 45 chr6 15694458 15694968 -173584586 - L1MEc LINE L1 -3009 3206 2668 31 0 0 0 chr6 15694983 15695014 -173584540 + AT_rich Low_complexity Low_complexity 1 31 0 483 331 56 43 chr6 15695239 15695707 -173583847 - L1MEc LINE L1 -4619 1777 1304 315 0 0 0 chr6 15695708 15695743 -173583811 + (TTC)n Simple_repeat Simple_repeat 2 36 0 238 229 0 49 chr6 15695797 15695858 -173583696 + MER3 DNA MER1_type 41 98 -111 198 103 0 0 chr6 15696053 15696082 -173583472 + (TA)n Simple_repeat Simple_repeat 1 29 0 441 54 0 0 chr6 15696111 15696167 -173583387 + (CA)n Simple_repeat Simple_repeat 2 57 0 315 297 0 85 chr6 15696196 15696361 -173583193 - L1MEc LINE L1 -5538 667 517 1087 192 65 39 chr6 15696655 15696915 -173582639 + L1MD3 LINE L1 7582 7848 -147 1075 128 0 0 chr6 15696927 15697083 -173582471 - AluSg/x SINE Alu -3 309 154 645 139 93 0 chr6 15697092 15697221 -173582333 + L1MD3 LINE L1 7855 7995 0 527 90 0 8 chr6 15697284 15697506 -173582048 + AluY SINE Alu 1 301 -11 2386 186 21 21 chr6 15697877 15697987 -173581567 + MLT1C LTR MaLR 1 110 -357 2494 149 84 0 chr6 15697987 15698404 -173581150 + LTR47A LTR ERVL 1 452 0 2386 186 21 21 chr6 15698404 15698760 -173580794 + MLT1C LTR MaLR 109 467 0 1038 214 54 44 chr6 15699952 15700269 -173579285 - MER33 DNA MER1_type 0 324 5 34 0 0 0 chr6 15701110 15701144 -173578410 + AT_rich Low_complexity Low_complexity 1 34 0 528 145 0 0 chr6 15701144 15701220 -173578334 - FAM SINE Alu -22 163 88 922 219 48 88 chr6 15701252 15701503 -173578051 - MLT1F LTR MaLR -294 248 8 2070 86 8 9 chr6 15702439 15702713 -173576841 + AluSg SINE Alu 1 280 -30 283 56 0 0 chr6 15702713 15702749 -173576805 + (TAAA)n Simple_repeat Simple_repeat 3 164 0 359 282 53 62 chr6 15704110 15704319 -173575235 + HAL1 LINE L1 31 237 -2270 207 0 0 0 chr6 15704452 15704475 -173575079 + (CAA)n Simple_repeat Simple_repeat 2 24 0 894 241 55 43 chr6 15704475 15704820 -173574734 + HAL1 LINE L1 1745 2093 -414 2030 183 66 29 chr6 15704897 15704937 -173574617 - MSTB LTR MaLR 0 426 389 2275 89 14 0 chr6 15704937 15705230 -173574324 + AluSq SINE Alu 1 297 -16 2030 183 66 29 chr6 15705230 15705600 -173573954 - MSTB LTR MaLR -37 389 1 2586 170 74 2 chr6 15705600 15706071 -173573483 - MSTB-int LTR MaLR 0 1651 1147 306 0 0 0 chr6 15708733 15708767 -173570787 + (CA)n Simple_repeat Simple_repeat 2 35 0 713 272 0 0 chr6 15708788 15708961 -173570593 + MIR SINE MIR 4 176 -86 2135 75 0 8 chr6 15709101 15709367 -173570187 + AluY SINE Alu 1 264 -47 2022 234 66 55 chr6 15709719 15710267 -173569287 + MLT2B3 LTR ERVL 1 554 0 219 315 0 14 chr6 15710379 15710452 -173569102 - MIR SINE MIR -189 73 2 180 333 0 0 chr6 15712256 15712313 -173567241 + L2 LINE L2 3256 3312 -1 2494 262 12 4 chr6 15713926 15714488 -173565066 + MLT1F1 LTR MaLR 1 567 0 220 279 44 0 chr6 15715047 15715115 -173564439 - MIR SINE MIR -69 193 123 1605 311 85 14 chr6 15716377 15717233 -173562321 + L2 LINE L2 1978 2894 -420 1825 154 175 21 chr6 15717969 15718391 -173561163 + LTR10A LTR ERV1 15 548 -61 252 304 133 13 chr6 15720213 15720371 -173559183 + MIR SINE MIR 48 224 -38 2321 117 122 8 chr6 15720698 15721082 -173558472 + MSTA LTR MaLR 1 428 0 2054 145 3 0 chr6 15721563 15721867 -173557687 + AluSq SINE Alu 1 305 -8 384 238 0 24 chr6 15723125 15723209 -173556345 + MLT1K LTR MaLR 433 514 -74 932 63 87 0 chr6 15723639 15723766 -173555788 + MER85 DNA T2_type 1 138 -1 1480 257 158 19 chr6 15723865 15724383 -173555171 - MLT1F1 LTR MaLR 0 567 4 198 0 0 0 chr6 15724629 15724651 -173554903 + (CA)n Simple_repeat Simple_repeat 2 23 0 4632 171 32 22 chr6 15724734 15725725 -173553829 - Charlie1a DNA MER1_type -6 1449 449 888 201 0 13 chr6 15725741 15725900 -173553654 + FRAM SINE Alu 1 157 -19 243 0 0 0 chr6 15725907 15725934 -173553620 + (CA)n Simple_repeat Simple_repeat 2 28 0 1281 192 31 102 chr6 15725948 15726381 -173553173 - Charlie1a DNA MER1_type -1035 420 29 1846 128 29 42 chr6 15726732 15727045 -173552509 + AluJo SINE Alu 1 309 -3 225 0 0 0 chr6 15727630 15727655 -173551899 + (CA)n Simple_repeat Simple_repeat 2 26 0 2025 148 3 0 chr6 15728115 15728413 -173551141 + AluSx SINE Alu 1 299 -13 2167 267 89 9 chr6 15728490 15729296 -173550258 + L1ME3A LINE L1 5295 6165 -5 237 280 27 0 chr6 15729562 15729637 -173549917 - L2 LINE L2 -25 3247 3171 180 179 0 0 chr6 15730463 15730502 -173549052 + GA-rich Low_complexity Low_complexity 2 40 0 524 261 137 0 chr6 15731675 15731828 -173547726 + MER5A DNA MER1_type 9 182 -7 491 324 55 21 chr6 15731987 15732225 -173547329 + MLT1K LTR MaLR 334 579 -9 1794 224 75 27 chr6 15733621 15734103 -173545451 - MLT1D LTR MaLR 0 505 1 261 300 133 0 chr6 15736088 15736178 -173543376 - MIR SINE MIR -126 136 35 225 139 0 0 chr6 15736363 15736406 -173543148 + (TC)n Simple_repeat Simple_repeat 1 43 0 263 330 0 0 chr6 15736526 15736614 -173542940 - MIR SINE MIR -55 207 120 977 212 33 24 chr6 15737493 15737705 -173541849 - MER58C DNA MER1_type 0 215 2 197 222 62 49 chr6 15737965 15738046 -173541508 + MIR SINE MIR 73 154 -108 472 238 86 13 chr6 15738535 15738686 -173540868 + MIR3 SINE MIR 33 194 -14 882 169 54 33 chr6 15740484 15740668 -173538886 + MER5A DNA MER1_type 2 189 0 236 290 70 47 chr6 15741455 15741669 -173537885 + L2 LINE L2 3067 3285 -28 194 235 12 74 chr6 15742180 15742261 -173537293 - MIR SINE MIR -46 216 141 2216 112 0 7 chr6 15742482 15742785 -173536769 - AluSg SINE Alu -9 301 1 270 203 14 43 chr6 15743507 15743576 -173535978 + G-rich Low_complexity Low_complexity 4 70 0 411 56 0 0 chr6 15744008 15744062 -173535492 + (TG)n Simple_repeat Simple_repeat 1 54 0 1717 202 62 29 chr6 15744112 15744562 -173534992 - MLT1C LTR MaLR -2 465 1 180 426 0 0 chr6 15744836 15744937 -173534617 - MIR SINE MIR -3 259 159 389 285 207 6 chr6 15744956 15745135 -173534419 - MIR SINE MIR -21 241 27 956 200 28 5 chr6 15746025 15746240 -173533314 - L1MB2 LINE L1 -12 6159 5940 258 281 130 65 chr6 15748916 15749101 -173530453 - MIR SINE MIR -19 243 47 1130 163 76 58 chr6 15749509 15749677 -173529877 + L1MB4 LINE L1 5892 6068 -112 441 54 0 0 chr6 15749677 15749733 -173529821 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 1130 163 76 58 chr6 15749733 15749841 -173529713 + L1MB4 LINE L1 6068 6173 -7 2022 162 3 21 chr6 15749841 15750217 -173529337 + L1MB3 LINE L1 5813 6181 -2 292 330 9 0 chr6 15752262 15752374 -173527180 - MIR SINE MIR 0 262 150 2145 138 40 0 chr6 15752379 15752727 -173526827 + MLT2D LTR ERVL 5 366 -48 241 169 15 31 chr6 15752746 15752811 -173526743 + T-rich Low_complexity Low_complexity 5 68 0 244 167 0 0 chr6 15752835 15752877 -173526677 + MLT2D LTR ERVL 348 389 -8 * 253 56 111 0 chr6 15752845 15752881 -173526673 + MLT2B2 LTR ERVL 476 515 0 372 316 0 0 chr6 15752881 15752995 -173526559 - MIR SINE MIR -117 145 32 233 243 126 19 chr6 15753215 15753318 -173526236 + MIR SINE MIR 84 197 -65 540 311 36 13 chr6 15754045 15754270 -173525284 - MIR SINE MIR -29 233 4 192 280 224 14 chr6 15754320 15754463 -173525091 + MIR3 SINE MIR 33 205 -3 187 261 15 15 chr6 15755500 15755565 -173523989 + L2 LINE L2 3004 3068 -204 231 264 186 0 chr6 15757671 15757800 -173521754 - MIR3 SINE MIR -23 185 33 469 165 146 0 chr6 15758070 15758173 -173521381 + MER96 DNA MER1_type? 50 167 -8 273 57 0 0 chr6 15759191 15759226 -173520328 + (TG)n Simple_repeat Simple_repeat 2 36 0 246 81 0 0 chr6 15760041 15760078 -173519476 + (CA)n Simple_repeat Simple_repeat 1 37 0 314 331 25 16 chr6 15761405 15761526 -173518028 - MIR SINE MIR -71 137 16 241 255 49 49 chr6 15762350 15762452 -173517102 + L2 LINE L2 2988 3089 -183 279 133 0 0 chr6 15762631 15762676 -173516878 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 2090 108 0 14 chr6 15763779 15764065 -173515489 + AluSx SINE Alu 17 298 -14 647 154 29 0 chr6 15764165 15764269 -173515285 + U6 snRNA snRNA 1 107 0 2279 111 0 0 chr6 15764732 15765038 -173514516 + AluY SINE Alu 1 306 -5 2296 112 0 0 chr6 15765397 15765701 -173513853 - AluSc SINE Alu -5 304 1 1375 228 132 41 chr6 15766203 15766664 -173512890 - MLT1D LTR MaLR 0 505 3 320 193 0 0 chr6 15768577 15768634 -173510920 - L2 LINE L2 -12 3260 3204 347 313 60 43 chr6 15769117 15769350 -173510204 - L3 LINE CR1 -33 1544 1308 1269 228 154 27 chr6 15769810 15770258 -173509296 + MLT1D LTR MaLR 1 626 0 1217 261 14 14 chr6 15771333 15771616 -173507938 + Tigger8 DNA MER2_type 4 286 -380 599 236 72 29 chr6 15771672 15771880 -173507674 + Tigger8 DNA MER2_type 421 637 -29 691 220 167 16 chr6 15772088 15772274 -173507280 + MER20 DNA MER1_type 1 214 -5 2444 133 25 46 chr6 15772379 15772814 -173506740 - MSTB LTR MaLR 0 426 1 634 279 88 0 chr6 15772885 15773100 -173506454 - MIR SINE MIR 0 262 29 233 268 98 0 chr6 15774178 15774290 -173505264 - MIR SINE MIR -8 254 132 1212 233 41 80 chr6 15774291 15774751 -173504803 - L1ME3A LINE L1 -9 6161 5720 314 285 89 24 chr6 15774762 15774885 -173504669 - MIR SINE MIR -131 131 1 1807 163 17 98 chr6 15776092 15776502 -173503052 - MLT1B LTR MaLR -9 381 5 207 0 0 0 chr6 15776938 15776961 -173502593 + (CAGAA)n Simple_repeat Simple_repeat 1 23 0 233 188 21 0 chr6 15778044 15778092 -173501462 - L2 LINE L2 0 3313 3265 209 371 61 35 chr6 15778806 15779148 -173500406 - L2 LINE L2 -80 3192 2842 747 165 0 45 chr6 15779509 15779671 -173499883 + FRAM SINE Alu 20 175 0 240 356 127 28 chr6 15780345 15780699 -173498855 - L2 LINE L2 -1149 2165 1777 1889 159 35 35 chr6 15780702 15780945 -173498609 - MER7A DNA MER2_type -2693 345 102 2169 127 0 13 chr6 15780945 15781261 -173498293 + AluSx SINE Alu 1 312 0 1889 159 35 35 chr6 15781261 15781363 -173498191 - MER7A DNA MER2_type -2935 103 2 293 220 285 19 chr6 15781494 15781708 -173497846 + L1ME4a LINE L1 5813 6083 -38 2221 68 24 31 chr6 15783191 15783483 -173496071 + AluSp SINE Alu 1 290 -23 4438 156 103 14 chr6 15783487 15784302 -173495252 - MER54A LTR ERVL -13 888 1 3355 189 50 106 chr6 15784313 15785039 -173494515 - L1MC5 LINE L1 -75 7886 7262 772 168 158 16 chr6 15785039 15785229 -173494325 + MER20 DNA MER1_type 1 217 -2 3355 189 50 106 chr6 15785229 15785784 -173493770 - L1MC5 LINE L1 -699 7262 6677 1719 82 0 0 chr6 15786255 15786463 -173493091 + AluSc SINE Alu 1 208 -101 266 216 0 0 chr6 15786463 15786514 -173493040 + AluSc SINE Alu 249 299 0 189 0 0 0 chr6 15787119 15787140 -173492414 + (T)n Simple_repeat Simple_repeat 1 21 0 590 221 108 28 chr6 15789307 15789520 -173490034 + MLT1J2 LTR MaLR 17 246 -204 622 205 13 128 chr6 15789620 15789842 -173489712 + MLT1J2 LTR MaLR 259 409 0 205 222 44 0 chr6 15789917 15789962 -173489592 + L2 LINE L2 3205 3251 -21 1659 191 36 28 chr6 15790161 15790523 -173489031 + MLT1A1 LTR MaLR 1 365 0 534 253 62 7 chr6 15790797 15790943 -173488611 + MER97b DNA MER1_type? 8 161 -892 342 171 13 13 chr6 15791465 15791541 -173488013 - L1MB8 LINE L1 -104 6074 5999 2287 138 30 54 chr6 15791674 15792101 -173487453 + MSTC LTR MaLR 1 417 -11 328 316 34 0 chr6 15792521 15792638 -173486916 - MIR SINE MIR -79 183 63 250 243 40 27 chr6 15792883 15792957 -173486597 - MLT1L LTR MaLR -318 297 223 236 263 20 71 chr6 15794079 15794178 -173485376 + MIR3 SINE MIR 110 203 -5 199 268 102 24 chr6 15794258 15794385 -173485169 - MIR SINE MIR -10 252 116 562 228 101 153 chr6 15794398 15795437 -173484117 + L2 LINE L2 2295 3296 -17 22 35 0 0 chr6 15796186 15796215 -173483339 + AT_rich Low_complexity Low_complexity 1 29 0 2909 48 0 16 chr6 15796224 15796598 -173482956 - L1PA8 LINE L1 -1 6171 5804 242 149 64 0 chr6 15796769 15796816 -173482738 + MER54A LTR ERVL 337 386 -515 2158 113 0 10 chr6 15796881 15797183 -173482371 - AluSq SINE Alu -12 301 3 2001 203 19 7 chr6 15797294 15797727 -173481827 + MER114 LTR ERV 1 438 -210 366 223 11 11 chr6 15797780 15797874 -173481680 + MER114 LTR ERV 555 648 0 2203 110 3 0 chr6 15798906 15799206 -173480348 - AluSg SINE Alu -9 301 1 180 0 0 0 chr6 15799218 15799238 -173480316 + (T)n Simple_repeat Simple_repeat 1 20 0 314 231 0 0 chr6 15799678 15799743 -173479811 + MIR SINE MIR 83 147 -115 1141 157 13 55 chr6 15799744 15799980 -173479574 + L1MB5 LINE L1 5799 6024 -150 1529 187 43 82 chr6 15799980 15800419 -173479135 + MLT1C LTR MaLR 1 422 -45 700 189 0 7 chr6 15800431 15800574 -173478980 + L1MB5 LINE L1 6025 6166 -8 343 230 35 0 chr6 15800624 15800711 -173478843 + MIR SINE MIR 173 262 0 2861 103 37 18 chr6 15800841 15800882 -173478672 - MLT2A1 LTR ERVL 0 444 405 387 0 0 0 chr6 15800882 15800925 -173478629 + (CA)n Simple_repeat Simple_repeat 2 44 0 2861 103 37 18 chr6 15800925 15801319 -173478235 - MLT2A1 LTR ERVL -39 405 1 531 298 88 17 chr6 15802673 15802911 -173476643 - MIR SINE MIR 0 262 8 216 0 0 0 chr6 15803131 15803155 -173476399 + (A)n Simple_repeat Simple_repeat 1 24 0 222 253 0 27 chr6 15803277 15803352 -173476202 + A-rich Low_complexity Low_complexity 3 75 0 3408 129 17 17 chr6 15803923 15804450 -173475104 - MER1A DNA MER1_type 0 527 1 296 290 0 0 chr6 15804596 15804665 -173474889 + L1ME LINE L1 5525 5593 -528 1876 126 0 0 chr6 15805061 15805316 -173474238 - AluSx SINE Alu -5 307 53 2034 115 7 7 chr6 15805353 15805632 -173473922 - AluSx SINE Alu -19 293 15 500 274 142 5 chr6 15805702 15805892 -173473662 + MIR SINE MIR 47 262 0 1058 214 106 65 chr6 15806011 15806333 -173473221 + MER2 DNA MER2_type 3 337 -8 180 306 42 14 chr6 15806652 15806724 -173472830 - MIR SINE MIR -88 120 47 486 239 61 61 chr6 15807278 15807491 -173472063 + MIR SINE MIR 20 232 -30 2264 89 3 0 chr6 15807556 15807838 -173471716 + AluSp SINE Alu 1 283 -30 2097 99 23 30 chr6 15808616 15808918 -173470636 - AluSq SINE Alu -13 300 1 331 343 50 14 chr6 15809468 15809608 -173469946 + MIR SINE MIR 43 187 -75 501 230 24 8 chr6 15809969 15810095 -173469459 - MER94 DNA DNA 0 134 7 314 189 47 9 chr6 15810351 15810457 -173469097 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 535 44 108 0 chr6 15810457 15810615 -173468939 + (TA)n Simple_repeat Simple_repeat 1 175 0 27 0 0 0 chr6 15810679 15810706 -173468848 + AT_rich Low_complexity Low_complexity 1 27 0 402 243 62 35 chr6 15811460 15811604 -173467950 + MLT1L LTR MaLR 466 613 -2 468 289 44 72 chr6 15812066 15812315 -173467239 + MIR SINE MIR 21 262 0 2282 92 0 0 chr6 15812820 15813126 -173466428 - AluSx SINE Alu 0 306 1 724 280 88 79 chr6 15814245 15814553 -173465001 + Charlie7 DNA MER1_type 89 404 -2208 2418 90 0 19 chr6 15814553 15814864 -173464690 + AluSq SINE Alu 1 305 -8 724 280 88 79 chr6 15814864 15814987 -173464567 + Charlie7 DNA MER1_type 404 524 -2088 1092 142 7 0 chr6 15815080 15815270 -173464284 + AluSg/x SINE Alu 130 320 0 949 213 36 0 chr6 15815272 15815497 -173464057 + Charlie7 DNA MER1_type 599 831 -1781 24 53 0 0 chr6 15815524 15815562 -173463992 + AT_rich Low_complexity Low_complexity 1 38 0 243 0 0 0 chr6 15815591 15815618 -173463936 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr6 15815618 15815639 -173463915 + AT_rich Low_complexity Low_complexity 1 21 0 2273 109 0 3 chr6 15815779 15816083 -173463471 + AluSx SINE Alu 1 303 -9 626 259 132 9 chr6 15816161 15816389 -173463165 + MIR SINE MIR 7 262 0 222 118 0 0 chr6 15816391 15816425 -173463129 + (TTA)n Simple_repeat Simple_repeat 2 35 0 294 29 0 0 chr6 15816557 15816592 -173462962 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 1747 164 4 7 chr6 15816592 15816873 -173462681 - AluJb SINE Alu -32 280 1 1629 145 4 0 chr6 15816879 15817113 -173462441 - AluSx SINE Alu -77 235 1 243 327 77 0 chr6 15817589 15817693 -173461861 + MIR3 SINE MIR 66 177 -31 2802 152 12 0 chr6 15817741 15818162 -173461392 + MSTB LTR MaLR 1 426 0 848 95 16 0 chr6 15818450 15818576 -173460978 + L1MA8 LINE L1 6154 6281 -10 332 328 120 20 chr6 15818597 15818940 -173460614 - LTR33A LTR ERVL -106 415 54 2202 114 0 0 chr6 15819033 15819322 -173460232 - AluSx SINE Alu -15 297 9 270 95 0 0 chr6 15820456 15820498 -173459056 + (GA)n Simple_repeat Simple_repeat 2 43 0 219 284 60 0 chr6 15820590 15820657 -173458897 + MIR SINE MIR 98 168 -94 1942 134 33 0 chr6 15820761 15821036 -173458518 - AluSg SINE Alu -26 284 1 247 279 174 0 chr6 15824635 15824721 -173454833 - MIR SINE MIR -75 187 87 2344 93 3 3 chr6 15826468 15826770 -173452784 + AluSg SINE Alu 1 302 -8 1126 264 40 46 chr6 15827853 15828402 -173451152 - L2 LINE L2 -4 3309 2767 989 236 176 0 chr6 15828407 15828998 -173450556 - LTR50 LTR ERVL -3 792 2 758 221 172 50 chr6 15828999 15829326 -173450228 - L2 LINE L2 -545 2769 2483 2056 125 11 0 chr6 15829326 15829606 -173449948 + AluSx SINE Alu 20 302 -10 758 221 172 50 chr6 15829606 15829731 -173449823 - L2 LINE L2 -831 2483 2183 228 363 124 17 chr6 15829756 15829990 -173449564 + MIR SINE MIR 3 261 -1 24 0 0 0 chr6 15830209 15830233 -173449321 + AT_rich Low_complexity Low_complexity 1 24 0 544 138 184 0 chr6 15830233 15830342 -173449212 - FLAM_C SINE Alu 0 133 5 563 265 86 6 chr6 15831351 15831513 -173448041 + MER5B DNA MER1_type 1 175 -3 724 129 8 8 chr6 15831622 15831640 -173447914 + (TTCC)n Simple_repeat Simple_repeat 1 18 -114 2479 158 10 2 chr6 15831640 15832039 -173447515 - MER57A LTR ERV1 0 403 2 724 129 8 8 chr6 15832039 15832152 -173447402 + (TTCC)n Simple_repeat Simple_repeat 17 132 0 22 35 0 0 chr6 15832419 15832448 -173447106 + AT_rich Low_complexity Low_complexity 1 29 0 1704 171 54 7 chr6 15833809 15834179 -173445375 + AluJo SINE Alu 1 384 0 2087 119 32 3 chr6 15835374 15835719 -173443835 + L1MA4 LINE L1 5941 6295 -5 2492 70 7 0 chr6 15835909 15836209 -173443345 + AluY SINE Alu 1 302 -9 2032 135 10 0 chr6 15836245 15836534 -173443020 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr6 15837604 15837626 -173441928 + AT_rich Low_complexity Low_complexity 1 22 0 275 304 0 0 chr6 15839062 15839141 -173440413 + MIR SINE MIR 48 126 -136 1854 169 0 7 chr6 15889467 15889763 -173389791 + AluJo SINE Alu 1 294 -18 626 263 142 12 chr6 15890243 15890483 -173389071 - MLT1J LTR MaLR 0 511 241 736 240 58 0 chr6 15890903 15891074 -173388480 + MLT1J LTR MaLR 28 208 -303 225 0 0 0 chr6 15891082 15891107 -173388447 + (CA)n Simple_repeat Simple_repeat 2 26 0 1558 182 19 4 chr6 15891109 15891378 -173388176 + AluJo SINE Alu 1 273 -39 616 141 16 8 chr6 15891385 15891506 -173388048 + GA-rich Low_complexity Low_complexity 3 124 0 716 258 20 63 chr6 15891506 15891758 -173387796 + MLT1J LTR MaLR 271 511 0 208 305 63 11 chr6 15892620 15892715 -173386839 + MIR SINE MIR 46 145 -63 2087 125 3 23 chr6 15892730 15893035 -173386519 + AluSx SINE Alu 1 299 -13 1662 170 6 50 chr6 15893970 15894293 -173385261 + AluJo SINE Alu 1 309 -3 3475 169 19 2 chr6 15894511 15895126 -173384428 + L1MB3 LINE L1 5551 6176 -7 586 175 70 0 chr6 15895406 15895520 -173384034 + L1ME3A LINE L1 6034 6155 -15 1651 145 34 0 chr6 15898935 15899204 -173380350 - MLT1B LTR MaLR 0 390 113 292 217 241 0 chr6 15899269 15899352 -173380202 - MIR3 SINE MIR -49 159 57 755 235 31 10 chr6 15899585 15899781 -173379773 - MLT1C LTR MaLR 0 467 268 1170 100 6 6 chr6 15899799 15899969 -173379585 + MER4A LTR ERV1 1 170 -494 2119 105 7 17 chr6 15899978 15900274 -173379280 + MER4A LTR ERV1 372 664 0 1412 166 25 17 chr6 15900274 15900515 -173379039 - MLT1C LTR MaLR -224 243 1 583 134 34 59 chr6 15901480 15901599 -173377955 + MLT1B LTR MaLR 5 120 -270 2477 170 70 19 chr6 15901794 15902324 -173377230 + MER89 LTR ERV1 3 559 0 393 22 0 0 chr6 15903502 15903548 -173376006 + (CA)n Simple_repeat Simple_repeat 1 46 0 279 266 38 0 chr6 15904397 15904476 -173375078 + GA-rich Low_complexity Low_complexity 4 85 0 711 286 95 36 chr6 15905003 15905419 -173374135 - LTR16A LTR ERVL -8 449 1 553 228 102 45 chr6 15905730 15905976 -173373578 - L1ME4a LINE L1 -21 6100 5841 192 238 0 0 chr6 15906437 15906479 -173373075 + L3 LINE CR1 1530 1571 -6 454 168 32 80 chr6 15907799 15907861 -173371693 - LTR33 LTR ERVL 0 521 466 1878 128 40 17 chr6 15907861 15908158 -173371396 - AluSx SINE Alu -3 309 6 454 168 32 80 chr6 15908158 15908220 -173371334 - LTR33 LTR ERVL -55 466 403 478 262 87 17 chr6 15908293 15908465 -173371089 - LTR33 LTR ERVL -236 285 102 1127 203 266 18 chr6 15908970 15909364 -173370190 + MLT1C LTR MaLR 14 467 0 217 250 28 42 chr6 15910918 15910990 -173368564 + MIR SINE MIR 186 256 -6 214 159 68 0 chr6 15911559 15911603 -173367951 + GA-rich Low_complexity Low_complexity 4 50 0 2307 112 0 0 chr6 15912254 15912566 -173366988 + AluSx SINE Alu 1 312 0 827 180 7 0 chr6 15912568 15912707 -173366847 + AluJb SINE Alu 134 273 -39 1682 176 59 115 chr6 15913631 15914170 -173365384 + L1MD1 LINE L1 5722 6230 -12 220 281 0 0 chr6 15914172 15914229 -173365325 + GA-rich Low_complexity Low_complexity 2 58 0 1701 166 35 0 chr6 15915228 15915511 -173364043 - AluJb SINE Alu -19 293 1 27 0 0 0 chr6 15916419 15916446 -173363108 + AT_rich Low_complexity Low_complexity 1 27 0 710 158 105 18 chr6 15918340 15918511 -173361043 + MER53 DNA DNA 1 186 -3 2432 84 0 10 chr6 15918847 15919158 -173360396 + AluY SINE Alu 2 309 -2 2109 124 41 0 chr6 15920608 15920899 -173358655 - AluSq SINE Alu -10 303 1 280 220 0 10 chr6 15920910 15921010 -173358544 - L2 LINE L2 -1 3271 3177 2873 122 19 36 chr6 15921154 15921678 -173357876 - L1MA8 LINE L1 -3 6288 5774 1364 201 0 0 chr6 15921727 15921966 -173357588 - L1MA8 LINE L1 -498 5793 5555 1626 157 3 67 chr6 15922108 15922408 -173357146 - AluJo SINE Alu -31 281 1 233 278 127 24 chr6 15922413 15922539 -173357015 - MER113 DNA MER1_type? -378 143 5 304 169 121 48 chr6 15923059 15923142 -173356412 - MLT1C LTR MaLR -378 89 1 593 245 69 65 chr6 15923142 15923242 -173356312 - L2 LINE L2 -522 2792 2694 2364 52 24 10 chr6 15923242 15923533 -173356021 + AluY SINE Alu 1 295 -16 593 245 69 65 chr6 15923533 15923648 -173355906 - L2 LINE L2 -620 2694 2576 564 274 128 54 chr6 15924270 15924414 -173355140 - L2 LINE L2 0 3313 3181 2149 132 3 0 chr6 15924414 15924717 -173354837 + AluSq SINE Alu 1 304 -9 564 274 128 54 chr6 15924717 15924977 -173354577 - L2 LINE L2 -132 3181 2879 262 242 0 15 chr6 15925012 15925078 -173354476 - MER20B DNA MER1_type -623 160 96 725 269 63 16 chr6 15925197 15925247 -173354307 - L2 LINE L2 -474 2840 2794 1806 177 107 19 chr6 15925247 15925676 -173353878 - MLT1C LTR MaLR 0 467 1 725 269 63 16 chr6 15925676 15925878 -173353676 - L2 LINE L2 -520 2794 2576 207 0 0 0 chr6 15926484 15926507 -173353047 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1293 220 23 71 chr6 15926975 15927329 -173352225 + MER58B DNA MER1_type 4 340 -1 2346 113 0 3 chr6 15927395 15927706 -173351848 - AluSx SINE Alu -2 310 1 357 282 57 8 chr6 15927748 15927872 -173351682 - L2 LINE L2 -1 3271 3142 514 220 88 90 chr6 15928240 15928499 -173351055 + L1ME3A LINE L1 5682 5940 -249 733 199 50 50 chr6 15928685 15928866 -173350688 + AluJo SINE Alu 125 305 -7 643 116 0 0 chr6 15928876 15928971 -173350583 + L1MA3 LINE L1 6211 6305 0 377 243 32 54 chr6 15929026 15929211 -173350343 - L2 LINE L2 -580 2734 2554 1784 70 0 17 chr6 15929323 15929564 -173349990 + L1PA14 LINE L1 5925 6161 0 411 244 76 0 chr6 15931187 15931306 -173348248 - MIR3 SINE MIR -23 185 58 1284 132 57 44 chr6 15931597 15931824 -173347730 + Tigger2a DNA MER2_type 1 230 -204 1931 132 0 0 chr6 15931882 15932140 -173347414 - AluSx SINE Alu -54 258 1 1152 178 82 0 chr6 15932142 15932361 -173347193 + Tigger2a DNA MER2_type 198 434 0 1736 174 0 3 chr6 15932559 15932852 -173346702 + AluJo SINE Alu 1 292 -20 202 258 258 0 chr6 15932861 15932950 -173346604 + MER5A DNA MER1_type 69 180 -9 2198 126 0 0 chr6 15933094 15933388 -173346166 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr6 15934148 15934168 -173345386 + (A)n Simple_repeat Simple_repeat 1 20 0 249 108 0 0 chr6 15934385 15934422 -173345132 + (CA)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr6 15934613 15934633 -173344921 + (A)n Simple_repeat Simple_repeat 1 20 0 2125 133 0 13 chr6 15935835 15936144 -173343410 - AluSx SINE Alu -7 305 1 33 56 0 0 chr6 15936615 15936669 -173342885 + AT_rich Low_complexity Low_complexity 1 54 0 2051 121 3 0 chr6 15936687 15936969 -173342585 + AluSx SINE Alu 15 297 -15 23 54 0 0 chr6 15937001 15937038 -173342516 + AT_rich Low_complexity Low_complexity 1 37 0 1706 181 15 75 chr6 15937312 15937458 -173342096 + MLT1A2 LTR MaLR 1 154 -220 2029 188 25 0 chr6 15937458 15937814 -173341740 + MLT1A1 LTR MaLR 1 365 0 1706 181 15 75 chr6 15937814 15938065 -173341489 + MLT1A2 LTR MaLR 154 374 0 195 42 0 0 chr6 15938184 15938208 -173341346 + (TTCC)n Simple_repeat Simple_repeat 2 25 0 234 0 0 0 chr6 15938994 15939020 -173340534 + (A)n Simple_repeat Simple_repeat 1 26 0 192 97 0 0 chr6 15939181 15939212 -173340342 + (A)n Simple_repeat Simple_repeat 1 31 0 2502 56 7 3 chr6 15939478 15939780 -173339774 + AluSp SINE Alu 1 303 -10 796 277 101 71 chr6 15940572 15941759 -173337795 - L1ME LINE L1 -260 5904 4660 2490 66 0 3 chr6 15941759 15942060 -173337494 + AluSp SINE Alu 3 302 -11 796 277 101 71 chr6 15942060 15942341 -173337213 - L1ME LINE L1 -1504 4660 4389 2350 87 3 6 chr6 15942579 15942890 -173336664 + AluSp SINE Alu 1 310 -3 1365 237 55 23 chr6 15943688 15944072 -173335482 - MSTD LTR MaLR 0 396 1 2488 77 7 0 chr6 15944842 15945152 -173334402 + AluSp SINE Alu 1 312 -1 791 136 0 0 chr6 15947712 15947822 -173331732 + MSTC LTR MaLR 1 110 -318 741 151 8 0 chr6 15947812 15947931 -173331623 + MSTC LTR MaLR 309 428 0 * 22 0 0 0 chr6 15947951 15947973 -173331581 + AT_rich Low_complexity Low_complexity 1 22 0 316 208 57 28 chr6 15948547 15948653 -173330901 + L1 LINE L1 5172 5280 -866 233 318 12 12 chr6 15948662 15948747 -173330807 + L1MC/D LINE L1 5545 5629 -2179 221 290 93 93 chr6 15949479 15949803 -173329751 - L2 LINE L2 -12 3260 2937 712 168 34 0 chr6 15950332 15950451 -173329103 + AluY SINE Alu 2 124 -187 4323 131 96 48 chr6 15950453 15951847 -173327707 - pTR5 LTR ERV1 0 2438 744 1430 70 0 30 chr6 15951847 15952046 -173327508 + AluY SINE Alu 119 311 0 739 184 63 23 chr6 15952096 15952270 -173327284 - MER5A DNA MER1_type -7 182 2 196 292 15 15 chr6 15952270 15952333 -173327221 - MIR SINE MIR -63 145 83 1507 170 49 35 chr6 15953725 15954013 -173325541 - AluJo SINE Alu -20 292 1 257 288 0 0 chr6 15955317 15955376 -173324178 + MIR SINE MIR 87 145 -63 561 172 123 0 chr6 15956091 15956213 -173323341 - MER103 DNA DNA -3 163 27 1891 166 3 10 chr6 15956228 15956542 -173323012 + AluJb SINE Alu 1 312 0 244 319 138 12 chr6 15956901 15957061 -173322493 - MIR3 SINE MIR -5 203 24 404 258 166 6 chr6 15957273 15957436 -173322118 + MIR3 SINE MIR 20 208 0 1404 204 15 55 chr6 15961260 15961624 -173317930 - MLT1A1 LTR MaLR -3 425 20 2518 161 0 45 chr6 15961629 15962004 -173317550 + Tigger2a DNA MER2_type 3 356 -2352 1682 166 6 54 chr6 15962004 15962317 -173317237 + AluJb SINE Alu 1 298 -14 2518 161 0 45 chr6 15962317 15962388 -173317166 + Tigger2a DNA MER2_type 356 429 -5 425 255 31 31 chr6 15962557 15962718 -173316836 + MIR3 SINE MIR 34 194 -14 1244 143 0 11 chr6 15962865 15963054 -173316500 + AluJo SINE Alu 1 187 -125 249 27 0 0 chr6 15963055 15963092 -173316462 + Alu SINE Alu 130 166 0 207 222 25 74 chr6 15964100 15964181 -173315373 - MIR SINE MIR -78 184 108 198 297 0 27 chr6 15965685 15965759 -173313795 + L2 LINE L2 3230 3301 -12 429 218 7 14 chr6 15965810 15965952 -173313602 + GA-rich Low_complexity Low_complexity 4 144 0 264 59 0 0 chr6 15966866 15966900 -173312654 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 599 135 0 9 chr6 15966990 15967101 -173312453 + (GGAA)n Simple_repeat Simple_repeat 4 113 0 576 291 14 19 chr6 15967106 15967316 -173312238 - MIR SINE MIR -14 248 40 830 233 48 31 chr6 15967706 15967934 -173311620 + MLT1J LTR MaLR 28 259 -252 2146 160 3 8 chr6 15968277 15968645 -173310909 + MER47A DNA MER2_type 1 366 0 2151 147 0 0 chr6 15969510 15969822 -173309732 - AluSx SINE Alu 0 312 1 1910 124 40 40 chr6 15970895 15971194 -173308360 - AluSg SINE Alu -11 299 1 2089 98 4 7 chr6 15973064 15973338 -173306216 + AluSc SINE Alu 1 273 -36 28 29 0 0 chr6 15973338 15973373 -173306181 + AT_rich Low_complexity Low_complexity 1 35 0 223 298 96 10 chr6 15973847 15973951 -173305603 - L2 LINE L2 -6 3266 3154 294 354 53 0 chr6 15973993 15974106 -173305448 + L2 LINE L2 3150 3268 -4 248 0 0 30 chr6 15974956 15974989 -173304565 + (CA)n Simple_repeat Simple_repeat 2 33 0 2179 190 70 0 chr6 15975745 15976176 -173303378 - LOR1b LTR ERV1 0 461 1 2975 239 17 2 chr6 15976454 15977095 -173302459 + MER82 DNA MER2_type 2 652 -1 281 102 8 76 chr6 15977251 15977369 -173302185 + (TA)n Simple_repeat Simple_repeat 1 110 0 1426 138 0 5 chr6 15977372 15977582 -173301972 - AluJb SINE Alu -6 306 98 22 35 0 0 chr6 15977737 15977766 -173301788 + AT_rich Low_complexity Low_complexity 1 29 0 673 158 72 13 chr6 15978228 15978380 -173301174 - MER58 DNA MER1_type -1 2419 2259 1801 169 3 13 chr6 15978382 15978683 -173300871 + AluSq SINE Alu 1 298 -15 353 213 11 75 chr6 15978686 15978780 -173300774 - MER58 DNA MER1_type -250 91 4 723 203 172 0 chr6 15978795 15978958 -173300596 + MER3 DNA MER1_type 1 191 -18 724 210 40 158 chr6 15979172 15979236 -173300318 + MER119 DNA MER1_type 8 78 -505 1705 176 30 10 chr6 15979236 15979531 -173300023 - AluJb SINE Alu -9 303 3 724 210 40 158 chr6 15979531 15979794 -173299760 + MER119 DNA MER1_type 78 296 -287 1813 103 64 29 chr6 15980073 15980379 -173299175 - AluJo SINE Alu 0 312 2 240 111 0 0 chr6 15980964 15981000 -173298554 + (T)n Simple_repeat Simple_repeat 1 36 0 241 336 56 8 chr6 15981356 15981481 -173298073 - L2 LINE L2 -26 3246 3116 428 368 36 10 chr6 15981874 15982067 -173297487 + L2 LINE L2 2983 3180 -92 802 140 6 28 chr6 15982081 15982260 -173297294 + GA-rich Low_complexity Low_complexity 2 176 0 1824 197 117 5 chr6 15982483 15982895 -173296659 - Charlie4a DNA MER1_type -13 495 38 305 309 69 37 chr6 15982933 15983121 -173296433 - L2 LINE L2 -1407 1907 1714 1403 157 92 0 chr6 15985665 15985927 -173293627 + MER7A DNA MER2_type 1 284 -62 852 159 0 132 chr6 15985998 15986187 -173293367 + Tigger3(Golem) DNA MER2_type 2865 3028 -1 2358 108 0 0 chr6 15988003 15988308 -173291246 - AluSq SINE Alu -6 307 3 2226 136 0 0 chr6 15988756 15989066 -173290488 + AluSx SINE Alu 1 310 -2 974 181 0 12 chr6 15989188 15989354 -173290200 + AluJb SINE Alu 136 299 -13 550 249 170 61 chr6 15989586 15990081 -173289473 + MLT1H LTR MaLR 1 549 0 326 301 0 0 chr6 15990495 15990598 -173288956 - MIR SINE MIR 0 262 160 893 283 215 8 chr6 15990604 15991093 -173288461 - L2 LINE L2 0 3313 2927 2025 134 3 13 chr6 15991093 15991406 -173288148 + AluJb SINE Alu 1 310 -2 893 283 215 8 chr6 15991406 15991604 -173287950 - L2 LINE L2 -386 2927 2471 322 309 79 14 chr6 15991623 15991762 -173287792 - MIR SINE MIR -113 149 2 237 180 40 0 chr6 15992559 15992609 -173286945 + CT-rich Low_complexity Low_complexity 1 52 0 668 201 5 79 chr6 15993176 15993365 -173286189 + MIR SINE MIR 61 235 -27 1672 159 43 40 chr6 15993370 15993671 -173285883 - AluJo SINE Alu -10 302 1 21 57 0 0 chr6 15993671 15993706 -173285848 + AT_rich Low_complexity Low_complexity 1 35 0 1278 207 0 7 chr6 15993961 15994231 -173285323 + AluSc SINE Alu 12 279 -30 2109 125 57 20 chr6 15995451 15995802 -173283752 - THE1B LTR MaLR 0 364 1 192 152 0 0 chr6 15996887 15996920 -173282634 + T-rich Low_complexity Low_complexity 1 33 0 2141 120 0 0 chr6 15997035 15997339 -173282215 + AluSx SINE Alu 1 304 0 753 195 32 37 chr6 15998425 15998615 -173280939 - MER53 DNA DNA 0 189 1 249 259 47 12 chr6 15998830 15998915 -173280639 + GA-rich Low_complexity Low_complexity 1 88 0 219 69 0 0 chr6 16000978 16001007 -173278547 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr6 16001214 16001235 -173278319 + AT_rich Low_complexity Low_complexity 1 21 0 245 297 69 63 chr6 16001598 16001773 -173277781 - MIR SINE MIR -67 195 20 975 169 0 0 chr6 16003137 16003325 -173276229 - AluJo/FRAM SINE Alu 0 321 134 2179 101 35 0 chr6 16003325 16003611 -173275943 - AluSx SINE Alu -6 306 11 845 339 97 21 chr6 16004175 16005134 -173274420 - L2 LINE L2 -576 2738 1707 235 281 88 9 chr6 16005309 16005423 -173274131 - MIR3 SINE MIR -13 195 73 25 0 0 0 chr6 16006195 16006220 -173273334 + AT_rich Low_complexity Low_complexity 1 25 0 566 211 109 0 chr6 16008023 16008086 -173271468 - MER5A DNA MER1_type 0 189 134 2600 38 3 25 chr6 16008086 16008400 -173271154 + AluY SINE Alu 1 307 -4 566 211 109 0 chr6 16008400 16008483 -173271071 - MER5A DNA MER1_type -55 134 27 245 29 29 0 chr6 16008604 16008638 -173270916 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 449 248 15 14 chr6 16009023 16009162 -173270392 - L1ME3 LINE L1 0 6170 6031 1492 109 0 35 chr6 16009166 16009396 -173270158 - AluSq SINE Alu -9 304 83 1932 128 0 7 chr6 16009396 16009678 -173269876 - AluSx SINE Alu -28 284 5 461 283 54 67 chr6 16009693 16010098 -173269456 - L1MB8 LINE L1 -220 5944 5542 448 282 32 32 chr6 16010213 16010337 -173269217 - L2 LINE L2 0 3313 3190 1653 162 23 10 chr6 16010451 16010576 -173268978 + AluJb SINE Alu 5 127 -185 2208 97 3 3 chr6 16010576 16010875 -173268679 + AluSq SINE Alu 1 299 -14 1653 162 23 10 chr6 16010875 16011052 -173268502 + AluJb SINE Alu 127 311 -1 2453 43 7 3 chr6 16011612 16011913 -173267641 + AluY SINE Alu 1 302 -9 4157 179 13 55 chr6 16012565 16012784 -173266770 - Charlie1a DNA MER1_type -1306 1455 1228 2077 99 0 0 chr6 16012784 16013093 -173266461 + AluSx SINE Alu 1 309 0 4157 179 13 55 chr6 16013093 16013867 -173265687 - Charlie1a DNA MER1_type -1533 1228 503 1170 206 56 103 chr6 16013906 16014373 -173265181 + MLT1C LTR MaLR 23 467 0 * 2057 228 16 46 chr6 16014373 16014587 -173264967 - Charlie1a DNA MER1_type -2259 502 283 2291 69 16 0 chr6 16014587 16014890 -173264664 + AluSp SINE Alu 1 308 -5 2057 228 16 46 chr6 16014890 16015191 -173264363 - Charlie1a DNA MER1_type -2478 283 3 241 342 71 26 chr6 16015528 16015683 -173263871 + L2 LINE L2 2902 3063 -209 2108 127 0 0 chr6 16016155 16016463 -173263091 + AluSx SINE Alu 1 308 -4 397 301 62 20 chr6 16016711 16016857 -173262697 + L2 LINE L2 3117 3268 -4 474 92 46 58 chr6 16017707 16017794 -173261760 - MER53 DNA DNA -2 187 102 513 0 0 0 chr6 16018038 16018095 -173261459 + (TTTTA)n Simple_repeat Simple_repeat 2 58 0 1915 111 30 0 chr6 16018097 16018368 -173261186 - AluSg SINE Alu -31 279 1 339 366 73 52 chr6 16018946 16019274 -173260280 + L1ME LINE L1 5460 5794 -376 2395 54 0 0 chr6 16019285 16019581 -173259973 + AluY SINE Alu 1 296 -15 2045 128 0 0 chr6 16019651 16019947 -173259607 + AluSx SINE Alu 1 296 -16 629 283 61 67 chr6 16019951 16020356 -173259198 - MLT1I LTR MaLR 0 409 5 2037 104 3 10 chr6 16020397 16020704 -173258850 + AluSc SINE Alu 1 305 -4 304 243 37 19 chr6 16020809 16020916 -173258638 + L1ME4a LINE L1 6012 6120 -1 195 129 0 0 chr6 16021857 16021888 -173257666 + (A)n Simple_repeat Simple_repeat 1 31 0 2052 114 0 20 chr6 16021890 16022196 -173257358 + AluSg SINE Alu 1 300 -10 2204 98 3 0 chr6 16023478 16023784 -173255770 - AluSp SINE Alu -5 308 2 2035 156 15 38 chr6 16023923 16024225 -173255329 - MLT1B LTR MaLR 0 390 98 1747 135 43 0 chr6 16024225 16024507 -173255047 + AluSx SINE Alu 14 307 -5 2035 156 15 38 chr6 16024507 16024602 -173254952 - MLT1B LTR MaLR -292 98 2 2025 90 31 3 chr6 16025981 16026271 -173253283 + AluSg SINE Alu 1 298 -12 204 67 0 0 chr6 16026271 16026301 -173253253 + (TA)n Simple_repeat Simple_repeat 2 31 0 863 284 43 16 chr6 16026695 16026949 -173252605 + MIR SINE MIR 2 262 0 240 270 32 0 chr6 16026991 16027054 -173252500 - MIR SINE MIR -2 260 196 31 0 0 0 chr6 16027063 16027094 -173252460 + AT_rich Low_complexity Low_complexity 1 31 0 445 250 224 7 chr6 16027599 16027751 -173251803 - MIR SINE MIR -71 191 7 843 200 6 6 chr6 16027892 16028067 -173251487 + FAM SINE Alu 1 49 0 1446 263 77 29 chr6 16028082 16028808 -173250746 - L1MC4a LINE L1 -334 5787 5390 2028 109 27 3 chr6 16029509 16029802 -173249752 + AluSq SINE Alu 1 300 -13 337 302 78 15 chr6 16029925 16030115 -173249439 - L1ME LINE L1 -312 5809 5632 183 80 0 0 chr6 16030115 16030140 -173249414 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1661 156 14 18 chr6 16030144 16030426 -173249128 - AluJo SINE Alu -31 281 1 371 291 127 8 chr6 16030464 16030598 -173248956 - L2 LINE L2 0 3313 3164 500 292 131 63 chr6 16030755 16031161 -173248393 - L2 LINE L2 -338 2976 2599 2042 112 3 0 chr6 16031161 16031457 -173248097 - AluSq SINE Alu -15 298 2 500 292 131 63 chr6 16031457 16031759 -173247795 - L2 LINE L2 -715 2599 2220 273 206 32 16 chr6 16033048 16033111 -173246443 - L1ME4a LINE L1 -90 6031 5968 2253 103 7 0 chr6 16034024 16034334 -173245220 + AluSx SINE Alu 1 312 0 303 250 15 0 chr6 16034452 16034520 -173245034 - MER5B DNA MER1_type 0 178 110 203 149 43 21 chr6 16034531 16034578 -173244976 + (CACCC)n Simple_repeat Simple_repeat 4 51 0 23 0 0 0 chr6 16034905 16034928 -173244626 + AT_rich Low_complexity Low_complexity 1 23 0 2168 106 3 0 chr6 16035992 16036293 -173243261 + AluSp SINE Alu 1 302 -11 369 342 176 5 chr6 16036621 16037036 -173242518 + L2 LINE L2 2013 2498 -816 458 305 43 53 chr6 16037359 16037753 -173241801 + L2 LINE L2 2579 2968 -346 2456 125 188 10 chr6 16037936 16038416 -173241138 + MER34B LTR ERV1 1 565 0 1530 201 43 59 chr6 16039949 16040478 -173239076 - MER39 LTR ERV1 -2 705 1 1095 103 75 61 chr6 16041096 16041310 -173238244 - MER34B LTR ERV1 0 565 349 1325 210 28 10 chr6 16041311 16041602 -173237952 - AluJo SINE Alu -13 299 4 758 176 0 0 chr6 16041607 16041732 -173237822 - FLAM_C SINE Alu -12 131 7 2082 167 14 3 chr6 16041740 16042087 -173237467 - MER34B LTR ERV1 -214 351 1 1547 179 42 0 chr6 16042761 16043046 -173236508 - AluJb SINE Alu -15 297 1 189 0 0 0 chr6 16044354 16044375 -173235179 + (TC)n Simple_repeat Simple_repeat 2 22 0 904 131 7 0 chr6 16044379 16044516 -173235038 - FLAM_C SINE Alu -5 138 1 254 132 19 0 chr6 16044516 16044569 -173234985 + CT-rich Low_complexity Low_complexity 1 54 0 364 200 124 65 chr6 16045888 16046073 -173233481 - MER34C LTR ERV1 -5 580 385 2202 94 33 0 chr6 16046912 16047211 -173232343 + AluSx SINE Alu 1 309 -3 950 165 33 0 chr6 16047502 16047684 -173231870 - MER53 DNA DNA -1 188 1 208 399 74 31 chr6 16050611 16050774 -173228780 + L2 LINE L2 3102 3271 -1 2123 102 7 0 chr6 16051262 16051565 -173227989 + AluSq SINE Alu 2 306 -7 2144 116 10 0 chr6 16052807 16053117 -173226437 + AluSq SINE Alu 1 313 0 1574 98 45 29 chr6 16054229 16054473 -173225081 - AluSx SINE Alu -17 295 48 488 219 10 0 chr6 16054715 16054811 -173224743 + MER5A DNA MER1_type 10 106 -83 478 326 32 11 chr6 16054961 16055151 -173224403 - MIR SINE MIR -55 207 14 805 161 0 29 chr6 16055538 16055675 -173223879 - FLAM_C SINE Alu 0 133 1 181 288 207 27 chr6 16056036 16056147 -173223407 + L3 LINE CR1 340 470 -1107 2431 203 42 71 chr6 16056714 16056916 -173222638 + MER63C DNA MER1_type 2 208 -854 705 118 55 0 chr6 16056916 16057026 -173222528 - FLAM_C SINE Alu -16 117 2 2431 203 42 71 chr6 16057026 16057359 -173222195 + MER63C DNA MER1_type 208 549 -513 908 228 27 14 chr6 16057359 16057578 -173221976 - MER58A DNA MER1_type -1 223 2 2431 203 42 71 chr6 16057578 16057742 -173221812 + MER63C DNA MER1_type 549 716 -346 2600 159 19 21 chr6 16057742 16058207 -173221347 - MLT1C LTR MaLR -1 466 3 2431 203 42 71 chr6 16058207 16058267 -173221287 + MER63C DNA MER1_type 716 776 -286 1918 57 4 12 chr6 16058267 16058514 -173221040 + AluY SINE Alu 39 306 0 208 0 0 0 chr6 16058514 16058537 -173221017 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2114 123 3 0 chr6 16058547 16058855 -173220699 + AluSg SINE Alu 1 309 -1 2431 203 42 71 chr6 16058855 16058952 -173220602 + MER63C DNA MER1_type 785 842 -90 1684 161 0 57 chr6 16058993 16059309 -173220245 - AluSx SINE Alu -12 300 3 455 212 121 0 chr6 16059311 16059410 -173220144 + MER63C DNA MER1_type 820 930 0 2929 68 3 0 chr6 16059459 16059813 -173219741 + THE1A LTR MaLR 1 355 0 680 285 28 64 chr6 16060631 16061044 -173218510 - MLT1J1 LTR MaLR 0 446 71 2168 202 29 2 chr6 16061412 16061827 -173217727 - MSTB LTR MaLR 0 426 1 2156 105 3 7 chr6 16062249 16062553 -173217001 + AluSq SINE Alu 1 303 -10 2206 80 3 7 chr6 16063109 16063408 -173216146 + AluY SINE Alu 1 298 -13 280 242 117 40 chr6 16064225 16064525 -173215029 + MLT1G1 LTR MaLR 3 351 -204 289 262 74 8 chr6 16064525 16064647 -173214907 + MLT1G1 LTR MaLR 462 591 -4 208 339 57 24 chr6 16064676 16064800 -173214754 + MIR SINE MIR 17 144 -118 189 107 0 0 chr6 16064927 16064955 -173214599 + (CA)n Simple_repeat Simple_repeat 1 28 0 198 0 0 0 chr6 16064978 16065000 -173214554 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2165 97 3 0 chr6 16065003 16065291 -173214263 - AluSp SINE Alu -24 289 1 370 235 137 78 chr6 16065378 16065582 -173213972 + MLT1K LTR MaLR 369 584 -4 211 263 18 0 chr6 16066123 16066180 -173213374 + MIR SINE MIR 95 152 -56 2145 113 0 3 chr6 16066180 16066482 -173213072 + AluSq SINE Alu 1 301 -12 2212 170 22 3 chr6 16066556 16066914 -173212640 + MLT1A1 LTR MaLR 1 365 0 207 246 185 0 chr6 16067075 16067140 -173212414 - MIR SINE MIR -12 250 174 8461 125 72 69 chr6 16067180 16068467 -173211087 + L1PA10 LINE L1 4026 5329 -839 2071 104 3 10 chr6 16068467 16068766 -173210788 + AluSx SINE Alu 1 297 -15 8461 125 72 69 chr6 16068766 16069603 -173209951 + L1PA10 LINE L1 5329 6163 -5 619 264 81 30 chr6 16069824 16070222 -173209332 + L1ME3A LINE L1 5727 6169 -1 2282 66 0 53 chr6 16070485 16070803 -173208751 - AluY SINE Alu -10 301 1 660 217 142 9 chr6 16071032 16071244 -173208310 + MIR SINE MIR 5 244 -18 435 324 35 12 chr6 16071508 16071678 -173207876 - MIR SINE MIR -88 174 1 620 215 30 0 chr6 16072075 16072210 -173207344 - MER77 LTR ERV1 0 605 467 2126 92 7 26 chr6 16072214 16072517 -173207037 + AluSq SINE Alu 1 297 -16 267 217 0 0 chr6 16072517 16072577 -173206977 + GA-rich Low_complexity Low_complexity 1 60 0 1011 180 14 104 chr6 16072577 16072855 -173206699 - LTR37B LTR ERV1 -159 309 57 1397 169 33 113 chr6 16072879 16073276 -173206278 + MLT1A1 LTR MaLR 1 365 0 233 252 98 70 chr6 16074035 16074178 -173205376 - MER5A DNA MER1_type -24 165 19 860 225 107 0 chr6 16074448 16074626 -173204928 + MER58A DNA MER1_type 2 198 -26 1487 256 43 34 chr6 16074693 16074855 -173204699 + L1ME1 LINE L1 5259 5418 -748 2124 116 3 28 chr6 16074855 16075175 -173204379 + AluSx SINE Alu 1 312 0 1487 256 43 34 chr6 16075175 16075306 -173204248 + L1ME1 LINE L1 5418 5546 -620 2171 109 0 0 chr6 16075306 16075609 -173203945 - AluSx SINE Alu -9 303 1 1487 256 43 34 chr6 16075609 16075760 -173203794 + L1ME1 LINE L1 5546 5708 -458 929 112 0 8 chr6 16075781 16075915 -173203639 - FLAM_C SINE Alu -6 137 5 1692 187 111 28 chr6 16075920 16076212 -173203342 + L1ME1 LINE L1 5702 6041 -125 2086 126 7 0 chr6 16076212 16076513 -173203041 + AluSx SINE Alu 1 303 -9 1692 187 111 28 chr6 16076513 16076643 -173202911 + L1ME1 LINE L1 6041 6159 -7 1246 213 22 0 chr6 16076655 16076932 -173202622 + L1MC4 LINE L1 6935 7217 -825 1090 184 25 72 chr6 16076937 16077215 -173202339 + AluJo SINE Alu 1 265 -47 964 216 51 0 chr6 16077229 16077469 -173202085 + L1MC4a LINE L1 7127 7554 -441 1989 125 0 0 chr6 16077482 16077763 -173201791 + AluSx SINE Alu 1 281 -31 2406 97 132 5 chr6 16078863 16079243 -173200311 + MSTA LTR MaLR 1 428 0 3221 198 80 39 chr6 16081478 16082607 -173196947 + L1M3 LINE L1 4366 5555 -613 1144 157 44 39 chr6 16082607 16082667 -173196887 + AluJb SINE Alu 83 141 -171 2260 99 0 0 chr6 16082667 16082970 -173196584 + AluSq SINE Alu 1 303 -10 1144 157 44 39 chr6 16082970 16083138 -173196416 + AluJb SINE Alu 141 312 0 3735 149 135 34 chr6 16083479 16084825 -173194729 + pTR5 LTR ERV1 741 2606 0 2115 100 3 7 chr6 16085691 16085991 -173193563 + AluSq SINE Alu 1 299 -14 737 176 0 23 chr6 16086871 16087002 -173192552 - FLAM_C SINE Alu -3 130 3 2090 71 41 20 chr6 16087233 16087528 -173192026 + AluY SINE Alu 1 301 -10 2161 106 0 3 chr6 16087549 16087850 -173191704 + AluSx SINE Alu 1 300 -12 2052 121 3 0 chr6 16088406 16088703 -173190851 + AluSx SINE Alu 1 298 -14 519 274 92 24 chr6 16089795 16089959 -173189595 - MER69A DNA AcHobo -2 175 1 321 356 75 6 chr6 16090443 16090617 -173188937 + MIR3 SINE MIR 7 192 -16 304 219 12 37 chr6 16091631 16091713 -173187841 + MER116 DNA Mariner 1 80 0 1144 161 18 40 chr6 16091845 16092069 -173187485 + MER20 DNA MER1_type 1 219 0 231 200 0 0 chr6 16093957 16093997 -173185557 - MIR SINE MIR -101 161 122 2148 104 7 0 chr6 16094124 16094433 -173185121 + AluSx SINE Alu 1 311 -1 252 0 0 0 chr6 16094538 16094566 -173184988 + (TG)n Simple_repeat Simple_repeat 1 28 0 2107 103 33 0 chr6 16094668 16094970 -173184584 + AluSx SINE Alu 1 312 0 2215 72 20 0 chr6 16095345 16095638 -173183916 + AluY SINE Alu 1 299 -12 2268 87 0 3 chr6 16095976 16096276 -173183278 + AluSq SINE Alu 1 299 -14 1681 135 7 4 chr6 16096386 16096684 -173182870 + AluJo SINE Alu 11 309 0 801 214 96 123 chr6 16096820 16097260 -173182294 + MER113 DNA MER1_type? 20 447 -74 2310 82 0 0 chr6 16097511 16097815 -173181739 - AluY SINE Alu -7 304 1 2211 113 0 0 chr6 16098567 16098876 -173180678 - AluSx SINE Alu -1 311 3 498 201 73 62 chr6 16098986 16099165 -173180389 - MER34B LTR ERV1 0 565 385 2212 105 0 0 chr6 16099176 16099472 -173180082 + AluSx SINE Alu 1 296 -16 759 203 0 0 chr6 16099735 16099863 -173179691 + FLAM_C SINE Alu 1 128 -5 911 127 0 15 chr6 16099927 16100061 -173179493 - FLAM_C SINE Alu -1 132 1 236 200 109 0 chr6 16100087 16100142 -173179412 - MER34C LTR ERV1 -485 100 40 255 61 0 0 chr6 16100460 16100493 -173179061 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 1880 129 4 0 chr6 16101291 16101594 -173177960 - AluSx SINE Alu 0 304 1 22 35 0 0 chr6 16101741 16101770 -173177784 + AT_rich Low_complexity Low_complexity 1 29 0 1212 249 90 21 chr6 16102451 16102885 -173176669 + MER110A LTR ERV1 1 464 -4 998 99 0 0 chr6 16103011 16103142 -173176412 + AluSq/x SINE Alu 1 131 -182 1981 128 10 0 chr6 16103149 16103275 -173176279 + AluSx SINE Alu 1 124 -188 279 0 0 0 chr6 16103275 16103306 -173176248 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1981 128 10 0 chr6 16103306 16103475 -173176079 + AluSx SINE Alu 124 299 -13 236 193 0 18 chr6 16103684 16103741 -173175813 - L1MA5 LINE L1 -2 6298 6243 * 922 140 9 9 chr6 16103718 16103889 -173175665 - L1MA5 LINE L1 -10 6302 6128 1448 184 44 0 chr6 16103891 16104163 -173175391 + AluJo SINE Alu 11 294 -18 5392 152 17 32 chr6 16104174 16105209 -173174345 - L1MA5 LINE L1 -152 6148 5146 2273 83 7 0 chr6 16105209 16105510 -173174044 - AluSc SINE Alu -6 303 1 5392 152 17 32 chr6 16105510 16105644 -173173910 - L1MA5 LINE L1 -1154 5146 5012 981 152 21 11 chr6 16105644 16105835 -173173719 - L1MC2 LINE L1 -15 6329 6137 2644 149 97 166 chr6 16105835 16105914 -173173640 - L1MC3 LINE L1 -191 7594 7511 381 43 0 0 chr6 16105914 16105961 -173173593 + (CA)n Simple_repeat Simple_repeat 2 48 0 1869 142 0 29 chr6 16105970 16106280 -173173274 - AluJb SINE Alu -10 302 2 2644 149 97 166 chr6 16106280 16106629 -173172925 - L1MC3 LINE L1 -282 7503 7131 267 267 0 13 chr6 16106629 16106704 -173172850 - MLT1F1 LTR MaLR -453 114 41 2644 149 97 166 chr6 16106704 16107088 -173172466 - L1MC3 LINE L1 -654 7131 6759 2034 102 7 0 chr6 16107294 16107579 -173171975 - AluSp SINE Alu -15 298 12 28 29 0 0 chr6 16107834 16107869 -173171685 + AT_rich Low_complexity Low_complexity 1 35 0 1562 159 43 40 chr6 16107869 16108170 -173171384 + AluJo SINE Alu 1 302 -10 970 219 4 62 chr6 16108175 16108417 -173171137 - MIR SINE MIR -27 235 8 2409 44 14 3 chr6 16108543 16108840 -173170714 - AluY SINE Alu -11 300 1 1665 162 10 0 chr6 16109297 16109593 -173169961 + AluSx SINE Alu 1 299 -13 1827 140 3 3 chr6 16110292 16110578 -173168976 + AluJb SINE Alu 1 286 -26 2097 93 17 0 chr6 16110583 16110873 -173168681 - AluSg SINE Alu -15 295 1 200 152 0 0 chr6 16111316 16111349 -173168205 - MIR SINE MIR -63 145 113 465 193 111 117 chr6 16111619 16111790 -173167764 - MER5A DNA MER1_type -14 175 6 2172 147 18 33 chr6 16111879 16112275 -173167279 + MLT1B LTR MaLR 1 390 0 238 253 207 23 chr6 16112319 16112406 -173167148 + MIR SINE MIR 33 135 -73 2159 108 0 0 chr6 16112515 16112811 -173166743 + AluSx SINE Alu 1 296 -16 390 347 103 35 chr6 16112849 16113189 -173166365 + L1ME LINE L1 61 423 -5647 2568 100 34 78 chr6 16113298 16113395 -173166159 + MSTC LTR MaLR 1 101 -327 1901 151 0 3 chr6 16113395 16113694 -173165860 + AluSx SINE Alu 1 298 -14 2568 100 34 78 chr6 16113694 16114044 -173165510 + MSTC LTR MaLR 101 428 0 1707 205 81 10 chr6 16114214 16114623 -173164931 + Charlie4a DNA MER1_type 17 454 -54 2035 120 17 0 chr6 16114625 16114926 -173164628 - AluSx SINE Alu -6 306 1 4888 83 8 67 chr6 16115431 16115616 -173163938 + LTR8 LTR ERV1 1 195 -496 1872 132 0 0 chr6 16115616 16115888 -173163666 + AluSx SINE Alu 28 299 -13 4888 83 8 67 chr6 16115888 16116436 -173163118 + LTR8 LTR ERV1 195 691 0 237 74 37 19 chr6 16116631 16116685 -173162869 + (TTATA)n Simple_repeat Simple_repeat 1 55 0 197 298 39 96 chr6 16116761 16116865 -173162689 + MIR3 SINE MIR 96 193 -15 1591 137 0 12 chr6 16116959 16117250 -173162304 - AluSx SINE Alu 0 331 44 1542 93 9 9 chr6 16117268 16117493 -173162061 - AluSc SINE Alu -2 307 83 1876 132 4 4 chr6 16118134 16118415 -173161139 - AluSp SINE Alu -32 281 1 801 121 7 54 chr6 16118777 16118926 -173160628 + FLAM_C SINE Alu 2 143 0 971 149 54 6 chr6 16119389 16119557 -173159997 - AluSg/x SINE Alu -3 307 132 2294 92 3 0 chr6 16119557 16119861 -173159693 - AluSp SINE Alu -7 306 2 183 156 0 0 chr6 16120164 16120196 -173159358 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1106 153 6 0 chr6 16120198 16120375 -173159179 - AluJo SINE Alu -30 282 105 244 154 39 58 chr6 16120378 16120430 -173159124 + HSMAR1 DNA Mariner 1 51 -1236 672 147 0 0 chr6 16120436 16120538 -173159016 - AluJo SINE Alu -210 102 1 2322 169 4 50 chr6 16120605 16120963 -173158591 + L1M3 LINE L1 5369 5703 -480 2111 107 7 0 chr6 16120963 16121263 -173158291 + AluSq SINE Alu 1 302 -11 2322 169 4 50 chr6 16121263 16121361 -173158193 + L1M3 LINE L1 5703 5804 -379 2051 102 6 22 chr6 16121376 16121691 -173157863 + AluY SINE Alu 1 310 -1 488 241 106 0 chr6 16121933 16122074 -173157480 + MER3 DNA MER1_type 5 160 -49 1004 144 11 17 chr6 16122074 16122255 -173157299 - AluSg/x SINE Alu -3 307 128 276 171 0 0 chr6 16122657 16122698 -173156856 - FRAM/FAM SINE Alu -111 64 24 2079 104 3 3 chr6 16122709 16122998 -173156556 - AluSx SINE Alu -23 289 1 610 39 0 0 chr6 16123160 16123237 -173156317 - AluS SINE Alu -234 78 2 1690 120 34 8 chr6 16123737 16124003 -173155551 - AluSx SINE Alu 0 312 40 2120 97 3 3 chr6 16124013 16124312 -173155242 - AluY SINE Alu -12 299 1 1619 115 11 65 chr6 16124518 16124796 -173154758 + LTR48B LTR ERV1 1 263 -381 249 25 0 0 chr6 16124785 16124825 -173154729 + Alu SINE Alu 261 300 0 * 907 120 8 0 chr6 16124863 16124988 -173154566 - FLAM_C SINE Alu -3 130 5 2552 49 0 0 chr6 16125141 16125446 -173154108 + AluY SINE Alu 1 305 -6 2035 62 12 4 chr6 16125446 16125704 -173153850 + AluY SINE Alu 38 297 -14 227 224 0 0 chr6 16126002 16126051 -173153503 + L2 LINE L2 3224 3272 0 413 278 77 35 chr6 16127523 16127692 -173151862 + MER5A DNA MER1_type 7 182 -7 717 136 0 0 chr6 16127699 16127802 -173151752 + AluJo SINE Alu 2 104 -208 581 155 25 1 chr6 16127802 16127918 -173151636 + MER41A LTR ERV1 3 127 -427 23 0 0 0 chr6 16127999 16128022 -173151532 + AT_rich Low_complexity Low_complexity 1 23 0 32 26 0 0 chr6 16128038 16128077 -173151477 + AT_rich Low_complexity Low_complexity 1 39 0 2967 149 2 4 chr6 16128080 16128562 -173150992 + MER41B LTR ERV1 148 628 -7 812 212 20 10 chr6 16128562 16128765 -173150789 + AluJo SINE Alu 93 297 -15 265 222 111 71 chr6 16128930 16129029 -173150525 - MER5A DNA MER1_type -78 111 9 309 280 25 42 chr6 16129443 16129561 -173149993 - L2 LINE L2 -15 3257 3142 2316 87 7 0 chr6 16129920 16130229 -173149325 + AluSq SINE Alu 1 311 -2 24 0 0 0 chr6 16130264 16130288 -173149266 + AT_rich Low_complexity Low_complexity 1 24 0 1374 229 41 85 chr6 16130298 16130865 -173148689 - MER34 LTR ERV1 0 542 1 2166 227 66 43 chr6 16131217 16131790 -173147764 + Zaphod DNA AcHobo 185 779 -3252 2053 114 13 0 chr6 16131790 16132097 -173147457 - AluSx SINE Alu -1 311 1 2166 227 66 43 chr6 16132097 16132238 -173147316 + Zaphod DNA AcHobo 779 915 -3116 1538 150 24 0 chr6 16132238 16132484 -173147070 - Tigger2 DNA MER2_type 0 2718 2467 1476 74 0 15 chr6 16132543 16132746 -173146808 - AluY SINE Alu -109 202 3 280 237 26 0 chr6 16132855 16132931 -173146623 + GA-rich Low_complexity Low_complexity 1 78 0 1065 82 0 0 chr6 16133133 16133267 -173146287 + AluSq/x SINE Alu 1 134 -179 2009 99 10 7 chr6 16133269 16133563 -173145991 + AluSx SINE Alu 1 295 -17 289 293 196 0 chr6 16133951 16134084 -173145470 + MIR3 SINE MIR 41 199 -9 294 209 38 67 chr6 16134131 16134236 -173145318 + LTR48B LTR ERV1 1 102 -542 811 205 97 62 chr6 16134236 16134495 -173145059 + MER39 LTR ERV1 325 592 -115 828 138 0 22 chr6 16134495 16134633 -173144921 - FLAM_C SINE Alu -6 137 3 364 202 57 57 chr6 16134634 16134758 -173144796 + MER39 LTR ERV1 417 705 -2 2215 116 0 0 chr6 16135447 16135758 -173143796 + AluSq SINE Alu 1 311 -2 1919 113 55 0 chr6 16135983 16136276 -173143278 + AluSx SINE Alu 1 309 -3 1846 131 44 0 chr6 16136951 16137413 -173142141 + AluSx SINE Alu 1 475 0 2259 103 0 0 chr6 16138135 16138445 -173141109 + AluSx SINE Alu 3 312 0 227 143 71 36 chr6 16138659 16138715 -173140839 - MER20B DNA MER1_type -712 71 14 2286 89 0 3 chr6 16138798 16139101 -173140453 + AluSc SINE Alu 1 302 -7 1975 133 20 0 chr6 16139433 16139727 -173139827 - AluSx SINE Alu -12 300 1 803 57 0 9 chr6 16139802 16139907 -173139647 + AluSq/x SINE Alu 2 105 -207 967 165 21 0 chr6 16140106 16140294 -173139260 + AluSc SINE Alu 96 287 -22 1095 114 6 6 chr6 16140382 16140549 -173139005 + AluSc SINE Alu 128 294 -15 2014 122 0 41 chr6 16140616 16140751 -173138803 + AluSg SINE Alu 1 140 -170 2342 84 3 0 chr6 16140751 16141061 -173138493 + AluSp SINE Alu 1 311 -2 2014 122 0 41 chr6 16141061 16141245 -173138309 + AluSg SINE Alu 140 307 -3 1033 164 27 170 chr6 16141285 16141615 -173137939 - MLT1A1 LTR MaLR 0 365 83 3242 110 26 46 chr6 16141616 16141685 -173137869 + L1MB2 LINE L1 5631 5700 -471 1986 141 20 0 chr6 16141685 16141991 -173137563 - AluSx SINE Alu 0 312 1 3242 110 26 46 chr6 16141991 16142420 -173137134 + L1MB2 LINE L1 5700 6120 -51 2196 84 6 26 chr6 16142420 16142731 -173136823 + AluSx SINE Alu 1 305 -7 3242 110 26 46 chr6 16142731 16142776 -173136778 + L1MB2 LINE L1 6120 6164 -7 189 372 13 0 chr6 16142810 16142888 -173136666 - L2 LINE L2 -214 3058 2980 346 262 111 23 chr6 16143279 16143451 -173136103 + MER2 DNA MER2_type 159 345 0 189 0 0 0 chr6 16143772 16143793 -173135761 + (A)n Simple_repeat Simple_repeat 1 21 0 2234 145 60 0 chr6 16144018 16144398 -173135156 + MER57A LTR ERV1 1 403 0 1278 128 0 5 chr6 16144569 16144765 -173134789 - AluSg SINE Alu -2 308 114 2078 179 74 31 chr6 16144765 16145223 -173134331 - LTR2B LTR ERV1 0 490 13 576 97 269 0 chr6 16145228 16145321 -173134233 - AluSg SINE Alu -190 120 3 546 199 226 22 chr6 16145441 16145622 -173133932 - MIR SINE MIR -3 259 42 1553 224 23 11 chr6 16145622 16145970 -173133584 - MLT1C LTR MaLR 0 467 116 2138 101 13 0 chr6 16145970 16146276 -173133278 - AluSp SINE Alu -3 310 1 1350 195 3 69 chr6 16146294 16146628 -173132926 - AluJo SINE Alu 0 312 1 3477 182 15 24 chr6 16146638 16146931 -173132623 - L1MB4 LINE L1 -1 6179 5885 1967 99 49 0 chr6 16146931 16147215 -173132339 - AluSq SINE Alu -12 301 4 3477 182 15 24 chr6 16147215 16147635 -173131919 - L1MB4 LINE L1 -295 5885 5472 726 183 7 29 chr6 16147635 16147772 -173131782 - FLAM_C SINE Alu -8 135 2 1557 155 9 51 chr6 16147806 16148122 -173131432 + AluJo SINE Alu 1 303 -9 279 96 0 159 chr6 16148139 16148200 -173131354 - MLT1C LTR MaLR -265 125 80 1855 76 13 83 chr6 16148200 16148502 -173131052 - AluSp SINE Alu -32 281 1 279 96 0 159 chr6 16148502 16148517 -173131037 - MLT1C LTR MaLR -310 80 64 2291 104 0 0 chr6 16148738 16149047 -173130507 - AluSg SINE Alu -1 309 1 2052 109 27 0 chr6 16149864 16150158 -173129396 - AluSx SINE Alu -8 304 3 2063 75 0 0 chr6 16150247 16150513 -173129041 - AluSc SINE Alu -12 297 32 1641 135 49 118 chr6 16150557 16150988 -173128566 + MER57A LTR ERV1 3 403 0 813 198 169 21 chr6 16151171 16151255 -173128299 + AluJo SINE Alu 11 81 -231 2053 103 7 3 chr6 16151255 16151545 -173128009 - AluSp SINE Alu -22 291 1 813 198 169 21 chr6 16151545 16151564 -173127990 + AluJo SINE Alu 81 96 -216 216 0 0 0 chr6 16151564 16151588 -173127966 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 813 198 169 21 chr6 16151588 16151726 -173127828 + AluJo SINE Alu 96 289 -23 2070 132 0 13 chr6 16151881 16152191 -173127363 + AluJo SINE Alu 3 308 -4 313 270 131 7 chr6 16153200 16153338 -173126216 - MIR SINE MIR -80 128 18 2604 153 2 42 chr6 16154579 16154622 -173124932 - MER50 LTR ERV1 -25 709 666 2045 116 3 0 chr6 16154622 16154924 -173124630 - AluSx SINE Alu -9 303 1 2604 153 2 42 chr6 16154924 16155331 -173124223 - MER50 LTR ERV1 -68 666 277 1762 95 28 60 chr6 16155387 16155545 -173124009 - MER50 LTR ERV1 -459 275 127 1729 136 33 7 chr6 16155545 16155848 -173123706 - AluSc SINE Alu 0 310 1 1762 95 28 60 chr6 16155848 16155972 -173123582 - MER50 LTR ERV1 -607 127 1 294 194 0 0 chr6 16156805 16156877 -173122677 + (TG)n Simple_repeat Simple_repeat 2 73 0 1712 152 11 105 chr6 16156879 16157261 -173122293 - MER7A DNA MER2_type -1 345 2 398 313 65 13 chr6 16157277 16157507 -173122047 - L1MC4 LINE L1 -112 7930 7689 2266 98 7 0 chr6 16157660 16157965 -173121589 + AluSq SINE Alu 1 307 -6 194 281 0 94 chr6 16158230 16158295 -173121259 + L2 LINE L2 3227 3282 -31 2239 98 7 0 chr6 16158295 16158601 -173120953 + AluSx SINE Alu 3 310 -2 194 281 0 94 chr6 16158601 16158631 -173120923 + L2 LINE L2 3282 3313 0 315 0 0 0 chr6 16158732 16158767 -173120787 + (TA)n Simple_repeat Simple_repeat 1 35 0 1840 114 96 0 chr6 16159509 16159789 -173119765 - AluSg SINE Alu -3 307 1 23 33 0 0 chr6 16159848 16159878 -173119676 + AT_rich Low_complexity Low_complexity 1 30 0 780 200 7 7 chr6 16159878 16160023 -173119531 - FRAM SINE Alu -31 145 1 337 353 43 0 chr6 16161076 16161215 -173118339 + MIR SINE MIR 88 232 -30 415 156 0 0 chr6 16161241 16161305 -173118249 - MSTA LTR MaLR 0 428 365 580 167 0 0 chr6 16161305 16161395 -173118159 + AluJb SINE Alu 210 299 -13 581 250 0 9 chr6 16161407 16161567 -173117987 + FLAM_A SINE Alu 2 160 0 2703 138 40 26 chr6 16161587 16162046 -173117508 + L1MB2 LINE L1 5657 6125 -46 2106 105 7 0 chr6 16162046 16162342 -173117212 - AluSp SINE Alu -15 298 1 2703 138 40 26 chr6 16162342 16162376 -173117178 + L1MB2 LINE L1 6125 6157 -14 2153 105 0 13 chr6 16162512 16162818 -173116736 + AluSx SINE Alu 2 303 -9 24 103 0 0 chr6 16162864 16162951 -173116603 + AT_rich Low_complexity Low_complexity 1 87 0 1630 190 0 3 chr6 16163129 16163429 -173116125 - AluJb SINE Alu -13 299 1 209 256 227 64 chr6 16164664 16164836 -173114718 - L2 LINE L2 -13 3300 3101 745 145 0 0 chr6 16164942 16165059 -173114495 + FLAM_C SINE Alu 27 143 0 2028 123 3 0 chr6 16165072 16165365 -173114189 + AluSx SINE Alu 1 294 -18 820 206 50 0 chr6 16165378 16165558 -173113996 + AluSg/x SINE Alu 121 309 -1 795 271 48 0 chr6 16165578 16165829 -173113725 - MLT1J LTR MaLR -248 263 1 275 300 29 73 chr6 16166276 16166435 -173113119 + MIR SINE MIR 33 183 -77 1227 184 37 108 chr6 16166455 16166524 -173113030 - MLT1E3 LTR MaLR 0 624 552 2354 63 0 3 chr6 16166524 16166823 -173112731 + AluY SINE Alu 1 298 -13 1227 184 37 108 chr6 16166823 16166837 -173112717 - MLT1E3 LTR MaLR -72 552 539 1840 129 3 49 chr6 16166837 16167025 -173112529 - AluJb SINE Alu -1 311 143 2398 67 0 13 chr6 16167025 16167340 -173112214 - AluY SINE Alu 0 311 1 1840 129 3 49 chr6 16167340 16167477 -173112077 - AluJb SINE Alu -169 143 1 1227 184 37 108 chr6 16167477 16167745 -173111809 - MLT1E3 LTR MaLR -85 539 297 711 121 0 0 chr6 16167845 16167944 -173111610 + AluJ/FLAM SINE Alu 2 100 -212 393 253 149 32 chr6 16168006 16168160 -173111394 + MIR SINE MIR 20 191 -71 192 217 0 0 chr6 16168261 16168307 -173111247 + CT-rich Low_complexity Low_complexity 4 49 0 2635 94 0 121 chr6 16168356 16168440 -173111114 - Tigger2 DNA MER2_type -1 2717 2624 1714 170 0 3 chr6 16168440 16168734 -173110820 - AluJb SINE Alu -19 293 1 2635 94 0 121 chr6 16168734 16168746 -173110808 - Tigger2 DNA MER2_type -94 2624 2612 2066 105 3 3 chr6 16168746 16169042 -173110512 - AluSg SINE Alu -14 296 1 2635 94 0 121 chr6 16169042 16169341 -173110213 - Tigger2 DNA MER2_type -106 2612 2386 2288 76 0 10 chr6 16169341 16169655 -173109899 - AluY SINE Alu 0 311 1 2635 94 0 121 chr6 16169655 16169735 -173109819 - Tigger2 DNA MER2_type -332 2386 2298 490 100 0 14 chr6 16169741 16169811 -173109743 - Tigger2 DNA MER2_type -2649 69 1 1595 152 44 34 chr6 16170965 16171262 -173108292 - AluJo SINE Alu -11 301 2 667 229 0 0 chr6 16171345 16171463 -173108091 + FLAM_A SINE Alu 5 122 -11 2196 90 3 0 chr6 16171466 16171767 -173107787 - AluSq SINE Alu -11 302 1 27 0 0 0 chr6 16171767 16171794 -173107760 + AT_rich Low_complexity Low_complexity 1 27 0 340 247 60 73 chr6 16171957 16172107 -173107447 - MLT1J LTR MaLR 0 511 303 * 445 275 140 17 chr6 16172104 16172282 -173107272 - MLT1J LTR MaLR -311 200 1 412 329 71 6 chr6 16172400 16172570 -173106984 + MIR3 SINE MIR 18 198 -10 680 108 0 0 chr6 16172861 16172954 -173106600 - MER46B DNA MER2_type 0 236 144 349 126 78 6 chr6 16172954 16173121 -173106433 + (TA)n Simple_repeat Simple_repeat 1 179 0 1601 109 90 0 chr6 16173123 16173379 -173106175 - MER46B DNA MER2_type -82 154 1 378 100 0 33 chr6 16173331 16173391 -173106163 + MER46A DNA MER2_type 97 154 -82 * 1679 168 3 23 chr6 16173511 16173820 -173105734 - AluJo SINE Alu -9 303 1 283 86 0 0 chr6 16174130 16174165 -173105389 + U2 snRNA snRNA 1 35 -153 186 246 29 29 chr6 16174304 16174373 -173105181 - MIR SINE MIR -19 243 175 934 251 81 79 chr6 16174406 16174496 -173105058 + MLT1J LTR MaLR 17 105 -406 2127 90 0 14 chr6 16174496 16174819 -173104735 - AluSq SINE Alu 0 319 1 934 251 81 79 chr6 16174819 16175221 -173104333 + MLT1J LTR MaLR 105 511 0 1711 149 0 43 chr6 16175253 16175554 -173104000 + AluJo SINE Alu 1 288 -24 317 205 181 0 chr6 16175570 16175653 -173103901 - MIR SINE MIR -124 138 41 1952 132 3 7 chr6 16176631 16176926 -173102628 - AluSx SINE Alu -18 294 1 805 306 113 21 chr6 16176963 16177398 -173102156 + LTR33 LTR ERVL 40 514 -7 1837 107 28 77 chr6 16177569 16177707 -173101847 + AluSx SINE Alu 1 144 -168 1860 115 30 27 chr6 16177707 16178003 -173101551 + AluSx SINE Alu 3 299 -13 1837 107 28 77 chr6 16178003 16178191 -173101363 + AluSx SINE Alu 144 311 -1 2338 156 98 48 chr6 16179037 16179115 -173100439 + L1MB2 LINE L1 5587 5660 -511 2377 63 0 7 chr6 16179115 16179414 -173100140 + AluY SINE Alu 1 297 -14 2325 87 0 3 chr6 16179422 16179731 -173099823 + AluSg SINE Alu 1 308 -2 2338 156 98 48 chr6 16179731 16180052 -173099502 + L1MB2 LINE L1 5666 6029 -142 2151 125 30 25 chr6 16180052 16180419 -173099135 + L1PA14 LINE L1 5792 6160 -1 2338 156 98 48 chr6 16180419 16180527 -173099027 + L1MB2 LINE L1 6029 6130 -41 2197 109 0 10 chr6 16180533 16180845 -173098709 + AluSx SINE Alu 4 312 0 259 130 87 0 chr6 16180846 16180892 -173098662 + L1MB2 LINE L1 6115 6164 -7 249 269 192 0 chr6 16180902 16180980 -173098574 + MIR SINE MIR 159 251 -11 1256 194 51 75 chr6 16181154 16181526 -173098028 + MLT1A1 LTR MaLR 3 365 0 278 352 0 0 chr6 16181728 16181819 -173097735 - L2 LINE L2 0 3313 3223 2189 87 0 20 chr6 16181819 16182119 -173097435 + AluSq SINE Alu 1 294 -19 2141 103 0 10 chr6 16182442 16182742 -173096812 - AluSg SINE Alu -13 297 1 2156 94 3 3 chr6 16183282 16183580 -173095974 + AluSx SINE Alu 1 298 -14 367 95 108 27 chr6 16183994 16184068 -173095486 - MADE1 DNA Mariner 0 80 1 * 1054 171 87 66 chr6 16184066 16184088 -173095466 - MER33 DNA MER1_type -2278 307 287 1867 124 52 0 chr6 16184088 16184379 -173095175 - AluSq SINE Alu -7 306 1 1054 171 87 66 chr6 16184379 16184642 -173094912 - MER33 DNA MER1_type -2298 287 16 294 284 108 34 chr6 16184646 16184794 -173094760 + MIR3 SINE MIR 49 207 -1 333 208 104 66 chr6 16184871 16184977 -173094577 - L1ME4a LINE L1 -3 6118 6009 793 173 0 0 chr6 16184999 16185126 -173094428 + FLAM_A SINE Alu 1 127 -6 415 207 102 15 chr6 16186682 16186697 -173092857 - MLT1A2 LTR MaLR -232 158 146 2125 69 35 0 chr6 16186697 16186986 -173092568 + AluSx SINE Alu 1 299 -13 415 207 102 15 chr6 16186986 16187097 -173092457 - MLT1A2 LTR MaLR -244 146 42 246 279 36 36 chr6 16187097 16187208 -173092346 + MER34B LTR ERV1 5 115 -450 216 97 0 0 chr6 16187538 16187569 -173091985 + (TA)n Simple_repeat Simple_repeat 1 31 0 363 148 102 45 chr6 16187573 16187661 -173091893 + MER34 LTR ERV1 450 542 0 476 129 165 0 chr6 16188033 16188118 -173091436 + MER41C LTR ERV1 1 99 -455 2118 79 18 0 chr6 16188118 16188395 -173091159 - AluSq SINE Alu -2 311 30 1447 101 5 19 chr6 16188395 16188602 -173090952 - AluSx SINE Alu -108 204 1 3722 120 0 11 chr6 16188608 16189156 -173090398 + MER41B LTR ERV1 94 635 0 2008 115 10 22 chr6 16189481 16189795 -173089759 + AluSq SINE Alu 1 310 -3 356 0 23 0 chr6 16189852 16189896 -173089658 + (CA)n Simple_repeat Simple_repeat 1 45 0 242 222 0 19 chr6 16190602 16190656 -173088898 + CT-rich Low_complexity Low_complexity 5 57 0 836 178 24 24 chr6 16190959 16191128 -173088426 + MER20B DNA MER1_type 17 185 -34 2433 77 0 0 chr6 16191131 16191443 -173088111 + AluSx SINE Alu 1 312 0 2412 71 3 0 chr6 16191566 16191877 -173087677 + AluSq SINE Alu 2 313 0 230 248 173 45 chr6 16191954 16192087 -173087467 - MIR SINE MIR -82 180 31 2015 120 0 0 chr6 16192242 16192555 -173086999 + AluSc SINE Alu 1 309 0 2373 71 0 0 chr6 16192659 16192967 -173086587 + AluY SINE Alu 1 308 -3 1030 57 0 0 chr6 16192980 16193103 -173086451 + AluSq/x SINE Alu 1 123 -189 635 111 0 11 chr6 16193110 16193200 -173086354 + L1MD1 LINE L1 5504 5592 -767 1959 93 30 0 chr6 16193204 16193472 -173086082 + AluSg SINE Alu 1 276 -34 192 40 0 0 chr6 16193474 16193499 -173086055 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1198 174 0 43 chr6 16193525 16193760 -173085794 - AluJo SINE Alu -32 280 56 1955 188 38 46 chr6 16193763 16193800 -173085754 + L1MD1 LINE L1 5576 5612 -630 2028 119 0 13 chr6 16193800 16194102 -173085452 + AluSg SINE Alu 1 298 -12 1955 188 38 46 chr6 16194102 16194538 -173085016 + L1MD1 LINE L1 5612 6045 -197 1197 90 0 0 chr6 16194543 16194699 -173084855 + AluSg SINE Alu 49 204 -106 1039 187 36 0 chr6 16194700 16194919 -173084635 + L1MD1 LINE L1 6009 6235 -7 194 0 39 0 chr6 16194919 16194945 -173084609 + (TA)n Simple_repeat Simple_repeat 2 28 0 200 151 0 38 chr6 16194945 16194968 -173084586 + (TAGA)n Simple_repeat Simple_repeat 1 23 -28 2119 128 3 0 chr6 16194968 16195273 -173084281 + AluJo SINE Alu 1 306 -6 200 151 0 38 chr6 16195273 16195302 -173084252 + (TAGA)n Simple_repeat Simple_repeat 23 51 0 240 345 73 0 chr6 16196030 16196140 -173083414 - L2 LINE L2 -10 3262 3145 793 306 78 0 chr6 16196175 16196394 -173083160 + MIR SINE MIR 15 250 -12 881 217 116 98 chr6 16196481 16196838 -173082716 - MER4C LTR ERV1 0 695 156 1234 160 14 0 chr6 16196838 16197057 -173082497 + AluJb SINE Alu 84 305 -7 1220 148 3 172 chr6 16197062 16197446 -173082108 - MER4A LTR ERV1 -345 319 1 2403 52 0 16 chr6 16198205 16198513 -173081041 + AluY SINE Alu 1 303 -8 1780 173 0 6 chr6 16198744 16199056 -173080498 + AluJb SINE Alu 2 311 -1 5111 81 25 23 chr6 16199085 16199623 -173079931 - LTR8 LTR ERV1 0 691 150 2062 119 3 3 chr6 16199623 16199933 -173079621 + AluSx SINE Alu 1 310 -2 5111 81 25 23 chr6 16199933 16200084 -173079470 - LTR8 LTR ERV1 -541 150 1 297 241 35 11 chr6 16200451 16200538 -173079016 + GA-rich Low_complexity Low_complexity 5 93 0 820 218 33 90 chr6 16201435 16201604 -173077950 - MLT1B LTR MaLR -4 361 187 1200 181 52 38 chr6 16201604 16201892 -173077662 - AluJo SINE Alu -16 296 5 820 218 33 90 chr6 16201892 16202059 -173077495 - MLT1B LTR MaLR -178 187 12 1559 130 16 4 chr6 16202064 16202311 -173077243 - AluSq SINE Alu -63 250 1 3494 141 65 14 chr6 16202322 16202904 -173076650 - LTR9 LTR ERV1 0 612 1 693 161 0 9 chr6 16202918 16203030 -173076524 + AluJo/FLAM SINE Alu 9 119 -193 2102 123 0 0 chr6 16203032 16203325 -173076229 - AluSx SINE Alu -19 293 1 261 180 0 0 chr6 16203638 16203688 -173075866 + T-rich Low_complexity Low_complexity 1 50 0 196 255 0 0 chr6 16203790 16203841 -173075713 + L2 LINE L2 3263 3313 0 195 161 0 0 chr6 16204185 16204216 -173075338 - L2 LINE L2 -11 3261 3231 246 344 75 11 chr6 16204217 16204310 -173075244 - L2 LINE L2 -6 3307 3209 1621 183 0 22 chr6 16204493 16204805 -173074749 + AluJo SINE Alu 2 306 -6 2201 75 3 0 chr6 16204833 16205139 -173074415 + AluSp SINE Alu 1 307 0 659 188 0 0 chr6 16205139 16205256 -173074298 + AluSg/x SINE Alu 186 302 -10 302 239 14 0 chr6 16205878 16205949 -173073605 + MER116 DNA Mariner 5 76 -4 1049 156 0 0 chr6 16205997 16206164 -173073390 - FRAM SINE Alu -10 166 1 463 257 223 0 chr6 16206164 16206339 -173073215 - MIR SINE MIR -37 225 12 1714 152 14 3 chr6 16206603 16206893 -173072661 - AluJb SINE Alu -8 304 12 262 254 123 57 chr6 16207078 16207200 -173072354 - MIR SINE MIR -82 180 51 1889 139 20 3 chr6 16207954 16208249 -173071305 - AluJo SINE Alu -10 302 3 2063 116 3 19 chr6 16208386 16208704 -173070850 + AluSq SINE Alu 1 313 0 1711 147 0 0 chr6 16208989 16209254 -173070300 - AluSx SINE Alu -47 265 1 189 0 0 0 chr6 16209262 16209283 -173070271 + (T)n Simple_repeat Simple_repeat 1 21 0 718 172 16 0 chr6 16209295 16209417 -173070137 - FLAM_A SINE Alu -9 124 1 2137 104 10 0 chr6 16209497 16209795 -173069759 + AluSg SINE Alu 1 301 -9 1928 125 0 0 chr6 16209796 16210075 -173069479 - AluSx SINE Alu -31 281 3 435 261 72 31 chr6 16210090 16210285 -173069269 - MER113 DNA MER1_type? -209 312 110 278 290 139 16 chr6 16210287 16210532 -173069022 - L1MC5 LINE L1 -72 7889 7615 253 144 45 126 chr6 16210552 16210663 -173068891 - MER113 DNA MER1_type? -388 133 32 1315 86 0 0 chr6 16210720 16210894 -173068660 + AluSq SINE Alu 138 311 -2 2043 137 0 3 chr6 16210987 16211294 -173068260 + AluSx SINE Alu 1 306 -6 301 209 0 15 chr6 16211503 16211570 -173067984 - Tigger5 DNA MER2_type -16 2307 2242 * 435 200 0 0 chr6 16211560 16211635 -173067919 + Tigger5 DNA MER2_type 2242 2316 -7 369 157 129 0 chr6 16211638 16211708 -173067846 - Tigger5 DNA MER2_type -2244 79 1 518 305 14 7 chr6 16211791 16211932 -173067622 + MIR SINE MIR 26 167 -95 2136 113 0 3 chr6 16212247 16212547 -173067007 + AluSq SINE Alu 1 299 -14 326 224 0 0 chr6 16212742 16212809 -173066745 + MIR SINE MIR 196 262 0 251 169 15 46 chr6 16213119 16213184 -173066370 + LTR29 LTR ERV1 137 199 -423 * 1505 238 88 33 chr6 16213171 16213662 -173065892 + LTR48B LTR ERV1 91 608 -36 199 176 20 59 chr6 16214169 16214220 -173065334 - MIR3 SINE MIR 0 208 160 432 241 44 79 chr6 16214275 16214393 -173065161 + L1ME4a LINE L1 5576 5684 -437 2098 98 14 14 chr6 16214393 16214689 -173064865 - AluSx SINE Alu -16 296 1 432 241 44 79 chr6 16214689 16214798 -173064756 + L1ME4a LINE L1 5684 5795 -326 2036 117 0 0 chr6 16214842 16215124 -173064430 + AluSx SINE Alu 1 282 -30 227 236 75 38 chr6 16215315 16215421 -173064133 + L1ME4a LINE L1 6012 6121 0 1266 258 79 12 chr6 16215636 16216054 -173063500 + MLT1C LTR MaLR 22 467 0 888 158 48 0 chr6 16216179 16216325 -173063229 + AluJb SINE Alu 141 293 -19 2282 83 0 6 chr6 16216345 16216658 -173062896 + AluY SINE Alu 1 311 0 2133 65 8 0 chr6 16217466 16217728 -173061826 + HERVL LTR ERVL 4375 4638 -1016 2038 107 6 38 chr6 16218281 16218600 -173060954 - AluSx SINE Alu -3 309 1 234 0 0 0 chr6 16218600 16218626 -173060928 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 889 139 6 44 chr6 16218626 16218784 -173060770 - FRAM SINE Alu -29 147 1 2203 104 0 7 chr6 16219177 16219484 -173060070 + AluSx SINE Alu 1 305 -7 2039 127 0 0 chr6 16220645 16220944 -173058610 + AluSq SINE Alu 2 300 -13 494 76 25 0 chr6 16220946 16221025 -173058529 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 262 359 28 9 chr6 16221069 16221175 -173058379 + MIR SINE MIR 20 127 -81 8429 112 49 42 chr6 16221468 16222044 -173057510 - Tigger1 DNA MER2_type 0 2418 1848 2174 92 3 3 chr6 16222044 16222338 -173057216 + AluSg SINE Alu 1 294 -16 2152 122 3 0 chr6 16222348 16222659 -173056895 + AluSx SINE Alu 1 312 0 8429 112 49 42 chr6 16222659 16222767 -173056787 - Tigger1 DNA MER2_type -578 1840 1734 1721 139 51 14 chr6 16222767 16223061 -173056493 - AluSq SINE Alu -8 305 1 8429 112 49 42 chr6 16223061 16223771 -173055783 - Tigger1 DNA MER2_type -684 1734 1002 22 0 0 0 chr6 16223771 16223793 -173055761 + AT_rich Low_complexity Low_complexity 1 22 0 2155 128 0 0 chr6 16223835 16224184 -173055370 - AluSx SINE Alu 0 349 1 2148 98 0 25 chr6 16224203 16224521 -173055033 - AluSg SINE Alu 0 310 1 369 0 0 0 chr6 16224521 16224562 -173054992 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 236 224 0 0 chr6 16224605 16224654 -173054900 - Tigger1 DNA MER2_type -1407 1011 963 735 84 0 0 chr6 16224655 16224750 -173054804 + AluSp SINE Alu 2 96 -216 2073 87 35 0 chr6 16224750 16225039 -173054515 + AluSp SINE Alu 1 299 -14 1479 128 4 0 chr6 16225039 16225265 -173054289 + AluSp SINE Alu 82 309 -4 5674 128 15 81 chr6 16225268 16226046 -173053508 - Tigger1 DNA MER2_type -1448 970 143 1758 156 7 3 chr6 16226046 16226335 -173053219 + AluJb SINE Alu 1 290 -22 1993 106 3 11 chr6 16226342 16226624 -173052930 + AluSx SINE Alu 1 280 -32 222 23 45 45 chr6 16226625 16226669 -173052885 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 5674 128 15 81 chr6 16226669 16226861 -173052693 - Tigger1 DNA MER2_type -2281 137 59 180 0 0 0 chr6 16226861 16226881 -173052673 + (GA)n Simple_repeat Simple_repeat 2 21 0 5674 128 15 81 chr6 16226881 16226937 -173052617 - Tigger1 DNA MER2_type -2359 59 1 902 193 17 80 chr6 16227354 16227593 -173051961 - MLT1A2 LTR MaLR 0 374 151 655 169 14 68 chr6 16227599 16227747 -173051807 - L1PA16 LINE L1 -22 6144 6005 722 181 12 50 chr6 16227752 16227773 -173051781 - MLT1A2 LTR MaLR -211 154 134 1867 181 48 14 chr6 16227773 16228126 -173051428 - MLT1A1 LTR MaLR 0 365 1 722 181 12 50 chr6 16228126 16228264 -173051290 - MLT1A2 LTR MaLR -231 134 1 211 256 336 40 chr6 16228264 16228389 -173051165 - MIR SINE MIR -99 163 2 2015 138 0 3 chr6 16228442 16228754 -173050800 + AluSx SINE Alu 1 311 -1 2191 86 0 13 chr6 16228790 16229091 -173050463 + AluSq SINE Alu 1 297 -16 953 211 54 5 chr6 16229125 16229329 -173050225 - MLT1C LTR MaLR -61 406 193 2243 119 0 0 chr6 16229369 16229681 -173049873 - AluSx SINE Alu 0 312 1 535 292 149 14 chr6 16229844 16230132 -173049422 - L2 LINE L2 -3 3269 2943 2166 108 3 0 chr6 16230191 16230498 -173049056 - AluSx SINE Alu -4 308 1 1606 158 70 0 chr6 16230501 16230786 -173048768 - AluJb SINE Alu -7 305 1 583 289 62 9 chr6 16231281 16231506 -173048048 + MER46C DNA MER2_type 3 239 -99 1621 183 0 3 chr6 16231902 16232186 -173047368 + AluJb SINE Alu 2 284 -28 787 174 54 27 chr6 16232218 16232367 -173047187 - FRAM SINE Alu -23 153 1 183 317 92 49 chr6 16232376 16232540 -173047014 + MIR SINE MIR 28 198 -64 1779 149 13 19 chr6 16232696 16233004 -173046550 - AluSx SINE Alu -6 306 1 26 0 0 0 chr6 16233009 16233035 -173046519 + AT_rich Low_complexity Low_complexity 1 26 0 816 115 0 31 chr6 16233035 16233165 -173046389 - FLAM_C SINE Alu -17 126 1 2396 53 0 13 chr6 16233283 16233587 -173045967 + AluY SINE Alu 1 300 -11 898 92 59 59 chr6 16233738 16233890 -173045664 - THE1C LTR MaLR -223 152 1 184 300 17 33 chr6 16234166 16234226 -173045328 + MER5A DNA MER1_type 84 142 -47 838 283 25 18 chr6 16234869 16235134 -173044420 + L2 LINE L2 3031 3300 -13 222 118 0 0 chr6 16235134 16235168 -173044386 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 838 283 25 18 chr6 16235168 16235181 -173044373 + L2 LINE L2 3300 3311 -2 284 272 136 22 chr6 16235892 16236076 -173043478 + MLT1K LTR MaLR 316 520 -68 231 36 0 0 chr6 16236079 16236107 -173043447 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 1950 109 3 20 chr6 16236109 16236266 -173043288 - AluY SINE Alu -22 289 138 2440 57 0 13 chr6 16236266 16236581 -173042973 - AluY SINE Alu 0 311 1 1950 109 3 20 chr6 16236581 16236717 -173042837 - AluY SINE Alu -173 138 1 1834 140 18 0 chr6 16236723 16237009 -173042545 - AluSx SINE Alu -18 294 4 243 0 0 0 chr6 16237694 16237721 -173041833 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1979 132 6 28 chr6 16237725 16238043 -173041511 - AluSx SINE Alu -1 311 1 648 161 0 24 chr6 16238104 16238228 -173041326 - L1M1 LINE L1 -7431 134 14 2289 100 125 31 chr6 16238702 16239093 -173040461 + MSTA LTR MaLR 1 428 0 1029 275 123 37 chr6 16239093 16239639 -173039915 + MLT1L LTR MaLR 18 610 -5 331 184 103 11 chr6 16239654 16239741 -173039813 + MIR SINE MIR 158 252 -10 276 130 0 0 chr6 16240492 16240538 -173039016 + (CA)n Simple_repeat Simple_repeat 1 46 0 191 175 0 0 chr6 16241329 16241369 -173038185 + MIR SINE MIR 167 206 -56 348 153 0 111 chr6 16241465 16241537 -173038017 - AluJ/FLAM SINE Alu -238 64 1 2062 134 0 0 chr6 16241632 16241937 -173037617 - AluSx SINE Alu -7 305 1 1704 194 35 65 chr6 16243012 16243151 -173036403 - MLT1C LTR MaLR -6 461 319 3423 123 39 10 chr6 16243151 16243663 -173035891 - MER1A DNA MER1_type 0 527 1 1704 194 35 65 chr6 16243663 16243954 -173035600 - MLT1C LTR MaLR -148 319 43 1454 167 137 44 chr6 16243954 16244145 -173035409 - MLT1A2 LTR MaLR 0 374 202 2156 110 0 0 chr6 16244145 16244445 -173035109 + AluSx SINE Alu 1 300 -12 1454 167 137 44 chr6 16244445 16244595 -173034959 - MLT1A2 LTR MaLR -172 202 1 1704 194 35 65 chr6 16244595 16244621 -173034933 - MLT1C LTR MaLR -424 43 18 192 254 18 0 chr6 16245338 16245393 -173034161 - MIR SINE MIR -45 217 162 462 143 61 31 chr6 16245496 16245594 -173033960 + FLAM_A SINE Alu 27 127 -15 919 253 88 34 chr6 16245774 16246162 -173033392 + MLT1I LTR MaLR 1 409 0 1768 137 39 3 chr6 16246189 16246473 -173033081 - AluSx SINE Alu -18 294 1 286 267 19 38 chr6 16246829 16246934 -173032620 + MLT1K LTR MaLR 463 565 -23 1950 133 0 0 chr6 16246939 16247233 -173032321 - AluJb SINE Alu -5 307 14 2008 100 0 0 chr6 16247262 16247541 -173032013 + AluSx SINE Alu 34 312 0 1242 100 0 0 chr6 16247541 16247721 -173031833 + AluSg/x SINE Alu 131 310 -2 369 292 10 0 chr6 16247884 16247980 -173031574 - MIR3 SINE MIR -16 192 96 2399 72 3 0 chr6 16248704 16249009 -173030545 + AluSp SINE Alu 5 310 -3 2006 113 31 3 chr6 16249223 16249516 -173030038 + AluSx SINE Alu 1 301 -11 1863 157 0 3 chr6 16249781 16250087 -173029467 - AluJo SINE Alu -7 305 1 193 213 43 149 chr6 16250237 16250331 -173029223 + MIR SINE MIR 124 207 -55 198 0 0 0 chr6 16250502 16250524 -173029030 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 245 255 0 0 chr6 16250524 16250575 -173028979 - FLAM SINE Alu -17 116 66 2454 53 0 0 chr6 16250575 16250874 -173028680 + AluY SINE Alu 1 299 -12 1327 183 0 27 chr6 16250885 16251142 -173028412 - AluJo SINE Alu -62 250 1 2254 96 3 6 chr6 16251620 16251934 -173027620 - AluSp SINE Alu 0 313 1 2048 133 0 0 chr6 16251940 16252249 -173027305 - AluSx SINE Alu -3 309 1 1465 112 70 0 chr6 16252362 16252576 -173026978 + MER30 DNA MER1_type 1 229 -1 764 204 46 20 chr6 16252619 16252771 -173026783 + FRAM SINE Alu 1 156 -10 1591 101 86 34 chr6 16252803 16253250 -173026304 + AluSx SINE Alu 1 461 0 546 216 19 91 chr6 16253332 16253540 -173026014 + L1MD1 LINE L1 6035 6227 -15 1427 171 80 0 chr6 16253545 16253819 -173025735 + AluJb SINE Alu 1 296 -16 212 128 0 85 chr6 16253942 16253989 -173025565 + L2 LINE L2 3271 3313 0 2167 121 0 0 chr6 16254032 16254338 -173025216 + AluSc SINE Alu 1 306 -3 2071 131 0 0 chr6 16254343 16254648 -173024906 + AluSq SINE Alu 1 305 -8 746 223 146 5 chr6 16254650 16254870 -173024684 + MIR SINE MIR 12 262 0 1687 266 93 26 chr6 16255010 16255481 -173024073 - MLT1G1 LTR MaLR 0 595 84 1925 142 0 7 chr6 16255481 16255784 -173023770 - AluSx SINE Alu -11 301 1 1687 266 93 26 chr6 16255784 16255839 -173023715 - MLT1G1 LTR MaLR -511 84 34 796 139 9 0 chr6 16255839 16255954 -173023600 + MER74A LTR ERVL 1 116 -442 446 315 61 6 chr6 16256307 16256472 -173023082 - MIR3 SINE MIR -16 192 19 1915 138 40 0 chr6 16256680 16256978 -173022576 - AluSx SINE Alu 0 312 3 2148 109 6 6 chr6 16256992 16257304 -173022250 - AluSq SINE Alu -1 312 1 244 150 25 25 chr6 16257680 16257760 -173021794 + GA-rich Low_complexity Low_complexity 2 81 0 1182 128 0 0 chr6 16259470 16259649 -173019905 - AluSq SINE Alu 0 313 135 1747 166 0 10 chr6 16259689 16259996 -173019558 + AluJo SINE Alu 1 304 -8 322 299 111 14 chr6 16260001 16260145 -173019409 - MIR SINE MIR -14 248 91 2058 109 0 54 chr6 16260172 16260485 -173019069 - AluSx SINE Alu -16 296 1 2285 79 3 0 chr6 16260528 16260818 -173018736 - AluSp SINE Alu -18 295 5 230 261 114 23 chr6 16261191 16261279 -173018275 + LTR48B LTR ERV1 1 96 -548 * 1028 220 40 40 chr6 16261271 16261571 -173017983 + MER39 LTR ERV1 312 611 -96 1277 199 17 51 chr6 16261573 16261710 -173017844 + AluJo SINE Alu 1 141 -171 198 0 0 0 chr6 16261710 16261732 -173017822 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1277 199 17 51 chr6 16261732 16261886 -173017668 + AluJo SINE Alu 141 282 -30 2281 98 0 0 chr6 16261888 16262185 -173017369 - AluSx SINE Alu -13 299 3 28 0 0 0 chr6 16262197 16262225 -173017329 + AT_rich Low_complexity Low_complexity 1 28 0 2215 80 0 7 chr6 16262225 16262525 -173017029 + AluY SINE Alu 2 299 -12 2338 92 0 6 chr6 16262837 16263152 -173016402 + AluSq SINE Alu 1 313 0 312 206 205 12 chr6 16263155 16263270 -173016284 + MIR SINE MIR 46 181 -65 231 352 167 19 chr6 16263606 16263768 -173015786 - MIR SINE MIR -56 206 21 2227 60 0 7 chr6 16263842 16264155 -173015399 - AluY SINE Alu 0 311 1 2135 112 0 3 chr6 16264861 16265165 -173014389 + AluSx SINE Alu 1 303 -9 2061 78 60 0 chr6 16265172 16265453 -173014101 + AluSg SINE Alu 1 298 -12 497 228 0 88 chr6 16266031 16266086 -173013468 + MIR SINE MIR 96 154 -108 2162 113 0 0 chr6 16266086 16266388 -173013166 + AluSx SINE Alu 1 302 -10 497 228 0 88 chr6 16266388 16266468 -173013086 + MIR SINE MIR 154 219 -43 1801 113 22 7 chr6 16266599 16266874 -173012680 + AluSx SINE Alu 11 289 -23 27 62 0 0 chr6 16266874 16266922 -173012632 + AT_rich Low_complexity Low_complexity 1 48 0 1748 164 10 0 chr6 16267136 16267428 -173012126 + AluJo SINE Alu 1 295 -17 2211 68 0 42 chr6 16267605 16267912 -173011642 - AluY SINE Alu -17 294 1 257 236 0 90 chr6 16268026 16268073 -173011481 + L1ME4a LINE L1 5583 5620 -501 2267 89 0 7 chr6 16268073 16268377 -173011177 - AluSg SINE Alu -8 302 1 257 236 0 90 chr6 16268377 16268418 -173011136 + L1ME4a LINE L1 5620 5663 -458 277 236 97 42 chr6 16268497 16268641 -173010913 + L1ME4a LINE L1 5778 5929 -192 25 31 0 0 chr6 16268641 16268673 -173010881 + AT_rich Low_complexity Low_complexity 1 32 0 985 70 8 0 chr6 16268680 16268808 -173010746 - AluY SINE Alu -181 130 2 337 228 149 53 chr6 16268834 16268919 -173010635 + L1ME4a LINE L1 5959 6059 -62 2266 99 3 0 chr6 16268919 16269221 -173010333 - AluSx SINE Alu -9 303 1 337 228 149 53 chr6 16269221 16269249 -173010305 + L1ME4a LINE L1 6059 6083 -38 1908 214 85 26 chr6 16269251 16269891 -173009663 - L1ME2 LINE L1 -8 6162 5452 1197 162 0 50 chr6 16269905 16270127 -173009427 - AluJb SINE Alu -15 297 87 1800 98 44 63 chr6 16270166 16270481 -173009073 - AluSx SINE Alu -3 309 1 712 123 0 15 chr6 16270483 16270613 -173008941 + (TTTC)n Simple_repeat Simple_repeat 2 129 0 2052 134 0 0 chr6 16270618 16270924 -173008630 + AluSx SINE Alu 3 308 -4 1243 168 34 71 chr6 16270963 16271116 -173008438 - AluJo SINE Alu -18 294 156 2110 111 0 3 chr6 16271116 16271404 -173008150 - AluSg SINE Alu -19 291 5 1243 168 34 71 chr6 16271404 16271547 -173008007 - AluJo SINE Alu -156 156 9 1721 146 56 0 chr6 16271645 16271818 -173007736 - AluSg SINE Alu -7 303 106 234 0 0 0 chr6 16271818 16271844 -173007710 + (TA)n Simple_repeat Simple_repeat 2 27 0 1721 146 56 0 chr6 16271844 16271957 -173007597 - AluSg SINE Alu -204 106 1 267 235 0 0 chr6 16272787 16272855 -173006699 - L1ME2 LINE L1 -767 5395 5328 2076 181 57 75 chr6 16273219 16273783 -173005771 - MLT2B3 LTR ERVL 0 554 1 2019 113 0 45 chr6 16273866 16274176 -173005378 - AluSg SINE Alu -14 296 1 630 323 16 16 chr6 16274238 16274430 -173005124 - L2 LINE L2 0 3272 3081 27 49 0 0 chr6 16274494 16274535 -173005019 + AT_rich Low_complexity Low_complexity 1 41 0 2085 125 3 0 chr6 16274654 16274950 -173004604 - AluSx SINE Alu -15 297 1 540 100 0 0 chr6 16276951 16277031 -173002523 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 238 200 150 0 chr6 16278308 16278388 -173001166 - L1MC4 LINE L1 -1337 6705 6614 333 258 21 43 chr6 16278428 16278521 -173001033 + L1MC4 LINE L1 6614 6704 -1338 187 155 0 69 chr6 16278522 16278580 -173000974 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 235 150 0 0 chr6 16278582 16278622 -173000932 - L1MC4 LINE L1 -1341 6701 6662 1917 120 0 11 chr6 16278749 16279058 -173000496 - AluY SINE Alu 0 306 1 2065 122 3 0 chr6 16279058 16279353 -173000201 - AluSq SINE Alu -16 297 2 385 230 14 74 chr6 16279754 16279902 -172999652 + Charlie7 DNA MER1_type 1 139 -2473 1384 200 48 3 chr6 16280070 16280365 -172999189 + AluJb SINE Alu 5 312 0 213 65 0 0 chr6 16280365 16280396 -172999158 + (GA)n Simple_repeat Simple_repeat 1 31 0 567 0 0 0 chr6 16280396 16280459 -172999095 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 776 173 8 8 chr6 16280478 16280611 -172998943 + FLAM_C SINE Alu 1 133 0 1472 101 0 18 chr6 16280828 16281046 -172998508 - AluSx SINE Alu -96 216 3 669 143 9 194 chr6 16281082 16281134 -172998420 - MER33 DNA MER1_type -2298 326 266 1953 118 0 67 chr6 16281134 16281448 -172998106 + AluSx SINE Alu 3 295 -17 669 143 9 194 chr6 16281448 16281566 -172997988 - MER33 DNA MER1_type -2358 266 128 1576 139 95 7 chr6 16281566 16281839 -172997715 + 7SLRNA srpRNA srpRNA 15 311 -9 669 143 9 194 chr6 16281839 16281859 -172997695 - MER33 DNA MER1_type -2496 128 106 1810 156 0 0 chr6 16281859 16282141 -172997413 + AluJo SINE Alu 1 282 -30 324 0 0 0 chr6 16282141 16282177 -172997377 + (TA)n Simple_repeat Simple_repeat 2 37 0 669 143 9 194 chr6 16282177 16282333 -172997221 - MER33 DNA MER1_type -2516 108 3 1721 156 7 20 chr6 16282570 16282872 -172996682 + AluJb SINE Alu 1 298 -14 498 197 27 122 chr6 16282902 16283020 -172996534 - MIR SINE MIR -87 175 79 1875 117 7 4 chr6 16283020 16283330 -172996224 + AluSx SINE Alu 8 318 0 498 197 27 122 chr6 16283330 16283398 -172996156 - MIR SINE MIR -183 79 6 2585 154 66 59 chr6 16283490 16283553 -172996001 + LTR26B LTR ERV1 1 62 -469 2073 114 0 3 chr6 16283553 16283850 -172995704 + AluSx SINE Alu 1 296 -16 2585 154 66 59 chr6 16283850 16284313 -172995241 + LTR26B LTR ERV1 62 531 0 2154 106 0 0 chr6 16284871 16285163 -172994391 - AluSq SINE Alu -21 292 1 22 0 0 0 chr6 16285321 16285343 -172994211 + AT_rich Low_complexity Low_complexity 1 22 0 1346 162 13 87 chr6 16286100 16286241 -172993313 + AluJo SINE Alu 1 109 -203 1603 195 0 0 chr6 16286241 16286545 -172993009 + AluJb SINE Alu 1 304 0 1346 162 13 87 chr6 16286545 16286711 -172992843 + AluJo SINE Alu 109 286 -26 25 0 0 0 chr6 16287437 16287462 -172992092 + AT_rich Low_complexity Low_complexity 1 25 0 1399 12 6 6 chr6 16287464 16287629 -172991925 - L1PA3 LINE L1 0 6155 5991 804 128 21 57 chr6 16287651 16287792 -172991762 - FLAM_C SINE Alu -6 137 2 2165 100 0 0 chr6 16288144 16288434 -172991120 - AluSq SINE Alu -23 290 1 23 78 0 0 chr6 16288657 16288708 -172990846 + AT_rich Low_complexity Low_complexity 1 51 0 187 295 175 12 chr6 16288809 16288962 -172990592 + MIR SINE MIR 20 208 -54 624 198 48 0 chr6 16288999 16289125 -172990429 + AluJo SINE Alu 39 170 -142 2289 88 3 3 chr6 16289179 16289487 -172990067 + AluSp SINE Alu 3 310 -3 724 164 0 36 chr6 16290206 16290346 -172989208 - FRAM SINE Alu 0 40 1 829 215 0 36 chr6 16290521 16290716 -172988838 - AluSg/x SINE Alu -7 305 118 786 304 11 8 chr6 16290721 16290984 -172988570 - L1ME4a LINE L1 -247 5874 5611 2256 100 49 31 chr6 16291005 16291154 -172988400 + THE1A LTR MaLR 1 146 -209 2026 118 3 0 chr6 16291154 16291458 -172988096 - AluSq SINE Alu -8 305 1 2256 100 49 31 chr6 16291458 16291657 -172987897 + THE1A LTR MaLR 146 355 0 432 103 0 0 chr6 16291953 16292021 -172987533 - L1PB3 LINE L1 0 6154 6087 2103 106 10 0 chr6 16292044 16292336 -172987218 - AluSq SINE Alu -18 295 1 966 108 36 209 chr6 16292552 16292631 -172986923 + MER30 DNA MER1_type 1 92 -138 1836 153 3 0 chr6 16292631 16292918 -172986636 + AluSx SINE Alu 1 288 -24 1931 115 11 0 chr6 16292928 16293215 -172986339 + AluSq SINE Alu 1 290 -23 966 108 36 209 chr6 16293215 16293402 -172986152 + MER30 DNA MER1_type 102 230 0 1393 165 76 3 chr6 16293441 16293732 -172985822 + AluJo SINE Alu 1 312 0 494 69 0 14 chr6 16293732 16293804 -172985750 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 1127 71 0 33 chr6 16293804 16293988 -172985566 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2432 58 3 7 chr6 16294321 16294631 -172984923 - AluSc SINE Alu 0 309 1 1555 192 3 42 chr6 16294642 16294950 -172984604 - AluJo SINE Alu -2 300 5 1888 53 0 16 chr6 16294969 16295212 -172984342 + AluY SINE Alu 57 295 -16 1064 99 6 17 chr6 16295216 16295397 -172984157 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 240 111 0 0 chr6 16295397 16295433 -172984121 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 2179 99 7 3 chr6 16295433 16295737 -172983817 - AluSx SINE Alu -3 309 5 1864 140 7 3 chr6 16295767 16296059 -172983495 + AluSq SINE Alu 1 293 -20 1837 135 0 43 chr6 16296144 16296282 -172983272 + AluJb SINE Alu 1 143 -190 2252 92 3 3 chr6 16296282 16296588 -172982966 + AluSp SINE Alu 1 306 -7 1837 135 0 43 chr6 16296588 16296796 -172982758 + AluJb SINE Alu 143 333 0 3682 105 39 60 chr6 16297075 16297324 -172982230 + MER39B LTR ERV1 1 254 -399 2211 115 0 3 chr6 16297324 16297636 -172981918 + AluSq SINE Alu 1 311 -2 3682 105 39 60 chr6 16297636 16297883 -172981671 + MER39B LTR ERV1 254 482 -171 2212 102 0 3 chr6 16297883 16298186 -172981368 + AluSx SINE Alu 1 302 -10 3682 105 39 60 chr6 16298186 16298355 -172981199 + MER39B LTR ERV1 482 653 0 227 182 36 18 chr6 16298791 16298846 -172980708 + MIR SINE MIR 96 151 -111 2095 129 0 0 chr6 16299014 16299317 -172980237 + AluSx SINE Alu 1 303 -9 1222 196 0 0 chr6 16299329 16299579 -172979975 + L1MA4 LINE L1 6049 6298 -2 2258 97 0 0 chr6 16299587 16299885 -172979669 + AluSx SINE Alu 1 298 -14 832 118 0 59 chr6 16299886 16300022 -172979532 + FLAM_C SINE Alu 1 128 -5 306 143 0 0 chr6 16300213 16300276 -172979278 + (TC)n Simple_repeat Simple_repeat 2 64 0 282 29 0 0 chr6 16300276 16300311 -172979243 + (CA)n Simple_repeat Simple_repeat 1 35 0 259 395 35 23 chr6 16300825 16300997 -172978557 - MIR3 SINE MIR -15 193 20 196 274 129 0 chr6 16301028 16301090 -172978464 - L2 LINE L2 0 3313 3244 28 0 0 0 chr6 16302440 16302468 -172977086 + AT_rich Low_complexity Low_complexity 1 28 0 1517 126 72 47 chr6 16302524 16302802 -172976752 - AluJb SINE Alu -27 285 1 275 238 0 0 chr6 16302988 16303051 -172976503 + L1MA8 LINE L1 6181 6243 -48 269 309 12 12 chr6 16303419 16303503 -172976051 - MIR3 SINE MIR -30 178 95 202 288 54 72 chr6 16303474 16303585 -172975969 + MIR3 SINE MIR 85 193 -15 * 2220 88 7 0 chr6 16304401 16304698 -172974856 + AluSx SINE Alu 1 299 -13 1749 161 0 10 chr6 16305366 16305670 -172973884 - AluJb SINE Alu -11 301 1 2282 94 3 3 chr6 16306185 16306494 -172973060 + AluSc SINE Alu 1 309 0 229 253 274 11 chr6 16306800 16306895 -172972659 - MER5A DNA MER1_type 0 189 70 2231 90 0 16 chr6 16306916 16307228 -172972326 - AluSq SINE Alu -6 307 1 2249 81 0 3 chr6 16307793 16308090 -172971464 - AluSg SINE Alu -14 296 1 392 374 61 9 chr6 16308111 16308325 -172971229 - MIR SINE MIR -7 255 31 923 128 0 0 chr6 16308616 16308749 -172970805 - FLAM_C SINE Alu 0 133 1 2349 93 0 0 chr6 16308816 16309126 -172970428 + AluSx SINE Alu 1 310 -2 1285 208 39 108 chr6 16309187 16309595 -172969959 - MSTD LTR MaLR 0 396 17 1715 170 0 20 chr6 16309660 16309960 -172969594 + AluJb SINE Alu 1 294 -18 1959 155 0 0 chr6 16310228 16310538 -172969016 - AluSx SINE Alu -2 310 1 912 132 0 0 chr6 16310538 16310674 -172968880 - AluSq/x SINE Alu -176 136 1 254 301 165 8 chr6 16310675 16310808 -172968746 + MIR SINE MIR 96 249 -13 1504 180 14 4 chr6 16310861 16311159 -172968395 - AluJb SINE Alu 0 301 1 30 0 0 0 chr6 16311321 16311351 -172968203 + AT_rich Low_complexity Low_complexity 1 30 0 496 208 21 10 chr6 16312167 16312263 -172967291 + MER5A DNA MER1_type 16 112 -77 326 275 191 15 chr6 16312196 16312327 -172967227 - MER5A DNA MER1_type -32 157 4 * 328 164 0 0 chr6 16312587 16312642 -172966912 + AluJ SINE Alu 87 141 -161 2061 114 7 3 chr6 16312646 16313131 -172966423 + AluSc SINE Alu 1 308 -1 1043 117 11 6 chr6 16312923 16313182 -172966372 + (GAAA)n Simple_repeat Simple_repeat 1 440 0 919 179 13 0 chr6 16313182 16313338 -172966216 + AluJ SINE Alu 129 286 -26 538 178 59 20 chr6 16313344 16313445 -172966109 - AluJb SINE Alu -25 287 183 1719 150 21 28 chr6 16313445 16313735 -172965819 + AluJb SINE Alu 14 298 -14 23 0 0 0 chr6 16313741 16313764 -172965790 + AT_rich Low_complexity Low_complexity 1 23 0 872 57 0 0 chr6 16314010 16314115 -172965439 + AluY SINE Alu 1 105 -206 2243 108 7 0 chr6 16314724 16315021 -172964533 + AluSp SINE Alu 1 299 -14 1265 114 0 0 chr6 16315021 16315188 -172964366 + AluSq SINE Alu 135 301 -12 2316 101 0 0 chr6 16315387 16315685 -172963869 - AluSq SINE Alu -15 298 1 460 98 0 98 chr6 16315688 16315770 -172963784 - U3 snRNA snRNA -143 74 1 1972 142 30 0 chr6 16315788 16315967 -172963587 - AluJo SINE Alu -1 311 139 2241 109 6 10 chr6 16315967 16316280 -172963274 - AluSx SINE Alu 0 312 1 203 79 26 0 chr6 16316284 16316322 -172963232 + (TTTTA)n Simple_repeat Simple_repeat 5 43 0 1972 142 30 0 chr6 16316322 16316439 -172963115 - AluJo SINE Alu -175 137 1 1671 125 0 0 chr6 16317827 16318051 -172961503 - AluSx SINE Alu -88 224 1 2292 92 0 3 chr6 16318258 16318584 -172960970 - AluSg SINE Alu 0 325 1 305 0 50 0 chr6 16318586 16318626 -172960928 + (TTTTA)n Simple_repeat Simple_repeat 4 45 0 1511 196 11 25 chr6 16318626 16318912 -172960642 - AluJo SINE Alu -30 282 1 185 200 50 0 chr6 16319159 16319199 -172960355 + MIR SINE MIR 81 122 -140 886 118 0 37 chr6 16319235 16319371 -172960183 + FLAM_C SINE Alu 1 131 -2 2023 96 4 0 chr6 16319404 16319664 -172959890 - AluSc SINE Alu -12 297 37 566 85 0 64 chr6 16319664 16319758 -172959796 + FLAM_A SINE Alu 51 138 -4 2168 115 3 7 chr6 16320266 16320562 -172958992 + AluSq SINE Alu 1 295 -18 2330 98 3 0 chr6 16320566 16320862 -172958692 + AluSp SINE Alu 1 297 -16 237 254 17 0 chr6 16320916 16320975 -172958579 + L1MC/D LINE L1 5574 5633 -2175 2430 94 0 0 chr6 16321004 16321303 -172958251 - AluSg SINE Alu -9 301 3 1498 109 5 0 chr6 16321858 16322060 -172957494 + AluSp SINE Alu 2 204 -109 2137 108 3 16 chr6 16322416 16322723 -172956831 + AluSx SINE Alu 5 307 -5 401 0 20 0 chr6 16322871 16322920 -172956634 + (TG)n Simple_repeat Simple_repeat 2 51 0 780 169 0 0 chr6 16322929 16323059 -172956495 - FLAM_C SINE Alu -2 131 2 2205 125 0 0 chr6 16323196 16323492 -172956062 + AluSc SINE Alu 1 296 -13 1976 191 22 37 chr6 16323623 16323775 -172955779 + MSTD LTR MaLR 1 154 -242 1844 159 11 0 chr6 16323775 16324058 -172955496 - AluJb SINE Alu -20 292 7 1976 191 22 37 chr6 16324058 16324234 -172955320 + MSTD LTR MaLR 154 325 -71 1988 118 37 0 chr6 16324234 16324535 -172955019 - AluSx SINE Alu 0 311 1 1976 191 22 37 chr6 16324535 16324606 -172954948 + MSTD LTR MaLR 325 396 0 801 186 0 0 chr6 16324701 16324825 -172954729 + FRAM SINE Alu 23 146 -30 2170 107 4 0 chr6 16324827 16325154 -172954400 - AluSq SINE Alu 0 328 1 1450 159 63 22 chr6 16326050 16326321 -172953233 - AluJb SINE Alu -30 282 1 655 162 0 8 chr6 16326379 16326496 -172953058 + FLAM_C SINE Alu 24 139 -4 1911 127 33 4 chr6 16326747 16327023 -172952531 - AluSx SINE Alu -28 284 1 1797 167 3 28 chr6 16327116 16327434 -172952120 + AluJb SINE Alu 2 311 -1 242 265 29 0 chr6 16327485 16327553 -172952001 - LTR16A LTR ERVL 0 450 381 1960 130 40 7 chr6 16327566 16327866 -172951688 + AluSq SINE Alu 1 310 -3 566 155 0 10 chr6 16327884 16327981 -172951573 + AluJb SINE Alu 206 301 -11 976 164 0 0 chr6 16327982 16328128 -172951426 - AluJo SINE Alu -30 282 137 739 273 90 60 chr6 16328261 16328561 -172950993 - MLT1G1 LTR MaLR -250 345 37 2114 101 6 52 chr6 16328632 16328959 -172950595 - AluSx SINE Alu 0 312 1 888 134 0 15 chr6 16328959 16329093 -172950461 - AluJo SINE Alu -178 134 3 2126 107 11 0 chr6 16330579 16330629 -172948925 + AluSg SINE Alu 1 49 -260 198 0 0 0 chr6 16330629 16330651 -172948903 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 2126 107 11 0 chr6 16330651 16330906 -172948648 + AluSg SINE Alu 49 309 0 2199 115 0 0 chr6 16331093 16331388 -172948166 - AluSx SINE Alu -17 295 1 2184 102 3 0 chr6 16331605 16331898 -172947656 + AluSq SINE Alu 1 294 -19 200 145 145 48 chr6 16331967 16332029 -172947525 - MIR SINE MIR -109 153 86 730 181 0 22 chr6 16332181 16332319 -172947235 - FLAM_C SINE Alu -4 139 5 2611 62 0 0 chr6 16332347 16332652 -172946902 + AluY SINE Alu 2 306 -5 1881 155 0 23 chr6 16332858 16333168 -172946386 - AluJb SINE Alu -9 303 1 2374 77 3 3 chr6 16333253 16333602 -172945952 + AluSp SINE Alu 1 349 0 1822 167 14 0 chr6 16333739 16334027 -172945527 - AluSx SINE Alu -20 292 1 2258 100 0 32 chr6 16334083 16334393 -172945161 - AluSx SINE Alu 0 312 13 23 0 0 0 chr6 16334393 16334416 -172945138 + AT_rich Low_complexity Low_complexity 1 23 0 2165 125 3 28 chr6 16335229 16335548 -172944006 - AluSx SINE Alu -1 311 1 1151 194 0 37 chr6 16335664 16335880 -172943674 + AluJb SINE Alu 87 294 -18 2171 116 7 10 chr6 16336130 16336440 -172943114 - AluSx SINE Alu -3 309 1 2240 103 0 30 chr6 16337107 16337408 -172942146 + AluSg SINE Alu 1 292 -18 2170 119 0 0 chr6 16337464 16337750 -172941804 + AluSq SINE Alu 1 286 -27 195 42 0 0 chr6 16337753 16337777 -172941777 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 210 338 52 13 chr6 16337840 16337917 -172941637 - L2 LINE L2 0 3272 3193 884 113 0 23 chr6 16337918 16338051 -172941503 + FLAM_C SINE Alu 1 130 -3 332 307 35 0 chr6 16338103 16338217 -172941337 + MIR SINE MIR 47 164 -98 247 281 56 0 chr6 16338294 16338383 -172941171 - MIR SINE MIR -11 251 158 412 302 31 8 chr6 16338666 16338795 -172940759 - MIR SINE MIR -103 159 28 530 231 28 66 chr6 16340606 16340892 -172938662 - L1MC5 LINE L1 -36 7925 7651 1713 174 3 3 chr6 16340907 16341189 -172938365 + AluJb SINE Alu 1 282 -30 2137 112 3 22 chr6 16341204 16341517 -172938037 + AluSg SINE Alu 1 307 -3 2366 89 0 3 chr6 16341520 16341851 -172937703 + AluY SINE Alu 1 311 0 1257 116 0 0 chr6 16341851 16342015 -172937539 + AluSg/x SINE Alu 132 295 -15 1888 162 3 3 chr6 16342028 16342342 -172937212 + L1MB3 LINE L1 5828 6141 -42 2317 74 27 3 chr6 16342342 16342639 -172936915 + AluSp SINE Alu 1 304 -9 2472 84 0 0 chr6 16342651 16342949 -172936605 + AluSq SINE Alu 1 298 -15 1245 128 11 0 chr6 16342964 16343144 -172936410 + AluSg/x SINE Alu 125 306 -6 636 260 113 40 chr6 16343209 16343476 -172936078 - L1MC5 LINE L1 -302 7659 7360 1766 141 22 59 chr6 16343476 16343796 -172935758 - AluSx SINE Alu 0 312 5 636 260 113 40 chr6 16343796 16343874 -172935680 - L1MC5 LINE L1 -601 7360 7289 1207 148 0 95 chr6 16344057 16344300 -172935254 - AluJb SINE Alu -6 306 87 2085 105 0 24 chr6 16344404 16344698 -172934856 + AluSx SINE Alu 1 287 -25 477 196 50 33 chr6 16345221 16345371 -172934183 + L1MC5 LINE L1 7786 7995 0 347 235 0 0 chr6 16345482 16345550 -172934004 + MIR SINE MIR 81 148 -60 2172 92 0 18 chr6 16346085 16346368 -172933186 + AluY SINE Alu 2 279 -32 318 26 0 0 chr6 16346370 16346409 -172933145 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2228 113 0 0 chr6 16346421 16346714 -172932840 + AluSx SINE Alu 1 293 -19 2099 119 17 7 chr6 16346725 16347018 -172932536 + AluSx SINE Alu 1 296 -16 27 0 0 0 chr6 16347021 16347048 -172932506 + AT_rich Low_complexity Low_complexity 1 27 0 1621 137 10 48 chr6 16347048 16347295 -172932259 - L1MB3 LINE L1 -261 5922 5667 2039 113 13 19 chr6 16347295 16347606 -172931948 + AluSc SINE Alu 1 309 0 2184 102 48 0 chr6 16347613 16347907 -172931647 + AluSx SINE Alu 1 308 -4 1621 137 10 48 chr6 16347907 16347943 -172931611 - L1MB3 LINE L1 -522 5661 5642 2106 125 0 0 chr6 16348235 16348514 -172931040 + AluSx SINE Alu 18 296 -16 288 111 0 0 chr6 16348526 16348571 -172930983 + (CA)n Simple_repeat Simple_repeat 2 46 0 766 153 0 62 chr6 16348575 16348719 -172930835 - AluJo SINE Alu -176 136 2 1861 180 0 0 chr6 16348728 16349033 -172930521 - AluJo SINE Alu -7 305 1 2424 74 0 3 chr6 16349456 16349755 -172929799 + AluY SINE Alu 1 298 -13 2164 111 0 10 chr6 16349851 16350148 -172929406 - AluSx SINE Alu -16 296 3 216 67 0 0 chr6 16350214 16350244 -172929310 + (TG)n Simple_repeat Simple_repeat 2 31 0 2233 106 0 3 chr6 16350448 16350750 -172928804 + AluSx SINE Alu 1 301 -11 295 185 25 6 chr6 16351958 16352115 -172927439 + (TA)n Simple_repeat Simple_repeat 2 161 0 2342 104 3 13 chr6 16352566 16352882 -172926672 + AluSp SINE Alu 1 313 0 725 229 96 0 chr6 16352948 16353105 -172926449 + Tigger3(Golem) DNA MER2_type 1 172 -2857 4725 164 34 15 chr6 16353108 16353980 -172925574 + Tigger3(Golem) DNA MER2_type 2141 3029 0 198 224 0 0 chr6 16354096 16354145 -172925409 + CT-rich Low_complexity Low_complexity 84 132 0 234 0 0 0 chr6 16354307 16354333 -172925221 + (TA)n Simple_repeat Simple_repeat 2 27 0 392 269 37 0 chr6 16354769 16354903 -172924651 - MIR SINE MIR 0 262 124 215 348 35 9 chr6 16355031 16355146 -172924408 + MIR SINE MIR 37 154 -108 257 296 25 0 chr6 16356775 16356856 -172922698 - L2 LINE L2 -5 3267 3185 253 65 0 109 chr6 16357630 16357676 -172921878 + U2 snRNA snRNA 4 44 -144 514 130 150 0 chr6 16357804 16357904 -172921650 + MER5B DNA MER1_type 44 158 -20 349 148 35 25 chr6 16357904 16358232 -172921322 + (TA)n Simple_repeat Simple_repeat 1 331 0 1645 174 0 14 chr6 16358248 16358524 -172921030 - AluJo SINE Alu -26 286 15 1617 245 72 2 chr6 16359657 16359924 -172919630 - MLT1C LTR MaLR 0 467 157 279 93 0 0 chr6 16359924 16359967 -172919587 + (TG)n Simple_repeat Simple_repeat 2 44 0 1617 245 72 2 chr6 16359967 16360131 -172919423 - MLT1C LTR MaLR -310 157 6 206 331 80 37 chr6 16361333 16361496 -172918058 - MIR SINE MIR -71 191 22 2790 70 117 2 chr6 16361624 16362026 -172917528 - LTR7 LTR ERV1 -2 448 1 203 325 39 0 chr6 16362319 16362396 -172917158 - L2 LINE L2 -372 2942 2863 326 266 75 50 chr6 16363314 16363474 -172916080 - L1ME4a LINE L1 -184 5937 5768 370 298 96 0 chr6 16363474 16363578 -172915976 + MER81 DNA DNA 1 114 0 326 266 75 50 chr6 16363578 16363658 -172915896 - L1ME4a LINE L1 -353 5768 5691 401 264 28 9 chr6 16363841 16363947 -172915607 + MLT1C LTR MaLR 1 108 -359 2049 138 0 0 chr6 16363958 16364243 -172915311 + AluSx SINE Alu 1 304 -8 213 83 0 28 chr6 16364243 16364279 -172915275 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 841 139 8 0 chr6 16364290 16364419 -172915135 + AluSg/x SINE Alu 152 316 0 229 86 0 0 chr6 16364419 16364454 -172915100 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 943 171 0 0 chr6 16364456 16364597 -172914957 + AluSg/x SINE Alu 140 330 0 451 0 0 0 chr6 16364597 16364647 -172914907 + (TAAAA)n Simple_repeat Simple_repeat 5 55 0 657 186 115 148 chr6 16364664 16365003 -172914551 + MLT1C LTR MaLR 132 459 -8 2269 89 0 10 chr6 16365207 16365509 -172914045 + AluY SINE Alu 3 301 -10 219 88 0 0 chr6 16365738 16365772 -172913782 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 604 217 26 0 chr6 16365772 16365887 -172913667 - FLAM_C SINE Alu -21 122 5 5946 57 13 16 chr6 16365954 16366708 -172912846 - SVA Other Other 0 1386 635 2270 91 17 0 chr6 16367734 16368032 -172911522 + AluSx SINE Alu 1 303 -9 1035 70 8 0 chr6 16368143 16368271 -172911283 + AluY SINE Alu 2 130 -181 32 26 0 0 chr6 16368271 16368310 -172911244 + AT_rich Low_complexity Low_complexity 1 39 0 296 236 97 42 chr6 16368310 16368454 -172911100 - L1ME4a LINE L1 -192 5929 5778 2251 96 10 7 chr6 16368574 16368875 -172910679 + AluSg SINE Alu 1 302 -8 1982 154 0 3 chr6 16369142 16369447 -172910107 - AluJo SINE Alu -8 304 1 519 161 4 1 chr6 16369593 16369680 -172909874 - MLT1B LTR MaLR -304 86 1 770 191 8 0 chr6 16369764 16369890 -172909664 + AluJo/FLAM SINE Alu 1 127 -185 2103 125 0 0 chr6 16369891 16370186 -172909368 - AluY SINE Alu -16 295 1 503 233 112 0 chr6 16370192 16370308 -172909246 - FLAM_A SINE Alu -4 129 1 1040 204 0 45 chr6 16370545 16370704 -172908850 - AluJo SINE Alu -20 292 144 2163 110 0 7 chr6 16370704 16370995 -172908559 - AluSg1 SINE Alu -18 291 3 1040 204 0 45 chr6 16370995 16371056 -172908498 - AluJo SINE Alu -168 144 82 2397 94 3 0 chr6 16371070 16371379 -172908175 - AluSp SINE Alu -3 310 1 2131 138 0 3 chr6 16371415 16371727 -172907827 - AluSx SINE Alu -1 311 1 206 244 24 44 chr6 16371780 16371905 -172907649 + MIR SINE MIR 2 163 -99 729 181 12 50 chr6 16371905 16372043 -172907511 + MLT1A2 LTR MaLR 1 134 -231 1975 179 48 14 chr6 16372043 16372396 -172907158 + MLT1A1 LTR MaLR 1 365 0 729 181 12 50 chr6 16372396 16372417 -172907137 + MLT1A2 LTR MaLR 134 154 -211 654 169 14 68 chr6 16372422 16372570 -172906984 + L1PA16 LINE L1 6005 6144 -22 911 193 17 80 chr6 16372576 16372815 -172906739 + MLT1A2 LTR MaLR 151 374 0 1164 127 0 123 chr6 16373231 16373491 -172906063 + Tigger1 DNA MER2_type 1 228 -2190 222 23 45 45 chr6 16373499 16373543 -172906011 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 1994 121 4 7 chr6 16373544 16373825 -172905729 - AluSx SINE Alu -32 280 1 378 0 0 0 chr6 16374019 16374061 -172905493 + (CA)n Simple_repeat Simple_repeat 1 42 0 394 299 65 52 chr6 16374062 16374557 -172904997 + L1MEd LINE L1 714 1214 -4905 332 309 32 32 chr6 16374645 16374821 -172904733 + L1MEd LINE L1 1254 1429 -1061 590 307 14 37 chr6 16374821 16375036 -172904518 + MER63A DNA MER1_type 1 210 0 332 309 32 32 chr6 16375036 16375138 -172904416 + L1MEd LINE L1 1428 1626 -864 183 80 0 0 chr6 16375140 16375165 -172904389 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 477 322 20 14 chr6 16375962 16376307 -172903247 + L1MEd LINE L1 2186 2532 -3597 21 82 0 0 chr6 16376375 16376424 -172903130 + AT_rich Low_complexity Low_complexity 1 49 0 263 288 50 97 chr6 16376544 16376947 -172902607 + HAL1 LINE L1 2038 2421 -86 243 146 0 0 chr6 16377702 16377743 -172901811 + (CA)n Simple_repeat Simple_repeat 1 41 0 236 259 0 17 chr6 16377760 16377818 -172901736 - AluSp SINE Alu -118 185 129 289 362 31 26 chr6 16377836 16378065 -172901489 + L2 LINE L2 2674 2903 -411 458 103 0 0 chr6 16379044 16379112 -172900442 - L1PB3 LINE L1 0 6154 6087 2168 106 10 3 chr6 16379135 16379428 -172900126 - AluSq SINE Alu -18 295 1 621 77 0 0 chr6 16379644 16379722 -172899832 + MER30B DNA MER1_type 1 78 -112 967 130 0 0 chr6 16379723 16379854 -172899700 + FLAM_C SINE Alu 1 131 -2 324 373 70 10 chr6 16380146 16380347 -172899207 + MIR SINE MIR 31 243 -19 2330 91 0 3 chr6 16380380 16380677 -172898877 + AluSg SINE Alu 1 296 -14 1050 171 13 46 chr6 16380965 16381223 -172898331 + AluSg/x SINE Alu 79 344 -333 2256 131 0 0 chr6 16381223 16381535 -172898019 + AluSx SINE Alu 1 312 0 1050 171 13 46 chr6 16381535 16381572 -172897982 + AluSg/x SINE Alu 344 677 0 22 0 0 0 chr6 16381614 16381636 -172897918 + AT_rich Low_complexity Low_complexity 1 22 0 4417 104 60 41 chr6 16381636 16382347 -172897207 + Tigger1 DNA MER2_type 1002 1726 -692 2154 112 0 10 chr6 16382347 16382642 -172896912 + AluSq SINE Alu 1 292 -21 2444 175 76 17 chr6 16383198 16383660 -172895894 - LTR26B LTR ERV1 0 531 43 2145 113 0 3 chr6 16383661 16383952 -172895602 - AluSx SINE Alu -16 296 7 27 29 0 0 chr6 16384098 16384132 -172895422 + AT_rich Low_complexity Low_complexity 1 34 0 182 358 62 42 chr6 16384428 16384454 -172895100 - MIR SINE MIR -9 253 229 2319 110 3 0 chr6 16384454 16384763 -172894791 - AluSg SINE Alu 0 310 1 182 358 62 42 chr6 16384763 16384929 -172894625 - MIR SINE MIR -33 229 57 284 279 35 12 chr6 16384952 16385038 -172894516 + MIR3 SINE MIR 121 208 0 24 0 8 0 chr6 16385116 16385179 -172894375 + AT_rich Low_complexity Low_complexity 1 24 0 376 314 105 34 chr6 16385574 16385813 -172893741 + MIR SINE MIR 3 258 -4 443 63 16 0 chr6 16385859 16385922 -172893632 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 957 211 226 43 chr6 16386143 16386631 -172892923 + MER39 LTR ERV1 1 642 -65 2278 114 3 0 chr6 16386631 16386930 -172892624 - AluSg SINE Alu -10 300 1 957 211 226 43 chr6 16386930 16387011 -172892543 + MER39 LTR ERV1 642 707 0 2181 67 7 7 chr6 16387233 16387544 -172892010 - AluY SINE Alu 0 311 1 2356 93 3 0 chr6 16388251 16388561 -172890993 + AluSx SINE Alu 1 311 -1 334 196 0 0 chr6 16388569 16388625 -172890929 - MLT2D LTR ERVL -351 63 8 213 214 0 0 chr6 16388625 16388667 -172890887 + CT-rich Low_complexity Low_complexity 1 42 0 182 330 48 19 chr6 16388874 16388977 -172890577 + MIR SINE MIR 146 251 -11 195 319 14 14 chr6 16389003 16389072 -172890482 + L2 LINE L2 3013 3081 -232 285 51 0 0 chr6 16389494 16389533 -172890021 + (CA)n Simple_repeat Simple_repeat 2 40 0 234 220 0 20 chr6 16389878 16389928 -172889626 + Charlie4 DNA MER1_type 1178 1226 -735 272 342 103 0 chr6 16390306 16390423 -172889131 - L2 LINE L2 -5 3267 3139 319 262 178 19 chr6 16393268 16393375 -172886179 - MER58A DNA MER1_type 0 125 2 198 278 42 56 chr6 16394451 16394523 -172885031 + MIR SINE MIR 29 99 -163 323 23 23 0 chr6 16394856 16394900 -172884654 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 306 228 19 0 chr6 16394902 16395060 -172884494 + (TA)n Simple_repeat Simple_repeat 2 162 0 1908 182 58 11 chr6 16395110 16395472 -172884082 + MER57A LTR ERV1 1 379 -24 306 262 71 0 chr6 16395507 16395591 -172883963 - L1MC4 LINE L1 -1339 6703 6614 25 0 0 0 chr6 16396755 16396780 -172882774 + AT_rich Low_complexity Low_complexity 1 25 0 219 211 42 42 chr6 16398302 16398373 -172881181 - L2 LINE L2 -99 3214 3144 186 143 0 0 chr6 16398431 16398466 -172881088 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 298 343 73 11 chr6 16399131 16399309 -172880245 + MIR SINE MIR 1 189 -73 312 326 20 0 chr6 16399392 16399490 -172880064 + MIR SINE MIR 133 232 -30 2021 113 13 19 chr6 16399678 16399989 -172879565 - AluSc SINE Alu 0 309 1 1540 146 12 0 chr6 16399990 16400236 -172879318 + L1MB3 LINE L1 5674 5922 -261 27 0 0 0 chr6 16400236 16400263 -172879291 + AT_rich Low_complexity Low_complexity 1 27 0 2085 119 17 7 chr6 16400266 16400559 -172878995 - AluSx SINE Alu -16 296 1 2213 113 0 0 chr6 16400570 16400863 -172878691 - AluSx SINE Alu -19 293 1 390 21 0 0 chr6 16400875 16400922 -172878632 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2212 86 4 0 chr6 16400924 16401202 -172878352 - AluY SINE Alu -32 279 1 25 51 0 0 chr6 16401687 16401726 -172877828 + AT_rich Low_complexity Low_complexity 1 39 0 2043 118 7 7 chr6 16401763 16402052 -172877502 - AluSx SINE Alu -22 290 2 342 223 27 88 chr6 16402453 16402601 -172876953 + Charlie7 DNA MER1_type 1 139 -2473 728 176 9 0 chr6 16402769 16402877 -172876677 + AluSq/x SINE Alu 5 113 -199 2190 96 7 13 chr6 16403866 16404169 -172875385 - AluSg SINE Alu -9 301 1 2394 87 3 0 chr6 16404175 16404475 -172875079 - AluSp SINE Alu -12 301 1 472 286 44 28 chr6 16404722 16404904 -172874650 + MIR SINE MIR 34 218 -44 865 150 7 29 chr6 16405148 16405288 -172874266 - AluJo SINE Alu -175 137 1 240 318 12 12 chr6 16405289 16405374 -172874180 - MIR SINE MIR -57 151 67 1798 143 13 54 chr6 16405501 16405815 -172873739 - AluJb SINE Alu -11 301 1 308 256 190 0 chr6 16406757 16406878 -172872676 + MER5B DNA MER1_type 19 162 -16 377 367 23 6 chr6 16407207 16407384 -172872170 - MIR SINE MIR -33 229 50 265 304 21 34 chr6 16407607 16407747 -172871807 + MIR SINE MIR 13 150 -77 245 329 101 32 chr6 16408637 16408795 -172870759 - MIR SINE MIR -73 189 21 325 319 112 0 chr6 16409403 16409572 -172869982 - MIR SINE MIR -1 261 74 239 281 0 24 chr6 16409576 16409658 -172869896 - MIR SINE MIR 0 262 183 * 535 261 99 94 chr6 16409652 16409813 -172869741 - L2 LINE L2 0 3313 3154 2182 123 7 0 chr6 16409813 16410122 -172869432 - AluSq SINE Alu 0 313 3 535 261 99 94 chr6 16410122 16410374 -172869180 - L2 LINE L2 -159 3154 2898 221 353 110 7 chr6 16410433 16410569 -172868985 + MIR SINE MIR 5 154 -108 287 336 0 29 chr6 16410723 16410827 -172868727 - MIR SINE MIR -78 130 30 1860 128 13 56 chr6 16411391 16411696 -172867858 - AluSg SINE Alu -4 306 15 3752 130 26 45 chr6 16411710 16412354 -172867200 - MER41-int LTR ERV1 -3343 2603 1972 3591 129 95 82 chr6 16412354 16413709 -172865845 + pTR5 LTR ERV1 66 2438 0 1268 151 9 24 chr6 16413709 16414026 -172865528 - MER41-int LTR ERV1 -3971 1975 1560 26 0 0 0 chr6 16414429 16414455 -172865099 + AT_rich Low_complexity Low_complexity 1 26 0 2135 83 29 4 chr6 16414700 16414977 -172864577 - AluSx SINE Alu -28 284 1 463 240 219 28 chr6 16415245 16415528 -172864026 - MLT1J LTR MaLR -170 341 5 2077 129 0 0 chr6 16415922 16416202 -172863352 + AluSq SINE Alu 2 281 -32 460 62 15 0 chr6 16416202 16416267 -172863287 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 1074 183 9 27 chr6 16416422 16416646 -172862908 + AluJo SINE Alu 85 304 -8 2776 177 52 21 chr6 16416646 16417166 -172862388 + MER21A LTR ERV1 396 931 0 1715 146 3 75 chr6 16417189 16417325 -172862229 + AluSq SINE Alu 1 145 -168 2116 91 13 38 chr6 16417325 16417643 -172861911 + AluY SINE Alu 1 310 -1 1715 146 3 75 chr6 16417643 16417827 -172861727 + AluSq SINE Alu 145 298 -15 910 158 35 23 chr6 16417832 16418003 -172861551 + FRAM SINE Alu 1 166 -10 187 258 113 16 chr6 16418356 16418418 -172861136 + L2 LINE L2 3205 3272 0 603 129 11 21 chr6 16418420 16418513 -172861041 + AluJ/FLAM SINE Alu 2 93 -219 2220 100 7 7 chr6 16418514 16418823 -172860731 + AluSx SINE Alu 2 310 -2 367 268 147 29 chr6 16418860 16419079 -172860475 - MIR SINE MIR 0 262 24 2096 134 0 0 chr6 16419235 16419534 -172860020 + AluSx SINE Alu 1 299 -13 993 199 0 32 chr6 16419614 16419800 -172859754 - AluSq SINE Alu 0 313 134 1006 181 0 0 chr6 16419800 16419971 -172859583 - AluSg/x SINE Alu -6 306 136 1790 220 22 18 chr6 16420098 16420856 -172858698 + L1M3 LINE L1 4851 5613 -567 907 259 38 0 chr6 16420849 16421111 -172858443 + L1M4 LINE L1 4047 4318 -1828 * 1419 258 42 22 chr6 16421115 16421708 -172857846 + L1M4 LINE L1 4217 4821 -1325 1634 168 32 70 chr6 16421739 16422108 -172857446 + LTR1B LTR ERV1 1 355 -471 22 35 0 0 chr6 16422224 16422253 -172857301 + AT_rich Low_complexity Low_complexity 1 29 0 242 0 61 0 chr6 16422477 16422510 -172857044 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 445 275 123 55 chr6 16423262 16423571 -172855983 - MLT1K LTR MaLR -2 586 257 254 300 73 36 chr6 16424317 16424427 -172855127 + L2 LINE L2 3186 3299 -14 1529 153 66 4 chr6 16424428 16424702 -172854852 - MSTA LTR MaLR -130 298 8 286 294 8 87 chr6 16424746 16424872 -172854682 + L2 LINE L2 3174 3289 -24 24 67 0 0 chr6 16425213 16425258 -172854296 + AT_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr6 16425436 16425469 -172854085 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr6 16426113 16426142 -172853412 + AT_rich Low_complexity Low_complexity 1 29 0 4831 166 23 6 chr6 16476457 16477333 -172802221 + L1MA8 LINE L1 5400 6290 -1 296 277 81 20 chr6 16477431 16477579 -172801975 - MIR SINE MIR -51 211 55 30 0 0 0 chr6 16477711 16477741 -172801813 + AT_rich Low_complexity Low_complexity 1 30 0 1607 263 114 59 chr6 16477766 16478436 -172801118 - HAL1 LINE L1 -1260 1247 486 944 173 12 0 chr6 16478436 16478598 -172800956 - U1 snRNA snRNA 0 165 2 1607 263 114 59 chr6 16478598 16479079 -172800475 - HAL1 LINE L1 -2021 486 33 873 150 0 58 chr6 16479595 16479768 -172799786 + pTR5 LTR ERV1 743 905 -1533 275 280 25 32 chr6 16480120 16480415 -172799139 - L1MC/D LINE L1 -743 5403 5191 * 3693 168 84 27 chr6 16480410 16480474 -172799080 - L1MC3 LINE L1 -1 7784 7725 2042 186 19 6 chr6 16480474 16480834 -172798720 + MLT1A1 LTR MaLR 1 365 0 3693 168 84 27 chr6 16480834 16481589 -172797965 - L1MC3 LINE L1 -60 7725 6918 395 343 68 19 chr6 16481770 16482094 -172797460 - L1MC/D LINE L1 -1143 5003 4664 430 192 34 20 chr6 16482162 16482308 -172797246 + CT-rich Low_complexity Low_complexity 3 150 0 337 307 173 41 chr6 16482325 16482719 -172796835 - L1MC/D LINE L1 -1587 4559 4114 1916 200 36 53 chr6 16482720 16483325 -172796229 - L1MC/D LINE L1 -3269 2877 2283 234 265 110 22 chr6 16483470 16483606 -172795948 + Charlie2b DNA MER1_type 168 315 -2467 2466 59 7 16 chr6 16483614 16483921 -172795633 + AluY SINE Alu 1 304 -7 255 264 55 0 chr6 16483921 16484012 -172795542 + Charlie2b DNA MER1_type 560 655 -2127 873 169 44 0 chr6 16484112 16484295 -172795259 + Charlie2a DNA MER1_type 1476 1666 -1196 280 265 51 0 chr6 16484300 16484398 -172795156 + Charlie2a DNA MER1_type 2716 2818 -44 255 243 1 32 chr6 16484399 16484505 -172795049 + L1ME LINE L1 5738 5841 -329 782 282 53 70 chr6 16484567 16485021 -172794533 - L2 LINE L2 -16 3297 2852 2301 266 76 28 chr6 16485410 16486523 -172793031 + L1M4 LINE L1 3573 4739 -1407 1754 119 32 0 chr6 16486524 16486775 -172792779 + AluY SINE Alu 1 259 -52 356 365 55 38 chr6 16487227 16487411 -172792143 + L1MEd LINE L1 616 808 -5397 225 0 0 0 chr6 16487411 16487436 -172792118 + (CA)n Simple_repeat Simple_repeat 2 26 0 356 365 55 38 chr6 16487436 16487541 -172792013 + L1MEd LINE L1 808 910 -5295 1154 311 25 28 chr6 16487544 16487940 -172791614 - LTR16C LTR ERVL -8 483 89 39 0 0 0 chr6 16488042 16488081 -172791473 + AT_rich Low_complexity Low_complexity 1 39 0 317 254 100 43 chr6 16488186 16488428 -172791126 + L1MEd LINE L1 1463 1767 -809 235 368 0 0 chr6 16488482 16488558 -172790996 + MER58 DNA MER1_type 1 76 -139 619 250 23 0 chr6 16488559 16488731 -172790823 - L1MC2 LINE L1 -3 6341 6166 205 224 0 26 chr6 16488734 16488810 -172790744 + (CATA)n Simple_repeat Simple_repeat 4 77 0 239 214 29 14 chr6 16488823 16488893 -172790661 - L1M4 LINE L1 -3691 2455 2385 1059 205 84 16 chr6 16488993 16489242 -172790312 + MLT1A1 LTR MaLR 100 365 0 423 317 70 7 chr6 16489636 16489778 -172789776 - LTR33 LTR ERVL -123 398 248 24 32 0 0 chr6 16489813 16489844 -172789710 + AT_rich Low_complexity Low_complexity 1 31 0 1110 305 80 70 chr6 16490091 16490339 -172789215 + L2 LINE L2 2219 2463 -850 2216 122 20 0 chr6 16490339 16490642 -172788912 - AluSx SINE Alu -3 309 1 1110 305 80 70 chr6 16490642 16491457 -172788097 + L2 LINE L2 2463 3313 0 3668 80 2 20 chr6 16492044 16492102 -172787452 - MER41A LTR ERV1 -63 491 433 2437 82 0 3 chr6 16492102 16492407 -172787147 + AluSp SINE Alu 1 304 -9 3668 80 2 20 chr6 16492407 16492848 -172786706 - MER41A LTR ERV1 -121 433 1 1155 229 20 0 chr6 16492926 16493175 -172786379 - AluJb SINE Alu -1 311 58 258 224 118 26 chr6 16493193 16493269 -172786285 - MLT1L LTR MaLR -327 288 206 * 261 295 77 39 chr6 16493247 16493403 -172786151 - MLT1J LTR MaLR -348 163 2 238 186 80 53 chr6 16493403 16493516 -172786038 - L2 LINE L2 -1226 2088 1973 705 122 9 9 chr6 16493516 16493631 -172785923 + FLAM_C SINE Alu 25 139 -4 1770 151 0 18 chr6 16493654 16493938 -172785616 + AluSq SINE Alu 29 307 -6 342 247 22 116 chr6 16493944 16494158 -172785396 - L2 LINE L2 -1321 1993 1807 2413 73 20 0 chr6 16494158 16494458 -172785096 - AluY SINE Alu -5 306 1 342 247 22 116 chr6 16494458 16494510 -172785044 - L2 LINE L2 -1507 1807 1752 573 281 81 5 chr6 16494642 16494867 -172784687 + MIR SINE MIR 9 250 -12 2150 96 7 7 chr6 16495459 16495752 -172783802 + AluSq SINE Alu 1 293 -20 2313 101 0 0 chr6 16495832 16496130 -172783424 + AluSg SINE Alu 1 298 -12 571 249 36 18 chr6 16496219 16496384 -172783170 + MIR SINE MIR 21 188 -74 515 163 0 0 chr6 16496618 16496728 -172782826 - AluJb SINE Alu 0 312 203 408 56 42 56 chr6 16496804 16496852 -172782702 - MLT1B LTR MaLR -2 388 341 1288 208 26 58 chr6 16496852 16497160 -172782394 - AluJo SINE Alu -14 298 1 2313 73 3 17 chr6 16497166 16497478 -172782076 - AluSp SINE Alu 0 308 1 408 56 42 56 chr6 16497478 16497492 -172782062 - MLT1B LTR MaLR -54 336 319 183 206 37 19 chr6 16497567 16497674 -172781880 + GA-rich Low_complexity Low_complexity 2 110 0 4839 84 14 50 chr6 16497706 16497797 -172781757 - LTR8 LTR ERV1 0 691 598 2421 86 3 10 chr6 16497797 16498111 -172781443 + AluSp SINE Alu 2 313 0 4839 84 14 50 chr6 16498111 16498156 -172781398 - LTR8 LTR ERV1 -93 598 553 2127 95 0 7 chr6 16498156 16498477 -172781077 - AluY SINE Alu 0 319 1 4839 84 14 50 chr6 16498477 16498732 -172780822 - LTR8 LTR ERV1 -138 553 290 2298 71 10 7 chr6 16498732 16499028 -172780526 - AluY SINE Alu -14 297 1 4839 84 14 50 chr6 16499028 16499350 -172780204 - LTR8 LTR ERV1 -401 290 1 2052 152 0 0 chr6 16499439 16499741 -172779813 + AluSq SINE Alu 1 302 -11 200 282 43 133 chr6 16499895 16500020 -172779534 + MIR3 SINE MIR 16 120 -88 2081 131 0 16 chr6 16500020 16500333 -172779221 - AluSx SINE Alu -4 308 1 200 282 43 133 chr6 16500333 16500395 -172779159 + MIR3 SINE MIR 120 186 -22 1973 145 0 0 chr6 16500533 16500836 -172778718 - AluSx SINE Alu 0 304 2 864 69 9 0 chr6 16500948 16501064 -172778490 - AluY SINE Alu -8 303 187 1065 175 0 0 chr6 16501766 16501932 -172777622 + AluJo SINE Alu 1 166 -146 3577 114 15 9 chr6 16501932 16502260 -172777294 + MER41A LTR ERV1 1 336 -218 2354 72 0 14 chr6 16502260 16502578 -172776976 + AluY SINE Alu 1 314 0 3577 114 15 9 chr6 16502578 16502773 -172776781 + MER41A LTR ERV1 336 528 -26 918 152 0 0 chr6 16502780 16502931 -172776623 + FRAM SINE Alu 1 40 0 198 103 0 0 chr6 16503839 16503868 -172775686 + (TA)n Simple_repeat Simple_repeat 1 29 0 2069 87 4 4 chr6 16503868 16504132 -172775422 - AluSp SINE Alu -49 264 1 2201 113 13 0 chr6 16504363 16504664 -172774890 - AluSx SINE Alu -4 308 4 387 270 228 21 chr6 16504757 16505135 -172774419 - L2 LINE L2 -13 3300 2845 2197 101 29 26 chr6 16505135 16505308 -172774246 + MER41A LTR ERV1 1 172 -463 2302 92 20 0 chr6 16505308 16505612 -172773942 + AluSq SINE Alu 1 310 -3 2197 101 29 26 chr6 16505612 16505927 -172773627 + MER41A LTR ERV1 172 528 -107 520 265 11 77 chr6 16505987 16506065 -172773489 - L2 LINE L2 -663 2651 2569 2324 100 7 0 chr6 16506065 16506374 -172773180 + AluY SINE Alu 1 311 0 520 265 11 77 chr6 16506374 16506567 -172772987 - L2 LINE L2 -745 2569 2398 291 221 197 8 chr6 16506593 16506720 -172772834 + MIR SINE MIR 112 262 0 1988 69 127 22 chr6 16506761 16507036 -172772518 - AluSx SINE Alu -8 304 1 2118 124 0 10 chr6 16507050 16507348 -172772206 + AluSx SINE Alu 1 295 -17 619 248 10 13 chr6 16507554 16507745 -172771809 + MER63 DNA MER1_type 19 1688 0 2325 95 3 0 chr6 16507861 16508156 -172771398 + AluSq SINE Alu 1 296 -17 2471 74 0 0 chr6 16508162 16508501 -172771053 - AluY SINE Alu 0 339 1 294 273 0 0 chr6 16508509 16508575 -172770979 - L2 LINE L2 -4 3268 3203 197 194 0 0 chr6 16508875 16508911 -172770643 + L2 LINE L2 3271 3306 -7 789 234 90 78 chr6 16509018 16509291 -172770263 + L1MC5 LINE L1 7391 7659 -302 2116 125 3 3 chr6 16509291 16509596 -172769958 - AluSq SINE Alu -8 305 1 789 234 90 78 chr6 16509596 16509845 -172769709 + L1MC5 LINE L1 7659 7922 -39 1455 184 11 4 chr6 16509845 16510111 -172769443 + AluJb SINE Alu 3 270 -42 789 234 90 78 chr6 16510111 16510122 -172769432 + L1MC5 LINE L1 7922 7931 -30 2331 81 3 7 chr6 16510171 16510469 -172769085 - AluSp SINE Alu -16 297 1 1331 201 26 36 chr6 16510508 16510640 -172768914 + AluJb SINE Alu 1 133 -179 2014 103 65 7 chr6 16510640 16510932 -172768622 + AluSg SINE Alu 2 310 0 1331 201 26 36 chr6 16510932 16511102 -172768452 + AluJb SINE Alu 133 300 -12 2074 105 0 54 chr6 16511102 16511416 -172768138 + AluSx SINE Alu 1 297 -15 2095 112 3 17 chr6 16511437 16511733 -172767821 + AluSx SINE Alu 6 297 -15 2410 78 3 0 chr6 16511920 16512216 -172767338 - AluY SINE Alu -14 297 1 25 51 0 0 chr6 16512702 16512741 -172766813 + AT_rich Low_complexity Low_complexity 1 39 0 2038 110 7 10 chr6 16512778 16513069 -172766485 - AluSx SINE Alu -22 290 1 2172 103 13 0 chr6 16513276 16513577 -172765977 + AluSp SINE Alu 1 305 -8 2125 126 3 7 chr6 16513809 16514111 -172765443 + AluSq SINE Alu 1 301 -12 2038 129 26 22 chr6 16514129 16514257 -172765297 + AluSx SINE Alu 1 127 -185 2371 82 3 0 chr6 16514257 16514560 -172764994 + AluY SINE Alu 1 304 -7 2038 129 26 22 chr6 16514560 16514742 -172764812 + AluSx SINE Alu 127 312 0 265 121 0 167 chr6 16514751 16514817 -172764737 - MLT1G1 LTR MaLR 0 595 541 1075 156 31 0 chr6 16515026 16515186 -172764368 - FRAM SINE Alu -13 163 1 331 269 92 13 chr6 16515186 16515240 -172764314 - MLT1H1 LTR MaLR -353 237 189 2425 87 0 13 chr6 16515240 16515551 -172764003 - AluSx SINE Alu -4 308 2 331 269 92 13 chr6 16515551 16515668 -172763886 - MLT1H1 LTR MaLR -401 189 55 2371 71 0 0 chr6 16515975 16516257 -172763297 + AluY SINE Alu 2 283 -28 429 58 0 0 chr6 16516205 16516257 -172763297 + AluYa5/8 SINE Alu 232 330 0 220 43 21 43 chr6 16516257 16516304 -172763250 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 808 171 0 0 chr6 16516401 16516518 -172763036 - FLAM_C SINE Alu -16 127 11 2549 35 0 10 chr6 16517319 16517633 -172761921 + AluY SINE Alu 1 311 0 2116 87 17 0 chr6 16517768 16518056 -172761498 - AluSp SINE Alu -20 293 1 449 97 0 0 chr6 16518288 16518360 -172761194 - AluSp/q SINE Alu -2 311 240 728 161 12 54 chr6 16518495 16518663 -172760891 - BC200 scRNA scRNA -38 162 2 1117 88 23 23 chr6 16519079 16519250 -172760304 - AluY SINE Alu -7 304 134 709 128 37 0 chr6 16519431 16519540 -172760014 + AluJb SINE Alu 5 117 -195 191 228 11 109 chr6 16519672 16519764 -172759790 - L2 LINE L2 -70 3243 3161 2143 103 13 0 chr6 16519799 16520099 -172759455 + AluSc SINE Alu 1 304 -5 1984 128 13 0 chr6 16520180 16520478 -172759076 + AluSx SINE Alu 1 302 -10 538 241 69 52 chr6 16520577 16520751 -172758803 - MER5A DNA MER1_type -6 183 7 2047 128 3 3 chr6 16520849 16521161 -172758393 - AluSx SINE Alu 0 312 1 388 164 60 0 chr6 16521305 16521372 -172758182 + AluJ/FLAM SINE Alu 1 71 -231 2192 97 10 0 chr6 16521372 16521670 -172757884 - AluSx SINE Alu -11 301 1 1888 124 28 0 chr6 16521670 16521960 -172757594 - AluSx SINE Alu -14 298 1 256 167 0 74 chr6 16522817 16522871 -172756683 + Alu SINE Alu 1 50 -252 258 311 142 0 chr6 16522980 16523057 -172756497 - L2 LINE L2 0 3313 3216 1880 139 23 0 chr6 16523057 16523360 -172756194 + AluSx SINE Alu 1 310 -2 258 311 142 0 chr6 16523360 16523388 -172756166 - L2 LINE L2 -97 3216 3193 416 265 41 0 chr6 16523405 16523503 -172756051 + MER81 DNA DNA 1 102 -12 1011 162 0 17 chr6 16523531 16523704 -172755850 + AluJo SINE Alu 1 170 -142 1082 112 0 0 chr6 16523706 16523885 -172755669 - AluSq SINE Alu 0 310 132 1772 127 4 0 chr6 16523885 16524181 -172755373 + AluSx SINE Alu 26 322 0 2335 71 0 0 chr6 16524183 16524479 -172755075 + AluY SINE Alu 1 296 -15 947 165 12 0 chr6 16524479 16524643 -172754911 + AluJb SINE Alu 134 299 -13 476 236 132 0 chr6 16524644 16524750 -172754804 - FLAM_A SINE Alu -13 120 1 236 138 0 62 chr6 16524861 16524926 -172754628 + (TTTA)n Simple_repeat Simple_repeat 3 63 0 1937 130 3 0 chr6 16524931 16525215 -172754339 - AluSx SINE Alu -27 285 1 2271 72 0 37 chr6 16525273 16525594 -172753960 + AluY SINE Alu 1 309 -2 1685 158 15 0 chr6 16525599 16525871 -172753683 - AluJo SINE Alu -36 276 1 1909 171 8 40 chr6 16525876 16526054 -172753500 - MLT1B LTR MaLR -44 346 164 2162 92 0 20 chr6 16526054 16526360 -172753194 - AluSg SINE Alu -10 300 1 1457 158 10 65 chr6 16526360 16526528 -172753026 - AluJo SINE Alu -15 297 152 1834 126 28 0 chr6 16526528 16526814 -172752740 - AluSp SINE Alu -19 294 1 1457 158 10 65 chr6 16526814 16526955 -172752599 - AluJo SINE Alu -160 152 5 1909 171 8 40 chr6 16526955 16527127 -172752427 - MLT1B LTR MaLR -224 166 6 727 191 8 0 chr6 16527217 16527343 -172752211 + AluJo/FLAM SINE Alu 1 127 -185 1997 125 0 0 chr6 16527344 16527639 -172751915 - AluY SINE Alu -16 295 1 467 233 112 0 chr6 16527645 16527761 -172751793 - FLAM_A SINE Alu -4 129 1 1313 177 0 110 chr6 16527998 16528157 -172751397 - AluJb SINE Alu -20 292 117 2052 110 0 7 chr6 16528157 16528448 -172751106 - AluSg1 SINE Alu -18 291 3 1313 177 0 110 chr6 16528448 16528520 -172751034 - AluJb SINE Alu -195 117 105 2304 90 3 0 chr6 16528520 16528831 -172750723 - AluSp SINE Alu 0 313 2 1313 177 0 110 chr6 16528831 16528926 -172750628 - AluJb SINE Alu -207 105 1 220 242 113 16 chr6 16528927 16528989 -172750565 - L2 LINE L2 0 3272 3205 879 166 33 22 chr6 16529342 16529523 -172750031 - AluJo SINE Alu -10 302 120 1676 149 46 33 chr6 16529543 16529708 -172749846 - AluSx SINE Alu -6 306 134 2012 103 13 16 chr6 16529708 16530020 -172749534 - AluY SINE Alu 0 311 1 1676 149 46 33 chr6 16530020 16530156 -172749398 - AluSx SINE Alu -178 134 1 2979 155 49 49 chr6 16530179 16530696 -172748858 - MER21A LTR ERV1 0 931 412 1495 161 3 51 chr6 16530696 16530876 -172748678 - AluJo SINE Alu -5 307 147 1837 137 3 20 chr6 16530876 16531176 -172748378 - AluSx SINE Alu -15 297 3 1495 161 3 51 chr6 16531176 16531306 -172748248 - AluJo SINE Alu -165 147 12 2979 155 49 49 chr6 16531306 16531344 -172748210 - MER21A LTR ERV1 -518 413 376 227 185 261 31 chr6 16531349 16531414 -172748140 - MER21A LTR ERV1 -667 264 185 859 206 0 0 chr6 16531425 16531595 -172747959 + FRAM SINE Alu 2 171 -5 687 122 7 109 chr6 16531597 16531641 -172747913 - MER21A LTR ERV1 -748 183 136 2093 84 7 32 chr6 16531641 16531950 -172747604 + AluSp SINE Alu 1 301 -12 687 122 7 109 chr6 16531950 16532052 -172747502 - MER21A LTR ERV1 -795 136 52 1236 153 0 31 chr6 16532053 16532281 -172747273 + AluJb SINE Alu 1 221 -91 359 269 32 0 chr6 16532319 16532412 -172747142 - MIR3 SINE MIR -2 206 111 2217 98 3 3 chr6 16532626 16532932 -172746622 - AluSp SINE Alu -7 306 1 2174 103 0 0 chr6 16532939 16533230 -172746324 - AluSg SINE Alu -19 291 1 21 0 0 0 chr6 16533230 16533251 -172746303 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr6 16533773 16533796 -172745758 + (TA)n Simple_repeat Simple_repeat 1 23 0 195 42 0 0 chr6 16533796 16533820 -172745734 + (T)n Simple_repeat Simple_repeat 1 24 0 1949 118 14 0 chr6 16533898 16534194 -172745360 - AluSx SINE Alu -12 300 1 348 263 164 29 chr6 16534272 16534443 -172745111 + MLT1K LTR MaLR 395 588 0 2083 96 7 13 chr6 16535350 16535653 -172743901 - AluSg SINE Alu -9 301 1 2283 87 3 0 chr6 16535659 16535959 -172743595 - AluSp SINE Alu -12 301 1 481 286 44 28 chr6 16536206 16536388 -172743166 + MIR SINE MIR 34 218 -44 811 150 7 29 chr6 16536632 16536772 -172742782 - AluJo SINE Alu -175 137 1 248 318 12 12 chr6 16536773 16536858 -172742696 - MIR SINE MIR -57 151 67 1689 143 13 54 chr6 16536985 16537299 -172742255 - AluJb SINE Alu -11 301 1 180 0 0 0 chr6 16537893 16537913 -172741641 + (T)n Simple_repeat Simple_repeat 1 20 0 260 270 125 34 chr6 16538849 16538972 -172740582 - MIR SINE MIR -68 140 19 212 239 0 33 chr6 16540011 16540103 -172739451 + G-rich Low_complexity Low_complexity 1 89 0 213 39 0 0 chr6 16540860 16540886 -172738668 + (CCG)n Simple_repeat Simple_repeat 3 28 0 233 232 16 65 chr6 16543060 16543245 -172736309 + (CGGG)n Simple_repeat Simple_repeat 3 178 0 21 0 0 0 chr6 16543444 16543465 -172736089 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 16543561 16543584 -172735970 + GC_rich Low_complexity Low_complexity 1 23 0 200 241 36 12 chr6 16543744 16543827 -172735727 + G-rich Low_complexity Low_complexity 3 87 0 1858 128 30 16 chr6 16545925 16546230 -172733324 - AluSx SINE Alu -3 309 1 1741 79 0 4 chr6 16546615 16546842 -172732712 + AluSg SINE Alu 5 230 -80 721 132 8 25 chr6 16546847 16546968 -172732586 + AluSg/x SINE Alu 170 288 -21 1997 108 0 14 chr6 16547982 16548277 -172731277 - AluSg SINE Alu -19 291 1 1570 99 22 13 chr6 16549672 16549904 -172729650 + AluSq SINE Alu 1 234 -79 180 97 0 0 chr6 16549919 16549950 -172729604 + (A)n Simple_repeat Simple_repeat 1 31 0 482 82 14 0 chr6 16550050 16550123 -172729431 - AluSc SINE Alu -6 303 230 1498 82 0 0 chr6 16550123 16550317 -172729237 - AluSc SINE Alu -115 194 1 278 273 112 62 chr6 16550884 16551045 -172728509 + MIR SINE MIR 76 244 -18 223 287 47 62 chr6 16551915 16552044 -172727510 - MIR SINE MIR -66 142 16 418 298 180 39 chr6 16552265 16552648 -172726906 - L1ME4a LINE L1 -159 5962 5526 412 222 116 86 chr6 16553216 16553414 -172726140 + MIR SINE MIR 21 224 -38 2214 99 0 0 chr6 16553416 16553710 -172725844 + AluSg SINE Alu 1 294 -16 2062 98 0 25 chr6 16556217 16556534 -172723020 - AluSc SINE Alu 0 309 1 2109 98 10 3 chr6 16556699 16556994 -172722560 - AluSg SINE Alu -13 297 1 355 208 3 67 chr6 16557083 16557190 -172722364 - AluJb SINE Alu -161 141 56 1534 171 44 32 chr6 16557190 16557448 -172722106 - L1MB7 LINE L1 -197 5987 5723 2078 78 34 20 chr6 16557448 16557743 -172721811 - AluSg SINE Alu -11 299 1 1534 171 44 32 chr6 16557743 16557828 -172721726 - L1MB7 LINE L1 -461 5723 5640 444 19 0 0 chr6 16557980 16558033 -172721521 + (TG)n Simple_repeat Simple_repeat 1 53 0 2360 76 0 0 chr6 16558506 16558807 -172720747 - AluSx SINE Alu -11 301 1 904 175 0 6 chr6 16558812 16558978 -172720576 - AluJb SINE Alu -17 295 131 282 29 0 0 chr6 16559521 16559556 -172719998 + (TG)n Simple_repeat Simple_repeat 1 35 0 237 33 0 0 chr6 16559555 16559585 -172719969 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 1214 128 29 166 chr6 16564277 16564621 -172714933 - AluJo SINE Alu -5 297 1 210 160 0 0 chr6 16565013 16565063 -172714491 + (TCCG)n Simple_repeat Simple_repeat 3 52 0 1981 111 4 0 chr6 16565066 16565346 -172714208 - AluSp SINE Alu -32 281 1 1747 152 30 3 chr6 16565581 16565883 -172713671 + AluSx SINE Alu 1 310 -2 212 224 282 12 chr6 16566177 16566262 -172713292 + MER5A DNA MER1_type 43 150 -39 * 318 226 16 0 chr6 16566203 16566265 -172713289 - MER5A DNA MER1_type -80 109 47 1414 157 3 124 chr6 16566442 16566632 -172712922 + AluJo SINE Alu 1 134 -168 1979 113 0 0 chr6 16566632 16566907 -172712647 + AluSx SINE Alu 1 275 -37 1414 157 3 124 chr6 16566907 16567054 -172712500 + AluJo SINE Alu 134 297 -5 253 296 141 56 chr6 16567379 16567521 -172712033 - MIR SINE MIR -1 261 108 343 74 0 56 chr6 16567668 16567722 -172711832 + MIR SINE MIR 110 160 -102 2209 105 3 0 chr6 16568334 16568642 -172710912 + AluSp SINE Alu 1 309 0 2244 100 0 3 chr6 16568845 16569144 -172710410 - AluSx SINE Alu -14 298 1 24 0 0 0 chr6 16570436 16570460 -172709094 + GC_rich Low_complexity Low_complexity 1 24 0 903 132 0 16 chr6 16572211 16572340 -172707214 - FLAM_C SINE Alu -16 127 1 1824 106 92 46 chr6 16572880 16573164 -172706390 + AluSx SINE Alu 1 297 -15 2512 75 0 0 chr6 16573219 16573525 -172706029 + AluY SINE Alu 1 306 -5 1931 133 0 68 chr6 16573701 16574025 -172705529 + AluSx SINE Alu 1 302 -10 276 246 137 9 chr6 16574155 16574294 -172705260 - L1ME LINE L1 -521 5641 5486 195 231 0 19 chr6 16574756 16574808 -172704746 + MIR SINE MIR 211 261 -1 2217 124 0 0 chr6 16575544 16575843 -172703711 - AluSx SINE Alu -13 299 1 330 296 122 57 chr6 16576754 16576839 -172702715 - L1ME LINE L1 -471 5699 5621 369 0 0 0 chr6 16576839 16576880 -172702674 + (TG)n Simple_repeat Simple_repeat 2 42 0 1634 161 44 18 chr6 16576880 16577154 -172702400 - AluSx SINE Alu -28 284 4 330 296 122 57 chr6 16577154 16577435 -172702119 - L1ME LINE L1 -548 5622 5290 317 149 35 11 chr6 16577445 16577532 -172702022 + CT-rich Low_complexity Low_complexity 2 90 0 2180 81 15 0 chr6 16577543 16577815 -172701739 - AluSp SINE Alu -37 276 1 2551 65 0 0 chr6 16577886 16578192 -172701362 - AluY SINE Alu -5 306 1 2274 93 0 7 chr6 16578256 16578556 -172700998 - AluY SINE Alu -13 298 1 324 264 83 67 chr6 16578565 16578620 -172700934 - L1ME LINE L1 -896 5250 5197 2391 89 0 7 chr6 16578620 16578922 -172700632 - AluY SINE Alu -11 300 1 324 264 83 67 chr6 16578922 16579059 -172700495 - L1ME LINE L1 -949 5197 5055 2071 91 87 0 chr6 16579427 16579702 -172699852 - AluSq SINE Alu -14 299 1 2352 82 0 44 chr6 16580022 16580340 -172699214 - AluSq SINE Alu -9 304 1 320 149 45 0 chr6 16580957 16581024 -172698530 - AluS SINE Alu 0 301 232 2229 114 3 0 chr6 16581168 16581465 -172698089 - AluSg SINE Alu -12 298 1 2496 54 0 7 chr6 16581494 16581790 -172697764 + AluY SINE Alu 1 294 -17 1171 86 5 65 chr6 16581871 16582084 -172697470 + AluSp SINE Alu 123 324 0 1259 249 72 19 chr6 16582141 16582555 -172696999 - Charlie4a DNA MER1_type -34 474 39 255 271 65 19 chr6 16582799 16582906 -172696648 + L2 LINE L2 3155 3266 -6 1873 179 85 25 chr6 16583023 16583425 -172696129 - MSTA LTR MaLR -2 426 1 869 96 26 0 chr6 16584331 16584446 -172695108 - FLAM_C SINE Alu -25 118 1 2018 127 38 0 chr6 16584490 16584781 -172694773 + AluSx SINE Alu 1 302 -10 492 214 232 6 chr6 16584921 16585089 -172694465 - L1ME2 LINE L1 -9 6155 5950 1330 205 128 0 chr6 16585100 16585451 -172694103 - L1ME2 LINE L1 -289 5875 5480 2165 96 0 7 chr6 16585553 16585835 -172693719 - AluY SINE Alu -31 280 1 1545 183 38 17 chr6 16585874 16586163 -172693391 + AluJo SINE Alu 1 295 -17 2340 48 21 17 chr6 16586947 16587236 -172692318 - AluY SINE Alu -21 290 1 328 301 0 0 chr6 16587363 16587466 -172692088 - L1ME LINE L1 -460 5661 5559 1432 207 7 20 chr6 16587587 16587887 -172691667 - AluSx SINE Alu -16 296 1 1080 144 0 18 chr6 16588180 16588347 -172691207 + AluY SINE Alu 132 295 -16 2152 97 3 17 chr6 16589108 16589398 -172690156 - AluSc SINE Alu -15 294 9 2594 65 0 0 chr6 16590026 16590334 -172689220 - AluY SINE Alu 0 311 4 1946 143 4 0 chr6 16590574 16590876 -172688678 - AluSg SINE Alu 0 304 2 567 194 21 35 chr6 16591456 16591600 -172687954 - L1MC4 LINE L1 -115 7927 7786 458 244 8 0 chr6 16591614 16591733 -172687821 - L1MC4 LINE L1 -1073 6969 6850 24 0 0 0 chr6 16592054 16592078 -172687476 + AT_rich Low_complexity Low_complexity 1 24 0 1980 95 51 4 chr6 16592078 16592351 -172687203 - AluSg1 SINE Alu -23 286 1 836 151 0 8 chr6 16592432 16592558 -172686996 - FLAM_C SINE Alu -18 125 1 2273 98 20 0 chr6 16593323 16593618 -172685936 + AluSx SINE Alu 4 304 -8 360 0 0 0 chr6 16595600 16595640 -172683914 + (TG)n Simple_repeat Simple_repeat 1 40 0 282 29 0 0 chr6 16595639 16595674 -172683880 + (GA)n Simple_repeat Simple_repeat 1 35 0 * 2358 88 3 0 chr6 16597050 16597344 -172682210 + AluSx SINE Alu 1 295 -17 2092 110 41 3 chr6 16597648 16597940 -172681614 - AluSx SINE Alu -9 303 1 308 256 171 23 chr6 16598168 16598297 -172681257 - MER5A DNA MER1_type -8 181 34 493 237 79 13 chr6 16598890 16599042 -172680512 + MIR SINE MIR 79 240 -22 2552 67 3 13 chr6 16601241 16601554 -172678000 - AluSq SINE Alu -3 310 1 189 58 29 72 chr6 16601788 16601857 -172677697 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 2024 128 3 10 chr6 16601876 16602172 -172677382 + AluSg SINE Alu 1 294 -16 1444 144 53 4 chr6 16602179 16602422 -172677132 - AluSq SINE Alu -45 268 14 274 201 206 49 chr6 16604385 16604569 -172674985 + L1ME4a LINE L1 5754 5966 -155 220 286 0 0 chr6 16604569 16604618 -172674936 + (TATG)n Simple_repeat Simple_repeat 1 49 0 2416 82 3 3 chr6 16606212 16606517 -172673037 + AluSp SINE Alu 1 305 -8 2209 99 0 0 chr6 16606986 16607269 -172672285 - AluSg1 SINE Alu -26 283 1 275 232 106 53 chr6 16607279 16607298 -172672256 - L1MA10 LINE L1 -2 6332 6314 775 231 169 13 chr6 16607298 16607605 -172671949 - L1ME2 LINE L1 -9 6155 5801 263 256 90 0 chr6 16609296 16609374 -172670180 + L2 LINE L2 3188 3272 0 734 131 0 0 chr6 16609836 16609943 -172669611 + U6 snRNA snRNA 1 107 0 1409 126 190 16 chr6 16611044 16611291 -172668263 - AluSx SINE Alu -22 290 1 1565 128 124 8 chr6 16611461 16611718 -172667836 - AluSg1 SINE Alu -22 287 1 590 210 105 0 chr6 16611760 16611922 -172667632 + MIR SINE MIR 15 193 -69 1023 129 0 7 chr6 16612985 16613140 -172666414 + AluSq SINE Alu 142 295 -18 1476 152 72 45 chr6 16614311 16614601 -172664953 - AluSx SINE Alu -14 298 1 279 0 0 0 chr6 16615769 16615800 -172663754 + (TG)n Simple_repeat Simple_repeat 2 32 0 2164 103 23 3 chr6 16616700 16617001 -172662553 - AluSg SINE Alu -3 307 1 239 189 0 0 chr6 16617230 16617267 -172662287 + Alu SINE Alu 137 173 -129 227 233 163 39 chr6 16617377 16617506 -172662048 + MIR SINE MIR 71 215 -47 478 186 0 0 chr6 16618440 16618526 -172661028 - MLT1B LTR MaLR -304 86 1 1493 142 142 0 chr6 16618564 16618817 -172660737 + AluSg SINE Alu 5 293 -17 2482 61 10 13 chr6 16618817 16619127 -172660427 + AluY SINE Alu 1 309 -2 330 262 148 0 chr6 16619135 16619257 -172660297 - L1M4 LINE L1 -984 5162 5023 598 184 39 0 chr6 16619286 16619389 -172660165 - U6 snRNA snRNA 0 107 1 1147 191 89 68 chr6 16619409 16619702 -172659852 - AluJo SINE Alu 0 302 4 1588 217 99 14 chr6 16620595 16621028 -172658526 + Charlie1b DNA MER1_type 1 470 -53 249 240 219 0 chr6 16621040 16621136 -172658418 - L1MC5 LINE L1 -91 7870 7754 1185 195 61 12 chr6 16621161 16621407 -172658147 - AluJo SINE Alu -54 258 1 1698 186 3 0 chr6 16621421 16621716 -172657838 - AluSx SINE Alu -15 297 2 492 163 0 0 chr6 16622160 16622240 -172657314 - AluJ/FRAM SINE Alu -12 300 221 333 118 0 0 chr6 16622445 16622496 -172657058 + (TG)n Simple_repeat Simple_repeat 1 51 0 231 225 38 75 chr6 16623219 16623299 -172656255 - MIR SINE MIR -13 249 173 233 290 30 53 chr6 16623328 16623459 -172656095 + MIR SINE MIR 95 222 -40 1765 182 19 10 chr6 16625973 16626281 -172653273 + AluJb SINE Alu 1 311 -1 494 171 19 38 chr6 16626387 16626492 -172653062 + L1MC2 LINE L1 6060 6162 -182 1754 86 189 0 chr6 16626500 16626744 -172652810 + AluSp SINE Alu 1 290 -13 369 161 195 0 chr6 16626755 16626842 -172652712 + Tigger7 DNA MER2_type 9 112 -621 1491 158 62 121 chr6 16627776 16627847 -172651707 - L1MB7 LINE L1 0 6184 6110 2410 50 33 3 chr6 16627847 16628147 -172651407 - AluY SINE Alu -1 310 2 1491 158 62 121 chr6 16628147 16628473 -172651081 - L1MB7 LINE L1 -74 6110 5815 785 158 0 8 chr6 16628473 16628606 -172650948 - L1MB4 LINE L1 -6 6174 6043 1491 158 62 121 chr6 16628606 16628662 -172650892 - L1MB7 LINE L1 -369 5815 5757 1997 141 6 10 chr6 16630003 16630316 -172649238 - AluSx SINE Alu 0 312 1 1334 186 61 11 chr6 16630732 16630996 -172648558 + AluJo SINE Alu 6 282 -30 348 83 0 0 chr6 16631002 16631050 -172648504 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 680 137 23 61 chr6 16631624 16631755 -172647799 - FLAM_C SINE Alu -8 135 10 253 132 0 0 chr6 16631930 16631968 -172647586 - LTR1 LTR ERV1 0 785 748 13319 153 41 33 chr6 16632082 16634455 -172645099 + HUERS-P2 LTR ERV1 208 2679 -409 2260 91 10 0 chr6 16634455 16634751 -172644803 - AluSp SINE Alu -14 299 1 13319 153 41 33 chr6 16634751 16634881 -172644673 + HUERS-P2 LTR ERV1 2679 2806 -282 1084 167 0 0 chr6 16634882 16635056 -172644498 - AluSg/x SINE Alu -18 292 119 199 192 0 25 chr6 16635190 16635236 -172644318 - MIR SINE MIR -63 145 105 2100 98 9 68 chr6 16637842 16638167 -172641387 + AluSq SINE Alu 1 306 -7 234 0 0 0 chr6 16639021 16639047 -172640507 + (T)n Simple_repeat Simple_repeat 1 26 0 324 182 83 58 chr6 16639393 16639514 -172640040 - L1MB8 LINE L1 -9 6169 6046 21 0 0 0 chr6 16639754 16639775 -172639779 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 16640491 16640524 -172639030 + AT_rich Low_complexity Low_complexity 1 33 0 269 246 0 16 chr6 16640796 16640857 -172638697 + MIR SINE MIR 43 102 -160 2064 124 7 0 chr6 16641656 16641946 -172637608 - AluSg SINE Alu -14 296 5 1170 163 54 128 chr6 16642643 16642956 -172636598 - AluJb SINE Alu -11 291 2 25 53 0 18 chr6 16642971 16643000 -172636554 + AT_rich Low_complexity Low_complexity 1 30 -26 2269 108 0 0 chr6 16643000 16643306 -172636248 - AluSg SINE Alu -4 306 1 25 53 0 18 chr6 16643306 16643333 -172636221 + AT_rich Low_complexity Low_complexity 30 56 0 25 0 0 0 chr6 16643382 16643407 -172636147 + AT_rich Low_complexity Low_complexity 1 25 0 831 276 112 40 chr6 16645478 16645923 -172633631 + HsTC2 DNA Tc2 105 581 -1317 258 219 173 26 chr6 16646347 16646461 -172633093 + MIR SINE MIR 20 150 -58 1912 198 52 20 chr6 16647792 16648251 -172631303 - L1MB8 LINE L1 -344 5834 5361 1520 210 93 15 chr6 16648987 16649383 -172630171 + MLT1D LTR MaLR 79 505 0 261 218 161 11 chr6 16649514 16649601 -172629953 - MIR SINE MIR -126 136 37 197 100 50 50 chr6 16649779 16649819 -172629735 - L2 LINE L2 -218 3054 3015 180 0 0 0 chr6 16650130 16650150 -172629404 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 1596 208 79 41 chr6 16650441 16650534 -172629020 - L1MB5 LINE L1 -17 6157 6069 1929 147 3 0 chr6 16650534 16650827 -172628727 - AluSx SINE Alu -18 294 1 1596 208 79 41 chr6 16650827 16651262 -172628292 - L1MB5 LINE L1 -105 6069 5577 958 253 169 27 chr6 16650849 16651374 -172628180 - L1MC4 LINE L1 -1993 6049 5450 * 2094 133 10 0 chr6 16651649 16651957 -172627597 + AluSx SINE Alu 1 311 -1 1598 166 95 0 chr6 16654620 16654903 -172624651 - AluSq SINE Alu -3 310 1 31 58 0 0 chr6 16655057 16655109 -172624445 + AT_rich Low_complexity Low_complexity 1 52 0 1939 124 14 21 chr6 16655109 16655399 -172624155 - AluSg SINE Alu -22 288 1 1351 197 3 72 chr6 16655401 16655721 -172623833 - AluJo SINE Alu -14 298 1 647 274 181 0 chr6 16656021 16656313 -172623241 + L2 LINE L2 2429 2773 -541 1736 156 44 3 chr6 16656809 16657104 -172622450 - AluSx SINE Alu -5 307 1 296 217 388 0 chr6 16658184 16658313 -172621241 + MER5A DNA MER1_type 1 179 -10 188 200 25 0 chr6 16658549 16658589 -172620965 + MIR SINE MIR 103 143 -65 788 224 87 20 chr6 16659688 16659884 -172619670 + MER3 DNA MER1_type 1 209 0 195 125 0 0 chr6 16661415 16661455 -172618099 + (G)n Simple_repeat Simple_repeat 1 40 0 213 333 30 0 chr6 16662113 16662212 -172617342 - L3 LINE CR1 -166 1411 1310 297 289 24 12 chr6 16663492 16663575 -172615979 + L3 LINE CR1 1127 1210 -367 334 261 231 0 chr6 16663783 16663917 -172615637 - MER5A DNA MER1_type 0 189 25 369 200 60 10 chr6 16665034 16665134 -172614420 - L2 LINE L2 -4 3268 3164 2278 61 16 39 chr6 16665247 16665557 -172613997 - AluY SINE Alu -8 303 1 1949 114 21 11 chr6 16667289 16667570 -172611984 - AluSg SINE Alu -26 284 1 2097 136 3 0 chr6 16667614 16667923 -172611631 - AluSg SINE Alu 0 310 1 1738 164 0 27 chr6 16671355 16671647 -172607907 + AluJo SINE Alu 6 289 -23 254 290 14 0 chr6 16671863 16671932 -172607622 + (TG)n Simple_repeat Simple_repeat 1 70 0 2227 89 123 0 chr6 16672062 16672378 -172607176 - THE1A LTR MaLR 0 355 1 951 132 0 0 chr6 16672416 16672545 -172607009 - AluSg SINE Alu -46 266 138 263 132 0 118 chr6 16672545 16672613 -172606941 + AluJo SINE Alu 94 153 -149 849 132 0 0 chr6 16672617 16672738 -172606816 - AluSg SINE Alu -179 131 11 2183 109 3 13 chr6 16672791 16673103 -172606451 - AluSc SINE Alu 0 309 1 25 0 0 0 chr6 16673106 16673131 -172606423 + AT_rich Low_complexity Low_complexity 1 25 0 228 304 0 88 chr6 16673471 16673573 -172605981 - MIR SINE MIR -95 113 21 418 238 186 26 chr6 16674589 16674782 -172604772 - MIR SINE MIR -18 244 21 2013 123 3 14 chr6 16674966 16675251 -172604303 - AluSx SINE Alu -30 282 1 193 54 0 54 chr6 16675927 16675964 -172603590 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2227 48 62 24 chr6 16675988 16676280 -172603274 + AluY SINE Alu 1 303 -8 429 179 123 49 chr6 16676712 16676874 -172602680 - MER104 DNA Tc2 0 180 7 1942 112 76 0 chr6 16676918 16677195 -172602359 + AluSg SINE Alu 1 298 -12 251 234 13 26 chr6 16677472 16677549 -172602005 - MIR3 SINE MIR -7 201 126 672 217 16 0 chr6 16678085 16678214 -172601340 - FLAM_A SINE Alu -1 132 2 382 270 123 10 chr6 16678299 16678503 -172601051 + L2 LINE L2 1584 1810 -1504 2234 104 13 0 chr6 16678712 16679010 -172600544 - AluSp SINE Alu -11 302 1 1169 186 53 0 chr6 16679012 16679238 -172600316 - AluJo SINE Alu -9 303 66 248 259 43 86 chr6 16679307 16679469 -172600085 + L2 LINE L2 2323 2477 -837 1035 181 111 48 chr6 16679508 16679778 -172599776 - AluJb SINE Alu -14 298 12 270 343 97 23 chr6 16679831 16680341 -172599213 + L2 LINE L2 2562 3149 -164 50 71 0 0 chr6 16680381 16680480 -172599074 + AT_rich Low_complexity Low_complexity 1 99 0 293 319 0 14 chr6 16681053 16681167 -172598387 - MIR SINE MIR -97 111 3 240 184 0 0 chr6 16681167 16681216 -172598338 + CT-rich Low_complexity Low_complexity 6 54 0 189 74 0 0 chr6 16681221 16681248 -172598306 + (TG)n Simple_repeat Simple_repeat 2 28 0 307 202 123 97 chr6 16681403 16681538 -172598016 - FLAM_C SINE Alu 0 138 1 691 222 247 45 chr6 16682216 16682508 -172597046 - MLT1B LTR MaLR 0 390 24 231 165 24 35 chr6 16683489 16683574 -172595980 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 849 177 39 28 chr6 16684110 16684291 -172595263 - AluJb SINE Alu -45 267 85 375 23 0 0 chr6 16686956 16687000 -172592554 + (TG)n Simple_repeat Simple_repeat 2 45 0 627 241 31 42 chr6 16687476 16687597 -172591957 + MER3 DNA MER1_type 5 125 -84 2132 122 3 10 chr6 16687597 16687901 -172591653 - AluSq SINE Alu -11 302 1 627 241 31 42 chr6 16687901 16687970 -172591584 + MER3 DNA MER1_type 125 193 -16 255 194 56 14 chr6 16688597 16688669 -172590885 + L1ME4a LINE L1 5964 6038 -83 1330 186 68 21 chr6 16689249 16689529 -172590025 + AluJb SINE Alu 4 296 -16 226 286 48 0 chr6 16690067 16690130 -172589424 - L1ME LINE L1 -537 5584 5519 1569 124 120 8 chr6 16690231 16690481 -172589073 - AluY SINE Alu -33 278 1 988 109 0 0 chr6 16690484 16690612 -172588942 - AluSp SINE Alu -181 132 5 1820 124 4 4 chr6 16690613 16690871 -172588683 - AluSc SINE Alu -43 266 9 209 147 0 0 chr6 16691255 16691289 -172588265 - MIR SINE MIR -113 149 116 21 0 0 0 chr6 16691385 16691406 -172588148 + AT_rich Low_complexity Low_complexity 1 21 0 612 184 0 9 chr6 16691417 16691531 -172588023 - Tigger7 DNA MER2_type 0 2487 2375 821 213 63 6 chr6 16691546 16691720 -172587834 - Tigger7 DNA MER2_type -2301 186 3 406 273 48 94 chr6 16692600 16692974 -172586580 + L1ME3A LINE L1 5532 5888 -282 263 303 10 10 chr6 16694233 16694332 -172585222 + MIR3 SINE MIR 76 174 -34 204 214 0 0 chr6 16694403 16694459 -172585095 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 207 237 34 0 chr6 16694579 16694638 -172584916 + MIR SINE MIR 157 217 -45 226 239 0 0 chr6 16695801 16695847 -172583707 + CT-rich Low_complexity Low_complexity 2 47 0 198 0 0 0 chr6 16696815 16696837 -172582717 + (T)n Simple_repeat Simple_repeat 1 22 0 486 0 0 0 chr6 16699436 16699490 -172580064 + (CA)n Simple_repeat Simple_repeat 1 54 0 2161 114 0 0 chr6 16701070 16701351 -172578203 + AluSc SINE Alu 1 281 -28 1353 177 32 35 chr6 16701894 16702177 -172577377 + AluJo SINE Alu 1 282 -30 212 186 0 66 chr6 16702204 16702307 -172577247 + MER5A DNA MER1_type 20 188 -1 1859 157 42 0 chr6 16702898 16703185 -172576369 + AluJo SINE Alu 1 299 -13 565 229 199 19 chr6 16703440 16703707 -172575847 - MER33 DNA MER1_type -1 323 9 281 344 39 0 chr6 16705331 16705459 -172574095 - Charlie8 DNA MER1_type -2208 209 77 1870 152 22 4 chr6 16707242 16707518 -172572036 - AluSx SINE Alu -30 282 2 2294 89 23 0 chr6 16707925 16708228 -172571326 - AluSp SINE Alu -2 311 2 694 236 46 6 chr6 16708316 16708490 -172571064 - MSTD LTR MaLR 0 396 216 748 196 5 73 chr6 16708500 16708704 -172570850 - AluJo SINE Alu 0 312 123 970 142 13 7 chr6 16708704 16708859 -172570695 - MSTD LTR MaLR -237 159 4 21 82 0 0 chr6 16709681 16709730 -172569824 + AT_rich Low_complexity Low_complexity 1 49 0 6315 79 9 61 chr6 16709731 16710736 -172568818 - SVA Other Other -1 1385 433 5919 62 22 66 chr6 16710753 16711659 -172567895 - SVA Other Other -520 866 1 350 260 29 0 chr6 16712244 16712348 -172567206 + MIR SINE MIR 91 197 -65 1577 186 7 20 chr6 16712372 16712667 -172566887 + AluJb SINE Alu 1 291 -21 2069 94 20 10 chr6 16713133 16713431 -172566123 - AluSc SINE Alu -8 301 1 303 207 117 69 chr6 16714374 16714519 -172565035 - L1MEc LINE L1 -4646 1750 1599 2177 282 167 27 chr6 16714541 16715056 -172564498 - L1MEc LINE L1 -4759 1637 1196 2232 83 11 0 chr6 16715056 16715333 -172564221 + AluSg SINE Alu 18 297 -13 2177 282 167 27 chr6 16715333 16716244 -172563310 - L1MEc LINE L1 -5200 1196 11 1725 167 10 19 chr6 16717902 16718214 -172561340 - AluJb SINE Alu -3 309 1 822 165 0 0 chr6 16719051 16719184 -172560370 - FLAM_C SINE Alu 0 133 1 2198 98 0 3 chr6 16719492 16719777 -172559777 + AluSp SINE Alu 1 284 -29 1200 94 0 0 chr6 16719628 16719777 -172559777 + AluSp SINE Alu 136 314 0 191 0 67 0 chr6 16719777 16719807 -172559747 + (CAA)n Simple_repeat Simple_repeat 2 180 0 394 252 0 66 chr6 16719814 16719965 -172559589 - MIR SINE MIR -10 252 112 1179 205 151 29 chr6 16720345 16720696 -172558858 + MSTD LTR MaLR 1 394 -2 2669 49 0 6 chr6 16723193 16723520 -172556034 - L1PA5 LINE L1 -8 6146 5822 2146 134 0 0 chr6 16723541 16723847 -172555707 + AluSx SINE Alu 2 307 -5 1572 184 7 32 chr6 16724171 16724481 -172555073 - AluJo SINE Alu -6 306 5 1307 83 47 156 chr6 16726947 16727063 -172552491 - MER51A LTR ERV1 0 634 507 1775 155 14 4 chr6 16727063 16727340 -172552214 + AluSx SINE Alu 1 280 -32 1307 83 47 156 chr6 16727340 16727362 -172552192 - MER51A LTR ERV1 -127 507 484 291 28 0 0 chr6 16727362 16727398 -172552156 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1307 83 47 156 chr6 16727398 16727534 -172552020 - MER51A LTR ERV1 -150 484 389 457 101 157 22 chr6 16727590 16727679 -172551875 - MER51A LTR ERV1 -529 105 5 967 212 0 11 chr6 16727819 16728008 -172551546 - MER5A DNA MER1_type 0 189 3 369 0 0 0 chr6 16728327 16728368 -172551186 + (TG)n Simple_repeat Simple_repeat 2 42 0 450 0 0 0 chr6 16728838 16728888 -172550666 + (TG)n Simple_repeat Simple_repeat 2 51 0 27 0 0 0 chr6 16729056 16729083 -172550471 + AT_rich Low_complexity Low_complexity 1 27 0 258 364 130 5 chr6 16730122 16730306 -172549248 - L1MEd LINE L1 -5456 663 457 28 0 0 0 chr6 16730626 16730654 -172548900 + AT_rich Low_complexity Low_complexity 1 28 0 3732 134 96 23 chr6 16730842 16731574 -172547980 - LTR1 LTR ERV1 0 785 1 313 218 20 59 chr6 16732480 16732581 -172546973 - MER34 LTR ERV1 -14 528 432 881 74 0 0 chr6 16732629 16732737 -172546817 + AluSc SINE Alu 190 297 -12 2129 123 0 10 chr6 16733663 16733965 -172545589 + AluSx SINE Alu 1 299 -13 1756 83 46 12 chr6 16736682 16736955 -172542599 - AluSq SINE Alu 0 313 44 198 0 0 0 chr6 16739652 16739674 -172539880 + (T)n Simple_repeat Simple_repeat 1 22 0 404 221 147 32 chr6 16743746 16743936 -172535618 + MER5C DNA MER1_type 77 288 -36 1475 158 15 85 chr6 16744280 16744610 -172534944 + AluJo SINE Alu 1 307 -5 2367 98 0 0 chr6 16745079 16745385 -172534169 - AluSq SINE Alu -6 307 2 1788 103 0 66 chr6 16745782 16746053 -172533501 + AluSx SINE Alu 1 253 -59 219 36 0 0 chr6 16746056 16746084 -172533470 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 21 57 0 0 chr6 16747904 16747939 -172531615 + AT_rich Low_complexity Low_complexity 1 35 0 1199 252 121 34 chr6 16747974 16748538 -172531016 - L1MC4 LINE L1 -184 7858 7246 * 1455 226 55 30 chr6 16748522 16749056 -172530498 - L1MC4 LINE L1 -800 7080 6455 1445 158 6 76 chr6 16749379 16749695 -172529859 - AluJo SINE Alu -13 299 6 633 233 25 0 chr6 16749965 16750128 -172529426 + FRAM SINE Alu 1 165 -11 1331 118 126 0 chr6 16750179 16750417 -172529137 - L1MA5A LINE L1 0 6297 6030 2345 78 14 0 chr6 16750460 16750743 -172528811 - AluSx SINE Alu -24 288 2 342 236 186 67 chr6 16751807 16752167 -172527387 - L1ME4a LINE L1 0 6121 5719 222 267 35 12 chr6 16753978 16754064 -172525490 + MIR SINE MIR 90 177 -85 1675 188 24 18 chr6 16754122 16754463 -172525091 + MER2 DNA MER2_type 2 344 0 2155 103 0 14 chr6 16755597 16755921 -172523633 - AluSx SINE Alu 0 320 1 236 304 0 0 chr6 16757104 16757183 -172522371 - MER113 DNA MER1_type? -442 79 1 2076 148 0 3 chr6 16758337 16758648 -172520906 - AluSq SINE Alu -3 310 1 1735 170 11 0 chr6 16760088 16760370 -172519184 + AluJo SINE Alu 1 285 -27 2366 85 0 7 chr6 16760692 16761020 -172518534 - AluSx SINE Alu 0 312 1 1461 150 118 0 chr6 16762480 16762734 -172516820 + AluJo SINE Alu 5 288 -24 21 0 0 0 chr6 16763151 16763172 -172516382 + AT_rich Low_complexity Low_complexity 1 21 0 730 145 13 0 chr6 16764177 16764329 -172515225 + CT-rich Low_complexity Low_complexity 1 154 0 1126 84 0 89 chr6 16764340 16764530 -172515024 - AluY SINE Alu -3 308 136 2393 71 0 3 chr6 16764813 16765108 -172514446 + AluSc SINE Alu 1 294 -15 61 15 0 0 chr6 16766894 16766962 -172512592 + AT_rich Low_complexity Low_complexity 1 68 0 278 239 0 57 chr6 16769395 16769483 -172510071 + MIR SINE MIR 69 151 -111 189 0 0 0 chr6 16772421 16772442 -172507112 + (T)n Simple_repeat Simple_repeat 1 21 0 250 221 63 87 chr6 16773133 16773260 -172506294 + MIR SINE MIR 59 182 -80 230 139 0 0 chr6 16773303 16773339 -172506215 + MER2 DNA MER2_type 310 345 0 2179 105 20 3 chr6 16773587 16773881 -172505673 - AluSq SINE Alu -14 299 1 3382 221 101 50 chr6 16777188 16778421 -172501133 - Charlie1a DNA MER1_type -4 1451 155 1674 193 54 26 chr6 16778486 16778911 -172500643 - L1MB7 LINE L1 -340 5844 5408 606 234 32 6 chr6 16778911 16779069 -172500485 - Charlie1a DNA MER1_type -1293 162 1 228 213 293 0 chr6 16779526 16779601 -172499953 - MIR SINE MIR -107 155 59 639 197 204 29 chr6 16780308 16780582 -172498972 + L1MA7 LINE L1 5991 6312 0 306 324 0 19 chr6 16781443 16781548 -172498006 + MIR SINE MIR 158 260 -2 244 27 0 0 chr6 16781723 16781760 -172497794 - Alu SINE Alu -2 300 264 1808 133 64 25 chr6 16781801 16782162 -172497392 - THE1C LTR MaLR 0 375 1 206 182 18 36 chr6 16784758 16784813 -172494741 + CT-rich Low_complexity Low_complexity 3 56 0 255 321 107 0 chr6 16788153 16788293 -172491261 + MER5B DNA MER1_type 24 178 0 676 199 45 0 chr6 16789143 16789299 -172490255 + MER5A DNA MER1_type 1 163 -26 267 299 44 29 chr6 16789177 16789314 -172490240 - MER5A DNA MER1_type -27 162 24 * 2226 73 29 4 chr6 16789330 16789605 -172489949 - AluY SINE Alu -10 301 20 2380 46 42 7 chr6 16792297 16792582 -172486972 + AluY SINE Alu 2 296 -15 1668 161 29 29 chr6 16792731 16793041 -172486513 - MLT1B LTR MaLR -79 311 2 206 133 0 44 chr6 16795275 16795320 -172484234 + (TGAG)n Simple_repeat Simple_repeat 4 46 0 316 245 71 0 chr6 16795663 16795761 -172483793 + L2 LINE L2 3203 3307 -6 544 229 112 0 chr6 16796472 16796642 -172482912 - MSTD LTR MaLR 0 396 208 408 294 73 11 chr6 16798459 16798636 -172480918 + L2 LINE L2 3121 3308 -5 886 219 93 12 chr6 16801633 16801880 -172477674 - L1MB3 LINE L1 -284 5899 5633 228 75 0 50 chr6 16803590 16803630 -172475924 - L1MB7 LINE L1 -777 5403 5366 267 31 0 0 chr6 16803682 16803714 -172475840 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 703 179 62 34 chr6 16809599 16809778 -172469776 - MLT1B LTR MaLR -205 185 2 1105 184 161 19 chr6 16809961 16810228 -172469326 - AluJb SINE Alu -7 305 1 1258 159 174 15 chr6 16810428 16810692 -172468862 + AluJo SINE Alu 1 306 -6 1252 102 255 4 chr6 16810692 16810927 -172468627 + AluSg SINE Alu 3 296 -4 2196 99 10 7 chr6 16813404 16813698 -172465856 - AluSx SINE Alu -17 295 1 25 31 0 0 chr6 16815189 16815221 -172464333 + AT_rich Low_complexity Low_complexity 1 32 0 192 77 0 0 chr6 16815597 16815623 -172463931 + (CA)n Simple_repeat Simple_repeat 2 27 0 228 67 0 0 chr6 16815988 16816018 -172463536 + (A)n Simple_repeat Simple_repeat 1 30 0 292 174 29 58 chr6 16817148 16817217 -172462337 - 5S rRNA rRNA -54 67 1 380 217 183 17 chr6 16820235 16820350 -172459204 + L1ME3A LINE L1 518 651 -5468 567 318 123 37 chr6 16820482 16821081 -172458473 + L1ME3A LINE L1 739 1562 -928 394 239 102 68 chr6 16821816 16822109 -172457445 + L1ME3A LINE L1 2115 2417 -3712 324 267 143 24 chr6 16822264 16822474 -172457080 + L1ME3A LINE L1 2771 3005 -3124 1127 170 14 19 chr6 16823173 16823385 -172456169 - MER20 DNA MER1_type -5 214 4 602 294 68 59 chr6 16823496 16823708 -172455846 + L1ME3A LINE L1 5423 5632 -521 559 181 219 7 chr6 16823708 16823863 -172455691 + MER5A DNA MER1_type 2 189 0 602 294 68 59 chr6 16823863 16823919 -172455635 + L1ME3A LINE L1 5632 5686 -467 1898 143 10 3 chr6 16823919 16824212 -172455342 + AluJo SINE Alu 1 295 -17 602 294 68 59 chr6 16824212 16824367 -172455187 + L1ME3A LINE L1 5686 5851 -302 1484 203 34 23 chr6 16825818 16826168 -172453386 + MLT1A2 LTR MaLR 4 357 -17 2439 91 0 0 chr6 16826541 16826848 -172452706 - AluSc SINE Alu -2 307 1 304 314 142 15 chr6 16827277 16827614 -172451940 + L1ME4a LINE L1 5732 6111 -10 2315 93 10 0 chr6 16827614 16827915 -172451639 - AluSx SINE Alu -8 304 1 217 183 83 0 chr6 16828513 16828573 -172450981 + L2 LINE L2 2909 2973 -299 222 269 0 0 chr6 16828799 16828851 -172450703 + L2 LINE L2 3212 3263 -9 1582 147 54 109 chr6 16828852 16829275 -172450279 + L1MB3 LINE L1 5781 6180 -3 2392 77 0 26 chr6 16829286 16829596 -172449958 + AluSx SINE Alu 1 302 -10 1675 139 113 29 chr6 16829933 16830237 -172449317 + THE1C LTR MaLR 1 339 -36 2025 128 3 24 chr6 16830237 16830533 -172449021 - AluSx SINE Alu -22 290 1 1675 139 113 29 chr6 16830533 16830574 -172448980 + THE1C LTR MaLR 339 375 0 9418 119 39 48 chr6 16830574 16832055 -172447499 + THE1C-int LTR MaLR 1 1467 -113 2038 112 7 40 chr6 16832055 16832359 -172447195 + AluSg SINE Alu 1 294 -16 9418 119 39 48 chr6 16832359 16832472 -172447082 + THE1C-int LTR MaLR 1467 1580 0 1656 156 95 12 chr6 16832472 16832818 -172446736 + THE1C LTR MaLR 1 375 0 1584 246 36 24 chr6 16833058 16833525 -172446029 + MLT1E3 LTR MaLR 139 611 -13 321 291 132 24 chr6 16834514 16834765 -172444789 + LTR16C LTR ERVL 187 464 -27 233 293 47 28 chr6 16834812 16834918 -172444636 + MIR SINE MIR 126 233 -29 2331 88 0 3 chr6 16835563 16835858 -172443696 - AluY SINE Alu -17 294 1 2248 120 0 0 chr6 16837277 16837586 -172441968 - AluSc SINE Alu 0 309 1 2096 129 0 26 chr6 16837614 16837916 -172441638 - AluSx SINE Alu -18 294 1 639 230 171 15 chr6 16838137 16838396 -172441158 - L1MD3 LINE L1 0 7995 6068 273 91 45 0 chr6 16838428 16838472 -172441082 + LTR10B LTR ERV1 6 51 -496 2642 129 137 6 chr6 16838495 16838977 -172440577 + LTR10A LTR ERV1 1 545 -64 2440 194 34 2 chr6 16839019 16839492 -172440062 - L1MD3 LINE L1 -382 5977 5490 1086 169 0 11 chr6 16839526 16839715 -172439839 + MER46A DNA MER2_type 41 227 -9 2487 76 0 3 chr6 16840977 16841281 -172438273 - AluSg SINE Alu -7 303 1 231 114 0 0 chr6 16841825 16841860 -172437694 + (T)n Simple_repeat Simple_repeat 1 35 0 580 225 100 19 chr6 16842176 16842336 -172437218 - MER5A DNA MER1_type 0 189 17 453 19 0 0 chr6 16843345 16843399 -172436155 + (CA)n Simple_repeat Simple_repeat 2 55 0 21 71 0 0 chr6 16843828 16843870 -172435684 + AT_rich Low_complexity Low_complexity 1 42 0 2402 83 0 19 chr6 16844121 16844434 -172435120 + AluSg SINE Alu 1 307 -3 747 171 0 0 chr6 16847422 16847539 -172432015 + FLAM_C SINE Alu 1 117 -26 915 92 0 0 chr6 16848099 16848219 -172431335 - MER72 LTR ERV1 -44 678 559 1348 199 49 107 chr6 16848682 16849160 -172430394 + MER39 LTR ERV1 1 599 -94 652 190 7 51 chr6 16849160 16849297 -172430257 - FLAM_C SINE Alu 0 133 3 1348 199 49 107 chr6 16849297 16849382 -172430172 + MER39 LTR ERV1 599 687 -6 4591 132 20 6 chr6 16849382 16850086 -172429468 - MER72 LTR ERV1 0 722 9 3906 122 38 22 chr6 16850216 16850841 -172428713 + MER41B LTR ERV1 1 635 0 3210 149 127 69 chr6 16850841 16851100 -172428454 + MER41B-int LTR ERV1 1 244 -5702 2375 88 7 0 chr6 16851100 16851396 -172428158 - AluSq SINE Alu -15 298 1 3210 149 127 69 chr6 16851396 16851829 -172427725 + MER41B-int LTR ERV1 244 733 -5213 * 9480 125 48 22 chr6 16851825 16853190 -172426364 + MER41B-int LTR ERV1 3025 4441 -1505 2314 92 17 0 chr6 16853190 16853483 -172426071 - AluSx SINE Alu -14 298 1 9480 125 48 22 chr6 16853483 16853733 -172425821 + MER41B-int LTR ERV1 4441 4683 -1263 9045 121 11 6 chr6 16853733 16854942 -172424612 + HSMAR1 DNA Mariner 1 1219 -68 2289 89 10 0 chr6 16854942 16855233 -172424321 + AluY SINE Alu 1 294 -17 9045 121 11 6 chr6 16855233 16855298 -172424256 + HSMAR1 DNA Mariner 1219 1282 -5 8364 117 13 23 chr6 16855298 16856569 -172422985 + MER41B-int LTR ERV1 4688 5946 0 4033 134 16 19 chr6 16856570 16857206 -172422348 + MER41B LTR ERV1 2 635 0 462 241 54 42 chr6 16857731 16857897 -172421657 + L2 LINE L2 2578 2745 -569 294 269 152 6 chr6 16857965 16858136 -172421418 + L2 LINE L2 2864 3059 -213 3847 182 31 49 chr6 16858173 16858307 -172421247 + L1MB7 LINE L1 5030 5165 -1019 3621 119 6 20 chr6 16858307 16858692 -172420862 + LTR26B LTR ERV1 1 377 -154 2031 109 32 51 chr6 16858692 16859003 -172420551 + AluSx SINE Alu 1 305 -7 3621 119 6 20 chr6 16859003 16859156 -172420398 + LTR26B LTR ERV1 377 531 0 3847 182 31 49 chr6 16859156 16859313 -172420241 + L1MB7 LINE L1 5165 5323 -861 2144 141 0 3 chr6 16859313 16859625 -172419929 - AluSx SINE Alu -1 311 1 3847 182 31 49 chr6 16859625 16859749 -172419805 + L1MB7 LINE L1 5323 5448 -736 1535 186 41 0 chr6 16859749 16860039 -172419515 + AluJo SINE Alu 1 302 -10 3847 182 31 49 chr6 16860039 16860774 -172418780 + L1MB7 LINE L1 5448 6174 -10 369 244 158 30 chr6 16860917 16860943 -172418611 + MIR SINE MIR 20 41 -221 4100 151 57 69 chr6 16860943 16860965 -172418589 + MER4D LTR ERV1 1 22 -881 2710 3 0 3 chr6 16860965 16861253 -172418301 + AluYa5 SINE Alu 17 303 -8 4100 151 57 69 chr6 16861253 16861618 -172417936 + MER4D LTR ERV1 22 390 -513 1866 142 42 0 chr6 16861618 16861907 -172417647 - AluSx SINE Alu -11 301 1 4100 151 57 69 chr6 16861907 16862089 -172417465 + MER4D LTR ERV1 390 573 -330 1757 179 7 0 chr6 16862089 16862369 -172417185 + AluJo SINE Alu 1 282 -30 360 0 0 0 chr6 16862374 16862414 -172417140 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4100 151 57 69 chr6 16862414 16862750 -172416804 + MER4D LTR ERV1 577 903 0 369 244 158 30 chr6 16862750 16862887 -172416667 + MIR SINE MIR 41 204 -58 1344 232 49 51 chr6 16862907 16863418 -172416136 + MER39 LTR ERV1 1 690 -17 447 116 0 43 chr6 16863420 16863489 -172416065 + Tigger2 DNA MER2_type 4 69 -2649 * 2440 133 76 19 chr6 16863479 16863901 -172415653 + Tigger2 DNA MER2_type 2273 2718 0 3761 119 22 22 chr6 16863937 16864559 -172414995 + LTR26E LTR ERV1 1 622 0 314 326 28 28 chr6 16864563 16864781 -172414773 + L2 LINE L2 2842 3059 -213 228 288 0 27 chr6 16864916 16864989 -172414565 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 1848 133 208 0 chr6 16865273 16865610 -172413944 + MER101 LTR ERV1 68 474 0 850 246 32 25 chr6 16865900 16866181 -172413373 + L1MC5 LINE L1 7634 7916 -45 386 272 174 0 chr6 16867037 16867221 -172412333 - MIR SINE MIR -10 252 37 467 250 41 35 chr6 16867434 16867606 -172411948 - MIR SINE MIR 0 262 90 1712 195 0 0 chr6 16867646 16867943 -172411611 - AluJb SINE Alu -10 302 6 601 192 54 8 chr6 16868453 16868583 -172410971 + FLAM_C SINE Alu 5 140 -3 2228 110 0 7 chr6 16868610 16868919 -172410635 - AluSg1 SINE Alu 0 309 3 2434 78 0 13 chr6 16871033 16871339 -172408215 - AluSx SINE Alu -10 302 1 285 160 0 0 chr6 16871350 16871400 -172408154 - MER113 DNA MER1_type? -321 200 151 1767 179 27 3 chr6 16871410 16871707 -172407847 + AluSx SINE Alu 1 304 -8 186 275 101 0 chr6 16871816 16871885 -172407669 - L2 LINE L2 -17 3296 3221 785 308 312 18 chr6 16872100 16873469 -172406085 - L2 LINE L2 -438 2876 1071 4982 124 50 16 chr6 16873692 16874440 -172405114 + L1MA5 LINE L1 5368 6154 -146 2301 99 3 10 chr6 16874440 16874744 -172404810 + AluSx SINE Alu 1 302 -10 4982 124 50 16 chr6 16874744 16874895 -172404659 + L1MA5 LINE L1 6154 6298 -2 248 337 77 12 chr6 16875149 16875318 -172404236 + L1ME4a LINE L1 5426 5605 -516 300 258 92 8 chr6 16875440 16875560 -172403994 + L1ME4a LINE L1 5831 5960 -161 190 262 0 0 chr6 16875692 16875734 -172403820 + L3 LINE CR1 893 934 -643 296 360 29 14 chr6 16875774 16875913 -172403641 + L3 LINE CR1 1058 1198 -379 2217 106 0 0 chr6 16876092 16876394 -172403160 - AluSg SINE Alu -8 302 1 2226 107 10 3 chr6 16876395 16876693 -172402861 - AluSx SINE Alu -10 302 3 396 263 105 12 chr6 16877173 16877291 -172402263 + MIR SINE MIR 9 135 -73 1968 135 0 10 chr6 16877899 16878195 -172401359 - AluJo SINE Alu -15 297 5 222 37 0 0 chr6 16879618 16879645 -172399909 + (T)n Simple_repeat Simple_repeat 1 27 0 183 100 0 0 chr6 16879870 16879900 -172399654 + (TA)n Simple_repeat Simple_repeat 1 30 0 432 0 0 0 chr6 16879981 16880029 -172399525 + (TA)n Simple_repeat Simple_repeat 2 49 0 235 307 131 88 chr6 16881314 16882072 -172397482 + L2 LINE L2 1560 2349 -965 1604 190 63 123 chr6 16882085 16882754 -172396800 + L1MB8 LINE L1 4396 5024 -1122 * 1765 186 0 3 chr6 16882751 16883096 -172396458 + L1MB8 LINE L1 5490 5833 -345 206 400 30 15 chr6 16883152 16883287 -172396267 + L2 LINE L2 2607 2743 -571 194 350 33 42 chr6 16883508 16883628 -172395926 + L2 LINE L2 2763 2881 -433 2069 124 0 17 chr6 16884852 16885150 -172394404 - AluSx SINE Alu -19 293 1 264 341 82 14 chr6 16885192 16885400 -172394154 + L2 LINE L2 1876 2097 -1217 1984 93 33 43 chr6 16886027 16886328 -172393226 - AluSx SINE Alu -14 298 1 338 298 53 30 chr6 16887464 16887595 -172391959 - MIR3 SINE MIR -33 175 42 2328 98 0 13 chr6 16889097 16889413 -172390141 + AluSx SINE Alu 1 312 0 2465 89 0 6 chr6 16890169 16890483 -172389071 - AluSx SINE Alu 0 312 1 239 341 57 63 chr6 16890839 16891156 -172388398 - L2 LINE L2 -575 2739 2425 1457 279 203 0 chr6 16891277 16891936 -172387618 + L2 LINE L2 1808 2600 -714 275 295 122 58 chr6 16891967 16892245 -172387309 - L2 LINE L2 -2 3311 3016 506 286 125 0 chr6 16894153 16894345 -172385209 - MIR SINE MIR -11 251 36 39 50 0 0 chr6 16894706 16894766 -172384788 + AT_rich Low_complexity Low_complexity 1 60 0 480 296 111 5 chr6 16895170 16895369 -172384185 + MIR SINE MIR 29 248 -14 421 345 141 21 chr6 16895447 16896070 -172383484 - L2 LINE L2 -613 2701 2004 1957 107 4 7 chr6 16896521 16896792 -172382762 + AluSp SINE Alu 44 313 0 437 206 0 0 chr6 16896903 16896976 -172382578 + FRAM/FAM SINE Alu 1 69 -107 216 0 0 0 chr6 16896997 16897021 -172382533 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr6 16898186 16898214 -172381340 + AT_rich Low_complexity Low_complexity 1 28 0 392 246 52 37 chr6 16898322 16898456 -172381098 - L1MEc LINE L1 -5403 993 858 2169 251 94 7 chr6 16898465 16899190 -172380364 - L1MEc LINE L1 -5574 822 35 477 302 83 54 chr6 16900256 16900534 -172379020 + L2 LINE L2 2919 3204 -109 388 258 52 39 chr6 16901884 16901927 -172377627 + MER103 DNA DNA 3 44 -122 1971 132 42 0 chr6 16901927 16902215 -172377339 - AluSx SINE Alu -12 300 1 2305 108 0 0 chr6 16902221 16902517 -172377037 - AluSx SINE Alu -15 297 2 388 258 52 39 chr6 16902517 16902621 -172376933 + MER103 DNA DNA 48 159 -7 2335 260 126 75 chr6 16902785 16903257 -172376297 - HAL1 LINE L1 -64 2443 1997 225 0 0 0 chr6 16903257 16903282 -172376272 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2335 260 126 75 chr6 16903282 16904235 -172375319 - HAL1 LINE L1 -510 1997 875 2154 107 7 3 chr6 16904235 16904535 -172375019 - AluSg SINE Alu -9 301 1 2335 260 126 75 chr6 16904535 16905188 -172374366 - HAL1 LINE L1 -1632 875 257 12440 130 31 18 chr6 16905201 16907349 -172372205 + Tigger1 DNA MER2_type 237 2413 -5 404 154 173 19 chr6 16907530 16907634 -172371920 - MIR SINE MIR -20 242 123 215 351 106 39 chr6 16907688 16907896 -172371658 + L2 LINE L2 235 456 -2858 2264 101 19 3 chr6 16907942 16908249 -172371305 + AluSq SINE Alu 1 312 -1 2575 65 0 0 chr6 16908274 16908582 -172370972 - AluY SINE Alu -3 308 1 205 278 0 19 chr6 16908783 16908837 -172370717 + MER5A DNA MER1_type 8 60 -129 189 296 28 42 chr6 16908916 16908987 -172370567 + MER5B DNA MER1_type 85 154 -24 671 273 116 5 chr6 16909599 16909815 -172369739 - MIR SINE MIR -1 261 22 361 259 79 79 chr6 16911240 16911456 -172368098 - L2 LINE L2 -32 3240 3025 1612 125 16 22 chr6 16911675 16911996 -172367558 + L1PB4 LINE L1 4126 4444 -1702 607 163 98 24 chr6 16911996 16912119 -172367435 + AluJ SINE Alu 1 132 -180 3573 176 21 19 chr6 16912119 16912911 -172366643 + L1PB4 LINE L1 4469 5262 -884 543 135 23 60 chr6 16912901 16913034 -172366520 - L1M2 LINE L1 -631 5669 5542 * 1104 178 8 24 chr6 16913043 16913455 -172366099 + L1PB4 LINE L1 5267 6156 0 4736 129 38 5 chr6 16913460 16914271 -172365283 + L1MA5 LINE L1 5461 6298 -2 283 156 67 44 chr6 16914313 16914403 -172365151 + L1M4 LINE L1 5197 5288 -858 * 992 174 38 9 chr6 16914398 16914610 -172364944 + L1MC3 LINE L1 7399 7616 -169 922 90 7 0 chr6 16914689 16914833 -172364721 - L1MA1 LINE L1 -104 6198 6054 767 154 24 0 chr6 16915281 16915404 -172364150 - FLAM_C SINE Alu -7 126 1 203 297 47 16 chr6 16915765 16915829 -172363725 + MIR SINE MIR 127 192 -70 804 169 11 71 chr6 16918319 16918502 -172361052 + AluJ SINE Alu 137 308 -4 272 308 48 19 chr6 16918925 16919029 -172360525 + L2 LINE L2 3144 3250 -22 * 498 322 60 0 chr6 16919028 16919227 -172360327 - MIR SINE MIR -31 231 21 579 273 98 5 chr6 16921058 16921252 -172358302 + MIR SINE MIR 51 262 0 723 174 0 0 chr6 16921685 16921800 -172357754 - FLAM_A SINE Alu -18 115 1 222 167 0 33 chr6 16922708 16922768 -172356786 + A-rich Low_complexity Low_complexity 2 59 0 288 273 156 0 chr6 16922930 16923058 -172356496 + L3b LINE CR1 1316 1463 -120 2375 103 0 3 chr6 16923312 16923623 -172355931 - AluSq SINE Alu -3 310 1 244 310 159 44 chr6 16924075 16924188 -172355366 - L2 LINE L2 0 3272 3147 22 56 0 0 chr6 16924284 16924320 -172355234 + AT_rich Low_complexity Low_complexity 1 36 0 688 289 75 4 chr6 16924532 16924771 -172354783 - MIR SINE MIR 0 262 7 335 226 89 86 chr6 16925141 16925306 -172354248 - MIR SINE MIR -65 143 18 2384 75 0 7 chr6 16925552 16925847 -172353707 + AluSc SINE Alu 1 293 -16 308 254 122 37 chr6 16926392 16926581 -172352973 - L1ME3A LINE L1 -310 5929 5725 240 257 64 28 chr6 16926686 16926795 -172352759 - L1ME3A LINE L1 -470 5720 5608 455 285 54 14 chr6 16926879 16927100 -172352454 - L1ME3A LINE L1 -676 5555 5326 316 304 7 0 chr6 16927169 16927304 -172352250 - L1ME3A LINE L1 -1008 5207 5072 273 261 43 0 chr6 16927333 16927425 -172352129 + L1M4 LINE L1 4101 4196 -1950 384 280 136 8 chr6 16927530 16927773 -172351781 - L1ME3A LINE L1 -2122 4093 3820 4644 128 186 14 chr6 16928091 16928979 -172350575 + Tigger1 DNA MER2_type 1376 2416 -2 2007 142 0 3 chr6 16929252 16929534 -172350020 - AluSx SINE Alu -31 281 1 341 308 88 28 chr6 16929761 16929943 -172349611 - L1ME3A LINE L1 -4579 1817 1625 2162 103 14 0 chr6 16930039 16930330 -172349224 - AluSx SINE Alu -12 300 6 1166 277 137 40 chr6 16930377 16930511 -172349043 - L1ME3A LINE L1 -4862 1343 1223 319 228 13 0 chr6 16930511 16930590 -172348964 - MER116 DNA Mariner 0 80 1 1166 277 137 40 chr6 16930590 16931074 -172348480 - L1ME3A LINE L1 -4982 1223 787 2305 99 14 0 chr6 16931074 16931367 -172348187 - AluSx SINE Alu -15 297 1 1166 277 137 40 chr6 16931367 16931698 -172347856 - L1ME3A LINE L1 -5418 787 489 189 0 0 0 chr6 16931698 16931719 -172347835 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1166 277 137 40 chr6 16931719 16931905 -172347649 - L1ME3A LINE L1 -5716 489 96 2776 193 30 25 chr6 16932782 16933050 -172346504 + L1MC4a LINE L1 6781 7046 -762 2259 88 28 0 chr6 16933050 16933334 -172346220 - AluSg SINE Alu -18 292 1 2776 193 30 25 chr6 16933334 16933754 -172345800 + L1MC4a LINE L1 7046 7473 -335 951 184 32 0 chr6 16933755 16933913 -172345641 - AluJb SINE Alu -13 299 137 1224 229 82 3 chr6 16933915 16934234 -172345320 + L1MC4a LINE L1 7465 7808 0 221 366 24 0 chr6 16934635 16934717 -172344837 + L2 LINE L2 3189 3272 0 2604 176 56 14 chr6 16935589 16936105 -172343449 + L1M4c LINE L1 29 566 -5818 189 0 0 0 chr6 16936134 16936155 -172343399 + (TTTTTG)n Simple_repeat Simple_repeat 6 26 0 316 350 87 60 chr6 16936157 16936491 -172343063 + L1MB2 LINE L1 12 354 -6495 12618 224 30 20 chr6 16937219 16941175 -172338379 + L1P4 LINE L1 394 4504 -1719 273 57 0 0 chr6 16941175 16941210 -172338344 + (CA)n Simple_repeat Simple_repeat 2 36 0 12618 224 30 20 chr6 16941210 16942238 -172337316 + L1P4 LINE L1 4504 5520 -703 550 143 44 118 chr6 16942243 16942446 -172337108 + L1MB2 LINE L1 1446 1633 -5217 4714 205 75 25 chr6 16942446 16943858 -172335696 + L1MB2 LINE L1 3924 5406 -1442 3256 181 44 21 chr6 16943867 16944591 -172334963 + L1MB2 LINE L1 6131 6871 -2 1995 113 7 35 chr6 16945188 16945498 -172334056 - AluSq SINE Alu -12 301 1 1351 156 18 0 chr6 16945498 16945846 -172333708 - L1M4 LINE L1 -738 5440 5089 23 33 0 0 chr6 16947058 16947088 -172332466 + AT_rich Low_complexity Low_complexity 1 30 0 1768 152 7 7 chr6 16947109 16947398 -172332156 - AluJo SINE Alu -23 289 1 182 216 81 0 chr6 16947493 16947530 -172332024 - L2 LINE L2 -11 3302 3263 1510 196 28 11 chr6 16947553 16947839 -172331715 - AluJo SINE Alu -21 291 1 484 263 84 22 chr6 16948695 16948874 -172330680 - MER91B DNA MER1_type 0 190 1 240 282 59 35 chr6 16949685 16949887 -172329667 + L1MC5 LINE L1 7528 7734 -227 1912 149 0 10 chr6 16950046 16950341 -172329213 - AluJo SINE Alu -20 292 1 244 281 0 0 chr6 16950502 16950584 -172328970 + A-rich Low_complexity Low_complexity 1 82 0 206 221 73 29 chr6 16950907 16950975 -172328579 + MIR SINE MIR 121 191 -71 1409 153 9 0 chr6 16951470 16951686 -172327868 + AluJb SINE Alu 87 304 -8 540 186 0 62 chr6 16952596 16952709 -172326845 + L2 LINE L2 3207 3312 -1 193 239 0 113 chr6 16953126 16953197 -172326357 + L2 LINE L2 3210 3272 0 598 118 39 94 chr6 16954428 16954464 -172325090 - FLAM_A SINE Alu -169 142 106 2330 102 0 3 chr6 16954464 16954768 -172324786 - AluSg SINE Alu -7 303 1 598 118 39 94 chr6 16954768 16954858 -172324696 - FLAM_A SINE Alu -205 106 23 780 191 6 25 chr6 16956124 16956281 -172323273 + FRAM SINE Alu 1 154 -12 2019 76 47 4 chr6 16956294 16956570 -172322984 + AluSg SINE Alu 1 288 -22 494 251 129 12 chr6 16956755 16956918 -172322636 - MIR SINE MIR -52 210 29 431 204 164 7 chr6 16956925 16957077 -172322477 - MER5B DNA MER1_type -2 176 1 186 143 0 0 chr6 16957597 16957632 -172321922 + (CGGGG)n Simple_repeat Simple_repeat 3 37 0 265 291 17 8 chr6 16957851 16957968 -172321586 + C-rich Low_complexity Low_complexity 3 120 0 271 299 47 9 chr6 16958238 16958345 -172321209 + MIR SINE MIR 43 153 -109 * 1574 289 91 47 chr6 16958340 16959311 -172320243 + L2 LINE L2 1795 2807 -507 180 0 0 0 chr6 16959392 16959412 -172320142 + (T)n Simple_repeat Simple_repeat 1 20 0 832 138 12 12 chr6 16959682 16959842 -172319712 - MER96B DNA MER1_type? -20 397 238 386 245 11 11 chr6 16959902 16959996 -172319558 + L2 LINE L2 3178 3271 -1 22 88 0 0 chr6 16960805 16960862 -172318692 + AT_rich Low_complexity Low_complexity 1 57 0 2327 106 0 0 chr6 16961098 16961400 -172318154 - AluSx SINE Alu -9 303 2 529 238 150 12 chr6 16961492 16961652 -172317902 + MER5A DNA MER1_type 7 188 -1 7007 29 48 0 chr6 16961770 16962711 -172316843 + L1PA4 LINE L1 5174 6155 0 661 216 22 44 chr6 16963853 16964034 -172315520 - MER5B DNA MER1_type -1 177 1 210 23 70 23 chr6 16964310 16964353 -172315201 + T-rich Low_complexity Low_complexity 2 46 0 258 163 0 0 chr6 16964451 16964494 -172315060 + MER34 LTR ERV1 1 43 -499 1121 212 60 44 chr6 16964568 16964954 -172314600 + MER39 LTR ERV1 296 687 -20 212 250 105 13 chr6 16966315 16966391 -172313163 - MIR SINE MIR -1 261 179 873 186 6 13 chr6 16966512 16966668 -172312886 + AluJb SINE Alu 137 291 -21 217 238 95 0 chr6 16968833 16968896 -172310658 - MIR3 SINE MIR -11 197 129 2161 114 7 0 chr6 16969053 16969350 -172310204 + AluSq SINE Alu 1 299 -14 234 217 76 22 chr6 16971404 16971496 -172308058 + LTR67 LTR ERVL 459 555 -2 397 283 131 16 chr6 16972250 16972441 -172307113 - MIR SINE MIR -10 252 40 593 281 172 40 chr6 16972625 16972893 -172306661 + MLT1H1 LTR MaLR 1 232 -323 225 0 0 0 chr6 16972893 16972918 -172306636 + (GA)n Simple_repeat Simple_repeat 1 25 0 593 281 172 40 chr6 16972918 16973149 -172306405 + MLT1H1 LTR MaLR 232 555 0 590 299 42 6 chr6 16973799 16973993 -172305561 - MIR SINE MIR -58 204 7 2002 151 3 3 chr6 16974132 16974430 -172305124 - AluSq SINE Alu -15 298 1 27 0 0 0 chr6 16975289 16975316 -172304238 + AT_rich Low_complexity Low_complexity 1 27 0 357 265 10 0 chr6 16975369 16975467 -172304087 + MIR SINE MIR 51 149 -113 2221 112 23 7 chr6 16975812 16976115 -172303439 + AluSx SINE Alu 1 308 -4 2313 102 0 0 chr6 16976243 16976537 -172303017 - AluSx SINE Alu -18 294 1 655 122 9 19 chr6 16976661 16976768 -172302786 - L1PA11 LINE L1 -5 6169 6064 545 226 89 47 chr6 16976988 16977223 -172302331 + MIR SINE MIR 8 252 -10 251 264 217 0 chr6 16978264 16978370 -172301184 - L2 LINE L2 0 3272 3144 184 268 207 0 chr6 16978935 16979017 -172300537 + L2 LINE L2 3168 3266 -6 231 140 0 0 chr6 16979188 16979238 -172300316 + (CA)n Simple_repeat Simple_repeat 1 50 0 468 269 122 38 chr6 16979552 16979790 -172299764 - LTR16A1 LTR ERVL 0 457 200 1058 150 0 40 chr6 16979842 16980015 -172299539 + Charlie3 DNA MER1_type 2 167 -2543 3221 110 89 20 chr6 16980019 16980511 -172299043 + MER1A DNA MER1_type 1 526 -1 416 193 34 11 chr6 16980712 16980800 -172298754 + L2 LINE L2 2231 2320 -994 576 268 51 75 chr6 16980800 16981095 -172298459 - MLT1H LTR MaLR 0 549 262 211 182 0 0 chr6 16981096 16981129 -172298425 + polypurine Low_complexity Low_complexity 3 35 0 579 292 49 52 chr6 16981189 16981456 -172298098 - MER57B LTR ERV1 -168 266 1 551 192 88 0 chr6 16981456 16981581 -172297973 - MLT1H LTR MaLR -349 200 65 2283 36 4 14 chr6 16981662 16981941 -172297613 + AluY SINE Alu 17 292 -19 1582 64 0 20 chr6 16982218 16982421 -172297133 - AluY SINE Alu -7 304 106 774 122 0 0 chr6 16982421 16982528 -172297026 + AluJb SINE Alu 191 297 -15 2394 93 3 0 chr6 16983370 16983682 -172295872 + AluSq SINE Alu 1 313 0 532 215 137 17 chr6 16983830 16984053 -172295501 + MIR SINE MIR 15 262 0 2141 125 0 25 chr6 16984197 16984517 -172295037 + AluSx SINE Alu 1 312 0 842 208 64 101 chr6 16984555 16984853 -172294701 - MLT1C LTR MaLR 0 467 181 5725 133 60 33 chr6 16984853 16986388 -172293166 + pTR5 LTR ERV1 744 2438 0 370 178 0 27 chr6 16986424 16986497 -172293057 - MLT1C LTR MaLR -340 165 95 1692 126 0 8 chr6 16986988 16987227 -172292327 - AluSq SINE Alu -76 237 1 2836 13 0 0 chr6 16987460 16987766 -172291788 + AluYb8 SINE Alu 1 306 -12 696 214 112 29 chr6 16989291 16989497 -172290057 + LTR16B LTR ERVL 242 464 0 935 222 61 26 chr6 16989604 16990157 -172289397 + MLT2F LTR ERVL 3 663 0 2136 138 0 3 chr6 16990640 16990951 -172288603 - AluJb SINE Alu -2 310 1 678 242 31 0 chr6 16991625 16991786 -172287768 + L1ME3A LINE L1 5992 6157 -13 1155 261 67 17 chr6 16991916 16992276 -172287278 + MLT1I LTR MaLR 3 380 -29 578 251 213 0 chr6 16992463 16992674 -172286880 - MLT1L LTR MaLR -8 607 352 648 211 26 33 chr6 16992674 16992909 -172286645 - MER31-int LTR ERV1 -327 5936 4430 219 69 0 0 chr6 16992955 16992984 -172286570 + (CA)n Simple_repeat Simple_repeat 1 29 0 291 291 156 0 chr6 16993240 16993381 -172286173 + MIR SINE MIR 79 241 -21 282 292 0 0 chr6 16993408 16993504 -172286050 + MIR SINE MIR 166 261 -1 196 288 88 16 chr6 16994063 16994188 -172285366 - MIR SINE MIR -10 252 119 7414 191 58 100 chr6 16994891 16995048 -172284506 - L1MC4a LINE L1 -1 7807 7645 1694 186 14 10 chr6 16995048 16995344 -172284210 - AluJo SINE Alu -15 297 1 7414 191 58 100 chr6 16995344 16996076 -172283478 - L1MC4a LINE L1 -163 7645 6884 1858 186 0 0 chr6 16996076 16996377 -172283177 - AluJo SINE Alu -7 305 5 7414 191 58 100 chr6 16996377 16996834 -172282720 - L1MC4a LINE L1 -924 6884 6409 530 236 9 0 chr6 16996834 16996940 -172282614 + MER81 DNA DNA 1 107 -7 7414 191 58 100 chr6 16996940 16997285 -172282269 - L1MC4a LINE L1 -1399 6409 6051 2089 112 43 23 chr6 16997285 16997590 -172281964 - AluSx SINE Alu -1 311 1 7414 191 58 100 chr6 16997590 16998114 -172281440 - L1MC4a LINE L1 -1757 6051 5581 462 210 166 25 chr6 16998216 16998373 -172281181 + MER5A DNA MER1_type 4 182 -7 421 203 51 65 chr6 16998806 16998944 -172280610 + MER5B DNA MER1_type 17 152 -26 1976 142 41 16 chr6 16998966 16999332 -172280222 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr6 16999380 16999403 -172280151 + AT_rich Low_complexity Low_complexity 1 23 0 49 76 0 0 chr6 16999645 16999750 -172279804 + AT_rich Low_complexity Low_complexity 1 105 0 1121 310 73 17 chr6 16999752 17000384 -172279170 + L1ME4a LINE L1 5280 5946 -175 1741 184 70 48 chr6 17000481 17000937 -172278617 - MER31B LTR ERV1 0 466 1 2564 196 84 92 chr6 17000942 17001778 -172277776 - MER31B-int LTR ERV1 -25 4911 4083 2425 109 18 0 chr6 17001778 17002107 -172277447 + THE1B LTR MaLR 1 335 -29 1625 165 53 83 chr6 17002122 17002397 -172277157 - MER31B-int LTR ERV1 -906 4030 3812 806 181 0 0 chr6 17002397 17002524 -172277030 - FLAM_C SINE Alu -6 127 1 1625 165 53 83 chr6 17002524 17002663 -172276891 - MER31B-int LTR ERV1 -1124 3812 3670 1622 203 75 34 chr6 17002661 17002887 -172276667 - MER31B-int LTR ERV1 -2747 2189 1974 * 1860 164 0 7 chr6 17002887 17003179 -172276375 - AluJb SINE Alu -19 293 4 1622 203 75 34 chr6 17003179 17003488 -172276066 - MER31B-int LTR ERV1 -2962 1974 1632 1872 134 9 6 chr6 17003503 17003823 -172275731 - MER31B-int LTR ERV1 -3487 1449 1129 3101 213 45 41 chr6 17003832 17004588 -172274966 - MER31B-int LTR ERV1 -3981 955 197 515 128 73 37 chr6 17004563 17004672 -172274882 - MER31B-int LTR ERV1 -4655 281 169 * 2233 119 0 0 chr6 17004718 17005020 -172274534 - AluSx SINE Alu -10 302 1 582 220 53 8 chr6 17005071 17005203 -172274351 - MER31B-int LTR ERV1 -4764 172 35 1816 206 40 53 chr6 17005272 17005699 -172273855 - MER31B LTR ERV1 0 466 44 3920 39 0 0 chr6 17005699 17006164 -172273390 + L1PA4 LINE L1 5687 6151 -4 1816 206 40 53 chr6 17006164 17006208 -172273346 - MER31B LTR ERV1 -422 44 1 21 0 0 0 chr6 17006377 17006398 -172273156 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 17006439 17006473 -172273081 + AT_rich Low_complexity Low_complexity 1 34 0 629 204 15 75 chr6 17006750 17006951 -172272603 + MER53 DNA DNA 1 189 0 223 227 0 0 chr6 17007230 17007274 -172272280 + G-rich Low_complexity Low_complexity 1 44 0 530 303 120 8 chr6 17008285 17008519 -172271035 - MIR SINE MIR 0 262 3 1813 136 42 32 chr6 17008719 17009028 -172270526 + AluSx SINE Alu 1 312 0 431 301 23 27 chr6 17009514 17009733 -172269821 - Charlie8 DNA MER1_type -2190 227 10 360 0 0 0 chr6 17010598 17010638 -172268916 + (TG)n Simple_repeat Simple_repeat 2 41 0 1944 125 0 82 chr6 17011275 17011604 -172267950 - AluSg SINE Alu -8 302 1 812 241 176 0 chr6 17013303 17013564 -172265990 + LTR16A LTR ERVL 104 410 -40 245 353 74 0 chr6 17013799 17013921 -172265633 - MIR SINE MIR -48 214 84 259 291 118 8 chr6 17015025 17015152 -172264402 + MIR3 SINE MIR 64 204 -4 297 0 0 0 chr6 17015211 17015244 -172264310 + (TC)n Simple_repeat Simple_repeat 2 34 0 272 304 29 58 chr6 17015739 17015877 -172263677 + MIR SINE MIR 53 186 -76 1435 142 46 27 chr6 17015921 17016182 -172263372 - Tigger2 DNA MER2_type -2 2716 2451 1575 85 0 0 chr6 17016282 17016471 -172263083 - AluSq SINE Alu -123 190 2 485 232 155 13 chr6 17016563 17016718 -172262836 + MER5A DNA MER1_type 7 183 -6 7165 29 48 0 chr6 17016841 17017782 -172261772 + L1PA4 LINE L1 5174 6155 0 685 199 33 55 chr6 17018924 17019105 -172260449 - MER5B DNA MER1_type -1 177 1 210 23 70 23 chr6 17019381 17019424 -172260130 + T-rich Low_complexity Low_complexity 2 46 0 279 179 40 51 chr6 17019522 17019621 -172259933 + MER34 LTR ERV1 1 43 -499 1269 202 94 34 chr6 17019639 17020040 -172259514 + MER39 LTR ERV1 296 585 0 190 250 105 13 chr6 17021386 17021462 -172258092 - MIR SINE MIR -1 261 179 877 186 6 13 chr6 17021583 17021739 -172257815 + AluJb SINE Alu 137 291 -21 194 238 95 0 chr6 17023904 17023967 -172255587 - MIR3 SINE MIR -11 197 129 2185 114 7 0 chr6 17024124 17024421 -172255133 + AluSq SINE Alu 1 299 -14 273 217 76 22 chr6 17026475 17026567 -172252987 + LTR67 LTR ERVL 459 555 -2 388 283 131 16 chr6 17027321 17027512 -172252042 - MIR SINE MIR -10 252 40 765 298 119 34 chr6 17027696 17027964 -172251590 + MLT1F LTR MaLR 1 245 -297 225 0 0 0 chr6 17027964 17027989 -172251565 + (GA)n Simple_repeat Simple_repeat 1 25 0 765 298 119 34 chr6 17027989 17028214 -172251340 + MLT1F LTR MaLR 245 536 -6 577 297 43 5 chr6 17028870 17029055 -172250499 - MIR SINE MIR -58 204 13 1980 151 3 3 chr6 17029203 17029501 -172250053 - AluSq SINE Alu -15 298 1 27 0 0 0 chr6 17030360 17030387 -172249167 + AT_rich Low_complexity Low_complexity 1 27 0 392 283 80 14 chr6 17030400 17030538 -172249016 + MIR SINE MIR 3 149 -113 2207 112 23 7 chr6 17030883 17031186 -172248368 + AluSx SINE Alu 1 308 -4 2293 102 0 0 chr6 17031314 17031608 -172247946 - AluSx SINE Alu -18 294 1 690 122 9 19 chr6 17031732 17031839 -172247715 - L1PA11 LINE L1 -5 6169 6064 616 221 94 51 chr6 17032059 17032294 -172247260 + MIR SINE MIR 8 252 -10 288 264 217 0 chr6 17033335 17033441 -172246113 - L2 LINE L2 0 3272 3144 187 329 57 0 chr6 17033559 17033629 -172245925 - L2 LINE L2 -195 3077 3004 183 322 34 0 chr6 17033796 17033855 -172245699 + L2 LINE L2 2992 3052 -220 222 297 153 18 chr6 17033977 17034088 -172245466 + L2 LINE L2 3141 3266 -6 231 140 0 0 chr6 17034259 17034309 -172245245 + (CA)n Simple_repeat Simple_repeat 1 50 0 456 269 122 38 chr6 17034623 17034861 -172244693 - LTR16A1 LTR ERVL 0 457 200 1042 150 0 40 chr6 17034913 17035086 -172244468 + Charlie3 DNA MER1_type 2 167 -2543 3416 110 89 20 chr6 17035090 17035582 -172243972 + MER1A DNA MER1_type 1 526 -1 445 193 34 11 chr6 17035783 17035871 -172243683 + L2 LINE L2 2231 2320 -994 576 268 51 75 chr6 17035871 17036166 -172243388 - MLT1H LTR MaLR 0 549 262 211 182 0 0 chr6 17036167 17036200 -172243354 + polypurine Low_complexity Low_complexity 3 35 0 580 292 49 52 chr6 17036260 17036527 -172243027 - MER57B LTR ERV1 -168 266 1 551 192 88 0 chr6 17036527 17036652 -172242902 - MLT1H LTR MaLR -349 200 65 2253 36 4 14 chr6 17036733 17037012 -172242542 + AluY SINE Alu 17 292 -19 2443 71 0 13 chr6 17037289 17037597 -172241957 - AluY SINE Alu -7 304 1 615 168 69 0 chr6 17037632 17037763 -172241791 - HsTC2 DNA Tc2 -178 1720 1581 279 208 0 0 chr6 17037779 17037832 -172241722 - HsTC2 DNA Tc2 -542 1356 1304 430 266 141 8 chr6 17037849 17037977 -172241577 - HsTC2 DNA Tc2 -1753 145 1 2290 73 42 0 chr6 17038014 17038302 -172241252 - AluY SINE Alu -11 300 1 739 222 130 17 chr6 17038591 17038821 -172240733 + MER2 DNA MER2_type 89 344 -1 2210 119 0 0 chr6 17038865 17039158 -172240396 + AluSx SINE Alu 1 293 -19 34 24 0 0 chr6 17039215 17039256 -172240298 + AT_rich Low_complexity Low_complexity 1 41 0 1071 157 35 0 chr6 17039304 17039476 -172240078 + AluJb SINE Alu 109 286 -26 3657 156 19 3 chr6 17039500 17040091 -172239463 - L1MB5 LINE L1 -76 6098 5499 2098 96 0 4 chr6 17042002 17042303 -172237251 - AluSc SINE Alu 0 300 1 271 264 40 56 chr6 17042468 17042593 -172236961 - HAL1 LINE L1 -145 2362 2240 468 331 14 0 chr6 17042593 17042732 -172236822 - MIR SINE MIR -97 165 25 4029 102 10 142 chr6 17042761 17043092 -172236462 + LTR8 LTR ERV1 3 376 -315 2387 90 0 6 chr6 17043092 17043403 -172236151 + AluSg1 SINE Alu 1 309 0 4029 102 10 142 chr6 17043403 17043696 -172235858 + LTR8 LTR ERV1 376 502 -189 2626 55 0 0 chr6 17043696 17044007 -172235547 + AluY SINE Alu 1 311 0 4029 102 10 142 chr6 17044007 17044175 -172235379 + LTR8 LTR ERV1 502 691 0 2309 115 0 3 chr6 17044248 17044560 -172234994 + AluSx SINE Alu 1 311 -1 627 130 0 0 chr6 17044600 17044692 -172234862 + MER53 DNA DNA 23 114 -75 1241 197 87 79 chr6 17044744 17044870 -172234684 - MER39 LTR ERV1 0 707 583 1751 166 0 42 chr6 17044870 17045183 -172234371 + AluJo SINE Alu 1 300 -12 1241 197 87 79 chr6 17045183 17045437 -172234117 - MER39 LTR ERV1 -124 583 324 270 266 73 37 chr6 17045433 17045542 -172234012 - LTR48B LTR ERV1 -531 113 1 * 29 0 0 0 chr6 17045922 17045951 -172233603 + AT_rich Low_complexity Low_complexity 1 29 0 2331 108 3 16 chr6 17045951 17046267 -172233287 + AluSx SINE Alu 1 312 0 320 247 62 0 chr6 17046320 17046417 -172233137 + MIR SINE MIR 105 207 -55 957 251 114 80 chr6 17047258 17047970 -172231584 + L1ME4a LINE L1 5385 6120 -1 2005 179 59 42 chr6 17048554 17048979 -172230575 - MSTB1 LTR MaLR 0 432 1 541 149 0 43 chr6 17049362 17049456 -172230098 + FLAM_C SINE Alu 49 138 -5 2300 105 3 0 chr6 17050244 17050549 -172229005 - AluY SINE Alu -5 306 1 1689 179 43 0 chr6 17050718 17050998 -172228556 + AluJb SINE Alu 1 292 -20 1919 221 187 25 chr6 17051251 17051935 -172227619 + LTR50 LTR ERVL 1 795 0 1031 190 0 15 chr6 17052222 17052417 -172227137 - AluJo SINE Alu -8 304 113 2052 204 42 44 chr6 17052417 17052945 -172226609 - L1M4 LINE L1 -1057 5089 4563 2012 182 34 20 chr6 17052947 17053392 -172226162 - Charlie1a DNA MER1_type -529 926 476 1291 200 141 40 chr6 17053392 17053465 -172226089 + L1M4 LINE L1 2176 2240 -3906 1237 134 27 5 chr6 17053465 17053651 -172225903 + L1PA15 LINE L1 5976 6165 0 1291 200 141 40 chr6 17053651 17053952 -172225602 + L1M4 LINE L1 2240 2588 -3558 401 156 62 94 chr6 17053954 17054050 -172225504 - Charlie1a DNA MER1_type -962 493 401 14078 122 85 16 chr6 17054051 17054715 -172224839 + Tigger2 DNA MER2_type 2 619 -2099 2269 118 0 3 chr6 17054715 17055028 -172224526 + AluSx SINE Alu 1 312 0 14078 122 85 16 chr6 17055028 17056669 -172222885 + Tigger2 DNA MER2_type 619 2466 -252 998 97 7 13 chr6 17056666 17056820 -172222734 - Tigger2 DNA MER2_type -84 2634 2482 * 853 148 0 0 chr6 17056820 17056948 -172222606 + FLAM_C SINE Alu 11 138 -5 1957 206 9 45 chr6 17057005 17057427 -172222127 - Charlie1a DNA MER1_type -1048 407 1 594 110 49 0 chr6 17057432 17057514 -172222040 + AluSx SINE Alu 2 87 -226 741 147 0 0 chr6 17057521 17057637 -172221917 + Tigger2 DNA MER2_type 1780 1895 -823 1349 144 5 5 chr6 17057645 17057853 -172221701 + AluSx SINE Alu 88 295 -17 205 307 148 37 chr6 17058053 17058297 -172221257 - L2 LINE L2 -449 2865 2595 2065 153 30 12 chr6 17058733 17059066 -172220488 + MER7A DNA MER2_type 1 337 -9 2138 115 0 3 chr6 17059130 17059425 -172220129 - AluSq SINE Alu -19 294 1 1081 284 95 22 chr6 17059426 17059785 -172219769 + L2 LINE L2 2593 2977 -337 332 234 0 0 chr6 17059897 17059961 -172219593 + L2 LINE L2 3250 3313 0 211 176 0 0 chr6 17060090 17060124 -172219430 + C-rich Low_complexity Low_complexity 4 37 0 662 124 0 9 chr6 17060128 17060241 -172219313 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 2987 150 21 24 chr6 17060330 17060798 -172218756 + MLT1C LTR MaLR 1 467 0 2150 121 0 7 chr6 17060875 17061173 -172218381 - AluSx SINE Alu -16 296 1 185 308 13 83 chr6 17061337 17061403 -172218151 - L2 LINE L2 -210 3062 2993 2062 141 3 6 chr6 17061403 17061716 -172217838 - AluJo SINE Alu 0 312 1 185 308 13 83 chr6 17061716 17061805 -172217749 - L2 LINE L2 -279 2993 2918 946 251 207 16 chr6 17062125 17062511 -172217043 + LTR16B LTR ERVL 1 460 -4 1429 199 26 85 chr6 17063505 17063893 -172215661 + MLT1A1 LTR MaLR 1 365 0 357 268 188 35 chr6 17063912 17064381 -172215173 - L2 LINE L2 -1 3312 2742 191 271 43 86 chr6 17064533 17064603 -172214951 + L2 LINE L2 3242 3308 -5 276 236 56 0 chr6 17064958 17065030 -172214524 + LTR67 LTR ERVL 2 77 -480 551 284 7 0 chr6 17065288 17065443 -172214111 + LTR67 LTR ERVL 402 557 0 407 325 31 6 chr6 17066600 17066763 -172212791 + ERVL LTR ERVL 2738 2904 -2860 207 0 0 0 chr6 17066764 17066787 -172212767 + (TG)n Simple_repeat Simple_repeat 2 24 0 264 262 141 20 chr6 17066965 17067114 -172212440 + MLT1J LTR MaLR 1 167 -344 302 187 187 126 chr6 17067174 17067372 -172212182 + MLT1J LTR MaLR 277 486 -25 682 290 36 9 chr6 17067389 17067610 -172211944 + ERVL LTR ERVL 3027 3253 -2401 1016 279 113 22 chr6 17067669 17068260 -172211294 - L1M4 LINE L1 -1314 4832 4188 1231 121 6 0 chr6 17068285 17068458 -172211096 + AluSg/x SINE Alu 131 304 -8 290 275 30 53 chr6 17068485 17068616 -172210938 - L1M4 LINE L1 -1992 4154 4027 192 77 0 0 chr6 17068645 17068671 -172210883 + (TG)n Simple_repeat Simple_repeat 2 27 0 622 293 135 40 chr6 17068677 17069058 -172210496 - L1MC/D LINE L1 -683 5468 5125 2346 97 3 0 chr6 17069058 17069357 -172210197 - AluSp SINE Alu -13 300 1 622 293 135 40 chr6 17069357 17070555 -172208999 - L1MC/D LINE L1 -1026 5125 3875 24 0 0 0 chr6 17070626 17070650 -172208904 + AT_rich Low_complexity Low_complexity 1 24 0 407 316 76 46 chr6 17070767 17071308 -172208246 - L1MC/D LINE L1 -2421 3725 3169 711 153 18 92 chr6 17071655 17071818 -172207736 - MER106B DNA MER1_type -908 151 1 2704 104 30 3 chr6 17072624 17072989 -172206565 - THE1C LTR MaLR 0 375 1 1042 275 121 38 chr6 17073078 17073525 -172206029 + LTR33A LTR ERVL 2 485 -38 281 262 12 12 chr6 17073807 17073891 -172205663 + L2 LINE L2 3188 3271 -1 1780 191 110 45 chr6 17073948 17074017 -172205537 + Charlie4a DNA MER1_type 6 69 -1892 2302 79 13 23 chr6 17074017 17074321 -172205233 - AluY SINE Alu -10 301 1 2278 102 7 0 chr6 17074321 17074615 -172204939 - AluSx SINE Alu -16 296 1 1780 191 110 45 chr6 17074615 17075016 -172204538 + Charlie4a DNA MER1_type 68 508 0 315 275 194 25 chr6 17075043 17075203 -172204351 + MIR SINE MIR 49 235 -27 252 0 0 0 chr6 17075535 17075563 -172203991 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 6951 63 40 25 chr6 17075563 17077345 -172202209 - SVA Other Other -518 1367 6 344 169 62 0 chr6 17077747 17077812 -172201742 + Tigger2 DNA MER2_type 1 69 -2649 * 1220 93 34 5 chr6 17077810 17078014 -172201540 + Tigger2 DNA MER2_type 2280 2489 -229 555 201 179 0 chr6 17178728 17178862 -172100692 + MER5A DNA MER1_type 9 166 -23 2114 116 0 23 chr6 17178889 17179190 -172100364 + AluSg SINE Alu 1 294 -16 314 203 0 40 chr6 17180172 17180246 -172099308 + 7SK RNA RNA 3 73 -120 214 155 0 28 chr6 17180780 17180851 -172098703 + (CA)n Simple_repeat Simple_repeat 1 69 0 3866 102 34 51 chr6 17180903 17181513 -172098041 + MER4A LTR ERV1 1 600 0 375 171 18 9 chr6 17181564 17181675 -172097879 + (CA)n Simple_repeat Simple_repeat 2 113 0 2255 109 0 0 chr6 17182128 17182435 -172097119 - AluSx SINE Alu 0 307 1 341 302 26 55 chr6 17182470 17182627 -172096927 + MIR SINE MIR 37 187 -75 2094 151 0 10 chr6 17182627 17182938 -172096616 - AluJb SINE Alu -4 308 1 341 302 26 55 chr6 17182938 17182981 -172096573 + MIR SINE MIR 187 230 -32 234 0 0 0 chr6 17183036 17183062 -172096492 + (CA)n Simple_repeat Simple_repeat 2 27 0 221 226 58 15 chr6 17183063 17183200 -172096354 + (TTATA)n Simple_repeat Simple_repeat 2 144 0 2378 82 0 10 chr6 17183424 17183728 -172095826 - AluSc SINE Alu -8 301 1 1646 248 100 75 chr6 17184346 17185208 -172094346 + L1MC4a LINE L1 5283 6165 -1643 335 277 87 33 chr6 17185437 17185621 -172093933 + MIR SINE MIR 8 201 -61 180 0 0 0 chr6 17186398 17186418 -172093136 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 182 182 0 0 chr6 17186553 17186586 -172092968 - L3 LINE CR1 -15 1562 1530 * 347 280 208 0 chr6 17186562 17186687 -172092867 - MIR3 SINE MIR -28 180 30 225 0 0 0 chr6 17186780 17186805 -172092749 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 588 296 140 40 chr6 17187429 17187851 -172091703 - MLT1J LTR MaLR -17 494 31 1138 207 83 109 chr6 17189023 17189599 -172089955 + MER34B LTR ERV1 5 565 0 183 308 189 0 chr6 17190605 17190748 -172088806 + MIR SINE MIR 77 246 -16 1704 152 0 79 chr6 17190751 17191079 -172088475 - AluJo SINE Alu -8 304 3 763 166 22 43 chr6 17191826 17191965 -172087589 + MSTB1 LTR MaLR 292 427 -5 967 177 0 0 chr6 17192072 17192230 -172087324 - FRAM SINE Alu -6 170 13 2089 102 6 57 chr6 17193251 17193565 -172085989 + AluSx SINE Alu 1 298 -14 192 292 188 0 chr6 17193570 17193666 -172085888 - L2 LINE L2 0 3313 3200 335 277 124 37 chr6 17195162 17195502 -172084052 + L2 LINE L2 2861 3290 -23 183 80 0 0 chr6 17195506 17195531 -172084023 + (TG)n Simple_repeat Simple_repeat 1 25 0 297 312 70 19 chr6 17196728 17196885 -172082669 - MIR3 SINE MIR -5 203 39 22 35 0 0 chr6 17197322 17197351 -172082203 + AT_rich Low_complexity Low_complexity 1 29 0 39 60 0 0 chr6 17197544 17197611 -172081943 + AT_rich Low_complexity Low_complexity 1 67 0 280 218 141 0 chr6 17197677 17197755 -172081799 + MIR3 SINE MIR 107 195 -13 2134 133 7 0 chr6 17197984 17198278 -172081276 - AluSx SINE Alu -12 300 5 2180 102 17 3 chr6 17198882 17199177 -172080377 + AluSp SINE Alu 1 299 -14 335 154 15 0 chr6 17199206 17199271 -172080283 + GA-rich Low_complexity Low_complexity 3 68 0 436 124 146 22 chr6 17199512 17199594 -172079960 + AluSp/q SINE Alu 211 306 -7 2717 139 59 2 chr6 17199594 17200084 -172079470 + L1MB2 LINE L1 5652 6169 -2 189 367 11 0 chr6 17201548 17201638 -172077916 - MIR SINE MIR -82 126 36 4996 143 53 5 chr6 17201692 17202478 -172077076 - LTR1B LTR ERV1 0 826 3 570 164 10 0 chr6 17202847 17202951 -172076603 + MER53 DNA DNA 1 105 -84 332 137 6 246 chr6 17204008 17204134 -172075420 - L2 LINE L2 0 3313 3239 2206 120 3 3 chr6 17204134 17204434 -172075120 + AluJb SINE Alu 1 300 -12 332 137 6 246 chr6 17204434 17204482 -172075072 - L2 LINE L2 -74 3239 3181 207 111 0 28 chr6 17204556 17204592 -172074962 + (TA)n Simple_repeat Simple_repeat 1 35 0 1902 152 6 19 chr6 17204592 17204907 -172074647 - AluSx SINE Alu -1 311 1 559 221 58 29 chr6 17204917 17205125 -172074429 - L2 LINE L2 -68 3245 3032 339 277 115 76 chr6 17205181 17205538 -172074016 + MLT1K LTR MaLR 204 574 -14 1341 202 0 0 chr6 17206443 17206666 -172072888 - MER58A DNA MER1_type 0 224 2 1451 156 140 89 chr6 17206946 17207382 -172072172 + MLT1C LTR MaLR 1 458 -9 2411 98 3 0 chr6 17207753 17208058 -172071496 - AluSp SINE Alu -7 306 1 331 253 53 32 chr6 17208167 17208262 -172071292 - L2 LINE L2 -2 3311 3215 43446 37 22 1 chr6 17208691 17214716 -172064838 - L1PA3 LINE L1 -4 6151 1 382 272 10 0 chr6 17215013 17215116 -172064438 + MIR SINE MIR 138 241 -21 203 267 50 3 chr6 17215991 17216094 -172063460 - MIR SINE MIR -66 142 35 256 197 167 0 chr6 17216173 17216239 -172063315 - MIR3 SINE MIR -118 90 14 1697 132 92 4 chr6 17217180 17217461 -172062093 + L1MC1 LINE L1 6018 6323 -10 691 157 0 67 chr6 17217461 17217595 -172061959 + AluJb SINE Alu 1 125 -187 2351 128 11 93 chr6 17217709 17218116 -172061438 - L1PB4 LINE L1 -5 6151 5783 231 88 0 0 chr6 17218116 17218150 -172061404 + (TA)n Simple_repeat Simple_repeat 2 35 0 2351 128 11 93 chr6 17218150 17218195 -172061359 - L1PB4 LINE L1 -373 5783 5736 1805 155 0 43 chr6 17219262 17219584 -172059970 - AluJb SINE Alu -4 308 1 304 183 17 5 chr6 17219776 17219893 -172059661 - MER5B DNA MER1_type 0 178 2 3360 193 42 3 chr6 17220189 17220851 -172058703 - L1MC3 LINE L1 -11 7774 7087 2161 180 51 18 chr6 17221128 17221579 -172057975 + MLT1C LTR MaLR 1 466 -1 2059 125 10 13 chr6 17221625 17221795 -172057759 - AluSx SINE Alu -9 303 133 189 74 0 0 chr6 17221795 17221822 -172057732 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2059 125 10 13 chr6 17221822 17221955 -172057599 - AluSx SINE Alu -179 133 1 885 300 36 33 chr6 17222273 17222580 -172056974 - LTR16A LTR ERVL -15 435 128 276 206 32 0 chr6 17222753 17222816 -172056738 - MLT1C LTR MaLR -399 68 4 615 226 0 0 chr6 17222982 17223088 -172056466 + LTR39 LTR ERV1 673 778 -5 4435 163 52 4 chr6 17223626 17224373 -172055181 + LTR39 LTR ERV1 1 783 0 335 237 59 74 chr6 17224825 17224960 -172054594 + MIR SINE MIR 57 189 -73 378 42 0 0 chr6 17225898 17225946 -172053608 + (CA)n Simple_repeat Simple_repeat 2 49 0 210 91 0 0 chr6 17226009 17226042 -172053512 + (TC)n Simple_repeat Simple_repeat 2 34 0 1585 151 96 0 chr6 17226480 17226771 -172052783 - MER50 LTR ERV1 -415 319 1 1693 191 7 0 chr6 17227151 17227454 -172052100 + AluJo SINE Alu 1 305 -7 2142 111 3 0 chr6 17227662 17227950 -172051604 + AluSq SINE Alu 1 289 -24 199 289 19 0 chr6 17228101 17228153 -172051401 - MIR SINE MIR -70 138 86 2192 176 50 23 chr6 17228157 17228606 -172050948 + MLT1C LTR MaLR 7 549 0 2602 86 18 39 chr6 17228648 17228993 -172050561 - THE1C LTR MaLR 0 375 37 2175 133 0 0 chr6 17228993 17229294 -172050260 + AluSx SINE Alu 1 301 -11 2602 86 18 39 chr6 17229294 17229331 -172050223 - THE1C LTR MaLR -338 37 1 3922 125 35 65 chr6 17229418 17230130 -172049424 - LTR8 LTR ERV1 0 691 1 2835 123 23 44 chr6 17230283 17230935 -172048619 - LTR8A LTR ERV1 0 727 1 4865 87 11 53 chr6 17232020 17232205 -172047349 - LTR8 LTR ERV1 0 691 500 2186 105 3 0 chr6 17232205 17232500 -172047054 + AluSx SINE Alu 1 296 -16 4865 87 11 53 chr6 17232500 17233035 -172046519 - LTR8 LTR ERV1 -191 500 1 282 141 26 13 chr6 17234217 17234295 -172045259 + (TG)n Simple_repeat Simple_repeat 2 80 0 749 161 32 0 chr6 17234370 17234525 -172045029 + L1MA4A LINE L1 6132 6291 -12 257 372 37 12 chr6 17234897 17235061 -172044493 + MIR SINE MIR 29 196 -66 191 61 30 0 chr6 17235853 17235886 -172043668 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 530 246 59 69 chr6 17235971 17236174 -172043380 - L2 LINE L2 -2 3311 3111 255 278 259 4 chr6 17236304 17236574 -172042980 - L2 LINE L2 -48 3265 2927 265 323 83 0 chr6 17237321 17237417 -172042137 - MIR SINE MIR -67 141 38 784 149 104 26 chr6 17237525 17237679 -172041875 + MER5B DNA MER1_type 13 178 0 21 0 0 0 chr6 17237848 17237869 -172041685 + AT_rich Low_complexity Low_complexity 1 21 0 2367 103 0 0 chr6 17238212 17238513 -172041041 + AluSg SINE Alu 1 301 -9 1142 191 4 52 chr6 17240238 17240278 -172039276 - MER58A DNA MER1_type -2199 221 181 1815 116 3 78 chr6 17240278 17240597 -172038957 - AluY SINE Alu -16 295 1 1142 191 4 52 chr6 17240597 17240787 -172038767 - MER58A DNA MER1_type -2239 181 2 399 245 142 0 chr6 17240871 17240977 -172038577 + MIR SINE MIR 2 122 -140 180 152 0 0 chr6 17241020 17241053 -172038501 + MIR SINE MIR 129 161 -101 454 321 20 10 chr6 17241054 17241250 -172038304 - LTR16C LTR ERVL 0 491 294 199 329 0 37 chr6 17241401 17241483 -172038071 + MIR SINE MIR 161 239 -23 2120 123 10 0 chr6 17241910 17242203 -172037351 - AluSx SINE Alu -16 296 1 474 267 151 29 chr6 17242913 17243119 -172036435 - MLT1L LTR MaLR 0 615 385 1786 141 17 37 chr6 17243375 17243673 -172035881 + AluJo SINE Alu 1 292 -20 196 181 111 56 chr6 17243710 17243782 -172035772 - MIR SINE MIR -73 189 114 423 177 38 0 chr6 17244319 17244398 -172035156 - MER103 DNA DNA -48 118 37 2146 135 3 0 chr6 17244520 17244831 -172034723 + AluSx SINE Alu 1 312 0 776 218 18 0 chr6 17245012 17245182 -172034372 + MER5B DNA MER1_type 1 173 -5 279 238 152 19 chr6 17245809 17245914 -172033640 - MIR SINE MIR -26 236 118 227 324 0 0 chr6 17245909 17245980 -172033574 + MIR SINE MIR 176 246 -16 * 342 113 32 0 chr6 17245999 17246061 -172033493 - MIR3 SINE MIR -8 200 137 2294 85 3 3 chr6 17246078 17246373 -172033181 + AluSp SINE Alu 1 295 -18 1842 167 10 10 chr6 17246715 17247026 -172032528 + AluJb SINE Alu 1 311 -1 854 274 25 61 chr6 17247176 17247453 -172032101 + LTR16A LTR ERVL 18 284 -166 656 171 62 16 chr6 17248598 17248727 -172030827 - MER58B DNA MER1_type 0 341 207 3864 136 102 107 chr6 17249469 17250853 -172028701 - pTR5 LTR ERV1 -3 2435 729 321 290 77 24 chr6 17251097 17251345 -172028209 + L1MC/D LINE L1 5123 5383 -763 257 362 58 31 chr6 17252175 17252432 -172027122 + L1MC/D LINE L1 5526 5789 -2019 2109 140 0 9 chr6 17252432 17252747 -172026807 + AluSx SINE Alu 1 312 0 27 0 0 0 chr6 17252989 17253016 -172026538 + AT_rich Low_complexity Low_complexity 1 27 0 1889 206 73 108 chr6 17253535 17254007 -172025547 - L1ME3 LINE L1 -2 6160 5673 2064 194 43 62 chr6 17254007 17254537 -172025017 + MLT2B1 LTR ERVL 1 520 0 1889 206 73 108 chr6 17254537 17254567 -172024987 - L1ME3 LINE L1 -489 5673 5643 2022 159 0 0 chr6 17254567 17254863 -172024691 - AluSx SINE Alu -16 296 1 1889 206 73 108 chr6 17254863 17255247 -172024307 - L1ME3 LINE L1 -519 5643 5304 241 231 0 0 chr6 17255525 17255577 -172023977 + L2 LINE L2 3212 3263 -9 2330 118 118 20 chr6 17256300 17256690 -172022864 + MSTA LTR MaLR 1 428 0 586 273 34 0 chr6 17256715 17256891 -172022663 + MIR SINE MIR 7 188 -74 1721 131 103 22 chr6 17257703 17258015 -172021539 + MER1B DNA MER1_type 1 337 0 2270 112 0 0 chr6 17258147 17258441 -172021113 - AluSc SINE Alu -15 294 1 191 373 44 32 chr6 17258451 17258609 -172020945 - MIR SINE MIR -74 188 29 1984 128 3 7 chr6 17258737 17259043 -172020511 + AluSx SINE Alu 3 307 0 217 0 0 57 chr6 17259519 17259554 -172020000 + (CCA)n Simple_repeat Simple_repeat 3 35 0 370 346 34 58 chr6 17261073 17261368 -172018186 - L2 LINE L2 0 3272 2985 702 154 0 0 chr6 17261373 17261483 -172018071 + AluJb SINE Alu 2 111 -201 343 244 0 12 chr6 17261483 17261569 -172017985 + MER61E LTR ERV1 1 85 -484 242 254 0 17 chr6 17261652 17261711 -172017843 + LTR19B LTR ERV1 227 284 -296 * 2446 177 22 44 chr6 17261690 17262147 -172017407 + MER61E LTR ERV1 85 531 -38 1243 133 6 0 chr6 17262170 17262351 -172017203 + AluJb SINE Alu 107 288 -24 215 337 11 0 chr6 17262501 17262593 -172016961 - L2 LINE L2 -491 2823 2731 336 276 171 7 chr6 17263407 17263470 -172016084 + MER5B DNA MER1_type 2 53 -125 593 193 0 0 chr6 17263470 17263589 -172015965 + L1PA16 LINE L1 6043 6161 -5 2278 135 38 19 chr6 17263592 17263963 -172015591 + MER83B LTR ERV1 1 378 0 336 276 171 7 chr6 17263963 17264047 -172015507 + MER5B DNA MER1_type 54 178 0 304 276 144 83 chr6 17264783 17265096 -172014458 + MER77 LTR ERV1 156 529 -76 1874 163 0 0 chr6 17265600 17265888 -172013666 + AluJo SINE Alu 4 291 -21 598 154 22 39 chr6 17265897 17266079 -172013475 + GA-rich Low_complexity Low_complexity 1 179 0 491 308 66 0 chr6 17267545 17267772 -172011782 - MIR SINE MIR -3 259 18 3726 94 0 23 chr6 17267925 17268110 -172011444 + MER9 LTR ERVK 1 189 -322 2637 58 0 0 chr6 17268110 17268421 -172011133 - AluY SINE Alu 0 311 1 3726 94 0 23 chr6 17268421 17268758 -172010796 + MER9 LTR ERVK 189 511 0 188 214 0 0 chr6 17269876 17269918 -172009636 + L2 LINE L2 3272 3313 0 399 289 146 16 chr6 17270242 17270488 -172009066 - L3 LINE CR1 -721 856 579 839 261 73 46 chr6 17270525 17270799 -172008755 - MLT1J LTR MaLR -1 510 226 4900 119 11 7 chr6 17270799 17271523 -172008031 - LTR8A LTR ERV1 0 727 1 839 261 73 46 chr6 17271523 17271551 -172008003 - MLT1J LTR MaLR -285 226 200 2142 98 0 0 chr6 17271565 17271830 -172007724 - AluSg SINE Alu -45 265 1 4344 184 40 15 chr6 17272110 17272986 -172006568 + MER4D LTR ERV1 1 898 -5 232 312 97 0 chr6 17273151 17273244 -172006310 - MLT2F LTR ERVL 0 663 562 644 248 145 14 chr6 17273364 17273646 -172005908 - MLT2F LTR ERVL -319 344 26 3335 119 0 45 chr6 17274220 17274468 -172005086 + MER41B LTR ERV1 122 335 -300 737 189 0 8 chr6 17274468 17274600 -172004954 + FLAM_C SINE Alu 2 132 -1 3335 119 0 45 chr6 17274600 17274887 -172004667 + MER41B LTR ERV1 335 633 -2 477 279 34 0 chr6 17275330 17275477 -172004077 + MIR SINE MIR 110 261 -1 1874 160 7 0 chr6 17275606 17275893 -172003661 + AluJb SINE Alu 1 289 -23 1957 163 0 0 chr6 17275894 17276209 -172003345 + AluSx SINE Alu 1 315 0 1788 102 0 12 chr6 17276992 17277238 -172002316 - AluSg SINE Alu -8 302 60 1820 175 5 67 chr6 17277323 17277695 -172001859 - MER50 LTR ERV1 -23 711 363 4575 117 15 24 chr6 17277888 17278605 -172000949 + MER50 LTR ERV1 1 711 -23 1732 206 161 33 chr6 17279050 17279510 -172000044 - LTR40a LTR ERVL 0 519 1 378 290 146 38 chr6 17279625 17279783 -171999771 + MIR SINE MIR 16 188 -62 288 146 0 15 chr6 17279865 17280111 -171999443 + AluJb SINE Alu 1 300 0 938 185 28 0 chr6 17280923 17281101 -171998453 - MER5A DNA MER1_type -3 186 4 768 218 23 11 chr6 17281112 17281286 -171998268 - MER5B DNA MER1_type 0 178 3 536 224 10 83 chr6 17281842 17281911 -171997643 + MER5B DNA MER1_type 1 73 -105 548 213 19 0 chr6 17281911 17282019 -171997535 - MER81 DNA DNA -1 113 4 536 224 10 83 chr6 17282019 17282141 -171997413 + MER5B DNA MER1_type 73 178 0 1792 156 184 11 chr6 17283251 17283616 -171995938 - MSTA LTR MaLR 0 428 1 1054 240 12 4 chr6 17283823 17284077 -171995477 + MIR SINE MIR 6 261 -1 2277 147 34 54 chr6 17284241 17284682 -171994872 - MSTB1 LTR MaLR 0 432 1 227 208 0 0 chr6 17284771 17284824 -171994730 + MIR SINE MIR 197 249 -13 21 0 0 0 chr6 17284852 17284873 -171994681 + AT_rich Low_complexity Low_complexity 1 21 0 220 308 48 0 chr6 17286036 17286140 -171993414 - MIR SINE MIR -15 247 139 2163 138 0 6 chr6 17286346 17286657 -171992897 + AluSx SINE Alu 4 312 0 833 219 15 5 chr6 17286944 17287140 -171992414 + LTR16B LTR ERVL 261 458 -6 452 269 48 36 chr6 17287384 17287581 -171991973 - MER20B DNA MER1_type -17 202 1 365 317 89 86 chr6 17287600 17288187 -171991367 + L2 LINE L2 1071 1655 -1659 1686 176 3 30 chr6 17288187 17288489 -171991065 + AluJb SINE Alu 3 296 -16 365 317 89 86 chr6 17288489 17289167 -171990387 + L2 LINE L2 1655 2340 -974 231 322 40 53 chr6 17289483 17289635 -171989919 - LTR67 LTR ERVL -309 248 99 459 324 7 0 chr6 17289909 17290057 -171989497 + L2 LINE L2 2584 2732 -582 219 286 12 12 chr6 17290087 17290171 -171989383 + L2 LINE L2 3156 3239 -33 254 93 0 23 chr6 17290380 17290423 -171989131 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 1645 169 34 0 chr6 17290424 17290690 -171988864 - AluJb SINE Alu -37 275 1 1555 142 130 128 chr6 17292030 17292367 -171987187 + MSTB LTR MaLR 3 338 -88 4760 58 5 5 chr6 17292367 17292965 -171986589 - L1PA8 LINE L1 -5 6167 5570 1555 142 130 128 chr6 17292965 17293008 -171986546 + MSTB LTR MaLR 338 379 -47 2074 128 7 3 chr6 17293008 17293305 -171986249 - AluSx SINE Alu -14 298 1 1555 142 130 128 chr6 17293305 17293346 -171986208 + MSTB LTR MaLR 379 426 0 426 228 193 1 chr6 17293495 17293733 -171985821 + L2 LINE L2 2779 3059 -254 2343 160 80 34 chr6 17293734 17294209 -171985345 + MLT1D LTR MaLR 3 499 -6 622 219 52 89 chr6 17294210 17294307 -171985247 + L2 LINE L2 3054 3153 -160 2587 67 0 0 chr6 17294307 17294606 -171984948 - AluSc SINE Alu -10 299 1 622 219 52 89 chr6 17294606 17294778 -171984776 + L2 LINE L2 3153 3313 0 666 280 8 42 chr6 17295179 17295418 -171984136 - MIR SINE MIR 0 262 32 1685 129 101 21 chr6 17295460 17295746 -171983808 - THE1B LTR MaLR -55 309 1 2197 66 216 3 chr6 17295753 17296073 -171983481 - THE1B-int LTR MaLR -21 1559 1172 1867 174 30 22 chr6 17296253 17296615 -171982939 - MLT1A1 LTR MaLR 0 365 1 682 244 160 91 chr6 17296924 17297232 -171982322 - MLT1D LTR MaLR 0 467 115 1812 197 21 13 chr6 17297232 17297617 -171981937 + MLT1B LTR MaLR 1 388 -2 682 244 160 91 chr6 17297617 17297737 -171981817 - MLT1D LTR MaLR -352 115 5 6365 103 9 24 chr6 17298930 17299861 -171979693 + MER11C LTR ERVK 141 1057 -14 1206 209 15 67 chr6 17299878 17299932 -171979622 + MLT1G LTR MaLR 278 333 -257 2337 179 38 20 chr6 17299932 17300384 -171979170 + MLT1C LTR MaLR 4 463 -4 1206 209 15 67 chr6 17300384 17300659 -171978895 + MLT1G LTR MaLR 333 590 0 358 288 119 29 chr6 17300813 17301091 -171978463 - L1ME4a LINE L1 -73 6048 5746 1282 225 62 3 chr6 17301151 17301471 -171978083 + MER58B DNA MER1_type 2 340 -1 752 161 12 50 chr6 17301482 17301643 -171977911 + MLT2C1 LTR ERVL 243 397 0 1837 184 25 22 chr6 17302314 17302679 -171976875 - MLT1B LTR MaLR -4 386 21 1745 232 90 114 chr6 17303671 17304234 -171975320 + L2 LINE L2 1993 2568 -745 699 199 8 15 chr6 17304234 17304365 -171975189 - FAM SINE Alu -15 170 41 1745 232 90 114 chr6 17304365 17304983 -171974571 + L2 LINE L2 2568 3265 -48 450 223 41 16 chr6 17305031 17305152 -171974402 - MIR3 SINE MIR -54 154 31 3594 115 4 2 chr6 17305362 17305868 -171973686 - L1PA15 LINE L1 -6 6159 5653 4242 120 10 8 chr6 17306210 17306834 -171972720 + MER41B LTR ERV1 3 627 -8 781 211 99 30 chr6 17306842 17307074 -171972480 + MIR SINE MIR 5 252 -10 1903 175 195 24 chr6 17307076 17307584 -171971970 - LTR49 LTR ERV1 0 595 1 2378 93 3 0 chr6 17307638 17307938 -171971616 - AluSp SINE Alu -12 301 1 180 0 0 0 chr6 17308037 17308057 -171971497 + (TGG)n Simple_repeat Simple_repeat 1 20 0 691 305 35 0 chr6 17308057 17308257 -171971297 + MER102b DNA MER1_type 84 290 -51 230 330 68 15 chr6 17308452 17308716 -171970838 - L1M4 LINE L1 -1088 5058 4781 204 162 27 0 chr6 17310123 17310160 -171969394 + CT-rich Low_complexity Low_complexity 4 41 0 1827 209 32 38 chr6 17310410 17310435 -171969119 + MLT1C LTR MaLR 1 25 -442 2243 179 47 2 chr6 17310435 17310843 -171968711 - MSTB LTR MaLR 0 426 1 1827 209 32 38 chr6 17310843 17311004 -171968550 + MLT1C LTR MaLR 25 186 -281 2258 123 0 0 chr6 17311004 17311312 -171968242 + AluSx SINE Alu 1 308 -4 1827 209 32 38 chr6 17311312 17311594 -171967960 + MLT1C LTR MaLR 186 467 0 208 150 0 25 chr6 17312585 17312625 -171966929 + (GAAAA)n Simple_repeat Simple_repeat 3 41 0 228 358 43 12 chr6 17312805 17312967 -171966587 - L2 LINE L2 -4 3268 3102 234 345 81 39 chr6 17313297 17313555 -171965999 - L2 LINE L2 -410 2904 2636 463 314 124 19 chr6 17313556 17313814 -171965740 + L1MC/D LINE L1 5432 5716 -2092 1824 102 121 11 chr6 17313871 17314136 -171965418 + AluSx SINE Alu 1 294 -18 1895 151 9 38 chr6 17314350 17314669 -171964885 - AluSx SINE Alu -2 310 1 1874 164 0 10 chr6 17314723 17315022 -171964532 - AluJo SINE Alu -14 298 3 183 71 71 0 chr6 17315033 17315075 -171964479 + (TA)n Simple_repeat Simple_repeat 2 46 0 250 182 0 0 chr6 17315078 17315133 -171964421 - L1MC4 LINE L1 -1340 6702 6648 2389 80 3 0 chr6 17315152 17315441 -171964113 - AluSp SINE Alu -23 290 1 2038 148 0 0 chr6 17316779 17317069 -171962485 + AluJb SINE Alu 1 290 -22 1414 188 44 76 chr6 17317413 17317730 -171961824 - MLT1C LTR MaLR -5 452 164 4010 120 16 2 chr6 17317730 17318339 -171961215 + L1PA13 LINE L1 5546 6163 0 1414 188 44 76 chr6 17318339 17318463 -171961091 - MLT1C LTR MaLR -293 164 38 225 0 0 0 chr6 17319019 17319044 -171960510 + (CA)n Simple_repeat Simple_repeat 2 26 0 1975 157 3 0 chr6 17320321 17320626 -171958928 + AluJb SINE Alu 1 306 -6 600 162 19 0 chr6 17321003 17321108 -171958446 - LTR47A LTR ERVL -343 109 3 629 233 53 72 chr6 17321822 17322179 -171957375 - MLT1H LTR MaLR -16 533 109 2150 95 3 0 chr6 17322583 17322866 -171956688 + THE1B-int LTR MaLR 1297 1580 0 2148 144 36 30 chr6 17322866 17323228 -171956326 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr6 17323384 17323406 -171956148 + AT_rich Low_complexity Low_complexity 1 22 0 1861 143 60 33 chr6 17323435 17323800 -171955754 - THE1C LTR MaLR 0 375 1 183 42 0 0 chr6 17324599 17324623 -171954931 + (CA)n Simple_repeat Simple_repeat 1 24 0 202 277 40 50 chr6 17324853 17324954 -171954600 - MER5A DNA MER1_type -9 180 81 281 236 112 11 chr6 17324992 17325081 -171954473 + L2 LINE L2 2219 2316 -998 1526 127 9 18 chr6 17326209 17326438 -171953116 - AluSg/x SINE Alu 0 312 86 1676 174 34 7 chr6 17326786 17327084 -171952470 - AluJo SINE Alu -6 306 1 255 65 0 81 chr6 17328498 17328560 -171950994 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 294 306 28 0 chr6 17328664 17328772 -171950782 + MIR SINE MIR 30 140 -68 1622 165 0 84 chr6 17329252 17329398 -171950156 + AluJb SINE Alu 1 105 -207 2527 83 0 0 chr6 17329398 17329700 -171949854 + AluY SINE Alu 1 302 -9 1622 165 0 84 chr6 17329700 17329886 -171949668 + AluJb SINE Alu 105 305 -7 508 290 7 14 chr6 17330675 17330820 -171948734 - MER5B DNA MER1_type -12 166 23 366 322 84 7 chr6 17330876 17331019 -171948535 + MER5B DNA MER1_type 25 178 0 2193 110 0 0 chr6 17331769 17332068 -171947486 - AluSx SINE Alu 0 312 14 191 204 20 0 chr6 17332127 17332176 -171947378 + (CA)n Simple_repeat Simple_repeat 1 50 0 705 229 88 0 chr6 17333160 17333330 -171946224 + MIR SINE MIR 29 213 -49 332 349 48 66 chr6 17333398 17333492 -171946062 + L2 LINE L2 2456 2550 -764 2384 79 7 0 chr6 17333492 17333796 -171945758 - AluSp SINE Alu -7 306 1 332 349 48 66 chr6 17333796 17334097 -171945457 + L2 LINE L2 2550 2844 -470 212 256 0 0 chr6 17334181 17334224 -171945330 + polypyrimidine Low_complexity Low_complexity 5 47 0 356 289 40 40 chr6 17336591 17336816 -171942738 - MLT1J LTR MaLR 0 511 287 2212 85 97 22 chr6 17336821 17337140 -171942414 + MER61A LTR ERV1 1 343 0 2170 65 0 4 chr6 17337829 17338091 -171941463 - AluSc SINE Alu -14 295 35 570 238 139 0 chr6 17338422 17338573 -171940981 + MER45A DNA AcHobo 1 172 -6 593 346 11 23 chr6 17338584 17338847 -171940707 + MIR SINE MIR 2 261 -1 649 262 123 71 chr6 17338871 17339211 -171940343 - L2 LINE L2 -4 3309 2952 2232 107 0 0 chr6 17339452 17339743 -171939811 - AluSg SINE Alu -9 301 11 573 139 12 12 chr6 17340215 17340381 -171939173 + GA-rich Low_complexity Low_complexity 1 166 0 3355 173 65 37 chr6 17341776 17341951 -171937603 + L1MB3 LINE L1 5338 5507 -676 2523 75 0 0 chr6 17341951 17342258 -171937296 - AluY SINE Alu -4 307 1 3355 173 65 37 chr6 17342258 17342797 -171936757 + L1MB3 LINE L1 5507 6088 -95 2237 89 20 3 chr6 17342797 17343090 -171936464 - AluSx SINE Alu -14 298 1 3355 173 65 37 chr6 17343090 17343175 -171936379 + L1MB3 LINE L1 6088 6169 -14 393 22 0 0 chr6 17343175 17343221 -171936333 + (CA)n Simple_repeat Simple_repeat 1 46 0 1687 183 3 3 chr6 17343791 17344117 -171935437 - AluJb SINE Alu 0 326 1 3973 133 139 88 chr6 17345000 17346349 -171933205 - pTR5 LTR ERV1 -143 2295 743 924 289 89 58 chr6 17346368 17347045 -171932509 + L1MEd LINE L1 2 712 -5407 207 69 0 0 chr6 17347045 17347074 -171932480 + (CA)n Simple_repeat Simple_repeat 1 29 0 924 289 89 58 chr6 17347074 17347253 -171932301 + L1MEd LINE L1 712 884 -5235 44 0 0 0 chr6 17347335 17347379 -171932175 + AT_rich Low_complexity Low_complexity 1 44 0 364 256 88 82 chr6 17347379 17347574 -171931980 + L1MEd LINE L1 814 1006 -5137 2215 96 3 35 chr6 17347574 17347888 -171931666 + AluSx SINE Alu 7 310 -2 364 256 88 82 chr6 17347888 17348133 -171931421 + L1MEd LINE L1 1006 1281 -4862 224 217 67 0 chr6 17348176 17348236 -171931318 - MIR SINE MIR -1 261 198 227 81 0 54 chr6 17348496 17348533 -171931021 - MER57B LTR ERV1 -319 115 81 201 366 0 12 chr6 17348533 17348615 -171930939 - MER5B DNA MER1_type -30 148 68 459 184 61 0 chr6 17348769 17348867 -171930687 - MER5A DNA MER1_type -83 106 3 251 150 0 0 chr6 17348909 17348949 -171930605 - MER5B DNA MER1_type -2 176 137 1301 165 70 70 chr6 17348959 17349160 -171930394 - MLT1A1 LTR MaLR -13 352 149 2104 117 3 31 chr6 17349160 17349477 -171930077 - AluSx SINE Alu -4 308 1 1301 165 70 70 chr6 17349477 17349603 -171929951 - MLT1A1 LTR MaLR -215 150 25 232 330 19 29 chr6 17349610 17349632 -171929922 - MER5B DNA MER1_type -37 141 120 1232 184 42 42 chr6 17349632 17349871 -171929683 + MER8 DNA MER2_type 1 239 0 232 330 19 29 chr6 17349871 17349951 -171929603 - MER5B DNA MER1_type -58 120 40 21 57 0 0 chr6 17351254 17351289 -171928265 + AT_rich Low_complexity Low_complexity 1 35 0 444 37 0 0 chr6 17351385 17351439 -171928115 + (TG)n Simple_repeat Simple_repeat 2 55 0 439 186 0 0 chr6 17352443 17352513 -171927041 - MER8 DNA MER2_type 0 239 170 * 2665 136 36 23 chr6 17352502 17352942 -171926612 + Tigger2 DNA MER2_type 2273 2718 0 280 344 75 0 chr6 17353035 17353128 -171926426 + L2 LINE L2 3173 3272 0 2297 94 0 16 chr6 17353775 17354082 -171925472 + AluSq SINE Alu 1 302 -11 198 194 0 0 chr6 17354777 17354808 -171924746 - MIR SINE MIR -63 145 115 508 178 19 19 chr6 17354960 17355067 -171924487 + MER5A DNA MER1_type 7 113 -76 3892 136 5 8 chr6 17355639 17356241 -171923313 + L1PA16 LINE L1 5545 6144 -22 261 263 103 32 chr6 17357529 17357685 -171921869 + MIR SINE MIR 96 262 0 2079 170 80 3 chr6 17358023 17358388 -171921166 + MER47B DNA MER2_type 26 418 0 1538 219 19 27 chr6 17359352 17359718 -171919836 - MLT1A2 LTR MaLR -6 368 6 315 0 0 0 chr6 17360553 17360588 -171918966 + (CA)n Simple_repeat Simple_repeat 2 36 0 2113 202 33 54 chr6 17360612 17361128 -171918426 - MLT1D LTR MaLR 0 505 1 202 305 0 0 chr6 17361866 17361925 -171917629 - L2 LINE L2 -8 3264 3206 1874 120 8 2 chr6 17362175 17362452 -171917102 + THE1B LTR MaLR 1 293 -62 1689 185 6 22 chr6 17363247 17363561 -171915993 + AluJo SINE Alu 1 309 -3 184 320 10 30 chr6 17363811 17363911 -171915643 + MIR SINE MIR 61 158 -104 281 358 37 22 chr6 17364163 17364297 -171915257 + L2 LINE L2 3132 3267 -5 675 239 40 105 chr6 17364829 17365105 -171914449 - MIR SINE MIR -4 258 1 2199 140 83 34 chr6 17365472 17365541 -171914013 - MSTA LTR MaLR 0 428 364 2088 90 76 0 chr6 17365541 17365818 -171913736 + AluSp SINE Alu 1 298 -15 2199 140 83 34 chr6 17365818 17366156 -171913398 - MSTA LTR MaLR -64 364 1 387 0 0 0 chr6 17366798 17366841 -171912713 + (TG)n Simple_repeat Simple_repeat 2 44 0 814 144 0 0 chr6 17368237 17368348 -171911206 + FLAM_C SINE Alu 1 111 -32 207 0 0 0 chr6 17368360 17368383 -171911171 + (TTG)n Simple_repeat Simple_repeat 2 24 0 279 296 83 46 chr6 17368654 17368762 -171910792 + L2 LINE L2 3161 3272 0 369 241 65 9 chr6 17369139 17369247 -171910307 + MIR SINE MIR 65 178 -84 2447 90 0 0 chr6 17369916 17370217 -171909337 + AluSx SINE Alu 1 301 -11 2217 101 7 33 chr6 17370285 17370592 -171908962 - AluSq SINE Alu -14 299 1 1848 151 20 7 chr6 17370913 17371217 -171908337 + MER46B DNA MER2_type 2 184 -52 21 0 0 0 chr6 17372310 17372331 -171907223 + AT_rich Low_complexity Low_complexity 1 21 0 2186 119 3 0 chr6 17372496 17372790 -171906764 + AluSx SINE Alu 6 300 -12 202 204 0 0 chr6 17373352 17373396 -171906158 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 445 338 122 31 chr6 17373527 17374047 -171905507 - L2 LINE L2 -180 3092 2513 588 240 0 8 chr6 17374324 17374445 -171905109 - MER5C DNA MER1_type -200 124 5 1205 217 103 37 chr6 17374478 17374828 -171904726 - MLT1J2 LTR MaLR -40 410 38 1822 161 0 16 chr6 17375828 17376324 -171903230 + AluJb SINE Alu 1 312 0 1172 106 6 0 chr6 17376339 17376518 -171903036 + (GAA)n Simple_repeat Simple_repeat 1 180 0 355 238 195 43 chr6 17376543 17376728 -171902826 + MIR SINE MIR 50 262 0 1864 201 44 29 chr6 17376901 17377237 -171902317 - MLT1C LTR MaLR -8 459 113 2874 109 0 3 chr6 17377237 17377613 -171901941 + THE1C LTR MaLR 1 375 0 1864 201 44 29 chr6 17377613 17377728 -171901826 - MLT1C LTR MaLR -354 113 1 2178 98 0 0 chr6 17379716 17380012 -171899542 + AluSx SINE Alu 7 302 0 1506 114 50 5 chr6 17381993 17382213 -171897341 - MER30 DNA MER1_type 0 230 1 357 99 37 0 chr6 17382222 17382303 -171897251 + (TA)n Simple_repeat Simple_repeat 1 84 0 298 301 83 26 chr6 17382372 17382528 -171897026 + MIR3 SINE MIR 33 197 -11 2250 97 3 31 chr6 17383209 17383530 -171896024 - AluSp SINE Alu -1 312 1 273 57 0 0 chr6 17383742 17383777 -171895777 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 230 243 57 14 chr6 17384031 17384101 -171895453 - L2 LINE L2 -13 3300 3228 22 35 0 0 chr6 17385391 17385420 -171894134 + AT_rich Low_complexity Low_complexity 1 29 0 3445 167 22 2 chr6 17385745 17386296 -171893258 + MER68 LTR ERV1 1 562 0 1206 252 151 43 chr6 17386299 17387128 -171892426 - L2 LINE L2 -18 3295 2341 1764 157 3 26 chr6 17387128 17387433 -171892121 - AluJo SINE Alu -13 299 2 1206 252 151 43 chr6 17387433 17387444 -171892110 - L2 LINE L2 -972 2341 2333 566 278 102 5 chr6 17387447 17387634 -171891920 - MIR SINE MIR -56 206 2 2233 91 0 3 chr6 17387761 17388083 -171891471 - AluSp SINE Alu 0 321 1 234 62 0 0 chr6 17388117 17388149 -171891405 + (TGGA)n Simple_repeat Simple_repeat 4 35 0 1773 263 24 0 chr6 17388204 17388622 -171890932 + LTR16A LTR ERVL 21 448 -2 237 33 0 0 chr6 17388638 17388668 -171890886 + (CA)n Simple_repeat Simple_repeat 1 30 0 607 158 21 0 chr6 17388668 17388763 -171890791 + L1MC4 LINE L1 6705 6801 -1241 816 214 0 12 chr6 17388763 17388931 -171890623 + AluJb SINE Alu 132 297 -15 6016 157 37 63 chr6 17388936 17390228 -171889326 + L1MC4 LINE L1 6793 7994 -1 2689 127 46 7 chr6 17390244 17390678 -171888876 - L1MB2 LINE L1 -2 6169 5719 2354 183 72 17 chr6 17391333 17391862 -171887692 + L1MD3 LINE L1 7435 7992 -3 180 149 64 85 chr6 17391927 17391974 -171887580 - L2 LINE L2 0 3272 3227 2296 116 0 0 chr6 17392513 17392814 -171886740 + AluSx SINE Alu 1 301 -11 2056 92 0 11 chr6 17393541 17393813 -171885741 - AluSx SINE Alu -43 269 1 324 256 244 12 chr6 17393873 17394041 -171885513 - MIR SINE MIR 0 262 56 22 56 0 0 chr6 17394142 17394178 -171885376 + AT_rich Low_complexity Low_complexity 1 36 0 823 249 37 12 chr6 17394426 17394667 -171884887 + L1M4 LINE L1 3535 3781 -2365 3312 119 4 13 chr6 17394867 17395339 -171884215 - MER1A DNA MER1_type 0 529 62 186 278 189 0 chr6 17395552 17395642 -171883912 - MIR SINE MIR -111 151 45 2480 55 0 7 chr6 17396141 17396450 -171883104 + AluY SINE Alu 1 307 -4 2335 103 0 3 chr6 17396833 17397134 -171882420 - AluSg SINE Alu -10 300 1 226 260 83 21 chr6 17397172 17397268 -171882286 - L1ME4a LINE L1 -97 6024 5923 291 211 100 11 chr6 17400589 17400679 -171878875 + L1ME4a LINE L1 6018 6115 -6 209 152 43 0 chr6 17401759 17401805 -171877749 + GA-rich Low_complexity Low_complexity 2 49 0 189 0 0 0 chr6 17401849 17401870 -171877684 + (T)n Simple_repeat Simple_repeat 1 21 0 1834 146 3 26 chr6 17402072 17402380 -171877174 + AluJo SINE Alu 4 304 -8 2093 110 3 3 chr6 17402434 17402740 -171876814 + AluSp SINE Alu 1 306 0 1696 188 0 7 chr6 17402759 17403067 -171876487 - AluJb SINE Alu -6 306 1 184 310 0 0 chr6 17403950 17404008 -171875546 - MIR SINE MIR -108 154 97 1957 124 3 22 chr6 17404031 17404346 -171875208 - AluJo SINE Alu -3 309 1 2318 75 6 40 chr6 17404873 17405236 -171874318 - AluSq SINE Alu 0 354 3 186 43 0 0 chr6 17407628 17407651 -171871903 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr6 17408580 17408601 -171870953 + AT_rich Low_complexity Low_complexity 1 21 0 216 203 51 68 chr6 17409718 17409777 -171869777 + MIR SINE MIR 22 79 -129 294 269 107 34 chr6 17410687 17410836 -171868718 + L2 LINE L2 3118 3277 -36 228 130 0 0 chr6 17412335 17412381 -171867173 + LTR66 LTR ERVL 394 439 -171 235 124 29 76 chr6 17412383 17412488 -171867066 + (TA)n Simple_repeat Simple_repeat 1 100 0 2765 219 92 34 chr6 17412685 17413788 -171865766 - L1ME2 LINE L1 -31 6133 4978 1894 80 53 0 chr6 17415739 17416001 -171863553 + AluY SINE Alu 21 296 -15 208 362 73 24 chr6 17417199 17417445 -171862109 - L2 LINE L2 -337 2977 2720 235 324 34 34 chr6 17417657 17417833 -171861721 - L2 LINE L2 -925 2389 2214 850 217 69 23 chr6 17419026 17419243 -171860311 - MLT1E LTR MaLR -4 589 363 301 230 120 40 chr6 17420720 17420820 -171858734 - MIR SINE MIR -36 226 119 258 259 0 62 chr6 17422171 17422252 -171857302 - MIR SINE MIR -117 91 16 24 0 0 0 chr6 17424946 17424970 -171854584 + AT_rich Low_complexity Low_complexity 1 24 0 576 81 0 0 chr6 17424970 17425044 -171854510 - U3 snRNA snRNA -143 74 1 21 0 0 0 chr6 17425517 17425538 -171854016 + AT_rich Low_complexity Low_complexity 1 21 0 212 233 192 0 chr6 17425610 17425683 -171853871 - L2 LINE L2 0 3313 3227 464 158 13 26 chr6 17427154 17427230 -171852324 + FLAM_A SINE Alu 9 83 -59 2309 87 0 26 chr6 17427674 17427985 -171851569 + AluY SINE Alu 9 311 0 310 349 92 64 chr6 17428896 17428962 -171850592 - L2 LINE L2 0 3272 3209 974 181 31 62 chr6 17428962 17429188 -171850366 + MER20 DNA MER1_type 1 219 0 310 349 92 64 chr6 17429188 17429557 -171849997 - L2 LINE L2 -63 3209 2825 482 193 156 46 chr6 17430748 17430857 -171848697 - FLAM_A SINE Alu -12 130 10 667 254 12 0 chr6 17430961 17431130 -171848424 - MIR SINE MIR -45 217 47 1146 229 185 92 chr6 17432232 17432950 -171846604 - LTR1B LTR ERV1 -37 983 1 628 218 79 12 chr6 17433982 17434147 -171845407 + L2 LINE L2 3119 3294 -19 480 272 9 80 chr6 17435179 17435289 -171844265 + MIR SINE MIR 56 146 -116 1561 28 0 6 chr6 17435289 17435496 -171844058 + AluY SINE Alu 104 309 0 480 272 9 80 chr6 17435496 17435597 -171843957 + MIR SINE MIR 146 253 -9 540 251 0 116 chr6 17435706 17435913 -171843641 + MER91B DNA MER1_type 8 190 0 380 238 9 38 chr6 17436763 17436868 -171842686 + L1ME1 LINE L1 6048 6149 -17 864 188 64 43 chr6 17436880 17437114 -171842440 + MLT1L LTR MaLR 1 239 -376 2143 108 17 0 chr6 17437118 17437405 -171842149 + AluSq SINE Alu 1 292 -21 926 136 0 0 chr6 17439268 17439400 -171840154 + FLAM_C SINE Alu 2 133 0 782 245 71 74 chr6 17439531 17439854 -171839700 + MLT1L LTR MaLR 294 615 0 921 157 82 0 chr6 17441043 17441202 -171838352 - FRAM SINE Alu -7 169 1 222 37 0 0 chr6 17441508 17441535 -171838019 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 476 185 11 0 chr6 17441551 17441643 -171837911 - L2 LINE L2 -41 3272 3180 1392 146 0 61 chr6 17441929 17442176 -171837378 - MER21B LTR ERV1 0 863 632 232 254 0 0 chr6 17442179 17442238 -171837316 - MLT1E3 LTR MaLR -453 171 113 4733 150 37 37 chr6 17442265 17443127 -171836427 - MER21B LTR ERV1 -1 862 1 186 43 0 0 chr6 17444364 17444387 -171835167 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 2002 141 29 29 chr6 17445488 17445863 -171833691 + THE1C LTR MaLR 1 375 0 210 71 0 0 chr6 17445880 17445908 -171833646 + (T)n Simple_repeat Simple_repeat 1 28 0 1078 210 76 45 chr6 17446159 17446540 -171833014 - L1MC5 LINE L1 -26 7935 7543 1572 114 18 9 chr6 17446540 17446767 -171832787 - MER30 DNA MER1_type 0 230 2 571 286 11 11 chr6 17446791 17446976 -171832578 - L1M4 LINE L1 -1939 4207 4023 203 288 26 20 chr6 17446988 17447141 -171832413 + (TA)n Simple_repeat Simple_repeat 1 154 0 247 267 43 17 chr6 17447175 17447291 -171832263 - L1M4 LINE L1 -2208 3938 3820 1992 175 48 11 chr6 17447718 17448093 -171831461 + L1MC3 LINE L1 6119 7703 -82 541 183 29 0 chr6 17448759 17448863 -171830691 + L1MC3 LINE L1 7678 7784 -1 2155 126 3 0 chr6 17449019 17449313 -171830241 + AluSx SINE Alu 1 295 -17 976 195 45 112 chr6 17450431 17450877 -171828677 - L1MC5 LINE L1 -35 7926 7511 1557 149 15 98 chr6 17451763 17452098 -171827456 - AluSq SINE Alu -6 307 1 285 285 67 36 chr6 17452607 17452744 -171826810 + MIR SINE MIR 31 175 -87 2256 116 108 8 chr6 17452744 17453133 -171826421 + MSTA LTR MaLR 1 428 0 285 285 67 36 chr6 17453133 17453160 -171826394 + MIR SINE MIR 175 200 -62 4460 62 3 10 chr6 17453187 17453765 -171825789 + L1PA8 LINE L1 5599 6172 0 1658 119 51 10 chr6 17454130 17454423 -171825131 - L1MA7 LINE L1 0 6291 5987 380 203 85 25 chr6 17455020 17455138 -171824416 - MIR SINE MIR -118 144 20 277 180 0 0 chr6 17455589 17455639 -171823915 + L2 LINE L2 3258 3307 -6 1541 140 48 62 chr6 17455740 17455983 -171823571 - MER7A DNA MER2_type -2692 346 108 1618 184 7 7 chr6 17455983 17456271 -171823283 + AluJb SINE Alu 1 288 -24 1541 140 48 62 chr6 17456271 17456319 -171823235 - MER7A DNA MER2_type -2930 108 61 235 221 183 77 chr6 17456402 17456506 -171823048 + LTR31 LTR ERV1 109 223 -396 341 234 0 0 chr6 17456535 17456599 -171822955 + MER72 LTR ERV1 377 440 -282 3462 134 51 84 chr6 17456614 17457878 -171821676 - pTR5 LTR ERV1 -143 2295 741 413 269 155 5 chr6 17457878 17458071 -171821483 + LTR31 LTR ERV1 337 558 -61 1747 158 15 130 chr6 17458081 17458542 -171821012 - LTR12 LTR ERV1 -254 460 53 242 269 0 0 chr6 17458542 17458594 -171820960 - LTR30 LTR ERV1 -670 52 1 229 344 0 0 chr6 17458647 17458711 -171820843 - MER7A DNA MER2_type -284 64 1 252 0 0 0 chr6 17459120 17459148 -171820406 + (A)n Simple_repeat Simple_repeat 1 28 0 2111 102 0 10 chr6 17459330 17459624 -171819930 - AluSx SINE Alu -1 311 21 2113 98 7 0 chr6 17463077 17463363 -171816191 + AluSc SINE Alu 1 288 -21 237 108 0 0 chr6 17463415 17463452 -171816102 + (AATTG)n Simple_repeat Simple_repeat 4 40 0 245 227 15 15 chr6 17465283 17465349 -171814205 + (CATA)n Simple_repeat Simple_repeat 2 67 0 407 155 0 77 chr6 17465349 17465543 -171814011 + (TA)n Simple_repeat Simple_repeat 1 179 0 213 154 31 46 chr6 17465549 17465614 -171813940 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 1614 167 10 48 chr6 17466003 17466315 -171813239 + AluJb SINE Alu 1 300 -12 268 275 19 113 chr6 17467557 17467717 -171811837 - MIR SINE MIR -10 252 108 234 0 0 0 chr6 17468019 17468045 -171811509 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1677 31 0 0 chr6 17468045 17468239 -171811315 - L1PA4 LINE L1 -10 6145 5952 180 333 26 13 chr6 17468411 17468489 -171811065 + MER5A DNA MER1_type 63 141 -48 2015 154 0 10 chr6 17468650 17468961 -171810593 - AluSx SINE Alu -4 308 1 723 218 0 0 chr6 17468999 17469132 -171810422 - FLAM_A SINE Alu 0 133 1 1132 75 0 0 chr6 17469166 17469300 -171810254 + AluY SINE Alu 1 134 -177 2419 86 0 3 chr6 17469300 17469604 -171809950 + AluY SINE Alu 1 303 -8 777 183 84 120 chr6 17469606 17469973 -171809581 - L1MC4 LINE L1 -1 8041 7688 590 229 65 6 chr6 17470833 17471003 -171808551 - MIR SINE MIR -1 261 82 3413 183 60 93 chr6 17471090 17471933 -171807621 + L1MC5 LINE L1 6696 7565 -396 751 163 0 52 chr6 17471933 17472068 -171807486 + FLAM_C SINE Alu 5 132 -1 3413 183 60 93 chr6 17472068 17472345 -171807209 + L1MC5 LINE L1 7565 7772 -189 646 233 0 8 chr6 17472345 17472478 -171807076 + FLAM_A SINE Alu 1 132 -1 3413 183 60 93 chr6 17472478 17472629 -171806925 + L1MC5 LINE L1 7772 7926 -35 1717 177 99 46 chr6 17472804 17472835 -171806719 + L1M1 LINE L1 18 46 -7519 2150 96 32 0 chr6 17472835 17473117 -171806437 + AluSp SINE Alu 1 291 -22 1717 177 99 46 chr6 17473117 17473497 -171806057 + L1M1 LINE L1 46 451 -7114 6125 149 106 66 chr6 17473501 17475257 -171804297 - pTR5 LTR ERV1 0 2438 738 1428 186 0 0 chr6 17475257 17475493 -171804061 - AluJb SINE Alu -76 236 1 2406 85 3 3 chr6 17477863 17478169 -171801385 - AluSg SINE Alu -4 306 1 524 173 10 139 chr6 17478647 17478759 -171800795 + L1MB8 LINE L1 4136 4210 -1936 666 138 81 32 chr6 17478759 17478882 -171800672 + FLAM_C SINE Alu 1 129 -4 524 173 10 139 chr6 17478882 17478977 -171800577 + L1MB8 LINE L1 4210 4316 -1830 2151 96 0 3 chr6 17478985 17479267 -171800287 + AluSx SINE Alu 15 295 -17 3312 202 52 13 chr6 17479267 17480251 -171799303 + L1MB8 LINE L1 4535 5555 -629 2374 126 8 3 chr6 17480264 17480620 -171798934 + L1PA16 LINE L1 5792 6149 -17 3267 170 1 55 chr6 17480639 17481297 -171798257 + L1MB8 LINE L1 5550 6172 -6 1164 90 13 0 chr6 17481434 17481589 -171797965 + AluJb SINE Alu 156 312 0 569 136 0 11 chr6 17481612 17481700 -171797854 + U6 snRNA snRNA 1 87 -20 250 304 22 11 chr6 17481719 17481811 -171797743 - MIR SINE MIR -99 109 17 1374 211 4 15 chr6 17482585 17482850 -171796704 - AluJb SINE Alu -50 262 1 484 240 65 19 chr6 17483792 17483946 -171795608 + MIR3 SINE MIR 30 190 -18 2303 82 3 0 chr6 17483956 17484259 -171795295 + AluSx SINE Alu 1 304 0 1616 117 91 25 chr6 17484397 17484671 -171794883 + AluSx SINE Alu 1 292 -20 1646 161 29 18 chr6 17485520 17485799 -171793755 + AluJo SINE Alu 1 282 -30 1144 163 5 0 chr6 17485809 17485993 -171793561 + AluJo SINE Alu 119 303 -9 27 49 0 0 chr6 17486848 17486889 -171792665 + AT_rich Low_complexity Low_complexity 1 41 0 1222 96 18 0 chr6 17486945 17487112 -171792442 - Charlie3 DNA MER1_type -5 2705 2536 207 0 0 0 chr6 17537580 17537603 -171741951 + (A)n Simple_repeat Simple_repeat 1 23 0 2005 150 7 0 chr6 17537615 17537909 -171741645 - AluSx SINE Alu -16 296 1 491 247 161 0 chr6 17538016 17538190 -171741364 + MIR SINE MIR 57 258 -4 1682 108 0 62 chr6 17538310 17538570 -171740984 + AluSg1 SINE Alu 59 302 -7 281 212 40 81 chr6 17538709 17538808 -171740746 + MER21B LTR ERV1 12 106 -757 * 346 227 0 0 chr6 17538806 17538872 -171740682 + MER21B LTR ERV1 19 84 -779 328 203 16 0 chr6 17538879 17538943 -171740611 + MER21B LTR ERV1 42 106 -757 * 1122 252 59 35 chr6 17538941 17539390 -171740164 + MER21B LTR ERV1 19 492 -371 1874 203 37 6 chr6 17539604 17539958 -171739596 - MLT1A1 LTR MaLR 0 365 1 276 250 59 0 chr6 17539984 17540052 -171739502 + MIR SINE MIR 81 152 -56 2815 72 94 17 chr6 17541030 17541446 -171738108 - LTR7 LTR ERV1 -2 448 1 2175 108 53 16 chr6 17541446 17541824 -171737730 - HERVH LTR ERV1 0 7713 7322 1371 120 18 5 chr6 17541822 17542039 -171737515 - HERVH LTR ERV1 -1894 5819 5600 * 4257 143 0 1 chr6 17542040 17542703 -171736851 - HERVH LTR ERV1 -2564 5149 4488 3381 97 4 6 chr6 17542705 17543208 -171736346 - HERVH LTR ERV1 -3720 3993 3492 817 169 20 0 chr6 17543198 17543346 -171736208 - HERVH LTR ERV1 -4423 3290 3140 * 6122 86 0 12 chr6 17543330 17544221 -171735333 - HERVH LTR ERV1 -4720 2993 2114 14650 84 16 36 chr6 17544227 17547103 -171732451 - HERVH LTR ERV1 -5004 2709 1 2892 65 95 7 chr6 17547105 17547517 -171732037 - LTR7 LTR ERV1 -2 448 1 650 256 0 0 chr6 17547754 17547875 -171731679 - FLAM_C SINE Alu -21 122 2 213 337 74 0 chr6 17547921 17548016 -171731538 - MIR SINE MIR -62 146 45 2837 143 32 88 chr6 17548084 17549119 -171730435 + LTR12 LTR ERV1 1 1093 379 1970 86 76 31 chr6 17549119 17549409 -171730145 + AluY SINE Alu 1 303 -8 2837 143 32 88 chr6 17549409 17549680 -171729874 + LTR12 LTR ERV1 1093 379 -335 2259 70 7 30 chr6 17549680 17549978 -171729576 + AluY SINE Alu 1 291 -20 2837 143 32 88 chr6 17549978 17550298 -171729256 + LTR12 LTR ERV1 378 714 0 1679 120 139 4 chr6 17550916 17551175 -171728379 - AluSx SINE Alu -15 297 4 245 185 0 56 chr6 17551197 17551251 -171728303 + MER58 DNA MER1_type 2 52 -172 899 146 13 13 chr6 17551327 17551485 -171728069 + L1MB3 LINE L1 6009 6166 -17 30 27 0 0 chr6 17551485 17551522 -171728032 + AT_rich Low_complexity Low_complexity 1 37 0 247 213 0 0 chr6 17551522 17551583 -171727971 - L1MB4 LINE L1 -28 6152 6092 32 26 0 0 chr6 17551584 17551623 -171727931 + AT_rich Low_complexity Low_complexity 1 39 0 348 316 88 10 chr6 17551743 17551936 -171727618 - MIR SINE MIR -7 255 48 1477 161 61 72 chr6 17552047 17552112 -171727442 - MLT1A1 LTR MaLR -8 357 293 2087 152 0 3 chr6 17552112 17552421 -171727133 + AluJb SINE Alu 1 308 -4 1477 161 61 72 chr6 17552421 17552716 -171726838 - MLT1A1 LTR MaLR -72 293 1 819 147 0 16 chr6 17553503 17553632 -171725922 + FLAM_C SINE Alu 1 127 -16 2117 148 0 3 chr6 17553802 17554107 -171725447 + AluJb SINE Alu 1 304 -8 750 272 204 27 chr6 17554296 17554527 -171725027 - L1ME4a LINE L1 -6 6115 5926 2263 107 16 3 chr6 17554527 17554835 -171724719 + AluSx SINE Alu 1 312 0 750 272 204 27 chr6 17554835 17555332 -171724222 - L1ME4a LINE L1 -195 5926 5258 793 170 7 22 chr6 17555426 17555561 -171723993 - FLAM_C SINE Alu 0 133 1 2378 99 0 3 chr6 17556410 17556712 -171722842 - AluSc SINE Alu -8 301 1 1796 176 0 39 chr6 17558374 17558686 -171720868 + AluJb SINE Alu 1 300 -12 2251 99 7 3 chr6 17558776 17559069 -171720485 - AluSx SINE Alu -18 294 1 220 307 40 13 chr6 17560164 17560239 -171719315 - L2 LINE L2 -3 3310 3234 333 316 58 6 chr6 17560340 17560511 -171719043 - L2 LINE L2 -232 3040 2861 202 306 82 37 chr6 17560824 17560958 -171718596 - MIR SINE MIR -35 227 88 1053 228 17 31 chr6 17561763 17562159 -171717395 - MLT1C LTR MaLR -6 384 1 203 250 0 0 chr6 17562977 17563017 -171716537 - L2 LINE L2 0 3313 3274 223 270 0 100 chr6 17563230 17563330 -171716224 + MER5A DNA MER1_type 1 90 -99 889 149 48 43 chr6 17563696 17563884 -171715670 + MER5A DNA MER1_type 1 189 0 2340 80 13 25 chr6 17564092 17564406 -171715148 - AluSg SINE Alu 0 310 1 319 246 32 87 chr6 17564967 17565093 -171714461 - L1ME4a LINE L1 -1 6120 6002 287 211 40 13 chr6 17565093 17565169 -171714385 + MIR SINE MIR 51 128 -134 2322 119 0 0 chr6 17565402 17565704 -171713850 - AluSx SINE Alu -7 305 4 2429 87 10 0 chr6 17567336 17567645 -171711909 + AluSq SINE Alu 1 312 -1 180 111 0 0 chr6 17568455 17568482 -171711072 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 2036 128 33 10 chr6 17569227 17569532 -171710022 + AluSx SINE Alu 1 312 0 319 271 112 47 chr6 17569649 17569819 -171709735 - MIR3 SINE MIR -9 199 19 4172 163 35 31 chr6 17570689 17571906 -171707648 + pTR5 LTR ERV1 761 2296 -142 197 377 66 9 chr6 17572345 17572451 -171707103 + L3 LINE CR1 1447 1558 -19 945 67 0 0 chr6 17572457 17572576 -171706978 - AluSx SINE Alu 0 309 191 1089 121 0 0 chr6 17572577 17572717 -171706837 - AluSx SINE Alu -171 141 2 2222 135 0 0 chr6 17573811 17574123 -171705431 - AluSx SINE Alu 0 312 1 1868 171 7 0 chr6 17574228 17574526 -171705028 + AluJo SINE Alu 1 300 -12 207 0 0 0 chr6 17575616 17575639 -171703915 + (TC)n Simple_repeat Simple_repeat 2 24 0 231 345 99 9 chr6 17575743 17575878 -171703676 - MIR SINE MIR -61 147 49 1935 107 0 0 chr6 17576162 17576405 -171703149 + AluSq SINE Alu 48 290 -23 200 152 43 0 chr6 17578054 17578100 -171701454 + CT-rich Low_complexity Low_complexity 3 50 0 2216 119 13 10 chr6 17579265 17579576 -171699978 - AluJb SINE Alu 0 312 1 2156 120 13 0 chr6 17579791 17580090 -171699464 - AluSx SINE Alu -9 303 1 1921 166 10 0 chr6 17580989 17581285 -171698269 - AluJo SINE Alu -13 299 1 26 50 0 0 chr6 17583162 17583202 -171696352 + AT_rich Low_complexity Low_complexity 1 40 0 269 243 114 0 chr6 17589926 17589996 -171689558 + L2 LINE L2 3153 3230 -42 2153 112 0 23 chr6 17589997 17590302 -171689252 + AluSx SINE Alu 1 298 -14 244 201 9 50 chr6 17590319 17590425 -171689129 + L1MEd LINE L1 11 163 -5956 2042 131 3 20 chr6 17590481 17590786 -171688768 + AluSq SINE Alu 1 300 -13 1181 92 0 7 chr6 17590786 17590932 -171688622 + AluSg/x SINE Alu 135 279 -33 351 0 0 0 chr6 17590932 17590971 -171688583 + (CA)n Simple_repeat Simple_repeat 1 39 0 2012 134 7 10 chr6 17591546 17591867 -171687687 + AluJo SINE Alu 1 320 0 483 273 35 51 chr6 17591900 17592304 -171687250 + L1MEd LINE L1 920 1210 -4909 1639 111 0 0 chr6 17592352 17592560 -171686994 + AluSq SINE Alu 1 208 -105 1575 100 0 27 chr6 17592610 17592830 -171686724 - AluSc SINE Alu -85 224 11 430 325 61 35 chr6 17593161 17593392 -171686162 - MIR SINE MIR -6 256 20 206 246 49 0 chr6 17593639 17593700 -171685854 + (CATATA)n Simple_repeat Simple_repeat 5 68 0 261 86 0 0 chr6 17594381 17594416 -171685138 + Alu SINE Alu 18 52 -250 1073 55 31 0 chr6 17594624 17594752 -171684802 + AluSq/x SINE Alu 1 132 -180 757 223 34 107 chr6 17594758 17594943 -171684611 + MER87 LTR ERV1 239 391 -150 2005 134 14 7 chr6 17594943 17595235 -171684319 - AluSx SINE Alu -18 294 1 757 223 34 107 chr6 17595235 17595376 -171684178 + MER87 LTR ERV1 391 541 0 253 151 0 57 chr6 17595392 17595445 -171684109 + Alu SINE Alu 235 284 -17 216 0 0 0 chr6 17595445 17595469 -171684085 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 2189 110 0 17 chr6 17595613 17595912 -171683642 - AluSx SINE Alu -14 298 5 2320 102 16 0 chr6 17596662 17596965 -171682589 - AluSx SINE Alu -4 308 1 206 244 0 0 chr6 17597024 17597065 -171682489 - L2 LINE L2 -9 3263 3223 885 276 118 34 chr6 17597164 17597707 -171681847 + L2 LINE L2 2295 3082 -231 1663 157 3 64 chr6 17597723 17598036 -171681518 - AluJo SINE Alu -18 294 1 1884 130 34 25 chr6 17598053 17598376 -171681178 + MER1B DNA MER1_type 1 326 -13 242 226 0 151 chr6 17598418 17598511 -171681043 + L2 LINE L2 3221 3299 -14 2289 115 0 6 chr6 17598519 17598831 -171680723 + AluSg SINE Alu 1 310 0 180 0 0 0 chr6 17598920 17598940 -171680614 + (T)n Simple_repeat Simple_repeat 1 20 0 2148 121 0 0 chr6 17599361 17599670 -171679884 - AluSx SINE Alu 0 311 3 1998 137 0 3 chr6 17600992 17601277 -171678277 + AluJo SINE Alu 11 294 -18 2564 161 77 4 chr6 17601295 17601799 -171677755 + L1MC2 LINE L1 5799 6339 -5 216 352 24 32 chr6 17603093 17603218 -171676336 - MIR3 SINE MIR -81 127 4 1972 150 0 10 chr6 17603987 17604300 -171675254 + AluJo SINE Alu 1 310 -2 235 234 0 0 chr6 17604330 17604377 -171675177 - MIR SINE MIR -68 140 94 2311 98 9 22 chr6 17605286 17605602 -171673952 + AluSx SINE Alu 1 312 0 1690 183 10 29 chr6 17606207 17606513 -171673041 + AluJo SINE Alu 1 300 -12 1841 166 43 116 chr6 17606928 17607166 -171672388 + MER74A LTR ERVL 1 255 -303 2329 101 0 0 chr6 17607166 17607464 -171672090 - AluSx SINE Alu -14 298 1 1841 166 43 116 chr6 17607464 17607804 -171671750 + MER74A LTR ERVL 255 537 -21 927 192 6 0 chr6 17607822 17607978 -171671576 - FAM SINE Alu -18 157 1 713 265 41 0 chr6 17608118 17608314 -171671240 - MER105 DNA DNA 0 204 1 780 21 0 0 chr6 17609680 17609774 -171669780 + (CTG)n Simple_repeat Simple_repeat 2 95 0 223 169 15 62 chr6 17610522 17610587 -171668967 + GA-rich Low_complexity Low_complexity 1 62 0 1804 117 0 64 chr6 17610708 17611006 -171668548 + AluSc SINE Alu 31 309 0 219 36 0 0 chr6 17611447 17611475 -171668079 + (CA)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr6 17612119 17612146 -171667408 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 747 154 0 0 chr6 17612148 17612258 -171667296 - FLAM_C SINE Alu -26 117 8 1844 150 31 0 chr6 17612440 17612733 -171666821 - AluSx SINE Alu -10 302 1 2329 79 3 3 chr6 17613059 17613351 -171666203 - AluSx SINE Alu -20 292 1 218 204 56 0 chr6 17614438 17614492 -171665062 + GA-rich Low_complexity Low_complexity 1 57 0 517 216 288 0 chr6 17614886 17615025 -171664529 + MER5A DNA MER1_type 10 188 -1 1166 308 81 77 chr6 17615914 17616508 -171663046 + L3 LINE CR1 436 1035 -542 1787 150 86 4 chr6 17616508 17616788 -171662766 + AluJo SINE Alu 1 303 -9 1166 308 81 77 chr6 17616788 17616981 -171662573 + L3 LINE CR1 1035 1226 -351 338 278 111 50 chr6 17617000 17617180 -171662374 + L3 LINE CR1 1385 1575 -2 23 54 0 0 chr6 17617594 17617631 -171661923 + AT_rich Low_complexity Low_complexity 1 37 0 1107 238 83 45 chr6 17617650 17618095 -171661459 + MLT1C LTR MaLR 6 467 0 439 263 206 0 chr6 17618095 17618270 -171661284 - MIR SINE MIR -3 259 49 213 227 127 67 chr6 17619871 17620021 -171659533 - MIR SINE MIR -97 165 7 22 0 0 0 chr6 17620079 17620101 -171659453 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 31 chr6 17620242 17620262 -171659292 + AT_rich Low_complexity Low_complexity 1 21 -10 2252 96 0 0 chr6 17620262 17620553 -171659001 + AluY SINE Alu 1 291 -20 21 0 0 31 chr6 17620553 17620564 -171658990 + AT_rich Low_complexity Low_complexity 21 31 0 362 252 34 5 chr6 17621652 17621754 -171657800 - MIR SINE MIR -40 168 66 2433 85 0 0 chr6 17621837 17622131 -171657423 - AluSc SINE Alu -15 294 1 1221 241 108 70 chr6 17622158 17622676 -171656878 + MER77 LTR ERV1 62 599 -6 680 259 24 6 chr6 17623389 17623555 -171655999 + MER5B DNA MER1_type 10 178 0 2587 59 0 3 chr6 17623565 17623869 -171655685 - AluY SINE Alu -8 303 1 2141 92 26 29 chr6 17623928 17624234 -171655320 - AluSx SINE Alu -7 305 1 3138 170 48 50 chr6 17624339 17625092 -171654462 + L1MB3 LINE L1 5432 6182 -1 2293 71 4 4 chr6 17625114 17625416 -171654138 + AluY SINE Alu 1 302 0 467 277 18 24 chr6 17625761 17625927 -171653627 - MER58B DNA MER1_type 0 341 177 392 271 9 9 chr6 17626025 17626132 -171653422 - MER5A DNA MER1_type -82 107 1 2129 157 28 28 chr6 17626347 17626904 -171652650 + MLT2A2 LTR ERVL 3 554 0 210 37 0 0 chr6 17628109 17628136 -171651418 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1742 106 7 59 chr6 17628147 17628420 -171651134 - AluSq SINE Alu -54 259 1 23 0 0 0 chr6 17628420 17628443 -171651111 + AT_rich Low_complexity Low_complexity 1 23 0 309 238 12 12 chr6 17628694 17628778 -171650776 - AluJ/FRAM SINE Alu -1 301 218 5082 131 71 47 chr6 17628778 17629880 -171649674 + pTR5 LTR ERV1 769 2025 -413 244 298 0 0 chr6 17629880 17629974 -171649580 + LTR30 LTR ERV1 544 637 -85 1135 175 5 0 chr6 17629974 17630163 -171649391 + LTR12 LTR ERV1 369 558 -156 561 210 67 17 chr6 17630168 17630287 -171649267 - AluJo SINE Alu -58 254 130 667 248 0 0 chr6 17630291 17630416 -171649138 - AluJo SINE Alu -177 125 1 267 276 72 92 chr6 17630418 17630467 -171649087 + MIR SINE MIR 104 152 -110 1870 150 24 14 chr6 17630467 17630760 -171648794 + AluSq SINE Alu 1 296 -17 267 276 72 92 chr6 17630760 17630862 -171648692 + MIR SINE MIR 152 252 -10 312 268 43 46 chr6 17630904 17631023 -171648531 + MIR SINE MIR 10 125 -83 510 246 90 0 chr6 17631036 17631158 -171648396 + MIR SINE MIR 98 230 -32 2468 98 0 0 chr6 17631274 17631580 -171647974 + AluSc SINE Alu 1 306 -3 399 230 53 18 chr6 17632245 17632358 -171647196 + MIR SINE MIR 75 191 -71 336 271 60 84 chr6 17632802 17632851 -171646703 + MIR SINE MIR 95 144 -118 1817 155 3 23 chr6 17632851 17633154 -171646400 + AluJb SINE Alu 1 297 -15 336 271 60 84 chr6 17633154 17633270 -171646284 + MIR SINE MIR 144 256 -6 2106 140 0 16 chr6 17633439 17633753 -171645801 - AluJb SINE Alu -3 309 1 2723 160 49 13 chr6 17634725 17635251 -171644303 - MER44D DNA MER2_type 0 605 6 2237 119 0 3 chr6 17635444 17635747 -171643807 + AluSg SINE Alu 1 302 -8 297 287 85 24 chr6 17635872 17636036 -171643518 + MER5A DNA MER1_type 10 183 -6 * 331 248 99 49 chr6 17635899 17636041 -171643513 - MER5B DNA MER1_type -25 153 2 532 240 149 7 chr6 17636052 17636206 -171643348 + MER5B DNA MER1_type 3 178 0 2174 95 25 0 chr6 17636316 17636599 -171642955 - AluY SINE Alu -19 292 3 2427 80 0 7 chr6 17637612 17637914 -171641640 - AluSx SINE Alu -12 300 1 2237 102 0 0 chr6 17639262 17639615 -171639939 - AluSx SINE Alu 0 353 1 4834 85 25 9 chr6 17640177 17640616 -171638938 + L1PB1 LINE L1 5457 5912 -239 8969 90 21 8 chr6 17640616 17641878 -171637676 + MER52C LTR ERV1 1 1278 0 4834 85 25 9 chr6 17641878 17642121 -171637433 + L1PB1 LINE L1 5912 6150 -1 203 232 18 18 chr6 17642217 17642273 -171637281 - MER5B DNA MER1_type -4 174 119 24 0 0 0 chr6 17642431 17642455 -171637099 + AT_rich Low_complexity Low_complexity 1 24 0 283 261 76 42 chr6 17645255 17645374 -171634180 + L2 LINE L2 3191 3313 0 2416 65 7 0 chr6 17646355 17646647 -171632907 - AluY SINE Alu -17 294 1 571 69 0 0 chr6 17647116 17647188 -171632366 - L1PA5 LINE L1 -9 6145 6074 2284 109 0 7 chr6 17647223 17647526 -171632028 - AluSx SINE Alu -11 301 1 2406 103 0 0 chr6 17648546 17648856 -171630698 + AluSx SINE Alu 1 310 -2 249 33 0 0 chr6 17649380 17649410 -171630144 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 288 53 0 0 chr6 17649409 17649447 -171630107 + (CA)n Simple_repeat Simple_repeat 1 38 0 904 225 57 134 chr6 17649649 17649973 -171629581 + MLT1J LTR MaLR 24 293 -218 1840 122 4 11 chr6 17649973 17650243 -171629311 + AluSx SINE Alu 44 311 -1 904 225 57 134 chr6 17650243 17650447 -171629107 + MLT1J LTR MaLR 293 511 0 189 229 98 0 chr6 17650447 17650508 -171629046 - MIR3 SINE MIR -31 177 111 188 329 25 38 chr6 17652110 17652268 -171627286 - MIR SINE MIR -45 217 62 303 245 124 42 chr6 17652569 17652810 -171626744 - L1ME4a LINE L1 -2 6119 5859 1695 124 19 102 chr6 17653600 17653922 -171625632 - AluJo SINE Alu -17 295 1 1653 173 7 11 chr6 17654675 17655010 -171624544 + AluJb SINE Alu 1 334 0 2273 122 36 30 chr6 17655536 17655898 -171623656 + THE1B LTR MaLR 1 364 0 180 0 0 0 chr6 17659007 17659027 -171620527 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 1424 161 37 4 chr6 17659059 17659301 -171620253 + MLT1A1 LTR MaLR 116 365 0 292 327 64 35 chr6 17660343 17660545 -171619009 - MIR SINE MIR -48 214 7 1751 158 11 7 chr6 17660563 17660882 -171618672 - AluJb SINE Alu 0 322 3 3601 102 17 4 chr6 17660916 17661438 -171618116 + L1PB1 LINE L1 5620 6148 -3 294 236 34 79 chr6 17661604 17661693 -171617861 - L2 LINE L2 0 3272 3188 220 220 0 20 chr6 17661913 17661963 -171617591 + GA-rich Low_complexity Low_complexity 4 52 0 217 217 22 0 chr6 17662285 17662331 -171617223 - L2 LINE L2 -2 3270 3224 1850 194 94 27 chr6 17662849 17663033 -171616521 + MLT1C LTR MaLR 1 171 -296 2174 98 14 0 chr6 17663033 17663319 -171616235 + AluSg SINE Alu 1 290 -20 1850 194 94 27 chr6 17663319 17663572 -171615982 + MLT1C LTR MaLR 171 467 0 877 146 7 14 chr6 17664085 17664229 -171615325 + AluJo SINE Alu 1 143 -169 458 113 0 0 chr6 17664229 17664291 -171615263 + AluY SINE Alu 188 249 -62 1163 187 14 5 chr6 17664291 17664505 -171615049 + AluJo SINE Alu 85 300 -12 885 94 0 0 chr6 17664749 17664866 -171614688 + MER30 DNA MER1_type 1 117 -113 207 326 109 64 chr6 17666460 17666559 -171612995 - L2 LINE L2 -1 3271 3178 2232 112 146 8 chr6 17666559 17666935 -171612619 + MSTA LTR MaLR 1 428 0 207 326 109 64 chr6 17666935 17667240 -171612314 - L2 LINE L2 -94 3178 2849 945 127 0 15 chr6 17668861 17668995 -171610559 - FLAM_C SINE Alu -11 132 1 324 285 81 32 chr6 17669013 17669136 -171610418 + L2 LINE L2 3144 3272 0 25 31 0 0 chr6 17670915 17670947 -171608607 + AT_rich Low_complexity Low_complexity 1 32 0 2456 74 0 7 chr6 17671078 17671388 -171608166 + AluSg SINE Alu 1 308 -2 284 68 0 23 chr6 17672698 17672742 -171606812 + (CA)n Simple_repeat Simple_repeat 2 44 0 2264 114 0 3 chr6 17672902 17673208 -171606346 + AluSx SINE Alu 1 305 -7 24 53 0 0 chr6 17673255 17673293 -171606261 + AT_rich Low_complexity Low_complexity 1 38 0 315 291 50 62 chr6 17673357 17673536 -171606018 + MER5B DNA MER1_type 1 177 -1 2246 114 3 0 chr6 17674522 17674819 -171604735 - AluSq SINE Alu -15 298 1 475 177 291 14 chr6 17674850 17674991 -171604563 + MER5A DNA MER1_type 1 180 -9 32 0 0 0 chr6 17675246 17675278 -171604276 + AT_rich Low_complexity Low_complexity 1 32 0 1347 190 88 4 chr6 17675285 17675548 -171604006 - AluJo SINE Alu -17 295 11 886 134 0 0 chr6 17675759 17675878 -171603676 + AluSg SINE Alu 1 119 -191 911 170 0 0 chr6 17676439 17676610 -171602944 - L1MA6 LINE L1 0 6300 6130 651 216 162 18 chr6 17676931 17677057 -171602497 - MER63B DNA MER1_type -626 434 328 2007 76 8 8 chr6 17677057 17677321 -171602233 + AluSp SINE Alu 47 310 -3 651 216 162 18 chr6 17677321 17677416 -171602138 - MER63B DNA MER1_type -732 328 181 3228 171 17 17 chr6 17677419 17677759 -171601795 + Tigger3b DNA MER2_type 4 346 -2682 2342 92 3 13 chr6 17677759 17678064 -171601490 + AluSc SINE Alu 1 302 -7 3228 171 17 17 chr6 17678064 17678325 -171601229 + Tigger3b DNA MER2_type 345 605 -626 754 180 0 0 chr6 17678325 17678447 -171601107 + FLAM_C SINE Alu 3 124 -19 3529 114 31 75 chr6 17678448 17679114 -171600440 + Tigger3b DNA MER2_type 596 1232 0 763 259 31 0 chr6 17679116 17679278 -171600276 - MER63B DNA MER1_type -254 182 16 2032 107 26 0 chr6 17679285 17679556 -171599998 - AluSx SINE Alu -1 311 34 324 260 189 8 chr6 17679914 17680041 -171599513 - MIR SINE MIR -65 197 48 279 257 0 14 chr6 17680544 17680615 -171598939 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 832 180 40 92 chr6 17681649 17681877 -171597677 + MER20 DNA MER1_type 4 219 0 385 193 11 0 chr6 17682007 17682095 -171597459 + MER5A DNA MER1_type 18 106 -83 288 274 86 57 chr6 17682217 17682392 -171597162 + L2 LINE L2 258 437 -2877 888 172 10 69 chr6 17683350 17683553 -171596001 + AluJb SINE Alu 14 204 -108 2207 103 53 42 chr6 17683858 17684217 -171595337 - THE1B LTR MaLR -1 363 1 252 0 0 0 chr6 17684270 17684298 -171595256 + (T)n Simple_repeat Simple_repeat 1 28 0 335 298 0 11 chr6 17685071 17685165 -171594389 + (CATATA)n Simple_repeat Simple_repeat 5 97 0 1984 163 0 0 chr6 17685380 17685669 -171593885 - AluJb SINE Alu -23 289 1 246 283 17 0 chr6 17686680 17686740 -171592814 + (CACG)n Simple_repeat Simple_repeat 1 61 0 4872 48 7 0 chr6 17688489 17689076 -171590478 + LTR10C LTR ERV1 1 591 0 795 194 26 7 chr6 17690776 17690931 -171588623 - FRAM SINE Alu -23 153 1 232 303 15 0 chr6 17690948 17691014 -171588540 + L2 LINE L2 3247 3313 0 2184 129 0 0 chr6 17691391 17691694 -171587860 + AluSx SINE Alu 1 303 -9 4877 165 19 25 chr6 17692477 17693477 -171586077 + L1MB5 LINE L1 5179 6173 -1 2240 108 0 26 chr6 17695567 17695872 -171583682 - AluSx SINE Alu -15 297 1 21 0 0 0 chr6 17696948 17696969 -171582585 + AT_rich Low_complexity Low_complexity 1 21 0 208 211 0 53 chr6 17697835 17697892 -171581662 - L2 LINE L2 -78 3194 3141 206 118 0 0 chr6 17697972 17698006 -171581548 + (A)n Simple_repeat Simple_repeat 1 34 0 354 152 61 0 chr6 17698914 17698980 -171580574 - MLT1E3 LTR MaLR 0 624 555 1984 29 0 13 chr6 17699012 17699250 -171580304 - L1PA3 LINE L1 0 6155 5921 2200 215 65 19 chr6 17699250 17699831 -171579723 - MLT1E3 LTR MaLR -55 599 1 2354 88 0 38 chr6 17699856 17700175 -171579379 + AluSq SINE Alu 1 307 -6 1121 134 29 0 chr6 17700191 17700362 -171579192 + AluSg/x SINE Alu 132 307 -5 674 324 73 32 chr6 17700362 17700733 -171578821 - MLT1K LTR MaLR -97 491 106 201 154 0 0 chr6 17701279 17701318 -171578236 + T-rich Low_complexity Low_complexity 1 39 0 912 150 0 7 chr6 17701453 17701606 -171577948 + MER5A DNA MER1_type 2 153 -36 950 191 0 0 chr6 17701619 17701781 -171577773 - FRAM SINE Alu -4 162 1 200 333 30 30 chr6 17702012 17702144 -171577410 + L3b LINE CR1 1216 1347 -236 322 319 86 43 chr6 17703535 17703886 -171575668 + L2 LINE L2 2946 3311 -2 405 0 0 0 chr6 17706390 17706460 -171573094 + (CA)n Simple_repeat Simple_repeat 1 115 0 405 0 0 0 chr6 17706460 17706505 -171573049 + (CA)n Simple_repeat Simple_repeat 2 46 0 184 319 14 14 chr6 17706873 17706942 -171572612 + MIR SINE MIR 36 104 -104 1866 170 0 10 chr6 17706996 17707302 -171572252 - AluJb SINE Alu -9 303 1 205 333 124 47 chr6 17708357 17708486 -171571068 + MIR3 SINE MIR 30 168 -40 477 245 101 79 chr6 17708946 17709224 -171570330 + L2 LINE L2 3027 3310 -3 2216 121 0 10 chr6 17711275 17711582 -171567972 - AluSx SINE Alu -7 305 2 2210 94 0 11 chr6 17715304 17715581 -171563973 + AluSx SINE Alu 25 298 -14 211 289 107 25 chr6 17715623 17715744 -171563810 + MIR SINE MIR 16 146 -62 463 320 35 10 chr6 17715799 17716002 -171563552 + MIR SINE MIR 29 236 -26 276 30 0 0 chr6 17716587 17716620 -171562934 + (TG)n Simple_repeat Simple_repeat 1 33 0 734 224 178 63 chr6 17716847 17717258 -171562296 - MLT1H LTR MaLR 0 549 92 273 282 93 26 chr6 17717266 17717486 -171562068 - L2 LINE L2 -320 2952 2715 276 149 0 0 chr6 17719741 17719788 -171559766 + (CA)n Simple_repeat Simple_repeat 1 47 0 279 0 0 0 chr6 17720230 17720261 -171559293 + (TG)n Simple_repeat Simple_repeat 2 32 0 714 162 0 9 chr6 17720614 17720725 -171558829 - FLAM_C SINE Alu -16 127 18 2480 174 50 6 chr6 17720953 17721448 -171558106 - L1MB3 LINE L1 0 6183 5667 2276 104 13 0 chr6 17721472 17721771 -171557783 - AluSq SINE Alu -10 303 1 210 91 0 0 chr6 17722288 17722321 -171557233 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 184 244 0 0 chr6 17722323 17722364 -171557190 - L2 LINE L2 0 3313 3273 2428 84 0 13 chr6 17722964 17723275 -171556279 + AluY SINE Alu 1 307 -4 323 267 43 74 chr6 17724591 17724917 -171554637 - L1ME4a LINE L1 -24 6097 5782 2328 96 3 10 chr6 17725105 17725418 -171554136 - AluY SINE Alu 0 311 1 216 0 0 0 chr6 17725969 17725993 -171553561 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2039 119 22 0 chr6 17725995 17726272 -171553282 - AluSq SINE Alu -30 283 1 1626 214 120 20 chr6 17726379 17726837 -171552717 - L1MC1 LINE L1 0 6333 5830 569 114 0 0 chr6 17726838 17726917 -171552637 - LTR12 LTR ERV1 -11 703 625 342 147 69 98 chr6 17726917 17727019 -171552535 - LTR30 LTR ERV1 -80 642 379 746 189 98 76 chr6 17727020 17727304 -171552250 - LTR12 LTR ERV1 -429 1523 48 268 163 0 0 chr6 17727304 17727347 -171552207 - LTR30 LTR ERV1 -679 43 1 10575 96 14 11 chr6 17727347 17728831 -171550723 - HERV9 LTR ERV1 0 8399 6911 38823 110 9 10 chr6 17728835 17735158 -171544396 - HERV9 LTR ERV1 -1921 6478 79 707 134 22 28 chr6 17735158 17735304 -171544250 - LTR12 LTR ERV1 0 714 301 319 232 30 20 chr6 17735304 17735403 -171544151 - LTR30 LTR ERV1 -79 643 544 274 176 88 15 chr6 17735403 17735471 -171544083 - LTR12 LTR ERV1 -437 277 205 742 172 142 12 chr6 17735511 17735680 -171543874 - LTR12 LTR ERV1 -480 234 44 241 186 0 0 chr6 17735680 17735723 -171543831 - LTR30 LTR ERV1 -679 43 1 2412 166 25 4 chr6 17735723 17736240 -171543314 - L1MB7 LINE L1 -359 5843 5283 521 238 9 0 chr6 17737180 17737285 -171542269 + L2 LINE L2 3198 3303 -10 2063 101 64 10 chr6 17737298 17737594 -171541960 - AluSq SINE Alu -1 312 1 188 204 0 23 chr6 17737618 17737662 -171541892 + MIR SINE MIR 86 128 -134 222 91 0 0 chr6 17737842 17737875 -171541679 + (ATG)n Simple_repeat Simple_repeat 3 35 0 2186 73 0 4 chr6 17737973 17738246 -171541308 - AluY SINE Alu -11 300 29 197 375 58 10 chr6 17738250 17738354 -171541200 - MIR SINE MIR -58 150 42 210 302 302 0 chr6 17739158 17739254 -171540300 - L2 LINE L2 0 3272 3148 2278 105 3 0 chr6 17739675 17739979 -171539575 - AluSp SINE Alu -8 305 1 1736 163 17 7 chr6 17739979 17740267 -171539287 - AluSx SINE Alu -21 291 1 184 247 82 41 chr6 17740663 17740736 -171538818 - MER5B DNA MER1_type -66 112 37 205 233 67 17 chr6 17742805 17742865 -171536689 - L2 LINE L2 -1 3271 3209 433 127 0 24 chr6 17742877 17743002 -171536552 + L1MA4 LINE L1 6010 6291 -9 470 283 215 29 chr6 17743013 17743445 -171536109 - L2 LINE L2 -107 3206 2698 872 160 0 0 chr6 17743796 17743927 -171535627 + AluJo/FLAM SINE Alu 1 131 -181 1953 149 3 0 chr6 17743929 17744217 -171535337 + AluSx SINE Alu 1 289 -23 34 24 0 0 chr6 17744217 17744258 -171535296 + AT_rich Low_complexity Low_complexity 1 41 0 404 295 50 14 chr6 17744853 17744992 -171534562 - MER5A DNA MER1_type -10 179 36 7565 21 0 0 chr6 17745112 17745930 -171533624 + L1PA3 LINE L1 5338 6155 0 2852 217 64 99 chr6 17745940 17747320 -171532234 - L1MC5 LINE L1 -47 7914 6609 2511 60 0 0 chr6 17747320 17747618 -171531936 - AluY SINE Alu -13 298 1 2852 217 64 99 chr6 17747618 17747807 -171531747 - L1MC5 LINE L1 -1352 6609 6415 28 0 0 0 chr6 17748055 17748083 -171531471 + AT_rich Low_complexity Low_complexity 1 28 0 1074 141 0 60 chr6 17748230 17748415 -171531139 - AluJo SINE Alu 0 312 139 2003 151 0 0 chr6 17748418 17748723 -171530831 - AluSx SINE Alu -7 305 1 430 294 106 25 chr6 17749158 17749393 -171530161 - HAL1b LINE L1 -749 599 346 350 316 69 53 chr6 17749413 17749660 -171529894 - HAL1b LINE L1 -1063 285 35 973 166 0 0 chr6 17750783 17750940 -171528614 - AluJo SINE Alu -1 311 155 1016 127 27 7 chr6 17751203 17751353 -171528201 - AluJo SINE Alu -159 153 1 2258 107 0 3 chr6 17751362 17751661 -171527893 - AluSq SINE Alu -15 298 1 230 73 24 0 chr6 17752075 17752116 -171527438 + (CCCCCG)n Simple_repeat Simple_repeat 6 47 0 1404 136 0 62 chr6 17753172 17753415 -171526139 + MER1B DNA MER1_type 1 228 -69 1177 269 273 9 chr6 17754214 17755158 -171524396 + L2 LINE L2 2103 3306 -7 634 271 106 19 chr6 17755176 17755255 -171524299 - MIR SINE MIR -1 261 190 2298 114 0 0 chr6 17755255 17755563 -171523991 + AluSx SINE Alu 1 308 -4 634 271 106 19 chr6 17755563 17755729 -171523825 - MIR SINE MIR -72 190 10 1062 294 59 50 chr6 17755771 17756515 -171523039 + L2 LINE L2 1853 2603 -711 401 259 94 62 chr6 17756545 17756769 -171522785 + L2 LINE L2 3078 3308 -5 269 345 34 0 chr6 17757560 17757679 -171521875 - MIR SINE MIR -61 147 25 23 33 0 0 chr6 17758290 17758320 -171521234 + AT_rich Low_complexity Low_complexity 1 30 0 216 200 0 0 chr6 17758727 17758772 -171520782 + A-rich Low_complexity Low_complexity 1 45 0 303 227 193 17 chr6 17759742 17759861 -171519693 + MIR SINE MIR 110 249 -13 351 65 0 0 chr6 17760700 17760746 -171518808 + (CA)n Simple_repeat Simple_repeat 2 47 0 185 246 15 0 chr6 17761085 17761150 -171518404 + CT-rich Low_complexity Low_complexity 2 67 0 230 303 106 28 chr6 17761544 17761686 -171517868 + MIR SINE MIR 40 192 -70 2216 109 30 0 chr6 17761735 17762038 -171517516 + AluSq SINE Alu 1 312 -1 649 238 124 0 chr6 17762737 17762930 -171516624 + MIR SINE MIR 33 249 -13 600 64 13 0 chr6 17762931 17763009 -171516545 + MADE1 DNA Mariner 1 79 -1 2148 130 0 0 chr6 17763034 17763334 -171516220 + AluSq SINE Alu 1 300 -13 1034 146 36 0 chr6 17764094 17764259 -171515295 + MER20 DNA MER1_type 49 219 0 183 162 0 0 chr6 17764794 17764831 -171514723 + CT-rich Low_complexity Low_complexity 2 38 0 279 54 0 0 chr6 17764831 17764868 -171514686 + (CA)n Simple_repeat Simple_repeat 1 37 0 237 33 0 0 chr6 17770597 17770627 -171508927 + (GA)n Simple_repeat Simple_repeat 1 30 0 46 19 0 0 chr6 17771975 17772028 -171507526 + AT_rich Low_complexity Low_complexity 1 53 0 621 251 0 108 chr6 17772117 17772205 -171507349 - MIR SINE MIR -3 259 163 773 202 0 0 chr6 17772205 17772334 -171507220 + FLAM_A SINE Alu 1 129 -4 621 251 0 108 chr6 17772334 17772468 -171507086 - MIR SINE MIR -99 163 61 1985 30 0 30 chr6 17772658 17772892 -171506662 + L1PA3 LINE L1 5926 6152 -3 210 268 113 14 chr6 17773277 17773348 -171506206 - L2 LINE L2 0 3313 3236 2334 96 0 0 chr6 17773715 17774018 -171505536 + AluY SINE Alu 1 303 -8 1564 186 20 30 chr6 17774118 17774419 -171505135 + AluJo SINE Alu 1 298 -14 404 259 15 52 chr6 17774856 17774991 -171504563 - MIR SINE MIR 0 262 133 2247 103 3 3 chr6 17775923 17776235 -171503319 + AluSx SINE Alu 1 312 0 21 57 0 0 chr6 17776281 17776316 -171503238 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 17776569 17776590 -171502964 + AT_rich Low_complexity Low_complexity 1 21 0 266 172 31 0 chr6 17777840 17777904 -171501650 + (TTCA)n Simple_repeat Simple_repeat 3 68 0 508 285 140 22 chr6 17778133 17778361 -171501193 + MIR SINE MIR 2 256 -6 235 316 125 7 chr6 17779431 17779567 -171499987 - L2 LINE L2 -2 3311 3160 21 57 0 0 chr6 17780162 17780197 -171499357 + AT_rich Low_complexity Low_complexity 1 35 0 2280 118 0 3 chr6 17780297 17780610 -171498944 - AluSx SINE Alu 0 312 1 2171 129 0 0 chr6 17781779 17782082 -171497472 - AluSx SINE Alu -9 303 1 251 303 15 0 chr6 17782459 17782525 -171497029 - L2 LINE L2 0 3313 3247 860 194 26 7 chr6 17782542 17782697 -171496857 + FRAM SINE Alu 1 153 -23 193 254 8 185 chr6 17782712 17782842 -171496712 + MIR SINE MIR 34 140 -122 182 294 20 0 chr6 17784279 17784330 -171495224 + MIR SINE MIR 82 133 -75 5102 48 7 0 chr6 17784396 17784983 -171494571 - LTR10C LTR ERV1 0 591 1 246 283 17 0 chr6 17786731 17786791 -171492763 + (CGTG)n Simple_repeat Simple_repeat 1 61 0 1959 167 0 0 chr6 17787802 17788090 -171491464 + AluJb SINE Alu 1 288 -24 335 298 0 11 chr6 17788306 17788400 -171491154 + (TATATG)n Simple_repeat Simple_repeat 5 97 0 342 0 0 0 chr6 17789172 17789210 -171490344 + (A)n Simple_repeat Simple_repeat 1 38 0 2223 100 53 42 chr6 17789263 17789622 -171489932 + THE1B LTR MaLR 1 363 -1 888 172 10 69 chr6 17789926 17790129 -171489425 - AluJb SINE Alu -108 204 14 288 274 86 57 chr6 17791087 17791262 -171488292 - L2 LINE L2 -2877 437 258 385 193 11 0 chr6 17791384 17791472 -171488082 - MER5A DNA MER1_type -83 106 18 180 233 0 0 chr6 17792257 17792300 -171487254 + MER5A DNA MER1_type 67 109 -80 1822 164 26 7 chr6 17792480 17792785 -171486769 + AluJb SINE Alu 1 311 -1 550 147 0 0 chr6 17793635 17793710 -171485844 + AluJ/FLAM SINE Alu 16 90 -222 2023 74 0 8 chr6 17796746 17797037 -171482517 + AluSc SINE Alu 28 316 0 465 246 65 116 chr6 17798421 17798714 -171480840 + MLT1J2 LTR MaLR 132 450 0 472 281 44 7 chr6 17799346 17799481 -171480073 + MIR SINE MIR 77 216 -46 22 0 0 0 chr6 17799482 17799504 -171480050 + AT_rich Low_complexity Low_complexity 1 22 0 282 368 0 0 chr6 17799694 17799811 -171479743 + (CA)n Simple_repeat Simple_repeat 2 118 0 503 265 139 25 chr6 17799964 17800202 -171479352 - L2 LINE L2 -1 3312 3048 219 36 0 0 chr6 17803143 17803171 -171476383 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2394 62 20 0 chr6 17803300 17803605 -171475949 + AluY SINE Alu 1 311 0 255 340 49 6 chr6 17804098 17804260 -171475294 + MIR3 SINE MIR 33 201 -7 22 35 0 0 chr6 17804716 17804745 -171474809 + AT_rich Low_complexity Low_complexity 1 29 0 911 129 0 0 chr6 17805096 17805220 -171474334 - FLAM_C SINE Alu -19 124 1 319 289 26 0 chr6 17805280 17805394 -171474160 - MIR SINE MIR -118 144 28 723 159 45 64 chr6 17805430 17805587 -171473967 - AluJo SINE Alu -73 239 86 362 307 102 0 chr6 17806497 17806634 -171472920 + MIR SINE MIR 22 172 -90 2001 116 4 0 chr6 17806789 17807048 -171472506 + AluSx SINE Alu 1 260 -52 215 79 26 0 chr6 17807048 17807086 -171472468 + (CAA)n Simple_repeat Simple_repeat 1 39 0 4712 93 31 4 chr6 17807154 17807830 -171471724 + L1MA1 LINE L1 5609 6302 0 269 159 16 0 chr6 17808029 17808092 -171471462 + (TA)n Simple_repeat Simple_repeat 1 64 0 2472 83 0 0 chr6 17808501 17808803 -171470751 + AluSq SINE Alu 1 302 -11 2260 112 0 0 chr6 17810038 17810342 -171469212 + AluSx SINE Alu 2 305 -7 442 207 111 0 chr6 17810673 17810808 -171468746 - MIR SINE MIR -56 206 57 2234 113 7 0 chr6 17810915 17811208 -171468346 + AluSx SINE Alu 1 295 -17 1203 125 15 10 chr6 17812592 17812792 -171466762 + L1PA13 LINE L1 5963 6163 0 2361 103 0 0 chr6 17813359 17813661 -171465893 + AluSq SINE Alu 1 302 -11 1022 224 23 0 chr6 17813965 17814184 -171465370 - MER58A DNA MER1_type 0 224 1 3227 135 19 29 chr6 17814531 17815245 -171464309 + L1MB3 LINE L1 5289 6166 0 589 254 75 30 chr6 17816469 17816670 -171462884 + MER63A DNA MER1_type 1 210 0 1843 162 32 60 chr6 17817255 17817656 -171461898 + L1MC3 LINE L1 6708 7097 -688 362 243 47 28 chr6 17817656 17817763 -171461791 + MLT1F1 LTR MaLR 35 143 -424 329 185 241 19 chr6 17817780 17817888 -171461666 + L1MC3 LINE L1 7201 7332 -453 * 359 177 0 0 chr6 17817884 17817946 -171461608 - L1MC4 LINE L1 -473 7569 7508 1557 145 31 55 chr6 17817946 17818274 -171461280 + AluJb SINE Alu 1 321 0 403 254 35 0 chr6 17818401 17818515 -171461039 + L1MC4 LINE L1 7924 8041 -1 2183 131 0 3 chr6 17819441 17819755 -171459799 + AluSq SINE Alu 1 313 0 1640 114 0 0 chr6 17819839 17820049 -171459505 + AluSq SINE Alu 1 210 -103 288 189 283 9 chr6 17820251 17820357 -171459197 + MIR SINE MIR 86 220 -42 2292 30 7 0 chr6 17820452 17820722 -171458832 - L1PA4 LINE L1 0 6155 5884 2119 110 7 0 chr6 17820722 17821004 -171458550 - AluSx SINE Alu -28 284 1 745 238 54 18 chr6 17822184 17822243 -171457311 - MIR SINE MIR -3 259 204 2247 84 7 3 chr6 17822243 17822528 -171457026 - AluSx SINE Alu -24 288 3 745 238 54 18 chr6 17822528 17822691 -171456863 - MIR SINE MIR -58 204 29 215 328 16 0 chr6 17822955 17823019 -171456535 - MIR SINE MIR -63 145 81 21 0 0 0 chr6 17823053 17823074 -171456480 + AT_rich Low_complexity Low_complexity 1 21 0 394 331 97 0 chr6 17823752 17823897 -171455657 - MIR3 SINE MIR -11 197 39 1966 144 9 35 chr6 17824698 17825046 -171454508 - MER44D DNA MER2_type 0 609 1 21 36 0 0 chr6 17825420 17825448 -171454106 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr6 17825651 17825672 -171453882 + (A)n Simple_repeat Simple_repeat 1 21 0 332 243 58 19 chr6 17826065 17826168 -171453386 + MIR3 SINE MIR 78 184 -24 214 227 0 121 chr6 17828541 17828607 -171450947 + MIR SINE MIR 18 75 -133 1844 205 65 23 chr6 17829514 17829957 -171449597 - MLT1C LTR MaLR 0 467 6 7063 143 32 18 chr6 17829979 17830663 -171448891 - Tigger3b DNA MER2_type -1797 1231 521 2047 116 10 10 chr6 17830663 17830978 -171448576 + AluSx SINE Alu 4 312 0 7063 143 32 18 chr6 17830978 17831507 -171448047 - Tigger3b DNA MER2_type -2507 521 1 2248 106 7 0 chr6 17831634 17831936 -171447618 + AluSp SINE Alu 1 304 -9 1356 136 4 26 chr6 17831943 17832171 -171447383 + L1PA8A LINE L1 5909 6131 0 382 293 23 2 chr6 17832602 17832758 -171446796 - MIR SINE MIR -63 145 17 272 230 159 15 chr6 17832903 17833044 -171446510 - MIR SINE MIR -40 168 37 185 341 0 12 chr6 17833692 17833777 -171445777 + L2 LINE L2 2228 2311 -1003 361 308 17 0 chr6 17835531 17835651 -171443903 + L2 LINE L2 3190 3311 -2 2313 94 0 7 chr6 17836474 17836772 -171442782 - AluSq SINE Alu -17 296 1 1092 98 0 0 chr6 17836776 17836909 -171442645 - AluSq/x SINE Alu -179 133 1 280 188 31 0 chr6 17837371 17837435 -171442119 - MIR SINE MIR -124 138 73 401 297 121 45 chr6 17838686 17839060 -171440494 + L1MC4a LINE L1 4037 4456 -1690 2084 133 3 10 chr6 17839060 17839369 -171440185 + AluSq SINE Alu 1 307 -6 401 297 121 45 chr6 17839369 17839466 -171440088 + L1MC4a LINE L1 4456 4544 -1602 269 293 148 24 chr6 17839518 17839897 -171439657 + L1MC4a LINE L1 4622 5047 -1099 * 1283 203 15 14 chr6 17839870 17840150 -171439404 + L1MB7 LINE L1 5829 6109 -75 1095 161 6 0 chr6 17840174 17840348 -171439206 + FRAM SINE Alu 1 175 -1 228 150 0 117 chr6 17840348 17840388 -171439166 + L1MB7 LINE L1 6132 6164 -20 1799 156 20 13 chr6 17840388 17840689 -171438865 - AluJo SINE Alu -9 303 1 228 150 0 117 chr6 17840689 17840708 -171438846 + L1MB7 LINE L1 6164 6184 0 1952 251 46 34 chr6 17840947 17841665 -171437889 + L1MC4a LINE L1 5284 6019 -102 23 33 0 0 chr6 17841870 17841900 -171437654 + AT_rich Low_complexity Low_complexity 1 30 0 1742 110 16 0 chr6 17842232 17842478 -171437076 + AluSq SINE Alu 64 313 0 2062 139 3 0 chr6 17844118 17844419 -171435135 + AluJb SINE Alu 9 310 -2 668 169 0 7 chr6 17844438 17844574 -171434980 + GA-rich Low_complexity Low_complexity 1 135 0 328 273 58 50 chr6 17846034 17846173 -171433381 + MIR SINE MIR 23 162 -100 2622 160 13 17 chr6 17846385 17846861 -171432693 + L1MB7 LINE L1 5653 6126 -58 195 100 0 0 chr6 17847573 17847603 -171431951 + (TAA)n Simple_repeat Simple_repeat 2 31 0 800 172 55 43 chr6 17848458 17848565 -171430989 - AluJo SINE Alu -77 235 131 225 0 0 0 chr6 17848565 17848590 -171430964 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2184 85 0 11 chr6 17848590 17848908 -171430646 + AluY SINE Alu 1 315 0 800 172 55 43 chr6 17848908 17848961 -171430593 - AluJo SINE Alu -180 132 71 2252 86 0 35 chr6 17851252 17851565 -171427989 + AluSx SINE Alu 1 302 -10 858 273 76 32 chr6 17851701 17852111 -171427443 + MLT1J2 LTR MaLR 1 428 -22 1075 184 0 0 chr6 17853505 17853679 -171425875 - FRAM SINE Alu -7 169 1 1805 173 0 7 chr6 17853697 17853981 -171425573 - AluJo SINE Alu -30 282 1 1845 110 7 46 chr6 17856042 17856220 -171423334 - AluSx SINE Alu -7 305 122 198 0 0 0 chr6 17856220 17856242 -171423312 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2237 74 0 11 chr6 17856242 17856527 -171423027 - AluSx SINE Alu -30 282 1 1845 110 7 46 chr6 17856527 17856629 -171422925 - AluSx SINE Alu -188 124 35 2394 230 92 70 chr6 17856638 17857525 -171422029 - L1MC4a LINE L1 -3 7805 6934 261 377 57 29 chr6 17857661 17857836 -171421718 - L2 LINE L2 -45 3227 3048 2395 107 0 0 chr6 17859260 17859570 -171419984 + AluSx SINE Alu 1 310 -2 21 57 0 0 chr6 17859687 17859722 -171419832 + AT_rich Low_complexity Low_complexity 1 35 0 617 315 25 10 chr6 17859859 17860062 -171419492 - MIR SINE MIR -50 212 7 214 304 98 11 chr6 17861409 17861501 -171418053 - MIR3 SINE MIR -21 187 88 232 162 0 0 chr6 17861767 17861804 -171417750 - L2 LINE L2 -11 3302 3266 * 241 193 121 60 chr6 17861772 17861855 -171417699 - MIR SINE MIR -10 252 165 461 70 0 14 chr6 17863214 17863285 -171416269 + (TG)n Simple_repeat Simple_repeat 1 70 0 309 333 14 14 chr6 17864294 17864435 -171415119 + L2 LINE L2 3173 3313 0 442 233 212 8 chr6 17866015 17866175 -171413379 - MIR SINE MIR -42 220 31 312 323 0 0 chr6 17866238 17866331 -171413223 - L1MC4 LINE L1 -1335 6707 6615 23 0 0 0 chr6 17866382 17866405 -171413149 + AT_rich Low_complexity Low_complexity 1 23 0 606 306 82 69 chr6 17866673 17866971 -171412583 + L1ME4a LINE L1 5426 5736 -385 1849 158 0 44 chr6 17866971 17867288 -171412266 + AluJb SINE Alu 3 305 -7 606 306 82 69 chr6 17867288 17867440 -171412114 + L1ME4a LINE L1 5736 5884 -237 306 148 0 0 chr6 17868032 17868086 -171411468 + (CA)n Simple_repeat Simple_repeat 1 54 0 336 316 52 29 chr6 17868477 17868613 -171410941 - MIR SINE MIR -4 258 120 2253 101 3 0 chr6 17868761 17869048 -171410506 + AluSc SINE Alu 5 292 -17 216 301 48 12 chr6 17869586 17869669 -171409885 + L2 LINE L2 2924 3009 -263 2179 110 7 0 chr6 17869669 17869969 -171409585 + AluSq SINE Alu 1 302 -11 364 357 36 89 chr6 17870346 17870794 -171408760 + L2 LINE L2 2849 3272 0 281 118 20 0 chr6 17870799 17870850 -171408704 + GA-rich Low_complexity Low_complexity 3 54 0 224 169 52 0 chr6 17871406 17871483 -171408071 + (TA)n Simple_repeat Simple_repeat 1 81 0 498 280 40 0 chr6 17871595 17871720 -171407834 + MIR SINE MIR 129 258 -4 1791 159 0 26 chr6 17872687 17872855 -171406699 - AluJo SINE Alu -11 301 143 1902 100 79 7 chr6 17872855 17873135 -171406419 - AluSp SINE Alu -9 304 5 1791 159 0 26 chr6 17873135 17873275 -171406279 - AluJo SINE Alu -169 143 1 198 275 175 0 chr6 17873546 17873626 -171405928 + L2 LINE L2 2942 3035 -237 283 277 100 54 chr6 17873673 17873803 -171405751 + L2 LINE L2 3137 3272 0 712 153 27 0 chr6 17874678 17874789 -171404765 - LTR12 LTR ERV1 -234 480 367 253 270 14 0 chr6 17874795 17874869 -171404685 - LTR30 LTR ERV1 -95 627 553 912 156 50 105 chr6 17874898 17875183 -171404371 - LTR12 LTR ERV1 -435 1800 55 271 211 0 0 chr6 17875183 17875235 -171404319 - LTR30 LTR ERV1 -670 52 1 732 204 22 88 chr6 17875603 17875829 -171403725 - L1ME3A LINE L1 -174 5996 5786 306 194 0 0 chr6 17875838 17875900 -171403654 + (TA)n Simple_repeat Simple_repeat 1 62 0 324 234 171 9 chr6 17876284 17876395 -171403159 - L1ME3A LINE L1 -496 5625 5528 2458 81 0 0 chr6 17876492 17876799 -171402755 - AluSc SINE Alu -2 307 1 1877 135 24 7 chr6 17878016 17878313 -171401241 - AluJo SINE Alu -10 302 1 2094 120 0 7 chr6 17879459 17879759 -171399795 - AluSx SINE Alu -14 298 1 760 165 23 28 chr6 17879992 17880168 -171399386 + L1MA7 LINE L1 6117 6291 0 322 352 56 0 chr6 17880440 17880582 -171398972 + MIR SINE MIR 30 179 -83 2281 105 0 0 chr6 17881449 17881743 -171397811 + AluSc SINE Alu 1 294 -15 2337 81 0 10 chr6 17883587 17883884 -171395670 + AluY SINE Alu 1 294 -17 2237 104 0 3 chr6 17884471 17884768 -171394786 - AluSc SINE Alu -13 296 1 185 295 98 0 chr6 17884900 17884961 -171394593 + MIR SINE MIR 84 150 -112 192 77 0 0 chr6 17884962 17884988 -171394566 + (TATAA)n Simple_repeat Simple_repeat 2 27 0 1491 195 6 35 chr6 17886228 17886546 -171393008 + AluJo SINE Alu 1 309 -3 1488 190 45 39 chr6 17886594 17886904 -171392650 - AluJo SINE Alu 0 312 1 482 260 20 41 chr6 17887290 17887436 -171392118 - MIR3 SINE MIR -9 199 57 383 295 21 74 chr6 17887777 17887864 -171391690 + MIR SINE MIR 73 146 -116 1740 145 6 68 chr6 17887864 17888188 -171391366 + AluJo SINE Alu 1 304 -8 383 295 21 74 chr6 17888188 17888290 -171391264 + MIR SINE MIR 146 252 -10 233 75 25 0 chr6 17888498 17888538 -171391016 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 2306 102 0 0 chr6 17888541 17888846 -171390708 - AluY SINE Alu -6 305 1 189 0 0 0 chr6 17888886 17888907 -171390647 + (TG)n Simple_repeat Simple_repeat 2 22 0 2101 95 50 3 chr6 17888909 17889192 -171390362 - AluSq SINE Alu -17 296 1 578 253 13 27 chr6 17889208 17889358 -171390196 + MIR3 SINE MIR 57 204 -4 341 293 69 34 chr6 17892061 17892264 -171387290 + HAL1b LINE L1 71 242 -1106 270 0 0 0 chr6 17892273 17892303 -171387251 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 32 0 0 0 chr6 17892340 17892372 -171387182 + AT_rich Low_complexity Low_complexity 1 32 0 1466 181 7 27 chr6 17892760 17893058 -171386496 + AluJo SINE Alu 1 292 -20 457 273 151 62 chr6 17893740 17893868 -171385686 + L1MB3 LINE L1 2445 2560 -3586 2559 68 0 0 chr6 17893868 17894177 -171385377 - AluY SINE Alu -2 309 1 457 273 151 62 chr6 17894177 17894598 -171384956 + L1MB3 LINE L1 2560 3043 -3103 2241 98 3 7 chr6 17894632 17894927 -171384627 + AluSc SINE Alu 5 298 -11 2903 10 0 0 chr6 17895002 17895314 -171384240 + AluYb8 SINE Alu 1 312 -6 28 61 0 0 chr6 17895365 17895414 -171384140 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr6 17895503 17895531 -171384023 + AT_rich Low_complexity Low_complexity 1 28 0 1806 149 14 20 chr6 17895563 17895859 -171383695 + AluJo SINE Alu 1 294 -18 2085 117 0 7 chr6 17896659 17896979 -171382575 + AluSx SINE Alu 1 318 0 306 303 106 61 chr6 17897696 17897770 -171381784 + L1MB3 LINE L1 3998 4067 -2079 2149 118 3 7 chr6 17897770 17898067 -171381487 + AluSx SINE Alu 1 296 -16 306 303 106 61 chr6 17898067 17898256 -171381298 + L1MB3 LINE L1 4067 4273 -1873 2115 135 0 0 chr6 17898276 17898564 -171380990 + AluSx SINE Alu 1 288 -24 255 95 88 14 chr6 17898564 17898711 -171380843 + (TA)n Simple_repeat Simple_repeat 1 158 0 1791 155 49 18 chr6 17898819 17899148 -171380406 + MER44D DNA MER2_type 1 609 0 21 0 0 0 chr6 17899340 17899361 -171380193 + AT_rich Low_complexity Low_complexity 1 21 0 2007 56 0 12 chr6 17899556 17899805 -171379749 + AluY SINE Alu 56 301 -10 23 0 0 0 chr6 17900071 17900094 -171379460 + AT_rich Low_complexity Low_complexity 1 23 0 3019 63 6 0 chr6 17900094 17900460 -171379094 + L1PA8 LINE L1 5805 6172 0 2215 86 35 3 chr6 17900467 17900757 -171378797 + AluSx SINE Alu 1 299 -13 610 277 106 66 chr6 17900958 17901428 -171378126 + L1MB3 LINE L1 5293 5781 -340 792 221 35 87 chr6 17901733 17901781 -171377773 + MIR SINE MIR 22 71 -191 801 163 7 22 chr6 17901781 17901916 -171377638 + FLAM_A SINE Alu 1 133 0 792 221 35 87 chr6 17901916 17902121 -171377433 + MIR SINE MIR 71 262 0 183 42 0 0 chr6 17902255 17902279 -171377275 + (TC)n Simple_repeat Simple_repeat 1 24 0 351 0 0 0 chr6 17902281 17902320 -171377234 + (CA)n Simple_repeat Simple_repeat 2 40 0 248 228 10 50 chr6 17902383 17902484 -171377070 - L1ME LINE L1 -385 5736 5640 2086 92 41 10 chr6 17903458 17903750 -171375804 + AluSx SINE Alu 1 301 -11 511 303 17 28 chr6 17903849 17904027 -171375527 + MIR SINE MIR 2 177 -85 248 289 180 39 chr6 17904074 17904331 -171375223 - L2 LINE L2 -25 3288 2884 221 160 0 20 chr6 17904364 17904414 -171375140 + (TGG)n Simple_repeat Simple_repeat 1 49 0 745 311 36 45 chr6 17904933 17905354 -171374200 - L1ME3A LINE L1 -226 5944 5528 246 154 339 0 chr6 17905827 17905892 -171373662 + L1MB7 LINE L1 6091 6177 -7 1450 172 43 36 chr6 17905904 17906087 -171373467 + L1MB3 LINE L1 5871 6058 -125 2258 125 0 0 chr6 17906087 17906391 -171373163 + AluSq SINE Alu 1 304 -9 1450 172 43 36 chr6 17906391 17906510 -171373044 + L1MB3 LINE L1 6058 6175 -8 350 294 0 0 chr6 17907588 17907673 -171371881 - L2 LINE L2 0 3272 3188 406 323 24 8 chr6 17908055 17908179 -171371375 + L2 LINE L2 3134 3259 -13 2138 112 0 31 chr6 17908293 17908614 -171370940 - AluSx SINE Alu -1 311 1 2023 194 18 26 chr6 17908663 17909054 -171370500 + MLT1B LTR MaLR 1 388 -2 303 251 150 70 chr6 17909111 17909298 -171370256 + MIR3 SINE MIR 3 204 -4 2312 102 0 0 chr6 17909465 17909769 -171369785 + AluSg SINE Alu 1 304 -6 6061 96 8 13 chr6 17910481 17911337 -171368217 - L1PA14 LINE L1 -3 6158 5307 1817 109 4 16 chr6 17911363 17911620 -171367934 - AluSg SINE Alu -29 281 28 21 0 0 0 chr6 17911630 17911651 -171367903 + AT_rich Low_complexity Low_complexity 1 21 0 2363 88 0 3 chr6 17911652 17911949 -171367605 + AluSq SINE Alu 1 296 -17 406 300 198 12 chr6 17913068 17913283 -171366271 - MIR SINE MIR 0 262 12 266 306 50 78 chr6 17913913 17914132 -171365422 + MIR SINE MIR 12 224 -38 1867 116 83 7 chr6 17914767 17915043 -171364511 + AluSp SINE Alu 14 310 -3 192 40 0 0 chr6 17915312 17915337 -171364217 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 455 188 69 10 chr6 17916325 17916426 -171363128 + MIR SINE MIR 82 188 -74 1467 174 105 22 chr6 17916432 17916794 -171362760 - L1MB7 LINE L1 0 6184 5793 3504 102 16 8 chr6 17916988 17917488 -171362066 + MER1A DNA MER1_type 1 529 0 443 267 34 48 chr6 17918185 17918331 -171361223 - MIR3 SINE MIR -15 193 50 5635 49 1 0 chr6 17918874 17919560 -171359994 + L1PA5 LINE L1 5501 6154 0 482 207 10 173 chr6 17920081 17920181 -171359373 - MER69A DNA AcHobo -2349 177 127 1829 163 3 7 chr6 17920181 17920487 -171359067 + AluJb SINE Alu 1 305 -7 482 207 10 173 chr6 17920487 17920594 -171358960 - MER69A DNA AcHobo -2399 127 4 258 231 0 0 chr6 17920946 17920998 -171358556 + LTR30 LTR ERV1 1 52 -670 1320 126 112 5 chr6 17920998 17921212 -171358342 + LTR12 LTR ERV1 53 289 -425 323 174 35 23 chr6 17921212 17921298 -171358256 + LTR30 LTR ERV1 556 642 -80 732 129 0 0 chr6 17921300 17921401 -171358153 + LTR12 LTR ERV1 614 714 0 1772 91 4 4 chr6 17921401 17921632 -171357922 - AluSp SINE Alu -82 231 1 14958 118 42 21 chr6 17922029 17922420 -171357134 + Tigger1 DNA MER2_type 1 382 -2036 2426 86 0 0 chr6 17922420 17922723 -171356831 + AluY SINE Alu 1 303 -8 14958 118 42 21 chr6 17922723 17924124 -171355430 + Tigger1 DNA MER2_type 382 1860 -558 2072 93 3 31 chr6 17924124 17924442 -171355112 + AluY SINE Alu 1 310 0 14958 118 42 21 chr6 17924442 17925005 -171354549 + Tigger1 DNA MER2_type 1860 2409 -9 1980 97 68 4 chr6 17925008 17925287 -171354267 + AluSq SINE Alu 3 299 -14 2082 134 7 3 chr6 17925365 17925672 -171353882 + AluJb SINE Alu 1 308 -4 1647 117 50 39 chr6 17926011 17926260 -171353294 + L1MB4 LINE L1 5884 6138 -42 2336 73 24 0 chr6 17926260 17926549 -171353005 + AluSc SINE Alu 1 296 -13 1647 117 50 39 chr6 17926549 17926580 -171352974 + L1MB4 LINE L1 6138 6167 -13 216 0 0 0 chr6 17926582 17926606 -171352948 + (TG)n Simple_repeat Simple_repeat 2 25 0 27 29 0 0 chr6 17926618 17926652 -171352902 + AT_rich Low_complexity Low_complexity 1 34 0 1372 208 10 20 chr6 17927956 17928254 -171351300 + AluJo SINE Alu 1 295 -17 186 263 53 0 chr6 17928312 17928369 -171351185 + L2 LINE L2 2715 2774 -540 251 284 156 0 chr6 17928384 17928493 -171351061 + MIR SINE MIR 124 249 -13 222 319 83 58 chr6 17928534 17928810 -171350744 + L2 LINE L2 2825 3107 -165 219 36 0 0 chr6 17929003 17929031 -171350523 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2183 104 3 0 chr6 17929033 17929320 -171350234 - AluSg SINE Alu -22 288 1 567 291 27 0 chr6 17929324 17929472 -171350082 - MIR SINE MIR -110 152 1 1282 160 88 0 chr6 17929566 17929804 -171349750 + L1MA9 LINE L1 6054 6312 0 2192 102 3 0 chr6 17929812 17930119 -171349435 + AluSq SINE Alu 1 308 0 185 154 26 0 chr6 17930961 17931000 -171348554 + (TA)n Simple_repeat Simple_repeat 1 40 0 676 250 103 0 chr6 17931959 17932115 -171347439 - AluJb SINE Alu -4 308 137 2424 152 0 46 chr6 17932601 17933016 -171346538 + MER57A LTR ERV1 8 403 0 200 383 25 0 chr6 17933130 17933250 -171346304 - L2 LINE L2 -642 2672 2550 2221 108 0 3 chr6 17933281 17933576 -171345978 + AluSg SINE Alu 1 294 -16 376 234 126 51 chr6 17935959 17936134 -171343420 - MER5A DNA MER1_type -1 188 1 2244 116 7 3 chr6 17936282 17936585 -171342969 + AluSc SINE Alu 1 304 -5 1194 137 0 6 chr6 17937257 17937432 -171342122 + AluJo SINE Alu 1 174 -138 309 136 0 68 chr6 17937651 17937752 -171341802 + AluJ/FRAM SINE Alu 228 324 0 2366 96 0 7 chr6 17937826 17938129 -171341425 + AluSc SINE Alu 1 301 -8 2250 145 8 39 chr6 17938722 17939000 -171340554 - MER7A DNA MER2_type -2693 345 81 2514 62 0 13 chr6 17939000 17939305 -171340249 - AluY SINE Alu -10 301 1 2250 145 8 39 chr6 17939305 17939384 -171340170 - MER7A DNA MER2_type -2957 81 1 197 341 93 31 chr6 17941540 17941669 -171337885 - MIR3 SINE MIR -25 183 47 2335 115 0 0 chr6 17942851 17943155 -171336399 - AluSg SINE Alu -6 304 1 249 255 117 0 chr6 17943157 17943251 -171336303 + L1 LINE L1 4887 4991 -1155 250 219 14 14 chr6 17943251 17943324 -171336230 + (TA)n Simple_repeat Simple_repeat 1 73 0 539 294 55 12 chr6 17943358 17943521 -171336033 - L2 LINE L2 -503 2811 2642 1329 242 88 53 chr6 17943529 17944053 -171335501 + MLT1F LTR MaLR 1 542 0 504 301 38 0 chr6 17944095 17944228 -171335326 - MIR SINE MIR -122 140 3 2370 100 0 3 chr6 17944351 17944652 -171334902 - AluSq SINE Alu -13 300 1 2318 90 13 0 chr6 17944988 17945287 -171334267 - AluSq SINE Alu -10 303 1 943 178 0 0 chr6 17945657 17945847 -171333707 - FRAM SINE Alu 0 190 1 263 73 24 0 chr6 17946749 17946790 -171332764 + Charlie1 DNA MER1_type 2687 2728 -33 2646 169 79 16 chr6 17946793 17947428 -171332126 - Charlie1 DNA MER1_type -32 2729 2055 723 195 69 25 chr6 17947405 17947564 -171331990 - Charlie1 DNA MER1_type -2555 206 41 * 3893 135 20 0 chr6 17947871 17948516 -171331038 - L1MA4 LINE L1 -1 6299 5642 1977 146 17 0 chr6 17948521 17948822 -171330732 - AluSc SINE Alu -3 306 1 288 346 15 15 chr6 17949088 17949218 -171330336 - MIR SINE MIR -49 213 84 1607 40 30 0 chr6 17950218 17950418 -171329136 - L1PA4 LINE L1 0 6155 5950 473 119 48 24 chr6 17950787 17950923 -171328631 - FLAM_A SINE Alu 0 142 35 1103 91 0 0 chr6 17951690 17951844 -171327710 - L1PA8 LINE L1 0 6172 6019 184 362 21 0 chr6 17953259 17953306 -171326248 - L2 LINE L2 -98 3174 3127 198 103 0 0 chr6 17953314 17953343 -171326211 + (T)n Simple_repeat Simple_repeat 1 29 0 191 138 0 0 chr6 17953532 17953561 -171325993 - L2 LINE L2 -16 3297 3269 350 269 71 43 chr6 17953999 17954140 -171325414 + MER5A DNA MER1_type 1 145 -44 1758 198 68 60 chr6 17954448 17954756 -171324798 + MLT1D LTR MaLR 1 316 -189 1931 131 22 26 chr6 17954756 17955069 -171324485 + AluSx SINE Alu 1 312 0 1758 198 68 60 chr6 17955069 17955261 -171324293 + MLT1D LTR MaLR 316 505 0 460 171 0 34 chr6 17955549 17955637 -171323917 - MER20 DNA MER1_type 0 219 135 207 0 0 0 chr6 17955667 17955690 -171323864 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 769 189 0 0 chr6 17955702 17955834 -171323720 - FRAM SINE Alu -44 132 1 758 153 13 33 chr6 17955836 17955986 -171323568 - MER20 DNA MER1_type -72 147 1 2256 83 3 52 chr6 17956351 17956675 -171322879 - AluSg SINE Alu -2 308 1 2163 125 0 25 chr6 17957617 17957936 -171321618 + AluSx SINE Alu 1 311 -1 314 184 276 0 chr6 17958517 17958615 -171320939 - L2 LINE L2 -21 3292 3168 201 371 121 17 chr6 17959070 17959186 -171320368 - L2 LINE L2 -24 3248 3121 2314 90 3 3 chr6 17960772 17961072 -171318482 + AluSq SINE Alu 1 300 -13 1122 143 0 0 chr6 17961089 17961431 -171318123 + (TGGA)n Simple_repeat Simple_repeat 1 342 0 243 262 16 0 chr6 17961438 17961499 -171318055 + GA-rich Low_complexity Low_complexity 3 64 0 26 50 0 0 chr6 17961957 17961997 -171317557 + AT_rich Low_complexity Low_complexity 1 40 0 2375 92 0 0 chr6 17964222 17964515 -171315039 - AluSx SINE Alu -19 293 1 271 78 7 0 chr6 17966490 17966546 -171313008 - Alu SINE Alu -28 274 240 331 252 209 0 chr6 17966561 17966676 -171312878 - MIR3 SINE MIR -46 162 24 306 125 0 0 chr6 17967039 17967087 -171312467 + (CA)n Simple_repeat Simple_repeat 2 49 0 192 200 22 22 chr6 17968819 17968864 -171310690 - L2 LINE L2 -11 3261 3217 342 0 0 0 chr6 17969676 17969714 -171309840 + (CA)n Simple_repeat Simple_repeat 2 39 0 338 245 14 14 chr6 17970948 17971091 -171308463 + (TG)n Simple_repeat Simple_repeat 2 144 0 32 0 0 0 chr6 17971299 17971331 -171308223 + AT_rich Low_complexity Low_complexity 1 32 0 1007 169 12 0 chr6 17971339 17971511 -171308043 - AluJo SINE Alu -19 293 120 640 120 0 0 chr6 17971530 17971630 -171307924 - FLAM_C SINE Alu 0 143 44 1140 169 14 59 chr6 17971637 17971927 -171307627 - L1MA7 LINE L1 -3 6288 6012 486 212 159 0 chr6 17972111 17972224 -171307330 - FLAM_A SINE Alu -2 131 1 300 279 39 54 chr6 17972666 17972795 -171306759 - MIR3 SINE MIR -4 204 78 356 284 61 20 chr6 17973210 17973358 -171306196 + L2 LINE L2 3160 3313 0 870 192 106 10 chr6 17973782 17973980 -171305574 + MLT1A1 LTR MaLR 1 217 -148 2125 78 30 0 chr6 17974000 17974270 -171305284 + AluSx SINE Alu 1 278 -34 21 0 0 0 chr6 17974626 17974647 -171304907 + AT_rich Low_complexity Low_complexity 1 21 0 384 253 165 29 chr6 17974722 17974892 -171304662 - MIR SINE MIR -38 224 32 671 183 82 105 chr6 17974989 17975208 -171304346 + MIR SINE MIR 5 218 -44 379 276 0 38 chr6 17975258 17975363 -171304191 + MIR SINE MIR 48 148 -114 1546 101 4 21 chr6 17976258 17976495 -171303059 - AluSc SINE Alu -1 308 76 736 301 30 33 chr6 17976679 17976981 -171302573 - L3 LINE CR1 -14 1563 1263 1096 168 20 45 chr6 17977780 17977982 -171301572 + AluJo SINE Alu 86 282 -30 258 32 0 0 chr6 17977997 17978028 -171301526 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr6 17980669 17980689 -171298865 + (A)n Simple_repeat Simple_repeat 1 20 0 425 351 46 6 chr6 17980724 17980898 -171298656 + MIR3 SINE MIR 19 199 -9 223 319 100 62 chr6 17983303 17983440 -171296114 + MIR3 SINE MIR 43 188 -20 10840 30 7 0 chr6 17983440 17985509 -171294045 + L1PA4 LINE L1 4077 6152 -3 223 319 100 62 chr6 17985509 17985531 -171294023 + MIR3 SINE MIR 188 208 0 334 100 0 0 chr6 17985706 17985756 -171293798 + L1MB3 LINE L1 6093 6142 -41 2155 116 3 0 chr6 17985756 17986049 -171293505 + AluSq SINE Alu 1 294 -19 261 321 28 0 chr6 17986989 17987095 -171292459 + MIR3 SINE MIR 96 204 -4 282 360 0 9 chr6 17987668 17987782 -171291772 + L2 LINE L2 3137 3249 -23 267 303 50 81 chr6 17987802 17988099 -171291455 + L2 LINE L2 2596 2883 -431 284 340 50 10 chr6 17988304 17988404 -171291150 + L2 LINE L2 3209 3312 -1 202 194 0 0 chr6 17988409 17988445 -171291109 + GA-rich Low_complexity Low_complexity 1 36 0 2169 123 3 7 chr6 17988461 17988770 -171290784 + AluSg SINE Alu 1 308 -2 220 275 213 0 chr6 17988774 17988854 -171290700 - MIR SINE MIR -77 131 35 182 364 114 0 chr6 17988979 17989067 -171290487 + L2 LINE L2 2260 2357 -957 303 271 175 22 chr6 17989362 17989591 -171289963 + L2 LINE L2 2451 2714 -600 195 42 0 0 chr6 17989919 17989943 -171289611 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 530 343 70 18 chr6 17989978 17990377 -171289177 + L1M4 LINE L1 2121 2540 -3606 357 271 60 0 chr6 17990588 17990721 -171288833 + L1ME2 LINE L1 2329 2469 -3677 2295 125 0 0 chr6 17990767 17991078 -171288476 + AluSx SINE Alu 1 311 -1 719 228 74 43 chr6 17991069 17991463 -171288091 + L1ME2 LINE L1 3106 3511 -2635 447 170 33 68 chr6 17991450 17991595 -171287959 + L1MD2 LINE L1 6035 6160 -6 * 1474 246 50 47 chr6 17991578 17992179 -171287375 + L1ME2 LINE L1 3479 4081 -2065 723 268 103 29 chr6 17992191 17992571 -171286983 + L1ME2 LINE L1 4346 4753 -1393 23 55 0 18 chr6 17992576 17992610 -171286944 + AT_rich Low_complexity Low_complexity 1 35 -19 2064 143 0 0 chr6 17992610 17992911 -171286643 - AluJo SINE Alu -11 301 1 23 55 0 18 chr6 17992911 17992931 -171286623 + AT_rich Low_complexity Low_complexity 35 54 0 779 180 50 0 chr6 17992931 17993070 -171286484 - FRAM SINE Alu -30 146 1 1216 241 127 6 chr6 17993084 17993556 -171285998 + L1ME2 LINE L1 4757 5285 -861 228 182 0 0 chr6 17993556 17993600 -171285954 + (TA)n Simple_repeat Simple_repeat 1 44 0 1423 169 12 12 chr6 17993651 17993899 -171285655 - AluJb SINE Alu -22 290 43 1446 216 29 10 chr6 17993919 17994229 -171285325 + L1ME2 LINE L1 5825 6140 -24 871 194 0 6 chr6 17995697 17995857 -171283697 + MER5A DNA MER1_type 9 167 -22 1988 131 27 0 chr6 17995899 17996197 -171283357 + AluSx SINE Alu 1 306 -6 392 0 21 0 chr6 17996198 17996246 -171283308 + (CA)n Simple_repeat Simple_repeat 1 49 0 32 0 0 0 chr6 17996800 17996832 -171282722 + AT_rich Low_complexity Low_complexity 1 32 0 389 270 63 59 chr6 17997227 17997417 -171282137 - MIR SINE MIR -19 243 50 276 281 177 0 chr6 17998201 17998297 -171281257 + L2 LINE L2 3160 3272 0 429 275 25 17 chr6 17998454 17998574 -171280980 + MIR SINE MIR 32 152 -56 974 221 37 28 chr6 17998645 17998862 -171280692 - MER58A DNA MER1_type -5 219 1 283 235 173 12 chr6 18001037 18001118 -171278436 + L2 LINE L2 3214 3307 -6 1104 206 76 25 chr6 18001720 18002036 -171277518 + MLT1C LTR MaLR 134 465 -2 603 261 79 120 chr6 18002095 18002513 -171277041 + L2 LINE L2 2913 3313 0 194 273 23 0 chr6 18002768 18002812 -171276742 + MIR SINE MIR 77 121 -87 192 294 92 28 chr6 18002882 18002991 -171276563 - L2 LINE L2 -7 3306 3191 1846 165 0 10 chr6 18003363 18003666 -171275888 + AluJo SINE Alu 1 300 -12 25 0 0 0 chr6 18005318 18005343 -171274211 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr6 18005707 18005731 -171273823 + AT_rich Low_complexity Low_complexity 1 24 0 2263 100 3 3 chr6 18008118 18008417 -171271137 + AluSx SINE Alu 1 299 -13 2050 103 41 17 chr6 18008602 18008894 -171270660 + AluSq SINE Alu 1 299 -14 342 291 58 53 chr6 18009991 18010180 -171269374 - MIR3 SINE MIR -14 194 5 460 244 207 0 chr6 18010659 18010794 -171268760 - MIR SINE MIR -48 214 52 186 296 136 25 chr6 18011170 18011251 -171268303 - MIR3 SINE MIR -117 91 2 294 132 38 38 chr6 18011884 18011937 -171267617 + MIR SINE MIR 205 257 -5 1931 136 14 14 chr6 18012020 18012314 -171267240 + AluSx SINE Alu 1 294 -18 267 114 0 0 chr6 18012503 18012547 -171267007 + (TA)n Simple_repeat Simple_repeat 1 44 0 211 366 70 21 chr6 18012781 18012923 -171266631 - MIR3 SINE MIR -56 152 4 345 47 0 0 chr6 18013459 18013502 -171266052 + (T)n Simple_repeat Simple_repeat 1 43 0 2176 130 0 0 chr6 18014307 18014608 -171264946 + AluSx SINE Alu 1 301 -11 1757 159 7 17 chr6 18015297 18015598 -171263956 + AluJo SINE Alu 1 298 -14 1962 119 69 0 chr6 18015600 18015877 -171263677 + AluSp SINE Alu 1 296 -17 836 134 0 19 chr6 18015883 18016121 -171263433 + AluSx SINE Alu 2 289 -21 214 277 31 0 chr6 18016411 18016476 -171263078 + GA-rich Low_complexity Low_complexity 3 69 0 1884 139 51 0 chr6 18016536 18016810 -171262744 - AluSx SINE Alu -24 288 1 210 176 14 40 chr6 18016960 18017034 -171262520 + T-rich Low_complexity Low_complexity 2 73 0 730 225 182 10 chr6 18017092 18017301 -171262253 + MIR SINE MIR 2 246 -16 630 110 0 0 chr6 18017773 18017855 -171261699 + AluSg/x SINE Alu 217 298 -14 21 0 0 0 chr6 18021184 18021205 -171258349 + AT_rich Low_complexity Low_complexity 1 21 0 875 158 0 0 chr6 18022715 18022848 -171256706 - FLAM_C SINE Alu 0 133 1 210 325 65 32 chr6 18023066 18023189 -171256365 + MIR SINE MIR 21 147 -61 318 360 64 37 chr6 18025655 18026131 -171253423 - L2 LINE L2 -162 3110 2624 332 292 168 30 chr6 18027034 18027236 -171252318 + L1ME LINE L1 5354 5583 -776 357 293 64 21 chr6 18027290 18027430 -171252124 + L1ME LINE L1 5677 5822 -299 327 25 0 0 chr6 18027949 18027989 -171251565 + (TG)n Simple_repeat Simple_repeat 2 41 0 531 267 39 37 chr6 18028041 18028228 -171251326 - MIR SINE MIR -62 146 3 528 284 53 12 chr6 18028877 18029046 -171250508 - MIR3 SINE MIR -3 205 30 185 250 0 0 chr6 18030390 18030430 -171249124 + L2 LINE L2 3179 3218 -95 746 236 5 1 chr6 18030436 18030608 -171248946 + MIR SINE MIR 24 198 -62 213 313 42 21 chr6 18031826 18031922 -171247632 + L2 LINE L2 2205 2302 -1012 2312 122 0 0 chr6 18032968 18033280 -171246274 - AluSx SINE Alu 0 312 1 603 306 54 27 chr6 18033861 18034083 -171245471 - MIR SINE MIR -28 234 7 310 290 149 26 chr6 18034327 18034482 -171245072 - MER5B DNA MER1_type 0 189 2 288 120 0 0 chr6 18035997 18036047 -171243507 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 21 0 0 0 chr6 18036223 18036244 -171243310 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 18038152 18038185 -171241369 + AT_rich Low_complexity Low_complexity 1 33 0 252 0 0 0 chr6 18041546 18041574 -171237980 + (T)n Simple_repeat Simple_repeat 1 28 0 183 42 0 0 chr6 18041714 18041738 -171237816 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 228 246 0 0 chr6 18041994 18042051 -171237503 + (CA)n Simple_repeat Simple_repeat 1 57 0 388 291 163 90 chr6 18042117 18043052 -171236502 + L1M2 LINE L1 308 1310 -5539 309 51 0 0 chr6 18043066 18043105 -171236449 + (CA)n Simple_repeat Simple_repeat 2 40 0 335 105 18 0 chr6 18043491 18043548 -171236006 + (TCC)n Simple_repeat Simple_repeat 1 58 0 192 149 0 0 chr6 18043563 18043610 -171235944 + (CTCG)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chr6 18043750 18043774 -171235780 + GC_rich Low_complexity Low_complexity 1 24 0 406 310 168 0 chr6 18046366 18046521 -171233033 + MER5A DNA MER1_type 9 189 0 24 32 0 0 chr6 18047592 18047623 -171231931 + AT_rich Low_complexity Low_complexity 1 31 0 641 141 23 174 chr6 18048611 18048898 -171230656 + Charlie5 DNA MER1_type 23 352 -2233 1752 138 62 17 chr6 18048898 18049188 -171230366 - AluJb SINE Alu -9 303 1 641 141 23 174 chr6 18049188 18049277 -171230277 + Charlie5 DNA MER1_type 352 2585 0 1015 16 132 0 chr6 18050921 18051042 -171228512 - MER85 DNA T2_type -2 137 1 2162 192 44 26 chr6 18052367 18052826 -171226728 + MLT1C LTR MaLR 1 467 0 1588 231 121 19 chr6 18053495 18054319 -171225235 + L2 LINE L2 2403 3313 0 322 298 38 53 chr6 18054518 18054649 -171224905 - MIR SINE MIR -54 208 80 189 171 0 0 chr6 18055331 18055366 -171224188 + A-rich Low_complexity Low_complexity 1 35 0 567 254 45 57 chr6 18056199 18056376 -171223178 - MIR3 SINE MIR -19 189 15 1823 162 0 10 chr6 18057141 18057449 -171222105 - AluJo SINE Alu -7 305 1 676 48 0 0 chr6 18057556 18057639 -171221915 - L1P LINE L1 -2342 3804 3722 3271 24 27 0 chr6 18057639 18058006 -171221548 + L1PA4 LINE L1 5773 6151 -4 762 237 56 56 chr6 18058996 18059283 -171220271 + L1ME3A LINE L1 5817 6103 -67 2126 112 11 0 chr6 18059316 18059602 -171219952 + AluSx SINE Alu 1 289 -23 1045 254 116 19 chr6 18059696 18060034 -171219520 + L1ME3A LINE L1 5510 5897 -273 2200 130 0 0 chr6 18060034 18060341 -171219213 + AluSq SINE Alu 1 307 -6 1045 254 116 19 chr6 18060341 18060415 -171219139 + L1ME3A LINE L1 5897 5962 -208 1794 160 0 11 chr6 18060450 18060731 -171218823 - AluJo SINE Alu -34 278 1 378 237 23 53 chr6 18060732 18060863 -171218691 + L1ME3A LINE L1 6044 6170 0 21 0 0 0 chr6 18060973 18060994 -171218560 + AT_rich Low_complexity Low_complexity 1 21 0 273 248 174 9 chr6 18061726 18061835 -171217719 + L2 LINE L2 3186 3312 -1 1367 191 67 24 chr6 18061894 18062057 -171217497 - AluJo SINE Alu -1 311 157 213 39 0 0 chr6 18062057 18062083 -171217471 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2131 103 0 7 chr6 18062085 18062367 -171217187 - AluSx SINE Alu -32 280 1 1367 191 67 24 chr6 18062367 18062498 -171217056 - AluJo SINE Alu -155 157 1 250 306 50 50 chr6 18062677 18062843 -171216711 - MIR SINE MIR -49 213 51 504 217 167 0 chr6 18063358 18063496 -171216058 + MER5A DNA MER1_type 28 188 -1 237 139 0 0 chr6 18065137 18065180 -171214374 + (CA)n Simple_repeat Simple_repeat 2 44 0 1221 218 12 112 chr6 18066025 18066437 -171213117 + MLT1B LTR MaLR 6 376 -14 838 211 6 6 chr6 18066451 18066612 -171212942 + MLT1C LTR MaLR 307 467 0 5997 80 0 0 chr6 18066760 18067527 -171212027 + L1PA14 LINE L1 5395 6161 0 1606 194 3 3 chr6 18068280 18068594 -171210960 + AluJb SINE Alu 1 314 0 262 320 29 19 chr6 18068614 18068717 -171210837 - L2 LINE L2 -179 3093 2990 381 370 46 0 chr6 18068890 18069063 -171210491 - L2 LINE L2 -541 2773 2593 1706 180 31 63 chr6 18069105 18069488 -171210066 + MLT1A2 LTR MaLR 4 374 0 490 326 144 13 chr6 18069623 18070159 -171209395 - L2 LINE L2 -1216 2098 1493 3045 132 7 2 chr6 18070168 18070594 -171208960 - MSTA LTR MaLR 0 428 1 9793 150 39 6 chr6 18070600 18072192 -171207362 - MSTA-int LTR MaLR -7 1644 1 3001 124 19 0 chr6 18072192 18072612 -171206942 - MSTA LTR MaLR 0 428 1 441 345 120 34 chr6 18072615 18073290 -171206264 - L2 LINE L2 -1852 1462 730 407 187 44 0 chr6 18073311 18073402 -171206152 + L1MD1 LINE L1 21 115 -6425 278 152 0 13 chr6 18073408 18073487 -171206067 + (TA)n Simple_repeat Simple_repeat 2 79 0 2189 252 62 20 chr6 18073487 18073646 -171205908 + L1MD1 LINE L1 111 262 -6278 216 0 0 0 chr6 18073646 18073670 -171205884 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2189 252 62 20 chr6 18073670 18074210 -171205344 + L1MD1 LINE L1 262 1010 -5530 1412 170 0 5 chr6 18074281 18074499 -171205055 - Tigger3(Golem) DNA MER2_type -2812 217 1 330 104 0 0 chr6 18074499 18074547 -171205007 + L1MA9 LINE L1 6265 6312 0 1334 214 76 3 chr6 18074589 18074892 -171204662 - MLT1C LTR MaLR -90 377 53 6123 198 98 17 chr6 18074899 18076538 -171203016 + L1MD1 LINE L1 1095 2601 -3939 2230 125 0 0 chr6 18076538 18076842 -171202712 + AluSx SINE Alu 1 304 -8 6123 198 98 17 chr6 18076842 18078149 -171201405 + L1MD1 LINE L1 2601 4267 -2273 5164 180 47 20 chr6 18078152 18078601 -171200953 + L1MD1 LINE L1 5211 5646 -990 1995 118 66 0 chr6 18078601 18078890 -171200664 + AluSg SINE Alu 1 308 -2 5164 180 47 20 chr6 18078890 18079811 -171199743 + L1MD1 LINE L1 5646 6636 0 286 264 57 43 chr6 18080655 18080703 -171198851 + MIR3 SINE MIR 64 110 -98 2494 72 0 3 chr6 18080703 18081008 -171198546 - AluSg SINE Alu -6 304 1 286 264 57 43 chr6 18081008 18081099 -171198455 + MIR3 SINE MIR 110 205 -3 231 170 0 0 chr6 18081336 18081383 -171198171 + T-rich Low_complexity Low_complexity 3 49 0 180 0 0 0 chr6 18084077 18084097 -171195457 + (TC)n Simple_repeat Simple_repeat 2 21 0 196 336 59 8 chr6 18086491 18086610 -171192944 + L2 LINE L2 2933 3057 -215 624 289 31 21 chr6 18086845 18087085 -171192469 - MIR SINE MIR -6 256 7 185 165 215 89 chr6 18087085 18087164 -171192390 - MER5B DNA MER1_type -3 175 87 221 305 137 0 chr6 18087171 18087266 -171192288 + L2 LINE L2 3199 3306 -7 606 245 5 58 chr6 18087291 18087479 -171192075 - MER5B DNA MER1_type 0 178 1 398 217 0 24 chr6 18087479 18087562 -171191992 - MER5B DNA MER1_type -97 81 1 738 246 60 32 chr6 18088392 18088612 -171190942 - MIR SINE MIR 0 262 38 227 358 77 57 chr6 18089055 18089497 -171190057 + L2 LINE L2 2851 3301 -12 1896 113 3 48 chr6 18089511 18089866 -171189688 - AluSx SINE Alu 0 346 5 269 164 16 33 chr6 18089975 18090036 -171189518 + LTR33 LTR ERVL 462 521 0 1492 236 33 28 chr6 18090646 18091069 -171188485 - MLT1C LTR MaLR -42 425 1 2365 195 32 24 chr6 18091651 18092300 -171187254 - L1MCa LINE L1 -4601 2144 1310 2223 183 47 14 chr6 18092304 18092791 -171186763 - L1MCa LINE L1 -4849 1196 694 285 276 11 23 chr6 18092758 18092845 -171186709 - L1MCa LINE L1 -6320 244 159 * 306 259 159 41 chr6 18092863 18093083 -171186471 - L1ME4a LINE L1 -29 6092 5847 755 262 28 33 chr6 18093183 18093397 -171186157 + MIR SINE MIR 6 218 -44 344 357 89 24 chr6 18094219 18094510 -171185044 + L2 LINE L2 2429 2738 -576 3486 114 0 6 chr6 18094852 18095344 -171184210 + LOR1a LTR ERV1 9 497 0 192 304 196 9 chr6 18095344 18095456 -171184098 + L2 LINE L2 3137 3269 -3 361 281 10 10 chr6 18095705 18095801 -171183753 - MIR3 SINE MIR -24 184 89 212 130 0 56 chr6 18095960 18096014 -171183540 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 562 200 130 0 chr6 18096520 18096620 -171182934 - AluJo/FRAM SINE Alu -63 249 137 1798 170 20 0 chr6 18096621 18096915 -171182639 - AluJo SINE Alu -8 304 5 26 30 0 0 chr6 18097345 18097378 -171182176 + AT_rich Low_complexity Low_complexity 1 33 0 2026 143 0 0 chr6 18097382 18097662 -171181892 - AluSx SINE Alu -30 282 3 2446 57 23 10 chr6 18097684 18097985 -171181569 - AluY SINE Alu -6 305 1 458 49 0 33 chr6 18098741 18098796 -171180758 + AluY SINE Alu 2 55 -258 1483 84 0 0 chr6 18098796 18098975 -171180579 + AluSg/x SINE Alu 98 276 -36 207 0 0 0 chr6 18098982 18099005 -171180549 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 294 29 0 0 chr6 18099239 18099274 -171180280 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 27 0 0 0 chr6 18099681 18099708 -171179846 + AT_rich Low_complexity Low_complexity 1 27 0 23 78 0 0 chr6 18100245 18100296 -171179258 + AT_rich Low_complexity Low_complexity 1 51 0 188 302 19 0 chr6 18100431 18100484 -171179070 - MIR SINE MIR -14 248 195 336 121 3 0 chr6 18100491 18100546 -171179008 - AluJ/FLAM SINE Alu -243 59 14 2167 106 17 0 chr6 18100611 18100904 -171178650 + AluSg SINE Alu 1 298 -12 657 86 108 0 chr6 18102109 18102202 -171177352 + AluJ SINE Alu 23 125 -187 5303 70 44 3 chr6 18102204 18102880 -171176674 - L1PA8 LINE L1 0 6172 5469 2005 93 0 0 chr6 18102882 18103160 -171176394 - L1PA8 LINE L1 -771 5375 5098 908 139 85 12 chr6 18103236 18103401 -171176153 + AluJ SINE Alu 122 298 -14 190 266 38 38 chr6 18103658 18103737 -171175817 - L2 LINE L2 0 3272 3194 195 182 18 73 chr6 18104738 18104793 -171174761 - L3 LINE CR1 -5 1572 1521 246 342 26 17 chr6 18104954 18105071 -171174483 - MIR SINE MIR -109 153 36 551 244 101 12 chr6 18105435 18105603 -171173951 - MIR SINE MIR 0 262 80 331 319 43 0 chr6 18106061 18106155 -171173399 - L2 LINE L2 -25 3247 3150 1241 172 89 0 chr6 18106159 18106362 -171173192 + MER58A DNA MER1_type 4 224 0 766 261 111 4 chr6 18106471 18106705 -171172849 - MIR SINE MIR -2 260 2 2194 106 7 3 chr6 18108497 18108790 -171170764 + AluSc SINE Alu 1 294 -15 327 172 17 0 chr6 18109111 18109169 -171170385 + MER91B DNA MER1_type 2 60 -130 16067 123 36 1 chr6 18109879 18110772 -171168782 - Tigger1 DNA MER2_type -1 2417 1557 1753 179 0 13 chr6 18110772 18111074 -171168480 - AluJo SINE Alu -14 298 1 16067 123 36 1 chr6 18111074 18112512 -171167042 - Tigger1 DNA MER2_type -861 1557 3 243 259 0 0 chr6 18112618 18112672 -171166882 + T-rich Low_complexity Low_complexity 1 54 0 227 229 13 106 chr6 18112700 18112865 -171166689 - MIR3 SINE MIR -23 185 65 221 167 24 0 chr6 18112865 18112907 -171166647 + MER5B DNA MER1_type 1 43 -135 302 309 49 37 chr6 18112935 18113097 -171166457 + MER5A DNA MER1_type 8 171 -18 * 713 159 37 37 chr6 18112965 18113128 -171166426 - MER5A DNA MER1_type -24 165 3 2406 90 0 0 chr6 18113462 18113762 -171165792 - AluY SINE Alu -11 300 1 317 349 112 0 chr6 18113987 18114139 -171165415 - L2 LINE L2 -1 3271 3103 297 257 59 22 chr6 18115736 18115872 -171163682 + L3b LINE CR1 1122 1262 -321 1193 206 19 43 chr6 18115887 18115909 -171163645 - MER33 DNA MER1_type -2268 317 296 2346 103 0 0 chr6 18115909 18116209 -171163345 + AluSq SINE Alu 1 300 -13 1193 206 19 43 chr6 18116209 18116511 -171163043 - MER33 DNA MER1_type -2289 296 1 512 217 0 9 chr6 18116633 18116739 -171162815 - MER5B DNA MER1_type -73 105 1 193 209 0 0 chr6 18116745 18116788 -171162766 + L3b LINE CR1 1371 1413 -170 238 213 33 16 chr6 18116828 18116889 -171162665 - MIR3 SINE MIR -21 187 126 219 36 0 0 chr6 18116976 18117004 -171162550 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2155 98 0 18 chr6 18117004 18117290 -171162264 - AluSq SINE Alu -32 281 1 2321 49 0 11 chr6 18117630 18117942 -171161612 - AluY SINE Alu 0 309 1 336 338 80 7 chr6 18120405 18120556 -171158998 + MIR SINE MIR 88 249 -13 234 306 0 0 chr6 18120773 18120822 -171158732 + L2 LINE L2 3186 3234 -38 479 209 39 23 chr6 18120881 18121010 -171158544 - MER69A DNA AcHobo -45 132 2 2198 90 30 13 chr6 18121288 18121588 -171157966 + AluSc SINE Alu 1 305 -4 1685 167 57 47 chr6 18121594 18121977 -171157577 - MLT1B LTR MaLR 0 390 4 264 309 21 0 chr6 18122215 18122309 -171157245 + CT-rich Low_complexity Low_complexity 1 96 0 300 300 12 0 chr6 18122564 18122644 -171156910 + MIR3 SINE MIR 112 192 -16 203 382 53 59 chr6 18123121 18123273 -171156281 - L2 LINE L2 -18 3254 3104 1150 273 68 32 chr6 18124498 18124967 -171154587 - L1ME4a LINE L1 -21 6100 5615 2427 65 3 3 chr6 18125766 18126057 -171153497 - AluSp SINE Alu -22 291 1 183 245 38 19 chr6 18126106 18126159 -171153395 - L2 LINE L2 -82 3190 3137 1003 184 163 0 chr6 18126384 18126629 -171152925 - Zaphod DNA AcHobo -13 4018 3734 246 222 122 0 chr6 18126734 18126824 -171152730 + L1ME4a LINE L1 6021 6121 0 196 340 0 39 chr6 18126979 18127082 -171152472 + L3 LINE CR1 100 198 -1379 343 318 97 9 chr6 18127208 18127436 -171152118 - MIR SINE MIR -12 250 2 21 0 0 0 chr6 18127955 18127976 -171151578 + AT_rich Low_complexity Low_complexity 1 21 0 1951 93 0 0 chr6 18128116 18128363 -171151191 + AluY SINE Alu 50 296 -15 505 150 0 0 chr6 18128765 18128845 -171150709 - MADE1 DNA Mariner 0 80 1 332 322 34 80 chr6 18130105 18130217 -171149337 - L2 LINE L2 -56 3216 3100 186 43 0 0 chr6 18130217 18130240 -171149314 + (CAA)n Simple_repeat Simple_repeat 2 24 0 332 322 34 80 chr6 18130240 18130589 -171148965 - L2 LINE L2 -172 3100 2688 420 322 99 25 chr6 18130759 18131001 -171148553 - MIR SINE MIR 0 262 3 208 100 20 20 chr6 18132747 18132797 -171146757 + (CAAAAA)n Simple_repeat Simple_repeat 4 53 0 368 305 120 73 chr6 18134110 18134369 -171145185 + L3 LINE CR1 241 511 -1066 413 276 269 15 chr6 18134405 18134673 -171144881 + L3 LINE CR1 1113 1448 -129 329 270 9 49 chr6 18135128 18135299 -171144255 - MIR SINE MIR -62 146 37 2344 105 3 0 chr6 18135843 18136147 -171143407 + AluSp SINE Alu 1 305 -8 23 78 0 0 chr6 18136175 18136226 -171143328 + AT_rich Low_complexity Low_complexity 1 51 0 336 224 112 9 chr6 18138536 18138643 -171140911 + MER103 DNA DNA 3 120 -46 199 265 20 0 chr6 18138727 18138776 -171140778 - MIR SINE MIR -80 128 79 258 81 0 0 chr6 18139939 18139976 -171139578 + (CA)n Simple_repeat Simple_repeat 1 37 0 657 196 6 18 chr6 18140167 18140335 -171139219 + GA-rich Low_complexity Low_complexity 3 168 0 3249 16 0 0 chr6 18142279 18142649 -171136905 - L1HS LINE L1 -1516 4630 4261 8010 18 0 0 chr6 18142649 18144149 -171135405 + L1HS LINE L1 4654 6153 -2 339 221 0 0 chr6 18144151 18144278 -171135276 + A-rich Low_complexity Low_complexity 1 127 0 199 326 0 0 chr6 18144448 18144494 -171135060 + MIR SINE MIR 36 81 -127 198 302 58 58 chr6 18144534 18144620 -171134934 - L3b LINE CR1 -30 1553 1468 345 244 12 0 chr6 18145683 18145765 -171133789 + MLT1L LTR MaLR 118 200 -415 404 239 26 9 chr6 18146062 18146175 -171133379 + MLT1L LTR MaLR 501 615 0 187 358 11 21 chr6 18146356 18146451 -171133103 + MIR SINE MIR 45 138 -70 205 310 113 0 chr6 18146527 18146598 -171132956 - L2 LINE L2 -36 3277 3199 553 291 141 10 chr6 18147346 18147552 -171132002 + MIR SINE MIR 20 252 -10 2601 55 0 3 chr6 18147701 18148011 -171131543 - AluY SINE Alu -2 309 1 2526 80 0 0 chr6 18149095 18149406 -171130148 + AluY SINE Alu 1 311 0 221 313 0 12 chr6 18149685 18149765 -171129789 + T-rich Low_complexity Low_complexity 4 82 0 1862 139 34 7 chr6 18149785 18150079 -171129475 + AluJb SINE Alu 3 304 -8 297 0 0 0 chr6 18150985 18151018 -171128536 + (TG)n Simple_repeat Simple_repeat 1 33 0 2199 130 0 0 chr6 18152078 18152379 -171127175 + AluSx SINE Alu 1 301 -11 462 305 117 20 chr6 18152502 18152751 -171126803 + L2 LINE L2 2808 3080 -233 348 180 250 10 chr6 18152956 18153056 -171126498 - MLT1J2 LTR MaLR -287 163 40 333 319 43 37 chr6 18153130 18153318 -171126236 + L2 LINE L2 3121 3309 -4 1932 132 0 0 chr6 18153359 18153632 -171125922 + AluSc SINE Alu 36 308 -1 252 0 0 0 chr6 18153651 18153679 -171125875 + (TG)n Simple_repeat Simple_repeat 2 29 0 242 299 0 0 chr6 18153680 18153747 -171125807 - L2 LINE L2 -301 2971 2905 21 0 0 0 chr6 18153875 18153896 -171125658 + AT_rich Low_complexity Low_complexity 1 21 0 1580 184 40 4 chr6 18154286 18154563 -171124991 - AluJo SINE Alu -25 287 1 194 374 48 0 chr6 18154712 18154795 -171124759 - L2 LINE L2 -48 3224 3138 231 293 73 55 chr6 18156034 18156090 -171123464 + MLT1I LTR MaLR 70 123 -286 1483 231 14 22 chr6 18156090 18156250 -171123304 - MLT1A1 LTR MaLR 0 365 205 2348 85 0 20 chr6 18156250 18156555 -171122999 - AluY SINE Alu -12 299 1 1483 231 14 22 chr6 18156555 18156762 -171122792 - MLT1A1 LTR MaLR -160 205 1 231 293 73 55 chr6 18156762 18156869 -171122685 + MLT1I LTR MaLR 123 236 -173 310 264 11 0 chr6 18156892 18156979 -171122575 + MLT1J1 LTR MaLR 345 432 -14 192 313 189 45 chr6 18157566 18157767 -171121787 + L2 LINE L2 2829 3058 -214 5379 200 44 23 chr6 18157819 18158763 -171120791 - L1MB8 LINE L1 -59 6399 5476 6352 96 12 6 chr6 18158763 18160683 -171118871 - L1PA14 LINE L1 0 6161 4233 5379 200 44 23 chr6 18160683 18161847 -171117707 - L1MB8 LINE L1 -982 5476 4252 6133 210 73 43 chr6 18161871 18162260 -171117294 - L1MB8 LINE L1 -3327 3099 2723 2410 101 0 22 chr6 18162260 18162577 -171116977 + AluY SINE Alu 1 310 -1 6133 210 73 43 chr6 18162577 18164663 -171114891 - L1MB8 LINE L1 -3703 2723 493 374 321 9 0 chr6 18215331 18215440 -171064114 + MER81 DNA DNA 5 114 0 4859 267 63 38 chr6 18215766 18216584 -171062970 + L1MEc LINE L1 118 914 -5482 2045 151 0 0 chr6 18216584 18216876 -171062678 + AluJb SINE Alu 1 292 -20 234 0 0 0 chr6 18216886 18216912 -171062642 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4859 267 63 38 chr6 18216912 18217131 -171062423 + L1MEc LINE L1 922 1134 -5262 1376 236 12 60 chr6 18217131 18217384 -171062170 - MSTD LTR MaLR 0 396 169 2073 122 0 3 chr6 18217384 18217672 -171061882 - AluSx SINE Alu -19 293 7 1376 236 12 60 chr6 18217672 18217834 -171061720 - MSTD LTR MaLR -227 169 1 4859 267 63 38 chr6 18217834 18218978 -171060576 + L1MEc LINE L1 1134 2367 -4029 999 275 37 62 chr6 18219337 18219820 -171059734 - L1ME LINE L1 -366 5873 5403 407 297 118 44 chr6 18219860 18219975 -171059579 - L1ME LINE L1 -818 5397 5292 2217 112 3 0 chr6 18219975 18220278 -171059276 - AluY SINE Alu -7 304 1 407 297 118 44 chr6 18220278 18220391 -171059163 - L1ME LINE L1 -923 5292 5152 607 226 0 0 chr6 18220424 18220539 -171059015 - FLAM_A SINE Alu -17 116 2 2150 120 3 3 chr6 18220633 18220933 -171058621 + AluSx SINE Alu 1 300 -12 909 263 98 63 chr6 18220935 18221852 -171057702 - L1ME LINE L1 -1114 5101 4153 375 290 79 46 chr6 18221867 18222002 -171057552 - L1ME LINE L1 -3999 2397 2268 2083 144 0 6 chr6 18222002 18222315 -171057239 - AluSx SINE Alu -1 311 1 375 290 79 46 chr6 18222315 18222659 -171056895 - L1ME LINE L1 -4128 2268 1902 226 333 12 24 chr6 18222854 18222938 -171056616 - L2 LINE L2 -679 2635 2553 33 0 0 0 chr6 18223445 18223478 -171056076 + AT_rich Low_complexity Low_complexity 1 33 0 244 272 92 34 chr6 18223522 18223593 -171055961 - HAL1 LINE L1 -116 2391 2326 2300 118 31 11 chr6 18223593 18223950 -171055604 - THE1B LTR MaLR 0 364 1 244 272 92 34 chr6 18223950 18225061 -171054493 - HAL1 LINE L1 -181 2326 1113 1733 153 0 21 chr6 18225372 18225654 -171053900 + AluJo SINE Alu 5 280 -32 468 0 0 0 chr6 18225657 18225709 -171053845 + (CA)n Simple_repeat Simple_repeat 2 53 0 333 279 0 0 chr6 18226820 18226888 -171052666 + L2 LINE L2 3201 3268 -4 227 270 235 9 chr6 18227053 18227168 -171052386 - L2 LINE L2 -9 3304 3164 606 269 81 54 chr6 18227389 18227724 -171051830 + LTR33 LTR ERVL 1 344 -177 1288 189 30 43 chr6 18227725 18228114 -171051440 + MLT2B1 LTR ERVL 2 369 -45 387 171 0 0 chr6 18228121 18228197 -171051357 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 474 207 80 20 chr6 18228197 18228347 -171051207 + LTR33 LTR ERVL 363 521 0 4046 122 20 9 chr6 18228633 18229272 -171050282 - Tigger3b DNA MER2_type 0 1232 587 3257 50 0 2 chr6 18229282 18229684 -171049870 - L1PA7 LINE L1 -453 5701 5301 3583 50 7 4 chr6 18229684 18230131 -171049423 + L1PA7 LINE L1 5693 6151 -3 2467 94 90 17 chr6 18230148 18230561 -171048993 - Tigger3b DNA MER2_type -643 588 146 638 155 0 0 chr6 18230566 18230669 -171048885 + AluSp/q SINE Alu 207 309 -4 1667 128 0 8 chr6 18231276 18231519 -171048035 + AluSx SINE Alu 40 280 -32 240 35 0 0 chr6 18231519 18231548 -171048006 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 349 261 29 7 chr6 18231560 18231698 -171047856 + L1ME3A LINE L1 5811 5951 -219 259 227 40 148 chr6 18231766 18231860 -171047694 + L1ME3A LINE L1 5965 6033 -137 2509 77 0 0 chr6 18231860 18232170 -171047384 - AluY SINE Alu -1 310 1 259 227 40 148 chr6 18232170 18232251 -171047303 + L1ME3A LINE L1 6033 6121 -49 747 69 17 9 chr6 18232385 18232501 -171047053 + (GAAA)n Simple_repeat Simple_repeat 1 117 0 2161 165 6 0 chr6 18232598 18232962 -171046592 - L1PB4 LINE L1 -2 6154 5789 270 136 0 0 chr6 18232962 18233006 -171046548 + (TG)n Simple_repeat Simple_repeat 2 45 0 455 243 28 62 chr6 18233103 18233280 -171046274 - MLT1J LTR MaLR -24 487 317 2050 142 3 0 chr6 18234036 18234331 -171045223 - AluSx SINE Alu -16 296 1 299 322 42 25 chr6 18234958 18235076 -171044478 + L2 LINE L2 3153 3272 0 852 149 186 0 chr6 18235342 18235536 -171044018 + L1MD2 LINE L1 6113 6342 -17 34 0 0 0 chr6 18235558 18235592 -171043962 + AT_rich Low_complexity Low_complexity 1 34 0 6591 76 8 0 chr6 18235728 18236652 -171042902 + L1PA13 LINE L1 5214 6144 -19 32 57 0 0 chr6 18236826 18236879 -171042675 + AT_rich Low_complexity Low_complexity 1 53 0 418 93 0 27 chr6 18237256 18237331 -171042223 - L1MA7 LINE L1 -25 6266 6194 1870 161 0 26 chr6 18237517 18237828 -171041726 + AluJb SINE Alu 3 305 -7 483 18 0 0 chr6 18239510 18239566 -171039988 + (TA)n Simple_repeat Simple_repeat 1 56 0 306 223 43 0 chr6 18240548 18240642 -171038912 - L1ME4a LINE L1 -1 6120 6023 * 4249 188 54 17 chr6 18240640 18242344 -171037210 + L1MB7 LINE L1 4381 6155 -29 406 190 115 2 chr6 18242497 18242661 -171036893 + LTR54B LTR ERV1 68 279 -219 401 266 0 47 chr6 18242851 18243020 -171036534 - MER34 LTR ERV1 -362 180 20 242 95 0 0 chr6 18243184 18243226 -171036328 + L1MB7 LINE L1 6142 6183 -1 303 28 0 0 chr6 18243357 18243393 -171036161 + (CA)n Simple_repeat Simple_repeat 1 36 0 230 241 19 0 chr6 18243500 18243554 -171036000 - MER113 DNA MER1_type? 0 521 467 440 219 18 0 chr6 18243693 18243807 -171035747 - MER113 DNA MER1_type? -405 116 1 554 287 59 87 chr6 18245485 18245990 -171033564 - MLT1J LTR MaLR -7 504 14 502 262 81 7 chr6 18246568 18246717 -171032837 - L1MC4a LINE L1 -1965 5843 5684 23 0 0 0 chr6 18247078 18247101 -171032453 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr6 18247555 18247589 -171031965 + AT_rich Low_complexity Low_complexity 1 34 0 227 325 49 32 chr6 18248159 18248282 -171031272 - MIR SINE MIR -64 144 20 333 275 152 7 chr6 18248565 18248703 -171030851 + MIR3 SINE MIR 29 186 -22 228 143 0 0 chr6 18249476 18249518 -171030036 + (TG)n Simple_repeat Simple_repeat 2 43 0 1534 251 100 34 chr6 18249658 18250069 -171029485 - L1ME LINE L1 -4637 1903 1521 2510 96 0 0 chr6 18250069 18250381 -171029173 - AluSx SINE Alu 0 312 1 1534 251 100 34 chr6 18250381 18250985 -171028569 - L1ME LINE L1 -5019 1521 846 387 271 58 58 chr6 18251234 18251441 -171028113 - L1ME LINE L1 -5862 668 462 230 269 40 99 chr6 18251645 18251737 -171027817 + L1ME LINE L1 103 178 -5892 195 42 0 0 chr6 18251737 18251761 -171027793 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 230 269 40 99 chr6 18251761 18251869 -171027685 + L1ME LINE L1 178 291 -5779 204 40 0 0 chr6 18252984 18253009 -171026545 + (TG)n Simple_repeat Simple_repeat 2 26 0 423 351 21 21 chr6 18253493 18253684 -171025870 - MIR3 SINE MIR -6 202 12 397 209 299 8 chr6 18255054 18255188 -171024366 + MER5A DNA MER1_type 9 181 -8 185 180 20 0 chr6 18255344 18255394 -171024160 + (TA)n Simple_repeat Simple_repeat 1 51 0 248 338 0 14 chr6 18255503 18255577 -171023977 - L2 LINE L2 -46 3226 3154 188 179 0 89 chr6 18256217 18256273 -171023281 - MIR3 SINE MIR -5 203 153 400 200 0 0 chr6 18256304 18256374 -171023180 - MIR3 SINE MIR -52 156 87 4258 212 61 88 chr6 18256600 18257029 -171022525 - L1ME LINE L1 -3890 2650 2211 2138 131 0 0 chr6 18257029 18257319 -171022235 + AluSx SINE Alu 14 303 -9 4258 212 61 88 chr6 18257319 18258168 -171021386 - L1ME LINE L1 -4329 2211 1469 231 61 0 0 chr6 18258168 18258201 -171021353 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4258 212 61 88 chr6 18258201 18258740 -171020814 - L1ME LINE L1 -5071 1469 917 303 362 53 32 chr6 18259209 18259491 -171020063 - L1ME LINE L1 -6194 346 59 274 287 29 103 chr6 18259491 18259627 -171019927 - MER5B DNA MER1_type -3 175 50 713 307 46 8 chr6 18259804 18260042 -171019512 + MIR SINE MIR 6 252 -10 241 295 0 13 chr6 18260034 18260112 -171019442 - MIR3 SINE MIR -40 168 92 * 243 0 0 0 chr6 18260484 18260511 -171019043 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 266 257 13 0 chr6 18261988 18262077 -171017477 + MIR SINE MIR 103 192 -65 388 312 0 0 chr6 18262158 18262267 -171017287 - MIR SINE MIR -1 261 153 203 133 0 0 chr6 18262317 18262347 -171017207 - MIR SINE MIR -115 147 118 180 97 0 0 chr6 18262363 18262394 -171017160 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 962 177 86 38 chr6 18262509 18262718 -171016836 + MER20 DNA MER1_type 1 219 0 261 368 7 14 chr6 18263629 18263773 -171015781 + GA-rich Low_complexity Low_complexity 4 146 0 1751 178 15 15 chr6 18265342 18265674 -171013880 + L1MC1 LINE L1 5907 6238 -95 883 135 8 0 chr6 18265932 18266058 -171013496 - MER20 DNA MER1_type 0 219 93 1359 257 149 39 chr6 18267131 18267749 -171011805 + L2 LINE L2 2172 2857 -457 1369 203 11 85 chr6 18267752 18268146 -171011408 + MLT1A1 LTR MaLR 1 456 -1 864 298 91 26 chr6 18268147 18268577 -171010977 + L2 LINE L2 2856 3313 0 553 261 174 19 chr6 18268859 18269066 -171010488 - MIR SINE MIR -1 261 23 309 256 13 13 chr6 18270693 18270771 -171008783 - MER102a DNA MER1_type -3 327 250 368 314 87 37 chr6 18270849 18271026 -171008528 - MER102a DNA MER1_type -66 264 70 2409 86 3 3 chr6 18271026 18271329 -171008225 - AluSq SINE Alu -10 303 1 368 314 87 37 chr6 18271329 18271393 -171008161 - MER102a DNA MER1_type -260 70 11 236 315 185 0 chr6 18271557 18271703 -171007851 + MIR3 SINE MIR 21 193 -15 515 277 6 51 chr6 18271874 18272051 -171007503 + MER5B DNA MER1_type 10 178 0 686 253 0 0 chr6 18272420 18272582 -171006972 + MER96B DNA MER1_type? 251 412 -5 381 254 85 0 chr6 18272600 18272718 -171006836 + MIR SINE MIR 90 217 -45 306 235 209 0 chr6 18273139 18273254 -171006300 - MER5A DNA MER1_type -5 184 46 640 171 57 0 chr6 18273254 18273359 -171006195 - MER45A DNA AcHobo -1 177 67 667 162 0 0 chr6 18273457 18273556 -171005998 + AluJ/FLAM SINE Alu 1 99 -213 258 200 44 0 chr6 18273624 18273669 -171005885 - MER5A DNA MER1_type -134 55 9 991 185 77 15 chr6 18273684 18273879 -171005675 + MER3 DNA MER1_type 1 207 -2 450 0 0 0 chr6 18274116 18274166 -171005388 + (TA)n Simple_repeat Simple_repeat 2 51 0 742 155 16 28 chr6 18274675 18274999 -171004555 + GA-rich Low_complexity Low_complexity 1 320 0 248 135 0 39 chr6 18275019 18275071 -171004483 + (GGGA)n Simple_repeat Simple_repeat 2 51 0 227 198 22 22 chr6 18275102 18275193 -171004361 + GA-rich Low_complexity Low_complexity 2 92 0 253 273 91 21 chr6 18275542 18275685 -171003869 + L1P LINE L1 4886 5038 -1108 624 279 73 49 chr6 18275706 18275963 -171003591 - L1ME LINE L1 -525 5639 5356 1815 167 0 0 chr6 18275963 18276294 -171003260 - AluJb SINE Alu 0 331 1 624 279 73 49 chr6 18276294 18276446 -171003108 - L1ME LINE L1 -808 5356 5209 2071 127 6 13 chr6 18277129 18277429 -171002125 + AluSx SINE Alu 1 300 -12 811 86 0 16 chr6 18277429 18277557 -171001997 + (GGAA)n Simple_repeat Simple_repeat 2 127 0 2071 127 6 13 chr6 18277557 18277570 -171001984 + AluSx SINE Alu 300 312 0 358 278 25 5 chr6 18277952 18278131 -171001423 + L3 LINE CR1 1193 1456 -121 295 275 114 23 chr6 18278627 18278758 -171000796 + MIR SINE MIR 2 144 -118 313 276 75 30 chr6 18278787 18278921 -171000633 - MIR SINE MIR -36 226 87 21 0 0 0 chr6 18280093 18280114 -170999440 + AT_rich Low_complexity Low_complexity 1 21 0 225 45 68 80 chr6 18281129 18281217 -170998337 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 185 235 103 29 chr6 18283932 18284000 -170995554 + L2 LINE L2 100 172 -3142 390 274 89 36 chr6 18284331 18284685 -170994869 + L2 LINE L2 2651 3021 -251 470 288 89 25 chr6 18285739 18285975 -170993579 - L2 LINE L2 -937 2377 2127 2410 134 48 70 chr6 18286615 18286961 -170992593 - Tigger2a DNA MER2_type -2275 433 98 231 36 0 0 chr6 18286961 18286989 -170992565 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2410 134 48 70 chr6 18286989 18287083 -170992471 - Tigger2a DNA MER2_type -2610 98 3 1024 127 7 0 chr6 18287093 18287243 -170992311 + AluJb SINE Alu 1 151 -161 2280 98 0 7 chr6 18287332 18287627 -170991927 - AluSg SINE Alu -17 293 1 1601 153 51 37 chr6 18288295 18288590 -170990964 + AluJb SINE Alu 1 299 -13 25 0 0 0 chr6 18290519 18290544 -170989010 + AT_rich Low_complexity Low_complexity 1 25 0 2489 84 0 0 chr6 18291906 18292217 -170987337 - AluY SINE Alu 0 311 1 572 124 277 22 chr6 18293140 18293277 -170986277 + MLT1C LTR MaLR 6 177 -290 460 192 0 0 chr6 18293282 18293360 -170986194 + FAM SINE Alu 97 174 -11 1614 171 26 55 chr6 18293441 18293750 -170985804 + AluJb SINE Alu 1 300 -12 943 197 67 31 chr6 18293750 18293973 -170985581 + MLT1C LTR MaLR 237 467 0 2316 99 0 0 chr6 18294214 18294516 -170985038 + AluSc SINE Alu 1 302 -7 263 324 152 58 chr6 18294818 18295001 -170984553 + L2 LINE L2 1271 1435 -1879 2361 112 16 48 chr6 18295001 18295377 -170984177 + THE1B LTR MaLR 1 364 0 263 324 152 58 chr6 18295377 18295896 -170983658 + L2 LINE L2 1435 2039 -1275 186 300 0 0 chr6 18295929 18295979 -170983575 + L2 LINE L2 2218 2267 -1047 342 324 28 0 chr6 18296538 18296646 -170982908 + L2 LINE L2 3203 3313 0 294 326 63 78 chr6 18296650 18297157 -170982397 + L2 LINE L2 2687 3181 -91 205 281 67 101 chr6 18299019 18299197 -170980357 + L2 LINE L2 2931 3102 -170 760 322 90 40 chr6 18299240 18299760 -170979794 - L2 LINE L2 -6 3307 2747 493 281 88 69 chr6 18299904 18300281 -170979273 + L2 LINE L2 2324 2707 -607 349 345 170 44 chr6 18300497 18300839 -170978715 + L2 LINE L2 2887 3271 -1 428 279 70 84 chr6 18302018 18302305 -170977249 - L2 LINE L2 -32 3240 2958 579 287 123 96 chr6 18303158 18303955 -170975599 + L2 LINE L2 2198 3030 -242 315 325 18 0 chr6 18303976 18304090 -170975464 + L2 LINE L2 2673 2788 -526 368 284 78 9 chr6 18304426 18304542 -170975012 - L2 LINE L2 0 3272 3149 299 282 0 12 chr6 18304654 18304739 -170974815 + L2 LINE L2 3230 3313 0 987 127 0 0 chr6 18305150 18305323 -170974231 + (TCCA)n Simple_repeat Simple_repeat 2 174 0 2211 96 14 3 chr6 18305607 18305899 -170973655 - AluSc SINE Alu -14 295 1 341 114 0 51 chr6 18307562 18307641 -170971913 + (TC)n Simple_repeat Simple_repeat 2 76 0 385 282 63 50 chr6 18308448 18308854 -170970700 + L1ME4a LINE L1 5461 5915 -206 2492 234 65 50 chr6 18309729 18310371 -170969183 - L1M4 LINE L1 -871 5275 4644 2346 94 3 0 chr6 18310371 18310668 -170968886 - AluY SINE Alu -13 298 1 2492 234 65 50 chr6 18310668 18310942 -170968612 - L1M4 LINE L1 -1502 4644 4341 523 138 0 0 chr6 18310942 18311022 -170968532 - MADE1 DNA Mariner 0 80 1 2492 234 65 50 chr6 18311022 18311070 -170968484 - L1M4 LINE L1 -1805 4341 4295 1851 83 4 0 chr6 18311071 18311311 -170968243 - LTR12 LTR ERV1 0 714 474 1370 124 0 5 chr6 18311311 18311512 -170968042 + AluY SINE Alu 104 303 -8 1823 92 251 136 chr6 18311513 18311947 -170967607 - LTR12 LTR ERV1 -230 484 1 488 204 35 42 chr6 18311947 18311979 -170967575 - L1M4 LINE L1 -1849 4297 4266 2317 166 8 0 chr6 18311979 18312341 -170967213 + MER47A DNA MER2_type 1 365 -1 488 204 35 42 chr6 18312341 18312450 -170967104 - L1M4 LINE L1 -1880 4266 4157 846 293 111 11 chr6 18312470 18312920 -170966634 + Charlie7 DNA MER1_type 89 583 -2029 6077 135 18 28 chr6 18313129 18314776 -170964778 + L1MA4A LINE L1 4658 6284 -19 5232 91 5 33 chr6 18315287 18315946 -170963608 - L1PA14 LINE L1 -17 6144 5507 2120 138 0 0 chr6 18315946 18316251 -170963303 - AluSx SINE Alu -2 310 6 5232 91 5 33 chr6 18316251 18316357 -170963197 - L1PA14 LINE L1 -654 5507 5400 1091 342 67 33 chr6 18316562 18317323 -170962231 + L2 LINE L2 2032 2818 -496 431 313 49 0 chr6 18318182 18318326 -170961228 + L2 LINE L2 3162 3312 -1 1369 201 123 18 chr6 18318760 18319006 -170960548 + MLT1D LTR MaLR 13 304 -201 1519 188 7 11 chr6 18319006 18319283 -170960271 + AluSx SINE Alu 37 312 0 1369 201 123 18 chr6 18319283 18319369 -170960185 + MLT1D LTR MaLR 304 380 -125 435 189 22 0 chr6 18319411 18319501 -170960053 - L1MA9 LINE L1 -34 6278 6187 1371 210 30 0 chr6 18319540 18319807 -170959747 - AluSg SINE Alu -17 293 19 269 286 39 0 chr6 18319814 18319891 -170959663 - AluY SINE Alu -4 297 218 2306 190 197 59 chr6 18319904 18320744 -170958810 - LTR12 LTR ERV1 -23 1523 6 539 216 119 57 chr6 18320849 18321025 -170958529 - pTR5 LTR ERV1 -1504 934 748 1573 118 0 0 chr6 18321030 18321251 -170958303 - AluY SINE Alu -90 221 1 1314 153 54 12 chr6 18321251 18321486 -170958068 - L1MA9 LINE L1 -254 6058 5814 1084 201 0 0 chr6 18321504 18321688 -170957866 - AluJo SINE Alu -14 298 115 1251 198 119 8 chr6 18321688 18321956 -170957598 + AluJb SINE Alu 1 298 -14 1436 176 23 55 chr6 18321956 18322189 -170957365 + L1 LINE L1 4321 4541 -1605 7851 123 27 14 chr6 18322189 18322387 -170957167 + Tigger3b DNA MER2_type 2 196 -2832 2250 93 0 3 chr6 18322387 18322677 -170956877 + AluSc SINE Alu 1 289 -20 7851 123 27 14 chr6 18322677 18323692 -170955862 + Tigger3b DNA MER2_type 196 1231 0 1436 176 23 55 chr6 18323692 18323805 -170955749 + L1 LINE L1 4541 4656 -1490 301 121 103 17 chr6 18323805 18323863 -170955691 + MLT1D LTR MaLR 402 464 -41 281 98 0 20 chr6 18324118 18324169 -170955385 + (CA)n Simple_repeat Simple_repeat 2 51 0 2525 71 3 0 chr6 18324907 18325217 -170954337 + AluY SINE Alu 1 311 0 258 306 28 9 chr6 18325280 18325388 -170954166 - MIR SINE MIR -42 220 111 647 231 176 18 chr6 18326122 18326343 -170953211 - MER112 DNA MER1_type 0 256 1 6701 173 29 11 chr6 18326563 18326761 -170952793 - L1MC1 LINE L1 -9 6324 6131 2059 106 3 40 chr6 18326761 18327063 -170952491 - AluSq SINE Alu -22 291 1 6701 173 29 11 chr6 18327063 18328827 -170950727 - L1MC1 LINE L1 -202 6131 4330 2623 132 51 10 chr6 18328829 18329238 -170950316 + MSTB LTR MaLR 1 426 0 9433 185 6 7 chr6 18329238 18330876 -170948678 + MSTB-int LTR MaLR 1 1637 -14 2511 162 36 12 chr6 18330889 18331302 -170948252 + MSTB LTR MaLR 1 423 -3 1739 208 25 0 chr6 18331303 18331664 -170947890 - L1MC1 LINE L1 -1811 4335 3966 384 277 31 19 chr6 18332440 18332599 -170946955 - MIR SINE MIR -5 257 97 2113 166 52 6 chr6 18332651 18333000 -170946554 + MLT1A1 LTR MaLR 1 365 0 2236 121 0 6 chr6 18333101 18333415 -170946139 - AluSx SINE Alu 0 312 1 1313 269 53 27 chr6 18333790 18334239 -170945315 - LTR16B LTR ERVL 0 464 4 2888 161 25 42 chr6 18334377 18334906 -170944648 + MLT2B1 LTR ERVL 1 520 0 2241 168 35 38 chr6 18335875 18336328 -170943226 + MLT1C LTR MaLR 1 452 -15 198 71 0 0 chr6 18336629 18336657 -170942897 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1459 136 9 5 chr6 18338874 18339088 -170940466 + AluJb SINE Alu 87 301 -11 261 322 52 17 chr6 18339091 18339206 -170940348 + MIR SINE MIR 62 180 -82 415 206 0 62 chr6 18339446 18339543 -170940011 + L1MC5 LINE L1 7033 7123 -838 600 329 24 0 chr6 18339616 18339826 -170939728 + L2 LINE L2 2874 3088 -225 769 324 16 28 chr6 18339910 18340160 -170939394 + MIR SINE MIR 11 257 -5 447 214 137 23 chr6 18340209 18340340 -170939214 + L2 LINE L2 3167 3312 -1 197 333 76 23 chr6 18340938 18341070 -170938484 - L3 LINE CR1 -330 1247 1109 313 257 7 71 chr6 18341072 18341212 -170938342 - MER94 DNA DNA 0 134 4 1850 174 0 0 chr6 18341228 18341516 -170938038 - AluJo SINE Alu -20 292 5 791 270 72 28 chr6 18342623 18343314 -170936240 - L1ME LINE L1 -580 5582 4710 300 265 0 78 chr6 18343490 18343592 -170935962 - L1ME3A LINE L1 -115 6055 5962 811 133 0 53 chr6 18343602 18343753 -170935801 - FLAM_C SINE Alu 0 143 1 5293 221 62 54 chr6 18343809 18344590 -170934964 - L1ME1 LINE L1 -19 6147 5374 2469 75 0 0 chr6 18344590 18344931 -170934623 - AluY SINE Alu 0 311 1 5293 221 62 54 chr6 18344931 18345734 -170933820 - L1ME1 LINE L1 -792 5374 4579 2464 76 3 0 chr6 18345734 18346036 -170933518 - AluSg SINE Alu -7 303 1 5293 221 62 54 chr6 18346036 18346604 -170932950 - L1ME1 LINE L1 -1587 4579 3968 2138 113 0 0 chr6 18346604 18346927 -170932627 + AluSq SINE Alu 1 323 0 5293 221 62 54 chr6 18346927 18347302 -170932252 - L1ME1 LINE L1 -2198 3968 3598 440 309 63 34 chr6 18347750 18348056 -170931498 - L1ME LINE L1 -5876 654 65 1771 204 165 45 chr6 18348210 18348950 -170930604 - L1MC5 LINE L1 -640 7321 6478 546 307 90 26 chr6 18349085 18349662 -170929892 - HAL1b LINE L1 -525 823 210 21 71 0 0 chr6 18349731 18349773 -170929781 + AT_rich Low_complexity Low_complexity 1 42 0 50 31 0 0 chr6 18349834 18349898 -170929656 + AT_rich Low_complexity Low_complexity 1 64 0 184 216 54 68 chr6 18350418 18350492 -170929062 - MIR SINE MIR -159 103 31 198 246 0 0 chr6 18351222 18351283 -170928271 + (TA)n Simple_repeat Simple_repeat 2 62 0 346 288 130 40 chr6 18352564 18352741 -170926813 - MIR SINE MIR -50 212 20 315 294 196 39 chr6 18354578 18354782 -170924772 - MIR SINE MIR -12 250 15 4129 172 61 45 chr6 18355062 18355900 -170923654 + MER21B LTR ERV1 2 852 -11 6508 119 80 51 chr6 18356057 18356700 -170922854 + Tigger3b DNA MER2_type 1 624 -2404 1690 192 0 7 chr6 18356700 18357007 -170922547 - AluJo SINE Alu 0 305 1 6508 119 80 51 chr6 18357007 18357210 -170922344 + Tigger3b DNA MER2_type 624 820 -2208 230 81 27 0 chr6 18357210 18357247 -170922307 + (CTCA)n Simple_repeat Simple_repeat 1 38 0 6508 119 80 51 chr6 18357247 18357316 -170922238 + Tigger3b DNA MER2_type 820 886 -2142 2176 121 10 0 chr6 18357316 18357621 -170921933 - AluSx SINE Alu -4 308 1 6508 119 80 51 chr6 18357621 18357898 -170921656 + Tigger3b DNA MER2_type 886 1231 0 1183 240 83 52 chr6 18358563 18359008 -170920546 + MLT1L LTR MaLR 126 584 -31 2203 110 7 0 chr6 18359039 18359348 -170920206 - AluSp SINE Alu -2 311 1 2184 222 14 34 chr6 18359354 18359908 -170919646 - MER74A LTR ERVL -12 546 4 1342 113 43 0 chr6 18359993 18360179 -170919375 + AluJb SINE Alu 105 298 -14 702 282 127 50 chr6 18360326 18360766 -170918788 - MLT1J LTR MaLR -35 476 3 2360 81 0 13 chr6 18360811 18361119 -170918435 - AluY SINE Alu -7 304 1 192 186 53 0 chr6 18361685 18361798 -170917756 + (TA)n Simple_repeat Simple_repeat 2 120 0 407 217 8 42 chr6 18362022 18362142 -170917412 - MIR SINE MIR 0 262 147 2096 123 0 0 chr6 18362417 18362726 -170916828 - AluSx SINE Alu 0 309 1 2320 108 16 90 chr6 18363277 18363710 -170915844 + L1MA2 LINE L1 5902 6302 -2 1318 282 82 28 chr6 18364950 18365414 -170914140 - LTR33 LTR ERVL -2 519 31 2272 134 48 70 chr6 18415773 18416119 -170863435 - Tigger2a DNA MER2_type -2275 433 98 231 36 0 0 chr6 18416119 18416147 -170863407 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2272 134 48 70 chr6 18416147 18416241 -170863313 - Tigger2a DNA MER2_type -2610 98 3 1032 127 7 0 chr6 18416251 18416401 -170863153 + AluJb SINE Alu 1 151 -161 2298 98 0 7 chr6 18416490 18416785 -170862769 - AluSg SINE Alu -17 293 1 1612 153 51 37 chr6 18417453 18417748 -170861806 + AluJb SINE Alu 1 299 -13 25 0 0 0 chr6 18419677 18419702 -170859852 + AT_rich Low_complexity Low_complexity 1 25 0 2509 84 0 0 chr6 18421064 18421375 -170858179 - AluY SINE Alu 0 311 1 567 124 277 22 chr6 18422298 18422435 -170857119 + MLT1C LTR MaLR 6 177 -290 439 192 0 0 chr6 18422440 18422518 -170857036 + FAM SINE Alu 97 174 -11 1628 171 26 55 chr6 18422599 18422908 -170856646 + AluJb SINE Alu 1 300 -12 939 197 67 31 chr6 18422908 18423131 -170856423 + MLT1C LTR MaLR 237 467 0 2336 99 0 0 chr6 18423372 18423674 -170855880 + AluSc SINE Alu 1 302 -7 2229 112 16 48 chr6 18424159 18424535 -170855019 + THE1B LTR MaLR 1 364 0 312 324 28 0 chr6 18425696 18425804 -170853750 + L2 LINE L2 3203 3313 0 207 344 62 69 chr6 18425808 18426099 -170853455 + L2 LINE L2 2687 2975 -339 204 337 60 0 chr6 18427663 18427746 -170851808 + MIR SINE MIR 67 154 -108 1625 164 32 4 chr6 18428460 18428741 -170850813 + AluJo SINE Alu 1 289 -23 387 169 0 0 chr6 18428749 18428820 -170850734 + (TA)n Simple_repeat Simple_repeat 1 71 0 361 236 71 44 chr6 18428827 18429009 -170850545 - HAL1 LINE L1 0 2507 2321 * 505 328 58 9 chr6 18429002 18429331 -170850223 - L1ME3A LINE L1 -230 5940 5596 23 33 0 0 chr6 18429368 18429398 -170850156 + AT_rich Low_complexity Low_complexity 1 30 0 1230 150 13 18 chr6 18429399 18429578 -170849976 - L1MA4 LINE L1 -10 6290 6112 180 0 0 0 chr6 18429578 18429598 -170849956 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1919 149 7 0 chr6 18429598 18429880 -170849674 - AluSx SINE Alu -28 284 1 1230 150 13 18 chr6 18429880 18429925 -170849629 - L1MA4 LINE L1 -186 6114 6066 883 273 191 71 chr6 18430096 18430365 -170849189 + L2 LINE L2 1822 2057 -1257 378 132 0 0 chr6 18430365 18430418 -170849136 - AluJb SINE Alu -84 218 166 883 273 191 71 chr6 18430418 18430979 -170848575 + L2 LINE L2 2057 2810 -504 257 289 37 70 chr6 18431131 18431318 -170848236 + L2 LINE L2 3112 3292 -21 2194 103 3 13 chr6 18431486 18431786 -170847768 - AluSx SINE Alu -15 297 1 2032 138 27 0 chr6 18432258 18432556 -170846998 + AluSx SINE Alu 3 308 -4 421 210 74 80 chr6 18433296 18433458 -170846096 + MIR SINE MIR 23 183 -79 2522 174 154 24 chr6 18433686 18433940 -170845614 + MLT1E1 LTR MaLR 1 221 -433 1904 133 3 36 chr6 18433940 18434295 -170845259 - AluSx SINE Alu 0 312 1 2522 174 154 24 chr6 18434295 18434619 -170844935 + MLT1E1 LTR MaLR 221 654 0 295 209 45 27 chr6 18434719 18434829 -170844725 - L1MEc LINE L1 -3238 2977 2866 * 2089 251 63 19 chr6 18434822 18436580 -170842974 - L1MEc LINE L1 -4423 1973 35 2545 53 0 7 chr6 18437444 18437745 -170841809 + AluY SINE Alu 1 299 -12 862 269 155 5 chr6 18437962 18438389 -170841165 + L2 LINE L2 2823 3313 0 1236 144 45 0 chr6 18438702 18438903 -170840651 + MER2 DNA MER2_type 1 210 -135 234 265 20 0 chr6 18438945 18438994 -170840560 + MER2 DNA MER2_type 283 332 -13 252 0 0 0 chr6 18439627 18439655 -170839899 + (TC)n Simple_repeat Simple_repeat 1 28 0 1738 150 32 42 chr6 18440109 18440422 -170839132 - AluJb SINE Alu -2 310 1 2514 57 7 3 chr6 18440538 18440839 -170838715 + AluY SINE Alu 1 302 -9 293 205 8 131 chr6 18441053 18441108 -170838446 - MIR SINE MIR -70 192 158 2384 102 0 3 chr6 18441108 18441421 -170838133 - AluSx SINE Alu 0 312 1 293 205 8 131 chr6 18441421 18441487 -170838067 - MIR SINE MIR -104 158 86 260 336 4 13 chr6 18441568 18441736 -170837818 - MER5A DNA MER1_type -19 160 4 2262 81 14 0 chr6 18442969 18443254 -170836300 + AluSq SINE Alu 3 291 -22 28 0 0 0 chr6 18443254 18443282 -170836272 + AT_rich Low_complexity Low_complexity 1 28 0 1495 206 42 13 chr6 18443661 18443971 -170835583 - MER58B DNA MER1_type -2 339 21 618 189 68 20 chr6 18444785 18444933 -170834621 + MER63 DNA MER1_type 904 1058 -4 5346 128 31 36 chr6 18444966 18445680 -170833874 - MER49 LTR ERV1 0 923 212 2152 108 3 3 chr6 18445680 18445976 -170833578 - AluSx SINE Alu -8 304 9 5346 128 31 36 chr6 18445976 18446188 -170833366 - MER49 LTR ERV1 -711 212 1 317 274 198 25 chr6 18446744 18446901 -170832653 + MIR3 SINE MIR 1 184 -24 26 64 0 0 chr6 18446902 18446949 -170832605 + AT_rich Low_complexity Low_complexity 1 47 0 282 56 0 0 chr6 18447912 18447948 -170831606 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 456 341 12 12 chr6 18448358 18448525 -170831029 - MIR3 SINE MIR -21 187 21 336 243 135 18 chr6 18448735 18448846 -170830708 + MER94 DNA DNA 10 133 -1 2424 92 0 0 chr6 18449138 18449441 -170830113 - AluSg SINE Alu -7 303 1 564 278 41 45 chr6 18449801 18450067 -170829487 + MER97c DNA MER1_type? 810 1074 -16 337 245 18 110 chr6 18450144 18450307 -170829247 + L2 LINE L2 2592 2739 -575 801 272 8 56 chr6 18450342 18450478 -170829076 + MIR SINE MIR 25 145 -117 1894 143 61 18 chr6 18450478 18450807 -170828747 - MER2 DNA MER2_type -1 343 1 801 272 8 56 chr6 18450807 18450920 -170828634 + MIR SINE MIR 145 262 0 2198 110 3 7 chr6 18450935 18451235 -170828319 + AluSp SINE Alu 1 299 -14 2215 75 4 0 chr6 18451237 18451517 -170828037 + AluY SINE Alu 22 302 -9 223 302 71 93 chr6 18451560 18451980 -170827574 + L2 LINE L2 2832 3242 -30 225 135 39 77 chr6 18451981 18452033 -170827521 - L1M3f LINE L1 -4213 1115 1066 184 315 0 19 chr6 18452539 18452593 -170826961 + L3b LINE CR1 1512 1564 -19 213 136 0 23 chr6 18452834 18452878 -170826676 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 1214 188 9 5 chr6 18453157 18453380 -170826174 - AluJb SINE Alu -2 310 87 1891 130 0 11 chr6 18454253 18454530 -170825024 - AluSq SINE Alu -1 312 39 215 176 103 0 chr6 18454546 18454614 -170824940 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 362 343 96 23 chr6 18455257 18455703 -170823851 + L2 LINE L2 2524 3004 -309 774 200 117 0 chr6 18455813 18455958 -170823596 + FAM SINE Alu 5 166 -9 2378 82 0 0 chr6 18456061 18456353 -170823201 + AluSg SINE Alu 3 294 -16 642 265 56 67 chr6 18456840 18457226 -170822328 + L1MC4a LINE L1 5537 5796 -325 3440 172 103 28 chr6 18457252 18457298 -170822256 - L1MB8 LINE L1 -1 6177 6136 1271 191 164 37 chr6 18457298 18457622 -170821932 - MLT1A1 LTR MaLR 0 365 1 3440 172 103 28 chr6 18457622 18458067 -170821487 - L1MB8 LINE L1 -42 6136 5607 2520 73 0 0 chr6 18458067 18458370 -170821184 + AluY SINE Alu 1 303 -8 3440 172 103 28 chr6 18458370 18458632 -170820922 - L1MB8 LINE L1 -571 5607 5366 309 210 63 112 chr6 18458678 18458745 -170820809 + L1ME4a LINE L1 5984 6053 -68 1756 206 7 51 chr6 18458745 18459158 -170820396 - MLT2C1 LTR ERVL -2 395 1 309 210 63 112 chr6 18459158 18459206 -170820348 + L1ME4a LINE L1 6053 6093 -28 922 135 0 0 chr6 18459206 18459339 -170820215 - FLAM_C SINE Alu 0 133 1 309 210 63 112 chr6 18459339 18459365 -170820189 + L1ME4a LINE L1 6093 6119 -2 322 179 0 0 chr6 18459503 18459559 -170819995 - MLT1D LTR MaLR 0 505 450 3946 114 0 20 chr6 18459559 18459832 -170819722 - MER1A DNA MER1_type -2173 527 269 2439 82 0 3 chr6 18459832 18460137 -170819417 - AluSq SINE Alu -9 304 1 3946 114 0 20 chr6 18460137 18460399 -170819155 - MER1A DNA MER1_type -2431 269 3 204 40 0 0 chr6 18460944 18460969 -170818585 + (A)n Simple_repeat Simple_repeat 1 25 0 2253 114 0 0 chr6 18462019 18462308 -170817246 - AluSx SINE Alu -20 292 4 2509 194 52 40 chr6 18462367 18462636 -170816918 - L1MD3 LINE L1 0 8042 7778 2319 102 0 0 chr6 18462636 18462940 -170816614 - AluSq SINE Alu -9 304 1 2509 194 52 40 chr6 18462940 18463239 -170816315 - L1MD3 LINE L1 -264 7778 7480 2118 107 7 17 chr6 18463239 18463538 -170816016 - AluSx SINE Alu -4 308 13 2509 194 52 40 chr6 18463538 18463621 -170815933 - L1MD3 LINE L1 -562 7480 7400 226 273 104 22 chr6 18463628 18463811 -170815743 - L1MB8 LINE L1 -949 5197 5000 * 492 216 72 12 chr6 18463799 18464031 -170815523 + L1ME4a LINE L1 5820 6119 -2 601 291 64 13 chr6 18464327 18464561 -170814993 + MIR SINE MIR 17 262 0 195 100 0 0 chr6 18464899 18464929 -170814625 + (TG)n Simple_repeat Simple_repeat 2 31 0 2137 124 13 0 chr6 18464995 18465294 -170814260 + AluSq SINE Alu 3 305 -8 2124 116 82 25 chr6 18466498 18466851 -170812703 + THE1C LTR MaLR 3 375 0 238 333 13 0 chr6 18466969 18467047 -170812507 - L2 LINE L2 -1 3312 3234 815 86 103 0 chr6 18467075 18467192 -170812362 + L1MA6 LINE L1 6171 6299 -1 2144 138 0 0 chr6 18467435 18467732 -170811822 - AluSg SINE Alu -13 297 1 303 233 0 35 chr6 18467884 18467970 -170811584 + A-rich Low_complexity Low_complexity 2 84 0 564 230 79 0 chr6 18469035 18469200 -170810354 + MER5B DNA MER1_type 1 178 0 26 50 0 0 chr6 18469559 18469599 -170809955 + AT_rich Low_complexity Low_complexity 1 40 0 1889 151 6 19 chr6 18470287 18470598 -170808956 + AluJb SINE Alu 1 307 -5 735 227 0 0 chr6 18470607 18470739 -170808815 + FLAM_C SINE Alu 2 133 0 333 0 0 0 chr6 18471606 18471643 -170807911 + (TA)n Simple_repeat Simple_repeat 2 38 0 953 120 8 15 chr6 18471654 18471787 -170807767 - FLAM_C SINE Alu 0 133 2 262 276 61 10 chr6 18472413 18472511 -170807043 - MIR3 SINE MIR -7 201 99 285 292 25 75 chr6 18472764 18472840 -170806714 - MIR SINE MIR -108 154 89 2401 86 0 0 chr6 18472840 18473144 -170806410 + AluSx SINE Alu 2 305 -7 285 292 25 75 chr6 18473144 18473228 -170806326 - MIR SINE MIR -173 89 2 278 303 56 41 chr6 18473421 18473616 -170805938 + L1ME4a LINE L1 5835 6032 -89 21 82 0 0 chr6 18473659 18473708 -170805846 + AT_rich Low_complexity Low_complexity 1 49 0 1942 129 4 4 chr6 18474268 18474582 -170804972 - AluJb SINE Alu 0 316 3 1508 184 3 70 chr6 18474931 18475134 -170804420 - AluJo SINE Alu -7 305 131 2603 47 0 0 chr6 18475134 18475435 -170804119 + AluY SINE Alu 1 301 -10 1508 184 3 70 chr6 18475435 18475558 -170803996 - AluJo SINE Alu -181 131 1 216 255 0 0 chr6 18475977 18476028 -170803526 + L2 LINE L2 3149 3199 -73 1583 153 33 4 chr6 18477244 18477486 -170802068 - AluJb SINE Alu -15 297 49 918 66 33 0 chr6 18477488 18477610 -170801944 + Charlie3 DNA MER1_type 375 500 -2210 * 3600 77 4 11 chr6 18477604 18478072 -170801482 + Charlie3 DNA MER1_type 2242 2706 -4 236 261 210 17 chr6 18478198 18478317 -170801237 + MIR SINE MIR 66 207 -55 14734 178 18 23 chr6 18478328 18482474 -170797080 + L1PA16 LINE L1 912 5021 -1848 2433 84 0 0 chr6 18482474 18482773 -170796781 + AluY SINE Alu 1 299 -12 14734 178 18 23 chr6 18482773 18484612 -170794942 + L1PA16 LINE L1 5021 6867 -2 2332 91 7 0 chr6 18485062 18485359 -170794195 + AluY SINE Alu 1 299 -12 192 254 32 0 chr6 18485740 18485803 -170793751 - MIR SINE MIR -123 139 75 22 0 0 0 chr6 18486310 18486332 -170793222 + AT_rich Low_complexity Low_complexity 1 22 0 2371 78 3 0 chr6 18486820 18487116 -170792438 + AluY SINE Alu 1 297 -14 5797 126 29 3 chr6 18487182 18488367 -170791187 - L1PB1 LINE L1 0 6151 4938 11263 102 60 6 chr6 18488408 18488453 -170791101 - L1PBa LINE L1 -3738 3124 3083 2103 107 0 4 chr6 18488453 18488784 -170790770 - AluSg SINE Alu 0 330 1 11263 102 60 6 chr6 18488784 18491561 -170787993 - L1PBa LINE L1 -3779 3083 4 250 256 73 0 chr6 18491638 18491720 -170787834 - L1ME LINE L1 -223 5898 5811 6382 96 0 14 chr6 18492628 18493875 -170785679 - L1PA13 LINE L1 0 6163 4924 795 154 51 69 chr6 18493877 18494018 -170785536 + MER5A DNA MER1_type 8 147 -42 1841 169 0 3 chr6 18494018 18494313 -170785241 - AluJb SINE Alu -18 294 1 795 154 51 69 chr6 18494313 18494346 -170785208 + MER5A DNA MER1_type 147 179 -10 2221 85 0 7 chr6 18494571 18494865 -170784689 + AluSc SINE Alu 1 292 -17 21 71 0 0 chr6 18495072 18495114 -170784440 + AT_rich Low_complexity Low_complexity 1 42 0 3479 208 62 29 chr6 18495150 18495967 -170783587 - MER21B LTR ERV1 -1 862 19 414 188 10 89 chr6 18495964 18496065 -170783489 - MER21B LTR ERV1 -756 107 15 * 33 18 0 36 chr6 18496156 18496195 -170783359 + AT_rich Low_complexity Low_complexity 1 39 -14 2484 68 0 0 chr6 18496195 18496490 -170783064 - AluY SINE Alu -16 295 1 33 18 0 36 chr6 18496490 18496505 -170783049 + AT_rich Low_complexity Low_complexity 39 53 0 2111 134 0 0 chr6 18496520 18496819 -170782735 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr6 18497163 18497185 -170782369 + AT_rich Low_complexity Low_complexity 1 22 0 215 30 0 30 chr6 18497494 18497527 -170782027 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 283 249 84 89 chr6 18498422 18498780 -170780774 - HAL1 LINE L1 -868 1639 1284 262 284 52 26 chr6 18499635 18499751 -170779803 - L1M4 LINE L1 -2228 3918 3800 378 329 147 35 chr6 18499763 18500314 -170779240 - MLT1L LTR MaLR -2 613 1 234 0 0 0 chr6 18500342 18500368 -170779186 + (TG)n Simple_repeat Simple_repeat 2 27 0 931 115 0 0 chr6 18500368 18500490 -170779064 - AluSp SINE Alu -191 122 2 2414 86 0 0 chr6 18500490 18500790 -170778764 - AluSq SINE Alu -8 305 6 918 136 30 12 chr6 18501163 18501332 -170778222 - L1MD1 LINE L1 -44 6198 6027 533 108 69 10 chr6 18501345 18501447 -170778107 - L1MB2 LINE L1 -2 6169 6062 636 220 0 0 chr6 18502002 18502143 -170777411 + L2 LINE L2 620 760 -2554 2902 261 84 51 chr6 18502273 18503028 -170776526 + L2 LINE L2 1560 2289 -1024 270 0 0 0 chr6 18503028 18503058 -170776496 + (CA)n Simple_repeat Simple_repeat 2 31 0 2191 145 20 0 chr6 18503058 18503410 -170776144 - L1PB3 LINE L1 -1 6153 5795 2902 261 84 51 chr6 18503410 18504088 -170775466 + L2 LINE L2 2289 2943 -370 2426 90 0 3 chr6 18504088 18504399 -170775155 - AluSg SINE Alu 0 310 1 1816 161 0 3 chr6 18504400 18504686 -170774868 - AluJo SINE Alu -17 295 11 2902 261 84 51 chr6 18504686 18504933 -170774621 + L2 LINE L2 2942 3313 0 1720 158 79 20 chr6 18505526 18505880 -170773674 + THE1C LTR MaLR 1 375 0 392 338 51 56 chr6 18506234 18506666 -170772888 - L2 LINE L2 -7 3265 2836 790 238 16 0 chr6 18506784 18506969 -170772585 + MER5A DNA MER1_type 1 188 -1 405 323 79 18 chr6 18507469 18507633 -170771921 + MER5B DNA MER1_type 3 176 -2 2088 112 32 0 chr6 18508010 18508295 -170771259 + AluSx SINE Alu 1 294 -18 421 222 6 29 chr6 18508295 18508466 -170771088 + GA-rich Low_complexity Low_complexity 1 167 0 607 132 26 26 chr6 18508677 18508791 -170770763 + AluSg/x SINE Alu 196 309 -1 1164 156 47 19 chr6 18508801 18509012 -170770542 + MSTB LTR MaLR 210 426 0 765 146 8 23 chr6 18509230 18509360 -170770194 - FLAM_C SINE Alu -14 129 2 2040 155 0 16 chr6 18509836 18510153 -170769401 + AluSx SINE Alu 1 312 0 1161 283 27 24 chr6 18610184 18610632 -170668922 - L2 LINE L2 -80 3233 2778 1639 127 37 40 chr6 18610695 18610994 -170668560 + AluSg SINE Alu 1 298 -12 2310 74 0 7 chr6 18610996 18611306 -170668248 + AluY SINE Alu 3 310 -1 1981 127 14 0 chr6 18611331 18611623 -170667931 + AluSx SINE Alu 1 296 -16 1349 261 124 13 chr6 18611624 18612172 -170667382 + L2 LINE L2 1413 2021 -1293 284 103 0 0 chr6 18612201 18612240 -170667314 - MLT1A1 LTR MaLR 0 374 336 816 107 0 0 chr6 18612242 18612354 -170667200 + AluSg/x SINE Alu 86 197 -113 1274 159 103 43 chr6 18612357 18612497 -170667057 - MLT1A1 LTR MaLR -45 320 190 1619 173 18 0 chr6 18612497 18612774 -170666780 - AluJo SINE Alu -27 285 4 1274 159 103 43 chr6 18612774 18612935 -170666619 - MLT1A1 LTR MaLR -175 190 1 282 273 84 65 chr6 18612936 18613090 -170666464 + L2 LINE L2 2077 2233 -1081 415 246 85 15 chr6 18613097 18613227 -170666327 - MLT1I LTR MaLR -13 396 258 1804 134 28 3 chr6 18613243 18613533 -170666021 - AluSg1 SINE Alu -12 297 1 2217 84 3 7 chr6 18613547 18613843 -170665711 - AluSp SINE Alu -18 295 1 652 199 58 53 chr6 18613856 18613998 -170665556 - MLT1I LTR MaLR -237 172 27 2008 129 3 0 chr6 18613998 18614292 -170665262 + AluSq SINE Alu 1 295 -18 652 199 58 53 chr6 18614292 18614320 -170665234 - MLT1I LTR MaLR -382 27 1 352 316 0 0 chr6 18614322 18614420 -170665134 + L2 LINE L2 2232 2329 -985 2127 114 3 0 chr6 18614424 18614723 -170664831 + AluSp SINE Alu 1 300 -13 618 236 211 5 chr6 18614730 18614929 -170664625 - MIR SINE MIR -14 248 9 316 316 105 42 chr6 18616061 18616251 -170663303 - MIR3 SINE MIR -6 202 1 2238 106 0 0 chr6 18616505 18616817 -170662737 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 18616942 18616964 -170662590 + AT_rich Low_complexity Low_complexity 1 22 0 700 301 59 34 chr6 18617047 18617456 -170662098 + MLT1H1 LTR MaLR 10 533 -57 1749 148 33 7 chr6 18617459 18617763 -170661791 + AluSx SINE Alu 1 312 0 1655 88 0 5 chr6 18617782 18617998 -170661556 + AluSx SINE Alu 3 217 -95 402 139 0 14 chr6 18618098 18618170 -170661384 + AluSp/q SINE Alu 235 305 -8 237 125 0 0 chr6 18618170 18618210 -170661344 - Tigger1 DNA MER2_type -170 2248 2209 * 750 202 42 12 chr6 18618197 18618365 -170661189 - Tigger1 DNA MER2_type -2245 173 1 243 308 31 23 chr6 18618468 18618598 -170660956 + L2 LINE L2 2259 2389 -925 499 188 119 0 chr6 18618865 18618923 -170660631 + MLT2B3 LTR ERVL 442 492 -62 457 88 25 0 chr6 18618923 18619003 -170660551 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 499 188 119 0 chr6 18619003 18619045 -170660509 + MLT2B3 LTR ERVL 492 554 0 5509 223 54 22 chr6 18619045 18619081 -170660473 + HERVL-B3 LTR ERVL 1 34 -5620 2052 112 7 0 chr6 18619081 18619375 -170660179 - AluSp SINE Alu -17 296 1 5509 223 54 22 chr6 18619375 18619640 -170659914 + HERVL-B3 LTR ERVL 34 289 -5365 4840 98 1 52 chr6 18619640 18620365 -170659189 - LTR12 LTR ERV1 0 688 1 5509 223 54 22 chr6 18620365 18621387 -170658167 + HERVL-B3 LTR ERVL 289 1368 -4286 427 264 160 0 chr6 18621549 18621693 -170657861 - MIR3 SINE MIR -1 207 41 183 42 0 0 chr6 18621707 18621731 -170657823 + (CA)n Simple_repeat Simple_repeat 2 25 0 1905 130 27 0 chr6 18621831 18622130 -170657424 + AluSx SINE Alu 1 307 -5 432 248 103 0 chr6 18622171 18622288 -170657266 + MIR SINE MIR 82 210 -52 371 268 67 22 chr6 18622290 18622390 -170657164 - MLT1L LTR MaLR -2 613 519 2303 88 0 3 chr6 18622390 18622695 -170656859 + AluY SINE Alu 1 304 -7 371 268 67 22 chr6 18622695 18622857 -170656697 - MLT1L LTR MaLR -96 519 228 1693 164 20 13 chr6 18624439 18624743 -170654811 - AluJb SINE Alu -6 306 1 215 293 98 24 chr6 18624807 18624889 -170654665 - L2 LINE L2 -32 3240 3153 292 359 33 0 chr6 18625092 18625184 -170654370 + MIR SINE MIR 88 182 -80 2269 84 0 3 chr6 18625874 18626170 -170653384 - AluSc SINE Alu -14 295 1 968 179 0 16 chr6 18626187 18626371 -170653183 + FRAM SINE Alu 1 176 0 1090 120 0 0 chr6 18626646 18626804 -170652750 - AluSg/x SINE Alu -17 295 138 1259 320 128 16 chr6 18626916 18627669 -170651885 + L3 LINE CR1 619 1455 -122 2188 94 0 0 chr6 18627869 18628157 -170651397 + AluSg SINE Alu 1 288 -22 1724 161 7 0 chr6 18628789 18629087 -170650467 - AluJo SINE Alu -12 300 1 1077 132 0 0 chr6 18629095 18629254 -170650300 - AluSg/x SINE Alu -20 290 132 1376 113 154 30 chr6 18629254 18629520 -170650034 - AluSg1 SINE Alu -10 299 1 257 218 333 39 chr6 18630096 18630252 -170649302 + MIR SINE MIR 53 254 -8 937 135 0 0 chr6 18630404 18630537 -170649017 + FLAM_C SINE Alu 1 133 0 382 246 62 142 chr6 18630755 18630795 -170648759 + L2 LINE L2 2675 2717 -596 2222 74 10 3 chr6 18630795 18631092 -170648462 + AluSc SINE Alu 1 299 -10 2459 62 0 3 chr6 18631092 18631401 -170648153 + AluY SINE Alu 1 308 -3 382 246 62 142 chr6 18631401 18631808 -170647746 + L2 LINE L2 2715 3087 -226 1934 129 0 14 chr6 18632040 18632360 -170647194 - AluSq SINE Alu 0 316 1 326 0 68 0 chr6 18632367 18632411 -170647143 + (TTTTC)n Simple_repeat Simple_repeat 3 49 0 1473 197 3 19 chr6 18632434 18632743 -170646811 - AluJo SINE Alu -8 304 1 2123 93 7 0 chr6 18632909 18633199 -170646355 - AluSc SINE Alu -17 292 1 1958 108 3 48 chr6 18633680 18633994 -170645560 - AluJb SINE Alu -12 300 1 423 182 45 0 chr6 18634217 18634305 -170645249 + MER69 DNA AcHobo 10 101 -1125 796 226 100 42 chr6 18634408 18634669 -170644885 + MER21B LTR ERV1 526 801 -62 373 206 93 21 chr6 18634776 18634873 -170644681 - MSTA LTR MaLR -202 226 123 2138 319 85 40 chr6 18635222 18635301 -170644253 - HERVL LTR ERVL -1442 4212 4138 1933 145 134 31 chr6 18635301 18635688 -170643866 + MSTA LTR MaLR 1 427 -1 2138 319 85 40 chr6 18635688 18636051 -170643503 - HERVL LTR ERVL -1516 4138 3793 2558 45 0 0 chr6 18636051 18636360 -170643194 - AluYa5 SINE Alu -2 309 1 2138 319 85 40 chr6 18636360 18637345 -170642209 - HERVL LTR ERVL -1861 3793 2719 848 242 58 51 chr6 18637349 18637714 -170641840 - L1MEc LINE L1 -4557 2321 1960 1830 130 6 22 chr6 18637714 18638030 -170641524 + AluSx SINE Alu 1 311 -1 848 242 58 51 chr6 18638030 18638193 -170641361 - L1MEc LINE L1 -4918 1960 1369 313 248 83 25 chr6 18638297 18638418 -170641136 - L1MEc LINE L1 -5628 1510 1383 622 330 32 16 chr6 18638672 18638987 -170640567 - L1MEc LINE L1 -5969 1169 850 2291 46 39 0 chr6 18639000 18639283 -170640271 - AluY SINE Alu -17 294 1 2039 218 32 43 chr6 18639434 18639989 -170639565 - L1ME1 LINE L1 -44 6191 5643 1667 262 75 28 chr6 18639991 18640482 -170639072 - L1ME1 LINE L1 -3167 3048 2503 1521 211 7 3 chr6 18640482 18640786 -170638768 - AluJb SINE Alu -7 305 1 1667 262 75 28 chr6 18640786 18641093 -170638461 - L1ME1 LINE L1 -3712 2503 2212 248 232 232 16 chr6 18641139 18641333 -170638221 - L1ME1 LINE L1 -4115 2281 2046 2269 77 0 35 chr6 18641334 18641644 -170637910 + AluSx SINE Alu 1 299 -13 340 250 89 109 chr6 18641927 18642163 -170637391 + L1MEd LINE L1 538 777 -5342 1591 154 14 20 chr6 18642163 18642492 -170637062 - AluSx SINE Alu 0 327 1 340 250 89 109 chr6 18642492 18642633 -170636921 + L1MEd LINE L1 777 919 -5200 1583 189 0 3 chr6 18642633 18642930 -170636624 + AluJo SINE Alu 1 296 -16 340 250 89 109 chr6 18642930 18643120 -170636434 + L1MEd LINE L1 919 1097 -5022 2062 75 0 34 chr6 18643122 18643462 -170636092 + AluY SINE Alu 1 330 0 2177 98 3 0 chr6 18643476 18643772 -170635782 + AluSq SINE Alu 1 297 -16 6694 238 34 47 chr6 18644487 18646700 -170632854 + HERVFH21 LTR ERV1 304 2412 -4117 11788 161 19 7 chr6 18646826 18649108 -170630446 + HERVFH21 LTR ERV1 2290 4665 -1864 1956 128 14 0 chr6 18649292 18649581 -170629973 - AluSg SINE Alu -17 293 1 209 255 32 106 chr6 18649593 18649660 -170629894 - L2 LINE L2 -540 2774 2714 2095 102 7 0 chr6 18649660 18649953 -170629601 - AluSx SINE Alu -17 295 1 209 255 32 106 chr6 18649953 18649979 -170629575 - L2 LINE L2 -600 2714 2688 467 327 114 48 chr6 18649980 18650374 -170629180 + L1MEd LINE L1 1 420 -5699 2371 208 29 12 chr6 18650376 18650828 -170628726 + L1ME2 LINE L1 5526 6014 -154 2002 98 3 55 chr6 18650828 18651153 -170628401 + AluY SINE Alu 2 309 -2 2371 208 29 12 chr6 18651153 18651310 -170628244 + L1ME2 LINE L1 6014 6167 -1 390 297 52 57 chr6 18651645 18651837 -170627717 - L2 LINE L2 0 3313 3123 2257 103 0 0 chr6 18651849 18652160 -170627394 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr6 18652285 18652307 -170627247 + AT_rich Low_complexity Low_complexity 1 22 0 700 301 59 34 chr6 18652390 18652799 -170626755 + MLT1H1 LTR MaLR 10 533 -57 2321 81 3 10 chr6 18652802 18653098 -170626456 + AluSp SINE Alu 2 295 -18 1942 128 28 3 chr6 18653112 18653401 -170626153 + AluSg1 SINE Alu 1 296 -13 415 246 85 15 chr6 18653417 18653547 -170626007 + MLT1I LTR MaLR 258 396 -13 240 259 86 72 chr6 18653569 18653708 -170625846 - L2 LINE L2 -1097 2217 2077 1279 156 103 43 chr6 18653709 18653870 -170625684 + MLT1A1 LTR MaLR 1 151 -214 1735 173 18 0 chr6 18653870 18654147 -170625407 + AluJo SINE Alu 4 285 -27 1279 156 103 43 chr6 18654147 18654287 -170625267 + MLT1A1 LTR MaLR 151 320 -45 864 107 0 0 chr6 18654290 18654402 -170625152 - AluSg/x SINE Alu -113 197 86 286 103 0 0 chr6 18654404 18654443 -170625111 + MLT1A1 LTR MaLR 336 374 0 1172 256 125 13 chr6 18654472 18655015 -170624539 - L2 LINE L2 -1293 2021 1418 2105 127 14 0 chr6 18655021 18655313 -170624241 - AluSx SINE Alu -16 296 1 1755 74 4 9 chr6 18655338 18655569 -170623985 - AluY SINE Alu -1 310 81 2222 114 0 7 chr6 18655946 18656254 -170623300 - AluSx SINE Alu -6 306 1 268 312 104 32 chr6 18656596 18656846 -170622708 + MLT1L LTR MaLR 302 569 -46 2265 108 0 0 chr6 18656857 18657164 -170622390 - AluY SINE Alu -4 307 1 2438 74 6 10 chr6 18657241 18657553 -170622001 - AluY SINE Alu 0 311 1 2243 128 0 0 chr6 18657575 18657880 -170621674 - AluSx SINE Alu -5 307 3 2254 248 13 6 chr6 18657928 18658476 -170621078 - L1ME1 LINE L1 -140 6026 5475 673 254 65 14 chr6 18659171 18659388 -170620166 + MIR SINE MIR 24 251 -11 277 273 0 30 chr6 18659433 18659532 -170620022 + L1ME LINE L1 5730 5825 -296 1979 80 53 4 chr6 18659764 18660026 -170619528 + AluSc SINE Alu 20 294 -15 1556 164 25 29 chr6 18660134 18660408 -170619146 + AluJo SINE Alu 11 283 -29 2473 64 3 3 chr6 18660898 18661194 -170618360 + AluSx SINE Alu 1 296 -16 24 67 0 0 chr6 18661205 18661250 -170618304 + AT_rich Low_complexity Low_complexity 1 45 0 2113 313 26 26 chr6 18662703 18663731 -170615823 + HERVFH21 LTR ERV1 5502 6529 0 801 179 105 83 chr6 18663761 18664124 -170615430 + LTR21B LTR ERV1 68 438 0 739 278 76 4 chr6 18664265 18664585 -170614969 + MLT1I LTR MaLR 21 363 -46 2104 51 94 0 chr6 18665396 18665651 -170613903 + AluY SINE Alu 1 279 -32 341 58 19 0 chr6 18665651 18665703 -170613851 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 227 278 72 10 chr6 18665755 18665852 -170613702 + L2 LINE L2 1241 1343 -1971 * 1023 291 40 24 chr6 18665848 18666270 -170613284 - L2 LINE L2 -80 3233 2805 2518 61 0 0 chr6 18666359 18666656 -170612898 + AluY SINE Alu 1 297 -14 1365 95 0 0 chr6 18666657 18666825 -170612729 + AluSg/x SINE Alu 134 301 -11 1596 150 44 47 chr6 18667001 18667136 -170612418 - MER44D DNA MER2_type -1882 609 475 2103 102 7 14 chr6 18667136 18667430 -170612124 + AluSx SINE Alu 1 292 -20 1596 150 44 47 chr6 18667430 18667534 -170612020 - MER44D DNA MER2_type -2016 475 372 180 0 0 0 chr6 18667534 18667554 -170612000 + (TC)n Simple_repeat Simple_repeat 1 20 0 1596 150 44 47 chr6 18667554 18667652 -170611902 - MER44D DNA MER2_type -2119 372 2 249 231 15 0 chr6 18667656 18667721 -170611833 - L1M4c LINE L1 -5012 1372 1307 26 0 0 0 chr6 18667724 18667750 -170611804 + AT_rich Low_complexity Low_complexity 1 26 0 1115 129 8 133 chr6 18667906 18667945 -170611609 - L1MA7 LINE L1 -115 6176 6134 1862 142 9 41 chr6 18667945 18668263 -170611291 - AluJb SINE Alu -4 308 1 1115 129 8 133 chr6 18668263 18668486 -170611068 - L1MA7 LINE L1 -157 6134 5947 1717 151 63 6 chr6 18668568 18668699 -170610855 - L1MA7 LINE L1 -360 5931 5809 198 0 0 0 chr6 18668699 18668721 -170610833 + (TG)n Simple_repeat Simple_repeat 1 22 0 1717 151 63 6 chr6 18668721 18668906 -170610648 - L1MA7 LINE L1 -482 5809 5597 190 230 223 50 chr6 18669330 18669469 -170610085 - MIR SINE MIR -47 215 53 2103 191 26 26 chr6 18669479 18669548 -170610006 - MSTB LTR MaLR -2 424 356 2368 90 0 13 chr6 18669548 18669860 -170609694 + AluY SINE Alu 1 308 -3 2103 191 26 26 chr6 18669860 18670214 -170609340 - MSTB LTR MaLR -69 357 1 2486 68 3 7 chr6 18670632 18670940 -170608614 - AluY SINE Alu -4 307 1 186 43 0 0 chr6 18671271 18671294 -170608260 + (TG)n Simple_repeat Simple_repeat 2 24 0 2123 100 3 21 chr6 18671294 18671583 -170607971 - AluY SINE Alu -27 284 1 2089 122 10 0 chr6 18672160 18672456 -170607098 + AluSx SINE Alu 1 299 -13 1195 165 78 0 chr6 18672466 18672696 -170606858 + L1MB3 LINE L1 5893 6140 -43 1451 103 5 9 chr6 18672699 18672912 -170606642 + AluY SINE Alu 1 212 -99 201 349 151 8 chr6 18673102 18673228 -170606326 - L2 LINE L2 -12 3260 3117 1526 147 23 30 chr6 18674766 18675031 -170604523 + AluJo SINE Alu 25 287 -25 629 68 91 0 chr6 18675129 18675217 -170604337 - FLAM_C SINE Alu -13 130 35 204 40 0 0 chr6 18675446 18675471 -170604083 + (TA)n Simple_repeat Simple_repeat 2 26 0 2527 59 0 0 chr6 18675471 18675761 -170603793 - AluY SINE Alu -19 292 3 1041 84 30 0 chr6 18676058 18676189 -170603365 - AluJb SINE Alu -177 135 1 34 24 0 0 chr6 18676288 18676329 -170603225 + AT_rich Low_complexity Low_complexity 1 41 0 1804 126 7 7 chr6 18676806 18677083 -170602471 - Tigger5 DNA MER2_type 0 2323 2047 2183 113 6 25 chr6 18677220 18677538 -170602016 + AluSx SINE Alu 1 312 0 2487 82 3 0 chr6 18678141 18678447 -170601107 - AluSx SINE Alu -5 307 1 2214 108 0 3 chr6 18678705 18679002 -170600552 + AluSx SINE Alu 1 296 -16 204 254 0 34 chr6 18679433 18679492 -170600062 + L2 LINE L2 3257 3313 0 651 134 0 59 chr6 18679628 18679747 -170599807 - AluSg/x SINE Alu -4 306 195 2270 102 0 28 chr6 18679920 18680242 -170599312 + AluSq SINE Alu 1 313 0 2299 187 59 17 chr6 18680275 18680734 -170598820 + MER66A LTR ERV1 1 478 0 2234 82 0 7 chr6 18681026 18681306 -170598248 - AluSc SINE Alu -8 301 24 539 100 0 0 chr6 18682090 18682160 -170597394 + AluS SINE Alu 2 71 -242 1180 139 0 0 chr6 18682160 18682333 -170597221 + AluSc SINE Alu 131 303 -6 184 336 148 18 chr6 18682405 18682628 -170596926 + L2 LINE L2 2811 3062 -210 292 220 184 137 chr6 18682879 18682985 -170596569 - MER5A DNA MER1_type 0 189 71 2241 117 0 0 chr6 18682985 18683292 -170596262 - AluSx SINE Alu -1 311 5 292 220 184 137 chr6 18683292 18683353 -170596201 - MER5A DNA MER1_type -118 71 14 226 351 8 61 chr6 18683465 18683596 -170595958 + L2 LINE L2 3141 3264 -8 2326 77 3 17 chr6 18683690 18683990 -170595564 - AluY SINE Alu -15 296 1 1974 144 0 7 chr6 18684730 18685021 -170594533 + AluJb SINE Alu 18 306 -6 2055 143 0 13 chr6 18686185 18686499 -170593055 + AluJb SINE Alu 1 310 -2 35 71 0 0 chr6 18686821 18686891 -170592663 + AT_rich Low_complexity Low_complexity 1 70 0 2231 106 0 0 chr6 18687195 18687504 -170592050 - AluSq SINE Alu 0 309 1 584 197 61 14 chr6 18687513 18687660 -170591894 - MER112 DNA MER1_type -11 249 96 1270 122 0 0 chr6 18688505 18688693 -170590861 - L1PB1 LINE L1 -2 6149 5962 354 173 40 13 chr6 18688776 18688851 -170590703 - L2 LINE L2 -2 3270 3194 2342 134 3 21 chr6 18689485 18689865 -170589689 - L1PA16 LINE L1 -1 6165 5793 2112 115 28 0 chr6 18689912 18690200 -170589354 - AluSx SINE Alu -16 296 1 2244 110 3 7 chr6 18690348 18690657 -170588897 - AluSx SINE Alu -4 308 1 2136 118 7 0 chr6 18690754 18691041 -170588513 - AluSx SINE Alu -23 289 1 23 0 0 0 chr6 18691315 18691338 -170588216 + AT_rich Low_complexity Low_complexity 1 23 0 204 237 51 0 chr6 18692522 18692581 -170586973 + MIR SINE MIR 201 262 0 203 254 16 32 chr6 18692601 18692664 -170586890 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 2001 137 0 19 chr6 18692705 18693012 -170586542 - AluJo SINE Alu -8 304 4 2188 138 0 6 chr6 18693369 18693680 -170585874 + AluSx SINE Alu 1 309 -3 792 134 6 56 chr6 18694783 18694962 -170584592 - L1MB8 LINE L1 -6 6172 6003 2241 127 15 46 chr6 18695041 18695434 -170584120 - L1MB8 LINE L1 -190 5994 5614 2291 97 10 0 chr6 18695438 18695727 -170583827 - AluSx SINE Alu -20 292 1 23 0 0 0 chr6 18695854 18695877 -170583677 + AT_rich Low_complexity Low_complexity 1 23 0 2325 86 3 26 chr6 18696068 18696370 -170583184 + AluSc SINE Alu 1 295 -14 1960 115 54 0 chr6 18698473 18698752 -170580802 - AluSx SINE Alu -18 294 1 1387 192 17 31 chr6 18698924 18699216 -170580338 + AluJo SINE Alu 1 288 -24 682 185 19 45 chr6 18699549 18699706 -170579848 - MER5B DNA MER1_type 0 178 26 391 274 211 5 chr6 18699857 18700061 -170579493 + MIR SINE MIR 17 262 0 459 239 96 16 chr6 18700252 18700382 -170579172 - MER112 DNA MER1_type -50 210 59 201 39 0 0 chr6 18700382 18700408 -170579146 + (TG)n Simple_repeat Simple_repeat 2 27 0 459 239 96 16 chr6 18700408 18700465 -170579089 - MER112 DNA MER1_type -201 59 8 347 225 63 27 chr6 18700475 18700586 -170578968 - MIR3 SINE MIR -51 157 43 576 339 16 8 chr6 18700692 18700934 -170578620 + MIR SINE MIR 13 256 -6 1550 107 154 136 chr6 18701301 18701497 -170578057 + MLT1B LTR MaLR 1 192 -198 2085 110 37 20 chr6 18701497 18701796 -170577758 - AluSq SINE Alu -9 304 1 1550 107 154 136 chr6 18701796 18701982 -170577572 + MLT1B LTR MaLR 192 390 0 266 271 42 28 chr6 18703651 18703795 -170575759 - L1ME4a LINE L1 0 6121 5976 319 28 0 0 chr6 18703813 18703849 -170575705 + U2 snRNA snRNA 1 36 -152 901 56 0 0 chr6 18704627 18704735 -170574819 + AluSc SINE Alu 172 279 -30 405 109 0 0 chr6 18704738 18704802 -170574752 + (TA)n Simple_repeat Simple_repeat 2 65 0 297 0 0 0 chr6 18705241 18705274 -170574280 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1719 134 7 11 chr6 18705274 18705550 -170574004 - AluJo SINE Alu -32 280 6 2366 95 0 0 chr6 18705702 18705998 -170573556 - AluSx SINE Alu -8 304 9 2308 67 0 3 chr6 18706094 18706420 -170573134 + AluY SINE Alu 1 325 0 837 182 0 0 chr6 18708498 18708630 -170570924 + FLAM_C SINE Alu 2 133 0 343 278 99 13 chr6 18708707 18708858 -170570696 - MER103 DNA DNA -2 164 1 2041 261 66 46 chr6 18709808 18709940 -170569614 - L2 LINE L2 -1 3312 3184 1940 194 88 50 chr6 18709940 18710441 -170569113 - MLT2B1 LTR ERVL 0 520 1 2041 261 66 46 chr6 18710441 18711264 -170568290 - L2 LINE L2 -129 3184 2326 383 267 176 0 chr6 18712191 18712378 -170567176 - L2 LINE L2 -16 3297 3078 532 302 104 31 chr6 18713246 18713468 -170566086 - MIR SINE MIR -6 256 19 2028 227 126 31 chr6 18714550 18715250 -170564304 - MER20B DNA MER1_type -12 771 6 395 284 95 0 chr6 18715287 18715403 -170564151 + L2 LINE L2 3146 3272 0 2285 114 0 0 chr6 18715664 18715971 -170563583 - AluSg SINE Alu -3 307 1 200 293 52 17 chr6 18716164 18716222 -170563332 + MIR SINE MIR 25 84 -124 238 261 62 0 chr6 18716433 18716498 -170563056 - MIR SINE MIR -76 186 118 828 197 0 14 chr6 18716915 18717062 -170562492 + AluJo SINE Alu 1 145 -167 1505 147 47 0 chr6 18717071 18717153 -170562401 + AluJo SINE Alu 39 116 -190 207 0 0 0 chr6 18717153 18717176 -170562378 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1505 147 47 0 chr6 18717176 18717350 -170562204 + AluJo SINE Alu 116 306 0 2307 77 0 3 chr6 18717352 18717670 -170561884 + AluSq SINE Alu 1 317 0 251 277 46 0 chr6 18717981 18718046 -170561508 + L2 LINE L2 3246 3313 0 1896 145 7 7 chr6 18718503 18718799 -170560755 - AluJb SINE Alu -16 296 1 818 177 0 0 chr6 18718935 18719059 -170560495 - FLAM_A SINE Alu -9 124 1 2341 195 17 25 chr6 18722220 18722585 -170556969 + MLT1C LTR MaLR 1 363 -104 2279 44 68 14 chr6 18722585 18722878 -170556676 - AluSc SINE Alu 0 309 1 2341 195 17 25 chr6 18722878 18722983 -170556571 + MLT1C LTR MaLR 363 467 0 2073 80 31 77 chr6 18724033 18724358 -170555196 + AluSq SINE Alu 2 311 -2 2540 54 0 19 chr6 18725208 18725522 -170554032 + AluY SINE Alu 1 308 -3 268 268 8 8 chr6 18725539 18725666 -170553888 + CT-rich Low_complexity Low_complexity 3 129 0 1759 174 0 36 chr6 18726677 18726981 -170552573 + AluSx SINE Alu 1 293 -19 231 120 53 27 chr6 18727065 18727140 -170552414 + (TA)n Simple_repeat Simple_repeat 2 78 0 2359 74 10 16 chr6 18727949 18728261 -170551293 + AluSx SINE Alu 1 310 -2 2428 95 0 0 chr6 18729904 18730208 -170549346 - AluSg SINE Alu -6 304 1 225 0 0 0 chr6 18730912 18730937 -170548617 + (A)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr6 18731164 18731192 -170548362 + AT_rich Low_complexity Low_complexity 1 28 0 2843 3 0 0 chr6 18732769 18733070 -170546484 - AluYa5 SINE Alu -10 301 1 2490 54 3 0 chr6 18733277 18733572 -170545982 - AluY SINE Alu -15 296 1 714 271 200 8 chr6 18734358 18734723 -170544831 + MLT1J1 LTR MaLR 10 444 -2 471 226 0 9 chr6 18734765 18734871 -170544683 - MIR SINE MIR -70 192 88 226 356 0 14 chr6 18735010 18735083 -170544471 - MIR SINE MIR -177 85 14 414 53 0 0 chr6 18735675 18735732 -170543822 + (CA)n Simple_repeat Simple_repeat 2 58 0 180 0 0 0 chr6 18736072 18736092 -170543462 + (AGGTG)n Simple_repeat Simple_repeat 1 20 0 408 228 162 15 chr6 18736598 18736734 -170542820 - MER112 DNA MER1_type -8 252 97 3180 99 11 38 chr6 18736994 18737300 -170542254 + L1MA2 LINE L1 5843 6133 -171 2143 118 0 3 chr6 18737300 18737596 -170541958 + AluSg SINE Alu 1 295 -15 3180 99 11 38 chr6 18737596 18737764 -170541790 + L1MA2 LINE L1 6133 6304 0 977 119 7 7 chr6 18737809 18737952 -170541602 - MLT1E3 LTR MaLR -2 622 480 432 274 0 35 chr6 18738206 18738319 -170541235 + MLT1I LTR MaLR 292 400 -9 612 223 153 0 chr6 18738420 18738577 -170540977 + MER5A DNA MER1_type 9 189 0 954 186 11 0 chr6 18738670 18738847 -170540707 + MER5A DNA MER1_type 11 189 0 2809 156 4 24 chr6 18739054 18739521 -170540033 + LTR32 LTR ERVL 14 471 0 862 207 18 35 chr6 18739769 18739938 -170539616 + FRAM SINE Alu 1 166 0 689 290 0 0 chr6 18740475 18740637 -170538917 + MER5B DNA MER1_type 11 172 -6 24 0 0 0 chr6 18740820 18740844 -170538710 + AT_rich Low_complexity Low_complexity 1 24 0 377 273 40 0 chr6 18741402 18741501 -170538053 + MER5A DNA MER1_type 26 128 -61 3256 161 29 11 chr6 18742177 18742736 -170536818 + L1MB8 LINE L1 5610 6178 0 2590 61 0 3 chr6 18743100 18743412 -170536142 - AluY SINE Alu 0 311 1 25 0 0 0 chr6 18743415 18743440 -170536114 + AT_rich Low_complexity Low_complexity 1 25 0 2011 143 0 23 chr6 18743596 18743904 -170535650 + AluSx SINE Alu 1 301 -11 1990 155 0 3 chr6 18743947 18744256 -170535298 - AluJo SINE Alu -3 309 2 2312 238 125 29 chr6 18744394 18745321 -170534233 - HAL1b LINE L1 -290 1058 43 206 219 0 0 chr6 18746203 18746244 -170533310 + CT-rich Low_complexity Low_complexity 2 42 0 922 192 68 0 chr6 18748868 18749045 -170530509 - MER5A DNA MER1_type 0 189 1 3815 148 42 23 chr6 18749144 18749288 -170530266 - MER50 LTR ERV1 -23 711 571 2439 75 0 0 chr6 18749288 18749583 -170529971 + AluY SINE Alu 1 295 -16 3815 148 42 23 chr6 18749583 18750136 -170529418 - MER50 LTR ERV1 -163 571 1 187 356 159 38 chr6 18750162 18750294 -170529260 - MIR3 SINE MIR -42 166 19 210 302 62 0 chr6 18750783 18750879 -170528675 + L2 LINE L2 2791 2892 -422 1702 127 46 81 chr6 18750913 18751236 -170528318 + AluJb SINE Alu 1 312 0 185 327 83 71 chr6 18751384 18751552 -170528002 + L2 LINE L2 3073 3242 -30 273 254 112 37 chr6 18753112 18753246 -170526308 + L1ME4a LINE L1 5977 6120 -1 2317 88 0 0 chr6 18753313 18753608 -170525946 + AluSx SINE Alu 1 295 -17 197 233 96 68 chr6 18753610 18753683 -170525871 - L2 LINE L2 -19 3253 3179 24 0 0 0 chr6 18753867 18753891 -170525663 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 18754454 18754476 -170525078 + AT_rich Low_complexity Low_complexity 1 22 0 2398 71 3 0 chr6 18754773 18755067 -170524487 + AluY SINE Alu 1 295 -16 335 267 73 63 chr6 18755276 18755414 -170524140 + L1ME4a LINE L1 5538 5680 -2128 2224 117 0 7 chr6 18755414 18755723 -170523831 + AluSq SINE Alu 1 307 -6 335 267 73 63 chr6 18755723 18755790 -170523764 + L1ME4a LINE L1 5680 5745 -2063 237 315 14 0 chr6 18755838 18755911 -170523643 - MER96 DNA MER1_type? 0 175 102 295 275 6 75 chr6 18755993 18756061 -170523493 + L1ME4a LINE L1 5761 5832 -289 2249 96 10 0 chr6 18756061 18756354 -170523200 + AluSq SINE Alu 1 296 -17 295 275 6 75 chr6 18756354 18756445 -170523109 + L1ME4a LINE L1 5832 5909 -212 232 362 79 2 chr6 18757169 18757325 -170522229 + MIR SINE MIR 4 179 -83 2160 113 3 0 chr6 18757325 18757617 -170521937 + AluSx SINE Alu 1 293 -19 232 362 79 2 chr6 18757617 18757702 -170521852 + MIR SINE MIR 179 256 -6 1302 154 90 79 chr6 18757803 18758082 -170521472 + AluJo SINE Alu 1 282 -30 295 260 96 34 chr6 18758406 18758552 -170521002 - L1ME4a LINE L1 -4 6117 5963 776 197 98 38 chr6 18758965 18759229 -170520325 - MER5C DNA MER1_type -1 323 44 2162 122 0 0 chr6 18759716 18760002 -170519552 + AluSx SINE Alu 1 286 -26 360 0 0 0 chr6 18760278 18760318 -170519236 + (TG)n Simple_repeat Simple_repeat 1 40 0 2376 86 0 13 chr6 18760464 18760766 -170518788 - AluSc SINE Alu -11 298 1 22 0 0 0 chr6 18761108 18761130 -170518424 + AT_rich Low_complexity Low_complexity 1 22 0 219 36 0 0 chr6 18761528 18761556 -170517998 + (TG)n Simple_repeat Simple_repeat 2 29 0 995 186 6 0 chr6 18761854 18762021 -170517533 - FRAM SINE Alu -12 164 1 2060 133 3 0 chr6 18762106 18762399 -170517155 + AluSx SINE Alu 1 294 -18 708 188 0 0 chr6 18762399 18762516 -170517038 - AluJo/FLAM SINE Alu -194 118 2 22 0 0 0 chr6 18763177 18763199 -170516355 + AT_rich Low_complexity Low_complexity 1 22 0 2014 139 0 7 chr6 18763338 18763632 -170515922 + AluJb SINE Alu 1 292 -20 26 0 0 0 chr6 18763733 18763759 -170515795 + AT_rich Low_complexity Low_complexity 1 26 0 635 300 111 46 chr6 18763930 18764086 -170515468 + L1MC4a LINE L1 3810 3955 -2191 2857 69 0 0 chr6 18764086 18764446 -170515108 + L1PA6 LINE L1 5789 6148 -6 635 300 111 46 chr6 18764446 18764477 -170515077 + L1MC4a LINE L1 3955 3983 -2163 311 0 26 0 chr6 18764477 18764516 -170515038 + (CA)n Simple_repeat Simple_repeat 1 40 0 635 300 111 46 chr6 18764516 18765192 -170514362 + L1MC4a LINE L1 3983 4771 -1375 2749 126 139 30 chr6 18765192 18765667 -170513887 + MER1A DNA MER1_type 1 527 0 635 300 111 46 chr6 18765667 18765965 -170513589 + L1MC4a LINE L1 4771 5048 -1098 2348 108 0 0 chr6 18765986 18766291 -170513263 - AluSg SINE Alu -4 306 2 2405 92 0 3 chr6 18766384 18766689 -170512865 + AluY SINE Alu 1 304 -7 2291 106 0 0 chr6 18766736 18767037 -170512517 - AluSg SINE Alu -9 301 1 1035 241 48 40 chr6 18767113 18767232 -170512322 + L1MC4a LINE L1 5254 5371 -2437 2179 112 0 14 chr6 18767232 18767526 -170512028 - AluSg SINE Alu -20 290 1 1035 241 48 40 chr6 18767526 18767784 -170511770 + L1MC4a LINE L1 5371 5634 -2174 304 162 44 15 chr6 18767788 18767856 -170511698 + LTR33 LTR ERVL 16 85 -436 3578 102 12 8 chr6 18767859 18768341 -170511213 - MER1A DNA MER1_type 0 529 46 493 247 58 54 chr6 18768303 18768685 -170510869 + LTR33 LTR ERVL 34 479 -42 * 1944 128 7 35 chr6 18768690 18768978 -170510576 + AluSx SINE Alu 1 280 -32 546 91 0 0 chr6 18768978 18769055 -170510499 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 781 231 129 0 chr6 18769156 18769381 -170510173 + L1MC4a LINE L1 5618 5871 -1937 8206 3 0 0 chr6 18769428 18770327 -170509227 - L1HS LINE L1 0 6155 5257 476 213 109 11 chr6 18770321 18770495 -170509059 + L1MC4a LINE L1 5860 6050 -1758 * 2390 109 0 0 chr6 18770594 18770906 -170508648 + AluSx SINE Alu 1 312 0 220 270 70 78 chr6 18771992 18772107 -170507447 + MIR SINE MIR 28 141 -67 340 116 14 29 chr6 18772134 18772203 -170507351 + (GGGA)n Simple_repeat Simple_repeat 1 68 0 282 235 5 53 chr6 18772185 18772372 -170507182 + GA-rich Low_complexity Low_complexity 2 179 0 * 34 0 0 0 chr6 18773764 18773798 -170505756 + AT_rich Low_complexity Low_complexity 1 34 0 1626 141 8 0 chr6 18773803 18774059 -170505495 - L1PA15 LINE L1 -3 6162 5905 2411 84 0 0 chr6 18774286 18774582 -170504972 + AluSg SINE Alu 1 296 -14 221 182 0 30 chr6 18775367 18775433 -170504121 + CT-rich Low_complexity Low_complexity 1 64 0 2250 4 0 0 chr6 18776337 18776583 -170502971 - L1PA2 LINE L1 -2 6153 5908 186 279 16 16 chr6 18776874 18776935 -170502619 + L3 LINE CR1 1516 1576 -1 4146 146 42 3 chr6 18776969 18777666 -170501888 - L1MB2 LINE L1 -7 6164 5441 645 289 141 13 chr6 18777718 18778241 -170501313 + L2 LINE L2 2683 3273 -40 2296 101 3 10 chr6 18778588 18778896 -170500658 + AluSx SINE Alu 1 306 -6 1857 157 7 0 chr6 18778993 18779308 -170500246 - AluSx SINE Alu 0 319 3 2443 48 3 7 chr6 18780707 18780999 -170498555 - AluY SINE Alu -16 295 5 23 0 0 0 chr6 18781027 18781050 -170498504 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 18781349 18781374 -170498180 + AT_rich Low_complexity Low_complexity 1 25 0 748 156 21 94 chr6 18782081 18782273 -170497281 - MER53 DNA DNA 0 189 12 21 57 0 0 chr6 18782273 18782308 -170497246 + AT_rich Low_complexity Low_complexity 1 35 0 2353 106 0 0 chr6 18782474 18782776 -170496778 + AluY SINE Alu 1 302 -9 951 172 0 0 chr6 18783076 18783227 -170496327 + FRAM SINE Alu 1 151 -25 3380 86 8 15 chr6 18783725 18784203 -170495351 - L1PB2 LINE L1 -1 6150 5676 23 0 0 0 chr6 18784733 18784756 -170494798 + AT_rich Low_complexity Low_complexity 1 23 0 2412 94 3 0 chr6 18784953 18785262 -170494292 + AluSg SINE Alu 1 310 0 1293 116 0 0 chr6 18785262 18785434 -170494120 + AluSg/x SINE Alu 124 295 -17 2009 143 3 0 chr6 18787548 18787848 -170491706 + AluJb SINE Alu 1 301 -11 1464 204 10 23 chr6 18788011 18788310 -170491244 - AluJo SINE Alu -15 297 3 733 254 135 55 chr6 18788316 18788701 -170490853 - HAL1 LINE L1 0 2507 2092 6105 72 2 19 chr6 18790052 18790859 -170488695 + L1PA8A LINE L1 5338 6131 0 2333 104 0 0 chr6 18791054 18791351 -170488203 - AluSx SINE Alu -15 297 1 3532 186 25 11 chr6 18793434 18794143 -170485411 + L1MB7 LINE L1 5254 5972 -212 2134 80 45 11 chr6 18794264 18794550 -170485004 + AluY SINE Alu 1 296 -15 348 233 113 63 chr6 18794716 18794875 -170484679 - MER5A DNA MER1_type -22 167 1 2240 110 0 0 chr6 18795742 18796033 -170483521 - AluSx SINE Alu -21 291 1 2330 78 3 29 chr6 18796154 18796462 -170483092 + AluY SINE Alu 1 300 -11 1744 138 70 121 chr6 18796572 18797027 -170482527 + MSTB1 LTR MaLR 1 432 0 2287 107 0 7 chr6 18797320 18797628 -170481926 - AluSx SINE Alu -6 306 1 1085 154 0 12 chr6 18797629 18797798 -170481756 - FRAM SINE Alu -15 161 1 2238 108 7 0 chr6 18798431 18798728 -170480826 + AluSg SINE Alu 1 299 -11 298 295 179 12 chr6 18798873 18799046 -170480508 + L1ME LINE L1 244 445 -5625 1984 153 0 0 chr6 18799082 18799376 -170480178 + AluJo SINE Alu 1 294 -18 185 0 0 39 chr6 18799395 18799421 -170480133 + (TAAAAA)n Simple_repeat Simple_repeat 4 28 0 1789 139 41 44 chr6 18799494 18799592 -170479962 + MER44D DNA MER2_type 2 99 -2392 288 0 0 0 chr6 18799592 18799624 -170479930 + (GA)n Simple_repeat Simple_repeat 1 32 0 1789 139 41 44 chr6 18799624 18799728 -170479826 + MER44D DNA MER2_type 99 202 -2289 2090 105 7 14 chr6 18799728 18800022 -170479532 - AluSx SINE Alu -20 292 1 1789 139 41 44 chr6 18800022 18800157 -170479397 + MER44D DNA MER2_type 202 609 0 2335 95 0 16 chr6 18800333 18800502 -170479052 - AluSg SINE Alu -11 299 136 2503 64 0 0 chr6 18800502 18800799 -170478755 - AluY SINE Alu -14 297 1 2335 95 0 16 chr6 18800799 18800933 -170478621 - AluSg SINE Alu -174 136 1 1470 217 92 41 chr6 18801105 18801720 -170477834 - Charlie2 DNA MER1_type 0 2862 2164 2296 106 0 3 chr6 18801720 18802032 -170477522 + AluSx SINE Alu 1 311 -1 1470 217 92 41 chr6 18802032 18802170 -170477384 - Charlie2 DNA MER1_type -698 2164 2034 1048 199 143 56 chr6 18802215 18802607 -170476947 + LTR37A LTR ERV1 1 426 0 350 248 17 26 chr6 18802607 18802722 -170476832 - Charlie2 DNA MER1_type -892 1970 1857 569 284 38 54 chr6 18802831 18803092 -170476462 - Charlie2 DNA MER1_type -2525 257 1 2021 131 64 12 chr6 18803695 18804038 -170475516 - MLT1A1 LTR MaLR -4 361 1 2504 70 0 7 chr6 18804239 18804541 -170475013 - AluY SINE Alu -11 300 1 186 43 0 0 chr6 18804871 18804894 -170474660 + (TG)n Simple_repeat Simple_repeat 2 24 0 2123 100 3 21 chr6 18804894 18805183 -170474371 - AluY SINE Alu -27 284 1 2082 118 10 0 chr6 18805760 18806056 -170473498 + AluSx SINE Alu 1 299 -13 1230 166 68 26 chr6 18806066 18806299 -170473255 + L1MB3 LINE L1 5893 6140 -43 2469 71 0 0 chr6 18806299 18806594 -170472960 + AluY SINE Alu 1 295 -16 1230 166 68 26 chr6 18806594 18806625 -170472929 + L1MB3 LINE L1 6140 6168 -15 474 256 36 23 chr6 18807213 18807395 -170472159 + L1P4 LINE L1 5641 5824 -341 2575 52 0 3 chr6 18807402 18807710 -170471844 - AluY SINE Alu -4 307 1 2137 117 0 0 chr6 18807763 18808054 -170471500 + AluSx SINE Alu 1 291 -21 5208 162 11 13 chr6 18808278 18809266 -170470288 - L1MB8 LINE L1 0 6178 5195 1097 229 84 37 chr6 18809600 18809923 -170469631 + MER58B DNA MER1_type 3 340 -1 29 60 0 0 chr6 18811004 18811054 -170468500 + GC_rich Low_complexity Low_complexity 1 50 0 216 258 11 70 chr6 18811158 18811344 -170468210 + C-rich Low_complexity Low_complexity 3 177 0 202 330 0 23 chr6 18811564 18811652 -170467902 + G-rich Low_complexity Low_complexity 4 89 0 184 188 62 42 chr6 18812609 18812657 -170466897 + L2 LINE L2 3224 3272 0 227 281 116 58 chr6 18813574 18813695 -170465859 + L2 LINE L2 3176 3303 -10 3449 188 20 40 chr6 18814295 18814713 -170464841 - MER44D DNA MER2_type -1882 705 280 2581 120 72 8 chr6 18814713 18815113 -170464441 - MSTA LTR MaLR -2 426 1 3449 188 20 40 chr6 18815113 18815196 -170464358 - MER44D DNA MER2_type -2307 280 197 1427 157 36 5 chr6 18815196 18815419 -170464135 + MER30 DNA MER1_type 1 230 0 3449 188 20 40 chr6 18815419 18815618 -170463936 - MER44D DNA MER2_type -2390 197 18 2834 7 0 0 chr6 18816013 18816314 -170463240 - AluYa5 SINE Alu -9 302 2 180 0 0 0 chr6 18816764 18816784 -170462770 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2243 84 0 0 chr6 18816788 18817062 -170462492 - AluY SINE Alu -37 274 1 2165 99 7 20 chr6 18817582 18817884 -170461670 + AluSx SINE Alu 1 298 -14 202 159 0 23 chr6 18818103 18818147 -170461407 + L2 LINE L2 3267 3309 -4 2563 65 0 0 chr6 18818689 18818999 -170460555 + AluY SINE Alu 1 310 -1 1795 171 34 0 chr6 18819428 18819756 -170459798 + L1MA7 LINE L1 5926 6264 -27 607 156 0 0 chr6 18819802 18819892 -170459662 + Tigger5 DNA MER2_type 2234 2323 0 566 176 0 8 chr6 18819937 18820062 -170459492 + CT-rich Low_complexity Low_complexity 4 127 0 1987 165 0 0 chr6 18820087 18820390 -170459164 - AluJb SINE Alu -9 303 1 191 35 0 35 chr6 18820390 18820419 -170459135 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 1684 188 30 0 chr6 18820419 18820717 -170458837 - AluJo SINE Alu -5 307 1 2294 89 7 0 chr6 18821557 18821849 -170457705 + AluSc SINE Alu 1 294 -15 1515 195 3 20 chr6 18822015 18822441 -170457113 + AluJo SINE Alu 1 421 0 2078 122 0 14 chr6 18822448 18822768 -170456786 + AluSq SINE Alu 1 316 0 2459 87 0 0 chr6 18823780 18824089 -170455465 - AluSx SINE Alu -3 309 1 1783 184 7 0 chr6 18824238 18824542 -170455012 + AluJb SINE Alu 1 306 -6 306 269 27 81 chr6 18824588 18824774 -170454780 + MER3 DNA MER1_type 34 209 0 1863 181 0 0 chr6 18824909 18825212 -170454342 + AluJb SINE Alu 3 305 -7 2404 57 0 0 chr6 18825326 18825607 -170453947 - AluY SINE Alu -15 296 16 1694 251 62 33 chr6 18825629 18826180 -170453374 - L1ME1 LINE L1 -4 6162 5596 1116 159 0 11 chr6 18826184 18826360 -170453194 - AluSg/x SINE Alu -10 300 127 726 247 0 0 chr6 18826361 18826523 -170453031 - L1ME1 LINE L1 -577 5589 5428 1962 162 0 0 chr6 18826577 18826874 -170452680 - AluSx SINE Alu -13 299 3 264 30 0 0 chr6 18827307 18827340 -170452214 + (TG)n Simple_repeat Simple_repeat 2 34 0 486 135 109 7 chr6 18827352 18827473 -170452081 + L1ME LINE L1 5365 5495 -675 2434 39 0 0 chr6 18827484 18827817 -170451737 + AluY SINE Alu 3 335 0 869 149 44 135 chr6 18827856 18827955 -170451599 - L1 LINE L1 -2059 4087 3981 1797 163 0 46 chr6 18827955 18828281 -170451273 - AluJb SINE Alu 0 312 2 869 149 44 135 chr6 18828281 18828305 -170451249 - L1 LINE L1 -2165 3981 3956 207 0 0 0 chr6 18828305 18828328 -170451226 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2241 70 0 21 chr6 18828333 18828619 -170450935 - AluY SINE Alu -31 280 1 869 149 44 135 chr6 18828619 18828784 -170450770 - L1 LINE L1 -2194 3952 3819 2331 82 3 0 chr6 18828802 18829084 -170450470 - AluSg SINE Alu -27 283 1 1011 188 45 55 chr6 18829587 18829675 -170449879 - MER33 DNA MER1_type -2261 324 237 2221 101 3 26 chr6 18829675 18829982 -170449572 + AluSx SINE Alu 1 300 -12 1011 188 45 55 chr6 18829982 18830202 -170449352 - MER33 DNA MER1_type -2348 237 19 2013 121 0 21 chr6 18830546 18830858 -170448696 - AluSg SINE Alu 0 306 1 1843 133 61 0 chr6 18830862 18831141 -170448413 - AluSq SINE Alu -17 296 1 268 53 26 0 chr6 18831266 18831304 -170448250 - MADE1 DNA Mariner 0 80 42 870 226 5 16 chr6 18831328 18831518 -170448036 + MER69 DNA AcHobo 21 208 -2318 554 176 73 39 chr6 18831518 18831723 -170447831 + Charlie5 DNA MER1_type 2407 2618 0 2748 250 27 47 chr6 18831860 18832214 -170447340 + MER69 DNA AcHobo 242 601 -1925 1660 183 3 14 chr6 18832214 18832532 -170447022 + AluJb SINE Alu 1 315 0 2748 250 27 47 chr6 18832532 18832779 -170446775 + MER69 DNA AcHobo 601 830 -1696 2307 105 0 10 chr6 18832779 18833092 -170446462 - AluSx SINE Alu -2 310 1 2748 250 27 47 chr6 18833092 18833196 -170446358 + MER69 DNA AcHobo 830 935 -1591 623 254 30 5 chr6 18833194 18833395 -170446159 + MER69 DNA AcHobo 2156 2361 -165 * 6204 94 4 34 chr6 18833461 18834041 -170445513 + L1PB2 LINE L1 5214 5810 -341 2354 103 0 0 chr6 18834041 18834341 -170445213 + AluSq SINE Alu 1 300 -13 6204 94 4 34 chr6 18834341 18834596 -170444958 + L1PB2 LINE L1 5810 6019 -132 2300 82 0 3 chr6 18834596 18834888 -170444666 + AluY SINE Alu 2 292 -19 6204 94 4 34 chr6 18834888 18835014 -170444540 + L1PB2 LINE L1 6019 6147 -4 249 195 39 0 chr6 18835035 18835112 -170444442 + (TTATA)n Simple_repeat Simple_repeat 5 84 0 406 184 22 50 chr6 18835128 18835307 -170444247 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 235 279 38 32 chr6 18835317 18835475 -170444079 - L1MCc LINE L1 -4983 1440 1282 2187 174 61 9 chr6 18835543 18835986 -170443568 - Cheshire DNA MER1_type 0 2420 1955 1183 219 29 0 chr6 18835989 18836231 -170443323 - Cheshire DNA MER1_type -622 1798 1550 4156 216 41 71 chr6 18836234 18837631 -170441923 + L1M4 LINE L1 3031 4378 -1768 2389 80 6 13 chr6 18837631 18837943 -170441611 - AluY SINE Alu -1 310 1 4156 216 41 71 chr6 18837943 18838105 -170441449 + L1M4 LINE L1 4378 4543 -1603 1190 176 83 31 chr6 18838105 18838227 -170441327 - MER2 DNA MER2_type 0 345 231 983 177 6 12 chr6 18838227 18838415 -170441139 + FRAM SINE Alu 1 52 0 1190 176 83 31 chr6 18838415 18838580 -170440974 - MER2 DNA MER2_type -114 231 41 1155 186 32 20 chr6 18838672 18838920 -170440634 + L1M4 LINE L1 4539 4789 -1357 735 255 64 15 chr6 18838931 18839135 -170440419 - MER58A DNA MER1_type 0 224 11 1171 200 102 98 chr6 18839146 18839418 -170440136 + L1M4 LINE L1 4795 5071 -1075 2255 113 3 0 chr6 18839418 18839718 -170439836 + AluSx SINE Alu 1 301 -11 1171 200 102 98 chr6 18839718 18839934 -170439620 + L1M4 LINE L1 5071 5285 -861 492 98 0 0 chr6 18839937 18839998 -170439556 + Alu SINE Alu 2 62 -248 2122 123 0 0 chr6 18840100 18840385 -170439169 - AluSx SINE Alu -27 285 1 287 234 0 2 chr6 18840385 18840450 -170439104 + MLT1G LTR MaLR 532 590 0 2395 74 0 43 chr6 18840810 18841135 -170438419 + AluY SINE Alu 1 311 0 2511 66 3 0 chr6 18841562 18841865 -170437689 - AluSp SINE Alu -9 304 1 2240 113 0 3 chr6 18842194 18842494 -170437060 + AluSq SINE Alu 2 300 -13 2611 54 0 10 chr6 18842926 18843240 -170436314 + AluY SINE Alu 1 311 0 2198 103 0 3 chr6 18844235 18844526 -170435028 + AluSc SINE Alu 1 290 -19 1825 156 11 3 chr6 18844557 18844839 -170434715 - AluJb SINE Alu -26 286 3 3197 116 15 48 chr6 18844845 18845016 -170434538 - L1MA4 LINE L1 -3 6297 6122 2471 51 0 0 chr6 18845016 18845308 -170434246 - AluY SINE Alu -19 292 1 3197 116 15 48 chr6 18845308 18845655 -170433899 - L1MA4 LINE L1 -178 6122 5796 377 209 23 8 chr6 18845657 18845786 -170433768 + CT-rich Low_complexity Low_complexity 5 135 0 185 103 77 0 chr6 18845787 18845826 -170433728 + C-rich Low_complexity Low_complexity 5 46 0 1007 191 0 0 chr6 18845837 18846015 -170433539 - AluJb SINE Alu -1 311 134 1466 113 154 30 chr6 18846015 18846281 -170433273 - AluSg1 SINE Alu -10 299 1 232 218 333 39 chr6 18846857 18847013 -170432541 + MIR SINE MIR 53 254 -8 1014 128 0 0 chr6 18847165 18847298 -170432256 + FLAM_C SINE Alu 1 133 0 2492 55 3 7 chr6 18847556 18847864 -170431690 + AluY SINE Alu 1 307 -4 2288 184 26 26 chr6 18848282 18848636 -170430918 + MSTB LTR MaLR 1 357 -69 2376 86 0 13 chr6 18848636 18848949 -170430605 - AluY SINE Alu -2 309 1 2288 184 26 26 chr6 18848949 18849018 -170430536 + MSTB LTR MaLR 356 424 -2 227 230 223 50 chr6 18849028 18849167 -170430387 + MIR SINE MIR 53 215 -47 1716 151 63 6 chr6 18849591 18849776 -170429778 + L1MA7 LINE L1 5597 5809 -482 198 0 0 0 chr6 18849776 18849798 -170429756 + (CA)n Simple_repeat Simple_repeat 1 22 0 1716 151 63 6 chr6 18849798 18849929 -170429625 + L1MA7 LINE L1 5809 5931 -360 1994 124 5 93 chr6 18850011 18850234 -170429320 + L1MA7 LINE L1 5947 6125 -166 1842 146 9 35 chr6 18850234 18850550 -170429004 + AluJb SINE Alu 1 308 -4 1994 124 5 93 chr6 18850550 18850704 -170428850 + L1MA7 LINE L1 6125 6291 0 1541 185 7 27 chr6 18852571 18852688 -170426866 + AluJb SINE Alu 21 139 -173 2120 106 0 0 chr6 18852688 18852961 -170426593 + AluSg SINE Alu 1 273 -37 1541 185 7 27 chr6 18852961 18853140 -170426414 + AluJb SINE Alu 139 311 -1 2211 105 3 25 chr6 18853732 18854046 -170425508 + AluSx SINE Alu 5 311 -1 328 188 0 0 chr6 18854239 18854303 -170425251 - L1MC4 LINE L1 -1339 6703 6640 1981 92 27 44 chr6 18854305 18854599 -170424955 - AluY SINE Alu -22 289 1 250 294 55 18 chr6 18854614 18854723 -170424831 - MIR SINE MIR -25 237 125 2487 73 0 0 chr6 18854745 18855047 -170424507 + AluY SINE Alu 1 302 -9 22 0 0 0 chr6 18855454 18855476 -170424078 + AT_rich Low_complexity Low_complexity 1 22 0 203 184 0 0 chr6 18857255 18857293 -170422261 + (CAG)n Simple_repeat Simple_repeat 3 40 0 198 103 0 0 chr6 18857402 18857431 -170422123 + (CAG)n Simple_repeat Simple_repeat 3 31 0 24 0 0 0 chr6 18858160 18858184 -170421370 + AT_rich Low_complexity Low_complexity 1 24 0 246 308 100 0 chr6 18860796 18860916 -170418638 + MIR SINE MIR 117 248 -14 519 290 30 56 chr6 18861105 18861355 -170418199 + MIR SINE MIR 5 257 -5 2391 68 3 26 chr6 18861494 18861805 -170417749 - AluY SINE Alu -7 304 1 22 0 0 0 chr6 18863118 18863140 -170416414 + AT_rich Low_complexity Low_complexity 1 22 0 329 318 38 14 chr6 18865449 18865590 -170413964 + MIR3 SINE MIR 59 204 -4 2353 88 3 0 chr6 18865609 18865905 -170413649 + AluSq SINE Alu 1 297 -16 24 32 0 0 chr6 18866690 18866721 -170412833 + GC_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 18866858 18866888 -170412666 + GC_rich Low_complexity Low_complexity 1 30 0 249 175 16 32 chr6 18868017 18868080 -170411474 + G-rich Low_complexity Low_complexity 2 63 0 27 0 0 0 chr6 18868383 18868410 -170411144 + GC_rich Low_complexity Low_complexity 1 27 0 21 82 0 0 chr6 18868512 18868561 -170410993 + GC_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr6 18868589 18868614 -170410940 + GC_rich Low_complexity Low_complexity 1 25 0 417 228 66 30 chr6 18872843 18873010 -170406544 - L1ME4a LINE L1 -2 6119 5947 340 318 7 47 chr6 18873085 18873233 -170406321 - L1MC4a LINE L1 -1979 5829 5688 270 0 0 0 chr6 18873236 18873266 -170406288 + (TA)n Simple_repeat Simple_repeat 2 31 0 2412 86 0 0 chr6 18873266 18873567 -170405987 - AluSq SINE Alu -12 301 1 5516 91 12 43 chr6 18873575 18874458 -170405096 - L1PA15 LINE L1 -6 6159 5250 2216 105 0 3 chr6 18874458 18874753 -170404801 - AluSx SINE Alu -14 298 5 5516 91 12 43 chr6 18874753 18875881 -170403673 - L1PA15 LINE L1 -915 5250 4231 4004 114 44 8 chr6 18875903 18876003 -170403551 - LTR9 LTR ERV1 0 612 517 180 0 0 0 chr6 18876003 18876023 -170403531 + (GAGAA)n Simple_repeat Simple_repeat 2 21 0 4004 114 44 8 chr6 18876023 18876511 -170403043 - LTR9 LTR ERV1 -95 517 3 523 192 158 0 chr6 18876526 18876646 -170402908 + L2 LINE L2 3175 3313 0 368 277 31 8 chr6 18876667 18876797 -170402757 - L1MC4a LINE L1 -496 5625 5493 2232 94 40 0 chr6 18876820 18877119 -170402435 + AluY SINE Alu 1 311 0 372 284 59 54 chr6 18877122 18877190 -170402364 - MLT1K LTR MaLR -17 571 505 2417 168 16 12 chr6 18877190 18877614 -170401940 + MSTB LTR MaLR 1 426 0 372 284 59 54 chr6 18877614 18877784 -170401770 - MLT1K LTR MaLR -83 505 332 36 23 0 0 chr6 18878166 18878209 -170401345 + AT_rich Low_complexity Low_complexity 1 43 0 303 313 40 0 chr6 18878356 18878455 -170401099 - MIR3 SINE MIR -48 160 58 951 204 65 18 chr6 18878487 18878659 -170400895 - L1ME3 LINE L1 0 6162 5971 396 0 0 0 chr6 18878659 18878703 -170400851 + (CA)n Simple_repeat Simple_repeat 2 45 0 951 204 65 18 chr6 18878703 18878809 -170400745 - L1ME3 LINE L1 -191 5971 5871 1117 254 64 15 chr6 18878854 18879184 -170400370 - LTR16A LTR ERVL -104 346 1 514 345 42 41 chr6 18879345 18879424 -170400130 - ERVL LTR ERVL -441 5323 5246 2070 140 7 94 chr6 18879424 18879859 -170399695 - MLT2C1 LTR ERVL 0 397 1 514 345 42 41 chr6 18879859 18880321 -170399233 - ERVL LTR ERVL -518 5246 4781 2313 227 111 29 chr6 18880360 18881088 -170398466 + MER21B LTR ERV1 14 801 -62 332 206 93 21 chr6 18881195 18881292 -170398262 - MSTA LTR MaLR -202 226 123 1653 327 82 37 chr6 18881660 18881720 -170397834 - ERVL LTR ERVL -1462 4192 4136 1890 145 134 31 chr6 18881720 18882107 -170397447 + MSTA LTR MaLR 1 427 -1 1653 327 82 37 chr6 18882107 18882470 -170397084 - ERVL LTR ERVL -1518 4136 3791 2723 29 0 0 chr6 18882470 18882777 -170396777 - AluYa5 SINE Alu -4 307 1 1653 327 82 37 chr6 18882777 18883762 -170395792 - ERVL LTR ERVL -1863 3791 2719 796 249 52 42 chr6 18883766 18884131 -170395423 - L1MEc LINE L1 -4981 1966 1527 1929 130 6 22 chr6 18884131 18884447 -170395107 + AluSx SINE Alu 1 311 -1 796 249 52 42 chr6 18884447 18884600 -170394954 - L1MEc LINE L1 -5420 1527 1377 550 339 32 0 chr6 18885154 18885405 -170394149 - L1MEc LINE L1 -6030 1108 850 2374 46 39 0 chr6 18885418 18885701 -170393853 - AluY SINE Alu -17 294 1 1852 223 31 41 chr6 18885852 18886407 -170393147 - L1ME1 LINE L1 -44 6516 5968 1530 260 74 27 chr6 18886409 18886900 -170392654 - L1ME1 LINE L1 -3167 3373 2830 1651 211 7 3 chr6 18886900 18887204 -170392350 - AluJb SINE Alu -7 305 1 1530 260 74 27 chr6 18887204 18887493 -170392061 - L1ME1 LINE L1 -3710 2830 2556 368 251 131 76 chr6 18887557 18887752 -170391802 - L1ME1 LINE L1 -4115 2606 2423 2439 81 0 0 chr6 18887752 18888048 -170391506 + AluSx SINE Alu 1 296 -16 368 251 131 76 chr6 18888048 18888568 -170390986 - L1ME1 LINE L1 -4298 2423 1933 261 0 0 0 chr6 18888568 18888597 -170390957 + (TG)n Simple_repeat Simple_repeat 2 30 0 368 251 131 76 chr6 18888597 18889047 -170390507 - L1ME1 LINE L1 -4788 1933 1298 2069 125 0 4 chr6 18889132 18889471 -170390083 + AluSg SINE Alu 1 338 0 362 253 0 40 chr6 18891450 18891549 -170388005 + L1MC4 LINE L1 6609 6703 -1339 823 162 30 24 chr6 18891598 18891765 -170387789 + L1M4 LINE L1 16 183 -6359 840 149 316 11 chr6 18892476 18892557 -170386997 + AluSg1 SINE Alu 55 110 -199 1895 137 38 3 chr6 18892557 18892850 -170386704 + AluSg SINE Alu 1 303 -7 840 149 316 11 chr6 18892850 18892942 -170386612 + AluSg1 SINE Alu 110 281 -28 815 182 0 0 chr6 18893067 18893215 -170386339 + L1M4 LINE L1 16 163 -6379 2103 154 0 0 chr6 18893216 18893521 -170386033 + AluJb SINE Alu 1 305 -7 1158 232 28 55 chr6 18893541 18893903 -170385651 + L1M4 LINE L1 153 504 -6038 1064 182 5 15 chr6 18893906 18894109 -170385445 - MLT1A1 LTR MaLR 0 365 165 302 240 13 0 chr6 18894121 18894196 -170385358 + MIR SINE MIR 8 83 -179 500 272 43 0 chr6 18894225 18894387 -170385167 - MARNA DNA Mariner -403 183 15 4410 168 24 12 chr6 18894956 18895689 -170383865 - L1PB4 LINE L1 0 6156 5433 1850 164 3 14 chr6 18895689 18895981 -170383573 - AluJo SINE Alu -18 294 6 4410 168 24 12 chr6 18895981 18896977 -170382577 - L1PB4 LINE L1 -723 5433 4402 607 157 112 51 chr6 18897062 18897240 -170382314 + MER53 DNA DNA 1 189 0 1369 258 133 31 chr6 18897244 18897498 -170382056 - L2 LINE L2 -54 3259 3032 222 37 0 0 chr6 18897498 18897525 -170382029 + (CA)n Simple_repeat Simple_repeat 2 28 0 1369 258 133 31 chr6 18897525 18898020 -170381534 - L2 LINE L2 -281 3032 2431 2941 132 0 9 chr6 18898417 18898871 -170380683 + L1PA16 LINE L1 5717 6166 0 569 134 50 17 chr6 18899685 18899804 -170379750 - AluSg/x SINE Alu -6 303 181 24 32 0 0 chr6 18899827 18899858 -170379696 + AT_rich Low_complexity Low_complexity 1 31 0 3981 193 36 67 chr6 18899873 18900590 -170378964 + L1MC/D LINE L1 4114 4852 -1388 2118 133 0 3 chr6 18900590 18900892 -170378662 + AluSg SINE Alu 1 301 -9 3981 193 36 67 chr6 18900892 18901024 -170378530 + L1MC/D LINE L1 4852 4987 -1253 1934 174 0 3 chr6 18901024 18901322 -170378232 + AluJb SINE Alu 1 297 -15 3981 193 36 67 chr6 18901322 18901683 -170377871 + L1MC/D LINE L1 4987 5299 -941 1973 140 24 0 chr6 18901683 18901976 -170377578 + AluJb SINE Alu 1 300 -12 3981 193 36 67 chr6 18901976 18902170 -170377384 + L1MC/D LINE L1 5299 5497 -743 445 203 0 24 chr6 18902166 18902289 -170377265 - L1MEc LINE L1 -2212 4003 3884 * 10346 141 20 18 chr6 18902290 18903115 -170376439 - L1PA13 LINE L1 0 6163 5341 2060 141 7 0 chr6 18903115 18903406 -170376148 - AluSx SINE Alu -19 293 1 10346 141 20 18 chr6 18903406 18904331 -170375223 - L1PA13 LINE L1 -822 5341 4390 351 0 0 0 chr6 18904331 18904370 -170375184 + (TG)n Simple_repeat Simple_repeat 1 39 0 10346 141 20 18 chr6 18904370 18905253 -170374301 - L1PA13 LINE L1 -1773 4390 3510 1764 256 84 40 chr6 18905272 18906108 -170373446 - L1MEc LINE L1 -3266 2949 2151 201 39 0 0 chr6 18906108 18906134 -170373420 + (CCA)n Simple_repeat Simple_repeat 2 27 0 1764 256 84 40 chr6 18906134 18906263 -170373291 - L1MEc LINE L1 -4064 2151 2029 1955 98 76 0 chr6 18906263 18906527 -170373027 + AluSq SINE Alu 1 284 -29 657 132 0 0 chr6 18906436 18906529 -170373025 + AluSp/q SINE Alu 194 320 0 * 204 59 0 29 chr6 18906529 18906563 -170372991 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1764 256 84 40 chr6 18906563 18906985 -170372569 - L1MEc LINE L1 -4186 2029 1535 573 287 93 50 chr6 18907418 18908266 -170371288 + L1MEd LINE L1 561 1350 -4781 581 282 90 65 chr6 18908319 18908596 -170370958 - MLT1H LTR MaLR -243 306 23 658 124 150 0 chr6 18908968 18909081 -170370473 + FRAM SINE Alu 1 128 -48 1664 154 0 19 chr6 18909081 18909348 -170370206 + AluSx SINE Alu 47 308 -4 2173 100 35 3 chr6 18909361 18909650 -170369904 + AluSq SINE Alu 1 298 -15 1519 183 47 10 chr6 18910205 18910505 -170369049 - AluJo SINE Alu -1 311 1 313 294 68 14 chr6 18910680 18910826 -170368728 + MIR3 SINE MIR 30 183 -25 2409 107 0 0 chr6 18911158 18911467 -170368087 - AluSc SINE Alu 0 309 1 2352 92 3 0 chr6 18912802 18913097 -170366457 - AluSp SINE Alu -17 296 1 642 298 75 94 chr6 18914068 18914441 -170365113 + LTR16A LTR ERVL 1 365 -92 510 81 11 0 chr6 18914441 18914528 -170365026 - L1PB2 LINE L1 -1 6150 6063 642 298 75 94 chr6 18914528 18914620 -170364934 + LTR16A LTR ERVL 365 457 0 1699 161 52 17 chr6 18915168 18915459 -170364095 + AluJo SINE Alu 5 305 -7 801 229 209 34 chr6 18915674 18916032 -170363522 - MLT1H LTR MaLR -128 421 1 311 264 56 48 chr6 18916032 18916157 -170363397 + L2 LINE L2 2575 2700 -614 1202 174 0 10 chr6 18916225 18916250 -170363304 - AluJb SINE Alu -1 311 287 477 0 0 0 chr6 18916250 18916303 -170363251 + (TG)n Simple_repeat Simple_repeat 2 54 0 1202 174 0 10 chr6 18916303 18916484 -170363070 - AluJb SINE Alu -25 287 107 2180 79 11 4 chr6 18916484 18916764 -170362790 + AluSc SINE Alu 16 297 -12 2593 62 0 3 chr6 18916764 18917073 -170362481 + AluY SINE Alu 1 308 -3 437 269 53 124 chr6 18917077 18917539 -170362015 + L2 LINE L2 2710 3096 -217 1994 115 24 10 chr6 18917539 18917827 -170361727 - AluSx SINE Alu -20 292 1 437 269 53 124 chr6 18917827 18918031 -170361523 + L2 LINE L2 3096 3313 0 987 113 0 0 chr6 18918366 18918508 -170361046 - L1PA10 LINE L1 -1 6167 6026 2336 107 3 0 chr6 18918523 18918832 -170360722 - AluSg SINE Alu 0 310 1 2107 105 3 48 chr6 18919313 18919627 -170359927 - AluJb SINE Alu -12 300 1 3731 212 93 8 chr6 18919850 18920856 -170358698 + MER69B DNA AcHobo 10 1151 -1375 1567 186 16 19 chr6 18920856 18921167 -170358387 - AluJo SINE Alu -2 310 1 3731 212 93 8 chr6 18921167 18921251 -170358303 + MER69B DNA AcHobo 1151 1226 0 356 296 10 77 chr6 18921298 18921393 -170358161 - MIR SINE MIR -1 261 183 2163 116 3 0 chr6 18921393 18921732 -170357822 + AluSp SINE Alu 1 340 0 356 296 10 77 chr6 18921732 18921831 -170357723 - MIR SINE MIR -79 183 79 505 290 74 54 chr6 18922887 18923319 -170356235 - L3 LINE CR1 -59 1518 1024 240 281 0 0 chr6 18923393 18923457 -170356097 - L3 LINE CR1 -606 971 908 281 289 199 13 chr6 18924060 18924216 -170355338 - Charlie8 DNA MER1_type -2130 287 103 594 91 0 0 chr6 18924299 18924376 -170355178 + LTR26B LTR ERV1 2 78 -453 860 108 0 0 chr6 18924377 18924488 -170355066 + 7SLRNA srpRNA srpRNA 203 313 -7 2900 144 6 45 chr6 18924488 18924723 -170354831 + LTR26B LTR ERV1 65 273 -258 2214 112 56 34 chr6 18924723 18925079 -170354475 + THE1B LTR MaLR 1 364 0 2900 144 6 45 chr6 18925079 18925329 -170354225 + LTR26B LTR ERV1 273 531 0 225 224 41 0 chr6 18925358 18925407 -170354147 - MLT1J LTR MaLR -26 485 435 324 0 0 0 chr6 18925672 18925708 -170353846 + (TG)n Simple_repeat Simple_repeat 1 36 0 300 27 0 0 chr6 18925857 18925894 -170353660 + (CA)n Simple_repeat Simple_repeat 2 38 0 2777 91 18 61 chr6 18926015 18926156 -170353398 - LTR56 LTR ERV1 0 445 299 2333 98 0 0 chr6 18926156 18926452 -170353102 - AluSq SINE Alu -17 296 1 2777 91 18 61 chr6 18926452 18926587 -170352967 - LTR56 LTR ERV1 -146 299 160 1541 83 69 5 chr6 18926587 18926803 -170352751 - MER30 DNA MER1_type 0 230 1 2777 91 18 61 chr6 18926803 18926921 -170352633 - LTR56 LTR ERV1 -285 160 94 1925 130 82 23 chr6 18926921 18927275 -170352279 - THE1C LTR MaLR 0 375 1 2777 91 18 61 chr6 18927275 18927366 -170352188 - LTR56 LTR ERV1 -351 94 1 751 194 74 25 chr6 18927370 18927612 -170351942 - L1ME LINE L1 -342 5779 5526 354 193 243 7 chr6 18927617 18927757 -170351797 + MER5A DNA MER1_type 11 183 -6 521 300 67 10 chr6 18927779 18928285 -170351269 - L1M3 LINE L1 -711 5457 4839 4048 146 6 2 chr6 18928630 18929262 -170350292 + MER41B LTR ERV1 1 635 0 234 299 123 75 chr6 18930178 18930486 -170349068 - LTR16C LTR ERVL -1 490 168 32 0 0 0 chr6 18931467 18931499 -170348055 + AT_rich Low_complexity Low_complexity 1 32 0 262 212 145 50 chr6 18931572 18931751 -170347803 + ORSL DNA AcHobo 80 275 0 2331 108 0 0 chr6 18931986 18932351 -170347203 + AluSx SINE Alu 1 365 0 505 139 0 47 chr6 18932356 18932442 -170347112 - L1MD2 LINE L1 -21 6338 6257 1725 98 128 22 chr6 18932454 18932728 -170346826 - AluY SINE Alu -8 303 1 6103 107 9 28 chr6 18932859 18933892 -170345662 + L1PA16 LINE L1 5142 6157 -9 27 0 0 0 chr6 18933892 18933919 -170345635 + AT_rich Low_complexity Low_complexity 1 27 0 2436 71 3 3 chr6 18934094 18934389 -170345165 - AluY SINE Alu -16 295 1 1179 161 0 70 chr6 18934594 18934824 -170344730 - MER20 DNA MER1_type -5 214 1 500 268 49 5 chr6 18934961 18935121 -170344433 + MIR SINE MIR 9 168 -62 398 273 128 6 chr6 18935454 18935626 -170343928 - MIR SINE MIR -21 241 49 2346 81 0 36 chr6 18935863 18936172 -170343382 - AluY SINE Alu -13 298 1 2018 87 42 52 chr6 18937267 18937579 -170341975 + AluSx SINE Alu 1 309 0 2488 66 16 0 chr6 18937731 18938034 -170341520 - AluY SINE Alu -3 308 1 466 281 54 75 chr6 18938561 18938949 -170340605 - MLT1J2 LTR MaLR -4 446 67 22 35 0 0 chr6 18939279 18939308 -170340246 + AT_rich Low_complexity Low_complexity 1 29 0 1745 188 0 13 chr6 18939823 18940137 -170339417 + AluJb SINE Alu 1 310 -2 2140 112 0 16 chr6 18940229 18940542 -170339012 - AluY SINE Alu -3 308 1 736 223 60 0 chr6 18941008 18941174 -170338380 + MER5B DNA MER1_type 1 176 -2 216 0 0 0 chr6 18941193 18941217 -170338337 + (T)n Simple_repeat Simple_repeat 1 24 0 1001 154 0 0 chr6 18941217 18941366 -170338188 + AluSc SINE Alu 73 221 -88 303 380 38 11 chr6 18941367 18941551 -170338003 - MER5A DNA MER1_type 0 189 1 24 0 0 0 chr6 18941602 18941626 -170337928 + AT_rich Low_complexity Low_complexity 1 24 0 714 201 0 8 chr6 18941641 18941775 -170337779 - FLAM_C SINE Alu 0 133 1 1586 287 59 30 chr6 18941820 18942325 -170337229 - MLT1G1 LTR MaLR 0 595 76 1380 163 192 31 chr6 18942534 18942920 -170336634 + pTR5 LTR ERV1 742 1189 -1249 369 182 32 26 chr6 18943276 18943430 -170336124 + C-rich Low_complexity Low_complexity 2 156 0 4461 128 40 75 chr6 18943454 18944305 -170335249 + LTR12 LTR ERV1 5 825 -1 262 179 64 51 chr6 18944640 18944718 -170334836 - MIR3 SINE MIR -1 207 129 2373 77 0 3 chr6 18945323 18945623 -170333931 + AluY SINE Alu 1 299 -12 2495 69 0 7 chr6 18945812 18946117 -170333437 + AluY SINE Alu 1 303 -8 2247 97 14 0 chr6 18946127 18946417 -170333137 + AluSp SINE Alu 1 294 -19 750 107 116 8 chr6 18947584 18947705 -170331849 + AluJo SINE Alu 3 136 -176 390 197 3 9 chr6 18947997 18948077 -170331477 + AluSx SINE Alu 1 60 -248 642 142 117 8 chr6 18948078 18948198 -170331356 - LTR12 LTR ERV1 0 714 582 3300 191 174 1 chr6 18948198 18948901 -170330653 - LTR12 LTR ERV1 0 826 3 812 207 62 76 chr6 18949088 18949378 -170330176 - pTR5 LTR ERV1 -1410 1028 743 1873 79 24 12 chr6 18949378 18949630 -170329924 + AluSx SINE Alu 58 312 0 1627 157 34 62 chr6 18949874 18950198 -170329356 + MLT1B LTR MaLR 76 390 0 411 354 29 10 chr6 18950243 18950452 -170329102 + L1MEd LINE L1 452 664 -5455 * 1440 179 51 34 chr6 18950443 18950794 -170328760 + L1MB4 LINE L1 5824 6180 0 652 286 37 38 chr6 18950986 18951067 -170328487 + L1MEd LINE L1 896 976 -5303 2184 104 0 22 chr6 18951067 18951384 -170328170 + AluSx SINE Alu 1 310 -2 652 286 37 38 chr6 18951384 18951752 -170327802 + L1MEd LINE L1 976 1387 -4892 342 194 39 48 chr6 18951766 18951869 -170327685 - MLT1H1 LTR MaLR 0 555 454 2146 117 10 0 chr6 18952044 18952342 -170327212 + AluSx SINE Alu 1 301 -11 278 279 0 0 chr6 18952451 18952512 -170327042 - MLT1F LTR MaLR -459 83 23 2675 122 43 32 chr6 18952519 18952960 -170326594 - Tigger2 DNA MER2_type 0 2718 2273 2488 81 0 3 chr6 18952970 18953279 -170326275 + AluSq SINE Alu 1 308 -5 372 191 0 0 chr6 18953303 18953366 -170326188 - Tigger2 DNA MER2_type -2655 63 1 392 253 99 78 chr6 18953384 18953668 -170325886 - MLT1H-int LTR MaLR -1 1370 1078 2276 119 0 0 chr6 18953668 18953971 -170325583 + AluSx SINE Alu 1 303 -9 2313 110 0 19 chr6 18954082 18954400 -170325154 - AluSx SINE Alu 0 312 1 1824 158 14 14 chr6 18954498 18954633 -170324921 + AluJo SINE Alu 2 136 -176 2149 107 0 47 chr6 18954633 18954951 -170324603 + AluSg SINE Alu 1 303 -7 1824 158 14 14 chr6 18954951 18955112 -170324442 + AluJo SINE Alu 135 298 -14 3914 196 84 9 chr6 18955114 18955899 -170323655 - MER21B LTR ERV1 -19 844 1 2023 167 22 6 chr6 18956665 18957024 -170322530 + MLT1A1 LTR MaLR 1 365 0 231 250 0 17 chr6 18957159 18957219 -170322335 - MLT1H-int LTR MaLR -1644 91 33 357 226 11 34 chr6 18957286 18957379 -170322175 - MLT1H LTR MaLR -6 549 454 560 286 42 67 chr6 18957536 18957892 -170321662 + L1MDa LINE L1 1761 2107 -4433 257 263 0 0 chr6 18958056 18958155 -170321399 + L1MDa LINE L1 2479 2577 -3963 * 622 292 76 50 chr6 18958126 18958892 -170320662 + L1MDa LINE L1 2797 3582 -2958 3315 269 149 48 chr6 18958995 18959169 -170320385 + L2 LINE L2 1370 1525 -1788 1756 176 3 3 chr6 18959169 18959464 -170320090 + AluJb SINE Alu 1 295 -17 3315 269 149 48 chr6 18959464 18960008 -170319546 + L2 LINE L2 1525 2013 -1300 2362 104 0 0 chr6 18960008 18960315 -170319239 - AluY SINE Alu -4 307 1 3315 269 149 48 chr6 18960315 18961035 -170318519 + L2 LINE L2 2013 2659 -654 2369 67 3 3 chr6 18961035 18961332 -170318222 - AluY SINE Alu -14 297 1 3315 269 149 48 chr6 18961332 18961647 -170317907 + L2 LINE L2 2659 3311 -2 2751 282 68 39 chr6 18961647 18961795 -170317759 + L1MDa LINE L1 4109 4251 -2289 2116 77 4 0 chr6 18961795 18962056 -170317498 - AluSg SINE Alu -14 296 35 2751 282 68 39 chr6 18962056 18963546 -170316008 + L1MDa LINE L1 4251 5795 -745 3036 157 48 66 chr6 18963553 18964157 -170315397 - LTR59 LTR ERV1 -4 593 1 4908 111 45 49 chr6 18964203 18964787 -170314767 + MER4E LTR ERV1 1 583 -196 2307 113 0 6 chr6 18964787 18965098 -170314456 - AluSq SINE Alu -4 309 1 4908 111 45 49 chr6 18965098 18965295 -170314259 + MER4E LTR ERV1 583 779 0 1901 162 0 16 chr6 18965321 18965635 -170313919 - AluJb SINE Alu -3 309 1 2651 162 49 126 chr6 18966229 18966981 -170312573 - LTR8A LTR ERV1 0 727 34 2957 190 36 122 chr6 18967019 18967467 -170312087 + L1MC5 LINE L1 6476 6961 -1000 2547 75 0 0 chr6 18967467 18967775 -170311779 + AluSx SINE Alu 1 308 -4 2957 190 36 122 chr6 18967775 18968014 -170311540 + L1MC5 LINE L1 6961 7219 -742 1710 187 76 15 chr6 18968014 18968356 -170311198 + MLT1A1 LTR MaLR 3 365 0 2957 190 36 122 chr6 18968356 18968653 -170310901 + L1MC5 LINE L1 7219 7330 -631 2371 100 0 0 chr6 18968653 18968962 -170310592 + AluSq SINE Alu 1 309 -4 2957 190 36 122 chr6 18968962 18969347 -170310207 + L1MC5 LINE L1 7330 7747 -214 2531 167 59 133 chr6 18969433 18970218 -170309336 + LTR8A LTR ERV1 1 727 0 1621 217 21 32 chr6 18970393 18970771 -170308783 - MLT1A2 LTR MaLR 0 374 1 236 212 152 0 chr6 18971967 18972033 -170307521 + MLT1L LTR MaLR 318 393 -222 317 276 51 39 chr6 18972059 18972215 -170307339 + MLT1L LTR MaLR 458 615 0 685 240 136 50 chr6 18972245 18972503 -170307051 - MLT1J LTR MaLR -9 502 223 1870 145 21 0 chr6 18972946 18973228 -170306326 + AluSx SINE Alu 1 288 -24 363 277 0 0 chr6 18974140 18974223 -170305331 + MIR SINE MIR 179 261 -1 1085 176 0 6 chr6 18974224 18974406 -170305148 - AluSg/x SINE Alu -7 303 123 317 300 120 27 chr6 18974408 18974558 -170304996 + MIR3 SINE MIR 36 199 -9 1323 139 0 0 chr6 18974903 18975090 -170304464 - AluSc SINE Alu -116 193 7 2349 97 6 0 chr6 18975095 18975406 -170304148 - AluSp SINE Alu 0 313 1 2319 107 0 0 chr6 18975437 18975747 -170303807 + AluSg SINE Alu 1 310 0 1224 234 81 31 chr6 18975747 18976132 -170303422 - MLT1C LTR MaLR -58 409 6 223 250 0 33 chr6 18976353 18976413 -170303141 + C-rich Low_complexity Low_complexity 1 58 0 1902 159 36 3 chr6 18977542 18977844 -170301710 - AluSx SINE Alu 0 312 1 970 165 23 65 chr6 18978179 18978457 -170301097 + MSTB LTR MaLR 1 353 -73 2332 110 3 0 chr6 18978457 18978767 -170300787 - AluSx SINE Alu -1 311 1 970 165 23 65 chr6 18978767 18978839 -170300715 + MSTB LTR MaLR 353 426 0 349 303 103 23 chr6 18979122 18979297 -170300257 + MIR SINE MIR 34 222 -40 1829 142 7 29 chr6 18980695 18981004 -170298550 - AluJo SINE Alu -10 302 1 378 0 0 0 chr6 18981440 18981482 -170298072 + (TA)n Simple_repeat Simple_repeat 2 43 0 269 255 0 10 chr6 18981781 18981883 -170297671 + (TA)n Simple_repeat Simple_repeat 1 101 0 181 264 69 35 chr6 18981934 18982021 -170297533 + L2 LINE L2 3137 3226 -46 771 219 88 0 chr6 18982046 18982206 -170297348 - MER5B DNA MER1_type -2 176 3 491 323 25 10 chr6 18982665 18982863 -170296691 + L1ME LINE L1 5575 5775 -346 345 100 0 0 chr6 18982865 18982915 -170296639 + (TA)n Simple_repeat Simple_repeat 1 50 0 1507 137 0 13 chr6 18982921 18983148 -170296406 - AluJb SINE Alu -26 286 63 2079 103 0 7 chr6 19083256 19083548 -170196006 + AluSx SINE Alu 1 290 -22 1271 144 101 25 chr6 19084165 19084309 -170195245 + AluSx SINE Alu 3 135 -177 2449 60 0 0 chr6 19084309 19084609 -170194945 + AluY SINE Alu 1 300 -11 1271 144 101 25 chr6 19084609 19084741 -170194813 + AluSx SINE Alu 135 300 -12 25 0 0 0 chr6 19085036 19085061 -170194493 + AT_rich Low_complexity Low_complexity 1 25 0 1867 118 49 3 chr6 19085067 19085355 -170194199 + AluSg SINE Alu 1 301 -9 1927 129 7 0 chr6 19085407 19085701 -170193853 + AluSx SINE Alu 1 296 -16 320 98 78 0 chr6 19085987 19086038 -170193516 + LTR8 LTR ERV1 533 587 -104 279 219 324 76 chr6 19086098 19086308 -170193246 - MIR SINE MIR 0 262 1 560 180 197 39 chr6 19086570 19086748 -170192806 + MER58C DNA MER1_type 10 215 0 2081 92 3 20 chr6 19086798 19087092 -170192462 + AluSp SINE Alu 9 297 -16 1872 121 3 14 chr6 19087101 19087234 -170192320 + AluSg SINE Alu 2 135 -175 2212 109 0 0 chr6 19087234 19087537 -170192017 + AluSg1 SINE Alu 1 303 -6 1872 121 3 14 chr6 19087537 19087685 -170191869 + AluSg SINE Alu 135 280 -30 2354 63 0 3 chr6 19088078 19088379 -170191175 + AluY SINE Alu 1 300 -11 1148 127 0 0 chr6 19088381 19088554 -170191000 + AluSp SINE Alu 136 308 -5 2236 84 10 3 chr6 19088770 19089079 -170190475 + AluSx SINE Alu 1 311 -1 21 36 0 0 chr6 19089494 19089522 -170190032 + AT_rich Low_complexity Low_complexity 1 28 0 2474 47 0 0 chr6 19089863 19090160 -170189394 + AluY SINE Alu 1 297 -14 2165 61 14 10 chr6 19090612 19090909 -170188645 - AluYa5 SINE Alu -13 298 1 23 0 0 0 chr6 19092317 19092340 -170187214 + GC_rich Low_complexity Low_complexity 1 23 0 271 350 6 6 chr6 19092605 19092768 -170186786 + (CCG)n Simple_repeat Simple_repeat 3 165 0 493 319 48 0 chr6 19093243 19093409 -170186145 + MIR SINE MIR 40 213 -49 327 331 37 7 chr6 19093601 19093737 -170185817 - MIR3 SINE MIR -28 180 41 2115 117 0 13 chr6 19093816 19094132 -170185422 - AluSx SINE Alu 0 312 1 421 220 77 82 chr6 19094145 19094191 -170185363 + MIR SINE MIR 66 111 -151 2116 73 37 13 chr6 19094191 19094491 -170185063 - AluSp SINE Alu -6 307 1 421 220 77 82 chr6 19094491 19094626 -170184928 + MIR SINE MIR 111 246 -16 1988 109 3 23 chr6 19095728 19096031 -170183523 + AluSx SINE Alu 1 297 -15 237 65 0 0 chr6 19096043 19096074 -170183480 + (TA)n Simple_repeat Simple_repeat 2 32 0 1563 179 66 0 chr6 19096349 19096650 -170182904 + Tigger3(Golem) DNA MER2_type 1 321 -2708 1851 147 0 3 chr6 19096707 19097000 -170182554 + AluJo SINE Alu 12 303 -9 221 0 35 0 chr6 19097013 19097042 -170182512 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1973 127 3 7 chr6 19097648 19097948 -170181606 + AluSx SINE Alu 1 299 -13 2364 66 0 22 chr6 19098003 19098320 -170181234 + AluY SINE Alu 1 310 -1 252 195 237 51 chr6 19098629 19098747 -170180807 + MER5A DNA MER1_type 18 157 -32 201 235 73 15 chr6 19098715 19098783 -170180771 - MER5A DNA MER1_type -114 75 4 * 2282 51 0 51 chr6 19099614 19099930 -170179624 - AluY SINE Alu -11 300 1 207 0 0 0 chr6 19100700 19100723 -170178831 + (A)n Simple_repeat Simple_repeat 1 23 0 1538 101 5 5 chr6 19101569 19101786 -170177768 + AluSp SINE Alu 65 281 -32 198 0 0 0 chr6 19101980 19102002 -170177552 + (TTTC)n Simple_repeat Simple_repeat 3 24 0 1150 124 0 6 chr6 19102019 19102196 -170177358 - AluSg/x SINE Alu -21 289 114 2237 72 3 7 chr6 19103017 19103310 -170176244 - AluY SINE Alu -15 296 5 1821 156 3 0 chr6 19103530 19103825 -170175729 - AluSx SINE Alu -16 296 1 1839 141 14 3 chr6 19103827 19104118 -170175436 - AluJo SINE Alu -18 294 1 435 19 0 0 chr6 19104347 19104399 -170175155 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 234 206 101 63 chr6 19104484 19104567 -170174987 - MIR SINE MIR -110 98 34 330 197 103 60 chr6 19104834 19104951 -170174603 + MER53 DNA DNA 3 124 -65 243 0 0 0 chr6 19104995 19105022 -170174532 + (TA)n Simple_repeat Simple_repeat 1 27 0 1162 120 6 0 chr6 19105022 19105197 -170174357 - AluSg/x SINE Alu -3 309 134 2222 85 7 0 chr6 19105197 19105491 -170174063 - AluY SINE Alu -15 296 1 1047 158 84 0 chr6 19105743 19105945 -170173609 - AluJb SINE Alu -9 303 85 1812 109 64 0 chr6 19105989 19106277 -170173277 - AluY SINE Alu 0 305 1 804 132 0 0 chr6 19106632 19106746 -170172808 - 5S rRNA rRNA -1 120 7 2195 97 13 0 chr6 19107211 19107510 -170172044 - AluSx SINE Alu -9 303 1 292 223 89 121 chr6 19107581 19107619 -170171935 + MER5A DNA MER1_type 17 55 -134 207 0 0 0 chr6 19107619 19107642 -170171912 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 1682 171 0 17 chr6 19107643 19107930 -170171624 - AluJb SINE Alu -30 282 1 292 223 89 121 chr6 19107930 19108046 -170171508 + MER5A DNA MER1_type 54 168 -21 1969 77 25 32 chr6 19108288 19108594 -170170960 - AluSp SINE Alu 0 304 1 970 198 6 0 chr6 19108717 19108884 -170170670 + FAM SINE Alu 1 168 -7 279 0 0 0 chr6 19108890 19108921 -170170633 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 706 188 8 16 chr6 19109490 19109618 -170169936 + FLAM_C SINE Alu 2 128 -5 185 319 11 43 chr6 19109952 19110046 -170169508 - L3 LINE CR1 -5 1572 1482 27 0 0 0 chr6 19110387 19110414 -170169140 + AT_rich Low_complexity Low_complexity 1 27 0 2044 101 7 13 chr6 19110501 19110799 -170168755 + AluSx SINE Alu 9 304 -8 2588 30 0 0 chr6 19110799 19111098 -170168456 + AluY SINE Alu 1 299 -12 253 302 85 9 chr6 19111098 19111204 -170168350 - MIR SINE MIR -79 129 16 1998 107 18 0 chr6 19111281 19111562 -170167992 + AluSg SINE Alu 1 286 -24 304 254 0 192 chr6 19111644 19111837 -170167717 - MIR SINE MIR -6 256 101 808 148 15 22 chr6 19111838 19111973 -170167581 + AluJo SINE Alu 2 135 -177 2144 67 0 37 chr6 19112047 19112346 -170167208 - AluY SINE Alu -21 290 3 343 301 62 17 chr6 19112679 19112855 -170166699 - L3 LINE CR1 -171 1406 1223 302 321 95 22 chr6 19112887 19113024 -170166530 + HAL1 LINE L1 1 147 -2360 2202 61 4 0 chr6 19113024 19113333 -170166221 - AluY SINE Alu 0 310 1 723 105 0 0 chr6 19113333 19113438 -170166116 - AluSg/x SINE Alu -2 308 204 3975 163 62 61 chr6 19113438 19114496 -170165058 + pTR5 LTR ERV1 57 370 -344 1024 299 66 21 chr6 19114680 19115104 -170164450 - LTR16B LTR ERVL -4 460 18 1974 132 3 10 chr6 19115358 19115669 -170163885 + AluSx SINE Alu 1 309 -3 24 0 0 0 chr6 19115893 19115917 -170163637 + AT_rich Low_complexity Low_complexity 1 24 0 342 241 121 0 chr6 19116043 19116184 -170163370 + L1P LINE L1 4883 5040 -1106 1268 169 29 16 chr6 19116240 19116483 -170163071 + AluJb SINE Alu 35 280 -32 596 246 22 78 chr6 19116484 19116584 -170162970 + L1MC4a LINE L1 5696 5800 -2008 1586 166 24 10 chr6 19116584 19116874 -170162680 + AluJb SINE Alu 1 294 -18 596 246 22 78 chr6 19116874 19116945 -170162609 + L1MC4a LINE L1 5800 5853 -1955 1713 173 0 10 chr6 19116945 19117245 -170162309 + AluJo SINE Alu 9 305 -7 596 246 22 78 chr6 19117245 19117304 -170162250 + L1MC4a LINE L1 5853 5914 -1894 341 202 96 0 chr6 19117634 19117728 -170161826 - MER115 DNA AcHobo -65 628 526 2162 119 0 0 chr6 19117731 19118042 -170161512 - AluSx SINE Alu -1 311 1 844 227 6 0 chr6 19118045 19118208 -170161346 - FRAM SINE Alu -17 159 1 2039 125 3 0 chr6 19118224 19118527 -170161027 + AluSx SINE Alu 1 304 -8 505 152 0 0 chr6 19118576 19118655 -170160899 - AluJ/FLAM SINE Alu -213 99 21 1895 134 7 0 chr6 19118655 19118946 -170160608 - AluSx SINE Alu -11 301 9 5468 168 66 33 chr6 19119000 19120452 -170159102 + pTR5 LTR ERV1 735 2396 -42 2665 41 0 0 chr6 19120452 19120770 -170158784 - AluYb8 SINE Alu 0 318 1 5468 168 66 33 chr6 19120770 19120808 -170158746 + pTR5 LTR ERV1 2396 2431 -7 298 240 40 40 chr6 19120811 19120886 -170158668 + FRAM/FAM SINE Alu 4 78 -97 271 344 73 0 chr6 19120892 19120988 -170158566 + FRAM SINE Alu 56 158 -8 237 125 143 18 chr6 19121075 19121131 -170158423 + MLT2F LTR ERVL 1 63 -600 1515 164 42 0 chr6 19121178 19121464 -170158090 - AluSx SINE Alu -12 300 3 1475 227 112 10 chr6 19121472 19121855 -170157699 + MLT2F LTR ERVL 184 605 -58 1531 167 4 8 chr6 19122948 19123212 -170156342 - AluJo SINE Alu -49 263 1 2246 89 3 0 chr6 19123234 19123536 -170156018 - AluY SINE Alu -8 303 1 26 88 0 0 chr6 19123536 19123604 -170155950 + AT_rich Low_complexity Low_complexity 1 68 0 2228 102 0 3 chr6 19123605 19123909 -170155645 + AluSx SINE Alu 1 303 -9 933 114 0 0 chr6 19124022 19124153 -170155401 + AluSg/x SINE Alu 154 284 -28 1891 89 4 0 chr6 19124175 19124432 -170155122 - AluSx SINE Alu -8 304 47 837 155 0 0 chr6 19124475 19124604 -170154950 + FLAM_C SINE Alu 1 129 -14 23 0 0 0 chr6 19124604 19124627 -170154927 + AT_rich Low_complexity Low_complexity 1 23 0 423 0 0 0 chr6 19124686 19124733 -170154821 + (CA)n Simple_repeat Simple_repeat 2 48 0 963 34 0 0 chr6 19124741 19124858 -170154696 - AluY SINE Alu -11 300 184 1865 141 10 3 chr6 19125592 19125890 -170153664 + AluSx SINE Alu 3 302 -10 938 210 20 0 chr6 19126084 19126279 -170153275 + MER105 DNA DNA 4 202 -2 813 165 0 0 chr6 19126527 19126660 -170152894 - FLAM_C SINE Alu 0 133 1 1837 123 57 17 chr6 19126735 19126905 -170152649 - AluSx SINE Alu 0 312 123 2244 107 0 0 chr6 19126905 19127215 -170152339 - AluSq SINE Alu -3 310 1 1837 123 57 17 chr6 19127215 19127344 -170152210 - AluSx SINE Alu -189 123 1 813 142 0 0 chr6 19127346 19127473 -170152081 - AluSq/x SINE Alu -186 127 1 282 335 96 5 chr6 19127625 19127834 -170151720 + MARNA DNA Mariner 88 315 -271 1981 106 23 26 chr6 19127848 19128150 -170151404 + AluSx SINE Alu 1 301 -11 277 314 174 16 chr6 19128181 19128302 -170151252 + MIR3 SINE MIR 67 206 -2 296 246 0 0 chr6 19128302 19128363 -170151191 + MARNA DNA Mariner 349 409 -177 199 304 69 39 chr6 19128443 19128545 -170151009 - L2 LINE L2 0 3313 3209 4517 129 75 92 chr6 19128626 19129019 -170150535 - L1MA9 LINE L1 0 6312 5914 1726 164 6 16 chr6 19129019 19129331 -170150223 - AluJb SINE Alu -2 310 2 4517 129 75 92 chr6 19129331 19129480 -170150074 - L1MA9 LINE L1 -398 5914 5764 333 0 0 0 chr6 19129480 19129517 -170150037 + (TG)n Simple_repeat Simple_repeat 2 38 0 4517 129 75 92 chr6 19129517 19129617 -170149937 - L1MA9 LINE L1 -548 5764 5664 1826 132 0 21 chr6 19129617 19129954 -170149600 - AluSx SINE Alu 0 331 1 4517 129 75 92 chr6 19129954 19130314 -170149240 - L1MA9 LINE L1 -648 5664 5324 892 149 23 40 chr6 19130319 19130493 -170149061 - AluJo SINE Alu -21 291 121 199 259 103 0 chr6 19130600 19130658 -170148896 - MIR SINE MIR 0 262 199 2376 166 123 17 chr6 19130666 19131131 -170148423 + MLT2B1 LTR ERVL 2 515 -5 305 241 0 46 chr6 19131186 19131273 -170148281 - MIR SINE MIR -108 154 72 408 194 140 11 chr6 19131297 19131390 -170148164 + FLAM_C SINE Alu 3 107 -36 2727 16 0 0 chr6 19131395 19131704 -170147850 - AluYa5 SINE Alu -2 309 1 25 51 0 0 chr6 19131720 19131759 -170147795 + AT_rich Low_complexity Low_complexity 1 39 0 2059 114 3 3 chr6 19132919 19133217 -170146337 - AluSx SINE Alu -14 298 1 370 307 120 29 chr6 19133682 19133956 -170145598 + L2 LINE L2 2974 3272 0 2098 107 0 0 chr6 19134790 19135079 -170144475 + AluSx SINE Alu 21 309 -3 585 254 76 87 chr6 19135118 19135308 -170144246 - MIR SINE MIR 0 262 74 1643 168 28 3 chr6 19135308 19135594 -170143960 + AluJb SINE Alu 1 293 -19 585 254 76 87 chr6 19135594 19135667 -170143887 - MIR SINE MIR -188 74 2 2151 123 0 0 chr6 19135691 19135992 -170143562 - AluSx SINE Alu -11 301 1 594 280 110 30 chr6 19136283 19136483 -170143071 + MIR SINE MIR 47 262 0 995 298 32 49 chr6 19136527 19136635 -170142919 + MLT1I LTR MaLR 44 152 -257 2025 121 10 3 chr6 19136635 19136942 -170142612 - AluSg SINE Alu -1 309 1 995 298 32 49 chr6 19136942 19137202 -170142352 + MLT1I LTR MaLR 152 406 -3 283 133 44 0 chr6 19137794 19137839 -170141715 - AluSc SINE Alu -110 189 143 293 164 98 0 chr6 19137839 19137900 -170141654 + MLT1G1 LTR MaLR 529 595 0 330 312 40 83 chr6 19137910 19137993 -170141561 + L3 LINE CR1 1214 1299 -278 2235 103 0 6 chr6 19137993 19138304 -170141250 + AluSx SINE Alu 1 309 -3 330 312 40 83 chr6 19138304 19138521 -170141033 + L3 LINE CR1 1299 1501 -76 1778 158 0 11 chr6 19138617 19138929 -170140625 - AluSx SINE Alu 0 311 3 239 111 0 22 chr6 19139546 19139591 -170139963 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 1874 128 14 10 chr6 19139594 19139890 -170139664 - AluJo SINE Alu -15 297 1 1963 176 71 47 chr6 19139892 19140187 -170139367 - MLT1C LTR MaLR 0 467 156 2191 109 3 0 chr6 19140187 19140489 -170139065 + AluSx SINE Alu 1 303 -9 1963 176 71 47 chr6 19140489 19140643 -170138911 - MLT1C LTR MaLR -311 156 7 2284 82 3 0 chr6 19140767 19141073 -170138481 - AluSp SINE Alu -6 307 1 331 226 15 90 chr6 19141238 19141371 -170138183 + L2 LINE L2 3191 3313 0 1051 167 56 60 chr6 19141483 19141619 -170137935 + MER8 DNA MER2_type 4 140 -99 1894 146 0 16 chr6 19141619 19141928 -170137626 - AluJb SINE Alu -3 309 6 1051 167 56 60 chr6 19141928 19142025 -170137529 + MER8 DNA MER2_type 140 236 -3 190 282 127 0 chr6 19142260 19142331 -170137223 + L2 LINE L2 3225 3304 -9 26 0 0 0 chr6 19142735 19142761 -170136793 + GC_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr6 19142940 19142981 -170136573 + GC_rich Low_complexity Low_complexity 1 41 0 225 0 0 0 chr6 19143048 19143073 -170136481 + (CCG)n Simple_repeat Simple_repeat 3 27 0 36 62 0 0 chr6 19143073 19143137 -170136417 + GC_rich Low_complexity Low_complexity 1 64 0 216 155 35 17 chr6 19143174 19143232 -170136322 + (CGG)n Simple_repeat Simple_repeat 1 59 0 221 146 0 55 chr6 19143412 19143467 -170136087 + (CGGGGG)n Simple_repeat Simple_repeat 6 57 0 282 283 11 0 chr6 19143970 19144062 -170135492 - MIR3 SINE MIR -23 185 93 296 276 87 24 chr6 19146608 19146735 -170132819 + L2 LINE L2 3121 3255 -17 1735 174 17 0 chr6 19146969 19147262 -170132292 + AluSx SINE Alu 1 298 -14 2384 62 0 13 chr6 19147563 19147868 -170131686 - AluSg SINE Alu -9 301 1 226 175 25 0 chr6 19148312 19148352 -170131202 + MER46A DNA MER2_type 9 49 -187 2122 113 0 7 chr6 19148359 19148659 -170130895 + AluSq SINE Alu 1 298 -15 618 162 0 19 chr6 19148659 19148764 -170130790 + MER46A DNA MER2_type 134 236 0 2114 94 7 3 chr6 19149044 19149343 -170130211 + AluSc SINE Alu 10 309 0 439 303 70 4 chr6 19149392 19149620 -170129934 + MER112 DNA MER1_type 18 260 0 3424 222 143 39 chr6 19149736 19151145 -170128409 - HAL1 LINE L1 -96 2411 856 242 336 43 43 chr6 19151147 19151263 -170128291 + L2 LINE L2 3138 3253 -19 1809 147 0 27 chr6 19151455 19151754 -170127800 - AluSx SINE Alu -21 291 1 1118 33 0 33 chr6 19152907 19153058 -170126496 + L1PA5 LINE L1 6008 6153 -1 464 174 245 0 chr6 19153518 19153616 -170125938 - MER5A DNA MER1_type -2 187 66 2374 71 7 3 chr6 19153625 19153935 -170125619 - AluY SINE Alu 0 311 1 426 134 0 12 chr6 19153935 19154007 -170125547 - AluS SINE Alu -9 302 230 5690 142 37 63 chr6 19154007 19155450 -170124104 + pTR5 LTR ERV1 276 2295 -143 1356 152 4 41 chr6 19155451 19155695 -170123859 - AluSq SINE Alu -78 235 1 435 123 14 14 chr6 19155695 19155768 -170123786 - MER5A DNA MER1_type -113 76 4 818 186 120 0 chr6 19155776 19155943 -170123611 + MER3 DNA MER1_type 1 187 -22 689 190 21 35 chr6 19155968 19156110 -170123444 - MER5B DNA MER1_type -3 175 36 701 230 78 11 chr6 19156110 19156317 -170123237 - MLT1G LTR MaLR 0 590 303 220 129 0 0 chr6 19156320 19156351 -170123203 - MER5B DNA MER1_type -143 35 5 2277 81 7 0 chr6 19156380 19156677 -170122877 + AluSg SINE Alu 2 300 -10 382 307 46 20 chr6 19156971 19157124 -170122430 + MIR3 SINE MIR 15 171 -37 189 0 0 0 chr6 19157902 19157923 -170121631 + (T)n Simple_repeat Simple_repeat 1 21 0 1858 160 0 10 chr6 19159032 19159339 -170120215 + AluJb SINE Alu 1 304 -8 27 0 0 0 chr6 19159346 19159373 -170120181 + AT_rich Low_complexity Low_complexity 1 27 0 952 117 0 7 chr6 19160300 19160437 -170119117 - AluSq/x SINE Alu -176 136 1 2451 50 0 0 chr6 19160535 19160834 -170118720 + AluY SINE Alu 1 299 -12 22 56 0 0 chr6 19160869 19160905 -170118649 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 19161338 19161359 -170118195 + AT_rich Low_complexity Low_complexity 1 21 0 243 262 33 115 chr6 19161546 19161668 -170117886 + L2 LINE L2 3174 3285 -28 23 0 0 0 chr6 19162806 19162829 -170116725 + AT_rich Low_complexity Low_complexity 1 23 0 436 213 94 39 chr6 19163777 19163904 -170115650 + MIR SINE MIR 18 151 -111 180 0 0 0 chr6 19164293 19164313 -170115241 + (A)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr6 19164451 19164474 -170115080 + AT_rich Low_complexity Low_complexity 1 23 0 2026 120 0 58 chr6 19164555 19164863 -170114691 - AluSx SINE Alu -22 290 1 2012 113 10 26 chr6 19165628 19165938 -170113616 + AluSx SINE Alu 1 305 -7 842 216 0 7 chr6 19166639 19166787 -170112767 - FRAM SINE Alu -30 146 1 452 250 0 9 chr6 19166787 19166899 -170112655 - L1ME2 LINE L1 -12 6152 6042 2099 110 7 3 chr6 19166902 19167192 -170112362 + AluSg SINE Alu 1 291 -19 2330 102 0 0 chr6 19167316 19167621 -170111933 - AluSq SINE Alu -8 305 1 2008 125 56 0 chr6 19168425 19168712 -170110842 - AluSx SINE Alu -9 303 1 2355 87 6 0 chr6 19170704 19171015 -170108539 - AluSp SINE Alu 0 313 1 1174 131 17 63 chr6 19171649 19171886 -170107668 + AluJo SINE Alu 86 311 -1 4481 153 59 106 chr6 19172936 19173575 -170105979 - MER21A LTR ERV1 0 931 352 2150 116 3 3 chr6 19173575 19173867 -170105687 + AluSx SINE Alu 1 292 -20 4481 153 59 106 chr6 19173867 19174204 -170105350 - MER21A LTR ERV1 -579 352 1 866 240 64 0 chr6 19174466 19174670 -170104884 + MIR SINE MIR 13 229 -33 243 336 82 0 chr6 19175470 19175580 -170103974 + MIR3 SINE MIR 49 167 -41 748 145 0 87 chr6 19175627 19175765 -170103789 + FLAM_C SINE Alu 1 126 -7 1635 174 16 35 chr6 19175778 19176094 -170103460 + AluJo SINE Alu 1 310 -2 21 0 0 0 chr6 19176230 19176251 -170103303 + AT_rich Low_complexity Low_complexity 1 21 0 2330 82 0 16 chr6 19176433 19176739 -170102815 - AluY SINE Alu -10 301 1 601 259 75 26 chr6 19177469 19177722 -170101832 - L1MC4a LINE L1 -167 5954 5691 253 218 18 0 chr6 19177753 19177808 -170101746 + CT-rich Low_complexity Low_complexity 1 56 0 2408 70 7 0 chr6 19177810 19178108 -170101446 - AluY SINE Alu -11 300 1 1641 167 10 27 chr6 19178108 19178406 -170101148 - AluJo SINE Alu -18 294 1 2409 82 0 3 chr6 19178431 19178734 -170100820 - AluY SINE Alu -8 303 2 1984 171 63 22 chr6 19178890 19179305 -170100249 + L1MB8 LINE L1 5741 6172 -6 1585 139 99 15 chr6 19179326 19179599 -170099955 + AluJb SINE Alu 1 296 -16 2109 117 10 16 chr6 19181891 19182199 -170097355 + AluSx SINE Alu 1 306 -6 346 230 14 81 chr6 19182773 19182901 -170096653 - L1MC4 LINE L1 -85 7957 7839 2191 97 3 39 chr6 19182901 19183210 -170096344 - AluSq SINE Alu -15 298 1 346 230 14 81 chr6 19183210 19183229 -170096325 - L1MC4 LINE L1 -203 7839 7820 1031 255 157 39 chr6 19183638 19183719 -170095835 - L1ME2 LINE L1 -212 5952 5882 482 190 0 50 chr6 19183719 19183840 -170095714 - L1MB8 LINE L1 -1 6177 6063 1031 255 157 39 chr6 19183840 19184430 -170095124 - L1ME2 LINE L1 -282 5882 5175 787 144 0 9 chr6 19184508 19184619 -170094935 + FLAM_C SINE Alu 9 118 -25 392 323 106 12 chr6 19184637 19184968 -170094586 - L1ME2 LINE L1 -1034 5112 4751 406 270 110 42 chr6 19185029 19185266 -170094288 - L1ME2 LINE L1 -1529 4617 4365 * 1210 222 115 8 chr6 19185249 19185605 -170093949 - L1ME3A LINE L1 -1 6169 5776 832 189 8 15 chr6 19185633 19185765 -170093789 - FLAM_C SINE Alu -11 132 2 355 307 104 0 chr6 19185810 19185973 -170093581 - L1ME2 LINE L1 -1811 4335 4156 25 31 0 0 chr6 19186023 19186055 -170093499 + AT_rich Low_complexity Low_complexity 1 32 0 566 220 0 9 chr6 19187099 19187208 -170092346 + MER5A DNA MER1_type 2 109 -80 1156 60 0 0 chr6 19187209 19187342 -170092212 + AluSq/x SINE Alu 1 133 -179 196 295 13 51 chr6 19187352 19187430 -170092124 - MER5A DNA MER1_type -114 75 1 2298 109 0 3 chr6 19187748 19188061 -170091493 - AluSx SINE Alu 0 312 1 387 226 286 8 chr6 19188224 19188357 -170091197 - MIR SINE MIR -61 201 32 216 0 0 0 chr6 19188397 19188421 -170091133 + (TA)n Simple_repeat Simple_repeat 2 25 0 1802 168 10 7 chr6 19188444 19188736 -170090818 - AluJb SINE Alu -18 294 2 2174 144 15 50 chr6 19188972 19189376 -170090178 - MLT1B LTR MaLR 0 390 1 2487 84 6 0 chr6 19189632 19189943 -170089611 + AluSp SINE Alu 1 313 0 412 241 0 0 chr6 19190376 19190463 -170089091 + MER5A DNA MER1_type 26 112 -77 224 119 0 24 chr6 19190550 19190592 -170088962 + (GGA)n Simple_repeat Simple_repeat 2 42 0 * 270 81 0 0 chr6 19190585 19190622 -170088932 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 2162 121 6 47 chr6 19190625 19190690 -170088864 - MER41B LTR ERV1 -286 349 283 2284 54 40 14 chr6 19190690 19190986 -170088568 - AluY SINE Alu -7 304 1 2162 121 6 47 chr6 19190986 19191284 -170088270 - MER41B LTR ERV1 -352 283 1 22 0 0 0 chr6 19191917 19191939 -170087615 + AT_rich Low_complexity Low_complexity 1 22 0 1033 109 0 124 chr6 19192562 19192709 -170086845 + AluJo SINE Alu 1 120 -192 2229 120 7 0 chr6 19192709 19193017 -170086537 + AluSx SINE Alu 1 310 -2 1033 109 0 124 chr6 19193017 19193062 -170086492 + AluJo SINE Alu 120 169 -143 1614 173 7 7 chr6 19193580 19193857 -170085697 - AluJb SINE Alu -31 281 5 391 238 79 0 chr6 19194075 19194176 -170085378 + MIR SINE MIR 127 235 -27 198 150 0 0 chr6 19194266 19194306 -170085248 + (GA)n Simple_repeat Simple_repeat 1 40 0 1697 137 79 14 chr6 19194329 19194607 -170084947 + AluSg SINE Alu 1 296 -14 272 181 64 106 chr6 19195191 19195285 -170084269 - MER5B DNA MER1_type 0 178 89 1833 148 7 7 chr6 19195955 19196252 -170083302 - AluJb SINE Alu -15 297 1 1393 124 42 28 chr6 19197224 19197441 -170082113 + AluJo SINE Alu 12 231 -81 227 244 39 26 chr6 19197609 19197687 -170081867 - MIR3 SINE MIR -49 159 81 1227 176 5 0 chr6 19198614 19198802 -170080752 - MER5A DNA MER1_type 0 189 1 342 200 43 70 chr6 19198815 19198930 -170080624 + L1ME4a LINE L1 5961 6072 -49 775 199 0 29 chr6 19199073 19199209 -170080345 + FLAM_A SINE Alu 2 133 0 1413 182 10 55 chr6 19200915 19201057 -170078497 + AluJo SINE Alu 1 125 -187 2559 48 0 0 chr6 19201057 19201352 -170078202 + AluY SINE Alu 1 295 -16 1413 182 10 55 chr6 19201352 19201500 -170078054 + AluJo SINE Alu 125 278 -34 219 36 0 0 chr6 19201669 19201697 -170077857 + (T)n Simple_repeat Simple_repeat 1 28 0 297 312 8 56 chr6 19202671 19202796 -170076758 + Tigger8 DNA MER2_type 1 119 -547 3148 120 30 84 chr6 19203062 19203604 -170075950 - L1MB3 LINE L1 -3 6180 5671 1947 152 3 7 chr6 19203604 19203901 -170075653 - AluSx SINE Alu -16 296 1 3148 120 30 84 chr6 19203901 19203950 -170075604 - L1MB3 LINE L1 -512 5671 5621 2162 118 3 3 chr6 19204225 19204522 -170075032 + AluSx SINE Alu 1 297 -15 943 270 27 0 chr6 19205315 19205574 -170073980 + L2 LINE L2 2309 2574 -740 314 200 29 14 chr6 19205571 19205641 -170073913 + L2 LINE L2 2911 2981 -332 * 30 27 0 0 chr6 19206638 19206675 -170072879 + AT_rich Low_complexity Low_complexity 1 37 0 189 305 34 0 chr6 19206741 19206800 -170072754 - L2 LINE L2 -15 3298 3238 23 0 0 0 chr6 19207385 19207408 -170072146 + AT_rich Low_complexity Low_complexity 1 23 0 1860 154 0 16 chr6 19207427 19207767 -170071787 - AluJb SINE Alu 0 312 1 953 110 0 0 chr6 19207833 19207951 -170071603 + FLAM_C SINE Alu 1 118 -15 532 251 21 16 chr6 19208188 19208379 -170071175 - L1ME3A LINE L1 -219 5951 5760 383 282 8 8 chr6 19209478 19209609 -170069945 + MER103 DNA DNA 35 165 -1 2268 103 0 0 chr6 19209865 19210165 -170069389 - AluSx SINE Alu -12 300 1 201 108 0 0 chr6 19211493 19211530 -170068024 + (ATGTG)n Simple_repeat Simple_repeat 3 39 0 521 279 99 68 chr6 19211709 19212092 -170067462 - L2 LINE L2 -1 3312 2918 217 304 71 0 chr6 19212463 19212519 -170067035 - L2 LINE L2 0 3272 3213 181 326 81 58 chr6 19212866 19213038 -170066516 - L2 LINE L2 -457 2857 2682 217 238 129 61 chr6 19213107 19213216 -170066338 + MIR SINE MIR 100 223 -39 2277 117 0 0 chr6 19213216 19213524 -170066030 + AluSx SINE Alu 1 308 -4 217 238 129 61 chr6 19213524 19213561 -170065993 + MIR SINE MIR 223 256 -6 1633 154 88 0 chr6 19214792 19215077 -170064477 - AluJb SINE Alu -2 310 1 531 224 194 18 chr6 19215347 19215517 -170064037 - MIR SINE MIR -43 219 20 25 31 0 0 chr6 19216350 19216382 -170063172 + AT_rich Low_complexity Low_complexity 1 32 0 370 169 78 0 chr6 19216632 19216709 -170062845 - MER5C DNA MER1_type -2 322 240 180 125 0 0 chr6 19217638 19217670 -170061884 + (TA)n Simple_repeat Simple_repeat 2 33 0 843 146 15 15 chr6 19217672 19217809 -170061745 + AluJo SINE Alu 1 137 -175 2775 87 19 46 chr6 19218501 19218702 -170060852 - L1MA2 LINE L1 0 6304 6118 1907 133 7 3 chr6 19218702 19218988 -170060566 + AluSx SINE Alu 10 296 -16 2775 87 19 46 chr6 19218988 19219202 -170060352 - L1MA2 LINE L1 -186 6118 5900 2422 80 0 3 chr6 19219694 19220005 -170059549 + AluY SINE Alu 1 310 -1 1995 120 39 0 chr6 19220861 19221144 -170058410 - AluSx SINE Alu -18 294 1 2402 91 3 0 chr6 19221196 19221503 -170058051 - AluSx SINE Alu -4 308 1 427 260 155 27 chr6 19221664 19221883 -170057671 - MIR SINE MIR -8 254 8 1760 172 7 14 chr6 19222143 19222439 -170057115 - AluJo SINE Alu -18 294 1 599 300 36 47 chr6 19223428 19223681 -170055873 + MIR SINE MIR 11 260 -2 1832 181 3 13 chr6 19224004 19224319 -170055235 + AluJo SINE Alu 1 312 0 223 200 15 15 chr6 19224327 19224392 -170055162 + GA-rich Low_complexity Low_complexity 4 68 0 203 355 22 36 chr6 19224997 19225135 -170054419 + L2 LINE L2 2926 3061 -211 234 277 96 48 chr6 19225323 19225489 -170054065 + L2 LINE L2 3130 3303 -10 1732 111 0 21 chr6 19225507 19225742 -170053812 + MER30 DNA MER1_type 1 230 0 2366 110 0 0 chr6 19226261 19226571 -170052983 - AluSx SINE Alu -2 310 1 1682 179 0 52 chr6 19226573 19226898 -170052656 - AluJb SINE Alu -3 309 2 476 239 18 61 chr6 19227431 19227594 -170051960 - MER103 DNA DNA 0 166 11 1101 141 0 18 chr6 19228747 19228917 -170050637 - AluSg/x SINE Alu -17 293 127 1734 155 11 33 chr6 19228997 19229330 -170050224 - MER93a LTR ERV1 0 402 29 2536 62 0 13 chr6 19229652 19229960 -170049594 - AluY SINE Alu -7 304 1 221 284 0 0 chr6 19230012 19230100 -170049454 + (TGAA)n Simple_repeat Simple_repeat 1 88 0 1649 190 30 3 chr6 19231629 19231924 -170047630 + AluJo SINE Alu 1 303 -9 41 48 0 0 chr6 19232164 19232226 -170047328 + AT_rich Low_complexity Low_complexity 1 62 0 385 283 83 0 chr6 19232817 19232937 -170046617 - MIR SINE MIR -76 186 57 1518 191 0 8 chr6 19234521 19234762 -170044792 - MER8 DNA MER2_type 0 239 1 307 315 45 0 chr6 19234846 19234957 -170044597 + L1ME LINE L1 50 165 -5954 385 291 92 72 chr6 19235232 19235731 -170043823 + L1ME LINE L1 481 989 -5130 1537 157 53 53 chr6 19235918 19236255 -170043299 + L1MC2 LINE L1 5991 6327 -17 1203 245 109 60 chr6 19236264 19236339 -170043215 + L1M4 LINE L1 3840 3910 -2236 1565 155 79 7 chr6 19236339 19236616 -170042938 + AluJo SINE Alu 1 297 -15 2379 97 0 0 chr6 19236624 19236924 -170042630 + AluSg SINE Alu 6 305 -5 1203 245 109 60 chr6 19236924 19237436 -170042118 + L1M4 LINE L1 3916 4465 -1681 2829 222 76 7 chr6 19237573 19238259 -170041295 - MER21B LTR ERV1 -52 811 79 1481 135 31 58 chr6 19238981 19239241 -170040313 - AluJo SINE Alu -19 293 41 1683 166 7 32 chr6 19239797 19239938 -170039616 + AluJo SINE Alu 1 144 -168 252 0 0 0 chr6 19239938 19239966 -170039588 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1683 166 7 32 chr6 19239966 19240132 -170039422 + AluJo SINE Alu 144 300 -12 1529 108 5 0 chr6 19240550 19240754 -170038800 - AluSp SINE Alu -12 301 97 680 121 91 0 chr6 19240785 19240884 -170038670 - AluSp SINE Alu -204 109 2 400 187 13 0 chr6 19241028 19241103 -170038451 - MER2 DNA MER2_type -269 76 1 471 201 157 7 chr6 19241707 19241911 -170037643 + MER33 DNA MER1_type 1 164 -2460 2135 138 0 3 chr6 19241911 19242215 -170037339 - AluSx SINE Alu -9 303 1 471 201 157 7 chr6 19242215 19242295 -170037259 + MER33 DNA MER1_type 164 363 0 2229 92 0 39 chr6 19242751 19243056 -170036498 + AluSq SINE Alu 1 293 -20 1009 282 50 12 chr6 19243388 19243752 -170035802 - MLT1I LTR MaLR -14 395 50 751 135 0 0 chr6 19243938 19244042 -170035512 - AluSp/q SINE Alu -14 299 196 223 279 0 0 chr6 19246335 19246378 -170033176 + MIR SINE MIR 200 242 -20 1064 198 0 0 chr6 19246819 19246986 -170032568 - FAM SINE Alu -8 167 1 1704 176 51 0 chr6 19247382 19247678 -170031876 - AluJo SINE Alu 0 312 2 207 189 0 0 chr6 19247790 19247827 -170031727 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 2047 136 7 0 chr6 19247895 19248190 -170031364 + AluSx SINE Alu 1 297 -15 2135 130 3 0 chr6 19248743 19249042 -170030512 - AluSx SINE Alu -12 300 1 1728 114 4 12 chr6 19249053 19249299 -170030255 - AluSc SINE Alu -22 287 44 1183 173 122 43 chr6 19249851 19250106 -170029448 + AluJo SINE Alu 1 275 -37 2353 98 0 3 chr6 19250106 19250412 -170029142 - AluSx SINE Alu -7 305 1 1715 141 46 33 chr6 19250501 19250807 -170028747 + AluJo SINE Alu 1 310 -2 210 291 0 76 chr6 19251183 19251262 -170028292 - L3 LINE CR1 -4 1573 1501 285 309 118 37 chr6 19251403 19251539 -170028015 - L2 LINE L2 -1 3271 3125 838 156 14 14 chr6 19252179 19252320 -170027234 + FLAM_C SINE Alu 3 143 0 350 247 31 0 chr6 19252453 19252550 -170027004 + L2 LINE L2 2899 2998 -315 347 202 223 0 chr6 19252727 19252821 -170026733 + L2 LINE L2 3199 3313 0 210 118 0 0 chr6 19253075 19253109 -170026445 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 487 302 62 26 chr6 19253143 19253335 -170026219 + L3b LINE CR1 1354 1552 -31 1900 144 18 0 chr6 19253822 19254099 -170025455 + AluJb SINE Alu 1 282 -30 306 0 0 0 chr6 19254099 19254133 -170025421 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 230 179 22 187 chr6 19254712 19254846 -170024708 + MER103 DNA DNA 13 124 -42 2391 113 0 0 chr6 19255002 19255313 -170024241 + AluSx SINE Alu 1 311 -1 4584 122 17 3 chr6 19255442 19255731 -170023823 + L1PB1 LINE L1 5493 5777 -374 369 62 0 0 chr6 19255731 19255779 -170023775 + (TG)n Simple_repeat Simple_repeat 1 48 0 4584 122 17 3 chr6 19255779 19256139 -170023415 + L1PB1 LINE L1 5777 6151 0 1160 97 0 34 chr6 19256150 19256326 -170023228 + AluSg/x SINE Alu 131 300 -12 225 0 0 0 chr6 19256468 19256493 -170023061 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 1389 181 57 37 chr6 19256865 19257164 -170022390 + AluJo SINE Alu 1 305 -7 190 359 97 19 chr6 19257509 19257612 -170021942 + MIR SINE MIR 25 135 -127 1993 132 28 0 chr6 19257823 19258112 -170021442 + AluSx SINE Alu 3 299 -13 1526 152 4 0 chr6 19258115 19258359 -170021195 - L1MA8 LINE L1 -3 6288 6044 693 171 0 0 chr6 19259498 19259615 -170019939 + L1MA8 LINE L1 6163 6279 -12 419 284 86 46 chr6 19259674 19259867 -170019687 + MIR SINE MIR 8 203 -59 777 248 27 31 chr6 19261146 19261368 -170018186 + MIR SINE MIR 13 233 -29 411 217 96 17 chr6 19261476 19261591 -170017963 + MIR3 SINE MIR 62 185 -23 2247 80 50 7 chr6 19261737 19262036 -170017518 - AluSx SINE Alu 0 312 1 602 242 258 5 chr6 19263089 19263287 -170016267 + MIR SINE MIR 12 259 -3 483 87 0 0 chr6 19263859 19263928 -170015626 + (TA)n Simple_repeat Simple_repeat 2 70 0 421 288 8 0 chr6 19264119 19264237 -170015317 - MIR SINE MIR -36 226 108 1516 170 3 42 chr6 19265982 19266265 -170013289 + AluJo SINE Alu 23 294 -18 223 27 27 27 chr6 19266933 19266970 -170012584 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 1323 165 88 25 chr6 19267635 19267772 -170011782 - AluJo SINE Alu -9 303 176 282 29 0 0 chr6 19267772 19267807 -170011747 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2241 95 0 0 chr6 19267807 19268090 -170011464 - AluY SINE Alu -28 283 1 1323 165 88 25 chr6 19268090 19268236 -170011318 - AluJo SINE Alu -135 177 1 431 310 136 0 chr6 19268382 19268566 -170010988 - MIR SINE MIR -1 261 53 826 220 6 0 chr6 19268584 19268752 -170010802 + FRAM SINE Alu 8 176 0 365 345 83 31 chr6 19268752 19269103 -170010451 + L1ME4a LINE L1 5030 5398 -748 364 266 56 28 chr6 19269287 19269430 -170010124 + L1ME4a LINE L1 5719 5865 -256 444 75 0 0 chr6 19270016 19270069 -170009485 - Alu SINE Alu -15 296 244 2196 117 7 0 chr6 19270270 19270569 -170008985 + AluSx SINE Alu 1 301 -11 346 323 81 0 chr6 19270712 19270836 -170008718 + MIR SINE MIR 58 191 -71 2083 92 4 4 chr6 19270845 19271118 -170008436 + AluSg SINE Alu 24 296 -14 23 0 0 0 chr6 19271118 19271141 -170008413 + AT_rich Low_complexity Low_complexity 1 23 0 845 165 0 0 chr6 19271303 19271436 -170008118 - FLAM_C SINE Alu -10 133 1 404 276 91 67 chr6 19272556 19272615 -170006939 - L1ME4a LINE L1 -128 5993 5937 393 117 0 0 chr6 19272615 19272675 -170006879 + (CA)n Simple_repeat Simple_repeat 1 60 0 404 276 91 67 chr6 19272675 19273146 -170006408 - L1ME4a LINE L1 -184 5937 5450 1871 132 80 47 chr6 19273146 19273509 -170006045 - THE1C LTR MaLR 0 375 1 404 276 91 67 chr6 19273509 19273528 -170006026 - L1ME4a LINE L1 -671 5450 5433 250 324 216 0 chr6 19273707 19273818 -170005736 - L2 LINE L2 0 3272 3138 234 325 58 33 chr6 19274176 19274296 -170005258 - L2 LINE L2 -11 3261 3139 1632 164 11 0 chr6 19274746 19275009 -170004545 + AluJo SINE Alu 1 266 -46 372 282 53 23 chr6 19275705 19275836 -170003718 - MER5B DNA MER1_type -13 165 31 2192 128 10 0 chr6 19275904 19276210 -170003344 + AluSx SINE Alu 1 309 -3 348 174 80 123 chr6 19276215 19276319 -170003235 - L1ME4a LINE L1 -8 6113 6015 2038 134 3 0 chr6 19276319 19276602 -170002952 + AluSx SINE Alu 1 284 -28 348 174 80 123 chr6 19276602 19276635 -170002919 - L1ME4a LINE L1 -106 6015 5982 225 0 0 0 chr6 19276836 19276861 -170002693 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 765 273 82 24 chr6 19276990 19277427 -170002127 - L1ME4a LINE L1 -220 5950 5479 258 279 61 54 chr6 19277477 19277624 -170001930 + MIR SINE MIR 79 226 -36 1741 182 7 3 chr6 19278038 19278329 -170001225 + AluJb SINE Alu 1 292 -20 350 238 61 110 chr6 19279696 19279860 -169999694 + MIR SINE MIR 35 197 -11 250 237 114 9 chr6 19279809 19279923 -169999631 - L2 LINE L2 -5 3308 3183 * 797 199 0 0 chr6 19280631 19280767 -169998787 + FLAM_C SINE Alu 2 137 -6 1867 140 61 0 chr6 19281554 19281832 -169997722 + AluSx SINE Alu 1 295 -17 759 184 0 0 chr6 19281854 19281968 -169997586 + AluJb SINE Alu 6 119 -193 1358 140 5 0 chr6 19281998 19282198 -169997356 + AluSg/x SINE Alu 105 305 -5 2784 95 31 0 chr6 19282253 19282642 -169996912 + L1MA5 LINE L1 5900 6300 0 2277 90 3 3 chr6 19282645 19282935 -169996619 + AluSq SINE Alu 1 290 -23 358 236 94 0 chr6 19282940 19283046 -169996508 + MIR SINE MIR 146 261 -1 475 259 136 34 chr6 19283655 19283891 -169995663 - MIR SINE MIR 0 262 3 865 170 0 15 chr6 19284136 19284271 -169995283 - FLAM_C SINE Alu 0 133 1 221 172 17 52 chr6 19284408 19284466 -169995088 - MIR SINE MIR -108 154 99 1318 141 0 0 chr6 19284501 19284685 -169994869 + AluSq SINE Alu 1 184 -129 216 0 0 0 chr6 19284691 19284715 -169994839 + (A)n Simple_repeat Simple_repeat 1 24 0 2284 112 56 36 chr6 19285437 19285794 -169993760 + THE1B LTR MaLR 1 364 0 383 269 131 7 chr6 19286175 19286320 -169993234 - MER103 DNA DNA -3 163 1 2348 103 3 0 chr6 19286682 19286993 -169992561 - AluSx SINE Alu 0 312 1 326 272 11 29 chr6 19287282 19287417 -169992137 - MLT1J LTR MaLR -310 201 99 1994 142 0 7 chr6 19288406 19288702 -169990852 + AluJo SINE Alu 1 294 -18 306 0 0 0 chr6 19288705 19288722 -169990832 + (CA)n Simple_repeat Simple_repeat 1 51 0 306 0 0 0 chr6 19288722 19288756 -169990798 + (CA)n Simple_repeat Simple_repeat 2 35 0 1077 208 196 43 chr6 19289223 19289392 -169990162 - MER34C LTR ERV1 0 585 443 1784 161 55 0 chr6 19289392 19289683 -169989871 + AluJb SINE Alu 1 307 -5 1077 208 196 43 chr6 19289683 19289951 -169989603 - MER34C LTR ERV1 -142 443 81 1297 156 76 15 chr6 19290501 19290764 -169988790 - L1MB8 LINE L1 0 6178 5900 2164 164 40 5 chr6 19290765 19291168 -169988386 - MLT1C LTR MaLR 0 467 51 1302 152 11 42 chr6 19291195 19291458 -169988096 - L1MB8 LINE L1 -282 5902 5648 1238 194 10 68 chr6 19291498 19291637 -169987917 - L1PB4 LINE L1 -7 6149 6034 2197 117 0 16 chr6 19291637 19291946 -169987608 + AluSx SINE Alu 1 304 -8 1238 194 10 68 chr6 19291946 19292100 -169987454 - L1PB4 LINE L1 -122 6034 5873 23 0 0 0 chr6 19292100 19292123 -169987431 + AT_rich Low_complexity Low_complexity 1 23 0 2282 77 3 27 chr6 19292422 19292722 -169986832 - AluSc SINE Alu -16 293 1 2106 109 7 17 chr6 19292775 19293077 -169986477 - AluSx SINE Alu -3 309 11 843 96 178 0 chr6 19293971 19294106 -169985448 + MSTA LTR MaLR 1 159 -269 769 95 0 9 chr6 19294105 19294210 -169985344 + MSTA LTR MaLR 325 428 0 * 203 297 68 0 chr6 19294894 19294968 -169984586 - MIR SINE MIR -2 260 182 311 203 14 0 chr6 19295160 19295229 -169984325 + MIR SINE MIR 193 262 0 1764 127 48 60 chr6 19295531 19295845 -169983709 - AluSg SINE Alu 0 310 1 2346 100 0 0 chr6 19296883 19297183 -169982371 - AluSx SINE Alu -12 300 1 1773 163 3 13 chr6 19297237 19297544 -169982010 - AluJb SINE Alu -8 304 1 2212 108 3 13 chr6 19297713 19298027 -169981527 - AluSx SINE Alu -1 311 1 252 77 0 0 chr6 19298075 19298114 -169981440 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1803 122 0 4 chr6 19298117 19298364 -169981190 - AluSx SINE Alu -28 284 39 590 246 35 53 chr6 19298682 19298910 -169980644 + L2 LINE L2 3073 3296 -17 204 40 0 0 chr6 19298914 19298939 -169980615 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 263 312 70 96 chr6 19299082 19299396 -169980158 + L2 LINE L2 2957 3262 -10 621 209 29 14 chr6 19300246 19300385 -169979169 - Charlie1 DNA MER1_type -1 2760 2620 * 889 249 38 21 chr6 19300366 19300603 -169978951 - Charlie1 DNA MER1_type -2519 242 2 832 233 85 5 chr6 19301301 19301524 -169978030 + Charlie1 DNA MER1_type 2 242 -2519 2004 111 7 4 chr6 19301525 19301804 -169977750 + AluSx SINE Alu 16 295 -17 339 240 48 75 chr6 19301955 19302101 -169977453 - MIR SINE MIR -42 220 79 401 206 22 73 chr6 19302916 19302935 -169976619 - L1MC5 LINE L1 -54 7907 7889 1752 170 0 29 chr6 19302935 19303241 -169976313 + AluJo SINE Alu 1 297 -15 401 206 22 73 chr6 19303241 19303357 -169976197 - L1MC5 LINE L1 -72 7889 7779 1797 157 3 13 chr6 19303360 19303659 -169975895 + AluJb SINE Alu 1 296 -16 1015 124 7 0 chr6 19303663 19303839 -169975715 - AluSg/x SINE Alu 0 314 138 809 209 50 34 chr6 19303847 19304144 -169975410 - L1MC5 LINE L1 -182 7779 7478 992 239 76 38 chr6 19304177 19304574 -169974980 - L1MC5 LINE L1 -466 7495 7084 2423 75 0 7 chr6 19305971 19306279 -169973275 - AluY SINE Alu -5 306 1 2058 125 17 3 chr6 19306548 19306843 -169972711 + AluSx SINE Alu 1 299 -13 973 127 0 0 chr6 19306855 19306989 -169972565 + AluJo SINE Alu 2 135 -177 2012 162 0 0 chr6 19306989 19307291 -169972263 + AluSx SINE Alu 1 302 -10 185 254 14 0 chr6 19307291 19307362 -169972192 + GA-rich Low_complexity Low_complexity 2 73 0 2077 95 41 24 chr6 19307425 19307719 -169971835 + AluSq SINE Alu 1 299 -14 1983 152 0 10 chr6 19308414 19308716 -169970838 + AluSx SINE Alu 1 299 -13 324 0 0 0 chr6 19309168 19309204 -169970350 + (CA)n Simple_repeat Simple_repeat 2 37 0 873 139 0 0 chr6 19309597 19309719 -169969835 + FLAM_C SINE Alu 2 123 -20 2196 120 7 0 chr6 19311176 19311475 -169968079 - AluSx SINE Alu -11 301 1 2054 54 0 0 chr6 19311518 19311758 -169967796 + AluY SINE Alu 61 300 -11 508 314 58 6 chr6 19311969 19312141 -169967413 + MIR SINE MIR 37 217 -45 925 154 0 0 chr6 19314140 19314270 -169965284 + AluJo/FLAM SINE Alu 2 131 -171 1000 138 14 0 chr6 19314270 19314284 -169965270 + AluJo SINE Alu 3 147 -165 1397 156 5 0 chr6 19314307 19314519 -169965035 + AluJo SINE Alu 54 266 -46 2213 93 3 35 chr6 19314539 19314852 -169964702 + AluSq SINE Alu 1 303 -10 7354 103 20 10 chr6 19314923 19315920 -169963634 + LTR13 LTR ERVK 1 1007 0 277 313 125 0 chr6 19316015 19316143 -169963411 - MIR SINE MIR -71 191 48 2339 88 7 0 chr6 19316210 19316506 -169963048 + AluSg SINE Alu 1 298 -12 2543 60 3 0 chr6 19316506 19316808 -169962746 + AluY SINE Alu 1 303 -8 458 262 175 19 chr6 19316818 19317024 -169962530 - MIR SINE MIR -11 251 14 2119 104 0 43 chr6 19317255 19317554 -169962000 - AluSq SINE Alu -22 291 6 4957 144 17 6 chr6 19317749 19318569 -169960985 + L1PA15 LINE L1 5328 6156 -9 1040 193 0 0 chr6 19318731 19318897 -169960657 + FAM SINE Alu 1 166 -9 270 176 0 0 chr6 19318907 19318958 -169960596 + GA-rich Low_complexity Low_complexity 2 52 0 325 252 110 52 chr6 19319325 19319480 -169960074 + L2 LINE L2 3150 3313 0 4006 115 6 9 chr6 19319762 19320291 -169959263 + MER1A DNA MER1_type 1 527 0 960 119 0 15 chr6 19320677 19320811 -169958743 - FLAM_C SINE Alu 0 133 2 375 331 46 20 chr6 19321058 19321209 -169958345 - L2 LINE L2 -1 3271 3117 243 0 0 0 chr6 19322343 19322370 -169957184 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2002 136 4 0 chr6 19322372 19322652 -169956902 - AluSx SINE Alu -31 281 1 4788 61 20 16 chr6 19322836 19323866 -169955688 - MER11A LTR ERVK 0 1266 1 2225 101 7 0 chr6 19323873 19324159 -169955395 - AluSx SINE Alu -24 288 1 622 255 112 66 chr6 19324308 19324524 -169955030 + L1ME4a LINE L1 5615 5820 -301 1776 158 0 42 chr6 19324524 19324834 -169954720 + AluJo SINE Alu 1 297 -15 622 255 112 66 chr6 19324834 19325099 -169954455 + L1ME4a LINE L1 5820 6118 -3 342 0 0 0 chr6 19325348 19325386 -169954168 + (CA)n Simple_repeat Simple_repeat 2 39 0 1224 105 28 22 chr6 19325915 19326096 -169953458 - AluSg/x SINE Alu 0 312 131 23 0 0 0 chr6 19326174 19326197 -169953357 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr6 19326438 19326462 -169953092 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2406 54 0 0 chr6 19326582 19326886 -169952668 - AluY SINE Alu 0 304 1 1042 174 0 87 chr6 19327447 19327523 -169952031 + AluJb SINE Alu 73 154 -158 2162 100 0 7 chr6 19327523 19327843 -169951711 + AluSg SINE Alu 1 318 0 1042 174 0 87 chr6 19327843 19328007 -169951547 + AluJb SINE Alu 154 293 -19 2530 40 7 0 chr6 19328167 19328463 -169951091 + AluSp SINE Alu 1 298 -15 183 324 90 9 chr6 19328795 19328906 -169950648 + L3 LINE CR1 1078 1197 -380 353 295 62 8 chr6 19329022 19329151 -169950403 + L2 LINE L2 3178 3313 0 1956 106 10 44 chr6 19329216 19329547 -169950007 - AluSx SINE Alu 0 321 1 2139 127 0 10 chr6 19329725 19329858 -169949696 + AluSg SINE Alu 1 134 -176 2322 98 0 0 chr6 19329858 19330153 -169949401 + AluSg SINE Alu 1 295 -15 2139 127 0 10 chr6 19330153 19330319 -169949235 + AluSg SINE Alu 134 297 -13 386 304 170 13 chr6 19330321 19330633 -169948921 + L3 LINE CR1 1213 1573 -4 1783 152 14 20 chr6 19332843 19333139 -169946415 - AluJo SINE Alu -14 298 5 391 308 91 66 chr6 19333296 19333428 -169946126 + MIR3 SINE MIR 5 145 -63 2475 73 0 0 chr6 19333428 19333731 -169945823 + AluY SINE Alu 1 303 -8 391 308 91 66 chr6 19333731 19333796 -169945758 + MIR3 SINE MIR 145 207 -1 71 21 0 10 chr6 19334175 19334217 -169945337 + AT_rich Low_complexity Low_complexity 1 42 -53 1463 86 16 0 chr6 19334217 19334404 -169945150 + AluSg SINE Alu 1 190 -120 71 21 0 10 chr6 19334404 19334457 -169945097 + AT_rich Low_complexity Low_complexity 42 95 0 794 109 0 0 chr6 19334457 19334567 -169944987 + AluSg/x SINE Alu 201 310 0 378 265 118 0 chr6 19334582 19334684 -169944870 + MIR SINE MIR 50 163 -99 1020 228 75 21 chr6 19334689 19335022 -169944532 + L1ME2 LINE L1 4871 5221 -925 2034 197 100 30 chr6 19335026 19335142 -169944412 + L1ME2 LINE L1 5581 5687 -483 2209 96 0 45 chr6 19335142 19335456 -169944098 - AluSx SINE Alu -12 300 1 2034 197 100 30 chr6 19335456 19335882 -169943672 + L1ME2 LINE L1 5687 6170 0 328 267 0 40 chr6 19335893 19335994 -169943560 + MIR SINE MIR 166 262 0 23 0 0 0 chr6 19336681 19336704 -169942850 + AT_rich Low_complexity Low_complexity 1 23 0 1843 175 3 10 chr6 19336818 19337126 -169942428 - AluJb SINE Alu -6 306 1 1931 139 7 7 chr6 19337375 19337670 -169941884 + AluSx SINE Alu 1 295 -17 384 264 76 61 chr6 19338218 19338415 -169941139 + MIR3 SINE MIR 9 208 0 2126 112 20 3 chr6 19338539 19338833 -169940721 - AluSg SINE Alu -9 301 3 2175 110 3 7 chr6 19338836 19339137 -169940417 - AluSx SINE Alu -11 301 2 227 297 103 62 chr6 19340060 19340205 -169939349 + MIR3 SINE MIR 45 195 -13 1685 181 0 10 chr6 19340326 19340624 -169938930 - AluJo SINE Alu -4 308 14 348 49 0 0 chr6 19341170 19341211 -169938343 + LTR8 LTR ERV1 547 587 -104 195 42 0 0 chr6 19341211 19341235 -169938319 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2423 75 0 3 chr6 19341734 19342028 -169937526 + AluSg SINE Alu 1 293 -17 1889 142 7 0 chr6 19343081 19343386 -169936168 - AluJo SINE Alu 0 307 1 2299 104 0 3 chr6 19344131 19344440 -169935114 - AluSx SINE Alu -4 308 1 304 253 80 67 chr6 19344472 19344622 -169934932 - MIR SINE MIR -37 225 74 1192 166 4 26 chr6 19344812 19345041 -169934513 - AluJo SINE Alu -3 309 86 201 339 138 0 chr6 19346113 19346222 -169933332 - MER5A DNA MER1_type -5 184 61 1644 155 23 20 chr6 19346312 19346615 -169932939 - AluJo SINE Alu -4 308 5 281 250 15 0 chr6 19347376 19347444 -169932110 - MER5A DNA MER1_type -71 118 50 615 292 62 19 chr6 19347720 19347980 -169931574 + L3 LINE CR1 1305 1575 -2 2121 108 0 0 chr6 19348089 19348401 -169931153 - AluSg1 SINE Alu 0 312 1 2228 115 0 3 chr6 19348522 19348826 -169930728 + AluSc SINE Alu 1 303 -6 1755 159 10 13 chr6 19348832 19349133 -169930421 + AluJo SINE Alu 5 304 -8 770 208 0 0 chr6 19349134 19349259 -169930295 + FLAM_C SINE Alu 3 127 -16 240 234 164 32 chr6 19350249 19350387 -169929167 - MIR SINE MIR -67 141 30 2405 55 7 23 chr6 19350711 19351021 -169928533 + AluY SINE Alu 1 305 -6 2667 51 3 3 chr6 19351185 19351498 -169928056 + AluSp SINE Alu 1 313 0 198 0 0 0 chr6 19351498 19351520 -169928034 + (TA)n Simple_repeat Simple_repeat 2 23 0 984 272 8 12 chr6 19351971 19352221 -169927333 - MIR SINE MIR 0 262 14 1886 140 11 4 chr6 19352590 19352896 -169926658 - AluSg SINE Alu 0 309 2 22 56 0 0 chr6 19352898 19352934 -169926620 + AT_rich Low_complexity Low_complexity 1 36 0 22 88 0 0 chr6 19353011 19353068 -169926486 + AT_rich Low_complexity Low_complexity 1 57 0 2118 97 13 30 chr6 19353073 19353373 -169926181 + AluSx SINE Alu 1 295 -17 607 271 125 7 chr6 19354158 19354439 -169925115 + L1M4 LINE L1 2708 3021 -3125 2286 88 14 0 chr6 19354582 19354878 -169924676 + AluSp SINE Alu 4 303 -10 21 0 0 0 chr6 19354895 19354916 -169924638 + AT_rich Low_complexity Low_complexity 1 21 0 585 130 0 0 chr6 19354941 19355018 -169924536 + FLAM_C SINE Alu 37 113 -30 253 173 210 12 chr6 19355028 19355109 -169924445 + L1M4 LINE L1 3364 3460 -2686 289 217 0 0 chr6 19355214 19355274 -169924280 + L1M4 LINE L1 4604 4663 -1483 2299 107 3 0 chr6 19355965 19356263 -169923291 - AluSq SINE Alu -12 301 3 257 328 46 23 chr6 19356475 19356606 -169922948 - L2 LINE L2 -6 3307 3174 298 310 62 31 chr6 19356718 19356847 -169922707 - MER94 DNA DNA 0 134 2 965 167 14 45 chr6 19358325 19358547 -169921007 - AluJo SINE Alu -13 299 85 771 215 0 0 chr6 19359182 19359312 -169920242 - FLAM_C SINE Alu -3 130 1 23 33 0 0 chr6 19359816 19359846 -169919708 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr6 19360372 19360395 -169919159 + (A)n Simple_repeat Simple_repeat 1 23 0 297 281 23 22 chr6 19361993 19362107 -169917447 - MIR SINE MIR -40 168 51 2421 91 0 0 chr6 19363203 19363501 -169916053 + AluSq SINE Alu 2 299 -14 836 206 0 7 chr6 19364038 19364184 -169915370 + FRAM SINE Alu 1 145 -31 191 32 65 0 chr6 19364185 19364216 -169915338 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 2210 88 7 14 chr6 19364219 19364501 -169915053 + AluSp SINE Alu 1 282 -31 325 0 0 0 chr6 19364501 19364537 -169915017 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2210 88 7 14 chr6 19364537 19364550 -169915004 + AluSp SINE Alu 282 294 -19 383 259 26 35 chr6 19364767 19364883 -169914671 + L2 LINE L2 3156 3270 -2 719 166 46 34 chr6 19366962 19367137 -169912417 - MER104 DNA MER2_type 0 180 4 1793 132 50 20 chr6 19367251 19367554 -169912000 - AluSx SINE Alu 0 312 1 2224 101 3 0 chr6 19368245 19368543 -169911011 + AluSx SINE Alu 1 299 -13 728 191 0 0 chr6 19368554 19368669 -169910885 + FLAM_A SINE Alu 2 116 -17 37 0 0 0 chr6 19368670 19368707 -169910847 + AT_rich Low_complexity Low_complexity 1 37 0 2061 108 3 3 chr6 19369074 19369369 -169910185 + AluSp SINE Alu 1 295 -18 749 177 0 8 chr6 19369377 19369501 -169910053 + FLAM_C SINE Alu 2 124 -19 24 0 0 0 chr6 19370293 19370317 -169909237 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr6 19371534 19371557 -169907997 + (TG)n Simple_repeat Simple_repeat 2 24 0 577 231 51 39 chr6 19371680 19371836 -169907718 - MIR SINE MIR 0 262 105 2457 46 3 3 chr6 19372874 19373180 -169906374 + AluY SINE Alu 1 306 -5 2344 97 0 0 chr6 19373249 19373559 -169905995 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr6 19373559 19373581 -169905973 + AT_rich Low_complexity Low_complexity 1 22 0 2200 104 10 3 chr6 19373701 19374010 -169905544 - AluSq SINE Alu -2 311 1 2321 57 7 3 chr6 19374110 19374407 -169905147 - AluY SINE Alu -13 298 1 188 322 167 0 chr6 19374982 19375072 -169904482 + MIR3 SINE MIR 55 159 -49 1307 160 71 15 chr6 19375073 19375342 -169904212 + Charlie1b DNA MER1_type 1 284 -239 26 30 0 0 chr6 19375419 19375452 -169904102 + AT_rich Low_complexity Low_complexity 1 33 0 2120 129 0 0 chr6 19375563 19375873 -169903681 + AluSx SINE Alu 1 310 -2 1191 123 0 0 chr6 19375873 19376043 -169903511 + AluSg/x SINE Alu 132 301 -9 1377 182 45 38 chr6 19376141 19376496 -169903058 - MLT1F1 LTR MaLR -151 391 1 1254 183 3 69 chr6 19376733 19377022 -169902532 - AluJb SINE Alu -42 270 1 26 0 0 0 chr6 19377400 19377426 -169902128 + AT_rich Low_complexity Low_complexity 1 26 0 2026 113 3 10 chr6 19378063 19378355 -169901199 + AluSq SINE Alu 1 290 -23 653 191 29 52 chr6 19378793 19378947 -169900607 - FLAM_C SINE Alu 0 151 1 2007 134 3 0 chr6 19378985 19379284 -169900270 + AluSx SINE Alu 1 300 -12 531 244 23 8 chr6 19379314 19379445 -169900109 - MIR SINE MIR -49 213 81 2082 71 57 4 chr6 19379482 19379763 -169899791 + AluY SINE Alu 1 296 -15 2056 84 70 0 chr6 19379778 19380065 -169899489 + AluSg SINE Alu 1 307 -3 2092 96 3 20 chr6 19380141 19380276 -169899278 + AluSx SINE Alu 1 137 -175 1958 110 4 7 chr6 19380276 19380579 -169898975 + AluSc SINE Alu 1 302 0 2396 65 3 0 chr6 19380579 19380887 -169898667 + AluY SINE Alu 2 310 -1 2092 96 3 20 chr6 19380887 19381052 -169898502 + AluSx SINE Alu 135 298 -14 1977 129 0 3 chr6 19381313 19381608 -169897946 - AluSx SINE Alu -18 294 1 2177 86 14 0 chr6 19381674 19381964 -169897590 + AluSx SINE Alu 1 294 -18 2251 54 44 7 chr6 19381965 19382260 -169897294 + AluY SINE Alu 1 306 -5 2266 158 84 17 chr6 19382273 19382707 -169896847 + L1MC3 LINE L1 7120 7588 -197 2170 101 0 0 chr6 19382707 19383003 -169896551 + AluSg1 SINE Alu 1 296 -13 2266 158 84 17 chr6 19383003 19383030 -169896524 + L1MC3 LINE L1 7588 7612 -173 306 0 0 0 chr6 19383031 19383065 -169896489 + (TG)n Simple_repeat Simple_repeat 2 35 0 685 129 0 102 chr6 19383126 19383273 -169896281 + AluJb SINE Alu 181 312 0 195 268 49 37 chr6 19383409 19383491 -169896063 - L2 LINE L2 -896 2418 2336 2142 115 0 0 chr6 19383610 19383906 -169895648 - AluSg SINE Alu -14 296 1 388 291 120 6 chr6 19384042 19384200 -169895354 - MIR SINE MIR -56 206 31 2032 124 0 7 chr6 19384210 19384508 -169895046 + AluSx SINE Alu 1 296 -16 1896 168 0 0 chr6 19384628 19384932 -169894622 - AluJb SINE Alu -8 304 1 5746 130 82 99 chr6 19384969 19386557 -169892997 + pTR5 LTR ERV1 743 2438 0 638 137 0 76 chr6 19386573 19386704 -169892850 + FRAM SINE Alu 43 163 -13 200 281 49 12 chr6 19386759 19386841 -169892713 + L2 LINE L2 2973 3057 -215 378 316 43 48 chr6 19387371 19387476 -169892078 - L1M4 LINE L1 -1328 4818 4714 1662 141 53 3 chr6 19387476 19387759 -169891795 - AluJb SINE Alu -15 297 1 378 316 43 48 chr6 19387759 19387810 -169891744 - L1M4 LINE L1 -1432 4714 4661 750 187 0 8 chr6 19387810 19387944 -169891610 - FLAM_A SINE Alu 0 133 1 378 316 43 48 chr6 19387944 19387973 -169891581 - L1M4 LINE L1 -1485 4661 4633 1809 114 48 4 chr6 19387986 19388292 -169891262 + AluSq SINE Alu 1 318 0 382 184 158 0 chr6 19388435 19388511 -169891043 + L1M2a LINE L1 1 88 -7080 732 86 0 0 chr6 19388511 19388604 -169890950 - AluSx SINE Alu -19 290 198 872 54 18 0 chr6 19388605 19388717 -169890837 - AluSx SINE Alu -198 114 1 5209 199 99 98 chr6 19388717 19389300 -169890254 + L1M2a LINE L1 80 661 -6507 2100 101 3 3 chr6 19389300 19389606 -169889948 + AluSx SINE Alu 1 306 -6 5209 199 99 98 chr6 19389606 19390809 -169888745 + L1M2a LINE L1 661 1861 -5307 1677 115 12 112 chr6 19390809 19391147 -169888407 + AluSq SINE Alu 1 304 -9 518 233 92 0 chr6 19391151 19391271 -169888283 + FLAM_A SINE Alu 1 131 -11 5209 199 99 98 chr6 19391271 19391566 -169887988 + L1M2a LINE L1 1863 2229 -4939 207 280 85 42 chr6 19392199 19392317 -169887237 + MIR SINE MIR 84 206 -56 246 51 51 0 chr6 19392630 19392669 -169886885 + L1M2a LINE L1 2235 2275 -4893 * 3219 154 32 15 chr6 19392662 19393279 -169886275 + L1M2a LINE L1 2584 3211 -3957 743 73 0 0 chr6 19393281 19393377 -169886177 + HY3 scRNA scRNA 5 100 -1 1771 127 49 7 chr6 19393445 19393729 -169885825 + AluSx SINE Alu 1 296 -16 1014 182 4 74 chr6 19393735 19393831 -169885723 + L1M2a LINE L1 3234 3335 -3832 1800 172 0 0 chr6 19393831 19394128 -169885426 + AluJo SINE Alu 6 302 -10 1014 182 4 74 chr6 19394128 19394289 -169885265 + L1M2a LINE L1 3335 3473 -3694 5511 71 22 56 chr6 19394302 19395304 -169884250 + SVA Other Other 1 866 -592 5990 60 48 8 chr6 19395436 19396264 -169883290 + SVA Other Other 518 1378 -8 547 196 42 65 chr6 19396267 19396339 -169883215 + L1M2a LINE L1 3465 3537 -3630 2218 103 3 0 chr6 19396339 19396639 -169882915 + AluSp SINE Alu 1 301 -12 547 196 42 65 chr6 19396639 19396734 -169882820 + L1M2a LINE L1 3537 3628 -3539 1082 61 0 0 chr6 19396734 19396866 -169882688 + AluY SINE Alu 1 132 -179 881 160 82 124 chr6 19396866 19397172 -169882382 + L1M2a LINE L1 3608 3900 -3267 1971 107 0 48 chr6 19397172 19397481 -169882073 + AluSq SINE Alu 1 294 -19 248 146 0 0 chr6 19397482 19397523 -169882031 + L1M2a LINE L1 4076 4116 -3051 773 263 65 65 chr6 19397525 19397813 -169881741 + L1MEd LINE L1 960 1247 -5169 1599 167 44 0 chr6 19397813 19398088 -169881466 + AluJo SINE Alu 3 289 -23 773 263 65 65 chr6 19398088 19398384 -169881170 + L1MEd LINE L1 1246 1544 -4872 373 251 29 3 chr6 19398398 19398508 -169881046 + L1MEd LINE L1 1415 1713 -4894 1779 155 0 7 chr6 19498521 19498798 -169780756 + AluJo SINE Alu 30 304 -8 819 173 79 0 chr6 19498882 19499069 -169780485 - FRAM SINE Alu 0 194 1 1618 254 79 31 chr6 19499070 19499676 -169779878 - HAL1 LINE L1 -1806 701 67 295 211 0 0 chr6 19499829 19499886 -169779668 + MER4D LTR ERV1 1 57 -846 652 78 0 0 chr6 19499887 19499977 -169779577 - AluSp/q SINE Alu -3 310 221 2717 144 26 1 chr6 19499979 19500605 -169778949 + MER72 LTR ERV1 49 722 0 1384 162 22 0 chr6 19501240 19501462 -169778092 - AluJo SINE Alu -21 291 65 458 195 66 25 chr6 19501680 19501821 -169777733 - L1ME3 LINE L1 0 6164 6015 1264 160 0 18 chr6 19501878 19502103 -169777451 + AluJo SINE Alu 84 304 -8 307 191 35 29 chr6 19502403 19502576 -169776978 + C-rich Low_complexity Low_complexity 3 176 0 1967 92 4 11 chr6 19503974 19504235 -169775319 + AluSx SINE Alu 39 297 -15 226 238 40 26 chr6 19504876 19505027 -169774527 + (TA)n Simple_repeat Simple_repeat 1 153 0 2498 59 3 3 chr6 19505112 19505415 -169774139 - AluY SINE Alu -8 303 1 286 82 20 0 chr6 19505598 19505647 -169773907 + Alu SINE Alu 259 308 0 2297 107 0 0 chr6 19506271 19506569 -169772985 - AluSg SINE Alu -12 298 1 435 274 78 0 chr6 19506761 19506914 -169772640 - MIR SINE MIR -2 260 96 679 175 32 8 chr6 19506936 19507062 -169772492 + FLAM_A SINE Alu 5 133 0 2304 85 0 10 chr6 19507758 19508053 -169771501 + AluY SINE Alu 1 292 -19 369 136 45 0 chr6 19508133 19508199 -169771355 - AluS SINE Alu 0 301 233 965 163 0 19 chr6 19508199 19508359 -169771195 - AluJo SINE Alu -155 157 1 2146 124 0 3 chr6 19509343 19509641 -169769913 + AluSx SINE Alu 1 297 -15 463 191 75 11 chr6 19510447 19510541 -169769013 - AluSc SINE Alu -10 299 200 870 111 0 0 chr6 19510546 19510663 -169768891 - FLAM_C SINE Alu -15 118 2 2091 241 78 72 chr6 19510707 19511439 -169768115 - L1MEc LINE L1 -2956 3259 2533 1924 147 0 42 chr6 19511439 19511745 -169767809 - AluSx SINE Alu -19 293 1 2091 241 78 72 chr6 19511745 19511962 -169767592 - L1MEc LINE L1 -3682 2533 2339 2047 111 42 0 chr6 19511962 19512250 -169767304 - AluSx SINE Alu -12 300 1 2091 241 78 72 chr6 19512250 19512417 -169767137 - L1MEc LINE L1 -3876 2339 2174 1704 81 14 0 chr6 19512433 19512643 -169766911 - AluY SINE Alu -7 304 92 333 0 0 0 chr6 19512687 19512724 -169766830 + (A)n Simple_repeat Simple_repeat 1 37 0 2105 143 3 10 chr6 19512981 19513295 -169766259 + AluSx SINE Alu 1 312 0 814 181 12 44 chr6 19513309 19513469 -169766085 + FAM SINE Alu 1 45 -4 1361 170 49 99 chr6 19514003 19514327 -169765227 + AluJo SINE Alu 1 308 -4 2345 84 3 7 chr6 19514516 19514814 -169764740 + AluSc SINE Alu 1 297 -12 2011 145 0 0 chr6 19515099 19515389 -169764165 - AluJb SINE Alu -18 294 5 1638 198 10 0 chr6 19515391 19515679 -169763875 - AluJo SINE Alu -21 291 1 3130 194 79 36 chr6 19515736 19516485 -169763069 - L1MB5 LINE L1 -1 6170 5454 2156 128 0 0 chr6 19516485 19516791 -169762763 - AluSx SINE Alu -6 306 1 3130 194 79 36 chr6 19516791 19516854 -169762700 - L1MB5 LINE L1 -717 5454 5395 2135 107 31 3 chr6 19516854 19517145 -169762409 - AluSq SINE Alu -14 299 1 3130 194 79 36 chr6 19517145 19517477 -169762077 - L1MB5 LINE L1 -776 5395 4929 2055 108 35 7 chr6 19517528 19517816 -169761738 - AluSx SINE Alu -11 301 6 1316 153 47 0 chr6 19517819 19518055 -169761499 - L1MD3 LINE L1 -20 7975 7729 1888 160 3 3 chr6 19518106 19518399 -169761155 - AluJb SINE Alu -19 293 1 2579 65 0 0 chr6 19518432 19518739 -169760815 - AluY SINE Alu -4 307 1 264 278 126 84 chr6 19519195 19519576 -169759978 - MLT1L LTR MaLR -2 613 217 396 117 0 0 chr6 19519976 19520036 -169759518 - L1MB7 LINE L1 -19 6165 6106 1119 115 148 60 chr6 19520042 19520259 -169759295 + MER46A DNA MER2_type 1 236 0 22 70 0 0 chr6 19520321 19520364 -169759190 + AT_rich Low_complexity Low_complexity 1 43 0 1950 200 108 47 chr6 19520377 19520427 -169759127 - L1M4 LINE L1 -495 5683 5637 2420 97 0 0 chr6 19520427 19520726 -169758828 + AluSq SINE Alu 1 299 -14 1950 200 108 47 chr6 19520726 19521401 -169758153 - L1M4 LINE L1 -541 5637 5004 216 0 0 0 chr6 19521401 19521425 -169758129 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 2325 75 0 0 chr6 19521425 19521703 -169757851 - AluSg SINE Alu -32 278 1 1950 200 108 47 chr6 19521703 19522028 -169757526 - L1M4 LINE L1 -1173 5005 4530 227 211 0 0 chr6 19522028 19522066 -169757488 + MER58A DNA MER1_type 2 39 -185 10727 164 23 17 chr6 19522089 19525158 -169754396 - L1PB1 LINE L1 0 6151 3069 225 0 0 0 chr6 19525165 19525190 -169754364 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 869 136 0 0 chr6 19525202 19525327 -169754227 - FLAM_C SINE Alu -17 126 2 265 143 20 20 chr6 19525331 19525380 -169754174 + MER58A DNA MER1_type 44 92 -15 661 150 231 7 chr6 19525395 19525542 -169754012 + MER58A DNA MER1_type 44 223 -1 2687 272 66 40 chr6 19525543 19525709 -169753845 - L1M4 LINE L1 -1612 4534 4374 2238 98 3 10 chr6 19525709 19526005 -169753549 - AluSx SINE Alu -18 294 1 2223 112 7 3 chr6 19526007 19526310 -169753244 - AluSg SINE Alu -6 304 1 2687 272 66 40 chr6 19526310 19527369 -169752185 - L1M4 LINE L1 -1772 4374 3274 1146 194 0 42 chr6 19527471 19527708 -169751846 - AluJo SINE Alu 0 312 86 2124 129 0 0 chr6 19528190 19528485 -169751069 - AluSx SINE Alu -17 295 1 1030 253 96 73 chr6 19528717 19529106 -169750448 - HAL1b LINE L1 -3 1345 966 1759 148 69 0 chr6 19529106 19529383 -169750171 + AluJo SINE Alu 5 300 -12 1030 253 96 73 chr6 19529383 19529756 -169749798 - HAL1b LINE L1 -382 966 566 26 0 0 0 chr6 19529935 19529961 -169749593 + AT_rich Low_complexity Low_complexity 1 26 0 533 288 62 65 chr6 19530057 19530152 -169749402 - L1MC4a LINE L1 -1900 5908 5814 1688 154 44 17 chr6 19530152 19530450 -169749104 - AluJo SINE Alu -6 306 1 533 288 62 65 chr6 19530450 19530660 -169748894 - L1MC4a LINE L1 -1994 5814 5604 2311 93 30 3 chr6 19530878 19531179 -169748375 - AluSq SINE Alu -4 309 1 568 274 72 48 chr6 19531251 19531583 -169747971 - L1ME3A LINE L1 -218 5952 5613 1510 213 75 65 chr6 19531606 19531815 -169747739 - L1ME3A LINE L1 -5 6165 5960 180 0 0 0 chr6 19531815 19531835 -169747719 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1510 213 75 65 chr6 19531835 19531890 -169747664 - L1ME3A LINE L1 -210 5960 5907 2408 92 0 0 chr6 19531890 19532194 -169747360 - AluSx SINE Alu -8 304 1 1510 213 75 65 chr6 19532194 19532350 -169747204 - L1ME3A LINE L1 -263 5907 5754 1849 157 43 0 chr6 19532350 19532649 -169746905 - AluJo SINE Alu 0 312 1 1510 213 75 65 chr6 19532649 19532812 -169746742 - L1ME3A LINE L1 -416 5754 5574 2014 123 0 63 chr6 19532924 19533241 -169746313 - AluSx SINE Alu -15 297 1 2563 111 24 8 chr6 19534200 19534569 -169744985 - THE1C LTR MaLR 0 375 1 243 0 0 0 chr6 19534593 19534620 -169744934 + (CA)n Simple_repeat Simple_repeat 2 28 0 910 123 0 0 chr6 19535722 19535852 -169743702 + FLAM_C SINE Alu 1 130 -3 21 0 0 0 chr6 19535855 19535876 -169743678 + AT_rich Low_complexity Low_complexity 1 21 0 1090 171 0 0 chr6 19536224 19536400 -169743154 - AluSg/x SINE Alu -3 309 134 2368 106 0 0 chr6 19536400 19536703 -169742851 - AluSx SINE Alu -9 303 1 727 236 185 35 chr6 19536912 19537280 -169742274 + L1ME4a LINE L1 5476 5898 -223 2118 113 3 23 chr6 19537483 19537783 -169741771 + AluSg SINE Alu 1 294 -16 842 152 17 73 chr6 19537805 19537930 -169741624 + L1MB2 LINE L1 6002 6132 -39 2431 59 0 33 chr6 19537930 19538235 -169741319 + AluY SINE Alu 1 295 -16 2010 149 3 0 chr6 19538238 19538533 -169741021 + AluSx SINE Alu 1 296 -16 842 152 17 73 chr6 19538533 19538581 -169740973 + L1MB2 LINE L1 6134 6169 -2 1006 165 85 0 chr6 19539094 19539294 -169740260 - MER20 DNA MER1_type 0 219 3 1955 160 0 10 chr6 19539596 19539889 -169739665 + AluJb SINE Alu 1 290 -22 849 132 0 0 chr6 19540250 19540371 -169739183 + FLAM_A SINE Alu 8 128 -14 2305 101 0 7 chr6 19540530 19540838 -169738716 + AluSq SINE Alu 1 306 -7 1868 169 16 10 chr6 19540914 19541221 -169738333 - AluJo SINE Alu -3 309 1 2321 93 0 10 chr6 19541496 19541796 -169737758 - AluSq SINE Alu -16 297 1 1006 29 7 79 chr6 19541797 19541936 -169737618 - AluSq/x SINE Alu -177 135 7 2897 158 42 52 chr6 19542227 19542283 -169737271 - L1MB5 LINE L1 0 6174 6119 808 129 0 58 chr6 19542283 19542422 -169737132 - FLAM_C SINE Alu -2 131 1 2897 158 42 52 chr6 19542422 19542961 -169736593 - L1MB5 LINE L1 -55 6119 5585 4780 122 38 44 chr6 19542992 19543071 -169736483 - L1MA8 LINE L1 -5 6286 6208 2378 97 3 3 chr6 19543071 19543379 -169736175 + AluSx SINE Alu 1 308 -4 4780 122 38 44 chr6 19543379 19544211 -169735343 - L1MA8 LINE L1 -83 6208 5380 1634 174 88 9 chr6 19544214 19544531 -169735023 - MER2 DNA MER2_type -3 342 1 433 206 88 0 chr6 19544531 19544633 -169734921 - L1MA8 LINE L1 -919 5381 5271 1875 121 110 0 chr6 19545542 19545815 -169733739 - AluSx SINE Alu -9 303 1 22 35 0 0 chr6 19545961 19545990 -169733564 + AT_rich Low_complexity Low_complexity 1 29 0 1007 135 0 0 chr6 19546007 19546148 -169733406 - AluSq/x SINE Alu -172 141 1 756 53 0 0 chr6 19546187 19546282 -169733272 + AluY SINE Alu 212 306 -5 1600 153 0 93 chr6 19546505 19546826 -169732728 + AluJb SINE Alu 1 291 -21 28 0 0 0 chr6 19547319 19547347 -169732207 + AT_rich Low_complexity Low_complexity 1 28 0 1942 149 17 0 chr6 19547504 19547793 -169731761 - AluSx SINE Alu -18 294 1 628 137 29 127 chr6 19548454 19548659 -169730895 + MER53 DNA DNA 1 185 -4 1602 157 28 25 chr6 19549743 19550029 -169729525 + AluJo SINE Alu 6 292 -20 967 161 37 0 chr6 19550756 19550917 -169728637 + FRAM SINE Alu 1 167 -9 2253 114 3 0 chr6 19551191 19551490 -169728064 + AluSx SINE Alu 2 301 -11 1749 150 39 0 chr6 19551835 19552115 -169727439 + AluJb SINE Alu 14 304 -8 366 0 0 0 chr6 19552916 19552960 -169726594 + L1PA3 LINE L1 6109 6152 -3 2092 70 4 4 chr6 19553331 19553588 -169725966 + AluSc SINE Alu 1 257 -52 23 0 0 0 chr6 19553594 19553617 -169725937 + AT_rich Low_complexity Low_complexity 1 23 0 1804 167 0 3 chr6 19553853 19554135 -169725419 + AluJo SINE Alu 1 281 -31 952 130 0 0 chr6 19554211 19554342 -169725212 - FLAM_C SINE Alu -10 133 3 252 86 0 0 chr6 19556213 19556248 -169723306 + (TA)n Simple_repeat Simple_repeat 1 35 0 2498 62 0 31 chr6 19556252 19556573 -169722981 - AluY SINE Alu 0 311 1 373 216 45 11 chr6 19556581 19556669 -169722885 - MER103 DNA DNA -73 93 3 1101 141 0 12 chr6 19557223 19557393 -169722161 - FRAM SINE Alu -10 166 1 327 122 0 0 chr6 19557399 19557448 -169722106 + MER5B DNA MER1_type 126 174 -4 1842 155 9 29 chr6 19557962 19558278 -169721276 - AluJo SINE Alu 0 312 3 1827 146 0 7 chr6 19558339 19558619 -169720935 + AluJo SINE Alu 5 282 -30 2373 83 10 0 chr6 19559564 19559864 -169719690 - AluSx SINE Alu -9 303 1 294 146 0 0 chr6 19559959 19560007 -169719547 - MER91A DNA MER1_type -147 49 2 2251 114 3 9 chr6 19560774 19561089 -169718465 + AluSq SINE Alu 1 313 0 2455 92 0 9 chr6 19562247 19562562 -169716992 + AluSx SINE Alu 1 312 0 2242 167 8 0 chr6 19562908 19563292 -169716262 - MLT1B LTR MaLR -3 387 1 2194 91 0 4 chr6 19563685 19563991 -169715563 - AluSx SINE Alu 0 314 10 752 222 296 0 chr6 19564166 19564369 -169715185 + Tigger7 DNA MER2_type 1 263 -2224 * 1192 136 79 0 chr6 19564366 19564580 -169714974 + Tigger7 DNA MER2_type 2261 2491 0 2419 69 3 16 chr6 19564995 19565301 -169714253 - AluY SINE Alu -9 302 1 668 269 133 70 chr6 19565553 19565740 -169713814 - HAL1 LINE L1 -6 2501 2327 1927 156 3 10 chr6 19565740 19566042 -169713512 - AluJo SINE Alu -12 300 1 668 269 133 70 chr6 19566042 19566512 -169713042 - HAL1 LINE L1 -180 2327 1791 2504 68 0 10 chr6 19566512 19566821 -169712733 - AluY SINE Alu -5 306 1 668 269 133 70 chr6 19566821 19566894 -169712660 - HAL1 LINE L1 -716 1791 1724 329 235 184 14 chr6 19566968 19567185 -169712369 - HAL1 LINE L1 -1244 1263 1010 261 308 62 8 chr6 19567610 19567740 -169711814 - HAL1 LINE L1 -2134 373 237 2151 100 28 0 chr6 19567891 19568182 -169711372 + AluSx SINE Alu 1 299 -13 1646 112 115 15 chr6 19568390 19568659 -169710895 - AluSx SINE Alu -11 301 6 22 0 0 0 chr6 19570953 19570975 -169708579 + GC_rich Low_complexity Low_complexity 1 22 0 1616 184 0 4 chr6 19574116 19574385 -169705169 + AluJb SINE Alu 1 268 -44 7170 77 43 2 chr6 19574385 19575316 -169704238 + LTR5 LTR ERVK 1 969 0 920 196 26 78 chr6 19575734 19575964 -169703590 - MER58A DNA MER1_type -3 221 4 40211 57 36 2 chr6 19576009 19581899 -169697655 + L1PA5 LINE L1 3 6100 -54 204 40 0 0 chr6 19581899 19581924 -169697630 + (TA)n Simple_repeat Simple_repeat 1 25 0 40211 57 36 2 chr6 19581924 19581981 -169697573 + L1PA5 LINE L1 6100 6154 0 206 282 20 128 chr6 19583071 19583266 -169696288 + L2 LINE L2 3031 3204 -68 876 145 30 0 chr6 19583277 19583408 -169696146 - AluJo SINE Alu -177 135 1 221 308 62 0 chr6 19583410 19583475 -169696079 + L2 LINE L2 3244 3312 -1 368 246 109 0 chr6 19583874 19583984 -169695570 + L2 LINE L2 3192 3313 0 22 0 0 0 chr6 19584227 19584249 -169695305 + AT_rich Low_complexity Low_complexity 1 22 0 789 153 15 8 chr6 19584424 19584555 -169694999 + Tigger4(Zombi) DNA MER2_type 1 132 -2599 495 250 9 9 chr6 19584565 19584677 -169694877 + FRAM SINE Alu 1 112 -64 848 103 146 65 chr6 19584690 19584875 -169694679 + Tigger4(Zombi) DNA MER2_type 2532 2731 0 2322 94 0 7 chr6 19585480 19585788 -169693766 - AluSx SINE Alu -6 306 1 349 256 12 0 chr6 19585795 19585877 -169693677 + L2 LINE L2 3229 3311 -2 335 255 151 9 chr6 19585873 19585979 -169693575 - MIR SINE MIR -130 132 12 * 2037 120 41 0 chr6 19586036 19586327 -169693227 + AluSc SINE Alu 1 303 -6 2249 87 3 20 chr6 19586544 19586843 -169692711 - AluSp SINE Alu -19 294 1 669 161 113 40 chr6 19586964 19587088 -169692466 - FLAM_A SINE Alu 0 133 1 452 294 234 19 chr6 19587988 19588202 -169691352 + MIR SINE MIR 3 262 0 795 180 0 0 chr6 19588294 19588416 -169691138 + FLAM_C SINE Alu 2 123 -10 805 254 93 10 chr6 19589292 19589485 -169690069 - MER58C DNA MER1_type -5 210 2 1427 148 121 0 chr6 19589733 19589997 -169689557 + AluSg SINE Alu 1 296 -14 4436 168 25 18 chr6 19590002 19590730 -169688824 + MER44D DNA MER2_type 1 605 0 782 174 223 38 chr6 19591414 19591598 -169687956 + AluJo SINE Alu 70 287 -25 467 320 67 67 chr6 19592680 19593024 -169686530 + MLT1J LTR MaLR 105 448 -63 2493 117 40 6 chr6 19593391 19593743 -169685811 + THE1B LTR MaLR 1 364 0 189 250 125 14 chr6 19594386 19594458 -169685096 - MIR3 SINE MIR -44 164 85 2221 96 7 3 chr6 19595298 19595591 -169683963 - AluSx SINE Alu -18 294 1 634 224 154 33 chr6 19595683 19595897 -169683657 - MIR SINE MIR 0 262 23 361 90 34 18 chr6 19596384 19596486 -169683068 + MER20 DNA MER1_type 31 195 -24 2292 60 0 0 chr6 19597836 19598118 -169681436 + AluY SINE Alu 30 311 0 244 95 0 0 chr6 19598196 19598238 -169681316 - AluSx SINE Alu 0 308 267 1327 110 6 0 chr6 19598241 19598414 -169681140 - AluSx SINE Alu -138 174 1 1788 206 3 0 chr6 19599847 19600158 -169679396 + AluJb SINE Alu 1 312 0 4127 169 134 108 chr6 19600260 19601351 -169678203 + Charlie1a DNA MER1_type 5 1067 -1694 1377 196 55 0 chr6 19601351 19601622 -169677932 - AluJo SINE Alu -26 286 1 4127 169 134 108 chr6 19601622 19601668 -169677886 + Charlie1a DNA MER1_type 1067 1110 -1651 2134 117 0 7 chr6 19601668 19601995 -169677559 + AluSx SINE Alu 1 312 0 4127 169 134 108 chr6 19601995 19602271 -169677283 + Charlie1a DNA MER1_type 1110 1455 0 2438 70 10 0 chr6 19603606 19603906 -169675648 - AluSp SINE Alu -10 303 1 1943 149 6 19 chr6 19605049 19605365 -169674189 + AluJb SINE Alu 1 312 0 303 333 30 15 chr6 19605373 19605505 -169674049 + MIR3 SINE MIR 36 169 -39 794 62 0 0 chr6 19606673 19606769 -169672785 + AluY SINE Alu 6 101 -210 243 0 0 0 chr6 19606769 19606796 -169672758 + Alu SINE Alu 70 96 -212 1968 69 0 4 chr6 19606799 19607044 -169672510 + AluY SINE Alu 68 311 0 198 288 24 56 chr6 19607540 19607665 -169671889 + L2 LINE L2 2159 2279 -1035 1939 131 66 19 chr6 19607676 19607996 -169671558 + MER2 DNA MER2_type 9 343 -2 350 312 55 15 chr6 19607997 19608199 -169671355 + L2 LINE L2 2281 2490 -824 2728 134 140 110 chr6 19608251 19608338 -169671216 + MSTB-int LTR MaLR 942 1025 -626 1745 163 54 0 chr6 19608338 19608632 -169670922 + AluJb SINE Alu 1 310 -2 2728 134 140 110 chr6 19608632 19608910 -169670644 + MSTB-int LTR MaLR 1025 1293 -358 2134 122 7 0 chr6 19608910 19609213 -169670341 + AluSp SINE Alu 1 305 -8 2728 134 140 110 chr6 19609213 19609530 -169670024 + MSTB-int LTR MaLR 1293 1646 -5 2179 150 85 13 chr6 19609535 19609938 -169669616 + MSTB LTR MaLR 1 364 0 23 0 0 0 chr6 19610375 19610398 -169669156 + AT_rich Low_complexity Low_complexity 1 23 0 282 132 0 0 chr6 19611467 19611520 -169668034 + (TCC)n Simple_repeat Simple_repeat 2 54 0 334 266 100 123 chr6 19611573 19611994 -169667560 + L1M2 LINE L1 594 1004 -5845 28 29 0 0 chr6 19612220 19612255 -169667299 + GC_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr6 19612514 19612545 -169667009 + GC_rich Low_complexity Low_complexity 1 31 0 182 326 39 23 chr6 19613097 19613226 -169666328 + L2 LINE L2 2433 2563 -751 4410 167 140 87 chr6 19613244 19614118 -169665436 - MER52A LTR ERV1 -456 1299 251 699 97 0 0 chr6 19614118 19614211 -169665343 - AluSg/x SINE Alu -4 308 216 4410 167 140 87 chr6 19614211 19614477 -169665077 - MER52A LTR ERV1 -1504 251 1 2358 235 86 46 chr6 19614692 19615560 -169663994 - L2 LINE L2 -816 2498 1596 1053 266 96 29 chr6 19615579 19615996 -169663558 - LTR16A LTR ERVL -5 445 1 1854 290 37 24 chr6 19615998 19616619 -169662935 - L2 LINE L2 -1732 1582 954 683 230 146 11 chr6 19616628 19616806 -169662748 + L2 LINE L2 3112 3313 0 351 333 35 0 chr6 19617416 19617530 -169662024 + L2 LINE L2 3191 3308 -5 2347 103 0 0 chr6 19617598 19617900 -169661654 + AluSp SINE Alu 1 302 -11 2259 107 7 3 chr6 19618650 19618959 -169660595 - AluSx SINE Alu -2 310 1 816 151 123 0 chr6 19619209 19619355 -169660199 + MER20 DNA MER1_type 1 164 -55 505 48 0 0 chr6 19619357 19619420 -169660134 - FLAM_A SINE Alu -8 134 72 1040 83 0 0 chr6 19619359 19619491 -169660063 - AluJo/FLAM SINE Alu -169 133 2 2149 161 59 11 chr6 19619962 19620334 -169659220 + MLT2B1 LTR ERVL 1 390 -130 223 274 0 0 chr6 19620334 19620396 -169659158 + A-rich Low_complexity Low_complexity 1 62 0 680 129 0 0 chr6 19620785 19620886 -169658668 - HY3 scRNA scRNA 0 101 1 2129 114 44 0 chr6 19620966 19621263 -169658291 + AluSx SINE Alu 1 310 -2 1830 171 3 0 chr6 19621642 19621928 -169657626 - AluJb SINE Alu -25 287 1 1569 154 8 19 chr6 19622119 19622386 -169657168 - AluJo SINE Alu -12 300 37 40 0 0 0 chr6 19622434 19622474 -169657080 + AT_rich Low_complexity Low_complexity 1 40 0 2185 143 24 8 chr6 19622474 19622851 -169656703 - L1PB3 LINE L1 -7 6147 5765 193 286 48 12 chr6 19622872 19622956 -169656598 + L2 LINE L2 2791 2877 -437 188 298 18 0 chr6 19623205 19623262 -169656292 + L2 LINE L2 3202 3259 -54 1980 146 10 0 chr6 19623330 19623624 -169655930 + AluJb SINE Alu 1 297 -15 38 85 0 0 chr6 19624105 19624199 -169655355 + AT_rich Low_complexity Low_complexity 1 94 0 183 184 0 0 chr6 19625844 19625882 -169653672 + (TG)n Simple_repeat Simple_repeat 2 39 0 2350 86 0 10 chr6 19626117 19626421 -169653133 - AluSx SINE Alu -6 306 6 250 303 0 26 chr6 19628152 19628228 -169651326 - MIR3 SINE MIR -5 203 130 667 161 17 0 chr6 19628421 19628539 -169651015 + FLAM_C SINE Alu 2 121 -22 32 0 0 0 chr6 19628539 19628571 -169650983 + AT_rich Low_complexity Low_complexity 1 32 0 1377 150 0 13 chr6 19628874 19629101 -169650453 - AluJb SINE Alu 0 312 89 592 172 0 0 chr6 19629143 19629236 -169650318 - AluJb SINE Alu -218 94 2 537 158 8 16 chr6 19629296 19629423 -169650131 + CT-rich Low_complexity Low_complexity 1 126 0 989 182 0 11 chr6 19629435 19629611 -169649943 - FRAM SINE Alu -2 174 1 209 256 141 0 chr6 19629826 19629904 -169649650 - MIR SINE MIR -92 170 82 2193 105 20 3 chr6 19629991 19630286 -169649268 + AluSc SINE Alu 1 300 -9 297 227 102 11 chr6 19630328 19630416 -169649138 + L2 LINE L2 3210 3305 -8 392 279 122 27 chr6 19630587 19630734 -169648820 + L2 LINE L2 3111 3271 -1 2125 130 3 0 chr6 19630876 19631168 -169648386 - AluSx SINE Alu -13 299 7 267 224 0 40 chr6 19631222 19631298 -169648256 + MER20B DNA MER1_type 540 612 -171 598 208 66 20 chr6 19631304 19631501 -169648053 + MER20B DNA MER1_type 578 783 0 315 0 0 0 chr6 19631584 19631619 -169647935 + (TA)n Simple_repeat Simple_repeat 2 36 0 2117 99 27 7 chr6 19631619 19631913 -169647641 - AluSq SINE Alu -1 312 13 751 151 0 24 chr6 19632374 19632490 -169647064 + FLAM_C SINE Alu 2 116 -186 402 21 0 0 chr6 19632490 19632537 -169647017 + (CA)n Simple_repeat Simple_repeat 1 47 0 2234 118 3 0 chr6 19632627 19632923 -169646631 + AluSg SINE Alu 1 297 -13 25 51 0 0 chr6 19633017 19633056 -169646498 + AT_rich Low_complexity Low_complexity 1 39 0 1561 156 0 101 chr6 19633064 19633209 -169646345 + AluJb SINE Alu 1 159 -143 1763 136 0 54 chr6 19633209 19633488 -169646066 + AluSx SINE Alu 4 267 -45 1561 156 0 101 chr6 19633488 19633511 -169646043 + AluJb SINE Alu 159 183 -119 236 30 30 0 chr6 19633511 19633544 -169646010 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1561 156 0 101 chr6 19633544 19633700 -169645854 + AluJb SINE Alu 183 293 -9 313 288 33 49 chr6 19633759 19634002 -169645552 - L1ME4a LINE L1 -44 6077 5839 206 278 0 0 chr6 19634116 19634170 -169645384 + (TG)n Simple_repeat Simple_repeat 1 54 0 303 93 0 0 chr6 19634170 19634213 -169645341 + (TA)n Simple_repeat Simple_repeat 2 44 0 21 57 0 0 chr6 19634348 19634383 -169645171 + AT_rich Low_complexity Low_complexity 1 35 0 1567 78 11 117 chr6 19634454 19634735 -169644819 - L1MA5A LINE L1 -10 6287 6037 457 167 0 0 chr6 19634739 19634811 -169644743 + AluS SINE Alu 225 296 -16 262 327 85 28 chr6 19635266 19635584 -169643970 - L2 LINE L2 -1190 2124 1789 2637 43 0 3 chr6 19635724 19636026 -169643528 + AluY SINE Alu 1 301 -10 2008 145 0 0 chr6 19636093 19636403 -169643151 + AluJb SINE Alu 1 310 0 224 349 76 0 chr6 19636541 19636673 -169642881 + L2 LINE L2 1562 1703 -1611 2118 107 21 0 chr6 19636683 19636973 -169642581 + AluSg SINE Alu 1 296 -14 188 333 25 43 chr6 19636975 19637137 -169642417 - L2 LINE L2 -705 2609 2451 194 79 0 53 chr6 19637426 19637464 -169642090 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 2315 64 3 7 chr6 19638249 19638559 -169640995 - AluSg1 SINE Alu 0 309 1 418 155 0 0 chr6 19638960 19639031 -169640523 + AluJ/FLAM SINE Alu 1 71 -241 469 179 0 0 chr6 19639034 19639112 -169640442 - AluJ/FLAM SINE Alu -233 79 2 235 85 0 85 chr6 19639113 19639160 -169640394 - MLT2B2 LTR ERVL -372 143 101 2252 108 14 0 chr6 19639169 19639464 -169640090 - AluSx SINE Alu -13 299 1 683 135 45 0 chr6 19639464 19639575 -169639979 - MLT2B2 LTR ERVL -399 116 1 2294 109 6 6 chr6 19639794 19640106 -169639448 - AluSq SINE Alu -1 312 1 240 35 0 0 chr6 19640106 19640135 -169639419 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1638 162 52 4 chr6 19640135 19640407 -169639147 - AluJo SINE Alu -27 285 1 31 0 0 0 chr6 19640418 19640449 -169639105 + AT_rich Low_complexity Low_complexity 1 31 0 1878 172 0 0 chr6 19640449 19640740 -169638814 - AluJb SINE Alu -21 291 1 2284 86 16 0 chr6 19641500 19641678 -169637876 - AluY SINE Alu -2 309 122 210 37 0 0 chr6 19641678 19641705 -169637849 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2284 86 16 0 chr6 19641705 19641830 -169637724 - AluY SINE Alu -189 122 1 521 229 145 50 chr6 19641865 19642126 -169637428 + MLT1E LTR MaLR 2 391 -263 255 248 60 34 chr6 19642251 19642368 -169637186 - L1MEd LINE L1 -5016 1103 984 302 295 73 109 chr6 19642440 19642769 -169636785 - MLT1I LTR MaLR -80 329 13 1876 132 33 0 chr6 19643006 19643304 -169636250 - AluSq SINE Alu 0 307 1 1596 168 0 83 chr6 19643310 19643637 -169635917 - AluJb SINE Alu -8 304 5 243 190 63 25 chr6 19644033 19644112 -169635442 - L1MC4 LINE L1 -1337 6705 6624 744 168 0 8 chr6 19644129 19644254 -169635300 - FLAM_C SINE Alu -9 124 1 2470 74 0 0 chr6 19644451 19644749 -169634805 + AluSx SINE Alu 1 298 -14 1846 143 17 34 chr6 19644761 19645055 -169634499 + AluSx SINE Alu 1 289 -23 284 264 18 106 chr6 19645156 19645278 -169634276 - L1M4 LINE L1 -1501 4645 4559 1474 173 60 0 chr6 19645278 19645562 -169633992 + AluJb SINE Alu 22 320 0 284 264 18 106 chr6 19645562 19645722 -169633832 - L1M4 LINE L1 -1587 4559 4387 2398 104 0 0 chr6 19646066 19646373 -169633181 + AluSx SINE Alu 1 307 -5 2294 81 0 7 chr6 19646845 19647154 -169632400 - AluY SINE Alu 0 307 1 2265 91 11 0 chr6 19647721 19648007 -169631547 - AluSp SINE Alu -24 289 1 1409 185 56 4 chr6 19648417 19648687 -169630867 - AluJo SINE Alu -28 284 1 2253 110 0 0 chr6 19649339 19649629 -169629925 - AluSg SINE Alu -20 290 1 2280 92 7 3 chr6 19649629 19649923 -169629631 - AluSx SINE Alu -17 295 1 341 221 164 29 chr6 19650034 19650138 -169629416 - MIR3 SINE MIR -26 182 65 627 125 19 19 chr6 19650323 19650427 -169629127 - AluJo SINE Alu -10 302 199 886 163 7 7 chr6 19650427 19650574 -169628980 - AluJo SINE Alu -165 147 1 677 122 0 0 chr6 19650687 19650794 -169628760 - L1MA8 LINE L1 -3 6288 6182 410 263 51 0 chr6 19650834 19650952 -169628602 + MLT1I LTR MaLR 258 381 -28 305 305 156 26 chr6 19651255 19651409 -169628145 + MIR3 SINE MIR 32 205 -3 2172 107 7 3 chr6 19651629 19651918 -169627636 + AluSc SINE Alu 3 292 -17 2004 155 0 3 chr6 19652361 19652657 -169626897 - AluJb SINE Alu -17 295 1 2478 68 0 0 chr6 19653266 19653562 -169625992 - AluY SINE Alu -15 296 1 1987 113 41 17 chr6 19653629 19653922 -169625632 - AluSq SINE Alu -4 309 10 1803 156 0 43 chr6 19653998 19654300 -169625254 - AluJo SINE Alu -23 289 1 1659 129 0 0 chr6 19654527 19654775 -169624779 - L1PB1 LINE L1 -4 6147 5900 844 77 0 0 chr6 19654775 19654879 -169624675 - U6 snRNA snRNA -2 105 2 2277 110 3 3 chr6 19655524 19655833 -169623721 - AluSc SINE Alu 0 309 1 756 176 11 6 chr6 19656525 19656701 -169622853 + CT-rich Low_complexity Low_complexity 4 180 0 264 149 0 0 chr6 19656724 19656771 -169622783 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 444 239 42 21 chr6 19656794 19656936 -169622618 - AluJb SINE Alu -8 304 160 817 115 0 68 chr6 19657079 19657271 -169622283 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1627 193 24 10 chr6 19657298 19657594 -169621960 - AluJb SINE Alu -10 302 3 2412 109 35 11 chr6 19657707 19658083 -169621471 + L1MA5 LINE L1 5659 6043 -257 845 163 0 7 chr6 19658086 19658221 -169621333 + AluJb SINE Alu 1 134 -178 3448 108 10 29 chr6 19658228 19658748 -169620806 - MER9 LTR ERVK 0 511 2 1035 75 38 113 chr6 19658759 19658867 -169620687 + L1MA5 LINE L1 6028 6114 -186 2147 147 0 3 chr6 19658867 19659180 -169620374 + AluSx SINE Alu 1 312 0 1035 75 38 113 chr6 19659180 19659283 -169620271 + L1MA5 LINE L1 6114 6223 -77 23 68 0 0 chr6 19659283 19659327 -169620227 + AT_rich Low_complexity Low_complexity 1 44 0 270 153 68 0 chr6 19659349 19659408 -169620146 + L1MA5A LINE L1 6235 6297 0 2577 74 0 0 chr6 19659758 19660068 -169619486 + AluY SINE Alu 1 310 -1 266 365 22 17 chr6 19660128 19660309 -169619245 + MIR3 SINE MIR 24 205 -3 327 325 34 39 chr6 19660739 19660945 -169618609 + L2 LINE L2 2682 2886 -428 2294 110 0 0 chr6 19661150 19661441 -169618113 - AluSg SINE Alu -17 293 3 2325 110 0 0 chr6 19661641 19661942 -169617612 - AluSg SINE Alu -3 307 7 2222 91 3 17 chr6 19661952 19662248 -169617306 - AluSq SINE Alu -20 293 2 2058 122 37 0 chr6 19663248 19663542 -169616012 - AluSx SINE Alu -7 305 1 32 26 0 0 chr6 19663573 19663612 -169615942 + AT_rich Low_complexity Low_complexity 1 39 0 422 261 58 27 chr6 19663791 19663995 -169615559 + LTR16C LTR ERVL 1 277 -214 329 245 170 0 chr6 19664033 19664139 -169615415 + LTR16C LTR ERVL 337 460 -31 1259 115 5 35 chr6 19664216 19664416 -169615138 - L1PB2 LINE L1 -1 6150 5957 2034 151 0 0 chr6 19664425 19664729 -169614825 - AluSx SINE Alu -8 304 1 2113 114 11 0 chr6 19664975 19665256 -169614298 + AluJo SINE Alu 10 293 -19 2128 108 21 3 chr6 19665256 19665542 -169614012 + AluSc SINE Alu 1 291 -18 2718 139 83 28 chr6 19665909 19666457 -169613097 - LTR24B LTR ERV1 -6 570 1 2345 71 3 20 chr6 19666560 19666877 -169612677 - AluY SINE Alu 0 311 1 225 274 179 0 chr6 19667036 19667142 -169612412 + MIR SINE MIR 132 256 -6 2138 138 0 0 chr6 19667143 19667447 -169612107 - AluSx SINE Alu -4 308 5 22 94 0 0 chr6 19667515 19667579 -169611975 + AT_rich Low_complexity Low_complexity 1 64 0 2319 87 0 16 chr6 19667659 19667971 -169611583 - AluSp SINE Alu -4 309 3 2343 86 3 0 chr6 19668118 19668410 -169611144 - AluSp SINE Alu -20 293 1 2081 162 0 0 chr6 19668475 19668778 -169610776 - AluSx SINE Alu -9 303 1 1588 238 123 23 chr6 19668878 19669445 -169610109 + MER114 LTR ERV 25 648 0 2504 51 10 3 chr6 19669815 19670111 -169609443 - AluY SINE Alu -13 298 1 2159 99 0 18 chr6 19670148 19670430 -169609124 - AluSg SINE Alu -31 279 3 1686 179 0 45 chr6 19670912 19671224 -169608330 - AluJo SINE Alu -14 298 1 2169 105 0 26 chr6 19671258 19671563 -169607991 + AluSx SINE Alu 14 310 -2 713 198 9 0 chr6 19671760 19671876 -169607678 - FLAM_C SINE Alu -25 118 2 420 285 44 25 chr6 19672998 19673156 -169606398 - MIR SINE MIR -18 244 84 1642 135 128 6 chr6 19673854 19673954 -169605600 - L1MB3 LINE L1 -1 6182 6096 1867 166 10 3 chr6 19673954 19674250 -169605304 - AluJo SINE Alu -14 298 1 1642 135 128 6 chr6 19674250 19674468 -169605086 - L1MB3 LINE L1 -87 6096 5825 2539 59 0 0 chr6 19674983 19675286 -169604268 - AluY SINE Alu -8 303 1 3659 183 43 3 chr6 19675294 19675766 -169603788 + MER54B LTR ERVL 1 509 -284 769 84 17 0 chr6 19675766 19675885 -169603669 + (GA)n Simple_repeat Simple_repeat 1 121 0 3659 183 43 3 chr6 19675885 19676078 -169603476 + MER54B LTR ERVL 509 693 -100 1297 170 4 18 chr6 19677427 19677656 -169601898 - AluJb SINE Alu -86 226 1 1330 115 161 14 chr6 19677678 19677896 -169601658 + AluSg1 SINE Alu 49 298 -11 217 250 73 0 chr6 19677927 19677995 -169601559 + L3 LINE CR1 1380 1452 -125 22 0 0 0 chr6 19678141 19678163 -169601391 + AT_rich Low_complexity Low_complexity 1 22 0 883 90 0 0 chr6 19679018 19679129 -169600425 + AluSp/q SINE Alu 186 296 -17 4346 126 47 11 chr6 19679467 19679593 -169599961 + L1PB3 LINE L1 5462 5582 -572 2581 59 0 0 chr6 19679593 19679896 -169599658 - AluY SINE Alu -8 303 1 4346 126 47 11 chr6 19679896 19680099 -169599455 + L1PB3 LINE L1 5582 5776 -378 396 0 0 0 chr6 19680099 19680143 -169599411 + (CA)n Simple_repeat Simple_repeat 2 45 0 4346 126 47 11 chr6 19680143 19680479 -169599075 + L1PB3 LINE L1 5776 6152 -2 190 224 271 12 chr6 19680520 19680605 -169598949 + MIR SINE MIR 55 161 -101 207 336 108 35 chr6 19680836 19681095 -169598459 + L2 LINE L2 2958 3235 -37 1845 151 7 30 chr6 19681534 19681838 -169597716 + AluJo SINE Alu 1 297 -15 349 250 61 15 chr6 19681937 19682069 -169597485 + MER97b DNA MER1_type? 916 1053 0 1717 163 10 23 chr6 19682688 19682989 -169596565 + AluJo SINE Alu 5 301 -11 296 277 125 9 chr6 19683626 19683738 -169595816 + MIR SINE MIR 50 174 -88 2320 102 0 16 chr6 19683742 19684057 -169595497 - AluSx SINE Alu -2 310 1 218 267 133 0 chr6 19684900 19684960 -169594594 + MIR3 SINE MIR 98 165 -43 1713 104 5 0 chr6 19685284 19685504 -169594050 + AluSx SINE Alu 1 221 -91 210 37 0 0 chr6 19685520 19685547 -169594007 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1192 172 18 35 chr6 19685578 19685805 -169593749 - AluJo SINE Alu -8 304 82 195 286 0 61 chr6 19686140 19686238 -169593316 - MIR SINE MIR -66 196 105 1032 230 96 5 chr6 19686238 19686532 -169593022 - MER57A LTR ERV1 0 403 117 182 342 13 0 chr6 19686532 19686608 -169592946 - MIR SINE MIR -128 134 58 2334 113 0 0 chr6 19686641 19686951 -169592603 - AluSx SINE Alu -2 310 1 285 254 159 16 chr6 19687162 19687288 -169592266 - L2 LINE L2 -1 3312 3169 23 0 0 0 chr6 19687960 19687983 -169591571 + AT_rich Low_complexity Low_complexity 1 23 0 2033 137 27 0 chr6 19688403 19688703 -169590851 + AluSx SINE Alu 1 308 -4 1871 171 30 18 chr6 19688705 19689039 -169590515 + MLT1A1 LTR MaLR 27 364 -1 209 275 0 88 chr6 19689910 19690001 -169589553 + MIR SINE MIR 166 248 -14 387 0 0 0 chr6 19690037 19690080 -169589474 + (TG)n Simple_repeat Simple_repeat 2 44 0 573 274 20 68 chr6 19690138 19690390 -169589164 + MIR SINE MIR 6 245 -17 445 234 40 16 chr6 19690663 19690787 -169588767 + MER5A DNA MER1_type 21 147 -42 389 200 12 147 chr6 19690815 19690985 -169588569 - MER5B DNA MER1_type -30 148 2 250 299 60 19 chr6 19691010 19691186 -169588368 + MER5A DNA MER1_type 38 187 -2 2113 120 3 3 chr6 19691303 19691594 -169587960 + AluSx SINE Alu 1 291 -21 496 173 0 0 chr6 19692046 19692127 -169587427 + MER5A DNA MER1_type 10 90 -99 1542 174 44 20 chr6 19692614 19692912 -169586642 + AluJo SINE Alu 1 305 -7 686 178 31 16 chr6 19692937 19693066 -169586488 - L1MC1 LINE L1 -1 6332 6202 312 194 0 0 chr6 19693170 19693232 -169586322 - LTR5 LTR ERVK -153 816 755 1403 164 35 28 chr6 19693232 19693519 -169586035 - L1MC3 LINE L1 -202 7583 7295 729 142 0 0 chr6 19693521 19693627 -169585927 - MLT1B LTR MaLR -284 106 1 1568 149 90 28 chr6 19693699 19693988 -169585566 - AluJo SINE Alu -5 307 1 2216 116 0 0 chr6 19694794 19695097 -169584457 - AluSx SINE Alu -9 303 1 586 263 173 63 chr6 19695112 19695447 -169584107 + MLT1J LTR MaLR 1 372 -139 1695 184 3 20 chr6 19695508 19695813 -169583741 - AluJo SINE Alu -12 300 1 2469 66 3 0 chr6 19695861 19696162 -169583392 - AluY SINE Alu -9 302 1 541 219 206 20 chr6 19697767 19697913 -169581641 - MER21B LTR ERV1 -690 173 1 664 333 154 49 chr6 19698128 19698617 -169580937 + L2 LINE L2 1563 2000 -1313 1469 168 78 4 chr6 19698617 19698885 -169580669 + AluJo SINE Alu 1 288 -24 664 333 154 49 chr6 19698885 19699716 -169579838 + L2 LINE L2 2000 3030 -283 243 180 0 20 chr6 19699726 19699776 -169579778 + MER5B DNA MER1_type 1 49 -129 230 195 24 10 chr6 19699826 19699917 -169579637 - MER5A DNA MER1_type -19 170 1 392 269 0 19 chr6 19700065 19700169 -169579385 + L2 LINE L2 3212 3313 0 208 231 19 0 chr6 19700511 19700563 -169578991 + (TG)n Simple_repeat Simple_repeat 2 54 0 1424 199 14 11 chr6 19700704 19700990 -169578564 - AluJo SINE Alu -6 306 20 37549 60 3 2 chr6 19702081 19707632 -169571922 - L1PA5 LINE L1 0 6154 597 197 358 12 25 chr6 19707692 19707773 -169571781 - MIR SINE MIR -163 99 20 1007 153 0 69 chr6 19708161 19708350 -169571204 - AluJ SINE Alu -15 297 122 299 200 0 12 chr6 19708351 19708431 -169571123 + CT-rich Low_complexity Low_complexity 1 79 0 840 150 39 0 chr6 19708431 19708558 -169570996 - AluJ SINE Alu -169 133 2 1931 151 3 19 chr6 19709966 19710277 -169569277 - AluJb SINE Alu 0 312 7 1533 103 84 5 chr6 19710958 19711171 -169568383 + MER30 DNA MER1_type 1 230 0 500 220 56 13 chr6 19711201 19711359 -169568195 + MIR SINE MIR 50 215 -47 27 0 0 0 chr6 19711453 19711480 -169568074 + AT_rich Low_complexity Low_complexity 1 27 0 2515 124 28 3 chr6 19713773 19714128 -169565426 + THE1B LTR MaLR 1 364 0 308 215 161 113 chr6 19714458 19714732 -169564822 - L1M2a LINE L1 -6066 1102 816 2339 104 13 0 chr6 19715354 19715663 -169563891 - AluSp SINE Alu 0 313 1 189 171 0 0 chr6 19716982 19717017 -169562537 + (CTG)n Simple_repeat Simple_repeat 3 37 0 21 0 0 0 chr6 19717018 19717039 -169562515 + AT_rich Low_complexity Low_complexity 1 21 0 604 114 11 23 chr6 19717906 19717994 -169561560 - FLAM_A SINE Alu -20 122 36 34 0 0 0 chr6 19718001 19718035 -169561519 + AT_rich Low_complexity Low_complexity 1 34 0 285 286 217 43 chr6 19718079 19718383 -169561171 + L2 LINE L2 2915 3271 -1 860 170 0 15 chr6 19718877 19719012 -169560542 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr6 19719280 19719301 -169560253 + AT_rich Low_complexity Low_complexity 1 21 0 255 238 0 88 chr6 19719309 19719389 -169560165 + MIR SINE MIR 175 247 -15 1833 93 0 4 chr6 19719676 19719912 -169559642 + AluSq SINE Alu 1 235 -78 323 303 68 56 chr6 19720434 19720863 -169558691 + L1M4 LINE L1 2731 3164 -2982 1614 59 5 55 chr6 19720999 19721218 -169558336 + AluY SINE Alu 86 293 -18 2368 88 0 0 chr6 19721218 19721514 -169558040 + AluY SINE Alu 1 296 -15 739 218 0 0 chr6 19722588 19722721 -169556833 - FLAM_C SINE Alu 0 133 1 2075 108 0 0 chr6 19722726 19723004 -169556550 - AluSg1 SINE Alu 0 309 32 329 214 70 5 chr6 19723752 19723849 -169555705 - MER5A DNA MER1_type -15 163 53 1663 160 3 33 chr6 19723861 19724161 -169555393 + AluJb SINE Alu 1 291 -21 1212 113 15 10 chr6 19724278 19724473 -169555081 - Tigger2a DNA MER2_type -238 196 1 1290 78 48 0 chr6 19724493 19724659 -169554895 - AluSg/x SINE Alu -5 307 134 359 232 80 8 chr6 19724670 19724795 -169554759 - MER114 LTR ERV -514 134 1 1570 175 0 77 chr6 19724861 19725187 -169554367 + AluJo SINE Alu 1 301 -11 224 154 19 0 chr6 19725304 19725356 -169554198 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 252 65 0 0 chr6 19725360 19725406 -169554148 + LTR66 LTR ERVL 394 439 -171 1987 135 0 0 chr6 19725412 19725700 -169553854 - AluSx SINE Alu -20 292 5 24 53 0 0 chr6 19725709 19725747 -169553807 + AT_rich Low_complexity Low_complexity 1 38 0 1206 174 178 12 chr6 19725747 19725994 -169553560 + AluJo SINE Alu 1 288 -24 269 191 29 15 chr6 19726113 19726181 -169553373 - MER94 DNA DNA -64 70 2 289 302 53 45 chr6 19726293 19726667 -169552887 + L1M4 LINE L1 3778 4154 -1992 365 313 93 65 chr6 19727047 19727643 -169551911 + L1M4 LINE L1 4741 5358 -788 432 0 0 0 chr6 19727643 19727691 -169551863 + (TG)n Simple_repeat Simple_repeat 2 49 0 365 313 93 65 chr6 19727691 19727730 -169551824 + L1M4 LINE L1 5358 5394 -752 2388 98 3 0 chr6 19729596 19729901 -169549653 - AluSg SINE Alu -4 306 1 2131 125 7 7 chr6 19730648 19730945 -169548609 - AluSx SINE Alu -15 297 1 506 121 0 0 chr6 19730945 19731011 -169548543 - AluS SINE Alu -227 86 21 21 0 0 0 chr6 19731128 19731149 -169548405 + AT_rich Low_complexity Low_complexity 1 21 0 1600 165 27 27 chr6 19731152 19731449 -169548105 - AluJo SINE Alu -15 297 1 290 258 0 0 chr6 19731633 19731695 -169547859 - MER91 DNA MER1_type 0 140 79 429 312 62 11 chr6 19731754 19731943 -169547611 - MIR SINE MIR -32 230 35 189 274 228 35 chr6 19731967 19732164 -169547390 + L2 LINE L2 2176 2410 -904 2150 115 123 52 chr6 19732210 19732610 -169546944 + MSTA LTR MaLR 1 428 0 2310 148 63 22 chr6 19732868 19733279 -169546275 + MSTA LTR MaLR 1 428 0 259 333 116 22 chr6 19733429 19733567 -169545987 + L2 LINE L2 3118 3268 -4 239 319 76 35 chr6 19734090 19734161 -169545393 + MIR3 SINE MIR 45 112 -96 2451 91 0 3 chr6 19734161 19734469 -169545085 - AluSq SINE Alu -6 307 1 239 319 76 35 chr6 19734469 19734541 -169545013 + MIR3 SINE MIR 112 194 -14 204 324 95 0 chr6 19738297 19738371 -169541183 - L2 LINE L2 -22 3250 3170 21 57 0 0 chr6 19738544 19738579 -169540975 + AT_rich Low_complexity Low_complexity 1 35 0 2334 65 0 3 chr6 19739884 19740175 -169539379 + AluY SINE Alu 1 290 -21 2138 70 13 47 chr6 19740215 19740516 -169539038 + AluY SINE Alu 1 291 -20 1978 65 4 4 chr6 19741190 19741435 -169538119 + AluY SINE Alu 54 298 -13 2140 116 0 29 chr6 19742616 19742926 -169536628 + AluSg SINE Alu 1 301 -9 332 290 40 24 chr6 19746103 19746227 -169533327 + MIR SINE MIR 24 149 -113 283 114 0 0 chr6 19746228 19746272 -169533282 - L1MB4 LINE L1 -124 6056 6013 733 169 0 0 chr6 19746296 19746420 -169533134 + FRAM SINE Alu 36 159 -17 2303 126 59 0 chr6 19746426 19746661 -169532893 - L1MB2 LINE L1 -153 6018 5748 1971 115 15 78 chr6 19746661 19746992 -169532562 - AluSx SINE Alu -2 310 1 2303 126 59 0 chr6 19746992 19747160 -169532394 - L1MB2 LINE L1 -423 5748 5591 1136 153 121 7 chr6 19747259 19747541 -169532013 - L1MA9 LINE L1 -9 6303 5990 2461 60 0 7 chr6 19748288 19748588 -169530966 + AluY SINE Alu 1 298 -13 453 225 14 67 chr6 19748967 19749191 -169530363 - L2 LINE L2 -1 3312 3017 413 235 20 0 chr6 19750249 19750351 -169529203 - U13 snRNA snRNA 0 104 1 376 240 42 10 chr6 19750487 19750583 -169528971 + MIR SINE MIR 55 153 -55 354 211 60 96 chr6 19750782 19750948 -169528606 - MER103 DNA DNA -1 165 6 2175 144 87 41 chr6 19751971 19752407 -169527147 - MSTB2 LTR MaLR -1 456 1 462 300 18 59 chr6 19752573 19752743 -169526811 + MIR SINE MIR 2 164 -98 2191 101 0 10 chr6 19753440 19753773 -169525781 - AluSg SINE Alu 0 310 1 247 282 51 0 chr6 19754210 19754288 -169525266 - L3 LINE CR1 -1 1576 1495 1087 277 108 2 chr6 19754348 19754756 -169524798 - L2 LINE L2 -1 3312 2856 396 0 0 0 chr6 19754756 19754800 -169524754 + (TG)n Simple_repeat Simple_repeat 2 45 0 1087 277 108 2 chr6 19754800 19754817 -169524737 - L2 LINE L2 -457 2856 2842 1530 145 167 38 chr6 19754817 19755099 -169524455 - MLT2B1 LTR ERVL -94 426 83 1775 122 134 15 chr6 19755099 19755434 -169524120 - THE1C LTR MaLR 0 375 1 1530 145 167 38 chr6 19755434 19755523 -169524031 - MLT2B1 LTR ERVL -437 83 7 507 209 18 18 chr6 19755527 19755637 -169523917 - L2 LINE L2 -633 2681 2572 239 304 43 9 chr6 19755666 19755781 -169523773 + MIR SINE MIR 120 238 -24 261 369 45 25 chr6 19755805 19756003 -169523551 - L3 LINE CR1 -99 1478 1277 267 300 146 0 chr6 19756146 19756256 -169523298 + MIR3 SINE MIR 34 159 -49 2203 132 3 0 chr6 19756273 19756583 -169522971 - AluSq SINE Alu -2 311 1 183 268 0 0 chr6 19756622 19756663 -169522891 - L3 LINE CR1 -351 1226 1186 334 325 16 47 chr6 19756900 19757091 -169522463 + LTR16A LTR ERVL 181 365 -85 1985 136 51 0 chr6 19757407 19757702 -169521852 + AluSx SINE Alu 1 310 -2 2124 126 3 3 chr6 19758416 19758725 -169520829 - AluSq SINE Alu -4 309 1 199 293 89 70 chr6 19759267 19759526 -169520028 - L2 LINE L2 -198 3074 2811 2373 104 0 0 chr6 19759828 19760135 -169519419 - AluSc SINE Alu 0 309 3 324 0 0 0 chr6 19760317 19760353 -169519201 + (TA)n Simple_repeat Simple_repeat 2 37 0 2192 112 34 0 chr6 19760353 19760648 -169518906 - AluSx SINE Alu -7 305 1 471 282 90 29 chr6 19760804 19761193 -169518361 - L1ME LINE L1 -302 5819 5401 193 145 118 158 chr6 19761883 19761959 -169517595 - MIR SINE MIR -103 159 87 21 82 0 0 chr6 19763460 19763509 -169516045 + AT_rich Low_complexity Low_complexity 1 49 0 1137 179 153 58 chr6 19763757 19764070 -169515484 + MER2 DNA MER2_type 2 344 0 961 200 88 117 chr6 19764093 19764468 -169515086 - MLT1A1 LTR MaLR 0 365 2 263 224 35 0 chr6 19765697 19765755 -169513799 - MER5B DNA MER1_type -1 177 118 4121 176 45 27 chr6 19765760 19767594 -169511960 + L1MB8 LINE L1 4282 6161 -17 28 48 0 0 chr6 19767632 19767674 -169511880 + AT_rich Low_complexity Low_complexity 1 42 0 555 290 0 0 chr6 19767684 19767815 -169511739 - MER5B DNA MER1_type -47 131 1 389 303 133 6 chr6 19767825 19767990 -169511564 + MER5A DNA MER1_type 4 189 0 572 300 173 35 chr6 19768271 19768845 -169510709 - L2 LINE L2 -1123 2191 1539 1449 135 0 41 chr6 19768948 19769192 -169510362 - MER46A DNA MER2_type 0 236 3 277 324 48 69 chr6 19769231 19769376 -169510178 - L2 LINE L2 -24 3248 3107 1836 169 10 0 chr6 19769827 19770117 -169509437 + AluSx SINE Alu 1 293 -19 387 0 0 0 chr6 19770128 19770171 -169509383 + (CA)n Simple_repeat Simple_repeat 2 44 0 1515 157 56 21 chr6 19771534 19771821 -169507733 + AluJo SINE Alu 1 297 -15 269 239 84 0 chr6 19772054 19772125 -169507429 - MIR SINE MIR -98 164 88 240 222 0 19 chr6 19772491 19772545 -169507009 - L3 LINE CR1 -1 1576 1524 267 79 0 0 chr6 19773891 19773929 -169505625 + (TG)n Simple_repeat Simple_repeat 2 39 0 269 261 99 70 chr6 19773931 19774073 -169505481 - MIR SINE MIR -89 173 28 345 239 65 19 chr6 19774577 19774732 -169504822 - L1ME4a LINE L1 -249 5872 5711 291 218 0 77 chr6 19775472 19775642 -169503912 + T-rich Low_complexity Low_complexity 4 160 0 2095 109 89 9 chr6 19776821 19777168 -169502386 + THE1C LTR MaLR 1 375 0 189 195 98 0 chr6 19777511 19777552 -169502002 - L2 LINE L2 -5 3267 3223 * 518 259 74 65 chr6 19777528 19777744 -169501810 - MIR SINE MIR -20 242 25 1786 171 0 27 chr6 19777764 19778062 -169501492 + AluJo SINE Alu 1 290 -22 213 314 39 0 chr6 19778132 19778234 -169501320 + (TATATG)n Simple_repeat Simple_repeat 6 111 0 223 286 81 87 chr6 19778686 19778847 -169500707 - L2 LINE L2 -36 3236 3077 866 213 45 15 chr6 19778967 19779169 -169500385 - MER3 DNA MER1_type 0 209 2 1456 178 86 27 chr6 19779315 19779338 -169500216 - AluJo SINE Alu -3 309 289 195 42 0 0 chr6 19779338 19779362 -169500192 + (TC)n Simple_repeat Simple_repeat 2 25 0 1456 178 86 27 chr6 19779362 19779630 -169499924 - AluJo SINE Alu -23 289 1 1889 122 58 3 chr6 19779815 19780110 -169499444 + AluY SINE Alu 1 311 0 1685 169 68 12 chr6 19780811 19781136 -169498418 - MER2 DNA MER2_type 0 344 2 2428 85 0 0 chr6 19783469 19783775 -169495779 - AluY SINE Alu -5 306 1 2353 214 66 49 chr6 19784192 19784533 -169495021 + L1MC4a LINE L1 6928 7262 -733 3025 23 0 0 chr6 19784533 19784882 -169494672 + L1PA4 LINE L1 5799 6147 -8 2353 214 66 49 chr6 19784882 19785426 -169494128 + L1MC4a LINE L1 7262 7951 -44 187 324 67 29 chr6 19785613 19785718 -169493836 - MIR SINE MIR -70 192 84 249 295 93 23 chr6 19785880 19786009 -169493545 + L2 LINE L2 3173 3310 -3 1689 188 3 14 chr6 19786010 19786302 -169493252 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr6 19786574 19786602 -169492952 + AT_rich Low_complexity Low_complexity 1 28 0 745 219 30 12 chr6 19790535 19790704 -169488850 + MIR SINE MIR 41 212 -50 312 236 42 14 chr6 19791268 19791340 -169488214 - MIR SINE MIR -108 154 81 2414 175 68 11 chr6 19791391 19791963 -169487591 - L1MB4 LINE L1 -1 6179 5575 24 0 0 0 chr6 19791970 19791994 -169487560 + AT_rich Low_complexity Low_complexity 1 24 0 201 304 36 0 chr6 19792032 19792088 -169487466 - MIR3 SINE MIR -39 169 112 2170 120 7 0 chr6 19792107 19792415 -169487139 - AluSx SINE Alu -2 310 1 266 290 113 21 chr6 19792840 19793026 -169486528 - L3 LINE CR1 -741 836 634 570 232 49 0 chr6 19795519 19795661 -169483893 + MER20 DNA MER1_type 1 149 -70 407 35 18 0 chr6 19795695 19795752 -169483802 + (TG)n Simple_repeat Simple_repeat 2 59 0 281 227 45 0 chr6 19795769 19795835 -169483719 + MER20 DNA MER1_type 150 218 -1 1604 264 283 21 chr6 19795848 19796996 -169482558 - L2 LINE L2 -63 3250 2404 216 0 0 0 chr6 19796996 19797020 -169482534 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1604 264 283 21 chr6 19797020 19797348 -169482206 - L2 LINE L2 -909 2404 1325 244 203 0 51 chr6 19797425 19797484 -169482070 - L2 LINE L2 0 3313 3258 349 225 181 19 chr6 19797496 19797543 -169482011 + MER112 DNA MER1_type 23 61 -199 261 0 0 0 chr6 19797543 19797572 -169481982 + (CA)n Simple_repeat Simple_repeat 1 29 0 349 225 181 19 chr6 19797572 19797684 -169481870 + MER112 DNA MER1_type 61 208 -52 188 313 0 0 chr6 19797807 19797855 -169481699 - L2 LINE L2 -27 3245 3198 728 140 86 50 chr6 19798494 19798716 -169480838 - L1MA8 LINE L1 -2 6289 6060 666 198 25 64 chr6 19799131 19799159 -169480395 + MER63A DNA MER1_type 50 78 -1610 2158 102 3 7 chr6 19799159 19799453 -169480101 - AluSx SINE Alu -19 293 1 666 198 25 64 chr6 19799453 19799581 -169479973 + MER63A DNA MER1_type 78 200 -10 182 254 189 49 chr6 19800048 19800170 -169479384 + L2 LINE L2 3134 3272 0 1670 188 0 7 chr6 19801638 19801941 -169477613 - AluJb SINE Alu -11 301 1 2382 93 3 0 chr6 19801992 19802292 -169477262 - AluSx SINE Alu -11 301 1 310 285 65 49 chr6 19802306 19802429 -169477125 - L1MC4a LINE L1 -1922 5886 5762 187 283 0 0 chr6 19802577 19802623 -169476931 - L3 LINE CR1 -2 1575 1530 638 273 95 65 chr6 19802725 19803124 -169476430 - MLT1L LTR MaLR -4 611 201 203 267 30 79 chr6 19803262 19803363 -169476191 - L3 LINE CR1 -196 1381 1286 2478 78 0 0 chr6 19804767 19805076 -169474478 - AluY SINE Alu -2 309 1 2034 117 7 7 chr6 19805633 19805923 -169473631 + AluSx SINE Alu 1 290 -22 2155 114 0 0 chr6 19806784 19807090 -169472464 - AluSx SINE Alu 0 308 3 286 303 34 42 chr6 19807463 19807566 -169471988 + MIR SINE MIR 50 153 -109 1299 159 26 9 chr6 19807566 19807798 -169471756 - MER46A DNA MER2_type 0 236 1 286 303 34 42 chr6 19807798 19807813 -169471741 + MIR SINE MIR 153 167 -95 2268 178 55 34 chr6 19808883 19809377 -169470177 - MLT1D LTR MaLR 0 505 2 227 200 18 0 chr6 19809440 19809495 -169470059 + CT-rich Low_complexity Low_complexity 2 57 0 326 329 175 31 chr6 19810864 19811418 -169468136 + L2 LINE L2 1603 2236 -1078 22 35 0 0 chr6 19811911 19811940 -169467614 + AT_rich Low_complexity Low_complexity 1 29 0 2509 110 22 0 chr6 19812574 19812930 -169466624 - THE1B LTR MaLR 0 364 1 25 51 0 0 chr6 19813026 19813065 -169466489 + AT_rich Low_complexity Low_complexity 1 39 0 1568 208 30 33 chr6 19813339 19813704 -169465850 - MLT1A2 LTR MaLR -10 364 1 183 42 0 0 chr6 19816250 19816274 -169463280 + (T)n Simple_repeat Simple_repeat 1 24 0 1851 168 3 0 chr6 19816496 19816794 -169462760 - AluJo SINE Alu -12 300 2 1996 83 3 119 chr6 19817907 19818243 -169461311 + AluSp SINE Alu 1 297 -6 189 211 211 0 chr6 19818415 19818472 -169461082 + MIR3 SINE MIR 133 201 -7 2089 123 7 7 chr6 19820625 19820926 -169458628 - AluSx SINE Alu -11 301 1 354 274 34 75 chr6 19821266 19821412 -169458142 - MIR SINE MIR -74 188 49 765 170 27 67 chr6 19821463 19821573 -169457981 - MLT1E3 LTR MaLR -43 581 468 2342 91 3 0 chr6 19821573 19821869 -169457685 + AluSc SINE Alu 1 297 -12 765 170 27 67 chr6 19821869 19822063 -169457491 - MLT1E3 LTR MaLR -156 468 208 280 283 98 0 chr6 19822728 19822820 -169456734 + MIR3 SINE MIR 93 193 -15 2476 71 0 3 chr6 19823570 19823878 -169455676 + AluY SINE Alu 5 311 0 22 80 0 0 chr6 19824148 19824198 -169455356 + AT_rich Low_complexity Low_complexity 1 50 0 848 199 6 0 chr6 19824229 19824385 -169455169 - FRAM SINE Alu -19 157 1 1932 144 7 16 chr6 19824389 19824694 -169454860 - AluJb SINE Alu -10 302 1 2294 115 0 6 chr6 19824742 19825054 -169454500 - AluSx SINE Alu -2 310 1 291 321 18 72 chr6 19825586 19825633 -169453921 - L2 LINE L2 -552 2762 2714 2012 141 0 7 chr6 19825633 19825932 -169453622 + AluJb SINE Alu 6 302 -10 291 321 18 72 chr6 19825932 19826105 -169453449 - L2 LINE L2 -600 2714 2554 495 0 0 0 chr6 19827255 19827310 -169452244 + (TA)n Simple_repeat Simple_repeat 2 56 0 421 301 97 5 chr6 19827461 19827696 -169451858 - L1 LINE L1 -2860 3286 3028 241 235 131 99 chr6 19828311 19828532 -169451022 - HAL1 LINE L1 -111 2396 2169 1454 158 18 94 chr6 19828826 19829095 -169450459 + L1MC1 LINE L1 6030 6271 -62 2277 138 40 11 chr6 19829095 19829449 -169450105 + THE1B LTR MaLR 1 364 0 1454 158 18 94 chr6 19829449 19829508 -169450046 + L1MC1 LINE L1 6271 6333 0 441 246 42 28 chr6 19829525 19829667 -169449887 + MIR SINE MIR 5 148 -114 197 289 0 0 chr6 19829680 19829725 -169449829 + L2 LINE L2 3217 3261 -11 2087 132 3 0 chr6 19829762 19830065 -169449489 - AluSx SINE Alu -8 304 1 1636 140 114 7 chr6 19830445 19830717 -169448837 - AluSg1 SINE Alu -8 301 1 189 0 0 0 chr6 19830805 19830826 -169448728 + (T)n Simple_repeat Simple_repeat 1 21 0 1085 286 208 33 chr6 19830911 19831899 -169447655 - HAL1 LINE L1 -604 1903 744 261 0 0 0 chr6 19832035 19832064 -169447490 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1823 118 20 104 chr6 19832621 19832968 -169446586 - AluYb8 SINE Alu 0 318 1 242 261 101 0 chr6 19833101 19833170 -169446384 - L1MC2 LINE L1 -57 6287 6212 1719 251 100 69 chr6 19833829 19834578 -169444976 - LTR41 LTR ERVL -1 772 1 427 276 17 9 chr6 19835820 19835936 -169443618 + L2 LINE L2 3197 3313 0 207 344 57 45 chr6 19837311 19837555 -169441999 - MIR SINE MIR -3 259 13 330 26 0 0 chr6 19837772 19837811 -169441743 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 1133 243 9 0 chr6 19838232 19838454 -169441100 - MER58A DNA MER1_type 0 224 1 217 269 0 39 chr6 19838476 19838528 -169441026 + L2 LINE L2 3246 3295 -18 606 297 24 19 chr6 19838837 19839049 -169440505 - MLT1K LTR MaLR 0 588 376 221 329 148 33 chr6 19839270 19839629 -169439925 - L2 LINE L2 -337 2977 2578 2121 101 0 37 chr6 19840930 19841259 -169438295 + AluSq SINE Alu 1 318 0 279 323 31 31 chr6 19841354 19841484 -169438070 - L2 LINE L2 -9 3263 3134 404 253 107 20 chr6 19842437 19842587 -169436967 - MIR SINE MIR -11 251 89 288 200 15 15 chr6 19842780 19842845 -169436709 + MER112 DNA MER1_type 5 69 -191 278 314 42 42 chr6 19843992 19844110 -169435444 - L2 LINE L2 -14 3258 3141 1409 159 131 68 chr6 19844472 19844824 -169434730 - MLT1A2 LTR MaLR 0 374 1 323 325 123 0 chr6 19845792 19845946 -169433608 - MIR3 SINE MIR -5 203 31 215 326 65 11 chr6 19846564 19846656 -169432898 + MIR SINE MIR 31 127 -81 1774 141 11 0 chr6 19846674 19846937 -169432617 - AluSg SINE Alu -44 266 1 181 247 35 82 chr6 19846940 19847025 -169432529 + MIR3 SINE MIR 119 199 -9 558 29 0 0 chr6 19847674 19847742 -169431812 + (CA)n Simple_repeat Simple_repeat 2 69 0 469 106 0 59 chr6 19847744 19847829 -169431725 - AluJo SINE Alu -3 309 230 1034 119 0 50 chr6 19847834 19847993 -169431561 - AluJo SINE Alu -161 151 1 572 280 19 6 chr6 19848634 19848791 -169430763 - MER5B DNA MER1_type -13 165 7 206 236 67 90 chr6 19849057 19849146 -169430408 + MIR SINE MIR 120 206 -56 233 245 0 0 chr6 19849232 19849285 -169430269 + (TA)n Simple_repeat Simple_repeat 1 53 0 191 242 23 8 chr6 19849301 19849433 -169430121 + (TA)n Simple_repeat Simple_repeat 1 134 0 2100 189 23 21 chr6 19849799 19850227 -169429327 + MER54A LTR ERVL 473 901 0 2350 92 0 0 chr6 19851559 19851851 -169427703 + AluSx SINE Alu 1 292 -20 212 318 91 27 chr6 19853335 19853445 -169426109 + L2 LINE L2 3144 3260 -12 37 69 0 0 chr6 19854448 19854520 -169425034 + AT_rich Low_complexity Low_complexity 1 72 0 917 207 0 69 chr6 19855555 19855631 -169423923 + MER5A DNA MER1_type 1 81 -108 1557 69 8 69 chr6 19855631 19855762 -169423792 + L1PA10 LINE L1 5939 6050 -118 4557 110 8 15 chr6 19855762 19856378 -169423176 - LTR9 LTR ERV1 0 612 1 1557 69 8 69 chr6 19856378 19856491 -169423063 + L1PA10 LINE L1 6050 6168 0 917 207 0 69 chr6 19856491 19856617 -169422937 + MER5A DNA MER1_type 81 189 0 675 221 29 23 chr6 19856856 19857028 -169422526 + MER46C DNA MER2_type 1 173 -165 575 165 96 0 chr6 19857391 19857534 -169422020 - L1MC3 LINE L1 -167 7828 7441 390 136 0 15 chr6 19857534 19857600 -169421954 - L1MA5 LINE L1 0 6300 6236 2091 127 16 0 chr6 19857855 19858162 -169421392 - AluSx SINE Alu 0 312 1 2288 128 11 16 chr6 19858188 19858564 -169420990 - L1MA5 LINE L1 -61 6239 5866 835 167 39 13 chr6 19858564 19858720 -169420834 - L1MC3 LINE L1 -329 7456 7297 665 296 116 53 chr6 19858877 19859275 -169420279 - MLT1K LTR MaLR -23 565 143 887 297 22 0 chr6 19859471 19859693 -169419861 - MIR SINE MIR -35 227 1 3916 164 46 31 chr6 19859712 19860480 -169419074 + LTR1 LTR ERV1 7 785 0 227 307 20 59 chr6 19860734 19860835 -169418719 + LTR16A LTR ERVL 346 442 -8 322 313 30 15 chr6 19861025 19861156 -169418398 + L2 LINE L2 3009 3141 -172 293 242 48 18 chr6 19861158 19861323 -169418231 + (TCTA)n Simple_repeat Simple_repeat 1 170 0 315 0 0 0 chr6 19861336 19861371 -169418183 + (CA)n Simple_repeat Simple_repeat 1 35 0 475 269 50 0 chr6 19861385 19861504 -169418050 + L2 LINE L2 3188 3312 -1 2172 99 3 0 chr6 19861537 19861849 -169417705 + AluSx SINE Alu 1 313 0 390 297 120 17 chr6 19862059 19862234 -169417320 + MIR SINE MIR 57 249 -13 210 299 65 28 chr6 19862266 19862373 -169417181 + L3 LINE CR1 1462 1572 -5 578 282 20 7 chr6 19862489 19862638 -169416916 + MIR SINE MIR 1 151 -111 2453 91 0 0 chr6 19862822 19863129 -169416425 + AluSc SINE Alu 1 307 -2 21 0 0 0 chr6 19863979 19864000 -169415554 + AT_rich Low_complexity Low_complexity 1 21 0 419 202 76 19 chr6 19864033 19864166 -169415388 + L1PB4 LINE L1 5919 6061 -94 28 48 0 0 chr6 19865374 19865416 -169414138 + AT_rich Low_complexity Low_complexity 1 42 0 254 115 19 39 chr6 19865684 19865736 -169413818 - L1MA9 LINE L1 0 6312 6262 22 56 0 0 chr6 19865737 19865773 -169413781 + AT_rich Low_complexity Low_complexity 1 36 0 1773 85 29 16 chr6 19865773 19866019 -169413535 - L1PB1 LINE L1 -1 6150 5902 570 238 223 15 chr6 19866020 19866285 -169413269 - L1ME2 LINE L1 -34 6130 5811 1055 103 14 0 chr6 19866312 19866457 -169413097 - AluSg/x SINE Alu -93 219 73 2078 207 148 5 chr6 19866457 19867443 -169412111 - L1ME2 LINE L1 -347 5817 4681 474 238 0 24 chr6 19867448 19867574 -169411980 - L1ME2 LINE L1 -1904 4242 4120 1225 196 31 9 chr6 19868013 19868290 -169411264 + L1ME LINE L1 5328 5609 -512 473 210 0 0 chr6 19868847 19868928 -169410626 - AluJb SINE Alu -189 123 43 25 31 0 0 chr6 19868966 19868998 -169410556 + AT_rich Low_complexity Low_complexity 1 32 0 2143 137 0 3 chr6 19869072 19869379 -169410175 - AluSx SINE Alu -4 308 3 705 254 160 39 chr6 19869390 19869952 -169409602 - L1ME4a LINE L1 -150 5971 5342 393 310 18 0 chr6 19869952 19870065 -169409489 - L2 LINE L2 0 3313 3199 1869 120 53 3 chr6 19870068 19870351 -169409203 - AluSx SINE Alu -15 297 1 385 321 104 49 chr6 19870493 19870820 -169408734 - L1ME4a LINE L1 -1099 5047 4703 294 200 125 25 chr6 19870949 19871069 -169408485 - L1ME4a LINE L1 0 6121 5990 318 212 151 50 chr6 19871138 19871317 -169408237 - L1ME4a LINE L1 -234 5887 5691 2497 119 8 22 chr6 19871462 19871831 -169407723 + THE1B LTR MaLR 1 364 0 2360 82 7 0 chr6 19871879 19872183 -169407371 + AluSp SINE Alu 1 306 -7 970 117 0 48 chr6 19872196 19872341 -169407213 + AluSg SINE Alu 2 139 -171 195 100 0 0 chr6 19872475 19872505 -169407049 + (TG)n Simple_repeat Simple_repeat 1 30 0 2024 61 79 7 chr6 19872938 19873216 -169406338 + AluY SINE Alu 1 298 -13 2005 164 16 16 chr6 19873922 19874288 -169405266 - MER47A DNA MER2_type 0 366 1 837 252 32 5 chr6 19874372 19874590 -169404964 + MER58A DNA MER1_type 1 224 0 438 281 30 55 chr6 19874845 19875009 -169404545 + L2 LINE L2 3134 3293 -20 763 185 0 51 chr6 19875015 19875193 -169404361 - MER104 DNA Tc2 -5 175 7 452 325 25 6 chr6 19877182 19877339 -169402215 + MIR3 SINE MIR 18 177 -31 559 326 85 17 chr6 19877490 19877726 -169401828 - L3 LINE CR1 -3 1574 1323 374 306 189 22 chr6 19877843 19878023 -169401531 - MIR SINE MIR -13 249 40 346 346 9 9 chr6 19878057 19878164 -169401390 - MIR SINE MIR -62 146 40 1071 182 0 0 chr6 19878339 19878509 -169401045 - AluJb SINE Alu -9 303 134 1907 144 11 0 chr6 19878509 19878794 -169400760 - AluSx SINE Alu -11 301 14 289 378 106 0 chr6 19878796 19878984 -169400570 - L3 LINE CR1 -469 1108 901 28 48 0 0 chr6 19879521 19879563 -169399991 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr6 19881090 19881119 -169398435 + AT_rich Low_complexity Low_complexity 1 29 0 992 186 33 0 chr6 19881129 19881312 -169398242 - MER5A DNA MER1_type 0 189 1 260 332 22 90 chr6 19881504 19881772 -169397782 + L2 LINE L2 2948 3197 -75 301 221 97 18 chr6 19882260 19882373 -169397181 + MER103 DNA DNA 11 132 -34 896 158 0 0 chr6 19882390 19882565 -169396989 - FLAM_C SINE Alu 0 175 1 609 120 0 0 chr6 19882782 19882874 -169396680 - AluY SINE Alu -2 309 218 1998 143 31 20 chr6 19883211 19883530 -169396024 - MER46B DNA MER2_type -2495 236 36 2195 143 3 0 chr6 19883530 19883838 -169395716 - AluSx SINE Alu -3 309 1 1998 143 31 20 chr6 19883838 19883875 -169395679 - MER46B DNA MER2_type -2695 36 1 271 288 0 0 chr6 19886996 19887062 -169392492 - L2 LINE L2 -10 3303 3238 1726 151 0 15 chr6 19887065 19887336 -169392218 - AluSx SINE Alu -13 299 33 292 127 0 56 chr6 19887454 19887525 -169392029 + (TCCC)n Simple_repeat Simple_repeat 2 68 0 23 0 0 0 chr6 19887624 19887647 -169391907 + AT_rich Low_complexity Low_complexity 1 23 0 674 254 143 37 chr6 19887665 19888015 -169391539 - MLT1J2 LTR MaLR 0 450 64 1885 79 12 4 chr6 19888625 19888878 -169390676 + L1PA10 LINE L1 5905 6159 -9 943 176 0 0 chr6 19889423 19889600 -169389954 - AluJo/FRAM SINE Alu 0 306 130 467 189 0 0 chr6 19889600 19889674 -169389880 - AluJ/FLAM SINE Alu -232 80 7 195 333 0 27 chr6 19890259 19890334 -169389220 - MIR SINE MIR -61 147 75 7821 130 31 26 chr6 19891927 19893331 -169386223 + L1M4c LINE L1 18 1428 -4956 2015 120 0 27 chr6 19893353 19893652 -169385902 + AluY SINE Alu 1 291 -20 6325 85 0 0 chr6 19893653 19894569 -169384985 - L1PA14 LINE L1 -11 6150 5234 784 128 0 128 chr6 19894570 19894765 -169384789 + L1PA14 LINE L1 5077 5246 -900 * 4587 119 34 26 chr6 19894761 19895608 -169383946 + L1M4c LINE L1 1418 2271 -4113 * 13975 34 0 4 chr6 19895606 19897387 -169382167 - L1PA5 LINE L1 -1168 4978 3205 7513 32 2 0 chr6 19897388 19898558 -169380996 + L1PA5 LINE L1 4978 6149 -5 528 113 26 35 chr6 19898558 19898667 -169380887 + L1M4c LINE L1 2264 2371 -4013 1857 162 16 21 chr6 19898673 19899049 -169380505 + L1MB3 LINE L1 5810 6183 0 261 250 62 42 chr6 19899126 19899222 -169380332 + L2 LINE L2 3208 3305 -8 3061 184 22 30 chr6 19899284 19899924 -169379630 + MER82 DNA MER2_type 19 653 0 1406 134 0 13 chr6 19900593 19900832 -169378722 - L1MA9 LINE L1 0 6312 6077 2438 34 24 0 chr6 19901095 19901389 -169378165 - L1PA5 LINE L1 0 6154 5854 3814 35 6 0 chr6 19901389 19901870 -169377684 + L1P2 LINE L1 5300 5783 -371 390 216 46 106 chr6 19902308 19902712 -169376842 + MLT1C LTR MaLR 1 345 -122 190 256 44 100 chr6 19905528 19905688 -169373866 + MIR SINE MIR 56 206 -56 1829 157 27 0 chr6 19906146 19906439 -169373115 + AluSx SINE Alu 3 303 -9 792 291 10 33 chr6 19906660 19906838 -169372716 + LTR16B LTR ERVL 173 354 -110 189 0 0 0 chr6 19906838 19906859 -169372695 + (CAT)n Simple_repeat Simple_repeat 1 21 0 2176 110 3 0 chr6 19906859 19907150 -169372404 - AluSg SINE Alu -18 292 1 792 291 10 33 chr6 19907150 19907269 -169372285 + LTR16B LTR ERVL 352 464 0 229 236 97 28 chr6 19907798 19907870 -169371684 + MIR3 SINE MIR 110 186 -22 597 252 31 83 chr6 19908278 19908532 -169371022 - MER102b DNA MER1_type -1 340 100 1829 180 0 7 chr6 19908546 19908846 -169370708 - AluJo SINE Alu -9 303 6 25 0 0 0 chr6 19908851 19908876 -169370678 + AT_rich Low_complexity Low_complexity 1 25 0 1524 182 19 0 chr6 19908978 19909247 -169370307 + AluJo SINE Alu 39 312 0 490 328 50 0 chr6 19909340 19909520 -169370034 - MIR SINE MIR 0 262 74 316 196 27 18 chr6 19910733 19910845 -169368709 + CT-rich Low_complexity Low_complexity 2 114 0 293 245 117 10 chr6 19911191 19911253 -169368301 + MIR SINE MIR 20 74 -134 1800 142 15 89 chr6 19911253 19911591 -169367963 - AluSq SINE Alu 0 313 1 293 245 117 10 chr6 19911591 19911649 -169367905 + MIR SINE MIR 74 160 -48 1936 173 24 0 chr6 19911727 19912063 -169367491 - MER7A DNA MER2_type -4 342 1 22 0 0 0 chr6 19912175 19912197 -169367357 + AT_rich Low_complexity Low_complexity 1 22 0 510 266 9 0 chr6 19912681 19912790 -169366764 - MER81 DNA DNA -1 113 4 358 262 14 7 chr6 19913043 19913090 -169366464 + (TA)n Simple_repeat Simple_repeat 1 46 -100 2017 88 4 0 chr6 19913090 19913352 -169366202 + AluY SINE Alu 39 301 -10 358 262 14 7 chr6 19913352 19913449 -169366105 + (TA)n Simple_repeat Simple_repeat 46 146 0 198 0 0 0 chr6 19913548 19913570 -169365984 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 681 230 8 4 chr6 19914213 19914469 -169365085 + CT-rich Low_complexity Low_complexity 1 257 0 854 166 12 14 chr6 19914486 19914992 -169364562 + CT-rich Low_complexity Low_complexity 1 505 0 681 197 6 11 chr6 19915006 19915184 -169364370 + CT-rich Low_complexity Low_complexity 4 180 0 376 224 32 115 chr6 19915617 19915773 -169363781 - MIR SINE MIR -59 203 61 497 276 135 20 chr6 19915911 19916364 -169363190 + L1ME LINE L1 5261 5765 -356 1457 114 10 87 chr6 19916426 19916661 -169362893 - L1MA8 LINE L1 -279 6012 5803 1783 123 98 4 chr6 19916661 19916937 -169362617 - AluSx SINE Alu -6 306 5 1457 114 10 87 chr6 19916937 19917000 -169362554 - L1MA8 LINE L1 -488 5803 5737 568 345 102 34 chr6 19917130 19917853 -169361701 - L2 LINE L2 -1771 1543 871 727 174 76 14 chr6 19917853 19917997 -169361557 + FRAM SINE Alu 1 153 -13 1702 174 26 66 chr6 19918007 19918162 -169361392 + MLT1A1 LTR MaLR 1 161 -204 1607 187 53 13 chr6 19918162 19918278 -169361276 + AluJo SINE Alu 1 111 -201 558 67 0 0 chr6 19918278 19918353 -169361201 + (CA)n Simple_repeat Simple_repeat 1 75 0 1607 187 53 13 chr6 19918353 19918536 -169361018 + AluJo SINE Alu 111 312 0 1702 174 26 66 chr6 19918536 19918760 -169360794 + MLT1A1 LTR MaLR 161 365 0 568 345 102 34 chr6 19918760 19918876 -169360678 - L2 LINE L2 -2451 863 635 336 24 0 0 chr6 19919742 19919783 -169359771 + (CA)n Simple_repeat Simple_repeat 2 42 0 249 248 103 34 chr6 19919984 19920101 -169359453 + 7SK RNA RNA 1 125 -68 508 107 0 0 chr6 19920708 19920783 -169358771 - MADE1 DNA Mariner 0 80 6 207 344 39 31 chr6 19921633 19921761 -169357793 + MIR3 SINE MIR 7 135 -73 586 172 10 0 chr6 19922626 19922725 -169356829 - MER81 DNA DNA -1 113 14 1208 83 0 0 chr6 19922973 19923142 -169356412 - L1MA2 LINE L1 0 6304 6136 1637 42 0 0 chr6 19923142 19923335 -169356219 + L1PA3 LINE L1 5960 6152 -3 5889 110 42 4 chr6 19923343 19924715 -169354839 - L1MA1 LINE L1 -170 6132 4697 28 0 0 0 chr6 19925083 19925111 -169354443 + AT_rich Low_complexity Low_complexity 1 28 0 4604 83 7 0 chr6 19925115 19925691 -169353863 - L1PA10 LINE L1 -11 6157 5578 657 306 104 87 chr6 19925854 19926612 -169352942 + HAL1b LINE L1 1 1839 -668 183 258 0 61 chr6 19927098 19927164 -169352390 + L2 LINE L2 3252 3313 0 21 0 0 0 chr6 19927247 19927268 -169352286 + AT_rich Low_complexity Low_complexity 1 21 0 1936 150 7 3 chr6 19927421 19927727 -169351827 - AluSx SINE Alu -5 307 1 195 348 0 0 chr6 19928715 19928784 -169350770 + MIR SINE MIR 194 262 0 325 322 190 5 chr6 19928920 19929131 -169350423 + L2 LINE L2 1825 2074 -1240 199 390 0 0 chr6 19929224 19929301 -169350253 - L2 LINE L2 -9 3263 3187 430 294 84 52 chr6 19929343 19929690 -169349864 + MLT1I LTR MaLR 40 397 -12 207 100 0 0 chr6 19930483 19930513 -169349041 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 651 31 41 10 chr6 19930520 19930617 -169348937 + (TTTC)n Simple_repeat Simple_repeat 3 102 0 1904 142 0 4 chr6 19930618 19930893 -169348661 - AluSx SINE Alu -38 274 1 3673 113 14 2 chr6 19931085 19931591 -169347963 - MER75 DNA T2_type 0 514 3 2415 106 0 0 chr6 19932039 19932351 -169347203 + AluSx SINE Alu 1 312 0 210 306 100 96 chr6 19932387 19932969 -169346585 - L2 LINE L2 -455 2859 2276 1038 189 92 10 chr6 19933324 19933530 -169346024 - MER58A DNA MER1_type -1 223 1 329 319 57 97 chr6 19935687 19935935 -169343619 - L3 LINE CR1 -107 1470 1233 353 241 12 12 chr6 19936129 19936212 -169343342 - MIR3 SINE MIR -28 180 98 2073 104 14 4 chr6 19936763 19937083 -169342471 + AluSc SINE Alu 1 323 0 198 71 0 0 chr6 19937977 19938005 -169341549 + (GGGAGA)n Simple_repeat Simple_repeat 3 30 0 757 124 0 0 chr6 19938189 19938302 -169341252 - AluSg/x SINE Alu -1 309 197 25 0 0 0 chr6 19938485 19938510 -169341044 + AT_rich Low_complexity Low_complexity 1 25 0 1768 161 58 0 chr6 19938570 19938861 -169340693 + AluJb SINE Alu 1 308 -4 204 40 0 0 chr6 19940211 19940236 -169339318 + (T)n Simple_repeat Simple_repeat 1 25 0 215 211 74 84 chr6 19940854 19940949 -169338605 + MIR SINE MIR 158 251 -11 * 218 255 0 0 chr6 19940915 19940966 -169338588 + L2 LINE L2 3263 3313 0 222 91 0 0 chr6 19941403 19941436 -169338118 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2232 129 0 0 chr6 19941990 19942300 -169337254 - AluSx SINE Alu -2 310 1 227 407 19 12 chr6 19942460 19942622 -169336932 + L2 LINE L2 2930 3092 -180 2390 97 3 0 chr6 19942770 19943081 -169336473 + AluSx SINE Alu 1 312 0 289 339 8 0 chr6 19943906 19944033 -169335521 + MIR SINE MIR 132 259 -3 207 292 46 0 chr6 19945707 19945772 -169333782 + L3 LINE CR1 1509 1576 -1 193 26 53 53 chr6 19945803 19945841 -169333713 + (TAAG)n Simple_repeat Simple_repeat 4 41 0 1759 184 3 0 chr6 19946427 19946721 -169332833 - AluJb SINE Alu -17 295 1 222 37 0 0 chr6 19946721 19946748 -169332806 + (T)n Simple_repeat Simple_repeat 1 27 0 205 344 33 11 chr6 19946748 19946838 -169332716 - MIR SINE MIR -92 116 25 2362 82 0 0 chr6 19946869 19947161 -169332393 + AluSc SINE Alu 1 292 -17 216 0 0 0 chr6 19947922 19947946 -169331608 + (T)n Simple_repeat Simple_repeat 1 24 0 2142 101 34 0 chr6 19948534 19948832 -169330722 + AluSq SINE Alu 1 308 -5 511 248 239 10 chr6 19953023 19953333 -169326221 + L1ME4a LINE L1 5736 6116 -5 35 0 0 0 chr6 19953364 19953399 -169326155 + AT_rich Low_complexity Low_complexity 1 35 0 373 266 55 51 chr6 19955468 19955624 -169323930 + MIR SINE MIR 35 191 -62 641 228 137 25 chr6 19955627 19955868 -169323686 + L2 LINE L2 3046 3313 0 546 272 88 55 chr6 19955910 19956127 -169323427 + MIR SINE MIR 2 225 -37 2348 131 70 15 chr6 19956456 19956853 -169322701 - MSTA LTR MaLR -9 419 1 6803 170 59 4 chr6 19956853 19958058 -169321496 - MSTA-int LTR MaLR 0 1651 381 473 324 71 18 chr6 19958224 19958449 -169321105 - MIR SINE MIR -6 256 20 263 302 22 122 chr6 19958684 19958906 -169320648 + L2 LINE L2 3048 3247 -25 398 296 184 14 chr6 19959410 19959633 -169319921 + MIR SINE MIR 2 262 0 278 294 31 47 chr6 19959816 19959932 -169319622 + MIR3 SINE MIR 48 160 -48 281 286 11 0 chr6 19959934 19960025 -169319529 - MER117 DNA MER1_type -2 195 104 184 220 20 20 chr6 19960119 19960169 -169319385 + MIR3 SINE MIR 159 208 0 638 247 20 0 chr6 19961004 19961150 -169318404 - MLT1A1 LTR MaLR 0 365 217 498 337 35 5 chr6 19961592 19961794 -169317760 - MIR SINE MIR -10 252 45 24 0 0 0 chr6 19962874 19962898 -169316656 + AT_rich Low_complexity Low_complexity 1 24 0 414 57 0 0 chr6 19963603 19963656 -169315898 + (TTTCC)n Simple_repeat Simple_repeat 1 53 0 2239 88 18 0 chr6 19963672 19963957 -169315597 - AluSc SINE Alu -19 290 1 243 0 0 0 chr6 19965319 19965346 -169314208 + (T)n Simple_repeat Simple_repeat 1 27 0 2464 164 34 7 chr6 19966138 19966552 -169313002 - MSTA LTR MaLR 0 428 4 6266 180 102 62 chr6 19966553 19968070 -169311484 - MSTA-int LTR MaLR 0 1580 3 2490 164 19 24 chr6 19968077 19968503 -169311051 - MSTA LTR MaLR -4 424 1 1351 146 32 14 chr6 19968503 19968723 -169310831 + MSTB1 LTR MaLR 79 302 -130 234 192 0 0 chr6 19968971 19969023 -169310531 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 1178 246 87 58 chr6 19969045 19969549 -169310005 - L1MC4 LINE L1 -142 7900 7382 2301 172 8 14 chr6 19969758 19970125 -169309429 + MLT1A1 LTR MaLR 1 365 0 21 36 0 0 chr6 19970905 19970933 -169308621 + AT_rich Low_complexity Low_complexity 1 28 0 339 44 0 0 chr6 19971492 19971537 -169308017 + (T)n Simple_repeat Simple_repeat 1 45 0 183 80 0 0 chr6 19971564 19971589 -169307965 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 480 317 180 25 chr6 19971787 19972494 -169307060 - L1ME4a LINE L1 -3 6118 5303 3696 155 11 9 chr6 19972784 19973418 -169306136 + L1MA8 LINE L1 5652 6286 -5 1017 325 123 27 chr6 19973561 19974191 -169305363 + L3 LINE CR1 272 1011 -566 1471 167 147 82 chr6 19974191 19974580 -169304974 - MLT2D LTR ERVL 0 414 1 1017 325 123 27 chr6 19974580 19974830 -169304724 + L3 LINE CR1 1011 1236 -341 637 277 126 25 chr6 19974833 19975111 -169304443 - MLT1K LTR MaLR -2 586 281 7439 151 35 39 chr6 19975144 19976098 -169303456 + L1MA7 LINE L1 3769 4726 -1565 312 48 0 0 chr6 19976098 19976140 -169303414 + (CAA)n Simple_repeat Simple_repeat 1 42 0 7439 151 35 39 chr6 19976140 19977235 -169302319 + L1MA7 LINE L1 4726 5788 -503 201 39 0 0 chr6 19977235 19977261 -169302293 + (CA)n Simple_repeat Simple_repeat 1 26 0 7439 151 35 39 chr6 19977261 19977641 -169301913 + L1MA7 LINE L1 5788 6168 -123 547 335 132 10 chr6 19977826 19978136 -169301418 + L3 LINE CR1 1229 1576 -1 217 246 18 0 chr6 19979074 19979131 -169300423 + MIR SINE MIR 107 164 -98 615 265 74 56 chr6 19979710 19980034 -169299520 - LTR33 LTR ERVL -187 334 5 2347 99 3 0 chr6 19980755 19981058 -169298496 - AluSx SINE Alu 0 312 9 1941 96 37 51 chr6 19982348 19982702 -169296852 + L1PA13 LINE L1 5812 6160 -3 256 303 34 0 chr6 19983024 19983113 -169296441 + MIR SINE MIR 123 214 -48 594 293 66 47 chr6 19983156 19983395 -169296159 - MIR SINE MIR -16 246 7 392 341 101 36 chr6 19983672 19984186 -169295368 - L2 LINE L2 -1 3271 2715 404 321 80 15 chr6 19984486 19984623 -169294931 + MIR3 SINE MIR 47 192 -16 343 383 22 17 chr6 19984771 19984951 -169294603 - MIR3 SINE MIR -13 195 15 1726 219 54 43 chr6 19989998 19990460 -169289094 + MLT1C LTR MaLR 1 467 0 637 193 70 46 chr6 19990932 19991271 -169288283 - MER31B LTR ERV1 -5 461 1 294 191 238 41 chr6 19991662 19991809 -169287745 + LTR33 LTR ERVL 72 247 -276 308 318 129 18 chr6 19992731 19992901 -169286653 + MIR SINE MIR 7 195 -67 471 35 0 0 chr6 19993323 19993380 -169286174 + (CA)n Simple_repeat Simple_repeat 2 58 0 1201 145 28 5 chr6 19993380 19993594 -169285960 - MER46A DNA MER2_type -2 234 16 2495 210 50 39 chr6 19994223 19994808 -169284746 + MLT1E LTR MaLR 3 593 0 586 200 91 24 chr6 19995728 19995893 -169283661 + MER5B DNA MER1_type 1 176 -2 1713 149 82 7 chr6 19996168 19996450 -169283104 - AluJb SINE Alu -9 303 1 259 308 113 13 chr6 19996552 19996711 -169282843 - L2 LINE L2 -188 3084 2910 1734 184 113 30 chr6 19996743 19997184 -169282370 + MLT1D LTR MaLR 28 505 0 2378 71 0 3 chr6 19997342 19997636 -169281918 + AluY SINE Alu 1 293 -18 425 345 14 7 chr6 19997825 19997973 -169281581 - MIR3 SINE MIR -57 151 3 1937 119 0 18 chr6 19998412 19998743 -169280811 - AluSc SINE Alu 0 326 1 22 35 0 0 chr6 19999306 19999335 -169280219 + AT_rich Low_complexity Low_complexity 1 29 0 2641 171 13 6 chr6 19999342 19999864 -169279690 - L1MC2 LINE L1 -19 6325 5800 196 307 72 72 chr6 20000458 20000624 -169278930 + MER5A DNA MER1_type 1 166 -23 736 238 6 0 chr6 20000642 20000806 -169278748 - MER58A DNA MER1_type -14 210 46 1687 168 34 0 chr6 20000825 20001093 -169278461 + AluJb SINE Alu 1 277 -35 3436 138 16 2 chr6 20001110 20001691 -169277863 + L1MB3 LINE L1 5593 6181 -2 282 29 0 0 chr6 20002956 20002991 -169276563 + (TG)n Simple_repeat Simple_repeat 1 35 0 1783 173 35 49 chr6 20003082 20003452 -169276102 + MLT1A1 LTR MaLR 1 365 0 296 258 48 0 chr6 20003993 20004055 -169275499 - MIR SINE MIR -190 72 8 376 275 0 64 chr6 20004226 20004397 -169275157 + MIR SINE MIR 89 248 -14 24569 131 17 20 chr6 20005016 20011414 -169268140 + L1PA8A LINE L1 4 6444 -2 1234 98 0 0 chr6 20014131 20014294 -169265260 - AluSg/x SINE Alu -16 296 134 2196 108 7 3 chr6 20014294 20014599 -169264955 - AluSq SINE Alu -7 306 1 404 257 164 26 chr6 20014787 20014939 -169264615 - MIR SINE MIR -21 241 69 241 128 33 44 chr6 20015567 20015747 -169263807 + (TA)n Simple_repeat Simple_repeat 1 178 0 464 222 7 0 chr6 20016522 20016666 -169262888 + CT-rich Low_complexity Low_complexity 3 147 0 498 170 0 0 chr6 20019643 20019737 -169259817 + CT-rich Low_complexity Low_complexity 4 97 0 647 73 31 0 chr6 20019766 20019862 -169259692 + (TTCTC)n Simple_repeat Simple_repeat 5 103 0 190 333 76 0 chr6 20019864 20019930 -169259624 - L2 LINE L2 -1 3271 3201 805 303 73 62 chr6 20019969 20020807 -169258747 + L2 LINE L2 2437 3276 -37 1034 165 170 116 chr6 20020919 20021289 -169258265 - MLT1B LTR MaLR 0 390 1 24 0 0 0 chr6 20025333 20025357 -169254197 + AT_rich Low_complexity Low_complexity 1 24 0 380 250 177 55 chr6 20025928 20026092 -169253462 + MIR3 SINE MIR 18 201 -7 307 395 93 0 chr6 20026305 20026467 -169253087 - L2 LINE L2 -15 3257 3081 2497 151 13 0 chr6 20027262 20027640 -169251914 + MSTB LTR MaLR 1 383 -43 853 336 43 37 chr6 20027812 20028297 -169251257 + MLT1H1 LTR MaLR 41 528 -27 6254 166 23 12 chr6 20028505 20030091 -169249463 + L1MC1 LINE L1 4733 6332 -1 274 242 91 0 chr6 20030220 20030286 -169249268 - MIR SINE MIR -71 191 120 383 277 6 38 chr6 20032609 20032768 -169246786 - HAL1b LINE L1 -4 1344 1191 230 234 31 0 chr6 20032828 20032892 -169246662 + (TA)n Simple_repeat Simple_repeat 2 67 0 183 200 29 14 chr6 20033013 20033083 -169246471 + CT-rich Low_complexity Low_complexity 2 72 0 231 240 128 16 chr6 20033210 20033335 -169246219 - L1P4 LINE L1 -698 5468 5330 1205 218 4 4 chr6 20033580 20033819 -169245735 - AluJo SINE Alu -15 297 59 2583 214 50 19 chr6 20034433 20035290 -169244264 - L1ME LINE L1 -667 5566 4685 2409 263 42 46 chr6 20035301 20036507 -169243047 - L1ME LINE L1 -4386 2010 810 1039 168 0 11 chr6 20036580 20036759 -169242795 - AluSg/x SINE Alu 0 310 134 474 209 95 0 chr6 20036761 20036919 -169242635 - L1ME LINE L1 -5571 825 653 188 189 38 0 chr6 20036961 20037014 -169242540 + (CAATT)n Simple_repeat Simple_repeat 1 55 0 546 258 61 88 chr6 20037065 20037395 -169242159 - MER21B LTR ERV1 -260 603 283 1045 216 8 124 chr6 20037399 20037761 -169241793 - MLT1A2 LTR MaLR 0 374 55 314 328 0 16 chr6 20037767 20037892 -169241662 + L1MEc LINE L1 940 1062 -5334 184 367 92 31 chr6 20038108 20038206 -169241348 - L2 LINE L2 -32 3240 3137 363 321 91 24 chr6 20038924 20039089 -169240465 - MIR SINE MIR -82 180 5 397 311 0 22 chr6 20039170 20039306 -169240248 - MER5A DNA MER1_type -10 168 39 186 255 21 0 chr6 20039315 20039362 -169240192 + MER5B DNA MER1_type 125 172 -6 538 248 161 0 chr6 20039615 20039764 -169239790 + MER5B DNA MER1_type 1 173 -5 198 309 151 8 chr6 20040148 20040274 -169239280 - L2 LINE L2 -8 3305 3162 189 0 0 0 chr6 20040438 20040459 -169239095 + (CA)n Simple_repeat Simple_repeat 2 22 0 197 383 54 40 chr6 20044785 20044934 -169234620 + L2 LINE L2 3004 3154 -118 21 89 0 0 chr6 20044999 20045055 -169234499 + AT_rich Low_complexity Low_complexity 1 56 0 1846 158 24 0 chr6 20045105 20045396 -169234158 - AluJo SINE Alu -14 298 1 284 298 44 89 chr6 20045778 20045936 -169233618 - MIR SINE MIR -79 183 33 333 0 0 0 chr6 20046345 20046382 -169233172 + (TG)n Simple_repeat Simple_repeat 2 38 0 1102 210 13 18 chr6 20046979 20047208 -169232346 - MIR SINE MIR -21 241 14 309 77 0 0 chr6 20048466 20048505 -169231049 + MADE1 DNA Mariner 1 39 -41 21 36 0 0 chr6 20048520 20048548 -169231006 + AT_rich Low_complexity Low_complexity 1 28 0 404 192 346 8 chr6 20048730 20048860 -169230694 + MER5A DNA MER1_type 9 182 -7 249 33 0 0 chr6 20049002 20049032 -169230522 + (TG)n Simple_repeat Simple_repeat 2 31 0 398 287 81 34 chr6 20050648 20050857 -169228697 - MIR SINE MIR -37 225 7 1429 226 134 53 chr6 20051345 20051778 -169227776 + MLT2B1 LTR ERVL 1 468 -52 2380 178 11 104 chr6 20051783 20052351 -169227203 + MLT2B2 LTR ERVL 1 515 0 804 153 217 26 chr6 20052911 20053100 -169226454 - L1MB5 LINE L1 -14 6160 5936 13730 165 33 13 chr6 20053261 20057025 -169222529 - L1MA6 LINE L1 -9 6291 2448 1852 208 6 6 chr6 20058105 20058470 -169221084 - MLT1A1 LTR MaLR 0 365 1 313 197 15 15 chr6 20058932 20058998 -169220556 - L3 LINE CR1 -683 894 829 219 69 0 0 chr6 20059190 20059219 -169220335 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 1228 177 146 16 chr6 20059229 20059483 -169220071 - AluJo SINE Alu -15 287 1 261 0 0 0 chr6 20063224 20063253 -169216301 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3236 85 32 21 chr6 20063258 20063730 -169215824 - L1PA11 LINE L1 -8 6166 5690 1758 166 42 86 chr6 20065870 20066303 -169213251 + MLT2D LTR ERVL 1 414 0 287 314 33 33 chr6 20066308 20066429 -169213125 - MIR3 SINE MIR -19 189 69 1277 175 17 115 chr6 20067173 20067590 -169211964 - L1MC4 LINE L1 0 8042 7667 204 206 9 84 chr6 20068031 20068138 -169211416 + T-rich Low_complexity Low_complexity 3 101 0 818 274 86 57 chr6 20068165 20068854 -169210700 - HAL1 LINE L1 -170 2337 1629 577 190 0 0 chr6 20068840 20068940 -169210614 + L1P4 LINE L1 2613 2712 -4137 * 2272 154 26 0 chr6 20068944 20069333 -169210221 + MER57A LTR ERV1 1 399 -4 15261 125 66 40 chr6 20069342 20071460 -169208094 + MER57A-int LTR ERV1 1 2063 -5474 322 250 0 0 chr6 20071460 20071524 -169208030 + AluJ/FRAM SINE Alu 232 295 -7 2116 116 3 13 chr6 20071526 20071829 -169207725 + AluSx SINE Alu 1 300 -12 15261 125 66 40 chr6 20071829 20072175 -169207379 + MER57A-int LTR ERV1 2063 2596 -4941 * 28828 105 50 34 chr6 20072168 20076751 -169202803 + MER57A-int LTR ERV1 2874 7531 -6 2226 178 10 0 chr6 20076756 20077155 -169202399 + MER57A LTR ERV1 1 403 0 12888 210 22 16 chr6 20077155 20078256 -169201298 + L1P4 LINE L1 2713 3806 -3062 222 59 20 39 chr6 20078256 20078307 -169201247 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 12888 210 22 16 chr6 20078307 20078886 -169200668 + L1P4 LINE L1 3806 4380 -2488 2097 106 4 0 chr6 20078886 20079159 -169200395 + AluSp SINE Alu 17 290 -23 12888 210 22 16 chr6 20079159 20081004 -169198550 + L1P4 LINE L1 4380 6253 -615 367 111 0 0 chr6 20081003 20081057 -169198497 + L1P4 LINE L1 5497 5550 -611 * 3964 156 1 10 chr6 20081058 20081731 -169197823 + L1PA15 LINE L1 5499 6165 0 214 364 10 20 chr6 20082124 20082223 -169197331 + MIR SINE MIR 53 150 -112 210 71 0 0 chr6 20082302 20082330 -169197224 + (TTA)n Simple_repeat Simple_repeat 1 28 0 323 230 64 79 chr6 20082550 20082847 -169196707 - L1MEc LINE L1 -3771 2375 2110 674 34 23 0 chr6 20083172 20083260 -169196294 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 533 319 26 35 chr6 20083344 20083576 -169195978 + L3 LINE CR1 457 686 -891 225 395 22 0 chr6 20084163 20084297 -169195257 + L3 LINE CR1 1110 1246 -331 21 36 0 0 chr6 20084654 20084682 -169194872 + AT_rich Low_complexity Low_complexity 1 28 0 185 258 17 150 chr6 20084759 20084879 -169194675 + L3 LINE CR1 1461 1564 -13 795 273 62 72 chr6 20085339 20085940 -169193614 + L1M4 LINE L1 2861 3455 -2691 22 0 0 0 chr6 20086001 20086023 -169193531 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 20086047 20086076 -169193478 + AT_rich Low_complexity Low_complexity 1 29 0 2111 103 0 0 chr6 20086243 20086553 -169193001 + AluSx SINE Alu 1 310 0 303 164 0 0 chr6 20086615 20086670 -169192884 + LTR19B LTR ERV1 526 580 0 452 328 129 38 chr6 20086696 20087276 -169192278 + L1M4 LINE L1 3795 4427 -1719 1815 142 22 0 chr6 20087431 20087748 -169191806 + L1MA10 LINE L1 5320 5643 -525 1674 142 48 21 chr6 20087748 20088079 -169191475 + L1MA10 LINE L1 5986 6331 -3 332 200 11 0 chr6 20088110 20088200 -169191354 + (TATG)n Simple_repeat Simple_repeat 2 92 0 1847 170 17 0 chr6 20088202 20088490 -169191064 - AluJo SINE Alu -19 293 1 22 70 0 0 chr6 20088630 20088673 -169190881 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr6 20089194 20089227 -169190327 + AT_rich Low_complexity Low_complexity 1 33 0 207 164 60 15 chr6 20089746 20089813 -169189741 + (TA)n Simple_repeat Simple_repeat 1 70 0 1683 221 68 38 chr6 20090027 20090188 -169189366 + MER74B LTR ERVL 1 156 -466 2089 122 10 3 chr6 20090188 20090483 -169189071 + AluSg SINE Alu 1 297 -13 1683 221 68 38 chr6 20090483 20090850 -169188704 + MER74B LTR ERVL 156 545 -77 252 219 48 68 chr6 20090999 20091145 -169188409 + L1ME4a LINE L1 5945 6087 -34 1783 230 34 50 chr6 20092783 20093279 -169186275 - LTR40a LTR ERVL 0 519 32 331 155 70 0 chr6 20093279 20093350 -169186204 - LTR40a LTR ERVL -443 76 1 1323 211 46 38 chr6 20093576 20094106 -169185448 + MLT1E3 LTR MaLR 70 624 0 426 319 99 14 chr6 20094276 20094489 -169185065 - MIR SINE MIR 0 262 32 2630 46 0 0 chr6 20094494 20094800 -169184754 - AluY SINE Alu -5 306 1 946 256 78 25 chr6 20094912 20095233 -169184321 + MLT1I LTR MaLR 64 401 -8 229 386 18 9 chr6 20095307 20095421 -169184133 + L2 LINE L2 2849 2963 -309 665 245 27 33 chr6 20095433 20095617 -169183937 + MIR SINE MIR 7 189 -73 37 39 0 0 chr6 20095617 20095668 -169183886 + AT_rich Low_complexity Low_complexity 1 51 0 315 327 165 40 chr6 20095697 20095945 -169183609 + L2 LINE L2 2993 3271 -1 27 49 0 0 chr6 20097722 20097763 -169181791 + AT_rich Low_complexity Low_complexity 1 41 0 278 322 11 23 chr6 20098235 20098412 -169181142 + T-rich Low_complexity Low_complexity 4 178 0 333 0 0 0 chr6 20098484 20098521 -169181033 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 435 38 0 0 chr6 20098520 20098573 -169180981 + (TC)n Simple_repeat Simple_repeat 1 53 0 195 42 0 0 chr6 20098572 20098596 -169180958 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 202 277 0 75 chr6 20099187 20099281 -169180273 + MIR SINE MIR 54 140 -68 246 333 49 10 chr6 20100715 20100817 -169178737 - MIR3 SINE MIR -11 197 92 797 162 18 54 chr6 20101325 20101492 -169178062 + MER5A DNA MER1_type 28 188 -1 2483 74 151 5 chr6 20103056 20103447 -169176107 - LTR7 LTR ERV1 -2 448 1 2268 96 48 13 chr6 20103447 20103824 -169175730 - HERVH LTR ERV1 0 7713 7324 1285 139 19 0 chr6 20103824 20104040 -169175514 - HERVH LTR ERV1 -1894 5819 5600 4136 115 44 0 chr6 20104041 20104675 -169174879 - HERVH LTR ERV1 -2564 5149 4488 3380 86 4 6 chr6 20104677 20105180 -169174374 - HERVH LTR ERV1 -3720 3993 3492 854 142 20 0 chr6 20105170 20105318 -169174236 - HERVH LTR ERV1 -4423 3290 3140 * 18818 92 10 40 chr6 20105312 20108390 -169171164 - HERVH LTR ERV1 -4726 2987 1 2488 77 151 5 chr6 20108392 20108783 -169170771 - LTR7 LTR ERV1 -2 448 1 476 353 15 34 chr6 20109054 20109258 -169170296 + MIR SINE MIR 2 201 -61 279 325 25 0 chr6 20109356 20109436 -169170118 + L2 LINE L2 3186 3267 -5 3381 170 13 42 chr6 20109934 20110688 -169168866 - L1MB3 LINE L1 -2 6181 5450 1430 218 50 3 chr6 20110724 20111027 -169168527 + MLT1A1 LTR MaLR 49 365 0 231 152 0 0 chr6 20111072 20111118 -169168436 + CT-rich Low_complexity Low_complexity 4 49 0 3049 240 158 8 chr6 20111407 20112461 -169167093 + L1MC4 LINE L1 6459 7670 -372 333 0 0 0 chr6 20112506 20112543 -169167011 + (TTA)n Simple_repeat Simple_repeat 1 37 0 2159 120 0 0 chr6 20112546 20112829 -169166725 - AluSx SINE Alu -29 283 1 1124 221 8 40 chr6 20112842 20113007 -169166547 - AluJb SINE Alu -18 294 138 2171 110 10 0 chr6 20113007 20113299 -169166255 - AluSx SINE Alu -17 295 1 1124 221 8 40 chr6 20113299 20113386 -169166168 - AluJb SINE Alu -174 138 50 447 257 0 0 chr6 20113441 20113554 -169166000 + L1MC4 LINE L1 7787 7899 -143 2136 190 42 6 chr6 20113829 20114324 -169165230 + L1MD3 LINE L1 7473 7985 -10 440 340 68 38 chr6 20115218 20115483 -169164071 + L1MC/D LINE L1 5512 5784 -2024 1238 182 104 17 chr6 20115553 20115850 -169163704 + MER33 DNA MER1_type 1 323 -1 991 301 68 39 chr6 20116824 20117253 -169162301 - L2 LINE L2 -1 3312 2866 1745 172 7 13 chr6 20117253 20117555 -169161999 + AluJb SINE Alu 1 300 -12 991 301 68 39 chr6 20117555 20117607 -169161947 - L2 LINE L2 -447 2866 2817 412 99 28 0 chr6 20117608 20117679 -169161875 + GA-rich Low_complexity Low_complexity 4 76 0 2093 138 0 3 chr6 20117679 20117991 -169161563 + AluSx SINE Alu 1 311 -1 574 319 168 22 chr6 20118004 20118408 -169161146 - L2 LINE L2 -445 2869 2407 2312 237 41 12 chr6 20118411 20119064 -169160490 + L1ME1 LINE L1 5486 6157 -9 2443 70 0 0 chr6 20119064 20119362 -169160192 - AluY SINE Alu -13 298 1 886 291 38 50 chr6 20119377 20119820 -169159734 - L2 LINE L2 -1573 1741 1304 3218 95 59 6 chr6 20119820 20120293 -169159261 + Charlie3 DNA MER1_type 1 498 -2212 * 3302 79 8 19 chr6 20120289 20120759 -169158795 + Charlie3 DNA MER1_type 2242 2706 -4 621 272 133 5 chr6 20120760 20120955 -169158599 - L2 LINE L2 -2004 1310 1091 359 250 0 0 chr6 20121167 20121255 -169158299 - MER63 DNA MER1_type 0 1060 973 * 385 164 0 0 chr6 20121253 20121314 -169158240 - MER63 DNA MER1_type -317 743 683 587 318 99 50 chr6 20121976 20122922 -169156632 + L2 LINE L2 2315 3313 0 341 256 128 32 chr6 20123038 20123194 -169156360 - MIR3 SINE MIR -17 191 21 268 240 144 56 chr6 20123631 20123756 -169155798 + MIR SINE MIR 121 256 -6 247 71 48 0 chr6 20124164 20124206 -169155348 + MER53 DNA DNA 1 44 -145 2385 84 0 13 chr6 20124266 20124574 -169154980 + AluSc SINE Alu 6 309 0 1750 214 84 7 chr6 20124716 20125146 -169154408 - MLT1C LTR MaLR -4 463 1 1580 191 50 3 chr6 20125796 20126078 -169153476 - AluJb SINE Alu -17 295 1 2038 143 13 3 chr6 20126587 20126887 -169152667 + AluJb SINE Alu 1 303 -9 353 280 83 15 chr6 20127825 20127957 -169151597 - L1ME4a LINE L1 -25 6096 5956 517 333 60 32 chr6 20128061 20128310 -169151244 + MIR SINE MIR 5 260 -2 631 314 82 18 chr6 20128310 20128651 -169150903 - L1ME4a LINE L1 -265 5856 5494 225 0 0 0 chr6 20128654 20128679 -169150875 + (TG)n Simple_repeat Simple_repeat 2 26 0 507 207 129 159 chr6 20129099 20129340 -169150214 + MLT1H1 LTR MaLR 112 335 -220 2030 131 0 0 chr6 20129340 20129656 -169149898 + AluSx SINE Alu 1 316 0 507 207 129 159 chr6 20129656 20129871 -169149683 + MLT1H1 LTR MaLR 335 555 0 2765 299 70 24 chr6 20132488 20133941 -169145613 + L1MEc LINE L1 35 1554 -4842 2444 76 0 0 chr6 20134071 20134374 -169145180 - AluY SINE Alu -8 303 1 2744 148 42 18 chr6 20134382 20134888 -169144666 - L1MC1 LINE L1 0 6333 5816 1021 182 5 5 chr6 20134973 20134986 -169144568 - L1MC1 LINE L1 0 6333 6321 975 106 11 17 chr6 20134986 20135165 -169144389 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 1021 182 5 5 chr6 20135165 20135343 -169144211 - L1MC1 LINE L1 -11 6322 6142 252 278 74 36 chr6 20135344 20135653 -169143901 - L1MEd LINE L1 -3704 2425 2105 1042 284 116 35 chr6 20136448 20137157 -169142397 - L1MEd LINE L1 -4862 1257 492 234 256 233 57 chr6 20137363 20137539 -169142015 - L1MEd LINE L1 -5857 262 56 197 301 140 29 chr6 20137757 20137893 -169141661 + L3 LINE CR1 295 445 -1132 213 353 0 0 chr6 20137911 20138013 -169141541 + L3 LINE CR1 387 488 -1089 519 266 161 14 chr6 20138016 20138234 -169141320 + LTR16C LTR ERVL 1 250 -241 611 346 123 48 chr6 20138389 20138952 -169140602 + L3 LINE CR1 486 1120 -457 5206 124 22 15 chr6 20138952 20139962 -169139592 - L1PA16 LINE L1 -10 6156 5128 611 346 123 48 chr6 20139962 20140149 -169139405 + L3 LINE CR1 1120 1292 -285 340 291 0 0 chr6 20140173 20140252 -169139302 + L2 LINE L2 3193 3271 -1 397 282 60 0 chr6 20141524 20141641 -169137913 + MIR3 SINE MIR 83 206 -2 204 44 0 67 chr6 20144018 20144063 -169135491 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 2021 160 38 24 chr6 20144515 20144939 -169134615 - MSTB1 LTR MaLR -2 430 1 971 105 29 0 chr6 20145069 20145241 -169134313 + CT-rich Low_complexity Low_complexity 3 179 0 1016 145 0 6 chr6 20145256 20145435 -169134119 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 270 71 18 36 chr6 20145442 20145498 -169134056 + (TTCCC)n Simple_repeat Simple_repeat 2 56 0 1255 227 58 7 chr6 20145502 20145793 -169133761 - AluJo SINE Alu -6 306 1 396 0 0 0 chr6 20146955 20146999 -169132555 + (GA)n Simple_repeat Simple_repeat 1 44 0 386 283 128 46 chr6 20148789 20149093 -169130461 - L1M4 LINE L1 -2439 3707 3379 1904 269 181 25 chr6 20149256 20150332 -169129222 - L2 LINE L2 -1519 1795 552 10306 221 56 10 chr6 20151013 20152953 -169126601 - L1MC1 LINE L1 0 7128 5279 198 0 0 0 chr6 20152953 20152975 -169126579 + (TTG)n Simple_repeat Simple_repeat 3 24 0 10306 221 56 10 chr6 20152975 20154911 -169124643 - L1MC1 LINE L1 -1849 5279 3072 343 279 85 95 chr6 20154952 20155257 -169124297 - HAL1 LINE L1 -37 2470 2169 242 328 49 16 chr6 20155501 20155623 -169123931 + L2 LINE L2 897 1022 -2292 339 146 0 0 chr6 20155627 20155682 -169123872 - Alu SINE Alu -3 298 244 301 139 120 148 chr6 20155678 20155723 -169123831 - MER44D DNA MER2_type -1914 573 528 * 459 35 0 0 chr6 20155723 20155780 -169123774 + (CA)n Simple_repeat Simple_repeat 1 57 0 301 139 120 148 chr6 20155780 20155842 -169123712 - MER44D DNA MER2_type -1959 528 469 282 203 89 0 chr6 20155845 20155924 -169123630 - L1MC4 LINE L1 -1344 6698 6613 311 277 0 17 chr6 20155927 20156046 -169123508 + (TA)n Simple_repeat Simple_repeat 1 117 0 2295 187 71 2 chr6 20156046 20156469 -169123085 - MER44D DNA MER2_type -98 507 1 312 292 23 23 chr6 20156511 20156682 -169122872 - L1MC1 LINE L1 -6217 206 36 1491 239 98 21 chr6 20156924 20157396 -169122158 - L1ME1 LINE L1 -20 6146 5639 359 291 48 96 chr6 20157413 20157705 -169121849 - HAL1 LINE L1 -1421 1086 809 862 173 25 0 chr6 20157712 20157874 -169121680 + L1MA7 LINE L1 5442 5607 -705 1630 143 27 10 chr6 20157912 20158212 -169121342 + L1MA7 LINE L1 5982 6286 -5 556 180 27 0 chr6 20158218 20158329 -169121225 + L1MA9 LINE L1 6163 6276 -36 190 312 22 11 chr6 20158712 20158839 -169120715 - MER5B DNA MER1_type -10 179 3 191 367 0 0 chr6 20160025 20160115 -169119439 + MER5A DNA MER1_type 90 179 -10 212 353 71 40 chr6 20160456 20160746 -169118808 - L2 LINE L2 -18 3254 2883 522 339 139 50 chr6 20160809 20162001 -169117553 - L2 LINE L2 -505 2809 1511 1154 246 121 21 chr6 20163440 20164225 -169115329 - L1MCa LINE L1 -3519 2907 2087 466 245 126 53 chr6 20164232 20164639 -169114915 - L1MCa LINE L1 -4889 1546 924 1611 196 0 11 chr6 20164930 20165215 -169114339 + AluJb SINE Alu 1 282 -30 1106 185 28 5 chr6 20167512 20167723 -169111831 + AluJo SINE Alu 87 302 -10 23 54 0 0 chr6 20167786 20167823 -169111731 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 20168342 20168365 -169111189 + AT_rich Low_complexity Low_complexity 1 23 0 337 325 16 32 chr6 20168996 20169119 -169110435 - MER5A DNA MER1_type 0 189 69 612 232 13 2 chr6 20169938 20170097 -169109457 + L1ME3 LINE L1 5856 6013 -157 839 273 31 4 chr6 20170469 20170725 -169108829 - L1ME3 LINE L1 -6 6156 5894 324 339 134 13 chr6 20170772 20171011 -169108543 - HAL1 LINE L1 -2001 506 239 254 385 0 10 chr6 20171095 20171199 -169108355 + MIR3 SINE MIR 15 117 -91 219 220 169 17 chr6 20171267 20171326 -169108228 - MIR SINE MIR -104 104 37 1560 95 63 130 chr6 20171689 20172036 -169107518 - L1MA3 LINE L1 -1 6304 5981 886 251 0 0 chr6 20172035 20172222 -169107332 + MST-int LTR MaLR 746 932 -719 * 1177 141 0 5 chr6 20172225 20172410 -169107144 + MSTA LTR MaLR 245 428 0 206 282 188 0 chr6 20172493 20172578 -169106976 - L3 LINE CR1 -85 1492 1392 1706 159 17 17 chr6 20173483 20173784 -169105770 - AluSq SINE Alu -12 301 1 1091 160 63 93 chr6 20173882 20174214 -169105340 - MER33 DNA MER1_type -2 322 1 195 311 40 14 chr6 20175015 20175089 -169104465 - MIR3 SINE MIR -27 181 106 773 245 58 5 chr6 20175422 20175673 -169103881 + L2 LINE L2 2764 3022 -291 462 114 0 0 chr6 20176188 20176258 -169103296 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 21 0 0 0 chr6 20176752 20176773 -169102781 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr6 20176824 20176874 -169102680 + AT_rich Low_complexity Low_complexity 1 50 0 502 124 31 0 chr6 20177779 20177876 -169101678 + GA-rich Low_complexity Low_complexity 3 102 0 460 279 16 14 chr6 20177905 20178078 -169101476 + L1ME2 LINE L1 5992 6166 0 478 222 0 0 chr6 20178149 20178248 -169101306 + FLAM_A SINE Alu 44 142 0 180 176 0 0 chr6 20178305 20178339 -169101215 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 468 203 80 11 chr6 20178437 20178624 -169100930 + L1ME2 LINE L1 4317 4516 -1630 * 1793 241 65 46 chr6 20178595 20179308 -169100246 + L1ME2 LINE L1 5366 6091 -73 826 311 109 45 chr6 20179327 20180201 -169099353 + L2 LINE L2 2358 3313 0 348 261 176 29 chr6 20180266 20180607 -169098947 - L1ME4a LINE L1 -4 6117 5727 431 216 86 35 chr6 20180607 20180723 -169098831 + MIR SINE MIR 127 248 -14 361 153 222 0 chr6 20181845 20181917 -169097637 - MER3 DNA MER1_type -108 101 14 33 43 0 0 chr6 20182259 20182306 -169097248 + AT_rich Low_complexity Low_complexity 1 47 0 348 24 0 0 chr6 20183094 20183135 -169096419 + (TAA)n Simple_repeat Simple_repeat 2 42 0 521 229 92 37 chr6 20183561 20183779 -169095775 - L1MC5 LINE L1 -36 7925 7696 425 233 111 33 chr6 20183792 20183972 -169095582 + L1MC5 LINE L1 7325 7518 -443 282 64 0 43 chr6 20184004 20184051 -169095503 + L1MC5 LINE L1 7603 7647 -314 264 59 0 0 chr6 20184298 20184332 -169095222 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 721 235 105 0 chr6 20185213 20185375 -169094179 - MER58A DNA MER1_type -35 189 11 2300 107 3 0 chr6 20185500 20185810 -169093744 - AluSp SINE Alu -2 311 1 277 217 0 0 chr6 20185826 20185872 -169093682 - L2 LINE L2 -27 3245 3200 182 338 14 0 chr6 20186242 20186313 -169093241 - L2 LINE L2 -527 2787 2716 1527 268 42 28 chr6 20187950 20188421 -169091133 - MER45C DNA AcHobo 0 953 476 946 213 99 116 chr6 20188422 20188855 -169090699 + LTR16A1 LTR ERVL 32 457 0 346 326 70 35 chr6 20188871 20189043 -169090511 - L2 LINE L2 -213 3100 2923 1774 228 45 45 chr6 20189085 20189554 -169090000 + MLT1D LTR MaLR 37 505 0 2619 277 106 25 chr6 20189554 20189603 -169089951 - L2 LINE L2 -378 2936 2892 2541 94 3 25 chr6 20189603 20189966 -169089588 - THE1A LTR MaLR 0 355 1 2619 277 106 25 chr6 20189966 20190994 -169088560 - L2 LINE L2 -422 2892 1772 1775 168 20 0 chr6 20190994 20191298 -169088256 - MLT2D LTR ERVL -104 310 1 35 24 0 0 chr6 20191321 20191363 -169088191 + AT_rich Low_complexity Low_complexity 1 42 0 6903 22 1 1 chr6 20191370 20192207 -169087347 - L1PA3 LINE L1 0 6155 5333 226 245 0 0 chr6 20192615 20192668 -169086886 + MLT1K LTR MaLR 524 576 -12 780 265 60 95 chr6 20192776 20193377 -169086177 + MLT1G1 LTR MaLR 16 595 0 910 170 116 76 chr6 20193861 20194151 -169085403 - L1M4 LINE L1 -650 5524 5216 515 292 119 31 chr6 20195019 20195245 -169084309 - L3 LINE CR1 -6 1571 1326 2159 87 3 7 chr6 20195555 20195842 -169083712 - AluSc SINE Alu 0 309 24 364 274 118 0 chr6 20197331 20197433 -169082121 - L2 LINE L2 0 3272 3159 447 238 30 0 chr6 20198104 20198205 -169081349 + L2 LINE L2 3169 3272 0 663 0 0 0 chr6 20198422 20198494 -169081060 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 856 150 232 36 chr6 20198511 20198731 -169080823 + AluJb SINE Alu 37 299 -13 1624 185 73 15 chr6 20198945 20199274 -169080280 + MER7A DNA MER2_type 1 346 0 338 325 8 15 chr6 20199872 20200003 -169079551 + MIR SINE MIR 31 159 -65 1380 207 51 85 chr6 20200012 20200485 -169079069 + MLT1C LTR MaLR 1 457 -10 225 214 0 0 chr6 20201314 20201356 -169078198 + (TA)n Simple_repeat Simple_repeat 1 42 0 493 288 68 18 chr6 20201459 20201622 -169077932 - MIR3 SINE MIR -23 185 15 283 313 0 0 chr6 20201666 20201746 -169077808 + MIR SINE MIR 73 152 -110 256 376 66 55 chr6 20201862 20202133 -169077421 + L2 LINE L2 2997 3270 -2 2478 59 3 0 chr6 20203453 20203759 -169075795 - AluY SINE Alu -4 307 1 32 0 0 0 chr6 20206271 20206303 -169073251 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 20206355 20206376 -169073178 + AT_rich Low_complexity Low_complexity 1 21 0 341 332 53 16 chr6 20206397 20206587 -169072967 + MIR3 SINE MIR 11 207 -1 875 204 36 45 chr6 20208965 20209186 -169070368 - MER20 DNA MER1_type 0 219 1 1198 50 29 19 chr6 20209980 20210418 -169069136 + (TTTC)n Simple_repeat Simple_repeat 1 616 0 261 0 0 0 chr6 20210418 20210447 -169069107 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2141 89 4 7 chr6 20210697 20210978 -169068576 + AluSp SINE Alu 1 280 -33 417 20 0 0 chr6 20210980 20211030 -169068524 + (CA)n Simple_repeat Simple_repeat 1 50 0 3059 214 39 55 chr6 20211802 20212731 -169066823 - L1MC4 LINE L1 0 8042 7129 871 237 43 91 chr6 20212732 20213024 -169066530 + L1MC4 LINE L1 6752 7028 -967 2403 98 0 0 chr6 20213024 20213351 -169066203 + L1PA11 LINE L1 5846 6172 -2 871 237 43 91 chr6 20213351 20213387 -169066167 + L1MC4 LINE L1 7028 7064 -931 227 20 61 41 chr6 20213390 20213439 -169066115 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 843 244 26 8 chr6 20213958 20214192 -169065362 - Zaphod DNA AcHobo -46 3985 3748 500 288 11 37 chr6 20214190 20214381 -169065173 - LTR16C LTR ERVL -14 477 292 * 22 70 0 0 chr6 20214798 20214841 -169064713 + AT_rich Low_complexity Low_complexity 1 43 0 336 224 101 41 chr6 20214862 20215130 -169064424 - Zaphod DNA AcHobo -3067 964 681 1847 218 49 14 chr6 20215131 20215576 -169063978 - L1MD3 LINE L1 -44 7951 7491 349 214 0 29 chr6 20215608 20215678 -169063876 - L1MD3 LINE L1 -589 7406 7339 4617 170 20 14 chr6 20215703 20215949 -169063605 - L1PB4 LINE L1 -3 6153 5910 2082 132 26 34 chr6 20215949 20216327 -169063227 - THE1C LTR MaLR 0 375 1 4617 170 20 14 chr6 20216327 20216975 -169062579 - L1PB4 LINE L1 -246 5910 5254 5577 234 35 21 chr6 20217006 20219431 -169060123 - L1PBb LINE L1 -2955 3894 1336 296 287 0 0 chr6 20219421 20219508 -169060046 - L1PBb LINE L1 -5290 1559 1473 * 311 333 19 38 chr6 20219898 20220057 -169059497 - L1PBb LINE L1 -5884 966 811 1101 258 39 9 chr6 20220080 20220413 -169059141 + L1ME LINE L1 5405 5747 -415 505 349 81 14 chr6 20220431 20220801 -169058753 - L2 LINE L2 -786 2528 2134 658 290 43 73 chr6 20220879 20221095 -169058459 - L2 LINE L2 -24 3289 3083 3639 152 36 12 chr6 20221095 20221780 -169057774 - L1MB3 LINE L1 -1 6182 5481 658 290 43 73 chr6 20221780 20221866 -169057688 - L2 LINE L2 -230 3083 2996 375 329 123 47 chr6 20221880 20222398 -169057156 - L2 LINE L2 -1234 2080 1480 2448 144 62 0 chr6 20222398 20222801 -169056753 - MSTA LTR MaLR 0 428 1 375 329 123 47 chr6 20222801 20223069 -169056485 - L2 LINE L2 -1834 1480 1234 1939 157 44 36 chr6 20224562 20224925 -169054629 - MER47A DNA MER2_type 0 366 1 4093 179 55 15 chr6 20225012 20225880 -169053674 - L1MC3 LINE L1 0 7785 6857 2601 142 12 23 chr6 20225880 20226311 -169053243 + MSTB LTR MaLR 1 426 0 4093 179 55 15 chr6 20226311 20226389 -169053165 - L1MC3 LINE L1 -928 6857 6784 1479 168 26 16 chr6 20226541 20226844 -169052710 + L1MC1 LINE L1 6010 6315 -18 954 215 23 27 chr6 20228176 20228395 -169051159 - MER20 DNA MER1_type -1 218 1 31 26 0 0 chr6 20228783 20228821 -169050733 + AT_rich Low_complexity Low_complexity 1 38 0 749 231 193 6 chr6 20228882 20229198 -169050356 - L1M4 LINE L1 -539 5579 5205 1668 161 77 9 chr6 20229203 20229539 -169050015 - L1MB2 LINE L1 -11 6160 5802 13166 182 10 8 chr6 20229539 20230190 -169049364 + L1PB1 LINE L1 2451 3100 -3051 2448 70 3 0 chr6 20230190 20230491 -169049063 + AluY SINE Alu 1 302 -9 13166 182 10 8 chr6 20230491 20231802 -169047752 + L1PB1 LINE L1 3100 4408 -1743 369 0 0 0 chr6 20231802 20231843 -169047711 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 13166 182 10 8 chr6 20231843 20232419 -169047135 + L1PB1 LINE L1 4408 4982 -1169 2317 112 0 0 chr6 20232419 20232723 -169046831 + AluSc SINE Alu 1 304 -5 13166 182 10 8 chr6 20232723 20233882 -169045672 + L1PB1 LINE L1 4982 6151 0 21 71 0 0 chr6 20233882 20233924 -169045630 + AT_rich Low_complexity Low_complexity 1 42 0 1444 174 15 15 chr6 20233928 20234198 -169045356 - L1MB2 LINE L1 -370 5813 5544 1072 230 92 25 chr6 20234199 20234357 -169045197 - L1M4 LINE L1 -860 5220 5074 2065 84 7 31 chr6 20234357 20234643 -169044911 - AluY SINE Alu -5 306 28 1072 230 92 25 chr6 20234643 20234919 -169044635 - L1M4 LINE L1 -1006 5074 4757 7526 96 4 20 chr6 20234923 20235998 -169043556 + MER11C LTR ERVK 1 1057 -14 991 33 8 0 chr6 20236024 20236146 -169043408 - HERVK11 LTR ERVK -1522 6431 6309 1361 224 73 19 chr6 20236147 20236625 -169042929 - L1M4 LINE L1 -1325 4755 4252 2477 129 12 37 chr6 20236631 20237131 -169042423 - L1MA8 LINE L1 -2 6289 5823 1527 49 0 0 chr6 20237131 20237316 -169042238 - L1PA3 LINE L1 -3 6152 5968 2477 129 12 37 chr6 20237316 20237549 -169042005 - L1MA8 LINE L1 -468 5823 5586 * 3995 250 105 36 chr6 20237546 20238192 -169041362 - L1M4 LINE L1 -1820 4260 3660 1578 159 0 86 chr6 20238192 20238549 -169041005 - AluSx SINE Alu 0 312 1 3995 250 105 36 chr6 20238549 20239877 -169039677 - L1M4 LINE L1 -2420 3660 2150 714 299 77 22 chr6 20239903 20240539 -169039015 - L1M4 LINE L1 -4048 2032 1362 911 259 101 29 chr6 20240586 20241341 -169038213 - L1ME LINE L1 -4820 1260 465 301 333 30 61 chr6 20242067 20242265 -169037289 - L1ME LINE L1 -5877 193 2 22 35 0 0 chr6 20242353 20242382 -169037172 + AT_rich Low_complexity Low_complexity 1 29 0 180 184 0 0 chr6 20242382 20242431 -169037123 + (CAT)n Simple_repeat Simple_repeat 1 49 0 1293 276 78 18 chr6 20242675 20243294 -169036260 + MER20B DNA MER1_type 64 719 -64 2403 104 97 32 chr6 20243937 20243972 -169035582 + MSTA LTR MaLR 1 32 -396 2661 138 78 6 chr6 20243972 20244449 -169035105 - MER9 LTR ERVK 0 511 1 2403 104 97 32 chr6 20244449 20244815 -169034739 + MSTA LTR MaLR 32 428 0 182 136 23 0 chr6 20246157 20246201 -169033353 + T-rich Low_complexity Low_complexity 2 46 0 776 125 28 23 chr6 20247297 20247473 -169032081 + CT-rich Low_complexity Low_complexity 3 179 0 736 272 60 19 chr6 20247779 20248147 -169031407 - L1ME LINE L1 -436 5734 5352 6190 149 77 15 chr6 20248260 20249410 -169030144 + Tigger3b DNA MER2_type 2 1222 -9 260 158 18 0 chr6 20249457 20249514 -169030040 + CT-rich Low_complexity Low_complexity 3 60 0 254 264 80 8 chr6 20249566 20249691 -169029863 - L1ME LINE L1 -2074 4072 3939 2598 102 27 22 chr6 20249691 20250093 -169029461 + MLT2A1 LTR ERVL 1 404 -40 729 74 0 80 chr6 20250098 20250963 -169028591 + (TA)n Simple_repeat Simple_repeat 1 795 0 239 97 28 28 chr6 20251013 20251085 -169028469 + (TA)n Simple_repeat Simple_repeat 2 73 0 372 94 0 0 chr6 20251110 20251163 -169028391 + MLT2A1 LTR ERVL 392 444 0 475 304 105 25 chr6 20251247 20251346 -169028208 - L1ME LINE L1 -639 5525 5435 2151 131 0 0 chr6 20251346 20251651 -169027903 - AluSq SINE Alu -8 305 1 475 304 105 25 chr6 20251651 20252430 -169027124 - L1ME LINE L1 -729 5435 4565 198 0 0 0 chr6 20252701 20252723 -169026831 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 432 266 128 35 chr6 20252742 20252968 -169026586 + L1MC4a LINE L1 1456 1702 -4840 893 297 111 6 chr6 20252982 20253590 -169025964 + L1MC4a LINE L1 4214 4899 -1745 304 287 84 49 chr6 20253598 20253741 -169025813 + L1MC4a LINE L1 6217 6364 -1942 2337 147 76 0 chr6 20253826 20254220 -169025334 + MSTA LTR MaLR 1 424 -4 306 329 204 0 chr6 20254760 20254897 -169024657 - MER5A DNA MER1_type -21 168 4 1032 219 71 115 chr6 20254932 20255392 -169024162 - MER66A LTR ERV1 -10 520 96 982 199 0 0 chr6 20256655 20256811 -169022743 - FAM SINE Alu -19 156 1 252 376 43 0 chr6 20257524 20257686 -169021868 + MER117 DNA MER1_type 7 175 -22 3497 141 6 0 chr6 20257750 20258274 -169021280 + MER1A DNA MER1_type 1 527 0 800 163 0 0 chr6 20258304 20258427 -169021127 + FLAM_C SINE Alu 1 123 -20 234 151 38 0 chr6 20258427 20258480 -169021074 + (TA)n Simple_repeat Simple_repeat 2 56 0 713 183 7 14 chr6 20258492 20258634 -169020920 + AluJb SINE Alu 142 282 -30 411 312 89 32 chr6 20259059 20259306 -169020248 + MIR SINE MIR 2 262 0 280 295 0 71 chr6 20259462 20259574 -169019980 + MER5A DNA MER1_type 46 149 -40 262 181 14 14 chr6 20260096 20260168 -169019386 + CT-rich Low_complexity Low_complexity 5 76 0 2043 126 36 0 chr6 20260172 20260474 -169019080 - AluSq SINE Alu 0 313 1 1940 136 61 0 chr6 20261187 20261481 -169018073 - AluSx SINE Alu 0 312 1 360 325 70 24 chr6 20261585 20261883 -169017671 + L1ME4a LINE L1 5265 5576 -2232 330 143 0 0 chr6 20262830 20262893 -169016661 + (GA)n Simple_repeat Simple_repeat 2 64 0 23 68 0 0 chr6 20262977 20263021 -169016533 + AT_rich Low_complexity Low_complexity 1 44 0 1171 200 23 111 chr6 20263454 20263849 -169015705 - MLT1A1 LTR MaLR -3 362 3 264 273 119 6 chr6 20263877 20264053 -169015501 + L1ME4a LINE L1 5758 5953 -168 318 264 50 36 chr6 20264054 20264194 -169015360 + L1ME4a LINE L1 5978 6119 -2 311 270 0 102 chr6 20264222 20264359 -169015195 - MIR SINE MIR -24 238 116 1567 161 0 8 chr6 20264790 20265044 -169014510 - AluJb SINE Alu -15 297 46 408 270 68 55 chr6 20266886 20267049 -169012505 + MER91A DNA MER1_type 1 165 -31 236 298 0 35 chr6 20267052 20267109 -169012445 + MER91A DNA MER1_type 136 190 0 1067 343 64 5 chr6 20267752 20268192 -169011362 + LTR33 LTR ERVL 33 498 -23 3499 69 7 4 chr6 20269810 20270271 -169009283 + L1PA8 LINE L1 5709 6170 -2 342 368 118 35 chr6 20271655 20272003 -169007551 + L2 LINE L2 2841 3217 -55 2080 144 119 16 chr6 20272042 20272430 -169007124 + MSTA LTR MaLR 1 428 0 13485 17 0 0 chr6 20272881 20275229 -169004325 - L1HS LINE L1 -2 6153 3805 1646 30 0 0 chr6 20275226 20275424 -169004130 + L1HS LINE L1 3607 3804 -2342 * 2241 234 36 32 chr6 20276729 20277343 -169002211 - MER77 LTR ERV1 -4 601 79 213 39 0 0 chr6 20277540 20277566 -169001988 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr6 20277706 20277734 -169001820 + AT_rich Low_complexity Low_complexity 1 28 0 4812 214 73 22 chr6 20278633 20279973 -168999581 + Charlie1a DNA MER1_type 1 1409 -46 231 36 0 0 chr6 20280114 20280142 -168999412 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1414 215 8 4 chr6 20280149 20280409 -168999145 - AluJb SINE Alu -51 261 1 209 222 22 0 chr6 20281241 20281286 -168998268 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 291 71 0 0 chr6 20282082 20282124 -168997430 + (CA)n Simple_repeat Simple_repeat 2 43 0 15497 156 19 9 chr6 20285191 20290352 -168989202 - L1MA3 LINE L1 0 7724 2567 236 333 65 0 chr6 20290560 20290683 -168988871 - L1MC5 LINE L1 -519 7442 7312 3831 23 0 0 chr6 20290901 20291344 -168988210 - L1PA4 LINE L1 -59 6096 5654 416 65 0 0 chr6 20291344 20291405 -168988149 + L1PA3 LINE L1 6094 6155 0 462 36 0 0 chr6 20291780 20291836 -168987718 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 252 213 0 0 chr6 20291972 20292033 -168987521 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 515 43 14 0 chr6 20292063 20292133 -168987421 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1253 165 187 31 chr6 20292746 20293067 -168986487 - MLT1A2 LTR MaLR 0 374 4 679 103 10 0 chr6 20297305 20297402 -168982152 + MSTB1 LTR MaLR 335 432 0 314 235 31 10 chr6 20297495 20297593 -168981961 + MER103 DNA DNA 66 165 -1 290 288 182 24 chr6 20298324 20298494 -168981060 + MIR SINE MIR 45 241 -21 2694 98 3 5 chr6 20298530 20298906 -168980648 + THE1C LTR MaLR 1 375 0 198 0 0 0 chr6 20299516 20299538 -168980016 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 420 55 0 0 chr6 20299537 20299592 -168979962 + (TG)n Simple_repeat Simple_repeat 2 56 0 193 148 19 19 chr6 20299651 20299705 -168979849 + CT-rich Low_complexity Low_complexity 2 55 0 350 272 82 84 chr6 20300907 20301240 -168978314 - MLT1J1 LTR MaLR -71 375 20 298 298 12 0 chr6 20301765 20301849 -168977705 + L1ME LINE L1 5523 5607 -514 393 86 0 0 chr6 20302156 20302214 -168977340 + (T)n Simple_repeat Simple_repeat 1 58 0 2034 103 10 48 chr6 20302293 20302605 -168976949 - AluSq SINE Alu -13 300 1 2137 122 0 0 chr6 20304475 20304778 -168974776 - AluSx SINE Alu -5 307 5 215 343 0 0 chr6 20304923 20304990 -168974564 + L2 LINE L2 3247 3313 0 526 328 15 30 chr6 20305368 20305566 -168973988 - MIR SINE MIR -65 197 3 1246 149 61 105 chr6 20307450 20307745 -168971809 + AluJo SINE Alu 1 282 -30 216 319 112 35 chr6 20308597 20308713 -168970841 - MIR SINE MIR -46 216 92 282 375 65 5 chr6 20308912 20309096 -168970458 - L2 LINE L2 -209 3063 2869 584 286 50 14 chr6 20309096 20309316 -168970238 - MER102b DNA MER1_type -1 340 113 424 209 27 36 chr6 20309502 20309612 -168969942 + MIR3 SINE MIR 77 185 -23 1435 261 38 92 chr6 20309713 20310787 -168968767 + L1MEc LINE L1 2147 3121 -3094 3919 153 24 23 chr6 20310788 20311183 -168968371 - L1 LINE L1 -2242 3904 3506 1324 112 36 83 chr6 20311183 20311376 -168968178 - L1MA2 LINE L1 -1 6303 6125 1839 158 0 20 chr6 20311376 20311680 -168967874 - AluSx SINE Alu -10 302 5 1324 112 36 83 chr6 20311680 20311762 -168967792 - L1MA2 LINE L1 -179 6125 6041 3919 153 24 23 chr6 20311762 20312144 -168967410 - L1 LINE L1 -2640 3506 3126 3510 187 16 50 chr6 20312138 20312925 -168966629 + L1PA15 LINE L1 5400 6160 -5 * 360 0 0 0 chr6 20312947 20312987 -168966567 + (TA)n Simple_repeat Simple_repeat 1 40 0 351 0 0 0 chr6 20312988 20313027 -168966527 + (CA)n Simple_repeat Simple_repeat 2 40 0 247 184 0 0 chr6 20313064 20313102 -168966452 + Alu SINE Alu 1 38 -261 523 144 62 0 chr6 20313104 20313201 -168966353 + AluY SINE Alu 207 309 -2 2972 126 13 2 chr6 20313203 20313678 -168965876 + L1MA6 LINE L1 5821 6300 0 1299 268 78 12 chr6 20313711 20314468 -168965086 + L1MC/D LINE L1 4872 5677 -489 447 192 8 128 chr6 20314474 20314599 -168964955 - Tigger3(Golem) DNA MER2_type 0 3029 2920 257 239 127 0 chr6 20314706 20314720 -168964834 - Tigger3(Golem) DNA MER2_type -522 80 69 2168 34 8 0 chr6 20314720 20314987 -168964567 - L1PA4 LINE L1 -3 6152 5884 257 239 127 0 chr6 20314987 20315043 -168964511 - Tigger3(Golem) DNA MER2_type -533 69 1 451 221 71 9 chr6 20315044 20315157 -168964397 + L1MC/D LINE L1 5689 5808 -356 27 0 0 0 chr6 20416026 20416053 -168863501 + AT_rich Low_complexity Low_complexity 1 27 0 2223 133 41 21 chr6 20416182 20416618 -168862936 - LTR7 LTR ERV1 -5 445 1 248 316 164 6 chr6 20416721 20416892 -168862662 + MIR SINE MIR 9 206 -56 194 298 85 0 chr6 20416940 20417034 -168862520 + MIR SINE MIR 154 255 -7 338 320 44 61 chr6 20417822 20418050 -168861504 - L2 LINE L2 -1021 2293 2070 819 168 0 40 chr6 20418505 20418654 -168860900 - FLAM_C SINE Alu 0 143 1 1394 243 75 33 chr6 20418661 20419161 -168860393 - L1MCc LINE L1 -4028 3094 2362 2108 86 4 11 chr6 20419161 20419440 -168860114 - AluSg SINE Alu -16 294 18 1394 243 75 33 chr6 20419440 20419669 -168859885 - L1MCc LINE L1 -4760 2362 2144 537 285 50 26 chr6 20419670 20420171 -168859383 - L1MCc LINE L1 -4889 1534 1130 573 88 0 0 chr6 20421927 20422007 -168857547 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 2212 122 3 6 chr6 20422445 20422757 -168856797 - AluSq SINE Alu -2 311 1 720 156 0 33 chr6 20423572 20423694 -168855860 + FRAM SINE Alu 45 162 -14 248 254 0 0 chr6 20423715 20423778 -168855776 + L1MC/D LINE L1 5837 5899 -1909 2198 132 0 0 chr6 20423998 20424301 -168855253 - AluSx SINE Alu -9 303 1 263 226 0 48 chr6 20424438 20424500 -168855054 - L2 LINE L2 -9 3304 3246 455 288 120 20 chr6 20424605 20424842 -168854712 + MIR SINE MIR 1 262 0 531 222 106 48 chr6 20426849 20427038 -168852516 + MIR SINE MIR 63 262 0 2552 52 0 0 chr6 20427110 20427416 -168852138 - AluY SINE Alu -5 306 1 1545 178 44 30 chr6 20428100 20428398 -168851156 - AluJb SINE Alu -8 304 3 2173 119 9 25 chr6 20428558 20428876 -168850678 - AluSq SINE Alu 0 313 1 308 65 43 0 chr6 20428933 20428979 -168850575 - LTR54 LTR ERV1 -61 449 402 3108 120 29 4 chr6 20429026 20429516 -168850038 - L1PA16 LINE L1 -17 6149 5648 493 278 146 9 chr6 20429516 20429728 -168849826 - L1MC/D LINE L1 -2055 5753 5513 872 291 20 12 chr6 20429829 20430080 -168849474 - MIR SINE MIR -9 253 1 2220 137 12 9 chr6 20430168 20430504 -168849050 + MER1B DNA MER1_type 1 337 0 426 306 89 20 chr6 20430560 20430808 -168848746 - L1MC/D LINE L1 -946 5200 4936 12167 165 12 8 chr6 20431028 20434143 -168845411 - L1PA13 LINE L1 -1 6162 3025 1814 160 17 7 chr6 20434143 20434430 -168845124 - AluJb SINE Alu -20 292 3 12167 165 12 8 chr6 20434430 20435021 -168844533 - L1PA13 LINE L1 -3138 3025 2438 746 110 110 17 chr6 20435281 20435399 -168844155 + FLAM_C SINE Alu 1 129 -4 1042 191 4 52 chr6 20435562 20435792 -168843762 + MER20 DNA MER1_type 1 219 0 791 182 0 0 chr6 20435800 20435921 -168843633 - FLAM_A SINE Alu -12 121 1 2800 13 0 0 chr6 20436722 20437028 -168842526 + AluYa5 SINE Alu 1 306 -5 2838 10 0 0 chr6 20438213 20438523 -168841031 + AluYa5 SINE Alu 1 310 -1 189 268 0 0 chr6 20440104 20440145 -168839409 - L2 LINE L2 -1 3271 3231 346 319 76 19 chr6 20440878 20441035 -168838519 - MIR SINE MIR -8 254 89 595 157 0 0 chr6 20441044 20441146 -168838408 + AluSg/x SINE Alu 207 308 -2 289 338 112 39 chr6 20441343 20441825 -168837729 - L2 LINE L2 -510 2804 2288 2018 151 0 0 chr6 20441884 20442183 -168837371 - AluJb SINE Alu -13 299 1 290 296 117 50 chr6 20442928 20443168 -168836386 - L2 LINE L2 -45 3268 3013 511 238 204 83 chr6 20443315 20443426 -168836128 - L2 LINE L2 -2 3311 3215 198 103 0 0 chr6 20443426 20443455 -168836099 + (TG)n Simple_repeat Simple_repeat 1 29 0 511 238 204 83 chr6 20443455 20443864 -168835690 - L2 LINE L2 -98 3215 2682 2331 82 0 20 chr6 20443864 20444168 -168835386 - AluSg1 SINE Alu -11 298 1 511 238 204 83 chr6 20444168 20444308 -168835246 - L2 LINE L2 -631 2682 2560 442 219 207 39 chr6 20444350 20444606 -168834948 - L2 LINE L2 0 3313 3015 2188 110 13 0 chr6 20445950 20446249 -168833305 + AluSx SINE Alu 1 303 -9 257 250 113 0 chr6 20446580 20446660 -168832894 + MIR SINE MIR 120 208 -54 195 42 0 0 chr6 20446983 20447007 -168832547 + (T)n Simple_repeat Simple_repeat 1 24 0 819 191 0 0 chr6 20447018 20447149 -168832405 + FLAM_A SINE Alu 1 131 -2 2112 132 0 13 chr6 20447653 20447956 -168831598 + AluSx SINE Alu 1 299 -13 448 338 59 34 chr6 20448563 20448800 -168830754 - MIR SINE MIR -8 254 12 1453 193 3 24 chr6 20448886 20449176 -168830378 - AluJo SINE Alu -3 309 26 529 211 0 0 chr6 20449176 20449271 -168830283 - FLAM_A SINE Alu -47 95 1 349 223 90 147 chr6 20449868 20450079 -168829475 + MIR SINE MIR 64 262 0 22 0 0 0 chr6 20450963 20450985 -168828569 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 20451208 20451228 -168828326 + (CACCC)n Simple_repeat Simple_repeat 1 20 0 268 240 27 0 chr6 20451403 20451478 -168828076 + L3b LINE CR1 1124 1200 -383 357 229 110 55 chr6 20451551 20451660 -168827894 + MIR SINE MIR 33 147 -61 231 209 0 0 chr6 20451750 20451793 -168827761 - L2 LINE L2 -4 3309 3267 296 300 127 0 chr6 20451875 20451985 -168827569 + L2 LINE L2 3149 3272 0 1826 146 27 23 chr6 20452325 20452626 -168826928 + AluJo SINE Alu 6 307 -5 291 140 0 0 chr6 20453834 20453884 -168825670 + (T)n Simple_repeat Simple_repeat 1 50 0 1951 168 24 5 chr6 20455048 20455418 -168824136 - L1PB4 LINE L1 0 6156 5780 195 42 0 0 chr6 20455462 20455486 -168824068 + (TG)n Simple_repeat Simple_repeat 2 25 0 3130 115 13 6 chr6 20455489 20456011 -168823543 - L1PB4 LINE L1 -371 5785 5260 2099 160 3 0 chr6 20457225 20457573 -168821981 - AluSx SINE Alu 0 349 1 2349 109 0 0 chr6 20457967 20458271 -168821283 - AluSg SINE Alu -6 304 1 530 301 109 18 chr6 20458396 20458625 -168820929 + MIR SINE MIR 12 261 -1 511 306 124 0 chr6 20460074 20460283 -168819271 - MIR SINE MIR -26 236 2 751 247 30 46 chr6 20461121 20461384 -168818170 - MIR SINE MIR -2 260 2 2127 124 0 0 chr6 20461436 20461744 -168817810 + AluSx SINE Alu 1 308 0 342 317 58 0 chr6 20461952 20462056 -168817498 - L2 LINE L2 -8 3264 3155 209 89 67 0 chr6 20462205 20462250 -168817304 + (TA)n Simple_repeat Simple_repeat 2 49 0 637 262 24 62 chr6 20462367 20462635 -168816919 + MIR SINE MIR 1 259 -3 283 265 59 0 chr6 20463143 20463211 -168816343 + MER91C DNA MER1_type 35 106 -34 347 313 6 38 chr6 20463224 20463384 -168816170 + L2 LINE L2 2828 2982 -290 237 288 106 0 chr6 20463450 20463516 -168816038 + L2 LINE L2 2981 3053 -219 236 226 137 48 chr6 20463690 20463814 -168815740 - HAL1 LINE L1 -78 2429 2295 1968 126 13 33 chr6 20463825 20464126 -168815428 - AluJb SINE Alu -17 295 1 1916 149 41 33 chr6 20464303 20464665 -168814889 + MLT1A1 LTR MaLR 1 365 0 2402 58 6 0 chr6 20465039 20465351 -168814203 - L1PA4 LINE L1 0 6155 5842 478 270 92 126 chr6 20465553 20465781 -168813773 - HAL1 LINE L1 -1011 1496 1262 1048 58 47 6 chr6 20465781 20465952 -168813602 + CT-rich Low_complexity Low_complexity 3 180 0 478 270 92 126 chr6 20465952 20465975 -168813579 - HAL1 LINE L1 -1245 1262 1240 1732 142 25 4 chr6 20465975 20466256 -168813298 - AluSx SINE Alu -25 287 1 478 270 92 126 chr6 20466256 20466711 -168812843 - HAL1 LINE L1 -1267 1240 813 324 0 0 0 chr6 20466998 20467034 -168812520 + (CA)n Simple_repeat Simple_repeat 2 37 0 264 30 0 0 chr6 20467339 20467372 -168812182 + (TG)n Simple_repeat Simple_repeat 1 33 0 759 242 113 17 chr6 20467441 20467672 -168811882 + MIR SINE MIR 10 262 0 199 381 83 32 chr6 20468113 20468391 -168811163 + L3 LINE CR1 1263 1554 -23 392 276 98 37 chr6 20469800 20469963 -168809591 - MIR3 SINE MIR -13 195 23 1127 195 0 19 chr6 20470054 20470269 -168809285 + AluJo SINE Alu 101 311 -1 682 268 63 54 chr6 20571289 20571890 -168707664 + MLT1G1 LTR MaLR 16 590 0 845 170 116 76 chr6 20572374 20572664 -168706890 - L1M4 LINE L1 -650 5524 5216 512 292 119 31 chr6 20573532 20573758 -168705796 - L3 LINE CR1 -6 1571 1326 2180 87 3 7 chr6 20574068 20574355 -168705199 - AluSc SINE Alu 0 309 24 368 274 118 0 chr6 20575844 20575946 -168703608 - L2 LINE L2 0 3272 3159 450 238 30 0 chr6 20576617 20576718 -168702836 + L2 LINE L2 3169 3272 0 669 0 0 0 chr6 20576935 20577007 -168702547 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 876 150 232 36 chr6 20577024 20577244 -168702310 + AluJb SINE Alu 37 299 -13 1606 185 73 15 chr6 20577458 20577787 -168701767 + MER7A DNA MER2_type 1 346 0 334 325 8 15 chr6 20578385 20578516 -168701038 + MIR SINE MIR 31 159 -65 1231 216 42 76 chr6 20578525 20578998 -168700556 + MLT1C LTR MaLR 1 457 -10 225 214 0 0 chr6 20579827 20579869 -168699685 + (TA)n Simple_repeat Simple_repeat 1 42 0 499 288 68 18 chr6 20579972 20580135 -168699419 - MIR3 SINE MIR -23 185 15 281 313 0 0 chr6 20580179 20580259 -168699295 + MIR SINE MIR 73 152 -110 261 376 66 55 chr6 20580375 20580646 -168698908 + L2 LINE L2 2997 3270 -2 2477 59 3 0 chr6 20581966 20582272 -168697282 - AluY SINE Alu -4 307 1 32 0 0 0 chr6 20584784 20584816 -168694738 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 20584868 20584889 -168694665 + AT_rich Low_complexity Low_complexity 1 21 0 347 332 53 16 chr6 20584910 20585100 -168694454 + MIR3 SINE MIR 11 207 -1 862 204 36 45 chr6 20587478 20587699 -168691855 - MER20 DNA MER1_type 0 219 1 1198 50 29 19 chr6 20588493 20588931 -168690623 + (TTTC)n Simple_repeat Simple_repeat 1 616 0 261 0 0 0 chr6 20588931 20588960 -168690594 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2105 89 4 7 chr6 20589210 20589491 -168690063 + AluSp SINE Alu 1 280 -33 417 20 0 0 chr6 20589493 20589543 -168690011 + (CA)n Simple_repeat Simple_repeat 1 50 0 3130 214 39 55 chr6 20590315 20591244 -168688310 - L1MC4 LINE L1 0 8042 7129 881 237 43 91 chr6 20591245 20591537 -168688017 + L1MC4 LINE L1 6752 7028 -967 2384 98 0 0 chr6 20591537 20591864 -168687690 + L1PA11 LINE L1 5846 6172 -2 881 237 43 91 chr6 20591864 20591900 -168687654 + L1MC4 LINE L1 7028 7064 -931 227 20 61 41 chr6 20591903 20591952 -168687602 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 864 244 26 8 chr6 20592471 20592705 -168686849 - Zaphod DNA AcHobo -46 3985 3748 495 288 11 37 chr6 20592703 20592894 -168686660 - LTR16C LTR ERVL -14 477 292 * 22 70 0 0 chr6 20593311 20593354 -168686200 + AT_rich Low_complexity Low_complexity 1 43 0 376 224 101 41 chr6 20593375 20593643 -168685911 - Zaphod DNA AcHobo -3067 964 681 1864 218 49 14 chr6 20593644 20594089 -168685465 - L1MD3 LINE L1 -44 7951 7491 351 214 0 29 chr6 20594121 20594191 -168685363 - L1MD3 LINE L1 -589 7406 7339 4678 169 20 14 chr6 20594216 20594462 -168685092 - L1PB4 LINE L1 -3 6153 5910 2062 132 26 34 chr6 20594462 20594840 -168684714 - THE1C LTR MaLR 0 375 1 4678 169 20 14 chr6 20594840 20595488 -168684066 - L1PB4 LINE L1 -246 5910 5254 5601 240 44 25 chr6 20595519 20598253 -168681301 - L1PBb LINE L1 -2955 3248 355 303 333 19 38 chr6 20598408 20598567 -168680987 - L1PBb LINE L1 -5884 320 165 1123 258 39 9 chr6 20598590 20598923 -168680631 + L1ME LINE L1 5405 5747 -415 508 349 81 14 chr6 20598941 20599311 -168680243 - L2 LINE L2 -786 2528 2134 667 290 43 73 chr6 20599389 20599605 -168679949 - L2 LINE L2 -24 3289 3083 3644 152 36 12 chr6 20599605 20600290 -168679264 - L1MB3 LINE L1 -1 6182 5481 667 290 43 73 chr6 20600290 20600376 -168679178 - L2 LINE L2 -230 3083 2996 387 329 123 47 chr6 20600390 20600908 -168678646 - L2 LINE L2 -1234 2080 1480 2420 144 62 0 chr6 20600908 20601311 -168678243 - MSTA LTR MaLR 0 428 1 387 329 123 47 chr6 20601311 20601579 -168677975 - L2 LINE L2 -1834 1480 1234 1937 157 44 36 chr6 20603072 20603435 -168676119 - MER47A DNA MER2_type 0 366 1 4128 184 55 13 chr6 20603522 20604388 -168675166 - L1MC3 LINE L1 0 7785 6857 2571 142 12 23 chr6 20604388 20604819 -168674735 + MSTB LTR MaLR 1 426 0 4128 184 55 13 chr6 20604819 20604897 -168674657 - L1MC3 LINE L1 -928 6857 6784 1477 168 26 16 chr6 20605049 20605352 -168674202 + L1MC1 LINE L1 6010 6315 -18 943 215 23 27 chr6 20606684 20606903 -168672651 - MER20 DNA MER1_type -1 218 1 31 26 0 0 chr6 20607291 20607329 -168672225 + AT_rich Low_complexity Low_complexity 1 38 0 770 231 193 6 chr6 20607390 20607706 -168671848 - L1M4 LINE L1 -539 5579 5205 1673 161 77 9 chr6 20607711 20608047 -168671507 - L1MB2 LINE L1 -11 6160 5802 13277 183 9 8 chr6 20608047 20608698 -168670856 + L1PB1 LINE L1 2451 3100 -3051 2394 70 3 0 chr6 20608698 20608997 -168670557 + AluY SINE Alu 1 300 -11 13277 183 9 8 chr6 20608997 20610308 -168669246 + L1PB1 LINE L1 3100 4408 -1743 369 0 0 0 chr6 20610308 20610349 -168669205 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 13277 183 9 8 chr6 20610349 20610925 -168668629 + L1PB1 LINE L1 4408 4982 -1169 2291 112 0 0 chr6 20610925 20611229 -168668325 + AluSc SINE Alu 1 304 -5 13277 183 9 8 chr6 20611229 20612388 -168667166 + L1PB1 LINE L1 4982 6151 0 21 71 0 0 chr6 20612388 20612430 -168667124 + AT_rich Low_complexity Low_complexity 1 42 0 1456 174 15 15 chr6 20612434 20612704 -168666850 - L1MB2 LINE L1 -370 5813 5544 1099 230 92 25 chr6 20612705 20612863 -168666691 - L1M4 LINE L1 -860 5220 5074 2039 84 7 31 chr6 20612863 20613149 -168666405 - AluY SINE Alu -5 306 28 1099 230 92 25 chr6 20613149 20613425 -168666129 - L1M4 LINE L1 -1006 5074 4757 7497 96 4 20 chr6 20613429 20614504 -168665050 + MER11C LTR ERVK 1 1057 -14 868 29 0 0 chr6 20614530 20614633 -168664921 - HERVK11 LTR ERVK -1522 6431 6329 4040 221 83 120 chr6 20614633 20615137 -168664417 - L1M4 LINE L1 -1307 4773 4252 2493 138 19 47 chr6 20615137 20615624 -168663930 - L1MA8 LINE L1 -2 6289 5817 4040 221 83 120 chr6 20615624 20615637 -168663917 - L1M4 LINE L1 -1828 4252 4240 1521 49 0 0 chr6 20615637 20615822 -168663732 - L1PA3 LINE L1 -3 6152 5968 4040 221 83 120 chr6 20615822 20616698 -168662856 - L1M4 LINE L1 -1840 4240 3333 1548 159 0 86 chr6 20616698 20617055 -168662499 - AluSx SINE Alu 0 312 1 4040 221 83 120 chr6 20617055 20618383 -168661171 - L1M4 LINE L1 -2747 3333 2150 776 299 77 22 chr6 20618409 20619045 -168660509 - L1M4 LINE L1 -4048 2032 1362 962 259 101 29 chr6 20619092 20619847 -168659707 - L1ME LINE L1 -4820 1260 465 306 333 30 61 chr6 20620573 20620771 -168658783 - L1ME LINE L1 -5877 193 2 22 35 0 0 chr6 20620859 20620888 -168658666 + AT_rich Low_complexity Low_complexity 1 29 0 180 184 0 0 chr6 20620888 20620937 -168658617 + (CAT)n Simple_repeat Simple_repeat 1 49 0 1347 276 78 18 chr6 20621181 20621800 -168657754 + MER20B DNA MER1_type 64 719 -64 2379 104 97 32 chr6 20622443 20622478 -168657076 + MSTA LTR MaLR 1 32 -396 2627 138 78 6 chr6 20622478 20622955 -168656599 - MER9 LTR ERVK 0 511 1 2379 104 97 32 chr6 20622955 20623321 -168656233 + MSTA LTR MaLR 32 428 0 182 136 23 0 chr6 20624663 20624707 -168654847 + T-rich Low_complexity Low_complexity 2 46 0 776 125 28 23 chr6 20625803 20625979 -168653575 + CT-rich Low_complexity Low_complexity 3 179 0 761 272 60 19 chr6 20626285 20626653 -168652901 - L1ME LINE L1 -436 5734 5352 6239 149 77 15 chr6 20626766 20627916 -168651638 + Tigger3b DNA MER2_type 2 1222 -9 260 158 18 0 chr6 20627963 20628020 -168651534 + CT-rich Low_complexity Low_complexity 3 60 0 260 264 80 8 chr6 20628072 20628197 -168651357 - L1ME LINE L1 -2074 4072 3939 2666 99 22 22 chr6 20628197 20628601 -168650953 + MLT2A1 LTR ERVL 1 404 -40 413 71 0 101 chr6 20628606 20628804 -168650750 + (TA)n Simple_repeat Simple_repeat 2 179 0 729 74 0 74 chr6 20628838 20629471 -168650083 + (TA)n Simple_repeat Simple_repeat 1 586 0 239 97 28 28 chr6 20629521 20629593 -168649961 + (TA)n Simple_repeat Simple_repeat 2 73 0 375 94 0 0 chr6 20629618 20629671 -168649883 + MLT2A1 LTR ERVL 392 444 0 546 304 105 25 chr6 20629755 20629854 -168649700 - L1ME LINE L1 -637 5525 5435 2124 131 0 0 chr6 20629854 20630159 -168649395 - AluSq SINE Alu -8 305 1 546 304 105 25 chr6 20630159 20630938 -168648616 - L1ME LINE L1 -727 5435 4565 198 0 0 0 chr6 20631209 20631231 -168648323 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 241 266 128 35 chr6 20631250 20631476 -168648078 + L1MC4a LINE L1 1456 1702 -4840 939 298 101 14 chr6 20631490 20632098 -168647456 + L1MC4a LINE L1 4214 4899 -1745 304 287 84 49 chr6 20632106 20632249 -168647305 + L1MC4a LINE L1 6217 6364 -1942 2314 147 76 0 chr6 20632334 20632728 -168646826 + MSTA LTR MaLR 1 424 -4 303 329 204 0 chr6 20633268 20633405 -168646149 - MER5A DNA MER1_type -21 168 4 1025 232 58 102 chr6 20633440 20633900 -168645654 - MER66A LTR ERV1 -10 520 96 968 199 0 0 chr6 20635163 20635319 -168644235 - FAM SINE Alu -19 156 1 257 376 43 0 chr6 20636032 20636194 -168643360 + MER117 DNA MER1_type 7 175 -22 3497 141 6 0 chr6 20636258 20636782 -168642772 + MER1A DNA MER1_type 1 527 0 800 163 0 0 chr6 20636812 20636935 -168642619 + FLAM_C SINE Alu 1 123 -20 234 151 38 0 chr6 20636935 20636988 -168642566 + (TA)n Simple_repeat Simple_repeat 1 55 0 713 183 7 14 chr6 20637000 20637142 -168642412 + AluJb SINE Alu 142 282 -30 411 312 89 32 chr6 20637567 20637814 -168641740 + MIR SINE MIR 2 262 0 280 295 0 71 chr6 20637970 20638082 -168641472 + MER5A DNA MER1_type 46 149 -40 262 181 14 14 chr6 20638604 20638676 -168640878 + CT-rich Low_complexity Low_complexity 5 76 0 2043 126 36 0 chr6 20638680 20638982 -168640572 - AluSq SINE Alu 0 313 1 1940 136 61 0 chr6 20639695 20639989 -168639565 - AluSx SINE Alu 0 312 1 360 325 70 24 chr6 20640093 20640391 -168639163 + L1ME4a LINE L1 5265 5576 -2232 330 143 0 0 chr6 20641338 20641401 -168638153 + (GA)n Simple_repeat Simple_repeat 2 64 0 23 68 0 0 chr6 20641485 20641529 -168638025 + AT_rich Low_complexity Low_complexity 1 44 0 1171 200 23 111 chr6 20641962 20642357 -168637197 - MLT1A1 LTR MaLR -3 362 3 279 271 113 6 chr6 20642385 20642562 -168636992 + L1ME4a LINE L1 5758 5953 -168 318 264 50 36 chr6 20642563 20642703 -168636851 + L1ME4a LINE L1 5978 6119 -2 311 270 0 102 chr6 20642731 20642868 -168636686 - MIR SINE MIR -24 238 116 1567 161 0 8 chr6 20643299 20643553 -168636001 - AluJb SINE Alu -15 297 46 408 270 68 55 chr6 20645395 20645558 -168633996 + MER91A DNA MER1_type 1 165 -31 236 298 0 35 chr6 20645561 20645618 -168633936 + MER91A DNA MER1_type 136 190 0 1067 343 64 5 chr6 20646261 20646701 -168632853 + LTR33 LTR ERVL 33 498 -23 3499 69 7 4 chr6 20648319 20648780 -168630774 + L1PA8 LINE L1 5709 6170 -2 342 368 118 35 chr6 20650164 20650512 -168629042 + L2 LINE L2 2841 3217 -55 2080 144 119 16 chr6 20650551 20650939 -168628615 + MSTA LTR MaLR 1 428 0 13485 17 0 0 chr6 20651390 20653738 -168625816 - L1HS LINE L1 -2 6153 3805 1646 30 0 0 chr6 20653735 20653933 -168625621 + L1HS LINE L1 3607 3804 -2342 * 2241 234 36 32 chr6 20655238 20655852 -168623702 - MER77 LTR ERV1 -4 601 79 213 39 0 0 chr6 20656049 20656075 -168623479 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr6 20656215 20656243 -168623311 + AT_rich Low_complexity Low_complexity 1 28 0 4812 214 73 22 chr6 20657141 20658481 -168621073 + Charlie1a DNA MER1_type 1 1409 -46 231 36 0 0 chr6 20658622 20658650 -168620904 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1414 215 8 4 chr6 20658657 20658917 -168620637 - AluJb SINE Alu -51 261 1 209 222 22 0 chr6 20659749 20659794 -168619760 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 291 71 0 0 chr6 20660590 20660632 -168618922 + (CA)n Simple_repeat Simple_repeat 2 43 0 15293 155 20 9 chr6 20663699 20668847 -168610707 - L1MA3 LINE L1 0 7724 2567 228 333 65 0 chr6 20669066 20669189 -168610365 - L1MC5 LINE L1 -519 7442 7312 3851 23 0 0 chr6 20669407 20669850 -168609704 - L1PA4 LINE L1 -59 6096 5654 411 65 0 0 chr6 20669850 20669911 -168609643 + L1PA3 LINE L1 6094 6155 0 462 36 0 0 chr6 20670286 20670342 -168609212 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 252 213 0 0 chr6 20670478 20670539 -168609015 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 515 43 14 0 chr6 20670569 20670639 -168608915 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1270 165 187 31 chr6 20671252 20671573 -168607981 - MLT1A2 LTR MaLR 0 374 4 677 103 10 0 chr6 20675811 20675908 -168603646 + MSTB1 LTR MaLR 335 432 0 316 235 31 10 chr6 20676001 20676099 -168603455 + MER103 DNA DNA 66 165 -1 293 288 182 24 chr6 20676830 20677000 -168602554 + MIR SINE MIR 45 241 -21 2716 98 3 5 chr6 20677036 20677412 -168602142 + THE1C LTR MaLR 1 375 0 198 0 0 0 chr6 20678022 20678044 -168601510 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 420 55 0 0 chr6 20678043 20678098 -168601456 + (TG)n Simple_repeat Simple_repeat 2 56 0 193 148 19 19 chr6 20678157 20678211 -168601343 + CT-rich Low_complexity Low_complexity 2 55 0 353 272 82 84 chr6 20679413 20679746 -168599808 - MLT1J1 LTR MaLR -71 375 20 293 298 12 0 chr6 20680271 20680355 -168599199 + L1ME LINE L1 5523 5607 -514 393 86 0 0 chr6 20680662 20680720 -168598834 + (T)n Simple_repeat Simple_repeat 1 58 0 2066 103 10 48 chr6 20680799 20681111 -168598443 - AluSq SINE Alu -13 300 1 2169 122 0 0 chr6 20682981 20683284 -168596270 - AluSx SINE Alu -5 307 5 213 343 0 0 chr6 20683429 20683496 -168596058 + L2 LINE L2 3247 3313 0 517 328 15 30 chr6 20683874 20684072 -168595482 - MIR SINE MIR -65 197 3 1273 149 61 105 chr6 20685956 20686251 -168593303 + AluJo SINE Alu 1 282 -30 210 319 112 35 chr6 20687103 20687219 -168592335 - MIR SINE MIR -46 216 92 285 375 65 5 chr6 20687418 20687602 -168591952 - L2 LINE L2 -209 3063 2869 588 286 50 14 chr6 20687602 20687822 -168591732 - MER102b DNA MER1_type -1 340 113 426 209 27 36 chr6 20688008 20688118 -168591436 + MIR3 SINE MIR 77 185 -23 1338 259 37 94 chr6 20688248 20689293 -168590261 + L1MEc LINE L1 2176 3121 -3094 3881 152 25 23 chr6 20689294 20689689 -168589865 - L1 LINE L1 -2242 3904 3506 1313 112 36 83 chr6 20689689 20689882 -168589672 - L1MA2 LINE L1 -1 6303 6125 1860 158 0 20 chr6 20689882 20690186 -168589368 - AluSx SINE Alu -10 302 5 1313 112 36 83 chr6 20690186 20690268 -168589286 - L1MA2 LINE L1 -179 6125 6041 3881 152 25 23 chr6 20690268 20690648 -168588906 - L1 LINE L1 -2640 3506 3128 3487 187 16 50 chr6 20690644 20691431 -168588123 + L1PA15 LINE L1 5400 6160 -5 * 360 0 0 0 chr6 20691453 20691493 -168588061 + (TA)n Simple_repeat Simple_repeat 1 40 0 351 0 0 0 chr6 20691494 20691533 -168588021 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 184 0 0 chr6 20691570 20691608 -168587946 + FLAM_A SINE Alu 1 38 -95 528 144 62 0 chr6 20691610 20691707 -168587847 + AluY SINE Alu 207 309 -2 2967 126 13 2 chr6 20691709 20692184 -168587370 + L1MA6 LINE L1 5821 6300 0 1268 268 78 12 chr6 20692217 20692974 -168586580 + L1ME2 LINE L1 4872 5677 -489 439 182 8 132 chr6 20692980 20693101 -168586453 - Tigger3(Golem) DNA MER2_type 0 3038 2933 255 239 127 0 chr6 20693212 20693226 -168586328 - Tigger3(Golem) DNA MER2_type -522 80 69 2180 34 8 0 chr6 20693226 20693493 -168586061 - L1PA4 LINE L1 -3 6152 5884 255 239 127 0 chr6 20693493 20693549 -168586005 - Tigger3(Golem) DNA MER2_type -533 69 1 785 255 53 18 chr6 20693550 20693878 -168585676 + L1ME2 LINE L1 5689 5967 -197 342 108 40 14 chr6 20693879 20693953 -168585601 + GA-rich Low_complexity Low_complexity 4 79 0 817 111 37 6 chr6 20694063 20694225 -168585329 + GA-rich Low_complexity Low_complexity 4 170 0 460 279 16 14 chr6 20694254 20694427 -168585127 + L1ME2 LINE L1 5992 6166 0 478 222 0 0 chr6 20694498 20694597 -168584957 + FLAM_A SINE Alu 44 142 0 180 176 0 0 chr6 20694654 20694688 -168584866 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 468 203 80 11 chr6 20694786 20694973 -168584581 + L1ME2 LINE L1 4317 4516 -1630 * 1793 241 65 46 chr6 20694944 20695657 -168583897 + L1ME2 LINE L1 5366 6091 -73 826 311 109 45 chr6 20695676 20696550 -168583004 + L2 LINE L2 2358 3313 0 348 261 176 29 chr6 20696615 20696956 -168582598 - L1ME4a LINE L1 -4 6117 5727 431 216 86 35 chr6 20696956 20697072 -168582482 + MIR SINE MIR 127 248 -14 361 153 222 0 chr6 20698194 20698266 -168581288 - MER3 DNA MER1_type -108 101 14 33 43 0 0 chr6 20698608 20698655 -168580899 + AT_rich Low_complexity Low_complexity 1 47 0 348 24 0 0 chr6 20699443 20699484 -168580070 + (TAA)n Simple_repeat Simple_repeat 2 42 0 521 229 92 37 chr6 20699910 20700128 -168579426 - L1MC5 LINE L1 -36 7925 7696 425 233 111 33 chr6 20700141 20700321 -168579233 + L1MC5 LINE L1 7325 7518 -443 282 64 0 43 chr6 20700353 20700400 -168579154 + L1MC5 LINE L1 7603 7647 -314 264 59 0 0 chr6 20700647 20700681 -168578873 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 721 235 105 0 chr6 20701562 20701724 -168577830 - MER58A DNA MER1_type -35 189 11 2300 107 3 0 chr6 20701849 20702159 -168577395 - AluSp SINE Alu -2 311 1 277 217 0 0 chr6 20702175 20702221 -168577333 - L2 LINE L2 -27 3245 3200 182 338 14 0 chr6 20702591 20702662 -168576892 - L2 LINE L2 -527 2787 2716 1527 268 42 28 chr6 20704299 20704770 -168574784 - MER45C DNA AcHobo 0 953 476 946 213 99 116 chr6 20704771 20705204 -168574350 + LTR16A1 LTR ERVL 32 457 0 346 326 70 35 chr6 20705220 20705392 -168574162 - L2 LINE L2 -213 3100 2923 1774 228 45 45 chr6 20705434 20705903 -168573651 + MLT1D LTR MaLR 37 505 0 2619 277 106 25 chr6 20705903 20705952 -168573602 - L2 LINE L2 -378 2936 2892 2541 94 3 25 chr6 20705952 20706315 -168573239 - THE1A LTR MaLR 0 355 1 2619 277 106 25 chr6 20706315 20707343 -168572211 - L2 LINE L2 -422 2892 1772 1775 168 20 0 chr6 20707343 20707647 -168571907 - MLT2D LTR ERVL -104 310 1 35 24 0 0 chr6 20707670 20707712 -168571842 + AT_rich Low_complexity Low_complexity 1 42 0 7484 22 7 1 chr6 20707719 20708829 -168570725 - L1PA3 LINE L1 0 6155 5056 1236 288 156 13 chr6 20708852 20709488 -168570066 - L2 LINE L2 -1641 1673 947 1269 186 122 20 chr6 20709517 20709861 -168569693 + L1MC2 LINE L1 5942 6320 -24 2036 127 41 8 chr6 20709979 20710444 -168569110 + L1MA4A LINE L1 5137 5618 -682 2085 122 60 18 chr6 20710479 20710864 -168568690 + L1MA4A LINE L1 5899 6299 -4 488 326 60 18 chr6 20712144 20712426 -168567128 - L3b LINE CR1 -107 1476 1183 216 233 0 0 chr6 20712900 20712943 -168566611 - L2 LINE L2 -6 3307 3265 226 222 0 19 chr6 20713753 20713807 -168565747 - L2 LINE L2 -1 3271 3219 23 0 0 0 chr6 20714077 20714100 -168565454 + AT_rich Low_complexity Low_complexity 1 23 0 242 250 197 0 chr6 20714628 20714704 -168564850 + MIR3 SINE MIR 113 203 -5 215 386 20 20 chr6 20716607 20716708 -168562846 + L2 LINE L2 3171 3271 -1 2098 139 0 3 chr6 20717499 20717808 -168561746 + AluSg SINE Alu 1 308 -2 487 265 191 5 chr6 20717810 20717999 -168561555 + MIR SINE MIR 17 240 -22 182 264 161 23 chr6 20719108 20719195 -168560359 - L2 LINE L2 -5 3308 3210 408 288 38 23 chr6 20720919 20721051 -168558503 - MIR3 SINE MIR -21 187 54 344 264 157 0 chr6 20722104 20722244 -168557310 - MIR SINE MIR -10 252 91 464 282 74 31 chr6 20722254 20722417 -168557137 + MER91A DNA MER1_type 1 170 -26 185 167 0 7 chr6 20722818 20722852 -168556702 + L2 LINE L2 3216 3290 -23 289 296 72 56 chr6 20723084 20723209 -168556345 + L2 LINE L2 3137 3263 -9 2554 59 0 3 chr6 20723976 20724307 -168555247 - AluY SINE Alu 0 335 6 218 312 48 48 chr6 20725327 20725452 -168554102 + MIR3 SINE MIR 30 154 -54 2063 110 11 7 chr6 20725797 20726109 -168553445 - AluSx SINE Alu 0 313 1 270 231 62 69 chr6 20727674 20727834 -168551720 + MER103 DNA DNA 1 159 -7 852 175 75 0 chr6 20728137 20728297 -168551257 + MLT1B LTR MaLR 1 172 -218 248 262 0 0 chr6 20728375 20728436 -168551118 + MLT1K LTR MaLR 487 547 -41 995 216 5 20 chr6 20728559 20728758 -168550796 + MLT1B LTR MaLR 195 390 0 298 281 62 0 chr6 20729098 20729194 -168550360 + MLT1K LTR MaLR 487 588 0 368 274 5 99 chr6 20729927 20730128 -168549426 - L2 LINE L2 -5 3308 3127 1762 241 107 14 chr6 20730138 20730707 -168548847 + MLT2E LTR ERVL 7 628 0 213 336 40 24 chr6 20730716 20730841 -168548713 - L2 LINE L2 -191 3122 2996 276 30 0 0 chr6 20731974 20732007 -168547547 + (TC)n Simple_repeat Simple_repeat 2 34 0 766 176 0 23 chr6 20732007 20732138 -168547416 - FLAM_C SINE Alu -5 128 1 1127 104 203 5 chr6 20732709 20732901 -168546653 - MER30 DNA MER1_type 0 230 1 24 96 0 0 chr6 20733701 20733774 -168545780 + AT_rich Low_complexity Low_complexity 1 73 0 283 235 0 50 chr6 20734398 20734517 -168545037 + A-rich Low_complexity Low_complexity 2 114 0 630 204 43 81 chr6 20734944 20735130 -168544424 + L2 LINE L2 3135 3313 0 1292 122 23 14 chr6 20735381 20735595 -168543959 - L1MC1 LINE L1 -2 6331 6116 5857 264 22 11 chr6 20735595 20737755 -168541799 - L1PA15-16 LINE L1 -2612 4237 2050 599 137 10 0 chr6 20737756 20737858 -168541696 - AluSg/x SINE Alu -2 308 206 282 125 0 0 chr6 20737858 20737898 -168541656 - Alu SINE Alu -261 40 1 6078 145 1 50 chr6 20737898 20738924 -168540630 - L1PA15-16 LINE L1 -4803 2046 1071 2615 239 27 4 chr6 20738924 20739626 -168539928 - L1M4 LINE L1 -979 5167 4450 1158 230 32 68 chr6 20739626 20740091 -168539463 + MER74A LTR ERVL 2 528 -30 916 297 64 12 chr6 20740161 20740488 -168539066 + LTR16C LTR ERVL 99 442 -49 676 208 40 130 chr6 20740521 20740868 -168538686 - MLT1D LTR MaLR -50 455 21 304 85 0 21 chr6 20740896 20740943 -168538611 + LTR16C LTR ERVL 445 490 -1 324 198 72 18 chr6 20741879 20742046 -168537508 + (TA)n Simple_repeat Simple_repeat 2 177 0 419 282 76 0 chr6 20742072 20742203 -168537351 + MIR SINE MIR 105 245 -17 1881 256 42 19 chr6 20742667 20743209 -168536345 + MLT1H1 LTR MaLR 1 555 0 25 31 0 0 chr6 20743669 20743701 -168535853 + AT_rich Low_complexity Low_complexity 1 32 0 233 339 206 18 chr6 20743960 20744299 -168535255 + L2 LINE L2 2225 2627 -687 1981 271 70 44 chr6 20744479 20745544 -168534010 - L1ME3A LINE L1 -9 6161 5125 1681 194 3 7 chr6 20745544 20745837 -168533717 + AluJb SINE Alu 1 292 -20 1981 271 70 44 chr6 20745837 20745971 -168533583 - L1ME3A LINE L1 -1045 5125 4996 2612 52 0 0 chr6 20745971 20746280 -168533274 + AluY SINE Alu 3 311 0 1981 271 70 44 chr6 20746280 20746521 -168533033 - L1ME3A LINE L1 -1174 4996 4763 2256 103 0 3 chr6 20746521 20746823 -168532731 - AluSx SINE Alu -11 301 1 1981 271 70 44 chr6 20746823 20747029 -168532525 - L1ME3A LINE L1 -1407 4763 4469 345 400 63 44 chr6 20747083 20747482 -168532072 + L2 LINE L2 2835 3244 -28 1828 149 7 40 chr6 20747482 20747784 -168531770 + AluJo SINE Alu 1 292 -20 345 400 63 44 chr6 20747784 20747814 -168531740 + L2 LINE L2 3244 3272 0 235 309 107 62 chr6 20748031 20748209 -168531345 + MER5A DNA MER1_type 2 187 -2 309 26 0 0 chr6 20748770 20748808 -168530746 + (TG)n Simple_repeat Simple_repeat 2 39 0 577 228 64 29 chr6 20750191 20750362 -168529192 - MER5B DNA MER1_type 0 178 2 419 242 59 113 chr6 20750378 20750564 -168528990 + MER5B DNA MER1_type 1 176 -2 342 333 41 20 chr6 20751195 20751390 -168528164 - MIR SINE MIR -30 232 34 1606 210 100 30 chr6 20752223 20752695 -168526859 - MLT1D LTR MaLR 0 505 1 696 267 78 62 chr6 20754279 20754537 -168525017 + MLT1H LTR MaLR 1 262 -287 1012 277 139 7 chr6 20754638 20755341 -168524213 + L1ME1 LINE L1 1949 2702 -3513 1447 249 121 14 chr6 20755352 20755385 -168524169 + L1ME1 LINE L1 5601 5629 -606 414 0 0 0 chr6 20755385 20755431 -168524123 + (TA)n Simple_repeat Simple_repeat 2 47 0 2121 111 3 3 chr6 20755441 20755730 -168523824 - AluSg SINE Alu -21 289 1 1447 249 121 14 chr6 20755730 20756258 -168523296 + L1ME1 LINE L1 5637 6207 -28 340 336 14 42 chr6 20756808 20756951 -168522603 - L2 LINE L2 -944 2370 2232 246 62 0 0 chr6 20757289 20757321 -168522233 + (CA)n Simple_repeat Simple_repeat 2 33 0 714 268 61 58 chr6 20759597 20759910 -168519644 - MER102a DNA MER1_type -16 314 1 260 270 16 0 chr6 20759953 20760016 -168519538 + GA-rich Low_complexity Low_complexity 1 64 0 1838 84 26 4 chr6 20760047 20760320 -168519234 - L1MA1 LINE L1 0 6302 6024 340 283 9 0 chr6 20760483 20760589 -168518965 - L1M4 LINE L1 -1155 4991 4885 358 122 40 0 chr6 20760672 20760746 -168518808 + GA-rich Low_complexity Low_complexity 1 77 0 277 250 134 0 chr6 20760748 20760860 -168518694 - L1M4 LINE L1 -1316 4830 4704 1467 269 65 11 chr6 20760994 20761514 -168518040 + L1ME3A LINE L1 5615 6162 -8 296 100 0 20 chr6 20761874 20761924 -168517630 + (TTTCC)n Simple_repeat Simple_repeat 2 50 0 391 339 94 29 chr6 20762589 20762834 -168516720 - LTR16C LTR ERVL -110 381 121 314 356 43 12 chr6 20763050 20763213 -168516341 + MER5A DNA MER1_type 17 184 -5 201 129 0 0 chr6 20764310 20764341 -168515213 + (GA)n Simple_repeat Simple_repeat 2 32 0 225 132 0 0 chr6 20764718 20764756 -168514798 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2955 128 43 63 chr6 20764759 20765297 -168514257 + MER1A DNA MER1_type 1 527 0 354 257 180 11 chr6 20765614 20765797 -168513757 - L1ME3A LINE L1 -321 5849 5636 1146 180 31 0 chr6 20765797 20765991 -168513563 - MER20 DNA MER1_type 0 219 20 705 277 88 20 chr6 20765992 20766462 -168513092 - L1ME3A LINE L1 -518 5644 5146 24 77 0 0 chr6 20766462 20766514 -168513040 + AT_rich Low_complexity Low_complexity 1 52 0 837 246 22 18 chr6 20766587 20766815 -168512739 + MLT1F LTR MaLR 143 371 -171 631 174 0 9 chr6 20766834 20766943 -168512611 + MLT1A1 LTR MaLR 42 149 -216 441 215 47 67 chr6 20766931 20767080 -168512474 + MLT1F LTR MaLR 422 567 0 * 11846 18 1 0 chr6 20767367 20768746 -168510808 - L1P LINE L1 -1397 4749 3370 376 119 95 24 chr6 20769136 20769220 -168510334 - L1MC2 LINE L1 0 6344 6255 684 206 0 21 chr6 20769226 20769367 -168510187 - L1MC3 LINE L1 -439 7346 7209 * 3727 171 103 99 chr6 20769347 20769546 -168510008 - L1MC3 LINE L1 -93 7692 7495 2061 148 0 6 chr6 20769546 20769857 -168509697 - AluSg SINE Alu 0 310 2 3727 171 103 99 chr6 20769857 20770189 -168509365 - L1MC3 LINE L1 -290 7495 7166 322 287 0 10 chr6 20770189 20770290 -168509264 - MLT1F1 LTR MaLR -442 125 26 3727 171 103 99 chr6 20770290 20770496 -168509058 - L1MC3 LINE L1 -619 7166 6962 180 0 0 0 chr6 20770496 20770516 -168509038 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3727 171 103 99 chr6 20770516 20771029 -168508525 - L1MC3 LINE L1 -823 6962 6335 1430 82 0 0 chr6 20771066 20771250 -168508304 - AluY SINE Alu -4 307 124 5457 188 32 11 chr6 20771686 20773289 -168506265 - L1MC1 LINE L1 -5 6328 4694 3063 45 3 0 chr6 20773912 20774287 -168505267 - L1PA8 LINE L1 -2 6170 5795 281 274 39 20 chr6 20775184 20775286 -168504268 + MER94 DNA DNA 1 104 -30 2519 213 44 15 chr6 20775286 20776028 -168503526 - L1MB7 LINE L1 -258 5926 5160 1602 262 21 24 chr6 20776059 20776698 -168502856 - L1M4c LINE L1 -4315 2248 1469 248 243 45 9 chr6 20776699 20776810 -168502744 - L1MB7 LINE L1 -3211 2935 2821 265 165 107 58 chr6 20776856 20776959 -168502595 - LTR26 LTR ERV1 -31 572 465 808 270 86 35 chr6 20777307 20777852 -168501702 - L1MB7 LINE L1 -3335 2811 2239 2332 158 109 23 chr6 20777854 20778378 -168501176 + LTR49 LTR ERV1 1 569 -26 346 207 186 41 chr6 20778396 20778541 -168501013 - L1MEc LINE L1 -4047 2349 2184 523 160 84 0 chr6 20778608 20778727 -168500827 - L1 LINE L1 -1422 4724 4596 389 169 36 36 chr6 20778858 20779024 -168500530 + (TA)n Simple_repeat Simple_repeat 1 166 0 262 254 8 57 chr6 20779025 20779147 -168500407 - L1MC4 LINE L1 -1338 6704 6589 * 8469 194 34 27 chr6 20779141 20780429 -168499125 - L1 LINE L1 -1545 4601 3294 6575 76 12 3 chr6 20780429 20781888 -168497666 - L1PA10 LINE L1 -14 6154 4678 8469 194 34 27 chr6 20781888 20782641 -168496913 - L1 LINE L1 -2852 3294 2547 226 204 0 74 chr6 20782646 20782700 -168496854 + L1MA7 LINE L1 1357 1406 -6090 3052 302 72 40 chr6 20782738 20785244 -168494310 + L1MA7 LINE L1 1268 3499 -4066 1731 146 15 0 chr6 20785247 20785521 -168494033 + AluJb SINE Alu 1 278 -34 871 122 6 33 chr6 20785539 20785720 -168493834 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 242 229 14 0 chr6 20785730 20785800 -168493754 + GA-rich Low_complexity Low_complexity 1 71 0 2226 228 22 17 chr6 20785802 20786564 -168492990 + L1MA7 LINE L1 3462 4228 -3337 * 4769 192 26 28 chr6 20786555 20787362 -168492192 + L1MA7 LINE L1 5033 5840 -1870 6209 87 7 0 chr6 20787362 20788032 -168491522 - L1PA10 LINE L1 -1 6167 5481 2102 148 0 0 chr6 20788032 20788330 -168491224 - AluSx SINE Alu -14 298 1 6209 87 7 0 chr6 20788330 20788967 -168490587 - L1PA10 LINE L1 -687 5481 4850 4769 192 26 28 chr6 20788967 20789704 -168489850 + L1MA7 LINE L1 5840 6574 -1136 387 105 0 0 chr6 20789704 20789761 -168489793 + (CA)n Simple_repeat Simple_repeat 2 58 0 4769 192 26 28 chr6 20789761 20790383 -168489171 + L1MA7 LINE L1 6574 7195 -515 183 80 0 0 chr6 20790383 20790408 -168489146 + (TG)n Simple_repeat Simple_repeat 2 26 0 207 194 0 0 chr6 20790408 20790444 -168489110 + (CATATA)n Simple_repeat Simple_repeat 2 37 0 238 186 0 134 chr6 20790563 20790660 -168488894 - L1MC4 LINE L1 -1339 6703 6620 308 314 0 10 chr6 20790662 20790764 -168488790 + (TA)n Simple_repeat Simple_repeat 2 102 0 2235 157 36 38 chr6 20790774 20791277 -168488277 + L1MA7 LINE L1 7202 7703 -7 1518 234 204 11 chr6 20791298 20792373 -168487181 - L1 LINE L1 -3585 3980 2655 5804 59 8 1 chr6 20792373 20793116 -168486438 + L1PA7 LINE L1 5403 6150 -4 22 35 0 0 chr6 20793116 20793145 -168486409 + AT_rich Low_complexity Low_complexity 1 29 0 4265 186 10 12 chr6 20793146 20794152 -168485402 - L1P LINE L1 -1561 4585 3371 3282 246 78 99 chr6 20794147 20794746 -168484808 - L1M3c LINE L1 -4577 1564 954 * 193 29 29 29 chr6 20794746 20794781 -168484773 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3282 246 78 99 chr6 20794781 20794835 -168484719 - L1M3c LINE L1 -5187 954 900 2165 114 0 29 chr6 20794835 20795151 -168484403 - AluSc SINE Alu 0 309 3 3282 246 78 99 chr6 20795151 20796089 -168483465 - L1M3c LINE L1 -5241 900 5 334 269 149 0 chr6 20796294 20796428 -168483126 + L2 LINE L2 3159 3312 -1 23 54 0 0 chr6 20798557 20798594 -168480960 + AT_rich Low_complexity Low_complexity 1 37 0 1460 191 12 8 chr6 20798904 20799161 -168480393 - AluJo SINE Alu -20 292 35 2536 164 31 0 chr6 20799461 20799912 -168479642 + LTR40c LTR ERVL 1 465 0 897 235 4 25 chr6 20800599 20800837 -168478717 - MER106A DNA MER1_type -3 233 1 712 269 115 8 chr6 20801031 20801265 -168478289 + MIR SINE MIR 2 260 -2 1525 166 3 108 chr6 20801323 20801666 -168477888 + AluJo SINE Alu 1 307 -5 2442 51 0 38 chr6 20802015 20802329 -168477225 - AluY SINE Alu -9 302 1 23 68 0 0 chr6 20802517 20802561 -168476993 + AT_rich Low_complexity Low_complexity 1 44 0 264 281 115 10 chr6 20802983 20803079 -168476475 + MIR SINE MIR 46 151 -111 2016 208 92 45 chr6 20803493 20804129 -168475425 + MLT1E2 LTR MaLR 2 623 -3 204 277 0 0 chr6 20804208 20804255 -168475299 - MIR SINE MIR 0 262 216 183 309 111 12 chr6 20804327 20804408 -168475146 - MIR SINE MIR -151 111 23 1529 172 16 62 chr6 20805785 20806105 -168473449 + AluJo SINE Alu 1 305 -7 363 275 174 40 chr6 20806289 20806565 -168472989 + HAL1 LINE L1 810 1122 -1385 21 0 0 0 chr6 20806691 20806712 -168472842 + AT_rich Low_complexity Low_complexity 1 21 0 2152 100 19 23 chr6 20806891 20807201 -168472353 + AluSc SINE Alu 1 309 0 186 179 0 0 chr6 20807201 20807233 -168472321 + A-rich Low_complexity Low_complexity 5 39 0 1166 210 81 23 chr6 20807252 20807811 -168471743 + MLT1E1 LTR MaLR 2 651 -3 543 239 167 22 chr6 20807823 20808045 -168471509 + HAL1 LINE L1 1397 1650 -857 1664 238 62 34 chr6 20808244 20808821 -168470733 - L1ME3 LINE L1 -1 6161 5572 539 333 139 17 chr6 20808968 20809508 -168470046 + L2 LINE L2 2682 3291 -22 27 29 0 0 chr6 20809829 20809863 -168469691 + AT_rich Low_complexity Low_complexity 1 34 0 596 347 34 18 chr6 20813834 20814088 -168465466 + MIR SINE MIR 6 262 0 21 57 0 0 chr6 20815153 20815188 -168464366 + AT_rich Low_complexity Low_complexity 1 35 0 3204 188 113 32 chr6 20815477 20816589 -168462965 - L1MB7 LINE L1 -31 6153 4963 * 3473 232 68 51 chr6 20816588 20817857 -168461697 - L1MB7 LINE L1 -1497 4649 3360 336 315 92 45 chr6 20818179 20818361 -168461193 + MLT1J2 LTR MaLR 17 220 -230 1915 151 39 21 chr6 20818361 20818692 -168460862 - MER1B DNA MER1_type 0 337 1 336 315 92 45 chr6 20818692 20818801 -168460753 + MLT1J2 LTR MaLR 220 322 -128 2463 49 0 20 chr6 20818802 20819108 -168460446 - AluY SINE Alu -11 300 1 226 306 28 0 chr6 20819151 20819223 -168460331 + MLT1I LTR MaLR 334 407 -2 11514 200 62 33 chr6 20819552 20821929 -168457625 - L1MA4 LINE L1 -1 7718 5412 2455 87 0 0 chr6 20821929 20822240 -168457314 - AluY SINE Alu 0 311 1 11514 200 62 33 chr6 20822240 20823498 -168456056 - L1MA4 LINE L1 -2307 5412 4192 2272 146 72 12 chr6 20823498 20823902 -168455652 - MSTA LTR MaLR 0 428 1 11514 200 62 33 chr6 20823902 20825738 -168453816 - L1MA4 LINE L1 -3527 4192 2007 1564 192 76 38 chr6 20825740 20826162 -168453392 - L1MA4 LINE L1 -7115 450 13 1064 238 135 81 chr6 20826383 20827505 -168452049 - HAL1b LINE L1 -62 1286 105 26 0 0 0 chr6 20827807 20827833 -168451721 + AT_rich Low_complexity Low_complexity 1 26 0 470 315 67 17 chr6 20829302 20829480 -168450074 + MIR3 SINE MIR 1 187 -21 1664 182 12 87 chr6 20829927 20830329 -168449225 + MLT1A2 LTR MaLR 3 374 0 696 222 23 77 chr6 20832127 20832348 -168447206 - MER63A DNA MER1_type -1 209 1 201 316 18 0 chr6 20833209 20833266 -168446288 - L2 LINE L2 -2 3311 3254 248 272 25 0 chr6 20833408 20833489 -168446065 - L1MA9 LINE L1 -38 6274 6192 1444 180 3 84 chr6 20833906 20834229 -168445325 + AluJo SINE Alu 1 297 -15 463 246 49 49 chr6 20834431 20834634 -168444920 - MLT1J LTR MaLR -9 502 300 245 163 0 0 chr6 20835574 20835617 -168443937 + L1MC1 LINE L1 5618 5660 -684 5760 62 1 5 chr6 20835618 20836364 -168443190 + L1PA8 LINE L1 5428 6170 -2 3698 145 31 9 chr6 20836365 20837019 -168442535 + L1MC1 LINE L1 5664 6331 -2 732 172 8 15 chr6 20837751 20837885 -168441669 + FLAM_C SINE Alu 1 133 0 240 154 13 90 chr6 20837944 20838022 -168441532 - L1MC4 LINE L1 -1321 6721 6650 454 309 18 30 chr6 20838551 20838719 -168440835 + MER5B DNA MER1_type 1 166 -12 21 0 0 0 chr6 20839118 20839139 -168440415 + AT_rich Low_complexity Low_complexity 1 21 0 2156 193 12 14 chr6 20839896 20840310 -168439244 + L1MCa LINE L1 41 453 -5973 12509 212 20 64 chr6 20840514 20840560 -168438994 - L1PA15 LINE L1 -3 7600 7553 3506 109 35 11 chr6 20840560 20841126 -168438428 - L1MA3 LINE L1 0 6305 5726 12509 212 20 64 chr6 20841126 20842512 -168437042 - L1PA15 LINE L1 -50 7553 6107 1360 165 114 22 chr6 20842512 20842785 -168436769 - MSTA LTR MaLR -130 298 1 12509 212 20 64 chr6 20842785 20845929 -168433625 - L1PA15 LINE L1 -1496 6107 2824 2671 132 24 5 chr6 20845929 20846346 -168433208 + MSTA LTR MaLR 1 425 -3 12509 212 20 64 chr6 20846346 20846897 -168432657 - L1PA15 LINE L1 -4779 2824 2455 953 39 0 39 chr6 20846897 20847046 -168432508 - L1PA3 LINE L1 0 6155 6034 12509 212 20 64 chr6 20847046 20847256 -168432298 - L1PA15 LINE L1 -5148 2455 2237 836 355 27 34 chr6 20847907 20848349 -168431205 - L1PA15 LINE L1 -6348 1226 788 1668 144 32 16 chr6 20848358 20848841 -168430713 + L1MC1 LINE L1 1425 2008 -4418 1247 183 32 67 chr6 20848841 20849223 -168430331 - MLT1A1 LTR MaLR 0 428 4 7702 255 47 21 chr6 20849255 20849630 -168429924 + L1MC1 LINE L1 2187 2551 -3875 468 0 0 0 chr6 20849630 20849682 -168429872 + (CA)n Simple_repeat Simple_repeat 2 53 0 7702 255 47 21 chr6 20849682 20851871 -168427683 + L1MC1 LINE L1 2551 4924 -1502 2234 99 0 34 chr6 20851871 20852193 -168427361 + AluY SINE Alu 1 311 0 7702 255 47 21 chr6 20852193 20852823 -168426731 + L1MC1 LINE L1 4924 5536 -890 478 231 0 38 chr6 20852896 20853082 -168426472 + (TATAA)n Simple_repeat Simple_repeat 2 180 0 5800 145 41 14 chr6 20853190 20854229 -168425325 + L1MC1 LINE L1 5544 6611 -2 225 0 0 0 chr6 20854258 20854283 -168425271 + (GGGA)n Simple_repeat Simple_repeat 4 28 0 225 329 35 0 chr6 20855366 20855451 -168424103 - MIR3 SINE MIR -21 187 100 207 0 0 0 chr6 20855462 20855485 -168424069 + (TG)n Simple_repeat Simple_repeat 2 24 0 1278 173 145 9 chr6 20857485 20857803 -168421751 - MER46B DNA MER2_type 0 236 1 222 37 0 0 chr6 20857809 20857836 -168421718 + (TG)n Simple_repeat Simple_repeat 2 28 0 318 26 0 0 chr6 20857836 20857875 -168421679 + (CA)n Simple_repeat Simple_repeat 2 40 0 188 329 157 0 chr6 20857878 20857948 -168421606 - MIR SINE MIR -150 112 32 272 345 11 11 chr6 20858038 20858125 -168421429 + L2 LINE L2 3141 3227 -45 293 276 134 65 chr6 20858355 20858616 -168420938 + MLT1I LTR MaLR 121 399 -10 599 248 94 20 chr6 20858906 20859108 -168420446 - MIR SINE MIR -31 231 15 1487 204 56 36 chr6 20859768 20860021 -168419533 + MLT1A1 LTR MaLR 1 265 -100 2448 124 53 17 chr6 20860021 20860433 -168419121 - MSTA LTR MaLR -1 427 1 1487 204 56 36 chr6 20860433 20860537 -168419017 + MLT1A1 LTR MaLR 265 365 0 3341 195 32 9 chr6 20860604 20861234 -168418320 + MER82 DNA MER2_type 1 644 -9 1261 244 15 66 chr6 20861234 20861628 -168417926 + MLT1A2 LTR MaLR 1 374 0 364 309 12 49 chr6 20861641 20861803 -168417751 - MIR SINE MIR -104 158 3 575 341 143 19 chr6 20866528 20866953 -168412601 - MLT1K LTR MaLR -14 574 97 624 163 255 0 chr6 20867077 20867230 -168412324 - L1M4 LINE L1 -3625 2521 2330 2217 124 0 9 chr6 20867638 20867953 -168411601 + AluSq SINE Alu 1 312 -1 342 220 53 83 chr6 20868050 20868182 -168411372 + L2 LINE L2 2929 3056 -216 521 190 26 113 chr6 20868695 20868890 -168410664 - MER104 DNA MER2_type -1 179 2 195 261 136 23 chr6 20868903 20868991 -168410563 - MIR3 SINE MIR -8 200 103 2347 111 0 0 chr6 20869362 20869668 -168409886 + AluSg SINE Alu 1 306 -4 1471 226 22 38 chr6 20870904 20871063 -168408491 - MLT1A1 LTR MaLR 0 365 205 1878 150 0 33 chr6 20871063 20871363 -168408191 + AluJo SINE Alu 1 290 -22 1471 226 22 38 chr6 20871363 20871574 -168407980 - MLT1A1 LTR MaLR -160 205 1 225 0 0 0 chr6 20871746 20871771 -168407783 + (T)n Simple_repeat Simple_repeat 1 25 0 267 271 33 74 chr6 20871791 20871913 -168407641 - MIR3 SINE MIR -5 203 87 441 215 47 67 chr6 20872712 20872861 -168406693 - MLT1F LTR MaLR 0 567 422 * 631 174 0 9 chr6 20872849 20872958 -168406596 - MLT1A1 LTR MaLR -216 149 42 837 246 22 18 chr6 20872977 20873205 -168406349 - MLT1F LTR MaLR -171 371 143 24 77 0 0 chr6 20873278 20873330 -168406224 + AT_rich Low_complexity Low_complexity 1 52 0 705 277 88 20 chr6 20873330 20873800 -168405754 + L1ME3A LINE L1 5146 5644 -518 1146 180 31 0 chr6 20873801 20873995 -168405559 + MER20 DNA MER1_type 20 219 0 354 257 180 11 chr6 20873995 20874178 -168405376 + L1ME3A LINE L1 5636 5849 -321 2955 128 43 63 chr6 20874495 20875033 -168404521 - MER1A DNA MER1_type 0 527 1 225 132 0 0 chr6 20875036 20875074 -168404480 + (CATA)n Simple_repeat Simple_repeat 3 40 0 201 129 0 0 chr6 20875451 20875482 -168404072 + (TC)n Simple_repeat Simple_repeat 2 32 0 314 356 43 12 chr6 20876579 20876742 -168402812 - MER5A DNA MER1_type -5 184 17 391 339 94 29 chr6 20876958 20877203 -168402351 + LTR16C LTR ERVL 121 381 -110 296 100 0 20 chr6 20877868 20877918 -168401636 + (GGAAA)n Simple_repeat Simple_repeat 2 50 0 1467 269 65 11 chr6 20878278 20878798 -168400756 - L1ME3A LINE L1 -8 6162 5615 277 250 134 0 chr6 20878932 20879044 -168400510 + L1M4 LINE L1 4704 4830 -1316 358 122 40 0 chr6 20879046 20879120 -168400434 + CT-rich Low_complexity Low_complexity 1 77 0 340 283 9 0 chr6 20879203 20879309 -168400245 + L1M4 LINE L1 4885 4991 -1155 1838 84 26 4 chr6 20879472 20879745 -168399809 + L1MA1 LINE L1 6024 6302 0 260 270 16 0 chr6 20879776 20879839 -168399715 + CT-rich Low_complexity Low_complexity 1 64 0 714 268 61 58 chr6 20879882 20880195 -168399359 + MER102a DNA MER1_type 1 314 -16 246 62 0 0 chr6 20882471 20882503 -168397051 + (TG)n Simple_repeat Simple_repeat 2 33 0 340 336 14 42 chr6 20882841 20882984 -168396570 + L2 LINE L2 2232 2370 -944 1447 249 121 14 chr6 20883534 20884062 -168395492 - L1ME1 LINE L1 -28 6138 5668 2121 111 3 3 chr6 20884062 20884351 -168395203 + AluSg SINE Alu 1 289 -21 414 0 0 0 chr6 20884361 20884407 -168395147 + (TA)n Simple_repeat Simple_repeat 2 47 0 1447 249 121 14 chr6 20884407 20884440 -168395114 - L1ME1 LINE L1 -506 5660 5532 1012 277 139 7 chr6 20884451 20885154 -168394400 - L1MEc LINE L1 -3513 2702 1949 696 267 78 62 chr6 20885255 20885513 -168394041 - MLT1H LTR MaLR -287 262 1 1606 210 100 30 chr6 20887097 20887569 -168391985 + MLT1D LTR MaLR 1 505 0 342 333 41 20 chr6 20888402 20888597 -168390957 + MIR SINE MIR 34 232 -30 419 220 70 124 chr6 20889228 20889414 -168390140 - MER5B DNA MER1_type -2 176 1 577 228 64 29 chr6 20889430 20889601 -168389953 + MER5B DNA MER1_type 2 178 0 489 17 0 0 chr6 20890984 20891042 -168388512 + (CA)n Simple_repeat Simple_repeat 2 59 0 190 274 131 69 chr6 20891603 20891778 -168387776 - MER5A DNA MER1_type -2 187 2 488 260 11 14 chr6 20992023 20992134 -168287420 - MER5A DNA MER1_type 0 189 67 2271 107 0 7 chr6 20992134 20992433 -168287121 + AluSx SINE Alu 1 297 -15 488 260 11 14 chr6 20992433 20992464 -168287090 - MER5A DNA MER1_type -122 67 37 1904 162 0 7 chr6 20993963 20994247 -168285307 + AluJb SINE Alu 1 282 -30 287 253 55 28 chr6 20994320 20994502 -168285052 - L1ME4a LINE L1 0 6121 5935 611 281 151 54 chr6 20994814 20995323 -168284231 - L2 LINE L2 0 3313 2855 186 43 0 0 chr6 20995323 20995346 -168284208 + (GAAAA)n Simple_repeat Simple_repeat 5 27 0 611 281 151 54 chr6 20995346 20995426 -168284128 - L2 LINE L2 -458 2855 1893 523 186 144 121 chr6 20996115 20996379 -168283175 - LTR16C LTR ERVL 0 491 222 374 237 47 39 chr6 20996836 20997011 -168282543 - MLT1I LTR MaLR -4 405 244 1297 202 130 55 chr6 20997099 20997605 -168281949 - LTR10B LTR ERV1 -3 544 1 306 155 113 0 chr6 20997647 20997718 -168281836 - MLT1J2 LTR MaLR -305 145 67 326 346 39 0 chr6 20998011 20998115 -168281439 - MIR3 SINE MIR -48 160 53 298 330 104 0 chr6 20998791 20998897 -168280657 + MIR3 SINE MIR 89 205 -3 357 305 98 98 chr6 20999192 20999474 -168280080 - L2 LINE L2 -3 3269 2985 2373 103 3 0 chr6 20999474 20999776 -168279778 + AluSp SINE Alu 1 303 -10 357 305 98 98 chr6 20999776 20999808 -168279746 - L2 LINE L2 -286 2986 2955 616 254 87 0 chr6 20999849 21000022 -168279532 + MIR SINE MIR 63 250 -12 459 306 23 68 chr6 21000046 21000311 -168279243 - L2 LINE L2 -823 2491 2239 1368 99 0 11 chr6 21000479 21000661 -168278893 - AluSc SINE Alu 0 309 130 213 39 0 0 chr6 21000785 21000811 -168278743 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr6 21001005 21001028 -168278526 + AT_rich Low_complexity Low_complexity 1 23 0 1379 135 13 9 chr6 21001695 21001924 -168277630 + MSTA LTR MaLR 187 416 -12 2403 52 0 3 chr6 21001947 21002237 -168277317 - AluY SINE Alu -22 289 1 430 288 16 47 chr6 21002657 21002977 -168276577 + L1MEd LINE L1 1019 1328 -4877 1035 305 76 49 chr6 21003657 21004151 -168275403 + L1MEd LINE L1 2213 2702 -3513 1601 186 13 26 chr6 21004151 21004457 -168275097 + AluJo SINE Alu 5 306 -6 1035 305 76 49 chr6 21004457 21004848 -168274706 + L1MEd LINE L1 2702 3081 -3134 519 267 64 30 chr6 21005005 21005207 -168274347 + LTR33 LTR ERVL 301 509 -12 24 0 0 0 chr6 21005582 21005606 -168273948 + AT_rich Low_complexity Low_complexity 1 24 0 292 256 45 77 chr6 21008538 21008694 -168270860 - MIR SINE MIR -72 190 40 385 264 0 0 chr6 21010161 21010248 -168269306 - Tigger5 DNA MER2_type 0 2323 2237 265 204 19 0 chr6 21010258 21010312 -168269242 - Tigger5 DNA MER2_type -2268 55 1 343 284 83 89 chr6 21013558 21013620 -168265934 + HAL1b LINE L1 83 144 -1204 2068 165 0 0 chr6 21013620 21013929 -168265625 + AluSx SINE Alu 1 309 -3 343 284 83 89 chr6 21013929 21014896 -168264658 + HAL1b LINE L1 144 1106 -242 5878 141 11 3 chr6 21014918 21015611 -168263943 - L1PA13 LINE L1 0 6814 6128 2342 104 7 0 chr6 21015611 21015920 -168263634 + AluSq SINE Alu 1 311 -2 5878 141 11 3 chr6 21015920 21018329 -168261225 - L1PA13 LINE L1 -686 6128 3510 2218 116 41 36 chr6 21018329 21018691 -168260863 - THE1B LTR MaLR 0 364 1 8877 112 112 2 chr6 21018691 21020115 -168259439 - THE1B-int LTR MaLR 0 1580 1 2137 114 44 39 chr6 21020115 21020475 -168259079 - THE1B LTR MaLR 0 364 3 9893 207 54 12 chr6 21020478 21023760 -168255794 - L1PA13 LINE L1 -3284 3513 79 1998 234 56 34 chr6 21023806 21024487 -168255067 - L1ME1 LINE L1 0 6166 5471 1745 193 3 6 chr6 21024511 21024822 -168254732 + AluJb SINE Alu 3 312 0 2300 160 14 17 chr6 21024838 21025251 -168254303 + L1PA16 LINE L1 5746 6157 -9 310 229 121 60 chr6 21025291 21025305 -168254249 + HAL1b LINE L1 1171 1183 -165 194 0 39 0 chr6 21025305 21025331 -168254223 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 310 229 121 60 chr6 21025331 21025482 -168254072 + HAL1b LINE L1 1183 1346 -2 238 316 0 0 chr6 21025512 21025607 -168253947 - L1ME LINE L1 -303 5818 5724 300 342 58 32 chr6 21025665 21025820 -168253734 - L1ME LINE L1 -515 5606 5448 5721 128 16 0 chr6 21025908 21026913 -168252641 - L1PA15 LINE L1 -7 6158 5155 4305 208 84 18 chr6 21026913 21027861 -168251693 - L1PA13 LINE L1 -4550 2237 1200 2118 131 137 13 chr6 21027861 21028242 -168251312 + MSTA LTR MaLR 1 428 0 4305 208 84 18 chr6 21028242 21028427 -168251127 - L1PA13 LINE L1 -5587 1200 1029 1707 254 16 70 chr6 21028748 21029420 -168250134 - L1PA13 LINE L1 -5871 916 281 4190 205 65 13 chr6 21029425 21030160 -168249394 - L1MC3 LINE L1 -743 5403 5491 1330 142 93 123 chr6 21030160 21030624 -168248930 + LTR7 LTR ERV1 1 450 0 4190 205 65 13 chr6 21030624 21031315 -168248239 - L1MC3 LINE L1 -654 5492 4839 1073 258 56 20 chr6 21031321 21031716 -168247838 - L1MCb LINE L1 -5596 449 41 1664 127 79 17 chr6 21031719 21032094 -168247460 - LTR7 LTR ERV1 0 450 1 2085 84 87 3 chr6 21032859 21033145 -168246409 - AluY SINE Alu -1 310 1 21 82 0 0 chr6 21033145 21033194 -168246360 + AT_rich Low_complexity Low_complexity 1 49 0 415 264 61 61 chr6 21033543 21033706 -168245848 + MIR SINE MIR 100 262 0 332 221 108 64 chr6 21033724 21033928 -168245626 + L2 LINE L2 3049 3261 -52 335 218 73 57 chr6 21034005 21034129 -168245425 - L1ME4a LINE L1 -42 6079 5954 309 303 148 7 chr6 21034134 21034289 -168245265 - L1ME4a LINE L1 -204 5917 5741 356 289 175 0 chr6 21034358 21034472 -168245082 - L2 LINE L2 0 3313 3180 206 389 46 28 chr6 21035660 21035768 -168243786 - L2 LINE L2 0 3272 3163 24 0 0 0 chr6 21036288 21036312 -168243242 + AT_rich Low_complexity Low_complexity 1 24 0 2922 156 35 22 chr6 21036509 21037048 -168242506 + MER44D DNA MER2_type 4 604 -1 23 54 0 0 chr6 21037561 21037598 -168241956 + AT_rich Low_complexity Low_complexity 1 37 0 254 331 225 0 chr6 21038094 21038263 -168241291 - MIR SINE MIR -51 211 5 40995 41 5 2 chr6 21038443 21044595 -168234959 + L1PA4 LINE L1 3 6155 0 252 0 0 0 chr6 21044713 21044741 -168234813 + (A)n Simple_repeat Simple_repeat 1 28 0 430 259 189 5 chr6 21044814 21045026 -168234528 - MIR SINE MIR -1 261 11 722 254 82 37 chr6 21045626 21045980 -168233574 - L1MC4a LINE L1 -1865 5943 5574 366 243 95 48 chr6 21046208 21046397 -168233157 - L1MC4a LINE L1 -2260 5548 5351 288 317 110 44 chr6 21046950 21047443 -168232111 - L1MC4a LINE L1 -1797 4349 3789 4526 174 27 15 chr6 21047443 21048354 -168231200 - L1MA10 LINE L1 -7 6327 5406 288 317 110 44 chr6 21048354 21048608 -168230946 - L1MC4a LINE L1 -2357 3789 3553 904 285 88 0 chr6 21048979 21049242 -168230312 - MER58 DNA MER1_type -54 2366 2 595 301 49 24 chr6 21051134 21051380 -168228174 - MLT1I LTR MaLR -1 408 157 1653 228 55 36 chr6 21052037 21052664 -168226890 + L1MCc LINE L1 993 1634 -4851 828 173 7 0 chr6 21052664 21052803 -168226751 - MLT1B LTR MaLR 0 390 251 3288 258 72 24 chr6 21052859 21055293 -168224261 + L1MCc LINE L1 1647 4375 -2566 2968 287 58 14 chr6 21055332 21056228 -168223326 + L1M4b LINE L1 13 947 -5912 25070 144 24 39 chr6 21056240 21060963 -168218591 + L1PA8 LINE L1 12 4661 -1485 6750 68 7 6 chr6 21060963 21062234 -168217320 + L1PA8 LINE L1 4909 6161 -11 2274 246 75 46 chr6 21062251 21063838 -168215716 + L1M4b LINE L1 936 2703 -4435 440 218 42 28 chr6 21064072 21064214 -168215340 + L1M4 LINE L1 1420 1563 -5292 2292 83 0 23 chr6 21064261 21064563 -168214991 + AluY SINE Alu 1 295 -16 5062 82 0 9 chr6 21064563 21065235 -168214319 + L1P LINE L1 2 667 -5479 7041 184 6 7 chr6 21165326 21166786 -168112768 - L1PA13 LINE L1 -1830 4967 3510 2218 116 41 36 chr6 21166786 21167148 -168112406 - THE1B LTR MaLR 0 364 1 8877 112 112 2 chr6 21167148 21168572 -168110982 - THE1B-int LTR MaLR 0 1580 1 2137 114 44 39 chr6 21168572 21168932 -168110622 - THE1B LTR MaLR 0 364 3 9888 207 54 12 chr6 21168935 21172217 -168107337 - L1PA13 LINE L1 -3284 3513 79 1998 234 56 34 chr6 21172263 21172944 -168106610 - L1ME1 LINE L1 0 6166 5471 1732 196 3 6 chr6 21172968 21173279 -168106275 + AluJb SINE Alu 3 312 0 2283 162 14 17 chr6 21173295 21173708 -168105846 + L1PA16 LINE L1 5746 6157 -9 310 230 105 66 chr6 21173786 21173938 -168105616 + HAL1b LINE L1 1189 1346 -2 238 316 0 0 chr6 21173968 21174063 -168105491 - L1ME LINE L1 -303 5818 5724 300 342 58 32 chr6 21174121 21174276 -168105278 - L1ME LINE L1 -515 5606 5448 5748 127 16 0 chr6 21174364 21175369 -168104185 - L1PA15 LINE L1 -7 6158 5155 4301 208 84 18 chr6 21175369 21176317 -168103237 - L1PA13 LINE L1 -4550 2237 1200 2118 131 137 13 chr6 21176317 21176698 -168102856 + MSTA LTR MaLR 1 428 0 4301 208 84 18 chr6 21176698 21176883 -168102671 - L1PA13 LINE L1 -5587 1200 1029 1707 254 16 70 chr6 21177204 21177876 -168101678 - L1PA13 LINE L1 -5871 916 281 4190 205 65 13 chr6 21177881 21178616 -168100938 - L1MC3 LINE L1 -743 5403 5491 1330 142 93 123 chr6 21178616 21179080 -168100474 + LTR7 LTR ERV1 1 450 0 4190 205 65 13 chr6 21179080 21179771 -168099783 - L1MC3 LINE L1 -654 5492 4839 1073 258 56 20 chr6 21179777 21180172 -168099382 - L1MCb LINE L1 -5596 449 41 1664 127 79 17 chr6 21180175 21180550 -168099004 - LTR7 LTR ERV1 0 450 1 2085 84 87 3 chr6 21181315 21181601 -168097953 - AluY SINE Alu -1 310 1 21 82 0 0 chr6 21181601 21181650 -168097904 + AT_rich Low_complexity Low_complexity 1 49 0 415 264 61 61 chr6 21181999 21182162 -168097392 + MIR SINE MIR 100 262 0 332 221 108 64 chr6 21182180 21182384 -168097170 + L2 LINE L2 3049 3261 -52 335 218 73 57 chr6 21182461 21182585 -168096969 - L1ME4a LINE L1 -42 6079 5954 309 303 148 7 chr6 21182590 21182745 -168096809 - L1ME4a LINE L1 -204 5917 5741 356 289 175 0 chr6 21182814 21182928 -168096626 - L2 LINE L2 0 3313 3180 206 389 46 28 chr6 21184116 21184224 -168095330 - L2 LINE L2 0 3272 3163 24 0 0 0 chr6 21184744 21184768 -168094786 + AT_rich Low_complexity Low_complexity 1 24 0 2922 156 35 22 chr6 21184965 21185504 -168094050 + MER44D DNA MER2_type 4 604 -1 23 54 0 0 chr6 21186017 21186054 -168093500 + AT_rich Low_complexity Low_complexity 1 37 0 254 331 225 0 chr6 21186550 21186719 -168092835 - MIR SINE MIR -51 211 5 41403 42 4 3 chr6 21186899 21193051 -168086503 + L1PA4 LINE L1 3 6155 0 252 0 0 0 chr6 21193169 21193197 -168086357 + (A)n Simple_repeat Simple_repeat 1 28 0 437 259 189 5 chr6 21193270 21193482 -168086072 - MIR SINE MIR -1 261 11 630 254 82 37 chr6 21194082 21194436 -168085118 - L1MC4a LINE L1 -1865 5943 5574 315 259 85 37 chr6 21194664 21194853 -168084701 - L1MC4a LINE L1 -2260 5548 5351 999 316 116 42 chr6 21195326 21195899 -168083655 - L1MC4a LINE L1 -1703 4443 3914 4471 171 29 16 chr6 21195899 21196810 -168082744 - L1MA10 LINE L1 -7 6327 5406 999 316 116 42 chr6 21196810 21197338 -168082216 - L1MC4a LINE L1 -2232 3914 3261 820 285 88 0 chr6 21197435 21197698 -168081856 - MER58 DNA MER1_type -54 2366 2 515 301 49 24 chr6 21199590 21199836 -168079718 - MLT1I LTR MaLR -1 408 157 1508 228 55 36 chr6 21200493 21201120 -168078434 + L1MCc LINE L1 993 1634 -4851 782 173 7 0 chr6 21201120 21201259 -168078295 - MLT1B LTR MaLR 0 390 251 2982 258 73 22 chr6 21201315 21203749 -168075805 + L1MCc LINE L1 1647 4375 -2566 2676 287 58 14 chr6 21203788 21204684 -168074870 + L1M4b LINE L1 13 947 -5912 23565 144 24 39 chr6 21204696 21209419 -168070135 + L1PA8 LINE L1 12 4661 -1485 6749 68 7 6 chr6 21209419 21210690 -168068864 + L1PA8 LINE L1 4909 6161 -11 2074 246 75 46 chr6 21210707 21212294 -168067260 + L1M4b LINE L1 936 2703 -4435 430 204 53 9 chr6 21212557 21212670 -168066884 + L1M4 LINE L1 1446 1563 -5292 2302 83 0 23 chr6 21212717 21213019 -168066535 + AluY SINE Alu 1 295 -16 41726 41 2 1 chr6 21213019 21219163 -168060391 + L1PA4 LINE L1 2 6152 -3 1602 249 62 50 chr6 21219198 21219726 -168059828 + L1M4 LINE L1 1642 2162 -4795 2266 116 0 0 chr6 21219726 21220037 -168059517 + AluSx SINE Alu 1 311 -1 1602 249 62 50 chr6 21220037 21221149 -168058405 + L1M4 LINE L1 2162 3383 -3574 1269 209 28 56 chr6 21221151 21221581 -168057973 - L1M4 LINE L1 -3127 3019 2602 * 1326 221 26 5 chr6 21221579 21221960 -168057594 + L1M4 LINE L1 4200 4588 -2369 831 211 67 61 chr6 21221957 21222079 -168057475 + L1MD3 LINE L1 7680 7800 -195 * 1976 117 0 38 chr6 21222079 21222420 -168057134 + AluSg SINE Alu 1 330 0 831 211 67 61 chr6 21222420 21222608 -168056946 + L1MD3 LINE L1 7800 7993 -2 251 239 0 54 chr6 21222724 21222816 -168056738 + L1ME3A LINE L1 6026 6112 -58 891 296 110 27 chr6 21223202 21223749 -168055805 - MLT1L LTR MaLR -13 602 11 266 229 90 35 chr6 21223799 21223943 -168055611 - L1M4 LINE L1 -2079 4067 3916 464 290 46 10 chr6 21225042 21225262 -168054292 - L1MC/D LINE L1 -460 5661 5468 272 333 80 26 chr6 21226612 21227077 -168052477 + HAL1 LINE L1 1171 1660 -847 207 0 0 0 chr6 21227369 21227392 -168052162 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 231 341 111 8 chr6 21228251 21228377 -168051177 + MIR3 SINE MIR 62 200 -8 814 252 33 19 chr6 21228781 21228991 -168050563 - MIR SINE MIR -10 252 40 2266 107 0 0 chr6 21229212 21229502 -168050052 - AluSc SINE Alu -19 290 1 486 341 153 0 chr6 21231031 21231254 -168048300 - MIR SINE MIR -1 261 5 645 289 154 60 chr6 21231683 21232321 -168047233 - L2 LINE L2 -8 3305 2593 901 339 40 2 chr6 21232321 21232716 -168046838 - L2 LINE L2 -971 2343 1934 1808 76 13 0 chr6 21233131 21233356 -168046198 + AluY SINE Alu 83 310 -1 263 233 17 0 chr6 21233507 21233567 -168045987 - MLT1J LTR MaLR -313 198 138 301 310 39 31 chr6 21233828 21233957 -168045597 + L2 LINE L2 2927 3056 -216 5238 253 41 9 chr6 21234554 21236044 -168043510 + L1MB3 LINE L1 68 1438 -5411 2679 197 44 2 chr6 21236069 21236687 -168042867 + L1MB3 LINE L1 2192 2835 -4014 873 196 64 46 chr6 21236688 21236969 -168042585 + pTR5 LTR ERV1 743 1028 -1410 5247 82 88 36 chr6 21237048 21237833 -168041721 + LTR12 LTR ERV1 1 826 0 27561 93 7 9 chr6 21237833 21242700 -168036854 + HERV9 LTR ERV1 1 4944 -3455 2286 155 167 52 chr6 21242701 21243508 -168036046 + Harlequin LTR ERV1 840 1739 -5157 * 5392 84 16 0 chr6 21243507 21244299 -168035255 + Harlequin LTR ERV1 504 8399 0 1418 224 19 0 chr6 21244309 21244630 -168034924 + L1MB5 LINE L1 5838 6164 -10 1154 167 53 30 chr6 21244630 21244869 -168034685 - L1M4 LINE L1 -664 5510 5257 2398 59 7 13 chr6 21244869 21245174 -168034380 + AluY SINE Alu 1 303 -8 1154 167 53 30 chr6 21245174 21245375 -168034179 - L1M4 LINE L1 -917 5257 5062 488 291 73 23 chr6 21245375 21245595 -168033959 + LTR16C LTR ERVL 261 491 0 1401 232 140 7 chr6 21245820 21246256 -168033298 - LTR54B LTR ERV1 0 498 5 236 232 174 29 chr6 21247908 21247977 -168031577 + MIR SINE MIR 46 124 -84 397 176 71 88 chr6 21248625 21248807 -168030747 + MER104 DNA MER2_type 2 180 0 441 260 8 41 chr6 21249265 21249388 -168030166 + MER5B DNA MER1_type 1 119 -59 5882 229 37 25 chr6 21249420 21250604 -168028950 + L1MB3 LINE L1 4055 5270 -1578 2433 140 20 8 chr6 21250604 21250997 -168028557 + L1PA15 LINE L1 5767 6164 -1 5882 229 37 25 chr6 21250997 21251633 -168027921 + L1MB3 LINE L1 5270 5897 -951 344 198 19 3 chr6 21251633 21251850 -168027704 + AluJo SINE Alu 1 289 -13 4621 157 17 31 chr6 21251864 21252870 -168026684 + L1MB3 LINE L1 5889 6881 -4 217 167 71 0 chr6 21252890 21252932 -168026622 + MER5B DNA MER1_type 131 175 -3 411 199 333 0 chr6 21253119 21253260 -168026294 - MER5A DNA MER1_type 0 189 2 341 290 10 10 chr6 21253322 21253422 -168026132 - MIR SINE MIR -79 129 30 22 0 0 0 chr6 21253525 21253547 -168026007 + AT_rich Low_complexity Low_complexity 1 22 0 453 274 38 43 chr6 21254099 21254285 -168025269 - MIR SINE MIR -3 259 75 2190 93 49 41 chr6 21254395 21254441 -168025113 - THE1C LTR MaLR -6 369 325 2568 56 0 0 chr6 21254441 21254746 -168024808 - AluY SINE Alu -5 306 2 2190 93 49 41 chr6 21254746 21255065 -168024489 - THE1C LTR MaLR -50 325 1 959 245 37 8 chr6 21255212 21255453 -168024101 + MIR SINE MIR 15 262 0 3556 151 27 0 chr6 21257192 21257780 -168021774 - MER6A DNA MER2_type -1 604 1 434 238 119 54 chr6 21258401 21258569 -168020985 - MIR3 SINE MIR -25 183 5 224 341 8 0 chr6 21258629 21258723 -168020831 + MIR SINE MIR 53 148 -60 243 0 0 0 chr6 21259921 21259948 -168019606 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 307 224 13 0 chr6 21260951 21261027 -168018527 - MIR3 SINE MIR -7 201 125 923 284 68 65 chr6 21261740 21262327 -168017227 + MLT1L LTR MaLR 8 596 -19 2437 75 0 10 chr6 21262430 21262736 -168016818 + AluY SINE Alu 1 303 -8 1583 100 0 38 chr6 21263356 21263595 -168015959 + MER30 DNA MER1_type 1 230 0 269 286 71 0 chr6 21263664 21263734 -168015820 - L2 LINE L2 0 3272 3198 24 32 0 0 chr6 21264583 21264614 -168014940 + AT_rich Low_complexity Low_complexity 1 31 0 224 30 30 0 chr6 21265007 21265040 -168014514 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 343 292 133 10 chr6 21265995 21266190 -168013364 - LTR33A LTR ERVL -1 522 304 22 0 0 0 chr6 21267167 21267189 -168012365 + AT_rich Low_complexity Low_complexity 1 22 0 2159 110 0 0 chr6 21267272 21267586 -168011968 - AluSx SINE Alu 0 317 4 208 139 0 0 chr6 21267651 21267687 -168011867 + (TTTTTG)n Simple_repeat Simple_repeat 4 39 0 422 301 83 13 chr6 21268345 21268574 -168010980 + MLT1L LTR MaLR 371 615 0 252 0 0 0 chr6 21268833 21268861 -168010693 + (TTG)n Simple_repeat Simple_repeat 2 29 0 288 0 0 0 chr6 21270169 21270201 -168009353 + (CA)n Simple_repeat Simple_repeat 2 33 0 2177 149 29 0 chr6 21271772 21272155 -168007399 + MER57A LTR ERV1 4 397 -6 219 36 0 0 chr6 21272156 21272184 -168007370 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2149 113 0 0 chr6 21272952 21273268 -168006286 + AluSx SINE Alu 1 316 0 37 32 0 16 chr6 21273325 21273343 -168006211 + AT_rich Low_complexity Low_complexity 1 18 -43 1701 167 15 18 chr6 21273343 21273673 -168005881 + L1MC1 LINE L1 6003 6331 -2 37 32 0 16 chr6 21273673 21273716 -168005838 + AT_rich Low_complexity Low_complexity 18 61 0 2347 107 3 0 chr6 21273921 21274229 -168005325 - AluSq SINE Alu -2 311 3 528 194 73 103 chr6 21274802 21274950 -168004604 + L1MC4 LINE L1 7612 7763 -279 2200 110 10 0 chr6 21274950 21275249 -168004305 - AluSq SINE Alu -11 302 1 528 194 73 103 chr6 21275249 21275429 -168004125 + L1MC4 LINE L1 7763 7930 -112 297 240 16 50 chr6 21275475 21275596 -168003958 + L1MC4 LINE L1 7926 8042 0 365 277 7 14 chr6 21275607 21275755 -168003799 + L1MC5 LINE L1 7769 7915 -46 1954 149 128 10 chr6 21275764 21276147 -168003407 + MSTA LTR MaLR 1 428 0 201 74 0 0 chr6 21276156 21276183 -168003371 + (T)n Simple_repeat Simple_repeat 1 27 0 2062 171 6 43 chr6 21276492 21276960 -168002594 + L1MB3 LINE L1 5730 6180 -3 2223 121 68 39 chr6 21277061 21277145 -168002409 + L1MA4A LINE L1 5867 5947 -356 2249 70 18 0 chr6 21277145 21277429 -168002125 + AluY SINE Alu 1 289 -22 2223 121 68 39 chr6 21277429 21277758 -168001796 + L1MA4A LINE L1 5947 6292 -11 207 0 0 0 chr6 21278288 21278311 -168001243 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 2444 89 3 0 chr6 21278995 21279299 -168000255 - AluSq SINE Alu -8 305 1 261 0 0 0 chr6 21279483 21279512 -168000042 + (TG)n Simple_repeat Simple_repeat 1 29 0 199 291 154 34 chr6 21279796 21279913 -167999641 - L2 LINE L2 -4 3268 3138 1636 184 53 26 chr6 21280115 21280495 -167999059 - MLT1B LTR MaLR 0 390 1 247 311 126 29 chr6 21280579 21280785 -167998769 - L2 LINE L2 -652 2662 2437 295 320 26 57 chr6 21280845 21281012 -167998542 + MIR SINE MIR 15 176 -71 2151 101 3 3 chr6 21281346 21281634 -167997920 + AluSq SINE Alu 1 288 -25 315 321 60 30 chr6 21281652 21281820 -167997734 + L3b LINE CR1 1216 1388 -195 2027 167 0 13 chr6 21281834 21282012 -167997542 + MLT1B LTR MaLR 1 180 -210 2354 95 3 25 chr6 21282012 21282328 -167997226 + AluSp SINE Alu 1 309 -4 2027 167 0 13 chr6 21282328 21282532 -167997022 + MLT1B LTR MaLR 180 378 -12 380 20 20 0 chr6 21283401 21283450 -167996104 + (GA)n Simple_repeat Simple_repeat 1 50 0 276 296 20 0 chr6 21283639 21283737 -167995817 + MER94 DNA DNA 1 100 -34 461 263 164 84 chr6 21283760 21284174 -167995380 - L3 LINE CR1 -342 1235 789 915 276 71 0 chr6 21284271 21284510 -167995044 - MIR SINE MIR -1 261 6 1996 128 4 0 chr6 21284543 21284824 -167994730 - AluSg SINE Alu -28 282 1 224 167 45 76 chr6 21284824 21284890 -167994664 - L3 LINE CR1 -915 662 599 186 206 0 0 chr6 21284977 21285011 -167994543 - L3 LINE CR1 -1121 456 423 819 129 25 24 chr6 21285116 21285421 -167994133 + CT-rich Low_complexity Low_complexity 1 305 0 22 0 0 0 chr6 21286125 21286147 -167993407 + AT_rich Low_complexity Low_complexity 1 22 0 183 156 0 0 chr6 21286889 21286921 -167992633 + (TG)n Simple_repeat Simple_repeat 1 32 0 197 65 32 0 chr6 21287106 21287137 -167992417 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 493 242 17 42 chr6 21287328 21287448 -167992106 - L2 LINE L2 -1 3271 3155 503 229 46 8 chr6 21287880 21288011 -167991543 + MER45A DNA AcHobo 43 178 0 563 336 22 22 chr6 21288370 21288599 -167990955 + MIR SINE MIR 21 249 -13 28 0 0 0 chr6 21289460 21289488 -167990066 + AT_rich Low_complexity Low_complexity 1 28 0 287 343 116 17 chr6 21289512 21289693 -167989861 - MIR SINE MIR -45 217 19 23 0 0 0 chr6 21290860 21290883 -167988671 + AT_rich Low_complexity Low_complexity 1 23 0 771 277 81 24 chr6 21290906 21291202 -167988352 + L2 LINE L2 3000 3312 -1 285 29 0 0 chr6 21292587 21292621 -167986933 + (CA)n Simple_repeat Simple_repeat 2 35 0 200 217 22 0 chr6 21293154 21293200 -167986354 - L2 LINE L2 -5 3308 3262 216 0 0 0 chr6 21294483 21294507 -167985047 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 477 0 0 0 chr6 21294506 21294559 -167984995 + (TG)n Simple_repeat Simple_repeat 2 54 0 278 304 38 0 chr6 21295123 21295202 -167984352 - MER5A DNA MER1_type 0 189 108 1799 112 4 0 chr6 21295548 21295816 -167983738 - L1PA14 LINE L1 -2 6159 5891 277 333 10 0 chr6 21295816 21295912 -167983642 + L2 LINE L2 2461 2557 -757 638 297 50 18 chr6 21295948 21296170 -167983384 - L2 LINE L2 -422 2892 2664 2254 123 0 3 chr6 21296741 21297051 -167982503 + AluSx SINE Alu 1 309 -3 1469 112 0 42 chr6 21298274 21298488 -167981066 - AluSx SINE Alu -13 297 93 2108 20 4 0 chr6 21298505 21298750 -167980804 - L1PA3 LINE L1 -4 6151 5906 806 97 0 0 chr6 21298750 21298853 -167980701 - AluSx SINE Alu -210 103 1 195 265 118 59 chr6 21299215 21299317 -167980237 - MIR3 SINE MIR -86 122 15 195 42 0 0 chr6 21299400 21299424 -167980130 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1283 96 36 153 chr6 21299426 21299583 -167979971 - L1PA15 LINE L1 -13 6152 6045 2576 48 3 0 chr6 21299583 21299892 -167979662 - AluY SINE Alu -1 310 1 1283 96 36 153 chr6 21299892 21300035 -167979519 - L1PA15 LINE L1 -120 6045 5887 359 316 142 9 chr6 21300618 21300830 -167978724 - MIR SINE MIR -19 243 4 2108 106 0 7 chr6 21301569 21301883 -167977671 + AluSx SINE Alu 1 312 0 197 211 18 0 chr6 21301972 21302029 -167977525 + CT-rich Low_complexity Low_complexity 2 59 0 484 150 0 0 chr6 21302275 21302355 -167977199 - MADE1 DNA Mariner 0 80 1 391 190 0 20 chr6 21303078 21303178 -167976376 + GA-rich Low_complexity Low_complexity 2 99 0 243 264 0 0 chr6 21303178 21303231 -167976323 + A-rich Low_complexity Low_complexity 1 53 0 2025 147 0 7 chr6 21303607 21303913 -167975641 - AluSx SINE Alu 0 312 9 21 0 0 0 chr6 21304209 21304230 -167975324 + AT_rich Low_complexity Low_complexity 1 21 0 394 278 70 48 chr6 21305138 21305352 -167974202 - MIR SINE MIR -43 219 8 513 319 21 48 chr6 21306324 21306759 -167972795 - L1MEc LINE L1 -4745 1651 1229 823 214 0 18 chr6 21307119 21307287 -167972267 - FRAM SINE Alu 0 166 2 272 291 12 35 chr6 21307925 21308011 -167971543 - MIR3 SINE MIR -4 204 121 2459 90 0 0 chr6 21308206 21308518 -167971036 + AluSx SINE Alu 1 312 0 1600 234 55 39 chr6 21308664 21309360 -167970194 + L1MB8 LINE L1 875 1581 -4961 397 211 11 11 chr6 21309349 21309444 -167970110 + L1MB8 LINE L1 1987 2081 -4565 * 1732 248 45 41 chr6 21309478 21309560 -167969994 + L1MB8 LINE L1 3192 3272 -3372 2121 107 0 10 chr6 21309560 21309851 -167969703 + AluY SINE Alu 6 293 -18 1732 248 45 41 chr6 21309851 21310618 -167968936 + L1MB8 LINE L1 3272 4044 -2600 2075 118 3 0 chr6 21310637 21311104 -167968450 + AluY SINE Alu 23 490 0 879 183 0 6 chr6 21310924 21311140 -167968414 + GA-rich Low_complexity Low_complexity 1 215 0 3153 212 57 88 chr6 21311140 21311551 -167968003 + L1MB8 LINE L1 4060 4482 -2162 760 102 0 0 chr6 21311551 21311649 -167967905 + AluY SINE Alu 7 104 -207 3153 212 57 88 chr6 21311649 21312411 -167967143 + L1MB8 LINE L1 4482 5291 -1353 1328 244 13 16 chr6 21312413 21312724 -167966830 + Tigger5 DNA MER2_type 1 310 -2013 397 176 0 35 chr6 21312706 21312791 -167966763 + Tigger5 DNA MER2_type 2242 2323 0 * 1339 239 84 9 chr6 21312797 21313236 -167966318 + L1MB8 LINE L1 5298 5769 -875 511 286 0 28 chr6 21313240 21313608 -167965946 + (CATATA)n Simple_repeat Simple_repeat 1 357 0 436 268 0 91 chr6 21313564 21313762 -167965792 + (CATA)n Simple_repeat Simple_repeat 1 180 0 * 261 174 59 0 chr6 21313775 21313840 -167965714 + L1MB8 LINE L1 5754 5826 -846 2516 74 0 0 chr6 21313840 21314151 -167965403 + AluY SINE Alu 1 311 0 3220 224 43 3 chr6 21315195 21316045 -167963509 + L1MB8 LINE L1 5784 6667 -9 1590 235 24 17 chr6 21316047 21316460 -167963094 - LTR52 LTR ERVL -3 418 3 2179 136 3 0 chr6 21316745 21317055 -167962499 + AluSx SINE Alu 1 311 -1 209 276 69 0 chr6 21317806 21317864 -167961690 + MIR SINE MIR 92 153 -109 228 215 165 0 chr6 21318446 21318525 -167961029 + MLT1L LTR MaLR 507 598 -17 236 293 71 20 chr6 21318787 21318886 -167960668 + L3 LINE CR1 1300 1403 -174 2188 121 0 3 chr6 21319516 21319823 -167959731 + AluSq SINE Alu 1 306 -7 541 223 127 91 chr6 21319848 21319938 -167959616 - MIR SINE MIR -53 209 124 2170 109 0 0 chr6 21319938 21320242 -167959312 + L1PA11 LINE L1 5871 6174 0 541 223 127 91 chr6 21320242 21320348 -167959206 - MIR SINE MIR -138 124 6 257 398 6 12 chr6 21321019 21321180 -167958374 - L3b LINE CR1 -135 1448 1289 220 326 32 11 chr6 21321238 21321333 -167958221 + MIR3 SINE MIR 109 205 -3 2233 137 8 30 chr6 21321960 21322332 -167957222 - THE1B LTR MaLR 0 364 1 336 298 138 58 chr6 21324282 21324507 -167955047 - MIR SINE MIR 0 262 20 226 369 70 5 chr6 21324763 21324977 -167954577 - MLT1J1 LTR MaLR -126 320 93 379 346 14 13 chr6 21325221 21325432 -167954122 + MIR SINE MIR 9 217 -45 200 263 0 0 chr6 21325821 21325859 -167953695 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 255 241 13 13 chr6 21326192 21326271 -167953283 + L1MD2 LINE L1 6269 6347 -12 372 141 20 10 chr6 21326275 21326374 -167953180 + (TA)n Simple_repeat Simple_repeat 1 100 0 2088 117 0 20 chr6 21326377 21326675 -167952879 - AluSx SINE Alu -20 292 1 180 300 0 0 chr6 21327066 21327116 -167952438 - L2 LINE L2 -9 3263 3214 30 27 0 0 chr6 21327954 21327991 -167951563 + AT_rich Low_complexity Low_complexity 1 37 0 869 294 128 27 chr6 21328390 21328992 -167950562 + MLT2F LTR ERVL 1 663 0 246 345 150 0 chr6 21329317 21329430 -167950124 - MIR SINE MIR -61 147 18 223 250 0 0 chr6 21329912 21329964 -167949590 + A-rich Low_complexity Low_complexity 4 55 0 870 283 92 27 chr6 21329979 21330392 -167949162 - LTR16A LTR ERVL -2 455 16 1210 368 57 15 chr6 21330627 21331722 -167947832 - HERV16 LTR ERVL -480 5284 4144 1833 294 69 35 chr6 21331728 21332507 -167947047 - HERV16 LTR ERVL -2619 2377 1572 2718 316 50 8 chr6 21332706 21333874 -167945680 - HERV16 LTR ERVL -3710 1286 70 682 350 18 35 chr6 21333997 21334067 -167945487 - LTR16A LTR ERVL -6 444 374 1105 280 30 59 chr6 21334067 21334542 -167945012 + LTR16B LTR ERVL 4 464 0 682 350 18 35 chr6 21334542 21334871 -167944683 - LTR16A LTR ERVL -76 374 52 244 319 98 12 chr6 21335377 21335540 -167944014 - MIR SINE MIR -52 210 34 210 71 0 0 chr6 21337197 21337225 -167942329 + (GGAAA)n Simple_repeat Simple_repeat 3 30 0 488 298 29 35 chr6 21337695 21337866 -167941688 - MIR SINE MIR -18 244 75 254 248 67 60 chr6 21338364 21338513 -167941041 + HERV16 LTR ERVL 1585 1734 -3262 * 1401 311 32 28 chr6 21338510 21339398 -167940156 + HERV16 LTR ERVL 2524 3423 -1930 759 307 62 42 chr6 21339427 21339994 -167939560 + HERV16 LTR ERVL 3211 3788 -1208 560 319 53 43 chr6 21340116 21340566 -167938988 + HERV16 LTR ERVL 4152 4384 -612 1112 294 23 37 chr6 21341353 21341782 -167937772 + LTR16B LTR ERVL 34 456 -8 2384 86 3 0 chr6 21342425 21342729 -167936825 + AluSp SINE Alu 1 305 -8 338 236 64 29 chr6 21343097 21343237 -167936317 + MLT1H LTR MaLR 405 549 0 588 312 9 0 chr6 21343462 21343683 -167935871 - L1MC4a LINE L1 -1890 5918 5696 341 311 94 15 chr6 21345709 21345901 -167933653 - MIR SINE MIR -7 255 34 2446 72 3 13 chr6 21346744 21347050 -167932504 - AluSp SINE Alu 0 313 11 268 301 96 37 chr6 21347132 21347268 -167932286 - MIR3 SINE MIR -61 147 4 4564 150 39 21 chr6 21349543 21350512 -167929042 + L1PB3 LINE L1 4522 5529 -625 2126 147 0 0 chr6 21350512 21350811 -167928743 + AluSq SINE Alu 1 299 -14 4564 150 39 21 chr6 21350811 21351442 -167928112 + L1PB3 LINE L1 5529 6147 -7 348 125 16 0 chr6 21352242 21352306 -167927248 + MADE1 DNA Mariner 1 65 -15 191 323 37 49 chr6 21353619 21353783 -167925771 + MIR SINE MIR 99 260 -2 316 308 0 0 chr6 21354442 21354546 -167925008 + (TA)n Simple_repeat Simple_repeat 2 105 0 2768 237 68 6 chr6 21354612 21355635 -167923919 - L1ME2 LINE L1 -39 6125 5035 1250 242 31 31 chr6 21355645 21356124 -167923430 - L1ME2 LINE L1 -1286 4860 4382 1651 172 9 46 chr6 21357587 21357936 -167921618 - MLT1A1 LTR MaLR 0 365 30 4917 105 3 16 chr6 21357938 21358616 -167920938 - L1PA11 LINE L1 -14 6160 5492 2486 81 0 0 chr6 21358616 21358924 -167920630 - AluY SINE Alu -3 308 1 4917 105 3 16 chr6 21358924 21359006 -167920548 - L1PA11 LINE L1 -682 5492 5410 233 163 0 20 chr6 21359006 21359055 -167920499 - MLT1A1 LTR MaLR -319 55 8 188 146 0 21 chr6 21359895 21359943 -167919611 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 670 180 8 0 chr6 21360295 21360417 -167919137 - Tigger1 DNA MER2_type 0 2418 2296 4315 138 26 0 chr6 21360417 21361115 -167918439 + L1PA16 LINE L1 5442 6157 -9 8525 128 28 10 chr6 21361149 21361850 -167917704 - Tigger1 DNA MER2_type -980 1438 751 2023 129 0 7 chr6 21361850 21362145 -167917409 + AluSg SINE Alu 3 295 -15 8525 128 28 10 chr6 21362145 21362854 -167916700 - Tigger1 DNA MER2_type -1667 751 2 413 333 22 7 chr6 21362981 21363116 -167916438 + MIR3 SINE MIR 6 142 -66 552 205 0 0 chr6 21363585 21363697 -167915857 + MER45B DNA AcHobo 61 172 -868 933 232 82 38 chr6 21363697 21364038 -167915516 - MLT1A1 LTR MaLR 0 365 10 2005 210 48 42 chr6 21364051 21364594 -167914960 + MER45B DNA AcHobo 173 718 -322 285 250 230 0 chr6 21364602 21364702 -167914852 + MER5A DNA MER1_type 64 186 -3 231 170 0 0 chr6 21364740 21364787 -167914767 + GA-rich Low_complexity Low_complexity 1 47 0 2640 45 0 3 chr6 21365482 21365794 -167913760 - AluY SINE Alu 0 311 1 233 97 81 0 chr6 21366867 21366929 -167912625 + (TA)n Simple_repeat Simple_repeat 2 68 0 37010 73 8 1 chr6 21366979 21371919 -167907635 - HERVL-A1 LTR ERVL -682 4972 1 294 48 0 24 chr6 21371919 21371961 -167907593 - MLT2A1 LTR ERVL 0 453 413 404 24 72 12 chr6 21371963 21372046 -167907508 + (TA)n Simple_repeat Simple_repeat 1 88 0 1527 80 46 8 chr6 21372071 21372308 -167907246 - MLT2A1 LTR ERVL -198 246 1 197 388 140 9 chr6 21373168 21373604 -167905950 + L2 LINE L2 1972 2464 -850 * 399 341 30 0 chr6 21373601 21373733 -167905821 + L2 LINE L2 3137 3272 0 221 308 113 15 chr6 21374268 21374401 -167905153 + L2 LINE L2 3153 3298 -15 6676 111 13 25 chr6 21374548 21375850 -167903704 + L1MA1 LINE L1 5016 6301 -1 431 309 73 30 chr6 21377284 21377517 -167902037 - MIR SINE MIR 0 262 20 2232 105 7 0 chr6 21377567 21377861 -167901693 - AluSg SINE Alu -14 296 1 291 362 9 0 chr6 21378341 21378446 -167901108 - L2 LINE L2 -16 3297 3192 443 235 279 7 chr6 21379766 21380046 -167899508 - MLT1G3 LTR MaLR -7 535 142 1376 186 16 8 chr6 21380046 21380299 -167899255 - MLT1E1 LTR MaLR 0 654 400 2207 102 0 0 chr6 21380388 21380671 -167898883 + AluSc SINE Alu 1 283 -26 207 0 0 0 chr6 21380675 21380698 -167898856 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3211 182 50 47 chr6 21380701 21380842 -167898712 - L1MB7 LINE L1 -11 6173 6034 2009 147 0 13 chr6 21380842 21381142 -167898412 - AluSx SINE Alu -16 296 1 3211 182 50 47 chr6 21381142 21382259 -167897295 - L1MB7 LINE L1 -150 6034 4905 806 226 53 23 chr6 21382260 21382525 -167897029 - MLT1E1 LTR MaLR -379 275 3 281 356 19 6 chr6 21382541 21382701 -167896853 - MLT1G3 LTR MaLR -393 162 1 2013 157 0 3 chr6 21382741 21383047 -167896507 - AluSx SINE Alu -3 309 5 26 0 0 0 chr6 21383672 21383698 -167895856 + AT_rich Low_complexity Low_complexity 1 26 0 290 165 0 35 chr6 21383778 21383863 -167895691 + CT-rich Low_complexity Low_complexity 1 82 0 221 241 0 0 chr6 21384021 21384079 -167895475 + A-rich Low_complexity Low_complexity 5 62 0 10902 164 20 27 chr6 21384373 21387084 -167892470 - L1P4 LINE L1 -359 5809 3126 2032 127 0 0 chr6 21387084 21387359 -167892195 - AluSq SINE Alu -38 275 1 10902 164 20 27 chr6 21387359 21387565 -167891989 - L1P4 LINE L1 -3042 3126 2920 2059 39 47 4 chr6 21387565 21387819 -167891735 + AluY SINE Alu 34 298 -13 1716 207 10 0 chr6 21388250 21388554 -167891000 - AluJb SINE Alu -5 307 1 2120 4 0 0 chr6 21388564 21388790 -167890764 - AluYa5 SINE Alu -10 301 76 366 312 7 36 chr6 21388790 21388928 -167890626 - MIR SINE MIR -63 199 66 1166 265 32 40 chr6 21388949 21389545 -167890009 - Charlie7 DNA MER1_type -33 2579 1989 1902 233 106 106 chr6 21389545 21390336 -167889218 + L1MCa LINE L1 1 790 -5255 2088 160 14 8 chr6 21390336 21390699 -167888855 - MLT1A1 LTR MaLR 0 365 1 1902 233 106 106 chr6 21390699 21390830 -167888724 + L1MCa LINE L1 790 919 -5126 4292 118 5 2 chr6 21390830 21391440 -167888114 - LTR9 LTR ERV1 0 612 1 1902 233 106 106 chr6 21391440 21391717 -167887837 + L1MCa LINE L1 919 1173 -4872 2147 130 0 25 chr6 21392208 21392524 -167887030 + AluSx SINE Alu 1 308 -4 319 247 0 0 chr6 21392687 21392760 -167886794 + MLT1I LTR MaLR 71 143 -266 358 250 19 10 chr6 21392882 21392986 -167886568 + MLT1I LTR MaLR 305 409 0 341 48 0 0 chr6 21394084 21394126 -167885428 - L1PA7 LINE L1 -11 6143 6102 5027 63 2 3 chr6 21394150 21394788 -167884766 - L1PA7 LINE L1 -11 6143 5507 280 295 158 86 chr6 21395091 21395325 -167884229 - L2 LINE L2 -27 3245 2995 23 0 0 0 chr6 21395383 21395406 -167884148 + AT_rich Low_complexity Low_complexity 1 23 0 874 54 9 0 chr6 21395407 21395519 -167884035 - L1PA5 LINE L1 -9 6145 6033 2469 52 0 0 chr6 21395519 21395843 -167883711 + L1PA4 LINE L1 5646 5969 -186 451 206 14 99 chr6 21395904 21396045 -167883509 + MER3 DNA MER1_type 1 129 -80 185 62 0 31 chr6 21396045 21396077 -167883477 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 317 319 66 30 chr6 21396184 21396350 -167883204 - L2 LINE L2 -508 2806 2635 2250 105 0 0 chr6 21399312 21399597 -167879957 + AluSg SINE Alu 1 285 -25 1512 49 25 0 chr6 21399621 21399824 -167879730 - L1PA10 LINE L1 -187 5981 5774 198 0 0 0 chr6 21399835 21399857 -167879697 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 27 0 0 0 chr6 21399997 21400024 -167879530 + AT_rich Low_complexity Low_complexity 1 27 0 1734 168 4 4 chr6 21400028 21400308 -167879246 + AluJb SINE Alu 6 285 -27 279 300 73 0 chr6 21400517 21400667 -167878887 - L1ME4a LINE L1 -81 6040 5880 1404 289 162 11 chr6 21400855 21401514 -167878040 - L2 LINE L2 0 3313 2755 2390 70 0 13 chr6 21401514 21401816 -167877738 + AluY SINE Alu 1 298 -13 1404 289 162 11 chr6 21401816 21401955 -167877599 - L2 LINE L2 -558 2755 2638 1974 164 65 25 chr6 21401955 21402357 -167877197 - MER47B DNA MER2_type 0 418 1 1404 289 162 11 chr6 21402357 21402543 -167877011 - L2 LINE L2 -675 2638 2172 659 66 0 11 chr6 21402820 21402911 -167876643 + 5S rRNA rRNA 1 90 -31 23 86 0 0 chr6 21404222 21404280 -167875274 + AT_rich Low_complexity Low_complexity 1 58 0 293 322 34 7 chr6 21404401 21404547 -167875007 - MIR SINE MIR -46 216 67 1551 207 21 3 chr6 21404551 21404880 -167874674 - MER58B DNA MER1_type -6 335 1 3237 198 59 36 chr6 21456068 21457004 -167822550 - L1MB2 LINE L1 -18 6389 5434 6404 226 65 24 chr6 21457024 21457815 -167821739 - L1MB2 LINE L1 -1073 5309 4552 321 26 0 0 chr6 21457815 21457853 -167821701 + (TG)n Simple_repeat Simple_repeat 2 39 0 6404 226 65 24 chr6 21457853 21459121 -167820433 - L1MB2 LINE L1 -1830 4552 3164 6700 192 17 4 chr6 21459123 21461191 -167818363 - L1PA13 LINE L1 0 6814 4714 1693 104 0 0 chr6 21461191 21461412 -167818142 - AluY SINE Alu -25 286 66 6700 192 17 4 chr6 21461412 21461482 -167818072 - L1PA13 LINE L1 -2100 4714 4646 235 100 25 0 chr6 21461482 21461522 -167818032 - MLT2A1 LTR ERVL -7 437 397 192 200 0 0 chr6 21461522 21461562 -167817992 + (TG)n Simple_repeat Simple_repeat 2 41 0 2893 78 4 13 chr6 21461562 21461977 -167817577 - MLT2A1 LTR ERVL -40 480 1 11264 204 16 22 chr6 21461978 21462464 -167817090 - L1PA13 LINE L1 -2141 4656 4169 186 43 0 0 chr6 21462464 21462487 -167817067 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 11264 204 16 22 chr6 21462487 21465572 -167813982 - L1PA13 LINE L1 -2628 4169 1105 1045 255 10 7 chr6 21465580 21465882 -167813672 - L1MB2 LINE L1 -3220 3162 2860 910 205 100 0 chr6 21465882 21466072 -167813482 + Tigger7 DNA MER2_type 1 209 -496 359 132 51 139 chr6 21466080 21466238 -167813316 - L1MB2 LINE L1 -3850 2532 2378 385 178 0 14 chr6 21466238 21466311 -167813243 + Tigger2 DNA MER2_type 1 72 -2646 * 1268 127 9 9 chr6 21466298 21466519 -167813035 + Tigger2 DNA MER2_type 2273 2493 -225 389 237 0 42 chr6 21466623 21466741 -167812813 - L1 LINE L1 -1257 5125 5013 424 107 12 60 chr6 21466847 21466931 -167812623 - L1P LINE L1 -1370 4776 4697 1028 215 0 0 chr6 21466945 21467164 -167812390 - L1 LINE L1 -1832 4550 4332 1085 196 13 0 chr6 21467165 21467394 -167812160 + Tigger2 DNA MER2_type 2486 2717 -1 2133 262 76 13 chr6 21467395 21468064 -167811490 - L1 LINE L1 -4005 2377 1532 222 37 0 0 chr6 21468064 21468091 -167811463 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 2133 262 76 13 chr6 21468091 21468488 -167811066 - L1 LINE L1 -4850 1532 1161 476 179 41 123 chr6 21468506 21468701 -167810853 + MER58A DNA MER1_type 46 224 0 818 154 0 0 chr6 21468792 21468922 -167810632 + MER1A DNA MER1_type 1 130 -397 1709 130 28 1 chr6 21468924 21469243 -167810311 + THE1B LTR MaLR 3 364 0 10535 101 10 61 chr6 21469243 21470908 -167808646 + THE1B-int LTR MaLR 1 1580 0 1936 148 96 0 chr6 21470908 21471240 -167808314 + THE1B LTR MaLR 1 364 0 2738 117 8 0 chr6 21471240 21471641 -167807913 + MER1A DNA MER1_type 126 529 0 221 377 66 0 chr6 21472276 21472398 -167807156 + MIR3 SINE MIR 43 172 -36 47 53 0 0 chr6 21472715 21472790 -167806764 + AT_rich Low_complexity Low_complexity 1 75 0 346 347 133 28 chr6 21473260 21473782 -167805772 + L2 LINE L2 2724 3313 0 21 36 0 0 chr6 21476007 21476035 -167803519 + AT_rich Low_complexity Low_complexity 1 28 0 2135 117 0 0 chr6 21476072 21476381 -167803173 + AluSx SINE Alu 1 309 0 26 0 0 0 chr6 21476412 21476438 -167803116 + AT_rich Low_complexity Low_complexity 1 26 0 1274 198 124 21 chr6 21476788 21477127 -167802427 + MLT1A2 LTR MaLR 1 374 0 1039 243 18 5 chr6 21478310 21478528 -167801026 + MER58A DNA MER1_type 1 221 -3 5892 99 9 9 chr6 21479890 21480232 -167799322 - L1PB1 LINE L1 -8 6143 5802 317 62 21 0 chr6 21480232 21480280 -167799274 + (TA)n Simple_repeat Simple_repeat 1 49 0 5892 99 9 9 chr6 21480280 21481031 -167798523 - L1PB1 LINE L1 -349 5802 5038 2217 102 3 0 chr6 21481031 21481324 -167798230 - AluSg SINE Alu -11 299 6 5892 99 9 9 chr6 21481324 21481386 -167798168 - L1PB1 LINE L1 -1112 5039 4978 373 310 133 19 chr6 21481442 21481600 -167797954 - MIR SINE MIR -58 204 29 2064 142 3 0 chr6 21481918 21482213 -167797341 + AluSx SINE Alu 1 296 -16 183 355 128 28 chr6 21482279 21482420 -167797134 - L2 LINE L2 -1 3271 3117 2136 102 7 0 chr6 21482424 21482734 -167796820 - AluSx SINE Alu 0 312 1 410 163 0 0 chr6 21482746 21482826 -167796728 + L1MB3 LINE L1 6102 6181 -2 318 182 68 11 chr6 21483315 21483403 -167796151 + MER94 DNA DNA 1 93 -41 189 0 0 0 chr6 21483518 21483539 -167796015 + (TG)n Simple_repeat Simple_repeat 2 22 0 204 299 37 28 chr6 21484420 21484527 -167795027 + MIR SINE MIR 63 170 -92 484 249 107 3 chr6 21484602 21484742 -167794812 + MIR3 SINE MIR 59 208 0 213 39 0 0 chr6 21485190 21485216 -167794338 + (CA)n Simple_repeat Simple_repeat 1 26 0 3011 139 24 71 chr6 21485242 21485823 -167793731 + MLT2B3 LTR ERVL 1 554 0 21 0 0 0 chr6 21485911 21485932 -167793622 + AT_rich Low_complexity Low_complexity 1 21 0 266 308 110 14 chr6 21486332 21486478 -167793076 - L3b LINE CR1 -207 1376 1217 2329 106 3 0 chr6 21486638 21486940 -167792614 + AluSg SINE Alu 1 303 -7 1658 165 73 12 chr6 21487109 21487449 -167792105 + MER46B DNA MER2_type 1 236 0 305 267 38 30 chr6 21488933 21489064 -167790490 + MER94 DNA DNA 1 132 -2 2110 92 11 4 chr6 21489694 21489967 -167789587 + AluSq SINE Alu 23 297 -16 2333 92 0 3 chr6 21490175 21490470 -167789084 + AluSq SINE Alu 1 294 -19 233 224 0 0 chr6 21490727 21490776 -167788778 + L2 LINE L2 3262 3310 -3 205 310 52 60 chr6 21491636 21491752 -167787802 - MIR3 SINE MIR -91 117 3 15295 92 14 16 chr6 21493335 21496176 -167783378 + HERVH LTR ERV1 25 2984 -4729 6034 74 1 2 chr6 21496173 21497028 -167782526 + HERVH LTR ERV1 3140 3993 -3720 * 4020 145 3 3 chr6 21497030 21497692 -167781862 + HERVH LTR ERV1 4488 5149 -2564 1331 121 23 0 chr6 21497693 21497908 -167781646 + HERVH LTR ERV1 5600 5819 -1894 2196 106 48 13 chr6 21497908 21498285 -167781269 + HERVH LTR ERV1 7324 7713 0 2526 87 119 5 chr6 21498285 21498687 -167780867 + LTR7 LTR ERV1 1 448 -2 21 0 0 0 chr6 21499391 21499412 -167780142 + AT_rich Low_complexity Low_complexity 1 21 0 2136 89 7 0 chr6 21500709 21500989 -167778565 + AluSp SINE Alu 13 294 -19 590 250 49 12 chr6 21501247 21501411 -167778143 - MIR SINE MIR -80 182 13 200 309 22 81 chr6 21501496 21501719 -167777835 - L2 LINE L2 -817 2497 2288 281 279 0 67 chr6 21502455 21502559 -167776995 + MER102b DNA MER1_type 236 332 -9 720 235 118 5 chr6 21502617 21502804 -167776750 - MLT1D LTR MaLR 0 505 298 279 0 0 0 chr6 21502880 21502911 -167776643 + (CA)n Simple_repeat Simple_repeat 2 32 0 252 311 131 18 chr6 21503046 21503268 -167776286 + L2 LINE L2 2033 2279 -1035 615 216 0 0 chr6 21503268 21503314 -167776240 + MER3 DNA MER1_type 2 47 -162 314 194 355 0 chr6 21503314 21503438 -167776116 - MER3 DNA MER1_type 0 209 42 234 317 71 107 chr6 21503490 21503771 -167775783 + L2 LINE L2 2963 3233 -39 227 184 0 0 chr6 21505315 21505364 -167774190 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 323 221 142 31 chr6 21507067 21507194 -167772360 + MLT1H LTR MaLR 409 549 0 425 114 0 10 chr6 21507626 21507872 -167771682 + AluSx SINE Alu 1 298 -12 184 354 31 21 chr6 21508017 21508113 -167771441 + MIR SINE MIR 5 101 -161 233 220 0 0 chr6 21508185 21508235 -167771319 + (CAT)n Simple_repeat Simple_repeat 1 50 0 2330 99 3 0 chr6 21509422 21509726 -167769828 + AluSx SINE Alu 1 305 -7 252 402 49 49 chr6 21509914 21510160 -167769394 - L2 LINE L2 0 3272 3027 2416 44 17 10 chr6 21510757 21511053 -167768501 + AluY SINE Alu 1 298 -13 329 359 32 19 chr6 21511357 21511513 -167768041 + MIR3 SINE MIR 37 194 -14 21 0 0 0 chr6 21512611 21512632 -167766922 + AT_rich Low_complexity Low_complexity 1 21 0 1617 183 17 3 chr6 21513325 21513614 -167765940 + AluJo SINE Alu 7 299 -13 2275 114 0 7 chr6 21514335 21514642 -167764912 + AluSx SINE Alu 1 305 -7 202 343 70 47 chr6 21515139 21515311 -167764243 - L2 LINE L2 -185 3087 2912 337 331 135 0 chr6 21515404 21515537 -167764017 + MIR3 SINE MIR 35 185 -23 257 150 0 67 chr6 21515748 21515761 -167763793 - MLT2B1 LTR ERVL 0 520 508 1788 137 68 44 chr6 21515761 21516127 -167763427 + THE1C LTR MaLR 1 375 0 257 150 0 67 chr6 21516127 21516173 -167763381 - MLT2B1 LTR ERVL -12 508 465 339 272 0 22 chr6 21516209 21516301 -167763253 - L1MC4 LINE L1 -1339 6703 6614 326 337 0 0 chr6 21516223 21516318 -167763236 + L1MC4 LINE L1 6614 6708 -1334 * 1253 201 179 128 chr6 21516347 21516800 -167762754 - MLT2B3 LTR ERVL -30 524 1 193 317 77 44 chr6 21516866 21517049 -167762505 + L2 LINE L2 1748 1936 -1378 477 0 0 0 chr6 21517315 21517368 -167762186 + (CAATT)n Simple_repeat Simple_repeat 1 53 0 254 176 39 0 chr6 21517371 21517422 -167762132 - MER21B LTR ERV1 -197 666 614 2393 85 31 8 chr6 21517502 21517855 -167761699 - L1P4 LINE L1 -536 5632 5272 209 326 35 12 chr6 21517991 21518077 -167761477 + MIR SINE MIR 31 118 -90 24 32 0 0 chr6 21518123 21518154 -167761400 + AT_rich Low_complexity Low_complexity 1 31 0 256 322 78 0 chr6 21518218 21518308 -167761246 + L2 LINE L2 3173 3269 -3 249 33 0 0 chr6 21518613 21518643 -167760911 + (TG)n Simple_repeat Simple_repeat 2 31 0 387 320 39 19 chr6 21521133 21521289 -167758265 - MIR3 SINE MIR -11 197 39 245 356 0 19 chr6 21521669 21521773 -167757781 - MIR SINE MIR -142 120 19 255 61 0 0 chr6 21521779 21521812 -167757742 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 635 293 72 31 chr6 21521812 21522130 -167757424 - L2 LINE L2 -13 3300 2970 223 321 116 9 chr6 21522147 21522259 -167757295 - MIR3 SINE MIR -81 127 4 822 254 12 0 chr6 21523131 21523304 -167756250 - MER5A DNA MER1_type -6 183 9 189 0 0 0 chr6 21524689 21524710 -167754844 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 302 0 0 26 chr6 21526343 21526382 -167753172 + (TG)n Simple_repeat Simple_repeat 1 38 0 247 245 0 0 chr6 21526768 21526817 -167752737 + MIR SINE MIR 214 262 0 * 305 322 0 49 chr6 21526811 21526954 -167752600 + L2 LINE L2 3178 3313 0 21 57 0 0 chr6 21526960 21526995 -167752559 + AT_rich Low_complexity Low_complexity 1 35 0 654 276 74 47 chr6 21527861 21528376 -167751178 + L1MEd LINE L1 728 1256 -4863 1017 218 53 84 chr6 21528912 21529292 -167750262 - MLT1A2 LTR MaLR -6 368 1 1520 213 33 96 chr6 21529292 21529460 -167750094 - MLT1A2-int LTR MaLR 0 1735 1558 7435 41 0 2 chr6 21529460 21530791 -167748763 + L1PA5 LINE L1 4825 6154 0 1520 213 33 96 chr6 21530791 21531072 -167748482 - MLT1A2-int LTR MaLR -177 1558 1314 2289 169 20 60 chr6 21531075 21531573 -167747981 - MER66B LTR ERV1 0 486 9 1118 176 126 50 chr6 21531697 21531975 -167747579 - MLT1A2-int LTR MaLR -1072 299 1 287 105 0 35 chr6 21531977 21532034 -167747520 - MLT2B1 LTR ERVL -2 518 464 258 192 0 0 chr6 21532035 21532087 -167747467 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 1191 243 137 44 chr6 21532087 21532116 -167747438 - MLT2B1 LTR ERVL -26 494 469 15604 141 41 14 chr6 21532116 21534758 -167744796 + Tigger2 DNA MER2_type 3 2717 -1 1191 243 137 44 chr6 21534758 21535180 -167744374 - MLT2B1 LTR ERVL -51 469 1 1528 311 46 52 chr6 21535375 21536790 -167742764 + L1M4 LINE L1 3509 4915 -1231 517 294 72 43 chr6 21536798 21537287 -167742267 + L1MEd LINE L1 987 1588 -902 449 262 68 128 chr6 21537632 21537994 -167741560 + L1MEd LINE L1 2767 3149 -2980 4540 71 3 0 chr6 21537994 21538588 -167740966 + L1PA7 LINE L1 5558 6153 -1 449 262 68 128 chr6 21538588 21538699 -167740855 + L1MEd LINE L1 3149 3265 -2864 1857 151 0 0 chr6 21538699 21538978 -167740576 + AluSx SINE Alu 30 308 -4 449 262 68 128 chr6 21538978 21539256 -167740298 + L1MEd LINE L1 3265 3485 -2644 1929 85 0 8 chr6 21539359 21539607 -167739947 - AluSc SINE Alu -30 279 34 4934 23 0 0 chr6 21539840 21540414 -167739140 - L1PA3 LINE L1 0 6155 5582 276 154 0 0 chr6 21540606 21540658 -167738896 + GA-rich Low_complexity Low_complexity 1 52 0 2485 205 44 32 chr6 21540772 21541391 -167738163 + MLT1E2 LTR MaLR 1 626 0 782 197 0 0 chr6 21542365 21542497 -167737057 + FLAM_A SINE Alu 1 132 -1 536 158 20 0 chr6 21543282 21543383 -167736171 - L1PA11 LINE L1 -5 6169 6067 714 200 82 46 chr6 21543816 21543838 -167735716 - MER3 DNA MER1_type -5 204 184 1731 169 91 0 chr6 21543838 21544169 -167735385 + MER46B DNA MER2_type 1 236 0 714 200 82 46 chr6 21544169 21544341 -167735213 - MER3 DNA MER1_type -25 184 3 1722 109 121 8 chr6 21545351 21545640 -167733914 + AluSq SINE Alu 1 318 0 247 221 15 0 chr6 21546152 21546220 -167733334 + (TA)n Simple_repeat Simple_repeat 1 69 0 1975 130 0 4 chr6 21546236 21546512 -167733042 - AluSx SINE Alu -37 275 1 23 0 0 0 chr6 21547066 21547089 -167732465 + AT_rich Low_complexity Low_complexity 1 23 0 222 171 0 0 chr6 21547320 21547355 -167732199 - L2 LINE L2 -16 3256 3222 374 324 82 12 chr6 21547414 21547584 -167731970 - MIR SINE MIR -61 201 20 205 331 69 48 chr6 21547715 21547860 -167731694 - L2 LINE L2 -1 3312 3165 21 36 0 0 chr6 21548666 21548694 -167730860 + AT_rich Low_complexity Low_complexity 1 28 0 207 257 157 14 chr6 21549143 21549213 -167730341 + MIR3 SINE MIR 92 171 -37 26 0 0 0 chr6 21549751 21549777 -167729777 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr6 21549840 21549861 -167729693 + AT_rich Low_complexity Low_complexity 1 21 0 292 350 82 22 chr6 21551012 21551195 -167728359 - MIR SINE MIR -41 221 28 2218 102 0 0 chr6 21551196 21551524 -167728030 - AluSp SINE Alu 0 328 1 355 281 123 19 chr6 21551603 21551863 -167727691 - L1M4 LINE L1 -2171 3975 3689 399 279 23 0 chr6 21552072 21552158 -167727396 - FLAM_A SINE Alu -44 89 2 2470 55 0 0 chr6 21552166 21552456 -167727098 - AluY SINE Alu -21 290 1 240 253 27 0 chr6 21552897 21552972 -167726582 - MLT1L LTR MaLR -342 273 197 1763 152 4 4 chr6 21554720 21554989 -167724565 + AluJo SINE Alu 14 282 -30 1766 233 33 64 chr6 21556338 21556983 -167722571 - MLT1G LTR MaLR 0 590 6 331 376 91 12 chr6 21557093 21557258 -167722296 + L2 LINE L2 3090 3267 -5 247 269 154 0 chr6 21557334 21557412 -167722142 + L2 LINE L2 3212 3301 -12 555 278 94 43 chr6 21557569 21558052 -167721502 - MLT1G1 LTR MaLR -23 532 1 1786 190 84 13 chr6 21558486 21558949 -167720605 + LTR54B LTR ERV1 1 496 -2 2060 179 30 15 chr6 21559361 21559764 -167719790 - MSTB2 LTR MaLR 0 457 49 437 107 13 13 chr6 21559764 21559839 -167719715 - MSTB2 LTR MaLR -368 89 15 1749 173 23 16 chr6 21560180 21560486 -167719068 + AluJb SINE Alu 1 308 -4 918 156 20 0 chr6 21560487 21560731 -167718823 + GA-rich Low_complexity Low_complexity 1 249 0 2174 99 41 0 chr6 21560770 21561064 -167718490 - AluSx SINE Alu -6 306 1 955 89 0 0 chr6 21562018 21562141 -167717413 + AluSg/x SINE Alu 165 287 -25 1982 185 17 0 chr6 21562204 21562561 -167716993 - MLT2D LTR ERVL -48 366 4 188 318 0 30 chr6 21563696 21563762 -167715792 - MIR3 SINE MIR -38 170 107 495 360 75 0 chr6 21565216 21565402 -167714152 - MIR SINE MIR -16 246 47 477 84 0 0 chr6 21567968 21568039 -167711515 + (TA)n Simple_repeat Simple_repeat 1 71 0 11815 207 43 40 chr6 21568094 21570104 -167709450 + L1MA4A LINE L1 10 2014 -4991 718 112 0 0 chr6 21570104 21570211 -167709343 + L1PA11 LINE L1 6067 6173 -1 11815 207 43 40 chr6 21570211 21572545 -167707009 + L1MA4A LINE L1 2014 4342 -2663 2316 113 0 0 chr6 21572545 21572854 -167706700 - AluSg SINE Alu 0 310 2 11815 207 43 40 chr6 21572854 21574475 -167705079 + L1MA4A LINE L1 4342 5958 -1047 25280 42 44 0 chr6 21574475 21578363 -167701191 + L1PA5 LINE L1 2212 6146 -8 11815 207 43 40 chr6 21578363 21579211 -167700343 + L1MA4A LINE L1 5958 6881 -124 2379 61 0 10 chr6 21579211 21579506 -167700048 + AluY SINE Alu 1 292 -19 11815 207 43 40 chr6 21579506 21579609 -167699945 + L1MA4A LINE L1 6881 6982 -23 437 279 40 52 chr6 21580112 21580363 -167699191 + L1MC/D LINE L1 39 286 -5833 616 267 135 106 chr6 21580430 21580598 -167698956 + L1MC/D LINE L1 328 490 -5629 2073 133 7 7 chr6 21580598 21580900 -167698654 + AluSx SINE Alu 1 302 -10 616 267 135 106 chr6 21580900 21581337 -167698217 + L1MC/D LINE L1 490 951 -5168 607 154 7 47 chr6 21581352 21581501 -167698053 + L1MB8 LINE L1 5733 5875 -303 580 307 74 19 chr6 21581512 21582132 -167697422 + L1MC/D LINE L1 946 1628 -4682 649 224 6 6 chr6 21582779 21582953 -167696601 + L1MC/D LINE L1 4422 4595 -1534 1452 223 111 34 chr6 21582963 21583808 -167695746 + L1MC/D LINE L1 4679 5621 -751 230 282 45 27 chr6 21583856 21583966 -167695588 + L1M4 LINE L1 4860 4971 -1175 1912 136 7 14 chr6 21584512 21584807 -167694747 - AluSx SINE Alu -16 296 4 2022 156 12 6 chr6 21584861 21585207 -167694347 + MER7A DNA MER2_type 1 346 0 1506 191 35 85 chr6 21585216 21585840 -167693714 - L1MC5 LINE L1 -101 7860 7268 809 205 73 19 chr6 21585972 21586248 -167693306 - L1MC4 LINE L1 -728 7233 6959 1050 151 0 6 chr6 21586548 21586727 -167692827 + GA-rich Low_complexity Low_complexity 3 180 0 2942 53 35 0 chr6 21587855 21588231 -167691323 - L1PA7 LINE L1 -17 6137 5749 375 281 152 6 chr6 21588827 21588991 -167690563 + MLT1J LTR MaLR 55 242 -269 569 352 86 40 chr6 21589244 21589349 -167690205 + L2 LINE L2 2230 2329 -943 243 0 0 0 chr6 21589349 21589376 -167690178 + (CA)n Simple_repeat Simple_repeat 2 28 0 569 352 86 40 chr6 21589376 21590185 -167689369 + L2 LINE L2 2329 3188 -84 428 279 211 0 chr6 21590240 21590444 -167689110 - MIR SINE MIR 0 262 16 208 315 14 0 chr6 21590666 21590739 -167688815 + MER5B DNA MER1_type 26 99 -79 262 363 180 11 chr6 21590877 21591155 -167688399 - L3 LINE CR1 -1193 384 60 22 56 0 0 chr6 21591248 21591284 -167688270 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr6 21591331 21591361 -167688193 + AT_rich Low_complexity Low_complexity 1 30 0 187 313 94 16 chr6 21591547 21591611 -167687943 - MIR3 SINE MIR -125 83 15 269 275 122 38 chr6 21591737 21591868 -167687686 + MIR SINE MIR 85 226 -36 658 115 39 19 chr6 21592045 21592149 -167687405 - U6 snRNA snRNA -1 106 1 2269 121 3 0 chr6 21592612 21592918 -167686636 + AluSp SINE Alu 1 307 -6 21 0 0 0 chr6 21593115 21593136 -167686418 + AT_rich Low_complexity Low_complexity 1 21 0 437 265 30 24 chr6 21594837 21595003 -167684551 - LTR16B LTR ERVL -4 460 294 566 345 29 5 chr6 21595044 21595250 -167684304 - LTR16B LTR ERVL -239 225 15 21 89 0 0 chr6 21595407 21595463 -167684091 + AT_rich Low_complexity Low_complexity 1 56 0 356 279 192 12 chr6 21596201 21596681 -167682873 + L1ME4a LINE L1 5283 5848 -273 2192 129 132 5 chr6 21596711 21597091 -167682463 - MSTA LTR MaLR 0 428 1 2473 68 0 34 chr6 21597447 21597768 -167681786 + AluY SINE Alu 1 310 -1 228 316 157 5 chr6 21597800 21597985 -167681569 + MIR3 SINE MIR 1 212 -50 262 235 118 29 chr6 21598354 21598456 -167681098 - MIR SINE MIR -1 261 151 2269 102 3 0 chr6 21598499 21598792 -167680762 + AluSq SINE Alu 1 294 -19 1746 251 57 41 chr6 21599393 21599582 -167679972 + HsTC2a DNA Tc2 1 186 -1714 2675 52 0 0 chr6 21599582 21599891 -167679663 - AluY SINE Alu -2 309 1 1746 251 57 41 chr6 21599891 21600407 -167679147 + HsTC2a DNA Tc2 186 717 -27 2322 98 0 10 chr6 21600985 21601290 -167678264 - AluSg SINE Alu -8 302 1 24 53 0 0 chr6 21601607 21601645 -167677909 + AT_rich Low_complexity Low_complexity 1 38 0 236 333 117 17 chr6 21602036 21602156 -167677398 - MIR SINE MIR -130 132 1 1517 296 62 41 chr6 21602791 21603583 -167675971 - L1ME3A LINE L1 -256 5897 5123 2122 79 14 7 chr6 21603583 21603881 -167675673 - AluY SINE Alu 0 300 1 1517 296 62 41 chr6 21603881 21604880 -167674674 - L1ME3A LINE L1 -1030 5123 4050 2442 55 7 0 chr6 21604880 21605171 -167674383 + AluY SINE Alu 5 297 -14 1517 296 62 41 chr6 21605171 21605513 -167674041 - L1ME3A LINE L1 -2103 4050 3717 354 255 115 95 chr6 21605564 21605921 -167673633 - L1ME3A LINE L1 -2554 3575 3212 373 258 115 111 chr6 21606081 21606209 -167673345 - L1ME3A LINE L1 -3180 2949 2823 1893 158 28 0 chr6 21606209 21606500 -167673054 - AluSx SINE Alu -13 299 1 373 258 115 111 chr6 21606500 21607038 -167672516 - L1ME3A LINE L1 -3306 2823 2280 351 236 24 16 chr6 21607049 21607172 -167672382 + (TA)n Simple_repeat Simple_repeat 2 125 0 259 281 43 29 chr6 21607183 21607393 -167672161 - L1ME3A LINE L1 -4915 1395 1183 321 316 72 52 chr6 21607468 21607775 -167671779 - L1ME3A LINE L1 -5104 1015 703 297 196 213 53 chr6 21607788 21607945 -167671609 + MER34 LTR ERV1 1 162 -410 1263 161 120 20 chr6 21607952 21608251 -167671303 + MER39 LTR ERV1 379 707 0 302 250 50 40 chr6 21608267 21608367 -167671187 - L1ME3A LINE L1 -5499 620 520 879 124 73 28 chr6 21608724 21608901 -167670653 + MER53 DNA DNA 3 187 -2 407 339 24 6 chr6 21609141 21609309 -167670245 - MIR3 SINE MIR -28 180 10 25 51 0 0 chr6 21609565 21609604 -167669950 + AT_rich Low_complexity Low_complexity 1 39 0 225 311 143 8 chr6 21610515 21610634 -167668920 + L2 LINE L2 3137 3271 -1 34 42 0 0 chr6 21611390 21611438 -167668116 + AT_rich Low_complexity Low_complexity 1 48 0 2147 104 0 0 chr6 21611488 21611766 -167667788 + AluY SINE Alu 1 278 -33 1323 69 0 0 chr6 21611767 21611942 -167667612 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 416 265 66 7 chr6 21612082 21612233 -167667321 + MIR SINE MIR 103 262 0 1693 183 48 36 chr6 21613008 21613271 -167666283 - L1MB8 LINE L1 -13 6165 5892 402 69 0 0 chr6 21613271 21613329 -167666225 + (TG)n Simple_repeat Simple_repeat 1 58 0 1693 183 48 36 chr6 21613329 21613506 -167666048 - L1MB8 LINE L1 -286 5892 5719 21 36 0 0 chr6 21613873 21613901 -167665653 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr6 21614926 21614947 -167664607 + (TTA)n Simple_repeat Simple_repeat 2 22 0 580 211 18 0 chr6 21614950 21615064 -167664490 - AluJb SINE Alu -196 116 1 448 223 170 0 chr6 21615132 21615244 -167664310 - FLAM_A SINE Alu -2 131 1 207 191 24 0 chr6 21615506 21615548 -167664006 + CT-rich Low_complexity Low_complexity 1 43 0 315 0 0 0 chr6 21615551 21615586 -167663968 + (CA)n Simple_repeat Simple_repeat 2 36 0 299 239 124 17 chr6 21615766 21615906 -167663648 - L1ME3A LINE L1 -264 5898 5747 1687 141 78 14 chr6 21616265 21616549 -167663005 + AluJb SINE Alu 6 307 -5 186 43 0 0 chr6 21616640 21616663 -167662891 + (TG)n Simple_repeat Simple_repeat 2 24 0 2409 100 0 0 chr6 21617825 21618135 -167661419 - AluSx SINE Alu -2 310 1 896 149 0 8 chr6 21620388 21620544 -167659010 - AluJb SINE Alu 0 309 155 234 0 0 0 chr6 21620664 21620690 -167658864 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 252 0 0 0 chr6 21620689 21620717 -167658837 + (CA)n Simple_repeat Simple_repeat 1 28 0 1495 197 13 30 chr6 21621276 21621581 -167657973 - AluJo SINE Alu -12 300 1 2388 107 0 0 chr6 21622304 21622612 -167656942 - AluSx SINE Alu -4 308 1 249 33 0 0 chr6 21622928 21622958 -167656596 + (TC)n Simple_repeat Simple_repeat 1 30 0 221 57 29 0 chr6 21623473 21623508 -167656046 + (TG)n Simple_repeat Simple_repeat 1 36 0 2273 103 0 17 chr6 21623583 21623884 -167655670 - AluSq SINE Alu -17 296 1 2357 117 10 0 chr6 21626197 21626506 -167653048 + AluSx SINE Alu 1 312 0 894 144 63 0 chr6 21627047 21627221 -167652333 + L1MA7 LINE L1 6104 6288 -3 1342 183 48 41 chr6 21627754 21628044 -167651510 - AluJo SINE Alu -20 292 1 214 282 209 9 chr6 21628268 21628378 -167651176 - MIR SINE MIR -44 218 87 258 312 118 0 chr6 21630188 21630281 -167649273 + MIR SINE MIR 49 152 -110 195 139 0 0 chr6 21631109 21631145 -167648409 + (T)n Simple_repeat Simple_repeat 1 36 0 2404 280 24 25 chr6 21631178 21631853 -167647701 + MER115 DNA AcHobo 3 676 -17 4842 112 0 0 chr6 21632076 21632753 -167646801 + L1PA13 LINE L1 5448 6124 -39 186 350 88 10 chr6 21632766 21632960 -167646594 + L2 LINE L2 2624 2832 -482 191 326 14 64 chr6 21634697 21634838 -167644716 + L2 LINE L2 2753 2886 -428 306 0 0 0 chr6 21634838 21634872 -167644682 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 527 252 91 24 chr6 21634875 21635085 -167644469 + MLT1G1 LTR MaLR 103 326 -269 701 271 21 5 chr6 21635311 21635503 -167644051 + MIR SINE MIR 53 247 -15 2335 71 0 0 chr6 21636011 21636326 -167643228 - AluY SINE Alu 0 315 1 22 0 0 0 chr6 21637308 21637330 -167642224 + AT_rich Low_complexity Low_complexity 1 22 0 404 291 122 5 chr6 21637543 21637739 -167641815 - MIR SINE MIR -15 247 29 1479 249 25 6 chr6 21637769 21638127 -167641427 - MLT1A1 LTR MaLR 0 365 1 196 346 13 13 chr6 21638447 21638525 -167641029 - MER5B DNA MER1_type -45 133 56 321 183 28 4 chr6 21638547 21638657 -167640897 - MER5A DNA MER1_type 0 189 35 238 262 47 84 chr6 21638656 21638763 -167640791 - MER5B DNA MER1_type -74 104 2 * 294 277 45 23 chr6 21638945 21639083 -167640471 + MIR3 SINE MIR 45 186 -22 349 247 160 40 chr6 21639957 21640107 -167639447 + MER5A DNA MER1_type 13 180 -9 1756 154 3 42 chr6 21640586 21640898 -167638656 - MLT1B LTR MaLR 0 390 91 416 143 0 0 chr6 21640900 21640963 -167638591 - MLT1C LTR MaLR -115 352 290 * 463 188 27 89 chr6 21640954 21641066 -167638488 - MLT1C LTR MaLR -362 105 1 381 22 0 0 chr6 21641714 21641760 -167637794 + (CA)n Simple_repeat Simple_repeat 2 47 0 4278 135 59 48 chr6 21642557 21642810 -167636744 - pTR5 LTR ERV1 -25 2212 1963 187 53 26 26 chr6 21642810 21642848 -167636706 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4278 135 59 48 chr6 21642848 21643839 -167635715 - pTR5 LTR ERV1 -274 1963 7 1982 109 18 0 chr6 21643840 21644116 -167635438 + AluSp SINE Alu 32 312 -1 906 194 184 43 chr6 21644189 21644626 -167634928 - MLT1E1 LTR MaLR -74 580 1 3633 170 32 17 chr6 21645672 21646395 -167633159 + L1MB4 LINE L1 5446 6179 -1 181 233 47 35 chr6 21646738 21646824 -167632730 + L3b LINE CR1 1146 1232 -351 263 238 70 98 chr6 21646843 21646986 -167632568 + MIR3 SINE MIR 20 158 -50 243 311 17 25 chr6 21646990 21647109 -167632445 - L2 LINE L2 0 3272 3155 226 200 30 80 chr6 21647433 21647533 -167632021 - L2 LINE L2 -656 2658 2564 234 0 0 0 chr6 21648229 21648255 -167631299 + (GA)n Simple_repeat Simple_repeat 2 27 0 207 69 0 0 chr6 21648460 21648489 -167631065 + (TG)n Simple_repeat Simple_repeat 1 29 0 368 235 101 13 chr6 21648556 21648705 -167630849 - L1ME3A LINE L1 -96 6074 5913 2661 68 0 0 chr6 21648945 21649255 -167630299 + AluSg SINE Alu 1 310 0 469 183 70 9 chr6 21649462 21649577 -167629977 - MIR SINE MIR -62 200 79 26 30 0 0 chr6 21649698 21649731 -167629823 + AT_rich Low_complexity Low_complexity 1 33 0 430 297 67 67 chr6 21649732 21650237 -167629317 - L2 LINE L2 0 3313 2809 2328 91 33 0 chr6 21651668 21652006 -167627548 - LTR12 LTR ERV1 0 714 383 3666 143 87 39 chr6 21652007 21652676 -167626878 - LTR12 LTR ERV1 -11 703 3 1737 180 7 10 chr6 21652676 21652965 -167626589 + AluJo SINE Alu 10 297 -15 1536 184 223 39 chr6 21653206 21653663 -167625891 - MLT1F LTR MaLR 0 542 2 315 71 0 0 chr6 21653668 21653710 -167625844 + (TG)n Simple_repeat Simple_repeat 2 43 0 180 375 31 10 chr6 21653926 21654022 -167625532 + L2 LINE L2 3015 3112 -160 240 35 0 0 chr6 21654277 21654306 -167625248 + (CAT)n Simple_repeat Simple_repeat 1 29 0 552 308 110 9 chr6 21655004 21655231 -167624323 - MIR SINE MIR -1 261 12 326 301 36 0 chr6 21656068 21656151 -167623403 - MIR SINE MIR -115 147 62 206 197 40 66 chr6 21657725 21657801 -167621753 - L2 LINE L2 -78 3235 3162 237 310 106 42 chr6 21657979 21658263 -167621291 - L2 LINE L2 -463 2851 2550 381 304 87 0 chr6 21658531 21658646 -167620908 + L2 LINE L2 3182 3306 -7 408 302 119 38 chr6 21658771 21659006 -167620548 - MIR SINE MIR 0 262 9 246 237 17 0 chr6 21659546 21659605 -167619949 + L2 LINE L2 3253 3312 -1 180 0 0 0 chr6 21660099 21660119 -167619435 + (T)n Simple_repeat Simple_repeat 1 20 0 293 324 114 11 chr6 21661113 21661289 -167618265 - L3b LINE CR1 -261 1322 1129 1741 171 7 32 chr6 21663218 21663528 -167616026 + AluJo SINE Alu 5 306 -6 316 354 22 58 chr6 21663870 21664096 -167615458 - MIR SINE MIR -19 243 26 2135 120 0 10 chr6 21664176 21664475 -167615079 + AluSx SINE Alu 1 296 -16 11809 42 8 0 chr6 21664481 21666707 -167612847 - L1PA6 LINE L1 0 6154 3917 2258 100 10 7 chr6 21666980 21667279 -167612275 - AluSg SINE Alu -10 300 1 1031 147 13 0 chr6 21667320 21667476 -167612078 + AluSg/x SINE Alu 135 292 -20 4499 194 27 20 chr6 21667615 21668208 -167611346 + MER45B DNA AcHobo 37 641 -940 1970 158 6 3 chr6 21668208 21668519 -167611035 + AluSx SINE Alu 1 312 0 4499 194 27 20 chr6 21668519 21668922 -167610632 + MER45B DNA AcHobo 641 1040 0 735 268 128 38 chr6 21669362 21669839 -167609715 + HAL1 LINE L1 1984 2503 -4 278 294 220 67 chr6 21669862 21670280 -167609274 - LTR67 LTR ERVL -74 483 2 246 62 0 0 chr6 21670404 21670436 -167609118 + (TC)n Simple_repeat Simple_repeat 1 32 0 291 28 0 0 chr6 21670611 21670647 -167608907 + (CAAG)n Simple_repeat Simple_repeat 3 38 0 7161 40 10 1 chr6 21671509 21672485 -167607069 + L1PA7 LINE L1 5165 6148 -6 259 292 15 0 chr6 21673138 21673203 -167606351 - L3 LINE CR1 -248 1329 1264 352 119 0 0 chr6 21673210 21673269 -167606285 - Alu SINE Alu 0 302 244 185 243 121 79 chr6 21673279 21673331 -167606223 - L3 LINE CR1 -321 1256 1208 2295 97 0 7 chr6 21673331 21673639 -167605915 + AluSq SINE Alu 1 306 -7 185 243 121 79 chr6 21673639 21673726 -167605828 - L3 LINE CR1 -369 1208 1111 * 208 398 70 8 chr6 21673709 21673837 -167605717 - L2 LINE L2 0 3272 3137 302 332 153 0 chr6 21674091 21674281 -167605273 - L1M4 LINE L1 -2972 3174 2956 1100 151 23 41 chr6 21675210 21675428 -167604126 + MER20 DNA MER1_type 6 219 0 371 247 0 0 chr6 21675581 21675670 -167603884 - Charlie8 DNA MER1_type -2256 161 73 198 182 0 76 chr6 21676053 21676119 -167603435 + MIR SINE MIR 154 214 -48 359 292 118 12 chr6 21677214 21677375 -167602179 + MER5A DNA MER1_type 9 186 -3 525 328 51 2 chr6 21677398 21677812 -167601742 - MLT1L LTR MaLR -79 536 35 2323 86 0 3 chr6 21678025 21678327 -167601227 - AluSq SINE Alu -12 301 1 206 355 40 0 chr6 21678369 21678445 -167601109 - MIR3 SINE MIR -16 192 114 4224 148 24 14 chr6 21679007 21679725 -167599829 - MER44D DNA MER2_type 0 605 9 262 306 95 48 chr6 21679769 21679916 -167599638 + L3 LINE CR1 1003 1156 -421 322 268 176 33 chr6 21679938 21680091 -167599463 - MIR SINE MIR -53 209 35 423 257 74 40 chr6 21680118 21680266 -167599288 - MIR SINE MIR -18 244 92 211 152 0 0 chr6 21680330 21680363 -167599191 + L3 LINE CR1 1294 1326 -251 21 0 0 0 chr6 21680856 21680877 -167598677 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 21681413 21681434 -167598120 + AT_rich Low_complexity Low_complexity 1 21 0 2070 98 7 20 chr6 21683312 21683617 -167595937 - AluSq SINE Alu -12 301 1 195 317 30 40 chr6 21684059 21684160 -167595394 + L2 LINE L2 2840 2939 -375 517 232 132 96 chr6 21684606 21684878 -167594676 - L2 LINE L2 -1 3312 3031 219 88 0 0 chr6 21684879 21684913 -167594641 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 4111 113 14 7 chr6 21684935 21685555 -167593999 - L1PB1 LINE L1 -6 6145 5521 259 292 29 74 chr6 21685650 21685893 -167593661 - L2 LINE L2 -1262 2052 1821 835 176 0 0 chr6 21685933 21686075 -167593479 + FLAM_C SINE Alu 1 142 -1 2539 61 0 3 chr6 21686091 21686401 -167593153 + AluY SINE Alu 1 309 -2 1069 178 18 49 chr6 21686495 21686720 -167592834 - MER20 DNA MER1_type -1 218 1 225 371 64 21 chr6 21687628 21687768 -167591786 - MIR SINE MIR -6 256 111 375 60 0 0 chr6 21689157 21689207 -167590347 + (TG)n Simple_repeat Simple_repeat 1 50 0 358 215 21 55 chr6 21692209 21692335 -167587219 - MIR SINE MIR -70 138 23 2635 42 0 6 chr6 21693044 21693356 -167586198 - AluY SINE Alu -1 310 1 230 225 38 12 chr6 21693612 21693692 -167585862 - L1ME4a LINE L1 -49 6072 5991 244 210 25 37 chr6 21693754 21693835 -167585719 + MER116 DNA Mariner 1 80 0 1715 131 64 14 chr6 21694033 21694342 -167585212 + AluSq SINE Alu 7 313 0 234 0 0 0 chr6 21695843 21695869 -167583685 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 1541 147 59 82 chr6 21697473 21697662 -167581892 - AluJb SINE Alu -13 299 118 297 0 0 0 chr6 21697662 21697695 -167581859 + (TA)n Simple_repeat Simple_repeat 1 33 0 1541 147 59 82 chr6 21697695 21697811 -167581743 - AluJb SINE Alu -194 118 1 3633 122 2 28 chr6 21698112 21698652 -167580902 - MER1A DNA MER1_type 0 527 2 188 33 0 33 chr6 21698704 21698734 -167580820 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 267 31 0 0 chr6 21698956 21698988 -167580566 + (GA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr6 21699654 21699682 -167579872 + AT_rich Low_complexity Low_complexity 1 28 0 2222 107 3 16 chr6 21700778 21701088 -167578466 - AluSg SINE Alu -4 306 1 21 0 0 0 chr6 21701262 21701283 -167578271 + AT_rich Low_complexity Low_complexity 1 21 0 2417 86 3 0 chr6 21702019 21702322 -167577232 - AluSp SINE Alu -9 304 1 248 248 28 131 chr6 21702442 21702587 -167576967 + MIR SINE MIR 61 190 -72 468 275 84 24 chr6 21703265 21703432 -167576122 + MIR SINE MIR 30 206 -56 207 216 0 0 chr6 21703504 21703541 -167576013 + L2 LINE L2 3219 3255 -17 1605 55 0 0 chr6 21703563 21703765 -167575789 - L1PA5 LINE L1 -2 6152 5951 1794 146 57 0 chr6 21703765 21704045 -167575509 + AluSx SINE Alu 6 301 -11 1751 129 18 11 chr6 21705408 21705736 -167573818 - AluSx SINE Alu 0 330 1 2418 75 0 3 chr6 21706349 21706654 -167572900 - AluSq SINE Alu -9 304 1 593 304 43 32 chr6 21706858 21707111 -167572443 - MIR SINE MIR -1 261 6 2435 76 0 0 chr6 21707308 21707610 -167571944 - AluY SINE Alu -9 302 1 5906 20 6 0 chr6 21708264 21708950 -167570604 - L1PA2 LINE L1 -2 6153 5464 35 24 0 0 chr6 21709498 21709540 -167570014 + AT_rich Low_complexity Low_complexity 1 42 0 393 237 26 13 chr6 21709553 21709705 -167569849 + (TA)n Simple_repeat Simple_repeat 1 154 0 264 273 80 87 chr6 21710971 21711121 -167568433 - L2 LINE L2 -42 3271 3123 22 70 0 0 chr6 21711518 21711561 -167567993 + AT_rich Low_complexity Low_complexity 1 43 0 360 356 164 8 chr6 21711596 21711998 -167567556 - L2 LINE L2 -816 2498 2034 1024 83 0 8 chr6 21712007 21712139 -167567415 + AluSc SINE Alu 1 131 -178 2424 84 7 0 chr6 21712142 21712451 -167567103 + AluSx SINE Alu 1 311 -1 5364 130 32 29 chr6 21713503 21713558 -167565996 + L1MA5 LINE L1 5319 5372 -928 2134 125 30 0 chr6 21713558 21713861 -167565693 + AluSx SINE Alu 1 312 0 5364 130 32 29 chr6 21713861 21714782 -167564772 + L1MA5 LINE L1 5372 6298 -2 1891 112 0 0 chr6 21714796 21715037 -167564517 + AluSx SINE Alu 10 250 -62 284 319 141 15 chr6 21715188 21715323 -167564231 + MIR3 SINE MIR 52 203 -5 882 266 103 88 chr6 21715358 21715784 -167563770 + L2 LINE L2 1636 2075 -1239 791 169 123 60 chr6 21715784 21716086 -167563468 - MER33 DNA MER1_type 0 324 4 882 266 103 88 chr6 21716086 21716241 -167563313 + L2 LINE L2 2075 2226 -1088 713 258 39 82 chr6 21716243 21716770 -167562784 - L2 LINE L2 -2 3311 2538 1041 165 5 24 chr6 21716825 21717031 -167562523 - MER3 DNA MER1_type -6 203 2 679 297 39 66 chr6 21717124 21717454 -167562100 + L2 LINE L2 2316 2636 -678 369 208 195 88 chr6 21717454 21717613 -167561941 - MER5B DNA MER1_type -1 177 2 679 297 39 66 chr6 21717613 21717663 -167561891 + L2 LINE L2 2636 2686 -628 445 264 147 35 chr6 21717804 21718001 -167561553 - MIR SINE MIR -13 249 31 208 0 62 0 chr6 21718943 21718975 -167560579 + (CA)n Simple_repeat Simple_repeat 2 35 0 192 152 0 0 chr6 21720095 21720128 -167559426 + CT-rich Low_complexity Low_complexity 1 33 0 3739 124 24 24 chr6 21720209 21720844 -167558710 - MER41B LTR ERV1 0 635 1 252 217 22 0 chr6 21721215 21721261 -167558293 - MER5A DNA MER1_type 0 189 143 2512 77 0 6 chr6 21721782 21722095 -167557459 - AluY SINE Alu 0 311 1 2346 84 0 3 chr6 21722458 21722794 -167556760 + AluSp SINE Alu 6 340 0 422 206 2 11 chr6 21724127 21724258 -167555296 - L1ME LINE L1 -387 5758 5629 554 235 51 11 chr6 21724397 21724660 -167554894 - L1ME LINE L1 -537 5567 5275 649 296 90 49 chr6 21724685 21725745 -167553809 - L1ME LINE L1 -900 5229 4127 246 222 0 19 chr6 21725746 21725800 -167553754 + CT-rich Low_complexity Low_complexity 2 54 0 455 264 95 90 chr6 21725825 21725943 -167553611 - L1ME LINE L1 -1964 4165 4049 2353 73 7 0 chr6 21725943 21726243 -167553311 + AluSq SINE Alu 1 302 -11 455 264 95 90 chr6 21726243 21726346 -167553208 - L1ME LINE L1 -2080 4049 3948 1595 97 14 5 chr6 21726346 21726563 -167552991 - AluSg/x SINE Alu -19 291 73 455 264 95 90 chr6 21726563 21726708 -167552846 - L1ME LINE L1 -2181 3948 3796 1141 103 31 16 chr6 21726751 21726945 -167552609 - L1MB2 LINE L1 -16 6155 5959 3867 133 23 19 chr6 21726950 21727640 -167551914 + L1MA8 LINE L1 5587 6279 -12 335 236 113 55 chr6 21728119 21728429 -167551125 - L1ME LINE L1 -2665 3464 3137 22 80 0 0 chr6 21728635 21728685 -167550869 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr6 21728726 21728762 -167550792 + AT_rich Low_complexity Low_complexity 1 36 0 225 154 0 0 chr6 21728795 21728834 -167550720 + T-rich Low_complexity Low_complexity 1 39 0 2188 141 0 0 chr6 21728836 21729148 -167550406 - AluSx SINE Alu 0 312 1 257 209 52 26 chr6 21729294 21729409 -167550145 - L1ME LINE L1 -3690 2439 2322 261 240 25 16 chr6 21729462 21729583 -167549971 + (TA)n Simple_repeat Simple_repeat 2 123 0 575 162 0 38 chr6 21729861 21729966 -167549588 - AluJb SINE Alu -78 234 134 738 291 94 46 chr6 21730164 21731208 -167548346 - L1MEd LINE L1 -4746 1564 420 309 109 0 0 chr6 21731459 21731505 -167548049 + (CA)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr6 21731513 21731538 -167548016 + AT_rich Low_complexity Low_complexity 1 25 0 2489 74 0 0 chr6 21733571 21733882 -167545672 - AluY SINE Alu 0 311 1 1043 115 5 72 chr6 21733929 21734137 -167545417 + LTR57 LTR ERVL 2 195 -216 214 149 0 43 chr6 21734224 21734271 -167545283 + (CAT)n Simple_repeat Simple_repeat 3 47 0 4111 113 14 7 chr6 21734329 21734949 -167544605 + L1PB1 LINE L1 5521 6145 -6 219 88 0 0 chr6 21734971 21735005 -167544549 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 517 232 132 96 chr6 21735006 21735278 -167544276 + L2 LINE L2 3031 3312 -1 195 317 30 40 chr6 21735724 21735825 -167543729 - L2 LINE L2 -375 2938 2839 2070 98 7 20 chr6 21736267 21736572 -167542982 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr6 21738450 21738471 -167541083 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 21739007 21739028 -167540526 + AT_rich Low_complexity Low_complexity 1 21 0 211 152 0 0 chr6 21739521 21739554 -167540000 - L3 LINE CR1 -251 1326 1294 423 257 74 40 chr6 21739618 21739766 -167539788 + MIR SINE MIR 92 244 -18 328 270 178 26 chr6 21739793 21739945 -167539609 + MIR SINE MIR 35 209 -53 262 306 95 48 chr6 21739967 21740114 -167539440 - L3 LINE CR1 -421 1156 1003 4224 148 24 14 chr6 21740158 21740876 -167538678 + MER44D DNA MER2_type 9 605 0 206 355 40 0 chr6 21741438 21741514 -167538040 + MIR3 SINE MIR 114 192 -16 2323 86 0 3 chr6 21741556 21741858 -167537696 + AluSq SINE Alu 1 301 -12 525 328 51 2 chr6 21742071 21742485 -167537069 + MLT1L LTR MaLR 35 536 -79 359 292 118 12 chr6 21742508 21742669 -167536885 - MER5A DNA MER1_type -3 186 9 198 182 0 76 chr6 21743764 21743830 -167535724 - MIR SINE MIR -48 214 154 371 247 0 0 chr6 21744213 21744302 -167535252 + Charlie8 DNA MER1_type 73 161 -2256 1100 151 23 41 chr6 21744455 21744673 -167534881 - MER20 DNA MER1_type 0 219 6 302 332 153 0 chr6 21745602 21745792 -167533762 + L1M4 LINE L1 2956 3174 -2972 208 398 70 8 chr6 21746046 21746174 -167533380 + L2 LINE L2 3137 3272 0 185 243 121 79 chr6 21746157 21746244 -167533310 + L3 LINE CR1 1111 1208 -369 * 2295 97 0 7 chr6 21746244 21746552 -167533002 - AluSq SINE Alu -7 306 1 185 243 121 79 chr6 21746552 21746604 -167532950 + L3 LINE CR1 1208 1256 -321 352 119 0 0 chr6 21746614 21746673 -167532881 + Alu SINE Alu 244 302 0 259 292 15 0 chr6 21746680 21746745 -167532809 + L3 LINE CR1 1264 1329 -248 7161 40 30 4 chr6 21747398 21748374 -167531180 - L1PA7 LINE L1 -6 6148 5165 291 28 0 0 chr6 21749236 21749272 -167530282 + (CTTG)n Simple_repeat Simple_repeat 3 38 0 246 62 0 0 chr6 21749447 21749479 -167530075 + (GA)n Simple_repeat Simple_repeat 1 32 0 278 294 220 67 chr6 21749603 21750021 -167529533 + LTR67 LTR ERVL 2 483 -74 735 268 128 38 chr6 21750044 21750521 -167529033 - HAL1 LINE L1 -4 2503 1984 4499 194 27 20 chr6 21750961 21751364 -167528190 - MER45B DNA AcHobo -541 1040 641 1970 158 6 3 chr6 21751364 21751675 -167527879 - AluSx SINE Alu 0 312 1 4499 194 27 20 chr6 21751675 21752268 -167527286 - MER45B DNA AcHobo -940 641 37 1031 147 13 0 chr6 21752407 21752563 -167526991 - AluSg/x SINE Alu -20 292 135 2258 100 10 7 chr6 21752604 21752903 -167526651 + AluSg SINE Alu 1 300 -10 11809 42 5 0 chr6 21753176 21755402 -167524152 + L1PA6 LINE L1 3917 6154 0 2135 120 0 10 chr6 21755408 21755707 -167523847 - AluSx SINE Alu -16 296 1 316 354 22 58 chr6 21755787 21756013 -167523541 + MIR SINE MIR 26 243 -19 1741 171 7 32 chr6 21756355 21756665 -167522889 - AluJo SINE Alu -6 306 5 293 324 114 11 chr6 21758594 21758770 -167520784 + L3b LINE CR1 1129 1322 -261 180 0 0 0 chr6 21759764 21759784 -167519770 + (A)n Simple_repeat Simple_repeat 1 20 0 246 237 17 0 chr6 21760278 21760337 -167519217 - L2 LINE L2 -1 3312 3253 408 302 119 38 chr6 21760877 21761112 -167518442 + MIR SINE MIR 9 262 0 381 304 87 0 chr6 21761237 21761352 -167518202 - L2 LINE L2 -7 3306 3182 237 310 106 42 chr6 21761620 21761904 -167517650 + L2 LINE L2 2550 2851 -463 206 197 40 66 chr6 21762082 21762158 -167517396 + L2 LINE L2 3162 3235 -78 326 301 36 0 chr6 21763732 21763815 -167515739 + MIR SINE MIR 62 147 -115 2186 113 3 3 chr6 21765628 21765937 -167513617 + AluSx SINE Alu 1 309 -3 2036 133 0 7 chr6 21766391 21766727 -167512827 - AluSx SINE Alu 0 334 1 459 270 50 55 chr6 21766981 21767181 -167512373 - MIR SINE MIR -34 228 30 204 271 153 61 chr6 21767717 21767979 -167511575 + L2 LINE L2 2967 3252 -61 300 304 49 10 chr6 21768067 21768169 -167511385 - MIR SINE MIR -88 174 69 212 184 0 0 chr6 21769353 21769391 -167510163 - MIR SINE MIR -11 251 214 22 35 0 0 chr6 21769504 21769533 -167510021 + AT_rich Low_complexity Low_complexity 1 29 0 947 164 16 22 chr6 21769626 21769809 -167509745 + AluSg/x SINE Alu 130 311 -1 988 189 5 11 chr6 21771511 21771702 -167507852 - AluJo SINE Alu -1 311 122 8684 110 15 82 chr6 21771703 21773015 -167506539 + Tigger1 DNA MER2_type 56 1238 -1180 2320 67 0 11 chr6 21773015 21773300 -167506254 - AluY SINE Alu -1 310 29 8684 110 15 82 chr6 21773300 21773625 -167505929 + Tigger1 DNA MER2_type 1238 1583 -835 763 126 15 44 chr6 21773630 21773765 -167505789 + AluJ SINE Alu 1 131 -171 41241 30 21 1 chr6 21773771 21779797 -167499757 + L1HS LINE L1 7 6155 0 228 35 0 0 chr6 21779800 21779829 -167499725 + (A)n Simple_repeat Simple_repeat 1 29 0 1160 163 0 20 chr6 21779829 21780025 -167499529 + AluJ SINE Alu 120 311 -1 4073 127 25 22 chr6 21780028 21780191 -167499363 + Tigger1 DNA MER2_type 1585 1746 -672 2015 77 59 21 chr6 21780191 21780478 -167499076 + AluY SINE Alu 1 298 -13 4073 127 25 22 chr6 21780478 21781036 -167498518 + Tigger1 DNA MER2_type 1746 2308 -110 627 180 40 47 chr6 21781105 21781255 -167498299 + Tigger1 DNA MER2_type 2269 2417 -1 2136 114 7 3 chr6 21781300 21781622 -167497932 + AluSq SINE Alu 1 323 0 2139 132 3 0 chr6 21782583 21782878 -167496676 + AluSx SINE Alu 1 296 -16 2695 19 0 0 chr6 21783049 21783372 -167496182 - L1PA3 LINE L1 -167 5988 5666 1449 12 0 0 chr6 21783379 21783544 -167496010 + L1PA3 LINE L1 5991 6155 0 1494 219 50 71 chr6 21784026 21784256 -167495298 + L1ME1 LINE L1 4615 4848 -1298 1635 150 93 31 chr6 21784256 21784609 -167494945 - THE1C LTR MaLR 0 375 1 1494 219 50 71 chr6 21784609 21784780 -167494774 + L1ME1 LINE L1 4848 5021 -1125 2161 118 0 0 chr6 21784780 21785076 -167494478 + AluSx SINE Alu 1 296 -16 1494 219 50 71 chr6 21785076 21785338 -167494216 + L1ME1 LINE L1 5021 5265 -881 886 150 0 0 chr6 21785345 21785472 -167494082 - FRAM SINE Alu -3 173 47 1706 208 83 55 chr6 21785474 21786042 -167493512 + L1ME1 LINE L1 5530 6081 -85 1588 154 41 31 chr6 21786042 21786335 -167493219 + AluJo SINE Alu 1 296 -16 2401 94 0 7 chr6 21786339 21786647 -167492907 - AluSx SINE Alu -6 306 1 1706 208 83 55 chr6 21786647 21786688 -167492866 + L1ME1 LINE L1 6083 6161 -5 21 36 0 0 chr6 21786862 21786890 -167492664 + AT_rich Low_complexity Low_complexity 1 28 0 792 20 0 10 chr6 21786906 21787006 -167492548 - L1PB1 LINE L1 0 6151 6053 2443 69 0 13 chr6 21787369 21787672 -167491882 - AluY SINE Alu -12 299 1 2334 95 0 3 chr6 21787873 21788177 -167491377 - AluSx SINE Alu -9 303 1 2593 175 32 20 chr6 21790709 21791212 -167488342 - MLT2B2 LTR ERVL -6 509 1 261 250 228 0 chr6 21791549 21791641 -167487913 + MIR SINE MIR 88 200 -62 625 244 45 51 chr6 21792998 21793191 -167486363 - MLT2C1 LTR ERVL -34 380 201 2338 107 0 0 chr6 21793191 21793501 -167486053 + AluSg SINE Alu 1 310 0 625 244 45 51 chr6 21793501 21793689 -167485865 - MLT2C1 LTR ERVL -213 201 13 1652 265 38 34 chr6 21793721 21794495 -167485059 + L1M4 LINE L1 4410 5186 -960 368 127 0 0 chr6 21794496 21794559 -167484995 + L1MA9 LINE L1 6212 6274 -38 524 231 75 42 chr6 21794610 21794822 -167484732 + L1M4 LINE L1 4812 5030 -1116 282 221 250 0 chr6 21794822 21794926 -167484628 + L1ME3A LINE L1 6034 6163 -7 1563 164 101 9 chr6 21794939 21795257 -167484297 + MER7A DNA MER2_type 1 345 -1 297 258 0 0 chr6 21795258 21795351 -167484203 + (TATG)n Simple_repeat Simple_repeat 2 94 0 299 317 10 0 chr6 21795455 21795556 -167483998 + (TA)n Simple_repeat Simple_repeat 2 103 0 255 31 0 0 chr6 21796299 21796331 -167483223 + (TA)n Simple_repeat Simple_repeat 1 32 0 2474 71 3 0 chr6 21796332 21796628 -167482926 - AluSp SINE Alu -16 297 1 246 349 148 0 chr6 21797050 21797219 -167482335 + MER117 DNA MER1_type 3 196 -1 204 222 0 0 chr6 21797256 21797301 -167482253 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 21 36 0 0 chr6 21797945 21797973 -167481581 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 21798009 21798031 -167481523 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr6 21798089 21798113 -167481441 + (TG)n Simple_repeat Simple_repeat 2 25 0 310 343 9 0 chr6 21799307 21799415 -167480139 + MIR SINE MIR 125 233 -29 298 260 41 112 chr6 21799478 21799647 -167479907 - MIR SINE MIR -25 237 81 2009 119 57 3 chr6 21801209 21801545 -167478009 - MER46B DNA MER2_type 0 236 8 2141 116 20 3 chr6 21801932 21802233 -167477321 - AluSq SINE Alu -7 306 1 208 91 45 23 chr6 21802749 21802793 -167476761 + GA-rich Low_complexity Low_complexity 3 47 0 460 292 142 34 chr6 21802858 21803211 -167476343 + MLT1I LTR MaLR 19 409 0 330 329 234 13 chr6 21803547 21803945 -167475609 - L2 LINE L2 -784 2530 2045 182 294 71 47 chr6 21804316 21804401 -167475153 - MIR SINE MIR -3 259 173 2757 249 70 9 chr6 21804786 21805585 -167473969 + L1MD2 LINE L1 108 955 -5585 * 5773 203 63 52 chr6 21805573 21806357 -167473197 + L1MD2 LINE L1 1179 1953 -4587 1316 192 80 4 chr6 21806357 21806633 -167472921 + AluJo SINE Alu 5 301 -11 5773 203 63 52 chr6 21806633 21809052 -167470502 + L1MD2 LINE L1 1953 4436 -2104 2083 123 30 0 chr6 21809052 21809353 -167470201 + AluSx SINE Alu 1 310 -2 5773 203 63 52 chr6 21809353 21809652 -167469902 + L1MD2 LINE L1 4436 4730 -1810 1019 168 56 0 chr6 21809652 21809831 -167469723 + L1PA15 LINE L1 5976 6164 -1 3704 212 99 49 chr6 21809831 21809883 -167469671 + L1MD2 LINE L1 5526 5574 -1179 2383 79 3 10 chr6 21809883 21810187 -167469367 - AluSp SINE Alu -2 311 10 3704 212 99 49 chr6 21810187 21810254 -167469300 + L1MD2 LINE L1 5574 5636 -1117 2053 166 0 20 chr6 21810254 21810598 -167468956 + MER1B DNA MER1_type 1 337 0 3704 212 99 49 chr6 21810598 21811660 -167467894 + L1MD2 LINE L1 5636 6753 0 468 298 0 24 chr6 21811661 21811785 -167467769 + MER5B DNA MER1_type 58 178 0 202 213 85 0 chr6 21814861 21814908 -167464646 - L2 LINE L2 -3 3269 3219 414 101 241 0 chr6 21814950 21815029 -167464525 + AluSg SINE Alu 5 102 -208 4215 124 70 64 chr6 21815029 21816410 -167463144 - pTR5 LTR ERV1 -1 2437 743 1278 112 20 30 chr6 21816410 21816607 -167462947 + AluSg SINE Alu 99 293 -19 224 163 0 20 chr6 21816610 21816659 -167462895 + GA-rich Low_complexity Low_complexity 1 48 0 360 274 14 0 chr6 21816749 21816822 -167462732 - MER5A DNA MER1_type -106 83 10 632 283 30 0 chr6 21817537 21817703 -167461851 + MER5B DNA MER1_type 7 177 -1 289 311 47 0 chr6 21818237 21818343 -167461211 - L2 LINE L2 0 3313 3203 22 56 0 0 chr6 21818444 21818480 -167461074 + AT_rich Low_complexity Low_complexity 1 36 0 746 249 127 47 chr6 21818551 21818960 -167460594 - L1MC4a LINE L1 -1762 6046 5605 * 781 318 44 21 chr6 21818958 21819345 -167460209 - L1ME LINE L1 -444 5677 5282 229 263 35 0 chr6 21819366 21819423 -167460131 - MIR SINE MIR 0 262 204 2143 97 0 10 chr6 21819763 21820072 -167459482 - AluSg1 SINE Alu 0 306 1 387 264 50 50 chr6 21820129 21820330 -167459224 - L1ME4a LINE L1 -82 6039 5839 290 329 117 41 chr6 21821929 21822183 -167457371 + L2 LINE L2 2780 3047 -225 1796 166 32 9 chr6 21822896 21823240 -167456314 + L1MC3 LINE L1 7434 7785 0 2205 111 0 10 chr6 21823649 21823956 -167455598 + AluSg SINE Alu 2 305 -5 2374 78 3 0 chr6 21824987 21825280 -167454274 - AluY SINE Alu -17 294 1 345 303 8 30 chr6 21825327 21825459 -167454095 - MIR SINE MIR -109 153 25 288 304 36 7 chr6 21825899 21826037 -167453517 - L1M4b LINE L1 -5330 1529 1388 2309 99 3 3 chr6 21826042 21826345 -167453209 - AluSx SINE Alu -9 303 1 23 0 0 0 chr6 21826845 21826868 -167452686 + AT_rich Low_complexity Low_complexity 1 23 0 338 344 8 0 chr6 21826999 21827130 -167452424 + Charlie8 DNA MER1_type 129 260 -2157 394 306 50 88 chr6 21827818 21828135 -167451419 - L2 LINE L2 -6 3266 2962 2345 91 0 3 chr6 21828232 21828528 -167451026 - AluSq SINE Alu -18 295 1 219 316 0 25 chr6 21828867 21828946 -167450608 + L2 LINE L2 3196 3272 0 1191 204 27 4 chr6 21829456 21829716 -167449838 + L1MD3 LINE L1 7730 7995 0 22 35 0 0 chr6 21830204 21830233 -167449321 + AT_rich Low_complexity Low_complexity 1 29 0 2268 118 0 0 chr6 21830484 21830790 -167448764 + AluSx SINE Alu 1 306 -6 1692 251 136 36 chr6 21831794 21832462 -167447092 + L2 LINE L2 1957 2691 -623 2321 102 0 0 chr6 21832664 21832959 -167446595 - AluSx SINE Alu -17 295 1 211 341 45 38 chr6 21832962 21833094 -167446460 - MIR3 SINE MIR -43 165 33 387 0 0 0 chr6 21833112 21833155 -167446399 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1301 198 0 0 chr6 21833754 21833971 -167445583 - AluJb SINE Alu -95 217 1 498 279 49 46 chr6 21836897 21837266 -167442288 + L1ME4a LINE L1 5719 6088 -33 206 160 60 0 chr6 21837272 21837322 -167442232 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 2640 48 0 3 chr6 21837540 21837852 -167441702 + AluY SINE Alu 1 311 0 209 296 178 33 chr6 21837917 21838069 -167441485 + L2 LINE L2 2918 3091 -181 1793 179 38 52 chr6 21840560 21840875 -167438679 - L1ME LINE L1 -494 5672 5363 1746 136 0 101 chr6 21840875 21841213 -167438341 - AluJb SINE Alu -8 304 1 1793 179 38 52 chr6 21841213 21841322 -167438232 - L1ME LINE L1 -803 5363 5254 2076 185 82 55 chr6 21841344 21841726 -167437828 + L1M4 LINE L1 4612 4982 -1164 936 218 35 0 chr6 21841726 21841896 -167437658 - MER45A DNA AcHobo -1 177 2 2076 185 82 55 chr6 21841896 21842044 -167437510 + L1M4 LINE L1 4982 5164 -982 2235 106 3 0 chr6 21842044 21842336 -167437218 + AluSq SINE Alu 5 297 -16 2076 185 82 55 chr6 21842336 21842410 -167437144 + L1M4 LINE L1 5164 5234 -912 386 288 54 95 chr6 21842444 21842666 -167436888 - MIR SINE MIR -30 232 20 220 226 0 69 chr6 21846048 21846150 -167433404 + C-rich Low_complexity Low_complexity 2 96 0 195 42 0 0 chr6 21846753 21846777 -167432777 + (CGG)n Simple_repeat Simple_repeat 3 26 0 21 57 0 0 chr6 21847080 21847115 -167432439 + GC_rich Low_complexity Low_complexity 1 35 0 31 44 0 0 chr6 21848664 21848709 -167430845 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr6 21850582 21850604 -167428950 + AT_rich Low_complexity Low_complexity 1 22 0 342 318 166 15 chr6 21853234 21853571 -167425983 + L2 LINE L2 2267 2654 -660 223 277 40 30 chr6 21854880 21854906 -167424648 - MIR3 SINE MIR -6 202 178 2253 108 3 10 chr6 21854906 21855220 -167424334 + AluSx SINE Alu 1 312 0 223 277 40 30 chr6 21855220 21855294 -167424260 - MIR3 SINE MIR -30 178 101 934 217 40 54 chr6 21855556 21855832 -167423722 + L1M4 LINE L1 4856 5127 -1019 445 270 66 51 chr6 21855901 21856121 -167423433 + MIR3 SINE MIR 1 216 -46 315 266 85 96 chr6 21856121 21856158 -167423396 - MER5A DNA MER1_type 0 189 153 2492 70 3 0 chr6 21856158 21856456 -167423098 + AluSp SINE Alu 1 299 -14 315 266 85 96 chr6 21856456 21856606 -167422948 - MER5A DNA MER1_type -36 153 4 337 204 69 0 chr6 21857453 21857530 -167422024 + MIR SINE MIR 35 120 -88 267 229 36 136 chr6 21858560 21858626 -167420928 - MIR3 SINE MIR -52 156 110 1764 193 0 10 chr6 21858626 21858937 -167420617 + AluJo SINE Alu 1 308 -4 267 229 36 136 chr6 21858937 21859010 -167420544 - MIR3 SINE MIR -98 110 31 3418 141 32 17 chr6 21861142 21861732 -167417822 - L1MA9 LINE L1 0 6312 5714 5317 111 96 126 chr6 21862291 21863870 -167415684 - pTR5 LTR ERV1 0 2438 741 876 193 35 12 chr6 21864261 21864432 -167415122 + MER45A DNA AcHobo 4 178 0 198 239 0 0 chr6 21866480 21866551 -167413003 + (CA)n Simple_repeat Simple_repeat 2 72 0 201 39 0 0 chr6 21867241 21867267 -167412287 + (T)n Simple_repeat Simple_repeat 1 26 0 465 286 21 7 chr6 21867505 21867645 -167411909 + MER5B DNA MER1_type 32 173 -5 987 181 12 0 chr6 21867657 21867828 -167411726 - MER5B DNA MER1_type 0 178 6 2171 121 3 0 chr6 21871395 21871700 -167407854 + AluSx SINE Alu 1 306 -6 406 288 0 61 chr6 21876307 21876439 -167403115 + MIR3 SINE MIR 1 124 -84 207 108 27 0 chr6 21876448 21876485 -167403069 + (TTG)n Simple_repeat Simple_repeat 3 40 0 276 186 0 0 chr6 21876992 21877051 -167402503 + (CA)n Simple_repeat Simple_repeat 1 59 0 182 245 41 0 chr6 21877626 21877675 -167401879 + L2 LINE L2 3261 3311 -2 1152 188 34 5 chr6 21878487 21878695 -167400859 + MER20 DNA MER1_type 1 214 -5 2053 101 34 24 chr6 21878997 21879293 -167400261 + AluSq SINE Alu 2 300 -13 2158 110 3 7 chr6 21879887 21880196 -167399358 - AluSx SINE Alu -4 308 1 548 118 24 0 chr6 21880226 21880311 -167399243 + L1MA4 LINE L1 6208 6294 -6 584 294 35 41 chr6 21880428 21880625 -167398929 - MIR SINE MIR -19 243 48 2904 156 11 85 chr6 21880720 21880840 -167398714 - L1MD3 LINE L1 -6 7989 7862 2306 108 0 0 chr6 21880840 21881145 -167398409 - AluSq SINE Alu -8 305 1 2904 156 11 85 chr6 21881145 21881658 -167397896 - L1MD3 LINE L1 -133 7862 7403 266 216 102 57 chr6 21881659 21881747 -167397807 - MLT1F1 LTR MaLR -443 124 33 811 157 0 7 chr6 21881754 21881901 -167397653 - L1MC3 LINE L1 -697 7088 6943 268 209 90 0 chr6 21882067 21882134 -167397420 - MER91C DNA MER1_type -32 108 36 661 152 88 16 chr6 21882774 21882899 -167396655 - FRAM SINE Alu 0 40 1 285 329 41 35 chr6 21882955 21883125 -167396429 + L2 LINE L2 3009 3179 -93 32 26 0 0 chr6 21883713 21883752 -167395802 + AT_rich Low_complexity Low_complexity 1 39 0 1474 159 56 0 chr6 21883783 21884035 -167395519 - L1MC1 LINE L1 -7 6326 6061 2430 154 73 5 chr6 21884036 21884433 -167395121 + MSTB LTR MaLR 3 426 0 975 169 6 0 chr6 21884435 21884595 -167394959 - L1MC1 LINE L1 -217 6116 5956 249 111 156 0 chr6 21884609 21884654 -167394900 - L1MC1 LINE L1 -505 5828 5777 892 226 36 9 chr6 21884660 21884881 -167394673 - L1ME3A LINE L1 -5 6165 5939 236 250 17 0 chr6 21885439 21885499 -167394055 + (CA)n Simple_repeat Simple_repeat 2 62 0 455 275 112 39 chr6 21886074 21886252 -167393302 - MIR SINE MIR -9 253 63 2745 196 133 75 chr6 21886925 21887570 -167391984 + L1MC3 LINE L1 6706 7423 -362 1771 99 0 0 chr6 21887570 21887793 -167391761 - AluSc SINE Alu -86 223 1 2745 196 133 75 chr6 21887793 21888082 -167391472 + L1MC3 LINE L1 7423 7694 -91 231 282 45 55 chr6 21889005 21889115 -167390439 + LTR67 LTR ERVL 93 201 -356 505 288 55 0 chr6 21889264 21889410 -167390144 + LTR67 LTR ERVL 393 546 -11 253 351 52 30 chr6 21889938 21890206 -167389348 - L2 LINE L2 -343 2971 2698 491 198 0 11 chr6 21891398 21891489 -167388065 + Tigger5 DNA MER2_type 2234 2323 0 21 82 0 0 chr6 21892428 21892477 -167387077 + AT_rich Low_complexity Low_complexity 1 49 0 25 51 0 0 chr6 21892567 21892606 -167386948 + AT_rich Low_complexity Low_complexity 1 39 0 371 257 106 17 chr6 21892630 21892809 -167386745 - HAL1b LINE L1 -37 1311 1117 327 345 53 9 chr6 21892811 21892924 -167386630 - HAL1b LINE L1 -1165 183 66 198 0 0 0 chr6 21893003 21893025 -167386529 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 2465 39 11 0 chr6 21893035 21893318 -167386236 - AluY SINE Alu -25 286 1 9416 216 64 30 chr6 21893484 21894272 -167385282 - L1M3 LINE L1 -691 5489 4729 2375 75 0 16 chr6 21894272 21894579 -167384975 - AluY SINE Alu -9 302 1 9416 216 64 30 chr6 21894579 21896040 -167383514 - L1M3 LINE L1 -1451 4729 3137 1920 151 3 25 chr6 21896040 21896359 -167383195 - AluSx SINE Alu 0 312 1 9416 216 64 30 chr6 21896359 21896986 -167382568 - L1M3 LINE L1 -3043 3137 2533 317 226 12 0 chr6 21899593 21899677 -167379877 + CT-rich Low_complexity Low_complexity 1 85 0 936 260 72 40 chr6 21899685 21900062 -167379492 - L2 LINE L2 -1 3312 2924 1348 90 0 124 chr6 21900906 21901140 -167378414 + AluSg/x SINE Alu 82 286 -26 22 0 0 0 chr6 21901140 21901162 -167378392 + AT_rich Low_complexity Low_complexity 1 22 0 613 283 53 35 chr6 21901659 21901849 -167377705 + MIR SINE MIR 12 208 -54 1833 146 3 59 chr6 21901849 21902172 -167377382 + AluJb SINE Alu 1 305 -7 613 283 53 35 chr6 21902172 21902207 -167377347 + MIR SINE MIR 208 241 -21 258 32 0 0 chr6 21902344 21902375 -167377179 + (CA)n Simple_repeat Simple_repeat 1 31 0 3045 158 41 16 chr6 21902536 21903043 -167376511 - MLT2B1 LTR ERVL 0 520 1 451 333 13 13 chr6 21903257 21903413 -167376141 + MER5B DNA MER1_type 23 178 0 253 246 82 118 chr6 21903419 21903529 -167376025 - MIR SINE MIR -55 153 48 2528 69 3 0 chr6 21903839 21904142 -167375412 + AluY SINE Alu 1 304 -7 290 237 75 43 chr6 21904551 21904644 -167374910 - MIR SINE MIR -68 140 45 3695 46 7 0 chr6 21906126 21906558 -167372996 + L1PA8 LINE L1 5737 6171 -1 228 179 54 18 chr6 21907266 21907322 -167372232 + HAL1 LINE L1 1451 1508 -999 207 316 18 0 chr6 21907434 21907491 -167372063 - L2 LINE L2 -4 3309 3252 447 258 73 22 chr6 21908098 21908276 -167371278 - MIR SINE MIR -7 255 69 4356 173 81 26 chr6 21908321 21908476 -167371078 - MER6 DNA MER2_type 0 865 720 198 0 0 0 chr6 21908476 21908498 -167371056 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2151 79 22 4 chr6 21908498 21908776 -167370778 - AluY SINE Alu -28 283 1 4356 173 81 26 chr6 21908776 21909439 -167370115 - MER6 DNA MER2_type -144 721 1 429 272 64 67 chr6 21909440 21909651 -167369903 + MIR SINE MIR 45 258 -4 2593 66 0 0 chr6 21909652 21909956 -167369598 - AluY SINE Alu -7 304 1 375 41 0 0 chr6 21910182 21910231 -167369323 + (TC)n Simple_repeat Simple_repeat 2 50 0 191 133 0 0 chr6 21910397 21910427 -167369127 - L2 LINE L2 -7 3306 3277 232 250 0 19 chr6 21912807 21912859 -167366695 + L3 LINE CR1 1526 1576 -1 251 232 81 40 chr6 21913006 21913105 -167366449 + MER103 DNA DNA 55 157 -9 2432 99 0 0 chr6 21913130 21913443 -167366111 - AluSq SINE Alu 0 313 1 1544 241 45 8 chr6 21913645 21914047 -167365507 - L1ME1 LINE L1 -1 6165 5749 198 330 40 30 chr6 21915133 21915233 -167364321 - L2 LINE L2 -51 3221 3121 389 191 29 0 chr6 21916016 21916084 -167363470 - MLT1B LTR MaLR -22 368 299 * 590 184 0 0 chr6 21916082 21916180 -167363374 - Tigger3(Golem) DNA MER2_type -2931 98 1 180 77 0 0 chr6 21916184 21916210 -167363344 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 188 328 0 15 chr6 21916217 21916284 -167363270 + MIR SINE MIR 59 124 -84 203 208 42 0 chr6 21918502 21918550 -167361004 - L2 LINE L2 -1 3271 3222 274 245 64 21 chr6 21918718 21918812 -167360742 + MIR3 SINE MIR 101 198 -10 314 215 15 0 chr6 21920712 21920777 -167358777 - MIR SINE MIR 0 262 197 483 60 0 0 chr6 21920777 21920844 -167358710 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 681 258 92 0 chr6 21920872 21921035 -167358519 - MIR SINE MIR -73 189 12 217 204 0 37 chr6 21921939 21921993 -167357561 - L2 LINE L2 0 3313 3262 2026 154 3 3 chr6 21922295 21922606 -167356948 + AluSx SINE Alu 1 311 -1 286 235 59 12 chr6 21923062 21923147 -167356407 + L1MC4 LINE L1 6614 6702 -1340 183 80 0 0 chr6 21923148 21923173 -167356381 + (CATA)n Simple_repeat Simple_repeat 4 28 0 1392 146 0 0 chr6 21923255 21923454 -167356100 + L1PA16 LINE L1 5 203 -6646 * 8668 200 47 23 chr6 21923448 21928315 -167351239 + L1PA16 LINE L1 1661 6869 0 1803 147 55 0 chr6 21931991 21932283 -167347271 - AluJo SINE Alu 0 312 5 286 195 24 24 chr6 21932530 21932612 -167346942 + MER112 DNA MER1_type 36 117 -143 1262 87 0 0 chr6 21932615 21932776 -167346778 - AluSg/x SINE Alu -12 300 140 275 342 86 8 chr6 21933643 21933760 -167345794 - L2 LINE L2 0 3313 3188 344 255 21 11 chr6 21934258 21934352 -167345202 - MER5A DNA MER1_type -24 165 71 980 322 69 53 chr6 21934606 21935174 -167344380 - L3 LINE CR1 -673 904 328 1614 153 133 50 chr6 21935714 21936113 -167343441 - MSTB1 LTR MaLR 0 432 1 1667 198 3 3 chr6 21936151 21936454 -167343100 - AluJo SINE Alu -1 311 9 356 151 70 23 chr6 21936567 21936653 -167342901 + MER58 DNA MER1_type 2316 2405 -15 316 275 107 15 chr6 21938801 21938932 -167340622 - MIR3 SINE MIR -26 182 40 2171 97 0 39 chr6 21939066 21939398 -167340156 + AluSg SINE Alu 1 310 0 795 267 35 69 chr6 21940188 21940563 -167338991 - L2 LINE L2 -15 3298 2937 463 246 161 33 chr6 21940583 21940794 -167338760 - L2 LINE L2 -658 2656 2419 334 295 0 48 chr6 21940816 21940921 -167338633 + L2 LINE L2 3214 3313 0 190 333 64 13 chr6 21941921 21941999 -167337555 - MIR3 SINE MIR -34 174 93 320 356 37 12 chr6 21942272 21942435 -167337119 + MIR3 SINE MIR 39 205 -3 225 193 0 72 chr6 21942718 21942801 -167336753 + L1ME4a LINE L1 5999 6075 -46 239 390 48 0 chr6 21943328 21943515 -167336039 - MER117 DNA MER1_type 0 197 2 2177 104 0 0 chr6 21943533 21943839 -167335715 - AluSg SINE Alu 0 306 1 1745 233 8 14 chr6 21943961 21944330 -167335224 - MLT1F LTR MaLR -174 368 2 219 289 0 66 chr6 21944362 21944438 -167335116 - L2 LINE L2 -86 3186 3116 459 289 58 42 chr6 21944515 21944705 -167334849 + MLT1J2 LTR MaLR 45 237 -213 291 366 11 26 chr6 21945134 21945325 -167334229 + L2 LINE L2 2616 2803 -511 199 300 50 0 chr6 21945354 21945414 -167334140 - L2 LINE L2 0 3313 3251 707 143 118 25 chr6 21945449 21945568 -167333986 + FLAM_C SINE Alu 2 131 -12 2987 152 75 2 chr6 21945799 21946319 -167333235 - L1MD3 LINE L1 -34 7961 7404 332 242 0 0 chr6 21946319 21946385 -167333169 - MLT1F1 LTR MaLR -442 125 60 330 162 6 229 chr6 21946396 21946575 -167332979 - L1MC3 LINE L1 -674 7111 6973 617 322 27 44 chr6 21946719 21947017 -167332537 + L2 LINE L2 3021 3313 0 205 137 59 0 chr6 21947449 21947500 -167332054 + GA-rich Low_complexity Low_complexity 3 56 0 225 0 0 0 chr6 21947512 21947537 -167332017 + (TCTCCC)n Simple_repeat Simple_repeat 5 29 0 5958 61 20 61 chr6 21947539 21948442 -167331112 + SVA Other Other 1 866 -520 6768 73 11 54 chr6 21948505 21950203 -167329351 + SVA Other Other 433 1542 0 364 327 13 53 chr6 21951155 21951305 -167328249 + L3 LINE CR1 1426 1569 -8 22 0 0 0 chr6 21951378 21951400 -167328154 + AT_rich Low_complexity Low_complexity 1 22 0 277 245 47 28 chr6 21951565 21951671 -167327883 + LTR16C LTR ERVL 1 108 -383 * 2126 191 61 22 chr6 21951656 21952116 -167327438 + MLT1F LTR MaLR 75 542 0 511 240 116 26 chr6 21952456 21952682 -167326872 - L1ME4a LINE L1 -238 5883 5634 2146 115 11 0 chr6 21952682 21952969 -167326585 + AluSg SINE Alu 7 296 -14 2105 128 0 118 chr6 21953114 21953496 -167326058 - MER1B DNA MER1_type 0 337 1 329 319 103 60 chr6 21953523 21953824 -167325730 + L2 LINE L2 111 424 -2890 190 264 207 0 chr6 21954011 21954098 -167325456 + L2 LINE L2 721 825 -2489 2147 111 7 0 chr6 21954424 21954713 -167324841 - AluSx SINE Alu -7 305 15 300 260 118 66 chr6 21955281 21955781 -167323773 - L1MEd LINE L1 -2521 3608 3083 2951 223 53 44 chr6 21955839 21956732 -167322822 - L1ME1 LINE L1 -9 6157 5257 375 290 134 48 chr6 21956756 21957429 -167322125 - L1MEd LINE L1 -3177 2952 2204 2777 68 32 16 chr6 21957429 21957798 -167321756 - THE1C LTR MaLR 0 375 1 375 290 134 48 chr6 21957798 21957890 -167321664 - L1MEd LINE L1 -3925 2204 2121 1267 199 97 16 chr6 21957905 21958309 -167321245 - L1ME2 LINE L1 -9 6155 5715 23 0 0 0 chr6 21958785 21958808 -167320746 + AT_rich Low_complexity Low_complexity 1 23 0 7343 159 41 55 chr6 21958895 21959866 -167319688 - L1MA6 LINE L1 0 6300 5317 1967 150 0 0 chr6 21959866 21960153 -167319401 - AluSx SINE Alu -25 287 1 7343 159 41 55 chr6 21960153 21961656 -167317898 - L1MA6 LINE L1 -983 5317 3876 185 0 40 0 chr6 21961656 21961681 -167317873 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7343 159 41 55 chr6 21961681 21962016 -167317538 - L1MA6 LINE L1 -2424 3876 3538 1030 275 149 31 chr6 21962149 21962892 -167316662 - L1MEd LINE L1 -4880 1239 409 595 325 60 15 chr6 21962900 21963235 -167316319 - L1MEd LINE L1 -5759 360 11 587 311 109 0 chr6 21963244 21963482 -167316072 + L2 LINE L2 1823 2086 -1228 2085 134 3 0 chr6 21963654 21963946 -167315608 - AluSx SINE Alu -19 293 1 591 290 111 14 chr6 21964077 21964271 -167315283 + MIR SINE MIR 15 234 -28 1759 159 36 28 chr6 21964271 21964629 -167314925 - MER46B DNA MER2_type 0 236 1 591 290 111 14 chr6 21964629 21964651 -167314903 + MIR SINE MIR 234 252 -10 2505 82 0 0 chr6 21965020 21965324 -167314230 - AluSc SINE Alu -5 304 1 527 255 150 45 chr6 21965938 21966081 -167313473 - MER102b DNA MER1_type -1108 320 193 1931 133 3 3 chr6 21966081 21966367 -167313187 - AluSx SINE Alu -1 311 26 527 255 150 45 chr6 21966367 21966509 -167313045 - MER102b DNA MER1_type -1235 193 5 3202 19 5 0 chr6 21966899 21967269 -167312285 + L1PA4 LINE L1 5784 6155 0 258 254 52 45 chr6 21967354 21967488 -167312066 + MLT1J LTR MaLR 374 508 -3 23 0 0 0 chr6 21967496 21967519 -167312035 + AT_rich Low_complexity Low_complexity 1 23 0 690 176 109 114 chr6 21970473 21970849 -167308705 - LTR37B LTR ERV1 0 468 95 404 119 0 0 chr6 21970957 21971024 -167308530 - L1PA11 LINE L1 0 6174 6108 263 311 19 0 chr6 21971161 21971264 -167308290 - LTR37B LTR ERV1 -348 120 16 2113 186 89 43 chr6 21971299 21971782 -167307772 + MLT1D LTR MaLR 1 505 0 2151 118 7 3 chr6 21972303 21972599 -167306955 - AluSx SINE Alu -15 297 1 2159 145 3 0 chr6 21975424 21975735 -167303819 - AluSq SINE Alu 0 313 2 2210 104 0 13 chr6 21975762 21976071 -167303483 - AluY SINE Alu -6 305 1 2397 84 0 0 chr6 21976181 21976492 -167303062 - AluY SINE Alu 0 311 1 623 74 0 21 chr6 21976492 21976587 -167302967 - AluSg/x SINE Alu -3 306 214 2134 102 13 7 chr6 21976725 21977028 -167302526 + AluSc SINE Alu 1 305 -4 625 249 153 68 chr6 21977134 21977592 -167301962 - MLT1H LTR MaLR -9 540 44 354 316 63 57 chr6 21977970 21978128 -167301426 + MER91A DNA MER1_type 4 162 -34 263 77 0 77 chr6 21978205 21978257 -167301297 - MER5C DNA MER1_type -15 309 262 300 254 82 9 chr6 21978416 21978526 -167301028 - MER5C DNA MER1_type -201 123 6 838 246 12 74 chr6 21979095 21979158 -167300396 - MIR SINE MIR -3 259 194 2168 88 0 67 chr6 21979158 21979488 -167300066 - AluSg SINE Alu -2 308 1 838 246 12 74 chr6 21979488 21979680 -167299874 - MIR SINE MIR -68 194 20 225 239 0 0 chr6 21979924 21979970 -167299584 + L2 LINE L2 3255 3300 -13 400 263 8 8 chr6 21980330 21980448 -167299106 + HsTC2 DNA Tc2 1518 1635 -263 567 290 36 10 chr6 21980657 21980850 -167298704 - LTR33 LTR ERVL -315 206 9 * 639 207 70 18 chr6 21980844 21981071 -167298483 + HsTC2 DNA Tc2 1632 1870 -28 365 293 38 38 chr6 21981116 21981355 -167298199 - MLT1L LTR MaLR -8 607 369 1989 154 30 0 chr6 21981783 21982082 -167297472 - AluJb SINE Alu -4 308 1 367 304 22 7 chr6 21982082 21982217 -167297337 - LTR67 LTR ERVL -6 551 415 256 164 0 73 chr6 21982305 21982360 -167297194 + FRAM/FAM SINE Alu 1 41 -134 180 0 0 0 chr6 21982393 21982413 -167297141 + (CAA)n Simple_repeat Simple_repeat 2 21 0 356 299 48 30 chr6 21982485 21982652 -167296902 - LTR67 LTR ERVL -364 193 24 434 257 70 12 chr6 21983177 21983348 -167296206 - MIR SINE MIR 0 262 82 417 306 62 59 chr6 21987571 21987727 -167291827 + L2 LINE L2 2463 2617 -697 2029 134 7 7 chr6 21987727 21988026 -167291528 - AluJb SINE Alu -13 299 1 417 306 62 59 chr6 21988026 21988193 -167291361 + L2 LINE L2 2617 2787 -527 417 198 0 10 chr6 21988293 21988394 -167291160 - L1M4 LINE L1 -2110 4036 3937 351 268 173 25 chr6 21989755 21990113 -167289441 + L1ME4a LINE L1 5484 5894 -227 324 214 96 86 chr6 21990189 21990376 -167289178 + L1ME4a LINE L1 5932 6120 -1 185 302 0 23 chr6 21990484 21990527 -167289027 - L2 LINE L2 -28 3244 3203 * 439 355 55 11 chr6 21990493 21990676 -167288878 - MIR SINE MIR -31 231 41 22 35 0 0 chr6 21990744 21990773 -167288781 + AT_rich Low_complexity Low_complexity 1 29 0 554 239 76 35 chr6 21992996 21993193 -167286361 + L2 LINE L2 3109 3313 0 2315 108 3 0 chr6 21993206 21993511 -167286043 + AluSq SINE Alu 1 306 -7 343 227 43 64 chr6 21993634 21993775 -167285779 + MER104 DNA Tc2 28 165 -15 483 236 115 30 chr6 21993872 21994037 -167285517 - MER5A DNA MER1_type -4 185 7 1215 275 64 30 chr6 21994633 21995173 -167284381 + MLT1F1 LTR MaLR 11 567 0 246 326 69 29 chr6 21995183 21995358 -167284196 - MIR SINE MIR -67 195 14 397 359 29 6 chr6 21995375 21995545 -167284009 + MIR3 SINE MIR 32 205 -3 384 184 0 0 chr6 21997112 21997188 -167282366 - MER53 DNA DNA -113 76 1 238 284 15 15 chr6 21997224 21997291 -167282263 - MIR SINE MIR -125 83 17 698 248 44 26 chr6 21998059 21998285 -167281269 + L1ME1 LINE L1 5932 6161 -5 305 333 8 24 chr6 21998363 21998486 -167281068 + L3 LINE CR1 1030 1150 -427 302 318 246 17 chr6 21998487 21998723 -167280831 + L3 LINE CR1 1279 1568 -9 835 208 58 0 chr6 22000151 22000324 -167279230 - MER5A DNA MER1_type -6 183 1 197 250 39 39 chr6 22000407 22000459 -167279095 + MIR SINE MIR 18 69 -193 352 221 123 41 chr6 22001060 22001182 -167278372 - MIR SINE MIR -111 151 20 378 329 89 14 chr6 22001458 22001604 -167277950 - L2 LINE L2 0 3272 3116 308 361 101 12 chr6 22001851 22002020 -167277534 - L2 LINE L2 -220 3052 2869 217 384 75 8 chr6 22002459 22002592 -167276962 + MER5A DNA MER1_type 46 187 -2 23 33 0 0 chr6 22002657 22002687 -167276867 + AT_rich Low_complexity Low_complexity 1 30 0 1906 202 31 75 chr6 22002696 22003310 -167276244 - L1ME2 LINE L1 0 6164 5578 207 277 0 0 chr6 22005360 22005407 -167274147 + L2 LINE L2 3258 3304 -9 921 149 41 10 chr6 22005864 22006059 -167273495 + L1MB3 LINE L1 5289 5489 -691 672 174 19 7 chr6 22006064 22006219 -167273335 + GA-rich Low_complexity Low_complexity 3 159 0 3588 148 56 3 chr6 22006219 22006882 -167272672 + L1MB3 LINE L1 5484 6181 -2 2239 78 0 0 chr6 22006887 22007182 -167272372 - AluY SINE Alu 0 305 11 1199 205 73 80 chr6 22008609 22009033 -167270521 + MLT1J1 LTR MaLR 1 421 -25 295 269 13 0 chr6 22009043 22009121 -167270433 + MER69B DNA AcHobo 24 102 -1124 2625 241 123 14 chr6 22009125 22010023 -167269531 + MER69B DNA AcHobo 230 1224 -2 392 311 12 0 chr6 22010558 22010696 -167268858 - MIR SINE MIR -59 149 8 1960 138 3 0 chr6 22011087 22011401 -167268153 + AluSx SINE Alu 1 315 0 1261 230 94 40 chr6 22011484 22011858 -167267696 + MSTD LTR MaLR 1 394 -2 2051 122 24 113 chr6 22012801 22013218 -167266336 + MLT1B LTR MaLR 9 388 -2 2233 111 0 19 chr6 22013782 22014089 -167265465 + AluSc SINE Alu 1 301 -8 314 215 89 0 chr6 22014614 22014693 -167264861 - MER5A DNA MER1_type -95 94 9 22 0 0 0 chr6 22014822 22014844 -167264710 + AT_rich Low_complexity Low_complexity 1 22 0 247 233 75 15 chr6 22014971 22015104 -167264450 + L1MC/D LINE L1 5337 5477 -2331 290 289 33 25 chr6 22015174 22015292 -167264262 - MIR SINE MIR -65 143 32 267 200 9 55 chr6 22015458 22015568 -167263986 + (TA)n Simple_repeat Simple_repeat 2 106 0 451 286 62 49 chr6 22015651 22015955 -167263599 - L1ME4a LINE L1 -289 5832 5525 644 201 12 0 chr6 22016826 22016995 -167262559 + L1MA4 LINE L1 6122 6292 -8 222 62 0 0 chr6 22017288 22017320 -167262234 + (A)n Simple_repeat Simple_repeat 1 32 0 349 301 38 0 chr6 22018020 22018153 -167261401 - MIR3 SINE MIR -3 205 68 500 179 19 0 chr6 22018533 22018639 -167260915 + (CATA)n Simple_repeat Simple_repeat 2 109 0 2168 105 7 7 chr6 22018639 22018933 -167260621 - AluSq SINE Alu -19 294 1 465 298 48 27 chr6 22018959 22019147 -167260407 + MIR SINE MIR 1 192 -70 380 68 0 243 chr6 22020565 22020668 -167258886 + MADE1 DNA Mariner 1 78 -2 338 300 52 31 chr6 22020669 22020975 -167258579 - L2 LINE L2 -245 3027 2724 1535 218 65 40 chr6 22021007 22021453 -167258101 + MLT1C LTR MaLR 11 467 0 382 114 29 0 chr6 22021703 22021773 -167257781 + (TG)n Simple_repeat Simple_repeat 1 72 0 618 305 36 46 chr6 22023204 22023692 -167255862 - L1MC4a LINE L1 -753 5591 5486 207 326 79 11 chr6 22024878 22024942 -167254612 - L3 LINE CR1 -58 1519 1446 2175 111 14 3 chr6 22024942 22025239 -167254315 - AluSx SINE Alu -12 300 1 207 326 79 11 chr6 22025239 22025263 -167254291 - L3 LINE CR1 -131 1446 1425 298 272 56 16 chr6 22026787 22026912 -167252642 - MIR SINE MIR -62 200 71 5545 125 36 19 chr6 22027312 22027543 -167252011 + L1MA8 LINE L1 4680 4906 -1385 2349 174 47 2 chr6 22027543 22027951 -167251603 - MSTB LTR MaLR 0 426 1 5545 125 36 19 chr6 22027951 22028832 -167250722 + L1MA8 LINE L1 4906 5829 -462 2233 97 0 31 chr6 22028832 22028969 -167250585 + AluSx SINE Alu 1 141 -171 2298 95 3 0 chr6 22028969 22029264 -167250290 + AluY SINE Alu 1 296 -15 2233 97 0 31 chr6 22029264 22029447 -167250107 + AluSx SINE Alu 141 311 -1 5545 125 36 19 chr6 22029447 22029768 -167249786 + L1MA8 LINE L1 5829 6143 -148 867 156 25 0 chr6 22029912 22030072 -167249482 + L1MA8 LINE L1 6124 6287 -4 2208 128 0 0 chr6 22030083 22030387 -167249167 + AluSx SINE Alu 1 304 -8 451 224 75 9 chr6 22031179 22031343 -167248211 + MIR SINE MIR 20 192 -63 2081 173 68 5 chr6 22031622 22032021 -167247533 + MSTA LTR MaLR 5 428 0 1651 175 14 20 chr6 22032027 22032319 -167247235 - AluJo SINE Alu -13 299 10 3666 125 68 25 chr6 22032319 22033224 -167246330 + LTR12 LTR ERV1 3 714 0 463 286 54 112 chr6 22034655 22035103 -167244451 + L2 LINE L2 2809 3230 -42 26 30 0 0 chr6 22035163 22035196 -167244358 + AT_rich Low_complexity Low_complexity 1 33 0 469 183 70 9 chr6 22035317 22035432 -167244122 + MIR SINE MIR 79 200 -62 2653 68 0 0 chr6 22035637 22035946 -167243608 - AluSg SINE Alu -1 309 1 391 228 101 13 chr6 22036186 22036335 -167243219 + L1ME3A LINE L1 5913 6074 -96 207 69 0 0 chr6 22036402 22036431 -167243123 + (CA)n Simple_repeat Simple_repeat 1 29 0 252 0 0 0 chr6 22036634 22036662 -167242892 + (TC)n Simple_repeat Simple_repeat 2 29 0 226 200 30 80 chr6 22037358 22037458 -167242096 + L2 LINE L2 2564 2658 -656 243 311 17 25 chr6 22037782 22037901 -167241653 + L2 LINE L2 3155 3272 0 263 238 70 98 chr6 22037905 22038048 -167241506 - MIR3 SINE MIR -50 158 20 181 233 47 35 chr6 22038067 22038153 -167241401 - L3b LINE CR1 -351 1232 1146 3633 170 32 17 chr6 22038496 22039219 -167240335 - L1MB4 LINE L1 -1 6179 5446 886 198 184 43 chr6 22040265 22040702 -167238852 + MLT1E1 LTR MaLR 1 580 -74 2041 101 18 0 chr6 22040775 22041051 -167238503 - AluSp SINE Alu -1 312 32 4269 137 98 75 chr6 22041052 22042043 -167237511 + pTR5 LTR ERV1 7 443 -271 187 53 26 26 chr6 22042043 22042081 -167237473 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 4269 137 98 75 chr6 22042081 22042334 -167237220 + pTR5 LTR ERV1 443 689 -25 201 39 0 0 chr6 22043137 22043163 -167236391 + (TG)n Simple_repeat Simple_repeat 2 27 0 463 188 27 89 chr6 22043811 22043923 -167235631 + MLT1C LTR MaLR 1 105 -362 416 143 0 0 chr6 22043914 22043977 -167235577 + MLT1C LTR MaLR 290 352 -115 * 1740 157 3 42 chr6 22043979 22044291 -167235263 + MLT1B LTR MaLR 91 390 0 349 247 160 40 chr6 22044770 22044920 -167234634 - MER5A DNA MER1_type -9 180 13 294 277 45 23 chr6 22045794 22045932 -167233622 - MIR3 SINE MIR -22 186 45 238 262 47 84 chr6 22046114 22046221 -167233333 + MER5B DNA MER1_type 2 104 -74 * 321 183 28 4 chr6 22046220 22046330 -167233224 + MER5A DNA MER1_type 35 189 0 196 346 13 13 chr6 22046352 22046430 -167233124 + MER5B DNA MER1_type 56 133 -45 1479 249 25 6 chr6 22046750 22047108 -167232446 + MLT1A1 LTR MaLR 1 365 0 404 291 122 5 chr6 22047138 22047334 -167232220 + MIR SINE MIR 29 247 -15 2336 71 0 0 chr6 22048547 22048862 -167230692 + AluY SINE Alu 1 315 0 701 271 21 5 chr6 22049370 22049562 -167229992 - MIR SINE MIR -15 247 53 527 252 91 24 chr6 22049788 22049998 -167229556 - MLT1G1 LTR MaLR -269 326 103 261 0 0 0 chr6 22050001 22050030 -167229524 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 191 326 14 64 chr6 22050030 22050171 -167229383 - L2 LINE L2 -428 2886 2753 186 350 88 10 chr6 22051908 22052102 -167227452 - L2 LINE L2 -482 2832 2624 4858 111 0 0 chr6 22052115 22052792 -167226762 - L1PA13 LINE L1 -39 6124 5448 2396 281 24 25 chr6 22053015 22053690 -167225864 - MER115 DNA AcHobo -17 676 3 195 139 0 0 chr6 22053723 22053759 -167225795 + (A)n Simple_repeat Simple_repeat 1 36 0 258 312 118 0 chr6 22054585 22054678 -167224876 - MIR SINE MIR -110 152 49 214 282 209 9 chr6 22056488 22056598 -167222956 + MIR SINE MIR 87 218 -44 1343 183 48 41 chr6 22056822 22057112 -167222442 + AluJo SINE Alu 1 292 -20 894 144 63 0 chr6 22057645 22057819 -167221735 - L1MA7 LINE L1 -3 6288 6104 2357 117 10 0 chr6 22058359 22058668 -167220886 - AluSx SINE Alu 0 312 1 2278 100 0 17 chr6 22060981 22061281 -167218273 + AluSq SINE Alu 1 295 -18 221 57 29 0 chr6 22061356 22061391 -167218163 + (CA)n Simple_repeat Simple_repeat 1 36 0 231 36 0 0 chr6 22061906 22061934 -167217620 + (GA)n Simple_repeat Simple_repeat 1 28 0 2326 114 0 0 chr6 22062250 22062556 -167216998 + AluSx SINE Alu 1 306 -6 1519 190 13 30 chr6 22063279 22063584 -167215970 + AluJo SINE Alu 1 300 -12 288 0 0 0 chr6 22064143 22064175 -167215379 + (TG)n Simple_repeat Simple_repeat 1 32 0 234 0 0 0 chr6 22064174 22064200 -167215354 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 884 149 0 8 chr6 22064320 22064476 -167215078 + AluJb SINE Alu 155 309 0 2380 100 0 0 chr6 22066729 22067039 -167212515 + AluSx SINE Alu 1 310 -2 542 308 110 9 chr6 22068342 22068569 -167210985 + MIR SINE MIR 12 261 -1 240 35 0 0 chr6 22069293 22069322 -167210232 + (ATG)n Simple_repeat Simple_repeat 1 29 0 405 58 0 0 chr6 22069889 22069941 -167209613 + (CA)n Simple_repeat Simple_repeat 2 53 0 1686 186 223 39 chr6 22069946 22070403 -167209151 + MLT1F LTR MaLR 2 542 0 1705 186 7 10 chr6 22070643 22070938 -167208616 - AluJo SINE Alu -18 294 1 1106 179 115 8 chr6 22071795 22072030 -167207524 - LOR1a LTR ERV1 0 497 238 379 234 206 9 chr6 22074147 22074254 -167205300 + MIR SINE MIR 20 147 -115 212 172 52 0 chr6 22075064 22075122 -167204432 + (TA)n Simple_repeat Simple_repeat 1 61 0 2118 256 46 11 chr6 22075122 22075681 -167203873 + L1MD2 LINE L1 5333 5916 -443 2348 165 64 12 chr6 22075681 22076086 -167203468 - MSTB LTR MaLR 0 426 1 2118 256 46 11 chr6 22076086 22076136 -167203418 + L1MD2 LINE L1 5916 5963 -396 815 155 14 0 chr6 22076295 22076437 -167203117 - L1MA6 LINE L1 -2 6298 6155 245 296 0 37 chr6 22076546 22076627 -167202927 + L2 LINE L2 3182 3259 -13 183 344 33 0 chr6 22077040 22077101 -167202453 - L3 LINE CR1 -1 1576 1514 216 163 0 0 chr6 22077267 22077310 -167202244 + (TTG)n Simple_repeat Simple_repeat 3 45 0 299 291 28 44 chr6 22078680 22078862 -167200692 + L1ME4a LINE L1 5728 5906 -215 2177 205 93 17 chr6 22079104 22079587 -167199967 + MLT2B1 LTR ERVL 1 520 0 230 271 0 24 chr6 22080571 22080656 -167198898 + HAL1b LINE L1 1175 1257 -91 1575 192 0 0 chr6 22080660 22080921 -167198633 + Tigger7 DNA MER2_type 4 264 -469 594 184 0 0 chr6 22080924 22081022 -167198532 + Tigger7 DNA MER2_type 2490 2587 0 263 279 35 0 chr6 22081102 22081188 -167198366 - L2 LINE L2 -1 3271 3183 332 260 24 65 chr6 22081217 22081340 -167198214 - L2 LINE L2 -595 2719 2602 1839 170 150 42 chr6 22081379 22081831 -167197723 - MLT1D LTR MaLR -1 504 4 1778 160 38 7 chr6 22081866 22082159 -167197395 - AluJb SINE Alu -10 302 1 536 309 14 24 chr6 22082420 22082627 -167196927 - MIR SINE MIR -12 250 46 316 285 16 24 chr6 22082899 22083022 -167196532 + MIR SINE MIR 64 185 -77 214 234 21 0 chr6 22083196 22083243 -167196311 - L2 LINE L2 -6 3266 3219 1147 150 26 0 chr6 22083290 22083483 -167196071 + L1P5 LINE L1 3 200 -6663 3112 151 13 17 chr6 22083483 22084007 -167195547 + L1P5 LINE L1 634 1155 -5708 15037 197 43 21 chr6 22084009 22088684 -167190870 + L1P5 LINE L1 1311 6091 -771 7684 27 0 0 chr6 22088672 22090152 -167189402 + L1PA3 LINE L1 4695 6174 0 * 3232 82 7 7 chr6 22090152 22090581 -167188973 + L1P5 LINE L1 6079 6507 -360 218 220 17 0 chr6 22090581 22090640 -167188914 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 252 220 0 0 chr6 22090674 22090724 -167188830 + L1MC4 LINE L1 6654 6703 -1339 * 273 234 0 0 chr6 22090682 22090746 -167188808 - L1MC4 LINE L1 -1339 6703 6640 250 93 0 0 chr6 22090748 22090791 -167188763 - LTR66 LTR ERVL -174 436 394 2738 98 11 0 chr6 22090801 22091158 -167188396 + L1PB1 LINE L1 5791 6151 0 885 298 174 13 chr6 22092144 22092674 -167186880 + L2 LINE L2 2091 2705 -609 3105 179 52 92 chr6 22092677 22093524 -167186030 - L1MC4 LINE L1 -9 8033 7221 536 358 54 15 chr6 22093532 22093848 -167185706 + L2 LINE L2 2725 3053 -260 607 236 60 6 chr6 22094047 22094229 -167185325 + HAL1 LINE L1 1227 1418 -1089 1204 245 129 68 chr6 22094311 22095141 -167184413 + HAL1 LINE L1 1548 2428 -79 438 33 115 0 chr6 22095401 22095462 -167184092 - MADE1 DNA Mariner 0 80 13 727 236 66 39 chr6 22095631 22095889 -167183665 - L1ME3A LINE L1 -27 6143 5879 2557 268 104 36 chr6 22095919 22097184 -167182370 - L1ME3A LINE L1 -1825 4321 2970 25 31 0 0 chr6 22097229 22097261 -167182293 + AT_rich Low_complexity Low_complexity 1 32 0 2225 123 0 0 chr6 22097316 22097626 -167181928 - AluY SINE Alu -1 310 1 993 279 108 16 chr6 22098045 22098478 -167181076 + LTR16C LTR ERVL 18 490 -1 1925 130 22 0 chr6 22098666 22098969 -167180585 - AluSx SINE Alu 0 309 1 292 328 18 47 chr6 22099033 22099204 -167180350 + MIR SINE MIR 47 212 -50 2095 114 0 4 chr6 22099652 22099933 -167179621 + AluSx SINE Alu 1 280 -32 228 361 34 0 chr6 22100160 22100279 -167179275 - MIR3 SINE MIR -1 207 85 219 355 65 18 chr6 22100342 22100511 -167179043 - MIR SINE MIR -66 196 20 2272 92 0 3 chr6 22100666 22100961 -167178593 + AluSg SINE Alu 10 303 -7 222 118 0 0 chr6 22101008 22101042 -167178512 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 207 100 0 0 chr6 22102360 22102390 -167177164 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 386 252 30 23 chr6 22102991 22103122 -167176432 + L1ME4a LINE L1 5738 5869 -252 2075 122 3 3 chr6 22103255 22103543 -167176011 - AluSg SINE Alu -22 288 1 249 313 35 17 chr6 22103569 22103684 -167175870 + L1MC/D LINE L1 5445 5561 -2247 2242 138 32 19 chr6 22103849 22104016 -167175538 + MLT1B LTR MaLR 4 167 -223 2221 111 7 7 chr6 22104016 22104322 -167175232 + AluSx SINE Alu 1 306 -6 2242 138 32 19 chr6 22104322 22104525 -167175029 + MLT1B LTR MaLR 167 379 -11 268 275 0 84 chr6 22106015 22106146 -167173408 + MIR SINE MIR 22 141 -67 550 226 8 16 chr6 22106159 22106283 -167173271 + MER5B DNA MER1_type 1 123 -55 343 263 88 9 chr6 22107185 22107299 -167172255 + MIR SINE MIR 26 148 -114 214 349 64 0 chr6 22107834 22107943 -167171611 + L2 LINE L2 3157 3272 0 297 330 43 0 chr6 22108161 22108255 -167171299 - L2 LINE L2 -2 3270 3173 290 227 53 27 chr6 22108249 22108324 -167171230 + MER5B DNA MER1_type 96 172 -6 * 2945 0 0 0 chr6 22110712 22111023 -167168531 + AluYa5 SINE Alu 1 311 0 7460 117 52 29 chr6 22111650 22112274 -167167280 + Tigger3b DNA MER2_type 3 611 -2417 578 103 0 23 chr6 22112274 22112290 -167167264 - AluSp/q SINE Alu 0 313 298 241 59 0 0 chr6 22112290 22112324 -167167230 + (TTTG)n Simple_repeat Simple_repeat 3 88 0 578 103 0 23 chr6 22112324 22112394 -167167160 - AluSp/q SINE Alu -15 298 217 2107 104 18 0 chr6 22112325 22112605 -167166949 - AluSp SINE Alu -28 285 1 7460 117 52 29 chr6 22112605 22113163 -167166391 + Tigger3b DNA MER2_type 822 1231 0 358 305 8 15 chr6 22113883 22114014 -167165540 + MER94 DNA DNA 5 134 0 266 313 146 0 chr6 22114235 22114331 -167165223 - L2 LINE L2 -12 3260 3151 1629 147 9 59 chr6 22114361 22114681 -167164873 + AluJo SINE Alu 1 304 -8 889 199 0 79 chr6 22115122 22115308 -167164246 - MER3 DNA MER1_type -10 199 31 2184 113 0 3 chr6 22115308 22115600 -167163954 - AluSg SINE Alu -19 291 1 889 199 0 79 chr6 22115600 22115629 -167163925 - MER3 DNA MER1_type -178 31 1 260 321 71 9 chr6 22115989 22116101 -167163453 + MIR SINE MIR 48 166 -96 341 330 74 83 chr6 22116224 22116563 -167162991 + L2 LINE L2 2910 3245 -27 590 216 0 16 chr6 22117001 22117126 -167162428 - MER3 DNA MER1_type -10 199 77 485 261 22 72 chr6 22117608 22117788 -167161766 - MIR SINE MIR -10 252 82 2415 78 0 3 chr6 22118781 22119087 -167160467 - AluSg SINE Alu -5 305 1 1913 161 0 10 chr6 22119095 22119394 -167160160 - AluJo SINE Alu -16 296 1 198 0 0 0 chr6 22119409 22119431 -167160123 + (TAA)n Simple_repeat Simple_repeat 2 23 0 262 265 0 39 chr6 22119698 22119800 -167159754 - L1ME LINE L1 -377 5744 5647 454 264 36 7 chr6 22119841 22119981 -167159573 - MIR SINE MIR -6 256 113 624 91 0 0 chr6 22120684 22120772 -167158782 + (TA)n Simple_repeat Simple_repeat 2 89 0 455 229 51 0 chr6 22120791 22120909 -167158645 + L2 LINE L2 3190 3313 0 241 57 57 43 chr6 22122668 22122738 -167156816 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 581 249 65 54 chr6 22123446 22123479 -167156075 + MIR SINE MIR 2 33 -229 2241 119 0 3 chr6 22123479 22123781 -167155773 + AluSx SINE Alu 1 301 -11 581 249 65 54 chr6 22123781 22123932 -167155622 + MIR SINE MIR 33 188 -74 2361 90 3 0 chr6 22124928 22125238 -167154316 + AluSq SINE Alu 1 311 -2 207 277 0 0 chr6 22125375 22125422 -167154132 + GA-rich Low_complexity Low_complexity 3 49 0 181 214 24 0 chr6 22126139 22126181 -167153373 + L2 LINE L2 3263 3305 -8 182 314 120 39 chr6 22127811 22128094 -167151460 - L2 LINE L2 -832 2482 2177 294 29 0 0 chr6 22128868 22128903 -167150651 + (TG)n Simple_repeat Simple_repeat 2 36 0 501 341 24 20 chr6 22128990 22129236 -167150318 + MIR SINE MIR 16 262 0 222 319 56 76 chr6 22129221 22129304 -167150250 - MIR SINE MIR -98 164 84 * 1894 96 4 11 chr6 22129304 22129565 -167149989 + AluSq SINE Alu 40 298 -15 222 319 56 76 chr6 22129565 22129625 -167149929 - MIR SINE MIR -178 84 24 2333 97 0 0 chr6 22130761 22131051 -167148503 + AluSq SINE Alu 1 290 -23 1166 129 36 0 chr6 22131519 22131713 -167147841 + L1MB3 LINE L1 5983 6183 0 1668 190 7 0 chr6 22131718 22132008 -167147546 - AluSx SINE Alu -20 292 1 30 0 0 0 chr6 22132008 22132038 -167147516 + AT_rich Low_complexity Low_complexity 1 30 0 2323 78 3 7 chr6 22132653 22132948 -167146606 + AluY SINE Alu 1 294 -17 320 304 9 9 chr6 22134151 22134266 -167145288 + MIR SINE MIR 129 243 -19 3436 136 23 11 chr6 22136260 22136781 -167142773 + MER1A DNA MER1_type 1 527 0 783 285 29 22 chr6 22137291 22137565 -167141989 + L1MC4a LINE L1 5597 5872 -1936 22 0 0 0 chr6 22138117 22138139 -167141415 + AT_rich Low_complexity Low_complexity 1 22 0 616 216 27 0 chr6 22138702 22138813 -167140741 - MER81 DNA DNA 0 114 1 234 0 0 0 chr6 22139227 22139253 -167140301 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2297 72 0 4 chr6 22139253 22139531 -167140023 - AluSg SINE Alu -33 277 1 3071 76 0 13 chr6 22140122 22140502 -167139052 + THE1C LTR MaLR 1 375 0 464 295 90 6 chr6 22140693 22140788 -167138766 + MER5A DNA MER1_type 15 129 -60 1711 169 8 0 chr6 22140788 22141055 -167138499 - AluJb SINE Alu -39 273 5 464 295 90 6 chr6 22141055 22141115 -167138439 + MER5A DNA MER1_type 129 183 -6 1385 213 115 18 chr6 22141355 22141755 -167137799 + L1M4 LINE L1 4862 5300 -846 984 272 98 39 chr6 22142697 22143135 -167136419 + LTR16B LTR ERVL 1 464 0 24 53 0 0 chr6 22143355 22143393 -167136161 + AT_rich Low_complexity Low_complexity 1 38 0 195 42 0 0 chr6 22143778 22143802 -167135752 + (T)n Simple_repeat Simple_repeat 1 24 0 719 239 150 45 chr6 22145820 22146133 -167133421 - L1ME4a LINE L1 -283 5838 5496 234 0 0 0 chr6 22146596 22146622 -167132932 + (CA)n Simple_repeat Simple_repeat 2 27 0 1808 169 52 92 chr6 22147636 22147999 -167131555 - MLT1C LTR MaLR -3 464 123 1616 141 85 7 chr6 22147999 22148282 -167131272 - AluSx SINE Alu -7 305 1 1808 169 52 92 chr6 22148282 22148396 -167131158 - MLT1C LTR MaLR -344 123 6 2246 127 3 3 chr6 22148425 22148733 -167130821 - AluJb SINE Alu -4 308 1 3094 147 55 6 chr6 22149220 22149711 -167129843 + MLT2B2 LTR ERVL 1 515 0 436 325 18 12 chr6 22149952 22150115 -167129439 - L2 LINE L2 -214 3058 2895 1774 151 6 80 chr6 22150228 22150565 -167128989 - AluJo SINE Alu 0 312 1 219 268 145 14 chr6 22150572 22150710 -167128844 - L2 LINE L2 -620 2694 2539 196 264 14 56 chr6 22151123 22151195 -167128359 - L2 LINE L2 -19 3294 3226 2150 122 7 0 chr6 22151330 22151624 -167127930 - AluSx SINE Alu -12 300 5 1657 104 97 15 chr6 22152391 22152650 -167126904 + L1PA13 LINE L1 5881 6160 -3 1109 205 29 9 chr6 22152688 22152898 -167126656 - MER58A DNA MER1_type 0 224 11 181 270 45 45 chr6 22153305 22153387 -167126167 + L2 LINE L2 2536 2617 -697 293 270 79 0 chr6 22153387 22153476 -167126078 - MER5B DNA MER1_type 0 178 83 332 260 130 18 chr6 22153614 22153783 -167125771 + L2 LINE L2 1972 2159 -1155 1580 175 80 30 chr6 22153963 22154301 -167125253 + MLT1A1 LTR MaLR 11 365 0 260 277 0 46 chr6 22154314 22154379 -167125175 + L2 LINE L2 3138 3199 -73 252 367 44 29 chr6 22154423 22154735 -167124819 + L2 LINE L2 2725 3038 -234 200 268 10 62 chr6 22154877 22154974 -167124580 + L2 LINE L2 3180 3271 -1 2769 90 31 8 chr6 22155770 22156126 -167123428 + THE1B LTR MaLR 1 364 0 359 247 184 32 chr6 22156153 22156236 -167123318 + L1ME3A LINE L1 5938 6007 -163 2244 101 7 0 chr6 22156236 22156532 -167123022 + AluSp SINE Alu 1 298 -15 359 247 184 32 chr6 22156532 22156606 -167122948 + L1ME3A LINE L1 6007 6119 -51 24 77 0 0 chr6 22156677 22156729 -167122825 + AT_rich Low_complexity Low_complexity 1 52 0 1846 169 10 3 chr6 22157016 22157306 -167122248 + AluSx SINE Alu 1 292 -20 220 267 205 31 chr6 22157415 22157576 -167121978 - MIR3 SINE MIR 0 208 20 2414 87 0 10 chr6 22157699 22158011 -167121543 + AluSc SINE Alu 1 309 0 562 231 8 8 chr6 22158823 22158940 -167120614 - L2 LINE L2 -2 3311 3195 319 257 155 34 chr6 22159113 22159143 -167120411 - L1MA10 LINE L1 0 6334 6305 441 257 134 53 chr6 22159143 22159427 -167120127 - L1ME1 LINE L1 -47 6119 5813 2076 108 3 63 chr6 22159428 22159760 -167119794 - AluSx SINE Alu 0 312 1 256 262 0 0 chr6 22159768 22159829 -167119725 - L1ME1 LINE L1 -398 5764 5704 2164 114 0 19 chr6 22160917 22161232 -167118322 + AluSx SINE Alu 1 309 -3 240 59 0 0 chr6 22161234 22161268 -167118286 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2395 43 0 7 chr6 22161687 22162012 -167117542 - AluY SINE Alu 0 323 1 2397 96 0 3 chr6 22163128 22163441 -167116113 + AluSx SINE Alu 1 312 0 953 203 0 36 chr6 22164018 22164210 -167115344 + MER5A DNA MER1_type 3 187 -2 296 304 0 0 chr6 22164357 22164449 -167115105 + MIR3 SINE MIR 112 203 -5 1134 215 35 101 chr6 22164470 22164865 -167114689 + MER93a LTR ERV1 7 374 -28 2526 50 0 10 chr6 22164865 22165167 -167114387 + AluY SINE Alu 1 299 -12 1134 215 35 101 chr6 22165167 22165195 -167114359 + MER93a LTR ERV1 374 402 0 554 196 0 75 chr6 22165468 22165601 -167113953 + L1M3 LINE L1 5430 5552 -631 * 1064 43 51 0 chr6 22165588 22165726 -167113828 - L1P LINE L1 -1761 4385 4241 970 64 0 0 chr6 22165718 22165843 -167113711 + L1P LINE L1 5109 5233 -913 * 1429 199 18 31 chr6 22165879 22166165 -167113389 + AluJo SINE Alu 1 282 -30 2154 127 0 0 chr6 22166759 22167059 -167112495 + AluSx SINE Alu 8 307 -5 3134 176 11 5 chr6 22167081 22168012 -167111542 + L1MA6 LINE L1 4769 5706 -585 1483 132 9 0 chr6 22168021 22168234 -167111320 + Charlie3 DNA MER1_type 1 215 -2495 1763 159 25 6 chr6 22168234 22168561 -167110993 + L1MA6 LINE L1 5719 6051 -249 771 95 35 9 chr6 22168561 22168674 -167110880 + L1MA7 LINE L1 6173 6291 0 798 154 60 0 chr6 22169326 22169475 -167110079 + L1 LINE L1 5151 5308 -838 3899 120 2 13 chr6 22169853 22170386 -167109168 + MER1A DNA MER1_type 1 527 0 499 310 75 5 chr6 22170412 22170625 -167108929 - MIR SINE MIR 0 262 35 2129 109 45 79 chr6 22170710 22171114 -167108440 - MLT1B LTR MaLR 0 390 1 276 221 0 159 chr6 22171411 22171524 -167108030 - MIR SINE MIR 0 262 168 608 293 52 9 chr6 22172273 22172485 -167107069 - MIR SINE MIR -8 254 34 448 244 16 31 chr6 22172517 22172644 -167106910 - MIR SINE MIR -63 145 21 347 232 58 7 chr6 22172913 22173053 -167106501 + (TA)n Simple_repeat Simple_repeat 1 151 -12 309 26 0 0 chr6 22173053 22173091 -167106463 + (CA)n Simple_repeat Simple_repeat 2 39 0 347 232 58 7 chr6 22173091 22173105 -167106449 + (TA)n Simple_repeat Simple_repeat 151 163 0 203 307 93 0 chr6 22173226 22173301 -167106253 + MIR SINE MIR 143 224 -38 302 241 15 144 chr6 22173381 22173576 -167105978 + MER5B DNA MER1_type 7 176 -2 2255 131 39 19 chr6 22173638 22173997 -167105557 + MER47A DNA MER2_type 1 366 0 297 286 0 24 chr6 22174041 22174125 -167105429 - MIR3 SINE MIR -34 174 93 2259 120 0 0 chr6 22174339 22174639 -167104915 + AluSx SINE Alu 1 300 -12 244 301 93 11 chr6 22174972 22175155 -167104399 - L1MC4a LINE L1 -1818 5990 5793 1754 165 26 23 chr6 22175543 22175852 -167103702 + AluJo SINE Alu 2 311 -1 207 0 0 0 chr6 22175862 22175885 -167103669 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 698 289 134 21 chr6 22176028 22176401 -167103153 - L1MC4a LINE L1 -2019 5789 5375 598 306 112 9 chr6 22176523 22176755 -167102799 + MIR SINE MIR 7 262 0 968 141 0 0 chr6 22177195 22177337 -167102217 + AluSg/x SINE Alu 133 274 -36 318 26 0 0 chr6 22177342 22177381 -167102173 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 702 203 0 16 chr6 22177381 22177563 -167101991 + GA-rich Low_complexity Low_complexity 2 180 0 581 231 13 0 chr6 22177573 22177729 -167101825 + G-rich Low_complexity Low_complexity 4 161 0 189 147 0 0 chr6 22178486 22178520 -167101034 + (A)n Simple_repeat Simple_repeat 1 34 0 715 286 113 59 chr6 22178773 22179536 -167100018 + L2 LINE L2 1859 2662 -652 451 261 124 89 chr6 22179511 22179768 -167099786 + L2 LINE L2 2985 3250 -22 * 351 0 0 0 chr6 22179771 22179810 -167099744 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1814 119 31 55 chr6 22180133 22180454 -167099100 + AluJo SINE Alu 1 314 0 1915 164 3 0 chr6 22180630 22180979 -167098575 + AluJo SINE Alu 1 350 0 1820 139 15 0 chr6 22181033 22181300 -167098254 + AluSg SINE Alu 3 273 -37 219 36 0 0 chr6 22181304 22181332 -167098222 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2931 120 31 2 chr6 22181717 22182133 -167097421 + MSTA LTR MaLR 1 428 0 2155 128 3 0 chr6 22182547 22182853 -167096701 + AluSx SINE Alu 1 307 -5 288 306 71 20 chr6 22183007 22183105 -167096449 + L2 LINE L2 3139 3241 -31 2810 184 97 14 chr6 22183107 22183663 -167095891 - MER7C DNA MER2_type 0 602 1 25 31 0 0 chr6 22184026 22184058 -167095496 + AT_rich Low_complexity Low_complexity 1 32 0 1567 174 0 66 chr6 22184133 22184316 -167095238 - AluJo SINE Alu -16 296 102 210 37 0 0 chr6 22184316 22184343 -167095211 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1867 121 0 81 chr6 22184343 22184650 -167094904 - AluSx SINE Alu -30 282 1 1567 174 0 66 chr6 22184650 22184782 -167094772 - AluJo SINE Alu -208 104 1 1770 188 0 0 chr6 22184884 22185176 -167094378 + AluJo SINE Alu 5 296 -16 212 356 55 0 chr6 22185275 22185348 -167094206 + MIR SINE MIR 1 77 -185 2181 108 7 7 chr6 22185507 22185802 -167093752 - AluSx SINE Alu -17 295 1 827 171 0 0 chr6 22186241 22186370 -167093184 - FLAM_C SINE Alu -12 131 3 2338 67 0 3 chr6 22186392 22186677 -167092877 + AluY SINE Alu 23 306 -5 23 0 0 0 chr6 22187505 22187528 -167092026 + AT_rich Low_complexity Low_complexity 1 23 0 1425 62 28 6 chr6 22187811 22187988 -167091566 - L1PA11 LINE L1 0 6174 5994 192 274 0 0 chr6 22188004 22188055 -167091499 - MIR SINE MIR -44 218 168 4612 86 8 18 chr6 22188200 22188828 -167090726 - L1PA11 LINE L1 -187 5987 5366 1139 157 58 4 chr6 22191007 22191321 -167088233 - MLT1A1 LTR MaLR 0 365 1 2905 88 3 0 chr6 22192638 22192992 -167086562 - THE1A LTR MaLR 0 355 1 288 0 0 0 chr6 22193759 22193791 -167085763 + (TG)n Simple_repeat Simple_repeat 2 33 0 1625 160 18 32 chr6 22193848 22194130 -167085424 + AluJo SINE Alu 1 278 -34 180 0 0 0 chr6 22194131 22194151 -167085403 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 1803 178 82 21 chr6 22194157 22194545 -167085009 + MLT2D LTR ERVL 1 412 -2 478 278 42 14 chr6 22194611 22194755 -167084799 - MIR SINE MIR -47 215 68 1626 165 8 4 chr6 22194791 22195051 -167084503 + AluJo SINE Alu 14 274 -38 192 77 0 0 chr6 22195054 22195080 -167084474 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 220 293 120 0 chr6 22196128 22196203 -167083351 + MIR SINE MIR 66 149 -59 1869 147 25 0 chr6 22196598 22196884 -167082670 + AluJb SINE Alu 11 303 -9 4488 91 16 4 chr6 22197277 22197839 -167081715 - MER61E LTR ERV1 0 569 1 2993 132 29 25 chr6 22198162 22198276 -167081278 - L1MA8 LINE L1 -56 6235 6123 1245 157 0 0 chr6 22198276 22198442 -167081112 - FAM SINE Alu -8 167 2 2993 132 29 25 chr6 22198442 22198848 -167080706 - L1MA8 LINE L1 -168 6123 5713 2221 105 6 16 chr6 22198858 22199171 -167080383 - AluSg SINE Alu 0 310 1 482 271 150 19 chr6 22199720 22199927 -167079627 - L3 LINE CR1 -108 1469 1236 1040 246 66 22 chr6 22199927 22200270 -167079284 + MSTD LTR MaLR 1 396 0 482 274 16 59 chr6 22200287 22200473 -167079081 - L3 LINE CR1 -358 1219 1042 477 295 38 1 chr6 22201588 22201757 -167077797 - MIR SINE MIR -63 145 20 2716 26 0 3 chr6 22201874 22202184 -167077370 - AluY SINE Alu -2 309 1 2415 90 0 0 chr6 22202483 22202783 -167076771 - AluSc SINE Alu -9 300 1 22 0 0 0 chr6 22202841 22202863 -167076691 + AT_rich Low_complexity Low_complexity 1 22 0 3798 161 106 126 chr6 22203019 22203551 -167076003 - L1MC3 LINE L1 0 7785 7244 318 266 18 33 chr6 22203551 22203685 -167075869 - MLT1F1 LTR MaLR -406 143 45 3798 161 106 126 chr6 22203685 22203837 -167075717 - L1MC3 LINE L1 -541 7244 7090 1785 173 0 3 chr6 22203837 22204126 -167075428 - AluJb SINE Alu -19 293 6 3798 161 106 126 chr6 22204126 22204484 -167075070 - L1MC3 LINE L1 -695 7090 6634 282 56 0 0 chr6 22204484 22204520 -167075034 + (TG)n Simple_repeat Simple_repeat 1 36 0 3798 161 106 126 chr6 22204520 22204609 -167074945 - L1MC3 LINE L1 -1151 6634 6545 378 338 56 5 chr6 22204990 22205206 -167074348 + L1MEd LINE L1 497 723 -5396 * 891 163 48 122 chr6 22205203 22205459 -167074095 + L1MB8 LINE L1 5874 6107 -71 2326 103 0 3 chr6 22205459 22205771 -167073783 + AluSq SINE Alu 3 313 0 891 163 48 122 chr6 22205771 22205808 -167073746 + L1MB8 LINE L1 6107 6145 -33 898 209 44 0 chr6 22205816 22205998 -167073556 + L1MD3 LINE L1 7757 7946 -49 749 157 0 25 chr6 22205999 22206120 -167073434 - FLAM_A SINE Alu -15 127 10 4248 90 11 45 chr6 22206121 22206741 -167072813 + MER4A LTR ERV1 2 600 0 281 95 0 32 chr6 22206753 22206816 -167072738 + L1MD3 LINE L1 7935 7995 0 2272 115 3 6 chr6 22206823 22207136 -167072418 + AluSx SINE Alu 1 312 0 2337 166 20 5 chr6 22207744 22208141 -167071413 + MER57A LTR ERV1 1 403 0 2304 105 0 0 chr6 22208566 22208860 -167070694 + AluSg SINE Alu 1 294 -16 2556 148 32 17 chr6 22209683 22210088 -167069466 + LTR57 LTR ERVL 1 411 0 198 167 0 0 chr6 22210210 22210246 -167069308 + GA-rich Low_complexity Low_complexity 3 38 0 2247 107 0 3 chr6 22210462 22210760 -167068794 - AluSx SINE Alu -15 297 1 35 78 0 0 chr6 22210787 22210864 -167068690 + AT_rich Low_complexity Low_complexity 1 77 0 22 80 0 0 chr6 22211079 22211129 -167068425 + AT_rich Low_complexity Low_complexity 1 50 0 1003 111 0 15 chr6 22211900 22212035 -167067519 + FLAM_C SINE Alu 1 133 0 1675 176 181 2 chr6 22212543 22212964 -167066590 + LTR54B LTR ERV1 1 496 -2 200 293 126 52 chr6 22213464 22213655 -167065899 - L2 LINE L2 -221 3051 2847 280 315 108 0 chr6 22213660 22213790 -167065764 + MIR SINE MIR 3 146 -116 1788 191 0 7 chr6 22213793 22214096 -167065458 + AluJo SINE Alu 1 301 -11 225 192 19 19 chr6 22214096 22214148 -167065406 + GA-rich Low_complexity Low_complexity 1 52 0 2353 106 0 0 chr6 22215050 22215352 -167064202 - AluSx SINE Alu -10 302 1 209 274 232 0 chr6 22216220 22216315 -167063239 - MER5A DNA MER1_type -1 188 72 795 190 37 0 chr6 22216379 22216542 -167063012 + MER58 DNA MER1_type 28 196 -145 280 283 58 17 chr6 22216779 22216899 -167062655 + L2 LINE L2 3179 3303 -10 2398 78 0 0 chr6 22217044 22217339 -167062215 + AluSg SINE Alu 1 295 -15 365 289 56 0 chr6 22218845 22218987 -167060567 + LTR33 LTR ERVL 364 513 -8 357 210 51 58 chr6 22219035 22219173 -167060381 - MIR SINE MIR -88 174 38 267 31 0 0 chr6 22219454 22219486 -167060068 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 315 0 0 0 chr6 22220848 22220883 -167058671 + (CA)n Simple_repeat Simple_repeat 2 36 0 226 234 0 16 chr6 22222530 22222594 -167056960 + (CA)n Simple_repeat Simple_repeat 1 63 0 257 200 22 33 chr6 22222916 22223096 -167056458 + (TA)n Simple_repeat Simple_repeat 1 178 0 2279 99 10 0 chr6 22223185 22223487 -167056067 + AluSx SINE Alu 1 305 -7 191 336 64 0 chr6 22223783 22223893 -167055661 - MIR SINE MIR -50 212 96 405 244 0 22 chr6 22225374 22225464 -167054090 + AluS SINE Alu 4 91 -221 348 309 8 8 chr6 22225465 22225588 -167053966 + MIR SINE MIR 34 156 -106 2363 86 17 0 chr6 22225868 22226169 -167053385 + AluSp SINE Alu 1 306 -7 1195 289 42 27 chr6 22227396 22228162 -167051392 - L2 LINE L2 -7 3306 2534 912 169 28 89 chr6 22228179 22228223 -167051331 - MLT1A1 LTR MaLR 0 365 320 2240 105 7 0 chr6 22228223 22228518 -167051036 + AluSx SINE Alu 1 297 -15 912 169 28 89 chr6 22228518 22228686 -167050868 - MLT1A1 LTR MaLR -45 320 166 1102 114 0 72 chr6 22228699 22228892 -167050662 - AluSg/x SINE Alu 0 310 132 2467 91 3 0 chr6 22228892 22229201 -167050353 - AluSp SINE Alu -3 310 1 864 168 27 0 chr6 22229204 22229353 -167050201 - MLT1A1 LTR MaLR -212 153 1 1531 206 59 78 chr6 22230396 22230800 -167048754 + MER39 LTR ERV1 167 707 0 26 74 0 0 chr6 22231000 22231054 -167048500 + AT_rich Low_complexity Low_complexity 1 54 0 2127 120 7 3 chr6 22231054 22231355 -167048199 - AluSx SINE Alu -10 302 1 302 134 15 0 chr6 22231360 22231427 -167048127 + (TA)n Simple_repeat Simple_repeat 1 68 0 1102 135 0 45 chr6 22231454 22231632 -167047922 + FRAM SINE Alu 1 166 -10 2122 238 104 33 chr6 22231740 22232690 -167046864 + Charlie2a DNA MER1_type 38 1074 -1788 229 198 91 83 chr6 22232699 22232820 -167046734 + Charlie2a DNA MER1_type 978 1099 -1763 * 1919 196 51 52 chr6 22232798 22233276 -167046278 + Charlie2a DNA MER1_type 2215 2693 -169 1627 157 39 18 chr6 22233276 22233562 -167045992 - AluJo SINE Alu -20 292 1 1919 196 51 52 chr6 22233562 22233732 -167045822 + Charlie2a DNA MER1_type 2693 2862 0 480 264 13 13 chr6 22233928 22234083 -167045471 - L1ME3A LINE L1 -289 5881 5727 1001 163 73 0 chr6 22234093 22234271 -167045283 - AluJo SINE Alu -1 311 121 999 275 76 18 chr6 22234271 22234664 -167044890 - L1ME3A LINE L1 -451 5711 5296 365 206 0 0 chr6 22234669 22234742 -167044812 - L1MA9 LINE L1 0 6312 6240 2606 176 13 74 chr6 22234762 22235314 -167044240 + MLT2B1 LTR ERVL 3 520 0 1742 183 0 26 chr6 22235327 22235638 -167043916 - AluJo SINE Alu -9 303 1 951 297 58 27 chr6 22235646 22236317 -167043237 - L1ME3A LINE L1 -1112 5034 4343 1836 166 3 16 chr6 22236324 22236637 -167042917 - AluJo SINE Alu -3 309 1 2328 69 10 16 chr6 22236899 22237204 -167042350 + AluY SINE Alu 2 304 -7 2378 87 3 0 chr6 22237259 22237557 -167041997 - AluSp SINE Alu -14 299 1 197 330 139 0 chr6 22237632 22237747 -167041807 - L2 LINE L2 -1 3271 3141 513 122 0 14 chr6 22237906 22238011 -167041543 + AluSg/x SINE Alu 210 313 0 413 353 66 25 chr6 22238011 22238328 -167041226 - L3 LINE CR1 -223 1354 1025 183 354 0 0 chr6 22238389 22238468 -167041086 + L3 LINE CR1 1303 1381 -196 1021 269 69 94 chr6 22238568 22239088 -167040466 - MLT1K LTR MaLR -15 573 67 263 289 74 47 chr6 22239210 22239359 -167040195 + MIR3 SINE MIR 54 206 -2 218 294 56 67 chr6 22239798 22239948 -167039606 + MIR SINE MIR 3 149 -65 232 351 37 0 chr6 22240019 22240153 -167039401 + L3 LINE CR1 626 764 -813 371 256 64 40 chr6 22240415 22240540 -167039014 + MER91B DNA MER1_type 1 128 -62 299 226 65 54 chr6 22240560 22240653 -167038901 + MER91B DNA MER1_type 95 188 -2 1466 159 29 108 chr6 22240721 22240893 -167038661 + AluJo SINE Alu 1 138 -174 658 29 48 0 chr6 22240893 22240998 -167038556 + (TA)n Simple_repeat Simple_repeat 2 111 0 1466 159 29 108 chr6 22240998 22241140 -167038414 + AluJo SINE Alu 138 290 -22 24 0 0 0 chr6 22241144 22241168 -167038386 + AT_rich Low_complexity Low_complexity 1 24 0 337 333 101 6 chr6 22241170 22241329 -167038225 + L3 LINE CR1 1368 1541 -36 242 286 137 30 chr6 22241343 22241511 -167038043 - MIR SINE MIR -10 252 67 405 123 0 15 chr6 22241529 22241594 -167037960 - MLT1D LTR MaLR -2 503 440 2134 108 0 0 chr6 22241598 22241875 -167037679 + AluSx SINE Alu 4 280 -32 183 42 0 0 chr6 22241878 22241902 -167037652 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7881 133 69 43 chr6 22241914 22243430 -167036124 + pTR5 LTR ERV1 741 2295 -143 1316 241 65 34 chr6 22243442 22243857 -167035697 - MLT1D LTR MaLR -76 429 2 2326 100 0 28 chr6 22244626 22244947 -167034607 + AluSx SINE Alu 1 312 0 289 215 0 131 chr6 22245099 22245229 -167034325 + MER5A DNA MER1_type 33 145 -44 430 261 0 9 chr6 22246292 22246403 -167033151 + MER5B DNA MER1_type 6 115 -63 448 278 35 0 chr6 22246405 22246574 -167032980 + L1MD2 LINE L1 4623 4797 -1349 3167 158 115 13 chr6 22246574 22247183 -167032371 + LTR51 LTR ERV1 1 671 0 1267 200 82 65 chr6 22247198 22247763 -167031791 - LTR1B LTR ERV1 0 1020 308 4045 134 67 62 chr6 22247766 22248971 -167030583 + pTR5 LTR ERV1 749 2295 -143 692 246 89 0 chr6 22249032 22249235 -167030319 - LTR1B LTR ERV1 -605 221 1 595 215 49 85 chr6 22249245 22249320 -167030234 + L1MD2 LINE L1 4792 4868 -1278 1227 96 21 11 chr6 22249320 22249507 -167030047 - L1MA5 LINE L1 -4 6296 6108 595 215 49 85 chr6 22249507 22249677 -167029877 + L1MD2 LINE L1 4868 5028 -1118 2256 109 3 10 chr6 22249704 22250008 -167029546 + AluSp SINE Alu 1 302 -11 563 108 0 65 chr6 22250082 22250217 -167029337 + AluSp/q SINE Alu 215 313 0 2805 233 45 33 chr6 22250250 22250429 -167029125 - MER21B LTR ERV1 -52 811 636 1520 197 139 47 chr6 22250429 22250896 -167028658 - LTR54 LTR ERV1 0 510 1 2805 233 45 33 chr6 22250896 22251421 -167028133 - MER21B LTR ERV1 -227 636 98 375 211 11 63 chr6 22251550 22251645 -167027909 - MER21B LTR ERV1 -773 90 1 1239 203 12 30 chr6 22251647 22251810 -167027744 + L1MD2 LINE L1 5074 5238 -1004 1624 168 0 38 chr6 22251810 22252101 -167027453 + AluJb SINE Alu 20 299 -13 1239 203 12 30 chr6 22252101 22252385 -167027169 + L1MD2 LINE L1 5238 5508 -734 775 179 85 113 chr6 22252385 22252681 -167026873 - LTR8A LTR ERV1 0 727 439 3511 156 34 128 chr6 22252681 22253588 -167025966 - LTR12 LTR ERV1 0 826 5 775 179 85 113 chr6 22253588 22253620 -167025934 - LTR8A LTR ERV1 -288 439 408 2779 169 17 27 chr6 22253620 22254213 -167025341 - pTR5 LTR ERV1 -1110 1328 742 454 223 121 40 chr6 22254221 22254453 -167025101 - LTR8A LTR ERV1 -266 461 84 793 254 66 31 chr6 22254521 22254777 -167024777 - LTR8 LTR ERV1 -425 266 2 659 233 98 123 chr6 22254804 22255374 -167024180 - MER34B LTR ERV1 -4 561 6 2562 191 17 101 chr6 22255381 22255954 -167023600 + L1MD2 LINE L1 5526 6029 -213 255 61 0 0 chr6 22255954 22255987 -167023567 + (CA)n Simple_repeat Simple_repeat 1 33 0 2562 191 17 101 chr6 22255987 22256125 -167023429 + L1MD2 LINE L1 6029 6177 -65 2310 47 29 4 chr6 22256125 22256399 -167023155 + AluY SINE Alu 15 295 -16 957 163 0 7 chr6 22256400 22256547 -167023007 + AluSg/x SINE Alu 134 279 -33 427 298 8 8 chr6 22256585 22256706 -167022848 + MER5B DNA MER1_type 50 170 -8 2281 117 0 0 chr6 22256802 22257110 -167022444 + AluSx SINE Alu 1 308 -4 2148 105 7 3 chr6 22257181 22257475 -167022079 + AluSq SINE Alu 1 295 -18 1400 206 110 39 chr6 22257694 22257864 -167021690 - Zaphod DNA AcHobo 0 4031 3875 2100 136 0 3 chr6 22257864 22258166 -167021388 - AluSx SINE Alu -11 301 1 1400 206 110 39 chr6 22258166 22258403 -167021151 - Zaphod DNA AcHobo -156 3875 3595 686 184 52 55 chr6 22258375 22258718 -167020836 - Zaphod DNA AcHobo -3020 1011 670 * 2014 192 44 3 chr6 22258718 22259104 -167020450 + Tigger7 DNA MER2_type 1 402 -2085 231 216 0 20 chr6 22259205 22259256 -167020298 - LTR28 LTR ERV1 -56 964 915 1810 199 129 58 chr6 22259265 22259839 -167019715 - LTR1B LTR ERV1 -211 615 1 509 154 13 0 chr6 22259867 22259945 -167019609 + Tigger7 DNA MER2_type 2409 2487 0 1602 257 120 46 chr6 22259945 22259999 -167019555 - Zaphod DNA AcHobo -3360 671 622 244 48 48 0 chr6 22259999 22260041 -167019513 + (TA)n Simple_repeat Simple_repeat 1 44 0 1602 257 120 46 chr6 22260041 22260596 -167018958 - Zaphod DNA AcHobo -3409 622 17 363 313 60 30 chr6 22260667 22260900 -167018654 + MARNA DNA Mariner 272 511 -75 2266 104 10 7 chr6 22261077 22261385 -167018169 - AluSx SINE Alu -3 309 1 1825 169 0 3 chr6 22261623 22261919 -167017635 + AluJo SINE Alu 1 295 -17 431 218 11 0 chr6 22262809 22262896 -167016658 - L1MC5 LINE L1 -1221 6740 6653 * 749 310 38 34 chr6 22262894 22263397 -167016157 - HAL1b LINE L1 -755 593 89 1250 311 9 12 chr6 22264077 22264411 -167015143 - HERV16 LTR ERVL -1963 3033 2701 22 56 0 0 chr6 22264426 22264462 -167015092 + AT_rich Low_complexity Low_complexity 1 36 0 2257 111 3 10 chr6 22264655 22264962 -167014592 - AluSx SINE Alu -5 307 3 2231 99 7 0 chr6 22265222 22265516 -167014038 + AluSx SINE Alu 1 296 -16 997 197 89 15 chr6 22266106 22266340 -167013214 + MLT2B1 LTR ERVL 222 520 0 1166 187 83 56 chr6 22266350 22266520 -167013034 - Charlie5 DNA MER1_type -2143 481 317 2260 112 10 0 chr6 22266520 22266823 -167012731 + AluSx SINE Alu 1 306 -6 1166 187 83 56 chr6 22266823 22266989 -167012565 - Charlie5 DNA MER1_type -2307 317 136 830 171 8 0 chr6 22266991 22267120 -167012434 + AluSq/x SINE Alu 2 131 -182 379 259 0 0 chr6 22267159 22267244 -167012310 - Charlie5 DNA MER1_type -2518 94 10 400 288 122 18 chr6 22267554 22267776 -167011778 + MIR SINE MIR 1 245 -17 2011 119 34 3 chr6 22267812 22268107 -167011447 + AluSx SINE Alu 4 307 -5 3691 124 208 82 chr6 22268267 22269638 -167009916 + pTR5 LTR ERV1 742 2438 0 6191 154 34 19 chr6 22271189 22271674 -167007880 + L1MA7 LINE L1 4157 4633 -1658 351 0 0 0 chr6 22271674 22271713 -167007841 + (CA)n Simple_repeat Simple_repeat 1 39 0 6191 154 34 19 chr6 22271713 22271752 -167007802 + L1MA7 LINE L1 4633 4670 -1621 1732 194 3 32 chr6 22271752 22272067 -167007487 + AluJo SINE Alu 1 306 -6 6191 154 34 19 chr6 22272067 22272362 -167007192 + L1MA7 LINE L1 4670 4959 -1332 760 169 39 15 chr6 22272362 22272492 -167007062 + FLAM_C SINE Alu 1 133 0 6191 154 34 19 chr6 22272492 22273779 -167005775 + L1MA7 LINE L1 4959 6291 0 786 218 0 0 chr6 22273920 22274053 -167005501 - FLAM_A SINE Alu 0 133 1 24 0 0 0 chr6 22274112 22274136 -167005418 + AT_rich Low_complexity Low_complexity 1 24 0 1537 149 22 99 chr6 22274170 22274492 -167005062 - AluJo SINE Alu -15 297 1 402 298 5 105 chr6 22274887 22275078 -167004476 + MIR3 SINE MIR 20 191 -17 2327 116 7 0 chr6 22275167 22275477 -167004077 - AluSx SINE Alu 0 312 1 1512 265 78 75 chr6 22276731 22277257 -167002297 + MER115 DNA AcHobo 19 549 -144 2342 106 0 3 chr6 22277257 22277568 -167001986 + AluSq SINE Alu 1 310 -3 1512 265 78 75 chr6 22277568 22277710 -167001844 + MER115 DNA AcHobo 549 689 -4 2346 89 0 0 chr6 22278889 22279181 -167000373 + AluSg SINE Alu 1 292 -18 1346 46 0 0 chr6 22280041 22280194 -166999360 - AluY SINE Alu -8 303 151 255 273 0 0 chr6 22280502 22280557 -166998997 - L2 LINE L2 -82 3190 3136 228 296 138 73 chr6 22280652 22280912 -166998642 - L2 LINE L2 -189 3083 2807 316 339 104 9 chr6 22280966 22281081 -166998473 + L2 LINE L2 3147 3272 0 4239 142 13 2 chr6 22281271 22281897 -166997657 - MER41B LTR ERV1 0 635 3 2423 94 0 0 chr6 22281904 22282213 -166997341 - AluSc SINE Alu 0 309 1 232 237 62 52 chr6 22282369 22282466 -166997088 + MER103 DNA DNA 43 140 -26 2163 125 3 3 chr6 22282466 22282778 -166996776 + AluSx SINE Alu 1 312 0 496 304 90 83 chr6 22283020 22283477 -166996077 + L2 LINE L2 2811 3270 -2 2486 66 0 10 chr6 22283529 22283831 -166995723 + AluY SINE Alu 1 299 -12 208 239 22 0 chr6 22284487 22284533 -166995021 + L2 LINE L2 3218 3264 -8 4891 106 0 2 chr6 22284588 22285232 -166994322 - L1PA13 LINE L1 -4 6159 5517 441 313 114 11 chr6 22285781 22285957 -166993597 - MIR SINE MIR -32 230 37 2108 123 3 0 chr6 22285987 22286280 -166993274 - AluSx SINE Alu -18 294 1 359 270 76 133 chr6 22286461 22286850 -166992704 + MLT1K LTR MaLR 149 510 -78 2178 84 28 3 chr6 22286850 22287137 -166992417 - AluSg1 SINE Alu -15 294 1 359 270 76 133 chr6 22287137 22287207 -166992347 + MLT1K LTR MaLR 510 582 -6 633 121 0 10 chr6 22287470 22287569 -166991985 + MER4A LTR ERV1 1 98 -566 1913 128 9 25 chr6 22287569 22287920 -166991634 + MER4A LTR ERV1 261 664 0 833 204 0 0 chr6 22288870 22289043 -166990511 - FLAM_A SINE Alu 0 173 1 1153 261 59 36 chr6 22289165 22289609 -166989945 - L2 LINE L2 0 3313 2860 1714 257 40 71 chr6 22289609 22290445 -166989109 + L1MEd LINE L1 304 1113 -5006 1445 256 15 15 chr6 22290434 22290894 -166988660 + L1MEd LINE L1 3018 3477 -2652 * 517 111 0 0 chr6 22290907 22290979 -166988575 + U3 snRNA snRNA 1 72 -145 11231 180 17 14 chr6 22290980 22294094 -166985460 + L1PA16 LINE L1 3041 6160 -6 7602 197 37 26 chr6 22294074 22296379 -166983175 + L1MB8 LINE L1 3452 5791 -376 * 1848 160 0 39 chr6 22296379 22296506 -166983048 + AluJo SINE Alu 1 131 -181 2494 62 0 10 chr6 22296506 22296810 -166982744 - AluSp SINE Alu -12 301 1 1848 160 0 39 chr6 22296810 22296994 -166982560 + AluJo SINE Alu 131 300 -12 7602 197 37 26 chr6 22296994 22297200 -166982354 + L1MB8 LINE L1 5791 5993 -174 1816 195 84 7 chr6 22297202 22297429 -166982125 - MLT1C LTR MaLR -3 464 256 2327 122 0 0 chr6 22297429 22297740 -166981814 - AluSp SINE Alu -2 311 1 1816 195 84 7 chr6 22297740 22297938 -166981616 - MLT1C LTR MaLR -211 256 6 990 141 12 12 chr6 22297943 22298113 -166981441 + L1MB8 LINE L1 5990 6159 -2 1649 140 41 51 chr6 22298788 22299080 -166980474 - AluJb SINE Alu -23 289 1 246 270 43 17 chr6 22299085 22299200 -166980354 + L1MEc LINE L1 2256 2373 -4023 1168 188 134 3 chr6 22299222 22299514 -166980040 - MER46C DNA MER2_type -8 330 1 243 311 71 36 chr6 22299515 22299711 -166979843 + L1MEc LINE L1 2366 2568 -3647 317 253 72 24 chr6 22299965 22300048 -166979506 - MIR SINE MIR -148 114 28 766 216 50 66 chr6 22301390 22301573 -166977981 + MIR SINE MIR 21 201 -61 3521 146 9 13 chr6 22301573 22302102 -166977452 - MER1A DNA MER1_type 0 527 1 766 216 50 66 chr6 22302102 22302159 -166977395 + MIR SINE MIR 201 257 -5 934 279 36 69 chr6 22302165 22302515 -166977039 - L2 LINE L2 -1 3312 2979 2331 88 7 0 chr6 22302515 22302812 -166976742 - AluSp SINE Alu -14 299 1 934 279 36 69 chr6 22302812 22302927 -166976627 - L2 LINE L2 -334 2979 2862 2809 207 36 52 chr6 22303757 22304443 -166975111 - L1ME1 LINE L1 -18 6148 5474 26 64 0 0 chr6 22304485 22304532 -166975022 + AT_rich Low_complexity Low_complexity 1 47 0 280 209 22 11 chr6 22304543 22304634 -166974920 - Charlie5 DNA MER1_type -84 2528 2437 7513 145 19 35 chr6 22304634 22306151 -166973403 - L1MA4 LINE L1 -10 6290 4824 2158 122 0 10 chr6 22306151 22306454 -166973100 - AluSq SINE Alu -3 310 11 7513 145 19 35 chr6 22306454 22307344 -166972210 - L1MA4 LINE L1 -1476 4824 3921 885 167 48 0 chr6 22307343 22307580 -166971974 - L1ME1 LINE L1 -745 5401 5192 * 1139 204 232 20 chr6 22307576 22307929 -166971625 - L1ME1 LINE L1 -19 6147 5720 37 0 0 21 chr6 22308251 22308268 -166971286 + AT_rich Low_complexity Low_complexity 1 17 -30 2470 49 0 0 chr6 22308268 22308556 -166970998 + AluY SINE Alu 1 288 -23 37 0 0 21 chr6 22308556 22308586 -166970968 + AT_rich Low_complexity Low_complexity 17 47 0 1954 86 0 32 chr6 22308899 22309178 -166970376 + AluY SINE Alu 37 306 -5 2025 106 7 46 chr6 22309189 22309492 -166970062 + AluSx SINE Alu 2 292 -20 340 271 15 68 chr6 22309643 22309776 -166969778 + MER5A DNA MER1_type 7 132 -57 6217 131 153 81 chr6 22309954 22311407 -166968147 + pTR5 LTR ERV1 738 2295 -143 1639 148 7 21 chr6 22313099 22313383 -166966171 + L1MB7 LINE L1 5905 6184 0 828 288 93 27 chr6 22313390 22313898 -166965656 + L1ME LINE L1 5267 5817 -345 1720 164 7 33 chr6 22314385 22314690 -166964864 - AluJo SINE Alu -15 297 1 987 219 9 19 chr6 22314739 22314949 -166964605 + MER3 DNA MER1_type 2 209 0 2224 106 26 7 chr6 22315066 22315369 -166964185 - AluSx SINE Alu -3 309 1 201 340 57 0 chr6 22315751 22315868 -166963686 - L2 LINE L2 -464 2850 2724 2941 163 42 11 chr6 22315906 22316132 -166963422 + L1MB3 LINE L1 5609 5827 -356 1990 103 88 0 chr6 22316132 22316404 -166963150 + AluSp SINE Alu 1 296 -17 2941 163 42 11 chr6 22316404 22316731 -166962823 + L1MB3 LINE L1 5827 6179 -4 1210 273 147 10 chr6 22316745 22316771 -166962783 + L2 LINE L2 2565 2586 -727 2465 89 0 6 chr6 22316771 22317085 -166962469 - AluSq SINE Alu -1 312 1 1210 273 147 10 chr6 22317085 22317507 -166962047 + L2 LINE L2 2586 2949 -364 823 19 19 28 chr6 22317507 22317635 -166961919 + L1PA3 LINE L1 6048 6155 0 1210 273 147 10 chr6 22317635 22317837 -166961717 + L2 LINE L2 2949 3313 0 462 232 151 27 chr6 22318005 22318190 -166961364 - L2 LINE L2 -887 2427 2220 44 46 0 0 chr6 22318406 22318471 -166961083 + AT_rich Low_complexity Low_complexity 1 65 0 244 254 0 0 chr6 22318595 22318658 -166960896 - MIR3 SINE MIR -41 167 105 2147 117 3 47 chr6 22318773 22318994 -166960560 + L1PB4 LINE L1 5585 5785 -371 297 0 0 0 chr6 22318994 22319027 -166960527 + (CA)n Simple_repeat Simple_repeat 1 33 0 2147 117 3 47 chr6 22319027 22319165 -166960389 + L1PB4 LINE L1 5785 5928 -228 * 2242 110 27 9 chr6 22319152 22319489 -166960065 + L1PA16 LINE L1 5686 6028 -138 24 67 0 0 chr6 22319497 22319542 -166960012 + AT_rich Low_complexity Low_complexity 1 45 0 429 158 89 0 chr6 22319550 22319651 -166959903 + L1MDa LINE L1 1631 1740 -4800 1397 165 28 0 chr6 22319728 22319976 -166959578 + L1PB4 LINE L1 5892 6146 -10 273 307 156 34 chr6 22320554 22320733 -166958821 + MLT1J LTR MaLR 115 315 -196 274 218 126 0 chr6 22320785 22320872 -166958682 + MLT1L LTR MaLR 501 598 -17 1671 155 15 0 chr6 22321051 22321315 -166958239 - AluJb SINE Alu -44 268 1 920 193 19 0 chr6 22324443 22324604 -166954950 + FAM SINE Alu 1 164 -11 389 276 52 22 chr6 22324642 22324776 -166954778 + MIR SINE MIR 12 149 -113 2068 93 90 0 chr6 22324781 22325060 -166954494 - AluSg SINE Alu -6 304 1 275 260 144 0 chr6 22325109 22325213 -166954341 + MIR SINE MIR 4 122 -140 742 218 0 0 chr6 22325299 22325423 -166954131 - FLAM_A SINE Alu -9 124 1 1268 197 0 0 chr6 22325428 22325636 -166953918 - MER58A DNA MER1_type -16 208 1 210 158 0 0 chr6 22325870 22325908 -166953646 + A-rich Low_complexity Low_complexity 1 38 0 462 246 36 98 chr6 22326431 22326655 -166952899 + MLT1J LTR MaLR 299 508 -3 808 266 112 16 chr6 22326665 22326707 -166952847 - HsTC2c DNA Tc2 -1170 728 691 1792 52 4 0 chr6 22326707 22326937 -166952617 - L1PA4 LINE L1 -3 6152 5922 808 266 112 16 chr6 22326937 22327206 -166952348 - HsTC2c DNA Tc2 -1207 691 387 340 231 0 15 chr6 22327218 22327283 -166952271 + MER91A DNA MER1_type 28 91 -105 4406 158 72 39 chr6 22327600 22328911 -166950643 + pTR5 LTR ERV1 734 2438 0 5405 171 239 33 chr6 22328921 22330327 -166949227 + pTR5 LTR ERV1 743 2438 0 1824 161 3 7 chr6 22330456 22330754 -166948800 + AluSx SINE Alu 1 297 -15 1648 125 4 36 chr6 22331386 22331634 -166947920 + AluSc SINE Alu 46 285 -24 1381 169 103 63 chr6 22331697 22332064 -166947490 + MLT1B LTR MaLR 1 382 -8 2158 102 7 3 chr6 22332811 22333138 -166946416 - AluSx SINE Alu 0 328 1 2137 125 0 13 chr6 22333407 22333711 -166945843 + AluSx SINE Alu 1 300 -12 298 316 0 11 chr6 22334191 22334286 -166945268 + GA-rich Low_complexity Low_complexity 3 96 0 344 248 92 46 chr6 22334319 22334557 -166944997 + L1M4 LINE L1 3791 4039 -2107 692 199 0 8 chr6 22334581 22334712 -166944842 + FLAM_C SINE Alu 2 131 -12 1506 170 25 28 chr6 22334719 22335001 -166944553 + AluJo SINE Alu 1 281 -31 1197 263 28 12 chr6 22335150 22335473 -166944081 + MER93a LTR ERV1 75 402 0 1799 171 3 0 chr6 22335682 22335975 -166943579 + AluJo SINE Alu 7 300 -12 2347 110 0 10 chr6 22336901 22337211 -166942343 - AluSx SINE Alu -5 307 1 401 218 40 30 chr6 22337968 22338069 -166941485 - MER5A DNA MER1_type -84 105 4 345 223 58 10 chr6 22338370 22338473 -166941081 + Charlie8 DNA MER1_type 1 108 -2309 327 351 0 30 chr6 22338474 22338605 -166940949 - MER5B DNA MER1_type 0 178 52 2344 169 14 0 chr6 22338606 22339025 -166940529 - L1MC3 LINE L1 0 7785 7361 246 261 0 15 chr6 22339026 22339091 -166940463 - MER5B DNA MER1_type -114 64 1 695 148 0 9 chr6 22339115 22339223 -166940331 + AluJ SINE Alu 24 130 -182 181 288 38 38 chr6 22339437 22339517 -166940037 + L2 LINE L2 3193 3272 0 727 164 8 8 chr6 22339599 22339721 -166939833 + AluJ SINE Alu 2 123 -189 855 229 0 7 chr6 22339774 22339952 -166939602 + AluJ SINE Alu 132 308 0 234 135 0 0 chr6 22340029 22340066 -166939488 + MLT1J LTR MaLR 99 135 -376 436 66 33 0 chr6 22340084 22340145 -166939409 + MADE1 DNA Mariner 2 64 -16 442 289 106 29 chr6 22340668 22340876 -166938678 + MLT1J LTR MaLR 241 464 -47 830 128 0 16 chr6 22340976 22341101 -166938453 - FLAM_A SINE Alu -10 123 1 504 186 39 0 chr6 22341417 22341519 -166938035 - L2 LINE L2 -22 3291 3186 285 317 106 0 chr6 22341959 22342082 -166937472 - MIR SINE MIR -31 231 96 1358 94 0 6 chr6 22342209 22342389 -166937165 - AluSg/x SINE Alu -7 303 125 984 269 100 59 chr6 22343065 22343593 -166935961 - MLT1K LTR MaLR -8 580 31 218 325 78 0 chr6 22344956 22345065 -166934489 - MIR SINE MIR -65 143 28 429 281 141 5 chr6 22345868 22346053 -166933501 + MIR SINE MIR 4 213 -49 1852 137 7 25 chr6 22347559 22347844 -166931710 + AluJb SINE Alu 1 280 -32 213 39 0 0 chr6 22347849 22347875 -166931679 + (CA)n Simple_repeat Simple_repeat 1 26 0 2469 28 42 0 chr6 22348232 22348520 -166931034 + AluY SINE Alu 1 300 -11 272 294 56 32 chr6 22348521 22348647 -166930907 - MER94 DNA DNA -4 130 2 259 19 0 111 chr6 22349888 22349942 -166929612 + (TA)n Simple_repeat Simple_repeat 1 48 0 408 88 0 0 chr6 22349942 22349999 -166929555 + (TG)n Simple_repeat Simple_repeat 2 58 0 607 306 23 9 chr6 22350458 22350674 -166928880 + MIR SINE MIR 30 248 -14 2186 107 3 0 chr6 22351131 22351430 -166928124 - AluY SINE Alu -11 300 1 695 176 16 0 chr6 22352027 22352152 -166927402 - FLAM_A SINE Alu -2 131 5 421 189 242 0 chr6 22352177 22352272 -166927282 + MER33 DNA MER1_type 1 118 -206 894 191 27 16 chr6 22352273 22352461 -166927093 + AluJo SINE Alu 117 306 -6 706 138 78 6 chr6 22352474 22352641 -166926913 + MER33 DNA MER1_type 127 305 -19 884 199 18 6 chr6 22353362 22353574 -166925980 - AluSg/x SINE Alu 0 347 134 1476 254 72 19 chr6 22353575 22354208 -166925346 + L2 LINE L2 2622 3312 -1 387 298 90 53 chr6 22354243 22354533 -166925021 - L2 LINE L2 -125 3188 2873 2218 97 3 7 chr6 22354533 22354832 -166924722 + AluSq SINE Alu 1 298 -15 387 298 90 53 chr6 22354832 22354944 -166924610 - L2 LINE L2 -440 2873 2767 1648 235 47 28 chr6 22355465 22355649 -166923905 + MLT1D LTR MaLR 1 180 -325 2417 83 0 49 chr6 22355649 22355975 -166923579 + AluSp SINE Alu 1 310 -3 1648 235 47 28 chr6 22355975 22356283 -166923271 + MLT1D LTR MaLR 180 502 -3 1994 156 21 9 chr6 22356370 22356710 -166922844 - MER2 DNA MER2_type 0 344 1 301 98 0 0 chr6 22356807 22356848 -166922706 - MER2 DNA MER2_type -303 42 2 2295 101 0 23 chr6 22357613 22357921 -166921633 + AluSx SINE Alu 1 301 -11 223 271 0 57 chr6 22357937 22358007 -166921547 + L2 LINE L2 3199 3264 -8 241 293 13 0 chr6 22358021 22358096 -166921458 - L2 LINE L2 -1041 2273 2198 180 309 0 36 chr6 22358822 22358906 -166920648 - L2 LINE L2 -3 3269 3189 23 0 0 0 chr6 22359621 22359644 -166919910 + AT_rich Low_complexity Low_complexity 1 23 0 1789 176 3 3 chr6 22359644 22359934 -166919620 - AluJo SINE Alu -22 290 1 2196 115 0 0 chr6 22359958 22360245 -166919309 + AluSx SINE Alu 1 287 -25 213 196 0 0 chr6 22360398 22360449 -166919105 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 214 307 89 50 chr6 22360990 22361091 -166918463 - L2 LINE L2 0 3272 3168 451 225 0 0 chr6 22361445 22361525 -166918029 + MLT1G1 LTR MaLR 8 87 -508 526 196 4 6 chr6 22361529 22361774 -166917780 + AluJb SINE Alu 1 300 -2 838 220 12 0 chr6 22361812 22361980 -166917574 + AluSg/x SINE Alu 137 306 -6 1683 233 103 19 chr6 22362018 22362482 -166917072 + MLT1G3 LTR MaLR 28 530 0 951 215 17 0 chr6 22363083 22363255 -166916299 + MER45A DNA AcHobo 1 175 -3 1886 162 0 13 chr6 22363310 22363624 -166915930 + AluJb SINE Alu 1 310 -2 477 139 0 25 chr6 22363834 22363913 -166915641 + Tigger2 DNA MER2_type 1 77 -2641 * 2812 118 18 29 chr6 22363894 22364345 -166915209 + Tigger2 DNA MER2_type 2273 2718 0 2291 98 3 22 chr6 22364390 22364707 -166914847 - AluY SINE Alu 0 311 1 2207 143 95 23 chr6 22365167 22365566 -166913988 + MSTA LTR MaLR 1 428 0 2262 85 3 0 chr6 22366390 22366672 -166912882 - AluSx SINE Alu -29 283 1 787 145 40 20 chr6 22366672 22366824 -166912730 - L1MC1 LINE L1 -3 6330 6176 3626 139 15 11 chr6 22366681 22367292 -166912262 - L1MC1 LINE L1 -15 6318 5706 22 56 0 0 chr6 22367300 22367336 -166912218 + AT_rich Low_complexity Low_complexity 1 36 0 2165 91 7 3 chr6 22367855 22368153 -166911401 - AluSp SINE Alu -14 299 1 1884 114 61 0 chr6 22368181 22368461 -166911093 + AluSg SINE Alu 1 297 -13 306 284 88 25 chr6 22368480 22368684 -166910870 - L1ME LINE L1 -282 5839 5623 661 273 110 9 chr6 22368799 22369075 -166910479 - MLT1J LTR MaLR -146 304 40 292 249 76 27 chr6 22369088 22369273 -166910281 - L1ME LINE L1 -513 5608 5384 957 261 95 46 chr6 22369743 22370133 -166909421 - MLT1I LTR MaLR 0 409 1 245 400 61 0 chr6 22370242 22370357 -166909197 + L2 LINE L2 3144 3265 -7 1960 123 3 3 chr6 22370411 22370696 -166908858 + AluSq SINE Alu 1 285 -28 904 246 128 35 chr6 22371284 22371650 -166907904 - MLT1I LTR MaLR -2 407 8 2228 75 24 0 chr6 22372448 22372740 -166906814 - AluSq SINE Alu -14 299 1 475 291 106 13 chr6 22372894 22373131 -166906423 - L1ME4a LINE L1 -258 5863 5605 1452 248 111 12 chr6 22373131 22373636 -166905918 + MLT1G LTR MaLR 1 590 0 374 288 17 8 chr6 22373636 22373754 -166905800 - L1ME4a LINE L1 -512 5609 5491 251 179 71 24 chr6 22373792 22373876 -166905678 - L1MC5 LINE L1 -37 7924 7837 886 223 22 5 chr6 22373974 22374158 -166905396 - AluJo SINE Alu -5 307 121 603 307 11 38 chr6 22374277 22374541 -166905013 - MIR SINE MIR -1 261 5 1789 125 0 48 chr6 22375684 22375996 -166903558 + AluJo SINE Alu 1 297 -15 465 211 79 0 chr6 22376227 22376341 -166903213 - MIR SINE MIR -18 244 122 2045 123 10 3 chr6 22377398 22377700 -166901854 - AluSx SINE Alu -8 304 1 423 0 0 0 chr6 22377806 22377853 -166901701 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2168 104 0 0 chr6 22378330 22378629 -166900925 + AluSq SINE Alu 1 299 -14 327 327 136 45 chr6 22378691 22378809 -166900745 + L2 LINE L2 2153 2259 -1055 252 0 0 0 chr6 22378809 22378837 -166900717 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 351 0 0 0 chr6 22378836 22378875 -166900679 + (TG)n Simple_repeat Simple_repeat 2 40 0 327 327 136 45 chr6 22378837 22379291 -166900263 + L2 LINE L2 2259 2736 -578 317 294 42 8 chr6 22379328 22379447 -166900107 + LTR33 LTR ERVL 3 125 -396 282 186 17 17 chr6 22379687 22379746 -166899808 + LTR33 LTR ERVL 456 514 -7 357 278 93 0 chr6 22379747 22379844 -166899710 + L2 LINE L2 3167 3272 0 1601 173 0 35 chr6 22379985 22380119 -166899435 + AluJo SINE Alu 9 146 -166 2105 101 0 19 chr6 22380119 22380426 -166899128 + AluSx SINE Alu 1 301 -11 1601 173 0 35 chr6 22380426 22380580 -166898974 + AluJo SINE Alu 146 287 -25 487 331 35 7 chr6 22380834 22380979 -166898575 - L2 LINE L2 -8 3264 3116 2645 134 71 5 chr6 22381141 22381565 -166897989 - LTR47A LTR ERVL 0 452 1 787 171 47 12 chr6 22381762 22381932 -166897622 + AluJo SINE Alu 121 296 -16 221 262 49 0 chr6 22382943 22383004 -166896550 + L2 LINE L2 3250 3313 0 302 264 73 9 chr6 22383012 22383122 -166896432 - L1MC/D LINE L1 -1950 5858 5742 254 179 15 15 chr6 22383182 22383254 -166896300 - L1MC/D LINE L1 -526 5595 5525 2024 64 40 47 chr6 22383968 22384264 -166895290 - AluY SINE Alu -17 294 1 326 239 9 80 chr6 22384857 22384970 -166894584 + MLT1K LTR MaLR 180 284 -304 1545 179 21 3 chr6 22385211 22385501 -166894053 + AluJb SINE Alu 1 295 -17 1882 129 0 3 chr6 22385501 22385787 -166893767 + AluSq SINE Alu 21 305 -8 275 304 7 93 chr6 22387446 22387543 -166892011 + MIR SINE MIR 56 136 -118 2072 122 3 0 chr6 22387543 22387854 -166891700 + AluSx SINE Alu 1 312 0 275 304 7 93 chr6 22387854 22387906 -166891648 + MIR SINE MIR 136 191 -63 181 263 0 35 chr6 22388164 22388221 -166891333 - L2 LINE L2 -70 3202 3148 244 369 0 27 chr6 22388241 22388352 -166891202 + MER5B DNA MER1_type 3 110 -68 295 234 202 0 chr6 22388571 22388665 -166890889 - L2 LINE L2 0 3313 3201 2027 101 7 13 chr6 22389324 22389631 -166889923 + AluSx SINE Alu 1 305 -7 246 241 18 116 chr6 22389923 22390035 -166889519 + 7SK RNA RNA 34 134 -59 1250 182 103 114 chr6 22390151 22390696 -166888858 - LTR8A LTR ERV1 -2 725 187 2326 69 3 10 chr6 22390747 22391050 -166888504 - AluY SINE Alu -10 301 1 292 196 76 65 chr6 22391071 22391163 -166888391 - LTR8 LTR ERV1 -598 93 1 2040 134 0 7 chr6 22391756 22392062 -166887492 - AluSx SINE Alu -8 304 1 1703 157 70 107 chr6 22392275 22392760 -166886794 - MLT1C LTR MaLR 0 467 1 2045 118 0 3 chr6 22392946 22393242 -166886312 + AluSg SINE Alu 1 295 -15 385 132 13 13 chr6 22393242 22393318 -166886236 + GA-rich Low_complexity Low_complexity 1 76 0 272 224 0 30 chr6 22393319 22393386 -166886168 + MIR SINE MIR 63 127 -81 2066 134 0 0 chr6 22393520 22393819 -166885735 - AluSq SINE Alu -14 299 1 2030 141 0 3 chr6 22394100 22394413 -166885141 - AluJb SINE Alu 0 312 1 629 299 90 43 chr6 22394645 22394990 -166884564 + LTR16C LTR ERVL 99 459 -32 651 301 125 24 chr6 22395051 22395386 -166884168 - MLT1K LTR MaLR -11 577 209 195 129 0 0 chr6 22395402 22395433 -166884121 + (TATG)n Simple_repeat Simple_repeat 2 32 0 454 153 0 38 chr6 22395767 22395898 -166883656 + (CA)n Simple_repeat Simple_repeat 2 127 0 223 265 0 0 chr6 22395928 22395977 -166883577 - L2 LINE L2 -1 3271 3223 2082 113 13 3 chr6 22396011 22396320 -166883234 + AluSx SINE Alu 1 312 0 1421 210 26 46 chr6 22396488 22396836 -166882718 - MER58B DNA MER1_type 0 341 1 1944 98 56 7 chr6 22396916 22397201 -166882353 - AluSg SINE Alu -11 299 1 410 320 57 39 chr6 22397398 22397679 -166881875 + L2 LINE L2 3028 3313 0 236 324 174 37 chr6 22397791 22398032 -166881522 - L2 LINE L2 -349 2965 2692 206 292 22 45 chr6 22398222 22398311 -166881243 - L2 LINE L2 -1018 2296 2210 930 179 29 43 chr6 22398311 22398518 -166881036 - MER3 DNA MER1_type -4 205 2 1250 144 40 36 chr6 22398566 22398816 -166880738 + L1MB4 LINE L1 5586 5836 -344 15519 125 17 21 chr6 22398816 22399367 -166880187 - Tigger1 DNA MER2_type 0 2418 1866 1649 57 40 31 chr6 22399367 22399595 -166879959 + MER30 DNA MER1_type 1 230 0 15519 125 17 21 chr6 22399595 22399741 -166879813 - Tigger1 DNA MER2_type -552 1866 1721 1379 210 0 22 chr6 22399741 22400060 -166879494 - AluJo SINE Alu 0 312 1 15519 125 17 21 chr6 22400060 22400183 -166879371 - Tigger1 DNA MER2_type -697 1721 1599 2320 72 7 0 chr6 22400183 22400490 -166879064 - AluY SINE Alu -2 309 1 15519 125 17 21 chr6 22400490 22402096 -166877458 - Tigger1 DNA MER2_type -819 1599 1 1727 164 42 12 chr6 22402097 22402432 -166877122 + L1MB4 LINE L1 5836 6180 0 764 153 8 16 chr6 22402934 22403058 -166876496 + FLAM_C SINE Alu 1 123 -10 2123 92 0 11 chr6 22403064 22403385 -166876169 + AluSc SINE Alu 1 318 0 2255 83 0 0 chr6 22403390 22403678 -166875876 + AluSx SINE Alu 1 288 -24 25 0 0 0 chr6 22403685 22403710 -166875844 + AT_rich Low_complexity Low_complexity 1 25 0 2135 88 14 3 chr6 22404413 22404709 -166874845 + AluSx SINE Alu 2 300 -12 401 292 41 41 chr6 22404709 22404904 -166874650 + L1ME3A LINE L1 5967 6161 -9 265 276 92 10 chr6 22405174 22405272 -166874282 + MER5A DNA MER1_type 1 106 -83 221 143 0 20 chr6 22405889 22405938 -166873616 + (TA)n Simple_repeat Simple_repeat 1 48 0 511 296 45 17 chr6 22406141 22406317 -166873237 - MER5A DNA MER1_type -3 186 6 1593 154 7 37 chr6 22406409 22406707 -166872847 + AluJb SINE Alu 1 289 -23 1454 232 126 30 chr6 22406762 22407223 -166872331 - MLT1D LTR MaLR 0 505 1 273 289 117 23 chr6 22407620 22407748 -166871806 - MIR SINE MIR -3 259 120 2238 100 3 0 chr6 22407749 22408049 -166871505 - AluSx SINE Alu -11 301 1 978 103 0 0 chr6 22408049 22408185 -166871369 - AluSq/x SINE Alu -176 136 1 352 248 5 17 chr6 22408185 22408270 -166871284 - MIR SINE MIR -121 87 3 2140 109 0 0 chr6 22408868 22409161 -166870393 + AluSq SINE Alu 1 293 -20 25 0 0 0 chr6 22410382 22410407 -166869147 + GC_rich Low_complexity Low_complexity 1 25 0 231 36 0 0 chr6 22411229 22411257 -166868297 + (CCG)n Simple_repeat Simple_repeat 2 29 0 213 39 0 0 chr6 22411459 22411485 -166868069 + (CGG)n Simple_repeat Simple_repeat 3 28 0 213 217 0 65 chr6 22412220 22412312 -166867242 + (CCCCG)n Simple_repeat Simple_repeat 4 89 0 308 299 5 5 chr6 22412522 22412659 -166866895 + C-rich Low_complexity Low_complexity 1 137 0 1317 61 6 0 chr6 22414210 22414375 -166865179 - AluSg/x SINE Alu -10 302 137 2221 77 0 0 chr6 22414408 22414693 -166864861 + AluSc SINE Alu 1 285 -24 653 268 26 16 chr6 22415088 22415282 -166864272 + MIR SINE MIR 66 261 -1 21 36 0 0 chr6 22417385 22417413 -166862141 + AT_rich Low_complexity Low_complexity 1 28 0 523 274 17 29 chr6 22417790 22417965 -166861589 - MIR3 SINE MIR -3 205 33 898 198 41 0 chr6 22419204 22419401 -166860153 + MIR SINE MIR 33 237 -25 2073 130 0 10 chr6 22419479 22419787 -166859767 - AluSx SINE Alu -7 305 1 215 288 56 64 chr6 22420839 22420964 -166858590 - L2 LINE L2 -17 3296 3173 496 178 147 80 chr6 22421110 22421273 -166858281 + MER5B DNA MER1_type 5 178 0 446 293 122 37 chr6 22421455 22421749 -166857805 - MER102b DNA MER1_type -22 319 1 716 281 54 9 chr6 22421760 22421984 -166857570 - MIR SINE MIR 0 262 29 192 282 127 14 chr6 22422072 22422143 -166857411 - MER5A DNA MER1_type 0 189 111 * 241 257 43 14 chr6 22422094 22422164 -166857390 + MER5A DNA MER1_type 43 114 -75 209 282 218 0 chr6 22423736 22423846 -166855708 + MIR SINE MIR 64 197 -65 822 163 62 12 chr6 22424289 22424449 -166855105 - MER20 DNA MER1_type -51 168 1 22 56 0 0 chr6 22424510 22424546 -166855008 + AT_rich Low_complexity Low_complexity 1 36 0 539 277 88 3 chr6 22424829 22425010 -166854544 + MIR SINE MIR 50 242 -20 496 292 8 15 chr6 22425189 22425319 -166854235 - L2 LINE L2 -3 3310 3182 638 208 67 67 chr6 22425381 22425559 -166853995 + MER5A DNA MER1_type 2 179 -10 24 67 0 0 chr6 22426373 22426418 -166853136 + AT_rich Low_complexity Low_complexity 1 45 0 31 0 0 0 chr6 22427746 22427777 -166851777 + AT_rich Low_complexity Low_complexity 1 31 0 834 285 66 45 chr6 22427833 22428363 -166851191 - L1ME4a LINE L1 -104 6017 5477 1874 133 3 11 chr6 22428395 22428731 -166850823 - AluSx SINE Alu 0 334 1 1295 169 0 0 chr6 22428733 22428946 -166850608 - AluJb SINE Alu -14 298 86 548 287 27 5 chr6 22429016 22429204 -166850350 - MIR SINE MIR -2 260 69 234 0 0 0 chr6 22429304 22429330 -166850224 + (TG)n Simple_repeat Simple_repeat 2 27 0 14803 135 25 12 chr6 22429340 22430552 -166849002 - Tigger1 DNA MER2_type 0 2418 1223 1706 55 0 0 chr6 22430552 22430753 -166848801 - 7SLRNA srpRNA srpRNA -119 201 1 14803 135 25 12 chr6 22430753 22431902 -166847652 - Tigger1 DNA MER2_type -1195 1223 27 1916 165 58 3 chr6 22431998 22432325 -166847229 - MER7A DNA MER2_type -2 344 2 2296 86 0 3 chr6 22432344 22432634 -166846920 - AluSg SINE Alu -21 289 1 2381 76 0 3 chr6 22432644 22432935 -166846619 - AluSq SINE Alu -23 290 1 360 0 0 0 chr6 22433076 22433116 -166846438 + (TG)n Simple_repeat Simple_repeat 2 41 0 254 196 0 0 chr6 22433245 22433296 -166846258 + MER4-int LTR ERV1 1112 1162 -5436 305 267 35 69 chr6 22433316 22433518 -166846036 - L1ME4a LINE L1 -1306 4840 4646 491 264 88 26 chr6 22433611 22433804 -166845750 - MIR SINE MIR -49 213 9 2345 84 0 29 chr6 22434253 22434563 -166844991 - AluSx SINE Alu -11 301 1 302 213 160 21 chr6 22436349 22436443 -166843111 + MIR3 SINE MIR 93 199 -9 215 229 215 97 chr6 22436989 22437079 -166842475 + MIR SINE MIR 14 92 -170 2334 113 3 0 chr6 22437079 22437388 -166842166 - AluSx SINE Alu -2 310 1 215 229 215 97 chr6 22437388 22437441 -166842113 + MIR SINE MIR 92 174 -88 1448 168 0 5 chr6 22437817 22438037 -166841517 + MER20 DNA MER1_type 1 219 0 941 166 155 10 chr6 22438127 22438320 -166841234 + Tigger7 DNA MER2_type 9 229 -476 620 154 19 0 chr6 22438336 22438440 -166841114 + Tigger7 DNA MER2_type 2382 2487 0 33 0 0 0 chr6 22438748 22438781 -166840773 + AT_rich Low_complexity Low_complexity 1 33 0 1001 153 21 26 chr6 22439000 22439190 -166840364 - MER53 DNA DNA 0 189 1 1783 139 0 0 chr6 22439652 22439910 -166839644 + AluSx SINE Alu 45 302 -10 386 227 72 0 chr6 22440560 22440657 -166838897 + LTR16C LTR ERVL 388 491 0 1549 175 118 3 chr6 22440665 22440996 -166838558 - MLT1B LTR MaLR -3 387 19 180 302 19 0 chr6 22441453 22441506 -166838048 + MIR3 SINE MIR 146 199 -9 467 265 141 14 chr6 22441707 22441993 -166837561 + L2 LINE L2 2909 3312 -1 1986 160 19 43 chr6 22442288 22442706 -166836848 + Charlie4a DNA MER1_type 85 492 -16 609 141 33 0 chr6 22444050 22444142 -166835412 - AluJ/FLAM SINE Alu -216 96 2 2453 81 0 0 chr6 22444336 22444634 -166834920 + AluSc SINE Alu 1 298 -11 2401 108 0 0 chr6 22444840 22445146 -166834408 - AluSx SINE Alu -6 306 1 1446 149 27 0 chr6 22445217 22445318 -166834236 + MER30 DNA MER1_type 3 100 -130 243 0 0 0 chr6 22445318 22445345 -166834209 + (CA)n Simple_repeat Simple_repeat 2 28 0 1446 149 27 0 chr6 22445345 22445465 -166834089 + MER30 DNA MER1_type 100 230 0 1626 175 3 37 chr6 22445703 22446000 -166833554 + AluJo SINE Alu 1 287 -25 311 274 116 41 chr6 22446633 22446779 -166832775 - MIR3 SINE MIR -30 178 22 281 268 131 65 chr6 22446907 22447075 -166832479 + MIR SINE MIR 7 185 -77 1721 141 40 24 chr6 22448396 22448693 -166830861 - AluJo SINE Alu -10 302 1 3368 150 27 41 chr6 22449884 22450439 -166829115 - L1MB4 LINE L1 -25 6155 5609 1743 139 54 31 chr6 22450439 22450733 -166828821 - AluSx SINE Alu -11 301 1 3368 150 27 41 chr6 22450733 22450817 -166828737 - L1MB4 LINE L1 -571 5609 5525 2183 95 10 3 chr6 22451552 22451846 -166827708 + AluSq SINE Alu 1 296 -17 1032 171 34 6 chr6 22452323 22452498 -166827056 + AluJo SINE Alu 1 180 -132 1558 170 83 0 chr6 22452795 22453071 -166826483 + AluJb SINE Alu 1 299 -13 284 215 63 13 chr6 22453803 22453882 -166825672 + L2 LINE L2 3226 3308 -5 1932 81 12 4 chr6 22454104 22454363 -166825191 - AluSg SINE Alu -9 301 41 2945 156 117 9 chr6 22454523 22455069 -166824485 - MER6A DNA MER2_type 0 605 1 1939 120 7 30 chr6 22455431 22455732 -166823822 - AluSx SINE Alu -18 294 1 228 67 0 0 chr6 22456205 22456235 -166823319 + (GA)n Simple_repeat Simple_repeat 1 30 0 495 237 8 15 chr6 22456711 22456842 -166822712 - MIR3 SINE MIR -26 182 53 605 210 89 25 chr6 22458326 22458483 -166821071 - L1MC/D LINE L1 -2075 5733 5567 6702 119 13 7 chr6 22458483 22461198 -166818356 - L1PA13 LINE L1 -4 6159 3374 612 152 20 0 chr6 22461240 22461339 -166818215 - U6 snRNA snRNA -6 101 1 543 258 56 76 chr6 22461383 22461533 -166818021 - L1MC/D LINE L1 -832 5314 5163 2251 88 0 20 chr6 22461533 22461830 -166817724 + AluSc SINE Alu 1 291 -18 543 258 56 76 chr6 22461830 22461857 -166817697 - L1MC/D LINE L1 -983 5163 5137 279 0 0 0 chr6 22461857 22461888 -166817666 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 543 258 56 76 chr6 22461888 22462268 -166817286 - L1MC/D LINE L1 -1009 5137 4956 1786 170 20 0 chr6 22462268 22462574 -166816980 - AluJo SINE Alu 0 312 1 543 258 56 76 chr6 22462574 22462655 -166816899 - L1MC/D LINE L1 -1190 4956 4875 756 189 67 33 chr6 22463010 22463190 -166816364 + MER5A DNA MER1_type 1 186 -3 514 282 17 23 chr6 22463729 22463903 -166815651 + MER5B DNA MER1_type 1 173 -5 220 194 177 32 chr6 22465089 22465151 -166814403 - MIR3 SINE MIR -49 159 89 21 0 0 0 chr6 22465177 22465198 -166814356 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 22465567 22465594 -166813960 + AT_rich Low_complexity Low_complexity 1 27 0 1747 157 6 45 chr6 22466040 22466352 -166813202 - AluSx SINE Alu -12 300 1 2058 105 7 33 chr6 22467847 22468153 -166811401 + AluSx SINE Alu 1 298 -14 1812 134 31 0 chr6 22468554 22468815 -166810739 + AluJb SINE Alu 29 297 -15 395 278 18 100 chr6 22469357 22469579 -166809975 - L1ME LINE L1 -313 5877 5681 2447 100 0 0 chr6 22469579 22469890 -166809664 + AluSx SINE Alu 1 311 -1 395 278 18 100 chr6 22469890 22469948 -166809606 - L1ME LINE L1 -509 5681 5620 2237 77 0 4 chr6 22470077 22470351 -166809203 + AluY SINE Alu 1 273 -38 232 293 111 13 chr6 22470850 22471075 -166808479 - L1P4 LINE L1 -665 5501 5255 240 278 162 16 chr6 22471189 22471380 -166808174 - L1ME LINE L1 -1155 5060 4842 2211 129 0 0 chr6 22471392 22471694 -166807860 - AluSx SINE Alu -10 302 1 1365 147 14 142 chr6 22471812 22472158 -166807396 - AluJo SINE Alu 0 302 1 721 195 0 0 chr6 22472203 22472326 -166807228 + FLAM_C SINE Alu 2 124 -19 728 222 49 15 chr6 22472350 22472553 -166807001 - L1ME LINE L1 -4582 1814 1605 3215 154 47 25 chr6 22472603 22473155 -166806399 - MER21B LTR ERV1 -52 811 248 1388 152 124 56 chr6 22473156 22473478 -166806076 - MER21B-int LTR ERV1 -1783 2408 2065 1318 192 46 46 chr6 22473466 22473768 -166805786 - MER21B-int LTR ERV1 -2242 1949 1648 * 761 211 7 0 chr6 22473821 22473968 -166805586 - MER21B-int LTR ERV1 -2076 4682 4535 1484 227 28 25 chr6 22474047 22474400 -166805154 - MER21B-int LTR ERV1 -2554 1637 1284 5462 68 84 40 chr6 22474402 22475068 -166804486 - L1PB1 LINE L1 0 6151 5439 1992 140 0 0 chr6 22475068 22475347 -166804207 - AluSx SINE Alu -32 280 2 5462 68 84 40 chr6 22475347 22475514 -166804040 - L1PB1 LINE L1 -712 5439 5281 1668 265 32 47 chr6 22475514 22475618 -166803936 - MER21B-int LTR ERV1 -2897 1294 1190 2242 88 7 7 chr6 22475618 22475915 -166803639 - AluSg1 SINE Alu -12 297 1 1668 265 32 47 chr6 22475915 22476316 -166803238 - MER21B-int LTR ERV1 -3001 1190 797 3311 170 33 41 chr6 22476316 22476957 -166802597 - MER21B-int LTR ERV1 -3555 636 1 4049 170 36 10 chr6 22477017 22477712 -166801842 - MER21B LTR ERV1 -65 798 86 283 309 0 12 chr6 22477746 22477827 -166801727 - LTR67 LTR ERVL -476 81 2 723 252 100 41 chr6 22477852 22478341 -166801213 + HAL1 LINE L1 1812 2372 -135 185 268 0 18 chr6 22478635 22478691 -166800863 - L2 LINE L2 -667 2647 2593 254 133 67 0 chr6 22479287 22479332 -166800222 + L2 LINE L2 3262 3309 -4 293 244 30 60 chr6 22479911 22480079 -166799475 - L1ME4a LINE L1 -4 6117 5955 2223 101 10 0 chr6 22480236 22480534 -166799020 + AluSq SINE Alu 1 301 -12 292 250 8 52 chr6 22480691 22480817 -166798737 - L1ME4a LINE L1 -34 6036 1204 408 20 0 0 chr6 22480961 22481010 -166798544 + (CA)n Simple_repeat Simple_repeat 2 50 0 1475 192 75 0 chr6 22481341 22481622 -166797932 + AluJo SINE Alu 2 303 -9 205 229 241 0 chr6 22481630 22481713 -166797841 + MIR SINE MIR 66 168 -94 431 309 39 11 chr6 22482264 22482445 -166797109 + MIR SINE MIR 73 258 -4 338 321 58 14 chr6 22482492 22482795 -166796759 - MLT1K LTR MaLR -37 551 199 701 166 0 65 chr6 22483033 22483172 -166796382 - FLAM_A SINE Alu -3 130 1 1685 149 87 4 chr6 22484453 22484728 -166794826 - AluSx SINE Alu -14 298 1 2381 75 0 7 chr6 22485025 22485320 -166794234 + AluY SINE Alu 1 293 -18 529 270 41 63 chr6 22485324 22485677 -166793877 - MLT1K LTR MaLR -55 533 151 1047 125 69 86 chr6 22485971 22486074 -166793480 - Tigger2a DNA MER2_type -2278 430 327 497 192 117 17 chr6 22486074 22486194 -166793360 - FLAM_A SINE Alu -1 132 1 1047 125 69 86 chr6 22486194 22486322 -166793232 - Tigger2a DNA MER2_type -2381 327 203 516 219 70 0 chr6 22486478 22486592 -166792962 - MER5A DNA MER1_type -6 183 62 1113 121 17 116 chr6 22486661 22486845 -166792709 - Tigger2a DNA MER2_type -2499 209 51 1852 149 0 23 chr6 22486845 22487147 -166792407 + AluJb SINE Alu 1 295 -17 1113 121 17 116 chr6 22487147 22487194 -166792360 - Tigger2a DNA MER2_type -2657 51 1 619 170 222 0 chr6 22487203 22487356 -166792198 - MER33 DNA MER1_type -137 187 1 2202 105 3 7 chr6 22487462 22487757 -166791797 + AluSx SINE Alu 1 294 -18 241 241 69 0 chr6 22488221 22488279 -166791275 - L2 LINE L2 -42 3230 3169 192 175 25 0 chr6 22489809 22489849 -166789705 - L2 LINE L2 -1 3312 3272 238 273 0 0 chr6 22490455 22490510 -166789044 + CT-rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr6 22491270 22491299 -166788255 + AT_rich Low_complexity Low_complexity 1 29 0 201 74 0 0 chr6 22491535 22491562 -166787992 + (TA)n Simple_repeat Simple_repeat 1 27 0 267 133 0 0 chr6 22491973 22492018 -166787536 + (TG)n Simple_repeat Simple_repeat 2 46 0 298 57 0 0 chr6 22493350 22493385 -166786169 - U2 snRNA snRNA -153 35 1 1214 126 0 0 chr6 22493741 22493908 -166785646 + AluSg/x SINE Alu 136 302 -10 2039 127 3 7 chr6 22494231 22494530 -166785024 + AluSx SINE Alu 1 298 -14 2504 42 0 0 chr6 22495220 22495507 -166784047 - AluY SINE Alu -24 287 1 1022 196 4 71 chr6 22496651 22496891 -166782663 - MER58A DNA MER1_type 0 224 1 2262 79 4 0 chr6 22497650 22497953 -166781601 + AluSc SINE Alu 2 305 0 975 122 20 0 chr6 22498272 22498419 -166781135 + FAM SINE Alu 20 169 -16 1785 159 36 0 chr6 22498628 22498905 -166780649 + AluJo SINE Alu 1 287 -25 24 32 0 0 chr6 22499510 22499541 -166780013 + AT_rich Low_complexity Low_complexity 1 31 0 196 281 18 0 chr6 22501011 22501068 -166778486 + L2 LINE L2 3252 3309 -4 196 115 0 58 chr6 22502143 22502195 -166777359 + (TTTTTG)n Simple_repeat Simple_repeat 5 53 0 2398 90 6 6 chr6 22502721 22503033 -166776521 - AluSx SINE Alu 0 312 1 358 261 67 25 chr6 22503320 22503439 -166776115 - L3 LINE CR1 -547 1030 907 335 180 22 22 chr6 22503537 22503626 -166775928 - L1ME4a LINE L1 -105 6016 5928 2317 106 3 0 chr6 22503626 22503937 -166775617 - AluSx SINE Alu 0 312 1 1620 162 0 24 chr6 22503949 22504246 -166775308 - AluJo SINE Alu 0 312 23 2179 118 3 0 chr6 22504403 22504699 -166774855 - AluSx SINE Alu -15 297 1 978 218 105 16 chr6 22504820 22505077 -166774477 - L1MB5 LINE L1 -10 6164 5885 1749 107 21 0 chr6 22505077 22505319 -166774235 - AluSx SINE Alu -6 306 60 1963 115 23 36 chr6 22505487 22505791 -166773763 + AluSx SINE Alu 1 300 -12 2431 80 0 7 chr6 22505791 22506091 -166773463 + AluSc SINE Alu 1 298 -11 284 159 0 16 chr6 22506212 22506275 -166773279 + GA-rich Low_complexity Low_complexity 4 65 0 192 267 0 0 chr6 22506394 22506439 -166773115 - L2 LINE L2 -22 3291 3247 360 0 0 0 chr6 22508466 22508506 -166771048 + (TG)n Simple_repeat Simple_repeat 2 41 0 1665 109 0 0 chr6 22508971 22509191 -166770363 - AluSx SINE Alu -75 237 18 1955 135 27 80 chr6 22509191 22509236 -166770318 + L1MB1 LINE L1 5788 5834 -334 716 101 0 0 chr6 22509236 22509335 -166770219 + HY3 scRNA scRNA 2 100 -1 1955 135 27 80 chr6 22509335 22509690 -166769864 + L1MB1 LINE L1 5834 6167 -1 9956 230 49 21 chr6 22509695 22509906 -166769648 + L1M4 LINE L1 2269 2473 -3673 2368 70 3 10 chr6 22509906 22510206 -166769348 + AluY SINE Alu 1 298 -13 9956 230 49 21 chr6 22510206 22510318 -166769236 + L1M4 LINE L1 2473 2580 -3566 2347 104 0 3 chr6 22510318 22510626 -166768928 + AluSx SINE Alu 1 307 -5 9956 230 49 21 chr6 22510626 22512249 -166767305 + L1M4 LINE L1 2580 4156 -1990 2178 91 54 7 chr6 22512249 22512545 -166767009 + AluY SINE Alu 1 310 -1 9956 230 49 21 chr6 22512545 22512710 -166766844 + L1M4 LINE L1 4156 4315 -1831 2434 95 0 0 chr6 22512710 22513014 -166766540 + AluSx SINE Alu 1 304 -8 9956 230 49 21 chr6 22513014 22513697 -166765857 + L1M4 LINE L1 4315 5144 -1002 26 30 0 0 chr6 22513817 22513850 -166765704 + AT_rich Low_complexity Low_complexity 1 33 0 1378 165 0 0 chr6 22514081 22514293 -166765261 + AluSx SINE Alu 1 212 -100 455 69 0 0 chr6 22514293 22514351 -166765203 + AluSq/x SINE Alu 78 135 -177 1879 157 23 0 chr6 22514351 22514656 -166764898 + AluSx SINE Alu 1 312 0 2143 128 7 0 chr6 22515654 22515951 -166763603 - AluSx SINE Alu -13 299 1 2177 109 3 0 chr6 22516196 22516520 -166763034 - AluSq SINE Alu 0 325 1 1358 209 50 26 chr6 22517400 22517695 -166761859 + MLT2D LTR ERVL 68 373 -41 305 24 24 0 chr6 22517695 22517737 -166761817 + (CA)n Simple_repeat Simple_repeat 1 43 0 1358 209 50 26 chr6 22517737 22517780 -166761774 + MLT2D LTR ERVL 373 414 0 1731 140 16 51 chr6 22517843 22518158 -166761396 + AluJo SINE Alu 1 304 -8 404 236 112 39 chr6 22518365 22518543 -166761011 + MLT1K LTR MaLR 395 585 -3 216 0 0 0 chr6 22518595 22518619 -166760935 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 564 165 21 0 chr6 22518751 22518848 -166760706 + MER53 DNA DNA 3 101 -88 1679 113 36 0 chr6 22519011 22519233 -166760321 + AluSx SINE Alu 1 230 -82 692 338 50 7 chr6 22519268 22519567 -166759987 - L2 LINE L2 -564 2750 2439 1574 175 7 24 chr6 22519693 22519985 -166759569 + AluJo SINE Alu 1 287 -25 2480 94 0 0 chr6 22520013 22520321 -166759233 + AluSg SINE Alu 1 308 -2 26 64 0 0 chr6 22520370 22520417 -166759137 + AT_rich Low_complexity Low_complexity 1 47 0 1673 153 52 8 chr6 22520441 22520709 -166758845 - AluJb SINE Alu -22 290 11 367 203 0 0 chr6 22520719 22520788 -166758766 - MIR SINE MIR -110 152 84 2262 175 15 111 chr6 22520856 22521384 -166758170 - MLT1F LTR MaLR -10 532 64 2236 99 3 3 chr6 22521384 22521686 -166757868 + AluY SINE Alu 1 302 -9 2262 175 15 111 chr6 22521686 22521745 -166757809 - MLT1F LTR MaLR -478 64 1 336 281 154 41 chr6 22522015 22522236 -166757318 + L2 LINE L2 2813 3058 -255 2180 113 0 23 chr6 22522486 22522795 -166756759 + AluSx SINE Alu 1 302 -10 26 0 0 0 chr6 22522876 22522902 -166756652 + AT_rich Low_complexity Low_complexity 1 26 0 769 287 26 0 chr6 22522977 22523172 -166756382 + MER63A DNA MER1_type 7 206 -4 1142 164 0 0 chr6 22523547 22523712 -166755842 + FAM SINE Alu 1 165 -10 198 262 0 0 chr6 22523721 22523763 -166755791 - MIR SINE MIR -81 127 86 2222 132 0 6 chr6 22523765 22524076 -166755478 - AluSx SINE Alu -3 309 1 2351 83 0 3 chr6 22524100 22524401 -166755153 - AluY SINE Alu -11 300 1 1765 137 49 7 chr6 22524702 22524986 -166754568 - AluJo SINE Alu -16 296 1 372 299 63 124 chr6 22525181 22525270 -166754284 + MLT1K LTR MaLR 27 120 -468 2171 121 10 0 chr6 22525270 22525568 -166753986 - AluSx SINE Alu -11 301 1 372 299 63 124 chr6 22525568 22525624 -166753930 + MLT1K LTR MaLR 120 178 -410 330 167 0 0 chr6 22525624 22525678 -166753876 + L1MB7 LINE L1 6131 6184 0 372 299 63 124 chr6 22525678 22525879 -166753675 + MLT1K LTR MaLR 178 353 -235 831 226 129 85 chr6 22525976 22526481 -166753073 - MER34B LTR ERV1 0 565 39 1119 164 226 4 chr6 22526499 22526747 -166752807 + AluJo SINE Alu 9 306 0 275 109 19 28 chr6 22526760 22526814 -166752740 - MER34C LTR ERV1 -502 83 1 1969 144 3 7 chr6 22526945 22527244 -166752310 + AluSx SINE Alu 1 298 -14 2288 116 0 3 chr6 22527338 22527649 -166751905 + AluSx SINE Alu 1 310 -2 2349 100 3 0 chr6 22527921 22528222 -166751332 - AluSp SINE Alu -10 303 2 2103 116 0 0 chr6 22528659 22528943 -166750611 + AluSx SINE Alu 1 284 -28 961 189 6 0 chr6 22528976 22529145 -166750409 + AluJb SINE Alu 137 306 -6 33 0 0 0 chr6 22529427 22529460 -166750094 + AT_rich Low_complexity Low_complexity 1 33 0 513 121 0 0 chr6 22529461 22529544 -166750010 - L1MB4 LINE L1 0 6180 6098 2254 101 0 3 chr6 22529544 22529842 -166749712 - AluSx SINE Alu -15 297 1 27 0 0 0 chr6 22529890 22529917 -166749637 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr6 22529938 22529966 -166749588 + AT_rich Low_complexity Low_complexity 1 28 0 4563 131 17 27 chr6 22529966 22530207 -166749347 - L1MA4 LINE L1 -11 6289 6047 1966 146 0 20 chr6 22530207 22530508 -166749046 - AluSx SINE Alu -17 295 1 4563 131 17 27 chr6 22530508 22531015 -166748539 - L1MA4 LINE L1 -253 6047 5548 1718 146 3 51 chr6 22531539 22531854 -166747700 - AluJb SINE Alu -12 300 1 202 188 43 43 chr6 22532172 22532241 -166747313 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 246 266 16 16 chr6 22532555 22532619 -166746935 - MLT1K LTR MaLR -379 209 146 2421 92 0 9 chr6 22533591 22533907 -166745647 - AluSq SINE Alu 0 313 1 558 199 30 66 chr6 22534051 22534123 -166745431 + L1MD3 LINE L1 7826 7899 -96 5483 65 5 0 chr6 22534123 22534780 -166744774 + L1PA6 LINE L1 5495 6154 0 558 199 30 66 chr6 22534780 22534873 -166744681 + L1MD3 LINE L1 7899 7985 -10 1119 268 194 35 chr6 22534880 22535365 -166744189 + L2 LINE L2 2329 2890 -424 1421 135 0 5 chr6 22535368 22535575 -166743979 - AluJo SINE Alu -24 288 83 857 283 62 64 chr6 22535581 22535893 -166743661 + L2 LINE L2 2891 3203 -110 2396 85 10 0 chr6 22535893 22536200 -166743354 - AluSg SINE Alu 0 310 1 857 283 62 64 chr6 22536200 22536293 -166743261 + L2 LINE L2 3203 3295 -18 797 203 16 96 chr6 22536465 22536678 -166742876 - MLT1K LTR MaLR -4 584 392 2409 87 0 0 chr6 22536678 22536977 -166742577 + AluY SINE Alu 1 299 -12 797 203 16 96 chr6 22536977 22537014 -166742540 - MLT1K LTR MaLR -196 392 354 1671 172 10 10 chr6 22537259 22537555 -166741999 + AluJb SINE Alu 11 306 -6 1043 90 0 0 chr6 22537874 22538008 -166741546 + AluSq/x SINE Alu 1 134 -178 2126 115 0 16 chr6 22538009 22538314 -166741240 + AluSx SINE Alu 1 300 -12 1197 123 0 0 chr6 22538623 22538786 -166740768 + AluSx SINE Alu 1 163 -149 24 0 0 0 chr6 22538841 22538865 -166740689 + AT_rich Low_complexity Low_complexity 1 24 0 1612 178 7 7 chr6 22539058 22539345 -166740209 + AluJo SINE Alu 1 287 -25 1621 174 45 3 chr6 22539383 22539671 -166739883 - AluJb SINE Alu -12 300 1 2287 101 0 0 chr6 22539811 22540107 -166739447 - AluSg SINE Alu -14 296 1 2262 105 0 0 chr6 22540560 22540856 -166738698 - AluY SINE Alu -15 296 1 2293 102 3 7 chr6 22540856 22541161 -166738393 - AluSq SINE Alu -7 306 3 328 277 17 25 chr6 22541184 22541303 -166738251 - L1MC/D LINE L1 -2016 5792 5675 334 253 111 10 chr6 22541341 22541440 -166738114 - L1MC/D LINE L1 -2090 5718 5610 203 333 97 30 chr6 22541493 22541658 -166737896 + L2 LINE L2 2442 2617 -697 243 0 0 0 chr6 22542140 22542167 -166737387 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1091 169 0 0 chr6 22542279 22542456 -166737098 + AluJb SINE Alu 132 308 -4 712 139 0 26 chr6 22542566 22542681 -166736873 - FLAM_A SINE Alu -1 141 30 402 291 145 9 chr6 22543132 22543359 -166736195 + MIR SINE MIR 3 260 -2 315 327 90 41 chr6 22544582 22544848 -166734706 + L2 LINE L2 1908 2186 -1128 852 135 47 0 chr6 22544852 22545000 -166734554 - L1M4 LINE L1 -670 5514 5360 1470 159 31 38 chr6 22545005 22545294 -166734260 - AluJb SINE Alu -25 287 1 1207 200 4 36 chr6 22545317 22545592 -166733962 - L1M4 LINE L1 -1010 5136 4871 553 254 57 0 chr6 22545647 22545769 -166733785 - MER5A DNA MER1_type 0 189 61 657 148 148 25 chr6 22545770 22545892 -166733662 + FLAM_C SINE Alu 2 138 -5 352 197 15 0 chr6 22545896 22545962 -166733592 - MER5A DNA MER1_type -122 67 1 371 244 89 41 chr6 22545964 22546087 -166733467 - MER5B DNA MER1_type 0 178 50 744 62 0 0 chr6 22546088 22546184 -166733370 - AluY SINE Alu 0 311 216 243 263 0 0 chr6 22546190 22546247 -166733307 - MER5B DNA MER1_type -120 58 2 272 367 86 8 chr6 22546258 22546386 -166733168 - MER5B DNA MER1_type -2 176 39 2445 78 3 7 chr6 22546386 22546692 -166732862 + AluSq SINE Alu 2 306 -7 387 260 67 0 chr6 22547076 22547180 -166732374 - L1MC/D LINE L1 -2150 5658 5548 182 324 261 18 chr6 22547438 22547549 -166732005 + MIR SINE MIR 16 153 -55 220 338 0 50 chr6 22547790 22547870 -166731684 - L3 LINE CR1 -7 1570 1495 929 262 101 42 chr6 22547911 22548297 -166731257 - L2 LINE L2 -1 3312 2904 2386 255 144 31 chr6 22548343 22549138 -166730416 - L2 LINE L2 -15 3298 2594 2254 105 0 3 chr6 22549138 22549433 -166730121 - AluSg SINE Alu -16 294 1 2386 255 144 31 chr6 22549433 22549519 -166730035 - L2 LINE L2 -719 2594 2519 2186 114 0 3 chr6 22549519 22549816 -166729738 - AluSq SINE Alu -17 296 1 2386 255 144 31 chr6 22549816 22550106 -166729448 - L2 LINE L2 -794 2519 2011 307 159 261 0 chr6 22550109 22550197 -166729357 + MER103 DNA DNA 55 165 -1 1069 280 111 24 chr6 22550285 22550707 -166728847 - MLT1K LTR MaLR -4 584 126 2366 82 3 0 chr6 22550726 22551019 -166728535 - AluSp SINE Alu -18 295 2 451 241 57 14 chr6 22551455 22551596 -166727958 + MIR SINE MIR 89 235 -27 4741 174 94 25 chr6 22551654 22552793 -166726761 - L1MD1 LINE L1 -11 6625 5566 2286 112 0 3 chr6 22552793 22553098 -166726456 - AluSx SINE Alu -8 304 1 4741 174 94 25 chr6 22553098 22553376 -166726178 - L1MD1 LINE L1 -1070 5566 5309 2666 33 3 0 chr6 22553376 22553682 -166725872 + AluY SINE Alu 1 307 -4 4741 174 94 25 chr6 22553682 22553845 -166725709 - L1MD1 LINE L1 -1327 5309 4959 1652 218 183 16 chr6 22553842 22554026 -166725528 - L1MD1 LINE L1 -5942 598 446 * 282 29 0 0 chr6 22554026 22554061 -166725493 + (TG)n Simple_repeat Simple_repeat 2 36 0 1652 218 183 16 chr6 22554061 22554368 -166725186 - L1MD1 LINE L1 -6094 446 25 21 36 0 0 chr6 22554386 22554414 -166725140 + AT_rich Low_complexity Low_complexity 1 28 0 1937 135 21 0 chr6 22554499 22554781 -166724773 - AluSx SINE Alu -14 298 11 276 171 0 0 chr6 22554781 22554822 -166724732 - Alu SINE Alu -258 41 1 730 264 65 74 chr6 22554843 22555354 -166724200 - L1MC5 LINE L1 -186 7775 7270 2248 110 0 0 chr6 22555613 22555914 -166723640 - AluSx SINE Alu -11 301 1 1390 146 39 26 chr6 22556017 22556250 -166723304 - MER46A DNA MER2_type 0 236 1 1767 164 7 3 chr6 22557320 22557607 -166721947 + AluJb SINE Alu 9 296 -16 21 36 0 0 chr6 22557777 22557805 -166721749 + AT_rich Low_complexity Low_complexity 1 28 0 4322 214 64 48 chr6 22557934 22558641 -166720913 - L1MC4a LINE L1 0 7808 7114 2042 117 7 0 chr6 22558641 22558967 -166720587 - AluSx SINE Alu 0 328 1 4322 214 64 48 chr6 22558967 22559046 -166720508 - L1MC4a LINE L1 -694 7114 7038 2125 113 7 3 chr6 22559046 22559338 -166720216 - AluSx SINE Alu -19 293 1 4322 214 64 48 chr6 22559338 22559733 -166719821 - L1MC4a LINE L1 -770 7038 6606 254 298 124 50 chr6 22559803 22559921 -166719633 - MIR SINE MIR -18 244 109 2373 86 3 0 chr6 22559921 22560225 -166719329 - AluY SINE Alu -6 305 1 254 298 124 50 chr6 22560225 22560267 -166719287 - MIR SINE MIR -153 109 72 2403 70 0 10 chr6 22560431 22560730 -166718824 - AluY SINE Alu -15 296 1 182 33 67 0 chr6 22560941 22560971 -166718583 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 659 155 10 10 chr6 22560973 22561076 -166718478 - FLAM_A SINE Alu -27 115 13 1531 158 13 49 chr6 22561114 22561418 -166718136 + AluJb SINE Alu 1 293 -19 23 54 0 0 chr6 22561476 22561513 -166718041 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr6 22561718 22561755 -166717799 + AT_rich Low_complexity Low_complexity 1 37 0 2257 107 3 0 chr6 22562288 22562586 -166716968 + AluSx SINE Alu 1 299 -13 1848 156 0 3 chr6 22562683 22562972 -166716582 - AluSx SINE Alu -24 288 1 1431 139 10 0 chr6 22562976 22563178 -166716376 - AluSx SINE Alu -108 204 1 469 315 5 22 chr6 22563444 22563628 -166715926 - MARNA DNA Mariner -165 421 241 295 193 53 0 chr6 22563773 22563830 -166715724 + MARNA DNA Mariner 456 515 -71 2207 129 0 0 chr6 22564369 22564679 -166714875 - AluSg SINE Alu 0 310 1 2510 61 0 0 chr6 22564686 22564982 -166714572 - AluY SINE Alu -15 296 1 2044 136 0 0 chr6 22565143 22565437 -166714117 + AluSq SINE Alu 1 294 -19 2220 84 0 17 chr6 22565816 22566177 -166713377 + AluY SINE Alu 1 356 0 226 137 20 20 chr6 22566606 22566657 -166712897 + L1MCa LINE L1 2006 2056 -4370 2108 105 0 14 chr6 22566705 22567029 -166712525 + AluSx SINE Alu 1 320 0 747 94 0 0 chr6 22567892 22567988 -166711566 - AluJ/FLAM SINE Alu -215 97 2 22 35 0 0 chr6 22568788 22568817 -166710737 + AT_rich Low_complexity Low_complexity 1 29 0 2387 90 7 0 chr6 22570220 22570530 -166709024 + AluSx SINE Alu 1 312 0 378 266 252 7 chr6 22570561 22570700 -166708854 + MIR SINE MIR 37 209 -53 1917 135 38 10 chr6 22571528 22571817 -166707737 + AluSx SINE Alu 1 297 -15 696 201 0 15 chr6 22572573 22572707 -166706847 - FLAM_C SINE Alu -1 132 1 238 287 93 39 chr6 22573027 22573156 -166706398 + MIR SINE MIR 63 198 -64 579 219 0 0 chr6 22573203 22573308 -166706246 + FLAM_A SINE Alu 18 122 -20 23 0 0 0 chr6 22574200 22574223 -166705331 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 22575541 22575569 -166703985 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 22575916 22575944 -166703610 + AT_rich Low_complexity Low_complexity 1 28 0 555 104 0 0 chr6 22576240 22576317 -166703237 - MADE1 DNA Mariner -1 79 3 207 0 0 0 chr6 22576759 22576782 -166702772 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1786 155 0 37 chr6 22576788 22576941 -166702613 - AluJo SINE Alu -26 286 148 2301 64 0 7 chr6 22576941 22577236 -166702318 - AluY SINE Alu -17 294 2 1786 155 0 37 chr6 22577236 22577379 -166702175 - AluJo SINE Alu -164 148 1 2594 39 3 6 chr6 22577513 22577825 -166701729 + AluY SINE Alu 1 311 0 272 273 230 0 chr6 22577944 22578105 -166701449 + L2 LINE L2 3112 3309 -4 39 0 0 0 chr6 22579131 22579170 -166700384 + AT_rich Low_complexity Low_complexity 1 39 0 2188 96 14 0 chr6 22579170 22579462 -166700092 - AluSc SINE Alu -13 296 1 2047 123 0 0 chr6 22579468 22579744 -166699810 - AluSx SINE Alu -19 293 18 383 286 0 0 chr6 22580262 22580346 -166699208 + MIR3 SINE MIR 73 156 -52 22 35 0 0 chr6 22580643 22580672 -166698882 + AT_rich Low_complexity Low_complexity 1 29 0 204 40 0 0 chr6 22584502 22584527 -166695027 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr6 22585969 22585992 -166693562 + AT_rich Low_complexity Low_complexity 1 23 0 309 333 252 0 chr6 22586530 22586665 -166692889 + L2 LINE L2 3102 3270 -2 1161 207 61 52 chr6 22587231 22587560 -166691994 - L1ME2 LINE L1 0 6164 5833 201 238 175 0 chr6 22587685 22587748 -166691806 - MIR SINE MIR -6 256 183 1987 122 3 7 chr6 22588052 22588338 -166691216 - AluSx SINE Alu -26 286 2 686 267 62 50 chr6 22588532 22588772 -166690782 - MIR SINE MIR -7 255 13 2252 79 4 0 chr6 22589856 22590133 -166689421 - AluSp SINE Alu -19 294 17 22 56 0 0 chr6 22590565 22590601 -166688953 + AT_rich Low_complexity Low_complexity 1 36 0 224 290 0 0 chr6 22590918 22590980 -166688574 - MIR SINE MIR -1 261 200 29 0 0 0 chr6 22592970 22592999 -166686555 + AT_rich Low_complexity Low_complexity 1 29 0 2799 256 126 46 chr6 22593850 22594114 -166685440 + L2 LINE L2 1421 1662 -1652 2480 44 17 3 chr6 22594114 22594412 -166685142 - AluY SINE Alu -9 302 1 2799 256 126 46 chr6 22594412 22595371 -166684183 + L2 LINE L2 1662 2742 -572 778 153 68 62 chr6 22595372 22595414 -166684140 + MER3 DNA MER1_type 1 41 -121 2206 103 3 7 chr6 22595414 22595715 -166683839 + AluSx SINE Alu 1 300 -12 778 153 68 62 chr6 22595715 22595849 -166683705 + MER3 DNA MER1_type 41 131 -31 414 232 195 60 chr6 22595849 22596034 -166683520 + L2 LINE L2 2768 2977 -337 2336 101 0 0 chr6 22596039 22596347 -166683207 - AluSq SINE Alu -5 308 1 1867 157 0 0 chr6 22596511 22596814 -166682740 + AluJo SINE Alu 1 303 0 1691 170 3 7 chr6 22596874 22597181 -166682373 + AluJo SINE Alu 1 306 0 588 297 68 40 chr6 22598944 22599166 -166680388 + MIR SINE MIR 16 243 -19 295 310 109 22 chr6 22599209 22599393 -166680161 + MIR SINE MIR 48 247 -15 31633 102 13 58 chr6 22599412 22601529 -166678025 - L1PA7 LINE L1 0 6154 3942 2040 134 3 3 chr6 22601529 22601827 -166677727 - AluSg SINE Alu -12 298 1 31633 102 13 58 chr6 22601827 22606168 -166673386 - L1PA7 LINE L1 -2212 3942 2 2287 97 0 0 chr6 22606178 22606478 -166673076 - AluY SINE Alu -1 310 11 2097 142 0 0 chr6 22606479 22606775 -166672779 - AluSx SINE Alu -16 296 1 26 30 0 0 chr6 22607913 22607946 -166671608 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr6 22608066 22608100 -166671454 + AT_rich Low_complexity Low_complexity 1 34 0 237 65 0 0 chr6 22609818 22609849 -166669705 + (TA)n Simple_repeat Simple_repeat 2 32 0 269 347 95 7 chr6 22610747 22610894 -166668660 - MIR3 SINE MIR -3 205 46 508 347 23 12 chr6 22611074 22611318 -166668236 - MIR SINE MIR 0 262 14 180 375 50 19 chr6 22611723 22611883 -166667671 - L3 LINE CR1 -1410 167 3 1998 303 31 11 chr6 22612174 22612828 -166666726 + ERVL LTR ERVL 3230 3896 -1868 1449 82 0 0 chr6 22612829 22613013 -166666541 - AluSg/x SINE Alu -4 308 125 4651 277 34 12 chr6 22613014 22614377 -166665177 + ERVL LTR ERVL 3889 5281 -483 2039 234 96 12 chr6 22614379 22614960 -166664594 - L1MEc LINE L1 -5353 1043 414 1011 254 51 14 chr6 22614967 22615242 -166664312 - L1MEc LINE L1 -6030 366 82 406 309 56 5 chr6 22615927 22616128 -166663426 - MIR SINE MIR -13 249 33 2306 110 7 0 chr6 22616746 22617055 -166662499 - AluSx SINE Alu -1 311 1 563 168 42 18 chr6 22618277 22618444 -166661110 + CT-rich Low_complexity Low_complexity 4 174 0 2044 126 0 0 chr6 22618444 22618721 -166660833 - AluSx SINE Alu 0 312 36 5063 86 8 3 chr6 22618836 22619543 -166660011 - L1PA13 LINE L1 -2 6161 5451 217 244 0 0 chr6 22619681 22619726 -166659828 + CT-rich Low_complexity Low_complexity 2 46 0 517 158 24 0 chr6 22619954 22620036 -166659518 - FRAM/FAM SINE Alu -94 82 1 521 300 70 26 chr6 22620039 22620422 -166659132 - HAL1 LINE L1 -910 1597 1198 342 111 0 0 chr6 22620427 22620472 -166659082 - AluS SINE Alu -239 64 20 6306 132 24 7 chr6 22620676 22621907 -166657647 - L1MA4A LINE L1 -11 6292 5048 495 0 0 0 chr6 22622051 22622106 -166657448 + (CA)n Simple_repeat Simple_repeat 2 56 0 220 205 0 0 chr6 22622126 22622165 -166657389 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2285 125 0 0 chr6 22622323 22622635 -166656919 - AluSx SINE Alu 0 312 1 967 256 97 44 chr6 22622729 22623182 -166656372 - L1MC/D LINE L1 -2024 5784 5308 314 323 48 26 chr6 22623350 22623539 -166656015 - L1MA4A LINE L1 -1071 5075 4883 302 265 128 15 chr6 22623624 22623828 -166655726 - L1MC5 LINE L1 -48 7913 7687 9916 20 0 0 chr6 22623841 22625769 -166653785 - L1PA2 LINE L1 -2 6153 4226 1705 164 34 10 chr6 22625782 22625900 -166653654 + AluJb SINE Alu 1 115 -197 387 0 0 0 chr6 22625900 22625943 -166653611 + (CA)n Simple_repeat Simple_repeat 1 43 0 1705 164 34 10 chr6 22625943 22626116 -166653438 + AluJb SINE Alu 115 299 -13 6908 64 11 0 chr6 22626480 22627577 -166651977 - L1PA6 LINE L1 -4 6150 5051 1924 163 0 0 chr6 22627737 22628037 -166651517 - AluJb SINE Alu -10 302 3 1074 196 78 4 chr6 22628319 22628574 -166650980 + L1MA8 LINE L1 6016 6289 -2 604 311 58 0 chr6 22629437 22629653 -166649901 - MIR SINE MIR -12 250 19 1325 144 73 33 chr6 22629809 22630111 -166649443 - L1MC2 LINE L1 -11 7746 6138 4347 154 62 34 chr6 22630243 22631153 -166648401 - L1MC3 LINE L1 -331 7454 6520 255 276 41 87 chr6 22631222 22631418 -166648136 - HAL1b LINE L1 -610 738 552 308 29 0 0 chr6 22631752 22631787 -166647767 - U2 snRNA snRNA -153 35 1 202 184 53 0 chr6 22631910 22631948 -166647606 - MIR3 SINE MIR -46 162 123 777 255 100 4 chr6 22632821 22633052 -166646502 + MIR SINE MIR 6 258 -4 228 178 22 0 chr6 22635414 22635459 -166644095 + L2 LINE L2 3267 3312 -1 248 237 0 17 chr6 22635642 22635701 -166643853 - MLT1L LTR MaLR -12 603 546 373 284 49 66 chr6 22635767 22636010 -166643544 - MLT1J LTR MaLR -169 342 104 2241 251 31 33 chr6 22636535 22637386 -166642168 - L1M4 LINE L1 -1372 4774 3926 1930 195 21 12 chr6 22637928 22638553 -166641001 - L1MC4 LINE L1 -95 7713 7155 1960 123 3 48 chr6 22638914 22639224 -166640330 - AluSx SINE Alu -11 301 6 405 277 71 49 chr6 22639797 22639981 -166639573 + MIR SINE MIR 23 210 -52 309 327 75 28 chr6 22640384 22640598 -166638956 + L2 LINE L2 2302 2525 -789 239 264 33 22 chr6 22640957 22641048 -166638506 - L1ME4a LINE L1 -94 6027 5936 2163 186 50 0 chr6 22641124 22641521 -166638033 - MER47B DNA MER2_type 0 418 2 202 222 22 0 chr6 22641733 22641778 -166637776 + (TTCA)n Simple_repeat Simple_repeat 2 47 0 285 279 41 54 chr6 22641904 22642051 -166637503 - L2 LINE L2 -183 3089 2945 319 191 0 15 chr6 22642113 22642181 -166637373 - L1MB8 LINE L1 0 6178 6112 3937 173 36 8 chr6 22642188 22642962 -166636592 - L1MB8 LINE L1 -111 6067 5272 438 269 64 95 chr6 22643565 22643756 -166635798 - L2 LINE L2 -665 2649 2468 2355 103 3 0 chr6 22643756 22644066 -166635488 + AluSq SINE Alu 1 311 -2 438 269 64 95 chr6 22644066 22644157 -166635397 - L2 LINE L2 -846 2468 2376 1145 256 63 94 chr6 22644164 22644493 -166635061 + LTR33A LTR ERVL 1 339 -184 1246 132 66 31 chr6 22644493 22644721 -166634833 - MER46A DNA MER2_type 0 236 1 1145 256 63 94 chr6 22644721 22644781 -166634773 + LTR33A LTR ERVL 339 399 -124 1333 228 67 92 chr6 22644781 22645334 -166634220 - MER34 LTR ERV1 -3 539 1 1145 256 63 94 chr6 22645334 22645483 -166634071 + LTR33A LTR ERVL 399 523 0 362 271 207 55 chr6 22645483 22645816 -166633738 - L2 LINE L2 -941 2373 2092 2432 90 3 0 chr6 22645816 22646127 -166633427 + AluSx SINE Alu 1 312 0 362 271 207 55 chr6 22646127 22646339 -166633215 - L2 LINE L2 -1222 2092 1745 2278 93 3 0 chr6 22646341 22646642 -166632912 + AluSq SINE Alu 1 302 -11 21 0 0 0 chr6 22646701 22646722 -166632832 + AT_rich Low_complexity Low_complexity 1 21 0 1177 273 159 28 chr6 22646776 22647488 -166632066 - L1MC4a LINE L1 -1742 6066 5262 2094 91 0 69 chr6 22647673 22647992 -166631562 - AluSc SINE Alu -12 297 1 2327 92 0 0 chr6 22648721 22649024 -166630530 - AluSg SINE Alu -2 308 6 661 293 83 18 chr6 22649798 22650027 -166629527 + MIR SINE MIR 18 261 -1 436 303 82 50 chr6 22650571 22651146 -166628408 - L1MC4a LINE L1 -1802 6006 5414 392 316 114 0 chr6 22651167 22651395 -166628159 + L1MC/D LINE L1 4975 5228 -918 1030 281 37 51 chr6 22651457 22651892 -166627662 + L1MC/D LINE L1 5281 5709 -2099 301 136 22 6 chr6 22651892 22652006 -166627548 + Alu SINE Alu 239 328 0 22 0 0 0 chr6 22652435 22652457 -166627097 + AT_rich Low_complexity Low_complexity 1 22 0 1887 161 0 26 chr6 22652883 22653193 -166626361 - AluSx SINE Alu -10 302 1 39 0 0 0 chr6 22653196 22653235 -166626319 + AT_rich Low_complexity Low_complexity 1 39 0 371 266 80 26 chr6 22653250 22653363 -166626191 + L2 LINE L2 3193 3311 -2 2281 68 41 10 chr6 22653456 22653750 -166625804 + AluY SINE Alu 1 303 -8 5008 113 46 75 chr6 22653895 22654510 -166625044 - Tigger3b DNA MER2_type -1797 1231 599 2131 100 0 4 chr6 22654510 22654830 -166624724 + AluSc SINE Alu 1 319 0 5008 113 46 75 chr6 22654830 22655109 -166624445 - Tigger3b DNA MER2_type -2429 599 365 2338 108 0 0 chr6 22655109 22655415 -166624139 - AluSg SINE Alu -4 306 1 5008 113 46 75 chr6 22655415 22655505 -166624049 - Tigger3b DNA MER2_type -2663 365 274 592 194 0 0 chr6 22655503 22655601 -166623953 - Tigger3b DNA MER2_type -1129 102 5 * 2289 91 0 3 chr6 22655809 22656105 -166623449 - AluSq SINE Alu -18 295 1 391 268 0 31 chr6 22656235 22656332 -166623222 - L2 LINE L2 -3 3269 3176 331 210 37 105 chr6 22656791 22656953 -166622601 - L2 LINE L2 -577 2737 2587 1304 86 0 0 chr6 22656986 22657149 -166622405 + AluY SINE Alu 133 295 -16 2084 111 0 17 chr6 22657189 22657486 -166622068 - AluSg1 SINE Alu -15 294 3 11710 115 9 1 chr6 22658620 22661183 -166618371 - L1PA10 LINE L1 -2 6166 3581 232 280 129 11 chr6 22661864 22661957 -166617597 - L1ME3A LINE L1 -104 6066 5963 898 285 110 10 chr6 22662029 22662510 -166617044 - L1ME3A LINE L1 -222 5948 5420 2081 114 0 29 chr6 22662510 22662679 -166616875 - AluSx SINE Alu -10 302 144 2215 98 7 0 chr6 22662679 22662966 -166616588 - AluSc SINE Alu -15 294 6 2081 114 0 29 chr6 22662966 22663102 -166616452 - AluSx SINE Alu -168 144 6 1071 90 0 0 chr6 22663110 22663243 -166616311 - AluSq/x SINE Alu -179 133 1 1160 254 108 43 chr6 22663247 22664087 -166615467 - L1ME3A LINE L1 -769 5377 4529 2050 154 3 26 chr6 22664485 22664830 -166614724 + MER1B DNA MER1_type 1 337 0 642 255 56 68 chr6 22664995 22665246 -166614308 - MIR SINE MIR -14 248 1 194 368 47 0 chr6 22665251 22665357 -166614197 - L2 LINE L2 -999 2315 2205 1636 164 0 63 chr6 22667878 22668195 -166611359 - AluJb SINE Alu -15 297 1 28 0 0 0 chr6 22668198 22668226 -166611328 + AT_rich Low_complexity Low_complexity 1 28 0 387 307 14 61 chr6 22668658 22668870 -166610684 + L2 LINE L2 2205 2406 -908 250 314 95 9 chr6 22670116 22670221 -166609333 + L2 LINE L2 3200 3313 0 205 282 141 12 chr6 22671661 22671746 -166607808 + L2 LINE L2 3137 3232 -40 386 287 25 102 chr6 22672072 22672386 -166607168 - MLT1J LTR MaLR -196 315 26 1342 259 58 22 chr6 22674227 22674675 -166604879 - MER20B DNA MER1_type 0 783 320 575 215 56 28 chr6 22674694 22674838 -166604716 - MER6 DNA MER2_type -1 864 -4 * 743 266 39 0 chr6 22674838 22675038 -166604516 - MER20B DNA MER1_type -513 270 63 353 329 79 27 chr6 22675194 22675594 -166603960 + L1MC/D LINE L1 5307 5725 -532 397 353 111 0 chr6 22676270 22676423 -166603131 - L2 LINE L2 -1 3271 3102 483 205 6 121 chr6 22676556 22676722 -166602832 - MLT1L LTR MaLR -59 556 410 405 245 0 0 chr6 22676829 22676931 -166602623 - L1MC4 LINE L1 -7 8035 7934 194 174 22 0 chr6 22677130 22677176 -166602378 + CT-rich Low_complexity Low_complexity 2 48 0 944 201 0 0 chr6 22677383 22677552 -166602002 - FAM SINE Alu -2 173 5 4048 198 71 145 chr6 22677621 22679619 -166599935 - L1MC4a LINE L1 -1 7807 5959 535 151 122 22 chr6 22679627 22679766 -166599788 - L1MC4a LINE L1 -719 7089 6937 1566 258 78 13 chr6 22679804 22680409 -166599145 - L1MC4a LINE L1 -1852 5956 5313 245 272 76 0 chr6 22680647 22680739 -166598815 - L1MC4a LINE L1 -1131 5015 4917 879 218 0 0 chr6 22680797 22680962 -166598592 - FAM SINE Alu -9 166 2 247 273 67 13 chr6 22680970 22681120 -166598434 - L1MC4a LINE L1 -1226 4920 4763 305 43 43 0 chr6 22681185 22681231 -166598323 + (TCTCCC)n Simple_repeat Simple_repeat 1 48 0 805 185 11 0 chr6 22681231 22681409 -166598145 + CT-rich Low_complexity Low_complexity 1 180 0 1937 144 23 10 chr6 22681409 22681715 -166597839 - AluSx SINE Alu -2 310 1 2285 99 0 0 chr6 22681843 22682137 -166597417 - AluSx SINE Alu -18 294 1 26 0 0 0 chr6 22682139 22682165 -166597389 + AT_rich Low_complexity Low_complexity 1 26 0 1666 178 33 21 chr6 22682296 22682613 -166596941 + MER2 DNA MER2_type 1 324 -21 2282 117 19 27 chr6 22682613 22682980 -166596574 + THE1B LTR MaLR 1 364 0 1666 178 33 21 chr6 22682980 22682993 -166596561 + MER2 DNA MER2_type 324 335 -10 496 297 57 64 chr6 22683093 22683498 -166596056 - L1MC4a LINE L1 -1788 4358 3952 2546 134 45 14 chr6 22683498 22683944 -166595610 - L1MA5 LINE L1 0 6300 5841 496 297 57 64 chr6 22683944 22684529 -166595025 - L1MC4a LINE L1 -2194 3952 3375 6319 139 67 13 chr6 22684532 22685447 -166594107 + Tigger3b DNA MER2_type 1 994 -2034 2253 101 3 0 chr6 22685447 22685784 -166593770 + AluY SINE Alu 1 311 0 6319 139 67 13 chr6 22685784 22686036 -166593518 + Tigger3b DNA MER2_type 994 1231 0 607 250 199 56 chr6 22686085 22686131 -166593423 - L1MC4a LINE L1 -2974 3172 3134 2032 130 3 0 chr6 22686131 22686430 -166593124 - AluSx SINE Alu -12 300 1 607 250 199 56 chr6 22686430 22686484 -166593070 - L1MC4a LINE L1 -3012 3134 3089 1960 134 10 0 chr6 22686484 22686775 -166592779 - AluSq SINE Alu -18 295 2 607 250 199 56 chr6 22686775 22687121 -166592433 - L1MC4a LINE L1 -3057 3089 2661 796 154 44 34 chr6 22687565 22687763 -166591791 + MER6 DNA MER2_type -65 865 0 31 0 0 0 chr6 22687805 22687836 -166591718 + AT_rich Low_complexity Low_complexity 1 31 0 1457 178 6 60 chr6 22687961 22688275 -166591279 - AluJo SINE Alu -13 299 3 528 302 118 30 chr6 22688513 22688986 -166590568 - HAL1b LINE L1 -597 751 237 26 30 0 0 chr6 22689011 22689044 -166590510 + AT_rich Low_complexity Low_complexity 1 33 0 1968 151 3 7 chr6 22689121 22689425 -166590129 - AluSx SINE Alu -7 305 3 23 33 0 0 chr6 22689440 22689470 -166590084 + AT_rich Low_complexity Low_complexity 1 30 0 202 118 0 29 chr6 22689539 22689573 -166589981 + L3b LINE CR1 1369 1401 -182 182 262 49 16 chr6 22690492 22690553 -166589001 - L2 LINE L2 -13 3300 3238 272 301 27 33 chr6 22690585 22690768 -166588786 + LTR41 LTR ERVL 1 182 -591 2007 175 11 11 chr6 22690877 22691242 -166588312 - MLT1A1 LTR MaLR 0 365 1 1896 141 171 11 chr6 22691393 22691762 -166587792 - MSTA LTR MaLR 0 428 1 182 353 29 0 chr6 22691822 22691890 -166587664 + L2 LINE L2 3095 3164 -108 1026 170 12 0 chr6 22692013 22692184 -166587370 - FAM SINE Alu 0 175 3 258 328 67 37 chr6 22692230 22692364 -166587190 - MIR3 SINE MIR -49 159 22 5869 185 34 82 chr6 22692603 22693220 -166586334 - L1MC1 LINE L1 0 6613 5968 2131 132 0 0 chr6 22693220 22693516 -166586038 + AluSx SINE Alu 1 296 -16 5869 185 34 82 chr6 22693516 22694777 -166584777 - L1MC1 LINE L1 -645 5968 4647 852 233 0 12 chr6 22694777 22694949 -166584605 - AluJo SINE Alu -142 170 1 5869 185 34 82 chr6 22694949 22695282 -166584272 - L1MC1 LINE L1 -1966 4647 4299 3249 112 85 0 chr6 22695282 22695765 -166583789 + MER1A DNA MER1_type 4 527 0 5869 185 34 82 chr6 22695765 22696510 -166583044 - L1MC1 LINE L1 -2314 4299 3651 * 8161 169 83 34 chr6 22696507 22696602 -166582952 - L1MC1 LINE L1 -4458 1968 1879 1561 169 67 0 chr6 22696602 22696886 -166582668 - AluJb SINE Alu -9 303 1 8161 169 83 34 chr6 22696886 22698649 -166580905 - L1MC1 LINE L1 -4547 1879 20 369 295 48 80 chr6 22699253 22699731 -166579823 - L1ME LINE L1 -299 5822 5360 311 195 27 60 chr6 22700900 22701049 -166578505 + Charlie7 DNA MER1_type 2429 2572 -40 2494 67 0 13 chr6 22701905 22702218 -166577336 + AluY SINE Alu 1 309 -2 1252 147 0 206 chr6 22702936 22703103 -166576451 - AluSx SINE Alu -15 297 97 453 36 0 0 chr6 22703103 22703158 -166576396 + (TG)n Simple_repeat Simple_repeat 2 56 0 1252 147 0 206 chr6 22703158 22703234 -166576320 - AluSx SINE Alu -215 97 154 339 25 0 0 chr6 22703234 22703274 -166576280 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1252 147 0 206 chr6 22703274 22703403 -166576151 - AluSx SINE Alu -157 155 1 1568 182 173 3 chr6 22703787 22704156 -166575398 + MSTB1 LTR MaLR 1 432 0 1308 156 3 67 chr6 22704798 22705081 -166574473 - L1MB3 LINE L1 0 6183 5919 24 53 0 0 chr6 22705667 22705705 -166573849 + AT_rich Low_complexity Low_complexity 1 38 0 2050 192 63 11 chr6 22707298 22707756 -166571798 - L1MC3 LINE L1 -15 7770 7289 1365 92 0 0 chr6 22709268 22709442 -166570112 + AluSp SINE Alu 136 309 -4 459 256 139 37 chr6 22710352 22710567 -166568987 + MER102a DNA MER1_type 93 329 -1 4047 124 50 32 chr6 22711184 22711940 -166567614 - LTR1 LTR ERV1 0 785 16 185 348 0 14 chr6 22711975 22712044 -166567510 + L2 LINE L2 417 484 -2830 1042 242 0 5 chr6 22712258 22712481 -166567073 + MER58A DNA MER1_type 3 224 0 313 258 161 0 chr6 22713094 22713218 -166566336 - L2 LINE L2 -5 3308 3165 1091 279 141 18 chr6 22713249 22713640 -166565914 - L2 LINE L2 -42 3271 2833 253 268 0 0 chr6 22716612 22716668 -166562886 + MER94 DNA DNA 3 58 -76 274 241 0 0 chr6 22716811 22716869 -166562685 + L2 LINE L2 3256 3313 0 454 278 56 0 chr6 22718066 22718192 -166561362 + L2 LINE L2 3161 3293 -20 1043 159 169 0 chr6 22718376 22718577 -166560977 + MER46A DNA MER2_type 2 236 0 414 284 66 27 chr6 22718629 22718812 -166560742 - MLT1L LTR MaLR -2 613 424 1629 151 0 0 chr6 22719374 22719619 -166559935 + Tigger3(Golem) DNA MER2_type 2784 3028 -1 213 386 105 18 chr6 22719919 22720033 -166559521 + MIR SINE MIR 20 143 -65 542 333 122 17 chr6 22720636 22721054 -166558500 - MLT1L LTR MaLR -6 609 148 239 324 0 14 chr6 22721353 22721424 -166558130 - L2 LINE L2 -218 3054 2985 270 167 0 0 chr6 22721565 22721625 -166557929 + A-rich Low_complexity Low_complexity 4 63 0 2093 104 14 3 chr6 22721713 22722000 -166557554 - AluSg SINE Alu -20 290 1 38 0 0 0 chr6 22723322 22723360 -166556194 + AT_rich Low_complexity Low_complexity 1 38 0 1469 159 0 4 chr6 22723439 22723665 -166555889 - AluJo SINE Alu -2 310 86 2951 200 52 42 chr6 22723993 22724809 -166554745 - L1MA9 LINE L1 -25 6287 5464 21 36 0 0 chr6 22724822 22724850 -166554704 + AT_rich Low_complexity Low_complexity 1 28 0 403 345 87 31 chr6 22725132 22725454 -166554100 - L2 LINE L2 -7 3306 2967 2148 256 119 62 chr6 22725472 22726683 -166552871 - L2 LINE L2 -690 2624 1345 27 0 0 0 chr6 22726684 22726711 -166552843 + AT_rich Low_complexity Low_complexity 1 27 0 28 29 0 0 chr6 22727862 22727897 -166551657 + AT_rich Low_complexity Low_complexity 1 35 0 414 342 58 21 chr6 22727996 22728186 -166551368 - MIR3 SINE MIR -9 199 3 25 51 0 0 chr6 22728653 22728692 -166550862 + AT_rich Low_complexity Low_complexity 1 39 0 251 265 49 68 chr6 22728737 22728899 -166550655 - L1ME3A LINE L1 -50 6120 5962 366 211 38 45 chr6 22728987 22729120 -166550434 - L1MC5 LINE L1 -431 7530 7399 3123 149 108 68 chr6 22729342 22729594 -166549960 - L1MA4A LINE L1 -24 6279 6039 1789 125 34 0 chr6 22729594 22729858 -166549696 - AluSq SINE Alu -40 273 1 3123 149 108 68 chr6 22729858 22730022 -166549532 - L1MA4A LINE L1 -264 6039 5883 3329 63 0 0 chr6 22730022 22730448 -166549106 - L1PA5 LINE L1 0 6154 5729 3123 149 108 68 chr6 22730448 22730786 -166548768 - L1MA4A LINE L1 -420 5883 5493 2352 112 0 0 chr6 22730786 22731091 -166548463 - AluSg SINE Alu -5 305 1 425 245 159 0 chr6 22731634 22731785 -166547769 + LTR28 LTR ERV1 4 178 -842 370 198 12 0 chr6 22731801 22731882 -166547672 + LTR1 LTR ERV1 109 190 -595 * 2020 178 137 24 chr6 22731851 22732311 -166547243 + LTR28 LTR ERV1 308 819 -201 1657 177 38 0 chr6 22732310 22732626 -166546928 + LTR28 LTR ERV1 693 1020 0 * 1989 145 0 16 chr6 22732994 22733298 -166546256 - AluSx SINE Alu -13 299 1 1213 201 76 8 chr6 22733495 22733778 -166545776 + AluSx SINE Alu 1 301 0 2364 101 3 0 chr6 22734563 22734871 -166544683 + AluSp SINE Alu 1 309 -4 1798 186 58 41 chr6 22734878 22735593 -166543961 + MER4E LTR ERV1 1 779 0 3683 150 46 11 chr6 22735660 22736308 -166543246 - LTR51 LTR ERV1 0 671 1 579 246 83 76 chr6 22736308 22736856 -166542698 - MER34C LTR ERV1 -6 536 2 399 333 0 0 chr6 22737684 22737792 -166541762 + MIR3 SINE MIR 87 194 -14 216 135 0 0 chr6 22737907 22737944 -166541610 + (T)n Simple_repeat Simple_repeat 1 37 0 337 269 13 0 chr6 22738078 22738156 -166541398 + L3 LINE CR1 1426 1504 -73 939 233 83 0 chr6 22738621 22738849 -166540705 - MIR SINE MIR -14 248 2 245 330 20 30 chr6 22738952 22739052 -166540502 - L2 LINE L2 -32 3281 3183 1340 167 84 43 chr6 22739098 22739397 -166540157 + AluSx SINE Alu 1 311 -1 475 97 29 29 chr6 22739444 22739547 -166540007 + GA-rich Low_complexity Low_complexity 2 104 0 1248 293 101 38 chr6 22739547 22739623 -166539931 - L2 LINE L2 -124 3189 3119 2383 98 3 0 chr6 22739623 22739929 -166539625 + AluSx SINE Alu 1 307 -5 1248 293 101 38 chr6 22739929 22740588 -166538966 - L2 LINE L2 -194 3119 2403 25 31 0 0 chr6 22741085 22741117 -166538437 + AT_rich Low_complexity Low_complexity 1 32 0 882 196 0 0 chr6 22741117 22741270 -166538284 - FRAM SINE Alu -13 153 1 186 189 0 0 chr6 22741286 22741323 -166538231 + T-rich Low_complexity Low_complexity 1 37 0 2080 124 3 34 chr6 22741325 22741647 -166537907 - AluSx SINE Alu 0 312 1 1352 152 16 4 chr6 22742471 22742714 -166536840 - MER101 LTR ERV1 0 474 229 403 315 11 67 chr6 22742746 22742924 -166536630 + MIR3 SINE MIR 36 203 -5 2282 128 0 0 chr6 22742927 22743239 -166536315 + AluSx SINE Alu 1 312 0 24 32 0 0 chr6 22743384 22743415 -166536139 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 22743770 22743800 -166535754 + AT_rich Low_complexity Low_complexity 1 30 0 456 168 11 42 chr6 22743827 22743922 -166535632 - AluJ/FLAM SINE Alu -215 97 6 2250 105 7 7 chr6 22743924 22744230 -166535324 - AluSx SINE Alu -6 306 1 420 57 0 71 chr6 22744252 22744305 -166535249 - L1PA16 LINE L1 -9 6157 6109 2171 120 62 11 chr6 22744305 22744662 -166534892 - THE1C LTR MaLR 0 375 1 420 57 0 71 chr6 22744662 22744678 -166534876 - L1PA16 LINE L1 -57 6109 6093 904 181 62 14 chr6 22745220 22745430 -166534124 + MER58A DNA MER1_type 4 223 -1 2313 71 0 7 chr6 22745549 22745846 -166533708 + AluY SINE Alu 1 295 -16 1977 133 0 32 chr6 22747546 22747855 -166531699 - AluJo SINE Alu -9 303 5 287 299 13 0 chr6 22749269 22749346 -166530208 + L2 LINE L2 3235 3312 -1 5588 121 9 4 chr6 22750379 22751355 -166528199 - L1PA14 LINE L1 0 6161 5170 21 57 0 0 chr6 22751737 22751772 -166527782 + AT_rich Low_complexity Low_complexity 1 35 0 414 215 0 139 chr6 22753421 22753565 -166525989 - L2 LINE L2 0 3313 3190 341 227 0 0 chr6 22754680 22754746 -166524808 + MIR SINE MIR 3 68 -194 885 128 47 14 chr6 22754757 22754905 -166524649 + MER30 DNA MER1_type 78 230 0 4432 160 44 28 chr6 22755804 22757105 -166522449 - L1MA9 LINE L1 -38 6274 4953 738 220 28 0 chr6 22757093 22757270 -166522284 + L1 LINE L1 4576 4757 -1389 * 1265 173 42 137 chr6 22757275 22757386 -166522168 + AluJo SINE Alu 9 129 -183 228 111 0 0 chr6 22757386 22757422 -166522132 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1265 173 42 137 chr6 22757422 22757646 -166521908 + AluJo SINE Alu 129 312 0 855 112 25 87 chr6 22757653 22757849 -166521705 + L1 LINE L1 4747 4930 -1216 372 164 0 0 chr6 22758005 22758072 -166521482 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 297 280 60 99 chr6 22758266 22758498 -166521056 + L2 LINE L2 2738 2960 -354 2446 90 0 0 chr6 22758596 22758907 -166520647 - AluY SINE Alu 0 311 1 913 158 0 20 chr6 22758920 22759066 -166520488 - FLAM_C SINE Alu 0 143 1 183 317 59 0 chr6 22759077 22759178 -166520376 + L2 LINE L2 3119 3225 -88 349 206 14 0 chr6 22759179 22759252 -166520302 - AluJo SINE Alu -6 296 223 857 139 42 7 chr6 22759252 22759396 -166520158 - AluJo SINE Alu -128 184 36 314 258 65 0 chr6 22759396 22759489 -166520065 + L2 LINE L2 3215 3313 0 322 297 11 97 chr6 22759690 22759742 -166519812 + MIR SINE MIR 103 158 -104 2386 79 33 0 chr6 22759742 22760045 -166519509 + AluSq SINE Alu 1 313 0 322 297 11 97 chr6 22760045 22760167 -166519387 + MIR SINE MIR 158 262 0 255 235 0 0 chr6 22760343 22760394 -166519160 - MLT1B LTR MaLR 0 390 340 717 194 167 6 chr6 22760414 22760594 -166518960 - MER3 DNA MER1_type 0 209 1 186 143 0 0 chr6 22761546 22761581 -166517973 + (CA)n Simple_repeat Simple_repeat 1 35 0 1395 198 128 12 chr6 22761589 22762019 -166517535 - L1MC4 LINE L1 0 8042 7563 3577 179 64 34 chr6 22762059 22762394 -166517160 - L1MB7 LINE L1 -7 6177 5854 1540 174 92 0 chr6 22762394 22762710 -166516844 + MER7A DNA MER2_type 4 346 0 3577 179 64 34 chr6 22762710 22763014 -166516540 - L1MB7 LINE L1 -330 5854 5561 312 27 0 0 chr6 22763014 22763051 -166516503 + (TG)n Simple_repeat Simple_repeat 2 38 0 1731 183 0 11 chr6 22763058 22763343 -166516211 - AluJo SINE Alu -30 282 1 3577 179 64 34 chr6 22763343 22763399 -166516155 - L1MB7 LINE L1 -628 5556 5503 832 168 69 0 chr6 22763399 22763572 -166515982 - L1MB3 LINE L1 0 6183 5999 3577 179 64 34 chr6 22763572 22763997 -166515557 - L1MB7 LINE L1 -681 5503 5018 202 367 102 49 chr6 22764206 22765582 -166513972 + L2 LINE L2 589 2037 -1277 1220 39 0 7 chr6 22765865 22766020 -166513534 + (TTCC)n Simple_repeat Simple_repeat 3 156 0 1862 139 7 11 chr6 22766022 22766295 -166513259 - AluSx SINE Alu -40 272 1 193 329 0 29 chr6 22767138 22767208 -166512346 + L2 LINE L2 3226 3293 -20 537 241 167 0 chr6 22767922 22767953 -166511601 + AluJo SINE Alu 9 33 -279 225 94 0 0 chr6 22767953 22767985 -166511569 + (CTGGGG)n Simple_repeat Simple_repeat 3 34 0 537 241 167 0 chr6 22767985 22768115 -166511439 + AluJo SINE Alu 33 197 -115 2425 85 7 0 chr6 22818683 22819011 -166460543 - AluSc SINE Alu 0 330 1 1227 231 21 3 chr6 22819564 22819846 -166459708 - MLT1A1 LTR MaLR 0 365 79 243 217 69 74 chr6 22820268 22820443 -166459111 + L1ME4a LINE L1 5932 6105 -16 30 93 0 0 chr6 22820454 22820540 -166459014 + AT_rich Low_complexity Low_complexity 1 86 0 27 62 0 37 chr6 22821356 22821437 -166458117 + AT_rich Low_complexity Low_complexity 1 78 0 232 382 24 16 chr6 22821502 22821625 -166457929 - MIR3 SINE MIR -13 195 72 2229 86 10 7 chr6 22821673 22821976 -166457578 - AluSc SINE Alu -5 304 1 2225 113 3 7 chr6 22822252 22822562 -166456992 + AluSq SINE Alu 1 309 -4 2207 221 76 39 chr6 22823161 22823865 -166455689 - L1MC4 LINE L1 -5 8037 5612 1199 196 93 36 chr6 22823867 22824199 -166455355 + MLT2D LTR ERVL 1 351 -63 229 114 0 0 chr6 22824253 22824288 -166455266 + MLT2D LTR ERVL 363 397 0 247 229 0 0 chr6 22824288 22824336 -166455218 + L1M4 LINE L1 4062 4109 -2037 663 233 68 79 chr6 22824911 22825203 -166454351 - L2 LINE L2 0 3313 3025 2273 91 0 3 chr6 22825228 22825526 -166454028 - AluY SINE Alu -14 297 1 1626 184 0 34 chr6 22825531 22825825 -166453729 - AluJo SINE Alu -20 292 9 1586 92 61 0 chr6 22826133 22826361 -166453193 - L1PB1 LINE L1 -1 6150 5909 816 209 0 0 chr6 22826396 22826554 -166453000 + MLT1A1 LTR MaLR 1 158 -207 1080 165 0 12 chr6 22826554 22826724 -166452830 + AluSc SINE Alu 112 279 -30 980 184 32 37 chr6 22826730 22826948 -166452606 + MLT1A1 LTR MaLR 144 360 -5 1464 78 289 14 chr6 22827994 22828278 -166451276 - L1PA8 LINE L1 0 6172 5811 463 304 100 33 chr6 22828319 22828589 -166450965 + LTR67 LTR ERVL 3 290 -267 230 268 14 14 chr6 22828699 22828770 -166450784 + LTR67 LTR ERVL 471 541 -16 2126 108 10 3 chr6 22829762 22830059 -166449495 + AluSc SINE Alu 1 299 -10 184 327 18 0 chr6 22830063 22830118 -166449436 - MIR SINE MIR -71 137 82 356 294 64 0 chr6 22831427 22831536 -166448018 - MIR SINE MIR -59 149 34 613 164 36 79 chr6 22831738 22831815 -166447739 + MER33 DNA MER1_type 1 69 -2516 2364 70 10 13 chr6 22831815 22832117 -166447437 - AluY SINE Alu -10 301 1 613 164 36 79 chr6 22832117 22832204 -166447350 + MER33 DNA MER1_type 69 158 -166 605 202 147 16 chr6 22832224 22832353 -166447201 + FRAM SINE Alu 1 146 -30 628 170 65 0 chr6 22832372 22832525 -166447029 + MER33 DNA MER1_type 201 363 0 23 78 0 0 chr6 22832724 22832775 -166446779 + AT_rich Low_complexity Low_complexity 1 51 0 428 225 21 99 chr6 22833700 22833891 -166445663 + L2 LINE L2 3138 3313 0 2293 218 63 18 chr6 22834487 22835172 -166444382 + L1MC4a LINE L1 6646 7361 -447 2012 102 11 14 chr6 22835298 22835583 -166443971 + AluSx SINE Alu 6 289 -23 461 228 59 0 chr6 22835595 22835696 -166443858 - MIR SINE MIR -74 188 82 492 229 0 8 chr6 22836997 22837119 -166442435 - L1ME3A LINE L1 -2 6168 6048 2266 76 0 27 chr6 22837126 22837427 -166442127 + AluY SINE Alu 1 293 -18 1771 151 4 0 chr6 22837501 22837766 -166441788 - AluSx SINE Alu -2 310 45 1002 278 188 16 chr6 22837903 22838046 -166441508 - L2 LINE L2 -571 2743 2626 432 0 0 0 chr6 22838046 22838094 -166441460 + (CA)n Simple_repeat Simple_repeat 1 48 0 1002 278 188 16 chr6 22838094 22838450 -166441104 - L2 LINE L2 -688 2626 2158 10506 160 31 35 chr6 22839540 22839989 -166439565 + L1M4c LINE L1 16 466 -5918 894 138 0 8 chr6 22839989 22840119 -166439435 + FLAM_C SINE Alu 1 129 -4 10506 160 31 35 chr6 22840119 22840243 -166439311 + L1M4c LINE L1 466 589 -5795 2396 98 3 0 chr6 22840243 22840550 -166439004 + AluSp SINE Alu 1 308 -5 10506 160 31 35 chr6 22840550 22842185 -166437369 + L1M4c LINE L1 589 2215 -4169 561 116 12 0 chr6 22842187 22842273 -166437281 - Tigger5 DNA MER2_type 0 2323 2237 229 184 0 0 chr6 22842283 22842321 -166437233 - Tigger5 DNA MER2_type -2268 55 18 311 203 29 14 chr6 22842328 22842397 -166437157 - Tigger5 DNA MER2_type -6 2317 2248 675 100 157 21 chr6 22842417 22842557 -166436997 + L1M4c LINE L1 2216 2374 -4010 1038 202 6 65 chr6 22842583 22842958 -166436596 + L1MB3 LINE L1 5820 6141 -42 1440 133 24 0 chr6 22842958 22843168 -166436386 + AluJb SINE Alu 83 297 -15 954 247 77 30 chr6 22843323 22843881 -166435673 - MLT2E LTR ERVL 0 628 1 31 58 0 0 chr6 22844289 22844341 -166435213 + AT_rich Low_complexity Low_complexity 1 52 0 315 192 103 0 chr6 22844581 22844659 -166434895 + MER53 DNA DNA 103 188 -1 1802 194 75 20 chr6 22844838 22845281 -166434273 + MLT1C LTR MaLR 1 467 0 356 325 105 53 chr6 22845293 22845521 -166434033 - MIR SINE MIR -2 260 21 266 57 0 0 chr6 22847261 22847296 -166432258 - MLT2C1 LTR ERVL 0 397 363 387 0 0 0 chr6 22847313 22847356 -166432198 + (CA)n Simple_repeat Simple_repeat 2 44 0 1291 186 137 25 chr6 22847356 22847678 -166431876 - MLT1E LTR MaLR -30 563 206 418 234 0 82 chr6 22847901 22848059 -166431495 + AluSg SINE Alu 9 153 -157 848 153 0 0 chr6 22849148 22849279 -166430275 - FLAM_C SINE Alu -2 131 1 3655 149 26 17 chr6 22849298 22849789 -166429765 + Tigger1 DNA MER2_type 1 501 -1917 1658 181 7 3 chr6 22849789 22850076 -166429478 + AluJb SINE Alu 1 288 -24 3655 149 26 17 chr6 22850076 22850274 -166429280 + Tigger1 DNA MER2_type 501 696 -1722 898 206 0 0 chr6 22850275 22850430 -166429124 + AluJb SINE Alu 134 288 -24 3481 99 23 2 chr6 22850430 22850954 -166428600 + Tigger1 DNA MER2_type 492 1026 -1392 2758 137 44 16 chr6 22850933 22851436 -166428118 + Tigger1 DNA MER2_type 1859 2375 -43 * 312 133 0 0 chr6 22852938 22852998 -166426556 + (TA)n Simple_repeat Simple_repeat 1 60 0 286 365 52 0 chr6 22854588 22854703 -166424851 - MIR3 SINE MIR -36 172 52 775 181 0 15 chr6 22854756 22854889 -166424665 - FLAM_C SINE Alu 0 133 3 21 0 0 0 chr6 22856312 22856333 -166423221 + AT_rich Low_complexity Low_complexity 1 21 0 616 277 38 50 chr6 22856714 22856805 -166422749 - MIR SINE MIR -26 236 145 2370 74 0 7 chr6 22856805 22857101 -166422453 - AluSc SINE Alu -15 294 1 616 277 38 50 chr6 22857101 22857247 -166422307 - MIR SINE MIR -117 145 2 248 255 117 32 chr6 22857767 22857861 -166421693 - L2 LINE L2 -1 3271 3170 195 289 214 38 chr6 22858352 22858511 -166421043 + MER5A DNA MER1_type 2 188 -1 243 283 183 52 chr6 22858910 22859101 -166420453 - MIR SINE MIR 0 262 47 1711 154 7 20 chr6 22860626 22860924 -166418630 + AluJb SINE Alu 6 299 -13 2102 123 14 0 chr6 22860958 22861251 -166418303 - AluSg SINE Alu -13 297 1 2014 151 0 3 chr6 22861489 22861787 -166417767 - AluSx SINE Alu -15 297 1 609 170 0 0 chr6 22861809 22861909 -166417645 - FLAM_C SINE Alu -25 118 19 2878 0 0 0 chr6 22862299 22862607 -166416947 - AluYa5 SINE Alu -3 308 1 413 315 21 13 chr6 22863055 22863134 -166416420 - L1MC4a LINE L1 -1 7807 7730 1929 151 13 10 chr6 22863134 22863445 -166416109 - AluJb SINE Alu 0 312 1 413 315 21 13 chr6 22863445 22863603 -166415951 - L1MC4a LINE L1 -78 7730 7568 378 325 8 8 chr6 22863945 22864071 -166415483 + MER5A DNA MER1_type 36 161 -28 360 164 0 0 chr6 22865010 22865077 -166414477 + (CA)n Simple_repeat Simple_repeat 2 68 0 338 269 17 42 chr6 22865558 22865677 -166413877 - L1MCa LINE L1 -4859 1681 1566 297 75 0 0 chr6 22865679 22865719 -166413835 + (A)n Simple_repeat Simple_repeat 1 40 0 266 215 93 19 chr6 22865731 22865838 -166413716 - L1MCa LINE L1 -4853 1687 1573 504 232 57 23 chr6 22865959 22866136 -166413418 - L1MCa LINE L1 -5354 1367 1185 463 229 101 9 chr6 22866166 22866275 -166413279 + FLAM_A SINE Alu 1 119 -14 880 296 52 16 chr6 22866313 22866698 -166412856 - L1MCa LINE L1 -5962 759 361 2081 106 14 0 chr6 22866712 22866995 -166412559 - AluSx SINE Alu -25 287 1 282 56 0 0 chr6 22867411 22867447 -166412107 + (CA)n Simple_repeat Simple_repeat 1 36 0 1289 163 9 13 chr6 22867533 22867766 -166411788 + MER46A DNA MER2_type 5 236 0 597 293 95 36 chr6 22868574 22868796 -166410758 + L2 LINE L2 2857 3091 -222 380 224 0 0 chr6 22868804 22868880 -166410674 - AluJ/FLAM SINE Alu -226 76 1 239 162 0 0 chr6 22868889 22868926 -166410628 + Tigger5 DNA MER2_type 2264 2300 -23 484 273 163 29 chr6 22868931 22868944 -166410610 + L2 LINE L2 3073 3083 -230 2301 86 10 3 chr6 22868944 22869246 -166410308 - AluSp SINE Alu -9 304 1 484 273 163 29 chr6 22869246 22869441 -166410113 + L2 LINE L2 3083 3309 -4 261 0 0 0 chr6 22869442 22869471 -166410083 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 2367 98 10 65 chr6 22869576 22869658 -166409896 - MER47A DNA MER2_type -1957 366 281 2039 170 0 0 chr6 22869658 22869970 -166409584 + AluJb SINE Alu 1 312 0 2367 98 10 65 chr6 22869970 22870274 -166409280 - MER47A DNA MER2_type -2042 281 1 1841 173 3 13 chr6 22870360 22870667 -166408887 - AluJo SINE Alu -8 304 1 243 215 0 0 chr6 22871762 22871827 -166407727 + (TG)n Simple_repeat Simple_repeat 2 66 0 284 353 127 46 chr6 22871913 22872151 -166407403 - L2 LINE L2 -4 3268 2996 1816 160 21 0 chr6 22872151 22872433 -166407121 - AluSx SINE Alu -24 288 1 284 353 127 46 chr6 22872433 22872517 -166407037 - L2 LINE L2 -276 2996 2920 1792 77 5 0 chr6 22872552 22872772 -166406782 - AluSp SINE Alu -91 222 2 2160 112 10 16 chr6 22873033 22873347 -166406207 + AluSx SINE Alu 1 312 0 2656 55 0 0 chr6 22874296 22874607 -166404947 - AluY SINE Alu 0 311 1 23 0 0 0 chr6 22875748 22875771 -166403783 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 22876712 22876734 -166402820 + AT_rich Low_complexity Low_complexity 1 22 0 333 253 11 0 chr6 22878457 22878548 -166401006 + MER65A LTR ERV1 341 432 -13 198 0 0 0 chr6 22879358 22879380 -166400174 + (A)n Simple_repeat Simple_repeat 1 22 0 2202 120 7 0 chr6 22880040 22880339 -166399215 + AluSx SINE Alu 3 303 -9 203 278 0 83 chr6 22881418 22881490 -166398064 + L2 LINE L2 3202 3267 -5 257 209 124 48 chr6 22882363 22882468 -166397086 - MIR SINE MIR -13 249 137 910 152 93 0 chr6 22882480 22882631 -166396923 - FAM SINE Alu -10 165 1 200 293 108 95 chr6 22882764 22882996 -166396558 + L2 LINE L2 3032 3266 -6 3006 121 4 22 chr6 22883475 22883836 -166395718 + L1PA13 LINE L1 5678 6029 -134 2577 68 0 0 chr6 22883836 22884147 -166395407 + AluY SINE Alu 1 311 0 3006 121 4 22 chr6 22884147 22884273 -166395281 + L1PA13 LINE L1 6029 6156 -7 5374 100 36 8 chr6 22886295 22887158 -166392396 + L1PA13 LINE L1 5276 6162 -1 1421 201 32 18 chr6 22887379 22887657 -166391897 + AluJo SINE Alu 1 282 -30 255 125 0 0 chr6 22887663 22887703 -166391851 + (GGGGA)n Simple_repeat Simple_repeat 5 44 0 263 246 82 0 chr6 22887705 22887766 -166391788 + AluJ/FRAM SINE Alu 217 282 -20 234 0 0 0 chr6 22887768 22887794 -166391760 + (GGGGA)n Simple_repeat Simple_repeat 4 29 0 1337 202 48 10 chr6 22889288 22889661 -166389893 - MLT1C LTR MaLR 0 467 1 3789 214 113 44 chr6 22889661 22890505 -166389049 - L1M4c LINE L1 -4098 2548 1764 1947 174 0 0 chr6 22890505 22890809 -166388745 - AluJb SINE Alu -8 304 1 3789 214 113 44 chr6 22890809 22891442 -166388112 - L1M4c LINE L1 -4882 1764 969 2367 143 28 23 chr6 22891467 22891894 -166387660 - Tigger2a DNA MER2_type -5 429 1 3713 227 15 40 chr6 22891894 22892843 -166386711 - L1M4c LINE L1 -5610 932 8 2131 109 3 3 chr6 22893182 22893499 -166386055 - AluSg SINE Alu 0 310 1 976 68 0 0 chr6 22895325 22895443 -166384111 + AluSp/q SINE Alu 179 296 -17 349 263 0 0 chr6 22895500 22895576 -166383978 + MIR SINE MIR 187 262 0 1963 151 0 0 chr6 22895957 22896255 -166383299 - AluJb SINE Alu -14 298 1 533 274 103 45 chr6 22896391 22896794 -166382760 - MLT1J LTR MaLR -41 470 1 1875 177 0 0 chr6 22897047 22897357 -166382197 + AluJo SINE Alu 1 310 -2 1945 162 32 0 chr6 22898226 22898603 -166380951 - L1MC1 LINE L1 -174 6159 5771 1853 220 63 18 chr6 22898864 22899418 -166380136 - L1ME3 LINE L1 -2 6160 5582 467 327 0 36 chr6 22899755 22899923 -166379631 + MIR3 SINE MIR 40 201 -7 34 83 0 9 chr6 22899923 22899941 -166379613 + AT_rich Low_complexity Low_complexity 1 18 -89 1792 168 0 17 chr6 22899941 22900232 -166379322 + AluJo SINE Alu 1 286 -26 34 83 0 9 chr6 22900232 22900321 -166379233 + AT_rich Low_complexity Low_complexity 18 107 0 29 47 0 0 chr6 22902071 22902114 -166377440 + AT_rich Low_complexity Low_complexity 1 43 0 2197 124 3 0 chr6 22902123 22902421 -166377133 - AluSx SINE Alu -13 299 1 336 186 12 0 chr6 22902421 22902507 -166377047 - Charlie2 DNA MER1_type -354 2508 2422 216 158 0 0 chr6 22902539 22902596 -166376958 + (TA)n Simple_repeat Simple_repeat 1 57 0 2423 46 0 0 chr6 22902598 22902878 -166376676 - AluY SINE Alu -22 289 10 260 131 98 0 chr6 22902904 22902965 -166376589 - Charlie2 DNA MER1_type -489 2373 2307 2220 98 7 3 chr6 22903910 22904206 -166375348 + AluSg SINE Alu 1 297 -13 1591 184 30 0 chr6 22904399 22904706 -166374848 - AluJb SINE Alu 0 318 4 225 250 0 0 chr6 22904901 22904973 -166374581 + A-rich Low_complexity Low_complexity 1 72 0 23 0 0 0 chr6 22905592 22905615 -166373939 + AT_rich Low_complexity Low_complexity 1 23 0 2226 98 0 0 chr6 22905789 22906076 -166373478 + AluSx SINE Alu 1 287 -25 192 263 70 0 chr6 22906429 22906486 -166373068 + MIR SINE MIR 172 232 -30 1328 204 171 67 chr6 22906659 22907330 -166372224 - LTR1B LTR ERV1 -85 741 1 704 197 13 4 chr6 22907441 22907619 -166371935 - L1MA6 LINE L1 -2 6295 6120 2280 107 0 3 chr6 22907631 22907941 -166371613 - AluSq SINE Alu 0 313 5 882 158 0 102 chr6 22907988 22908165 -166371389 + FRAM SINE Alu 1 158 -18 22 0 0 0 chr6 22908991 22909013 -166370541 + AT_rich Low_complexity Low_complexity 1 22 0 1399 174 114 23 chr6 22909198 22909583 -166369971 - MER95 LTR ERV -10 421 2 2089 122 27 7 chr6 22909613 22909907 -166369647 - AluSx SINE Alu -12 300 1 253 279 20 102 chr6 22910042 22910131 -166369423 + MIR SINE MIR 13 87 -175 1619 204 3 20 chr6 22910131 22910435 -166369119 - AluJb SINE Alu -13 299 1 253 279 20 102 chr6 22910435 22910492 -166369062 + MIR SINE MIR 87 147 -115 333 0 0 0 chr6 22910533 22910570 -166368984 + (TG)n Simple_repeat Simple_repeat 2 38 0 1150 162 40 5 chr6 22910570 22910792 -166368762 - MLT2B2 LTR ERVL -285 230 1 756 241 122 65 chr6 22910792 22910991 -166368563 - MLT1I LTR MaLR -7 402 179 2183 110 0 31 chr6 22910991 22911308 -166368246 - AluSc SINE Alu -2 307 1 756 241 122 65 chr6 22911308 22911401 -166368153 - MLT1I LTR MaLR -230 179 93 228 225 0 56 chr6 22912152 22912241 -166367313 - L1ME1 LINE L1 -25 6141 6058 23 0 0 0 chr6 22912288 22912311 -166367243 + AT_rich Low_complexity Low_complexity 1 23 0 2301 122 0 0 chr6 22912311 22912622 -166366932 + AluSx SINE Alu 1 311 -1 1141 137 113 101 chr6 22913489 22913778 -166365776 + L1MB3 LINE L1 5838 6122 -58 2237 115 3 0 chr6 22913778 22914082 -166365472 + AluSx SINE Alu 3 307 -5 698 199 0 15 chr6 22914086 22914217 -166365337 + FLAM_A SINE Alu 2 130 -3 1141 137 113 101 chr6 22914217 22914259 -166365295 + L1MB3 LINE L1 6124 6178 -2 1249 169 55 128 chr6 22914374 22914717 -166364837 - AluYb8 SINE Alu 0 318 1 1873 173 0 13 chr6 22914970 22915277 -166364277 + AluJb SINE Alu 5 307 -5 1439 149 39 57 chr6 22915281 22915616 -166363938 + L1MB8 LINE L1 5834 6162 -16 383 98 148 0 chr6 22915858 22915919 -166363635 - U6 snRNA snRNA -37 70 1 2067 129 23 0 chr6 22916547 22916850 -166362704 + AluSx SINE Alu 1 310 -2 13109 121 74 10 chr6 22916940 22919188 -166360366 - Tigger1 DNA MER2_type 0 2418 26 304 218 161 65 chr6 22920269 22920393 -166359161 - MIR SINE MIR -16 246 111 2395 94 3 0 chr6 22920679 22920988 -166358566 + AluSx SINE Alu 1 310 -2 281 200 27 0 chr6 22921566 22921641 -166357913 + CT-rich Low_complexity Low_complexity 2 78 0 246 62 0 0 chr6 22922013 22922045 -166357509 + (A)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr6 22925001 22925025 -166354529 + AT_rich Low_complexity Low_complexity 1 24 0 1897 156 3 3 chr6 22925055 22925350 -166354204 + AluSx SINE Alu 1 295 -17 948 118 16 0 chr6 22925573 22925700 -166353854 + AluSx SINE Alu 1 129 -183 234 222 0 0 chr6 22925700 22925754 -166353800 + (TA)n Simple_repeat Simple_repeat 1 54 0 1400 109 0 0 chr6 22925759 22925943 -166353611 + AluSx SINE Alu 127 310 -2 1648 166 35 31 chr6 22927032 22927321 -166352233 + AluJo SINE Alu 1 290 -22 188 83 0 28 chr6 22928632 22928668 -166350886 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 1298 150 28 156 chr6 22929506 22929859 -166349695 + AluYa5 SINE Alu 1 308 -3 403 289 31 8 chr6 22930046 22930240 -166349314 - MIR SINE MIR -5 257 2 370 368 64 23 chr6 22930418 22930858 -166348696 - L2 LINE L2 -901 2413 1956 193 214 0 0 chr6 22931008 22931050 -166348504 + L2 LINE L2 3230 3271 -42 721 233 26 69 chr6 22931352 22931584 -166347970 - MIR SINE MIR -9 253 32 3674 146 33 8 chr6 22931812 22932483 -166347071 + L1MA4 LINE L1 5602 6289 -11 2423 74 3 0 chr6 22933151 22933446 -166346108 + AluY SINE Alu 1 296 -15 2253 89 0 20 chr6 22933446 22933749 -166345805 + AluY SINE Alu 1 297 -14 1343 234 163 18 chr6 22934248 22934689 -166344865 - MLT1J LTR MaLR -6 505 1 223 93 47 0 chr6 22935632 22935675 -166343879 + CT-rich Low_complexity Low_complexity 4 48 0 613 142 75 8 chr6 22935736 22935856 -166343698 - L1MA3 LINE L1 -6 6299 6172 1166 274 87 56 chr6 22936162 22936647 -166342907 - MLT1J LTR MaLR -11 500 1 2276 88 3 29 chr6 22936671 22936978 -166342576 + AluY SINE Alu 1 299 -12 2140 104 0 64 chr6 22937994 22938320 -166341234 + AluSx SINE Alu 1 305 -7 399 249 258 65 chr6 22938438 22938479 -166341075 - MIR SINE MIR -1 261 229 267 103 0 0 chr6 22938479 22938518 -166341036 + (TA)n Simple_repeat Simple_repeat 1 39 0 399 249 258 65 chr6 22938518 22938693 -166340861 - MIR SINE MIR -33 229 3 573 15 0 0 chr6 22938956 22939022 -166340532 + (TCCA)n Simple_repeat Simple_repeat 3 68 0 191 125 175 0 chr6 22939579 22939619 -166339935 + L2 LINE L2 3221 3267 -5 34 42 0 0 chr6 22940186 22940234 -166339320 + AT_rich Low_complexity Low_complexity 1 48 0 1902 151 3 0 chr6 22941313 22941597 -166337957 - AluSx SINE Alu -26 286 2 2247 99 3 0 chr6 22942802 22943116 -166336438 - AluSp SINE Alu 0 313 1 736 177 0 57 chr6 22943126 22943267 -166336287 - FLAM_A SINE Alu 0 133 1 458 281 78 54 chr6 22943443 22943685 -166335869 + MIR SINE MIR 3 250 -12 903 144 0 0 chr6 22946715 22946847 -166332707 + FLAM_C SINE Alu 1 132 -1 189 74 0 0 chr6 22947741 22947768 -166331786 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 251 233 17 0 chr6 22948392 22948452 -166331102 - L1ME LINE L1 -387 5775 5715 21 36 0 0 chr6 22948511 22948539 -166331015 + AT_rich Low_complexity Low_complexity 1 28 0 279 298 26 53 chr6 22948747 22948861 -166330693 + MIR3 SINE MIR 92 202 -6 1323 239 123 6 chr6 22949809 22950160 -166329394 + MSTD LTR MaLR 1 392 -4 190 320 40 13 chr6 22950506 22950581 -166328973 + L2 LINE L2 2603 2679 -635 360 267 125 62 chr6 22950583 22950684 -166328870 - MIR SINE MIR 0 262 144 1609 174 49 54 chr6 22950684 22951074 -166328480 - MLT1B LTR MaLR -2 388 1 360 267 125 62 chr6 22951074 22951148 -166328406 - MIR SINE MIR -118 144 76 204 343 41 46 chr6 22951150 22951369 -166328185 + L2 LINE L2 2287 2504 -810 1707 160 7 42 chr6 22951392 22951699 -166327855 - AluJb SINE Alu -6 306 11 5963 101 19 12 chr6 22951821 22952856 -166326698 + L1PA8 LINE L1 5132 6172 0 2238 211 42 39 chr6 22953289 22953911 -166325643 - MLT1E3 LTR MaLR 0 624 1 504 216 17 9 chr6 22954239 22954355 -166325199 - MER94 DNA DNA -13 121 5 666 128 147 0 chr6 22954614 22954723 -166324831 - AluJb SINE Alu -187 125 1 258 313 42 42 chr6 22954788 22954890 -166324664 + MIR SINE MIR 97 201 -61 1940 160 48 3 chr6 22954890 22955222 -166324332 + MER7A DNA MER2_type 2 346 0 258 313 42 42 chr6 22955222 22955285 -166324269 + MIR SINE MIR 200 262 0 243 0 0 0 chr6 22956322 22956349 -166323205 + (CAG)n Simple_repeat Simple_repeat 2 28 0 29 28 0 0 chr6 22956775 22956811 -166322743 + AT_rich Low_complexity Low_complexity 1 36 0 6060 198 64 14 chr6 22957881 22959268 -166320286 - Cheshire DNA MER1_type -83 2337 881 1056 211 5 0 chr6 22959872 22960080 -166319474 + MER3 DNA MER1_type 1 209 0 376 267 30 59 chr6 22960296 22960431 -166319123 - L2 LINE L2 -1 3312 3182 1248 91 151 0 chr6 22960941 22961140 -166318414 - MER30 DNA MER1_type 0 230 2 2033 148 33 12 chr6 22961390 22961720 -166317834 + MER1B DNA MER1_type 1 337 0 23 0 0 0 chr6 22962975 22962998 -166316556 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 22963649 22963677 -166315877 + AT_rich Low_complexity Low_complexity 1 28 0 365 240 96 10 chr6 22965302 22965406 -166314148 + MIR SINE MIR 140 252 -10 333 47 0 0 chr6 22965673 22965716 -166313838 + (TG)n Simple_repeat Simple_repeat 2 44 0 186 241 56 19 chr6 22965730 22965784 -166313770 + MIR3 SINE MIR 141 196 -12 1404 213 51 14 chr6 22967143 22967495 -166312059 - MLT1A1 LTR MaLR 0 365 1 295 234 137 48 chr6 22967986 22968110 -166311444 + MIR SINE MIR 1 136 -72 613 260 85 0 chr6 22968332 22968509 -166311045 + MIR SINE MIR 40 231 -31 672 185 76 0 chr6 22969444 22969563 -166309991 - FLAM_A SINE Alu -4 129 2 1038 175 20 55 chr6 22970462 22970662 -166308892 - MER58A DNA MER1_type -31 193 1 2951 165 47 30 chr6 22972612 22973218 -166306336 - LTR27 LTR ERV1 0 636 1 1234 180 0 72 chr6 22973480 22973730 -166305824 + AluJb SINE Alu 58 289 -23 279 284 99 81 chr6 22973813 22974024 -166305530 + MIR SINE MIR 15 229 -33 578 255 103 22 chr6 22974099 22974283 -166305271 - MIR SINE MIR 0 262 64 1613 180 0 76 chr6 22974703 22975020 -166304534 - AluJo SINE Alu -17 295 3 775 156 0 8 chr6 22975081 22975209 -166304345 + FLAM_C SINE Alu 1 127 -16 4360 218 58 32 chr6 22975370 22977694 -166301860 - L1ME1 LINE L1 -48 6118 3663 5794 78 25 1 chr6 22977726 22978518 -166301036 - L1PA10 LINE L1 -1 7605 6795 * 15722 141 7 2 chr6 22978506 22981076 -166298478 - L1PA10 LINE L1 -1627 5957 3375 2244 259 27 54 chr6 22981070 22982104 -166297450 - L1PA10 LINE L1 -4745 2253 1 * 1410 145 8 20 chr6 22982122 22982371 -166297183 - L1PB3 LINE L1 -8 6146 5901 1696 244 109 10 chr6 22982372 22982518 -166297036 - L1ME1 LINE L1 -2470 3676 3546 183 42 0 0 chr6 22982518 22982542 -166297012 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 1696 244 109 10 chr6 22982542 22983082 -166296472 - L1ME1 LINE L1 -2600 3546 2922 2244 98 0 0 chr6 22985251 22985564 -166293990 - AluSx SINE Alu 0 313 1 312 183 158 85 chr6 22985907 22986153 -166293401 + HAL1 LINE L1 922 1185 -1322 1083 288 162 34 chr6 22986202 22987301 -166292253 + HAL1 LINE L1 1267 2506 -1 463 44 176 0 chr6 22988300 22988368 -166291186 + MADE1 DNA Mariner 1 80 0 846 192 8 110 chr6 22988804 22988955 -166290599 - L1ME1 LINE L1 -6 6160 6042 1703 172 0 14 chr6 22988955 22989275 -166290279 - AluJo SINE Alu 0 316 1 846 192 8 110 chr6 22989275 22989376 -166290178 - L1ME1 LINE L1 -124 6042 5932 784 259 19 67 chr6 22989432 22989803 -166289751 - L1ME3A LINE L1 -53 6100 5748 1105 75 0 20 chr6 22989811 22989957 -166289597 + AluY SINE Alu 132 274 -37 4059 251 75 39 chr6 22990013 22992123 -166287431 - L1ME3A LINE L1 -475 5678 3494 2460 59 0 13 chr6 22992124 22992427 -166287127 - AluY SINE Alu 0 311 13 232 250 0 0 chr6 22992691 22992759 -166286795 + T-rich Low_complexity Low_complexity 1 68 0 279 348 8 8 chr6 22992768 22992886 -166286668 - MLT1-int LTR MaLR -555 816 699 234 253 67 20 chr6 22992891 22993041 -166286513 - L1ME3A LINE L1 -5002 1308 1152 402 253 11 0 chr6 22993188 22993279 -166286275 + MER5A DNA MER1_type 12 103 -86 296 247 93 83 chr6 22993315 22993505 -166286049 - L1MEd LINE L1 -5104 1015 828 2298 115 50 6 chr6 22993505 22993862 -166285692 + THE1C LTR MaLR 3 375 0 296 247 93 83 chr6 22993862 22994106 -166285448 - L1MEd LINE L1 -5291 828 593 863 259 56 0 chr6 22994215 22994412 -166285142 + MER63A DNA MER1_type 1 208 -2 743 63 0 0 chr6 22994835 22994930 -166284624 + AluY SINE Alu 213 307 -4 1745 157 85 9 chr6 22995043 22995374 -166284180 - L1MC1 LINE L1 -12 6321 5966 1750 166 49 3 chr6 23045802 23046086 -166233468 + AluJb SINE Alu 1 297 -15 317 333 38 8 chr6 23046089 23046221 -166233333 + MIR SINE MIR 61 196 -66 688 241 36 27 chr6 23046892 23047116 -166232438 - MSTD LTR MaLR -170 226 1 1464 188 83 24 chr6 23047116 23047452 -166232102 + MSTD LTR MaLR 41 396 0 368 231 148 0 chr6 23048150 23048258 -166231296 - L2 LINE L2 -1 3312 3189 1967 149 0 0 chr6 23050052 23050367 -166229187 - AluSx SINE Alu 0 315 1 2117 82 16 43 chr6 23050374 23050677 -166228877 - AluSc SINE Alu -14 295 1 405 297 43 0 chr6 23051212 23051350 -166228204 + MIR3 SINE MIR 51 194 -14 2249 57 43 33 chr6 23052804 23053104 -166226450 + AluY SINE Alu 1 303 -8 2395 63 0 3 chr6 23053104 23053404 -166226150 + AluY SINE Alu 1 299 -12 4192 138 17 13 chr6 23053422 23053439 -166226115 + L1MB2 LINE L1 5458 5473 -698 225 0 0 0 chr6 23053439 23053464 -166226090 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4192 138 17 13 chr6 23053464 23054154 -166225400 + L1MB2 LINE L1 5473 6168 -3 627 301 26 40 chr6 23054165 23054394 -166225160 + MIR SINE MIR 22 253 -9 671 231 19 39 chr6 23054451 23054711 -166224843 + L1MC5 LINE L1 7659 7913 -48 1311 92 35 0 chr6 23055072 23055245 -166224309 + AluSg/x SINE Alu 133 311 -1 515 172 0 0 chr6 23055299 23055386 -166224168 + FLAM SINE Alu 41 127 -16 1995 130 3 7 chr6 23055401 23055685 -166223869 + AluSx SINE Alu 1 283 -29 252 0 0 0 chr6 23055951 23055979 -166223575 + (T)n Simple_repeat Simple_repeat 1 28 0 333 251 124 66 chr6 23056801 23057042 -166222512 + MIR SINE MIR 3 262 0 323 232 184 14 chr6 23057083 23057290 -166222264 + MER113 DNA MER1_type? 36 277 -244 2417 96 0 3 chr6 23058162 23058475 -166221079 - AluSx SINE Alu 0 312 1 561 227 67 0 chr6 23058479 23058629 -166220925 - L1MB4 LINE L1 -118 6062 5903 308 220 242 0 chr6 23058889 23058980 -166220574 + L2 LINE L2 3197 3309 -4 574 250 115 48 chr6 23059196 23059461 -166220093 + L1ME4a LINE L1 5692 5993 -128 2131 135 0 10 chr6 23059461 23059772 -166219782 + AluJb SINE Alu 1 308 -4 574 250 115 48 chr6 23059772 23059898 -166219656 + L1ME4a LINE L1 5993 6109 -12 368 294 97 59 chr6 23060380 23060624 -166218930 + MIR SINE MIR 3 262 0 660 131 65 0 chr6 23060665 23060772 -166218782 + FLAM_A SINE Alu 20 133 -9 27 0 0 0 chr6 23062424 23062451 -166217103 + AT_rich Low_complexity Low_complexity 1 27 0 352 347 8 16 chr6 23062646 23062770 -166216784 + L2 LINE L2 2578 2700 -614 294 362 11 32 chr6 23062819 23062913 -166216641 + L2 LINE L2 3102 3193 -79 222 62 0 0 chr6 23063747 23063779 -166215775 + (TTGG)n Simple_repeat Simple_repeat 2 33 0 2025 119 18 0 chr6 23063779 23064056 -166215498 - AluSg SINE Alu -28 282 1 580 268 176 35 chr6 23064481 23064648 -166214906 - L1ME4a LINE L1 -35 6086 5944 2184 89 7 7 chr6 23064648 23064939 -166214615 - AluSg SINE Alu -19 291 1 580 268 176 35 chr6 23064939 23065253 -166214301 - L1ME4a LINE L1 -177 5944 5537 338 306 0 37 chr6 23065259 23065393 -166214161 - L1ME4a LINE L1 -2322 3824 3696 187 320 31 41 chr6 23065619 23065716 -166213838 - MIR SINE MIR -145 117 22 1899 127 7 29 chr6 23065896 23066204 -166213350 + AluJo SINE Alu 1 301 -11 394 286 141 42 chr6 23066295 23066536 -166213018 - L1ME4a LINE L1 -2705 3441 3177 31 26 0 0 chr6 23066618 23066656 -166212898 + AT_rich Low_complexity Low_complexity 1 38 0 284 333 114 8 chr6 23067001 23067124 -166212430 - L2 LINE L2 -10 3303 3168 2036 91 0 0 chr6 23067224 23067476 -166212078 - AluSx SINE Alu -60 252 1 207 100 0 0 chr6 23068142 23068172 -166211382 + (CA)n Simple_repeat Simple_repeat 2 31 0 325 308 0 0 chr6 23068876 23068954 -166210600 - MER2 DNA MER2_type 0 345 268 931 170 48 0 chr6 23069040 23069205 -166210349 - MER2 DNA MER2_type -172 173 1 1832 236 63 31 chr6 23069446 23070021 -166209533 + MLT1E LTR MaLR 1 593 0 329 295 68 17 chr6 23070034 23070271 -166209283 + L1ME LINE L1 4814 5062 -1084 768 266 19 62 chr6 23070416 23070439 -166209115 + L1ME LINE L1 5260 5282 -884 1797 158 0 61 chr6 23070439 23070564 -166208990 + AluJo SINE Alu 1 132 -180 2350 113 0 0 chr6 23070564 23070874 -166208680 + AluSx SINE Alu 1 310 -2 1797 158 0 61 chr6 23070874 23071077 -166208477 + AluJo SINE Alu 132 309 -3 768 266 19 62 chr6 23071077 23071166 -166208388 + L1ME LINE L1 5282 5373 -793 198 103 0 0 chr6 23071166 23071195 -166208359 + (TA)n Simple_repeat Simple_repeat 1 29 0 768 266 19 62 chr6 23071195 23071527 -166208027 + L1ME LINE L1 5373 5683 -483 2062 95 7 52 chr6 23072322 23072627 -166206927 - AluSc SINE Alu -18 291 1 669 281 45 10 chr6 23073139 23073338 -166206216 - MIR SINE MIR -12 250 45 222 37 0 0 chr6 23074076 23074103 -166205451 + (A)n Simple_repeat Simple_repeat 1 27 0 181 219 0 0 chr6 23074733 23074765 -166204789 + L2 LINE L2 3151 3182 -90 246 367 46 0 chr6 23074869 23074978 -166204576 + L2 LINE L2 3156 3269 -3 2261 102 0 13 chr6 23078441 23078755 -166200799 + AluSg SINE Alu 1 310 0 647 250 88 20 chr6 23079314 23079518 -166200036 - MIR SINE MIR -42 220 3 569 303 58 33 chr6 23080247 23080488 -166199066 + L2 LINE L2 2569 2815 -499 452 219 164 64 chr6 23080516 23080735 -166198819 - L1ME LINE L1 -331 5790 5550 1073 178 8 54 chr6 23081333 23081575 -166197979 - AluJo SINE Alu -6 306 76 2566 112 3 11 chr6 23081848 23082215 -166197339 + THE1B LTR MaLR 1 364 0 2045 132 0 7 chr6 23082240 23082528 -166197026 - AluSx SINE Alu -21 291 6 22 0 0 0 chr6 23084091 23084113 -166195441 + AT_rich Low_complexity Low_complexity 1 22 0 622 300 42 6 chr6 23084800 23085000 -166194554 - MIR SINE MIR -54 208 3 952 222 36 13 chr6 23085754 23085979 -166193575 - MIR SINE MIR -19 243 14 258 285 110 89 chr6 23085993 23086239 -166193315 + L2 LINE L2 3017 3267 -5 2142 122 6 6 chr6 23087906 23088217 -166191337 - AluSq SINE Alu -2 311 1 211 182 0 0 chr6 23088884 23088917 -166190637 + polypyrimidine Low_complexity Low_complexity 3 35 0 1560 175 16 62 chr6 23088923 23089243 -166190311 - AluJo SINE Alu -6 306 2 1349 194 121 59 chr6 23090316 23090738 -166188816 - MLT1D LTR MaLR -57 448 1 333 264 69 129 chr6 23091148 23091466 -166188088 + MLT1H LTR MaLR 124 422 -127 348 24 0 0 chr6 23091602 23091643 -166187911 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1068 244 119 44 chr6 23091643 23092162 -166187392 - L2 LINE L2 -13 3300 2736 2230 184 60 7 chr6 23092170 23092708 -166186846 - L1MB4 LINE L1 -1 6179 5614 226 239 0 0 chr6 23092710 23092756 -166186798 - L2 LINE L2 -565 2749 2704 549 281 80 5 chr6 23093204 23093403 -166186151 - MIR SINE MIR -11 251 38 29 47 0 0 chr6 23093792 23093835 -166185719 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr6 23093878 23093901 -166185653 + AT_rich Low_complexity Low_complexity 1 23 0 1833 162 0 19 chr6 23094454 23094762 -166184792 + AluJb SINE Alu 1 302 -10 541 241 122 82 chr6 23094833 23095152 -166184402 + MLT1I LTR MaLR 69 400 -9 235 339 54 8 chr6 23095442 23095572 -166183982 + LTR67 LTR ERVL 97 232 -325 324 251 105 47 chr6 23095593 23095784 -166183770 + LTR67 LTR ERVL 356 557 0 242 236 69 97 chr6 23095852 23095895 -166183659 + L2 LINE L2 3136 3179 -134 2125 167 3 21 chr6 23095895 23096267 -166183287 - MLT1A1 LTR MaLR 0 365 1 242 236 69 97 chr6 23096267 23096367 -166183187 + L2 LINE L2 3179 3275 -38 434 213 37 9 chr6 23096381 23096489 -166183065 + MER94 DNA DNA 1 111 -23 261 240 53 13 chr6 23097363 23097438 -166182116 + MIR SINE MIR 185 262 0 681 287 30 0 chr6 23098793 23098960 -166180594 - MIR SINE MIR -90 172 1 1156 224 53 0 chr6 23098987 23099232 -166180322 - AluJo SINE Alu -17 295 38 1054 79 7 0 chr6 23099334 23099486 -166180068 + MER4D LTR ERV1 176 328 -544 2242 99 0 3 chr6 23099487 23099780 -166179774 - AluSx SINE Alu -14 298 7 1806 137 7 52 chr6 23099949 23100256 -166179298 - AluJb SINE Alu -19 293 1 1404 179 16 35 chr6 23102152 23102470 -166177084 - MER33 DNA MER1_type 0 324 13 478 152 31 96 chr6 23102562 23102699 -166176855 + MIR3 SINE MIR 74 202 -6 330 281 106 55 chr6 23103215 23103414 -166176140 - L1ME LINE L1 -645 5476 5268 306 91 0 0 chr6 23104061 23104105 -166175449 + L1MB1 LINE L1 6120 6163 -5 2306 93 3 3 chr6 23105655 23105956 -166173598 - AluSq SINE Alu -10 303 3 201 273 191 9 chr6 23106893 23107003 -166172551 + MIR3 SINE MIR 67 196 -12 21 75 0 15 chr6 23107261 23107293 -166172261 + AT_rich Low_complexity Low_complexity 1 32 -34 2949 6 0 0 chr6 23107293 23107611 -166171943 - AluYb8 SINE Alu 0 318 1 21 75 0 15 chr6 23107611 23107645 -166171909 + AT_rich Low_complexity Low_complexity 32 66 0 1869 158 0 22 chr6 23108102 23108413 -166171141 - AluJo SINE Alu -8 304 1 204 97 0 0 chr6 23108596 23108627 -166170927 + (GA)n Simple_repeat Simple_repeat 2 32 0 213 91 91 23 chr6 23108811 23108855 -166170699 - MIR3 SINE MIR -49 159 113 1166 179 133 60 chr6 23109160 23109529 -166170025 - MSTD LTR MaLR 0 396 1 675 165 0 0 chr6 23110223 23110338 -166169216 - FRAM SINE Alu -2 174 60 23 0 0 0 chr6 23110339 23110362 -166169192 + AT_rich Low_complexity Low_complexity 1 23 0 2091 138 0 0 chr6 23110463 23110754 -166168800 - AluSx SINE Alu -21 291 1 1843 164 4 0 chr6 23110765 23111101 -166168453 - AluJb SINE Alu 0 337 1 2373 89 0 0 chr6 23112169 23112461 -166167093 + AluSx SINE Alu 3 294 -18 300 53 0 0 chr6 23113809 23113847 -166165707 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 255 125 0 0 chr6 23116281 23116329 -166163225 + L1MC3 LINE L1 7738 7785 0 21 0 0 0 chr6 23117638 23117659 -166161895 + AT_rich Low_complexity Low_complexity 1 21 0 1378 171 4 61 chr6 23118293 23118470 -166161084 - AluJo SINE Alu -8 304 147 1988 160 3 6 chr6 23118470 23118783 -166160771 - AluSx SINE Alu 0 312 1 1378 171 4 61 chr6 23118783 23118885 -166160669 - AluJo SINE Alu -165 147 41 1219 87 35 23 chr6 23118939 23119112 -166160442 - AluSg/x SINE Alu -5 305 131 273 259 25 0 chr6 23119491 23119572 -166159982 - L1MC5 LINE L1 -64 7897 7815 192 217 130 54 chr6 23122110 23122202 -166157352 + MIR SINE MIR 105 203 -59 407 51 0 17 chr6 23125076 23125135 -166154419 + (TG)n Simple_repeat Simple_repeat 1 58 0 436 245 40 31 chr6 23125262 23125423 -166154131 + MIR SINE MIR 3 161 -62 1719 192 23 0 chr6 23126368 23126670 -166152884 - AluJb SINE Alu -3 309 1 256 335 28 84 chr6 23126999 23127178 -166152376 + L2 LINE L2 3099 3267 -5 264 282 94 31 chr6 23127405 23127607 -166151947 + MER20B DNA MER1_type 5 219 0 2770 48 11 3 chr6 23127638 23127990 -166151564 - THE1A LTR MaLR 0 355 1 556 299 128 80 chr6 23127999 23128414 -166151140 + L2 LINE L2 2836 3270 -2 591 237 182 40 chr6 23128664 23128917 -166150637 + MER5C DNA MER1_type 1 289 -35 324 228 69 111 chr6 23131034 23131223 -166148331 + MIR SINE MIR 70 250 -12 1740 153 3 66 chr6 23131366 23131699 -166147855 + AluJb SINE Alu 1 312 0 1177 190 9 0 chr6 23132565 23132776 -166146778 + AluJo SINE Alu 85 297 -15 2533 59 0 3 chr6 23133431 23133735 -166145819 + AluY SINE Alu 1 303 -8 21 57 0 0 chr6 23135607 23135642 -166143912 + AT_rich Low_complexity Low_complexity 1 35 0 2151 110 0 20 chr6 23136008 23136308 -166143246 - AluSx SINE Alu -18 294 1 2293 67 0 3 chr6 23136717 23137020 -166142534 - AluY SINE Alu 0 302 1 1169 156 6 0 chr6 23138080 23138260 -166141294 - AluJo SINE Alu -131 181 1 1058 177 0 21 chr6 23140839 23141025 -166138529 + MLT1D LTR MaLR 2 183 -322 1552 113 61 0 chr6 23141035 23141284 -166138270 + AluSx SINE Alu 59 320 0 1046 211 95 9 chr6 23141288 23141520 -166138034 + MLT1D LTR MaLR 248 499 -6 273 362 80 6 chr6 23142244 23142407 -166137147 - MIR SINE MIR -9 253 79 578 235 74 19 chr6 23142641 23142803 -166136751 - MIR SINE MIR -44 218 48 2312 50 18 0 chr6 23143416 23143739 -166135815 - AluY SINE Alu 0 328 1 715 170 177 0 chr6 23144848 23144995 -166134559 + MER69A DNA AcHobo 5 177 0 401 270 54 0 chr6 23145360 23145471 -166134083 - L2 LINE L2 0 3272 3156 202 332 145 31 chr6 23145983 23146176 -166133378 + L2 LINE L2 2467 2681 -633 2150 125 0 0 chr6 23146899 23147194 -166132360 - AluSx SINE Alu -17 295 1 2284 90 0 19 chr6 23148152 23148462 -166131092 - AluSq SINE Alu -9 304 1 1900 164 3 3 chr6 23148728 23149040 -166130514 - AluJo SINE Alu 0 312 1 205 339 0 37 chr6 23149693 23149802 -166129752 + CT-rich Low_complexity Low_complexity 4 108 0 526 281 109 34 chr6 23150213 23150587 -166128967 + MLT1I LTR MaLR 1 449 -1 342 0 0 0 chr6 23150686 23150724 -166128830 + (TG)n Simple_repeat Simple_repeat 2 39 0 2007 226 145 15 chr6 23150784 23151403 -166128151 - L1ME3A LINE L1 0 6170 5461 402 335 70 10 chr6 23151503 23151703 -166127851 - MIR SINE MIR -31 231 20 210 143 0 0 chr6 23151914 23151949 -166127605 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 251 261 29 14 chr6 23152232 23152301 -166127253 + GA-rich Low_complexity Low_complexity 5 74 0 492 208 69 28 chr6 23152301 23152445 -166127109 + L1MA9 LINE L1 6125 6274 -38 2042 220 69 8 chr6 23152482 23152960 -166126594 + MER119 DNA MER1_type 17 523 -60 5368 217 30 15 chr6 23154148 23155519 -166124035 + L1MB4 LINE L1 4089 5490 -690 3790 153 32 7 chr6 23155515 23156471 -166123083 - L1PA16 LINE L1 -547 5619 4645 * 3609 104 17 10 chr6 23156476 23156996 -166122558 + L1PA16 LINE L1 5643 6166 0 3078 162 36 5 chr6 23156997 23157553 -166122001 + L1MB4 LINE L1 5486 6058 -122 193 253 33 77 chr6 23157602 23157693 -166121861 - L2 LINE L2 -498 2816 2730 913 45 0 9 chr6 23158870 23158980 -166120574 + AluY SINE Alu 120 228 -83 2189 106 0 3 chr6 23159167 23159449 -166120105 - AluSq SINE Alu -17 296 16 288 288 55 49 chr6 23159465 23159730 -166119824 - L1MC5 LINE L1 -308 7679 7481 261 333 10 10 chr6 23159900 23159996 -166119558 - MER5A DNA MER1_type -68 121 26 8949 169 51 17 chr6 23160243 23160323 -166119231 - L1MC3 LINE L1 -607 7178 7102 8657 108 45 9 chr6 23160323 23161580 -166117974 - HSMAR2 DNA Mariner 0 1302 1 8949 169 51 17 chr6 23161580 23161638 -166117916 - L1MC3 LINE L1 -683 7102 7047 180 77 0 0 chr6 23161638 23161664 -166117890 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 8949 169 51 17 chr6 23161664 23162616 -166116938 - L1MC3 LINE L1 -738 7047 6007 180 0 0 0 chr6 23162616 23162636 -166116918 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8949 169 51 17 chr6 23162636 23163240 -166116314 - L1MC3 LINE L1 -1778 6007 5425 2163 135 0 0 chr6 23163340 23163644 -166115910 + AluSx SINE Alu 1 304 -8 2695 99 31 3 chr6 23164625 23164979 -166114575 - THE1B LTR MaLR 0 364 1 1522 123 176 0 chr6 23166597 23166841 -166112713 + AluSx SINE Alu 1 287 -25 789 202 0 8 chr6 23167477 23167606 -166111948 + FLAM_C SINE Alu 2 129 -14 583 78 31 31 chr6 23167606 23167735 -166111819 + (TA)n Simple_repeat Simple_repeat 2 130 0 297 333 89 15 chr6 23167817 23167952 -166111602 - L2 LINE L2 -1 3271 3127 2032 145 0 0 chr6 23168250 23168546 -166111008 - AluSx SINE Alu -16 296 1 451 272 114 80 chr6 23168691 23169129 -166110425 - MLT1J LTR MaLR -56 455 3 470 233 27 48 chr6 23169266 23169337 -166110217 + MER5B DNA MER1_type 36 107 -71 808 197 34 56 chr6 23169337 23169470 -166110084 - MER5B DNA MER1_type -4 174 44 2297 76 20 0 chr6 23169470 23169771 -166109783 + AluY SINE Alu 1 307 -4 808 197 34 56 chr6 23169771 23169815 -166109739 - MER5B DNA MER1_type -134 44 1 470 233 27 48 chr6 23169815 23169889 -166109665 + MER5B DNA MER1_type 107 178 0 1885 151 3 10 chr6 23170745 23171036 -166108518 - AluJb SINE Alu -23 289 1 545 264 192 6 chr6 23171207 23171389 -166108165 - MIR SINE MIR 0 262 47 219 146 0 24 chr6 23171425 23171467 -166108087 + (GGA)n Simple_repeat Simple_repeat 1 40 0 2260 122 165 5 chr6 23171697 23172066 -166107488 + MSTA LTR MaLR 1 428 0 413 127 70 0 chr6 23172448 23172519 -166107035 + AluJ/FRAM SINE Alu 230 305 -7 335 355 93 23 chr6 23172740 23172999 -166106555 + L2 LINE L2 2926 3202 -70 366 247 21 0 chr6 23174362 23174455 -166105099 - MIR3 SINE MIR -6 202 108 401 294 83 53 chr6 23175428 23175656 -166103898 - MIR SINE MIR -20 242 8 5716 106 13 5 chr6 23175922 23176750 -166102804 + L1PA16 LINE L1 5332 6166 0 2557 67 0 16 chr6 23176863 23177177 -166102377 - AluY SINE Alu -2 309 1 1841 174 16 47 chr6 23177620 23178143 -166101411 + L1MB2 LINE L1 5647 6125 -46 234 143 0 41 chr6 23178195 23178244 -166101310 + L1MB5 LINE L1 6096 6142 -32 513 153 0 0 chr6 23178244 23178316 -166101238 + AluJ/FRAM SINE Alu 221 292 -20 2058 124 3 0 chr6 23178461 23178743 -166100811 - AluSx SINE Alu -12 300 18 2449 42 0 3 chr6 23179630 23179951 -166099603 + AluY SINE Alu 1 320 0 1506 201 108 31 chr6 23180036 23180462 -166099092 - MLT1C LTR MaLR -2 465 17 210 273 81 61 chr6 23180712 23180811 -166098743 - MIR SINE MIR -90 118 18 1758 154 31 20 chr6 23181904 23182197 -166097357 - AluJo SINE Alu -16 296 1 401 337 121 8 chr6 23182782 23183138 -166096416 - L2 LINE L2 -941 2373 1978 200 247 0 110 chr6 23183238 23183311 -166096243 + L2 LINE L2 2244 2308 -1006 1171 215 14 0 chr6 23183607 23183826 -166095728 - MER58A DNA MER1_type -2 222 1 207 139 0 0 chr6 23184040 23184076 -166095478 + (TG)n Simple_repeat Simple_repeat 1 36 0 1616 174 10 41 chr6 23184076 23184370 -166095184 - AluJo SINE Alu -27 285 1 2417 97 3 0 chr6 23184391 23184700 -166094854 - AluSx SINE Alu -2 310 1 2107 113 19 10 chr6 23185995 23186304 -166093250 - AluSx SINE Alu 0 312 1 2244 121 0 0 chr6 23186847 23187152 -166092402 - AluSx SINE Alu -7 305 1 675 167 161 6 chr6 23187158 23187338 -166092216 - L1MD3 LINE L1 0 7995 7788 831 158 12 18 chr6 23188910 23189074 -166090480 + L1MB3 LINE L1 6021 6183 0 210 255 147 59 chr6 23189124 23189226 -166090328 + L2 LINE L2 3183 3293 -20 241 252 126 50 chr6 23192288 23192407 -166087147 + L3 LINE CR1 1375 1502 -75 1942 252 50 33 chr6 23192438 23192658 -166086896 + MLT1E LTR MaLR 2 217 -376 3534 114 32 31 chr6 23192658 23193082 -166086472 + MER41C LTR ERV1 1 423 -131 1930 148 0 41 chr6 23193082 23193399 -166086155 - AluSx SINE Alu -8 304 1 2433 80 3 3 chr6 23193404 23193705 -166085849 - AluY SINE Alu -10 301 1 3534 114 32 31 chr6 23193705 23193827 -166085727 + MER41C LTR ERV1 426 554 0 1942 252 50 33 chr6 23193827 23194185 -166085369 + MLT1E LTR MaLR 217 590 -3 2148 140 25 68 chr6 23195509 23195953 -166083601 - L1MB5 LINE L1 -2 6172 5748 188 353 29 0 chr6 23197830 23197898 -166081656 - L3 LINE CR1 -84 1493 1424 1646 184 110 60 chr6 23198048 23198392 -166081162 - MLT1C LTR MaLR -8 459 87 2176 147 0 0 chr6 23198392 23198704 -166080850 - AluSx SINE Alu 0 312 1 1646 184 110 60 chr6 23198704 23198794 -166080760 - MLT1C LTR MaLR -380 87 3 1908 130 34 0 chr6 23200462 23200731 -166078823 + AluSc SINE Alu 1 278 -31 1818 128 0 36 chr6 23201408 23201724 -166077830 + AluSx SINE Alu 21 326 0 888 157 30 12 chr6 23201729 23201895 -166077659 + L1MB2 LINE L1 6001 6169 -2 272 89 0 22 chr6 23201965 23202010 -166077544 + (TA)n Simple_repeat Simple_repeat 2 45 0 1865 128 53 0 chr6 23203204 23203470 -166076084 + AluSx SINE Alu 1 280 -32 288 0 0 0 chr6 23203471 23203503 -166076051 + (TAA)n Simple_repeat Simple_repeat 2 33 0 7130 59 1 1 chr6 23203806 23205517 -166074037 + L1PA7 LINE L1 4444 6154 0 379 261 157 7 chr6 23205578 23205731 -166073823 - MIR SINE MIR -41 221 46 216 0 0 0 chr6 23205788 23205812 -166073742 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 258 271 14 0 chr6 23205889 23205959 -166073595 + MER63 DNA MER1_type 983 1053 -7 1500 200 77 69 chr6 23206218 23206730 -166072824 + MER39 LTR ERV1 1 666 0 2114 118 6 40 chr6 23206777 23207100 -166072454 - AluSx SINE Alu 0 312 1 26 0 0 0 chr6 23207798 23207824 -166071730 + AT_rich Low_complexity Low_complexity 1 26 0 2335 89 0 0 chr6 23207824 23208115 -166071439 - AluSx SINE Alu -21 291 1 213 196 0 0 chr6 23208746 23208792 -166070762 + (CATA)n Simple_repeat Simple_repeat 2 47 0 2538 74 3 0 chr6 23208836 23209148 -166070406 - AluSp SINE Alu 0 313 1 23 54 0 0 chr6 23209162 23209199 -166070355 + AT_rich Low_complexity Low_complexity 1 37 0 2077 121 30 0 chr6 23209255 23209552 -166070002 - AluSx SINE Alu -6 306 1 264 257 125 28 chr6 23209552 23209696 -166069858 - L1ME4a LINE L1 -1 6120 5963 4856 104 32 96 chr6 23210015 23210568 -166068986 - Tigger3(Golem) DNA MER2_type -2 3027 2440 2208 89 0 7 chr6 23210568 23210849 -166068705 - AluSx SINE Alu -33 279 1 4856 104 32 96 chr6 23210849 23211274 -166068280 - Tigger3(Golem) DNA MER2_type -589 2440 1989 2166 118 3 3 chr6 23211274 23211570 -166067984 - AluSc SINE Alu -13 296 1 4856 104 32 96 chr6 23211570 23211897 -166067657 - Tigger3(Golem) DNA MER2_type -1040 1989 1 262 312 16 32 chr6 23211935 23212060 -166067494 - L2 LINE L2 0 3313 3191 816 261 107 27 chr6 23212063 23212522 -166067032 + L1MC/D LINE L1 5312 5799 -443 2279 110 44 99 chr6 23212560 23212834 -166066720 + LTR23 LTR ERV1 1 289 -148 2166 115 0 7 chr6 23212834 23213130 -166066424 - AluSx SINE Alu -18 294 1 2279 110 44 99 chr6 23213130 23213162 -166066392 + LTR23 LTR ERV1 289 321 -116 2237 90 4 0 chr6 23213162 23213441 -166066113 + AluSp SINE Alu 1 280 -33 194 0 0 37 chr6 23213441 23213468 -166066086 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 2320 98 3 10 chr6 23213477 23213784 -166065770 + AluSx SINE Alu 1 305 -7 2279 110 44 99 chr6 23213784 23213919 -166065635 + LTR23 LTR ERV1 328 429 -8 1262 229 95 23 chr6 23213969 23214342 -166065212 + MER39 LTR ERV1 6 351 -356 201 39 0 0 chr6 23214342 23214368 -166065186 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1262 229 95 23 chr6 23214368 23214432 -166065122 + MER39 LTR ERV1 351 707 0 2339 95 0 3 chr6 23214914 23215220 -166064334 - AluSq SINE Alu -8 305 1 26 23 0 23 chr6 23215288 23215307 -166064247 + AT_rich Low_complexity Low_complexity 1 19 -24 2259 100 0 3 chr6 23215307 23215598 -166063956 + AluSc SINE Alu 1 290 -19 26 23 0 23 chr6 23215598 23215622 -166063932 + AT_rich Low_complexity Low_complexity 19 43 0 219 375 7 7 chr6 23215694 23215830 -166063724 + MIR SINE MIR 109 244 -18 192 77 0 0 chr6 23216432 23216458 -166063096 + (GAAAA)n Simple_repeat Simple_repeat 1 26 0 1831 46 0 5 chr6 23217155 23217374 -166062180 + AluY SINE Alu 94 311 0 284 307 35 9 chr6 23217915 23218029 -166061525 - MIR SINE MIR -76 186 70 217 316 31 31 chr6 23218091 23218189 -166061365 - MIR3 SINE MIR -103 105 8 1517 119 0 0 chr6 23218913 23219114 -166060440 - AluJb SINE Alu -16 296 96 2454 69 0 3 chr6 23220810 23221115 -166058439 + AluY SINE Alu 1 304 -7 712 210 103 103 chr6 23221620 23221930 -166057624 + MLT1A2 LTR MaLR 3 312 -62 750 227 0 0 chr6 23221951 23222230 -166057324 + CT-rich Low_complexity Low_complexity 1 279 0 1590 153 40 11 chr6 23222275 23222550 -166057004 - AluJo SINE Alu -17 295 13 376 113 4 0 chr6 23222550 23222622 -166056932 + MSTB2 LTR MaLR 356 438 0 1002 276 98 19 chr6 23222913 23223341 -166056213 - MLT1C LTR MaLR 0 467 6 22 35 0 0 chr6 23223471 23223500 -166056054 + AT_rich Low_complexity Low_complexity 1 29 0 2032 93 4 0 chr6 23223501 23223628 -166055926 - L1PB2 LINE L1 -5 6146 6020 3895 121 32 6 chr6 23223628 23224342 -166055212 - L1PB2 LINE L1 -137 6017 5254 243 0 0 0 chr6 23225544 23225571 -166053983 + (A)n Simple_repeat Simple_repeat 1 27 0 303 277 71 32 chr6 23226069 23226224 -166053330 + MIR SINE MIR 28 188 -74 1180 224 0 9 chr6 23226298 23226521 -166053033 + MER58A DNA MER1_type 1 221 -3 418 198 153 45 chr6 23228408 23228519 -166051035 - MLT1C LTR MaLR 0 467 345 4060 103 2 16 chr6 23228524 23229104 -166050450 + L1PA14 LINE L1 5590 6161 0 21 36 0 0 chr6 23229334 23229362 -166050192 + AT_rich Low_complexity Low_complexity 1 28 0 6986 69 0 9 chr6 23229368 23230938 -166048616 + L1PA6 LINE L1 4586 6147 -7 2396 90 0 6 chr6 23231086 23231398 -166048156 + AluSg SINE Alu 1 310 0 856 272 112 21 chr6 23231405 23231736 -166047818 - MLT1C LTR MaLR -104 363 3 2040 115 13 3 chr6 23232326 23232630 -166046924 + AluSq SINE Alu 1 307 -6 666 41 31 0 chr6 23232653 23232751 -166046803 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 274 347 52 36 chr6 23234226 23234419 -166045135 - MIR SINE MIR -2 260 65 1592 185 7 23 chr6 23234513 23234821 -166044733 - AluJo SINE Alu -9 303 1 504 216 230 34 chr6 23235822 23235970 -166043584 - MER63A DNA MER1_type -33 177 1 1973 144 0 3 chr6 23236175 23236488 -166043066 + AluSx SINE Alu 1 312 0 2322 90 0 0 chr6 23237402 23237703 -166041851 + AluSc SINE Alu 1 301 -8 1259 142 9 32 chr6 23237939 23238158 -166041396 + L1MC1 LINE L1 6112 6325 -8 2075 101 25 0 chr6 23238158 23238444 -166041110 - AluY SINE Alu -18 293 1 1569 137 26 99 chr6 23238680 23239023 -166040531 - AluYb8 SINE Alu 0 318 1 2565 133 54 28 chr6 23240085 23240513 -166039041 - LTR32 LTR ERVL -3 468 30 888 228 20 15 chr6 23240531 23240733 -166038821 - HERVL32 LTR ERVL -1 3417 3215 315 239 37 128 chr6 23240815 23240850 -166038704 - PABL_B-int LTR ERV1 -446 6676 6639 1694 166 7 3 chr6 23240850 23241140 -166038414 - AluJb SINE Alu -21 291 1 315 239 37 128 chr6 23241140 23241213 -166038341 - PABL_B-int LTR ERV1 -483 6639 6578 367 313 84 34 chr6 23241246 23241569 -166037985 - PABL_B-int LTR ERV1 -1091 6665 6327 7298 241 60 70 chr6 23242810 23243013 -166036541 - HERVL32 LTR ERVL -205 3213 3009 2236 93 0 3 chr6 23243013 23243325 -166036229 + AluY SINE Alu 1 311 0 7298 241 60 70 chr6 23243325 23243341 -166036213 - HERVL32 LTR ERVL -409 3009 2994 2284 84 0 0 chr6 23243341 23243638 -166035916 + AluSg SINE Alu 1 297 -13 7298 241 60 70 chr6 23243638 23245851 -166033703 - HERVL32 LTR ERVL -424 2994 1274 312 303 49 56 chr6 23246035 23246197 -166033357 - MER5B DNA MER1_type 0 178 18 3616 51 0 7 chr6 23246199 23246650 -166032904 - LTR7 LTR ERV1 -2 448 1 2457 84 48 13 chr6 23246650 23247029 -166032525 - HERVH LTR ERV1 0 7713 7322 1465 115 18 5 chr6 23247027 23247244 -166032310 - HERVH LTR ERV1 -1894 5819 5600 * 4421 142 3 1 chr6 23247245 23247906 -166031648 - HERVH LTR ERV1 -2564 5149 4488 3598 99 0 6 chr6 23247908 23248413 -166031141 - HERVH LTR ERV1 -3720 3993 3492 1014 113 7 0 chr6 23248403 23248553 -166031001 - HERVH LTR ERV1 -4423 3290 3140 * 21467 92 8 7 chr6 23248532 23251522 -166028032 - HERVH LTR ERV1 -4718 2995 1 3455 50 23 7 chr6 23251524 23251965 -166027589 - LTR7 LTR ERV1 -2 448 1 246 331 54 34 chr6 23254311 23254459 -166025095 - L2 LINE L2 -1011 2303 2153 200 35 35 0 chr6 23254528 23254557 -166024997 + (GA)n Simple_repeat Simple_repeat 1 30 0 466 136 0 91 chr6 23255047 23255157 -166024397 + MER53 DNA DNA 1 100 -89 243 61 0 0 chr6 23257263 23257296 -166022258 + (A)n Simple_repeat Simple_repeat 1 33 0 1969 115 3 3 chr6 23257298 23257584 -166021970 + AluSx SINE Alu 1 286 -26 1983 135 0 3 chr6 23258239 23258542 -166021012 + AluSx SINE Alu 1 302 -10 422 305 14 35 chr6 23258731 23258872 -166020682 - MER5A DNA MER1_type -25 164 27 2139 110 7 10 chr6 23259122 23259432 -166020122 - AluSg SINE Alu -1 309 1 322 224 62 95 chr6 23259981 23260160 -166019394 - MER5A DNA MER1_type -7 182 10 1613 152 50 7 chr6 23261249 23261532 -166018022 - AluJo SINE Alu -17 295 1 185 328 34 42 chr6 23262497 23262616 -166016938 - L2 LINE L2 -906 2408 2291 282 345 45 14 chr6 23262619 23262842 -166016712 - L2 LINE L2 -1135 2179 1950 355 278 22 0 chr6 23263000 23263051 -166016503 - L1MC4 LINE L1 -1339 6703 6648 1913 138 10 16 chr6 23263051 23263356 -166016198 - AluSx SINE Alu -9 303 1 355 278 22 0 chr6 23263356 23263394 -166016160 - L1MC4 LINE L1 -1394 6648 6612 1478 157 82 4 chr6 23263615 23263896 -166015658 + AluJb SINE Alu 1 303 -9 705 182 17 62 chr6 23263902 23263945 -166015609 + L1MB4 LINE L1 6013 6056 -124 2215 111 0 0 chr6 23263945 23264251 -166015303 + AluSq SINE Alu 1 306 -7 705 182 17 62 chr6 23264251 23264383 -166015171 + L1MB4 LINE L1 6056 6180 0 551 295 108 49 chr6 23264558 23265096 -166014458 + L2 LINE L2 2690 3260 -12 180 0 0 0 chr6 23265097 23265117 -166014437 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 357 219 110 0 chr6 23265655 23265737 -166013817 - MIR SINE MIR -16 246 156 225 308 19 39 chr6 23265727 23265831 -166013723 - MIR3 SINE MIR -97 111 10 * 207 0 0 0 chr6 23266306 23266329 -166013225 + (A)n Simple_repeat Simple_repeat 1 23 0 1245 190 0 35 chr6 23267071 23267329 -166012225 + AluJb SINE Alu 1 249 -63 2063 185 101 7 chr6 23267641 23268068 -166011486 - MLT1C LTR MaLR 0 467 1 315 0 0 0 chr6 23268144 23268179 -166011375 + (T)n Simple_repeat Simple_repeat 1 35 0 2441 51 0 3 chr6 23269934 23270245 -166009309 - AluY SINE Alu -1 310 1 2168 165 18 48 chr6 23270575 23270699 -166008855 + L1MA10 LINE L1 5782 5908 -426 2283 110 0 0 chr6 23270699 23271009 -166008545 + AluSg SINE Alu 1 310 0 2168 165 18 48 chr6 23271009 23271321 -166008233 + L1MA10 LINE L1 5908 6205 -129 314 218 30 135 chr6 23271630 23271763 -166007791 - MLT1J LTR MaLR -256 180 35 264 103 0 0 chr6 23271868 23271907 -166007647 + Alu SINE Alu 1 39 -261 2172 96 0 0 chr6 23271907 23272208 -166007346 + AluY SINE Alu 11 311 0 183 114 0 0 chr6 23273655 23273690 -166005864 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2178 115 3 0 chr6 23273790 23274102 -166005452 + AluSq SINE Alu 1 313 0 2486 47 0 0 chr6 23274440 23274740 -166004814 + AluY SINE Alu 1 300 -11 205 258 208 34 chr6 23274873 23274945 -166004609 + L2 LINE L2 2575 2633 -681 2208 156 19 6 chr6 23274945 23275305 -166004249 + MLT1A1 LTR MaLR 1 365 0 205 258 208 34 chr6 23275305 23275410 -166004144 + L2 LINE L2 2633 2783 -531 929 183 27 32 chr6 23275972 23275991 -166003563 + MER5A DNA MER1_type 1 19 -170 2052 157 30 30 chr6 23275991 23276354 -166003200 - THE1B LTR MaLR -1 363 1 929 183 27 32 chr6 23276354 23276520 -166003034 + MER5A DNA MER1_type 19 185 -4 2168 114 3 0 chr6 23276545 23276853 -166002701 + AluSq SINE Alu 1 309 -4 346 267 145 0 chr6 23277222 23277353 -166002201 + MIR SINE MIR 43 192 -70 1056 156 5 26 chr6 23277530 23277722 -166001832 - MER53 DNA DNA 0 189 2 2152 99 0 3 chr6 23277793 23278085 -166001469 + AluSx SINE Alu 1 291 -21 1845 130 10 7 chr6 23278878 23279177 -166000377 - AluSx SINE Alu -12 300 1 1078 74 0 0 chr6 23279177 23279312 -166000242 - AluSq/x SINE Alu -177 135 1 344 279 70 16 chr6 23281352 23281481 -165998073 - MIR SINE MIR -64 198 63 317 263 141 20 chr6 23281742 23281841 -165997713 - L2 LINE L2 -7 3306 3196 358 248 191 83 chr6 23282018 23282405 -165997149 - LTR67 LTR ERVL -14 543 115 2298 101 0 3 chr6 23282570 23282867 -165996687 + AluSc SINE Alu 1 296 -13 359 82 0 33 chr6 23283129 23283190 -165996364 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 527 306 32 96 chr6 23283193 23283507 -165996047 - L2 LINE L2 -1 3271 2978 4140 134 10 5 chr6 23283544 23284172 -165995382 + MER41B LTR ERV1 5 635 0 280 234 109 31 chr6 23284376 23284504 -165995050 - L2 LINE L2 -581 2733 2596 21 23 0 47 chr6 23284550 23284567 -165994987 + AT_rich Low_complexity Low_complexity 1 17 -24 1968 134 3 3 chr6 23284567 23284851 -165994703 + AluSx SINE Alu 1 284 -28 21 23 0 47 chr6 23284851 23284876 -165994678 + AT_rich Low_complexity Low_complexity 17 41 0 229 237 140 21 chr6 23285012 23285105 -165994449 - L2 LINE L2 -961 2353 2250 25 0 0 0 chr6 23285295 23285320 -165994234 + AT_rich Low_complexity Low_complexity 1 25 0 4160 93 4 7 chr6 23286262 23286818 -165992736 + MER41A LTR ERV1 1 554 0 180 111 0 0 chr6 23287579 23287606 -165991948 + (T)n Simple_repeat Simple_repeat 1 27 0 250 294 37 18 chr6 23288471 23288580 -165990974 + MIR SINE MIR 18 128 -80 2483 90 0 0 chr6 23289086 23289397 -165990157 - AluSx SINE Alu -1 311 1 2213 118 0 0 chr6 23289895 23290191 -165989363 - AluY SINE Alu -15 296 1 282 191 238 48 chr6 23291022 23291148 -165988406 + MLT1L LTR MaLR 131 280 -335 349 316 43 11 chr6 23291215 23291402 -165988152 + MLT1L LTR MaLR 410 602 -13 1946 166 7 0 chr6 23291569 23291865 -165987689 + AluJb SINE Alu 1 298 -14 2316 143 50 31 chr6 23291889 23292083 -165987471 + MSTB LTR MaLR 1 190 -236 2462 99 3 0 chr6 23292083 23292395 -165987159 - AluSp SINE Alu 0 313 1 2316 143 50 31 chr6 23292395 23292618 -165986936 + MSTB LTR MaLR 190 426 0 2222 118 0 0 chr6 23293549 23293845 -165985709 - AluSx SINE Alu -16 296 1 753 235 40 10 chr6 23294155 23294355 -165985199 + MIR SINE MIR 36 241 -21 3936 65 2 0 chr6 23294594 23295089 -165984465 + L1PA8 LINE L1 5677 6172 0 379 233 4 41 chr6 23295156 23295271 -165984283 - HAL1b LINE L1 -806 542 444 242 204 146 58 chr6 23295670 23295710 -165983844 - L1ME2 LINE L1 -1 6163 6128 2124 115 0 16 chr6 23295710 23296014 -165983540 + AluSx SINE Alu 1 299 -13 242 204 146 58 chr6 23296014 23296076 -165983478 - L1ME2 LINE L1 -36 6128 6052 1990 96 4 18 chr6 23296087 23296359 -165983195 + AluSx SINE Alu 1 268 -44 236 343 89 7 chr6 23296687 23296990 -165982564 - L1M4 LINE L1 -2017 4129 3802 756 98 106 0 chr6 23297205 23297328 -165982226 + MER85 DNA T2_type 1 136 -3 313 241 27 33 chr6 23297348 23297454 -165982100 + MIR SINE MIR 37 145 -63 2033 121 72 0 chr6 23299558 23299848 -165979706 + AluSx SINE Alu 1 311 -1 832 266 57 4 chr6 23300090 23300334 -165979220 - MIR SINE MIR 0 262 6 31 20 0 20 chr6 23300624 23300641 -165978913 + AT_rich Low_complexity Low_complexity 1 17 -31 1716 94 5 0 chr6 23300641 23300853 -165978701 + AluSp SINE Alu 75 287 -26 31 20 0 20 chr6 23300853 23300884 -165978670 + AT_rich Low_complexity Low_complexity 17 48 0 2125 130 3 0 chr6 23301466 23301767 -165977787 + AluSq SINE Alu 12 313 0 26 30 0 0 chr6 23301959 23301992 -165977562 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr6 23302091 23302118 -165977436 + AT_rich Low_complexity Low_complexity 1 27 0 1807 180 100 90 chr6 23302720 23303037 -165976517 - MLT2B1 LTR ERVL -3 517 192 2308 116 7 0 chr6 23303037 23303347 -165976207 - AluSx SINE Alu 0 312 1 1807 180 100 90 chr6 23303347 23303541 -165976013 - MLT2B1 LTR ERVL -328 192 1 2402 97 0 0 chr6 23303850 23304159 -165975395 + AluSc SINE Alu 1 309 0 328 316 6 63 chr6 23306368 23306416 -165973138 + L2 LINE L2 2909 2958 -314 3196 44 2 17 chr6 23306416 23306822 -165972732 - L1PA7 LINE L1 -1 6153 5754 328 316 6 63 chr6 23306822 23306931 -165972623 + L2 LINE L2 2958 3057 -215 1270 255 54 26 chr6 23307096 23307559 -165971995 - L1MC4a LINE L1 -1753 6055 5580 5417 130 169 27 chr6 23307565 23308668 -165970886 - MER52C LTR ERV1 -18 1260 2 599 264 146 15 chr6 23308692 23309037 -165970517 - L1M3 LINE L1 -609 5562 5173 2315 116 33 25 chr6 23309748 23310109 -165969445 - THE1B LTR MaLR 0 364 1 1506 252 27 56 chr6 23311036 23311485 -165968069 + MLT1J LTR MaLR 72 507 -4 321 299 15 58 chr6 23312027 23312164 -165967390 - MIR3 SINE MIR -65 143 13 2055 124 0 11 chr6 23312647 23312954 -165966600 - AluSx SINE Alu 0 309 6 2224 109 0 3 chr6 23312967 23313269 -165966285 - AluSg SINE Alu -9 301 1 313 212 24 24 chr6 23313531 23313616 -165965938 - MIR3 SINE MIR -51 157 73 202 0 0 83 chr6 23314358 23314394 -165965160 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 2425 90 0 3 chr6 23314396 23314708 -165964846 - AluY SINE Alu 0 311 1 2301 104 3 0 chr6 23314711 23315008 -165964546 - AluSp SINE Alu -15 298 1 292 116 23 0 chr6 23315834 23315877 -165963677 + MSTA LTR MaLR 1 44 -382 758 116 27 0 chr6 23315877 23315989 -165963565 + AluSq/x SINE Alu 24 138 -174 2008 143 62 0 chr6 23315998 23316320 -165963234 + MSTA LTR MaLR 87 428 0 1822 148 46 11 chr6 23316560 23316844 -165962710 + AluSx SINE Alu 1 294 -18 510 289 83 63 chr6 23316870 23317233 -165962321 + HAL1 LINE L1 337 706 -1801 1479 200 31 109 chr6 23317240 23317398 -165962156 + MLT1D LTR MaLR 26 195 -310 2353 113 0 0 chr6 23317398 23317708 -165961846 - AluSq SINE Alu -3 310 1 1479 200 31 109 chr6 23317708 23317737 -165961817 + MLT1D LTR MaLR 195 225 -280 2297 95 0 3 chr6 23317737 23318032 -165961522 + AluSg SINE Alu 1 294 -16 1479 200 31 109 chr6 23318032 23318140 -165961414 + MLT1D LTR MaLR 225 340 -165 2421 99 0 0 chr6 23318140 23318443 -165961111 + AluSq SINE Alu 1 303 -10 1479 200 31 109 chr6 23318443 23318666 -165960888 + MLT1D LTR MaLR 340 505 0 379 302 126 9 chr6 23318666 23318888 -165960666 + HAL1 LINE L1 706 953 -1554 2270 99 7 0 chr6 23318935 23319237 -165960317 + AluSx SINE Alu 1 304 -8 459 242 57 50 chr6 23319269 23319373 -165960181 + HAL1 LINE L1 961 1063 -1444 1912 116 35 18 chr6 23319373 23319657 -165959897 + AluJo SINE Alu 1 289 -23 459 242 57 50 chr6 23319657 23319833 -165959721 + HAL1 LINE L1 1063 1243 -1264 389 113 0 0 chr6 23319834 23319887 -165959667 + AluSg/x SINE Alu 76 128 -172 2172 130 0 3 chr6 23319887 23320186 -165959368 + AluSx SINE Alu 1 298 -14 1671 52 0 5 chr6 23320284 23320495 -165959059 - AluY SINE Alu -5 306 97 1145 266 143 66 chr6 23320515 23321200 -165958354 + HAL1 LINE L1 1473 2210 -297 1713 229 122 12 chr6 23321232 23321726 -165957828 + MLT1H LTR MaLR 1 548 -1 180 111 0 0 chr6 23321726 23321753 -165957801 + (TG)n Simple_repeat Simple_repeat 2 28 0 1342 93 71 0 chr6 23321812 23321994 -165957560 - AluSg/x SINE Alu -10 302 108 337 247 21 0 chr6 23322952 23323045 -165956509 - MIR3 SINE MIR -6 202 108 322 294 94 12 chr6 23324018 23324188 -165955366 - MIR SINE MIR -20 242 59 5708 105 13 5 chr6 23324512 23325340 -165954214 + L1PA16 LINE L1 5332 6166 0 2621 60 0 13 chr6 23325453 23325767 -165953787 - AluY SINE Alu -1 310 1 1815 177 16 47 chr6 23326210 23326733 -165952821 + L1MB2 LINE L1 5647 6125 -46 227 143 0 41 chr6 23326785 23326834 -165952720 + L1MB5 LINE L1 6096 6142 -32 485 153 0 0 chr6 23326834 23326906 -165952648 + AluJ/FRAM SINE Alu 221 292 -20 2043 128 4 0 chr6 23327051 23327332 -165952222 - AluSx SINE Alu -13 299 18 2482 42 0 3 chr6 23328219 23328536 -165951018 + AluY SINE Alu 1 316 0 1506 201 108 31 chr6 23328621 23329047 -165950507 - MLT1C LTR MaLR -2 465 17 195 263 81 61 chr6 23329297 23329396 -165950158 - MIR SINE MIR -90 118 18 1741 157 31 20 chr6 23330489 23330782 -165948772 - AluJo SINE Alu -16 296 1 401 337 121 8 chr6 23331367 23331723 -165947831 - L2 LINE L2 -941 2373 1978 200 247 0 110 chr6 23331823 23331896 -165947658 + L2 LINE L2 2244 2308 -1006 1188 210 14 0 chr6 23332192 23332411 -165947143 - MER58A DNA MER1_type -2 222 1 207 139 0 0 chr6 23332625 23332661 -165946893 + (TG)n Simple_repeat Simple_repeat 1 36 0 1616 174 10 41 chr6 23332661 23332955 -165946599 - AluJo SINE Alu -27 285 1 2401 100 3 0 chr6 23332976 23333285 -165946269 - AluSx SINE Alu -2 310 1 2094 113 19 10 chr6 23334578 23334887 -165944667 - AluSx SINE Alu 0 312 1 2241 118 0 0 chr6 23335430 23335735 -165943819 - AluSx SINE Alu -7 305 1 696 167 161 6 chr6 23335742 23335922 -165943632 - L1MD3 LINE L1 0 7995 7788 867 158 12 18 chr6 23337494 23337658 -165941896 + L1MB3 LINE L1 6021 6183 0 253 245 147 59 chr6 23337708 23337810 -165941744 + L2 LINE L2 3183 3293 -20 264 244 126 50 chr6 23340872 23340991 -165938563 + L3 LINE CR1 1375 1502 -75 1937 252 50 33 chr6 23341022 23341242 -165938312 + MLT1E LTR MaLR 2 217 -376 3713 114 32 31 chr6 23341242 23341666 -165937888 + MER41C LTR ERV1 1 423 -131 2049 133 0 41 chr6 23341666 23341983 -165937571 - AluSx SINE Alu -8 304 1 2456 73 0 3 chr6 23341988 23342290 -165937264 - AluY SINE Alu -10 301 1 3713 114 32 31 chr6 23342290 23342412 -165937142 + MER41C LTR ERV1 426 554 0 1937 252 50 33 chr6 23342412 23342770 -165936784 + MLT1E LTR MaLR 217 590 -3 2267 140 25 68 chr6 23344094 23344538 -165935016 - L1MB5 LINE L1 -2 6172 5748 208 353 29 0 chr6 23346415 23346483 -165933071 - L3 LINE CR1 -84 1493 1424 1653 184 110 60 chr6 23346633 23346977 -165932577 - MLT1C LTR MaLR -8 459 87 2165 147 0 0 chr6 23346977 23347289 -165932265 - AluSx SINE Alu 0 312 1 1653 184 110 60 chr6 23347289 23347379 -165932175 - MLT1C LTR MaLR -380 87 3 2196 114 30 0 chr6 23349047 23349346 -165930208 + AluSc SINE Alu 1 308 -1 2231 61 0 31 chr6 23349346 23349667 -165929887 + AluY SINE Alu 1 313 0 798 258 103 66 chr6 23349681 23349755 -165929799 - L1ME4a LINE L1 -11 6110 6040 2319 77 10 17 chr6 23349755 23350053 -165929501 - AluSg1 SINE Alu -13 296 1 798 258 103 66 chr6 23350053 23350404 -165929150 - L1ME4a LINE L1 -81 6040 5669 1513 186 37 77 chr6 23350654 23350844 -165928710 - MLT1B LTR MaLR 0 390 223 2946 138 17 0 chr6 23350844 23351264 -165928290 - MSTC LTR MaLR -1 427 1 1513 186 37 77 chr6 23351264 23351476 -165928078 - MLT1B LTR MaLR -167 223 4 242 214 0 0 chr6 23351627 23351683 -165927871 - HAL1 LINE L1 -2 2505 2450 582 208 150 77 chr6 23351724 23352034 -165927520 - MLT1E1 LTR MaLR -263 330 43 935 259 95 45 chr6 23352341 23352820 -165926734 - HAL1 LINE L1 -973 1534 1026 4288 110 64 0 chr6 23352820 23353395 -165926159 + LTR9 LTR ERV1 1 612 0 935 259 95 45 chr6 23353395 23353429 -165926125 - HAL1 LINE L1 -1481 1026 995 245 343 30 49 chr6 23353563 23353828 -165925726 - HAL1 LINE L1 -2111 396 137 2379 87 0 10 chr6 23355958 23356268 -165923286 + AluSx SINE Alu 1 307 -5 225 0 0 0 chr6 23356367 23356392 -165923162 + (TC)n Simple_repeat Simple_repeat 2 26 0 247 276 81 65 chr6 23356693 23356816 -165922738 + MIR3 SINE MIR 84 208 0 466 178 0 19 chr6 23357852 23357959 -165921595 + CT-rich Low_complexity Low_complexity 2 106 0 887 278 45 36 chr6 23358865 23359410 -165920144 + L1MEc LINE L1 1774 2279 -3936 3646 142 42 30 chr6 23359436 23359638 -165919916 + L1MA7 LINE L1 5620 5818 -473 2246 104 0 3 chr6 23359638 23359945 -165919609 + AluY SINE Alu 2 307 -4 3646 142 42 30 chr6 23359945 23360083 -165919471 + L1MA7 LINE L1 5818 5953 -338 2531 55 0 13 chr6 23360083 23360395 -165919159 + AluY SINE Alu 1 308 -3 3646 142 42 30 chr6 23360395 23360717 -165918837 + L1MA7 LINE L1 5953 6291 0 7286 208 81 76 chr6 23360741 23361233 -165918321 + L1MB8 LINE L1 2983 3471 -2707 2150 115 121 0 chr6 23361233 23361555 -165917999 - MER46B DNA MER2_type 0 236 1 7286 208 81 76 chr6 23361555 23363347 -165916207 + L1MB8 LINE L1 3471 5284 -894 234 0 0 0 chr6 23363347 23363373 -165916181 + (TC)n Simple_repeat Simple_repeat 1 26 0 7286 208 81 76 chr6 23363373 23364267 -165915287 + L1MB8 LINE L1 5284 6172 -6 1878 158 0 11 chr6 23364278 23364588 -165914966 - AluSx SINE Alu 0 307 1 541 307 52 44 chr6 23365385 23365561 -165913993 - MARNA DNA Mariner -17 569 396 1816 122 0 8 chr6 23365561 23365815 -165913739 - AluSg SINE Alu -36 274 23 541 307 52 44 chr6 23365815 23366000 -165913554 - MARNA DNA Mariner -190 396 205 1907 163 0 7 chr6 23366029 23366324 -165913230 - AluJo SINE Alu -19 293 1 180 0 0 0 chr6 23366659 23366679 -165912875 + (TA)n Simple_repeat Simple_repeat 1 20 0 2305 128 6 0 chr6 23366685 23367013 -165912541 - L1PA16 LINE L1 -9 6157 5828 908 202 0 16 chr6 23367014 23367197 -165912357 + L1P4 LINE L1 5611 5790 -376 2229 121 3 0 chr6 23367889 23368195 -165911359 - AluSx SINE Alu -5 307 1 1897 146 7 7 chr6 23369851 23370146 -165909408 - AluJo SINE Alu -17 295 1 199 333 123 0 chr6 23370266 23370347 -165909207 + L2 LINE L2 3206 3296 -17 653 302 27 18 chr6 23370407 23370629 -165908925 + MIR SINE MIR 5 228 -34 797 154 79 106 chr6 23371619 23371925 -165907629 + MLT1C LTR MaLR 1 269 -198 241 213 0 0 chr6 23372079 23372126 -165907428 - L2 LINE L2 -5 3267 3221 338 307 37 12 chr6 23372136 23372299 -165907255 - L2 LINE L2 -2660 654 488 1000 204 11 11 chr6 23372340 23372526 -165907028 - MER5A DNA MER1_type 0 189 4 1605 159 22 57 chr6 23372557 23372871 -165906683 - AluJo SINE Alu -9 303 1 1828 162 97 43 chr6 23372958 23373328 -165906226 + MLT1B LTR MaLR 1 390 0 248 199 103 73 chr6 23373469 23373605 -165905949 - L1MEd LINE L1 -5932 187 48 370 323 10 0 chr6 23373736 23373835 -165905719 - MIR SINE MIR -59 149 50 1975 138 0 7 chr6 23373904 23374202 -165905352 + AluJb SINE Alu 1 296 -16 23 0 0 0 chr6 23374202 23374225 -165905329 + AT_rich Low_complexity Low_complexity 1 23 0 398 217 56 13 chr6 23425358 23425556 -165853998 - MLT1D LTR MaLR -2 503 250 2391 97 0 0 chr6 23425599 23425898 -165853656 - AluSx SINE Alu -13 299 1 1519 218 19 22 chr6 23425899 23426266 -165853288 - L1P LINE L1 -1117 5029 4664 4245 115 25 8 chr6 23426266 23426907 -165852647 + L1PA15 LINE L1 5362 6013 -152 949 95 0 0 chr6 23426908 23427034 -165852520 + AluSp/q SINE Alu 185 310 -3 917 244 91 5 chr6 23427035 23427444 -165852110 + L1 LINE L1 4955 5398 -748 2255 161 7 27 chr6 23427633 23428044 -165851510 + MER57A LTR ERV1 1 403 0 231 247 39 13 chr6 23428672 23428749 -165850805 + MER65A LTR ERV1 257 335 -110 780 158 47 0 chr6 23428867 23428994 -165850560 + LTR54 LTR ERV1 67 199 -311 22 0 0 0 chr6 23430131 23430153 -165849401 + AT_rich Low_complexity Low_complexity 1 22 0 201 147 0 0 chr6 23430222 23430256 -165849298 + (CATA)n Simple_repeat Simple_repeat 3 36 0 2011 113 21 11 chr6 23430262 23430545 -165849009 - AluSx SINE Alu -26 286 1 2372 80 0 7 chr6 23430545 23430845 -165848709 - AluSq SINE Alu -15 298 1 743 311 29 10 chr6 23430852 23431161 -165848393 - L1MC4a LINE L1 -1983 5825 5511 219 171 0 0 chr6 23431603 23431644 -165847910 + L2 LINE L2 3272 3312 -1 447 271 76 3 chr6 23432429 23432579 -165846975 - MIR3 SINE MIR -29 179 21 282 160 20 0 chr6 23432673 23432723 -165846831 - L1ME3A LINE L1 -105 6065 6015 916 181 11 17 chr6 23432891 23433068 -165846486 - AluJo SINE Alu -132 180 5 339 284 0 12 chr6 23433072 23433153 -165846401 - LTR8A LTR ERV1 -361 366 287 1701 197 3 16 chr6 23433283 23433420 -165846134 + AluJb SINE Alu 1 138 -174 2298 118 0 6 chr6 23433420 23433734 -165845820 + AluSx SINE Alu 1 312 0 1701 197 3 16 chr6 23433734 23433911 -165845643 + AluJb SINE Alu 138 311 -1 1640 161 149 14 chr6 23434110 23434465 -165845089 - MER61A-int LTR ERV1 -4812 405 3 1676 190 61 9 chr6 23434467 23434793 -165844761 - MER61A LTR ERV1 0 343 1 1007 163 150 26 chr6 23434793 23435026 -165844528 + AluJb SINE Alu 31 292 -20 1810 53 8 8 chr6 23435730 23435973 -165843581 - AluY SINE Alu -30 281 39 1013 81 0 7 chr6 23435974 23436110 -165843444 - AluSq/x SINE Alu -178 135 1 606 263 69 65 chr6 23439010 23439257 -165840297 - MIR SINE MIR -10 252 5 686 255 11 27 chr6 23439336 23439520 -165840034 + MLT1J1 LTR MaLR 4 184 -262 2284 121 34 14 chr6 23439567 23439923 -165839631 + THE1B LTR MaLR 1 363 -1 325 191 48 0 chr6 23440102 23440165 -165839389 - LTR33A LTR ERVL 0 523 458 548 208 26 106 chr6 23440355 23440620 -165838934 - L1MC4a LINE L1 -2311 5497 5254 225 186 0 0 chr6 23440959 23441002 -165838552 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 271 270 11 11 chr6 23441183 23441272 -165838282 - L1MC4a LINE L1 -1326 4820 4732 675 292 118 37 chr6 23441660 23442043 -165837511 + MLT1J2 LTR MaLR 3 416 -34 2359 155 16 3 chr6 23442071 23442457 -165837097 + Tigger1 DNA MER2_type 24 414 -2004 505 146 0 0 chr6 23444479 23444561 -165834993 + L1P LINE L1 4480 4561 -1585 360 60 0 0 chr6 23444561 23444608 -165834946 + L1PA7 LINE L1 6104 6153 -1 1156 115 50 6 chr6 23444608 23444788 -165834766 + L1PA8A LINE L1 5937 6126 -5 2678 51 12 0 chr6 23444890 23445221 -165834333 - L1PA5 LINE L1 -4 6150 5816 1161 208 13 40 chr6 23445221 23445524 -165834030 + pTR5 LTR ERV1 744 1038 -1400 197 273 0 0 chr6 23447141 23447196 -165832358 + L3b LINE CR1 1383 1437 -146 1023 110 0 78 chr6 23447382 23447573 -165831981 - AluSp SINE Alu 0 313 138 2086 110 3 0 chr6 23448629 23448929 -165830625 - AluSp SINE Alu -12 301 1 1452 193 27 0 chr6 23449325 23449621 -165829933 - AluSx SINE Alu -4 308 5 212 291 0 38 chr6 23449755 23449834 -165829720 - MIR SINE MIR -75 133 58 759 156 7 21 chr6 23450448 23450589 -165828965 - L1MB3 LINE L1 -1 6182 6044 4005 124 17 10 chr6 23450848 23451482 -165828072 - MER39B LTR ERV1 0 625 1 7524 128 4 6 chr6 23451975 23453100 -165826454 - MER61-int LTR ERV1 -430 4787 3665 7839 115 80 1 chr6 23453200 23454723 -165824831 + L1P3 LINE L1 3943 5592 -562 388 115 33 0 chr6 23454827 23454888 -165824666 + AluS SINE Alu 231 293 -7 230 239 80 45 chr6 23455009 23455097 -165824457 - MIR SINE MIR -62 200 110 189 178 0 0 chr6 23455204 23455249 -165824305 + (CTAG)n Simple_repeat Simple_repeat 1 45 0 26 30 0 0 chr6 23455641 23455674 -165823880 + AT_rich Low_complexity Low_complexity 1 33 0 494 285 39 43 chr6 23456256 23456463 -165823091 - MIR SINE MIR 0 262 57 257 299 0 31 chr6 23457114 23457240 -165822314 - AluSp/q SINE Alu 0 314 192 1210 215 16 8 chr6 23457784 23458030 -165821524 - AluJo SINE Alu -30 282 35 539 125 71 18 chr6 23458413 23458533 -165821021 + LTR49-int LTR ERV1 3118 4384 -1883 805 195 40 49 chr6 23458574 23458800 -165820754 + LTR49-int LTR ERV1 4567 4790 -1541 916 148 14 0 chr6 23458801 23458943 -165820611 - AluJb SINE Alu -25 287 144 279 0 0 0 chr6 23459923 23459954 -165819600 + (CA)n Simple_repeat Simple_repeat 2 32 0 1462 182 3 13 chr6 23459983 23460285 -165819269 - AluSq SINE Alu -14 299 1 345 102 0 0 chr6 23461448 23461507 -165818047 + (TTTTG)n Simple_repeat Simple_repeat 3 61 0 420 219 0 0 chr6 23462086 23462168 -165817386 - AluJb SINE Alu -52 260 179 27 0 0 0 chr6 23462189 23462216 -165817338 + AT_rich Low_complexity Low_complexity 1 27 0 1970 159 38 9 chr6 23462290 23462635 -165816919 + MLT1A1 LTR MaLR 11 365 0 462 158 42 0 chr6 23462635 23462730 -165816824 - L1M4 LINE L1 -811 5335 5237 359 154 0 46 chr6 23462917 23462982 -165816572 + AluJ/FRAM SINE Alu 231 292 -10 503 156 0 0 chr6 23463241 23463337 -165816217 + AluSg/x SINE Alu 214 309 0 458 268 49 33 chr6 23463390 23463573 -165815981 + LTR67 LTR ERVL 372 557 0 264 248 13 131 chr6 23463608 23463761 -165815793 - L2 LINE L2 -222 3050 2916 1150 139 0 0 chr6 23464057 23464230 -165815324 - AluJb SINE Alu -10 302 130 1503 190 3 19 chr6 23464567 23464878 -165814676 + AluJo SINE Alu 3 308 -4 2898 186 6 40 chr6 23467107 23467642 -165811912 - L1MCa LINE L1 -3259 3167 2616 2053 142 0 0 chr6 23467642 23467953 -165811601 + AluSq SINE Alu 1 311 -2 2898 186 6 40 chr6 23467953 23467989 -165811565 - L1MCa LINE L1 -3810 2616 2616 2305 93 0 3 chr6 23467989 23468299 -165811255 + AluSx SINE Alu 2 310 -2 2898 186 6 40 chr6 23468299 23468351 -165811203 - L1MCa LINE L1 -3810 2616 2564 557 212 159 59 chr6 23468518 23468753 -165810801 - MLT1H1 LTR MaLR -11 544 250 698 229 22 18 chr6 23469147 23469370 -165810184 + MER20B DNA MER1_type 544 767 -16 186 283 0 0 chr6 23469737 23469783 -165809771 + L2 LINE L2 3264 3309 -4 279 0 0 0 chr6 23471769 23471800 -165807754 + (T)n Simple_repeat Simple_repeat 1 31 0 530 208 77 24 chr6 23473685 23473853 -165805701 + MER104 DNA MER2_type 1 177 -3 1801 125 27 27 chr6 23474835 23475132 -165804422 - AluSx SINE Alu -15 297 1 410 228 118 24 chr6 23475234 23475361 -165804193 - MIR SINE MIR -7 255 117 239 170 0 19 chr6 23476251 23476304 -165803250 + (CA)n Simple_repeat Simple_repeat 1 52 0 198 71 0 0 chr6 23477069 23477097 -165802457 + (GA)n Simple_repeat Simple_repeat 1 28 0 213 250 0 0 chr6 23477812 23477904 -165801650 + (CGG)n Simple_repeat Simple_repeat 1 92 0 212 241 13 13 chr6 23478023 23478102 -165801452 + (CCG)n Simple_repeat Simple_repeat 1 79 0 209 123 0 53 chr6 23478473 23478530 -165801024 + (TCC)n Simple_repeat Simple_repeat 1 54 0 290 221 12 23 chr6 23478802 23478888 -165800666 + A-rich Low_complexity Low_complexity 5 89 0 297 75 0 0 chr6 23479766 23479806 -165799748 + (A)n Simple_repeat Simple_repeat 1 40 0 313 193 272 9 chr6 23480240 23480354 -165799200 - L1MCa LINE L1 -4065 2361 2218 22 0 0 0 chr6 23480406 23480428 -165799126 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 23483587 23483613 -165795941 + AT_rich Low_complexity Low_complexity 1 26 0 2171 110 0 0 chr6 23483629 23483928 -165795626 + AluSx SINE Alu 1 299 -13 268 429 30 5 chr6 23484560 23484763 -165794791 + MIR SINE MIR 47 254 -8 204 235 161 12 chr6 23484764 23484845 -165794709 + MIR SINE MIR 157 249 -13 365 288 159 18 chr6 23485261 23485424 -165794130 + MER5A DNA MER1_type 1 186 -3 246 311 93 34 chr6 23485447 23485598 -165793956 - MIR SINE MIR -58 150 28 2020 133 3 10 chr6 23485763 23486064 -165793490 + AluSq SINE Alu 1 299 -14 279 0 0 0 chr6 23486093 23486124 -165793430 + (TG)n Simple_repeat Simple_repeat 2 32 0 2159 103 3 27 chr6 23488453 23488589 -165790965 + AluSx SINE Alu 1 139 -173 2149 53 0 8 chr6 23488589 23488851 -165790703 + AluY SINE Alu 39 298 -13 2378 98 0 0 chr6 23488853 23489150 -165790404 + AluSc SINE Alu 1 297 -12 2159 103 3 27 chr6 23489150 23489311 -165790243 + AluSx SINE Alu 140 294 -18 1678 163 32 4 chr6 23490539 23490816 -165788738 - AluJb SINE Alu -26 286 2 2261 90 10 0 chr6 23490887 23491177 -165788377 + AluSp SINE Alu 1 293 -20 2280 75 7 0 chr6 23491188 23491492 -165788062 + AluSc SINE Alu 1 306 0 1333 186 80 22 chr6 23491616 23491927 -165787627 + MER61B LTR ERV1 1 421 -4 1501 116 0 18 chr6 23491927 23492152 -165787402 - pTR5 LTR ERV1 -2046 392 172 308 281 10 0 chr6 23492155 23492251 -165787303 - LTR30 LTR ERV1 -80 642 546 4077 128 196 24 chr6 23492257 23493245 -165786309 - pTR5 LTR ERV1 -417 2021 719 450 0 0 0 chr6 23493591 23493641 -165785913 + (CATAA)n Simple_repeat Simple_repeat 3 52 0 22 35 0 0 chr6 23493749 23493778 -165785776 + AT_rich Low_complexity Low_complexity 1 29 0 2331 88 3 3 chr6 23493851 23494147 -165785407 - AluSp SINE Alu -17 296 1 706 170 0 28 chr6 23495677 23495818 -165783736 - MER96B DNA MER1_type? -182 235 99 2175 93 25 0 chr6 23495818 23496098 -165783456 + AluSx SINE Alu 1 287 -25 239 73 59 29 chr6 23496105 23496173 -165783381 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 234 232 18 0 chr6 23496188 23496244 -165783310 + MER96B DNA MER1_type? 321 377 -40 309 299 10 99 chr6 23496412 23496613 -165782941 - MER5A DNA MER1_type 0 189 7 333 0 0 0 chr6 23498299 23498336 -165781218 + (CA)n Simple_repeat Simple_repeat 2 38 0 2175 120 7 7 chr6 23499257 23499566 -165779988 - AluSx SINE Alu -3 309 1 414 208 201 19 chr6 23499715 23499751 -165779803 - MIR SINE MIR -9 253 225 204 40 0 0 chr6 23499751 23499776 -165779778 + (TA)n Simple_repeat Simple_repeat 1 25 0 414 208 201 19 chr6 23499776 23499898 -165779656 - MIR SINE MIR -37 225 66 1683 152 61 10 chr6 23499903 23500200 -165779354 + AluJb SINE Alu 1 312 0 1708 161 41 21 chr6 23500374 23500665 -165778889 - AluJb SINE Alu -15 297 1 2153 130 0 7 chr6 23501021 23501322 -165778232 + AluSx SINE Alu 1 299 -13 2325 96 3 3 chr6 23501926 23502227 -165777327 + AluSx SINE Alu 1 301 -11 4348 140 103 14 chr6 23502815 23503708 -165775846 - MER52C LTR ERV1 0 1278 1 1586 181 0 28 chr6 23503911 23504199 -165775355 + AluJo SINE Alu 2 281 -31 189 0 0 0 chr6 23504202 23504223 -165775331 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 519 240 96 7 chr6 23504344 23504490 -165775064 - MLT1L LTR MaLR -36 579 421 2170 132 0 7 chr6 23504675 23504978 -165774576 - AluSx SINE Alu -11 301 1 2282 114 3 0 chr6 23504979 23505278 -165774276 - AluSp SINE Alu -7 306 7 2429 80 0 3 chr6 23505409 23505710 -165773844 + AluY SINE Alu 3 302 -9 2251 123 0 3 chr6 23505935 23506243 -165773311 + AluSx SINE Alu 1 307 -5 673 309 79 70 chr6 23506678 23506772 -165772782 + L2 LINE L2 1841 1933 -1381 1853 176 0 13 chr6 23506772 23507079 -165772475 - AluJo SINE Alu -9 303 1 673 309 79 70 chr6 23507079 23507722 -165771832 + L2 LINE L2 1933 2588 -726 2495 60 0 7 chr6 23507722 23508024 -165771530 + AluY SINE Alu 1 300 -11 673 309 79 70 chr6 23508024 23508096 -165771458 + L2 LINE L2 2588 2658 -656 2253 104 3 3 chr6 23508143 23508440 -165771114 - AluSx SINE Alu -15 297 1 1795 157 54 7 chr6 23508442 23508736 -165770818 - AluJo SINE Alu -4 308 1 2054 116 0 0 chr6 23508828 23509104 -165770450 + AluSx SINE Alu 35 310 -2 2502 65 0 10 chr6 23510090 23510398 -165769156 + AluY SINE Alu 1 305 -6 1696 97 124 16 chr6 23510713 23510970 -165768584 + AluSg SINE Alu 1 285 -25 2202 66 30 20 chr6 23511878 23512180 -165767374 - AluY SINE Alu -5 306 2 614 318 138 17 chr6 23512237 23512387 -165767167 + L2 LINE L2 2434 2564 -749 2354 87 0 10 chr6 23512387 23512698 -165766856 - AluSc SINE Alu -1 308 1 614 318 138 17 chr6 23512698 23513044 -165766510 + L2 LINE L2 2564 3002 -311 253 297 0 69 chr6 23513163 23513264 -165766290 + L2 LINE L2 3218 3311 -2 214 229 0 29 chr6 23513321 23513391 -165766163 + (TA)n Simple_repeat Simple_repeat 2 69 0 2596 55 3 3 chr6 23513487 23513798 -165765756 + AluY SINE Alu 1 311 0 24 0 0 0 chr6 23514269 23514293 -165765261 + AT_rich Low_complexity Low_complexity 1 24 0 545 194 70 74 chr6 23514293 23514407 -165765147 - MER113 DNA MER1_type? -277 244 131 2701 36 0 3 chr6 23514407 23514715 -165764839 + AluY SINE Alu 1 307 -4 440 35 17 0 chr6 23514715 23514773 -165764781 + (TA)n Simple_repeat Simple_repeat 2 60 0 2273 110 7 0 chr6 23514780 23515079 -165764475 + AluSp SINE Alu 1 301 -12 545 194 70 74 chr6 23515079 23515197 -165764357 - MER113 DNA MER1_type? -395 126 4 714 234 122 11 chr6 23515216 23515494 -165764060 - MER5C DNA MER1_type -15 309 1 2128 131 0 3 chr6 23515653 23515951 -165763603 - AluSx SINE Alu -15 297 1 1702 109 4 0 chr6 23516023 23516287 -165763267 + AluSg/x SINE Alu 69 312 0 1237 117 0 0 chr6 23516463 23516634 -165762920 + AluSg/x SINE Alu 134 304 -8 2104 125 3 0 chr6 23516924 23517221 -165762333 - AluSq SINE Alu -15 298 1 2169 126 13 0 chr6 23517882 23518191 -165761363 - AluSq SINE Alu 0 313 1 1585 176 11 21 chr6 23518465 23518749 -165760805 + AluJb SINE Alu 1 281 -31 229 0 26 53 chr6 23518752 23518790 -165760764 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2553 68 0 0 chr6 23518939 23519246 -165760308 + AluSc SINE Alu 1 307 -2 2302 108 0 3 chr6 23519251 23519557 -165759997 + AluSg SINE Alu 1 305 -5 21 0 0 0 chr6 23519830 23519851 -165759703 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr6 23520496 23520524 -165759030 + AT_rich Low_complexity Low_complexity 1 28 0 450 53 0 0 chr6 23520528 23520585 -165758969 + (TA)n Simple_repeat Simple_repeat 2 58 0 2085 117 13 13 chr6 23520587 23520895 -165758659 - AluSg SINE Alu 0 310 3 1835 134 42 3 chr6 23520899 23521183 -165758371 - AluJb SINE Alu -17 295 1 2204 114 0 10 chr6 23521398 23521697 -165757857 - AluSg SINE Alu -13 297 2 551 274 71 63 chr6 23522338 23522567 -165756987 - L1M4 LINE L1 -1983 4163 3937 1883 86 4 0 chr6 23522567 23522832 -165756722 - AluSc SINE Alu 0 312 47 551 274 71 63 chr6 23522832 23523108 -165756446 - L1M4 LINE L1 -2209 3937 3653 2505 67 0 16 chr6 23523130 23523444 -165756110 - AluY SINE Alu -2 309 1 2433 100 0 0 chr6 23523454 23523764 -165755790 - AluSg SINE Alu 0 310 1 871 191 22 16 chr6 23523764 23523939 -165755615 - AluJo SINE Alu -14 298 120 734 170 7 0 chr6 23524015 23524162 -165755392 + CT-rich Low_complexity Low_complexity 1 148 0 1483 131 0 0 chr6 23524162 23524368 -165755186 - AluSg/x SINE Alu -10 300 95 10286 113 26 20 chr6 23524368 23525319 -165754235 + Tigger1 DNA MER2_type 465 1408 -1010 2315 90 0 0 chr6 23525319 23525618 -165753936 - AluY SINE Alu -12 299 1 10286 113 26 20 chr6 23525618 23525882 -165753672 + Tigger1 DNA MER2_type 1408 1669 -749 2141 110 28 0 chr6 23525882 23526172 -165753382 + AluSg SINE Alu 1 298 -12 10286 113 26 20 chr6 23526172 23526538 -165753016 + Tigger1 DNA MER2_type 1669 2058 -360 837 125 16 0 chr6 23526538 23526666 -165752888 - AluSg SINE Alu -7 302 173 952 85 0 0 chr6 23526666 23526784 -165752770 - AluSg SINE Alu -192 118 1 2354 114 29 0 chr6 23526784 23527126 -165752428 + Tigger1 DNA MER2_type 2064 2415 -3 1007 233 8 16 chr6 23527261 23527506 -165752048 - L1M4 LINE L1 -1191 4955 4713 2224 97 30 0 chr6 23527799 23528097 -165751457 + AluSq SINE Alu 1 307 -6 366 302 181 25 chr6 23528119 23528440 -165751114 - L1MDa LINE L1 -4588 1541 1171 36 17 0 35 chr6 23528486 23528526 -165751028 + AT_rich Low_complexity Low_complexity 1 40 -16 2165 116 7 0 chr6 23528526 23528818 -165750736 + AluSg1 SINE Alu 1 294 -15 36 17 0 35 chr6 23528818 23528835 -165750719 + AT_rich Low_complexity Low_complexity 40 56 0 332 281 82 41 chr6 23528854 23528939 -165750615 - L1MDa LINE L1 -4952 1167 1087 2038 141 0 0 chr6 23528939 23529245 -165750309 - AluSg SINE Alu -4 306 1 332 281 82 41 chr6 23529245 23529355 -165750199 - L1MDa LINE L1 -5032 1087 964 484 264 39 8 chr6 23529457 23529586 -165749968 + LTR16C LTR ERVL 151 283 -208 403 194 28 0 chr6 23529609 23529681 -165749873 - AluS SINE Alu -235 76 3 274 305 146 37 chr6 23530043 23530236 -165749318 + MIR SINE MIR 38 249 -13 1786 96 115 11 chr6 23530929 23531199 -165748355 - AluSg SINE Alu -12 298 1 1127 127 16 16 chr6 23531199 23531380 -165748174 + L1MB3 LINE L1 5999 6182 -1 189 0 0 0 chr6 23531500 23531521 -165748033 + (T)n Simple_repeat Simple_repeat 1 21 0 2115 120 3 31 chr6 23531847 23532028 -165747526 - AluSq SINE Alu -5 308 138 2468 49 0 13 chr6 23532028 23532333 -165747221 - AluY SINE Alu -10 301 1 2115 120 3 31 chr6 23532333 23532468 -165747086 - AluSq SINE Alu -175 138 1 292 335 135 16 chr6 23533623 23533927 -165745627 + L3 LINE CR1 496 835 -742 372 259 0 12 chr6 23533993 23534078 -165745476 - L2 LINE L2 -8 3264 3181 2506 114 7 88 chr6 23534117 23534375 -165745179 - MSTA LTR MaLR 0 428 223 2212 86 7 0 chr6 23534375 23534653 -165744901 - AluSp SINE Alu -13 300 21 2506 114 7 88 chr6 23534653 23534859 -165744695 - MSTA LTR MaLR -205 223 2 1241 194 28 127 chr6 23535331 23535593 -165743961 - MLT1B LTR MaLR 0 390 177 2535 59 0 3 chr6 23535593 23535896 -165743658 - AluY SINE Alu -9 302 1 1241 194 28 127 chr6 23535896 23536020 -165743534 - MLT1B LTR MaLR -213 177 42 1839 207 65 59 chr6 23536023 23536516 -165743038 + MLT2B3 LTR ERVL 5 500 -54 4414 105 25 6 chr6 23536526 23537155 -165742399 - LTR9B LTR ERV1 -2 642 2 462 73 12 85 chr6 23537155 23537215 -165742339 + MLT2A2 LTR ERVL 400 453 0 317 128 0 0 chr6 23537215 23537262 -165742292 - MLT1B LTR MaLR -325 49 3 259 274 77 95 chr6 23537263 23537538 -165742016 - L2 LINE L2 -691 2623 2359 2287 84 0 26 chr6 23537538 23537847 -165741707 + AluSx SINE Alu 12 312 0 259 274 77 95 chr6 23537847 23538067 -165741487 - L2 LINE L2 -955 2359 2137 2166 134 0 0 chr6 23538145 23538451 -165741103 + AluSx SINE Alu 1 306 -6 1948 143 26 10 chr6 23539991 23540298 -165739256 + AluJb SINE Alu 1 312 0 181 261 102 83 chr6 23540552 23540676 -165738878 - MIR SINE MIR -26 236 107 2005 118 0 85 chr6 23540676 23540811 -165738743 + AluSx SINE Alu 1 146 -166 2511 47 0 31 chr6 23540811 23541132 -165738422 + AluY SINE Alu 1 311 0 2005 118 0 85 chr6 23541132 23541327 -165738227 + AluSx SINE Alu 146 303 -9 181 261 102 83 chr6 23541327 23541359 -165738195 - MIR SINE MIR -155 107 77 228 320 70 51 chr6 23541452 23541608 -165737946 - L2 LINE L2 -190 3082 2924 2602 42 0 10 chr6 23541899 23542206 -165737348 - AluY SINE Alu -7 304 1 263 248 64 28 chr6 23542365 23542474 -165737080 - MIR SINE MIR -26 236 124 2361 93 0 13 chr6 23542659 23542971 -165736583 - AluSg SINE Alu -2 308 1 1282 170 15 104 chr6 23542995 23543174 -165736380 - AluJo SINE Alu -6 306 169 192 77 0 0 chr6 23543174 23543200 -165736354 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1282 170 15 104 chr6 23543200 23543356 -165736198 - AluJo SINE Alu -143 169 1 222 37 0 0 chr6 23543358 23543385 -165736169 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2355 60 7 0 chr6 23543387 23543670 -165735884 - AluY SINE Alu -26 285 1 507 50 0 0 chr6 23543671 23543731 -165735823 - AluSq/x SINE Alu -168 145 86 1103 178 35 0 chr6 23543733 23543930 -165735624 - AluSx SINE Alu -108 204 1 335 296 56 0 chr6 23544155 23544263 -165735291 - MLT1I LTR MaLR -6 403 290 822 238 48 19 chr6 23544309 23544519 -165735035 - MLT1I LTR MaLR -192 217 2 2486 87 0 0 chr6 23544685 23544995 -165734559 + AluSx SINE Alu 1 310 -2 897 211 43 142 chr6 23545472 23545775 -165733779 - LTR16C LTR ERVL -2 489 240 2185 123 0 3 chr6 23545775 23546075 -165733479 - AluSx SINE Alu -13 299 1 897 211 43 142 chr6 23546075 23546208 -165733346 - LTR16C LTR ERVL -251 240 96 196 183 17 17 chr6 23549161 23549221 -165730333 + GA-rich Low_complexity Low_complexity 2 61 0 2359 95 10 0 chr6 23550613 23550917 -165728637 + AluSx SINE Alu 1 307 -5 262 311 20 22 chr6 23552528 23552668 -165726886 + MIR SINE MIR 63 199 -9 2349 94 3 0 chr6 23552756 23553064 -165726490 - AluSq SINE Alu -4 309 1 342 274 62 20 chr6 23553371 23553517 -165726037 + MIR SINE MIR 29 180 -82 2467 72 3 0 chr6 23554782 23555088 -165724466 - AluSp SINE Alu -6 307 1 2282 89 3 32 chr6 23555249 23555564 -165723990 - AluSg SINE Alu -4 306 1 2027 265 150 26 chr6 23555698 23556596 -165722958 - L2 LINE L2 0 3313 2216 2103 104 3 7 chr6 23556596 23556894 -165722660 - AluSx SINE Alu -15 297 1 2027 265 150 26 chr6 23556894 23557301 -165722253 - L2 LINE L2 -1097 2216 1861 2453 62 0 23 chr6 23557362 23557666 -165721888 + AluY SINE Alu 1 297 -14 230 344 15 15 chr6 23557711 23557842 -165721712 - MIR SINE MIR -50 212 82 2449 101 0 0 chr6 23558243 23558551 -165721003 - AluSg SINE Alu -2 308 1 2415 76 9 22 chr6 23558556 23558871 -165720683 - AluY SINE Alu 0 311 1 1192 139 10 57 chr6 23558891 23559100 -165720454 - AluSx SINE Alu -113 199 1 2039 97 27 40 chr6 23559214 23559512 -165720042 - AluSx SINE Alu -18 294 1 264 271 0 0 chr6 23559605 23559675 -165719879 - MLT1L LTR MaLR 0 615 546 221 189 0 0 chr6 23559675 23559712 -165719842 + T-rich Low_complexity Low_complexity 1 37 0 891 61 0 55 chr6 23559712 23559875 -165719679 + (TTCC)n Simple_repeat Simple_repeat 3 156 0 255 271 17 0 chr6 23559895 23559954 -165719600 - MLT1L LTR MaLR -91 524 465 2223 104 0 13 chr6 23560002 23560300 -165719254 - AluSg1 SINE Alu -15 294 1 2005 222 22 89 chr6 23560334 23560421 -165719133 - L1MB7 LINE L1 -46 6138 6047 2551 74 0 0 chr6 23560421 23560730 -165718824 - AluY SINE Alu -2 309 1 2005 222 22 89 chr6 23560730 23561117 -165718437 - L1MB7 LINE L1 -137 6047 5636 2004 149 0 3 chr6 23561117 23561413 -165718141 + AluJb SINE Alu 1 295 -17 2005 222 22 89 chr6 23561413 23561505 -165718049 - L1MB7 LINE L1 -548 5636 5622 2351 105 0 6 chr6 23561505 23561820 -165717734 - AluSq SINE Alu 0 313 1 2005 222 22 89 chr6 23561820 23561935 -165717619 - L1MB7 LINE L1 -562 5622 5501 180 0 0 0 chr6 23562259 23562279 -165717275 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2261 89 0 0 chr6 23562279 23562559 -165716995 - AluSx SINE Alu -32 280 1 869 136 0 29 chr6 23562662 23562802 -165716752 + AluJb SINE Alu 1 136 -176 1668 171 19 23 chr6 23563532 23563842 -165715712 - AluJb SINE Alu -3 309 1 2277 113 3 0 chr6 23563937 23564238 -165715316 - AluSq SINE Alu -11 302 1 278 359 47 0 chr6 23564363 23564491 -165715063 - MIR SINE MIR -61 201 68 2591 71 0 0 chr6 23564703 23565014 -165714540 - AluY SINE Alu 0 311 1 1870 162 0 40 chr6 23565497 23565818 -165713736 - AluJo SINE Alu -4 308 1 2338 76 0 3 chr6 23565838 23566126 -165713428 - AluY SINE Alu -23 288 2 2171 117 0 0 chr6 23566285 23566568 -165712986 + AluSq SINE Alu 1 283 -30 37 39 0 0 chr6 23566572 23566623 -165712931 + AT_rich Low_complexity Low_complexity 1 51 0 2481 78 0 3 chr6 23566920 23567229 -165712325 + AluSg SINE Alu 1 308 -2 3362 113 14 67 chr6 23568551 23569107 -165710447 + MER1A DNA MER1_type 1 527 0 353 74 0 0 chr6 23569184 23569238 -165710316 - Alu SINE Alu 0 302 249 261 83 0 0 chr6 23569240 23569276 -165710278 + (A)n Simple_repeat Simple_repeat 1 36 0 1252 132 0 0 chr6 23569276 23569458 -165710096 + AluSg/x SINE Alu 129 310 -2 241 216 128 49 chr6 23569480 23569582 -165709972 - MER103 DNA DNA -14 152 43 2255 101 0 7 chr6 23569966 23570263 -165709291 + AluSc SINE Alu 1 295 -14 1089 203 198 44 chr6 23570610 23571044 -165708510 + MLT1D LTR MaLR 5 505 0 2751 36 0 0 chr6 23571398 23571705 -165707849 + AluY SINE Alu 1 307 -4 778 88 18 0 chr6 23572383 23572497 -165707057 - LTR9B LTR ERV1 -87 557 442 250 113 0 75 chr6 23573009 23573062 -165706492 + L2 LINE L2 3265 3313 0 996 151 158 58 chr6 23573198 23573489 -165706065 - MER33 DNA MER1_type 0 324 5 296 159 0 29 chr6 23573727 23573796 -165705758 + MIR SINE MIR 82 148 -114 2384 104 0 0 chr6 23573834 23574142 -165705412 - AluSx SINE Alu -4 308 1 2330 97 0 0 chr6 23576271 23576560 -165702994 - AluSc SINE Alu -20 289 1 835 123 0 0 chr6 23577574 23577696 -165701858 - MER41A LTR ERV1 0 554 433 1092 62 8 0 chr6 23577696 23577825 -165701729 + AluSq/x SINE Alu 3 132 -180 2386 95 0 3 chr6 23577827 23578133 -165701421 + AluSq SINE Alu 1 305 -8 2258 117 3 0 chr6 23578146 23578445 -165701109 + AluSx SINE Alu 1 300 -12 1181 106 6 0 chr6 23578447 23578608 -165700946 - MER41B LTR ERV1 -111 524 363 1621 125 20 128 chr6 23578608 23578953 -165700601 - AluYb8 SINE Alu 0 308 1 2141 131 0 10 chr6 23578953 23579258 -165700296 - AluSq SINE Alu -11 302 1 1978 128 82 33 chr6 23580353 23580427 -165699127 - MLT1B LTR MaLR -2 388 319 2196 94 3 7 chr6 23580427 23580715 -165698839 + AluSq SINE Alu 1 287 -26 1978 128 82 33 chr6 23580715 23581008 -165698546 - MLT1B LTR MaLR -71 319 3 2152 124 0 0 chr6 23581422 23581713 -165697841 - AluSx SINE Alu -21 291 1 1148 240 146 28 chr6 23581719 23582144 -165697410 - L1ME3A LINE L1 -5 6165 5691 1028 228 64 38 chr6 23582159 23582380 -165697174 - L1MA7 LINE L1 -4 6287 6073 2394 69 0 20 chr6 23582380 23582686 -165696868 - AluY SINE Alu -11 300 1 1028 228 64 38 chr6 23582686 23582890 -165696664 - L1MA7 LINE L1 -218 6073 5346 860 171 13 7 chr6 23582914 23583066 -165696488 + AluJb SINE Alu 140 292 -20 749 62 31 0 chr6 23583066 23583195 -165696359 + (TA)n Simple_repeat Simple_repeat 1 133 0 325 172 78 0 chr6 23583349 23583413 -165696141 - MER94 DNA DNA -65 69 1 267 347 97 0 chr6 23583468 23583592 -165695962 - L2 LINE L2 0 3272 3137 2305 101 3 0 chr6 23583603 23583899 -165695655 - AluSp SINE Alu -16 297 1 2336 56 62 0 chr6 23583899 23584187 -165695367 - AluY SINE Alu -5 306 1 213 250 14 83 chr6 23584746 23584818 -165694736 + L2 LINE L2 3204 3270 -2 2235 87 0 45 chr6 23584836 23584980 -165694574 + AluSx SINE Alu 3 127 -185 2382 59 31 0 chr6 23584980 23585267 -165694287 + AluY SINE Alu 2 297 -14 2235 87 0 45 chr6 23585267 23585432 -165694122 + AluSx SINE Alu 127 298 -14 365 291 12 42 chr6 23585678 23585843 -165693711 - L2 LINE L2 -205 3067 2908 2623 193 54 51 chr6 23586026 23586891 -165692663 + L1MC5 LINE L1 6990 7913 -48 26 50 0 0 chr6 23587026 23587066 -165692488 + AT_rich Low_complexity Low_complexity 1 40 0 330 224 43 26 chr6 23587109 23587225 -165692329 - L1ME4a LINE L1 -21 6100 5983 22 56 0 0 chr6 23587238 23587274 -165692280 + AT_rich Low_complexity Low_complexity 1 36 0 616 295 91 42 chr6 23587286 23587573 -165691981 - L1ME4a LINE L1 -233 5888 5616 2586 46 0 13 chr6 23587573 23587880 -165691674 - AluY SINE Alu -8 303 1 616 295 91 42 chr6 23587880 23588185 -165691369 - L1ME4a LINE L1 -505 5616 5267 2150 112 0 0 chr6 23588278 23588556 -165690998 + AluSx SINE Alu 2 279 -33 207 0 0 0 chr6 23588556 23588579 -165690975 + (CA)n Simple_repeat Simple_repeat 1 23 0 21 57 0 0 chr6 23588580 23588615 -165690939 + AT_rich Low_complexity Low_complexity 1 35 0 309 238 19 76 chr6 23589549 23589654 -165689900 + MIR SINE MIR 44 142 -66 2133 118 10 0 chr6 23589670 23589975 -165689579 - AluSq SINE Alu -5 308 1 1757 175 45 0 chr6 23590072 23590358 -165689196 + AluJo SINE Alu 1 299 -13 2445 77 0 13 chr6 23591666 23591979 -165687575 + AluY SINE Alu 1 309 -2 1937 128 48 0 chr6 23592132 23592421 -165687133 - AluSx SINE Alu -9 303 1 2441 77 0 3 chr6 23592556 23592856 -165686698 + AluSg SINE Alu 1 299 -11 365 233 23 0 chr6 23594282 23594368 -165685186 + L2 LINE L2 3223 3310 -3 21 0 0 0 chr6 23594572 23594593 -165684961 + AT_rich Low_complexity Low_complexity 1 21 0 2067 111 4 4 chr6 23594660 23594973 -165684581 - AluSg SINE Alu 0 313 1 232 135 0 0 chr6 23594973 23595010 -165684544 + Alu SINE Alu 201 237 -66 213 339 34 34 chr6 23595260 23595378 -165684176 - L2 LINE L2 0 3272 3155 371 280 103 40 chr6 23595421 23595596 -165683958 - MIR SINE MIR -6 256 71 3915 159 66 22 chr6 23596223 23596725 -165682829 - L1MB1 LINE L1 -1 6167 5620 1258 224 53 30 chr6 23596725 23597029 -165682525 + AluJo SINE Alu 1 311 -1 3915 159 66 22 chr6 23597029 23597268 -165682286 - L1MB1 LINE L1 -548 5620 5393 1053 202 0 5 chr6 23597262 23597480 -165682074 + L1MB1 LINE L1 5150 5366 -780 * 2286 95 3 7 chr6 23597480 23597784 -165681770 + AluSg SINE Alu 1 303 -7 202 273 106 0 chr6 23598524 23598590 -165680964 - MIR3 SINE MIR -43 165 93 2307 109 3 0 chr6 23598749 23599060 -165680494 - AluSp SINE Alu -1 312 1 2272 99 3 0 chr6 23599745 23600038 -165679516 + AluSp SINE Alu 1 294 -19 1966 105 30 20 chr6 23600050 23600178 -165679376 + AluSq SINE Alu 1 126 -187 2414 78 0 7 chr6 23600178 23600485 -165679069 + AluSg1 SINE Alu 1 305 -4 1966 105 30 20 chr6 23600485 23600651 -165678903 + AluSq SINE Alu 126 298 -15 3941 159 56 27 chr6 23600717 23601228 -165678326 - MER4E LTR ERV1 -4 775 280 180 0 0 0 chr6 23601228 23601248 -165678306 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 567 53 0 0 chr6 23601247 23601322 -165678232 + (CA)n Simple_repeat Simple_repeat 1 75 0 3941 159 56 27 chr6 23601248 23601558 -165677996 - MER4E LTR ERV1 -499 280 6 846 239 0 0 chr6 23601698 23601857 -165677697 - FRAM SINE Alu -18 158 1 1741 218 44 36 chr6 23601963 23602458 -165677096 - MLT1D LTR MaLR 0 505 7 2418 79 10 0 chr6 23602760 23603065 -165676489 + AluSx SINE Alu 1 308 -4 551 253 41 57 chr6 23603163 23603357 -165676197 + MIR SINE MIR 72 262 0 1917 91 0 0 chr6 23603660 23603903 -165675651 - AluSx SINE Alu -69 243 1 2253 84 0 11 chr6 23604415 23604732 -165674822 - AluSq SINE Alu 0 314 1 1483 116 116 4 chr6 23604737 23604970 -165674584 - AluSx SINE Alu -18 294 36 1364 176 11 22 chr6 23605277 23605544 -165674010 - MER61B LTR ERV1 -29 396 133 2358 85 0 13 chr6 23605819 23606126 -165673428 - AluSq SINE Alu -9 304 2 246 240 160 0 chr6 23606710 23606785 -165672769 + MIR3 SINE MIR 115 201 -7 204 40 0 0 chr6 23607425 23607450 -165672104 + (T)n Simple_repeat Simple_repeat 1 25 0 2405 92 0 0 chr6 23607619 23607922 -165671632 - AluSq SINE Alu -10 303 1 2371 92 0 7 chr6 23608630 23608935 -165670619 + AluSc SINE Alu 1 303 -6 300 137 0 0 chr6 23608936 23608987 -165670567 + (CA)n Simple_repeat Simple_repeat 2 52 0 1112 155 0 34 chr6 23609086 23609293 -165670261 - AluJo SINE Alu -24 288 89 1884 92 99 34 chr6 23610418 23610711 -165668843 - AluSx SINE Alu 0 312 1 2191 84 0 11 chr6 23611194 23611479 -165668075 + AluSx SINE Alu 1 282 -30 554 118 13 0 chr6 23611479 23611555 -165667999 - AluS SINE Alu -231 78 2 258 120 0 0 chr6 23611568 23611611 -165667943 + (A)n Simple_repeat Simple_repeat 1 46 -4 2472 60 0 16 chr6 23611611 23611927 -165667627 + AluY SINE Alu 1 311 0 258 120 0 0 chr6 23611927 23611933 -165667621 + (A)n Simple_repeat Simple_repeat 45 50 0 847 180 20 20 chr6 23611992 23612142 -165667412 + FRAM SINE Alu 6 155 -21 2362 88 0 7 chr6 23613067 23613372 -165666182 - AluSp SINE Alu -10 303 1 2065 135 27 0 chr6 23613767 23614064 -165665490 - AluSx SINE Alu -3 309 5 258 259 0 37 chr6 23614196 23614277 -165665277 - MIR SINE MIR -73 135 58 1029 115 0 19 chr6 23614891 23615047 -165664507 - L1MB3 LINE L1 -1 6182 6030 2275 89 7 0 chr6 23615098 23615389 -165664165 + AluSg SINE Alu 1 293 -17 250 261 91 0 chr6 23615500 23615588 -165663966 - MIR SINE MIR -51 211 116 189 178 0 0 chr6 23615705 23615750 -165663804 + (CTAG)n Simple_repeat Simple_repeat 1 45 0 26 30 0 0 chr6 23616142 23616175 -165663379 + AT_rich Low_complexity Low_complexity 1 33 0 626 222 43 48 chr6 23616757 23616964 -165662590 - MIR SINE MIR 0 262 57 2357 67 3 0 chr6 23617615 23617928 -165661626 - AluSp SINE Alu 0 314 1 2284 93 10 0 chr6 23618105 23618395 -165661159 + AluSx SINE Alu 1 293 -19 2285 80 10 0 chr6 23619519 23619808 -165659746 - AluSg1 SINE Alu -17 292 1 185 319 57 71 chr6 23620141 23620282 -165659272 + L2 LINE L2 3172 3310 -3 1225 143 46 97 chr6 23620832 23621091 -165658463 + AluJb SINE Alu 67 312 0 24 53 0 0 chr6 23621895 23621933 -165657621 + AT_rich Low_complexity Low_complexity 1 38 0 200 200 0 0 chr6 23621989 23622024 -165657530 - L2 LINE L2 -12 3301 3267 548 277 55 118 chr6 23622148 23622477 -165657077 - L2 LINE L2 -1 3271 2964 550 305 26 13 chr6 23622715 23622941 -165656613 - L2 LINE L2 -599 2715 2487 21 0 0 0 chr6 23623024 23623045 -165656509 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 23623622 23623650 -165655904 + AT_rich Low_complexity Low_complexity 1 28 0 192 273 0 0 chr6 23625784 23625839 -165653715 + L3b LINE CR1 1383 1437 -146 2190 94 0 52 chr6 23626024 23626352 -165653202 - AluSq SINE Alu -2 311 1 2147 117 0 0 chr6 23626363 23626663 -165652891 - AluY SINE Alu -11 300 1 2051 89 32 3 chr6 23626799 23627081 -165652473 - AluSg SINE Alu -19 291 2 198 328 0 33 chr6 23627183 23627244 -165652310 - L2 LINE L2 -30 3242 3184 1882 142 3 32 chr6 23627438 23627749 -165651805 - AluJo SINE Alu -8 304 3 1186 145 0 0 chr6 23628086 23628258 -165651296 + AluJb SINE Alu 130 301 -11 255 263 13 125 chr6 23628554 23628706 -165650848 + L2 LINE L2 2916 3050 -222 907 240 59 125 chr6 23628741 23628977 -165650577 - LTR67 LTR ERVL 0 557 307 2211 121 0 13 chr6 23628977 23629154 -165650400 - AluSx SINE Alu -2 310 137 2626 45 3 3 chr6 23629154 23629464 -165650090 - AluY SINE Alu -1 310 1 2211 121 0 13 chr6 23629464 23629600 -165649954 - AluSx SINE Alu -175 137 1 907 240 59 125 chr6 23629600 23629955 -165649599 - LTR67 LTR ERVL -250 307 5 261 182 55 0 chr6 23630000 23630055 -165649499 + MIR SINE MIR 156 213 -49 27 0 0 0 chr6 23631964 23631991 -165647563 + AT_rich Low_complexity Low_complexity 1 27 0 306 237 148 15 chr6 23633772 23633907 -165645647 - L1ME4a LINE L1 -1 6189 6037 711 258 140 56 chr6 23634242 23634434 -165645120 - L1ME4a LINE L1 -223 6016 5842 930 265 185 35 chr6 23634434 23634861 -165644693 + LTR16C LTR ERVL 1 491 0 711 258 140 56 chr6 23634861 23635240 -165644314 - L1ME4a LINE L1 -397 5842 5352 804 177 23 0 chr6 23635240 23635370 -165644184 - FLAM_A SINE Alu 0 133 1 711 258 140 56 chr6 23635370 23635500 -165644054 - L1ME4a LINE L1 -887 5352 5234 2393 85 0 0 chr6 23635520 23635814 -165643740 - AluSx SINE Alu -17 295 2 405 202 0 11 chr6 23635871 23635965 -165643589 - L1ME4a LINE L1 -4107 2289 2197 282 178 0 0 chr6 23635967 23636021 -165643533 - Alu SINE Alu -269 39 1 302 45 0 136 chr6 23637281 23637298 -165642256 + L1MB3 LINE L1 6127 6145 -38 1972 123 16 52 chr6 23637298 23637608 -165641946 - AluSg SINE Alu -11 299 1 302 45 0 136 chr6 23637608 23637656 -165641898 + L1MB3 LINE L1 6145 6183 0 363 366 65 5 chr6 23637940 23638156 -165641398 - MIR SINE MIR -14 248 20 287 321 0 27 chr6 23638293 23638405 -165641149 - L2 LINE L2 -1 3312 3204 2441 87 0 0 chr6 23638609 23638919 -165640635 + AluSg SINE Alu 1 310 0 861 202 40 15 chr6 23638924 23639122 -165640432 + MER82 DNA MER2_type 5 207 -446 21 82 0 0 chr6 23639124 23639173 -165640381 + AT_rich Low_complexity Low_complexity 1 49 0 2197 215 35 20 chr6 23639178 23639633 -165639921 + MER82 DNA MER2_type 191 652 -1 485 302 26 16 chr6 23639733 23639922 -165639632 - L2 LINE L2 -248 3065 2875 2026 81 23 8 chr6 23640400 23640660 -165638894 - AluSx SINE Alu -48 264 1 2406 63 0 47 chr6 23640673 23640991 -165638563 - AluY SINE Alu -7 304 2 2445 62 10 19 chr6 23640998 23641306 -165638248 - AluY SINE Alu -6 305 1 2192 85 61 0 chr6 23641964 23642257 -165637297 - AluSp SINE Alu -2 311 1 1832 157 3 14 chr6 23642451 23642745 -165636809 - AluJo SINE Alu -19 293 3 37 23 0 0 chr6 23643681 23643725 -165635829 + AT_rich Low_complexity Low_complexity 1 44 0 4583 137 50 61 chr6 23643773 23645243 -165634311 + pTR5 LTR ERV1 741 2438 0 2061 77 0 0 chr6 23645300 23645560 -165633994 + AluY SINE Alu 1 260 -51 333 0 0 0 chr6 23645605 23645642 -165633912 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 1929 146 17 3 chr6 23646041 23646205 -165633349 - AluSx SINE Alu -7 305 134 2024 124 10 13 chr6 23646205 23646503 -165633051 - AluSx SINE Alu -15 297 1 1929 146 17 3 chr6 23646503 23646639 -165632915 - AluSx SINE Alu -178 134 1 23 54 0 0 chr6 23646644 23646681 -165632873 + AT_rich Low_complexity Low_complexity 1 37 0 2142 116 3 0 chr6 23646893 23647187 -165632367 - AluSx SINE Alu -11 301 7 1066 177 0 58 chr6 23647451 23647677 -165631877 + AluJb SINE Alu 85 297 -15 25 0 0 0 chr6 23648673 23648698 -165630856 + AT_rich Low_complexity Low_complexity 1 25 0 1106 196 0 24 chr6 23648699 23648908 -165630646 - AluJo SINE Alu -23 289 86 2281 107 0 3 chr6 23649072 23649382 -165630172 - AluSc SINE Alu 0 309 1 2263 109 0 3 chr6 23649876 23650178 -165629376 + AluSx SINE Alu 1 301 -11 193 222 0 0 chr6 23651379 23651424 -165628130 - L2 LINE L2 -5 3308 3264 2502 57 0 10 chr6 23653303 23653602 -165625952 + AluY SINE Alu 1 296 -15 306 0 0 0 chr6 23653603 23653637 -165625917 + (TA)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr6 23653636 23653665 -165625889 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 476 356 50 19 chr6 23654042 23654362 -165625192 + L3 LINE CR1 1147 1476 -101 23 33 0 0 chr6 23655073 23655103 -165624451 + AT_rich Low_complexity Low_complexity 1 30 0 215 225 81 72 chr6 23656218 23656329 -165623225 + L2 LINE L2 3160 3271 -1 1896 127 11 14 chr6 23656647 23656831 -165622723 - AluSc SINE Alu 0 318 134 2452 58 0 26 chr6 23656831 23657139 -165622415 - AluY SINE Alu -11 300 1 1896 127 11 14 chr6 23657139 23657273 -165622281 - AluSc SINE Alu -184 134 1 285 275 14 0 chr6 23657298 23657367 -165622187 + CT-rich Low_complexity Low_complexity 3 72 0 602 244 0 0 chr6 23657448 23657567 -165621987 + FLAM_A SINE Alu 8 126 -16 777 132 0 90 chr6 23658079 23658109 -165621445 - FLAM_C SINE Alu -169 133 102 1599 133 182 0 chr6 23658109 23658373 -165621181 + AluSx SINE Alu 1 312 0 777 132 0 90 chr6 23658373 23658486 -165621068 - FLAM_C SINE Alu -200 102 3 35 0 0 0 chr6 23659056 23659091 -165620463 + AT_rich Low_complexity Low_complexity 1 35 0 2110 84 40 0 chr6 23659096 23659370 -165620184 - AluSg SINE Alu -25 285 1 1184 68 0 20 chr6 23659370 23659516 -165620038 - AluSq/x SINE Alu -170 143 1 524 315 72 21 chr6 23659639 23659918 -165619636 - L2 LINE L2 -2 3311 3019 2228 128 0 0 chr6 23660207 23660520 -165619034 - AluSq SINE Alu 0 313 1 1041 131 0 0 chr6 23661354 23661530 -165618024 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 245 336 60 8 chr6 23661536 23661670 -165617884 + MIR3 SINE MIR 61 201 -7 505 203 38 23 chr6 23661974 23662107 -165617447 - MIR SINE MIR -71 191 57 2504 57 7 0 chr6 23662163 23662464 -165617090 + AluSp SINE Alu 1 303 -10 198 118 0 0 chr6 23662497 23662531 -165617023 + (TCCCC)n Simple_repeat Simple_repeat 4 37 0 1926 152 0 3 chr6 23662531 23662821 -165616733 - AluJb SINE Alu -23 289 1 219 293 28 28 chr6 23662822 23662928 -165616626 - L2 LINE L2 -303 2969 2864 669 119 0 0 chr6 23664736 23664837 -165614717 + AluJb SINE Alu 210 310 -2 2373 79 0 3 chr6 23665006 23665298 -165614256 - AluSg SINE Alu -19 291 1 286 344 68 21 chr6 23665450 23665642 -165613912 + MIR SINE MIR 6 206 -56 2288 78 3 3 chr6 23665654 23665971 -165613583 + AluSp SINE Alu 1 317 0 2102 115 0 44 chr6 23666865 23667186 -165612368 - AluSx SINE Alu -5 307 1 1682 150 18 81 chr6 23667251 23667389 -165612165 + AluJo SINE Alu 1 146 -166 261 0 0 0 chr6 23667389 23667418 -165612136 + (TA)n Simple_repeat Simple_repeat 2 30 0 1682 150 18 81 chr6 23667418 23667612 -165611942 + AluJo SINE Alu 146 312 0 770 214 92 6 chr6 23667815 23667988 -165611566 + MER5A DNA MER1_type 2 189 0 550 221 16 89 chr6 23668334 23668524 -165611030 - MER5B DNA MER1_type -2 176 1 2318 100 0 0 chr6 23669274 23669573 -165609981 + AluSg1 SINE Alu 1 299 -10 2206 73 35 7 chr6 23670209 23670495 -165609059 - AluSg SINE Alu -16 294 1 2125 119 3 13 chr6 23671192 23671494 -165608060 - AluSg SINE Alu -10 300 2 2296 94 0 7 chr6 23671919 23672218 -165607336 + AluSq SINE Alu 1 297 -16 216 200 0 0 chr6 23672362 23672407 -165607147 + T-rich Low_complexity Low_complexity 1 45 0 213 39 0 0 chr6 23672606 23672632 -165606922 + (TG)n Simple_repeat Simple_repeat 2 27 0 652 177 14 14 chr6 23672755 23672896 -165606658 - L1MB3 LINE L1 -2 6181 6041 1801 35 39 9 chr6 23672896 23673127 -165606427 + L1PA7 LINE L1 5915 6152 -2 2663 113 13 0 chr6 23673132 23673513 -165606041 - L1MB3 LINE L1 -130 6053 5668 2142 128 0 3 chr6 23673546 23673836 -165605718 - AluSq SINE Alu -24 289 1 2252 118 3 0 chr6 23674112 23674417 -165605137 + AluSq SINE Alu 1 306 -7 518 264 91 32 chr6 23674760 23674980 -165604574 - MIR SINE MIR -5 257 25 1720 151 49 30 chr6 23674984 23675288 -165604266 - AluJo SINE Alu -2 310 1 525 71 0 0 chr6 23675374 23675444 -165604110 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 2233 124 0 10 chr6 23675444 23675758 -165603796 - AluSx SINE Alu -1 311 1 21 36 0 0 chr6 23676157 23676185 -165603369 + AT_rich Low_complexity Low_complexity 1 28 0 1793 164 0 37 chr6 23676457 23676780 -165602774 - AluJo SINE Alu -1 311 1 524 240 65 37 chr6 23676970 23677187 -165602367 - L1MC4a LINE L1 -1764 6044 5822 363 154 0 0 chr6 23677198 23677263 -165602291 + (TA)n Simple_repeat Simple_repeat 2 66 0 280 207 98 0 chr6 23677265 23677347 -165602207 - L1MC4 LINE L1 -1339 6703 6614 1330 99 28 0 chr6 23677350 23677531 -165602023 - AluSg/x SINE Alu -7 305 120 442 201 33 113 chr6 23677531 23677548 -165602006 - L1MD2 LINE L1 -20 7960 7943 2048 130 0 17 chr6 23677548 23677849 -165601705 + AluSq SINE Alu 1 296 -17 442 201 33 113 chr6 23677849 23677959 -165601595 - L1MD2 LINE L1 -37 7943 7826 2307 104 3 3 chr6 23677959 23678268 -165601286 + AluSx SINE Alu 1 309 -3 442 201 33 113 chr6 23678268 23678370 -165601184 - L1MD2 LINE L1 -154 7826 6208 2354 147 14 14 chr6 23678407 23678835 -165600719 - L1MB4 LINE L1 -277 5903 5476 6533 66 18 47 chr6 23678934 23679916 -165599638 - SVA Other Other 0 1386 433 1592 82 7 36 chr6 23679933 23680212 -165599342 - SVA Other Other -520 866 596 5869 63 25 61 chr6 23680240 23681215 -165598339 - SVA Other Other -518 868 5 364 269 19 28 chr6 23681215 23681323 -165598231 - L1MD2 LINE L1 -217 6142 6036 1717 153 27 34 chr6 23681323 23681618 -165597936 - AluJo SINE Alu -16 296 4 2200 99 0 63 chr6 23682151 23682484 -165597070 + AluSx SINE Alu 1 312 0 213 280 65 11 chr6 23682534 23682627 -165596927 - MIR SINE MIR -79 183 86 1707 168 31 11 chr6 23682717 23683003 -165596551 + AluJb SINE Alu 1 292 -20 407 335 58 5 chr6 23683144 23683368 -165596186 + MIR SINE MIR 13 248 -14 191 205 0 0 chr6 23684414 23684453 -165595101 + MER5B DNA MER1_type 2 40 -138 191 304 0 0 chr6 23684478 23684524 -165595030 - MER5B DNA MER1_type -132 46 1 2418 70 3 10 chr6 23686039 23686339 -165593215 - AluY SINE Alu -11 300 3 324 0 0 0 chr6 23686380 23686416 -165593138 + (TG)n Simple_repeat Simple_repeat 1 36 0 893 215 0 0 chr6 23686416 23686574 -165592980 - FAM SINE Alu -17 158 1 2238 95 20 17 chr6 23686599 23686895 -165592659 - AluSx SINE Alu -15 297 1 185 0 40 0 chr6 23687236 23687261 -165592293 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2065 129 0 10 chr6 23687263 23687557 -165591997 - AluSq SINE Alu -22 291 1 500 176 0 0 chr6 23688315 23688400 -165591154 + AluY SINE Alu 209 293 -18 2370 97 3 0 chr6 23688411 23688721 -165590833 + AluSx SINE Alu 1 311 -1 1853 185 0 10 chr6 23688731 23689045 -165590509 + AluJb SINE Alu 1 311 -1 1099 91 0 0 chr6 23689080 23689212 -165590342 + AluSq/x SINE Alu 1 132 -181 201 39 0 0 chr6 23689366 23689392 -165590162 + (TA)n Simple_repeat Simple_repeat 1 26 0 2330 73 3 3 chr6 23689393 23689682 -165589872 - AluSp SINE Alu -24 289 1 2153 114 0 27 chr6 23689695 23689993 -165589561 - AluSq SINE Alu -23 290 1 26 0 0 0 chr6 23690064 23690090 -165589464 + AT_rich Low_complexity Low_complexity 1 26 0 1996 108 11 28 chr6 23690560 23690846 -165588708 + AluSq SINE Alu 13 293 -20 194 159 45 0 chr6 23692919 23692963 -165586591 + CT-rich Low_complexity Low_complexity 3 48 0 22 0 0 0 chr6 23693431 23693453 -165586101 + AT_rich Low_complexity Low_complexity 1 22 0 226 248 69 97 chr6 23693528 23693585 -165585969 + L1ME4a LINE L1 5975 6032 -89 2242 108 0 7 chr6 23693585 23693882 -165585672 - AluSx SINE Alu -12 300 6 226 248 69 97 chr6 23693882 23693969 -165585585 + L1ME4a LINE L1 6032 6115 -6 1606 165 10 34 chr6 23694255 23694387 -165585167 + AluJb SINE Alu 2 136 -199 2247 110 3 13 chr6 23694387 23694697 -165584857 + AluSp SINE Alu 1 307 -6 1606 165 10 34 chr6 23694697 23694905 -165584649 + AluJb SINE Alu 136 335 0 705 164 16 0 chr6 23695571 23695693 -165583861 - AluJb SINE Alu -8 304 181 2334 91 7 0 chr6 23695693 23695989 -165583565 - AluSg SINE Alu -12 298 1 216 0 0 0 chr6 23695989 23696013 -165583541 + (T)n Simple_repeat Simple_repeat 1 24 0 279 0 0 0 chr6 23696657 23696688 -165582866 + (TG)n Simple_repeat Simple_repeat 2 32 0 266 200 33 0 chr6 23696868 23696928 -165582626 + MIR SINE MIR 86 147 -115 238 235 86 12 chr6 23697080 23697161 -165582393 + MIR3 SINE MIR 91 177 -31 1718 81 154 11 chr6 23697201 23697461 -165582093 - AluSg SINE Alu -3 297 1 570 41 0 0 chr6 23697712 23697785 -165581769 + AluY SINE Alu 223 295 -15 360 0 0 0 chr6 23698088 23698128 -165581426 + (TG)n Simple_repeat Simple_repeat 1 40 0 1883 116 45 0 chr6 23698128 23698396 -165581158 - AluSq SINE Alu -33 280 1 2211 127 0 0 chr6 23698686 23698986 -165580568 - AluSx SINE Alu -12 300 1 211 214 24 0 chr6 23699972 23700014 -165579540 + GA-rich Low_complexity Low_complexity 2 44 0 2345 92 3 3 chr6 23700138 23700444 -165579110 - AluSq SINE Alu -7 306 1 2213 117 3 0 chr6 23700446 23700745 -165578809 - AluSg SINE Alu -10 300 1 192 77 0 0 chr6 23701591 23701617 -165577937 + (TTTAA)n Simple_repeat Simple_repeat 5 30 0 599 205 70 119 chr6 23701827 23701898 -165577656 - L1ME2 LINE L1 -1 6163 6090 2305 94 7 3 chr6 23701898 23702205 -165577349 - AluSq SINE Alu -5 308 1 599 205 70 119 chr6 23702205 23702345 -165577209 - L1ME2 LINE L1 -74 6090 5969 201 39 0 0 chr6 23702345 23702371 -165577183 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 599 205 70 119 chr6 23702371 23702460 -165577094 - L1ME2 LINE L1 -195 5969 5877 1564 216 129 16 chr6 23702628 23702808 -165576746 - L1MD2 LINE L1 -8 6351 6193 204 40 0 0 chr6 23702808 23702833 -165576721 + (TG)n Simple_repeat Simple_repeat 2 26 0 1564 216 129 16 chr6 23702833 23703068 -165576486 - L1MD2 LINE L1 -166 6193 5885 1920 151 0 22 chr6 23703068 23703380 -165576174 - AluSx SINE Alu -7 305 1 934 149 65 0 chr6 23703380 23703548 -165576006 - L1MD2 LINE L1 -877 5482 5304 2634 67 0 13 chr6 23703565 23703880 -165575674 + AluSp SINE Alu 1 311 -2 2150 143 0 0 chr6 23704177 23704485 -165575069 - AluSq SINE Alu -5 308 1 378 243 90 30 chr6 23704844 23705032 -165574522 + MIR SINE MIR 17 212 -50 2138 122 0 35 chr6 23705214 23705533 -165574021 - AluSg SINE Alu -1 309 2 192 222 62 49 chr6 23705823 23705904 -165573650 + MIR SINE MIR 34 115 -93 2077 128 0 10 chr6 23706454 23706760 -165572794 + AluY SINE Alu 1 303 -8 459 243 108 60 chr6 23707898 23708166 -165571388 + L2 LINE L2 3033 3313 0 191 238 0 0 chr6 23708623 23708665 -165570889 + MIR SINE MIR 30 71 -137 2388 101 0 0 chr6 23708785 23709083 -165570471 - AluSx SINE Alu -14 298 1 432 0 0 0 chr6 23709168 23709216 -165570338 + (TG)n Simple_repeat Simple_repeat 2 49 0 671 242 6 22 chr6 23709717 23709899 -165569655 + MER5A DNA MER1_type 7 185 -4 1780 149 54 0 chr6 23709970 23710266 -165569288 - AluSx SINE Alu 0 312 1 180 289 0 0 chr6 23711655 23711707 -165567847 + MIR SINE MIR 156 207 -55 362 205 131 16 chr6 23713109 23713231 -165566323 + MIR SINE MIR 69 204 -58 2262 123 3 0 chr6 23713525 23713834 -165565720 + AluSq SINE Alu 1 310 -3 311 148 0 45 chr6 23713883 23713971 -165565583 + (TCTCC)n Simple_repeat Simple_repeat 3 86 0 1794 178 0 7 chr6 23713974 23714266 -165565288 - AluJb SINE Alu -18 294 5 21 36 0 0 chr6 23715853 23715881 -165563673 + AT_rich Low_complexity Low_complexity 1 28 0 2248 85 29 0 chr6 23716128 23716409 -165563145 + AluSx SINE Alu 1 289 -23 2151 256 79 24 chr6 23716489 23717199 -165562355 + MER20B DNA MER1_type 35 783 0 234 357 10 10 chr6 23717249 23717347 -165562207 + MER5A DNA MER1_type 4 101 -88 2424 90 3 3 chr6 23717409 23717721 -165561833 - AluSx SINE Alu 0 312 1 2140 138 0 13 chr6 23717848 23718160 -165561394 + AluSx SINE Alu 1 308 -4 228 325 145 35 chr6 23718226 23718632 -165560922 - L2 LINE L2 -691 2623 2173 2122 111 7 10 chr6 23718853 23719150 -165560404 - AluSx SINE Alu -16 296 1 1888 144 10 13 chr6 23720939 23721252 -165558302 - AluJb SINE Alu 0 312 1 238 215 25 0 chr6 23721415 23721494 -165558060 + (TA)n Simple_repeat Simple_repeat 2 82 0 282 326 142 0 chr6 23721573 23721714 -165557840 - MER91A DNA MER1_type -35 161 1 1782 149 14 35 chr6 23721831 23722149 -165557405 - AluJo SINE Alu 0 312 1 2329 112 3 0 chr6 23722509 23722821 -165556733 + AluSq SINE Alu 1 313 0 226 196 246 36 chr6 23723016 23723154 -165556400 - L1MA10 LINE L1 0 6334 6168 584 135 0 0 chr6 23723168 23723257 -165556297 - AluSg/x SINE Alu -4 305 217 1747 187 35 16 chr6 23723277 23723652 -165555902 - L1MB1 LINE L1 -15 6174 5793 2035 118 42 0 chr6 23724448 23724735 -165554819 + AluSx SINE Alu 1 299 -13 2278 135 0 0 chr6 23724962 23725274 -165554280 - AluSx SINE Alu 0 312 1 1345 132 0 85 chr6 23725466 23725577 -165553977 + MER46A DNA MER2_type 1 80 -2651 1844 124 40 11 chr6 23725577 23725879 -165553675 - AluSq SINE Alu 0 310 1 1345 132 0 85 chr6 23725879 23726024 -165553530 + MER46A DNA MER2_type 80 236 0 21 0 0 0 chr6 23728305 23728326 -165551228 + AT_rich Low_complexity Low_complexity 1 21 0 291 54 0 0 chr6 23728825 23728862 -165550692 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 189 0 0 0 chr6 23729365 23729386 -165550168 + (TG)n Simple_repeat Simple_repeat 1 21 0 219 259 0 0 chr6 23731756 23731810 -165547744 + MER5B DNA MER1_type 1 54 -124 2101 147 0 3 chr6 23731818 23732130 -165547424 + AluJb SINE Alu 1 311 -1 1366 175 4 22 chr6 23732133 23732362 -165547192 + AluJo SINE Alu 6 230 -82 221 157 0 59 chr6 23732894 23732945 -165546609 + GA-rich Low_complexity Low_complexity 4 51 0 1962 134 81 85 chr6 23733057 23733462 -165546092 + Tigger2a DNA MER2_type 3 407 -2301 2289 114 0 0 chr6 23733462 23733761 -165545793 - AluSq SINE Alu -14 299 1 1962 134 81 85 chr6 23733761 23733789 -165545765 + Tigger2a DNA MER2_type 407 434 0 207 0 0 0 chr6 23734473 23734496 -165545058 + (T)n Simple_repeat Simple_repeat 1 23 0 2945 97 22 48 chr6 23734496 23735670 -165543884 - SVA Other Other -799 1047 432 426 20 0 0 chr6 23736405 23736456 -165543098 + (TGG)n Simple_repeat Simple_repeat 3 53 0 2003 176 34 10 chr6 23737017 23737431 -165542123 + L1MB3 LINE L1 5718 6141 -42 871 117 95 0 chr6 23737432 23737569 -165541985 + AluSg/x SINE Alu 146 295 -15 306 0 0 0 chr6 23737592 23737626 -165541928 + (TA)n Simple_repeat Simple_repeat 1 34 0 2495 61 3 0 chr6 23737658 23737952 -165541602 - AluSg SINE Alu -14 296 2 1925 152 3 3 chr6 23738405 23738695 -165540859 + AluJo SINE Alu 7 296 -16 255 196 0 0 chr6 23738745 23738801 -165540753 - MER5A DNA MER1_type -83 106 51 457 254 90 16 chr6 23738835 23739024 -165540530 - HAL1 LINE L1 -2256 251 49 199 227 0 0 chr6 23739192 23739236 -165540318 - MIR SINE MIR -6 256 213 2060 181 98 65 chr6 23739649 23740253 -165539301 + MLT1E2 LTR MaLR 1 626 0 224 295 213 8 chr6 23740435 23740557 -165538997 + MIR3 SINE MIR 20 166 -42 610 115 21 21 chr6 23740803 23740899 -165538655 + AluSq/x SINE Alu 39 134 -178 2232 94 0 33 chr6 23740902 23741209 -165538345 + AluSq SINE Alu 6 302 -11 896 199 6 0 chr6 23741945 23742111 -165537443 + FRAM SINE Alu 4 170 -6 234 0 0 0 chr6 23743052 23743078 -165536476 + (TG)n Simple_repeat Simple_repeat 1 26 0 1779 132 16 0 chr6 23743078 23743329 -165536225 - AluSx SINE Alu -33 279 25 2243 112 0 0 chr6 23743759 23744053 -165535501 + AluSx SINE Alu 1 294 -18 961 222 15 15 chr6 23744438 23744641 -165534913 - MLT1A2 LTR MaLR 0 374 172 842 208 5 68 chr6 23744662 23744709 -165534845 - MLT1A2 LTR MaLR -171 194 146 2374 100 0 3 chr6 23744709 23745018 -165534536 - AluSp SINE Alu -5 308 1 842 208 5 68 chr6 23745018 23745177 -165534377 - MLT1A2 LTR MaLR -219 146 1 2263 102 0 3 chr6 23745305 23745627 -165533927 - AluSq SINE Alu 0 321 1 2282 102 0 23 chr6 23745830 23746135 -165533419 + AluSg SINE Alu 1 298 -12 395 331 19 6 chr6 23746225 23746385 -165533169 + MIR SINE MIR 35 196 -66 1793 157 7 4 chr6 23746410 23746714 -165532840 + AluJb SINE Alu 1 305 0 2076 116 3 46 chr6 23746828 23747155 -165532399 + AluSq SINE Alu 1 313 0 402 273 15 0 chr6 23747156 23747283 -165532271 + MIR SINE MIR 23 152 -62 2400 103 0 0 chr6 23748066 23748376 -165531178 - AluSg SINE Alu 0 310 1 2198 98 7 0 chr6 23748707 23749021 -165530533 + AluSx SINE Alu 1 316 0 2381 94 3 0 chr6 23749826 23750124 -165529430 + AluSp SINE Alu 1 299 -14 2088 105 61 0 chr6 23750222 23750517 -165529037 + AluSq SINE Alu 1 313 0 1862 150 7 3 chr6 23750527 23750834 -165528720 + AluSx SINE Alu 1 308 -4 1301 167 13 0 chr6 23750835 23751069 -165528485 + L1MD3 LINE L1 7746 7982 -13 749 124 0 0 chr6 23751093 23751198 -165528356 + FLAM_C SINE Alu 2 106 -37 2269 95 7 13 chr6 23752512 23752817 -165526737 - AluSx SINE Alu -9 303 1 340 221 87 55 chr6 23753779 23753906 -165525648 - MIR SINE MIR -60 148 18 1028 143 0 12 chr6 23754312 23754473 -165525081 - AluSg/x SINE Alu -13 299 141 2196 95 25 0 chr6 23755121 23755404 -165524150 - AluSx SINE Alu -22 290 1 312 336 23 0 chr6 23756830 23756958 -165522596 + MIR3 SINE MIR 78 208 0 22 0 0 0 chr6 23757173 23757195 -165522359 + AT_rich Low_complexity Low_complexity 1 22 0 14711 199 43 17 chr6 23757390 23761728 -165517826 + L1PB1 LINE L1 6 4234 -2633 2200 115 0 3 chr6 23761728 23762024 -165517530 + AluSg SINE Alu 1 295 -15 14711 199 43 17 chr6 23762024 23762356 -165517198 + L1PB1 LINE L1 4234 4556 -2311 2074 112 42 0 chr6 23762356 23762643 -165516911 + AluSc SINE Alu 1 299 -10 14711 199 43 17 chr6 23762643 23763065 -165516489 + L1PB1 LINE L1 4556 4966 -1901 2074 127 19 3 chr6 23763065 23763372 -165516182 + AluSx SINE Alu 1 312 0 14711 199 43 17 chr6 23763372 23764804 -165514750 + L1PB1 LINE L1 4966 6865 -2 2014 145 17 7 chr6 23764948 23765115 -165514439 - AluSx SINE Alu -12 300 127 2023 128 6 31 chr6 23765115 23765436 -165514118 - AluSp SINE Alu 0 313 1 2014 145 17 7 chr6 23765436 23765565 -165513989 - AluSx SINE Alu -185 127 1 2127 131 3 6 chr6 23766628 23766941 -165512613 - AluSx SINE Alu 0 312 1 356 278 247 11 chr6 23770590 23770853 -165508701 - L2 LINE L2 -819 2495 2171 2205 109 10 10 chr6 23771830 23772134 -165507420 - AluSp SINE Alu -9 304 1 1768 80 0 13 chr6 23772908 23773133 -165506421 - AluY SINE Alu -7 304 83 2128 113 35 0 chr6 23773460 23773743 -165505811 + AluSx SINE Alu 2 294 -18 2308 67 14 3 chr6 23773749 23774031 -165505523 + AluSp SINE Alu 20 304 -9 2036 116 0 11 chr6 23774381 23774702 -165504852 + AluSx SINE Alu 1 318 0 226 122 0 24 chr6 23774845 23774886 -165504668 - LTR16A1 LTR ERVL -361 96 57 388 280 96 75 chr6 23774931 23775336 -165504218 + L2 LINE L2 2781 3221 -92 1832 148 0 0 chr6 23775450 23775720 -165503834 - AluSx SINE Alu -10 302 33 1993 146 17 50 chr6 23775886 23776248 -165503306 + MER4D LTR ERV1 554 903 0 644 234 114 0 chr6 23776250 23776417 -165503137 - L1MB3 LINE L1 -154 6029 5844 5116 132 63 9 chr6 23776554 23777393 -165502161 + MER4D LTR ERV1 1 884 -19 2423 87 0 0 chr6 23777398 23777698 -165501856 - AluSq SINE Alu -13 300 1 918 191 13 74 chr6 23778350 23778581 -165500973 - AluJo SINE Alu -9 303 87 2468 54 3 3 chr6 23779609 23779907 -165499647 + AluSp SINE Alu 1 298 -15 180 0 0 0 chr6 23780746 23780766 -165498788 + (TG)n Simple_repeat Simple_repeat 1 20 0 1518 149 23 50 chr6 23780836 23781137 -165498417 + AluJb SINE Alu 1 293 -19 342 0 0 0 chr6 23781659 23781697 -165497857 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 1641 160 80 0 chr6 23781699 23781987 -165497567 - AluSx SINE Alu -1 311 1 278 339 80 9 chr6 23782181 23782293 -165497261 + L2 LINE L2 3148 3267 -5 21 36 0 0 chr6 23782544 23782572 -165496982 + AT_rich Low_complexity Low_complexity 1 28 0 256 180 20 0 chr6 23783929 23783979 -165495575 + LTR16C LTR ERVL 71 121 -370 424 179 152 0 chr6 23786577 23786689 -165492865 - L1MB4 LINE L1 -2 6178 6050 1416 126 50 14 chr6 23787754 23787976 -165491578 - MER30 DNA MER1_type 0 230 1 1263 125 0 6 chr6 23788063 23788239 -165491315 + AluJo SINE Alu 1 175 -137 1586 223 142 15 chr6 23788473 23788982 -165490572 - MLT1F1 LTR MaLR 0 567 1 2667 42 0 0 chr6 23789136 23789444 -165490110 - AluY SINE Alu -3 308 1 837 241 111 31 chr6 23789462 23789752 -165489802 - MSTD LTR MaLR -51 345 21 652 239 171 14 chr6 23789770 23789992 -165489562 - MIR SINE MIR -1 261 5 434 338 61 3 chr6 23790047 23790340 -165489214 - L1ME3A LINE L1 -208 5962 5653 2471 138 59 7 chr6 23790449 23790854 -165488700 + MSTA LTR MaLR 1 426 -2 1591 157 20 24 chr6 23790865 23791159 -165488395 - MLT1B LTR MaLR 0 390 98 920 138 0 8 chr6 23791166 23791296 -165488258 - FLAM_C SINE Alu -14 129 1 748 135 0 0 chr6 23791296 23791400 -165488154 - MLT1B LTR MaLR -281 109 6 543 130 0 22 chr6 23791447 23791539 -165488015 + MER65A LTR ERV1 1 90 -355 348 188 0 0 chr6 23791543 23791607 -165487947 + FLAM SINE Alu 69 132 -1 2001 77 0 40 chr6 23794530 23794804 -165484750 + AluY SINE Alu 35 297 -14 359 253 0 21 chr6 23795529 23795624 -165483930 + L3 LINE CR1 1481 1573 -4 309 89 0 0 chr6 23795929 23795974 -165483580 + (TG)n Simple_repeat Simple_repeat 2 46 0 229 316 97 26 chr6 23796429 23796543 -165483011 - L2 LINE L2 -6 3266 3145 260 27 27 0 chr6 23796740 23796777 -165482777 + (GA)n Simple_repeat Simple_repeat 1 38 0 332 279 27 108 chr6 23796856 23797078 -165482476 + MIR SINE MIR 6 209 -53 2114 90 0 21 chr6 23797081 23797396 -165482158 + AluY SINE Alu 1 309 0 2085 116 0 3 chr6 23797399 23797726 -165481828 + AluSx SINE Alu 1 326 0 394 216 11 11 chr6 23798192 23798280 -165481274 + L2 LINE L2 3224 3311 -2 206 361 83 10 chr6 23798286 23798491 -165481063 - L2 LINE L2 -25 3247 3028 554 211 23 76 chr6 23798527 23798618 -165480936 + MER97a DNA MER1_type? 13 92 -802 1778 123 80 4 chr6 23798618 23798894 -165480660 + AluSg SINE Alu 7 303 -7 554 211 23 76 chr6 23798894 23798973 -165480581 + MER97a DNA MER1_type? 92 174 -720 2061 84 40 0 chr6 23798975 23799283 -165480271 + AluSq SINE Alu 1 319 0 924 138 0 8 chr6 23799359 23799489 -165480065 + AluSg SINE Alu 6 134 -176 2090 114 3 26 chr6 23799489 23799796 -165479758 + AluSx SINE Alu 1 300 -12 2373 93 7 0 chr6 23799796 23800097 -165479457 + AluSp SINE Alu 1 303 -10 1899 140 0 0 chr6 23801605 23801877 -165477677 + AluSp SINE Alu 1 272 -41 546 310 29 8 chr6 23802119 23802361 -165477193 - L2 LINE L2 -1242 2072 1826 412 254 79 9 chr6 23802447 23802561 -165476993 + MIR SINE MIR 78 199 -63 2561 165 22 40 chr6 23802681 23803184 -165476370 - L1MB2 LINE L1 -2 6169 5676 2408 89 3 6 chr6 23803745 23804058 -165475496 + AluSx SINE Alu 1 312 0 2449 70 3 0 chr6 23804181 23804480 -165475074 - AluSc SINE Alu -9 300 1 1766 173 7 7 chr6 23804486 23804786 -165474768 - AluJo SINE Alu -12 300 1 1943 109 88 0 chr6 23805987 23806272 -165473282 - AluSp SINE Alu -2 311 2 207 0 0 0 chr6 23808312 23808335 -165471219 + (TA)n Simple_repeat Simple_repeat 2 24 0 252 0 0 0 chr6 23808386 23808414 -165471140 + (CA)n Simple_repeat Simple_repeat 2 29 0 2077 110 0 28 chr6 23812062 23812380 -165467174 - AluSq SINE Alu 0 311 2 2240 112 0 3 chr6 23812598 23812901 -165466653 + AluSc SINE Alu 1 302 -7 1646 155 34 34 chr6 23812912 23813208 -165466346 + AluJb SINE Alu 1 296 -16 689 252 53 0 chr6 23814010 23814161 -165465393 + MIR SINE MIR 3 161 -101 353 338 96 0 chr6 23815688 23815824 -165463730 - MIR SINE MIR -112 150 2 2203 119 13 7 chr6 23815911 23816221 -165463333 + AluSx SINE Alu 1 312 0 3113 132 17 25 chr6 23817033 23817511 -165462043 + MER101 LTR ERV1 1 474 0 449 280 104 26 chr6 23817591 23817786 -165461768 - MIR SINE MIR -7 255 46 367 294 37 0 chr6 23818510 23818619 -165460935 + MIR SINE MIR 113 225 -37 2358 100 7 0 chr6 23818803 23819113 -165460441 - AluSp SINE Alu -1 312 1 261 293 49 0 chr6 23820892 23820974 -165458580 + MIR SINE MIR 43 128 -80 947 237 25 25 chr6 23820983 23821219 -165458335 - MER115 DNA AcHobo 0 693 458 2269 84 7 0 chr6 23821572 23821857 -165457697 + AluSp SINE Alu 1 287 -26 599 208 9 0 chr6 23822366 23822472 -165457082 - AluSq/x SINE Alu -205 108 2 189 0 0 0 chr6 23822498 23822519 -165457035 + (A)n Simple_repeat Simple_repeat 1 21 0 1829 117 41 0 chr6 23822622 23822888 -165456666 - AluSq SINE Alu -32 281 5 1994 129 6 13 chr6 23822947 23823258 -165456296 - AluSq SINE Alu -4 309 1 232 222 69 0 chr6 23823352 23823424 -165456130 - L1ME LINE L1 -395 5726 5650 386 242 84 47 chr6 23823492 23823764 -165455790 - L1ME3A LINE L1 -4 6166 5839 2256 112 0 0 chr6 23823804 23824109 -165455445 - AluSq SINE Alu -8 305 1 1537 181 29 7 chr6 23824188 23824465 -165455089 - AluJo SINE Alu -29 283 1 422 189 0 22 chr6 23824465 23824555 -165454999 - L1ME3A LINE L1 -738 5440 5353 398 151 161 0 chr6 23824566 23824659 -165454895 - L1MA4 LINE L1 -1 6299 6192 * 953 272 46 48 chr6 23824650 23824730 -165454824 - L1ME3A LINE L1 -780 5366 5287 2368 63 7 3 chr6 23824730 23825029 -165454525 - AluY SINE Alu -11 300 1 953 272 46 48 chr6 23825029 23825444 -165454110 - L1ME3A LINE L1 -859 5287 4872 708 242 46 16 chr6 23826851 23827045 -165452509 - MIR SINE MIR 0 262 63 2638 59 3 0 chr6 23827109 23827415 -165452139 - AluSp SINE Alu -6 307 1 1855 102 88 0 chr6 23827661 23827935 -165451619 - AluSg SINE Alu -12 298 1 2202 119 0 0 chr6 23827937 23828230 -165451324 - AluSg SINE Alu -16 294 2 1882 160 10 0 chr6 23828334 23828622 -165450932 - AluJb SINE Alu -21 291 1 22 35 0 0 chr6 23828838 23828867 -165450687 + AT_rich Low_complexity Low_complexity 1 29 0 2338 83 0 20 chr6 23829105 23829405 -165450149 - AluSg SINE Alu -16 294 1 450 288 112 38 chr6 23829430 23829743 -165449811 - L1ME3 LINE L1 -206 5956 5621 892 212 27 54 chr6 23830136 23830358 -165449196 + MER20 DNA MER1_type 1 216 -3 342 247 0 0 chr6 23830364 23830437 -165449117 + MER20 DNA MER1_type 134 206 -13 1950 145 7 3 chr6 23830504 23830793 -165448761 + AluJb SINE Alu 1 290 -22 283 176 39 0 chr6 23833423 23833474 -165446080 + MIR SINE MIR 77 129 -133 2379 68 7 3 chr6 23833563 23833859 -165445695 - AluSc SINE Alu -12 297 1 879 235 6 0 chr6 23834339 23834518 -165445036 + MER58A DNA MER1_type 44 223 -1 342 0 0 0 chr6 23834574 23834612 -165444942 + (CA)n Simple_repeat Simple_repeat 2 39 0 182 214 24 0 chr6 23835563 23835605 -165443949 + MIR SINE MIR 214 256 -6 238 354 52 0 chr6 23835724 23835820 -165443734 - L2 LINE L2 -35 3237 3137 1217 202 48 61 chr6 23835980 23836315 -165443239 + MLT1A1 LTR MaLR 1 361 -35 1528 189 25 4 chr6 23836315 23836595 -165442959 - AluJo SINE Alu -26 286 1 313 209 15 0 chr6 23836595 23836662 -165442892 + MLT1A1 LTR MaLR 298 365 0 201 74 0 0 chr6 23837136 23837163 -165442391 + (CA)n Simple_repeat Simple_repeat 2 28 0 285 311 102 85 chr6 23838367 23838672 -165440882 - L2 LINE L2 -1 3271 2962 192 239 42 28 chr6 23838672 23838743 -165440811 + L2 LINE L2 2887 2958 -356 431 257 18 1 chr6 23839372 23839492 -165440062 - L1ME3A LINE L1 -5 6157 6038 2281 86 3 46 chr6 23839591 23839875 -165439679 + AluSp SINE Alu 1 271 -42 213 39 0 0 chr6 23839875 23839901 -165439653 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2281 86 3 46 chr6 23839901 23839943 -165439611 + AluSp SINE Alu 271 313 0 686 270 41 10 chr6 23840337 23840533 -165439021 + MIR SINE MIR 47 248 -14 1451 188 30 13 chr6 23840891 23841189 -165438365 + AluJo SINE Alu 10 312 0 1499 178 7 22 chr6 23841570 23841840 -165437714 - AluJo SINE Alu -46 266 1 1911 66 4 0 chr6 23842220 23842447 -165437107 - AluSx SINE Alu -84 228 1 183 162 0 0 chr6 23842597 23842634 -165436920 + (TATG)n Simple_repeat Simple_repeat 3 39 0 381 225 39 126 chr6 23842693 23842875 -165436679 - MIR SINE MIR -78 184 19 204 37 0 0 chr6 23842919 23842928 -165436626 + (CAA)n Simple_repeat Simple_repeat 3 11 -18 2310 56 7 3 chr6 23842928 23843215 -165436339 + AluY SINE Alu 1 288 -23 204 37 0 0 chr6 23843215 23843232 -165436322 + (CAA)n Simple_repeat Simple_repeat 10 29 0 2487 65 3 3 chr6 23843897 23844203 -165435351 + AluSx SINE Alu 1 306 -6 270 0 0 0 chr6 23844203 23844233 -165435321 + (TA)n Simple_repeat Simple_repeat 2 31 0 323 306 40 81 chr6 23844238 23844326 -165435228 - L3 LINE CR1 -637 940 850 1730 182 3 0 chr6 23844326 23844612 -165434942 - AluJo SINE Alu -21 291 5 323 306 40 81 chr6 23844612 23844745 -165434809 - L3 LINE CR1 -727 850 728 2483 84 0 0 chr6 23845052 23845360 -165434194 - AluSg SINE Alu -2 308 1 1388 69 6 0 chr6 23845591 23845766 -165433788 - AluY SINE Alu -6 305 130 2330 85 0 3 chr6 23845839 23846132 -165433422 - AluSc SINE Alu -17 292 1 1103 77 0 0 chr6 23846170 23846300 -165433254 - AluY SINE Alu -181 130 1 193 211 0 0 chr6 23846300 23846338 -165433216 - L3 LINE CR1 -911 666 629 500 294 132 41 chr6 23846441 23847267 -165432287 - L1MEc LINE L1 -4639 1757 857 21 0 0 0 chr6 23848682 23848703 -165430851 + AT_rich Low_complexity Low_complexity 1 21 0 2305 102 0 3 chr6 23848716 23849020 -165430534 - AluSg SINE Alu -7 303 1 1986 122 4 4 chr6 23849203 23849481 -165430073 - AluSx SINE Alu -12 300 23 337 266 79 36 chr6 23849522 23849661 -165429893 - L2 LINE L2 -8 3305 3161 2257 81 0 36 chr6 23849923 23850230 -165429324 + AluSg SINE Alu 1 296 -14 1804 158 21 0 chr6 23850317 23850602 -165428952 - Tigger3(Golem) DNA MER2_type -1 3028 2738 2259 103 0 3 chr6 23850602 23850912 -165428642 + AluY SINE Alu 1 309 -2 812 148 75 37 chr6 23850912 23851160 -165428394 - Tigger3(Golem) DNA MER2_type -574 2455 19 23 33 0 0 chr6 23852047 23852077 -165427477 + AT_rich Low_complexity Low_complexity 1 30 0 277 274 67 19 chr6 23852112 23852249 -165427305 + MIR3 SINE MIR 58 205 -3 205 292 14 28 chr6 23852369 23852441 -165427113 - MER5B DNA MER1_type -45 133 63 2304 99 0 0 chr6 23852447 23852749 -165426805 - AluSg SINE Alu -8 302 1 672 193 6 17 chr6 23853770 23853951 -165425603 + (TGG)n Simple_repeat Simple_repeat 1 179 0 * 715 128 41 21 chr6 23853936 23854179 -165425375 + (ATGGTG)n Simple_repeat Simple_repeat 1 248 0 1561 158 55 22 chr6 23854829 23855102 -165424452 + AluJb SINE Alu 7 288 -24 1775 118 0 0 chr6 23855700 23855938 -165423616 - AluSx SINE Alu -28 284 47 2266 108 0 3 chr6 23855946 23856243 -165423311 - AluSx SINE Alu -16 296 1 2304 123 0 0 chr6 23857474 23857782 -165421772 - AluSx SINE Alu -4 308 1 310 322 301 0 chr6 23858082 23858228 -165421326 + L2 LINE L2 3080 3269 -3 1200 118 139 224 chr6 23858756 23859224 -165420330 - MSTA LTR MaLR 0 428 1 1340 226 50 77 chr6 23859558 23859925 -165419629 - L1M4 LINE L1 -3264 2882 2530 1993 156 0 3 chr6 23859925 23860232 -165419322 - AluSx SINE Alu -6 306 1 1340 226 50 77 chr6 23860232 23860360 -165419194 - L1M4 LINE L1 -3616 2530 2400 2108 122 0 10 chr6 23860369 23860673 -165418881 - AluSx SINE Alu -11 301 1 2538 210 59 36 chr6 23860673 23861355 -165418199 - L1MD2 LINE L1 -70 6683 6018 2272 105 3 3 chr6 23861355 23861659 -165417895 + AluSg SINE Alu 2 305 -5 2538 210 59 36 chr6 23861659 23861973 -165417581 - L1MD2 LINE L1 -735 6018 5713 1766 162 54 3 chr6 23861973 23862269 -165417285 - AluJo SINE Alu -1 311 1 2538 210 59 36 chr6 23862269 23862858 -165416696 - L1MD2 LINE L1 -1040 5713 5139 2033 85 48 4 chr6 23862858 23863166 -165416388 - AluY SINE Alu 0 320 1 2538 210 59 36 chr6 23863166 23863370 -165416184 - L1MD2 LINE L1 -1614 5139 1705 611 209 7 2 chr6 23863367 23863523 -165416031 - L1MB4 LINE L1 0 6174 6012 * 349 241 155 0 chr6 23863503 23863619 -165415935 - L1MD2 LINE L1 -4823 1717 1584 * 1424 94 0 0 chr6 23863628 23863808 -165415746 - AluSg/x SINE Alu -3 309 130 2288 110 0 0 chr6 23863813 23864114 -165415440 - AluSx SINE Alu -11 301 1 1541 246 9 97 chr6 23864156 23864838 -165414716 - L1MD2 LINE L1 -4995 1548 927 273 348 41 37 chr6 23865436 23865680 -165413874 - L1MD2 LINE L1 -6279 261 17 1492 174 87 24 chr6 23865905 23866192 -165413362 + AluJo SINE Alu 1 305 -7 232 277 54 84 chr6 23866578 23866744 -165412810 - LTR33A LTR ERVL -6 517 357 233 234 62 31 chr6 23866907 23866971 -165412583 - LTR33A LTR ERVL -401 122 57 213 288 68 27 chr6 23867097 23867170 -165412384 + L2 LINE L2 3153 3228 -44 2388 92 0 0 chr6 23867490 23867793 -165411761 + AluSg SINE Alu 1 303 -7 315 250 90 10 chr6 23868267 23868367 -165411187 - MIR SINE MIR -14 248 141 2162 133 0 0 chr6 23868367 23868676 -165410878 - AluSx SINE Alu -3 309 1 24 0 0 0 chr6 23869423 23869447 -165410107 + AT_rich Low_complexity Low_complexity 1 24 0 350 250 24 65 chr6 23871666 23871790 -165407764 - L2 LINE L2 0 3313 3195 626 245 63 0 chr6 23872255 23872398 -165407156 + Charlie1 DNA MER1_type 2 153 -2608 2266 189 84 60 chr6 23872402 23872873 -165406681 + Charlie1 DNA MER1_type 2080 2538 -223 2043 134 0 0 chr6 23872873 23873165 -165406389 - AluSx SINE Alu -20 292 1 2266 189 84 60 chr6 23873165 23873299 -165406255 + Charlie1 DNA MER1_type 2538 2705 -56 843 154 15 0 chr6 23873299 23873429 -165406125 - FLAM_A SINE Alu -1 132 1 2266 189 84 60 chr6 23873429 23873488 -165406066 + Charlie1 DNA MER1_type 2705 2761 0 193 229 217 12 chr6 23874189 23874272 -165405282 + L2 LINE L2 2694 2793 -521 189 0 0 0 chr6 23874720 23874741 -165404813 + (TG)n Simple_repeat Simple_repeat 2 22 0 1760 182 22 14 chr6 23875207 23875578 -165403976 - MLT1A1 LTR MaLR 0 365 1 232 296 14 0 chr6 23875636 23875707 -165403847 + (ATGGTG)n Simple_repeat Simple_repeat 3 74 0 465 257 69 57 chr6 23875769 23875944 -165403610 - MIR SINE MIR -70 192 16 1620 155 3 71 chr6 23876529 23876838 -165402716 + AluJo SINE Alu 4 291 -21 338 347 8 8 chr6 23876888 23877009 -165402545 + MIR SINE MIR 33 153 -55 182 91 30 0 chr6 23877295 23877328 -165402226 + CT-rich Low_complexity Low_complexity 1 34 0 4406 240 58 17 chr6 23877374 23877604 -165401950 + L1MC4 LINE L1 6464 6683 -1359 356 71 18 0 chr6 23877604 23877660 -165401894 + (CA)n Simple_repeat Simple_repeat 1 57 0 4406 240 58 17 chr6 23877660 23878652 -165400902 + L1MC4 LINE L1 6683 7736 -306 360 273 0 0 chr6 23878643 23878731 -165400823 + L1MC4 LINE L1 7955 8042 0 * 860 255 59 8 chr6 23879047 23879286 -165400268 + MIR SINE MIR 12 262 0 1690 56 0 73 chr6 23879350 23879463 -165400091 + L1PA8 LINE L1 5956 6045 -127 2133 114 20 3 chr6 23879463 23879762 -165399792 + AluSg SINE Alu 3 306 -4 1690 56 0 73 chr6 23879762 23879882 -165399672 + L1PA8 LINE L1 6045 6172 0 320 268 28 0 chr6 23881147 23881218 -165398336 + MIR SINE MIR 14 86 -176 2140 149 0 0 chr6 23881267 23881576 -165397978 + AluSx SINE Alu 1 309 -3 2319 79 6 19 chr6 23882034 23882351 -165397203 + AluSq SINE Alu 1 313 0 1438 186 65 21 chr6 23882441 23882732 -165396822 - AluJo SINE Alu -8 304 1 3918 183 5 32 chr6 23884892 23885642 -165393912 - L1MB7 LINE L1 -19 6165 5436 225 289 98 123 chr6 23885691 23885729 -165393825 + L2 LINE L2 3036 3073 -199 2180 133 50 42 chr6 23885729 23886090 -165393464 - THE1B LTR MaLR 0 364 1 225 289 98 123 chr6 23886090 23886255 -165393299 + L2 LINE L2 3073 3234 -38 2355 95 3 0 chr6 23886431 23886735 -165392819 - AluSp SINE Alu -4 309 5 308 309 53 0 chr6 23887890 23887984 -165391570 + MIR SINE MIR 48 146 -116 2538 51 0 0 chr6 23888417 23888713 -165390841 - AluY SINE Alu -15 296 1 25 0 0 0 chr6 23888723 23888748 -165390806 + AT_rich Low_complexity Low_complexity 1 25 0 526 240 40 7 chr6 23888806 23888956 -165390598 - L1MD3 LINE L1 -5 7990 7836 379 308 60 14 chr6 23889066 23889231 -165390323 + MIR SINE MIR 12 186 -67 186 340 0 0 chr6 23889286 23889336 -165390218 - L3b LINE CR1 -255 1328 1279 447 259 74 19 chr6 23890647 23890809 -165388745 - MER112 DNA MER1_type 0 260 90 545 293 73 61 chr6 23891015 23891999 -165387555 - L1ME3A LINE L1 -233 5937 4924 366 261 65 65 chr6 23892023 23892190 -165387364 - L1ME3A LINE L1 -1325 4821 4652 2266 117 0 0 chr6 23892190 23892497 -165387057 - AluSx SINE Alu -5 307 1 366 261 65 65 chr6 23892497 23892654 -165386900 - L1ME3A LINE L1 -1493 4653 4497 1412 161 27 0 chr6 23892879 23893102 -165386452 + MER46A DNA MER2_type 8 236 0 387 41 0 0 chr6 23893976 23894025 -165385529 + (TG)n Simple_repeat Simple_repeat 1 49 0 352 328 91 20 chr6 23894588 23894786 -165384768 + MIR SINE MIR 32 243 -19 305 262 0 0 chr6 23895064 23895125 -165384429 + L2 LINE L2 3148 3208 -64 187 286 29 0 chr6 23896467 23896537 -165383017 - MIR SINE MIR -27 235 164 330 87 0 0 chr6 23897228 23897274 -165382280 + (TG)n Simple_repeat Simple_repeat 2 47 0 298 270 27 36 chr6 23897587 23897698 -165381856 + MIR3 SINE MIR 95 204 -4 742 100 91 0 chr6 23897985 23898095 -165381459 + AluSp/q SINE Alu 176 295 -18 323 301 35 26 chr6 23898263 23898376 -165381178 - MIR SINE MIR -95 167 54 858 244 5 29 chr6 23899120 23899329 -165380225 - MER3 DNA MER1_type -5 204 1 22 0 0 0 chr6 23902720 23902742 -165376812 + AT_rich Low_complexity Low_complexity 1 22 0 187 235 153 35 chr6 23903659 23903744 -165375810 - L3 LINE CR1 -781 796 702 338 370 72 24 chr6 23903769 23903977 -165375577 + MIR SINE MIR 45 262 0 1119 304 66 57 chr6 23903982 23904561 -165374993 - L3 LINE CR1 -876 701 118 30 0 0 0 chr6 23904897 23904927 -165374627 + AT_rich Low_complexity Low_complexity 1 30 0 376 362 119 4 chr6 23904957 23905192 -165374362 - MIR SINE MIR 0 262 1 22 35 0 0 chr6 23905351 23905380 -165374174 + AT_rich Low_complexity Low_complexity 1 29 0 2233 120 7 0 chr6 23905671 23905980 -165373574 + AluSx SINE Alu 1 311 -1 862 180 0 14 chr6 23907052 23907191 -165372363 - L1PA8A LINE L1 -2 6129 5993 2389 53 43 16 chr6 23907201 23907504 -165372050 - AluY SINE Alu 0 311 1 2328 105 3 0 chr6 23907814 23908119 -165371435 - AluSx SINE Alu -6 306 1 1837 185 0 10 chr6 23908154 23908468 -165371086 - AluJb SINE Alu -1 311 1 2452 80 0 3 chr6 23908478 23908789 -165370765 - AluY SINE Alu -1 310 1 865 163 39 79 chr6 23908789 23908967 -165370587 - FAM SINE Alu -4 171 1 1158 223 37 25 chr6 23909049 23909372 -165370182 + L1M4 LINE L1 2715 3041 -3105 279 228 83 119 chr6 23909424 23909540 -165370014 + L1ME3 LINE L1 5960 6068 -94 1799 209 48 19 chr6 23909540 23909917 -165369637 + MLT1B LTR MaLR 3 390 0 279 228 83 119 chr6 23909917 23909993 -165369561 + L1ME3 LINE L1 6068 6145 -17 196 164 104 45 chr6 23910164 23910231 -165369323 + MIR SINE MIR 160 230 -32 225 239 57 11 chr6 23910872 23910960 -165368594 + CT-rich Low_complexity Low_complexity 4 95 0 2842 162 96 23 chr6 23912741 23913302 -165366252 - MER6A DNA MER2_type -2 603 2 21 36 0 0 chr6 23913497 23913525 -165366029 + AT_rich Low_complexity Low_complexity 1 28 0 1796 70 0 0 chr6 23913844 23914059 -165365495 - AluSg/x SINE Alu -13 299 85 733 291 36 55 chr6 23914990 23915243 -165364311 - MIR SINE MIR 0 262 16 2168 61 61 7 chr6 23915985 23916265 -165363289 + AluSq SINE Alu 1 295 -18 2462 66 0 10 chr6 23916861 23917166 -165362388 - AluY SINE Alu -9 302 1 275 294 0 24 chr6 23917326 23917411 -165362143 + MER103 DNA DNA 68 150 -16 2075 101 40 0 chr6 23917583 23917861 -165361693 - AluSq SINE Alu -24 289 1 2230 99 18 27 chr6 23917941 23918275 -165361279 + MER1B DNA MER1_type 1 331 -8 1838 107 0 0 chr6 23918450 23918694 -165360860 + AluSg SINE Alu 1 244 -66 1455 217 14 0 chr6 23919613 23919890 -165359664 - AluJo SINE Alu -31 281 1 704 264 126 29 chr6 23920425 23920664 -165358890 + MIR SINE MIR 1 262 0 208 271 17 0 chr6 23923302 23923361 -165356193 - L3 LINE CR1 -863 714 655 1897 171 7 0 chr6 23924594 23924899 -165354655 - AluJo SINE Alu -5 307 1 1462 199 211 28 chr6 23924970 23925397 -165354157 - MLT1D LTR MaLR 0 505 1 1805 156 10 26 chr6 23926398 23926700 -165352854 - AluJb SINE Alu -15 297 1 303 283 75 33 chr6 23927116 23927236 -165352318 - MIR SINE MIR -73 189 65 1381 143 0 23 chr6 23927708 23927925 -165351629 + AluJo SINE Alu 84 295 -17 207 314 0 0 chr6 23930497 23930548 -165349006 - L2 LINE L2 -21 3251 3201 570 270 97 42 chr6 23930574 23930811 -165348743 + MIR SINE MIR 3 252 -10 223 312 78 0 chr6 23930831 23930908 -165348646 - MIR SINE MIR -150 112 30 255 307 59 0 chr6 23931027 23931128 -165348426 + AluYb8 SINE Alu 194 300 -8 226 283 0 22 chr6 23932707 23932799 -165346755 + (CAGAGA)n Simple_repeat Simple_repeat 4 93 0 405 261 94 13 chr6 23933154 23933452 -165346102 - L1ME4a LINE L1 -5 6116 5755 1374 217 16 4 chr6 23934229 23934487 -165345067 + Tigger7 DNA MER2_type 7 267 -2220 562 143 0 57 chr6 23934484 23934589 -165344965 + Tigger7 DNA MER2_type 2388 2486 -1 * 2087 133 17 0 chr6 23935041 23935343 -165344211 - AluSq SINE Alu -6 307 1 1839 169 3 10 chr6 23935343 23935650 -165343904 - AluJo SINE Alu -7 305 1 4826 118 16 42 chr6 23935798 23936570 -165342984 - L1PA16 LINE L1 0 6166 5415 1922 115 65 4 chr6 23937346 23937625 -165341929 + AluSx SINE Alu 1 296 -16 370 306 93 22 chr6 23937636 23937819 -165341735 - MIR SINE MIR -47 215 20 274 321 121 80 chr6 23937867 23938457 -165341097 - L2 LINE L2 0 3272 2665 228 100 0 0 chr6 23939629 23939669 -165339885 + (A)n Simple_repeat Simple_repeat 1 40 0 2418 87 3 10 chr6 23940225 23940537 -165339017 + AluSg SINE Alu 1 310 0 239 189 288 23 chr6 23940707 23940810 -165338744 + MIR SINE MIR 32 154 -65 21 36 0 0 chr6 23941027 23941055 -165338499 + AT_rich Low_complexity Low_complexity 1 28 0 192 200 43 0 chr6 23941368 23941438 -165338116 + CT-rich Low_complexity Low_complexity 3 75 0 7759 187 31 13 chr6 23941451 23943973 -165335581 - L1MB3 LINE L1 0 6183 3710 2066 132 30 0 chr6 23943973 23944269 -165335285 + AluSx SINE Alu 1 305 -7 7759 187 31 13 chr6 23944269 23944322 -165335232 - L1MB3 LINE L1 -2473 3710 3659 2276 119 0 10 chr6 23944322 23944633 -165334921 - AluSq SINE Alu -5 308 1 7759 187 31 13 chr6 23944633 23944657 -165334897 - L1MB3 LINE L1 -2524 3659 3547 333 110 41 14 chr6 23945128 23945201 -165334353 + CT-rich Low_complexity Low_complexity 4 78 0 1234 177 100 17 chr6 23945217 23945516 -165334038 - MER33 DNA MER1_type 0 324 1 351 0 0 0 chr6 23947070 23947109 -165332445 + (TAAAA)n Simple_repeat Simple_repeat 4 42 0 1142 167 30 73 chr6 23947365 23947599 -165331955 - AluJb SINE Alu -6 306 83 526 261 167 22 chr6 23947751 23947973 -165331581 + MIR SINE MIR 9 262 0 393 22 0 0 chr6 23948135 23948181 -165331373 + (TG)n Simple_repeat Simple_repeat 1 46 0 256 270 112 34 chr6 23949375 23949553 -165330001 + MIR SINE MIR 14 205 -57 2156 110 0 26 chr6 23950203 23950511 -165329043 - AluSg SINE Alu -10 300 1 218 299 118 10 chr6 23950900 23951017 -165328537 + MIR SINE MIR 32 162 -46 2250 114 0 0 chr6 23951288 23951586 -165327968 - AluSx SINE Alu -14 298 1 22 0 0 0 chr6 23952390 23952412 -165327142 + AT_rich Low_complexity Low_complexity 1 22 0 302 347 8 8 chr6 23953146 23953267 -165326287 + MIR SINE MIR 29 149 -113 2121 100 17 0 chr6 23953489 23953780 -165325774 - AluY SINE Alu -15 296 1 2337 109 16 35 chr6 23954558 23954926 -165324628 + THE1B LTR MaLR 1 361 -3 244 253 58 23 chr6 23954942 23955029 -165324525 - MIR SINE MIR -109 153 64 480 295 75 44 chr6 23955340 23955567 -165323987 - MIR SINE MIR 0 262 29 25 0 0 0 chr6 23956094 23956119 -165323435 + AT_rich Low_complexity Low_complexity 1 25 0 425 318 105 76 chr6 23956247 23956590 -165322964 - L2 LINE L2 -6 3266 2914 2364 105 0 9 chr6 23956877 23957192 -165322362 - AluSx SINE Alu 0 312 1 813 98 33 0 chr6 23957197 23957319 -165322235 - L1PA16 LINE L1 -13 6153 6028 351 0 0 0 chr6 23958119 23958158 -165321396 + (CA)n Simple_repeat Simple_repeat 2 40 0 181 305 85 0 chr6 23959159 23959218 -165320336 + L2 LINE L2 3246 3309 -4 2295 57 40 3 chr6 23959926 23960222 -165319332 - AluY SINE Alu -4 307 1 21 0 0 0 chr6 23960409 23960430 -165319124 + AT_rich Low_complexity Low_complexity 1 21 0 1513 133 44 4 chr6 23960636 23960861 -165318693 + AluJb SINE Alu 1 234 -78 243 0 0 0 chr6 23960863 23960890 -165318664 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 870 190 105 10 chr6 23960964 23961164 -165318390 - MER20 DNA MER1_type 0 219 1 370 307 62 17 chr6 23963066 23963262 -165316292 + MIR SINE MIR 16 218 -44 252 0 0 0 chr6 23964444 23964472 -165315082 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2225 121 0 0 chr6 23964888 23965193 -165314361 + AluSx SINE Alu 1 305 -7 1564 189 3 28 chr6 23966449 23966766 -165312788 + AluJb SINE Alu 1 309 -3 1807 89 0 0 chr6 23966921 23967145 -165312409 + AluSx SINE Alu 1 224 -88 328 257 80 52 chr6 23967716 23967965 -165311589 + L1ME LINE L1 5561 5816 -305 286 180 66 0 chr6 23968343 23968404 -165311150 - L2 LINE L2 0 3313 3249 2232 121 0 0 chr6 23968542 23968839 -165310715 + AluSq SINE Alu 1 297 -16 2053 203 58 37 chr6 23971050 23971670 -165307884 - L1MC3 LINE L1 -1 7784 7152 190 247 118 54 chr6 23971672 23971765 -165307789 + MIR SINE MIR 164 262 0 2191 116 30 0 chr6 23972969 23973272 -165306282 - AluSx SINE Alu 0 312 1 261 0 0 0 chr6 23973510 23973539 -165306015 + (TG)n Simple_repeat Simple_repeat 2 30 0 716 264 56 44 chr6 23973600 23973960 -165305594 + MLT1I LTR MaLR 46 409 0 366 80 0 0 chr6 23974252 23974302 -165305252 + (CA)n Simple_repeat Simple_repeat 2 51 0 200 200 0 25 chr6 23975235 23975275 -165304279 + CT-rich Low_complexity Low_complexity 2 40 0 581 269 114 14 chr6 23976939 23977300 -165302254 - HAL1 LINE L1 -1043 1464 1068 3940 91 6 0 chr6 23977301 23977842 -165301712 + L1PA10 LINE L1 5612 6155 -13 234 211 19 0 chr6 23978609 23978661 -165300893 + CT-rich Low_complexity Low_complexity 1 53 0 29 0 0 0 chr6 23978837 23978866 -165300688 + AT_rich Low_complexity Low_complexity 1 29 0 647 62 0 21 chr6 23979407 23979504 -165300050 + AluSx SINE Alu 214 308 -2 25 31 0 0 chr6 23979577 23979609 -165299945 + AT_rich Low_complexity Low_complexity 1 32 0 1470 187 39 14 chr6 23979622 23979906 -165299648 - AluJb SINE Alu -21 291 1 315 0 0 0 chr6 23980685 23980720 -165298834 + (TAA)n Simple_repeat Simple_repeat 1 35 0 21 36 0 0 chr6 23981424 23981452 -165298102 + AT_rich Low_complexity Low_complexity 1 28 0 642 293 250 5 chr6 23981556 23982023 -165297531 - L2 LINE L2 -41 3272 2666 1202 196 4 13 chr6 23982023 23982248 -165297306 - MER58A DNA MER1_type 0 224 2 761 181 142 60 chr6 23982612 23982893 -165296661 - MER33 DNA MER1_type 0 324 21 2356 101 10 7 chr6 23983177 23983485 -165296069 - AluSx SINE Alu -3 309 1 1724 175 3 32 chr6 23983910 23984219 -165295335 - AluJb SINE Alu -12 300 1 1363 119 0 30 chr6 23984219 23984421 -165295133 + AluJb SINE Alu 115 310 -2 901 262 33 0 chr6 23985168 23985378 -165294176 - MIR SINE MIR -39 223 7 238 333 73 18 chr6 23987366 23987531 -165292023 + MIR SINE MIR 14 187 -75 420 220 89 3 chr6 23987588 23987715 -165291839 + L1ME2 LINE L1 3523 3659 -2487 1612 275 23 17 chr6 23987780 23988423 -165291131 + L1ME2 LINE L1 3797 4443 -1703 658 173 0 16 chr6 23988424 23988551 -165291003 + 7SK RNA RNA 1 125 -68 466 66 0 0 chr6 23988601 23988662 -165290892 + 7SK RNA RNA 133 193 0 2283 241 99 17 chr6 23988662 23989344 -165290210 + L1ME2 LINE L1 4431 5056 -1110 1932 149 10 10 chr6 23989344 23989646 -165289908 + AluJb SINE Alu 1 302 -10 2283 241 99 17 chr6 23989646 23990535 -165289019 + L1ME2 LINE L1 5056 6148 -18 252 293 24 42 chr6 23990557 23990769 -165288785 + L1MC4 LINE L1 7834 8041 -1 302 280 13 0 chr6 23991536 23991611 -165287943 - MIR3 SINE MIR -17 191 116 2666 227 69 39 chr6 23992307 23994262 -165285292 - L1ME1 LINE L1 -5 6555 4544 480 90 0 0 chr6 23994260 23994327 -165285227 + L1PA16 LINE L1 6061 6127 -39 * 267 248 83 8 chr6 23994325 23994446 -165285108 - L1ME1 LINE L1 -2248 4292 4163 * 1442 136 50 12 chr6 23994451 23994693 -165284861 - Tigger3(Golem) DNA MER2_type -7 3022 2772 233 200 0 0 chr6 23994690 23994730 -165284824 - Tigger3(Golem) DNA MER2_type -2887 142 103 * 757 183 0 16 chr6 23994730 23994856 -165284698 - Tigger3(Golem) DNA MER2_type -2905 124 1 375 333 64 4 chr6 23994864 23995113 -165284441 - L1ME1 LINE L1 -2383 4157 3894 28 29 0 0 chr6 23995118 23995153 -165284401 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr6 23995224 23995259 -165284295 + AT_rich Low_complexity Low_complexity 1 35 0 255 243 151 19 chr6 23995268 23995474 -165284080 - L1ME1 LINE L1 -2702 3838 3606 772 138 0 0 chr6 23995480 23995596 -165283958 - Tigger3(Golem) DNA MER2_type -95 2934 2819 291 174 228 0 chr6 23995537 23995629 -165283925 + Tigger3(Golem) DNA MER2_type 2828 2940 -89 * 1895 273 44 52 chr6 23995795 23996045 -165283509 - L1ME1 LINE L1 -4029 2511 2261 806 168 8 0 chr6 23996045 23996176 -165283378 + FLAM_C SINE Alu 1 132 -1 1895 273 44 52 chr6 23996176 23997026 -165282528 - L1ME1 LINE L1 -4279 2261 1406 2393 142 23 2 chr6 23997026 23997421 -165282133 + MER57A LTR ERV1 1 403 0 1895 273 44 52 chr6 23997421 23997477 -165282077 - L1ME1 LINE L1 -5134 1406 1361 1995 152 30 30 chr6 23997477 23997840 -165281714 - THE1B LTR MaLR -1 363 1 1895 273 44 52 chr6 23997840 23997859 -165281695 - L1ME1 LINE L1 -5179 1361 1343 1514 163 32 104 chr6 23997865 23998240 -165281314 + MER7A DNA MER2_type 1 346 0 295 275 36 84 chr6 23998519 23998686 -165280868 - L1ME1 LINE L1 -5522 1008 850 358 295 109 67 chr6 23998844 23999129 -165280425 - L1ME1 LINE L1 -6187 353 57 1433 131 65 128 chr6 23999230 23999551 -165280003 + AluJo SINE Alu 1 301 -11 1237 236 74 54 chr6 24000609 24001108 -165278446 - L1ME2 LINE L1 -1 6163 5655 386 337 53 24 chr6 24001456 24001625 -165277929 + L2 LINE L2 3098 3271 -1 189 0 0 0 chr6 24001913 24001934 -165277620 + (CA)n Simple_repeat Simple_repeat 2 22 0 529 286 108 25 chr6 24004566 24004807 -165274747 - L2 LINE L2 -17 3296 3036 1426 152 156 7 chr6 24004928 24005198 -165274356 - AluJb SINE Alu -2 310 1 22 35 0 0 chr6 24005213 24005242 -165274312 + AT_rich Low_complexity Low_complexity 1 29 0 2669 220 93 17 chr6 24005255 24006025 -165273529 - L1ME2 LINE L1 -137 6027 5146 2259 118 0 0 chr6 24006025 24006329 -165273225 - AluSx SINE Alu -8 304 1 2669 220 93 17 chr6 24006329 24006644 -165272910 - L1ME2 LINE L1 -1018 5146 4856 988 291 103 28 chr6 24006660 24007193 -165272361 + L1MCc LINE L1 26 598 -5825 531 259 61 0 chr6 24007418 24007565 -165271989 - MIR SINE MIR -105 157 2 345 352 58 46 chr6 24007565 24007959 -165271595 - L2 LINE L2 -1229 2085 1687 2323 109 7 0 chr6 24007961 24008264 -165271290 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr6 24009875 24009897 -165269657 + AT_rich Low_complexity Low_complexity 1 22 0 313 192 55 0 chr6 24010829 24010902 -165268652 - L1MC3 LINE L1 -1139 6646 6570 378 0 0 0 chr6 24010940 24010982 -165268572 + (CA)n Simple_repeat Simple_repeat 2 43 0 2030 114 48 0 chr6 24010991 24011280 -165268274 - AluSx SINE Alu -9 303 1 257 279 59 0 chr6 24012079 24012147 -165267407 + MIR SINE MIR 107 178 -84 22 0 0 0 chr6 24013394 24013416 -165266138 + AT_rich Low_complexity Low_complexity 1 22 0 194 264 69 28 chr6 24013564 24013636 -165265918 - MIR SINE MIR -70 192 118 198 0 0 0 chr6 24014224 24014246 -165265308 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 233 305 133 9 chr6 24016501 24016606 -165262948 + MIR SINE MIR 104 221 -41 1787 173 6 19 chr6 24016762 24017074 -165262480 - AluJb SINE Alu -4 308 1 299 316 0 0 chr6 24021559 24021638 -165257916 - L2 LINE L2 -5 3267 3189 213 39 0 0 chr6 24021948 24021974 -165257580 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 2539 126 70 108 chr6 24023090 24023269 -165256285 - LTR49 LTR ERV1 -7 588 404 1598 175 0 69 chr6 24023269 24023469 -165256085 - AluJo SINE Alu 0 312 100 1820 149 0 11 chr6 24023469 24023750 -165255804 + AluSx SINE Alu 1 278 -34 369 0 0 0 chr6 24023760 24023801 -165255753 + (TG)n Simple_repeat Simple_repeat 2 42 0 204 67 0 0 chr6 24023800 24023830 -165255724 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 1598 175 0 69 chr6 24023801 24023950 -165255604 - AluJo SINE Alu -221 91 4 2539 126 70 108 chr6 24023950 24023968 -165255586 - LTR49 LTR ERV1 -191 404 387 2664 29 7 0 chr6 24023968 24024277 -165255277 - AluY SINE Alu 0 311 1 2265 110 0 3 chr6 24024286 24024595 -165254959 - AluSg SINE Alu -2 308 1 2539 126 70 108 chr6 24024595 24024997 -165254557 - LTR49 LTR ERV1 -216 379 1 317 234 28 8 chr6 24025523 24025646 -165253908 + L1MC4 LINE L1 1996 6983 -1339 * 339 253 0 22 chr6 24025638 24025729 -165253825 + L1MC4 LINE L1 6895 6983 -1339 300 111 0 0 chr6 24025738 24025783 -165253771 + (TG)n Simple_repeat Simple_repeat 2 46 0 249 213 0 0 chr6 24026258 24026305 -165253249 - MIR SINE MIR -122 140 94 2227 97 0 35 chr6 24026517 24026827 -165252727 - AluSx SINE Alu -12 300 2 2213 109 0 0 chr6 24027076 24027380 -165252174 + AluSx SINE Alu 1 304 -8 1906 152 0 23 chr6 24027464 24027774 -165251780 - AluJb SINE Alu -3 309 7 7725 194 27 23 chr6 24029204 24031752 -165247802 - L1PA15 LINE L1 0 6165 3594 231 357 0 0 chr6 24031815 24031885 -165247669 - MIR SINE MIR -188 74 5 26 30 0 0 chr6 24032075 24032108 -165247446 + AT_rich Low_complexity Low_complexity 1 33 0 4512 169 53 4 chr6 24032108 24033262 -165246292 - L1PB4 LINE L1 -4 6152 4944 2098 119 80 14 chr6 24033673 24034025 -165245529 + THE1C LTR MaLR 1 375 0 646 90 0 0 chr6 24034428 24034517 -165245037 - AluSp/q SINE Alu -7 306 218 461 306 119 96 chr6 24034525 24036002 -165243552 + L2 LINE L2 1616 3127 -145 2385 202 87 14 chr6 24036002 24036566 -165242988 - MER77 LTR ERV1 0 605 1 461 306 119 96 chr6 24036566 24036716 -165242838 + L2 LINE L2 3127 3272 0 280 232 16 40 chr6 24037018 24037143 -165242411 + (CATAT)n Simple_repeat Simple_repeat 2 123 0 780 166 13 0 chr6 24037512 24037663 -165241891 + L1MC3 LINE L1 6961 7113 -672 285 277 36 0 chr6 24037666 24037749 -165241805 + MLT1F1 LTR MaLR 54 139 -428 2780 132 83 17 chr6 24037754 24038283 -165241271 + L1MC3 LINE L1 7202 7765 -20 469 294 81 30 chr6 24039436 24039633 -165239921 + MIR SINE MIR 20 226 -36 594 272 157 7 chr6 24039753 24039956 -165239598 + MIR SINE MIR 3 235 -27 255 286 109 41 chr6 24040121 24040268 -165239286 - MARNA DNA Mariner -83 503 347 271 340 7 100 chr6 24042394 24042544 -165237010 - MIR3 SINE MIR -63 145 10 1795 131 13 61 chr6 24042744 24043056 -165236498 - AluJb SINE Alu -15 297 1 600 366 83 18 chr6 24043208 24043604 -165235950 + L3 LINE CR1 931 1352 -225 520 117 0 0 chr6 24043647 24043724 -165235830 - Alu SINE Alu -2 310 234 225 216 34 102 chr6 24095005 24095093 -165184461 + L2 LINE L2 3156 3237 -76 489 343 47 0 chr6 24095508 24095680 -165183874 + MIR3 SINE MIR 16 195 -13 611 266 56 20 chr6 24095727 24095980 -165183574 - MIR SINE MIR 0 262 2 * 685 318 104 45 chr6 24095980 24096371 -165183183 + L2 LINE L2 2866 3281 -32 225 0 0 0 chr6 24097627 24097652 -165181902 + (TG)n Simple_repeat Simple_repeat 2 26 0 1418 100 23 77 chr6 24098208 24098469 -165181085 + AluY SINE Alu 29 275 -36 3151 211 48 26 chr6 24098628 24099555 -165179999 - L1M2c LINE L1 -4458 2331 1385 305 310 89 13 chr6 24099960 24100118 -165179436 + MIR SINE MIR 79 248 -14 2172 199 69 2 chr6 24100222 24100658 -165178896 - MER70A LTR ERVL -5 467 3 542 243 117 24 chr6 24100773 24100979 -165178575 - MIR SINE MIR -1 261 37 422 222 72 52 chr6 24101679 24101823 -165177731 - MER112 DNA MER1_type -31 229 80 2987 215 23 8 chr6 24101823 24102466 -165177088 + MER82 DNA MER2_type 1 653 0 224 244 37 85 chr6 24102909 24102991 -165176563 + MIR SINE MIR 50 127 -81 218 213 38 12 chr6 24103096 24103176 -165176378 + (TA)n Simple_repeat Simple_repeat 2 83 0 882 217 0 0 chr6 24104985 24105146 -165174408 + FRAM SINE Alu 4 164 -2 1333 231 71 47 chr6 24105533 24105984 -165173570 - MLT1C LTR MaLR 0 467 6 1370 242 104 23 chr6 24106197 24107162 -165172392 + L1MC4 LINE L1 6472 7666 -376 1330 13 0 0 chr6 24107330 24107481 -165172073 + L1PA5 LINE L1 5993 6143 -11 30 27 0 0 chr6 24107481 24107518 -165172036 + AT_rich Low_complexity Low_complexity 1 37 0 1852 168 14 0 chr6 24108710 24108995 -165170559 + AluJb SINE Alu 9 297 -15 845 244 24 0 chr6 24109582 24109791 -165169763 + MER58A DNA MER1_type 4 217 -7 2243 104 0 17 chr6 24110321 24110618 -165168936 + AluSx SINE Alu 11 302 -10 1134 243 19 26 chr6 24111833 24112142 -165167412 - MER21B LTR ERV1 -460 403 97 375 228 0 13 chr6 24112194 24112273 -165167281 - MER21B LTR ERV1 -774 89 12 2117 176 61 117 chr6 24112692 24113427 -165166127 - LTR8A LTR ERV1 0 727 34 1082 226 51 72 chr6 24113440 24113910 -165165644 + MER39 LTR ERV1 248 707 0 2202 113 7 0 chr6 24114777 24115070 -165164484 - AluSc SINE Alu -14 295 1 183 246 148 0 chr6 24116151 24116212 -165163342 - L2 LINE L2 -15 3257 3188 204 244 0 93 chr6 24116707 24116793 -165162761 + MIR SINE MIR 114 191 -71 2108 107 61 35 chr6 24116855 24117170 -165162384 + MLT1B LTR MaLR 6 334 -56 2377 111 0 20 chr6 24117170 24117511 -165162043 + MER1B DNA MER1_type 1 334 -3 2108 107 61 35 chr6 24117511 24117570 -165161984 + MLT1B LTR MaLR 334 390 0 234 245 281 22 chr6 24117950 24118089 -165161465 - MIR SINE MIR -76 186 12 200 318 82 45 chr6 24118832 24118942 -165160612 + L2 LINE L2 2999 3112 -160 575 257 72 0 chr6 24119935 24120157 -165159397 + L1MB7 LINE L1 5947 6184 0 1036 196 107 66 chr6 24120760 24121107 -165158447 + MLT1A2 LTR MaLR 1 361 -13 2176 143 24 14 chr6 24121590 24121961 -165157593 - THE1C LTR MaLR 0 375 1 370 278 63 8 chr6 24122170 24122296 -165157258 + MER94 DNA DNA 2 134 0 553 321 101 36 chr6 24122757 24123353 -165156201 + L1MEd LINE L1 700 1386 -4846 437 383 17 48 chr6 24123347 24123702 -165155852 + L1MEc LINE L1 223 566 -6021 * 2271 112 7 0 chr6 24124113 24124416 -165155138 + AluSx SINE Alu 1 305 -7 251 280 42 14 chr6 24124487 24124698 -165154856 + L1MEc LINE L1 1118 1335 -5071 383 263 75 56 chr6 24124774 24125093 -165154461 + L1MEc LINE L1 1541 1865 -4722 360 226 91 19 chr6 24125190 24125398 -165154156 + L1MEc LINE L1 2317 2539 -4048 1336 202 67 27 chr6 24125981 24126312 -165153242 - MER2 DNA MER2_type 0 344 1 1296 189 49 65 chr6 24127944 24128251 -165151303 - AluJo SINE Alu -10 302 1 6672 128 47 18 chr6 24129003 24130198 -165149356 + Tigger3b DNA MER2_type 3 1231 0 227 312 0 64 chr6 24130250 24130375 -165149179 - MLT1I LTR MaLR -195 214 98 227 213 96 43 chr6 24130344 24130438 -165149116 - MLT1H LTR MaLR -389 160 62 463 293 57 0 chr6 24130750 24130907 -165148647 - MIR SINE MIR -13 249 84 578 314 90 42 chr6 24130974 24131308 -165148246 - L3 LINE CR1 -100 1477 1128 1432 282 54 24 chr6 24132478 24132665 -165146889 + MLT1D LTR MaLR 1 181 -324 234 0 0 0 chr6 24132665 24132691 -165146863 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 1432 282 54 24 chr6 24132691 24133105 -165146449 + MLT1D LTR MaLR 181 505 0 1328 173 101 36 chr6 24134916 24135194 -165144360 - AluJb SINE Alu -16 296 1 328 267 30 0 chr6 24136041 24136142 -165143412 - MER5A DNA MER1_type -76 113 10 22 56 0 0 chr6 24136618 24136654 -165142900 + AT_rich Low_complexity Low_complexity 1 36 0 407 281 41 20 chr6 24138599 24138745 -165140809 + L2 LINE L2 537 685 -2629 266 290 32 40 chr6 24138802 24138926 -165140628 + MLT1I LTR MaLR 99 221 -188 3687 300 108 7 chr6 24139103 24140545 -165139009 + L2 LINE L2 691 2277 -1037 2242 105 26 42 chr6 24140859 24141240 -165138314 + THE1C LTR MaLR 1 375 0 25 0 0 0 chr6 24141444 24141469 -165138085 + AT_rich Low_complexity Low_complexity 1 25 0 2433 22 0 4 chr6 24141520 24141797 -165137757 + AluYa5 SINE Alu 36 311 0 279 319 175 19 chr6 24141924 24142084 -165137470 + MIR3 SINE MIR 11 195 -13 364 206 103 59 chr6 24142937 24143141 -165136413 + MLT1K LTR MaLR 357 569 -19 1257 220 117 93 chr6 24143483 24144191 -165135363 - MER50 LTR ERV1 0 734 10 831 302 64 41 chr6 24144560 24144956 -165134598 - HERV16 LTR ERVL -4279 717 303 799 222 16 11 chr6 24144956 24145141 -165134413 + MER5A DNA MER1_type 2 187 -2 831 302 64 41 chr6 24145141 24145304 -165134250 - HERV16 LTR ERVL -4693 303 145 268 236 0 0 chr6 24145364 24145419 -165134135 + MLT1K LTR MaLR 534 588 0 1234 261 59 39 chr6 24146242 24146683 -165132871 - LTR16A1 LTR ERVL -2 455 6 479 240 64 0 chr6 24146730 24146855 -165132699 - MIR SINE MIR -9 253 121 1793 193 56 13 chr6 24147299 24147673 -165131881 + MLT1B LTR MaLR 1 390 0 2041 161 23 40 chr6 24147790 24147858 -165131696 - MLT1B LTR MaLR 0 390 322 2377 95 0 0 chr6 24147858 24148164 -165131390 - AluSc SINE Alu -3 306 1 2041 161 23 40 chr6 24148164 24148492 -165131062 - MLT1B LTR MaLR -68 322 1 981 240 128 58 chr6 24148883 24149345 -165130209 + LTR33A LTR ERVL 1 494 -29 239 306 0 14 chr6 24149971 24150043 -165129511 + MER5B DNA MER1_type 106 176 -2 1867 150 42 36 chr6 24150182 24150542 -165129012 + THE1B LTR MaLR 1 362 -2 2800 115 49 0 chr6 24150773 24151181 -165128373 + MSTC LTR MaLR 1 428 0 465 317 75 22 chr6 24152622 24152849 -165126705 + MIR SINE MIR 1 239 -23 394 322 106 21 chr6 24153546 24153782 -165125772 + MIR SINE MIR 1 256 -6 227 253 173 0 chr6 24154580 24154655 -165124899 - MIR3 SINE MIR 0 208 121 314 350 142 9 chr6 24154826 24155052 -165124502 + MIR SINE MIR 3 258 -4 9513 200 46 4 chr6 24155074 24157338 -165122216 + L1PBa LINE L1 2660 5012 -1850 27 0 0 0 chr6 24158407 24158434 -165121120 + AT_rich Low_complexity Low_complexity 1 27 0 46 0 0 18 chr6 24158534 24158575 -165120979 + AT_rich Low_complexity Low_complexity 1 42 -14 2169 55 55 7 chr6 24158575 24158846 -165120708 + AluY SINE Alu 6 289 -22 46 0 0 18 chr6 24158846 24158861 -165120693 + AT_rich Low_complexity Low_complexity 42 56 0 301 364 42 12 chr6 24158953 24159118 -165120436 + MIR3 SINE MIR 10 179 -29 21 71 0 0 chr6 24159190 24159232 -165120322 + AT_rich Low_complexity Low_complexity 1 42 0 1210 274 48 60 chr6 24159407 24159910 -165119644 - LTR33 LTR ERVL -24 497 1 555 298 19 6 chr6 24160600 24160761 -165118793 - MIR SINE MIR -98 164 2 255 400 62 0 chr6 24160874 24161004 -165118550 + L2 LINE L2 3134 3271 -1 406 260 142 81 chr6 24161844 24162046 -165117508 + MLT1I LTR MaLR 142 363 -46 2496 81 0 0 chr6 24162046 24162354 -165117200 - AluSg SINE Alu -2 308 1 406 260 142 81 chr6 24162354 24162397 -165117157 + MLT1I LTR MaLR 363 402 -7 210 291 38 25 chr6 24162819 24162898 -165116656 + L2 LINE L2 3234 3313 0 28 79 0 0 chr6 24163259 24163322 -165116232 + AT_rich Low_complexity Low_complexity 1 63 0 191 214 0 0 chr6 24163384 24163426 -165116128 + L3b LINE CR1 1363 1404 -179 331 216 284 0 chr6 24163927 24164015 -165115539 - L2 LINE L2 -1 3312 3200 237 431 57 8 chr6 24164068 24164191 -165115363 + L2 LINE L2 3112 3240 -32 195 333 58 0 chr6 24164468 24164555 -165114999 + MIR SINE MIR 40 131 -77 513 286 12 12 chr6 24165251 24165412 -165114142 - MIR SINE MIR 0 262 102 27 81 0 0 chr6 24165481 24165543 -165114011 + AT_rich Low_complexity Low_complexity 1 62 0 325 248 114 9 chr6 24167733 24167838 -165111716 + MIR3 SINE MIR 86 201 -7 265 323 46 39 chr6 24168525 24168655 -165110899 + L2 LINE L2 3136 3266 -6 2273 66 0 21 chr6 24169025 24169343 -165110211 - AluY SINE Alu 0 312 1 1306 158 4 0 chr6 24169443 24169671 -165109883 - L1PA14 LINE L1 0 6161 5933 414 308 55 66 chr6 24171132 24171512 -165108042 + HAL1b LINE L1 52 427 -921 313 340 52 7 chr6 24171513 24171666 -165107888 + HAL1b LINE L1 451 610 -738 258 71 18 36 chr6 24171998 24172054 -165107500 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 22 35 0 0 chr6 24172485 24172514 -165107040 + AT_rich Low_complexity Low_complexity 1 29 0 225 224 31 31 chr6 24172633 24172731 -165106823 + L1MDa LINE L1 1299 1396 -5144 474 283 83 40 chr6 24172949 24173274 -165106280 + HAL1 LINE L1 1329 1667 -840 978 184 41 30 chr6 24173337 24173604 -165105950 - L1MA9 LINE L1 -771 5375 5106 * 3525 184 34 35 chr6 24173600 24174361 -165105193 + L1MA9 LINE L1 5347 6106 -206 21 36 0 0 chr6 24174481 24174509 -165105045 + AT_rich Low_complexity Low_complexity 1 28 0 811 231 121 5 chr6 24174513 24174712 -165104842 + MER58A DNA MER1_type 3 224 0 252 265 46 97 chr6 24174764 24174960 -165104594 + L1ME4a LINE L1 5922 6107 -14 2667 174 6 33 chr6 24176720 24177201 -165102353 + LOR1a LTR ERV1 1 469 -28 1484 77 87 0 chr6 24177201 24177409 -165102145 + MER30 DNA MER1_type 5 230 0 2667 174 6 33 chr6 24177409 24177438 -165102116 + LOR1a LTR ERV1 469 497 0 180 394 106 22 chr6 24177620 24177800 -165101754 + L2 LINE L2 3077 3271 -1 236 254 34 0 chr6 24178528 24178587 -165100967 - MIR SINE MIR -62 146 86 187 227 23 0 chr6 24180122 24180166 -165099388 + L2 LINE L2 2846 2890 -423 1545 143 91 7 chr6 24181016 24181302 -165098252 - L1MC1 LINE L1 -10 6323 6014 554 239 32 13 chr6 24181740 24181895 -165097659 - MER103 DNA DNA -2 164 7 1703 90 0 8 chr6 24181989 24182223 -165097331 + AluY SINE Alu 74 305 -6 23 54 0 0 chr6 24182346 24182383 -165097171 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 24182655 24182678 -165096876 + AT_rich Low_complexity Low_complexity 1 23 0 236 342 95 40 chr6 24182752 24182843 -165096711 + MIR SINE MIR 1 86 -176 1628 113 4 21 chr6 24182843 24183081 -165096473 - AluSq SINE Alu -79 234 1 236 342 95 40 chr6 24183081 24183211 -165096343 + MIR SINE MIR 86 234 -28 2269 147 76 27 chr6 24183962 24184371 -165095183 + Tigger2a DNA MER2_type 6 434 0 384 296 53 40 chr6 24184684 24184836 -165094718 - MER5B DNA MER1_type -24 154 1 569 175 21 0 chr6 24185300 24185397 -165094157 + MER81 DNA DNA 15 113 -1 2186 118 3 10 chr6 24186093 24186407 -165093147 - AluSx SINE Alu 0 312 1 2096 121 40 32 chr6 24188025 24188397 -165091157 - THE1C LTR MaLR 0 375 1 2185 101 7 7 chr6 24188806 24189104 -165090450 - AluSx SINE Alu -1 311 14 22 35 0 0 chr6 24191474 24191503 -165088051 + AT_rich Low_complexity Low_complexity 1 29 0 2110 84 3 21 chr6 24191505 24191789 -165087765 + AluY SINE Alu 21 299 -12 883 169 11 45 chr6 24191789 24191966 -165087588 + AluJb SINE Alu 134 304 -8 243 170 0 0 chr6 24192263 24192310 -165087244 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 490 101 13 13 chr6 24192392 24192471 -165087083 - MADE1 DNA Mariner 0 80 2 323 317 108 53 chr6 24192750 24193036 -165086518 + L1 LINE L1 3264 3584 -2562 1784 194 16 27 chr6 24193036 24193403 -165086151 - MLT1A1 LTR MaLR -2 363 1 323 317 108 53 chr6 24193403 24193551 -165086003 + L1 LINE L1 3584 3722 -2424 418 360 11 16 chr6 24193729 24193915 -165085639 + MER5A DNA MER1_type 4 188 -1 221 250 0 33 chr6 24194229 24194289 -165085265 - L2 LINE L2 0 3272 3215 260 294 31 60 chr6 24196071 24196267 -165083287 + MER20B DNA MER1_type 3 199 -20 198 0 0 0 chr6 24196318 24196340 -165083214 + (A)n Simple_repeat Simple_repeat 1 22 0 239 235 20 0 chr6 24196401 24196452 -165083102 + MLT1H1 LTR MaLR 1 52 -503 336 199 193 64 chr6 24196644 24196815 -165082739 + MLT1H1 LTR MaLR 327 519 -36 1206 160 5 0 chr6 24197060 24197254 -165082300 + MSTB LTR MaLR 1 195 -231 881 86 0 0 chr6 24197267 24197383 -165082171 + AluSg/x SINE Alu 177 292 -20 22 35 0 0 chr6 24197383 24197412 -165082142 + AT_rich Low_complexity Low_complexity 1 29 0 1206 169 42 17 chr6 24197416 24197653 -165081901 + MSTB LTR MaLR 184 426 0 22 0 0 0 chr6 24197694 24197716 -165081838 + AT_rich Low_complexity Low_complexity 1 22 0 300 271 98 57 chr6 24197737 24197859 -165081695 + L2 LINE L2 3180 3306 -7 2282 103 3 6 chr6 24197949 24198261 -165081293 + AluSp SINE Alu 1 311 -2 195 297 230 0 chr6 24198333 24198407 -165081147 - MIR3 SINE MIR -46 162 72 225 0 0 0 chr6 24198529 24198554 -165081000 + (A)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chr6 24198554 24198588 -165080966 + (TA)n Simple_repeat Simple_repeat 2 35 0 275 0 29 0 chr6 24199339 24199374 -165080180 + (TTTTA)n Simple_repeat Simple_repeat 3 38 0 773 62 0 0 chr6 24199377 24199474 -165080080 - L1PA10 LINE L1 -32 6136 6040 322 252 139 0 chr6 24199568 24199683 -165079871 - MIR SINE MIR -6 256 126 25496 129 14 12 chr6 24199683 24206053 -165073501 + L1PA8A LINE L1 1 6441 -5 200 360 0 27 chr6 24206064 24206139 -165073415 - MIR SINE MIR -71 137 65 285 367 47 12 chr6 24206181 24206350 -165073204 - MIR SINE MIR -78 184 10 370 300 58 31 chr6 24206729 24206952 -165072602 - MLT1J2 LTR MaLR -221 229 1 184 314 21 64 chr6 24207275 24207415 -165072139 - L2 LINE L2 -1 3312 3179 22 0 0 0 chr6 24208856 24208878 -165070676 + AT_rich Low_complexity Low_complexity 1 22 0 462 167 49 0 chr6 24208878 24208980 -165070574 - L1MA8 LINE L1 -1 6290 6184 43 0 0 0 chr6 24209004 24209047 -165070507 + AT_rich Low_complexity Low_complexity 1 43 0 2058 114 8 40 chr6 24209047 24209424 -165070130 - L1MA8 LINE L1 -110 6181 5817 448 261 118 26 chr6 24209570 24209765 -165069789 - MIR SINE MIR -35 227 15 228 287 23 23 chr6 24209946 24210033 -165069521 + GA-rich Low_complexity Low_complexity 2 88 0 499 123 0 37 chr6 24210055 24210157 -165069397 - L1P5 LINE L1 -355 5801 5707 237 65 0 0 chr6 24210720 24210751 -165068803 + (TTG)n Simple_repeat Simple_repeat 2 32 0 3029 125 28 10 chr6 24210751 24211256 -165068298 - LTR9B LTR ERV1 -89 555 42 15642 92 21 10 chr6 24211257 24211586 -165067968 - HUERS-P3b LTR ERV1 -1 7417 7093 11114 83 5 0 chr6 24211586 24213903 -165065651 + L1PA7 LINE L1 3828 6152 -2 15642 92 21 10 chr6 24213903 24216168 -165063386 - HUERS-P3b LTR ERV1 -325 7093 4719 11969 102 143 135 chr6 24216167 24219198 -165060356 - HUERS-P3b LTR ERV1 -3544 3874 747 * 764 121 79 7 chr6 24219206 24219346 -165060208 - HUERS-P3b LTR ERV1 -6859 559 410 381 175 52 62 chr6 24219350 24219447 -165060107 - HUERS-P3b LTR ERV1 -7322 96 1 1255 129 0 5 chr6 24219447 24219648 -165059906 - LTR9B LTR ERV1 0 644 445 2083 137 3 0 chr6 24220042 24220335 -165059219 - AluSq SINE Alu -17 296 3 298 317 48 35 chr6 24220371 24220516 -165059038 - L2 LINE L2 -185 3087 2941 182 393 34 0 chr6 24220607 24220696 -165058858 - L2 LINE L2 -508 2806 2715 232 374 96 0 chr6 24220883 24221070 -165058484 - L2 LINE L2 -824 2490 2286 403 160 9 66 chr6 24221356 24221462 -165058092 + MER58 DNA MER1_type 2306 2405 -15 1436 179 164 3 chr6 24223991 24224332 -165055222 + MSTD LTR MaLR 1 396 0 2038 85 19 11 chr6 24224940 24225211 -165054343 + AluSg1 SINE Alu 21 293 -16 336 48 0 0 chr6 24225231 24225273 -165054281 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr6 24227880 24227901 -165051653 + AT_rich Low_complexity Low_complexity 1 21 0 459 262 48 83 chr6 24228188 24228501 -165051053 + MLT1H LTR MaLR 219 520 -29 330 273 87 81 chr6 24228693 24229027 -165050527 - L1ME3A LINE L1 -284 5886 5551 391 318 45 25 chr6 24229036 24229237 -165050317 - MLT1J1 LTR MaLR -180 266 62 546 265 6 41 chr6 24229361 24229531 -165050023 - MIR SINE MIR -70 192 29 386 354 94 9 chr6 24229693 24230012 -165049542 + L2 LINE L2 1786 2131 -1183 27 0 0 0 chr6 24230066 24230093 -165049461 + AT_rich Low_complexity Low_complexity 1 27 0 480 250 47 20 chr6 24230423 24230571 -165048983 + L2 LINE L2 2931 3082 -190 273 306 326 20 chr6 24230895 24231091 -165048463 - L3 LINE CR1 -727 850 595 290 276 98 32 chr6 24231492 24231615 -165047939 - MIR SINE MIR -34 228 98 221 333 50 10 chr6 24232335 24232434 -165047120 - MIR SINE MIR -122 140 38 346 321 80 31 chr6 24232764 24232988 -165046566 + MIR SINE MIR 28 262 0 7293 111 95 96 chr6 24233110 24234807 -165044747 + pTR5 LTR ERV1 743 2438 0 1780 179 48 59 chr6 24235017 24235343 -165044211 - MLT2C2 LTR ERVL -11 453 132 1691 179 0 60 chr6 24235343 24235662 -165043892 - AluJb SINE Alu -12 300 1 1780 179 48 59 chr6 24235662 24235793 -165043761 - MLT2C2 LTR ERVL -332 132 1 2019 250 44 18 chr6 24236353 24236909 -165042645 - MER77 LTR ERV1 -4 601 54 520 290 94 27 chr6 24237020 24237244 -165042310 - MIR SINE MIR -10 252 14 1099 267 99 28 chr6 24237296 24237760 -165041794 - Charlie2 DNA MER1_type -2251 531 35 210 37 0 0 chr6 24238247 24238274 -165041280 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1900 111 15 0 chr6 24238275 24238536 -165041018 - AluSx SINE Alu -47 265 1 23 0 0 0 chr6 24238876 24238899 -165040655 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 24239676 24239698 -165039856 + AT_rich Low_complexity Low_complexity 1 22 0 2396 101 0 0 chr6 24241096 24241404 -165038150 - AluSq SINE Alu -5 308 1 250 282 0 13 chr6 24242635 24242713 -165036841 + CT-rich Low_complexity Low_complexity 1 77 0 318 276 0 32 chr6 24243589 24243712 -165035842 + MER115 DNA AcHobo 111 229 -464 274 310 129 23 chr6 24243909 24244080 -165035474 + L2 LINE L2 2897 3085 -187 389 248 302 0 chr6 24244857 24245006 -165034548 - MIR SINE MIR -30 232 39 361 248 283 0 chr6 24245623 24245768 -165033786 + MER5A DNA MER1_type 4 189 0 4353 193 72 1 chr6 24246294 24247301 -165032253 + Tigger6a DNA MER2_type 2 1079 -4 504 96 21 11 chr6 24247303 24247387 -165032167 + (TAGA)n Simple_repeat Simple_repeat 1 88 -7 3643 102 0 2 chr6 24247387 24247905 -165031649 + L1PA13 LINE L1 5640 6156 -7 504 96 21 11 chr6 24247905 24247914 -165031640 + (TAGA)n Simple_repeat Simple_repeat 88 95 0 27 73 0 0 chr6 24248381 24248436 -165031118 + AT_rich Low_complexity Low_complexity 1 55 0 300 264 182 0 chr6 24248889 24248999 -165030555 + MLT1J2 LTR MaLR 200 329 -121 476 173 233 40 chr6 24249152 24249302 -165030252 + MER3 DNA MER1_type 6 184 -25 1384 118 45 9 chr6 24249625 24249845 -165029709 + MER30 DNA MER1_type 1 228 -2 2251 71 0 0 chr6 24250452 24250788 -165028766 - AluY SINE Alu 0 336 1 1534 234 0 7 chr6 24253116 24253420 -165026134 + AluJo SINE Alu 2 303 -9 2070 113 20 13 chr6 24253773 24254073 -165025481 - AluSx SINE Alu -10 302 1 248 336 86 31 chr6 24254466 24254594 -165024960 + MIR3 SINE MIR 12 146 -62 296 255 10 20 chr6 24254841 24254943 -165024611 + MER103 DNA DNA 12 112 -54 23 0 0 0 chr6 24255216 24255239 -165024315 + AT_rich Low_complexity Low_complexity 1 23 0 2103 126 34 0 chr6 24258213 24258506 -165021048 + AluSx SINE Alu 1 303 -9 1352 134 40 27 chr6 24258634 24258858 -165020696 + AluJb SINE Alu 86 312 0 254 344 21 11 chr6 24259109 24259202 -165020352 + MIR SINE MIR 38 131 -131 2052 99 16 43 chr6 24259211 24259344 -165020210 + AluSg SINE Alu 2 137 -173 2300 81 0 3 chr6 24259344 24259640 -165019914 + AluY SINE Alu 1 295 -16 2052 99 16 43 chr6 24259640 24259809 -165019745 + AluSg SINE Alu 137 296 -14 413 354 74 41 chr6 24259811 24260597 -165018957 - L2 LINE L2 -1 3271 2463 2078 105 25 4 chr6 24260634 24260943 -165018611 + AluSx SINE Alu 1 315 0 213 108 0 0 chr6 24262398 24262435 -165017119 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1991 116 4 0 chr6 24262439 24262714 -165016840 - AluSg SINE Alu -34 276 1 509 274 14 56 chr6 24262895 24263110 -165016444 + LTR33 LTR ERVL 7 212 -309 235 222 30 121 chr6 24263329 24263428 -165016126 - MIR SINE MIR -66 142 53 458 275 48 53 chr6 24263438 24263645 -165015909 - MLT1K LTR MaLR -22 566 361 1560 204 106 10 chr6 24264716 24265133 -165014421 + MER101 LTR ERV1 6 462 -12 22 0 0 0 chr6 24265288 24265310 -165014244 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 24266654 24266677 -165012877 + AT_rich Low_complexity Low_complexity 1 23 0 181 355 51 29 chr6 24269013 24269151 -165010403 + L3b LINE CR1 1356 1496 -87 180 0 0 0 chr6 24269234 24269254 -165010300 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 213 196 0 0 chr6 24269697 24269748 -165009806 + (TATG)n Simple_repeat Simple_repeat 2 52 0 188 67 33 0 chr6 24270291 24270321 -165009233 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1261 191 89 18 chr6 24270454 24270613 -165008941 - AluJo SINE Alu -10 302 156 234 0 0 0 chr6 24270613 24270639 -165008915 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1261 191 89 18 chr6 24270639 24270761 -165008793 - AluJo SINE Alu -156 156 1 3686 163 319 64 chr6 24271122 24272475 -165007079 + pTR5 LTR ERV1 741 2438 0 2266 107 3 0 chr6 24273472 24273770 -165005784 + AluSx SINE Alu 1 299 -13 1689 165 65 108 chr6 24274640 24275083 -165004471 + MSTA LTR MaLR 1 424 -4 9096 160 8 18 chr6 24275085 24275322 -165004232 + MSTA-int LTR MaLR 1 239 -1132 2328 94 0 22 chr6 24275322 24275640 -165003914 + AluY SINE Alu 1 311 0 9096 160 8 18 chr6 24275640 24277068 -165002486 + MSTA-int LTR MaLR 239 1370 -1 1797 194 71 22 chr6 24277069 24277477 -165002077 + MSTA LTR MaLR 1 428 0 2189 136 14 27 chr6 24277547 24277916 -165001638 + THE1B LTR MaLR 1 364 0 360 184 11 49 chr6 24278092 24278277 -165001277 + GA-rich Low_complexity Low_complexity 2 179 0 1354 284 99 42 chr6 24278330 24278638 -165000916 + L1ME LINE L1 97 386 -5875 324 0 0 0 chr6 24278638 24278674 -165000880 + (TG)n Simple_repeat Simple_repeat 2 37 0 1354 284 99 42 chr6 24278674 24279643 -164999911 + L1ME LINE L1 386 1299 -4962 2380 63 11 0 chr6 24279643 24279928 -164999626 + AluY SINE Alu 1 288 -23 1354 284 99 42 chr6 24279928 24280172 -164999382 + L1ME LINE L1 1299 1528 -4733 474 18 0 0 chr6 24280172 24280227 -164999327 + (TA)n Simple_repeat Simple_repeat 2 56 0 1354 284 99 42 chr6 24280227 24280386 -164999168 + L1ME LINE L1 1528 1942 -4319 277 259 0 116 chr6 24281459 24281571 -164997983 + MER58 DNA MER1_type 1 99 -2321 472 192 0 19 chr6 24281585 24281689 -164997865 + MER58 DNA MER1_type 2319 2420 0 2234 71 3 0 chr6 24281777 24282059 -164997495 + AluY SINE Alu 25 307 -4 2050 125 7 3 chr6 24282168 24282464 -164997090 + AluSg SINE Alu 1 297 -13 718 286 160 3 chr6 24282541 24282866 -164996688 + MLT1G1 LTR MaLR 6 381 -214 244 164 0 49 chr6 24282926 24282987 -164996567 + MLT1G1 LTR MaLR 474 531 -24 21 0 0 0 chr6 24283727 24283748 -164995806 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr6 24284048 24284084 -164995470 + AT_rich Low_complexity Low_complexity 1 36 0 225 341 87 35 chr6 24286199 24286428 -164993126 - L2 LINE L2 -905 2409 2169 932 222 15 0 chr6 24286865 24287063 -164992491 - MER20 DNA MER1_type -3 216 16 242 196 0 0 chr6 24287098 24287144 -164992410 + MER39 LTR ERV1 1 46 -661 1393 190 97 33 chr6 24287175 24287596 -164991958 + MER39 LTR ERV1 260 707 0 28 0 0 0 chr6 24288755 24288783 -164990771 + AT_rich Low_complexity Low_complexity 1 28 0 823 195 71 122 chr6 24289452 24289847 -164989707 - MER57A LTR ERV1 0 403 29 2288 98 0 0 chr6 24290224 24290521 -164989033 - AluSg SINE Alu -13 297 1 396 175 0 12 chr6 24292206 24292286 -164987268 - MADE1 DNA Mariner 0 80 2 300 255 78 20 chr6 24292301 24292403 -164987151 + MIR SINE MIR 100 207 -55 1012 187 22 49 chr6 24293289 24293514 -164986040 + MER20 DNA MER1_type 1 219 0 350 326 16 43 chr6 24294725 24294909 -164984645 + MIR SINE MIR 53 231 -31 30 59 0 0 chr6 24295878 24295929 -164983625 + AT_rich Low_complexity Low_complexity 1 51 0 384 77 0 0 chr6 24296253 24296305 -164983249 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1199 94 0 6 chr6 24296317 24296498 -164983056 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 228 182 0 0 chr6 24298394 24298438 -164981116 + GA-rich Low_complexity Low_complexity 2 45 0 612 195 0 8 chr6 24298468 24298591 -164980963 + MER46A DNA MER2_type 25 146 -90 609 291 94 10 chr6 24298594 24298797 -164980757 - MIR SINE MIR -41 221 2 609 170 0 0 chr6 24301108 24301220 -164978334 + (CA)n Simple_repeat Simple_repeat 2 113 0 1766 162 10 3 chr6 24301535 24301825 -164977729 - AluSx SINE Alu -20 292 1 211 290 0 29 chr6 24304343 24304412 -164975142 + GA-rich Low_complexity Low_complexity 3 69 0 2240 109 0 7 chr6 24305738 24306042 -164973512 - AluSx SINE Alu -10 302 1 2322 88 3 0 chr6 24306627 24306922 -164972632 + AluSp SINE Alu 1 296 -17 477 243 37 70 chr6 24308171 24308385 -164971169 - L2 LINE L2 -6 3307 3101 30 0 0 0 chr6 24308789 24308819 -164970735 + AT_rich Low_complexity Low_complexity 1 30 0 838 281 129 13 chr6 24309559 24309876 -164969678 + L1MDb LINE L1 7 360 -6049 228 277 80 9 chr6 24309880 24309992 -164969562 + L1MDb LINE L1 416 535 -5874 4192 219 78 30 chr6 24310099 24310799 -164968755 + L1MDb LINE L1 402 1067 -5339 2857 103 41 9 chr6 24310799 24311236 -164968318 + L1PA10 LINE L1 5718 6168 0 4192 219 78 30 chr6 24311236 24313143 -164966411 + L1MDb LINE L1 1067 3143 -3263 1163 85 0 20 chr6 24313143 24313296 -164966258 + AluSx SINE Alu 11 160 -152 525 264 58 16 chr6 24313330 24313588 -164965966 + L1MDb LINE L1 3140 3408 -2998 * 5633 148 30 39 chr6 24313555 24313643 -164965911 + L1PA16 LINE L1 4922 5009 -1417 1802 132 87 13 chr6 24313643 24313953 -164965601 - MER1B DNA MER1_type -4 333 1 5633 148 30 39 chr6 24313953 24315394 -164964160 + L1PA16 LINE L1 5009 6426 0 1773 262 24 25 chr6 24315375 24315838 -164963716 + L1MDb LINE L1 3366 3829 -2577 * 1946 146 7 10 chr6 24315838 24316146 -164963408 - AluSx SINE Alu -5 307 1 1773 262 24 25 chr6 24316146 24316351 -164963203 + L1MDb LINE L1 3829 4033 -2373 2339 89 3 0 chr6 24316582 24316884 -164962670 - AluSx SINE Alu -9 303 1 224 245 0 29 chr6 24316978 24317080 -164962474 + (TA)n Simple_repeat Simple_repeat 1 99 0 22 35 0 0 chr6 24317080 24317109 -164962445 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 24319357 24319394 -164960160 + AT_rich Low_complexity Low_complexity 1 37 0 243 374 145 9 chr6 24319866 24320184 -164959370 - L2 LINE L2 -1032 2282 1922 5409 27 0 0 chr6 24320316 24320944 -164958610 + L1PA3 LINE L1 5525 6152 -3 2065 141 3 0 chr6 24321186 24321483 -164958071 + AluSx SINE Alu 1 298 -14 21 89 0 0 chr6 24321621 24321677 -164957877 + AT_rich Low_complexity Low_complexity 1 56 0 207 213 0 21 chr6 24322535 24322582 -164956972 + A-rich Low_complexity Low_complexity 4 49 0 246 315 134 0 chr6 24323101 24323228 -164956326 + L3b LINE CR1 1242 1385 -198 689 233 66 60 chr6 24323295 24323449 -164956105 - MER69 DNA AcHobo -168 2358 2206 1937 135 3 14 chr6 24323449 24323745 -164955809 + AluJb SINE Alu 1 293 -19 689 233 66 60 chr6 24323745 24323937 -164955617 - MER69 DNA AcHobo -320 2206 2010 * 783 279 85 31 chr6 24323935 24324229 -164955325 - MER69 DNA AcHobo -658 568 259 668 159 65 7 chr6 24324251 24324389 -164955165 + L1MA10 LINE L1 6174 6319 -15 291 295 83 25 chr6 24324405 24324659 -164954895 - LTR41 LTR ERVL 0 795 506 1357 238 40 62 chr6 24324994 24325590 -164953964 + L1MDb LINE L1 4345 4927 -1479 954 247 67 43 chr6 24325783 24326159 -164953395 + L1MDb LINE L1 4857 5241 -1165 590 202 39 39 chr6 24326147 24326325 -164953229 + L1MA10 LINE L1 6155 6332 -2 * 398 254 52 104 chr6 24326754 24326927 -164952627 - MIR3 SINE MIR -4 204 41 21 0 0 0 chr6 24327411 24327432 -164952122 + AT_rich Low_complexity Low_complexity 1 21 0 668 254 90 59 chr6 24327432 24327909 -164951645 - L1ME4a LINE L1 0 6121 5630 335 237 138 26 chr6 24328871 24329034 -164950520 + MIR SINE MIR 3 198 -62 22 0 0 0 chr6 24329133 24329155 -164950399 + AT_rich Low_complexity Low_complexity 1 22 0 2211 100 0 7 chr6 24329322 24329621 -164949933 - AluSq SINE Alu -16 297 1 397 244 211 8 chr6 24329737 24329860 -164949694 - MER5A DNA MER1_type -27 162 15 1147 126 43 91 chr6 24329872 24330102 -164949452 + MER20 DNA MER1_type 1 219 0 189 140 35 53 chr6 24334229 24334286 -164945268 - MER5C DNA MER1_type -106 218 163 329 270 40 30 chr6 24334486 24334586 -164944968 - L2 LINE L2 0 3272 3172 194 349 0 0 chr6 24334778 24334844 -164944710 + MIR SINE MIR 82 147 -115 309 300 56 32 chr6 24334860 24335202 -164944352 + L2 LINE L2 1272 1709 -1605 593 216 0 0 chr6 24335262 24335387 -164944167 - MER3 DNA MER1_type 0 209 85 31 26 0 0 chr6 24336550 24336588 -164942966 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 71 chr6 24336827 24336869 -164942685 + AT_rich Low_complexity Low_complexity 1 39 0 3300 150 42 85 chr6 24336869 24337099 -164942455 + L1MB3 LINE L1 5445 5683 -500 1767 53 80 0 chr6 24337099 24337324 -164942230 + AluY SINE Alu 41 283 -28 3300 150 42 85 chr6 24337324 24337858 -164941696 + L1MB3 LINE L1 5683 6176 -7 294 247 21 10 chr6 24337858 24337955 -164941599 + (TA)n Simple_repeat Simple_repeat 1 98 0 580 301 55 47 chr6 24337963 24338199 -164941355 - MIR SINE MIR -20 242 5 5923 147 9 53 chr6 24338421 24340262 -164939292 - L1PB1 LINE L1 -1 6150 4396 2744 90 3 8 chr6 24440545 24440932 -164838622 + L1PA13 LINE L1 5777 6161 -2 1294 212 60 92 chr6 24441029 24441070 -164838484 - LTR54B LTR ERV1 -3 495 454 1493 88 5 0 chr6 24441070 24441285 -164838269 - L1PA7 LINE L1 -6 6148 5933 1294 212 60 92 chr6 24441285 24441329 -164838225 - LTR54B LTR ERV1 -44 454 410 2575 43 0 0 chr6 24441329 24441630 -164837924 + AluY SINE Alu 1 301 -10 1294 212 60 92 chr6 24441630 24442044 -164837510 - LTR54B LTR ERV1 -88 410 11 848 191 29 34 chr6 24442614 24442823 -164836731 + MER3 DNA MER1_type 1 208 -1 204 327 0 89 chr6 24442976 24443008 -164836546 + L2 LINE L2 3146 3179 -93 2448 50 0 0 chr6 24443008 24443311 -164836243 + L1PA8 LINE L1 5870 6172 0 204 327 0 89 chr6 24443311 24443379 -164836175 + L2 LINE L2 3179 3237 -35 226 224 13 105 chr6 24443419 24443495 -164836059 - MIR3 SINE MIR -1 207 139 676 283 97 72 chr6 24443561 24444003 -164835551 + MLT1L LTR MaLR 110 562 -53 1261 271 162 9 chr6 24444032 24444463 -164835091 - MLT1E LTR MaLR -96 497 1 181 344 67 0 chr6 24444463 24444553 -164835001 - MIR SINE MIR -58 150 55 340 353 27 0 chr6 24444587 24444774 -164834780 + MIR SINE MIR 70 261 -1 419 211 9 44 chr6 24445649 24445763 -164833791 - MIR SINE MIR 0 262 153 23 54 0 0 chr6 24446087 24446124 -164833430 + AT_rich Low_complexity Low_complexity 1 37 0 2035 143 0 7 chr6 24446308 24446609 -164832945 - AluSx SINE Alu -13 299 1 10320 201 49 54 chr6 24447831 24453392 -164826162 + L1MC1 LINE L1 46 5576 -1037 1283 212 24 28 chr6 24453392 24453680 -164825874 + AluJo SINE Alu 3 289 -23 10320 201 49 54 chr6 24453680 24454708 -164824846 + L1MC1 LINE L1 5576 6607 -6 217 147 80 0 chr6 24455419 24455494 -164824060 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 57 0 0 chr6 24455886 24455921 -164823633 + AT_rich Low_complexity Low_complexity 1 35 0 215 351 88 18 chr6 24456948 24457062 -164822492 - L2 LINE L2 -33 3239 3118 815 333 102 34 chr6 24458751 24459283 -164820271 - L2 LINE L2 -448 2866 2299 254 217 42 25 chr6 24459737 24459857 -164819697 + (TA)n Simple_repeat Simple_repeat 2 123 0 1891 179 14 19 chr6 24460338 24460701 -164818853 + MLT1A1 LTR MaLR 5 365 0 280 331 112 6 chr6 24461878 24462047 -164817507 - MIR SINE MIR -56 206 20 207 188 0 0 chr6 24462446 24462494 -164817060 + (TG)n Simple_repeat Simple_repeat 2 49 0 247 261 144 0 chr6 24462888 24462999 -164816555 - L1MC/D LINE L1 -1923 5885 5759 2080 124 0 0 chr6 24463101 24463392 -164816162 + AluSc SINE Alu 1 291 -18 363 44 0 0 chr6 24463392 24463437 -164816117 + (TA)n Simple_repeat Simple_repeat 2 46 0 236 290 36 43 chr6 24463671 24463809 -164815745 - L1MC/D LINE L1 -673 5448 5312 2414 87 0 0 chr6 24463943 24464254 -164815300 + AluY SINE Alu 1 311 0 350 291 26 93 chr6 24464570 24464721 -164814833 - MIR3 SINE MIR -9 199 59 27 0 0 0 chr6 24466045 24466072 -164813482 + AT_rich Low_complexity Low_complexity 1 27 0 253 0 0 51 chr6 24467580 24467619 -164811935 + (CATA)n Simple_repeat Simple_repeat 4 40 0 756 306 101 8 chr6 24469588 24469836 -164809718 - HERV16 LTR ERVL -1901 3095 2825 667 246 7 7 chr6 24470185 24470323 -164809231 - L2 LINE L2 0 3313 3176 272 27 27 0 chr6 24470328 24470365 -164809189 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 1302 310 44 45 chr6 24470393 24470979 -164808575 - L2 LINE L2 -310 3003 2421 2049 267 116 45 chr6 24470989 24471885 -164807669 - L2 LINE L2 -2328 986 27 195 259 19 0 chr6 24472607 24472661 -164806893 + L2 LINE L2 3256 3310 -3 236 273 0 15 chr6 24472726 24472792 -164806762 - L2 LINE L2 -1 3312 3248 1053 200 192 90 chr6 24472987 24473150 -164806404 - MLT1D LTR MaLR 0 505 360 1955 115 7 4 chr6 24473150 24473420 -164806134 + AluSc SINE Alu 24 294 -15 1053 200 192 90 chr6 24473420 24473710 -164805844 - MLT1D LTR MaLR -145 360 6 259 133 17 17 chr6 24476679 24476739 -164802815 + (TA)n Simple_repeat Simple_repeat 1 60 0 395 293 61 7 chr6 24477160 24477307 -164802247 + MIR SINE MIR 100 254 -8 21 0 0 0 chr6 24478078 24478099 -164801455 + AT_rich Low_complexity Low_complexity 1 21 0 2347 84 3 0 chr6 24479074 24479373 -164800181 - AluSx SINE Alu -12 300 1 183 333 10 21 chr6 24479452 24479548 -164800006 + L2 LINE L2 2288 2382 -932 189 342 45 58 chr6 24479691 24479846 -164799708 + L2 LINE L2 2568 2720 -594 187 337 68 44 chr6 24480011 24480216 -164799338 + L2 LINE L2 2933 3142 -130 492 270 16 0 chr6 24480588 24480714 -164798840 - MER94 DNA DNA -3 131 4 280 249 3 31 chr6 24483224 24483346 -164796208 + L1ME3 LINE L1 5271 5389 -781 428 329 124 9 chr6 24483350 24483672 -164795882 + L1ME3 LINE L1 5561 5919 -243 1131 157 0 0 chr6 24483772 24483950 -164795604 - AluSg/x SINE Alu -2 310 133 1979 91 76 0 chr6 24484760 24485036 -164794518 - AluSq SINE Alu -16 297 1 358 247 54 11 chr6 24485773 24485866 -164793688 - L2 LINE L2 -16 3297 3201 202 375 109 11 chr6 24486021 24486288 -164793266 - L2 LINE L2 -1862 1452 1160 370 351 18 0 chr6 24487322 24487433 -164792121 + MIR3 SINE MIR 72 184 -24 417 188 9 18 chr6 24488605 24488717 -164790837 + GA-rich Low_complexity Low_complexity 1 111 0 2255 102 0 0 chr6 24489854 24490149 -164789405 + AluSc SINE Alu 1 295 -14 377 336 102 8 chr6 24490449 24490693 -164788861 + MLT1J LTR MaLR 52 318 -193 8196 64 13 3 chr6 24491625 24492685 -164786869 + MER11C LTR ERVK 1 1071 0 291 172 52 17 chr6 24492711 24492769 -164786785 - LTR40a LTR ERVL -1 518 459 317 141 14 0 chr6 24492774 24492845 -164786709 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 286 191 75 21 chr6 24492868 24492962 -164786592 - LTR40b LTR ERVL -98 364 266 244 219 0 85 chr6 24493255 24493337 -164786217 - LTR40a LTR ERVL -444 75 1 437 341 29 29 chr6 24493374 24493547 -164786007 - MIR SINE MIR -77 185 13 208 289 117 16 chr6 24493622 24493750 -164785804 + L2 LINE L2 3172 3312 -1 22 35 0 0 chr6 24497240 24497269 -164782285 + AT_rich Low_complexity Low_complexity 1 29 0 686 204 14 0 chr6 24497459 24497606 -164781948 - L1MB1 LINE L1 -3 6165 6017 336 24 0 0 chr6 24497787 24497828 -164781726 + (CA)n Simple_repeat Simple_repeat 2 42 0 25 0 0 0 chr6 24498577 24498602 -164780952 + AT_rich Low_complexity Low_complexity 1 25 0 663 279 10 32 chr6 24499640 24499865 -164779689 - MIR SINE MIR 0 262 47 330 176 44 11 chr6 24500861 24500952 -164778602 - L1MEc LINE L1 -4082 2314 2221 * 2302 251 156 10 chr6 24500948 24501919 -164777635 + L1M4 LINE L1 3707 4818 -1328 312 255 0 21 chr6 24502013 24502107 -164777447 + L1MC4 LINE L1 6612 6703 -1339 339 243 43 0 chr6 24502136 24502206 -164777348 - Tigger3(Golem) DNA MER2_type -1 3028 2956 2481 57 0 0 chr6 24502394 24502690 -164776864 - AluY SINE Alu -15 296 1 894 180 22 61 chr6 24502780 24503008 -164776546 + MER20 DNA MER1_type 1 219 0 2121 185 4 65 chr6 24503115 24503574 -164775980 + MSTB1 LTR MaLR 1 431 -1 23 0 0 0 chr6 24503807 24503830 -164775724 + AT_rich Low_complexity Low_complexity 1 23 0 2435 77 3 0 chr6 24505622 24505922 -164773632 + AluSx SINE Alu 1 301 -11 753 251 158 35 chr6 24506565 24506964 -164772590 + MLT1J2 LTR MaLR 1 448 -2 258 154 0 0 chr6 24507205 24507291 -164772263 - AluSc SINE Alu 0 332 247 1188 148 0 0 chr6 24507291 24507467 -164772087 - AluSx SINE Alu -136 176 1 384 268 0 0 chr6 24507735 24507817 -164771737 - L2 LINE L2 -6 3307 3226 22 0 0 0 chr6 24508851 24508873 -164770681 + AT_rich Low_complexity Low_complexity 1 22 0 995 152 7 0 chr6 24510179 24510346 -164769208 + FRAM SINE Alu 1 168 0 673 330 122 16 chr6 24510410 24510780 -164768774 - LTR33 LTR ERVL -11 510 102 299 276 35 0 chr6 24511317 24511404 -164768150 - MIR SINE MIR -92 170 81 407 240 240 27 chr6 24511627 24511852 -164767702 + L2 LINE L2 3041 3313 0 1944 149 0 7 chr6 24513606 24513902 -164765652 - AluSx SINE Alu -17 295 2 2196 76 13 48 chr6 24514994 24515309 -164764245 + AluSc SINE Alu 1 304 -5 736 248 60 54 chr6 24515909 24516442 -164763112 + L1M4 LINE L1 2883 3418 -2728 23 33 0 0 chr6 24516479 24516509 -164763045 + AT_rich Low_complexity Low_complexity 1 30 0 328 152 38 0 chr6 24516699 24516778 -164762776 + L1M4 LINE L1 3886 3967 -2179 21 0 0 0 chr6 24516873 24516894 -164762660 + AT_rich Low_complexity Low_complexity 1 21 0 266 300 71 0 chr6 24516970 24517110 -164762444 + L1M4 LINE L1 4455 4604 -1542 * 317 190 10 50 chr6 24517103 24517203 -164762351 - L1ME1 LINE L1 -232 5934 5839 * 347 147 20 108 chr6 24517185 24517287 -164762267 - L1MEc LINE L1 -6269 127 35 22 0 0 0 chr6 24517358 24517380 -164762174 + AT_rich Low_complexity Low_complexity 1 22 0 248 325 52 26 chr6 24518109 24518186 -164761368 + L2 LINE L2 3112 3190 -82 1125 290 95 33 chr6 24520484 24521064 -164758490 + L2 LINE L2 2704 3313 0 196 286 52 39 chr6 24521137 24521214 -164758340 - MIR SINE MIR -8 254 177 538 206 10 0 chr6 24521219 24521316 -164758238 - MER2 DNA MER2_type -247 98 1 369 306 75 7 chr6 24521337 24521484 -164758070 - MIR SINE MIR -95 167 11 1386 180 3 73 chr6 24522187 24522487 -164757067 + AluJo SINE Alu 4 282 -30 7558 30 0 0 chr6 24522507 24523546 -164756008 - L1PA4 LINE L1 -8 6147 5109 2882 32 0 0 chr6 24523546 24523891 -164755663 + L1PA4 LINE L1 4753 5097 -1049 489 286 71 71 chr6 24524071 24524480 -164755074 + HAL1 LINE L1 43 451 -2056 202 230 324 0 chr6 24525571 24525645 -164753909 + L2 LINE L2 3197 3294 -19 1406 219 40 23 chr6 24527329 24527676 -164751878 + MLT1A1 LTR MaLR 1 353 -12 21 0 0 0 chr6 24527780 24527801 -164751753 + AT_rich Low_complexity Low_complexity 1 21 0 479 283 24 6 chr6 24528883 24529111 -164750443 + L1MDa LINE L1 1718 2047 -854 2140 129 3 0 chr6 24529136 24529438 -164750116 - AluSx SINE Alu -9 303 1 48 72 0 0 chr6 24529508 24529605 -164749949 + AT_rich Low_complexity Low_complexity 1 97 0 342 267 59 34 chr6 24530019 24530255 -164749299 + L1MDa LINE L1 2689 2930 -3610 23 54 0 0 chr6 24532383 24532420 -164747134 + AT_rich Low_complexity Low_complexity 1 37 0 30 27 0 0 chr6 24533788 24533825 -164745729 + AT_rich Low_complexity Low_complexity 1 37 0 258 167 0 0 chr6 24538210 24538270 -164741284 + (CGG)n Simple_repeat Simple_repeat 2 61 0 198 0 0 0 chr6 24538744 24538766 -164740788 + (CACCC)n Simple_repeat Simple_repeat 5 26 0 278 346 109 6 chr6 24540545 24540701 -164738853 - MIR SINE MIR -71 191 20 634 316 56 16 chr6 24540788 24541038 -164738516 - MIR SINE MIR -1 261 2 352 212 24 0 chr6 24541539 24541624 -164737930 + L1PB4 LINE L1 6069 6155 -1 193 305 128 48 chr6 24543775 24543962 -164735592 + L2 LINE L2 3112 3313 0 286 367 166 20 chr6 24544323 24544522 -164735032 + MIR SINE MIR 29 256 -6 486 0 0 0 chr6 24544648 24544702 -164734852 + (TA)n Simple_repeat Simple_repeat 2 55 0 273 300 64 0 chr6 24545800 24545910 -164733644 - L2 LINE L2 -62 3251 3135 598 297 36 56 chr6 24546187 24546436 -164733118 - L2 LINE L2 -19 3294 3051 210 37 0 0 chr6 24552595 24552622 -164726932 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 22 56 0 0 chr6 24552846 24552882 -164726672 + AT_rich Low_complexity Low_complexity 1 36 0 249 340 53 101 chr6 24554056 24554432 -164725122 - L2 LINE L2 -1 3271 2914 1964 251 89 50 chr6 24554609 24555553 -164724001 + Zaphod DNA AcHobo 9 989 -3042 872 264 45 14 chr6 24555663 24555951 -164723603 + Zaphod DNA AcHobo 3735 4031 0 443 253 12 124 chr6 24557637 24557886 -164721668 + MIR SINE MIR 42 262 0 2361 118 25 3 chr6 24559478 24559834 -164719720 - THE1B LTR MaLR 0 364 1 1424 220 67 9 chr6 24560855 24561291 -164718263 + Charlie4a DNA MER1_type 47 507 -1 403 269 70 41 chr6 24562068 24562203 -164717351 + MIR SINE MIR 14 156 -106 414 39 0 0 chr6 24562203 24562255 -164717299 + (CAT)n Simple_repeat Simple_repeat 3 54 0 403 269 70 41 chr6 24562255 24562290 -164717264 + MIR SINE MIR 156 189 -73 741 289 121 46 chr6 24562834 24563288 -164716266 + L2 LINE L2 2373 2860 -454 352 333 9 9 chr6 24563597 24563705 -164715849 + L2 LINE L2 3163 3270 -2 214 355 145 15 chr6 24563706 24563906 -164715648 + L2 LINE L2 2225 2450 -864 274 273 0 26 chr6 24564330 24564407 -164715147 - MER5A DNA MER1_type -83 106 32 462 320 87 7 chr6 24564435 24564585 -164714969 + L2 LINE L2 3103 3264 -8 237 65 0 0 chr6 24565047 24565078 -164714476 + (CA)n Simple_repeat Simple_repeat 2 32 0 186 263 0 0 chr6 24566255 24566312 -164713242 + GA-rich Low_complexity Low_complexity 4 60 0 25 31 0 0 chr6 24567399 24567431 -164712123 + AT_rich Low_complexity Low_complexity 1 32 0 340 177 127 0 chr6 24567864 24567943 -164711611 - LTR33 LTR ERVL -18 503 415 * 491 290 87 22 chr6 24567938 24568121 -164711433 - LTR33 LTR ERVL -212 309 115 291 28 0 0 chr6 24568197 24568233 -164711321 + (CA)n Simple_repeat Simple_repeat 1 36 0 1788 178 0 7 chr6 24568894 24569186 -164710368 + AluJo SINE Alu 1 290 -22 2488 129 3 0 chr6 24569489 24569852 -164709702 + THE1B LTR MaLR 1 364 0 603 315 103 28 chr6 24570141 24570659 -164708895 + L2 LINE L2 2686 3228 -85 258 32 0 0 chr6 24570701 24570732 -164708822 + (CA)n Simple_repeat Simple_repeat 1 31 0 1499 75 5 0 chr6 24570893 24571122 -164708432 + AluY SINE Alu 97 326 0 1841 146 22 41 chr6 24571763 24572078 -164707476 - AluJo SINE Alu -3 309 1 1169 246 97 68 chr6 24572079 24572655 -164706899 - L1ME3A LINE L1 -213 5957 5365 360 364 0 7 chr6 24572678 24572818 -164706736 - MER91B DNA MER1_type -28 162 24 357 43 0 0 chr6 24573229 24573276 -164706278 + (CA)n Simple_repeat Simple_repeat 2 48 0 584 126 10 0 chr6 24575411 24575514 -164704040 + L1MA8 LINE L1 6185 6288 -3 425 316 86 6 chr6 24575531 24575705 -164703849 + MLT1J LTR MaLR 3 190 -321 1561 148 71 53 chr6 24577031 24577268 -164702286 - MER2 DNA MER2_type 0 344 98 2151 118 3 0 chr6 24577268 24577556 -164701998 - AluSx SINE Alu -20 292 4 1561 148 71 53 chr6 24577556 24577656 -164701898 - MER2 DNA MER2_type -246 98 1 2303 109 0 0 chr6 24578852 24579163 -164700391 - AluSx SINE Alu -1 311 1 243 295 84 63 chr6 24581008 24581103 -164698451 + MIR SINE MIR 37 133 -75 206 354 19 50 chr6 24581776 24581937 -164697617 - MIR SINE MIR -75 187 32 288 0 0 0 chr6 24582115 24582147 -164697407 + (CA)n Simple_repeat Simple_repeat 2 33 0 926 172 59 5 chr6 24583763 24583966 -164695588 + L1MB2 LINE L1 5956 6169 -2 647 335 16 12 chr6 24584059 24584316 -164695238 + MIR SINE MIR 5 262 0 23 33 0 0 chr6 24584345 24584375 -164695179 + AT_rich Low_complexity Low_complexity 1 30 0 342 247 12 12 chr6 24584443 24584524 -164695030 + HAL1b LINE L1 65 145 -1203 783 296 34 24 chr6 24584856 24585150 -164694404 - MER102b DNA MER1_type 0 341 45 21 36 0 0 chr6 24585424 24585452 -164694102 + AT_rich Low_complexity Low_complexity 1 28 0 718 226 153 11 chr6 24585921 24586111 -164693443 + MER58A DNA MER1_type 6 222 -2 21 36 0 0 chr6 24586295 24586323 -164693231 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 24586467 24586496 -164693058 + AT_rich Low_complexity Low_complexity 1 29 0 236 262 36 0 chr6 24586622 24586706 -164692848 + L1M4 LINE L1 2378 2464 -3682 1879 226 78 31 chr6 24586706 24587382 -164692172 - L1MEc LINE L1 -3935 2890 2183 336 265 25 101 chr6 24587575 24587813 -164691741 - L1MEc LINE L1 -4811 1833 1517 735 39 64 29 chr6 24587813 24588436 -164691118 + (TA)n Simple_repeat Simple_repeat 1 645 0 580 271 109 26 chr6 24588437 24588698 -164690856 - L1MEc LINE L1 -5176 1649 1352 518 35 0 128 chr6 24588698 24588735 -164690819 + MADE1 DNA Mariner 3 24 -56 2269 96 7 0 chr6 24588735 24589027 -164690527 - AluSg SINE Alu -16 294 1 518 35 0 128 chr6 24589027 24589075 -164690479 + MADE1 DNA Mariner 24 77 -3 580 271 109 26 chr6 24589075 24589153 -164690401 - L1MEc LINE L1 -5473 1352 1282 385 148 267 40 chr6 24589191 24589292 -164690262 - MER58B DNA MER1_type -1 340 217 2252 111 0 0 chr6 24591378 24591676 -164687878 + AluSx SINE Alu 1 298 -14 187 315 157 0 chr6 24593524 24593613 -164685941 + L2 LINE L2 3207 3309 -4 1452 137 0 21 chr6 24594344 24594577 -164684977 - MER30 DNA MER1_type 0 230 3 1184 260 67 48 chr6 24594763 24595347 -164684207 - L1ME LINE L1 -4910 1170 599 207 0 0 0 chr6 24595347 24595370 -164684184 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1548 96 0 5 chr6 24595372 24595569 -164683985 - AluSc SINE Alu -31 278 83 1184 260 67 48 chr6 24595569 24595659 -164683895 - L1ME LINE L1 -5481 599 501 201 122 24 24 chr6 24596087 24596128 -164683426 + A-rich Low_complexity Low_complexity 2 42 0 2538 94 39 0 chr6 24596374 24596755 -164682799 - L1PA13 LINE L1 0 6163 5768 246 62 0 0 chr6 24596758 24596790 -164682764 + U5 snRNA snRNA 9 40 -76 194 125 0 25 chr6 24597004 24597044 -164682510 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 275 261 100 109 chr6 24597450 24597680 -164681874 - L3 LINE CR1 -179 1398 1171 180 359 0 33 chr6 24597702 24597794 -164681760 + MER5A DNA MER1_type 17 105 -84 317 336 40 24 chr6 24598394 24598519 -164681035 - MER5B DNA MER1_type -50 128 2 481 141 0 0 chr6 24599755 24599833 -164679721 + MADE1 DNA Mariner 1 78 -2 279 356 0 0 chr6 24599871 24599958 -164679596 + LTR67 LTR ERVL 130 216 -341 498 238 32 8 chr6 24600139 24600265 -164679289 + LTR67 LTR ERVL 429 557 0 2178 119 0 10 chr6 24602027 24602338 -164677216 + AluSx SINE Alu 1 308 -4 247 286 16 0 chr6 24602358 24602421 -164677133 + MER91B DNA MER1_type 6 69 -121 545 168 63 0 chr6 24602647 24602742 -164676812 - Tigger7 DNA MER2_type -1 2490 2390 * 689 130 35 9 chr6 24602732 24602847 -164676707 - Tigger7 DNA MER2_type -300 433 316 994 140 11 17 chr6 24602862 24603040 -164676514 - L1PB3 LINE L1 -7 6147 5971 2127 236 19 28 chr6 24603051 24603627 -164675927 - L1ME1 LINE L1 -174 5992 5422 237 372 31 16 chr6 24603862 24603991 -164675563 + L2 LINE L2 3183 3313 0 725 275 17 43 chr6 24604189 24604422 -164675132 - MIR SINE MIR 0 262 36 3123 175 88 14 chr6 24605705 24606262 -164673292 - MER44D DNA MER2_type -1882 705 90 2191 96 0 40 chr6 24606262 24606564 -164672990 + AluSg SINE Alu 1 290 -20 3123 175 88 14 chr6 24606564 24606662 -164672892 - MER44D DNA MER2_type -2497 90 1 250 366 84 8 chr6 24608220 24608351 -164671203 + L2 LINE L2 3132 3272 0 3299 72 21 0 chr6 24609228 24609661 -164669893 + MLT2A1 LTR ERVL 3 444 0 2373 84 0 0 chr6 24609693 24609991 -164669563 - AluY SINE Alu -13 298 1 229 365 47 0 chr6 24610159 24610266 -164669288 + MIR SINE MIR 3 114 -148 567 261 114 93 chr6 24610267 24610697 -164668857 + MLT1J1 LTR MaLR 3 441 -5 198 266 98 84 chr6 24610711 24610854 -164668700 + MIR SINE MIR 118 262 0 2390 83 32 69 chr6 24611792 24612199 -164667355 - MER48 LTR ERV1 -2 396 5 415 222 11 38 chr6 24612927 24613112 -164666442 + (TA)n Simple_repeat Simple_repeat 1 180 0 187 400 0 15 chr6 24613250 24613315 -164666239 + MIR SINE MIR 85 148 -60 23 0 0 0 chr6 24613626 24613649 -164665905 + AT_rich Low_complexity Low_complexity 1 23 0 2059 90 3 21 chr6 24614258 24614590 -164664964 - AluSq SINE Alu 0 327 1 585 336 21 21 chr6 24616692 24616933 -164662621 - MIR SINE MIR -15 247 7 807 147 32 108 chr6 24617371 24617622 -164661932 - Charlie1b DNA MER1_type -7 516 285 1049 120 54 0 chr6 24617636 24617803 -164661751 + MSTB2 LTR MaLR 1 176 -281 831 216 0 12 chr6 24617805 24617967 -164661587 - FRAM SINE Alu -17 159 1 1578 178 31 7 chr6 24617967 24618253 -164661301 + MSTB2 LTR MaLR 165 457 0 1061 243 39 4 chr6 24618253 24618512 -164661042 - Charlie1b DNA MER1_type -255 268 1 2061 96 3 81 chr6 24618632 24618955 -164660599 - AluSq SINE Alu -13 300 3 21 0 0 0 chr6 24619000 24619021 -164660533 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 24619275 24619298 -164660256 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr6 24620358 24620381 -164659173 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1901 153 0 10 chr6 24620389 24620684 -164658870 - AluJb SINE Alu -20 292 1 2382 90 3 0 chr6 24621274 24621574 -164657980 - AluSp SINE Alu -12 301 1 22 35 0 0 chr6 24621615 24621644 -164657910 + AT_rich Low_complexity Low_complexity 1 29 0 515 309 124 9 chr6 24623089 24623306 -164656248 + MIR SINE MIR 21 262 0 185 373 0 34 chr6 24627649 24627767 -164651787 + MIR3 SINE MIR 94 207 -1 524 305 30 25 chr6 24627814 24628011 -164651543 + MIR SINE MIR 15 212 -50 186 43 0 0 chr6 24628363 24628386 -164651168 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 406 360 23 11 chr6 24628444 24628619 -164650935 + MIR3 SINE MIR 28 204 -4 221 300 17 0 chr6 24628815 24628875 -164650679 - L2 LINE L2 -8 3264 3204 498 299 58 0 chr6 24629172 24629309 -164650245 + MIR SINE MIR 8 152 -110 215 374 79 14 chr6 24629574 24629788 -164649766 - L2 LINE L2 -834 2480 2253 684 171 173 11 chr6 24629846 24630048 -164649506 - MER33 DNA MER1_type -262 62 1 314 349 76 8 chr6 24630061 24630193 -164649361 - L2 LINE L2 0 3272 3132 1986 99 22 0 chr6 24630296 24630592 -164648962 - AluSg SINE Alu 0 304 3 315 345 94 27 chr6 24630667 24630995 -164648559 - L2 LINE L2 -107 3165 2816 225 320 52 56 chr6 24631078 24631309 -164648245 - L2 LINE L2 -1231 2083 1854 2152 103 36 3 chr6 24631559 24631861 -164647693 - AluSx SINE Alu 0 312 1 331 308 145 9 chr6 24632136 24632350 -164647204 - MIR SINE MIR -13 249 7 207 222 37 19 chr6 24633016 24633070 -164646484 + MIR SINE MIR 121 175 -87 246 32 0 0 chr6 24636288 24636319 -164643235 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 184 342 25 38 chr6 24637097 24637176 -164642378 + MIR SINE MIR 56 133 -75 394 381 118 23 chr6 24637391 24637790 -164641764 - L2 LINE L2 -21 3251 2815 257 273 0 0 chr6 24638749 24638804 -164640750 + polypyrimidine Low_complexity Low_complexity 6 60 0 630 257 23 6 chr6 24640377 24640548 -164639006 - L1ME3 LINE L1 -10 6152 5979 5393 156 48 16 chr6 24642439 24643464 -164636090 + L1MA7 LINE L1 4772 5859 -432 2126 69 4 4 chr6 24643464 24643741 -164635813 + AluY SINE Alu 22 298 -13 5393 156 48 16 chr6 24643741 24644189 -164635365 + L1MA7 LINE L1 5859 6291 0 192 77 0 0 chr6 24646447 24646473 -164633081 + (TA)n Simple_repeat Simple_repeat 2 27 0 548 318 57 0 chr6 24646891 24647083 -164632471 + MIR SINE MIR 58 260 -2 1440 70 0 0 chr6 24647756 24647942 -164631612 - L1PA7 LINE L1 -2 6152 5967 2476 222 30 29 chr6 24648987 24649204 -164630350 + L1PA6 LINE L1 4815 5030 -1124 1497 162 0 34 chr6 24649204 24649470 -164630084 - AluJb SINE Alu -21 291 35 2476 222 30 29 chr6 24649470 24650316 -164629238 + L1PA6 LINE L1 5030 5873 -281 300 378 51 0 chr6 24650316 24650512 -164629042 + L1ME LINE L1 5567 5772 -392 477 275 269 0 chr6 24652058 24652240 -164627314 + MIR SINE MIR 2 232 -30 1361 235 38 35 chr6 24652245 24652641 -164626913 + MLT2C1 LTR ERVL 1 397 0 1967 131 3 3 chr6 24653062 24653353 -164626201 - AluSx SINE Alu -21 291 1 317 269 66 51 chr6 24654398 24654569 -164624985 + MIR SINE MIR 18 191 -66 820 281 12 36 chr6 24654725 24654978 -164624576 - MIR SINE MIR -15 247 1 23 0 0 0 chr6 24655551 24655574 -164623980 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 24655739 24655764 -164623790 + AT_rich Low_complexity Low_complexity 1 25 0 429 311 77 16 chr6 24655890 24656073 -164623481 - MIR SINE MIR -56 206 13 280 187 198 55 chr6 24656496 24656587 -164622967 + MER69A DNA AcHobo 5 108 -69 460 292 65 18 chr6 24657606 24657774 -164621780 - MER5B DNA MER1_type -1 177 2 3728 56 2 0 chr6 24657927 24658395 -164621159 + L1PA7 LINE L1 5683 6151 -3 21 0 0 0 chr6 24658407 24658428 -164621126 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 24658505 24658530 -164621024 + AT_rich Low_complexity Low_complexity 1 25 0 426 219 0 109 chr6 24658592 24658711 -164620843 + MER81 DNA DNA 9 114 0 934 125 6 28 chr6 24659587 24659763 -164619791 + L1MA4 LINE L1 6123 6294 -6 755 199 7 0 chr6 24659791 24659937 -164619617 - L1ME1 LINE L1 -329 5837 5691 305 152 65 33 chr6 24659984 24660076 -164619478 - MER53 DNA DNA 0 189 95 358 307 42 18 chr6 24660778 24660944 -164618610 + MLT1H LTR MaLR 57 226 -323 787 250 105 34 chr6 24661225 24661633 -164617921 - Zaphod DNA AcHobo 0 4031 3595 333 155 36 101 chr6 24661635 24661854 -164617700 - Zaphod DNA AcHobo -3059 972 768 198 294 0 0 chr6 24662635 24662686 -164616868 - L2 LINE L2 -13 3300 3250 24 32 0 0 chr6 24662988 24663019 -164616535 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr6 24663087 24663120 -164616434 + AT_rich Low_complexity Low_complexity 1 33 0 1950 170 16 34 chr6 24663120 24663503 -164616051 - MLT1B LTR MaLR 0 390 15 492 333 31 13 chr6 24663653 24663881 -164615673 - MIR SINE MIR 0 262 31 23 0 0 0 chr6 24665193 24665216 -164614338 + AT_rich Low_complexity Low_complexity 1 23 0 1675 193 57 79 chr6 24668889 24669396 -164610158 - MLT1D LTR MaLR -8 497 2 246 351 87 54 chr6 24669649 24670164 -164609390 - L2 LINE L2 -418 2896 2365 324 298 140 28 chr6 24670723 24670790 -164608764 + L3 LINE CR1 67 125 -1452 2670 128 21 9 chr6 24670790 24671213 -164608341 - MSTA LTR MaLR 0 428 1 324 298 140 28 chr6 24671213 24671323 -164608231 + L3 LINE CR1 125 264 -1313 553 314 173 28 chr6 24671434 24671965 -164607589 + L3 LINE CR1 716 1323 -254 225 269 60 15 chr6 24671977 24672044 -164607510 - MER34C LTR ERV1 0 585 516 260 66 49 16 chr6 24672052 24672113 -164607441 + (TA)n Simple_repeat Simple_repeat 2 64 0 622 235 50 102 chr6 24672114 24672514 -164607040 - MER39 LTR ERV1 -69 638 260 318 208 42 62 chr6 24672489 24672585 -164606969 - LTR48B LTR ERV1 -547 97 4 * 279 316 68 28 chr6 24672589 24672766 -164606788 + L3 LINE CR1 1350 1533 -44 1784 106 110 7 chr6 24672818 24673091 -164606463 + AluSg SINE Alu 1 301 -9 360 217 65 0 chr6 24673370 24673462 -164606092 - MER5A DNA MER1_type -83 106 9 245 309 249 12 chr6 24673579 24673744 -164605810 + MIR SINE MIR 56 259 -3 246 296 22 52 chr6 24676881 24677016 -164602538 + L2 LINE L2 2925 3055 -217 242 235 12 0 chr6 24677370 24677451 -164602103 + (TA)n Simple_repeat Simple_repeat 1 82 0 186 103 0 0 chr6 24677469 24677498 -164602056 + (CA)n Simple_repeat Simple_repeat 2 30 0 305 277 25 17 chr6 24680054 24680173 -164599381 + L1ME4a LINE L1 5955 6074 -47 431 18 18 0 chr6 24680541 24680597 -164598957 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 870 84 17 0 chr6 24680862 24680981 -164598573 - AluSg/x SINE Alu -18 292 172 300 111 0 0 chr6 24680982 24681027 -164598527 + (T)n Simple_repeat Simple_repeat 1 45 0 205 261 87 14 chr6 24681994 24682063 -164597491 + MIR SINE MIR 30 103 -105 845 196 12 6 chr6 24682189 24682352 -164597202 - FRAM SINE Alu -12 164 1 22 35 0 0 chr6 24683402 24683431 -164596123 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr6 24684405 24684425 -164595129 + (A)n Simple_repeat Simple_repeat 1 20 0 215 154 0 26 chr6 24685434 24685473 -164594081 + GA-rich Low_complexity Low_complexity 2 39 0 217 159 32 0 chr6 24685546 24685609 -164593945 + GA-rich Low_complexity Low_complexity 1 65 0 320 265 341 0 chr6 24687781 24687913 -164591641 + MIR SINE MIR 9 185 -77 216 143 0 0 chr6 24688686 24688728 -164590826 + (TG)n Simple_repeat Simple_repeat 2 43 0 800 210 10 72 chr6 24689008 24689147 -164590407 - MER5A DNA MER1_type -6 183 58 2270 71 6 16 chr6 24689147 24689458 -164590096 + AluYb8 SINE Alu 1 308 -10 800 210 10 72 chr6 24689458 24689513 -164590041 - MER5A DNA MER1_type -131 58 1 434 293 101 47 chr6 24689586 24690095 -164589459 + MLT1G LTR MaLR 39 595 0 1086 166 10 20 chr6 24690528 24690727 -164588827 + AluJo SINE Alu 1 197 -115 185 283 0 33 chr6 24740752 24740812 -164538742 + MIR SINE MIR 156 213 -49 24 32 0 0 chr6 24741149 24741180 -164538374 + AT_rich Low_complexity Low_complexity 1 31 0 2841 0 0 3 chr6 24741313 24741621 -164537933 - AluYa5 SINE Alu -4 307 1 1938 217 125 96 chr6 24741802 24742984 -164536570 - L1MC5 LINE L1 -49 7912 6697 198 0 0 0 chr6 24744505 24744527 -164535027 + (T)n Simple_repeat Simple_repeat 1 22 0 209 233 0 0 chr6 24745470 24745513 -164534041 + A-rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr6 24745675 24745699 -164533855 + AT_rich Low_complexity Low_complexity 1 24 0 34 24 0 0 chr6 24746316 24746357 -164533197 + AT_rich Low_complexity Low_complexity 1 41 0 2339 181 26 28 chr6 24747664 24748129 -164531425 - MLT1C LTR MaLR -3 464 1 2152 127 0 0 chr6 24749423 24749722 -164529832 - AluSx SINE Alu -13 299 1 1351 182 54 124 chr6 24749965 24750465 -164529089 + MLT1C LTR MaLR 3 467 0 2104 122 7 3 chr6 24750826 24751306 -164528248 - AluSg SINE Alu 0 310 3 1906 145 3 3 chr6 24751769 24752051 -164527503 + AluSx SINE Alu 1 282 -30 213 39 0 0 chr6 24752058 24752084 -164527470 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 7352 181 12 29 chr6 24752198 24753479 -164526075 - L1PA16 LINE L1 -26 6140 4839 1319 175 0 118 chr6 24753479 24753827 -164525727 + AluJb SINE Alu 1 307 -5 7352 181 12 29 chr6 24753827 24755205 -164524349 - L1PA16 LINE L1 -1327 4839 3529 1652 205 13 19 chr6 24755204 24755579 -164523975 - L1 LINE L1 -1822 4324 3952 * 276 103 52 0 chr6 24755579 24755637 -164523917 + (TA)n Simple_repeat Simple_repeat 1 61 0 3741 237 43 26 chr6 24755644 24756857 -164522697 - L1 LINE L1 -2653 3493 2260 193 250 21 0 chr6 24757088 24757136 -164522418 - L2 LINE L2 -1 3312 3264 24 32 0 0 chr6 24757406 24757437 -164522117 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 24757487 24757508 -164522046 + AT_rich Low_complexity Low_complexity 1 21 0 307 290 93 0 chr6 24758132 24758239 -164521315 + MIR3 SINE MIR 87 203 -5 567 12 38 0 chr6 24758714 24758794 -164520760 + (TG)n Simple_repeat Simple_repeat 2 84 0 26 74 0 0 chr6 24759811 24759865 -164519689 + AT_rich Low_complexity Low_complexity 1 54 0 416 289 62 58 chr6 24762728 24762936 -164516618 - MIR SINE MIR -27 235 27 34 0 0 0 chr6 24763282 24763316 -164516238 + AT_rich Low_complexity Low_complexity 1 34 0 587 176 8 0 chr6 24763546 24763671 -164515883 + G-rich Low_complexity Low_complexity 5 130 0 1077 187 77 4 chr6 24763677 24763912 -164515642 + MLT1C LTR MaLR 206 457 -10 267 236 36 55 chr6 24765070 24765180 -164514374 + MER117 DNA MER1_type 18 125 -72 297 0 0 0 chr6 24766413 24766446 -164513108 + (CA)n Simple_repeat Simple_repeat 1 33 0 343 300 100 0 chr6 24767013 24767143 -164512411 + MIR SINE MIR 96 238 -24 258 240 40 0 chr6 24767173 24767248 -164512306 - MIR SINE MIR -111 151 74 204 130 43 22 chr6 24767818 24767864 -164511690 + (TA)n Simple_repeat Simple_repeat 1 47 0 2201 112 0 0 chr6 24768699 24768976 -164510578 + AluSg SINE Alu 1 277 -33 216 67 0 0 chr6 24770000 24770030 -164509524 + (CA)n Simple_repeat Simple_repeat 1 30 0 323 345 117 43 chr6 24770582 24770938 -164508616 - L2 LINE L2 0 3313 2914 2557 61 0 0 chr6 24770938 24771249 -164508305 + AluY SINE Alu 1 311 0 323 345 117 43 chr6 24771249 24771353 -164508201 - L2 LINE L2 -399 2914 2819 236 333 33 11 chr6 24771407 24771497 -164508057 - L2 LINE L2 -594 2720 2629 14908 160 21 8 chr6 24771870 24773356 -164506198 - L1MA2 LINE L1 0 7723 6257 2683 16 7 3 chr6 24773356 24773664 -164505890 - AluY SINE Alu -2 309 1 14908 160 21 8 chr6 24773664 24773966 -164505588 - L1MA2 LINE L1 -1466 6257 5960 333 0 0 0 chr6 24773966 24774003 -164505551 + (TG)n Simple_repeat Simple_repeat 2 38 0 14908 160 21 8 chr6 24774003 24776440 -164503114 - L1MA2 LINE L1 -1763 5960 3241 1443 202 0 7 chr6 24776437 24776719 -164502835 + L1M1 LINE L1 441 720 -6845 * 13211 162 74 11 chr6 24776716 24779213 -164500341 - L1MA2 LINE L1 -4893 2672 18 224 291 23 58 chr6 24779217 24779303 -164500251 + MIR SINE MIR 79 161 -101 2094 115 30 0 chr6 24779552 24779906 -164499648 + AluSq SINE Alu 1 363 0 1703 192 6 12 chr6 24779968 24780306 -164499248 - MER58B DNA MER1_type -4 337 2 827 259 42 5 chr6 24781261 24781473 -164498081 + MER58A DNA MER1_type 5 224 0 221 128 21 0 chr6 24781718 24781765 -164497789 + (TG)n Simple_repeat Simple_repeat 2 49 0 1420 179 6 88 chr6 24781983 24782165 -164497389 - AluJo SINE Alu -19 293 147 2415 83 0 0 chr6 24782165 24782465 -164497089 + AluSg SINE Alu 1 300 -10 1420 179 6 88 chr6 24782465 24782601 -164496953 - AluJo SINE Alu -165 147 1 559 291 205 24 chr6 24784207 24784588 -164494966 + MLT1J2 LTR MaLR 1 450 0 180 125 0 0 chr6 24785634 24785666 -164493888 + (CAGAGA)n Simple_repeat Simple_repeat 4 35 0 512 362 119 15 chr6 24785905 24786173 -164493381 + L2 LINE L2 2977 3272 0 201 236 0 18 chr6 24786907 24786962 -164492592 + (TG)n Simple_repeat Simple_repeat 1 54 0 237 132 0 0 chr6 24787003 24787041 -164492513 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 192 77 0 0 chr6 24788124 24788150 -164491404 + (CCTA)n Simple_repeat Simple_repeat 1 26 0 201 128 51 0 chr6 24788354 24788393 -164491161 + T-rich Low_complexity Low_complexity 2 42 0 1325 226 68 19 chr6 24788759 24789126 -164490428 - ERVL-B1 LTR ERVL -5378 386 2 1513 212 166 22 chr6 24789129 24789176 -164490378 - MLT2B1 LTR ERVL 0 520 481 396 0 0 0 chr6 24789176 24789220 -164490334 + (TG)n Simple_repeat Simple_repeat 1 44 0 363 44 0 0 chr6 24789222 24789267 -164490287 + (GA)n Simple_repeat Simple_repeat 2 46 0 1513 212 166 22 chr6 24789267 24789669 -164489885 - MLT2B1 LTR ERVL -39 481 3 559 157 20 13 chr6 24790065 24790218 -164489336 + CT-rich Low_complexity Low_complexity 3 156 0 1030 258 46 13 chr6 24791877 24792179 -164487375 + L1PB4 LINE L1 1 312 -6537 3767 142 77 1 chr6 24792179 24792840 -164486714 + MER50 LTR ERV1 1 711 -23 319 368 0 0 chr6 24792858 24792983 -164486571 + L1PB4 LINE L1 326 450 -6399 2832 250 10 4 chr6 24793841 24794552 -164485002 + L1PB4 LINE L1 1067 1781 -5068 645 25 0 0 chr6 24794553 24794632 -164484922 + (TCTCCC)n Simple_repeat Simple_repeat 1 79 0 5563 59 16 41 chr6 24794632 24795778 -164483776 + SVA Other Other 50 866 -520 6647 65 14 41 chr6 24795795 24796814 -164482740 + SVA Other Other 433 1386 0 11142 222 22 14 chr6 24796814 24800643 -164478911 + L1PB4 LINE L1 1773 5655 -1193 3946 145 1 18 chr6 24800643 24801321 -164478233 + L1PB4 LINE L1 6178 6847 -11 288 384 69 6 chr6 24801335 24801494 -164478060 - MIR3 SINE MIR -21 187 19 1291 239 37 17 chr6 24801735 24802090 -164477464 - MLT1A2 LTR MaLR -11 363 2 2111 129 119 35 chr6 24802254 24802597 -164476957 + MSTA LTR MaLR 1 383 -45 2255 102 3 0 chr6 24802597 24802891 -164476663 + AluSp SINE Alu 1 295 -18 2111 129 119 35 chr6 24802891 24802942 -164476612 + MSTA LTR MaLR 383 428 0 2403 81 0 0 chr6 24803014 24803309 -164476245 - AluY SINE Alu -16 295 1 1151 197 22 14 chr6 24803418 24803641 -164475913 + AluJo SINE Alu 84 308 -4 1703 150 3 41 chr6 24803902 24804196 -164475358 + AluSx SINE Alu 1 283 -29 25 0 0 0 chr6 24805064 24805089 -164474465 + AT_rich Low_complexity Low_complexity 1 25 0 372 119 0 0 chr6 24805388 24805447 -164474107 + (CA)n Simple_repeat Simple_repeat 2 60 0 264 286 44 25 chr6 24805685 24805888 -164473666 - L1MC/D LINE L1 -1908 5900 5694 1834 111 92 0 chr6 24805890 24806152 -164473402 + AluSq SINE Alu 12 297 -16 253 250 111 0 chr6 24806154 24806226 -164473328 - LTR50 LTR ERVL -475 320 241 674 258 30 5 chr6 24806490 24806688 -164472866 - MER58A DNA MER1_type -1 223 21 23 78 0 0 chr6 24806908 24806959 -164472595 + AT_rich Low_complexity Low_complexity 1 51 0 1740 120 25 0 chr6 24806971 24807245 -164472309 + MER83C LTR ERV1 1 281 -92 1129 111 24 53 chr6 24807251 24807400 -164472154 + MER83C LTR ERV1 173 316 -57 2138 117 30 7 chr6 24807400 24807699 -164471855 - AluSx SINE Alu -6 306 1 1129 111 24 53 chr6 24807699 24807756 -164471798 + MER83C LTR ERV1 316 373 0 22 0 0 0 chr6 24807830 24807852 -164471702 + AT_rich Low_complexity Low_complexity 1 22 0 443 309 101 72 chr6 24808003 24808151 -164471403 + HAL1b LINE L1 16 158 -1190 273 57 0 0 chr6 24808151 24808186 -164471368 + (TG)n Simple_repeat Simple_repeat 2 36 0 443 309 101 72 chr6 24808186 24808389 -164471165 + HAL1b LINE L1 158 354 -994 345 47 0 0 chr6 24808389 24808432 -164471122 + (CA)n Simple_repeat Simple_repeat 2 44 0 443 309 101 72 chr6 24808432 24808655 -164470899 + HAL1b LINE L1 354 601 -747 1906 218 58 83 chr6 24808655 24808703 -164470851 - MLT2B3 LTR ERVL 0 554 506 695 62 10 0 chr6 24808703 24808800 -164470754 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 1906 218 58 83 chr6 24808800 24809319 -164470235 - MLT2B3 LTR ERVL -48 506 1 443 309 101 72 chr6 24809319 24809366 -164470188 + HAL1b LINE L1 601 645 -703 499 280 67 40 chr6 24809419 24809790 -164469764 + L1MEc LINE L1 1428 1808 -4588 2426 154 5 29 chr6 24809807 24810228 -164469326 + Tigger2a DNA MER2_type 3 413 -21 30 0 0 0 chr6 24810578 24810608 -164468946 + AT_rich Low_complexity Low_complexity 1 30 0 286 274 57 28 chr6 24811899 24812005 -164467549 + MIR SINE MIR 83 191 -71 903 213 23 32 chr6 24812077 24812293 -164467261 - MIR SINE MIR -48 214 1 33 25 0 0 chr6 24812509 24812549 -164467005 + AT_rich Low_complexity Low_complexity 1 40 0 961 236 71 46 chr6 24812554 24812948 -164466606 - L1ME3A LINE L1 -8 6162 5759 433 250 188 18 chr6 24812956 24813232 -164466322 - L1ME3A LINE L1 -554 5608 5286 772 308 89 31 chr6 24813243 24814241 -164465313 - L1ME3A LINE L1 -913 5233 4178 296 378 85 35 chr6 24814347 24814950 -164464604 + L2 LINE L2 1783 2415 -899 27 29 0 0 chr6 24816821 24816855 -164462699 + AT_rich Low_complexity Low_complexity 1 34 0 256 323 55 31 chr6 24817085 24817212 -164462342 + L2 LINE L2 3143 3272 0 188 170 43 0 chr6 24817401 24817448 -164462106 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 2158 132 7 0 chr6 24817637 24817947 -164461607 - AluSq SINE Alu -1 312 1 189 225 0 0 chr6 24818402 24818442 -164461112 + MIR SINE MIR 73 112 -150 21 36 0 0 chr6 24819797 24819825 -164459729 + AT_rich Low_complexity Low_complexity 1 28 0 653 285 26 0 chr6 24820817 24821010 -164458544 + MIR SINE MIR 52 249 -13 361 367 40 46 chr6 24821415 24821938 -164457616 - L2 LINE L2 -337 2977 2458 591 312 68 23 chr6 24821943 24822164 -164457390 - MIR SINE MIR -15 247 17 614 275 93 25 chr6 24822282 24822518 -164457036 + MIR SINE MIR 1 252 -10 208 356 89 0 chr6 24822536 24822597 -164456957 - L2 LINE L2 -1009 2305 2251 1802 205 3 19 chr6 24822597 24822968 -164456586 - MLT1A1 LTR MaLR 0 365 1 208 356 89 0 chr6 24822968 24823007 -164456547 - L2 LINE L2 -1063 2251 2196 372 253 72 103 chr6 24823163 24823511 -164456043 + HAL1 LINE L1 1439 1775 -732 377 282 122 69 chr6 24823592 24823751 -164455803 + L1M4 LINE L1 3877 4026 -2120 847 211 0 24 chr6 24823751 24823917 -164455637 - FRAM SINE Alu -3 163 2 377 282 122 69 chr6 24823917 24824178 -164455376 + L1M4 LINE L1 4026 4320 -1826 285 265 76 60 chr6 24824343 24824445 -164455109 + L1MC4a LINE L1 2678 2777 -3369 1542 199 2 91 chr6 24824445 24824851 -164454703 - MLT1A2 LTR MaLR -4 370 1 285 265 76 60 chr6 24824851 24825235 -164454319 + L1MC4a LINE L1 2777 3172 -2974 2448 79 0 3 chr6 24825405 24825708 -164453846 + AluSg SINE Alu 3 304 -6 1971 125 7 0 chr6 24825848 24826159 -164453395 + AluSx SINE Alu 1 313 0 2411 93 0 0 chr6 24826605 24826915 -164452639 + AluSx SINE Alu 1 310 -2 658 126 10 0 chr6 24827077 24827180 -164452374 + AluSp/q SINE Alu 201 304 -9 417 291 97 33 chr6 24827235 24827565 -164451989 + L1MC4a LINE L1 4491 4841 -1305 333 273 22 71 chr6 24827684 24827867 -164451687 + L1MC4a LINE L1 4994 5167 -979 1404 260 117 47 chr6 24827984 24828703 -164450851 + L1MC4a LINE L1 5260 6028 -1780 4888 28 0 0 chr6 24828761 24829333 -164450221 + L1PA3 LINE L1 5584 6155 0 21 0 0 31 chr6 24829333 24829346 -164450208 + AT_rich Low_complexity Low_complexity 1 13 -18 2938 60 3 5 chr6 24829346 24829726 -164449828 + L1PA7 LINE L1 5769 6147 -7 21 0 0 31 chr6 24829726 24829744 -164449810 + AT_rich Low_complexity Low_complexity 13 31 0 3020 137 46 61 chr6 24829999 24830654 -164448900 - MER39B LTR ERV1 -4 649 5 1267 139 48 10 chr6 24830677 24831109 -164448445 - LTR54 LTR ERV1 0 510 1 261 0 0 0 chr6 24832030 24832059 -164447495 + (T)n Simple_repeat Simple_repeat 1 29 0 2116 79 58 7 chr6 24833155 24833447 -164446107 + AluY SINE Alu 3 309 -2 2439 119 23 3 chr6 24834400 24834752 -164444802 - THE1B LTR MaLR -5 359 1 3425 116 51 75 chr6 24834995 24835659 -164443895 + MER39B LTR ERV1 6 653 0 401 237 51 8 chr6 24835849 24835967 -164443587 - MER103 DNA DNA -43 123 1 2012 139 0 23 chr6 24836409 24836718 -164442836 + AluSx SINE Alu 1 302 -10 237 83 0 0 chr6 24837514 24837550 -164442004 + (TC)n Simple_repeat Simple_repeat 1 36 0 212 57 0 29 chr6 24837591 24837626 -164441928 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 387 358 40 0 chr6 24838411 24838587 -164440967 + MIR SINE MIR 12 194 -68 2457 51 3 3 chr6 24838746 24839041 -164440513 + AluY SINE Alu 1 295 -16 29 28 0 0 chr6 24839419 24839455 -164440099 + AT_rich Low_complexity Low_complexity 1 36 0 532 330 35 5 chr6 24840545 24840742 -164438812 + L2 LINE L2 1728 1930 -1384 2548 246 70 21 chr6 24840746 24841845 -164437709 + L1ME1 LINE L1 5013 6166 0 630 265 13 57 chr6 24841901 24842131 -164437423 + L2 LINE L2 1918 2137 -1177 267 308 26 0 chr6 24842127 24842205 -164437349 - L2 LINE L2 -240 3073 2994 * 825 194 22 39 chr6 24842220 24842400 -164437154 - MER45A DNA AcHobo -1 177 1 895 317 54 38 chr6 24842403 24843128 -164436426 + L2 LINE L2 2550 3290 -23 216 0 0 0 chr6 24843128 24843152 -164436402 + (CA)n Simple_repeat Simple_repeat 2 25 0 354 139 12 93 chr6 24843253 24843339 -164436215 + MER116 DNA Mariner 2 80 0 216 0 0 0 chr6 24844734 24844758 -164434796 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 306 0 0 0 chr6 24844757 24844791 -164434763 + (TG)n Simple_repeat Simple_repeat 2 35 0 2509 52 0 19 chr6 24845012 24845321 -164434233 - AluY SINE Alu -8 303 1 391 302 16 31 chr6 24845664 24845793 -164433761 + MER5B DNA MER1_type 1 127 -51 596 240 53 7 chr6 24845810 24845960 -164433594 - L1ME3A LINE L1 -9 6161 6005 228 303 0 15 chr6 24845966 24846032 -164433522 + MER5B DNA MER1_type 114 178 0 323 369 38 0 chr6 24846125 24846282 -164433272 - MIR SINE MIR -54 208 46 461 266 190 11 chr6 24846283 24846467 -164433087 + MIR SINE MIR 8 224 -38 186 103 0 0 chr6 24846935 24846964 -164432590 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 190 267 229 19 chr6 24847509 24847614 -164431940 + MIR SINE MIR 17 143 -65 25 31 0 0 chr6 24848000 24848032 -164431522 + AT_rich Low_complexity Low_complexity 1 32 0 862 208 89 10 chr6 24848642 24848844 -164430710 - MER20 DNA MER1_type 0 219 2 385 267 29 0 chr6 24848916 24849021 -164430533 - MER103 DNA DNA -46 120 13 2125 116 3 0 chr6 24849182 24849475 -164430079 - AluSq SINE Alu -17 296 3 297 302 120 71 chr6 24849873 24850307 -164429247 + MLT1K LTR MaLR 134 588 0 2411 55 0 23 chr6 24852039 24852347 -164427207 + AluY SINE Alu 9 309 -2 577 296 71 15 chr6 24852373 24852569 -164426985 + MIR SINE MIR 32 238 -24 2220 113 0 3 chr6 24853687 24853997 -164425557 - AluSq SINE Alu -2 311 3 394 247 10 10 chr6 24854102 24854199 -164425355 - MER63 DNA MER1_type -62 774 678 1943 168 32 121 chr6 24856551 24857104 -164422450 + MLT1D LTR MaLR 2 505 0 272 155 0 17 chr6 24857149 24857207 -164422347 + (TA)n Simple_repeat Simple_repeat 1 57 0 2098 101 0 11 chr6 24857757 24858075 -164421479 - AluSx SINE Alu 0 315 1 190 0 67 0 chr6 24859119 24859149 -164420405 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1142 213 101 19 chr6 24859174 24859432 -164420122 + AluJo SINE Alu 1 279 -33 371 111 0 0 chr6 24859432 24859486 -164420068 + Alu SINE Alu 246 299 -3 2220 113 0 7 chr6 24861564 24861873 -164417681 - AluSq SINE Alu -6 307 1 2411 82 3 0 chr6 24862137 24862440 -164417114 - AluY SINE Alu -7 304 1 582 87 47 13 chr6 24865251 24865400 -164414154 + (CA)n Simple_repeat Simple_repeat 2 155 0 216 0 0 0 chr6 24865597 24865621 -164413933 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 225 296 185 37 chr6 24865641 24865776 -164413778 + MER5A DNA MER1_type 3 157 -32 * 475 270 169 7 chr6 24865660 24865808 -164413746 - MER5A DNA MER1_type -6 183 12 203 274 55 0 chr6 24866437 24866510 -164413044 + L2 LINE L2 561 637 -2677 525 345 101 27 chr6 24866739 24867302 -164412252 + L2 LINE L2 1465 2069 -1245 1951 166 7 0 chr6 24867625 24867927 -164411627 - AluJb SINE Alu -8 304 1 192 343 78 60 chr6 24868638 24868757 -164410797 + L2 LINE L2 3104 3228 -44 1678 177 34 95 chr6 24868757 24868872 -164410682 + MLT1C LTR MaLR 2 122 -345 2361 67 0 0 chr6 24868872 24869184 -164410370 + AluY SINE Alu 1 312 0 1678 177 34 95 chr6 24869184 24869563 -164409991 + MLT1C LTR MaLR 122 467 0 192 343 78 60 chr6 24869563 24869609 -164409945 + L2 LINE L2 3228 3272 0 291 231 97 75 chr6 24869692 24869826 -164409728 + MIR SINE MIR 126 262 0 275 279 19 39 chr6 24871994 24872098 -164407456 - MER20B DNA MER1_type -619 164 63 250 192 14 14 chr6 24873232 24873305 -164406249 + GA-rich Low_complexity Low_complexity 2 74 0 335 208 19 38 chr6 24874143 24874249 -164405305 + L1MC5 LINE L1 7810 7913 -48 2486 19 0 0 chr6 24874251 24874569 -164404985 - L1PA3 LINE L1 -754 5392 5075 6335 35 0 0 chr6 24874569 24875311 -164404243 + L1PA3 LINE L1 5405 6155 0 2265 213 33 59 chr6 24875479 24876107 -164403447 - LTR9 LTR ERV1 0 612 1 272 340 81 32 chr6 24876617 24876802 -164402752 + MIR SINE MIR 12 205 -57 298 292 57 57 chr6 24876966 24877175 -164402379 + L2 LINE L2 2071 2279 -1035 2170 88 7 29 chr6 24978487 24978795 -164300759 - AluSx SINE Alu -7 305 5 231 313 91 40 chr6 24979553 24979652 -164299902 - MIR SINE MIR -89 119 16 2076 107 0 31 chr6 24979949 24980278 -164299276 + AluSg SINE Alu 1 320 0 2266 99 3 7 chr6 24980728 24981031 -164298523 - AluSx SINE Alu -10 302 1 858 225 38 21 chr6 24982874 24983110 -164296444 - MLT1C LTR MaLR -225 242 3 311 200 57 0 chr6 24983127 24983197 -164296357 - L1ME LINE L1 -274 5847 5774 186 225 25 0 chr6 24983900 24983940 -164295614 + L2 LINE L2 3151 3191 -81 657 308 25 1 chr6 24985340 24985551 -164294003 - MIR SINE MIR -3 259 45 240 319 25 34 chr6 24985905 24986024 -164293530 - L2 LINE L2 0 3272 3155 476 253 68 48 chr6 24986426 24986716 -164292838 - L1ME4a LINE L1 -216 5905 5618 243 271 0 0 chr6 24986716 24986775 -164292779 + tRNA-Lys-AAG tRNA tRNA 1 59 -17 2222 162 25 33 chr6 24986781 24987341 -164292213 + MLT2A2 LTR ERVL 5 554 0 314 313 101 23 chr6 24987430 24987647 -164291907 - L1ME4a LINE L1 -2296 5512 5279 519 347 46 44 chr6 24987790 24988470 -164291084 - L2 LINE L2 -43 3229 2556 405 176 44 0 chr6 24990550 24990618 -164288936 - MER63 DNA MER1_type -317 743 673 418 252 61 48 chr6 24991936 24992083 -164287471 + MIR SINE MIR 83 231 -31 2229 113 0 3 chr6 24992128 24992430 -164287124 - AluSp SINE Alu -12 301 1 21 36 0 0 chr6 24992430 24992458 -164287096 + AT_rich Low_complexity Low_complexity 1 28 0 843 306 104 44 chr6 24992516 24993238 -164286316 - L1MC4a LINE L1 -1751 6057 5293 866 282 135 18 chr6 24993244 24993872 -164285682 - L1MC4a LINE L1 -884 5262 4561 3707 107 8 8 chr6 24994462 24994969 -164284585 + MER84 LTR ERV1 1 507 0 313 242 0 0 chr6 24995331 24995397 -164284157 + MIR SINE MIR 134 199 -63 25 0 0 0 chr6 24996139 24996164 -164283390 + AT_rich Low_complexity Low_complexity 1 25 0 183 42 0 0 chr6 24996425 24996449 -164283105 + (TC)n Simple_repeat Simple_repeat 2 25 0 514 200 24 106 chr6 24996613 24996783 -164282771 - MIR SINE MIR 0 262 107 563 266 44 0 chr6 24997426 24997584 -164281970 + MIR SINE MIR 98 262 0 2259 106 3 25 chr6 24998266 24998586 -164280968 - AluSp SINE Alu 0 313 1 402 334 180 23 chr6 24998922 24999227 -164280327 - L2 LINE L2 -41 3272 2920 898 201 49 22 chr6 25000141 25000325 -164279229 - MER5A DNA MER1_type 0 189 1 17715 36 1 0 chr6 25001089 25003887 -164275667 + L1PA3 LINE L1 3355 6152 -3 182 37 37 0 chr6 25005218 25005245 -164274309 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 276 354 94 68 chr6 25005309 25005693 -164273861 - L2 LINE L2 -50 3222 2829 1807 144 0 11 chr6 25006057 25006367 -164273187 + AluSx SINE Alu 1 307 0 2142 200 26 32 chr6 25007184 25007649 -164271905 + MLT1C LTR MaLR 6 467 0 1888 113 8 11 chr6 25007938 25008203 -164271351 + AluSx SINE Alu 39 302 -10 206 213 43 0 chr6 25008318 25008365 -164271189 + GA-rich Low_complexity Low_complexity 4 52 0 241 241 0 0 chr6 25008477 25008531 -164271023 + HsTC2 DNA Tc2 1238 1291 -607 190 268 49 49 chr6 25008850 25008932 -164270622 - MIR SINE MIR -109 153 72 5255 124 6 34 chr6 25008973 25009236 -164270318 - L1PA16 LINE L1 0 6166 5897 1959 131 18 3 chr6 25009236 25009519 -164270035 + AluSx SINE Alu 1 287 -25 5255 124 6 34 chr6 25009519 25010086 -164269468 - L1PA16 LINE L1 -269 5897 5359 2198 121 0 31 chr6 25010086 25010408 -164269146 - AluSx SINE Alu 0 312 1 864 247 30 46 chr6 25010460 25010723 -164268831 + MIR SINE MIR 2 260 -2 380 335 108 43 chr6 25011316 25012048 -164267506 + L2 LINE L2 2464 3255 -58 5876 58 9 7 chr6 25012408 25013166 -164266388 + L1PA8 LINE L1 5413 6172 0 225 0 0 0 chr6 25013193 25013218 -164266336 + (T)n Simple_repeat Simple_repeat 1 25 0 3701 157 19 7 chr6 25013505 25014198 -164265356 + L1MA5 LINE L1 5515 6215 -85 2860 186 12 5 chr6 25014343 25014945 -164264609 + L1P LINE L1 4757 5362 -784 2235 116 0 10 chr6 25014945 25015256 -164264298 + AluY SINE Alu 1 308 -3 568 257 47 0 chr6 25015532 25015703 -164263851 + MER112 DNA MER1_type 81 259 -1 775 218 84 106 chr6 25016738 25017013 -164262541 + MLT1D LTR MaLR 199 505 0 535 184 10 0 chr6 25017013 25017116 -164262438 + MLT1D-int LTR MaLR 1 104 -1267 740 266 171 36 chr6 25017116 25017560 -164261994 + MLT1D LTR MaLR 1 504 -1 4097 211 22 82 chr6 25017561 25018833 -164260721 + MLT1D-int LTR MaLR 1 1195 -176 883 243 181 35 chr6 25018835 25019177 -164260377 + MLT1D LTR MaLR 112 503 -2 928 292 148 49 chr6 25019225 25019852 -164259702 + L3 LINE CR1 887 1575 -2 791 199 0 0 chr6 25020641 25020787 -164258767 + AluJb SINE Alu 1 146 -166 180 0 0 0 chr6 25020851 25020871 -164258683 + (CAAAT)n Simple_repeat Simple_repeat 2 21 0 2061 141 7 10 chr6 25021359 25021663 -164257891 + AluSx SINE Alu 1 303 -9 1975 147 0 3 chr6 25022211 25022517 -164257037 + AluJb SINE Alu 1 305 -7 926 227 12 16 chr6 25022698 25022949 -164256605 + MER76 LTR ERV 1 250 -438 906 228 25 40 chr6 25023017 25023293 -164256261 + MER76 LTR ERV 384 655 -33 319 359 61 0 chr6 25023929 25024060 -164255494 - MIR SINE MIR -111 151 13 11582 185 17 38 chr6 25024166 25024217 -164255337 - L1PB3 LINE L1 -313 5841 5790 384 22 0 0 chr6 25024217 25024262 -164255292 + (TG)n Simple_repeat Simple_repeat 2 46 0 11582 185 17 38 chr6 25024262 25025300 -164254254 - L1PB3 LINE L1 -364 5790 4732 296 59 98 0 chr6 25025300 25025351 -164254203 + MADE1 DNA Mariner 1 56 -24 11582 185 17 38 chr6 25025351 25026149 -164253405 - L1PB3 LINE L1 -1422 4732 3919 2416 90 0 0 chr6 25026149 25026460 -164253094 - AluY SINE Alu 0 311 1 11582 185 17 38 chr6 25026460 25028113 -164251441 - L1PB3 LINE L1 -2235 3919 2322 348 24 0 0 chr6 25028184 25028225 -164251329 + (CA)n Simple_repeat Simple_repeat 2 42 0 607 232 56 25 chr6 25028427 25028711 -164250843 - L1M4 LINE L1 -1639 4507 4215 2215 83 0 0 chr6 25031324 25031600 -164247954 - AluSq SINE Alu -1 312 37 847 154 29 87 chr6 25031978 25032186 -164247368 - MLT2B3 LTR ERVL -8 546 351 349 313 112 0 chr6 25034010 25034144 -164245410 + MIR SINE MIR 34 182 -80 1300 139 109 98 chr6 25034742 25034906 -164244648 + THE1C LTR MaLR 1 162 -213 642 91 0 0 chr6 25034906 25035005 -164244549 + (CTCG)n Simple_repeat Simple_repeat 2 100 0 1300 139 109 98 chr6 25035005 25035208 -164244346 + THE1C LTR MaLR 162 372 -3 2831 182 64 49 chr6 25035348 25036068 -164243486 - MER45B DNA AcHobo 0 1040 310 907 193 25 35 chr6 25036077 25036279 -164243275 - MER45B DNA AcHobo -838 202 3 304 252 89 49 chr6 25036279 25036401 -164243153 + MER112 DNA MER1_type 128 254 -6 474 338 152 0 chr6 25036412 25036622 -164242932 + MIR SINE MIR 20 261 -1 25 0 0 0 chr6 25037080 25037105 -164242449 + AT_rich Low_complexity Low_complexity 1 25 0 1504 215 20 7 chr6 25037105 25037403 -164242151 + AluJo SINE Alu 1 302 -10 647 347 133 25 chr6 25039321 25040010 -164239544 + L2 LINE L2 1752 2515 -799 328 369 92 10 chr6 25040561 25040767 -164238787 + L2 LINE L2 2836 3058 -214 181 279 59 15 chr6 25040899 25040967 -164238587 + L2 LINE L2 3186 3256 -16 1916 142 21 21 chr6 25043628 25043965 -164235589 - MER1B DNA MER1_type -1 338 2 2199 184 29 45 chr6 25043994 25044506 -164235048 - MLT1D LTR MaLR 0 505 2 1892 323 131 22 chr6 25044721 25046053 -164233501 - L2 LINE L2 -50 3263 1787 2270 97 10 3 chr6 25047223 25047531 -164232023 + AluSp SINE Alu 1 310 -3 317 232 80 0 chr6 25048460 25048572 -164230982 + L1ME4a LINE L1 5804 5924 -197 204 97 0 0 chr6 25048576 25048607 -164230947 + (TG)n Simple_repeat Simple_repeat 1 31 0 303 130 0 0 chr6 25048607 25048661 -164230893 + (GA)n Simple_repeat Simple_repeat 2 55 0 310 261 202 17 chr6 25048661 25048780 -164230774 + L1ME4a LINE L1 5976 6116 -5 263 104 21 0 chr6 25049489 25049537 -164230017 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 319 378 13 42 chr6 25049828 25050066 -164229488 + L3b LINE CR1 1326 1556 -27 317 217 217 26 chr6 25050066 25050218 -164229336 + L3b LINE CR1 1201 1381 -202 29068 116 14 58 chr6 25051268 25057686 -164221868 - L1PA7 LINE L1 -13 6141 13 367 278 37 0 chr6 25059063 25059171 -164220383 - MIR SINE MIR 0 262 151 1847 152 0 14 chr6 25059173 25059469 -164220085 + AluSx SINE Alu 1 292 -20 213 121 0 0 chr6 25059493 25059526 -164220028 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 271 215 19 47 chr6 25059665 25059772 -164219782 + HAL1 LINE L1 2029 2132 -375 1850 196 63 42 chr6 25059988 25060133 -164219421 + LTR40a LTR ERVL 3 143 -376 940 231 33 0 chr6 25060133 25060345 -164219209 + MER20 DNA MER1_type 1 219 0 1850 196 63 42 chr6 25060345 25060433 -164219121 + LTR40a LTR ERVL 143 228 -291 438 148 11 0 chr6 25060433 25060521 -164219033 + L1MB4 LINE L1 6088 6176 -4 1850 196 63 42 chr6 25060521 25060792 -164218762 + LTR40a LTR ERVL 228 519 0 354 281 70 47 chr6 25061629 25061800 -164217754 - HAL1 LINE L1 -1 2506 2332 45 45 0 0 chr6 25061862 25061928 -164217626 + AT_rich Low_complexity Low_complexity 1 66 0 3245 250 102 47 chr6 25062070 25064203 -164215351 - HAL1 LINE L1 -237 2270 4 1329 25 0 6 chr6 25065363 25065522 -164214032 - L1PA5 LINE L1 -8 6146 5989 465 35 0 0 chr6 25065522 25065580 -164213974 + L1PA4 LINE L1 5890 5947 -208 31 0 0 0 chr6 25067330 25067361 -164212193 + AT_rich Low_complexity Low_complexity 1 31 0 207 301 36 24 chr6 25067677 25067760 -164211794 + MER5A DNA MER1_type 11 94 -95 185 321 36 12 chr6 25067727 25067811 -164211743 - MER5A DNA MER1_type -87 102 17 * 532 288 42 42 chr6 25067913 25068125 -164211429 + MIR SINE MIR 50 261 -1 951 126 77 13 chr6 25068824 25069108 -164210446 - MLT1B LTR MaLR 0 390 7 471 259 52 7 chr6 25069462 25069597 -164209957 + MIR SINE MIR 71 211 -51 180 311 0 0 chr6 25069897 25069942 -164209612 + L3 LINE CR1 891 935 -642 402 74 0 0 chr6 25070160 25070214 -164209340 + (TG)n Simple_repeat Simple_repeat 1 54 0 2078 117 16 10 chr6 25071296 25071603 -164207951 - AluSx SINE Alu -3 309 1 288 356 73 26 chr6 25071737 25071928 -164207626 + MIR SINE MIR 28 227 -35 4369 184 41 13 chr6 25072565 25074403 -164205151 - L1MB3 LINE L1 0 6183 4296 213 290 161 11 chr6 25075151 25075278 -164204276 - MIR SINE MIR -23 185 45 2331 80 0 13 chr6 25075311 25075623 -164203931 + AluY SINE Alu 1 308 -3 373 285 244 0 chr6 25075723 25075895 -164203659 - MIR SINE MIR -31 231 18 2505 73 0 0 chr6 25075927 25076228 -164203326 - AluY SINE Alu -10 301 1 2470 77 3 3 chr6 25076317 25076628 -164202926 - AluY SINE Alu 0 311 1 620 215 224 5 chr6 25076922 25077127 -164202427 + MIR SINE MIR 10 259 -3 2598 129 42 4 chr6 25078940 25079397 -164200157 + L1MA8 LINE L1 5808 6281 -10 1431 191 14 24 chr6 25079589 25079882 -164199672 - AluJo SINE Alu -22 290 1 23 0 0 0 chr6 25080947 25080970 -164198584 + AT_rich Low_complexity Low_complexity 1 23 0 21 82 0 0 chr6 25082413 25082462 -164197092 + AT_rich Low_complexity Low_complexity 1 49 0 2030 104 36 4 chr6 25082871 25083181 -164196373 - AluSq SINE Alu 0 319 1 2075 118 0 16 chr6 25085998 25086302 -164193252 + AluSc SINE Alu 1 299 -10 8978 168 52 11 chr6 25087047 25088820 -164190734 - L1PBa LINE L1 -5016 1847 1 251 164 49 16 chr6 25088829 25088890 -164190664 - L1MA7 LINE L1 -112 6179 6117 712 266 111 30 chr6 25088903 25089413 -164190141 - L1MB3 LINE L1 -2502 3644 3071 984 161 0 29 chr6 25091878 25092052 -164187502 - AluJo SINE Alu -43 269 101 392 276 98 37 chr6 25092143 25092306 -164187248 + MIR3 SINE MIR 23 195 -13 199 381 83 32 chr6 25093715 25093993 -164185561 - L3 LINE CR1 -23 1554 1263 759 242 113 17 chr6 25094434 25094665 -164184889 - MIR SINE MIR 0 262 10 264 30 0 0 chr6 25094734 25094767 -164184787 + (CA)n Simple_repeat Simple_repeat 1 33 0 324 0 0 0 chr6 25095072 25095108 -164184446 + (TG)n Simple_repeat Simple_repeat 2 37 0 479 286 74 114 chr6 25095395 25095850 -164183704 + HAL1 LINE L1 813 1284 -1223 1720 145 18 4 chr6 25095850 25096126 -164183428 + AluSx SINE Alu 1 280 -32 479 286 74 114 chr6 25096126 25096153 -164183401 + HAL1 LINE L1 1284 1311 -1196 966 65 53 6 chr6 25096153 25096323 -164183231 + GA-rich Low_complexity Low_complexity 3 180 0 479 286 74 114 chr6 25096323 25096551 -164183003 + HAL1 LINE L1 1311 1496 -1011 2165 90 6 0 chr6 25096754 25097065 -164182489 + L1PA4 LINE L1 5843 6155 0 1916 149 41 33 chr6 25097439 25097801 -164181753 - MLT1A1 LTR MaLR 0 365 1 1968 126 13 33 chr6 25097978 25098279 -164181275 + AluJb SINE Alu 1 295 -17 236 226 137 48 chr6 25098290 25098414 -164181140 + HAL1 LINE L1 2295 2429 -78 237 288 106 0 chr6 25098588 25098654 -164180900 - L2 LINE L2 -219 3053 2981 356 306 6 38 chr6 25098720 25098880 -164180674 - L2 LINE L2 -290 2982 2828 530 301 109 18 chr6 25100055 25100284 -164179270 - MIR SINE MIR -1 261 12 2349 109 0 0 chr6 25100409 25100713 -164178841 + AluSg SINE Alu 1 304 -6 2033 164 3 0 chr6 25101107 25101406 -164178148 + AluSx SINE Alu 1 300 -12 718 291 52 20 chr6 25101436 25101780 -164177774 + MLT1J1 LTR MaLR 63 417 -29 2189 116 3 3 chr6 25101987 25102289 -164177265 + AluSx SINE Alu 1 302 -10 1931 141 0 3 chr6 25102640 25102930 -164176624 - AluSq SINE Alu -24 289 1 520 249 69 42 chr6 25103224 25103585 -164175969 + L1MEd LINE L1 833 1203 -4916 1032 280 45 84 chr6 25103863 25104914 -164174640 - HERV16 LTR ERVL -2898 2098 1585 558 340 18 14 chr6 25105187 25105466 -164174088 - HERV16 LTR ERVL -3799 1197 918 419 122 131 97 chr6 25105987 25106176 -164173378 + MER4A LTR ERV1 1 203 -262 561 233 88 35 chr6 25106476 25106752 -164172802 + MER4C LTR ERV1 275 459 -6 543 325 5 0 chr6 25106761 25106952 -164172602 - HERV16 LTR ERVL -4764 232 41 510 220 72 151 chr6 25106994 25107371 -164172183 - LTR16A1 LTR ERVL -2 455 109 647 295 112 44 chr6 25107577 25108861 -164170693 + L1M4 LINE L1 2885 4256 -1890 2552 54 0 0 chr6 25108880 25109178 -164170376 + AluY SINE Alu 1 298 -13 1031 186 13 0 chr6 25109178 25109404 -164170150 - L1 LINE L1 -1507 4639 4411 237 33 0 0 chr6 25109916 25109946 -164169608 + (CA)n Simple_repeat Simple_repeat 1 30 0 293 270 22 0 chr6 25110019 25110108 -164169446 + MIR SINE MIR 172 262 0 285 336 90 0 chr6 25110242 25110364 -164169190 - MIR SINE MIR -89 173 41 190 313 75 0 chr6 25110662 25110729 -164168825 - L2 LINE L2 -1 3312 3241 1125 210 46 65 chr6 25110882 25111254 -164168300 + MLT1A1 LTR MaLR 1 365 0 420 278 126 16 chr6 25111895 25112083 -164167471 - MIR SINE MIR -22 240 29 8643 179 33 7 chr6 25112328 25115502 -164164052 + L1PBa LINE L1 1734 4990 -1872 22 0 0 0 chr6 25115676 25115698 -164163856 + AT_rich Low_complexity Low_complexity 1 22 0 198 359 80 31 chr6 25117604 25117955 -164161599 + L2 LINE L2 1777 2144 -1170 853 200 0 7 chr6 25117961 25118116 -164161438 - FRAM SINE Alu -23 153 1 416 329 189 23 chr6 25118116 25118645 -164160909 + L2 LINE L2 2130 2746 -568 2283 133 78 10 chr6 25118646 25119046 -164160508 + L1MA8 LINE L1 5861 6287 -4 222 91 0 0 chr6 25119688 25119721 -164159833 + (TG)n Simple_repeat Simple_repeat 2 34 0 15536 51 0 5 chr6 25119953 25121859 -164157695 - L1P LINE L1 -4244 1902 6 1854 126 32 0 chr6 25122016 25122318 -164157236 - AluSp SINE Alu 0 311 1 194 212 0 0 chr6 25122321 25122354 -164157200 - MIR SINE MIR -229 33 1 2245 89 4 0 chr6 25122859 25123163 -164156391 - AluSx SINE Alu 0 307 3 627 319 113 0 chr6 25124759 25124988 -164154566 - MIR SINE MIR -4 258 4 527 262 211 23 chr6 25125113 25125369 -164154185 + L2 LINE L2 2069 2372 -942 832 311 113 23 chr6 25125421 25125958 -164153596 + L2 LINE L2 2734 3313 0 185 287 223 0 chr6 25125947 25126041 -164153513 - MIR3 SINE MIR -32 176 62 * 2200 90 27 0 chr6 25126831 25126953 -164152601 + AluY SINE Alu 1 118 -193 333 0 0 0 chr6 25126953 25126990 -164152564 + (CA)n Simple_repeat Simple_repeat 2 38 0 2200 90 27 0 chr6 25126990 25127167 -164152387 + AluY SINE Alu 118 308 -3 1675 81 27 9 chr6 25128093 25128314 -164151240 + L1PA8 LINE L1 5941 6165 -7 202 333 108 11 chr6 25129340 25129433 -164150121 - MIR SINE MIR -95 167 66 434 299 22 15 chr6 25130019 25130153 -164149401 + MIR3 SINE MIR 67 201 -7 504 254 68 59 chr6 25131354 25131590 -164147964 + L2 LINE L2 3033 3270 -43 307 286 61 27 chr6 25232431 25232578 -164046976 - MIR SINE MIR -2 260 109 26 0 0 0 chr6 25235864 25235890 -164043664 + AT_rich Low_complexity Low_complexity 1 26 0 226 322 102 17 chr6 25235890 25236008 -164043546 - L2 LINE L2 0 3313 3186 202 196 43 0 chr6 25236882 25236928 -164042626 - MER91C DNA MER1_type -36 104 57 639 98 0 0 chr6 25236941 25237033 -164042521 + (TA)n Simple_repeat Simple_repeat 1 92 0 1798 135 193 14 chr6 25237776 25238124 -164041430 - MSTA LTR MaLR -18 410 1 1086 213 57 92 chr6 25238235 25238639 -164040915 + MLT1B LTR MaLR 1 390 0 208 139 0 0 chr6 25239563 25239599 -164039955 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 971 194 16 0 chr6 25240247 25240433 -164039121 + MER5A DNA MER1_type 1 189 0 1049 276 103 61 chr6 25241204 25241766 -164037788 + MLT2F LTR ERVL 21 612 -51 1514 149 35 116 chr6 25241766 25242163 -164037391 - MLT1A1 LTR MaLR 0 365 1 1049 276 103 61 chr6 25242163 25242209 -164037345 + MLT2F LTR ERVL 612 655 -8 281 234 26 26 chr6 25242216 25242293 -164037261 + HERVL-F LTR ERVL 4 80 -5574 367 331 40 40 chr6 25242463 25242765 -164036789 - MLT1I LTR MaLR -45 364 63 351 310 38 70 chr6 25243040 25243327 -164036227 + HAL1b LINE L1 273 550 -798 2071 105 36 10 chr6 25244222 25244527 -164035027 + AluSp SINE Alu 1 313 0 297 303 89 23 chr6 25244951 25245428 -164034126 + L1MC/D LINE L1 3589 4097 -2049 15154 141 35 29 chr6 25245785 25247374 -164032180 + Tigger4(Zombi) DNA MER2_type 1 1616 -1115 1775 154 0 4 chr6 25247374 25247646 -164031908 - AluSx SINE Alu -13 299 29 15154 141 35 29 chr6 25247646 25248768 -164030786 + Tigger4(Zombi) DNA MER2_type 1616 2729 -2 23 68 0 0 chr6 25248815 25248859 -164030695 + AT_rich Low_complexity Low_complexity 1 44 0 374 305 78 59 chr6 25248961 25249217 -164030337 + L1MC/D LINE L1 4759 5019 -1127 23 0 0 0 chr6 25249359 25249382 -164030172 + AT_rich Low_complexity Low_complexity 1 23 0 470 339 76 31 chr6 25249458 25249930 -164029624 + L1MC/D LINE L1 5261 5760 -674 24 67 0 0 chr6 25250233 25250278 -164029276 + AT_rich Low_complexity Low_complexity 1 45 0 27 49 0 0 chr6 25250335 25250376 -164029178 + AT_rich Low_complexity Low_complexity 1 41 0 1099 252 77 75 chr6 25250389 25251016 -164028538 - HAL1b LINE L1 -500 848 221 233 346 108 14 chr6 25251310 25251524 -164028030 - L2 LINE L2 -599 2715 2482 25 31 0 0 chr6 25251541 25251573 -164027981 + AT_rich Low_complexity Low_complexity 1 32 0 2469 56 0 7 chr6 25251575 25251878 -164027676 - AluY SINE Alu -10 301 1 567 290 84 22 chr6 25252051 25253123 -164026431 + L1M4 LINE L1 3564 4715 -1431 * 13585 158 13 16 chr6 25253117 25254322 -164025232 + L1P3 LINE L1 4 1210 -5251 189 0 0 0 chr6 25254322 25254343 -164025211 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 13585 158 13 16 chr6 25254343 25256815 -164022739 + L1P3 LINE L1 1210 3733 -2728 3192 127 21 6 chr6 25256844 25257358 -164022196 - L1P LINE L1 -2055 4091 3570 2259 96 6 0 chr6 25257359 25257672 -164021882 + L1PA8A LINE L1 5803 6117 -14 207 0 0 0 chr6 25257672 25257695 -164021859 + (CA)n Simple_repeat Simple_repeat 2 24 0 414 352 54 39 chr6 25257697 25258103 -164021451 + L1M4 LINE L1 4711 5122 -1024 242 294 0 16 chr6 25258206 25258267 -164021287 + L1M LINE L1 5257 5317 -845 1951 150 0 13 chr6 25258267 25258567 -164020987 + AluSx SINE Alu 1 296 -16 242 294 0 16 chr6 25258567 25258631 -164020923 + L1M LINE L1 5317 5380 -782 2729 239 62 42 chr6 25258631 25259810 -164019744 - L1MDa LINE L1 -2343 4197 2996 608 162 0 48 chr6 25259846 25259951 -164019603 - FLAM_A SINE Alu -42 100 1 991 221 48 43 chr6 25260036 25260603 -164018951 - L1MDa LINE L1 -3658 2882 2316 * 22917 143 37 21 chr6 25260602 25261266 -164018288 - L1PA7 LINE L1 -5 6409 5757 2210 86 40 7 chr6 25261266 25261567 -164017987 - AluY SINE Alu 0 311 1 22917 143 37 21 chr6 25261567 25267234 -164012320 - L1PA7 LINE L1 -657 5757 2 27 29 0 0 chr6 25267286 25267320 -164012234 + AT_rich Low_complexity Low_complexity 1 34 0 654 174 96 0 chr6 25267375 25267490 -164012064 + FLAM_C SINE Alu 2 127 -16 280 357 94 13 chr6 25267786 25268010 -164011544 - MIR SINE MIR -14 248 7 29 47 0 0 chr6 25268125 25268168 -164011386 + AT_rich Low_complexity Low_complexity 1 43 0 1551 180 9 43 chr6 25268168 25268518 -164011036 - L1MA6 LINE L1 0 6300 5963 216 135 0 0 chr6 25269849 25269886 -164009668 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 224 196 0 54 chr6 25270330 25270386 -164009168 - L2 LINE L2 -5 3267 3215 32 57 0 0 chr6 25270646 25270699 -164008855 + AT_rich Low_complexity Low_complexity 1 53 0 2509 254 62 17 chr6 25272679 25273490 -164006064 - L1ME1 LINE L1 -5 6161 5315 3105 132 24 21 chr6 25273494 25274702 -164004852 + L1PA14 LINE L1 4775 6158 -3 734 199 27 63 chr6 25274756 25274977 -164004577 - L1ME1 LINE L1 -873 5273 5061 449 247 25 57 chr6 25275469 25275627 -164003927 + MER5A DNA MER1_type 7 159 -30 27 49 0 0 chr6 25276086 25276127 -164003427 + AT_rich Low_complexity Low_complexity 1 41 0 307 278 57 108 chr6 25277566 25277760 -164001794 - MER5A DNA MER1_type -5 184 1 202 290 16 0 chr6 25279568 25279630 -163999924 + CT-rich Low_complexity Low_complexity 1 63 0 181 116 23 23 chr6 25280691 25280734 -163998820 + (TA)n Simple_repeat Simple_repeat 2 44 0 2018 107 24 86 chr6 25281146 25281529 -163998025 - THE1C LTR MaLR -2 373 15 233 264 0 19 chr6 25281546 25281599 -163997955 - L2 LINE L2 -68 3204 3153 1567 96 45 0 chr6 25281700 25281920 -163997634 - MER30 DNA MER1_type 0 230 1 186 43 0 0 chr6 25282015 25282038 -163997516 + (TAA)n Simple_repeat Simple_repeat 1 23 0 1072 251 183 9 chr6 25282619 25283041 -163996513 + MLT2B2 LTR ERVL 1 495 -20 451 298 79 65 chr6 25283247 25283600 -163995954 + MER20B DNA MER1_type 4 361 -422 419 85 0 0 chr6 25283609 25283668 -163995886 + MADE1 DNA Mariner 22 80 0 956 273 75 13 chr6 25283675 25284063 -163995491 + MER20B DNA MER1_type 371 782 -1 413 303 146 43 chr6 25284084 25284434 -163995120 - L2 LINE L2 -743 2571 2186 196 379 45 15 chr6 25284493 25284625 -163994929 - MIR SINE MIR -72 190 55 1828 222 60 25 chr6 25284750 25285103 -163994451 + LTR40b LTR ERVL 1 375 -87 2952 93 25 16 chr6 25285103 25285543 -163994011 + MLT2A1 LTR ERVL 1 444 0 1828 222 60 25 chr6 25285543 25285635 -163993919 + LTR40b LTR ERVL 375 462 0 661 307 39 79 chr6 25285649 25286137 -163993417 - L2 LINE L2 -147 3166 2619 297 75 0 0 chr6 25286220 25286260 -163993294 + (TTA)n Simple_repeat Simple_repeat 1 40 0 265 362 18 18 chr6 25288256 25288419 -163991135 - L2 LINE L2 -1903 1411 1249 264 311 38 30 chr6 25288477 25288609 -163990945 + MARNA DNA Mariner 415 547 -39 408 209 304 20 chr6 25288637 25288838 -163990716 + L1MD2 LINE L1 6088 6345 -14 25 65 0 0 chr6 25289725 25289771 -163989783 + AT_rich Low_complexity Low_complexity 1 46 0 1575 258 185 19 chr6 25290106 25290859 -163988695 + L2 LINE L2 2194 3069 -244 1153 268 69 26 chr6 25290966 25291470 -163988084 + L1ME2 LINE L1 5578 6103 -61 22 35 0 0 chr6 25291660 25291689 -163987865 + AT_rich Low_complexity Low_complexity 1 29 0 367 308 50 66 chr6 25291693 25292011 -163987543 + L1ME LINE L1 2851 3163 -2983 2876 6 0 0 chr6 25292544 25292855 -163986699 - AluYb8 SINE Alu -7 311 1 350 318 67 30 chr6 25292855 25293154 -163986400 + L1ME LINE L1 3863 4172 -1974 226 309 37 6 chr6 25293191 25293353 -163986201 + L1ME LINE L1 4242 4408 -1738 22 0 0 0 chr6 25293556 25293578 -163985976 + AT_rich Low_complexity Low_complexity 1 22 0 331 294 154 33 chr6 25293667 25293966 -163985588 + L1ME LINE L1 5411 5745 -417 3696 194 6 30 chr6 25294633 25295373 -163984181 + L1MB8 LINE L1 5388 6109 -69 2266 105 0 0 chr6 25295373 25295667 -163983887 - AluSx SINE Alu -18 294 1 3696 194 6 30 chr6 25295667 25295730 -163983824 + L1MB8 LINE L1 6109 6172 -6 2139 85 0 14 chr6 25296359 25296641 -163982913 + AluY SINE Alu 23 300 -11 1424 176 62 38 chr6 25297258 25297548 -163982006 - AluJo SINE Alu -15 297 1 1325 90 6 0 chr6 25297618 25297795 -163981759 - AluY SINE Alu -1 310 133 2345 96 0 3 chr6 25297795 25298107 -163981447 - AluY SINE Alu 0 311 1 1758 299 136 23 chr6 25298133 25299277 -163980277 - L2 LINE L2 0 3313 2032 296 229 16 10 chr6 25299515 25299716 -163979838 + (TA)n Simple_repeat Simple_repeat 1 202 0 2243 91 3 0 chr6 25299732 25300017 -163979537 - AluSp SINE Alu -26 287 2 236 186 70 0 chr6 25300838 25300924 -163978630 + (TA)n Simple_repeat Simple_repeat 1 92 0 22 109 0 0 chr6 25300949 25301041 -163978513 + AT_rich Low_complexity Low_complexity 1 92 0 336 199 28 50 chr6 25301062 25301243 -163978311 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 2738 78 93 5 chr6 25302104 25302514 -163977040 + LTR7 LTR ERV1 3 448 -2 243 0 0 0 chr6 25302613 25302640 -163976914 + (A)n Simple_repeat Simple_repeat 1 27 0 2525 84 0 0 chr6 25303140 25303450 -163976104 - AluSg SINE Alu 0 310 1 1794 208 20 20 chr6 25303634 25304042 -163975512 + L1MB4 LINE L1 5631 6038 -142 600 202 69 12 chr6 25304669 25304842 -163974712 - MER5A DNA MER1_type -6 183 1 618 127 18 9 chr6 25305158 25305268 -163974286 + L1MB4 LINE L1 6021 6131 -49 2146 108 7 0 chr6 25306186 25306473 -163973081 + AluSq SINE Alu 1 289 -24 203 0 0 36 chr6 25306477 25306505 -163973049 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 2173 113 3 13 chr6 25306968 25307279 -163972275 - AluSp SINE Alu -5 308 1 204 97 0 0 chr6 25307795 25307826 -163971728 + (TG)n Simple_repeat Simple_repeat 1 31 0 216 0 0 0 chr6 25308428 25308452 -163971102 + (TATG)n Simple_repeat Simple_repeat 2 25 0 272 331 15 46 chr6 25308454 25308584 -163970970 - L2 LINE L2 -4 3309 3184 1437 249 82 15 chr6 25308614 25309153 -163970401 - MLT2F LTR ERVL -14 649 35 570 214 174 0 chr6 25309191 25309369 -163970185 + L1ME3A LINE L1 5956 6164 -6 290 344 94 56 chr6 25309595 25309891 -163969663 - L2 LINE L2 -429 2885 2578 548 267 68 0 chr6 25309891 25310052 -163969502 + MIR SINE MIR 1 172 -90 431 280 98 53 chr6 25310491 25310716 -163968838 + L1MC4a LINE L1 5814 6048 -1760 516 366 48 5 chr6 25311171 25311545 -163968009 + L1MC4a LINE L1 6414 6803 -1005 352 144 122 22 chr6 25311556 25311646 -163967908 + L1ME2 LINE L1 5631 5729 -435 404 242 109 8 chr6 25311694 25311822 -163967732 - L1ME2 LINE L1 -274 5890 5750 732 264 43 4 chr6 25311871 25312102 -163967452 + L1ME2 LINE L1 5912 6151 -13 776 225 38 19 chr6 25312106 25312315 -163967239 + L1MC4a LINE L1 6345 6557 -1251 627 312 78 12 chr6 25312489 25313038 -163966516 + MLT2F LTR ERVL 30 661 -2 279 310 39 32 chr6 25313039 25313194 -163966360 + HERVL-F LTR ERVL 4 159 -5495 1620 173 15 7 chr6 25313211 25313514 -163966040 - AluJo SINE Alu 0 313 9 426 344 70 36 chr6 25313585 25313943 -163965611 + HERVL-F LTR ERVL 282 651 -5113 1354 330 19 29 chr6 25313964 25314610 -163964944 + HERVL-F LTR ERVL 778 1416 -4348 2958 260 44 17 chr6 25314618 25314726 -163964828 + HERVL-F LTR ERVL 1624 1728 -4036 2164 176 102 11 chr6 25314726 25315187 -163964367 + MLT1D LTR MaLR 3 505 0 2958 260 44 17 chr6 25315187 25316010 -163963544 + HERVL-F LTR ERVL 1728 2622 -3142 800 323 170 16 chr6 25316013 25316571 -163962983 + MLT2F LTR ERVL 14 657 -6 414 0 0 0 chr6 25316572 25316618 -163962936 + (TG)n Simple_repeat Simple_repeat 1 46 0 3413 231 117 12 chr6 25316619 25317821 -163961733 + L1MC4 LINE L1 6618 8036 -6 1253 274 154 20 chr6 25317849 25318350 -163961204 - MLT1G1 LTR MaLR -27 568 1 942 90 0 0 chr6 25318380 25318514 -163961040 + (GGGA)n Simple_repeat Simple_repeat 4 137 0 337 315 45 48 chr6 25318774 25319152 -163960402 + L1MC4 LINE L1 7098 7474 -568 510 92 0 13 chr6 25319931 25319943 -163959611 + LTR3b LTR ERVK 426 437 -63 2006 153 36 59 chr6 25319943 25320107 -163959447 + LTR3 LTR ERVK 1 167 -262 2215 113 3 0 chr6 25320107 25320408 -163959146 - AluSp SINE Alu -11 302 1 2006 153 36 59 chr6 25320408 25320682 -163958872 + LTR3 LTR ERVK 167 429 0 510 92 0 13 chr6 25320682 25320745 -163958809 + LTR3b LTR ERVK 437 500 0 303 300 0 0 chr6 25320745 25320825 -163958729 - L2 LINE L2 -948 2366 2287 246 62 0 0 chr6 25320825 25320857 -163958697 + (TAA)n Simple_repeat Simple_repeat 3 34 0 325 280 189 29 chr6 25321401 25321576 -163957978 - MIR SINE MIR -13 249 47 201 163 0 0 chr6 25322501 25322550 -163957004 + (TG)n Simple_repeat Simple_repeat 2 50 0 197 33 33 0 chr6 25324514 25324544 -163955010 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 22 0 0 0 chr6 25325300 25325322 -163954232 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr6 25325556 25325579 -163953975 + (TG)n Simple_repeat Simple_repeat 2 24 0 252 208 0 39 chr6 25325684 25325761 -163953793 - L1M LINE L1 -745 5429 5356 266 241 52 0 chr6 25325796 25325854 -163953700 - L2 LINE L2 -68 3245 3185 21 57 0 0 chr6 25325888 25325923 -163953631 + AT_rich Low_complexity Low_complexity 1 35 0 2867 9 0 6 chr6 25326057 25326377 -163953177 - AluYb8 SINE Alu 0 318 1 2124 196 70 29 chr6 25329669 25330215 -163949339 + L1MC3 LINE L1 6672 7239 -546 635 192 20 0 chr6 25330218 25330364 -163949190 - L1MC3 LINE L1 -188 7597 7449 2689 107 0 3 chr6 25330996 25331361 -163948193 + THE1B LTR MaLR 1 364 0 22 80 0 0 chr6 25331365 25331415 -163948139 + AT_rich Low_complexity Low_complexity 1 50 0 43264 42 4 8 chr6 25331470 25333332 -163946222 + L1PA4 LINE L1 4 1872 -4283 3304 71 5 12 chr6 25333332 25333756 -163945798 - SVA Other Other -1 1385 965 43264 42 4 8 chr6 25333756 25338067 -163941487 + L1PA4 LINE L1 1872 6150 -5 429 119 0 0 chr6 25338067 25338134 -163941420 + AluS SINE Alu 230 296 -13 281 267 0 0 chr6 25438291 25438351 -163841203 + L1M4 LINE L1 2703 2762 -3384 224 286 11 0 chr6 25438369 25438460 -163841094 + (TA)n Simple_repeat Simple_repeat 2 93 0 377 277 75 21 chr6 25438486 25438674 -163840880 + L2 LINE L2 3116 3313 0 1862 126 43 98 chr6 25438910 25439307 -163840247 - THE1C LTR MaLR 0 375 1 216 156 44 0 chr6 25440653 25440698 -163838856 + T-rich Low_complexity Low_complexity 3 49 0 5864 77 3 73 chr6 25441266 25442154 -163837400 + LTR12 LTR ERV1 1 826 0 2267 103 0 0 chr6 25442726 25443017 -163836537 - AluY SINE Alu -20 291 1 244 229 69 84 chr6 25443120 25443251 -163836303 - MIR SINE MIR -10 252 124 23 0 0 0 chr6 25445674 25445697 -163833857 + AT_rich Low_complexity Low_complexity 1 23 0 2870 10 0 0 chr6 25445999 25446310 -163833244 - AluY SINE Alu 0 311 1 3471 136 6 11 chr6 25446337 25446865 -163832689 + MER61E LTR ERV1 1 525 -44 204 284 45 15 chr6 25447070 25447137 -163832417 - MIR3 SINE MIR -43 165 97 267 283 85 69 chr6 25447445 25447692 -163831862 + L3b LINE CR1 1129 1379 -204 1514 206 75 51 chr6 25448550 25449041 -163830513 - MLT1D LTR MaLR -2 503 1 183 156 0 0 chr6 25449077 25449109 -163830445 + (CA)n Simple_repeat Simple_repeat 1 32 0 210 143 0 0 chr6 25452003 25452038 -163827516 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr6 25452134 25452162 -163827392 + AT_rich Low_complexity Low_complexity 1 28 0 291 239 125 0 chr6 25452190 25452278 -163827276 - MIR SINE MIR -111 151 53 885 136 14 0 chr6 25453852 25453999 -163825555 + L1MA2 LINE L1 6128 6276 -28 21 0 0 0 chr6 25454041 25454062 -163825492 + AT_rich Low_complexity Low_complexity 1 21 0 1801 291 55 45 chr6 25455493 25456354 -163823200 - L2 LINE L2 -2439 875 7 191 103 26 0 chr6 25457667 25457706 -163821848 + A-rich Low_complexity Low_complexity 2 41 0 207 100 0 0 chr6 25458030 25458060 -163821494 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 449 298 13 32 chr6 25458060 25458207 -163821347 - L2 LINE L2 -13 3300 3155 355 312 123 78 chr6 25458330 25458450 -163821104 - L2 LINE L2 -351 2963 2850 988 191 42 114 chr6 25458450 25458853 -163820701 + MLT1A2 LTR MaLR 1 374 0 355 312 123 78 chr6 25458853 25459542 -163820012 - L2 LINE L2 -464 2850 2117 345 47 0 0 chr6 25459604 25459647 -163819907 + (CA)n Simple_repeat Simple_repeat 1 43 0 185 312 54 107 chr6 25460317 25460634 -163818920 + L2 LINE L2 2920 3219 -53 2339 101 23 49 chr6 25460672 25461057 -163818497 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr6 25461209 25461231 -163818323 + AT_rich Low_complexity Low_complexity 1 22 0 369 305 88 62 chr6 25461245 25461599 -163817955 - L2 LINE L2 -1 3312 2950 282 320 63 93 chr6 25461794 25462222 -163817332 - L2 LINE L2 -38 3234 2820 527 321 50 23 chr6 25463770 25463991 -163815563 + MIR SINE MIR 33 259 -3 180 252 103 56 chr6 25464514 25464621 -163814933 - L2 LINE L2 -933 2381 2270 838 153 0 0 chr6 25465159 25465290 -163814264 - FLAM_A SINE Alu -2 131 1 180 0 0 0 chr6 25467091 25467111 -163812443 + (A)n Simple_repeat Simple_repeat 1 20 0 253 314 14 0 chr6 25467112 25467182 -163812372 - L2 LINE L2 -9 3304 3234 203 246 261 0 chr6 25467219 25467288 -163812266 - L2 LINE L2 -39 3274 3188 2238 91 0 58 chr6 25468179 25468509 -163811045 + AluY SINE Alu 1 311 0 559 307 83 32 chr6 25468767 25468985 -163810569 + MIR SINE MIR 8 236 -26 3011 114 14 0 chr6 25469004 25469450 -163810104 + L1PA15 LINE L1 5708 6159 -6 874 146 8 0 chr6 25469706 25469836 -163809718 - FLAM_C SINE Alu -12 131 1 870 219 61 35 chr6 25470892 25471120 -163808434 + MLT1F1 LTR MaLR 1 234 -333 1452 260 81 35 chr6 25471280 25471846 -163807708 + MLT1E LTR MaLR 1 592 -1 848 196 6 37 chr6 25471849 25472012 -163807542 + MLT1F1 LTR MaLR 307 464 -103 1474 243 31 52 chr6 25472036 25472518 -163807036 + MER74B LTR ERVL 81 552 -70 1615 90 5 31 chr6 25472559 25472782 -163806772 + AluY SINE Alu 82 298 -13 482 196 18 27 chr6 25472804 25472916 -163806638 + MLT1F1 LTR MaLR 457 567 0 356 336 0 15 chr6 25472999 25473133 -163806421 + MIR SINE MIR 20 151 -111 22 35 0 0 chr6 25473931 25473960 -163805594 + AT_rich Low_complexity Low_complexity 1 29 0 2268 263 80 5 chr6 25474035 25474858 -163804696 - L1M4 LINE L1 -1010 5136 4252 2357 102 30 19 chr6 25476247 25476618 -163802936 - THE1C LTR MaLR 0 375 1 261 327 129 0 chr6 25479407 25479508 -163800046 + MIR SINE MIR 51 164 -98 1194 278 50 45 chr6 25479574 25480234 -163799320 + L2 LINE L2 2657 3311 -2 1809 165 49 19 chr6 25481258 25481891 -163797663 - MER44D DNA MER2_type -2 603 1 191 324 124 29 chr6 25482017 25482122 -163797432 - L2 LINE L2 -22 3250 3136 2448 85 0 0 chr6 25482211 25482517 -163797037 + AluSc SINE Alu 1 306 -3 386 300 131 8 chr6 25483122 25483252 -163796302 + L2 LINE L2 3168 3313 0 266 333 19 19 chr6 25483780 25483885 -163795669 + L2 LINE L2 3168 3272 0 2043 206 31 53 chr6 25484995 25485506 -163794048 - MLT1F LTR MaLR 0 542 43 781 223 68 7 chr6 25485620 25485867 -163793687 + MLT2B1 LTR ERVL 1 268 -247 22 0 0 0 chr6 25487157 25487179 -163792375 + AT_rich Low_complexity Low_complexity 1 22 0 1714 147 23 0 chr6 25487272 25487531 -163792023 + AluSx SINE Alu 12 276 -36 187 219 0 0 chr6 25487891 25487932 -163791622 - MIR SINE MIR -110 152 112 2218 197 160 59 chr6 25488333 25489078 -163790476 + LTR1B LTR ERV1 1 820 -6 251 346 78 20 chr6 25489933 25490086 -163789468 + L2 LINE L2 3101 3262 -10 212 100 25 0 chr6 25492545 25492585 -163786969 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 290 315 27 36 chr6 25492781 25492892 -163786662 - L2 LINE L2 -18 3254 3145 310 380 76 9 chr6 25492946 25493170 -163786384 - L2 LINE L2 -339 2975 2737 2367 83 0 7 chr6 25493616 25493916 -163785638 + AluSc SINE Alu 1 298 -11 303 326 46 29 chr6 25495027 25495202 -163784352 + L3 LINE CR1 1195 1372 -205 2992 174 20 43 chr6 25498077 25498275 -163781279 - L1 LINE L1 -1346 4800 4599 2535 64 0 3 chr6 25498275 25498587 -163780967 - AluY SINE Alu 0 311 1 2992 174 20 43 chr6 25498587 25499087 -163780467 - L1 LINE L1 -1547 4599 4118 201 333 0 0 chr6 25499575 25499635 -163779919 - L2 LINE L2 -4 3309 3250 221 220 20 0 chr6 25499799 25499849 -163779705 + (TA)n Simple_repeat Simple_repeat 1 51 0 872 71 31 8 chr6 25500852 25500979 -163778575 - L1PA7 LINE L1 -2 6152 6023 1794 146 21 41 chr6 25501446 25501795 -163777759 + MLT1B LTR MaLR 1 344 -52 275 105 0 35 chr6 25501799 25501856 -163777698 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 349 75 88 19 chr6 25501864 25502024 -163777530 + (TA)n Simple_repeat Simple_repeat 1 171 0 298 36 72 66 chr6 25502037 25502204 -163777350 + (TA)n Simple_repeat Simple_repeat 2 169 0 389 109 44 77 chr6 25502205 25502461 -163777093 + (CTATA)n Simple_repeat Simple_repeat 1 247 0 43373 44 4 0 chr6 25504644 25510773 -163768781 - L1PA4 LINE L1 -6 6149 3 21 0 0 0 chr6 25510789 25510810 -163768744 + AT_rich Low_complexity Low_complexity 1 21 0 451 253 172 0 chr6 25511293 25511467 -163768087 - MLT1J1 LTR MaLR -234 212 9 293 68 23 0 chr6 25511602 25511646 -163767908 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 201 315 14 0 chr6 25511779 25511852 -163767702 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 1238 131 10 0 chr6 25511889 25512087 -163767467 + MER2 DNA MER2_type 1 200 -145 247 225 0 99 chr6 25512130 25512201 -163767353 + MER2 DNA MER2_type 278 341 -4 2047 300 40 36 chr6 25512273 25513401 -163766153 + L2 LINE L2 2175 3309 -4 207 194 0 0 chr6 25515090 25515126 -163764428 + MIR SINE MIR 156 191 -71 1955 125 21 0 chr6 25515189 25515468 -163764086 + AluSx SINE Alu 1 285 -27 355 353 15 8 chr6 25515602 25515735 -163763819 - L3 LINE CR1 -54 1523 1390 462 314 71 16 chr6 25515795 25516047 -163763507 + L2 LINE L2 1839 2104 -1210 27 49 0 0 chr6 25516221 25516262 -163763292 + AT_rich Low_complexity Low_complexity 1 41 0 378 310 39 47 chr6 25517762 25518017 -163761537 - L1MC4 LINE L1 -1 8041 7789 2265 103 0 38 chr6 25518080 25518400 -163761154 - AluSg SINE Alu -2 308 1 24 0 0 0 chr6 25518408 25518432 -163761122 + AT_rich Low_complexity Low_complexity 1 24 0 671 236 82 55 chr6 25518436 25518766 -163760788 - L1MC4 LINE L1 -491 7551 7213 1424 157 49 66 chr6 25518800 25519086 -163760468 + AluJo SINE Alu 2 282 -30 354 98 0 0 chr6 25519093 25519144 -163760410 + (GAAA)n Simple_repeat Simple_repeat 3 53 0 25 31 0 0 chr6 25519174 25519206 -163760348 + AT_rich Low_complexity Low_complexity 1 32 0 1987 152 3 0 chr6 25520545 25520842 -163758712 + AluSx SINE Alu 1 298 -14 5678 129 22 8 chr6 25520861 25522729 -163756825 - L1PA16 LINE L1 -9 6157 4270 1082 258 119 76 chr6 25525626 25526191 -163753363 - MLT1G1 LTR MaLR -2 593 5 218 203 14 95 chr6 25526195 25526269 -163753285 - MIR SINE MIR -130 132 65 3222 82 30 7 chr6 25526338 25526778 -163752776 + MLT2A2 LTR ERVL 2 451 -2 1785 234 98 57 chr6 25527868 25528647 -163750907 - L1ME2 LINE L1 -19 6145 5335 1309 229 45 63 chr6 25528647 25529212 -163750342 - MLT1D LTR MaLR -1 496 1 1018 266 96 24 chr6 25529253 25529880 -163749674 - L1ME2 LINE L1 -985 5161 4490 * 1088 262 27 40 chr6 25529877 25530354 -163749200 - L1ME2 LINE L1 -2060 4086 3616 349 248 73 41 chr6 25530386 25530604 -163748950 - L1ME2 LINE L1 -3069 3077 2853 426 180 174 23 chr6 25530733 25530905 -163748649 - MER33 DNA MER1_type -115 209 12 1173 65 0 0 chr6 25531199 25531352 -163748202 - AluY SINE Alu -5 306 154 2142 166 35 39 chr6 25532162 25532359 -163747195 + Tigger2a DNA MER2_type 2 198 -2510 1660 162 32 23 chr6 25532359 25532668 -163746886 - AluJb SINE Alu 0 312 1 2142 166 35 39 chr6 25532668 25532905 -163746649 + Tigger2a DNA MER2_type 198 434 0 193 244 81 70 chr6 25533012 25533177 -163746377 + MIR SINE MIR 45 212 -50 23 0 0 0 chr6 25533445 25533468 -163746086 + AT_rich Low_complexity Low_complexity 1 23 0 183 235 0 0 chr6 25533477 25533528 -163746026 + (TA)n Simple_repeat Simple_repeat 1 51 0 250 214 24 0 chr6 25534663 25534747 -163744807 + (TA)n Simple_repeat Simple_repeat 1 86 0 686 309 44 12 chr6 25535294 25535546 -163744008 - MIR SINE MIR 0 262 3 301 322 46 0 chr6 25535961 25536048 -163743506 + L2 LINE L2 3170 3260 -12 217 0 61 0 chr6 25536171 25536204 -163743350 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1704 150 28 7 chr6 25536212 25536498 -163743056 + AluJb SINE Alu 1 292 -20 1344 255 101 17 chr6 25537821 25538287 -163741267 + MLT1D LTR MaLR 1 505 0 183 80 0 0 chr6 25538428 25538453 -163741101 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr6 25538892 25538916 -163740638 + AT_rich Low_complexity Low_complexity 1 24 0 1123 203 21 0 chr6 25538980 25539221 -163740333 - Tigger6a DNA MER2_type 0 1083 838 623 208 0 0 chr6 25539229 25539349 -163740205 + AluJo SINE Alu 1 120 -192 641 195 16 20 chr6 25539349 25539805 -163739749 + GA-rich Low_complexity Low_complexity 1 454 0 664 218 170 0 chr6 25539807 25539954 -163739600 + AluJo SINE Alu 129 300 -12 3440 213 24 33 chr6 25539958 25540799 -163738755 - Tigger6a DNA MER2_type -250 833 1 22 0 0 0 chr6 25541721 25541743 -163737811 + AT_rich Low_complexity Low_complexity 1 22 0 24 91 0 0 chr6 25541978 25542044 -163737510 + AT_rich Low_complexity Low_complexity 1 66 0 401 144 11 22 chr6 25542061 25542151 -163737403 - L1MA6 LINE L1 -5 6295 6207 289 339 85 21 chr6 25543021 25543257 -163736297 - MIR SINE MIR 0 262 12 1031 153 23 0 chr6 25544472 25544648 -163734906 - L1MB1 LINE L1 -330 5838 5659 692 158 0 0 chr6 25544650 25544764 -163734790 + L1MB1 LINE L1 5816 5929 -239 2238 126 14 6 chr6 25544778 25545142 -163734412 - L1PB1 LINE L1 -1 6150 5784 214 200 0 0 chr6 25545143 25545183 -163734371 + (TA)n Simple_repeat Simple_repeat 2 41 0 275 284 23 0 chr6 25545183 25545271 -163734283 + L1MC4 LINE L1 6614 6703 -1339 244 260 0 62 chr6 25545293 25545389 -163734165 + L1MC4 LINE L1 6614 6703 -1339 * 279 250 0 22 chr6 25545341 25545433 -163734121 - L1MC4 LINE L1 -1339 6703 6614 227 271 0 62 chr6 25545381 25545477 -163734077 + L1MC4 LINE L1 6614 6703 -1339 * 232 289 11 22 chr6 25545450 25545540 -163734014 - L1MC4 LINE L1 -1340 6702 6614 185 309 9 45 chr6 25545682 25545792 -163733762 - L2 LINE L2 -862 2452 2347 180 0 0 0 chr6 25546382 25546402 -163733152 + (A)n Simple_repeat Simple_repeat 1 20 0 2111 108 7 0 chr6 25546637 25546915 -163732639 + AluSx SINE Alu 1 280 -32 258 32 0 0 chr6 25546915 25546946 -163732608 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 207 0 0 0 chr6 25547282 25547305 -163732249 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 272 293 55 67 chr6 25547624 25547788 -163731766 - MIR SINE MIR -81 181 20 360 0 0 0 chr6 25547876 25547916 -163731638 + (CA)n Simple_repeat Simple_repeat 2 41 0 1079 132 17 31 chr6 25548497 25548714 -163730840 - MLT1C LTR MaLR 0 467 197 24 0 0 0 chr6 25550095 25550119 -163729435 + AT_rich Low_complexity Low_complexity 1 24 0 245 29 29 0 chr6 25550593 25550627 -163728927 + (TA)n Simple_repeat Simple_repeat 1 35 0 198 328 109 68 chr6 25550823 25551015 -163728539 - L3b LINE CR1 -17 1566 1367 807 220 16 21 chr6 25552979 25553170 -163726384 + MER97c DNA MER1_type? 1 190 -900 23 0 0 0 chr6 25553777 25553800 -163725754 + AT_rich Low_complexity Low_complexity 1 23 0 455 323 35 39 chr6 25553863 25554092 -163725462 + MIR SINE MIR 18 245 -17 202 303 0 34 chr6 25554638 25554727 -163724827 + (TTGGGG)n Simple_repeat Simple_repeat 2 87 0 2111 113 26 3 chr6 25556460 25556762 -163722792 - AluSx SINE Alu -3 309 1 180 0 0 0 chr6 25557277 25557297 -163722257 + (A)n Simple_repeat Simple_repeat 1 20 0 314 329 64 66 chr6 25557298 25557555 -163721999 - L2 LINE L2 -303 3010 2757 633 254 77 0 chr6 25557637 25557818 -163721736 - MER58A DNA MER1_type -29 195 1 519 235 26 91 chr6 25557963 25558193 -163721361 + L1M4 LINE L1 3926 4140 -2006 2606 243 125 35 chr6 25558357 25559519 -163720035 + L1M4 LINE L1 3552 4817 -1329 1516 304 48 35 chr6 25559573 25560444 -163719110 + L2 LINE L2 2416 3313 0 891 268 92 42 chr6 25561433 25561813 -163717741 + L3b LINE CR1 1104 1502 -81 30904 98 9 44 chr6 25564960 25568219 -163711335 + L1PA7 LINE L1 371 3486 -2983 397 55 36 0 chr6 25568219 25568274 -163711280 + Alu SINE Alu 242 298 -3 30904 98 9 44 chr6 25568274 25571154 -163708400 + L1PA7 LINE L1 3486 6465 -4 243 335 40 29 chr6 25571161 25571334 -163708220 + L3b LINE CR1 1177 1351 -232 9160 201 31 21 chr6 25572031 25572738 -163706816 - L1PA16 LINE L1 -1 6868 6169 1434 193 20 27 chr6 25572738 25573068 -163706486 - AluJb SINE Alu 0 312 1 9160 201 31 21 chr6 25573068 25575046 -163704508 - L1PA16 LINE L1 -700 6169 4133 2212 140 31 0 chr6 25575046 25575397 -163704157 + THE1B LTR MaLR 3 364 0 9160 201 31 21 chr6 25575397 25576003 -163703551 - L1PA16 LINE L1 -2736 4133 3534 6892 190 23 11 chr6 25576009 25577911 -163701643 - L1PA16 LINE L1 -5172 1677 90 2198 127 0 0 chr6 25577911 25578210 -163701344 + AluSx SINE Alu 1 299 -13 6892 190 23 11 chr6 25578210 25578301 -163701253 - L1PA16 LINE L1 -6759 90 2 51 42 0 0 chr6 25578584 25578656 -163700898 + AT_rich Low_complexity Low_complexity 1 72 0 24 32 0 0 chr6 25578806 25578837 -163700717 + AT_rich Low_complexity Low_complexity 1 31 0 256 292 193 12 chr6 25579235 25579406 -163700148 + MIR SINE MIR 32 233 -29 723 310 76 17 chr6 25579477 25579899 -163699655 + LTR16A LTR ERVL 2 448 -2 23 33 0 0 chr6 25581260 25581290 -163698264 + AT_rich Low_complexity Low_complexity 1 30 0 1591 306 113 7 chr6 25581463 25582179 -163697375 + L2 LINE L2 2258 3064 -249 322 251 6 108 chr6 25582179 25582346 -163697208 - MLT1J1 LTR MaLR 0 446 297 344 255 144 80 chr6 25582382 25582570 -163696984 + MER58C DNA MER1_type 1 200 -15 315 273 78 0 chr6 25582697 25582774 -163696780 - MER58 DNA MER1_type -2337 83 1 186 133 0 0 chr6 25582811 25582841 -163696713 + (T)n Simple_repeat Simple_repeat 1 30 0 339 150 0 0 chr6 25582841 25582901 -163696653 + (TCCC)n Simple_repeat Simple_repeat 3 62 0 1815 129 48 7 chr6 25582901 25583196 -163696358 - AluSx SINE Alu -5 307 1 294 346 49 25 chr6 25584141 25584303 -163695251 - L2 LINE L2 -1 3271 3106 220 193 147 55 chr6 25584361 25584470 -163695084 + MIR SINE MIR 51 169 -93 217 154 26 0 chr6 25584478 25584517 -163695037 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 1941 119 63 0 chr6 25585454 25585740 -163693814 + AluSq SINE Alu 1 304 -9 2185 66 16 53 chr6 25585950 25586270 -163693284 + AluSc SINE Alu 1 308 -1 1934 98 4 23 chr6 25586508 25586773 -163692781 - AluSq SINE Alu -53 260 1 207 228 18 18 chr6 25587337 25587394 -163692160 + GA-rich Low_complexity Low_complexity 5 61 0 2427 54 0 7 chr6 25587720 25588014 -163691540 + AluY SINE Alu 1 292 -19 310 394 28 6 chr6 25588504 25588684 -163690870 - MIR3 SINE MIR -21 187 4 201 302 0 0 chr6 25589146 25589199 -163690355 + GA-rich Low_complexity Low_complexity 2 54 0 237 108 0 0 chr6 25590943 25590980 -163688574 + (TC)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr6 25590985 25591005 -163688549 + (CA)n Simple_repeat Simple_repeat 1 20 0 333 68 0 0 chr6 25591237 25591281 -163688273 + (CA)n Simple_repeat Simple_repeat 1 44 0 295 171 61 12 chr6 25591307 25591389 -163688165 + L1ME4a LINE L1 6023 6108 -13 2157 107 19 16 chr6 25592145 25592454 -163687100 - AluSx SINE Alu -2 310 1 25 51 0 0 chr6 25593534 25593573 -163685981 + AT_rich Low_complexity Low_complexity 1 39 0 373 276 110 7 chr6 25594976 25595121 -163684433 + L2 LINE L2 3154 3313 0 183 315 82 0 chr6 25596879 25596952 -163682602 + L2 LINE L2 3190 3268 -4 221 163 0 0 chr6 25597251 25597294 -163682260 + T-rich Low_complexity Low_complexity 1 43 0 1296 176 4 0 chr6 25597409 25597648 -163681906 - L1MB1 LINE L1 -3 6165 5926 2122 97 0 7 chr6 25597648 25597947 -163681607 + L1P5 LINE L1 5495 5791 -360 252 297 0 22 chr6 25597962 25598053 -163681501 + L1MC4 LINE L1 6614 6702 -1340 245 301 24 0 chr6 25598022 25598105 -163681449 - L1MC4 LINE L1 -1341 6701 6617 * 279 250 0 22 chr6 25598080 25598172 -163681382 + L1MC4 LINE L1 6614 6703 -1339 244 260 0 62 chr6 25598124 25598220 -163681334 - L1MC4 LINE L1 -1339 6703 6614 * 275 284 23 0 chr6 25598242 25598330 -163681224 - L1MC4 LINE L1 -1339 6703 6614 2251 124 14 6 chr6 25598369 25598733 -163680821 + L1PB1 LINE L1 5784 6150 -1 692 158 0 0 chr6 25598747 25598861 -163680693 - L1MB1 LINE L1 -239 5929 5816 1031 153 23 0 chr6 25598863 25599039 -163680515 + L1MB1 LINE L1 5659 5838 -330 289 339 85 21 chr6 25600254 25600490 -163679064 + MIR SINE MIR 12 262 0 401 144 11 22 chr6 25601384 25601474 -163678080 + L1MA6 LINE L1 6207 6295 -5 24 91 0 0 chr6 25601491 25601557 -163677997 + AT_rich Low_complexity Low_complexity 1 66 0 22 0 0 0 chr6 25601792 25601814 -163677740 + AT_rich Low_complexity Low_complexity 1 22 0 3372 213 24 37 chr6 25602736 25603580 -163675974 + Tigger6a DNA MER2_type 1 833 -250 664 218 170 0 chr6 25603584 25603731 -163675823 - AluJo SINE Alu -12 300 129 603 170 24 32 chr6 25603732 25604185 -163675369 + CT-rich Low_complexity Low_complexity 1 449 0 623 208 0 0 chr6 25604185 25604305 -163675249 - AluJo SINE Alu -192 120 1 1109 208 21 0 chr6 25604313 25604554 -163675000 + Tigger6a DNA MER2_type 838 1083 0 24 0 0 0 chr6 25604618 25604642 -163674912 + AT_rich Low_complexity Low_complexity 1 24 0 183 80 0 0 chr6 25605081 25605106 -163674448 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1334 258 99 15 chr6 25605247 25605713 -163673841 - MLT1D LTR MaLR 0 505 1 243 335 40 29 chr6 25607408 25607581 -163671973 - L3b LINE CR1 -232 1351 1177 30889 100 11 45 chr6 25607581 25610466 -163669088 - L1PA8 LINE L1 0 6487 3503 427 48 32 0 chr6 25610466 25610528 -163669026 - AluY SINE Alu -6 306 243 30889 100 11 45 chr6 25610528 25613781 -163665773 - L1PA8 LINE L1 -2984 3503 371 891 268 92 42 chr6 25616927 25617307 -163662247 - L3b LINE CR1 -81 1502 1104 1529 303 48 35 chr6 25618296 25619167 -163660387 - L2 LINE L2 0 3313 2416 1776 254 72 59 chr6 25619221 25620382 -163659172 - L1 LINE L1 -1329 4817 3552 477 252 50 64 chr6 25620546 25620764 -163658790 - L1M4 LINE L1 -2006 4140 3926 621 260 77 0 chr6 25620909 25621090 -163658464 + MER58A DNA MER1_type 1 195 -29 314 329 64 66 chr6 25621172 25621429 -163658125 + L2 LINE L2 2757 3010 -303 216 0 0 0 chr6 25621430 25621454 -163658100 + (T)n Simple_repeat Simple_repeat 1 24 0 2095 113 27 3 chr6 25621970 25622270 -163657284 + AluSx SINE Alu 1 307 -5 205 247 41 14 chr6 25623808 25623881 -163655673 + (CATA)n Simple_repeat Simple_repeat 2 76 0 202 303 0 34 chr6 25624003 25624092 -163655462 + (CCCCAA)n Simple_repeat Simple_repeat 2 87 0 463 323 35 39 chr6 25624638 25624867 -163654687 - MIR SINE MIR -17 245 18 23 0 0 0 chr6 25624930 25624953 -163654601 + AT_rich Low_complexity Low_complexity 1 23 0 810 220 16 21 chr6 25625560 25625751 -163653803 - MER97c DNA MER1_type? -900 190 1 245 29 29 0 chr6 25628101 25628135 -163651419 + (TA)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr6 25628613 25628633 -163650921 + (A)n Simple_repeat Simple_repeat 1 20 0 1065 132 17 31 chr6 25630015 25630232 -163649322 + MLT1C LTR MaLR 197 467 0 342 0 0 0 chr6 25630813 25630851 -163648703 + (TG)n Simple_repeat Simple_repeat 2 39 0 265 326 30 59 chr6 25630968 25631103 -163648451 + MIR SINE MIR 51 181 -81 207 0 0 0 chr6 25631422 25631445 -163648109 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 258 32 0 0 chr6 25631781 25631812 -163647742 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 2052 112 7 0 chr6 25631812 25632090 -163647464 - AluSx SINE Alu -32 280 1 216 0 0 0 chr6 25632325 25632349 -163647205 + (T)n Simple_repeat Simple_repeat 1 24 0 799 289 125 49 chr6 25632939 25633793 -163645761 + L2 LINE L2 2347 3251 -62 1789 170 0 3 chr6 25636098 25636387 -163643167 - AluJb SINE Alu -24 288 1 1940 191 45 16 chr6 25639461 25639902 -163639652 - L1 LINE L1 -1592 4554 4101 621 213 0 39 chr6 25639906 25640061 -163639493 - L1 LINE L1 -2133 4013 3865 213 260 65 98 chr6 25640900 25641023 -163638531 - MIR3 SINE MIR -26 182 64 1181 305 11 44 chr6 25641038 25641559 -163637995 + L1MC3 LINE L1 3 506 -5539 474 280 13 27 chr6 25641665 25641815 -163637739 + L1MC3 LINE L1 570 717 -5328 7678 241 65 21 chr6 25641825 25645268 -163634286 + L1MC3 LINE L1 2949 5821 -743 2857 179 67 123 chr6 25645267 25646320 -163633234 + L1MC3 LINE L1 7162 8155 -48 * 186 43 0 0 chr6 25647749 25647772 -163631782 + (GAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr6 25648512 25648533 -163631021 + AT_rich Low_complexity Low_complexity 1 21 0 232 353 44 73 chr6 25649668 25649804 -163629750 + MIR SINE MIR 20 151 -111 676 283 49 83 chr6 25651562 25651972 -163627582 + L2 LINE L2 2817 3212 -101 2315 264 50 14 chr6 25651977 25652224 -163627330 + L1M4 LINE L1 3038 3274 -2872 840 10 0 0 chr6 25652224 25652322 -163627232 + L1PA2 LINE L1 6058 6155 0 2315 264 50 14 chr6 25652322 25652945 -163626609 + L1M4 LINE L1 3274 3940 -2206 183 204 0 0 chr6 25652992 25653041 -163626513 + (AGTTG)n Simple_repeat Simple_repeat 5 53 0 2171 91 0 7 chr6 25653160 25653473 -163626081 - AluSq SINE Alu 0 314 4 249 139 28 14 chr6 25653665 25653737 -163625817 + (TA)n Simple_repeat Simple_repeat 1 73 0 839 241 18 5 chr6 25653744 25653968 -163625586 + L1M4 LINE L1 3964 4190 -1956 1123 306 46 22 chr6 25653981 25654625 -163624929 + L1MCb LINE L1 1476 2179 -4566 470 296 82 10 chr6 25655021 25655217 -163624337 - MLT1J1 LTR MaLR -13 433 224 256 213 16 0 chr6 25656220 25656281 -163623273 + (AATTG)n Simple_repeat Simple_repeat 4 65 0 190 231 88 55 chr6 25656814 25656905 -163622649 - MIR SINE MIR -5 257 164 1965 137 26 11 chr6 25656933 25657283 -163622271 + L1MA2 LINE L1 5942 6296 -8 1608 206 29 29 chr6 25657950 25658324 -163621230 + MLT1A2 LTR MaLR 1 374 0 439 280 68 39 chr6 25658577 25658856 -163620698 + MER96B DNA MER1_type? 131 417 0 644 264 77 40 chr6 25658955 25659254 -163620300 + L1M4 LINE L1 3528 3837 -2309 420 260 0 10 chr6 25659255 25659355 -163620199 + MLT1C LTR MaLR 369 467 0 3067 221 99 90 chr6 25659360 25660553 -163619001 + L1MC4a LINE L1 6604 7807 -1 283 312 0 11 chr6 25660658 25660751 -163618803 + CT-rich Low_complexity Low_complexity 4 95 0 903 131 0 0 chr6 25661365 25661495 -163618059 + AluJb SINE Alu 4 133 -179 831 201 6 17 chr6 25661530 25661704 -163617850 + AluJb SINE Alu 126 297 -15 220 286 57 38 chr6 25662420 25662525 -163617029 + L2 LINE L2 1843 1949 -1365 1352 243 30 35 chr6 25662690 25663094 -163616460 - MER74B LTR ERVL -10 612 211 328 170 0 0 chr6 25663133 25663186 -163616368 - MER74B LTR ERVL -569 53 1 285 395 32 16 chr6 25663277 25663530 -163616024 + L2 LINE L2 2292 2548 -766 233 29 0 29 chr6 25663823 25663858 -163615696 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 242 242 116 42 chr6 25664122 25664217 -163615337 + L2 LINE L2 3160 3261 -11 25 31 0 0 chr6 25665322 25665354 -163614200 + AT_rich Low_complexity Low_complexity 1 32 0 286 298 100 29 chr6 25665828 25666137 -163613417 + L1ME4a LINE L1 5578 5908 -213 3045 174 92 6 chr6 25666766 25666855 -163612699 + L1MB3 LINE L1 5476 5556 -627 2177 60 0 0 chr6 25666855 25667121 -163612433 + AluY SINE Alu 34 299 -12 3045 174 92 6 chr6 25667121 25667681 -163611873 + L1MB3 LINE L1 5556 6181 -2 269 302 108 52 chr6 25668155 25668367 -163611187 + MIR SINE MIR 8 231 -31 360 313 102 36 chr6 25668848 25669014 -163610540 + MIR3 SINE MIR 3 179 -29 493 287 52 11 chr6 25670166 25670340 -163609214 + MIR SINE MIR 11 191 -71 871 287 60 81 chr6 25670727 25671393 -163608161 + HAL1 LINE L1 622 1273 -1234 288 252 97 32 chr6 25671410 25671565 -163607989 + HAL1 LINE L1 1386 1550 -957 368 296 19 58 chr6 25671572 25671778 -163607776 + HAL1 LINE L1 1682 1879 -628 356 367 105 0 chr6 25671808 25672037 -163607517 + HAL1 LINE L1 1664 1916 -591 1031 277 178 30 chr6 25672114 25672886 -163606668 + HAL1b LINE L1 427 1312 -36 1583 113 0 0 chr6 25673184 25673396 -163606158 - AluSq SINE Alu -9 304 93 521 324 39 0 chr6 25674172 25674354 -163605200 + MIR SINE MIR 11 199 -63 239 347 32 40 chr6 25674541 25674665 -163604889 + MIR SINE MIR 19 141 -67 835 255 24 19 chr6 25676213 25676421 -163603133 - MER3 DNA MER1_type 0 209 1 1842 187 59 36 chr6 25676508 25676946 -163602608 + MLT1C LTR MaLR 5 452 -15 436 242 58 74 chr6 25677000 25677190 -163602364 - LTR33A LTR ERVL -52 471 285 453 282 132 38 chr6 25678038 25678251 -163601303 + MIR SINE MIR 13 245 -17 323 336 36 7 chr6 25678452 25678589 -163600965 - MIR SINE MIR -31 231 91 555 345 43 13 chr6 25678592 25678827 -163600727 + MIR SINE MIR 21 262 0 234 211 178 22 chr6 25678897 25678987 -163600567 - HSMAR2 DNA Mariner -573 729 626 249 284 134 0 chr6 25678987 25679054 -163600500 + L2 LINE L2 3170 3245 -27 352 310 62 0 chr6 25679701 25679814 -163599740 - MER94 DNA DNA -14 120 1 22 56 0 0 chr6 25680455 25680491 -163599063 + AT_rich Low_complexity Low_complexity 1 36 0 834 288 91 42 chr6 25681480 25681866 -163597688 + MLT1L LTR MaLR 1 405 -210 495 322 91 21 chr6 25681993 25682235 -163597319 + L2 LINE L2 2719 2977 -337 12931 141 53 43 chr6 25682363 25684512 -163595042 - Tigger1 DNA MER2_type -3 2415 238 1723 153 84 0 chr6 25684512 25684787 -163594767 + AluSq SINE Alu 1 298 -15 12931 141 53 43 chr6 25684787 25685003 -163594551 - Tigger1 DNA MER2_type -2180 238 26 326 230 119 48 chr6 25685043 25685169 -163594385 + L2 LINE L2 3179 3313 0 21 0 0 0 chr6 25685447 25685468 -163594086 + AT_rich Low_complexity Low_complexity 1 21 0 399 277 80 49 chr6 25687692 25687897 -163591657 - MIR SINE MIR -52 210 1 182 402 24 12 chr6 25687913 25688077 -163591477 - L2 LINE L2 -221 3051 2886 328 383 74 0 chr6 25688227 25688402 -163591152 - MIR SINE MIR -13 249 62 1713 52 0 0 chr6 25688604 25688815 -163590739 + L1PA3 LINE L1 5945 6155 0 3225 34 0 0 chr6 25688816 25689199 -163590355 + L1PA3 LINE L1 5770 6152 -3 2247 114 10 0 chr6 25689228 25689535 -163590019 + AluSp SINE Alu 3 312 -1 1076 217 26 92 chr6 25690309 25690700 -163588854 + MLT1A1 LTR MaLR 1 365 0 270 104 75 0 chr6 25691444 25691511 -163588043 + (TTATA)n Simple_repeat Simple_repeat 1 72 0 214 406 23 8 chr6 25692059 25692192 -163587362 + MIR SINE MIR 7 141 -121 496 357 61 54 chr6 25692327 25692840 -163586714 + L2 LINE L2 2746 3260 -12 180 0 0 0 chr6 25693163 25693183 -163586371 + (TG)n Simple_repeat Simple_repeat 2 21 0 1122 166 9 36 chr6 25693818 25694041 -163585513 + AluJb SINE Alu 86 302 -10 250 231 13 26 chr6 25694319 25694397 -163585157 + (CTA)n Simple_repeat Simple_repeat 1 77 0 341 93 19 0 chr6 25694437 25694491 -163585063 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 393 22 0 0 chr6 25694501 25694547 -163585007 + (TG)n Simple_repeat Simple_repeat 2 47 0 397 307 118 49 chr6 25694952 25695359 -163584195 + L1ME LINE L1 4799 5233 -913 330 271 157 65 chr6 25695503 25695886 -163583668 + L1ME LINE L1 5309 5727 -394 2615 141 70 2 chr6 25695961 25696415 -163583139 + MER31A LTR ERV1 1 485 0 23 0 0 0 chr6 25696974 25696997 -163582557 + AT_rich Low_complexity Low_complexity 1 23 0 284 306 159 14 chr6 25697599 25697745 -163581809 - MIR SINE MIR -61 147 33 481 328 97 41 chr6 25697961 25698446 -163581108 - L1ME4a LINE L1 -50 6071 5560 878 204 6 0 chr6 25699168 25699330 -163580224 - FRAM SINE Alu -12 164 2 449 238 46 66 chr6 25702106 25702354 -163577200 + L2 LINE L2 2778 3011 -302 28 61 0 0 chr6 25703391 25703440 -163576114 + AT_rich Low_complexity Low_complexity 1 49 0 204 40 0 0 chr6 25705923 25705948 -163573606 + (T)n Simple_repeat Simple_repeat 1 25 0 211 241 109 58 chr6 25707365 25707502 -163572052 - MIR SINE MIR 0 262 119 2419 50 0 54 chr6 25708181 25708498 -163571056 + AluY SINE Alu 1 300 -11 180 97 0 0 chr6 25708502 25708533 -163571021 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 932 202 6 0 chr6 25708557 25708730 -163570824 + AluJb SINE Alu 123 296 -16 2830 88 21 26 chr6 25708802 25709225 -163570329 + L1MA1 LINE L1 5873 6293 -9 37 23 0 0 chr6 25709226 25709270 -163570284 + AT_rich Low_complexity Low_complexity 1 44 0 14282 135 33 7 chr6 25709270 25711585 -163567969 - Tigger1 DNA MER2_type -14 2404 30 295 338 89 19 chr6 25711773 25712042 -163567512 - LTR16C LTR ERVL -14 477 190 274 271 128 60 chr6 25713355 25713488 -163566066 + MLT1J2 LTR MaLR 301 442 -8 2218 110 0 0 chr6 25713514 25713813 -163565741 - AluSg SINE Alu -11 299 1 778 304 148 25 chr6 25714118 25714591 -163564963 - LTR67 LTR ERVL -24 533 3 2245 71 4 0 chr6 25716856 25717137 -163562417 + AluY SINE Alu 5 286 -25 31 0 0 0 chr6 25717137 25717168 -163562386 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr6 25717677 25717700 -163561854 + AT_rich Low_complexity Low_complexity 1 23 0 514 199 43 43 chr6 25718031 25718172 -163561382 - L1MC1 LINE L1 0 6613 6473 1736 174 146 6 chr6 25718172 25718535 -163561019 - MSTA LTR MaLR 0 428 15 1853 210 78 0 chr6 25718542 25718980 -163560574 - L1MC1 LINE L1 -138 6475 6004 7971 221 50 62 chr6 25718982 25721038 -163558516 - L1MC1 LINE L1 -783 5643 3563 2075 140 21 48 chr6 25721038 25721410 -163558144 - THE1B LTR MaLR -2 362 1 7971 221 50 62 chr6 25721410 25723122 -163556432 - L1MC1 LINE L1 -2863 3563 1928 1973 129 45 3 chr6 25723122 25723408 -163556146 + AluSx SINE Alu 1 298 -14 7971 221 50 62 chr6 25723408 25723685 -163555869 - L1MC1 LINE L1 -4498 1928 1649 848 182 78 29 chr6 25723690 25723932 -163555622 - L1MC1 LINE L1 -4994 1432 1179 1974 238 56 55 chr6 25723959 25724179 -163555375 + L1MD2 LINE L1 5454 5672 -687 1950 136 158 13 chr6 25724179 25724553 -163555001 + MSTA LTR MaLR 1 428 0 1974 238 56 55 chr6 25724553 25725010 -163554544 + L1MD2 LINE L1 5672 6132 -227 182 88 0 29 chr6 25725042 25725076 -163554478 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 959 212 47 56 chr6 25725177 25725498 -163554056 + Charlie2 DNA MER1_type 1858 2175 -687 429 222 32 32 chr6 25725692 25725818 -163553736 + MLT1B LTR MaLR 1 126 -264 953 192 38 13 chr6 25725820 25726129 -163553425 - L1M3 LINE L1 -706 5474 5164 518 342 125 49 chr6 25726165 25726817 -163552737 - L2 LINE L2 -2 3270 2568 495 318 198 0 chr6 25726853 25727230 -163552324 + L2 LINE L2 2751 3215 -98 1955 157 0 10 chr6 25727738 25728044 -163551510 - AluSx SINE Alu -8 304 2 267 133 0 0 chr6 25729512 25729557 -163549997 + (TG)n Simple_repeat Simple_repeat 2 46 0 259 263 42 11 chr6 25729597 25729692 -163549862 - L1MEc LINE L1 -4687 1876 1779 382 310 210 5 chr6 25729693 25729893 -163549661 - L1MEc LINE L1 -4800 1584 1344 213 242 0 147 chr6 25730400 25730495 -163549059 - L2 LINE L2 -2 3270 3190 24 32 0 0 chr6 25730622 25730653 -163548901 + AT_rich Low_complexity Low_complexity 1 31 0 309 68 0 0 chr6 25732280 25732324 -163547230 + (CA)n Simple_repeat Simple_repeat 2 45 0 204 325 52 39 chr6 25732702 25732856 -163546698 - L2 LINE L2 -473 2841 2686 935 215 61 0 chr6 25734101 25734347 -163545207 - L1MD3 LINE L1 -9 7986 7726 243 215 81 0 chr6 25734348 25734416 -163545138 + L1MC4a LINE L1 7298 7363 -445 2322 132 11 21 chr6 25734430 25734809 -163544745 - THE1C LTR MaLR 0 375 1 9115 130 51 5 chr6 25734809 25736320 -163543234 - THE1C-int LTR MaLR 0 1580 1 1692 199 38 14 chr6 25736320 25736686 -163542868 - THE1C LTR MaLR 0 375 1 511 236 13 34 chr6 25736686 25736886 -163542668 + L1MC4 LINE L1 7359 7583 -251 537 248 89 32 chr6 25736960 25737117 -163542437 + FRAM SINE Alu 1 166 0 407 286 122 19 chr6 25737969 25738182 -163541372 - MIR SINE MIR 0 262 28 31 44 0 0 chr6 25738673 25738718 -163540836 + AT_rich Low_complexity Low_complexity 1 45 0 3710 170 16 40 chr6 25738838 25739628 -163539926 - L1MC1 LINE L1 -8 6325 5555 250 373 27 27 chr6 25739754 25739864 -163539690 + MER5B DNA MER1_type 69 178 0 3808 156 19 33 chr6 25740505 25741237 -163538317 + MER50 LTR ERV1 1 722 -12 307 338 56 6 chr6 25741284 25741444 -163538110 + LTR16B LTR ERVL 137 304 -160 3120 151 24 6 chr6 25741454 25741990 -163537564 + MER41C LTR ERV1 9 554 0 3684 144 14 65 chr6 25743336 25744064 -163535490 - LTR8 LTR ERV1 0 691 1 385 280 80 0 chr6 25744141 25744266 -163535288 - MER5A DNA MER1_type 0 189 55 237 227 45 91 chr6 25744387 25744475 -163535079 - MER5A DNA MER1_type -102 87 4 400 280 19 19 chr6 25746426 25746533 -163533021 - L2 LINE L2 -12 3301 3195 225 94 0 0 chr6 25746935 25746967 -163532587 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 443 274 98 7 chr6 25747169 25747322 -163532232 - MIR3 SINE MIR -12 196 30 347 314 29 40 chr6 25748484 25748659 -163530895 - MLT1K LTR MaLR -284 304 132 617 222 72 75 chr6 25748787 25749121 -163530433 + MER57A LTR ERV1 68 400 -3 210 309 170 11 chr6 25749859 25749953 -163529601 + MIR3 SINE MIR 5 113 -95 24 0 0 0 chr6 25750575 25750599 -163528955 + AT_rich Low_complexity Low_complexity 1 24 0 241 244 49 130 chr6 25750772 25750895 -163528659 - L2 LINE L2 0 3313 3201 25 31 0 0 chr6 25752325 25752357 -163527197 + AT_rich Low_complexity Low_complexity 1 32 0 1955 167 37 42 chr6 25752440 25752802 -163526752 + MSTB1 LTR MaLR 1 362 -70 2502 57 0 0 chr6 25752802 25753098 -163526456 - AluY SINE Alu -15 296 1 1955 167 37 42 chr6 25753098 25753165 -163526389 + MSTB1 LTR MaLR 362 428 -4 370 240 29 19 chr6 25753614 25753718 -163525836 - MLT1J2 LTR MaLR -287 163 59 1812 144 11 7 chr6 25753753 25754037 -163525517 - AluJb SINE Alu -27 285 1 293 241 88 44 chr6 25754829 25754966 -163524588 - MLT1J LTR MaLR -37 474 332 353 336 33 56 chr6 25755377 25755591 -163523963 - L2 LINE L2 -188 3084 2876 183 311 149 0 chr6 25755623 25755697 -163523857 - L2 LINE L2 -435 2879 2795 2150 122 0 0 chr6 25756404 25756691 -163522863 - AluSx SINE Alu -25 287 1 1237 163 5 0 chr6 25757002 25757204 -163522350 - MER2 DNA MER2_type -135 210 8 180 0 0 0 chr6 25758050 25758070 -163521484 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 26 30 0 0 chr6 25758234 25758267 -163521287 + AT_rich Low_complexity Low_complexity 1 33 0 697 320 34 6 chr6 25758423 25758601 -163520953 - MER91A DNA MER1_type -13 183 1 246 32 0 0 chr6 25758659 25758690 -163520864 + (TTG)n Simple_repeat Simple_repeat 2 32 0 223 350 55 38 chr6 25758933 25759116 -163520438 - MIR SINE MIR -48 214 29 917 286 54 60 chr6 25759219 25759891 -163519663 - L2 LINE L2 -4 3309 2626 221 303 26 13 chr6 25759919 25759995 -163519559 - L2 LINE L2 -782 2532 2456 22 0 0 0 chr6 25760401 25760423 -163519131 + AT_rich Low_complexity Low_complexity 1 22 0 285 344 11 0 chr6 25760816 25760909 -163518645 + MIR SINE MIR 168 261 -1 679 202 0 0 chr6 25761061 25761175 -163518379 - MER81 DNA DNA 0 114 1 1055 291 8 16 chr6 25761615 25761997 -163517557 + L1ME1 LINE L1 5771 6149 -17 789 183 0 0 chr6 25762325 25762478 -163517076 + (CA)n Simple_repeat Simple_repeat 1 153 0 1464 234 24 33 chr6 25762486 25763043 -163516511 - L1MC/D LINE L1 -686 5673 5127 22 56 0 0 chr6 25763338 25763374 -163516180 + AT_rich Low_complexity Low_complexity 1 36 0 244 321 30 30 chr6 25764341 25764475 -163515079 + MIR SINE MIR 123 256 -6 22 35 0 0 chr6 25764895 25764924 -163514630 + AT_rich Low_complexity Low_complexity 1 29 0 1759 150 60 119 chr6 25765747 25765967 -163513587 + MSTB LTR MaLR 2 183 -243 2063 109 7 0 chr6 25765967 25766241 -163513313 - AluSq SINE Alu -37 276 1 1759 150 60 119 chr6 25766241 25766472 -163513082 + MSTB LTR MaLR 183 426 0 795 309 153 15 chr6 25766841 25767461 -163512093 + L2 LINE L2 2599 3308 -5 213 362 62 45 chr6 25767660 25768063 -163511491 + L2 LINE L2 1530 1939 -1375 379 323 67 27 chr6 25769055 25769352 -163510202 + L1MC/D LINE L1 5445 5753 -2055 701 262 99 4 chr6 25769721 25769954 -163509600 - MIR SINE MIR 0 262 8 198 0 0 0 chr6 25771638 25771660 -163507894 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1899 130 7 4 chr6 25771973 25772249 -163507305 + AluSg SINE Alu 1 277 -33 243 0 0 0 chr6 25772253 25772280 -163507274 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr6 25772333 25772357 -163507197 + AT_rich Low_complexity Low_complexity 1 24 0 1695 183 94 40 chr6 25772688 25773021 -163506533 + MSTB LTR MaLR 1 361 -65 2385 100 6 0 chr6 25773021 25773332 -163506222 - AluSq SINE Alu 0 313 1 1695 183 94 40 chr6 25773332 25773402 -163506152 + MSTB LTR MaLR 361 426 0 343 310 82 35 chr6 25774417 25774672 -163504882 - LTR16A LTR ERVL -159 291 25 2069 108 0 7 chr6 25774789 25775077 -163504477 - AluSc SINE Alu -23 286 1 354 254 28 56 chr6 25775469 25775611 -163503943 - HERV16 LTR ERVL -809 4845 4708 570 293 142 21 chr6 25775660 25775998 -163503556 - HERV16 LTR ERVL -1103 4661 4283 341 337 50 44 chr6 25776029 25776766 -163502788 - HERV16 LTR ERVL -1288 4197 3440 344 328 42 32 chr6 25776968 25777159 -163502395 - HERV16 LTR ERVL -1905 3091 2937 963 299 22 29 chr6 25777268 25777972 -163501582 - HERV16 LTR ERVL -2628 2368 1597 3103 46 0 10 chr6 25777989 25778377 -163501177 - L1PA7 LINE L1 0 6154 5771 3710 53 25 0 chr6 25778789 25779261 -163500293 + L1PA5 LINE L1 5669 6152 -2 1177 289 65 37 chr6 25779338 25779934 -163499620 - HERV16 LTR ERVL -4056 940 328 843 337 90 3 chr6 25780235 25780624 -163498930 - LTR16A LTR ERVL -10 440 18 1488 174 0 0 chr6 25781068 25781326 -163498228 - Tigger3(Golem) DNA MER2_type 0 3038 2781 653 206 76 0 chr6 25781323 25781454 -163498100 - Tigger3(Golem) DNA MER2_type -2887 142 2 * 1743 213 3 14 chr6 25782202 25782573 -163496981 + MER21B LTR ERV1 1 454 -477 2002 147 27 51 chr6 25782585 25782994 -163496560 - MSTB1 LTR MaLR -18 414 16 1420 224 75 36 chr6 25782974 25783416 -163496138 + MER21B LTR ERV1 354 812 -51 * 333 47 0 0 chr6 25783750 25783793 -163495761 + (CA)n Simple_repeat Simple_repeat 1 43 0 188 167 21 0 chr6 25783794 25783842 -163495712 + CT-rich Low_complexity Low_complexity 1 49 0 4920 232 67 24 chr6 25783855 25786831 -163492723 + L1MC2 LINE L1 1435 4633 -1793 749 238 162 15 chr6 25786833 25787163 -163492391 - MSTB2 LTR MaLR 0 396 1 4041 178 45 78 chr6 25787169 25787343 -163492211 + L1MC2 LINE L1 5407 5585 -1039 1901 169 0 7 chr6 25787343 25787639 -163491915 - AluSx SINE Alu -18 294 1 4041 178 45 78 chr6 25787639 25787938 -163491616 + L1MC2 LINE L1 5585 5892 -732 1042 169 6 12 chr6 25787938 25788104 -163491450 - FAM SINE Alu -7 168 4 4041 178 45 78 chr6 25788104 25788259 -163491295 + L1MC2 LINE L1 5892 6051 -573 2415 51 0 3 chr6 25788259 25788553 -163491001 - AluY SINE Alu -18 293 1 4041 178 45 78 chr6 25788553 25788915 -163490639 + L1MC2 LINE L1 6051 6373 -251 2236 114 0 3 chr6 25788915 25789222 -163490332 - AluSx SINE Alu 0 312 7 4041 178 45 78 chr6 25789222 25789455 -163490099 + L1MC2 LINE L1 6373 6612 -12 983 256 122 12 chr6 25793574 25793894 -163485660 - MER69 DNA AcHobo -2160 366 12 559 298 154 41 chr6 25794702 25794849 -163484705 - L2 LINE L2 -4 3309 3180 2583 70 38 5 chr6 25794849 25795219 -163484335 + L1PA7 LINE L1 5773 6154 0 559 298 154 41 chr6 25795219 25795596 -163483958 - L2 LINE L2 -133 3180 2713 1465 158 98 21 chr6 25795596 25795881 -163483673 - AluJo SINE Alu -5 307 1 559 298 154 41 chr6 25795881 25795931 -163483623 - L2 LINE L2 -600 2713 2670 186 43 0 0 chr6 25796655 25796678 -163482876 + (TG)n Simple_repeat Simple_repeat 2 24 0 26 50 0 0 chr6 25798222 25798262 -163481292 + AT_rich Low_complexity Low_complexity 1 40 0 2387 61 3 0 chr6 25798652 25798946 -163480608 - AluY SINE Alu -16 295 1 226 350 94 33 chr6 25799180 25799360 -163480194 + L3b LINE CR1 1391 1581 -2 180 171 171 57 chr6 25800032 25800102 -163479452 - MIR SINE MIR -31 231 154 250 250 0 0 chr6 25800543 25800603 -163478951 + GA-rich Low_complexity Low_complexity 3 62 0 336 102 0 0 chr6 25800603 25800652 -163478902 + (GA)n Simple_repeat Simple_repeat 2 50 0 * 854 123 0 34 chr6 25800641 25800820 -163478734 + (GGGAA)n Simple_repeat Simple_repeat 5 177 0 14226 62 6 1 chr6 25801009 25803660 -163475894 + L1PA5 LINE L1 3494 6148 -6 22 35 0 0 chr6 25803740 25803769 -163475785 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 25804263 25804284 -163475270 + GC_rich Low_complexity Low_complexity 1 21 0 621 157 0 0 chr6 25804473 25804588 -163474966 + GA-rich Low_complexity Low_complexity 2 116 0 265 319 15 15 chr6 25804634 25804769 -163474785 + L1ME LINE L1 352 486 -5886 1516 270 55 50 chr6 25804786 25804839 -163474715 + L1ME LINE L1 415 466 -5906 1278 228 103 36 chr6 25804839 25805277 -163474277 + MLT1C LTR MaLR 1 467 0 1516 270 55 50 chr6 25805277 25806037 -163473517 + L1ME LINE L1 466 1232 -5140 372 270 43 10 chr6 25806034 25806290 -163473264 + L1ME LINE L1 1174 1581 -4942 * 1358 226 60 70 chr6 25806291 25806750 -163472804 - L1MCc LINE L1 -1484 5457 5004 1720 160 20 36 chr6 25806750 25807056 -163472498 + AluJb SINE Alu 1 301 -11 1358 226 60 70 chr6 25807056 25807194 -163472360 - L1MCc LINE L1 -1937 5004 4866 1428 202 33 23 chr6 25807201 25807508 -163472046 + AluJb SINE Alu 1 310 -2 1066 143 0 8 chr6 25807512 25807874 -163471680 + (GGAA)n Simple_repeat Simple_repeat 1 360 0 1881 264 74 26 chr6 25807910 25808574 -163470980 - L1MCc LINE L1 -2085 4856 4116 1688 171 77 12 chr6 25808574 25808901 -163470653 - MER7A DNA MER2_type 0 346 1 1881 264 74 26 chr6 25808901 25809340 -163470214 - L1MCc LINE L1 -2825 4116 3700 236 212 15 0 chr6 25809411 25809477 -163470077 + (TA)n Simple_repeat Simple_repeat 2 68 0 446 105 13 0 chr6 25809484 25809560 -163469994 + L1MA9 LINE L1 6231 6307 -5 403 304 60 0 chr6 25809577 25809761 -163469793 - L1MCc LINE L1 -3317 3624 3430 1415 263 87 20 chr6 25809775 25810640 -163468914 - L1MCc LINE L1 -4681 2191 795 1713 183 38 9 chr6 25810729 25811074 -163468480 + MLT1A1 LTR MaLR 11 365 0 1157 170 59 0 chr6 25811810 25812063 -163467491 - L1MA7 LINE L1 -26 6265 5998 772 292 85 8 chr6 25812174 25812564 -163466990 - L1MCc LINE L1 -6000 423 4 301 378 0 0 chr6 25812695 25812814 -163466740 - MLT1I LTR MaLR -89 320 202 470 314 88 49 chr6 25813158 25813610 -163465944 + L3b LINE CR1 1105 1574 -9 240 219 0 27 chr6 25813987 25814024 -163465530 + (TATATG)n Simple_repeat Simple_repeat 6 42 -34 1921 190 3 0 chr6 25814024 25814371 -163465183 - MER7A DNA MER2_type 0 346 1 240 219 0 27 chr6 25814371 25814406 -163465148 + (TATATG)n Simple_repeat Simple_repeat 42 76 0 21 0 0 0 chr6 25815356 25815377 -163464177 + AT_rich Low_complexity Low_complexity 1 21 0 1289 299 42 28 chr6 25815979 25816630 -163462924 - Charlie7 DNA MER1_type -1889 723 64 30 0 0 0 chr6 25817723 25817753 -163461801 + AT_rich Low_complexity Low_complexity 1 30 0 1994 176 0 0 chr6 25820587 25820899 -163458655 - AluJb SINE Alu 0 312 1 829 360 48 12 chr6 25821511 25821930 -163457624 - MLT2E LTR ERVL -192 436 3 5471 284 55 37 chr6 25822199 25823954 -163455600 - ERVL LTR ERVL -387 5377 3571 3359 98 4 2 chr6 25823954 25824404 -163455150 - MLT2A2 LTR ERVL 0 453 3 5471 284 55 37 chr6 25824404 25824920 -163454634 - ERVL LTR ERVL -2193 3571 3066 1485 283 52 11 chr6 25825045 25825586 -163453968 - ERVL LTR ERVL -2857 2907 2345 207 263 12 50 chr6 25825883 25825963 -163453591 + L2 LINE L2 3232 3308 -5 468 229 57 8 chr6 25826319 25826441 -163453113 + MER94 DNA DNA 2 129 -5 24 0 0 0 chr6 25828235 25828259 -163451295 + AT_rich Low_complexity Low_complexity 1 24 0 529 231 33 0 chr6 25828378 25828499 -163451055 - L1MC4a LINE L1 -992 6816 6692 180 0 0 0 chr6 25828652 25828672 -163450882 + (T)n Simple_repeat Simple_repeat 1 20 0 1866 124 8 0 chr6 25828672 25828931 -163450623 - AluSq SINE Alu -50 263 3 1051 311 125 22 chr6 25831386 25831985 -163447569 + MLT2F LTR ERVL 3 663 0 258 32 0 0 chr6 25832749 25832780 -163446774 + (TG)n Simple_repeat Simple_repeat 1 31 0 207 88 0 0 chr6 25834370 25834404 -163445150 + (GA)n Simple_repeat Simple_repeat 1 34 0 275 289 32 90 chr6 25835849 25836005 -163443549 + MIR SINE MIR 34 180 -82 852 162 11 76 chr6 25837833 25838018 -163441536 + MLT1C LTR MaLR 3 175 -292 958 141 0 12 chr6 25838033 25838203 -163441351 + L1M2 LINE L1 2188 2355 -4494 908 202 27 11 chr6 25838265 25838453 -163441101 + MLT1C LTR MaLR 276 466 -1 221 375 73 0 chr6 25838694 25838790 -163440764 + L2 LINE L2 3125 3227 -45 201 196 0 0 chr6 25841693 25841744 -163437810 + (CA)n Simple_repeat Simple_repeat 1 51 0 236 244 0 0 chr6 25841892 25841937 -163437617 + MER5B DNA MER1_type 6 50 -128 924 78 0 0 chr6 25842059 25842174 -163437380 + AluY SINE Alu 168 282 -29 258 56 0 0 chr6 25842174 25842210 -163437344 + (CAAAC)n Simple_repeat Simple_repeat 2 37 0 379 252 0 59 chr6 25842255 25842374 -163437180 + MER5B DNA MER1_type 60 171 -7 222 350 20 10 chr6 25842387 25842487 -163437067 + MIR SINE MIR 118 218 -44 33 0 0 0 chr6 25843009 25843042 -163436512 + AT_rich Low_complexity Low_complexity 1 33 0 452 269 81 12 chr6 25843237 25843397 -163436157 + MIR3 SINE MIR 37 207 -1 243 192 67 29 chr6 25844242 25844346 -163435208 + HAL1 LINE L1 46 153 -2354 1278 106 0 0 chr6 25844527 25844697 -163434857 + AluSq SINE Alu 1 170 -143 288 0 0 0 chr6 25845229 25845261 -163434293 + (TA)n Simple_repeat Simple_repeat 2 33 0 614 152 9 0 chr6 25845261 25845366 -163434188 - AluSg/x SINE Alu -12 298 193 1822 131 4 4 chr6 25845627 25845887 -163433667 - AluSq SINE Alu -53 260 1 273 312 9 37 chr6 25845961 25846070 -163433484 - MER5B DNA MER1_type -71 107 2 261 213 160 0 chr6 25846762 25846856 -163432698 + L1MC/D LINE L1 5665 5773 -2035 24 32 0 0 chr6 25847102 25847133 -163432421 + AT_rich Low_complexity Low_complexity 1 31 0 4256 218 62 46 chr6 25848481 25849228 -163430326 - L1MC1 LINE L1 -18 6595 5862 6838 59 8 3 chr6 25849228 25850626 -163428928 + L1PA5 LINE L1 4748 6149 -5 4256 218 62 46 chr6 25850626 25850730 -163428824 - L1MC1 LINE L1 -751 5862 5761 2440 86 53 0 chr6 25850730 25851067 -163428487 + THE1A LTR MaLR 1 355 0 4256 218 62 46 chr6 25851067 25852840 -163426714 - L1MC1 LINE L1 -852 5761 3854 1025 161 6 11 chr6 25852841 25853015 -163426539 - MER6B DNA MER2_type 0 210 38 3782 220 60 26 chr6 25853024 25854766 -163424788 - L1MC1 LINE L1 -2592 3834 2036 2013 168 24 63 chr6 25854778 25855188 -163424366 - MSTB LTR MaLR -32 394 1 8404 180 17 25 chr6 25855188 25856852 -163422702 - MSTB-int LTR MaLR 0 1651 1 2382 174 21 5 chr6 25856852 25857271 -163422283 - MSTB LTR MaLR 0 426 1 7036 190 46 30 chr6 25857272 25858631 -163420923 - L1MC1 LINE L1 -4399 2027 538 207 0 0 0 chr6 25858631 25858654 -163420900 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7036 190 46 30 chr6 25858654 25859182 -163420372 - L1MC1 LINE L1 -5888 538 20 38 22 0 0 chr6 25859577 25859622 -163419932 + AT_rich Low_complexity Low_complexity 1 45 0 281 330 25 106 chr6 25859718 25859954 -163419600 + MIR SINE MIR 46 262 0 238 337 102 10 chr6 25860266 25860364 -163419190 + MIR SINE MIR 19 125 -83 1776 175 75 0 chr6 25860373 25860693 -163418861 - MER7A DNA MER2_type -2 344 3 2420 34 41 0 chr6 25861080 25861374 -163418180 + AluY SINE Alu 1 306 -5 25 75 0 0 chr6 25861481 25861534 -163418020 + AT_rich Low_complexity Low_complexity 1 53 0 237 356 44 0 chr6 25862756 25862846 -163416708 + MIR SINE MIR 22 115 -93 207 0 0 0 chr6 25863370 25863393 -163416161 + (TA)n Simple_repeat Simple_repeat 2 24 0 318 242 50 61 chr6 25863873 25863972 -163415582 + LTR67 LTR ERVL 419 516 -41 1630 152 105 31 chr6 25864814 25865064 -163414490 - MER7A DNA MER2_type -2693 345 66 2246 127 0 0 chr6 25865064 25865371 -163414183 - AluSq SINE Alu -6 307 1 1630 152 105 31 chr6 25865371 25865443 -163414111 - MER7A DNA MER2_type -2972 66 1 1797 126 35 53 chr6 25867439 25867757 -163411797 + AluSx SINE Alu 1 312 0 2039 194 2 37 chr6 25867865 25868273 -163411281 - MSTD LTR MaLR 0 396 3 6510 238 67 19 chr6 25868275 25869921 -163409633 - MSTD-int LTR MaLR 0 1735 11 1651 201 39 49 chr6 25869925 25869984 -163409570 - MSTD LTR MaLR -11 385 327 2921 6 0 0 chr6 25869984 25870299 -163409255 + AluYb8 SINE Alu 1 315 -3 1651 201 39 49 chr6 25870299 25870628 -163408926 - MSTD LTR MaLR -69 327 1 364 288 33 47 chr6 25871497 25871709 -163407845 - L1MC4 LINE L1 -1026 7016 6808 192 97 0 0 chr6 25873083 25873114 -163406440 + (CGAG)n Simple_repeat Simple_repeat 2 32 0 2585 48 3 3 chr6 25873500 25873809 -163405745 + AluY SINE Alu 3 311 0 237 163 0 0 chr6 25873982 25874031 -163405523 + A-rich Low_complexity Low_complexity 4 52 0 294 263 26 40 chr6 25874118 25874194 -163405360 - L2 LINE L2 -47 3266 3192 27 49 0 0 chr6 25877166 25877207 -163402347 + AT_rich Low_complexity Low_complexity 1 41 0 1390 116 65 0 chr6 25877421 25877636 -163401918 - MER30 DNA MER1_type -1 229 1 260 295 24 69 chr6 25878508 25878673 -163400881 - MIR SINE MIR -41 167 11 1165 209 146 7 chr6 25878783 25879085 -163400469 + MER2 DNA MER2_type 1 344 -1 27 0 0 0 chr6 25879617 25879644 -163399910 + AT_rich Low_complexity Low_complexity 1 27 0 200 264 0 42 chr6 25879664 25879736 -163399818 + A-rich Low_complexity Low_complexity 5 73 0 181 362 7 7 chr6 25879810 25879948 -163399606 + L2 LINE L2 2827 2964 -308 269 287 55 105 chr6 25880319 25880500 -163399054 + MER5B DNA MER1_type 7 178 0 336 325 124 18 chr6 25880790 25880959 -163398595 + MIR SINE MIR 1 187 -75 318 336 81 20 chr6 25882550 25882699 -163396855 - L2 LINE L2 0 3272 3115 2133 117 0 7 chr6 25882816 25883107 -163396447 + AluSg SINE Alu 1 289 -21 254 320 13 0 chr6 25883984 25884059 -163395495 - L2 LINE L2 -12 3260 3185 1121 128 17 39 chr6 25884068 25884248 -163395306 + AluSg/x SINE Alu 117 292 -20 226 164 18 0 chr6 25884254 25884309 -163395245 + L1MCa LINE L1 2006 2061 -4365 272 271 35 0 chr6 25884354 25884439 -163395115 + L1MC4 LINE L1 6614 6701 -1341 2078 114 17 17 chr6 25884798 25885097 -163394457 + AluSx SINE Alu 4 302 -10 7704 21 1 0 chr6 25885097 25886724 -163392830 + L1PA3 LINE L1 4528 6155 0 238 193 34 0 chr6 25887239 25887263 -163392291 + (TATATG)n Simple_repeat Simple_repeat 1 23 -68 2485 160 87 58 chr6 25887263 25887603 -163391951 + MER6A DNA MER2_type 2 368 -497 2022 150 7 0 chr6 25887603 25887910 -163391644 + AluSx SINE Alu 3 311 -1 2485 160 87 58 chr6 25887910 25888156 -163391398 + MER6A DNA MER2_type 368 605 0 238 193 34 0 chr6 25888156 25888219 -163391335 + (TATATG)n Simple_repeat Simple_repeat 23 91 0 21 0 0 0 chr6 25889454 25889475 -163390079 + AT_rich Low_complexity Low_complexity 1 21 0 47 78 0 0 chr6 25890680 25890783 -163388771 + AT_rich Low_complexity Low_complexity 1 103 0 421 327 187 21 chr6 25891571 25892214 -163387340 - L2 LINE L2 -1 3312 2550 326 300 133 48 chr6 25892413 25892449 -163387105 - L1MC4a LINE L1 -1898 5910 5875 399 288 158 42 chr6 25892449 25892810 -163386744 - L1MB7 LINE L1 -320 5864 5462 600 275 162 28 chr6 25892993 25893277 -163386277 - L2 LINE L2 -955 2359 2038 217 324 35 56 chr6 25894915 25895057 -163384497 - L2 LINE L2 -1483 1831 1693 354 297 193 34 chr6 25895171 25895440 -163384114 - L2 LINE L2 -2772 542 231 226 279 41 93 chr6 25896243 25896397 -163383157 + MIR SINE MIR 13 162 -62 414 250 21 35 chr6 25898100 25898244 -163381310 - L1ME LINE L1 -460 5661 5520 229 343 137 20 chr6 25898306 25898452 -163381102 - L2 LINE L2 -8 3264 3102 217 345 62 18 chr6 25898759 25898872 -163380682 + MIR3 SINE MIR 6 123 -85 236 280 161 35 chr6 25899179 25899322 -163380232 + L2 LINE L2 3152 3312 -1 532 0 29 0 chr6 25899821 25899889 -163379665 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 1537 215 133 95 chr6 25899936 25900675 -163378879 - L1ME2 LINE L1 -9 6224 5458 2044 147 0 3 chr6 25900681 25900988 -163378566 - AluSx SINE Alu -4 308 3 2183 127 0 0 chr6 25901067 25901367 -163378187 - AluSq SINE Alu -13 300 1 3596 259 83 15 chr6 25901387 25902984 -163376570 - L1ME2 LINE L1 -813 5402 3697 705 251 87 18 chr6 25903009 25903400 -163376154 - L1ME2 LINE L1 -2842 3373 2956 599 338 34 22 chr6 25903398 25903718 -163375836 - L1ME2 LINE L1 -5972 424 101 * 37 23 0 0 chr6 25903927 25903971 -163375583 + AT_rich Low_complexity Low_complexity 1 44 0 1513 244 161 16 chr6 25904158 25904654 -163374900 - MLT1E LTR MaLR -25 568 1 286 151 27 0 chr6 25904691 25904764 -163374790 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 386 316 26 32 chr6 25904856 25905198 -163374356 + L1ME3 LINE L1 1277 1616 -4780 368 99 37 12 chr6 25905202 25905283 -163374271 + (TA)n Simple_repeat Simple_repeat 2 84 0 696 281 33 24 chr6 25905303 25905752 -163373802 + L1ME3 LINE L1 5081 5534 -709 824 291 67 17 chr6 25905776 25906134 -163373420 + L1ME3 LINE L1 5854 6229 -2 572 293 5 49 chr6 25906443 25906648 -163372906 - MIR SINE MIR -6 256 61 242 250 0 17 chr6 25906650 25906710 -163372844 + L2 LINE L2 3254 3312 -1 369 315 293 6 chr6 25906906 25907230 -163372324 - L2 LINE L2 0 3313 2897 295 265 10 10 chr6 25907573 25907671 -163371883 - MER5A DNA MER1_type -83 106 9 287 348 81 6 chr6 25908010 25908171 -163371383 - L2 LINE L2 -6 3307 3135 22 0 0 0 chr6 25908696 25908718 -163370836 + AT_rich Low_complexity Low_complexity 1 22 0 280 307 193 0 chr6 25910573 25910713 -163368841 + L2 LINE L2 3145 3311 -2 624 279 20 56 chr6 25911058 25911309 -163368245 + MIR SINE MIR 2 243 -19 1548 136 3 92 chr6 25911810 25912126 -163367428 - AluJb SINE Alu -20 292 5 225 161 69 0 chr6 25912521 25912608 -163366946 + (TA)n Simple_repeat Simple_repeat 1 93 0 673 304 75 8 chr6 25912988 25913241 -163366313 - MLT1J LTR MaLR -4 507 238 6695 213 60 60 chr6 25913505 25916337 -163363217 + L1MC3 LINE L1 5281 7995 0 630 199 171 0 chr6 25917270 25917451 -163362103 - L1MA4 LINE L1 -6 6294 6083 1698 156 3 11 chr6 25917533 25917815 -163361739 - AluJb SINE Alu -32 280 1 2533 57 0 13 chr6 25918089 25918404 -163361150 + AluY SINE Alu 1 311 0 6641 28 13 1 chr6 25918406 25919200 -163360354 + L1PA5 LINE L1 5352 6154 0 312 326 78 0 chr6 25919331 25919472 -163360082 + MIR SINE MIR 105 256 -6 201 323 50 20 chr6 25920687 25920786 -163358768 + L2 LINE L2 2588 2689 -625 889 279 50 76 chr6 25922402 25922863 -163356691 + L1ME LINE L1 13 460 -5610 2285 122 0 0 chr6 25922863 25923174 -163356380 + AluSx SINE Alu 2 312 0 889 279 50 76 chr6 25923174 25923249 -163356305 + L1ME LINE L1 460 535 -5535 286 293 105 19 chr6 25923276 25923542 -163356012 + L1ME LINE L1 616 904 -5166 678 278 40 31 chr6 25923542 25923765 -163355789 - MLT2F LTR ERVL -438 225 1 1496 191 0 11 chr6 25923892 25924165 -163355389 + AluJb SINE Alu 31 300 -12 928 267 98 4 chr6 25924365 25924642 -163354912 - ERVL LTR ERVL -371 5393 5091 1099 251 67 6 chr6 25924642 25924957 -163354597 + MLT1C LTR MaLR 6 339 -128 2061 275 14 29 chr6 25924958 25925515 -163354039 - ERVL LTR ERVL -1937 3827 3279 2673 255 81 25 chr6 25925528 25926703 -163352851 - ERVL LTR ERVL -2692 3072 1795 312 268 82 0 chr6 25926704 25926801 -163352753 + L1M4 LINE L1 4260 4364 -1782 747 303 56 14 chr6 25926802 25927086 -163352468 - ERVL LTR ERVL -4704 1060 765 700 193 225 0 chr6 25927682 25927869 -163351685 - MLT2F LTR ERVL -2 661 433 1350 228 102 39 chr6 25927879 25928261 -163351293 - MLT1F1 LTR MaLR -6 561 156 594 240 0 27 chr6 25928272 25928422 -163351132 + MLT1A1 LTR MaLR 13 158 -207 1612 76 23 1 chr6 25928422 25928758 -163350796 - L1PA8 LINE L1 -673 5481 5141 * 5055 76 4 7 chr6 25928757 25929438 -163350116 + L1PA8 LINE L1 5493 6171 -1 980 227 14 5 chr6 25929446 25929666 -163349888 + MLT1A1 LTR MaLR 144 365 0 513 208 92 8 chr6 25929671 25929791 -163349763 - MLT1F1 LTR MaLR -428 139 10 1137 254 69 40 chr6 25929809 25930329 -163349225 + L1ME2 LINE L1 5627 6161 -3 234 197 79 150 chr6 25930611 25930738 -163348816 + MLT1H LTR MaLR 229 346 -203 193 305 189 24 chr6 25932330 25932477 -163347077 + MIR SINE MIR 15 193 -69 2102 89 0 0 chr6 25932477 25932768 -163346786 + L1PA8 LINE L1 5878 6168 -4 193 305 189 24 chr6 25932768 25932784 -163346770 + MIR SINE MIR 193 205 -57 3081 167 48 32 chr6 25933704 25934411 -163345143 - L1MA9 LINE L1 -5 6307 5590 1195 112 0 22 chr6 25934414 25934592 -163344962 - AluY SINE Alu -36 275 102 5899 176 66 27 chr6 25934592 25936103 -163343451 - L1MA9 LINE L1 -722 5590 4011 261 0 0 0 chr6 25936471 25936500 -163343054 + (CA)n Simple_repeat Simple_repeat 2 30 0 402 124 14 0 chr6 25937674 25937742 -163341812 + L1PA13 LINE L1 6064 6142 -14 5526 193 39 27 chr6 25939260 25941467 -163338087 - L1PA16 LINE L1 -16 6150 3932 2234 42 7 14 chr6 25941509 25941793 -163337761 - L1PA5 LINE L1 -7 6147 5866 5515 53 16 0 chr6 25941793 25942982 -163336572 + L1PA5 LINE L1 4663 5864 -290 918 204 0 0 chr6 25943757 25943924 -163335630 + MER3 DNA MER1_type 43 209 0 2197 103 3 13 chr6 25944421 25944723 -163334831 + AluSx SINE Alu 14 312 0 316 220 99 0 chr6 25945048 25945139 -163334415 + L1MB7 LINE L1 6073 6172 -12 2088 113 7 0 chr6 25945246 25945530 -163334024 + AluSp SINE Alu 1 286 -27 1561 200 60 3 chr6 25946571 25946921 -163332633 - L1MB4 LINE L1 -15 6165 5796 1685 175 17 3 chr6 25947689 25947980 -163331574 - AluSx SINE Alu -17 295 1 290 82 0 0 chr6 25950747 25950796 -163328758 + Charlie5 DNA MER1_type 2438 2486 -126 1927 99 4 0 chr6 25950881 25951134 -163328420 - AluSg SINE Alu -14 296 43 27 0 0 0 chr6 25951366 25951393 -163328161 + AT_rich Low_complexity Low_complexity 1 27 0 309 280 9 19 chr6 25951466 25951573 -163327981 - L1MC4 LINE L1 -1323 6719 6614 * 314 272 0 22 chr6 25951483 25951575 -163327979 + L1MC4 LINE L1 6614 6703 -1339 967 214 97 13 chr6 25952368 25952667 -163326887 + MER33 DNA MER1_type 1 324 0 377 271 60 12 chr6 25952797 25952963 -163326591 + L1ME LINE L1 5525 5698 -423 23 0 0 0 chr6 25953633 25953656 -163325898 + AT_rich Low_complexity Low_complexity 1 23 0 184 239 152 0 chr6 25954384 25954430 -163325124 + L2 LINE L2 3237 3289 -24 279 188 94 0 chr6 25954564 25954628 -163324926 - L1ME1 LINE L1 -21 6145 6076 * 1750 265 83 24 chr6 25954627 25955788 -163323766 - L1MEc LINE L1 -3135 3080 1874 298 263 32 21 chr6 25955822 25955917 -163323637 - L1ME1 LINE L1 -31 6135 6040 1410 227 48 93 chr6 25955972 25956488 -163323066 + MLT2B1 LTR ERVL 18 510 -10 1481 274 16 42 chr6 25956492 25956905 -163322649 - L1ME1 LINE L1 -187 5979 5580 2183 108 0 3 chr6 25956905 25957201 -163322353 + AluSx SINE Alu 1 295 -17 1481 274 16 42 chr6 25957201 25957290 -163322264 - L1ME1 LINE L1 -586 5580 5490 717 310 73 20 chr6 25957300 25957933 -163321621 - L1MEc LINE L1 -5232 1164 499 270 287 9 43 chr6 25958080 25958195 -163321359 - L1MEc LINE L1 -6241 155 45 24 0 0 0 chr6 25960320 25960344 -163319210 + AT_rich Low_complexity Low_complexity 1 24 0 264 359 56 34 chr6 25960357 25960591 -163318963 - MIR SINE MIR -16 246 8 21703 31 6 0 chr6 25960908 25964306 -163315248 + L1PA3 LINE L1 2751 6154 -1 237 230 23 23 chr6 25965019 25965106 -163314448 + (CATA)n Simple_repeat Simple_repeat 2 88 0 308 249 2 10 chr6 25965143 25965240 -163314314 + L1MC4 LINE L1 7904 7992 -3 391 296 97 36 chr6 25966557 25966753 -163312801 + MIR SINE MIR 20 227 -35 210 341 95 16 chr6 25969786 25969912 -163309642 + L2 LINE L2 3122 3257 -15 262 154 0 0 chr6 25970542 25970594 -163308960 + L1MCc LINE L1 1417 1468 -4955 2258 79 27 3 chr6 25970746 25971038 -163308516 + AluY SINE Alu 4 302 -9 1002 282 123 7 chr6 25971074 25971528 -163308026 + L1ME3A LINE L1 5627 6133 -37 25 0 0 0 chr6 25971549 25971574 -163307980 + AT_rich Low_complexity Low_complexity 1 25 0 673 203 8 0 chr6 25973236 25973359 -163306195 - FLAM_C SINE Alu -12 131 8 337 351 80 0 chr6 25973560 25973748 -163305806 + MIR SINE MIR 48 250 -12 521 379 53 32 chr6 25973925 25974449 -163305105 + L2 LINE L2 2506 3210 -62 314 308 22 11 chr6 25974580 25974671 -163304883 + L2 LINE L2 3202 3293 -20 186 133 0 0 chr6 25975327 25975357 -163304197 + (T)n Simple_repeat Simple_repeat 1 30 0 233 340 28 57 chr6 25976002 25976143 -163303411 - MIR3 SINE MIR -52 156 20 296 269 141 43 chr6 25976961 25977195 -163302359 + MIR SINE MIR 6 262 0 * 338 372 73 38 chr6 25977173 25977514 -163302040 - L3 LINE CR1 -7 1570 1218 8804 115 73 3 chr6 25977832 25980064 -163299490 + L1PA10 LINE L1 3765 6159 -9 246 273 68 61 chr6 25981581 25981713 -163297841 - MIR SINE MIR -123 139 7 216 0 0 0 chr6 25981854 25981878 -163297676 + (A)n Simple_repeat Simple_repeat 1 24 0 195 42 0 0 chr6 25982672 25982696 -163296858 + (T)n Simple_repeat Simple_repeat 1 24 0 7450 22 0 0 chr6 25982852 25983719 -163295835 + L1PA3 LINE L1 5286 6152 -3 312 284 23 0 chr6 25985603 25985691 -163293863 + L1MC4 LINE L1 6614 6703 -1339 * 335 301 0 0 chr6 25985632 25985725 -163293829 - L1MC4 LINE L1 -1336 6706 6614 * 345 227 0 62 chr6 25985706 25985803 -163293751 + L1MC4 LINE L1 6613 6703 -1339 307 264 0 66 chr6 25985772 25985878 -163293676 - L1MC4 LINE L1 -1336 6706 6608 * 354 242 0 42 chr6 25985876 25985971 -163293583 + L1MC4 LINE L1 6613 6703 -1339 307 264 0 66 chr6 25985940 25986046 -163293508 - L1MC4 LINE L1 -1336 6706 6608 * 301 262 0 75 chr6 25986042 25986149 -163293405 - L1MC4 LINE L1 -1336 6706 6608 * 308 238 0 79 chr6 25986179 25986280 -163293274 - L1MC4 LINE L1 -1336 6706 6614 363 194 0 0 chr6 25986285 25986388 -163293166 + (TA)n Simple_repeat Simple_repeat 1 103 0 229 59 0 20 chr6 25986388 25986439 -163293115 - LTR66 LTR ERVL -166 444 395 312 287 108 54 chr6 25986474 25986641 -163292913 + MIR3 SINE MIR 32 207 -1 267 242 106 53 chr6 25988163 25988295 -163291259 + LTR67 LTR ERVL 347 485 -72 41796 39 23 3 chr6 25988307 25994335 -163285219 + L1PA3 LINE L1 1 6155 0 2812 78 3 5 chr6 25994336 25994722 -163284832 + L1PA7 LINE L1 5769 6153 -1 23 54 0 0 chr6 25995188 25995225 -163284329 + AT_rich Low_complexity Low_complexity 1 37 0 260 348 25 29 chr6 25995357 25995561 -163283993 - L3 LINE CR1 -465 1112 910 1407 201 0 82 chr6 25995561 25995890 -163283664 + AluJb SINE Alu 1 302 0 1495 277 89 37 chr6 25995933 25996393 -163283161 + L1MEc LINE L1 284 719 -5677 1600 149 133 104 chr6 25996393 25996844 -163282710 - MLT1C LTR MaLR 0 467 4 1495 277 89 37 chr6 25996844 25997639 -163281915 + L1MEc LINE L1 719 1472 -4924 2161 113 0 7 chr6 25997639 25997941 -163281613 + AluSg SINE Alu 1 300 -10 1495 277 89 37 chr6 25997941 25998436 -163281118 + L1MEc LINE L1 1472 2243 -4153 * 6550 66 6 1 chr6 25998423 25999262 -163280292 - L1P LINE L1 -1848 4298 3456 2277 239 79 16 chr6 25999915 26000724 -163278830 - L1M4 LINE L1 -3159 2987 2128 7239 37 7 0 chr6 26000748 26002079 -163277475 - L1PA4 LINE L1 -1 6154 4814 * 23584 53 4 3 chr6 26002074 26005884 -163273670 + L1PA5 LINE L1 2343 6153 -1 1831 164 0 10 chr6 26006363 26006674 -163272880 + AluJb SINE Alu 2 309 -3 325 236 170 0 chr6 26006690 26006902 -163272652 + L1ME LINE L1 5561 5808 -313 220 137 39 0 chr6 26006962 26007013 -163272541 + (CA)n Simple_repeat Simple_repeat 2 54 0 1907 198 8 6 chr6 26007020 26007384 -163272170 - MLT1A1 LTR MaLR 0 365 1 414 237 179 6 chr6 26008951 26009057 -163270497 - LTR50 LTR ERVL 0 795 709 180 0 0 0 chr6 26009057 26009077 -163270477 + (CTA)n Simple_repeat Simple_repeat 1 20 0 414 237 179 6 chr6 26009077 26009143 -163270411 - LTR50 LTR ERVL -86 709 593 1258 216 56 44 chr6 26009675 26010088 -163269466 - LTR52 LTR ERVL -3 418 1 255 31 0 0 chr6 26010322 26010354 -163269200 + (TG)n Simple_repeat Simple_repeat 1 32 0 266 303 114 59 chr6 26010671 26010734 -163268820 - HAL1b LINE L1 -439 909 851 723 85 101 47 chr6 26010734 26010863 -163268691 + MER85 DNA T2_type 3 138 -1 266 303 114 59 chr6 26010863 26011394 -163268160 - HAL1b LINE L1 -497 851 282 23 68 0 0 chr6 26012257 26012301 -163267253 + AT_rich Low_complexity Low_complexity 1 44 0 3348 194 84 10 chr6 26012301 26013212 -163266342 - L1MB7 LINE L1 -8 6674 5695 1028 136 26 0 chr6 26013216 26013371 -163266183 - AluSg/x SINE Alu -17 295 137 3470 226 51 24 chr6 26013371 26014477 -163265077 - L1MB7 LINE L1 -945 5699 4565 393 274 86 12 chr6 26014456 26014711 -163264843 - L1MB7 LINE L1 -4031 2615 2342 * 1292 260 71 11 chr6 26014801 26015251 -163264303 - L1MB7 LINE L1 -4538 2108 1632 2592 228 51 23 chr6 26015273 26015998 -163263556 - L1MB7 LINE L1 -4985 1557 813 268 286 57 23 chr6 26016003 26016178 -163263376 - L1MEd LINE L1 -5041 1078 898 408 262 152 8 chr6 26016393 26016649 -163262905 + L1ME4a LINE L1 5585 5877 -244 34 24 0 0 chr6 26018250 26018291 -163261263 + AT_rich Low_complexity Low_complexity 1 41 0 419 50 119 0 chr6 26018291 26018450 -163261104 + (TA)n Simple_repeat Simple_repeat 1 178 0 21 0 0 0 chr6 26018450 26018471 -163261083 + AT_rich Low_complexity Low_complexity 1 21 0 458 359 36 28 chr6 26019029 26019422 -163260132 + MERVL LTR ERVL 4720 5115 -370 319 272 89 57 chr6 26019544 26019702 -163259852 + MERVL LTR ERVL 5173 5335 -319 387 299 107 0 chr6 26019771 26019948 -163259606 - L1ME LINE L1 -305 5816 5621 936 57 81 0 chr6 26020122 26020246 -163259308 - MER85 DNA T2_type 0 139 6 196 132 0 26 chr6 26020679 26020717 -163258837 + L2 LINE L2 3272 3308 -5 1868 175 105 33 chr6 26021446 26021903 -163257651 + LTR2B LTR ERV1 1 490 0 403 250 35 49 chr6 26022077 26022221 -163257333 - ERVL LTR ERVL -5061 703 562 43 56 0 0 chr6 26023089 26023160 -163256394 + AT_rich Low_complexity Low_complexity 1 71 0 429 236 19 143 chr6 26023336 26023595 -163255959 - L2 LINE L2 -2 3311 3085 1508 58 0 0 chr6 26023709 26023899 -163255655 - L1PA5 LINE L1 0 6154 5965 344 390 22 16 chr6 26023982 26024164 -163255390 + L1MEc LINE L1 268 450 -5946 2111 105 3 22 chr6 26024261 26024576 -163254978 + AluSc SINE Alu 1 309 0 194 306 159 45 chr6 26027510 26027667 -163251887 - MIR SINE MIR -80 182 8 304 362 58 11 chr6 26027848 26028022 -163251532 - MIR3 SINE MIR -9 199 18 2857 3 0 0 chr6 26028415 26028726 -163250828 - AluYa5 SINE Alu 0 311 1 222 37 0 0 chr6 26029074 26029101 -163250453 + (A)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr6 26029325 26029348 -163250206 + AT_rich Low_complexity Low_complexity 1 23 0 416 265 113 54 chr6 26029497 26029933 -163249621 + L1ME4a LINE L1 5584 6039 -82 6459 87 22 22 chr6 26029937 26031102 -163248452 - L1PA8 LINE L1 -7 6165 4993 5807 91 11 1 chr6 26031102 26031973 -163247581 + L1PA8 LINE L1 4098 4977 -1169 234 271 263 0 chr6 26032140 26032273 -163247281 - MIR SINE MIR -29 233 66 246 202 39 47 chr6 26032482 26032611 -163246943 + (CTATA)n Simple_repeat Simple_repeat 2 129 0 478 68 68 0 chr6 26032624 26032742 -163246812 + (TA)n Simple_repeat Simple_repeat 1 126 0 376 321 46 51 chr6 26032744 26032940 -163246614 + MIR SINE MIR 20 214 -48 21 36 0 0 chr6 26033841 26033869 -163245685 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr6 26033944 26033982 -163245572 + AT_rich Low_complexity Low_complexity 1 38 0 271 275 0 0 chr6 26037058 26037138 -163242416 + L1M1 LINE L1 3539 3618 -3947 226 297 14 0 chr6 26037735 26037809 -163241745 + MIR SINE MIR 21 95 -167 563 100 12 0 chr6 26039695 26039775 -163239779 + AluSc SINE Alu 4 84 -225 1070 175 37 30 chr6 26039785 26040499 -163239055 + SVA Other Other 434 703 -683 1644 104 0 0 chr6 26040619 26040830 -163238724 + AluSc SINE Alu 73 283 -26 402 261 88 106 chr6 26041729 26042058 -163237496 - L2 LINE L2 0 3313 2991 3135 98 28 0 chr6 26042094 26042563 -163236991 + L1PA13 LINE L1 5660 6141 -22 188 174 72 43 chr6 26042895 26042964 -163236590 + L2 LINE L2 2905 2975 -338 2095 102 28 7 chr6 26043301 26043585 -163235969 - AluSq SINE Alu -10 303 14 631 217 12 36 chr6 26044571 26044737 -163234817 + L1MDa LINE L1 21 182 -6358 1471 265 74 26 chr6 26044742 26045516 -163234038 + L1M1 LINE L1 4631 5453 -2112 2229 107 7 7 chr6 26045516 26045824 -163233730 - AluSx SINE Alu -4 308 1 1471 265 74 26 chr6 26045824 26045925 -163233629 + L1M1 LINE L1 5453 5548 -2017 1078 129 10 10 chr6 26045936 26046129 -163233425 + L1PB1 LINE L1 3 195 -6668 12492 194 46 12 chr6 26046133 26049613 -163229941 + L1PB1 LINE L1 635 4541 -2326 2278 106 0 13 chr6 26049613 26049924 -163229630 + AluSg SINE Alu 1 307 -3 12492 194 46 12 chr6 26049924 26052334 -163227220 + L1PB1 LINE L1 4541 6867 0 3146 228 73 20 chr6 26052389 26054212 -163225342 + L1MD1 LINE L1 5546 7458 -203 2358 92 0 0 chr6 26054214 26054509 -163225045 + AluSx SINE Alu 1 295 -17 27 81 0 0 chr6 26055339 26055401 -163224153 + AT_rich Low_complexity Low_complexity 1 62 0 512 284 17 0 chr6 26056167 26056343 -163223211 + (CA)n Simple_repeat Simple_repeat 2 180 0 398 240 6 0 chr6 26056380 26056551 -163223003 + (CA)n Simple_repeat Simple_repeat 2 173 0 201 361 52 31 chr6 26056581 26056772 -163222782 + L2 LINE L2 2551 2745 -569 1872 126 11 3 chr6 26056775 26057061 -163222493 + L1PA15 LINE L1 5860 6147 -18 369 233 71 4 chr6 26057913 26058018 -163221536 + L1ME4a LINE L1 5493 5583 -538 186 43 0 0 chr6 26058076 26058099 -163221455 + (CA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr6 26058159 26058188 -163221366 + AT_rich Low_complexity Low_complexity 1 29 0 344 296 61 15 chr6 26058266 26058398 -163221156 + L1ME4a LINE L1 5927 6064 -57 230 247 47 47 chr6 26060129 26060214 -163219340 + MIR SINE MIR 68 152 -56 347 0 23 0 chr6 26060662 26060705 -163218849 + (CA)n Simple_repeat Simple_repeat 2 45 0 689 185 7 15 chr6 26060791 26060926 -163218628 + AluJb SINE Alu 1 134 -178 180 0 0 0 chr6 26060948 26060968 -163218586 + (TA)n Simple_repeat Simple_repeat 2 21 0 220 351 123 18 chr6 26061144 26061315 -163218239 + MIR3 SINE MIR 14 202 -6 194 333 29 0 chr6 26061275 26061344 -163218210 + L2 LINE L2 651 721 -2593 * 793 253 93 8 chr6 26062417 26062674 -163216880 - MLT1C LTR MaLR 0 467 189 2410 87 6 3 chr6 26062719 26063030 -163216524 - AluSx SINE Alu 0 312 1 214 400 11 11 chr6 26063048 26063143 -163216411 - MIR SINE MIR -152 110 16 249 333 0 14 chr6 26063424 26063496 -163216058 + L2 LINE L2 3151 3221 -51 314 325 84 18 chr6 26063559 26063725 -163215829 - MIR SINE MIR -35 227 51 474 294 7 0 chr6 26064594 26064740 -163214814 - MIR SINE MIR -33 229 83 243 310 10 0 chr6 26064927 26065027 -163214527 - LTR33 LTR ERVL -53 468 368 1986 135 3 52 chr6 26065229 26065555 -163213999 + AluSx SINE Alu 1 310 -2 297 284 17 52 chr6 26067532 26067648 -163211906 - MIR SINE MIR -59 203 92 604 323 65 4 chr6 26070765 26070997 -163208557 + MIR SINE MIR 3 248 -14 1108 233 37 18 chr6 26071432 26071758 -163207796 + L1M1 LINE L1 16 347 -7218 283 350 62 46 chr6 26071820 26072014 -163207540 - L2 LINE L2 -87 3185 2989 725 251 92 26 chr6 26073271 26073542 -163206012 - MER110 LTR ERV1 -37 454 166 227 198 10 109 chr6 26073618 26073719 -163205835 - MER110A LTR ERV1 -298 170 80 289 208 247 0 chr6 26074187 26074264 -163205290 + L2 LINE L2 3176 3271 -1 298 391 0 0 chr6 26074405 26074515 -163205039 - L2 LINE L2 -1 3271 3162 242 319 0 11 chr6 26074537 26074631 -163204923 + (CCA)n Simple_repeat Simple_repeat 3 95 0 184 254 104 30 chr6 26074747 26074814 -163204740 - MER5A DNA MER1_type -109 80 9 1518 222 88 49 chr6 26075729 26076215 -163203339 - MLT1D LTR MaLR 0 505 1 23 78 0 0 chr6 26076295 26076346 -163203208 + AT_rich Low_complexity Low_complexity 1 51 0 1471 173 29 0 chr6 26077943 26078255 -163201299 + L1 LINE L1 4375 4695 -1451 573 100 0 0 chr6 26078257 26078347 -163201207 - Tigger5 DNA MER2_type -182 2141 2052 471 162 51 8 chr6 26078354 26078471 -163201083 - L1MC3 LINE L1 -11 7774 7653 2213 187 29 65 chr6 26078480 26079037 -163200517 - L1MC3 LINE L1 -850 6935 6399 9725 139 47 8 chr6 26079088 26079885 -163199669 + Tigger1 DNA MER2_type 128 893 -1525 2049 126 27 7 chr6 26079885 26080186 -163199368 - AluSx SINE Alu -5 307 1 9725 139 47 8 chr6 26080186 26081161 -163198393 + Tigger1 DNA MER2_type 893 1968 -450 1319 163 19 31 chr6 26081167 26081424 -163198130 + Tigger1 DNA MER2_type 2165 2418 0 2041 178 146 66 chr6 26081437 26082101 -163197453 - L1MC3 LINE L1 -1421 6364 5648 * 2469 298 85 53 chr6 26082081 26083055 -163196499 - L1MEc LINE L1 -1459 4756 3730 3607 74 118 4 chr6 26083055 26083598 -163195956 + LTR14B LTR ERVK 4 608 0 2469 298 85 53 chr6 26083598 26083905 -163195649 - L1MEc LINE L1 -2485 3730 3434 376 236 93 12 chr6 26083898 26084059 -163195495 - L1MEc LINE L1 -3123 3092 2919 * 1057 251 78 17 chr6 26084069 26084623 -163194931 - L1MEc LINE L1 -3504 2711 2170 1994 208 26 9 chr6 26084933 26085360 -163194194 + Tigger2a DNA MER2_type 1 434 0 192 298 0 0 chr6 26085560 26085607 -163193947 - MIR SINE MIR -120 142 96 21 36 0 0 chr6 26086421 26086449 -163193105 + AT_rich Low_complexity Low_complexity 1 28 0 243 169 108 0 chr6 26086852 26086917 -163192637 - MLT1A1 LTR MaLR 0 396 325 32 0 0 0 chr6 26086927 26086959 -163192595 + AT_rich Low_complexity Low_complexity 1 32 0 948 237 82 40 chr6 26086966 26087270 -163192284 - MLT1A1 LTR MaLR -48 317 1 324 308 112 50 chr6 26087270 26087592 -163191962 + HAL1 LINE L1 97 438 -2069 1125 210 47 5 chr6 26087618 26088082 -163191472 + MLT1E2 LTR MaLR 70 623 -3 245 262 65 9 chr6 26088709 26088816 -163190738 + HAL1 LINE L1 1289 1401 -1106 5380 109 43 37 chr6 26090038 26091668 -163187886 - L1PA10 LINE L1 -16 6152 4525 676 160 100 7 chr6 26091668 26091818 -163187736 + L1PA13 LINE L1 1973 2136 -4651 1391 57 62 0 chr6 26091940 26092132 -163187422 - L1PA4 LINE L1 -8 6147 5944 283 327 129 0 chr6 26093158 26093259 -163186295 - MIR SINE MIR -78 130 17 1002 213 253 26 chr6 26094134 26094187 -163185367 + MLT1A2 LTR MaLR 1 41 -333 3036 162 34 42 chr6 26094187 26094804 -163184750 - LTR9 LTR ERV1 0 612 1 1002 213 253 26 chr6 26094804 26095055 -163184499 + MLT1A2 LTR MaLR 41 374 0 192 97 0 0 chr6 26097180 26097211 -163182343 + (TC)n Simple_repeat Simple_repeat 1 31 0 329 244 111 76 chr6 26097293 26097465 -163182089 - MER5B DNA MER1_type 0 178 1 2438 47 0 20 chr6 26097574 26097873 -163181681 + AluY SINE Alu 1 293 -18 1118 224 65 78 chr6 26098224 26098657 -163180897 + LTR37B LTR ERV1 9 435 -33 2174 150 19 6 chr6 26098704 26099063 -163180491 - THE1B LTR MaLR 0 364 1 1780 164 10 7 chr6 26099978 26100271 -163179283 + AluSx SINE Alu 1 294 -18 402 286 72 27 chr6 26102058 26102264 -163177290 + MLT1G LTR MaLR 42 258 -332 1488 198 40 3 chr6 26102974 26103272 -163176282 + AluJo SINE Alu 1 309 -3 278 268 114 0 chr6 26103996 26104119 -163175435 - Charlie7 DNA MER1_type -2475 137 1 702 259 74 0 chr6 26104127 26104316 -163175238 + MER58A DNA MER1_type 1 203 -21 925 212 0 0 chr6 26104369 26104534 -163175020 + FAM SINE Alu 3 167 -8 270 266 106 80 chr6 26104775 26104911 -163174643 + MIR SINE MIR 3 147 -115 2150 126 0 0 chr6 26104911 26105204 -163174350 + AluSx SINE Alu 1 293 -19 270 266 106 80 chr6 26105204 26105266 -163174288 + MIR SINE MIR 147 206 -56 21 0 0 0 chr6 26105274 26105295 -163174259 + AT_rich Low_complexity Low_complexity 1 21 0 1228 244 74 65 chr6 26105605 26106065 -163173489 + MLT1C LTR MaLR 1 464 -3 204 309 0 15 chr6 26106923 26106991 -163172563 + GA-rich Low_complexity Low_complexity 2 68 0 2300 178 79 5 chr6 26108627 26108694 -163170860 - MER70B LTR ERVL -102 476 415 585 28 0 0 chr6 26108694 26108765 -163170789 + (CA)n Simple_repeat Simple_repeat 1 71 0 2300 178 79 5 chr6 26108765 26109140 -163170414 - MER70B LTR ERVL -163 415 1 357 220 69 27 chr6 26109332 26109472 -163170082 - MLT1I LTR MaLR -19 428 293 585 69 0 0 chr6 26109498 26109585 -163169969 + (CA)n Simple_repeat Simple_repeat 2 88 0 252 296 80 75 chr6 26110315 26110541 -163169013 - MIR SINE MIR -2 260 34 1508 185 109 3 chr6 26110816 26111146 -163168408 - MLT1A1 LTR MaLR 0 365 1 2230 111 0 22 chr6 26111823 26112138 -163167416 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr6 26112236 26112257 -163167297 + AT_rich Low_complexity Low_complexity 1 21 0 265 304 65 77 chr6 26112495 26112663 -163166891 - MIR SINE MIR -73 189 24 1965 121 0 65 chr6 26112892 26113214 -163166340 + AluSx SINE Alu 1 301 -11 1719 194 90 29 chr6 26113948 26114005 -163165549 - Charlie1b DNA MER1_type -2238 523 471 2161 99 0 33 chr6 26114005 26114308 -163165246 + AluSg SINE Alu 1 293 -17 1719 194 90 29 chr6 26114308 26114741 -163164813 - Charlie1b DNA MER1_type -2290 471 3 266 286 126 8 chr6 26114875 26114994 -163164560 + MIR SINE MIR 52 184 -78 607 240 0 0 chr6 26115666 26115787 -163163767 - L1ME LINE L1 -393 5777 5657 239 132 26 0 chr6 26115810 26115848 -163163706 + MER8 DNA MER2_type 3 41 -198 873 181 154 0 chr6 26115865 26116053 -163163501 + MER2 DNA MER2_type 128 344 -1 440 259 19 4 chr6 26116066 26116182 -163163372 - L1ME LINE L1 -545 5625 5512 10337 172 65 4 chr6 26116397 26118783 -163160771 + L1MA8 LINE L1 3060 5585 -727 1157 156 72 13 chr6 26118784 26119132 -163160422 - MSTA LTR MaLR 0 428 1 3704 162 29 11 chr6 26119132 26119825 -163159729 + L1MA8 LINE L1 5582 6286 -5 429 180 20 30 chr6 26120009 26120109 -163159445 + MER5A DNA MER1_type 13 111 -78 280 301 60 0 chr6 26120743 26120826 -163158728 - MER91C DNA MER1_type -15 125 38 24 0 0 0 chr6 26121562 26121586 -163157968 + AT_rich Low_complexity Low_complexity 1 24 0 827 271 75 16 chr6 26121798 26122053 -163157501 - MLT1D LTR MaLR -192 313 44 197 303 53 26 chr6 26122188 26122264 -163157290 - L2 LINE L2 -15 3257 3180 994 195 0 48 chr6 26122325 26122535 -163157019 - MLT1D LTR MaLR -305 200 1 410 200 0 0 chr6 26123333 26123413 -163156141 - L1ME LINE L1 -453 5668 5589 480 188 0 0 chr6 26123555 26123635 -163155919 + MER82 DNA MER2_type 1 80 -573 3911 227 42 4 chr6 26123821 26124844 -163154710 + L1P LINE L1 2601 3662 -2484 458 43 0 72 chr6 26125533 26125602 -163153952 + MER53 DNA DNA 2 65 -124 2036 127 0 3 chr6 26126431 26126715 -163152839 - AluSc SINE Alu -26 283 1 1206 178 35 5 chr6 26127177 26127379 -163152175 + AluJo SINE Alu 2 209 -103 447 19 0 0 chr6 26127391 26127443 -163152111 + (A)n Simple_repeat Simple_repeat 1 52 0 261 353 69 0 chr6 26128585 26128687 -163150867 + MIR3 SINE MIR 73 181 -27 368 288 63 37 chr6 26129583 26129663 -163149891 - L1ME3A LINE L1 -10 6160 6084 1160 227 174 78 chr6 26129663 26130204 -163149350 + MLT1E LTR MaLR 1 593 0 368 288 63 37 chr6 26130204 26130314 -163149240 - L1ME3A LINE L1 -86 6084 5965 710 284 64 25 chr6 26130424 26130763 -163148791 - L1ME3A LINE L1 -264 5898 5553 251 297 0 0 chr6 26131606 26131670 -163147884 - MLT1J2 LTR MaLR -120 330 267 239 226 97 40 chr6 26131847 26131971 -163147583 + L1MB1 LINE L1 3550 3680 -2466 * 3417 200 71 55 chr6 26131948 26132776 -163146778 + L1MB1 LINE L1 4150 4963 -1203 2103 4 0 0 chr6 26132776 26133002 -163146552 + AluY SINE Alu 86 311 0 3417 200 71 55 chr6 26133002 26133056 -163146498 + L1MB1 LINE L1 4963 5015 -1151 2222 123 0 0 chr6 26133056 26133366 -163146188 + AluSg SINE Alu 1 310 0 3417 200 71 55 chr6 26133366 26133419 -163146135 + L1MB1 LINE L1 5015 5066 -1100 2191 118 7 0 chr6 26133419 26133723 -163145831 + AluSg SINE Alu 1 306 -4 3417 200 71 55 chr6 26133723 26134683 -163144871 + L1MB1 LINE L1 5066 6148 -18 2187 100 3 0 chr6 26134826 26135115 -163144439 - AluSp SINE Alu -8 305 16 272 239 0 76 chr6 26137080 26137172 -163142382 + MIR SINE MIR 49 133 -75 324 256 38 53 chr6 26137579 26137712 -163141842 - MIR SINE MIR -46 216 86 452 312 29 23 chr6 26137871 26138044 -163141510 + MIR SINE MIR 56 229 -33 25 51 0 0 chr6 26138204 26138243 -163141311 + AT_rich Low_complexity Low_complexity 1 39 0 235 382 31 11 chr6 26138567 26138758 -163140796 - MIR3 SINE MIR -9 199 5 381 254 117 65 chr6 26140703 26140792 -163138762 + MIR SINE MIR 23 106 -156 1847 122 47 0 chr6 26140792 26141070 -163138484 - AluSx SINE Alu -21 291 1 381 254 117 65 chr6 26141070 26141209 -163138345 + MIR SINE MIR 106 258 -4 788 193 53 48 chr6 26141316 26141503 -163138051 - MER5A DNA MER1_type -1 188 1 182 207 241 0 chr6 26143292 26143350 -163136204 - L2 LINE L2 -19 3294 3223 342 362 69 28 chr6 26143514 26143732 -163135822 + L2 LINE L2 2860 3086 -186 212 304 116 58 chr6 26143813 26143951 -163135603 - L2 LINE L2 -10 3303 3158 288 277 198 0 chr6 26145023 26145124 -163134430 + L2 LINE L2 3188 3308 -5 375 291 55 0 chr6 26145318 26145445 -163134109 - MIR SINE MIR 0 262 129 353 310 23 47 chr6 26145905 26145930 -163133624 + MIR3 SINE MIR 50 74 -134 2202 109 21 47 chr6 26145930 26146315 -163133239 - THE1C LTR MaLR 0 375 1 353 310 23 47 chr6 26146315 26146418 -163133136 + MIR3 SINE MIR 74 175 -33 1688 71 0 9 chr6 26146991 26147201 -163132353 + AluSg/x SINE Alu 85 292 -20 487 303 17 0 chr6 26147209 26147328 -163132226 + MIR3 SINE MIR 36 156 -52 1833 217 25 60 chr6 26147998 26148514 -163131040 - MLT1D LTR MaLR -7 498 1 404 328 49 0 chr6 26148514 26148636 -163130918 + L2 LINE L2 3183 3310 -3 3411 111 25 25 chr6 26148682 26148723 -163130831 - Tigger1 DNA MER2_type -180 2238 2198 2428 61 3 13 chr6 26148723 26149035 -163130519 + AluY SINE Alu 2 310 -1 3411 111 25 25 chr6 26149035 26149543 -163130011 - Tigger1 DNA MER2_type -219 2199 1689 5561 142 18 15 chr6 26149543 26150990 -163128564 - L1PB3 LINE L1 0 6154 4751 1533 233 72 38 chr6 26151082 26151529 -163128025 - MLT1C LTR MaLR 0 467 6 194 278 0 19 chr6 26152721 26152775 -163126779 + L2 LINE L2 3218 3270 -2 6320 128 42 34 chr6 26154176 26154435 -163125119 + HSMAR2 DNA Mariner 1 256 -1046 787 188 88 0 chr6 26154435 26154595 -163124959 + FAM SINE Alu 1 174 -1 6320 128 42 34 chr6 26154595 26155440 -163124114 + HSMAR2 DNA Mariner 256 1115 -187 3362 124 6 0 chr6 26155445 26155952 -163123602 + L1PA10 LINE L1 3906 4415 -1731 4559 97 8 1 chr6 26157601 26158389 -163121165 + L1PA10 LINE L1 5100 5891 -277 30 27 0 0 chr6 26158737 26158774 -163120780 + AT_rich Low_complexity Low_complexity 1 37 0 185 116 0 47 chr6 26158946 26158989 -163120565 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 440 272 82 49 chr6 26159237 26159824 -163119730 - L1PB3 LINE L1 -2165 3981 3370 1673 184 10 26 chr6 26160501 26160810 -163118744 - AluJo SINE Alu -8 304 1 1617 130 86 51 chr6 26160827 26161119 -163118435 - AluSx SINE Alu -8 304 3 410 237 79 13 chr6 26161200 26161352 -163118202 - MER103 DNA DNA -1 165 4 250 327 53 9 chr6 26162362 26162475 -163117079 + MIR SINE MIR 133 250 -12 238 280 10 40 chr6 26162791 26162891 -163116663 - MIR SINE MIR -60 202 106 359 234 64 0 chr6 26163338 26163432 -163116122 + MER110 LTR ERV1 1 100 -391 1539 204 33 25 chr6 26163480 26163872 -163115682 + MER110 LTR ERV1 78 472 -19 452 284 104 35 chr6 26164106 26164307 -163115247 - MIR SINE MIR -26 236 22 477 252 8 65 chr6 26164525 26164648 -163114906 + L1MC/D LINE L1 5496 5614 -556 22 0 0 0 chr6 26164992 26165014 -163114540 + AT_rich Low_complexity Low_complexity 1 22 0 470 298 120 11 chr6 26165845 26166036 -163113518 - MIR SINE MIR -15 247 36 2180 99 3 0 chr6 26166073 26166396 -163113158 + AluSp SINE Alu 1 324 0 2146 89 0 17 chr6 26167483 26167774 -163111780 - AluSx SINE Alu -6 306 21 261 267 0 92 chr6 26168255 26168375 -163111179 - MARNA DNA Mariner -223 363 255 336 229 129 14 chr6 26168870 26169010 -163110544 - L1ME4a LINE L1 -2 6119 5964 665 56 0 0 chr6 26169299 26169388 -163110166 + L1PA3 LINE L1 6067 6155 0 383 0 0 21 chr6 26169445 26169493 -163110061 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 422 226 16 48 chr6 26170071 26170195 -163109359 - MER112 DNA MER1_type -8 252 133 1107 213 25 99 chr6 26170575 26170969 -163108585 - MLT1A1 LTR MaLR 0 365 1 2425 97 0 0 chr6 26172588 26172896 -163106658 + AluSx SINE Alu 1 308 -4 7332 37 0 0 chr6 26175019 26176247 -163103307 - L1PA4 LINE L1 0 6155 4926 8258 173 27 110 chr6 26176247 26178434 -163101120 + L1PB1 LINE L1 2478 4845 -1306 459 0 0 0 chr6 26178434 26178485 -163101069 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 8258 173 27 110 chr6 26178485 26179569 -163099985 + L1PB1 LINE L1 4845 6017 -134 589 101 0 0 chr6 26179569 26179658 -163099896 + Alu SINE Alu 222 310 0 8258 173 27 110 chr6 26179658 26179953 -163099601 + L1PB1 LINE L1 6017 5770 -381 270 0 0 0 chr6 26179953 26179983 -163099571 + (CA)n Simple_repeat Simple_repeat 2 31 0 8258 173 27 110 chr6 26179983 26180282 -163099272 + L1PB1 LINE L1 5769 6091 -60 1071 248 0 7 chr6 26180286 26180585 -163098969 + L1P LINE L1 4862 5158 -988 290 93 19 0 chr6 26180606 26180660 -163098894 + L1PB2 LINE L1 6097 6151 0 32 0 0 0 chr6 26180660 26180692 -163098862 + AT_rich Low_complexity Low_complexity 1 32 0 28 71 0 0 chr6 26180729 26180785 -163098769 + AT_rich Low_complexity Low_complexity 1 56 0 2410 100 31 19 chr6 26180926 26181286 -163098268 - THE1B LTR MaLR 0 364 1 578 139 20 8 chr6 26181352 26181473 -163098081 + L1MB8 LINE L1 5833 5955 -213 2448 140 74 0 chr6 26181489 26181896 -163097658 + Tigger2 DNA MER2_type 2280 2716 -2 988 164 11 98 chr6 26181899 26182174 -163097380 + L1MB8 LINE L1 5923 6173 -5 22 0 0 0 chr6 26183174 26183196 -163096358 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr6 26185037 26185062 -163094492 + (T)n Simple_repeat Simple_repeat 1 25 0 468 0 0 0 chr6 26185103 26185155 -163094399 + (TTTTA)n Simple_repeat Simple_repeat 1 52 0 1655 186 18 4 chr6 26185156 26185431 -163094123 - AluJo SINE Alu -33 279 1 188 358 53 0 chr6 26185983 26186078 -163093476 + MIR SINE MIR 45 144 -64 2067 165 76 2 chr6 26189321 26189714 -163089840 - MSTB LTR MaLR 0 426 5 247 326 34 0 chr6 26189794 26189883 -163089671 - MIR SINE MIR -4 258 167 475 304 91 32 chr6 26189939 26190159 -163089395 + MER115 DNA AcHobo 19 251 -442 28 61 0 0 chr6 26190420 26190469 -163089085 + AT_rich Low_complexity Low_complexity 1 49 0 797 192 113 35 chr6 26191208 26191411 -163088143 + MER20 DNA MER1_type 1 219 0 257 238 30 15 chr6 26191681 26191765 -163087789 - MIR SINE MIR -62 146 64 199 330 124 41 chr6 26192730 26192827 -163086727 - L3 LINE CR1 -69 1508 1404 2289 118 41 8 chr6 26195397 26195760 -163083794 + THE1C LTR MaLR 1 375 0 721 136 40 96 chr6 26195999 26196198 -163083356 + MER53 DNA DNA 2 189 0 2128 183 25 13 chr6 26196856 26197327 -163082227 + L1MB4 LINE L1 5587 6063 -117 2179 136 19 27 chr6 26198022 26198389 -163081165 + THE1B LTR MaLR 1 364 0 373 312 127 9 chr6 26198424 26198645 -163080909 - MIR SINE MIR -14 248 2 348 348 33 16 chr6 26198693 26198877 -163080677 - MIR SINE MIR -56 206 20 289 194 111 37 chr6 26198967 26199075 -163080479 + MER94 DNA DNA 1 116 -18 1277 88 0 0 chr6 26199179 26199338 -163080216 - AluY SINE Alu -6 305 147 367 348 33 16 chr6 26199891 26200075 -163079479 - MIR SINE MIR -56 206 20 289 194 111 37 chr6 26200165 26200273 -163079281 + MER94 DNA DNA 1 116 -18 2265 108 0 7 chr6 26200377 26200684 -163078870 - AluY SINE Alu -6 305 1 1278 62 6 0 chr6 26200684 26200863 -163078691 - L1P3 LINE L1 -681 5491 5312 4489 63 9 0 chr6 26200863 26201434 -163078120 + L1PA7 LINE L1 5569 6147 -7 822 219 35 57 chr6 26201566 26201621 -163077933 + MER58A DNA MER1_type 2 57 -2363 1863 180 0 16 chr6 26201621 26201938 -163077616 - AluJb SINE Alu 0 312 1 822 219 35 57 chr6 26201938 26202110 -163077444 + MER58A DNA MER1_type 57 224 0 220 287 69 11 chr6 26202333 26202420 -163077134 + MIR SINE MIR 170 261 -1 505 345 64 16 chr6 26203990 26204239 -163075315 - MIR SINE MIR 0 262 2 224 326 163 0 chr6 26204528 26204620 -163074934 - MIR SINE MIR -109 153 47 215 225 0 0 chr6 26205654 26205694 -163073860 + (CA)n Simple_repeat Simple_repeat 1 40 0 249 319 0 0 chr6 26206329 26206401 -163073153 - L2 LINE L2 0 3272 3201 283 167 14 14 chr6 26207191 26207263 -163072291 + CT-rich Low_complexity Low_complexity 4 75 0 183 299 78 13 chr6 26207267 26207344 -163072210 - L2 LINE L2 -5 3308 3227 2033 130 16 41 chr6 26209125 26209493 -163070061 + THE1B LTR MaLR 4 362 -2 1976 94 45 4 chr6 26209898 26210184 -163069370 + AluSq SINE Alu 7 303 0 474 315 36 27 chr6 26210187 26210406 -163069148 + HAL1b LINE L1 76 296 -1052 1910 129 59 0 chr6 26210566 26210853 -163068701 + AluSx SINE Alu 1 304 -8 340 302 36 14 chr6 26210949 26211088 -163068466 + L1M4 LINE L1 2923 3064 -3082 306 278 60 60 chr6 26211473 26211624 -163067930 + L1M4 LINE L1 4894 5044 -1102 242 192 0 55 chr6 26212614 26212687 -163066867 + CT-rich Low_complexity Low_complexity 3 71 0 21 0 0 0 chr6 26213091 26213112 -163066442 + AT_rich Low_complexity Low_complexity 1 21 0 530 218 20 0 chr6 26214748 26214849 -163064705 - AluJ SINE Alu -90 222 120 1070 48 5 53 chr6 26214849 26215038 -163064516 + (TTC)n Simple_repeat Simple_repeat 1 180 0 510 112 25 37 chr6 26215040 26215201 -163064353 + CT-rich Low_complexity Low_complexity 1 159 0 1353 28 22 22 chr6 26215439 26215476 -163064078 + (TTC)n Simple_repeat Simple_repeat 1 394 0 1353 28 22 22 chr6 26215476 26215833 -163063721 + (TTC)n Simple_repeat Simple_repeat 1 357 0 735 153 8 0 chr6 26215878 26215996 -163063558 - AluJ SINE Alu -188 124 6 526 270 84 25 chr6 26216102 26216508 -163063046 - L1ME LINE L1 -590 5832 5408 469 300 157 7 chr6 26216525 26216958 -163062596 - L1ME LINE L1 -1038 5368 4871 314 226 66 45 chr6 26216971 26217156 -163062398 - L1ME LINE L1 -4755 1572 1165 330 365 28 86 chr6 26217751 26217848 -163061706 - L1ME LINE L1 -5608 788 687 2304 122 16 24 chr6 26217848 26218225 -163061329 - THE1C LTR MaLR 0 375 2 330 365 28 86 chr6 26218225 26218453 -163061101 - L1ME LINE L1 -5709 687 482 251 393 0 17 chr6 26218501 26218618 -163060936 - MIR3 SINE MIR -6 202 88 407 306 142 31 chr6 26219352 26219676 -163059878 + MLT1J2 LTR MaLR 1 360 -90 994 277 83 31 chr6 26219706 26219937 -163059617 - L1M4 LINE L1 -1793 4353 4136 2272 86 10 3 chr6 26219937 26220240 -163059314 - AluSc SINE Alu -4 305 1 994 277 83 31 chr6 26220240 26220561 -163058993 - L1M4 LINE L1 -2010 4136 3772 805 102 60 6 chr6 26220588 26220755 -163058799 - L1MA7 LINE L1 0 6291 6116 865 121 7 7 chr6 26220786 26220926 -163058628 - LTR18B LTR ERVL -6 608 469 1046 62 0 8 chr6 26220970 26221099 -163058455 - AluSp/q SINE Alu -30 283 156 1852 134 89 78 chr6 26221101 26221548 -163058006 - LTR18B LTR ERVL -162 452 1 3738 153 51 77 chr6 26221548 26223113 -163056441 - L1MA7 LINE L1 -173 6118 4595 811 120 12 36 chr6 26223103 26223270 -163056284 - L1 LINE L1 -1358 4788 4626 * 13547 167 40 10 chr6 26223256 26229014 -163050540 - L1P5 LINE L1 -372 6495 566 247 319 25 34 chr6 26229175 26229294 -163050260 + L2 LINE L2 3155 3272 0 666 308 25 1 chr6 26229648 26229859 -163049695 + MIR SINE MIR 45 259 -3 247 111 0 0 chr6 26231143 26231179 -163048375 + tRNA-Lys-AAG tRNA tRNA 1 36 -40 2074 163 25 33 chr6 26231208 26231768 -163047786 + MLT2A2 LTR ERVL 5 554 0 454 320 121 20 chr6 26231768 26232074 -163047480 - L1MC/D LINE L1 -2193 5615 5279 603 344 47 44 chr6 26232209 26232911 -163046643 - L2 LINE L2 -35 3237 2541 374 191 0 0 chr6 26234439 26234502 -163045052 - MER63 DNA MER1_type -317 745 683 415 259 61 48 chr6 26235793 26235940 -163043614 + MIR SINE MIR 83 231 -31 2291 106 0 3 chr6 26235985 26236287 -163043267 - AluSp SINE Alu -12 301 1 21 36 0 0 chr6 26236287 26236315 -163043239 + AT_rich Low_complexity Low_complexity 1 28 0 304 227 0 45 chr6 26236721 26236809 -163042745 - L1MC4 LINE L1 -1344 6698 6615 333 303 0 0 chr6 26236823 26236912 -163042642 + L1MC4 LINE L1 6615 6703 -1339 341 273 23 0 chr6 26236932 26237020 -163042534 + L1MC4 LINE L1 6614 6703 -1339 308 296 23 0 chr6 26236942 26237030 -163042524 - L1MC4 LINE L1 -1339 6703 6614 * 354 247 47 0 chr6 26237029 26237114 -163042440 + L1MC4 LINE L1 6615 6703 -1339 321 253 72 0 chr6 26237058 26237141 -163042413 - L1MC4 LINE L1 -1339 6703 6615 * 296 143 18 0 chr6 26237146 26237202 -163042352 + (TA)n Simple_repeat Simple_repeat 2 58 0 315 261 11 33 chr6 26237204 26237296 -163042258 + L1MC4 LINE L1 6614 6703 -1339 228 244 11 22 chr6 26237300 26237390 -163042164 + L1MC4 LINE L1 6614 6702 -1340 225 154 0 0 chr6 26237394 26237433 -163042121 + (TA)n Simple_repeat Simple_repeat 1 39 0 21 36 0 0 chr6 26237462 26237490 -163042064 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 26237510 26237539 -163042015 + AT_rich Low_complexity Low_complexity 1 29 0 570 281 72 18 chr6 26237654 26237881 -163041673 - MIR SINE MIR -2 260 20 388 251 56 62 chr6 26238558 26238916 -163040638 + L1MC5 LINE L1 7552 7907 -54 900 223 27 5 chr6 26239357 26239545 -163040009 - MIR SINE MIR -56 206 15 703 188 91 34 chr6 26239546 26239722 -163039832 + MLT2B3 LTR ERVL 1 186 -368 723 58 0 33 chr6 26239722 26239843 -163039711 + (GAAA)n Simple_repeat Simple_repeat 4 120 0 2157 106 10 7 chr6 26241700 26242001 -163037553 + AluSx SINE Alu 1 302 -10 2089 103 0 31 chr6 26242451 26242780 -163036774 - AluSg SINE Alu 0 320 1 236 313 91 40 chr6 26243076 26243175 -163036379 + MIR SINE MIR 16 119 -89 2149 91 7 29 chr6 26243933 26244241 -163035313 + AluSx SINE Alu 5 305 -7 243 61 0 0 chr6 26245548 26245581 -163033973 + (CA)n Simple_repeat Simple_repeat 1 33 0 339 240 0 0 chr6 26246901 26246976 -163032578 - MER45C DNA AcHobo -1 952 878 886 237 19 19 chr6 26247074 26247289 -163032265 - MER45C DNA AcHobo -733 220 6 203 358 124 29 chr6 26248480 26248617 -163030937 - L2 LINE L2 0 3272 3123 196 356 127 29 chr6 26248736 26248941 -163030613 - L2 LINE L2 -225 3047 2823 2307 100 3 25 chr6 26248946 26249266 -163030288 + AluSp SINE Alu 1 313 0 180 211 26 0 chr6 26249403 26249441 -163030113 + L2 LINE L2 3234 3272 0 580 266 44 0 chr6 26249948 26250106 -163029448 - MIR SINE MIR 0 262 98 613 207 36 93 chr6 26250725 26250918 -163028636 + MIR SINE MIR 81 262 0 1678 163 77 9 chr6 26251396 26251722 -163027832 + MER7A DNA MER2_type 1 346 0 314 313 130 58 chr6 26252126 26252525 -163027029 - L1M2 LINE L1 -5920 929 502 205 308 22 11 chr6 26252547 26252638 -163026916 + CT-rich Low_complexity Low_complexity 1 92 0 524 254 68 59 chr6 26255559 26255795 -163023759 - L2 LINE L2 -43 3270 3033 3071 157 31 2 chr6 26256800 26257374 -163022180 - L1PBa LINE L1 -6272 591 1 251 164 49 16 chr6 26257383 26257444 -163022110 - L1MA7 LINE L1 -112 6179 6117 695 283 129 14 chr6 26257457 26258083 -163021471 - L1M4 LINE L1 -2502 3644 2947 211 297 161 17 chr6 26259880 26259998 -163019556 - MIR SINE MIR -40 222 88 23 0 8 0 chr6 26260148 26260208 -163019346 + AT_rich Low_complexity Low_complexity 1 23 0 7241 15 0 0 chr6 26260260 26261127 -163018427 - L1PA2 LINE L1 -2 6153 5287 335 333 64 40 chr6 26261181 26261430 -163018124 - L1MC4 LINE L1 -141 7901 7647 520 325 177 20 chr6 26261434 26261739 -163017815 - L2 LINE L2 -41 3272 2920 819 201 49 22 chr6 26262653 26262837 -163016717 - MER5A DNA MER1_type 0 189 1 3484 117 13 19 chr6 26263878 26264408 -163015146 + MER1A DNA MER1_type 1 527 0 2241 94 7 10 chr6 26264448 26264755 -163014799 + AluY SINE Alu 3 308 -3 568 254 48 0 chr6 26265031 26265196 -163014358 + MER112 DNA MER1_type 81 253 -7 422 297 128 0 chr6 26266055 26266252 -163013302 - MIR SINE MIR 0 262 41 279 79 0 0 chr6 26267094 26267132 -163012422 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 1489 163 30 54 chr6 26267158 26267490 -163012064 + MLT2B3 LTR ERVL 223 546 -8 2111 86 4 7 chr6 26267868 26268146 -163011408 + AluSq SINE Alu 37 313 0 1854 243 34 11 chr6 26270748 26271366 -163008188 + L1M4 LINE L1 4215 4846 -1300 203 357 42 14 chr6 26271392 26271535 -163008019 - L3b LINE CR1 -173 1410 1264 268 345 12 0 chr6 26271569 26271653 -163007901 - MIR3 SINE MIR -46 162 78 198 0 0 0 chr6 26271680 26271702 -163007852 + (ACTG)n Simple_repeat Simple_repeat 1 22 0 4493 133 16 29 chr6 26271797 26272587 -163006967 - L1MA5 LINE L1 -6 6294 5515 198 0 0 0 chr6 26272874 26272896 -163006658 + (A)n Simple_repeat Simple_repeat 1 22 0 5872 61 9 0 chr6 26272931 26273681 -163005873 - L1PA8 LINE L1 -3 6169 5413 709 354 100 31 chr6 26274041 26274968 -163004586 - L2 LINE L2 -58 3255 2255 566 335 131 44 chr6 26275073 26275152 -163004402 + L3 LINE CR1 62 133 -1444 2253 109 7 0 chr6 26275152 26275456 -163004098 + AluSc SINE Alu 1 306 -3 566 335 131 44 chr6 26275456 26275833 -163003721 + L3 LINE CR1 133 558 -1019 473 176 5 186 chr6 26275879 26276089 -163003465 + MER20 DNA MER1_type 43 214 -5 216 333 0 0 chr6 26276324 26276387 -163003167 + MIR3 SINE MIR 101 163 -45 1356 241 126 28 chr6 26276390 26276850 -163002704 + MLT1D LTR MaLR 1 505 0 4111 217 27 80 chr6 26276850 26276953 -163002601 + MLT1D-int LTR MaLR 1 108 -1263 942 230 178 43 chr6 26276953 26277397 -163002157 + MLT1D LTR MaLR 1 504 -1 4111 217 27 80 chr6 26277397 26278695 -163000859 + MLT1D-int LTR MaLR 108 1217 -154 863 199 124 42 chr6 26278701 26279007 -163000547 + MLT1C LTR MaLR 135 465 -2 943 292 147 48 chr6 26279055 26279682 -162999872 + L3 LINE CR1 887 1575 -2 791 199 0 0 chr6 26280471 26280617 -162998937 + AluJb SINE Alu 1 146 -166 180 0 0 0 chr6 26280681 26280701 -162998853 + (CAAAT)n Simple_repeat Simple_repeat 2 21 0 2061 141 7 10 chr6 26281188 26281492 -162998062 + AluSx SINE Alu 1 303 -9 1965 150 0 3 chr6 26282040 26282346 -162997208 + AluJb SINE Alu 1 305 -7 926 227 12 16 chr6 26282527 26282778 -162996776 + MER76 LTR ERV 1 250 -438 906 228 25 40 chr6 26282846 26283122 -162996432 + MER76 LTR ERV 384 655 -33 332 359 61 0 chr6 26283758 26283889 -162995665 - MIR SINE MIR -111 151 13 11961 183 15 36 chr6 26283995 26284046 -162995508 - L1PB3 LINE L1 -313 5841 5790 315 0 0 0 chr6 26284046 26284081 -162995473 + (TG)n Simple_repeat Simple_repeat 2 36 0 11961 183 15 36 chr6 26284081 26285122 -162994432 - L1PB3 LINE L1 -364 5790 4728 279 78 98 0 chr6 26285122 26285173 -162994381 + MADE1 DNA Mariner 1 56 -24 11961 183 15 36 chr6 26285173 26285973 -162993581 - L1PB3 LINE L1 -1426 4728 3912 2425 87 0 0 chr6 26285973 26286284 -162993270 - AluY SINE Alu 0 311 1 11961 183 15 36 chr6 26286284 26287947 -162991607 - L1PB3 LINE L1 -2242 3912 2313 258 32 0 0 chr6 26288009 26288040 -162991514 + (CA)n Simple_repeat Simple_repeat 2 32 0 204 40 0 0 chr6 26289209 26289234 -162990320 + (A)n Simple_repeat Simple_repeat 1 25 0 2596 50 0 0 chr6 26289234 26289534 -162990020 + AluY SINE Alu 1 300 -11 839 251 0 0 chr6 26290155 26290326 -162989228 + MER45A DNA AcHobo 1 171 -7 509 236 149 9 chr6 26290437 26290748 -162988806 + MLT1I LTR MaLR 1 409 0 2265 85 4 0 chr6 26292049 26292353 -162987201 + AluSx SINE Alu 3 307 0 193 212 0 0 chr6 26292860 26292893 -162986661 + MIR SINE MIR 1 33 -229 1854 126 32 0 chr6 26292896 26293198 -162986356 + AluSp SINE Alu 1 311 0 42488 35 0 2 chr6 26293355 26299514 -162980040 + L1PA3 LINE L1 6 6152 -3 182 37 37 0 chr6 26300845 26300872 -162978682 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 294 357 91 66 chr6 26300936 26301345 -162978209 - L2 LINE L2 -50 3222 2804 1808 144 0 11 chr6 26301684 26301994 -162977560 + AluSx SINE Alu 1 307 0 1980 202 26 32 chr6 26302810 26303276 -162976278 + MLT1C LTR MaLR 5 467 0 1870 117 8 11 chr6 26303565 26303830 -162975724 + AluSx SINE Alu 39 302 -10 206 213 43 0 chr6 26303945 26303992 -162975562 + GA-rich Low_complexity Low_complexity 4 52 0 209 305 170 7 chr6 26304443 26304584 -162974970 - MIR3 SINE MIR -6 202 39 4867 124 6 36 chr6 26304600 26304864 -162974690 - L1PA16 LINE L1 -1 6165 5895 1977 127 18 3 chr6 26304864 26305147 -162974407 + AluSx SINE Alu 1 287 -25 4867 124 6 36 chr6 26305147 26305721 -162973833 - L1PA16 LINE L1 -271 5895 5352 180 0 0 0 chr6 26305721 26305741 -162973813 + (T)n Simple_repeat Simple_repeat 1 20 0 1950 123 21 7 chr6 26305896 26306180 -162973374 - AluSq SINE Alu -25 288 1 3525 196 85 18 chr6 26306180 26306845 -162972709 - L1PA16 LINE L1 -784 5362 4620 2608 62 0 0 chr6 26306845 26307152 -162972402 + AluY SINE Alu 1 307 -4 3525 196 85 18 chr6 26307152 26307378 -162972176 - L1PA16 LINE L1 -1526 4620 4411 237 33 0 0 chr6 26307890 26307920 -162971634 + (CA)n Simple_repeat Simple_repeat 1 30 0 293 270 22 0 chr6 26307993 26308082 -162971472 + MIR SINE MIR 172 262 0 285 336 90 0 chr6 26308216 26308338 -162971216 - MIR SINE MIR -89 173 41 184 284 12 49 chr6 26308423 26308504 -162971050 - L2 LINE L2 -181 3091 3014 189 294 92 55 chr6 26308646 26308755 -162970799 - L2 LINE L2 -1 3312 3200 1157 207 46 65 chr6 26308866 26309238 -162970316 + MLT1A1 LTR MaLR 1 365 0 518 286 49 27 chr6 26309887 26310072 -162969482 - MIR SINE MIR -44 218 30 242 290 0 16 chr6 26310141 26310211 -162969343 + MIR SINE MIR 41 108 -103 464 147 0 21 chr6 26311177 26311272 -162968282 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 183 42 0 0 chr6 26311290 26311314 -162968240 + (GA)n Simple_repeat Simple_repeat 2 25 0 25 0 0 0 chr6 26311575 26311600 -162967954 + AT_rich Low_complexity Low_complexity 1 25 0 315 242 0 0 chr6 26312342 26312408 -162967146 - MIR SINE MIR -63 199 134 3451 107 8 8 chr6 26312770 26313277 -162966277 - MER84 LTR ERV1 0 507 1 604 287 136 16 chr6 26313867 26314494 -162965060 + L1M4 LINE L1 4561 5262 -884 231 209 0 0 chr6 26364617 26364660 -162914894 - L2 LINE L2 -4 3309 3267 293 300 127 0 chr6 26364742 26364852 -162914702 + L2 LINE L2 3149 3272 0 1742 152 27 24 chr6 26365192 26365489 -162914065 + AluJo SINE Alu 6 303 -9 318 132 0 0 chr6 26366697 26366750 -162912804 + (T)n Simple_repeat Simple_repeat 1 53 0 1704 182 18 0 chr6 26367914 26368243 -162911311 - L1PB4 LINE L1 0 6156 5822 282 214 157 0 chr6 26368347 26368417 -162911137 - LTR37A LTR ERV1 -345 81 1 1627 157 47 50 chr6 26368436 26368568 -162910986 - MER31-int LTR ERV1 -727 4209 4078 2413 86 0 0 chr6 26368568 26368869 -162910685 - AluY SINE Alu -10 301 1 1627 157 47 50 chr6 26368869 26369055 -162910499 - MER31-int LTR ERV1 -858 4078 3892 371 191 0 0 chr6 26369063 26369126 -162910428 - Charlie3 DNA MER1_type -25 2685 2623 247 209 0 0 chr6 26369123 26369166 -162910388 - Charlie3 DNA MER1_type -2612 98 56 * 4288 183 50 72 chr6 26369182 26370323 -162909231 - MER31-int LTR ERV1 -1032 3904 2790 2305 92 0 3 chr6 26370323 26370629 -162908925 + AluSq SINE Alu 1 305 -8 4288 183 50 72 chr6 26370629 26370713 -162908841 - MER31-int LTR ERV1 -2146 2790 2706 1374 237 53 16 chr6 26371863 26372411 -162907143 + L1ME3A LINE L1 2635 3202 -2944 6034 132 93 13 chr6 26372605 26373745 -162905809 - Tigger3b DNA MER2_type 0 1231 1 247 239 75 15 chr6 26373754 26373821 -162905733 + Tigger5 DNA MER2_type 8 78 -2245 307 241 228 0 chr6 26373902 26374047 -162905507 + L1ME3A LINE L1 3762 3939 -2207 * 2104 268 85 29 chr6 26374041 26375563 -162903991 + L1ME3A LINE L1 4556 6165 -5 25 65 0 0 chr6 26375564 26375610 -162903944 + AT_rich Low_complexity Low_complexity 1 46 0 237 349 34 48 chr6 26376456 26376602 -162902952 - L2 LINE L2 -2 3270 3127 331 317 192 30 chr6 26376881 26377152 -162902402 - L2 LINE L2 -552 2762 2448 647 167 3 0 chr6 26377221 26377335 -162902219 - LTR12 LTR ERV1 -133 581 67 250 278 11 0 chr6 26377335 26377425 -162902129 - LTR30 LTR ERV1 -79 643 553 1690 83 3 129 chr6 26377426 26377751 -162901803 - LTR12 LTR ERV1 -429 285 2 2740 106 97 5 chr6 26377776 26378210 -162901344 + MER101 LTR ERV1 1 474 0 21 36 0 0 chr6 26379190 26379218 -162900336 + AT_rich Low_complexity Low_complexity 1 28 0 1076 292 51 39 chr6 26380550 26380964 -162898590 + LTR16C LTR ERVL 73 491 0 261 326 0 0 chr6 26380968 26381066 -162898488 + HAL1 LINE L1 1495 1592 -915 12956 154 29 55 chr6 26381076 26384185 -162895369 + L1MA3 LINE L1 17 3815 -3750 913 156 0 0 chr6 26384185 26384326 -162895228 + FLAM_C SINE Alu 1 141 -2 12956 154 29 55 chr6 26384326 26385166 -162894388 + L1MA3 LINE L1 3815 4676 -2889 6425 131 33 4 chr6 26385166 26386624 -162892930 + L1MA3 LINE L1 6216 7724 0 812 304 32 6 chr6 26386636 26386949 -162892605 + HAL1 LINE L1 1583 1903 -604 252 236 0 0 chr6 26386961 26387016 -162892538 + MIR SINE MIR 197 251 -11 418 204 0 21 chr6 26387242 26387335 -162892219 - MER103 DNA DNA -75 91 1 2137 146 0 0 chr6 26387371 26387679 -162891875 + AluSx SINE Alu 1 308 -4 2013 118 0 4 chr6 26387768 26388038 -162891516 - AluSx SINE Alu -43 269 1 194 354 15 0 chr6 26388698 26388763 -162890791 + L2 LINE L2 3206 3271 -1 1968 122 49 0 chr6 26390106 26390433 -162889121 + AluJb SINE Alu 1 341 0 3063 119 14 4 chr6 26391647 26392160 -162887394 + L1P5 LINE L1 5260 5777 -379 292 297 11 0 chr6 26392163 26392254 -162887300 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 192 40 0 0 chr6 26392424 26392449 -162887105 + (GGGTG)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr6 26392673 26392695 -162886859 + AT_rich Low_complexity Low_complexity 1 22 0 364 242 83 125 chr6 26393579 26393855 -162885699 - MIR SINE MIR 0 262 4 529 211 0 0 chr6 26394387 26394482 -162885072 + FLAM_A SINE Alu 1 95 -47 1453 193 3 24 chr6 26394482 26394772 -162884782 + AluJo SINE Alu 26 309 -3 466 333 59 34 chr6 26394858 26395095 -162884459 + MIR SINE MIR 12 254 -8 2112 132 0 13 chr6 26395702 26396005 -162883549 - AluSx SINE Alu -13 299 1 804 194 0 0 chr6 26396509 26396638 -162882916 - FLAM_A SINE Alu -4 129 1 204 40 0 0 chr6 26396649 26396674 -162882880 + (A)n Simple_repeat Simple_repeat 1 25 0 257 250 113 0 chr6 26396997 26397077 -162882477 - MIR SINE MIR -54 208 120 2188 110 13 0 chr6 26397408 26397707 -162881847 - AluSx SINE Alu -9 303 1 442 219 207 39 chr6 26399052 26399308 -162880246 + L2 LINE L2 3015 3313 0 529 241 211 77 chr6 26399350 26399490 -162880064 + L2 LINE L2 2560 2680 -633 2331 82 0 20 chr6 26399490 26399794 -162879760 + AluSg1 SINE Alu 1 298 -11 529 241 211 77 chr6 26399794 26400203 -162879351 + L2 LINE L2 2680 3216 -97 198 103 0 0 chr6 26400203 26400232 -162879322 + (CA)n Simple_repeat Simple_repeat 1 29 0 529 241 211 77 chr6 26400232 26400343 -162879211 + L2 LINE L2 3216 3311 -2 300 292 117 50 chr6 26400490 26400730 -162878824 + L2 LINE L2 3013 3268 -45 2010 151 0 0 chr6 26401475 26401773 -162877781 + AluJb SINE Alu 1 298 -14 289 338 112 39 chr6 26401832 26402314 -162877240 + L2 LINE L2 2288 2804 -510 589 158 0 0 chr6 26402511 26402612 -162876942 - AluSg/x SINE Alu -3 306 206 346 319 76 19 chr6 26402621 26402778 -162876776 + MIR SINE MIR 89 254 -8 189 268 0 0 chr6 26403511 26403552 -162876002 + L2 LINE L2 3231 3271 -1 2870 6 0 0 chr6 26405146 26405457 -162874097 - AluYa5 SINE Alu 0 311 1 2810 13 0 0 chr6 26406642 26406949 -162872605 - AluYa5 SINE Alu -4 307 1 791 182 0 0 chr6 26407751 26407872 -162871682 + FLAM_A SINE Alu 1 121 -12 1066 187 4 52 chr6 26407880 26408110 -162871444 - MER20 DNA MER1_type 0 219 1 746 110 110 17 chr6 26408273 26408391 -162871163 - FLAM_C SINE Alu -4 129 1 14120 183 12 0 chr6 26408651 26409242 -162870312 + L1PA13 LINE L1 2438 3020 -3143 1880 150 17 7 chr6 26409242 26409529 -162870025 + AluJb SINE Alu 3 292 -20 14120 183 12 0 chr6 26409529 26412644 -162866910 + L1PA13 LINE L1 3020 6162 -1 419 298 93 24 chr6 26412864 26413112 -162866442 + L1MC/D LINE L1 4936 5200 -946 2220 137 12 9 chr6 26413168 26413504 -162866050 - MER1B DNA MER1_type 0 337 1 872 291 20 12 chr6 26413592 26413843 -162865711 + MIR SINE MIR 1 253 -9 493 278 146 9 chr6 26413944 26414156 -162865398 + L1MC/D LINE L1 5513 5753 -2055 3144 118 29 4 chr6 26414156 26414646 -162864908 + L1PA16 LINE L1 5648 6149 -17 308 65 43 0 chr6 26414693 26414739 -162864815 + LTR54 LTR ERV1 402 449 -61 2173 119 9 25 chr6 26414796 26415114 -162864440 + AluSq SINE Alu 1 313 0 1545 178 44 30 chr6 26415274 26415572 -162863982 + AluJb SINE Alu 3 304 -8 2533 53 0 0 chr6 26416252 26416556 -162862998 + AluY SINE Alu 1 304 -7 531 222 106 48 chr6 26416628 26416817 -162862737 - MIR SINE MIR 0 262 63 390 355 16 0 chr6 26417644 26417768 -162861786 - L2 LINE L2 -4 3268 3143 25 0 0 0 chr6 26417787 26417812 -162861742 + AT_rich Low_complexity Low_complexity 1 25 0 2522 93 0 0 chr6 26418362 26418672 -162860882 - AluSx SINE Alu -2 310 1 629 297 101 14 chr6 26418701 26418997 -162860557 + L3 LINE CR1 1141 1462 -115 264 241 0 0 chr6 26419191 26419245 -162860309 - L2 LINE L2 -86 3186 3133 385 331 58 46 chr6 26419573 26419833 -162859721 + MLT1K LTR MaLR 129 391 -197 1804 145 21 28 chr6 26421962 26422251 -162857303 + AluJo SINE Alu 1 287 -25 2025 163 0 0 chr6 26422752 26423058 -162856496 + AluSx SINE Alu 1 306 -6 626 286 83 14 chr6 26423382 26423629 -162855925 + MIR SINE MIR 2 262 0 2004 140 3 0 chr6 26424987 26425273 -162854281 + AluSx SINE Alu 1 287 -25 291 261 137 76 chr6 26425380 26426061 -162853493 + L1MEd LINE L1 300 1021 -5098 615 124 105 0 chr6 26426069 26426174 -162853380 - AluSg/x SINE Alu -3 309 194 21 0 0 0 chr6 26426373 26426394 -162853160 + AT_rich Low_complexity Low_complexity 1 21 0 2498 87 0 0 chr6 26426549 26426861 -162852693 - AluSx SINE Alu 0 312 1 347 108 0 302 chr6 26427248 26427377 -162852177 + FRAM SINE Alu 56 145 -21 183 146 0 0 chr6 26427383 26427424 -162852130 + (TA)n Simple_repeat Simple_repeat 1 41 0 316 267 100 86 chr6 26427770 26427867 -162851687 + MIR SINE MIR 2 96 -166 2298 105 3 16 chr6 26427867 26428182 -162851372 + AluSq SINE Alu 1 311 -2 316 267 100 86 chr6 26428182 26428294 -162851260 + MIR SINE MIR 96 214 -48 447 322 43 43 chr6 26428369 26428577 -162850977 + MIR SINE MIR 53 260 -2 194 224 35 0 chr6 26431727 26431785 -162847769 + CT-rich Low_complexity Low_complexity 3 62 0 4181 138 5 1 chr6 26431799 26432472 -162847082 - L1PA16 LINE L1 -15 6151 5477 995 188 0 24 chr6 26432493 26432701 -162846853 - L1PA15 LINE L1 -7 6158 5956 3576 186 155 17 chr6 26432701 26432850 -162846704 - L1PA16 LINE L1 -695 5471 5344 2148 134 3 0 chr6 26432850 26433149 -162846405 - AluSq SINE Alu -13 300 1 3576 186 155 17 chr6 26433149 26434499 -162845055 - L1PA16 LINE L1 -822 5344 3720 465 314 162 34 chr6 26434820 26435228 -162844326 - L3 LINE CR1 -729 848 389 404 384 42 3 chr6 26435176 26435507 -162844047 + L2 LINE L2 2435 2778 -536 * 341 320 102 87 chr6 26435697 26435972 -162843582 + L2 LINE L2 2989 3267 -5 180 77 0 0 chr6 26437052 26437078 -162842476 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 190 265 0 0 chr6 26437082 26437131 -162842423 - MIR SINE MIR -5 257 209 271 333 101 0 chr6 26437283 26437382 -162842172 + MIR3 SINE MIR 90 198 -10 306 73 0 0 chr6 26437831 26437872 -162841682 + (TG)n Simple_repeat Simple_repeat 2 42 0 181 323 108 0 chr6 26438565 26438658 -162840896 - L2 LINE L2 -41 3272 3170 590 280 202 27 chr6 26439119 26439204 -162840350 + L2 LINE L2 2919 2988 -325 1819 156 3 11 chr6 26439204 26439517 -162840037 - AluJo SINE Alu 0 311 1 590 280 202 27 chr6 26439517 26439762 -162839792 + L2 LINE L2 2988 3308 -5 1815 212 60 19 chr6 26440325 26440810 -162838744 + MLT1D LTR MaLR 1 505 0 454 316 153 26 chr6 26442886 26443342 -162836212 + L2 LINE L2 2241 2754 -560 243 307 40 0 chr6 26443611 26443686 -162835868 + L2 LINE L2 3152 3229 -43 219 289 77 0 chr6 26444918 26444970 -162834584 - L2 LINE L2 -48 3224 3169 186 277 0 84 chr6 26445103 26445186 -162834368 - L2 LINE L2 -177 3095 3020 360 119 0 0 chr6 26445619 26445678 -162833876 + (TGAA)n Simple_repeat Simple_repeat 2 60 0 349 313 112 0 chr6 26448054 26448188 -162831366 + MIR SINE MIR 34 182 -80 1345 144 111 78 chr6 26448786 26448950 -162830604 + THE1C LTR MaLR 1 158 -217 693 93 0 0 chr6 26448950 26449057 -162830497 + (CTCG)n Simple_repeat Simple_repeat 2 108 0 1345 144 111 78 chr6 26449057 26449252 -162830302 + THE1C LTR MaLR 158 372 -3 2831 182 64 49 chr6 26449392 26450112 -162829442 - MER45B DNA AcHobo 0 1040 310 907 193 25 35 chr6 26450121 26450323 -162829231 - MER45B DNA AcHobo -838 202 3 304 252 89 49 chr6 26450323 26450445 -162829109 + MER112 DNA MER1_type 128 254 -6 477 338 152 0 chr6 26450456 26450666 -162828888 + MIR SINE MIR 20 261 -1 25 0 0 0 chr6 26451124 26451149 -162828405 + AT_rich Low_complexity Low_complexity 1 25 0 1609 192 20 3 chr6 26451149 26451446 -162828108 + AluJo SINE Alu 1 302 -10 647 347 133 25 chr6 26453364 26454053 -162825501 + L2 LINE L2 1752 2515 -799 328 369 92 10 chr6 26454604 26454810 -162824744 + L2 LINE L2 2836 3058 -214 181 279 59 15 chr6 26454942 26455010 -162824544 + L2 LINE L2 3186 3256 -16 1916 142 21 21 chr6 26457671 26458008 -162821546 - MER1B DNA MER1_type -1 338 2 2199 184 29 45 chr6 26458037 26458549 -162821005 - MLT1D LTR MaLR 0 505 2 1892 323 131 22 chr6 26458764 26460096 -162819458 - L2 LINE L2 -50 3263 1787 2589 62 3 3 chr6 26461266 26461575 -162817979 + AluSx SINE Alu 1 309 -3 421 273 131 21 chr6 26462504 26462646 -162816908 + L1ME4a LINE L1 5804 5929 -192 438 20 0 0 chr6 26462646 26462697 -162816857 + (GA)n Simple_repeat Simple_repeat 1 51 0 421 273 131 21 chr6 26462697 26462836 -162816718 + L1ME4a LINE L1 5929 6116 -5 263 104 21 0 chr6 26463545 26463593 -162815961 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 319 378 13 42 chr6 26463884 26464122 -162815432 + L3b LINE CR1 1326 1556 -27 317 217 217 26 chr6 26464122 26464274 -162815280 + L3b LINE CR1 1201 1381 -202 29068 116 14 58 chr6 26465324 26471742 -162807812 - L1PA7 LINE L1 -13 6141 13 367 278 37 0 chr6 26473119 26473227 -162806327 - MIR SINE MIR 0 262 151 1823 155 0 14 chr6 26473229 26473525 -162806029 + AluSx SINE Alu 1 292 -20 213 121 0 0 chr6 26473549 26473582 -162805972 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 271 215 19 47 chr6 26473721 26473828 -162805726 + HAL1 LINE L1 2029 2132 -375 1850 196 63 42 chr6 26474044 26474189 -162805365 + LTR40a LTR ERVL 3 143 -376 940 231 33 0 chr6 26474189 26474401 -162805153 + MER20 DNA MER1_type 1 219 0 1850 196 63 42 chr6 26474401 26474489 -162805065 + LTR40a LTR ERVL 143 228 -291 438 148 11 0 chr6 26474489 26474577 -162804977 + L1MB4 LINE L1 6088 6176 -4 1850 196 63 42 chr6 26474577 26474848 -162804706 + LTR40a LTR ERVL 228 519 0 354 281 70 47 chr6 26475685 26475856 -162803698 - HAL1 LINE L1 -1 2506 2332 45 45 0 0 chr6 26475918 26475984 -162803570 + AT_rich Low_complexity Low_complexity 1 66 0 3797 253 111 48 chr6 26476126 26478259 -162801295 - HAL1 LINE L1 -237 2270 4 1329 25 0 6 chr6 26479419 26479578 -162799976 - L1PA5 LINE L1 -8 6146 5989 465 35 0 0 chr6 26479578 26479636 -162799918 + L1PA4 LINE L1 5890 5947 -208 31 0 0 0 chr6 26481386 26481417 -162798137 + AT_rich Low_complexity Low_complexity 1 31 0 207 301 36 24 chr6 26481733 26481816 -162797738 + MER5A DNA MER1_type 11 94 -95 185 321 36 12 chr6 26481783 26481867 -162797687 - MER5A DNA MER1_type -87 102 17 * 532 288 42 42 chr6 26481969 26482181 -162797373 + MIR SINE MIR 50 261 -1 951 126 77 13 chr6 26482880 26483164 -162796390 - MLT1B LTR MaLR 0 390 7 458 267 52 7 chr6 26483518 26483653 -162795901 + MIR SINE MIR 71 211 -51 180 311 0 0 chr6 26483953 26483998 -162795556 + L3 LINE CR1 891 935 -642 444 37 0 0 chr6 26484216 26484270 -162795284 + (TG)n Simple_repeat Simple_repeat 1 54 0 2078 117 16 10 chr6 26485353 26485660 -162793894 - AluSx SINE Alu -3 309 1 288 356 73 26 chr6 26485794 26485985 -162793569 + MIR SINE MIR 28 227 -35 4369 184 41 13 chr6 26486622 26488460 -162791094 - L1MB3 LINE L1 0 6183 4296 212 290 161 11 chr6 26489208 26489335 -162790219 - MIR SINE MIR -23 185 45 2323 80 0 13 chr6 26489368 26489680 -162789874 + AluY SINE Alu 1 308 -3 371 285 244 0 chr6 26489780 26489952 -162789602 - MIR SINE MIR -31 231 18 2448 73 0 3 chr6 26489984 26490285 -162789269 - AluY SINE Alu -11 300 1 2448 77 3 3 chr6 26490374 26490685 -162788869 - AluY SINE Alu 0 311 1 613 215 224 5 chr6 26490979 26491184 -162788370 + MIR SINE MIR 10 259 -3 2628 129 42 4 chr6 26492997 26493454 -162786100 + L1MA8 LINE L1 5808 6281 -10 1414 191 14 24 chr6 26493646 26493939 -162785615 - AluJo SINE Alu -22 290 1 23 0 0 0 chr6 26495004 26495027 -162784527 + AT_rich Low_complexity Low_complexity 1 23 0 21 82 0 0 chr6 26496470 26496519 -162783035 + AT_rich Low_complexity Low_complexity 1 49 0 2024 101 36 4 chr6 26496928 26497236 -162782318 - AluSq SINE Alu 0 319 3 462 288 120 20 chr6 26501208 26501445 -162778109 - MIR SINE MIR 0 262 1 261 226 0 48 chr6 26501550 26501612 -162777942 + L2 LINE L2 3246 3304 -9 2156 135 0 0 chr6 26501749 26502052 -162777502 + AluSx SINE Alu 1 303 -9 267 254 0 0 chr6 26502272 26502335 -162777219 - L1MC4a LINE L1 -1909 5899 5837 716 156 0 33 chr6 26502356 26502478 -162777076 - FRAM SINE Alu -14 162 45 2178 122 3 6 chr6 26503293 26503605 -162775949 + AluSq SINE Alu 1 311 -2 558 79 0 0 chr6 26504043 26504119 -162775435 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 609 286 62 37 chr6 26505862 26506376 -162773178 + L1MCc LINE L1 1116 1796 -4889 1587 247 81 34 chr6 26506381 26506606 -162772948 + L1MCc LINE L1 2335 2548 -4574 2086 98 4 4 chr6 26506606 26506883 -162772671 + AluSg SINE Alu 18 294 -16 1587 247 81 34 chr6 26506883 26507383 -162772171 + L1MCc LINE L1 2548 3094 -4028 791 168 0 40 chr6 26507390 26507539 -162772015 + FLAM_C SINE Alu 1 143 0 333 320 44 61 chr6 26507994 26508222 -162771332 + L2 LINE L2 2070 2293 -1021 199 298 85 0 chr6 26509010 26509104 -162770450 - MIR SINE MIR -7 255 154 246 316 164 6 chr6 26509152 26509323 -162770231 - MIR SINE MIR -56 206 9 2356 135 41 21 chr6 26509426 26509862 -162769692 + LTR7 LTR ERV1 1 445 -5 28 0 0 0 chr6 26509991 26510019 -162769535 + AT_rich Low_complexity Low_complexity 1 28 0 251 323 79 8 chr6 26511335 26511462 -162768092 - L2 LINE L2 -3 3310 3175 211 301 131 20 chr6 26511500 26511653 -162767901 + MIR3 SINE MIR 24 193 -15 1789 182 3 16 chr6 26511734 26512047 -162767507 + AluJo SINE Alu 1 309 -3 22 0 0 0 chr6 26512716 26512738 -162766816 + AT_rich Low_complexity Low_complexity 1 22 0 474 351 7 0 chr6 26513031 26513182 -162766372 - L2 LINE L2 -2 3311 3160 1135 306 184 14 chr6 26513207 26514037 -162765517 - L2 LINE L2 -412 2902 1932 463 303 155 28 chr6 26514151 26514544 -162765010 + L1ME4a LINE L1 5528 5970 -151 209 280 0 0 chr6 26514602 26514652 -162764902 + (CATA)n Simple_repeat Simple_repeat 3 52 0 24 103 0 0 chr6 26514718 26514805 -162764749 + AT_rich Low_complexity Low_complexity 1 87 0 2131 251 38 45 chr6 26514806 26515915 -162763639 + L1MC4 LINE L1 4766 5396 -750 5330 136 10 27 chr6 26515952 26516321 -162763233 - L1PB4 LINE L1 -8 6148 5774 378 0 0 0 chr6 26516321 26516363 -162763191 + (TG)n Simple_repeat Simple_repeat 2 43 0 5330 136 10 27 chr6 26516363 26517051 -162762503 - L1PB4 LINE L1 -382 5774 5106 330 181 0 0 chr6 26517071 26517143 -162762411 - L1PB4 LINE L1 -1013 5133 5062 * 4153 214 47 68 chr6 26517139 26517906 -162761648 + L1MC4 LINE L1 5847 6629 -1413 2119 120 7 0 chr6 26517906 26518189 -162761365 - AluSx SINE Alu -27 285 1 4153 214 47 68 chr6 26518189 26519030 -162760524 + L1MC4 LINE L1 6629 7486 -556 3172 190 48 10 chr6 26519030 26519714 -162759840 + MER67C LTR ERV1 1 710 0 4153 214 47 68 chr6 26519714 26519772 -162759782 + L1MC4 LINE L1 7486 7464 -578 5719 64 16 11 chr6 26519772 26520534 -162759020 + MER4E LTR ERV1 1 766 0 4153 214 47 68 chr6 26520534 26520621 -162758933 + L1MC4 LINE L1 7463 7550 -492 721 217 32 19 chr6 26520621 26520778 -162758776 + AluSg/x SINE Alu 137 295 -17 255 74 246 0 chr6 26520778 26520830 -162758724 + L1MD3 LINE L1 7461 7701 -280 1011 221 60 15 chr6 26520873 26521140 -162758414 + L1MC4a LINE L1 7530 7808 0 1526 226 3 0 chr6 26522159 26522468 -162757086 + AluJo SINE Alu 1 310 -2 22 0 0 0 chr6 26523347 26523369 -162756185 + AT_rich Low_complexity Low_complexity 1 22 0 748 179 0 12 chr6 26523634 26523802 -162755752 + GA-rich Low_complexity Low_complexity 3 168 0 1882 152 3 7 chr6 26524136 26524432 -162755122 + AluJb SINE Alu 4 298 -14 208 297 117 27 chr6 26524506 26524617 -162754937 + L2 LINE L2 3142 3262 -10 297 0 0 0 chr6 26525011 26525044 -162754510 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2225 88 0 3 chr6 26525047 26525331 -162754223 - AluSq SINE Alu -29 284 2 206 356 14 14 chr6 26526559 26526632 -162752922 - MIR SINE MIR -186 76 4 22 0 0 0 chr6 26527630 26527652 -162751902 + AT_rich Low_complexity Low_complexity 1 22 0 254 374 27 32 chr6 26528234 26528421 -162751133 + L3b LINE CR1 1106 1291 -292 858 166 0 14 chr6 26528856 26528995 -162750559 - AluJb SINE Alu -13 299 163 21 0 0 0 chr6 26529203 26529224 -162750330 + AT_rich Low_complexity Low_complexity 1 21 0 1006 289 109 29 chr6 26529762 26530313 -162749241 + MLT1G1 LTR MaLR 1 595 0 561 342 27 78 chr6 26530424 26530833 -162748721 - L2 LINE L2 0 3272 2885 303 356 38 0 chr6 26530833 26530965 -162748589 - MLT1G1 LTR MaLR -405 190 54 396 310 124 54 chr6 26530968 26531020 -162748534 - L2 LINE L2 -458 2856 2809 537 299 75 17 chr6 26531020 26531261 -162748293 + MER112 DNA MER1_type 2 256 0 396 310 124 54 chr6 26531261 26531669 -162747885 - L2 LINE L2 -505 2809 2364 1154 161 62 21 chr6 26532018 26532261 -162747293 - THE1C LTR MaLR -122 253 1 483 282 0 103 chr6 26532437 26532671 -162746883 + LTR67 LTR ERVL 348 557 0 399 296 26 20 chr6 26533148 26533300 -162746254 - MIR SINE MIR -12 250 98 24 0 0 0 chr6 26533514 26533538 -162746016 + AT_rich Low_complexity Low_complexity 1 24 0 2171 116 0 13 chr6 26533819 26534122 -162745432 + AluSx SINE Alu 1 299 -13 451 205 45 36 chr6 26534411 26534523 -162745031 + MIR SINE MIR 120 232 -30 615 316 128 67 chr6 26534675 26534968 -162744586 + L2 LINE L2 2391 2665 -607 2182 102 7 3 chr6 26534968 26535252 -162744302 - AluSq SINE Alu -27 286 2 615 316 128 67 chr6 26535252 26535781 -162743773 + L2 LINE L2 2665 3272 0 366 381 12 12 chr6 26536421 26536581 -162742973 + L2 LINE L2 2904 3063 -209 21 36 0 0 chr6 26536620 26536648 -162742906 + AT_rich Low_complexity Low_complexity 1 28 0 2091 136 0 0 chr6 26537041 26537335 -162742219 - AluSx SINE Alu -18 294 1 21 0 0 0 chr6 26537821 26537842 -162741712 + AT_rich Low_complexity Low_complexity 1 21 0 192 40 0 0 chr6 26538258 26538283 -162741271 + (CA)n Simple_repeat Simple_repeat 2 26 0 2136 97 20 10 chr6 26539357 26539657 -162739897 - AluY SINE Alu -8 303 1 1821 144 50 19 chr6 26540146 26540506 -162739048 - L1MA7 LINE L1 -1 6290 5920 573 152 0 0 chr6 26540514 26540613 -162738941 + L1MA7 LINE L1 5802 5900 -400 1776 129 96 0 chr6 26542206 26542478 -162737076 + AluSx SINE Alu 1 298 -14 2103 116 10 3 chr6 26542783 26543076 -162736478 + AluSx SINE Alu 3 297 -15 236 238 148 40 chr6 26543620 26543703 -162735851 + L2 LINE L2 3198 3295 -18 1309 185 108 16 chr6 26543703 26544017 -162735537 - MER2 DNA MER2_type 0 344 2 236 238 148 40 chr6 26544017 26544034 -162735520 + L2 LINE L2 3295 3309 -4 259 226 48 0 chr6 26544371 26544433 -162735121 - LTR65 LTR ERV1 -6 663 599 574 253 25 0 chr6 26544700 26544858 -162734696 - LTR65 LTR ERV1 -505 164 3 299 337 61 25 chr6 26545074 26545237 -162734317 + L2 LINE L2 3078 3246 -26 2254 89 0 16 chr6 26548131 26548434 -162731120 + AluSg SINE Alu 1 298 -12 25 31 0 0 chr6 26549984 26550016 -162729538 + AT_rich Low_complexity Low_complexity 1 32 0 240 312 153 37 chr6 26550296 26550485 -162729069 + L3b LINE CR1 1353 1563 -20 24 77 0 0 chr6 26550645 26550697 -162728857 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr6 26551715 26551736 -162727818 + AT_rich Low_complexity Low_complexity 1 21 0 297 304 54 0 chr6 26551816 26551928 -162727626 - MIR SINE MIR -72 190 73 2176 167 98 23 chr6 26552334 26552866 -162726688 + L1MB7 LINE L1 5602 6173 -11 194 310 126 11 chr6 26552982 26553069 -162726485 + L2 LINE L2 3112 3208 -64 186 43 0 0 chr6 26554435 26554458 -162725096 + (CA)n Simple_repeat Simple_repeat 2 24 0 647 177 0 24 chr6 26554638 26554762 -162724792 + FLAM_C SINE Alu 1 121 -22 1025 138 80 62 chr6 26554771 26554996 -162724558 + AluJo SINE Alu 59 287 -25 708 66 76 7 chr6 26555001 26555290 -162724264 + (TA)n Simple_repeat Simple_repeat 1 309 0 187 92 77 0 chr6 26555301 26555366 -162724188 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 * 444 58 76 29 chr6 26555352 26555523 -162724031 + (TA)n Simple_repeat Simple_repeat 2 180 0 43 56 0 0 chr6 26555523 26555594 -162723960 + AT_rich Low_complexity Low_complexity 1 71 0 598 59 92 6 chr6 26555713 26556209 -162723345 + (TA)n Simple_repeat Simple_repeat 1 538 0 695 184 0 0 chr6 26556230 26556344 -162723210 + FLAM_C SINE Alu 3 116 -17 192 77 0 0 chr6 26556344 26556370 -162723184 + (GGAA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr6 26556614 26556636 -162722918 + GC_rich Low_complexity Low_complexity 1 22 0 260 227 133 0 chr6 26556923 26556998 -162722556 - L2 LINE L2 0 3272 3188 526 265 148 16 chr6 26557369 26557558 -162721996 - MIR SINE MIR 0 262 49 1875 104 4 4 chr6 26557776 26558055 -162721499 + L1PA14 LINE L1 5883 6161 0 569 182 144 8 chr6 26558295 26558427 -162721127 - MER45A DNA AcHobo -25 153 4 228 312 13 0 chr6 26558438 26558515 -162721039 + L2 LINE L2 2227 2304 -1010 1246 207 91 0 chr6 26558515 26558824 -162720730 + MER63B DNA MER1_type 4 340 -96 206 225 28 0 chr6 26558849 26558991 -162720563 + (TTTA)n Simple_repeat Simple_repeat 3 148 0 400 190 23 6 chr6 26559004 26559178 -162720376 + (TTTA)n Simple_repeat Simple_repeat 4 180 0 313 209 154 9 chr6 26559188 26559298 -162720256 + MER63B DNA MER1_type 304 429 -5 204 387 70 7 chr6 26559304 26559446 -162720108 + L2 LINE L2 2298 2448 -866 1807 169 0 23 chr6 26559857 26560165 -162719389 + AluJb SINE Alu 1 301 -11 433 368 86 23 chr6 26560314 26560665 -162718889 + L2 LINE L2 2494 2866 -448 187 296 8 112 chr6 26560725 26560850 -162718704 + L2 LINE L2 2966 3077 -195 1021 198 0 0 chr6 26560910 26561082 -162718472 - FAM SINE Alu -3 172 1 419 345 0 0 chr6 26561175 26561291 -162718263 + L2 LINE L2 3156 3271 -1 2104 138 7 0 chr6 26561940 26562237 -162717317 - AluSq SINE Alu -14 299 1 631 160 0 9 chr6 26562294 26562400 -162717154 + U6 snRNA snRNA 3 107 0 2122 108 0 7 chr6 26562442 26562763 -162716791 - AluSx SINE Alu 0 319 1 207 246 0 49 chr6 26563173 26563234 -162716320 + L2 LINE L2 3215 3272 0 883 304 53 91 chr6 26563397 26563495 -162716059 + L1MEd LINE L1 3 103 -6207 1624 165 53 11 chr6 26563495 26563780 -162715774 - AluJo SINE Alu -15 297 1 883 304 53 91 chr6 26563780 26565297 -162714257 + L1MEd LINE L1 103 1584 -4726 2181 116 33 0 chr6 26565507 26565809 -162713745 + AluSx SINE Alu 1 312 0 2270 89 3 3 chr6 26565972 26566263 -162713291 + AluSx SINE Alu 3 293 -19 1801 163 3 13 chr6 26566402 26566703 -162712851 + AluJb SINE Alu 1 298 -14 261 239 92 0 chr6 26566713 26566822 -162712732 + L1MEd LINE L1 2117 2235 -3894 1217 152 41 75 chr6 26566839 26567069 -162712485 + L1MC/D LINE L1 5443 5612 -559 1953 162 0 7 chr6 26567069 26567372 -162712182 + AluJb SINE Alu 1 301 -11 1217 152 41 75 chr6 26567372 26567585 -162711969 + L1MC/D LINE L1 5612 5831 -340 2271 95 0 3 chr6 26567654 26567950 -162711604 + AluSx SINE Alu 18 312 0 1719 171 7 14 chr6 26567963 26568256 -162711298 + AluJb SINE Alu 1 291 -21 7390 29 7 8 chr6 26568256 26568781 -162710773 + L1PA4 LINE L1 5132 5657 -498 2396 48 7 0 chr6 26568781 26569072 -162710482 + AluY SINE Alu 1 293 -18 7390 29 7 8 chr6 26569072 26569570 -162709984 + L1PA4 LINE L1 5657 6154 -1 1417 264 60 10 chr6 26569572 26570177 -162709377 + L1ME3A LINE L1 5317 5951 -219 182 121 0 91 chr6 26570479 26570522 -162709032 + (GGAA)n Simple_repeat Simple_repeat 2 39 -22 2480 67 0 0 chr6 26570522 26570820 -162708734 + AluY SINE Alu 1 298 -13 182 121 0 91 chr6 26570820 26570842 -162708712 + (GGAA)n Simple_repeat Simple_repeat 39 61 0 2085 107 6 38 chr6 26570927 26571245 -162708309 + AluSx SINE Alu 1 308 -4 493 309 236 10 chr6 26572156 26572444 -162707110 + L2 LINE L2 2943 3295 -18 297 151 0 0 chr6 26572501 26572554 -162707000 + GA-rich Low_complexity Low_complexity 2 54 0 189 0 0 0 chr6 26573386 26573407 -162706147 + (A)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr6 26573456 26573478 -162706076 + AT_rich Low_complexity Low_complexity 1 22 0 423 268 174 37 chr6 26574225 26574353 -162705201 + MIR SINE MIR 47 211 -51 2228 103 0 3 chr6 26574353 26574645 -162704909 + AluSq SINE Alu 1 291 -22 423 268 174 37 chr6 26574645 26574706 -162704848 + MIR SINE MIR 211 262 0 271 336 35 9 chr6 26575090 26575203 -162704351 + LTR16A1 LTR ERVL 187 302 -155 313 220 33 11 chr6 26575229 26575320 -162704234 + LTR16A1 LTR ERVL 364 456 -1 1047 121 18 30 chr6 26575458 26575623 -162703931 + FRAM SINE Alu 4 166 0 7116 55 1 1 chr6 26575632 26576850 -162702704 + L1PA6 LINE L1 4930 6154 0 270 148 0 37 chr6 26576859 26576913 -162702641 - MLT1B LTR MaLR -338 52 1 1275 127 24 79 chr6 26577421 26577461 -162702093 - L1MA9 LINE L1 -6 6306 6265 1683 168 44 10 chr6 26577461 26577758 -162701796 + AluJo SINE Alu 3 309 -3 1275 127 24 79 chr6 26577758 26578008 -162701546 - L1MA9 LINE L1 -47 6265 6032 266 183 0 33 chr6 26578008 26578068 -162701486 + L1MA6 LINE L1 5883 5940 -360 207 0 0 0 chr6 26578084 26578107 -162701447 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 644 205 0 0 chr6 26578311 26578428 -162701126 + FLAM_C SINE Alu 2 118 -15 865 110 4 25 chr6 26578453 26578688 -162700866 + (GGAA)n Simple_repeat Simple_repeat 1 230 0 2441 84 3 0 chr6 26579716 26580025 -162699529 + AluSp SINE Alu 1 310 -3 22 0 0 0 chr6 26580193 26580215 -162699339 + AT_rich Low_complexity Low_complexity 1 22 0 2618 42 0 0 chr6 26580655 26580964 -162698590 + AluY SINE Alu 1 309 -2 5062 77 3 3 chr6 26580994 26581654 -162697900 - L1PA7 LINE L1 0 6154 5495 763 238 14 22 chr6 26581654 26581877 -162697677 + HsTC2 DNA Tc2 19 239 -1659 203 0 0 36 chr6 26581887 26581915 -162697639 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 253 180 0 33 chr6 26581929 26581990 -162697564 - LTR30 LTR ERV1 -108 614 556 511 191 18 143 chr6 26582035 26582173 -162697381 + HsTC2 DNA Tc2 1645 1734 -164 1487 234 0 17 chr6 26582173 26582472 -162697082 + AluJo SINE Alu 1 294 -18 511 191 18 143 chr6 26582472 26582606 -162696948 + HsTC2 DNA Tc2 1734 1883 -15 1992 105 10 53 chr6 26582710 26583014 -162696540 + AluSx SINE Alu 1 291 -21 1889 142 64 45 chr6 26583123 26583390 -162696164 - MER47A DNA MER2_type -1957 366 89 2060 126 10 0 chr6 26583390 26583692 -162695862 - AluSx SINE Alu -7 305 1 1889 142 64 45 chr6 26583692 26583783 -162695771 - MER47A DNA MER2_type -2234 89 1 22 0 0 0 chr6 26583871 26583893 -162695661 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 26584161 26584189 -162695365 + AT_rich Low_complexity Low_complexity 1 28 0 2217 138 0 0 chr6 26584229 26584540 -162695014 + AluSx SINE Alu 1 311 -1 270 0 0 0 chr6 26584549 26584579 -162694975 + (CA)n Simple_repeat Simple_repeat 2 31 0 2320 107 0 3 chr6 26585057 26585366 -162694188 + AluSq SINE Alu 1 308 -5 2576 37 3 0 chr6 26585759 26586059 -162693495 + AluY SINE Alu 1 301 -10 2146 113 0 0 chr6 26586224 26586515 -162693039 + AluSg SINE Alu 5 295 -15 2133 140 0 9 chr6 26586725 26587040 -162692514 + AluSx SINE Alu 1 312 0 945 205 57 14 chr6 26587087 26587297 -162692257 + MER20 DNA MER1_type 1 219 0 2222 128 3 0 chr6 26587536 26587848 -162691706 + AluSp SINE Alu 1 313 0 1953 184 3 0 chr6 26588862 26589215 -162690339 + MER47B DNA MER2_type 1 354 -64 309 271 0 23 chr6 26589216 26589240 -162690314 + (TA)n Simple_repeat Simple_repeat 1 24 -106 2087 147 0 3 chr6 26589240 26589540 -162690014 + AluSx SINE Alu 1 299 -13 309 271 0 23 chr6 26589540 26589636 -162689918 + (TA)n Simple_repeat Simple_repeat 24 120 -10 351 0 0 0 chr6 26589636 26589675 -162689879 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 309 271 0 23 chr6 26589675 26589686 -162689868 + (TA)n Simple_repeat Simple_repeat 120 130 0 1634 177 17 27 chr6 26589687 26589986 -162689568 - AluJb SINE Alu -16 296 1 420 175 0 0 chr6 26589987 26590050 -162689504 + MER47B DNA MER2_type 356 418 0 1218 310 68 64 chr6 26590072 26590292 -162689262 + L2 LINE L2 2061 2279 -1035 2047 131 16 13 chr6 26590292 26590632 -162688922 - AluSq SINE Alu 0 341 1 1218 310 68 64 chr6 26590632 26590805 -162688749 + L2 LINE L2 2279 2450 -864 2191 128 11 121 chr6 26590805 26591243 -162688311 + MLT1B LTR MaLR 1 390 0 1218 310 68 64 chr6 26591243 26591649 -162687905 + L2 LINE L2 2450 2892 -422 2188 99 3 0 chr6 26592414 26592790 -162686764 - AluSq SINE Alu 0 377 1 2388 192 63 103 chr6 26593410 26594125 -162685429 - LTR8A LTR ERV1 -8 719 34 1122 287 81 42 chr6 26594140 26594292 -162685262 + L2 LINE L2 1849 1994 -1320 1700 173 287 26 chr6 26594292 26594784 -162684770 - LTR29 LTR ERV1 -1 621 2 1122 287 81 42 chr6 26594784 26594957 -162684597 + L2 LINE L2 1994 2159 -1155 2079 129 10 0 chr6 26594957 26595251 -162684303 - AluSq SINE Alu -16 297 1 1122 287 81 42 chr6 26595251 26595418 -162684136 + L2 LINE L2 2159 2361 -953 1875 110 8 4 chr6 26595426 26595736 -162683818 - AluSp SINE Alu 0 328 18 546 256 32 15 chr6 26595761 26595965 -162683589 - L1MCc LINE L1 -4586 2536 2144 585 265 45 69 chr6 26595966 26596482 -162683072 - L1MCc LINE L1 -4889 1534 1130 977 254 171 28 chr6 26598004 26598504 -162681050 + L2 LINE L2 2732 3312 -1 182 322 59 25 chr6 26598628 26598746 -162680808 - L2 LINE L2 -164 3108 2987 236 356 35 0 chr6 26598861 26598948 -162680606 - L2 LINE L2 -537 2777 2688 524 237 10 0 chr6 26599143 26599240 -162680314 - MER2 DNA MER2_type -247 98 1 420 342 73 6 chr6 26599292 26599505 -162680049 + MIR SINE MIR 5 236 -26 2046 64 0 4 chr6 26599705 26599954 -162679600 - AluY SINE Alu -10 301 54 346 303 83 23 chr6 26599958 26600090 -162679464 - MIR SINE MIR -117 145 6 2225 110 7 0 chr6 26600155 26600447 -162679107 - AluSx SINE Alu -18 294 1 686 260 43 47 chr6 26600447 26600747 -162678807 - L1ME4a LINE L1 -228 5893 5595 2317 95 0 7 chr6 26600768 26601074 -162678480 + AluSx SINE Alu 1 304 -8 729 308 57 0 chr6 26601582 26601881 -162677673 + MER58B DNA MER1_type 26 341 0 1788 179 0 10 chr6 26601935 26602243 -162677311 - AluSx SINE Alu -7 305 1 1599 158 8 8 chr6 26602290 26602555 -162676999 - AluJb SINE Alu -8 304 40 368 329 7 28 chr6 26602558 26602701 -162676853 - L1MC/D LINE L1 -2081 5727 5588 2221 120 0 0 chr6 26602725 26603024 -162676530 + AluSx SINE Alu 1 299 -13 231 277 36 12 chr6 26604428 26604511 -162675043 + MIR SINE MIR 178 262 0 892 194 10 53 chr6 26604570 26604708 -162674846 + MARNA DNA Mariner 246 374 -212 2130 145 0 0 chr6 26604708 26605004 -162674550 + AluSx SINE Alu 1 296 -16 892 194 10 53 chr6 26605004 26605071 -162674483 + MARNA DNA Mariner 374 442 -144 309 278 52 52 chr6 26605301 26605416 -162674138 + L2 LINE L2 3158 3272 0 2528 76 58 3 chr6 26605972 26606315 -162673239 + L1PA12 LINE L1 5807 6168 0 313 47 0 0 chr6 26606479 26606522 -162673032 - L1PA15 LINE L1 -8 6157 6115 839 73 122 79 chr6 26606522 26606686 -162672868 - L1PA14 LINE L1 -129 6032 5862 2385 105 0 0 chr6 26606687 26606991 -162672563 - AluSx SINE Alu -8 304 1 476 282 134 38 chr6 26611275 26611484 -162668070 - MIR SINE MIR -32 230 2 243 310 69 0 chr6 26611948 26612035 -162667519 + MER119 DNA MER1_type 1 93 -490 438 119 0 0 chr6 26612079 26612138 -162667416 + MER119 DNA MER1_type 523 581 -2 313 302 157 6 chr6 26612233 26612392 -162667162 - L3 LINE CR1 -48 1529 1347 1987 135 3 3 chr6 26612394 26612690 -162666864 - AluSx SINE Alu -16 296 1 1539 203 50 0 chr6 26612715 26613055 -162666499 + L1MC4 LINE L1 7682 8038 -4 977 254 171 28 chr6 26613594 26614094 -162665460 + L2 LINE L2 2732 3312 -1 259 345 35 0 chr6 26614451 26614538 -162665016 - L2 LINE L2 -537 2777 2688 524 237 10 0 chr6 26614733 26614830 -162664724 - MER2 DNA MER2_type -247 98 1 458 330 73 6 chr6 26614882 26615095 -162664459 + MIR SINE MIR 5 236 -26 2321 81 0 19 chr6 26615295 26615602 -162663952 - AluY SINE Alu -10 301 1 2274 103 0 0 chr6 26615648 26615940 -162663614 - AluSx SINE Alu -20 292 1 25 51 0 0 chr6 26616271 26616310 -162663244 + AT_rich Low_complexity Low_complexity 1 39 0 2316 94 3 0 chr6 26616587 26616895 -162662659 - AluSg SINE Alu -1 309 1 21 0 0 0 chr6 26618280 26618301 -162661253 + AT_rich Low_complexity Low_complexity 1 21 0 1606 163 47 11 chr6 26618336 26618613 -162660941 + AluJb SINE Alu 1 287 -25 532 137 0 0 chr6 26618633 26618706 -162660848 + AluJ/FRAM SINE Alu 215 287 -25 372 265 122 0 chr6 26619068 26619166 -162660388 + MIR SINE MIR 42 151 -111 5283 53 3 11 chr6 26619779 26620414 -162659140 + SVA Other Other 757 1386 0 270 229 0 0 chr6 26622360 26622430 -162657124 + (TA)n Simple_repeat Simple_repeat 2 71 0 195 69 0 0 chr6 26622672 26622701 -162656853 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 2257 86 0 0 chr6 26622720 26622998 -162656556 + AluSc SINE Alu 1 278 -31 22 0 0 0 chr6 26623009 26623031 -162656523 + AT_rich Low_complexity Low_complexity 1 22 0 2356 81 0 7 chr6 26623344 26623642 -162655912 - AluSx SINE Alu -8 304 9 256 255 71 10 chr6 26623666 26623764 -162655790 - L1MC4 LINE L1 -26 8016 7913 780 200 0 0 chr6 26623892 26624017 -162655537 - FLAM_A SINE Alu -8 125 1 2113 99 39 0 chr6 26624278 26624560 -162654994 + AluSp SINE Alu 1 293 -20 27 62 0 0 chr6 26627567 26627615 -162651939 + AT_rich Low_complexity Low_complexity 1 48 0 2281 99 0 3 chr6 26627768 26628061 -162651493 - AluSx SINE Alu -20 292 1 930 215 54 5 chr6 26628217 26628422 -162651132 - MIR SINE MIR -18 244 30 2475 77 0 0 chr6 26628431 26628730 -162650824 - AluY SINE Alu -12 299 1 376 210 58 94 chr6 26628761 26628899 -162650655 - L1MC4 LINE L1 -24 8018 5945 25 0 0 0 chr6 26629481 26629506 -162650048 + AT_rich Low_complexity Low_complexity 1 25 0 800 181 0 0 chr6 26630836 26630969 -162648585 + FLAM_C SINE Alu 1 133 0 23 0 0 0 chr6 26631928 26631951 -162647603 + AT_rich Low_complexity Low_complexity 1 23 0 2242 182 125 92 chr6 26631956 26632656 -162646898 - LTR48 LTR ERV1 0 787 59 1643 130 6 102 chr6 26632656 26632979 -162646575 + AluSx SINE Alu 3 294 -18 2242 182 125 92 chr6 26632979 26633037 -162646517 - LTR48 LTR ERV1 -728 59 4 469 200 47 33 chr6 26633133 26633283 -162646271 - MER104 DNA Tc2 0 180 29 6831 115 5 9 chr6 26633535 26634508 -162645046 + LTR5 LTR ERVK 1 969 0 767 262 191 45 chr6 26634779 26635161 -162644393 - L2 LINE L2 -497 2817 2380 2548 62 0 0 chr6 26635161 26635468 -162644086 - AluY SINE Alu -4 307 1 332 272 28 28 chr6 26635533 26635713 -162643841 + L1ME4a LINE L1 5942 6121 0 1793 100 115 7 chr6 26635736 26636005 -162643549 + AluSc SINE Alu 5 302 -7 1905 153 4 0 chr6 26636132 26636413 -162643141 + AluJo SINE Alu 1 282 -30 393 250 9 120 chr6 26637875 26638091 -162641463 + L2 LINE L2 2900 3091 -181 283 284 94 39 chr6 26638312 26638439 -162641115 + L2 LINE L2 3139 3272 0 2249 91 14 3 chr6 26638943 26639240 -162640314 - AluY SINE Alu -11 300 1 1666 170 42 10 chr6 26640332 26640621 -162638933 + AluJo SINE Alu 2 299 -13 222 37 0 0 chr6 26640740 26640767 -162638787 + (A)n Simple_repeat Simple_repeat 1 27 0 797 204 0 0 chr6 26640774 26640906 -162638648 + FLAM_A SINE Alu 2 133 0 658 186 0 0 chr6 26641090 26641187 -162638367 + MER2 DNA MER2_type 1 97 -248 1980 125 0 20 chr6 26641187 26641491 -162638063 + AluSx SINE Alu 1 298 -14 1100 277 87 3 chr6 26641534 26641834 -162637720 + MER119 DNA MER1_type 1 325 -258 636 243 20 7 chr6 26641866 26642018 -162637536 + MER45A DNA AcHobo 16 169 -9 231 270 0 0 chr6 26642033 26642107 -162637447 + L1MD2 LINE L1 6154 6227 -132 322 191 48 119 chr6 26642108 26642276 -162637278 - L1MCa LINE L1 -4350 2076 1921 1355 232 7 3 chr6 26642283 26642589 -162636965 - AluJo SINE Alu -5 307 1 2394 85 0 0 chr6 26642591 26642897 -162636657 - AluY SINE Alu -5 306 1 843 147 0 7 chr6 26642898 26643034 -162636520 - AluJo SINE Alu -177 135 1 240 204 19 0 chr6 26643065 26643119 -162636435 + MER119 DNA MER1_type 528 582 -1 3545 106 8 10 chr6 26643226 26643727 -162635827 - LTR3b LTR ERVK 0 500 1 1898 129 3 13 chr6 26643818 26644127 -162635427 - AluSx SINE Alu -6 306 1 830 277 57 14 chr6 26644180 26644534 -162635020 + L1ME4a LINE L1 5556 5924 -197 239 203 51 13 chr6 26644550 26644629 -162634925 + L1ME4a LINE L1 6030 6111 -10 21 0 0 0 chr6 26644645 26644666 -162634888 + AT_rich Low_complexity Low_complexity 1 21 0 1580 161 17 3 chr6 26644726 26645017 -162634537 + AluJb SINE Alu 5 299 -13 2085 110 3 0 chr6 26645155 26645478 -162634076 - AluSx SINE Alu 0 324 1 345 319 14 36 chr6 26645478 26645616 -162633938 - MIR SINE MIR -96 166 32 985 159 24 6 chr6 26646246 26646416 -162633138 + MLT1B LTR MaLR 1 173 -217 830 168 100 100 chr6 26646416 26646666 -162632888 + AluJo SINE Alu 49 298 -14 727 86 9 52 chr6 26646686 26646802 -162632752 + MLT1B LTR MaLR 215 325 -65 2024 105 10 42 chr6 26647376 26647713 -162631841 + AluSx SINE Alu 1 327 0 637 238 0 0 chr6 26648453 26648579 -162630975 + FLAM_C SINE Alu 3 128 -15 185 389 63 8 chr6 26648692 26648818 -162630736 + L2 LINE L2 3134 3266 -6 362 343 165 23 chr6 26649023 26649411 -162630143 - L2 LINE L2 -3 3269 2827 2055 98 40 3 chr6 26650383 26650680 -162628874 + AluSx SINE Alu 1 308 -4 271 200 0 125 chr6 26650711 26650757 -162628797 - MIR SINE MIR 0 262 212 785 170 17 139 chr6 26650757 26650850 -162628704 - MER3 DNA MER1_type -4 205 102 2115 95 18 0 chr6 26650850 26651134 -162628420 + AluSq SINE Alu 3 291 -22 785 170 17 139 chr6 26651134 26651145 -162628409 - MER3 DNA MER1_type -107 102 91 198 0 0 0 chr6 26651145 26651167 -162628387 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 785 170 17 139 chr6 26651167 26651291 -162628263 - MER3 DNA MER1_type -118 91 4 271 200 0 125 chr6 26651291 26651324 -162628230 - MIR SINE MIR -50 212 193 2154 95 23 0 chr6 26651480 26651784 -162627770 - AluSp SINE Alu -2 311 1 1911 153 7 0 chr6 26652642 26652937 -162626617 + AluSx SINE Alu 1 297 -15 579 234 13 32 chr6 26653326 26653484 -162626070 + L1MD3 LINE L1 7797 7951 -44 247 118 53 105 chr6 26653587 26653633 -162625921 + L1MD3 LINE L1 7924 7966 -29 2064 108 0 7 chr6 26653633 26653928 -162625626 + AluSx SINE Alu 1 293 -19 247 118 53 105 chr6 26653928 26653957 -162625597 + L1MD3 LINE L1 7966 7995 0 216 0 0 0 chr6 26653979 26654003 -162625551 + (TG)n Simple_repeat Simple_repeat 2 25 0 1700 114 0 0 chr6 26655126 26655363 -162624191 + AluSq SINE Alu 1 237 -76 21 0 0 0 chr6 26655814 26655835 -162623719 + AT_rich Low_complexity Low_complexity 1 21 0 967 120 0 0 chr6 26656173 26656306 -162623248 + FLAM_C SINE Alu 1 133 0 1930 118 11 0 chr6 26656397 26656706 -162622848 + AluSx SINE Alu 1 312 0 1898 104 8 4 chr6 26657181 26657449 -162622105 - AluSx SINE Alu -41 271 3 1794 165 0 3 chr6 26657484 26657781 -162621773 + AluJb SINE Alu 7 302 -10 2044 102 28 0 chr6 26657881 26658165 -162621389 + AluSg SINE Alu 1 292 -18 277 314 0 0 chr6 26658635 26658705 -162620849 - L2 LINE L2 -2 3270 3201 517 226 8 68 chr6 26658804 26658878 -162620676 - MER45A DNA AcHobo -1403 178 114 2252 85 3 0 chr6 26658878 26659172 -162620382 + AluSx SINE Alu 1 295 -17 517 226 8 68 chr6 26659172 26659230 -162620324 - MER45A DNA AcHobo -1467 114 54 257 329 0 0 chr6 26659427 26659497 -162620057 + L2 LINE L2 2986 3055 -217 1687 167 10 10 chr6 26659531 26659830 -162619724 - AluJb SINE Alu -9 303 5 1449 136 5 0 chr6 26660216 26660436 -162619118 - AluJo SINE Alu -52 260 40 2163 106 0 10 chr6 26661017 26661318 -162618236 - AluSx SINE Alu -14 298 1 378 253 48 0 chr6 26662048 26662131 -162617423 + L2 LINE L2 3168 3254 -18 181 241 74 19 chr6 26662090 26662144 -162617410 + MIR SINE MIR 206 262 0 * 23 78 0 0 chr6 26662159 26662210 -162617344 + AT_rich Low_complexity Low_complexity 1 51 0 1851 156 0 7 chr6 26662408 26662710 -162616844 - AluJo SINE Alu -12 300 1 545 299 86 30 chr6 26662712 26662946 -162616608 - MIR SINE MIR -5 257 11 671 262 77 0 chr6 26664532 26664715 -162614839 - MIR SINE MIR 0 262 66 2116 127 0 13 chr6 26665282 26665598 -162613956 + AluSx SINE Alu 1 312 0 1711 157 7 7 chr6 26665629 26665929 -162613625 + AluJb SINE Alu 1 300 -12 1969 137 0 10 chr6 26666434 26666741 -162612813 + AluSx SINE Alu 1 304 -8 664 289 11 16 chr6 26667714 26667904 -162611650 - MIR SINE MIR -6 256 68 341 122 20 0 chr6 26717981 26718059 -162561495 + Alu SINE Alu 234 312 0 2030 111 7 7 chr6 26718523 26718802 -162560752 - AluSx SINE Alu -31 281 3 1944 160 0 3 chr6 26718837 26719131 -162560423 + AluJb SINE Alu 7 299 -13 2166 106 28 0 chr6 26719234 26719518 -162560036 + AluSg SINE Alu 1 292 -18 251 314 0 0 chr6 26719988 26720058 -162559496 - L2 LINE L2 -2 3270 3201 517 221 8 69 chr6 26720158 26720230 -162559324 - MER45A DNA AcHobo -1405 176 114 2311 99 3 0 chr6 26720230 26720524 -162559030 + AluSx SINE Alu 1 295 -17 517 221 8 69 chr6 26720524 26720582 -162558972 - MER45A DNA AcHobo -1467 114 54 227 182 73 0 chr6 26720794 26720849 -162558705 + L2 LINE L2 2997 3055 -217 1878 168 0 10 chr6 26720883 26721186 -162558368 - AluJb SINE Alu -8 304 5 1544 136 5 0 chr6 26721572 26721792 -162557762 - AluJo SINE Alu -52 260 40 2301 106 0 10 chr6 26722373 26722676 -162556878 - AluSx SINE Alu -12 300 1 343 232 0 0 chr6 26723406 26723475 -162556079 + L2 LINE L2 3168 3236 -36 27 100 0 0 chr6 26723478 26723568 -162555986 + AT_rich Low_complexity Low_complexity 1 90 0 1982 152 0 7 chr6 26723766 26724068 -162555486 - AluJo SINE Alu -12 300 1 470 295 86 30 chr6 26724070 26724304 -162555250 - MIR SINE MIR -5 257 11 623 258 75 0 chr6 26725793 26725979 -162553575 - MIR SINE MIR 0 262 63 2274 120 0 13 chr6 26726544 26726860 -162552694 + AluSx SINE Alu 1 312 0 1826 157 7 7 chr6 26726891 26727191 -162552363 + AluJb SINE Alu 1 300 -12 2088 137 0 10 chr6 26727696 26728003 -162551551 + AluSx SINE Alu 1 304 -8 571 295 11 16 chr6 26728977 26729167 -162550387 - MIR SINE MIR -6 256 68 1337 212 116 59 chr6 26729409 26729527 -162550027 + MER4A LTR ERV1 5 115 -549 2478 83 3 0 chr6 26729527 26729839 -162549715 - AluSp SINE Alu 0 313 1 1337 212 116 59 chr6 26729839 26730178 -162549376 + MER4A LTR ERV1 115 488 -176 1276 127 0 0 chr6 26730181 26730354 -162549200 - AluSg/x SINE Alu -6 306 134 371 154 138 0 chr6 26730360 26730425 -162549129 - tRNA-Ile-ATT tRNA tRNA -3 74 1 1214 137 0 26 chr6 26730431 26730621 -162548933 + MER4B LTR ERV1 426 610 0 6218 4 0 0 chr6 26730746 26731422 -162548132 + L1PA2 LINE L1 5477 6152 -3 277 298 48 30 chr6 26731551 26731719 -162547835 + L1ME LINE L1 49 219 -5900 459 110 0 73 chr6 26731759 26731841 -162547713 - Alu SINE Alu -8 302 227 565 252 55 39 chr6 26731862 26732173 -162547381 + L1ME LINE L1 2277 2589 -3540 2302 117 0 0 chr6 26732225 26732532 -162547022 - AluSq SINE Alu -6 307 1 771 278 51 64 chr6 26732532 26732851 -162546703 + L1ME LINE L1 4521 4832 -1297 1297 166 136 11 chr6 26732851 26733116 -162546438 + AluJb SINE Alu 5 302 0 771 278 51 64 chr6 26733116 26733324 -162546230 + L1ME LINE L1 4832 5041 -1088 1168 118 0 18 chr6 26733351 26733521 -162546033 - FRAM SINE Alu -12 164 1 650 278 47 18 chr6 26733526 26734002 -162545552 + L1ME LINE L1 5069 5558 -595 2437 78 0 0 chr6 26734414 26734709 -162544845 - AluSq SINE Alu -18 295 1 189 0 0 0 chr6 26734712 26734733 -162544821 + (T)n Simple_repeat Simple_repeat 1 21 0 26 30 0 0 chr6 26735443 26735476 -162544078 + AT_rich Low_complexity Low_complexity 1 33 0 2358 94 0 16 chr6 26735476 26735794 -162543760 + AluSq SINE Alu 1 313 0 342 45 0 0 chr6 26735797 26735841 -162543713 + (CA)n Simple_repeat Simple_repeat 1 44 0 2255 109 0 26 chr6 26736293 26736604 -162542950 + AluSc SINE Alu 1 303 -6 1222 119 0 0 chr6 26737027 26737187 -162542367 + AluSg/x SINE Alu 137 296 -16 180 71 0 0 chr6 26737188 26737196 -162542358 + (CA)n Simple_repeat Simple_repeat 1 8 -20 2373 72 0 44 chr6 26737196 26737515 -162542039 + AluY SINE Alu 1 305 -6 180 71 0 0 chr6 26737515 26737534 -162542020 + (CA)n Simple_repeat Simple_repeat 7 28 0 186 358 15 0 chr6 26737648 26737715 -162541839 - L2 LINE L2 -14 3258 3191 1838 143 3 59 chr6 26739071 26739393 -162540161 + AluJo SINE Alu 2 305 -7 979 255 214 21 chr6 26740120 26740555 -162538999 + LTR33 LTR ERVL 2 520 -1 3111 75 82 7 chr6 26740581 26741033 -162538521 + LTR19A LTR ERV1 1 486 0 994 123 45 7 chr6 26741965 26742120 -162537434 - AluSq SINE Alu -16 297 137 247 235 0 0 chr6 26742172 26742223 -162537331 + (CACG)n Simple_repeat Simple_repeat 2 52 0 339 306 48 43 chr6 26742734 26742943 -162536611 + LTR67 LTR ERVL 348 557 0 22 0 0 0 chr6 26742977 26742999 -162536555 + AT_rich Low_complexity Low_complexity 1 22 0 332 179 0 15 chr6 26743431 26743498 -162536056 + MLT1K LTR MaLR 496 561 -27 294 246 64 18 chr6 26743501 26743611 -162535943 - MIR SINE MIR 0 262 148 1723 106 4 31 chr6 26743731 26743902 -162535652 - AluSx SINE Alu -9 303 140 2346 119 0 0 chr6 26743902 26744212 -162535342 - AluSx SINE Alu 0 312 3 1723 106 4 31 chr6 26744212 26744296 -162535258 - AluSx SINE Alu -172 140 55 1617 181 51 0 chr6 26744310 26744586 -162534968 + AluJo SINE Alu 1 290 -22 317 228 66 49 chr6 26744597 26744679 -162534875 + L1 LINE L1 4735 4785 -1361 1644 175 0 0 chr6 26744679 26744936 -162534618 + AluSx SINE Alu 1 257 -55 317 228 66 49 chr6 26744936 26745030 -162534524 + L1 LINE L1 4785 4876 -1270 1913 114 44 0 chr6 26745030 26745301 -162534253 + AluSx SINE Alu 1 283 -29 408 188 10 31 chr6 26745304 26745400 -162534154 + L1MC4 LINE L1 6514 6607 -1435 980 128 0 0 chr6 26745401 26745534 -162534020 - AluSg/x SINE Alu -36 276 144 2210 81 0 18 chr6 26745534 26745848 -162533706 - AluY SINE Alu 0 309 1 1942 145 3 17 chr6 26745853 26746149 -162533405 - AluSx SINE Alu -20 292 1 963 127 0 8 chr6 26746889 26747023 -162532531 + FLAM_C SINE Alu 1 133 -10 397 125 0 0 chr6 26747026 26747082 -162532472 + U6 snRNA snRNA 1 56 -51 2344 99 3 0 chr6 26747308 26747602 -162531952 - AluSp SINE Alu -18 295 1 367 298 99 6 chr6 26747975 26748156 -162531398 + MIR SINE MIR 51 248 -14 2284 87 0 3 chr6 26748178 26748466 -162531088 + AluSx SINE Alu 11 297 -15 432 212 96 48 chr6 26749249 26749395 -162530159 - MIR3 SINE MIR -11 197 45 295 295 0 0 chr6 26749526 26749604 -162529950 + MIR3 SINE MIR 121 198 -10 2478 59 0 16 chr6 26749759 26750064 -162529490 + AluY SINE Alu 1 300 -11 1121 110 37 21 chr6 26750203 26750394 -162529160 + L1MA9 LINE L1 6119 6312 0 2259 125 0 3 chr6 26752102 26752415 -162527139 + AluSx SINE Alu 1 312 0 652 246 77 27 chr6 26752572 26752792 -162526762 + Charlie8 DNA MER1_type 46 276 -2141 1728 158 27 31 chr6 26753053 26753345 -162526209 + AluSx SINE Alu 4 294 -18 2426 89 0 13 chr6 26753856 26754172 -162525382 + AluSx SINE Alu 1 312 0 821 175 142 57 chr6 26754438 26754684 -162524870 + ORSL DNA AcHobo 2 268 -7 2010 120 0 7 chr6 26754848 26755140 -162524414 + AluSx SINE Alu 22 311 -1 181 0 69 0 chr6 26755147 26755176 -162524378 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 231 314 218 0 chr6 26755873 26755997 -162523557 - MIR SINE MIR -81 181 31 211 226 0 32 chr6 26756695 26756757 -162522797 + C-rich Low_complexity Low_complexity 4 63 0 422 218 21 115 chr6 26757788 26758022 -162521532 - L2 LINE L2 0 3313 3102 1415 185 12 52 chr6 26758073 26758571 -162520983 - MLT1B LTR MaLR -2 465 1 617 133 0 0 chr6 26758622 26758712 -162520842 - LTR12 LTR ERV1 0 714 625 317 146 58 87 chr6 26758712 26758815 -162520739 - LTR30 LTR ERV1 -92 614 378 822 167 89 45 chr6 26758917 26759208 -162520346 - LTR12 LTR ERV1 -481 1683 62 277 211 0 0 chr6 26759208 26759260 -162520294 - LTR30 LTR ERV1 -670 52 1 2185 249 73 19 chr6 26759279 26760005 -162519549 - L2 LINE L2 -382 2932 2168 2133 80 6 61 chr6 26760315 26760450 -162519104 + AluSx SINE Alu 1 142 -170 2346 93 0 10 chr6 26760450 26760760 -162518794 + AluSx SINE Alu 1 307 -5 2133 80 6 61 chr6 26760760 26760935 -162518619 + AluSx SINE Alu 142 294 -18 21 0 0 0 chr6 26761088 26761109 -162518445 + AT_rich Low_complexity Low_complexity 1 21 0 1533 197 3 58 chr6 26761113 26761293 -162518261 - AluJo SINE Alu 0 312 157 2316 67 30 7 chr6 26761293 26761592 -162517962 - AluY SINE Alu -5 306 1 1533 197 3 58 chr6 26761592 26761741 -162517813 - AluJo SINE Alu -155 157 1 692 99 0 0 chr6 26761797 26761898 -162517656 - L1MB3 LINE L1 0 6183 6083 908 103 0 15 chr6 26761999 26762135 -162517419 + L1MB3 LINE L1 5840 5973 -210 863 194 0 0 chr6 26762135 26762316 -162517238 + FRAM SINE Alu 2 182 0 232 164 60 134 chr6 26762489 26762556 -162516998 + AluJo SINE Alu 87 148 -154 864 198 0 19 chr6 26763187 26763344 -162516210 + AluJo SINE Alu 129 282 -30 32 26 0 0 chr6 26763344 26763383 -162516171 + AT_rich Low_complexity Low_complexity 1 39 0 266 170 0 0 chr6 26763472 26763525 -162516029 - MLT2B1 LTR ERVL -4 516 464 339 179 0 0 chr6 26763529 26763596 -162515958 + (TG)n Simple_repeat Simple_repeat 2 68 0 2175 178 125 19 chr6 26763612 26764044 -162515510 - MLT2B1 LTR ERVL -42 478 1 559 265 65 20 chr6 26765727 26765927 -162513627 + MIR SINE MIR 39 247 -15 1246 195 0 0 chr6 26766051 26766261 -162513293 + MER58A DNA MER1_type 15 224 0 484 265 78 43 chr6 26766961 26767310 -162512244 + L2 LINE L2 2712 3069 -244 2214 110 3 0 chr6 26767320 26767612 -162511942 + AluSx SINE Alu 1 293 -19 353 237 0 126 chr6 26767691 26767826 -162511728 - L1MC4a LINE L1 -1149 6659 6542 21 0 0 0 chr6 26767831 26767852 -162511702 + AT_rich Low_complexity Low_complexity 1 21 0 2448 81 7 0 chr6 26767877 26768184 -162511370 - AluSg1 SINE Alu 0 309 1 26 30 0 0 chr6 26768270 26768303 -162511251 + AT_rich Low_complexity Low_complexity 1 33 0 1573 141 37 30 chr6 26768361 26768660 -162510894 - L1MC3 LINE L1 0 7785 7485 512 287 60 76 chr6 26768870 26769386 -162510168 - HAL1b LINE L1 -769 579 72 6265 86 15 8 chr6 26769423 26769716 -162509838 - L1PB1 LINE L1 -2 6149 5860 2399 95 3 0 chr6 26769716 26770022 -162509532 + AluSc SINE Alu 1 307 -2 6265 86 15 8 chr6 26770022 26771027 -162508527 - L1PB1 LINE L1 -291 5860 4877 9301 156 45 5 chr6 26771027 26772504 -162507050 - L1PBa LINE L1 -2548 4314 2897 180 0 0 0 chr6 26772504 26772524 -162507030 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 9301 156 45 5 chr6 26772524 26773850 -162505704 - L1PBa LINE L1 -3965 2897 1392 929 220 5 0 chr6 26773847 26774038 -162505516 - L1PBa LINE L1 -6666 197 6 * 2061 134 0 0 chr6 26774311 26774623 -162504931 - AluSq SINE Alu 0 312 1 1806 141 61 17 chr6 26774701 26774998 -162504556 - AluJb SINE Alu -2 310 1 204 245 104 28 chr6 26775761 26775867 -162503687 + MIR SINE MIR 20 133 -129 2031 122 37 0 chr6 26776090 26776385 -162503169 + AluSx SINE Alu 1 306 -6 840 194 0 0 chr6 26776401 26776569 -162502985 - AluJb SINE Alu 0 305 138 210 118 0 0 chr6 26776721 26776755 -162502799 + (T)n Simple_repeat Simple_repeat 1 34 0 1970 136 14 0 chr6 26777076 26777362 -162502192 + AluSx SINE Alu 1 290 -22 2552 53 0 28 chr6 26777788 26778108 -162501446 + AluY SINE Alu 1 311 0 1794 154 59 3 chr6 26778293 26778579 -162500975 + AluJb SINE Alu 3 304 -8 1942 139 17 0 chr6 26778651 26778939 -162500615 - AluSx SINE Alu -19 293 1 365 118 9 173 chr6 26779733 26779843 -162499711 + LTR9 LTR ERV1 438 529 -83 26 50 0 0 chr6 26780188 26780228 -162499326 + AT_rich Low_complexity Low_complexity 1 40 0 494 91 0 0 chr6 26780715 26780792 -162498762 - Alu SINE Alu -2 310 234 545 263 20 40 chr6 26780792 26780916 -162498638 + L1ME4a LINE L1 5703 5823 -298 2173 133 0 0 chr6 26780916 26781217 -162498337 + AluSx SINE Alu 1 301 -11 545 263 20 40 chr6 26781217 26781290 -162498264 + L1ME4a LINE L1 5823 5896 -225 284 261 44 33 chr6 26781344 26781524 -162498030 + L1ME4a LINE L1 5882 6063 -58 332 212 61 38 chr6 26781687 26781703 -162497851 - L1MC4a LINE L1 -1800 6008 5994 694 203 0 15 chr6 26781703 26781836 -162497718 - FLAM_A SINE Alu -2 131 1 332 212 61 38 chr6 26781836 26781951 -162497603 - L1MC4a LINE L1 -1814 5994 5874 512 120 0 11 chr6 26782203 26782295 -162497259 + (TG)n Simple_repeat Simple_repeat 2 92 0 327 232 22 103 chr6 26782868 26783053 -162496501 - MIR3 SINE MIR -9 199 30 1821 143 17 17 chr6 26783370 26783491 -162496063 + AluJb SINE Alu 1 121 -191 2121 97 73 0 chr6 26783491 26783779 -162495775 - AluSx SINE Alu -3 309 1 1821 143 17 17 chr6 26783779 26783951 -162495603 + AluJb SINE Alu 120 294 -18 234 0 0 0 chr6 26784112 26784138 -162495416 + (TG)n Simple_repeat Simple_repeat 2 27 0 1217 142 18 36 chr6 26784639 26784858 -162494696 + L1MA5 LINE L1 6001 6215 -85 2182 102 7 3 chr6 26785610 26785913 -162493641 - AluSx SINE Alu -3 309 6 304 311 15 8 chr6 26786451 26786583 -162492971 - MER5B DNA MER1_type -44 134 2 23 0 0 0 chr6 26786866 26786889 -162492665 + AT_rich Low_complexity Low_complexity 1 23 0 1676 131 3 53 chr6 26787050 26787332 -162492222 + AluSq SINE Alu 1 268 -45 405 276 47 102 chr6 26787858 26788456 -162491098 + HAL1 LINE L1 810 1374 -1133 415 89 48 16 chr6 26788460 26788584 -162490970 + (TA)n Simple_repeat Simple_repeat 2 129 0 302 160 0 0 chr6 26788587 26788637 -162490917 + L1MC4 LINE L1 6654 6703 -1339 463 276 131 67 chr6 26788644 26788925 -162490629 + HAL1 LINE L1 1400 1722 -785 2305 101 0 0 chr6 26788925 26789222 -162490332 + AluSg SINE Alu 1 297 -13 463 276 131 67 chr6 26789222 26789390 -162490164 + HAL1 LINE L1 1722 1878 -629 2103 118 14 3 chr6 26789998 26790294 -162489260 - AluSq SINE Alu -14 299 1 1573 103 121 40 chr6 26790336 26790608 -162488946 - AluSg1 SINE Alu -13 296 3 256 256 128 96 chr6 26790699 26790788 -162488766 - HAL1 LINE L1 -872 1635 1550 2352 119 0 0 chr6 26790788 26791100 -162488454 - AluSx SINE Alu 0 312 1 256 256 128 96 chr6 26791100 26791304 -162488250 - HAL1 LINE L1 -957 1550 1319 2297 96 7 0 chr6 26791304 26791605 -162487949 - AluSx SINE Alu -9 303 1 256 256 128 96 chr6 26791605 26791770 -162487784 - HAL1 LINE L1 -1188 1319 1161 232 326 65 11 chr6 26792970 26793062 -162486492 + MIR SINE MIR 9 105 -157 2364 78 0 7 chr6 26797165 26797458 -162482096 + AluY SINE Alu 1 291 -20 1981 180 24 3 chr6 26797829 26798163 -162481391 + MER58B DNA MER1_type 1 341 0 1186 192 0 14 chr6 26799171 26799385 -162480169 - AluJo SINE Alu -101 211 1 9530 107 65 12 chr6 26799464 26800247 -162479307 - Tigger3(Golem) DNA MER2_type 0 3029 2289 2193 122 0 0 chr6 26800247 26800543 -162479011 + AluJb SINE Alu 1 296 -16 9530 107 65 12 chr6 26800543 26801241 -162478313 - Tigger3(Golem) DNA MER2_type -740 2289 1470 2959 143 69 20 chr6 26801237 26801434 -162478120 - Tigger3(Golem) DNA MER2_type -2465 564 378 * 1911 150 0 14 chr6 26801434 26801749 -162477805 - AluJb SINE Alu 0 311 1 2959 143 69 20 chr6 26801749 26802088 -162477466 - Tigger3(Golem) DNA MER2_type -2651 378 1 996 203 61 71 chr6 26802381 26802707 -162476847 - L1MD2 LINE L1 -10 6349 6027 1475 126 25 107 chr6 26802822 26803140 -162476414 - MLT1B LTR MaLR -91 299 13 2162 115 0 0 chr6 26803149 26803436 -162476118 + AluSx SINE Alu 1 287 -25 1935 153 10 7 chr6 26803491 26803791 -162475763 + AluSx SINE Alu 1 301 -11 2603 141 12 73 chr6 26803992 26804081 -162475473 + MER101 LTR ERV1 1 94 -380 1535 142 78 25 chr6 26804081 26804362 -162475192 + AluJb SINE Alu 1 296 -16 2603 141 12 73 chr6 26804362 26804777 -162474777 + MER101 LTR ERV1 94 474 0 551 223 208 20 chr6 26804860 26805062 -162474492 + L1ME1 LINE L1 5919 6158 -8 * 573 190 112 33 chr6 26804893 26805067 -162474487 + L1MA10 LINE L1 5970 6129 -188 1669 164 24 13 chr6 26805067 26805365 -162474189 - AluJb SINE Alu -11 301 1 573 190 112 33 chr6 26805365 26805378 -162474176 + L1MA10 LINE L1 6129 6317 0 1256 191 82 21 chr6 26805604 26805886 -162473668 - MER58B DNA MER1_type -6 335 37 416 269 134 19 chr6 26806802 26807018 -162472536 + MIR SINE MIR 12 252 -10 621 298 18 22 chr6 26809140 26809368 -162470186 + MIR SINE MIR 24 250 -12 976 214 0 0 chr6 26809517 26809695 -162469859 + FRAM SINE Alu 1 175 -1 2724 140 17 9 chr6 26809818 26810240 -162469314 - MER61B LTR ERV1 0 425 1 1415 168 150 34 chr6 26810541 26810673 -162468881 + MLT1A1 LTR MaLR 1 116 -249 2232 114 0 13 chr6 26810673 26810979 -162468575 + AluSx SINE Alu 1 302 -10 1415 168 150 34 chr6 26810979 26811173 -162468381 + MLT1A1 LTR MaLR 116 365 0 667 276 30 0 chr6 26811208 26811407 -162468147 + MIR SINE MIR 58 262 0 243 250 80 20 chr6 26811869 26811969 -162467585 + L2 LINE L2 3142 3247 -25 1799 115 51 34 chr6 26812612 26812907 -162466647 - AluSx SINE Alu -12 300 1 602 255 37 30 chr6 26813819 26814022 -162465532 + MIR SINE MIR 59 262 0 2163 115 3 0 chr6 26814248 26814536 -162465018 - AluSp SINE Alu -22 291 3 226 77 19 39 chr6 26814896 26814928 -162464626 + LTR66 LTR ERVL 391 423 -187 402 21 0 0 chr6 26814928 26814975 -162464579 + (CA)n Simple_repeat Simple_repeat 2 48 0 226 77 19 39 chr6 26814975 26814994 -162464560 + LTR66 LTR ERVL 423 441 -169 * 3455 143 91 125 chr6 26814990 26815904 -162463650 + MER21A LTR ERV1 13 895 -36 2338 112 0 0 chr6 26816848 26817153 -162462401 + AluSx SINE Alu 1 305 -7 204 231 0 0 chr6 26817754 26817793 -162461761 + CT-rich Low_complexity Low_complexity 1 39 0 273 98 0 0 chr6 26817796 26817837 -162461717 + (TCCCC)n Simple_repeat Simple_repeat 3 43 0 1077 193 177 4 chr6 26817845 26818099 -162461455 - AluJo SINE Alu -3 299 2 324 140 0 35 chr6 26818102 26818159 -162461395 - AluJo/FLAM SINE Alu -170 132 78 2002 96 0 0 chr6 26818596 26818846 -162460708 + AluSc SINE Alu 39 288 -21 1936 138 0 10 chr6 26818853 26819144 -162460410 + AluSx SINE Alu 1 288 -24 361 251 136 66 chr6 26819222 26819397 -162460157 + L1ME4a LINE L1 5681 5842 -279 698 183 0 23 chr6 26819397 26819528 -162460026 - FLAM_A SINE Alu -5 128 1 361 251 136 66 chr6 26819528 26819758 -162459796 + L1ME4a LINE L1 5842 6121 0 559 128 186 0 chr6 26819769 26819871 -162459683 + AluSq/x SINE Alu 2 122 -190 405 81 0 0 chr6 26819979 26820041 -162459513 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 485 200 25 58 chr6 26821138 26821258 -162458296 + MER21B LTR ERV1 384 499 -364 5031 147 30 1 chr6 26821342 26822156 -162457398 - L1MB7 LINE L1 -16 6168 5332 1359 185 37 63 chr6 26822156 26822565 -162456989 - MLT1C LTR MaLR 0 390 6 3234 199 24 30 chr6 26822574 26823193 -162456361 - L1MB7 LINE L1 -2192 3954 3340 1545 190 28 11 chr6 26823193 26823343 -162456211 - AluJb SINE Alu -23 289 130 2343 96 10 0 chr6 26823343 26823636 -162455918 - AluSx SINE Alu -16 296 1 1545 190 28 11 chr6 26823636 26823769 -162455785 - AluJb SINE Alu -182 130 1 3234 199 24 30 chr6 26823769 26823956 -162455598 - L1MB7 LINE L1 -2806 3340 3153 1971 168 3 0 chr6 26824191 26824501 -162455053 + AluSx SINE Alu 1 311 -1 2204 91 0 20 chr6 26826599 26826897 -162452657 + AluY SINE Alu 1 292 -19 2476 81 0 3 chr6 26827106 26827416 -162452138 + AluSc SINE Alu 1 309 0 205 290 0 0 chr6 26827429 26827497 -162452057 + MIR SINE MIR 86 143 -65 1268 240 25 21 chr6 26827788 26828113 -162451441 + MLT1A2 LTR MaLR 1 326 -48 877 164 8 0 chr6 26828853 26828987 -162450567 + AluJo SINE Alu 1 135 -177 1499 187 23 40 chr6 26829053 26829353 -162450201 + AluJo SINE Alu 1 295 -17 247 258 106 68 chr6 26829871 26830003 -162449551 - L2 LINE L2 0 3272 3136 317 325 43 34 chr6 26830965 26831174 -162448380 + MIR SINE MIR 6 216 -46 2428 55 7 0 chr6 26831941 26832230 -162447324 + AluY SINE Alu 1 291 -20 323 190 0 25 chr6 26832273 26832352 -162447202 + GA-rich Low_complexity Low_complexity 3 79 0 244 253 91 30 chr6 26832405 26832504 -162447050 + L2 LINE L2 3202 3306 -7 2095 137 3 7 chr6 26832542 26832841 -162446713 + AluSx SINE Alu 1 298 -14 884 141 0 15 chr6 26832893 26833028 -162446526 + FLAM_C SINE Alu 1 133 0 221 312 113 87 chr6 26833235 26833626 -162445928 + L2 LINE L2 2819 3219 -53 210 207 35 0 chr6 26834334 26834392 -162445162 + A-rich Low_complexity Low_complexity 4 63 0 1881 124 0 22 chr6 26834467 26834740 -162444814 + AluSx SINE Alu 1 267 -45 676 279 92 23 chr6 26834793 26835147 -162444407 + L1MC4a LINE L1 5519 5804 -360 23 0 0 0 chr6 26835396 26835419 -162444135 + AT_rich Low_complexity Low_complexity 1 23 0 2252 113 0 0 chr6 26835468 26835761 -162443793 + AluSg SINE Alu 1 293 -17 1920 166 0 10 chr6 26835786 26836082 -162443472 + AluJb SINE Alu 2 294 -18 189 0 0 0 chr6 26837951 26837972 -162441582 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 1687 177 6 22 chr6 26838271 26838587 -162440967 + AluJb SINE Alu 1 311 -1 443 90 42 28 chr6 26841037 26841181 -162438373 + (TA)n Simple_repeat Simple_repeat 1 146 0 369 261 187 15 chr6 26842036 26842170 -162437384 + MER91A DNA MER1_type 19 175 -21 230 323 0 0 chr6 26842785 26842847 -162436707 - tRNA-Ser(Sec) tRNA tRNA -28 62 1 191 216 40 68 chr6 26842933 26843007 -162436547 - MER5A DNA MER1_type -115 74 3 2211 114 0 7 chr6 26843495 26843792 -162435762 + AluSx SINE Alu 1 295 -17 27 62 0 0 chr6 26844108 26844156 -162435398 + AT_rich Low_complexity Low_complexity 1 48 0 22 56 0 0 chr6 26844270 26844306 -162435248 + AT_rich Low_complexity Low_complexity 1 36 0 1354 191 24 0 chr6 26894971 26895217 -162384337 + AluJo SINE Alu 59 310 -2 346 182 39 0 chr6 26895217 26895294 -162384260 + L1ME4a LINE L1 5387 5466 -2342 1830 168 3 13 chr6 26895311 26895626 -162383928 + AluJb SINE Alu 1 312 0 555 241 118 0 chr6 26895628 26895815 -162383739 + L1MC4a LINE L1 5723 5931 -1877 2053 58 0 4 chr6 26895936 26896195 -162383359 - AluY SINE Alu -8 303 46 28 0 0 0 chr6 26896250 26896278 -162383276 + AT_rich Low_complexity Low_complexity 1 28 0 267 147 156 64 chr6 26896430 26896539 -162383015 + MER53 DNA DNA 1 119 -70 337 271 226 28 chr6 26897655 26897836 -162381718 - MIR SINE MIR -44 218 2 354 266 73 0 chr6 26898058 26898167 -162381387 + L2 LINE L2 3197 3313 0 573 269 138 29 chr6 26898330 26898706 -162380848 + L1MC4a LINE L1 5698 6114 -1694 477 243 104 35 chr6 26898756 26899015 -162380539 - HAL1 LINE L1 -38 2469 2193 2333 60 14 0 chr6 26899511 26899793 -162379761 - AluSc SINE Alu -23 286 1 321 234 110 7 chr6 26899870 26900024 -162379530 - HAL1 LINE L1 -354 2153 1984 381 269 108 48 chr6 26900251 26900500 -162379054 + L1ME4a LINE L1 5653 5916 -205 1380 273 75 57 chr6 26900564 26900846 -162378708 + L1MEd LINE L1 72 347 -5772 2363 112 0 0 chr6 26900846 26901158 -162378396 + AluSx SINE Alu 1 312 0 1380 273 75 57 chr6 26901158 26901468 -162378086 + L1MEd LINE L1 347 650 -5469 1656 186 31 17 chr6 26901468 26901758 -162377796 + AluJo SINE Alu 1 294 -18 1380 273 75 57 chr6 26901758 26902104 -162377450 + L1MEd LINE L1 650 1028 -5091 1529 256 261 6 chr6 26902104 26902794 -162376760 - L2 LINE L2 -298 3015 2156 2303 109 0 0 chr6 26903448 26903742 -162375812 - AluSx SINE Alu -18 294 1 454 150 10 60 chr6 26903795 26903895 -162375659 - MLT1A2 LTR MaLR 0 390 296 609 189 28 35 chr6 26903903 26904046 -162375508 - MLT1A2 LTR MaLR -229 145 4 305 237 46 99 chr6 26905403 26905707 -162373847 + HAL1 LINE L1 812 1099 -1408 737 246 23 100 chr6 26905741 26905903 -162373651 - MIR SINE MIR -2 260 124 2141 122 17 7 chr6 26905903 26906198 -162373356 + AluSx SINE Alu 1 298 -14 737 246 23 100 chr6 26906198 26906295 -162373259 - MIR SINE MIR -138 124 21 204 97 0 0 chr6 26906362 26906393 -162373161 + (CA)n Simple_repeat Simple_repeat 2 32 0 503 294 63 28 chr6 26906393 26906787 -162372767 + HAL1 LINE L1 1155 1562 -945 1686 104 24 21 chr6 26906787 26907074 -162372480 + L1MA4 LINE L1 6007 6294 -6 428 315 42 67 chr6 26907102 26907154 -162372400 + HAL1 LINE L1 1534 1586 -921 1916 147 6 52 chr6 26907154 26907481 -162372073 - AluJb SINE Alu 0 312 1 428 315 42 67 chr6 26907481 26907666 -162371888 + HAL1 LINE L1 1586 1765 -742 232 326 22 11 chr6 26907838 26907927 -162371627 + LTR67 LTR ERVL 105 194 -363 835 200 0 0 chr6 26908079 26908234 -162371320 + FRAM SINE Alu 20 174 -2 389 232 40 47 chr6 26908304 26908508 -162371046 + L1M4 LINE L1 4906 5112 -1034 23 33 0 0 chr6 26908511 26908541 -162371013 + AT_rich Low_complexity Low_complexity 1 30 0 1883 199 45 22 chr6 26908570 26909078 -162370476 + L1MB7 LINE L1 3990 4509 -1637 1566 183 62 55 chr6 26909070 26909391 -162370163 + L1MB7 LINE L1 5729 6055 -129 * 2048 141 0 0 chr6 26909391 26909682 -162369872 + AluSx SINE Alu 1 291 -21 1566 183 62 55 chr6 26909682 26909813 -162369741 + L1MB7 LINE L1 6055 6184 0 388 248 97 9 chr6 26909814 26909927 -162369627 - L2 LINE L2 -16 3297 3175 248 364 45 38 chr6 26910110 26910242 -162369312 + L3 LINE CR1 245 377 -1200 326 192 0 13 chr6 26910587 26910665 -162368889 + CT-rich Low_complexity Low_complexity 2 78 0 180 111 0 0 chr6 26911655 26911682 -162367872 + (T)n Simple_repeat Simple_repeat 1 27 0 1587 210 65 22 chr6 26911706 26912154 -162367400 - MLT1C LTR MaLR 0 467 1 2437 80 0 0 chr6 26912381 26912682 -162366872 + AluY SINE Alu 7 307 -4 2060 119 28 0 chr6 26913046 26913332 -162366222 + AluSx SINE Alu 1 294 -18 2446 113 0 0 chr6 26913369 26913680 -162365874 + AluSx SINE Alu 2 312 0 240 111 0 0 chr6 26913817 26913853 -162365701 + (TA)n Simple_repeat Simple_repeat 1 36 0 265 267 7 53 chr6 26916029 26916179 -162363375 + L3 LINE CR1 1214 1356 -221 806 157 0 22 chr6 26916619 26916753 -162362801 + FLAM_C SINE Alu 1 131 -2 246 275 50 100 chr6 26917251 26917371 -162362183 - L2 LINE L2 -3 3269 3156 1526 203 154 53 chr6 26917699 26917861 -162361693 + MLT1E2 LTR MaLR 7 151 -475 2887 110 21 42 chr6 26917861 26918237 -162361317 - MER4C LTR ERV1 0 465 100 2084 127 23 16 chr6 26918237 26918545 -162361009 - AluSq SINE Alu -3 310 1 2887 110 21 42 chr6 26918545 26918641 -162360913 - MER4C LTR ERV1 -365 100 3 1526 203 154 53 chr6 26918641 26919039 -162360515 + MLT1E2 LTR MaLR 151 626 0 390 328 62 66 chr6 26919307 26919489 -162360065 + L1MEd LINE L1 99 281 -5838 7781 110 31 55 chr6 26919489 26920822 -162358732 + HSMAR2 DNA Mariner 1 1301 -1 390 328 62 66 chr6 26920822 26920895 -162358659 + L1MEd LINE L1 281 353 -5766 736 285 120 60 chr6 26921080 26921619 -162357935 + L1MEd LINE L1 591 1200 -4969 2399 81 0 0 chr6 26921620 26921918 -162357636 + AluY SINE Alu 1 298 -13 309 337 35 23 chr6 26921920 26921944 -162357610 + L1MCa LINE L1 1266 1288 -1499 1250 152 14 62 chr6 26921944 26922233 -162357321 + L1MA9 LINE L1 6034 6308 -4 309 337 35 23 chr6 26922233 26922610 -162356944 + L1MCa LINE L1 1288 1913 -874 2328 102 3 0 chr6 26922709 26923004 -162356550 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr6 26923063 26923085 -162356469 + AT_rich Low_complexity Low_complexity 1 22 0 426 56 125 0 chr6 26923217 26923289 -162356265 - L1MA4 LINE L1 -2 6298 6218 1999 145 87 29 chr6 26923749 26923800 -162355754 - L1MB3 LINE L1 -1 6182 6135 2020 146 0 3 chr6 26923800 26924095 -162355459 - AluJb SINE Alu -18 294 1 1999 145 87 29 chr6 26924095 26924456 -162355098 - L1MB3 LINE L1 -48 6135 5746 1438 193 61 0 chr6 26924891 26925155 -162354399 + AluJb SINE Alu 1 280 -32 536 208 18 18 chr6 26925158 26925326 -162354228 + GA-rich Low_complexity Low_complexity 4 171 0 * 633 89 30 37 chr6 26925317 26925452 -162354102 + (GAAA)n Simple_repeat Simple_repeat 1 134 0 2060 94 42 11 chr6 26925864 26926151 -162353403 - AluSx SINE Alu -16 296 1 712 99 0 0 chr6 26926471 26926572 -162352982 + L1PB4 LINE L1 6048 6148 -8 790 252 13 35 chr6 26926870 26927100 -162352454 - MIR SINE MIR 0 262 38 2976 121 72 18 chr6 26927167 26927712 -162351842 + MER6A DNA MER2_type 32 605 0 432 0 0 0 chr6 26928982 26929030 -162350524 + (CA)n Simple_repeat Simple_repeat 2 49 0 331 274 71 18 chr6 26930139 26930252 -162349302 + MIR SINE MIR 89 207 -55 2272 67 0 3 chr6 26930262 26930600 -162348954 + AluY SINE Alu 1 337 0 245 274 105 48 chr6 26930684 26930808 -162348746 + LTR65 LTR ERV1 30 160 -509 301 324 0 0 chr6 26931313 26931384 -162348170 - L2 LINE L2 -7 3265 3195 1181 176 13 35 chr6 26931574 26931801 -162347753 + AluJo SINE Alu 1 222 -90 2318 87 7 0 chr6 26931984 26932272 -162347282 - AluSx SINE Alu -22 290 1 2445 84 0 0 chr6 26932484 26932782 -162346772 - AluY SINE Alu -13 298 1 21 36 0 0 chr6 26932785 26932813 -162346741 + AT_rich Low_complexity Low_complexity 1 28 0 3051 148 17 32 chr6 26934693 26934736 -162344818 - L1MB3 LINE L1 -9 6174 6132 2055 127 17 3 chr6 26934736 26935028 -162344526 - AluSx SINE Alu -16 296 1 3051 148 17 32 chr6 26935028 26935579 -162343975 - L1MB3 LINE L1 -51 6132 5589 235 340 101 73 chr6 26936504 26936751 -162342803 + L2 LINE L2 3019 3272 0 236 333 133 0 chr6 26936983 26937088 -162342466 + L2 LINE L2 2935 3053 -219 23 33 0 0 chr6 26937380 26937410 -162342144 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 26937879 26937900 -162341654 + AT_rich Low_complexity Low_complexity 1 21 0 2157 128 10 6 chr6 26937900 26938212 -162341342 + AluSp SINE Alu 1 313 0 1285 250 103 109 chr6 26938349 26940056 -162339498 + HAL1 LINE L1 67 1762 -745 722 214 30 135 chr6 26940213 26940480 -162339074 - MER8 DNA MER2_type 0 239 1 252 206 185 22 chr6 26941336 26941428 -162338126 - MIR SINE MIR -88 174 68 302 273 50 8 chr6 26941473 26941594 -162337960 - HAL1 LINE L1 -27 2480 2355 2459 149 25 51 chr6 26941988 26942497 -162337057 + LTR26B LTR ERV1 1 496 -35 883 79 0 64 chr6 26942496 26942636 -162336918 + MER4B LTR ERV1 477 607 -3 * 978 271 73 12 chr6 26942824 26943153 -162336401 + MLT1H1 LTR MaLR 1 349 -206 240 161 218 35 chr6 26943260 26943347 -162336207 - L1MC4 LINE L1 -58 7984 7882 1801 163 6 9 chr6 26943409 26943728 -162335826 - MER7A DNA MER2_type -28 318 3 3050 215 58 15 chr6 26943860 26944663 -162334891 - L1MC4 LINE L1 -377 7665 6828 429 214 22 0 chr6 26944708 26944797 -162334757 - L1MC4a LINE L1 -1049 6759 6669 4636 167 38 43 chr6 26944959 26945933 -162333621 + LTR5 LTR ERVK 1 969 0 680 171 62 207 chr6 26946279 26946583 -162332971 - MIR SINE MIR 0 262 3 2322 132 109 5 chr6 26946618 26947004 -162332550 + MSTB LTR MaLR 1 426 0 582 194 206 15 chr6 26947260 26947406 -162332148 - MER5A DNA MER1_type 0 178 10 410 228 111 94 chr6 26947427 26947598 -162331956 + MER5B DNA MER1_type 5 178 0 252 183 33 33 chr6 26948144 26948204 -162331350 - LTR67 LTR ERVL -20 537 478 653 353 57 64 chr6 26948711 26949116 -162330438 - L2 LINE L2 -1 3271 2870 2128 111 3 13 chr6 26951042 26951349 -162328205 - AluSp SINE Alu -9 304 1 2110 118 3 10 chr6 26951358 26951662 -162327892 - AluSx SINE Alu -10 302 1 1992 164 82 68 chr6 26951662 26952183 -162327371 - MER51A LTR ERV1 -90 455 2 1956 129 3 25 chr6 26952230 26952583 -162326971 - MER4A LTR ERV1 0 664 261 517 141 33 11 chr6 26952583 26952675 -162326879 - MER4A LTR ERV1 -566 98 5 16621 96 55 35 chr6 26952687 26954095 -162325459 - MER4A-int LTR ERV1 0 6598 5221 5826 48 0 3 chr6 26954095 26954766 -162324788 + L1PA6 LINE L1 5484 6152 -2 16621 96 55 35 chr6 26954766 26955502 -162324052 - MER4A-int LTR ERV1 -1377 5221 4384 2313 90 0 7 chr6 26955502 26955803 -162323751 + AluSc SINE Alu 3 301 -8 16621 96 55 35 chr6 26955803 26956363 -162323191 - MER4A-int LTR ERV1 -2214 4384 3837 1485 126 170 115 chr6 26956362 26956510 -162323044 - MER4A-int LTR ERV1 -2917 3681 3542 * 1893 156 0 0 chr6 26956510 26956792 -162322762 - AluSx SINE Alu -20 292 11 1485 126 170 115 chr6 26956792 26957194 -162322360 - MER4A-int LTR ERV1 -3056 3542 3001 1930 148 20 0 chr6 26957194 26957497 -162322057 - AluSx SINE Alu -3 309 1 1485 126 170 115 chr6 26957497 26957538 -162322016 - MER4A-int LTR ERV1 -3597 3001 2964 2002 144 0 22 chr6 26957544 26957857 -162321697 - AluSx SINE Alu -6 306 1 10130 41 9 2 chr6 26957873 26959821 -162319733 - L1PA5 LINE L1 0 6154 4196 46603 47 23 2 chr6 26959829 26965434 -162314120 - HERV17 LTR ERV1 -2903 5723 1 6430 53 12 47 chr6 26965434 26966242 -162313312 - LTR17 LTR ERV1 0 780 1 799 41 20 0 chr6 26966242 26966340 -162313214 - HERV17 LTR ERV1 -6498 100 1 1484 142 56 34 chr6 26966342 26966401 -162313153 - MER4A LTR ERV1 0 664 608 2046 111 7 10 chr6 26966401 26966690 -162312864 + AluSx SINE Alu 5 292 -20 1484 142 56 34 chr6 26966690 26966968 -162312586 - MER4A LTR ERV1 -56 608 261 605 84 42 11 chr6 26966968 26967063 -162312491 - MER4A LTR ERV1 -566 98 1 864 223 88 28 chr6 26967755 26967887 -162311667 - MER33 DNA MER1_type -2280 305 182 1712 168 7 0 chr6 26967887 26968161 -162311393 + AluJo SINE Alu 16 291 -21 864 223 88 28 chr6 26968161 26968311 -162311243 - MER33 DNA MER1_type -2403 182 6 2732 48 0 0 chr6 26968476 26968787 -162310767 - AluY SINE Alu 0 311 1 848 204 112 41 chr6 26968828 26969024 -162310530 + MER20 DNA MER1_type 6 215 -4 710 184 0 57 chr6 26969052 26969193 -162310361 + FLAM_C SINE Alu 1 133 0 1189 108 146 5 chr6 26969467 26969679 -162309875 - MSTB LTR MaLR 0 426 185 398 157 21 36 chr6 26969685 26969825 -162309729 + CT-rich Low_complexity Low_complexity 3 140 0 1218 173 18 9 chr6 26969833 26970058 -162309496 - AluJo SINE Alu 0 312 86 777 179 179 18 chr6 26970058 26970226 -162309328 - MSTB LTR MaLR -230 196 2 1207 152 14 5 chr6 26970226 26970436 -162309118 - L1MB3 LINE L1 -56 6127 5916 230 231 0 0 chr6 26970454 26970506 -162309048 - MER103 DNA DNA -75 91 40 2247 117 0 7 chr6 26970847 26971154 -162308400 - AluSx SINE Alu -7 305 1 291 285 24 86 chr6 26971337 26971398 -162308156 + L1ME LINE L1 5672 5735 -386 2034 148 0 3 chr6 26971398 26971701 -162307853 + AluJo SINE Alu 1 302 -10 291 285 24 86 chr6 26971701 26971846 -162307708 + L1ME LINE L1 5735 5872 -249 186 170 149 0 chr6 26971875 26971922 -162307632 - L2 LINE L2 -1 3271 3218 311 238 79 63 chr6 26972012 26972201 -162307353 + L1ME LINE L1 5281 5472 -2336 700 143 0 0 chr6 26972217 26972315 -162307239 + AluSp/q SINE Alu 200 297 -16 251 184 0 0 chr6 26972435 26972484 -162307070 + L1ME LINE L1 5771 5819 -343 507 122 0 24 chr6 26972538 26972620 -162306934 + FLAM_C SINE Alu 58 137 -6 26 30 0 0 chr6 26972865 26972898 -162306656 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr6 26973014 26973048 -162306506 + AT_rich Low_complexity Low_complexity 1 34 0 287 49 73 0 chr6 26974370 26974411 -162305143 - L2 LINE L2 0 3313 3270 656 192 60 177 chr6 26974474 26974859 -162304695 - L2 LINE L2 -49 3264 2925 235 139 0 0 chr6 26974901 26974937 -162304617 - L2 LINE L2 -570 2744 2709 310 241 0 0 chr6 26974940 26974998 -162304556 - Tigger5 DNA MER2_type 0 2323 2266 363 284 0 35 chr6 26975093 26975209 -162304345 - L2 LINE L2 -605 2709 2598 375 280 105 20 chr6 26975280 26975480 -162304074 - L2 LINE L2 -1220 2094 1878 1508 169 0 8 chr6 26975571 26975825 -162303729 - AluJo SINE Alu -25 287 36 259 259 191 8 chr6 26975834 26975965 -162303589 - MIR SINE MIR -18 244 90 2022 117 0 0 chr6 26976868 26977142 -162302412 - AluSx SINE Alu -15 297 24 263 316 118 7 chr6 26977532 26977668 -162301886 + MIR SINE MIR 88 238 -24 2322 102 0 0 chr6 26978173 26978468 -162301086 + AluSx SINE Alu 6 300 -12 350 228 130 0 chr6 26978529 26978621 -162300933 + L2 LINE L2 2954 3057 -215 1969 120 33 0 chr6 26978926 26979233 -162300321 + AluSx SINE Alu 1 316 0 307 234 16 0 chr6 26979582 26979646 -162299908 + MIR SINE MIR 194 258 -4 237 274 33 98 chr6 26979642 26979795 -162299759 - L3 LINE CR1 -42 1535 1393 * 2352 95 0 0 chr6 26979921 26980215 -162299339 - AluSg SINE Alu -16 294 1 694 117 216 0 chr6 26981547 26981658 -162297896 + AluJo SINE Alu 2 136 -176 1822 121 15 0 chr6 26981784 26982049 -162297505 - AluSx SINE Alu -14 298 30 2529 53 0 3 chr6 26982350 26982651 -162296903 - AluY SINE Alu -11 300 1 2278 107 0 0 chr6 26983567 26983877 -162295677 - AluSx SINE Alu -2 310 1 1422 156 73 43 chr6 26985116 26985265 -162294289 - MLT1A1 LTR MaLR -55 310 167 2114 118 3 3 chr6 26985265 26985552 -162294002 - AluSx SINE Alu -25 287 1 1422 156 73 43 chr6 26985552 26985703 -162293851 - MLT1A1 LTR MaLR -198 167 1 1315 180 84 0 chr6 26986056 26986317 -162293237 - AluJo SINE Alu -29 283 1 552 189 141 68 chr6 26986455 26986661 -162292893 + L1MC4a LINE L1 6627 6847 -961 293 239 141 7 chr6 26986681 26986823 -162292731 + L1MC4 LINE L1 7044 7204 -838 912 224 188 31 chr6 26987003 26987481 -162292073 + L1MC4 LINE L1 7490 8042 0 396 231 94 16 chr6 26987550 26987733 -162291821 + MIR SINE MIR 8 256 -6 189 107 0 0 chr6 26988052 26988080 -162291474 + (T)n Simple_repeat Simple_repeat 1 28 0 278 25 0 25 chr6 26988456 26988496 -162291058 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr6 26989419 26989442 -162290112 + AT_rich Low_complexity Low_complexity 1 23 0 1773 153 20 14 chr6 26989771 26990066 -162289488 + AluJb SINE Alu 1 297 -15 253 223 108 108 chr6 26990293 26990432 -162289122 - MIR SINE MIR -55 207 69 1581 173 39 11 chr6 26990504 26990788 -162288766 - AluJo SINE Alu -16 296 5 2237 70 17 30 chr6 26990863 26991162 -162288392 + AluY SINE Alu 1 295 -16 302 263 305 8 chr6 26991171 26991289 -162288265 - MER5A DNA MER1_type 0 189 37 202 286 0 0 chr6 26991408 26991457 -162288097 - MER5B DNA MER1_type -129 49 1 1880 145 39 0 chr6 26991497 26991779 -162287775 - AluJo SINE Alu -19 293 1 640 195 26 39 chr6 26992219 26992373 -162287181 - MER3 DNA MER1_type -55 154 3 420 276 164 0 chr6 26992580 26992714 -162286840 + MIR SINE MIR 53 208 -54 2347 91 7 0 chr6 26993408 26993705 -162285849 - AluSp SINE Alu -14 299 1 1708 173 23 23 chr6 26993858 26994159 -162285395 + AluJo SINE Alu 1 301 -11 246 32 0 0 chr6 26994381 26994412 -162285142 + (CA)n Simple_repeat Simple_repeat 2 32 0 968 119 0 0 chr6 26994654 26994780 -162284774 + FLAM_C SINE Alu 1 126 -17 1752 164 18 7 chr6 26995244 26995530 -162284024 + AluSx SINE Alu 1 289 -23 2212 87 0 71 chr6 26995530 26995852 -162283702 + AluSc SINE Alu 1 299 -10 363 208 42 0 chr6 26996195 26996267 -162283287 - Tigger5 DNA MER2_type 0 2323 2249 352 254 0 0 chr6 26996272 26996343 -162283211 + Tigger5 DNA MER2_type 2249 2319 -4 410 159 0 14 chr6 26996346 26996415 -162283139 - Tigger5 DNA MER2_type -2247 76 9 1969 138 3 10 chr6 26997762 26998059 -162281495 - AluSx SINE Alu -17 295 1 2142 124 0 7 chr6 26998706 26999012 -162280542 + AluSx SINE Alu 1 304 -8 2194 107 3 3 chr6 26999864 27000164 -162279390 - AluSx SINE Alu -12 300 1 712 212 7 22 chr6 27000654 27000791 -162278763 + AluJo SINE Alu 2 136 -176 180 0 0 0 chr6 27002297 27002317 -162277237 + (A)n Simple_repeat Simple_repeat 1 20 0 210 128 0 0 chr6 27003407 27003446 -162276108 + (CGG)n Simple_repeat Simple_repeat 3 41 0 2359 88 0 0 chr6 27005450 27005755 -162273799 + AluSx SINE Alu 1 305 -7 512 145 0 0 chr6 27005782 27005851 -162273703 - AluS SINE Alu -243 70 2 4354 150 95 20 chr6 27005919 27006682 -162272872 - L1MB8 LINE L1 -5 6173 5309 2039 120 7 0 chr6 27006682 27006996 -162272558 - AluSx SINE Alu 0 316 1 4354 150 95 20 chr6 27006996 27007243 -162272311 - L1MB8 LINE L1 -869 5309 5082 2261 109 3 0 chr6 27008745 27009057 -162270497 + AluSq SINE Alu 1 313 0 218 324 0 0 chr6 27009160 27009231 -162270323 + CT-rich Low_complexity Low_complexity 2 72 0 1892 215 204 5 chr6 27010019 27010465 -162269089 - MLT1F LTR MaLR -7 535 1 837 208 120 0 chr6 27010559 27010751 -162268803 - MER58A DNA MER1_type -1 223 9 283 213 80 13 chr6 27010752 27010827 -162268727 - MLT1I LTR MaLR -14 395 316 760 230 35 40 chr6 27010884 27011084 -162268470 - MLT1I LTR MaLR -189 220 22 221 275 154 44 chr6 27011506 27011597 -162267957 - L2 LINE L2 -13 3300 3200 273 284 47 40 chr6 27011979 27012127 -162267427 + HAL1 LINE L1 5 153 -2354 2384 106 0 0 chr6 27012264 27012575 -162266979 + AluSx SINE Alu 2 312 0 286 314 52 35 chr6 27012721 27012950 -162266604 + HAL1 LINE L1 848 1080 -1427 356 270 112 10 chr6 27012987 27013183 -162266371 + HAL1 LINE L1 1146 1361 -1146 251 236 24 65 chr6 27013202 27013325 -162266229 + HAL1b LINE L1 339 456 -892 * 1353 249 43 14 chr6 27013314 27013759 -162265795 + L1ME4a LINE L1 4888 5345 -801 2598 106 11 24 chr6 27013764 27014133 -162265421 + THE1B LTR MaLR 1 364 0 11854 98 2 2 chr6 27014133 27015705 -162263849 + THE1B-int LTR MaLR 1 1571 -9 430 265 63 5 chr6 27015969 27016158 -162263396 + L1ME4a LINE L1 5717 5916 -205 1202 312 75 37 chr6 27016209 27016521 -162263033 + L1MEd LINE L1 60 359 -5760 2285 111 3 0 chr6 27016521 27016827 -162262727 + AluSx SINE Alu 5 311 -1 1202 312 75 37 chr6 27016827 27017139 -162262415 + L1MEd LINE L1 359 708 -5411 1646 170 32 14 chr6 27017151 27017433 -162262121 + AluJo SINE Alu 13 299 -13 1379 199 115 3 chr6 27017433 27017745 -162261809 + L1ME3 LINE L1 5555 5901 -263 1909 131 4 0 chr6 27017751 27018019 -162261535 + AluSx SINE Alu 39 307 -5 526 111 0 30 chr6 27018022 27018121 -162261433 + (GAAAA)n Simple_repeat Simple_repeat 5 100 0 445 218 211 0 chr6 27018156 27018298 -162261256 + L1ME3 LINE L1 5990 6161 -1 301 286 59 77 chr6 27018330 27018550 -162261004 + L1MC4 LINE L1 7826 8041 -1 387 300 9 0 chr6 27018564 27018674 -162260880 + HAL1 LINE L1 1531 1641 -866 1118 299 78 31 chr6 27018708 27019156 -162260398 + MLT1K LTR MaLR 58 526 -62 1136 216 93 31 chr6 27019219 27019543 -162260011 + MLT1C LTR MaLR 1 344 -123 377 165 0 13 chr6 27019546 27019625 -162259929 + A-rich Low_complexity Low_complexity 2 79 0 623 153 0 10 chr6 27019663 27019761 -162259793 + MLT1C LTR MaLR 371 467 0 1894 140 7 0 chr6 27019800 27020078 -162259476 + AluJo SINE Alu 21 300 -12 2079 148 0 3 chr6 27020196 27020507 -162259047 + AluSx SINE Alu 1 310 -2 261 247 14 0 chr6 27020565 27020638 -162258916 + HAL1 LINE L1 2087 2160 -347 313 312 0 51 chr6 27020698 27020836 -162258718 + HAL1b LINE L1 761 891 -457 968 183 42 124 chr6 27021063 27021088 -162258466 + L1ME3A LINE L1 5667 5692 -478 2478 82 3 0 chr6 27021088 27021393 -162258161 + AluSp SINE Alu 1 306 -7 968 183 42 124 chr6 27021393 27021723 -162257831 + L1ME3A LINE L1 5692 5993 -177 1594 257 58 54 chr6 27021736 27022258 -162257296 - MLT1G1 LTR MaLR 0 595 72 507 235 37 43 chr6 27022302 27022464 -162257090 + L1ME3A LINE L1 6010 6170 0 687 273 150 5 chr6 27022523 27022743 -162256811 + MIR SINE MIR 11 262 0 2671 127 3 3 chr6 27022804 27023166 -162256388 + THE1B LTR MaLR 3 364 0 1018 161 4 100 chr6 27023651 27023881 -162255673 + MLT1B LTR MaLR 1 208 -182 562 235 76 38 chr6 27023882 27024014 -162255540 + FLAM_A SINE Alu 1 137 -5 1163 172 0 0 chr6 27024015 27024201 -162255353 + MLT1B LTR MaLR 205 390 0 1646 180 0 46 chr6 27024293 27024598 -162254956 + AluJo SINE Alu 1 291 -21 2020 149 0 13 chr6 27024609 27024924 -162254630 + AluSx SINE Alu 1 311 -1 21 36 0 0 chr6 27024927 27024955 -162254599 + AT_rich Low_complexity Low_complexity 1 28 0 2255 103 3 0 chr6 27024973 27025274 -162254280 + AluSx SINE Alu 11 312 0 212 363 8 0 chr6 27025516 27025640 -162253914 - L2 LINE L2 -1345 1969 1845 592 266 139 41 chr6 27026591 27026929 -162252625 - MLT1L LTR MaLR -125 490 120 980 135 0 0 chr6 27027330 27027471 -162252083 - FLAM_C SINE Alu -2 141 1 325 24 0 24 chr6 27027504 27027546 -162252008 + MADE1 DNA Mariner 1 41 -39 702 165 61 0 chr6 27027874 27027989 -162251565 + FLAM_A SINE Alu 2 123 -10 833 232 18 58 chr6 27028613 27028758 -162250796 - MER58A DNA MER1_type -2199 221 87 2082 101 0 11 chr6 27028758 27029035 -162250519 - AluSx SINE Alu -38 274 1 833 232 18 58 chr6 27029035 27029113 -162250441 - MER58A DNA MER1_type -2333 87 7 180 0 0 0 chr6 27029187 27029207 -162250347 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 224 30 30 0 chr6 27029254 27029287 -162250267 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1472 140 10 104 chr6 27029289 27029597 -162249957 - AluJo SINE Alu -33 279 1 944 193 20 5 chr6 27030082 27030284 -162249270 - L1MD3 LINE L1 0 7995 7791 1605 165 0 81 chr6 27030413 27030747 -162248807 + AluJo SINE Alu 1 307 -5 318 148 0 0 chr6 27030750 27030804 -162248750 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 2249 109 3 0 chr6 27030910 27031204 -162248350 + AluSx SINE Alu 1 295 -17 2493 79 0 0 chr6 27031604 27031907 -162247647 + AluSc SINE Alu 1 303 -6 220 350 158 8 chr6 27032227 27032593 -162246961 - L2 LINE L2 -1198 2116 1696 384 239 90 32 chr6 27032703 27032858 -162246696 + L1MC4 LINE L1 7877 8040 -2 2004 132 35 0 chr6 27033093 27033380 -162246174 + AluSx SINE Alu 1 297 -15 2134 127 58 64 chr6 27034007 27034384 -162245170 + THE1C LTR MaLR 1 375 0 566 256 21 59 chr6 27034956 27035194 -162244360 - L1MC5 LINE L1 -73 7888 7660 2429 83 0 0 chr6 27035211 27035512 -162244042 - AluY SINE Alu -10 301 1 660 252 194 92 chr6 27035838 27036035 -162243519 - LTR33 LTR ERVL -27 494 319 1717 149 10 21 chr6 27036035 27036323 -162243231 + AluJo SINE Alu 11 295 -17 660 252 194 92 chr6 27036323 27036573 -162242981 - LTR33 LTR ERVL -202 319 1 708 257 81 5 chr6 27036704 27036914 -162242640 - MIR SINE MIR -14 248 23 555 234 26 75 chr6 27036914 27037054 -162242500 + L1MC4a LINE L1 5687 5813 -1995 840 146 0 36 chr6 27037054 27037191 -162242363 + FLAM_A SINE Alu 1 132 -1 555 234 26 75 chr6 27037191 27037276 -162242278 + L1MC4a LINE L1 5813 5901 -1907 535 219 109 57 chr6 27037486 27037590 -162241964 - MIR SINE MIR 0 262 165 2439 113 73 14 chr6 27037590 27037934 -162241620 - THE1B LTR MaLR 0 364 1 535 219 109 57 chr6 27037934 27038021 -162241533 - MIR SINE MIR -97 165 61 978 322 79 49 chr6 27038286 27038932 -162240622 - L3 LINE CR1 -729 848 174 2119 122 0 3 chr6 27038932 27039220 -162240334 + AluSc SINE Alu 1 287 -22 978 322 79 49 chr6 27039220 27039333 -162240221 - L3 LINE CR1 -1403 174 66 4283 123 18 5 chr6 27039333 27039957 -162239597 - MER41B LTR ERV1 0 635 4 2327 100 0 13 chr6 27040042 27040353 -162239201 - AluSx SINE Alu -5 307 1 1658 97 0 21 chr6 27041073 27041310 -162238244 - MER4E LTR ERV1 0 766 535 1494 104 135 12 chr6 27041301 27041560 -162237994 - MER4B LTR ERV1 -319 291 1 * 631 195 148 20 chr6 27041564 27041713 -162237841 + MER45A DNA AcHobo 10 177 -1 1809 158 47 0 chr6 27042325 27042623 -162236931 + AluSx SINE Alu 1 312 0 620 228 152 16 chr6 27042668 27042852 -162236702 + MER58C DNA MER1_type 7 215 0 1259 147 72 92 chr6 27042943 27043052 -162236502 + LTR54 LTR ERV1 1 111 -399 1814 164 7 0 chr6 27043052 27043350 -162236204 + AluJb SINE Alu 1 300 -12 1259 147 72 92 chr6 27043350 27043532 -162236022 + LTR54 LTR ERV1 111 286 -224 333 0 0 0 chr6 27043534 27043571 -162235983 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1928 117 4 11 chr6 27043574 27043847 -162235707 - AluSx SINE Alu -37 275 5 420 202 53 0 chr6 27043897 27043991 -162235563 + MER57A LTR ERV1 301 399 -4 1891 131 23 107 chr6 27044365 27044888 -162234666 - MER52C LTR ERV1 -699 579 1 260 186 34 34 chr6 27044888 27044946 -162234608 + MER97c DNA MER1_type? 172 229 -861 2444 110 27 54 chr6 27044959 27045369 -162234185 + MSTB1 LTR MaLR 1 399 -33 2153 113 3 0 chr6 27045369 27045661 -162233893 - AluSx SINE Alu -19 293 1 1259 171 91 48 chr6 27045661 27045940 -162233614 + MER97b DNA MER1_type? 468 766 -287 2227 87 47 0 chr6 27045940 27046239 -162233315 + AluSp SINE Alu 1 313 0 1259 171 91 48 chr6 27046239 27046310 -162233244 + MER97b DNA MER1_type? 766 833 -220 971 145 23 41 chr6 27046341 27046513 -162233041 - FRAM SINE Alu -8 168 1 452 225 48 48 chr6 27046532 27046719 -162232835 + MER97c DNA MER1_type? 904 1090 0 337 329 140 15 chr6 27046735 27047106 -162232448 + L2 LINE L2 1548 1871 -1443 2240 114 0 0 chr6 27047106 27047404 -162232150 - AluSx SINE Alu -14 298 1 337 329 140 15 chr6 27047404 27047602 -162231952 + L2 LINE L2 1871 2200 -1114 205 383 32 11 chr6 27047588 27047682 -162231872 - MIR SINE MIR -59 149 54 * 211 257 76 132 chr6 27047787 27047931 -162231623 + L2 LINE L2 2957 3092 -180 381 250 42 42 chr6 27048119 27048239 -162231315 + L2 LINE L2 3153 3272 0 4082 157 103 26 chr6 27048252 27049016 -162230538 - pTR5 LTR ERV1 0 2606 1524 2788 169 15 26 chr6 27049031 27049642 -162229912 - pTR5 LTR ERV1 -1093 1345 742 198 256 26 64 chr6 27049711 27049789 -162229765 + L3 LINE CR1 1493 1567 -10 1668 140 129 0 chr6 27050321 27050585 -162228969 - AluJo SINE Alu -4 298 1 1924 127 0 14 chr6 27050844 27051127 -162228427 - AluSx SINE Alu -4 308 30 1756 139 43 0 chr6 27051237 27051536 -162228018 + AluSx SINE Alu 1 312 0 271 115 0 4 chr6 27051575 27051621 -162227933 + Alu SINE Alu 1 38 -270 1993 125 4 4 chr6 27051747 27052028 -162227526 - AluSx SINE Alu -31 281 1 2173 120 0 3 chr6 27052033 27052333 -162227221 - AluSc SINE Alu -10 299 1 1026 112 0 0 chr6 27052333 27052467 -162227087 - AluSq/x SINE Alu -177 135 2 2319 92 0 10 chr6 27052468 27052771 -162226783 - AluSq SINE Alu -13 300 1 23 0 0 0 chr6 27052771 27052794 -162226760 + AT_rich Low_complexity Low_complexity 1 23 0 1650 182 0 27 chr6 27052843 27053020 -162226534 - AluJo SINE Alu -21 291 124 240 35 0 0 chr6 27053020 27053049 -162226505 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1650 182 0 27 chr6 27053049 27053168 -162226386 - AluJo SINE Alu -188 124 3 2441 91 0 0 chr6 27053199 27053507 -162226047 + AluY SINE Alu 1 308 -3 342 0 0 0 chr6 27053540 27053578 -162225976 + (TG)n Simple_repeat Simple_repeat 1 38 0 331 50 0 0 chr6 27053578 27053618 -162225936 - AluY SINE Alu -21 281 242 901 78 20 85 chr6 27053618 27053771 -162225783 - AluY SINE Alu -139 172 30 927 259 130 63 chr6 27053771 27054036 -162225518 - L1MC4a LINE L1 -1918 5890 5591 2556 69 0 16 chr6 27054036 27054354 -162225200 + AluSq SINE Alu 1 313 0 927 259 130 63 chr6 27054354 27054466 -162225088 - L1MC4a LINE L1 -2217 5591 5488 1132 245 86 16 chr6 27054468 27054967 -162224587 - MLT1E LTR MaLR -2 591 5 819 244 22 9 chr6 27054972 27055201 -162224353 - L1MC4a LINE L1 -2317 5491 5260 239 193 83 147 chr6 27055265 27055374 -162224180 - Charlie8 DNA MER1_type -2300 117 16 2441 65 3 10 chr6 27055444 27055751 -162223803 - AluY SINE Alu -6 305 1 180 0 0 0 chr6 27055915 27055935 -162223619 + (TAAAAA)n Simple_repeat Simple_repeat 5 24 0 712 186 9 0 chr6 27055964 27056107 -162223447 - AluSg/x SINE Alu 0 313 170 2177 105 0 10 chr6 27056227 27056521 -162223033 + AluSg SINE Alu 1 291 -19 353 246 107 109 chr6 27056521 27056641 -162222913 - L1MC5 LINE L1 -39 7922 7803 1098 196 33 9 chr6 27056641 27056855 -162222699 + MER20 DNA MER1_type 1 219 0 353 246 107 109 chr6 27056855 27057196 -162222358 - L1MC5 LINE L1 -158 7803 7462 1241 52 0 13 chr6 27057232 27057386 -162222168 + AluSg/x SINE Alu 156 307 -5 249 264 0 42 chr6 27057439 27057511 -162222043 + L2 LINE L2 3240 3308 -5 291 221 147 21 chr6 27058896 27058991 -162220563 + MER112 DNA MER1_type 148 254 -6 2037 90 0 0 chr6 27059094 27059350 -162220204 - AluSx SINE Alu -17 295 40 547 76 0 0 chr6 27059367 27059433 -162220121 - AluS SINE Alu -246 67 2 1151 186 102 3 chr6 27060453 27060738 -162218816 - L1MC4a LINE L1 -1601 4545 4233 22 23 0 45 chr6 27061194 27061210 -162218344 + AT_rich Low_complexity Low_complexity 1 16 -26 1446 168 24 28 chr6 27061210 27061501 -162218053 + AluJo SINE Alu 1 290 -22 22 23 0 45 chr6 27061501 27061528 -162218026 + AT_rich Low_complexity Low_complexity 16 42 0 31 68 0 0 chr6 27061729 27061788 -162217766 + AT_rich Low_complexity Low_complexity 1 59 0 409 214 34 43 chr6 27061792 27061909 -162217645 - L1MC5 LINE L1 -109 7852 7737 337 278 61 35 chr6 27061977 27062092 -162217462 + MIR3 SINE MIR 42 159 -49 2113 113 17 10 chr6 27063911 27064213 -162215341 + AluSx SINE Alu 2 305 -7 26 0 0 0 chr6 27064213 27064239 -162215315 + AT_rich Low_complexity Low_complexity 1 26 0 1606 191 24 14 chr6 27064797 27065091 -162214463 + AluJo SINE Alu 1 297 -15 303 185 0 0 chr6 27065428 27065482 -162214072 - MIR SINE MIR -70 138 85 2582 233 61 40 chr6 27065939 27066807 -162212747 + L1MC4 LINE L1 6699 7584 -458 21 71 0 0 chr6 27066927 27066969 -162212585 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr6 27067045 27067077 -162212477 + AT_rich Low_complexity Low_complexity 1 32 0 537 281 65 48 chr6 27067632 27067863 -162211691 + MIR SINE MIR 28 262 0 193 326 21 63 chr6 27069227 27069322 -162210232 + MER5A DNA MER1_type 74 164 -25 2265 97 10 0 chr6 27069679 27069977 -162209577 - AluSq SINE Alu -12 301 1 1593 155 34 0 chr6 27070030 27070294 -162209260 - AluJb SINE Alu -39 273 1 210 176 118 0 chr6 27070301 27070352 -162209202 + MIR SINE MIR 132 188 -74 509 213 94 0 chr6 27070407 27070534 -162209020 + MER3 DNA MER1_type 1 139 -70 707 203 174 0 chr6 27070807 27071048 -162208506 + L1ME1 LINE L1 4997 5279 -867 2147 220 95 14 chr6 27071053 27071631 -162207923 + L1ME1 LINE L1 5357 5981 -185 1834 158 3 10 chr6 27071772 27072070 -162207484 + AluSx SINE Alu 1 296 -16 2128 130 13 0 chr6 27072305 27072612 -162206942 + AluSx SINE Alu 1 311 -1 714 256 143 12 chr6 27072657 27072993 -162206561 + L1MC/D LINE L1 3712 4091 -2055 948 218 107 44 chr6 27073317 27073588 -162205966 + LTR16C LTR ERVL 196 483 -8 280 285 56 42 chr6 27073863 27074007 -162205547 + HAL1 LINE L1 2 147 -2360 636 240 45 0 chr6 27074047 27074201 -162205353 + L1MC/D LINE L1 5616 5776 -2032 322 235 15 0 chr6 27074201 27074269 -162205285 - Tigger2a DNA MER2_type 0 444 376 1337 73 11 6 chr6 27074271 27074450 -162205104 - AluSg/x SINE Alu 0 312 133 2199 125 3 3 chr6 27074493 27074805 -162204749 - AluSx SINE Alu 0 312 1 1659 137 59 7 chr6 27074834 27075105 -162204449 - AluJo SINE Alu -27 285 1 410 255 179 0 chr6 27075113 27075219 -162204335 - FLAM_A SINE Alu -8 125 1 2094 133 29 55 chr6 27075223 27075349 -162204205 - Tigger2a DNA MER2_type -2336 372 244 2267 78 31 3 chr6 27075349 27075642 -162203912 - AluSc SINE Alu -8 301 1 2094 133 29 55 chr6 27075642 27075897 -162203657 - Tigger2a DNA MER2_type -2464 244 1 1105 262 141 11 chr6 27076368 27076760 -162202794 + HAL1 LINE L1 1597 2061 -446 2262 102 0 10 chr6 27076760 27077064 -162202490 + AluSg SINE Alu 1 301 -9 1105 262 141 11 chr6 27077064 27077140 -162202414 + HAL1 LINE L1 2061 2126 -381 833 144 8 30 chr6 27077163 27077295 -162202259 - FLAM_C SINE Alu -14 129 1 859 223 81 58 chr6 27077298 27077643 -162201911 + HAL1 LINE L1 2155 2507 0 726 147 0 9 chr6 27077676 27077785 -162201769 + FLAM_C SINE Alu 11 118 -25 575 200 9 19 chr6 27077834 27077939 -162201615 + FRAM SINE Alu 1 98 -78 640 188 0 18 chr6 27077940 27078052 -162201502 + LTR8 LTR ERV1 533 642 -49 481 193 0 0 chr6 27078070 27078158 -162201396 + AluJ/FRAM SINE Alu 225 312 0 22 0 0 0 chr6 27079159 27079181 -162200373 + AT_rich Low_complexity Low_complexity 1 22 0 3436 186 12 67 chr6 27079402 27080133 -162199421 - LTR8 LTR ERV1 0 691 1 1571 152 54 51 chr6 27180741 27181077 -162098477 + MSTA LTR MaLR 90 426 -2 662 189 26 26 chr6 27181078 27181231 -162098323 + MER2 DNA MER2_type 168 320 -25 861 181 63 19 chr6 27181242 27181447 -162098107 - L1MC4 LINE L1 -1364 6678 6465 625 257 102 82 chr6 27182640 27182938 -162096616 - L1ME4a LINE L1 -96 6025 5715 1677 162 55 17 chr6 27182938 27183228 -162096326 - AluJb SINE Alu -11 301 1 625 257 102 82 chr6 27183228 27183330 -162096224 - L1ME4a LINE L1 -406 5715 5617 219 333 0 17 chr6 27183837 27183897 -162095657 + L3b LINE CR1 1515 1573 -10 1801 181 13 0 chr6 27184146 27184444 -162095110 - AluSx SINE Alu -5 307 6 234 0 0 0 chr6 27184764 27184790 -162094764 + (TG)n Simple_repeat Simple_repeat 1 26 0 1949 176 0 6 chr6 27185228 27185540 -162094014 + AluSx SINE Alu 2 311 -1 1979 138 0 0 chr6 27185549 27185824 -162093730 + AluSx SINE Alu 1 275 -37 192 40 0 0 chr6 27185828 27185853 -162093701 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1566 202 31 22 chr6 27186138 27186588 -162092966 - L1ME LINE L1 -3549 2531 2078 1775 177 0 0 chr6 27186595 27186907 -162092647 + AluJb SINE Alu 1 312 0 424 336 41 31 chr6 27187187 27187505 -162092049 + MER68 LTR ERV1 242 562 0 2194 129 0 19 chr6 27187533 27187850 -162091704 - AluSx SINE Alu -1 311 1 331 284 55 9 chr6 27187850 27187959 -162091595 - L1ME LINE L1 -4152 2109 1996 852 274 34 70 chr6 27187970 27188406 -162091148 - L1ME LINE L1 -5219 851 477 2688 26 0 3 chr6 27188406 27188716 -162090838 - AluY SINE Alu -2 309 1 852 274 34 70 chr6 27188716 27189059 -162090495 - L1ME LINE L1 -5593 477 123 301 282 80 15 chr6 27189112 27189507 -162090047 - L1MCc LINE L1 -4958 1465 1176 277 242 76 38 chr6 27190026 27190183 -162089371 - L1MCc LINE L1 -6236 187 25 1988 123 56 0 chr6 27190221 27190506 -162089048 + AluSx SINE Alu 1 301 -11 1545 185 75 4 chr6 27190526 27190807 -162088747 + AluJb SINE Alu 1 301 -11 263 269 214 55 chr6 27190875 27191020 -162088534 + MIR SINE MIR 75 242 -20 339 318 34 27 chr6 27191022 27191170 -162088384 - L2 LINE L2 -1 3312 3164 244 284 88 34 chr6 27191337 27191485 -162088069 + MLT1J LTR MaLR 1 156 -355 215 194 32 0 chr6 27191538 27191600 -162087954 + (TA)n Simple_repeat Simple_repeat 1 64 0 420 20 0 0 chr6 27191625 27191674 -162087880 + (CA)n Simple_repeat Simple_repeat 2 50 0 371 271 16 80 chr6 27191762 27191950 -162087604 + MLT1J LTR MaLR 328 503 -8 271 238 173 18 chr6 27191956 27192124 -162087430 + L1ME LINE L1 5277 5470 -889 300 287 66 16 chr6 27192182 27192304 -162087250 + L1ME LINE L1 5692 5819 -302 1758 154 54 7 chr6 27193331 27193610 -162085944 + AluJb SINE Alu 1 292 -20 28 99 0 0 chr6 27193712 27193803 -162085751 + AT_rich Low_complexity Low_complexity 1 91 0 520 221 131 14 chr6 27194407 27194437 -162085117 + MER5B DNA MER1_type 17 42 -136 2014 75 0 8 chr6 27194437 27194689 -162084865 - AluSc SINE Alu -14 295 46 520 221 131 14 chr6 27194689 27194803 -162084751 + MER5B DNA MER1_type 42 178 0 22 0 0 0 chr6 27194996 27195018 -162084536 + AT_rich Low_complexity Low_complexity 1 22 0 674 205 0 8 chr6 27195018 27195145 -162084409 - FLAM_C SINE Alu -17 126 1 250 333 56 0 chr6 27195348 27195456 -162084098 - MIR SINE MIR -74 188 75 1824 182 0 10 chr6 27196124 27196432 -162083122 - AluJb SINE Alu -7 305 1 1116 145 70 35 chr6 27196516 27196716 -162082838 + AluJo SINE Alu 83 289 -23 551 306 57 26 chr6 27196979 27197208 -162082346 + MIR SINE MIR 21 256 -6 26 0 0 0 chr6 27198106 27198132 -162081422 + AT_rich Low_complexity Low_complexity 1 26 0 545 118 0 35 chr6 27198570 27198655 -162080899 + AluJ/FLAM SINE Alu 1 82 -230 2134 120 13 3 chr6 27198723 27199023 -162080531 + AluSx SINE Alu 1 303 -9 358 304 154 8 chr6 27199058 27199311 -162080243 + L1ME LINE L1 5515 5804 -317 1952 142 0 0 chr6 27199333 27199608 -162079946 + AluSx SINE Alu 22 296 -16 301 374 82 0 chr6 27199881 27200052 -162079502 - L3b LINE CR1 -126 1457 1273 1879 183 0 3 chr6 27200349 27200661 -162078893 + AluJo SINE Alu 1 311 -1 2256 112 0 0 chr6 27200679 27200973 -162078581 + AluSx SINE Alu 1 294 -18 240 239 15 60 chr6 27201337 27201404 -162078150 + MIR SINE MIR 38 101 -107 34 42 0 0 chr6 27202294 27202342 -162077212 + AT_rich Low_complexity Low_complexity 1 48 0 35 63 0 0 chr6 27202986 27203049 -162076505 + AT_rich Low_complexity Low_complexity 1 63 0 357 24 0 0 chr6 27203751 27203793 -162075761 + (TTG)n Simple_repeat Simple_repeat 1 42 0 1977 106 0 63 chr6 27203793 27204094 -162075460 + AluSx SINE Alu 6 287 -25 378 282 120 7 chr6 27204113 27204255 -162075299 - MIR SINE MIR -2 260 103 611 146 31 0 chr6 27204262 27204358 -162075196 + FRAM SINE Alu 55 153 -23 186 239 0 22 chr6 27204831 27204877 -162074677 + MIR SINE MIR 107 151 -111 391 298 86 71 chr6 27205002 27205169 -162074385 + L1MEc LINE L1 511 674 -5722 743 202 16 0 chr6 27205169 27205298 -162074256 + FLAM_A SINE Alu 1 131 -2 391 298 86 71 chr6 27205298 27205469 -162074085 + L1MEc LINE L1 674 854 -5542 24 0 0 0 chr6 27206037 27206061 -162073493 + AT_rich Low_complexity Low_complexity 1 24 0 2438 84 0 0 chr6 27206061 27206372 -162073182 + AluY SINE Alu 1 311 0 370 0 40 0 chr6 27206396 27206446 -162073108 + (TG)n Simple_repeat Simple_repeat 1 52 0 2732 77 61 56 chr6 27206805 27207249 -162072305 + L1MA5A LINE L1 5846 6291 -6 24 53 0 0 chr6 27207251 27207289 -162072265 + AT_rich Low_complexity Low_complexity 1 38 0 1563 82 134 0 chr6 27207292 27207523 -162072031 + AluY SINE Alu 1 262 -49 963 106 0 0 chr6 27207525 27207667 -162071887 + (GAAA)n Simple_repeat Simple_repeat 2 143 0 2083 133 0 10 chr6 27207671 27207973 -162071581 + AluSg SINE Alu 2 300 -10 193 79 184 0 chr6 27208141 27208179 -162071375 + MIR SINE MIR 212 256 -6 272 228 165 25 chr6 27208290 27208369 -162071185 + MIR SINE MIR 56 123 -85 1352 216 34 60 chr6 27208477 27208861 -162070693 + MLT1B LTR MaLR 6 379 -11 1090 24 16 0 chr6 27208920 27209047 -162070507 - AluY SINE Alu -1 310 182 198 103 0 0 chr6 27209070 27209099 -162070455 + (A)n Simple_repeat Simple_repeat 1 29 0 2169 99 21 0 chr6 27209399 27209683 -162069871 + AluSq SINE Alu 7 296 -17 1194 71 0 22 chr6 27209692 27209874 -162069680 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 285 246 66 0 chr6 27209961 27210022 -162069532 - L2 LINE L2 0 3313 3249 479 293 52 11 chr6 27210242 27210416 -162069138 + MIR SINE MIR 82 262 0 1382 217 82 85 chr6 27211879 27211986 -162067568 + MLT1E3 LTR MaLR 61 167 -459 1115 105 52 0 chr6 27211986 27212171 -162067383 + L1PA8 LINE L1 5994 6186 0 297 0 0 0 chr6 27212170 27212203 -162067351 + (GA)n Simple_repeat Simple_repeat 2 34 0 1382 217 82 85 chr6 27212171 27212205 -162067349 + MLT1E3 LTR MaLR 167 200 -426 1998 136 3 23 chr6 27212205 27212515 -162067039 + AluJb SINE Alu 1 304 -8 186 43 0 0 chr6 27212515 27212538 -162067016 + (GA)n Simple_repeat Simple_repeat 2 24 0 1382 217 82 85 chr6 27212538 27212836 -162066718 + MLT1E3 LTR MaLR 198 452 -174 535 189 0 9 chr6 27212955 27213061 -162066493 - L1ME1 LINE L1 -261 5905 5801 988 211 0 0 chr6 27213072 27213243 -162066311 - AluJb SINE Alu -5 307 137 2501 67 0 0 chr6 27213246 27213546 -162066008 - AluY SINE Alu -11 300 1 1279 231 16 37 chr6 27213549 27213926 -162065628 - L1M4 LINE L1 -1902 4244 3876 1092 251 31 25 chr6 27213923 27214370 -162065184 - L1M4 LINE L1 -2629 3517 3068 * 978 291 71 42 chr6 27214359 27214906 -162064648 - L1MEc LINE L1 -5795 601 39 * 1505 282 81 36 chr6 27214922 27215753 -162063801 - HAL1 LINE L1 -1542 965 98 2276 97 0 23 chr6 27215753 27216061 -162063493 - AluSg1 SINE Alu -8 301 1 200 360 0 0 chr6 27216638 27216724 -162062830 + (CCA)n Simple_repeat Simple_repeat 2 87 0 242 379 0 16 chr6 27216743 27216925 -162062629 + (CCA)n Simple_repeat Simple_repeat 2 180 0 1666 172 41 0 chr6 27216992 27217282 -162062272 + AluJo SINE Alu 1 302 -10 1918 149 0 19 chr6 27217385 27217693 -162061861 - AluJb SINE Alu -10 302 1 912 173 78 31 chr6 27218090 27218281 -162061273 - L1MC2 LINE L1 -16 6328 6129 216 372 59 30 chr6 27218379 27218718 -162060836 + L2 LINE L2 1732 2080 -1234 279 0 0 0 chr6 27218732 27218763 -162060791 + (TC)n Simple_repeat Simple_repeat 2 32 0 845 230 5 58 chr6 27218767 27218958 -162060596 + MLT1F LTR MaLR 6 186 -356 211 265 0 0 chr6 27219012 27219061 -162060493 + L2 LINE L2 3261 3309 -4 2086 107 0 24 chr6 27219394 27219706 -162059848 + AluSx SINE Alu 1 305 0 234 263 84 31 chr6 27219727 27219844 -162059710 + MIR SINE MIR 33 139 -69 470 244 48 77 chr6 27220224 27220433 -162059121 - L1MC5 LINE L1 -32 7929 7727 729 174 0 41 chr6 27221016 27221137 -162058417 - FLAM_C SINE Alu -26 117 2 207 311 131 0 chr6 27222166 27222288 -162057266 - L2 LINE L2 -6 3307 3170 276 154 0 0 chr6 27223522 27223574 -162055980 + GA-rich Low_complexity Low_complexity 2 53 0 23 0 0 0 chr6 27223777 27223800 -162055754 + GC_rich Low_complexity Low_complexity 1 23 0 312 27 0 0 chr6 27225417 27225454 -162054100 + (CA)n Simple_repeat Simple_repeat 1 37 0 2463 82 0 0 chr6 27226113 27226419 -162053135 + AluSp SINE Alu 1 306 -7 265 211 276 0 chr6 27226941 27227017 -162052537 - Charlie7 DNA MER1_type -2515 97 1 294 288 234 49 chr6 27227032 27227258 -162052296 + L2 LINE L2 3005 3272 0 1999 137 0 17 chr6 27227998 27228298 -162051256 - AluSx SINE Alu -17 295 1 186 341 47 54 chr6 27228539 27228668 -162050886 + L2 LINE L2 3139 3266 -6 2190 116 7 3 chr6 27228708 27229010 -162050544 + AluSx SINE Alu 1 303 -9 1918 149 0 3 chr6 27230165 27230453 -162049101 - AluJo SINE Alu -25 287 1 724 130 0 0 chr6 27231714 27231814 -162047740 - HY3 scRNA scRNA -1 100 1 858 263 21 29 chr6 27231820 27232063 -162047491 - MIR SINE MIR -1 261 21 724 304 103 59 chr6 27232189 27232597 -162046957 - L2 LINE L2 -17 3255 2830 201 307 40 30 chr6 27232800 27232901 -162046653 + MIR SINE MIR 149 250 -12 565 215 74 13 chr6 27233154 27233303 -162046251 + MER103 DNA DNA 2 159 -7 3771 166 67 15 chr6 27233661 27234381 -162045173 - L1MD1 LINE L1 0 6242 5482 1771 146 11 8 chr6 27234381 27234649 -162044905 - AluJb SINE Alu -17 295 27 3771 166 67 15 chr6 27234649 27234663 -162044891 - L1MD1 LINE L1 -760 5482 5470 1287 131 49 134 chr6 27235086 27235392 -162044162 - AluJo SINE Alu -32 280 1 360 0 0 0 chr6 27237546 27237586 -162041968 + (TG)n Simple_repeat Simple_repeat 2 41 0 1474 194 25 0 chr6 27237666 27237945 -162041609 - AluJo SINE Alu -12 300 15 333 93 107 0 chr6 27237949 27238024 -162041530 + CT-rich Low_complexity Low_complexity 4 86 0 1700 178 14 0 chr6 27238026 27238302 -162041252 - AluJb SINE Alu -32 280 1 773 336 121 12 chr6 27238678 27239101 -162040453 - L3 LINE CR1 -11 1566 1098 21 36 0 0 chr6 27239494 27239522 -162040032 + AT_rich Low_complexity Low_complexity 1 28 0 379 206 213 62 chr6 27239598 27239758 -162039796 - L1ME LINE L1 -314 5807 5624 386 0 0 39 chr6 27241164 27241215 -162038339 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 279 0 0 0 chr6 27241216 27241247 -162038307 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 640 207 8 16 chr6 27241251 27241372 -162038182 - FLAM_A SINE Alu -13 120 1 796 271 9 9 chr6 27242253 27242471 -162037083 + MIR SINE MIR 45 262 0 21 0 0 0 chr6 27242550 27242571 -162036983 + AT_rich Low_complexity Low_complexity 1 21 0 2297 88 10 0 chr6 27243036 27243332 -162036222 - AluSp SINE Alu -14 299 1 2310 105 0 3 chr6 27243448 27243752 -162035802 - AluSx SINE Alu -9 303 1 962 197 22 75 chr6 27243810 27243974 -162035580 - MER20 DNA MER1_type -3 216 66 2322 92 0 10 chr6 27243974 27244277 -162035277 + AluSx SINE Alu 1 300 -12 962 197 22 75 chr6 27244277 27244340 -162035214 - MER20 DNA MER1_type -153 66 1 960 178 15 61 chr6 27244589 27244665 -162034889 + MER5A DNA MER1_type 1 79 -110 1732 165 62 0 chr6 27244665 27244956 -162034598 + AluSx SINE Alu 1 309 -3 960 178 15 61 chr6 27244956 27245076 -162034478 + MER5A DNA MER1_type 79 188 -1 204 229 21 0 chr6 27245940 27245988 -162033566 + MER5B DNA MER1_type 1 49 -129 24 0 0 0 chr6 27247522 27247546 -162032008 + AT_rich Low_complexity Low_complexity 1 24 0 369 282 69 95 chr6 27248387 27248649 -162030905 + L3 LINE CR1 1244 1498 -79 2451 127 3 9 chr6 27248649 27248988 -162030566 - MER1B DNA MER1_type 0 337 1 2335 174 46 60 chr6 27250206 27250505 -162029049 - L1MB4 LINE L1 -6 6174 5885 2151 159 0 26 chr6 27250505 27250850 -162028704 + MER1B DNA MER1_type 2 337 0 2335 174 46 60 chr6 27250850 27251135 -162028419 - L1MB4 LINE L1 -295 5885 5598 2217 93 10 7 chr6 27251160 27251461 -162028093 - AluSq SINE Alu -11 302 1 2304 96 3 3 chr6 27252658 27252960 -162026594 - AluSg SINE Alu -8 302 1 269 291 109 18 chr6 27253191 27253301 -162026253 - L2 LINE L2 -4 3268 3149 892 125 29 29 chr6 27253332 27253468 -162026086 - AluJo SINE Alu -176 136 1 877 164 105 0 chr6 27253505 27253657 -162025897 + AluSg/x SINE Alu 135 302 -8 2415 169 18 39 chr6 27253658 27254047 -162025507 - L1MB7 LINE L1 -28 6156 5779 2222 116 0 0 chr6 27254047 27254348 -162025206 - AluSg SINE Alu -9 301 1 2415 169 18 39 chr6 27254348 27254473 -162025081 - L1MB7 LINE L1 -405 5779 5653 226 356 10 29 chr6 27254541 27254645 -162024909 - L2 LINE L2 -176 3096 2995 963 249 33 4 chr6 27254652 27254897 -162024657 - MER112 DNA MER1_type -4 252 1 185 306 65 0 chr6 27255051 27255113 -162024441 - L2 LINE L2 0 3313 3248 1877 112 0 8 chr6 27255220 27255488 -162024066 + AluSx SINE Alu 42 307 -5 502 276 53 88 chr6 27255490 27255922 -162023632 + HAL1 LINE L1 16 432 -2075 234 0 0 0 chr6 27257186 27257212 -162022342 + (A)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr6 27257410 27257439 -162022115 + AT_rich Low_complexity Low_complexity 1 29 0 2242 75 0 0 chr6 27258500 27258767 -162020787 + AluSg SINE Alu 28 294 -16 264 243 0 0 chr6 27258798 27258872 -162020682 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 497 274 128 5 chr6 27259276 27259471 -162020083 - MIR SINE MIR -1 261 45 405 214 165 0 chr6 27260105 27260262 -162019292 + MER5A DNA MER1_type 4 189 0 2156 98 35 0 chr6 27260704 27260990 -162018564 - AluSx SINE Alu -16 296 1 21 0 0 0 chr6 27260990 27261011 -162018543 + AT_rich Low_complexity Low_complexity 1 21 0 621 168 47 0 chr6 27261011 27261118 -162018436 - HY1 scRNA scRNA 0 112 1 1403 183 55 48 chr6 27261425 27261715 -162017839 - AluJo SINE Alu -15 297 6 1281 179 50 56 chr6 27261843 27262145 -162017409 - AluJo SINE Alu -12 300 1 35 24 0 0 chr6 27263602 27263644 -162015910 + AT_rich Low_complexity Low_complexity 1 42 0 930 88 8 0 chr6 27264045 27264170 -162015384 - AluSg/x SINE Alu -8 304 179 297 266 11 11 chr6 27264751 27264845 -162014709 - MIR SINE MIR -2 260 167 1588 118 45 5 chr6 27265075 27265295 -162014259 + MER30 DNA MER1_type 1 229 -1 32 43 0 0 chr6 27265902 27265948 -162013606 + AT_rich Low_complexity Low_complexity 1 46 0 2320 83 7 0 chr6 27265948 27266238 -162013316 - AluY SINE Alu -19 292 1 663 192 15 15 chr6 27266241 27266371 -162013183 - FLAM_A SINE Alu -3 130 1 2215 120 0 0 chr6 27266403 27266703 -162012851 - AluSx SINE Alu -12 300 1 240 185 0 0 chr6 27266757 27266811 -162012743 + (CA)n Simple_repeat Simple_repeat 1 54 0 1733 104 0 89 chr6 27267582 27267862 -162011692 + AluJo SINE Alu 1 255 -57 398 247 297 27 chr6 27268861 27269262 -162010292 - L2 LINE L2 -1 3312 2804 398 287 255 30 chr6 27269928 27270159 -162009395 - L2 LINE L2 0 3313 3135 2166 97 3 3 chr6 27270159 27270448 -162009106 - AluSc SINE Alu -20 289 1 398 287 255 30 chr6 27270448 27270796 -162008758 - L2 LINE L2 -178 3135 2866 865 240 33 0 chr6 27270796 27270979 -162008575 + MER5A DNA MER1_type 1 189 0 398 287 255 30 chr6 27270979 27271096 -162008458 - L2 LINE L2 -447 2866 2460 492 132 29 0 chr6 27271115 27271183 -162008371 - AluSg/x SINE Alu -26 284 215 569 271 112 93 chr6 27271196 27271635 -162007919 - L2 LINE L2 -901 2413 1967 185 322 113 0 chr6 27272274 27272389 -162007165 - MIR SINE MIR -16 246 119 26 0 0 0 chr6 27273085 27273111 -162006443 + AT_rich Low_complexity Low_complexity 1 26 0 486 291 37 63 chr6 27273363 27273631 -162005923 + Charlie8 DNA MER1_type 1 261 -2156 944 96 0 89 chr6 27274838 27274984 -162004570 + FLAM_C SINE Alu 1 133 0 189 0 0 0 chr6 27275169 27275190 -162004364 + (T)n Simple_repeat Simple_repeat 1 21 0 321 378 41 12 chr6 27275695 27275867 -162003687 + L2 LINE L2 2581 2757 -557 671 126 0 63 chr6 27276308 27276419 -162003135 - FLAM_A SINE Alu -14 128 25 189 274 20 0 chr6 27276552 27276603 -162002951 - L2 LINE L2 0 3313 3262 786 266 154 11 chr6 27276608 27276984 -162002570 - L2 LINE L2 -631 2683 2254 417 86 0 0 chr6 27277015 27277073 -162002481 + (CA)n Simple_repeat Simple_repeat 2 59 0 293 231 128 60 chr6 27277187 27277304 -162002250 + MLT1K LTR MaLR 188 312 -276 417 173 36 101 chr6 27277489 27277561 -162001993 + MER103 DNA DNA 34 94 -72 1648 162 10 20 chr6 27277561 27277858 -162001696 + AluJo SINE Alu 1 294 -18 417 173 36 101 chr6 27277858 27277924 -162001630 + MER103 DNA DNA 94 163 -3 32 0 0 0 chr6 27278908 27278940 -162000614 + AT_rich Low_complexity Low_complexity 1 32 0 671 222 162 0 chr6 27280705 27280890 -161998664 + MIR SINE MIR 8 222 -40 283 238 0 60 chr6 27280957 27281041 -161998513 + L2 LINE L2 3234 3312 -1 2111 99 0 0 chr6 27282287 27282560 -161996994 + AluSx SINE Alu 33 305 -7 287 182 152 15 chr6 27284035 27284101 -161995453 + MIR SINE MIR 50 124 -138 243 0 0 0 chr6 27285058 27285085 -161994469 + (T)n Simple_repeat Simple_repeat 1 27 0 645 278 45 10 chr6 27285337 27285535 -161994019 - MIR SINE MIR -27 235 31 2004 112 29 0 chr6 27285722 27286000 -161993554 + AluSx SINE Alu 1 286 -26 318 232 126 46 chr6 27286540 27286691 -161992863 - MIR3 SINE MIR -41 167 5 281 259 0 0 chr6 27286730 27286784 -161992770 + MIR SINE MIR 23 76 -186 214 350 0 38 chr6 27287035 27287115 -161992439 + L3b LINE CR1 1503 1579 -4 6431 269 131 27 chr6 27287711 27289892 -161989662 + L2 LINE L2 2 2591 -722 2159 131 0 0 chr6 27289892 27290197 -161989357 - AluSx SINE Alu -7 305 1 6431 269 131 27 chr6 27290197 27290994 -161988560 + L2 LINE L2 2591 3304 -9 1400 207 7 3 chr6 27291873 27292158 -161987396 - L1MD3 LINE L1 0 7995 7710 4594 159 43 47 chr6 27292244 27292421 -161987133 - MER6 DNA MER2_type 0 865 689 2181 84 28 0 chr6 27292421 27292707 -161986847 - AluSx SINE Alu -13 299 6 4594 159 43 47 chr6 27292707 27292782 -161986772 - MER6 DNA MER2_type -176 689 615 2393 98 0 0 chr6 27292782 27293089 -161986465 + AluSc SINE Alu 1 307 -2 4594 159 43 47 chr6 27293089 27293704 -161985850 - MER6 DNA MER2_type -250 615 1 301 305 31 31 chr6 27293748 27293876 -161985678 + Charlie8 DNA MER1_type 19 146 -2271 2371 100 0 0 chr6 27294006 27294307 -161985247 - AluSc SINE Alu -8 301 1 484 297 130 23 chr6 27294542 27294842 -161984712 + MER102b DNA MER1_type 2 333 -8 1568 172 45 3 chr6 27295370 27295688 -161983866 + MER33 DNA MER1_type 1 324 0 439 316 107 20 chr6 27295917 27296113 -161983441 + MIR SINE MIR 2 214 -48 476 241 193 0 chr6 27297484 27297663 -161981891 - MIR SINE MIR 0 262 45 877 194 74 69 chr6 27298163 27298380 -161981174 + MER20 DNA MER1_type 2 219 0 1610 157 7 65 chr6 27298444 27298750 -161980804 - AluJo SINE Alu -15 297 10 300 303 0 0 chr6 27298870 27298946 -161980608 + MLT1L LTR MaLR 374 449 -166 196 320 61 48 chr6 27299063 27299210 -161980344 - L3 LINE CR1 -127 1450 1302 1011 213 22 100 chr6 27299651 27299970 -161979584 + AluYb8 SINE Alu 11 304 -14 638 144 48 24 chr6 27300045 27300170 -161979384 - L1MB2 LINE L1 -1 6170 6043 2836 19 0 0 chr6 27300328 27300637 -161978917 - AluYb8 SINE Alu -9 309 1 1877 167 0 7 chr6 27301594 27301888 -161977666 + AluSx SINE Alu 15 306 -6 812 198 146 28 chr6 27305915 27306221 -161973333 + MSTC LTR MaLR 1 368 -59 213 159 0 0 chr6 27306242 27306286 -161973268 + A-rich Low_complexity Low_complexity 1 44 0 331 167 0 0 chr6 27306308 27306362 -161973192 + MSTC LTR MaLR 342 395 -1 2019 115 18 0 chr6 27306673 27306975 -161972579 + AluSx SINE Alu 1 307 0 2215 138 0 0 chr6 27307033 27307345 -161972209 + AluSx SINE Alu 1 312 0 274 192 333 33 chr6 27307471 27307591 -161971963 + MER103 DNA DNA 8 163 -3 1469 171 120 116 chr6 27308033 27308225 -161971329 - L1MD2 LINE L1 -34 6325 6135 1627 154 33 40 chr6 27308225 27308524 -161971030 - AluJb SINE Alu -15 297 1 1469 171 120 116 chr6 27308524 27308807 -161970747 - L1MD2 LINE L1 -224 6135 5840 2097 99 0 3 chr6 27308834 27309116 -161970438 - AluSq SINE Alu -3 310 30 273 325 49 41 chr6 27309132 27309255 -161970299 - MIR3 SINE MIR -73 135 12 21 36 0 0 chr6 27309355 27309383 -161970171 + AT_rich Low_complexity Low_complexity 1 28 0 1534 199 10 29 chr6 27309833 27310139 -161969415 - AluJb SINE Alu -12 300 1 1359 187 56 49 chr6 27310293 27310577 -161968977 - AluJo SINE Alu -26 286 1 990 265 70 40 chr6 27310579 27310953 -161968601 + L2 LINE L2 2928 3312 -1 2078 121 0 4 chr6 27312059 27312340 -161967214 - AluSx SINE Alu -32 280 1 21 0 0 0 chr6 27313660 27313681 -161965873 + AT_rich Low_complexity Low_complexity 1 21 0 14394 192 46 19 chr6 27315056 27317870 -161961684 - L1PB3 LINE L1 -7 6204 3469 2181 96 10 7 chr6 27317870 27318162 -161961392 - AluSc SINE Alu -16 293 1 14394 192 46 19 chr6 27318162 27320372 -161959182 - L1PB3 LINE L1 -2742 3469 964 2128 122 3 0 chr6 27320372 27320660 -161958894 - AluSq SINE Alu -24 289 1 14394 192 46 19 chr6 27320660 27321647 -161957907 - L1PB3 LINE L1 -5247 964 6 3877 269 82 30 chr6 27321616 27323178 -161956376 - L1PA15-16 LINE L1 -5223 1640 9 * 640 317 32 18 chr6 27323226 27323447 -161956107 + MIR SINE MIR 18 241 -21 191 219 0 0 chr6 27323497 27323529 -161956025 - L2 LINE L2 -96 3176 3145 291 259 86 12 chr6 27323621 27323702 -161955852 - MER91C DNA MER1_type -30 110 24 1097 219 27 5 chr6 27324546 27324765 -161954789 - MER58A DNA MER1_type 0 224 1 250 321 92 9 chr6 27324996 27325105 -161954449 - L2 LINE L2 -5 3267 3150 2316 223 60 75 chr6 27325616 27326378 -161953176 - MER21B LTR ERV1 -62 869 27 1736 124 0 0 chr6 27326383 27326617 -161952937 - AluSx SINE Alu -17 295 62 786 71 0 0 chr6 27326617 27326715 -161952839 - LTR12 LTR ERV1 -2 712 615 381 147 54 76 chr6 27326724 27326816 -161952738 - LTR30 LTR ERV1 -75 624 230 1655 71 0 174 chr6 27326820 27327131 -161952423 - LTR12 LTR ERV1 -440 274 18 485 169 60 0 chr6 27327131 27327214 -161952340 - AluS SINE Alu -224 89 2 623 183 29 0 chr6 27327879 27327983 -161951571 + U6 snRNA snRNA 1 107 0 2159 94 3 3 chr6 27328111 27328419 -161951135 - AluSx SINE Alu 0 308 1 432 333 62 35 chr6 27329239 27329383 -161950171 - L2 LINE L2 -7 3265 3118 315 336 93 22 chr6 27329516 27329742 -161949812 - L2 LINE L2 -451 2863 2622 292 260 0 83 chr6 27329769 27329865 -161949689 - L2 LINE L2 -5 3308 3221 21 57 0 0 chr6 27330406 27330441 -161949113 + AT_rich Low_complexity Low_complexity 1 35 0 1841 130 41 4 chr6 27330553 27330823 -161948731 - AluSx SINE Alu -32 280 1 999 153 89 21 chr6 27330979 27331169 -161948385 + AluSg/x SINE Alu 98 300 -12 2393 73 10 7 chr6 27332399 27332699 -161946855 - AluSg SINE Alu -9 301 1 1500 186 0 44 chr6 27332702 27333018 -161946536 - AluJo SINE Alu 0 303 1 691 171 0 24 chr6 27333496 27333619 -161945935 - FLAM_A SINE Alu -11 131 12 23 0 0 0 chr6 27334389 27334412 -161945142 + AT_rich Low_complexity Low_complexity 1 23 0 336 111 0 0 chr6 27334418 27334472 -161945082 + (TA)n Simple_repeat Simple_repeat 2 55 0 1754 187 3 3 chr6 27334472 27334772 -161944782 - AluJb SINE Alu -12 300 1 2094 95 7 39 chr6 27334846 27335152 -161944402 - AluSx SINE Alu -16 296 1 602 157 0 111 chr6 27335730 27335883 -161943671 - MER3 DNA MER1_type -5 204 69 235 266 13 76 chr6 27335908 27335987 -161943567 - MIR SINE MIR -79 129 56 512 304 88 72 chr6 27336329 27337172 -161942382 + L2 LINE L2 2454 3313 0 449 329 144 35 chr6 27337421 27337908 -161941646 - L2 LINE L2 -562 2752 2213 21 0 0 0 chr6 27339997 27340018 -161939536 + AT_rich Low_complexity Low_complexity 1 21 0 542 117 0 0 chr6 27340074 27340151 -161939403 - U13 snRNA snRNA -27 77 1 2099 92 0 86 chr6 27340581 27340906 -161938648 + AluSc SINE Alu 1 297 -12 699 212 0 0 chr6 27341231 27341344 -161938210 + FLAM_A SINE Alu 2 114 -19 238 241 0 0 chr6 27343240 27343294 -161936260 - MER5A DNA MER1_type 0 189 136 444 123 0 0 chr6 27343969 27344042 -161935512 + (TG)n Simple_repeat Simple_repeat 2 74 0 801 313 153 10 chr6 27344137 27344537 -161935017 - L3 LINE CR1 -2 1575 1119 23 0 0 0 chr6 27344754 27344777 -161934777 + AT_rich Low_complexity Low_complexity 1 23 0 213 321 48 12 chr6 27344884 27344968 -161934586 - L2 LINE L2 -1 3271 3185 244 339 62 23 chr6 27345044 27345174 -161934380 + MIR SINE MIR 52 186 -76 2395 97 3 0 chr6 27345216 27345516 -161934038 + AluSp SINE Alu 1 301 -12 1429 132 117 60 chr6 27345537 27345818 -161933736 + AluJo SINE Alu 5 301 -11 543 245 7 60 chr6 27346229 27346380 -161933174 - MIR SINE MIR -64 198 56 187 167 0 0 chr6 27348217 27348247 -161931307 - L3 LINE CR1 -7 1570 1541 2557 77 0 0 chr6 27348292 27348603 -161930951 - AluSq SINE Alu -2 311 1 436 250 76 28 chr6 27348739 27348883 -161930671 - MIR3 SINE MIR -37 171 21 275 220 119 68 chr6 27351928 27352046 -161927508 + MIR SINE MIR 50 173 -89 594 302 80 9 chr6 27352906 27353118 -161926436 - MIR SINE MIR -4 258 32 22 0 0 0 chr6 27354030 27354052 -161925502 + AT_rich Low_complexity Low_complexity 1 22 0 262 293 35 9 chr6 27354328 27354444 -161925110 + (TA)n Simple_repeat Simple_repeat 1 119 0 245 267 70 35 chr6 27354533 27354619 -161924935 + MIR3 SINE MIR 85 173 -35 231 313 18 60 chr6 27355107 27355273 -161924281 + MIR SINE MIR 59 217 -45 662 192 181 6 chr6 27355670 27355847 -161923707 - MER3 DNA MER1_type 0 209 2 23 0 0 0 chr6 27356137 27356160 -161923394 + AT_rich Low_complexity Low_complexity 1 23 0 979 279 128 53 chr6 27356284 27357039 -161922515 + L2 LINE L2 2476 3309 -4 2278 107 3 0 chr6 27357530 27357828 -161921726 + AluSx SINE Alu 1 299 -13 526 294 29 7 chr6 27359031 27359167 -161920387 - L2 LINE L2 0 3272 3134 223 258 45 0 chr6 27359312 27359378 -161920176 - L2 LINE L2 -342 2930 2862 874 297 222 31 chr6 27359408 27360595 -161918959 - L2 LINE L2 -555 2759 1347 321 372 58 23 chr6 27360605 27360777 -161918777 - L2 LINE L2 -2129 1185 1008 527 244 160 6 chr6 27360865 27361021 -161918533 - MER5A DNA MER1_type -1 188 9 1834 156 30 7 chr6 27361021 27361323 -161918231 + AluJb SINE Alu 1 309 -3 182 278 44 56 chr6 27361329 27361419 -161918135 - L2 LINE L2 -2441 873 785 524 177 40 24 chr6 27361482 27361606 -161917948 - MIR SINE MIR -23 239 114 1036 183 75 11 chr6 27362114 27362321 -161917233 + AluJo SINE Alu 86 304 0 450 79 0 0 chr6 27362337 27362400 -161917154 + (TG)n Simple_repeat Simple_repeat 2 64 0 327 49 0 0 chr6 27363455 27363496 -161916058 + (TG)n Simple_repeat Simple_repeat 1 41 0 12517 162 31 43 chr6 27364507 27364843 -161914711 - Tigger1 DNA MER2_type 0 2418 2080 2325 91 3 0 chr6 27364843 27365139 -161914415 - AluSp SINE Alu -14 299 3 12517 162 31 43 chr6 27365139 27365414 -161914140 - Tigger1 DNA MER2_type -338 2080 1803 5995 52 1 3 chr6 27365414 27366163 -161913391 - L1PA6 LINE L1 -3 6151 5404 12517 162 31 43 chr6 27366163 27366571 -161912983 - Tigger1 DNA MER2_type -615 1803 1392 1964 88 44 15 chr6 27366571 27366844 -161912710 - AluY SINE Alu -10 301 21 12517 162 31 43 chr6 27366844 27368267 -161911287 - Tigger1 DNA MER2_type -1026 1392 3 318 320 56 118 chr6 27369250 27369860 -161909694 + L2 LINE L2 2716 3272 0 1539 146 100 0 chr6 27369949 27370209 -161909345 - AluJb SINE Alu -6 306 21 187 254 17 17 chr6 27370225 27370284 -161909270 - MIR SINE MIR -44 218 160 362 184 0 23 chr6 27371757 27371844 -161907710 + CT-rich Low_complexity Low_complexity 1 85 0 4537 198 71 47 chr6 27373384 27374769 -161904785 - Charlie1a DNA MER1_type -17 1438 21 770 244 98 10 chr6 27375189 27375394 -161904160 - MER58A DNA MER1_type -1 223 1 200 241 19 19 chr6 27376337 27376391 -161903163 + L2 LINE L2 3150 3203 -69 21 0 0 0 chr6 27378028 27378049 -161901505 + AT_rich Low_complexity Low_complexity 1 21 0 433 238 29 12 chr6 27378251 27378423 -161901131 + Charlie7 DNA MER1_type 2437 2611 -1 1355 78 16 11 chr6 27379364 27379555 -161899999 + AluSg/x SINE Alu 114 305 -7 817 233 75 17 chr6 27379728 27379968 -161899586 + MIR SINE MIR 6 259 -3 567 43 0 0 chr6 27380257 27380327 -161899227 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 1117 162 16 117 chr6 27380351 27380598 -161898956 - AluJb SINE Alu -90 222 1 315 280 57 29 chr6 27381698 27381873 -161897681 - L1ME3A LINE L1 -310 5860 5681 288 197 30 0 chr6 27382390 27382456 -161897098 - MLT1G1 LTR MaLR 0 595 528 1419 224 35 17 chr6 27382619 27383294 -161896260 - L1ME LINE L1 -414 5752 5073 189 237 102 17 chr6 27383927 27383986 -161895568 + L2 LINE L2 3248 3311 -2 2696 30 0 0 chr6 27384866 27385170 -161894384 - AluY SINE Alu -7 304 1 388 290 84 19 chr6 27385384 27385539 -161894015 + MIR SINE MIR 63 227 -35 189 0 0 0 chr6 27386120 27386141 -161893413 + (A)n Simple_repeat Simple_repeat 1 21 0 1772 152 35 17 chr6 27386291 27386581 -161892973 + AluJb SINE Alu 1 295 -17 361 317 35 35 chr6 27387899 27388044 -161891510 + MIR3 SINE MIR 10 154 -54 223 321 49 0 chr6 27388050 27388131 -161891423 + L2 LINE L2 3229 3313 0 279 114 0 0 chr6 27390581 27390625 -161888929 + (TG)n Simple_repeat Simple_repeat 1 44 0 1588 174 0 25 chr6 27390625 27390901 -161888653 - AluJb SINE Alu -31 281 13 317 254 178 8 chr6 27391313 27391431 -161888123 + MIR SINE MIR 105 242 -20 231 356 54 27 chr6 27391403 27391552 -161888002 + L2 LINE L2 2926 3078 -194 * 1751 154 22 31 chr6 27391623 27391979 -161887575 - MLT1A1 LTR MaLR -12 353 1 382 293 53 23 chr6 27391987 27392120 -161887434 + L2 LINE L2 3136 3272 0 654 243 180 22 chr6 27392529 27392751 -161886803 + MIR SINE MIR 6 262 0 22 0 0 0 chr6 27393169 27393191 -161886363 + AT_rich Low_complexity Low_complexity 1 22 0 1508 201 142 102 chr6 27393812 27394334 -161885220 - MLT1E1 LTR MaLR -2 652 99 2274 143 55 31 chr6 27394334 27394754 -161884800 - Tigger2a DNA MER2_type -2 432 3 1508 201 142 102 chr6 27394754 27394857 -161884697 - MLT1E1 LTR MaLR -555 99 2 2381 66 0 26 chr6 27395160 27395464 -161884090 - AluY SINE Alu -15 296 1 1912 188 53 34 chr6 27395992 27396173 -161883381 + L1MB7 LINE L1 5411 5587 -597 2309 78 14 0 chr6 27396173 27396466 -161883088 + AluY SINE Alu 1 297 -14 1912 188 53 34 chr6 27396466 27396778 -161882776 + L1MB7 LINE L1 5587 5913 -271 2312 105 0 3 chr6 27397857 27398163 -161881391 + AluSc SINE Alu 1 305 -4 413 194 160 74 chr6 27398599 27398774 -161880780 - MER112 DNA MER1_type -6 254 65 1343 163 0 14 chr6 27398902 27399123 -161880431 - AluJo SINE Alu -8 304 87 653 279 25 0 chr6 27399351 27399512 -161880042 + MIR SINE MIR 33 197 -65 2237 105 0 0 chr6 27399565 27399861 -161879693 + AluY SINE Alu 1 296 -15 402 204 133 92 chr6 27400153 27400349 -161879205 - L1ME3 LINE L1 -84 6078 5875 * 1355 253 88 54 chr6 27400348 27401671 -161877883 - L1MEc LINE L1 -2629 3586 2219 53 0 0 0 chr6 27401671 27401724 -161877830 + AT_rich Low_complexity Low_complexity 1 53 0 412 216 125 68 chr6 27401724 27401775 -161877779 - L1MEc LINE L1 -4130 2266 2219 2011 78 37 0 chr6 27401775 27402044 -161877510 - AluY SINE Alu -2 309 31 412 216 125 68 chr6 27402044 27402168 -161877386 - L1MEc LINE L1 -4177 2219 2081 372 267 26 0 chr6 27402201 27402317 -161877237 - MER103 DNA DNA -45 121 3 28 61 0 0 chr6 27403479 27403528 -161876026 + AT_rich Low_complexity Low_complexity 1 49 0 182 299 178 9 chr6 27404186 27404293 -161875261 + L2 LINE L2 3139 3263 -9 497 303 147 9 chr6 27404332 27404550 -161875004 + MIR SINE MIR 1 248 -14 219 217 0 0 chr6 27404555 27404615 -161874939 + (CACCAT)n Simple_repeat Simple_repeat 2 61 0 189 0 0 0 chr6 27404736 27404757 -161874797 + (A)n Simple_repeat Simple_repeat 1 21 0 1861 147 34 0 chr6 27404820 27405113 -161874441 - AluJb SINE Alu -9 303 1 903 147 7 13 chr6 27405966 27406116 -161873438 + FRAM SINE Alu 22 170 -6 23 54 0 0 chr6 27406118 27406155 -161873399 + AT_rich Low_complexity Low_complexity 1 37 0 2110 90 0 63 chr6 27406467 27406790 -161872764 - AluSx SINE Alu 0 304 1 24 0 0 0 chr6 27406837 27406861 -161872693 + AT_rich Low_complexity Low_complexity 1 24 0 212 196 0 22 chr6 27407880 27407926 -161871628 + L2 LINE L2 3265 3309 -4 2115 110 0 0 chr6 27409940 27410251 -161869303 + AluSg SINE Alu 1 311 0 21 0 0 0 chr6 27410489 27410510 -161869044 + AT_rich Low_complexity Low_complexity 1 21 0 1735 180 0 0 chr6 27411471 27411820 -161867734 + AluJb SINE Alu 1 349 0 22 0 0 0 chr6 27412866 27412888 -161866666 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr6 27413716 27413757 -161865797 + AT_rich Low_complexity Low_complexity 1 41 0 913 248 116 25 chr6 27414471 27414789 -161864765 - MLT1I LTR MaLR 0 409 63 198 0 0 0 chr6 27415139 27415161 -161864393 + (TTA)n Simple_repeat Simple_repeat 2 23 0 362 20 0 0 chr6 27415180 27415229 -161864325 - L1PA3 LINE L1 0 6155 6107 356 266 75 0 chr6 27415326 27415420 -161864134 - MIR SINE MIR -3 259 159 24 0 0 0 chr6 27416406 27416430 -161863124 + AT_rich Low_complexity Low_complexity 1 24 0 357 24 0 0 chr6 27416594 27416636 -161862918 + (TG)n Simple_repeat Simple_repeat 2 43 0 2298 95 17 0 chr6 27417255 27417551 -161862003 + AluSx SINE Alu 1 301 -11 295 287 117 11 chr6 27417750 27417844 -161861710 - L2 LINE L2 0 3313 3210 494 264 29 14 chr6 27418311 27418451 -161861103 - MIR SINE MIR -36 226 85 501 286 21 16 chr6 27418451 27418640 -161860914 - LTR16A LTR ERVL 0 450 261 379 276 70 54 chr6 27419693 27419878 -161859676 - MIR3 SINE MIR -18 190 3 333 324 92 23 chr6 27420549 27420722 -161858832 - MIR3 SINE MIR -19 189 5 2194 88 27 10 chr6 27421826 27422122 -161857432 - AluY SINE Alu -10 301 1 389 354 25 6 chr6 27422431 27422592 -161856962 + MIR SINE MIR 73 236 -26 209 313 43 52 chr6 27422750 27422865 -161856689 + L2 LINE L2 3178 3291 -22 198 0 0 0 chr6 27423053 27423075 -161856479 + (A)n Simple_repeat Simple_repeat 1 22 0 180 135 0 0 chr6 27423300 27423337 -161856217 + (A)n Simple_repeat Simple_repeat 1 37 0 2212 83 24 0 chr6 27423342 27423630 -161855924 + AluSg1 SINE Alu 1 295 -14 274 233 14 0 chr6 27424059 27424132 -161855422 - MER116 DNA Mariner -6 74 1 222 320 117 16 chr6 27425853 27425981 -161853573 + MIR SINE MIR 13 153 -109 2054 153 0 7 chr6 27426515 27426816 -161852738 - AluSx SINE Alu -13 299 1 2069 118 17 0 chr6 27427332 27427638 -161851916 + AluSx SINE Alu 3 312 0 25 0 0 0 chr6 27427795 27427820 -161851734 + AT_rich Low_complexity Low_complexity 1 25 0 633 182 136 14 chr6 27428964 27429184 -161850370 - MER5C DNA MER1_type -12 312 66 758 171 0 0 chr6 27429485 27429602 -161849952 + FLAM_A SINE Alu 5 121 -12 281 167 0 0 chr6 27429899 27429947 -161849607 + L2 LINE L2 3261 3308 -5 25 0 0 0 chr6 27430109 27430134 -161849420 + AT_rich Low_complexity Low_complexity 1 25 0 1908 139 59 10 chr6 27430809 27431097 -161848457 - AluSx SINE Alu -10 302 1 400 237 79 9 chr6 27431192 27431306 -161848248 - MIR SINE MIR 0 262 141 2137 98 3 3 chr6 27431984 27432292 -161847262 + AluSx SINE Alu 1 308 0 560 192 29 0 chr6 27432419 27432523 -161847031 - U6 snRNA snRNA 0 107 1 643 167 0 25 chr6 27433313 27433433 -161846121 + FLAM_A SINE Alu 12 128 -14 343 319 159 22 chr6 27434859 27435041 -161844513 - MIR SINE MIR -33 229 23 210 255 20 0 chr6 27435183 27435234 -161844320 + MIR SINE MIR 31 82 -126 407 346 0 15 chr6 27435400 27435533 -161844021 - MIR SINE MIR -112 150 20 188 296 144 16 chr6 27435714 27435839 -161843715 - MIR SINE MIR -120 142 2 247 299 125 14 chr6 27437237 27437381 -161842173 - MIR3 SINE MIR -1 207 48 717 242 34 83 chr6 27437457 27437599 -161841955 - MIR SINE MIR 0 262 137 1611 184 21 7 chr6 27437599 27437882 -161841672 + AluJo SINE Alu 6 292 -20 717 242 34 83 chr6 27437882 27438003 -161841551 - MIR SINE MIR -125 137 12 221 309 0 18 chr6 27439522 27439577 -161839977 - MIR SINE MIR -186 76 23 284 297 14 0 chr6 27439599 27439673 -161839881 + MER81 DNA DNA 40 114 0 1084 151 0 0 chr6 27440462 27440621 -161838933 - FRAM SINE Alu -7 159 1 210 233 0 0 chr6 27440739 27440782 -161838772 + C-rich Low_complexity Low_complexity 6 48 0 203 237 10 41 chr6 27441343 27441440 -161838114 + (CAGAGA)n Simple_repeat Simple_repeat 4 97 0 984 218 43 0 chr6 27441608 27441819 -161837735 + MIR SINE MIR 2 221 -41 345 279 135 0 chr6 27441969 27442073 -161837481 + MIR3 SINE MIR 4 121 -87 409 296 82 0 chr6 27443072 27443231 -161836323 + MIR SINE MIR 77 248 -14 243 306 0 16 chr6 27443391 27443453 -161836101 - MIR SINE MIR -179 83 23 297 197 16 0 chr6 27443629 27443690 -161835864 + MER45 DNA AcHobo 62 123 -55 189 254 18 18 chr6 27444407 27444462 -161835092 + MIR SINE MIR 81 135 -73 654 238 12 41 chr6 27446233 27446405 -161833149 - MIR SINE MIR -73 189 23 6945 20 6 1 chr6 27446513 27447323 -161832231 + L1PA3 LINE L1 5339 6152 -3 310 295 22 14 chr6 27448516 27448655 -161830899 - L1ME3A LINE L1 -9 6161 6022 313 325 84 18 chr6 27449485 27449651 -161829903 + L2 LINE L2 2910 3086 -186 479 117 13 0 chr6 27452187 27452264 -161827290 + MADE1 DNA Mariner 1 78 -2 238 167 167 0 chr6 27453004 27453070 -161826484 - L1ME1 LINE L1 -5 6161 6085 4222 216 47 49 chr6 27453083 27453230 -161826324 - L1ME1 LINE L1 -166 6000 5854 1208 84 6 0 chr6 27453230 27453396 -161826158 - L1PA10 LINE L1 -3 6165 5999 4222 216 47 49 chr6 27453396 27455089 -161824465 - L1ME1 LINE L1 -312 5854 4159 1500 221 63 16 chr6 27455089 27455533 -161824021 + LTR40c LTR ERVL 1 465 0 4222 216 47 49 chr6 27455533 27455914 -161823640 - L1ME1 LINE L1 -2007 4159 3779 2133 110 0 0 chr6 27455914 27456186 -161823368 - AluSc SINE Alu -25 284 13 4222 216 47 49 chr6 27456186 27456486 -161823068 - L1ME1 LINE L1 -2387 3779 3480 1736 184 0 3 chr6 27456486 27456785 -161822769 - AluJb SINE Alu -14 298 1 4222 216 47 49 chr6 27456785 27457070 -161822484 - L1ME1 LINE L1 -2686 3480 3214 995 26 0 0 chr6 27457070 27457187 -161822367 - L1PA3 LINE L1 -1 6154 6038 4222 216 47 49 chr6 27457187 27457302 -161822252 - L1ME1 LINE L1 -2952 3214 3100 279 54 0 0 chr6 27457318 27457355 -161822199 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 36 0 0 chr6 27458159 27458187 -161821367 + AT_rich Low_complexity Low_complexity 1 28 0 332 236 14 0 chr6 27462349 27462421 -161817133 - Charlie8 DNA MER1_type 0 2417 2345 2296 101 0 13 chr6 27462597 27462905 -161816649 + AluSx SINE Alu 1 304 -8 1985 146 0 26 chr6 27462976 27463285 -161816269 + AluJb SINE Alu 1 301 -11 828 301 49 0 chr6 27463331 27463577 -161815977 + MIR SINE MIR 5 262 0 358 322 34 14 chr6 27465837 27466001 -161813553 + MIR SINE MIR 32 192 -61 602 267 48 6 chr6 27466578 27466743 -161812811 + MIR3 SINE MIR 31 202 -6 26 0 0 0 chr6 27468762 27468788 -161810766 + AT_rich Low_complexity Low_complexity 1 26 0 3259 148 89 8 chr6 27469416 27469821 -161809733 - LTR51 LTR ERV1 0 671 197 2465 63 0 3 chr6 27469821 27470121 -161809433 + AluY SINE Alu 5 303 -8 3259 148 89 8 chr6 27470121 27470336 -161809218 - LTR51 LTR ERV1 -474 197 1 372 192 327 0 chr6 27470741 27470845 -161808709 + MER5A DNA MER1_type 51 188 -1 310 352 56 56 chr6 27470860 27471127 -161808427 + L2 LINE L2 2970 3236 -36 1679 169 45 4 chr6 27471160 27471427 -161808127 - AluJb SINE Alu -32 280 3 418 285 117 0 chr6 27471669 27471806 -161807748 - MIR SINE MIR -25 237 85 4661 218 75 22 chr6 27471964 27474304 -161805250 + L1MCb LINE L1 10 2595 -4150 2131 77 39 0 chr6 27474358 27474481 -161805073 + AluY SINE Alu 1 118 -193 414 0 0 0 chr6 27474481 27474527 -161805027 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2131 77 39 0 chr6 27474527 27474688 -161804866 + AluY SINE Alu 118 296 -15 250 146 34 34 chr6 27474792 27474881 -161804673 + CT-rich Low_complexity Low_complexity 3 91 0 1959 170 3 0 chr6 27474882 27475182 -161804372 - AluJo SINE Alu -11 301 1 22 0 0 0 chr6 27477759 27477781 -161801773 + AT_rich Low_complexity Low_complexity 1 22 0 226 297 114 29 chr6 27477812 27477987 -161801567 + HAL1 LINE L1 840 1029 -1478 1107 16 0 0 chr6 27477987 27478115 -161801439 + AluYb8 SINE Alu 191 318 0 304 286 79 79 chr6 27478115 27478559 -161800995 + HAL1 LINE L1 1017 1460 -1047 1413 148 30 25 chr6 27478567 27478804 -161800750 + AluSg1 SINE Alu 1 238 -71 341 317 38 11 chr6 27479281 27479464 -161800090 + HAL1b LINE L1 746 933 -415 304 241 124 22 chr6 27479728 27479865 -161799689 + HAL1b LINE L1 1190 1340 -8 2036 124 0 0 chr6 27480128 27480401 -161799153 - AluSx SINE Alu -39 273 1 973 90 8 0 chr6 27480417 27480551 -161799003 - AluSp/q SINE Alu 0 313 179 949 197 64 0 chr6 27481121 27481309 -161798245 - MER58A DNA MER1_type -1 223 24 260 122 41 0 chr6 27481343 27481392 -161798162 + GA-rich Low_complexity Low_complexity 3 53 0 695 272 29 24 chr6 27481626 27481832 -161797722 + MIR SINE MIR 8 214 -48 410 111 133 22 chr6 27482536 27482626 -161796928 - MLT2E LTR ERVL -19 609 510 21 36 0 0 chr6 27482845 27482873 -161796681 + AT_rich Low_complexity Low_complexity 1 28 0 369 277 25 25 chr6 27482927 27483046 -161796508 - L2 LINE L2 0 3313 3195 809 299 75 57 chr6 27483324 27483802 -161795752 + L3 LINE CR1 880 1366 -211 271 265 73 0 chr6 27485776 27485844 -161793710 + L2 LINE L2 3200 3272 0 247 304 0 14 chr6 27486691 27486760 -161792794 + MIR3 SINE MIR 9 76 -132 417 216 11 23 chr6 27486820 27486908 -161792646 + MER21B LTR ERV1 1 87 -776 2492 241 35 71 chr6 27486929 27487756 -161791798 + MER21B LTR ERV1 16 812 -51 1455 69 0 0 chr6 27487808 27487983 -161791571 + AluSp SINE Alu 136 310 -3 398 277 158 23 chr6 27489465 27489775 -161789779 - L1ME4a LINE L1 -1 6120 5769 2087 119 0 16 chr6 27489986 27490289 -161789265 - AluSx SINE Alu -14 298 1 229 231 108 39 chr6 27490289 27490419 -161789135 - L1P5 LINE L1 -711 5440 5302 22 0 0 0 chr6 27490677 27490699 -161788855 + AT_rich Low_complexity Low_complexity 1 22 0 235 265 188 30 chr6 27491394 27491566 -161787988 + MIR3 SINE MIR 5 203 -5 448 293 53 60 chr6 27492400 27492937 -161786617 + L1MEd LINE L1 1044 1579 -4550 360 0 0 0 chr6 27492937 27492977 -161786577 + (CA)n Simple_repeat Simple_repeat 2 41 0 448 293 53 60 chr6 27492977 27493085 -161786469 + L1MEd LINE L1 1579 1686 -4443 813 195 100 0 chr6 27493242 27493432 -161786122 - MER3 DNA MER1_type 0 209 1 914 292 87 20 chr6 27493651 27494298 -161785256 + L1MEd LINE L1 2350 3039 -3090 679 301 15 0 chr6 27494489 27494688 -161784866 + L1MEd LINE L1 4036 4237 -1892 510 146 0 27 chr6 27494748 27495022 -161784532 + AluJo SINE Alu 1 312 0 483 283 95 61 chr6 27495022 27495098 -161784456 + L1MEd LINE L1 4308 4380 -1749 2002 119 0 27 chr6 27495098 27495392 -161784162 + AluSx SINE Alu 1 286 -26 483 283 95 61 chr6 27495392 27495873 -161783681 + L1MEd LINE L1 4380 4884 -1245 354 296 103 13 chr6 27497119 27497276 -161782278 + MIR SINE MIR 21 191 -71 209 345 0 82 chr6 27497449 27497559 -161781995 - MIR SINE MIR -66 142 42 515 281 62 16 chr6 27498216 27498432 -161781122 - MIR SINE MIR -13 249 22 286 237 23 107 chr6 27498425 27498556 -161780998 + MIR SINE MIR 71 190 -72 * 207 0 0 0 chr6 27500372 27500395 -161779159 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 216 236 14 69 chr6 27501184 27501256 -161778298 - MER5A DNA MER1_type -78 111 44 355 259 71 0 chr6 27503507 27503619 -161775935 + MER5C DNA MER1_type 205 324 0 333 0 0 0 chr6 27503713 27503750 -161775804 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 1860 145 14 0 chr6 27503751 27504027 -161775527 - AluSx SINE Alu -32 280 1 21 0 0 0 chr6 27505235 27505256 -161774298 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 27505810 27505833 -161773721 + AT_rich Low_complexity Low_complexity 1 23 0 621 288 135 5 chr6 27508806 27509028 -161770526 - MIR SINE MIR -10 252 2 30 27 0 0 chr6 27510342 27510379 -161769175 + AT_rich Low_complexity Low_complexity 1 37 0 2337 87 0 3 chr6 27510577 27510877 -161768677 - AluSg SINE Alu -11 299 1 234 284 45 57 chr6 27511964 27512052 -161767502 - L2 LINE L2 0 3313 3227 365 259 4 109 chr6 27512226 27512492 -161767062 - MER112 DNA MER1_type -13 247 10 182 247 35 118 chr6 27513220 27513305 -161766249 - L2 LINE L2 -165 3107 3030 206 204 20 20 chr6 27513312 27513361 -161766193 + L2 LINE L2 3218 3266 -6 186 283 67 42 chr6 27513605 27513725 -161765829 - L2 LINE L2 -897 2417 2295 2257 102 14 0 chr6 27513895 27514189 -161765365 + AluSc SINE Alu 1 298 -11 607 327 203 10 chr6 27514189 27515052 -161764502 + L2 LINE L2 2260 3301 -12 254 285 70 57 chr6 27515337 27515495 -161764059 - MIR SINE MIR -82 180 21 21 36 0 0 chr6 27516361 27516389 -161763165 + AT_rich Low_complexity Low_complexity 1 28 0 2369 39 32 0 chr6 27518311 27518593 -161760961 - AluY SINE Alu -19 292 2 1264 251 85 86 chr6 27519489 27520677 -161758877 + L1MC4 LINE L1 6854 8040 -2 1948 155 0 29 chr6 27520742 27521058 -161758496 + AluJb SINE Alu 1 307 -5 394 227 11 11 chr6 27521326 27521414 -161758140 - L2 LINE L2 -1 3271 3184 189 0 0 0 chr6 27521921 27521942 -161757612 + (A)n Simple_repeat Simple_repeat 1 21 0 24 0 0 0 chr6 27522140 27522164 -161757390 + AT_rich Low_complexity Low_complexity 1 24 0 286 302 43 35 chr6 27522704 27522820 -161756734 + L2 LINE L2 3189 3305 -8 292 257 140 14 chr6 27522983 27523197 -161756357 - L1ME3A LINE L1 -212 5952 5712 403 255 217 25 chr6 27523319 27523476 -161756078 - MIR SINE MIR -28 234 48 22 56 0 0 chr6 27524417 27524453 -161755101 + AT_rich Low_complexity Low_complexity 1 36 0 52 69 0 0 chr6 27527398 27527499 -161752055 + AT_rich Low_complexity Low_complexity 1 101 0 358 329 77 43 chr6 27530336 27530686 -161748868 + L2 LINE L2 1722 2083 -1231 321 278 146 38 chr6 27531288 27531500 -161748054 + MER34 LTR ERV1 13 247 -295 295 172 69 0 chr6 27531472 27531530 -161748024 + MER39 LTR ERV1 409 470 -237 * 255 352 28 0 chr6 27531758 27531866 -161747688 + L2 LINE L2 3199 3309 -4 1794 156 0 41 chr6 27532346 27532666 -161746888 - AluJo SINE Alu 0 312 6 1369 218 57 35 chr6 27532770 27533227 -161746327 - MER39 LTR ERV1 -25 682 6 10145 62 8 68 chr6 27533874 27535349 -161744205 - SVA Other Other 0 1386 1 258 105 0 0 chr6 27535362 27535400 -161744154 + (AGGGGG)n Simple_repeat Simple_repeat 3 40 0 1308 212 76 9 chr6 27536245 27536561 -161742993 - MER2 DNA MER2_type 0 345 9 562 269 138 19 chr6 27536638 27536906 -161742648 - MLT1J2 LTR MaLR -70 380 81 562 351 196 11 chr6 27537377 27537819 -161741735 - L3 LINE CR1 -1 1576 1011 1861 174 3 0 chr6 27537819 27538118 -161741436 - AluJb SINE Alu -12 300 1 562 351 196 11 chr6 27538118 27538227 -161741327 - L3 LINE CR1 -566 1011 923 249 319 22 0 chr6 27538302 27538393 -161741161 - MLT1J LTR MaLR -308 203 111 358 280 37 32 chr6 27538685 27538874 -161740680 - L1M4 LINE L1 -2368 3778 3589 454 256 132 66 chr6 27538958 27539321 -161740233 - L1M4 LINE L1 -2635 3511 3125 565 349 28 5 chr6 27539382 27539597 -161739957 - L3 LINE CR1 -1001 576 357 350 273 30 0 chr6 27540093 27540192 -161739362 + MIR3 SINE MIR 86 187 -21 197 33 33 0 chr6 27540366 27540396 -161739158 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 576 210 70 61 chr6 27541852 27542081 -161737473 - MLT1L LTR MaLR -47 568 338 1079 189 0 6 chr6 27542981 27543161 -161736393 + MER5A DNA MER1_type 11 189 0 247 401 54 14 chr6 27544143 27544290 -161735264 + L2 LINE L2 3119 3271 -1 24 0 0 0 chr6 27544502 27544526 -161735028 + AT_rich Low_complexity Low_complexity 1 24 0 352 227 132 56 chr6 27544725 27544946 -161734608 - HAL1 LINE L1 -10 2497 2294 1014 152 123 5 chr6 27544946 27545157 -161734397 - MER46A DNA MER2_type 0 236 1 352 227 132 56 chr6 27545157 27545173 -161734381 - HAL1 LINE L1 -213 2294 2281 291 28 0 0 chr6 27545173 27545209 -161734345 + (CA)n Simple_repeat Simple_repeat 2 37 0 352 227 132 56 chr6 27545209 27545274 -161734280 - HAL1 LINE L1 -226 2281 2171 1222 190 152 51 chr6 27545276 27545671 -161733883 - MSTB2 LTR MaLR 0 457 23 2581 221 100 32 chr6 27545679 27546553 -161733001 - HAL1 LINE L1 -337 2170 1214 1810 183 0 16 chr6 27546553 27546870 -161732684 - AluJb SINE Alu 0 312 1 2581 221 100 32 chr6 27546870 27547021 -161732533 - HAL1 LINE L1 -1293 1214 1075 1198 265 145 28 chr6 27547078 27547803 -161731751 - HAL1 LINE L1 -1688 819 10 881 268 68 40 chr6 27547938 27548338 -161731216 - LTR38 LTR ERV1 -9 547 137 1010 201 136 13 chr6 27549107 27549416 -161730138 - L1MA4 LINE L1 -8 6292 5946 321 221 116 0 chr6 27551433 27551519 -161728035 - MER96 DNA MER1_type? -19 156 61 24 0 0 0 chr6 27552397 27552421 -161727133 + AT_rich Low_complexity Low_complexity 1 24 0 1714 160 0 41 chr6 27552421 27552714 -161726840 - AluJo SINE Alu -31 281 1 636 192 48 24 chr6 27555076 27555243 -161724311 + MER58A DNA MER1_type 45 215 -9 808 198 11 28 chr6 27555332 27555509 -161724045 + FRAM SINE Alu 1 174 -2 367 207 278 30 chr6 27555717 27555886 -161723668 - MIR SINE MIR -18 244 34 1639 159 97 3 chr6 27556512 27556821 -161722733 + MER44D DNA MER2_type 1 608 -1 1270 137 75 62 chr6 27557228 27557455 -161722099 + MER30 DNA MER1_type 1 230 0 2391 81 0 0 chr6 27557515 27557810 -161721744 + AluY SINE Alu 1 295 -16 207 100 0 0 chr6 27557937 27557967 -161721587 + (CATG)n Simple_repeat Simple_repeat 1 30 0 32 0 0 0 chr6 27560975 27561007 -161718547 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr6 27564590 27564614 -161714940 + AT_rich Low_complexity Low_complexity 1 24 0 1647 163 7 28 chr6 27564616 27564904 -161714650 + AluJo SINE Alu 1 282 -30 252 86 0 0 chr6 27564924 27564959 -161714595 + (CATA)n Simple_repeat Simple_repeat 1 35 0 353 194 0 0 chr6 27566188 27566257 -161713297 + Alu SINE Alu 243 298 -4 252 0 0 0 chr6 27568064 27568092 -161711462 + (T)n Simple_repeat Simple_repeat 1 28 0 927 253 82 31 chr6 27570124 27570515 -161709039 + LTR16B LTR ERVL 54 464 0 1727 128 16 8 chr6 27570552 27570810 -161708744 + AluSx SINE Alu 34 293 -19 1602 243 38 16 chr6 27574267 27574720 -161704834 + Charlie4a DNA MER1_type 42 504 -4 2512 214 24 20 chr6 27575123 27575660 -161703894 - MER74A LTR ERVL 0 558 20 1693 143 11 8 chr6 27575667 27575932 -161703622 + AluSx SINE Alu 34 299 -13 321 297 108 40 chr6 27577288 27577436 -161702118 - L2 LINE L2 -16 3297 3140 1590 252 59 12 chr6 27577540 27577965 -161701589 + LTR16A LTR ERVL 1 445 -5 230 225 0 0 chr6 27578397 27578437 -161701117 - L2 LINE L2 -10 3262 3223 670 268 153 5 chr6 27578875 27579084 -161700470 - MIR SINE MIR -19 243 4 397 275 134 7 chr6 27580302 27580451 -161699103 + MIR SINE MIR 95 262 0 955 216 88 35 chr6 27580488 27580754 -161698800 + MER20B DNA MER1_type 369 652 -131 2725 154 21 39 chr6 27580754 27580917 -161698637 - L1MB8 LINE L1 0 6178 6014 2310 97 3 0 chr6 27580917 27581217 -161698337 + AluSq SINE Alu 1 301 -12 2725 154 21 39 chr6 27581217 27581572 -161697982 - L1MB8 LINE L1 -164 6014 5669 955 216 88 35 chr6 27581572 27581588 -161697966 + MER20B DNA MER1_type 652 666 -117 2083 149 7 0 chr6 27581601 27581902 -161697652 + AluJb SINE Alu 1 303 -9 2288 116 0 0 chr6 27581945 27582255 -161697299 + AluSg SINE Alu 1 310 0 498 194 11 0 chr6 27582265 27582358 -161697196 + MER20B DNA MER1_type 689 782 -1 436 349 92 5 chr6 27582369 27582587 -161696967 + MIR SINE MIR 20 256 -6 24 0 0 0 chr6 27583419 27583443 -161696111 + AT_rich Low_complexity Low_complexity 1 24 0 351 250 0 12 chr6 27583794 27583878 -161695676 + MER58B DNA MER1_type 257 339 -2 21 71 0 0 chr6 27585516 27585558 -161693996 + AT_rich Low_complexity Low_complexity 1 42 0 486 243 17 14 chr6 27585669 27585801 -161693753 + MLT1G1 LTR MaLR 68 237 -312 2157 139 81 60 chr6 27585828 27586295 -161693259 - MER31A LTR ERV1 -8 477 1 681 244 226 11 chr6 27586295 27586576 -161692978 + MLT1G1 LTR MaLR 251 593 -2 2213 94 3 26 chr6 27587402 27587744 -161691810 - AluSx SINE Alu 0 312 1 821 251 39 21 chr6 27587773 27588052 -161691502 - L1ME1 LINE L1 -5 6161 5878 266 287 116 61 chr6 27588693 27588857 -161690697 + L3 LINE CR1 782 954 -623 351 288 181 33 chr6 27589194 27589465 -161690089 + L3 LINE CR1 1204 1514 -63 1777 204 38 46 chr6 27589661 27590054 -161689500 - MLT1B LTR MaLR 0 390 1 180 196 109 0 chr6 27591556 27591602 -161687952 + MIR SINE MIR 82 132 -76 257 277 43 76 chr6 27591614 27591798 -161687756 + MER5B DNA MER1_type 1 178 0 517 151 29 7 chr6 27592313 27592452 -161687102 + GA-rich Low_complexity Low_complexity 3 144 0 3484 96 16 2 chr6 27592622 27592664 -161686890 - MLT2A2 LTR ERVL 0 453 413 369 0 0 0 chr6 27592664 27592705 -161686849 + (CA)n Simple_repeat Simple_repeat 2 42 0 3484 96 16 2 chr6 27592705 27593109 -161686445 - MLT2A2 LTR ERVL -40 413 1 1359 285 92 55 chr6 27593393 27595067 -161684487 + L1ME4a LINE L1 410 2195 -4115 1239 259 82 26 chr6 27595095 27595818 -161683736 + L1ME4a LINE L1 2253 3015 -3114 646 282 156 8 chr6 27596516 27596874 -161682680 + L1ME4a LINE L1 5477 5887 -217 244 235 15 81 chr6 27596884 27597020 -161682534 + L1ME4a LINE L1 5940 6066 -38 254 319 57 19 chr6 27597706 27597813 -161681741 + MER5B DNA MER1_type 1 131 -58 473 279 97 32 chr6 27598330 27598671 -161680883 - L1ME4a LINE L1 -24 6097 5735 564 295 75 10 chr6 27598999 27599199 -161680355 - MIR SINE MIR -2 260 48 926 158 17 0 chr6 27599212 27599389 -161680165 - L1MC3 LINE L1 -146 7639 7460 526 288 45 30 chr6 27599443 27599641 -161679913 - MIR SINE MIR -52 210 10 292 269 228 12 chr6 27599837 27600008 -161679546 - L3 LINE CR1 -160 1417 1210 22 56 0 0 chr6 27601301 27601337 -161678217 + AT_rich Low_complexity Low_complexity 1 36 0 247 232 34 57 chr6 27602756 27602933 -161676621 + (TCTCTG)n Simple_repeat Simple_repeat 6 178 0 * 294 275 9 59 chr6 27602857 27603108 -161676446 + CT-rich Low_complexity Low_complexity 1 238 0 194 353 90 8 chr6 27603968 27604090 -161675464 - MER5A DNA MER1_type -9 180 49 238 236 85 57 chr6 27605628 27605734 -161673820 + MIR SINE MIR 36 144 -64 289 174 29 0 chr6 27605984 27606053 -161673501 + (TA)n Simple_repeat Simple_repeat 2 72 0 2326 101 0 0 chr6 27606334 27606665 -161672889 - AluY SINE Alu 0 335 5 204 139 70 23 chr6 27607791 27607834 -161671720 + MIR SINE MIR 106 150 -58 484 248 17 0 chr6 27608075 27608192 -161671362 - MER70A LTR ERVL -239 233 115 210 354 0 10 chr6 27608438 27608537 -161671017 + MIR SINE MIR 159 256 -6 320 320 52 0 chr6 27608679 27608776 -161670778 + L2 LINE L2 3144 3245 -27 1045 194 107 0 chr6 27608779 27608995 -161670559 - MER70A LTR ERVL -233 239 1 305 181 60 72 chr6 27611201 27611284 -161668270 + L2 LINE L2 3232 3313 0 270 200 18 0 chr6 27611717 27611772 -161667782 + MIR SINE MIR 82 137 -125 587 289 20 40 chr6 27611788 27611989 -161667565 - MIR SINE MIR -12 250 54 335 336 30 0 chr6 27612029 27612160 -161667394 + MIR SINE MIR 128 262 0 605 319 61 13 chr6 27612662 27612891 -161666663 + MIR SINE MIR 2 241 -21 279 212 94 12 chr6 27612911 27612996 -161666558 + MIR SINE MIR 171 262 0 291 256 23 53 chr6 27613612 27613745 -161665809 - MER102a DNA MER1_type -26 304 176 316 229 70 96 chr6 27614257 27614347 -161665207 + L1ME4a LINE L1 5532 5623 -498 243 0 0 0 chr6 27614347 27614374 -161665180 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 316 229 70 96 chr6 27614374 27614388 -161665166 + L1ME4a LINE L1 5623 5636 -485 1902 128 3 51 chr6 27614388 27614701 -161664853 + AluSq SINE Alu 1 298 -15 316 229 70 96 chr6 27614701 27614866 -161664688 + L1ME4a LINE L1 5636 5795 -326 322 203 38 13 chr6 27614866 27614945 -161664609 - L2 LINE L2 -2 3311 3231 461 199 195 21 chr6 27614952 27615193 -161664361 + L1ME4a LINE L1 5794 6076 -45 26 0 0 0 chr6 27615207 27615233 -161664321 + AT_rich Low_complexity Low_complexity 1 26 0 334 220 199 7 chr6 27615351 27615492 -161664062 + L1ME4a LINE L1 5954 6121 0 368 260 96 7 chr6 27615944 27616128 -161663426 - L1MEd LINE L1 -4591 1972 1622 21 0 0 0 chr6 27616228 27616249 -161663305 + AT_rich Low_complexity Low_complexity 1 21 0 414 295 72 58 chr6 27616882 27617160 -161662394 - L1MEd LINE L1 -5750 622 336 2581 37 0 0 chr6 27617160 27617457 -161662097 + AluY SINE Alu 1 297 -14 414 295 72 58 chr6 27617457 27617541 -161662013 - L1MEd LINE L1 -6036 336 255 180 267 188 10 chr6 27618420 27618521 -161661033 + L2 LINE L2 3195 3313 0 455 301 110 32 chr6 27618793 27619012 -161660542 + MIR SINE MIR 7 242 -20 193 318 40 63 chr6 27620377 27620503 -161659051 + L2 LINE L2 2966 3088 -184 967 252 198 49 chr6 27620547 27621253 -161658301 - L2 LINE L2 -1 3312 2486 231 336 112 0 chr6 27621270 27621377 -161658177 + L2 LINE L2 3122 3240 -32 2535 138 21 19 chr6 27622097 27622524 -161657030 - MSTA LTR MaLR 0 428 1 304 226 19 75 chr6 27623362 27623468 -161656086 + LTR4 LTR ERV1 18 117 -479 473 259 39 29 chr6 27623753 27623958 -161655596 + LTR4 LTR ERV1 390 596 0 1891 260 111 58 chr6 27624118 27625227 -161654327 + L2 LINE L2 2132 3312 -1 21 0 0 0 chr6 27625895 27625916 -161653638 + AT_rich Low_complexity Low_complexity 1 21 0 497 225 45 9 chr6 27626719 27626830 -161652724 - L2 LINE L2 -8 3305 3191 250 212 45 0 chr6 27626860 27626926 -161652628 + MIR SINE MIR 84 152 -110 195 268 80 36 chr6 27628325 27628437 -161651117 + MIR SINE MIR 90 206 -56 594 237 90 12 chr6 27629782 27630105 -161649449 + MLT1I LTR MaLR 1 392 -17 1658 249 79 17 chr6 27631838 27632433 -161647121 - MER20B DNA MER1_type -86 697 66 480 188 0 62 chr6 27632643 27632755 -161646799 + MER8 DNA MER2_type 1 105 -134 1810 174 79 55 chr6 27632810 27632843 -161646711 + MLT1D LTR MaLR 1 32 -473 1723 173 48 0 chr6 27632843 27632963 -161646591 + AluSx SINE Alu 1 114 -198 188 35 35 0 chr6 27632963 27632992 -161646562 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 1723 173 48 0 chr6 27632992 27633160 -161646394 + AluSx SINE Alu 114 303 -9 1810 174 79 55 chr6 27633160 27633619 -161645935 + MLT1D LTR MaLR 32 505 0 23 33 0 0 chr6 27633973 27634003 -161645551 + AT_rich Low_complexity Low_complexity 1 30 0 4642 194 45 15 chr6 27634057 27635990 -161643564 - L1MB7 LINE L1 -19 6663 4673 883 225 182 25 chr6 27635974 27636606 -161642948 - L1MB7 LINE L1 -3948 2698 1968 * 1136 153 0 5 chr6 27636609 27636799 -161642755 - L1MB7 LINE L1 -5581 961 773 759 173 71 56 chr6 27636792 27636850 -161642704 - L1MB7 LINE L1 -6330 212 156 * 2369 57 0 3 chr6 27636850 27637146 -161642408 + AluY SINE Alu 1 295 -16 759 173 71 56 chr6 27637146 27637284 -161642270 - L1MB7 LINE L1 -6386 156 13 899 242 36 52 chr6 27638478 27638730 -161640824 + MIR SINE MIR 2 249 -13 24 0 0 0 chr6 27638969 27638993 -161640561 + AT_rich Low_complexity Low_complexity 1 24 0 559 261 7 0 chr6 27641392 27641534 -161638020 - MER58A DNA MER1_type 0 143 1 247 330 92 9 chr6 27641766 27641875 -161637679 - L2 LINE L2 -5 3267 3150 575 242 63 16 chr6 27642440 27642630 -161636924 - MER21B LTR ERV1 -151 712 514 1557 223 41 27 chr6 27643276 27643518 -161636036 + L1M4 LINE L1 3902 4139 -2007 1489 221 63 16 chr6 27643518 27643962 -161635592 - LTR40c LTR ERVL 0 465 1 1557 223 41 27 chr6 27643962 27644275 -161635279 + L1M4 LINE L1 4139 4465 -1681 840 275 95 85 chr6 27644690 27645606 -161633948 - L2 LINE L2 -817 2497 1573 229 330 188 0 chr6 27645618 27645730 -161633824 + L2 LINE L2 3133 3265 -7 988 90 8 0 chr6 27646005 27646139 -161633415 + AluSp/q SINE Alu 179 313 0 2052 124 0 0 chr6 27646155 27646428 -161633126 + AluSx SINE Alu 1 273 -39 185 308 90 26 chr6 27647756 27647912 -161631642 + L2 LINE L2 2213 2378 -936 21 0 0 0 chr6 27649143 27649164 -161630390 + AT_rich Low_complexity Low_complexity 1 21 0 505 117 0 0 chr6 27649220 27649297 -161630257 - U13 snRNA snRNA -27 77 1 274 233 14 0 chr6 27650448 27650521 -161629033 + MER116 DNA Mariner 1 74 -6 2129 120 14 0 chr6 27650950 27651241 -161628313 - AluSx SINE Alu -15 297 3 2337 87 0 3 chr6 27652023 27652323 -161627231 - AluSg SINE Alu -11 299 1 228 239 0 0 chr6 27653503 27653549 -161626005 + GA-rich Low_complexity Low_complexity 2 47 0 343 246 0 0 chr6 27653916 27653977 -161625577 + G-rich Low_complexity Low_complexity 1 61 0 2635 127 87 30 chr6 27654280 27654577 -161624977 - Tigger1 DNA MER2_type 0 2418 2079 2325 91 3 0 chr6 27654577 27654873 -161624681 - AluSp SINE Alu -14 299 3 2635 127 87 30 chr6 27654873 27655079 -161624475 - Tigger1 DNA MER2_type -339 2079 1886 2050 79 104 7 chr6 27655148 27655590 -161623964 - L1PA6 LINE L1 -3 6151 5667 462 113 82 10 chr6 27655885 27655982 -161623572 - AluY SINE Alu -207 104 1 713 186 90 6 chr6 27655985 27656162 -161623392 - L1M4 LINE L1 -582 5602 5411 2123 138 3 0 chr6 27656690 27656988 -161622566 + AluSx SINE Alu 1 299 -13 223 139 93 0 chr6 27658191 27658234 -161621320 - L2 LINE L2 0 3313 3267 785 285 40 20 chr6 27708290 27708644 -161570910 + L1MC4a LINE L1 5572 5932 -1876 270 294 7 22 chr6 27708651 27708787 -161570767 + L1MC4a LINE L1 6131 6264 -1544 318 325 70 22 chr6 27708857 27709128 -161570426 + L1M4 LINE L1 3547 3830 -2316 182 265 75 80 chr6 27709381 27709581 -161569973 - L2 LINE L2 -223 3049 2851 486 185 0 93 chr6 27709867 27709975 -161569579 - MER63C DNA MER1_type 0 931 834 188 83 0 28 chr6 27709975 27710011 -161569543 + (TTAAA)n Simple_repeat Simple_repeat 3 37 0 2130 206 43 18 chr6 27710030 27710521 -161569033 - MER63C DNA MER1_type -189 741 239 280 238 16 0 chr6 27710487 27710550 -161569004 + MER63 DNA MER1_type 463 526 -534 * 280 257 43 0 chr6 27710802 27710872 -161568682 - MER63 DNA MER1_type -987 74 2 630 271 6 34 chr6 27712170 27712347 -161567207 + MLT1F LTR MaLR 1 172 -370 1615 178 76 54 chr6 27712996 27713350 -161566204 + MLT1A1 LTR MaLR 2 363 -2 600 252 128 4 chr6 27713610 27713836 -161565718 + L1MEd LINE L1 557 810 -5309 1199 198 22 101 chr6 27713928 27714373 -161565181 - LTR5 LTR ERVK 0 969 560 1331 218 19 3 chr6 27714498 27714810 -161564744 - LTR5 LTR ERVK -652 317 1 302 252 153 0 chr6 27714913 27715024 -161564530 - MLT1J LTR MaLR -52 459 332 753 292 102 22 chr6 27715077 27715392 -161564162 + MLT1I LTR MaLR 70 409 0 254 95 24 0 chr6 27715965 27716007 -161563547 + (GA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr6 27716135 27716156 -161563398 + AT_rich Low_complexity Low_complexity 1 21 0 1252 254 47 27 chr6 27716738 27717076 -161562478 + MLT1I LTR MaLR 63 407 -2 2810 145 87 0 chr6 27717440 27717923 -161561631 - Tigger3(Golem) DNA MER2_type -5 3024 2500 649 191 0 0 chr6 27718023 27718149 -161561405 + AluY SINE Alu 184 309 -2 418 221 90 0 chr6 27718159 27718281 -161561273 - Tigger3(Golem) DNA MER2_type -609 2420 2288 1390 307 189 21 chr6 27718360 27719407 -161560147 - L2 LINE L2 -338 2976 1754 411 68 0 0 chr6 27720194 27720253 -161559301 + (CA)n Simple_repeat Simple_repeat 2 60 0 917 294 182 21 chr6 27720833 27721542 -161558012 + L2 LINE L2 2223 3038 -275 5456 194 6 63 chr6 27723656 27724786 -161554768 - L1MEc LINE L1 -2691 3438 2356 416 92 0 0 chr6 27724786 27724851 -161554703 + Alu SINE Alu 246 310 -1 5456 194 6 63 chr6 27724851 27725011 -161554543 - L1MEc LINE L1 -3773 2356 2188 729 259 86 49 chr6 27725638 27726124 -161553430 - L1MEc LINE L1 -4868 1251 748 334 370 22 0 chr6 27726264 27726399 -161553155 - L1MEc LINE L1 -5344 775 638 348 209 133 0 chr6 27726802 27726907 -161552647 - L1MEc LINE L1 -5976 143 25 313 378 14 62 chr6 27726977 27727186 -161552368 - MIR3 SINE MIR -6 202 4 364 247 12 12 chr6 27728310 27728391 -161551163 + MIR SINE MIR 2 82 -180 325 216 8 72 chr6 27729208 27729333 -161550221 - LTR33A LTR ERVL 0 523 407 644 298 19 19 chr6 27730583 27730791 -161548763 - MIR SINE MIR -4 258 51 76 78 0 0 chr6 27731394 27731561 -161547993 + AT_rich Low_complexity Low_complexity 1 167 0 3043 156 26 94 chr6 27731704 27732404 -161547150 + L1MC3 LINE L1 7065 7716 -69 481 269 53 41 chr6 27732762 27732933 -161546621 - MIR SINE MIR -57 205 33 281 319 0 50 chr6 27733913 27734032 -161545522 + L2 LINE L2 2393 2505 -809 236 234 0 0 chr6 27734640 27734687 -161544867 - L2 LINE L2 0 3313 3267 328 154 0 0 chr6 27734711 27734763 -161544791 + Alu SINE Alu 1 52 -250 1288 168 0 0 chr6 27734763 27734965 -161544589 + AluSg/x SINE Alu 109 310 0 652 298 92 5 chr6 27736008 27736226 -161543328 - MIR SINE MIR -17 245 9 2212 132 0 0 chr6 27736669 27736972 -161542582 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr6 27737005 27737034 -161542520 + AT_rich Low_complexity Low_complexity 1 29 0 279 83 0 0 chr6 27737048 27737084 -161542470 - MADE1 DNA Mariner -44 36 1 284 324 93 29 chr6 27737689 27737828 -161541726 + L2 LINE L2 3121 3268 -4 324 287 167 36 chr6 27738237 27738512 -161541042 - MLT1I LTR MaLR -42 367 57 376 171 66 0 chr6 27739563 27739639 -161539915 - L1ME3A LINE L1 -8 6162 6082 264 282 117 55 chr6 27740134 27740297 -161539257 + MIR3 SINE MIR 8 180 -28 1973 143 0 7 chr6 27740425 27740725 -161538829 + AluSq SINE Alu 1 298 -15 1900 164 27 0 chr6 27740806 27741105 -161538449 - AluJb SINE Alu -5 307 1 269 257 56 73 chr6 27741117 27741296 -161538258 - L1MC4a LINE L1 -1810 5998 5823 1152 262 92 46 chr6 27741303 27741761 -161537793 - L1MC4a LINE L1 -2064 5744 5266 399 21 0 0 chr6 27742942 27742990 -161536564 + (CAA)n Simple_repeat Simple_repeat 2 49 0 684 331 100 46 chr6 27743907 27744366 -161535188 - L2 LINE L2 0 3313 2830 273 329 58 36 chr6 27745770 27745907 -161533647 - L2 LINE L2 -218 3054 2915 356 338 98 11 chr6 27746316 27746591 -161532963 - L2 LINE L2 -982 2332 2034 431 125 25 0 chr6 27746593 27746673 -161532881 + GA-rich Low_complexity Low_complexity 4 85 0 1879 190 84 20 chr6 27746856 27747262 -161532292 - MSTB1 LTR MaLR 0 432 1 208 139 0 0 chr6 27748948 27748984 -161530570 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2522 150 20 12 chr6 27749660 27750066 -161529488 - MSTB LTR MaLR -16 410 2 3948 24 0 2 chr6 27751129 27751580 -161527974 + L1PA4 LINE L1 5525 5974 -181 1710 169 13 13 chr6 27751883 27752184 -161527370 - AluJb SINE Alu -11 301 1 222 37 0 0 chr6 27752366 27752393 -161527161 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 2021 89 44 0 chr6 27752414 27752685 -161526869 - AluSp SINE Alu -30 283 1 335 272 72 16 chr6 27752972 27753097 -161526457 - LTR24B LTR ERV1 -45 531 400 2614 115 10 30 chr6 27753102 27753501 -161526053 + LTR22A LTR ERVK 68 458 0 9306 139 3 6 chr6 27753558 27754946 -161524608 + HERVK22 LTR ERVK 81 1464 -5373 4921 121 13 3 chr6 27754956 27755656 -161523898 + HERVK22 LTR ERVK 4587 5293 -1544 1650 145 4 0 chr6 27755650 27755892 -161523662 + HERVK22 LTR ERVK 6595 6837 0 * 3075 135 13 2 chr6 27755892 27756345 -161523209 + LTR22A LTR ERVK 1 458 0 2130 84 40 7 chr6 27756397 27756696 -161522858 + AluSq SINE Alu 1 309 -4 497 253 108 82 chr6 27757543 27757958 -161521596 - MER101 LTR ERV1 -36 438 13 1151 124 10 57 chr6 27759939 27760148 -161519406 + AluSx SINE Alu 15 213 -99 343 231 50 33 chr6 27762287 27762370 -161517184 + MER3 DNA MER1_type 46 133 -29 1913 130 0 63 chr6 27762370 27762686 -161516868 - AluSx SINE Alu -16 296 1 343 231 50 33 chr6 27762686 27762723 -161516831 + MER3 DNA MER1_type 133 168 -41 966 198 90 12 chr6 27762726 27763069 -161516485 + MER3 DNA MER1_type 2234 2603 0 2085 119 0 13 chr6 27763069 27763381 -161516173 - AluSx SINE Alu -4 308 1 488 234 48 35 chr6 27764146 27764291 -161515263 - MIR SINE MIR -14 248 102 2007 113 0 38 chr6 27765048 27765340 -161514214 + AluSx SINE Alu 11 291 -21 910 112 0 8 chr6 27765342 27765467 -161514087 + AluSc SINE Alu 104 227 -82 24 0 0 0 chr6 27766280 27766304 -161513250 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 27766346 27766373 -161513181 + AT_rich Low_complexity Low_complexity 1 27 0 1805 146 15 0 chr6 27766636 27766903 -161512651 - AluSx SINE Alu -39 273 3 1206 183 55 116 chr6 27767223 27767638 -161511916 - MLT1B LTR MaLR 0 390 1 1948 188 38 40 chr6 27767638 27767701 -161511853 - MLT1B-int LTR MaLR 0 1735 1673 2312 84 0 3 chr6 27767701 27767998 -161511556 + AluY SINE Alu 1 296 -15 1948 188 38 40 chr6 27767998 27768355 -161511199 - MLT1B-int LTR MaLR -62 1673 1316 1450 140 16 102 chr6 27768579 27768893 -161510661 + AluY SINE Alu 11 297 -14 1814 228 16 53 chr6 27769022 27769173 -161510381 - MLT1B-int LTR MaLR -486 885 730 1770 171 3 10 chr6 27769173 27769482 -161510072 + AluJb SINE Alu 1 307 -5 1814 228 16 53 chr6 27769482 27769877 -161509677 - MLT1B-int LTR MaLR -641 730 268 1061 140 6 0 chr6 27769910 27770067 -161509487 - AluSg/x SINE Alu -35 275 118 1122 208 41 0 chr6 27770172 27770465 -161509089 + L1MB7 LINE L1 4188 4492 -1654 3098 205 31 16 chr6 27770500 27771517 -161508037 + L1MB7 LINE L1 4963 5986 -198 306 0 0 0 chr6 27772253 27772287 -161507267 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 780 142 8 30 chr6 27772417 27772551 -161507003 + AluJo SINE Alu 1 131 -171 3158 145 41 46 chr6 27772657 27773263 -161506291 + LTR26 LTR ERV1 1 603 0 2970 227 237 19 chr6 27774027 27774180 -161505374 + L1MC4 LINE L1 6459 6577 -1465 276 111 0 0 chr6 27774180 27774225 -161505329 + (TAGG)n Simple_repeat Simple_repeat 2 46 0 2970 227 237 19 chr6 27774225 27775256 -161504298 + L1MC4 LINE L1 6577 7901 -141 341 305 80 31 chr6 27775737 27775963 -161503591 + L1M4 LINE L1 3792 4028 -2118 1593 156 11 94 chr6 27777206 27777558 -161501996 + MER101 LTR ERV1 2 324 -150 626 107 0 0 chr6 27777564 27777648 -161501906 + AluS SINE Alu 8 91 -221 540 152 15 1 chr6 27777757 27777855 -161501699 + MER101 LTR ERV1 281 483 -87 879 342 77 24 chr6 27777866 27778448 -161501106 + L2 LINE L2 2364 2976 -338 266 309 115 23 chr6 27778651 27778868 -161500686 + L2 LINE L2 3033 3269 -44 804 199 51 0 chr6 27778917 27779093 -161500461 + Charlie4 DNA MER1_type 32 216 -1745 * 2002 200 60 14 chr6 27779085 27779531 -161500023 + MER101 LTR ERV1 6 472 -2 292 204 126 0 chr6 27779534 27779637 -161499917 + Charlie4 DNA MER1_type 1754 1869 -92 982 184 0 13 chr6 27781668 27781826 -161497728 + AluJo SINE Alu 134 289 -23 22 0 0 0 chr6 27781898 27781920 -161497634 + AT_rich Low_complexity Low_complexity 1 22 0 341 292 28 0 chr6 27781920 27782064 -161497490 - L1M4 LINE L1 -1847 4299 4152 406 341 154 6 chr6 27782118 27782346 -161497208 + L2 LINE L2 1447 1640 -1674 194 0 39 0 chr6 27782346 27782372 -161497182 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 406 341 154 6 chr6 27782372 27782480 -161497074 + L2 LINE L2 1640 1833 -1481 984 239 59 63 chr6 27782771 27782822 -161496732 - L1MC5 LINE L1 -431 7530 7480 1821 105 20 0 chr6 27782822 27783069 -161496485 - AluSg SINE Alu -18 292 41 984 239 59 63 chr6 27783069 27783494 -161496060 - L1MC5 LINE L1 -481 7480 7056 382 279 184 35 chr6 27783498 27783922 -161495632 + L2 LINE L2 1825 2409 -905 496 321 48 36 chr6 27785346 27785704 -161493850 - L1MEd LINE L1 -5757 362 1 972 206 79 9 chr6 27787279 27787507 -161492047 + ORSL DNA AcHobo 11 254 -21 602 242 55 97 chr6 27787704 27788106 -161491448 - L1MDa LINE L1 -4506 2034 1651 2450 60 30 0 chr6 27788147 27788447 -161491107 - AluY SINE Alu -2 309 1 258 287 158 43 chr6 27788794 27788958 -161490596 + MIR SINE MIR 20 202 -60 595 317 66 21 chr6 27788989 27789232 -161490322 - MIR SINE MIR -6 256 3 8993 201 35 20 chr6 27789373 27791097 -161488457 + L1MA8 LINE L1 2756 4951 -2614 189 0 0 0 chr6 27791097 27791118 -161488436 + (CAA)n Simple_repeat Simple_repeat 1 21 0 8993 201 35 20 chr6 27791118 27791795 -161487759 + L1MA8 LINE L1 4951 5616 -1949 4308 138 10 15 chr6 27791772 27792671 -161486883 + L1PB3 LINE L1 6443 7336 -237 * 5295 102 5 12 chr6 27792680 27793456 -161486098 - L1PB1 LINE L1 -5 6146 5376 1488 144 8 16 chr6 27793458 27793714 -161485840 + L1PB3 LINE L1 7318 7571 -2 5060 150 26 8 chr6 27793731 27794605 -161484949 + L1PB4 LINE L1 5259 6148 -8 5958 137 35 7 chr6 27794710 27796589 -161482965 + L1MA8 LINE L1 5783 7708 -2 198 0 0 0 chr6 27798771 27798793 -161480761 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3079 85 2 21 chr6 27798798 27799234 -161480320 - L1PA13 LINE L1 -20 6143 5716 674 199 35 14 chr6 27799421 27799562 -161479992 - L2 LINE L2 -3 3310 3167 322 252 79 47 chr6 27799561 27799688 -161479866 - MIR SINE MIR -65 197 67 * 800 196 27 45 chr6 27799753 27799912 -161479642 + L1MCa LINE L1 1042 1202 -5224 1920 124 0 11 chr6 27799912 27800194 -161479360 + AluSx SINE Alu 1 279 -33 399 21 0 0 chr6 27800194 27800242 -161479312 + (CA)n Simple_repeat Simple_repeat 1 48 0 800 196 27 45 chr6 27800242 27800305 -161479249 + L1MCa LINE L1 1200 1261 -5165 402 162 0 0 chr6 27800345 27800467 -161479087 + GA-rich Low_complexity Low_complexity 1 122 0 487 188 75 0 chr6 27800467 27800600 -161478954 + L1MCa LINE L1 1267 1409 -5017 263 213 33 0 chr6 27800617 27800678 -161478876 + LTR36 LTR ERV1 1 63 -548 1261 204 75 132 chr6 27800704 27801302 -161478252 + LTR36 LTR ERV1 48 611 0 246 153 153 0 chr6 27801302 27801374 -161478180 + L1MCa LINE L1 1432 1514 -4912 261 355 92 13 chr6 27801649 27801801 -161477753 - MER115 DNA AcHobo -524 169 6 206 336 82 9 chr6 27801809 27801919 -161477635 - L2 LINE L2 -1407 1907 1790 187 256 56 44 chr6 27801944 27802034 -161477520 - L2 LINE L2 -1922 1392 1302 2376 90 0 3 chr6 27802059 27802359 -161477195 - AluSq SINE Alu -14 299 1 408 250 137 68 chr6 27802872 27803120 -161476434 - L3 LINE CR1 -174 1403 1139 790 333 61 37 chr6 27803221 27803681 -161475873 + LTR33 LTR ERVL 1 471 -50 266 269 103 0 chr6 27803687 27803765 -161475789 + MIR SINE MIR 78 163 -99 262 257 124 0 chr6 27803887 27804000 -161475554 + MER46C DNA MER2_type 167 293 -45 185 398 32 0 chr6 27804049 27804142 -161475412 + MIR SINE MIR 158 253 -9 2481 37 3 59 chr6 27805809 27806131 -161473423 + AluY SINE Alu 1 304 -7 200 35 35 0 chr6 27806688 27806717 -161472837 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3039 217 70 28 chr6 27808079 27809013 -161470541 - L1ME1 LINE L1 -76 6370 5400 518 191 88 41 chr6 27809022 27809169 -161470385 - L1M4 LINE L1 -1286 5140 4987 871 229 66 4 chr6 27809169 27809427 -161470127 + L1M4 LINE L1 5131 5404 -1022 406 200 10 0 chr6 27809424 27809524 -161470030 + L1ME2 LINE L1 1813 1913 -4513 * 31 44 0 0 chr6 27809601 27809646 -161469908 + AT_rich Low_complexity Low_complexity 1 45 0 873 254 80 48 chr6 27809662 27810040 -161469514 + L1ME2 LINE L1 2044 2392 -4034 * 1358 207 20 23 chr6 27810033 27810482 -161469072 - L1ME1 LINE L1 -3614 2812 2367 2253 214 56 19 chr6 27810592 27811274 -161468280 - L1ME1 LINE L1 -4764 1662 956 21 0 0 0 chr6 27811939 27811960 -161467594 + AT_rich Low_complexity Low_complexity 1 21 0 396 219 110 32 chr6 27812298 27812453 -161467101 + L1ME2 LINE L1 5028 5194 -1232 748 224 103 29 chr6 27812462 27812743 -161466811 + L1ME2 LINE L1 5931 6232 -212 1316 163 36 42 chr6 27812743 27813049 -161466505 - MLT1E3 LTR MaLR -320 304 1 893 228 43 120 chr6 27813049 27813492 -161466062 - MLT1E3-int LTR MaLR 0 1371 963 262 170 0 0 chr6 27813537 27813584 -161465970 - MLT1E3 LTR MaLR -577 47 1 522 295 18 78 chr6 27813585 27813866 -161465688 - L1M4 LINE L1 -2172 3974 3711 394 268 28 28 chr6 27813964 27814143 -161465411 + L1MC4a LINE L1 5704 5882 -1926 300 333 86 74 chr6 27814207 27814640 -161464914 + L1MEd LINE L1 66 503 -5616 375 273 252 0 chr6 27814850 27815088 -161464466 + L1MEd LINE L1 2860 3157 -2972 719 259 109 4 chr6 27816044 27816291 -161463263 + L1MCa LINE L1 1693 1965 -4461 278 207 24 24 chr6 27816660 27816742 -161462812 + (CATA)n Simple_repeat Simple_repeat 2 83 0 395 148 50 10 chr6 27817637 27817738 -161461816 + CT-rich Low_complexity Low_complexity 2 106 0 1425 205 52 0 chr6 27817934 27818202 -161461352 - AluJo SINE Alu -30 282 1 209 256 23 0 chr6 27818345 27818388 -161461166 + L2 LINE L2 3210 3253 -19 379 267 38 80 chr6 27818814 27819241 -161460313 - L1MC5 LINE L1 -44 7917 7509 1114 224 88 98 chr6 27819629 27819667 -161459887 - L1MC5 LINE L1 -753 7208 7171 2546 56 0 0 chr6 27819667 27819969 -161459585 + AluY SINE Alu 1 302 -9 1114 224 88 98 chr6 27819969 27820533 -161459021 - L1MC5 LINE L1 -790 7171 6612 381 321 24 45 chr6 27820740 27821030 -161458524 - LTR16C LTR ERVL -15 476 193 1885 147 167 37 chr6 27821030 27821067 -161458487 - LTR46 LTR ERV1 0 460 429 276 30 0 0 chr6 27821067 27821100 -161458454 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 279 0 0 0 chr6 27821099 27821130 -161458424 + (GA)n Simple_repeat Simple_repeat 2 32 0 1885 147 167 37 chr6 27821100 27821499 -161458055 - LTR46 LTR ERV1 -31 429 1 2071 115 0 3 chr6 27821499 27821812 -161457742 - LTR46-int LTR ERV1 0 6985 6674 393 290 8 0 chr6 27821914 27822038 -161457516 - HERV17 LTR ERV1 -446 8180 8056 9218 123 7 9 chr6 27822138 27823647 -161455907 - HERV17 LTR ERV1 -309 6676 5171 1026 331 60 10 chr6 27823702 27824383 -161455171 - HERV16 LTR ERVL -2025 3002 2296 338 282 69 8 chr6 27825327 27825458 -161454096 - LTR16A1 LTR ERVL 0 457 319 336 286 45 84 chr6 27825556 27825734 -161453820 - LTR16C LTR ERVL -288 203 33 709 292 105 45 chr6 27826388 27826741 -161452813 + MER69 DNA AcHobo 35 408 -818 438 225 9 0 chr6 27826754 27826865 -161452689 + MER69 DNA AcHobo 1793 1904 -622 274 358 68 54 chr6 27827625 27828175 -161451379 + L2 LINE L2 1728 2298 -1016 1794 193 96 25 chr6 27828175 27828611 -161450943 + MLT1C LTR MaLR 1 467 0 274 358 68 54 chr6 27828611 27828967 -161450587 + L2 LINE L2 2298 2647 -667 464 281 191 16 chr6 27829694 27830128 -161449426 - LTR33 LTR ERVL -11 510 1 375 203 95 6 chr6 27831323 27831481 -161448073 + MER113 DNA MER1_type? 68 239 -282 1011 204 113 6 chr6 27831494 27831813 -161447741 + L1ME3 LINE L1 5691 6043 -119 2145 82 3 14 chr6 27831814 27832121 -161447433 - AluSc SINE Alu 0 304 1 4777 126 21 1 chr6 27832146 27832937 -161446617 - L1PA14 LINE L1 -17 6144 5338 22 0 0 0 chr6 27832937 27832959 -161446595 + AT_rich Low_complexity Low_complexity 1 22 0 4261 103 2 5 chr6 27832959 27833579 -161445975 - L1PB1 LINE L1 0 6151 5534 718 94 0 0 chr6 27833596 27833702 -161445852 - L1PB1 LINE L1 -680 5471 5366 2050 205 17 0 chr6 27833704 27834172 -161445382 + L1PB1 LINE L1 4885 5360 -786 472 164 77 0 chr6 27834172 27834276 -161445278 - L1PA14 LINE L1 -805 5369 5258 21 0 0 0 chr6 27834774 27834795 -161444759 + AT_rich Low_complexity Low_complexity 1 21 0 2214 212 70 17 chr6 27836286 27837208 -161442346 - L1MC/D LINE L1 -738 5573 4434 2552 262 57 47 chr6 27837218 27838372 -161441182 - L1MC/D LINE L1 -4718 1678 513 1908 209 155 52 chr6 27838439 27838617 -161440937 - L1M4 LINE L1 -2845 3301 3143 2475 61 0 10 chr6 27838617 27838928 -161440626 - AluY SINE Alu -3 308 1 1908 209 155 52 chr6 27838928 27839661 -161439893 - L1M4 LINE L1 -3003 3143 2296 251 296 14 14 chr6 27839699 27839770 -161439784 - L2 LINE L2 -77 3195 3125 269 221 22 110 chr6 27841234 27841370 -161438184 - L1ME LINE L1 -459 5662 5539 1572 204 6 40 chr6 27841425 27841748 -161437806 - AluJo SINE Alu 0 312 1 2282 100 0 3 chr6 27841776 27842076 -161437478 + AluSg SINE Alu 1 299 -11 1628 190 3 20 chr6 27842112 27842412 -161437142 + AluJo SINE Alu 1 295 -17 405 274 92 30 chr6 27842438 27842775 -161436779 - L1ME LINE L1 -752 5394 5061 300 330 39 0 chr6 27842836 27842939 -161436615 - MIR SINE MIR -123 139 33 246 333 32 63 chr6 27842974 27843226 -161436328 + L2 LINE L2 1442 1685 -1629 901 110 0 24 chr6 27843233 27843360 -161436194 - AluSg/x SINE Alu -22 290 167 234 0 0 0 chr6 27843388 27843414 -161436140 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 893 325 87 15 chr6 27843426 27843887 -161435667 + L2 LINE L2 1729 2222 -1092 595 230 97 0 chr6 27844535 27844700 -161434854 - MER63A DNA MER1_type -29 181 1 328 268 0 10 chr6 27845244 27845341 -161434213 - L1ME3A LINE L1 -284 5886 5791 229 233 0 27 chr6 27845988 27846061 -161433493 - L1MEd LINE L1 -5025 1094 1024 434 246 35 12 chr6 27847953 27848124 -161431430 + (TA)n Simple_repeat Simple_repeat 2 176 0 2748 273 150 19 chr6 27849090 27850270 -161429284 - L2 LINE L2 -55 3258 1942 389 127 84 0 chr6 27850275 27850346 -161429208 - MIR SINE MIR -77 185 109 186 340 50 10 chr6 27850789 27850889 -161428665 + MIR SINE MIR 138 241 -21 2155 254 31 20 chr6 27851219 27851806 -161427748 + MLT1E LTR MaLR 1 593 0 868 269 174 56 chr6 27852206 27852638 -161426916 + L2 LINE L2 2320 2802 -512 428 310 115 15 chr6 27853852 27854052 -161425502 + MIR SINE MIR 18 237 -25 2079 139 6 3 chr6 27854723 27855060 -161424494 - THE1B LTR MaLR -26 338 1 1433 204 3 19 chr6 27855060 27855378 -161424176 - L1ME1 LINE L1 -251 5915 5603 5367 24 3 3 chr6 27856232 27856863 -161422691 + L1PA4 LINE L1 5525 6155 0 1455 247 21 21 chr6 27857196 27857617 -161421937 - MER63 DNA MER1_type 0 1061 641 204 111 0 0 chr6 27857640 27857676 -161421878 + (TG)n Simple_repeat Simple_repeat 2 37 0 202 225 0 56 chr6 27857676 27857765 -161421789 + (CATATA)n Simple_repeat Simple_repeat 4 87 0 257 89 22 0 chr6 27857772 27857817 -161421737 + (TA)n Simple_repeat Simple_repeat 1 46 0 245 299 35 46 chr6 27859014 27859101 -161420453 - MIR SINE MIR -163 99 14 225 0 0 0 chr6 27859952 27859977 -161419577 + (CAAAC)n Simple_repeat Simple_repeat 1 25 0 1588 173 29 32 chr6 27861301 27861614 -161417940 + AluJo SINE Alu 1 312 0 22 35 0 0 chr6 27862916 27862945 -161416609 + AT_rich Low_complexity Low_complexity 1 29 0 598 297 99 33 chr6 27863028 27863634 -161415920 + L1M4 LINE L1 3964 4609 -1537 699 240 173 14 chr6 27863762 27863970 -161415584 - MIR SINE MIR -16 246 6 558 159 25 13 chr6 27864109 27864266 -161415288 + CT-rich Low_complexity Low_complexity 4 162 0 342 211 0 131 chr6 27865626 27865801 -161413753 - MER112 DNA MER1_type -101 159 8 371 61 0 0 chr6 27866785 27866834 -161412720 - MADE1 DNA Mariner 0 80 32 318 48 0 0 chr6 27866944 27866986 -161412568 - MADE1 DNA Mariner -38 42 1 252 0 0 0 chr6 27867673 27867701 -161411853 + (CA)n Simple_repeat Simple_repeat 2 29 0 2166 143 35 78 chr6 27868309 27868821 -161410733 + L1MA8 LINE L1 5800 6289 -2 21 0 0 0 chr6 27870002 27870023 -161409531 + AT_rich Low_complexity Low_complexity 1 21 0 642 85 0 21 chr6 27871293 27871387 -161408167 - THE1B LTR MaLR 0 364 273 1489 157 30 8 chr6 27871496 27871764 -161407790 - THE1B LTR MaLR -90 274 1 318 281 130 70 chr6 27871936 27872381 -161407173 - L1 LINE L1 -1472 4674 4203 1583 184 47 44 chr6 27872486 27872850 -161406704 - MLT1A1 LTR MaLR 0 365 1 608 278 28 84 chr6 27872950 27873234 -161406320 - REP3 LTR ERV -170 392 125 30 27 0 0 chr6 27873234 27873271 -161406283 + AT_rich Low_complexity Low_complexity 1 37 0 431 254 33 8 chr6 27873295 27873417 -161406137 - REP3 LTR ERV -437 125 1 21 36 0 0 chr6 27873590 27873618 -161405936 + AT_rich Low_complexity Low_complexity 1 28 0 388 252 65 7 chr6 27873702 27873857 -161405697 + HAL1 LINE L1 1505 1668 -839 384 338 56 8 chr6 27873902 27874168 -161405386 + L1MC/D LINE L1 5446 5724 -2084 537 230 36 24 chr6 27874178 27874343 -161405211 - MIR SINE MIR 0 262 96 258 280 0 32 chr6 27874504 27874597 -161404957 + MLT1I LTR MaLR 320 409 0 793 308 53 15 chr6 27875058 27875396 -161404158 - MLT1I LTR MaLR -33 376 26 26 30 0 0 chr6 27875967 27876000 -161403554 + AT_rich Low_complexity Low_complexity 1 33 0 476 208 120 8 chr6 27876789 27876914 -161402640 - MLT1I LTR MaLR -5 404 266 246 343 19 0 chr6 27876989 27877097 -161402457 - MLT1I LTR MaLR -240 169 60 489 323 139 11 chr6 27877442 27877810 -161401744 - L1MEd LINE L1 -5382 737 323 888 219 92 82 chr6 27878282 27878674 -161400880 - MSTD LTR MaLR 0 396 1 2453 70 3 10 chr6 27878731 27879044 -161400510 - AluSp SINE Alu -2 311 1 184 269 21 11 chr6 27879414 27879507 -161400047 + CT-rich Low_complexity Low_complexity 2 95 0 227 326 0 22 chr6 27879700 27879792 -161399762 - MLT1K LTR MaLR -339 249 160 302 248 19 76 chr6 27879945 27880102 -161399452 - MER112 DNA MER1_type -101 159 12 399 236 29 9 chr6 27880831 27880947 -161398607 + HsTC2 DNA Tc2 1273 1392 -506 2323 112 0 0 chr6 27882605 27882917 -161396637 - AluSx SINE Alu 0 312 1 2884 3 0 0 chr6 27882982 27883292 -161396262 + AluYa5 SINE Alu 1 310 -1 236 289 35 9 chr6 27883633 27883747 -161395807 - MLT1L LTR MaLR -4 611 495 314 265 44 52 chr6 27883908 27884044 -161395510 - MLT1L LTR MaLR -358 257 123 293 226 97 40 chr6 27884147 27884271 -161395283 + L2 LINE L2 3073 3203 -110 303 28 0 0 chr6 27884416 27884452 -161395102 + (CA)n Simple_repeat Simple_repeat 1 36 0 402 307 66 21 chr6 27884534 27884821 -161394733 - ERVL LTR ERVL -440 5324 5025 1783 181 88 38 chr6 27885120 27885539 -161394015 - MLT2B1 LTR ERVL -76 444 5 574 224 75 87 chr6 27885541 27885942 -161393612 + L1ME3A LINE L1 4746 5141 -1005 2177 185 91 33 chr6 27885957 27886509 -161393045 + L1MD3 LINE L1 7405 7988 -7 282 259 111 37 chr6 27886488 27886588 -161392966 + L1ME3A LINE L1 5931 6022 -148 * 1116 147 118 0 chr6 27886588 27886799 -161392755 - MER46A DNA MER2_type 0 236 1 282 259 111 37 chr6 27886799 27886914 -161392640 + L1ME3A LINE L1 6022 6162 -8 1847 174 7 3 chr6 27887048 27887342 -161392212 - AluJo SINE Alu -17 295 1 2209 120 0 0 chr6 27887950 27888241 -161391313 + AluSx SINE Alu 1 291 -21 1522 75 0 0 chr6 27888551 27888738 -161390816 + AluSg/x SINE Alu 115 301 -9 342 115 0 0 chr6 27889590 27889642 -161389912 - MLT2B1 LTR ERVL 0 520 469 472 294 125 0 chr6 27889678 27889862 -161389692 + L2 LINE L2 3102 3308 -5 21 0 0 0 chr6 27891006 27891027 -161388527 + AT_rich Low_complexity Low_complexity 1 21 0 2215 116 3 0 chr6 27891632 27891935 -161387619 + AluSx SINE Alu 1 304 -8 896 98 0 0 chr6 27892080 27892203 -161387351 - AluSg/x SINE Alu -2 310 188 363 252 0 10 chr6 27892283 27892386 -161387168 - Charlie2a DNA MER1_type -1 2861 2760 665 184 202 26 chr6 27892398 27892631 -161386923 - Charlie2a DNA MER1_type -1856 1006 733 443 202 233 45 chr6 27892773 27892996 -161386558 - Charlie2a DNA MER1_type -2435 347 83 434 277 102 73 chr6 27893158 27893569 -161385985 + HAL1b LINE L1 254 676 -672 607 215 97 0 chr6 27893606 27893750 -161385804 - MER96 DNA MER1_type? -16 159 2 748 187 0 8 chr6 27893959 27894093 -161385461 + FLAM_C SINE Alu 1 133 0 613 287 123 74 chr6 27894291 27894385 -161385169 + L1M4 LINE L1 3090 3178 -2968 2287 99 0 0 chr6 27894385 27894692 -161384862 + AluSx SINE Alu 1 307 0 613 287 123 74 chr6 27894692 27895416 -161384138 + L1M4 LINE L1 3178 3949 -2197 2488 69 0 3 chr6 27895897 27896203 -161383351 + AluY SINE Alu 1 305 -6 1780 249 145 23 chr6 27896316 27897066 -161382488 - L1ME3A LINE L1 -27 6143 5302 576 296 6 11 chr6 27898267 27898446 -161381108 + MER5B DNA MER1_type 1 178 0 183 61 0 82 chr6 27898988 27899037 -161380517 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 199 386 144 25 chr6 27899451 27899687 -161379867 + L2 LINE L2 2814 3077 -195 228 259 17 17 chr6 27899728 27899786 -161379768 + L2 LINE L2 3236 3293 -20 797 265 59 0 chr6 27900159 27900363 -161379191 + MIR SINE MIR 21 236 -26 297 0 0 0 chr6 27900366 27900399 -161379155 + (TA)n Simple_repeat Simple_repeat 1 33 0 2099 122 7 14 chr6 27901307 27901601 -161377953 - AluSg SINE Alu -18 292 1 690 235 151 0 chr6 27901647 27901826 -161377728 + MIR SINE MIR 3 208 -54 292 341 92 54 chr6 27903062 27903323 -161376231 - L2 LINE L2 -56 3216 2946 256 296 0 0 chr6 27904170 27904224 -161375330 - L2 LINE L2 -86 3186 3133 663 221 33 11 chr6 27904372 27904553 -161375001 + MER112 DNA MER1_type 65 249 -11 21 0 0 0 chr6 27904560 27904581 -161374973 + AT_rich Low_complexity Low_complexity 1 21 0 2535 40 23 0 chr6 27904646 27904948 -161374606 + AluY SINE Alu 1 309 -2 255 350 92 31 chr6 27905011 27905337 -161374217 - L2 LINE L2 -337 2977 2632 801 268 9 40 chr6 27905575 27905803 -161373751 + MIR SINE MIR 2 222 -40 22 35 0 0 chr6 27907148 27907177 -161372377 + AT_rich Low_complexity Low_complexity 1 29 0 240 171 29 29 chr6 27907229 27907299 -161372255 + A-rich Low_complexity Low_complexity 1 70 0 1122 231 9 69 chr6 27907934 27908134 -161371420 - LTR37A LTR ERV1 -2 424 261 1966 120 33 0 chr6 27908134 27908431 -161371123 + AluSx SINE Alu 1 306 0 1122 231 9 69 chr6 27908431 27908662 -161370892 - LTR37A LTR ERV1 -165 261 18 2303 116 0 0 chr6 27909751 27910045 -161369509 + AluSx SINE Alu 5 298 -14 366 330 45 56 chr6 27910167 27910434 -161369120 + L3 LINE CR1 1255 1518 -59 2251 84 7 7 chr6 27910452 27910749 -161368805 + AluSc SINE Alu 1 297 -12 368 307 64 0 chr6 27911260 27911400 -161368154 + MIR SINE MIR 56 204 -58 2111 130 3 0 chr6 27912005 27912306 -161367248 + AluSx SINE Alu 1 302 -10 186 43 0 0 chr6 27912938 27912961 -161366593 + (TTG)n Simple_repeat Simple_repeat 2 24 0 312 318 139 20 chr6 27913288 27913439 -161366115 - MIR3 SINE MIR -23 185 17 192 365 58 19 chr6 27914385 27914541 -161365013 + MIR SINE MIR 20 181 -81 207 286 36 0 chr6 27914902 27914958 -161364596 + MIR3 SINE MIR 111 168 -40 2013 120 3 55 chr6 27915013 27915338 -161364216 - AluSx SINE Alu -4 308 1 281 280 137 42 chr6 27916094 27916262 -161363292 + MIR SINE MIR 20 203 -59 2556 185 51 19 chr6 27916700 27917186 -161362368 - MLT1D LTR MaLR 0 505 4 1720 146 48 4 chr6 27917312 27917580 -161361974 + AluJo SINE Alu 1 280 -32 719 35 53 9 chr6 27917580 27917693 -161361861 + (GAAA)n Simple_repeat Simple_repeat 4 121 0 357 286 34 50 chr6 27917937 27918019 -161361535 + L2 LINE L2 3197 3278 -35 1921 198 54 9 chr6 27918019 27918368 -161361186 + MLT1A1 LTR MaLR 1 365 0 357 286 34 50 chr6 27918368 27918404 -161361150 + L2 LINE L2 3278 3313 0 2196 68 0 30 chr6 27918635 27918930 -161360624 + L1PA10 LINE L1 5881 6166 -2 2066 117 7 0 chr6 27918966 27919287 -161360267 - AluSx SINE Alu 0 323 1 230 245 92 31 chr6 27920055 27920153 -161359401 + L1ME LINE L1 5727 5830 -332 2098 123 3 7 chr6 27920385 27920686 -161358868 + AluSq SINE Alu 1 300 -13 216 231 0 0 chr6 27920806 27920858 -161358696 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 207 288 12 12 chr6 27920943 27921023 -161358531 + (CA)n Simple_repeat Simple_repeat 1 80 0 909 207 83 87 chr6 27922577 27922843 -161356711 + AluJo SINE Alu 2 266 -46 1173 233 52 39 chr6 27922843 27923148 -161356406 + MLT1E LTR MaLR 285 593 0 2060 131 0 7 chr6 27923729 27924047 -161355507 - AluSx SINE Alu 0 316 1 204 276 0 17 chr6 27924315 27924373 -161355181 - MER5B DNA MER1_type 0 178 122 204 244 0 0 chr6 27924497 27924542 -161355012 - MER5B DNA MER1_type -1 177 133 696 96 0 0 chr6 27924544 27924638 -161354916 - AluSg/x SINE Alu -9 301 208 368 307 53 0 chr6 27924689 27924803 -161354751 - MER5B DNA MER1_type -57 121 2 288 0 0 0 chr6 27925465 27925497 -161354057 + (TG)n Simple_repeat Simple_repeat 1 32 0 207 0 0 0 chr6 27925496 27925519 -161354035 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 1864 142 40 0 chr6 27925675 27925950 -161353604 + AluSq SINE Alu 1 286 -27 22 56 0 0 chr6 27925951 27925987 -161353567 + AT_rich Low_complexity Low_complexity 1 36 0 1572 198 3 22 chr6 27925989 27926303 -161353251 + AluJo SINE Alu 1 308 -4 638 228 264 36 chr6 27926313 27926729 -161352825 - L1MC4 LINE L1 0 8042 7532 360 298 0 0 chr6 27928235 27928339 -161351215 + L1M4 LINE L1 4060 4163 -1983 * 1546 223 19 123 chr6 27928333 27928621 -161350933 + L1M4 LINE L1 2133 2449 -3697 1597 127 0 0 chr6 27928621 27928842 -161350712 + AluSg/x SINE Alu 83 303 -7 1782 124 8 0 chr6 27928843 27929092 -161350462 + AluSx SINE Alu 46 296 -16 1546 223 19 123 chr6 27929092 27929470 -161350084 + L1M4 LINE L1 2448 2732 -3414 4047 174 19 7 chr6 27929477 27930209 -161349345 - L1MA5 LINE L1 0 6300 5560 1127 223 74 11 chr6 27930291 27930560 -161348994 - LTR43 LTR ERV1 -141 461 176 1902 120 0 28 chr6 27930756 27930946 -161348608 - L1MA5 LINE L1 -710 5587 5406 2704 98 8 22 chr6 27930946 27931313 -161348241 + THE1B LTR MaLR 3 364 0 1902 120 0 28 chr6 27931313 27931413 -161348141 - L1MA5 LINE L1 -891 5406 5305 748 206 0 8 chr6 27931413 27931544 -161348010 + FLAM_C SINE Alu 1 130 -3 674 255 35 4 chr6 27931569 27931824 -161347730 + L1M4 LINE L1 2791 3053 -3093 285 109 0 0 chr6 27931987 27932033 -161347521 + (GA)n Simple_repeat Simple_repeat 1 46 0 1837 171 3 10 chr6 27932104 27932409 -161347145 + AluJb SINE Alu 1 303 -9 254 299 69 0 chr6 27932431 27932518 -161347036 + L1MEd LINE L1 561 653 -5466 1885 109 67 4 chr6 27932621 27932937 -161346617 + AluSx SINE Alu 1 333 0 1685 226 72 77 chr6 27932979 27933450 -161346104 - L1MCa LINE L1 -4013 2594 2122 180 0 0 0 chr6 27933450 27933470 -161346084 + (TG)n Simple_repeat Simple_repeat 1 20 0 1944 151 0 0 chr6 27933470 27933749 -161345805 - AluSx SINE Alu -33 279 1 1685 226 72 77 chr6 27933749 27933979 -161345575 - L1MCa LINE L1 -4483 2124 1895 328 304 101 9 chr6 27934163 27934413 -161345141 - L1MCa LINE L1 -4714 1893 1459 2349 93 0 13 chr6 27934421 27934734 -161344820 - AluSg SINE Alu -1 309 1 1932 228 37 14 chr6 27934736 27935653 -161343901 - L1M4 LINE L1 -3320 3062 1088 227 233 11 111 chr6 27935653 27935743 -161343811 - Alu SINE Alu -7 294 214 3424 142 39 24 chr6 27935812 27935899 -161343655 - MER41B LTR ERV1 -35 600 516 2019 140 3 31 chr6 27935899 27936220 -161343334 + AluSx SINE Alu 1 312 0 1947 151 3 22 chr6 27936222 27936534 -161343020 + AluSx SINE Alu 1 306 -6 3424 142 39 24 chr6 27936534 27937034 -161342520 - MER41B LTR ERV1 -119 516 1 1413 115 10 0 chr6 27937034 27937226 -161342328 - MER41B-int LTR ERV1 0 5946 5753 357 154 0 29 chr6 27937228 27937293 -161342261 - Alu SINE Alu -254 48 1 2653 135 20 50 chr6 27937293 27937891 -161341663 - MER41B-int LTR ERV1 -3360 2586 1944 * 11541 122 39 11 chr6 27937870 27939597 -161339957 - MER41B-int LTR ERV1 -4171 1775 1 4428 148 2 2 chr6 27939597 27940232 -161339322 - MER41B LTR ERV1 0 635 1 1300 151 0 59 chr6 27940233 27940435 -161339119 - AluJo SINE Alu -88 224 36 3443 111 78 83 chr6 27940435 27940624 -161338930 + MER41B LTR ERV1 1 189 -446 1683 159 0 4 chr6 27940624 27940888 -161338666 + AluSx SINE Alu 1 263 -49 3443 111 78 83 chr6 27940888 27941336 -161338218 + MER41B LTR ERV1 189 635 0 1300 151 0 59 chr6 27941336 27941371 -161338183 - AluJo SINE Alu -276 36 1 26 50 0 0 chr6 27941375 27941415 -161338139 + AT_rich Low_complexity Low_complexity 1 40 0 2341 161 95 44 chr6 27941693 27942239 -161337315 - MER4B LTR ERV1 -36 574 1 1978 188 51 14 chr6 27942239 27942669 -161336885 - LTR29 LTR ERV1 -15 607 162 250 292 0 0 chr6 27942712 27942777 -161336777 - MER34 LTR ERV1 -457 85 21 2011 117 7 13 chr6 27942839 27943138 -161336416 + AluSx SINE Alu 2 298 -14 801 133 0 23 chr6 27943203 27943331 -161336223 - FLAM_C SINE Alu -13 130 6 810 256 19 0 chr6 27943462 27943622 -161335932 + FRAM SINE Alu 1 163 -3 1458 150 261 18 chr6 27943664 27943947 -161335607 + LTR29 LTR ERV1 1 382 -240 3051 123 103 0 chr6 27943947 27944401 -161335153 + MER61D LTR ERV1 1 501 0 1458 150 261 18 chr6 27944401 27944458 -161335096 + LTR29 LTR ERV1 382 424 -198 526 170 259 34 chr6 27944452 27944599 -161334955 + LTR49 LTR ERV1 416 595 0 * 277 179 43 57 chr6 27944812 27944952 -161334602 + (CA)n Simple_repeat Simple_repeat 2 139 0 434 323 133 9 chr6 27944996 27945327 -161334227 - L2 LINE L2 -19 3294 2923 3956 153 19 6 chr6 27945685 27945851 -161333703 - MER41B LTR ERV1 0 635 473 2167 129 49 52 chr6 27945851 27946216 -161333338 + THE1B LTR MaLR 1 364 0 3956 153 19 6 chr6 27946216 27946676 -161332878 - MER41B LTR ERV1 -162 473 1 266 143 26 91 chr6 27949052 27949129 -161330425 + LTR9 LTR ERV1 455 526 -86 904 137 48 24 chr6 27949253 27949421 -161330133 - LTR49 LTR ERV1 0 595 424 207 100 0 83 chr6 27949463 27949523 -161330031 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1184 146 3 113 chr6 27949557 27949858 -161329696 - LTR29 LTR ERV1 -218 404 137 401 232 71 0 chr6 27949840 27949939 -161329615 - MER34 LTR ERV1 -416 126 21 * 2126 124 3 3 chr6 27950033 27950332 -161329222 - AluSx SINE Alu -13 299 1 764 204 55 35 chr6 27950434 27950635 -161328919 + MER3 DNA MER1_type 1 205 -4 941 165 0 35 chr6 27950692 27950862 -161328692 + AluJb SINE Alu 134 297 -15 2190 68 24 20 chr6 27950864 27951159 -161328395 + AluSc SINE Alu 1 296 -13 1966 126 149 36 chr6 27951169 27951557 -161327997 + LTR23 LTR ERV1 1 432 -5 246 236 0 0 chr6 27951549 27951604 -161327950 - LTR29 LTR ERV1 -385 237 183 * 1712 184 23 3 chr6 27952745 27953050 -161326504 - AluJb SINE Alu -1 311 1 577 269 38 80 chr6 27953542 27953754 -161325800 + MIR SINE MIR 35 237 -25 377 373 12 28 chr6 27954201 27954456 -161325098 + MIR SINE MIR 12 262 0 31 26 0 0 chr6 27955123 27955161 -161324393 + AT_rich Low_complexity Low_complexity 1 38 0 2018 99 52 4 chr6 27955164 27955436 -161324118 - AluSc SINE Alu -24 285 1 613 65 13 0 chr6 27955564 27955641 -161323913 - MADE1 DNA Mariner 0 80 3 188 0 0 69 chr6 27955954 27955983 -161323571 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 647 116 0 0 chr6 27955983 27956069 -161323485 - LTR23 LTR ERV1 -32 405 320 183 42 0 0 chr6 27956635 27956659 -161322895 + (TG)n Simple_repeat Simple_repeat 1 24 0 1667 169 135 51 chr6 27956659 27957073 -161322481 - L1MB3 LINE L1 -16 6167 5719 262 294 272 22 chr6 27957443 27957579 -161321975 - MER91A DNA MER1_type -3 193 24 462 308 126 0 chr6 27958710 27958869 -161320685 + MIR SINE MIR 53 231 -31 978 223 28 87 chr6 27959113 27959226 -161320328 + MER46C DNA MER2_type 5 123 -215 2791 227 29 17 chr6 27959226 27959812 -161319742 - MLT1E LTR MaLR 0 593 1 978 223 28 87 chr6 27959812 27960053 -161319501 + MER46C DNA MER2_type 123 338 0 865 78 9 0 chr6 27960241 27960357 -161319197 - AluSg/x SINE Alu 0 309 193 1902 125 37 17 chr6 27960425 27960722 -161318832 - AluSx SINE Alu -9 303 1 207 105 26 0 chr6 27960747 27960785 -161318769 + T-rich Low_complexity Low_complexity 3 41 0 344 247 122 32 chr6 27960984 27961231 -161318323 - L1M3 LINE L1 -530 5804 5536 271 304 99 33 chr6 27961236 27961417 -161318137 - MIR SINE MIR 0 262 70 1734 177 0 10 chr6 27961503 27961791 -161317763 - AluJo SINE Alu -27 285 1 576 310 65 52 chr6 27961794 27962197 -161317357 - L1ME LINE L1 -393 5777 5370 936 96 8 0 chr6 27962471 27962596 -161316958 + FRAM SINE Alu 20 145 -31 2118 130 10 0 chr6 27962608 27962901 -161316653 + AluSx SINE Alu 1 296 -16 231 218 0 0 chr6 27962910 27962965 -161316589 + GA-rich Low_complexity Low_complexity 3 57 0 229 176 27 0 chr6 27963300 27963374 -161316180 + (TA)n Simple_repeat Simple_repeat 2 77 0 717 193 82 41 chr6 27963386 27963557 -161315997 - AluJo SINE Alu -37 275 98 785 168 69 58 chr6 27963737 27963888 -161315666 - AluJb SINE Alu -19 293 138 1907 157 0 10 chr6 27963888 27964188 -161315366 - AluJb SINE Alu -15 297 1 785 168 69 58 chr6 27964188 27964209 -161315345 - AluJb SINE Alu -174 138 119 201 169 56 11 chr6 27964288 27964377 -161315177 + (CATATA)n Simple_repeat Simple_repeat 4 96 0 964 257 121 50 chr6 27964609 27965553 -161314001 - L1MEd LINE L1 -2659 3470 2460 2161 135 0 0 chr6 27965637 27965941 -161313613 - AluSx SINE Alu -8 304 1 366 287 59 0 chr6 27966113 27966214 -161313340 - L1MEd LINE L1 -5530 589 483 902 253 203 8 chr6 27966224 27966619 -161312935 - LTR33 LTR ERVL -49 472 1 218 235 176 47 chr6 27966917 27967002 -161312552 + MIR SINE MIR 30 125 -83 3098 122 63 87 chr6 27967189 27967796 -161311758 + LTR14B LTR ERVK 17 608 0 561 327 29 5 chr6 27967796 27968001 -161311553 - MIR SINE MIR -7 255 46 1780 138 11 14 chr6 27968024 27968329 -161311225 + AluSx SINE Alu 1 304 0 290 390 0 0 chr6 27968952 27969070 -161310484 + L2 LINE L2 3195 3312 -1 1601 132 25 0 chr6 27969817 27970052 -161309502 + AluSq SINE Alu 1 241 -72 1175 229 124 56 chr6 27970291 27970806 -161308748 + MER34B LTR ERV1 11 560 -5 29 60 0 0 chr6 27971112 27971162 -161308392 + AT_rich Low_complexity Low_complexity 1 50 0 1780 156 45 0 chr6 27971465 27971753 -161307801 + AluJb SINE Alu 1 301 -11 636 238 146 113 chr6 27971843 27972338 -161307216 - MLT1J LTR MaLR 0 511 1 1121 222 111 35 chr6 27972480 27972822 -161306732 - MLT1A2 LTR MaLR -1 373 6 5124 148 44 35 chr6 27972848 27973146 -161306408 - L1MC1 LINE L1 -107 6226 5932 2351 186 79 5 chr6 27973146 27973591 -161305963 + MER66A LTR ERV1 1 478 0 5124 148 44 35 chr6 27973591 27973704 -161305850 - L1MC1 LINE L1 -401 5932 5822 1661 117 98 12 chr6 27973704 27973960 -161305594 - AluSx SINE Alu 0 312 35 5124 148 44 35 chr6 27973960 27974568 -161304986 - L1MC1 LINE L1 -511 5822 5199 2284 142 62 55 chr6 27974568 27974740 -161304814 - Charlie5 DNA MER1_type -1391 1233 1064 901 142 8 15 chr6 27974740 27974874 -161304680 - FLAM_C SINE Alu 0 133 1 2284 142 62 55 chr6 27974874 27975230 -161304324 - Charlie5 DNA MER1_type -1560 1064 701 758 142 0 0 chr6 27975230 27975343 -161304211 - FLAM_C SINE Alu 0 143 31 1077 106 10 212 chr6 27975356 27975545 -161304009 - Charlie5 DNA MER1_type -1950 674 601 1783 143 25 7 chr6 27975545 27975824 -161303730 - AluJb SINE Alu -28 284 1 1077 106 10 212 chr6 27975824 27976020 -161303534 - Charlie5 DNA MER1_type -2023 601 367 31 26 0 0 chr6 27976020 27976058 -161303496 + AT_rich Low_complexity Low_complexity 1 38 0 200 321 138 0 chr6 27976487 27976596 -161302958 + MIR SINE MIR 59 182 -80 32 0 0 0 chr6 27976854 27976886 -161302668 + AT_rich Low_complexity Low_complexity 1 32 0 2038 129 3 10 chr6 27978604 27978906 -161300648 - AluSx SINE Alu -12 300 1 312 285 120 22 chr6 27978949 27979216 -161300338 - L1MC1 LINE L1 -1078 5068 4776 3106 199 79 37 chr6 27979922 27980290 -161299264 - L1ME1 LINE L1 -5 6161 5810 2083 124 24 0 chr6 27980290 27980580 -161298974 - AluSq SINE Alu -16 297 1 3106 199 79 37 chr6 27980580 27981132 -161298422 - L1ME1 LINE L1 -356 5810 5208 787 148 8 16 chr6 27981133 27981285 -161298269 - AluSg/x SINE Alu 0 310 173 1639 208 53 52 chr6 27981285 27981790 -161297764 - L1ME1 LINE L1 -945 5201 4696 2512 122 26 90 chr6 27981861 27981921 -161297633 - L1MA5A LINE L1 -10 6287 6225 192 40 0 0 chr6 27981921 27981946 -161297608 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2240 109 0 0 chr6 27981946 27982230 -161297324 - AluSx SINE Alu -28 284 1 2512 122 26 90 chr6 27982230 27982669 -161296885 - L1MA5A LINE L1 -70 6227 5819 639 260 53 40 chr6 27983008 27983235 -161296319 + MLT1J2 LTR MaLR 97 326 -124 317 242 0 0 chr6 27983716 27983778 -161295776 + L2 LINE L2 3252 3313 0 1737 140 7 42 chr6 27983914 27984222 -161295332 - AluJb SINE Alu -14 298 2 7483 88 4 2 chr6 27984451 27985418 -161294136 + LTR5 LTR ERVK 1 969 0 22 35 0 0 chr6 27985604 27985633 -161293921 + AT_rich Low_complexity Low_complexity 1 29 0 199 313 109 16 chr6 27985738 27985866 -161293688 + MIR3 SINE MIR 68 207 -1 1872 156 7 0 chr6 27986303 27986585 -161292969 - AluSx SINE Alu -28 284 1 2506 70 0 0 chr6 27987088 27987390 -161292164 + AluY SINE Alu 1 302 -9 2120 110 0 0 chr6 27987910 27988192 -161291362 + AluSg SINE Alu 28 309 -1 21 0 0 0 chr6 27988366 27988387 -161291167 + AT_rich Low_complexity Low_complexity 1 21 0 835 154 0 39 chr6 27989049 27989179 -161290375 - FLAM_C SINE Alu -4 129 5 228 362 46 65 chr6 27989897 27990220 -161289334 + L2 LINE L2 988 1304 -2010 313 367 46 0 chr6 27990224 27990333 -161289221 - L2 LINE L2 -8 3305 3192 214 307 27 47 chr6 27990341 27990491 -161289063 + L2 LINE L2 1314 1460 -1854 597 83 73 0 chr6 27990505 27990601 -161288953 - L1MA6 LINE L1 0 6300 6198 341 269 74 7 chr6 27990678 27990827 -161288727 - LTR33 LTR ERVL -8 513 355 550 268 297 4 chr6 27990870 27991146 -161288408 + LTR50 LTR ERVL 101 457 -338 382 231 225 0 chr6 27991158 27991340 -161288214 + LTR50 LTR ERVL 573 795 0 * 459 296 34 22 chr6 27991340 27991627 -161287927 - LTR33 LTR ERVL -164 357 17 270 339 154 9 chr6 27991802 27992035 -161287519 + L2 LINE L2 1698 1964 -1350 437 280 29 46 chr6 27992079 27992252 -161287302 - L1MCa LINE L1 -5318 872 572 255 61 0 0 chr6 27992290 27992323 -161287231 + (TCC)n Simple_repeat Simple_repeat 2 34 0 255 61 0 0 chr6 27992343 27992376 -161287178 + (TCC)n Simple_repeat Simple_repeat 2 34 0 201 74 0 0 chr6 27992396 27992423 -161287131 + (TCC)n Simple_repeat Simple_repeat 2 28 0 1018 239 60 12 chr6 27992494 27992745 -161286809 - L1MCa LINE L1 -5483 562 300 253 346 81 0 chr6 27992823 27992959 -161286595 + L2 LINE L2 2013 2159 -1155 296 351 185 0 chr6 27993010 27993232 -161286322 + L2 LINE L2 2421 2683 -631 2207 120 0 0 chr6 27994093 27994392 -161285162 - AluSx SINE Alu -11 301 3 592 291 34 8 chr6 27994414 27994648 -161284906 + L1ME3A LINE L1 4444 4683 -1463 256 235 158 97 chr6 27994664 27994911 -161284643 + L1ME3A LINE L1 4730 4991 -1155 898 245 121 8 chr6 27994990 27995239 -161284315 + MER77 LTR ERV1 54 330 -275 421 198 59 20 chr6 27995248 27995349 -161284205 + Tigger7 DNA MER2_type 11 115 -2372 * 1217 138 67 5 chr6 27995331 27995541 -161284013 + Tigger7 DNA MER2_type 2264 2486 -1 498 265 48 48 chr6 27995551 27995650 -161283904 + MER77 LTR ERV1 355 456 -149 1606 189 65 82 chr6 27995650 27996125 -161283429 - MLT1C LTR MaLR 0 467 1 498 265 48 48 chr6 27996125 27996172 -161283382 + MER77 LTR ERV1 455 501 -104 387 279 247 0 chr6 27996172 27996330 -161283224 - L1ME LINE L1 -420 5742 5546 465 188 132 95 chr6 27996355 27996505 -161283049 + MER77 LTR ERV1 465 602 -3 258 332 88 5 chr6 27996512 27996659 -161282895 + L1ME3A LINE L1 5040 5212 -934 1499 165 34 15 chr6 27996659 27996925 -161282629 + AluJb SINE Alu 1 271 -41 258 332 88 5 chr6 27996925 27996994 -161282560 + L1ME3A LINE L1 5212 5274 -872 2058 138 23 0 chr6 27997012 27997317 -161282237 + AluSx SINE Alu 1 312 0 781 228 66 115 chr6 27997355 27997763 -161281791 + MLT1B LTR MaLR 3 390 0 675 197 14 45 chr6 27997763 27997930 -161281624 + MLT1A2 LTR MaLR 231 390 0 1458 248 47 88 chr6 27997957 27998727 -161280827 + L1ME3A LINE L1 5417 6154 -16 229 308 66 0 chr6 27999232 27999323 -161280231 + MLT1J1 LTR MaLR 2 98 -348 192 255 20 20 chr6 27999595 27999646 -161279908 + MIR3 SINE MIR 154 204 -4 1826 144 14 4 chr6 27999796 28000073 -161279481 + AluSx SINE Alu 1 280 -32 222 62 0 0 chr6 28000073 28000105 -161279449 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 235 232 105 21 chr6 28000143 28000238 -161279316 + L1MB7 LINE L1 5694 5796 -2012 1829 167 3 3 chr6 28000323 28000622 -161278932 - AluJb SINE Alu -11 301 3 1293 183 71 4 chr6 28000678 28000946 -161278608 + AluJo SINE Alu 1 286 -26 26 0 0 0 chr6 28000955 28000981 -161278573 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr6 28005199 28005222 -161274332 + (T)n Simple_repeat Simple_repeat 1 23 0 603 165 29 0 chr6 28005363 28005466 -161274088 + FLAM_A SINE Alu 1 106 -36 1743 152 14 7 chr6 28006279 28006568 -161272986 + AluSx SINE Alu 1 291 -21 498 216 52 15 chr6 28007916 28008050 -161271504 + L1MB7 LINE L1 6038 6176 -8 702 288 70 89 chr6 28009117 28009631 -161269923 - L2 LINE L2 0 3313 2810 589 254 0 0 chr6 28009634 28009748 -161269806 - MER81 DNA DNA 0 114 1 1038 298 111 26 chr6 28009748 28010244 -161269310 - L2 LINE L2 -513 2801 2264 1875 141 0 10 chr6 28010276 28010566 -161268988 - AluSq SINE Alu -26 287 1 476 191 114 0 chr6 28010664 28010769 -161268785 + MER90 LTR ERV1 25 141 -473 376 184 80 56 chr6 28010864 28010989 -161268565 - L1MC4a LINE L1 -1980 5828 5701 453 190 124 0 chr6 28011008 28011129 -161268425 + L2 LINE L2 2179 2314 -1000 2031 209 70 35 chr6 28012819 28013303 -161266251 + MER34 LTR ERV1 42 542 0 2131 86 28 8 chr6 28014034 28014430 -161265124 - LTR7 LTR ERV1 -2 448 1 1528 221 92 69 chr6 28014479 28014999 -161264555 - MER34 LTR ERV1 0 542 11 27 49 0 0 chr6 28015928 28015969 -161263585 + AT_rich Low_complexity Low_complexity 1 41 0 248 0 31 0 chr6 28016373 28016405 -161263149 + (TA)n Simple_repeat Simple_repeat 2 34 0 865 159 38 0 chr6 28017726 28017883 -161261671 + FRAM SINE Alu 1 160 -16 1379 144 26 96 chr6 28019214 28019526 -161260028 + AluSg SINE Alu 4 293 -17 394 229 83 62 chr6 28019531 28019874 -161259680 - LTR48 LTR ERV1 -119 623 163 336 330 0 0 chr6 28019868 28019962 -161259592 - MER34 LTR ERV1 -448 94 1 * 2142 164 83 20 chr6 28020054 28020566 -161258988 + MER39B LTR ERV1 59 647 -6 2249 93 10 7 chr6 28020816 28021118 -161258436 + AluSq SINE Alu 1 303 -10 649 235 151 47 chr6 28021578 28021876 -161257678 - L2 LINE L2 -2 3311 2983 618 233 79 5 chr6 28022470 28022564 -161256990 + MER33 DNA MER1_type 9 95 -2490 2535 171 42 2 chr6 28022564 28022974 -161256580 - MSTB LTR MaLR 0 426 1 618 233 79 5 chr6 28022974 28023081 -161256473 + MER33 DNA MER1_type 95 225 -99 905 192 145 5 chr6 28023225 28023439 -161256115 - MSTC LTR MaLR -3 425 182 2050 164 154 39 chr6 28023439 28023952 -161255602 + LTR49 LTR ERV1 1 572 -23 1247 224 61 71 chr6 28023980 28024051 -161255503 + L1M4 LINE L1 2117 2187 -3959 2218 105 3 0 chr6 28024051 28024346 -161255208 + AluSq SINE Alu 1 296 -17 1247 224 61 71 chr6 28024346 28024480 -161255074 + L1M4 LINE L1 2187 2321 -3825 3421 181 45 14 chr6 28024480 28025131 -161254423 + LTR51 LTR ERV1 1 671 0 1247 224 61 71 chr6 28025131 28025401 -161254153 + L1M4 LINE L1 2321 2588 -3558 361 209 0 116 chr6 28025450 28025542 -161254012 + MIR SINE MIR 131 205 -57 2425 76 3 0 chr6 28025542 28025844 -161253710 + AluSp SINE Alu 1 303 -10 361 209 0 116 chr6 28025844 28025880 -161253674 + MIR SINE MIR 205 244 -18 313 324 125 5 chr6 28025939 28026155 -161253399 + L1ME LINE L1 5309 5550 -571 953 212 45 38 chr6 28026547 28026625 -161252929 - MER39 LTR ERV1 0 707 631 2172 105 0 3 chr6 28026625 28026921 -161252633 + AluSc SINE Alu 1 295 -14 953 212 45 38 chr6 28026921 28027130 -161252424 - MER39 LTR ERV1 -76 631 418 181 246 29 101 chr6 28027149 28027218 -161252336 + MIR3 SINE MIR 4 67 -141 216 214 0 0 chr6 28027275 28027331 -161252223 + A-rich Low_complexity Low_complexity 1 56 0 3642 118 72 0 chr6 28027332 28027849 -161251705 + MER41C LTR ERV1 1 554 0 2489 58 0 10 chr6 28028008 28028320 -161251234 - AluY SINE Alu -2 309 1 1682 155 7 0 chr6 28029701 28029985 -161249569 - AluSx SINE Alu -22 290 5 293 284 40 0 chr6 28030255 28030329 -161249225 + MER5A DNA MER1_type 30 106 -83 24 0 0 0 chr6 28031663 28031687 -161247867 + AT_rich Low_complexity Low_complexity 1 24 0 1497 223 77 6 chr6 28031737 28032218 -161247336 - MER69 DNA AcHobo -2 2524 2010 1120 296 80 53 chr6 28032216 28032401 -161247153 - MER69 DNA AcHobo -658 568 390 * 2635 43 0 0 chr6 28032401 28032701 -161246853 - AluY SINE Alu -11 300 1 1120 296 80 53 chr6 28032701 28033066 -161246488 - MER69 DNA AcHobo -836 390 3 262 424 5 0 chr6 28033424 28033620 -161245934 - MIR SINE MIR -6 256 60 3870 138 33 71 chr6 28033839 28034557 -161244997 + LTR8 LTR ERV1 1 691 0 1174 188 106 3 chr6 28034697 28034989 -161244565 + MER33 DNA MER1_type 1 322 -2 2268 106 0 10 chr6 28035322 28035634 -161243920 + AluSg SINE Alu 1 309 -1 23 54 0 0 chr6 28035768 28035805 -161243749 + AT_rich Low_complexity Low_complexity 1 37 0 234 0 0 0 chr6 28035806 28035832 -161243722 + (CA)n Simple_repeat Simple_repeat 1 26 0 403 246 49 63 chr6 28035862 28036004 -161243550 + MIR SINE MIR 117 256 -6 2082 116 3 7 chr6 28036245 28036560 -161242994 + AluSx SINE Alu 2 312 0 281 216 39 10 chr6 28036675 28036777 -161242777 + Tigger8 DNA MER2_type 186 290 -376 866 256 46 100 chr6 28036810 28037329 -161242225 + MER34 LTR ERV1 1 491 -51 532 270 63 5 chr6 28037380 28037602 -161241952 + Tigger8 DNA MER2_type 321 555 -111 1791 144 20 13 chr6 28037872 28038177 -161241377 - AluSx SINE Alu -5 307 1 2130 95 21 0 chr6 28038177 28038460 -161241094 - AluSg1 SINE Alu -19 290 1 1540 106 81 93 chr6 28038688 28038871 -161240683 - Tigger7 DNA MER2_type -38 2449 2270 2184 93 0 0 chr6 28038871 28039161 -161240393 + AluSx SINE Alu 10 299 -13 1540 106 81 93 chr6 28039161 28039298 -161240256 - Tigger7 DNA MER2_type -217 2270 2133 21 0 0 0 chr6 28042573 28042594 -161236960 + AT_rich Low_complexity Low_complexity 1 21 0 1721 134 80 0 chr6 28043470 28043746 -161235808 + AluSx SINE Alu 1 298 -14 1947 97 0 12 chr6 28043772 28044029 -161235525 + AluSq SINE Alu 1 254 -59 516 130 0 0 chr6 28044058 28044135 -161235419 + AluS SINE Alu 225 301 -8 354 306 25 0 chr6 28044507 28044628 -161234926 + LTR37B LTR ERV1 1 124 -344 1283 205 37 10 chr6 28044639 28044937 -161234617 - MER33 DNA MER1_type -16 308 3 512 256 30 67 chr6 28045073 28045342 -161234212 + LTR37B LTR ERV1 210 468 0 2325 102 0 0 chr6 28045552 28045845 -161233709 + AluSg SINE Alu 1 293 -17 847 173 0 8 chr6 28046233 28046366 -161233188 - FLAM_C SINE Alu -1 132 1 867 182 6 30 chr6 28046862 28047027 -161232527 + FRAM SINE Alu 1 157 -19 32 0 0 0 chr6 28047030 28047062 -161232492 + AT_rich Low_complexity Low_complexity 1 32 0 369 312 34 73 chr6 28047168 28047402 -161232152 + MARNA DNA Mariner 277 501 -85 346 223 101 40 chr6 28047750 28047898 -161231656 - Charlie1 DNA MER1_type -1 2760 2604 219 214 31 31 chr6 28047928 28048026 -161231528 + (TA)n Simple_repeat Simple_repeat 2 99 0 304 329 180 0 chr6 28048145 28048352 -161231202 + MIR SINE MIR 1 243 -19 787 249 33 57 chr6 28049130 28049375 -161230179 + MIR SINE MIR 2 240 -22 21 36 0 0 chr6 28049375 28049403 -161230151 + AT_rich Low_complexity Low_complexity 1 28 0 1395 161 9 0 chr6 28049986 28050209 -161229345 - AluSx SINE Alu -87 225 1 204 350 58 0 chr6 28050410 28050513 -161229041 - L2 LINE L2 0 3313 3205 280 79 0 0 chr6 28050691 28050729 -161228825 + U2 snRNA snRNA 1 38 -150 2340 80 3 0 chr6 28051718 28052019 -161227535 + AluY SINE Alu 1 302 -9 3485 129 83 45 chr6 28052170 28052264 -161227290 - MER39B LTR ERV1 0 653 564 372 22 0 0 chr6 28052264 28052309 -161227245 + (TTA)n Simple_repeat Simple_repeat 1 45 0 2075 82 34 0 chr6 28052309 28052577 -161226977 - AluSc SINE Alu -32 277 1 3485 129 83 45 chr6 28052577 28053110 -161226444 - MER39B LTR ERV1 -88 565 1 792 184 0 0 chr6 28053186 28053311 -161226243 - FRAM SINE Alu -8 168 44 232 191 128 0 chr6 28053311 28053358 -161226196 + MER20 DNA MER1_type 75 127 -92 2134 172 71 19 chr6 28053390 28053814 -161225740 + MER61-int LTR ERV1 2357 2802 -2415 619 195 76 0 chr6 28053851 28053969 -161225585 + MER52C LTR ERV1 1152 1278 0 908 186 82 0 chr6 28054697 28054880 -161224674 - MER3 DNA MER1_type 0 209 12 795 227 16 27 chr6 28055041 28055226 -161224328 - MLT1A2 LTR MaLR -4 370 188 1304 196 68 7 chr6 28055290 28055570 -161223984 - AluJo SINE Alu -15 297 1 2112 120 31 0 chr6 28055578 28055869 -161223685 - AluSx SINE Alu -12 300 1 806 183 18 24 chr6 28055873 28056037 -161223517 - MLT1A2 LTR MaLR -211 163 1 1551 194 97 16 chr6 28056042 28056424 -161223130 - MLT1C LTR MaLR 0 467 55 3175 166 71 24 chr6 28056479 28057185 -161222369 + LTR1 LTR ERV1 18 785 0 283 83 50 100 chr6 28057185 28057245 -161222309 - MLT1C LTR MaLR -407 60 4 1670 165 3 16 chr6 28057838 28058141 -161221413 - AluJb SINE Alu -13 299 1 1951 144 0 3 chr6 28058249 28058548 -161221006 - AluSx SINE Alu -14 298 1 252 0 0 0 chr6 28058790 28058818 -161220736 + (TG)n Simple_repeat Simple_repeat 2 29 0 349 215 11 33 chr6 28059002 28059102 -161220452 - L1P3 LINE L1 -576 5545 5456 387 0 0 0 chr6 28059185 28059228 -161220326 + (TA)n Simple_repeat Simple_repeat 2 44 0 2107 101 28 3 chr6 28059229 28059516 -161220038 - AluSg SINE Alu -16 294 1 1476 194 88 29 chr6 28060279 28060630 -161218924 + LTR2B LTR ERV1 32 403 -87 1704 60 0 0 chr6 28060630 28060847 -161218707 + Harlequin LTR ERV1 27 243 -6653 * 39060 65 11 15 chr6 28060842 28066532 -161213022 + Harlequin LTR ERV1 1198 6896 0 1861 187 49 49 chr6 28066532 28066981 -161212573 + LTR2 LTR ERV1 1 449 0 1953 127 27 23 chr6 28067329 28067629 -161211925 - AluSx SINE Alu -11 301 1 1358 224 152 8 chr6 28067779 28068180 -161211374 - MLT1C LTR MaLR -6 461 3 1613 175 17 21 chr6 28068349 28068640 -161210914 - AluJo SINE Alu -22 290 1 203 297 14 0 chr6 28069043 28069117 -161210437 + L2 LINE L2 1914 1988 -1326 1073 216 24 72 chr6 28069297 28069472 -161210082 + L1MB7 LINE L1 4622 4775 -1371 2097 108 21 0 chr6 28069472 28069759 -161209795 + AluSx SINE Alu 3 295 -17 1073 216 24 72 chr6 28069759 28069917 -161209637 + L1MB7 LINE L1 4775 4939 -1207 2330 160 108 61 chr6 28069952 28070546 -161209008 + L1MB7 LINE L1 5501 6122 -62 1420 90 0 16 chr6 28070546 28070720 -161208834 - AluSp SINE Alu -6 307 135 2179 115 0 0 chr6 28070720 28071015 -161208539 - AluSq SINE Alu -18 295 1 1420 90 0 16 chr6 28071015 28071029 -161208525 - AluSp SINE Alu -178 135 122 218 278 125 0 chr6 28071315 28071387 -161208167 + MER5B DNA MER1_type 1 81 -97 309 146 109 73 chr6 28071482 28071592 -161207962 - MER51D LTR ERV1 -44 613 500 317 253 42 11 chr6 28072067 28072162 -161207392 + MER5B DNA MER1_type 80 177 -1 219 268 0 14 chr6 28073773 28073844 -161205710 - MIR SINE MIR -80 182 113 338 302 105 20 chr6 28073985 28074263 -161205291 - L2 LINE L2 0 3313 2954 701 182 74 14 chr6 28074358 28074506 -161205048 - MER20 DNA MER1_type -56 163 7 1140 269 42 62 chr6 28074629 28074879 -161204675 - L2 LINE L2 -580 2734 2497 1576 160 56 7 chr6 28074879 28075148 -161204406 + AluJo SINE Alu 1 282 -30 1140 269 42 62 chr6 28075148 28075377 -161204177 - L2 LINE L2 -817 2497 2265 2265 123 3 0 chr6 28075382 28075692 -161203862 + AluSx SINE Alu 1 311 -1 2180 112 10 0 chr6 28077117 28077422 -161202132 + AluSg SINE Alu 1 308 -2 238 232 0 58 chr6 28077584 28077653 -161201901 + MER116 DNA Mariner 2 66 -14 218 291 86 43 chr6 28078629 28078746 -161200808 - L2 LINE L2 -8 3264 3143 256 264 236 28 chr6 28079144 28079288 -161200266 - L2 LINE L2 -557 2757 2584 396 324 6 62 chr6 28080000 28080179 -161199375 + MER91B DNA MER1_type 12 180 -10 561 294 24 57 chr6 28080300 28080428 -161199126 - MIR SINE MIR -21 241 121 2540 75 0 0 chr6 28080428 28080736 -161198818 + AluY SINE Alu 1 308 -3 561 294 24 57 chr6 28080736 28080818 -161198736 - MIR SINE MIR -141 121 38 2301 70 35 7 chr6 28081368 28081654 -161197900 - AluSg SINE Alu -16 294 1 433 188 59 0 chr6 28083584 28083669 -161195885 + L1PB4 LINE L1 6055 6144 -12 332 207 122 98 chr6 28083689 28083853 -161195701 - MIR SINE MIR -5 257 90 2314 103 0 10 chr6 28084105 28084406 -161195148 - AluSx SINE Alu -14 298 1 1473 154 68 11 chr6 28084420 28084699 -161194855 - AluJo SINE Alu -17 295 1 24 0 0 0 chr6 28084824 28084848 -161194706 + AT_rich Low_complexity Low_complexity 1 24 0 2293 94 3 0 chr6 28085033 28085331 -161194223 - AluSg SINE Alu -11 299 1 1508 173 0 23 chr6 28085624 28085761 -161193793 + AluJb SINE Alu 1 131 -181 2465 68 13 0 chr6 28085761 28086068 -161193486 + AluSp SINE Alu 1 311 -2 1508 173 0 23 chr6 28086068 28086196 -161193358 + AluJb SINE Alu 131 260 -52 25 51 0 0 chr6 28086196 28086235 -161193319 + AT_rich Low_complexity Low_complexity 1 39 0 417 39 0 0 chr6 28086887 28086938 -161192616 + (CA)n Simple_repeat Simple_repeat 1 51 0 824 148 0 25 chr6 28087029 28087151 -161192403 - FLAM_C SINE Alu -16 127 9 21 0 0 0 chr6 28088761 28088782 -161190772 + AT_rich Low_complexity Low_complexity 1 21 0 1554 109 134 18 chr6 28089745 28090021 -161189533 + AluSg SINE Alu 2 309 -1 2046 95 7 0 chr6 28090217 28090490 -161189064 + AluSg1 SINE Alu 3 277 -32 180 0 0 0 chr6 28090490 28090510 -161189044 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 249 280 37 28 chr6 28091539 28091591 -161187963 - Charlie4 DNA MER1_type -1837 124 74 207 0 0 0 chr6 28091591 28091614 -161187940 + (CAA)n Simple_repeat Simple_repeat 2 24 0 249 280 37 28 chr6 28091614 28091668 -161187886 - Charlie4 DNA MER1_type -1887 74 17 824 176 152 80 chr6 28091948 28092120 -161187434 - AluJo SINE Alu -1 311 114 1656 154 37 74 chr6 28092120 28092470 -161187084 - MER1B DNA MER1_type 0 337 1 824 176 152 80 chr6 28092470 28092547 -161187007 - AluJo SINE Alu -198 114 44 26 0 0 0 chr6 28093771 28093797 -161185757 + AT_rich Low_complexity Low_complexity 1 26 0 861 178 235 9 chr6 28094248 28094461 -161185093 + AluJo SINE Alu 1 261 -51 2156 110 3 3 chr6 28094756 28095057 -161184497 - AluSq SINE Alu -11 302 2 1732 153 28 7 chr6 28095400 28095688 -161183866 + AluJo SINE Alu 1 294 -18 278 306 75 20 chr6 28095700 28095847 -161183707 + MER112 DNA MER1_type 99 253 -7 320 219 233 41 chr6 28096144 28096290 -161183264 - MIR SINE MIR 0 262 89 838 173 0 0 chr6 28096316 28096449 -161183105 - FLAM_C SINE Alu 0 133 1 23 33 0 0 chr6 28096566 28096596 -161182958 + AT_rich Low_complexity Low_complexity 1 30 0 264 275 107 60 chr6 28097882 28098180 -161181374 + MLT1J LTR MaLR 200 511 0 237 336 98 25 chr6 28098204 28098326 -161181228 + L2 LINE L2 3183 3313 0 243 187 152 123 chr6 28098423 28098594 -161180960 - L1ME LINE L1 -566 5555 5380 262 250 47 70 chr6 28098719 28098847 -161180707 + MIR3 SINE MIR 15 139 -69 919 231 76 43 chr6 28098863 28099305 -161180249 - MLT1B LTR MaLR 0 390 4 731 217 115 33 chr6 28099682 28099986 -161179568 + L1ME4a LINE L1 5513 5841 -280 222 156 16 47 chr6 28100019 28100083 -161179471 + (TA)n Simple_repeat Simple_repeat 1 62 0 789 278 24 40 chr6 28100443 28100691 -161178863 - MIR SINE MIR -1 261 18 29 28 0 0 chr6 28100994 28101030 -161178524 + AT_rich Low_complexity Low_complexity 1 36 0 226 313 12 0 chr6 28101188 28101271 -161178283 + A-rich Low_complexity Low_complexity 3 86 0 1708 155 3 52 chr6 28101631 28101940 -161177614 + AluJb SINE Alu 1 294 -18 609 287 25 30 chr6 28102535 28102737 -161176817 - MIR SINE MIR -51 211 11 224 270 68 0 chr6 28102787 28102861 -161176693 - MIR SINE MIR -51 211 133 22 35 0 0 chr6 28105091 28105120 -161174434 + AT_rich Low_complexity Low_complexity 1 29 0 2032 100 50 0 chr6 28105403 28105683 -161173871 + AluSx SINE Alu 3 296 -16 2395 68 7 3 chr6 28106992 28107302 -161172252 + AluSp SINE Alu 1 311 -2 491 253 108 82 chr6 28108149 28108564 -161170990 - MER101 LTR ERV1 -36 438 13 1595 130 14 42 chr6 28110545 28110830 -161168724 + AluSx SINE Alu 15 291 -21 1928 93 87 14 chr6 28110970 28111259 -161168295 - AluSq SINE Alu -3 310 1 474 234 48 35 chr6 28112038 28112183 -161167371 - MIR SINE MIR -14 248 102 2029 110 0 38 chr6 28112941 28113233 -161166321 + AluSx SINE Alu 11 291 -21 915 112 0 8 chr6 28113235 28113360 -161166194 + AluSc SINE Alu 104 227 -82 24 0 0 0 chr6 28114173 28114197 -161165357 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 28114239 28114266 -161165288 + AT_rich Low_complexity Low_complexity 1 27 0 1820 145 15 0 chr6 28114533 28114802 -161164752 - AluSx SINE Alu -39 273 1 1370 169 65 125 chr6 28115120 28115535 -161164019 - MLT1B LTR MaLR 0 390 1 1997 188 38 40 chr6 28115535 28115598 -161163956 - MLT1B-int LTR MaLR 0 1735 1673 2320 84 0 3 chr6 28115598 28115896 -161163658 + AluY SINE Alu 1 297 -14 1997 188 38 40 chr6 28115896 28116253 -161163301 - MLT1B-int LTR MaLR -62 1673 1316 1449 138 16 103 chr6 28116477 28116789 -161162765 + AluY SINE Alu 11 295 -16 1884 226 16 53 chr6 28116918 28117069 -161162485 - MLT1B-int LTR MaLR -486 885 730 1778 171 3 10 chr6 28117069 28117378 -161162176 + AluJb SINE Alu 1 307 -5 1884 226 16 53 chr6 28117378 28117773 -161161781 - MLT1B-int LTR MaLR -641 730 268 1975 124 4 0 chr6 28117808 28118082 -161161472 - AluSg SINE Alu -35 275 1 1225 179 56 15 chr6 28118094 28118362 -161161192 - MLT1B-int LTR MaLR -1090 281 3 782 185 14 7 chr6 28118363 28118509 -161161045 - MLT1B LTR MaLR -4 386 240 717 316 101 37 chr6 28118660 28119302 -161160252 + L2 LINE L2 2109 3021 -251 333 0 0 0 chr6 28119413 28119450 -161160104 + (TG)n Simple_repeat Simple_repeat 2 38 0 2160 112 0 16 chr6 28119815 28120120 -161159434 - AluSc SINE Alu -9 300 1 1031 101 0 22 chr6 28120120 28120259 -161159295 - AluSq/x SINE Alu -177 136 1 2067 127 17 0 chr6 28120493 28120784 -161158770 + AluSx SINE Alu 4 299 -13 614 114 0 0 chr6 28121018 28121097 -161158457 + MADE1 DNA Mariner 2 80 0 384 294 55 7 chr6 28121275 28121421 -161158133 + L2 LINE L2 3156 3308 -5 615 92 0 0 chr6 28121878 28121965 -161157589 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 1948 125 4 4 chr6 28121965 28122244 -161157310 - AluSx SINE Alu -33 279 1 754 163 198 6 chr6 28122590 28122762 -161156792 - MER3 DNA MER1_type -4 205 1 519 214 125 18 chr6 28122844 28122953 -161156601 - MER53 DNA DNA -3 186 51 510 17 0 0 chr6 28122953 28123012 -161156542 + (TA)n Simple_repeat Simple_repeat 2 60 0 519 214 125 18 chr6 28123012 28123070 -161156484 - MER53 DNA DNA -138 51 1 789 241 97 4 chr6 28123662 28123919 -161155635 - L1MC4a LINE L1 -1840 5968 5688 285 304 125 0 chr6 28123992 28124114 -161155440 + MIR SINE MIR 48 187 -61 25 31 0 0 chr6 28124154 28124186 -161155368 + AT_rich Low_complexity Low_complexity 1 32 0 284 235 0 102 chr6 28124531 28124629 -161154925 + L2 LINE L2 3224 3311 -2 1537 191 10 7 chr6 28124756 28125049 -161154505 + AluJb SINE Alu 3 296 -16 198 0 0 0 chr6 28125093 28125115 -161154439 + (CA)n Simple_repeat Simple_repeat 2 23 0 385 277 107 23 chr6 28125141 28125318 -161154236 + MIR SINE MIR 20 211 -51 566 259 61 14 chr6 28126065 28126212 -161153342 - MER63 DNA MER1_type -55 781 2 896 231 103 30 chr6 28127652 28127979 -161151575 - MLT1F1 LTR MaLR -204 363 1 792 246 131 46 chr6 28128166 28128600 -161150954 + LTR33A LTR ERVL 19 489 -34 302 245 71 10 chr6 28128764 28128862 -161150692 + MIR3 SINE MIR 104 207 -1 1009 231 0 5 chr6 28129174 28129373 -161150181 + AluJb SINE Alu 85 282 -30 386 229 174 0 chr6 28129500 28129644 -161149910 + MIR SINE MIR 78 246 -16 2073 131 0 14 chr6 28129713 28130010 -161149544 - AluSx SINE Alu -19 293 1 1711 159 182 40 chr6 28130051 28130447 -161149107 - LTR47A LTR ERVL 0 452 1 180 0 0 0 chr6 28130486 28130506 -161149048 + (A)n Simple_repeat Simple_repeat 1 20 0 2457 55 0 0 chr6 28130735 28131027 -161148527 - AluY SINE Alu -19 292 1 2567 33 0 20 chr6 28131037 28131392 -161148162 - AluY SINE Alu 0 311 1 301 222 62 12 chr6 28131511 28131592 -161147962 - MIR SINE MIR -25 237 153 419 274 19 7 chr6 28131622 28131844 -161147710 - MLT1I LTR MaLR -36 373 105 265 313 70 17 chr6 28131983 28132098 -161147456 - MIR SINE MIR -108 154 34 1839 225 71 52 chr6 28132104 28132623 -161146931 + MLT1F LTR MaLR 3 531 -11 186 209 0 0 chr6 28133091 28133134 -161146420 + G-rich Low_complexity Low_complexity 4 46 0 261 374 11 0 chr6 28133134 28133225 -161146329 - MLT1G LTR MaLR -288 302 211 290 272 75 47 chr6 28133279 28133492 -161146062 + L1ME3A LINE L1 5744 5962 -208 2042 131 23 7 chr6 28133668 28133973 -161145581 - AluSx SINE Alu -2 310 1 2640 40 0 0 chr6 28134146 28134449 -161145105 - AluY SINE Alu -5 306 4 1943 241 79 31 chr6 28134499 28135148 -161144406 - L1MC4a LINE L1 -21 7787 7096 2527 50 0 0 chr6 28135148 28135447 -161144107 + AluY SINE Alu 1 299 -12 1943 241 79 31 chr6 28135447 28135547 -161144007 - L1MC4a LINE L1 -712 7096 7002 1054 168 6 11 chr6 28135569 28135748 -161143806 - AluJo SINE Alu -15 297 120 2098 215 31 103 chr6 28135774 28136014 -161143540 - L1MC4a LINE L1 -206 5915 6379 2273 118 0 0 chr6 28136014 28136318 -161143236 - AluSx SINE Alu -8 304 1 2098 215 31 103 chr6 28136318 28137001 -161142553 - L1MC4a LINE L1 259 6380 5650 324 256 23 30 chr6 28137511 28137644 -161141910 + MER112 DNA MER1_type 123 254 -6 250 381 68 6 chr6 28137649 28137825 -161141729 + MIR SINE MIR 19 205 -57 181 364 16 23 chr6 28138261 28138390 -161141164 - MER5A DNA MER1_type -5 184 57 2169 109 0 13 chr6 28138402 28138704 -161140850 + AluSq SINE Alu 11 308 -5 1216 154 145 0 chr6 28138862 28138973 -161140581 - AluSx SINE Alu -44 268 174 338 0 24 0 chr6 28138973 28139015 -161140539 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1216 154 145 0 chr6 28139015 28139137 -161140417 - AluSx SINE Alu -138 174 1 672 133 0 19 chr6 28139153 28139258 -161140296 + AluSg/x SINE Alu 207 309 0 2448 63 0 0 chr6 28139907 28140206 -161139348 - AluY SINE Alu -10 301 3 238 174 89 15 chr6 28142463 28142531 -161137023 - AluS SINE Alu -15 287 228 261 0 0 0 chr6 28144464 28144493 -161135061 + (T)n Simple_repeat Simple_repeat 1 29 0 382 274 17 69 chr6 28145408 28145583 -161133971 + L1MEd LINE L1 537 702 -5417 607 157 157 9 chr6 28145641 28145756 -161133798 + FLAM_C SINE Alu 2 133 0 2244 98 3 10 chr6 28145807 28146104 -161133450 + AluSg SINE Alu 1 295 -15 2258 118 0 0 chr6 28146146 28146452 -161133102 + AluSq SINE Alu 1 306 -7 297 235 41 78 chr6 28146477 28146677 -161132877 + L1MEd LINE L1 859 1086 -5069 1847 175 0 7 chr6 28146709 28147017 -161132537 + AluJb SINE Alu 1 306 -6 27 29 0 0 chr6 28147152 28147186 -161132368 + AT_rich Low_complexity Low_complexity 1 34 0 1628 184 20 7 chr6 28147755 28148059 -161131495 - AluSx SINE Alu -4 308 1 332 269 82 20 chr6 28148060 28148305 -161131249 - L1M4 LINE L1 -2158 3988 3729 1104 138 0 0 chr6 28148338 28148498 -161131056 - AluSg/x SINE Alu -16 296 137 1422 246 138 10 chr6 28148594 28148992 -161130562 - MLT1F1 LTR MaLR -2 565 117 844 196 19 0 chr6 28149002 28149160 -161130394 - FRAM SINE Alu -15 161 1 287 264 36 18 chr6 28149166 28149276 -161130278 - MLT1F1 LTR MaLR -450 117 6 35 0 0 0 chr6 28149813 28149848 -161129706 + AT_rich Low_complexity Low_complexity 1 35 0 2315 110 0 3 chr6 28151913 28152221 -161127333 - AluSx SINE Alu -5 307 1 333 174 0 0 chr6 28152223 28152292 -161127262 + T-rich Low_complexity Low_complexity 1 69 0 189 0 0 0 chr6 28153094 28153115 -161126439 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 622 60 0 12 chr6 28153118 28153201 -161126353 - L1PA4 LINE L1 -3 6152 6071 2230 107 3 22 chr6 28153397 28153716 -161125838 + AluSp SINE Alu 1 313 0 21 36 0 0 chr6 28154191 28154219 -161125335 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 28154309 28154330 -161125224 + AT_rich Low_complexity Low_complexity 1 21 0 35 71 0 0 chr6 28154725 28154795 -161124759 + AT_rich Low_complexity Low_complexity 1 70 0 562 118 50 2 chr6 28154911 28155150 -161124404 + AluSg SINE Alu 1 309 -1 671 258 123 27 chr6 28155349 28155609 -161123945 + L2 LINE L2 3023 3307 -6 460 264 74 31 chr6 28155693 28155856 -161123698 + MIR SINE MIR 92 261 -1 228 135 54 0 chr6 28156784 28156821 -161122733 + LTR64 LTR ERVK 407 445 -113 463 193 34 0 chr6 28156823 28156911 -161122643 - MER5A DNA MER1_type -91 98 8 2210 68 3 10 chr6 28157424 28157718 -161121836 + AluSc SINE Alu 1 292 -17 717 161 54 27 chr6 28158088 28158237 -161121317 - ORSL DNA AcHobo 0 275 123 2453 40 24 10 chr6 28158245 28158541 -161121013 - AluY SINE Alu -11 300 1 516 314 147 19 chr6 28158562 28158912 -161120642 - L1MEd LINE L1 -1870 4259 3843 1622 183 17 10 chr6 28158912 28159271 -161120283 - AluSx SINE Alu 0 312 1 516 314 147 19 chr6 28159271 28159350 -161120204 - L1MEd LINE L1 -2286 3843 3775 985 196 12 0 chr6 28159613 28159786 -161119768 + FAM SINE Alu 1 175 0 237 312 38 13 chr6 28160235 28160392 -161119162 - L1MEd LINE L1 -3592 2537 2377 297 245 68 14 chr6 28160402 28160549 -161119005 - L1MEd LINE L1 -5187 932 778 306 290 0 0 chr6 28160661 28160730 -161118824 + L2 LINE L2 3204 3272 0 2205 107 0 46 chr6 28161230 28161557 -161117997 - AluSx SINE Alu 0 312 1 262 267 56 0 chr6 28161690 28161780 -161117774 - L1M4 LINE L1 -3748 2398 2304 252 0 0 0 chr6 28161811 28161839 -161117715 + (TTA)n Simple_repeat Simple_repeat 3 30 0 560 201 22 30 chr6 28162543 28162677 -161116877 + MER92B LTR ERV1 7 139 -497 1063 123 0 0 chr6 28162677 28162823 -161116731 + AluSc SINE Alu 1 146 -163 682 94 0 3 chr6 28162823 28162980 -161116574 - AluSc SINE Alu -108 201 2 655 203 46 33 chr6 28162981 28163041 -161116513 - MER34 LTR ERV1 -377 165 107 4373 39 17 0 chr6 28163041 28163523 -161116031 + LTR2B LTR ERV1 1 490 0 655 203 46 33 chr6 28163523 28163615 -161115939 - MER34 LTR ERV1 -435 107 11 446 244 17 26 chr6 28163623 28163738 -161115816 - L2 LINE L2 -14 3299 3186 1586 155 4 0 chr6 28164035 28164274 -161115280 + AluSx SINE Alu 9 248 -64 237 167 0 0 chr6 28164294 28164348 -161115206 + GA-rich Low_complexity Low_complexity 2 55 0 184 383 0 11 chr6 28164508 28164602 -161114952 + L2 LINE L2 2242 2334 -980 456 303 76 24 chr6 28164610 28164900 -161114654 + L1ME3A LINE L1 5643 5947 -223 355 219 208 43 chr6 28164987 28165105 -161114449 + FLAM_A SINE Alu 1 126 -176 1917 157 0 7 chr6 28165105 28165404 -161114150 - AluSx SINE Alu -15 297 1 2086 137 3 7 chr6 28165479 28165785 -161113769 - AluSx SINE Alu -7 305 1 243 410 8 0 chr6 28166792 28166914 -161112640 + MIR SINE MIR 37 159 -103 1965 118 40 20 chr6 28166921 28167225 -161112329 - AluSg SINE Alu 0 310 1 2404 81 7 0 chr6 28167225 28167532 -161112022 - AluY SINE Alu -2 309 1 2218 100 7 3 chr6 28167533 28167832 -161111722 - AluSq SINE Alu -13 300 1 25 0 0 0 chr6 28168285 28168310 -161111244 + AT_rich Low_complexity Low_complexity 1 25 0 417 108 31 0 chr6 28170380 28170445 -161109109 - MER5A DNA MER1_type -1 188 122 346 205 145 43 chr6 28170759 28170876 -161108678 - L2 LINE L2 -1 3312 3184 2023 151 0 25 chr6 28170888 28171207 -161108347 + AluSx SINE Alu 1 311 -1 2231 118 3 0 chr6 28171489 28171794 -161107760 - AluSp SINE Alu -6 307 2 244 132 0 0 chr6 28171885 28171923 -161107631 - AluSx SINE Alu -7 295 258 1179 139 6 0 chr6 28171926 28172099 -161107455 - AluSx SINE Alu -138 174 1 274 312 80 37 chr6 28172328 28172652 -161106902 - MLT1J LTR MaLR -74 376 64 1456 160 11 18 chr6 28173508 28173783 -161105771 + AluJb SINE Alu 1 273 -39 2436 74 7 7 chr6 28174666 28174975 -161104579 - AluSg SINE Alu -1 309 1 21 0 0 0 chr6 28175642 28175663 -161103891 + AT_rich Low_complexity Low_complexity 1 21 0 502 250 109 77 chr6 28175812 28176043 -161103511 + Charlie4a DNA MER1_type 5 250 -1711 2389 87 0 3 chr6 28176043 28176353 -161103201 + AluY SINE Alu 1 309 -2 502 250 109 77 chr6 28176353 28176433 -161103121 + Charlie4a DNA MER1_type 250 326 -182 1434 164 87 22 chr6 28176442 28176717 -161102837 + AluSx SINE Alu 13 305 -7 477 203 16 0 chr6 28176720 28176843 -161102711 + Charlie4a DNA MER1_type 315 439 -69 1948 142 7 0 chr6 28176844 28177146 -161102408 + AluSx SINE Alu 2 305 0 1973 129 11 0 chr6 28177153 28177458 -161102096 + AluSx SINE Alu 1 308 0 2067 124 0 23 chr6 28177914 28178221 -161101333 + AluSg SINE Alu 1 300 -10 246 328 47 16 chr6 28178369 28178497 -161101057 - MIR3 SINE MIR -76 132 1 23 33 0 0 chr6 28179292 28179322 -161100232 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr6 28179430 28179460 -161100094 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr6 28179949 28179977 -161099577 + AT_rich Low_complexity Low_complexity 1 28 0 368 261 23 102 chr6 28181013 28181121 -161098433 + FRAM SINE Alu 1 91 -211 2040 128 7 0 chr6 28181121 28181417 -161098137 - AluSx SINE Alu -14 298 1 368 261 23 102 chr6 28181417 28181484 -161098070 + FRAM SINE Alu 91 162 -4 180 0 0 0 chr6 28183102 28183122 -161096432 + (A)n Simple_repeat Simple_repeat 1 20 0 1979 122 7 16 chr6 28183549 28183852 -161095702 - AluSg SINE Alu -10 300 1 31 68 0 0 chr6 28186030 28186089 -161093465 + AT_rich Low_complexity Low_complexity 1 59 0 2288 104 0 0 chr6 28186145 28186443 -161093111 - AluSp SINE Alu -15 298 1 715 280 48 72 chr6 28186798 28187313 -161092241 + MLT1D LTR MaLR 3 505 0 32 67 0 0 chr6 28187961 28188021 -161091533 + AT_rich Low_complexity Low_complexity 1 60 0 2891 161 67 13 chr6 28188172 28188712 -161090842 - MER39B LTR ERV1 -84 569 1 25 31 0 0 chr6 28188890 28188922 -161090632 + AT_rich Low_complexity Low_complexity 1 32 0 2229 104 10 0 chr6 28188998 28189295 -161090259 - AluSp SINE Alu -12 301 2 833 199 120 61 chr6 28190771 28191097 -161088457 + LOR1b LTR ERV1 3 347 -114 267 225 169 0 chr6 28191096 28191167 -161088387 + LTR51 LTR ERV1 468 550 -121 * 1861 153 13 7 chr6 28191691 28191992 -161087562 + AluSx SINE Alu 1 303 -9 502 345 38 13 chr6 28192224 28192540 -161087014 - L2 LINE L2 -26 3287 2964 515 253 38 21 chr6 28192774 28192960 -161086594 + LTR43 LTR ERV1 133 321 -281 242 221 70 89 chr6 28192989 28193147 -161086407 + LTR58 LTR ERV1 513 667 -12 1486 264 37 73 chr6 28193181 28193319 -161086235 - L2 LINE L2 -467 2847 2706 222 37 0 0 chr6 28193319 28193346 -161086208 + (CA)n Simple_repeat Simple_repeat 2 28 0 1486 264 37 73 chr6 28193346 28193358 -161086196 - L2 LINE L2 -608 2706 2695 2285 103 0 0 chr6 28193358 28193658 -161085896 - AluY SINE Alu -11 300 1 1486 264 37 73 chr6 28193658 28194233 -161085321 - L2 LINE L2 -619 2695 2147 805 291 151 29 chr6 28194938 28195209 -161084345 + L2 LINE L2 2452 2689 -624 2286 76 0 3 chr6 28195209 28195510 -161084044 + AluY SINE Alu 1 300 -11 805 291 151 29 chr6 28195510 28195811 -161083743 + L2 LINE L2 2689 3086 -227 973 115 0 0 chr6 28195928 28196058 -161083496 + AluSq/x SINE Alu 1 130 -183 1553 123 5 0 chr6 28196062 28196274 -161083280 + AluSx SINE Alu 1 213 -99 2180 118 3 16 chr6 28196665 28196979 -161082575 + AluSx SINE Alu 1 310 -2 215 289 72 0 chr6 28197645 28197728 -161081826 + L2 LINE L2 3225 3313 0 2907 13 0 0 chr6 28197790 28198100 -161081454 - AluY SINE Alu -1 310 1 324 0 0 0 chr6 28198263 28198299 -161081255 + (TG)n Simple_repeat Simple_repeat 1 36 0 299 280 105 0 chr6 28198351 28198494 -161081060 - L1ME4a LINE L1 -254 5867 5710 1398 168 137 19 chr6 28198764 28199086 -161080468 + MLT1B LTR MaLR 24 383 -7 682 211 84 80 chr6 28199211 28199310 -161080244 - MER39 LTR ERV1 0 707 610 2317 72 0 34 chr6 28199310 28199631 -161079923 - AluY SINE Alu -1 310 1 682 211 84 80 chr6 28199631 28199830 -161079724 - MER39 LTR ERV1 -97 610 408 275 305 63 0 chr6 28199873 28199968 -161079586 - MER34 LTR ERV1 -428 114 14 2011 115 3 7 chr6 28200077 28200364 -161079190 - AluSq SINE Alu -27 286 1 2283 92 0 16 chr6 28200381 28200695 -161078859 - AluSg SINE Alu 0 310 2 868 242 29 12 chr6 28200843 28201083 -161078471 - AluJo SINE Alu -47 265 22 1418 157 68 4 chr6 28201120 28201369 -161078185 - AluSg SINE Alu -22 288 24 2216 116 0 7 chr6 28203065 28203368 -161076186 + AluSg SINE Alu 1 301 -9 1023 217 86 45 chr6 28203473 28203619 -161075935 + AluJo SINE Alu 1 139 -163 2264 100 0 16 chr6 28203619 28203928 -161075626 + AluSx SINE Alu 7 310 -2 1023 217 86 45 chr6 28203928 28204071 -161075483 + AluJo SINE Alu 139 302 0 2321 125 8 19 chr6 28204910 28205271 -161074283 + MER39B LTR ERV1 3 359 -294 1629 238 53 37 chr6 28205271 28205977 -161073577 + MER49 LTR ERV1 1 923 0 1620 152 24 1 chr6 28205977 28206256 -161073298 + MER39B LTR ERV1 356 622 0 781 227 35 0 chr6 28206524 28206696 -161072858 - FRAM SINE Alu -1 175 1 2091 135 0 13 chr6 28207040 28207352 -161072202 + AluSx SINE Alu 1 308 -4 990 198 90 12 chr6 28207352 28207695 -161071859 - Charlie5 DNA MER1_type -9 2603 2234 349 231 50 33 chr6 28207698 28207735 -161071819 - MER3 DNA MER1_type 6 168 133 1935 130 0 63 chr6 28207735 28208051 -161071503 + AluSx SINE Alu 1 296 -16 349 231 50 33 chr6 28208051 28208134 -161071420 - MER3 DNA MER1_type -29 133 46 1252 47 0 0 chr6 28211561 28211776 -161067778 - AluSp SINE Alu 0 351 137 22 70 0 0 chr6 28212721 28212764 -161066790 + AT_rich Low_complexity Low_complexity 1 43 0 1939 151 0 10 chr6 28213087 28213379 -161066175 + AluSx SINE Alu 1 289 -23 1453 124 5 0 chr6 28213386 28213587 -161065967 + AluSg/x SINE Alu 82 283 -27 216 0 0 0 chr6 28214398 28214422 -161065132 + (CA)n Simple_repeat Simple_repeat 2 25 0 234 0 0 0 chr6 28214675 28214701 -161064853 + (TAA)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr6 28214700 28214723 -161064831 + (GAA)n Simple_repeat Simple_repeat 2 24 0 * 2120 116 0 14 chr6 28214871 28215204 -161064350 + AluSx SINE Alu 1 329 0 181 346 47 37 chr6 28215901 28216008 -161063546 + MIR SINE MIR 33 140 -68 2951 148 91 36 chr6 28216236 28216853 -161062701 + MER39B LTR ERV1 3 653 0 25 31 0 0 chr6 28217085 28217117 -161062437 + AT_rich Low_complexity Low_complexity 1 32 0 283 277 48 0 chr6 28217207 28217290 -161062264 - Charlie4a DNA MER1_type 0 508 422 400 248 200 23 chr6 28217348 28217582 -161061972 - Charlie4a DNA MER1_type -181 327 53 1922 95 25 18 chr6 28218578 28218861 -161060693 - AluSg SINE Alu -20 290 6 25 31 0 0 chr6 28221157 28221189 -161058365 + AT_rich Low_complexity Low_complexity 1 32 0 2295 96 3 0 chr6 28221774 28222067 -161057487 + AluSq SINE Alu 1 294 -19 886 179 76 0 chr6 28223423 28223466 -161056088 + MER3 DNA MER1_type 8 64 -145 265 279 101 13 chr6 28223466 28223624 -161055930 - MER3 DNA MER1_type -3 206 35 293 288 0 0 chr6 28223688 28223761 -161055793 - MER5A DNA MER1_type -88 101 29 2257 91 0 7 chr6 28224639 28224935 -161054619 + AluSx SINE Alu 1 294 -18 2052 90 15 0 chr6 28224987 28225254 -161054300 + AluSx SINE Alu 20 290 -22 2028 103 21 0 chr6 28226336 28226618 -161052936 - AluSp SINE Alu -25 288 1 1595 137 16 42 chr6 28226708 28227014 -161052540 + AluSx SINE Alu 3 300 -12 2029 105 0 51 chr6 28227023 28227337 -161052217 + AluSx SINE Alu 1 298 -14 530 218 41 29 chr6 28228040 28228210 -161051344 - MER112 DNA MER1_type -12 248 77 294 297 59 34 chr6 28228279 28228397 -161051157 + LTR67 LTR ERVL 51 171 -386 315 275 28 18 chr6 28228571 28228680 -161050874 + LTR67 LTR ERVL 376 485 -72 1021 197 110 8 chr6 28228840 28229094 -161050460 + MLT1D LTR MaLR 3 282 -223 188 263 62 12 chr6 28229102 28229182 -161050372 + L2 LINE L2 2887 2970 -302 198 0 0 0 chr6 28229740 28229762 -161049792 + (A)n Simple_repeat Simple_repeat 1 22 0 554 293 82 9 chr6 28229852 28230263 -161049291 + LTR33 LTR ERVL 25 511 -10 22 0 0 0 chr6 28230776 28230798 -161048756 + AT_rich Low_complexity Low_complexity 1 22 0 326 285 152 26 chr6 28230869 28231139 -161048415 - L1MC4 LINE L1 -153 7889 7586 2255 78 10 3 chr6 28232489 28232785 -161046769 + AluY SINE Alu 1 298 -13 2056 100 17 7 chr6 28233059 28233348 -161046206 - AluSq SINE Alu -21 292 1 1633 97 9 4 chr6 28234067 28234295 -161045259 - AluSg/x SINE Alu 0 312 84 2025 96 7 30 chr6 28234322 28234624 -161044930 + AluSq SINE Alu 2 296 -17 499 229 99 0 chr6 28234665 28234796 -161044758 + MER34 LTR ERV1 360 503 -39 1447 159 16 60 chr6 28234909 28235224 -161044330 - AluSx SINE Alu -11 301 1 22 0 0 0 chr6 28236226 28236248 -161043306 + AT_rich Low_complexity Low_complexity 1 22 0 328 182 0 152 chr6 28237427 28237526 -161042028 - FLAM SINE Alu -6 127 44 2533 43 3 3 chr6 28239079 28239378 -161040176 + AluY SINE Alu 1 299 -12 2476 61 3 0 chr6 28239391 28239688 -161039866 + AluY SINE Alu 1 298 -13 191 35 0 35 chr6 28239706 28239735 -161039819 + (TA)n Simple_repeat Simple_repeat 1 28 0 242 231 39 0 chr6 28240629 28240681 -161038873 - MLT1J LTR MaLR -220 291 238 2160 99 10 10 chr6 28240684 28240978 -161038576 + AluSx SINE Alu 7 300 -12 1752 171 10 13 chr6 28241219 28241518 -161038036 - AluJb SINE Alu -11 301 4 222 37 0 0 chr6 28241703 28241730 -161037824 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 2084 87 44 0 chr6 28241747 28242022 -161037532 - AluSp SINE Alu -26 287 1 329 272 72 16 chr6 28242309 28242434 -161037120 - LTR24B LTR ERV1 -45 531 400 2629 115 10 30 chr6 28242439 28242838 -161036716 + LTR22A LTR ERVK 68 458 0 9312 139 3 6 chr6 28242895 28244283 -161035271 + HERVK22 LTR ERVK 81 1464 -5373 4952 120 13 3 chr6 28244293 28244993 -161034561 + HERVK22 LTR ERVK 4587 5293 -1544 1652 145 4 0 chr6 28244987 28245229 -161034325 + HERVK22 LTR ERVK 6595 6837 0 * 2934 133 13 2 chr6 28245229 28245682 -161033872 + LTR22A LTR ERVK 1 458 0 2058 108 35 3 chr6 28245734 28246021 -161033533 + AluSg SINE Alu 1 296 -14 768 218 6 18 chr6 28246155 28246320 -161033234 - FRAM SINE Alu -6 170 8 188 322 68 34 chr6 28246381 28246499 -161033055 + MIR SINE MIR 29 150 -112 1632 226 113 18 chr6 28246702 28247215 -161032339 + LTR48B LTR ERV1 1 562 -82 672 288 99 39 chr6 28247213 28247564 -161031990 + MLT1J2 LTR MaLR 9 386 -64 * 201 140 0 60 chr6 28247871 28247887 -161031667 + (GAAAA)n Simple_repeat Simple_repeat 5 20 -31 1537 182 9 64 chr6 28247887 28248217 -161031337 + AluJo SINE Alu 1 312 0 201 140 0 60 chr6 28248217 28248250 -161031304 + (GAAAA)n Simple_repeat Simple_repeat 20 51 0 30 27 0 0 chr6 28248787 28248824 -161030730 + AT_rich Low_complexity Low_complexity 1 37 0 2176 100 13 23 chr6 28248988 28249298 -161030256 + AluSx SINE Alu 1 307 -5 2348 92 0 0 chr6 28249298 28249592 -161029962 + AluSp SINE Alu 1 294 -19 3075 127 65 41 chr6 28249789 28250161 -161029393 - LTR49 LTR ERV1 0 595 203 2182 105 10 3 chr6 28250161 28250457 -161029097 - AluSx SINE Alu -14 298 1 3075 127 65 41 chr6 28250457 28250665 -161028889 - LTR49 LTR ERV1 -392 203 1 2204 179 17 20 chr6 28250669 28250722 -161028832 - LTR56 LTR ERV1 0 437 385 2335 81 0 3 chr6 28250722 28251017 -161028537 + AluSc SINE Alu 1 294 -15 1963 72 97 7 chr6 28251022 28251300 -161028254 + AluY SINE Alu 2 304 -7 2204 179 17 20 chr6 28251300 28251705 -161027849 - LTR56 LTR ERV1 -56 381 9 743 194 0 8 chr6 28251705 28251839 -161027715 + FLAM_C SINE Alu 1 133 0 1848 124 0 15 chr6 28252001 28252266 -161027288 - AluSx SINE Alu -12 300 40 453 234 27 9 chr6 28252266 28252377 -161027177 + MER4C LTR ERV1 353 465 0 1885 169 40 30 chr6 28252377 28252780 -161026774 + MER34B LTR ERV1 158 564 -1 751 303 73 24 chr6 28252844 28253174 -161026380 + L2 LINE L2 2967 3312 -1 2022 122 13 16 chr6 28253269 28253573 -161025981 - AluSx SINE Alu -9 303 1 3947 104 78 48 chr6 28253626 28253881 -161025673 + LTR8 LTR ERV1 1 247 -444 1733 131 93 0 chr6 28253881 28254149 -161025405 + AluSx SINE Alu 5 297 -15 3947 104 78 48 chr6 28254149 28254564 -161024990 + LTR8 LTR ERV1 247 691 0 189 132 0 0 chr6 28254926 28254964 -161024590 + (A)n Simple_repeat Simple_repeat 1 38 0 263 267 145 15 chr6 28255159 28255290 -161024264 + MER5B DNA MER1_type 8 155 -23 244 270 153 15 chr6 28255484 28255621 -161023933 - MER5A DNA MER1_type -6 183 28 198 0 0 0 chr6 28257933 28257955 -161021599 + (A)n Simple_repeat Simple_repeat 1 22 0 2119 90 14 3 chr6 28258736 28259025 -161020529 + AluSq SINE Alu 1 292 -21 24 0 0 0 chr6 28260102 28260126 -161019428 + AT_rich Low_complexity Low_complexity 1 24 0 938 193 41 50 chr6 28260328 28260546 -161019008 - AluJb SINE Alu -19 293 78 320 288 41 53 chr6 28260737 28260907 -161018647 + MIR SINE MIR 91 258 -4 1056 214 78 89 chr6 28261708 28262167 -161017387 + MER39 LTR ERV1 1 609 -98 2140 136 83 2 chr6 28262167 28262563 -161016991 - MSTA LTR MaLR 0 428 1 1056 214 78 89 chr6 28262563 28262661 -161016893 + MER39 LTR ERV1 609 707 0 1803 170 95 6 chr6 28262783 28263141 -161016413 - MLT1B LTR MaLR 0 390 1 1927 165 3 0 chr6 28263424 28263727 -161015827 + AluJb SINE Alu 1 304 -8 21 0 0 0 chr6 28264130 28264151 -161015403 + AT_rich Low_complexity Low_complexity 1 21 0 1918 171 7 0 chr6 28264616 28264909 -161014645 - AluSx SINE Alu -17 295 1 2314 64 50 0 chr6 28264914 28265197 -161014357 - AluY SINE Alu -14 297 1 1260 280 174 18 chr6 28266021 28266722 -161012832 - L2 LINE L2 -299 3014 2208 1724 250 56 38 chr6 28267197 28267960 -161011594 + L2 LINE L2 2128 2904 -410 1789 120 58 7 chr6 28268123 28268399 -161011155 + AluSx SINE Alu 1 290 -22 191 264 83 14 chr6 28268545 28268617 -161010937 + L2 LINE L2 3185 3261 -11 2105 87 28 3 chr6 28268982 28269271 -161010283 + AluSc SINE Alu 1 296 -13 2012 99 43 3 chr6 28269381 28269663 -161009891 + AluSg SINE Alu 1 293 -17 248 193 53 0 chr6 28271275 28271332 -161008222 + tRNA-Gly-GGC tRNA tRNA 4 63 -11 389 131 384 40 chr6 28271441 28271540 -161008014 - FLAM_C SINE Alu 0 133 1 684 0 0 0 chr6 28271746 28271818 -161007736 + tRNA-Met-i tRNA tRNA 1 72 -3 2237 134 0 0 chr6 28272610 28272923 -161006631 - AluSq SINE Alu 0 313 1 323 228 101 0 chr6 28273025 28273104 -161006450 - MER68 LTR ERV1 -13 549 463 2922 143 5 2 chr6 28273226 28273654 -161005900 - LTR3 LTR ERVK 0 429 1 41586 170 22 6 chr6 28273657 28280226 -160999328 - HERVK3 LTR ERVK -2 7241 549 2478 80 0 6 chr6 28280226 28280539 -160999015 - AluY SINE Alu 0 311 1 41586 170 22 6 chr6 28280539 28281055 -160998499 - HERVK3 LTR ERVK -6694 549 43 3114 128 0 2 chr6 28281056 28281486 -160998068 - LTR3 LTR ERVK 0 429 1 199 311 111 58 chr6 28281900 28282090 -160997464 - L2 LINE L2 -273 3040 2841 1442 259 49 41 chr6 28282102 28282612 -160996942 - LTR53 LTR ERVL 0 519 6 180 0 0 0 chr6 28282809 28282829 -160996725 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 430 290 143 73 chr6 28282973 28283301 -160996253 + L2 LINE L2 2290 2640 -674 2201 98 0 3 chr6 28283374 28283696 -160995858 + AluSx SINE Alu 1 321 0 216 271 17 0 chr6 28283739 28283798 -160995756 - L2 LINE L2 -8 3305 3246 22 56 0 0 chr6 28284140 28284176 -160995378 + AT_rich Low_complexity Low_complexity 1 36 0 700 14 0 0 chr6 28284897 28284970 -160994584 + tRNA-Arg-CGA tRNA tRNA 1 73 -3 231 276 17 0 chr6 28285055 28285113 -160994441 - L1M1 LINE L1 -6835 730 672 241 176 0 270 chr6 28286737 28286754 -160992800 - L2 LINE L2 0 3313 3293 2171 116 30 21 chr6 28286754 28287089 -160992465 - MER44D DNA MER2_type -1 608 1 241 176 0 270 chr6 28287089 28287293 -160992261 - L2 LINE L2 -20 3293 3152 2721 185 46 13 chr6 28287328 28287853 -160991701 + MER34 LTR ERV1 1 542 0 1650 158 62 7 chr6 28287882 28288154 -160991400 - AluJo SINE Alu -25 287 1 261 0 0 0 chr6 28288229 28288258 -160991296 + (CA)n Simple_repeat Simple_repeat 2 30 0 308 254 56 56 chr6 28288554 28288680 -160990874 - MLT1H LTR MaLR -394 155 30 1335 216 49 45 chr6 28288709 28289029 -160990525 + MER90 LTR ERV1 1 317 -174 1579 124 40 90 chr6 28289029 28289348 -160990206 - AluSx SINE Alu 0 304 1 1335 216 49 45 chr6 28289348 28289520 -160990034 + MER90 LTR ERV1 317 487 -4 297 0 0 0 chr6 28289928 28289961 -160989593 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 741 167 0 0 chr6 28289994 28290102 -160989452 - FLAM_C SINE Alu -34 109 2 253 298 0 48 chr6 28290226 28290330 -160989224 - MER5B DNA MER1_type -63 115 17 727 0 0 24 chr6 28290709 28290791 -160988763 - tRNA-Ser-AGC tRNA tRNA -2 83 4 780 162 0 66 chr6 28291443 28291579 -160987975 - FLAM_C SINE Alu -15 128 2 642 281 45 0 chr6 28291589 28291767 -160987787 - MER90 LTR ERV1 -421 193 8 1436 154 94 34 chr6 28291846 28292113 -160987441 + AluJb SINE Alu 1 283 -29 243 0 0 0 chr6 28292113 28292140 -160987414 + (CAAAG)n Simple_repeat Simple_repeat 2 28 0 407 259 60 60 chr6 28292409 28292564 -160986990 - L2 LINE L2 0 3313 3156 1962 166 3 0 chr6 28292564 28292866 -160986688 + AluJb SINE Alu 1 303 -9 407 259 60 60 chr6 28292866 28292895 -160986659 - L2 LINE L2 -156 3157 3129 325 271 52 10 chr6 28292942 28293038 -160986516 - MER5B DNA MER1_type 0 178 79 500 243 0 18 chr6 28293297 28293408 -160986146 + MLT1E LTR MaLR 45 153 -440 355 111 111 14 chr6 28293414 28293486 -160986068 + MLT1F1 LTR MaLR 489 567 0 1531 191 181 36 chr6 28293764 28294157 -160985397 + MLT1D LTR MaLR 1 450 -55 929 182 13 13 chr6 28294158 28294317 -160985237 + FRAM SINE Alu 1 156 -20 2188 105 7 3 chr6 28294319 28294625 -160984929 + AluSg SINE Alu 1 307 -3 286 146 218 0 chr6 28294625 28294680 -160984874 + MLT1D LTR MaLR 437 503 -2 305 197 82 0 chr6 28294858 28294919 -160984635 - tRNA-Gln-CAG tRNA tRNA -5 70 5 367 236 0 0 chr6 28295992 28296064 -160983490 - tRNA-Gln-CAA tRNA tRNA -3 72 1 685 14 0 0 chr6 28296416 28296488 -160983066 - tRNA-Gln-CAA tRNA tRNA -3 72 1 21 0 0 0 chr6 28296561 28296582 -160982972 + AT_rich Low_complexity Low_complexity 1 21 0 685 13 0 13 chr6 28296963 28297039 -160982515 - tRNA-Gln-CAA tRNA tRNA 0 75 1 766 12 0 0 chr6 28297816 28297898 -160981656 - tRNA-Ser-TCA tRNA tRNA -3 82 1 684 0 0 0 chr6 28298344 28298416 -160981138 - tRNA-Met-i tRNA tRNA -3 72 1 256 217 17 0 chr6 28298858 28298918 -160980636 - tRNA-Gly-GGC tRNA tRNA -13 61 1 1915 82 4 16 chr6 28299171 28299427 -160980127 + AluSx SINE Alu 16 268 -44 180 111 0 0 chr6 28299429 28299456 -160980098 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 229 167 0 0 chr6 28299486 28299522 -160980032 - MLT1F1 LTR MaLR -221 346 311 2197 60 71 3 chr6 28299527 28299809 -160979745 - AluSx SINE Alu -11 301 1 714 137 26 0 chr6 28299869 28299986 -160979568 - MER110A LTR ERV1 -310 158 39 504 118 0 59 chr6 28299993 28300078 -160979476 + AluJ/FLAM SINE Alu 9 88 -224 212 308 0 0 chr6 28300521 28300573 -160978981 + L2 LINE L2 3136 3187 -85 228 262 138 42 chr6 28300638 28301016 -160978538 - L1ME4a LINE L1 -4 6117 5704 1456 110 0 72 chr6 28301022 28301115 -160978439 - PABL_B LTR ERV1 0 667 569 2376 106 0 0 chr6 28301115 28301426 -160978128 - AluSx SINE Alu -1 311 1 1456 110 0 72 chr6 28301426 28301568 -160977986 - PABL_B LTR ERV1 -98 569 449 1118 76 0 44 chr6 28301567 28301725 -160977829 - PABL_B LTR ERV1 -516 151 1 * 2349 171 70 19 chr6 28301748 28302141 -160977413 + MER67A LTR ERV1 5 428 -115 2070 93 11 7 chr6 28302141 28302421 -160977133 + AluSq SINE Alu 1 281 -32 2349 171 70 19 chr6 28302421 28302502 -160977052 + MER67A LTR ERV1 428 503 -40 2172 105 13 10 chr6 28302581 28302886 -160976668 - AluSq SINE Alu -7 306 1 364 250 86 88 chr6 28302961 28303222 -160976332 - MER87 LTR ERV1 -393 148 11 560 80 13 0 chr6 28303225 28303300 -160976254 + MLT1B LTR MaLR 313 388 -2 198 0 0 0 chr6 28303424 28303446 -160976108 + (A)n Simple_repeat Simple_repeat 1 22 0 2299 95 0 3 chr6 28303455 28303750 -160975804 + AluSx SINE Alu 1 294 -18 680 14 0 0 chr6 28304322 28304394 -160975160 - tRNA-Trp tRNA tRNA -3 72 1 556 147 39 0 chr6 28305107 28305209 -160974345 + MER5A DNA MER1_type 84 189 0 2229 69 4 0 chr6 28305267 28305575 -160973979 + AluSp SINE Alu 37 345 0 1528 166 40 34 chr6 28305611 28305936 -160973618 - MLT1B LTR MaLR 0 390 64 397 150 0 0 chr6 28305988 28306048 -160973506 - MLT1B LTR MaLR -310 80 21 675 245 143 8 chr6 28306141 28306378 -160973176 - HAL1 LINE L1 -2236 271 3 23 33 0 0 chr6 28306572 28306602 -160972952 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 28306817 28306839 -160972715 + AT_rich Low_complexity Low_complexity 1 22 0 305 177 32 0 chr6 28307638 28307700 -160971854 - AluYb8 SINE Alu -8 300 237 1259 63 0 6 chr6 28307701 28307860 -160971694 - AluSg SINE Alu -152 158 1 680 27 0 0 chr6 28308038 28308111 -160971443 + tRNA-Arg-CGA tRNA tRNA 1 73 -3 470 216 30 126 chr6 28308312 28308511 -160971043 + MER5A DNA MER1_type 9 188 -1 377 260 141 40 chr6 28308690 28309027 -160970527 + L1MC4 LINE L1 7052 7415 -393 306 273 127 9 chr6 28309047 28309157 -160970397 + L1MC5 LINE L1 7334 7456 -505 1358 134 9 18 chr6 28309162 28309385 -160970169 - AluJb SINE Alu -7 305 85 297 128 0 0 chr6 28309386 28309433 -160970121 + (GGGA)n Simple_repeat Simple_repeat 1 47 0 1045 174 82 56 chr6 28309577 28309847 -160969707 - AluJo SINE Alu -35 277 1 361 288 146 9 chr6 28309887 28310120 -160969434 + L1MC4 LINE L1 7778 8042 0 183 273 0 0 chr6 28310909 28310953 -160968601 + L2 LINE L2 3188 3231 -41 23 33 0 0 chr6 28311026 28311056 -160968498 + AT_rich Low_complexity Low_complexity 1 30 0 1282 71 12 12 chr6 28311205 28311373 -160968181 + AluSg/x SINE Alu 133 300 -10 321 308 82 44 chr6 28311532 28311714 -160967840 - L2 LINE L2 -918 2396 2208 2201 75 19 44 chr6 28312236 28312554 -160967000 - AluSg SINE Alu 0 310 1 776 24 0 0 chr6 28312809 28312894 -160966660 + tRNA-Ser-TCC tRNA tRNA 1 85 0 687 14 0 0 chr6 28313360 28313433 -160966121 + tRNA-Arg-CGC tRNA tRNA 1 73 -3 2040 108 14 14 chr6 28313691 28313987 -160965567 - AluSx SINE Alu -13 299 4 639 296 89 41 chr6 28314439 28314875 -160964679 - HAL1 LINE L1 -155 2352 1896 552 233 72 104 chr6 28315124 28315317 -160964237 + MIR SINE MIR 58 244 -18 684 0 0 0 chr6 28315521 28315593 -160963961 - tRNA-Met-i tRNA tRNA -3 72 1 688 27 0 0 chr6 28316661 28316736 -160962818 - tRNA-Trp tRNA tRNA 0 75 1 180 111 0 0 chr6 28317600 28317627 -160961927 + (CCCCG)n Simple_repeat Simple_repeat 1 27 0 445 115 86 137 chr6 28318042 28318181 -160961373 + MIR SINE MIR 124 255 -7 843 159 28 44 chr6 28318227 28318409 -160961145 - AluJb SINE Alu 0 312 134 1616 131 46 19 chr6 28318857 28319116 -160960438 + AluSx SINE Alu 30 295 -17 653 264 126 12 chr6 28319124 28319468 -160960086 + MLT1J2 LTR MaLR 32 436 -14 1899 162 34 0 chr6 28319828 28320123 -160959431 + AluJb SINE Alu 1 305 -7 2250 93 0 27 chr6 28320123 28320424 -160959130 + AluSg SINE Alu 1 293 -17 21 57 0 0 chr6 28320534 28320569 -160958985 + AT_rich Low_complexity Low_complexity 1 35 0 651 265 103 0 chr6 28320624 28320809 -160958745 + MER63A DNA MER1_type 5 208 -2 2431 123 42 24 chr6 28320862 28321286 -160958268 - MSTB1 LTR MaLR 0 432 1 215 298 39 67 chr6 28321286 28321390 -160958164 - MIR SINE MIR -8 254 154 1153 257 73 34 chr6 28321507 28321943 -160957611 + MER90 LTR ERV1 107 559 -16 637 255 113 74 chr6 28322131 28322457 -160957097 - LTR33A LTR ERVL -107 416 78 1766 148 0 0 chr6 28322594 28322903 -160956651 + AluSx SINE Alu 18 326 0 2168 113 0 0 chr6 28323099 28323400 -160956154 - AluSg SINE Alu -9 301 1 1098 199 145 0 chr6 28323721 28323983 -160955571 + MER58B DNA MER1_type 1 300 -41 437 226 0 0 chr6 28324554 28324647 -160954907 - L2 LINE L2 0 3313 3221 358 302 86 29 chr6 28324653 28324792 -160954762 + MLT1L LTR MaLR 322 468 -147 265 179 54 0 chr6 28325429 28325485 -160954069 + MLT1L LTR MaLR 505 563 -52 536 118 16 20 chr6 28326194 28326290 -160953264 + MLT1C LTR MaLR 3 94 -280 907 88 161 0 chr6 28326730 28326867 -160952687 - AluSg SINE Alu -150 160 2 201 291 0 0 chr6 28327073 28327128 -160952426 + G-rich Low_complexity Low_complexity 4 58 0 262 125 0 62 chr6 28327130 28327194 -160952360 + (GGGAGA)n Simple_repeat Simple_repeat 2 61 0 190 155 48 24 chr6 28327238 28327322 -160952232 + GA-rich Low_complexity Low_complexity 4 89 0 1902 154 0 6 chr6 28327646 28327957 -160951597 - AluSx SINE Alu -3 309 1 840 144 0 69 chr6 28327957 28328117 -160951437 - AluJb SINE Alu -21 291 143 273 266 149 43 chr6 28328237 28328425 -160951129 - L2 LINE L2 -64 3249 3042 207 171 73 0 chr6 28328429 28328470 -160951084 + MIR SINE MIR 121 164 -98 646 338 56 45 chr6 28328692 28329543 -160950011 + MER66-int LTR ERV1 3312 4349 -3512 2246 97 0 7 chr6 28329543 28329853 -160949701 + AluSg SINE Alu 1 308 -2 646 338 56 45 chr6 28329853 28330121 -160949433 + MER66-int LTR ERV1 4349 4613 -3248 237 132 0 0 chr6 28330402 28330440 -160949114 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 805 118 0 0 chr6 28330479 28330589 -160948965 - FLAM_C SINE Alu -25 118 9 567 293 66 35 chr6 28330813 28331131 -160948423 + MER66-int LTR ERV1 3438 3765 -520 377 183 92 67 chr6 28331424 28331544 -160948010 + MER66-int LTR ERV1 6539 6661 -15 460 295 6 12 chr6 28331746 28331919 -160947635 + MER41B LTR ERV1 258 429 -206 1727 156 30 41 chr6 28332182 28332536 -160947018 + LTR29 LTR ERV1 303 622 0 285 316 51 34 chr6 28332666 28332783 -160946771 + MIR SINE MIR 4 122 -140 184 272 18 79 chr6 28333281 28333395 -160946159 + MIR SINE MIR 156 262 0 427 260 70 45 chr6 28333427 28333627 -160945927 + L1MC5 LINE L1 7534 7738 -223 1419 157 59 21 chr6 28333633 28333920 -160945634 + AluJo SINE Alu 1 298 -14 202 122 20 20 chr6 28334069 28334118 -160945436 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 2270 93 0 0 chr6 28334138 28334438 -160945116 - AluSx SINE Alu -7 305 6 2260 81 3 13 chr6 28334451 28334760 -160944794 - AluSx SINE Alu -6 306 1 1641 124 127 0 chr6 28334765 28335024 -160944530 - AluSx SINE Alu -20 292 1 315 218 0 0 chr6 28335193 28335248 -160944306 - L2 LINE L2 -4 3309 3255 1658 166 0 17 chr6 28335261 28335556 -160943998 + AluJb SINE Alu 1 290 -22 23 54 0 0 chr6 28336371 28336408 -160943146 + AT_rich Low_complexity Low_complexity 1 37 0 2686 151 2 28 chr6 28336521 28336650 -160942904 - MER70A-int LTR ERVL -2977 2046 1915 3956 153 51 3 chr6 28336650 28337322 -160942232 + MER44D DNA MER2_type 1 704 -1 2686 151 2 28 chr6 28337322 28337628 -160941926 - MER70A-int LTR ERVL -3108 1915 1622 3242 157 57 4 chr6 28337629 28338177 -160941377 - MER70A-int LTR ERVL -3832 1191 615 501 108 0 0 chr6 28338191 28338256 -160941298 - U6 snRNA snRNA -41 66 2 657 148 0 57 chr6 28338259 28338281 -160941273 - MER70A-int LTR ERVL -4376 647 625 2538 114 40 25 chr6 28338281 28338532 -160941022 - L1MA2 LINE L1 0 6304 6041 2181 121 0 0 chr6 28338532 28338845 -160940709 - AluSq SINE Alu 0 313 1 2538 114 40 25 chr6 28338845 28339041 -160940513 - L1MA2 LINE L1 -263 6041 5850 657 148 0 57 chr6 28339041 28339140 -160940414 - MER70A-int LTR ERVL -4398 625 533 558 188 10 20 chr6 28339150 28339251 -160940303 + MER70-int LTR ERVL 27 126 -4897 * 1589 202 24 12 chr6 28339248 28339589 -160939965 - MER70A-int LTR ERVL -4512 511 167 3208 117 29 64 chr6 28339589 28340217 -160939337 - MER4B LTR ERV1 0 779 1 867 213 12 12 chr6 28340218 28340387 -160939167 - MER70A-int LTR ERVL -4854 169 1 2021 187 8 124 chr6 28340387 28340921 -160938633 - MER70A LTR ERVL 0 472 1 254 223 1 129 chr6 28340965 28341029 -160938525 + MLT1J1 LTR MaLR 346 389 -57 1293 221 50 7 chr6 28341029 28341328 -160938226 - AluJb SINE Alu 0 312 1 254 223 1 129 chr6 28341328 28341373 -160938181 + MLT1J1 LTR MaLR 389 438 -8 1422 152 23 38 chr6 28341446 28341710 -160937844 + MER4E LTR ERV1 1 260 -519 2268 99 0 10 chr6 28341711 28342024 -160937530 - AluSq SINE Alu -3 310 1 1789 148 33 10 chr6 28342030 28342199 -160937355 - AluSx SINE Alu 0 312 131 1851 162 0 6 chr6 28342199 28342514 -160937040 - AluSq SINE Alu 0 313 1 1789 148 33 10 chr6 28342514 28342649 -160936905 - AluSx SINE Alu -181 131 1 1392 133 84 0 chr6 28342654 28342879 -160936675 - AluJb SINE Alu -11 301 58 680 87 0 0 chr6 28342891 28342983 -160936571 - AluSg/x SINE Alu -8 304 213 1967 118 0 0 chr6 28342985 28343294 -160936260 + AluSx SINE Alu 1 309 0 954 111 0 15 chr6 28343659 28343794 -160935760 + FLAM_C SINE Alu 1 133 0 348 275 33 11 chr6 28343827 28343918 -160935636 - MIR3 SINE MIR -34 174 82 289 183 0 67 chr6 28344023 28344083 -160935471 - 7SK RNA RNA -2 191 136 757 154 0 0 chr6 28344087 28344197 -160935357 + AluSq/x SINE Alu 2 111 -202 39 0 0 0 chr6 28344320 28344359 -160935195 + AT_rich Low_complexity Low_complexity 1 39 0 1938 109 33 0 chr6 28344359 28344634 -160934920 - AluSg SINE Alu -26 284 1 1982 145 0 3 chr6 28344761 28345065 -160934489 - AluSx SINE Alu -7 305 3 26 0 0 0 chr6 28345074 28345100 -160934454 + AT_rich Low_complexity Low_complexity 1 26 0 2272 89 0 13 chr6 28345424 28345738 -160933816 - AluSg SINE Alu 0 310 1 187 300 57 14 chr6 28345953 28346023 -160933531 + MIR SINE MIR 93 165 -97 210 326 157 11 chr6 28346110 28346288 -160933266 + L2 LINE L2 1343 1546 -1768 651 279 14 23 chr6 28346353 28346568 -160932986 - L2 LINE L2 0 3313 3101 453 151 27 0 chr6 28346574 28346647 -160932907 - AluJ/FRAM SINE Alu -21 291 217 501 220 23 38 chr6 28346649 28346781 -160932773 - AluJo/FLAM SINE Alu -170 132 3 2119 264 41 32 chr6 28346820 28347577 -160931977 - L2 LINE L2 -314 2999 2237 416 164 0 0 chr6 28347635 28347702 -160931852 - MLT1E LTR MaLR 0 593 527 1227 139 0 65 chr6 28347702 28347932 -160931622 + AluSg/x SINE Alu 83 297 -13 459 230 23 0 chr6 28347933 28348020 -160931534 - MLT1J LTR MaLR -53 601 513 262 284 83 18 chr6 28348096 28348205 -160931349 + L2 LINE L2 2536 2651 -663 965 204 78 0 chr6 28348556 28348762 -160930792 - LTR65 LTR ERV1 -267 402 181 42 20 0 0 chr6 28349078 28349127 -160930427 + AT_rich Low_complexity Low_complexity 1 49 0 531 243 89 106 chr6 28349133 28349537 -160930017 - MLT1J LTR MaLR -107 404 8 396 59 0 0 chr6 28350695 28350746 -160928808 + (TG)n Simple_repeat Simple_repeat 2 52 0 180 0 0 0 chr6 28350913 28350933 -160928621 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 307 331 35 28 chr6 28350993 28351135 -160928419 + L1ME LINE L1 5652 5794 -370 288 315 82 26 chr6 28351428 28351660 -160927894 - L1ME LINE L1 -350 5771 5527 386 309 102 17 chr6 28352290 28352643 -160926911 - L1MC4a LINE L1 -157 5964 5582 305 299 10 31 chr6 28352704 28352801 -160926753 + L2 LINE L2 3213 3307 -6 379 234 71 52 chr6 28353031 28353185 -160926369 - L2 LINE L2 -656 2658 2502 933 306 45 32 chr6 28354486 28354531 -160925023 + LTR33 LTR ERVL 52 95 -426 2193 208 61 24 chr6 28354531 28355085 -160924469 - MER90 LTR ERV1 0 575 1 933 306 45 32 chr6 28355085 28355503 -160924051 + LTR33 LTR ERVL 95 521 0 237 286 0 0 chr6 28356003 28356059 -160923495 - L2 LINE L2 -13 3259 3204 787 273 99 96 chr6 28356153 28356203 -160923351 + L1MC4a LINE L1 5254 5302 -2506 1863 129 16 3 chr6 28356203 28356506 -160923048 + AluSx SINE Alu 1 307 -5 787 273 99 96 chr6 28356506 28356906 -160922648 + L1MC4a LINE L1 5302 5709 -2099 2111 126 0 0 chr6 28356906 28357199 -160922355 - AluSx SINE Alu -19 293 1 787 273 99 96 chr6 28357199 28357443 -160922111 + L1MC4a LINE L1 5709 5951 -1857 692 274 97 30 chr6 28357497 28357734 -160921820 - MIR SINE MIR -3 259 7 225 0 0 0 chr6 28358458 28358483 -160921071 + (T)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr6 28358809 28358829 -160920725 + (A)n Simple_repeat Simple_repeat 1 20 0 351 0 0 0 chr6 28359422 28359461 -160920093 + (A)n Simple_repeat Simple_repeat 1 39 0 203 357 70 23 chr6 28360276 28360405 -160919149 + MIR SINE MIR 68 202 -60 1323 215 67 39 chr6 28360475 28360865 -160918689 - LTR33 LTR ERVL -95 426 26 193 77 0 0 chr6 28361000 28361026 -160918528 - MIR SINE MIR -113 149 124 2326 71 0 22 chr6 28361151 28361462 -160918092 + AluY SINE Alu 7 310 -1 487 296 35 23 chr6 28362506 28362678 -160916876 - MIR SINE MIR -37 225 52 443 314 108 5 chr6 28362678 28362863 -160916691 - MIR SINE MIR 0 262 59 235 253 67 0 chr6 28363454 28363529 -160916025 + L2 LINE L2 3190 3269 -3 1577 256 90 21 chr6 28363663 28364054 -160915500 - MLT1E2 LTR MaLR -8 618 180 1539 190 38 7 chr6 28364054 28364364 -160915190 - AluJb SINE Alu 0 302 1 1577 256 90 21 chr6 28364364 28364558 -160914996 - MLT1E2 LTR MaLR -446 180 1 374 285 66 117 chr6 28364561 28364835 -160914719 - LTR16C LTR ERVL -62 429 170 445 240 60 53 chr6 28365475 28365625 -160913929 - MLT1G LTR MaLR -18 532 362 1885 136 0 29 chr6 28366892 28367202 -160912352 - AluSx SINE Alu -6 306 6 1067 89 17 17 chr6 28367815 28367995 -160911559 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 437 164 8 37 chr6 28367998 28368132 -160911422 + GA-rich Low_complexity Low_complexity 4 133 0 225 65 0 0 chr6 28369083 28369114 -160910440 + (TCC)n Simple_repeat Simple_repeat 2 32 0 1249 188 14 32 chr6 28369356 28369663 -160909891 - AluJo SINE Alu 0 307 6 370 254 136 0 chr6 28369681 28369901 -160909653 - MER33 DNA MER1_type -69 255 6 183 26 103 0 chr6 28370141 28370180 -160909374 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2176 100 3 7 chr6 28370770 28371070 -160908484 - AluSg SINE Alu -11 299 1 252 306 24 0 chr6 28371181 28371266 -160908288 + MER94 DNA DNA 36 122 -12 869 173 0 0 chr6 28372669 28372802 -160906752 + FLAM_C SINE Alu 1 133 0 967 272 86 58 chr6 28373931 28374060 -160905494 - L2 LINE L2 -4 3309 3185 1917 136 17 0 chr6 28374060 28374355 -160905199 + AluSg SINE Alu 1 300 -10 967 272 86 58 chr6 28374355 28374956 -160904598 - L2 LINE L2 -128 3185 2567 1361 256 56 24 chr6 28378970 28379470 -160900084 - Charlie1b DNA MER1_type 0 523 8 2106 175 30 33 chr6 28379500 28379989 -160899565 + MLT2B3 LTR ERVL 1 508 -41 333 91 0 36 chr6 28380023 28380078 -160899476 + MLT2B3 LTR ERVL 461 513 -2 969 174 153 17 chr6 28380283 28380518 -160899036 - MLT1A1 LTR MaLR 0 365 99 2104 267 80 24 chr6 28380702 28381698 -160897856 - L2 LINE L2 0 3313 2236 2311 241 47 24 chr6 28381751 28382331 -160897223 - MLT1E LTR MaLR 0 593 1 1854 161 7 0 chr6 28382531 28382841 -160896713 - AluSx SINE Alu 0 312 1 797 181 6 25 chr6 28382927 28383087 -160896467 - FRAM SINE Alu -20 156 1 213 318 23 11 chr6 28383371 28383459 -160896095 + L2 LINE L2 2273 2361 -953 793 289 40 4 chr6 28383589 28383842 -160895712 + MIR SINE MIR 1 262 0 286 238 0 38 chr6 28383879 28383959 -160895595 + L2 LINE L2 2585 2661 -653 233 317 228 0 chr6 28384240 28384385 -160895169 - MIR SINE MIR -13 249 72 731 189 7 21 chr6 28384743 28384886 -160894668 - MIR SINE MIR -41 221 81 211 244 73 37 chr6 28384933 28385015 -160894539 + L2 LINE L2 3229 3313 0 1062 167 81 18 chr6 28385079 28385300 -160894254 - LTR65 LTR ERV1 -259 410 176 2003 129 7 0 chr6 28385307 28385610 -160893944 + AluSx SINE Alu 6 310 -2 584 212 63 86 chr6 28385832 28385886 -160893668 - MLT1J LTR MaLR -24 487 433 239 0 32 0 chr6 28385886 28385917 -160893637 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 584 212 63 86 chr6 28385917 28386117 -160893437 - MLT1J LTR MaLR -78 433 239 1910 125 10 0 chr6 28386782 28387070 -160892484 + AluSx SINE Alu 1 291 -21 282 332 10 25 chr6 28387925 28388127 -160891427 + L1ME LINE L1 5637 5835 -286 365 271 19 58 chr6 28388252 28388288 -160891266 - L1ME LINE L1 -307 5814 5778 1995 138 0 0 chr6 28388288 28388586 -160890968 - AluSx SINE Alu -14 298 1 365 271 19 58 chr6 28388586 28388756 -160890798 - L1ME LINE L1 -343 5778 5616 740 162 0 0 chr6 28388922 28389033 -160890521 - AluJb SINE Alu -190 122 12 277 316 15 19 chr6 28389778 28389984 -160889570 - L1MC/D LINE L1 -302 5819 5618 277 295 11 32 chr6 28390082 28390177 -160889377 + L2 LINE L2 3215 3307 -6 340 242 85 26 chr6 28390413 28390566 -160888988 - L2 LINE L2 -663 2651 2490 2422 197 19 21 chr6 28391878 28392402 -160887152 - MER90 LTR ERV1 0 614 92 848 308 44 27 chr6 28392444 28392853 -160886701 + LTR33 LTR ERVL 106 521 0 180 268 0 0 chr6 28393344 28393385 -160886169 - L2 LINE L2 -5 3267 3227 935 282 107 57 chr6 28393593 28394135 -160885419 + L1MC4 LINE L1 5383 5951 -1857 452 312 6 19 chr6 28394200 28394357 -160885197 - MIR SINE MIR -101 161 7 221 139 23 0 chr6 28395407 28395450 -160884104 + A-rich Low_complexity Low_complexity 2 45 0 203 219 16 47 chr6 28395696 28395760 -160883794 + A-rich Low_complexity Low_complexity 5 66 0 186 43 0 0 chr6 28395917 28395940 -160883614 + (CA)n Simple_repeat Simple_repeat 2 24 0 262 239 11 0 chr6 28395940 28396032 -160883522 + L1MC4 LINE L1 6610 6702 -1340 207 0 0 0 chr6 28396221 28396244 -160883310 + (A)n Simple_repeat Simple_repeat 1 23 0 1307 234 55 55 chr6 28397372 28397773 -160881781 - LTR33 LTR ERVL -95 426 26 193 77 0 0 chr6 28397908 28397934 -160881620 - MIR SINE MIR -113 149 124 490 244 71 36 chr6 28399103 28399271 -160880283 - MIR SINE MIR -37 225 52 438 305 98 6 chr6 28399274 28399438 -160880116 - MIR SINE MIR -3 259 81 2041 113 3 0 chr6 28399911 28400195 -160879359 - AluSc SINE Alu -15 294 10 221 253 67 0 chr6 28400350 28400425 -160879129 + L2 LINE L2 3190 3269 -3 1773 249 92 20 chr6 28400553 28401094 -160878460 - MLT1E2 LTR MaLR 0 626 47 419 280 61 106 chr6 28401147 28401458 -160878096 - LTR16C LTR ERVL -60 431 135 509 230 15 46 chr6 28402084 28402236 -160877318 - MLT1G LTR MaLR -19 532 361 2288 132 13 24 chr6 28402461 28402840 -160876714 - THE1C LTR MaLR 0 375 1 10144 124 6 48 chr6 28402840 28404489 -160875065 - THE1C-int LTR MaLR 0 1580 1 1745 107 65 4 chr6 28404489 28404751 -160874803 - THE1C LTR MaLR 0 375 98 203 152 0 0 chr6 28405929 28405962 -160873592 + (TG)n Simple_repeat Simple_repeat 1 33 0 446 202 132 97 chr6 28407554 28407812 -160871742 - MER33 DNA MER1_type 0 324 58 314 250 14 0 chr6 28408818 28408890 -160870664 + MER94 DNA DNA 36 108 -26 1850 141 7 7 chr6 28409026 28409316 -160870238 - AluSx SINE Alu -22 290 1 1080 190 10 24 chr6 28410049 28410254 -160869300 + AluJb SINE Alu 87 288 -24 918 179 51 10 chr6 28410599 28410795 -160868759 + AluJo SINE Alu 89 292 -20 299 195 0 69 chr6 28411310 28411397 -160868157 + CT-rich Low_complexity Low_complexity 3 83 0 901 294 137 15 chr6 28412176 28412822 -160866732 - L2 LINE L2 -4 3309 2567 817 156 0 15 chr6 28413322 28413457 -160866097 + FLAM_C SINE Alu 1 133 0 1906 122 10 7 chr6 28415527 28415823 -160863731 + AluSp SINE Alu 1 297 -16 1211 240 95 33 chr6 28417341 28417824 -160861730 - Charlie1b DNA MER1_type -1 522 10 2786 157 84 34 chr6 28417854 28418377 -160861177 + MLT2B3 LTR ERVL 6 554 0 6869 113 29 18 chr6 28418522 28419581 -160859973 + MER11C LTR ERVK 1 1071 0 1290 249 89 46 chr6 28419609 28420126 -160859428 - L2 LINE L2 -492 2822 2284 1982 137 0 0 chr6 28420138 28420449 -160859105 + AluSx SINE Alu 2 312 0 1837 228 93 53 chr6 28420565 28421135 -160858419 - MLT1E LTR MaLR 0 593 1 801 191 6 44 chr6 28421398 28421581 -160857973 - AluJo SINE Alu -11 301 126 816 265 56 4 chr6 28422092 28422341 -160857213 + MIR SINE MIR 1 262 0 292 266 0 0 chr6 28422378 28422442 -160857112 + L2 LINE L2 2585 2648 -666 204 325 140 9 chr6 28422768 28422882 -160856672 - MIR SINE MIR -62 200 72 687 243 160 24 chr6 28423224 28423430 -160856124 - MIR SINE MIR -25 237 4 250 191 0 0 chr6 28423468 28423515 -160856039 + L2 LINE L2 3267 3313 0 891 174 119 15 chr6 28423590 28423791 -160855763 - LTR65 LTR ERV1 -267 402 181 2129 102 3 10 chr6 28423801 28424115 -160855439 + AluSq SINE Alu 1 312 -1 560 246 17 132 chr6 28424346 28424635 -160854919 - MLT1J LTR MaLR -17 494 239 447 19 0 0 chr6 28425993 28426045 -160853509 + (TG)n Simple_repeat Simple_repeat 1 52 0 247 344 15 31 chr6 28426249 28426444 -160853110 + L1ME LINE L1 5644 5835 -286 389 272 61 77 chr6 28426581 28426786 -160852768 - L1M4 LINE L1 -373 5801 5601 646 195 9 9 chr6 28426929 28427042 -160852512 - AluJo SINE Alu -190 122 10 342 299 120 44 chr6 28427675 28428018 -160851536 - L1ME4a LINE L1 -157 5964 5593 282 253 32 53 chr6 28428098 28428193 -160851361 + L2 LINE L2 3215 3307 -6 379 234 71 52 chr6 28428423 28428577 -160850977 - L2 LINE L2 -656 2658 2502 937 294 59 35 chr6 28429877 28429922 -160849632 + LTR33 LTR ERVL 52 94 -427 1900 234 64 18 chr6 28429922 28430472 -160849082 - MER90 LTR ERV1 0 575 1 937 294 59 35 chr6 28430472 28430885 -160848669 + LTR33 LTR ERVL 94 521 0 239 225 50 75 chr6 28431392 28431472 -160848082 - L2 LINE L2 -5 3267 3190 738 266 154 82 chr6 28431537 28431936 -160847618 + L1MC4a LINE L1 5263 5728 -2080 1864 137 3 0 chr6 28431936 28432248 -160847306 - AluSx SINE Alu 0 313 1 738 266 154 82 chr6 28432248 28432490 -160847064 + L1MC4a LINE L1 5728 5951 -1857 705 314 54 4 chr6 28432546 28432585 -160846969 - MIR SINE MIR -2 260 224 1728 166 0 3 chr6 28432585 28432880 -160846674 - AluSx SINE Alu -14 298 5 705 314 54 4 chr6 28432880 28433082 -160846472 - MIR SINE MIR -38 224 7 225 346 87 16 chr6 28435721 28435848 -160843706 + MIR SINE MIR 68 203 -59 1363 242 62 31 chr6 28435921 28436310 -160843244 - LTR33 LTR ERVL -95 426 26 536 279 35 23 chr6 28437609 28437781 -160841773 - MIR SINE MIR -37 225 52 439 297 110 6 chr6 28437784 28437966 -160841588 - MIR SINE MIR -3 259 59 235 253 67 0 chr6 28438557 28438632 -160840922 + L2 LINE L2 3190 3269 -3 1150 130 0 25 chr6 28438803 28439003 -160840551 - AluSc SINE Alu -17 292 98 870 198 6 6 chr6 28439117 28439279 -160840275 - FRAM SINE Alu -17 159 1 1144 162 9 24 chr6 28439647 28439857 -160839697 - AluJb SINE Alu -19 293 87 246 32 0 0 chr6 28439861 28439892 -160839662 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1725 171 0 0 chr6 28439895 28440176 -160839378 - AluSx SINE Alu -31 281 1 1853 147 0 7 chr6 28440744 28441051 -160838503 - AluSx SINE Alu -7 305 1 318 259 47 0 chr6 28441352 28441437 -160838117 - MER94 DNA DNA -10 124 36 424 122 102 51 chr6 28441438 28441536 -160838018 + AluSg/x SINE Alu 203 305 -7 597 206 39 105 chr6 28442536 28442822 -160836732 + MER33 DNA MER1_type 58 324 0 263 43 0 65 chr6 28443930 28443976 -160835578 + (TC)n Simple_repeat Simple_repeat 1 43 0 485 242 26 44 chr6 28445848 28446007 -160833547 + MLT1G LTR MaLR 362 515 -15 240 216 0 0 chr6 28446275 28446326 -160833228 - MLT1K LTR MaLR -348 240 190 445 309 52 100 chr6 28446571 28446920 -160832634 + LTR16C LTR ERVL 98 429 -62 1669 219 82 45 chr6 28447000 28447117 -160832437 + MLT1E2 LTR MaLR 71 182 -444 1553 180 51 3 chr6 28447117 28447412 -160832142 + AluJo SINE Alu 1 309 -3 1669 219 82 45 chr6 28447412 28447783 -160831771 + MLT1E2 LTR MaLR 182 577 -49 1100 120 0 0 chr6 28447798 28447956 -160831598 + AluY SINE Alu 1 158 -153 487 296 35 23 chr6 28498514 28498686 -160780868 - MIR SINE MIR -37 225 52 443 314 108 5 chr6 28498686 28498871 -160780683 - MIR SINE MIR 0 262 59 235 253 67 0 chr6 28499462 28499537 -160780017 + L2 LINE L2 3190 3269 -3 1593 254 90 21 chr6 28499671 28500062 -160779492 - MLT1E2 LTR MaLR -8 618 180 1539 190 38 7 chr6 28500062 28500372 -160779182 - AluJb SINE Alu 0 302 1 1593 254 90 21 chr6 28500372 28500566 -160778988 - MLT1E2 LTR MaLR -446 180 1 374 285 66 117 chr6 28500569 28500843 -160778711 - LTR16C LTR ERVL -62 429 170 445 240 60 53 chr6 28501483 28501633 -160777921 - MLT1G LTR MaLR -18 532 362 1885 136 0 29 chr6 28502900 28503210 -160776344 - AluSx SINE Alu -6 306 6 1046 94 17 17 chr6 28503819 28503999 -160775555 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 437 164 8 37 chr6 28504002 28504136 -160775418 + GA-rich Low_complexity Low_complexity 4 133 0 225 65 0 0 chr6 28505087 28505118 -160774436 + (TCC)n Simple_repeat Simple_repeat 2 32 0 1249 188 14 32 chr6 28505360 28505667 -160773887 - AluJo SINE Alu 0 307 6 370 254 136 0 chr6 28505685 28505905 -160773649 - MER33 DNA MER1_type -69 255 6 183 26 103 0 chr6 28506145 28506184 -160773370 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2176 100 3 7 chr6 28506774 28507074 -160772480 - AluSg SINE Alu -11 299 1 252 306 24 0 chr6 28507185 28507270 -160772284 + MER94 DNA DNA 36 122 -12 869 173 0 0 chr6 28508673 28508806 -160770748 + FLAM_C SINE Alu 1 133 0 967 272 86 58 chr6 28509935 28510064 -160769490 - L2 LINE L2 -4 3309 3185 1917 136 17 0 chr6 28510064 28510359 -160769195 + AluSg SINE Alu 1 300 -10 967 272 86 58 chr6 28510359 28510960 -160768594 - L2 LINE L2 -128 3185 2567 1361 256 56 24 chr6 28514974 28515474 -160764080 - Charlie1b DNA MER1_type 0 523 8 2106 175 30 33 chr6 28515504 28515993 -160763561 + MLT2B3 LTR ERVL 1 508 -41 333 91 0 36 chr6 28516027 28516082 -160763472 + MLT2B3 LTR ERVL 461 513 -2 969 174 153 17 chr6 28516287 28516522 -160763032 - MLT1A1 LTR MaLR 0 365 99 2104 267 80 24 chr6 28516706 28517702 -160761852 - L2 LINE L2 0 3313 2236 2311 241 47 24 chr6 28517755 28518335 -160761219 - MLT1E LTR MaLR 0 593 1 1819 168 7 0 chr6 28518537 28518847 -160760707 - AluSx SINE Alu 0 312 1 797 181 6 25 chr6 28518933 28519093 -160760461 - FRAM SINE Alu -20 156 1 228 274 0 0 chr6 28519413 28519464 -160760090 + L2 LINE L2 2311 2361 -953 793 289 40 4 chr6 28519594 28519847 -160759707 + MIR SINE MIR 1 262 0 279 250 0 38 chr6 28519884 28519964 -160759590 + L2 LINE L2 2585 2661 -653 233 317 228 0 chr6 28520246 28520391 -160759163 - MIR SINE MIR -13 249 72 731 189 7 21 chr6 28520748 28520891 -160758663 - MIR SINE MIR -41 221 81 211 244 73 37 chr6 28520938 28521020 -160758534 + L2 LINE L2 3229 3313 0 1062 167 81 18 chr6 28521084 28521305 -160758249 - LTR65 LTR ERV1 -259 410 176 2003 129 7 0 chr6 28521312 28521615 -160757939 + AluSx SINE Alu 6 310 -2 515 200 32 158 chr6 28521837 28522122 -160757432 - MLT1J LTR MaLR -24 487 239 1910 125 10 0 chr6 28522787 28523075 -160756479 + AluSx SINE Alu 1 291 -21 295 332 10 25 chr6 28523930 28524132 -160755422 + L1ME LINE L1 5637 5835 -286 346 275 19 58 chr6 28524257 28524293 -160755261 - L1ME LINE L1 -307 5814 5778 1995 138 0 0 chr6 28524293 28524591 -160754963 - AluSx SINE Alu -14 298 1 346 275 19 58 chr6 28524591 28524761 -160754793 - L1ME LINE L1 -343 5778 5616 740 162 0 0 chr6 28524927 28525038 -160754516 - AluJb SINE Alu -190 122 12 277 316 15 19 chr6 28525783 28525989 -160753565 - L1MC/D LINE L1 -302 5819 5618 277 295 11 32 chr6 28526087 28526182 -160753372 + L2 LINE L2 3215 3307 -6 340 242 85 26 chr6 28526418 28526571 -160752983 - L2 LINE L2 -663 2651 2490 2422 197 19 21 chr6 28527883 28528407 -160751147 - MER90 LTR ERV1 0 614 92 818 307 44 29 chr6 28528449 28528859 -160750695 + LTR33 LTR ERVL 106 521 0 180 268 0 0 chr6 28529350 28529391 -160750163 - L2 LINE L2 -5 3267 3227 935 282 107 57 chr6 28529599 28530141 -160749413 + L1MC4 LINE L1 5383 5951 -1857 452 312 6 19 chr6 28530206 28530363 -160749191 - MIR SINE MIR -101 161 7 221 139 23 0 chr6 28531413 28531456 -160748098 + A-rich Low_complexity Low_complexity 2 45 0 203 219 16 47 chr6 28531702 28531766 -160747788 + A-rich Low_complexity Low_complexity 5 66 0 186 43 0 0 chr6 28531923 28531946 -160747608 + (CA)n Simple_repeat Simple_repeat 2 24 0 262 239 11 0 chr6 28531946 28532038 -160747516 + L1MC4 LINE L1 6610 6702 -1340 207 0 0 0 chr6 28532227 28532250 -160747304 + (A)n Simple_repeat Simple_repeat 1 23 0 1307 234 55 55 chr6 28533378 28533779 -160745775 - LTR33 LTR ERVL -95 426 26 193 77 0 0 chr6 28533914 28533940 -160745614 - MIR SINE MIR -113 149 124 490 244 71 36 chr6 28535109 28535277 -160744277 - MIR SINE MIR -37 225 52 438 305 98 6 chr6 28535280 28535444 -160744110 - MIR SINE MIR -3 259 81 2041 113 3 0 chr6 28535917 28536201 -160743353 - AluSc SINE Alu -15 294 10 221 253 67 0 chr6 28536356 28536431 -160743123 + L2 LINE L2 3190 3269 -3 1798 248 92 20 chr6 28536559 28537100 -160742454 - MLT1E2 LTR MaLR 0 626 47 419 280 61 106 chr6 28537153 28537464 -160742090 - LTR16C LTR ERVL -60 431 135 509 230 15 46 chr6 28538090 28538242 -160741312 - MLT1G LTR MaLR -19 532 361 2288 132 13 24 chr6 28538467 28538846 -160740708 - THE1C LTR MaLR 0 375 1 10144 124 6 48 chr6 28538846 28540495 -160739059 - THE1C-int LTR MaLR 0 1580 1 1745 107 65 4 chr6 28540495 28540757 -160738797 - THE1C LTR MaLR 0 375 98 203 152 0 0 chr6 28541935 28541968 -160737586 + (TG)n Simple_repeat Simple_repeat 1 33 0 446 202 132 97 chr6 28543560 28543818 -160735736 - MER33 DNA MER1_type 0 324 58 314 250 14 0 chr6 28544824 28544896 -160734658 + MER94 DNA DNA 36 108 -26 1850 141 7 7 chr6 28545032 28545322 -160734232 - AluSx SINE Alu -22 290 1 1080 190 10 24 chr6 28546055 28546260 -160733294 + AluJb SINE Alu 87 288 -24 918 179 51 10 chr6 28546605 28546801 -160732753 + AluJo SINE Alu 89 292 -20 299 195 0 69 chr6 28547316 28547403 -160732151 + CT-rich Low_complexity Low_complexity 3 83 0 901 294 137 15 chr6 28548182 28548828 -160730726 - L2 LINE L2 -4 3309 2567 817 156 0 15 chr6 28549328 28549463 -160730091 + FLAM_C SINE Alu 1 133 0 1906 122 10 7 chr6 28551533 28551829 -160727725 + AluSp SINE Alu 1 297 -16 1211 240 95 33 chr6 28553347 28553830 -160725724 - Charlie1b DNA MER1_type -1 522 10 2771 157 84 34 chr6 28553860 28554383 -160725171 + MLT2B3 LTR ERVL 6 554 0 6869 113 29 18 chr6 28554528 28555587 -160723967 + MER11C LTR ERVK 1 1071 0 1290 249 89 46 chr6 28555615 28556132 -160723422 - L2 LINE L2 -492 2822 2284 1982 137 0 0 chr6 28556144 28556455 -160723099 + AluSx SINE Alu 2 312 0 1837 228 93 53 chr6 28556571 28557141 -160722413 - MLT1E LTR MaLR 0 593 1 801 191 6 44 chr6 28557404 28557587 -160721967 - AluJo SINE Alu -11 301 126 816 265 56 4 chr6 28558098 28558347 -160721207 + MIR SINE MIR 1 262 0 292 266 0 0 chr6 28558384 28558448 -160721106 + L2 LINE L2 2585 2648 -666 204 325 140 9 chr6 28558774 28558888 -160720666 - MIR SINE MIR -62 200 72 687 243 160 24 chr6 28559230 28559436 -160720118 - MIR SINE MIR -25 237 4 250 191 0 0 chr6 28559474 28559521 -160720033 + L2 LINE L2 3267 3313 0 891 174 119 15 chr6 28559596 28559797 -160719757 - LTR65 LTR ERV1 -267 402 181 2129 102 3 10 chr6 28559807 28560121 -160719433 + AluSq SINE Alu 1 312 -1 531 250 21 132 chr6 28560352 28560640 -160718914 - MLT1J LTR MaLR -17 494 239 375 23 0 0 chr6 28561998 28562042 -160717512 + (TG)n Simple_repeat Simple_repeat 1 44 0 247 344 15 31 chr6 28562246 28562441 -160717113 + L1ME LINE L1 5644 5835 -286 646 195 9 9 chr6 28562926 28563039 -160716515 - AluJo SINE Alu -190 122 10 342 299 120 44 chr6 28563672 28564015 -160715539 - L1ME4a LINE L1 -157 5964 5593 282 253 32 53 chr6 28564095 28564190 -160715364 + L2 LINE L2 3215 3307 -6 379 234 71 52 chr6 28564420 28564574 -160714980 - L2 LINE L2 -656 2658 2502 937 294 59 35 chr6 28565874 28565919 -160713635 + LTR33 LTR ERVL 52 94 -427 1900 234 64 18 chr6 28565919 28566469 -160713085 - MER90 LTR ERV1 0 575 1 937 294 59 35 chr6 28566469 28566882 -160712672 + LTR33 LTR ERVL 94 521 0 239 225 50 75 chr6 28567389 28567469 -160712085 - L2 LINE L2 -5 3267 3190 738 266 154 82 chr6 28567534 28567933 -160711621 + L1MC4a LINE L1 5263 5728 -2080 1864 137 3 0 chr6 28567933 28568245 -160711309 - AluSx SINE Alu 0 313 1 738 266 154 82 chr6 28568245 28568487 -160711067 + L1MC4a LINE L1 5728 5951 -1857 705 314 54 4 chr6 28568543 28568582 -160710972 - MIR SINE MIR -2 260 224 1728 166 0 3 chr6 28568582 28568877 -160710677 - AluSx SINE Alu -14 298 5 705 314 54 4 chr6 28568877 28569079 -160710475 - MIR SINE MIR -38 224 7 225 346 87 16 chr6 28571718 28571845 -160707709 + MIR SINE MIR 68 203 -59 1363 242 62 31 chr6 28571918 28572307 -160707247 - LTR33 LTR ERVL -95 426 26 536 279 35 23 chr6 28573606 28573778 -160705776 - MIR SINE MIR -37 225 52 439 297 110 6 chr6 28573781 28573963 -160705591 - MIR SINE MIR -3 259 59 235 253 67 0 chr6 28574554 28574629 -160704925 + L2 LINE L2 3190 3269 -3 1956 115 0 14 chr6 28574800 28575096 -160704458 - AluSc SINE Alu -17 292 1 1685 217 82 45 chr6 28575111 28575482 -160704072 - MLT1E2 LTR MaLR -49 577 182 1544 180 51 3 chr6 28575482 28575776 -160703778 - AluJo SINE Alu -4 308 1 1685 217 82 45 chr6 28575776 28575893 -160703661 - MLT1E2 LTR MaLR -444 182 71 417 312 52 100 chr6 28575973 28576322 -160703232 - LTR16C LTR ERVL -62 429 98 240 216 0 0 chr6 28576567 28576618 -160702936 + MLT1K LTR MaLR 190 240 -348 485 242 26 44 chr6 28576886 28577045 -160702509 - MLT1G LTR MaLR -15 531 362 263 43 0 65 chr6 28578917 28578963 -160700591 + (GA)n Simple_repeat Simple_repeat 1 43 0 610 203 39 105 chr6 28580071 28580357 -160699197 - MER33 DNA MER1_type 0 324 58 424 122 102 51 chr6 28581378 28581476 -160698078 - AluSg/x SINE Alu -7 302 200 318 259 47 0 chr6 28581477 28581562 -160697992 + MER94 DNA DNA 36 124 -10 1829 150 0 7 chr6 28581863 28582170 -160697384 + AluSx SINE Alu 1 305 -7 1741 167 0 0 chr6 28582738 28583019 -160696535 + AluSx SINE Alu 1 281 -31 243 0 0 0 chr6 28583022 28583049 -160696505 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1169 156 9 24 chr6 28583053 28583264 -160696290 + AluJb SINE Alu 87 294 -18 870 198 6 6 chr6 28583633 28583795 -160695759 + FRAM SINE Alu 1 159 -17 263 281 0 24 chr6 28584315 28584397 -160695157 + CT-rich Low_complexity Low_complexity 4 83 0 273 29 0 0 chr6 28584979 28585013 -160694541 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1927 134 3 3 chr6 28585046 28585337 -160694217 - AluSx SINE Alu -21 291 1 1013 287 113 15 chr6 28585498 28586162 -160693392 - L2 LINE L2 -4 3309 2567 774 178 0 15 chr6 28586650 28586785 -160692769 + FLAM_C SINE Alu 1 133 0 2119 96 0 0 chr6 28588545 28588847 -160690707 - AluSx SINE Alu 0 302 1 1090 190 24 108 chr6 28590567 28591093 -160688461 - Charlie1b DNA MER1_type 0 523 42 847 182 30 66 chr6 28591099 28591297 -160688257 + AluJo SINE Alu 104 294 -18 1943 100 14 10 chr6 28591301 28591590 -160687964 + AluSq SINE Alu 1 290 -23 2903 173 27 20 chr6 28591690 28592239 -160687315 + MLT2B3 LTR ERVL 1 553 -1 850 226 49 10 chr6 28592450 28592654 -160686900 - MLT1A1 LTR MaLR 0 365 154 401 132 74 4 chr6 28592681 28592885 -160686669 + AluSx SINE Alu 1 297 -13 311 0 0 25 chr6 28592885 28592925 -160686629 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 577 255 29 39 chr6 28592926 28593130 -160686424 - L2 LINE L2 -876 2438 2237 473 265 77 88 chr6 28593223 28593574 -160685980 - MLT1J LTR MaLR -46 465 119 2731 215 34 32 chr6 28593821 28594490 -160685064 - LTR27 LTR ERV1 0 802 2 854 140 180 181 chr6 28595355 28595700 -160683854 + MER57B LTR ERV1 50 403 0 1734 125 16 46 chr6 28595993 28596298 -160683256 - AluSx SINE Alu -16 296 1 774 162 95 7 chr6 28596392 28596540 -160683014 - MER88 LTR ERVL 0 464 304 813 165 0 15 chr6 28596862 28596995 -160682559 + FLAM_C SINE Alu 2 132 -1 874 126 21 7 chr6 28597735 28597878 -160681676 + MER4E LTR ERV1 630 774 -5 351 136 0 0 chr6 28598318 28598377 -160681177 + (TTC)n Simple_repeat Simple_repeat 1 59 0 632 120 162 34 chr6 28598467 28598584 -160680970 - FLAM_C SINE Alu -11 132 1 284 233 0 55 chr6 28601121 28601194 -160678360 - MER63 DNA MER1_type -3 1059 991 330 209 0 0 chr6 28601196 28601263 -160678291 - MER63 DNA MER1_type -97 739 673 2158 103 3 0 chr6 28601332 28601622 -160677932 - AluSp SINE Alu -22 291 1 207 0 0 0 chr6 28602056 28602079 -160677475 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 309 278 72 0 chr6 28602079 28602176 -160677378 - MIR SINE MIR -67 141 38 811 271 88 51 chr6 28602509 28602878 -160676676 + LTR16A LTR ERVL 5 400 -50 353 190 140 70 chr6 28602904 28602967 -160676587 + Charlie1 DNA MER1_type 1 75 -1380 1993 102 67 0 chr6 28602967 28603250 -160676304 - AluSx SINE Alu -10 302 1 353 190 140 70 chr6 28603250 28603286 -160676268 + Charlie1 DNA MER1_type 75 107 -1348 1824 148 0 10 chr6 28603287 28603585 -160675969 + AluJb SINE Alu 1 295 -17 496 126 0 46 chr6 28603585 28603672 -160675882 + AluJo SINE Alu 52 134 -178 588 165 45 30 chr6 28603685 28603818 -160675736 + Charlie1 DNA MER1_type 100 234 -2527 1817 138 24 3 chr6 28603831 28604122 -160675432 + AluSx SINE Alu 1 297 -15 1669 181 0 3 chr6 28604126 28604425 -160675129 - AluJb SINE Alu -14 298 1 690 192 8 0 chr6 28604425 28604550 -160675004 + Charlie1 DNA MER1_type 2636 2761 0 1552 186 23 75 chr6 28604672 28604755 -160674799 + L1M4 LINE L1 7 93 -6449 2105 104 3 3 chr6 28604755 28605052 -160674502 + AluSp SINE Alu 1 297 -16 1552 186 23 75 chr6 28605052 28605355 -160674199 + L1M4 LINE L1 93 373 -6169 889 244 96 96 chr6 28605355 28605930 -160673624 - MER34C LTR ERV1 0 585 11 1635 214 17 53 chr6 28605940 28606295 -160673259 + L1M4 LINE L1 370 711 -5831 183 42 0 0 chr6 28606748 28606772 -160672782 + (GA)n Simple_repeat Simple_repeat 1 24 0 197 277 30 89 chr6 28607494 28607524 -160672030 + MIR3 SINE MIR 78 108 -100 1853 163 41 30 chr6 28607524 28607893 -160671661 - THE1C LTR MaLR -2 373 1 197 277 30 89 chr6 28607893 28607963 -160671591 + MIR3 SINE MIR 108 172 -36 181 214 0 48 chr6 28608004 28608046 -160671508 - MIR SINE MIR -64 198 159 1108 178 15 5 chr6 28608050 28608275 -160671279 - AluJo SINE Alu 0 312 86 527 257 69 61 chr6 28608411 28608826 -160670728 - MLT1H LTR MaLR 0 549 72 201 74 0 0 chr6 28609725 28609752 -160669802 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1813 150 0 17 chr6 28609967 28610267 -160669287 + AluSx SINE Alu 1 295 -17 263 313 43 17 chr6 28610275 28610390 -160669164 - MLT1-int LTR MaLR -835 536 419 1395 233 57 20 chr6 28610502 28610854 -160668700 - MER21B LTR ERV1 -23 840 476 26 0 0 0 chr6 28610857 28610883 -160668671 + AT_rich Low_complexity Low_complexity 1 26 0 1110 211 104 123 chr6 28610902 28611100 -160668454 - MER21B LTR ERV1 -371 492 292 1330 175 183 23 chr6 28611100 28611488 -160668066 + LTR7 LTR ERV1 1 450 0 1110 211 104 123 chr6 28611488 28611791 -160667763 - MER21B LTR ERV1 -571 292 1 253 269 28 64 chr6 28611921 28612062 -160667492 - MLT1E LTR MaLR 0 593 458 888 114 0 15 chr6 28612248 28612379 -160667175 + AluJ SINE Alu 5 133 -169 1336 131 5 22 chr6 28612379 28612539 -160667015 + AluSg/x SINE Alu 86 242 -70 3963 109 24 2 chr6 28612539 28613091 -160666463 - LTR6A LTR ERV1 0 564 1 1336 131 5 22 chr6 28613091 28613152 -160666402 + AluSg/x SINE Alu 242 303 -9 689 180 158 0 chr6 28613153 28613292 -160666262 + AluJ SINE Alu 136 296 -16 2039 116 0 0 chr6 28614173 28614467 -160665087 + AluSx SINE Alu 1 294 -18 1250 217 125 21 chr6 28614509 28614812 -160664742 + MER90 LTR ERV1 1 408 -206 1680 164 31 0 chr6 28614812 28615105 -160664449 + AluJb SINE Alu 1 302 -10 1250 217 125 21 chr6 28615105 28615242 -160664312 + MER90 LTR ERV1 408 529 -85 634 152 9 9 chr6 28616790 28616895 -160662659 + FLAM_A SINE Alu 4 108 -34 235 249 29 10 chr6 28617006 28617074 -160662480 + MER5A DNA MER1_type 60 116 -62 499 263 157 59 chr6 28617078 28617607 -160661947 + HAL1 LINE L1 1891 2471 -36 1979 125 21 0 chr6 28617733 28618021 -160661533 + AluSx SINE Alu 1 294 -18 233 189 53 105 chr6 28618026 28618121 -160661433 - L2 LINE L2 -1342 1972 1883 2013 123 7 3 chr6 28619125 28619426 -160660128 + AluSx SINE Alu 1 302 -10 225 250 17 33 chr6 28619698 28619758 -160659796 - L2 LINE L2 -568 2746 2688 228 235 82 12 chr6 28619936 28620021 -160659533 + L1P LINE L1 5317 5407 -747 21 0 0 0 chr6 28620034 28620055 -160659499 + AT_rich Low_complexity Low_complexity 1 21 0 1997 115 3 11 chr6 28620189 28620498 -160659056 + AluSx SINE Alu 1 307 0 240 261 134 63 chr6 28620499 28620641 -160658913 + L1ME4a LINE L1 5605 5756 -365 338 240 113 60 chr6 28620696 28620846 -160658708 + L1ME4a LINE L1 5933 6090 -31 512 210 72 83 chr6 28621099 28621280 -160658274 - MIR SINE MIR 0 262 84 2053 89 7 0 chr6 28621870 28622173 -160657381 + AluSg SINE Alu 1 305 0 2227 136 59 15 chr6 28623286 28623677 -160655877 - MER83 LTR ERV1 0 448 41 244 284 154 24 chr6 28623805 28623974 -160655580 - L1ME LINE L1 -236 5885 5695 714 195 47 7 chr6 28624289 28624438 -160655116 + FRAM SINE Alu 11 165 -11 1635 135 76 17 chr6 28624441 28624730 -160654824 + AluSx SINE Alu 5 310 -2 312 110 27 14 chr6 28624848 28624921 -160654633 + (TA)n Simple_repeat Simple_repeat 2 75 0 1597 162 87 0 chr6 28625734 28626000 -160653554 - AluJo SINE Alu -23 289 1 1871 163 0 14 chr6 28626665 28626959 -160652595 - AluSx SINE Alu -20 292 3 2386 73 0 20 chr6 28627072 28627374 -160652180 + AluY SINE Alu 1 296 -15 2206 121 0 0 chr6 28628174 28628463 -160651091 + AluSx SINE Alu 1 289 -23 1875 138 14 10 chr6 28628676 28628967 -160650587 + AluSx SINE Alu 1 292 -20 2276 110 37 103 chr6 28631906 28631976 -160647578 - MSTA LTR MaLR -2 426 353 2447 91 0 0 chr6 28631976 28632283 -160647271 + AluSg SINE Alu 1 307 -3 2276 110 37 103 chr6 28632283 28632526 -160647028 - MSTA LTR MaLR -75 353 150 2199 82 14 24 chr6 28632526 28632820 -160646734 + AluSx SINE Alu 1 291 -21 2276 110 37 103 chr6 28632820 28632961 -160646593 - MSTA LTR MaLR -278 150 1 827 226 0 18 chr6 28633175 28633339 -160646215 + MER21B LTR ERV1 332 492 -371 23 0 0 0 chr6 28633942 28633965 -160645589 + AT_rich Low_complexity Low_complexity 1 23 0 1918 143 0 7 chr6 28634261 28634582 -160644972 + AluSx SINE Alu 1 319 0 255 265 133 0 chr6 28635279 28635377 -160644177 - L1ME4a LINE L1 -76 6045 5935 318 127 42 0 chr6 28635390 28635461 -160644093 + (TA)n Simple_repeat Simple_repeat 2 75 0 222 210 310 10 chr6 28635602 28635702 -160643852 + MER5A DNA MER1_type 55 184 -5 2246 111 7 0 chr6 28635792 28636098 -160643456 + AluSx SINE Alu 2 309 -3 497 314 66 22 chr6 28636164 28636390 -160643164 - MIR SINE MIR -7 255 20 761 329 81 7 chr6 28636810 28637266 -160642288 + L2 LINE L2 2203 2692 -622 516 81 0 0 chr6 28637269 28637343 -160642211 + (GTTTG)n Simple_repeat Simple_repeat 2 75 0 2358 101 0 0 chr6 28637359 28637667 -160641887 + AluSc SINE Alu 1 308 -1 245 125 0 0 chr6 28637681 28637713 -160641841 - Alu SINE Alu -20 282 251 974 105 0 0 chr6 28637723 28637856 -160641698 - FLAM_C SINE Alu 0 133 1 415 267 149 76 chr6 28637856 28638419 -160641135 + L2 LINE L2 2687 3296 -17 475 120 0 0 chr6 28638629 28638704 -160640850 + MER53 DNA DNA 107 181 -8 261 180 0 0 chr6 28638987 28639037 -160640517 + MLT1I LTR MaLR 91 140 -269 310 253 0 0 chr6 28639184 28639271 -160640283 + G-rich Low_complexity Low_complexity 1 87 0 2027 96 11 21 chr6 28639271 28639552 -160640002 - AluSq SINE Alu -35 278 1 2129 112 0 33 chr6 28639580 28639884 -160639670 - AluSq SINE Alu -19 294 1 542 235 142 27 chr6 28639908 28640091 -160639463 + AluJo SINE Alu 85 288 -24 38 22 0 0 chr6 28640251 28640296 -160639258 + AT_rich Low_complexity Low_complexity 1 45 0 2263 87 0 3 chr6 28640306 28640594 -160638960 + AluSq SINE Alu 2 288 -25 693 120 0 10 chr6 28640594 28640694 -160638860 - U6 snRNA snRNA -8 99 1 520 206 7 73 chr6 28640730 28640866 -160638688 + L2 LINE L2 3183 3309 -4 1339 108 5 18 chr6 28641013 28641235 -160638319 - L1MA8 LINE L1 -3 6288 6070 184 292 92 0 chr6 28641238 28641303 -160638251 - MER5A DNA MER1_type -77 112 42 262 314 0 67 chr6 28641394 28641499 -160638055 - MIR SINE MIR -84 124 27 270 176 0 0 chr6 28641687 28641738 -160637816 - L1ME3A LINE L1 0 6170 6120 298 107 18 62 chr6 28642052 28642164 -160637390 + (CCCCG)n Simple_repeat Simple_repeat 2 108 0 739 0 0 0 chr6 28642443 28642526 -160637028 + tRNA-Leu-CTG tRNA tRNA 1 83 -3 15641 158 69 43 chr6 28642953 28646593 -160632961 - MER109 Unknown Unknown 0 2432 -1114 2373 100 0 0 chr6 28646593 28646893 -160632661 + AluSc SINE Alu 1 300 -9 15641 158 69 43 chr6 28646893 28647535 -160632019 - MER109 Unknown Unknown -3546 4294966182 150 2420 78 0 3 chr6 28647535 28647828 -160631726 + AluSc SINE Alu 1 292 -17 15641 158 69 43 chr6 28647828 28647983 -160631571 - MER109 Unknown Unknown -2281 151 1 641 297 5 14 chr6 28649646 28649858 -160629696 + MIR SINE MIR 40 249 -13 209 135 19 0 chr6 28649925 28649977 -160629577 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1289 246 133 21 chr6 28649984 28650344 -160629210 - MLT2B1 LTR ERVL -45 475 58 1859 140 0 31 chr6 28650344 28650636 -160628918 - AluJo SINE Alu -29 283 1 1289 246 133 21 chr6 28650636 28650702 -160628852 - MLT2B1 LTR ERVL -462 58 1 345 269 39 0 chr6 28650702 28650806 -160628748 - L2 LINE L2 -32 3240 3133 198 299 42 90 chr6 28651108 28651252 -160628302 + L2 LINE L2 2915 3051 -221 1195 176 18 40 chr6 28651311 28651538 -160628016 - AluJb SINE Alu -90 222 1 1513 179 3 48 chr6 28651573 28651886 -160627668 + AluJo SINE Alu 1 299 -13 2164 89 7 0 chr6 28651899 28652201 -160627353 + AluSx SINE Alu 1 304 0 2480 93 0 0 chr6 28652823 28653135 -160626419 + AluSx SINE Alu 1 312 0 679 0 0 0 chr6 28654152 28654226 -160625328 - tRNA-Thr-ACT tRNA tRNA -3 74 1 240 35 0 0 chr6 28654972 28654980 -160624574 + (TG)n Simple_repeat Simple_repeat 1 37 0 240 35 0 0 chr6 28654980 28655009 -160624545 + (TG)n Simple_repeat Simple_repeat 2 30 0 2612 43 0 3 chr6 28655432 28655734 -160623820 + AluY SINE Alu 1 301 -10 1483 158 78 14 chr6 28656291 28656575 -160622979 + MLT2C1 LTR ERVL 10 311 -86 2142 73 59 7 chr6 28656712 28656999 -160622555 - AluSq SINE Alu -11 302 1 1836 60 5 0 chr6 28657190 28657407 -160622147 + AluSp SINE Alu 85 302 -11 505 212 29 51 chr6 28657408 28657545 -160622009 + Charlie4 DNA MER1_type 1811 1944 -17 654 14 0 0 chr6 28658733 28658806 -160620748 + tRNA-Arg-CGC tRNA tRNA 1 73 -3 686 0 0 0 chr6 28659289 28659363 -160620191 + tRNA-Val-GTG tRNA tRNA 1 74 -2 2057 113 44 3 chr6 28660513 28660806 -160618748 - AluSx SINE Alu -7 305 1 258 105 0 0 chr6 28660870 28660908 -160618646 + (A)n Simple_repeat Simple_repeat 1 38 0 2374 105 3 0 chr6 28661564 28661868 -160617686 - AluSx SINE Alu -6 306 2 2105 91 51 0 chr6 28662291 28662566 -160616988 - AluSg SINE Alu -21 289 1 1588 151 26 4 chr6 28662597 28662869 -160616685 - MLT1B LTR MaLR 0 390 113 1525 159 28 40 chr6 28663438 28663765 -160615789 - L1MC2 LINE L1 -10 6334 6012 887 83 0 0 chr6 28664657 28664766 -160614788 - AluSg/x SINE Alu -12 297 189 2056 75 0 30 chr6 28664766 28665031 -160614523 + AluSx SINE Alu 53 309 -3 400 308 60 44 chr6 28665443 28666370 -160613184 - L1ME4a LINE L1 -96 6025 5083 1373 254 78 80 chr6 28667490 28668431 -160611123 - L1ME4a LINE L1 -1055 5091 4153 2380 92 3 0 chr6 28668465 28668771 -160610783 - AluSx SINE Alu -5 307 1 1893 105 37 54 chr6 28668782 28669076 -160610478 - AluSx SINE Alu -21 291 3 181 247 240 19 chr6 28669077 28669231 -160610323 - L2 LINE L2 -563 2751 2564 188 333 83 0 chr6 28669265 28669373 -160610181 + MIR SINE MIR 90 206 -56 2361 90 0 10 chr6 28669792 28670102 -160609452 + AluSx SINE Alu 1 307 -5 261 299 34 8 chr6 28670200 28670317 -160609237 - L2 LINE L2 -219 3053 2934 2284 87 6 13 chr6 28670649 28670961 -160608593 - AluSq SINE Alu -3 310 1 3348 113 84 6 chr6 28671097 28671611 -160607943 - MER41C LTR ERV1 0 554 1 619 71 0 12 chr6 28671638 28671722 -160607832 + AluSg/x SINE Alu 218 300 -12 1201 224 75 35 chr6 28672123 28672415 -160607139 - Charlie4a DNA MER1_type -1456 505 191 2325 75 20 0 chr6 28672415 28672709 -160606845 - AluY SINE Alu -11 300 1 1201 224 75 35 chr6 28672709 28672814 -160606740 - Charlie4a DNA MER1_type -1770 191 92 441 266 71 7 chr6 28672813 28672967 -160606587 - MER112 DNA MER1_type -96 164 1 * 1192 163 92 0 chr6 28673329 28673568 -160605986 + Tigger7 DNA MER2_type 7 267 -466 555 129 75 11 chr6 28673566 28673659 -160605895 + Tigger7 DNA MER2_type 2389 2487 0 * 398 200 0 0 chr6 28673711 28673781 -160605773 - tRNA-Lys-AAA tRNA tRNA -1 75 6 584 81 11 0 chr6 28674001 28674088 -160605466 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 639 14 0 0 chr6 28674738 28674810 -160604744 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 668 0 0 0 chr6 28675357 28675431 -160604123 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 258 304 43 22 chr6 28676179 28676271 -160603283 - MER5A DNA MER1_type -40 149 56 203 295 57 38 chr6 28676183 28676288 -160603266 + MER5A DNA MER1_type 55 161 -28 * 643 0 0 0 chr6 28676505 28676577 -160602977 + tRNA-Pro-CCT tRNA tRNA 1 72 -3 252 77 0 0 chr6 28676721 28676760 -160602794 + (T)n Simple_repeat Simple_repeat 1 39 0 665 0 0 0 chr6 28677781 28677855 -160601699 + tRNA-Lys-AAG tRNA tRNA 1 74 -2 223 264 0 0 chr6 28678364 28678417 -160601137 + MER5B DNA MER1_type 17 69 -109 941 266 169 3 chr6 28678631 28679003 -160600551 - L2 LINE L2 -432 2882 2449 664 157 45 15 chr6 28679318 28679452 -160600102 - FLAM_C SINE Alu -1 142 5 1967 154 0 0 chr6 28679609 28679907 -160599647 + AluJb SINE Alu 1 298 -14 435 139 28 0 chr6 28680188 28680260 -160599294 + U3 snRNA snRNA 1 74 -143 1934 125 0 77 chr6 28680376 28680689 -160598865 + AluJo SINE Alu 1 289 -23 2655 23 7 3 chr6 28680696 28681000 -160598554 + AluY SINE Alu 1 305 -6 2310 108 7 0 chr6 28681097 28681394 -160598160 + AluSq SINE Alu 1 299 -14 2030 130 32 0 chr6 28681401 28681686 -160597868 + AluSx SINE Alu 2 295 -17 259 277 64 0 chr6 28681788 28681882 -160597672 + L1MC5 LINE L1 7269 7368 -593 426 275 72 72 chr6 28681939 28682372 -160597182 + L1MC4 LINE L1 7610 8042 0 1206 146 150 5 chr6 28682705 28682925 -160596629 + AluSq SINE Alu 1 252 -61 1948 234 4 37 chr6 28682925 28683383 -160596171 - LTR2 LTR ERV1 0 449 7 228 163 0 0 chr6 28683420 28683463 -160596091 + A-rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr6 28684127 28684149 -160595405 + AT_rich Low_complexity Low_complexity 1 22 0 1258 162 27 18 chr6 28684423 28684645 -160594909 + THE1C LTR MaLR 1 224 -151 1288 132 0 64 chr6 28685025 28685115 -160594439 - AluJb SINE Alu -17 295 201 2332 97 102 0 chr6 28685115 28685457 -160594097 + MER51B LTR ERV1 1 377 0 1288 132 0 64 chr6 28685457 28685585 -160593969 - AluJb SINE Alu -111 201 91 2279 83 0 10 chr6 28685585 28685875 -160593679 + AluSg SINE Alu 9 295 -15 818 136 8 205 chr6 28685913 28686171 -160593383 + AluJo SINE Alu 87 293 -19 186 216 0 0 chr6 28687010 28687047 -160592507 + L2 LINE L2 3236 3272 0 2309 40 29 0 chr6 28687107 28687416 -160592138 - AluY SINE Alu 0 319 3 748 202 5 94 chr6 28687595 28687798 -160591756 - MER20 DNA MER1_type -18 201 17 1663 144 3 30 chr6 28687848 28688147 -160591407 - AluJo SINE Alu -21 291 1 829 199 110 16 chr6 28688242 28688488 -160591066 + LTR37B LTR ERV1 199 467 -1 1974 121 9 19 chr6 28688824 28689139 -160590415 - AluSx SINE Alu 0 312 1 1955 127 3 33 chr6 28689366 28689673 -160589881 + AluSx SINE Alu 1 298 -14 501 22 0 198 chr6 28690093 28690184 -160589370 + tRNA-Tyr-TAC tRNA tRNA 1 73 -3 308 285 200 8 chr6 28690715 28690845 -160588709 + MER5B DNA MER1_type 24 178 0 2149 108 0 0 chr6 28691394 28691682 -160587872 - AluSx SINE Alu -24 288 1 252 0 0 0 chr6 28691684 28691712 -160587842 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr6 28691929 28691949 -160587605 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2289 86 6 16 chr6 28691988 28692301 -160587253 - AluSq SINE Alu -3 310 1 2136 100 36 0 chr6 28692444 28692745 -160586809 + AluSx SINE Alu 1 312 0 612 27 0 0 chr6 28693098 28693171 -160586383 - tRNA-Ala-GCA tRNA tRNA -3 73 1 2374 89 3 6 chr6 28693661 28693974 -160585580 + AluSx SINE Alu 1 312 0 187 178 0 67 chr6 28694211 28694256 -160585298 - L2 LINE L2 -22 3250 3209 2029 135 7 0 chr6 28694671 28694968 -160584586 + AluSx SINE Alu 1 299 -13 1056 150 35 55 chr6 28695356 28695556 -160583998 + AluJb SINE Alu 104 299 -13 254 108 0 0 chr6 28695592 28695629 -160583925 + LTR50 LTR ERVL 6 42 -753 1409 205 86 18 chr6 28695629 28695964 -160583590 + MLT1A2 LTR MaLR 1 358 -16 1112 206 7 136 chr6 28695964 28696303 -160583251 + MLT1A1 LTR MaLR 1 279 -86 1783 126 35 0 chr6 28696303 28696557 -160582997 - AluSx SINE Alu -20 292 30 1112 206 7 136 chr6 28696557 28696629 -160582925 + MLT1A1 LTR MaLR 279 359 -6 503 33 0 187 chr6 28696804 28696895 -160582659 + tRNA-Tyr-TAC tRNA tRNA 1 74 -2 384 271 181 16 chr6 28696990 28697178 -160582376 + LTR50 LTR ERVL 42 260 -535 499 33 0 178 chr6 28698338 28698428 -160581126 + tRNA-Tyr-TAC tRNA tRNA 1 74 -2 1418 155 66 56 chr6 28698994 28699325 -160580229 - AluJb SINE Alu 0 312 1 5480 197 14 37 chr6 28699376 28700351 -160579203 - L1PA16 LINE L1 -1 6165 5169 1945 175 0 0 chr6 28700351 28700659 -160578895 - AluSx SINE Alu -4 308 1 5480 197 14 37 chr6 28700659 28701202 -160578352 - L1PA16 LINE L1 -997 5169 4615 2278 115 0 0 chr6 28701202 28701506 -160578048 - AluSx SINE Alu -8 304 1 5480 197 14 37 chr6 28701506 28701990 -160577564 - L1PA16 LINE L1 -1551 4615 4176 2252 109 7 0 chr6 28701990 28702293 -160577261 - AluSp SINE Alu -8 305 1 5480 197 14 37 chr6 28702293 28702350 -160577204 - L1PA16 LINE L1 -1990 4176 4119 230 228 89 25 chr6 28702849 28702928 -160576626 + L2 LINE L2 1548 1631 -1683 4430 186 87 9 chr6 28702962 28703871 -160575683 + MER45B DNA AcHobo 1 980 -60 613 187 28 0 chr6 28703904 28704011 -160575543 - FLAM_A SINE Alu -32 110 1 1749 169 30 7 chr6 28704021 28704323 -160575231 - AluJb SINE Alu -3 309 1 1992 261 89 22 chr6 28704328 28705152 -160574402 + L2 LINE L2 1827 2705 -609 207 0 0 0 chr6 28705169 28705192 -160574362 + (GGGTG)n Simple_repeat Simple_repeat 5 27 0 856 314 67 20 chr6 28705198 28705599 -160573955 - LTR16C LTR ERVL -38 453 34 2075 116 22 0 chr6 28705704 28705981 -160573573 + AluSx SINE Alu 1 283 -29 227 31 31 0 chr6 28705996 28706028 -160573526 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1047 260 183 22 chr6 28756856 28757217 -160522337 + MLT1E2 LTR MaLR 205 623 -3 2333 106 3 0 chr6 28757566 28757878 -160521676 - AluSp SINE Alu 0 313 1 813 142 0 0 chr6 28758081 28758194 -160521360 + AluSq/x SINE Alu 2 114 -199 1984 118 0 0 chr6 28758391 28758662 -160520892 + AluSx SINE Alu 1 271 -41 358 357 0 28 chr6 28759897 28760079 -160519475 + (CATA)n Simple_repeat Simple_repeat 4 180 0 * 387 350 18 0 chr6 28759954 28760117 -160519437 + (CATG)n Simple_repeat Simple_repeat 1 166 0 237 224 0 0 chr6 28760120 28760178 -160519376 + (CATA)n Simple_repeat Simple_repeat 4 61 0 194 240 27 0 chr6 28760239 28760314 -160519240 + (TATG)n Simple_repeat Simple_repeat 2 78 0 330 290 10 24 chr6 28760431 28760646 -160518908 + (TATG)n Simple_repeat Simple_repeat 1 211 0 * 365 339 28 11 chr6 28760572 28760749 -160518805 + (CATG)n Simple_repeat Simple_repeat 1 180 0 444 279 0 0 chr6 28760765 28760926 -160518628 + (CATA)n Simple_repeat Simple_repeat 2 162 0 270 265 13 13 chr6 28760960 28761111 -160518443 + (CATA)n Simple_repeat Simple_repeat 3 153 0 354 280 8 33 chr6 28761177 28761422 -160518132 + (CATA)n Simple_repeat Simple_repeat 1 239 0 3597 83 91 0 chr6 28761422 28761587 -160517967 - LTR66 LTR ERVL 0 610 461 504 48 0 0 chr6 28761587 28761650 -160517904 + (TA)n Simple_repeat Simple_repeat 2 64 0 3597 83 91 0 chr6 28761650 28761980 -160517574 - LTR66 LTR ERVL -149 461 70 1583 150 86 11 chr6 28761984 28762264 -160517290 + MSTA LTR MaLR 128 428 0 682 161 25 0 chr6 28763757 28763875 -160515679 - AluSc SINE Alu -3 306 186 2400 92 3 0 chr6 28766993 28767297 -160512257 - AluSp SINE Alu -8 305 1 508 259 35 7 chr6 28767393 28767536 -160512018 + L1M4 LINE L1 3627 3773 -2373 1437 201 36 3 chr6 28767549 28767858 -160511696 + L1M4 LINE L1 4071 4389 -1757 3011 126 10 43 chr6 28767875 28768367 -160511187 + L1MC1 LINE L1 5858 6333 0 2860 252 28 53 chr6 28768367 28768854 -160510700 + L1M4 LINE L1 3785 4283 -1863 2295 103 3 0 chr6 28768854 28769155 -160510399 + AluSp SINE Alu 1 302 -11 2860 252 28 53 chr6 28769155 28769649 -160509905 + L1M4 LINE L1 4283 4737 -1409 1850 114 53 0 chr6 28769649 28769912 -160509642 + AluSg SINE Alu 1 277 -33 2860 252 28 53 chr6 28769912 28770033 -160509521 + L1M4 LINE L1 4737 4860 -1286 2432 85 0 7 chr6 28770398 28770705 -160508849 + AluSg SINE Alu 1 305 -5 995 211 11 74 chr6 28771248 28771307 -160508247 + L1M4 LINE L1 4843 4904 -1242 1830 173 3 3 chr6 28771307 28771613 -160507941 - AluJo SINE Alu -2 310 5 995 211 11 74 chr6 28771613 28771838 -160507716 + L1M4 LINE L1 4904 5109 -1037 4299 229 52 9 chr6 28771850 28772239 -160507315 - L1M4 LINE L1 -788 5358 4987 2905 136 35 11 chr6 28772239 28772702 -160506852 + MER101 LTR ERV1 1 474 0 4299 229 52 9 chr6 28772702 28773472 -160506082 - L1M4 LINE L1 -1159 4987 4150 1174 157 42 46 chr6 28773473 28773734 -160505820 - L1MC3 LINE L1 -92 7693 7434 341 24 24 0 chr6 28773754 28773795 -160505759 - tRNA-Gln-CAA tRNA tRNA -26 49 8 340 244 25 17 chr6 28773807 28773926 -160505628 - L1M4 LINE L1 -1005 5141 5022 309 278 23 75 chr6 28773951 28774124 -160505430 - MER90 LTR ERV1 -4 610 447 1611 155 25 22 chr6 28774360 28774638 -160504916 + AluJb SINE Alu 1 279 -33 1048 64 40 6 chr6 28774639 28774812 -160504742 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 25 83 0 0 chr6 28775080 28775140 -160504414 + AT_rich Low_complexity Low_complexity 1 60 0 2369 93 3 3 chr6 28775147 28775458 -160504096 - AluSp SINE Alu -1 312 2 6053 142 16 10 chr6 28775459 28776480 -160503074 - L1MC2 LINE L1 -13 6331 5305 836 66 9 0 chr6 28776491 28776597 -160502957 - AluYb8 SINE Alu -12 306 200 554 276 0 0 chr6 28776705 28776821 -160502733 - HAL1 LINE L1 -2191 316 201 23 33 0 0 chr6 28776826 28776856 -160502698 + AT_rich Low_complexity Low_complexity 1 30 0 1256 222 4 4 chr6 28776887 28777126 -160502428 - MER8 DNA MER2_type 0 239 1 1647 139 107 12 chr6 28777668 28778006 -160501548 - L1MD1 LINE L1 -8 6234 5865 2266 100 7 0 chr6 28778096 28778396 -160501158 - AluSp SINE Alu -11 302 1 2321 85 7 0 chr6 28778721 28779014 -160500540 - AluSp SINE Alu -18 295 1 1419 185 36 25 chr6 28779668 28779984 -160499570 + AluJb SINE Alu 1 319 0 940 113 7 0 chr6 28780097 28780239 -160499315 + MER4E LTR ERV1 1 143 -623 1664 158 67 0 chr6 28780618 28780902 -160498652 - AluJo SINE Alu -9 303 1 361 234 51 80 chr6 28780975 28781150 -160498404 - L1M4 LINE L1 -2859 3287 3118 751 63 0 0 chr6 28781164 28781259 -160498295 - AluSc SINE Alu -214 95 1 460 195 26 10 chr6 28787087 28787211 -160492343 + MIR SINE MIR 66 189 -65 1209 254 84 86 chr6 28787602 28788220 -160491334 + L2 LINE L2 1274 1890 -1424 1075 311 121 9 chr6 28788242 28788673 -160490881 + L2 LINE L2 2811 3289 -24 4691 158 26 66 chr6 28789420 28790430 -160489124 + LTR5 LTR ERVK 1 969 0 891 247 53 35 chr6 28790719 28791002 -160488552 + L2 LINE L2 2375 2662 -652 * 1165 304 87 28 chr6 28790981 28791454 -160488100 + L2 LINE L2 2813 3313 0 267 31 0 0 chr6 28792712 28792744 -160486810 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1649 83 32 24 chr6 28792744 28792997 -160486557 - L1PA10 LINE L1 -13 6155 5901 616 179 24 0 chr6 28793375 28793498 -160486056 + Tigger7 DNA MER2_type 2361 2486 -1 27 0 0 0 chr6 28793620 28793647 -160485907 + AT_rich Low_complexity Low_complexity 1 27 0 2245 85 3 0 chr6 28793678 28793985 -160485569 + AluSp SINE Alu 1 308 0 298 336 34 4 chr6 28794099 28794361 -160485193 + L1P LINE L1 2110 2379 -3767 490 335 105 27 chr6 28794398 28794987 -160484567 + L1MC4a LINE L1 2448 3093 -3053 351 148 0 18 chr6 28794990 28795058 -160484496 + FLAM_A SINE Alu 64 117 -16 766 177 0 0 chr6 28795066 28795179 -160484375 + FLAM_C SINE Alu 6 118 -25 798 318 63 32 chr6 28795200 28795767 -160483787 + L1MC4a LINE L1 3106 3690 -2456 1013 157 6 29 chr6 28795786 28795958 -160483596 - FRAM SINE Alu -16 160 1 774 276 92 50 chr6 28795970 28796797 -160482757 + L1MC4a LINE L1 3743 4604 -1542 752 199 129 11 chr6 28796824 28797010 -160482544 + MER58A DNA MER1_type 2 209 -15 301 344 31 14 chr6 28797180 28797474 -160482080 + L1MC4a LINE L1 4796 5094 -1052 315 0 0 0 chr6 28797529 28797545 -160482009 + (TG)n Simple_repeat Simple_repeat 1 51 0 315 0 0 0 chr6 28797545 28797580 -160481974 + (TG)n Simple_repeat Simple_repeat 2 36 0 2371 88 3 0 chr6 28797599 28797896 -160481658 - AluSp SINE Alu -10 303 6 560 177 78 35 chr6 28797919 28798157 -160481397 + L1MC4a LINE L1 5189 5428 -743 3747 220 53 41 chr6 28798168 28799157 -160480397 + L1MC/D LINE L1 3966 4942 -1204 2323 141 38 34 chr6 28799157 28799631 -160479923 + L1MA8 LINE L1 5814 6289 -2 3747 220 53 41 chr6 28799631 28799745 -160479809 + L1MC/D LINE L1 4942 5053 -1093 1754 161 3 7 chr6 28799745 28800030 -160479524 - AluSx SINE Alu -25 287 4 3747 220 53 41 chr6 28800030 28800264 -160479290 + L1MC/D LINE L1 5053 5320 -826 687 97 0 0 chr6 28800306 28800399 -160479155 + AluS SINE Alu 1 93 -219 1076 131 10 116 chr6 28800535 28800822 -160478732 + L1MC1 LINE L1 6096 6342 0 572 233 8 0 chr6 28800817 28800950 -160478604 + L1MC/D LINE L1 5423 5556 -2252 * 5361 222 99 54 chr6 28800955 28803151 -160476403 + L1MC4a LINE L1 5404 7697 -111 302 44 22 22 chr6 28803163 28803208 -160476346 + L1MC4 LINE L1 7805 7849 -193 419 202 65 48 chr6 28803209 28803333 -160476221 - MER105 DNA DNA -1 203 78 702 130 15 123 chr6 28803367 28803428 -160476126 + L1MC4 LINE L1 7863 7929 -113 1660 194 83 21 chr6 28803428 28803800 -160475754 + MSTD LTR MaLR 1 395 -1 702 130 15 123 chr6 28803800 28803953 -160475601 + L1MC4 LINE L1 7929 8042 0 364 298 187 15 chr6 28804018 28804216 -160475338 + MIR SINE MIR 31 262 0 941 257 146 28 chr6 28804769 28804785 -160474769 + L2 LINE L2 2700 2713 -600 2359 74 0 10 chr6 28804785 28805084 -160474470 + AluY SINE Alu 1 296 -15 941 257 146 28 chr6 28805084 28805499 -160474055 + L2 LINE L2 2713 3259 -54 231 368 9 19 chr6 28805612 28805718 -160473836 + L2 LINE L2 2980 3084 -188 652 295 30 15 chr6 28805916 28806116 -160473438 - MIR SINE MIR -57 205 3 721 258 140 0 chr6 28808481 28808702 -160470852 - MIR SINE MIR -3 259 8 303 300 49 114 chr6 28808875 28808925 -160470629 - L2 LINE L2 -5 3267 3215 2156 101 37 0 chr6 28808925 28809221 -160470333 + AluSp SINE Alu 1 307 -6 303 300 49 114 chr6 28809221 28809477 -160470077 - L2 LINE L2 -57 3215 2981 564 180 0 10 chr6 28809747 28809847 -160469707 + FLAM_A SINE Alu 2 100 -42 695 134 81 70 chr6 28810065 28810251 -160469303 + MER53 DNA DNA 1 188 -1 2244 120 3 0 chr6 28811380 28811689 -160467865 - AluSx SINE Alu -2 310 1 2189 113 0 0 chr6 28811689 28811979 -160467575 - AluSx SINE Alu -21 291 1 235 346 0 19 chr6 28812157 28812264 -160467290 + MIR SINE MIR 152 256 -6 1729 171 3 46 chr6 28812272 28812577 -160466977 + AluJb SINE Alu 6 297 -15 1776 165 20 3 chr6 28812587 28812884 -160466670 + MER1A DNA MER1_type 1 302 -227 1457 115 21 8 chr6 28812977 28813211 -160466343 + MER1A DNA MER1_type 297 533 0 243 231 10 58 chr6 28813300 28813404 -160466150 + T-rich Low_complexity Low_complexity 4 102 0 1719 170 87 3 chr6 28814245 28814556 -160464998 - MER1B DNA MER1_type 0 337 1 1506 211 79 67 chr6 28814570 28815064 -160464490 - MLT1D LTR MaLR 0 505 6 475 179 104 0 chr6 28815075 28815181 -160464373 + MER99 DNA DNA 709 825 -3 2617 105 11 5 chr6 28815485 28815858 -160463696 - THE1C LTR MaLR 0 375 1 234 0 0 0 chr6 28815940 28815966 -160463588 + (A)n Simple_repeat Simple_repeat 1 26 0 272 289 79 0 chr6 28816111 28816225 -160463329 + L1ME3A LINE L1 5510 5632 -538 2074 198 39 108 chr6 28816225 28816553 -160463001 - LTR8 LTR ERV1 0 691 342 1584 99 38 0 chr6 28816553 28816764 -160462790 - AluSg/x SINE Alu -9 301 83 243 0 0 0 chr6 28816770 28816797 -160462757 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2074 198 39 108 chr6 28816797 28817203 -160462351 - LTR8 LTR ERV1 -354 337 1 446 332 25 21 chr6 28817225 28817508 -160462046 + L1ME3A LINE L1 5657 5940 -230 198 167 0 0 chr6 28817508 28817544 -160462010 + (CATA)n Simple_repeat Simple_repeat 3 38 0 1070 172 25 17 chr6 28817546 28817907 -160461647 + MLT2A2 LTR ERVL 190 453 0 254 270 17 23 chr6 28817938 28818112 -160461442 + (CATA)n Simple_repeat Simple_repeat 3 175 0 195 229 24 24 chr6 28818150 28818233 -160461321 + (CATA)n Simple_repeat Simple_repeat 1 83 0 235 303 17 0 chr6 28818256 28818431 -160461123 + (CATA)n Simple_repeat Simple_repeat 2 179 0 * 243 173 0 0 chr6 28818396 28818448 -160461106 + (CATG)n Simple_repeat Simple_repeat 1 52 0 331 301 17 16 chr6 28818505 28818757 -160460797 + (CATATA)n Simple_repeat Simple_repeat 1 252 0 329 267 17 12 chr6 28818757 28818929 -160460625 + (CATA)n Simple_repeat Simple_repeat 4 176 0 289 301 78 0 chr6 28820460 28820563 -160458991 - MIR SINE MIR -108 154 44 185 94 31 0 chr6 28820828 28820860 -160458694 + (CA)n Simple_repeat Simple_repeat 2 34 0 32 26 0 0 chr6 28820863 28820902 -160458652 + AT_rich Low_complexity Low_complexity 1 39 0 530 110 0 0 chr6 28821195 28821268 -160458286 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 2067 273 81 37 chr6 28821936 28823844 -160455710 + L1MDa LINE L1 1005 3034 -3506 224 265 0 0 chr6 28824126 28824175 -160455379 + L2 LINE L2 3220 3268 -4 1571 168 32 0 chr6 28824310 28824560 -160454994 + AluSx SINE Alu 23 280 -32 342 0 0 0 chr6 28824560 28824598 -160454956 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 2191 125 0 0 chr6 28824608 28824913 -160454641 + AluSx SINE Alu 1 305 -7 220 344 32 34 chr6 28824991 28825145 -160454409 + MIR SINE MIR 3 149 -77 272 265 0 0 chr6 28825778 28825846 -160453708 + tRNA-Met-e tRNA tRNA 6 73 -2 679 60 30 0 chr6 28825968 28826068 -160453486 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 344 321 47 54 chr6 28826255 28826551 -160453003 - L2 LINE L2 -1 3312 3019 235 301 41 0 chr6 28827448 28827521 -160452033 - MIR SINE MIR -108 154 79 21 0 0 0 chr6 28828435 28828456 -160451098 + AT_rich Low_complexity Low_complexity 1 21 0 291 301 78 0 chr6 28828676 28828779 -160450775 - MIR SINE MIR -108 154 44 24 32 0 0 chr6 28828779 28828810 -160450744 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr6 28829449 28829483 -160450071 + (CA)n Simple_repeat Simple_repeat 1 34 0 194 0 39 0 chr6 28829936 28829962 -160449592 + (CA)n Simple_repeat Simple_repeat 2 28 0 25 51 0 0 chr6 28829967 28830006 -160449548 + AT_rich Low_complexity Low_complexity 1 39 0 573 96 0 0 chr6 28830301 28830374 -160449180 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 2632 255 73 52 chr6 28831042 28832966 -160446588 + L1MDa LINE L1 1005 3034 -3506 242 284 78 29 chr6 28833217 28833319 -160446235 + L2 LINE L2 3162 3268 -4 1673 180 28 0 chr6 28833440 28833723 -160445831 + AluJb SINE Alu 1 291 -21 2138 123 0 0 chr6 28833735 28834035 -160445519 + AluSx SINE Alu 1 300 -12 267 290 63 35 chr6 28834118 28834269 -160445285 + MIR3 SINE MIR 3 149 -77 405 0 0 0 chr6 28834695 28834740 -160444814 + (CA)n Simple_repeat Simple_repeat 2 46 0 553 110 0 0 chr6 28835076 28835149 -160444405 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 264 152 65 0 chr6 28837162 28837208 -160442346 + MER66A LTR ERV1 289 337 -141 246 147 147 15 chr6 28837809 28837877 -160441677 + L2 LINE L2 3236 3312 -1 319 194 48 0 chr6 28838508 28838570 -160440984 - tRNA-His-CAC tRNA tRNA -10 65 1 290 336 154 5 chr6 28838955 28839169 -160440385 - L2 LINE L2 -103 3210 2965 23 0 0 0 chr6 28840477 28840500 -160439054 + AT_rich Low_complexity Low_complexity 1 23 0 15731 161 41 34 chr6 28840922 28845289 -160434265 + L1MA8 LINE L1 3314 7707 -3 381 263 0 0 chr6 28845347 28845423 -160434131 + tRNA-Val-GTT tRNA tRNA 1 76 0 313 158 0 0 chr6 28845875 28845932 -160433622 + tRNA-Ala-GCA tRNA tRNA 4 60 -16 1298 133 98 8 chr6 28846455 28846710 -160432844 + L1MB4 LINE L1 5903 6180 0 203 157 20 0 chr6 28847613 28847664 -160431890 + (TA)n Simple_repeat Simple_repeat 2 53 0 618 304 33 0 chr6 28847806 28848076 -160431478 + L1M4 LINE L1 2380 2658 -3488 245 297 16 0 chr6 28848315 28848379 -160431175 + L2 LINE L2 3204 3268 -4 478 135 14 0 chr6 28849307 28849381 -160430173 + tRNA-Met-e tRNA tRNA 1 75 0 245 244 165 35 chr6 28849699 28849814 -160429740 - L2 LINE L2 -1 3312 3183 350 0 44 0 chr6 28850491 28850536 -160429018 + (TAAAA)n Simple_repeat Simple_repeat 1 47 0 180 0 0 0 chr6 28850652 28850672 -160428882 + (T)n Simple_repeat Simple_repeat 1 20 0 261 0 0 0 chr6 28852337 28852366 -160427188 + (CA)n Simple_repeat Simple_repeat 1 29 0 354 23 0 0 chr6 28852818 28852861 -160426693 + (CA)n Simple_repeat Simple_repeat 2 44 0 553 110 0 0 chr6 28853198 28853271 -160426283 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 2553 268 81 45 chr6 28853824 28855870 -160423684 + L1MDb LINE L1 791 2913 -3493 259 289 82 10 chr6 28856118 28856215 -160423339 + L2 LINE L2 3168 3271 -1 1565 163 0 4 chr6 28856333 28856584 -160422970 + AluSx SINE Alu 1 250 -62 515 56 14 0 chr6 28856607 28856678 -160422876 + (TAAAA)n Simple_repeat Simple_repeat 1 72 0 2074 97 41 17 chr6 28856693 28856983 -160422571 + AluSx SINE Alu 1 297 -15 198 0 0 0 chr6 28857180 28857202 -160422352 + (A)n Simple_repeat Simple_repeat 1 22 0 1902 120 0 13 chr6 28857208 28857507 -160422047 + AluY SINE Alu 1 295 -16 849 305 27 54 chr6 28857841 28858185 -160421369 + HAL1 LINE L1 461 793 -1714 1925 132 0 17 chr6 28858185 28858506 -160421048 - AluSx SINE Alu 0 316 1 849 305 27 54 chr6 28858506 28858603 -160420951 + HAL1 LINE L1 793 891 -1616 381 226 137 11 chr6 28858676 28858866 -160420688 + HAL1 LINE L1 1050 1263 -1244 1565 163 0 4 chr6 28859007 28859258 -160420296 + AluSx SINE Alu 1 250 -62 515 56 14 0 chr6 28859281 28859352 -160420202 + (TAAAA)n Simple_repeat Simple_repeat 1 72 0 2047 100 41 17 chr6 28859367 28859657 -160419897 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr6 28859854 28859877 -160419677 + (A)n Simple_repeat Simple_repeat 1 23 0 2348 66 0 10 chr6 28859882 28860187 -160419367 + AluY SINE Alu 1 302 -9 285 265 0 0 chr6 28860872 28860940 -160418614 + tRNA-Met-e tRNA tRNA 6 73 -2 826 143 12 0 chr6 28861071 28861232 -160418322 + CT-rich Low_complexity Low_complexity 2 164 0 272 274 41 0 chr6 28862598 28862671 -160416883 - MIR SINE MIR -108 154 79 378 0 0 0 chr6 28863358 28863400 -160416154 + (CA)n Simple_repeat Simple_repeat 2 43 0 458 164 0 0 chr6 28864158 28864231 -160415323 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 2580 254 121 42 chr6 28864811 28866302 -160413252 + L1ME LINE L1 783 2421 -3985 2101 122 0 3 chr6 28866302 28866597 -160412957 + AluSq SINE Alu 1 294 -19 2580 254 121 42 chr6 28866597 28867120 -160412434 + L1ME LINE L1 2421 2902 -3504 255 294 0 0 chr6 28867383 28867451 -160412103 + L2 LINE L2 3204 3271 -1 275 286 0 0 chr6 28868396 28868459 -160411095 + tRNA-Met-e tRNA tRNA 11 73 -2 277 353 25 47 chr6 28868805 28869040 -160410514 - L2 LINE L2 0 3313 3084 687 13 0 0 chr6 28871480 28871555 -160407999 - tRNA-Ile-ATT tRNA tRNA -2 75 1 248 186 0 0 chr6 28872963 28873006 -160406548 - tRNA-His-CAC tRNA tRNA -23 52 10 1188 101 10 10 chr6 28873023 28873221 -160406333 + LTR1 LTR ERV1 54 251 -534 181 297 135 27 chr6 28873736 28873810 -160405744 + MIR SINE MIR 60 141 -67 232 100 0 75 chr6 28873821 28873861 -160405693 + Charlie7 DNA MER1_type 1627 1663 -949 2659 42 0 6 chr6 28874169 28874482 -160405072 + AluY SINE Alu 1 311 0 267 318 45 26 chr6 28874565 28874719 -160404835 + MER110 LTR ERV1 320 476 -15 664 376 55 16 chr6 28875833 28876344 -160403210 + ERVL LTR ERVL 2547 3077 -2687 3828 234 68 70 chr6 28876357 28878056 -160401498 + L1ME LINE L1 4002 5690 -734 485 151 0 0 chr6 28878530 28878603 -160400951 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 524 82 0 0 chr6 28880363 28880436 -160399118 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 616 87 0 19 chr6 28881144 28881247 -160398307 + (TTC)n Simple_repeat Simple_repeat 2 102 0 431 282 22 47 chr6 28881648 28881862 -160397692 + L1MC5 LINE L1 7258 7465 -496 1486 157 20 49 chr6 28881862 28882168 -160397386 + L1MC2 LINE L1 6048 6344 0 431 282 22 47 chr6 28882168 28882230 -160397324 + L1MC5 LINE L1 7465 7527 -434 1681 77 122 28 chr6 28882954 28883201 -160396353 + AluSx SINE Alu 40 309 -3 183 80 0 0 chr6 28884150 28884175 -160395379 + (TTTC)n Simple_repeat Simple_repeat 1 25 0 450 113 14 0 chr6 28885203 28885274 -160394280 - tRNA-Met-e tRNA tRNA -3 72 1 219 132 0 0 chr6 28885558 28885596 -160393958 + L2 LINE L2 3234 3271 -1 180 0 0 0 chr6 28885785 28885805 -160393749 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 250 241 188 18 chr6 28885820 28885932 -160393622 - MIR SINE MIR -109 153 23 185 231 0 19 chr6 28886032 28886084 -160393470 - L2 LINE L2 -5 3267 3217 918 170 143 30 chr6 28886380 28886610 -160392944 - MLT1B LTR MaLR 0 390 135 340 102 20 0 chr6 28886961 28887010 -160392544 + MSTB1 LTR MaLR 380 429 -3 1586 150 86 11 chr6 28888110 28888390 -160391164 - MSTA LTR MaLR 0 428 128 2775 82 3 0 chr6 28888394 28888747 -160390807 + LTR66 LTR ERVL 70 423 -187 1750 141 0 0 chr6 28888747 28889018 -160390536 + AluSx SINE Alu 36 306 0 1183 62 41 88 chr6 28889149 28889343 -160390211 + LTR66 LTR ERVL 426 610 0 290 239 12 43 chr6 28889427 28889590 -160389964 + (TATG)n Simple_repeat Simple_repeat 2 159 0 219 280 13 13 chr6 28889655 28889805 -160389749 + (TATG)n Simple_repeat Simple_repeat 3 152 0 189 171 0 0 chr6 28889897 28889932 -160389622 + (CATG)n Simple_repeat Simple_repeat 1 35 0 311 344 31 12 chr6 28889966 28890126 -160389428 + (CATG)n Simple_repeat Simple_repeat 2 164 0 460 291 17 23 chr6 28890151 28890326 -160389228 + (CATA)n Simple_repeat Simple_repeat 2 175 0 249 261 0 0 chr6 28890394 28890482 -160389072 + (CATA)n Simple_repeat Simple_repeat 4 91 0 358 358 6 11 chr6 28890542 28890718 -160388836 + (TATG)n Simple_repeat Simple_repeat 3 177 0 * 385 350 18 0 chr6 28890603 28890766 -160388788 + (CATG)n Simple_repeat Simple_repeat 3 168 0 339 363 0 0 chr6 28890710 28890834 -160388720 + (TATATG)n Simple_repeat Simple_repeat 3 126 0 * 985 157 143 30 chr6 28891753 28891983 -160387571 + MLT1B LTR MaLR 135 390 0 243 298 177 11 chr6 28892433 28892560 -160386994 + MIR SINE MIR 23 128 -134 225 0 0 0 chr6 28892560 28892585 -160386969 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 243 298 177 11 chr6 28892585 28892638 -160386916 + MIR SINE MIR 128 233 -29 205 158 0 0 chr6 28892773 28892811 -160386743 - L2 LINE L2 -1 3271 3234 450 113 14 0 chr6 28893095 28893166 -160386388 + tRNA-Met-e tRNA tRNA 1 72 -3 5903 130 30 15 chr6 28894505 28895459 -160384095 + LTR5 LTR ERVK 1 969 0 1525 106 5 32 chr6 28896182 28896400 -160383154 - AluSx SINE Alu -61 251 40 444 278 22 47 chr6 28897122 28897184 -160382370 - L1MC5 LINE L1 -434 7527 7465 1508 154 20 46 chr6 28897184 28897489 -160382065 - L1MC2 LINE L1 0 6344 6048 444 278 22 47 chr6 28897489 28897703 -160381851 - L1MC5 LINE L1 -496 7465 7258 211 218 0 18 chr6 28897789 28897844 -160381710 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 1126 56 6 6 chr6 28898100 28898260 -160381294 + (GAA)n Simple_repeat Simple_repeat 2 161 0 191 323 0 0 chr6 28898611 28898673 -160380881 - L2 LINE L2 -84 3229 3168 492 110 0 0 chr6 28899005 28899078 -160380476 - tRNA-Ala-GCA tRNA tRNA -3 73 1 429 178 0 0 chr6 28899717 28899790 -160379764 - tRNA-Ala-GCA tRNA tRNA -3 73 1 3821 243 69 55 chr6 28900269 28901941 -160377613 - L1ME LINE L1 -734 5430 3742 671 373 55 16 chr6 28901954 28902466 -160377088 - ERVL LTR ERVL -2687 3077 2546 205 339 107 18 chr6 28904091 28904203 -160375351 - MIR3 SINE MIR -27 181 60 1262 101 10 10 chr6 28904699 28904897 -160374657 - LTR1 LTR ERV1 -534 251 54 251 139 0 0 chr6 28904921 28904957 -160374597 + tRNA-His-CAC tRNA tRNA 17 52 -23 623 40 0 0 chr6 28906358 28906433 -160373121 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 8116 10 0 0 chr6 28906511 28907765 -160371789 + L1PA2 LINE L1 4902 6155 0 1745 254 28 18 chr6 28960287 28960787 -160318767 + MLT1D LTR MaLR 1 505 0 2388 85 0 0 chr6 28960967 28961273 -160318281 - AluSx SINE Alu -6 306 1 215 210 32 16 chr6 28961675 28961737 -160317817 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 7378 12 0 0 chr6 28961805 28962641 -160316913 - L1PA2 LINE L1 -2 6153 5318 29 84 0 0 chr6 28963371 28963442 -160316112 + AT_rich Low_complexity Low_complexity 1 71 0 468 322 9 57 chr6 28964152 28964363 -160315191 + MIR SINE MIR 2 202 -60 183 129 0 0 chr6 28964410 28964441 -160315113 + (GA)n Simple_repeat Simple_repeat 2 32 0 244 292 0 0 chr6 28964559 28964624 -160314930 - LTR16A1 LTR ERVL -2 455 391 1987 198 31 8 chr6 28965707 28966091 -160313463 - MSTD LTR MaLR -3 393 1 622 143 0 42 chr6 28966833 28966952 -160312602 + L1PA14 LINE L1 6044 6157 -4 47 53 0 0 chr6 28967028 28967103 -160312451 + AT_rich Low_complexity Low_complexity 1 75 0 33 25 0 0 chr6 28967312 28967352 -160312202 + AT_rich Low_complexity Low_complexity 1 40 0 27 49 0 0 chr6 28968323 28968364 -160311190 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr6 28968435 28968455 -160311099 + (CA)n Simple_repeat Simple_repeat 2 21 0 1857 218 31 0 chr6 28968600 28968958 -160310596 + MLT2B3 LTR ERVL 133 501 -53 240 35 0 0 chr6 28968965 28968994 -160310560 + (TC)n Simple_repeat Simple_repeat 2 30 0 225 154 0 0 chr6 28968995 28969034 -160310520 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 25 31 0 0 chr6 28969218 28969250 -160310304 + AT_rich Low_complexity Low_complexity 1 32 0 364 203 0 0 chr6 28969594 28969658 -160309896 - U4 snRNA snRNA -81 64 1 25 31 0 0 chr6 28969728 28969760 -160309794 + AT_rich Low_complexity Low_complexity 1 32 0 231 114 0 0 chr6 28971891 28971926 -160307628 + (TG)n Simple_repeat Simple_repeat 2 36 0 670 333 108 8 chr6 28971981 28972332 -160307222 - LTR16B LTR ERVL -31 433 48 1008 207 42 93 chr6 28972455 28972840 -160306714 + MLT1A1 LTR MaLR 1 428 0 1349 184 4 50 chr6 28972944 28973335 -160306219 - L1M LINE L1 -740 5428 5067 * 3927 195 26 32 chr6 28973318 28974230 -160305324 + L1MA10 LINE L1 5420 6326 -8 190 319 78 58 chr6 28974435 28974626 -160304928 - L3 LINE CR1 -10 1567 1373 25 51 0 0 chr6 28974961 28975000 -160304554 + AT_rich Low_complexity Low_complexity 1 39 0 248 273 0 0 chr6 28975106 28975161 -160304393 - MLT1I LTR MaLR 0 409 355 283 316 38 23 chr6 28975292 28975425 -160304129 - MLT1I LTR MaLR -270 139 5 290 352 66 28 chr6 28975428 28975641 -160303913 - L3 LINE CR1 -921 656 436 1596 137 30 58 chr6 28975723 28976052 -160303502 - MER44D DNA MER2_type -12 597 8 352 302 39 8 chr6 28976128 28976257 -160303297 + MIR SINE MIR 81 213 -49 318 350 50 17 chr6 28976317 28976577 -160302977 - L1MC4a LINE L1 -303 5818 5637 23 33 0 0 chr6 28976778 28976808 -160302746 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 28976893 28976921 -160302633 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 28977216 28977245 -160302309 + AT_rich Low_complexity Low_complexity 1 29 0 253 253 77 0 chr6 28977301 28977392 -160302162 + MLT1I LTR MaLR 312 409 0 1798 127 0 4 chr6 28977691 28977959 -160301595 - AluSg SINE Alu -43 267 1 423 74 0 0 chr6 28977970 28978024 -160301530 - Alu SINE Alu -258 60 7 2330 76 13 7 chr6 28978424 28978728 -160300826 - AluY SINE Alu -3 308 3 2568 26 3 0 chr6 28979499 28979806 -160299748 + L1PA2 LINE L1 5846 6153 -2 1461 180 102 0 chr6 28979993 28980249 -160299305 + AluJb SINE Alu 1 282 -30 279 0 0 0 chr6 28980249 28980280 -160299274 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 1746 169 21 0 chr6 28980303 28980587 -160298967 + AluJb SINE Alu 1 290 -22 516 200 104 0 chr6 28980596 28980711 -160298843 - MER3 DNA MER1_type -61 148 22 1586 184 14 24 chr6 28980713 28980870 -160298684 - AluJb SINE Alu -21 291 137 2249 106 0 7 chr6 28980870 28981172 -160298382 - AluSg SINE Alu -10 300 1 1586 184 14 24 chr6 28981172 28981189 -160298365 - AluJb SINE Alu -175 137 2 735 169 34 0 chr6 28981189 28981307 -160298247 - FLAM_C SINE Alu -10 123 2 1826 152 3 48 chr6 28981370 28981679 -160297875 + AluSx SINE Alu 1 295 -17 2194 128 3 0 chr6 28982007 28982313 -160297241 + AluSx SINE Alu 1 307 -5 182 355 76 72 chr6 28982352 28982628 -160296926 - L2 LINE L2 -3 3269 2993 1521 167 89 3 chr6 28982634 28982916 -160296638 + AluJo SINE Alu 1 306 -6 800 161 0 8 chr6 28982921 28983051 -160296503 + FLAM_C SINE Alu 7 135 -8 1740 179 0 0 chr6 28983291 28983588 -160295966 + AluJo SINE Alu 1 297 -15 1115 163 0 30 chr6 28984128 28984331 -160295223 + AluJo SINE Alu 24 220 -92 257 163 0 20 chr6 28984331 28984380 -160295174 + FLAM SINE Alu 86 133 0 486 179 84 21 chr6 28984720 28984815 -160294739 - AluSg/x SINE Alu -14 296 196 1220 118 0 0 chr6 28984816 28984977 -160294577 + AluSg/x SINE Alu 137 297 -13 2045 141 10 19 chr6 28984989 28985302 -160294252 + AluJo SINE Alu 3 312 0 230 283 111 20 chr6 28985312 28985411 -160294143 + MER5A DNA MER1_type 74 181 -8 * 269 211 0 0 chr6 28985403 28985460 -160294094 + MIR3 SINE MIR 147 203 -5 910 102 0 0 chr6 28985618 28985736 -160293818 + FLAM_C SINE Alu 1 118 -15 2029 154 3 0 chr6 28986056 28986403 -160293151 + AluSx SINE Alu 1 348 0 1486 174 43 46 chr6 28986801 28986924 -160292630 + AluJo SINE Alu 2 124 -188 1769 121 28 35 chr6 28986924 28987214 -160292340 + AluSg SINE Alu 1 288 -22 1486 174 43 46 chr6 28987214 28987395 -160292159 + AluJo SINE Alu 124 305 -7 257 268 179 18 chr6 28987458 28987570 -160291984 - L2 LINE L2 -205 3067 2938 2081 116 7 23 chr6 28987619 28987929 -160291625 - AluSx SINE Alu -7 305 1 1580 155 37 51 chr6 28988753 28988880 -160290674 + AluJo SINE Alu 1 128 -184 2011 128 10 0 chr6 28988880 28989169 -160290385 - AluSx SINE Alu -20 292 1 1580 155 37 51 chr6 28989169 28989337 -160290217 + AluJo SINE Alu 128 292 -20 279 0 0 0 chr6 28989340 28989371 -160290183 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2326 106 0 0 chr6 28989816 28990119 -160289435 - AluSg SINE Alu -7 303 1 1856 119 0 22 chr6 28990142 28990419 -160289135 - AluSx SINE Alu -3 309 39 1557 97 32 3 chr6 28990936 28991254 -160288300 + L1P4 LINE L1 5161 5485 -676 2267 95 0 7 chr6 28991255 28991551 -160288003 + AluSx SINE Alu 2 295 -17 2066 217 135 62 chr6 28991731 28991880 -160287674 + MER82 DNA MER2_type 1 138 -515 2095 114 0 34 chr6 28991880 28992178 -160287376 + AluSx SINE Alu 1 288 -24 2066 217 135 62 chr6 28992178 28992637 -160286917 + MER82 DNA MER2_type 138 653 0 247 313 30 30 chr6 28992829 28992963 -160286591 + MLT1H LTR MaLR 29 162 -387 949 150 17 56 chr6 28993306 28993486 -160286068 - FAM SINE Alu -5 44 1 416 252 50 8 chr6 28993547 28993666 -160285888 + MLT1G1 LTR MaLR 16 139 -456 2501 118 25 6 chr6 28993765 28994122 -160285432 + THE1B LTR MaLR 1 364 0 9831 101 60 42 chr6 28994123 28995668 -160283886 + THE1B-int LTR MaLR 2 1574 -6 1322 113 49 5 chr6 28995675 28995878 -160283676 + THE1B LTR MaLR 3 214 -150 799 177 15 0 chr6 28995887 28996017 -160283537 - FLAM_C SINE Alu -1 132 1 628 157 0 0 chr6 28996019 28996121 -160283433 - AluSp/q SINE Alu -2 311 210 202 130 0 65 chr6 29000746 29000792 -160278762 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 21 0 0 0 chr6 29001342 29001363 -160278191 + AT_rich Low_complexity Low_complexity 1 21 0 271 221 154 58 chr6 29001799 29001903 -160277651 + L2 LINE L2 3104 3217 -96 1710 171 66 0 chr6 29001909 29002213 -160277341 + MER2 DNA MER2_type 1 324 -21 1334 131 91 0 chr6 29002213 29002434 -160277120 + L1MA6 LINE L1 6056 6296 -4 23 33 0 0 chr6 29002450 29002480 -160277074 + AT_rich Low_complexity Low_complexity 1 30 0 1657 199 12 93 chr6 29002717 29002761 -160276793 + MLT1A2 LTR MaLR 1 47 -327 2519 58 3 13 chr6 29002761 29003069 -160276485 + AluY SINE Alu 1 305 -6 1657 199 12 93 chr6 29003069 29003362 -160276192 + MLT1A2 LTR MaLR 47 302 -72 1976 156 30 0 chr6 29003362 29003664 -160275890 - AluSx SINE Alu -1 311 1 1657 199 12 93 chr6 29003664 29003732 -160275822 + MLT1A2 LTR MaLR 302 374 0 1075 162 81 20 chr6 29003752 29003883 -160275671 + MER3 DNA MER1_type 1 149 -60 2552 53 0 0 chr6 29003883 29004182 -160275372 - AluY SINE Alu -12 299 1 1075 162 81 20 chr6 29004182 29004247 -160275307 + MER3 DNA MER1_type 149 209 0 636 215 107 51 chr6 29004745 29004944 -160274610 - MLT1F LTR MaLR 0 626 334 1436 155 38 91 chr6 29004945 29005177 -160274377 - MLT1A1 LTR MaLR 0 365 155 2181 117 0 25 chr6 29005177 29005494 -160274060 + AluSg SINE Alu 1 309 -1 1436 155 38 91 chr6 29005494 29005602 -160273952 - MLT1A1 LTR MaLR -210 155 43 541 293 13 0 chr6 29005810 29005960 -160273594 - MLT1F LTR MaLR -400 167 16 383 375 34 21 chr6 29007187 29007478 -160272076 + L2 LINE L2 1978 2272 -1042 21 0 0 0 chr6 29007883 29007904 -160271650 + AT_rich Low_complexity Low_complexity 1 21 0 256 302 94 9 chr6 29008299 29008405 -160271149 + L2 LINE L2 3158 3272 0 298 296 0 0 chr6 29010063 29010161 -160269393 + MIR SINE MIR 90 187 -75 2065 210 17 64 chr6 29010239 29010632 -160268922 + L1M2 LINE L1 2528 2938 -3910 2241 125 0 0 chr6 29010632 29010936 -160268618 + AluSg SINE Alu 1 304 -6 2065 210 17 64 chr6 29010936 29011452 -160268102 + L1M2 LINE L1 2938 3392 -3456 2696 191 47 2 chr6 29011452 29011980 -160267574 + L1PB4 LINE L1 5604 6155 -1 3398 228 61 19 chr6 29012138 29012566 -160266988 + L1MC3 LINE L1 6150 6559 -1226 2088 164 123 5 chr6 29012566 29012949 -160266605 + MSTA LTR MaLR 1 428 0 3398 228 61 19 chr6 29012949 29013451 -160266103 + L1MC3 LINE L1 6559 7119 -666 600 229 23 34 chr6 29013515 29013690 -160265864 + MER104 DNA Tc2 7 179 -1 360 219 0 0 chr6 29014505 29014587 -160264967 + (TATATG)n Simple_repeat Simple_repeat 3 84 0 2361 61 0 10 chr6 29015081 29015377 -160264177 - AluY SINE Alu -18 293 1 588 232 7 53 chr6 29015688 29015839 -160263715 - MER20 DNA MER1_type -52 167 24 698 260 25 20 chr6 29016204 29016408 -160263146 + MER20 DNA MER1_type 8 212 -7 642 167 40 8 chr6 29016598 29016724 -160262830 + L1PA13 LINE L1 6033 6162 -1 26 30 0 0 chr6 29016790 29016823 -160262731 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr6 29017384 29017417 -160262137 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr6 29018096 29018120 -160261434 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr6 29018181 29018211 -160261343 + AT_rich Low_complexity Low_complexity 1 30 0 3707 44 16 0 chr6 29018691 29019119 -160260435 - L1PA3 LINE L1 0 6155 5721 7165 23 0 0 chr6 29019119 29020278 -160259276 + L1PA3 LINE L1 4563 5721 -434 432 268 0 0 chr6 29020448 29020545 -160259009 + Tigger3(Golem) DNA MER2_type 2 98 -2931 436 238 0 0 chr6 29020558 29020642 -160258912 + Tigger3(Golem) DNA MER2_type 2954 3037 0 252 216 0 0 chr6 29020988 29021039 -160258515 + L1MC4 LINE L1 6653 6703 -1339 230 191 0 0 chr6 29021042 29021089 -160258465 + LTR66 LTR ERVL 392 438 -172 297 240 0 0 chr6 29021090 29021165 -160258389 + (TA)n Simple_repeat Simple_repeat 2 76 0 1767 132 59 0 chr6 29021165 29021438 -160258116 - AluSq SINE Alu -22 291 3 28 48 0 0 chr6 29021797 29021839 -160257715 + AT_rich Low_complexity Low_complexity 1 42 0 1354 214 50 10 chr6 29022964 29023263 -160256291 - AluJo SINE Alu -1 311 1 287 149 0 60 chr6 29024573 29024640 -160254914 + MADE1 DNA Mariner 1 63 -17 274 295 169 38 chr6 29024805 29025066 -160254488 - MLT1J LTR MaLR -210 301 7 309 243 0 162 chr6 29027138 29027311 -160252243 - L2 LINE L2 -4 3309 3165 407 78 16 0 chr6 29027823 29027887 -160251667 + (CA)n Simple_repeat Simple_repeat 1 65 0 544 279 53 33 chr6 29028190 29028434 -160251120 - LTR16A LTR ERVL -184 266 18 28 71 0 0 chr6 29029797 29029853 -160249701 + AT_rich Low_complexity Low_complexity 1 56 0 29 0 0 0 chr6 29030180 29030209 -160249345 + AT_rich Low_complexity Low_complexity 1 29 0 6623 31 0 5 chr6 29030367 29031110 -160248444 - L1PA3 LINE L1 -3 6152 5414 11015 41 1 0 chr6 29031110 29032454 -160247100 + L1M1 LINE L1 4101 5448 -743 218 331 66 22 chr6 29033034 29033170 -160246384 + L2 LINE L2 2122 2263 -1051 21 0 0 0 chr6 29033246 29033267 -160246287 + AT_rich Low_complexity Low_complexity 1 21 0 1021 144 98 90 chr6 29033951 29034207 -160245347 - Tigger2 DNA MER2_type -10 2708 2451 3797 186 35 0 chr6 29034261 29034993 -160244561 - Tigger2 DNA MER2_type -1959 759 2 1358 276 95 84 chr6 29035091 29036608 -160242946 + MER110-int LTR ERV1 1952 3590 -1057 715 264 98 8 chr6 29036815 29037069 -160242485 + MLT1D LTR MaLR 1 277 -228 381 300 0 0 chr6 29037166 29037276 -160242278 + MLT1A2 LTR MaLR 51 160 -214 918 197 11 26 chr6 29037328 29037539 -160242015 + MLT1A2 LTR MaLR 182 374 0 * 928 283 9 0 chr6 29037539 29037768 -160241786 + MLT1D LTR MaLR 275 505 0 655 216 120 0 chr6 29037920 29038126 -160241428 - MER33 DNA MER1_type -264 60 1 180 0 0 0 chr6 29038165 29038185 -160241369 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 436 325 48 10 chr6 29038336 29038542 -160241012 + MER110 LTR ERV1 242 455 -36 1195 186 154 7 chr6 29039061 29039295 -160240259 + MER47A DNA MER2_type 1 292 -2031 12616 60 6 1 chr6 29039295 29041671 -160237883 - L1PA6 LINE L1 -4 6150 3742 1195 186 154 7 chr6 29041671 29041742 -160237812 + MER47A DNA MER2_type 292 351 -15 483 63 0 0 chr6 29041813 29041876 -160237678 + (CA)n Simple_repeat Simple_repeat 2 64 0 1820 139 158 13 chr6 29042645 29043019 -160236535 + MSTA LTR MaLR 1 428 0 8890 158 8 35 chr6 29043021 29044643 -160234911 + MSTA-int LTR MaLR 3 1580 0 1624 178 131 18 chr6 29044645 29045027 -160234527 + MSTA LTR MaLR 3 427 -1 1583 251 48 15 chr6 29045471 29045926 -160233628 - MLT1D LTR MaLR 0 505 36 315 310 9 17 chr6 29046202 29046318 -160233236 + MIR SINE MIR 124 238 -24 749 269 28 9 chr6 29047512 29047724 -160231830 + MER20 DNA MER1_type 2 217 -2 183 80 0 0 chr6 29047762 29047787 -160231767 + (T)n Simple_repeat Simple_repeat 1 25 0 273 373 88 28 chr6 29048057 29048456 -160231098 - MLT1J1 LTR MaLR -3 443 21 1105 113 6 0 chr6 29048481 29048641 -160230913 + AluSg/x SINE Alu 151 311 -1 2125 109 10 6 chr6 29048789 29049100 -160230454 - AluSq SINE Alu -1 312 1 431 359 67 10 chr6 29049791 29050000 -160229554 + L1PA16 LINE L1 790 1010 -6564 12357 240 27 20 chr6 29050124 29053853 -160225701 + L1PA16 LINE L1 2182 5884 -1720 1050 185 132 57 chr6 29053853 29054118 -160225436 + AluJo SINE Alu 2 286 -16 1111 67 0 12 chr6 29054118 29054282 -160225272 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 12357 240 27 20 chr6 29054282 29055108 -160224446 + L1PA16 LINE L1 5884 6775 -829 1768 78 19 109 chr6 29055108 29055429 -160224125 + L1PA10 LINE L1 5876 6167 -1 12357 240 27 20 chr6 29055429 29056161 -160223393 + L1PA16 LINE L1 6775 7500 -104 2021 186 108 48 chr6 29056561 29057653 -160221901 - pTR5 LTR ERV1 -259 2179 743 397 322 72 15 chr6 29057973 29058237 -160221317 - MER110 LTR ERV1 -26 465 187 266 224 19 112 chr6 29058311 29058418 -160221136 - MER110A LTR ERV1 -298 170 74 326 98 0 16 chr6 29058617 29058678 -160220876 + (TG)n Simple_repeat Simple_repeat 2 61 0 419 141 13 0 chr6 29059629 29059707 -160219847 + (TA)n Simple_repeat Simple_repeat 1 79 0 21 0 0 0 chr6 29060421 29060442 -160219112 + AT_rich Low_complexity Low_complexity 1 21 0 354 308 70 69 chr6 29062147 29062521 -160217033 + L1ME3A LINE L1 4348 4722 -1424 245 270 40 10 chr6 29062764 29062864 -160216690 + L1ME3A LINE L1 5341 5443 -719 543 316 58 69 chr6 29062923 29063362 -160216192 + L1ME3A LINE L1 5479 5941 -223 233 298 112 42 chr6 29063511 29063796 -160215758 + L1MC/D LINE L1 5293 5597 -2211 402 74 0 0 chr6 29064435 29064489 -160215065 + (CA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr6 29064724 29064745 -160214809 + AT_rich Low_complexity Low_complexity 1 21 0 1927 148 7 3 chr6 29064888 29065193 -160214361 + AluSx SINE Alu 1 306 -6 185 0 40 0 chr6 29065616 29065641 -160213913 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 23 0 0 0 chr6 29065734 29065757 -160213797 + AT_rich Low_complexity Low_complexity 1 23 0 1316 269 89 44 chr6 29065990 29066620 -160212934 + L1ME2 LINE L1 3855 4556 -1590 2475 141 24 12 chr6 29066620 29067039 -160212515 + MSTA LTR MaLR 5 428 0 1316 269 89 44 chr6 29067039 29067501 -160212053 + L1ME2 LINE L1 4556 4996 -1150 31 96 0 0 chr6 29067648 29067742 -160211812 + AT_rich Low_complexity Low_complexity 1 94 0 809 227 173 27 chr6 29067797 29068172 -160211382 + L1ME2 LINE L1 5329 5758 -406 606 210 167 21 chr6 29068177 29068363 -160211191 - MER20 DNA MER1_type -6 213 1 528 241 49 15 chr6 29068376 29068579 -160210975 + L1ME2 LINE L1 5768 5977 -187 286 292 26 0 chr6 29068626 29068739 -160210815 + L1MA10 LINE L1 6215 6330 -4 586 237 97 22 chr6 29068743 29068887 -160210667 + LTR37B LTR ERV1 221 390 -78 1252 234 37 68 chr6 29068887 29069369 -160210185 - MLT1C LTR MaLR 0 467 1 586 237 97 22 chr6 29069369 29069452 -160210102 + LTR37B LTR ERV1 390 465 -3 438 210 68 31 chr6 29069686 29069848 -160209706 - L1M4 LINE L1 -2163 3983 3816 29 78 0 0 chr6 29070648 29070712 -160208842 + AT_rich Low_complexity Low_complexity 1 64 0 38 39 0 0 chr6 29070816 29070868 -160208686 + AT_rich Low_complexity Low_complexity 1 52 0 206 300 0 0 chr6 29071846 29071896 -160207658 - MER5A DNA MER1_type -87 102 53 225 233 151 68 chr6 29072706 29072779 -160206775 - MER2 DNA MER2_type 0 345 267 933 153 8 115 chr6 29072826 29073061 -160206493 - MER2 DNA MER2_type -135 210 1 201 74 0 0 chr6 29073393 29073420 -160206134 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 232 246 132 53 chr6 29073729 29073843 -160205711 + L2 LINE L2 3158 3280 -33 25 0 0 0 chr6 29074377 29074402 -160205152 + AT_rich Low_complexity Low_complexity 1 25 0 237 335 26 26 chr6 29074989 29075144 -160204410 - L1MEc LINE L1 -4723 1673 1519 34 24 0 0 chr6 29076967 29077008 -160202546 + AT_rich Low_complexity Low_complexity 1 41 0 275 274 0 20 chr6 29077032 29077134 -160202420 + T-rich Low_complexity Low_complexity 1 100 0 235 359 32 19 chr6 29077361 29077517 -160202037 + L2 LINE L2 2431 2588 -726 201 323 71 40 chr6 29077529 29077628 -160201926 - L2 LINE L2 -852 2462 2361 * 392 338 98 26 chr6 29077626 29077931 -160201623 + L2 LINE L2 2622 2948 -366 287 341 123 6 chr6 29078069 29078248 -160201306 + L2 LINE L2 3114 3313 0 247 372 0 0 chr6 29079072 29079158 -160200396 + L2 LINE L2 2992 3077 -195 726 133 7 14 chr6 29079795 29079938 -160199616 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 255 229 64 0 chr6 29079986 29080095 -160199459 + (TA)n Simple_repeat Simple_repeat 1 116 0 608 22 44 0 chr6 29080790 29080880 -160198674 + (CA)n Simple_repeat Simple_repeat 2 95 0 332 274 112 56 chr6 29081068 29081445 -160198109 - L1MC4 LINE L1 -252 7790 7290 22 0 0 0 chr6 29082899 29082921 -160196633 + AT_rich Low_complexity Low_complexity 1 22 0 5782 94 23 19 chr6 29083063 29084602 -160194952 + L1PA8A LINE L1 4592 6131 0 2466 260 49 54 chr6 29084989 29086657 -160192897 - MER41-int LTR ERV1 0 4871 3355 1883 191 47 29 chr6 29086639 29087188 -160192366 - MER41-int LTR ERV1 -1112 3824 3266 * 3580 91 5 62 chr6 29087703 29087886 -160191668 + L1PB1 LINE L1 5600 5792 -359 267 31 0 0 chr6 29087886 29087918 -160191636 + (TG)n Simple_repeat Simple_repeat 1 32 0 3580 91 5 62 chr6 29087918 29088318 -160191236 + L1PB1 LINE L1 5792 6150 -1 1189 161 109 123 chr6 29090844 29091403 -160188151 - MER41-int LTR ERV1 -1755 4576 4026 5210 120 31 10 chr6 29091464 29092337 -160187217 - L1PA15 LINE L1 0 6165 5275 1632 278 45 53 chr6 29092339 29093091 -160186463 - L1PA12 LINE L1 -6834 747 2 373 227 18 9 chr6 29093098 29093208 -160186346 - MER41-int LTR ERV1 -2345 2591 2481 * 569 237 75 98 chr6 29093206 29094634 -160184920 - MER41-int LTR ERV1 -2550 2980 1161 249 196 196 9 chr6 29094686 29094798 -160184756 - MER34C LTR ERV1 -293 292 160 440 220 0 0 chr6 29094800 29094900 -160184654 - MER41-int LTR ERV1 -4133 990 891 580 278 108 43 chr6 29095167 29095292 -160184262 - MER65A LTR ERV1 0 445 330 2068 131 150 5 chr6 29095292 29095666 -160183888 - MSTA LTR MaLR 0 428 1 580 278 108 43 chr6 29095666 29095958 -160183596 - MER65A LTR ERV1 -115 330 1 2277 112 3 0 chr6 29096018 29096330 -160183224 + AluSp SINE Alu 1 313 0 496 243 90 35 chr6 29097046 29097301 -160182253 + MER20B DNA MER1_type 238 506 -277 252 86 0 0 chr6 29097495 29097504 -160182050 + (TG)n Simple_repeat Simple_repeat 1 44 0 252 86 0 0 chr6 29097504 29097539 -160182015 + (TG)n Simple_repeat Simple_repeat 2 36 0 1970 148 29 37 chr6 29097644 29098022 -160181532 - THE1C LTR MaLR 0 375 1 1873 179 102 8 chr6 29098054 29098445 -160181109 + MSTA LTR MaLR 1 428 0 618 184 202 83 chr6 29098515 29098907 -160180647 + MER31B LTR ERV1 1 514 0 267 31 0 0 chr6 29099829 29099861 -160179693 + (GA)n Simple_repeat Simple_repeat 1 32 0 722 245 55 10 chr6 29099899 29100099 -160179455 - MER58A DNA MER1_type -12 212 4 348 279 152 44 chr6 29100157 29100315 -160179239 - MER5B DNA MER1_type -3 175 1 229 318 73 9 chr6 29100368 29100478 -160179076 - L2 LINE L2 -2344 970 854 814 259 138 56 chr6 29100531 29101047 -160178507 + MLT1F LTR MaLR 3 540 -2 32 91 0 0 chr6 29102446 29102534 -160177020 + AT_rich Low_complexity Low_complexity 1 88 0 2068 139 7 0 chr6 29102614 29102917 -160176637 + AluSx SINE Alu 1 305 -7 209 364 0 0 chr6 29103377 29103443 -160176111 - MIR SINE MIR -38 224 159 1699 145 74 3 chr6 29104174 29104457 -160175097 + AluSx SINE Alu 1 303 -9 5043 214 52 41 chr6 29104489 29106208 -160173346 - L1MCa LINE L1 -2216 4210 2473 787 115 66 93 chr6 29106209 29106392 -160173162 - AluJb SINE Alu -13 299 122 1090 154 75 19 chr6 29106392 29106658 -160172896 - L1MCa LINE L1 -3971 2455 2175 2176 91 16 53 chr6 29106658 29106977 -160172577 - AluSx SINE Alu -5 307 1 3217 264 109 39 chr6 29107049 29108084 -160171470 + L1M3d LINE L1 572 1488 -5165 1910 113 4 18 chr6 29108084 29108359 -160171195 + AluSx SINE Alu 39 309 -3 3217 264 109 39 chr6 29108359 29108614 -160170940 + L1M3d LINE L1 1488 1724 -4929 1949 120 72 10 chr6 29108614 29108906 -160170648 + AluSx SINE Alu 1 310 -2 23164 80 7 16 chr6 29108913 29112284 -160167270 + L1P LINE L1 11 3349 -2797 369 235 10 20 chr6 29212332 29212430 -160067124 + Charlie1 DNA MER1_type 1799 1895 -866 2290 85 17 0 chr6 29213588 29213882 -160065672 - AluSq SINE Alu -14 299 1 451 90 0 22 chr6 29214719 29214808 -160064746 + (TG)n Simple_repeat Simple_repeat 2 88 0 21 0 0 0 chr6 29215091 29215112 -160064442 + AT_rich Low_complexity Low_complexity 1 21 0 2339 75 3 7 chr6 29215336 29215642 -160063912 + AluY SINE Alu 3 307 -4 23 0 0 0 chr6 29215755 29215778 -160063776 + AT_rich Low_complexity Low_complexity 1 23 0 907 181 34 61 chr6 29215778 29216074 -160063480 - L1MA9 LINE L1 -25 6287 5904 * 1110 201 85 61 chr6 29216072 29216400 -160063154 + L1MA9 LINE L1 5553 5888 -424 232 309 8 40 chr6 29216486 29216612 -160062942 + L2 LINE L2 3117 3238 -75 186 309 72 31 chr6 29217180 29217277 -160062277 - L2 LINE L2 -229 3043 2943 314 302 0 17 chr6 29217367 29217483 -160062071 + CT-rich Low_complexity Low_complexity 1 114 0 2234 84 7 0 chr6 29219481 29219777 -160059777 - AluSg SINE Alu -12 298 1 445 337 43 17 chr6 29221225 29221631 -160057923 - MLT1H LTR MaLR -16 533 82 27 49 0 0 chr6 29221804 29221845 -160057709 + AT_rich Low_complexity Low_complexity 1 41 0 2041 80 3 27 chr6 29221875 29222175 -160057379 + AluY SINE Alu 3 295 -16 415 220 30 30 chr6 29222481 29222581 -160056973 - MIR SINE MIR -56 206 107 2213 81 0 7 chr6 29222610 29222905 -160056649 - AluSc SINE Alu -13 296 4 30 27 0 0 chr6 29223025 29223062 -160056492 + AT_rich Low_complexity Low_complexity 1 37 0 1299 227 22 22 chr6 29223629 29223950 -160055604 - MER63 DNA MER1_type 0 1062 742 448 120 82 4 chr6 29224121 29224396 -160055158 + (TA)n Simple_repeat Simple_repeat 1 296 0 240 130 43 0 chr6 29224408 29224477 -160055077 + (TA)n Simple_repeat Simple_repeat 1 72 0 198 0 0 0 chr6 29224998 29225020 -160054534 + (A)n Simple_repeat Simple_repeat 1 22 0 2452 158 38 14 chr6 29226082 29226587 -160052967 - L1MA4 LINE L1 -3 6297 5781 21 36 0 0 chr6 29226624 29226652 -160052902 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 29227778 29227807 -160051747 + AT_rich Low_complexity Low_complexity 1 29 0 268 198 111 12 chr6 29228018 29228099 -160051455 - L1MA9 LINE L1 -22 6290 6202 746 204 39 23 chr6 29228245 29228537 -160051017 - MLT1A1 LTR MaLR -15 350 1 26 30 0 0 chr6 29228895 29228928 -160050626 + AT_rich Low_complexity Low_complexity 1 33 0 1977 106 4 4 chr6 29230060 29230334 -160049220 - AluSp SINE Alu -39 274 1 1074 241 110 48 chr6 29230669 29231245 -160048309 - MLT1D LTR MaLR -4 501 3 228 267 103 34 chr6 29231544 29231690 -160047864 - L1ME3 LINE L1 -44 6118 5963 646 297 6 6 chr6 29232090 29232272 -160047282 - MLT1I LTR MaLR -159 250 69 2119 121 0 10 chr6 29232826 29233131 -160046423 - AluSg SINE Alu -8 302 1 1410 184 6 69 chr6 29233472 29233715 -160045839 - AluJo SINE Alu -12 300 80 2382 55 0 39 chr6 29233715 29234026 -160045528 + AluY SINE Alu 2 300 -11 1410 184 6 69 chr6 29234026 29234102 -160045452 - AluJo SINE Alu -232 80 1 985 312 49 18 chr6 29234752 29235137 -160044417 - MLT1I LTR MaLR -12 397 1 1823 145 0 21 chr6 29235226 29235516 -160044038 - AluSx SINE Alu -15 297 14 482 151 35 0 chr6 29235436 29235522 -160044032 - AluS SINE Alu -220 93 5 807 121 16 0 chr6 29235782 29235906 -160043648 - AluSq/x SINE Alu -186 126 1 1871 97 86 0 chr6 29236258 29236526 -160043028 + AluSp SINE Alu 1 291 -22 1090 233 145 44 chr6 29237719 29238179 -160041375 + MLT1D LTR MaLR 1 390 0 24 0 0 0 chr6 29238468 29238492 -160041062 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr6 29239272 29239311 -160040243 + AT_rich Low_complexity Low_complexity 1 39 0 1380 227 49 94 chr6 29240038 29240722 -160038832 - L1MC5 LINE L1 -697 7264 6603 2438 74 0 3 chr6 29241128 29241440 -160038114 - AluY SINE Alu 0 311 1 341 309 18 36 chr6 29241803 29242078 -160037476 - L1MC5 LINE L1 -2166 5642 5373 2401 62 16 10 chr6 29342478 29342787 -159936767 - AluY SINE Alu 0 311 1 255 133 0 0 chr6 29343060 29343105 -159936449 + (TCCCC)n Simple_repeat Simple_repeat 2 46 0 1547 190 11 4 chr6 29343105 29343384 -159936170 - AluJb SINE Alu -18 294 14 295 104 15 15 chr6 29343521 29343588 -159935966 + (TA)n Simple_repeat Simple_repeat 2 68 0 730 137 23 30 chr6 29345128 29345259 -159934295 - AluJo SINE Alu -66 246 117 2193 119 0 0 chr6 29347299 29347592 -159931962 - AluSx SINE Alu -17 295 3 1191 111 0 0 chr6 29347593 29347746 -159931808 - AluSg/x SINE Alu -18 294 142 363 313 70 26 chr6 29347986 29348213 -159931341 - L1ME LINE L1 -5145 1786 1550 227 292 28 0 chr6 29348249 29348321 -159931233 - L1ME LINE L1 -5071 1352 1279 207 0 0 0 chr6 29348814 29348837 -159930717 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1041 237 73 15 chr6 29350222 29350551 -159929003 - L1ME3A LINE L1 -51 6119 5772 392 196 58 116 chr6 29350573 29350711 -159928843 + L2 LINE L2 3176 3305 -8 426 318 121 12 chr6 29351900 29352073 -159927481 - MIR SINE MIR -19 243 52 184 222 74 19 chr6 29352366 29352420 -159927134 + L2 LINE L2 3256 3312 -1 1149 244 15 7 chr6 29353293 29353563 -159925991 - MLT1C LTR MaLR 0 467 196 750 168 0 0 chr6 29353569 29353706 -159925848 + CT-rich Low_complexity Low_complexity 4 140 0 465 250 0 0 chr6 29353720 29353844 -159925710 + T-rich Low_complexity Low_complexity 1 124 0 * 935 160 0 6 chr6 29353830 29354011 -159925543 + CT-rich Low_complexity Low_complexity 1 180 0 747 181 7 0 chr6 29354018 29354156 -159925398 - FRAM SINE Alu -17 159 21 614 228 25 13 chr6 29354167 29354325 -159925229 - MLT1C LTR MaLR -307 160 1 3067 256 96 20 chr6 29355636 29356905 -159922649 - L1MC4 LINE L1 -145 7897 6441 2294 218 61 17 chr6 29357008 29357760 -159921794 - L1ME2 LINE L1 -228 5936 5147 1344 251 91 31 chr6 29357836 29358254 -159921300 - MER69 DNA AcHobo -2083 443 1 22 0 0 0 chr6 29358397 29358419 -159921135 + AT_rich Low_complexity Low_complexity 1 22 0 887 146 70 49 chr6 29358517 29358702 -159920852 - BC200 scRNA scRNA -7 193 5 367 293 120 0 chr6 29359285 29359435 -159920119 + ERVL LTR ERVL 2323 2490 -3274 293 224 60 0 chr6 29359435 29359502 -159920052 + MER76 LTR ERV 595 665 -23 * 554 227 21 14 chr6 29359489 29359630 -159919924 + MLT1D LTR MaLR 362 503 -2 329 352 44 32 chr6 29359673 29359923 -159919631 + ERVL LTR ERVL 3007 3259 -2226 200 35 35 0 chr6 29360027 29360056 -159919498 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 223 214 18 0 chr6 29360087 29360143 -159919411 + (TA)n Simple_repeat Simple_repeat 1 57 0 7819 173 36 66 chr6 29360196 29360355 -159919199 - L1MC4a LINE L1 0 7808 7646 2009 133 0 7 chr6 29360355 29360655 -159918899 + AluSx SINE Alu 1 298 -14 7819 173 36 66 chr6 29360655 29361733 -159917821 - L1MC4a LINE L1 -162 7646 6646 213 39 0 0 chr6 29361733 29361759 -159917795 + (TG)n Simple_repeat Simple_repeat 1 26 0 7819 173 36 66 chr6 29361759 29362470 -159917084 - L1MC4a LINE L1 -1162 6646 5916 2109 142 0 13 chr6 29362510 29362821 -159916733 + AluSx SINE Alu 5 311 -1 1892 113 58 24 chr6 29362822 29363113 -159916441 - THE1B LTR MaLR -63 301 1 12278 84 1 0 chr6 29363113 29364692 -159914862 - THE1B-int LTR MaLR 0 1580 1 2254 101 72 23 chr6 29364692 29365039 -159914515 - THE1B LTR MaLR 0 364 1 226 319 43 0 chr6 29365170 29365239 -159914315 - MIR SINE MIR -20 242 171 24 32 0 0 chr6 29366863 29366894 -159912660 + AT_rich Low_complexity Low_complexity 1 31 0 209 189 0 0 chr6 29367671 29367708 -159911846 + (TG)n Simple_repeat Simple_repeat 1 37 0 244 355 133 15 chr6 29369852 29370055 -159909499 + MIR SINE MIR 31 257 -5 24 53 0 0 chr6 29370056 29370094 -159909460 + AT_rich Low_complexity Low_complexity 1 38 0 1999 124 0 48 chr6 29371450 29371764 -159907790 - AluSx SINE Alu -11 301 3 1671 164 25 7 chr6 29373252 29373527 -159906027 + AluJo SINE Alu 1 280 -32 603 94 19 9 chr6 29373527 29373633 -159905921 + (GAAA)n Simple_repeat Simple_repeat 4 110 0 842 278 90 34 chr6 29375947 29376303 -159903251 - L2 LINE L2 0 3313 2938 494 227 133 0 chr6 29376315 29376465 -159903089 - L2 LINE L2 -1206 2108 1939 635 234 15 0 chr6 29376935 29377072 -159902482 + MIR SINE MIR 102 240 -22 487 302 90 19 chr6 29377163 29377540 -159902014 + L1MC/D LINE L1 4645 5048 -1098 542 261 105 4 chr6 29377669 29377907 -159901647 + L1MC/D LINE L1 5254 5515 -2293 235 243 27 40 chr6 29377907 29377981 -159901573 - MER76 LTR ERV -3 685 613 794 51 0 0 chr6 29377981 29378079 -159901475 + L1P LINE L1 1 98 -6048 * 5004 74 178 10 chr6 29378048 29378844 -159900710 + L1P LINE L1 580 1509 -4637 * 12978 23 0 2 chr6 29378839 29380374 -159899180 - L1P LINE L1 -802 5344 3813 925 344 65 38 chr6 29380676 29381651 -159897903 - ERVL LTR ERVL -1290 4195 3195 349 261 50 1 chr6 29381688 29381783 -159897771 - ERVL LTR ERVL -1901 3095 3010 306 312 9 46 chr6 29381783 29381892 -159897662 - LTR16A LTR ERVL -143 307 203 783 320 53 14 chr6 29382192 29382581 -159896973 + MLT1H LTR MaLR 1 442 -107 1377 297 88 11 chr6 29382657 29383370 -159896184 + L1M4 LINE L1 3600 4367 -1779 283 301 66 22 chr6 29384896 29385032 -159894522 + MIR SINE MIR 58 199 -63 279 308 80 34 chr6 29385713 29385976 -159893578 - L1MC/D LINE L1 -515 5727 5453 1595 139 68 4 chr6 29388052 29388318 -159891236 - AluJb SINE Alu -1 311 29 318 188 130 0 chr6 29388318 29388387 -159891167 - AluJ/FLAM SINE Alu -224 78 1 2322 108 0 0 chr6 29388781 29389077 -159890477 - AluSx SINE Alu -14 298 3 27 81 0 0 chr6 29390029 29390091 -159889463 + AT_rich Low_complexity Low_complexity 1 62 0 344 274 59 67 chr6 29390127 29390397 -159889157 - L1MC4a LINE L1 -1755 6053 5786 435 324 21 7 chr6 29390979 29391124 -159888430 - MIR SINE MIR -98 164 18 1735 64 64 0 chr6 29391249 29391482 -159888072 + L1PB1 LINE L1 5904 6151 0 333 0 0 0 chr6 29393192 29393229 -159886325 + (CA)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr6 29394369 29394393 -159885161 + AT_rich Low_complexity Low_complexity 1 24 0 3751 138 44 11 chr6 29394519 29395173 -159884381 - L1MB3 LINE L1 0 6183 5508 531 165 21 0 chr6 29395423 29395520 -159884034 + FLAM_C SINE Alu 38 136 -7 451 339 71 51 chr6 29395748 29395967 -159883587 + L3 LINE CR1 1210 1440 -137 2187 121 0 10 chr6 29395967 29396280 -159883274 + AluSq SINE Alu 1 310 -3 451 339 71 51 chr6 29396280 29396414 -159883140 + L3 LINE CR1 1440 1570 -7 1571 252 50 8 chr6 29396622 29397173 -159882381 - L1MC4a LINE L1 -406 5772 5206 600 160 19 0 chr6 29397173 29397279 -159882275 - AluSg/x SINE Alu -7 302 195 288 203 16 0 chr6 29397291 29397355 -159882199 - L1MB7 LINE L1 -9 6175 6111 311 172 16 0 chr6 29397385 29397449 -159882105 - L1MB7 LINE L1 -9 6175 6111 887 205 0 6 chr6 29397449 29397620 -159881934 + AluJb SINE Alu 137 306 -6 4074 178 44 30 chr6 29397620 29398158 -159881396 - L1MB7 LINE L1 -63 6121 5592 2105 104 62 0 chr6 29398158 29398446 -159881108 - AluSx SINE Alu -6 306 1 4074 178 44 30 chr6 29398446 29399563 -159879991 - L1MB7 LINE L1 -592 5592 4442 341 256 8 34 chr6 29399659 29399776 -159879778 - L1M4 LINE L1 -6335 207 94 338 85 0 0 chr6 29399770 29399817 -159879737 + L1MC/D LINE L1 5196 5242 -904 * 288 0 0 0 chr6 29400250 29400282 -159879272 + (TG)n Simple_repeat Simple_repeat 2 33 0 1613 183 10 3 chr6 29400292 29400604 -159878950 + L1MC/D LINE L1 5255 5568 -2217 415 345 38 24 chr6 29400723 29401016 -159878538 - ERVL LTR ERVL -441 5323 5027 836 225 46 62 chr6 29401019 29401456 -159878098 - MLT1F LTR MaLR -5 537 94 2002 185 93 83 chr6 29401456 29402097 -159877457 - MER52A LTR ERV1 0 1755 586 1547 219 159 73 chr6 29402087 29402717 -159876837 - MER52A LTR ERV1 -406 1349 666 * 219 239 127 0 chr6 29402940 29403011 -159876543 + L2 LINE L2 3150 3229 -43 8434 157 28 32 chr6 29404170 29405887 -159873667 + L1MA6 LINE L1 3602 5310 -857 3892 142 42 32 chr6 29405904 29406116 -159873438 + L1MA6 LINE L1 5383 5592 -708 308 93 0 19 chr6 29406116 29406170 -159873384 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 3892 142 42 32 chr6 29406170 29406698 -159872856 + L1MA6 LINE L1 5592 6130 -170 939 103 21 77 chr6 29406757 29406852 -159872702 + L1MA6 LINE L1 6115 6195 -105 2126 104 10 7 chr6 29406852 29407149 -159872405 - AluSg SINE Alu -12 298 1 939 103 21 77 chr6 29407149 29407247 -159872307 + L1MA6 LINE L1 6195 6297 -3 38 68 0 0 chr6 29407409 29407482 -159872072 + AT_rich Low_complexity Low_complexity 1 73 0 21 57 0 0 chr6 29407494 29407529 -159872025 + AT_rich Low_complexity Low_complexity 1 35 0 516 105 0 0 chr6 29407583 29407659 -159871895 + (CA)n Simple_repeat Simple_repeat 2 77 0 621 322 68 11 chr6 29407683 29408136 -159871418 - L1MC/D LINE L1 -2011 5797 5319 2239 91 7 0 chr6 29408428 29408725 -159870829 - AluY SINE Alu -12 299 1 30 77 0 0 chr6 29409104 29409169 -159870385 + AT_rich Low_complexity Low_complexity 1 65 0 525 329 74 55 chr6 29410748 29411178 -159868376 + L3 LINE CR1 832 1278 -299 1675 151 0 47 chr6 29411178 29411501 -159868053 + AluJb SINE Alu 1 309 0 525 329 74 55 chr6 29411501 29411649 -159867905 + L3 LINE CR1 1278 1422 -155 1576 180 56 28 chr6 29413000 29413394 -159866160 - LTR37A LTR ERV1 -18 408 4 245 247 62 96 chr6 29413858 29414004 -159865550 + L2 LINE L2 3151 3291 -22 1908 137 11 3 chr6 29416219 29416504 -159863050 - AluJb SINE Alu -23 289 3 1930 148 0 3 chr6 29417450 29417740 -159861814 - AluSq SINE Alu -24 289 1 249 327 46 14 chr6 29417930 29418098 -159861456 + MIR SINE MIR 6 176 -66 313 289 72 11 chr6 29419759 29419939 -159859615 + L1ME3A LINE L1 5767 5957 -213 953 307 87 50 chr6 29420181 29420917 -159858637 + HAL1 LINE L1 123 885 -1622 801 251 191 12 chr6 29421228 29421745 -159857809 + L1ME LINE L1 4424 5033 -1113 955 275 36 75 chr6 29421749 29422321 -159857233 - MLT1G LTR MaLR 0 590 71 1056 251 44 19 chr6 29422368 29422894 -159856660 + L1ME LINE L1 5078 5610 -554 255 207 0 17 chr6 29422894 29422952 -159856602 - MLT1H1 LTR MaLR 0 590 534 906 133 8 0 chr6 29422978 29423106 -159856448 - FLAM_C SINE Alu -14 129 1 277 291 135 57 chr6 29423120 29423412 -159856142 - MLT1H1 LTR MaLR -76 478 145 367 194 11 65 chr6 29423490 29423583 -159855971 + L1ME LINE L1 5603 5690 -474 1543 234 172 0 chr6 29423592 29424011 -159855543 - MER110 LTR ERV1 0 491 1 415 259 202 6 chr6 29424724 29424904 -159854650 - MIR SINE MIR -33 229 18 1660 201 25 22 chr6 29425279 29425642 -159853912 - MLT1A1 LTR MaLR -1 364 1 363 345 81 8 chr6 29425644 29425890 -159853664 - L2 LINE L2 -590 2724 2461 2115 124 0 16 chr6 29425929 29426235 -159853319 + AluSq SINE Alu 1 301 -12 563 158 55 62 chr6 29427025 29427171 -159852383 - L1MC1 LINE L1 0 6333 6189 * 5440 176 25 10 chr6 29427166 29428151 -159851403 - L1MC1 LINE L1 -1 6332 5328 2113 118 17 0 chr6 29428151 29428439 -159851115 - AluSx SINE Alu -17 295 3 5440 176 25 10 chr6 29428439 29428511 -159851043 - L1MC1 LINE L1 -1005 5328 5259 2273 116 31 0 chr6 29428919 29429246 -159850308 + MER1B DNA MER1_type 1 337 0 1527 202 8 58 chr6 29430231 29430613 -159848941 - MLT1A1 LTR MaLR -2 363 1 673 181 116 4 chr6 29430697 29430929 -159848625 + L1MEc LINE L1 2010 2267 -4129 * 2948 240 104 35 chr6 29430912 29430982 -159848572 + L1MEc LINE L1 3091 3155 -3060 2052 149 0 0 chr6 29430982 29431291 -159848263 + AluSx SINE Alu 1 309 -3 2948 240 104 35 chr6 29431291 29432433 -159847121 + L1MEc LINE L1 3155 4386 -1829 1995 153 0 0 chr6 29432444 29432739 -159846815 + AluSx SINE Alu 1 295 -17 264 272 29 29 chr6 29432777 29432880 -159846674 - MLT1H1 LTR MaLR -381 168 66 250 30 0 0 chr6 29432983 29433016 -159846538 + L1MA3 LINE L1 6250 6282 -23 4110 110 96 32 chr6 29433016 29433754 -159845800 - LTR1 LTR ERV1 0 785 1 2262 144 176 30 chr6 29435206 29435741 -159843813 + LTR18B LTR ERVL 2 614 0 1459 203 0 17 chr6 29435762 29436053 -159843501 + HERVL18 LTR ERVL 19 304 -5743 720 176 8 0 chr6 29436065 29436190 -159843364 + HERVL18 LTR ERVL 541 666 -5381 1090 202 3 67 chr6 29436218 29436602 -159842952 + HERVL18 LTR ERVL 1388 1810 -4237 627 180 25 14 chr6 29436601 29436822 -159842732 + HERVL18 LTR ERVL 2119 2450 -3597 * 833 239 0 6 chr6 29436823 29437028 -159842526 + HERVL18 LTR ERVL 2720 2961 -3086 3275 167 7 25 chr6 29437068 29437620 -159841934 + HERVL18 LTR ERVL 2945 3486 -2561 2231 135 191 41 chr6 29437750 29438284 -159841270 + LTR18B LTR ERVL 1 614 0 1478 254 39 14 chr6 29438287 29438724 -159840830 - MER41E LTR ERV1 -42 470 23 407 236 8 49 chr6 29439017 29439140 -159840414 + LTR38B LTR ERV1 1 118 -492 275 233 124 109 chr6 29439442 29439532 -159840022 + LTR38 LTR ERV1 264 351 -205 4649 102 23 12 chr6 29439532 29440215 -159839339 + LTR8 LTR ERV1 1 691 0 275 233 124 109 chr6 29440215 29440399 -159839155 + LTR38 LTR ERV1 351 542 -14 1340 249 75 27 chr6 29440687 29441128 -159838426 - MLT1C LTR MaLR 0 467 6 1606 247 52 30 chr6 29441136 29441501 -159838053 + L1M4 LINE L1 3371 3753 -2393 2210 93 0 32 chr6 29441501 29441812 -159837742 + AluSc SINE Alu 9 309 0 1606 247 52 30 chr6 29441812 29441985 -159837569 + L1M4 LINE L1 3753 3921 -2225 950 105 0 0 chr6 29441986 29442110 -159837444 - AluSp/q SINE Alu -17 296 173 1115 180 5 0 chr6 29442110 29442332 -159837222 + L1MC3 LINE L1 7555 7777 -8 1947 135 7 20 chr6 29442373 29442670 -159836884 - AluSx SINE Alu -19 293 1 305 270 102 35 chr6 29442877 29442933 -159836621 - L1M4 LINE L1 -1739 4407 4356 4995 170 39 10 chr6 29442933 29443809 -159835745 + MER54A LTR ERVL 1 901 0 305 270 102 35 chr6 29443809 29444008 -159835546 - L1M4 LINE L1 -1790 4356 4140 2173 131 0 0 chr6 29444155 29444460 -159835094 - AluSx SINE Alu -7 305 1 536 343 33 15 chr6 29444929 29445200 -159834354 - HERVL LTR ERVL -1857 3797 3522 337 111 0 37 chr6 29445205 29445259 -159834295 - HERVL LTR ERVL -2106 2890 2839 2439 326 29 33 chr6 29447625 29448407 -159831147 - HERVL LTR ERVL -2128 2868 2090 1640 211 48 81 chr6 29448407 29448929 -159830625 + MLT1D LTR MaLR 1 505 0 2439 326 29 33 chr6 29448929 29449302 -159830252 - HERVL LTR ERVL -2906 2090 1717 621 183 40 0 chr6 29449347 29449473 -159830081 + L1MC4 LINE L1 6822 6952 -1090 608 157 25 0 chr6 29449470 29449591 -159829963 + L1MD3 LINE L1 7870 7993 -2 * 2107 186 230 24 chr6 29449593 29449696 -159829858 + L1MC4 LINE L1 6939 7019 -1023 267 31 0 0 chr6 29449696 29449728 -159829826 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 2107 186 230 24 chr6 29449728 29450262 -159829292 + L1MC4 LINE L1 7019 7708 -334 978 214 34 0 chr6 29450262 29450468 -159829086 + U3 snRNA snRNA 1 213 -4 180 0 0 0 chr6 29450494 29450514 -159829040 + (CAA)n Simple_repeat Simple_repeat 2 21 0 940 121 15 0 chr6 29450548 29450680 -159828874 + AluJb SINE Alu 1 134 -178 22 56 0 0 chr6 29450683 29450719 -159828835 + AT_rich Low_complexity Low_complexity 1 36 0 419 226 75 9 chr6 29450721 29450930 -159828624 + L1MC4 LINE L1 7724 8029 -13 29 0 0 0 chr6 29452733 29452762 -159826792 + AT_rich Low_complexity Low_complexity 1 29 0 318 26 0 0 chr6 29452799 29452838 -159826716 + (CA)n Simple_repeat Simple_repeat 2 40 0 239 394 71 26 chr6 29453164 29453390 -159826164 + L2 LINE L2 2586 2821 -493 362 402 16 35 chr6 29453492 29453748 -159825806 + L2 LINE L2 2997 3247 -25 263 294 122 42 chr6 29454239 29454453 -159825101 - MIR SINE MIR -2 260 30 35 0 0 0 chr6 29454470 29454505 -159825049 + AT_rich Low_complexity Low_complexity 1 35 0 453 304 120 0 chr6 29454893 29455077 -159824477 - MIR SINE MIR -49 213 8 267 300 67 17 chr6 29455110 29455230 -159824324 - L2 LINE L2 -1007 2307 2182 44672 35 1 1 chr6 29455452 29461607 -159817947 + L1PA3 LINE L1 1 6152 -3 29 28 0 0 chr6 29461607 29461643 -159817911 + AT_rich Low_complexity Low_complexity 1 36 0 526 311 77 0 chr6 29461656 29461852 -159817702 - MIR SINE MIR -3 259 49 2365 81 0 13 chr6 29462078 29462376 -159817178 - AluSq SINE Alu -19 294 1 24 77 0 0 chr6 29462429 29462481 -159817073 + AT_rich Low_complexity Low_complexity 1 52 0 13705 113 84 37 chr6 29463099 29463618 -159815936 + Tigger1 DNA MER2_type 1 494 -1924 2240 45 38 0 chr6 29463618 29463906 -159815648 + L1PA4 LINE L1 5854 6152 -3 13705 113 84 37 chr6 29463906 29465694 -159813860 + Tigger1 DNA MER2_type 494 2418 0 1262 153 5 0 chr6 29465696 29465885 -159813669 + Tigger7 DNA MER2_type 1 190 -515 355 281 241 5 chr6 29466121 29466320 -159813234 + MIR SINE MIR 10 255 -7 363 288 80 8 chr6 29466358 29466483 -159813071 + L2 LINE L2 3179 3312 -1 21 0 0 0 chr6 29466757 29466778 -159812776 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr6 29467456 29467488 -159812066 + AT_rich Low_complexity Low_complexity 1 32 0 303 284 168 17 chr6 29468087 29468432 -159811122 + L1ME4a LINE L1 5724 6120 -1 186 209 0 0 chr6 29470095 29470138 -159809416 + (TA)n Simple_repeat Simple_repeat 2 44 0 2350 39 0 3 chr6 29470904 29471190 -159808364 + L1PA5 LINE L1 5854 6138 -16 1051 182 0 11 chr6 29471207 29471394 -159808160 + AluJb SINE Alu 120 304 -8 390 122 8 0 chr6 29471508 29471596 -159807958 - AluJ/FRAM SINE Alu 0 309 230 209 277 0 0 chr6 29471904 29471951 -159807603 + L2 LINE L2 3267 3313 0 33 73 0 0 chr6 29471959 29472027 -159807527 + AT_rich Low_complexity Low_complexity 1 68 0 238 266 109 8 chr6 29472381 29472509 -159807045 - L1MDa LINE L1 -4757 1372 1232 2119 72 0 0 chr6 29472599 29472861 -159806693 - AluY SINE Alu -17 294 33 301 272 91 78 chr6 29472862 29473105 -159806449 - L1MDa LINE L1 -4956 1163 918 1519 134 0 0 chr6 29473886 29474110 -159805444 - AluJb SINE Alu -26 286 63 186 324 54 0 chr6 29475119 29475193 -159804361 - L2 LINE L2 -45 3227 3150 395 352 114 26 chr6 29475726 29476417 -159803137 - L2 LINE L2 -751 2563 1812 2184 92 0 0 chr6 29476895 29477213 -159802341 - AluSx SINE Alu 0 318 1 630 221 25 13 chr6 29478563 29478721 -159800833 + MLT1C LTR MaLR 1 160 -307 747 181 7 0 chr6 29478732 29478870 -159800684 + FRAM SINE Alu 21 159 -17 886 161 6 6 chr6 29478877 29479057 -159800497 + GA-rich Low_complexity Low_complexity 1 180 0 315 248 17 8 chr6 29479032 29479149 -159800405 + A-rich Low_complexity Low_complexity 4 121 0 * 642 184 0 0 chr6 29479162 29479287 -159800267 + GA-rich Low_complexity Low_complexity 4 128 0 1149 244 15 7 chr6 29479293 29479563 -159799991 + MLT1C LTR MaLR 196 467 0 184 222 74 19 chr6 29480436 29480490 -159799064 - L2 LINE L2 -1 3312 3256 406 303 136 13 chr6 29480783 29480938 -159798616 + MIR SINE MIR 52 225 -37 392 196 58 116 chr6 29482146 29482284 -159797270 - L2 LINE L2 -8 3305 3176 1057 231 73 15 chr6 29482306 29482635 -159796919 + L1ME3A LINE L1 5772 6119 -51 227 292 28 0 chr6 29484532 29484604 -159794950 + L1MCc LINE L1 1279 1352 -5071 363 313 70 26 chr6 29484640 29484867 -159794687 + L1MCc LINE L1 1550 1786 -5145 1191 111 0 0 chr6 29485107 29485260 -159794294 + AluSg/x SINE Alu 140 292 -18 2186 119 0 0 chr6 29485261 29485554 -159794000 + AluSx SINE Alu 3 295 -17 730 137 23 30 chr6 29487594 29487725 -159791829 + AluJo SINE Alu 117 246 -66 265 143 68 7 chr6 29489264 29489411 -159790143 + (TA)n Simple_repeat Simple_repeat 1 156 0 214 114 95 13 chr6 29489425 29489583 -159789971 + (TA)n Simple_repeat Simple_repeat 1 171 0 379 123 103 7 chr6 29490050 29490205 -159789349 + (TA)n Simple_repeat Simple_repeat 2 171 0 344 101 94 28 chr6 29490223 29490542 -159789012 + (TA)n Simple_repeat Simple_repeat 1 340 0 250 337 114 40 chr6 29491916 29492118 -159787436 - MIR SINE MIR -39 223 7 2387 68 0 0 chr6 29492542 29492847 -159786707 + AluY SINE Alu 1 305 0 1945 139 36 7 chr6 29493421 29493722 -159785832 - AluJb SINE Alu -2 310 1 204 229 21 57 chr6 29493949 29494089 -159785465 + A-rich Low_complexity Low_complexity 5 139 0 28 29 0 0 chr6 29495771 29495806 -159783748 + AT_rich Low_complexity Low_complexity 1 35 0 2160 107 0 28 chr6 29496211 29496529 -159783025 - AluSg1 SINE Alu 0 309 1 985 237 88 19 chr6 29497047 29497376 -159782178 + L1ME3A LINE L1 5535 5889 -281 1543 190 11 4 chr6 29497470 29497749 -159781805 + AluJb SINE Alu 14 294 -18 255 133 0 0 chr6 29497749 29497794 -159781760 + (GGGGA)n Simple_repeat Simple_repeat 2 46 0 2452 48 16 19 chr6 29498067 29498378 -159781176 + AluY SINE Alu 1 310 -1 1942 120 4 0 chr6 29498480 29498746 -159780808 - AluSx SINE Alu -45 267 1 240 398 19 12 chr6 29499036 29499197 -159780357 + MIR SINE MIR 20 181 -81 850 236 17 11 chr6 29499339 29499517 -159780037 - MLT1C LTR MaLR -102 365 187 2032 136 3 0 chr6 29499553 29499847 -159779707 + AluJb SINE Alu 1 295 -17 2172 111 3 3 chr6 29501354 29501652 -159777902 - AluSx SINE Alu -14 298 1 445 165 51 0 chr6 29502309 29502388 -159777166 + MSTA LTR MaLR 3 85 -343 1400 161 16 80 chr6 29502490 29502801 -159776753 + L1MDa LINE L1 72 362 -6178 219 289 0 0 chr6 29503259 29503311 -159776243 + L2 LINE L2 3262 3313 0 320 273 133 60 chr6 29505651 29505681 -159773873 - L2 LINE L2 0 3313 3287 1537 128 0 4 chr6 29505681 29505908 -159773646 - AluSx SINE Alu -86 226 1 320 273 133 60 chr6 29505908 29506126 -159773428 - L2 LINE L2 -26 3287 3047 1267 99 6 0 chr6 29506239 29506400 -159773154 + AluSx SINE Alu 1 162 -150 214 358 77 23 chr6 29506403 29506589 -159772965 - L2 LINE L2 -491 2823 2622 2130 131 3 0 chr6 29506589 29506895 -159772659 + AluSx SINE Alu 5 311 -1 214 358 77 23 chr6 29506895 29506929 -159772625 - L2 LINE L2 -692 2622 2591 185 397 68 0 chr6 29506941 29507014 -159772540 - MIR SINE MIR -172 90 13 2897 13 0 0 chr6 29508929 29509242 -159770312 + AluYb8 SINE Alu 1 313 -5 182 362 0 0 chr6 29509738 29509796 -159769758 - L2 LINE L2 -208 3064 3007 562 305 82 68 chr6 29510453 29510820 -159768734 - LTR67 LTR ERVL -82 475 104 560 243 5 79 chr6 29510849 29511038 -159768516 + LTR16A LTR ERVL 18 192 -258 510 286 122 71 chr6 29511990 29512497 -159767057 + MER4-int LTR ERV1 6140 6672 -450 262 176 0 20 chr6 29512761 29512812 -159766742 + MER4-int LTR ERV1 4194 4243 -2355 2840 126 22 2 chr6 29512868 29513282 -159766272 + LTR42 LTR ERVL 41 462 -33 1474 161 4 40 chr6 29513690 29513964 -159765590 - AluJb SINE Alu -48 264 1 1859 163 83 0 chr6 29513999 29514324 -159765230 + MER65A LTR ERV1 47 398 -47 1781 97 0 0 chr6 29514325 29514551 -159765003 - AluSg/x SINE Alu -14 296 71 3222 104 36 20 chr6 29514551 29515049 -159764505 + LTR10A LTR ERV1 1 506 -103 2123 85 3 53 chr6 29515068 29515387 -159764167 - AluY SINE Alu -8 303 1 3198 80 122 11 chr6 29517000 29517460 -159762094 - MER9 LTR ERVK 0 511 1 3239 143 50 4 chr6 29517941 29518464 -159761090 + LTR10A LTR ERV1 1 547 -62 2191 105 0 26 chr6 29519065 29519371 -159760183 + AluSg SINE Alu 1 298 -12 25 31 0 0 chr6 29519912 29519944 -159759610 + AT_rich Low_complexity Low_complexity 1 32 0 199 280 13 53 chr6 29519973 29520048 -159759506 + L2 LINE L2 3201 3272 0 2283 77 38 0 chr6 29521133 29521420 -159758134 + AluY SINE Alu 1 298 -13 224 30 30 0 chr6 29521921 29521954 -159757600 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2238 92 0 0 chr6 29521957 29522238 -159757316 - AluSg SINE Alu -29 281 1 27 0 0 0 chr6 29524210 29524237 -159755317 + AT_rich Low_complexity Low_complexity 1 27 0 540 242 53 0 chr6 29525407 29525539 -159754015 - MIR SINE MIR -106 156 18 266 293 41 16 chr6 29526703 29526826 -159752728 - MER65A LTR ERV1 -317 128 3 1289 180 64 97 chr6 29528786 29529159 -159750395 + MLT1A2 LTR MaLR 1 361 -13 3062 135 14 0 chr6 29530036 29530458 -159749096 + MSTA LTR MaLR 1 428 0 345 333 14 14 chr6 29530876 29531017 -159748537 - MIR SINE MIR -44 218 78 808 221 96 66 chr6 29531139 29531674 -159747880 + LTR48B LTR ERV1 1 542 0 1700 231 38 58 chr6 29532315 29532761 -159746793 + MER45B DNA AcHobo 1 437 -603 2455 65 3 3 chr6 29532768 29533076 -159746478 + AluY SINE Alu 1 308 -3 962 122 86 46 chr6 29533084 29533281 -159746273 + LTR49-int LTR ERV1 2919 3123 -3208 1219 150 37 61 chr6 29533310 29533556 -159745998 + LTR49-int LTR ERV1 3109 3348 -2983 678 191 16 24 chr6 29533603 29533729 -159745825 + LTR49-int LTR ERV1 3353 3477 -2854 429 180 0 0 chr6 29533748 29533809 -159745745 + AluJ/FLAM SINE Alu 7 67 -245 2216 128 6 12 chr6 29533811 29534148 -159745406 + L1P3 LINE L1 786 1120 -4755 833 120 0 24 chr6 29534145 29534270 -159745284 - L1P3 LINE L1 -6306 155 34 * 3469 222 16 44 chr6 29534255 29535227 -159744327 + L1P3 LINE L1 1169 2113 -4348 1818 124 18 0 chr6 29535213 29535487 -159744067 - L1P LINE L1 -3261 2885 2607 * 12030 100 14 5 chr6 29535489 29537932 -159741622 + L1PA8 LINE L1 3705 6159 -13 5476 126 79 69 chr6 29538018 29539214 -159740340 + LTR49-int LTR ERV1 3712 4918 -1413 228 190 51 51 chr6 29540324 29540403 -159739151 - MIR SINE MIR -4 258 180 753 186 52 6 chr6 29540438 29540610 -159738944 + L1MD3 LINE L1 7806 7985 -10 1210 174 57 112 chr6 29540839 29541138 -159738416 + MER110A LTR ERV1 39 306 -162 6573 21 1 0 chr6 29541138 29541893 -159737661 + L1PA3 LINE L1 5396 6151 -4 1210 174 57 112 chr6 29541893 29542048 -159737506 + MER110A LTR ERV1 306 468 0 2368 95 0 7 chr6 29542784 29543090 -159736464 - AluSx SINE Alu -8 304 1 829 300 150 6 chr6 29543235 29543658 -159735896 - L2 LINE L2 0 3272 2782 574 128 0 12 chr6 29543671 29543757 -159735797 + FLAM_A SINE Alu 31 115 -27 343 280 40 48 chr6 29544270 29544395 -159735159 + L2 LINE L2 2951 3074 -198 1758 122 74 37 chr6 29544688 29545040 -159734514 + THE1C LTR MaLR 6 370 -5 46 54 0 0 chr6 29545705 29545779 -159733775 + AT_rich Low_complexity Low_complexity 1 74 0 223 256 0 0 chr6 29545900 29545939 -159733615 - MIR SINE MIR -207 55 17 272 327 126 57 chr6 29546037 29546196 -159733358 - MER5B DNA MER1_type -16 173 4 372 286 67 43 chr6 29546304 29546932 -159732622 - L1MEd LINE L1 -770 1720 981 219 69 0 0 chr6 29547677 29547706 -159731848 + (T)n Simple_repeat Simple_repeat 1 29 0 2128 153 17 42 chr6 29548051 29548455 -159731099 + MSTD LTR MaLR 3 396 0 2024 134 16 0 chr6 29550012 29550319 -159729235 + AluSx SINE Alu 1 312 0 1620 191 3 63 chr6 29551250 29551569 -159727985 + AluJo SINE Alu 1 300 -12 2099 140 5 40 chr6 29552103 29552250 -159727304 - LTR29 LTR ERV1 -235 387 236 2499 69 0 3 chr6 29552250 29552555 -159726999 - AluSp SINE Alu -9 304 1 2099 140 5 40 chr6 29552555 29552806 -159726748 - LTR29 LTR ERV1 -386 236 3 1495 122 55 11 chr6 29552806 29553065 -159726489 - LTR24B LTR ERV1 -286 290 17 1967 110 45 3 chr6 29553065 29553357 -159726197 - AluSc SINE Alu -5 304 1 1495 122 55 11 chr6 29553357 29553368 -159726186 - LTR24B LTR ERV1 -559 17 8 516 170 40 0 chr6 29553718 29553818 -159725736 + MLT1A1 LTR MaLR 1 104 -261 * 837 231 50 36 chr6 29553815 29554118 -159725436 + LTR48B LTR ERV1 338 644 0 597 111 0 0 chr6 29554260 29554341 -159725213 - AluSg/x SINE Alu -16 293 213 1785 133 0 11 chr6 29554342 29554606 -159724948 - AluSx SINE Alu -51 261 1 30 0 0 0 chr6 29555598 29555628 -159723926 + AT_rich Low_complexity Low_complexity 1 30 0 2270 95 10 3 chr6 29555657 29555952 -159723602 - AluSg SINE Alu -13 297 1 240 305 39 18 chr6 29556641 29556873 -159722681 + L1M1 LINE L1 5497 5735 -568 21 0 0 0 chr6 29557046 29557067 -159722487 + AT_rich Low_complexity Low_complexity 1 21 0 200 182 0 0 chr6 29557212 29557245 -159722309 + GA-rich Low_complexity Low_complexity 3 35 0 228 35 0 0 chr6 29557433 29557462 -159722092 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1900 136 0 21 chr6 29557475 29557755 -159721799 - AluSx SINE Alu -38 274 1 282 336 39 0 chr6 29557963 29558091 -159721463 - MIR SINE MIR -26 236 104 186 176 0 0 chr6 29558136 29558187 -159721367 + T-rich Low_complexity Low_complexity 1 51 0 288 0 0 0 chr6 29559206 29559238 -159720316 + (TA)n Simple_repeat Simple_repeat 1 32 0 28 61 0 0 chr6 29559593 29559642 -159719912 + AT_rich Low_complexity Low_complexity 1 49 0 1809 201 53 54 chr6 29560401 29560594 -159718960 + MER44D DNA MER2_type 1 193 -2294 1285 98 53 114 chr6 29560594 29560839 -159718715 + MER30 DNA MER1_type 1 230 0 1809 201 53 54 chr6 29560839 29561196 -159718358 + MER44D DNA MER2_type 193 605 0 2339 82 13 0 chr6 29561672 29561978 -159717576 + AluSp SINE Alu 1 310 -3 285 98 0 0 chr6 29563475 29563516 -159716038 + (CA)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chr6 29563932 29563959 -159715595 + (CA)n Simple_repeat Simple_repeat 2 28 0 2327 89 3 3 chr6 29564307 29564609 -159714945 + AluSx SINE Alu 1 302 -10 896 195 11 26 chr6 29565005 29565195 -159714359 - MER5A DNA MER1_type -2 187 1 2130 130 0 7 chr6 29565665 29565964 -159713590 - AluSx SINE Alu -15 297 1 5423 119 20 19 chr6 29565983 29567687 -159711867 - L1PA16 LINE L1 0 6166 4445 2150 66 3 78 chr6 29567687 29568007 -159711547 - AluY SINE Alu -15 296 1 5423 119 20 19 chr6 29568007 29568330 -159711224 - L1PA16 LINE L1 -1721 4445 4124 216 372 67 16 chr6 29568333 29568645 -159710909 + L3 LINE CR1 430 757 -820 501 343 60 29 chr6 29568785 29569132 -159710422 + L3 LINE CR1 1061 1418 -159 2350 67 30 3 chr6 29569359 29569656 -159709898 + AluY SINE Alu 1 305 -6 32 0 0 0 chr6 29569851 29569883 -159709671 + AT_rich Low_complexity Low_complexity 1 32 0 330 172 26 73 chr6 29570046 29570191 -159709363 - LTR49 LTR ERV1 -16 740 508 3018 157 20 4 chr6 29570193 29570697 -159708857 - MER41E LTR ERV1 0 512 1 698 202 69 95 chr6 29570852 29571226 -159708328 - LTR49 LTR ERV1 -292 303 5 229 121 0 0 chr6 29571197 29571230 -159708324 - MER34B LTR ERV1 -532 33 1 * 212 350 10 29 chr6 29571271 29571374 -159708180 - MIR SINE MIR -6 256 156 1387 162 128 25 chr6 29571377 29571566 -159707988 + LTR49 LTR ERV1 1 169 -453 1486 190 35 10 chr6 29571566 29571856 -159707698 - AluJo SINE Alu -11 301 5 1387 162 128 25 chr6 29571856 29572148 -159707406 + LTR49 LTR ERV1 169 609 -13 2146 98 23 10 chr6 29573125 29573431 -159706123 - AluSx SINE Alu -2 310 1 1093 161 92 65 chr6 29574097 29574253 -159705301 - AluJo SINE Alu -2 300 131 2039 81 53 3 chr6 29574253 29574538 -159705016 - AluSc SINE Alu -10 299 1 1093 161 92 65 chr6 29574538 29574673 -159704881 - AluJo SINE Alu -171 131 1 2098 123 7 3 chr6 29576323 29576631 -159702923 - AluSg1 SINE Alu 0 309 1 485 172 86 66 chr6 29578219 29578337 -159701217 - MLT1B LTR MaLR -236 154 31 1688 124 113 15 chr6 29578337 29578611 -159700943 - AluSg SINE Alu -9 301 1 485 172 86 66 chr6 29578611 29578643 -159700911 - MLT1B LTR MaLR -359 31 1 494 287 24 0 chr6 29578834 29578998 -159700556 - Charlie8 DNA MER1_type -1955 462 295 407 100 17 0 chr6 29579696 29579756 -159699798 - U7 snRNA snRNA -1 62 2 22 0 0 0 chr6 29579756 29579778 -159699776 + AT_rich Low_complexity Low_complexity 1 22 0 3502 115 28 48 chr6 29579813 29580492 -159699062 + MER39B LTR ERV1 1 643 -10 1587 175 52 3 chr6 29580515 29580806 -159698748 - AluJb SINE Alu -7 305 1 325 311 0 0 chr6 29580827 29580917 -159698637 + MER34 LTR ERV1 1 90 -452 260 228 44 95 chr6 29580914 29581072 -159698482 + LTR48 LTR ERV1 160 309 -478 * 1967 186 37 16 chr6 29581687 29581872 -159697682 - MER65A LTR ERV1 0 445 265 4390 103 62 57 chr6 29581872 29582647 -159696907 + MER4E LTR ERV1 1 779 0 1967 186 37 16 chr6 29582647 29582897 -159696657 - MER65A LTR ERV1 -180 265 1 1543 115 9 5 chr6 29583251 29583469 -159696085 + AluSg/x SINE Alu 74 292 -20 336 328 61 40 chr6 29583789 29583987 -159695567 - L2 LINE L2 -10 3303 3102 1243 175 45 84 chr6 29584024 29584333 -159695221 + AluJo SINE Alu 1 297 -15 37 0 0 0 chr6 29584333 29584370 -159695184 + AT_rich Low_complexity Low_complexity 1 37 0 650 0 0 0 chr6 29584683 29584755 -159694799 - tRNA-Met-i tRNA tRNA -3 72 1 637 0 0 0 chr6 29585098 29585169 -159694385 - tRNA-Gly-GGC tRNA tRNA -3 71 1 216 189 0 0 chr6 29585577 29585614 -159693940 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 207 0 0 0 chr6 29585615 29585638 -159693916 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 2103 104 3 10 chr6 29585641 29585930 -159693624 - AluSx SINE Alu -24 288 2 388 202 21 0 chr6 29585933 29586027 -159693527 - L1MEc LINE L1 -4027 2369 2274 810 240 124 103 chr6 29586574 29587058 -159692496 + MLT1D LTR MaLR 12 505 0 209 237 0 0 chr6 29587199 29587237 -159692317 - L3 LINE CR1 -23 1554 1517 21 0 0 0 chr6 29588213 29588234 -159691320 + AT_rich Low_complexity Low_complexity 1 21 0 305 261 14 0 chr6 29589194 29589263 -159690291 - MIR SINE MIR 0 262 193 2235 111 0 0 chr6 29589390 29589687 -159689867 + AluSc SINE Alu 1 297 -12 36 40 0 0 chr6 29589747 29589797 -159689757 + AT_rich Low_complexity Low_complexity 1 50 0 304 323 71 35 chr6 29589886 29590112 -159689442 - L1M4 LINE L1 -2547 3599 3366 498 313 58 26 chr6 29590115 29590428 -159689126 - L1M4 LINE L1 -2839 3307 2985 2366 88 0 3 chr6 29591644 29591940 -159687614 - AluSc SINE Alu -14 295 1 255 219 125 55 chr6 29592129 29592257 -159687297 - L1ME LINE L1 -426 5695 5559 1599 155 115 57 chr6 29592410 29592835 -159686719 - LTR7 LTR ERV1 0 450 1 321 286 41 34 chr6 29592850 29592997 -159686557 - L1ME LINE L1 -808 5338 5191 448 241 0 75 chr6 29593112 29593245 -159686309 + L2 LINE L2 2622 2744 -570 971 182 0 27 chr6 29593245 29593432 -159686122 + FRAM SINE Alu 1 176 0 900 300 101 14 chr6 29593445 29593840 -159685714 + L2 LINE L2 2746 3213 -100 321 26 0 0 chr6 29593840 29593878 -159685676 + (CA)n Simple_repeat Simple_repeat 1 38 0 900 300 101 14 chr6 29593878 29593975 -159685579 + L2 LINE L2 3213 3300 -13 714 279 150 26 chr6 29594002 29594454 -159685100 + L1MC4a LINE L1 5433 5940 -1868 270 333 31 0 chr6 29595200 29595296 -159684258 - MIR SINE MIR 0 262 164 252 0 0 0 chr6 29595404 29595432 -159684122 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 577 279 62 75 chr6 29595990 29596392 -159683162 + L3 LINE CR1 1102 1498 -79 1156 153 190 4 chr6 29596393 29596672 -159682882 - MER33 DNA MER1_type -1 323 1 240 234 31 0 chr6 29596682 29596746 -159682808 + L3 LINE CR1 1509 1574 -3 1742 197 56 19 chr6 29597427 29597803 -159681751 - MLT1B LTR MaLR 0 390 1 866 182 0 0 chr6 29598331 29598463 -159681091 - FLAM_C SINE Alu 0 133 2 282 342 36 27 chr6 29598478 29598589 -159680965 - L2 LINE L2 0 3272 3161 323 272 12 0 chr6 29598840 29598921 -159680633 + MER5A DNA MER1_type 108 189 0 243 250 0 75 chr6 29600452 29600532 -159679022 + MIR SINE MIR 82 155 -107 1197 176 9 27 chr6 29600735 29600957 -159678597 + AluJo SINE Alu 81 298 -14 494 125 164 29 chr6 29601143 29601237 -159678317 - MER3 DNA MER1_type -13 149 38 1520 134 134 4 chr6 29601237 29601498 -159678056 - AluSx SINE Alu -17 295 1 1489 166 20 71 chr6 29601820 29602116 -159677438 - AluJo SINE Alu -31 281 1 1334 146 127 8 chr6 29602650 29602903 -159676651 - MER1B DNA MER1_type -1 338 56 201 254 18 18 chr6 29602937 29602992 -159676562 - L2 LINE L2 -3 3310 3256 206 118 0 0 chr6 29603475 29603509 -159676045 + (A)n Simple_repeat Simple_repeat 1 34 0 1247 108 29 117 chr6 29604258 29604498 -159675056 - MER20 DNA MER1_type 0 219 1 2181 90 23 19 chr6 29604576 29604886 -159674668 + AluSp SINE Alu 1 311 -2 361 183 247 11 chr6 29605166 29605259 -159674295 + MER3 DNA MER1_type 38 152 -57 * 1211 162 141 18 chr6 29605254 29605594 -159673960 + MER3 DNA MER1_type 2232 2613 0 818 319 161 10 chr6 29605624 29606034 -159673520 - L2 LINE L2 -341 2973 2502 321 218 26 0 chr6 29606076 29606154 -159673400 - MER116 DNA Mariner 0 80 1 902 228 44 5 chr6 29606440 29606646 -159672908 + MIR SINE MIR 21 234 -28 488 291 14 30 chr6 29607713 29607902 -159671652 + MIR SINE MIR 21 205 -57 1068 207 126 59 chr6 29608832 29609269 -159670285 - LTR40a LTR ERVL -12 507 1 27 81 0 0 chr6 29609313 29609375 -159670179 + AT_rich Low_complexity Low_complexity 1 62 0 744 181 103 25 chr6 29609674 29609992 -159669562 - L1ME LINE L1 -698 5468 5128 1973 141 10 0 chr6 29610182 29610481 -159669073 - AluJb SINE Alu -10 302 1 1531 119 82 101 chr6 29610985 29611303 -159668251 + AluJo SINE Alu 1 312 0 595 145 0 0 chr6 29613677 29613760 -159665794 + 7SLRNA srpRNA srpRNA 217 299 -21 24 0 0 0 chr6 29613760 29613784 -159665770 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr6 29614004 29614028 -159665526 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr6 29614037 29614077 -159665477 + AT_rich Low_complexity Low_complexity 1 40 0 2544 47 0 0 chr6 29614959 29615255 -159664299 + AluY SINE Alu 1 296 -15 956 179 80 47 chr6 29615278 29615490 -159664064 - MER20 DNA MER1_type 0 219 1 1094 248 62 58 chr6 29615708 29616156 -159663398 - MLT1C LTR MaLR -14 453 4 2951 212 145 25 chr6 29616637 29617790 -159661764 + L1ME LINE L1 4470 5770 -396 325 173 0 0 chr6 29617805 29617857 -159661697 - L1ME1 LINE L1 -232 5934 5883 195 363 89 17 chr6 29618173 29618352 -159661202 - L2 LINE L2 -2054 1260 1069 302 361 69 0 chr6 29619195 29619339 -159660215 - MIR SINE MIR -74 188 35 682 37 0 0 chr6 29620024 29620106 -159659448 - L1PA2 LINE L1 0 6155 6074 2476 192 102 65 chr6 29620164 29620965 -159658589 - L1MC4 LINE L1 -180 7862 7032 1164 223 148 31 chr6 29622028 29622473 -159657081 - L1MC4 LINE L1 -98 7710 7334 1940 83 0 0 chr6 29622549 29622790 -159656764 + AluY SINE Alu 1 241 -70 1295 209 8 0 chr6 29622790 29623039 -159656515 - L1MC4 LINE L1 -1097 6945 6695 1366 160 9 0 chr6 29623043 29623255 -159656299 + MLT1A1 LTR MaLR 147 360 -5 861 124 0 15 chr6 29624290 29624427 -159655127 - Tigger5 DNA MER2_type -143 2180 2046 180 0 0 0 chr6 29624831 29624851 -159654703 + (A)n Simple_repeat Simple_repeat 1 20 0 2225 119 0 0 chr6 29625230 29625523 -159654031 + AluSx SINE Alu 1 293 -19 1578 114 30 25 chr6 29625835 29626072 -159653482 - AluSx SINE Alu -74 238 1 597 217 29 7 chr6 29626078 29626216 -159653338 - L1MC4 LINE L1 -1036 7006 6866 326 159 48 0 chr6 29630294 29630357 -159649197 - MARNA DNA Mariner -23 563 498 273 265 195 25 chr6 29630408 29630608 -159648946 + MARNA DNA Mariner 170 403 -183 260 184 0 0 chr6 29631229 29631267 -159648287 - 5S rRNA rRNA -83 38 1 724 232 168 5 chr6 29631913 29631986 -159647568 - MIR SINE MIR 0 262 202 2774 71 22 25 chr6 29631986 29632351 -159647203 - THE1B LTR MaLR 0 364 1 724 232 168 5 chr6 29632351 29632497 -159647057 - MIR SINE MIR -60 202 7 433 291 61 102 chr6 29633916 29634425 -159645129 + L2 LINE L2 2817 3304 -9 845 139 21 93 chr6 29634746 29634889 -159644665 + MER20 DNA MER1_type 36 163 -56 180 111 0 0 chr6 29634889 29634916 -159644638 + (CCCCCG)n Simple_repeat Simple_repeat 3 29 0 845 139 21 93 chr6 29634916 29634966 -159644588 + MER20 DNA MER1_type 163 215 -4 1211 163 143 43 chr6 29635645 29635903 -159643651 + AluJo SINE Alu 3 286 -26 488 181 254 0 chr6 29637924 29638062 -159641492 + MIR SINE MIR 69 241 -21 2400 76 0 0 chr6 29638716 29639007 -159640547 - AluSg SINE Alu -19 291 1 414 293 179 33 chr6 29639022 29639480 -159640074 - L1M4 LINE L1 -1066 5080 4556 304 311 30 15 chr6 29639970 29640105 -159639449 + CT-rich Low_complexity Low_complexity 1 137 0 807 182 105 8 chr6 29640303 29640518 -159639036 - L1MC3 LINE L1 -290 7518 7269 22 35 0 0 chr6 29641013 29641042 -159638512 + AT_rich Low_complexity Low_complexity 1 29 0 989 181 0 0 chr6 29641084 29641244 -159638310 - AluJb SINE Alu -5 307 148 191 282 154 0 chr6 29643174 29643252 -159636302 - L2 LINE L2 -932 2382 2293 1672 202 7 0 chr6 29643347 29643654 -159635900 - AluJo SINE Alu -3 309 1 631 199 76 6 chr6 29645142 29645313 -159634241 + LTR40c LTR ERVL 5 187 -278 2225 252 89 24 chr6 29645365 29645927 -159633627 - L1M4 LINE L1 -860 5286 4762 2454 226 79 12 chr6 29645927 29646572 -159632982 + MER76 LTR ERV 1 688 0 2225 252 89 24 chr6 29646572 29647141 -159632413 - L1M4 LINE L1 -1384 4762 4081 302 301 0 0 chr6 29647354 29647427 -159632127 - MER2 DNA MER2_type -1 344 272 201 74 0 0 chr6 29647438 29647465 -159632089 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 964 149 96 5 chr6 29647705 29647893 -159631661 - MER2 DNA MER2_type -139 206 2 559 267 0 14 chr6 29647898 29648044 -159631510 + MER82 DNA MER2_type 1 144 -509 731 169 23 0 chr6 29648129 29648259 -159631295 + FLAM_C SINE Alu 1 133 0 1399 82 0 0 chr6 29648482 29648653 -159630901 - AluSp SINE Alu -7 306 136 1278 178 55 4 chr6 29648759 29649034 -159630520 + MER82 DNA MER2_type 202 490 -163 1198 202 184 28 chr6 29649042 29649478 -159630076 - MLT1D LTR MaLR -1 504 1 335 284 63 0 chr6 29649779 29649906 -159629648 - L1ME3A LINE L1 -9 6161 6027 369 199 154 7 chr6 29649925 29650061 -159629493 - L1ME3A LINE L1 -203 5967 5812 1741 201 0 0 chr6 29650704 29651012 -159628542 - AluSx SINE Alu -4 308 1 252 0 0 0 chr6 29651791 29651819 -159627735 + (A)n Simple_repeat Simple_repeat 1 28 0 307 333 0 0 chr6 29652334 29652415 -159627139 + L2 LINE L2 3186 3266 -6 289 276 26 60 chr6 29652402 29652518 -159627036 + L3 LINE CR1 532 643 -934 * 302 293 77 58 chr6 29652713 29652921 -159626633 - L1ME3A LINE L1 -350 5820 5609 895 227 153 109 chr6 29653264 29653400 -159626154 - L2 LINE L2 -341 2973 2844 2179 132 7 0 chr6 29653400 29653710 -159625844 + AluSx SINE Alu 1 312 0 895 227 153 109 chr6 29653710 29654070 -159625484 - L2 LINE L2 -470 2844 2455 1628 164 14 38 chr6 29654074 29654367 -159625187 + AluJb SINE Alu 1 286 -26 235 201 90 118 chr6 29654400 29654544 -159625010 - L2 LINE L2 -855 2459 2320 1748 141 29 58 chr6 29654742 29655054 -159624500 - AluJb SINE Alu -9 303 1 2074 73 62 4 chr6 29656082 29656356 -159623198 + AluSc SINE Alu 1 290 -19 444 260 125 45 chr6 29656452 29656797 -159622757 + L1MEd LINE L1 955 1370 -4759 1908 152 31 0 chr6 29656797 29657086 -159622468 - AluJb SINE Alu -13 299 2 444 260 125 45 chr6 29657086 29657283 -159622271 + L1MEd LINE L1 1370 1550 -4579 443 246 8 39 chr6 29657315 29657430 -159622124 + L1MEc LINE L1 729 841 -5766 1442 226 56 86 chr6 29657430 29657951 -159621603 - MLT1D LTR MaLR 0 505 1 443 246 8 39 chr6 29657951 29657965 -159621589 + L1MEc LINE L1 841 854 -5753 868 174 0 128 chr6 29657987 29658033 -159621521 - MLT1A2 LTR MaLR -160 214 164 2636 58 0 0 chr6 29658033 29658344 -159621210 + AluY SINE Alu 1 311 0 868 174 0 128 chr6 29658344 29658539 -159621015 - MLT1A2 LTR MaLR -210 164 4 1782 169 248 6 chr6 29658543 29659063 -159620491 + L1MEc LINE L1 1249 1894 -4532 952 79 39 0 chr6 29659064 29659191 -159620363 + AluSp SINE Alu 1 132 -181 2255 95 7 0 chr6 29659194 29659499 -159620055 + AluY SINE Alu 2 308 -3 342 313 18 49 chr6 29659506 29659669 -159619885 - L1ME4a LINE L1 -95 6026 5869 254 262 105 38 chr6 29659792 29660002 -159619552 - L1MC5 LINE L1 -427 7534 7311 938 268 51 65 chr6 29660069 29660898 -159618656 - L1MC4 LINE L1 -672 7370 6536 783 309 148 31 chr6 29661228 29662026 -159617528 - L1MEc LINE L1 -3176 2970 2114 185 247 0 32 chr6 29662033 29662126 -159617428 + (CATATA)n Simple_repeat Simple_repeat 4 93 0 1534 235 108 16 chr6 29662212 29662655 -159616899 - MLT1E LTR MaLR 0 593 110 1843 175 58 26 chr6 29665166 29665594 -159613960 + MER63 DNA MER1_type 475 916 -144 943 140 40 7 chr6 29665608 29665758 -159613796 + FRAM SINE Alu 1 153 -23 251 204 230 0 chr6 29665760 29665873 -159613681 + MER63 DNA MER1_type 922 1060 -1 282 202 3 3 chr6 29665875 29665947 -159613607 - L1MC4 LINE L1 -343 5823 5767 * 1823 181 25 0 chr6 29665939 29666304 -159613250 - L1MD1 LINE L1 -273 6363 5990 194 0 39 0 chr6 29666304 29666330 -159613224 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1899 121 15 0 chr6 29666335 29666599 -159612955 - AluSx SINE Alu -44 268 1 1309 49 6 0 chr6 29666635 29666797 -159612757 + AluY SINE Alu 147 309 -2 1102 199 107 28 chr6 29666803 29667339 -159612215 - L1MD1 LINE L1 -650 5986 5417 979 198 0 17 chr6 29667348 29667520 -159612034 - AluJb SINE Alu -2 310 142 598 174 17 26 chr6 29667532 29667647 -159611907 - AluJo SINE Alu -101 211 98 1538 144 98 0 chr6 29667720 29667984 -159611570 + AluJo SINE Alu 1 290 -22 2742 207 63 50 chr6 29668001 29668110 -159611444 - L1MD1 LINE L1 -2663 3877 3771 1632 169 14 20 chr6 29668110 29668406 -159611148 + AluJo SINE Alu 3 296 -16 2742 207 63 50 chr6 29668406 29669435 -159610119 - L1MD1 LINE L1 -2769 3771 2757 2237 110 0 0 chr6 29669435 29669725 -159609829 - AluSx SINE Alu -22 290 1 2185 127 0 0 chr6 29669733 29670024 -159609530 - AluSx SINE Alu -21 291 1 2742 207 63 50 chr6 29670024 29670472 -159609082 - L1MD1 LINE L1 -3789 2751 2310 1404 189 89 0 chr6 29670472 29670643 -159608911 - AluJo SINE Alu -7 305 98 198 0 0 0 chr6 29670643 29670665 -159608889 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1404 189 89 0 chr6 29670665 29670773 -159608781 - AluJo SINE Alu -214 98 1 2742 207 63 50 chr6 29670773 29672702 -159606852 - L1MD1 LINE L1 -4230 2310 1 268 167 14 56 chr6 29673724 29673796 -159605758 + L2 LINE L2 2430 2498 -816 559 279 59 44 chr6 29673863 29674067 -159605487 - L2 LINE L2 -1 3312 3106 2439 127 30 48 chr6 29674113 29674547 -159605007 - MSTB LTR MaLR 0 426 1 27 0 0 0 chr6 29674755 29674782 -159604772 + AT_rich Low_complexity Low_complexity 1 27 0 588 163 0 0 chr6 29674782 29674874 -159604680 - Tigger7 DNA MER2_type 0 2491 2400 * 2904 175 23 2 chr6 29674868 29675382 -159604172 - Tigger7 DNA MER2_type -1961 526 2 3585 161 14 3 chr6 29675385 29676043 -159603511 - L1MB2 LINE L1 -22 6149 5485 609 58 0 0 chr6 29676076 29676162 -159603392 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 180 111 0 0 chr6 29676318 29676345 -159603209 + (TGG)n Simple_repeat Simple_repeat 1 27 0 3438 226 21 16 chr6 29677642 29678001 -159601553 - MER21B LTR ERV1 -21 842 486 503 0 0 31 chr6 29678001 29678065 -159601489 + (TTATA)n Simple_repeat Simple_repeat 5 66 0 3438 226 21 16 chr6 29678065 29678474 -159601080 - MER21B LTR ERV1 -377 486 70 394 253 11 0 chr6 29678510 29678597 -159600957 - MER21B LTR ERV1 -757 106 19 1702 180 51 18 chr6 29678616 29679293 -159600261 + L1MC1 LINE L1 1437 2243 -4183 1954 87 0 20 chr6 29679293 29679547 -159600007 + AluSc SINE Alu 54 302 -7 1702 180 51 18 chr6 29679547 29679625 -159599929 + L1MC1 LINE L1 2243 2317 -4109 4831 147 53 17 chr6 29679625 29680500 -159599054 + L1MC1 LINE L1 5702 6607 -6 246 156 0 0 chr6 29680619 29680664 -159598890 + (CA)n Simple_repeat Simple_repeat 2 46 0 261 287 43 9 chr6 29683034 29683226 -159596328 + MIR SINE MIR 3 262 0 355 283 65 7 chr6 29683736 29683874 -159595680 - L1MC5 LINE L1 -51 7910 7765 196 385 44 7 chr6 29684899 29685034 -159594520 + L2 LINE L2 2337 2476 -838 563 200 9 9 chr6 29685034 29685144 -159594410 + MER81 DNA DNA 5 114 0 502 335 37 0 chr6 29685172 29685360 -159594194 + L2 LINE L2 2521 2715 -599 205 241 145 0 chr6 29685564 29685647 -159593907 + L2 LINE L2 1906 2000 -1314 305 316 5 87 chr6 29686124 29686186 -159593368 - L1MC4a LINE L1 -1897 5911 5846 2144 116 3 0 chr6 29686186 29686479 -159593075 + AluSx SINE Alu 1 294 -18 305 316 5 87 chr6 29686479 29686612 -159592942 - L1MC4a LINE L1 -1962 5846 5732 213 65 0 0 chr6 29686815 29686846 -159592708 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1770 135 10 17 chr6 29686849 29687138 -159592416 - AluJb SINE Alu -25 287 1 189 276 80 80 chr6 29687775 29687938 -159591616 + MIR SINE MIR 56 218 -44 736 12 0 0 chr6 29688004 29688086 -159591468 + tRNA-Ser-AGC tRNA tRNA 1 82 -3 265 219 85 0 chr6 29688954 29689036 -159590518 + L1MC4a LINE L1 5854 5942 -1866 2086 129 0 3 chr6 29689589 29689912 -159589642 + AluSx SINE Alu 1 312 0 512 200 357 7 chr6 29689943 29690083 -159589471 + MER5A DNA MER1_type 1 189 0 455 220 46 0 chr6 29690604 29690713 -159588841 - LTR65 LTR ERV1 -506 163 50 183 42 0 0 chr6 29690742 29690766 -159588788 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 265 191 147 0 chr6 29690911 29690979 -159588575 + MER53 DNA DNA 1 78 -111 351 0 0 0 chr6 29691832 29691871 -159587683 + (CA)n Simple_repeat Simple_repeat 1 39 0 202 172 0 35 chr6 29692513 29692571 -159586983 + T-rich Low_complexity Low_complexity 5 60 0 509 268 155 36 chr6 29694091 29694285 -159585269 + L1MC/D LINE L1 5600 5816 -1992 1688 156 0 66 chr6 29694418 29694738 -159584816 + AluSx SINE Alu 1 299 -13 966 223 93 40 chr6 29694870 29695170 -159584384 + MER46C DNA MER2_type 1 316 -22 5401 138 32 22 chr6 29695188 29696092 -159583462 - MER49 LTR ERV1 -8 915 3 582 262 97 0 chr6 29696104 29696341 -159583213 - L1MC5 LINE L1 -83 7878 7619 24 0 0 0 chr6 29696399 29696423 -159583131 + AT_rich Low_complexity Low_complexity 1 24 0 201 74 0 0 chr6 29696529 29696556 -159582998 + (A)n Simple_repeat Simple_repeat 1 27 0 551 322 34 0 chr6 29696623 29696828 -159582726 - HERVL LTR ERVL -1236 4418 4207 789 250 16 21 chr6 29696960 29697148 -159582406 - LTR39 LTR ERV1 0 783 597 1292 149 12 132 chr6 29697224 29697404 -159582150 - LTR39 LTR ERV1 -482 301 180 2982 6 0 0 chr6 29697404 29697722 -159581832 - AluYb8 SINE Alu 0 318 1 1292 149 12 132 chr6 29697722 29697883 -159581671 - LTR39 LTR ERV1 -603 180 1 460 202 65 65 chr6 29697886 29698054 -159581500 - HERVL LTR ERVL -1674 4090 3923 684 122 37 18 chr6 29698054 29698218 -159581336 + CT-rich Low_complexity Low_complexity 2 168 0 1446 117 57 45 chr6 29699192 29699456 -159580098 + AluJo SINE Alu 1 267 -45 338 202 0 11 chr6 29699551 29699640 -159579914 + GA-rich Low_complexity Low_complexity 3 90 0 237 298 58 94 chr6 29700766 29700957 -159578597 - MER5A DNA MER1_type 0 189 6 343 200 60 20 chr6 29701049 29701149 -159578405 + MIR SINE MIR 86 189 -73 338 272 49 103 chr6 29701482 29701618 -159577936 - MIR SINE MIR -79 183 58 875 213 24 12 chr6 29701618 29701782 -159577772 + FRAM SINE Alu 1 166 0 338 272 49 103 chr6 29701782 29701829 -159577725 - MIR SINE MIR -204 58 10 21 0 0 0 chr6 29701950 29701971 -159577583 + AT_rich Low_complexity Low_complexity 1 21 0 587 275 39 64 chr6 29703062 29703211 -159576343 + MIR SINE MIR 8 150 -112 1615 190 62 32 chr6 29703211 29703585 -159575969 - MLT1B LTR MaLR -4 386 2 587 275 39 64 chr6 29703585 29703668 -159575886 + MIR SINE MIR 150 234 -28 220 147 0 0 chr6 29704416 29704450 -159575104 - L2 LINE L2 -6 3307 3274 269 294 27 41 chr6 29704666 29704812 -159574742 - L1ME4a LINE L1 -43 6078 5935 2541 66 0 0 chr6 29704822 29705124 -159574430 - AluY SINE Alu -9 302 1 751 306 61 48 chr6 29705582 29705958 -159573596 - L2 LINE L2 -34 3279 2899 3481 146 11 30 chr6 29705977 29706433 -159573121 - MER44D DNA MER2_type -1883 604 105 1950 99 81 32 chr6 29706433 29706716 -159572838 + AluSg SINE Alu 2 298 -12 3481 146 11 30 chr6 29706716 29706819 -159572735 - MER44D DNA MER2_type -2382 105 1 2058 137 3 0 chr6 29707017 29707316 -159572238 + AluSx SINE Alu 1 300 -12 25 0 0 0 chr6 29708365 29708390 -159571164 + AT_rich Low_complexity Low_complexity 1 25 0 276 288 18 45 chr6 29708664 29708775 -159570779 - MIR SINE MIR -66 196 89 473 204 62 0 chr6 29708794 29708907 -159570647 - L1MD3 LINE L1 -1 7994 7875 1499 168 45 17 chr6 29709214 29709505 -159570049 + AluJo SINE Alu 2 300 -12 3245 71 2 7 chr6 29710003 29710423 -159569131 - MER4E LTR ERV1 0 766 349 1064 214 106 101 chr6 29710928 29711372 -159568182 - LTR16A1 LTR ERVL -3 454 9 2257 149 87 21 chr6 29711472 29711964 -159567590 - Tigger3(Golem) DNA MER2_type -16 3013 94 725 313 94 3 chr6 29712454 29712796 -159566758 - L1M4 LINE L1 -1920 4226 3854 1775 123 115 7 chr6 29712886 29713155 -159566399 - AluSg1 SINE Alu -11 298 1 277 301 131 35 chr6 29713155 29713437 -159566117 - L1M4 LINE L1 -3569 2577 2269 2889 147 19 2 chr6 29713526 29713947 -159565607 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr6 29713994 29714015 -159565539 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 29714161 29714192 -159565362 + AT_rich Low_complexity Low_complexity 1 31 0 205 178 0 44 chr6 29714626 29714671 -159564883 + (TTA)n Simple_repeat Simple_repeat 1 43 0 500 45 0 15 chr6 29714939 29715005 -159564549 - L1PA15 LINE L1 -4 6161 6097 988 259 66 54 chr6 29715064 29715381 -159564173 - L2 LINE L2 -473 2841 2521 244 289 144 10 chr6 29715425 29715522 -159564032 + L2 LINE L2 3160 3269 -3 207 0 0 0 chr6 29717724 29717747 -159561807 + (CA)n Simple_repeat Simple_repeat 2 24 0 2174 136 0 0 chr6 29718622 29718932 -159560622 - AluSx SINE Alu -2 310 1 355 321 67 21 chr6 29721404 29721597 -159557957 + MIR3 SINE MIR 3 204 -4 250 191 21 0 chr6 29721670 29721717 -159557837 - L2 LINE L2 -16 3256 3209 1692 174 13 7 chr6 29723514 29723824 -159555730 + AluSx SINE Alu 1 312 0 579 238 101 5 chr6 29724219 29724408 -159555146 + L2 LINE L2 3106 3312 -1 248 241 92 11 chr6 29724857 29724944 -159554610 - MIR SINE MIR -21 241 148 2446 79 0 3 chr6 29725031 29725336 -159554218 - AluSp SINE Alu -9 304 1 433 242 20 0 chr6 29725351 29725450 -159554104 - MIR SINE MIR -155 107 7 381 256 23 23 chr6 29725526 29725659 -159553895 + MIR SINE MIR 124 256 -6 221 315 72 9 chr6 29725725 29725836 -159553718 - MIR SINE MIR -59 149 32 1879 224 75 13 chr6 29725960 29726438 -159553116 + Charlie4a DNA MER1_type 1 508 0 465 184 98 110 chr6 29727952 29728115 -159551439 + MIR SINE MIR 78 238 -24 577 197 33 25 chr6 29728540 29728662 -159550892 + MER5B DNA MER1_type 2 124 -54 1036 150 0 6 chr6 29728665 29728832 -159550722 - AluSx SINE Alu -5 305 140 689 105 0 0 chr6 29728832 29728918 -159550636 - AluSx SINE Alu -226 87 2 203 250 0 0 chr6 29728919 29728959 -159550595 + MER5B DNA MER1_type 132 171 -7 253 235 59 0 chr6 29728963 29729031 -159550523 + L1MC5 LINE L1 7372 7443 -518 3038 170 6 8 chr6 29729032 29729519 -159550035 - MER66B LTR ERV1 0 486 1 3821 119 17 0 chr6 29729519 29730056 -159549498 - MER66B-int LTR ERV1 0 6676 6131 2587 174 28 2 chr6 29730063 29730493 -159549061 - MER66-int LTR ERV1 -3892 2784 2344 2259 195 46 2 chr6 29730498 29730908 -159548646 - MER66-int LTR ERV1 -4514 2162 1735 344 240 39 10 chr6 29730912 29731016 -159548538 + L1MC4 LINE L1 7790 7896 -146 1581 184 3 32 chr6 29731107 29731423 -159548131 + AluJb SINE Alu 1 307 -5 1242 215 24 0 chr6 29731747 29731993 -159547561 + MER58 DNA MER1_type 1 252 -2168 674 109 12 260 chr6 29731991 29732152 -159547402 + MER58 DNA MER1_type 2166 2201 -219 * 2787 84 21 8 chr6 29732152 29732531 -159547023 + L1PA8 LINE L1 5785 6168 -4 674 109 12 260 chr6 29732531 29732707 -159546847 + MER58 DNA MER1_type 2201 2419 -1 1514 169 48 14 chr6 29733463 29733753 -159545801 + AluJo SINE Alu 1 300 -12 219 189 0 0 chr6 29735014 29735067 -159544487 + GA-rich Low_complexity Low_complexity 2 54 0 269 379 17 0 chr6 29736229 29736345 -159543209 - MLT1K LTR MaLR -292 296 179 630 202 37 0 chr6 29736680 29736789 -159542765 + FLAM_C SINE Alu 3 115 -28 432 0 0 0 chr6 29736789 29736837 -159542717 + (CA)n Simple_repeat Simple_repeat 1 48 0 1834 137 24 27 chr6 29736839 29737248 -159542306 - LTR46 LTR ERV1 0 460 1 387 293 50 0 chr6 29737726 29737866 -159541688 - L1MC4a LINE L1 -1894 5914 5768 463 274 145 36 chr6 29738051 29738299 -159541255 - L2 LINE L2 -22 3291 3017 428 233 82 65 chr6 29738357 29738602 -159540952 - L1MC4a LINE L1 -2297 5511 5263 633 216 0 0 chr6 29738850 29738961 -159540593 + AluJb SINE Alu 194 304 -8 646 134 0 31 chr6 29739730 29739827 -159539727 + FRAM SINE Alu 64 157 -19 352 324 94 0 chr6 29740630 29740800 -159538754 + L2 LINE L2 3119 3304 -9 1459 150 0 13 chr6 29740832 29741059 -159538495 + AluJb SINE Alu 7 230 -82 617 115 15 85 chr6 29741065 29741195 -159538359 + AluJb SINE Alu 191 311 -1 724 261 93 19 chr6 29741659 29741874 -159537680 - MIR SINE MIR -29 233 3 1659 217 92 31 chr6 29742372 29742851 -159536703 + Charlie4a DNA MER1_type 1 508 0 1114 198 25 33 chr6 29743825 29744004 -159535550 + MLT1E2 LTR MaLR 386 564 -62 2145 120 13 28 chr6 29744004 29744321 -159535233 - AluSx SINE Alu 0 312 1 1114 198 25 33 chr6 29744321 29744384 -159535170 + MLT1E2 LTR MaLR 564 626 0 586 242 155 0 chr6 29744382 29744576 -159534978 - MER2 DNA MER2_type 0 345 122 * 875 171 0 19 chr6 29744577 29744735 -159534819 + FRAM SINE Alu 1 154 -22 694 186 23 16 chr6 29744736 29744865 -159534689 - MER2 DNA MER2_type -215 130 1 533 226 266 23 chr6 29745500 29745677 -159533877 + MIR SINE MIR 15 234 -28 980 263 138 19 chr6 29745677 29745996 -159533558 + LTR18A LTR ERVL 1 357 0 1500 197 13 16 chr6 29746002 29746307 -159533247 + HERVL18 LTR ERVL 1 304 -5743 1467 197 19 4 chr6 29746289 29746558 -159532996 + HERVL18 LTR ERVL 492 764 -5283 * 499 206 0 0 chr6 29746565 29746657 -159532897 + HERVL18 LTR ERVL 871 962 -5085 * 1171 172 3 16 chr6 29746644 29747006 -159532548 + HERVL18 LTR ERVL 1390 1810 -4237 * 1485 136 23 12 chr6 29747005 29747303 -159532251 + HERVL18 LTR ERVL 2119 2477 -3570 * 5473 161 15 8 chr6 29747277 29748135 -159531419 + HERVL18 LTR ERVL 2718 3581 -2466 629 130 11 0 chr6 29748135 29748227 -159531327 + HERVL18 LTR ERVL 4394 4486 -1561 257 339 0 0 chr6 29748229 29748288 -159531266 + HERVL18 LTR ERVL 5209 5267 -780 2428 149 196 40 chr6 29748531 29749062 -159530492 + LTR18B LTR ERVL 1 614 0 280 332 187 21 chr6 29749126 29749361 -159530193 + L2 LINE L2 2122 2395 -919 2467 80 0 19 chr6 29749660 29749973 -159529581 + AluSc SINE Alu 1 307 -2 672 199 5 108 chr6 29750295 29750380 -159529174 + MER5B DNA MER1_type 5 62 -116 1488 153 18 0 chr6 29750380 29750602 -159528952 + AluSx SINE Alu 3 228 -84 672 199 5 108 chr6 29750602 29750702 -159528852 + MER5B DNA MER1_type 62 171 -7 563 221 45 111 chr6 29750705 29751154 -159528400 + L1MC5 LINE L1 7375 7793 -168 262 199 35 28 chr6 29751193 29751334 -159528220 + GA-rich Low_complexity Low_complexity 5 146 0 337 214 34 43 chr6 29751338 29751455 -159528099 + L1MC5 LINE L1 7810 7925 -36 318 275 99 8 chr6 29751758 29751889 -159527665 + L1MC4a LINE L1 6441 6583 -1225 855 224 20 5 chr6 29752310 29752506 -159527048 - MIR SINE MIR -52 210 12 261 57 0 0 chr6 29752810 29752845 -159526709 + (CA)n Simple_repeat Simple_repeat 1 35 0 312 273 67 34 chr6 29753131 29753340 -159526214 + L1MC4a LINE L1 5871 6086 -1722 417 197 0 34 chr6 29753663 29753841 -159525713 + (TA)n Simple_repeat Simple_repeat 2 173 0 247 143 5 102 chr6 29753832 29754028 -159525526 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 * 1173 296 67 48 chr6 29754080 29755214 -159524340 + L1MC/D LINE L1 4532 5676 -553 438 213 64 176 chr6 29755214 29755676 -159523878 - L2 LINE L2 -17 3296 2834 384 341 66 2 chr6 29755691 29755961 -159523593 - LTR16A LTR ERVL -51 399 73 2156 112 3 29 chr6 29756270 29756584 -159522970 + AluSx SINE Alu 1 306 -6 986 295 97 87 chr6 29756610 29757754 -159521800 - HERVL LTR ERVL -550 5104 3634 1857 160 3 49 chr6 29757754 29758079 -159521475 - AluSx SINE Alu -2 310 1 986 295 97 87 chr6 29758079 29758505 -159521049 - HERVL LTR ERVL -2020 3634 3214 2578 291 70 54 chr6 29758745 29759099 -159520455 - HERVL LTR ERVL -2158 2838 2491 2282 64 61 10 chr6 29759099 29759395 -159520159 + AluY SINE Alu 1 311 0 2578 291 70 54 chr6 29759395 29760193 -159519361 - HERVL LTR ERVL -2505 2491 1667 842 312 54 9 chr6 29760218 29760535 -159519019 - HERVL LTR ERVL -3933 1063 733 690 325 50 14 chr6 29760568 29760848 -159518706 - HERVL LTR ERVL -4343 653 364 465 271 0 8 chr6 29760979 29761097 -159518457 + LTR40c LTR ERVL 3 119 -346 868 335 65 29 chr6 29761097 29761338 -159518216 - L1M3c LINE L1 -5701 440 176 1843 209 19 8 chr6 29761338 29761697 -159517857 + MLT1A1 LTR MaLR 3 365 0 868 335 65 29 chr6 29761697 29761870 -159517684 - L1M3c LINE L1 -5965 176 11 627 239 36 112 chr6 29761875 29762268 -159517286 + L1MEc LINE L1 1704 2156 -4451 2507 109 33 14 chr6 29762268 29762636 -159516918 - THE1C LTR MaLR 0 375 1 627 239 36 112 chr6 29762636 29762691 -159516863 + L1MEc LINE L1 2156 2214 -4393 311 194 0 0 chr6 29762721 29762783 -159516771 + L1MEc LINE L1 2205 2266 -4341 355 252 71 47 chr6 29762838 29762965 -159516589 + MER69 DNA AcHobo 1 130 -1096 605 249 51 55 chr6 29762985 29763202 -159516352 + MER69 DNA AcHobo 51 266 -960 1916 192 76 25 chr6 29763214 29763339 -159516215 + MER69 DNA AcHobo 1458 1575 -951 1911 118 33 0 chr6 29763339 29763610 -159515944 + AluSx SINE Alu 1 280 -32 1916 192 76 25 chr6 29763610 29764296 -159515258 + MER69 DNA AcHobo 1575 2384 -142 744 201 49 42 chr6 29764297 29764441 -159515113 + FRAM SINE Alu 1 143 -33 1602 183 56 0 chr6 29764526 29764810 -159514744 - AluSx SINE Alu -12 300 1 407 189 9 66 chr6 29764810 29764832 -159514722 + MER69 DNA AcHobo 2396 2418 -108 1488 185 61 14 chr6 29764832 29765148 -159514406 - AluJo SINE Alu 0 312 1 407 189 9 66 chr6 29765148 29765231 -159514323 + MER69 DNA AcHobo 2418 2495 -31 246 366 89 0 chr6 29765246 29765369 -159514185 + L2 LINE L2 3180 3313 0 511 335 67 0 chr6 29765413 29765592 -159513962 + L2 LINE L2 2553 2743 -571 4573 144 24 34 chr6 29767011 29767807 -159511747 - LTR25 LTR ERV1 -6 788 1 244 281 110 61 chr6 29768020 29768365 -159511189 - L1MC5 LINE L1 -237 7724 7363 672 304 118 38 chr6 29768978 29769620 -159509934 + L2 LINE L2 2637 3311 -2 341 274 53 0 chr6 29770334 29770429 -159509125 - MIR SINE MIR -11 251 152 308 282 0 13 chr6 29770890 29770968 -159508586 - L2 LINE L2 0 3313 3237 1327 106 6 0 chr6 29772254 29772433 -159507121 - MER46A DNA MER2_type 0 236 57 339 257 188 93 chr6 29772496 29772979 -159506575 - MLT1H LTR MaLR 0 549 21 1462 215 19 48 chr6 29773710 29774001 -159505553 - MLT1F1 LTR MaLR 0 542 174 9476 54 1 1 chr6 29774001 29775072 -159504482 + MER11C LTR ERVK 1 1071 0 1462 215 19 48 chr6 29775072 29775191 -159504363 - MLT1F1 LTR MaLR -368 174 53 915 256 14 5 chr6 29775589 29775808 -159503746 + MIR SINE MIR 5 225 -37 530 268 174 14 chr6 29777797 29778010 -159501544 + MIR SINE MIR 16 262 0 407 268 143 42 chr6 29778358 29778526 -159501028 - MER5A DNA MER1_type -1 188 4 940 244 76 60 chr6 29779515 29779884 -159499670 - L2 LINE L2 -6 3307 2933 250 304 70 47 chr6 29779927 29780098 -159499456 - MIR SINE MIR -76 186 12 267 204 0 19 chr6 29780345 29780399 -159499155 + MIR SINE MIR 67 119 -89 815 226 70 5 chr6 29780943 29781129 -159498425 - MIR SINE MIR 0 262 65 1721 181 68 64 chr6 29781176 29781661 -159497893 - L1MC5 LINE L1 -842 7119 6633 1755 234 97 28 chr6 29781755 29782220 -159497334 - MLT1E LTR MaLR 0 593 97 390 136 11 23 chr6 29782584 29782672 -159496882 + CT-rich Low_complexity Low_complexity 4 90 0 243 88 0 0 chr6 29782672 29782706 -159496848 + (TCCCC)n Simple_repeat Simple_repeat 5 38 0 2178 127 7 0 chr6 29782721 29783029 -159496525 - AluSx SINE Alu -2 310 1 2278 91 0 0 chr6 29783872 29784157 -159495397 - AluSc SINE Alu -24 285 1 2387 85 0 0 chr6 29784535 29784828 -159494726 - AluSc SINE Alu -16 293 1 243 0 0 0 chr6 29785806 29785833 -159493721 + (TG)n Simple_repeat Simple_repeat 2 28 0 307 282 0 0 chr6 29786130 29786208 -159493346 - MLT1E LTR MaLR -515 78 1 506 279 74 67 chr6 29786315 29786630 -159492924 - L1ME LINE L1 -599 5571 5255 262 203 31 0 chr6 29786636 29786700 -159492854 + (TA)n Simple_repeat Simple_repeat 1 66 0 264 68 0 0 chr6 29789178 29789266 -159490288 - Alu SINE Alu 0 343 256 207 0 0 0 chr6 29789434 29789457 -159490097 + (CAA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr6 29790067 29790090 -159489464 + (A)n Simple_repeat Simple_repeat 1 23 0 243 0 0 0 chr6 29790405 29790432 -159489122 + (CA)n Simple_repeat Simple_repeat 2 28 0 14409 183 34 7 chr6 29790645 29797113 -159482441 + L1PB1 LINE L1 1 6861 -6 281 231 179 0 chr6 29797998 29798076 -159481478 + MIR SINE MIR 63 154 -108 361 223 78 78 chr6 29798232 29798398 -159481156 - MLT1J LTR MaLR -4 507 342 2199 103 10 0 chr6 29800071 29800361 -159479193 + AluSc SINE Alu 1 293 -16 2397 105 0 0 chr6 29802901 29803206 -159476348 - AluSg SINE Alu -5 305 1 1263 130 97 5 chr6 29804318 29804534 -159475020 - MER46A DNA MER2_type 0 236 1 261 0 0 0 chr6 29805081 29805110 -159474444 + (A)n Simple_repeat Simple_repeat 1 29 0 1427 161 96 0 chr6 29805310 29805559 -159473995 + AluJo SINE Alu 37 309 -3 589 254 32 53 chr6 29806210 29806399 -159473155 + MER20B DNA MER1_type 27 211 -572 14507 117 35 24 chr6 29807091 29809482 -159470072 - Tigger1 DNA MER2_type -1 2417 1 940 227 10 76 chr6 29809538 29809686 -159469868 - MLT1C LTR MaLR 0 467 346 2379 91 7 0 chr6 29809686 29809993 -159469561 + AluSc SINE Alu 1 309 0 940 227 10 76 chr6 29809993 29810135 -159469419 - MLT1C LTR MaLR -121 346 196 9024 193 29 24 chr6 29810233 29812531 -159467023 - L1 LINE L1 -1490 6075 3469 1732 179 3 3 chr6 29812531 29812832 -159466722 + AluJb SINE Alu 1 301 -11 9024 193 29 24 chr6 29812832 29813140 -159466414 - L1 LINE L1 -4096 3469 3164 692 182 0 0 chr6 29813197 29813307 -159466247 - AluJb SINE Alu -200 112 3 2150 219 38 0 chr6 29813312 29813893 -159465661 - L1 LINE L1 -4390 3175 2573 2083 99 19 22 chr6 29813905 29814218 -159465336 - AluSq SINE Alu -1 312 1 828 135 0 23 chr6 29814220 29814353 -159465201 - AluJo/FLAM SINE Alu -172 130 1 824 188 56 47 chr6 29814404 29814638 -159464916 + MSTB2 LTR MaLR 222 457 0 428 200 22 0 chr6 29814638 29814728 -159464826 - MLT1C LTR MaLR -375 92 1 472 210 139 46 chr6 29814894 29815132 -159464422 + MER20B DNA MER1_type 518 777 -6 198 219 24 0 chr6 29816566 29816607 -159462947 - MIR SINE MIR -155 107 66 979 120 86 14 chr6 29816932 29817141 -159462413 + L1MA9 LINE L1 6009 6232 -80 319 230 14 0 chr6 29817410 29817484 -159462070 - L2 LINE L2 -19 3294 3220 2389 196 87 12 chr6 29817529 29818106 -159461448 + L1MC4 LINE L1 7218 7850 -192 1638 132 0 53 chr6 29818106 29818387 -159461167 + AluJo SINE Alu 1 266 -46 2389 196 87 12 chr6 29818387 29818456 -159461098 + L1MC4 LINE L1 7850 7912 -130 356 211 53 11 chr6 29818554 29818649 -159460905 + L1MC4 LINE L1 7943 8041 -1 554 255 150 39 chr6 29819560 29819824 -159459730 + MLT1H LTR MaLR 35 327 -222 300 255 148 27 chr6 29819850 29819999 -159459555 + MLT1H LTR MaLR 379 545 -4 278 327 122 11 chr6 29820022 29820285 -159459269 + L2 LINE L2 2150 2441 -873 187 354 162 10 chr6 29820590 29820689 -159458865 - L2 LINE L2 -6 3266 3153 180 329 0 85 chr6 29821566 29821648 -159457906 - L2 LINE L2 -81 3191 3117 242 224 17 17 chr6 29821779 29821837 -159457717 + L2 LINE L2 3256 3313 0 440 251 193 20 chr6 29821861 29822156 -159457398 - L1MC4a LINE L1 -1892 5916 5571 3053 116 53 2 chr6 29822319 29822837 -159456717 - L1MC1 LINE L1 -559 5774 5231 3135 117 48 27 chr6 29822837 29822890 -159456664 + L1MC1 LINE L1 5776 5826 -507 2035 148 0 6 chr6 29822890 29823201 -159456353 + AluSx SINE Alu 1 309 -3 3135 117 48 27 chr6 29823201 29823301 -159456253 + L1MC1 LINE L1 5826 5923 -410 1766 133 78 35 chr6 29823301 29823500 -159456054 - MER46B DNA MER2_type -2495 236 139 2213 117 0 0 chr6 29823500 29823791 -159455763 - AluSx SINE Alu -21 291 1 1766 133 78 35 chr6 29823791 29823937 -159455617 - MER46B DNA MER2_type -2592 139 1 3135 117 48 27 chr6 29823937 29824329 -159455225 + L1MC1 LINE L1 5923 6333 0 621 298 27 13 chr6 29824348 29824647 -159454907 + L1ME LINE L1 5458 5760 -361 242 276 132 0 chr6 29825004 29825080 -159454474 - L2 LINE L2 -5 3267 3182 292 159 48 0 chr6 29825576 29825639 -159453915 - MER103 DNA DNA -76 90 25 268 333 62 23 chr6 29827131 29827260 -159452294 + MIR3 SINE MIR 32 165 -43 321 324 82 46 chr6 29827293 29827512 -159452042 + L2 LINE L2 3043 3269 -3 1754 149 4 11 chr6 29828178 29828447 -159451107 - AluJo SINE Alu -23 289 23 251 268 201 6 chr6 29828674 29828853 -159450701 - L2 LINE L2 -2 3311 3098 1623 186 7 10 chr6 29828907 29829214 -159450340 + AluJo SINE Alu 1 306 -6 2205 121 0 3 chr6 29829360 29829666 -159449888 - AluSg1 SINE Alu -4 305 1 614 155 31 0 chr6 29829687 29829784 -159449770 - FRAM SINE Alu -47 129 30 539 213 0 29 chr6 29829891 29830027 -159449527 + L1ME1 LINE L1 6030 6161 -5 300 171 102 0 chr6 29831205 29831293 -159448261 + L1MC4 LINE L1 7095 7191 -851 1091 165 263 4 chr6 29831297 29831579 -159447975 + AluJo SINE Alu 1 343 0 615 210 133 0 chr6 29831803 29831984 -159447570 + MIR SINE MIR 3 207 -55 281 318 132 31 chr6 29832028 29832286 -159447268 - L2 LINE L2 -1328 1986 1703 * 393 278 106 13 chr6 29832280 29832431 -159447123 + L2 LINE L2 2196 2360 -954 1501 85 0 5 chr6 29832782 29832971 -159446583 + AluSg/x SINE Alu 102 289 -23 1803 195 12 80 chr6 29833007 29833520 -159446034 + MLT2B1 LTR ERVL 1 478 -42 361 258 37 6 chr6 29833571 29833734 -159445820 + (TA)n Simple_repeat Simple_repeat 2 169 0 2151 131 0 0 chr6 29833797 29834095 -159445459 - AluSx SINE Alu -14 298 1 315 350 182 21 chr6 29834194 29834523 -159445031 + L2 LINE L2 2418 2799 -515 274 333 0 24 chr6 29834552 29834678 -159444876 + L2 LINE L2 2897 3019 -253 516 269 19 13 chr6 29834686 29834842 -159444712 - MIR SINE MIR -28 234 78 1401 241 82 48 chr6 29834878 29835497 -159444057 + L2 LINE L2 2439 3075 -238 245 29 29 0 chr6 29835938 29835972 -159443582 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 4006 129 19 3 chr6 29836397 29837031 -159442523 + L1PA15 LINE L1 5522 6165 0 372 309 39 62 chr6 29838078 29838334 -159441220 + L1MC/D LINE L1 3826 4075 -2071 408 225 91 57 chr6 29839328 29839537 -159440017 + L1MC/D LINE L1 5296 5511 -2297 293 301 66 22 chr6 29940679 29940815 -159338739 + MIR SINE MIR 58 199 -63 300 308 92 34 chr6 29941461 29941935 -159337619 - L1MC/D LINE L1 -515 5727 5255 1570 139 68 4 chr6 29943834 29944100 -159335454 - AluJb SINE Alu -1 311 29 838 278 90 34 chr6 29945493 29945849 -159333705 - L2 LINE L2 0 3313 2938 488 227 133 0 chr6 29945861 29946011 -159333543 - L2 LINE L2 -1206 2108 1939 640 234 15 0 chr6 29946481 29946618 -159332936 + MIR SINE MIR 102 240 -22 522 302 90 19 chr6 29946709 29947086 -159332468 + L1MC/D LINE L1 4645 5048 -1098 567 261 105 4 chr6 29947215 29947453 -159332101 + L1MC/D LINE L1 5254 5515 -2293 232 243 27 40 chr6 29947453 29947527 -159332027 - MER76 LTR ERV -3 685 613 781 51 0 0 chr6 29947527 29947625 -159331929 + L1P LINE L1 1 98 -6048 * 4962 75 178 10 chr6 29947592 29948390 -159331164 + L1P LINE L1 578 1509 -4637 * 13292 23 0 2 chr6 29948385 29949920 -159329634 - L1P LINE L1 -802 5344 3813 925 340 66 42 chr6 29950222 29951197 -159328357 - ERVL LTR ERVL -1290 4195 3195 345 261 50 1 chr6 29951234 29951329 -159328225 - ERVL LTR ERVL -1901 3095 3010 297 312 9 46 chr6 29951329 29951438 -159328116 - LTR16A LTR ERVL -143 307 203 797 320 53 14 chr6 29951738 29952127 -159327427 + MLT1H LTR MaLR 1 442 -107 1498 296 90 12 chr6 29952203 29952927 -159326627 + L1M4 LINE L1 3600 4379 -1767 821 118 0 0 chr6 29953495 29953605 -159325949 + AluSg/x SINE Alu 185 294 -16 7392 174 25 73 chr6 29953617 29954685 -159324869 - L1MC4a LINE L1 -195 7613 6664 213 39 0 0 chr6 29954685 29954711 -159324843 + (TG)n Simple_repeat Simple_repeat 1 26 0 7392 174 25 73 chr6 29954711 29955440 -159324114 - L1MC4a LINE L1 -1144 6664 5902 2126 136 0 25 chr6 29955462 29955778 -159323776 + AluSx SINE Alu 5 312 0 1896 112 59 24 chr6 29955778 29956065 -159323489 - THE1B LTR MaLR -67 297 1 13135 84 1 0 chr6 29956065 29957644 -159321910 - THE1B-int LTR MaLR 0 1580 1 2435 101 72 20 chr6 29957644 29957990 -159321564 - THE1B LTR MaLR 0 364 1 219 319 43 0 chr6 29958121 29958190 -159321364 - MIR SINE MIR -20 242 171 24 32 0 0 chr6 29959814 29959845 -159319709 + AT_rich Low_complexity Low_complexity 1 31 0 209 189 0 0 chr6 29960622 29960659 -159318895 + (TG)n Simple_repeat Simple_repeat 1 37 0 242 355 133 15 chr6 29962802 29963005 -159316549 + MIR SINE MIR 31 257 -5 24 53 0 0 chr6 29963006 29963044 -159316510 + AT_rich Low_complexity Low_complexity 1 38 0 1979 127 0 48 chr6 29964400 29964714 -159314840 - AluSx SINE Alu -11 301 3 1675 164 25 7 chr6 29966203 29966478 -159313076 + AluJo SINE Alu 1 280 -32 603 116 27 0 chr6 29966478 29966590 -159312964 + GA-rich Low_complexity Low_complexity 4 118 0 243 0 0 0 chr6 29967896 29967923 -159311631 + (A)n Simple_repeat Simple_repeat 1 27 0 2117 99 31 17 chr6 29968056 29968348 -159311206 - AluSx SINE Alu -16 296 1 243 322 51 99 chr6 29969119 29969411 -159310143 - L2 LINE L2 -1 3271 2994 258 217 0 0 chr6 29969822 29969868 -159309686 + tRNA-Ser-AGC tRNA tRNA 33 78 -7 690 27 0 0 chr6 29970323 29970397 -159309157 - tRNA-Gln-CAA tRNA tRNA -1 74 1 506 272 70 6 chr6 29970483 29970641 -159308913 + MER20B DNA MER1_type 5 172 -611 232 211 77 0 chr6 29970783 29970835 -159308719 - L2 LINE L2 -511 2803 2748 1431 235 95 28 chr6 29970835 29971226 -159308328 + MLT1G LTR MaLR 172 588 -2 4269 71 15 121 chr6 29971259 29971377 -159308177 + MER4A LTR ERV1 2 131 -533 477 0 0 0 chr6 29971377 29971430 -159308124 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 4269 71 15 121 chr6 29971430 29971446 -159308108 + MER4A LTR ERV1 131 147 -517 885 97 8 15 chr6 29971446 29971580 -159307974 + FLAM_C SINE Alu 1 133 0 4269 71 15 121 chr6 29971580 29972186 -159307368 + MER4A LTR ERV1 147 664 0 672 294 162 20 chr6 29972736 29973138 -159306416 + L2 LINE L2 2843 3301 -12 2149 114 0 0 chr6 29973307 29973608 -159305946 - AluSx SINE Alu 0 301 1 259 367 23 8 chr6 29973624 29973752 -159305802 - MIR SINE MIR -65 197 68 205 51 51 0 chr6 29973811 29973850 -159305704 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2207 98 16 13 chr6 29974216 29974522 -159305032 + AluSx SINE Alu 1 307 -5 2377 82 0 13 chr6 29974616 29974921 -159304633 + AluSx SINE Alu 1 301 -11 5511 74 25 3 chr6 29974970 29975646 -159303908 + LTR8 LTR ERV1 1 691 0 2150 96 7 0 chr6 29976057 29976376 -159303178 + AluSx SINE Alu 1 321 0 862 224 83 98 chr6 29976489 29976887 -159302667 + MSTD LTR MaLR 1 392 -4 2201 95 0 26 chr6 29977326 29977631 -159301923 - AluSx SINE Alu -15 297 1 2230 80 13 10 chr6 29977636 29977935 -159301619 - AluSp SINE Alu -13 300 1 306 0 0 0 chr6 29977963 29977997 -159301557 + (CA)n Simple_repeat Simple_repeat 1 34 0 1630 234 25 0 chr6 29978121 29978446 -159301108 - MLT1A1 LTR MaLR -2 363 31 2305 89 13 0 chr6 29978707 29979010 -159300544 + AluSq SINE Alu 1 307 -6 261 280 0 40 chr6 29979828 29979903 -159299651 - L1MC/D LINE L1 -1907 5901 5830 768 253 15 81 chr6 29979907 29979991 -159299563 + MIR SINE MIR 4 92 -170 2225 155 117 15 chr6 29979991 29980392 -159299162 - MER65A LTR ERV1 -3 442 1 768 253 15 81 chr6 29980392 29980568 -159298986 + MIR SINE MIR 92 247 -15 644 250 159 17 chr6 29980607 29980839 -159298715 - L1MC/D LINE L1 -2023 5785 5521 1947 138 0 0 chr6 29981077 29981367 -159298187 - AluJb SINE Alu -18 294 5 532 207 165 0 chr6 29984001 29984277 -159295277 + MER33 DNA MER1_type 1 362 -1 282 304 216 6 chr6 29985723 29985894 -159293660 + L2 LINE L2 3107 3313 0 26 50 0 0 chr6 29986406 29986446 -159293108 + AT_rich Low_complexity Low_complexity 1 40 0 1704 116 0 8 chr6 29986923 29987165 -159292389 + AluSg/x SINE Alu 68 307 -3 2081 135 10 0 chr6 29987299 29987603 -159291951 + AluJo SINE Alu 1 307 -5 6003 64 21 64 chr6 29988440 29989870 -159289684 - SVA Other Other -519 867 8 287 141 16 0 chr6 29989976 29990040 -159289514 + (TA)n Simple_repeat Simple_repeat 2 66 0 1687 170 31 7 chr6 29990040 29990329 -159289225 - AluSx SINE Alu -16 296 1 361 214 16 87 chr6 29990466 29990592 -159288962 + MIR SINE MIR 77 193 -69 554 119 24 0 chr6 29990593 29990677 -159288877 + BC200 scRNA scRNA 5 90 -110 183 216 98 0 chr6 29990697 29990748 -159288806 + MIR SINE MIR 185 240 -22 236 28 56 0 chr6 29990831 29990867 -159288687 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1666 163 4 4 chr6 29990872 29991142 -159288412 - AluSx SINE Alu -42 270 1 198 212 76 45 chr6 29991642 29991708 -159287846 + MER5B DNA MER1_type 74 141 -37 693 200 103 0 chr6 29992135 29992300 -159287254 + AluJo SINE Alu 2 183 -129 28 29 0 0 chr6 29993534 29993569 -159285985 + AT_rich Low_complexity Low_complexity 1 35 0 2103 109 3 3 chr6 29993808 29994101 -159285453 - AluSc SINE Alu -14 295 3 24 32 0 0 chr6 29994185 29994216 -159285338 + AT_rich Low_complexity Low_complexity 1 31 0 2333 86 0 13 chr6 29994233 29994547 -159285007 - AluSg SINE Alu 0 310 1 513 221 130 84 chr6 29994801 29995100 -159284454 + LTR29 LTR ERV1 1 313 -309 2007 121 7 3 chr6 29995100 29995390 -159284164 + AluSq SINE Alu 6 296 -17 827 169 0 68 chr6 29995390 29995567 -159283987 + AluSg/x SINE Alu 132 296 -14 792 226 60 24 chr6 29995572 29995824 -159283730 + LTR48B LTR ERV1 348 608 -36 576 124 26 170 chr6 29995876 29996029 -159283525 + FLAM_A SINE Alu 1 131 -2 22 35 0 0 chr6 29996203 29996232 -159283322 + AT_rich Low_complexity Low_complexity 1 29 0 599 137 21 0 chr6 29996246 29996341 -159283213 + LTR29 LTR ERV1 1 97 -525 683 143 118 18 chr6 29996387 29996661 -159282893 + LTR49 LTR ERV1 227 566 -29 22 35 0 0 chr6 29997156 29997185 -159282369 + AT_rich Low_complexity Low_complexity 1 29 0 330 294 39 10 chr6 29997838 29997940 -159281614 + L2 LINE L2 3200 3304 -9 1217 157 96 9 chr6 29998165 29998394 -159281160 - AluJo SINE Alu -27 285 37 3145 153 74 38 chr6 29998403 29999035 -159280519 - MER51D LTR ERV1 -2 655 1 2056 109 14 3 chr6 30000583 30000876 -159278678 + AluSq SINE Alu 13 308 -5 765 172 0 0 chr6 30001993 30002162 -159277392 + FLAM_C SINE Alu 2 170 0 2242 112 0 3 chr6 30002409 30002713 -159276841 - AluSg SINE Alu -7 303 1 249 102 51 17 chr6 30003398 30003457 -159276097 + (TATG)n Simple_repeat Simple_repeat 2 62 0 384 111 0 0 chr6 30004288 30004351 -159275203 + (TA)n Simple_repeat Simple_repeat 1 63 0 180 0 0 0 chr6 30004435 30004455 -159275099 + (T)n Simple_repeat Simple_repeat 1 20 0 209 33 33 0 chr6 30004672 30004702 -159274852 + (TTTTTA)n Simple_repeat Simple_repeat 4 34 0 2251 115 0 0 chr6 30005035 30005330 -159274224 + AluSx SINE Alu 3 297 -15 1670 263 111 27 chr6 30005812 30006477 -159273077 - MER20B DNA MER1_type 0 783 63 2566 71 3 0 chr6 30007974 30008282 -159271272 + AluY SINE Alu 2 310 -1 555 294 129 26 chr6 30008417 30008832 -159270722 + L2 LINE L2 2565 3031 -282 220 156 44 0 chr6 30009560 30009605 -159269949 + L2 LINE L2 3267 3313 0 221 300 0 14 chr6 30009609 30009679 -159269875 + CT-rich Low_complexity Low_complexity 1 69 0 369 0 0 0 chr6 30009681 30009722 -159269832 + (CA)n Simple_repeat Simple_repeat 2 42 0 196 296 0 28 chr6 30009781 30009852 -159269702 + MIR3 SINE MIR 113 181 -27 806 206 6 12 chr6 30010103 30010268 -159269286 + FRAM SINE Alu 1 163 -13 2315 95 7 0 chr6 30010461 30010755 -159268799 + AluSp SINE Alu 1 296 -17 353 234 122 0 chr6 30013368 30013475 -159266079 + Charlie1 DNA MER1_type 8 127 -2634 1119 125 144 12 chr6 30013486 30013742 -159265812 + Charlie1 DNA MER1_type 2410 2699 -62 339 186 0 0 chr6 30013925 30013984 -159265570 + Charlie1 DNA MER1_type 2703 2761 0 753 210 63 77 chr6 30014543 30014797 -159264757 + LTR48B LTR ERV1 229 534 -110 2325 71 0 3 chr6 30014797 30015091 -159264463 - AluY SINE Alu -18 293 1 753 210 63 77 chr6 30015091 30015201 -159264353 + LTR48B LTR ERV1 534 644 0 21 0 0 0 chr6 30015534 30015555 -159263999 + AT_rich Low_complexity Low_complexity 1 21 0 2268 92 3 0 chr6 30016322 30016630 -159262924 + AluSx SINE Alu 1 309 0 233 313 52 35 chr6 30016739 30016854 -159262700 - MIR SINE MIR -85 177 61 829 125 20 120 chr6 30017726 30017819 -159261735 + MLT1B LTR MaLR 1 102 -288 2643 50 0 0 chr6 30017819 30018118 -159261436 - AluY SINE Alu -5 306 8 829 125 20 120 chr6 30018118 30018193 -159261361 + MLT1B LTR MaLR 102 149 -241 2894 19 0 0 chr6 30018193 30018509 -159261045 - AluYb8 SINE Alu -2 316 1 829 125 20 120 chr6 30018509 30018539 -159261015 + MLT1B LTR MaLR 149 180 -210 458 202 0 0 chr6 30018540 30018624 -159260930 + AluJ/FLAM SINE Alu 2 85 -227 936 154 34 69 chr6 30018657 30018973 -159260581 + MLT1B LTR MaLR 169 390 0 225 301 177 0 chr6 30019014 30019127 -159260427 + MIR SINE MIR 118 250 -12 894 257 39 63 chr6 30019826 30020238 -159259316 - MER113 DNA MER1_type? 0 521 120 1091 216 125 0 chr6 30020394 30020681 -159258873 - MER2 DNA MER2_type -4 341 19 1123 204 151 48 chr6 30020893 30021285 -159258269 - MLT1F LTR MaLR -66 476 45 2090 109 3 7 chr6 30021386 30021707 -159257847 + AluSp SINE Alu 1 320 0 768 284 69 68 chr6 30022312 30022817 -159256737 + L2 LINE L2 2776 3304 -9 2079 127 0 10 chr6 30023676 30023983 -159255571 - AluSx SINE Alu -1 311 8 1873 137 3 16 chr6 30025817 30026132 -159253422 + AluSx SINE Alu 1 311 -1 1957 139 10 7 chr6 30026135 30026445 -159253109 + AluSx SINE Alu 2 312 0 1387 182 76 4 chr6 30027402 30027677 -159251877 + AluJb SINE Alu 1 295 -17 488 230 71 0 chr6 30030273 30030386 -159249168 + MER58 DNA MER1_type 2 122 -93 1640 200 0 7 chr6 30030390 30030680 -159248874 + AluJb SINE Alu 1 288 -24 271 211 0 35 chr6 30030706 30030763 -159248791 + MER58 DNA MER1_type 2342 2396 -24 293 315 9 19 chr6 30031051 30031159 -159248395 - MIR SINE MIR -123 139 33 624 118 0 0 chr6 30031375 30031460 -159248094 - MER30B DNA MER1_type -5 185 101 301 42 21 21 chr6 30031462 30031472 -159248082 + (TTCC)n Simple_repeat Simple_repeat 3 12 -38 1855 87 116 29 chr6 30031472 30031748 -159247806 - AluSg SINE Alu -6 304 5 301 42 21 21 chr6 30031748 30031785 -159247769 + (TTCC)n Simple_repeat Simple_repeat 11 50 0 699 113 19 0 chr6 30031785 30031891 -159247663 - MER30B DNA MER1_type -78 112 5 418 253 173 19 chr6 30032450 30032612 -159246942 - L1PB4 LINE L1 -23 6133 5947 1733 90 16 12 chr6 30032632 30032888 -159246666 - AluSc SINE Alu -16 293 37 427 243 111 22 chr6 30034164 30034345 -159245209 - MER58A DNA MER1_type -1 223 27 230 26 263 0 chr6 30034851 30034889 -159244665 + LTR10B LTR ERV1 210 257 -290 1868 107 13 47 chr6 30035725 30036023 -159243531 + AluSg SINE Alu 1 288 -22 2106 92 6 78 chr6 30036300 30036635 -159242919 - AluSq SINE Alu -2 311 1 1017 83 0 0 chr6 30036637 30036769 -159242785 - AluY SINE Alu -178 133 2 328 109 0 0 chr6 30036879 30036934 -159242620 - AluJb SINE Alu 0 302 248 1127 196 0 25 chr6 30036934 30037138 -159242416 - AluJb SINE Alu -113 199 1 2868 13 0 3 chr6 30037244 30037556 -159241998 + AluYa5 SINE Alu 1 311 0 1560 173 4 4 chr6 30037711 30037977 -159241577 + AluSx SINE Alu 47 312 0 22 56 0 0 chr6 30038042 30038078 -159241476 + AT_rich Low_complexity Low_complexity 1 36 0 2334 73 0 17 chr6 30038103 30038405 -159241149 + AluSc SINE Alu 1 297 -12 645 135 19 0 chr6 30038588 30038692 -159240862 - LTR8 LTR ERV1 -23 668 563 336 158 0 40 chr6 30038693 30038769 -159240785 - LTR30 LTR ERV1 -98 624 552 3430 111 60 0 chr6 30041441 30041809 -159237745 - LTR8 LTR ERV1 -157 534 127 2005 104 0 0 chr6 30041809 30042078 -159237476 - AluSg SINE Alu -17 293 25 3430 111 60 0 chr6 30042078 30042213 -159237341 - LTR8 LTR ERV1 -564 127 1 278 98 20 0 chr6 30042422 30042473 -159237081 + (CA)n Simple_repeat Simple_repeat 1 52 0 1990 118 30 7 chr6 30042722 30043026 -159236528 - AluSx SINE Alu -1 311 1 817 219 6 0 chr6 30043077 30043241 -159236313 + FRAM SINE Alu 1 165 -1 1454 116 132 0 chr6 30043313 30043611 -159235943 - AluSp SINE Alu 0 331 1 1852 106 58 4 chr6 30043677 30043951 -159235603 - AluSx SINE Alu -23 289 1 267 128 64 0 chr6 30044024 30044071 -159235483 - LTR24C LTR ERV1 -2 633 584 736 95 0 95 chr6 30044073 30044130 -159235424 + FLAM_C SINE Alu 2 63 -249 4064 87 30 0 chr6 30044130 30044668 -159234886 + MER41A LTR ERV1 1 554 0 736 95 0 95 chr6 30044668 30044747 -159234807 + FLAM_C SINE Alu 63 125 -187 1748 149 159 25 chr6 30044756 30045158 -159234396 - LTR24C LTR ERV1 -36 599 144 * 2700 155 16 79 chr6 30045126 30045237 -159234317 - LTR29 LTR ERV1 -50 572 456 2534 66 0 3 chr6 30045237 30045540 -159234014 - AluY SINE Alu -9 302 1 2747 45 0 0 chr6 30045548 30045859 -159233695 - AluY SINE Alu 0 311 1 2700 155 16 79 chr6 30045859 30046094 -159233460 - LTR29 LTR ERV1 -173 449 268 2538 69 0 3 chr6 30046094 30046400 -159233154 - AluSp SINE Alu -8 305 1 2700 155 16 79 chr6 30046400 30046651 -159232903 - LTR29 LTR ERV1 -354 268 3 1597 126 55 11 chr6 30046651 30046910 -159232644 - LTR24B LTR ERV1 -286 290 17 1991 110 45 3 chr6 30046910 30047202 -159232352 - AluSc SINE Alu -5 304 1 1597 126 55 11 chr6 30047202 30047213 -159232341 - LTR24B LTR ERV1 -559 17 8 561 170 40 0 chr6 30047563 30047663 -159231891 + MLT1A1 LTR MaLR 1 104 -261 * 937 231 50 36 chr6 30047660 30047963 -159231591 + LTR48B LTR ERV1 338 644 0 599 121 0 0 chr6 30048103 30048186 -159231368 - AluSg/x SINE Alu -14 295 213 1772 136 0 11 chr6 30048187 30048451 -159231103 - AluSx SINE Alu -51 261 1 2372 71 30 3 chr6 30048544 30048841 -159230713 + AluY SINE Alu 1 305 -6 32 0 0 0 chr6 30049036 30049068 -159230486 + AT_rich Low_complexity Low_complexity 1 32 0 344 181 51 77 chr6 30049231 30049379 -159230175 - LTR48 LTR ERV1 -16 740 508 3073 159 20 4 chr6 30049380 30049884 -159229670 - MER41E LTR ERV1 0 512 1 816 252 86 82 chr6 30049984 30050413 -159229141 - LTR49 LTR ERV1 -160 435 5 229 121 0 0 chr6 30050384 30050417 -159229137 - MER34B LTR ERV1 -532 33 1 * 212 350 10 29 chr6 30050458 30050561 -159228993 - MIR SINE MIR -6 256 156 1387 162 128 25 chr6 30050564 30050753 -159228801 + LTR49 LTR ERV1 1 169 -453 1486 190 35 10 chr6 30050753 30051043 -159228511 - AluJo SINE Alu -11 301 5 1387 162 128 25 chr6 30051043 30051335 -159228219 + LTR49 LTR ERV1 169 609 -13 2103 100 23 10 chr6 30052312 30052613 -159226941 - AluSx SINE Alu -7 305 1 1093 161 92 65 chr6 30053279 30053435 -159226119 - AluJo SINE Alu -2 300 131 2039 81 53 3 chr6 30053435 30053720 -159225834 - AluSc SINE Alu -10 299 1 1093 161 92 65 chr6 30053720 30053855 -159225699 - AluJo SINE Alu -171 131 1 2018 134 7 3 chr6 30055505 30055810 -159223744 - AluSg1 SINE Alu -3 306 1 485 172 86 66 chr6 30057398 30057516 -159222038 - MLT1B LTR MaLR -236 154 31 1688 124 113 15 chr6 30057516 30057790 -159221764 - AluSg SINE Alu -9 301 1 485 172 86 66 chr6 30057790 30057822 -159221732 - MLT1B LTR MaLR -359 31 1 494 287 24 0 chr6 30058013 30058177 -159221377 - Charlie8 DNA MER1_type -1955 462 295 407 100 17 0 chr6 30058875 30058935 -159220619 - U7 snRNA snRNA -1 62 2 22 0 0 0 chr6 30058935 30058957 -159220597 + AT_rich Low_complexity Low_complexity 1 22 0 3502 115 28 48 chr6 30058992 30059671 -159219883 + MER39B LTR ERV1 1 643 -10 1599 172 52 3 chr6 30059694 30059985 -159219569 - AluJb SINE Alu -7 305 1 325 311 0 0 chr6 30060006 30060096 -159219458 + MER34 LTR ERV1 1 90 -452 260 228 44 95 chr6 30060093 30060251 -159219303 + LTR48 LTR ERV1 160 309 -478 * 1967 186 37 16 chr6 30060866 30061051 -159218503 - MER65A LTR ERV1 0 445 265 4405 102 62 57 chr6 30061051 30061826 -159217728 + MER4E LTR ERV1 1 779 0 1967 186 37 16 chr6 30061826 30062076 -159217478 - MER65A LTR ERV1 -180 265 1 1543 115 9 5 chr6 30062430 30062648 -159216906 + AluSg/x SINE Alu 74 292 -20 336 328 61 40 chr6 30062968 30063166 -159216388 - L2 LINE L2 -10 3303 3102 1243 175 45 84 chr6 30063203 30063512 -159216042 + AluJo SINE Alu 1 297 -15 37 0 0 0 chr6 30063512 30063549 -159216005 + AT_rich Low_complexity Low_complexity 1 37 0 650 0 0 0 chr6 30063862 30063934 -159215620 - tRNA-Met-i tRNA tRNA -3 72 1 637 0 0 0 chr6 30064277 30064348 -159215206 - tRNA-Gly-GGC tRNA tRNA -3 71 1 216 189 0 0 chr6 30064756 30064793 -159214761 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 207 0 0 0 chr6 30064794 30064817 -159214737 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 2103 104 3 10 chr6 30064820 30065109 -159214445 - AluSx SINE Alu -24 288 2 388 202 21 0 chr6 30065112 30065206 -159214348 - L1MEc LINE L1 -4027 2369 2274 810 240 124 103 chr6 30065753 30066237 -159213317 + MLT1D LTR MaLR 12 505 0 209 237 0 0 chr6 30066378 30066416 -159213138 - L3 LINE CR1 -23 1554 1517 501 343 60 29 chr6 30066770 30067117 -159212437 - L3 LINE CR1 -159 1418 1061 216 372 67 16 chr6 30067257 30067569 -159211985 - L3 LINE CR1 -820 757 430 5441 118 26 10 chr6 30067572 30067895 -159211659 + L1PA16 LINE L1 4124 4440 -1726 2150 66 3 78 chr6 30067895 30068215 -159211339 + AluY SINE Alu 1 296 -15 5441 118 26 10 chr6 30068215 30069919 -159209635 + L1PA16 LINE L1 4440 6166 0 2152 124 0 7 chr6 30069938 30070237 -159209317 + AluSx SINE Alu 1 297 -15 896 195 11 26 chr6 30070707 30070897 -159208657 + MER5A DNA MER1_type 1 187 -2 2332 90 3 3 chr6 30071293 30071594 -159207960 - AluSx SINE Alu -11 301 1 297 0 0 0 chr6 30071942 30071975 -159207579 + (TG)n Simple_repeat Simple_repeat 2 34 0 285 98 0 0 chr6 30072391 30072432 -159207122 + (TG)n Simple_repeat Simple_repeat 2 42 0 2339 82 13 0 chr6 30073929 30074235 -159205319 - AluSp SINE Alu -3 310 1 1809 201 53 54 chr6 30074711 30075068 -159204486 - MER44D DNA MER2_type -1882 605 193 1285 98 53 114 chr6 30075068 30075313 -159204241 - MER30 DNA MER1_type 0 230 1 1809 201 53 54 chr6 30075313 30075506 -159204048 - MER44D DNA MER2_type -2294 193 1 28 61 0 0 chr6 30076265 30076314 -159203240 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr6 30076663 30076685 -159202869 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr6 30077707 30077745 -159201809 + AT_rich Low_complexity Low_complexity 1 38 0 821 21 0 0 chr6 30077745 30077842 -159201712 - L1PA4 LINE L1 -3 6152 6056 440 37 0 0 chr6 30077842 30077896 -159201658 + L1PA5 LINE L1 6066 6119 -35 351 297 18 18 chr6 30077982 30078093 -159201461 + MIR SINE MIR 42 152 -56 30 0 0 0 chr6 30079296 30079326 -159200228 + AT_rich Low_complexity Low_complexity 1 30 0 2270 95 10 3 chr6 30079355 30079650 -159199904 - AluSg SINE Alu -13 297 1 240 305 39 18 chr6 30080339 30080571 -159198983 + L1M1 LINE L1 5497 5735 -568 21 0 0 0 chr6 30080744 30080765 -159198789 + AT_rich Low_complexity Low_complexity 1 21 0 200 182 0 0 chr6 30080910 30080943 -159198611 + GA-rich Low_complexity Low_complexity 3 35 0 228 35 0 0 chr6 30081131 30081160 -159198394 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1914 132 0 21 chr6 30081173 30081453 -159198101 - AluSx SINE Alu -38 274 1 282 336 39 0 chr6 30081661 30081789 -159197765 - MIR SINE MIR -26 236 104 186 176 0 0 chr6 30081834 30081885 -159197669 + T-rich Low_complexity Low_complexity 1 51 0 2762 260 94 17 chr6 30082312 30083581 -159195973 - L1MC4 LINE L1 -145 7897 6441 2110 218 61 17 chr6 30083684 30084436 -159195118 - L1ME2 LINE L1 -228 5936 5147 1215 243 92 32 chr6 30084527 30084930 -159194624 - MER69 DNA AcHobo -2099 427 1 22 0 0 0 chr6 30085073 30085095 -159194459 + AT_rich Low_complexity Low_complexity 1 22 0 901 146 70 49 chr6 30085193 30085378 -159194176 - BC200 scRNA scRNA -7 193 5 323 293 120 0 chr6 30085961 30086111 -159193443 + ERVL LTR ERVL 2323 2490 -3274 269 224 60 0 chr6 30086111 30086178 -159193376 + MER76 LTR ERV 595 665 -23 * 512 227 21 14 chr6 30086165 30086306 -159193248 + MLT1D LTR MaLR 362 503 -2 257 352 44 32 chr6 30086349 30086599 -159192955 + ERVL LTR ERVL 3007 3259 -2226 200 35 35 0 chr6 30086703 30086732 -159192822 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 223 214 18 0 chr6 30086763 30086819 -159192735 + (TA)n Simple_repeat Simple_repeat 1 57 0 7277 172 36 66 chr6 30086872 30087031 -159192523 - L1MC4a LINE L1 0 7808 7646 2036 133 0 7 chr6 30087031 30087331 -159192223 + AluSx SINE Alu 1 298 -14 7277 172 36 66 chr6 30087331 30088409 -159191145 - L1MC4a LINE L1 -162 7646 6646 213 39 0 0 chr6 30088409 30088435 -159191119 + (TG)n Simple_repeat Simple_repeat 1 26 0 7277 172 36 66 chr6 30088435 30089146 -159190408 - L1MC4a LINE L1 -1162 6646 5916 2148 136 0 25 chr6 30089186 30089502 -159190052 + AluSx SINE Alu 5 312 0 1767 112 59 24 chr6 30089502 30089789 -159189765 - THE1B LTR MaLR -67 297 1 12350 84 1 0 chr6 30089789 30091368 -159188186 - THE1B-int LTR MaLR 0 1580 1 2286 98 72 20 chr6 30091368 30091714 -159187840 - THE1B LTR MaLR 0 364 1 224 319 43 0 chr6 30091845 30091914 -159187640 - MIR SINE MIR -20 242 171 24 32 0 0 chr6 30093538 30093569 -159185985 + AT_rich Low_complexity Low_complexity 1 31 0 209 189 0 0 chr6 30094346 30094383 -159185171 + (TG)n Simple_repeat Simple_repeat 1 37 0 250 355 133 15 chr6 30096526 30096729 -159182825 + MIR SINE MIR 31 257 -5 24 53 0 0 chr6 30096730 30096768 -159182786 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr6 30098227 30098267 -159181287 + AT_rich Low_complexity Low_complexity 1 40 0 1707 116 0 8 chr6 30098744 30098986 -159180568 + AluSg/x SINE Alu 68 307 -3 2087 135 10 0 chr6 30099120 30099424 -159180130 + AluJo SINE Alu 1 307 -5 741 92 18 0 chr6 30100263 30100372 -159179182 + AluSq/x SINE Alu 1 111 -202 186 43 0 0 chr6 30100415 30100438 -159179116 + (A)n Simple_repeat Simple_repeat 1 23 0 1924 140 7 0 chr6 30101837 30102145 -159177409 - AluSx SINE Alu -2 310 1 565 247 35 29 chr6 30102146 30102316 -159177238 - MER4D LTR ERV1 -26 877 707 2009 92 7 20 chr6 30102320 30102612 -159176942 + AluSx SINE Alu 3 290 -22 2251 189 93 42 chr6 30103045 30103658 -159175896 - LTR48B LTR ERV1 0 644 1 1877 146 7 0 chr6 30103749 30104044 -159175510 + AluSx SINE Alu 1 297 -15 1734 152 3 14 chr6 30104093 30104383 -159175171 - AluJb SINE Alu -25 287 1 198 0 0 0 chr6 30104813 30104835 -159174719 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2019 122 0 10 chr6 30104835 30105123 -159174431 - AluSx SINE Alu -27 285 1 2421 73 0 0 chr6 30105578 30105881 -159173673 - AluY SINE Alu -8 303 1 2666 174 40 29 chr6 30105943 30106493 -159173061 + MER34B LTR ERV1 10 565 0 1935 103 48 3 chr6 30106722 30107012 -159172542 + AluSg SINE Alu 1 303 -7 23 97 0 0 chr6 30107186 30107258 -159172296 + AT_rich Low_complexity Low_complexity 1 72 0 1381 247 65 53 chr6 30107745 30108235 -159171319 - MER21B LTR ERV1 -123 740 245 2705 113 75 0 chr6 30108235 30108659 -159170895 - MER39B LTR ERV1 0 653 198 1970 151 0 0 chr6 30108668 30108980 -159170574 - AluSx SINE Alu 0 312 1 360 274 128 22 chr6 30109100 30109279 -159170275 + L1ME LINE L1 5465 5662 -459 28 0 0 0 chr6 30109855 30109883 -159169671 + AT_rich Low_complexity Low_complexity 1 28 0 653 191 7 22 chr6 30109933 30110069 -159169485 - AluJo SINE Alu -176 136 3 1615 102 45 4 chr6 30111058 30111302 -159168252 - AluSc SINE Alu -22 287 34 1399 188 238 0 chr6 30111370 30111791 -159167763 - L1MA9 LINE L1 -55 6257 5737 234 0 0 0 chr6 30112069 30112095 -159167459 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4510 128 40 19 chr6 30112095 30112875 -159166679 - LTR5 LTR ERVK -172 797 2 5761 69 21 72 chr6 30112876 30114764 -159164790 - SVA Other Other -519 936 8 339 265 69 29 chr6 30114836 30114938 -159164616 + L1MCa LINE L1 1959 2064 -4362 1552 172 32 7 chr6 30114938 30115223 -159164331 - AluSx SINE Alu -20 292 1 383 214 16 87 chr6 30115360 30115486 -159164068 + MIR SINE MIR 77 193 -69 531 119 24 0 chr6 30115487 30115571 -159163983 + BC200 scRNA scRNA 5 90 -110 188 216 98 0 chr6 30115591 30115642 -159163912 + MIR SINE MIR 185 240 -22 219 36 0 0 chr6 30115725 30115753 -159163801 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1578 163 4 4 chr6 30115758 30116028 -159163526 - AluSx SINE Alu -42 270 1 206 227 91 61 chr6 30116528 30116594 -159162960 + MER5B DNA MER1_type 74 141 -37 634 200 103 0 chr6 30117021 30117186 -159162368 + AluJo SINE Alu 2 183 -129 28 29 0 0 chr6 30118420 30118455 -159161099 + AT_rich Low_complexity Low_complexity 1 35 0 2001 106 3 3 chr6 30118694 30118986 -159160568 - AluSc SINE Alu -15 294 3 2193 87 0 13 chr6 30119118 30119428 -159160126 - AluSg SINE Alu -4 306 1 517 231 130 84 chr6 30119682 30119981 -159159573 + LTR29 LTR ERV1 1 313 -309 1905 121 7 3 chr6 30119981 30120271 -159159283 + AluSq SINE Alu 6 296 -17 849 169 0 68 chr6 30120271 30120448 -159159106 + AluSg/x SINE Alu 132 296 -14 780 226 60 24 chr6 30120453 30120705 -159158849 + LTR48B LTR ERV1 348 608 -36 552 94 13 188 chr6 30120774 30120923 -159158631 + FLAM_A SINE Alu 20 142 0 22 35 0 0 chr6 30121084 30121113 -159158441 + AT_rich Low_complexity Low_complexity 1 29 0 614 137 21 0 chr6 30121127 30121222 -159158332 + LTR29 LTR ERV1 1 97 -525 677 143 118 18 chr6 30121268 30121542 -159158012 + LTR49 LTR ERV1 227 566 -29 22 35 0 0 chr6 30122037 30122066 -159157488 + AT_rich Low_complexity Low_complexity 1 29 0 2051 95 7 7 chr6 30122664 30122958 -159156596 - AluSx SINE Alu -18 294 1 501 143 0 0 chr6 30123108 30123185 -159156369 - tRNA-Ser-TCA tRNA tRNA -1 84 8 1163 234 185 38 chr6 30123456 30123750 -159155804 + L2 LINE L2 968 1218 -2096 1926 92 7 33 chr6 30123750 30124054 -159155500 + AluSx SINE Alu 1 296 -16 1163 234 185 38 chr6 30124054 30124203 -159155351 + L2 LINE L2 1218 1476 -1838 461 243 140 0 chr6 30124229 30124365 -159155189 + L2 LINE L2 1884 2038 -1276 3522 177 30 8 chr6 30124366 30125151 -159154403 - L1MC1 LINE L1 -445 5888 5081 841 214 38 0 chr6 30125151 30125310 -159154244 + FRAM SINE Alu 1 162 -14 2211 80 0 10 chr6 30125795 30126095 -159153459 - AluSg SINE Alu -13 297 1 937 210 35 75 chr6 30126335 30126682 -159152872 - L1MC1 LINE L1 -1052 5094 4762 216 292 28 0 chr6 30126683 30126755 -159152799 + L2 LINE L2 2066 2139 -1175 2040 123 7 0 chr6 30126755 30127056 -159152498 - AluSx SINE Alu -9 303 1 510 276 104 31 chr6 30127056 30127219 -159152335 + L2 LINE L2 3130 3304 -9 290 325 73 8 chr6 30127246 30127369 -159152185 - MIR3 SINE MIR -63 145 15 2018 115 23 13 chr6 30127525 30127830 -159151724 - AluSx SINE Alu -3 309 2 2097 110 0 3 chr6 30128190 30128481 -159151073 - AluSg SINE Alu -20 290 1 231 262 95 0 chr6 30128492 30128576 -159150978 + LTR66 LTR ERVL 26 117 -493 295 335 71 12 chr6 30128820 30128990 -159150564 + MIR SINE MIR 6 185 -77 315 347 136 27 chr6 30129023 30129317 -159150237 - L2 LINE L2 -56 3257 2932 1998 117 0 0 chr6 30129507 30129798 -159149756 - AluSq SINE Alu -22 291 1 806 76 144 0 chr6 30129798 30129916 -159149638 - AluSq/x SINE Alu -178 135 1 1619 124 40 44 chr6 30129983 30130281 -159149273 + AluSq SINE Alu 1 297 -16 366 87 0 0 chr6 30131287 30131333 -159148221 + tRNA-Val-GTT tRNA tRNA 1 46 -30 645 27 0 0 chr6 30131766 30131839 -159147715 - tRNA-Val-GTT tRNA tRNA -3 73 1 2198 85 0 16 chr6 30132098 30132416 -159147138 + AluSp SINE Alu 1 313 0 196 333 0 0 chr6 30132430 30132490 -159147064 - L2 LINE L2 -219 3053 2994 192 40 0 0 chr6 30132509 30132534 -159147020 + (T)n Simple_repeat Simple_repeat 1 25 0 617 103 0 0 chr6 30132979 30133066 -159146488 + AluSq/x SINE Alu 37 123 -190 394 187 0 13 chr6 30133370 30133445 -159146109 + tRNA-Val-GTG tRNA tRNA 2 75 -1 2090 106 7 0 chr6 30133551 30133854 -159145700 + AluSx SINE Alu 2 306 -6 393 22 0 0 chr6 30133954 30134000 -159145554 + (CA)n Simple_repeat Simple_repeat 1 46 0 2021 65 65 4 chr6 30134409 30134685 -159144869 + AluSp SINE Alu 1 293 -20 1928 119 7 0 chr6 30134756 30135058 -159144496 - AluSx SINE Alu -8 304 1 686 0 0 0 chr6 30135355 30135429 -159144125 - tRNA-Thr-ACT tRNA tRNA -3 74 1 2254 79 3 19 chr6 30135634 30135952 -159143602 + AluSq SINE Alu 1 313 0 312 28 0 0 chr6 30136224 30136260 -159143294 + U2 snRNA snRNA 1 36 -152 1003 282 41 40 chr6 30136294 30136695 -159142859 + LTR16A LTR ERVL 51 457 0 2002 97 19 13 chr6 30136898 30137208 -159142346 + AluSx SINE Alu 1 312 0 2464 58 0 0 chr6 30137211 30137520 -159142034 + AluY SINE Alu 1 309 -2 655 14 0 0 chr6 30138848 30138922 -159140632 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 25 65 0 0 chr6 30139462 30139508 -159140046 + AT_rich Low_complexity Low_complexity 1 46 0 237 256 88 44 chr6 30139548 30139587 -159139967 - L1MC4a LINE L1 -1692 6116 6080 2270 99 0 0 chr6 30139587 30139899 -159139655 - AluSx SINE Alu 0 312 1 237 256 88 44 chr6 30139899 30140109 -159139445 - L1MC4a LINE L1 -1728 6080 5856 1842 90 4 4 chr6 30140159 30140415 -159139139 + AluSc SINE Alu 38 293 -16 279 133 0 0 chr6 30140782 30140827 -159138727 + (TG)n Simple_repeat Simple_repeat 2 46 0 406 159 29 0 chr6 30140854 30140923 -159138631 - AluSg/x SINE Alu -13 289 219 1991 119 173 31 chr6 30140935 30141105 -159138449 + LTR47A LTR ERVL 11 155 -297 1796 142 27 0 chr6 30141105 30141400 -159138154 + AluSx SINE Alu 1 303 -9 1991 119 173 31 chr6 30141400 30141616 -159137938 + LTR47A LTR ERVL 155 452 0 690 282 136 22 chr6 30141693 30142062 -159137492 + HAL1 LINE L1 1496 1906 -601 21 0 0 0 chr6 30142517 30142538 -159137016 + AT_rich Low_complexity Low_complexity 1 21 0 2044 129 0 0 chr6 30142881 30143190 -159136364 - AluSx SINE Alu 0 312 4 2183 75 7 29 chr6 30143438 30143745 -159135809 + AluSg SINE Alu 3 302 -8 2283 90 0 3 chr6 30143827 30144139 -159135415 - AluSp SINE Alu -2 311 1 2237 84 3 3 chr6 30144148 30144456 -159135098 - AluSg SINE Alu -2 308 1 219 314 0 0 chr6 30145451 30145502 -159134052 + MER5B DNA MER1_type 128 178 0 1636 134 42 0 chr6 30145875 30146136 -159133418 - AluSx SINE Alu -24 288 17 490 304 48 39 chr6 30146206 30146436 -159133118 - MIR SINE MIR -10 252 21 2240 98 0 7 chr6 30146440 30146747 -159132807 - AluSx SINE Alu -7 305 1 192 301 96 0 chr6 30147262 30147335 -159132219 - L2 LINE L2 -287 3026 2947 2214 90 0 7 chr6 30147511 30147812 -159131742 + AluSg SINE Alu 9 307 -3 2230 47 3 72 chr6 30147833 30148153 -159131401 + AluY SINE Alu 2 299 -12 2064 117 0 0 chr6 30148297 30148595 -159130959 - AluSx SINE Alu -14 298 1 402 222 94 71 chr6 30148636 30148848 -159130706 - L1MC4a LINE L1 -1925 5883 5667 217 217 0 28 chr6 30148850 30148956 -159130598 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 1395 182 20 40 chr6 30149102 30149244 -159130310 + AluJb SINE Alu 1 144 -168 2276 77 0 3 chr6 30149244 30149543 -159130011 + AluSg SINE Alu 1 298 -12 1395 182 20 40 chr6 30149543 30149702 -159129852 + AluJb SINE Alu 144 296 -16 992 187 14 10 chr6 30149782 30149991 -159129563 + AluJo SINE Alu 85 294 -18 1581 114 0 0 chr6 30150585 30150805 -159128749 - AluSg/x SINE Alu -10 302 83 1257 166 58 75 chr6 30150888 30151196 -159128358 + AluJo SINE Alu 1 303 -9 3058 146 18 24 chr6 30151303 30151343 -159128211 - L1MB3 LINE L1 -7 6176 6137 186 71 0 0 chr6 30151343 30151371 -159128183 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1837 87 60 11 chr6 30151371 30151636 -159127918 - AluSc SINE Alu -31 278 1 3058 146 18 24 chr6 30151636 30152118 -159127436 - L1MB3 LINE L1 -45 6138 5660 2658 46 3 0 chr6 30152118 30152423 -159127131 - AluY SINE Alu -5 306 1 3058 146 18 24 chr6 30152423 30152807 -159126747 - L1MB3 LINE L1 -523 5660 5275 478 147 147 116 chr6 30153139 30153223 -159126331 + MER3 DNA MER1_type 1 92 -70 1992 139 3 10 chr6 30153223 30153524 -159126030 + AluJb SINE Alu 1 299 -13 478 147 147 116 chr6 30153524 30153568 -159125986 + MER3 DNA MER1_type 92 133 -76 258 380 62 8 chr6 30153610 30153739 -159125815 - L2 LINE L2 -573 2741 2606 374 223 172 87 chr6 30153801 30154133 -159125421 - MLT1J LTR MaLR -4 507 148 1867 157 143 51 chr6 30154315 30154743 -159124811 - MLT1C LTR MaLR 0 467 1 1961 139 0 37 chr6 30155258 30155581 -159123973 - AluJb SINE Alu -1 311 1 1673 181 0 0 chr6 30156217 30156493 -159123061 + AluJo SINE Alu 37 312 0 2570 47 0 0 chr6 30156540 30156839 -159122715 + AluY SINE Alu 1 299 -12 400 259 136 32 chr6 30157427 30157678 -159121876 + MLT1J LTR MaLR 232 508 -3 560 220 63 73 chr6 30157679 30157783 -159121771 - MIR SINE MIR -1 261 158 1168 169 16 6 chr6 30157783 30157966 -159121588 + MER5A DNA MER1_type 5 189 0 560 220 63 73 chr6 30157966 30158052 -159121502 - MIR SINE MIR -104 158 73 1304 160 82 25 chr6 30158095 30158367 -159121187 - Charlie2 DNA MER1_type 0 2862 2568 2242 136 0 0 chr6 30158367 30158676 -159120878 - AluSx SINE Alu -3 309 1 1304 160 82 25 chr6 30158676 30158721 -159120833 - Charlie2 DNA MER1_type -294 2568 2527 2212 89 7 10 chr6 30158740 30159031 -159120523 - AluSc SINE Alu -19 290 1 240 185 0 0 chr6 30159076 30159130 -159120424 + CT-rich Low_complexity Low_complexity 4 57 0 1788 166 7 23 chr6 30159143 30159451 -159120103 - AluSx SINE Alu -6 306 4 841 227 92 12 chr6 30159452 30159703 -159119851 - Charlie2 DNA MER1_type -628 2234 1964 241 328 49 0 chr6 30159763 30159885 -159119669 + MER112 DNA MER1_type 6 133 -127 3450 98 40 23 chr6 30159933 30160231 -159119323 - Tigger3(Golem) DNA MER2_type -1 3027 2715 2111 122 7 3 chr6 30160231 30160526 -159119028 + AluSq SINE Alu 1 296 -17 3450 98 40 23 chr6 30160526 30160745 -159118809 - Tigger3(Golem) DNA MER2_type -313 2715 2501 1076 117 0 0 chr6 30160745 30160926 -159118628 - AluSg/x SINE Alu 0 316 136 200 283 0 0 chr6 30161143 30161189 -159118365 + L2 LINE L2 3266 3311 -2 2660 52 0 0 chr6 30162369 30162677 -159116877 + AluY SINE Alu 1 308 -3 225 0 0 0 chr6 30162809 30162834 -159116720 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 1839 135 7 11 chr6 30162834 30163115 -159116439 - AluSx SINE Alu -32 280 1 1004 225 0 6 chr6 30163365 30163538 -159116016 - MER45A DNA AcHobo -3 175 4 1260 118 10 35 chr6 30164164 30164367 -159115187 + AluSg/x SINE Alu 115 312 0 1711 148 46 30 chr6 30164382 30164685 -159114869 + AluSx SINE Alu 1 308 -4 243 333 227 30 chr6 30164801 30164999 -159114555 - MIR SINE MIR -6 256 20 262 287 37 28 chr6 30165455 30165563 -159113991 + (TATATG)n Simple_repeat Simple_repeat 2 110 0 1947 128 3 49 chr6 30165584 30165890 -159113664 + AluSx SINE Alu 1 292 -20 1697 191 17 7 chr6 30166455 30166754 -159112800 + AluJb SINE Alu 11 312 0 492 176 19 19 chr6 30166990 30167098 -159112456 + MLT2D LTR ERVL 1 108 -306 1897 159 0 7 chr6 30167122 30167411 -159112143 - AluJb SINE Alu -25 287 1 21 0 0 0 chr6 30167420 30167441 -159112113 + AT_rich Low_complexity Low_complexity 1 21 0 2316 103 3 0 chr6 30167441 30167742 -159111812 - AluSq SINE Alu -11 302 1 1724 171 20 3 chr6 30167747 30168040 -159111514 - AluJb SINE Alu -14 298 1 807 179 0 41 chr6 30168068 30168213 -159111341 + FLAM_C SINE Alu 2 140 -3 825 223 113 42 chr6 30168213 30168496 -159111058 + MLT2B1 LTR ERVL 126 428 -92 2274 85 3 10 chr6 30168556 30168849 -159110705 + AluSp SINE Alu 1 291 -22 706 93 0 0 chr6 30169155 30169241 -159110313 - AluSp/q SINE Alu -14 299 214 542 98 120 0 chr6 30169238 30169359 -159110195 + AluSg/x SINE Alu 182 313 0 * 282 242 16 0 chr6 30169548 30169610 -159109944 - tRNA-Ile-ATT tRNA tRNA -14 63 1 2201 124 75 29 chr6 30169674 30170022 -159109532 - THE1B LTR MaLR 0 364 1 207 0 0 0 chr6 30170551 30170574 -159108980 + (TA)n Simple_repeat Simple_repeat 1 23 0 325 222 37 25 chr6 30170575 30170656 -159108898 - MIR SINE MIR -71 191 110 457 271 71 9 chr6 30171128 30171353 -159108201 + L1MC/D LINE L1 5266 5504 -2304 356 128 26 39 chr6 30171782 30171860 -159107694 - tRNA-Ser-AGC tRNA tRNA -6 79 3 273 262 40 56 chr6 30172538 30172664 -159106890 + MER5A DNA MER1_type 40 163 -26 2161 113 7 0 chr6 30173450 30173752 -159105802 + AluSx SINE Alu 1 304 -8 644 159 9 35 chr6 30173878 30173982 -159105572 + FLAM_A SINE Alu 22 124 -187 2429 62 3 3 chr6 30173982 30174286 -159105268 - AluSp SINE Alu -9 304 1 340 327 67 53 chr6 30174523 30175030 -159104524 + L1ME2 LINE L1 5387 5900 -264 445 244 24 16 chr6 30175101 30175224 -159104330 + L1MEc LINE L1 107 230 -6166 1719 138 34 28 chr6 30175492 30175783 -159103771 - AluSx SINE Alu -19 293 1 1096 202 39 0 chr6 30175784 30175992 -159103562 - MER58A DNA MER1_type -8 216 1 200 119 0 24 chr6 30176360 30176402 -159103152 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2487 54 0 3 chr6 30176522 30176818 -159102736 - AluY SINE Alu -16 295 1 25 0 0 0 chr6 30177309 30177334 -159102220 + AT_rich Low_complexity Low_complexity 1 25 0 700 27 0 0 chr6 30177354 30177429 -159102125 + tRNA-Thr-ACT tRNA tRNA 1 75 -2 636 207 167 7 chr6 30178202 30178352 -159101202 - MER45A DNA AcHobo -4 174 1 2114 83 54 0 chr6 30178504 30178780 -159100774 + AluSg SINE Alu 6 296 -14 628 82 0 0 chr6 30179208 30179281 -159100273 - tRNA-Val-GTG tRNA tRNA -3 73 1 6032 155 31 9 chr6 30179876 30181013 -159098541 - L1MC1 LINE L1 -1 6612 5453 5586 156 34 22 chr6 30180981 30181120 -159098434 - L1MC1 LINE L1 -5349 1077 941 * 1888 139 37 10 chr6 30181120 30181414 -159098140 - AluSx SINE Alu -10 302 1 5586 156 34 22 chr6 30181414 30182309 -159097245 - L1MC1 LINE L1 -5485 941 31 794 221 33 16 chr6 30182309 30182553 -159097001 - L1M4 LINE L1 -3118 3028 2781 1108 149 0 0 chr6 30182558 30182719 -159096835 - AluSg/x SINE Alu -17 295 135 1383 225 97 47 chr6 30182730 30183051 -159096503 - L1MD2 LINE L1 -8 6234 5931 2158 112 7 0 chr6 30183051 30183345 -159096209 - AluSx SINE Alu -16 296 1 1383 225 97 47 chr6 30183345 30183399 -159096155 - L1MD2 LINE L1 -311 5931 5881 2006 145 0 0 chr6 30183399 30183696 -159095858 + AluSx SINE Alu 1 297 -15 1383 225 97 47 chr6 30183696 30183924 -159095630 - L1MD2 LINE L1 -361 5881 5656 1856 179 0 3 chr6 30184154 30184187 -159095367 - AluSx SINE Alu 0 312 280 199 0 65 0 chr6 30184187 30184218 -159095336 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1856 179 0 3 chr6 30184218 30184497 -159095057 - AluSx SINE Alu -32 280 1 2297 105 0 0 chr6 30184530 30184825 -159094729 - AluSg SINE Alu -15 295 1 2618 49 0 0 chr6 30184899 30185204 -159094350 + AluY SINE Alu 1 305 -6 1588 165 91 15 chr6 30185205 30185545 -159094009 - L1MB4 LINE L1 -8 6172 5807 616 157 74 0 chr6 30185639 30185747 -159093807 - AluJ SINE Alu -7 305 190 907 162 0 0 chr6 30185750 30185892 -159093662 - AluJ SINE Alu -165 147 6 1630 199 10 103 chr6 30185897 30186029 -159093525 - L1 LINE L1 -1972 4174 4031 2128 91 14 14 chr6 30186029 30186325 -159093229 - AluSx SINE Alu -16 296 1 1630 199 10 103 chr6 30186325 30186631 -159092923 - L1 LINE L1 -2115 4031 3785 1990 143 7 3 chr6 30186631 30186932 -159092622 + AluSx SINE Alu 3 304 -8 1630 199 10 103 chr6 30186932 30186989 -159092565 - L1 LINE L1 -2361 3785 3724 601 241 44 16 chr6 30186981 30187230 -159092324 - L1 LINE L1 -2647 3499 3244 * 468 205 0 73 chr6 30189223 30189273 -159090281 - L1 LINE L1 -2837 3309 3257 2054 114 20 3 chr6 30189273 30189572 -159089982 - AluSx SINE Alu -8 304 1 468 205 0 73 chr6 30189572 30189672 -159089882 - L1 LINE L1 -2889 3257 3170 325 206 11 65 chr6 30189703 30189795 -159089759 + MLT2D LTR ERVL 287 373 -41 1033 165 141 20 chr6 30189933 30190182 -159089372 - AluJo SINE Alu -31 281 3 2397 71 7 3 chr6 30190215 30190525 -159089029 - AluSq SINE Alu -2 311 1 1045 99 12 43 chr6 30190561 30190793 -159088761 + AluSp SINE Alu 127 353 0 24 0 0 0 chr6 30191125 30191149 -159088405 + AT_rich Low_complexity Low_complexity 1 24 0 760 207 0 0 chr6 30191157 30191278 -159088276 - FLAM_A SINE Alu -12 121 1 25 0 0 0 chr6 30191386 30191411 -159088143 + AT_rich Low_complexity Low_complexity 1 25 0 2570 46 0 3 chr6 30191581 30191885 -159087669 + AluY SINE Alu 1 303 -8 1719 113 25 0 chr6 30191896 30192135 -159087419 + AluSx SINE Alu 1 245 -67 251 329 105 9 chr6 30192161 30192380 -159087174 - L1MB4 LINE L1 -2009 5799 5560 2198 105 3 9 chr6 30192527 30192842 -159086712 + AluSq SINE Alu 1 313 0 193 336 86 16 chr6 30193303 30193431 -159086123 + L2 LINE L2 2948 3084 -188 356 253 0 0 chr6 30194416 30194491 -159085063 + tRNA-Val-GTG tRNA tRNA 1 75 -1 226 23 47 47 chr6 30194731 30194774 -159084780 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 1519 152 53 4 chr6 30194796 30195060 -159084494 - AluJb SINE Alu -35 277 1 311 220 127 17 chr6 30195216 30195334 -159084220 - L1MB4 LINE L1 -956 5190 5060 211 185 37 0 chr6 30195361 30195415 -159084139 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1718 105 4 0 chr6 30195417 30195655 -159083899 - AluSp SINE Alu -74 239 1 329 250 11 11 chr6 30195680 30195768 -159083786 + L1MB1 LINE L1 5319 5406 -758 340 194 0 0 chr6 30196571 30196638 -159082916 - L1MB1 LINE L1 -1 6167 6101 857 236 0 43 chr6 30196639 30196847 -159082707 + MER8 DNA MER2_type 4 202 -37 331 87 65 0 chr6 30196855 30196901 -159082653 + AluJo SINE Alu 87 135 -167 256 189 19 0 chr6 30196906 30196959 -159082595 + L1MB1 LINE L1 5725 5778 -390 2083 123 3 23 chr6 30196975 30197284 -159082270 + AluSq SINE Alu 11 313 0 288 145 145 0 chr6 30197284 30197346 -159082208 + L1MB1 LINE L1 5852 5922 -261 1346 134 71 36 chr6 30197399 30197524 -159082030 + L1MB1 LINE L1 5906 6025 -143 2446 132 28 3 chr6 30197524 30197879 -159081675 - THE1B LTR MaLR 0 364 1 1346 134 71 36 chr6 30197879 30197940 -159081614 + L1MB1 LINE L1 6025 6082 -86 1224 214 0 36 chr6 30197940 30198188 -159081366 - MER8 DNA MER2_type 0 239 1 1346 134 71 36 chr6 30198188 30198253 -159081301 + L1MB1 LINE L1 6082 6167 -1 422 183 127 0 chr6 30198361 30198432 -159081122 - AluSg SINE Alu -229 81 2 1971 135 14 7 chr6 30198444 30198818 -159080736 - AluSx SINE Alu 0 376 1 1662 170 129 34 chr6 30198818 30199047 -159080507 - L1M3 LINE L1 -434 5734 5528 185 62 0 31 chr6 30199047 30199079 -159080475 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1662 170 129 34 chr6 30199079 30199475 -159080079 - L1M3 LINE L1 -640 5528 5048 1761 143 0 4 chr6 30199475 30199747 -159079807 - AluJb SINE Alu -41 271 1 216 182 0 0 chr6 30199762 30199806 -159079748 + (CAA)n Simple_repeat Simple_repeat 2 45 0 274 202 29 48 chr6 30199806 30199910 -159079644 + L1 LINE L1 4734 4835 -1311 * 1950 201 93 8 chr6 30199899 30200371 -159079183 - L1M3 LINE L1 -1422 4724 4213 1081 158 44 35 chr6 30200368 30200596 -159078958 - L1M3 LINE L1 -2289 3857 3628 * 2310 96 3 0 chr6 30200599 30200901 -159078653 + AluSx SINE Alu 1 303 -9 290 198 70 23 chr6 30200901 30200981 -159078573 - L1M3 LINE L1 -3011 3135 3052 2216 86 4 0 chr6 30200984 30201299 -159078255 + AluSp SINE Alu 3 318 0 1085 154 35 0 chr6 30201299 30201468 -159078086 + AluSg/x SINE Alu 134 308 -4 707 217 31 6 chr6 30201471 30201632 -159077922 - L1M3 LINE L1 -3353 2793 2629 585 357 61 50 chr6 30202168 30202647 -159076907 + L2 LINE L2 2785 3269 -3 686 106 0 0 chr6 30202657 30202751 -159076803 + AluS SINE Alu 7 100 -213 313 106 47 129 chr6 30202751 30202836 -159076718 - LTR41 LTR ERVL -140 633 556 657 187 32 39 chr6 30203066 30203221 -159076333 - LTR41 LTR ERVL -615 158 5 2324 58 38 0 chr6 30203338 30203630 -159075924 + AluSq SINE Alu 1 303 -10 667 14 0 0 chr6 30204060 30204133 -159075421 - tRNA-Val-GTT tRNA tRNA -3 73 1 31 96 0 0 chr6 30204508 30204602 -159074952 + AT_rich Low_complexity Low_complexity 1 94 0 234 311 0 0 chr6 30205075 30205136 -159074418 - tRNA-Val-GTG tRNA tRNA -15 61 1 825 181 23 53 chr6 30206156 30206327 -159073227 + FAM SINE Alu 2 167 -8 24 32 0 0 chr6 30206340 30206371 -159073183 + AT_rich Low_complexity Low_complexity 1 31 0 763 114 14 71 chr6 30206371 30206511 -159073043 + FLAM_C SINE Alu 1 132 -1 363 328 30 40 chr6 30206751 30206952 -159072602 + MIR SINE MIR 24 222 -40 244 276 198 17 chr6 30207045 30207161 -159072393 - MIR SINE MIR -123 139 3 232 280 75 0 chr6 30207562 30207655 -159071899 - MER5A DNA MER1_type -57 132 33 1564 168 154 9 chr6 30207961 30208396 -159071158 + MER109 Unknown Unknown 1933 2430 -2 664 217 249 43 chr6 30208408 30208449 -159071105 - L1M4 LINE L1 -1845 4301 4270 213 65 0 0 chr6 30208449 30208480 -159071074 + (TG)n Simple_repeat Simple_repeat 2 32 0 664 217 249 43 chr6 30208480 30208517 -159071037 - L1M4 LINE L1 -1876 4270 4242 1582 129 36 79 chr6 30208517 30208820 -159070734 + AluJo SINE Alu 1 290 -22 664 217 249 43 chr6 30208820 30209021 -159070533 - L1M4 LINE L1 -1904 4242 3963 908 168 13 7 chr6 30209040 30209195 -159070359 - AluJb SINE Alu -13 299 144 506 163 0 0 chr6 30209374 30209454 -159070100 - AluJ/FLAM SINE Alu -231 81 2 486 210 0 50 chr6 30209510 30209629 -159069925 + LTR38B LTR ERV1 2 114 -496 264 259 78 128 chr6 30209740 30210137 -159069417 + LTR38B LTR ERV1 183 559 -51 2487 81 3 0 chr6 30210138 30210447 -159069107 - AluSg SINE Alu 0 310 1 296 215 154 0 chr6 30212188 30212253 -159067301 + tRNA-Val-GTG tRNA tRNA 1 75 -1 189 74 0 0 chr6 30212263 30212290 -159067264 + (TC)n Simple_repeat Simple_repeat 2 28 0 664 256 36 31 chr6 30212353 30212548 -159067006 - MLT1D LTR MaLR -48 457 262 2634 46 7 0 chr6 30212552 30212888 -159066666 - AluY SINE Alu 0 338 1 955 142 119 28 chr6 30214058 30214276 -159065278 - MER31B LTR ERV1 -1 465 228 423 0 0 0 chr6 30214284 30214331 -159065223 + (T)n Simple_repeat Simple_repeat 1 47 0 2366 70 3 0 chr6 30214350 30214636 -159064918 + AluSp SINE Alu 1 287 -26 363 136 0 0 chr6 30214654 30214713 -159064841 + (CA)n Simple_repeat Simple_repeat 2 60 0 632 213 97 63 chr6 30214727 30214934 -159064620 - MER31B LTR ERV1 -252 214 1 2479 169 31 5 chr6 30215587 30216000 -159063554 + MER70B LTR ERVL 155 578 0 1943 188 30 3 chr6 30216002 30216363 -159063191 + MER70B-int LTR ERVL 1 371 -4652 5268 230 57 35 chr6 30217630 30219253 -159060301 + MER70B-int LTR ERVL 787 3092 -2438 2402 187 10 5 chr6 30219346 30219764 -159059790 + MER70B-int LTR ERVL 3580 3999 -1024 2288 229 27 4 chr6 30219771 30220252 -159059302 + MER70B LTR ERVL 32 523 -55 2198 66 7 31 chr6 30220422 30220755 -159058799 + AluY SINE Alu 1 326 0 1032 104 15 0 chr6 30220771 30220906 -159058648 + AluSg SINE Alu 1 137 -173 484 35 0 0 chr6 30220906 30220964 -159058590 + AluY SINE Alu 238 295 -14 2398 172 37 80 chr6 30221106 30221750 -159057804 - LTR6A LTR ERV1 0 564 1 633 174 106 8 chr6 30221869 30222001 -159057553 - MLT1G1 LTR MaLR -3 592 448 266 293 13 0 chr6 30221995 30222070 -159057484 - MLT1B LTR MaLR -197 345 270 * 719 214 17 17 chr6 30222297 30222470 -159057084 + L1M4 LINE L1 2283 2455 -3691 758 145 0 99 chr6 30222472 30222624 -159056930 + MLT1B LTR MaLR 1 137 -253 626 164 90 8 chr6 30222652 30222786 -159056768 - MLT1B LTR MaLR -245 145 1 347 71 0 0 chr6 30222990 30223032 -159056522 - 5S rRNA rRNA -79 42 1 672 221 14 0 chr6 30223476 30223616 -159055938 - MER41E LTR ERV1 -355 157 16 1220 132 0 77 chr6 30224227 30224447 -159055107 + AluJo SINE Alu 100 302 -10 184 270 0 0 chr6 30224501 30224538 -159055016 + MIR SINE MIR 112 148 -114 2095 170 86 30 chr6 30224567 30225031 -159054523 + LTR2B LTR ERV1 1 490 0 8668 43 0 0 chr6 30225120 30226089 -159053465 - LTR5 LTR ERVK 0 969 1 1934 242 44 8 chr6 30226412 30226844 -159052710 + MER41E LTR ERV1 21 473 -39 180 0 0 0 chr6 30226844 30226864 -159052690 + (CTGGGG)n Simple_repeat Simple_repeat 1 20 0 1934 242 44 8 chr6 30226864 30226906 -159052648 + MER41E LTR ERV1 473 512 0 3443 114 15 34 chr6 30226944 30227477 -159052077 - MER1A DNA MER1_type -4 523 1 186 133 0 0 chr6 30227667 30227697 -159051857 + (A)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr6 30228466 30228492 -159051062 + (CAA)n Simple_repeat Simple_repeat 2 27 0 633 14 0 0 chr6 30228545 30228617 -159050937 + tRNA-Met-i tRNA tRNA 1 72 -3 24 0 0 0 chr6 30228699 30228723 -159050831 + AT_rich Low_complexity Low_complexity 1 24 0 228 35 0 0 chr6 30228723 30228752 -159050802 + (TC)n Simple_repeat Simple_repeat 2 30 0 459 310 180 8 chr6 30228865 30229120 -159050434 + Charlie2b DNA MER1_type 834 1132 -1650 236 222 25 37 chr6 30229426 30229507 -159050047 + L1MC4a LINE L1 5740 5819 -1989 817 250 93 7 chr6 30229509 30229789 -159049765 + L1MC4a LINE L1 5851 6154 -1654 312 143 0 0 chr6 30229808 30229864 -159049690 + MER51B-int LTR ERV1 2084 2139 -3078 * 1904 121 92 8 chr6 30229837 30230211 -159049343 + MER51B-int LTR ERV1 2340 5375 -2043 461 120 109 11 chr6 30230210 30230302 -159049252 + MER51B-int LTR ERV1 5249 5349 -2188 * 624 163 93 16 chr6 30230292 30230421 -159049133 + MER51B-int LTR ERV1 5620 5758 -1779 8177 125 33 1 chr6 30231819 30233134 -159046420 + MER51B-int LTR ERV1 5744 7147 -390 615 234 15 0 chr6 30233134 30233271 -159046283 + LTR54B LTR ERV1 3 141 -357 2478 127 3 0 chr6 30233271 30233617 -159045937 + MER51B-int LTR ERV1 7470 7816 0 2247 114 77 3 chr6 30233618 30233969 -159045585 + MER51B LTR ERV1 1 377 0 299 275 90 76 chr6 30234001 30234096 -159045458 + L1MC4a LINE L1 6055 6147 -1661 2176 133 0 0 chr6 30234096 30234398 -159045156 - AluSx SINE Alu -10 302 1 299 275 90 76 chr6 30234398 30234513 -159045041 + L1MC4a LINE L1 6147 6268 -1540 948 227 32 141 chr6 30234712 30234938 -159044616 + L1MC4 LINE L1 6418 6667 -1375 2015 123 17 3 chr6 30234938 30235231 -159044323 - AluSx SINE Alu -15 297 1 948 227 32 141 chr6 30235231 30235572 -159043982 + L1MC4 LINE L1 6667 6923 -1119 1928 97 0 19 chr6 30235576 30235845 -159043709 + AluSc SINE Alu 34 297 -12 860 171 80 0 chr6 30235889 30236065 -159043489 - LTR47A LTR ERVL -2 450 261 529 256 30 6 chr6 30236315 30236479 -159043075 + L1MC4 LINE L1 6958 7125 -917 188 292 21 52 chr6 30236857 30236953 -159042601 + L2 LINE L2 3210 3302 -11 216 0 0 0 chr6 30238068 30238092 -159041462 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2469 53 0 7 chr6 30238435 30238735 -159040819 - AluY SINE Alu -13 298 1 1923 138 34 0 chr6 30238846 30239144 -159040410 - AluSx SINE Alu -4 308 1 2380 72 0 0 chr6 30239191 30239481 -159040073 + AluSc SINE Alu 1 290 -19 206 318 24 0 chr6 30239866 30239951 -159039603 + GA-rich Low_complexity Low_complexity 2 88 0 1879 104 0 8 chr6 30240555 30240814 -159038740 - AluSc SINE Alu -52 257 1 685 285 64 37 chr6 30241263 30241828 -159037726 - Charlie2 DNA MER1_type -38 2824 2245 605 42 0 0 chr6 30242017 30242088 -159037466 - tRNA-Gln-CAA tRNA tRNA -4 71 1 310 322 34 0 chr6 30242281 30242399 -159037155 - MIR SINE MIR -20 242 121 21 0 0 0 chr6 30244098 30244119 -159035435 + AT_rich Low_complexity Low_complexity 1 21 0 2121 100 31 17 chr6 30244252 30244543 -159035011 - AluSx SINE Alu -17 295 1 259 217 0 0 chr6 30246017 30246063 -159033491 + tRNA-Ser-AGC tRNA tRNA 33 78 -7 659 27 0 0 chr6 30246519 30246593 -159032961 - tRNA-Gln-CAA tRNA tRNA -1 74 1 512 272 70 6 chr6 30246679 30246837 -159032717 + MER20B DNA MER1_type 5 172 -611 215 211 77 0 chr6 30246979 30247031 -159032523 - L2 LINE L2 -511 2803 2748 1435 235 95 28 chr6 30247031 30247422 -159032132 + MLT1G LTR MaLR 172 588 -2 4272 71 15 121 chr6 30247455 30247573 -159031981 + MER4A LTR ERV1 2 131 -533 702 0 0 0 chr6 30247573 30247651 -159031903 + (TTTTA)n Simple_repeat Simple_repeat 3 80 0 4272 71 15 121 chr6 30247651 30247667 -159031887 + MER4A LTR ERV1 131 147 -517 835 97 8 15 chr6 30247667 30247801 -159031753 + FLAM_C SINE Alu 1 133 0 4272 71 15 121 chr6 30247801 30248407 -159031147 + MER4A LTR ERV1 147 664 0 556 304 157 15 chr6 30248956 30249358 -159030196 + L2 LINE L2 2843 3301 -12 2175 114 0 0 chr6 30249527 30249832 -159029722 - AluSx SINE Alu 0 305 1 227 367 23 8 chr6 30249848 30249976 -159029578 - MIR SINE MIR -65 197 68 205 51 51 0 chr6 30250035 30250074 -159029480 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2211 101 16 13 chr6 30250440 30250747 -159028807 + AluSx SINE Alu 1 308 -4 2385 85 0 13 chr6 30250841 30251146 -159028408 + AluSx SINE Alu 1 301 -11 5222 75 25 3 chr6 30251195 30251871 -159027683 + LTR8 LTR ERV1 1 691 0 2176 96 7 0 chr6 30252282 30252605 -159026949 + AluSx SINE Alu 1 325 0 874 225 86 94 chr6 30252718 30253113 -159026441 + MSTD LTR MaLR 1 392 -4 2186 101 0 26 chr6 30253552 30253858 -159025696 - AluSx SINE Alu -14 298 1 2334 85 3 0 chr6 30253863 30254158 -159025396 - AluSp SINE Alu -17 296 1 396 0 0 0 chr6 30254186 30254230 -159025324 + (CA)n Simple_repeat Simple_repeat 1 44 0 1641 231 25 0 chr6 30254354 30254679 -159024875 - MLT1A1 LTR MaLR -2 363 31 2324 89 13 0 chr6 30254940 30255243 -159024311 + AluSq SINE Alu 1 307 -6 258 280 0 40 chr6 30256061 30256136 -159023418 - L1MC/D LINE L1 -1907 5901 5830 695 264 11 77 chr6 30256140 30256224 -159023330 + MIR SINE MIR 4 92 -170 2083 157 117 15 chr6 30256224 30256625 -159022929 - MER65A LTR ERV1 -3 442 1 695 264 11 77 chr6 30256625 30256801 -159022753 + MIR SINE MIR 92 247 -15 627 250 159 17 chr6 30256840 30257072 -159022482 - L1MC/D LINE L1 -2023 5785 5521 1977 135 0 0 chr6 30257310 30257598 -159021956 - AluJb SINE Alu -20 292 5 513 207 165 0 chr6 30260232 30260508 -159019046 + MER33 DNA MER1_type 1 362 -1 242 304 216 6 chr6 30261954 30262125 -159017429 + L2 LINE L2 3107 3313 0 2400 88 3 0 chr6 30262955 30263263 -159016291 + AluSp SINE Alu 1 309 -4 652 27 0 0 chr6 30263624 30263698 -159015856 + tRNA-Arg-CGC tRNA tRNA 1 74 -2 273 57 0 0 chr6 30264280 30264315 -159015239 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1977 115 30 20 chr6 30265115 30265420 -159014134 - AluSp SINE Alu -5 308 1 633 27 0 0 chr6 30265604 30265679 -159013875 - tRNA-Ile-ATT tRNA tRNA -2 75 1 310 172 0 17 chr6 30265985 30266043 -159013511 - MER66A LTR ERV1 -138 340 284 2282 74 13 7 chr6 30267657 30267956 -159011598 - AluSx SINE Alu -2 310 10 436 226 7 95 chr6 30268063 30268200 -159011354 - FLAM_A SINE Alu -17 125 1 261 0 0 0 chr6 30268239 30268268 -159011286 + (TG)n Simple_repeat Simple_repeat 2 30 0 2126 95 0 26 chr6 30268520 30268824 -159010730 + AluSq SINE Alu 1 296 -17 1057 84 0 0 chr6 30268876 30269007 -159010547 + AluSc SINE Alu 1 131 -178 737 118 0 0 chr6 30269007 30269117 -159010437 + AluSg/x SINE Alu 191 300 -9 515 105 0 40 chr6 30269420 30269496 -159010058 - tRNA-Phe-TTC tRNA tRNA -3 73 1 360 43 0 0 chr6 30269517 30269563 -159009991 + (T)n Simple_repeat Simple_repeat 1 46 0 2294 74 9 49 chr6 30269778 30270104 -159009450 - AluSp SINE Alu 0 313 1 2432 45 3 32 chr6 30270463 30270774 -159008780 - AluY SINE Alu -7 304 3 494 161 34 85 chr6 30270774 30270892 -159008662 + MER92C LTR ERV1 200 311 -243 529 167 0 12 chr6 30270892 30270976 -159008578 - MER68 LTR ERV1 0 562 480 241 146 18 18 chr6 30271040 30271095 -159008459 - L1MC1 LINE L1 -318 6295 6241 474 213 52 29 chr6 30271097 30271233 -159008321 + MER92C LTR ERV1 414 552 -2 2196 114 3 0 chr6 30271783 30272082 -159007472 - AluSx SINE Alu -12 300 1 234 91 0 0 chr6 30272085 30272118 -159007436 + (T)n Simple_repeat Simple_repeat 1 33 0 1532 164 63 35 chr6 30272158 30272483 -159007071 - AluJo SINE Alu 0 333 1 631 186 22 82 chr6 30272498 30272681 -159006873 - L1MC2 LINE L1 -13 6331 6160 2036 113 51 0 chr6 30272682 30272974 -159006580 + AluSg SINE Alu 1 307 -3 2284 84 17 0 chr6 30272988 30273307 -159006247 + AluSq SINE Alu 1 313 0 3634 156 8 3 chr6 30273307 30274000 -159005554 - L1MC1 LINE L1 -467 6146 5453 * 4780 153 65 14 chr6 30273968 30274548 -159005006 - L1MC1 LINE L1 -5349 1077 435 2372 93 0 6 chr6 30274548 30274861 -159004693 + AluSx SINE Alu 1 311 -1 4780 153 65 14 chr6 30274861 30275175 -159004379 - L1MC1 LINE L1 -5991 435 138 2666 48 0 3 chr6 30275249 30275559 -159003995 - AluY SINE Alu -2 309 1 1838 203 155 58 chr6 30275606 30275702 -159003852 - L1MD2 LINE L1 -13 6346 6261 2186 111 3 0 chr6 30275702 30276000 -159003554 - AluSx SINE Alu -2 310 12 1838 203 155 58 chr6 30276000 30276229 -159003325 - L1MD2 LINE L1 -98 6261 6056 1983 120 27 20 chr6 30276229 30276530 -159003024 - AluSx SINE Alu -9 303 1 1838 203 155 58 chr6 30276530 30276571 -159002983 - L1MD2 LINE L1 -303 6056 5382 282 334 46 30 chr6 30276571 30276876 -159002678 - L1MA7 LINE L1 -365 5926 5617 1853 144 0 72 chr6 30277004 30277338 -159002216 + AluSx SINE Alu 1 310 -2 1873 186 77 12 chr6 30277470 30277901 -159001653 - L1MB3 LINE L1 0 6183 5725 228 139 14 0 chr6 30277917 30277956 -159001598 - AluJo SINE Alu -22 280 239 598 221 7 14 chr6 30277956 30278096 -159001458 - AluJo SINE Alu -172 140 2 2903 175 21 62 chr6 30278097 30278163 -159001391 - L1MB3 LINE L1 -447 5733 5666 2492 57 0 31 chr6 30278163 30278481 -159001073 - AluY SINE Alu -3 308 1 2903 175 21 62 chr6 30278481 30279040 -159000514 - L1MB3 LINE L1 -514 5666 5181 2190 109 0 3 chr6 30279040 30279365 -159000189 - AluSx SINE Alu 0 312 1 2903 175 21 62 chr6 30279365 30279836 -158999718 - L1MB3 LINE L1 -999 5181 4692 9975 53 7 106 chr6 30279853 30281386 -158998168 - SVA Other Other 0 1386 5 2745 209 33 18 chr6 30281666 30282388 -158997166 - L1MB3 LINE L1 -2194 3952 3220 252 222 0 63 chr6 30282486 30282549 -158997005 + MLT2D LTR ERVL 291 349 -65 354 173 0 0 chr6 30282578 30282653 -158996901 + CT-rich Low_complexity Low_complexity 1 75 0 243 0 0 0 chr6 30282676 30282703 -158996851 + (CA)n Simple_repeat Simple_repeat 1 27 0 693 279 112 18 chr6 30282753 30283093 -158996461 - L1ME3A LINE L1 -156 6014 5643 603 68 0 0 chr6 30283261 30283334 -158996220 + tRNA-Val-GTT tRNA tRNA 1 73 -3 28 29 0 0 chr6 30283901 30283936 -158995618 + AT_rich Low_complexity Low_complexity 1 35 0 2079 118 10 14 chr6 30284061 30284358 -158995196 + AluSx SINE Alu 1 296 -16 1149 159 52 30 chr6 30284563 30284686 -158994868 + Tigger7 DNA MER2_type 2255 2387 -104 4769 95 4 38 chr6 30284686 30285101 -158994453 - MER4A LTR ERV1 0 664 280 2426 97 0 10 chr6 30285101 30285411 -158994143 - AluSx SINE Alu -5 307 1 4769 95 4 38 chr6 30285411 30285682 -158993872 - MER4A LTR ERV1 -384 280 1 1149 159 52 30 chr6 30285682 30285790 -158993764 + Tigger7 DNA MER2_type 2387 2491 0 3102 138 53 96 chr6 30286043 30286234 -158993320 - LTR8 LTR ERV1 0 691 493 2151 114 0 16 chr6 30286234 30286542 -158993012 + AluSq SINE Alu 2 304 -9 3102 138 53 96 chr6 30286542 30287072 -158992482 - LTR8 LTR ERV1 -198 493 1 2220 92 0 72 chr6 30287145 30287480 -158992074 + AluSx SINE Alu 1 311 -1 345 208 28 14 chr6 30287743 30287815 -158991739 + tRNA-Val-GTG tRNA tRNA 1 73 -3 1862 151 0 31 chr6 30288133 30288452 -158991102 - AluJb SINE Alu -2 310 2 1009 147 0 0 chr6 30288623 30288766 -158990788 + AluSg/x SINE Alu 145 287 -25 270 253 90 18 chr6 30288772 30288938 -158990616 - L1ME3A LINE L1 -969 5177 5000 * 361 211 16 11 chr6 30288921 30289020 -158990534 + L1M LINE L1 5312 5407 -764 4388 200 75 48 chr6 30289829 30289882 -158989672 - L1MB1 LINE L1 -4 6164 6114 2324 78 3 7 chr6 30289882 30290177 -158989377 - AluSp SINE Alu -19 294 1 4388 200 75 48 chr6 30290177 30290447 -158989107 - L1MB1 LINE L1 -54 6114 5853 1336 178 159 0 chr6 30290447 30290705 -158988849 - AluJo SINE Alu -3 299 1 4388 200 75 48 chr6 30290705 30290933 -158988621 - L1MB1 LINE L1 -315 5853 5633 2143 136 3 0 chr6 30290933 30291242 -158988312 - AluSx SINE Alu -2 310 1 4388 200 75 48 chr6 30291242 30291550 -158988004 - L1MB1 LINE L1 -535 5633 5335 2277 94 3 0 chr6 30291550 30291838 -158987716 - AluSp SINE Alu -24 289 1 4388 200 75 48 chr6 30291838 30292002 -158987552 - L1MB1 LINE L1 -833 5335 5177 1755 119 93 0 chr6 30292002 30292270 -158987284 + AluSp SINE Alu 21 313 0 4388 200 75 48 chr6 30292270 30293189 -158986365 - L1MB1 LINE L1 -991 5177 4162 661 233 0 0 chr6 30293339 30293468 -158986086 + FLAM_A SINE Alu 2 130 -3 203 245 0 71 chr6 30293836 30293934 -158985620 + A-rich Low_complexity Low_complexity 5 95 0 2432 59 14 0 chr6 30293989 30294277 -158985277 + AluY SINE Alu 1 292 -19 2159 107 0 38 chr6 30294727 30295046 -158984508 - AluSc SINE Alu 0 309 3 1501 171 18 145 chr6 30295062 30295161 -158984393 + LTR26E LTR ERV1 280 390 -232 747 180 0 0 chr6 30295161 30295283 -158984271 + FLAM_C SINE Alu 1 122 -11 1501 171 18 145 chr6 30295283 30295316 -158984238 + LTR26E LTR ERV1 390 426 -196 2152 117 0 35 chr6 30295316 30295633 -158983921 + AluSx SINE Alu 1 306 -6 1501 171 18 145 chr6 30295633 30295676 -158983878 + LTR26E LTR ERV1 426 473 -149 2170 126 0 22 chr6 30295676 30295994 -158983560 - AluSx SINE Alu -1 311 1 1501 171 18 145 chr6 30295994 30296209 -158983345 + LTR26E LTR ERV1 473 622 0 1667 150 64 4 chr6 30296315 30296582 -158982972 - AluJo SINE Alu -19 293 11 21 0 0 31 chr6 30296855 30296872 -158982682 + AT_rich Low_complexity Low_complexity 1 18 -13 2505 84 0 3 chr6 30296872 30297183 -158982371 + AluY SINE Alu 1 310 -1 21 0 0 31 chr6 30297183 30297197 -158982357 + AT_rich Low_complexity Low_complexity 18 31 0 1990 116 55 27 chr6 30297241 30297569 -158981985 - MER1B DNA MER1_type 0 337 1 299 29 0 0 chr6 30297914 30297948 -158981606 + MLT2A1 LTR ERVL 411 444 0 17969 64 14 19 chr6 30297948 30300230 -158979324 + HERVL-A1 LTR ERVL 1 2272 -3382 916 201 1 0 chr6 30300228 30300404 -158979150 + ERVL LTR ERVL 1498 1693 -3979 * 612 96 85 0 chr6 30300566 30300660 -158978894 + ERVL LTR ERVL 1693 1794 -3970 3430 70 14 0 chr6 30300671 30301099 -158978455 - LTR3b LTR ERVK -3 434 1 3952 148 19 0 chr6 30301099 30301681 -158977873 + ERVL LTR ERVL 1788 2380 -3384 1194 164 36 84 chr6 30301683 30301957 -158977597 + MLT2B2 LTR ERVL 255 515 0 1685 210 25 27 chr6 30304113 30304479 -158975075 + MLT1A1 LTR MaLR 1 365 0 354 296 57 68 chr6 30304773 30304855 -158974699 + LTR33 LTR ERVL 47 128 -393 2208 112 10 0 chr6 30304855 30305151 -158974403 - AluSg SINE Alu -11 299 1 354 296 57 68 chr6 30305151 30305244 -158974310 + LTR33 LTR ERVL 128 220 -301 482 285 32 72 chr6 30305278 30305499 -158974055 + LTR33 LTR ERVL 308 519 -2 2368 76 3 0 chr6 30305566 30305855 -158973699 + AluSp SINE Alu 11 300 -13 1526 159 24 54 chr6 30305904 30306200 -158973354 + AluJb SINE Alu 2 288 -24 31 0 0 0 chr6 30306427 30306458 -158973096 + AT_rich Low_complexity Low_complexity 1 31 0 2109 124 30 0 chr6 30306679 30306978 -158972576 - AluSx SINE Alu -4 308 1 2477 74 0 0 chr6 30307098 30307396 -158972158 - AluSg SINE Alu -12 298 1 1418 158 87 34 chr6 30307473 30307771 -158971783 + LTR48 LTR ERV1 1 314 -473 2206 128 0 3 chr6 30307772 30308085 -158971469 + AluSq SINE Alu 1 312 -1 4926 79 4 69 chr6 30308102 30308810 -158970744 + MER4A LTR ERV1 3 664 0 2608 198 42 12 chr6 30309201 30309241 -158970313 - MLT2B2 LTR ERVL -1 514 477 237 65 0 0 chr6 30309241 30309272 -158970282 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 2608 198 42 12 chr6 30309272 30309730 -158969824 - MLT2B2 LTR ERVL -38 477 1 3184 144 89 76 chr6 30309854 30309992 -158969562 + MER50 LTR ERV1 1 136 -598 2320 60 0 14 chr6 30309992 30310311 -158969243 + AluY SINE Alu 1 315 0 3184 144 89 76 chr6 30310311 30310867 -158968687 + MER50 LTR ERV1 136 705 -29 489 284 93 6 chr6 30310964 30311126 -158968428 - LTR67 LTR ERVL -34 523 348 215 122 0 24 chr6 30311228 30311269 -158968285 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 1929 116 58 10 chr6 30311279 30311573 -158967981 - AluSx SINE Alu -4 308 1 244 369 87 0 chr6 30311573 30311670 -158967884 - LTR67 LTR ERVL -345 212 107 1845 159 7 3 chr6 30311693 30311988 -158967566 + AluJo SINE Alu 7 302 -10 995 246 57 93 chr6 30311994 30312552 -158967002 + MER34 LTR ERV1 1 538 -4 1722 174 3 0 chr6 30312929 30313240 -158966314 + AluSx SINE Alu 1 312 0 836 239 6 17 chr6 30313331 30313511 -158966043 - LTR8 LTR ERV1 0 691 514 794 189 40 0 chr6 30313513 30313661 -158965893 - LTR8A LTR ERV1 -573 154 1 2032 115 0 0 chr6 30313684 30313963 -158965591 + AluSq SINE Alu 23 301 -12 184 389 53 15 chr6 30314052 30314183 -158965371 - L2 LINE L2 -240 3032 2897 641 206 181 6 chr6 30314701 30314861 -158964693 - AluJo SINE Alu -5 307 120 304 309 64 0 chr6 30314870 30314980 -158964574 - L2 LINE L2 -5 3267 3151 257 308 13 0 chr6 30315041 30315119 -158964435 - MLT1K LTR MaLR -3 585 507 510 126 92 0 chr6 30315263 30315350 -158964204 - L1M3f LINE L1 -5227 101 7 1984 120 0 13 chr6 30315481 30315782 -158963772 + AluSx SINE Alu 1 297 -15 396 176 0 14 chr6 30315832 30315906 -158963648 - tRNA-Thr-ACA tRNA tRNA -3 73 1 25 31 0 0 chr6 30316615 30316647 -158962907 + AT_rich Low_complexity Low_complexity 1 32 0 201 181 14 28 chr6 30318140 30318212 -158961342 + (TA)n Simple_repeat Simple_repeat 1 71 0 385 234 95 36 chr6 30318351 30318488 -158961066 + L1ME4a LINE L1 5783 5927 -194 2093 112 11 11 chr6 30318790 30318917 -158960637 + AluSq SINE Alu 9 135 -178 2462 56 16 10 chr6 30318917 30319223 -158960331 + AluSc SINE Alu 1 308 -1 2093 112 11 11 chr6 30319223 30319382 -158960172 + AluSq SINE Alu 134 295 -18 2596 49 0 3 chr6 30319555 30319861 -158959693 - AluY SINE Alu -6 305 1 682 285 221 44 chr6 30319955 30320335 -158959219 - LTR33 LTR ERVL -51 470 6 2258 109 3 0 chr6 30320417 30320719 -158958835 - AluSx SINE Alu -9 303 1 24 53 0 0 chr6 30321098 30321136 -158958418 + AT_rich Low_complexity Low_complexity 1 38 0 2234 106 0 0 chr6 30321174 30321467 -158958087 + AluSc SINE Alu 1 293 -16 264 263 18 0 chr6 30321702 30321759 -158957795 - MER5C DNA MER1_type -262 62 5 1824 116 94 4 chr6 30322165 30322440 -158957114 + AluSq SINE Alu 6 305 -8 989 168 0 0 chr6 30322441 30322630 -158956924 + AluSg/x SINE Alu 132 320 0 610 257 0 0 chr6 30323419 30323559 -158955995 - MLT1-int LTR MaLR -835 536 397 1087 84 0 0 chr6 30323568 30323711 -158955843 - Alu SINE Alu -1 310 168 2023 157 0 0 chr6 30328546 30328846 -158950708 + AluJb SINE Alu 1 300 -12 466 326 7 0 chr6 30330097 30330235 -158949319 + MIR SINE MIR 124 262 0 180 111 0 0 chr6 30330437 30330464 -158949090 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 5788 144 69 33 chr6 30330581 30331955 -158947599 + L1MA5 LINE L1 4904 6299 -1 638 281 63 30 chr6 30332132 30332431 -158947123 + L1MC4a LINE L1 5536 5844 -1964 1469 182 0 16 chr6 30332451 30332709 -158946845 + AluJo SINE Alu 1 254 -58 784 308 71 0 chr6 30332929 30333254 -158946300 + L1MEc LINE L1 34 381 -6015 383 271 21 0 chr6 30333270 30333366 -158946188 + MER63A DNA MER1_type 84 181 -29 595 284 95 34 chr6 30333693 30334020 -158945534 + MER68 LTR ERV1 216 562 0 5898 222 94 54 chr6 30334101 30334774 -158944780 + L1MEc LINE L1 49 694 -5702 2264 88 0 3 chr6 30334774 30335068 -158944486 - AluY SINE Alu -18 293 1 5898 222 94 54 chr6 30335068 30335153 -158944401 + L1MEc LINE L1 694 774 -5622 2268 101 0 7 chr6 30335153 30335450 -158944104 + AluSg SINE Alu 1 295 -15 5898 222 94 54 chr6 30335450 30335646 -158943908 + L1MEc LINE L1 774 961 -5435 1865 38 0 0 chr6 30335646 30335859 -158943695 + L1PA4 LINE L1 5943 6155 0 5898 222 94 54 chr6 30335859 30336526 -158943028 + L1MEc LINE L1 961 1600 -4796 968 206 65 42 chr6 30336526 30336740 -158942814 - MER20 DNA MER1_type 0 219 1 5898 222 94 54 chr6 30336740 30337305 -158942249 + L1MEc LINE L1 1600 2325 -4071 2483 66 0 3 chr6 30337305 30337608 -158941946 + AluY SINE Alu 1 302 -9 632 197 148 0 chr6 30337613 30337735 -158941819 + MLT1A1 LTR MaLR 173 312 -53 285 29 0 0 chr6 30337735 30337769 -158941785 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 2449 72 0 3 chr6 30337773 30338080 -158941474 + AluY SINE Alu 1 306 -5 1911 249 92 6 chr6 30338081 30338472 -158941082 + L1MEc LINE L1 2278 2730 -3485 2153 180 102 34 chr6 30338472 30338707 -158940847 + MLT1D LTR MaLR 1 219 -286 294 29 0 0 chr6 30338707 30338742 -158940812 + (GA)n Simple_repeat Simple_repeat 2 36 0 2153 180 102 34 chr6 30338742 30338979 -158940575 + MLT1D LTR MaLR 219 505 0 1911 249 92 6 chr6 30338979 30339130 -158940424 + L1MEc LINE L1 2730 2867 -3348 451 205 24 13 chr6 30339129 30339255 -158940299 + L1MA10 LINE L1 6039 6298 0 * 2071 113 0 7 chr6 30339884 30340175 -158939379 + AluSg SINE Alu 1 289 -21 2421 230 60 21 chr6 30340868 30341585 -158937969 + L1ME3 LINE L1 5418 6162 0 276 374 35 0 chr6 30341620 30341735 -158937819 + MIR SINE MIR 23 141 -67 2332 97 0 0 chr6 30341931 30342229 -158937325 + AluSg SINE Alu 1 298 -12 201 143 0 0 chr6 30343303 30343331 -158936223 + MIR SINE MIR 219 246 -16 1602 329 145 21 chr6 30343578 30344578 -158934976 + L3 LINE CR1 452 1575 -2 24 32 0 0 chr6 30345714 30345745 -158933809 + GC_rich Low_complexity Low_complexity 1 31 0 2367 69 20 3 chr6 30345940 30346245 -158933309 + AluSg SINE Alu 1 310 0 401 228 73 16 chr6 30346299 30346422 -158933132 + MER112 DNA MER1_type 106 235 -25 2576 55 0 3 chr6 30346425 30346732 -158932822 - AluSx SINE Alu -6 306 1 393 195 0 0 chr6 30347069 30347146 -158932408 + MLT1A1-int LTR MaLR 206 282 -1089 * 5489 148 24 68 chr6 30347127 30348326 -158931228 + L1MC1 LINE L1 5172 6315 -18 1653 196 13 9 chr6 30348342 30348701 -158930853 + MLT1A1-int LTR MaLR 245 586 -785 575 224 24 8 chr6 30348716 30348841 -158930713 - FLAM_C SINE Alu -15 128 2 955 191 12 0 chr6 30349186 30349359 -158930195 + AluJo SINE Alu 113 287 -25 1505 215 90 60 chr6 30349643 30350316 -158929238 - LTR48 LTR ERV1 0 644 1 214 265 0 15 chr6 30350366 30350495 -158929059 + CT-rich Low_complexity Low_complexity 1 127 0 774 12 0 0 chr6 30351382 30351464 -158928090 + tRNA-Ser-TCC tRNA tRNA 1 82 -3 676 0 0 0 chr6 30352244 30352316 -158927238 + tRNA-Asp-GAC tRNA tRNA 1 72 -3 1918 198 82 108 chr6 30352512 30352727 -158926827 + L1MC4 LINE L1 7328 7547 -495 242 65 0 0 chr6 30352727 30352758 -158926796 - MADE1 DNA Mariner -48 32 2 1918 198 82 108 chr6 30352758 30352780 -158926774 + L1MC4 LINE L1 7547 7568 -474 366 23 0 0 chr6 30352780 30352823 -158926731 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1918 198 82 108 chr6 30352823 30353288 -158926266 + L1MC4 LINE L1 7568 8042 0 2337 89 3 0 chr6 30353811 30354113 -158925441 + AluSx SINE Alu 1 303 -9 1877 112 93 0 chr6 30354387 30354656 -158924898 - AluSg SINE Alu -16 294 1 305 335 43 34 chr6 30354657 30354982 -158924572 + L1ME LINE L1 90 417 -5653 3073 256 63 92 chr6 30355294 30355768 -158923786 + L1M4 LINE L1 2839 3326 -2820 225 122 0 0 chr6 30355768 30355809 -158923745 - LTR66 LTR ERVL -172 438 398 3073 256 63 92 chr6 30355809 30355923 -158923631 + L1M4 LINE L1 3326 3442 -2704 2494 84 0 0 chr6 30355923 30356233 -158923321 + AluSx SINE Alu 1 310 -2 3073 256 63 92 chr6 30356233 30356664 -158922890 + L1M4 LINE L1 3442 3884 -2262 6482 76 8 67 chr6 30356664 30358107 -158921447 - SVA Other Other -551 1386 433 3073 256 63 92 chr6 30358107 30358174 -158921380 + L1M4 LINE L1 3884 3951 -2195 5424 67 36 55 chr6 30358174 30358999 -158920555 - SVA Other Other -520 866 57 264 30 0 0 chr6 30358999 30359032 -158920522 + (GGGAGA)n Simple_repeat Simple_repeat 1 33 0 3073 256 63 92 chr6 30359032 30359531 -158920023 + L1M4 LINE L1 3950 4404 -1742 1658 185 17 20 chr6 30359531 30359828 -158919726 + AluJb SINE Alu 5 300 -12 3073 256 63 92 chr6 30359828 30360154 -158919400 + L1M4 LINE L1 4404 4738 -1408 700 283 48 10 chr6 30360205 30360495 -158919059 + L1M4 LINE L1 4944 5244 -902 623 178 0 0 chr6 30360548 30360649 -158918905 - AluJ/FLAM SINE Alu -210 102 2 2154 118 0 7 chr6 30360657 30360953 -158918601 - AluSg SINE Alu -16 294 1 1052 163 0 11 chr6 30361257 30361441 -158918113 - AluJb SINE Alu -1 311 130 2382 112 0 0 chr6 30361453 30361765 -158917789 - AluSx SINE Alu 0 312 1 2200 88 27 3 chr6 30361803 30362100 -158917454 - AluSx SINE Alu -8 304 1 2297 110 0 0 chr6 30362258 30362567 -158916987 + AluSx SINE Alu 1 309 -3 1093 141 0 0 chr6 30362652 30362808 -158916746 - MLT1B LTR MaLR -234 156 1 2892 258 96 36 chr6 30362809 30364473 -158915081 + L1M4 LINE L1 3502 5264 -882 1831 87 38 8 chr6 30364473 30364737 -158914817 + MLT2A1 LTR ERVL 1 272 -172 392 145 43 14 chr6 30365170 30365239 -158914315 + MER5A DNA MER1_type 3 73 -116 252 136 0 0 chr6 30365256 30365300 -158914254 + MER74B LTR ERVL 1 44 -578 1462 236 38 28 chr6 30365360 30365758 -158913796 + MER74B LTR ERVL 211 612 -10 1977 130 56 0 chr6 30366034 30366318 -158913236 + AluSx SINE Alu 1 300 -12 695 159 0 90 chr6 30366339 30366484 -158913070 - FLAM_C SINE Alu -1 132 1 1263 243 68 19 chr6 30366491 30366915 -158912639 - L1ME3A LINE L1 -6 6164 5720 224 309 7 33 chr6 30367542 30367694 -158911860 + CT-rich Low_complexity Low_complexity 3 150 0 774 12 0 0 chr6 30368384 30368466 -158911088 + tRNA-Ser-TCC tRNA tRNA 1 82 -3 2472 71 13 0 chr6 30368856 30369164 -158910390 + AluSx SINE Alu 1 312 0 814 238 50 0 chr6 30369191 30369393 -158910161 - L1MC4 LINE L1 -514 7528 7317 25 0 0 0 chr6 30369598 30369623 -158909931 + AT_rich Low_complexity Low_complexity 1 25 0 448 260 46 46 chr6 30369834 30369902 -158909652 + L1M4 LINE L1 4363 4430 -1716 2223 112 3 13 chr6 30369902 30370215 -158909339 + AluSg SINE Alu 1 310 0 448 260 46 46 chr6 30370215 30370450 -158909104 + L1M4 LINE L1 4429 4666 -1480 252 197 0 45 chr6 30370527 30370593 -158908961 + L1M4 LINE L1 4695 4757 -1389 31 68 0 0 chr6 30370599 30370658 -158908896 + AT_rich Low_complexity Low_complexity 1 59 0 1564 250 149 9 chr6 30370686 30371122 -158908432 + MLT2F LTR ERVL 18 514 -149 267 143 0 0 chr6 30371144 30371186 -158908368 + MLT2F LTR ERVL 622 663 0 449 246 82 27 chr6 30371452 30371635 -158907919 + L1MEc LINE L1 34 226 -6170 1700 221 97 45 chr6 30371641 30371809 -158907745 + L1MEc LINE L1 2451 2609 -3606 2198 86 10 7 chr6 30371809 30372124 -158907430 - AluSx SINE Alu 0 312 1 1700 221 97 45 chr6 30372124 30372553 -158907001 + L1MEc LINE L1 2609 3079 -3136 828 180 0 0 chr6 30372586 30372714 -158906840 + AluJ SINE Alu 2 129 -183 630 184 9 28 chr6 30372723 30373048 -158906506 + GA-rich Low_complexity Low_complexity 1 318 0 765 165 24 82 chr6 30373050 30373220 -158906334 + AluJ SINE Alu 136 295 -17 1187 255 61 53 chr6 30373225 30373811 -158905743 + L1MEc LINE L1 3117 3677 -2538 403 167 33 0 chr6 30373811 30373901 -158905653 + L1MB3 LINE L1 6087 6179 -4 1187 255 61 53 chr6 30373901 30374116 -158905438 + L1MEc LINE L1 3677 3889 -2326 186 256 128 13 chr6 30374251 30374329 -158905225 + MIR SINE MIR 121 207 -55 261 257 200 7 chr6 30374963 30375103 -158904451 - L1MC/D LINE L1 -1984 5824 5658 774 12 0 0 chr6 30375609 30375691 -158903863 + tRNA-Ser-TCC tRNA tRNA 1 82 -3 676 0 0 0 chr6 30376314 30376386 -158903168 + tRNA-Asp-GAC tRNA tRNA 1 72 -3 891 249 26 25 chr6 30377030 30377293 -158902261 + L1P2 LINE L1 5514 5774 -380 201 284 20 29 chr6 30377452 30377554 -158902000 + CT-rich Low_complexity Low_complexity 1 101 0 748 24 0 0 chr6 30378398 30378480 -158901074 - tRNA-Ser-TCA tRNA tRNA -3 82 1 1481 223 100 33 chr6 30379566 30379996 -158899558 + MLT1C LTR MaLR 6 464 -3 1889 113 44 20 chr6 30380092 30380385 -158899169 - AluSg SINE Alu -10 300 1 327 330 21 31 chr6 30380402 30380593 -158898961 + L1ME4a LINE L1 5640 5828 -293 297 265 132 32 chr6 30380628 30380847 -158898707 + L1ME4a LINE L1 5814 6054 -67 364 266 63 21 chr6 30381003 30381146 -158898408 + HAL1 LINE L1 1 149 -2358 376 274 6 91 chr6 30381160 30381191 -158898363 - MLT1J2 LTR MaLR -41 409 377 2111 50 0 8 chr6 30381191 30381450 -158898104 - AluSp SINE Alu -13 300 44 376 274 6 91 chr6 30381450 30381593 -158897961 - MLT1J2 LTR MaLR -73 377 250 256 341 73 8 chr6 30381582 30381705 -158897849 - MLT1I LTR MaLR -211 198 68 * 530 286 207 57 chr6 30381773 30381939 -158897615 + HAL1 LINE L1 131 271 -2236 2181 95 0 3 chr6 30381939 30382249 -158897305 + AluSg SINE Alu 1 309 0 530 286 207 57 chr6 30382249 30382865 -158896689 + HAL1 LINE L1 271 1031 -1476 456 127 0 0 chr6 30382884 30382947 -158896607 - AluJ/FRAM SINE Alu -26 286 224 215 311 184 0 chr6 30383324 30383427 -158896127 + L2 LINE L2 2215 2336 -978 23 0 0 0 chr6 30383532 30383555 -158895999 + AT_rich Low_complexity Low_complexity 1 23 0 1173 171 47 9 chr6 30383563 30383774 -158895780 + AluJb SINE Alu 87 305 -7 507 249 76 10 chr6 30383774 30383971 -158895583 + HAL1 LINE L1 1079 1288 -1219 2270 93 3 28 chr6 30384008 30384329 -158895225 - AluSp SINE Alu 0 313 1 357 45 15 30 chr6 30384391 30384457 -158895097 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 541 245 31 6 chr6 30384484 30384643 -158894911 + HAL1 LINE L1 1488 1650 -857 278 250 22 0 chr6 30384661 30384753 -158894801 - LTR33A LTR ERVL -17 506 413 588 258 60 56 chr6 30384813 30385065 -158894489 - LTR33A LTR ERVL -269 254 2 670 268 115 14 chr6 30385078 30385287 -158894267 + HAL1 LINE L1 1646 1875 -632 484 251 68 21 chr6 30385432 30385623 -158893931 + HAL1 LINE L1 2078 2277 -230 263 329 82 18 chr6 30385633 30385803 -158893751 - LTR33 LTR ERVL 0 521 341 450 307 68 5 chr6 30385892 30386084 -158893470 - LTR33 LTR ERVL -291 230 27 2013 110 37 17 chr6 30386133 30386433 -158893121 + AluSx SINE Alu 1 306 -6 625 215 157 0 chr6 30386457 30386629 -158892925 - MIR SINE MIR 0 262 64 1289 171 0 13 chr6 30386712 30386946 -158892608 + L1MB5 LINE L1 5910 6140 -34 1209 218 5 9 chr6 30387047 30387267 -158892287 + MER20 DNA MER1_type 1 219 0 261 0 0 0 chr6 30387984 30388013 -158891541 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 199 307 61 83 chr6 30389287 30389515 -158890039 + L2 LINE L2 3012 3234 -38 2895 170 70 29 chr6 30389731 30390146 -158889408 - L1MC3 LINE L1 -49 7736 7288 2074 120 0 0 chr6 30390146 30390452 -158889102 - AluSx SINE Alu 0 306 1 2895 170 70 29 chr6 30390452 30390623 -158888931 - L1MC3 LINE L1 -497 7288 7125 229 79 53 0 chr6 30390706 30390744 -158888810 - L1MD3 LINE L1 -1018 6977 6938 22 0 0 0 chr6 30390750 30390772 -158888782 + AT_rich Low_complexity Low_complexity 1 22 0 708 0 0 0 chr6 30392099 30392171 -158887383 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 304 257 71 86 chr6 30393070 30393210 -158886344 - L1ME3A LINE L1 -285 5885 5748 241 281 16 16 chr6 30393748 30393810 -158885744 - LTR67 LTR ERVL -383 174 113 787 261 25 10 chr6 30393810 30394009 -158885545 - MLT1A2 LTR MaLR 0 374 173 696 205 0 0 chr6 30394270 30394392 -158885162 + AluJb SINE Alu 2 123 -189 38 75 0 0 chr6 30394688 30394768 -158884786 + AT_rich Low_complexity Low_complexity 1 80 0 31 82 0 0 chr6 30395312 30395385 -158884169 + AT_rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr6 30395520 30395543 -158884011 + AT_rich Low_complexity Low_complexity 1 23 0 1327 113 49 24 chr6 30395715 30395898 -158883656 - AluSc SINE Alu 0 309 79 291 28 0 0 chr6 30395898 30395934 -158883620 + (TG)n Simple_repeat Simple_repeat 2 37 0 1327 113 49 24 chr6 30395934 30396016 -158883538 - AluSc SINE Alu -230 79 1 217 405 0 0 chr6 30396553 30396721 -158882833 + (TGG)n Simple_repeat Simple_repeat 1 168 0 983 185 0 0 chr6 30397470 30397632 -158881922 + AluSg/x SINE Alu 137 298 -14 545 229 94 24 chr6 30397700 30397768 -158881786 - L1MDa LINE L1 -5969 571 509 450 0 0 0 chr6 30397768 30397818 -158881736 + (TG)n Simple_repeat Simple_repeat 2 51 0 545 229 94 24 chr6 30397818 30397919 -158881635 - L1MDa LINE L1 -6031 509 390 2404 55 0 29 chr6 30398074 30398386 -158881168 + AluY SINE Alu 1 303 -8 2305 81 3 0 chr6 30398422 30398749 -158880805 - AluSp SINE Alu 0 330 3 2396 72 3 3 chr6 30398774 30399080 -158880474 - AluY SINE Alu -5 306 1 2379 89 0 0 chr6 30399180 30399482 -158880072 - AluSg SINE Alu -8 302 1 252 319 29 0 chr6 30399483 30399552 -158880002 - HERV16 LTR ERVL -3434 1562 1492 508 296 44 0 chr6 30399698 30399857 -158879697 - HERV16 LTR ERVL -4830 166 1 529 319 13 22 chr6 30399857 30400089 -158879465 - LTR16B LTR ERVL 0 464 235 381 235 59 0 chr6 30400246 30400331 -158879223 - LTR16A LTR ERVL -354 96 7 29 0 0 0 chr6 30400434 30400463 -158879091 + AT_rich Low_complexity Low_complexity 1 29 0 4400 181 47 21 chr6 30400471 30400949 -158878605 - L1MA9 LINE L1 -38 6274 5810 495 0 0 0 chr6 30400949 30401004 -158878550 + (CA)n Simple_repeat Simple_repeat 2 56 0 4400 181 47 21 chr6 30401004 30401460 -158878094 - L1MA9 LINE L1 -502 5810 5316 4146 168 55 62 chr6 30401495 30401932 -158877622 - L1MA9 LINE L1 -810 5336 4898 5537 59 14 15 chr6 30401932 30402644 -158876910 - SVA Other Other 0 1386 676 4146 168 55 62 chr6 30402644 30402892 -158876662 - L1MA9 LINE L1 -1248 4898 4650 255 61 0 0 chr6 30402892 30402925 -158876629 + (TG)n Simple_repeat Simple_repeat 1 33 0 4146 168 55 62 chr6 30402925 30403278 -158876276 - L1MA9 LINE L1 -1496 4650 4304 678 281 118 30 chr6 30403303 30403972 -158875582 + L1M4 LINE L1 2732 3459 -2687 395 287 13 6 chr6 30404308 30404465 -158875089 - L1MC4a LINE L1 -1956 5852 5695 754 24 0 0 chr6 30404778 30404860 -158874694 + tRNA-Ser-TCA tRNA tRNA 1 82 -3 2040 121 0 0 chr6 30406160 30406440 -158873114 + AluSx SINE Alu 5 284 -28 216 0 0 0 chr6 30406662 30406686 -158872868 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 250 136 0 36 chr6 30406811 30406873 -158872681 + L1MA9 LINE L1 6073 6127 -41 830 153 0 0 chr6 30406879 30406997 -158872557 - FLAM_C SINE Alu -15 118 1 1033 109 69 0 chr6 30407000 30407175 -158872379 + L1MA6 LINE L1 6112 6298 -2 23 54 0 0 chr6 30407362 30407399 -158872155 + AT_rich Low_complexity Low_complexity 1 37 0 2211 84 7 0 chr6 30407628 30407913 -158871641 - AluSc SINE Alu 0 309 23 2099 99 3 7 chr6 30409251 30409534 -158870020 + AluSq SINE Alu 1 282 -31 309 26 0 0 chr6 30409534 30409572 -158869982 + (CA)n Simple_repeat Simple_repeat 1 38 0 280 395 0 18 chr6 30409580 30409694 -158869860 - L2 LINE L2 -22 3250 3139 733 130 0 26 chr6 30410339 30410454 -158869100 + FLAM_A SINE Alu 22 133 -9 2231 93 0 43 chr6 30410695 30411018 -158868536 + AluSx SINE Alu 1 309 -3 413 284 11 103 chr6 30411596 30411638 -158867916 + L1M4 LINE L1 2472 2516 -3630 2322 67 6 29 chr6 30411638 30411953 -158867601 + AluY SINE Alu 1 308 -3 413 284 11 103 chr6 30411953 30412120 -158867434 + L1M4 LINE L1 2516 2655 -3491 1742 124 73 4 chr6 30412120 30412395 -158867159 - AluJb SINE Alu -16 296 3 413 284 11 103 chr6 30412395 30412445 -158867109 + L1M4 LINE L1 2655 2708 -3438 221 0 35 0 chr6 30412447 30412476 -158867078 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1952 81 7 29 chr6 30412621 30413011 -158866543 + AluSp SINE Alu 46 429 0 23 33 0 0 chr6 30413137 30413167 -158866387 + AT_rich Low_complexity Low_complexity 1 30 0 351 0 0 0 chr6 30413305 30413344 -158866210 + (A)n Simple_repeat Simple_repeat 1 39 0 763 12 0 0 chr6 30414345 30414427 -158865127 - tRNA-Ser-TCA tRNA tRNA -3 82 1 432 298 11 11 chr6 30414736 30414914 -158864640 + L1MC4a LINE L1 5695 5872 -1936 283 314 16 16 chr6 30416193 30416314 -158863240 - L1ME4a LINE L1 -226 5895 5775 586 161 0 105 chr6 30416423 30416547 -158863007 + FLAM_C SINE Alu 2 112 -31 254 186 23 128 chr6 30416606 30416650 -158862904 - MER5A DNA MER1_type -1 188 155 2191 78 0 11 chr6 30416650 30416958 -158862596 - AluSc SINE Alu 0 307 3 254 186 23 128 chr6 30416958 30416998 -158862556 - MER5A DNA MER1_type -34 155 112 23 0 0 0 chr6 30417000 30417023 -158862531 + GC_rich Low_complexity Low_complexity 1 23 0 471 250 17 0 chr6 30417027 30417143 -158862411 - MER5A DNA MER1_type -65 124 7 788 0 0 0 chr6 30418259 30418341 -158861213 + tRNA-Ser-TCA tRNA tRNA 1 82 -3 203 183 0 146 chr6 30418634 30418716 -158860838 - MIR SINE MIR -71 191 122 210 190 86 35 chr6 30418993 30419051 -158860503 - MIR SINE MIR -110 98 38 375 23 0 0 chr6 30419263 30419307 -158860247 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 183 80 0 0 chr6 30419655 30419680 -158859874 + (A)n Simple_repeat Simple_repeat 1 25 0 1018 162 68 43 chr6 30419870 30420104 -158859450 + AluJb SINE Alu 1 240 -72 247 150 0 0 chr6 30420158 30420198 -158859356 + U2 snRNA snRNA 1 40 -148 685 14 0 0 chr6 30420322 30420394 -158859160 - tRNA-Gln-CAG tRNA tRNA -3 72 1 1454 67 0 0 chr6 30421238 30421417 -158858137 + AluY SINE Alu 133 311 0 613 299 74 44 chr6 30421745 30421758 -158857796 + L1M4 LINE L1 2476 2487 -3659 2246 61 6 96 chr6 30421758 30422101 -158857453 + AluSx SINE Alu 1 312 0 613 299 74 44 chr6 30422101 30422792 -158856762 + L1M4 LINE L1 2487 3201 -2945 956 150 75 6 chr6 30422815 30422988 -158856566 - L1MB3 LINE L1 -3 6180 5996 379 232 18 18 chr6 30423015 30423127 -158856427 + L1M4 LINE L1 4616 4727 -1419 367 309 46 21 chr6 30423260 30423454 -158856100 + L1M4 LINE L1 4931 5129 -1017 568 245 67 46 chr6 30423455 30423737 -158855817 - HAL1 LINE L1 -1165 1342 1055 262 270 12 62 chr6 30423772 30423891 -158855663 + L1MDa LINE L1 27 587 -5943 2241 192 46 94 chr6 30423934 30424863 -158854691 + L1MD2 LINE L1 4561 5424 -742 1178 219 84 81 chr6 30424864 30425020 -158854534 + L1MD2 LINE L1 5709 5863 -496 2398 71 0 0 chr6 30425020 30425317 -158854237 - AluY SINE Alu -14 297 1 1178 219 84 81 chr6 30425317 30425566 -158853988 + L1MD2 LINE L1 5863 6115 -244 740 37 0 0 chr6 30425983 30426065 -158853489 - tRNA-Ser-TCC tRNA tRNA -3 82 1 2147 110 0 30 chr6 30427303 30427604 -158851950 + AluSq SINE Alu 1 292 -21 23 0 0 0 chr6 30427607 30427630 -158851924 + AT_rich Low_complexity Low_complexity 1 23 0 2328 99 3 0 chr6 30428050 30428362 -158851192 - AluSp SINE Alu 0 313 1 2290 88 0 22 chr6 30428388 30428707 -158850847 + AluSp SINE Alu 2 313 0 1345 220 13 27 chr6 30428863 30429163 -158850391 - MER90 LTR ERV1 0 614 319 2169 104 0 13 chr6 30429398 30429706 -158849848 - AluSx SINE Alu -8 304 1 1890 87 56 31 chr6 30429896 30430184 -158849370 - AluSc SINE Alu -14 295 1 2285 98 0 3 chr6 30432125 30432431 -158847123 - AluSx SINE Alu -7 305 1 213 204 0 0 chr6 30432489 30432535 -158847019 - MIR SINE MIR -102 106 70 2325 97 0 3 chr6 30433621 30433932 -158845622 - AluSg SINE Alu 0 310 1 956 155 77 0 chr6 30434323 30434478 -158845076 - MER21B LTR ERV1 -373 490 324 243 28 0 0 chr6 30434507 30434543 -158845011 - Alu SINE Alu 0 301 266 536 34 0 159 chr6 30434754 30434842 -158844712 + tRNA-Arg-AGA tRNA tRNA 1 74 -2 229 196 0 20 chr6 30435567 30435618 -158843936 + LTR66 LTR ERVL 390 439 -171 2341 45 0 28 chr6 30436006 30436331 -158843223 + AluY SINE Alu 1 317 0 256 317 70 11 chr6 30436591 30436777 -158842777 - L1M4 LINE L1 -1273 4873 4677 23 54 0 0 chr6 30436869 30436906 -158842648 + AT_rich Low_complexity Low_complexity 1 37 0 1868 149 27 10 chr6 30436982 30437277 -158842277 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr6 30437499 30437527 -158842027 + AT_rich Low_complexity Low_complexity 1 28 0 571 168 65 0 chr6 30437622 30437729 -158841825 + MLT2B2 LTR ERVL 1 114 -401 2133 116 3 26 chr6 30439562 30439873 -158839681 + AluSx SINE Alu 2 305 -7 1961 140 4 0 chr6 30440188 30440467 -158839087 + AluSx SINE Alu 1 280 -32 24 67 0 0 chr6 30440587 30440632 -158838922 + AT_rich Low_complexity Low_complexity 1 45 0 2665 91 19 38 chr6 30440637 30441072 -158838482 + MER4A LTR ERV1 1 443 -221 4063 131 22 5 chr6 30441072 30441696 -158837858 + MER41B LTR ERV1 1 635 0 2665 91 19 38 chr6 30441696 30441732 -158837822 + MER4A LTR ERV1 443 478 -186 2341 88 0 26 chr6 30441732 30442038 -158837516 + AluSp SINE Alu 1 298 -15 2665 91 19 38 chr6 30442038 30442169 -158837385 + MER4A LTR ERV1 478 660 -4 24 0 0 0 chr6 30442434 30442458 -158837096 + AT_rich Low_complexity Low_complexity 1 24 0 1230 202 55 87 chr6 30442467 30442814 -158836740 + MER58B DNA MER1_type 1 336 -5 1964 130 4 0 chr6 30442868 30443172 -158836382 + AluSx SINE Alu 5 309 0 522 322 81 31 chr6 30443214 30443822 -158835732 + HAL1b LINE L1 187 824 -524 778 213 85 69 chr6 30444054 30444352 -158835202 + MER58D DNA MER1_type 108 291 -2129 2035 136 0 19 chr6 30444352 30444660 -158834894 + AluSx SINE Alu 1 302 -10 778 213 85 69 chr6 30444660 30444755 -158834799 + MER58D DNA MER1_type 291 383 -3 2088 159 138 56 chr6 30445201 30445458 -158834096 + MLT1D LTR MaLR 1 236 -269 2281 106 0 10 chr6 30445458 30445770 -158833784 + AluSg SINE Alu 1 309 -1 2088 159 138 56 chr6 30445770 30445977 -158833577 + MLT1D LTR MaLR 236 503 -2 1038 185 110 15 chr6 30446032 30446232 -158833322 - MER20 DNA MER1_type 0 219 1 239 196 59 147 chr6 30446840 30446942 -158832612 - L2 LINE L2 0 3313 3221 1202 208 17 0 chr6 30446959 30447190 -158832364 - MER90 LTR ERV1 0 614 380 897 96 0 0 chr6 30447190 30447315 -158832239 - AluY SINE Alu -12 299 175 1265 101 5 53 chr6 30447325 30447533 -158832021 + AluY SINE Alu 114 311 0 2045 127 0 13 chr6 30447561 30447861 -158831693 - AluSx SINE Alu -16 296 1 585 97 0 0 chr6 30448638 30448710 -158830844 + tRNA-Lys-AAA tRNA tRNA 2 73 -3 2575 36 0 55 chr6 30449600 30449929 -158829625 + AluY SINE Alu 1 311 0 2259 114 0 0 chr6 30450113 30450421 -158829133 + AluSx SINE Alu 1 308 -4 275 306 0 12 chr6 30450652 30450737 -158828817 + CT-rich Low_complexity Low_complexity 2 85 0 180 0 0 0 chr6 30451072 30451092 -158828462 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 262 210 32 0 chr6 30451262 30451324 -158828230 - tRNA-Met-i tRNA tRNA -9 66 3 3963 196 25 28 chr6 30452105 30452922 -158826632 + HERVL74 LTR ERVL 1283 2096 -3589 2213 109 0 0 chr6 30452928 30453222 -158826332 + AluSq SINE Alu 1 294 -19 484 289 57 19 chr6 30453443 30453654 -158825900 + L1MC/D LINE L1 5606 5824 -1984 1350 168 0 22 chr6 30453654 30453886 -158825668 + AluJo SINE Alu 1 227 -85 258 272 72 8 chr6 30454382 30454507 -158825047 + LTR37B LTR ERV1 1 133 -335 314 217 14 29 chr6 30454560 30454700 -158824854 + LTR37A LTR ERV1 115 259 -209 746 113 0 0 chr6 30454720 30454849 -158824705 - AluSg/x SINE Alu 0 315 187 1478 51 4 146 chr6 30454850 30455103 -158824451 - AluSg SINE Alu -93 217 1 2136 78 7 24 chr6 30455603 30455896 -158823658 + AluSp SINE Alu 1 288 -25 29 0 0 0 chr6 30455896 30455925 -158823629 + AT_rich Low_complexity Low_complexity 1 29 0 636 28 0 0 chr6 30456027 30456099 -158823455 - tRNA-Asp-GAC tRNA tRNA -3 72 1 291 270 111 16 chr6 30456372 30456498 -158823056 + L2 LINE L2 2947 3084 -188 1718 227 82 2 chr6 30456802 30457229 -158822325 - MLT1C LTR MaLR -6 461 1 690 271 22 4 chr6 30457532 30457761 -158821793 + L1M4 LINE L1 4479 4711 -1435 2122 125 0 3 chr6 30458010 30458307 -158821247 + AluSq SINE Alu 1 296 -17 492 287 41 28 chr6 30458593 30458781 -158820773 - LTR33A LTR ERVL -299 222 29 481 348 49 52 chr6 30458940 30459268 -158820286 - LTR33A LTR ERVL -196 327 1 385 259 80 70 chr6 30459476 30459973 -158819581 + L1M4 LINE L1 5270 5761 -413 2252 104 3 3 chr6 30460187 30460495 -158819059 + AluSp SINE Alu 1 308 -5 2559 48 0 6 chr6 30460636 30460947 -158818607 + AluY SINE Alu 1 309 -2 678 298 146 22 chr6 30461022 30461391 -158818163 - LTR16A LTR ERVL -6 444 30 299 311 34 14 chr6 30461548 30461696 -158817858 + L1P LINE L1 4878 5028 -1118 1693 246 101 23 chr6 30461920 30462525 -158817029 + L1MC4a LINE L1 5255 5906 -1902 426 149 24 30 chr6 30462537 30462705 -158816849 + (TA)n Simple_repeat Simple_repeat 1 167 0 684 257 110 50 chr6 30462747 30462805 -158816749 + L1MC4a LINE L1 5902 5955 -1853 1974 94 4 0 chr6 30462805 30463059 -158816495 + AluSg SINE Alu 3 257 -53 270 81 0 0 chr6 30463064 30463101 -158816453 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 684 257 110 50 chr6 30463101 30463321 -158816233 + L1MC4a LINE L1 5958 6223 -1585 2206 126 7 0 chr6 30463321 30463631 -158815923 + AluSq SINE Alu 1 312 -1 684 257 110 50 chr6 30463631 30463781 -158815773 + L1MC4a LINE L1 6223 6363 -1445 651 27 0 0 chr6 30464384 30464457 -158815097 - tRNA-Lys-AAA tRNA tRNA -3 73 1 651 0 0 0 chr6 30465391 30465463 -158814091 - tRNA-Met-i tRNA tRNA -3 72 1 288 130 0 0 chr6 30465749 30465795 -158813759 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 704 280 63 109 chr6 30466275 30466796 -158812758 + MER45C DNA AcHobo 3 499 -454 513 216 0 0 chr6 30466804 30466906 -158812648 + MER45C DNA AcHobo 852 953 0 2251 95 3 25 chr6 30467001 30467316 -158812238 + AluSg SINE Alu 1 308 -2 1901 164 50 70 chr6 30467559 30468034 -158811520 + MER31B LTR ERV1 1 466 0 22 56 0 0 chr6 30468053 30468089 -158811465 + AT_rich Low_complexity Low_complexity 1 36 0 2280 116 0 0 chr6 30468134 30468445 -158811109 - AluSq SINE Alu 0 313 3 2236 110 0 16 chr6 30468489 30468806 -158810748 - AluSx SINE Alu 0 312 1 754 113 9 0 chr6 30468982 30469088 -158810466 + U6 snRNA snRNA 1 107 0 323 176 35 120 chr6 30469131 30469186 -158810368 - MER5B DNA MER1_type 0 178 120 1810 159 8 34 chr6 30469186 30469291 -158810263 + MER2 DNA MER2_type 2 108 -236 3479 191 52 64 chr6 30469291 30470272 -158809282 - LTR5 LTR ERVK 0 969 1 1810 159 8 34 chr6 30470272 30470518 -158809036 + MER2 DNA MER2_type 108 344 0 323 176 35 120 chr6 30470518 30470604 -158808950 - MER5B DNA MER1_type -58 120 49 251 253 118 39 chr6 30471336 30471514 -158808040 + LTR37B LTR ERV1 7 198 -270 381 226 65 8 chr6 30471604 30471728 -158807826 + LTR37A LTR ERV1 276 406 -20 2292 86 3 26 chr6 30472049 30472362 -158807192 - AluSx SINE Alu -6 306 1 1325 129 129 16 chr6 30472556 30472811 -158806743 + AluSg SINE Alu 1 284 -26 1433 214 35 86 chr6 30472952 30473250 -158806304 + LTR43 LTR ERV1 96 359 -243 1922 100 0 0 chr6 30473250 30473501 -158806053 + AluSg SINE Alu 1 251 -59 1433 214 35 86 chr6 30473501 30473715 -158805839 + LTR43 LTR ERV1 359 582 -20 315 0 0 0 chr6 30474022 30474057 -158805497 + (A)n Simple_repeat Simple_repeat 1 35 0 252 0 0 0 chr6 30474057 30474085 -158805469 + (TA)n Simple_repeat Simple_repeat 2 29 0 941 145 179 43 chr6 30474535 30474770 -158804784 - AluJo SINE Alu -7 305 39 2232 126 0 19 chr6 30474787 30475105 -158804449 - AluSx SINE Alu 0 312 1 554 9 0 222 chr6 30475138 30475246 -158804308 - tRNA-Leu-TTG tRNA tRNA -2 84 1 22 35 0 0 chr6 30475748 30475777 -158803777 + AT_rich Low_complexity Low_complexity 1 29 0 2192 93 0 10 chr6 30476074 30476364 -158803190 - AluSx SINE Alu -25 287 1 204 40 0 0 chr6 30476364 30476389 -158803165 + (TTA)n Simple_repeat Simple_repeat 2 26 0 2099 111 4 0 chr6 30476389 30476669 -158802885 - AluSx SINE Alu -29 283 3 2425 76 3 0 chr6 30476736 30477037 -158802517 + AluY SINE Alu 1 302 -9 289 275 53 23 chr6 30477154 30477285 -158802269 - L1MC/D LINE L1 -2056 5752 5618 206 250 0 0 chr6 30477846 30477898 -158801656 + T-rich Low_complexity Low_complexity 1 52 0 551 9 0 229 chr6 30478207 30478316 -158801238 - tRNA-Leu-TTG tRNA tRNA -2 84 1 2379 65 0 7 chr6 30479018 30479312 -158800242 - AluSx SINE Alu -20 292 1 255 125 0 0 chr6 30479393 30479433 -158800121 + (A)n Simple_repeat Simple_repeat 1 40 0 2008 88 46 0 chr6 30479565 30479827 -158799727 - AluSg SINE Alu -36 274 1 2378 82 0 10 chr6 30480122 30480427 -158799127 + AluSq SINE Alu 1 302 -11 1479 261 91 63 chr6 30480696 30481083 -158798471 + MLT1G1 LTR MaLR 1 411 -184 1802 173 3 7 chr6 30481083 30481372 -158798182 - AluJb SINE Alu -24 288 1 1479 261 91 63 chr6 30481372 30481554 -158798000 + MLT1G1 LTR MaLR 411 586 -9 299 139 14 0 chr6 30481558 30481614 -158797940 - LTR41 LTR ERVL 0 795 723 953 241 105 30 chr6 30481624 30482152 -158797402 - LTR41 LTR ERVL -157 616 15 2307 98 3 25 chr6 30482445 30482761 -158796793 + AluSq SINE Alu 1 309 -4 872 44 0 9 chr6 30482837 30482951 -158796603 + (GAAA)n Simple_repeat Simple_repeat 2 114 0 716 164 15 22 chr6 30482951 30483085 -158796469 + AluJo/FLAM SINE Alu 1 133 -169 245 91 0 0 chr6 30483085 30483118 -158796436 + FLAM_C SINE Alu 132 164 0 * 1783 170 76 76 chr6 30483114 30483537 -158796017 + MER52A LTR ERV1 1333 1755 0 206 31 0 31 chr6 30484237 30484269 -158795285 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 761 200 130 0 chr6 30484623 30484808 -158794746 - MER3 DNA MER1_type 0 209 1 2125 169 31 78 chr6 30484939 30485131 -158794423 + MSTB1 LTR MaLR 5 204 -228 2176 93 4 0 chr6 30485131 30485411 -158794143 - AluSc SINE Alu -28 281 1 2125 169 31 78 chr6 30485411 30485667 -158793887 + MSTB1 LTR MaLR 204 432 0 410 309 117 61 chr6 30485948 30486340 -158793214 - L2 LINE L2 -35 3278 2865 203 365 42 0 chr6 30486495 30486591 -158792963 + MIR SINE MIR 32 131 -77 1067 170 22 0 chr6 30486718 30486900 -158792654 + MER5A DNA MER1_type 1 186 -3 2462 65 0 40 chr6 30487014 30487337 -158792217 - AluY SINE Alu -1 310 1 699 230 143 80 chr6 30487409 30487709 -158791845 + MER20B DNA MER1_type 79 397 -386 635 152 76 58 chr6 30487734 30487905 -158791649 + MER20B DNA MER1_type 610 783 0 396 235 0 41 chr6 30487959 30488057 -158791497 - MIR SINE MIR -147 115 22 1295 217 94 53 chr6 30488061 30488495 -158791059 + L1MD2 LINE L1 5662 6113 -246 342 0 0 0 chr6 30488716 30488754 -158790800 + (TG)n Simple_repeat Simple_repeat 2 39 0 254 229 86 0 chr6 30489902 30489972 -158789582 - MIR SINE MIR 0 262 187 570 187 66 42 chr6 30489972 30490095 -158789459 + LTR65 LTR ERV1 1 130 -539 2262 114 71 0 chr6 30490095 30490447 -158789107 - MER51B LTR ERV1 0 377 1 570 187 66 42 chr6 30490447 30490489 -158789065 + LTR65 LTR ERV1 130 170 -499 333 152 30 0 chr6 30490597 30490663 -158788891 - MIR SINE MIR -109 153 86 202 357 57 0 chr6 30490729 30490799 -158788755 - MIR SINE MIR -115 93 20 1495 111 27 13 chr6 30490982 30491207 -158788347 + AluSg/x SINE Alu 79 306 -6 199 193 18 18 chr6 30491294 30491351 -158788203 + MIR SINE MIR 172 228 -34 529 122 89 0 chr6 30491686 30491776 -158787778 + MER4A LTR ERV1 1 98 -566 1653 146 168 73 chr6 30491776 30492145 -158787409 + MER4A LTR ERV1 261 664 0 273 246 0 15 chr6 30492235 30492300 -158787254 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 453 273 31 8 chr6 30492457 30492585 -158786969 - L1ME2 LINE L1 -36 6128 5998 3395 72 0 20 chr6 30492586 30493043 -158786511 - LTR7 LTR ERV1 -2 448 1 763 201 87 7 chr6 30493125 30493274 -158786280 + FRAM SINE Alu 1 160 -16 2361 144 28 104 chr6 30493889 30494397 -158785157 + L1MCa LINE L1 299 767 -5659 519 248 64 0 chr6 30494397 30494506 -158785048 + AluJ SINE Alu 54 169 -143 7021 128 201 26 chr6 30494509 30495952 -158783602 - pTR5 LTR ERV1 0 2438 743 779 154 8 0 chr6 30495952 30496075 -158783479 + AluJ SINE Alu 166 289 -23 2355 90 0 7 chr6 30496081 30496381 -158783173 + AluSx SINE Alu 1 298 -14 2058 90 3 68 chr6 30496381 30496703 -158782851 + AluSq SINE Alu 1 301 -12 6286 175 77 59 chr6 30496723 30497168 -158782386 + L1MCa LINE L1 762 1198 -5228 2151 138 0 0 chr6 30497168 30497472 -158782082 + AluSx SINE Alu 1 304 -8 6286 175 77 59 chr6 30497472 30497752 -158781802 + L1MCa LINE L1 1198 1472 -4954 1590 209 24 34 chr6 30497752 30498130 -158781424 - MLT1A2 LTR MaLR 0 374 1 6286 175 77 59 chr6 30498130 30498512 -158781042 + L1MCa LINE L1 1472 1846 -4580 2367 109 0 0 chr6 30498512 30498814 -158780740 + AluSx SINE Alu 1 302 -10 6286 175 77 59 chr6 30498814 30499066 -158780488 + L1MCa LINE L1 1846 2092 -4334 2368 88 7 0 chr6 30499066 30499362 -158780192 + AluSq SINE Alu 1 298 -15 6286 175 77 59 chr6 30499362 30500508 -158779046 + L1MCa LINE L1 2092 3316 -3110 3949 177 77 34 chr6 30500497 30502216 -158777338 + L1MB4 LINE L1 4395 6174 -6 * 257 301 96 51 chr6 30502716 30502872 -158776682 + MER5A DNA MER1_type 27 189 0 768 144 14 14 chr6 30503712 30503858 -158775696 - MIR SINE MIR -22 240 95 2055 81 30 0 chr6 30503860 30504131 -158775423 + AluSq SINE Alu 1 279 -34 2051 86 0 11 chr6 30505532 30505800 -158773754 - AluSq SINE Alu -10 303 39 188 389 53 0 chr6 30506379 30506492 -158773062 - MIR3 SINE MIR -48 160 42 1972 128 14 11 chr6 30506588 30506870 -158772684 - AluSx SINE Alu -17 295 13 403 293 96 6 chr6 30507129 30507286 -158772268 + MIR SINE MIR 49 219 -43 2082 145 129 0 chr6 30507514 30507893 -158771661 + MSTA LTR MaLR 1 428 0 9843 152 31 15 chr6 30507895 30509518 -158770036 + MSTA-int LTR MaLR 3 1651 0 2401 155 89 0 chr6 30509518 30509911 -158769643 + MSTA LTR MaLR 1 428 0 1822 193 242 22 chr6 30510453 30510773 -158768781 - MER20B DNA MER1_type -61 722 474 1977 161 0 7 chr6 30510773 30511077 -158768477 + AluJb SINE Alu 1 302 -10 1822 193 242 22 chr6 30511077 30511348 -158768206 - MER20B DNA MER1_type -309 474 1 2494 127 22 103 chr6 30511389 30511853 -158767701 - MSTB LTR MaLR 0 426 1 2227 107 0 0 chr6 30511967 30512256 -158767298 - AluSx SINE Alu -19 293 5 2490 60 0 3 chr6 30512907 30513207 -158766347 + AluY SINE Alu 1 299 -12 252 300 167 8 chr6 30513430 30513550 -158766004 - MER5A DNA MER1_type -15 174 36 191 77 0 77 chr6 30513550 30513589 -158765965 + (TATG)n Simple_repeat Simple_repeat 3 38 0 375 246 141 7 chr6 30513919 30514061 -158765493 + MIR3 SINE MIR 42 202 -6 212 197 0 28 chr6 30515910 30515981 -158763573 + CT-rich Low_complexity Low_complexity 4 72 0 1500 194 49 7 chr6 30516931 30517219 -158762335 - AluJo SINE Alu -9 303 4 388 250 21 0 chr6 30518128 30518224 -158761330 + MIR SINE MIR 164 261 -1 2204 120 89 124 chr6 30518876 30519065 -158760489 + Tigger3b DNA MER2_type 1 195 -2833 2122 120 7 0 chr6 30519065 30519357 -158760197 + AluSx SINE Alu 1 294 -18 2204 120 89 124 chr6 30519357 30519685 -158759869 + Tigger3b DNA MER2_type 195 500 -731 3963 176 40 1 chr6 30519693 30520339 -158759215 - HERVL18 LTR ERVL -2659 3388 2718 1433 162 11 2 chr6 30520336 30520610 -158758944 - HERVL18 LTR ERVL -3595 2452 2119 * 1053 164 14 19 chr6 30520609 30520957 -158758597 - HERVL18 LTR ERVL -4237 1810 1401 * 922 213 18 0 chr6 30520999 30521168 -158758386 - HERVL18 LTR ERVL -5382 665 494 * 1475 189 11 11 chr6 30521153 30521438 -158758116 - HERVL18 LTR ERVL -5744 303 19 3374 124 76 44 chr6 30521459 30522054 -158757500 - LTR18B LTR ERVL 0 614 1 2612 55 0 3 chr6 30523547 30523859 -158755695 + AluY SINE Alu 1 311 0 2994 125 31 37 chr6 30524021 30524534 -158755020 + Tigger3b DNA MER2_type 723 1232 0 2150 113 0 0 chr6 30524871 30525162 -158754392 - AluSx SINE Alu -21 291 1 859 181 78 120 chr6 30525330 30525689 -158753865 - MLT1A2 LTR MaLR -5 369 26 1529 121 9 0 chr6 30526677 30526892 -158752662 - LTR62 LTR ERVK -2 717 501 1425 94 146 0 chr6 30526892 30527104 -158752450 - MER4E LTR ERV1 0 779 537 754 188 0 0 chr6 30527107 30527224 -158752330 + FRAM SINE Alu 50 166 -10 2261 80 3 71 chr6 30527285 30527611 -158751943 + AluSp SINE Alu 1 304 -9 629 256 35 42 chr6 30527771 30528056 -158751498 - L1MC5 LINE L1 -33 7928 7646 1820 264 54 34 chr6 30528442 30529064 -158750490 + L2 LINE L2 2491 3131 -182 360 228 24 57 chr6 30529251 30529374 -158750180 + MIR SINE MIR 63 181 -81 403 253 147 0 chr6 30530051 30530146 -158749408 + MIR SINE MIR 11 119 -143 1715 154 104 17 chr6 30530146 30530503 -158749051 - MLT1C LTR MaLR 0 467 80 357 331 39 16 chr6 30530539 30530666 -158748888 + MIR SINE MIR 115 244 -18 210 313 73 10 chr6 30530992 30531088 -158748466 + MIR SINE MIR 40 141 -67 289 250 71 9 chr6 30531151 30531263 -158748291 - MIR SINE MIR -70 192 74 255 315 110 20 chr6 30531887 30532033 -158747521 + MIR3 SINE MIR 36 194 -14 272 239 11 43 chr6 30532064 30532156 -158747398 + L1ME4a LINE L1 5838 5926 -195 420 319 51 2 chr6 30532802 30533091 -158746463 - L1MC/D LINE L1 -646 5518 5255 22 0 0 0 chr6 30533281 30533303 -158746251 + AT_rich Low_complexity Low_complexity 1 22 0 1912 114 10 33 chr6 30533437 30533736 -158745818 - AluSx SINE Alu -18 294 3 525 44 0 0 chr6 30533858 30533926 -158745628 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 1026 264 75 12 chr6 30533954 30534287 -158745267 + L2 LINE L2 2414 2767 -547 284 336 132 23 chr6 30534286 30534506 -158745048 + L2 LINE L2 2910 3153 -160 * 184 182 0 0 chr6 30534544 30534577 -158744977 + L2 LINE L2 3280 3312 -1 3575 161 35 5 chr6 30534879 30535739 -158743815 + L1MC1 LINE L1 5396 6326 -7 596 269 92 17 chr6 30535774 30536012 -158743542 + L1MC5 LINE L1 7187 7442 -519 1297 140 5 19 chr6 30536116 30536330 -158743224 + AluJo SINE Alu 1 211 -101 845 208 0 7 chr6 30536333 30536560 -158742994 + AluJb SINE Alu 145 312 0 4521 128 108 116 chr6 30538306 30539722 -158739832 - pTR5 LTR ERV1 0 2438 743 417 252 100 56 chr6 30539723 30539973 -158739581 + L1MC5 LINE L1 7668 7928 -33 192 305 85 0 chr6 30540501 30540583 -158738971 + L2 LINE L2 3184 3272 0 469 226 73 0 chr6 30541165 30541289 -158738265 + L1MC4a LINE L1 5410 5542 -2266 276 277 143 29 chr6 30541352 30541590 -158737964 + L1MC4a LINE L1 5805 6069 -1739 244 329 192 31 chr6 30541723 30542109 -158737445 + L2 LINE L2 1959 2406 -908 368 218 51 0 chr6 30542130 30542208 -158737346 + MER20B DNA MER1_type 56 137 -646 323 336 130 14 chr6 30542245 30542522 -158737032 + L2 LINE L2 2422 2730 -584 215 232 89 57 chr6 30543032 30543163 -158736391 + MIR SINE MIR 40 179 -29 420 181 14 0 chr6 30543403 30543475 -158736079 + MLT1F1 LTR MaLR 137 209 -358 275 164 137 41 chr6 30544014 30544087 -158735467 + LTR33 LTR ERVL 12 91 -430 3549 118 34 21 chr6 30544093 30544627 -158734927 - MER34 LTR ERV1 -1 541 1 1440 218 137 24 chr6 30544697 30545114 -158734440 + MLT1D LTR MaLR 42 505 0 22 0 0 0 chr6 30545813 30545835 -158733719 + AT_rich Low_complexity Low_complexity 1 22 0 1596 170 44 65 chr6 30546149 30546561 -158732993 - LTR52 LTR ERVL -7 414 12 366 228 133 33 chr6 30546913 30546992 -158732562 + L2 LINE L2 2931 3001 -312 1736 251 78 42 chr6 30546992 30547565 -158731989 + MLT1G1 LTR MaLR 1 594 -1 366 228 133 33 chr6 30547565 30547665 -158731889 + L2 LINE L2 3001 3128 -185 3135 146 43 2 chr6 30547665 30548173 -158731381 - L1MB4 LINE L1 0 6180 5652 854 129 35 6 chr6 30548173 30548343 -158731211 + CT-rich Low_complexity Low_complexity 4 178 0 998 143 0 0 chr6 30548346 30548493 -158731061 - FRAM SINE Alu -7 169 23 5063 195 50 15 chr6 30548495 30550009 -158729545 - L1MB4 LINE L1 -513 5667 4113 647 233 63 30 chr6 30550031 30550275 -158729279 - MER54A LTR ERVL -219 245 80 1369 218 17 70 chr6 30550326 30550498 -158729056 - L1MB4 LINE L1 -2028 4118 3939 2143 108 37 0 chr6 30550498 30550794 -158728760 - AluSx SINE Alu -5 307 1 1369 218 17 70 chr6 30550794 30551024 -158728530 - L1MB4 LINE L1 -2207 3939 3737 181 250 192 29 chr6 30551024 30551128 -158728426 + L2 LINE L2 3121 3241 -72 2440 200 113 41 chr6 30551419 30552003 -158727551 + MLT1E2 LTR MaLR 1 626 0 200 289 89 56 chr6 30552784 30552874 -158726680 - L2 LINE L2 -964 2350 2258 330 308 77 0 chr6 30553376 30553467 -158726087 + MER5A DNA MER1_type 8 105 -84 3936 150 89 11 chr6 30553559 30554213 -158725341 + MER44D DNA MER2_type 1 705 0 221 310 70 0 chr6 30554667 30554738 -158724816 - MIR SINE MIR -139 123 48 2496 58 0 6 chr6 30555052 30555364 -158724190 + AluY SINE Alu 1 310 -1 408 284 95 70 chr6 30555506 30555549 -158724005 + MIR SINE MIR 14 54 -208 1650 179 30 3 chr6 30555549 30555845 -158723709 - AluJb SINE Alu -8 304 1 408 284 95 70 chr6 30555845 30556044 -158723510 + MIR SINE MIR 54 262 0 1607 141 94 4 chr6 30556668 30556924 -158722630 + AluJo SINE Alu 1 279 -33 385 199 14 14 chr6 30556925 30557071 -158722483 + GA-rich Low_complexity Low_complexity 1 146 0 1034 96 13 0 chr6 30557086 30557242 -158722312 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 4081 267 93 43 chr6 30557471 30559183 -158720371 + L2 LINE L2 316 2113 -1201 344 185 46 0 chr6 30559190 30559255 -158720299 + L2 LINE L2 2270 2337 -977 1619 228 39 5 chr6 30559277 30559693 -158719861 + L1ME3A LINE L1 5486 5915 -255 1659 184 68 26 chr6 30559693 30560073 -158719481 + MSTD LTR MaLR 1 396 0 4462 241 96 32 chr6 30560080 30561193 -158718361 + MSTD-int LTR MaLR 255 1476 -259 1554 103 0 0 chr6 30561193 30561387 -158718167 + AluSq SINE Alu 1 194 -119 4462 241 96 32 chr6 30561387 30561665 -158717889 + MSTD-int LTR MaLR 1476 1735 0 873 193 97 78 chr6 30561667 30561761 -158717793 + MSTD LTR MaLR 3 94 -302 2422 100 0 0 chr6 30561761 30562072 -158717482 + AluSq SINE Alu 1 311 -2 873 193 97 78 chr6 30562072 30562246 -158717308 + MSTD LTR MaLR 94 276 -120 283 287 47 78 chr6 30562266 30562395 -158717159 + L1ME3A LINE L1 5968 6092 -78 1431 285 112 19 chr6 30562429 30563096 -158716458 + L2 LINE L2 2335 3052 -261 1871 143 13 17 chr6 30563802 30564102 -158715452 + AluJo SINE Alu 1 299 -13 356 203 80 116 chr6 30564507 30564616 -158714938 - MER5B DNA MER1_type -33 145 40 1563 172 57 25 chr6 30564616 30564970 -158714584 + MLT1A1 LTR MaLR 1 365 0 356 203 80 116 chr6 30564970 30564998 -158714556 - MER5B DNA MER1_type -138 40 13 281 340 72 0 chr6 30565374 30565471 -158714083 - MIR3 SINE MIR -36 172 69 4002 180 96 30 chr6 30565473 30566466 -158713088 - MER52A LTR ERV1 -418 1337 217 1944 133 127 8 chr6 30566464 30566826 -158712728 + MSTA LTR MaLR 22 426 -2 * 304 225 44 148 chr6 30566827 30567009 -158712545 + L2 LINE L2 3148 3310 -3 300 303 30 26 chr6 30567196 30567430 -158712124 - L1MEc LINE L1 -4320 2076 1842 1757 183 6 6 chr6 30567442 30567753 -158711801 + AluSx SINE Alu 1 311 -1 755 343 28 71 chr6 30567914 30568607 -158710947 + L2 LINE L2 2412 3065 -207 2297 107 0 0 chr6 30568607 30568897 -158710657 - AluSx SINE Alu -22 290 1 755 343 28 71 chr6 30568897 30569086 -158710468 + L2 LINE L2 3065 3260 -12 768 248 119 0 chr6 30569683 30569893 -158709661 - MIR SINE MIR -10 252 18 2059 98 7 59 chr6 30569971 30570278 -158709276 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr6 30570402 30570423 -158709131 + AT_rich Low_complexity Low_complexity 1 21 0 1550 150 139 4 chr6 30570445 30570718 -158708836 - AluJb SINE Alu -1 311 2 197 377 29 0 chr6 30571169 30571238 -158708316 + MIR SINE MIR 3 73 -189 1612 99 0 5 chr6 30572017 30572228 -158707326 + AluSp SINE Alu 88 297 -16 231 278 243 6 chr6 30572396 30572565 -158706989 + MIR SINE MIR 50 258 -4 215 77 0 26 chr6 30572853 30572892 -158706662 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 479 261 83 57 chr6 30573014 30573244 -158706310 + HAL1 LINE L1 528 763 -1744 620 298 0 18 chr6 30576135 30576303 -158703251 + MIR3 SINE MIR 10 174 -34 355 230 86 29 chr6 30577216 30577355 -158702199 + L1ME3A LINE L1 4300 4446 -1700 378 313 28 0 chr6 30578130 30578274 -158701280 + L1ME LINE L1 5550 5697 -424 608 153 125 0 chr6 30578299 30578443 -158701111 - L1MA4 LINE L1 -20 6982 6821 3369 128 73 59 chr6 30578443 30579184 -158700370 - Tigger3(Golem) DNA MER2_type -1 3028 2278 583 196 0 0 chr6 30579175 30579282 -158700272 - Tigger3(Golem) DNA MER2_type -2921 108 2 * 12949 173 37 14 chr6 30579282 30581292 -158698262 - L1MA4 LINE L1 -178 6824 4680 3108 103 64 93 chr6 30581292 30581914 -158697640 - LTR14B LTR ERVK 0 608 5 12949 173 37 14 chr6 30581914 30583536 -158696018 - L1MA4 LINE L1 -2322 4680 3098 8879 197 68 83 chr6 30583540 30584525 -158695029 - L1MA4 LINE L1 -3984 2865 1867 2313 114 3 0 chr6 30584525 30584824 -158694730 - AluSg SINE Alu -10 300 1 8879 197 68 83 chr6 30584824 30586745 -158692809 - L1MA4 LINE L1 -4982 1867 1 1815 168 0 43 chr6 30586754 30587076 -158692478 - AluJb SINE Alu -4 308 1 30 45 0 0 chr6 30587185 30587229 -158692325 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr6 30587264 30587289 -158692265 + AT_rich Low_complexity Low_complexity 1 25 0 323 158 49 49 chr6 30588155 30588237 -158691317 + L1MCa LINE L1 1995 2076 -4350 1849 213 5 11 chr6 30588322 30588689 -158690865 + MLT1A1 LTR MaLR 1 365 0 919 190 0 13 chr6 30589519 30589677 -158689877 + AluJb SINE Alu 1 156 -156 2296 98 0 0 chr6 30590276 30590571 -158688983 + AluSg SINE Alu 1 295 -15 390 277 102 7 chr6 30590583 30590720 -158688834 + MIR SINE MIR 61 210 -52 22 56 0 0 chr6 30590735 30590771 -158688783 + AT_rich Low_complexity Low_complexity 1 36 0 2078 121 0 13 chr6 30590773 30591078 -158688476 + AluSq SINE Alu 1 301 -12 572 258 57 18 chr6 30591098 30591381 -158688173 + L1ME3A LINE L1 4517 4810 -1336 2226 96 0 0 chr6 30591672 30592007 -158687547 + AluSc SINE Alu 1 335 0 254 253 70 21 chr6 30592028 30592208 -158687346 + L1ME3A LINE L1 5188 5374 -772 2360 69 3 7 chr6 30592231 30592535 -158687019 + AluY SINE Alu 1 303 -8 815 263 53 88 chr6 30592535 30593081 -158686473 - MLT1G1 LTR MaLR -1 594 1 1008 261 122 30 chr6 30593093 30593216 -158686338 + L1ME3A LINE L1 5403 5513 -657 2282 49 39 0 chr6 30593216 30593500 -158686054 - AluY SINE Alu -16 295 1 1008 261 122 30 chr6 30593500 30593878 -158685676 + L1ME3A LINE L1 5513 5950 -220 2222 121 0 0 chr6 30593938 30594244 -158685310 + AluSx SINE Alu 1 306 -6 285 270 0 0 chr6 30594462 30594536 -158685018 + L1MC4a LINE L1 5824 5897 -1911 327 323 141 5 chr6 30594544 30594742 -158684812 + L1MC4a LINE L1 5955 6179 -1629 1336 263 198 28 chr6 30595193 30596076 -158683478 - L2 LINE L2 -3 3310 2260 2156 118 0 20 chr6 30596076 30596381 -158683173 + AluSx SINE Alu 1 299 -13 1336 263 198 28 chr6 30596381 30596459 -158683095 - L2 LINE L2 -1053 2260 2197 357 289 67 47 chr6 30596594 30596743 -158682811 - L2 LINE L2 -210 3062 2911 351 255 191 13 chr6 30596759 30596916 -158682638 + MER69 DNA AcHobo 167 351 -875 327 194 0 15 chr6 30597496 30597563 -158681991 + tRNA-Met-i tRNA tRNA 1 66 -9 748 233 176 17 chr6 30597871 30598331 -158681223 + Charlie2 DNA MER1_type 2296 2828 -34 2334 65 6 46 chr6 30598505 30598828 -158680726 - AluSx SINE Alu -2 310 1 621 66 0 0 chr6 30599199 30599275 -158680279 + tRNA-Lys-AAA tRNA tRNA 1 76 0 2061 110 0 7 chr6 30599384 30599676 -158679878 - AluSx SINE Alu -22 290 1 419 136 23 0 chr6 30600247 30600335 -158679219 + L1MA5 LINE L1 6204 6293 -7 1774 174 62 30 chr6 30600354 30600792 -158678762 - Charlie1 DNA MER1_type -725 2036 1585 650 0 0 0 chr6 30601205 30601277 -158678277 + tRNA-Met-i tRNA tRNA 1 72 -3 231 88 0 0 chr6 30601883 30601917 -158677637 + (A)n Simple_repeat Simple_repeat 1 34 0 1988 154 3 0 chr6 30602196 30602494 -158677060 + AluSq SINE Alu 1 299 -14 989 221 113 7 chr6 30602700 30603123 -158676431 + MLT1F LTR MaLR 3 542 0 1151 271 57 25 chr6 30603609 30604122 -158675432 - L1ME3A LINE L1 -13 6157 5629 649 313 61 14 chr6 30604120 30604711 -158674843 - L1ME3A LINE L1 -1116 5030 4412 * 426 206 30 6 chr6 30604752 30604869 -158674685 - L1ME3A LINE L1 -5 6165 6051 1986 156 7 0 chr6 30604949 30605244 -158674310 + AluSx SINE Alu 1 297 -15 782 270 36 12 chr6 30605551 30605884 -158673670 - L1ME3A LINE L1 -2502 3644 3304 2139 106 3 0 chr6 30605888 30606214 -158673340 - AluSp SINE Alu 0 327 1 481 212 45 45 chr6 30606216 30606461 -158673093 - L1ME3A LINE L1 -2789 3357 3113 3460 179 4 35 chr6 30606560 30607294 -158672260 - MER49 LTR ERV1 0 923 213 216 0 0 0 chr6 30607294 30607318 -158672236 + (TC)n Simple_repeat Simple_repeat 1 24 0 1063 130 31 0 chr6 30607318 30607479 -158672075 - AluSg/x SINE Alu -14 298 133 716 187 0 0 chr6 30607479 30607602 -158671952 - MER49 LTR ERV1 -701 222 100 29 0 0 0 chr6 30608190 30608219 -158671335 + AT_rich Low_complexity Low_complexity 1 29 0 629 143 18 0 chr6 30608271 30608383 -158671171 - AluJb SINE Alu 0 312 199 318 141 0 0 chr6 30610295 30610352 -158669202 + MLT2C1 LTR ERVL 350 397 0 2929 226 28 44 chr6 30610352 30611200 -158668354 + L1ME2 LINE L1 608 1442 -5100 2112 112 7 0 chr6 30611200 30611485 -158668069 + AluSx SINE Alu 15 301 -11 754 209 70 10 chr6 30611486 30611687 -158667867 + L1ME2 LINE L1 5559 5771 -873 510 227 140 58 chr6 30611700 30611734 -158667820 + L1ME2 LINE L1 6353 6383 -279 2114 128 26 0 chr6 30611734 30612038 -158667516 + AluSx SINE Alu 1 312 0 510 227 140 58 chr6 30612038 30612221 -158667333 + L1ME2 LINE L1 6383 6600 -62 194 0 39 0 chr6 30612221 30612247 -158667307 + (TG)n Simple_repeat Simple_repeat 2 28 0 510 227 140 58 chr6 30612247 30612306 -158667248 + L1ME2 LINE L1 6600 6653 -9 24 0 0 0 chr6 30612944 30612968 -158666586 + AT_rich Low_complexity Low_complexity 1 24 0 1866 97 0 4 chr6 30613029 30613277 -158666277 + AluSx SINE Alu 63 309 -3 22 80 0 0 chr6 30613294 30613344 -158666210 + AT_rich Low_complexity Low_complexity 1 50 0 224 286 0 0 chr6 30613390 30613453 -158666101 + A-rich Low_complexity Low_complexity 2 64 0 2623 43 0 0 chr6 30613479 30613778 -158665776 + AluY SINE Alu 1 299 -12 780 241 103 5 chr6 30614388 30614612 -158664942 - MIR SINE MIR -5 257 12 203 325 0 0 chr6 30614615 30614692 -158664862 + A-rich Low_complexity Low_complexity 1 77 0 669 227 0 15 chr6 30614796 30614928 -158664626 - MER45A DNA AcHobo -4 174 45 1145 188 420 2 chr6 30615962 30616495 -158663059 + LTR50 LTR ERVL 40 795 0 616 284 51 37 chr6 30616527 30616823 -158662731 - L1ME3A LINE L1 -224 6015 5716 1737 197 9 6 chr6 30616842 30617187 -158662367 - L1ME3A LINE L1 -1111 5104 4759 7100 236 50 22 chr6 30617200 30619537 -158660017 - L1MEc LINE L1 -2133 4082 1734 1869 256 49 13 chr6 30619554 30620290 -158659264 - L1M4c LINE L1 -4437 2126 1227 3026 141 57 101 chr6 30620304 30621173 -158658381 - L1MC2 LINE L1 -360 5984 5163 1832 196 23 53 chr6 30625562 30625996 -158653558 - L1ME1 LINE L1 -175 5991 5571 451 307 16 0 chr6 30626005 30626132 -158653422 - MIR SINE MIR -87 175 47 4227 132 30 80 chr6 30626132 30626968 -158652586 + L1MA7 LINE L1 5496 6289 -2 212 174 0 87 chr6 30626995 30627041 -158652513 - MIR SINE MIR -211 51 10 219 272 246 0 chr6 30627118 30627232 -158652322 + MIR SINE MIR 92 233 -29 634 200 186 14 chr6 30627617 30627827 -158651727 - MER33 DNA MER1_type -23 301 56 1355 153 33 0 chr6 30627827 30628042 -158651512 - AluJb SINE Alu -4 308 87 278 227 76 0 chr6 30628046 30628112 -158651442 - MER3 DNA MER1_type -98 111 41 2600 40 0 0 chr6 30628680 30628981 -158650573 + AluY SINE Alu 1 301 -10 224 214 18 18 chr6 30629517 30629573 -158649981 + CT-rich Low_complexity Low_complexity 2 57 0 860 224 61 55 chr6 30629578 30629890 -158649664 - L1ME3 LINE L1 -4 6158 5845 1644 138 6 77 chr6 30629908 30630242 -158649312 + AluJb SINE Alu 1 312 0 230 234 62 0 chr6 30630272 30630336 -158649218 - L1ME3 LINE L1 -2158 5837 5770 563 84 0 0 chr6 30630402 30630473 -158649081 + tRNA-Met-i tRNA tRNA 2 72 -3 971 214 0 0 chr6 30630810 30630978 -158648576 + MER2 DNA MER2_type 1 168 -177 260 98 0 0 chr6 30630979 30631020 -158648534 + Charlie3 DNA MER1_type 1 41 -2669 * 529 76 0 0 chr6 30631018 30631084 -158648470 + Charlie3 DNA MER1_type 2637 2702 -8 884 152 73 6 chr6 30631093 30631257 -158648297 + MER2 DNA MER2_type 171 345 0 893 140 53 41 chr6 30631606 30631647 -158647907 - AluJo SINE Alu -139 173 134 2468 70 3 0 chr6 30631647 30631947 -158647607 - AluSq SINE Alu -12 301 1 893 140 53 41 chr6 30631947 30632076 -158647478 - AluJo SINE Alu -178 134 1 625 240 159 35 chr6 30632359 30632617 -158646937 + L1MC4a LINE L1 5739 6028 -1780 893 202 179 18 chr6 30632627 30632850 -158646704 + AluY SINE Alu 2 260 -51 298 298 10 87 chr6 30632929 30633137 -158646417 + L1MC4a LINE L1 6348 6539 -1269 189 0 0 0 chr6 30633137 30633158 -158646396 + (A)n Simple_repeat Simple_repeat 1 21 0 2219 86 3 20 chr6 30633194 30633496 -158646058 + AluSp SINE Alu 1 297 -16 3383 248 65 52 chr6 30633498 30634010 -158645544 + L1MC4 LINE L1 6586 7090 -952 2214 105 0 25 chr6 30634010 30634325 -158645229 - AluSg SINE Alu -3 307 1 3383 248 65 52 chr6 30634325 30635241 -158644313 + L1MC4 LINE L1 7090 8032 -10 2165 106 3 3 chr6 30635260 30635563 -158643991 + AluSx SINE Alu 1 303 -9 352 221 76 15 chr6 30635584 30635715 -158643839 - L1MC5 LINE L1 -68 7893 7755 750 24 0 0 chr6 30636184 30636266 -158643288 - tRNA-Ser-AGC tRNA tRNA -3 82 1 1099 214 78 43 chr6 30636743 30637116 -158642438 - Charlie2 DNA MER1_type -318 2544 2159 * 1224 220 90 51 chr6 30637115 30637547 -158642007 - Charlie2b DNA MER1_type -1515 1267 819 659 42 0 0 chr6 30638757 30638829 -158640725 - tRNA-Gln-CAG tRNA tRNA -3 72 1 316 294 34 17 chr6 30639178 30639297 -158640257 - MIR SINE MIR -26 236 116 303 49 0 0 chr6 30639705 30639746 -158639808 + (CA)n Simple_repeat Simple_repeat 2 42 0 204 40 0 0 chr6 30640134 30640159 -158639395 + (GAA)n Simple_repeat Simple_repeat 2 26 0 554 82 0 0 chr6 30640297 30640370 -158639184 - tRNA-Ile-ATT tRNA tRNA -4 73 1 258 285 77 50 chr6 30640995 30641216 -158638338 - L1MC4a LINE L1 -1790 6018 5792 573 66 0 26 chr6 30641224 30641300 -158638254 + L1PA7 LINE L1 6077 6150 -4 2121 128 3 0 chr6 30641316 30641620 -158637934 + AluSx SINE Alu 1 305 -7 184 189 156 90 chr6 30642095 30642217 -158637337 - L2 LINE L2 -316 2956 2827 316 353 0 8 chr6 30642367 30642489 -158637065 - L2 LINE L2 -515 2799 2679 612 82 0 0 chr6 30643563 30643636 -158635918 - tRNA-Val-GTG tRNA tRNA -3 73 1 381 349 96 65 chr6 30644527 30644945 -158634609 - L2 LINE L2 -6 3266 2836 204 125 0 0 chr6 30646347 30646379 -158633175 + (TTTC)n Simple_repeat Simple_repeat 4 35 0 417 251 79 23 chr6 30646442 30646657 -158632897 + L1M4 LINE L1 5001 5227 -919 2048 138 7 0 chr6 30646839 30647171 -158632383 - AluSq SINE Alu 0 334 1 2165 81 11 0 chr6 30647267 30647540 -158632014 - AluSg SINE Alu -30 280 5 4212 48 21 0 chr6 30648677 30649157 -158630397 - LTR2B LTR ERV1 0 490 1 871 108 8 0 chr6 30649774 30649903 -158629651 + AluSp/q SINE Alu 172 301 -12 587 107 0 0 chr6 30650102 30650177 -158629377 - tRNA-Ile-ATT tRNA tRNA -2 75 1 2349 65 10 3 chr6 30650243 30650534 -158629020 - AluSp SINE Alu -20 293 1 7681 98 23 7 chr6 30650534 30651597 -158627957 + HSMAR1 DNA Mariner 208 1287 0 306 0 0 0 chr6 30652031 30652065 -158627489 + (CA)n Simple_repeat Simple_repeat 2 35 0 271 203 40 40 chr6 30652412 30652589 -158626965 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 938 151 102 15 chr6 30652781 30652828 -158626726 - L1M2 LINE L1 -525 5775 5734 1480 155 83 35 chr6 30652828 30653118 -158626436 + AluSg SINE Alu 1 304 -6 938 151 102 15 chr6 30653118 30653276 -158626278 - L1M2 LINE L1 -566 5734 5552 893 179 20 20 chr6 30653265 30653460 -158626094 - L1M2 LINE L1 -2567 3579 3385 * 643 55 0 0 chr6 30653919 30653992 -158625562 + tRNA-Val-GTG tRNA tRNA 1 73 -3 216 0 0 0 chr6 30654734 30654758 -158624796 + (T)n Simple_repeat Simple_repeat 1 24 0 717 314 18 13 chr6 30654996 30655222 -158624332 + LTR16A LTR ERVL 71 297 -153 2709 36 0 0 chr6 30655312 30655619 -158623935 - AluY SINE Alu -4 307 1 817 340 64 14 chr6 30655650 30656235 -158623319 + L2 LINE L2 2658 3274 -39 2137 110 0 26 chr6 30656290 30656600 -158622954 + AluSx SINE Alu 1 302 -10 240 343 10 10 chr6 30656601 30656703 -158622851 + L2 LINE L2 2698 2799 -515 2319 88 0 0 chr6 30656759 30657065 -158622489 - AluSx SINE Alu -6 306 1 181 171 24 0 chr6 30657169 30657210 -158622344 + L2 LINE L2 2830 2871 -401 2116 86 36 13 chr6 30657521 30657824 -158621730 + AluSq SINE Alu 1 310 -3 228 337 12 12 chr6 30657884 30657967 -158621587 + L1MC4a LINE L1 5550 5632 -2176 340 273 41 35 chr6 30658061 30658233 -158621321 + L1MC4a LINE L1 5770 5942 -1866 38 0 0 0 chr6 30658744 30658782 -158620772 + AT_rich Low_complexity Low_complexity 1 38 0 679 27 0 0 chr6 30658977 30659052 -158620502 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 209 77 51 0 chr6 30659625 30659664 -158619890 + T-rich Low_complexity Low_complexity 2 42 0 628 80 0 0 chr6 30660227 30660302 -158619252 - tRNA-Ile-ATT tRNA tRNA -2 75 1 1014 291 50 48 chr6 30660457 30660917 -158618637 - L1MEc LINE L1 -5894 502 42 263 173 109 36 chr6 30662083 30662193 -158617361 - MER113 DNA MER1_type? -282 239 122 2048 76 7 35 chr6 30662272 30662680 -158616874 + AluSg SINE Alu 1 400 0 2630 48 0 6 chr6 30663107 30663418 -158616136 - AluY SINE Alu -2 309 1 481 42 0 106 chr6 30663622 30663811 -158615743 + (TA)n Simple_repeat Simple_repeat 2 170 0 244 132 0 73 chr6 30663822 30663890 -158615664 + (TA)n Simple_repeat Simple_repeat 1 63 0 2046 131 3 0 chr6 30664166 30664471 -158615083 - AluSq SINE Alu -7 306 1 234 62 0 0 chr6 30664863 30664895 -158614659 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 243 0 0 0 chr6 30665802 30665829 -158613725 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 297 275 11 0 chr6 30666261 30666352 -158613202 + L1ME LINE L1 5710 5801 -320 207 88 0 0 chr6 30666633 30666667 -158612887 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2129 95 0 3 chr6 30666746 30667029 -158612525 + AluSx SINE Alu 1 282 -30 387 0 0 0 chr6 30667032 30667075 -158612479 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3249 146 93 30 chr6 30667493 30667822 -158611732 - L1MB3 LINE L1 -24 6159 5852 2091 109 20 16 chr6 30667822 30668125 -158611429 - AluSp SINE Alu -9 304 1 3249 146 93 30 chr6 30668125 30668326 -158611228 - L1MB3 LINE L1 -331 5852 5665 2080 118 13 10 chr6 30668326 30668630 -158610924 + AluSx SINE Alu 1 305 -7 3249 146 93 30 chr6 30668630 30668761 -158610793 - L1MB3 LINE L1 -518 5665 5455 1087 233 25 13 chr6 30668774 30669091 -158610463 + L1ME1 LINE L1 4779 5099 -1047 1987 219 37 39 chr6 30669106 30669291 -158610263 + L1ME1 LINE L1 5476 5660 -506 1658 202 97 13 chr6 30669291 30669634 -158609920 + MLT2D LTR ERVL 1 381 -33 357 24 0 0 chr6 30669634 30669676 -158609878 + (CA)n Simple_repeat Simple_repeat 2 43 0 1658 202 97 13 chr6 30669676 30669714 -158609840 + MLT2D LTR ERVL 381 414 0 1987 219 37 39 chr6 30669714 30670072 -158609482 + L1ME1 LINE L1 5660 6018 -148 2050 167 120 5 chr6 30670072 30670292 -158609262 - MLT1D LTR MaLR 0 505 312 2068 133 0 10 chr6 30670292 30670592 -158608962 - AluSx SINE Alu -15 297 1 2050 167 120 5 chr6 30670592 30670779 -158608775 - MLT1D LTR MaLR -193 312 51 571 211 18 0 chr6 30670779 30670893 -158608661 + L1ME1 LINE L1 6005 6120 -46 1959 149 0 7 chr6 30671404 30671705 -158607849 + AluSx SINE Alu 5 303 -9 2271 111 0 0 chr6 30671869 30672166 -158607388 - AluSx SINE Alu -11 301 5 1957 93 28 75 chr6 30672803 30673124 -158606430 - AluSq SINE Alu -7 306 1 416 158 0 13 chr6 30673255 30673331 -158606223 - tRNA-Ile-ATT tRNA tRNA -2 75 1 1951 75 8 4 chr6 30673977 30674231 -158605323 - AluSq SINE Alu -1 312 58 2155 88 17 7 chr6 30674514 30674808 -158604746 + AluSg SINE Alu 1 297 -13 324 0 0 0 chr6 30674878 30674914 -158604640 + (TG)n Simple_repeat Simple_repeat 2 37 0 2220 111 7 0 chr6 30675295 30675592 -158603962 - AluSq SINE Alu -14 299 1 404 277 142 19 chr6 30675711 30675866 -158603688 + L1M4b LINE L1 99 272 -6587 309 315 61 44 chr6 30675989 30676228 -158603326 + L1M4b LINE L1 640 1115 -5744 2540 186 72 14 chr6 30676490 30677001 -158602553 + MER89 LTR ERV1 1 541 -18 1056 191 46 77 chr6 30677001 30677325 -158602229 + MLT1C LTR MaLR 1 314 -153 346 260 18 41 chr6 30677354 30677523 -158602031 + (TCTCTG)n Simple_repeat Simple_repeat 2 166 0 373 215 25 3 chr6 30677545 30677633 -158601921 + MLT1C LTR MaLR 305 389 -78 317 194 0 0 chr6 30677637 30677699 -158601855 + L1ME3 LINE L1 5899 5960 -202 249 275 157 22 chr6 30677698 30677876 -158601678 + L1M4b LINE L1 3 204 -6655 * 321 242 34 34 chr6 30678065 30678214 -158601340 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 210 71 0 0 chr6 30678234 30678262 -158601292 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 413 239 11 58 chr6 30678338 30678526 -158601028 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 311 351 74 55 chr6 30679649 30679920 -158599634 - L2 LINE L2 -70 3202 2927 320 327 156 65 chr6 30680034 30680355 -158599199 - L2 LINE L2 -19 3253 2904 633 260 18 55 chr6 30680383 30680602 -158598952 - MIR SINE MIR 0 262 52 534 129 108 0 chr6 30680616 30680709 -158598845 - MER53 DNA DNA -84 105 3 503 231 105 0 chr6 30681653 30681796 -158597758 + MIR SINE MIR 73 230 -32 234 220 0 0 chr6 30681893 30681943 -158597611 - L2 LINE L2 -1 3271 3222 467 251 95 10 chr6 30682012 30682207 -158597347 - MIR SINE MIR -23 239 26 298 179 21 63 chr6 30684137 30684232 -158595322 + (CAGAGA)n Simple_repeat Simple_repeat 2 92 0 584 278 102 75 chr6 30684346 30684786 -158594768 - L2 LINE L2 -301 3012 2566 210 279 22 34 chr6 30684794 30684973 -158594581 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 234 342 44 35 chr6 30685473 30685701 -158593853 + L2 LINE L2 3082 3311 -2 703 321 18 21 chr6 30687143 30687423 -158592131 + L2 LINE L2 2884 3162 -151 939 306 115 32 chr6 30687446 30688159 -158591395 + L2 LINE L2 2530 3296 -17 425 324 75 0 chr6 30688308 30688536 -158591018 - L2 LINE L2 -303 3010 2768 2282 91 0 3 chr6 30688551 30688847 -158590707 + AluSg SINE Alu 1 295 -15 776 197 72 0 chr6 30688907 30689059 -158590495 + FAM SINE Alu 4 166 -9 808 177 61 80 chr6 30689151 30689291 -158590263 + L1MC/D LINE L1 5284 5425 -827 198 0 0 0 chr6 30689291 30689313 -158590241 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2217 96 7 0 chr6 30689316 30689596 -158589958 - AluSx SINE Alu -30 282 1 808 177 61 80 chr6 30689596 30689711 -158589843 + L1MC/D LINE L1 5427 5576 -676 2609 213 13 13 chr6 30689723 30690356 -158589198 - L1MB7 LINE L1 0 6184 5552 2387 83 0 0 chr6 30691858 30692146 -158587408 + AluSc SINE Alu 2 289 -20 2388 168 37 56 chr6 30692371 30692890 -158586664 - LTR22 LTR ERVK 0 509 1 1872 95 0 20 chr6 30693337 30693590 -158585964 + AluSg SINE Alu 1 248 -62 317 263 0 12 chr6 30693590 30693670 -158585884 + Charlie2 DNA MER1_type 100 178 -2684 203 45 68 45 chr6 30693687 30693731 -158585823 + A-rich Low_complexity Low_complexity 1 45 0 964 271 80 28 chr6 30693852 30694354 -158585200 + Charlie2 DNA MER1_type 1862 2403 -459 2509 77 0 0 chr6 30694354 30694653 -158584901 + AluSg SINE Alu 1 299 -11 964 271 80 28 chr6 30694653 30694766 -158584788 + Charlie2 DNA MER1_type 2403 2509 -353 277 171 163 39 chr6 30694794 30694923 -158584631 + Charlie2 DNA MER1_type 2677 2821 -41 198 143 0 0 chr6 30696378 30696413 -158583141 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 677 0 0 0 chr6 30696617 30696692 -158582862 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 207 336 48 8 chr6 30697196 30697321 -158582233 + L2 LINE L2 3181 3310 -3 2501 52 7 0 chr6 30697890 30698180 -158581374 + AluSp SINE Alu 1 292 -21 250 129 32 0 chr6 30698181 30698243 -158581311 + (TA)n Simple_repeat Simple_repeat 1 64 0 247 170 0 19 chr6 30698251 30698304 -158581250 - L1MC4 LINE L1 -1339 6703 6652 2345 90 0 3 chr6 30698336 30698646 -158580908 + AluSc SINE Alu 1 309 0 643 41 0 0 chr6 30698680 30698753 -158580801 - tRNA-Val-GTT tRNA tRNA -3 73 1 222 174 0 0 chr6 30699344 30699390 -158580164 + (TA)n Simple_repeat Simple_repeat 2 47 0 372 242 15 76 chr6 30699610 30699742 -158579812 + L2 LINE L2 3190 3313 0 2910 12 0 3 chr6 30701008 30701327 -158578227 - AluYb8 SINE Alu 0 318 1 2321 101 0 10 chr6 30701372 30701679 -158577875 + AluSg SINE Alu 1 304 -6 438 322 82 18 chr6 30701709 30702115 -158577439 - L1ME LINE L1 -353 5817 5389 2250 117 0 0 chr6 30702184 30702491 -158577063 - AluSg SINE Alu -3 307 1 2363 80 0 3 chr6 30702697 30702996 -158576558 - AluSx SINE Alu -14 298 1 240 33 0 0 chr6 30703265 30703295 -158576259 + Alu SINE Alu 194 223 -80 284 162 30 45 chr6 30703626 30703704 -158575850 + tRNA-Ser-TCA tRNA tRNA 3 79 -6 2398 79 0 0 chr6 30704010 30704302 -158575252 + AluSq SINE Alu 18 309 -4 1072 129 0 0 chr6 30704304 30704459 -158575095 + AluSg/x SINE Alu 136 290 -22 286 299 0 0 chr6 30705087 30705154 -158574400 - L1MC/D LINE L1 -759 5600 5534 * 776 229 103 91 chr6 30705124 30705443 -158574111 - L1M3 LINE L1 -599 5584 5262 1957 81 81 8 chr6 30705465 30705725 -158573829 - AluSx SINE Alu -19 293 15 381 221 0 84 chr6 30705833 30705858 -158573696 + Tigger5 DNA MER2_type 2237 2263 -60 2344 54 3 44 chr6 30705858 30706173 -158573381 - AluY SINE Alu -9 302 1 381 221 0 84 chr6 30706173 30706242 -158573312 + Tigger5 DNA MER2_type 2263 2323 0 229 230 14 0 chr6 30706242 30706316 -158573238 - L1M3 LINE L1 -1807 4339 4265 1182 194 40 73 chr6 30706353 30706543 -158573011 - L1M3 LINE L1 -1865 4281 4109 2389 40 0 80 chr6 30706543 30706867 -158572687 + AluY SINE Alu 1 298 -13 1182 194 40 73 chr6 30706867 30707073 -158572481 - L1M3 LINE L1 -2037 4109 3898 651 191 0 0 chr6 30707073 30707188 -158572366 + MSTB2 LTR MaLR 343 457 0 293 206 32 16 chr6 30707409 30707472 -158572082 - L1MCc LINE L1 -5956 467 404 1073 127 97 2 chr6 30707472 30707715 -158571839 - MER2 DNA MER2_type -21 324 22 672 240 30 59 chr6 30707866 30708068 -158571486 - L1MCc LINE L1 -6137 286 92 2053 121 0 57 chr6 30708068 30708400 -158571154 - AluSq SINE Alu 0 313 1 672 240 30 59 chr6 30708400 30708468 -158571086 - L1MCc LINE L1 -6331 92 24 334 183 12 12 chr6 30708653 30708735 -158570819 + GA-rich Low_complexity Low_complexity 4 85 0 332 304 99 28 chr6 30708740 30708921 -158570633 + HAL1 LINE L1 99 292 -2215 1754 241 85 26 chr6 30709400 30709894 -158569660 - L1MDa LINE L1 -5987 553 31 1981 128 11 3 chr6 30709901 30710079 -158569475 - AluSx SINE Alu 0 309 127 207 0 0 0 chr6 30710079 30710102 -158569452 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1981 128 11 3 chr6 30710102 30710230 -158569324 - AluSx SINE Alu -182 127 1 1590 188 66 43 chr6 30710267 30710647 -158568907 + MLT1B LTR MaLR 1 390 0 229 196 22 0 chr6 30710680 30710726 -158568828 + GA-rich Low_complexity Low_complexity 4 50 0 216 0 0 0 chr6 30710896 30710920 -158568634 + (A)n Simple_repeat Simple_repeat 1 24 0 2492 76 3 0 chr6 30710923 30711226 -158568328 + AluSp SINE Alu 4 307 -6 2209 129 0 0 chr6 30711485 30711795 -158567759 + AluSq SINE Alu 1 310 -3 1992 138 0 25 chr6 30711816 30712135 -158567419 + AluSx SINE Alu 1 311 -1 581 227 31 25 chr6 30712302 30712465 -158567089 + LTR41 LTR ERVL 16 179 -594 1994 114 3 24 chr6 30712550 30712866 -158566688 + AluSp SINE Alu 4 313 0 2212 80 28 7 chr6 30713073 30713362 -158566192 - AluSq SINE Alu -18 295 1 238 214 0 0 chr6 30713679 30713721 -158565833 - tRNA-Thr-ACT tRNA tRNA -21 56 15 1847 121 22 4 chr6 30713816 30714089 -158565465 + AluSx SINE Alu 1 278 -34 306 0 0 0 chr6 30714089 30714123 -158565431 + (TC)n Simple_repeat Simple_repeat 1 34 0 234 0 0 0 chr6 30714122 30714148 -158565406 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 393 114 166 74 chr6 30714340 30714401 -158565153 - Charlie5 DNA MER1_type -38 2586 2532 610 244 0 8 chr6 30714401 30714532 -158565022 - FLAM_A SINE Alu -3 130 1 393 114 166 74 chr6 30714532 30714645 -158564909 - Charlie5 DNA MER1_type -92 2532 2396 417 204 0 0 chr6 30714780 30714868 -158564686 - L1MB5 LINE L1 -287 5887 5800 2297 104 0 0 chr6 30714869 30715166 -158564388 - AluSq SINE Alu -16 297 1 502 235 34 8 chr6 30715331 30715450 -158564104 - FLAM_A SINE Alu -10 123 2 187 286 45 45 chr6 30715753 30715865 -158563689 + MER5A DNA MER1_type 77 188 -1 1925 129 0 26 chr6 30716665 30716788 -158562766 + AluSx SINE Alu 9 134 -178 198 0 0 0 chr6 30716788 30716810 -158562744 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1925 129 0 26 chr6 30716810 30716997 -158562557 + AluSx SINE Alu 134 311 -1 1379 142 27 108 chr6 30717034 30717181 -158562373 + AluYb8 SINE Alu 1 158 -160 306 0 0 0 chr6 30717181 30717215 -158562339 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2155 87 0 0 chr6 30717219 30717496 -158562058 - AluSq SINE Alu -36 277 1 1379 142 27 108 chr6 30717496 30717675 -158561879 + AluYb8 SINE Alu 161 305 -13 1765 169 60 23 chr6 30717716 30718034 -158561520 - L1MB7 LINE L1 -19 6165 5860 199 0 65 0 chr6 30718034 30718065 -158561489 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2039 105 7 21 chr6 30718065 30718351 -158561203 - AluSx SINE Alu -30 282 1 1765 169 60 23 chr6 30718351 30718380 -158561174 - L1MB7 LINE L1 -323 5861 5804 2102 89 7 13 chr6 30718488 30718791 -158560763 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr6 30718971 30719001 -158560553 + AT_rich Low_complexity Low_complexity 1 30 0 643 27 0 0 chr6 30719016 30719089 -158560465 - tRNA-Arg-CGC tRNA tRNA -3 73 1 2350 75 0 7 chr6 30719157 30719462 -158560092 - AluSx SINE Alu -5 307 5 2258 84 19 10 chr6 30719780 30720089 -158559465 + AluSx SINE Alu 1 312 0 643 27 0 0 chr6 30720345 30720418 -158559136 + tRNA-Arg-CGC tRNA tRNA 1 73 -3 2147 96 0 0 chr6 30720446 30720726 -158558828 - AluSq SINE Alu -33 280 1 180 0 0 0 chr6 30720726 30720746 -158558808 + (T)n Simple_repeat Simple_repeat 1 20 0 2255 92 3 3 chr6 30720783 30721078 -158558476 - AluSp SINE Alu -14 299 5 2258 93 13 13 chr6 30721408 30721721 -158557833 + AluSq SINE Alu 1 313 0 623 112 92 0 chr6 30721802 30721900 -158557654 + FLAM_C SINE Alu 2 108 -35 21 36 0 0 chr6 30722003 30722031 -158557523 + AT_rich Low_complexity Low_complexity 1 28 0 219 130 0 43 chr6 30722276 30722322 -158557232 + (TTTTTG)n Simple_repeat Simple_repeat 1 44 0 2433 52 0 26 chr6 30723069 30723377 -158556177 - AluY SINE Alu -11 300 1 1014 73 55 49 chr6 30723569 30723733 -158555821 - AluSg/x SINE Alu -10 299 135 325 89 0 0 chr6 30723733 30723778 -158555776 - Alu SINE Alu -257 45 1 1247 119 0 0 chr6 30723790 30723967 -158555587 - AluSg/x SINE Alu 0 310 134 524 105 0 0 chr6 30724330 30724406 -158555148 - tRNA-Ser-TCC tRNA tRNA -2 83 8 6058 248 45 40 chr6 30724510 30725306 -158554248 - ERVL LTR ERVL -1774 3751 2961 2403 42 29 29 chr6 30725306 30725617 -158553937 - AluY SINE Alu 0 311 1 6058 248 45 40 chr6 30725617 30725913 -158553641 - ERVL LTR ERVL -2564 2961 2668 1884 123 77 25 chr6 30725913 30726239 -158553315 + MER61A LTR ERV1 1 343 0 6058 248 45 40 chr6 30726239 30727269 -158552285 - ERVL LTR ERVL -2857 2668 1562 496 165 62 0 chr6 30727270 30727367 -158552187 - MLT1B LTR MaLR 0 390 288 628 41 0 0 chr6 30728101 30728174 -158551380 + tRNA-Val-GTG tRNA tRNA 1 73 -3 388 145 0 16 chr6 30728666 30728728 -158550826 + MER31A LTR ERV1 223 283 -202 2957 125 15 9 chr6 30728772 30729236 -158550318 - MER31A LTR ERV1 -18 467 1 634 113 0 57 chr6 30729236 30729336 -158550218 + MLT2D LTR ERVL 321 414 0 2175 121 0 10 chr6 30729438 30729745 -158549809 + AluSx SINE Alu 1 304 -8 181 263 221 0 chr6 30729937 30730032 -158549522 - L2 LINE L2 -56 3257 3142 1239 218 79 40 chr6 30730032 30730504 -158549050 + MER39 LTR ERV1 1 559 -6 2058 128 7 14 chr6 30730664 30730954 -158548600 + AluSx SINE Alu 1 288 -24 1750 177 30 7 chr6 30731276 30731581 -158547973 + AluJb SINE Alu 1 312 0 2084 119 3 0 chr6 30731963 30732258 -158547296 + AluSq SINE Alu 1 296 -17 2400 75 0 3 chr6 30732260 30732565 -158546989 + AluY SINE Alu 1 304 -7 803 222 57 84 chr6 30732569 30732694 -158546860 + L1M4 LINE L1 3670 3797 -2349 1872 167 44 37 chr6 30732694 30732871 -158546683 + MLT1B LTR MaLR 1 175 -215 1846 124 7 49 chr6 30732871 30733178 -158546376 + AluSx SINE Alu 1 294 -18 1872 167 44 37 chr6 30733178 30733383 -158546171 + MLT1B LTR MaLR 175 386 -4 803 222 57 84 chr6 30733383 30733417 -158546137 + L1M4 LINE L1 3797 3830 -2316 1869 144 0 35 chr6 30733417 30733730 -158545824 + AluSx SINE Alu 1 302 -10 803 222 57 84 chr6 30733730 30733938 -158545616 + L1M4 LINE L1 3830 4028 -2118 535 133 89 0 chr6 30733938 30734028 -158545526 + MER4A LTR ERV1 1 98 -566 1901 113 158 78 chr6 30734028 30734132 -158545422 + MER4A LTR ERV1 261 355 -309 2656 61 3 0 chr6 30734132 30734444 -158545110 - AluSp SINE Alu 0 313 1 1901 113 158 78 chr6 30734444 30734712 -158544842 + MER4A LTR ERV1 355 663 -1 2246 95 0 3 chr6 30734768 30735100 -158544454 + AluSp SINE Alu 2 332 0 1038 230 8 70 chr6 30735116 30735516 -158544038 + L1M4 LINE L1 4975 5349 -797 2268 105 30 0 chr6 30735524 30735828 -158543726 - AluSq SINE Alu 0 313 1 2122 147 0 0 chr6 30735838 30736144 -158543410 - AluSg SINE Alu -1 309 4 1996 129 10 16 chr6 30736146 30736456 -158543098 - AluSx SINE Alu -4 308 1 2043 128 3 3 chr6 30736633 30736931 -158542623 + AluSx SINE Alu 1 298 -14 302 322 70 0 chr6 30737408 30737551 -158542003 + L1MCc LINE L1 17 169 -6254 3865 108 4 21 chr6 30737982 30738540 -158541014 - LTR14 LTR ERVK 0 548 1 1865 129 7 11 chr6 30738548 30738828 -158540726 - HERVKC4 LTR ERVK -18 5244 4966 5305 156 43 37 chr6 30738828 30739829 -158539725 + LTR13 LTR ERVK 1 1007 0 945 145 6 13 chr6 30739863 30740022 -158539532 + LTR13 LTR ERVK 850 1007 0 34296 98 11 33 chr6 30740022 30742043 -158537511 - HERVKC4 LTR ERVK -291 4971 2908 1473 46 6 11 chr6 30742043 30742218 -158537336 + AluY SINE Alu 1 174 -137 34296 98 11 33 chr6 30742218 30742373 -158537181 - HERVKC4 LTR ERVK -2354 2908 2751 2465 61 0 13 chr6 30742373 30742685 -158536869 - AluY SINE Alu -3 308 1 34296 98 11 33 chr6 30742685 30742838 -158536716 - HERVKC4 LTR ERVK -2511 2751 2596 2335 87 0 3 chr6 30742838 30743137 -158536417 - AluY SINE Alu -13 298 1 2394 46 39 23 chr6 30743139 30743445 -158536109 - AluY SINE Alu 0 311 1 34296 98 11 33 chr6 30743445 30746191 -158533363 - HERVKC4 LTR ERVK -2667 2595 1 3830 104 13 20 chr6 30746191 30746741 -158532813 - LTR14 LTR ERVK 0 548 3 2099 108 7 7 chr6 30747035 30747330 -158532224 - AluY SINE Alu -11 300 6 1171 228 30 23 chr6 30747723 30748025 -158531529 - LTR10B LTR ERV1 -1 546 217 6596 270 52 32 chr6 30748104 30750273 -158529281 - HERVI LTR ERV1 0 6649 4437 11664 274 54 49 chr6 30750279 30755389 -158524165 - HERVI LTR ERV1 -2395 5390 188 1769 99 0 0 chr6 30755389 30755611 -158523943 - AluSg/x SINE Alu -10 300 79 11664 274 54 49 chr6 30755611 30755798 -158523756 - HERVI LTR ERV1 -7597 188 3 1262 191 42 4 chr6 30755800 30756036 -158523518 - LTR10B LTR ERV1 -3 544 300 29 0 0 0 chr6 30756847 30756876 -158522678 + AT_rich Low_complexity Low_complexity 1 29 0 677 0 0 0 chr6 30756973 30757048 -158522506 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 189 154 0 0 chr6 30757057 30757096 -158522458 + T-rich Low_complexity Low_complexity 1 39 0 207 100 0 0 chr6 30757193 30757223 -158522331 + (T)n Simple_repeat Simple_repeat 1 30 0 2403 103 0 0 chr6 30757380 30757692 -158521862 - AluSx SINE Alu 0 312 1 2877 16 0 0 chr6 30758261 30758572 -158520982 - AluYa5 SINE Alu 0 311 1 257 318 0 28 chr6 30758792 30758899 -158520655 + L2 LINE L2 3210 3313 0 1280 254 125 14 chr6 30758945 30759296 -158520258 + MLT1E2 LTR MaLR 235 624 -2 418 263 41 26 chr6 30759560 30759754 -158519800 - L1MC4a LINE L1 -1759 6049 5853 2266 89 0 20 chr6 30759816 30760119 -158519435 - AluSq SINE Alu -16 297 1 283 158 0 18 chr6 30760315 30760372 -158519182 - LTR37A LTR ERV1 0 426 371 467 167 0 0 chr6 30760383 30760479 -158519075 + L1MB5 LINE L1 4395 4490 -1656 1734 143 0 83 chr6 30760675 30761011 -158518543 + AluSx SINE Alu 3 310 -2 231 36 0 0 chr6 30761326 30761354 -158518200 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2395 74 3 3 chr6 30761367 30761665 -158517889 - AluSx SINE Alu -14 298 1 23 33 0 0 chr6 30761766 30761796 -158517758 + AT_rich Low_complexity Low_complexity 1 30 0 4603 197 36 21 chr6 30761979 30762017 -158517537 + L1MB5 LINE L1 4478 4514 -1660 1963 203 27 24 chr6 30762017 30762058 -158517496 - MLT2D LTR ERVL 0 414 375 330 26 0 0 chr6 30762058 30762097 -158517457 + (TG)n Simple_repeat Simple_repeat 2 40 0 1963 203 27 24 chr6 30762097 30762169 -158517385 - MLT2D LTR ERVL -39 375 305 2583 46 13 0 chr6 30762169 30762293 -158517261 + AluY SINE Alu 1 122 -189 231 36 0 0 chr6 30762293 30762321 -158517233 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2583 46 13 0 chr6 30762321 30762503 -158517051 + AluY SINE Alu 122 311 0 1963 203 27 24 chr6 30762503 30762801 -158516753 - MLT2D LTR ERVL -109 305 1 4603 197 36 21 chr6 30762801 30762967 -158516587 + L1MB5 LINE L1 4514 4676 -1498 2333 131 0 0 chr6 30762974 30763286 -158516268 + AluSx SINE Alu 1 312 0 4603 197 36 21 chr6 30763009 30763794 -158515760 + L1MB5 LINE L1 4676 5262 -912 1577 127 162 4 chr6 30763794 30764053 -158515501 + AluSg SINE Alu 1 300 0 4603 197 36 21 chr6 30764053 30764972 -158514582 + L1MB5 LINE L1 5262 6166 -8 877 207 141 27 chr6 30764978 30765141 -158514413 - LTR37A LTR ERV1 -54 372 229 2173 152 25 57 chr6 30765141 30765581 -158513973 - MSTB LTR MaLR 0 426 1 877 207 141 27 chr6 30765581 30765751 -158513803 - LTR37A LTR ERV1 -197 229 1 2122 224 53 82 chr6 30765825 30766509 -158513045 - MER31-int LTR ERV1 -736 4200 3543 1772 151 37 3 chr6 30766509 30766668 -158512886 + AluSx SINE Alu 1 153 -159 1879 83 4 8 chr6 30766668 30766922 -158512632 + AluSc SINE Alu 1 253 -56 1772 151 37 3 chr6 30766922 30767061 -158512493 + AluSx SINE Alu 153 309 -3 2122 224 53 82 chr6 30767061 30767200 -158512354 - MER31-int LTR ERV1 -1393 3543 3401 1737 170 0 38 chr6 30767337 30767654 -158511900 + AluJo SINE Alu 1 305 -7 548 207 13 45 chr6 30768102 30768283 -158511271 - MER31-int LTR ERV1 -1648 3288 3171 2217 106 0 0 chr6 30768317 30768600 -158510954 + AluSx SINE Alu 1 283 -29 1366 141 12 19 chr6 30768600 30768856 -158510698 - L1MC2 LINE L1 -334 6010 5757 2270 112 3 0 chr6 30768947 30769251 -158510303 + AluSp SINE Alu 1 305 -8 21 0 0 0 chr6 30769396 30769417 -158510137 + AT_rich Low_complexity Low_complexity 1 21 0 2991 252 54 4 chr6 30769537 30770486 -158509068 - L1MC4 LINE L1 -188 7854 6859 1335 170 94 11 chr6 30770613 30770921 -158508633 + MER61B LTR ERV1 1 425 0 650 253 26 13 chr6 30771117 30771271 -158508283 + MIR SINE MIR 21 176 -86 180 320 77 0 chr6 30772985 30773063 -158506491 - MIR SINE MIR -63 145 62 195 355 0 0 chr6 30773535 30773611 -158505943 - MIR SINE MIR -108 154 79 237 266 142 0 chr6 30773926 30774039 -158505515 + LTR65 LTR ERV1 35 163 -506 191 384 95 26 chr6 30774390 30774960 -158504594 - L2 LINE L2 -534 2780 2172 376 267 0 0 chr6 30776346 30776436 -158503118 + L1MC/D LINE L1 5574 5663 -2145 22 0 0 0 chr6 30776687 30776709 -158502845 + AT_rich Low_complexity Low_complexity 1 22 0 201 162 0 0 chr6 30777383 30777420 -158502134 + GA-rich Low_complexity Low_complexity 4 40 0 2368 97 3 0 chr6 30777971 30778279 -158501275 + AluSg SINE Alu 1 309 -1 260 291 89 63 chr6 30779284 30779442 -158500112 + MIR SINE MIR 78 239 -23 2344 79 0 10 chr6 30779583 30779888 -158499666 + AluSq SINE Alu 1 302 -11 310 176 24 0 chr6 30780110 30780195 -158499359 + (CAT)n Simple_repeat Simple_repeat 3 89 0 1705 214 36 44 chr6 30780620 30781124 -158498430 - L1MA9 LINE L1 -38 6274 5775 267 31 0 0 chr6 30781134 30781151 -158498403 + (CA)n Simple_repeat Simple_repeat 1 49 0 267 31 0 0 chr6 30781151 30781183 -158498371 + (CA)n Simple_repeat Simple_repeat 2 33 0 2140 119 0 39 chr6 30781200 30781511 -158498043 - AluSx SINE Alu -11 301 3 426 225 0 0 chr6 30781615 30781704 -158497850 - L1MA9 LINE L1 -612 5700 5612 207 218 0 0 chr6 30781704 30781759 -158497795 + (TATG)n Simple_repeat Simple_repeat 2 56 0 626 14 0 0 chr6 30783596 30783668 -158495886 + tRNA-Pro-CCG tRNA tRNA 1 72 -3 35 78 0 0 chr6 30784843 30784920 -158494634 + AT_rich Low_complexity Low_complexity 1 77 0 353 353 31 24 chr6 30784992 30785247 -158494307 + HAL1 LINE L1 604 860 -1647 463 261 48 96 chr6 30785316 30785461 -158494093 + HAL1 LINE L1 1017 1145 -1362 3313 150 30 45 chr6 30785461 30786194 -158493360 + L1MC2 LINE L1 5622 6343 -1 463 261 48 96 chr6 30786194 30786320 -158493234 + HAL1 LINE L1 1145 1275 -1232 219 204 0 0 chr6 30786335 30786384 -158493170 + A-rich Low_complexity Low_complexity 3 51 0 1330 116 0 0 chr6 30786384 30786565 -158492989 + AluSg/x SINE Alu 128 308 -1 729 293 84 21 chr6 30786653 30786941 -158492613 + HAL1 LINE L1 1350 1683 -824 1738 33 0 19 chr6 30786941 30787153 -158492401 + AluY SINE Alu 96 303 -8 729 293 84 21 chr6 30787153 30787349 -158492205 + HAL1 LINE L1 1683 1865 -642 310 284 41 15 chr6 30787432 30787629 -158491925 + HAL1 LINE L1 2115 2316 -191 384 312 144 23 chr6 30787656 30788085 -158491469 - MLT1J LTR MaLR -30 481 1 305 242 118 33 chr6 30788093 30788246 -158491308 + HAL1 LINE L1 2338 2503 -4 723 12 0 0 chr6 30789160 30789242 -158490312 + tRNA-Ser-AGC tRNA tRNA 1 82 -3 198 0 0 0 chr6 30789810 30789832 -158489722 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2018 88 17 7 chr6 30789857 30790151 -158489403 + AluSx SINE Alu 1 297 -15 4003 104 13 17 chr6 30790428 30791002 -158488552 + LTR43 LTR ERV1 1 574 -28 2050 130 7 0 chr6 30791002 30791301 -158488253 + AluSx SINE Alu 2 302 -10 4003 104 13 17 chr6 30791301 30791330 -158488224 + LTR43 LTR ERV1 574 602 0 1979 113 3 3 chr6 30791350 30791659 -158487895 - AluSx SINE Alu 0 309 1 22 88 0 0 chr6 30791662 30791719 -158487835 + AT_rich Low_complexity Low_complexity 1 57 0 671 91 42 54 chr6 30792227 30792642 -158486912 + (TTATA)n Simple_repeat Simple_repeat 1 410 0 376 107 39 51 chr6 30792645 30792823 -158486731 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 * 466 37 32 89 chr6 30792783 30792973 -158486581 + (TA)n Simple_repeat Simple_repeat 2 180 0 441 297 80 6 chr6 30793114 30793315 -158486239 - L1ME3A LINE L1 -224 5946 5762 1458 248 90 53 chr6 30793322 30793381 -158486173 - MLT1E LTR MaLR -8 585 530 2388 100 0 0 chr6 30793381 30793690 -158485864 + AluSc SINE Alu 1 309 0 1458 248 90 53 chr6 30793690 30794194 -158485360 - MLT1E LTR MaLR -63 530 1 640 281 101 40 chr6 30794282 30795198 -158484356 - L1ME3A LINE L1 -253 5917 4965 189 180 0 0 chr6 30795213 30795263 -158484291 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2140 123 0 7 chr6 30795310 30795611 -158483943 + AluSx SINE Alu 5 303 -9 495 238 85 56 chr6 30795618 30795959 -158483595 - L1ME3A LINE L1 -1230 4916 4566 2082 139 0 0 chr6 30795992 30796279 -158483275 + AluSx SINE Alu 1 287 -25 31 0 0 0 chr6 30796459 30796490 -158483064 + AT_rich Low_complexity Low_complexity 1 31 0 1292 161 14 5 chr6 30796737 30796954 -158482600 + MER20 DNA MER1_type 1 219 0 1664 199 28 14 chr6 30797536 30797893 -158481661 + MLT1A1 LTR MaLR 4 365 0 1814 112 0 24 chr6 30797916 30798167 -158481387 + AluSq SINE Alu 1 245 -68 403 320 104 14 chr6 30798429 30798651 -158480903 - MIR SINE MIR -20 242 1 639 182 123 12 chr6 30798863 30799033 -158480521 + MER53 DNA DNA 1 189 0 2303 85 3 38 chr6 30799100 30799417 -158480137 - AluSg SINE Alu -4 306 1 196 345 69 11 chr6 30800390 30800477 -158479077 - L2 LINE L2 -188 3084 2993 1155 150 5 5 chr6 30801648 30801835 -158477719 - U2 snRNA snRNA -1 187 1 1535 206 32 9 chr6 30801872 30802211 -158477343 - MER65C LTR ERV1 0 461 115 833 206 39 0 chr6 30802265 30802445 -158477109 - MER66B-int LTR ERV1 -1690 4986 4800 441 191 53 15 chr6 30802748 30802879 -158476675 - MER66B-int LTR ERV1 -2577 4021 3886 2485 81 0 0 chr6 30802888 30803195 -158476359 + AluY SINE Alu 1 307 -4 1199 172 24 97 chr6 30803195 30803350 -158476204 - MER66B-int LTR ERV1 -2512 4164 3999 2262 105 0 13 chr6 30803350 30803663 -158475891 - AluSg SINE Alu -1 309 1 1199 172 24 97 chr6 30803663 30803913 -158475641 - MER66B-int LTR ERV1 -2677 3999 2088 765 132 126 0 chr6 30803990 30804180 -158475374 - MER66B-int LTR ERV1 -6187 1933 1720 4385 217 77 20 chr6 30804185 30805588 -158473966 - MER66B-int LTR ERV1 -3839 2837 1305 274 200 62 0 chr6 30806231 30806296 -158473258 - MER66B-int LTR ERV1 -6410 266 198 291 184 0 0 chr6 30806391 30806440 -158473114 - MER66B LTR ERV1 -9 477 429 619 150 164 116 chr6 30806993 30807239 -158472315 - MER41B LTR ERV1 -182 443 210 2126 117 0 0 chr6 30807239 30807541 -158472013 - AluSx SINE Alu 0 302 1 1630 178 3 24 chr6 30807545 30807837 -158471717 - AluJb SINE Alu -18 294 9 619 150 164 116 chr6 30807837 30807946 -158471608 - MER41B LTR ERV1 -417 208 100 22 70 0 0 chr6 30808324 30808367 -158471187 + AT_rich Low_complexity Low_complexity 1 43 0 509 239 57 88 chr6 30808394 30808499 -158471055 - L1ME2 LINE L1 -11 6153 6046 2328 104 0 0 chr6 30808499 30808798 -158470756 + AluSx SINE Alu 2 300 -12 509 239 57 88 chr6 30808798 30808989 -158470565 - L1ME2 LINE L1 -118 6046 5866 1382 241 13 6 chr6 30809088 30809403 -158470151 + MLT1E LTR MaLR 277 593 0 1708 152 9 81 chr6 30809408 30809731 -158469823 + AluJo SINE Alu 1 300 -12 4826 218 60 35 chr6 30809744 30810605 -158468949 - L1ME2 LINE L1 -332 5834 4997 205 29 59 0 chr6 30810605 30810639 -158468915 + (TA)n Simple_repeat Simple_repeat 2 37 0 4826 218 60 35 chr6 30810639 30811653 -158467901 - L1ME2 LINE L1 -1169 4997 3888 2551 111 57 0 chr6 30811653 30812042 -158467512 + LTR57 LTR ERVL 1 411 0 4826 218 60 35 chr6 30812042 30812313 -158467241 - L1ME2 LINE L1 -2278 3888 3625 1022 220 5 0 chr6 30812326 30812526 -158467028 - MER58A DNA MER1_type -23 201 1 901 250 53 35 chr6 30812801 30813164 -158466390 + L1ME LINE L1 5283 5656 -506 2143 113 0 7 chr6 30813164 30813456 -158466098 + AluSc SINE Alu 1 290 -19 901 250 53 35 chr6 30813456 30813551 -158466003 + L1ME LINE L1 5656 5748 -414 21 36 0 0 chr6 30813783 30813811 -158465743 + AT_rich Low_complexity Low_complexity 1 28 0 1321 175 70 49 chr6 30813819 30814105 -158465449 + AluSp SINE Alu 2 293 -20 36 70 0 0 chr6 30814134 30814205 -158465349 + AT_rich Low_complexity Low_complexity 1 71 0 1495 182 24 0 chr6 30814655 30814908 -158464646 + AluJo SINE Alu 24 282 -30 1961 129 44 3 chr6 30815049 30815344 -158464210 + AluSx SINE Alu 1 307 -5 2285 89 3 0 chr6 30815704 30815996 -158463558 - AluSg SINE Alu -17 293 1 392 276 79 16 chr6 30816494 30816621 -158462933 + MIR SINE MIR 20 154 -108 2322 89 0 0 chr6 30816675 30816968 -158462586 - AluY SINE Alu -18 293 1 282 250 58 112 chr6 30817793 30818053 -158461501 - L2 LINE L2 -40 3273 3028 384 242 33 0 chr6 30818503 30818594 -158460960 - MER67B LTR ERV1 0 661 568 * 1376 169 108 18 chr6 30818579 30818857 -158460697 - MER67A LTR ERV1 -240 303 1 323 275 83 63 chr6 30819361 30819758 -158459796 - L1MC5 LINE L1 -62 7899 7495 304 267 95 8 chr6 30819749 30819891 -158459663 - L1MC5 LINE L1 -1046 6765 6611 * 2215 135 0 0 chr6 30819896 30820208 -158459346 - AluSx SINE Alu 0 312 1 615 294 114 55 chr6 30820488 30821032 -158458522 - ERVL LTR ERVL -829 4935 4360 859 310 52 34 chr6 30821060 30821557 -158457997 - ERVL LTR ERVL -1496 4268 3763 286 208 0 0 chr6 30821605 30821658 -158457896 - MIR SINE MIR 0 262 210 2035 121 3 19 chr6 30821795 30822110 -158457444 - AluSx SINE Alu -2 310 1 2131 103 17 0 chr6 30823331 30823621 -158455933 + AluSx SINE Alu 1 295 -17 2493 54 0 0 chr6 30826470 30826767 -158452787 - AluY SINE Alu -14 297 1 583 217 188 52 chr6 30826800 30827205 -158452349 - Charlie4a DNA MER1_type -12 496 37 27 0 0 0 chr6 30827617 30827644 -158451910 + AT_rich Low_complexity Low_complexity 1 27 0 229 324 93 0 chr6 30827659 30827695 -158451859 - L2 LINE L2 -760 2554 2523 3867 141 67 2 chr6 30827695 30828291 -158451263 - MER41B LTR ERV1 0 635 1 229 324 93 0 chr6 30828291 30828362 -158451192 - L2 LINE L2 -791 2523 2437 1274 197 54 26 chr6 30828512 30828997 -158450557 - MER34 LTR ERV1 0 542 11 566 171 197 7 chr6 30829121 30829273 -158450281 - MER67C LTR ERV1 0 710 530 * 1043 187 142 24 chr6 30829243 30829574 -158449980 - MER67C LTR ERV1 -338 372 3 1246 231 102 21 chr6 30830078 30830670 -158448884 - LTR48B LTR ERV1 0 644 3 269 231 90 75 chr6 30832429 30832563 -158446991 - L1ME LINE L1 -481 5640 5505 405 234 159 59 chr6 30832584 30832823 -158446731 - L1ME LINE L1 -757 5389 5127 217 227 186 0 chr6 30833163 30833260 -158446294 - MIR SINE MIR -49 213 99 293 79 0 0 chr6 30833318 30833356 -158446198 - LTR56 LTR ERV1 -58 387 350 350 214 78 10 chr6 30833755 30833858 -158445696 + Charlie5 DNA MER1_type 14 123 -2489 905 234 135 6 chr6 30833860 30834125 -158445429 + Charlie5 DNA MER1_type 2234 2552 -72 2034 89 38 21 chr6 30834125 30834416 -158445138 - AluSx SINE Alu -14 298 3 905 234 135 6 chr6 30834416 30834483 -158445071 + Charlie5 DNA MER1_type 2552 2609 -15 2170 117 7 0 chr6 30834491 30834789 -158444765 - AluSg SINE Alu -10 300 1 1947 133 7 13 chr6 30834920 30835220 -158444334 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr6 30835701 30835724 -158443830 + (A)n Simple_repeat Simple_repeat 1 23 0 2078 125 0 0 chr6 30836034 30836315 -158443239 + AluSx SINE Alu 1 281 -31 1489 142 12 20 chr6 30836649 30836902 -158442652 - AluSx SINE Alu -12 300 50 387 0 0 0 chr6 30837150 30837193 -158442361 + (CA)n Simple_repeat Simple_repeat 2 44 0 2342 49 33 29 chr6 30839672 30839978 -158439576 - AluSx SINE Alu -5 307 1 375 332 83 28 chr6 30840397 30840682 -158438872 + L2 LINE L2 2794 3098 -215 1211 279 67 17 chr6 30840933 30841352 -158438202 - LTR16A LTR ERVL -10 440 1 2224 104 3 0 chr6 30841456 30841753 -158437801 - AluSq SINE Alu -2 311 14 585 122 0 0 chr6 30842097 30842171 -158437383 + tRNA-Val-GTG tRNA tRNA 1 74 -2 1391 102 0 0 chr6 30842209 30842395 -158437159 + AluY SINE Alu 122 307 -4 29 28 0 0 chr6 30842835 30842871 -158436683 + AT_rich Low_complexity Low_complexity 1 36 0 225 0 0 0 chr6 30843333 30843358 -158436196 + (A)n Simple_repeat Simple_repeat 1 25 0 299 370 48 0 chr6 30843578 30843743 -158435811 + L2 LINE L2 2925 3097 -175 2017 123 0 7 chr6 30843746 30844046 -158435508 - AluSg SINE Alu -12 298 1 266 88 0 0 chr6 30844075 30844109 -158435445 + U2 snRNA snRNA 1 34 -154 234 95 214 0 chr6 30844109 30844151 -158435403 + U2 snRNA snRNA 7 57 -131 2168 97 17 7 chr6 30844302 30844617 -158434937 + AluSx SINE Alu 1 318 0 296 319 28 14 chr6 30844634 30844775 -158434779 - LTR33 LTR ERVL -77 444 302 * 400 241 106 71 chr6 30844773 30844899 -158434655 - LTR33 LTR ERVL -345 176 41 2437 91 0 0 chr6 30844899 30845206 -158434348 + AluSg SINE Alu 1 307 -3 400 241 106 71 chr6 30845206 30845249 -158434305 - LTR33 LTR ERVL -480 41 1 1715 180 0 40 chr6 30845541 30845864 -158433690 + AluJb SINE Alu 1 310 -2 212 0 36 0 chr6 30846049 30846077 -158433477 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 825 337 22 16 chr6 30846077 30846448 -158433106 - ERVL LTR ERVL -663 5101 4729 365 164 68 0 chr6 30846450 30846523 -158433031 - MLT1A1 LTR MaLR -287 78 1 692 293 102 25 chr6 30846523 30846923 -158432631 - L2 LINE L2 -1312 2002 1572 2120 109 0 0 chr6 30847419 30847764 -158431790 + AluY SINE Alu 1 345 0 22 0 0 0 chr6 30847938 30847960 -158431594 + AT_rich Low_complexity Low_complexity 1 22 0 1428 191 0 12 chr6 30847960 30848212 -158431342 - AluJo SINE Alu -25 287 39 2235 114 13 0 chr6 30848543 30849003 -158430551 + AluSx SINE Alu 1 464 0 620 126 0 0 chr6 30849121 30849208 -158430346 + AluS SINE Alu 2 88 -224 695 0 0 0 chr6 30849981 30850053 -158429501 + tRNA-His-CAC tRNA tRNA 1 72 -3 2131 131 0 0 chr6 30850879 30851170 -158428384 + AluSx SINE Alu 4 294 -18 180 250 0 79 chr6 30851219 30851295 -158428259 - L3 LINE CR1 -351 1226 1157 194 327 10 30 chr6 30852045 30852146 -158427408 + MIR SINE MIR 104 202 -60 378 308 34 14 chr6 30853694 30853840 -158425714 + L2 LINE L2 3165 3313 0 656 40 0 0 chr6 30854125 30854199 -158425355 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 2492 87 0 0 chr6 30855453 30855763 -158423791 + AluSg SINE Alu 1 310 0 212 193 18 35 chr6 30856039 30856096 -158423458 + A-rich Low_complexity Low_complexity 4 59 0 2129 103 32 0 chr6 30856106 30856388 -158423166 + AluSx SINE Alu 2 292 -20 231 36 0 0 chr6 30856394 30856422 -158423132 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 23 68 0 0 chr6 30856789 30856833 -158422721 + AT_rich Low_complexity Low_complexity 1 44 0 1077 179 0 0 chr6 30857047 30857209 -158422345 - FRAM SINE Alu 0 166 5 2318 105 0 0 chr6 30857503 30857799 -158421755 - AluSx SINE Alu -16 296 1 603 207 13 45 chr6 30857833 30858014 -158421540 + MER31-int LTR ERV1 3171 3288 -1648 1747 171 0 35 chr6 30858462 30858778 -158420776 - AluJo SINE Alu -7 305 1 2468 222 53 82 chr6 30858915 30859054 -158420500 + MER31-int LTR ERV1 3401 3543 -1393 1758 151 37 3 chr6 30859054 30859193 -158420361 - AluSx SINE Alu -3 309 176 1894 83 4 8 chr6 30859193 30859447 -158420107 - AluSc SINE Alu -56 253 1 1758 151 37 3 chr6 30859447 30859606 -158419948 - AluSx SINE Alu -136 176 1 2468 222 53 82 chr6 30859606 30860290 -158419264 + MER31-int LTR ERV1 3543 4200 -736 1020 205 144 26 chr6 30860364 30860534 -158419020 + LTR37A LTR ERV1 1 150 -276 2364 152 25 57 chr6 30860534 30860974 -158418580 + MSTB LTR MaLR 1 426 0 1020 205 144 26 chr6 30860974 30861150 -158418404 + LTR37A LTR ERV1 150 388 -38 4972 185 41 12 chr6 30861150 30862062 -158417492 - L1MB5 LINE L1 -15 6159 5275 1689 127 162 4 chr6 30862062 30862321 -158417233 - AluSg SINE Alu 0 300 1 4972 185 41 12 chr6 30862321 30862832 -158416722 - L1MB5 LINE L1 -899 5275 4676 2317 129 0 0 chr6 30862832 30863142 -158416412 - AluSx SINE Alu -2 310 1 4972 185 41 12 chr6 30863142 30863314 -158416240 - L1MB5 LINE L1 -1498 4676 4511 1775 171 37 0 chr6 30863314 30863612 -158415942 + MLT2D LTR ERVL 1 309 -105 441 101 0 0 chr6 30863613 30863682 -158415872 - Alu SINE Alu 0 310 242 309 200 118 0 chr6 30964295 30964380 -158315174 + MIR SINE MIR 79 173 -89 2341 101 0 3 chr6 30965305 30965602 -158313952 - AluSq SINE Alu -17 296 1 235 298 0 0 chr6 30965843 30965926 -158313628 - MIR SINE MIR -151 111 30 186 271 43 71 chr6 30966292 30966432 -158313122 - MIR SINE MIR -56 206 71 264 348 27 9 chr6 30967049 30967161 -158312393 + MIR3 SINE MIR 82 195 -13 326 214 40 56 chr6 30967721 30967847 -158311707 + L1MC5 LINE L1 7802 7925 -36 310 304 204 30 chr6 30968007 30968208 -158311346 - MIR SINE MIR -7 255 20 180 111 0 0 chr6 30968277 30968304 -158311250 + (A)n Simple_repeat Simple_repeat 1 27 0 345 24 0 0 chr6 30968591 30968633 -158310921 + (TG)n Simple_repeat Simple_repeat 1 42 0 1652 185 0 3 chr6 30968982 30969269 -158310285 + AluJb SINE Alu 1 286 -26 395 303 20 20 chr6 30969653 30969805 -158309749 + L3 LINE CR1 624 775 -802 180 396 141 10 chr6 30969911 30970103 -158309451 + L3 LINE CR1 940 1156 -421 235 287 104 26 chr6 30970962 30971077 -158308477 + MIR SINE MIR 18 141 -67 648 267 27 11 chr6 30971099 30971286 -158308268 - MIR SINE MIR -24 238 49 669 214 69 0 chr6 30972774 30972919 -158306635 - MER5A DNA MER1_type 0 189 35 2603 146 58 37 chr6 30974014 30974501 -158305053 - LTR1 LTR ERV1 -1 784 288 4005 99 232 112 chr6 30974501 30975873 -158303681 - pTR5 LTR ERV1 -11 2427 743 887 165 203 5 chr6 30975910 30976118 -158303436 - LTR1 LTR ERV1 -532 253 7 2563 239 11 11 chr6 30976989 30977546 -158302008 - MER90 LTR ERV1 -18 557 1 1991 127 7 42 chr6 30977985 30978292 -158301262 - AluSx SINE Alu -16 296 1 1915 156 0 3 chr6 30978718 30979006 -158300548 - AluSx SINE Alu -25 287 1 200 128 0 26 chr6 30979332 30979371 -158300183 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 340 157 0 0 chr6 30979634 30979685 -158299869 + Alu SINE Alu 1 51 -249 1828 126 7 14 chr6 30979685 30979962 -158299592 + AluSx SINE Alu 25 299 -13 287 203 54 0 chr6 30979962 30980036 -158299518 - L1MC/D LINE L1 -1971 5837 5760 203 227 173 40 chr6 30980042 30980117 -158299437 - MIR3 SINE MIR -34 174 90 270 0 0 0 chr6 30980793 30980823 -158298731 + (TG)n Simple_repeat Simple_repeat 2 31 0 217 277 185 8 chr6 30982047 30982166 -158297388 - L2 LINE L2 0 3272 3133 238 194 56 0 chr6 30982419 30982491 -158297063 - MER116 DNA Mariner 0 80 5 224 313 45 0 chr6 30982661 30982728 -158296826 - MIR3 SINE MIR -49 159 90 398 203 8 0 chr6 30983394 30983512 -158296042 + (TG)n Simple_repeat Simple_repeat 2 120 0 9183 59 3 150 chr6 30984399 30986020 -158293534 - SVA Other Other -2 1384 2 2122 131 6 6 chr6 30986438 30986751 -158292803 + AluSq SINE Alu 1 313 0 183 175 53 0 chr6 30987556 30987613 -158291941 + (TAA)n Simple_repeat Simple_repeat 2 61 0 878 255 97 90 chr6 30988302 30988737 -158290817 - LTR16A1 LTR ERVL 0 457 20 833 232 51 0 chr6 30988865 30989042 -158290512 + MER5A DNA MER1_type 4 189 0 375 98 0 0 chr6 30989286 30989337 -158290217 + MER31B LTR ERV1 1 51 -415 432 209 0 44 chr6 30989337 30989428 -158290126 + MER21B LTR ERV1 1 87 -776 3481 226 47 14 chr6 30989449 30990216 -158289338 + MER21B LTR ERV1 18 809 -54 1024 219 214 11 chr6 30990237 30990593 -158288961 + MER31B LTR ERV1 39 466 0 1457 158 110 0 chr6 30990907 30991190 -158288364 + AluJb SINE Alu 1 311 0 2188 108 7 3 chr6 30992019 30992316 -158287238 + AluSx SINE Alu 1 298 -14 295 325 67 0 chr6 30993354 30993474 -158286080 - L2 LINE L2 -966 2348 2221 717 303 88 40 chr6 30993927 30994766 -158284788 + L1M4 LINE L1 2261 3139 -3007 253 265 24 0 chr6 30995031 30995114 -158284440 - MIR SINE MIR 0 262 178 8405 64 8 4 chr6 30995484 30996487 -158283067 - LTR13 LTR ERVK 0 1007 1 313 246 0 0 chr6 30996642 30996707 -158282847 - tRNA-Leu-CTT tRNA tRNA -20 65 1 222 118 0 0 chr6 30997784 30997818 -158281736 + (A)n Simple_repeat Simple_repeat 1 34 0 604 81 0 0 chr6 30998466 30998540 -158281014 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 428 86 0 0 chr6 30999012 30999070 -158280484 - AluSx SINE Alu -12 298 241 1514 96 5 0 chr6 30999070 30999269 -158280285 - AluSx SINE Alu -112 200 1 484 344 37 9 chr6 30999416 30999631 -158279923 + MIR SINE MIR 38 258 -4 418 209 47 85 chr6 30999698 30999822 -158279732 + LTR8 LTR ERV1 1 119 -572 2537 110 48 0 chr6 30999822 31000177 -158279377 + MER83 LTR ERV1 1 372 -76 1505 209 26 41 chr6 31000176 31000361 -158279193 + MLT1C LTR MaLR 86 272 -195 * 4525 119 26 39 chr6 31000361 31001061 -158278493 + LTR8 LTR ERV1 1 691 0 1505 209 26 41 chr6 31001061 31001263 -158278291 + MLT1C LTR MaLR 272 467 0 3021 178 71 26 chr6 31001495 31002158 -158277396 + LTR8A LTR ERV1 34 726 -1 603 230 80 49 chr6 31002201 31002427 -158277127 + LTR16A1 LTR ERVL 116 348 -109 786 201 7 7 chr6 31002495 31002639 -158276915 - AluJb SINE Alu -35 277 134 2776 17 0 0 chr6 31002676 31002977 -158276577 + AluYa5 SINE Alu 1 301 -10 204 179 0 0 chr6 31003080 31003119 -158276435 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 2633 208 30 113 chr6 31003123 31003682 -158275872 + L1M4 LINE L1 2759 3221 -2925 241 62 0 104 chr6 31003682 31003730 -158275824 + Alu SINE Alu 130 172 -3 2633 208 30 113 chr6 31003730 31004304 -158275250 + L1M4 LINE L1 3221 3841 -2305 540 242 25 8 chr6 31004327 31004530 -158275024 + L1M4 LINE L1 4369 4574 -1572 605 164 0 0 chr6 31004583 31004687 -158274867 - AluJb SINE Alu 0 312 209 850 304 46 38 chr6 31004695 31005090 -158274464 - MER70-int LTR ERVL -1878 3145 2748 912 220 35 4 chr6 31005091 31005323 -158274231 - L1M4 LINE L1 -1428 4718 4480 551 313 0 0 chr6 31005367 31005533 -158274021 - MER70-int LTR ERVL -2412 2611 2446 561 340 39 12 chr6 31005581 31005840 -158273714 + MER70-int LTR ERVL 562 827 -4196 309 213 62 0 chr6 31006181 31006261 -158273293 - MER70-int LTR ERVL -4457 566 482 958 197 11 0 chr6 31006325 31006508 -158273046 + MLT1D LTR MaLR 321 505 0 362 222 0 0 chr6 31006737 31006809 -158272745 - tRNA-Met-e tRNA tRNA -3 72 1 489 251 8 123 chr6 31007636 31007738 -158271816 - MIR SINE MIR -2 260 199 1416 87 5 5 chr6 31007738 31007923 -158271631 - L1PB1 LINE L1 -3 6148 5964 489 251 8 123 chr6 31007923 31008055 -158271499 - MIR SINE MIR -63 199 53 731 37 0 0 chr6 31008831 31008913 -158270641 + tRNA-Leu-CTT tRNA tRNA 1 82 -3 367 322 157 36 chr6 31009322 31009685 -158269869 - L1MC4a LINE L1 -1908 5900 5494 304 345 24 43 chr6 31009699 31009908 -158269646 - MIR SINE MIR 0 262 58 1654 211 88 55 chr6 31009917 31010406 -158269148 + MLT1D LTR MaLR 1 505 0 22 56 0 0 chr6 31011283 31011319 -158268235 + AT_rich Low_complexity Low_complexity 1 36 0 355 243 162 11 chr6 31011491 31011615 -158267939 + L1M4 LINE L1 4222 4326 -1820 2294 101 0 16 chr6 31011615 31011932 -158267622 + AluSx SINE Alu 1 312 0 355 243 162 11 chr6 31011932 31011992 -158267562 + L1M4 LINE L1 4326 4434 -1712 614 95 0 0 chr6 31012911 31012985 -158266569 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 520 260 4 122 chr6 31013637 31013883 -158265671 - L2 LINE L2 -3 3310 3094 303 343 71 0 chr6 31014130 31014270 -158265284 + MIR SINE MIR 40 189 -73 1120 61 0 0 chr6 31015115 31015247 -158264307 - AluY SINE Alu -179 132 1 4170 164 8 29 chr6 31015483 31016252 -158263302 + L1MC3 LINE L1 6176 6928 -857 475 262 64 14 chr6 31016251 31016392 -158263162 - L1MEc LINE L1 -5990 406 259 * 42 0 0 0 chr6 31016431 31016473 -158263081 + AT_rich Low_complexity Low_complexity 1 42 0 2175 89 7 0 chr6 31016591 31016882 -158262672 - AluSx SINE Alu -19 293 1 4275 133 47 59 chr6 31017620 31019028 -158260526 + pTR5 LTR ERV1 743 2425 -13 201 242 136 0 chr6 31019161 31019227 -158260327 + L2 LINE L2 3208 3282 -31 505 154 209 0 chr6 31019318 31019409 -158260145 - FLAM_C SINE Alu -23 120 11 2011 129 27 7 chr6 31020088 31020383 -158259171 - AluSx SINE Alu -11 301 1 375 260 81 16 chr6 31020543 31020666 -158258888 + MIR SINE MIR 88 218 -44 186 43 0 0 chr6 31020674 31020697 -158258857 + (TTA)n Simple_repeat Simple_repeat 1 23 0 216 0 0 0 chr6 31021178 31021202 -158258352 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr6 31022041 31022062 -158257492 + AT_rich Low_complexity Low_complexity 1 21 0 228 267 52 47 chr6 31022383 31022555 -158256999 - HAL1 LINE L1 0 2507 2335 1937 134 3 72 chr6 31022577 31022912 -158256642 - AluSx SINE Alu 0 312 1 1837 179 0 3 chr6 31023119 31023421 -158256133 - AluJb SINE Alu -11 301 1 388 246 218 0 chr6 31023551 31023730 -158255824 - HAL1 LINE L1 -590 1917 1700 607 242 199 26 chr6 31024190 31024377 -158255177 - HAL1 LINE L1 -805 1702 1549 306 0 0 0 chr6 31024377 31024411 -158255143 + (CA)n Simple_repeat Simple_repeat 2 35 0 607 242 199 26 chr6 31024411 31024640 -158254914 - HAL1 LINE L1 -958 1549 1214 294 73 0 0 chr6 31024933 31024974 -158254580 + (TG)n Simple_repeat Simple_repeat 2 42 0 1618 308 87 28 chr6 31025242 31026347 -158253207 - HAL1 LINE L1 -1337 1170 1 2317 85 0 0 chr6 31026381 31026675 -158252879 + AluSc SINE Alu 1 294 -15 209 324 0 14 chr6 31026868 31026939 -158252615 + L2 LINE L2 3244 3313 0 974 323 62 12 chr6 31027446 31027849 -158251705 + L2 LINE L2 2889 3311 -2 292 305 61 15 chr6 31027868 31027999 -158251555 + MER5A DNA MER1_type 7 143 -46 873 133 0 23 chr6 31028413 31028541 -158251013 + FLAM_C SINE Alu 3 127 -6 5543 157 51 7 chr6 31029325 31030432 -158249122 - L1MC1 LINE L1 0 6333 5180 212 59 29 0 chr6 31031187 31031221 -158248333 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 327 348 19 25 chr6 31032201 31032359 -158247195 + HERV16 LTR ERVL 4101 4257 -1397 849 329 54 14 chr6 31032504 31032930 -158246624 + HERV16 LTR ERVL 4557 4999 -765 540 0 0 0 chr6 31032938 31032998 -158246556 + (GAGAA)n Simple_repeat Simple_repeat 2 61 0 278 253 53 21 chr6 31032998 31033093 -158246461 + HERV16 LTR ERVL 4589 4686 -310 229 283 66 69 chr6 31033202 31033520 -158246034 + L1ME LINE L1 4903 5219 -927 463 252 14 68 chr6 31033523 31033670 -158245884 - MER69A DNA AcHobo 0 177 39 22 35 0 0 chr6 31033814 31033843 -158245711 + AT_rich Low_complexity Low_complexity 1 29 0 360 70 53 0 chr6 31033895 31033952 -158245602 + Alu SINE Alu 240 299 -3 964 313 53 33 chr6 31034262 31034808 -158244746 - LTR67 LTR ERVL 0 557 1 343 254 149 0 chr6 31034904 31035038 -158244516 + L1ME LINE L1 5665 5818 -352 2015 106 3 18 chr6 31035039 31035343 -158244211 + AluSg SINE Alu 1 300 0 22 0 0 0 chr6 31035388 31035410 -158244144 + AT_rich Low_complexity Low_complexity 1 22 0 895 191 0 24 chr6 31035530 31035698 -158243856 - AluJb SINE Alu -3 309 146 5060 130 32 1 chr6 31035698 31036577 -158242977 + L1MA4A LINE L1 5395 6300 -3 445 331 184 4 chr6 31036588 31036860 -158242694 - L2 LINE L2 -778 2536 2216 1652 61 69 48 chr6 31037077 31037308 -158242246 + AluY SINE Alu 58 293 -18 2308 112 3 0 chr6 31037475 31037780 -158241774 + AluSq SINE Alu 1 306 -7 232 302 198 17 chr6 31037819 31037935 -158241619 + MIR SINE MIR 16 152 -56 599 295 47 8 chr6 31037951 31038205 -158241349 - L1ME3A LINE L1 -11 6159 5896 24 0 0 0 chr6 31039624 31039648 -158239906 + AT_rich Low_complexity Low_complexity 1 24 0 1090 228 135 17 chr6 31040659 31041015 -158238539 - L1ME3A LINE L1 -280 5890 5493 376 269 28 0 chr6 31041083 31041191 -158238363 + L1MC4a LINE L1 5451 5561 -2247 760 278 127 50 chr6 31041212 31042072 -158237482 + L1MC4a LINE L1 5693 6618 -1190 273 79 90 11 chr6 31042081 31042170 -158237384 + (TA)n Simple_repeat Simple_repeat 1 96 0 27 73 0 0 chr6 31042180 31042235 -158237319 + AT_rich Low_complexity Low_complexity 1 55 0 267 150 53 86 chr6 31042235 31042358 -158237196 + L1MC4a LINE L1 6595 6668 -1140 4794 129 79 14 chr6 31042358 31043134 -158236420 + LTR12 LTR ERV1 1 826 0 987 210 95 65 chr6 31043146 31043370 -158236184 + L1MC4 LINE L1 6733 6976 -1066 1208 126 239 8 chr6 31043370 31043609 -158235945 + AluSx SINE Alu 1 294 -8 987 210 95 65 chr6 31043609 31043784 -158235770 + L1MC4 LINE L1 6976 7144 -898 495 147 42 11 chr6 31043785 31043880 -158235674 + MIR SINE MIR 114 211 -51 775 188 46 130 chr6 31044615 31044876 -158234678 - MIR SINE MIR -21 241 3 479 286 64 7 chr6 31045216 31045356 -158234198 - MIR SINE MIR -30 232 85 2176 113 3 3 chr6 31045375 31045677 -158233877 + AluSq SINE Alu 1 302 -11 1026 268 83 16 chr6 31047069 31047620 -158231934 + L2 LINE L2 2577 3169 -144 993 263 16 31 chr6 31047677 31047932 -158231622 + MIR SINE MIR 12 262 0 527 229 37 0 chr6 31047941 31048050 -158231504 + L2 LINE L2 3190 3302 -11 193 194 0 0 chr6 31048050 31048086 -158231468 + L2 LINE L2 3278 3313 0 2081 102 39 7 chr6 31048165 31048449 -158231105 + AluSg SINE Alu 1 293 -17 2724 72 16 24 chr6 31048714 31049090 -158230464 + THE1C LTR MaLR 1 373 -2 2354 101 0 0 chr6 31049156 31049463 -158230091 + AluSx SINE Alu 2 308 -4 384 195 24 0 chr6 31049761 31049843 -158229711 - MER112 DNA MER1_type -175 85 2 1839 101 0 4 chr6 31049942 31050189 -158229365 - AluSx SINE Alu -3 309 64 200 266 89 65 chr6 31050485 31050609 -158228945 - MIR SINE MIR -24 238 112 771 284 13 0 chr6 31052137 31052292 -158227262 - L2 LINE L2 0 3272 3116 26 64 0 0 chr6 31053448 31053495 -158226059 + AT_rich Low_complexity Low_complexity 1 47 0 564 234 131 17 chr6 31054127 31054302 -158225252 - MIR3 SINE MIR -6 202 8 25 65 0 0 chr6 31054478 31054524 -158225030 + AT_rich Low_complexity Low_complexity 1 46 0 468 244 85 26 chr6 31054602 31054872 -158224682 - L1MC4a LINE L1 -1777 6031 5746 410 255 28 9 chr6 31055969 31056075 -158223479 + MER5A DNA MER1_type 31 138 -51 592 144 21 0 chr6 31056102 31056199 -158223355 + MER94 DNA DNA 1 99 -35 189 0 0 0 chr6 31057152 31057173 -158222381 + (TTGG)n Simple_repeat Simple_repeat 1 21 0 199 235 0 39 chr6 31058224 31058275 -158221279 - L2 LINE L2 -7 3306 3258 272 319 60 118 chr6 31058814 31059435 -158220119 - L2 LINE L2 -573 2741 2157 2139 101 21 0 chr6 31059467 31059753 -158219801 - AluSp SINE Alu -21 292 1 2144 164 0 0 chr6 31059846 31060194 -158219360 + MER7A DNA MER2_type 1 346 0 212 347 0 25 chr6 31060252 31060373 -158219181 - L2 LINE L2 -1295 2019 1902 2025 88 66 4 chr6 31060458 31060731 -158218823 + AluSq SINE Alu 1 290 -23 183 241 0 56 chr6 31060749 31060788 -158218766 + L2 LINE L2 3212 3249 -23 15471 112 24 13 chr6 31060788 31061945 -158217609 + Tigger1 DNA MER2_type 1 1143 -1275 1703 154 4 4 chr6 31061945 31062228 -158217326 + AluJb SINE Alu 23 305 0 15471 112 24 13 chr6 31062228 31063460 -158216094 + Tigger1 DNA MER2_type 1143 2418 0 183 241 0 56 chr6 31063460 31063474 -158216080 + L2 LINE L2 3249 3262 -10 2844 229 43 69 chr6 31065335 31066770 -158212784 - L1MC5 LINE L1 -49 7912 6503 1569 213 13 16 chr6 31068401 31068711 -158210843 - AluJo SINE Alu -3 309 1 24 53 0 0 chr6 31068898 31068936 -158210618 + AT_rich Low_complexity Low_complexity 1 38 0 930 205 0 0 chr6 31069169 31069335 -158210219 + FRAM SINE Alu 1 164 -12 2321 75 0 0 chr6 31069337 31069642 -158209912 + AluY SINE Alu 1 305 0 801 81 0 0 chr6 31069643 31069754 -158209800 + L1MA1 LINE L1 6192 6302 0 669 182 9 0 chr6 31069811 31069921 -158209633 - FLAM_C SINE Alu -32 111 1 208 237 0 0 chr6 31070159 31070197 -158209357 - MIR SINE MIR -218 44 7 292 214 67 45 chr6 31070229 31070318 -158209236 - MIR SINE MIR -56 206 116 2508 34 10 3 chr6 31070482 31070779 -158208775 + AluY SINE Alu 1 299 -12 300 214 183 1 chr6 31071110 31071204 -158208350 + MER5A DNA MER1_type 62 189 0 261 313 184 6 chr6 31071464 31071627 -158207927 - MIR SINE MIR -50 212 21 900 274 35 52 chr6 31072366 31072691 -158206863 + L1ME LINE L1 205 524 -5546 2117 73 48 0 chr6 31072691 31072986 -158206568 + AluSq SINE Alu 1 308 0 900 274 35 52 chr6 31072986 31073060 -158206494 + L1ME LINE L1 524 598 -5472 350 284 114 34 chr6 31073285 31073461 -158206093 - L2 LINE L2 -92 3221 3032 1737 203 16 0 chr6 31073789 31074095 -158205459 + AluJb SINE Alu 2 312 0 189 340 117 25 chr6 31074129 31074291 -158205263 - MIR3 SINE MIR -29 179 3 1893 110 78 4 chr6 31074356 31074637 -158204917 - AluSg SINE Alu -8 302 1 1578 181 101 21 chr6 31074750 31075088 -158204466 + MLT1A1 LTR MaLR 1 365 0 1868 173 0 29 chr6 31075097 31075410 -158204144 - AluJo SINE Alu -8 304 1 201 175 0 0 chr6 31075424 31075464 -158204090 + CT-rich Low_complexity Low_complexity 2 41 0 3288 152 44 94 chr6 31075499 31076144 -158203410 + L1P4 LINE L1 4379 5055 -1111 866 86 0 0 chr6 31076144 31076260 -158203294 + AluY SINE Alu 191 306 -5 3288 152 44 94 chr6 31076260 31077005 -158202549 + L1P4 LINE L1 5055 5792 -374 1150 131 0 12 chr6 31077008 31077176 -158202378 - AluJo SINE Alu -146 166 1 291 29 0 0 chr6 31077238 31077273 -158202281 - U2 snRNA snRNA -153 35 1 214 297 0 0 chr6 31077278 31077352 -158202202 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 210 259 37 0 chr6 31079653 31079707 -158199847 - MIR SINE MIR -67 141 86 1656 201 60 52 chr6 31079722 31080169 -158199385 + MER74C LTR ERVL 10 460 0 181 286 33 77 chr6 31080169 31080260 -158199294 - MIR SINE MIR -173 89 3 767 229 0 7 chr6 31080780 31080933 -158198621 - FRAM SINE Alu -17 159 8 348 292 64 77 chr6 31081082 31081315 -158198239 - HAL1 LINE L1 -33 2474 2245 2240 95 0 0 chr6 31081901 31082213 -158197341 - AluSx SINE Alu 0 312 1 7157 50 5 0 chr6 31082459 31083731 -158195823 + L1PA6 LINE L1 4876 6151 -3 871 249 82 4 chr6 31083999 31084244 -158195310 - MLT1H1 LTR MaLR 0 555 292 957 244 29 4 chr6 31084362 31084600 -158194954 - MLT1H1 LTR MaLR -311 244 1 336 346 99 43 chr6 31085511 31085884 -158193670 + L2 LINE L2 2122 2515 -799 1142 285 113 23 chr6 31085966 31087329 -158192225 - L1MC/D LINE L1 -743 5403 4203 280 316 31 10 chr6 31088231 31088329 -158191225 - MIR3 SINE MIR -6 202 103 2511 26 0 48 chr6 31088593 31088904 -158190650 - AluY SINE Alu -15 296 1 782 179 0 148 chr6 31090254 31090511 -158189043 + MER20 DNA MER1_type 1 219 0 2070 145 3 0 chr6 31090636 31090947 -158188607 + AluSx SINE Alu 1 312 0 449 336 14 0 chr6 31091167 31091307 -158188247 - L2 LINE L2 -8 3305 3164 1414 128 38 5 chr6 31091308 31091519 -158188035 + AluJo SINE Alu 82 299 -13 393 304 44 39 chr6 31091531 31091735 -158187819 - L2 LINE L2 -158 3155 2951 2354 242 14 74 chr6 31091761 31092304 -158187250 - L2 LINE L2 -454 2860 2375 2293 107 0 0 chr6 31092304 31092602 -158186952 + AluSx SINE Alu 1 298 -14 2354 242 14 74 chr6 31092602 31092830 -158186724 - L2 LINE L2 -939 2375 2135 272 237 86 21 chr6 31093259 31093352 -158186202 - MIR SINE MIR -147 115 17 1528 174 27 8 chr6 31093784 31094043 -158185511 - AluJo SINE Alu -12 300 37 273 324 11 28 chr6 31094050 31094232 -158185322 + CT-rich Low_complexity Low_complexity 2 180 0 275 295 21 21 chr6 31094313 31094408 -158185146 - L2 LINE L2 -221 3051 2957 397 181 16 94 chr6 31094985 31095060 -158184494 + L1MC4 LINE L1 7860 7923 -119 2465 79 7 0 chr6 31095060 31095365 -158184189 + AluSg SINE Alu 1 307 -3 397 181 16 94 chr6 31095365 31095416 -158184138 + L1MC4 LINE L1 7923 7976 -66 253 336 86 52 chr6 31097187 31097303 -158182251 - L2 LINE L2 -14 3258 3139 209 378 54 0 chr6 31097749 31097860 -158181694 - MIR SINE MIR -62 146 30 420 296 79 5 chr6 31097873 31098038 -158181516 - MER5A DNA MER1_type -1 188 1 1296 229 36 22 chr6 31099490 31099853 -158179701 - MER87 LTR ERV1 0 541 174 2191 118 3 7 chr6 31100408 31100712 -158178842 + AluSc SINE Alu 1 303 -6 523 281 42 3 chr6 31101775 31101978 -158177576 - MIR SINE MIR -1 261 3 837 198 132 22 chr6 31103385 31103612 -158175942 + MIR SINE MIR 11 262 0 382 217 43 11 chr6 31104405 31104497 -158175057 + MIR SINE MIR 70 164 -98 180 0 0 0 chr6 31106697 31106717 -158172837 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr6 31107695 31107716 -158171838 + AT_rich Low_complexity Low_complexity 1 21 0 2376 89 0 3 chr6 31107909 31108213 -158171341 - AluSg SINE Alu -7 303 1 769 305 77 8 chr6 31108584 31109115 -158170439 - L1M4 LINE L1 -2215 3931 3364 1886 170 3 10 chr6 31109151 31109457 -158170097 - AluJo SINE Alu -8 304 1 379 206 93 0 chr6 31109467 31109514 -158170040 - L1MA10 LINE L1 -2 6332 6286 812 217 61 64 chr6 31109514 31109809 -158169745 - L1ME1 LINE L1 -48 6118 5825 2370 85 7 0 chr6 31109810 31110103 -158169451 - AluSc SINE Alu -14 295 1 2334 113 0 0 chr6 31110658 31110968 -158168586 + AluSq SINE Alu 1 310 -3 326 297 110 32 chr6 31111132 31111287 -158168267 - L2 LINE L2 0 3313 3147 706 243 39 6 chr6 31111291 31111472 -158168082 + L1MDa LINE L1 22 208 -6332 686 161 116 20 chr6 31111564 31111763 -158167791 - L1MDa LINE L1 -5164 1376 1159 * 1494 224 64 6 chr6 31111759 31112258 -158167296 + L1M4 LINE L1 2658 3185 -2961 1510 195 44 12 chr6 31112280 31112619 -158166935 + L1MA6 LINE L1 5939 6288 -12 4828 240 74 41 chr6 31112636 31114541 -158165013 + L1M4 LINE L1 3215 5199 -957 2530 74 0 0 chr6 31114541 31114850 -158164704 + AluSc SINE Alu 1 309 0 4828 240 74 41 chr6 31114850 31115016 -158164538 + L1M4 LINE L1 5199 5358 -798 1869 137 0 58 chr6 31115470 31115783 -158163771 - AluJo SINE Alu -17 295 1 1092 136 205 110 chr6 31116137 31116349 -158163205 - MER7A DNA MER2_type -2693 345 94 1783 159 14 0 chr6 31116349 31116625 -158162929 - AluJo SINE Alu -22 290 11 1092 136 205 110 chr6 31116625 31116729 -158162825 - MER7A DNA MER2_type -2944 94 1 1123 273 94 3 chr6 31116808 31117149 -158162405 - REP3 LTR ERV -187 375 4 216 214 298 0 chr6 31117234 31117318 -158162236 + L2 LINE L2 3161 3269 -3 242 214 0 0 chr6 31117476 31117518 -158162036 - L2 LINE L2 -37 3235 3194 1214 233 120 26 chr6 31117731 31118165 -158161389 + MLT2B1 LTR ERVL 1 479 -41 257 227 35 0 chr6 31118152 31118246 -158161308 + (TA)n Simple_repeat Simple_repeat 1 97 0 * 306 112 0 8 chr6 31118246 31118297 -158161257 + MLT2C2 LTR ERVL 417 456 -8 2124 68 65 0 chr6 31119249 31119362 -158160192 + AluY SINE Alu 1 105 -206 2266 39 28 3 chr6 31119362 31119645 -158159909 + L1PA5 LINE L1 5865 6154 0 2124 68 65 0 chr6 31119645 31119810 -158159744 + AluY SINE Alu 105 297 -14 787 143 56 0 chr6 31120083 31120209 -158159345 + FLAM_C SINE Alu 1 133 0 2261 106 0 0 chr6 31120317 31120609 -158158945 + AluY SINE Alu 1 292 -19 1950 121 0 0 chr6 31122544 31122809 -158156745 + AluSx SINE Alu 40 304 -8 231 309 72 33 chr6 31122911 31123063 -158156491 + MIR3 SINE MIR 45 202 -6 1588 199 0 20 chr6 31123271 31123567 -158155987 + AluJo SINE Alu 15 304 -8 609 134 0 31 chr6 31124336 31124433 -158155121 + FRAM SINE Alu 64 157 -19 307 329 94 0 chr6 31125236 31125406 -158154148 + L2 LINE L2 3119 3304 -9 1477 150 0 13 chr6 31125438 31125665 -158153889 + AluJb SINE Alu 7 230 -82 582 133 16 62 chr6 31125671 31125799 -158153755 + AluJb SINE Alu 191 312 0 658 261 93 19 chr6 31126265 31126480 -158153074 - MIR SINE MIR -29 233 3 1565 220 92 29 chr6 31126978 31127456 -158152098 + Charlie4a DNA MER1_type 1 508 0 1107 194 20 45 chr6 31128430 31128613 -158150941 + MLT1E2 LTR MaLR 386 563 -63 2177 130 13 0 chr6 31128613 31128921 -158150633 - AluSx SINE Alu 0 312 1 1107 194 20 45 chr6 31128921 31128984 -158150570 + MLT1E2 LTR MaLR 563 626 0 564 242 155 0 chr6 31128982 31129176 -158150378 - MER2 DNA MER2_type 0 345 122 * 887 171 0 19 chr6 31129177 31129335 -158150219 + FRAM SINE Alu 1 154 -22 693 186 23 16 chr6 31129336 31129465 -158150089 - MER2 DNA MER2_type -215 130 1 480 226 266 23 chr6 31130100 31130277 -158149277 + MIR SINE MIR 15 234 -28 882 266 138 19 chr6 31130277 31130596 -158148958 + LTR18A LTR ERVL 1 357 0 1523 201 16 16 chr6 31130602 31130915 -158148639 + HERVL18 LTR ERVL 1 313 -5734 1499 193 19 4 chr6 31130889 31131158 -158148396 + HERVL18 LTR ERVL 492 764 -5283 * 499 206 0 0 chr6 31131165 31131257 -158148297 + HERVL18 LTR ERVL 871 962 -5085 * 1182 172 3 16 chr6 31131244 31131606 -158147948 + HERVL18 LTR ERVL 1390 1810 -4237 * 1493 136 23 12 chr6 31131605 31131903 -158147651 + HERVL18 LTR ERVL 2119 2477 -3570 * 5512 161 15 8 chr6 31131877 31132735 -158146819 + HERVL18 LTR ERVL 2718 3581 -2466 636 130 11 0 chr6 31132735 31132827 -158146727 + HERVL18 LTR ERVL 4394 4486 -1561 254 339 0 0 chr6 31132829 31132888 -158146666 + HERVL18 LTR ERVL 5209 5267 -780 2238 147 196 40 chr6 31133131 31133662 -158145892 + LTR18B LTR ERVL 1 614 0 205 338 198 14 chr6 31133739 31133961 -158145593 + L2 LINE L2 2133 2395 -919 2485 80 0 19 chr6 31134260 31134573 -158144981 + AluSc SINE Alu 1 307 -2 613 199 5 108 chr6 31134895 31134980 -158144574 + MER5B DNA MER1_type 5 62 -116 1502 153 18 0 chr6 31134980 31135202 -158144352 + AluSx SINE Alu 3 228 -84 613 199 5 108 chr6 31135202 31135302 -158144252 + MER5B DNA MER1_type 62 171 -7 526 221 45 111 chr6 31135305 31135754 -158143800 + L1MC5 LINE L1 7375 7793 -168 262 199 35 28 chr6 31135793 31135934 -158143620 + GA-rich Low_complexity Low_complexity 5 146 0 325 214 34 43 chr6 31135938 31136055 -158143499 + L1MC5 LINE L1 7810 7925 -36 309 275 99 8 chr6 31136358 31136489 -158143065 + L1MC4a LINE L1 6441 6583 -1225 792 224 20 5 chr6 31136910 31137106 -158142448 - MIR SINE MIR -52 210 12 315 49 0 0 chr6 31137410 31137451 -158142103 + (CA)n Simple_repeat Simple_repeat 1 41 0 306 273 67 34 chr6 31137737 31137946 -158141608 + L1MC4a LINE L1 5871 6086 -1722 333 240 6 28 chr6 31138269 31138605 -158140949 + (TA)n Simple_repeat Simple_repeat 1 328 0 1123 295 67 48 chr6 31138605 31139739 -158139815 + L1MC/D LINE L1 4532 5676 -553 358 222 65 158 chr6 31139739 31140201 -158139353 - L2 LINE L2 -17 3296 2834 385 341 66 2 chr6 31140216 31140486 -158139068 - LTR16A LTR ERVL -51 399 73 2149 112 3 29 chr6 31140795 31141107 -158138447 + AluSx SINE Alu 1 304 -8 975 292 100 85 chr6 31141133 31142269 -158137285 - ERVL LTR ERVL -550 5104 3632 1864 162 3 49 chr6 31142269 31142596 -158136958 - AluSx SINE Alu 0 312 1 975 292 100 85 chr6 31142596 31143022 -158136532 - ERVL LTR ERVL -2022 3632 3214 2558 290 70 53 chr6 31143262 31143616 -158135938 - ERVL LTR ERVL -2158 2838 2492 2300 64 61 10 chr6 31143616 31143912 -158135642 + AluY SINE Alu 1 311 0 2558 290 70 53 chr6 31143912 31144709 -158134845 - ERVL LTR ERVL -2504 2492 1667 842 312 54 9 chr6 31144734 31145051 -158134503 - ERVL LTR ERVL -3933 1063 733 699 325 50 14 chr6 31145084 31145364 -158134190 - ERVL LTR ERVL -4343 653 364 465 271 0 8 chr6 31145495 31145613 -158133941 + LTR40c LTR ERVL 3 119 -346 866 335 65 29 chr6 31145613 31145854 -158133700 - L1M3c LINE L1 -5701 440 176 1729 209 19 8 chr6 31145854 31146213 -158133341 + MLT1A1 LTR MaLR 3 365 0 866 335 65 29 chr6 31146213 31146386 -158133168 - L1M3c LINE L1 -5965 176 11 858 243 36 102 chr6 31146391 31146784 -158132770 + L1MEc LINE L1 1585 1946 -4450 2359 109 33 14 chr6 31146784 31147152 -158132402 - THE1C LTR MaLR 0 375 1 858 243 36 102 chr6 31147152 31147207 -158132347 + L1MEc LINE L1 1946 2003 -4393 304 194 0 0 chr6 31147237 31147299 -158132255 + L1MEc LINE L1 1994 2055 -4341 348 252 71 47 chr6 31147354 31147481 -158132073 + MER69 DNA AcHobo 1 130 -1096 595 249 51 55 chr6 31147501 31147718 -158131836 + MER69 DNA AcHobo 51 266 -960 1850 193 77 24 chr6 31147730 31147855 -158131699 + MER69 DNA AcHobo 1458 1575 -951 1932 121 33 0 chr6 31147855 31148128 -158131426 + AluSx SINE Alu 1 282 -30 1850 193 77 24 chr6 31148128 31148812 -158130742 + MER69 DNA AcHobo 1575 2384 -142 682 201 49 42 chr6 31148813 31148957 -158130597 + FRAM SINE Alu 1 143 -33 1618 183 56 0 chr6 31149042 31149326 -158130228 - AluSx SINE Alu -12 300 1 397 189 9 66 chr6 31149326 31149348 -158130206 + MER69 DNA AcHobo 2396 2418 -108 1494 185 61 14 chr6 31149348 31149664 -158129890 - AluJo SINE Alu 0 312 1 397 189 9 66 chr6 31149664 31149747 -158129807 + MER69 DNA AcHobo 2418 2495 -31 215 366 89 0 chr6 31149762 31149885 -158129669 + L2 LINE L2 3180 3313 0 461 335 67 0 chr6 31149929 31150108 -158129446 + L2 LINE L2 2553 2743 -571 180 0 0 0 chr6 31201832 31201852 -158077702 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr6 31202830 31202851 -158076703 + AT_rich Low_complexity Low_complexity 1 21 0 2376 89 0 3 chr6 31203044 31203348 -158076206 - AluSg SINE Alu -7 303 1 769 305 77 8 chr6 31203719 31204250 -158075304 - L1M4 LINE L1 -2215 3931 3364 1886 170 3 10 chr6 31204286 31204592 -158074962 - AluJo SINE Alu -8 304 1 379 206 93 0 chr6 31204602 31204649 -158074905 - L1MA10 LINE L1 -2 6332 6286 812 217 61 64 chr6 31204649 31204944 -158074610 - L1ME1 LINE L1 -48 6118 5825 2370 85 7 0 chr6 31204945 31205238 -158074316 - AluSc SINE Alu -14 295 1 2334 113 0 0 chr6 31205793 31206103 -158073451 + AluSq SINE Alu 1 310 -3 326 297 110 32 chr6 31206267 31206422 -158073132 - L2 LINE L2 0 3313 3147 706 243 39 6 chr6 31206426 31206607 -158072947 + L1MDa LINE L1 22 208 -6332 686 161 116 20 chr6 31206699 31206898 -158072656 - L1MDa LINE L1 -5164 1376 1159 * 1494 224 64 6 chr6 31206894 31207393 -158072161 + L1M4 LINE L1 2658 3185 -2961 1510 195 44 12 chr6 31207415 31207754 -158071800 + L1MA6 LINE L1 5939 6288 -12 4828 240 74 41 chr6 31207771 31209676 -158069878 + L1M4 LINE L1 3215 5199 -957 2530 74 0 0 chr6 31209676 31209985 -158069569 + AluSc SINE Alu 1 309 0 4828 240 74 41 chr6 31209985 31210151 -158069403 + L1M4 LINE L1 5199 5358 -798 1869 137 0 58 chr6 31210605 31210918 -158068636 - AluJo SINE Alu -17 295 1 1092 136 205 110 chr6 31211272 31211484 -158068070 - MER7A DNA MER2_type -2693 345 94 1783 159 14 0 chr6 31211484 31211760 -158067794 - AluJo SINE Alu -22 290 11 1092 136 205 110 chr6 31211760 31211864 -158067690 - MER7A DNA MER2_type -2944 94 1 1123 273 94 3 chr6 31211943 31212284 -158067270 - REP3 LTR ERV -187 375 4 216 214 298 0 chr6 31212369 31212453 -158067101 + L2 LINE L2 3161 3269 -3 242 214 0 0 chr6 31212611 31212653 -158066901 - L2 LINE L2 -37 3235 3194 1214 239 119 31 chr6 31212866 31213285 -158066269 + MLT2B1 LTR ERVL 1 456 -64 204 217 33 0 chr6 31213287 31213379 -158066175 + (TA)n Simple_repeat Simple_repeat 2 96 0 287 112 0 8 chr6 31213381 31213432 -158066122 + MLT2C1 LTR ERVL 350 389 -8 2071 68 65 0 chr6 31214384 31214497 -158065057 + AluY SINE Alu 1 105 -206 2221 39 28 3 chr6 31214497 31214780 -158064774 + L1PA5 LINE L1 5865 6154 0 2071 68 65 0 chr6 31214780 31214945 -158064609 + AluY SINE Alu 105 297 -14 787 143 56 0 chr6 31215218 31215344 -158064210 + FLAM_C SINE Alu 1 133 0 2243 106 0 0 chr6 31215452 31215744 -158063810 + AluY SINE Alu 1 292 -19 1947 121 0 0 chr6 31217679 31217944 -158061610 + AluSx SINE Alu 40 304 -8 276 309 72 33 chr6 31218046 31218198 -158061356 + MIR3 SINE MIR 45 202 -6 187 338 14 0 chr6 31218261 31218332 -158061222 - MIR SINE MIR -7 255 184 1298 203 0 25 chr6 31218406 31218643 -158060911 + AluJo SINE Alu 15 245 -67 262 289 0 0 chr6 31218643 31218726 -158060828 - MER90 LTR ERV1 -492 83 1 1998 127 7 45 chr6 31219165 31219473 -158060081 - AluSx SINE Alu -16 296 1 1956 153 0 3 chr6 31219899 31220187 -158059367 - AluSx SINE Alu -25 287 1 200 128 0 26 chr6 31220513 31220552 -158059002 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 340 157 0 0 chr6 31220815 31220866 -158058688 + Alu SINE Alu 1 51 -249 1828 126 7 14 chr6 31220866 31221143 -158058411 + AluSx SINE Alu 25 299 -13 287 203 54 0 chr6 31221143 31221217 -158058337 - L1MC/D LINE L1 -1971 5837 5760 203 227 173 40 chr6 31221223 31221298 -158058256 - MIR3 SINE MIR -34 174 90 270 0 0 0 chr6 31221974 31222004 -158057550 + (TG)n Simple_repeat Simple_repeat 2 31 0 217 277 185 8 chr6 31223227 31223346 -158056208 - L2 LINE L2 0 3272 3133 224 313 45 0 chr6 31223841 31223908 -158055646 - MIR3 SINE MIR -49 159 90 362 211 9 0 chr6 31224574 31224688 -158054866 + (TG)n Simple_repeat Simple_repeat 2 116 0 9217 58 3 150 chr6 31225575 31227196 -158052358 - SVA Other Other -2 1384 2 2122 131 6 6 chr6 31227614 31227927 -158051627 + AluSq SINE Alu 1 313 0 183 175 53 0 chr6 31228733 31228790 -158050764 + (TAA)n Simple_repeat Simple_repeat 2 61 0 896 253 97 90 chr6 31229479 31229914 -158049640 - LTR16A1 LTR ERVL 0 457 20 833 232 51 0 chr6 31230042 31230219 -158049335 + MER5A DNA MER1_type 4 189 0 375 98 0 0 chr6 31230463 31230514 -158049040 + MER31B LTR ERV1 1 51 -415 432 209 0 44 chr6 31230514 31230605 -158048949 + MER21B LTR ERV1 1 87 -776 3463 227 47 14 chr6 31230626 31231393 -158048161 + MER21B LTR ERV1 18 809 -54 1024 219 214 11 chr6 31231414 31231770 -158047784 + MER31B LTR ERV1 39 466 0 1457 158 110 0 chr6 31232084 31232367 -158047187 + AluJb SINE Alu 1 311 0 2188 108 7 3 chr6 31233196 31233493 -158046061 + AluSx SINE Alu 1 298 -14 295 325 67 0 chr6 31234531 31234651 -158044903 - L2 LINE L2 -966 2348 2221 703 304 88 40 chr6 31235104 31235943 -158043611 + L1M4 LINE L1 2261 3139 -3007 253 265 24 0 chr6 31236208 31236291 -158043263 - MIR SINE MIR 0 262 178 8428 63 8 4 chr6 31236661 31237664 -158041890 - LTR13 LTR ERVK 0 1007 1 313 246 0 0 chr6 31237819 31237884 -158041670 - tRNA-Leu-CTT tRNA tRNA -20 65 1 231 114 0 0 chr6 31238959 31238994 -158040560 + (A)n Simple_repeat Simple_repeat 1 35 0 604 81 0 0 chr6 31239644 31239718 -158039836 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 428 86 0 0 chr6 31240190 31240248 -158039306 - AluSx SINE Alu -12 297 240 1501 101 5 0 chr6 31240248 31240447 -158039107 - AluSx SINE Alu -112 200 1 484 344 37 9 chr6 31240594 31240809 -158038745 + MIR SINE MIR 38 258 -4 418 209 47 85 chr6 31240876 31241000 -158038554 + LTR8 LTR ERV1 1 119 -572 2537 110 48 0 chr6 31241000 31241355 -158038199 + MER83 LTR ERV1 1 372 -76 1531 206 26 41 chr6 31241354 31241539 -158038015 + MLT1C LTR MaLR 86 272 -195 * 4446 119 29 39 chr6 31241539 31242237 -158037317 + LTR8 LTR ERV1 1 691 0 1531 206 26 41 chr6 31242237 31242439 -158037115 + MLT1C LTR MaLR 272 467 0 3031 178 71 26 chr6 31242671 31243335 -158036219 + LTR8A LTR ERV1 34 727 0 624 226 80 49 chr6 31243377 31243603 -158035951 + LTR16A1 LTR ERVL 116 348 -109 801 207 0 7 chr6 31243671 31243816 -158035738 - AluJb SINE Alu -35 277 134 2776 17 0 0 chr6 31243853 31244154 -158035400 + AluYa5 SINE Alu 1 301 -10 247 242 16 0 chr6 31244232 31244294 -158035260 + (TA)n Simple_repeat Simple_repeat 1 63 0 2653 208 30 113 chr6 31244298 31244857 -158034697 + L1M4 LINE L1 2759 3221 -2925 241 62 0 104 chr6 31244857 31244905 -158034649 + Alu SINE Alu 271 313 -7 2653 208 30 113 chr6 31244905 31245479 -158034075 + L1M4 LINE L1 3221 3841 -2305 540 242 25 8 chr6 31245502 31245705 -158033849 + L1M4 LINE L1 4369 4574 -1572 605 164 0 0 chr6 31245758 31245862 -158033692 - AluJb SINE Alu 0 312 209 850 304 46 38 chr6 31245870 31246265 -158033289 - MER70-int LTR ERVL -1878 3145 2748 912 220 35 4 chr6 31246266 31246498 -158033056 - L1M4 LINE L1 -1428 4718 4480 551 313 0 0 chr6 31246542 31246708 -158032846 - MER70-int LTR ERVL -2412 2611 2446 557 340 39 12 chr6 31246756 31247015 -158032539 + MER70-int LTR ERVL 562 827 -4196 309 213 62 0 chr6 31247356 31247436 -158032118 - MER70-int LTR ERVL -4457 566 482 934 202 11 0 chr6 31247500 31247683 -158031871 + MLT1D LTR MaLR 321 505 0 362 222 0 0 chr6 31247912 31247984 -158031570 - tRNA-Met-e tRNA tRNA -3 72 1 489 251 8 123 chr6 31248811 31248913 -158030641 - MIR SINE MIR -2 260 199 1416 87 5 5 chr6 31248913 31249098 -158030456 - L1PB1 LINE L1 -3 6148 5964 489 251 8 123 chr6 31249098 31249230 -158030324 - MIR SINE MIR -63 199 53 731 37 0 0 chr6 31250006 31250088 -158029466 + tRNA-Leu-CTT tRNA tRNA 1 82 -3 367 322 157 36 chr6 31250497 31250860 -158028694 - L1MC4a LINE L1 -1908 5900 5494 304 345 24 43 chr6 31250874 31251083 -158028471 - MIR SINE MIR 0 262 58 1654 211 88 55 chr6 31251092 31251581 -158027973 + MLT1D LTR MaLR 1 505 0 22 56 0 0 chr6 31252458 31252494 -158027060 + AT_rich Low_complexity Low_complexity 1 36 0 349 242 161 16 chr6 31252666 31252790 -158026764 + L1M4 LINE L1 4222 4327 -1819 2286 108 0 9 chr6 31252790 31253105 -158026449 + AluSx SINE Alu 1 312 0 349 242 161 16 chr6 31253105 31253166 -158026388 + L1M4 LINE L1 4327 4434 -1712 614 95 0 0 chr6 31254085 31254159 -158025395 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 520 260 4 122 chr6 31254811 31255057 -158024497 - L2 LINE L2 -3 3310 3094 303 343 71 0 chr6 31255304 31255444 -158024110 + MIR SINE MIR 40 189 -73 1120 61 0 0 chr6 31256289 31256421 -158023133 - AluY SINE Alu -179 132 1 4170 164 8 29 chr6 31256657 31257426 -158022128 + L1MC3 LINE L1 6176 6928 -857 475 262 64 14 chr6 31257425 31257566 -158021988 - L1MEc LINE L1 -5990 406 259 * 42 0 0 0 chr6 31257605 31257647 -158021907 + AT_rich Low_complexity Low_complexity 1 42 0 2175 89 7 0 chr6 31257765 31258056 -158021498 - AluSx SINE Alu -19 293 1 4615 134 47 59 chr6 31258794 31260202 -158019352 + pTR5 LTR ERV1 743 2425 -13 198 242 136 0 chr6 31260335 31260401 -158019153 + L2 LINE L2 3208 3282 -31 571 143 209 0 chr6 31260492 31260583 -158018971 - FLAM_C SINE Alu -23 120 11 1967 133 27 7 chr6 31261262 31261556 -158017998 - AluSx SINE Alu -12 300 1 367 260 81 16 chr6 31261716 31261839 -158017715 + MIR SINE MIR 88 218 -44 186 43 0 0 chr6 31261847 31261870 -158017684 + (TTA)n Simple_repeat Simple_repeat 1 23 0 216 0 0 0 chr6 31262351 31262375 -158017179 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 207 0 0 0 chr6 31263215 31263238 -158016316 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 244 263 82 41 chr6 31263561 31263755 -158015799 - HAL1 LINE L1 0 2507 2306 1924 133 3 70 chr6 31263758 31264089 -158015465 - AluSx SINE Alu -3 309 1 227 294 0 59 chr6 31264256 31264296 -158015258 - HAL1 LINE L1 -326 2181 2140 1819 179 0 3 chr6 31264296 31264598 -158014956 - AluJb SINE Alu -11 301 1 227 294 0 59 chr6 31264598 31264659 -158014895 - HAL1 LINE L1 -367 2140 2086 495 239 158 65 chr6 31264660 31264907 -158014647 - HAL1 LINE L1 -538 1969 1700 772 242 199 26 chr6 31265367 31265554 -158014000 - HAL1 LINE L1 -805 1702 1549 270 0 0 0 chr6 31265554 31265584 -158013970 + (CA)n Simple_repeat Simple_repeat 2 31 0 772 242 199 26 chr6 31265584 31265813 -158013741 - HAL1 LINE L1 -958 1549 1214 312 70 0 0 chr6 31266106 31266149 -158013405 + (TG)n Simple_repeat Simple_repeat 2 44 0 1971 307 85 30 chr6 31266396 31267522 -158012032 - HAL1 LINE L1 -1319 1188 1 2327 85 0 0 chr6 31267556 31267850 -158011704 + AluSc SINE Alu 1 294 -15 204 324 0 14 chr6 31268043 31268114 -158011440 + L2 LINE L2 3244 3313 0 945 320 65 15 chr6 31268621 31269024 -158010530 + L2 LINE L2 2889 3311 -2 275 305 61 15 chr6 31269043 31269174 -158010380 + MER5A DNA MER1_type 7 143 -46 926 133 0 23 chr6 31269588 31269716 -158009838 + FLAM_C SINE Alu 3 127 -6 6110 154 51 7 chr6 31270500 31271607 -158007947 - L1MC1 LINE L1 0 6333 5180 212 59 29 0 chr6 31272362 31272396 -158007158 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 327 348 19 25 chr6 31273376 31273534 -158006020 + HERV16 LTR ERVL 4101 4257 -1397 849 329 54 14 chr6 31273679 31274105 -158005449 + HERV16 LTR ERVL 4557 4999 -765 360 0 0 0 chr6 31274113 31274153 -158005401 + (GAGAA)n Simple_repeat Simple_repeat 2 41 0 278 253 53 21 chr6 31274153 31274248 -158005306 + HERV16 LTR ERVL 4589 4686 -310 229 283 66 69 chr6 31274357 31274675 -158004879 + L1ME LINE L1 4903 5219 -927 480 245 14 68 chr6 31274678 31274825 -158004729 - MER69A DNA AcHobo 0 177 39 22 35 0 0 chr6 31274969 31274998 -158004556 + AT_rich Low_complexity Low_complexity 1 29 0 360 70 53 0 chr6 31275050 31275107 -158004447 + Alu SINE Alu 238 297 -3 957 315 51 31 chr6 31275417 31275963 -158003591 - LTR67 LTR ERVL 0 557 1 343 254 149 0 chr6 31276059 31276193 -158003361 + L1ME LINE L1 5665 5818 -352 2041 102 3 18 chr6 31276194 31276498 -158003056 + AluSg SINE Alu 1 300 0 22 0 0 0 chr6 31276543 31276565 -158002989 + AT_rich Low_complexity Low_complexity 1 22 0 895 191 0 24 chr6 31276687 31276855 -158002699 - AluJb SINE Alu -3 309 146 5060 130 32 1 chr6 31276855 31277734 -158001820 + L1MA4A LINE L1 5395 6300 -3 445 331 184 4 chr6 31277745 31278017 -158001537 - L2 LINE L2 -778 2536 2216 1639 65 69 48 chr6 31278234 31278465 -158001089 + AluY SINE Alu 58 293 -18 2317 111 3 0 chr6 31278632 31278938 -158000616 + AluSq SINE Alu 1 307 -6 232 302 198 17 chr6 31278977 31279093 -158000461 + MIR SINE MIR 16 152 -56 578 299 47 8 chr6 31279109 31279363 -158000191 - L1ME3A LINE L1 -11 6159 5896 203 189 0 0 chr6 31279365 31279402 -158000152 + T-rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr6 31280783 31280807 -157998747 + AT_rich Low_complexity Low_complexity 1 24 0 1090 228 135 17 chr6 31281818 31282174 -157997380 - L1ME3A LINE L1 -280 5890 5493 395 259 28 0 chr6 31282242 31282350 -157997204 + L1MC4a LINE L1 5451 5561 -2247 760 278 127 50 chr6 31282371 31283231 -157996323 + L1MC4a LINE L1 5693 6618 -1190 273 79 90 11 chr6 31283240 31283329 -157996225 + (TA)n Simple_repeat Simple_repeat 1 96 0 27 73 0 0 chr6 31283339 31283394 -157996160 + AT_rich Low_complexity Low_complexity 1 55 0 267 150 53 86 chr6 31283394 31283517 -157996037 + L1MC4a LINE L1 6595 6668 -1140 4769 130 79 14 chr6 31283517 31284293 -157995261 + LTR12 LTR ERV1 1 826 0 987 210 95 65 chr6 31284305 31284529 -157995025 + L1MC4 LINE L1 6733 6976 -1066 1208 126 239 8 chr6 31284529 31284768 -157994786 + AluSx SINE Alu 1 294 -8 987 210 95 65 chr6 31284768 31284943 -157994611 + L1MC4 LINE L1 6976 7144 -898 495 147 42 11 chr6 31284944 31285039 -157994515 + MIR SINE MIR 114 211 -51 775 188 46 130 chr6 31285774 31286035 -157993519 - MIR SINE MIR -21 241 3 479 286 64 7 chr6 31286375 31286515 -157993039 - MIR SINE MIR -30 232 85 2176 113 3 3 chr6 31286534 31286836 -157992718 + AluSq SINE Alu 1 302 -11 1016 269 83 16 chr6 31288228 31288779 -157990775 + L2 LINE L2 2577 3169 -144 993 263 16 31 chr6 31288836 31289091 -157990463 + MIR SINE MIR 12 262 0 527 229 37 0 chr6 31289100 31289209 -157990345 + L2 LINE L2 3190 3302 -11 193 194 0 0 chr6 31289209 31289245 -157990309 + L2 LINE L2 3278 3313 0 2081 102 39 7 chr6 31289324 31289608 -157989946 + AluSg SINE Alu 1 293 -17 2737 69 16 24 chr6 31289873 31290249 -157989305 + THE1C LTR MaLR 1 373 -2 2354 101 0 0 chr6 31290315 31290622 -157988932 + AluSx SINE Alu 2 308 -4 384 195 24 0 chr6 31290920 31291002 -157988552 - MER112 DNA MER1_type -175 85 2 1839 101 0 4 chr6 31291101 31291348 -157988206 - AluSx SINE Alu -3 309 64 200 266 89 65 chr6 31291644 31291768 -157987786 - MIR SINE MIR -24 238 112 771 284 13 0 chr6 31293296 31293451 -157986103 - L2 LINE L2 0 3272 3116 26 64 0 0 chr6 31294607 31294654 -157984900 + AT_rich Low_complexity Low_complexity 1 47 0 564 234 131 17 chr6 31295287 31295462 -157984092 - MIR3 SINE MIR -6 202 8 25 65 0 0 chr6 31295638 31295684 -157983870 + AT_rich Low_complexity Low_complexity 1 46 0 468 244 85 26 chr6 31295762 31296032 -157983522 - L1MC4a LINE L1 -1777 6031 5746 410 255 28 9 chr6 31297129 31297235 -157982319 + MER5A DNA MER1_type 31 138 -51 592 144 21 0 chr6 31297262 31297359 -157982195 + MER94 DNA DNA 1 99 -35 189 0 0 0 chr6 31298312 31298333 -157981221 + (TTGG)n Simple_repeat Simple_repeat 1 21 0 199 235 0 39 chr6 31299384 31299435 -157980119 - L2 LINE L2 -7 3306 3258 272 319 60 118 chr6 31299974 31300595 -157978959 - L2 LINE L2 -573 2741 2157 2139 101 21 0 chr6 31300627 31300913 -157978641 - AluSp SINE Alu -21 292 1 2144 164 0 0 chr6 31301006 31301354 -157978200 + MER7A DNA MER2_type 1 346 0 212 347 0 25 chr6 31301412 31301533 -157978021 - L2 LINE L2 -1295 2019 1902 2025 88 66 4 chr6 31301618 31301891 -157977663 + AluSq SINE Alu 1 290 -23 183 241 0 56 chr6 31301909 31301948 -157977606 + L2 LINE L2 3212 3249 -23 15471 112 24 13 chr6 31301948 31303105 -157976449 + Tigger1 DNA MER2_type 1 1143 -1275 1703 154 4 4 chr6 31303105 31303388 -157976166 + AluJb SINE Alu 23 305 0 15471 112 24 13 chr6 31303388 31304620 -157974934 + Tigger1 DNA MER2_type 1143 2418 0 183 241 0 56 chr6 31304620 31304634 -157974920 + L2 LINE L2 3249 3262 -10 2806 231 43 69 chr6 31306495 31307930 -157971624 - L1MC5 LINE L1 -49 7912 6503 1569 213 13 16 chr6 31309560 31309870 -157969684 - AluJo SINE Alu -3 309 1 24 53 0 0 chr6 31310057 31310095 -157969459 + AT_rich Low_complexity Low_complexity 1 38 0 930 205 0 0 chr6 31310328 31310494 -157969060 + FRAM SINE Alu 1 164 -12 2321 75 0 0 chr6 31310496 31310801 -157968753 + AluY SINE Alu 1 305 0 801 81 0 0 chr6 31310802 31310913 -157968641 + L1MA1 LINE L1 6192 6302 0 669 182 9 0 chr6 31310970 31311080 -157968474 - FLAM_C SINE Alu -32 111 1 208 237 0 0 chr6 31311318 31311356 -157968198 - MIR SINE MIR -218 44 7 292 214 67 45 chr6 31311388 31311477 -157968077 - MIR SINE MIR -56 206 116 2527 33 10 3 chr6 31311641 31311940 -157967614 + AluY SINE Alu 1 301 -10 300 214 183 1 chr6 31312271 31312365 -157967189 + MER5A DNA MER1_type 62 189 0 261 313 184 6 chr6 31312625 31312788 -157966766 - MIR SINE MIR -50 212 21 900 274 35 52 chr6 31313527 31313852 -157965702 + L1ME LINE L1 205 524 -5546 2107 77 48 0 chr6 31313852 31314147 -157965407 + AluSq SINE Alu 1 308 0 900 274 35 52 chr6 31314147 31314221 -157965333 + L1ME LINE L1 524 598 -5472 350 284 114 34 chr6 31314446 31314622 -157964932 - L2 LINE L2 -92 3221 3032 1737 203 16 0 chr6 31314950 31315256 -157964298 + AluJb SINE Alu 2 312 0 189 340 117 25 chr6 31315290 31315452 -157964102 - MIR3 SINE MIR -29 179 3 1953 111 76 3 chr6 31315518 31315807 -157963747 - AluSg SINE Alu 0 310 1 1604 178 101 21 chr6 31315920 31316258 -157963296 + MLT1A1 LTR MaLR 1 365 0 1868 173 0 29 chr6 31316267 31316580 -157962974 - AluJo SINE Alu -8 304 1 201 175 0 0 chr6 31316594 31316634 -157962920 + CT-rich Low_complexity Low_complexity 2 41 0 3270 152 44 93 chr6 31316669 31317314 -157962240 + L1P4 LINE L1 4379 5054 -1112 853 88 0 0 chr6 31317314 31317428 -157962126 + AluY SINE Alu 191 304 -7 3270 152 44 93 chr6 31317428 31318173 -157961381 + L1P4 LINE L1 5054 5792 -374 1150 131 0 12 chr6 31318176 31318344 -157961210 - AluJo SINE Alu -146 166 1 291 29 0 0 chr6 31318406 31318441 -157961113 - U2 snRNA snRNA -153 35 1 214 297 0 0 chr6 31318446 31318520 -157961034 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 210 259 37 0 chr6 31320821 31320875 -157958679 - MIR SINE MIR -67 141 86 1656 201 60 52 chr6 31320890 31321337 -157958217 + MER74C LTR ERVL 10 460 0 181 286 33 77 chr6 31321337 31321428 -157958126 - MIR SINE MIR -173 89 3 822 229 0 7 chr6 31321948 31322101 -157957453 - FRAM SINE Alu -17 159 8 348 292 64 77 chr6 31322250 31322483 -157957071 - HAL1 LINE L1 -33 2474 2245 2236 99 0 0 chr6 31323069 31323381 -157956173 - AluSx SINE Alu 0 312 1 7649 50 5 0 chr6 31323627 31324899 -157954655 + L1PA6 LINE L1 4876 6151 -3 1046 248 58 62 chr6 31325174 31325768 -157953786 - MLT1H1 LTR MaLR -7 583 1 318 352 93 43 chr6 31326679 31327054 -157952500 + L2 LINE L2 2122 2515 -799 1320 281 115 25 chr6 31327136 31328499 -157951055 - L1MC/D LINE L1 -743 5403 4203 273 316 31 10 chr6 31329401 31329499 -157950055 - MIR3 SINE MIR -6 202 103 2538 26 0 51 chr6 31329763 31330075 -157949479 - AluY SINE Alu -15 296 1 877 179 0 148 chr6 31331425 31331682 -157947872 + MER20 DNA MER1_type 1 219 0 2063 145 3 0 chr6 31331807 31332118 -157947436 + AluSx SINE Alu 1 312 0 439 336 14 0 chr6 31332338 31332478 -157947076 - L2 LINE L2 -8 3305 3164 1409 127 38 5 chr6 31332479 31332691 -157946863 + AluJo SINE Alu 82 300 -12 378 304 44 39 chr6 31332703 31332907 -157946647 - L2 LINE L2 -158 3155 2951 2319 241 14 74 chr6 31332933 31333476 -157946078 - L2 LINE L2 -454 2860 2375 2289 107 0 0 chr6 31333476 31333774 -157945780 + AluSx SINE Alu 1 298 -14 2319 241 14 74 chr6 31333774 31334002 -157945552 - L2 LINE L2 -939 2375 2135 266 237 86 21 chr6 31334431 31334524 -157945030 - MIR SINE MIR -147 115 17 1509 171 27 8 chr6 31334956 31335214 -157944340 - AluJo SINE Alu -11 301 39 288 328 11 23 chr6 31335220 31335394 -157944160 + CT-rich Low_complexity Low_complexity 2 173 0 269 305 21 21 chr6 31335488 31335583 -157943971 - L2 LINE L2 -221 3051 2957 442 181 16 94 chr6 31336160 31336235 -157943319 + L1MC4 LINE L1 7860 7923 -119 2471 79 7 0 chr6 31336235 31336540 -157943014 + AluSg SINE Alu 1 307 -3 442 181 16 94 chr6 31336540 31336591 -157942963 + L1MC4 LINE L1 7923 7976 -66 243 336 86 52 chr6 31338362 31338478 -157941076 - L2 LINE L2 -14 3258 3139 199 378 54 0 chr6 31338927 31339038 -157940516 - MIR SINE MIR -62 146 30 411 293 81 7 chr6 31339051 31339216 -157940338 - MER5A DNA MER1_type -1 188 1 1449 229 36 22 chr6 31340668 31341031 -157938523 - MER87 LTR ERV1 0 541 174 2185 118 3 7 chr6 31341586 31341890 -157937664 + AluSc SINE Alu 1 303 -6 523 276 42 3 chr6 31342953 31343156 -157936398 - MIR SINE MIR -1 261 3 830 198 132 22 chr6 31344563 31344790 -157934764 + MIR SINE MIR 11 262 0 380 217 43 11 chr6 31345583 31345675 -157933879 + MIR SINE MIR 70 164 -98 2287 229 11 13 chr6 31347320 31347792 -157931762 + MER90 LTR ERV1 126 596 -18 887 165 203 5 chr6 31348663 31348871 -157930683 + LTR1 LTR ERV1 7 253 -532 4005 99 230 111 chr6 31348908 31350291 -157929263 + pTR5 LTR ERV1 743 2438 0 2610 113 56 30 chr6 31350341 31350767 -157928787 + LTR1 LTR ERV1 348 784 -1 669 214 69 0 chr6 31351862 31352007 -157927547 + MER5A DNA MER1_type 35 189 0 648 267 27 11 chr6 31353495 31353682 -157925872 + MIR SINE MIR 49 238 -24 235 287 104 26 chr6 31353704 31353819 -157925735 - MIR SINE MIR -67 141 18 395 303 20 20 chr6 31354976 31355128 -157924426 - L3 LINE CR1 -802 775 624 1652 185 0 3 chr6 31355512 31355799 -157923755 - AluJb SINE Alu -26 286 1 327 25 0 0 chr6 31356148 31356188 -157923366 + (CA)n Simple_repeat Simple_repeat 1 40 0 180 111 0 0 chr6 31356475 31356502 -157923052 + (T)n Simple_repeat Simple_repeat 1 27 0 310 304 204 30 chr6 31356571 31356772 -157922782 + MIR SINE MIR 20 255 -7 326 214 40 56 chr6 31356932 31357058 -157922496 - L1MC5 LINE L1 -36 7925 7802 264 348 27 9 chr6 31357618 31357730 -157921824 - MIR3 SINE MIR -13 195 82 186 271 43 71 chr6 31358347 31358487 -157921067 + MIR SINE MIR 71 206 -56 235 298 0 0 chr6 31358853 31358936 -157920618 + MIR SINE MIR 30 111 -151 2333 101 0 3 chr6 31359177 31359475 -157920079 + AluSq SINE Alu 1 297 -16 338 223 106 0 chr6 31360391 31360485 -157919069 - MIR SINE MIR -80 182 79 21 0 0 0 chr6 31361221 31361242 -157918312 + AT_rich Low_complexity Low_complexity 1 21 0 3679 65 9 0 chr6 31361902 31362349 -157917205 + L1PA13 LINE L1 5710 6160 -3 246 282 87 34 chr6 31362396 31362626 -157916928 - L1ME LINE L1 -500 5621 5387 201 304 13 63 chr6 31363861 31363940 -157915614 + MIR SINE MIR 30 104 -104 214 157 206 69 chr6 31364065 31364167 -157915387 + MIR SINE MIR 86 201 -61 180 77 0 0 chr6 31364756 31364782 -157914772 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 449 261 117 50 chr6 31365514 31365694 -157913860 - MIR3 SINE MIR -6 202 11 3043 77 25 5 chr6 31366018 31366034 -157913520 - L1MA2 LINE L1 -15 6289 6275 768 52 0 0 chr6 31366034 31366131 -157913423 + (TA)n Simple_repeat Simple_repeat 1 97 0 3043 77 25 5 chr6 31366131 31366515 -157913039 - L1MA2 LINE L1 -29 6275 5881 23 0 0 0 chr6 31366926 31366949 -157912605 + AT_rich Low_complexity Low_complexity 1 23 0 1005 235 17 52 chr6 31366994 31367224 -157912330 + MER58A DNA MER1_type 1 222 -2 1698 94 0 9 chr6 31368425 31368676 -157910878 + AluSg/x SINE Alu 89 337 0 372 248 60 54 chr6 31368676 31368825 -157910729 + MER5B DNA MER1_type 29 178 0 319 274 59 10 chr6 31368853 31368955 -157910599 + MIR SINE MIR 39 145 -63 247 386 71 0 chr6 31369941 31370068 -157909486 - L2 LINE L2 0 3272 3137 1894 152 3 23 chr6 31370083 31370392 -157909162 + AluJo SINE Alu 1 303 -9 454 141 0 13 chr6 31370582 31370660 -157908894 + AluJ/FRAM SINE Alu 227 303 -9 946 291 67 35 chr6 31372329 31372700 -157906854 + LTR16A LTR ERVL 66 448 -2 1004 333 62 21 chr6 31372703 31373174 -157906380 + HERV16 LTR ERVL 2 491 -4505 1082 203 13 22 chr6 31373180 31373412 -157906142 + AluJo SINE Alu 8 237 -75 874 283 61 19 chr6 31373610 31373971 -157905583 + HERV16 LTR ERVL 913 1288 -3708 22 0 0 0 chr6 31374001 31374023 -157905531 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 31374110 31374132 -157905422 + AT_rich Low_complexity Low_complexity 1 22 0 246 163 10 9 chr6 31375198 31375401 -157904153 + AluJb SINE Alu 1 293 -9 1938 153 0 16 chr6 31376108 31376416 -157903138 - AluSx SINE Alu -9 303 1 1044 256 41 93 chr6 31376416 31376931 -157902623 + MLT1H LTR MaLR 62 549 0 21 0 0 0 chr6 31377371 31377392 -157902162 + AT_rich Low_complexity Low_complexity 1 21 0 1068 266 102 16 chr6 31377702 31378328 -157901226 + HAL1 LINE L1 1533 2242 -265 348 163 113 12 chr6 31378363 31378443 -157901111 + L1M4b LINE L1 31 118 -6741 1444 124 5 0 chr6 31378446 31378648 -157900906 + AluSg SINE Alu 2 204 -106 420 256 70 74 chr6 31378648 31378948 -157900606 + L1ME2 LINE L1 5858 6155 -9 1678 119 0 20 chr6 31379069 31379321 -157900233 - AluSc SINE Alu -5 304 58 307 331 39 13 chr6 31379335 31379489 -157900065 - L1M4 LINE L1 -2619 3527 3370 651 14 0 0 chr6 31380365 31380437 -157899117 - tRNA-Arg-CGA tRNA tRNA -4 72 1 221 297 130 29 chr6 31380527 31380665 -157898889 - MIR SINE MIR -94 168 17 322 148 0 33 chr6 31381732 31381793 -157897761 + FLAM_A SINE Alu 1 54 -77 239 200 0 33 chr6 31381793 31381853 -157897701 + G-rich Low_complexity Low_complexity 3 60 0 367 124 41 113 chr6 31381860 31381957 -157897597 + FLAM_A SINE Alu 39 128 -5 638 317 99 16 chr6 31381994 31382669 -157896885 + L1M4 LINE L1 3347 4077 -2069 32 26 0 0 chr6 31382806 31382845 -157896709 + AT_rich Low_complexity Low_complexity 1 39 0 279 266 18 18 chr6 31383211 31383320 -157896234 - L1ME3A LINE L1 -5 6165 6057 1194 245 34 41 chr6 31383392 31383808 -157895746 - L1ME3A LINE L1 -112 6058 5646 307 255 49 20 chr6 31383811 31383913 -157895641 + LTR52 LTR ERVL 4 108 -313 1556 129 129 6 chr6 31383913 31384246 -157895308 - L1 LINE L1 -1556 4654 4281 * 6182 112 9 25 chr6 31384245 31385454 -157894100 + L1PB1 LINE L1 4975 6151 0 4397 166 33 1 chr6 31385459 31386333 -157893221 - L1 LINE L1 -1919 4291 3390 2021 200 32 36 chr6 31386344 31386838 -157892716 - MER21B LTR ERV1 -3 860 394 2844 229 70 18 chr6 31386876 31387776 -157891778 + MSTD-int LTR MaLR 740 1735 0 1884 196 12 53 chr6 31387776 31388189 -157891365 + MSTD LTR MaLR 1 396 0 1624 253 11 2 chr6 31388190 31388653 -157890901 - L1 LINE L1 -4716 1425 959 1492 220 13 5 chr6 31388668 31389064 -157890490 + L1MC3 LINE L1 2673 3071 -3075 301 180 0 0 chr6 31389062 31389123 -157890431 - L1M4 LINE L1 -1390 4756 4696 * 23 0 0 0 chr6 31389168 31389191 -157890363 + AT_rich Low_complexity Low_complexity 1 23 0 192 40 0 0 chr6 31389301 31389326 -157890228 + (CA)n Simple_repeat Simple_repeat 2 26 0 192 357 0 0 chr6 31389393 31389463 -157890091 + MIR3 SINE MIR 120 189 -19 876 181 38 5 chr6 31390020 31390230 -157889324 + L1MC3 LINE L1 4684 4900 -1246 1616 176 17 59 chr6 31390235 31390644 -157888910 + L1MC3 LINE L1 5639 6030 -1755 441 298 6 17 chr6 31390730 31390911 -157888643 + GA-rich Low_complexity Low_complexity 2 180 0 416 221 84 26 chr6 31390942 31391096 -157888458 + LTR41 LTR ERVL 1 163 -610 2739 162 106 4 chr6 31391178 31391726 -157887828 + LTR31 LTR ERV1 1 604 -15 456 205 168 31 chr6 31391966 31392129 -157887425 + LTR41 LTR ERVL 587 792 -3 300 211 0 21 chr6 31392838 31392933 -157886621 + L1MA4 LINE L1 6204 6296 -4 1239 159 155 65 chr6 31393023 31393153 -157886401 - AluJb SINE Alu 0 302 185 2122 113 0 7 chr6 31393153 31393444 -157886110 - AluSx SINE Alu 0 312 24 1239 159 155 65 chr6 31393444 31393590 -157885964 - AluJb SINE Alu -117 185 1 273 172 126 0 chr6 31393811 31393898 -157885656 - L1MC4a LINE L1 -1851 5957 5860 1217 260 42 82 chr6 31393898 31394425 -157885129 - L2 LINE L2 -4 3309 2804 2081 115 0 7 chr6 31394683 31394970 -157884584 + AluSg SINE Alu 1 285 -25 2231 67 0 76 chr6 31394981 31395309 -157884245 + AluY SINE Alu 3 305 -6 22 35 0 0 chr6 31395311 31395340 -157884214 + AT_rich Low_complexity Low_complexity 1 29 0 342 296 197 7 chr6 31396065 31396217 -157883337 + MER5A DNA MER1_type 9 189 0 710 168 156 42 chr6 31396225 31396249 -157883305 - MER5A DNA MER1_type 0 189 169 1860 188 37 0 chr6 31396249 31396601 -157882953 + MLT1A1 LTR MaLR 1 365 0 710 168 156 42 chr6 31396601 31396743 -157882811 - MER5A DNA MER1_type -20 169 4 215 195 0 0 chr6 31397629 31397670 -157881884 + L2 LINE L2 3272 3312 -1 273 321 44 44 chr6 31397677 31397814 -157881740 + L2 LINE L2 1784 1920 -1394 270 234 78 0 chr6 31397822 31397899 -157881655 - MLT1K LTR MaLR 0 588 506 2278 89 0 46 chr6 31398779 31399103 -157880451 - AluSg1 SINE Alu 0 309 1 21 57 0 0 chr6 31399658 31399693 -157879861 + AT_rich Low_complexity Low_complexity 1 35 0 2004 135 30 3 chr6 31399990 31400286 -157879268 - AluSc SINE Alu -5 304 1 257 299 64 67 chr6 31400930 31401274 -157878280 + MLT1L LTR MaLR 129 471 -144 301 264 203 28 chr6 31401356 31401538 -157878016 - HAL1 LINE L1 -1191 1316 1103 24 32 0 0 chr6 31401556 31401587 -157877967 + AT_rich Low_complexity Low_complexity 1 31 0 329 248 55 37 chr6 31401835 31401944 -157877610 - L1ME3A LINE L1 -241 5929 5819 329 207 60 66 chr6 31401944 31402097 -157877457 - L1ME3 LINE L1 -2 6332 6019 666 279 142 38 chr6 31402103 31402500 -157877054 - L1ME3 LINE L1 -346 5824 5470 1763 118 118 0 chr6 31402500 31402763 -157876791 - AluSx SINE Alu -18 294 1 666 279 142 38 chr6 31402763 31403385 -157876169 - L1ME3 LINE L1 -700 5470 4690 1929 199 7 17 chr6 31403523 31403936 -157875618 + LTR2 LTR ERV1 41 449 0 34 24 0 0 chr6 31403936 31403977 -157875577 + AT_rich Low_complexity Low_complexity 1 41 0 861 207 0 0 chr6 31403984 31404129 -157875425 - FRAM SINE Alu -31 145 1 1702 196 68 27 chr6 31404196 31404635 -157874919 - LTR2B LTR ERV1 0 490 34 2320 108 3 0 chr6 31405155 31405461 -157874093 + AluSg SINE Alu 1 307 -3 2057 138 0 0 chr6 31408282 31408573 -157870981 + AluSx SINE Alu 1 291 -21 202 151 164 0 chr6 31408851 31408924 -157870630 - MER5C DNA MER1_type -112 212 128 226 317 40 40 chr6 31409251 31409575 -157869979 - Charlie3 DNA MER1_type -320 2390 2107 489 356 18 22 chr6 31409741 31410595 -157868959 - Charlie1 DNA MER1_type -812 1949 1102 34 42 0 0 chr6 31411166 31411214 -157868340 + AT_rich Low_complexity Low_complexity 1 48 0 455 237 79 0 chr6 31411427 31411541 -157868013 - MER5C DNA MER1_type -200 124 2 2083 149 0 13 chr6 31413513 31413814 -157865740 - AluSx SINE Alu -15 297 1 1128 68 0 0 chr6 31414028 31414160 -157865394 - AluYb8 SINE Alu -186 132 1 4475 144 52 11 chr6 31414633 31415385 -157864169 + LTR39 LTR ERV1 1 783 0 974 83 0 0 chr6 31417015 31417136 -157862418 + AluSq/x SINE Alu 1 121 -191 1956 118 40 40 chr6 31417411 31417708 -157861846 + AluSx SINE Alu 2 298 -14 1904 170 0 3 chr6 31418305 31418605 -157860949 + AluJb SINE Alu 1 299 -13 342 286 71 92 chr6 31418688 31419171 -157860383 - MLT1L LTR MaLR -35 580 3 1460 115 50 0 chr6 31419399 31419617 -157859937 - MER30 DNA MER1_type 0 230 2 2292 91 0 7 chr6 31419890 31420199 -157859355 + AluSc SINE Alu 1 307 -2 2069 73 37 0 chr6 31420361 31420655 -157858899 + AluY SINE Alu 1 304 0 242 272 0 11 chr6 31421419 31421524 -157858030 - Tigger1 DNA MER2_type -942 1476 1291 261 291 37 30 chr6 31421922 31422056 -157857498 - Tigger7 DNA MER2_type -1550 937 803 430 254 77 41 chr6 31423075 31423244 -157856310 - MIR SINE MIR -45 217 43 210 295 123 41 chr6 31424965 31425108 -157854446 - MIR SINE MIR -21 187 32 403 307 85 11 chr6 31426101 31426290 -157853264 + MER69 DNA AcHobo 1 203 -2323 383 160 100 60 chr6 31426296 31426396 -157853158 + MER69 DNA AcHobo 2421 2524 -2 671 28 0 0 chr6 31426629 31426701 -157852853 + tRNA-Gln-CAA tRNA tRNA 1 72 -3 225 119 0 0 chr6 31427082 31427124 -157852430 + (T)n Simple_repeat Simple_repeat 1 42 0 781 206 71 139 chr6 31428639 31429028 -157850526 + MER31B LTR ERV1 3 466 0 6274 152 34 45 chr6 31429204 31430644 -157848910 + L1MA6 LINE L1 3840 5295 -1005 2360 78 0 3 chr6 31430644 31430940 -157848614 + AluSx SINE Alu 2 296 -16 1658 153 3 55 chr6 31430941 31431267 -157848287 - AluJo SINE Alu 0 312 4 6274 152 34 45 chr6 31431267 31431623 -157847931 + L1MA6 LINE L1 5295 5654 -646 2027 137 17 0 chr6 31431623 31431915 -157847639 + AluSq SINE Alu 1 297 -16 6274 152 34 45 chr6 31431915 31432252 -157847302 + L1MA6 LINE L1 5654 6113 -187 1166 206 118 7 chr6 31432329 31432645 -157846909 + AluJb SINE Alu 1 346 0 2299 101 3 0 chr6 31432691 31432999 -157846555 + AluSq SINE Alu 1 309 -4 223 313 6 106 chr6 31433058 31433218 -157846336 - MER5A DNA MER1_type -24 165 22 981 270 112 53 chr6 31433218 31433873 -157845681 + L1MC4a LINE L1 5501 6193 -1615 784 0 0 0 chr6 31434590 31434672 -157844882 - tRNA-Ser-AGC tRNA tRNA -3 82 1 223 261 120 11 chr6 31435386 31435478 -157844076 + MIR SINE MIR 35 136 -126 1733 134 47 0 chr6 31435859 31435934 -157843620 + AluSx SINE Alu 47 117 -195 405 0 0 0 chr6 31435934 31435979 -157843575 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 1733 134 47 0 chr6 31435979 31436157 -157843397 + AluSx SINE Alu 117 312 0 2819 214 51 53 chr6 31436158 31436685 -157842869 + L1MC/D LINE L1 4275 4801 -1543 2258 138 76 9 chr6 31436685 31437026 -157842528 + THE1B LTR MaLR 1 364 0 2819 214 51 53 chr6 31437026 31437601 -157841953 + L1MC/D LINE L1 4801 5436 -908 1815 157 20 10 chr6 31437605 31437898 -157841656 + AluSx SINE Alu 5 300 -12 405 238 27 27 chr6 31437899 31438084 -157841470 + L1MC5 LINE L1 7506 7690 -271 321 26 0 0 chr6 31438112 31438150 -157841404 - MER4D LTR ERV1 -74 798 761 2454 56 0 13 chr6 31438150 31438455 -157841099 - AluY SINE Alu -10 301 1 614 229 65 19 chr6 31438465 31438679 -157840875 + L1MC5 LINE L1 7689 7912 -49 1657 166 18 22 chr6 31438790 31439067 -157840487 - AluSg SINE Alu -32 278 3 37 0 0 0 chr6 31439366 31439403 -157840151 + AT_rich Low_complexity Low_complexity 1 37 0 2061 129 7 0 chr6 31439463 31439758 -157839796 - AluSx SINE Alu -15 297 1 2452 47 23 10 chr6 31440207 31440508 -157839046 - AluY SINE Alu -6 305 1 28 0 0 0 chr6 31440508 31440536 -157839018 + AT_rich Low_complexity Low_complexity 1 28 0 240 278 52 0 chr6 31440538 31440635 -157838919 - L1M2 LINE L1 -4326 2523 2422 319 277 78 41 chr6 31440660 31440902 -157838652 - L1MDa LINE L1 -4749 1380 1130 313 220 0 0 chr6 31440978 31441037 -157838517 - MLT1E1 LTR MaLR -3 651 593 822 253 100 29 chr6 31441142 31441453 -157838101 - MLT1H LTR MaLR -226 369 1 443 329 69 32 chr6 31441459 31441585 -157837969 - L1MDa LINE L1 -5046 1073 953 2283 104 3 0 chr6 31441585 31441884 -157837670 + AluSx SINE Alu 1 300 -12 443 329 69 32 chr6 31441884 31442250 -157837304 - L1MDa LINE L1 -5166 953 563 260 315 87 0 chr6 31442692 31442784 -157836770 + L1MC4 LINE L1 7436 7535 -507 37069 126 12 13 chr6 31442813 31445873 -157833681 - HERVK LTR ERVK -597 6820 3883 5262 144 36 42 chr6 31445873 31446848 -157832706 - LTR5 LTR ERVK 0 969 1 37069 126 12 13 chr6 31446848 31449998 -157829556 - HERVK LTR ERVK -3534 3883 733 5126 119 17 4 chr6 31450071 31450818 -157828736 - HERVK LTR ERVK -6486 757 1 3588 143 48 98 chr6 31450820 31451639 -157827915 - LTR5 LTR ERVK -2 967 190 22 0 0 0 chr6 31452552 31452574 -157826980 + AT_rich Low_complexity Low_complexity 1 22 0 195 69 0 0 chr6 31452918 31452947 -157826607 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1932 138 18 0 chr6 31452949 31453225 -157826329 - AluSx SINE Alu -31 281 1 255 228 51 0 chr6 31454198 31454277 -157825277 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 21 36 0 0 chr6 31454406 31454434 -157825120 + AT_rich Low_complexity Low_complexity 1 28 0 6086 120 32 57 chr6 31454575 31455652 -157823902 + L1MA3 LINE L1 5255 6305 0 262 111 0 0 chr6 31455893 31455929 -157823625 - MLT1F LTR MaLR 0 542 507 350 250 42 10 chr6 31456028 31456098 -157823456 + L1MC5 LINE L1 7810 7885 -76 2001 131 7 0 chr6 31456098 31456396 -157823158 - AluSx SINE Alu -12 300 1 350 250 42 10 chr6 31456396 31456421 -157823133 + L1MC5 LINE L1 7885 7908 -53 1189 217 53 38 chr6 31456470 31456811 -157822743 + L1M4 LINE L1 3436 3781 -2365 337 129 75 54 chr6 31456818 31456911 -157822643 + L1MC1 LINE L1 6239 6333 0 1347 184 76 17 chr6 31457128 31457291 -157822263 - AluJb SINE Alu -7 305 153 438 20 0 0 chr6 31457291 31457342 -157822212 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1347 184 76 17 chr6 31457342 31457466 -157822088 - AluJb SINE Alu -159 153 1 2467 50 3 31 chr6 31457735 31458052 -157821502 - AluY SINE Alu -3 308 1 207 0 0 0 chr6 31458203 31458226 -157821328 + (T)n Simple_repeat Simple_repeat 1 23 0 6497 144 19 29 chr6 31458230 31459465 -157820089 - L1MC1 LINE L1 -12 6321 5101 683 0 0 0 chr6 31460322 31460394 -157819160 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 814 143 0 0 chr6 31461093 31461219 -157818335 + AluSg/x SINE Alu 141 266 -44 721 128 0 10 chr6 31461577 31461679 -157817875 + AluSq SINE Alu 129 229 -84 1969 113 27 14 chr6 31462437 31462729 -157816825 - AluSc SINE Alu -11 298 3 1742 171 26 19 chr6 31462761 31463071 -157816483 + AluJb SINE Alu 1 312 0 869 181 0 0 chr6 31463080 31463207 -157816347 + FLAM_C SINE Alu 1 127 -6 2118 98 10 16 chr6 31463276 31463581 -157815973 + AluSp SINE Alu 1 303 -10 419 358 7 7 chr6 31463657 31463805 -157815749 + L2 LINE L2 678 825 -2489 630 311 44 20 chr6 31463868 31464119 -157815435 + MIR SINE MIR 2 258 -4 2554 72 3 0 chr6 31464132 31464438 -157815116 + AluSp SINE Alu 1 307 -6 2192 113 3 3 chr6 31464438 31464749 -157814805 + AluSq SINE Alu 1 311 -2 2337 170 60 32 chr6 31464902 31465366 -157814188 - MLT1D LTR MaLR -28 477 1 273 309 24 0 chr6 31465989 31466073 -157813481 - MIR3 SINE MIR -27 181 96 220 315 145 21 chr6 31466079 31466314 -157813240 + L2 LINE L2 1246 1509 -1805 312 226 0 118 chr6 31466398 31466434 -157813120 - MER5A DNA MER1_type -88 101 62 2200 123 3 0 chr6 31466434 31466742 -157812812 - AluSg SINE Alu -1 309 1 312 226 0 118 chr6 31466742 31466807 -157812747 - MER5A DNA MER1_type -127 62 12 549 358 118 16 chr6 31466858 31467553 -157812001 + L2 LINE L2 1567 2332 -982 2269 85 16 0 chr6 31467776 31468082 -157811472 + AluY SINE Alu 1 311 0 485 273 13 33 chr6 31468157 31468307 -157811247 - L2 LINE L2 -876 2438 2292 1147 207 76 32 chr6 31468368 31468562 -157810992 - MER101B LTR ERV1 -144 416 232 1978 65 0 4 chr6 31468562 31468810 -157810744 - AluY SINE Alu -3 308 62 1147 207 76 32 chr6 31468810 31468994 -157810560 - MER101B LTR ERV1 -328 232 26 482 242 32 8 chr6 31469142 31469266 -157810288 - L2 LINE L2 -3 3310 3184 386 279 54 54 chr6 31469235 31469382 -157810172 + L2 LINE L2 2563 2709 -605 * 1727 86 86 19 chr6 31469389 31469523 -157810031 + AluSx SINE Alu 2 126 -186 2288 95 16 3 chr6 31469523 31469827 -157809727 + AluSq SINE Alu 1 308 -5 1727 86 86 19 chr6 31469827 31469959 -157809595 + AluSx SINE Alu 126 286 -26 27 29 0 0 chr6 31469959 31469993 -157809561 + AT_rich Low_complexity Low_complexity 1 34 0 454 286 112 6 chr6 31470024 31470185 -157809369 - MLT1L LTR MaLR -4 611 434 2303 108 3 0 chr6 31470532 31470838 -157808716 - AluSx SINE Alu -5 307 1 607 189 213 37 chr6 31470851 31471015 -157808539 + MER41D LTR ERV1 365 557 0 309 347 28 34 chr6 31471115 31471291 -157808263 - MLT1L LTR MaLR -285 330 156 824 282 82 68 chr6 31471318 31471565 -157807989 + MER20B DNA MER1_type 44 286 -497 2342 76 0 13 chr6 31471565 31471866 -157807688 - AluSx SINE Alu -15 297 1 824 282 82 68 chr6 31471866 31471969 -157807585 + MER20B DNA MER1_type 286 386 -397 1959 95 77 0 chr6 31471969 31472242 -157807312 + AluSg SINE Alu 2 295 -15 824 282 82 68 chr6 31472242 31472401 -157807153 + MER20B DNA MER1_type 386 561 -222 529 270 0 45 chr6 31472445 31472667 -157806887 + MER20B DNA MER1_type 569 780 -3 959 147 76 76 chr6 31473566 31473700 -157805854 - MLT2D LTR ERVL -151 263 127 1741 147 47 0 chr6 31473700 31473979 -157805575 - AluSx SINE Alu -20 292 1 959 147 76 76 chr6 31473979 31474055 -157805499 - MLT2D LTR ERVL -286 128 53 358 185 0 0 chr6 31474090 31474155 -157805399 - MLT2D LTR ERVL -399 65 1 688 249 76 10 chr6 31474156 31474353 -157805201 - L1MEc LINE L1 -6143 253 44 482 161 117 0 chr6 31474736 31474838 -157804716 - MLT1A2 LTR MaLR -2 372 274 22 35 0 0 chr6 31475832 31475861 -157803693 + AT_rich Low_complexity Low_complexity 1 29 0 622 56 0 0 chr6 31475921 31475993 -157803561 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 1739 92 0 0 chr6 31476149 31476376 -157803178 + AluSq SINE Alu 85 311 -2 21 36 0 0 chr6 31478261 31478289 -157801265 + AT_rich Low_complexity Low_complexity 1 28 0 2421 64 10 0 chr6 31479247 31479542 -157800012 - AluY SINE Alu -13 298 1 7677 120 29 35 chr6 31479561 31479833 -157799721 - Tigger3b DNA MER2_type -1797 1231 959 1485 164 12 0 chr6 31479833 31480083 -157799471 + AluJb SINE Alu 1 253 -59 7677 120 29 35 chr6 31480083 31480382 -157799172 - Tigger3b DNA MER2_type -2069 959 660 2242 103 0 31 chr6 31480382 31480701 -157798853 + AluSx SINE Alu 1 309 -3 7677 120 29 35 chr6 31480701 31481366 -157798188 - Tigger3b DNA MER2_type -2368 660 1 2568 154 22 46 chr6 31482677 31482971 -157796583 - MLT1C LTR MaLR 0 467 186 2285 78 3 10 chr6 31482971 31483264 -157796290 - AluSq SINE Alu -20 293 3 2568 154 22 46 chr6 31483264 31483429 -157796125 - MLT1C LTR MaLR -281 186 19 1090 134 32 0 chr6 31483710 31483867 -157795687 + THE1C LTR MaLR 1 162 -213 2474 85 0 0 chr6 31483869 31484174 -157795380 - AluSx SINE Alu -7 305 1 228 354 0 0 chr6 31484448 31484530 -157795024 + L2 LINE L2 3221 3302 -11 635 54 0 0 chr6 31485949 31486023 -157793531 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 275 237 169 34 chr6 31486384 31486561 -157792993 - MIR SINE MIR -13 249 49 21 0 0 0 chr6 31486613 31486634 -157792920 + AT_rich Low_complexity Low_complexity 1 21 0 181 372 21 11 chr6 31488490 31488584 -157790970 + MIR3 SINE MIR 15 109 -99 27 49 0 0 chr6 31488611 31488652 -157790902 + AT_rich Low_complexity Low_complexity 1 41 0 203 125 25 0 chr6 31488716 31488756 -157790798 + (TA)n Simple_repeat Simple_repeat 1 41 0 190 140 20 20 chr6 31488838 31488888 -157790666 + (TA)n Simple_repeat Simple_repeat 2 51 0 195 100 0 0 chr6 31488915 31488945 -157790609 + (CA)n Simple_repeat Simple_repeat 2 31 0 2341 107 0 0 chr6 31488973 31489282 -157790272 + AluSg SINE Alu 2 310 0 3161 199 126 3 chr6 31489284 31489989 -157789565 - L1MC4 LINE L1 -161 7881 7090 2401 49 39 0 chr6 31490056 31490342 -157789212 + AluY SINE Alu 1 297 -14 415 31 21 62 chr6 31490342 31490438 -157789116 + (TA)n Simple_repeat Simple_repeat 2 93 0 659 28 0 0 chr6 31490713 31490785 -157788769 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1104 213 5 0 chr6 31491396 31491584 -157787970 + MER5A DNA MER1_type 1 189 0 2338 95 0 3 chr6 31491620 31491925 -157787629 - AluSq SINE Alu -9 304 1 1427 164 188 33 chr6 31492548 31492849 -157786705 + MSTA LTR MaLR 2 371 -57 2494 46 0 7 chr6 31492849 31493152 -157786402 + AluY SINE Alu 4 304 -7 1427 164 188 33 chr6 31493152 31493217 -157786337 + MSTA LTR MaLR 371 425 -3 2440 90 3 0 chr6 31493507 31493818 -157785736 - AluSx SINE Alu 0 312 1 6930 142 119 86 chr6 31493923 31495566 -157783988 + pTR5 LTR ERV1 742 2438 0 1661 189 20 0 chr6 31495697 31495999 -157783555 - AluSx SINE Alu 0 312 5 5985 157 43 54 chr6 31496072 31497293 -157782261 + L1MC1 LINE L1 4 1210 -5216 4999 139 27 13 chr6 31497290 31498118 -157781436 + L1MC1 LINE L1 5644 6482 -131 * 199 324 74 19 chr6 31499759 31499867 -157779687 - L2 LINE L2 -25 3247 3134 495 155 0 0 chr6 31500078 31500149 -157779405 + tRNA-Ala-GCG tRNA tRNA 3 73 -2 255 288 61 0 chr6 31501457 31501523 -157778031 + tRNA-Ala-GCG tRNA tRNA 3 72 -3 2127 100 0 4 chr6 31502040 31502355 -157777199 - AluSc SINE Alu 0 314 1 2223 109 0 7 chr6 31502492 31502794 -157776760 - AluSx SINE Alu -12 300 1 2717 108 17 6 chr6 31503355 31503715 -157775839 - THE1B LTR MaLR 0 364 1 731 156 0 64 chr6 31503797 31503938 -157775616 - FLAM_A SINE Alu -1 132 1 2068 154 0 0 chr6 31504011 31504322 -157775232 - AluSx SINE Alu -1 311 1 254 235 0 0 chr6 31504435 31504486 -157775068 + (CAT)n Simple_repeat Simple_repeat 2 52 0 38 39 0 0 chr6 31504541 31504593 -157774961 + AT_rich Low_complexity Low_complexity 1 52 0 2444 69 0 7 chr6 31504616 31504921 -157774633 - AluY SINE Alu -8 303 1 2136 198 58 22 chr6 31505020 31505465 -157774089 + MLT2B1 LTR ERVL 10 470 -50 243 192 17 50 chr6 31505476 31505596 -157773958 + (TATAA)n Simple_repeat Simple_repeat 2 117 0 228 106 191 0 chr6 31505596 31505643 -157773911 + MLT2B1 LTR ERVL 460 515 0 2154 130 0 0 chr6 31505781 31506081 -157773473 + AluSg SINE Alu 1 300 -10 4264 129 28 43 chr6 31506095 31506838 -157772716 - L1MA10 LINE L1 -7 6327 5596 45724 31 1 2 chr6 31506839 31512986 -157766568 - L1PA3 LINE L1 -3 6152 15 1969 143 12 58 chr6 31512982 31513445 -157766109 - L1MA10 LINE L1 -548 5620 5169 * 335 286 120 17 chr6 31513447 31513622 -157765932 - L1ME LINE L1 -680 5490 5298 995 274 47 89 chr6 31513722 31513930 -157765624 + LTR16A LTR ERVL 1 216 -234 2145 90 36 0 chr6 31513930 31514207 -157765347 - AluSp SINE Alu -26 287 1 995 274 47 89 chr6 31514207 31514422 -157765132 + LTR16A LTR ERVL 216 407 -43 1808 119 45 45 chr6 31514422 31514739 -157764815 + AluSx SINE Alu 2 318 0 995 274 47 89 chr6 31514739 31514782 -157764772 + LTR16A LTR ERVL 407 450 0 251 182 15 15 chr6 31514888 31514954 -157764600 + (TA)n Simple_repeat Simple_repeat 2 67 0 1185 201 55 4 chr6 31514961 31515229 -157764325 - MER21B LTR ERV1 -539 324 19 245 307 93 0 chr6 31515226 31515301 -157764253 - MER21B LTR ERV1 -756 107 26 * 205 240 27 0 chr6 31515320 31515395 -157764159 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 1643 134 55 31 chr6 31515410 31515701 -157763853 - AluJo SINE Alu -8 304 7 5232 84 8 1 chr6 31515769 31516425 -157763129 + PABL_A LTR ERV1 1 660 0 1208 143 123 25 chr6 31516661 31516882 -157762672 + AluJb SINE Alu 1 199 -113 201 74 0 0 chr6 31516882 31516909 -157762645 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 1933 107 0 26 chr6 31516909 31517181 -157762373 + AluSx SINE Alu 1 265 -47 1208 143 123 25 chr6 31517181 31517202 -157762352 + AluJb SINE Alu 198 268 -44 245 29 0 29 chr6 31517212 31517247 -157762307 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1037 129 48 47 chr6 31517332 31517661 -157761893 + LTR35 LTR ERV1 1 390 -228 11089 175 60 75 chr6 31517794 31518612 -157760942 - MER109 Unknown Unknown -309 2123 1294 2080 102 46 0 chr6 31518612 31518896 -157760658 - AluSx SINE Alu -13 299 3 11089 175 60 75 chr6 31518896 31519471 -157760083 - MER109 Unknown Unknown -1138 1294 712 2281 119 0 0 chr6 31519471 31519773 -157759781 + AluSx SINE Alu 7 308 -4 11089 175 60 75 chr6 31519773 31519967 -157759587 - MER109 Unknown Unknown -1720 712 517 2352 97 3 3 chr6 31519967 31520276 -157759278 + AluSq SINE Alu 2 310 -3 11089 175 60 75 chr6 31520276 31521896 -157757658 - MER109 Unknown Unknown -1915 517 767 2110 107 3 10 chr6 31521896 31522205 -157757349 + AluY SINE Alu 5 311 0 11089 175 60 75 chr6 31522205 31522962 -157756592 - MER109 Unknown Unknown -1664 768 1 273 302 62 16 chr6 31522956 31523085 -157756469 - MER109 Unknown Unknown -1829 603 469 * 186 43 0 0 chr6 31523662 31523685 -157755869 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 2316 85 14 3 chr6 31523696 31523990 -157755564 - AluSq SINE Alu -16 297 1 1261 156 10 0 chr6 31524079 31524284 -157755270 - AluSq SINE Alu -104 209 3 411 231 124 18 chr6 31524294 31524463 -157755091 - L1MC5 LINE L1 -492 7469 7283 771 268 41 12 chr6 31524619 31524862 -157754692 - L1MC5 LINE L1 -734 7227 6978 394 291 81 18 chr6 31524908 31525131 -157754423 - L1 LINE L1 -1832 4314 4078 1708 154 35 18 chr6 31525228 31525513 -157754041 - AluJo SINE Alu -22 290 1 3852 74 37 22 chr6 31525783 31526321 -157753233 - LTR14 LTR ERVK 0 548 3 22 0 0 0 chr6 31526731 31526753 -157752801 + AT_rich Low_complexity Low_complexity 1 22 0 549 93 0 0 chr6 31526999 31527074 -157752480 - tRNA-Ala-GCG tRNA tRNA 0 75 1 256 250 9 52 chr6 31527931 31528047 -157751507 - L1MC4 LINE L1 -6 8036 7926 607 246 88 26 chr6 31528077 31528356 -157751198 - L1MC4 LINE L1 -98 7710 7471 2270 84 3 43 chr6 31528356 31528678 -157750876 - AluSg SINE Alu -1 309 1 607 246 88 26 chr6 31528678 31528710 -157750844 - L1MC4 LINE L1 -337 7471 7442 610 237 83 48 chr6 31578722 31578754 -157700800 + L1MC4 LINE L1 7522 7551 -491 2246 84 3 43 chr6 31578754 31579076 -157700478 + AluSg SINE Alu 1 309 -1 610 237 83 48 chr6 31579076 31579355 -157700199 + L1MC4 LINE L1 7551 7844 -198 271 250 9 52 chr6 31579385 31579501 -157700053 + L1MC4 LINE L1 7926 8036 -6 576 93 0 0 chr6 31580358 31580433 -157699121 + tRNA-Ala-GCG tRNA tRNA 1 75 0 22 0 0 0 chr6 31580679 31580701 -157698853 + AT_rich Low_complexity Low_complexity 1 22 0 4048 74 37 22 chr6 31581111 31581649 -157697905 + LTR14 LTR ERVK 3 548 0 1695 154 35 18 chr6 31581919 31582204 -157697350 + AluJo SINE Alu 1 290 -22 394 291 81 18 chr6 31582301 31582524 -157697030 + L1 LINE L1 4078 4314 -1832 771 268 41 12 chr6 31582570 31582813 -157696741 + L1MC5 LINE L1 6978 7227 -734 411 231 124 18 chr6 31582969 31583138 -157696416 + L1MC5 LINE L1 7283 7469 -492 1261 156 10 0 chr6 31583148 31583353 -157696201 + AluSq SINE Alu 3 209 -104 2316 85 14 3 chr6 31583442 31583736 -157695818 + AluSq SINE Alu 1 297 -16 186 43 0 0 chr6 31583747 31583770 -157695784 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 273 302 62 16 chr6 31584347 31584476 -157695078 + MER109 Unknown Unknown 469 603 -1829 * 11089 179 62 84 chr6 31584470 31585227 -157694327 + MER109 Unknown Unknown 1 773 -1659 2110 107 3 10 chr6 31585227 31585536 -157694018 - AluY SINE Alu 0 311 5 11089 179 62 84 chr6 31585536 31587156 -157692398 + MER109 Unknown Unknown 773 2427 -5 2352 97 3 3 chr6 31587156 31587465 -157692089 - AluSq SINE Alu -3 310 2 11089 179 62 84 chr6 31587465 31587659 -157691895 + MER109 Unknown Unknown 2427 2624 192 2281 119 0 0 chr6 31587659 31587961 -157691593 - AluSx SINE Alu -4 308 7 11089 179 62 84 chr6 31587961 31588536 -157691018 + MER109 Unknown Unknown 2624 1290 -1142 2080 102 46 0 chr6 31588536 31588820 -157690734 + AluSx SINE Alu 3 299 -13 11089 179 62 84 chr6 31588820 31589638 -157689916 + MER109 Unknown Unknown 1289 2123 -309 1037 129 48 47 chr6 31589771 31590100 -157689454 - LTR35 LTR ERV1 -228 390 1 245 29 0 29 chr6 31590185 31590220 -157689334 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1208 143 123 25 chr6 31590230 31590251 -157689303 - AluJb SINE Alu -44 268 250 1933 107 0 26 chr6 31590251 31590523 -157689031 - AluSx SINE Alu -47 265 1 201 74 0 0 chr6 31590523 31590550 -157689004 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1208 143 123 25 chr6 31590550 31590771 -157688783 - AluJb SINE Alu -61 251 1 5232 84 8 1 chr6 31591007 31591663 -157687891 - PABL_A LTR ERV1 0 660 1 1643 134 55 31 chr6 31591731 31592022 -157687532 + AluJo SINE Alu 7 304 -8 205 240 27 0 chr6 31592037 31592112 -157687442 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 245 307 93 0 chr6 31592131 31592206 -157687348 + MER21B LTR ERV1 26 107 -756 * 1185 201 55 4 chr6 31592203 31592471 -157687083 + MER21B LTR ERV1 19 324 -539 251 182 15 15 chr6 31592478 31592544 -157687010 + (TA)n Simple_repeat Simple_repeat 2 67 0 995 274 47 89 chr6 31592650 31592693 -157686861 - LTR16A LTR ERVL 0 450 407 1807 119 45 45 chr6 31592693 31593010 -157686544 - AluSx SINE Alu 0 318 2 995 274 47 89 chr6 31593010 31593225 -157686329 - LTR16A LTR ERVL -43 407 216 2145 90 36 0 chr6 31593225 31593502 -157686052 + AluSp SINE Alu 1 287 -26 995 274 47 89 chr6 31593502 31593710 -157685844 - LTR16A LTR ERVL -234 216 1 335 286 120 17 chr6 31593810 31593985 -157685569 + L1ME LINE L1 5298 5490 -680 1969 143 12 58 chr6 31593987 31594450 -157685104 + L1MA10 LINE L1 5169 5620 -548 * 45414 32 1 2 chr6 31594446 31600594 -157678960 + L1PA3 LINE L1 15 6152 -3 4264 129 28 43 chr6 31600595 31601338 -157678216 + L1MA10 LINE L1 5596 6327 -7 2154 130 0 0 chr6 31601352 31601652 -157677902 - AluSg SINE Alu -10 300 1 228 106 191 0 chr6 31601790 31601837 -157677717 - MLT2B1 LTR ERVL 0 515 460 243 192 17 50 chr6 31601837 31601957 -157677597 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 2136 198 58 22 chr6 31601968 31602413 -157677141 - MLT2B1 LTR ERVL -50 470 10 2444 69 0 7 chr6 31602512 31602817 -157676737 + AluY SINE Alu 1 303 -8 38 39 0 0 chr6 31602840 31602892 -157676662 + AT_rich Low_complexity Low_complexity 1 52 0 254 235 0 0 chr6 31602947 31602998 -157676556 + (ATG)n Simple_repeat Simple_repeat 2 52 0 2068 154 0 0 chr6 31603111 31603422 -157676132 + AluSx SINE Alu 1 311 -1 731 156 0 64 chr6 31603495 31603636 -157675918 + FLAM_A SINE Alu 1 132 -1 2717 108 17 6 chr6 31603718 31604078 -157675476 + THE1B LTR MaLR 1 364 0 2223 109 0 7 chr6 31604639 31604941 -157674613 + AluSx SINE Alu 1 300 -12 2128 100 0 4 chr6 31605078 31605393 -157674161 + AluSc SINE Alu 1 314 0 255 288 61 0 chr6 31605910 31605976 -157673578 - tRNA-Ala-GCG tRNA tRNA -3 72 3 495 155 0 0 chr6 31607284 31607355 -157672199 - tRNA-Ala-GCG tRNA tRNA -2 73 3 199 324 74 19 chr6 31607566 31607674 -157671880 + L2 LINE L2 3134 3247 -25 4999 139 27 13 chr6 31609315 31610143 -157669411 - L1MC1 LINE L1 -131 6482 5644 * 5985 157 43 54 chr6 31610140 31611361 -157668193 - L1MC1 LINE L1 -5216 1210 4 1661 189 20 0 chr6 31611434 31611736 -157667818 + AluSx SINE Alu 5 312 0 6930 142 119 86 chr6 31611867 31613510 -157666044 - pTR5 LTR ERV1 0 2438 742 2440 90 3 0 chr6 31613615 31613926 -157665628 + AluSx SINE Alu 1 312 0 1427 164 188 33 chr6 31614216 31614281 -157665273 - MSTA LTR MaLR -3 425 371 2494 46 0 7 chr6 31614281 31614584 -157664970 - AluY SINE Alu -7 304 4 1427 164 188 33 chr6 31614584 31614885 -157664669 - MSTA LTR MaLR -57 371 2 2338 95 0 3 chr6 31615508 31615813 -157663741 + AluSq SINE Alu 1 304 -9 1104 213 5 0 chr6 31615849 31616037 -157663517 - MER5A DNA MER1_type 0 189 1 659 28 0 0 chr6 31616648 31616720 -157662834 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 415 31 21 62 chr6 31616995 31617091 -157662463 + (TA)n Simple_repeat Simple_repeat 2 93 0 2401 49 39 0 chr6 31617091 31617377 -157662177 - AluY SINE Alu -14 297 1 3161 199 126 3 chr6 31617444 31618149 -157661405 + L1MC4 LINE L1 7090 7881 -161 2341 107 0 0 chr6 31618151 31618460 -157661094 - AluSg SINE Alu 0 310 2 195 100 0 0 chr6 31618488 31618518 -157661036 + (TG)n Simple_repeat Simple_repeat 2 31 0 190 140 20 20 chr6 31618545 31618595 -157660959 + (TA)n Simple_repeat Simple_repeat 2 51 0 203 125 25 0 chr6 31618677 31618717 -157660837 + (TA)n Simple_repeat Simple_repeat 1 41 0 27 49 0 0 chr6 31618781 31618822 -157660732 + AT_rich Low_complexity Low_complexity 1 41 0 181 372 21 11 chr6 31618849 31618943 -157660611 - MIR3 SINE MIR -99 109 15 21 0 0 0 chr6 31620799 31620820 -157658734 + AT_rich Low_complexity Low_complexity 1 21 0 275 237 169 34 chr6 31620872 31621049 -157658505 + MIR SINE MIR 49 249 -13 635 54 0 0 chr6 31621410 31621484 -157658070 - tRNA-Thr-ACT tRNA tRNA -3 74 1 228 354 0 0 chr6 31622903 31622985 -157656569 - L2 LINE L2 -11 3302 3221 2474 85 0 0 chr6 31623259 31623564 -157655990 + AluSx SINE Alu 1 305 -7 1090 134 32 0 chr6 31623566 31623723 -157655831 - THE1C LTR MaLR -213 162 1 2568 154 22 46 chr6 31624004 31624169 -157655385 + MLT1C LTR MaLR 19 186 -281 2285 78 3 10 chr6 31624169 31624462 -157655092 + AluSq SINE Alu 3 293 -20 2568 154 22 46 chr6 31624462 31624756 -157654798 + MLT1C LTR MaLR 186 467 0 7267 110 35 30 chr6 31626067 31626732 -157652822 + Tigger3b DNA MER2_type 1 661 -2367 2242 103 0 31 chr6 31626732 31627051 -157652503 - AluSx SINE Alu -3 309 1 7267 110 35 30 chr6 31627051 31627350 -157652204 + Tigger3b DNA MER2_type 661 962 -2066 1485 164 12 0 chr6 31627350 31627600 -157651954 - AluJb SINE Alu -59 253 1 7267 110 35 30 chr6 31627600 31627872 -157651682 + Tigger3b DNA MER2_type 962 1231 0 2421 64 10 0 chr6 31627891 31628186 -157651368 + AluY SINE Alu 1 298 -13 21 36 0 0 chr6 31629144 31629172 -157650382 + AT_rich Low_complexity Low_complexity 1 28 0 1739 92 0 0 chr6 31631057 31631284 -157648270 - AluSq SINE Alu -2 311 85 622 56 0 0 chr6 31631440 31631512 -157648042 - tRNA-Ala-GCG tRNA tRNA -3 72 1 22 35 0 0 chr6 31631572 31631601 -157647953 + AT_rich Low_complexity Low_complexity 1 29 0 482 161 117 0 chr6 31632595 31632697 -157646857 + MLT1A2 LTR MaLR 274 372 -2 688 249 76 10 chr6 31633080 31633277 -157646277 + L1MEc LINE L1 44 253 -6143 358 185 0 0 chr6 31633278 31633343 -157646211 + MLT2D LTR ERVL 1 65 -399 959 147 76 76 chr6 31633378 31633454 -157646100 + MLT2D LTR ERVL 53 128 -286 1741 147 47 0 chr6 31633454 31633733 -157645821 + AluSx SINE Alu 1 292 -20 959 147 76 76 chr6 31633733 31633867 -157645687 + MLT2D LTR ERVL 127 263 -151 529 270 0 45 chr6 31634766 31634988 -157644566 - MER20B DNA MER1_type -3 780 569 824 282 82 68 chr6 31635032 31635191 -157644363 - MER20B DNA MER1_type -222 561 406 1959 95 77 0 chr6 31635191 31635464 -157644090 - AluSg SINE Alu -15 295 2 824 282 82 68 chr6 31635464 31635567 -157643987 - MER20B DNA MER1_type -377 406 306 2342 76 0 13 chr6 31635567 31635868 -157643686 + AluSx SINE Alu 1 297 -15 824 282 82 68 chr6 31635868 31636115 -157643439 - MER20B DNA MER1_type -477 306 44 309 347 28 34 chr6 31636142 31636318 -157643236 + MLT1L LTR MaLR 156 330 -285 607 189 213 37 chr6 31636418 31636582 -157642972 - MER41D LTR ERV1 0 557 365 2303 108 3 0 chr6 31636595 31636901 -157642653 + AluSx SINE Alu 1 307 -5 454 286 112 6 chr6 31637248 31637409 -157642145 + MLT1L LTR MaLR 434 611 -4 27 29 0 0 chr6 31637440 31637474 -157642080 + AT_rich Low_complexity Low_complexity 1 34 0 1727 86 86 19 chr6 31637474 31637606 -157641948 - AluSx SINE Alu -26 286 164 2288 95 16 3 chr6 31637606 31637910 -157641644 - AluSq SINE Alu -5 308 1 1727 86 86 19 chr6 31637910 31638044 -157641510 - AluSx SINE Alu -148 164 2 386 279 54 54 chr6 31638051 31638198 -157641356 - L2 LINE L2 -605 2709 2563 * 482 242 32 8 chr6 31638167 31638291 -157641263 + L2 LINE L2 3184 3310 -3 1147 207 76 32 chr6 31638439 31638623 -157640931 + MER101B LTR ERV1 26 146 -328 1978 65 0 4 chr6 31638623 31638871 -157640683 + AluY SINE Alu 62 308 -3 1147 207 76 32 chr6 31638871 31639065 -157640489 + MER101B LTR ERV1 146 330 -144 485 273 13 33 chr6 31639126 31639276 -157640278 + L2 LINE L2 2292 2438 -876 2269 85 16 0 chr6 31639351 31639657 -157639897 - AluY SINE Alu 0 311 1 549 358 118 16 chr6 31639880 31640575 -157638979 - L2 LINE L2 -982 2332 1567 312 226 0 118 chr6 31640626 31640691 -157638863 + MER5A DNA MER1_type 12 62 -127 2200 123 3 0 chr6 31640691 31640999 -157638555 + AluSg SINE Alu 1 309 -1 312 226 0 118 chr6 31640999 31641035 -157638519 + MER5A DNA MER1_type 62 101 -88 220 315 145 21 chr6 31641119 31641354 -157638200 - L2 LINE L2 -1805 1509 1246 273 309 24 0 chr6 31641360 31641444 -157638110 + MIR3 SINE MIR 96 181 -27 2337 170 60 32 chr6 31642067 31642531 -157637023 + MLT1D LTR MaLR 1 477 -28 2192 113 3 3 chr6 31642684 31642995 -157636559 - AluSq SINE Alu -2 311 1 2554 72 3 0 chr6 31642995 31643301 -157636253 - AluSp SINE Alu -6 307 1 630 311 44 20 chr6 31643314 31643565 -157635989 - MIR SINE MIR -4 258 2 419 358 7 7 chr6 31643628 31643776 -157635778 - L2 LINE L2 -2489 825 678 2118 98 10 16 chr6 31643852 31644157 -157635397 - AluSp SINE Alu -10 303 1 869 181 0 0 chr6 31644226 31644353 -157635201 - FLAM_C SINE Alu -6 127 1 1742 171 26 19 chr6 31644362 31644672 -157634882 - AluJb SINE Alu 0 312 1 1969 113 27 14 chr6 31644704 31644996 -157634558 + AluSc SINE Alu 3 298 -11 721 128 0 10 chr6 31645754 31645856 -157633698 - AluSq SINE Alu -84 229 129 814 143 0 0 chr6 31646214 31646340 -157633214 - AluSg/x SINE Alu -44 266 141 683 0 0 0 chr6 31647039 31647111 -157632443 - tRNA-Ala-GCG tRNA tRNA -3 72 1 6497 144 19 29 chr6 31647968 31649203 -157630351 + L1MC1 LINE L1 5101 6321 -12 207 0 0 0 chr6 31649207 31649230 -157630324 + (A)n Simple_repeat Simple_repeat 1 23 0 2467 50 3 31 chr6 31649381 31649698 -157629856 + AluY SINE Alu 1 308 -3 1347 184 76 17 chr6 31649967 31650091 -157629463 + AluJb SINE Alu 1 116 -196 438 20 0 0 chr6 31650091 31650142 -157629412 + (TAA)n Simple_repeat Simple_repeat 2 52 0 1347 184 76 17 chr6 31650142 31650305 -157629249 + AluJb SINE Alu 116 305 -7 337 129 75 54 chr6 31650522 31650615 -157628939 - L1MC1 LINE L1 0 6333 6239 1189 217 53 38 chr6 31650622 31650963 -157628591 - L1M4 LINE L1 -2365 3781 3436 350 250 42 10 chr6 31651012 31651037 -157628517 - L1MC5 LINE L1 -53 7908 7885 2001 131 7 0 chr6 31651037 31651335 -157628219 + AluSx SINE Alu 1 300 -12 350 250 42 10 chr6 31651335 31651405 -157628149 - L1MC5 LINE L1 -76 7885 7810 262 111 0 0 chr6 31651504 31651540 -157628014 + MLT1F LTR MaLR 507 542 0 6086 120 32 57 chr6 31651781 31652858 -157626696 - L1MA3 LINE L1 0 6305 5255 21 36 0 0 chr6 31652999 31653027 -157626527 + AT_rich Low_complexity Low_complexity 1 28 0 255 228 51 0 chr6 31653156 31653235 -157626319 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 1933 138 18 0 chr6 31654208 31654515 -157625039 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 31654859 31654881 -157624673 + AT_rich Low_complexity Low_complexity 1 22 0 3588 143 48 98 chr6 31655794 31656613 -157622941 + LTR5 LTR ERVK 190 967 -2 5126 119 17 4 chr6 31656615 31657362 -157622192 + HERVK LTR ERVK 1 757 -6486 37069 140 13 15 chr6 31657435 31660585 -157618969 + HERVK LTR ERVK 733 3887 -3530 5262 144 36 42 chr6 31660585 31661560 -157617994 + LTR5 LTR ERVK 1 969 0 37069 140 13 15 chr6 31661560 31665205 -157614349 + HERVK LTR ERVK 3887 7392 -25 5293 136 57 35 chr6 31665214 31666162 -157613392 + LTR5 LTR ERVK 1 969 0 554 81 0 0 chr6 31666162 31666236 -157613318 - AluJ/FLAM SINE Alu -237 75 2 465 149 0 14 chr6 31666413 31666487 -157613067 - tRNA-Lys-AAA tRNA tRNA -3 73 1 564 15 0 0 chr6 31668216 31668281 -157611273 + (CA)n Simple_repeat Simple_repeat 1 65 0 2566 59 0 3 chr6 31668644 31668951 -157610603 - AluY SINE Alu -5 306 1 529 125 0 0 chr6 31669115 31669187 -157610367 - tRNA-Ala-GCG tRNA tRNA -3 72 1 246 240 0 0 chr6 31670350 31670400 -157609154 - tRNA-Phe-TTC tRNA tRNA -26 50 1 2011 145 3 0 chr6 31671339 31671642 -157607912 + AluSx SINE Alu 1 304 -8 411 21 0 0 chr6 31672137 31672185 -157607369 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 2285 101 0 3 chr6 31672187 31672485 -157607069 + AluSg SINE Alu 2 298 -12 268 204 0 0 chr6 31672664 31672713 -157606841 + MER5B DNA MER1_type 127 175 -3 2204 108 3 0 chr6 31673202 31673499 -157606055 + AluSp SINE Alu 1 298 -15 2209 141 0 0 chr6 31674795 31675107 -157604447 - AluSx SINE Alu 0 312 1 1732 141 8 0 chr6 31675587 31675835 -157603719 - AluSx SINE Alu -23 289 40 411 149 0 0 chr6 31676178 31676252 -157603302 + (A)n Simple_repeat Simple_repeat 1 74 0 2654 129 41 10 chr6 31676310 31676728 -157602826 - MER65A LTR ERV1 0 445 15 217 246 15 15 chr6 31677272 31677337 -157602217 + CT-rich Low_complexity Low_complexity 2 66 0 222 179 0 0 chr6 31677358 31677414 -157602140 + T-rich Low_complexity Low_complexity 1 56 0 1977 189 68 16 chr6 31677679 31678118 -157601436 + MLT1C LTR MaLR 6 467 0 1619 266 67 32 chr6 31678169 31678703 -157600851 - ERVL LTR ERVL -364 5400 4848 241 286 76 25 chr6 31679043 31679162 -157600392 + L1ME LINE L1 785 909 -5621 2157 72 0 82 chr6 31679285 31679604 -157599950 - AluYa5 SINE Alu -18 293 1 960 242 117 41 chr6 31679628 31679902 -157599652 + L1ME LINE L1 999 1251 -5289 1452 184 19 42 chr6 31679902 31680212 -157599342 + AluJo SINE Alu 4 306 -6 960 242 117 41 chr6 31680212 31680589 -157598965 + L1ME LINE L1 1251 1714 -4826 890 145 8 0 chr6 31680608 31680739 -157598815 + AluJ SINE Alu 2 133 -169 533 28 0 28 chr6 31680742 31680814 -157598740 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 830 200 0 57 chr6 31680819 31680994 -157598560 + AluJ SINE Alu 134 298 -14 888 264 136 45 chr6 31680995 31681732 -157597822 + L1ME LINE L1 1732 2534 -4006 1048 123 62 47 chr6 31681736 31681947 -157597607 + L1MC/D LINE L1 5254 5467 -775 1969 90 3 61 chr6 31682150 31682461 -157597093 + AluSg SINE Alu 18 310 0 180 258 0 32 chr6 31682938 31683000 -157596554 - MER5A DNA MER1_type -26 163 104 515 125 0 0 chr6 31683772 31683844 -157595710 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 4470 155 50 11 chr6 31684038 31684825 -157594729 + Tigger7 DNA MER2_type 25 841 -1646 2028 123 17 7 chr6 31684944 31685244 -157594310 + AluSx SINE Alu 1 303 -9 811 237 0 0 chr6 31685767 31685919 -157593635 + AluSg/x SINE Alu 132 283 -27 343 168 35 0 chr6 31685919 31686062 -157593492 + (TA)n Simple_repeat Simple_repeat 1 148 0 1623 201 7 0 chr6 31686306 31686609 -157592945 - AluJo SINE Alu -7 305 1 3653 172 40 37 chr6 31686989 31687698 -157591856 + MER50 LTR ERV1 1 711 -23 1699 118 0 12 chr6 31687783 31688029 -157591525 + AluSg SINE Alu 60 302 -8 259 105 35 0 chr6 31688755 31688812 -157590742 + (TA)n Simple_repeat Simple_repeat 2 60 0 2392 92 3 0 chr6 31689108 31689412 -157590142 - AluSp SINE Alu -8 305 1 1910 121 35 0 chr6 31689418 31689700 -157589854 - AluSg SINE Alu -18 292 1 298 253 42 11 chr6 31689728 31689823 -157589731 - L1MD3 LINE L1 -8 7987 7890 1237 119 115 33 chr6 31690105 31690348 -157589206 - Tigger7 DNA MER2_type -1837 650 388 931 141 25 6 chr6 31690321 31690484 -157589070 - Tigger7 DNA MER2_type -1975 512 347 * 2686 42 0 0 chr6 31691576 31691886 -157587668 + AluY SINE Alu 2 311 0 1980 141 0 3 chr6 31691904 31692201 -157587353 + AluSx SINE Alu 5 300 -12 259 289 22 11 chr6 31692421 31692511 -157587043 + MIR SINE MIR 22 112 -150 2489 65 7 3 chr6 31693263 31693570 -157585984 - AluSp SINE Alu -5 308 1 2008 111 11 4 chr6 31694197 31694477 -157585077 + AluSx SINE Alu 14 295 -17 232 214 18 0 chr6 31694489 31694545 -157585009 + (TA)n Simple_repeat Simple_repeat 2 58 0 226 274 0 0 chr6 31694619 31694670 -157584884 + tRNA-Lys-AAA tRNA tRNA 20 70 -6 451 245 107 43 chr6 31694866 31695119 -157584435 - L1MC4a LINE L1 -1451 6357 6089 522 111 0 0 chr6 31695420 31695492 -157584062 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 29 0 0 0 chr6 31695644 31695673 -157583881 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr6 31695925 31695960 -157583594 + AT_rich Low_complexity Low_complexity 1 35 0 1104 131 113 5 chr6 31695963 31696185 -157583369 - L1MA8 LINE L1 -63 6228 5983 217 0 61 0 chr6 31696470 31696503 -157583051 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1861 112 11 0 chr6 31696503 31696779 -157582775 - AluSq SINE Alu -33 280 2 269 208 19 0 chr6 31696891 31696944 -157582610 - MER45 DNA AcHobo -899 54 1 439 163 75 0 chr6 31697591 31697671 -157581883 + LTR54 LTR ERV1 1 86 -424 236 235 0 0 chr6 31697809 31697860 -157581694 + MER57A LTR ERV1 301 351 -52 1467 114 5 0 chr6 31698114 31698307 -157581247 + AluSp SINE Alu 1 194 -119 277 205 66 16 chr6 31698485 31698607 -157580947 + AluSp SINE Alu 176 303 0 207 272 52 0 chr6 31699171 31699307 -157580247 + (TA)n Simple_repeat Simple_repeat 1 143 0 823 235 30 6 chr6 31699307 31699473 -157580081 - MLT1E LTR MaLR -421 172 3 832 136 30 77 chr6 31699525 31699694 -157579860 + MLT1A1 LTR MaLR 1 161 -204 5567 197 69 6 chr6 31699696 31700597 -157578957 - Cheshire DNA MER1_type -14 2406 1404 312 27 0 0 chr6 31700597 31700634 -157578920 + (CA)n Simple_repeat Simple_repeat 2 38 0 5567 197 69 6 chr6 31700634 31700981 -157578573 - Cheshire DNA MER1_type -1016 1404 1080 2330 107 0 3 chr6 31700990 31701299 -157578255 + AluSx SINE Alu 1 308 -4 661 40 0 0 chr6 31702097 31702171 -157577383 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 1123 185 30 17 chr6 31702716 31702948 -157576606 - MER45B DNA AcHobo -1 1039 805 441 287 67 18 chr6 31702963 31703127 -157576427 - MER45B DNA AcHobo -787 253 82 432 192 0 0 chr6 31703157 31703230 -157576324 - tRNA-Phe-TTC tRNA tRNA -3 73 1 31 0 0 0 chr6 31703515 31703546 -157576008 + AT_rich Low_complexity Low_complexity 1 31 0 423 0 0 0 chr6 31704636 31704683 -157574871 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 189 0 0 0 chr6 31704683 31704704 -157574850 + (TG)n Simple_repeat Simple_repeat 1 21 0 1070 40 0 0 chr6 31704704 31704830 -157574724 - AluY SINE Alu -29 282 157 524 83 0 0 chr6 31705394 31705466 -157574088 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 288 0 0 0 chr6 31705839 31705871 -157573683 + (A)n Simple_repeat Simple_repeat 1 32 0 2177 71 58 3 chr6 31706376 31706670 -157572884 + AluSx SINE Alu 1 310 -2 444 118 10 39 chr6 31709049 31709151 -157570403 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 1960 104 39 0 chr6 31710193 31710473 -157569081 - AluSx SINE Alu -21 291 1 1786 60 0 38 chr6 31710977 31711212 -157568342 - AluY SINE Alu -6 305 80 517 151 0 0 chr6 31711507 31711580 -157567974 - tRNA-Ala-GCG tRNA tRNA -2 73 1 216 0 0 0 chr6 31711911 31711935 -157567619 + (CA)n Simple_repeat Simple_repeat 2 25 0 5720 170 13 31 chr6 31712028 31712350 -157567204 + L1MA10 LINE L1 4974 5300 -1034 243 0 0 0 chr6 31712350 31712377 -157567177 + (CA)n Simple_repeat Simple_repeat 1 27 0 5720 170 13 31 chr6 31712377 31713229 -157566325 + L1MA10 LINE L1 5300 6130 -204 2509 46 3 10 chr6 31713229 31713535 -157566019 + AluY SINE Alu 1 304 -7 5720 170 13 31 chr6 31713535 31713729 -157565825 + L1MA10 LINE L1 6130 6326 -8 663 146 0 146 chr6 31713890 31714054 -157565500 - FLAM_C SINE Alu -3 140 1 41 0 0 19 chr6 31715438 31715462 -157564092 + AT_rich Low_complexity Low_complexity 1 24 -27 2269 84 0 0 chr6 31715462 31715758 -157563796 - AluSx SINE Alu -16 296 1 41 0 0 19 chr6 31715758 31715785 -157563769 + AT_rich Low_complexity Low_complexity 24 51 0 1734 177 0 13 chr6 31715785 31716090 -157563464 + AluJo SINE Alu 1 301 -11 418 182 61 0 chr6 31716126 31716192 -157563362 + AluJ/FLAM SINE Alu 12 81 -231 2087 132 3 3 chr6 31716339 31716649 -157562905 - AluSx SINE Alu 0 312 3 2168 69 14 28 chr6 31716716 31717034 -157562520 + AluY SINE Alu 1 314 0 261 221 0 0 chr6 31717638 31717706 -157561848 + CT-rich Low_complexity Low_complexity 3 70 0 470 162 60 62 chr6 31717946 31718098 -157561456 - L1MC3 LINE L1 -1 7765 6193 2093 102 0 0 chr6 31718100 31718375 -157561179 + AluSx SINE Alu 2 276 -36 207 0 0 0 chr6 31718377 31718400 -157561154 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2585 58 0 6 chr6 31718402 31718715 -157560839 + AluSx SINE Alu 2 312 0 571 56 0 0 chr6 31719032 31719103 -157560451 - tRNA-Arg-CGA tRNA tRNA -5 71 1 1154 163 5 10 chr6 31719545 31719747 -157559807 + L1PA16 LINE L1 5966 6166 0 267 93 0 0 chr6 31720687 31720730 -157558824 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 301 200 0 0 chr6 31720731 31720781 -157558773 - MER66A LTR ERV1 -142 336 287 555 16 0 0 chr6 31721422 31721486 -157558068 + (TG)n Simple_repeat Simple_repeat 2 65 0 5504 124 52 19 chr6 31721584 31722071 -157557483 + L1MA3 LINE L1 5346 5816 -489 3730 65 135 68 chr6 31722071 31722643 -157556911 - LTR66 LTR ERVL 0 610 1 5504 124 52 19 chr6 31722643 31723085 -157556469 + L1MA3 LINE L1 5816 6305 0 607 82 0 0 chr6 31723830 31723903 -157555651 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2780 160 6 23 chr6 31723958 31724434 -157555120 + MER1A DNA MER1_type 62 529 0 3440 237 63 54 chr6 31724705 31725162 -157554392 + L1MDa LINE L1 1696 2147 -4393 2081 136 0 3 chr6 31725162 31725472 -157554082 + AluSg SINE Alu 1 309 -1 3440 237 63 54 chr6 31725472 31725706 -157553848 + L1MDa LINE L1 2147 2377 -4163 1501 84 21 0 chr6 31725706 31725897 -157553657 + AluSx SINE Alu 1 195 -117 3440 237 63 54 chr6 31725897 31726311 -157553243 + L1MDa LINE L1 2377 2786 -3754 2152 140 0 0 chr6 31726311 31726618 -157552936 - AluSq SINE Alu -6 307 1 3440 237 63 54 chr6 31726618 31727523 -157552031 + L1MDa LINE L1 2786 3733 -2807 1036 104 15 4 chr6 31727543 31727749 -157551805 + AluSq SINE Alu 2 284 -29 332 203 28 40 chr6 31728136 31728313 -157551241 + (TATAA)n Simple_repeat Simple_repeat 4 178 0 1507 253 47 44 chr6 31728349 31728381 -157551173 + L1MDa LINE L1 3722 3752 -2788 2877 83 193 43 chr6 31728381 31728488 -157551066 - LTR61 LTR ERV1 0 595 505 2232 106 10 0 chr6 31728488 31728791 -157550763 + AluSx SINE Alu 1 306 -6 2877 83 193 43 chr6 31728791 31729200 -157550354 - LTR61 LTR ERV1 -90 505 1 1507 253 47 44 chr6 31729200 31729369 -157550185 + L1MDa LINE L1 3752 3919 -2621 2324 99 0 0 chr6 31729369 31729663 -157549891 + AluSq SINE Alu 1 294 -19 1507 253 47 44 chr6 31729663 31729721 -157549833 + L1MDa LINE L1 3919 3975 -2565 2014 60 108 4 chr6 31729721 31729989 -157549565 + AluY SINE Alu 1 296 -15 1507 253 47 44 chr6 31729989 31730382 -157549172 + L1MDa LINE L1 3975 4379 -2161 1708 127 48 65 chr6 31730413 31730465 -157549089 - THE1C LTR MaLR 0 375 324 2155 113 0 0 chr6 31730465 31730758 -157548796 - AluSg SINE Alu -15 295 3 1708 127 48 65 chr6 31730758 31731059 -157548495 - THE1C LTR MaLR -51 324 19 559 237 290 15 chr6 31731125 31731387 -157548167 + L1M4 LINE L1 4751 5084 -1062 2033 117 29 0 chr6 31731589 31732033 -157547521 + AluSx SINE Alu 1 452 0 533 177 14 99 chr6 31732351 31732378 -157547176 - MER5A DNA MER1_type 0 189 161 2274 92 3 0 chr6 31732378 31732673 -157546881 + AluSg SINE Alu 1 296 -14 533 177 14 99 chr6 31732673 31732786 -157546768 - MER5A DNA MER1_type -28 161 61 2303 88 3 0 chr6 31733479 31733773 -157545781 - AluSp SINE Alu -16 297 3 21 0 0 0 chr6 31734104 31734125 -157545429 + GC_rich Low_complexity Low_complexity 1 21 0 561 69 0 0 chr6 31734459 31734531 -157545023 - tRNA-Ala-GCG tRNA tRNA -3 72 1 989 183 6 0 chr6 31735021 31735196 -157544358 + FRAM SINE Alu 1 173 -3 2207 101 3 14 chr6 31735626 31735944 -157543610 + AluSq SINE Alu 1 313 0 736 209 32 102 chr6 31736714 31736828 -157542726 + MER33 DNA MER1_type 1 111 -2474 2315 106 0 0 chr6 31736828 31737130 -157542424 + AluSg SINE Alu 1 302 -8 204 97 0 0 chr6 31737130 31737161 -157542393 + (TA)n Simple_repeat Simple_repeat 1 31 0 736 209 32 102 chr6 31737161 31737292 -157542262 + MER33 DNA MER1_type 110 208 -2377 1163 133 9 64 chr6 31737292 31737510 -157542044 + L1PA16 LINE L1 5952 6157 -9 736 209 32 102 chr6 31737510 31737615 -157541939 + MER33 DNA MER1_type 208 319 -5 1359 166 7 83 chr6 31738486 31738787 -157540767 + AluJb SINE Alu 1 278 -34 807 42 42 0 chr6 31738791 31738909 -157540645 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 2096 108 3 3 chr6 31739203 31739490 -157540064 + AluSx SINE Alu 1 287 -25 548 82 0 14 chr6 31739688 31739761 -157539793 - tRNA-Phe-TTC tRNA tRNA -4 72 1 1267 93 11 11 chr6 31739861 31740043 -157539511 + AluSg/x SINE Alu 124 305 -7 669 138 0 204 chr6 31740151 31740376 -157539178 - AluSg/x SINE Alu -10 300 122 607 29 0 0 chr6 31740477 31740546 -157539008 + tRNA-Phe-TTC tRNA tRNA 1 69 -7 2302 106 0 0 chr6 31741212 31741524 -157538030 + AluSx SINE Alu 1 312 0 3660 126 30 4 chr6 31742269 31742811 -157536743 - LTR6A LTR ERV1 0 564 9 60739 135 10 10 chr6 31742821 31750040 -157529514 - HERVS71 LTR ERV1 -41 8937 1719 2467 58 10 0 chr6 31750040 31750332 -157529222 + AluY SINE Alu 1 295 -16 60739 135 10 10 chr6 31750332 31752048 -157527506 - HERVS71 LTR ERV1 -7259 1719 4 3671 122 28 4 chr6 31752050 31752593 -157526961 - LTR6A LTR ERV1 0 564 9 24 0 0 0 chr6 31753787 31753811 -157525743 + AT_rich Low_complexity Low_complexity 1 24 0 2394 106 0 0 chr6 31753838 31754198 -157525356 + AluY SINE Alu 1 360 0 326 288 0 0 chr6 31754862 31754935 -157524619 - tRNA-Ala-GCG tRNA tRNA -2 73 1 531 0 0 0 chr6 31755062 31755121 -157524433 + (TC)n Simple_repeat Simple_repeat 1 59 0 3233 238 101 40 chr6 31755310 31756177 -157523377 + L1MC4 LINE L1 6098 7031 -777 2479 66 0 0 chr6 31756177 31756480 -157523074 + AluY SINE Alu 2 304 -7 3233 238 101 40 chr6 31756480 31757196 -157522358 + L1MC4 LINE L1 7031 7702 -106 253 291 12 12 chr6 31757548 31757634 -157521920 + GA-rich Low_complexity Low_complexity 4 89 0 2505 55 3 3 chr6 31757772 31758081 -157521473 + AluY SINE Alu 1 309 -2 754 219 0 64 chr6 31758352 31758629 -157520925 + FAM SINE Alu 1 129 0 502 259 199 19 chr6 31758640 31758908 -157520646 + L1M4 LINE L1 2183 2401 -3745 1984 97 3 45 chr6 31758908 31759220 -157520334 + AluSc SINE Alu 1 300 0 2108 91 3 47 chr6 31759228 31759513 -157520041 + AluSx SINE Alu 5 276 -36 257 50 0 25 chr6 31759513 31759553 -157520001 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 2108 91 3 47 chr6 31759553 31759586 -157519968 + AluSx SINE Alu 276 309 -3 502 259 199 19 chr6 31759586 31759628 -157519926 + L1M4 LINE L1 2406 2561 -3585 2154 64 4 0 chr6 31760103 31760368 -157519186 - AluY SINE Alu -42 269 4 1047 245 62 28 chr6 31760376 31760845 -157518709 + L1M4 LINE L1 2557 3041 -3105 675 84 11 0 chr6 31760848 31760943 -157518611 + AluSg1 SINE Alu 2 97 -212 315 0 0 0 chr6 31760943 31760978 -157518576 + (A)n Simple_repeat Simple_repeat 1 35 0 1000 264 68 32 chr6 31760979 31761475 -157518079 + L1M4 LINE L1 3028 3541 -2605 2160 99 0 0 chr6 31761511 31761784 -157517770 - AluSx SINE Alu -31 281 9 1529 105 37 131 chr6 31763200 31763551 -157516003 - AluYb8 SINE Alu 0 318 1 534 180 57 8 chr6 31764032 31764154 -157515400 - MER5A DNA MER1_type 0 189 62 211 216 0 0 chr6 31765146 31765197 -157514357 + A-rich Low_complexity Low_complexity 1 51 0 2175 106 30 0 chr6 31765201 31765502 -157514052 + AluSx SINE Alu 2 311 -1 582 56 0 0 chr6 31765867 31765939 -157513615 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1084 74 14 0 chr6 31766087 31766235 -157513319 + AluSq SINE Alu 148 297 -16 276 30 0 0 chr6 31766343 31766376 -157513178 + (TG)n Simple_repeat Simple_repeat 2 34 0 2440 60 13 0 chr6 31766466 31766768 -157512786 + AluSp SINE Alu 1 306 -7 679 0 0 0 chr6 31766819 31766892 -157512662 - tRNA-Phe-TTC tRNA tRNA -3 73 1 1377 268 99 41 chr6 31767946 31768180 -157511374 + L1ME3 LINE L1 5186 5405 -757 1740 158 24 3 chr6 31768180 31768471 -157511083 + AluSx SINE Alu 2 298 -14 1377 268 99 41 chr6 31768471 31768623 -157510931 + L1ME3 LINE L1 5405 5547 -615 396 0 0 0 chr6 31768623 31768667 -157510887 + (TA)n Simple_repeat Simple_repeat 2 45 0 1377 268 99 41 chr6 31768667 31768914 -157510640 + L1ME3 LINE L1 5547 5778 -384 2431 93 0 0 chr6 31768914 31769224 -157510330 + AluY SINE Alu 1 310 -1 1377 268 99 41 chr6 31769224 31769290 -157510264 + L1ME3 LINE L1 5778 5839 -323 817 179 153 85 chr6 31769290 31769566 -157509988 + MLT1A1 LTR MaLR 1 257 -108 2058 120 0 7 chr6 31769566 31769849 -157509705 + AluSq SINE Alu 1 281 -32 300 27 0 0 chr6 31769850 31769887 -157509667 + (GGGAA)n Simple_repeat Simple_repeat 2 38 0 817 179 153 85 chr6 31769887 31769948 -157509606 + MLT1A1 LTR MaLR 256 363 -2 1377 268 99 41 chr6 31769948 31770099 -157509455 + L1ME3 LINE L1 5839 6075 -87 180 0 0 0 chr6 31770233 31770253 -157509301 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 471 153 0 0 chr6 31772057 31772129 -157507425 - tRNA-Ala-GCG tRNA tRNA -3 72 1 2287 88 24 0 chr6 31772288 31772665 -157506889 + AluSg1 SINE Alu 1 384 0 823 237 122 101 chr6 31772823 31772967 -157506587 + L1MC4a LINE L1 6098 6238 -1570 326 0 0 0 chr6 31772967 31773002 -157506552 + U2 snRNA snRNA 1 35 -153 823 237 122 101 chr6 31773002 31773331 -157506223 + L1MC4a LINE L1 6238 6623 -1185 2114 127 13 3 chr6 31773331 31773630 -157505924 + AluSx SINE Alu 1 302 -10 823 237 122 101 chr6 31773630 31773763 -157505791 + L1MC4a LINE L1 6623 6752 -1056 406 129 0 0 chr6 31773792 31773854 -157505700 + Alu SINE Alu 236 297 -15 2302 232 66 34 chr6 31773854 31774642 -157504912 + L1MC4 LINE L1 7089 7901 -141 281 67 0 22 chr6 31774672 31774717 -157504837 + (TA)n Simple_repeat Simple_repeat 2 45 0 305 228 11 33 chr6 31774724 31774816 -157504738 + L1MC4 LINE L1 6614 6703 -1339 307 215 21 43 chr6 31774818 31774911 -157504643 + L1MC4 LINE L1 6613 6703 -1339 440 93 0 41 chr6 31774917 31775014 -157504540 + (TA)n Simple_repeat Simple_repeat 2 94 0 2151 244 51 32 chr6 31775372 31775555 -157503999 + L1M4 LINE L1 2429 2607 -3539 2501 51 0 7 chr6 31775555 31775850 -157503704 + AluY SINE Alu 1 293 -18 2151 244 51 32 chr6 31775850 31776402 -157503152 + L1M4 LINE L1 2607 3186 -2960 186 43 0 0 chr6 31776402 31776425 -157503129 + (CA)n Simple_repeat Simple_repeat 2 24 0 2151 244 51 32 chr6 31776425 31776583 -157502971 + L1M4 LINE L1 3186 3340 -2806 2136 117 3 0 chr6 31776587 31776905 -157502649 + AluSx SINE Alu 1 319 0 546 198 50 8 chr6 31777072 31777193 -157502361 - MER5A DNA MER1_type 0 189 64 2270 67 7 7 chr6 31778281 31778609 -157500945 + AluSq SINE Alu 1 328 0 539 70 14 0 chr6 31778887 31778958 -157500596 - tRNA-Ala-GCG tRNA tRNA -3 72 1 591 235 29 0 chr6 31779439 31779575 -157499979 + FRAM SINE Alu 1 137 -39 207 0 0 0 chr6 31779576 31779599 -157499955 + (CAAG)n Simple_repeat Simple_repeat 2 24 0 458 174 20 0 chr6 31779612 31779710 -157499844 + GA-rich Low_complexity Low_complexity 2 101 0 225 254 0 0 chr6 31780492 31780547 -157499007 + (TG)n Simple_repeat Simple_repeat 2 56 0 847 167 72 85 chr6 31780931 31781153 -157498401 + MER33 DNA MER1_type 1 214 -2371 1160 144 25 5 chr6 31781153 31781355 -157498199 + L1PA16 LINE L1 5952 6157 -9 847 167 72 85 chr6 31781355 31781376 -157498178 + MER33 DNA MER1_type 214 234 -2351 2502 53 3 25 chr6 31781376 31781512 -157498042 + AluSp SINE Alu 1 138 -175 2274 55 31 3 chr6 31781512 31781801 -157497753 + AluY SINE Alu 1 297 -14 2502 53 3 25 chr6 31781801 31781982 -157497572 + AluSp SINE Alu 138 311 -2 847 167 72 85 chr6 31781982 31782057 -157497497 + MER33 DNA MER1_type 234 302 -22 1312 151 43 108 chr6 31783000 31783325 -157496229 + AluJb SINE Alu 1 304 -8 216 163 0 0 chr6 31783678 31783721 -157495833 + (TA)n Simple_repeat Simple_repeat 1 43 0 315 0 0 0 chr6 31783723 31783758 -157495796 + (TG)n Simple_repeat Simple_repeat 2 36 0 210 118 0 0 chr6 31783793 31783827 -157495727 + (A)n Simple_repeat Simple_repeat 1 34 0 647 27 0 0 chr6 31783920 31783993 -157495561 - tRNA-Phe-TTC tRNA tRNA -3 73 1 1679 112 97 12 chr6 31784535 31784827 -157494727 - AluSg SINE Alu 0 314 1 1986 94 63 18 chr6 31784892 31785178 -157494376 + AluSx SINE Alu 1 299 -13 468 195 71 0 chr6 31785216 31785329 -157494225 - AluSc SINE Alu -12 297 177 2310 81 0 0 chr6 31785599 31785882 -157493672 + AluSq SINE Alu 1 283 -30 33 0 0 0 chr6 31785921 31785954 -157493600 + AT_rich Low_complexity Low_complexity 1 33 0 432 194 0 0 chr6 31788159 31788231 -157491323 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1278 244 144 59 chr6 31788539 31788994 -157490560 + L1MC4a LINE L1 6098 6636 -1172 1950 128 21 0 chr6 31788994 31789282 -157490272 + AluSx SINE Alu 1 294 -18 1278 244 144 59 chr6 31789282 31789534 -157490020 + L1MC4a LINE L1 6636 6865 -943 2087 112 3 0 chr6 31789536 31789831 -157489723 + AluSx SINE Alu 8 303 -9 454 231 0 8 chr6 31789891 31790010 -157489544 + L1MC4 LINE L1 7915 8042 0 468 216 43 35 chr6 31791805 31791921 -157487633 - MER5A DNA MER1_type 0 189 73 575 69 0 0 chr6 31793322 31793394 -157486160 - tRNA-Ala-GCG tRNA tRNA -3 72 1 781 173 7 0 chr6 31793875 31794014 -157485540 + FRAM SINE Alu 1 137 -39 383 123 0 27 chr6 31794014 31794087 -157485467 + (GGGGA)n Simple_repeat Simple_repeat 5 75 0 778 178 35 96 chr6 31795238 31795365 -157484189 + MER33 DNA MER1_type 1 123 -2501 1827 127 13 47 chr6 31795365 31795665 -157483889 - AluSg SINE Alu -20 290 1 778 178 35 96 chr6 31795665 31795777 -157483777 + MER33 DNA MER1_type 123 240 -2384 1314 109 20 5 chr6 31795777 31795979 -157483575 + L1PA16 LINE L1 5952 6156 -10 1939 143 0 0 chr6 31795979 31796282 -157483272 - AluSx SINE Alu 0 308 6 778 178 35 96 chr6 31796282 31796401 -157483153 + MER33 DNA MER1_type 238 352 -11 2252 118 3 0 chr6 31796790 31796964 -157482590 - AluSq SINE Alu -7 306 129 321 26 0 0 chr6 31796964 31797002 -157482552 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2252 118 3 0 chr6 31797002 31797132 -157482422 - AluSq SINE Alu -184 129 1 195 114 0 0 chr6 31797413 31797448 -157482106 + (A)n Simple_repeat Simple_repeat 1 35 0 2214 133 0 0 chr6 31797573 31797881 -157481673 + AluSg SINE Alu 1 308 -2 1569 161 7 56 chr6 31798015 31798319 -157481235 + AluJb SINE Alu 6 294 -18 2460 58 3 0 chr6 31798322 31798614 -157480940 + AluY SINE Alu 1 293 -18 2280 58 41 7 chr6 31798676 31798968 -157480586 - AluY SINE Alu -9 302 1 203 133 0 0 chr6 31799260 31799290 -157480264 + (CATA)n Simple_repeat Simple_repeat 2 31 0 619 27 0 14 chr6 31799403 31799477 -157480077 - tRNA-Phe-TTC tRNA tRNA -3 73 1 2259 105 7 0 chr6 31799691 31799995 -157479559 + AluSx SINE Alu 1 306 -6 561 145 30 6 chr6 31800372 31800538 -157479016 + (TA)n Simple_repeat Simple_repeat 1 170 0 205 61 20 61 chr6 31800537 31800586 -157478968 + (GA)n Simple_repeat Simple_repeat 2 48 0 * 433 186 62 0 chr6 31800586 31800683 -157478871 - AluSc SINE Alu -30 279 177 2109 117 3 3 chr6 31802870 31803182 -157476372 + AluSp SINE Alu 1 312 0 308 278 0 0 chr6 31803506 31803578 -157475976 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1506 258 154 40 chr6 31803801 31804575 -157474979 + L1MC4a LINE L1 6234 7095 -713 532 72 0 4 chr6 31804575 31804797 -157474757 + AluSp SINE Alu 1 309 0 1526 221 110 27 chr6 31804798 31805287 -157474267 + L1MC4 LINE L1 7389 7918 -124 204 40 0 0 chr6 31805292 31805317 -157474237 + (CA)n Simple_repeat Simple_repeat 2 26 0 2098 123 3 3 chr6 31805496 31805797 -157473757 - AluSp SINE Alu -12 301 1 416 235 0 0 chr6 31805797 31805878 -157473676 - Tigger3(Golem) DNA MER2_type -2948 81 1 599 143 9 9 chr6 31805879 31805984 -157473570 + MLT1D LTR MaLR 398 502 -3 11850 51 0 38 chr6 31806072 31808337 -157471217 + L1PA6 LINE L1 3923 6154 0 2456 66 0 35 chr6 31808353 31808671 -157470883 + AluY SINE Alu 1 307 -4 21 36 0 0 chr6 31808927 31808955 -157470599 + AT_rich Low_complexity Low_complexity 1 28 0 2057 133 3 0 chr6 31808958 31809259 -157470295 + AluSx SINE Alu 1 302 -10 21 36 0 0 chr6 31809299 31809327 -157470227 + AT_rich Low_complexity Low_complexity 1 28 0 2520 53 0 37 chr6 31810577 31810900 -157468654 + AluY SINE Alu 1 311 0 1281 116 0 0 chr6 31811715 31811888 -157467666 - AluSg/x SINE Alu -12 300 128 2349 76 20 3 chr6 31812933 31813234 -157466320 + AluSg SINE Alu 1 306 -4 301 234 224 0 chr6 31813469 31813576 -157465978 - MER5A DNA MER1_type -14 175 45 2168 66 40 23 chr6 31813914 31814215 -157465339 + AluY SINE Alu 1 306 -5 508 97 0 0 chr6 31814538 31814610 -157464944 - tRNA-Ala-GCG tRNA tRNA -3 72 1 515 293 137 35 chr6 31815614 31816658 -157462896 + L1MB2 LINE L1 2683 3832 -2314 1254 151 0 5 chr6 31816693 31816911 -157462643 + L1MA4A LINE L1 5852 6068 -235 1149 136 0 0 chr6 31816911 31817080 -157462474 - AluSg/x SINE Alu -7 305 137 1035 74 40 7 chr6 31817081 31817230 -157462324 + L1MA4A LINE L1 6070 6223 -80 841 278 64 40 chr6 31817249 31817452 -157462102 + L1MC/D LINE L1 5468 5665 -2143 1856 165 0 23 chr6 31817452 31817780 -157461774 + AluSx SINE Alu 1 312 0 841 278 64 40 chr6 31817780 31817838 -157461716 + L1MC/D LINE L1 5665 5720 -2088 1625 101 167 8 chr6 31817838 31818096 -157461458 + AluSc SINE Alu 1 299 0 841 278 64 40 chr6 31818096 31818179 -157461375 + L1MC/D LINE L1 5720 5821 -1987 1185 164 15 5 chr6 31818197 31818398 -157461156 + LTR48B LTR ERV1 442 644 0 1907 318 59 34 chr6 31818407 31818645 -157460909 + L1M4b LINE L1 469 700 -6159 2374 102 0 6 chr6 31818645 31818958 -157460596 + AluSx SINE Alu 1 311 -1 1907 318 59 34 chr6 31818958 31819478 -157460076 + L1M4b LINE L1 700 1246 -5613 6357 184 23 40 chr6 31819487 31819599 -157459955 + L1MB2 LINE L1 3851 3963 -2220 2341 86 0 10 chr6 31819599 31819913 -157459641 + AluY SINE Alu 1 311 0 6357 184 23 40 chr6 31819913 31820117 -157459437 + L1MB2 LINE L1 3963 4169 -2014 1662 164 17 7 chr6 31820117 31820416 -157459138 + AluJb SINE Alu 7 308 -4 6357 184 23 40 chr6 31820416 31821058 -157458496 + L1MB2 LINE L1 4169 4820 -1363 2149 107 0 27 chr6 31821058 31821356 -157458198 + AluSg SINE Alu 1 290 -20 6357 184 23 40 chr6 31821356 31822165 -157457389 + L1MB2 LINE L1 4820 5589 -594 225 94 0 0 chr6 31822171 31822203 -157457351 + (TA)n Simple_repeat Simple_repeat 1 32 0 3134 143 54 17 chr6 31822206 31822966 -157456588 + MER21A LTR ERV1 20 931 0 2819 168 40 18 chr6 31822970 31823525 -157456029 + L1MB2 LINE L1 5587 6153 -18 1879 137 20 7 chr6 31823575 31823867 -157455687 + AluSx SINE Alu 1 296 -16 878 263 57 9 chr6 31823871 31824221 -157455333 + L1 LINE L1 2945 3311 -2835 1873 142 59 0 chr6 31824225 31824513 -157455041 + AluSg SINE Alu 5 309 -1 40294 76 5 9 chr6 31824547 31826002 -157453552 + L1PA5 LINE L1 12 1470 -4684 2538 68 0 0 chr6 31826002 31826312 -157453242 + AluY SINE Alu 1 310 -1 40294 76 5 9 chr6 31826312 31831018 -157448536 + L1PA5 LINE L1 1470 6152 -2 2128 128 0 3 chr6 31831109 31831405 -157448149 - AluSx SINE Alu -17 295 1 381 271 53 79 chr6 31831760 31831907 -157447647 - L1MEd LINE L1 -4929 1190 1041 2213 112 3 0 chr6 31831907 31832201 -157447353 - AluY SINE Alu -15 296 2 381 271 53 79 chr6 31832201 31832507 -157447047 - L1MEd LINE L1 -5078 1041 749 403 71 24 36 chr6 31832508 31832592 -157446962 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 323 322 86 39 chr6 31832595 31832828 -157446726 - L1MEd LINE L1 -5359 760 517 2734 125 7 40 chr6 31833325 31833604 -157445950 + MER57B LTR ERV1 1 261 -173 2200 95 0 33 chr6 31833604 31833910 -157445644 - AluSg SINE Alu -14 296 1 2734 125 7 40 chr6 31833910 31834079 -157445475 + MER57B LTR ERV1 261 434 0 2419 70 7 0 chr6 31834238 31834536 -157445018 + AluSp SINE Alu 1 300 -13 24 0 0 0 chr6 31835094 31835118 -157444436 + AT_rich Low_complexity Low_complexity 1 24 0 1755 186 32 6 chr6 31835216 31835555 -157443999 - MER7A DNA MER2_type 0 346 1 566 197 17 26 chr6 31836335 31836452 -157443102 + MER3 DNA MER1_type 2 117 -92 3823 132 60 50 chr6 31836669 31837353 -157442201 + LTR8 LTR ERV1 1 691 0 535 153 0 0 chr6 31838214 31838299 -157441255 + MER50 LTR ERV1 145 229 -505 * 1438 162 18 42 chr6 31838293 31838577 -157440977 + MER50 LTR ERV1 433 709 -25 1981 102 0 62 chr6 31838864 31839186 -157440368 + AluSx SINE Alu 1 302 -10 508 97 0 0 chr6 31839779 31839851 -157439703 - tRNA-Ala-GCG tRNA tRNA -3 72 1 858 221 75 29 chr6 31840992 31841230 -157438324 + MER39 LTR ERV1 288 536 -171 1398 177 108 23 chr6 31841230 31841581 -157437973 - MER6 DNA MER2_type -1 864 484 7320 151 150 30 chr6 31841585 31843098 -157436456 - pTR5 LTR ERV1 0 2438 744 1299 213 28 32 chr6 31843098 31843326 -157436228 - MER6 DNA MER2_type -392 473 246 180 77 0 0 chr6 31843326 31843352 -157436202 + (CA)n Simple_repeat Simple_repeat 1 26 0 1299 213 28 32 chr6 31843352 31843544 -157436010 - MER6 DNA MER2_type -619 246 1 533 239 43 25 chr6 31843549 31843627 -157435927 + MER39 LTR ERV1 537 612 -95 2362 103 3 3 chr6 31843627 31843937 -157435617 - AluSp SINE Alu -3 310 1 533 239 43 25 chr6 31843937 31844021 -157435533 + MER39 LTR ERV1 612 702 -5 247 143 0 0 chr6 31844185 31844220 -157435334 - 7SK RNA RNA -158 35 1 205 281 0 0 chr6 31844231 31844288 -157435266 + MER5B DNA MER1_type 122 178 0 2496 126 62 3 chr6 31844367 31844755 -157434799 - LTR57 LTR ERVL 0 411 1 9017 135 20 20 chr6 31844755 31845416 -157434138 - LTR57-int LTR ERVL 0 5343 4683 2482 70 0 7 chr6 31845416 31845717 -157433837 - AluY SINE Alu -12 299 1 9017 135 20 20 chr6 31845717 31846389 -157433165 - LTR57-int LTR ERVL -660 4683 4007 2317 113 0 0 chr6 31846389 31846690 -157432864 - AluSx SINE Alu -11 301 1 9017 135 20 20 chr6 31846690 31846728 -157432826 - LTR57-int LTR ERVL -1335 4008 3971 788 153 0 0 chr6 31846716 31846834 -157432720 - LTR57-int LTR ERVL -2176 3167 3050 * 7614 128 36 11 chr6 31846825 31847962 -157431592 - LTR57-int LTR ERVL -2573 2770 1605 4064 175 31 68 chr6 31847972 31849248 -157430306 - pTR5 LTR ERV1 -143 2295 746 10238 109 28 35 chr6 31849248 31850043 -157429511 - LTR57-int LTR ERVL -3734 1609 810 2241 115 0 3 chr6 31850043 31850355 -157429199 + AluSq SINE Alu 1 311 -2 10238 109 28 35 chr6 31850355 31850661 -157428893 - LTR57-int LTR ERVL -4533 810 503 2622 60 33 0 chr6 31850661 31850994 -157428560 - LTR14A LTR ERVK 0 344 1 1934 97 86 0 chr6 31851002 31851271 -157428283 + AluSg SINE Alu 1 292 -18 10238 109 28 35 chr6 31851271 31851779 -157427775 - LTR57-int LTR ERVL -4847 496 1 2517 134 32 29 chr6 31851779 31851964 -157427590 - LTR57 LTR ERVL 0 411 228 2038 121 13 0 chr6 31851964 31852262 -157427292 - AluSx SINE Alu -10 302 1 2517 134 32 29 chr6 31852262 31852485 -157427069 - LTR57 LTR ERVL -183 228 2 675 225 67 11 chr6 31852682 31852860 -157426694 - MER5A DNA MER1_type 0 189 2 2255 95 0 52 chr6 31853454 31853780 -157425774 + AluSq SINE Alu 1 309 -4 189 0 0 0 chr6 31854071 31854092 -157425462 + (CA)n Simple_repeat Simple_repeat 2 22 0 470 105 13 13 chr6 31854281 31854357 -157425197 + AluJ/FRAM SINE Alu 226 301 -11 312 260 42 0 chr6 31855505 31855601 -157423953 - L1ME4a LINE L1 -199 5922 5823 1861 115 25 7 chr6 31855686 31855964 -157423590 + AluJb SINE Alu 5 287 -25 2033 117 16 13 chr6 31855972 31856280 -157423274 + AluSx SINE Alu 1 309 -3 578 56 0 0 chr6 31857482 31857553 -157422001 + tRNA-Arg-CGA tRNA tRNA 1 71 -5 229 294 56 24 chr6 31857657 31857783 -157421771 - L2 LINE L2 -18 3295 3166 272 252 107 29 chr6 31858615 31858718 -157420836 - MIR SINE MIR -93 169 59 2320 72 0 33 chr6 31858839 31859143 -157420411 - AluSc SINE Alu -15 294 1 1257 159 4 53 chr6 31859178 31859405 -157420149 - AluJo SINE Alu -83 229 14 2539 202 46 70 chr6 31859415 31860272 -157419282 - L1MB4 LINE L1 -216 5964 5133 584 185 74 0 chr6 31860276 31860384 -157419170 - AluSg/x SINE Alu -18 294 179 3726 193 68 19 chr6 31860385 31861500 -157418054 - pTR5 LTR ERV1 -1 2605 1524 5314 139 48 53 chr6 31861505 31862525 -157417029 + pTR5 LTR ERV1 1419 2433 -5 1887 112 73 21 chr6 31862837 31863124 -157416430 + AluY SINE Alu 1 302 -9 2173 87 30 7 chr6 31863226 31863525 -157416029 + AluSg SINE Alu 1 306 -4 1915 139 13 28 chr6 31864204 31864521 -157415033 - AluJb SINE Alu 0 312 1 1649 172 27 30 chr6 31866054 31866351 -157413203 + AluJb SINE Alu 3 298 -14 355 289 191 3 chr6 31866495 31866678 -157412876 + MIR SINE MIR 49 262 0 2471 61 3 0 chr6 31867287 31867582 -157411972 + AluY SINE Alu 1 296 -15 1753 106 24 0 chr6 31867670 31867916 -157411638 + AluSx SINE Alu 1 252 -60 288 0 0 0 chr6 31867919 31867951 -157411603 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 1665 126 0 8 chr6 31867963 31868202 -157411352 - AluSx SINE Alu -44 268 32 639 143 0 19 chr6 31868303 31868396 -157411158 + FRAM SINE Alu 57 149 -163 270 0 0 0 chr6 31868396 31868426 -157411128 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 639 143 0 19 chr6 31868426 31868437 -157411117 + FRAM SINE Alu 149 159 -17 820 166 112 34 chr6 31868439 31868644 -157410910 + L1MB8 LINE L1 5957 6177 -1 1791 145 0 4 chr6 31869197 31869459 -157410095 + AluSx SINE Alu 32 292 -20 238 36 0 0 chr6 31869459 31869487 -157410067 + (GA)n Simple_repeat Simple_repeat 1 28 0 470 148 0 11 chr6 31869489 31869577 -157409977 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 572 137 0 11 chr6 31869655 31869750 -157409804 - AluJ/FLAM SINE Alu -217 95 2 532 194 46 51 chr6 31870337 31870479 -157409075 - MER87 LTR ERV1 -1 555 396 2432 99 0 0 chr6 31870507 31870819 -157408735 - AluSx SINE Alu 0 312 1 2281 70 3 34 chr6 31870830 31871171 -157408383 - AluY SINE Alu 0 332 1 2544 40 10 3 chr6 31871911 31872212 -157407342 - AluY SINE Alu -6 305 3 533 9 9 224 chr6 31872312 31872419 -157407135 - tRNA-Leu-TTG tRNA tRNA -2 84 1 180 0 0 0 chr6 31872662 31872682 -157406872 + (T)n Simple_repeat Simple_repeat 1 20 0 184 170 0 85 chr6 31873353 31873400 -157406154 + L2 LINE L2 3253 3295 -18 277 275 233 13 chr6 31873825 31874199 -157405355 - L1ME4a LINE L1 -49 6072 5617 2482 69 3 0 chr6 31874199 31874502 -157405052 - AluSg SINE Alu -6 304 1 1996 125 20 14 chr6 31874521 31874818 -157404736 - AluSx SINE Alu -12 300 2 2131 105 0 14 chr6 31875241 31875535 -157404019 - AluSg SINE Alu -20 290 1 2121 101 42 0 chr6 31875598 31875884 -157403670 - AluSx SINE Alu -12 300 3 25 75 0 0 chr6 31875931 31875984 -157403570 + AT_rich Low_complexity Low_complexity 1 53 0 268 262 62 41 chr6 31876223 31876368 -157403186 + L1MC5 LINE L1 7754 7901 -60 847 201 0 0 chr6 31876784 31876933 -157402621 + FRAM SINE Alu 1 146 -30 545 273 71 0 chr6 31878114 31878268 -157401286 + MIR SINE MIR 48 212 -50 2283 85 3 3 chr6 31878580 31878873 -157400681 + AluSg SINE Alu 1 293 -17 1623 191 18 7 chr6 31881021 31881299 -157398255 - AluJo SINE Alu -30 282 2 554 288 42 12 chr6 31881325 31881602 -157397952 - MER46C DNA MER2_type 0 338 1 648 201 167 14 chr6 31881643 31881787 -157397767 - FRAM SINE Alu 0 166 1 1475 151 97 32 chr6 31882039 31882317 -157397237 + AluJo SINE Alu 12 307 -5 29 0 0 0 chr6 31882317 31882346 -157397208 + AT_rich Low_complexity Low_complexity 1 29 0 191 227 61 83 chr6 31882554 31882686 -157396868 + L2 LINE L2 3185 3313 0 471 282 168 5 chr6 31884255 31884464 -157395090 - MIR SINE MIR -5 257 15 2440 65 10 0 chr6 31885203 31885497 -157394057 - AluSp SINE Alu -16 297 1 361 204 70 34 chr6 31885905 31886035 -157393519 + MLT1J LTR MaLR 1 173 -315 803 153 0 22 chr6 31886089 31886226 -157393328 + FLAM_C SINE Alu 10 143 0 455 294 101 55 chr6 31886278 31886415 -157393139 + MLT1J LTR MaLR 274 426 -85 2280 121 0 0 chr6 31886415 31886720 -157392834 - AluSx SINE Alu -7 305 1 455 294 101 55 chr6 31886720 31886800 -157392754 + MLT1J LTR MaLR 426 501 -10 316 159 79 0 chr6 31888134 31888197 -157391357 - L1MC4 LINE L1 0 8042 7975 2198 109 0 3 chr6 31888197 31888491 -157391063 - AluSq SINE Alu -11 302 10 234 88 0 0 chr6 31888497 31888531 -157391023 - L1MC4a LINE L1 -1869 5939 5906 329 87 0 0 chr6 31888553 31888599 -157390955 + AluSp/q SINE Alu 254 299 -4 712 264 43 22 chr6 31888599 31888875 -157390679 - L1MC4a LINE L1 -1893 5915 5634 702 211 33 17 chr6 31888884 31889064 -157390490 - L1MA4 LINE L1 -5 6295 6113 2501 67 3 0 chr6 31889064 31889361 -157390193 + AluSp SINE Alu 1 298 -15 251 157 20 0 chr6 31889361 31889412 -157390142 + (TA)n Simple_repeat Simple_repeat 1 52 0 638 150 53 0 chr6 31889412 31889545 -157390009 - L1MA4 LINE L1 -175 6125 5986 1146 245 50 18 chr6 31889586 31889925 -157389629 - L1MC4a LINE L1 -2204 5604 5255 746 124 0 0 chr6 31890114 31890219 -157389335 - FRAM SINE Alu -14 162 58 2243 114 3 0 chr6 31890228 31890525 -157389029 - AluSx SINE Alu -14 298 1 608 154 24 57 chr6 31890667 31890790 -157388764 + L1PB4 LINE L1 6000 6118 -38 256 282 36 49 chr6 31890844 31891228 -157388326 - L1MC4a LINE L1 -1617 4529 4034 222 37 0 0 chr6 31891384 31891411 -157388143 + (A)n Simple_repeat Simple_repeat 1 27 0 2105 119 20 10 chr6 31891417 31891710 -157387844 + AluSx SINE Alu 1 296 -16 558 192 29 0 chr6 31891731 31891835 -157387719 + U6 snRNA snRNA 1 107 0 803 116 70 14 chr6 31891842 31892005 -157387549 + L1MB5 LINE L1 5694 5838 -336 835 151 0 0 chr6 31892019 31892138 -157387416 - AluSg/x SINE Alu -24 288 170 1066 213 86 43 chr6 31892238 31892283 -157387271 + L1MB5 LINE L1 5837 5879 -295 2368 91 3 0 chr6 31892283 31892579 -157386975 + AluSp SINE Alu 1 297 -16 1066 213 86 43 chr6 31892579 31892857 -157386697 + L1MB5 LINE L1 5879 6174 0 2025 162 0 6 chr6 31892872 31893186 -157386368 + AluJb SINE Alu 1 312 0 217 341 49 0 chr6 31893197 31893279 -157386275 + L2 LINE L2 1101 1186 -2128 2337 109 0 0 chr6 31893309 31893612 -157385942 + AluSx SINE Alu 1 303 -9 2396 91 10 0 chr6 31893832 31894140 -157385414 - AluSp SINE Alu -2 311 1 342 347 68 9 chr6 31894307 31894529 -157385025 + L2 LINE L2 1760 1994 -1320 186 103 0 0 chr6 31894541 31894570 -157384984 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 2297 96 3 0 chr6 31894612 31894903 -157384651 + AluSg SINE Alu 1 292 -18 260 210 0 16 chr6 31894921 31894983 -157384571 - MER58 DNA MER1_type -125 90 30 2125 123 7 3 chr6 31895017 31895325 -157384229 - AluSg1 SINE Alu 0 309 1 229 295 16 0 chr6 31895407 31895468 -157384086 + L2 LINE L2 3189 3250 -22 319 321 25 31 chr6 31895641 31895803 -157383751 - MIR3 SINE MIR -6 202 42 2111 129 14 0 chr6 31897115 31897410 -157382144 + AluSp SINE Alu 1 299 -14 2167 92 13 3 chr6 31900312 31900615 -157378939 + AluSc SINE Alu 1 306 -3 305 210 50 20 chr6 31900823 31900923 -157378631 + MIR SINE MIR 57 159 -103 454 88 15 0 chr6 31901276 31901344 -157378210 - MER41A LTR ERV1 -87 467 399 356 250 167 0 chr6 31901351 31901435 -157378119 + MER115 DNA AcHobo 50 147 -546 2008 154 0 0 chr6 31901825 31902131 -157377423 + AluSx SINE Alu 1 306 -6 656 180 0 47 chr6 31902293 31902421 -157377133 - FLAM_C SINE Alu -11 122 1 2132 100 4 4 chr6 31902823 31903104 -157376450 + AluSg SINE Alu 6 286 -24 1462 51 0 17 chr6 31903235 31903411 -157376143 - AluY SINE Alu -138 173 1 2138 110 13 3 chr6 31903429 31903728 -157375826 + AluSx SINE Alu 1 302 -10 271 201 82 90 chr6 31903773 31903864 -157375690 + L2 LINE L2 1879 1970 -1344 1870 173 79 35 chr6 31903864 31904293 -157375261 + MER83 LTR ERV1 1 448 0 271 201 82 90 chr6 31904293 31904335 -157375219 + L2 LINE L2 1970 2011 -1303 1904 134 37 7 chr6 31904568 31904866 -157374688 + AluJb SINE Alu 3 309 -3 353 266 152 75 chr6 31904912 31905366 -157374188 + L1MC4a LINE L1 4903 5391 -755 521 306 93 50 chr6 31905369 31905506 -157374048 + L1MC4a LINE L1 5438 5568 -2240 2283 107 3 7 chr6 31905506 31905816 -157373738 + AluSp SINE Alu 1 309 -4 521 306 93 50 chr6 31905816 31906054 -157373500 + L1MC4a LINE L1 5568 5829 -1979 605 138 0 9 chr6 31906056 31906165 -157373389 + (GAA)n Simple_repeat Simple_repeat 1 108 0 589 286 98 19 chr6 31906204 31906470 -157373084 - L2 LINE L2 0 3313 3027 3303 164 64 22 chr6 31906512 31906779 -157372775 + L1MD2 LINE L1 5639 5893 -466 1764 166 3 24 chr6 31906779 31907113 -157372441 - AluSx SINE Alu 0 328 1 3303 164 64 22 chr6 31907113 31907466 -157372088 + L1MD2 LINE L1 5893 6294 -65 1994 150 10 0 chr6 31907466 31907773 -157371781 - AluSx SINE Alu -2 310 1 3303 164 64 22 chr6 31907773 31907841 -157371713 + L1MD2 LINE L1 6294 6358 -1 278 238 29 48 chr6 31907938 31908043 -157371511 - MLT1L LTR MaLR -379 236 134 240 268 0 0 chr6 31908255 31908311 -157371243 - L2 LINE L2 -73 3199 3144 1155 138 0 6 chr6 31908404 31908564 -157370990 + FRAM SINE Alu 1 158 -18 2283 117 3 0 chr6 31908564 31908864 -157370690 + AluSp SINE Alu 1 301 -12 337 309 20 27 chr6 31908886 31909035 -157370519 + MLT1H1 LTR MaLR 95 242 -307 1416 160 69 91 chr6 31909055 31909374 -157370180 - MLT1B LTR MaLR -2 388 77 2043 130 7 0 chr6 31909374 31909658 -157369896 + AluSx SINE Alu 8 293 -19 1416 160 69 91 chr6 31909658 31909713 -157369841 - MLT1B LTR MaLR -313 77 22 348 229 150 29 chr6 31909808 31909948 -157369606 + MLT1H1 LTR MaLR 298 454 -101 198 233 0 0 chr6 31910116 31910159 -157369395 + L3 LINE CR1 1179 1221 -356 848 165 26 104 chr6 31910329 31910371 -157369183 - MSTA LTR MaLR 0 428 384 2022 126 3 14 chr6 31910371 31910683 -157368871 + AluSx SINE Alu 1 312 0 848 165 26 104 chr6 31910683 31910800 -157368754 - MSTA LTR MaLR -44 384 290 1949 143 7 3 chr6 31910800 31911107 -157368447 - AluSq SINE Alu -5 308 1 848 165 26 104 chr6 31911107 31911176 -157368378 - MSTA LTR MaLR -138 290 217 453 132 0 121 chr6 31911181 31911272 -157368282 - MSTA LTR MaLR -348 80 1 800 216 69 53 chr6 31911341 31911586 -157367968 - L1ME3 LINE L1 -4 6158 5910 1317 204 82 29 chr6 31911599 31911942 -157367612 - L1ME3 LINE L1 -418 5744 5384 1313 139 26 92 chr6 31911953 31912226 -157367328 - AluJb SINE Alu -57 255 1 567 257 39 31 chr6 31912226 31912404 -157367150 - L1ME3 LINE L1 -760 5386 5204 2372 88 13 10 chr6 31912404 31912712 -157366842 - AluSc SINE Alu 0 309 1 567 257 39 31 chr6 31912712 31912790 -157366764 - L1ME3 LINE L1 -942 5204 5128 946 155 0 19 chr6 31912820 31912981 -157366573 - FAM SINE Alu -15 170 13 1742 118 93 15 chr6 31913297 31913429 -157366125 - AluSx SINE Alu -21 291 171 2054 109 0 30 chr6 31913429 31913731 -157365823 - AluSc SINE Alu -16 293 1 1742 118 93 15 chr6 31913731 31913868 -157365686 - AluSx SINE Alu -141 171 1 1901 107 44 4 chr6 31914268 31914540 -157365014 - AluSq SINE Alu -30 283 1 2576 235 103 45 chr6 31914568 31915547 -157364007 - HAL1 LINE L1 -342 2165 1055 2198 102 24 0 chr6 31915547 31915842 -157363712 + AluSp SINE Alu 1 302 -11 2576 235 103 45 chr6 31915842 31916152 -157363402 - HAL1 LINE L1 -1452 1055 764 539 9 9 217 chr6 31917033 31917139 -157362415 + tRNA-Leu-TTG tRNA tRNA 1 84 -2 677 0 0 0 chr6 31917581 31917653 -157361901 - tRNA-Gln-CAG tRNA tRNA -3 72 1 357 93 0 0 chr6 31918205 31918259 -157361295 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 458 174 20 0 chr6 31918807 31918905 -157360649 + CT-rich Low_complexity Low_complexity 2 101 0 207 0 0 0 chr6 31918918 31918941 -157360613 + (CTTG)n Simple_repeat Simple_repeat 2 24 0 615 228 29 0 chr6 31918942 31919078 -157360476 - FRAM SINE Alu -39 137 1 575 69 0 0 chr6 31919561 31919633 -157359921 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 468 216 43 35 chr6 31921034 31921150 -157358404 + MER5A DNA MER1_type 73 189 0 1532 121 0 0 chr6 31921960 31922166 -157357388 + AluSg SINE Alu 2 207 -103 4944 177 14 6 chr6 32022166 32023726 -157255828 + L1PB1 LINE L1 4221 5791 -360 537 19 10 146 chr6 32023726 32023931 -157255623 + (TA)n Simple_repeat Simple_repeat 2 178 0 2518 115 0 3 chr6 32023954 32024327 -157255227 + L1PB1 LINE L1 5776 6147 -4 2754 196 0 16 chr6 32024342 32024854 -157254700 + L1 LINE L1 4802 5321 -825 1212 179 61 32 chr6 32024854 32025133 -157254421 + AluJo SINE Alu 1 287 -25 215 30 0 30 chr6 32025133 32025166 -157254388 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 2754 196 0 16 chr6 32025166 32025222 -157254332 + L1 LINE L1 5319 5362 -784 671 105 14 0 chr6 32025247 32025363 -157254191 + L1MA4A LINE L1 5315 5440 -860 640 184 9 0 chr6 32025368 32025482 -157254072 + FLAM_C SINE Alu 5 119 -24 4814 129 28 30 chr6 32025482 32026362 -157253192 + L1MA4A LINE L1 5417 6295 -8 1003 244 156 10 chr6 32026671 32026979 -157252575 + MER69 DNA AcHobo 1 353 -2173 627 254 0 0 chr6 32027367 32027509 -157252045 + MER69 DNA AcHobo 1845 1986 -540 1767 152 7 30 chr6 32027919 32028221 -157251333 + AluJo SINE Alu 1 295 -17 275 198 38 38 chr6 32028699 32028805 -157250749 + L1MDb LINE L1 1134 1239 -5170 * 3511 241 27 8 chr6 32028801 32029578 -157249976 + L1M4 LINE L1 4 795 -5747 1166 199 55 48 chr6 32029578 32029969 -157249585 + MSTB2 LTR MaLR 1 445 -11 3904 225 56 62 chr6 32029975 32030982 -157248572 + L1M4 LINE L1 790 1801 -5024 508 176 0 0 chr6 32030982 32031067 -157248487 + AluJ/FLAM SINE Alu 1 85 -227 3904 225 56 62 chr6 32031067 32032128 -157247426 + L1M4 LINE L1 1801 2952 -3873 647 235 38 92 chr6 32032124 32032216 -157247338 + L1M4 LINE L1 3493 3588 -3056 * 1970 128 3 0 chr6 32032216 32032504 -157247050 + AluSx SINE Alu 1 289 -23 647 235 38 92 chr6 32032504 32032536 -157247018 + L1M4 LINE L1 3588 3620 -3024 213 39 0 0 chr6 32032536 32032562 -157246992 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 647 235 38 92 chr6 32032562 32032866 -157246688 + L1M4 LINE L1 3620 3896 -2748 563 142 45 90 chr6 32032866 32033000 -157246554 + FLAM_A SINE Alu 1 128 -5 647 235 38 92 chr6 32033000 32033045 -157246509 + L1M4 LINE L1 3896 3942 -2702 1649 262 41 82 chr6 32033076 32033254 -157246300 + L1MB2 LINE L1 2785 2969 -3177 1753 184 3 13 chr6 32033254 32033569 -157245985 + AluJo SINE Alu 1 312 0 1649 262 41 82 chr6 32033569 32034507 -157245047 + L1MB2 LINE L1 2969 3856 -2290 311 224 82 0 chr6 32034503 32034589 -157244965 + L1MC4 LINE L1 7315 7502 -493 * 637 250 26 7 chr6 32034605 32034757 -157244797 + L1MC4 LINE L1 7315 7469 -573 280 276 20 20 chr6 32034769 32034867 -157244687 + LTR67 LTR ERVL 460 557 0 183 42 0 0 chr6 32035411 32035435 -157244119 + (TC)n Simple_repeat Simple_repeat 1 24 0 544 165 28 28 chr6 32036593 32036769 -157242785 + GA-rich Low_complexity Low_complexity 2 177 0 2545 40 40 0 chr6 32037852 32038151 -157241403 + AluY SINE Alu 1 311 0 279 0 0 0 chr6 32038154 32038185 -157241369 + (TA)n Simple_repeat Simple_repeat 2 32 0 185 94 31 0 chr6 32038466 32038498 -157241056 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1876 201 37 33 chr6 32038644 32039131 -157240423 + L1MB2 LINE L1 4823 5311 -835 8571 144 36 28 chr6 32039131 32041671 -157237883 + L1MA8 LINE L1 3726 6287 -4 3707 191 35 29 chr6 32041665 32042501 -157237053 + L1MB2 LINE L1 5296 6136 -35 * 3050 218 179 46 chr6 32042496 32043452 -157236102 - MLT-int LTR MaLR -139 1596 514 * 1606 137 82 63 chr6 32043819 32044199 -157235355 - MLT1B LTR MaLR -3 387 1 1067 183 19 33 chr6 32044274 32044487 -157235067 - MER20 DNA MER1_type 0 219 10 379 327 151 29 chr6 32047355 32047912 -157231642 - L2 LINE L2 -1172 2142 1518 334 365 39 6 chr6 32048376 32048532 -157231022 + L2 LINE L2 2924 3084 -188 924 180 148 7 chr6 32050931 32051215 -157228339 - MER33 DNA MER1_type 0 324 1 215 311 87 19 chr6 32051215 32051318 -157228236 + L2 LINE L2 3163 3272 0 457 329 83 19 chr6 32052278 32052603 -157226951 + L1MEd LINE L1 868 1213 -4906 1669 118 36 69 chr6 32053132 32053465 -157226089 + AluSx SINE Alu 1 312 0 376 277 76 66 chr6 32053533 32053938 -157225616 + MLT1J2 LTR MaLR 1 445 -5 349 303 113 22 chr6 32053942 32054312 -157225242 + L1MEd LINE L1 2139 2542 -3587 1002 163 0 6 chr6 32054316 32054482 -157225072 + FRAM SINE Alu 1 165 -11 217 309 49 0 chr6 32054907 32054988 -157224566 - L2 LINE L2 -1 3312 3228 233 331 41 41 chr6 32055134 32055279 -157224275 + MER5A DNA MER1_type 20 164 -25 212 326 35 42 chr6 32055150 32055294 -157224260 - MER5A DNA MER1_type -28 161 19 * 203 0 0 36 chr6 32055400 32055428 -157224126 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 336 143 127 0 chr6 32055451 32055514 -157224040 - LTR33 LTR ERVL -364 157 87 26 30 0 0 chr6 32055670 32055703 -157223851 + AT_rich Low_complexity Low_complexity 1 33 0 221 218 19 100 chr6 32059810 32059870 -157219684 + MER5B DNA MER1_type 5 59 -130 1817 147 0 11 chr6 32059870 32060175 -157219379 + AluJo SINE Alu 1 302 0 221 218 19 100 chr6 32060175 32060241 -157219313 + MER5B DNA MER1_type 59 129 -60 2069 127 3 0 chr6 32060254 32060538 -157219016 - AluSc SINE Alu -24 285 1 7324 54 8 43 chr6 32060989 32061619 -157217935 + SVA Other Other 2 1386 -756 7324 57 8 64 chr6 32061619 32062665 -157216889 + SVA Other Other 400 1386 0 265 328 39 8 chr6 32062920 32063048 -157216506 - L2 LINE L2 -1105 2209 2078 342 374 50 23 chr6 32063147 32063449 -157216105 + L3 LINE CR1 917 1226 -351 1055 58 29 0 chr6 32064959 32065096 -157214458 + HERVK22 LTR ERVK 4226 4366 -2471 * 52314 87 3 5 chr6 32065093 32071915 -157207639 - HERVK22 LTR ERVK -29 6808 3 1931 161 108 50 chr6 32071917 32072382 -157207172 - LTR22B LTR ERVK 0 492 1 7192 185 28 21 chr6 32072382 32073947 -157205607 + L1 LINE L1 3242 4817 -1329 1417 229 22 11 chr6 32073962 32074333 -157205221 + L1MA4 LINE L1 6 380 -6483 * 4275 69 42 0 chr6 32074319 32074871 -157204683 - THE1B-int LTR MaLR -1005 575 1 2173 121 25 27 chr6 32074871 32075236 -157204318 - THE1B LTR MaLR 0 364 1 10018 200 7 42 chr6 32075236 32075592 -157203962 + L1MA4 LINE L1 3337 3704 -3158 2419 91 13 0 chr6 32075592 32075900 -157203654 + AluSq SINE Alu 1 312 -1 10018 200 7 42 chr6 32075900 32077068 -157202486 + L1MA4 LINE L1 3704 4746 -2116 7174 22 0 0 chr6 32077068 32077871 -157201683 + L1PA3 LINE L1 5346 6153 -2 10018 200 7 42 chr6 32077871 32078772 -157200782 + L1MA4 LINE L1 4746 5677 -1185 6044 105 21 5 chr6 32178772 32179726 -157099828 + L1MA4 LINE L1 6048 7016 0 848 198 112 40 chr6 32179732 32180010 -157099544 + Charlie4a DNA MER1_type 32 329 -179 1070 107 143 36 chr6 32180100 32180324 -157099230 - MER44D DNA MER2_type -91 518 1 483 184 29 10 chr6 32180343 32180446 -157099108 + Charlie4a DNA MER1_type 404 508 0 221 372 69 40 chr6 32180477 32180751 -157098803 + L2 LINE L2 2018 2299 -1015 770 221 82 24 chr6 32180779 32180848 -157098706 + MIR SINE MIR 33 97 -165 1562 206 61 16 chr6 32180848 32181020 -157098534 + MSTD LTR MaLR 1 164 -232 2354 78 0 0 chr6 32181020 32181329 -157098225 + AluY SINE Alu 1 309 0 1562 206 61 16 chr6 32181329 32181533 -157098021 + MSTD LTR MaLR 164 395 -1 770 221 82 24 chr6 32181533 32181671 -157097883 + MIR SINE MIR 97 252 -10 215 311 137 47 chr6 32181751 32181941 -157097613 + L2 LINE L2 2684 2890 -424 436 338 121 59 chr6 32182137 32182674 -157096880 - L2 LINE L2 -19 3253 2678 750 140 75 81 chr6 32182700 32182731 -157096823 + MER3 DNA MER1_type 1 31 -178 2211 105 10 0 chr6 32182731 32183026 -157096528 + AluSg SINE Alu 1 298 -12 750 140 75 81 chr6 32183026 32183180 -157096374 + MER3 DNA MER1_type 31 185 -24 668 335 155 26 chr6 32183278 32183937 -157095617 - L2 LINE L2 -825 2489 1746 204 167 28 0 chr6 32187318 32187364 -157092190 + G-rich Low_complexity Low_complexity 5 32 0 23 0 0 0 chr6 32191668 32191691 -157087863 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr6 32191744 32191771 -157087783 + (TG)n Simple_repeat Simple_repeat 1 27 0 255 133 0 0 chr6 32194361 32194406 -157085148 + (GGA)n Simple_repeat Simple_repeat 2 46 0 458 242 75 38 chr6 32194931 32194966 -157084588 - MER58A DNA MER1_type -2219 201 169 1675 141 93 13 chr6 32194966 32195278 -157084276 - MER1B DNA MER1_type 0 337 1 458 242 75 38 chr6 32195278 32195428 -157084126 - MER58A DNA MER1_type -2251 169 9 1877 97 53 81 chr6 32195513 32195834 -157083720 - AluSx SINE Alu 0 312 1 569 196 122 20 chr6 32195892 32196040 -157083514 + Tigger1 DNA MER2_type 1 163 -2255 1723 57 102 0 chr6 32198202 32198448 -157081106 + AluY SINE Alu 21 291 -20 203 336 173 0 chr6 32198847 32198951 -157080603 - MER5B DNA MER1_type -54 124 3 935 242 35 27 chr6 32200708 32200964 -157078590 - MIR SINE MIR -2 260 3 212 382 0 30 chr6 32201068 32201199 -157078355 - L2 LINE L2 -683 2631 2505 905 174 12 0 chr6 32201679 32201840 -157077714 - FRAM SINE Alu -13 163 1 1633 102 91 4 chr6 32202069 32202333 -157077221 - THE1C LTR MaLR 0 375 89 1955 126 72 13 chr6 32202458 32202776 -157076778 - MER1B DNA MER1_type 0 337 1 483 200 142 0 chr6 32202784 32202904 -157076650 - MIR SINE MIR -6 256 120 1785 138 0 21 chr6 32203792 32204082 -157075472 - AluSx SINE Alu -24 288 5 389 308 107 18 chr6 32204931 32205100 -157074454 - MIR SINE MIR -6 256 73 261 146 0 0 chr6 32205261 32205309 -157074245 + (CA)n Simple_repeat Simple_repeat 2 49 0 2038 109 0 0 chr6 32205331 32205645 -157073909 - AluSx SINE Alu 0 314 1 9323 160 21 28 chr6 32205650 32205899 -157073655 - L1MA4A LINE L1 -1 6302 6053 2626 120 15 5 chr6 32205899 32206298 -157073256 + MER57A LTR ERV1 1 403 0 9323 160 21 28 chr6 32206298 32206778 -157072776 - L1MA4A LINE L1 -250 6053 5571 2133 60 71 0 chr6 32206778 32207061 -157072493 + AluSp SINE Alu 1 303 -10 9323 160 21 28 chr6 32207061 32207538 -157072016 - L1MA4A LINE L1 -732 5571 5093 2112 120 3 3 chr6 32207538 32207847 -157071707 - AluSg SINE Alu -1 309 1 9323 160 21 28 chr6 32207847 32208762 -157070792 - L1MA4A LINE L1 -1210 5093 4059 1822 136 0 41 chr6 32208762 32209078 -157070476 - AluSx SINE Alu -9 303 1 9323 160 21 28 chr6 32209078 32209753 -157069801 - L1MA4A LINE L1 -2244 4059 3381 704 200 36 0 chr6 32209753 32209918 -157069636 - L1MA4A LINE L1 -2687 3459 3289 2645 35 0 0 chr6 32210399 32210709 -157068845 - AluY SINE Alu -1 310 1 200 271 0 0 chr6 32210804 32210874 -157068680 + (TTATA)n Simple_repeat Simple_repeat 1 70 0 27 0 8 0 chr6 32211136 32211204 -157068350 + AT_rich Low_complexity Low_complexity 1 27 0 2261 84 3 0 chr6 32211211 32211508 -157068046 + AluSq SINE Alu 1 298 -15 252 0 0 0 chr6 32211602 32211630 -157067924 + (CA)n Simple_repeat Simple_repeat 2 29 0 259 33 0 0 chr6 32211696 32211726 -157067828 + MSTD LTR MaLR 1 30 -366 344 263 106 55 chr6 32211727 32211944 -157067610 - L1MC4a LINE L1 -1160 6648 6421 1159 193 93 135 chr6 32211956 32212364 -157067190 + MSTD LTR MaLR 37 428 0 477 275 93 35 chr6 32212365 32213229 -157066325 - L1MC5 LINE L1 -99 7862 7102 1261 268 39 8 chr6 32213378 32213740 -157065814 - L1MC4 LINE L1 -974 7068 6696 24 32 0 0 chr6 32213776 32213807 -157065747 + AT_rich Low_complexity Low_complexity 1 31 0 1996 126 0 10 chr6 32213846 32214155 -157065399 - AluSg SINE Alu -4 306 1 841 181 0 92 chr6 32214320 32214577 -157064977 + AluJo SINE Alu 86 312 0 558 211 106 120 chr6 32214760 32214835 -157064719 - L1MC4a LINE L1 -1758 6050 5975 1673 193 3 0 chr6 32214835 32215131 -157064423 - AluJo SINE Alu -15 297 1 558 211 106 120 chr6 32215131 32215288 -157064266 - L1MC4a LINE L1 -1833 5975 5822 1332 102 62 33 chr6 32215288 32215471 -157064083 - L1MA4A LINE L1 0 6303 6110 464 0 0 18 chr6 32215471 32215528 -157064026 + (TA)n Simple_repeat Simple_repeat 2 57 0 1332 102 62 33 chr6 32215528 32215588 -157063966 - L1MA4A LINE L1 -193 6110 6053 558 211 106 120 chr6 32215588 32215704 -157063850 - L1MC4a LINE L1 -1986 5822 5706 1966 101 0 0 chr6 32215753 32216020 -157063534 + AluSg SINE Alu 35 301 -9 198 310 75 40 chr6 32216079 32216253 -157063301 + MIR SINE MIR 68 247 -15 189 291 0 18 chr6 32216411 32216466 -157063088 - MIR SINE MIR -10 252 199 224 340 76 21 chr6 32216989 32217133 -157062421 - L2 LINE L2 -422 2892 2741 501 308 138 0 chr6 32217363 32217558 -157061996 + MIR SINE MIR 3 224 -38 453 289 71 36 chr6 32218443 32218696 -157060858 - L2 LINE L2 -86 3186 2925 2244 109 0 0 chr6 32218772 32219084 -157060470 + AluSx SINE Alu 1 312 0 23 0 0 0 chr6 32223518 32223541 -157056013 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr6 32223594 32223621 -157055933 + (TG)n Simple_repeat Simple_repeat 1 27 0 255 133 0 0 chr6 32226211 32226256 -157053298 + (GGA)n Simple_repeat Simple_repeat 2 46 0 458 242 75 38 chr6 32226781 32226816 -157052738 - MER58A DNA MER1_type -2219 201 169 1675 141 93 13 chr6 32226816 32227128 -157052426 - MER1B DNA MER1_type 0 337 1 458 242 75 38 chr6 32227128 32227278 -157052276 - MER58A DNA MER1_type -2251 169 9 1877 97 53 81 chr6 32227363 32227684 -157051870 - AluSx SINE Alu 0 312 1 569 196 122 20 chr6 32227742 32227890 -157051664 + Tigger1 DNA MER2_type 1 163 -2255 1723 57 102 0 chr6 32230052 32230298 -157049256 + AluY SINE Alu 21 291 -20 203 336 173 0 chr6 32230697 32230801 -157048753 - MER5B DNA MER1_type -54 124 3 935 242 35 27 chr6 32232558 32232814 -157046740 - MIR SINE MIR -2 260 3 212 382 0 30 chr6 32232918 32233049 -157046505 - L2 LINE L2 -683 2631 2505 905 174 12 0 chr6 32233529 32233690 -157045864 - FRAM SINE Alu -13 163 1 1633 102 91 4 chr6 32233919 32234183 -157045371 - THE1C LTR MaLR 0 375 89 1438 142 19 0 chr6 32234308 32234519 -157045035 - MER1B DNA MER1_type 0 339 125 2037 122 3 0 chr6 32334547 32334841 -156944713 + AluSx SINE Alu 1 295 -17 2156 150 17 0 chr6 32334854 32335200 -156944354 - L1PB1 LINE L1 0 6151 5800 318 303 47 51 chr6 32335256 32335510 -156944044 + L1M4 LINE L1 4579 4831 -1315 2038 89 7 17 chr6 32335594 32335885 -156943669 + AluSp SINE Alu 1 288 -25 2233 56 0 3 chr6 32335885 32336170 -156943384 + AluY SINE Alu 1 284 -27 2209 60 40 0 chr6 32336189 32336487 -156943067 + AluY SINE Alu 1 310 -1 1489 81 0 5 chr6 32336664 32336862 -156942692 - AluSg/x SINE Alu -32 278 82 1748 117 4 0 chr6 32337215 32337464 -156942090 - AluSp SINE Alu 0 313 64 1367 191 26 72 chr6 32337475 32337891 -156941663 + MSTB1 LTR MaLR 51 432 0 978 187 29 85 chr6 32337908 32338014 -156941540 + L1MC3 LINE L1 7488 7598 -187 1857 164 0 0 chr6 32338014 32338306 -156941248 + AluSx SINE Alu 1 292 -20 978 187 29 85 chr6 32338306 32338404 -156941150 + L1MC3 LINE L1 7598 7670 -115 2095 108 7 0 chr6 32338404 32338699 -156940855 + AluSx SINE Alu 1 297 -15 978 187 29 85 chr6 32338699 32338809 -156940745 + L1MC3 LINE L1 7670 7785 0 229 140 0 80 chr6 32339234 32339284 -156940270 - MLT1A2 LTR MaLR 0 374 329 2033 200 83 14 chr6 32339284 32339780 -156939774 + L1MC3 LINE L1 7232 7761 -24 225 0 0 0 chr6 32339780 32339805 -156939749 + (ATTTG)n Simple_repeat Simple_repeat 2 26 0 2083 106 3 0 chr6 32339805 32340089 -156939465 - AluSp SINE Alu -28 285 1 1153 226 108 59 chr6 32341004 32341295 -156938259 - MLT1E3 LTR MaLR -234 390 76 1831 152 44 123 chr6 32341295 32341749 -156937805 + MER47B DNA MER2_type 1 418 0 1153 226 108 59 chr6 32341749 32341829 -156937725 - MLT1E3 LTR MaLR -548 76 1 1740 256 95 80 chr6 32341883 32342681 -156936873 - HERVL40 LTR ERVL -4306 1224 415 2156 109 0 3 chr6 32342795 32343097 -156936457 + AluSx SINE Alu 1 301 -11 2400 75 3 0 chr6 32343162 32343468 -156936086 + AluSp SINE Alu 5 311 -2 1140 59 20 0 chr6 32343516 32343668 -156935886 + L1PA4 LINE L1 6001 6155 0 1763 87 111 35 chr6 32343695 32343983 -156935571 + AluSg SINE Alu 1 310 0 1575 195 0 10 chr6 32344034 32344341 -156935213 - AluJo SINE Alu -8 304 1 1210 127 6 0 chr6 32344412 32344593 -156934961 - AluSx SINE Alu -130 182 1 2326 92 0 0 chr6 32344649 32344955 -156934599 - AluSq SINE Alu -5 308 3 32 0 0 0 chr6 32345180 32345212 -156934342 + GC_rich Low_complexity Low_complexity 1 32 0 2023 72 21 0 chr6 32346442 32346744 -156932810 - AluSp SINE Alu 0 308 1 202 151 57 0 chr6 32346841 32346894 -156932660 + GA-rich Low_complexity Low_complexity 5 60 0 2475 185 43 53 chr6 32347254 32347311 -156932243 - Tigger7 DNA MER2_type 0 2587 2531 1555 124 25 4 chr6 32347311 32347553 -156932001 - AluSx SINE Alu -15 297 51 2475 185 43 53 chr6 32347553 32348140 -156931414 - Tigger7 DNA MER2_type -56 2531 1940 1946 132 0 14 chr6 32348140 32348435 -156931119 - AluSx SINE Alu -21 291 1 2475 185 43 53 chr6 32348435 32348526 -156931028 - Tigger7 DNA MER2_type -647 1940 2 297 0 0 0 chr6 32348555 32348588 -156930966 + (TG)n Simple_repeat Simple_repeat 2 34 0 248 306 142 30 chr6 32348601 32348735 -156930819 - MIR3 SINE MIR -28 180 32 183 229 229 17 chr6 32348799 32348917 -156930637 + MIR SINE MIR 86 228 -34 2369 84 0 0 chr6 32349793 32350102 -156929452 - AluSg SINE Alu -1 309 1 441 0 0 0 chr6 32350232 32350281 -156929273 + (CA)n Simple_repeat Simple_repeat 2 50 0 266 266 0 0 chr6 32350684 32350748 -156928806 - L2 LINE L2 -1 3271 3208 2243 93 0 7 chr6 32351215 32351517 -156928037 - AluSc SINE Alu -9 300 1 431 230 30 0 chr6 32351743 32351843 -156927711 - MER94 DNA DNA -19 115 13 2028 112 0 0 chr6 32352124 32352564 -156926990 - AluSq SINE Alu 0 440 1 2144 88 0 3 chr6 32354033 32354377 -156925177 - AluSg SINE Alu 0 343 1 190 314 29 14 chr6 32355263 32355333 -156924221 - L3b LINE CR1 -2 1581 1511 404 236 91 0 chr6 32356205 32356315 -156923239 + Charlie4a DNA MER1_type 17 136 -372 1978 110 0 0 chr6 32356316 32356589 -156922965 + AluSg SINE Alu 2 274 -36 1333 177 47 86 chr6 32356655 32356793 -156922761 + Charlie4a DNA MER1_type 133 275 -1686 1970 102 36 0 chr6 32356793 32357099 -156922455 + AluSq SINE Alu 1 316 0 1333 177 47 86 chr6 32357099 32357163 -156922391 + Charlie4a DNA MER1_type 275 340 -1621 2234 81 24 0 chr6 32357163 32357458 -156922096 + AluSq SINE Alu 1 302 -11 1333 177 47 86 chr6 32357458 32357637 -156921917 + Charlie4a DNA MER1_type 340 501 -7 280 297 76 17 chr6 32357871 32357989 -156921565 - L2 LINE L2 -3 3310 3186 202 270 139 29 chr6 32358159 32358296 -156921258 + MIR SINE MIR 110 261 -1 531 282 113 19 chr6 32359106 32359319 -156920235 - MIR SINE MIR -10 252 20 418 278 0 26 chr6 32359796 32359911 -156919643 + MIR SINE MIR 60 171 -91 208 270 16 32 chr6 32360236 32360299 -156919255 + L2 LINE L2 3169 3230 -42 624 226 7 13 chr6 32360526 32360681 -156918873 - Charlie4a DNA MER1_type -324 184 31 993 201 61 58 chr6 32360860 32361035 -156918519 + Charlie4a DNA MER1_type 24 197 -1764 2379 78 3 0 chr6 32361035 32361341 -156918213 + AluSp SINE Alu 1 307 -6 993 201 61 58 chr6 32361341 32361520 -156918034 + Charlie4a DNA MER1_type 197 435 -1526 1686 162 0 20 chr6 32361520 32361823 -156917731 + AluJb SINE Alu 1 297 -15 993 201 61 58 chr6 32361823 32361895 -156917659 + Charlie4a DNA MER1_type 435 505 -3 2091 126 3 0 chr6 32361927 32362236 -156917318 + AluSq SINE Alu 4 313 0 204 281 0 16 chr6 32362396 32362460 -156917094 - L3b LINE CR1 -217 1366 1304 530 253 55 11 chr6 32362775 32362957 -156916597 + L1MC5 LINE L1 7261 7450 -511 517 223 70 103 chr6 32362960 32363145 -156916409 + L1MC5 LINE L1 7546 7735 -226 2111 77 24 17 chr6 32363145 32363443 -156916111 - AluY SINE Alu -11 300 1 517 223 70 103 chr6 32363443 32363469 -156916085 + L1MC5 LINE L1 7735 7760 -201 1850 146 3 3 chr6 32363469 32363777 -156915777 + AluJb SINE Alu 2 309 -3 517 223 70 103 chr6 32363777 32363935 -156915619 + L1MC5 LINE L1 7760 7905 -56 2245 71 7 3 chr6 32363935 32364229 -156915325 - AluSp SINE Alu -17 296 2 517 223 70 103 chr6 32364229 32364256 -156915298 + L1MC5 LINE L1 7905 7931 -30 2228 86 16 0 chr6 32364590 32364893 -156914661 - AluSp SINE Alu -5 308 1 2071 95 61 0 chr6 32365423 32365717 -156913837 + AluSx SINE Alu 1 312 0 243 0 0 0 chr6 32365841 32365868 -156913686 + (TG)n Simple_repeat Simple_repeat 1 27 0 2114 75 3 33 chr6 32365885 32366191 -156913363 - AluY SINE Alu -14 297 1 801 126 0 114 chr6 32366197 32366364 -156913190 - FRAM SINE Alu -1 175 28 363 302 61 47 chr6 32366412 32366690 -156912864 - L1MC4a LINE L1 -1917 5891 5610 1862 118 12 56 chr6 32367256 32367602 -156911952 - AluSq SINE Alu 0 332 1 498 253 43 12 chr6 32368295 32368457 -156911097 - MIR SINE MIR -7 255 89 961 125 0 0 chr6 32368489 32368625 -156910929 + AluSq/x SINE Alu 1 136 -177 1807 91 6 91 chr6 32368625 32368943 -156910611 + AluSc SINE Alu 1 291 -18 189 0 0 0 chr6 32369156 32369177 -156910377 + (GGA)n Simple_repeat Simple_repeat 1 21 0 925 235 35 0 chr6 32370215 32370415 -156909139 - MER3 DNA MER1_type 0 209 3 909 239 54 25 chr6 32370955 32371194 -156908360 - MIR SINE MIR -5 257 12 2223 81 14 0 chr6 32371406 32371702 -156907852 + AluSp SINE Alu 1 300 -13 1227 186 88 14 chr6 32371890 32372175 -156907379 - AluJb SINE Alu -6 306 1 583 144 0 0 chr6 32372584 32372674 -156906880 + FRAM SINE Alu 64 153 -23 413 250 56 7 chr6 32372883 32373027 -156906527 - L1MC4a LINE L1 -1936 5872 5722 309 311 25 8 chr6 32373067 32373189 -156906365 - L2 LINE L2 0 3313 3190 687 218 48 126 chr6 32373307 32373373 -156906181 - MER45C DNA AcHobo -629 952 882 713 169 0 0 chr6 32373373 32373491 -156906063 + FLAM_C SINE Alu 1 118 -15 687 218 48 126 chr6 32373491 32373598 -156905956 - MER45C DNA AcHobo -699 882 805 2434 61 0 3 chr6 32373598 32373910 -156905644 - AluY SINE Alu 0 311 1 687 218 48 126 chr6 32373910 32374006 -156905548 - MER45C DNA AcHobo -776 805 703 1365 211 11 15 chr6 32374080 32374350 -156905204 - MER45C DNA AcHobo -684 269 1 413 305 93 7 chr6 32374431 32374582 -156904972 + MIR SINE MIR 97 260 -2 2210 84 10 3 chr6 32374917 32375228 -156904326 - AluSq SINE Alu 0 313 1 2458 58 0 7 chr6 32375239 32375549 -156904005 - AluY SINE Alu -3 308 1 466 214 112 59 chr6 32375848 32376035 -156903519 + L3 LINE CR1 1265 1461 -116 398 257 47 74 chr6 32376904 32376939 -156902615 + MIR SINE MIR 84 118 -144 2381 60 7 3 chr6 32376939 32377240 -156902314 - AluSp SINE Alu -11 302 1 398 257 47 74 chr6 32377240 32377352 -156902202 + MIR SINE MIR 118 227 -35 273 231 130 0 chr6 32377393 32377501 -156902053 + L2 LINE L2 3192 3313 0 1968 80 42 18 chr6 32377684 32377970 -156901584 - AluSc SINE Alu -16 293 1 1022 58 0 29 chr6 32377970 32378107 -156901447 - AluSg SINE Alu -176 134 2 327 258 31 47 chr6 32378581 32378709 -156900845 - MIR SINE MIR -73 189 64 225 178 0 10 chr6 32379173 32379422 -156900132 + AluSx SINE Alu 1 295 -5 1964 73 36 11 chr6 32379550 32379848 -156899706 - AluY SINE Alu 0 305 1 1576 153 35 0 chr6 32379934 32380188 -156899366 + AluSx SINE Alu 1 263 -49 225 65 0 0 chr6 32380191 32380222 -156899332 + (TA)n Simple_repeat Simple_repeat 1 31 0 2119 125 0 0 chr6 32380289 32380593 -156898961 - AluSg SINE Alu -6 304 1 200 35 35 0 chr6 32380594 32380623 -156898931 + (TTC)n Simple_repeat Simple_repeat 1 30 0 700 169 73 0 chr6 32380623 32380747 -156898807 - FLAM_C SINE Alu 0 133 1 604 219 16 0 chr6 32380857 32380985 -156898569 + FLAM_A SINE Alu 1 130 -12 1697 113 20 4 chr6 32380987 32381235 -156898319 + AluSx SINE Alu 1 252 -60 949 110 14 0 chr6 32381235 32381380 -156898174 + AluSp/q SINE Alu 167 313 0 2006 123 14 0 chr6 32381577 32381869 -156897685 + AluSx SINE Alu 1 296 -16 199 229 36 84 chr6 32381908 32381991 -156897563 - L2 LINE L2 -1884 1430 1352 1680 155 54 0 chr6 32382306 32382616 -156896938 + AluSx SINE Alu 1 325 0 420 299 79 6 chr6 32383225 32383402 -156896152 + MIR SINE MIR 73 262 0 276 268 37 37 chr6 32383618 32383700 -156895854 - L2 LINE L2 -64 3249 3168 1207 158 10 5 chr6 32383741 32383950 -156895604 - AluJb SINE Alu -15 297 88 291 114 0 0 chr6 32383959 32384003 -156895551 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 1126 92 7 0 chr6 32384025 32384177 -156895377 - AluSx SINE Alu -155 157 5 271 109 0 36 chr6 32384201 32384256 -156895298 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 300 355 103 0 chr6 32384300 32384534 -156895020 - L2 LINE L2 -160 3112 2855 * 415 246 77 23 chr6 32384524 32384654 -156894900 + MIR SINE MIR 15 151 -111 1696 118 7 85 chr6 32385057 32385391 -156894163 - AluSx SINE Alu 0 310 1 594 169 97 121 chr6 32385506 32385713 -156893841 + MER46C DNA MER2_type 1 202 -136 2038 102 17 0 chr6 32386090 32386385 -156893169 - AluSp SINE Alu -12 301 2 1789 132 108 41 chr6 32386829 32387171 -156892383 + MLT1A1 LTR MaLR 1 365 0 2260 72 3 16 chr6 32387248 32387552 -156892002 - AluY SINE Alu -11 300 1 2220 63 0 3 chr6 32387952 32388236 -156891318 + AluY SINE Alu 1 283 -28 222 37 0 0 chr6 32388239 32388266 -156891288 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 243 375 42 7 chr6 32388354 32388498 -156891056 + MIR SINE MIR 47 195 -67 2061 72 10 26 chr6 32388662 32389016 -156890538 + AluSg SINE Alu 1 310 0 2103 120 0 19 chr6 32389604 32389920 -156889634 + AluSq SINE Alu 1 310 -3 1778 96 12 20 chr6 32391060 32391310 -156888244 - AluSp SINE Alu -6 307 60 1992 209 95 62 chr6 32391313 32391905 -156887649 + MER20B DNA MER1_type 84 702 -81 1920 102 44 18 chr6 32391905 32392180 -156887374 - AluSx SINE Alu -17 295 14 1992 209 95 62 chr6 32392180 32392261 -156887293 + MER20B DNA MER1_type 702 779 -4 378 0 0 0 chr6 32392414 32392456 -156887098 + (CA)n Simple_repeat Simple_repeat 2 43 0 235 248 0 75 chr6 32393220 32393353 -156886201 + C-rich Low_complexity Low_complexity 4 126 0 249 182 15 45 chr6 32393450 32393516 -156886038 + G-rich Low_complexity Low_complexity 4 67 0 26 0 0 0 chr6 32394072 32394098 -156885456 + GC_rich Low_complexity Low_complexity 1 26 0 549 247 29 47 chr6 32396817 32396987 -156882567 + MER69 DNA AcHobo 1 167 -1059 316 147 160 0 chr6 32396989 32397064 -156882490 + MER69 DNA AcHobo 2438 2524 -2 309 269 0 67 chr6 32398177 32398326 -156881228 + CT-rich Low_complexity Low_complexity 2 140 0 * 331 335 0 22 chr6 32398220 32398402 -156881152 + C-rich Low_complexity Low_complexity 1 178 0 339 217 14 14 chr6 32400286 32400355 -156879199 - MER5A DNA MER1_type -2 187 119 252 93 37 19 chr6 32403538 32403592 -156875962 + GA-rich Low_complexity Low_complexity 1 55 0 506 274 67 18 chr6 32406186 32406350 -156873204 - MIR SINE MIR -78 184 13 762 165 8 15 chr6 32406767 32406900 -156872654 + FLAM_C SINE Alu 1 132 -1 918 226 16 5 chr6 32407251 32407437 -156872117 - MER5A DNA MER1_type 0 189 2 795 164 28 79 chr6 32407485 32407662 -156871892 + MER20 DNA MER1_type 51 218 -1 715 251 63 26 chr6 32408387 32408578 -156870976 + MIR SINE MIR 64 261 -1 185 330 102 53 chr6 32408639 32408823 -156870731 - L2 LINE L2 -837 2477 2275 2413 104 3 0 chr6 32408823 32409132 -156870422 + AluSg SINE Alu 1 310 0 185 330 102 53 chr6 32409132 32409211 -156870343 - L2 LINE L2 -1039 2275 2201 274 306 200 19 chr6 32409237 32409397 -156870157 - MIR SINE MIR -25 237 49 1193 30 0 0 chr6 32409425 32409557 -156869997 - AluY SINE Alu -179 132 1 1303 163 21 118 chr6 32409557 32409722 -156869832 - AluJo SINE Alu -1 301 122 2094 141 0 3 chr6 32409722 32410019 -156869535 - AluSg SINE Alu -14 296 1 1303 163 21 118 chr6 32410019 32410031 -156869523 - AluJo SINE Alu -180 122 110 2157 101 0 39 chr6 32410031 32410202 -156869352 - AluSg SINE Alu -16 294 139 2469 73 3 0 chr6 32410202 32410503 -156869051 - AluSp SINE Alu -11 302 1 2157 101 0 39 chr6 32410503 32410637 -156868917 - AluSg SINE Alu -171 139 1 1303 163 21 118 chr6 32410637 32410790 -156868764 - AluJo SINE Alu -192 110 2 2181 123 7 0 chr6 32410794 32411094 -156868460 - AluSx SINE Alu -10 302 1 1950 141 7 26 chr6 32411115 32411419 -156868135 - AluSx SINE Alu -14 298 1 1810 134 32 0 chr6 32411431 32411715 -156867839 - L1MC1 LINE L1 -13 6320 6028 214 175 25 0 chr6 32411965 32412005 -156867549 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 225 363 35 18 chr6 32412142 32412255 -156867299 - MIR SINE MIR -67 141 27 231 345 78 9 chr6 32413437 32413553 -156866001 - MIR3 SINE MIR -7 201 78 2125 104 3 54 chr6 32414108 32414424 -156865130 + AluSg SINE Alu 1 300 -10 250 313 127 12 chr6 32415059 32415225 -156864329 + L3b LINE CR1 1311 1495 -88 21 36 0 0 chr6 32415949 32415977 -156863577 + AT_rich Low_complexity Low_complexity 1 28 0 791 176 7 7 chr6 32415977 32416119 -156863435 - L1PB4 LINE L1 0 6156 6015 214 284 0 30 chr6 32416965 32417032 -156862522 + CT-rich Low_complexity Low_complexity 2 66 0 291 357 74 11 chr6 32418600 32418869 -156860685 - L2 LINE L2 -181 3091 2806 463 262 41 0 chr6 32421012 32421134 -156858420 - MIR SINE MIR -50 212 86 425 236 71 36 chr6 32421981 32422324 -156857230 - LTR16A1 LTR ERVL -1 456 22 207 194 42 28 chr6 32422607 32422679 -156856875 + CT-rich Low_complexity Low_complexity 5 77 0 207 234 47 0 chr6 32422879 32422943 -156856611 + G-rich Low_complexity Low_complexity 4 70 0 473 309 123 18 chr6 32424374 32424594 -156854960 + MIR SINE MIR 12 254 -8 2391 87 23 0 chr6 32425238 32425538 -156854016 + AluSg1 SINE Alu 1 307 -2 750 216 177 12 chr6 32425759 32426013 -156853541 - Cheshire DNA MER1_type -62 2358 2063 261 139 0 0 chr6 32426083 32426126 -156853428 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr6 32426129 32426150 -156853404 + AT_rich Low_complexity Low_complexity 1 21 0 882 273 156 51 chr6 32426730 32427261 -156852293 - MLT1G1 LTR MaLR -8 587 1 433 217 47 36 chr6 32427947 32428136 -156851418 - MER34C LTR ERV1 0 542 368 2261 113 0 0 chr6 32428137 32428438 -156851116 + AluSx SINE Alu 1 301 -11 1379 182 4 0 chr6 32428452 32428694 -156850860 - Tigger2 DNA MER2_type -1 2717 2475 2915 141 71 18 chr6 32428748 32429231 -156850323 - Tigger2 DNA MER2_type -1955 763 244 1634 174 4 4 chr6 32429231 32429495 -156850059 - AluJb SINE Alu -15 297 34 2915 141 71 18 chr6 32429495 32429571 -156849983 - Tigger2 DNA MER2_type -2474 244 174 4640 109 52 29 chr6 32429572 32430388 -156849166 - MER4D LTR ERV1 0 903 1 2081 100 14 7 chr6 32430405 32430706 -156848848 - AluY SINE Alu 0 303 1 1706 159 0 0 chr6 32430725 32430982 -156848572 - AluJb SINE Alu -55 257 1 680 170 59 0 chr6 32430984 32431119 -156848435 - Tigger2 DNA MER2_type -2563 155 13 602 241 73 54 chr6 32431188 32431503 -156848051 - MER34C LTR ERV1 -228 357 37 1079 168 37 0 chr6 32431637 32431809 -156847745 - AluSg/x SINE Alu -3 309 128 198 0 0 0 chr6 32431809 32431831 -156847723 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1079 168 37 0 chr6 32431831 32431849 -156847705 - AluSg/x SINE Alu -184 128 112 804 239 11 6 chr6 32432176 32432356 -156847198 - LTR39 LTR ERV1 0 783 603 3874 144 67 3 chr6 32432379 32433047 -156846507 - MER50 LTR ERV1 -11 723 13 3109 147 27 52 chr6 32433056 32433078 -156846476 - LTR39 LTR ERV1 -165 618 597 1914 181 0 0 chr6 32433078 32433381 -156846173 + AluJb SINE Alu 1 303 -9 3109 147 27 52 chr6 32433381 32433450 -156846104 - LTR39 LTR ERV1 -186 597 528 2108 100 14 17 chr6 32433450 32433741 -156845813 - AluY SINE Alu -21 290 1 3109 147 27 52 chr6 32433741 32433822 -156845732 - LTR39 LTR ERV1 -255 528 446 1143 194 163 4 chr6 32433822 32434080 -156845474 + AluJo SINE Alu 1 299 -3 3109 147 27 52 chr6 32434080 32434539 -156845015 - LTR39 LTR ERV1 -337 446 1 2110 89 32 18 chr6 32435150 32435432 -156844122 - AluSg SINE Alu -24 286 1 246 105 0 0 chr6 32435778 32435816 -156843738 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 661 207 126 6 chr6 32436123 32436297 -156843257 + MIR SINE MIR 16 210 -52 2095 113 9 14 chr6 32436301 32436647 -156842907 + MER47A DNA MER2_type 23 366 0 273 350 50 0 chr6 32436999 32437099 -156842455 + MIR SINE MIR 31 135 -73 260 246 18 0 chr6 32438801 32438858 -156840696 - L2 LINE L2 0 3313 3256 242 211 18 35 chr6 32439380 32439437 -156840117 - L2 LINE L2 -191 3081 3026 23 33 0 0 chr6 32439753 32439783 -156839771 + AT_rich Low_complexity Low_complexity 1 30 0 2246 113 17 0 chr6 32439914 32440215 -156839339 - AluSx SINE Alu -6 306 1 805 182 31 0 chr6 32440245 32440404 -156839150 - L1MB7 LINE L1 -16 6168 6005 213 294 29 0 chr6 32440600 32440668 -156838886 + CT-rich Low_complexity Low_complexity 3 72 0 214 148 204 0 chr6 32440692 32440746 -156838808 - L2 LINE L2 -3 3310 3246 379 333 60 0 chr6 32440853 32441003 -156838551 - MIR SINE MIR -72 190 32 485 287 64 35 chr6 32441274 32441476 -156838078 - MER63A DNA MER1_type -2 208 1 382 328 25 8 chr6 32441497 32441619 -156837935 - MIR SINE MIR -108 154 31 865 327 71 21 chr6 32442306 32442685 -156836869 + ERVL LTR ERVL 2122 2519 -3245 2258 112 7 0 chr6 32442724 32443020 -156836534 - AluSg SINE Alu -12 298 1 688 258 0 19 chr6 32443188 32443343 -156836211 + MER63 DNA MER1_type 674 825 -237 831 225 115 16 chr6 32444194 32444438 -156835116 + MER63 DNA MER1_type 795 1062 0 272 200 0 0 chr6 32444690 32444735 -156834819 + MER63 DNA MER1_type 763 807 -254 2372 316 47 56 chr6 32444921 32445559 -156833995 + ERVL LTR ERVL 2935 3577 -2077 1734 244 72 17 chr6 32445559 32446083 -156833471 - MLT1H1 LTR MaLR 0 555 3 2372 316 47 56 chr6 32446083 32446801 -156832753 + ERVL LTR ERVL 3577 4279 -1375 2806 232 82 43 chr6 32446901 32446939 -156832615 - MER21B LTR ERV1 -48 815 780 2370 73 0 3 chr6 32446939 32447265 -156832289 - AluY SINE Alu 0 325 1 2806 232 82 43 chr6 32447265 32447991 -156831563 - MER21B LTR ERV1 -83 780 19 473 228 0 22 chr6 32448013 32448105 -156831449 - MER21B LTR ERV1 -773 90 1 204 40 0 0 chr6 32448544 32448569 -156830985 + (CA)n Simple_repeat Simple_repeat 2 26 0 858 249 6 6 chr6 32449083 32449260 -156830294 - MER8 DNA MER2_type -62 177 1 255 341 68 0 chr6 32449261 32449349 -156830205 - L2 LINE L2 -12 3301 3208 233 337 68 22 chr6 32449440 32449769 -156829785 - L2 LINE L2 -299 2973 2631 1241 282 55 10 chr6 32449769 32450152 -156829402 + MLT1I LTR MaLR 3 402 -7 201 308 48 29 chr6 32450705 32450809 -156828745 + MIR SINE MIR 25 130 -78 2496 81 3 0 chr6 32450884 32451192 -156828362 + AluSx SINE Alu 1 309 -3 26 30 0 0 chr6 32451317 32451350 -156828204 + AT_rich Low_complexity Low_complexity 1 33 0 939 263 29 24 chr6 32453481 32453922 -156825632 - L1MD3 LINE L1 -1 8041 7610 182 100 0 0 chr6 32454166 32454196 -156825358 - L2 LINE L2 -217 3055 3026 592 309 92 0 chr6 32455058 32455275 -156824279 - MIR SINE MIR -6 256 20 424 267 96 41 chr6 32455550 32455696 -156823858 - MIR SINE MIR -80 182 29 457 228 189 0 chr6 32456176 32456303 -156823251 - L1ME2 LINE L1 -9 6155 6005 536 206 37 15 chr6 32456310 32456446 -156823108 - L1ME2 LINE L1 -213 5951 5813 1885 174 0 3 chr6 32456460 32456764 -156822790 + AluJo SINE Alu 3 305 -7 242 236 0 0 chr6 32456769 32456824 -156822730 - L1ME3 LINE L1 -8 6154 6100 674 68 0 78 chr6 32456831 32456934 -156822620 + AluJb SINE Alu 209 303 -9 835 247 80 21 chr6 32456959 32457198 -156822356 + L1ME2 LINE L1 5903 6155 -9 1783 161 64 0 chr6 32457207 32457487 -156822067 - AluJo SINE Alu -14 298 1 2024 200 79 49 chr6 32457494 32457685 -156821869 - L1ME3 LINE L1 -269 5895 5711 1734 129 8 8 chr6 32457685 32457941 -156821613 + AluJb SINE Alu 5 260 -52 936 51 0 0 chr6 32457947 32458065 -156821489 + (GAA)n Simple_repeat Simple_repeat 2 119 0 2024 200 79 49 chr6 32458065 32458475 -156821079 - L1ME3 LINE L1 -457 5707 5269 1613 251 52 12 chr6 32458490 32458988 -156820566 - L1MC4a LINE L1 -585 7223 6706 1681 147 0 4 chr6 32458989 32459248 -156820306 - Tigger2 DNA MER2_type 0 2718 2461 3656 133 111 32 chr6 32459314 32459500 -156820054 - Tigger2 DNA MER2_type -1975 743 573 2066 110 20 17 chr6 32459500 32459801 -156819753 + AluSx SINE Alu 3 304 -8 3656 133 111 32 chr6 32459801 32460301 -156819253 - Tigger2 DNA MER2_type -2145 573 3 359 274 66 44 chr6 32460301 32460637 -156818917 - L1MCc LINE L1 -4889 1534 1383 306 253 62 80 chr6 32461674 32461811 -156817743 - L1ME2 LINE L1 -468 5653 5665 1861 119 50 4 chr6 32461811 32461933 -156817621 + AluSx SINE Alu 1 116 -196 233 29 0 29 chr6 32461933 32461968 -156817586 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1861 119 50 4 chr6 32461968 32462123 -156817431 + AluSx SINE Alu 116 291 -21 306 253 62 80 chr6 32462123 32462197 -156817357 - L1ME2 LINE L1 -455 5666 5592 21 0 0 0 chr6 32462197 32462218 -156817336 + AT_rich Low_complexity Low_complexity 1 21 0 201 208 0 21 chr6 32462249 32462297 -156817257 + (TATAA)n Simple_repeat Simple_repeat 5 51 0 3391 142 11 9 chr6 32462745 32463288 -156816266 + LTR10A LTR ERV1 1 544 -65 4485 116 8 0 chr6 32463806 32464436 -156815118 - MER41B LTR ERV1 0 635 1 2311 192 24 2 chr6 32464472 32464889 -156814665 + MSTB LTR MaLR 1 426 0 2032 172 9 0 chr6 32465445 32465794 -156813760 + MER47A DNA MER2_type 15 366 0 218 237 17 0 chr6 32465889 32465948 -156813606 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 6266 63 5 0 chr6 32467430 32468206 -156811348 - LTR17 LTR ERV1 0 780 1 5248 172 20 19 chr6 32468618 32469443 -156810111 - MER49 LTR ERV1 0 923 95 1958 159 0 0 chr6 32469443 32469745 -156809809 - AluSx SINE Alu -10 302 1 5248 172 20 19 chr6 32469745 32469832 -156809722 - MER49 LTR ERV1 -828 95 10 316 209 99 11 chr6 32469842 32469933 -156809621 - MARNA DNA Mariner -334 252 154 246 288 0 0 chr6 32471519 32471585 -156807969 + CT-rich Low_complexity Low_complexity 1 66 0 251 393 9 0 chr6 32473366 32473478 -156806076 - L3 LINE CR1 -477 1100 988 809 239 111 57 chr6 32473595 32473892 -156805662 + MER93a LTR ERV1 90 402 0 363 306 35 21 chr6 32474047 32474191 -156805363 + MIR3 SINE MIR 31 176 -32 730 194 188 0 chr6 32474568 32474754 -156804800 + MIR SINE MIR 15 235 -27 185 227 164 62 chr6 32474874 32475002 -156804552 - MIR SINE MIR -51 211 71 253 279 0 0 chr6 32476291 32476359 -156803195 + MIR SINE MIR 85 152 -110 461 256 63 19 chr6 32476414 32476621 -156802933 + L2 LINE L2 528 743 -2571 3832 263 138 26 chr6 32476638 32477575 -156801979 + L2 LINE L2 971 1802 -1512 1721 176 90 9 chr6 32477575 32477921 -156801633 + MLT1A2 LTR MaLR 1 374 0 3832 263 138 26 chr6 32477921 32478608 -156800946 + L2 LINE L2 1802 2777 -537 1024 202 19 5 chr6 32478635 32478843 -156800711 - MER20 DNA MER1_type -8 211 1 2834 130 2 14 chr6 32478856 32479280 -156800274 - L1P3 LINE L1 -6042 419 1 1333 135 4 58 chr6 32479277 32479537 -156800017 - L1MA5 LINE L1 -241 6059 5814 * 3045 269 35 28 chr6 32479520 32480806 -156798748 - L1M4c LINE L1 -4071 2492 1052 2905 13 0 0 chr6 32480806 32481117 -156798437 - AluYa5 SINE Alu 0 311 1 3045 269 35 28 chr6 32481117 32481265 -156798289 - L1M4c LINE L1 -5511 1052 906 4077 241 66 12 chr6 32481279 32482626 -156796928 + L1M4 LINE L1 2220 3639 -2507 2385 97 3 0 chr6 32483227 32483527 -156796027 + AluSp SINE Alu 1 301 -12 1414 228 20 0 chr6 32484518 32484860 -156794694 + L1MB5 LINE L1 5817 6165 -9 2088 167 27 3 chr6 32485988 32486353 -156793201 - MLT1B LTR MaLR -16 374 1 499 270 0 0 chr6 32486538 32486649 -156792905 + MER81 DNA DNA 3 113 -1 2299 126 113 13 chr6 32488750 32489139 -156790415 - MSTA LTR MaLR 0 428 1 181 318 47 28 chr6 32489243 32489350 -156790204 - MIR SINE MIR -10 252 144 322 266 11 11 chr6 32489480 32489574 -156789980 - L1M4 LINE L1 -1308 4838 4745 604 254 84 48 chr6 32489605 32489919 -156789635 + L1MCa LINE L1 1474 1990 -4617 1141 225 31 73 chr6 32489919 32490301 -156789253 - L1M4 LINE L1 -1996 4150 3785 1814 246 59 16 chr6 32490356 32490962 -156788592 + L1M4 LINE L1 4650 5281 -865 1738 180 3 22 chr6 32491482 32491799 -156787755 - AluJb SINE Alu -1 311 1 180 245 0 0 chr6 32492132 32492185 -156787369 + (CA)n Simple_repeat Simple_repeat 1 53 0 260 185 0 15 chr6 32492397 32492462 -156787092 + GA-rich Low_complexity Low_complexity 4 67 0 296 256 87 65 chr6 32493661 32493891 -156785663 + SN5 Other centromeric 1 235 -220 2471 117 112 5 chr6 32499041 32499461 -156780093 + MER4C LTR ERV1 1 465 0 504 119 165 28 chr6 32499464 32499548 -156780006 + MER4C-int LTR ERV1 1 105 -6493 1810 158 0 13 chr6 32499548 32499859 -156779695 - AluJb SINE Alu -5 307 1 504 119 165 28 chr6 32499859 32499883 -156779671 + MER4C-int LTR ERV1 105 124 -6474 4526 146 17 20 chr6 32499883 32500596 -156778958 + MER50 LTR ERV1 1 711 -23 2059 144 129 84 chr6 32500597 32501441 -156778113 + MER4C-int LTR ERV1 121 1037 -5561 2012 206 168 0 chr6 32501441 32501964 -156777590 - LTR36 LTR ERV1 0 611 1 372 104 78 26 chr6 32501964 32502041 -156777513 + MER4C-int LTR ERV1 1034 1114 -5484 * 8519 139 59 53 chr6 32502028 32502649 -156776905 + MER4C-int LTR ERV1 1506 2121 -4477 1539 185 0 21 chr6 32502649 32502935 -156776619 + AluJb SINE Alu 13 292 -20 8519 139 59 53 chr6 32502935 32504584 -156774970 + MER4C-int LTR ERV1 2121 4800 -1798 254 83 0 42 chr6 32504602 32504650 -156774904 - PABL_A-int LTR ERV1 -1676 3339 3294 24 32 0 0 chr6 32504658 32504689 -156774865 + AT_rich Low_complexity Low_complexity 1 31 0 924 208 46 63 chr6 32504784 32505068 -156774486 - L1MC/D LINE L1 -2028 5757 5479 207 0 0 0 chr6 32505801 32505824 -156773730 + (T)n Simple_repeat Simple_repeat 1 23 0 1288 174 38 38 chr6 32506133 32506426 -156773128 + MER9 LTR ERVK 219 511 0 256 277 78 43 chr6 32507977 32508118 -156771436 + MIR SINE MIR 81 226 -36 244 224 17 0 chr6 32508468 32508526 -156771028 + (TG)n Simple_repeat Simple_repeat 2 60 0 224 241 139 46 chr6 32508822 32508930 -156770624 - MIR3 SINE MIR -53 155 38 1925 195 40 5 chr6 32509335 32509730 -156769824 + L1MB1 LINE L1 5719 6127 -41 1858 235 29 58 chr6 32509758 32510722 -156768832 - L1ME1 LINE L1 -328 5838 4940 2142 91 7 10 chr6 32510722 32511031 -156768523 + AluSg1 SINE Alu 1 308 -1 1858 235 29 58 chr6 32511031 32511208 -156768346 - L1ME1 LINE L1 -1226 4940 4759 226 382 66 7 chr6 32511280 32511432 -156768122 + MIR SINE MIR 7 167 -95 331 359 62 14 chr6 32511461 32511606 -156767948 - L2 LINE L2 -7 3306 3155 1698 222 28 8 chr6 32511949 32512324 -156767230 - L1MB7 LINE L1 -13 6171 5786 2028 202 60 14 chr6 32512324 32512770 -156766784 - MLT1C LTR MaLR 0 467 1 1698 222 28 8 chr6 32512770 32512791 -156766763 - L1MB7 LINE L1 -398 5786 5767 263 342 0 0 chr6 32513022 32513101 -156766453 - MIR SINE MIR -164 98 20 2053 159 105 0 chr6 32513463 32513816 -156765738 - MLT1B LTR MaLR 0 390 1 2040 137 0 7 chr6 32513907 32514214 -156765340 - AluSx SINE Alu -6 306 2 2347 112 21 21 chr6 32514252 32514627 -156764927 + THE1C LTR MaLR 1 375 0 323 272 132 37 chr6 32514825 32514961 -156764593 + L1M4 LINE L1 3438 3586 -2560 572 286 48 31 chr6 32515031 32515494 -156764060 - HERV16 LTR ERVL -3905 1091 596 235 207 12 24 chr6 32516240 32516322 -156763232 + L1M4 LINE L1 2900 2980 -3166 207 245 70 9 chr6 32516923 32517003 -156762551 + MIR SINE MIR 59 146 -62 1427 229 89 30 chr6 32517344 32517780 -156761774 + MLT1C LTR MaLR 6 467 0 1962 182 14 6 chr6 32521938 32522300 -156757254 + MLT1A1 LTR MaLR 1 365 0 489 237 23 0 chr6 32522604 32522735 -156756819 - MER94 DNA DNA 0 134 1 1257 191 107 105 chr6 32523179 32523608 -156755946 + MLT1C LTR MaLR 34 463 -4 1326 154 33 11 chr6 32526387 32526629 -156752925 + LTR1 LTR ERV1 565 785 0 3444 263 27 17 chr6 32526629 32528011 -156751543 + L1M1 LINE L1 3045 4450 -3115 644 129 89 0 chr6 32528011 32528135 -156751419 + L1MD1 LINE L1 6108 6242 0 256 200 50 100 chr6 32528227 32528307 -156751247 + L1ME LINE L1 5619 5694 -476 1670 156 184 19 chr6 32528777 32529142 -156750412 - MSTA LTR MaLR -3 425 1 285 185 36 0 chr6 32532649 32532711 -156746843 - L1MB1 LINE L1 -2 6664 6601 595 292 83 35 chr6 32532711 32532735 -156746819 + L2 LINE L2 2691 2712 -601 1328 180 6 84 chr6 32532735 32533058 -156746496 + AluJb SINE Alu 1 298 -4 595 292 83 35 chr6 32533058 32533492 -156746062 + L2 LINE L2 2712 3176 -137 480 272 48 7 chr6 32533523 32533670 -156745884 - MIR SINE MIR -13 249 97 3629 180 13 28 chr6 32533687 32533974 -156745580 - L1MB1 LINE L1 -61 6605 6315 2030 121 3 0 chr6 32533974 32534263 -156745291 - AluSg SINE Alu -20 290 1 3629 180 13 28 chr6 32534263 32534686 -156744868 - L1MB1 LINE L1 -351 6315 5906 269 307 112 15 chr6 32535891 32536096 -156743458 + L2 LINE L2 2922 3146 -167 29 60 0 0 chr6 32536351 32536401 -156743153 + AT_rich Low_complexity Low_complexity 1 50 0 248 178 32 70 chr6 32536438 32536623 -156742931 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 24 100 0 0 chr6 32536673 32536753 -156742801 + AT_rich Low_complexity Low_complexity 1 80 0 21 36 0 0 chr6 32537245 32537273 -156742281 + AT_rich Low_complexity Low_complexity 1 28 0 207 207 37 44 chr6 32537304 32537439 -156742115 + (TATAA)n Simple_repeat Simple_repeat 2 135 0 24 0 0 0 chr6 32537510 32537534 -156742020 + AT_rich Low_complexity Low_complexity 1 24 0 2187 100 0 7 chr6 32537865 32538165 -156741389 + AluSg SINE Alu 1 298 -12 493 335 46 0 chr6 32540079 32540276 -156739278 + MIR SINE MIR 6 211 -51 21 0 0 0 chr6 32541057 32541078 -156738476 + AT_rich Low_complexity Low_complexity 1 21 0 313 294 94 65 chr6 32541446 32541786 -156737768 - L1MB1 LINE L1 -891 5753 5404 314 320 55 20 chr6 32543121 32543321 -156736233 + MLT1L LTR MaLR 404 610 -5 439 218 27 95 chr6 32543647 32543794 -156735760 + AluSg/x SINE Alu 152 288 -21 4859 114 10 0 chr6 32543796 32544516 -156735038 + L1PA7 LINE L1 4428 5154 -992 7513 56 7 0 chr6 32544562 32545590 -156733964 + L1PA7 LINE L1 5119 6150 -4 21 0 0 0 chr6 32546960 32546981 -156732573 + AT_rich Low_complexity Low_complexity 1 21 0 1414 199 52 0 chr6 32547287 32547614 -156731940 + L1MB5 LINE L1 5821 6164 -10 2197 179 11 0 chr6 32548754 32549129 -156730425 - MLT1B LTR MaLR -11 379 1 312 300 0 11 chr6 32549313 32549403 -156730151 + MER81 DNA DNA 4 92 -22 303 244 307 36 chr6 32549626 32549958 -156729596 - L2 LINE L2 -39 3274 2853 5342 41 0 3 chr6 32551714 32552372 -156727182 - L1PA4 LINE L1 0 6155 5545 1430 25 0 0 chr6 32552372 32552534 -156727020 + L1PA4 LINE L1 5403 5564 -590 1393 215 56 24 chr6 32554166 32554523 -156725031 - MLT1B LTR MaLR 0 396 25 1244 217 46 63 chr6 32555197 32555654 -156723900 - Charlie1b DNA MER1_type -38 485 37 350 267 85 28 chr6 32556142 32556318 -156723236 - L1MB1 LINE L1 -1214 5430 5245 609 322 15 18 chr6 32556351 32556677 -156722877 + L1MEc LINE L1 1451 1775 -4621 1167 214 42 50 chr6 32556709 32557046 -156722508 - L1MB1 LINE L1 -2028 4616 4283 1955 263 21 26 chr6 32557085 32557740 -156721814 + L1M4 LINE L1 4629 5280 -866 1445 172 15 4 chr6 32558845 32559107 -156720447 - MLT1B LTR MaLR -11 379 115 3870 246 27 55 chr6 32559248 32560421 -156719133 - L1MB1 LINE L1 -5401 1141 2 4157 145 28 2 chr6 32560423 32561042 -156718512 - MER41B LTR ERV1 0 635 1 578 265 50 42 chr6 32561162 32561481 -156718073 - L1MDa LINE L1 -4372 2168 1883 1827 202 23 8 chr6 32562426 32562777 -156716777 + MLT1A1 LTR MaLR 7 362 -3 2785 221 25 7 chr6 32562823 32563375 -156716179 - REP3 LTR ERV 0 562 1 202 229 16 16 chr6 32563542 32563603 -156715951 + CT-rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chr6 32565475 32565496 -156714058 + AT_rich Low_complexity Low_complexity 1 21 0 354 286 94 36 chr6 32565653 32565929 -156713625 - L1MC4 LINE L1 -3 8039 7748 2088 107 0 40 chr6 32565929 32566228 -156713326 + AluSq SINE Alu 1 287 -26 24 0 0 0 chr6 32566233 32566257 -156713297 + AT_rich Low_complexity Low_complexity 1 24 0 304 285 168 74 chr6 32566996 32567252 -156712302 - L1ME3A LINE L1 -3 6167 5888 437 279 121 6 chr6 32567641 32567806 -156711748 - MIR SINE MIR -29 233 50 521 288 95 31 chr6 32568050 32568272 -156711282 - MIR SINE MIR -13 249 14 1786 199 38 28 chr6 32568746 32569168 -156710386 - L1ME2 LINE L1 -1 6163 5738 1374 257 73 75 chr6 32569168 32569728 -156709826 + MLT1F1 LTR MaLR 1 559 -8 593 185 15 0 chr6 32569736 32569866 -156709688 - L1ME2 LINE L1 -422 5742 5611 255 213 0 0 chr6 32569862 32569909 -156709645 - L1M3 LINE L1 -709 5969 5923 * 2425 39 43 0 chr6 32569924 32570206 -156709348 - AluY SINE Alu -17 294 1 2084 133 3 0 chr6 32570206 32570498 -156709056 - AluSx SINE Alu -18 294 1 1043 180 74 5 chr6 32570523 32570547 -156709007 - L1MA9 LINE L1 -40 6272 6251 1912 107 7 4 chr6 32570547 32570818 -156708736 - AluSx SINE Alu -3 309 38 1043 180 74 5 chr6 32570818 32571010 -156708544 - L1MA9 LINE L1 -61 6251 6041 * 1343 208 85 11 chr6 32571002 32571482 -156708072 - L1M3 LINE L1 -719 5941 5434 325 0 0 0 chr6 32571512 32571547 -156708007 - U2 snRNA snRNA -153 35 1 599 232 0 7 chr6 32571600 32571738 -156707816 - L1M3 LINE L1 -1213 5431 5295 * 884 236 137 19 chr6 32571737 32572059 -156707495 - L1ME LINE L1 -407 5759 5400 386 229 115 0 chr6 32572059 32572155 -156707399 - MLT2B3 LTR ERVL -323 231 125 544 263 96 50 chr6 32572162 32572674 -156706880 - L1M3 LINE L1 -5296 1250 713 300 311 11 50 chr6 32573040 32573220 -156706334 - L1M3 LINE L1 -6362 180 8 201 122 27 68 chr6 32573221 32573295 -156706259 + T-rich Low_complexity Low_complexity 1 71 0 1100 290 60 37 chr6 32573350 32574006 -156705548 - L1MEc LINE L1 -4333 2063 1393 5059 150 31 13 chr6 32574099 32575884 -156703670 - L1PA15 LINE L1 -1 6164 4351 2191 125 0 0 chr6 32576512 32576817 -156702737 + AluSx SINE Alu 1 305 -7 1357 198 72 52 chr6 32577106 32577454 -156702100 - L1MC1 LINE L1 -40 6293 5939 2557 74 0 3 chr6 32578134 32578444 -156701110 + AluSc SINE Alu 1 309 0 205 210 12 62 chr6 32580986 32581067 -156698487 + CT-rich Low_complexity Low_complexity 3 79 0 2238 107 13 0 chr6 32581146 32581445 -156698109 + AluSq SINE Alu 1 303 -10 345 369 12 31 chr6 32581890 32582050 -156697504 - MIR3 SINE MIR -9 199 43 2501 115 19 25 chr6 32582064 32582428 -156697126 - THE1B LTR MaLR 0 364 3 1833 206 58 94 chr6 32582732 32583335 -156696219 + L1ME1 LINE L1 5582 6162 -4 434 316 26 94 chr6 32584368 32584504 -156695050 - MIR SINE MIR -10 252 108 195 42 0 0 chr6 32584504 32584528 -156695026 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2264 118 44 0 chr6 32584535 32584856 -156694698 + L1PA15 LINE L1 5825 6159 -6 434 316 26 94 chr6 32584856 32584977 -156694577 - MIR SINE MIR -160 102 5 198 339 27 45 chr6 32586570 32586682 -156692872 + MIR SINE MIR 25 134 -128 21 36 0 0 chr6 32588334 32588362 -156691192 + AT_rich Low_complexity Low_complexity 1 28 0 914 253 56 45 chr6 32588708 32589083 -156690471 + L1MC4 LINE L1 7450 7828 -214 3380 24 0 0 chr6 32589091 32589472 -156690082 - L1P2 LINE L1 -342 5813 5433 379 294 84 8 chr6 32589641 32589760 -156689794 + MIR SINE MIR 16 143 -65 2983 238 11 27 chr6 32589766 32590429 -156689125 + MER82 DNA MER2_type 1 652 -1 906 158 19 0 chr6 32591853 32592011 -156687543 + L1MA8 LINE L1 3748 3908 -2238 * 5868 151 26 11 chr6 32592008 32593397 -156686157 + L1MA8 LINE L1 4874 6286 -5 24 0 0 0 chr6 32595241 32595265 -156684289 + AT_rich Low_complexity Low_complexity 1 24 0 1912 119 24 7 chr6 32595635 32595929 -156683625 - L1PB4 LINE L1 -6 6150 5852 234 296 8 104 chr6 32595949 32596074 -156683480 + L3 LINE CR1 1423 1535 -42 235 348 101 40 chr6 32596469 32596696 -156682858 + L2 LINE L2 2638 2878 -436 282 435 36 0 chr6 32596928 32597066 -156682488 + L2 LINE L2 3116 3258 -14 264 256 24 143 chr6 32597571 32597665 -156681889 + L2 LINE L2 2909 2976 -296 2549 64 0 6 chr6 32597665 32597977 -156681577 - AluY SINE Alu -1 310 1 264 256 24 143 chr6 32597977 32598050 -156681504 + L2 LINE L2 2976 3056 -216 191 36 36 0 chr6 32598688 32598716 -156680838 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2318 89 6 0 chr6 32599908 32600221 -156679333 - L1PA13 LINE L1 -5 6158 5844 21 57 0 0 chr6 32600255 32600290 -156679264 + AT_rich Low_complexity Low_complexity 1 35 0 614 213 66 119 chr6 32600681 32601108 -156678446 - L1MC5 LINE L1 -50 7911 7508 311 291 4 58 chr6 32601153 32601331 -156678223 - L1MC4 LINE L1 -441 7447 7201 278 300 10 30 chr6 32601498 32601598 -156677956 - MLT1J LTR MaLR -68 443 346 574 173 87 16 chr6 32601609 32601736 -156677818 - THE1C LTR MaLR -239 136 1 332 285 39 0 chr6 32601815 32601945 -156677609 - LTR67 LTR ERVL -12 545 411 1585 189 0 6 chr6 32602314 32602642 -156676912 - L1P5 LINE L1 -813 5333 5008 * 2338 136 5 22 chr6 32602637 32603041 -156676513 + L1P5 LINE L1 5349 5745 -411 246 172 52 0 chr6 32603037 32603095 -156676459 - L1MCa LINE L1 -4368 2058 1998 * 1968 176 47 39 chr6 32603102 32603804 -156675750 - L1MCa LINE L1 -4499 1927 1127 8720 200 45 30 chr6 32603830 32606613 -156672941 - L1MA9 LINE L1 -7 6305 3477 465 261 96 27 chr6 32606750 32606938 -156672616 + MLT1G LTR MaLR 389 589 -1 21 0 0 0 chr6 32607290 32607311 -156672243 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr6 32607847 32607875 -156671679 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 32609329 32609357 -156670197 + AT_rich Low_complexity Low_complexity 1 28 0 1928 137 14 0 chr6 32609469 32609754 -156669800 - AluSx SINE Alu -12 300 12 21 57 0 0 chr6 32611023 32611058 -156668496 + AT_rich Low_complexity Low_complexity 1 35 0 13914 226 37 21 chr6 32611943 32615630 -156663924 - L1PA12 LINE L1 -1378 6206 2461 7382 240 21 16 chr6 32615679 32617328 -156662226 - L1PA12 LINE L1 -5924 1657 2 664 324 41 5 chr6 32617365 32617584 -156661970 - MIR SINE MIR -3 259 33 717 179 26 0 chr6 32617762 32617879 -156661675 + MER45 DNA AcHobo 9 128 -1453 9073 77 3 1 chr6 32617881 32619894 -156659660 - L1PA7 LINE L1 -2 6152 4141 688 299 111 0 chr6 32619995 32620202 -156659352 + MIR SINE MIR 3 232 -30 504 286 29 39 chr6 32620284 32620491 -156659063 + MLT1H1 LTR MaLR 1 208 -338 1519 319 75 15 chr6 32620505 32621962 -156657592 - HERVL LTR ERVL -3106 2548 900 272 159 0 0 chr6 32622213 32622257 -156657297 - MLT2C2 LTR ERVL 0 464 421 * 713 199 72 18 chr6 32622255 32622421 -156657133 - MLT2B1 LTR ERVL -343 177 3 4194 212 62 13 chr6 32622879 32624364 -156655190 - L1MA10 LINE L1 -11 6323 4757 1862 200 49 30 chr6 32624383 32624877 -156654677 + L1 LINE L1 4297 4799 -1347 1922 155 3 19 chr6 32625034 32625350 -156654204 + AluSx SINE Alu 1 311 -1 349 315 61 90 chr6 32625429 32625775 -156653779 + MLT1H1-int LTR MaLR 1022 1357 -14 369 237 101 8 chr6 32625788 32625913 -156653641 + MLT1H1 LTR MaLR 1 188 -361 330 26 0 0 chr6 32626029 32626068 -156653486 + (GA)n Simple_repeat Simple_repeat 1 39 0 537 232 56 14 chr6 32626073 32626215 -156653339 + MLT1G LTR MaLR 442 589 -1 1038 250 80 9 chr6 32627723 32628047 -156651507 + L1MC4a LINE L1 5520 5866 -1942 23 0 0 0 chr6 32628317 32628340 -156651214 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr6 32631702 32631730 -156647824 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr6 32632530 32632563 -156646991 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr6 32632836 32632870 -156646684 + AT_rich Low_complexity Low_complexity 1 34 0 30 59 0 0 chr6 32633095 32633146 -156646408 + AT_rich Low_complexity Low_complexity 1 51 0 812 216 5 44 chr6 32633147 32633351 -156646203 - AluJo SINE Alu 0 312 117 614 327 45 5 chr6 32633367 32633587 -156645967 - MIR SINE MIR -3 259 31 1848 115 67 11 chr6 32634009 32634319 -156645235 + AluSx SINE Alu 1 312 0 8404 219 74 2 chr6 32634422 32636197 -156643357 + L1M2 LINE L1 2 1905 -4944 1168 125 40 0 chr6 32737626 32737802 -156541752 + LTR1 LTR ERV1 603 785 0 27 49 0 0 chr6 32737934 32737975 -156541579 + AT_rich Low_complexity Low_complexity 1 41 0 2208 110 0 0 chr6 32737975 32738256 -156541298 + AluSx SINE Alu 1 281 -31 252 143 0 0 chr6 32738258 32738300 -156541254 + (TA)n Simple_repeat Simple_repeat 2 43 0 366 260 13 87 chr6 32738309 32738459 -156541095 - L2 LINE L2 -32 3281 3143 297 238 12 24 chr6 32738805 32738889 -156540665 - MLT1H LTR MaLR -458 91 9 235 313 20 20 chr6 32738915 32739014 -156540540 - MLT1H-int LTR MaLR -23 1348 1250 3926 86 34 9 chr6 32739063 32739619 -156539935 + LTR19B LTR ERV1 1 570 -10 260 0 57 0 chr6 32739620 32739655 -156539899 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 2054 118 16 10 chr6 32739658 32739963 -156539591 - AluSc SINE Alu -2 307 1 613 292 60 45 chr6 32740578 32741299 -156538255 + L1M4 LINE L1 1169 2065 -4760 1536 114 0 0 chr6 32742096 32742298 -156537256 + AluSg/x SINE Alu 96 297 -13 209 319 6 41 chr6 32743725 32743894 -156535660 + (TCTCTG)n Simple_repeat Simple_repeat 6 168 0 * 252 296 0 38 chr6 32743809 32743968 -156535586 + CT-rich Low_complexity Low_complexity 3 155 0 195 100 0 0 chr6 32744006 32744036 -156535518 + (TG)n Simple_repeat Simple_repeat 2 31 0 421 189 0 0 chr6 32744572 32744646 -156534908 - MER30 DNA MER1_type 0 230 157 299 216 14 40 chr6 32744992 32745066 -156534488 + MLT1J1 LTR MaLR 67 138 -308 3975 131 56 9 chr6 32745392 32745569 -156533985 - L1MA7 LINE L1 -2 6289 6122 1533 188 83 22 chr6 32745569 32745893 -156533661 - MER2 DNA MER2_type 0 344 1 3975 131 56 9 chr6 32745893 32746380 -156533174 - L1MA7 LINE L1 -169 6122 5594 689 284 53 13 chr6 32746491 32746716 -156532838 + LTR16A LTR ERVL 32 265 -185 287 222 42 127 chr6 32746890 32747079 -156532475 - HAL1b LINE L1 -464 884 712 611 298 107 32 chr6 32747173 32747837 -156531717 - HAL1 LINE L1 -725 1782 1069 185 379 0 0 chr6 32748170 32748228 -156531326 + L2 LINE L2 3134 3191 -81 977 235 94 52 chr6 32748586 32749105 -156530449 - L1MC5 LINE L1 -44 7917 7377 252 86 0 0 chr6 32749289 32749324 -156530230 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 850 80 0 80 chr6 32749327 32749465 -156530089 - AluJo/FRAM SINE Alu -30 282 156 274 208 180 14 chr6 32749465 32749548 -156530006 - AluJ/FLAM SINE Alu -215 87 3 21 36 0 0 chr6 32749622 32749650 -156529904 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr6 32749672 32749702 -156529852 + AT_rich Low_complexity Low_complexity 1 30 0 300 91 0 0 chr6 32749940 32749984 -156529570 + (CA)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr6 32750020 32750046 -156529508 + AT_rich Low_complexity Low_complexity 1 26 0 2052 132 19 12 chr6 32750158 32750477 -156529077 - L1MC1 LINE L1 0 6333 6013 282 296 96 30 chr6 32750923 32751058 -156528496 - MIR SINE MIR -27 235 92 33 25 0 0 chr6 32751541 32751581 -156527973 + AT_rich Low_complexity Low_complexity 1 40 0 2109 117 21 0 chr6 32751584 32751874 -156527680 - AluSq SINE Alu -17 296 1 295 333 93 0 chr6 32754346 32754454 -156525100 + L2 LINE L2 3180 3297 -16 1007 226 25 25 chr6 32756022 32756159 -156523395 + ORSL DNA AcHobo 1 137 -138 2453 40 7 10 chr6 32756159 32756455 -156523099 + AluY SINE Alu 1 295 -16 1007 226 25 25 chr6 32756455 32756592 -156522962 + ORSL DNA AcHobo 136 275 0 2268 71 0 0 chr6 32758712 32759028 -156520526 - AluY SINE Alu 0 316 1 22 0 0 0 chr6 32759030 32759052 -156520502 + AT_rich Low_complexity Low_complexity 1 22 0 2127 200 41 30 chr6 32759381 32759846 -156519708 + MER90 LTR ERV1 5 474 -140 1088 245 39 57 chr6 32759850 32760234 -156519320 + MLT2C1 LTR ERVL 3 379 -18 647 223 8 0 chr6 32760234 32760364 -156519190 + MER90 LTR ERV1 443 573 -2 404 250 10 0 chr6 32760446 32760542 -156519012 - MIR SINE MIR -108 154 58 1953 79 0 86 chr6 32761257 32761561 -156517993 + AluSc SINE Alu 30 307 -2 25 51 0 0 chr6 32761905 32761944 -156517610 + AT_rich Low_complexity Low_complexity 1 39 0 184 316 51 51 chr6 32761971 32762129 -156517425 + MIR SINE MIR 79 236 -26 292 221 48 37 chr6 32762330 32762447 -156517107 - MLT1H LTR MaLR 0 530 435 941 202 27 6 chr6 32762452 32762635 -156516919 + MER20 DNA MER1_type 30 216 -3 368 258 31 0 chr6 32762672 32762769 -156516785 - L1MEc LINE L1 -4602 1794 1695 21 0 0 0 chr6 32763034 32763055 -156516499 + AT_rich Low_complexity Low_complexity 1 21 0 720 207 0 36 chr6 32763347 32763448 -156516106 + FLAM_A SINE Alu 1 97 -214 2240 140 6 48 chr6 32763448 32763806 -156515748 - MER61A LTR ERV1 0 343 1 720 207 0 36 chr6 32763806 32763844 -156515710 + FLAM_A SINE Alu 97 135 -176 606 244 61 29 chr6 32764322 32764766 -156514788 + L1MEc LINE L1 1865 2434 -3890 * 1307 103 47 0 chr6 32764744 32764958 -156514596 - L1M1 LINE L1 -4263 3302 3079 4296 58 4 0 chr6 32764960 32765491 -156514063 - L1PA7 LINE L1 -180 5974 5442 * 5471 95 3 0 chr6 32765483 32766230 -156513324 + L1P LINE L1 4221 4969 -1177 2836 142 33 3 chr6 32766441 32767112 -156512442 + L1P4 LINE L1 2300 5467 -701 529 61 0 0 chr6 32767111 32767177 -156512377 - L1P LINE L1 -1162 4984 4919 * 15176 127 43 5 chr6 32769275 32771598 -156507956 - Tigger1 DNA MER2_type -7 2411 1 293 304 24 12 chr6 32772795 32772963 -156506591 + CT-rich Low_complexity Low_complexity 2 171 0 234 163 0 0 chr6 32773076 32773125 -156506429 + L1MC4 LINE L1 6655 6703 -1339 219 267 48 27 chr6 32773217 32773363 -156506191 + (TCTCTG)n Simple_repeat Simple_repeat 2 150 0 308 309 21 10 chr6 32773521 32773618 -156505936 - MLT1K LTR MaLR -350 238 141 201 121 0 0 chr6 32773748 32773781 -156505773 + (TC)n Simple_repeat Simple_repeat 2 34 0 453 379 37 12 chr6 32774607 32774934 -156504620 + L2 LINE L2 2454 2788 -526 478 286 58 44 chr6 32775033 32775239 -156504315 - MLT1J2 LTR MaLR -2 448 240 322 289 102 24 chr6 32775252 32775483 -156504071 - MLT1J LTR MaLR -198 211 2 239 317 140 62 chr6 32775483 32775726 -156503828 + L2 LINE L2 2884 3145 -168 23 33 0 0 chr6 32776226 32776256 -156503298 + AT_rich Low_complexity Low_complexity 1 30 0 465 253 124 34 chr6 32776518 32776696 -156502858 + L2 LINE L2 3114 3307 -6 336 338 58 36 chr6 32776991 32777299 -156502255 - L1M4 LINE L1 -1760 4386 4072 189 0 0 0 chr6 32778213 32778234 -156501320 + (A)n Simple_repeat Simple_repeat 1 21 0 2700 26 7 0 chr6 32778527 32778835 -156500719 - AluY SINE Alu -1 310 1 351 373 64 16 chr6 32779182 32779496 -156500058 + L2 LINE L2 2846 3174 -139 267 31 0 0 chr6 32779936 32779968 -156499586 + (CA)n Simple_repeat Simple_repeat 2 33 0 2813 20 0 0 chr6 32780251 32780557 -156498997 + AluY SINE Alu 1 306 -5 300 49 49 0 chr6 32780756 32780797 -156498757 + THE1A LTR MaLR 3 45 -310 230 347 85 35 chr6 32780847 32781046 -156498508 + L2 LINE L2 2616 2824 -490 268 358 57 24 chr6 32781387 32781510 -156498044 + L2 LINE L2 3142 3268 -4 454 246 172 0 chr6 32782263 32782397 -156497157 - MIR SINE MIR -54 208 52 191 306 162 36 chr6 32782429 32782540 -156497014 + MIR3 SINE MIR 52 176 -32 599 326 101 0 chr6 32782869 32783047 -156496507 - MER91A DNA MER1_type 0 196 1 22 25 0 25 chr6 32783057 32783084 -156496470 + AT_rich Low_complexity Low_complexity 1 28 -11 2272 106 0 6 chr6 32783084 32783395 -156496159 - AluSx SINE Alu -3 309 1 22 25 0 25 chr6 32783395 32783407 -156496147 + AT_rich Low_complexity Low_complexity 28 39 0 1930 133 14 3 chr6 32783407 32783692 -156495862 - AluJo SINE Alu -24 288 1 2050 119 20 3 chr6 32783872 32784165 -156495389 - AluSg SINE Alu -12 298 1 218 216 20 20 chr6 32784695 32784746 -156494808 + L2 LINE L2 3263 3313 0 255 61 0 0 chr6 32786095 32786128 -156493426 + (GGA)n Simple_repeat Simple_repeat 1 33 0 509 252 41 27 chr6 32787282 32787429 -156492125 + MIR SINE MIR 16 164 -98 328 241 62 45 chr6 32787429 32787541 -156492013 + L1M4 LINE L1 5443 5556 -618 355 221 0 26 chr6 32787620 32787697 -156491857 + MIR SINE MIR 173 247 -15 568 178 0 10 chr6 32787956 32788057 -156491497 + MIR3 SINE MIR 81 180 -28 514 288 58 41 chr6 32788468 32789059 -156490495 - L1P2 LINE L1 -593 5561 4336 385 315 10 0 chr6 32789059 32789178 -156490376 + MIR SINE MIR 30 148 -62 216 313 0 0 chr6 32790954 32791018 -156488536 + (TG)n Simple_repeat Simple_repeat 2 65 0 2487 72 7 0 chr6 32791113 32791417 -156488137 - AluSx SINE Alu -6 306 1 1881 140 13 48 chr6 32791965 32792279 -156487275 + AluSx SINE Alu 1 303 -9 5137 124 22 2 chr6 32792307 32793095 -156486459 + L1PA15 LINE L1 5357 6159 -6 24 0 0 0 chr6 32793095 32793119 -156486435 + AT_rich Low_complexity Low_complexity 1 24 0 498 297 101 0 chr6 32794437 32794575 -156484979 + L2 LINE L2 3117 3268 -4 1231 259 37 25 chr6 32794936 32795291 -156484263 - MER21B LTR ERV1 -51 812 454 1163 124 88 0 chr6 32795291 32795485 -156484069 - L1MA5A LINE L1 -19 6278 6068 1475 219 119 29 chr6 32795501 32795922 -156483632 - MER21B LTR ERV1 -382 481 23 231 74 74 0 chr6 32795958 32796012 -156483542 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 205 281 122 0 chr6 32796630 32796712 -156482842 - MER5B DNA MER1_type -60 118 27 440 312 32 48 chr6 32796799 32796985 -156482569 + MER5A DNA MER1_type 1 183 -6 635 62 0 0 chr6 32798028 32798108 -156481446 + MADE1 DNA Mariner 1 80 0 442 208 17 42 chr6 32800611 32800731 -156478823 + MIR SINE MIR 142 258 -4 537 297 18 6 chr6 32800893 32801058 -156478496 - MIR SINE MIR -10 252 86 186 43 0 0 chr6 32801515 32801538 -156478016 + (TTTTTG)n Simple_repeat Simple_repeat 4 26 0 2297 106 3 6 chr6 32801630 32801942 -156477612 - AluSq SINE Alu -2 311 1 222 37 0 0 chr6 32802373 32802400 -156477154 + (TG)n Simple_repeat Simple_repeat 1 27 0 302 241 28 0 chr6 32802415 32802560 -156476994 + GA-rich Low_complexity Low_complexity 1 149 0 259 259 17 0 chr6 32802642 32802700 -156476854 - L3 LINE CR1 -16 1561 1503 460 301 78 25 chr6 32803380 32803808 -156475746 - LTR33 LTR ERVL -8 513 12 490 329 48 28 chr6 32803987 32804276 -156475278 - L1M4 LINE L1 -1534 4612 4318 3541 168 18 6 chr6 32804280 32804946 -156474608 - L1MB2 LINE L1 -7 6164 5491 373 157 0 22 chr6 32804947 32805036 -156474518 + CT-rich Low_complexity Low_complexity 3 89 0 717 192 41 48 chr6 32805036 32805302 -156474252 - L1MB2 LINE L1 -682 5489 5225 424 323 135 17 chr6 32805319 32805398 -156474156 - L1M4 LINE L1 -1805 4341 4273 210 118 0 0 chr6 32805398 32805432 -156474122 + (TTG)n Simple_repeat Simple_repeat 1 34 0 424 323 135 17 chr6 32805432 32805640 -156473914 - L1M4 LINE L1 -1873 4273 4020 4126 157 67 48 chr6 32805641 32806343 -156473211 - L1MD1 LINE L1 -30 6606 5919 2445 74 0 0 chr6 32806343 32806641 -156472913 - AluY SINE Alu -13 298 1 4126 157 67 48 chr6 32806641 32806839 -156472715 - L1MD1 LINE L1 -717 5919 5726 1627 126 152 4 chr6 32806839 32807102 -156472452 - AluSx SINE Alu 0 302 1 4126 157 67 48 chr6 32807102 32807424 -156472130 - L1MD1 LINE L1 -910 5726 5360 306 148 23 45 chr6 32807565 32807653 -156471901 - L1MD1 LINE L1 -2868 3672 3587 1841 149 0 4 chr6 32807653 32807928 -156471626 - AluSx SINE Alu -38 274 1 232 219 96 0 chr6 32807928 32808001 -156471553 - L1MD1 LINE L1 -3020 3520 3441 669 88 0 39 chr6 32808007 32808109 -156471445 - FLAM_A SINE Alu -12 130 33 354 179 0 0 chr6 32808116 32808194 -156471360 - L1MD1 LINE L1 -3106 3434 3357 6773 97 11 18 chr6 32808212 32809038 -156470516 - L1MA1 LINE L1 -7 6295 5477 2231 107 0 0 chr6 32809038 32809329 -156470225 - AluSx SINE Alu -21 291 1 6773 97 11 18 chr6 32809329 32809610 -156469944 - L1MA1 LINE L1 -825 5477 5196 940 199 45 14 chr6 32809614 32809900 -156469654 - L1MD1 LINE L1 -3177 3363 3069 * 3613 137 60 26 chr6 32809874 32810562 -156468992 + L1PA15 LINE L1 5342 6052 -113 1539 208 22 96 chr6 32810576 32810871 -156468683 - L1M4 LINE L1 -3311 2835 2612 2362 65 7 10 chr6 32810871 32811181 -156468373 - AluY SINE Alu -2 309 1 1539 208 22 96 chr6 32811181 32811529 -156468025 - L1M4 LINE L1 -3534 2612 2240 1853 144 44 13 chr6 32811541 32811839 -156467715 - AluSx SINE Alu -5 307 1 226 43 0 65 chr6 32811862 32811908 -156467646 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 241 158 0 0 chr6 32811912 32811950 -156467604 - Alu SINE Alu -262 38 1 729 199 6 0 chr6 32812021 32812177 -156467377 - L1MA3 LINE L1 -2 6303 6147 980 197 35 102 chr6 32812191 32812562 -156466992 - MLT1A2 LTR MaLR -11 363 18 2153 141 72 27 chr6 32812582 32813093 -156466461 - L1MD1 LINE L1 -4019 2521 1988 2405 204 29 50 chr6 32813129 32813711 -156465843 - L1MD1 LINE L1 -5945 595 26 290 308 45 24 chr6 32813724 32814059 -156465495 - L1MEd LINE L1 -2143 4397 4056 475 258 99 22 chr6 32814136 32814450 -156465104 - L1MEd LINE L1 -2929 3611 3274 299 171 198 36 chr6 32814465 32814576 -156464978 - L1MC4 LINE L1 0 8042 7914 739 239 42 35 chr6 32814709 32814998 -156464556 - L1MC4 LINE L1 -167 7875 7585 349 304 0 6 chr6 32815089 32815250 -156464304 - L1MEd LINE L1 -3562 2978 2819 2348 109 0 6 chr6 32815297 32815610 -156463944 - AluSq SINE Alu -2 311 1 2025 134 3 0 chr6 32815643 32815966 -156463588 + AluSq SINE Alu 1 324 0 2127 105 7 24 chr6 32815973 32816269 -156463285 + AluSx SINE Alu 1 291 -21 7272 166 21 0 chr6 32816409 32817121 -156462433 + L1PA13 LINE L1 3943 4638 -1525 2095 96 3 14 chr6 32817121 32817414 -156462140 - AluSp SINE Alu -23 290 1 7272 166 21 0 chr6 32817414 32818914 -156460640 + L1PA13 LINE L1 4638 6158 -5 296 325 63 0 chr6 32819481 32819672 -156459882 - HAL1 LINE L1 -854 1653 1451 1421 99 59 36 chr6 32819703 32819925 -156459629 - AluSx SINE Alu -83 229 3 455 329 93 33 chr6 32819965 32820427 -156459127 - L1MEd LINE L1 -4841 1699 1226 234 0 0 0 chr6 32822237 32822263 -156457291 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 440 296 51 34 chr6 32823796 32823972 -156455582 + MER5A DNA MER1_type 8 186 -3 2354 93 0 0 chr6 32824202 32824503 -156455051 - AluSg SINE Alu -9 301 1 365 253 11 0 chr6 32824931 32825018 -156454536 - Charlie7 DNA MER1_type -2520 92 5 299 390 19 0 chr6 32825552 32825657 -156453897 + L2 LINE L2 3149 3255 -17 296 330 26 35 chr6 32825856 32825971 -156453583 - MIR3 SINE MIR -27 181 68 315 0 0 0 chr6 32826477 32826512 -156453042 + (TA)n Simple_repeat Simple_repeat 1 35 0 464 353 55 48 chr6 32826752 32827152 -156452402 - L1ME3A LINE L1 -300 5870 5468 282 289 13 13 chr6 32827161 32827310 -156452244 - L1ME3A LINE L1 -1088 5058 4910 5237 170 56 46 chr6 32827322 32829232 -156450322 + Charlie1 DNA MER1_type 1 2056 -705 1598 189 3 17 chr6 32829232 32829523 -156450031 - AluJo SINE Alu -23 289 3 5237 170 56 46 chr6 32829523 32829674 -156449880 + Charlie1 DNA MER1_type 2056 2204 -557 1691 160 35 0 chr6 32829973 32830260 -156449294 - AluJb SINE Alu -15 297 1 276 338 39 32 chr6 32830310 32830464 -156449090 + L2 LINE L2 2919 3073 -199 1045 160 142 50 chr6 32831193 32831474 -156448080 + MER44D DNA MER2_type 14 590 -19 1067 199 109 23 chr6 32831528 32831848 -156447706 - MSTD LTR MaLR 0 396 1 2659 105 55 36 chr6 32833043 32833519 -156446035 - L1MC2 LINE L1 -13 6331 5847 734 179 0 82 chr6 32833519 32833703 -156445851 + MER20 DNA MER1_type 51 219 0 * 997 240 103 65 chr6 32833703 32833900 -156445654 + Charlie2b DNA MER1_type 407 595 -2187 665 191 0 59 chr6 32833900 32834036 -156445518 - FLAM_A SINE Alu -1 132 5 997 240 103 65 chr6 32834036 32834252 -156445302 + Charlie2b DNA MER1_type 595 836 -1946 421 173 0 0 chr6 32834300 32834375 -156445179 - AluJ/FLAM SINE Alu -237 75 1 3679 212 95 45 chr6 32834375 32835660 -156443894 + Charlie2b DNA MER1_type 829 2047 -815 1635 157 132 0 chr6 32835660 32835979 -156443575 + MER46B DNA MER2_type 1 236 0 3679 212 95 45 chr6 32835979 32836034 -156443520 + Charlie2b DNA MER1_type 2047 2098 -764 1873 133 7 40 chr6 32836034 32836334 -156443220 - AluJb SINE Alu -22 290 1 3679 212 95 45 chr6 32836334 32836826 -156442728 + Charlie2b DNA MER1_type 2098 2759 -23 559 193 76 10 chr6 32838826 32839094 -156440460 - MER69 DNA AcHobo -1696 830 505 203 308 0 31 chr6 32840789 32840854 -156438700 + G-rich Low_complexity Low_complexity 3 65 0 2055 114 0 0 chr6 32841265 32841554 -156438000 - AluSx SINE Alu -18 294 6 453 198 0 41 chr6 32841748 32841869 -156437685 - MER112 DNA MER1_type -78 182 67 2578 127 18 34 chr6 32842932 32843156 -156436398 + Tigger2a DNA MER2_type 1 216 -2492 1815 151 24 0 chr6 32843156 32843447 -156436107 - AluJo SINE Alu -14 298 1 2578 127 18 34 chr6 32843447 32843663 -156435891 + Tigger2a DNA MER2_type 216 434 0 431 274 124 56 chr6 32843663 32844471 -156435083 + L1ME3 LINE L1 4411 5273 -873 894 306 37 16 chr6 32844472 32845061 -156434493 + L1ME3 LINE L1 5305 5905 -257 2014 157 3 0 chr6 32845592 32845898 -156433656 + AluJb SINE Alu 2 308 -4 1413 236 39 33 chr6 32845991 32846381 -156433173 - MSTD LTR MaLR 0 396 5 254 28 0 28 chr6 32846817 32846853 -156432701 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 457 57 14 14 chr6 32848733 32848803 -156430751 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 2433 65 0 3 chr6 32849250 32849543 -156430011 + AluY SINE Alu 1 292 -19 755 161 44 7 chr6 32849867 32850004 -156429550 + FLAM_C SINE Alu 2 143 0 947 195 0 0 chr6 32850020 32850200 -156429354 + AluJb SINE Alu 129 308 0 710 267 117 6 chr6 32850783 32851166 -156428388 - LTR16C LTR ERVL -4 487 37 2056 165 43 8 chr6 32851412 32851787 -156427767 - MLT1B LTR MaLR 0 390 3 228 240 13 40 chr6 32852043 32852118 -156427436 - Charlie2 DNA MER1_type -9 2853 2781 1402 160 24 86 chr6 32852119 32852456 -156427098 - L1MD1 LINE L1 -11 6231 5916 2145 123 10 0 chr6 32852484 32852792 -156426762 - AluSx SINE Alu -1 311 1 434 217 43 0 chr6 32852796 32852911 -156426643 - L1M4 LINE L1 -1031 5509 5390 522 167 0 0 chr6 32852911 32853001 -156426553 - AluJ/FRAM SINE Alu -3 309 220 3388 152 26 86 chr6 32853001 32853480 -156426074 - L1MD1 LINE L1 -336 5906 5400 2255 108 7 0 chr6 32853480 32853777 -156425777 - AluSp SINE Alu -14 299 1 3388 152 26 86 chr6 32853777 32854327 -156425227 - L1MD1 LINE L1 -842 5400 4932 1514 151 8 4 chr6 32854327 32854566 -156424988 - AluJo SINE Alu -15 297 58 1074 222 6 88 chr6 32854566 32854918 -156424636 - L1MDa LINE L1 -1145 5395 5073 2663 48 0 10 chr6 32856277 32856591 -156422963 + AluY SINE Alu 1 311 0 8307 202 71 59 chr6 32858515 32858845 -156420709 - L1MDa LINE L1 -1455 5085 4760 2610 49 20 0 chr6 32858845 32859150 -156420404 + AluY SINE Alu 1 311 0 8307 202 71 59 chr6 32859150 32860463 -156419091 - L1MDa LINE L1 -1780 4760 3464 5818 62 8 0 chr6 32860463 32861192 -156418362 + L1PA10 LINE L1 5417 6151 -17 8307 202 71 59 chr6 32861192 32861509 -156418045 - L1MDa LINE L1 -3076 3464 3152 2199 112 30 7 chr6 32861509 32861631 -156417923 + AluSq SINE Alu 1 119 -194 351 0 0 0 chr6 32861631 32861670 -156417884 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2199 112 30 7 chr6 32861670 32861842 -156417712 + AluSq SINE Alu 119 302 -11 2665 66 28 0 chr6 32861852 32862214 -156417340 + L1PA13 LINE L1 5792 6163 0 8307 202 71 59 chr6 32862214 32862718 -156416836 - L1MDa LINE L1 -3396 3144 2647 2164 96 10 36 chr6 32862718 32863021 -156416533 - AluSc SINE Alu -13 296 2 8307 202 71 59 chr6 32863021 32865189 -156414365 - L1MDa LINE L1 -3893 2647 379 1322 167 9 17 chr6 32865189 32865422 -156414132 - AluJo SINE Alu -40 272 42 568 206 46 0 chr6 32865427 32865558 -156413996 - Charlie2 DNA MER1_type -871 1991 1855 495 207 117 27 chr6 32867262 32867450 -156412104 + LTR37B LTR ERV1 199 403 -65 192 77 0 0 chr6 32867693 32867719 -156411835 + (A)n Simple_repeat Simple_repeat 1 26 0 565 267 67 33 chr6 32867837 32868017 -156411537 - LTR67 LTR ERVL -366 191 6 438 192 0 64 chr6 32868077 32868190 -156411364 + MLT1H1 LTR MaLR 437 555 0 531 232 30 24 chr6 32868190 32868358 -156411196 - L1ME3 LINE L1 -251 5911 5743 514 281 15 10 chr6 32868355 32868551 -156411003 - L1MC4 LINE L1 -144 7898 7702 * 278 161 177 16 chr6 32868557 32868619 -156410935 + MLT1F1 LTR MaLR 495 566 -1 253 296 60 55 chr6 32868699 32868898 -156410656 - HERV16 LTR ERVL -4422 574 375 2616 129 43 0 chr6 32869205 32869601 -156409953 + MLT2D LTR ERVL 2 414 0 1113 164 14 51 chr6 32870293 32870507 -156409047 - AluJo SINE Alu -16 296 91 287 293 93 46 chr6 32870569 32870828 -156408726 - L1M4 LINE L1 -2095 4051 3781 195 139 0 0 chr6 32870828 32870864 -156408690 + (TTA)n Simple_repeat Simple_repeat 3 38 0 1664 135 0 39 chr6 32870869 32871128 -156408426 - AluJo SINE Alu -24 288 40 1034 284 39 46 chr6 32871128 32871916 -156407638 - L1M4 LINE L1 -2359 3787 3005 583 192 0 0 chr6 32871995 32872099 -156407455 - AluJb SINE Alu -19 293 190 1867 151 44 0 chr6 32872224 32872522 -156407032 - AluJb SINE Alu -1 311 1 431 240 97 77 chr6 32872763 32872959 -156406595 + MER63A DNA MER1_type 10 209 -1 2293 84 27 3 chr6 32873180 32873478 -156406076 - AluSq SINE Alu -8 305 1 443 280 58 78 chr6 32873497 32873943 -156405611 - L1ME LINE L1 -5583 487 51 200 261 77 0 chr6 32874143 32874208 -156405346 - MIR3 SINE MIR -12 196 127 270 292 133 9 chr6 32874419 32874532 -156405022 + MIR SINE MIR 48 174 -88 2014 135 3 7 chr6 32874550 32874847 -156404707 - AluJo SINE Alu 0 312 17 381 272 152 38 chr6 32875713 32875897 -156403657 + MER63A DNA MER1_type 2 206 -4 1803 162 0 53 chr6 32875912 32876233 -156403321 - AluJb SINE Alu -7 305 2 268 278 0 111 chr6 32876251 32876395 -156403159 - MER94 DNA DNA -4 130 3 267 177 32 0 chr6 32877389 32877451 -156402103 - MIR SINE MIR -79 183 120 2148 122 10 3 chr6 32877765 32878069 -156401485 - AluSx SINE Alu -6 306 1 293 192 192 8 chr6 32878859 32878979 -156400575 - MIR3 SINE MIR -4 204 63 465 241 154 25 chr6 32879621 32879783 -156399771 - MIR3 SINE MIR -24 184 2 321 82 0 0 chr6 32883014 32883063 -156396491 + (TC)n Simple_repeat Simple_repeat 1 49 0 441 219 48 70 chr6 32883197 32883384 -156396170 - MIR3 SINE MIR -5 203 21 231 114 0 0 chr6 32885181 32885216 -156394338 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2309 64 0 34 chr6 32885232 32885528 -156394026 - AluY SINE Alu -25 286 1 227 264 0 0 chr6 32887684 32887737 -156391817 + (TG)n Simple_repeat Simple_repeat 1 53 0 1959 162 10 0 chr6 32888142 32888450 -156391104 - AluJb SINE Alu -1 311 1 914 126 0 0 chr6 32888521 32888648 -156390906 - FLAM_C SINE Alu -16 127 1 506 288 34 39 chr6 32888684 32888889 -156390665 - MIR SINE MIR -56 206 3 272 285 109 0 chr6 32891470 32891618 -156387936 + MIR SINE MIR 44 205 -57 1695 100 0 0 chr6 32893530 32893750 -156385804 + AluSg/x SINE Alu 81 300 -12 2415 68 0 3 chr6 32895567 32895862 -156383692 - AluSq SINE Alu -19 294 1 180 0 0 0 chr6 32896503 32896523 -156383031 + (T)n Simple_repeat Simple_repeat 1 20 0 332 164 0 60 chr6 32898003 32898070 -156381484 + MER96 DNA MER1_type? 2 64 -111 2174 145 31 0 chr6 32898191 32898515 -156381039 + MER7A DNA MER2_type 1 332 -14 301 170 19 0 chr6 32899962 32900015 -156379539 - L1M3 LINE L1 -376 5795 5742 5161 166 40 20 chr6 32900309 32900909 -156378645 - L1MB3 LINE L1 0 6183 5596 2285 130 75 20 chr6 32900909 32901254 -156378300 - THE1B LTR MaLR 0 364 1 5161 166 40 20 chr6 32901254 32901838 -156377716 - L1MB3 LINE L1 -587 5596 4986 1358 202 27 60 chr6 32902785 32903231 -156376323 - L1MC5 LINE L1 -48 7913 7483 180 77 0 0 chr6 32903231 32903257 -156376297 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 1584 217 50 39 chr6 32903281 32903738 -156375816 - L1MC5 LINE L1 -488 7473 7012 300 360 64 23 chr6 32903777 32903949 -156375605 - L2 LINE L2 -15 3257 3079 198 0 0 0 chr6 32906290 32906312 -156373242 + (GGGTG)n Simple_repeat Simple_repeat 3 24 0 437 237 53 8 chr6 32906428 32906559 -156372995 - L1ME4a LINE L1 -23 6098 5962 872 243 74 8 chr6 32906717 32906960 -156372594 - MIR SINE MIR -2 260 2 231 308 94 97 chr6 32907248 32907661 -156371893 + L2 LINE L2 2861 3272 0 193 220 294 28 chr6 32908188 32908297 -156371257 - MIR3 SINE MIR -10 198 61 449 299 43 27 chr6 32909004 32909191 -156370363 - MIR SINE MIR -7 255 66 327 222 12 0 chr6 32909193 32909274 -156370280 + L2 LINE L2 1756 1837 -1477 247 260 40 30 chr6 32909277 32909377 -156370177 - L1MC4a LINE L1 -1633 6175 6075 22 0 0 0 chr6 32909532 32909554 -156370000 + AT_rich Low_complexity Low_complexity 1 22 0 858 283 65 40 chr6 32909554 32909953 -156369601 - L1ME4a LINE L1 -1996 5812 5404 24 67 0 0 chr6 32910326 32910371 -156369183 + AT_rich Low_complexity Low_complexity 1 45 0 276 309 104 30 chr6 32910457 32910891 -156368663 + L1M4 LINE L1 2135 2600 -3546 216 0 0 0 chr6 32911535 32911559 -156367995 + (A)n Simple_repeat Simple_repeat 1 24 0 2276 116 0 0 chr6 32911765 32912067 -156367487 + AluSx SINE Alu 1 302 -10 1831 139 33 0 chr6 32912154 32912452 -156367102 + AluJo SINE Alu 1 307 0 349 273 75 0 chr6 32912485 32912646 -156366908 + L1P LINE L1 3634 3806 -2340 337 212 162 10 chr6 32914064 32914163 -156365391 + MIR SINE MIR 72 185 -77 633 173 32 0 chr6 32915704 32915833 -156363721 - MLT1A1 LTR MaLR 0 457 236 204 40 0 0 chr6 32916181 32916206 -156363348 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1386 207 4 22 chr6 32916206 32916481 -156363073 - AluJo SINE Alu -32 280 11 776 173 73 0 chr6 32916490 32916640 -156362914 - MLT1A1 LTR MaLR -204 161 1 1819 139 24 0 chr6 32916760 32917054 -156362500 - L1MA6 LINE L1 -224 6076 5776 729 109 0 0 chr6 32917054 32917153 -156362401 + L1MA6 LINE L1 6195 6295 -5 625 151 63 32 chr6 32918389 32918515 -156361039 - LTR42 LTR ERVL -340 155 26 208 328 17 0 chr6 32919159 32919217 -156360337 + L2 LINE L2 3001 3059 -213 233 289 107 44 chr6 32922189 32922348 -156357206 - L1ME3A LINE L1 -37 6133 5965 2490 194 47 112 chr6 32922418 32923328 -156356226 - L1MC5 LINE L1 -436 7525 6678 3144 137 35 12 chr6 32923328 32923810 -156355744 - LTR42 LTR ERVL 0 495 3 2490 194 47 112 chr6 32923810 32923853 -156355701 - L1MC5 LINE L1 -1283 6678 6634 2298 91 0 0 chr6 32923894 32924180 -156355374 + AluSc SINE Alu 3 288 -21 5495 199 60 24 chr6 32924571 32925923 -156353631 + Charlie1a DNA MER1_type 3 1439 -16 1694 193 46 9 chr6 32926001 32926348 -156353206 - MLT1A1 LTR MaLR 0 365 6 230 303 133 28 chr6 32926369 32926580 -156352974 - L1M4c LINE L1 -4740 1644 1412 18358 191 30 14 chr6 32926587 32930656 -156348898 + L1PA13 LINE L1 1 4190 -2607 279 0 0 0 chr6 32930656 32930687 -156348867 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 18358 191 30 14 chr6 32930687 32931836 -156347718 + L1PA13 LINE L1 4190 5319 -1478 2434 174 71 6 chr6 32931825 32932665 -156346889 + L1MD1 LINE L1 5350 6239 -3 * 472 222 96 7 chr6 32932761 32932896 -156346658 - L1M4 LINE L1 -1008 5138 4992 * 1146 202 54 4 chr6 32932890 32933148 -156346406 - L1M4 LINE L1 -1946 4200 3930 2299 103 0 3 chr6 32934208 32934509 -156345045 + AluY SINE Alu 12 311 0 35 54 0 0 chr6 32934528 32934584 -156344970 + AT_rich Low_complexity Low_complexity 1 56 0 1042 218 159 37 chr6 32934616 32934942 -156344612 + Tigger5 DNA MER2_type 1 2323 0 366 366 0 7 chr6 32935022 32935164 -156344390 - MIR SINE MIR -114 148 8 2185 184 62 44 chr6 32935178 32935287 -156344267 - MLT1D LTR MaLR 0 505 399 1177 264 101 10 chr6 32935287 32935685 -156343869 + MER57B LTR ERV1 1 434 0 2185 184 62 44 chr6 32935685 32936071 -156343483 - MLT1D LTR MaLR -106 399 1 346 347 66 26 chr6 32936192 32936570 -156342984 + L2 LINE L2 2459 2851 -463 210 286 200 0 chr6 32938037 32938142 -156341412 + MIR SINE MIR 11 136 -126 691 167 42 22 chr6 32938143 32938358 -156341196 - AluJb SINE Alu -18 294 4 192 238 0 0 chr6 32938368 32938410 -156341144 + MIR SINE MIR 205 246 -16 27 0 0 0 chr6 32938410 32938437 -156341117 + AT_rich Low_complexity Low_complexity 1 27 0 1539 100 132 24 chr6 32938569 32938862 -156340692 + AluSx SINE Alu 6 325 0 248 226 98 98 chr6 32939023 32939187 -156340367 - L1MCc LINE L1 -5997 426 263 258 300 50 17 chr6 32939266 32939386 -156340168 - L1MCc LINE L1 -6283 140 17 4022 182 72 25 chr6 32941604 32942379 -156337175 + MER21B LTR ERV1 1 812 -51 628 176 0 73 chr6 32942449 32942585 -156336969 + FLAM_C SINE Alu 12 137 -6 1721 155 24 17 chr6 32943696 32943987 -156335567 - AluJo SINE Alu -19 293 1 381 284 115 0 chr6 32944281 32944429 -156335125 + L2 LINE L2 2825 2989 -324 289 309 41 16 chr6 32944452 32944575 -156334979 + L2 LINE L2 3179 3304 -9 352 235 107 7 chr6 32945437 32945586 -156333968 + MIR SINE MIR 74 237 -25 39 38 0 38 chr6 32945617 32945662 -156333892 + AT_rich Low_complexity Low_complexity 1 43 -33 6335 72 16 5 chr6 32945662 32947447 -156332107 - L1PA11 LINE L1 -5 6169 4368 39 38 0 38 chr6 32947447 32947480 -156332074 + AT_rich Low_complexity Low_complexity 43 76 0 194 330 70 35 chr6 32947850 32947965 -156331589 - MIR SINE MIR -60 202 84 1207 44 0 0 chr6 32948332 32948468 -156331086 - AluSq/x SINE Alu -177 136 1 225 220 9 73 chr6 32949624 32949733 -156329821 + L1MCa LINE L1 1400 1501 -4925 238 223 176 7 chr6 32949841 32949989 -156329565 + L1M4 LINE L1 5227 5399 -747 405 245 87 72 chr6 32950355 32950563 -156328991 - L2 LINE L2 0 3313 3103 379 256 37 30 chr6 32951539 32951703 -156327851 + L1MCa LINE L1 2428 2592 -3834 4111 194 35 17 chr6 32951763 32952587 -156326967 - L1P LINE L1 -3848 2298 1460 4524 97 10 0 chr6 32952587 32953188 -156326366 + L1PA13 LINE L1 5557 6163 0 2707 39 0 0 chr6 32953191 32953500 -156326054 + AluY SINE Alu 1 309 -2 882 125 0 0 chr6 32953589 32953709 -156325845 - MSTB LTR MaLR -299 127 8 692 225 19 43 chr6 32953719 32953928 -156325626 + L1MDa LINE L1 2190 2393 -4147 1351 206 152 51 chr6 32954454 32954843 -156324711 + MSTC LTR MaLR 1 428 0 5522 237 97 51 chr6 32954845 32955920 -156323634 + MSTC-int LTR MaLR 2 1182 -553 8463 51 1 0 chr6 32955920 32956888 -156322666 + LTR5 LTR ERVK 1 969 0 5522 237 97 51 chr6 32956888 32957469 -156322085 + MSTC-int LTR MaLR 1182 1735 0 1534 219 98 23 chr6 32957469 32957867 -156321687 + MSTC LTR MaLR 1 428 0 2092 97 0 8 chr6 32957893 32958160 -156321394 + AluSx SINE Alu 26 290 -22 404 250 75 8 chr6 32958625 32958745 -156320809 + MLT1E3-int LTR MaLR 1603 1730 -5 1978 222 69 49 chr6 32958761 32958856 -156320698 + MLT1E3 LTR MaLR 4 96 -528 3418 109 45 52 chr6 32958856 32959371 -156320183 - MER9 LTR ERVK 0 511 1 1978 222 69 49 chr6 32959371 32959884 -156319670 + MLT1E3 LTR MaLR 96 624 0 27 49 0 0 chr6 32960062 32960103 -156319451 + AT_rich Low_complexity Low_complexity 1 41 0 2007 124 10 3 chr6 32960103 32960402 -156319152 - LTR43 LTR ERV1 0 602 302 1748 125 30 106 chr6 32961100 32961467 -156318087 + MER44D DNA MER2_type 1 609 0 21 0 0 0 chr6 32962015 32962036 -156317518 + AT_rich Low_complexity Low_complexity 1 21 0 344 315 31 31 chr6 32962719 32962881 -156316673 - MLT1J2 LTR MaLR 0 450 289 263 320 77 34 chr6 32963015 32963249 -156316305 - ERVL LTR ERVL -384 5380 5137 1580 167 106 73 chr6 32963494 32963785 -156315769 + MER4A LTR ERV1 1 183 -282 2286 105 0 22 chr6 32963785 32964100 -156315454 - AluSx SINE Alu -4 308 1 1580 167 106 73 chr6 32964100 32964372 -156315182 + MER4A LTR ERV1 183 444 -21 1638 168 9 87 chr6 32964520 32964854 -156314700 + MER70B LTR ERVL 271 578 0 745 269 40 4 chr6 32964856 32965109 -156314445 + L1MCa LINE L1 932 1193 -5233 1315 205 51 18 chr6 32965126 32965430 -156314124 + AluJo SINE Alu 2 314 0 308 250 11 23 chr6 32965455 32965543 -156314011 - L1MCa LINE L1 -5202 1224 1138 745 169 58 35 chr6 32965592 32965764 -156313790 - L1MD2 LINE L1 -1 6358 6183 * 1631 198 14 9 chr6 32965722 32966070 -156313484 + L1M4 LINE L1 4817 5166 -980 1667 138 0 46 chr6 32966070 32966352 -156313202 + L1PB3 LINE L1 5882 6150 -4 22 0 0 0 chr6 32966352 32966374 -156313180 + AT_rich Low_complexity Low_complexity 1 22 0 436 292 58 7 chr6 32966374 32966511 -156313043 - MIR SINE MIR -15 247 104 234 186 0 0 chr6 32966540 32966583 -156312971 - L2 LINE L2 -661 2653 2611 941 199 68 38 chr6 32966656 32966971 -156312583 + MER4C LTR ERV1 276 465 0 2342 164 17 0 chr6 32966972 32967374 -156312180 - L1MA7 LINE L1 -459 5832 5424 1944 134 3 40 chr6 32968959 32969280 -156310274 - AluSq SINE Alu -4 309 1 1805 185 3 10 chr6 32969352 32969666 -156309888 + AluJo SINE Alu 1 312 0 1979 231 118 4 chr6 32970365 32970867 -156308687 + Zaphod DNA AcHobo 89 647 -3384 203 360 11 11 chr6 32970867 32970956 -156308598 - MIR SINE MIR -62 146 58 197 321 75 25 chr6 32972174 32972333 -156307221 - MIR SINE MIR -6 256 90 239 324 108 0 chr6 32973874 32973976 -156305578 + L2 LINE L2 3201 3313 0 215 316 25 13 chr6 32975570 32975649 -156303905 + L2 LINE L2 3175 3254 -59 597 113 0 0 chr6 32976299 32976379 -156303175 - MSTB LTR MaLR 0 426 347 1906 185 72 5 chr6 32976379 32976769 -156302785 - MSTA LTR MaLR -12 416 1 1427 116 10 0 chr6 32977713 32977911 -156301643 + AluSg/x SINE Alu 98 297 -15 1869 209 75 64 chr6 33078824 33079282 -156200272 + MLT1E3 LTR MaLR 87 553 -71 1370 207 37 34 chr6 33079282 33079577 -156199977 + AluJo SINE Alu 1 296 -16 1869 209 75 64 chr6 33079577 33079650 -156199904 + MLT1E3 LTR MaLR 553 624 0 206 204 0 0 chr6 33079773 33079822 -156199732 - L2 LINE L2 0 3313 3265 203 269 39 0 chr6 33079870 33079922 -156199632 - L2 LINE L2 -553 2761 2708 233 151 0 38 chr6 33082085 33082138 -156197416 + G-rich Low_complexity Low_complexity 3 53 0 3755 182 64 45 chr6 33084935 33085871 -156193683 - LTR13 LTR ERVK 0 954 1 204 40 0 0 chr6 33086337 33086362 -156193192 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 217 304 11 43 chr6 33086406 33086498 -156193056 + L3 LINE CR1 934 1022 -555 418 128 0 1 chr6 33086628 33086712 -156192842 - MER30 DNA MER1_type 0 230 140 370 287 89 19 chr6 33087122 33087279 -156192275 + ERVL LTR ERVL 1989 2156 -3608 330 143 0 0 chr6 33087744 33087793 -156191761 + MLT1F LTR MaLR 491 539 -3 2487 87 3 0 chr6 33087903 33088274 -156191280 - AluY SINE Alu 0 372 1 231 252 19 9 chr6 33088346 33088453 -156191101 + CT-rich Low_complexity Low_complexity 3 110 0 406 303 129 16 chr6 33088692 33089002 -156190552 + L1ME3A LINE L1 5528 5872 -298 287 104 21 0 chr6 33089086 33089134 -156190420 + (TA)n Simple_repeat Simple_repeat 1 49 0 3486 118 24 4 chr6 33089200 33089700 -156189854 - MER9 LTR ERVK 0 511 2 6412 84 16 10 chr6 33090530 33091529 -156188025 + L1PA10 LINE L1 5164 6163 -5 2109 222 44 28 chr6 33091617 33091716 -156187838 + MLT1F1 LTR MaLR 6 102 -465 2205 152 5 24 chr6 33091716 33092098 -156187456 + THE1C LTR MaLR 1 375 0 2109 222 44 28 chr6 33092098 33092543 -156187011 + MLT1F1 LTR MaLR 102 559 -8 1430 218 25 0 chr6 33092620 33092900 -156186654 - AluJo SINE Alu -25 287 1 1841 224 96 46 chr6 33093063 33093349 -156186205 + MLT1E3 LTR MaLR 3 273 -351 2233 91 16 10 chr6 33093349 33093657 -156185897 + AluY SINE Alu 1 310 -1 1841 224 96 46 chr6 33093657 33093914 -156185640 + MLT1E3 LTR MaLR 273 573 -51 207 250 39 0 chr6 33094146 33094198 -156185356 - L2 LINE L2 -553 2761 2708 208 254 30 0 chr6 33094309 33094376 -156185178 + GA-rich Low_complexity Low_complexity 1 69 0 408 108 0 60 chr6 33095339 33095407 -156184147 + AluSc SINE Alu 232 296 -13 2230 112 0 6 chr6 33095407 33095719 -156183835 + AluY SINE Alu 1 310 -1 408 108 0 60 chr6 33095719 33095733 -156183821 + AluSc SINE Alu 296 309 0 1603 278 44 19 chr6 33096641 33097232 -156182322 - L1MC4a LINE L1 -1870 5938 5333 418 301 107 31 chr6 33097286 33097971 -156181583 - L1MC4a LINE L1 -798 5348 4612 2247 101 7 0 chr6 33097975 33098271 -156181283 + AluSq SINE Alu 1 298 -15 544 268 125 51 chr6 33098578 33098914 -156180640 - MLT1J1 LTR MaLR -26 420 60 333 157 57 0 chr6 33099888 33099958 -156179596 - MLT1D LTR MaLR -1 504 431 35 24 0 0 chr6 33099958 33100000 -156179554 + AT_rich Low_complexity Low_complexity 1 42 0 2154 201 26 44 chr6 33100000 33100458 -156179096 - MLT1D LTR MaLR -55 450 1 1659 230 9 15 chr6 33100629 33101040 -156178514 + L1ME1 LINE L1 5723 6276 -36 3266 118 0 2 chr6 33101040 33101498 -156178056 + L1PA15 LINE L1 5709 6165 0 272 122 20 0 chr6 33101735 33101784 -156177770 + L1MA10 LINE L1 6278 6327 -7 405 260 39 0 chr6 33101840 33101944 -156177610 + L2 LINE L2 3187 3294 -19 1229 246 77 30 chr6 33101955 33102460 -156177094 + MLT1E2 LTR MaLR 1 436 -69 519 260 121 55 chr6 33102812 33103085 -156176469 + LTR43 LTR ERV1 187 477 -125 520 153 29 18 chr6 33103133 33103251 -156176303 + MLT1E2 LTR MaLR 431 626 0 2987 138 74 25 chr6 33103455 33103604 -156175950 + MER41C LTR ERV1 1 141 -413 1922 131 14 0 chr6 33103604 33103894 -156175660 + AluSg SINE Alu 1 294 -16 2987 138 74 25 chr6 33103894 33104078 -156175476 + MER41C LTR ERV1 141 314 -240 227 53 0 26 chr6 33104078 33104116 -156175438 + (TA)n Simple_repeat Simple_repeat 2 38 0 2987 138 74 25 chr6 33104116 33104309 -156175245 + MER41C LTR ERV1 314 554 0 481 211 11 0 chr6 33104411 33104501 -156175053 - MER81 DNA DNA 0 114 24 210 348 89 0 chr6 33104719 33104831 -156174723 - MER5A DNA MER1_type 0 189 68 1730 241 77 65 chr6 33104887 33105722 -156173832 + L2 LINE L2 2305 3153 -160 2118 97 0 7 chr6 33105722 33106012 -156173542 - AluSc SINE Alu -19 290 3 1730 241 77 65 chr6 33106012 33106175 -156173379 + L2 LINE L2 3153 3313 0 1232 278 43 63 chr6 33106189 33106355 -156173199 + L1ME3 LINE L1 4860 5028 -1134 1952 172 22 11 chr6 33106355 33106716 -156172838 - MLT1A1 LTR MaLR 0 365 1 1232 278 43 63 chr6 33106716 33106989 -156172565 + L1ME3 LINE L1 5028 5305 -857 2870 138 22 16 chr6 33106989 33107483 -156172071 + LOR1a LTR ERV1 1 497 0 1232 278 43 63 chr6 33107483 33108148 -156171406 + L1ME3 LINE L1 5305 5950 -212 186 43 0 0 chr6 33108212 33108235 -156171319 + (TCTCCC)n Simple_repeat Simple_repeat 4 26 0 5159 97 31 28 chr6 33108243 33109433 -156170121 + SVA Other Other 60 1369 -17 230 0 33 0 chr6 33109440 33109470 -156170084 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1013 158 64 161 chr6 33109485 33109632 -156169922 + AluJo SINE Alu 1 100 -202 2234 102 0 10 chr6 33109632 33109946 -156169608 + AluSq SINE Alu 1 311 -2 1013 158 64 161 chr6 33109946 33110127 -156169427 + AluJo SINE Alu 100 297 -5 2234 82 3 3 chr6 33110127 33110431 -156169123 + AluY SINE Alu 1 304 -7 492 210 57 150 chr6 33110646 33110769 -156168785 - L2 LINE L2 -1483 1831 1698 2012 84 12 59 chr6 33110769 33111091 -156168463 + AluSq SINE Alu 1 307 -6 492 210 57 150 chr6 33111091 33111267 -156168287 - L2 LINE L2 -1616 1698 1560 1102 216 259 5 chr6 33111312 33111682 -156167872 - LTR41 LTR ERVL -309 464 1 280 321 82 15 chr6 33111690 33111824 -156167730 + L1MC4 LINE L1 7332 7474 -568 2101 103 7 3 chr6 33111833 33112133 -156167421 + AluSx SINE Alu 1 301 -11 426 220 75 38 chr6 33112346 33112532 -156167022 + L1MC5 LINE L1 7354 7546 -415 304 285 197 18 chr6 33112532 33112872 -156166682 - LTR37B LTR ERV1 0 468 68 1975 132 10 0 chr6 33112873 33113168 -156166386 + AluJo SINE Alu 1 298 -14 239 0 32 0 chr6 33113653 33113684 -156165870 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1316 209 177 62 chr6 33113769 33114320 -156165234 - MER39 LTR ERV1 -2 705 6 487 253 109 6 chr6 33114483 33114653 -156164901 - MIR SINE MIR -41 221 30 914 44 0 11 chr6 33114959 33115139 -156164415 + L1PA4 LINE L1 5929 6152 -3 264 310 110 33 chr6 33115224 33115638 -156163916 - L2 LINE L2 -81 3232 2713 2491 46 0 0 chr6 33115719 33116021 -156163533 - AluSc SINE Alu -6 303 2 201 176 0 0 chr6 33117975 33118009 -156161545 + T-rich Low_complexity Low_complexity 1 34 0 3067 124 154 109 chr6 33118368 33118927 -156160627 - L1MC3 LINE L1 -7 7778 7083 309 264 23 11 chr6 33118927 33119014 -156160540 - MLT1F1 LTR MaLR -445 122 35 3067 124 154 109 chr6 33119014 33119229 -156160325 - L1MC3 LINE L1 -702 7083 6879 297 257 239 0 chr6 33119820 33119929 -156159625 - L2 LINE L2 -2 3270 3136 888 201 7 0 chr6 33119950 33120104 -156159450 + Tigger7 DNA MER2_type 10 164 -569 958 133 122 89 chr6 33120110 33120380 -156159174 + Tigger7 DNA MER2_type 2309 2587 0 2301 68 0 3 chr6 33120707 33121003 -156158551 - AluSc SINE Alu -14 295 1 761 185 0 0 chr6 33121048 33121210 -156158344 - FLAM_C SINE Alu 0 162 1 601 135 0 0 chr6 33121328 33121417 -156158137 - MSTD LTR MaLR 0 396 308 799 196 7 7 chr6 33121424 33121572 -156157982 - MSTD LTR MaLR -248 148 1 375 246 123 0 chr6 33121586 33121708 -156157846 - MER104 DNA Tc2 -38 142 6 441 0 0 0 chr6 33121976 33122025 -156157529 + (CA)n Simple_repeat Simple_repeat 2 50 0 389 297 34 2 chr6 33122036 33122202 -156157352 + L1ME3A LINE L1 5450 5620 -544 468 201 189 12 chr6 33122211 33122375 -156157179 + L1ME3A LINE L1 5683 5875 -295 192 77 0 0 chr6 33122398 33122424 -156157130 + (A)n Simple_repeat Simple_repeat 1 26 0 182 291 0 36 chr6 33122741 33122796 -156156758 - L2 LINE L2 -3 3269 3217 558 294 91 75 chr6 33122820 33123258 -156156296 - L2 LINE L2 -20 3252 2808 411 234 126 0 chr6 33123554 33123665 -156155889 + L2 LINE L2 3189 3313 0 276 293 160 9 chr6 33123676 33123888 -156155666 + L2 LINE L2 2726 2969 -345 256 301 28 56 chr6 33123953 33124096 -156155458 + MIR3 SINE MIR 10 148 -60 411 298 83 36 chr6 33124100 33124268 -156155286 - MER5B DNA MER1_type -1 177 2 1384 180 11 26 chr6 33125108 33125375 -156154179 - AluJb SINE Alu -49 263 1 2194 94 3 3 chr6 33125664 33125971 -156153583 - AluSp SINE Alu -6 307 1 225 218 8 129 chr6 33126023 33126147 -156153407 + MIR3 SINE MIR 83 191 -17 345 216 74 117 chr6 33126639 33126801 -156152753 + MIR3 SINE MIR 5 159 -49 243 283 0 0 chr6 33126893 33126946 -156152608 - L2 LINE L2 0 3313 3261 430 152 76 0 chr6 33127060 33127139 -156152415 + AluS SINE Alu 220 304 -8 563 214 82 125 chr6 33127139 33127213 -156152341 - L1MC4 LINE L1 -154 7888 7812 2149 84 3 3 chr6 33127213 33127528 -156152026 + AluSq SINE Alu 1 315 0 563 214 82 125 chr6 33127528 33127590 -156151964 - L1MC4 LINE L1 -230 7812 7749 1575 180 17 3 chr6 33127590 33127885 -156151669 + AluJb SINE Alu 6 304 -8 563 214 82 125 chr6 33127885 33128161 -156151393 - L1MC4 LINE L1 -293 7749 7492 688 264 96 29 chr6 33128211 33128601 -156150953 - L1MC5 LINE L1 -544 7498 7127 189 321 38 0 chr6 33129003 33129056 -156150498 + MIR3 SINE MIR 114 168 -40 2131 105 0 16 chr6 33129059 33129364 -156150190 - AluSc SINE Alu -9 300 1 425 300 50 6 chr6 33130061 33130221 -156149333 - MIR SINE MIR -29 233 67 1393 189 3 48 chr6 33130613 33130926 -156148628 - AluJb SINE Alu -1 311 13 2457 69 0 0 chr6 33130992 33131298 -156148256 + AluY SINE Alu 1 306 -5 301 328 8 42 chr6 33131319 33131438 -156148116 + MER91B DNA MER1_type 1 115 -75 212 272 235 0 chr6 33131465 33131546 -156148008 + MER91B DNA MER1_type 91 190 0 395 198 58 12 chr6 33131566 33131652 -156147902 + MIR3 SINE MIR 108 197 -11 209 285 236 8 chr6 33132618 33132741 -156146813 + MIR3 SINE MIR 29 179 -29 1801 161 56 15 chr6 33133022 33133346 -156146208 - MER2 DNA MER2_type -8 337 1 186 194 0 0 chr6 33133797 33133828 -156145726 - L2 LINE L2 -217 3055 3025 284 219 179 3 chr6 33134426 33134536 -156145018 + MIR SINE MIR 30 153 -62 413 294 119 17 chr6 33135367 33135544 -156144010 - MIR3 SINE MIR -13 195 1 201 191 95 0 chr6 33135749 33135791 -156143763 + MER91A DNA MER1_type 124 169 -27 816 103 0 0 chr6 33136011 33136128 -156143426 - AluSg/x SINE Alu -11 299 183 1631 103 5 0 chr6 33136128 33136352 -156143202 - AluSx SINE Alu -87 225 1 1733 149 10 5 chr6 33136353 33136929 -156142625 - L1MA5 LINE L1 -47 6253 5553 * 3098 149 12 62 chr6 33136924 33137446 -156142108 + L1 LINE L1 4224 4619 -1527 2269 94 7 0 chr6 33137446 33137745 -156141809 + AluSg SINE Alu 1 301 -9 3098 149 12 62 chr6 33137745 33138062 -156141492 + L1 LINE L1 4619 4950 -1196 811 170 0 0 chr6 33138240 33138375 -156141179 + FLAM_C SINE Alu 6 140 -3 538 258 102 67 chr6 33139298 33139581 -156139973 + L2 LINE L2 3020 3312 -1 467 311 37 21 chr6 33139760 33139950 -156139604 + L2 LINE L2 2502 2694 -620 1207 282 49 27 chr6 33139981 33140432 -156139122 - MLT1J LTR MaLR -50 461 1 307 333 64 13 chr6 33140448 33140604 -156138950 + L2 LINE L2 2718 2881 -433 347 252 25 76 chr6 33140698 33140817 -156138737 + L2 LINE L2 3163 3275 -38 358 148 102 45 chr6 33142147 33142235 -156137319 + MER91C DNA MER1_type 14 106 -34 2563 29 7 3 chr6 33142671 33142980 -156136574 - AluY SINE Alu -1 310 1 2316 83 3 0 chr6 33142980 33143280 -156136274 - AluY SINE Alu -10 301 1 315 164 0 0 chr6 33144562 33144623 -156134931 + GA-rich Low_complexity Low_complexity 2 62 0 204 125 0 0 chr6 33144685 33144717 -156134837 + (GGA)n Simple_repeat Simple_repeat 2 33 0 464 234 39 23 chr6 33146335 33146463 -156133091 + L2 LINE L2 3179 3308 -5 2484 55 0 3 chr6 33146902 33147212 -156132342 - AluY SINE Alu -1 310 2 239 171 0 0 chr6 33147512 33147547 -156132007 - Alu SINE Alu -265 36 2 778 209 19 6 chr6 33147551 33147709 -156131845 - FRAM SINE Alu -6 160 1 383 348 185 6 chr6 33147795 33148114 -156131440 - L2 LINE L2 -19 3294 2919 1864 137 0 10 chr6 33148176 33148468 -156131086 - AluSx SINE Alu -9 303 15 188 268 0 0 chr6 33148490 33148531 -156131023 + L2 LINE L2 3237 3277 -36 192 77 0 0 chr6 33148561 33148587 -156130967 + (CTG)n Simple_repeat Simple_repeat 3 28 0 230 362 26 9 chr6 33148650 33148766 -156130788 + L1M2 LINE L1 667 784 -6065 11249 195 48 31 chr6 33148874 33150043 -156129511 + L1M2 LINE L1 624 1771 -5077 2506 64 0 0 chr6 33150043 33150354 -156129200 + AluY SINE Alu 1 311 0 11249 195 48 31 chr6 33150354 33152205 -156127349 + L1M2 LINE L1 1771 3588 -3260 2147 111 0 7 chr6 33152205 33152512 -156127042 + AluSq SINE Alu 1 305 -8 11249 195 48 31 chr6 33152512 33154237 -156125317 + L1M2 LINE L1 3588 5409 -1439 5444 101 2 23 chr6 33154316 33155110 -156124444 + L1PA11 LINE L1 5397 6174 0 307 284 53 64 chr6 33156129 33156323 -156123231 + MIR SINE MIR 32 221 -41 267 31 0 0 chr6 33156603 33156635 -156122919 + (CTA)n Simple_repeat Simple_repeat 1 32 0 1617 126 119 0 chr6 33156900 33157177 -156122377 - AluSx SINE Alu -2 310 1 2000 138 0 0 chr6 33157179 33157477 -156122077 - AluSx SINE Alu -9 303 6 579 205 180 31 chr6 33159237 33159398 -156120156 + MER5A DNA MER1_type 4 188 -1 944 236 41 24 chr6 33159590 33159836 -156119718 - MIR SINE MIR -11 251 2 329 202 186 47 chr6 33160831 33160960 -156118594 + MIR3 SINE MIR 48 194 -14 569 304 149 5 chr6 33161992 33162193 -156117361 - MIR SINE MIR -1 261 32 327 285 133 53 chr6 33163281 33163432 -156116122 + MIR3 SINE MIR 3 165 -43 251 310 107 83 chr6 33163767 33164057 -156115497 - L2 LINE L2 -8 3264 2968 7264 56 5 0 chr6 33164077 33165793 -156113761 + L1PA7 LINE L1 4435 6154 0 460 323 103 36 chr6 33165850 33166345 -156113209 - L2 LINE L2 -337 2977 2450 225 65 0 0 chr6 33167327 33167358 -156112196 + (GA)n Simple_repeat Simple_repeat 1 31 0 351 0 0 0 chr6 33167921 33167960 -156111594 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 357 288 76 33 chr6 33168070 33168254 -156111300 - MIR SINE MIR -51 211 20 1315 161 17 116 chr6 33168464 33168589 -156110965 + MER33 DNA MER1_type 7 143 -2442 2408 62 0 3 chr6 33168589 33168898 -156110656 - AluY SINE Alu -3 308 1 1315 161 17 116 chr6 33168898 33169125 -156110429 + MER33 DNA MER1_type 143 324 0 399 300 64 0 chr6 33169171 33169311 -156110243 + MIR SINE MIR 73 221 -41 221 280 0 0 chr6 33170655 33170705 -156108849 + L2 LINE L2 3264 3313 0 202 323 11 0 chr6 33170785 33170878 -156108676 + (TG)n Simple_repeat Simple_repeat 2 95 0 538 299 117 5 chr6 33171823 33172020 -156107534 + MIR SINE MIR 28 246 -16 193 282 26 64 chr6 33172683 33172761 -156106793 + MIR SINE MIR 110 184 -78 266 299 197 7 chr6 33172959 33173106 -156106448 + MIR3 SINE MIR 30 204 -4 1182 156 0 50 chr6 33173178 33173416 -156106138 + AluJo SINE Alu 87 312 0 288 292 83 47 chr6 33173974 33174149 -156105405 + MIR SINE MIR 23 206 -56 317 304 134 0 chr6 33174746 33174858 -156104696 - L2 LINE L2 -1 3271 3145 * 591 161 201 20 chr6 33174851 33175000 -156104554 + MER5A DNA MER1_type 14 189 0 228 186 29 14 chr6 33175284 33175354 -156104200 + (TA)n Simple_repeat Simple_repeat 1 71 0 194 233 83 50 chr6 33176171 33176231 -156103323 - MER5A DNA MER1_type -6 183 122 207 214 24 0 chr6 33176234 33176276 -156103278 - MER5A DNA MER1_type -121 68 26 501 269 31 31 chr6 33177180 33177310 -156102244 + MIR3 SINE MIR 2 131 -77 247 313 84 99 chr6 33177336 33177668 -156101886 - L2 LINE L2 -3 3269 2943 22 80 0 0 chr6 33178829 33178879 -156100675 + AT_rich Low_complexity Low_complexity 1 50 0 866 284 72 0 chr6 33179450 33179686 -156099868 - MIR SINE MIR -1 261 9 236 322 154 28 chr6 33180477 33180691 -156098863 + L2 LINE L2 2851 3091 -181 22 0 0 0 chr6 33180807 33180829 -156098725 + AT_rich Low_complexity Low_complexity 1 22 0 2786 44 0 6 chr6 33180881 33181221 -156098333 + L1PA5 LINE L1 5812 6149 -5 646 315 81 8 chr6 33181259 33181494 -156098060 - MIR SINE MIR -1 261 10 292 247 155 10 chr6 33181660 33181757 -156097797 - L2 LINE L2 0 3272 3162 1517 214 75 38 chr6 33181792 33181854 -156097700 - MLT1E LTR MaLR 0 593 535 2120 113 0 7 chr6 33181854 33182164 -156097390 + AluSx SINE Alu 1 308 -4 1517 214 75 38 chr6 33182164 33182622 -156096932 - MLT1E LTR MaLR -58 535 1 2189 60 3 3 chr6 33184179 33184485 -156095069 + AluY SINE Alu 1 306 0 185 287 143 43 chr6 33186654 33186884 -156092670 + L2 LINE L2 2719 2971 -343 186 43 0 0 chr6 33187442 33187465 -156092089 + (A)n Simple_repeat Simple_repeat 1 23 0 503 303 116 45 chr6 33187808 33188230 -156091324 + L1 LINE L1 4569 5020 -1126 527 314 171 14 chr6 33188837 33189276 -156090278 + L2 LINE L2 1031 1538 -1776 448 286 66 121 chr6 33189285 33189544 -156090010 + L2 LINE L2 1934 2206 -1108 982 177 0 0 chr6 33189544 33189708 -156089846 - AluJo SINE Alu -2 300 137 448 286 66 121 chr6 33189708 33189764 -156089790 + L2 LINE L2 2206 2263 -1051 858 145 0 0 chr6 33189764 33189888 -156089666 - AluJo SINE Alu -175 127 4 448 286 66 121 chr6 33189888 33190159 -156089395 + L2 LINE L2 2263 2489 -825 6861 57 7 0 chr6 33190174 33191020 -156088534 - L1PA7 LINE L1 -15 6139 5288 432 326 96 14 chr6 33191149 33191287 -156088267 + L2 LINE L2 2999 3124 -189 1981 107 0 0 chr6 33191287 33191558 -156087996 + AluSg1 SINE Alu 38 308 -1 432 326 96 14 chr6 33191558 33191710 -156087844 + L2 LINE L2 3124 3313 0 567 295 82 62 chr6 33192183 33192539 -156087015 + L1MC4a LINE L1 4623 4985 -1161 296 313 101 46 chr6 33192567 33192784 -156086770 + L1MC4a LINE L1 5679 5907 -1901 252 0 0 0 chr6 33192798 33192826 -156086728 + (TG)n Simple_repeat Simple_repeat 2 29 0 231 283 0 0 chr6 33193033 33193093 -156086461 + A-rich Low_complexity Low_complexity 5 64 0 237 329 38 0 chr6 33193198 33193277 -156086277 - MIR3 SINE MIR -11 197 116 285 269 21 21 chr6 33194680 33194773 -156084781 - L3b LINE CR1 -201 1382 1290 290 150 167 0 chr6 33195278 33195338 -156084216 + MER21B LTR ERV1 1 70 -793 445 211 67 19 chr6 33195338 33195442 -156084112 - Tigger5 DNA MER2_type 0 2323 2215 920 244 96 84 chr6 33195565 33195649 -156083905 + MER21B LTR ERV1 98 180 -683 2327 90 0 3 chr6 33195649 33195961 -156083593 - AluSq SINE Alu -2 311 1 920 244 96 84 chr6 33195961 33196221 -156083333 + MER21B LTR ERV1 180 446 -417 344 323 105 27 chr6 33196234 33196491 -156083063 + L2 LINE L2 677 953 -2361 314 362 26 0 chr6 33196514 33196630 -156082924 - MIR SINE MIR -133 129 11 207 239 0 0 chr6 33196690 33196757 -156082797 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 1587 240 49 48 chr6 33197122 33197689 -156081865 + L1MC4a LINE L1 5315 5882 -1926 2138 75 60 0 chr6 33197699 33197980 -156081574 + AluY SINE Alu 1 298 -13 29 0 0 0 chr6 33198094 33198123 -156081431 + AT_rich Low_complexity Low_complexity 1 29 0 356 264 192 10 chr6 33198123 33198316 -156081238 + L1MC4a LINE L1 5879 6106 -1702 201 255 39 0 chr6 33198605 33198656 -156080898 + L2 LINE L2 3218 3270 -2 365 351 0 15 chr6 33198887 33199018 -156080536 + MER91A DNA MER1_type 60 188 -8 194 292 42 14 chr6 33199105 33199177 -156080377 + L2 LINE L2 3201 3274 -39 1120 162 43 32 chr6 33200388 33200641 -156078913 + L1MA8 LINE L1 5903 6158 -133 2199 219 151 11 chr6 33201118 33201681 -156077873 + MER69 DNA AcHobo 50 691 -1835 2571 191 96 36 chr6 33201711 33202457 -156077097 + MER69 DNA AcHobo 1650 2459 -67 2045 100 0 37 chr6 33202457 33202778 -156076776 - AluSc SINE Alu 0 309 1 2571 191 96 36 chr6 33202778 33202848 -156076706 + MER69 DNA AcHobo 2459 2523 -3 180 222 0 0 chr6 33203709 33203745 -156075809 - MIR SINE MIR -116 146 111 1714 196 0 0 chr6 33204941 33205253 -156074301 + AluJb SINE Alu 1 312 0 266 259 88 54 chr6 33205725 33205930 -156073624 - L1MC4a LINE L1 -1744 6064 5853 205 314 0 0 chr6 33205995 33206046 -156073508 - L2 LINE L2 -32 3240 3190 23 54 0 0 chr6 33206073 33206110 -156073444 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr6 33206617 33206648 -156072906 + AT_rich Low_complexity Low_complexity 1 31 0 2206 95 10 3 chr6 33206945 33207251 -156072303 - AluSx SINE Alu -4 308 1 755 140 185 0 chr6 33207412 33207569 -156071985 - MER53 DNA DNA -3 186 1 390 234 81 8 chr6 33207748 33207872 -156071682 - L1ME4a LINE L1 -3 6118 5986 325 285 95 88 chr6 33207899 33208183 -156071371 + L2 LINE L2 3028 3313 0 296 271 8 81 chr6 33208222 33208239 -156071315 - L1MC4a LINE L1 -453 5668 5651 2478 172 82 64 chr6 33208239 33208850 -156070704 - LTR26E LTR ERV1 0 622 1 296 271 8 81 chr6 33208850 33208992 -156070562 - L1MC4a LINE L1 -470 5651 5517 1794 158 32 84 chr6 33209147 33209435 -156070119 - MLT1B LTR MaLR 0 390 127 4555 107 35 51 chr6 33209435 33209846 -156069708 + MER4E LTR ERV1 1 394 -372 2140 103 3 3 chr6 33209846 33210147 -156069407 + AluSx SINE Alu 2 302 -10 4555 107 35 51 chr6 33210147 33210514 -156069040 + MER4E LTR ERV1 394 766 0 1794 158 32 84 chr6 33210514 33210630 -156068924 - MLT1B LTR MaLR -263 127 7 253 320 112 11 chr6 33210675 33210853 -156068701 - L3 LINE CR1 -298 1279 1084 371 127 0 0 chr6 33211045 33211100 -156068454 - MLT2D LTR ERVL -359 55 1 2134 121 3 3 chr6 33211609 33212041 -156067513 + AluSq SINE Alu 1 432 0 299 249 62 84 chr6 33212285 33212548 -156067006 - L1ME LINE L1 -548 5576 5319 385 256 73 46 chr6 33212553 33212772 -156066782 - L1ME4a LINE L1 -3 6118 5894 1252 156 33 0 chr6 33212989 33213201 -156066353 + MER20 DNA MER1_type 1 219 0 2192 64 0 0 chr6 33213208 33213517 -156066037 - AluY SINE Alu 0 309 1 861 240 133 13 chr6 33213577 33213810 -156065744 + MIR SINE MIR 2 262 0 317 241 141 31 chr6 33213876 33214035 -156065519 - L1ME4a LINE L1 -569 5552 5410 1755 145 0 60 chr6 33214052 33214370 -156065184 - AluJb SINE Alu -1 311 13 953 259 63 32 chr6 33214707 33215085 -156064469 - L1MC4a LINE L1 -1875 5933 5544 2275 108 0 3 chr6 33215507 33215821 -156063733 + AluSq SINE Alu 1 313 0 210 320 19 0 chr6 33216156 33216233 -156063321 + MIR SINE MIR 36 114 -109 587 291 23 17 chr6 33216237 33216409 -156063145 + MER5A DNA MER1_type 1 173 -16 650 209 23 0 chr6 33216788 33216917 -156062637 + MER94 DNA DNA 2 133 -1 375 270 74 20 chr6 33218731 33218879 -156060675 + MIR SINE MIR 36 191 -71 1755 121 29 35 chr6 33219561 33219875 -156059679 + AluJb SINE Alu 1 312 0 922 133 50 115 chr6 33220672 33220950 -156058604 - Charlie5 DNA MER1_type -1 2611 2352 * 1025 137 35 25 chr6 33220948 33221018 -156058536 - Charlie5 DNA MER1_type -2424 200 132 1859 131 65 0 chr6 33221018 33221309 -156058245 - AluSx SINE Alu -2 310 1 1025 137 35 25 chr6 33221309 33221435 -156058119 - Charlie5 DNA MER1_type -2492 132 2 211 267 26 35 chr6 33222163 33222279 -156057275 + CT-rich Low_complexity Low_complexity 6 120 0 2249 101 0 0 chr6 33222321 33222619 -156056935 - AluSq SINE Alu -7 306 9 258 32 0 0 chr6 33223773 33223804 -156055750 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1980 100 11 4 chr6 33223806 33224085 -156055469 - AluSq SINE Alu -32 281 1 205 200 0 0 chr6 33224289 33224329 -156055225 + T-rich Low_complexity Low_complexity 1 40 0 1230 178 58 3 chr6 33225114 33225421 -156054133 + MER33 DNA MER1_type 1 302 -22 342 315 55 7 chr6 33226214 33226360 -156053194 - MIR SINE MIR -60 202 50 381 202 102 3 chr6 33229243 33229357 -156050197 + L1MC/D LINE L1 5652 5775 -412 186 333 0 16 chr6 33230378 33230441 -156049113 + L2 LINE L2 3247 3308 -5 240 261 120 22 chr6 33230482 33230574 -156048980 + L2 LINE L2 2985 3085 -187 231 170 0 0 chr6 33231265 33231312 -156048242 + (CA)n Simple_repeat Simple_repeat 2 48 0 1434 201 120 11 chr6 33231322 33231671 -156047883 - MLT1C LTR MaLR 0 467 81 1654 158 0 69 chr6 33231673 33232149 -156047405 - AluJb SINE Alu 0 453 1 394 207 46 0 chr6 33232151 33232238 -156047316 - MLT1C LTR MaLR -375 92 2 350 234 64 117 chr6 33232998 33233186 -156046368 - L1MC4 LINE L1 -1 8041 7864 437 297 47 20 chr6 33233578 33233726 -156045828 + L2 LINE L2 3162 3313 0 2262 236 29 11 chr6 33233854 33234413 -156045141 - MER90 LTR ERV1 -5 570 2 2153 81 16 10 chr6 33234513 33234822 -156044732 - AluY SINE Alu 0 311 1 1865 139 3 23 chr6 33235650 33235960 -156043594 - AluSx SINE Alu -2 310 7 423 0 0 0 chr6 33236067 33236114 -156043440 + (TG)n Simple_repeat Simple_repeat 2 48 0 527 235 181 47 chr6 33236142 33236419 -156043135 + HAL1 LINE L1 2190 2503 -4 360 277 54 34 chr6 33236858 33237006 -156042548 - L1MC4a LINE L1 -1878 5930 5780 745 143 16 16 chr6 33237190 33237316 -156042238 - FLAM_C SINE Alu -7 126 1 344 304 170 0 chr6 33237630 33237742 -156041812 + L2 LINE L2 3183 3313 0 499 163 0 0 chr6 33237831 33237911 -156041643 + MIR SINE MIR 73 152 -110 2318 78 13 3 chr6 33238111 33238420 -156041134 - AluSp SINE Alu 0 313 2 26 0 0 0 chr6 33239395 33239421 -156040133 + AT_rich Low_complexity Low_complexity 1 26 0 534 281 182 6 chr6 33239450 33239785 -156039769 + L2 LINE L2 2239 2632 -682 496 302 81 9 chr6 33239789 33240079 -156039475 + L2 LINE L2 2797 3104 -209 407 341 7 0 chr6 33240079 33240214 -156039340 - L2 LINE L2 -240 3032 2897 590 266 74 10 chr6 33240420 33240623 -156038931 + L2 LINE L2 3098 3313 0 220 195 0 0 chr6 33240795 33240836 -156038718 + MIR3 SINE MIR 117 157 -51 211 319 0 14 chr6 33241097 33241166 -156038388 + GA-rich Low_complexity Low_complexity 4 71 0 323 337 67 36 chr6 33241354 33241547 -156038007 + L2 LINE L2 2431 2629 -685 481 339 15 20 chr6 33241732 33241927 -156037627 + L2 LINE L2 2897 3090 -182 949 149 29 6 chr6 33241956 33242130 -156037424 - MER53 DNA DNA -3 186 9 2307 85 7 0 chr6 33242457 33242764 -156036790 - AluSc SINE Alu 0 309 1 357 290 30 0 chr6 33242875 33242975 -156036579 + MIR3 SINE MIR 106 208 0 656 197 0 41 chr6 33243221 33243343 -156036211 + FLAM_C SINE Alu 2 118 -25 225 0 0 0 chr6 33243343 33243368 -156036186 + (CAAT)n Simple_repeat Simple_repeat 1 25 0 927 270 159 31 chr6 33243370 33243885 -156035669 + L2 LINE L2 2712 3300 -13 195 100 0 0 chr6 33243885 33243915 -156035639 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1946 129 4 0 chr6 33243939 33244218 -156035336 + AluSx SINE Alu 1 280 -32 192 40 0 0 chr6 33244218 33244243 -156035311 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 43891 32 22 1 chr6 33244301 33250338 -156029216 + L1PA3 LINE L1 1 6166 0 394 317 81 6 chr6 33250595 33250756 -156028798 + MIR SINE MIR 20 192 -70 998 276 75 41 chr6 33252307 33252745 -156026809 - L2 LINE L2 -8 3305 2853 806 221 23 6 chr6 33252781 33252953 -156026601 - MER5B DNA MER1_type -3 175 1 1459 191 9 8 chr6 33253242 33253532 -156026022 - MLT1D LTR MaLR 0 505 231 291 290 10 30 chr6 33254134 33254249 -156025305 + GA-rich Low_complexity Low_complexity 1 196 0 334 270 197 26 chr6 33254304 33254456 -156025098 + MIR3 SINE MIR 3 180 -28 200 339 0 35 chr6 33257179 33257294 -156022260 + G-rich Low_complexity Low_complexity 3 113 0 1688 181 138 42 chr6 33257868 33258294 -156021260 - MLT1C LTR MaLR 0 467 1 225 282 153 0 chr6 33264264 33264349 -156015205 - L2 LINE L2 -43 3229 3132 2275 123 113 49 chr6 33265256 33265664 -156013890 - Tigger2a DNA MER2_type 0 434 1 450 222 69 21 chr6 33266458 33266602 -156012952 + L1M4 LINE L1 5079 5229 -917 30 0 0 0 chr6 33266604 33266634 -156012920 + AT_rich Low_complexity Low_complexity 1 30 0 1982 259 65 44 chr6 33266899 33267900 -156011654 + L1MEd LINE L1 318 1384 -4862 1837 139 6 59 chr6 33268055 33268378 -156011176 + AluJb SINE Alu 1 306 -6 512 266 91 35 chr6 33271818 33272017 -156007537 - MIR SINE MIR -48 214 5 256 161 18 18 chr6 33274124 33274180 -156005374 + MIR SINE MIR 96 151 -111 323 378 67 31 chr6 33274478 33274671 -156004883 - L2 LINE L2 -25 3247 3048 801 199 64 6 chr6 33275098 33275269 -156004285 + MER3 DNA MER1_type 29 209 0 763 199 151 102 chr6 33276037 33276460 -156003094 - L1ME3A LINE L1 0 6170 5727 230 196 0 0 chr6 33276647 33276693 -156002861 + L2 LINE L2 3263 3308 -5 2117 181 15 2 chr6 33277253 33277657 -156001897 - L1 LINE L1 -2299 3847 3439 1231 145 26 5 chr6 33277658 33277851 -156001703 + AluJb SINE Alu 100 296 -16 5921 135 53 26 chr6 33277913 33279124 -156000430 + L1MA4A LINE L1 4750 6024 -279 303 49 0 0 chr6 33279124 33279165 -156000389 + (TG)n Simple_repeat Simple_repeat 1 41 0 5921 135 53 26 chr6 33279165 33279447 -156000107 + L1MA4A LINE L1 6024 6297 -6 6117 199 47 62 chr6 33279510 33280175 -155999379 - L1MB7 LINE L1 -61 6123 5450 291 114 0 0 chr6 33280175 33280219 -155999335 + (TG)n Simple_repeat Simple_repeat 2 45 0 2177 100 0 4 chr6 33280222 33280502 -155999052 - AluSg SINE Alu -31 279 1 6117 199 47 62 chr6 33280502 33280620 -155998934 - L1MB7 LINE L1 -736 5448 5330 2153 134 0 0 chr6 33280620 33280918 -155998636 - AluSx SINE Alu -12 300 3 6117 199 47 62 chr6 33280918 33281108 -155998446 - L1MB7 LINE L1 -854 5330 5139 374 125 111 0 chr6 33281108 33281180 -155998374 - L1MA7 LINE L1 -1 6290 6211 6117 199 47 62 chr6 33281180 33281314 -155998240 - L1MB7 LINE L1 -1045 5139 5005 291 28 0 0 chr6 33281314 33281350 -155998204 + (TA)n Simple_repeat Simple_repeat 2 37 0 2332 85 0 0 chr6 33281350 33281632 -155997922 - AluSg SINE Alu -28 282 1 6117 199 47 62 chr6 33281632 33281749 -155997805 - L1MB7 LINE L1 -1178 5006 4889 1829 218 21 46 chr6 33281749 33282226 -155997328 - MLT1C LTR MaLR 0 467 3 6117 199 47 62 chr6 33282226 33282472 -155997082 - L1MB7 LINE L1 -1295 4889 4641 1888 160 6 13 chr6 33282472 33282784 -155996770 - AluJo SINE Alu -2 310 1 6117 199 47 62 chr6 33282784 33283411 -155996143 - L1MB7 LINE L1 -1543 4641 4007 2122 138 126 31 chr6 33283411 33283801 -155995753 + MSTA LTR MaLR 1 427 -1 6117 199 47 62 chr6 33283801 33283884 -155995670 - L1MB7 LINE L1 -2177 4007 3924 613 238 0 24 chr6 33283884 33284010 -155995544 - FLAM_A SINE Alu -7 126 4 6117 199 47 62 chr6 33284010 33284382 -155995172 - L1MB7 LINE L1 -2260 3924 3576 2092 179 3 29 chr6 33284459 33284834 -155994720 + MLT1A1 LTR MaLR 1 365 0 1281 135 90 12 chr6 33284843 33285088 -155994466 + MER21A LTR ERV1 1 264 -667 2894 144 124 10 chr6 33285093 33285592 -155993962 + MER21A LTR ERV1 376 931 0 501 326 47 63 chr6 33286114 33286476 -155993078 + LTR67 LTR ERVL 104 459 -98 209 33 33 0 chr6 33286498 33286528 -155993026 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 318 299 132 7 chr6 33286615 33286759 -155992795 + MER5B DNA MER1_type 1 162 -16 289 278 308 0 chr6 33286788 33286921 -155992633 + MER5A DNA MER1_type 9 182 -7 2317 277 111 29 chr6 33286994 33288127 -155991427 + L2 LINE L2 2108 3311 -2 274 233 181 35 chr6 33288094 33288210 -155991344 - L3 LINE CR1 -489 1088 956 * 4099 219 100 41 chr6 33288981 33289404 -155990150 - Charlie1a DNA MER1_type -1306 1455 1058 1383 197 48 7 chr6 33289404 33289699 -155989855 - AluJo SINE Alu -5 307 1 4099 219 100 41 chr6 33289699 33290291 -155989263 - Charlie1a DNA MER1_type -1703 1058 336 2013 141 3 13 chr6 33290291 33290596 -155988958 - AluSx SINE Alu -10 302 1 4099 219 100 41 chr6 33290596 33290947 -155988607 - Charlie1a DNA MER1_type -2425 336 7 1446 181 0 106 chr6 33291269 33291600 -155987954 - AluJo SINE Alu -16 296 1 1746 197 57 17 chr6 33291663 33292014 -155987540 - MLT1A1 LTR MaLR 0 365 1 1134 168 35 15 chr6 33292016 33292218 -155987336 + MER3 DNA MER1_type 2 207 -2 1756 171 24 0 chr6 33292653 33292940 -155986614 - AluSx SINE Alu -18 294 1 2100 261 83 4 chr6 33293269 33293832 -155985722 - MER90 LTR ERV1 -2 612 5 2013 64 4 16 chr6 33294083 33294363 -155985191 + AluY SINE Alu 36 312 0 287 343 24 14 chr6 33294371 33294584 -155984970 + L1ME LINE L1 5553 5767 -354 230 326 35 28 chr6 33294598 33294739 -155984815 - MIR SINE MIR -20 242 101 226 356 46 26 chr6 33294963 33295157 -155984397 - L2 LINE L2 0 3313 3116 1959 270 143 56 chr6 33295218 33296095 -155983459 + HAL1 LINE L1 972 2018 -489 1120 208 124 69 chr6 33296095 33296441 -155983113 - MLT1A1 LTR MaLR 0 365 1 1959 270 143 56 chr6 33296441 33296968 -155982586 + HAL1 LINE L1 2018 2498 -9 309 259 54 45 chr6 33296969 33297081 -155982473 - L2 LINE L2 -1502 1812 1700 21 36 0 0 chr6 33297631 33297659 -155981895 + AT_rich Low_complexity Low_complexity 1 28 0 2292 71 3 14 chr6 33298509 33298805 -155980749 - AluY SINE Alu -18 293 1 2558 180 87 74 chr6 33299242 33299528 -155980026 + MER65-int LTR ERV1 817 1098 -1287 2423 77 0 0 chr6 33299528 33299825 -155979729 - AluY SINE Alu -14 297 1 2558 180 87 74 chr6 33299825 33300259 -155979295 + MER65-int LTR ERV1 1098 1531 -854 2969 6 0 0 chr6 33300259 33300577 -155978977 - AluYb8 SINE Alu 0 318 1 2558 180 87 74 chr6 33300577 33300677 -155978877 + MER65-int LTR ERV1 1531 1628 -757 7913 165 19 110 chr6 33300678 33302319 -155977235 + L1MB3 LINE L1 3405 4812 -1334 2259 82 41 0 chr6 33302319 33302612 -155976942 - AluSg SINE Alu -5 305 1 7913 165 19 110 chr6 33302612 33303088 -155976466 + L1MB3 LINE L1 4812 5330 -816 3618 96 54 15 chr6 33303089 33303622 -155975932 - L1PB1 LINE L1 -84 6067 5514 1379 50 0 2 chr6 33303623 33303881 -155975673 + AluY SINE Alu 2 309 -2 7674 186 4 6 chr6 33303881 33305656 -155973898 - L1PB1 LINE L1 -621 5530 3760 895 109 32 19 chr6 33305646 33305802 -155973752 + L1MA5 LINE L1 6143 6300 0 * 258 303 109 40 chr6 33305864 33306039 -155973515 + MLT1K LTR MaLR 152 338 -250 181 297 116 58 chr6 33306284 33306439 -155973115 + MIR SINE MIR 74 237 -25 2762 170 42 5 chr6 33307547 33308124 -155971430 + L1MB3 LINE L1 5586 6183 0 1509 155 97 7 chr6 33308195 33308473 -155971081 - AluJo SINE Alu -9 303 1 393 225 92 25 chr6 33308484 33308604 -155970950 - L1MC5 LINE L1 -44 7917 7790 1989 194 16 32 chr6 33308669 33309224 -155970330 - L1MC3 LINE L1 -93 7692 7000 673 252 69 69 chr6 33309226 33309556 -155969998 - L1MC5 LINE L1 -178 7783 7451 2951 179 16 11 chr6 33309556 33310108 -155969446 - MER41D LTR ERV1 0 557 3 673 252 69 69 chr6 33310108 33310209 -155969345 - L1MC5 LINE L1 -509 7452 7352 1825 185 61 26 chr6 33311453 33311881 -155967673 - LTR47B LTR ERVL 0 443 1 304 229 14 0 chr6 33311887 33311957 -155967597 - MER4B-int LTR ERV1 -688 6070 6000 520 344 37 37 chr6 33312717 33313261 -155966293 - LTR57-int LTR ERVL -1181 4162 3619 539 350 60 45 chr6 33313428 33314111 -155965443 - LTR57-int LTR ERVL -1925 3418 2726 404 236 40 0 chr6 33314209 33314357 -155965197 - L1MC5 LINE L1 -509 7452 7299 636 105 0 21 chr6 33314376 33314471 -155965083 + MER4A LTR ERV1 1 93 -571 1132 169 4 24 chr6 33314475 33314712 -155964842 + MER4A LTR ERV1 261 551 -113 3468 164 44 9 chr6 33314856 33315521 -155964033 - L1MB4 LINE L1 0 6249 5562 2128 114 0 7 chr6 33315565 33315864 -155963690 - AluSc SINE Alu -12 297 1 1544 226 46 27 chr6 33315875 33316352 -155963202 - L1MB4 LINE L1 -757 5458 4973 21 0 0 0 chr6 33316526 33316547 -155963007 + AT_rich Low_complexity Low_complexity 1 21 0 304 285 169 15 chr6 33317869 33317999 -155961555 + MIR SINE MIR 22 171 -91 558 176 170 42 chr6 33318000 33318165 -155961389 - MER20 DNA MER1_type -2 217 32 812 203 38 0 chr6 33318674 33318832 -155960722 + FRAM SINE Alu 1 162 -14 440 242 45 50 chr6 33318915 33319197 -155960357 - L1MB4 LINE L1 -3829 2400 2145 1109 298 97 25 chr6 33319480 33320260 -155959294 + L2 LINE L2 2352 3203 -110 925 170 55 77 chr6 33320260 33320495 -155959059 + MER30 DNA MER1_type 1 230 0 1109 298 97 25 chr6 33320495 33320613 -155958941 + L2 LINE L2 3203 3311 -2 180 152 0 0 chr6 33325270 33325303 -155954251 + T-rich Low_complexity Low_complexity 1 33 0 283 268 56 0 chr6 33326104 33326175 -155953379 + L2 LINE L2 2686 2760 -554 218 204 0 0 chr6 33326224 33326273 -155953281 + L2 LINE L2 3265 3313 0 289 191 29 0 chr6 33326408 33326476 -155953078 - MLT1E3 LTR MaLR 0 624 555 1200 224 10 20 chr6 33326510 33326809 -155952745 - AluJo SINE Alu -16 296 1 1891 241 90 21 chr6 33326809 33327332 -155952222 - MLT1E3 LTR MaLR -52 572 14 1535 170 7 10 chr6 33327505 33327793 -155951761 + AluJb SINE Alu 1 287 -25 941 208 15 15 chr6 33327866 33328063 -155951491 - MLT1F1 LTR MaLR 0 567 371 501 323 18 0 chr6 33328073 33328237 -155951317 - LTR16B LTR ERVL -236 228 62 939 359 46 30 chr6 33328257 33329343 -155950211 - HERV16 LTR ERVL -516 5248 4145 3021 315 48 35 chr6 33329535 33330331 -155949223 - HERV16 LTR ERVL -1900 3096 2312 258 32 0 0 chr6 33330331 33330362 -155949192 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 1895 129 7 0 chr6 33330366 33330645 -155948909 - AluSq SINE Alu -32 281 1 3021 315 48 35 chr6 33330645 33332231 -155947323 - HERV16 LTR ERVL -2686 2310 858 807 306 72 27 chr6 33332921 33333365 -155946189 - LTR16B LTR ERVL 0 464 1 2744 232 71 103 chr6 33333365 33334403 -155945151 - L2 LINE L2 -1658 1656 673 1887 218 101 27 chr6 33334403 33334986 -155944568 - MLT1E2 LTR MaLR 0 626 1 2744 232 71 103 chr6 33334986 33335354 -155944200 - L2 LINE L2 -2641 673 295 607 163 98 0 chr6 33335354 33335477 -155944077 - Tigger1 DNA MER2_type -242 2176 2042 181 367 0 51 chr6 33335507 33335586 -155943968 + MIR SINE MIR 23 97 -165 180 195 98 0 chr6 33335654 33335695 -155943859 + MIR SINE MIR 120 164 -98 237 328 0 0 chr6 33338103 33338170 -155941384 - MER82 DNA MER2_type -91 562 496 275 305 49 44 chr6 33338233 33338413 -155941141 + MIR SINE MIR 21 199 -63 1002 161 33 0 chr6 33338834 33339014 -155940540 - MLT1B LTR MaLR 0 390 205 302 73 0 109 chr6 33339011 33339066 -155940488 - MLT1B LTR MaLR -341 49 1 * 5701 150 25 27 chr6 33339491 33340936 -155938618 - L1MA4A LINE L1 -5 6298 4861 1012 207 18 0 chr6 33340948 33341165 -155938389 - L1MA4A LINE L1 -2184 3962 3742 1960 252 99 17 chr6 33341211 33341929 -155937625 - L1ME2 LINE L1 -2 6162 5374 1476 192 7 7 chr6 33342593 33342885 -155936669 - AluJb SINE Alu -20 292 1 414 286 118 16 chr6 33342928 33343173 -155936381 - L1ME3 LINE L1 -261 5901 5632 268 329 31 39 chr6 33343304 33343590 -155935964 + L1MC4a LINE L1 5770 6053 -1755 717 142 9 0 chr6 33344530 33344636 -155934918 + MER5A DNA MER1_type 3 109 -80 251 256 26 68 chr6 33344562 33344679 -155934875 - MER5A DNA MER1_type -23 166 55 * 401 277 30 136 chr6 33344848 33345039 -155934515 + L2 LINE L2 2970 3111 -161 414 39 0 0 chr6 33345039 33345091 -155934463 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 401 277 30 136 chr6 33345091 33345238 -155934316 + L2 LINE L2 3111 3272 0 1444 178 14 10 chr6 33345519 33345811 -155933743 + AluJb SINE Alu 1 293 -19 1234 205 40 44 chr6 33346530 33346827 -155932727 + AluJo SINE Alu 1 296 -6 589 297 158 27 chr6 33347143 33347422 -155932132 - L1ME4a LINE L1 -207 5914 5584 1764 122 0 0 chr6 33347422 33347676 -155931878 - AluSx SINE Alu -12 300 47 589 297 158 27 chr6 33347676 33347726 -155931828 - L1ME4a LINE L1 -537 5584 5542 781 312 122 25 chr6 33347731 33348451 -155931103 - L2 LINE L2 -6 3307 2513 2251 91 0 0 chr6 33348554 33348861 -155930693 + AluSg SINE Alu 1 307 -3 534 216 0 0 chr6 33349763 33349939 -155929615 + (CA)n Simple_repeat Simple_repeat 1 176 0 7643 34 0 0 chr6 33350756 33352450 -155927104 - L1PA3 LINE L1 0 6155 4504 904 139 52 17 chr6 33352929 33353101 -155926453 - FRAM SINE Alu -1 175 1 325 278 7 76 chr6 33353392 33353536 -155926018 + L1ME1 LINE L1 6027 6160 -6 207 273 0 65 chr6 33353829 33353906 -155925648 + CT-rich Low_complexity Low_complexity 1 72 0 202 255 20 71 chr6 33355104 33355202 -155924352 + MIR3 SINE MIR 6 98 -110 426 194 0 0 chr6 33355511 33355583 -155923971 + FRAM/FAM SINE Alu 1 71 -105 949 125 230 5 chr6 33357317 33357517 -155922037 - L1MB3 LINE L1 -1 6182 5938 * 2063 200 32 13 chr6 33357507 33357757 -155921797 - L1MB3 LINE L1 -456 5727 5483 240 35 0 0 chr6 33357757 33357786 -155921768 + (TG)n Simple_repeat Simple_repeat 2 30 0 2063 200 32 13 chr6 33357786 33358353 -155921201 - L1MB3 LINE L1 -700 5483 4899 1369 317 14 23 chr6 33361727 33362288 -155917266 - BaEV-int LTR ERV1 -138 7647 7092 300 53 0 0 chr6 33362289 33362327 -155917227 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 328 333 0 0 chr6 33362384 33362474 -155917080 + L1MC4 LINE L1 6614 6703 -1339 471 291 49 68 chr6 33362550 33363163 -155916391 - BaEV-int LTR ERV1 -1159 5490 3368 300 333 0 8 chr6 33363628 33363760 -155915794 - BaEV-int LTR ERV1 -2101 5684 5554 2433 81 0 3 chr6 33363900 33364197 -155915357 - AluY SINE Alu -15 296 1 676 312 42 8 chr6 33364434 33364697 -155914857 - BaEV-int LTR ERV1 -3214 4571 4300 400 240 293 5 chr6 33365455 33365663 -155913891 + MER102a DNA MER1_type 60 327 -3 365 165 35 24 chr6 33366200 33366285 -155913269 - LTR18B LTR ERVL -261 353 268 285 154 19 0 chr6 33366335 33366387 -155913167 - LTR18B LTR ERVL -216 398 346 186 43 0 0 chr6 33366387 33366410 -155913144 + (TC)n Simple_repeat Simple_repeat 1 23 0 793 346 19 21 chr6 33366425 33367046 -155912508 - BaEV-int LTR ERV1 -4957 1692 1073 6835 50 9 0 chr6 33367060 33368379 -155911175 - L1PA7 LINE L1 -10 6144 4861 476 311 5 26 chr6 33368640 33368830 -155910724 - BaEV-int LTR ERV1 -6815 970 785 515 264 14 10 chr6 33368830 33369038 -155910516 - L1M4 LINE L1 -2688 3458 3250 4101 253 45 30 chr6 33369043 33370299 -155909255 + MER21B-int LTR ERV1 2868 4141 -50 505 248 109 7 chr6 33370397 33370534 -155909020 + MER21B LTR ERV1 19 169 -694 1785 198 65 8 chr6 33370553 33370952 -155908602 - MSTB1 LTR MaLR 0 432 11 2058 251 32 16 chr6 33370962 33371527 -155908027 - MSTA-int LTR MaLR 0 1651 1078 2506 184 13 0 chr6 33371536 33372009 -155907545 - MSTA-int LTR MaLR -1172 479 1 2285 171 41 7 chr6 33372009 33372423 -155907131 - MSTA LTR MaLR 0 428 1 1486 175 3 31 chr6 33375309 33375595 -155903959 - AluJo SINE Alu -23 289 12 359 303 67 0 chr6 33375968 33376087 -155903467 + L2 LINE L2 2639 2765 -549 459 268 24 8 chr6 33376095 33376218 -155903336 + L2 LINE L2 3188 3312 -1 2094 226 71 22 chr6 33376374 33376955 -155902599 - MLT1E3 LTR MaLR -2 622 14 1714 235 35 58 chr6 33377166 33377570 -155901984 - MLT1F1 LTR MaLR 0 567 177 2124 118 4 0 chr6 33377570 33377885 -155901669 - AluSg SINE Alu 0 318 3 1714 235 35 58 chr6 33377885 33378045 -155901509 - MLT1F1 LTR MaLR -390 177 15 231 103 0 0 chr6 33378155 33378194 -155901360 + (TTAG)n Simple_repeat Simple_repeat 2 40 0 690 189 0 30 chr6 33378194 33378326 -155901228 - AluJb SINE Alu -26 286 159 2047 127 3 0 chr6 33379429 33379740 -155899814 + AluSq SINE Alu 1 312 0 297 285 143 29 chr6 33379996 33380281 -155899273 - L1ME LINE L1 -301 5869 5552 182 298 18 0 chr6 33380591 33380648 -155898906 - L2 LINE L2 -1477 1837 1780 352 218 0 0 chr6 33380709 33380787 -155898767 - MLT1F1 LTR MaLR -2 565 488 622 332 33 10 chr6 33380903 33381292 -155898262 - LTR16B LTR ERVL -4 460 63 263 282 66 44 chr6 33381300 33381481 -155898073 - HERV16 LTR ERVL -504 5260 5076 192 97 0 0 chr6 33381691 33381722 -155897832 + (CATA)n Simple_repeat Simple_repeat 2 32 0 200 128 0 26 chr6 33381723 33381762 -155897792 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 257 275 49 63 chr6 33381786 33381928 -155897626 - HERV16 LTR ERVL -534 4462 4323 678 341 12 4 chr6 33382189 33382444 -155897110 - HERV16 LTR ERVL -1290 4364 4108 1931 328 76 43 chr6 33382568 33384227 -155895327 - HERV16 LTR ERVL -1900 3096 1749 394 117 0 1 chr6 33384478 33384562 -155894992 + MER30B DNA MER1_type 140 230 0 197 313 70 17 chr6 33384565 33384680 -155894874 + L2 LINE L2 3191 3311 -2 192 275 43 29 chr6 33384692 33384761 -155894793 - L3 LINE CR1 -550 1027 958 210 270 140 20 chr6 33390101 33390201 -155889353 + L2 LINE L2 2650 2761 -553 1688 226 96 46 chr6 33390433 33390690 -155888864 - MLT1E3 LTR MaLR -51 573 330 2219 83 20 10 chr6 33390690 33390991 -155888563 - AluY SINE Alu -7 304 1 1688 226 96 46 chr6 33390991 33391277 -155888277 - MLT1E3 LTR MaLR -294 330 3 1429 227 25 0 chr6 33391440 33391726 -155887828 + AluJo SINE Alu 1 293 -19 1975 222 44 28 chr6 33391797 33392242 -155887312 - MLT1F1 LTR MaLR -8 559 102 2257 149 5 24 chr6 33392242 33392624 -155886930 - THE1C LTR MaLR 0 375 1 1975 222 44 28 chr6 33392624 33392723 -155886831 - MLT1F1 LTR MaLR -465 102 6 6424 82 38 25 chr6 33392811 33393810 -155885744 - L1PA10 LINE L1 -5 6163 5164 3532 118 24 4 chr6 33394639 33395140 -155884414 + MER9 LTR ERVK 1 511 0 363 248 31 28 chr6 33395181 33395289 -155884265 + L1MC4 LINE L1 1970 6983 -1339 356 322 0 0 chr6 33395295 33395385 -155884169 - L1MC4 LINE L1 -1339 6703 6614 * 362 311 0 0 chr6 33395321 33395411 -155884143 + L1MC4 LINE L1 6614 6703 -1339 357 319 119 7 chr6 33395521 33395831 -155883723 - L1ME3A LINE L1 -298 5872 5528 231 252 19 9 chr6 33396070 33396177 -155883377 + GA-rich Low_complexity Low_complexity 3 110 0 297 308 0 33 chr6 33396190 33396619 -155882935 + GA-rich Low_complexity Low_complexity 1 116 0 301 256 22 0 chr6 33396223 33396249 -155883305 + A-rich Low_complexity Low_complexity 5 29 -67 2533 84 3 0 chr6 33396249 33396559 -155882995 + AluY SINE Alu 1 311 0 301 256 22 0 chr6 33396559 33396622 -155882932 + A-rich Low_complexity Low_complexity 29 96 0 313 143 0 0 chr6 33396728 33396777 -155882777 - MLT1F LTR MaLR -3 539 491 350 280 89 19 chr6 33397281 33397438 -155882116 - ERVL LTR ERVL -3608 2156 1989 9959 30 0 198 chr6 33397601 33399325 -155880229 - SVA Other Other -3 1383 1 234 0 0 0 chr6 33399325 33399351 -155880203 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 406 117 0 1 chr6 33399606 33399690 -155879864 + MER30B DNA MER1_type 140 230 0 200 316 79 18 chr6 33399693 33399807 -155879747 + L2 LINE L2 3191 3311 -2 260 301 90 38 chr6 33399816 33399949 -155879605 - L3 LINE CR1 -550 1027 888 204 40 0 0 chr6 33399956 33399981 -155879573 + (TCCC)n Simple_repeat Simple_repeat 2 26 0 3954 175 65 47 chr6 33400447 33401384 -155878170 + LTR13 LTR ERVK 1 954 0 222 151 0 38 chr6 33404176 33404229 -155875325 + C-rich Low_complexity Low_complexity 3 53 0 214 284 161 0 chr6 33406405 33406486 -155873068 + L2 LINE L2 2668 2761 -553 201 178 89 0 chr6 33406534 33406579 -155872975 + L2 LINE L2 3265 3313 0 2096 216 79 54 chr6 33406703 33406776 -155872778 - MLT1E3 LTR MaLR 0 624 554 1389 231 14 10 chr6 33406776 33407071 -155872483 - AluJo SINE Alu -16 296 1 2096 216 79 54 chr6 33407071 33407604 -155871950 - MLT1E3 LTR MaLR -70 554 3 1622 209 0 3 chr6 33407766 33408063 -155871491 + AluJb SINE Alu 1 296 -16 1993 234 45 27 chr6 33408127 33408579 -155870975 - MLT1F1 LTR MaLR 0 567 102 2179 121 55 25 chr6 33408579 33408943 -155870611 - THE1C LTR MaLR 0 375 1 1993 234 45 27 chr6 33408943 33409042 -155870512 - MLT1F1 LTR MaLR -465 102 6 6476 94 5 4 chr6 33409127 33410672 -155868882 - L1PA10 LINE L1 -5 6163 4619 469 77 0 0 chr6 33411026 33411091 -155868463 + MER41B LTR ERV1 483 547 -88 219 69 0 0 chr6 33411988 33412017 -155867537 + (TA)n Simple_repeat Simple_repeat 2 30 0 434 265 144 44 chr6 33412098 33412396 -155867158 - L1ME3A LINE L1 -298 5872 5545 343 191 39 39 chr6 33412622 33412800 -155866754 + GA-rich Low_complexity Low_complexity 3 180 0 400 208 0 0 chr6 33412940 33413017 -155866537 - MLT1F1 LTR MaLR 0 567 491 850 309 40 16 chr6 33413139 33413517 -155866037 - LTR16B LTR ERVL -5 459 73 347 330 55 42 chr6 33413535 33414011 -155865543 - HERV16 LTR ERVL -504 5260 4779 539 306 93 44 chr6 33414621 33415006 -155864548 - HERV16 LTR ERVL -900 4393 3693 * 3184 338 41 29 chr6 33415005 33417473 -155862081 - HERV16 LTR ERVL -1900 3096 858 770 327 65 18 chr6 33418164 33418607 -155860947 - LTR16B LTR ERVL 0 464 1 2574 270 154 29 chr6 33418607 33419451 -155860103 - L2 LINE L2 -1658 1656 919 1933 227 94 26 chr6 33419451 33420037 -155859517 - MLT1E2 LTR MaLR 0 626 1 2574 270 154 29 chr6 33420037 33420648 -155858906 - L2 LINE L2 -2395 919 18 1956 158 80 3 chr6 33421866 33422215 -155857339 - Tigger1 DNA MER2_type 0 2418 2043 238 328 0 0 chr6 33425453 33425517 -155854037 - MER82 DNA MER2_type -91 562 499 186 103 0 0 chr6 33426925 33426954 -155852600 + (CA)n Simple_repeat Simple_repeat 2 30 0 306 246 36 9 chr6 33426998 33427011 -155852543 - L1MA4A LINE L1 -1 6302 6290 691 251 5 15 chr6 33427011 33427206 -155852348 - L1PB4 LINE L1 0 6156 5964 843 224 228 3 chr6 33427428 33427778 -155851776 + Charlie1 DNA MER1_type 33 1767 -994 1919 196 54 59 chr6 33427786 33428530 -155851024 - L1MC/D LINE L1 -596 5763 5016 590 182 0 0 chr6 33428559 33428658 -155850896 - FLAM_A SINE Alu -43 99 1 626 236 5 48 chr6 33428664 33428872 -155850682 - L1MC/D LINE L1 -1113 5033 4835 4490 229 122 44 chr6 33428873 33429494 -155850060 - L1M4 LINE L1 -816 5330 4759 2176 74 51 0 chr6 33429494 33429790 -155849764 - AluY SINE Alu 0 311 1 4490 229 122 44 chr6 33429790 33431106 -155848448 - L1M4 LINE L1 -1387 4759 3242 1709 272 30 45 chr6 33431112 33431686 -155847868 + MER21B-int LTR ERV1 2880 3444 -747 1910 241 21 24 chr6 33431825 33432336 -155847218 + MER21B-int LTR ERV1 3632 4141 -50 546 261 78 14 chr6 33432435 33432577 -155846977 + MER21B LTR ERV1 19 169 -694 1710 205 71 15 chr6 33432596 33433005 -155846549 - MSTB1 LTR MaLR 0 432 1 2108 239 27 34 chr6 33433021 33433582 -155845972 - MSTB1-int LTR MaLR -17 1634 1078 970 218 0 0 chr6 33433592 33433785 -155845769 - MSTB1-int LTR MaLR -1172 479 287 1001 148 0 0 chr6 33433786 33433941 -155845613 - MSTA LTR MaLR -273 155 1 6833 82 54 4 chr6 33435611 33436587 -155842967 + SVA Other Other 146 1170 -216 204 40 0 0 chr6 33436587 33436612 -155842942 + (A)n Simple_repeat Simple_repeat 1 25 0 2026 139 0 0 chr6 33437271 33437580 -155841974 - AluSg SINE Alu -1 309 1 1930 116 4 0 chr6 33437727 33438003 -155841551 + AluSq SINE Alu 1 277 -36 210 37 0 0 chr6 33438004 33438031 -155841523 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 513 156 21 0 chr6 33438317 33438413 -155841141 - AluSp/q SINE Alu -15 298 201 1767 336 48 34 chr6 33438499 33439547 -155840007 - HERV16 LTR ERVL -1900 3096 2035 381 193 0 0 chr6 33439937 33439994 -155839560 + MER30 DNA MER1_type 172 228 -2 190 330 70 17 chr6 33439999 33440114 -155839440 + L2 LINE L2 3191 3311 -2 22 0 0 0 chr6 33444068 33444090 -155835464 + GC_rich Low_complexity Low_complexity 1 22 0 195 100 0 0 chr6 33444728 33444758 -155834796 + (T)n Simple_repeat Simple_repeat 1 30 0 206 260 40 0 chr6 33445588 33445638 -155833916 + L2 LINE L2 2710 2761 -553 184 265 0 0 chr6 33445686 33445735 -155833819 + L2 LINE L2 3265 3313 0 1810 224 88 47 chr6 33445871 33446132 -155833422 - MLT1E3 LTR MaLR -52 572 323 2087 96 0 46 chr6 33446132 33446455 -155833099 - AluYa5 SINE Alu -3 308 1 1810 224 88 47 chr6 33446455 33446741 -155832813 - MLT1E3 LTR MaLR -301 323 3 1301 219 25 0 chr6 33446905 33447184 -155832370 + AluJb SINE Alu 2 287 -25 2197 215 43 27 chr6 33447257 33447710 -155831844 - MLT1F1 LTR MaLR 0 567 102 2346 133 5 24 chr6 33447710 33448092 -155831462 - THE1C LTR MaLR 0 375 1 2197 215 43 27 chr6 33448092 33448191 -155831363 - MLT1F1 LTR MaLR -465 102 6 6436 88 30 17 chr6 33448297 33449295 -155830259 - L1PA10 LINE L1 -5 6163 5164 3583 131 0 4 chr6 33450140 33450652 -155828902 + MER9 LTR ERVK 2 511 0 369 0 0 0 chr6 33450718 33450759 -155828795 + (TA)n Simple_repeat Simple_repeat 2 42 0 281 298 152 42 chr6 33450779 33451161 -155828393 - L1ME3A LINE L1 -219 5951 5528 263 204 46 9 chr6 33451394 33451502 -155828052 + GA-rich Low_complexity Low_complexity 3 114 0 281 301 0 29 chr6 33451515 33451574 -155827980 + GA-rich Low_complexity Low_complexity 1 57 -43 2173 109 0 3 chr6 33451574 33451876 -155827678 + AluY SINE Alu 1 301 -10 281 301 0 29 chr6 33451876 33451919 -155827635 + GA-rich Low_complexity Low_complexity 57 100 0 393 130 32 2 chr6 33452029 33452101 -155827453 - MLT1F LTR MaLR -3 539 476 646 311 57 18 chr6 33452220 33452603 -155826951 - LTR16B LTR ERVL -5 459 62 1194 366 41 23 chr6 33452611 33453707 -155825847 - ERVL LTR ERVL -504 5260 4145 581 328 90 3 chr6 33453819 33454130 -155825424 - ERVL LTR ERVL -2240 3524 3187 3027 315 36 42 chr6 33454165 33454429 -155825125 - ERVL LTR ERVL -1900 3096 2832 2078 116 3 0 chr6 33454429 33454722 -155824832 - AluSp SINE Alu -19 294 1 3027 315 36 42 chr6 33454722 33455896 -155823658 - ERVL LTR ERVL -2164 2832 1666 267 328 57 24 chr6 33455986 33456233 -155823321 - ERVL LTR ERVL -4098 1556 1302 581 339 41 22 chr6 33456258 33456577 -155822977 - ERVL LTR ERVL -3819 1177 853 295 373 66 29 chr6 33456712 33457256 -155822298 - ERVL LTR ERVL -4430 566 3 531 292 65 19 chr6 33457258 33457518 -155822036 - LTR16B LTR ERVL 0 464 193 1995 232 47 123 chr6 33457695 33458711 -155820843 - L2 LINE L2 -1657 1657 719 1852 245 87 19 chr6 33458742 33459318 -155820236 - MLT1E2 LTR MaLR -11 615 1 1609 276 104 8 chr6 33459320 33459942 -155819612 - L2 LINE L2 -2615 699 18 1981 152 83 3 chr6 33461128 33461476 -155818078 - Tigger1 DNA MER2_type 0 2418 2043 188 367 0 51 chr6 33461507 33461586 -155817968 + MIR SINE MIR 23 97 -165 347 315 163 0 chr6 33462917 33463101 -155816453 + MIR SINE MIR 22 235 -27 2182 99 0 3 chr6 33463132 33463435 -155816119 - AluSq SINE Alu -11 302 1 1058 158 21 16 chr6 33466042 33466232 -155813322 - MLT1B LTR MaLR 0 390 200 227 182 0 109 chr6 33466223 33466278 -155813276 - MLT1B LTR MaLR -341 49 1 * 6135 171 24 39 chr6 33466713 33466878 -155812676 - L1MA4A LINE L1 0 6303 6137 2281 76 0 35 chr6 33466878 33467193 -155812361 - AluY SINE Alu -7 304 1 6135 171 24 39 chr6 33467193 33468865 -155810689 - L1MA4A LINE L1 -166 6137 4441 792 197 0 0 chr6 33468865 33468997 -155810557 - FLAM_C SINE Alu 0 133 2 6135 171 24 39 chr6 33468997 33469253 -155810301 - L1MA4A LINE L1 -1862 4441 4252 2417 58 0 19 chr6 33469253 33469563 -155809991 - AluY SINE Alu -7 304 1 6135 171 24 39 chr6 33469563 33469841 -155809713 - L1MA4A LINE L1 -2051 4252 3971 25 0 0 0 chr6 33469857 33469882 -155809672 + AT_rich Low_complexity Low_complexity 1 25 0 1883 267 92 11 chr6 33469910 33470607 -155808947 - L1ME2 LINE L1 -1 6163 5411 242 259 0 0 chr6 33471127 33471181 -155808373 + Tigger6 DNA MER2_type 2 55 -1028 207 0 0 0 chr6 33471271 33471294 -155808260 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1281 236 0 4 chr6 33471297 33471577 -155807977 - AluJb SINE Alu -33 279 1 486 284 109 35 chr6 33471581 33471873 -155807681 - L1ME3 LINE L1 -233 5937 5624 364 241 30 91 chr6 33471999 33472231 -155807323 + L1MC4a LINE L1 5779 5996 -1812 390 295 131 11 chr6 33473928 33474111 -155805443 + MIR SINE MIR 19 223 -39 24 77 0 0 chr6 33474111 33474163 -155805391 + AT_rich Low_complexity Low_complexity 1 52 0 421 251 30 99 chr6 33475303 33475566 -155803988 - HAL1 LINE L1 0 2507 2263 38 22 0 0 chr6 33475606 33475651 -155803903 + AT_rich Low_complexity Low_complexity 1 45 0 552 277 72 18 chr6 33476279 33476557 -155802997 - HAL1 LINE L1 -415 2092 1800 1988 210 51 9 chr6 33476815 33477282 -155802272 - L1MB2 LINE L1 0 6171 5685 216 91 18 55 chr6 33479199 33479254 -155800300 + (CCCG)n Simple_repeat Simple_repeat 1 53 0 30 59 0 0 chr6 33479261 33479312 -155800242 + GC_rich Low_complexity Low_complexity 1 51 0 207 180 31 87 chr6 33479317 33479478 -155800076 + (CCCGG)n Simple_repeat Simple_repeat 5 156 0 25 95 0 0 chr6 33479578 33479652 -155799902 + GC_rich Low_complexity Low_complexity 1 74 0 52 50 0 0 chr6 33479701 33479781 -155799773 + GC_rich Low_complexity Low_complexity 1 80 0 360 263 160 62 chr6 33480091 33480615 -155798939 + L1M4 LINE L1 707 1377 -5472 372 22 0 0 chr6 33482826 33482871 -155796683 + (A)n Simple_repeat Simple_repeat 1 45 0 535 261 69 57 chr6 33482871 33483277 -155796277 - L1MC5 LINE L1 -460 7501 7091 246 279 74 42 chr6 33483308 33483523 -155796031 + L1M4 LINE L1 4424 4645 -2203 720 258 0 6 chr6 33483556 33483734 -155795820 - MLT1D LTR MaLR -328 177 1 2019 179 46 73 chr6 33483874 33484437 -155795117 - LTR10A LTR ERV1 -61 548 1 447 331 77 23 chr6 33484451 33484803 -155794751 + L1M4c LINE L1 1398 1834 -4612 246 331 75 38 chr6 33484905 33485065 -155794489 + L2 LINE L2 3144 3309 -4 2138 87 13 0 chr6 33485226 33485524 -155794030 + AluSp SINE Alu 1 302 -11 224 231 62 31 chr6 33485525 33485590 -155793964 - MER5A DNA MER1_type -32 157 80 3719 226 69 75 chr6 33485592 33485882 -155793672 + L1M4 LINE L1 86 376 -6270 1877 176 0 0 chr6 33485882 33486194 -155793360 + AluJb SINE Alu 1 312 0 3719 226 69 75 chr6 33486194 33487728 -155791826 + L1M4 LINE L1 376 1950 -4696 203 161 0 0 chr6 33487752 33487783 -155791771 + (CATATA)n Simple_repeat Simple_repeat 6 36 0 1792 211 19 24 chr6 33487824 33488250 -155791304 + L1MB5 LINE L1 5743 6166 -8 230 93 74 0 chr6 33489003 33489057 -155790497 + (TA)n Simple_repeat Simple_repeat 1 58 0 797 204 72 0 chr6 33489282 33489434 -155790120 - FAM SINE Alu -12 163 1 305 309 134 56 chr6 33489706 33489784 -155789770 - L1ME4a LINE L1 -141 5980 5910 1599 141 8 8 chr6 33489784 33490040 -155789514 - AluSx SINE Alu -22 290 35 305 309 134 56 chr6 33490040 33490281 -155789273 - L1ME4a LINE L1 -211 5910 5636 1454 169 47 7 chr6 33490291 33490569 -155788985 + AluJb SINE Alu 5 293 -19 1659 219 135 9 chr6 33490602 33490737 -155788817 + MLT2B3 LTR ERVL 78 195 -359 300 83 0 0 chr6 33490737 33490785 -155788769 + (TCTCTG)n Simple_repeat Simple_repeat 1 48 0 1659 219 135 9 chr6 33490785 33491032 -155788522 + MLT2B3 LTR ERVL 195 520 -34 716 40 56 0 chr6 33491032 33491157 -155788397 + (TCTA)n Simple_repeat Simple_repeat 4 135 0 1659 219 135 9 chr6 33491157 33491194 -155788360 + MLT2B3 LTR ERVL 520 551 -3 480 302 94 38 chr6 33491194 33491772 -155787782 - L2 LINE L2 -132 3181 2569 1599 184 48 99 chr6 33491772 33491809 -155787745 - L1P5 LINE L1 -694 5457 5420 3001 182 43 19 chr6 33491809 33492480 -155787074 - L1MB4 LINE L1 -1 6179 5493 1599 184 48 99 chr6 33492480 33492717 -155786837 - L1P5 LINE L1 -731 5420 5173 2368 93 0 0 chr6 33492717 33493029 -155786525 - AluSx SINE Alu 0 312 1 1599 184 48 99 chr6 33493029 33493336 -155786218 - L1P5 LINE L1 -978 5173 4904 328 267 180 16 chr6 33494827 33494961 -155784593 + MIR SINE MIR 14 165 -59 490 210 179 31 chr6 33494967 33495129 -155784425 - MER20 DNA MER1_type -2 217 32 850 213 38 0 chr6 33495641 33495801 -155783753 + FRAM SINE Alu 1 164 -12 395 250 109 31 chr6 33495882 33495979 -155783575 - L1MEc LINE L1 -3829 2399 2311 213 39 0 0 chr6 33495979 33496005 -155783549 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 395 250 109 31 chr6 33496005 33496170 -155783384 - L1MEc LINE L1 -3917 2311 2145 1267 295 108 9 chr6 33496488 33497192 -155782362 + L2 LINE L2 2381 3147 -166 929 120 44 85 chr6 33497239 33497471 -155782083 + MER30B DNA MER1_type 1 230 0 215 330 70 17 chr6 33497474 33497589 -155781965 + L2 LINE L2 3191 3311 -2 2015 116 24 3 chr6 33498053 33498346 -155781208 + AluSc SINE Alu 1 299 -10 22 0 0 0 chr6 33501789 33501811 -155777743 + GC_rich Low_complexity Low_complexity 1 22 0 209 283 206 22 chr6 33503176 33503356 -155776198 + L2 LINE L2 2553 2765 -549 1872 239 61 48 chr6 33503584 33503663 -155775891 - MLT1E3 LTR MaLR 0 624 548 1251 197 45 35 chr6 33503663 33503952 -155775602 - AluJo SINE Alu -20 292 1 1872 239 61 48 chr6 33503952 33504475 -155775079 - MLT1E3 LTR MaLR -76 548 14 1562 171 14 11 chr6 33504648 33504934 -155774620 + AluJb SINE Alu 1 287 -25 1929 216 42 20 chr6 33505006 33505459 -155774095 - MLT1F1 LTR MaLR 0 567 105 1409 109 5 19 chr6 33505460 33505671 -155773883 - THE1C LTR MaLR 0 375 168 1814 96 12 0 chr6 33505671 33505922 -155773632 + L1PA10 LINE L1 5779 6032 -136 632 161 31 62 chr6 33505940 33506070 -155773484 - THE1C LTR MaLR -249 126 1 401 262 39 0 chr6 33506070 33506169 -155773385 - MLT1F1 LTR MaLR -459 108 6 6332 94 5 1 chr6 33506226 33506252 -155773302 - L1PA10 LINE L1 0 6168 6144 252 0 0 0 chr6 33506252 33506280 -155773274 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 6332 94 5 1 chr6 33506280 33507804 -155771750 - L1PA10 LINE L1 -24 6144 4619 292 67 100 17 chr6 33508158 33508218 -155771336 + MER41B LTR ERV1 483 547 -88 520 108 0 0 chr6 33509190 33509273 -155770281 - L1 LINE L1 -1302 4844 4762 405 287 140 27 chr6 33509420 33509713 -155769841 - L1ME3A LINE L1 -298 5872 5547 415 0 0 0 chr6 33509713 33509759 -155769795 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 1335 113 6 0 chr6 33509759 33509936 -155769618 - AluSx SINE Alu -28 284 107 1062 53 8 0 chr6 33509937 33510069 -155769485 + LTR3b LTR ERVK 3 135 -365 504 164 135 10 chr6 33510068 33510172 -155769382 + LTR3b LTR ERVK 316 432 -5 * 904 106 0 0 chr6 33510181 33510294 -155769260 - AluSx SINE Alu -200 113 1 289 214 28 39 chr6 33510569 33510747 -155768807 + GA-rich Low_complexity Low_complexity 1 176 0 381 164 14 0 chr6 33510891 33510964 -155768590 - MLT1F1 LTR MaLR -3 564 491 697 304 49 23 chr6 33511082 33511470 -155768084 - LTR16B LTR ERVL -5 459 62 916 319 65 42 chr6 33511784 33512668 -155766886 - HERV16 LTR ERVL -808 4956 3710 1478 346 33 32 chr6 33512779 33513846 -155765708 - HERV16 LTR ERVL -1900 3096 2310 359 290 137 16 chr6 33517197 33517380 -155762174 + MIR SINE MIR 19 223 -39 25 65 0 0 chr6 33517380 33517426 -155762128 + AT_rich Low_complexity Low_complexity 1 46 0 240 170 0 0 chr6 33518565 33518618 -155760936 + (CA)n Simple_repeat Simple_repeat 2 54 0 584 274 9 50 chr6 33518672 33518891 -155760663 - L1PB4 LINE L1 -1 6155 5946 898 210 188 4 chr6 33519096 33519435 -155760119 + Charlie1 DNA MER1_type 38 1743 -1018 2046 205 68 26 chr6 33519461 33520193 -155759361 - L1MC/D LINE L1 -594 5765 4992 600 184 0 0 chr6 33520204 33520302 -155759252 - FLAM_A SINE Alu -44 98 1 589 261 11 6 chr6 33520329 33520505 -155759049 - L1MC/D LINE L1 -1128 5018 4842 * 4855 241 121 26 chr6 33520486 33522403 -155757151 - L1M4 LINE L1 -798 5348 3251 3679 259 53 42 chr6 33522404 33522750 -155756804 + MER21B-int LTR ERV1 2868 3209 -982 2284 109 3 0 chr6 33522750 33523052 -155756502 + AluSx SINE Alu 1 303 -9 3679 259 53 42 chr6 33523052 33523957 -155755597 + MER21B-int LTR ERV1 3209 4133 -58 497 281 75 12 chr6 33524063 33524223 -155755331 + MER21B LTR ERV1 19 188 -675 1841 206 66 7 chr6 33524223 33524631 -155754923 - MSTB1 LTR MaLR 0 432 1 2233 242 33 28 chr6 33524631 33525202 -155754352 - MSTB1-int LTR MaLR 0 1651 1078 2817 168 8 0 chr6 33525211 33525686 -155753868 - MSTB1-int LTR MaLR -1172 479 1 479 113 0 0 chr6 33525686 33525757 -155753797 - MSTA LTR MaLR 0 428 358 28 0 0 0 chr6 33526609 33526637 -155752917 + AT_rich Low_complexity Low_complexity 1 28 0 2096 164 36 8 chr6 33526666 33527026 -155752528 - MSTA LTR MaLR -58 370 1 228 234 0 0 chr6 33527790 33527837 -155751717 - L1MA10 LINE L1 -103 6231 6185 1694 168 0 32 chr6 33529895 33530210 -155749344 - AluJo SINE Alu -7 305 1 2507 42 3 22 chr6 33530280 33530591 -155748963 - AluY SINE Alu -6 305 1 290 312 43 22 chr6 33530860 33530998 -155748556 + L2 LINE L2 2625 2765 -549 397 272 16 8 chr6 33531006 33531131 -155748423 + L2 LINE L2 3188 3313 0 2218 241 68 19 chr6 33531290 33531878 -155747676 - MLT1E3 LTR MaLR -2 622 6 22 0 0 0 chr6 33531981 33532003 -155747551 + AT_rich Low_complexity Low_complexity 1 22 0 2140 229 51 22 chr6 33532081 33532627 -155746927 - MLT1F1 LTR MaLR 0 567 6 2254 127 0 6 chr6 33533733 33534227 -155745327 + AluSq SINE Alu 1 313 0 597 64 0 0 chr6 33534228 33534306 -155745248 + (GGAA)n Simple_repeat Simple_repeat 2 79 0 330 331 116 3 chr6 33534574 33534858 -155744696 - L1ME3A LINE L1 -301 5869 5554 204 125 0 0 chr6 33535113 33535145 -155744409 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 361 218 0 0 chr6 33535285 33535363 -155744191 - MLT1F1 LTR MaLR -2 565 488 864 304 39 13 chr6 33535475 33535857 -155743697 - LTR16B LTR ERVL -4 460 69 350 354 42 29 chr6 33536113 33536568 -155742986 - ERVL LTR ERVL -786 4978 4518 204 157 0 39 chr6 33536880 33536931 -155742623 + C-rich Low_complexity Low_complexity 5 53 0 1855 246 88 21 chr6 33539277 33539802 -155739752 - MLT1E3 LTR MaLR -51 573 14 1579 183 3 14 chr6 33539975 33540289 -155739265 + AluJb SINE Alu 1 311 0 1964 243 47 27 chr6 33540341 33540792 -155738762 - MLT1F1 LTR MaLR 0 567 102 2182 152 5 24 chr6 33540792 33541174 -155738380 - THE1C LTR MaLR 0 375 1 1964 243 47 27 chr6 33541174 33541273 -155738281 - MLT1F1 LTR MaLR -465 102 6 6068 102 16 5 chr6 33541351 33542883 -155736671 - L1PA10 LINE L1 -2 6166 4624 342 93 19 0 chr6 33543250 33543304 -155736250 + MER41B LTR ERV1 493 547 -88 42179 56 14 1 chr6 33543992 33550039 -155729515 - L1PA6 LINE L1 -6 6148 22 1670 228 70 50 chr6 33550209 33550286 -155729268 - MLT1E3 LTR MaLR 0 614 540 1224 227 38 34 chr6 33550286 33550577 -155728977 - AluJo SINE Alu -20 292 1 1670 228 70 50 chr6 33550577 33551111 -155728443 - MLT1E3 LTR MaLR -74 540 3 1329 216 3 21 chr6 33551275 33551566 -155727988 + AluJb SINE Alu 2 287 -25 1922 221 99 27 chr6 33551639 33552061 -155727493 - MLT1F1 LTR MaLR 0 567 100 2050 142 34 47 chr6 33552061 33552441 -155727113 - THE1C LTR MaLR 0 375 1 1922 221 99 27 chr6 33552441 33552534 -155727020 - MLT1F1 LTR MaLR -467 100 15 6550 90 30 0 chr6 33552618 33554132 -155725422 - L1PA10 LINE L1 0 6168 4619 397 157 0 0 chr6 33554475 33554545 -155725009 + MER41B LTR ERV1 480 549 -86 527 297 143 23 chr6 33555437 33555828 -155723726 - L1ME3A LINE L1 -205 5965 5528 2271 79 10 14 chr6 33555914 33556206 -155723348 - AluY SINE Alu -20 291 1 222 184 40 13 chr6 33556379 33556455 -155723099 + GA-rich Low_complexity Low_complexity 1 78 0 287 316 11 0 chr6 33556456 33556551 -155723003 + A-rich Low_complexity Low_complexity 2 97 0 451 162 0 0 chr6 33556661 33556735 -155722819 - MLT1F1 LTR MaLR -3 564 491 699 295 52 22 chr6 33556859 33557225 -155722329 - LTR16B LTR ERVL -26 438 62 644 375 56 26 chr6 33557246 33558317 -155721237 - MERVL LTR ERVL -280 5205 4103 2918 328 47 20 chr6 33558786 33560886 -155718668 - MERVL LTR ERVL -1900 3096 853 828 327 81 11 chr6 33561571 33562005 -155717549 - LTR16B LTR ERVL 0 464 1 1723 296 57 24 chr6 33562005 33562746 -155716808 - L2 LINE L2 -1658 1656 892 405 259 90 0 chr6 33562855 33563044 -155716510 - L2 LINE L2 -2411 903 698 1739 249 106 5 chr6 33563045 33563616 -155715938 - MLT1E2 LTR MaLR 0 626 1 1420 264 102 25 chr6 33563623 33564252 -155715302 - L2 LINE L2 -2620 694 18 1583 167 108 3 chr6 33565472 33565813 -155713741 - Tigger1 DNA MER2_type 0 2418 2042 2327 123 0 0 chr6 33568693 33568995 -155710559 - AluSx SINE Alu -10 302 1 949 329 30 16 chr6 33569109 33569537 -155710017 + LTR33 LTR ERVL 23 456 -65 612 211 0 8 chr6 33569654 33569777 -155709777 - FLAM_C SINE Alu -19 124 3 250 336 97 35 chr6 33572140 33572512 -155707042 - L2 LINE L2 -421 2893 2499 477 115 0 0 chr6 33573539 33573617 -155705937 + (CA)n Simple_repeat Simple_repeat 1 78 0 756 197 34 28 chr6 33574842 33575020 -155704534 - FRAM SINE Alu 0 176 1 2489 81 0 3 chr6 33575119 33575429 -155704125 + AluSq SINE Alu 5 313 0 2255 48 15 105 chr6 33575429 33575763 -155703791 + AluY SINE Alu 1 304 -7 451 238 0 86 chr6 33575958 33576109 -155703445 + L1ME1 LINE L1 6025 6162 -4 225 268 0 18 chr6 33576372 33576428 -155703126 + CT-rich Low_complexity Low_complexity 1 55 0 660 228 13 20 chr6 33578064 33578234 -155701320 + FRAM SINE Alu 1 169 0 668 223 29 11 chr6 33578301 33578476 -155701078 - MER5B DNA MER1_type 0 178 1 248 246 0 0 chr6 33578561 33578618 -155700936 - L1MB7 LINE L1 -17 6167 6111 287 269 13 0 chr6 33579265 33579343 -155700211 - L1MB7 LINE L1 -58 6126 6048 772 59 0 0 chr6 33579350 33579451 -155700103 - HY3 scRNA scRNA 0 101 1 188 35 35 0 chr6 33581163 33581192 -155698362 + (TCTCC)n Simple_repeat Simple_repeat 2 31 0 2247 123 3 0 chr6 33582365 33582674 -155696880 - AluY SINE Alu -1 310 1 1763 203 30 11 chr6 33582674 33582803 -155696751 - L1M3 LINE L1 -568 5615 5490 297 0 0 0 chr6 33582803 33582836 -155696718 + (TG)n Simple_repeat Simple_repeat 2 34 0 1763 203 30 11 chr6 33582836 33583413 -155696141 - L1M3 LINE L1 -693 5490 4899 478 282 141 0 chr6 33588095 33588265 -155691289 + MIR SINE MIR 30 223 -39 863 310 125 14 chr6 33589479 33590118 -155689436 - HAL1 LINE L1 0 2507 1798 181 273 78 0 chr6 33590166 33590243 -155689311 - MER5A DNA MER1_type -85 104 22 1754 202 104 13 chr6 33590371 33590842 -155688712 - L1MB2 LINE L1 -1 6170 5657 629 235 55 74 chr6 33592446 33592825 -155686729 - L1MC5 LINE L1 -509 7452 7081 526 243 77 12 chr6 33592834 33593032 -155686522 + L1ME3A LINE L1 5586 5791 -379 628 264 45 27 chr6 33593106 33593326 -155686228 + L1ME3A LINE L1 5932 6155 -15 2318 224 31 23 chr6 33593775 33594428 -155685126 + L1M4c LINE L1 997 1654 -4730 365 314 8 34 chr6 33594434 33594552 -155685002 - L1MC4 LINE L1 -1339 6703 6589 240 86 0 0 chr6 33594606 33594641 -155684913 + (TG)n Simple_repeat Simple_repeat 1 35 0 1854 197 23 32 chr6 33594746 33595182 -155684372 + L1MB5 LINE L1 5743 6174 0 26 50 0 0 chr6 33595923 33595963 -155683591 + AT_rich Low_complexity Low_complexity 1 40 0 998 161 0 0 chr6 33596195 33596338 -155683216 - FAM SINE Alu -29 156 14 2058 158 0 3 chr6 33596607 33596917 -155682637 - AluSx SINE Alu -3 309 1 304 315 35 42 chr6 33596932 33597075 -155682479 - L1ME4a LINE L1 -165 5956 5815 2051 114 3 10 chr6 33597076 33597366 -155682188 + AluSx SINE Alu 1 288 -24 1712 193 0 13 chr6 33597554 33597854 -155681700 + AluJb SINE Alu 1 296 -16 246 297 126 0 chr6 33597948 33598059 -155681495 - L2 LINE L2 0 3313 3189 2339 177 102 14 chr6 33598067 33598541 -155681013 + MLT2B3 LTR ERVL 1 523 -31 599 26 0 13 chr6 33598541 33598619 -155680935 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 2339 177 102 14 chr6 33598619 33598646 -155680908 + MLT2B3 LTR ERVL 523 546 -8 452 293 104 39 chr6 33598646 33599223 -155680331 - L2 LINE L2 -135 3178 2564 1621 186 30 19 chr6 33599223 33599265 -155680289 - L1M4 LINE L1 -721 5457 5417 3136 181 41 1 chr6 33599265 33599922 -155679632 - L1MB3 LINE L1 -8 6175 5493 1621 186 30 19 chr6 33599922 33600445 -155679109 - L1M4 LINE L1 -761 5417 4903 26 50 0 0 chr6 33600584 33600624 -155678930 + AT_rich Low_complexity Low_complexity 1 40 0 849 203 28 46 chr6 33601624 33601841 -155677713 - MER20 DNA MER1_type 0 219 7 604 330 94 27 chr6 33602260 33602663 -155676891 + L1MC5 LINE L1 7354 7783 -178 216 0 0 0 chr6 33603251 33603275 -155676279 + (CA)n Simple_repeat Simple_repeat 1 24 0 27 49 0 0 chr6 33603312 33603353 -155676201 + AT_rich Low_complexity Low_complexity 1 41 0 216 0 0 0 chr6 33606658 33606682 -155672872 + (CCCCCT)n Simple_repeat Simple_repeat 5 28 0 1284 75 0 0 chr6 33606928 33607101 -155672453 + (TTC)n Simple_repeat Simple_repeat 2 174 0 198 171 0 0 chr6 33607101 33607142 -155672412 + CT-rich Low_complexity Low_complexity 2 42 0 2526 46 30 0 chr6 33607277 33607579 -155671975 - AluY SINE Alu 0 311 1 223 328 30 0 chr6 33608283 33608350 -155671204 + L2 LINE L2 2686 2754 -560 326 129 32 0 chr6 33608590 33608652 -155670902 - MLT1E3 LTR MaLR 0 624 561 1121 223 19 52 chr6 33608652 33608961 -155670593 - AluJo SINE Alu -3 309 11 1923 236 82 17 chr6 33608971 33609506 -155670048 - MLT1E3 LTR MaLR -52 572 3 324 48 0 0 chr6 33609517 33609559 -155669995 + (T)n Simple_repeat Simple_repeat 1 42 0 6617 74 26 57 chr6 33609560 33610910 -155668644 - SVA Other Other -520 1385 -5 25 51 0 0 chr6 33610910 33610949 -155668605 + GC_rich Low_complexity Low_complexity 1 39 0 6617 74 26 57 chr6 33610949 33611901 -155667653 - SVA Other Other -1910 4294967291 57 1220 0 0 53 chr6 33611901 33612091 -155667463 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 6617 74 26 57 chr6 33612091 33612128 -155667426 - SVA Other Other -1847 58 21 23 0 0 0 chr6 33612266 33612289 -155667265 + AT_rich Low_complexity Low_complexity 1 23 0 1479 186 0 11 chr6 33612300 33612579 -155666975 + AluJb SINE Alu 9 284 -28 2200 208 80 15 chr6 33612661 33613189 -155666365 - MLT1F1 LTR MaLR 0 567 6 266 116 23 0 chr6 33614226 33614269 -155665285 + MADE1 DNA Mariner 35 78 -2 456 167 0 0 chr6 33614619 33614697 -155664857 - MLT1F LTR MaLR -2 540 463 623 332 80 8 chr6 33614809 33615183 -155664371 - LTR16B LTR ERVL -2 462 62 1588 325 46 35 chr6 33615191 33616410 -155663144 - ERVL LTR ERVL -504 5260 3688 757 296 42 0 chr6 33616408 33616715 -155662839 - ERVL LTR ERVL -2173 3481 3162 * 3137 314 62 24 chr6 33616804 33618835 -155660719 - ERVL LTR ERVL -1953 3043 873 26 30 0 0 chr6 33619710 33619743 -155659811 + AT_rich Low_complexity Low_complexity 1 33 0 983 234 109 13 chr6 33620556 33620898 -155658656 - LTR43 LTR ERV1 -53 470 177 2061 165 41 11 chr6 33622369 33622411 -155657143 - MLT2C1 LTR ERVL 0 397 358 393 22 0 0 chr6 33622411 33622457 -155657097 + (TG)n Simple_repeat Simple_repeat 2 47 0 2061 165 41 11 chr6 33622457 33622777 -155656777 - MLT2C1 LTR ERVL -39 358 24 231 212 106 59 chr6 33625750 33625835 -155653719 + L2 LINE L2 3183 3271 -1 552 68 0 0 chr6 33625923 33625996 -155653558 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 1892 90 0 50 chr6 33626102 33626380 -155653174 - AluSg SINE Alu -13 297 34 201 74 0 0 chr6 33627672 33627699 -155651855 + (TG)n Simple_repeat Simple_repeat 2 28 0 742 303 24 46 chr6 33627868 33628238 -155651316 + L1MC3 LINE L1 1445 1806 -4590 2310 76 3 13 chr6 33628260 33628576 -155650978 - AluSp SINE Alu 0 313 1 1103 220 63 16 chr6 33628591 33628955 -155650599 + L1MC3 LINE L1 2667 3047 -3168 1887 229 62 23 chr6 33628956 33629163 -155650391 + L1MC3 LINE L1 4799 4996 -1219 1898 120 4 0 chr6 33629163 33629438 -155650116 + AluSx SINE Alu 36 311 -1 1887 229 62 23 chr6 33629438 33629909 -155649645 + L1MC3 LINE L1 4996 5113 -1102 1501 180 58 0 chr6 33629909 33630021 -155649533 + AluJb SINE Alu 5 109 -203 252 0 0 0 chr6 33630021 33630049 -155649505 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1501 180 58 0 chr6 33630049 33630214 -155649340 + AluJb SINE Alu 109 298 -14 1887 229 62 23 chr6 33630214 33630589 -155648965 + L1MC3 LINE L1 5113 5472 -743 1926 132 0 23 chr6 33630594 33630897 -155648657 + AluSx SINE Alu 1 296 -16 513 143 9 76 chr6 33630920 33631025 -155648529 + AluJo/FLAM SINE Alu 35 132 -180 2189 101 3 0 chr6 33631027 33631325 -155648229 + AluSp SINE Alu 1 299 -14 189 74 0 0 chr6 33631325 33631352 -155648202 + (TA)n Simple_repeat Simple_repeat 2 28 0 857 265 71 19 chr6 33631352 33631620 -155647934 + L1ME1 LINE L1 5822 6103 -63 1998 95 67 0 chr6 33631620 33631904 -155647650 + AluSq SINE Alu 1 303 -10 30 66 0 13 chr6 33632200 33632238 -155647316 + AT_rich Low_complexity Low_complexity 1 38 -37 2196 83 7 0 chr6 33632238 33632526 -155647028 + AluSp SINE Alu 1 290 -23 30 66 0 13 chr6 33632526 33632563 -155646991 + AT_rich Low_complexity Low_complexity 38 75 0 2357 170 49 0 chr6 33632667 33633073 -155646481 - MSTB LTR MaLR 0 426 1 620 340 74 31 chr6 33633175 33634102 -155645452 + L1PBb LINE L1 273 1373 -5836 2432 65 0 10 chr6 33634127 33634435 -155645119 + AluSp SINE Alu 1 305 -8 1285 270 52 23 chr6 33634535 33635339 -155644215 + L1PBb LINE L1 1361 2036 -5173 2646 205 17 42 chr6 33635412 33635652 -155643902 + L1PBb LINE L1 2127 2371 -4837 2430 63 0 0 chr6 33635652 33635954 -155643600 + AluY SINE Alu 1 302 -9 2646 205 17 42 chr6 33635954 33636458 -155643096 + L1PBb LINE L1 2371 2853 -4355 2288 74 0 13 chr6 33636458 33636767 -155642787 + AluY SINE Alu 1 305 -6 1426 170 8 11 chr6 33636768 33637033 -155642521 + LTR2B LTR ERV1 227 490 0 533 63 0 0 chr6 33637035 33637114 -155642440 + AluSp/q SINE Alu 235 313 0 2249 107 0 0 chr6 33637131 33637441 -155642113 + AluSg SINE Alu 1 310 0 2065 116 10 3 chr6 33637487 33637798 -155641756 + AluSq SINE Alu 1 313 0 2101 122 3 0 chr6 33638017 33638320 -155641234 + AluSx SINE Alu 1 304 -8 2105 164 14 0 chr6 33638332 33638679 -155640875 - L1PB1 LINE L1 0 6151 5800 318 303 47 51 chr6 33638735 33638989 -155640565 + L1M4 LINE L1 4579 4831 -1315 2065 86 7 17 chr6 33639073 33639364 -155640190 + AluSp SINE Alu 1 288 -25 2233 56 0 3 chr6 33639364 33639649 -155639905 + AluY SINE Alu 1 284 -27 1990 60 45 0 chr6 33639668 33639968 -155639586 + AluY SINE Alu 1 312 0 1462 86 0 5 chr6 33640136 33640334 -155639220 - AluSg/x SINE Alu -32 280 84 1733 117 4 0 chr6 33640687 33640934 -155638620 - AluSp SINE Alu -2 311 64 1348 197 32 81 chr6 33640946 33641362 -155638192 + MSTB1 LTR MaLR 51 432 0 964 187 29 85 chr6 33641379 33641485 -155638069 + L1MC3 LINE L1 7488 7598 -187 1872 161 0 0 chr6 33641485 33641777 -155637777 + AluSx SINE Alu 1 292 -20 964 187 29 85 chr6 33641777 33641875 -155637679 + L1MC3 LINE L1 7598 7670 -115 2074 102 10 0 chr6 33641875 33642168 -155637386 + AluSx SINE Alu 1 296 -16 964 187 29 85 chr6 33642168 33642278 -155637276 + L1MC3 LINE L1 7670 7785 0 21 0 0 0 chr6 33642726 33642747 -155636807 + AT_rich Low_complexity Low_complexity 1 21 0 2059 200 82 14 chr6 33642749 33643250 -155636304 + L1MC3 LINE L1 7227 7761 -24 270 0 0 0 chr6 33643250 33643280 -155636274 + (ATTTG)n Simple_repeat Simple_repeat 2 31 0 2139 95 3 0 chr6 33643280 33643564 -155635990 - AluSp SINE Alu -28 285 1 1148 223 116 67 chr6 33644479 33644770 -155634784 - MLT1E3 LTR MaLR -234 390 76 1868 154 42 121 chr6 33644770 33645224 -155634330 + MER47B DNA MER2_type 1 418 0 1148 223 116 67 chr6 33645224 33645304 -155634250 - MLT1E3 LTR MaLR -548 76 1 1731 263 93 78 chr6 33645358 33646156 -155633398 - HERVL40 LTR ERVL -4306 1224 415 2181 111 0 3 chr6 33646270 33646577 -155632977 + AluSx SINE Alu 1 306 -6 2338 85 3 0 chr6 33646641 33646948 -155632606 + AluSp SINE Alu 5 312 -1 1157 53 20 0 chr6 33646993 33647145 -155632409 + L1PA4 LINE L1 6001 6155 0 1721 90 110 41 chr6 33647170 33647460 -155632094 + AluSg SINE Alu 1 310 0 1549 199 0 10 chr6 33647511 33647818 -155631736 - AluJo SINE Alu -8 304 1 1196 133 6 0 chr6 33647889 33648070 -155631484 - AluSx SINE Alu -130 182 1 2331 88 0 0 chr6 33648128 33648433 -155631121 - AluSq SINE Alu -6 307 3 25 31 0 0 chr6 33648658 33648690 -155630864 + GC_rich Low_complexity Low_complexity 1 32 0 2030 75 21 0 chr6 33649919 33650229 -155629325 - AluSp SINE Alu 0 316 1 214 151 57 0 chr6 33650326 33650379 -155629175 + GA-rich Low_complexity Low_complexity 5 60 0 2476 185 43 50 chr6 33650739 33650791 -155628763 - Tigger7 DNA MER2_type 0 2587 2536 1564 126 24 4 chr6 33650791 33651037 -155628517 - AluSx SINE Alu -11 301 51 2476 185 43 50 chr6 33651037 33651624 -155627930 - Tigger7 DNA MER2_type -51 2536 1946 1995 122 0 14 chr6 33651624 33651919 -155627635 - AluSx SINE Alu -21 291 1 2476 185 43 50 chr6 33651919 33652010 -155627544 - Tigger7 DNA MER2_type -641 1946 2 261 0 0 0 chr6 33652039 33652068 -155627486 + (TG)n Simple_repeat Simple_repeat 2 30 0 261 310 133 25 chr6 33652068 33652215 -155627339 - MIR3 SINE MIR -10 198 32 183 229 229 17 chr6 33652279 33652397 -155627157 + MIR SINE MIR 86 228 -34 2399 78 0 0 chr6 33653273 33653581 -155625973 - AluSg SINE Alu -2 308 1 207 0 0 0 chr6 33653711 33653734 -155625820 + (CA)n Simple_repeat Simple_repeat 2 24 0 266 266 0 0 chr6 33654141 33654205 -155625349 - L2 LINE L2 -1 3271 3208 2260 95 0 7 chr6 33654662 33654968 -155624586 - AluSc SINE Alu -5 304 1 2018 199 79 49 chr6 33654975 33655166 -155624388 - L1ME2 LINE L1 -269 5895 5711 1625 129 8 8 chr6 33655166 33655422 -155624132 + AluJb SINE Alu 5 260 -52 1053 83 0 0 chr6 33655428 33655573 -155623981 + (GAA)n Simple_repeat Simple_repeat 2 146 0 2018 199 79 49 chr6 33655573 33655983 -155623571 - L1ME2 LINE L1 -457 5707 5269 1588 251 52 12 chr6 33655998 33656496 -155623058 - L1MC4a LINE L1 -585 7223 6706 1650 151 0 4 chr6 33656497 33656756 -155622798 - Tigger2 DNA MER2_type 0 2718 2461 3612 133 111 32 chr6 33656822 33657008 -155622546 - Tigger2 DNA MER2_type -1975 743 573 1899 116 20 17 chr6 33657008 33657309 -155622245 + AluSx SINE Alu 3 304 -8 3612 133 111 32 chr6 33657309 33657809 -155621745 - Tigger2 DNA MER2_type -2145 573 3 352 276 66 44 chr6 33657809 33658145 -155621409 - L1MCc LINE L1 -4889 1534 1383 290 263 16 97 chr6 33659182 33659319 -155620235 - L1MC4a LINE L1 -381 5740 5664 1746 123 49 3 chr6 33659319 33659441 -155620113 + AluSx SINE Alu 1 116 -196 233 29 0 29 chr6 33659441 33659476 -155620078 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1746 123 49 3 chr6 33659476 33659637 -155619917 + AluSx SINE Alu 116 297 -15 290 263 16 97 chr6 33659637 33659705 -155619849 - L1MC4a LINE L1 -457 5664 5592 21 0 0 0 chr6 33659705 33659726 -155619828 + AT_rich Low_complexity Low_complexity 1 21 0 201 208 0 21 chr6 33659757 33659805 -155619749 + (TATAA)n Simple_repeat Simple_repeat 5 51 0 3410 142 11 9 chr6 33660253 33660796 -155618758 + LTR10A LTR ERV1 1 544 -65 390 269 141 39 chr6 33660807 33660963 -155618591 - L1ME3A LINE L1 -274 5896 5725 4475 116 8 0 chr6 33661314 33661944 -155617610 - MER41B LTR ERV1 0 635 1 2311 192 24 2 chr6 33661980 33662397 -155617157 + MSTB LTR MaLR 1 426 0 2032 172 9 0 chr6 33662953 33663302 -155616252 + MER47A DNA MER2_type 15 366 0 218 237 17 0 chr6 33663397 33663456 -155616098 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 6279 62 5 0 chr6 33664938 33665714 -155613840 - LTR17 LTR ERV1 0 780 1 5227 173 20 20 chr6 33666126 33666952 -155612602 - MER49 LTR ERV1 0 923 95 2013 152 0 0 chr6 33666952 33667254 -155612300 - AluSx SINE Alu -10 302 1 5227 173 20 20 chr6 33667254 33667341 -155612213 - MER49 LTR ERV1 -827 96 10 316 209 99 11 chr6 33667351 33667442 -155612112 - MARNA DNA Mariner -334 252 154 246 288 0 0 chr6 33669028 33669094 -155610460 + CT-rich Low_complexity Low_complexity 1 66 0 231 402 9 0 chr6 33670876 33670988 -155608566 - L3 LINE CR1 -477 1100 988 1104 235 35 53 chr6 33671105 33671424 -155608130 + MER93a LTR ERV1 90 402 0 363 306 35 21 chr6 33671579 33671723 -155607831 + MIR3 SINE MIR 31 176 -32 752 188 188 0 chr6 33672100 33672286 -155607268 + MIR SINE MIR 15 235 -27 253 279 0 0 chr6 33673820 33673888 -155605666 + MIR SINE MIR 85 152 -110 461 256 63 19 chr6 33673943 33674150 -155605404 + L2 LINE L2 528 743 -2571 3842 264 138 26 chr6 33674167 33675104 -155604450 + L2 LINE L2 971 1802 -1512 1721 176 90 9 chr6 33675104 33675450 -155604104 + MLT1A2 LTR MaLR 1 374 0 3842 264 138 26 chr6 33675450 33676137 -155603417 + L2 LINE L2 1802 2777 -537 1044 197 19 5 chr6 33676164 33676372 -155603182 - MER20 DNA MER1_type -8 211 1 2834 130 2 14 chr6 33676385 33676809 -155602745 - L1P3 LINE L1 -6042 419 1 1333 135 4 58 chr6 33676806 33677066 -155602488 - L1MA5 LINE L1 -241 6059 5814 * 3389 254 109 21 chr6 33677058 33678324 -155601230 - L1M4c LINE L1 -3940 2444 1040 2845 19 0 0 chr6 33678324 33678635 -155600919 - AluYa5 SINE Alu 0 311 1 3389 254 109 21 chr6 33678635 33678783 -155600771 - L1M4c LINE L1 -5344 1040 906 4091 240 66 12 chr6 33678797 33680144 -155599410 + L1M4 LINE L1 2220 3639 -2507 2341 103 3 0 chr6 33680745 33681045 -155598509 + AluSp SINE Alu 1 301 -12 1423 230 18 0 chr6 33682036 33682379 -155597175 + L1MB5 LINE L1 5817 6165 -9 2088 167 27 3 chr6 33683507 33683872 -155595682 - MLT1B LTR MaLR -16 374 1 499 270 0 0 chr6 33684057 33684168 -155595386 + MER81 DNA DNA 3 113 -1 2193 133 117 8 chr6 33686269 33686637 -155592917 - MSTA LTR MaLR 0 428 21 228 270 34 11 chr6 33787551 33787640 -155491914 + MIR SINE MIR 108 198 -64 395 345 53 8 chr6 33787982 33788228 -155491326 + MIR SINE MIR 2 258 -4 251 281 22 34 chr6 33789665 33789754 -155489800 - MIR SINE MIR -76 132 45 181 394 22 15 chr6 33790591 33790728 -155488826 + L2 LINE L2 1856 1993 -1321 202 358 80 18 chr6 33791102 33791328 -155488226 + L2 LINE L2 3032 3271 -1 277 316 32 39 chr6 33791689 33791844 -155487710 + L3 LINE CR1 1422 1575 -2 708 128 0 0 chr6 33792047 33792156 -155487398 + L1PA13 LINE L1 6048 6156 -7 678 191 141 48 chr6 33792466 33792677 -155486877 + MIR SINE MIR 34 262 0 685 212 68 56 chr6 33794353 33794603 -155484951 - MIR SINE MIR -4 258 6 456 307 92 62 chr6 33795229 33795258 -155484296 - L1MC/D LINE L1 -513 5649 5622 2177 179 42 0 chr6 33795258 33795666 -155483888 - MSTB1 LTR MaLR -4 428 4 456 307 92 62 chr6 33795666 33796675 -155482879 - L1MC/D LINE L1 -540 5622 4723 710 191 46 7 chr6 33796791 33796943 -155482611 + MER96B DNA MER1_type? 2 159 -258 273 81 0 0 chr6 33797159 33797196 -155482358 + MSTB LTR MaLR 1 37 -389 395 345 53 8 chr6 33799702 33799948 -155479606 - MIR SINE MIR -4 258 2 228 270 34 11 chr6 33800290 33800379 -155479175 - MIR SINE MIR -64 198 108 4871 38 2 7 chr6 33801991 33802576 -155476978 - L1PA5 LINE L1 -1 6153 5572 1177 15 0 0 chr6 33802576 33802707 -155476847 + L1PA5 LINE L1 5439 5569 -585 1858 164 6 6 chr6 33808529 33808840 -155470714 - AluJb SINE Alu -1 311 1 1669 144 7 50 chr6 33809574 33809872 -155469682 + AluSq SINE Alu 1 285 -28 192 40 0 0 chr6 33809875 33809900 -155469654 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 456 19 0 0 chr6 33809921 33809974 -155469580 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 3488 106 68 2 chr6 33812829 33813360 -155466194 + L1PB1 LINE L1 5572 6137 -14 215 356 182 18 chr6 33813473 33813962 -155465592 + L2 LINE L2 1848 2416 -898 228 33 0 0 chr6 33813980 33814010 -155465544 + L1MA8 LINE L1 5999 6028 -263 1267 151 72 0 chr6 33814037 33814288 -155465266 + L1MA8 LINE L1 6017 6285 -6 265 364 107 30 chr6 33814498 33815073 -155464481 + L2 LINE L2 2631 3250 -22 600 216 20 7 chr6 33815259 33815407 -155464147 - MER96B DNA MER1_type? -11 406 257 394 268 180 31 chr6 33816938 33817132 -155462422 + MIR SINE MIR 39 261 -1 345 333 13 7 chr6 33817667 33817817 -155461737 + (CCCA)n Simple_repeat Simple_repeat 1 151 0 376 282 5 48 chr6 33817892 33818114 -155461440 + (TCCA)n Simple_repeat Simple_repeat 1 212 0 2422 123 16 0 chr6 33819731 33820096 -155459458 - L1PB1 LINE L1 -5 6862 6492 271 89 0 63 chr6 33820096 33820175 -155459379 + (TA)n Simple_repeat Simple_repeat 2 75 0 3963 169 26 1 chr6 33820179 33821499 -155458055 - L1PB1 LINE L1 -360 6507 5151 4282 155 45 30 chr6 33821499 33822460 -155457094 + MER11C LTR ERVK 1 1067 -4 10716 179 132 8 chr6 33822466 33826742 -155452812 - L1PB1 LINE L1 -1707 5155 304 2379 77 0 3 chr6 33826742 33827040 -155452514 - AluY SINE Alu -13 298 2 10716 179 132 8 chr6 33827040 33827281 -155452273 - L1PB1 LINE L1 -6558 304 94 753 205 0 0 chr6 33827548 33827675 -155451879 - FLAM_C SINE Alu -6 127 1 551 353 124 30 chr6 33827685 33828626 -155450928 + L2 LINE L2 1812 2841 -473 344 185 339 0 chr6 33829822 33829952 -155449602 + MIR SINE MIR 79 252 -10 200 288 0 0 chr6 33830040 33830099 -155449455 + T-rich Low_complexity Low_complexity 2 60 0 641 246 138 13 chr6 33831739 33831963 -155447591 - MIR SINE MIR 0 262 11 399 313 199 30 chr6 33831965 33832368 -155447186 - L1MEd LINE L1 -1921 4208 3738 367 303 141 30 chr6 33832377 33832938 -155446616 - L1MEd LINE L1 -2436 3693 3071 523 289 126 58 chr6 33833023 33833404 -155446150 - L1MEd LINE L1 -4884 1235 829 294 242 0 15 chr6 33833588 33833654 -155445900 + L2 LINE L2 3238 3302 -11 519 278 155 28 chr6 33833724 33834008 -155445546 + MLT1I LTR MaLR 85 404 -5 2259 85 3 26 chr6 33835590 33835896 -155443658 - AluSx SINE Alu -13 299 1 845 162 51 38 chr6 33835901 33835931 -155443623 - Cheshire DNA MER1_type -128 2292 2264 2286 105 3 3 chr6 33835931 33836236 -155443318 + AluSq SINE Alu 1 305 -8 1752 168 16 36 chr6 33836246 33836555 -155442999 + AluJb SINE Alu 1 303 -9 845 162 51 38 chr6 33836555 33836748 -155442806 - Cheshire DNA MER1_type -164 2256 2055 1550 210 64 11 chr6 33836754 33837111 -155442443 - Cheshire DNA MER1_type -2044 376 1 281 228 51 38 chr6 33837120 33837199 -155442355 + MIR SINE MIR 162 241 -21 267 309 0 12 chr6 33837347 33837428 -155442126 - L2 LINE L2 0 3272 3193 2196 99 0 26 chr6 33837489 33837793 -155441761 - AluSg SINE Alu -14 296 1 2119 128 13 7 chr6 33837832 33838137 -155441417 - AluSx SINE Alu -5 307 1 1028 129 6 79 chr6 33838276 33838454 -155441100 - AluJb SINE Alu -147 165 1 2296 97 3 0 chr6 33838536 33838825 -155440729 - AluSg SINE Alu -20 290 1 1753 130 54 0 chr6 33839652 33839913 -155439641 + AluSx SINE Alu 20 294 -18 307 277 117 0 chr6 33840547 33840641 -155438913 + MIR SINE MIR 110 214 -48 198 0 0 0 chr6 33844891 33844913 -155434641 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 1951 129 17 10 chr6 33846136 33846430 -155433124 + AluSx SINE Alu 1 296 -16 496 213 28 6 chr6 33846923 33847156 -155432398 + MLT1C LTR MaLR 54 322 -145 1343 143 160 4 chr6 33847297 33847534 -155432020 + AluJb SINE Alu 19 292 -20 1622 143 155 0 chr6 33847537 33847795 -155431759 + AluSx SINE Alu 1 298 -14 583 82 0 0 chr6 33847864 33847937 -155431617 - AluSq/x SINE Alu -198 114 42 827 225 106 9 chr6 33850409 33850627 -155428927 + MIR SINE MIR 3 241 -21 2686 42 0 3 chr6 33850780 33851086 -155428468 - AluY SINE Alu -6 305 1 578 204 30 30 chr6 33851112 33851244 -155428310 - FLAM_A SINE Alu -1 132 1 1564 143 121 7 chr6 33855322 33855594 -155423960 + AluJo SINE Alu 1 303 -9 2266 88 18 0 chr6 33855595 33855880 -155423674 + AluSg SINE Alu 1 290 -20 1661 201 10 17 chr6 33856083 33856371 -155423183 + AluJo SINE Alu 1 286 -26 2348 104 3 13 chr6 33856381 33856689 -155422865 + AluSq SINE Alu 3 307 -6 420 248 128 8 chr6 33858024 33858141 -155421413 + L2 LINE L2 3137 3267 -5 180 0 0 0 chr6 33858320 33858340 -155421214 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 279 0 0 0 chr6 33858339 33858370 -155421184 + (TG)n Simple_repeat Simple_repeat 2 32 0 1213 155 5 10 chr6 33858459 33858652 -155420902 - AluJb SINE Alu 0 312 121 6429 102 29 27 chr6 33858675 33859689 -155419865 - L1MA1 LINE L1 -104 6198 5188 2446 91 3 0 chr6 33859689 33859996 -155419558 - AluSp SINE Alu -5 308 1 6429 102 29 27 chr6 33859996 33860275 -155419279 - L1MA1 LINE L1 -1114 5188 4903 2124 126 3 0 chr6 33860275 33860569 -155418985 - AluSx SINE Alu -17 295 1 6429 102 29 27 chr6 33860569 33860624 -155418930 - L1MA1 LINE L1 -1399 4903 4850 257 184 107 97 chr6 33860625 33860728 -155418826 - AluJb SINE Alu -138 164 61 2110 128 7 3 chr6 33860740 33861037 -155418517 - AluSx SINE Alu -14 298 1 815 229 27 11 chr6 33861388 33861571 -155417983 + AluJo SINE Alu 120 305 -7 575 230 99 70 chr6 33861585 33861968 -155417586 - L1ME2 LINE L1 -277 5887 5470 1263 160 5 0 chr6 33862005 33862218 -155417336 - MER46A DNA MER2_type -22 214 1 234 253 27 0 chr6 33862218 33862293 -155417261 - L1ME2 LINE L1 -718 5444 5368 3346 95 24 32 chr6 33862294 33862787 -155416767 + LTR22B LTR ERVK 1 489 -3 306 308 69 25 chr6 33862836 33862890 -155416664 - L1ME2 LINE L1 -786 5360 5310 1694 157 78 0 chr6 33862890 33863171 -155416383 + AluSx SINE Alu 1 303 -9 306 308 69 25 chr6 33863171 33863275 -155416279 - L1ME2 LINE L1 -836 5310 5195 283 133 147 40 chr6 33863276 33863351 -155416203 - FLAM SINE Alu 0 133 51 2213 114 7 0 chr6 33863351 33863649 -155415905 - AluSq SINE Alu -13 300 1 1787 163 10 26 chr6 33863722 33864029 -155415525 - AluJb SINE Alu -10 302 1 2281 107 0 7 chr6 33864056 33864355 -155415199 + AluSc SINE Alu 1 297 -12 1957 165 0 16 chr6 33864420 33864736 -155414818 + AluJb SINE Alu 1 311 -1 389 228 57 0 chr6 33864761 33864884 -155414670 - L1ME2 LINE L1 -1129 5017 4888 1791 106 0 4 chr6 33864884 33865119 -155414435 - AluSg/x SINE Alu -1 309 76 332 218 40 10 chr6 33865134 33865235 -155414319 - L1ME2 LINE L1 -1528 4618 4515 1297 129 31 0 chr6 33865261 33865455 -155414099 - AluJo SINE Alu 0 312 113 23 0 0 0 chr6 33865459 33865482 -155414072 + AT_rich Low_complexity Low_complexity 1 23 0 230 239 22 101 chr6 33865672 33865810 -155413744 - L1ME2 LINE L1 -1959 4187 4061 950 148 0 138 chr6 33865818 33865936 -155413618 + AluJo SINE Alu 6 82 -230 2153 76 13 45 chr6 33865936 33866250 -155413304 - AluY SINE Alu -7 304 1 950 148 0 138 chr6 33866250 33866348 -155413206 + AluJo SINE Alu 82 192 -120 691 160 103 38 chr6 33866647 33866790 -155412764 - Charlie5 DNA MER1_type -22 2563 2400 1875 138 24 17 chr6 33866790 33867086 -155412468 + AluJb SINE Alu 7 304 -8 691 160 103 38 chr6 33867086 33867155 -155412399 - Charlie5 DNA MER1_type -185 2400 2337 1073 125 12 12 chr6 33867451 33867640 -155411914 - AluSg/x SINE Alu 0 310 122 259 245 21 98 chr6 33867794 33867937 -155411617 - L1MC5 LINE L1 -76 7885 7754 1016 164 7 0 chr6 33867993 33868145 -155411409 - FRAM SINE Alu -22 154 2 1050 184 132 67 chr6 33868155 33868243 -155411311 - L1MC5 LINE L1 -264 7697 7616 2410 95 0 7 chr6 33868243 33868547 -155411007 - AluSq SINE Alu -11 302 1 1050 184 132 67 chr6 33868547 33868935 -155410619 - L1MC5 LINE L1 -345 7616 7190 687 252 185 42 chr6 33868940 33869145 -155410409 - L1MEd LINE L1 -5025 1094 920 2511 89 0 0 chr6 33869145 33869448 -155410106 - AluSx SINE Alu -9 303 1 687 252 185 42 chr6 33869448 33869675 -155409879 - L1MEd LINE L1 -5199 920 600 2349 113 0 0 chr6 33870383 33870693 -155408861 - AluSg SINE Alu 0 310 1 1928 133 14 0 chr6 33874047 33874362 -155405192 + AluSx SINE Alu 1 312 0 1617 146 26 52 chr6 33874392 33874700 -155404854 + AluJo SINE Alu 1 300 -12 312 294 101 0 chr6 33874855 33874964 -155404590 - L2 LINE L2 -2 3311 3192 215 350 146 0 chr6 33874954 33875077 -155404477 - MIR SINE MIR -59 203 63 * 372 22 0 0 chr6 33875796 33875841 -155403713 + (TG)n Simple_repeat Simple_repeat 1 45 0 2081 125 0 31 chr6 33876030 33876349 -155403205 - AluSx SINE Alu 0 312 4 1986 151 10 0 chr6 33876354 33876646 -155402908 - AluJb SINE Alu -17 295 1 2182 103 14 7 chr6 33876680 33876971 -155402583 + AluSp SINE Alu 1 293 -20 207 0 0 0 chr6 33876972 33876995 -155402559 + (TA)n Simple_repeat Simple_repeat 1 23 0 1087 104 0 0 chr6 33877000 33877135 -155402419 + AluSq/x SINE Alu 1 135 -178 2215 131 3 3 chr6 33877135 33877447 -155402107 + AluSq SINE Alu 1 312 -1 331 246 14 0 chr6 33877449 33877518 -155402036 - L1MCa LINE L1 -4362 2064 1995 535 76 0 0 chr6 33877535 33877601 -155401953 + Alu SINE Alu 1 66 -244 2075 133 16 7 chr6 33877605 33877914 -155401640 + AluJb SINE Alu 1 312 0 2117 117 3 0 chr6 33878647 33879054 -155400500 - AluSp SINE Alu 0 408 1 673 132 16 0 chr6 33879064 33879185 -155400369 + CT-rich Low_complexity Low_complexity 2 124 0 918 170 24 24 chr6 33879193 33879358 -155400196 - AluJb SINE Alu -10 302 138 1001 195 53 11 chr6 33879406 33879799 -155399755 + Charlie4a DNA MER1_type 61 507 -1 2419 100 0 3 chr6 33879868 33880179 -155399375 - AluSx SINE Alu -2 310 1 676 223 42 12 chr6 33880435 33880532 -155399022 + MER97b DNA MER1_type? 6 112 -941 2351 102 0 0 chr6 33880532 33880835 -155398719 - AluSx SINE Alu -9 303 1 676 223 42 12 chr6 33880835 33880903 -155398651 + MER97b DNA MER1_type? 112 176 -877 465 34 0 0 chr6 33880981 33881040 -155398514 + (CA)n Simple_repeat Simple_repeat 2 60 0 546 241 0 50 chr6 33881632 33881773 -155397781 - MLT1E3 LTR MaLR -436 188 55 1705 161 12 62 chr6 33882367 33882493 -155397061 + AluJb SINE Alu 1 132 -180 2350 80 7 0 chr6 33882493 33882782 -155396772 - AluSg SINE Alu -19 291 1 1705 161 12 62 chr6 33882782 33882978 -155396576 + AluJb SINE Alu 132 307 -5 2276 117 0 0 chr6 33883106 33883404 -155396150 - AluSq SINE Alu -15 298 1 702 233 71 57 chr6 33884071 33884095 -155395459 - MIR SINE MIR -30 232 210 2590 105 57 38 chr6 33884095 33884165 -155395389 - MSTA LTR MaLR 0 428 361 2378 100 0 0 chr6 33884165 33884465 -155395089 + AluSx SINE Alu 2 301 -11 1852 148 28 24 chr6 33884472 33884763 -155394791 + AluJb SINE Alu 2 293 -19 2590 105 57 38 chr6 33884763 33885104 -155394450 - MSTA LTR MaLR -72 356 1 702 233 71 57 chr6 33885104 33885289 -155394265 - MIR SINE MIR -52 210 20 1794 145 76 10 chr6 33885295 33885656 -155393898 - AluSg SINE Alu 0 380 1 2185 110 7 10 chr6 33885666 33885974 -155393580 - AluSx SINE Alu -5 307 1 1800 331 109 33 chr6 33885991 33887288 -155392266 + L2 LINE L2 71 1465 -1849 1672 160 13 69 chr6 33887354 33887672 -155391882 + AluJb SINE Alu 1 300 -12 346 135 0 27 chr6 33887672 33887746 -155391808 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 210 37 0 0 chr6 33887759 33887786 -155391768 + (TA)n Simple_repeat Simple_repeat 1 27 0 307 251 70 55 chr6 33887786 33887857 -155391697 + L1MC4 LINE L1 7695 7763 -279 2289 118 0 0 chr6 33887857 33888163 -155391391 - AluSc SINE Alu -3 306 1 307 251 70 55 chr6 33888163 33888290 -155391264 + L1MC4 LINE L1 7763 7896 -146 2209 104 3 13 chr6 33888338 33888645 -155390909 + AluSp SINE Alu 1 304 -9 1812 179 14 0 chr6 33888670 33888961 -155390593 + AluJo SINE Alu 6 300 -12 369 245 48 88 chr6 33888985 33889132 -155390422 + L1MC4 LINE L1 7902 8042 0 926 268 98 54 chr6 33889141 33889640 -155389914 + L2 LINE L2 1810 2336 -978 2368 95 0 3 chr6 33889640 33889944 -155389610 - AluSq SINE Alu -10 303 1 926 268 98 54 chr6 33889944 33889982 -155389572 + L2 LINE L2 2336 2371 -943 2347 222 81 31 chr6 33889989 33890562 -155388992 + Zaphod DNA AcHobo 1 613 -3418 1097 66 20 7 chr6 33890562 33890713 -155388841 + L1PB1 LINE L1 5997 6149 -2 2347 222 81 31 chr6 33890713 33890807 -155388747 + Zaphod DNA AcHobo 613 701 -3330 908 202 93 0 chr6 33890807 33891000 -155388554 + MER2 DNA MER2_type 1 211 -134 422 48 0 32 chr6 33891013 33891075 -155388479 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 2158 107 7 3 chr6 33891075 33891364 -155388190 - AluY SINE Alu -19 292 3 283 261 15 0 chr6 33891385 33891450 -155388104 + MER2 DNA MER2_type 280 345 0 229 133 20 166 chr6 33891450 33891474 -155388080 + Zaphod DNA AcHobo 700 726 -3305 1937 183 25 30 chr6 33891474 33891685 -155387869 - MLT1A1 LTR MaLR 0 365 155 2057 148 0 0 chr6 33891685 33891975 -155387579 - AluSx SINE Alu -22 290 1 1937 183 25 30 chr6 33891975 33892130 -155387424 - MLT1A1 LTR MaLR -210 155 1 229 133 20 166 chr6 33892130 33892162 -155387392 + Zaphod DNA AcHobo 726 761 -3270 1844 174 3 0 chr6 33892162 33892450 -155387104 - AluJb SINE Alu -23 289 1 229 133 20 166 chr6 33892450 33892543 -155387011 + Zaphod DNA AcHobo 761 828 -3203 1262 206 0 0 chr6 33892544 33892762 -155386792 + AluJo SINE Alu 3 220 -92 341 74 0 19 chr6 33892762 33892816 -155386738 + AluSq/x SINE Alu 86 138 -164 288 186 0 0 chr6 33892834 33892893 -155386661 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 1058 190 17 0 chr6 33892893 33893072 -155386482 + AluJb SINE Alu 125 306 -6 277 273 100 0 chr6 33893145 33893255 -155386299 + MER102a DNA MER1_type 197 317 -13 214 162 0 0 chr6 33893395 33893432 -155386122 + (CAA)n Simple_repeat Simple_repeat 2 38 0 467 244 52 15 chr6 33893440 33893575 -155385979 - MIR SINE MIR -20 242 103 2328 95 14 0 chr6 33893584 33893880 -155385674 + AluSg SINE Alu 1 300 -10 24 0 0 0 chr6 33894117 33894141 -155385413 + AT_rich Low_complexity Low_complexity 1 24 0 1053 272 66 21 chr6 33894316 33894975 -155384579 - L1MC1 LINE L1 -345 5817 5181 2446 83 0 3 chr6 33894975 33895277 -155384277 - AluY SINE Alu -10 301 1 1053 272 66 21 chr6 33895277 33895357 -155384197 - L1MC1 LINE L1 -981 5181 5106 403 201 98 55 chr6 33895354 33895518 -155384036 - L1MA8 LINE L1 -1 6290 6120 * 1916 167 7 3 chr6 33895518 33895824 -155383730 - AluJo SINE Alu -5 307 1 872 144 23 0 chr6 33895824 33895956 -155383598 - AluJo SINE Alu -177 135 1 938 93 27 87 chr6 33895956 33896139 -155383415 - L1MA8 LINE L1 -167 6124 5953 1157 152 0 16 chr6 33896148 33896332 -155383222 - FRAM SINE Alu -2 174 1 4844 147 58 82 chr6 33896335 33896972 -155382582 - L1MA8 LINE L1 -351 5940 5290 1853 182 0 7 chr6 33896972 33897268 -155382286 + AluJo SINE Alu 1 294 -18 4844 147 58 82 chr6 33897268 33897464 -155382090 - L1MA8 LINE L1 -1001 5290 5091 437 125 0 0 chr6 33897464 33897528 -155382026 + AluSc SINE Alu 226 289 -20 4844 147 58 82 chr6 33897528 33897567 -155381987 - L1MA8 LINE L1 -1200 5091 5053 1574 116 0 0 chr6 33897567 33897766 -155381788 - AluSc SINE Alu -110 199 1 4844 147 58 82 chr6 33897766 33897808 -155381746 - L1MA8 LINE L1 -1238 5053 5012 1796 159 55 0 chr6 33897808 33898098 -155381456 - AluSx SINE Alu -6 306 1 4844 147 58 82 chr6 33898098 33899307 -155380247 - L1MA8 LINE L1 -1279 5012 3864 447 358 67 0 chr6 33899310 33899503 -155380051 - L1MC1 LINE L1 -1031 5115 4910 2104 122 153 42 chr6 33899563 33899771 -155379783 - MSTA LTR MaLR 0 428 245 2084 143 3 7 chr6 33899771 33900071 -155379483 - AluJb SINE Alu -13 299 1 2104 122 153 42 chr6 33900071 33900247 -155379307 - MSTA LTR MaLR -183 245 1 595 316 94 25 chr6 33900266 33900438 -155379116 - L1MC1 LINE L1 -1329 4817 4658 2341 91 0 7 chr6 33900438 33900734 -155378820 + AluSg SINE Alu 1 294 -16 595 316 94 25 chr6 33900734 33900992 -155378562 - L1MC1 LINE L1 -1488 4658 4419 2374 95 0 0 chr6 33900992 33901298 -155378256 - AluY SINE Alu -5 306 1 595 316 94 25 chr6 33901298 33901556 -155377998 - L1MC1 LINE L1 -1727 4419 4080 1425 157 4 44 chr6 33901652 33901774 -155377780 - AluJo SINE Alu -74 238 113 3251 100 4 39 chr6 33901774 33901864 -155377690 + L1PA11 LINE L1 5697 5789 -385 2187 114 27 7 chr6 33901864 33902163 -155377391 + AluSg SINE Alu 1 305 -5 2284 117 0 0 chr6 33902164 33902463 -155377091 + AluSg SINE Alu 2 300 -10 3251 100 4 39 chr6 33902463 33902859 -155376695 + L1PA11 LINE L1 5788 6168 -6 1425 157 4 44 chr6 33902859 33902984 -155376570 - AluJo SINE Alu -199 113 1 706 263 110 76 chr6 33903289 33904053 -155375501 - L2 LINE L2 0 3272 2485 235 305 105 11 chr6 33904086 33904181 -155375373 + L2 LINE L2 3209 3312 -1 1949 163 3 3 chr6 33904610 33904917 -155374637 - AluSx SINE Alu -5 307 1 22 35 0 0 chr6 33905052 33905081 -155374473 + AT_rich Low_complexity Low_complexity 1 29 0 218 169 42 28 chr6 33906210 33906281 -155373273 + GA-rich Low_complexity Low_complexity 1 72 0 514 241 137 29 chr6 33906798 33906821 -155372733 - MIR SINE MIR -10 252 233 998 169 33 0 chr6 33906821 33907004 -155372550 - MER5A DNA MER1_type 0 189 1 514 241 137 29 chr6 33907004 33907213 -155372341 - MIR SINE MIR -29 233 4 294 308 16 44 chr6 33909463 33909645 -155369909 + GA-rich Low_complexity Low_complexity 4 180 0 590 262 47 29 chr6 33910695 33910867 -155368687 - MIR SINE MIR -4 258 84 472 129 129 0 chr6 33910877 33910962 -155368592 + MER5A DNA MER1_type 8 103 -86 1740 177 0 44 chr6 33911121 33911437 -155368117 - AluJb SINE Alu -10 302 1 397 292 110 26 chr6 33912429 33912583 -155366971 + MER5A DNA MER1_type 7 173 -16 316 183 32 75 chr6 33912630 33912723 -155366831 + MIR SINE MIR 131 219 -43 262 242 10 30 chr6 33913045 33913144 -155366410 + C-rich Low_complexity Low_complexity 5 101 0 233 262 16 0 chr6 33914398 33914459 -155365095 + C-rich Low_complexity Low_complexity 5 66 0 243 0 0 0 chr6 33915757 33915784 -155363770 + (TC)n Simple_repeat Simple_repeat 2 28 0 197 62 0 31 chr6 33921414 33921446 -155358108 + (CGG)n Simple_repeat Simple_repeat 3 33 0 21 0 0 0 chr6 33921663 33921684 -155357870 + GC_rich Low_complexity Low_complexity 1 21 0 708 78 0 0 chr6 33922065 33922155 -155357399 - HY4 scRNA scRNA -3 90 1 1387 98 0 0 chr6 33922821 33923004 -155356550 - AluSg/x SINE Alu -9 301 119 211 290 72 0 chr6 33923131 33923200 -155356354 + MER91C DNA MER1_type 43 116 -24 399 304 82 32 chr6 33924463 33924621 -155354933 - MIR3 SINE MIR -27 181 16 273 326 132 16 chr6 33924639 33924829 -155354725 + MIR SINE MIR 20 231 -31 24 0 0 0 chr6 33924829 33924853 -155354701 + AT_rich Low_complexity Low_complexity 1 24 0 210 94 19 38 chr6 33929210 33929263 -155350291 + (CGGGGG)n Simple_repeat Simple_repeat 4 55 0 218 319 18 35 chr6 33930467 33930580 -155348974 + L3b LINE CR1 1323 1433 -150 263 246 7 0 chr6 33931806 33931948 -155347606 + GA-rich Low_complexity Low_complexity 2 144 0 402 238 238 0 chr6 33932968 33933119 -155346435 + MIR SINE MIR 76 262 0 313 333 15 7 chr6 33933631 33933766 -155345788 + (CCCA)n Simple_repeat Simple_repeat 1 136 0 422 282 11 22 chr6 33933835 33934016 -155345538 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 306 296 22 9 chr6 33934036 33934271 -155345283 + (TCCA)n Simple_repeat Simple_repeat 1 238 0 276 270 93 59 chr6 33934594 33934799 -155344755 + MIR SINE MIR 17 211 -51 261 0 0 0 chr6 33935632 33935661 -155343893 + (GGGAA)n Simple_repeat Simple_repeat 1 29 0 232 347 0 28 chr6 33935775 33935951 -155343603 + C-rich Low_complexity Low_complexity 4 174 0 2112 119 3 0 chr6 33939031 33939326 -155340228 - AluSx SINE Alu -16 296 1 2108 121 3 0 chr6 33939466 33939763 -155339791 - AluSq SINE Alu -15 298 1 2242 105 0 34 chr6 33939970 33940293 -155339261 + AluSx SINE Alu 1 312 0 410 271 234 16 chr6 33946530 33946718 -155332836 - MIR SINE MIR -21 241 13 441 229 137 11 chr6 33947303 33947478 -155332076 - MIR3 SINE MIR -9 199 3 204 179 0 0 chr6 33953788 33953827 -155325727 + (TG)n Simple_repeat Simple_repeat 2 40 0 2094 97 3 3 chr6 33961213 33961501 -155318053 - AluSc SINE Alu -14 295 8 1183 142 0 44 chr6 33961828 33961854 -155317700 + AluJo SINE Alu 86 112 -200 1708 162 47 3 chr6 33961854 33962151 -155317403 - AluJb SINE Alu -2 310 1 1183 142 0 44 chr6 33962151 33962328 -155317226 + AluJo SINE Alu 112 280 -32 204 40 0 0 chr6 33962328 33962353 -155317201 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1704 164 0 7 chr6 33962865 33963152 -155316402 - AluJb SINE Alu -2 310 26 2360 67 0 0 chr6 33963159 33963456 -155316098 - AluY SINE Alu -14 297 1 214 133 111 0 chr6 33964144 33964189 -155315365 + MIR SINE MIR 102 151 -111 942 179 196 0 chr6 33965046 33965275 -155314279 + ORSL DNA AcHobo 1 274 -1 258 227 180 8 chr6 33965309 33965414 -155314140 - L1MC5 LINE L1 -262 7699 7567 243 0 0 0 chr6 33965414 33965441 -155314113 + (TG)n Simple_repeat Simple_repeat 2 28 0 258 227 180 8 chr6 33965441 33965463 -155314091 - L1MC5 LINE L1 -394 7567 7550 1877 150 7 10 chr6 33965567 33965874 -155313680 - AluJb SINE Alu -6 306 1 250 244 59 17 chr6 33965876 33965995 -155313559 + Charlie1 DNA MER1_type 2591 2714 -47 436 239 39 71 chr6 33966056 33966211 -155313343 - MER5B DNA MER1_type -28 150 1 2164 131 0 3 chr6 33966244 33966557 -155312997 + AluSx SINE Alu 1 312 0 2371 84 10 0 chr6 33966577 33966887 -155312667 + AluSp SINE Alu 1 313 0 353 284 81 7 chr6 33966992 33967140 -155312414 - MLT1L LTR MaLR -33 582 424 1053 212 97 26 chr6 33967815 33968084 -155311470 - MLT1J LTR MaLR -7 504 217 1944 93 4 7 chr6 33968086 33968355 -155311199 - AluSx SINE Alu 0 312 45 186 71 0 0 chr6 33968632 33968660 -155310894 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 1052 122 0 0 chr6 33968660 33968808 -155310746 - AluSx SINE Alu -26 284 137 4701 69 26 9 chr6 33968808 33969912 -155309642 + MER11A LTR ERVK 3 1266 0 1024 115 0 14 chr6 33969912 33970060 -155309494 - AluSx SINE Alu -167 146 1 1006 161 36 21 chr6 33970212 33970404 -155309150 + MER3 DNA MER1_type 15 209 0 2083 110 7 0 chr6 33970693 33971022 -155308532 + AluSx SINE Alu 1 331 0 573 162 103 22 chr6 33971028 33971185 -155308369 - L1ME1 LINE L1 -5 6161 5997 180 220 20 0 chr6 33971474 33971524 -155308030 + MIR SINE MIR 185 235 -27 572 212 66 33 chr6 33972520 33972671 -155306883 - MER3 DNA MER1_type -53 156 1 1402 134 46 8 chr6 33972863 33972913 -155306641 - L1MA8 LINE L1 -4 6287 6240 252 0 0 0 chr6 33972913 33972941 -155306613 + (TA)n Simple_repeat Simple_repeat 1 28 0 1402 134 46 8 chr6 33972941 33973151 -155306403 - L1MA8 LINE L1 -51 6240 6017 1282 180 99 0 chr6 33974170 33974442 -155305112 - AluJb SINE Alu -13 299 1 25 31 0 0 chr6 33974690 33974722 -155304832 + AT_rich Low_complexity Low_complexity 1 32 0 559 136 0 0 chr6 33974804 33974885 -155304669 - AluS SINE Alu -11 300 220 1943 171 25 53 chr6 33974886 33975279 -155304275 + MLT2B3 LTR ERVL 167 548 -6 1466 220 26 0 chr6 33975313 33975618 -155303936 + MER68 LTR ERV1 250 562 0 2267 85 0 26 chr6 33975836 33976142 -155303412 - AluSq SINE Alu -15 298 1 1485 175 95 0 chr6 33976448 33976722 -155302832 + AluSx SINE Alu 1 300 -12 727 221 6 31 chr6 33977210 33977373 -155302181 + AluJb SINE Alu 123 281 -31 204 40 0 0 chr6 33977374 33977399 -155302155 + (TC)n Simple_repeat Simple_repeat 2 26 0 342 0 0 0 chr6 33977399 33977437 -155302117 + (CA)n Simple_repeat Simple_repeat 1 38 0 2319 92 0 0 chr6 33977506 33977811 -155301743 - AluSq SINE Alu -8 305 1 35 24 0 0 chr6 33977871 33977913 -155301641 + AT_rich Low_complexity Low_complexity 1 42 0 313 250 227 0 chr6 33978671 33978799 -155300755 - MIR SINE MIR 0 262 106 276 185 0 0 chr6 33978947 33979001 -155300553 + CT-rich Low_complexity Low_complexity 2 55 0 208 0 37 0 chr6 33979002 33979029 -155300525 + (TC)n Simple_repeat Simple_repeat 1 28 0 1346 211 22 4 chr6 33979029 33979177 -155300377 - AluJo SINE Alu -32 280 123 279 0 0 0 chr6 33979177 33979208 -155300346 + (TA)n Simple_repeat Simple_repeat 1 31 0 1346 211 22 4 chr6 33979208 33979334 -155300220 - AluJo SINE Alu -189 123 1 614 317 146 35 chr6 33979344 33980237 -155299317 + L2 LINE L2 1812 2803 -511 281 200 67 0 chr6 33981539 33981599 -155297955 + MIR SINE MIR 81 144 -64 2499 148 10 0 chr6 33981606 33982005 -155297549 + MER57A LTR ERV1 1 403 0 4939 144 12 32 chr6 33982005 33982590 -155296964 + MER57A-int LTR ERV1 1 567 -6970 1750 149 14 17 chr6 33982590 33982879 -155296675 + AluSx SINE Alu 3 290 -22 4939 144 12 32 chr6 33982879 33983115 -155296439 + MER57A-int LTR ERV1 567 806 -6731 * 12365 124 21 35 chr6 33983108 33983268 -155296286 + MER57A-int LTR ERV1 361 522 -5424 2186 95 3 0 chr6 33983268 33983562 -155295992 - AluSx SINE Alu -17 295 1 12365 124 21 35 chr6 33983562 33983680 -155295874 + MER57A-int LTR ERV1 522 640 -5306 2314 75 0 25 chr6 33983680 33983999 -155295555 - AluY SINE Alu 0 311 1 12365 124 21 35 chr6 33983999 33984525 -155295029 + MER57A-int LTR ERV1 640 1172 -4774 2493 40 7 0 chr6 33984525 33984827 -155294727 + AluY SINE Alu 1 304 -7 12365 124 21 35 chr6 33984827 33985626 -155293928 + MER57A-int LTR ERV1 1172 1937 -4009 1931 138 0 0 chr6 33985626 33985917 -155293637 + AluSx SINE Alu 1 291 -21 12365 124 21 35 chr6 33985917 33986272 -155293282 + MER57A-int LTR ERV1 1937 2295 -3651 1255 160 5 0 chr6 33986289 33986501 -155293053 + AluSg/x SINE Alu 89 301 -9 321 26 0 0 chr6 33986515 33986553 -155293001 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 1404 105 0 0 chr6 33986553 33986743 -155292811 + MER57A-int LTR ERV1 5036 5225 -2312 939 53 0 0 chr6 33986743 33986857 -155292697 - AluY SINE Alu -15 296 183 14196 87 21 4 chr6 33986857 33988753 -155290801 + MER57A-int LTR ERV1 5219 7146 -391 671 93 22 93 chr6 33988753 33988892 -155290662 + LTR54B LTR ERV1 3 131 -367 1509 101 101 8 chr6 33988892 33988971 -155290583 + MER57A-int LTR ERV1 7279 7349 -188 203 0 0 36 chr6 33988971 33988999 -155290555 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 1509 101 101 8 chr6 33988999 33989156 -155290398 + MER57A-int LTR ERV1 7349 7537 0 2440 119 42 0 chr6 33989156 33989535 -155290019 + MER57A LTR ERV1 1 395 -8 1913 105 25 68 chr6 33989535 33989860 -155289694 - AluSx SINE Alu -1 311 1 1235 86 0 0 chr6 33989880 33990043 -155289511 - AluY SINE Alu -18 293 131 185 316 35 0 chr6 33990810 33990867 -155288687 + L2 LINE L2 3238 3296 -17 2086 86 69 0 chr6 33994040 33994331 -155285223 + AluSp SINE Alu 1 311 -2 313 333 100 52 chr6 33994458 33994689 -155284865 - L3 LINE CR1 -1006 571 330 2840 9 0 0 chr6 33995790 33996108 -155283446 - AluYb8 SINE Alu 0 318 1 339 279 57 51 chr6 33996153 33996331 -155283223 + MER5A DNA MER1_type 1 189 0 1457 218 58 93 chr6 33996752 33997386 -155282168 + LTR9 LTR ERV1 1 612 0 307 207 17 0 chr6 33997431 33997489 -155282065 + HUERS-P3 LTR ERV1 38 96 -7322 1492 167 7 66 chr6 33997494 33997799 -155281755 + HUERS-P3 LTR ERV1 256 542 -6876 8425 161 16 18 chr6 33997808 33998821 -155280733 + HUERS-P3 LTR ERV1 750 1764 -6833 4380 180 12 43 chr6 33998821 33999806 -155279748 + LTR5 LTR ERVK 1 955 -14 8425 161 16 18 chr6 33999806 34001034 -155278520 + HUERS-P3 LTR ERV1 1764 3284 -5313 1017 127 7 0 chr6 34001027 34001169 -155278385 + HUERS-P3 LTR ERV1 4539 4681 -4238 * 4145 127 66 8 chr6 34001171 34001810 -155277744 + HUERS-P3 LTR ERV1 4901 5576 -3343 4140 204 27 1 chr6 34001796 34002528 -155277026 + HUERS-P3 LTR ERV1 6162 6912 -2007 * 477 179 0 36 chr6 34002528 34002640 -155276914 + HUERS-P3 LTR ERV1 6865 6972 -1947 699 128 111 39 chr6 34002644 34002824 -155276730 + HUERS-P3 LTR ERV1 2384 2576 -2439 1539 140 3 14 chr6 34003107 34003378 -155276176 + HUERS-P3 LTR ERV1 7176 8919 0 1652 227 39 81 chr6 34003378 34004017 -155275537 + LTR9 LTR ERV1 1 612 0 209 340 75 19 chr6 34004886 34004992 -155274562 + MIR SINE MIR 40 151 -57 186 207 103 46 chr6 34005211 34005298 -155274256 + L2 LINE L2 2966 3057 -215 248 130 22 0 chr6 34005425 34005471 -155274083 + CT-rich Low_complexity Low_complexity 2 48 0 2080 105 10 0 chr6 34005508 34005802 -155273752 - AluSg SINE Alu -13 297 1 431 344 78 0 chr6 34006876 34007068 -155272486 + MIR SINE MIR 50 256 -6 2763 224 19 0 chr6 34010405 34011021 -155268533 + L1 LINE L1 4750 5377 -769 355 264 7 68 chr6 34013882 34014030 -155265524 + MIR3 SINE MIR 50 188 -20 203 277 170 71 chr6 34015100 34015241 -155264313 - MER5B DNA MER1_type 0 178 24 2081 82 7 4 chr6 34015399 34015716 -155263838 - AluSp SINE Alu 0 321 4 1906 114 3 21 chr6 34015721 34016032 -155263522 - AluSq SINE Alu 0 306 1 1594 144 0 61 chr6 34016216 34016528 -155263026 - AluJb SINE Alu -15 297 5 2156 121 0 0 chr6 34016537 34016842 -155262712 - AluSx SINE Alu -7 305 1 1055 195 0 5 chr6 34016908 34017043 -155262511 + AluJo SINE Alu 1 136 -176 2291 83 10 0 chr6 34017043 34017344 -155262210 + AluSp SINE Alu 2 305 -8 1055 195 0 5 chr6 34017344 34017408 -155262146 + AluJo SINE Alu 136 199 -113 324 65 0 0 chr6 34017416 34017462 -155262092 + Alu SINE Alu 257 302 0 875 129 0 23 chr6 34017511 34017643 -155261911 - FLAM_C SINE Alu -4 129 1 2004 99 35 0 chr6 34017668 34017952 -155261602 - AluSp SINE Alu -19 294 1 1544 117 36 0 chr6 34018216 34018438 -155261116 + MER30 DNA MER1_type 1 230 0 1996 101 0 52 chr6 34018715 34019022 -155260532 - AluSq SINE Alu -20 293 3 871 259 8 51 chr6 34019159 34019363 -155260191 - MIR SINE MIR 0 262 70 2218 116 7 0 chr6 34019363 34019673 -155259881 + AluSq SINE Alu 1 312 -1 871 259 8 51 chr6 34019673 34019723 -155259831 - MIR SINE MIR -192 70 19 2120 136 0 0 chr6 34019749 34020059 -155259495 - AluSx SINE Alu -2 310 1 2253 96 3 0 chr6 34020069 34020370 -155259184 - AluSp SINE Alu -11 302 1 230 336 96 34 chr6 34020373 34020519 -155259035 - L2 LINE L2 -566 2748 2594 338 309 129 0 chr6 34020582 34020721 -155258833 + L2 LINE L2 3116 3272 0 729 185 90 42 chr6 34020979 34021168 -155258386 - MIR SINE MIR -63 199 2 215 305 42 32 chr6 34023206 34023301 -155256253 + MIR SINE MIR 21 116 -146 650 127 16 0 chr6 34023337 34023463 -155256091 - MER33 DNA MER1_type 0 363 236 940 114 76 11 chr6 34023470 34023629 -155255925 - Tigger4(Zombi) DNA MER2_type -11 2720 2546 2242 89 13 10 chr6 34023629 34023933 -155255621 - AluSx SINE Alu -7 305 1 940 114 76 11 chr6 34023933 34023957 -155255597 - Tigger4(Zombi) DNA MER2_type -185 2546 2525 790 161 0 0 chr6 34023953 34024077 -155255477 - Tigger4(Zombi) DNA MER2_type -2607 124 1 * 270 222 63 0 chr6 34024029 34024092 -155255462 + MER46A DNA MER2_type 97 163 -73 * 2107 112 16 3 chr6 34024124 34024429 -155255125 + AluSq SINE Alu 1 309 -4 2243 77 0 7 chr6 34024439 34024753 -155254801 + AluSx SINE Alu 1 312 0 1087 179 0 0 chr6 34024753 34024932 -155254622 + AluJb SINE Alu 134 312 0 678 221 0 0 chr6 34024932 34025077 -155254477 - MER33 DNA MER1_type -179 145 1 277 339 46 8 chr6 34025313 34025443 -155254111 + L2 LINE L2 2567 2701 -613 2277 102 0 0 chr6 34025470 34025774 -155253780 - AluSx SINE Alu -8 304 1 662 149 67 8 chr6 34025835 34025969 -155253585 - Charlie1 DNA MER1_type 0 2761 2620 * 675 233 33 73 chr6 34025953 34026082 -155253472 - Charlie1 DNA MER1_type -2522 239 106 2423 47 0 3 chr6 34026082 34026382 -155253172 - AluY SINE Alu -12 299 1 2429 48 0 0 chr6 34026390 34026685 -155252869 - AluY SINE Alu -15 296 2 675 233 33 73 chr6 34026685 34026791 -155252763 - Charlie1 DNA MER1_type -2662 99 5 349 231 46 31 chr6 34027126 34027256 -155252298 + L2 LINE L2 3134 3265 -7 186 133 0 0 chr6 34028582 34028612 -155250942 + (GGA)n Simple_repeat Simple_repeat 3 32 0 245 229 0 0 chr6 34029030 34029078 -155250476 + C-rich Low_complexity Low_complexity 1 48 0 197 272 54 22 chr6 34030097 34030189 -155249365 + MIR SINE MIR 29 123 -139 397 203 70 47 chr6 34032505 34032633 -155246921 + MIR SINE MIR 110 240 -22 192 125 0 0 chr6 34032692 34032724 -155246830 + MIR SINE MIR 84 115 -147 207 0 0 0 chr6 34036186 34036209 -155243345 + (TCCCC)n Simple_repeat Simple_repeat 1 23 0 459 328 0 0 chr6 34040339 34040470 -155239084 + MIR SINE MIR 18 148 -114 1351 174 35 41 chr6 34040483 34040609 -155238945 - Cheshire DNA MER1_type 0 2420 2295 2145 113 0 0 chr6 34040609 34040901 -155238653 - AluSx SINE Alu -20 292 1 2129 85 3 26 chr6 34040901 34041207 -155238347 - AluSx SINE Alu -13 299 1 1351 174 35 41 chr6 34041207 34041242 -155238312 - Cheshire DNA MER1_type -124 2296 2262 2168 105 3 3 chr6 34041242 34041547 -155238007 + AluSq SINE Alu 1 305 -8 1637 168 16 36 chr6 34041557 34041866 -155237688 + AluJb SINE Alu 1 303 -9 1351 174 35 41 chr6 34041866 34042059 -155237495 - Cheshire DNA MER1_type -167 2253 2055 1592 210 64 11 chr6 34042065 34042422 -155237132 - Cheshire DNA MER1_type -2044 376 1 261 228 51 38 chr6 34042431 34042510 -155237044 + MIR SINE MIR 162 241 -21 262 309 0 12 chr6 34042658 34042739 -155236815 - L2 LINE L2 0 3272 3193 2086 95 0 26 chr6 34042800 34043104 -155236450 - AluSg SINE Alu -14 296 1 2006 125 13 7 chr6 34043143 34043448 -155236106 - AluSx SINE Alu -5 307 1 957 129 6 79 chr6 34043587 34043765 -155235789 - AluJb SINE Alu -147 165 1 2169 100 3 0 chr6 34043845 34044136 -155235418 - AluSg SINE Alu -18 292 1 1631 135 54 0 chr6 34044963 34045223 -155234331 + AluSx SINE Alu 20 293 -19 1454 113 0 19 chr6 34045863 34046076 -155233478 - AluSx SINE Alu -103 209 1 823 185 15 0 chr6 34046077 34046212 -155233342 - AluJo SINE Alu -174 138 2 2298 109 0 0 chr6 34046244 34046556 -155232998 - AluSx SINE Alu 0 312 1 301 266 145 0 chr6 34046584 34046708 -155232846 - HAL1 LINE L1 -1472 1035 894 2443 68 0 3 chr6 34046744 34047055 -155232499 - AluY SINE Alu -1 310 1 2210 105 0 3 chr6 34047058 34047372 -155232182 - AluSq SINE Alu 0 313 1 290 264 23 0 chr6 34048201 34048288 -155231266 - HAL1 LINE L1 -1597 910 822 2263 88 3 0 chr6 34048295 34048590 -155230964 + AluSp SINE Alu 1 296 -17 361 222 44 44 chr6 34048591 34048681 -155230873 - L1MC4 LINE L1 -1340 6702 6613 1540 113 0 26 chr6 34048701 34048932 -155230622 + AluSx SINE Alu 1 225 -87 1133 122 6 0 chr6 34048932 34049088 -155230466 - AluSx SINE Alu -155 157 1 2311 71 10 3 chr6 34049106 34049415 -155230139 - AluY SINE Alu 0 311 1 2201 82 0 3 chr6 34049417 34049708 -155229846 - AluSc SINE Alu -17 292 3 465 222 5 101 chr6 34049709 34049764 -155229790 + Charlie2 DNA MER1_type 2687 2746 -116 2145 119 0 0 chr6 34049764 34050059 -155229495 - AluSg SINE Alu -15 295 1 465 222 5 101 chr6 34050059 34050192 -155229362 + Charlie2 DNA MER1_type 2746 2857 -5 628 288 7 7 chr6 34050207 34050358 -155229196 + Zaphod DNA AcHobo 2 152 -3879 1449 206 88 57 chr6 34050358 34050542 -155229012 - MLT1E LTR MaLR 0 593 416 2100 122 3 0 chr6 34050542 34050853 -155228701 + AluSx SINE Alu 1 312 0 1449 206 88 57 chr6 34050853 34051056 -155228498 - MLT1E LTR MaLR -177 416 194 1905 137 0 16 chr6 34051068 34051374 -155228180 - AluSg SINE Alu -9 301 1 1117 179 0 0 chr6 34051374 34051569 -155227985 + AluJo SINE Alu 117 311 -1 524 174 43 105 chr6 34051585 34051712 -155227842 + L1MC4a LINE L1 7474 7607 -201 1079 168 0 6 chr6 34051712 34051879 -155227675 + FRAM SINE Alu 1 166 0 524 174 43 105 chr6 34051879 34051912 -155227642 + L1MC4a LINE L1 7607 7493 -315 1754 123 30 4 chr6 34051912 34052180 -155227374 + AluSx SINE Alu 34 308 -4 524 174 43 105 chr6 34052180 34052269 -155227285 + L1MC4a LINE L1 7492 7585 -223 2379 165 55 0 chr6 34052276 34052474 -155227080 - MLT1C LTR MaLR 0 467 281 279 0 0 0 chr6 34052474 34052505 -155227049 + (TG)n Simple_repeat Simple_repeat 2 32 0 2037 103 0 33 chr6 34052505 34052663 -155226891 - AluSx SINE Alu -27 285 140 2164 103 23 0 chr6 34052663 34052965 -155226589 - AluSg SINE Alu -1 309 1 2037 103 0 33 chr6 34052965 34053101 -155226453 - AluSx SINE Alu -172 140 1 2379 165 55 0 chr6 34053101 34053325 -155226229 - MLT1C LTR MaLR -185 282 27 1806 95 56 0 chr6 34053326 34053578 -155225976 - L1PA11 LINE L1 -1 6173 5908 1926 137 3 13 chr6 34053597 34053903 -155225651 - AluSg SINE Alu -7 303 1 2013 128 13 0 chr6 34053906 34054210 -155225344 - AluY SINE Alu -3 308 1 262 122 0 0 chr6 34054237 34054278 -155225276 - MLT1C LTR MaLR -426 41 1 392 258 8 31 chr6 34054297 34054425 -155225129 + L1MC4 LINE L1 7918 8042 0 242 355 78 14 chr6 34054619 34054760 -155224794 - MIR SINE MIR -66 196 47 2316 58 0 14 chr6 34054829 34054988 -155224566 - AluY SINE Alu -20 291 136 2396 78 0 0 chr6 34054988 34055294 -155224260 - AluY SINE Alu -5 306 1 2316 58 0 14 chr6 34055294 34055429 -155224125 - AluY SINE Alu -175 136 1 1475 196 7 11 chr6 34055505 34055780 -155223774 + AluJo SINE Alu 6 279 -33 2240 89 0 25 chr6 34055783 34056099 -155223455 + AluSg SINE Alu 3 310 0 2083 118 0 19 chr6 34056321 34056635 -155222919 - AluSx SINE Alu -4 308 1 204 125 0 0 chr6 34056658 34056690 -155222864 + (A)n Simple_repeat Simple_repeat 1 32 0 2094 131 0 6 chr6 34056797 34057111 -155222443 + AluSx SINE Alu 1 312 0 211 306 14 0 chr6 34057569 34057641 -155221913 - MIR3 SINE MIR -1 207 135 2198 95 10 0 chr6 34058182 34058487 -155221067 - AluSp SINE Alu -5 308 1 477 203 31 61 chr6 34058491 34058604 -155220950 - Charlie2 DNA MER1_type 0 2862 2747 1751 114 21 25 chr6 34058604 34058885 -155220669 + AluSx SINE Alu 1 280 -32 288 70 0 0 chr6 34058888 34058931 -155220623 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 477 203 31 61 chr6 34058931 34058976 -155220578 - Charlie2 DNA MER1_type -117 2745 2705 1523 106 17 13 chr6 34058976 34059211 -155220343 - AluSg/x SINE Alu 0 312 77 2061 111 10 16 chr6 34059211 34059517 -155220037 - AluSx SINE Alu -8 304 1 682 167 9 9 chr6 34059527 34059641 -155219913 - FLAM_C SINE Alu -21 122 9 2160 98 3 7 chr6 34059649 34059954 -155219600 - AluSg SINE Alu -6 304 1 2122 100 0 7 chr6 34059956 34060255 -155219299 - AluSx SINE Alu -15 297 1 2079 122 3 0 chr6 34060257 34060552 -155219002 - AluSx SINE Alu -16 296 1 629 239 161 6 chr6 34060554 34060619 -155218935 - Charlie2 DNA MER1_type -154 2708 2654 1934 112 0 55 chr6 34060619 34060931 -155218623 + AluSg SINE Alu 1 295 -15 629 239 161 6 chr6 34060931 34061195 -155218359 - Charlie2 DNA MER1_type -208 2654 2328 2286 45 0 54 chr6 34061221 34061535 -155218019 - AluY SINE Alu -14 297 1 1402 170 24 114 chr6 34061588 34061713 -155217841 + AluJo SINE Alu 3 138 -174 2375 57 7 0 chr6 34061713 34062010 -155217544 - AluSx SINE Alu -13 299 1 1402 170 24 114 chr6 34062010 34062182 -155217372 + AluJo SINE Alu 138 268 -44 2330 71 7 10 chr6 34062182 34062491 -155217063 - AluSc SINE Alu -1 308 1 1402 170 24 114 chr6 34062491 34062533 -155217021 + AluJo SINE Alu 268 312 0 419 296 107 0 chr6 34062694 34062863 -155216691 - Charlie2 DNA MER1_type -2641 221 35 201 313 12 24 chr6 34065430 34065513 -155214041 + CT-rich Low_complexity Low_complexity 4 85 0 276 100 0 0 chr6 34066950 34066990 -155212564 + (GGA)n Simple_repeat Simple_repeat 2 41 0 268 260 0 0 chr6 34067001 34067074 -155212480 + GA-rich Low_complexity Low_complexity 2 74 0 1296 91 50 59 chr6 34068649 34068869 -155210685 - AluJb SINE Alu -7 305 88 33 0 0 0 chr6 34069409 34069442 -155210112 + GC_rich Low_complexity Low_complexity 1 33 0 254 306 0 35 chr6 34069506 34069650 -155209904 + (CGGGG)n Simple_repeat Simple_repeat 1 139 0 596 225 112 6 chr6 34069868 34070037 -155209517 + MIR SINE MIR 20 206 -56 360 264 7 68 chr6 34073910 34074058 -155205496 + MIR3 SINE MIR 50 188 -20 204 305 156 57 chr6 34075128 34075269 -155204285 - MER5B DNA MER1_type 0 178 24 2117 82 7 4 chr6 34075427 34075744 -155203810 - AluSp SINE Alu 0 321 4 1138 131 0 33 chr6 34075749 34075953 -155203601 - AluSq SINE Alu 0 306 109 240 136 23 0 chr6 34075957 34076001 -155203553 - MER3 DNA MER1_type -163 46 2 645 165 28 60 chr6 34076007 34076189 -155203365 - MER105 DNA DNA -1 203 28 380 230 0 0 chr6 34077378 34077452 -155202102 + L2 LINE L2 3233 3306 -7 246 62 0 0 chr6 34078080 34078112 -155201442 + (TGG)n Simple_repeat Simple_repeat 2 33 0 184 224 0 24 chr6 34078944 34079029 -155200525 + GA-rich Low_complexity Low_complexity 4 86 0 441 54 0 0 chr6 34080386 34080442 -155199112 + (CA)n Simple_repeat Simple_repeat 1 56 0 180 163 0 0 chr6 34080503 34080546 -155199008 + (CCCTG)n Simple_repeat Simple_repeat 3 45 0 234 62 0 0 chr6 34080821 34080853 -155198701 + (GA)n Simple_repeat Simple_repeat 1 32 0 363 232 21 35 chr6 34081021 34081163 -155198391 + GA-rich Low_complexity Low_complexity 6 145 0 306 409 39 18 chr6 34081287 34081568 -155197986 + L2 LINE L2 2303 2589 -725 2215 105 3 0 chr6 34081668 34081962 -155197592 - AluSp SINE Alu -18 295 1 320 274 76 38 chr6 34082369 34082526 -155197028 + L2 LINE L2 3128 3290 -23 1618 209 34 59 chr6 34083974 34084081 -155195473 + MLT1C LTR MaLR 1 109 -358 2023 114 3 17 chr6 34084081 34084378 -155195176 + AluSq SINE Alu 1 293 -20 1618 209 34 59 chr6 34084378 34084744 -155194810 + MLT1C LTR MaLR 109 462 -5 317 322 231 30 chr6 34084760 34084913 -155194641 + L3 LINE CR1 727 848 -729 2299 106 0 0 chr6 34084913 34085214 -155194340 + AluSx SINE Alu 1 301 -11 317 322 231 30 chr6 34085214 34085489 -155194065 + L3 LINE CR1 848 1241 -336 273 197 16 134 chr6 34085464 34085591 -155193963 - MIR3 SINE MIR 0 208 97 * 251 292 45 11 chr6 34085602 34085691 -155193863 + L3 LINE CR1 1485 1576 -1 1581 85 163 60 chr6 34086428 34086710 -155192844 - AluSx SINE Alu -1 311 1 849 137 8 23 chr6 34086891 34087022 -155192532 + FLAM_C SINE Alu 3 131 -2 198 322 17 0 chr6 34087254 34087313 -155192241 + L2 LINE L2 3254 3313 0 31 26 0 0 chr6 34087803 34087841 -155191713 + GC_rich Low_complexity Low_complexity 1 38 0 246 62 0 0 chr6 34089032 34089064 -155190490 + (CA)n Simple_repeat Simple_repeat 1 32 0 230 245 0 0 chr6 34089158 34089207 -155190347 + CT-rich Low_complexity Low_complexity 1 49 0 281 282 17 17 chr6 34091792 34091909 -155187645 + (CA)n Simple_repeat Simple_repeat 2 118 0 225 325 12 0 chr6 34092478 34092561 -155186993 + CT-rich Low_complexity Low_complexity 3 86 0 192 77 0 0 chr6 34093268 34093294 -155186260 + (CCG)n Simple_repeat Simple_repeat 3 28 0 234 252 34 34 chr6 34093299 34093418 -155186136 + C-rich Low_complexity Low_complexity 1 119 0 200 247 54 0 chr6 34093473 34093566 -155185988 + (CGCGG)n Simple_repeat Simple_repeat 5 102 0 * 221 239 28 0 chr6 34093521 34093592 -155185962 + (CGG)n Simple_repeat Simple_repeat 1 73 0 307 247 11 22 chr6 34093594 34093683 -155185871 + (CCG)n Simple_repeat Simple_repeat 3 90 0 277 232 0 42 chr6 34094312 34094407 -155185147 + (CA)n Simple_repeat Simple_repeat 2 92 0 275 247 0 26 chr6 34094904 34094981 -155184573 + GA-rich Low_complexity Low_complexity 4 78 0 229 258 16 0 chr6 34096064 34096126 -155183428 + CT-rich Low_complexity Low_complexity 2 64 0 337 314 26 7 chr6 34100582 34100735 -155178819 + CT-rich Low_complexity Low_complexity 4 159 0 333 314 0 38 chr6 34101006 34101191 -155178363 + C-rich Low_complexity Low_complexity 2 179 0 570 112 8 37 chr6 34101296 34101430 -155178124 + (GGA)n Simple_repeat Simple_repeat 1 130 0 245 258 0 15 chr6 34101459 34101525 -155178029 + GA-rich Low_complexity Low_complexity 3 67 0 28 0 0 0 chr6 34105174 34105202 -155174352 + AT_rich Low_complexity Low_complexity 1 28 0 468 288 60 38 chr6 34108345 34108529 -155171025 - MIR SINE MIR -1 261 74 2298 109 0 3 chr6 34109341 34109652 -155169902 - AluSg SINE Alu 0 310 1 22 35 0 0 chr6 34110250 34110279 -155169275 + GC_rich Low_complexity Low_complexity 1 29 0 383 297 0 0 chr6 34110509 34110620 -155168934 + G-rich Low_complexity Low_complexity 1 111 0 441 0 0 0 chr6 34111778 34111827 -155167727 + (CA)n Simple_repeat Simple_repeat 2 50 0 371 170 199 123 chr6 34112224 34112345 -155167209 + L1MC5 LINE L1 6730 6869 -1092 2280 61 24 3 chr6 34112345 34112642 -155166912 - AluY SINE Alu -8 303 1 371 170 199 123 chr6 34112642 34112691 -155166863 + L1MC5 LINE L1 6869 6913 -1048 546 204 68 15 chr6 34112701 34112833 -155166721 + FLAM_C SINE Alu 1 139 -4 618 246 79 9 chr6 34112850 34113078 -155166476 + L1MC5 LINE L1 6971 7214 -747 320 256 152 26 chr6 34113186 34113455 -155166099 + L1MC5 LINE L1 7397 7699 -262 294 282 43 103 chr6 34113629 34113863 -155165691 + L1MEd LINE L1 329 548 -5571 * 673 261 50 12 chr6 34113862 34114103 -155165451 + L1MC4a LINE L1 5613 5862 -1946 1955 172 0 0 chr6 34114103 34114406 -155165148 - AluJb SINE Alu -9 303 1 361 276 57 8 chr6 34115559 34115682 -155163872 - L2 LINE L2 -350 2963 2835 195 312 73 63 chr6 34116889 34117094 -155162460 - L2 LINE L2 -238 3034 2828 770 146 5 137 chr6 34118396 34118546 -155161008 + MER2 DNA MER2_type 1 169 -176 1674 125 12 0 chr6 34118546 34118786 -155160768 - AluSp SINE Alu -29 284 42 2173 101 0 26 chr6 34118787 34119093 -155160461 - AluSq SINE Alu -15 298 1 770 146 5 137 chr6 34119093 34119159 -155160395 + MER2 DNA MER2_type 168 190 -155 3029 151 37 21 chr6 34119159 34119528 -155160026 + Tigger3b DNA MER2_type 1 386 -2642 2344 67 0 13 chr6 34119528 34119828 -155159726 + AluY SINE Alu 1 296 -15 3029 151 37 21 chr6 34119828 34120079 -155159475 + Tigger3b DNA MER2_type 386 631 -600 2342 108 0 0 chr6 34120099 34120405 -155159149 + AluY SINE Alu 1 306 -5 245 149 0 21 chr6 34120411 34120458 -155159096 - LTR56 LTR ERV1 -51 394 349 443 128 86 8 chr6 34120464 34120581 -155158973 + Tigger3b DNA MER2_type 572 697 -535 2400 78 0 20 chr6 34120581 34120887 -155158667 + AluY SINE Alu 1 300 -11 2716 153 49 6 chr6 34121575 34122085 -155157469 + Tigger3b DNA MER2_type 698 1229 -2 2017 104 42 7 chr6 34122136 34122423 -155157131 - AluSx SINE Alu -11 301 5 451 189 0 0 chr6 34122425 34122499 -155157055 + MER2 DNA MER2_type 272 345 0 2313 92 6 19 chr6 34122767 34123083 -155156471 + AluSx SINE Alu 1 312 0 188 259 49 62 chr6 34123788 34123869 -155155685 - L2 LINE L2 -395 2918 2839 2423 100 0 0 chr6 34123937 34124236 -155155318 + AluSg SINE Alu 1 299 -11 2040 110 51 7 chr6 34124256 34124548 -155155006 + AluSx SINE Alu 1 305 -7 2535 57 0 7 chr6 34124551 34124852 -155154702 + AluY SINE Alu 1 299 -12 1009 106 19 50 chr6 34124945 34125106 -155154448 + AluJb SINE Alu 156 311 -1 538 252 87 0 chr6 34125159 34125286 -155154268 - FLAM_A SINE Alu -4 138 1 411 242 118 31 chr6 34125404 34125565 -155153989 + L2 LINE L2 3138 3312 -1 2753 227 172 46 chr6 34126058 34126751 -155152803 + L2 LINE L2 1519 2372 -942 2223 110 0 7 chr6 34126751 34127043 -155152511 + AluSx SINE Alu 1 290 -22 2753 227 172 46 chr6 34127043 34127328 -155152226 + L2 LINE L2 2372 2620 -694 369 130 0 0 chr6 34127330 34127384 -155152170 + MER20 DNA MER1_type 1 54 -165 525 163 10 0 chr6 34127388 34127486 -155152068 - MER20 DNA MER1_type -61 158 60 2336 77 3 0 chr6 34127487 34127784 -155151770 + AluY SINE Alu 1 298 -13 2047 123 3 23 chr6 34127788 34128098 -155151456 + AluJb SINE Alu 2 305 -7 1229 239 125 30 chr6 34128137 34128701 -155150853 + L2 LINE L2 2713 3309 -4 216 291 196 48 chr6 34130462 34130682 -155148872 - MIR3 SINE MIR -12 250 3 23 33 0 0 chr6 34131145 34131175 -155148379 + AT_rich Low_complexity Low_complexity 1 30 0 653 285 131 7 chr6 34131196 34131607 -155147947 + L1M4 LINE L1 3865 4326 -1820 2552 51 0 13 chr6 34131681 34131996 -155147558 + AluY SINE Alu 1 311 0 478 35 0 0 chr6 34131997 34132055 -155147499 + AluSq SINE Alu 134 191 -122 2505 78 7 0 chr6 34132177 34132484 -155147070 + AluSg1 SINE Alu 1 309 0 2119 133 0 10 chr6 34132548 34132848 -155146706 + AluSq SINE Alu 2 298 -15 201 296 0 0 chr6 34132976 34133047 -155146507 + (TATATG)n Simple_repeat Simple_repeat 3 73 0 23 0 0 0 chr6 34133157 34133180 -155146374 + AT_rich Low_complexity Low_complexity 1 23 0 2172 85 78 0 chr6 34133192 34133474 -155146080 - AluY SINE Alu -7 304 1 2260 89 0 0 chr6 34133477 34133757 -155145797 - AluSg SINE Alu -30 280 1 2156 128 10 19 chr6 34133812 34134125 -155145429 - AluSx SINE Alu -2 310 1 22 35 0 0 chr6 34134125 34134154 -155145400 + AT_rich Low_complexity Low_complexity 1 29 0 858 137 0 0 chr6 34134154 34134271 -155145283 - FLAM_C SINE Alu -25 118 2 1362 183 23 108 chr6 34134557 34134956 -155144598 - MLT1A1 LTR MaLR 0 365 1 1627 154 7 32 chr6 34134997 34135277 -155144277 - AluSx SINE Alu -10 302 30 2355 96 0 0 chr6 34135701 34135993 -155143561 + AluSq SINE Alu 1 292 -21 2158 105 7 23 chr6 34135993 34136297 -155143257 + AluSp SINE Alu 1 300 -13 1919 161 28 0 chr6 34136308 34136599 -155142955 + AluJb SINE Alu 1 299 -13 2234 102 6 16 chr6 34136977 34137290 -155142264 + AluSg SINE Alu 1 310 0 291 383 26 0 chr6 34137335 34137450 -155142104 - L2 LINE L2 -39 3233 3116 307 71 0 0 chr6 34137758 34137800 -155141754 + AluJb SINE Alu 66 107 -195 666 274 34 53 chr6 34138010 34138285 -155141269 + MLT1J LTR MaLR 3 340 -171 2474 82 0 22 chr6 34138285 34138601 -155140953 + AluSx SINE Alu 3 311 -1 666 274 34 53 chr6 34138601 34138725 -155140829 + MLT1J LTR MaLR 340 465 -46 548 157 0 0 chr6 34138725 34138808 -155140746 - AluJ/FLAM SINE Alu -228 84 2 849 186 0 0 chr6 34139492 34139632 -155139922 + FLAM_C SINE Alu 1 140 -3 2153 91 11 11 chr6 34139737 34140051 -155139503 + AluSx SINE Alu 1 314 0 1130 135 26 109 chr6 34140053 34140262 -155139292 - LTR51 LTR ERV1 -404 267 83 2441 88 3 3 chr6 34140262 34140570 -155138984 - AluSg SINE Alu -2 308 1 1130 135 26 109 chr6 34140570 34140626 -155138928 - LTR51 LTR ERV1 -588 83 24 623 320 55 33 chr6 34140654 34141073 -155138481 - L2 LINE L2 -550 2764 2337 805 194 0 8 chr6 34141143 34141260 -155138294 + FLAM_C SINE Alu 1 118 -184 192 40 0 0 chr6 34141260 34141285 -155138269 + (CA)n Simple_repeat Simple_repeat 2 26 0 805 194 0 8 chr6 34141285 34141301 -155138253 + FLAM_C SINE Alu 118 133 -169 2233 78 0 7 chr6 34141337 34141619 -155137935 + AluSc SINE Alu 18 297 -12 2212 104 3 0 chr6 34141657 34141946 -155137608 - AluSx SINE Alu -22 290 1 1261 128 0 0 chr6 34142008 34142188 -155137366 - AluSg SINE Alu -12 298 119 703 136 24 32 chr6 34142237 34142362 -155137192 - AluSg SINE Alu -179 131 8 507 114 0 0 chr6 34142362 34142441 -155137113 - AluS SINE Alu -3 308 230 1523 102 0 0 chr6 34142441 34142638 -155136916 - AluSc SINE Alu -112 197 1 1107 148 0 34 chr6 34142640 34142816 -155136738 - AluSg/x SINE Alu -20 292 123 814 159 0 100 chr6 34143150 34143320 -155136234 + FAM SINE Alu 1 153 -32 1149 50 15 23 chr6 34143322 34143605 -155135949 - AluY SINE Alu 0 352 2 3904 115 13 0 chr6 34143652 34144199 -155135355 + MER41A LTR ERV1 1 554 0 2150 111 0 36 chr6 34144215 34144522 -155135032 - AluSq SINE Alu -17 296 1 1766 179 0 23 chr6 34144571 34144656 -155134898 + AluJb SINE Alu 1 86 -226 4786 72 19 84 chr6 34144656 34144930 -155134624 + LTR8 LTR ERV1 1 291 -400 2354 115 0 0 chr6 34144930 34145243 -155134311 + AluSq SINE Alu 1 313 0 4786 72 19 84 chr6 34145243 34145535 -155134019 + LTR8 LTR ERV1 291 511 -180 2168 124 20 0 chr6 34145535 34145841 -155133713 + AluSx SINE Alu 1 312 0 4786 72 19 84 chr6 34145841 34146010 -155133544 + LTR8 LTR ERV1 511 689 -2 1766 179 0 23 chr6 34146010 34146225 -155133329 + AluJb SINE Alu 86 294 -18 2040 196 141 44 chr6 34146513 34146589 -155132965 - LTR29 LTR ERV1 0 622 555 1759 141 69 0 chr6 34146589 34146851 -155132703 + AluSx SINE Alu 1 280 -32 228 35 0 0 chr6 34146854 34146883 -155132671 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2040 196 141 44 chr6 34146883 34147369 -155132185 - LTR29 LTR ERV1 -68 554 1 2340 100 10 0 chr6 34147412 34147713 -155131841 - AluSx SINE Alu -8 304 1 2110 101 0 7 chr6 34147715 34147992 -155131562 - AluSx SINE Alu -14 298 24 777 107 0 107 chr6 34147997 34148146 -155131408 - FLAM_C SINE Alu 0 133 1 1978 209 58 7 chr6 34148676 34149121 -155130433 - MER21B LTR ERV1 -49 814 347 1956 149 20 0 chr6 34149143 34149439 -155130115 - AluSq SINE Alu -11 302 1 464 132 0 0 chr6 34149465 34149533 -155130021 + AluJ/FRAM SINE Alu 231 298 -14 2246 98 11 0 chr6 34149542 34149828 -155129726 + AluSx SINE Alu 1 289 -23 1293 120 77 0 chr6 34149862 34150045 -155129509 - AluSx SINE Alu -115 197 1 1790 167 0 14 chr6 34150117 34150438 -155129116 - AluJb SINE Alu 0 317 1 1547 186 54 3 chr6 34150441 34150737 -155128817 - AluJo SINE Alu -1 311 1 778 115 26 94 chr6 34150756 34150901 -155128653 - L1MA8 LINE L1 -43 6248 6095 207 0 0 0 chr6 34150901 34150924 -155128630 + (GTTTG)n Simple_repeat Simple_repeat 1 23 0 2332 69 7 14 chr6 34150926 34151217 -155128337 - AluY SINE Alu -22 289 1 2169 122 0 0 chr6 34151219 34151514 -155128040 - AluSx SINE Alu -12 300 6 778 115 26 94 chr6 34151514 34151553 -155128001 - L1MA8 LINE L1 -198 6093 6071 1044 132 0 136 chr6 34151705 34151834 -155127720 + MER3 DNA MER1_type 1 83 -126 2270 75 18 0 chr6 34151834 34152113 -155127441 - AluSc SINE Alu -25 284 1 1044 132 0 136 chr6 34152113 34152225 -155127329 + MER3 DNA MER1_type 83 209 0 476 273 87 71 chr6 34152230 34152598 -155126956 - L1ME LINE L1 -358 5804 5423 1961 124 6 59 chr6 34152598 34152963 -155126591 - AluSg SINE Alu 0 310 1 476 273 87 71 chr6 34152963 34153132 -155126422 - L1ME LINE L1 -739 5423 5258 2515 70 0 10 chr6 34153260 34153573 -155125981 + AluY SINE Alu 1 310 -1 2339 89 0 16 chr6 34153579 34153882 -155125672 - AluSq SINE Alu -15 298 1 2299 172 21 38 chr6 34153884 34154307 -155125247 + MER67A LTR ERV1 80 498 -45 2097 123 3 0 chr6 34154307 34154627 -155124927 - AluSx SINE Alu 0 321 1 2299 172 21 38 chr6 34154627 34154671 -155124883 + MER67A LTR ERV1 498 541 -2 1302 145 0 0 chr6 34154672 34154879 -155124675 + L1MB5 LINE L1 5618 5824 -360 938 161 0 0 chr6 34154879 34155016 -155124538 + AluJb SINE Alu 166 302 -10 669 140 0 35 chr6 34155045 34155159 -155124395 + AluJ SINE Alu 25 134 -178 1012 182 11 6 chr6 34156796 34156977 -155122577 + AluJ SINE Alu 120 301 -11 366 120 0 67 chr6 34156977 34157052 -155122502 + L1MB5 LINE L1 5819 5888 -286 243 311 8 0 chr6 34157128 34157247 -155122307 - L1 LINE L1 -2381 3765 3646 1953 123 0 53 chr6 34157249 34157550 -155122004 - AluSx SINE Alu -19 293 9 2427 92 0 16 chr6 34157645 34157960 -155121594 - AluSg SINE Alu 0 310 1 474 331 92 21 chr6 34158068 34158349 -155121205 + L2 LINE L2 2971 3271 -1 2600 58 0 3 chr6 34158753 34159063 -155120491 - AluY SINE Alu -2 309 1 203 250 33 50 chr6 34159954 34160014 -155119540 + MIR SINE MIR 3 61 -201 280 146 0 0 chr6 34160023 34160064 -155119490 + MER57A LTR ERV1 295 335 -68 2064 126 33 0 chr6 34160151 34160453 -155119101 + AluSq SINE Alu 1 312 -1 570 249 103 5 chr6 34160466 34160651 -155118903 - MLT1L LTR MaLR -5 610 408 232 238 75 25 chr6 34161776 34161856 -155117698 - MIR SINE MIR -86 176 93 2360 89 33 0 chr6 34162330 34162632 -155116922 - AluSx SINE Alu 0 312 1 476 278 18 85 chr6 34162991 34163112 -155116442 - MIR SINE MIR 0 262 161 1945 159 23 7 chr6 34163112 34163414 -155116140 - AluJo SINE Alu -5 307 1 476 278 18 85 chr6 34163414 34163515 -155116039 - MIR SINE MIR -101 161 55 4567 83 18 32 chr6 34163515 34164139 -155115415 + SVA Other Other 772 1386 0 1535 100 62 147 chr6 34164293 34164633 -155114921 - AluYb8 SINE Alu -7 311 1 1602 172 115 41 chr6 34165319 34165754 -155113800 + LTR10A LTR ERV1 82 548 -61 618 267 42 6 chr6 34165763 34165928 -155113626 + LTR10A-int LTR ERV1 1 171 -6478 1693 100 15 92 chr6 34165947 34166283 -155113271 - LTR14B LTR ERVK -2 606 54 16118 63 3 16 chr6 34166292 34166432 -155113122 + Harlequin LTR ERV1 2035 2175 -4721 2292 94 0 26 chr6 34166432 34166739 -155112815 + AluSx SINE Alu 1 299 -13 16118 63 3 16 chr6 34166739 34166929 -155112625 + Harlequin LTR ERV1 2175 2366 -4530 2387 90 3 3 chr6 34166929 34167229 -155112325 + AluSp SINE Alu 1 300 -13 16118 63 3 16 chr6 34167229 34167254 -155112300 + Harlequin LTR ERV1 2366 2390 -4506 2557 74 3 0 chr6 34167254 34167564 -155111990 + AluY SINE Alu 1 311 0 16118 63 3 16 chr6 34167564 34167641 -155111913 + Harlequin LTR ERV1 2390 2466 -4430 2345 82 0 3 chr6 34167641 34167935 -155111619 + AluSx SINE Alu 1 293 -19 16118 63 3 16 chr6 34167935 34169650 -155109904 + Harlequin LTR ERV1 2466 4157 -2739 1416 176 186 23 chr6 34169730 34170117 -155109437 - LTR7 LTR ERV1 0 450 1 1305 98 37 0 chr6 34170117 34170332 -155109222 - HERVH LTR ERV1 0 7713 7491 2271 105 0 26 chr6 34170333 34170646 -155108908 + AluSx SINE Alu 2 306 -6 416 145 0 0 chr6 34270673 34270735 -155008819 - AluS SINE Alu -256 62 1 1092 140 73 0 chr6 34270738 34270917 -155008637 - AluSp SINE Alu -1 312 121 224 261 197 92 chr6 34270961 34271103 -155008451 + MIR3 SINE MIR 38 194 -14 229 308 0 0 chr6 34272519 34272584 -155006970 + CT-rich Low_complexity Low_complexity 3 67 0 25 51 0 0 chr6 34273329 34273368 -155006186 + AT_rich Low_complexity Low_complexity 1 39 0 1816 161 41 3 chr6 34273580 34273872 -155005682 + AluJb SINE Alu 1 303 -9 1138 145 0 0 chr6 34274088 34274240 -155005314 + FAM SINE Alu 12 163 -22 206 271 0 0 chr6 34274916 34274964 -155004590 + C-rich Low_complexity Low_complexity 1 48 0 1797 181 0 3 chr6 34275338 34275626 -155003928 + AluJo SINE Alu 1 287 -25 1766 142 0 51 chr6 34275754 34276049 -155003505 + AluJo SINE Alu 9 288 -24 241 220 0 0 chr6 34278947 34279031 -155000523 + C-rich Low_complexity Low_complexity 1 84 0 2641 47 0 0 chr6 34279825 34280124 -154999430 - AluY SINE Alu -11 300 2 1749 188 51 30 chr6 34280377 34280770 -154998784 + Tigger1 DNA MER2_type 1 401 -2017 1561 163 119 41 chr6 34280765 34280961 -154998593 + Tigger1 DNA MER2_type 2029 2208 -210 * 2193 108 4 0 chr6 34280961 34281239 -154998315 + AluSx SINE Alu 1 279 -33 1561 163 119 41 chr6 34281239 34281404 -154998150 + Tigger1 DNA MER2_type 2208 2418 0 2455 92 0 9 chr6 34282258 34282573 -154996981 + AluSx SINE Alu 1 312 0 1921 154 0 0 chr6 34282604 34282884 -154996670 - AluSx SINE Alu -32 280 1 2540 70 0 10 chr6 34283208 34283520 -154996034 + AluSc SINE Alu 1 309 0 835 190 87 88 chr6 34283606 34283681 -154995873 + MSTD LTR MaLR 1 75 -321 2524 86 0 0 chr6 34283681 34283982 -154995572 - AluSq SINE Alu -12 301 1 835 190 87 88 chr6 34283982 34284196 -154995358 + MSTD LTR MaLR 75 347 -49 1938 148 7 3 chr6 34284196 34284494 -154995060 + AluJb SINE Alu 2 300 -12 835 190 87 88 chr6 34284494 34284544 -154995010 + MSTD LTR MaLR 347 396 0 4910 201 35 47 chr6 34284975 34285154 -154994400 - L1M4 LINE L1 -1194 4952 4772 3611 126 34 50 chr6 34285154 34285734 -154993820 - L1MA8 LINE L1 -4 6287 5720 572 197 90 0 chr6 34285734 34285856 -154993698 + FLAM_A SINE Alu 1 133 0 3611 126 34 50 chr6 34285856 34286022 -154993532 - L1MA8 LINE L1 -571 5720 5553 4910 201 35 47 chr6 34286022 34286427 -154993127 - L1M4 LINE L1 -1374 4772 4364 2408 92 0 0 chr6 34286427 34286720 -154992834 + AluSg SINE Alu 1 293 -17 4910 201 35 47 chr6 34286720 34287490 -154992064 - L1M4 LINE L1 -1782 4364 3613 2430 82 3 3 chr6 34287909 34288212 -154991342 - AluSx SINE Alu -7 305 3 2335 79 7 3 chr6 34288400 34288692 -154990862 - AluSp SINE Alu -20 293 1 408 252 50 0 chr6 34288910 34289069 -154990485 - L1M4 LINE L1 -2540 3606 3440 607 161 116 9 chr6 34289076 34289188 -154990366 - FLAM_C SINE Alu -8 125 2 2174 90 0 0 chr6 34289234 34289511 -154990043 + AluSx SINE Alu 36 312 0 2015 184 179 56 chr6 34289525 34290006 -154989548 - L1MD3 LINE L1 -25 7970 7549 377 226 22 12 chr6 34290006 34290098 -154989456 - MLT1F1 LTR MaLR -443 124 39 2015 184 179 56 chr6 34290098 34290507 -154989047 - L1MD3 LINE L1 -446 7549 6698 2454 99 0 3 chr6 34290604 34290917 -154988637 + AluSx SINE Alu 1 312 0 312 216 91 0 chr6 34292191 34292279 -154987275 + L2 LINE L2 2959 3054 -259 453 35 0 0 chr6 34292279 34292337 -154987217 - AluY SINE Alu -259 59 2 2776 126 8 33 chr6 34292376 34292763 -154986791 - L1PA15 LINE L1 -1 6164 5769 240 35 0 0 chr6 34292763 34292792 -154986762 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2463 64 0 0 chr6 34292792 34293075 -154986479 - AluY SINE Alu -28 283 1 2776 126 8 33 chr6 34293075 34293169 -154986385 - L1PA15 LINE L1 -394 5771 5694 606 333 85 48 chr6 34293215 34293699 -154985855 - L1M4 LINE L1 -2208 3938 3437 781 306 87 5 chr6 34293817 34294186 -154985368 - ERVL LTR ERVL -1490 4274 3876 414 282 110 38 chr6 34294485 34294694 -154984860 - L1ME3A LINE L1 -15 6155 5932 2286 106 3 0 chr6 34294809 34295111 -154984443 - AluSp SINE Alu -10 303 1 745 262 22 65 chr6 34295112 34295467 -154984087 + L1MC5 LINE L1 7103 7442 -519 2610 70 0 3 chr6 34295506 34295818 -154983736 + AluY SINE Alu 1 311 0 203 0 0 36 chr6 34296017 34296045 -154983509 + (TTA)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr6 34296942 34296965 -154982589 + AT_rich Low_complexity Low_complexity 1 23 0 195 114 0 0 chr6 34296993 34297028 -154982526 + (TATAA)n Simple_repeat Simple_repeat 3 37 0 2162 145 0 0 chr6 34297028 34297339 -154982215 + AluSx SINE Alu 1 311 -1 2345 151 25 10 chr6 34297383 34297786 -154981768 - LTR3 LTR ERVK -2 430 22 3258 201 63 65 chr6 34302945 34303309 -154976245 + L1MB2 LINE L1 4899 5262 -909 2570 80 0 0 chr6 34303309 34303620 -154975934 + AluY SINE Alu 1 311 0 3258 201 63 65 chr6 34303620 34303893 -154975661 + L1MB2 LINE L1 5262 5534 -637 327 25 0 0 chr6 34303893 34303933 -154975621 + (CA)n Simple_repeat Simple_repeat 1 40 0 3258 201 63 65 chr6 34303933 34304560 -154974994 + L1MB2 LINE L1 5534 6167 -4 * 9591 141 20 12 chr6 34304554 34305530 -154974024 + L1MA3 LINE L1 3551 4517 -1788 2298 107 3 3 chr6 34305530 34305829 -154973725 - AluSp SINE Alu -14 299 1 9591 141 20 12 chr6 34305829 34307583 -154971971 + L1MA3 LINE L1 4517 6305 0 2753 33 0 0 chr6 34309117 34309423 -154970131 + AluYb8 SINE Alu 1 306 -12 1362 43 25 0 chr6 34309423 34309585 -154969969 + AluY SINE Alu 133 298 -13 751 79 0 0 chr6 34311240 34311341 -154968213 + HY3 scRNA scRNA 1 101 0 2474 78 3 3 chr6 34311366 34311675 -154967879 + AluY SINE Alu 3 311 0 479 161 9 54 chr6 34311684 34311796 -154967758 + L1MB7 LINE L1 6061 6167 -17 707 246 29 11 chr6 34311876 34312051 -154967503 + MER5B DNA MER1_type 1 178 0 1053 160 11 6 chr6 34312110 34312285 -154967269 - FRAM SINE Alu 0 176 1 212 321 0 0 chr6 34312309 34312362 -154967192 + L2 LINE L2 3142 3194 -78 2531 59 3 0 chr6 34313176 34313480 -154966074 - AluSp SINE Alu -8 305 1 203 303 0 45 chr6 34314170 34314259 -154965295 + GA-rich Low_complexity Low_complexity 2 86 0 392 243 32 119 chr6 34314295 34314513 -154965041 - L1MC4 LINE L1 -65 7977 7779 464 312 1 2 chr6 34314523 34314672 -154964882 - L1ME1 LINE L1 0 6178 6027 288 93 23 0 chr6 34314770 34314813 -154964741 - Alu SINE Alu -264 44 1 667 226 147 38 chr6 34314815 34315212 -154964342 - L2 LINE L2 -601 2713 2194 2147 121 0 26 chr6 34315781 34316088 -154963466 - AluJo SINE Alu -13 299 1 2418 92 0 13 chr6 34316129 34316443 -154963111 + AluY SINE Alu 1 310 -1 2311 94 0 0 chr6 34316805 34317092 -154962462 + AluSq SINE Alu 2 288 -25 2092 133 7 3 chr6 34317538 34317831 -154961723 - AluSg SINE Alu -14 296 3 2123 132 17 0 chr6 34317833 34318129 -154961425 - AluSx SINE Alu -11 301 1 342 328 221 5 chr6 34318390 34318838 -154960716 + L2 LINE L2 1795 2339 -975 313 254 172 0 chr6 34318884 34319006 -154960548 + L2 LINE L2 3150 3292 -21 1990 122 16 36 chr6 34319006 34319309 -154960245 - AluSx SINE Alu -15 297 1 2524 67 0 3 chr6 34323304 34323604 -154955950 + AluY SINE Alu 1 299 -12 1929 84 3 133 chr6 34324752 34325097 -154954457 + AluSg SINE Alu 1 300 0 2404 77 0 6 chr6 34325172 34325484 -154954070 + AluSx SINE Alu 1 310 -2 451 323 63 36 chr6 34325632 34325887 -154953667 - L1ME1 LINE L1 -117 6004 5742 233 269 220 29 chr6 34325921 34326271 -154953283 - L1ME1 LINE L1 -773 5373 5209 1685 142 13 33 chr6 34326283 34326586 -154952968 - AluJo SINE Alu -15 297 1 2207 108 0 0 chr6 34326750 34327056 -154952498 + AluSg1 SINE Alu 1 306 -3 1972 110 30 20 chr6 34327372 34327671 -154951883 + AluSx SINE Alu 1 302 -10 2353 75 0 31 chr6 34327707 34328028 -154951526 + AluY SINE Alu 1 311 0 1993 78 0 57 chr6 34328124 34328466 -154951088 + AluSc SINE Alu 1 325 0 2014 111 0 80 chr6 34328482 34328614 -154950940 + AluSx SINE Alu 5 146 -166 2112 118 0 10 chr6 34328614 34328927 -154950627 + AluSx SINE Alu 1 310 -2 2014 111 0 80 chr6 34328927 34329118 -154950436 + AluSx SINE Alu 146 302 -10 304 267 27 59 chr6 34329195 34329374 -154950180 + MIR SINE MIR 7 173 -68 1714 171 7 3 chr6 34329389 34329693 -154949861 + AluJo SINE Alu 5 309 -3 2196 94 13 0 chr6 34329725 34330033 -154949521 + AluSp SINE Alu 1 312 -1 2120 118 0 3 chr6 34330494 34330791 -154948763 - AluSg SINE Alu -14 296 1 964 263 44 22 chr6 34330817 34331137 -154948417 - MER46C DNA MER2_type -11 327 1 2011 141 10 0 chr6 34331159 34331464 -154948090 + AluSq SINE Alu 1 308 -5 356 195 96 188 chr6 34331479 34331626 -154947928 - MIR SINE MIR 0 262 152 762 230 143 4 chr6 34331626 34331856 -154947698 + MIR SINE MIR 1 262 0 356 195 96 188 chr6 34331856 34331990 -154947564 - MIR SINE MIR -110 152 7 567 265 51 25 chr6 34335602 34335798 -154943756 + MIR SINE MIR 49 249 -13 2183 116 0 0 chr6 34336297 34336598 -154942956 - AluSp SINE Alu -12 301 1 486 281 85 35 chr6 34336803 34336841 -154942713 + L2 LINE L2 3104 3139 -174 1441 169 68 0 chr6 34336841 34337107 -154942447 - AluJo SINE Alu -24 288 5 486 281 85 35 chr6 34337107 34337267 -154942287 + L2 LINE L2 3139 3312 -1 214 349 167 0 chr6 34337438 34337564 -154941990 + MIR SINE MIR 52 198 -64 1907 83 79 4 chr6 34337743 34338020 -154941534 + AluSx SINE Alu 1 298 -14 310 306 56 61 chr6 34339732 34339928 -154939626 - L1MDb LINE L1 -5069 1340 1146 358 152 0 23 chr6 34340481 34340686 -154938868 + AluJ SINE Alu 1 266 -36 1866 164 0 3 chr6 34342238 34342531 -154937023 + AluSx SINE Alu 7 298 -14 324 332 88 27 chr6 34342534 34342624 -154936930 - L1MC4a LINE L1 -399 7409 7326 2045 113 10 10 chr6 34342624 34342934 -154936620 - AluSx SINE Alu -2 310 1 324 332 88 27 chr6 34342934 34343138 -154936416 - L1MC4a LINE L1 -482 7326 7097 940 98 0 0 chr6 34343237 34343370 -154936184 - AluSg/x SINE Alu -5 305 173 1969 149 0 0 chr6 34343665 34343961 -154935593 - AluSx SINE Alu -16 296 1 2269 91 0 0 chr6 34344007 34344305 -154935249 + AluSg SINE Alu 1 298 -12 2303 74 24 0 chr6 34344578 34344875 -154934679 + AluSq SINE Alu 1 304 -9 427 327 152 0 chr6 34344922 34345133 -154934421 - L2 LINE L2 -847 2467 2225 2091 113 10 0 chr6 34345202 34345495 -154934059 - AluSx SINE Alu -16 296 1 2237 70 10 10 chr6 34346100 34346422 -154933132 + AluY SINE Alu 1 311 0 1925 132 0 38 chr6 34346468 34346786 -154932768 + AluSx SINE Alu 1 306 -6 2178 82 0 0 chr6 34346822 34347102 -154932452 + AluSq SINE Alu 1 280 -33 396 0 0 0 chr6 34347102 34347146 -154932408 + (CA)n Simple_repeat Simple_repeat 1 44 0 2304 81 3 0 chr6 34347161 34347459 -154932095 + AluY SINE Alu 1 299 -12 2143 95 34 0 chr6 34348096 34348390 -154931164 - AluSx SINE Alu -8 304 1 427 298 51 6 chr6 34349341 34349499 -154930055 - MIR3 SINE MIR -29 179 15 181 283 123 28 chr6 34349752 34349858 -154929696 + L3 LINE CR1 1353 1468 -109 220 289 39 70 chr6 34350567 34350664 -154928890 + L2 LINE L2 3189 3283 -30 1903 160 0 3 chr6 34350664 34350976 -154928578 + AluSx SINE Alu 1 311 -1 220 289 39 70 chr6 34350976 34351006 -154928548 + L2 LINE L2 3283 3312 -1 2172 131 45 70 chr6 34351068 34351511 -154928043 + MSTB1 LTR MaLR 1 432 0 1976 128 0 17 chr6 34351539 34351835 -154927719 + AluSg SINE Alu 1 291 -19 387 0 0 0 chr6 34351837 34351880 -154927674 + (TG)n Simple_repeat Simple_repeat 2 44 0 253 291 55 9 chr6 34352108 34352218 -154927336 - MIR SINE MIR -56 206 92 2274 95 0 0 chr6 34352234 34352538 -154927016 - AluSx SINE Alu -8 304 1 183 100 0 0 chr6 34352612 34352642 -154926912 + (TCC)n Simple_repeat Simple_repeat 2 31 0 283 200 0 29 chr6 34353629 34353699 -154925855 + MIR SINE MIR 189 256 -6 252 245 223 0 chr6 34353962 34354056 -154925498 - L2 LINE L2 0 3313 3199 423 38 0 0 chr6 34354058 34354111 -154925443 + (TG)n Simple_repeat Simple_repeat 2 54 0 189 0 0 0 chr6 34354146 34354167 -154925387 + (TA)n Simple_repeat Simple_repeat 1 21 0 2261 109 0 0 chr6 34355766 34356079 -154923475 - AluSq SINE Alu 0 313 1 804 178 70 6 chr6 34356108 34356265 -154923289 + L1M1 LINE L1 509 675 -6890 387 0 0 0 chr6 34357370 34357413 -154922141 + (TG)n Simple_repeat Simple_repeat 1 43 0 565 246 74 55 chr6 34359915 34360080 -154919474 + MIR SINE MIR 2 162 -100 2351 80 7 0 chr6 34360080 34360380 -154919174 - AluSx SINE Alu -9 303 2 565 246 74 55 chr6 34360380 34360412 -154919142 + MIR SINE MIR 162 192 -70 1661 124 23 12 chr6 34360412 34360670 -154918884 + AluSx SINE Alu 35 295 -17 565 246 74 55 chr6 34360670 34360727 -154918827 + MIR SINE MIR 192 262 0 2213 89 7 0 chr6 34361619 34361911 -154917643 + AluSx SINE Alu 1 294 -18 226 258 68 98 chr6 34366700 34366832 -154912722 - L2 LINE L2 -213 3059 2932 260 356 166 5 chr6 34367017 34367438 -154912116 - L2 LINE L2 -604 2710 2222 2367 61 3 0 chr6 34367594 34367890 -154911664 + AluY SINE Alu 1 297 -14 224 159 23 0 chr6 34367984 34368028 -154911526 - MIR SINE MIR -133 75 31 982 123 0 26 chr6 34370089 34370244 -154909310 + AluJb SINE Alu 152 302 -10 218 301 129 0 chr6 34370246 34370339 -154909215 + MIR SINE MIR 158 262 0 2107 101 40 0 chr6 34370346 34370643 -154908911 - AluSc SINE Alu 0 309 1 372 311 71 36 chr6 34373233 34373381 -154906173 - MIR SINE MIR -3 259 101 2278 92 7 0 chr6 34373381 34373684 -154905870 + AluSx SINE Alu 1 305 -7 372 311 71 36 chr6 34373684 34373731 -154905823 - MIR SINE MIR -161 101 57 1014 140 190 188 chr6 34375748 34375952 -154903602 + L1MD3 LINE L1 7348 7550 -445 2208 95 7 0 chr6 34375952 34376248 -154903306 - AluSp SINE Alu -14 299 2 1014 140 190 188 chr6 34376248 34376276 -154903278 + L1MD3 LINE L1 7550 7576 -419 1589 195 0 20 chr6 34376276 34376579 -154902975 - AluJo SINE Alu -15 297 1 1670 176 21 0 chr6 34376585 34376764 -154902790 - AluJb SINE Alu -10 302 113 230 0 33 0 chr6 34376764 34376794 -154902760 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 1670 176 21 0 chr6 34376794 34376904 -154902650 - AluJb SINE Alu -199 113 7 1014 140 190 188 chr6 34376904 34377222 -154902332 + L1MD3 LINE L1 7580 7994 -1 324 0 0 0 chr6 34377227 34377263 -154902291 + (CA)n Simple_repeat Simple_repeat 2 37 0 256 234 0 0 chr6 34378097 34378144 -154901410 + Charlie1 DNA MER1_type 23 69 -2692 1548 161 74 37 chr6 34378145 34378549 -154901005 + Charlie1 DNA MER1_type 2343 2761 0 2163 99 0 0 chr6 34379971 34380263 -154899291 - AluY SINE Alu -19 292 1 444 19 0 0 chr6 34381335 34381388 -154898166 + (TG)n Simple_repeat Simple_repeat 1 53 0 205 290 10 40 chr6 34382115 34382215 -154897339 + CT-rich Low_complexity Low_complexity 2 98 0 1173 170 0 16 chr6 34383385 34383522 -154896032 + AluSx SINE Alu 1 136 -176 2036 99 3 78 chr6 34383522 34383658 -154895896 + AluSx SINE Alu 1 146 -166 2253 94 0 0 chr6 34383658 34383955 -154895599 + AluSc SINE Alu 1 297 -12 2036 99 3 78 chr6 34383955 34384152 -154895402 + AluSx SINE Alu 146 309 -3 1173 170 0 16 chr6 34384152 34384208 -154895346 + AluSx SINE Alu 136 191 -121 605 56 0 0 chr6 34384208 34384280 -154895274 + AluSc SINE Alu 57 128 -181 2128 113 3 0 chr6 34384280 34384572 -154894982 - AluSp SINE Alu -20 293 1 248 0 0 30 chr6 34384573 34384606 -154894948 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 818 177 0 0 chr6 34384731 34384855 -154894699 + FLAM_C SINE Alu 2 125 -8 1265 141 0 5 chr6 34384861 34385052 -154894502 + AluSq SINE Alu 6 195 -118 1935 94 0 8 chr6 34386689 34386955 -154892599 + AluSx SINE Alu 49 312 0 27 0 0 0 chr6 34387241 34387268 -154892286 + AT_rich Low_complexity Low_complexity 1 27 0 267 246 144 0 chr6 34387307 34387425 -154892129 + L1ME LINE L1 5753 5887 -283 634 223 41 0 chr6 34387426 34387547 -154892007 + AluJo/FLAM SINE Alu 1 126 -176 2161 93 0 0 chr6 34387547 34387866 -154891688 + AluSc SINE Alu 1 319 0 2253 106 0 0 chr6 34387876 34388187 -154891367 + AluSp SINE Alu 1 311 -2 1831 127 57 13 chr6 34388194 34388493 -154891061 + AluJb SINE Alu 1 312 0 246 267 40 10 chr6 34388581 34388682 -154890872 - L1ME2 LINE L1 -215 5949 5846 1394 136 66 73 chr6 34388809 34389111 -154890443 - AluJo SINE Alu 0 312 13 514 133 36 0 chr6 34389111 34389194 -154890360 - AluJ/FLAM SINE Alu -225 87 2 2152 97 0 3 chr6 34389203 34389502 -154890052 - AluSx SINE Alu -14 298 1 311 327 73 0 chr6 34389516 34389626 -154889928 - L1M4 LINE L1 -1667 4479 4362 875 161 0 8 chr6 34392463 34392593 -154886961 - FLAM_C SINE Alu -3 130 2 619 256 52 56 chr6 34392599 34392785 -154886769 + L1ME3A LINE L1 5587 5773 -397 2247 95 0 0 chr6 34392785 34393079 -154886475 + AluSg SINE Alu 1 294 -16 619 256 52 56 chr6 34393079 34393161 -154886393 + L1ME3A LINE L1 5773 5854 -316 1979 140 0 13 chr6 34393161 34393469 -154886085 + AluSx SINE Alu 1 304 -8 1002 179 0 0 chr6 34393469 34393631 -154885923 + AluSg/x SINE Alu 132 293 -17 365 250 81 128 chr6 34393632 34393774 -154885780 + L1ME3A LINE L1 5843 5990 -180 2476 45 0 10 chr6 34393774 34394083 -154885471 - AluY SINE Alu -4 307 2 365 250 81 128 chr6 34394083 34394284 -154885270 + L1ME3A LINE L1 5990 6170 0 303 248 103 8 chr6 34394415 34394532 -154885022 + L2 LINE L2 2994 3121 -192 1327 107 0 15 chr6 34394540 34394736 -154884818 + AluSq SINE Alu 121 313 0 378 186 12 0 chr6 34395004 34395090 -154884464 - HsTC2 DNA Tc2 -1811 87 1 328 342 40 13 chr6 34395241 34395390 -154884164 + L2 LINE L2 3118 3270 -43 2221 102 3 3 chr6 34396548 34396861 -154882693 - AluSq SINE Alu 0 313 1 1938 157 7 10 chr6 34396861 34397030 -154882524 - AluSx SINE Alu -8 304 135 2425 54 3 0 chr6 34397030 34397328 -154882226 - AluY SINE Alu -12 299 1 1938 157 7 10 chr6 34397328 34397463 -154882091 - AluSx SINE Alu -177 135 1 2239 100 3 0 chr6 34397470 34397770 -154881784 - AluSp SINE Alu -12 301 1 490 330 39 11 chr6 34398132 34398311 -154881243 - MIR SINE MIR -32 230 47 2359 68 6 10 chr6 34398521 34398832 -154880722 + AluY SINE Alu 1 310 -1 1919 143 0 7 chr6 34398866 34399160 -154880394 + AluJo SINE Alu 6 297 -15 249 285 109 80 chr6 34400570 34400707 -154878847 + MIR SINE MIR 108 248 -14 617 227 87 13 chr6 34401922 34402072 -154877482 - MIR SINE MIR -73 189 29 299 290 56 19 chr6 34402093 34402200 -154877354 + MIR SINE MIR 17 127 -81 335 273 93 25 chr6 34406844 34407005 -154872549 - L3 LINE CR1 -131 1446 1275 1957 150 0 3 chr6 34407027 34407327 -154872227 - AluSx SINE Alu -13 299 1 222 37 0 0 chr6 34407401 34407428 -154872126 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1708 122 8 4 chr6 34407436 34407690 -154871864 - AluSx SINE Alu -13 299 45 2560 40 0 0 chr6 34407697 34408000 -154871554 - AluY SINE Alu -8 303 1 1782 164 0 22 chr6 34408488 34408799 -154870755 + AluJb SINE Alu 1 304 -8 294 125 0 0 chr6 34409573 34409621 -154869933 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 2482 62 0 0 chr6 34410410 34410719 -154868835 - AluSc SINE Alu 0 309 1 2116 104 3 10 chr6 34410829 34411137 -154868417 - AluSx SINE Alu -6 306 1 990 80 0 15 chr6 34411137 34411274 -154868280 - AluSq/x SINE Alu -177 135 1 359 289 98 41 chr6 34412209 34412475 -154867079 + L2 LINE L2 2473 2753 -561 293 262 272 0 chr6 34412531 34412634 -154866920 + L2 LINE L2 3179 3309 -4 2236 89 3 0 chr6 34413152 34413454 -154866100 - AluSx SINE Alu -9 303 1 305 360 143 0 chr6 34413457 34413604 -154865950 + L3 LINE CR1 587 754 -823 2007 94 39 3 chr6 34414237 34414523 -154865031 - AluSx SINE Alu -16 296 1 245 391 103 0 chr6 34414712 34414955 -154864599 + L2 LINE L2 2042 2309 -1005 520 207 291 6 chr6 34415030 34415209 -154864345 - MIR SINE MIR -21 241 12 384 294 84 70 chr6 34415323 34415680 -154863874 - L1MC4a LINE L1 -1764 6044 5683 1944 107 18 7 chr6 34416861 34417142 -154862412 - AluSx SINE Alu -21 291 8 531 243 137 44 chr6 34417463 34417689 -154861865 + L1ME3A LINE L1 5896 6142 -28 693 171 51 0 chr6 34417728 34417845 -154861709 + FLAM_A SINE Alu 4 126 -7 2070 94 13 20 chr6 34418472 34418771 -154860783 - AluSg SINE Alu -11 299 3 2074 112 10 0 chr6 34418773 34419069 -154860485 - AluSp SINE Alu -14 299 1 2263 96 3 0 chr6 34419303 34419606 -154859948 - AluSp SINE Alu -8 305 2 2183 100 0 0 chr6 34419946 34420237 -154859317 - AluSx SINE Alu -21 291 1 2213 91 0 3 chr6 34420477 34420773 -154858781 + AluSg SINE Alu 1 295 -15 1674 171 32 0 chr6 34421546 34421827 -154857727 - AluJb SINE Alu -22 290 1 218 213 33 0 chr6 34423532 34423593 -154855961 - MIR SINE MIR -120 142 80 2255 105 0 0 chr6 34425782 34426086 -154853468 + AluSx SINE Alu 1 304 -8 200 356 0 0 chr6 34426087 34426146 -154853408 - MIR SINE MIR -105 103 45 604 262 219 0 chr6 34429488 34429698 -154849856 + MIR SINE MIR 3 258 -4 723 107 18 27 chr6 34429814 34429926 -154849628 - HY1 scRNA scRNA -1 111 1 711 116 0 78 chr6 34429968 34430097 -154849457 - AluSg/x SINE Alu -5 304 186 1023 130 56 6 chr6 34430109 34430270 -154849284 + AluSg/x SINE Alu 134 302 -10 687 142 0 9 chr6 34430277 34430383 -154849171 - FLAM_C SINE Alu -38 105 1 2258 93 3 0 chr6 34431499 34431799 -154847755 - AluSp SINE Alu -12 301 1 2413 74 0 0 chr6 34436061 34436359 -154843195 - AluY SINE Alu -13 298 1 232 381 42 36 chr6 34437614 34437782 -154841772 - L2 LINE L2 0 3272 3104 1901 132 21 0 chr6 34437984 34438273 -154841281 + AluJb SINE Alu 1 295 -17 292 242 172 0 chr6 34438292 34438420 -154841134 + MIR SINE MIR 113 262 0 267 149 0 0 chr6 34438571 34438626 -154840928 - AluJb SINE Alu 0 302 254 929 172 65 6 chr6 34438649 34438818 -154840736 - AluJb SINE Alu -133 179 1 2064 74 57 7 chr6 34438959 34439242 -154840312 - AluSg1 SINE Alu -12 297 1 1457 161 119 0 chr6 34439272 34439533 -154840021 + AluJo SINE Alu 1 292 -20 327 25 0 0 chr6 34440858 34440898 -154838656 + (TG)n Simple_repeat Simple_repeat 2 41 0 2232 112 0 0 chr6 34441657 34441962 -154837592 - AluSx SINE Alu -7 305 1 2248 100 0 10 chr6 34442524 34442833 -154836721 - AluSq SINE Alu -1 312 7 2049 117 10 7 chr6 34443099 34443399 -154836155 - AluSx SINE Alu -11 301 1 2065 134 0 0 chr6 34444903 34445202 -154834352 + AluSx SINE Alu 1 299 -13 215 337 74 0 chr6 34445204 34445299 -154834255 - L2 LINE L2 -13 3300 3199 1599 84 18 4 chr6 34446016 34446146 -154833408 + AluSq SINE Alu 1 137 -176 2534 71 0 0 chr6 34446146 34446457 -154833097 + AluY SINE Alu 1 311 0 1599 84 18 4 chr6 34446457 34446551 -154833003 + AluSq SINE Alu 137 228 -85 2206 115 7 0 chr6 34446932 34447236 -154832318 + AluSx SINE Alu 1 306 -6 2318 81 3 7 chr6 34449471 34449779 -154829775 - AluSc SINE Alu -2 307 1 1305 166 78 68 chr6 34449782 34450078 -154829476 - AluJo SINE Alu -13 299 1 258 302 35 12 chr6 34450498 34450584 -154828970 - MIR3 SINE MIR -18 190 103 2187 82 6 32 chr6 34454304 34454619 -154824935 - AluSg SINE Alu -3 307 1 568 268 89 21 chr6 34455098 34455333 -154824221 + MLT1H1 LTR MaLR 254 504 -51 722 184 35 21 chr6 34462170 34462311 -154817243 - FLAM_C SINE Alu 0 143 1 1992 108 7 3 chr6 34462899 34463185 -154816369 - AluSx SINE Alu -25 287 1 213 132 0 0 chr6 34463621 34463659 -154815895 + (CTG)n Simple_repeat Simple_repeat 2 39 0 751 148 0 56 chr6 34464344 34464370 -154815184 - AluJo SINE Alu -178 134 108 2053 128 3 0 chr6 34464370 34464658 -154814896 - AluSg SINE Alu -21 289 1 751 148 0 56 chr6 34464658 34464773 -154814781 - AluJo SINE Alu -204 108 1 612 200 18 0 chr6 34465609 34465719 -154813835 - FLAM_A SINE Alu -19 123 12 1597 176 20 20 chr6 34466647 34466949 -154812605 - AluJo SINE Alu -10 302 1 2264 61 7 14 chr6 34468122 34468416 -154811138 + AluSc SINE Alu 1 292 -17 2223 96 3 3 chr6 34469660 34469961 -154809593 + AluSp SINE Alu 9 309 -4 243 146 0 0 chr6 34472273 34472314 -154807240 + (CCG)n Simple_repeat Simple_repeat 2 42 0 1991 78 89 0 chr6 34473569 34473850 -154805704 + AluSg SINE Alu 1 306 -4 2376 76 10 0 chr6 34473854 34474158 -154805396 + AluSp SINE Alu 5 311 -2 2372 91 3 0 chr6 34474224 34474532 -154805022 + AluSc SINE Alu 1 309 0 823 141 23 0 chr6 34474545 34474673 -154804881 + FLAM_C SINE Alu 4 134 -9 346 326 7 21 chr6 34474943 34475084 -154804470 + L2 LINE L2 1687 1825 -1489 2347 90 3 3 chr6 34475085 34475396 -154804158 - AluSq SINE Alu -2 311 1 2141 94 6 31 chr6 34475455 34475775 -154803779 - AluSp SINE Alu -1 312 1 215 240 133 0 chr6 34475837 34475912 -154803642 - MIR SINE MIR -113 149 65 2215 91 0 3 chr6 34479074 34479370 -154800184 - AluSc SINE Alu -14 295 1 453 265 62 138 chr6 34479488 34479645 -154799909 - L2 LINE L2 0 3313 3145 2386 78 0 0 chr6 34479645 34479951 -154799603 + AluSg SINE Alu 1 306 -4 453 265 62 138 chr6 34479951 34480025 -154799529 - L2 LINE L2 -168 3145 3067 2215 113 3 0 chr6 34480025 34480336 -154799218 - AluSx SINE Alu 0 312 1 2103 98 0 0 chr6 34480336 34480612 -154798942 - AluSg SINE Alu -21 289 14 453 265 62 138 chr6 34480336 34480645 -154798909 - L2 LINE L2 -246 3067 3074 1084 170 0 0 chr6 34480645 34480810 -154798744 + FRAM SINE Alu 1 165 -1 453 265 62 138 chr6 34480810 34480868 -154798686 - L2 LINE L2 -238 3075 3014 2145 93 3 17 chr6 34480868 34481169 -154798385 - AluSg SINE Alu -13 297 1 2130 122 0 0 chr6 34481484 34481779 -154797775 - AluSc SINE Alu -14 295 1 210 71 0 0 chr6 34481906 34481934 -154797620 + (GGA)n Simple_repeat Simple_repeat 3 30 0 2313 93 0 0 chr6 34482471 34482782 -154796772 - AluY SINE Alu 0 311 1 1523 266 106 22 chr6 34482791 34483411 -154796143 - MER21B LTR ERV1 -60 803 98 277 194 42 28 chr6 34483466 34483528 -154796026 - MER21B LTR ERV1 -778 85 20 345 47 0 0 chr6 34483528 34483571 -154795983 + (CA)n Simple_repeat Simple_repeat 2 44 0 1799 149 3 3 chr6 34483589 34483871 -154795683 - AluJb SINE Alu -30 282 1 1785 172 23 0 chr6 34483871 34484174 -154795380 - AluJo SINE Alu -2 310 1 2303 87 0 0 chr6 34484188 34484487 -154795067 - AluY SINE Alu -12 299 1 2212 58 7 20 chr6 34484487 34484781 -154794773 - AluY SINE Alu -19 292 3 23 0 0 0 chr6 34484785 34484808 -154794746 + AT_rich Low_complexity Low_complexity 1 23 0 519 191 275 39 chr6 34484820 34484998 -154794556 - L2 LINE L2 -337 2977 2758 2069 90 11 0 chr6 34485135 34485413 -154794141 + AluSp SINE Alu 1 281 -32 329 194 0 42 chr6 34485535 34485607 -154793947 + LTR48B LTR ERV1 1 69 -575 744 179 122 0 chr6 34485623 34485779 -154793775 + LTR48 LTR ERV1 175 349 -438 968 181 6 0 chr6 34485779 34485939 -154793615 - FRAM SINE Alu -1 165 5 2163 102 0 7 chr6 34485944 34486248 -154793306 - AluSx SINE Alu -10 302 1 944 191 0 0 chr6 34486259 34486427 -154793127 - AluJo/FRAM SINE Alu -8 304 137 1358 99 241 0 chr6 34486429 34486661 -154792893 - AluSg1 SINE Alu -15 294 7 2062 116 0 10 chr6 34486664 34486965 -154792589 - AluSc SINE Alu -11 298 1 24 0 0 0 chr6 34486967 34486991 -154792563 + AT_rich Low_complexity Low_complexity 1 24 0 773 190 70 0 chr6 34487023 34487181 -154792373 - LTR26E LTR ERV1 -453 169 1 2107 106 7 0 chr6 34487241 34487533 -154792021 - AluSx SINE Alu -18 294 1 1963 118 0 0 chr6 34487716 34488020 -154791534 - AluY SINE Alu 0 307 4 2050 105 35 0 chr6 34488120 34488405 -154791149 - AluSg SINE Alu -15 295 1 287 377 0 11 chr6 34488555 34488708 -154790846 + GA-rich Low_complexity Low_complexity 2 154 -20 1717 126 0 0 chr6 34488708 34488947 -154790607 + AluSx SINE Alu 1 239 -73 287 377 0 11 chr6 34488947 34488968 -154790586 + GA-rich Low_complexity Low_complexity 154 174 0 229 204 41 0 chr6 34488972 34489021 -154790533 + L2 LINE L2 3263 3313 0 526 372 75 10 chr6 34489386 34489770 -154789784 - L2 LINE L2 -743 2571 2163 566 214 0 53 chr6 34489803 34489934 -154789620 + FLAM_A SINE Alu 13 136 -6 2258 99 3 0 chr6 34489965 34490267 -154789287 + AluSq SINE Alu 1 303 -10 1897 210 12 31 chr6 34490528 34490798 -154788756 + L1ME2 LINE L1 5687 5946 -218 1690 156 0 55 chr6 34490798 34490926 -154788628 + AluJo SINE Alu 1 135 -177 2061 110 0 42 chr6 34490926 34491235 -154788319 - AluSg SINE Alu -14 296 1 1690 156 0 55 chr6 34491235 34491414 -154788140 + AluJo SINE Alu 135 291 -21 1897 210 12 31 chr6 34491414 34491629 -154787925 + L1ME2 LINE L1 5946 6163 -1 2346 70 0 7 chr6 34491639 34491941 -154787613 + AluY SINE Alu 1 300 -11 2204 98 26 0 chr6 34492003 34492308 -154787246 + AluSq SINE Alu 1 313 0 2241 92 3 7 chr6 34492702 34493007 -154786547 + AluSx SINE Alu 1 304 -8 2264 100 0 0 chr6 34493122 34493421 -154786133 + AluSg SINE Alu 5 303 -7 2221 93 7 0 chr6 34493898 34494198 -154785356 - AluSq SINE Alu -11 302 1 1586 170 0 55 chr6 34494631 34494943 -154784611 + AluJo SINE Alu 1 295 -17 1874 136 7 0 chr6 34495148 34495455 -154784099 + AluSx SINE Alu 1 309 0 2206 75 0 3 chr6 34495477 34495787 -154783767 + AluSg SINE Alu 1 309 0 1082 176 22 22 chr6 34495794 34496016 -154783538 + AluJo SINE Alu 68 289 -23 1071 136 25 5 chr6 34496180 34496379 -154783175 + Tigger1 DNA MER2_type 24 226 -2192 1300 132 0 45 chr6 34496379 34496540 -154783014 - AluJo SINE Alu -18 294 127 1857 134 27 0 chr6 34496540 34496832 -154782722 - AluSp SINE Alu -11 302 3 1300 132 0 45 chr6 34496832 34496864 -154782690 - AluJo SINE Alu -185 127 110 1757 167 34 0 chr6 34496864 34497158 -154782396 + AluJb SINE Alu 1 304 -8 1300 132 0 45 chr6 34497158 34497183 -154782371 - AluJo SINE Alu -202 110 85 586 250 32 0 chr6 34497190 34497314 -154782240 - FAM SINE Alu -57 128 1 473 103 47 103 chr6 34497314 34497371 -154782183 + Tigger1 DNA MER2_type 1166 1217 -1201 2074 113 0 0 chr6 34497371 34497688 -154781866 + AluSx SINE Alu 1 317 0 473 103 47 103 chr6 34497688 34497736 -154781818 + Tigger1 DNA MER2_type 1217 1266 -1152 1538 207 0 37 chr6 34497740 34497976 -154781578 - AluJb SINE Alu 0 312 90 2311 95 0 0 chr6 34497976 34498281 -154781273 - AluY SINE Alu -6 305 1 1538 207 0 37 chr6 34498281 34498368 -154781186 - AluJb SINE Alu -222 90 1 1684 181 0 3 chr6 34498420 34498712 -154780842 - AluJo SINE Alu -21 291 1 1439 114 0 30 chr6 34498712 34498848 -154780706 + Tigger1 DNA MER2_type 1248 1376 -1042 2426 77 3 0 chr6 34498848 34499160 -154780394 - AluSp SINE Alu 0 313 1 1439 114 0 30 chr6 34499160 34499260 -154780294 + Tigger1 DNA MER2_type 1376 1477 -941 1663 149 46 7 chr6 34499261 34499543 -154780011 + AluJb SINE Alu 2 294 -18 2086 100 0 0 chr6 34499547 34499828 -154779726 + AluSx SINE Alu 27 307 -5 459 0 0 0 chr6 34499837 34499888 -154779666 + (CA)n Simple_repeat Simple_repeat 2 52 0 2026 121 3 7 chr6 34500785 34500951 -154778603 - AluSx SINE Alu -12 300 134 2271 101 0 0 chr6 34500951 34501247 -154778307 - AluSx SINE Alu -16 296 1 2026 121 3 7 chr6 34501247 34501378 -154778176 - AluSx SINE Alu -178 134 4 1953 138 7 0 chr6 34501392 34501681 -154777873 - AluSx SINE Alu -21 291 1 470 168 257 0 chr6 34501763 34501876 -154777678 + MER5A DNA MER1_type 48 189 0 475 83 0 0 chr6 34502050 34502110 -154777444 + AluS SINE Alu 34 93 -219 1641 135 40 0 chr6 34502111 34502363 -154777191 + AluSx SINE Alu 47 308 -4 2372 66 0 7 chr6 34502574 34502875 -154776679 - AluSg SINE Alu -11 299 1 37 0 0 0 chr6 34504307 34504344 -154775210 + AT_rich Low_complexity Low_complexity 1 37 0 453 36 0 0 chr6 34504764 34504819 -154774735 + (TC)n Simple_repeat Simple_repeat 2 56 0 667 219 8 0 chr6 34504819 34504942 -154774612 - FLAM_A SINE Alu -8 125 2 245 210 24 8 chr6 34504951 34505075 -154774479 + CT-rich Low_complexity Low_complexity 2 127 0 227 275 184 9 chr6 34505900 34506009 -154773545 + MIR SINE MIR 21 148 -60 199 342 144 5 chr6 34506048 34506235 -154773319 - MIR SINE MIR -30 232 20 1604 183 52 0 chr6 34507916 34508205 -154771349 - AluJo SINE Alu -8 304 1 2091 128 0 0 chr6 34508405 34508701 -154770853 - AluSx SINE Alu -16 296 1 2067 140 0 0 chr6 34508709 34509016 -154770538 - AluSq SINE Alu -6 307 1 499 146 62 0 chr6 34509050 34509146 -154770408 + MIR SINE MIR 29 130 -132 1853 167 0 0 chr6 34509175 34509468 -154770086 + AluJb SINE Alu 1 293 -19 2267 100 3 3 chr6 34509629 34509940 -154769614 - AluSx SINE Alu -1 311 1 339 271 186 0 chr6 34510432 34510561 -154768993 + MIR3 SINE MIR 32 184 -24 22 35 0 0 chr6 34512172 34512201 -154767353 + GC_rich Low_complexity Low_complexity 1 29 0 1835 161 0 16 chr6 34513600 34513905 -154765649 - AluJo SINE Alu -8 304 5 779 168 0 44 chr6 34514067 34514204 -154765350 - FLAM_C SINE Alu -1 132 2 229 228 63 51 chr6 34514586 34514665 -154764889 + LTR42 LTR ERVL 85 164 -331 217 0 61 0 chr6 34515161 34515194 -154764360 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 180 227 0 23 chr6 34516800 34516844 -154762710 - L2 LINE L2 -7 3265 3223 222 37 0 0 chr6 34517003 34517030 -154762524 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 183 191 0 48 chr6 34517031 34517073 -154762481 - L2 LINE L2 -13 3259 3220 264 321 0 22 chr6 34517073 34517210 -154762344 + CT-rich Low_complexity Low_complexity 2 135 0 24 0 0 0 chr6 34519106 34519130 -154760424 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr6 34520464 34520489 -154759065 + (GA)n Simple_repeat Simple_repeat 2 26 0 286 242 34 56 chr6 34520560 34520738 -154758816 + (CAGAGA)n Simple_repeat Simple_repeat 2 175 0 506 232 16 0 chr6 34521412 34521537 -154758017 - MER94 DNA DNA -7 127 1 2082 125 3 0 chr6 34521834 34522131 -154757423 + AluSx SINE Alu 1 298 -14 1511 218 85 22 chr6 34522150 34522599 -154756955 - L1ME3 LINE L1 -2 6160 5684 2689 114 12 7 chr6 34522974 34523373 -154756181 - MER39 LTR ERV1 0 707 306 2132 101 7 13 chr6 34523373 34523680 -154755874 - AluSx SINE Alu -7 305 1 1923 139 0 10 chr6 34523882 34524213 -154755341 + AluY SINE Alu 1 311 0 325 263 21 0 chr6 34524666 34524761 -154754793 + (CCCCAA)n Simple_repeat Simple_repeat 3 99 0 1021 251 107 101 chr6 34524943 34525490 -154754064 - L2 LINE L2 0 3313 2771 287 49 24 0 chr6 34525490 34525531 -154754023 + (TG)n Simple_repeat Simple_repeat 2 43 0 1021 251 107 101 chr6 34525531 34525601 -154753953 - L2 LINE L2 -542 2771 2703 1535 165 16 76 chr6 34525601 34525868 -154753686 - AluJo SINE Alu -6 296 49 1965 122 14 0 chr6 34525868 34526164 -154753390 - AluSq SINE Alu -13 300 1 1535 165 16 76 chr6 34526164 34526211 -154753343 - AluJo SINE Alu -253 49 1 2158 113 10 0 chr6 34526216 34526517 -154753037 - AluSx SINE Alu -8 304 1 1979 138 17 0 chr6 34526517 34526814 -154752740 - AluSx SINE Alu -10 302 1 832 208 13 0 chr6 34526817 34526971 -154752583 - AluJo SINE Alu -6 296 141 2142 113 3 0 chr6 34526981 34527274 -154752280 - AluSg SINE Alu -16 294 1 1021 251 107 101 chr6 34527274 34527564 -154751990 - L2 LINE L2 -622 2691 2310 195 347 126 0 chr6 34527877 34527972 -154751582 - MIR3 SINE MIR -13 195 89 860 144 0 8 chr6 34528059 34528191 -154751363 - AluJo SINE Alu -171 131 1 1763 175 0 14 chr6 34528226 34528523 -154751031 - AluJo SINE Alu -19 293 1 2137 114 0 0 chr6 34529062 34529351 -154750203 + AluSq SINE Alu 1 289 -24 30 0 0 0 chr6 34529351 34529381 -154750173 + AT_rich Low_complexity Low_complexity 1 30 0 211 167 24 0 chr6 34529556 34529598 -154749956 - MIR SINE MIR -128 134 92 268 213 7 3 chr6 34529644 34529704 -154749850 - MER57A LTR ERV1 -55 348 301 2276 88 0 0 chr6 34530027 34530324 -154749230 - AluSx SINE Alu -11 301 5 22 0 0 0 chr6 34531282 34531304 -154748250 + GC_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr6 34531615 34531642 -154747912 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr6 34531695 34531717 -154747837 + GC_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr6 34533279 34533323 -154746231 + GC_rich Low_complexity Low_complexity 1 44 0 24 32 0 0 chr6 34535954 34535985 -154743569 + GC_rich Low_complexity Low_complexity 1 31 0 219 146 0 0 chr6 34535992 34536033 -154743521 + (CGG)n Simple_repeat Simple_repeat 3 43 0 21 0 0 0 chr6 34536072 34536093 -154743461 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 34536127 34536150 -154743404 + GC_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr6 34536411 34536445 -154743109 + GC_rich Low_complexity Low_complexity 1 34 0 220 328 109 16 chr6 34537495 34537687 -154741867 - L2 LINE L2 0 3313 3104 582 145 35 35 chr6 34537880 34538025 -154741529 - LTR23 LTR ERV1 0 437 293 794 185 15 0 chr6 34538032 34538162 -154741392 - FLAM_C SINE Alu -1 132 1 251 156 0 0 chr6 34538227 34538272 -154741282 + MER66A LTR ERV1 290 334 -144 22 35 0 0 chr6 34538281 34538310 -154741244 + AT_rich Low_complexity Low_complexity 1 29 0 1201 169 88 15 chr6 34538321 34538594 -154740960 - LTR23 LTR ERV1 -144 293 1 363 100 0 146 chr6 34538655 34538729 -154740825 - MER44D DNA MER2_type -2002 485 375 1412 116 160 0 chr6 34538729 34538846 -154740708 + AluSx SINE Alu 1 98 -214 180 0 0 0 chr6 34538846 34538866 -154740688 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1412 116 160 0 chr6 34538866 34538998 -154740556 + AluSx SINE Alu 98 290 -22 363 100 0 146 chr6 34538998 34539033 -154740521 - MER44D DNA MER2_type -2112 375 337 1417 125 76 40 chr6 34539062 34539094 -154740460 - L1MB3 LINE L1 -28 6155 6126 2128 104 3 23 chr6 34539094 34539229 -154740325 + AluSx SINE Alu 1 137 -175 2111 105 10 10 chr6 34539229 34539534 -154740020 + AluSq SINE Alu 1 305 -8 2128 104 3 23 chr6 34539534 34539707 -154739847 + AluSx SINE Alu 137 303 -9 1417 125 76 40 chr6 34539707 34540002 -154739552 - L1MB3 LINE L1 -57 6126 5816 639 215 7 23 chr6 34540047 34540060 -154739494 - L1MB3 LINE L1 -325 5829 5817 1420 171 49 31 chr6 34540060 34540346 -154739208 + AluJo SINE Alu 1 291 -21 639 215 7 23 chr6 34540346 34540526 -154739028 - L1MB3 LINE L1 -337 5817 5654 2085 104 0 17 chr6 34541419 34541716 -154737838 - AluSx SINE Alu -20 292 1 1011 231 78 106 chr6 34542039 34542431 -154737123 - L1MC5 LINE L1 -37 7924 7522 2290 81 3 10 chr6 34542431 34542729 -154736825 + AluSp SINE Alu 1 296 -17 1011 231 78 106 chr6 34542729 34542772 -154736782 - L1MC5 LINE L1 -439 7522 7479 2178 107 0 10 chr6 34542772 34543092 -154736462 - AluSg SINE Alu 0 310 1 1011 231 78 106 chr6 34543092 34543127 -154736427 - L1MC5 LINE L1 -482 7479 7445 1971 118 31 0 chr6 34543127 34543415 -154736139 + AluSq SINE Alu 3 299 -14 1011 231 78 106 chr6 34543415 34543573 -154735981 - L1MC5 LINE L1 -516 7445 7312 335 306 20 48 chr6 34543576 34543723 -154735831 - L1MD3 LINE L1 -437 7558 7416 239 280 93 47 chr6 34543760 34543910 -154735644 - L1ME3A LINE L1 -220 5950 5794 444 161 0 0 chr6 34544106 34544187 -154735367 + GA-rich Low_complexity Low_complexity 2 82 0 392 338 69 0 chr6 34546108 34546253 -154733301 - L2 LINE L2 0 3272 3118 258 286 18 45 chr6 34546318 34546430 -154733124 - MIR SINE MIR -144 118 10 204 333 35 11 chr6 34546427 34546514 -154733040 - L2 LINE L2 -163 3109 3021 * 581 258 88 88 chr6 34547259 34547573 -154731981 - L1MC5 LINE L1 -915 7046 6730 1884 83 0 0 chr6 34547573 34547814 -154731740 - AluSg SINE Alu -14 296 56 581 258 88 88 chr6 34547814 34547930 -154731624 - L1MC5 LINE L1 -1230 6731 6616 1013 198 12 0 chr6 34547931 34548103 -154731451 - FAM SINE Alu -1 174 1 2328 60 10 3 chr6 34548181 34548480 -154731074 - AluY SINE Alu -10 301 1 546 221 0 18 chr6 34548481 34548594 -154730960 - MIR SINE MIR -111 151 41 874 208 33 6 chr6 34549431 34549614 -154729940 + MER53 DNA DNA 1 188 -1 380 315 204 0 chr6 34549908 34550070 -154729484 + MER91A DNA MER1_type 2 196 0 257 220 0 17 chr6 34551212 34551271 -154728283 + C-rich Low_complexity Low_complexity 4 61 0 458 263 66 15 chr6 34551280 34551417 -154728137 + MIR SINE MIR 21 164 -98 225 342 33 72 chr6 34551420 34551540 -154728014 + L2 LINE L2 1578 1701 -1613 2427 86 0 3 chr6 34551540 34551854 -154727700 - AluSq SINE Alu 0 313 1 225 342 33 72 chr6 34551854 34552066 -154727488 + L2 LINE L2 1701 1897 -1417 731 243 35 0 chr6 34553107 34553276 -154726278 - MER5A DNA MER1_type 0 189 15 1999 117 10 3 chr6 34554081 34554372 -154725182 + AluSq SINE Alu 4 296 -17 264 263 179 0 chr6 34556824 34556919 -154722635 + L1ME3A LINE L1 6027 6138 -32 1314 159 45 0 chr6 34556989 34557209 -154722345 - AluJo SINE Alu -82 230 1 1262 120 0 5 chr6 34557234 34557418 -154722136 + AluSg/x SINE Alu 127 309 -1 370 328 16 68 chr6 34558041 34558291 -154721263 + MIR SINE MIR 2 238 -24 336 256 150 44 chr6 34558233 34558413 -154721141 - MIR SINE MIR 0 262 64 * 401 263 132 0 chr6 34559236 34559350 -154720204 - MIR3 SINE MIR -37 171 43 206 229 238 9 chr6 34559376 34559481 -154720073 - L2 LINE L2 -3 3310 3182 1963 75 3 129 chr6 34559550 34559883 -154719671 - AluSg SINE Alu -9 291 1 260 305 11 0 chr6 34559902 34559997 -154719557 + L1ME4a LINE L1 5955 6050 -71 876 168 0 0 chr6 34560027 34560158 -154719396 - FLAM_C SINE Alu 0 133 3 2098 102 0 40 chr6 34560193 34560496 -154719058 + AluSx SINE Alu 1 291 -21 2184 87 10 0 chr6 34560501 34560790 -154718764 + AluSg SINE Alu 1 292 -18 288 365 10 0 chr6 34560877 34560981 -154718573 + MIR SINE MIR 49 153 -109 974 155 0 13 chr6 34560983 34561138 -154718416 + FRAM SINE Alu 5 157 -19 1830 173 0 0 chr6 34561140 34561460 -154718094 + AluJo SINE Alu 1 320 0 449 185 0 0 chr6 34563209 34563290 -154716264 + MIR SINE MIR 113 193 -69 285 294 92 17 chr6 34563518 34563637 -154715917 - L2 LINE L2 0 3313 3186 2487 38 0 0 chr6 34563678 34563970 -154715584 - AluY SINE Alu -19 292 1 322 286 36 18 chr6 34564203 34564315 -154715239 - MER91A DNA MER1_type -19 177 64 306 328 104 0 chr6 34564526 34564709 -154714845 - MIR3 SINE MIR 0 208 7 1446 173 7 75 chr6 34564840 34565168 -154714386 - AluJo SINE Alu 0 316 9 568 252 7 14 chr6 34565171 34565314 -154714240 + MIR SINE MIR 121 262 0 2198 86 21 0 chr6 34565556 34565846 -154713708 + AluSx SINE Alu 4 299 -13 200 171 0 0 chr6 34565855 34565890 -154713664 - L2 LINE L2 -17 3255 3221 1592 188 34 7 chr6 34565919 34566217 -154713337 - AluJb SINE Alu 0 312 7 1784 138 0 49 chr6 34566278 34566582 -154712972 + AluSg SINE Alu 1 289 -21 796 251 40 52 chr6 34566629 34566762 -154712792 - L1MC5 LINE L1 -30 7931 7798 2258 95 0 3 chr6 34566762 34567057 -154712497 - AluSq SINE Alu -16 297 4 796 251 40 52 chr6 34567057 34567250 -154712304 - L1MC5 LINE L1 -163 7798 7609 362 219 219 0 chr6 34568428 34568533 -154711021 + MER45A DNA AcHobo 47 174 -4 2223 83 10 13 chr6 34569296 34569608 -154709946 + AluSx SINE Alu 1 311 -1 372 298 139 29 chr6 34569689 34569887 -154709667 - MIR SINE MIR -34 228 15 2219 73 27 3 chr6 34570147 34570448 -154709106 + AluSx SINE Alu 1 308 -4 209 276 0 26 chr6 34571156 34571232 -154708322 + CT-rich Low_complexity Low_complexity 2 75 0 696 263 13 36 chr6 34571861 34572085 -154707469 - L2 LINE L2 -3 3310 3092 637 279 76 0 chr6 34572692 34572864 -154706690 - MER91A DNA MER1_type 0 196 12 1802 160 3 22 chr6 34574627 34574939 -154704615 - AluJb SINE Alu -6 306 1 21 0 0 0 chr6 34575011 34575032 -154704522 + AT_rich Low_complexity Low_complexity 1 21 0 2304 101 0 0 chr6 34575032 34575339 -154704215 - AluSx SINE Alu 0 312 6 803 193 0 7 chr6 34575343 34575483 -154704071 - AluJo SINE Alu -173 139 1 2038 124 3 0 chr6 34575509 34575800 -154703754 + AluSg SINE Alu 1 292 -18 1253 218 66 3 chr6 34576140 34576429 -154703125 + AluJo SINE Alu 1 307 -5 369 213 88 17 chr6 34576463 34576567 -154702987 + MER5A DNA MER1_type 69 186 -3 2235 105 0 0 chr6 34576693 34576988 -154702566 + AluSg SINE Alu 1 295 -15 241 209 0 0 chr6 34577068 34577111 -154702443 + MER66A LTR ERV1 290 332 -146 2228 90 0 7 chr6 34577113 34577413 -154702141 - AluSx SINE Alu -14 298 1 34 24 0 0 chr6 34577417 34577458 -154702096 + AT_rich Low_complexity Low_complexity 1 41 0 2064 128 0 3 chr6 34577468 34577764 -154701790 + AluSx SINE Alu 1 295 -17 1909 149 7 0 chr6 34577817 34578113 -154701441 + AluSx SINE Alu 1 298 -14 561 233 15 53 chr6 34578128 34578261 -154701293 - FLAM_A SINE Alu -5 128 1 5272 72 35 55 chr6 34578293 34579152 -154700402 + SVA Other Other 25 866 -520 1203 71 3 45 chr6 34579181 34579530 -154700024 + SVA Other Other 635 866 -592 6756 58 5 43 chr6 34579543 34580535 -154699019 + SVA Other Other 433 1386 0 615 209 26 40 chr6 34580542 34580735 -154698819 - LTR24B LTR ERV1 -40 595 374 4412 127 51 32 chr6 34580736 34581935 -154697619 - pTR5 LTR ERV1 -171 2267 743 1704 108 140 35 chr6 34581936 34582278 -154697276 - LTR24B LTR ERV1 -195 381 4 1812 128 3 35 chr6 34582609 34582899 -154696655 - AluJb SINE Alu -14 298 18 233 29 29 0 chr6 34582978 34583012 -154696542 + (CAA)n Simple_repeat Simple_repeat 1 35 0 1531 99 0 22 chr6 34583066 34583288 -154696266 - AluSg/x SINE Alu -15 295 79 1396 98 0 0 chr6 34583288 34583471 -154696083 + AluSc SINE Alu 115 297 -12 1052 76 0 0 chr6 34583471 34583603 -154695951 + AluSp SINE Alu 1 132 -181 2181 79 16 7 chr6 34583606 34583909 -154695645 + AluSq SINE Alu 1 306 -7 1557 188 3 26 chr6 34583912 34584221 -154695333 + AluJb SINE Alu 1 302 -10 2203 93 3 10 chr6 34584265 34584578 -154694976 + AluY SINE Alu 1 311 0 2205 97 0 7 chr6 34584688 34584988 -154694566 - AluSx SINE Alu -10 302 5 1731 159 4 0 chr6 34584998 34585275 -154694279 - AluJo SINE Alu -22 290 13 283 348 22 0 chr6 34585283 34585464 -154694090 + L1MC4 LINE L1 7732 7916 -126 1405 181 51 14 chr6 34585488 34585780 -154693774 - AluJo SINE Alu -9 303 1 180 0 0 0 chr6 34586193 34586213 -154693341 + (A)n Simple_repeat Simple_repeat 1 20 0 437 176 0 24 chr6 34586220 34586305 -154693249 + AluJb SINE Alu 198 280 -32 2099 108 3 3 chr6 34586500 34586795 -154692759 + AluSg SINE Alu 1 295 -15 300 267 137 7 chr6 34586807 34586953 -154692601 - L1MEd LINE L1 -5004 1115 951 937 126 0 15 chr6 34586966 34587101 -154692453 - FLAM_C SINE Alu 0 133 1 1985 146 0 0 chr6 34587262 34587557 -154691997 - AluSx SINE Alu -17 295 1 448 102 0 0 chr6 34587768 34587827 -154691727 - AluSq/x SINE Alu -192 120 62 1459 256 35 14 chr6 34587827 34588253 -154691301 - L2 LINE L2 -466 2848 2414 2486 49 10 0 chr6 34588505 34588811 -154690743 + AluY SINE Alu 1 309 -2 618 241 0 0 chr6 34589010 34589126 -154690428 + FLAM_A SINE Alu 1 116 -17 1552 170 17 17 chr6 34589129 34589417 -154690137 - AluJb SINE Alu -18 294 7 1439 181 13 43 chr6 34589446 34589590 -154689964 + AluJb SINE Alu 1 148 -164 2332 64 7 3 chr6 34589590 34589886 -154689668 + AluY SINE Alu 1 297 -14 2260 101 0 0 chr6 34589886 34590182 -154689372 + AluY SINE Alu 1 296 -15 1439 181 13 43 chr6 34590182 34590339 -154689215 + AluJb SINE Alu 146 294 -18 805 113 52 0 chr6 34590344 34590459 -154689095 + AluSq/x SINE Alu 1 121 -192 1681 113 48 61 chr6 34590591 34590746 -154688808 - AluSx SINE Alu -23 289 133 189 0 0 0 chr6 34590746 34590767 -154688787 + (TATG)n Simple_repeat Simple_repeat 2 22 0 2079 107 0 14 chr6 34590767 34591057 -154688497 - AluSq SINE Alu -27 286 1 2201 48 4 0 chr6 34591061 34591330 -154688224 - AluY SINE Alu -28 283 14 1681 113 48 61 chr6 34591330 34591461 -154688093 - AluSx SINE Alu -181 131 1 1735 118 45 21 chr6 34591549 34591838 -154687716 + AluSp SINE Alu 1 296 -17 1985 79 48 7 chr6 34591838 34592129 -154687425 + AluY SINE Alu 1 303 -8 1891 109 11 4 chr6 34592130 34592404 -154687150 + AluSc SINE Alu 2 277 -32 1702 141 10 21 chr6 34592484 34592774 -154686780 + AluY SINE Alu 7 293 -18 1053 194 75 4 chr6 34592980 34593207 -154686347 + AluSx SINE Alu 53 295 -17 1848 109 0 66 chr6 34593261 34593564 -154685990 + AluSq SINE Alu 1 283 -30 1857 119 20 24 chr6 34593706 34594001 -154685553 - AluSc SINE Alu -15 294 1 1839 154 83 0 chr6 34594303 34594628 -154684926 + L1PA16 LINE L1 5804 6155 -11 1258 155 9 122 chr6 34594628 34594774 -154684780 + AluJb SINE Alu 1 89 -223 1957 103 7 47 chr6 34594774 34595075 -154684479 - AluSx SINE Alu -19 293 5 1258 155 9 122 chr6 34595075 34595264 -154684290 + AluJb SINE Alu 89 298 -14 1553 134 161 8 chr6 34595266 34595527 -154684027 + AluSx SINE Alu 2 302 0 1801 133 31 0 chr6 34595538 34595824 -154683730 + AluSg SINE Alu 1 295 -15 231 127 73 18 chr6 34595843 34595897 -154683657 + AluSq/x SINE Alu 56 112 -191 1287 142 93 19 chr6 34595897 34596208 -154683346 + MSTA LTR MaLR 1 364 -64 768 121 14 71 chr6 34597003 34597144 -154682410 + AluSq/x SINE Alu 2 134 -178 1170 201 148 11 chr6 34597272 34597535 -154682019 + AluJb SINE Alu 3 301 -1 1457 104 46 8 chr6 34597604 34597844 -154681710 + AluSc SINE Alu 56 304 -5 618 202 34 0 chr6 34597846 34597965 -154681589 + AluJo/FRAM SINE Alu 180 302 -10 2051 88 24 3 chr6 34597965 34598259 -154681295 + AluY SINE Alu 1 300 -11 23 0 0 0 chr6 34599227 34599250 -154680304 + GC_rich Low_complexity Low_complexity 1 23 0 638 161 36 51 chr6 34599405 34599542 -154680012 + AluJb SINE Alu 2 136 -176 2324 45 21 0 chr6 34599542 34599830 -154679724 + AluY SINE Alu 1 294 -17 2033 125 0 3 chr6 34599935 34600232 -154679322 - AluSx SINE Alu -16 296 1 2065 117 3 16 chr6 34600245 34600561 -154678993 - AluSx SINE Alu 0 312 1 415 284 93 12 chr6 34600566 34600728 -154678826 - MER5B DNA MER1_type 0 178 4 891 173 68 0 chr6 34600773 34600935 -154678619 + AluJb SINE Alu 117 289 -23 2524 55 3 0 chr6 34601020 34601331 -154678223 - AluSp SINE Alu -1 312 1 2308 91 0 7 chr6 34601380 34601689 -154677865 + AluSq SINE Alu 1 307 -6 1777 131 52 17 chr6 34601854 34602144 -154677410 - AluSx SINE Alu -12 300 1 815 174 0 0 chr6 34602145 34602283 -154677271 - AluSq/x SINE Alu -175 138 1 882 133 172 119 chr6 34602303 34602527 -154677027 - L1MA7 LINE L1 -2 6289 6038 1685 165 39 0 chr6 34602527 34602812 -154676742 + AluJo SINE Alu 1 296 -16 882 133 172 119 chr6 34602812 34602941 -154676613 - L1MA7 LINE L1 -253 6038 5917 1787 74 0 29 chr6 34602949 34603193 -154676361 + AluY SINE Alu 64 300 -11 24 53 0 0 chr6 34603564 34603602 -154675952 + AT_rich Low_complexity Low_complexity 1 38 0 246 32 0 0 chr6 34603638 34603669 -154675885 + (A)n Simple_repeat Simple_repeat 1 31 0 1910 66 8 0 chr6 34607275 34607517 -154672037 - AluSg SINE Alu -13 297 54 781 62 0 0 chr6 34607517 34607614 -154671940 - AluSg SINE Alu -212 98 2 1447 124 5 0 chr6 34607617 34607834 -154671720 - AluSg/x SINE Alu -9 303 86 210 71 0 0 chr6 34608035 34608063 -154671491 + (A)n Simple_repeat Simple_repeat 1 28 0 2050 79 3 59 chr6 34608596 34608900 -154670654 + AluSp SINE Alu 7 293 -20 2325 97 3 0 chr6 34609230 34609541 -154670013 - AluSx SINE Alu 0 312 1 2184 114 3 0 chr6 34609922 34610229 -154669325 + AluSx SINE Alu 1 308 -4 1664 154 32 4 chr6 34610538 34610817 -154668737 + AluJo SINE Alu 7 293 -19 212 283 0 0 chr6 34611675 34611728 -154667826 + G-rich Low_complexity Low_complexity 1 53 0 1058 83 89 0 chr6 34612194 34612351 -154667203 - AluJb SINE Alu -6 306 136 2373 75 0 0 chr6 34613138 34613443 -154666111 - AluSg SINE Alu -5 305 1 692 113 0 0 chr6 34614017 34614114 -154665440 - AluJb SINE Alu -5 307 211 274 157 78 0 chr6 34614114 34614165 -154665389 - L1MB5 LINE L1 -78 6096 6042 2112 110 7 3 chr6 34614175 34614475 -154665079 - AluSq SINE Alu -12 301 1 2005 94 3 49 chr6 34614482 34614790 -154664764 - AluSx SINE Alu -18 294 1 1936 131 24 0 chr6 34615393 34615691 -154663863 - AluSx SINE Alu -7 305 1 1359 77 0 0 chr6 34619278 34619459 -154660095 - AluY SINE Alu 0 311 131 1535 65 0 56 chr6 34619459 34619690 -154659864 - AluY SINE Alu -93 218 1 1781 173 90 27 chr6 34620103 34620209 -154659345 + L1MB2 LINE L1 5660 5758 -413 1991 129 0 13 chr6 34620209 34620511 -154659043 + AluSx SINE Alu 1 298 -14 1781 173 90 27 chr6 34620511 34620694 -154658860 + L1MB2 LINE L1 5758 5928 -243 1489 191 10 13 chr6 34620694 34620997 -154658557 + AluJb SINE Alu 1 302 -10 1781 173 90 27 chr6 34620997 34621186 -154658368 + L1MB2 LINE L1 5928 6169 -2 1549 167 7 20 chr6 34621195 34621344 -154658210 + AluJo SINE Alu 1 146 -166 1980 76 52 31 chr6 34621344 34621634 -154657920 + AluSx SINE Alu 1 296 -16 1549 167 7 20 chr6 34621634 34621784 -154657770 + AluJo SINE Alu 146 296 -16 387 0 0 0 chr6 34624221 34624264 -154655290 + (TG)n Simple_repeat Simple_repeat 2 44 0 2292 56 0 7 chr6 34624264 34624550 -154655004 - AluY SINE Alu -27 284 1 2228 102 10 0 chr6 34624799 34625104 -154654450 - AluSq SINE Alu -5 308 1 2142 99 0 0 chr6 34625208 34625492 -154654062 + AluSc SINE Alu 1 284 -25 788 176 47 7 chr6 34625807 34625955 -154653599 - FRAM SINE Alu -3 173 20 1634 125 156 0 chr6 34625962 34626218 -154653336 - AluSq SINE Alu -7 296 1 2088 113 3 0 chr6 34626219 34626521 -154653033 - AluSx SINE Alu -9 303 1 29 0 0 0 chr6 34626559 34626588 -154652966 + AT_rich Low_complexity Low_complexity 1 29 0 889 197 0 0 chr6 34627871 34628023 -154651531 + FRAM SINE Alu 4 155 -11 2134 102 7 0 chr6 34628161 34628454 -154651100 + AluSg SINE Alu 1 295 -15 1712 167 31 14 chr6 34628464 34628751 -154650803 + AluJb SINE Alu 1 292 -20 2455 80 0 0 chr6 34628758 34629069 -154650485 + AluY SINE Alu 1 311 0 817 84 0 0 chr6 34629081 34629188 -154650366 + AluSc SINE Alu 1 107 -202 340 317 112 0 chr6 34629265 34629426 -154650128 - MIR SINE MIR -30 232 54 2125 134 0 0 chr6 34629437 34629743 -154649811 - AluSg1 SINE Alu -3 306 1 648 213 0 44 chr6 34629766 34629902 -154649652 - FLAM_C SINE Alu -13 130 1 2092 125 3 0 chr6 34629944 34630240 -154649314 + AluSx SINE Alu 1 297 -15 439 130 0 14 chr6 34630328 34630397 -154649157 - AluJo SINE Alu -19 293 226 1037 183 33 0 chr6 34630397 34630577 -154648977 - AluJo SINE Alu -126 186 1 2068 99 0 7 chr6 34630883 34631193 -154648361 - AluSg SINE Alu 0 308 1 1972 99 46 30 chr6 34631206 34631509 -154648045 - AluSc SINE Alu -1 308 1 2148 129 0 0 chr6 34631514 34631824 -154647730 - AluSg SINE Alu 0 310 1 806 160 0 8 chr6 34631833 34631958 -154647596 - AluJo SINE Alu -176 136 13 2134 125 0 3 chr6 34632007 34632311 -154647243 - AluSx SINE Alu -9 303 1 1101 162 16 0 chr6 34632629 34632814 -154646740 - AluSg/x SINE Alu -5 305 118 25 0 0 0 chr6 34632814 34632839 -154646715 + AT_rich Low_complexity Low_complexity 1 25 0 1433 126 5 14 chr6 34632839 34632918 -154646636 - AluSx SINE Alu -99 213 135 2414 70 3 0 chr6 34632918 34633219 -154646335 - AluY SINE Alu -9 302 1 1433 126 5 14 chr6 34633219 34633354 -154646200 - AluSx SINE Alu -177 135 1 2238 95 0 3 chr6 34633464 34633770 -154645784 - AluSg SINE Alu -5 305 1 612 191 22 52 chr6 34633777 34633913 -154645641 - FLAM_C SINE Alu -1 132 1 482 179 0 94 chr6 34634102 34634169 -154645385 + AluJo SINE Alu 77 130 -182 2292 79 0 0 chr6 34634169 34634459 -154645095 + AluY SINE Alu 1 290 -21 482 179 0 94 chr6 34634459 34634508 -154645046 + AluJo SINE Alu 130 182 -130 * 522 148 0 0 chr6 34634505 34634586 -154644968 + AluJ/FRAM SINE Alu 218 298 -14 2112 125 10 0 chr6 34634789 34635094 -154644460 + AluSx SINE Alu 1 308 -4 2092 91 37 7 chr6 34635453 34635751 -154643803 + AluSq SINE Alu 1 307 -6 186 147 0 29 chr6 34636893 34636927 -154642627 - MIR3 SINE MIR -31 177 145 1026 95 19 6 chr6 34636928 34637086 -154642468 - AluSg/x SINE Alu -19 293 134 2085 110 7 19 chr6 34637086 34637281 -154642273 - AluSx SINE Alu -7 305 114 1856 92 4 0 chr6 34637281 34637531 -154642023 - AluSg1 SINE Alu -43 266 16 2085 110 7 19 chr6 34637531 34637644 -154641910 - AluSx SINE Alu -198 114 1 26 30 0 0 chr6 34637975 34638008 -154641546 + GC_rich Low_complexity Low_complexity 1 33 0 364 308 62 41 chr6 34639103 34639298 -154640256 + MIR SINE MIR 54 252 -10 311 358 47 5 chr6 34639685 34639699 -154639855 + L2 LINE L2 3080 3092 -221 1937 109 59 30 chr6 34639699 34640002 -154639552 - AluSx SINE Alu 0 312 1 311 358 47 5 chr6 34640002 34640177 -154639377 + L2 LINE L2 3092 3277 -36 1988 52 0 12 chr6 34640299 34640548 -154639006 - AluY SINE Alu -12 299 54 221 0 0 33 chr6 34642442 34642472 -154637082 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 713 185 8 8 chr6 34642472 34642591 -154636963 - AluJb SINE Alu -188 124 3 1035 161 0 0 chr6 34642660 34642821 -154636733 - AluSg/x SINE Alu -18 292 132 729 319 24 67 chr6 34643005 34643191 -154636363 - L1MC4a LINE L1 -1868 5940 5748 2493 77 0 0 chr6 34643191 34643504 -154636050 - AluSq SINE Alu 0 313 1 729 319 24 67 chr6 34643504 34643596 -154635958 - L1MC4a LINE L1 -2060 5748 5654 1524 65 52 60 chr6 34643596 34643749 -154635805 - MER30 DNA MER1_type 0 230 78 2165 59 3 46 chr6 34643749 34644085 -154635469 - AluY SINE Alu 0 311 1 1524 65 52 60 chr6 34644085 34644163 -154635391 - MER30 DNA MER1_type -152 78 1 729 319 24 67 chr6 34644163 34644600 -154634954 - L1MC4a LINE L1 -2154 5654 5255 269 257 29 0 chr6 34644854 34644924 -154634630 - L2 LINE L2 0 3313 3242 2199 88 0 10 chr6 34644977 34645299 -154634255 - AluY SINE Alu 0 311 1 2093 119 16 0 chr6 34645301 34645604 -154633950 - AluSg SINE Alu -2 308 1 2265 82 0 25 chr6 34645670 34645987 -154633567 - AluY SINE Alu -2 309 1 843 113 17 0 chr6 34646014 34646129 -154633425 - FLAM_C SINE Alu -26 117 1 2066 121 7 7 chr6 34646163 34646461 -154633093 - AluSx SINE Alu -14 298 1 1238 194 57 21 chr6 34646571 34646880 -154632674 - AluJo SINE Alu 0 312 1 2141 128 3 0 chr6 34647128 34647433 -154632121 - AluSx SINE Alu 0 312 7 2101 142 3 0 chr6 34647534 34647845 -154631709 - AluSx SINE Alu 0 312 1 989 83 0 8 chr6 34647847 34647980 -154631574 - AluSq/x SINE Alu -180 132 1 2187 108 0 3 chr6 34649863 34650160 -154629394 + AluSg SINE Alu 1 296 -14 640 220 0 0 chr6 34650166 34650284 -154629270 - FLAM_C SINE Alu -25 118 1 1971 142 0 16 chr6 34650293 34650602 -154628952 - AluSx SINE Alu -8 304 1 451 273 79 7 chr6 34652451 34652590 -154626964 + MER91A DNA MER1_type 47 195 -1 629 37 0 0 chr6 34654919 34655000 -154624554 + HY3 scRNA scRNA 1 81 -20 1864 141 16 10 chr6 34655018 34655323 -154624231 + AluJb SINE Alu 1 307 -5 204 343 97 15 chr6 34655418 34655552 -154624002 - MIR3 SINE MIR -61 147 3 393 314 43 5 chr6 34658043 34658228 -154621326 - L2 LINE L2 -411 2903 2712 211 182 212 0 chr6 34658643 34658709 -154620845 - MIR SINE MIR -99 109 30 562 169 203 0 chr6 34658868 34658986 -154620568 - FLAM_C SINE Alu -1 142 1 2359 93 3 0 chr6 34659642 34659954 -154619600 - AluSq SINE Alu 0 313 1 2079 111 0 0 chr6 34659957 34660257 -154619297 - AluSx SINE Alu 0 305 6 2433 67 3 13 chr6 34660928 34661271 -154618283 + AluSp SINE Alu 1 340 0 1810 138 0 35 chr6 34661379 34661691 -154617863 + AluJb SINE Alu 3 303 -9 2610 39 3 0 chr6 34661807 34662117 -154617437 - AluY SINE Alu 0 311 1 308 290 0 30 chr6 34662235 34662335 -154617219 + MIR SINE MIR 51 147 -115 744 101 70 8 chr6 34662362 34662491 -154617063 - LTR7 LTR ERV1 -313 137 1 355 242 102 8 chr6 34662652 34662780 -154616774 - MIR SINE MIR -4 258 119 1840 128 30 37 chr6 34662786 34663084 -154616470 - AluJo SINE Alu 0 312 17 267 79 0 0 chr6 34663190 34663228 -154616326 + (CCCTG)n Simple_repeat Simple_repeat 1 38 0 1730 100 30 118 chr6 34663239 34663568 -154615986 - AluSq SINE Alu -13 300 1 1915 130 10 17 chr6 34664970 34665271 -154614283 - AluSq SINE Alu -14 299 1 792 165 24 0 chr6 34665373 34665500 -154614054 - FLAM_C SINE Alu -13 130 1 2140 113 0 28 chr6 34665658 34665977 -154613577 - AluSg SINE Alu 0 310 1 317 266 106 11 chr6 34666701 34666795 -154612759 + L1MC4 LINE L1 6599 6701 -1341 477 136 239 7 chr6 34666802 34666957 -154612597 - L1ME3 LINE L1 -2 6160 5970 2363 83 6 3 chr6 34668360 34668672 -154610882 - AluSq SINE Alu 0 313 1 862 132 28 7 chr6 34668731 34668896 -154610658 + AluJb SINE Alu 137 304 0 197 374 130 0 chr6 34672729 34672844 -154606710 + L2 LINE L2 3139 3268 -4 267 370 0 43 chr6 34675803 34675858 -154603696 - L2 LINE L2 -39 3233 3177 2108 118 16 3 chr6 34675858 34676163 -154603391 + AluSx SINE Alu 1 309 -3 267 370 0 43 chr6 34676163 34676245 -154603309 - L2 LINE L2 -95 3177 3102 2214 75 0 0 chr6 34676385 34676704 -154602850 + AluY SINE Alu 1 319 0 795 232 110 84 chr6 34676709 34676775 -154602779 + L1MC5 LINE L1 6973 7036 -925 549 140 50 10 chr6 34676775 34676875 -154602679 + U6 snRNA snRNA 1 104 -3 795 232 110 84 chr6 34676875 34676890 -154602664 + L1MC5 LINE L1 7036 7049 -912 2317 74 0 20 chr6 34676890 34677187 -154602367 + AluSc SINE Alu 1 291 -18 795 232 110 84 chr6 34677187 34677357 -154602197 + L1MC5 LINE L1 7049 7213 -748 2153 81 3 11 chr6 34677357 34677669 -154601885 + AluSc SINE Alu 1 310 0 795 232 110 84 chr6 34677669 34678033 -154601521 + L1MC5 LINE L1 7213 7566 -395 1809 162 3 14 chr6 34678033 34678167 -154601387 + AluJo SINE Alu 1 135 -177 2248 92 3 10 chr6 34678167 34678505 -154601049 + AluSp SINE Alu 1 313 0 1809 162 3 14 chr6 34678505 34678667 -154600887 + AluJo SINE Alu 135 294 -18 795 232 110 84 chr6 34678667 34678773 -154600781 + L1MC5 LINE L1 7566 7723 -238 2313 87 0 7 chr6 34678773 34679082 -154600472 + AluSc SINE Alu 1 307 -2 795 232 110 84 chr6 34679082 34679129 -154600425 + L1MC5 LINE L1 7723 7767 -194 842 256 11 5 chr6 34679129 34679320 -154600234 + AluJo SINE Alu 116 307 -5 347 220 38 30 chr6 34679324 34679375 -154600179 + L1MC5 LINE L1 7771 7820 -141 2236 125 0 0 chr6 34679375 34679687 -154599867 + AluSx SINE Alu 1 312 0 347 220 38 30 chr6 34679687 34679767 -154599787 + L1MC5 LINE L1 7820 7903 -58 2149 114 16 0 chr6 34679800 34680107 -154599447 + AluSx SINE Alu 1 312 0 2302 98 3 0 chr6 34681081 34681387 -154598167 - AluSc SINE Alu -2 307 1 1837 105 124 0 chr6 34681402 34681668 -154597886 - AluSg SINE Alu 0 300 2 2016 151 0 0 chr6 34681706 34682011 -154597543 - AluSx SINE Alu -7 305 1 862 150 0 0 chr6 34682028 34682155 -154597399 - FLAM_C SINE Alu -16 127 1 2240 97 0 0 chr6 34682175 34682474 -154597080 - AluSx SINE Alu -13 299 1 2075 90 30 3 chr6 34682532 34682832 -154596722 + AluY SINE Alu 1 308 -3 321 325 73 7 chr6 34683255 34683406 -154596148 - MIR3 SINE MIR -27 181 21 578 121 12 0 chr6 34683458 34683541 -154596013 - AluJ/FLAM SINE Alu -228 84 1 180 337 60 0 chr6 34684026 34684109 -154595445 - L2 LINE L2 -23 3290 3203 2003 149 0 0 chr6 34684272 34684568 -154594986 - AluSx SINE Alu -16 296 1 2292 91 0 0 chr6 34684614 34684912 -154594642 + AluSg SINE Alu 1 298 -12 2323 74 24 0 chr6 34685185 34685482 -154594072 + AluSq SINE Alu 1 304 -9 449 327 152 0 chr6 34685529 34685740 -154593814 - L2 LINE L2 -847 2467 2225 2120 113 10 0 chr6 34685809 34686102 -154593452 - AluSx SINE Alu -16 296 1 2261 70 10 10 chr6 34686707 34687029 -154592525 + AluY SINE Alu 1 311 0 1953 132 0 38 chr6 34687075 34687393 -154592161 + AluSx SINE Alu 1 306 -6 2206 82 0 0 chr6 34687429 34687709 -154591845 + AluSq SINE Alu 1 280 -33 396 0 0 0 chr6 34687709 34687753 -154591801 + (CA)n Simple_repeat Simple_repeat 1 44 0 2325 81 3 0 chr6 34687768 34688066 -154591488 + AluY SINE Alu 1 299 -12 2170 95 34 0 chr6 34688703 34688997 -154590557 - AluSx SINE Alu -8 304 1 422 298 51 6 chr6 34689948 34690106 -154589448 - MIR3 SINE MIR -29 179 15 189 283 123 28 chr6 34690359 34690465 -154589089 + L3 LINE CR1 1353 1468 -109 223 289 39 70 chr6 34691174 34691271 -154588283 + L2 LINE L2 3189 3283 -30 1946 160 0 3 chr6 34691271 34691583 -154587971 + AluSx SINE Alu 1 311 -1 223 289 39 70 chr6 34691583 34691613 -154587941 + L2 LINE L2 3283 3312 -1 2168 131 45 70 chr6 34691675 34692118 -154587436 + MSTB1 LTR MaLR 1 432 0 2011 128 0 17 chr6 34692146 34692442 -154587112 + AluSg SINE Alu 1 291 -19 387 0 0 0 chr6 34692444 34692487 -154587067 + (TG)n Simple_repeat Simple_repeat 2 44 0 260 291 55 9 chr6 34692715 34692825 -154586729 - MIR SINE MIR -56 206 92 2299 95 0 0 chr6 34692841 34693145 -154586409 - AluSx SINE Alu -8 304 1 183 100 0 0 chr6 34693219 34693249 -154586305 + (TCC)n Simple_repeat Simple_repeat 2 31 0 283 200 0 29 chr6 34694236 34694306 -154585248 + MIR SINE MIR 189 256 -6 259 245 223 0 chr6 34694569 34694663 -154584891 - L2 LINE L2 0 3313 3199 423 38 0 0 chr6 34694665 34694718 -154584836 + (TG)n Simple_repeat Simple_repeat 2 54 0 189 0 0 0 chr6 34694753 34694774 -154584780 + (TA)n Simple_repeat Simple_repeat 2 22 0 394 245 49 10 chr6 34696139 34696241 -154583313 - MER5A DNA MER1_type -80 109 4 247 321 109 60 chr6 34696456 34696512 -154583042 - L2 LINE L2 0 3272 3220 2525 224 63 0 chr6 34696512 34697087 -154582467 - MER90 LTR ERV1 0 614 4 247 321 109 60 chr6 34697087 34697397 -154582157 - L2 LINE L2 -52 3220 2888 236 235 71 31 chr6 34697577 34697675 -154581879 - L2 LINE L2 -653 2661 2560 257 195 168 121 chr6 34699292 34699378 -154580176 - MER5A DNA MER1_type -21 168 71 2227 103 3 3 chr6 34699378 34699689 -154579865 - AluY SINE Alu 0 311 1 257 195 168 121 chr6 34699689 34699751 -154579803 - MER5A DNA MER1_type -118 71 13 1791 168 54 3 chr6 34699760 34700111 -154579443 - L1MB3 LINE L1 -2 6181 5813 830 147 0 22 chr6 34700111 34700237 -154579317 - FLAM_C SINE Alu -187 125 1 736 180 7 13 chr6 34700237 34700387 -154579167 - L1MB3 LINE L1 -340 5831 5683 199 267 67 38 chr6 34700966 34701071 -154578483 - L2 LINE L2 -653 2661 2554 472 348 48 5 chr6 34702876 34703086 -154576468 + MIR SINE MIR 12 230 -32 433 311 30 7 chr6 34704325 34704460 -154575094 + MIR SINE MIR 16 153 -55 546 146 27 64 chr6 34712922 34713032 -154566522 + FLAM_C SINE Alu 35 140 -3 201 158 0 0 chr6 34713398 34713436 -154566118 + (CAG)n Simple_repeat Simple_repeat 1 38 0 339 226 24 0 chr6 34713923 34714007 -154565547 - MER94 DNA DNA -16 118 33 268 317 50 20 chr6 34714046 34714147 -154565407 - MIR SINE MIR -27 235 132 550 329 93 66 chr6 34715333 34715698 -154563856 + L2 LINE L2 2898 3272 0 217 365 187 29 chr6 34715920 34716161 -154563393 + L3 LINE CR1 674 952 -625 188 291 35 23 chr6 34718434 34718520 -154561034 + L2 LINE L2 2174 2260 -1054 808 154 0 22 chr6 34718995 34719131 -154560423 + FLAM_C SINE Alu 1 133 0 194 306 16 97 chr6 34720754 34720878 -154558676 - L2 LINE L2 -595 2719 2606 336 281 167 9 chr6 34721556 34721670 -154557884 - MIR SINE MIR -59 203 72 221 296 17 35 chr6 34726076 34726191 -154553363 + C-rich Low_complexity Low_complexity 2 114 0 5162 2 0 0 chr6 34728070 34728618 -154550936 + LTR14 LTR ERVK 1 548 0 31463 1 0 0 chr6 34728618 34733882 -154545672 + HERVKC4 LTR ERVK 1 5262 0 4210 71 16 20 chr6 34733882 34734432 -154545122 + LTR14 LTR ERVK 1 548 0 201 39 0 0 chr6 34736412 34736438 -154543116 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 471 194 16 8 chr6 34739830 34739959 -154539595 + CT-rich Low_complexity Low_complexity 3 132 0 1347 167 59 42 chr6 34740684 34740971 -154538583 + AluJo SINE Alu 1 292 -20 1968 135 20 0 chr6 34741033 34741330 -154538224 + AluSx SINE Alu 1 303 -9 1905 117 13 30 chr6 34741334 34741472 -154538082 + AluSx SINE Alu 1 140 -172 2227 79 3 26 chr6 34741472 34741777 -154537777 + AluY SINE Alu 1 298 -13 1905 117 13 30 chr6 34741777 34741937 -154537617 + AluSx SINE Alu 140 294 -18 5583 76 25 40 chr6 34742077 34743460 -154536094 + SVA Other Other 52 1009 -377 749 71 20 0 chr6 34743513 34743612 -154535942 + AluSq/x SINE Alu 32 132 -180 2092 115 0 7 chr6 34743615 34743920 -154535634 + AluSc SINE Alu 1 303 -6 1251 203 0 114 chr6 34744329 34744679 -154534875 - AluSx SINE Alu -2 310 1 1900 132 17 0 chr6 34744816 34745111 -154534443 - AluJb SINE Alu -12 300 1 325 346 13 38 chr6 34745188 34745347 -154534207 - MER5A DNA MER1_type 0 189 35 233 321 151 20 chr6 34745597 34745896 -154533658 + L2 LINE L2 2153 2490 -824 279 239 214 34 chr6 34752491 34752608 -154526946 + MIR3 SINE MIR 55 192 -16 1650 183 0 31 chr6 34752710 34753027 -154526527 + AluJb SINE Alu 5 311 -1 242 327 18 36 chr6 34753402 34753512 -154526042 - MIR SINE MIR -25 237 130 354 314 99 56 chr6 34753655 34753964 -154525590 - L1MB8 LINE L1 -245 5933 5639 2262 100 0 3 chr6 34753964 34754274 -154525280 - AluSc SINE Alu 0 309 1 354 314 99 56 chr6 34754274 34754557 -154524997 - L1MB8 LINE L1 -539 5639 5311 460 310 0 0 chr6 34754558 34754671 -154524883 - MIR SINE MIR -136 126 14 355 336 0 31 chr6 34758101 34758229 -154521325 + MER91B DNA MER1_type 12 135 -55 319 318 11 0 chr6 34758229 34758317 -154521237 + MER91B DNA MER1_type 100 188 -2 192 346 0 30 chr6 34759265 34759366 -154520188 - MER5B DNA MER1_type -80 98 1 242 326 54 8 chr6 34760880 34761009 -154518545 + L2 LINE L2 2120 2254 -1060 224 337 102 0 chr6 34762508 34762606 -154516948 + MIR3 SINE MIR 95 202 -6 1963 130 0 48 chr6 34762736 34762883 -154516671 + AluSx SINE Alu 1 127 -185 2395 45 10 0 chr6 34762883 34763175 -154516379 + AluY SINE Alu 1 295 -16 1963 130 0 48 chr6 34763175 34763342 -154516212 + AluSx SINE Alu 127 300 -12 1779 160 0 35 chr6 34763360 34763673 -154515881 + AluJb SINE Alu 9 310 -2 404 316 0 0 chr6 34764392 34764544 -154515010 + (CAGAGA)n Simple_repeat Simple_repeat 5 156 0 287 316 119 26 chr6 34765583 34765852 -154513702 - L2 LINE L2 -899 2415 2122 323 258 129 59 chr6 34769210 34769396 -154510158 + MIR3 SINE MIR 1 199 -9 2150 114 3 0 chr6 34774438 34774737 -154504817 + AluSx SINE Alu 5 304 -8 844 221 39 54 chr6 34776233 34776533 -154503021 + L2 LINE L2 2784 3074 -239 514 123 37 0 chr6 34776552 34776633 -154502921 + AluJb SINE Alu 28 111 -201 826 146 70 6 chr6 34776692 34776863 -154502691 + MLT1C LTR MaLR 1 182 -285 735 83 0 0 chr6 34776899 34776995 -154502559 + AluSp/q SINE Alu 206 301 -12 2402 74 3 0 chr6 34776999 34777308 -154502246 + AluSg SINE Alu 1 310 0 1792 147 0 43 chr6 34777317 34777643 -154501911 + AluSx SINE Alu 1 312 0 878 236 78 14 chr6 34777702 34777962 -154501592 + MLT1C LTR MaLR 187 589 -4 189 107 0 0 chr6 34778799 34778827 -154500727 + (ATG)n Simple_repeat Simple_repeat 3 30 0 240 314 141 0 chr6 34778838 34778959 -154500595 - MIR SINE MIR -4 258 121 38 0 0 20 chr6 34779014 34779045 -154500509 + AT_rich Low_complexity Low_complexity 1 32 -16 1904 130 3 23 chr6 34779045 34779346 -154500208 + AluSx SINE Alu 1 295 -17 38 0 0 20 chr6 34779346 34779363 -154500191 + AT_rich Low_complexity Low_complexity 32 48 0 627 231 8 8 chr6 34779373 34779490 -154500064 + FRAM SINE Alu 1 117 -59 195 42 0 0 chr6 34779593 34779617 -154499937 + (A)n Simple_repeat Simple_repeat 1 24 0 1825 136 0 46 chr6 34780026 34780172 -154499382 + AluSx SINE Alu 1 127 -185 2213 85 24 0 chr6 34780172 34780466 -154499088 + AluSp SINE Alu 1 301 -12 1825 136 0 46 chr6 34780466 34780621 -154498933 + AluSx SINE Alu 127 288 -24 501 84 0 0 chr6 34780621 34780692 -154498862 + (TA)n Simple_repeat Simple_repeat 1 71 0 345 346 132 0 chr6 34780695 34780900 -154498654 - MIR SINE MIR -11 251 20 2054 120 0 23 chr6 34781095 34781404 -154498150 - AluSx SINE Alu -4 308 7 949 121 8 0 chr6 34781431 34781563 -154497991 + FLAM_C SINE Alu 1 133 0 186 368 0 0 chr6 34781581 34781638 -154497916 - MIR SINE MIR -136 72 16 2064 103 27 3 chr6 34781908 34782200 -154497354 - AluSx SINE Alu -13 299 1 2102 122 0 3 chr6 34782322 34782633 -154496921 + AluSg SINE Alu 1 310 0 1847 107 56 0 chr6 34783370 34783669 -154495885 + AluSx SINE Alu 1 314 0 234 226 97 0 chr6 34783727 34783789 -154495765 - MIR SINE MIR -79 183 116 1985 120 7 0 chr6 34784079 34784398 -154495156 - AluSq SINE Alu 0 321 1 27 49 0 0 chr6 34784446 34784487 -154495067 + AT_rich Low_complexity Low_complexity 1 41 0 181 319 59 25 chr6 34784560 34784679 -154494875 + L2 LINE L2 3191 3313 0 2451 231 96 25 chr6 34785714 34785972 -154493582 + L1ME3 LINE L1 5429 5667 -495 6764 57 9 31 chr6 34785972 34787619 -154491935 + SVA Other Other 9 1386 0 2451 231 96 25 chr6 34787619 34788043 -154491511 + L1ME3 LINE L1 5667 6162 0 828 188 0 0 chr6 34788367 34788500 -154491054 + FLAM_A SINE Alu 1 133 0 2132 101 3 3 chr6 34788500 34788797 -154490757 + AluSp SINE Alu 1 297 -16 2021 85 44 0 chr6 34788831 34789135 -154490419 - AluSx SINE Alu 0 317 2 2215 104 3 0 chr6 34789136 34789434 -154490120 - AluSg SINE Alu -7 303 5 539 302 88 0 chr6 34789434 34789639 -154489915 - MIR SINE MIR -37 225 3 248 246 87 0 chr6 34790271 34790340 -154489214 - MER116 DNA Mariner 0 80 6 730 158 0 0 chr6 34792131 34792245 -154487309 + AluSg/x SINE Alu 187 300 -9 2235 91 7 3 chr6 34792245 34792543 -154487011 + AluSq SINE Alu 1 299 -14 1324 205 116 32 chr6 34792627 34793032 -154486522 + MLT1J LTR MaLR 1 439 -72 740 257 93 51 chr6 34793122 34793284 -154486270 + MLT1I LTR MaLR 108 285 -124 2288 91 0 0 chr6 34793284 34793582 -154485972 + AluSx SINE Alu 1 298 -14 740 257 93 51 chr6 34793582 34793656 -154485898 + MLT1I LTR MaLR 285 354 -55 954 233 12 33 chr6 34793836 34794081 -154485473 - MLT1H LTR MaLR -296 253 14 464 301 174 17 chr6 34794390 34794626 -154484928 + MLT1J LTR MaLR 239 511 0 2387 59 0 3 chr6 34794777 34795080 -154484474 + AluY SINE Alu 1 302 -9 2349 67 3 22 chr6 34795088 34795404 -154484150 + AluY SINE Alu 1 310 -1 2196 111 0 13 chr6 34796001 34796317 -154483237 - AluSx SINE Alu 0 312 1 1194 231 165 18 chr6 34796668 34797067 -154482487 + LTR16C LTR ERVL 19 476 -15 1057 237 4 4 chr6 34797093 34797321 -154482233 - MIR SINE MIR -33 229 2 304 295 83 68 chr6 34798953 34799350 -154480204 + L1MC4a LINE L1 5665 6067 -1741 2125 102 0 0 chr6 34799432 34799756 -154479798 + AluSq SINE Alu 1 324 0 347 204 66 105 chr6 34799801 34799953 -154479601 - L1MC5 LINE L1 -22 7939 7794 2056 91 56 7 chr6 34799972 34800259 -154479295 - AluSg1 SINE Alu -8 301 1 1627 175 7 36 chr6 34800263 34800572 -154478982 - AluJo SINE Alu -12 300 1 1448 166 11 37 chr6 34800582 34800853 -154478701 - AluJo SINE Alu -20 292 29 2251 97 0 0 chr6 34800953 34801253 -154478301 - AluSx SINE Alu -12 300 1 1342 158 35 13 chr6 34801259 34801585 -154477969 - L1PA16 LINE L1 0 6174 5805 2225 105 3 0 chr6 34801681 34801987 -154477567 - AluSx SINE Alu -5 307 1 694 148 25 25 chr6 34801987 34802109 -154477445 - AluSg/x SINE Alu -7 302 181 488 355 51 16 chr6 34802128 34802295 -154477259 + LTR16C LTR ERVL 166 326 -165 2329 95 0 0 chr6 34802295 34802599 -154476955 - AluSx SINE Alu -8 304 1 488 355 51 16 chr6 34802599 34802744 -154476810 + LTR16C LTR ERVL 326 489 -2 409 109 0 16 chr6 34802951 34803015 -154476539 - Alu SINE Alu -246 64 2 2331 60 10 3 chr6 34803088 34803387 -154476167 - AluY SINE Alu -10 301 1 302 299 34 28 chr6 34803703 34803880 -154475674 - L2 LINE L2 -923 2391 2214 2236 88 7 0 chr6 34804236 34804533 -154475021 - AluSp SINE Alu -14 299 1 2388 84 0 0 chr6 34805203 34805512 -154474042 + AluSx SINE Alu 1 309 -3 42 0 0 0 chr6 34805514 34805556 -154473998 + AT_rich Low_complexity Low_complexity 1 42 0 2314 79 0 3 chr6 34805556 34805860 -154473694 + AluY SINE Alu 1 303 -8 2063 115 0 10 chr6 34807338 34807643 -154471911 - AluSx SINE Alu -10 302 1 228 305 9 19 chr6 34809876 34809981 -154469573 + CT-rich Low_complexity Low_complexity 4 107 0 22 0 0 0 chr6 34810645 34810667 -154468887 + AT_rich Low_complexity Low_complexity 1 22 0 1945 95 95 7 chr6 34811225 34811509 -154468045 - AluSg SINE Alu -1 309 1 365 303 125 7 chr6 34811962 34812114 -154467440 + MIR SINE MIR 19 188 -74 852 131 7 36 chr6 34812846 34812983 -154466571 - FLAM_C SINE Alu 0 133 1 31 0 0 0 chr6 34812983 34813014 -154466540 + AT_rich Low_complexity Low_complexity 1 31 0 218 352 21 7 chr6 34813101 34813246 -154466308 + CT-rich Low_complexity Low_complexity 2 148 0 355 305 31 8 chr6 34813824 34813952 -154465602 + MIR3 SINE MIR 15 145 -63 214 318 45 8 chr6 34816406 34816538 -154463016 + G-rich Low_complexity Low_complexity 2 138 0 1317 268 49 24 chr6 34819731 34820234 -154459320 - L1ME3A LINE L1 -63 6107 5535 616 303 131 50 chr6 34820390 34821017 -154458537 - L2 LINE L2 0 3313 2550 1910 152 0 7 chr6 34821017 34821320 -154458234 + AluJo SINE Alu 1 301 -11 616 303 131 50 chr6 34821320 34821740 -154457814 - L2 LINE L2 -763 2550 2165 272 133 0 0 chr6 34821766 34821811 -154457743 + MER5B DNA MER1_type 16 60 -118 431 253 0 0 chr6 34821813 34821912 -154457642 - MER3 DNA MER1_type -76 133 35 2226 98 3 3 chr6 34821923 34822228 -154457326 + AluSx SINE Alu 1 305 -7 397 316 77 37 chr6 34822228 34822489 -154457065 - L2 LINE L2 -1325 1989 1715 2161 103 0 40 chr6 34822494 34822815 -154456739 - AluSx SINE Alu -4 308 1 1970 224 63 98 chr6 34822817 34823007 -154456547 - L1ME3 LINE L1 -12 6150 5955 2178 121 0 0 chr6 34823007 34823314 -154456240 - AluSc SINE Alu -2 307 1 1970 224 63 98 chr6 34823314 34823930 -154455624 - L1ME3 LINE L1 -207 5955 5372 1788 163 3 3 chr6 34823932 34824226 -154455328 + AluJo SINE Alu 3 296 -16 1167 129 29 43 chr6 34824232 34824365 -154455189 + AluSx SINE Alu 5 135 -177 2173 86 3 3 chr6 34824365 34824657 -154454897 + AluY SINE Alu 1 292 -19 1167 129 29 43 chr6 34824657 34824732 -154454822 + AluSx SINE Alu 135 210 -102 2149 96 16 0 chr6 34824851 34825154 -154454400 - AluSq SINE Alu -5 308 1 1815 164 10 6 chr6 34825197 34825508 -154454046 - AluJb SINE Alu 0 312 1 750 268 42 65 chr6 34825526 34825549 -154454005 - L1ME3 LINE L1 -1042 5104 5082 2094 126 0 0 chr6 34825549 34825850 -154453704 + AluSx SINE Alu 1 301 -11 750 268 42 65 chr6 34825850 34826180 -154453374 - L1ME3 LINE L1 -1064 5082 4759 598 196 23 60 chr6 34826292 34826425 -154453129 + FLAM_A SINE Alu 1 128 -5 2060 114 7 0 chr6 34826429 34826719 -154452835 + AluSx SINE Alu 7 298 -14 354 275 152 85 chr6 34826818 34827175 -154452379 - L2 LINE L2 0 3313 2888 2182 93 3 0 chr6 34827175 34827498 -154452056 + AluSp SINE Alu 1 324 0 354 275 152 85 chr6 34827498 34827659 -154451895 - L2 LINE L2 -425 2888 2739 362 242 73 73 chr6 34828203 34828327 -154451227 - MER91A DNA MER1_type -3 193 70 506 277 125 40 chr6 34831044 34831420 -154448134 - L3 LINE CR1 -78 1499 1092 255 229 14 0 chr6 34831543 34831613 -154447941 - L1ME4a LINE L1 -6 6115 6045 532 282 120 53 chr6 34831653 34831829 -154447725 - L3 LINE CR1 -730 847 684 2016 126 0 19 chr6 34831829 34832146 -154447408 - AluJb SINE Alu -1 311 1 532 282 120 53 chr6 34832146 34832327 -154447227 - L3 LINE CR1 -893 684 466 368 335 41 46 chr6 34832590 34832787 -154446767 - L1ME4a LINE L1 0 6121 5926 1320 123 0 10 chr6 34833232 34833427 -154446127 - AluSq SINE Alu 0 313 121 1076 191 5 5 chr6 34833654 34833842 -154445712 + MER5A DNA MER1_type 1 188 -1 2086 119 14 0 chr6 34834179 34834472 -154445082 + AluSq SINE Alu 1 297 -16 2461 60 3 0 chr6 34834543 34834843 -154444711 + AluSp SINE Alu 1 301 -12 324 319 53 18 chr6 34835730 34835843 -154443711 + L2 LINE L2 3188 3304 -9 864 217 48 10 chr6 34836215 34836422 -154443132 + MIR SINE MIR 28 242 -20 219 109 43 43 chr6 34837991 34838037 -154441517 + (CCCCAG)n Simple_repeat Simple_repeat 1 46 0 24 77 0 0 chr6 34838286 34838338 -154441216 + GC_rich Low_complexity Low_complexity 1 52 0 300 324 71 19 chr6 34841602 34841812 -154437742 - L2 LINE L2 -203 3069 2849 1704 112 13 69 chr6 34841998 34842301 -154437253 + AluJo SINE Alu 11 296 -16 423 345 147 21 chr6 34842582 34843113 -154436441 - L2 LINE L2 -1104 2210 1613 732 318 5 5 chr6 34843359 34843554 -154436000 - MER91A DNA MER1_type 0 196 2 882 225 43 10 chr6 34845230 34845439 -154434115 + MIR SINE MIR 1 216 -46 2473 74 0 0 chr6 34845440 34845751 -154433803 + AluY SINE Alu 1 311 0 676 195 87 7 chr6 34847067 34847216 -154432338 + MIR SINE MIR 76 236 -26 563 98 0 33 chr6 34847321 34847413 -154432141 + 5S rRNA rRNA 2 90 -31 2186 112 3 6 chr6 34847471 34847784 -154431770 - AluSx SINE Alu 0 312 1 950 42 35 7 chr6 34847795 34847938 -154431616 + (TTTC)n Simple_repeat Simple_repeat 4 150 0 2094 108 0 0 chr6 34847947 34848216 -154431338 - AluSx SINE Alu -43 269 1 269 300 51 87 chr6 34848857 34848949 -154430605 + MIR3 SINE MIR 1 95 -166 2349 103 0 0 chr6 34848949 34849261 -154430293 - AluSx SINE Alu 0 312 1 269 300 51 87 chr6 34849261 34849378 -154430176 + MIR3 SINE MIR 95 203 -58 1597 273 157 23 chr6 34850221 34850981 -154428573 - L2 LINE L2 0 3313 2375 2178 92 3 0 chr6 34850981 34851274 -154428280 + AluSp SINE Alu 1 294 -19 1597 273 157 23 chr6 34851274 34851469 -154428085 - L2 LINE L2 -938 2375 2208 1917 102 40 30 chr6 34851638 34851942 -154427612 + AluSx SINE Alu 2 308 -4 1597 202 39 30 chr6 34852879 34852993 -154426561 - Charlie4a DNA MER1_type -1487 474 363 1990 100 71 4 chr6 34852993 34853273 -154426281 - AluSq SINE Alu -14 299 1 1597 202 39 30 chr6 34853273 34853594 -154425960 - Charlie4a DNA MER1_type -1598 363 35 1939 122 40 14 chr6 34854095 34854391 -154425163 + AluSg SINE Alu 7 310 0 668 215 71 18 chr6 34856503 34856728 -154422826 - L1ME1 LINE L1 -119 6047 5806 303 226 164 7 chr6 34858609 34858755 -154420799 - L1MC5 LINE L1 -6 7955 7787 934 32 16 8 chr6 34858774 34858900 -154420654 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 1751 145 14 21 chr6 34858902 34859185 -154420369 - AluJb SINE Alu -31 281 1 1274 198 67 0 chr6 34859201 34859529 -154420025 - L1MB7 LINE L1 -9 6175 5826 279 0 0 0 chr6 34859546 34859577 -154419977 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1631 182 0 7 chr6 34859577 34859857 -154419697 - AluJo SINE Alu -24 288 11 328 239 49 84 chr6 34859919 34860027 -154419527 - L1MC5 LINE L1 -175 7786 7676 1971 118 6 29 chr6 34860027 34860146 -154419408 + AluSx SINE Alu 1 121 -191 183 42 0 0 chr6 34860146 34860170 -154419384 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1971 118 6 29 chr6 34860170 34860365 -154419189 + AluSx SINE Alu 121 308 -4 328 239 49 84 chr6 34860365 34860519 -154419035 - L1MC5 LINE L1 -285 7676 7533 757 279 5 0 chr6 34860526 34860716 -154418838 - L2 LINE L2 -239 3074 2884 265 272 71 112 chr6 34861379 34861465 -154418089 + MIR SINE MIR 20 97 -165 2291 97 0 3 chr6 34861465 34861773 -154417781 + AluSx SINE Alu 3 309 -3 265 272 71 112 chr6 34861773 34861855 -154417699 + MIR SINE MIR 97 181 -81 2203 109 0 25 chr6 34862550 34862870 -154416684 - AluSx SINE Alu 0 312 1 2215 71 7 0 chr6 34862878 34863202 -154416352 - AluY SINE Alu 0 326 1 557 294 165 47 chr6 34864878 34865037 -154414517 + L1ME4a LINE L1 5712 5851 -270 2121 112 7 0 chr6 34865037 34865332 -154414222 + AluSx SINE Alu 1 297 -15 557 294 165 47 chr6 34865332 34865536 -154414018 + L1ME4a LINE L1 5851 6118 -3 2345 91 10 0 chr6 34865614 34865923 -154413631 - AluSp SINE Alu -1 312 1 2290 115 0 0 chr6 34866527 34866839 -154412715 - AluSx SINE Alu 0 312 1 328 351 56 16 chr6 34867114 34867365 -154412189 - L1MB7 LINE L1 -297 5824 5564 208 291 47 63 chr6 34868183 34868310 -154411244 - L2 LINE L2 -252 3020 2896 216 271 77 82 chr6 34868496 34868666 -154410888 - L2 LINE L2 -653 2661 2493 394 245 49 10 chr6 34870256 34870358 -154409196 - MER5A DNA MER1_type -80 109 4 247 321 109 60 chr6 34870573 34870629 -154408925 - L2 LINE L2 0 3272 3220 2525 224 63 0 chr6 34870629 34871204 -154408350 - MER90 LTR ERV1 0 614 4 247 321 109 60 chr6 34871204 34871514 -154408040 - L2 LINE L2 -52 3220 2888 236 235 71 31 chr6 34871694 34871792 -154407762 - L2 LINE L2 -653 2661 2560 257 195 168 121 chr6 34873409 34873495 -154406059 - MER5A DNA MER1_type -21 168 71 2227 103 3 3 chr6 34873495 34873806 -154405748 - AluY SINE Alu 0 311 1 257 195 168 121 chr6 34873806 34873868 -154405686 - MER5A DNA MER1_type -118 71 13 1791 168 54 3 chr6 34873877 34874228 -154405326 - L1MB3 LINE L1 -2 6181 5813 830 147 0 22 chr6 34874228 34874354 -154405200 - FLAM_C SINE Alu -187 125 1 736 180 7 13 chr6 34874354 34874504 -154405050 - L1MB3 LINE L1 -340 5831 5683 199 267 67 38 chr6 34875083 34875188 -154404366 - L2 LINE L2 -653 2661 2554 472 348 48 5 chr6 34876993 34877203 -154402351 + MIR SINE MIR 12 230 -32 433 311 30 7 chr6 34878442 34878577 -154400977 + MIR SINE MIR 16 153 -55 1126 138 0 0 chr6 34885394 34885561 -154393993 + AluSp SINE Alu 137 303 -10 220 293 80 0 chr6 34885703 34885778 -154393776 + MIR3 SINE MIR 124 204 -4 2353 83 3 0 chr6 34887955 34888257 -154391297 + AluY SINE Alu 1 303 -8 605 158 41 94 chr6 34888268 34888348 -154391206 - MIR SINE MIR -27 235 152 1351 112 79 0 chr6 34888348 34888563 -154390991 - MER46A DNA MER2_type -2 234 3 1844 155 7 23 chr6 34888563 34888732 -154390822 - AluSx SINE Alu -8 304 134 215 30 0 30 chr6 34888732 34888765 -154390789 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 2224 92 0 0 chr6 34888765 34889046 -154390508 - AluY SINE Alu -30 281 1 1844 155 7 23 chr6 34889046 34889184 -154390370 - AluSx SINE Alu -176 136 1 605 158 41 94 chr6 34889184 34889273 -154390281 - MIR SINE MIR -108 154 74 930 177 55 11 chr6 34890164 34890345 -154389209 + MER5A DNA MER1_type 1 189 0 2553 52 0 0 chr6 34890348 34890656 -154388898 + AluY SINE Alu 1 308 -3 233 194 15 75 chr6 34890693 34890760 -154388794 - MIR SINE MIR -64 144 82 349 130 19 0 chr6 34893417 34893471 -154386083 - L2 LINE L2 -13 3300 3246 2135 140 33 9 chr6 34893844 34894173 -154385381 + MER1B DNA MER1_type 1 337 0 416 241 247 0 chr6 34894347 34894509 -154385045 - MIR SINE MIR 0 262 61 801 169 15 0 chr6 34894682 34894812 -154384742 - AluJb SINE Alu -5 307 176 2130 115 3 3 chr6 34894947 34895251 -154384303 - AluSx SINE Alu -8 304 1 229 283 0 0 chr6 34895292 34895345 -154384209 - L2 LINE L2 -6 3307 3255 315 318 0 38 chr6 34898089 34898221 -154381333 + C-rich Low_complexity Low_complexity 3 129 0 237 115 33 33 chr6 34898226 34898287 -154381267 + CT-rich Low_complexity Low_complexity 3 63 0 21 57 0 0 chr6 34898570 34898605 -154380949 + GC_rich Low_complexity Low_complexity 1 35 0 597 177 65 24 chr6 34900872 34900996 -154378558 + FLAM_A SINE Alu 1 129 -4 243 79 0 0 chr6 34902801 34902839 -154376715 + (TTG)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr6 34902839 34902859 -154376695 + (TGG)n Simple_repeat Simple_repeat 3 22 0 2151 100 3 50 chr6 34906433 34906754 -154372800 + AluSp SINE Alu 1 306 -7 201 307 6 50 chr6 34912656 34912835 -154366719 + G-rich Low_complexity Low_complexity 2 172 0 376 290 145 8 chr6 34914244 34914375 -154365179 - L2 LINE L2 -4 3309 3161 383 172 16 0 chr6 34914390 34914454 -154365100 - MER5A DNA MER1_type 0 189 125 680 178 0 0 chr6 34914454 34914561 -154364993 + FLAM_C SINE Alu 1 107 -36 442 190 0 0 chr6 34914566 34914645 -154364909 - MER5A DNA MER1_type -51 138 60 377 301 283 12 chr6 34914744 34915077 -154364477 - L2 LINE L2 -292 2980 2560 413 311 130 34 chr6 34915812 34915999 -154363555 + MIR SINE MIR 2 218 -44 1389 157 63 47 chr6 34915999 34916136 -154363418 - MER33 DNA MER1_type -2261 324 191 2363 84 0 0 chr6 34916136 34916434 -154363120 - AluSg SINE Alu -12 298 1 1389 157 63 47 chr6 34916434 34916614 -154362940 - MER33 DNA MER1_type -2394 191 2 413 311 130 34 chr6 34916614 34916664 -154362890 + MIR SINE MIR 218 262 0 204 143 0 0 chr6 34916994 34917036 -154362518 + (CTG)n Simple_repeat Simple_repeat 3 44 0 188 345 0 0 chr6 34918571 34918626 -154360928 - MIR3 SINE MIR -8 200 146 1200 113 0 27 chr6 34922643 34922828 -154356726 - AluSp SINE Alu 0 313 134 189 0 0 0 chr6 34922828 34922849 -154356705 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2242 76 6 19 chr6 34922879 34923195 -154356359 - AluSx SINE Alu 0 312 1 2079 89 4 7 chr6 34923251 34923564 -154355990 + AluSg SINE Alu 1 312 0 2083 144 0 0 chr6 34925942 34926254 -154353300 + AluSx SINE Alu 1 312 0 261 273 39 0 chr6 34926366 34926443 -154353111 + L1MC4 LINE L1 7403 7482 -560 1079 61 0 0 chr6 34926444 34926576 -154352978 + AluSq/x SINE Alu 1 132 -180 2153 88 17 0 chr6 34926578 34926873 -154352681 + AluSx SINE Alu 1 300 -12 2093 94 7 0 chr6 34926873 34927149 -154352405 + AluSq SINE Alu 1 278 -35 180 0 0 0 chr6 34927153 34927173 -154352381 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 268 222 148 0 chr6 34927173 34927281 -154352273 + L1MC4 LINE L1 7615 7738 -304 414 225 7 20 chr6 34927342 34927458 -154352096 + L1MC4 LINE L1 7894 8009 -33 1879 128 40 0 chr6 34927458 34927731 -154351823 - AluJb SINE Alu -14 298 15 414 225 7 20 chr6 34927731 34927765 -154351789 + L1MC4 LINE L1 8009 8042 0 2093 98 17 0 chr6 34927778 34928073 -154351481 - AluSx SINE Alu -12 300 1 2265 62 0 7 chr6 34928117 34928406 -154351148 + AluY SINE Alu 1 287 -24 2207 106 3 3 chr6 34928442 34928745 -154350809 + AluY SINE Alu 1 303 -8 241 204 0 0 chr6 34928880 34928929 -154350625 + L2 LINE L2 2719 2767 -547 784 181 42 42 chr6 34928929 34928988 -154350566 + L1MB3 LINE L1 5946 6004 -179 198 0 0 0 chr6 34928988 34929010 -154350544 + (TA)n Simple_repeat Simple_repeat 2 23 0 2331 83 7 0 chr6 34929010 34929310 -154350244 - AluSp SINE Alu -11 302 1 784 181 42 42 chr6 34929310 34929487 -154350067 + L1MB3 LINE L1 6002 6183 0 979 273 154 8 chr6 34929491 34929962 -154349592 + L2 LINE L2 2771 3312 -1 616 192 73 0 chr6 34930151 34930302 -154349252 + L1MD3 LINE L1 7832 7993 -2 1976 127 28 0 chr6 34930950 34931234 -154348320 + AluSx SINE Alu 1 292 -20 1877 134 14 14 chr6 34931271 34931563 -154347991 - AluSx SINE Alu -19 293 2 748 259 86 14 chr6 34931563 34931783 -154347771 - MIR SINE MIR 0 262 27 1239 203 18 0 chr6 34931787 34932004 -154347550 + MER58A DNA MER1_type 2 222 -2 2239 95 3 0 chr6 34932057 34932352 -154347202 + AluSx SINE Alu 1 296 -16 213 108 0 0 chr6 34932844 34932881 -154346673 + (CA)n Simple_repeat Simple_repeat 1 37 0 268 283 8 50 chr6 34932881 34932992 -154346562 - MIR SINE MIR -122 140 33 225 163 0 0 chr6 34936444 34936493 -154343061 + C-rich Low_complexity Low_complexity 1 49 0 258 316 0 54 chr6 34936654 34936822 -154342732 + C-rich Low_complexity Low_complexity 4 162 0 198 103 0 0 chr6 34937638 34937667 -154341887 + (CCA)n Simple_repeat Simple_repeat 1 29 0 193 73 24 24 chr6 34937887 34937928 -154341626 + (CCG)n Simple_repeat Simple_repeat 2 42 0 252 363 0 0 chr6 34940775 34940866 -154338688 - L2 LINE L2 -43 3270 3180 2200 93 3 0 chr6 34940999 34941290 -154338264 + AluSq SINE Alu 1 292 -21 255 351 116 31 chr6 34941752 34942262 -154337292 + L2 LINE L2 2303 2855 -459 498 233 0 0 chr6 34942583 34942686 -154336868 + MER5B DNA MER1_type 1 103 -75 1382 167 29 78 chr6 34942694 34942831 -154336723 + AluJb SINE Alu 10 152 -160 1829 57 4 4 chr6 34942831 34943061 -154336493 + AluY SINE Alu 74 303 -8 2193 112 0 0 chr6 34943069 34943373 -154336181 + AluSx SINE Alu 1 304 -8 1382 167 29 78 chr6 34943373 34943532 -154336022 + AluJb SINE Alu 159 300 -12 420 139 38 13 chr6 34943532 34943611 -154335943 + MER5B DNA MER1_type 96 176 -2 2323 82 0 0 chr6 34944024 34944318 -154335236 + AluY SINE Alu 1 294 -17 2096 117 10 0 chr6 34944559 34944868 -154334686 - AluSq SINE Alu -1 312 1 770 122 8 16 chr6 34944868 34944985 -154334569 - FRAM SINE Alu -7 169 54 1744 148 9 49 chr6 34944994 34945178 -154334376 - AluSx SINE Alu 0 312 122 2194 77 0 35 chr6 34945178 34945489 -154334065 - AluY SINE Alu -11 300 1 2150 109 10 3 chr6 34945491 34945802 -154333752 - AluSq SINE Alu 0 313 1 1744 148 9 49 chr6 34945802 34945939 -154333615 - AluSx SINE Alu -191 121 1 1388 270 259 12 chr6 34945946 34946776 -154332778 + L2 LINE L2 675 1709 -1605 2295 77 24 0 chr6 34946918 34947215 -154332339 - AluSx SINE Alu -4 308 5 607 264 153 8 chr6 34947292 34947546 -154332008 + L2 LINE L2 1649 1939 -1375 341 311 18 86 chr6 34947547 34947769 -154331785 + PABL_B LTR ERV1 1 207 -460 1781 80 0 0 chr6 34947915 34948140 -154331414 - AluSp SINE Alu -88 225 1 416 218 30 10 chr6 34948140 34948241 -154331313 - L1M4 LINE L1 -511 5667 5565 2185 237 110 11 chr6 34948249 34949198 -154330356 + L1MDa LINE L1 34 1210 -5330 2063 122 3 0 chr6 34949207 34949501 -154330053 + AluSx SINE Alu 1 295 -17 2071 139 0 0 chr6 34949509 34949804 -154329750 + AluSx SINE Alu 1 295 -17 1020 114 49 204 chr6 34949835 34949913 -154329641 + AluJb SINE Alu 51 139 -173 276 30 0 0 chr6 34949913 34949946 -154329608 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1020 114 49 204 chr6 34949946 34950175 -154329379 + AluJb SINE Alu 139 310 -2 1485 186 87 41 chr6 34950177 34950260 -154329294 + L1MDa LINE L1 1203 1281 -5259 2136 113 7 3 chr6 34950260 34950569 -154328985 + AluSq SINE Alu 1 310 -3 1485 186 87 41 chr6 34950569 34950921 -154328633 + L1MDa LINE L1 1281 1658 -4882 833 152 78 29 chr6 34950916 34951120 -154328434 - L1M4 LINE L1 -751 5395 5182 * 2114 139 7 0 chr6 34951169 34951479 -154328075 - AluSx SINE Alu 0 312 1 388 127 14 0 chr6 34951479 34951550 -154328004 - L1M4 LINE L1 -948 5198 5127 1119 158 5 68 chr6 34951557 34951778 -154327776 + AluJo SINE Alu 87 293 -19 640 189 6 47 chr6 34951783 34951952 -154327602 - L1M4 LINE L1 -1022 5124 4963 * 1990 199 5 12 chr6 34951950 34952381 -154327173 - L1M4 LINE L1 -3118 3028 2601 702 238 65 0 chr6 34952385 34952553 -154327001 + LTR16A LTR ERVL 86 264 -186 283 291 8 68 chr6 34952671 34952788 -154326766 - L2 LINE L2 -620 2694 2585 2476 87 0 0 chr6 34952871 34953183 -154326371 - AluSx SINE Alu 0 312 1 1837 146 11 0 chr6 34953183 34953463 -154326091 - AluSx SINE Alu -29 283 1 205 360 0 0 chr6 34953576 34953662 -154325892 + L2 LINE L2 3182 3267 -5 2224 214 144 70 chr6 34954071 34954434 -154325120 - L2 LINE L2 -74 3239 2904 2017 111 27 0 chr6 34954434 34954732 -154324822 + AluY SINE Alu 5 310 -1 2224 214 144 70 chr6 34954732 34955021 -154324533 - L2 LINE L2 -409 2904 2638 2714 16 0 0 chr6 34955021 34955326 -154324228 - AluYb8 SINE Alu -13 305 1 2224 214 144 70 chr6 34955326 34955770 -154323784 - L2 LINE L2 -675 2638 2061 1725 167 3 3 chr6 34955843 34956142 -154323412 - AluJb SINE Alu -5 307 9 615 284 88 64 chr6 34957007 34957395 -154322159 + L1ME LINE L1 5311 5707 -414 2041 106 33 13 chr6 34957397 34957700 -154321854 + AluSx SINE Alu 3 311 -1 887 182 6 23 chr6 34957744 34957920 -154321634 + FRAM SINE Alu 1 165 -11 2053 221 9 27 chr6 34958055 34958128 -154321426 + L1MC4 LINE L1 7501 7574 -468 1918 105 59 3 chr6 34958128 34958414 -154321140 + AluSq SINE Alu 1 302 -11 2053 221 9 27 chr6 34958414 34958892 -154320662 + L1MC4 LINE L1 7574 8042 0 261 0 0 0 chr6 34960027 34960056 -154319498 + (CTG)n Simple_repeat Simple_repeat 2 30 0 301 262 41 35 chr6 34960949 34961094 -154318460 + GA-rich Low_complexity Low_complexity 2 147 0 550 318 27 18 chr6 34961923 34962143 -154317411 + MIR SINE MIR 8 229 -33 376 235 51 10 chr6 34962213 34962311 -154317243 - MIR SINE MIR -69 139 38 274 228 219 26 chr6 34964521 34964635 -154314919 - MER91C DNA MER1_type -2 138 3 940 227 100 0 chr6 34964918 34965138 -154314416 - MIR SINE MIR -19 243 2 804 253 10 10 chr6 34966313 34966511 -154313043 - MIR SINE MIR -1 261 64 244 261 15 0 chr6 34967087 34967152 -154312402 - MER91B DNA MER1_type -113 77 12 193 335 148 70 chr6 34967258 34967511 -154312043 - L2 LINE L2 0 3272 2993 2189 117 0 13 chr6 34967511 34967647 -154311907 + AluSx SINE Alu 1 137 -175 2002 93 0 0 chr6 34967647 34967916 -154311638 + AluY SINE Alu 35 303 -8 2189 117 0 13 chr6 34967916 34968095 -154311459 + AluSx SINE Alu 137 312 0 193 335 148 70 chr6 34968095 34968125 -154311429 - L2 LINE L2 -279 2993 2967 274 326 39 23 chr6 34968160 34968289 -154311265 - L2 LINE L2 -263 3009 2879 2032 104 7 0 chr6 34969022 34969300 -154310254 + AluSx SINE Alu 16 295 -17 391 240 58 16 chr6 34969300 34969421 -154310133 - L2 LINE L2 -20 3293 3168 456 67 0 0 chr6 34969433 34969493 -154310061 + (TA)n Simple_repeat Simple_repeat 2 61 0 219 277 10 40 chr6 34969983 34970084 -154309470 + G-rich Low_complexity Low_complexity 2 99 0 * 243 235 20 0 chr6 34970034 34970085 -154309469 + GA-rich Low_complexity Low_complexity 3 54 0 846 209 99 9 chr6 34970368 34970579 -154308975 + AluJb SINE Alu 82 311 -1 1954 101 21 31 chr6 34972315 34972652 -154306902 - AluSx SINE Alu 0 334 1 1944 118 0 4 chr6 34972672 34972982 -154306572 - AluSg SINE Alu 0 309 1 621 339 79 20 chr6 34973306 34973887 -154305667 + L2 LINE L2 2468 3089 -183 208 268 99 0 chr6 34973887 34973958 -154305596 - MIR SINE MIR -171 91 14 2215 112 45 52 chr6 34973989 34974051 -154305503 - L1MA4 LINE L1 0 6300 6239 2009 130 10 3 chr6 34974051 34974358 -154305196 - AluSx SINE Alu -1 311 3 2215 112 45 52 chr6 34974358 34974696 -154304858 - L1MA4 LINE L1 -61 6239 5903 6903 139 35 26 chr6 34974782 34975202 -154304352 - L1MA4 LINE L1 -380 5920 5505 1948 159 0 3 chr6 34975202 34975510 -154304044 - AluSx SINE Alu -5 307 1 6903 139 35 26 chr6 34975510 34975936 -154303618 - L1MA4 LINE L1 -795 5505 5085 1741 108 90 7 chr6 34975936 34976213 -154303341 - AluSg SINE Alu -10 300 1 6903 139 35 26 chr6 34976213 34976299 -154303255 - L1MA4 LINE L1 -1215 5085 5001 2079 107 0 44 chr6 34976299 34976617 -154302937 - AluSq SINE Alu -9 304 1 6903 139 35 26 chr6 34976617 34976730 -154302824 - L1MA4 LINE L1 -1299 5001 4891 2299 87 7 3 chr6 34976730 34977039 -154302515 + AluSg SINE Alu 1 310 0 6903 139 35 26 chr6 34977039 34977900 -154301654 - L1MA4 LINE L1 -1409 4891 3984 2133 99 0 30 chr6 34977911 34978213 -154301341 - AluSx SINE Alu -19 293 1 2412 84 0 0 chr6 34978383 34978693 -154300861 - AluSg SINE Alu 0 310 1 417 258 43 63 chr6 34978899 34979113 -154300441 + MIR SINE MIR 1 206 -44 389 333 47 0 chr6 34979134 34979263 -154300291 + L2 LINE L2 3137 3271 -1 2221 96 7 0 chr6 34980757 34981058 -154298496 + AluSp SINE Alu 1 303 -10 242 329 0 0 chr6 34981120 34981193 -154298361 - L1ME LINE L1 -321 5849 5777 214 293 80 0 chr6 34981200 34981275 -154298279 + MIR3 SINE MIR 124 204 -4 2330 83 3 0 chr6 34983452 34983754 -154295800 + AluY SINE Alu 1 303 -8 601 158 41 94 chr6 34983765 34983845 -154295709 - MIR SINE MIR -27 235 152 1368 112 79 0 chr6 34983845 34984060 -154295494 - MER46A DNA MER2_type -2 234 3 1813 155 7 23 chr6 34984060 34984229 -154295325 - AluSx SINE Alu -8 304 134 215 30 0 30 chr6 34984229 34984262 -154295292 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 2193 92 0 0 chr6 34984262 34984543 -154295011 - AluY SINE Alu -30 281 1 1302 155 0 15 chr6 34984481 34984681 -154294873 - AluSx SINE Alu -115 197 1 1813 155 7 23 chr6 34984543 34984681 -154294873 - AluSx SINE Alu -176 136 1 601 158 41 94 chr6 34984681 34984770 -154294784 - MIR SINE MIR -108 154 74 916 177 55 11 chr6 34985661 34985842 -154293712 + MER5A DNA MER1_type 1 189 0 2650 52 0 0 chr6 34985845 34986153 -154293401 + AluY SINE Alu 1 308 -3 227 194 15 75 chr6 34986190 34986257 -154293297 - MIR SINE MIR -64 144 82 352 130 19 0 chr6 34988914 34988968 -154290586 - L2 LINE L2 -13 3300 3246 2071 140 33 9 chr6 34989341 34989670 -154289884 + MER1B DNA MER1_type 1 337 0 404 235 247 0 chr6 34989844 34990006 -154289548 - MIR SINE MIR 0 262 61 770 169 15 0 chr6 34990179 34990309 -154289245 - AluJb SINE Alu -5 307 176 2188 115 3 3 chr6 34990444 34990748 -154288806 - AluSx SINE Alu -8 304 1 228 283 0 0 chr6 34990789 34990842 -154288712 - L2 LINE L2 -6 3307 3255 803 246 54 76 chr6 34992604 34993067 -154286487 - L1ME LINE L1 -2059 5749 5297 869 269 178 14 chr6 34993118 34993380 -154286174 + L2 LINE L2 2473 2691 -622 1690 143 29 25 chr6 34993380 34993691 -154285863 - AluJo SINE Alu 0 312 1 869 269 178 14 chr6 34993691 34994142 -154285412 + L2 LINE L2 2691 3312 -1 3939 121 40 0 chr6 34994247 34994359 -154285195 + L1PA16 LINE L1 5521 5627 -568 249 33 0 0 chr6 34994359 34994389 -154285165 + (TA)n Simple_repeat Simple_repeat 1 30 0 3939 121 40 0 chr6 34994389 34994926 -154284628 + L1PA16 LINE L1 5627 6195 0 310 309 68 19 chr6 34994969 34995131 -154284423 - L1ME LINE L1 -1098 5048 4879 304 262 119 0 chr6 34995131 34995215 -154284339 + MER106B DNA MER1_type 1 94 -965 304 29 0 0 chr6 34995251 34995285 -154284269 - L1P LINE L1 -1844 4302 4269 315 205 27 98 chr6 34995285 34995397 -154284157 + MER106B DNA MER1_type 906 1009 -50 376 269 119 73 chr6 34995397 34995851 -154283703 - L1ME LINE L1 -1370 4776 4302 13908 96 12 3 chr6 34996052 34998797 -154280757 - L1PA8 LINE L1 0 6487 3716 12388 124 9 60 chr6 34998797 35000412 -154279142 - L1PA8 LINE L1 -3609 2852 1322 2134 125 27 0 chr6 35000412 35000707 -154278847 - AluSg SINE Alu -7 303 1 12388 124 9 60 chr6 35000707 35001958 -154277596 - L1PA8 LINE L1 -5139 1322 8 231 228 0 0 chr6 35002133 35002190 -154277364 - L1M2 LINE L1 -3958 2891 2835 2016 148 0 19 chr6 35002428 35002746 -154276808 - AluSx SINE Alu 0 312 1 734 247 105 43 chr6 35002831 35003345 -154276209 - L1MEd LINE L1 -898 1592 948 371 130 0 0 chr6 35003458 35003512 -154276042 - MSTA-int LTR MaLR -1597 54 1 2315 104 149 8 chr6 35003512 35003887 -154275667 - MSTA LTR MaLR 0 428 1 916 37 0 0 chr6 35003887 35003994 -154275560 + MER66A-int LTR ERV1 6570 6676 0 1475 187 75 81 chr6 35004057 35004490 -154275064 + MER66A LTR ERV1 98 478 0 2685 110 49 53 chr6 35004490 35004509 -154275045 + L1MA8 LINE L1 5762 5780 -511 552 68 0 0 chr6 35004509 35004582 -154274972 + (TA)n Simple_repeat Simple_repeat 1 73 0 2685 110 49 53 chr6 35004582 35005088 -154274466 + L1MA8 LINE L1 5780 6285 -6 1671 184 14 0 chr6 35005236 35005524 -154274030 + AluJb SINE Alu 1 292 -20 240 208 92 42 chr6 35005531 35005651 -154273903 + L1MEc LINE L1 2151 2276 -4120 4631 105 18 1 chr6 35005692 35006356 -154273198 - L1PB1 LINE L1 -1 6150 5476 14095 187 13 13 chr6 35006920 35009959 -154269595 - L1PB1 LINE L1 -692 5459 2420 324 167 0 17 chr6 35010075 35010135 -154269419 + AluJ/FLAM SINE Alu 1 59 -243 1833 103 4 12 chr6 35010178 35010431 -154269123 + AluSq SINE Alu 55 305 -8 642 200 9 0 chr6 35010723 35010833 -154268721 + FLAM_A SINE Alu 5 115 -18 243 0 0 0 chr6 35010836 35010863 -154268691 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2321 85 3 3 chr6 35010907 35011200 -154268354 + AluY SINE Alu 1 293 -18 2274 110 3 0 chr6 35011205 35011504 -154268050 + AluSg SINE Alu 1 300 -10 2305 92 0 35 chr6 35011952 35012268 -154267286 + AluY SINE Alu 1 305 -6 203 387 95 15 chr6 35012506 35012780 -154266774 + L2 LINE L2 2973 3268 -4 184 336 92 30 chr6 35012984 35013246 -154266308 - L2 LINE L2 -349 2965 2688 390 242 124 54 chr6 35013520 35013818 -154265736 - L1ME4a LINE L1 -2 6119 5801 924 139 0 0 chr6 35014138 35014267 -154265287 + AluSg/x SINE Alu 137 265 -47 225 0 0 0 chr6 35014287 35014312 -154265242 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2331 94 0 16 chr6 35014312 35014619 -154264935 + AluSc SINE Alu 1 302 -7 1162 255 47 15 chr6 35014706 35015114 -154264440 + L1MDb LINE L1 754 1174 -5235 * 4297 26 37 0 chr6 35015110 35015618 -154263936 - L1PA4 LINE L1 -1130 5016 4490 7757 29 2 0 chr6 35015618 35016764 -154262790 + L1PA4 LINE L1 5007 6155 0 604 63 8 72 chr6 35016819 35016933 -154262621 + L1PA11 LINE L1 5007 6174 0 454 181 55 110 chr6 35016999 35017126 -154262428 + L1MDb LINE L1 1118 1341 -5065 * 32693 107 20 49 chr6 35017125 35018835 -154260719 + L1PA7 LINE L1 3 1762 -4392 2464 75 0 0 chr6 35018835 35019129 -154260425 + AluY SINE Alu 5 298 -13 32693 107 20 49 chr6 35019129 35023775 -154255779 + L1PA7 LINE L1 1762 6154 0 276 280 0 9 chr6 35023759 35023866 -154255688 + L1MDb LINE L1 1309 1414 -4995 * 1334 155 0 15 chr6 35023895 35024101 -154255453 - AluJb SINE Alu -28 284 82 1065 234 86 9 chr6 35024111 35024436 -154255118 + L1MDb LINE L1 1432 1781 -4625 1358 258 71 0 chr6 35024450 35024884 -154254670 + L1M4 LINE L1 4282 4746 -1400 2342 190 0 14 chr6 35024896 35025311 -154254243 + L1PA12 LINE L1 7 415 -7166 302 351 6 23 chr6 35025659 35025833 -154253721 + C-rich Low_complexity Low_complexity 5 175 0 210 347 7 28 chr6 35025996 35026140 -154253414 + (CACCC)n Simple_repeat Simple_repeat 1 141 0 * 335 259 7 58 chr6 35026043 35026182 -154253372 + C-rich Low_complexity Low_complexity 6 137 0 1602 175 60 30 chr6 35026610 35026941 -154252613 - MER58B DNA MER1_type 0 341 1 2079 117 3 3 chr6 35026977 35027292 -154252262 + AluSq SINE Alu 1 315 0 618 280 65 39 chr6 35027292 35027628 -154251926 + L1M4 LINE L1 3967 4311 -1835 517 203 123 44 chr6 35027627 35027943 -154251611 - HAL1 LINE L1 -1304 1203 863 * 206 333 8 8 chr6 35027967 35028084 -154251470 + L2 LINE L2 833 949 -2365 344 261 144 18 chr6 35028509 35028620 -154250934 - MER5A DNA MER1_type -1 188 64 575 279 97 6 chr6 35028933 35029098 -154250456 - MER5A DNA MER1_type -1 188 9 2281 114 0 7 chr6 35029274 35029582 -154249972 - AluSg SINE Alu -4 306 1 996 148 30 145 chr6 35030196 35030328 -154249226 - MER57-int LTR ERV1 -2941 3005 2859 2175 121 0 0 chr6 35030328 35030610 -154248944 + AluSc SINE Alu 1 282 -27 609 83 0 0 chr6 35030610 35030694 -154248860 + (TA)n Simple_repeat Simple_repeat 2 85 0 996 148 30 145 chr6 35030694 35031005 -154248549 - MER57-int LTR ERV1 -3085 2861 1027 1923 138 45 3 chr6 35031057 35031347 -154248207 + AluJo SINE Alu 1 302 -10 1958 164 44 109 chr6 35031399 35031856 -154247698 - MER57-int LTR ERV1 -4122 3415 2989 4317 138 50 42 chr6 35031871 35032685 -154246869 - MER57-int LTR ERV1 -2615 2265 767 2513 172 25 37 chr6 35032743 35033672 -154245882 - MER57-int LTR ERV1 -4464 1842 3 2396 83 3 0 chr6 35033730 35034019 -154245535 + AluSx SINE Alu 1 290 -22 504 262 0 27 chr6 35034056 35034205 -154245349 - LTR41 LTR ERVL -619 154 10 2319 111 0 0 chr6 35034260 35034557 -154244997 - AluSx SINE Alu -15 297 1 854 71 0 100 chr6 35035296 35035416 -154244138 + AluSg/x SINE Alu 185 291 -19 1684 123 110 48 chr6 35035416 35035552 -154244002 + AluSx SINE Alu 1 127 -185 2214 71 3 52 chr6 35035552 35035860 -154243694 + AluY SINE Alu 1 293 -18 1684 123 110 48 chr6 35035860 35036015 -154243539 + AluSx SINE Alu 127 310 -2 854 71 0 100 chr6 35036015 35036034 -154243520 + AluSg/x SINE Alu 291 310 0 297 381 0 0 chr6 35037691 35037859 -154241695 + (CCA)n Simple_repeat Simple_repeat 1 168 0 216 303 230 6 chr6 35040271 35040449 -154239105 - MIR SINE MIR -1 261 44 21 36 0 0 chr6 35040680 35040708 -154238846 + AT_rich Low_complexity Low_complexity 1 28 0 422 254 110 21 chr6 35041629 35041848 -154237706 - MER102b DNA MER1_type -4 337 92 3506 106 23 0 chr6 35042473 35042993 -154236561 + L1PA13 LINE L1 5627 6158 -5 1362 283 122 34 chr6 35043794 35044615 -154234939 - L2 LINE L2 -4 3309 2325 1981 138 15 50 chr6 35044747 35045144 -154234410 - L1MB8 LINE L1 -5 6173 5791 5687 111 11 3 chr6 35045222 35046629 -154232925 - L1PA13 LINE L1 -2 6161 4739 867 89 73 0 chr6 35046746 35046869 -154232685 - AluY SINE Alu -179 132 1 1961 129 4 0 chr6 35048105 35048405 -154231149 - AluSx SINE Alu 0 301 1 435 235 15 37 chr6 35048666 35048802 -154230752 - MER102b DNA MER1_type -4 337 205 1369 282 120 34 chr6 35050251 35051074 -154228480 - L2 LINE L2 -4 3309 2325 732 316 117 7 chr6 35052325 35052762 -154226792 - L2 LINE L2 -1009 2305 1821 231 36 0 0 chr6 35052901 35052929 -154226625 + (TA)n Simple_repeat Simple_repeat 2 29 0 413 268 75 114 chr6 35053011 35053558 -154225996 + L1MEd LINE L1 872 1528 -962 2850 117 29 22 chr6 35053569 35054058 -154225496 + L1MA3 LINE L1 5814 6305 0 351 335 27 8 chr6 35054061 35054260 -154225294 + L1M4c LINE L1 1543 1898 -845 338 145 0 14 chr6 35054371 35054412 -154225142 + (GGAGAA)n Simple_repeat Simple_repeat 5 46 -26 1797 172 26 0 chr6 35054412 35054714 -154224840 + AluJb SINE Alu 1 310 -2 338 145 0 14 chr6 35054714 35054741 -154224813 + (GGAGAA)n Simple_repeat Simple_repeat 46 72 0 303 348 27 39 chr6 35054911 35055043 -154224511 + L1M4c LINE L1 2232 2361 -4202 2654 7 0 0 chr6 35055043 35055329 -154224225 - AluYa5 SINE Alu -9 302 17 303 348 27 39 chr6 35055329 35055452 -154224102 + L1M4c LINE L1 2361 2484 -4079 21 82 0 0 chr6 35055452 35055501 -154224053 + AT_rich Low_complexity Low_complexity 1 49 0 2183 131 3 0 chr6 35055587 35055884 -154223670 + AluSq SINE Alu 1 298 -15 406 296 26 15 chr6 35056193 35056457 -154223097 + L1M4c LINE L1 2975 3241 -3141 213 121 0 0 chr6 35056906 35056939 -154222615 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 874 219 46 63 chr6 35057096 35057447 -154222107 - MER87 LTR ERV1 -1 540 196 1600 96 0 0 chr6 35057866 35058064 -154221490 + AluSx SINE Alu 1 198 -114 4171 75 49 8 chr6 35058064 35058674 -154220880 - PABL_A LTR ERV1 -25 635 1 361 127 25 0 chr6 35059449 35059528 -154220026 + CT-rich Low_complexity Low_complexity 2 82 0 983 196 53 46 chr6 35060012 35060446 -154219108 + L1MDa LINE L1 2552 2985 -3555 921 289 72 38 chr6 35060446 35060822 -154218732 - L2 LINE L2 -303 3010 2623 1999 155 3 7 chr6 35061187 35061491 -154218063 - AluJo SINE Alu -9 303 1 1051 192 104 0 chr6 35061491 35061666 -154217888 - MER58B DNA MER1_type -2118 302 92 387 0 0 0 chr6 35061666 35061709 -154217845 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1051 192 104 0 chr6 35061709 35061776 -154217778 - MER58B DNA MER1_type -2328 92 33 1675 150 35 24 chr6 35061943 35062230 -154217324 - AluJo SINE Alu -17 295 6 1899 133 17 23 chr6 35062337 35062637 -154216917 + AluJb SINE Alu 1 298 -14 886 135 0 0 chr6 35063903 35064029 -154215525 - FLAM_C SINE Alu -7 126 1 651 283 74 13 chr6 35064339 35064569 -154214985 - MIR SINE MIR -16 246 3 2262 105 7 0 chr6 35065074 35065368 -154214186 - AluSq SINE Alu -17 296 1 896 101 7 43 chr6 35065750 35065888 -154213666 - FLAM_C SINE Alu 0 133 1 24 32 0 0 chr6 35066271 35066302 -154213252 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr6 35067065 35067085 -154212469 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2573 66 3 0 chr6 35067522 35067827 -154211727 + AluSp SINE Alu 1 306 -7 801 196 136 18 chr6 35067936 35068156 -154211398 - MIR SINE MIR 0 262 17 2201 118 0 34 chr6 35068292 35068614 -154210940 - AluSx SINE Alu -1 311 1 1031 241 45 20 chr6 35068942 35069187 -154210367 + MIR SINE MIR 12 262 0 228 307 0 39 chr6 35070480 35070607 -154208947 + A-rich Low_complexity Low_complexity 3 124 0 217 294 35 12 chr6 35071035 35071120 -154208434 - L2 LINE L2 -30 3283 3197 263 319 228 11 chr6 35071862 35072147 -154207407 - L2 LINE L2 -1093 2221 1875 25 51 0 0 chr6 35072258 35072297 -154207257 + AT_rich Low_complexity Low_complexity 1 39 0 432 283 332 27 chr6 35072307 35072714 -154206840 + L3 LINE CR1 1045 1575 -2 203 152 0 0 chr6 35073043 35073076 -154206478 + GA-rich Low_complexity Low_complexity 2 34 0 606 95 12 0 chr6 35073329 35073413 -154206141 - AluSg/x SINE Alu -40 270 186 297 260 48 10 chr6 35074795 35074899 -154204655 + L1ME LINE L1 5634 5741 -380 26 30 0 0 chr6 35074953 35074986 -154204568 + AT_rich Low_complexity Low_complexity 1 33 0 2586 50 0 0 chr6 35076163 35076463 -154203091 - AluY SINE Alu -10 301 2 2234 89 0 23 chr6 35076464 35076766 -154202788 - AluSc SINE Alu -14 295 1 25 31 0 0 chr6 35077596 35077628 -154201926 + AT_rich Low_complexity Low_complexity 1 32 0 275 378 77 14 chr6 35077628 35077837 -154201717 - MIR SINE MIR -28 234 13 273 242 154 0 chr6 35077839 35077930 -154201624 + MIR3 SINE MIR 83 187 -21 1767 106 51 4 chr6 35078197 35078471 -154201083 + L1PA11 LINE L1 5888 6174 0 1155 232 21 1 chr6 35079839 35080153 -154199401 - MER57A LTR ERV1 0 403 106 2129 115 20 0 chr6 35080398 35080694 -154198860 - AluSx SINE Alu -10 302 1 2340 125 0 0 chr6 35084853 35085165 -154194389 - AluSx SINE Alu 0 312 1 21 0 0 0 chr6 35085219 35085240 -154194314 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr6 35085478 35085515 -154194039 + AT_rich Low_complexity Low_complexity 1 37 0 1372 160 49 65 chr6 35085852 35086220 -154193334 - L1MB5 LINE L1 0 6174 5813 1080 196 33 4 chr6 35086223 35086468 -154193086 - L1MC2 LINE L1 -5 6339 6088 21 82 0 0 chr6 35086544 35086593 -154192961 + AT_rich Low_complexity Low_complexity 1 49 0 250 262 107 33 chr6 35087102 35087224 -154192330 + L2 LINE L2 3183 3313 0 257 287 65 37 chr6 35087238 35087346 -154192208 - L2 LINE L2 -17 3296 3186 908 118 0 22 chr6 35088235 35088371 -154191183 + AluSc SINE Alu 1 133 -176 493 62 0 0 chr6 35088372 35088437 -154191117 - L1PA5 LINE L1 -288 5866 5802 1757 50 9 0 chr6 35088437 35088654 -154190900 + L1PA6 LINE L1 5927 6149 -5 1186 106 12 0 chr6 35088654 35088852 -154190702 + AluSc SINE Alu 124 323 0 309 345 68 34 chr6 35090835 35091041 -154188513 + MIR SINE MIR 12 224 -38 211 283 0 0 chr6 35091084 35091137 -154188417 + (TAG)n Simple_repeat Simple_repeat 1 53 0 6648 61 7 28 chr6 35091235 35093189 -154186365 + SVA Other Other 534 1384 -2 1684 205 80 53 chr6 35094115 35094603 -154184951 - MLT1F LTR MaLR 0 542 42 1611 158 3 68 chr6 35094740 35095050 -154184504 + AluJb SINE Alu 6 295 -17 352 259 86 17 chr6 35095565 35095681 -154183873 - L1ME2 LINE L1 0 6164 6041 1859 237 95 13 chr6 35095688 35096378 -154183176 - L1ME2 LINE L1 -176 5988 5243 861 288 43 26 chr6 35096379 35096914 -154182640 - L1ME2 LINE L1 -1635 4511 3968 201 108 0 54 chr6 35097014 35097051 -154182503 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 21 82 0 0 chr6 35097059 35097108 -154182446 + AT_rich Low_complexity Low_complexity 1 49 0 2293 224 31 19 chr6 35097192 35097875 -154181679 - L1M4 LINE L1 -933 5213 4523 45 35 3 0 chr6 35097932 35098029 -154181525 + AT_rich Low_complexity Low_complexity 1 66 0 304 185 40 6 chr6 35098095 35098268 -154181286 + (TA)n Simple_repeat Simple_repeat 2 180 0 1322 141 111 39 chr6 35098288 35098621 -154180933 - L1MA7 LINE L1 -68 6223 5867 257 0 30 0 chr6 35098705 35098738 -154180816 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 180 0 0 0 chr6 35099019 35099039 -154180515 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 301 304 59 8 chr6 35099165 35099402 -154180152 - L1M4 LINE L1 -1721 4425 4177 1022 329 50 27 chr6 35100023 35100304 -154179250 + L2 LINE L2 2530 2803 -510 1871 151 3 10 chr6 35100304 35100596 -154178958 - AluJo SINE Alu -22 290 1 1022 329 50 27 chr6 35100596 35100919 -154178635 + L2 LINE L2 2803 3151 -162 3418 155 38 49 chr6 35100919 35101755 -154177799 - LTR1 LTR ERV1 0 785 1 1522 149 20 0 chr6 35101757 35102006 -154177548 - HUERS-P2 LTR ERV1 -2 3086 2833 6288 127 12 5 chr6 35102082 35103057 -154176497 - HUERS-P2 LTR ERV1 -257 2831 1850 1334 202 80 29 chr6 35103057 35103084 -154176470 + L1M4 LINE L1 753 777 -5765 261 0 0 0 chr6 35103084 35103113 -154176441 + (CA)n Simple_repeat Simple_repeat 2 30 0 1334 202 80 29 chr6 35103113 35103598 -154175956 + L1M4 LINE L1 777 1336 -5206 896 279 63 6 chr6 35103597 35103916 -154175638 - L1M4c LINE L1 -4824 1560 1224 * 2384 128 30 10 chr6 35104415 35104813 -154174741 - L1PA15 LINE L1 -3 6162 5757 2213 106 3 10 chr6 35104912 35105213 -154174341 + AluSp SINE Alu 1 299 -14 195 42 0 0 chr6 35106479 35106503 -154173051 + (TC)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr6 35106915 35106936 -154172618 + (TA)n Simple_repeat Simple_repeat 2 22 0 240 103 51 0 chr6 35106981 35107020 -154172534 - Charlie7 DNA MER1_type -2522 90 50 2403 94 0 0 chr6 35107668 35107976 -154171578 + AluSg SINE Alu 1 308 -2 235 328 0 0 chr6 35108605 35108663 -154170891 + L2 LINE L2 3169 3226 -46 269 266 96 0 chr6 35109788 35109882 -154169672 - MIR SINE MIR -113 149 47 567 78 0 0 chr6 35110058 35110135 -154169419 + (TC)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr6 35110276 35110300 -154169254 + (CA)n Simple_repeat Simple_repeat 2 25 0 2453 58 10 10 chr6 35110566 35110875 -154168679 - AluY SINE Alu -2 309 1 2038 213 26 12 chr6 35111441 35111864 -154167690 + L1M3c LINE L1 1364 1792 -5704 655 213 15 0 chr6 35112019 35112155 -154167399 + L1M3c LINE L1 2030 2167 -5329 1791 191 7 0 chr6 35112170 35112464 -154167090 + AluJo SINE Alu 3 298 -14 2296 257 44 23 chr6 35112489 35114436 -154165118 + L1M3c LINE L1 2181 4018 -3547 1740 160 53 61 chr6 35114442 35114820 -154164734 + L1MA9 LINE L1 4862 5237 -909 2386 130 52 40 chr6 35114820 35115053 -154164501 - MSTC LTR MaLR 0 428 186 2600 39 3 0 chr6 35115053 35115359 -154164195 - AluY SINE Alu -4 307 1 2386 130 52 40 chr6 35115359 35115548 -154164006 - MSTC LTR MaLR -242 186 1 1740 160 53 61 chr6 35115548 35115644 -154163910 + L1MA9 LINE L1 5237 5332 -814 6548 55 4 0 chr6 35115671 35116485 -154163069 + L1PA5 LINE L1 5335 6151 -3 204 40 0 0 chr6 35116497 35116522 -154163032 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 4497 157 79 8 chr6 35116522 35116949 -154162605 + L1MA9 LINE L1 5324 5719 -593 261 57 0 0 chr6 35116949 35116984 -154162570 + (CA)n Simple_repeat Simple_repeat 2 36 0 4497 157 79 8 chr6 35116984 35117479 -154162075 + L1MA9 LINE L1 5719 6312 0 3242 31 0 0 chr6 35117549 35118224 -154161330 + L1PA5 LINE L1 4983 5657 -498 1865 10 0 0 chr6 35118224 35118453 -154161101 + L1PA3 LINE L1 5929 6159 0 4020 42 0 8 chr6 35118456 35118951 -154160603 + L1PA5 LINE L1 5662 6152 -2 214 294 22 33 chr6 35119204 35119296 -154160258 - MIR SINE MIR -6 256 166 414 289 235 7 chr6 35119341 35119490 -154160064 - MER91A DNA MER1_type 0 196 14 648 277 194 9 chr6 35119506 35119831 -154159723 + L2 LINE L2 2315 2699 -615 402 274 32 16 chr6 35119862 35119986 -154159568 - MIR SINE MIR -105 157 32 2064 129 0 0 chr6 35120627 35120921 -154158633 - AluSx SINE Alu -9 303 10 256 315 0 11 chr6 35121887 35121979 -154157575 + A-rich Low_complexity Low_complexity 2 92 0 22 35 0 0 chr6 35122330 35122359 -154157195 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 35122457 35122482 -154157072 + AT_rich Low_complexity Low_complexity 1 25 0 258 267 38 0 chr6 35122639 35122744 -154156810 - L1ME LINE L1 -352 5881 5773 460 307 73 72 chr6 35122919 35123436 -154156118 - L1ME LINE L1 -638 5593 5065 376 315 123 16 chr6 35123549 35124226 -154155328 - L1ME LINE L1 -1221 4994 4246 629 158 20 0 chr6 35124386 35124487 -154155067 - U6 snRNA snRNA -4 103 1 424 291 111 54 chr6 35124562 35124968 -154154586 - L1ME LINE L1 -3903 2493 2065 407 263 75 0 chr6 35125270 35125403 -154154151 - HAL1 LINE L1 -829 1678 1536 677 278 63 39 chr6 35125892 35126226 -154153328 - MLT1J2 LTR MaLR -44 406 65 1667 189 6 82 chr6 35126234 35126722 -154152832 - MLT1D LTR MaLR 0 505 55 310 276 25 44 chr6 35128590 35128730 -154150824 - MIR SINE MIR -66 142 1 25 90 0 0 chr6 35128823 35128890 -154150664 + AT_rich Low_complexity Low_complexity 1 67 0 448 351 117 7 chr6 35129345 35129776 -154149778 - L2 LINE L2 -171 3142 2658 302 229 122 46 chr6 35129796 35129927 -154149627 - L2 LINE L2 -2728 586 446 1424 140 10 0 chr6 35129981 35130188 -154149366 + AluJo SINE Alu 86 294 -18 1509 104 73 0 chr6 35130232 35130492 -154149062 - L1MA8 LINE L1 -5 6286 6008 1844 154 7 0 chr6 35130516 35130796 -154148758 - AluSx SINE Alu -28 284 3 424 326 119 44 chr6 35130814 35131108 -154148446 - L2 LINE L2 -2960 354 39 521 274 158 0 chr6 35131362 35131552 -154148002 - MIR SINE MIR -4 258 39 1558 180 22 7 chr6 35131865 35132143 -154147411 + AluJo SINE Alu 1 282 -30 1365 40 0 40 chr6 35132728 35132904 -154146650 + L1PA3 LINE L1 5984 6152 -3 32 0 0 0 chr6 35132904 35132936 -154146618 + AT_rich Low_complexity Low_complexity 1 32 0 216 325 98 26 chr6 35133928 35134193 -154145361 + L2 LINE L2 1463 1746 -1568 487 269 9 0 chr6 35134375 35134483 -154145071 + MIR SINE MIR 5 113 -149 1943 129 38 0 chr6 35134559 35134846 -154144708 + AluSx SINE Alu 1 298 -14 231 281 45 22 chr6 35135436 35135525 -154144029 + Charlie8 DNA MER1_type 1 91 -2326 2135 130 7 0 chr6 35135917 35136218 -154143336 + AluSx SINE Alu 1 303 -9 371 282 70 19 chr6 35136253 35136409 -154143145 - MER117 DNA MER1_type 0 197 34 338 294 33 0 chr6 35137154 35137246 -154142308 - MIR SINE MIR -56 152 58 529 100 12 0 chr6 35137443 35137523 -154142031 - L1MA5 LINE L1 -5 6295 6215 521 205 186 31 chr6 35138666 35138827 -154140727 + MER5A DNA MER1_type 4 189 0 473 195 0 13 chr6 35139219 35139296 -154140258 + AluJ/FLAM SINE Alu 2 77 -235 255 61 0 0 chr6 35139316 35139349 -154140205 + (TG)n Simple_repeat Simple_repeat 1 33 0 32 0 0 0 chr6 35140141 35140173 -154139381 + AT_rich Low_complexity Low_complexity 1 32 0 549 89 13 0 chr6 35140491 35140570 -154138984 - L1PA16 LINE L1 -9 6157 6078 31 44 0 0 chr6 35141480 35141525 -154138029 + AT_rich Low_complexity Low_complexity 1 45 0 2284 102 0 3 chr6 35141959 35142262 -154137292 - AluY SINE Alu -9 302 1 297 253 27 73 chr6 35142343 35142493 -154137061 - MIR SINE MIR -11 251 109 2086 106 0 11 chr6 35143726 35144009 -154135545 + AluSg SINE Alu 25 304 -6 1721 175 7 11 chr6 35144101 35144420 -154135134 + AluJo SINE Alu 1 318 0 3415 89 22 0 chr6 35145117 35145567 -154133987 - LTR46 LTR ERV1 0 460 1 2090 95 25 7 chr6 35146047 35146330 -154133224 + AluSx SINE Alu 1 288 -24 342 0 0 0 chr6 35146335 35146373 -154133181 + (TG)n Simple_repeat Simple_repeat 2 39 0 334 245 65 125 chr6 35147250 35147434 -154132120 - L2 LINE L2 -3 3269 3097 650 176 9 0 chr6 35147997 35148105 -154131449 + L1PB4 LINE L1 6034 6142 -14 1432 89 0 26 chr6 35148158 35148292 -154131262 + AluSg SINE Alu 1 130 -180 2280 113 0 3 chr6 35148292 35148593 -154130961 + AluSx SINE Alu 1 300 -12 1432 89 0 26 chr6 35148593 35148649 -154130905 + AluSg SINE Alu 130 186 -124 689 137 0 30 chr6 35149528 35149659 -154129895 + L1MA8 LINE L1 6161 6287 -4 279 310 143 50 chr6 35150322 35150622 -154128932 - MLT1L LTR MaLR -10 605 278 213 153 42 0 chr6 35150939 35151011 -154128543 + (TA)n Simple_repeat Simple_repeat 1 75 0 1879 168 0 0 chr6 35151412 35151716 -154127838 - AluSg SINE Alu -6 304 1 1382 227 20 3 chr6 35151782 35152081 -154127473 + L1MB8 LINE L1 5520 5823 -343 451 197 0 0 chr6 35152086 35152162 -154127392 + U1 snRNA snRNA 3 78 -87 660 226 0 0 chr6 35152162 35152299 -154127255 + L1PB4 LINE L1 6020 6156 0 1041 267 47 30 chr6 35152315 35152678 -154126876 + L1MB8 LINE L1 5808 6176 -2 2111 93 0 7 chr6 35152709 35152988 -154126566 + AluSg1 SINE Alu 2 278 -31 207 0 0 0 chr6 35152991 35153014 -154126540 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1983 147 0 13 chr6 35153019 35153332 -154126222 + AluSg SINE Alu 1 309 -1 320 319 62 27 chr6 35153347 35153399 -154126155 - L1 LINE L1 -1762 4384 4335 2480 152 43 14 chr6 35153399 35153813 -154125741 - MSTB LTR MaLR 0 426 1 320 319 62 27 chr6 35153813 35154730 -154124824 - L1 LINE L1 -1811 4335 3339 2874 249 105 57 chr6 35154742 35155134 -154124420 + L1MD2 LINE L1 1492 1864 -4676 1878 176 0 3 chr6 35155134 35155447 -154124107 - AluJb SINE Alu 0 312 1 2874 249 105 57 chr6 35155447 35156730 -154122824 + L1MD2 LINE L1 1864 3085 -3455 1918 119 0 17 chr6 35156730 35157025 -154122529 + AluSg SINE Alu 1 290 -20 1933 84 4 4 chr6 35157026 35157287 -154122267 + AluSc SINE Alu 1 261 -48 1548 50 0 0 chr6 35157290 35157469 -154122085 + AluY SINE Alu 7 185 -126 618 83 0 62 chr6 35157469 35157565 -154121989 + AluY SINE Alu 218 307 -4 2874 249 105 57 chr6 35157565 35157784 -154121770 + L1MD2 LINE L1 3086 3293 -3247 2201 95 20 0 chr6 35157784 35158079 -154121475 + AluSp SINE Alu 1 301 -12 2874 249 105 57 chr6 35158079 35158936 -154120618 + L1MD2 LINE L1 3293 4461 -2079 1637 227 62 83 chr6 35158944 35160008 -154119546 + L1MD2 LINE L1 4662 5695 -941 2376 80 0 13 chr6 35160008 35160307 -154119247 + AluY SINE Alu 1 295 -16 1637 227 62 83 chr6 35160307 35160562 -154118992 + L1MD2 LINE L1 5695 5954 -682 5692 89 100 0 chr6 35160570 35161321 -154118233 - LTR12 LTR ERV1 0 826 1 8175 93 4 13 chr6 35161321 35162450 -154117104 - HERV9 LTR ERV1 0 8399 7281 * 10535 105 9 10 chr6 35162439 35163911 -154115643 - HERV9 LTR ERV1 -5200 3199 1730 10101 125 13 13 chr6 35163913 35165435 -154114119 - HERV9 LTR ERV1 -6877 1522 1 2164 82 241 173 chr6 35165454 35166002 -154113552 - LTR12 LTR ERV1 -129 585 1 2332 219 48 20 chr6 35166004 35166565 -154112989 + L1MD2 LINE L1 5961 6537 -216 451 288 38 6 chr6 35166563 35166723 -154112831 + L1MD3 LINE L1 7831 7995 0 * 973 156 21 0 chr6 35166736 35166915 -154112639 + L1MC2 LINE L1 5465 5657 -687 1182 188 43 27 chr6 35166943 35167199 -154112355 + L1MC2 LINE L1 6060 6319 -25 6874 116 4 9 chr6 35167270 35168244 -154111310 - LTR5 LTR ERVK 0 969 1 24 0 0 0 chr6 35168266 35168290 -154111264 + AT_rich Low_complexity Low_complexity 1 24 0 1545 158 75 19 chr6 35168476 35168741 -154110813 - MER51A LTR ERV1 -352 282 3 2637 183 25 0 chr6 35168743 35169225 -154110329 + L1MC2 LINE L1 5567 6060 -284 253 189 0 0 chr6 35169229 35169266 -154110288 - LOR1a LTR ERV1 0 497 461 2361 189 15 22 chr6 35169266 35169720 -154109834 - LOR1b LTR ERV1 -10 451 1 1042 195 27 46 chr6 35169723 35169929 -154109625 + L1MC2 LINE L1 6065 6266 -78 2884 7 0 0 chr6 35169929 35170237 -154109317 - AluYa5 SINE Alu -3 308 1 1042 195 27 46 chr6 35170237 35170292 -154109262 + L1MC2 LINE L1 6266 6321 -23 3162 178 117 89 chr6 35170384 35171331 -154108223 - MER52A LTR ERV1 -516 1239 270 796 140 70 14 chr6 35172072 35172265 -154107289 - AluJb SINE Alu 0 361 161 353 337 47 32 chr6 35172889 35173079 -154106475 + MIR SINE MIR 51 243 -19 26 82 0 0 chr6 35173224 35173285 -154106269 + AT_rich Low_complexity Low_complexity 1 61 0 1829 158 0 7 chr6 35173515 35173819 -154105735 + AluY SINE Alu 1 302 -9 230 302 174 35 chr6 35174206 35174378 -154105176 - MIR3 SINE MIR -7 201 6 290 194 14 0 chr6 35175735 35175807 -154103747 - MER116 DNA Mariner -6 74 2 1591 201 7 0 chr6 35176087 35176376 -154103178 - AluJb SINE Alu -19 293 3 606 307 112 67 chr6 35176618 35177138 -154102416 - L2 LINE L2 -18 3295 2800 2171 123 0 16 chr6 35177138 35177454 -154102100 - AluSq SINE Alu 0 313 3 606 307 112 67 chr6 35177454 35177539 -154102015 - L2 LINE L2 -513 2800 2720 2049 115 0 4 chr6 35177539 35177817 -154101737 - AluSc SINE Alu -32 277 1 606 307 112 67 chr6 35177817 35178629 -154100925 - L2 LINE L2 -593 2720 1813 346 208 15 5 chr6 35179846 35179968 -154099586 - MER53 DNA DNA 0 189 1 905 192 45 17 chr6 35180735 35180912 -154098642 + MER20 DNA MER1_type 31 212 -7 228 323 106 42 chr6 35180919 35181343 -154098211 - Tigger4(Zombi) DNA MER2_type -1877 854 404 279 328 68 101 chr6 35181606 35182184 -154097370 + L2 LINE L2 2715 3269 -3 288 106 0 0 chr6 35182901 35182909 -154096645 + (GA)n Simple_repeat Simple_repeat 1 8 -39 261 0 0 0 chr6 35182909 35182938 -154096616 + (TG)n Simple_repeat Simple_repeat 1 29 0 288 106 0 0 chr6 35182938 35182976 -154096578 + (GA)n Simple_repeat Simple_repeat 7 47 0 23 0 0 0 chr6 35183681 35183704 -154095850 + AT_rich Low_complexity Low_complexity 1 23 0 454 292 81 11 chr6 35184670 35184855 -154094699 - MIR SINE MIR -57 205 8 329 250 0 25 chr6 35185773 35185853 -154093701 + MIR SINE MIR 50 127 -135 1638 106 7 66 chr6 35186747 35187021 -154092533 + LTR12 LTR ERV1 1 258 -456 254 316 53 0 chr6 35187021 35187135 -154092419 + LTR30 LTR ERV1 524 643 -79 734 109 0 0 chr6 35187136 35187237 -154092317 + LTR12 LTR ERV1 481 581 -133 210 91 0 0 chr6 35187857 35187890 -154091664 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 645 136 16 24 chr6 35187936 35188061 -154091493 + L1MA8 LINE L1 6164 6287 -4 328 348 96 14 chr6 35188774 35189067 -154090487 - MLT1L LTR MaLR -76 539 223 255 125 0 0 chr6 35189343 35189391 -154090163 + LTR66 LTR ERVL 394 441 -169 259 287 23 0 chr6 35189401 35189488 -154090066 - L1MC4 LINE L1 -1339 6703 6615 228 236 36 0 chr6 35189440 35189495 -154090059 + L1MD3 LINE L1 6612 6668 -1327 * 21 36 0 0 chr6 35189737 35189765 -154089789 + AT_rich Low_complexity Low_complexity 1 28 0 1203 257 24 3 chr6 35189970 35190262 -154089292 + L1MB8 LINE L1 5520 5817 -349 379 224 0 0 chr6 35190273 35190349 -154089205 + U1 snRNA snRNA 3 78 -87 650 241 0 0 chr6 35190349 35190486 -154089068 + L1PB4 LINE L1 6020 6156 0 933 248 51 39 chr6 35190487 35190818 -154088736 + L1MB8 LINE L1 5812 6146 -32 257 305 62 12 chr6 35191107 35191319 -154088235 + L1MC/D LINE L1 5308 5529 -712 1081 257 59 32 chr6 35192370 35192927 -154086627 + L1M4 LINE L1 2587 3158 -2988 1199 174 31 9 chr6 35192972 35193196 -154086358 - MSTB LTR MaLR 0 426 198 1017 289 70 30 chr6 35193206 35193735 -154085819 - L1M4 LINE L1 -2208 3938 3389 2846 216 129 38 chr6 35193827 35194231 -154085323 + L1MDa LINE L1 1492 1858 -4682 1832 161 0 37 chr6 35194231 35194554 -154085000 - AluJb SINE Alu -1 311 1 2846 216 129 38 chr6 35194554 35195210 -154084344 + L1MDa LINE L1 1858 2649 -3891 694 225 236 30 chr6 35195240 35195511 -154084043 - MER52A LTR ERV1 -1208 547 221 318 310 76 47 chr6 35196357 35196528 -154083026 + MIR SINE MIR 68 243 -19 241 344 21 11 chr6 35197413 35197506 -154082048 - MIR SINE MIR -94 114 21 313 208 13 0 chr6 35198877 35198954 -154080600 - MER116 DNA Mariner -1 79 2 1559 191 28 0 chr6 35199234 35199522 -154080032 - AluJb SINE Alu -16 296 1 21 57 0 0 chr6 35199537 35199572 -154079982 + AT_rich Low_complexity Low_complexity 1 35 0 2238 118 3 0 chr6 35199582 35199887 -154079667 + AluSc SINE Alu 1 306 -3 826 321 150 36 chr6 35200087 35201419 -154078135 - L2 LINE L2 -17 3296 1813 239 313 12 12 chr6 35201636 35201716 -154077838 - L2 LINE L2 -5 3308 3229 345 167 25 6 chr6 35202634 35202746 -154076808 - MER53 DNA DNA -1 188 9 935 196 39 17 chr6 35203505 35203684 -154075870 + MER20 DNA MER1_type 30 212 -7 2120 94 3 11 chr6 35203731 35204046 -154075508 - AluY SINE Alu 0 313 1 2322 178 33 7 chr6 35204170 35204591 -154074963 + LTR3 LTR ERVK 1 432 0 23100 115 28 7 chr6 35204591 35206138 -154073416 + HERVK3 LTR ERVK 1 1514 -5729 2310 85 7 7 chr6 35206138 35206433 -154073121 - AluY SINE Alu -16 295 1 23100 115 28 7 chr6 35206433 35208264 -154071290 + HERVK3 LTR ERVK 1514 3451 -3792 2276 94 0 3 chr6 35208265 35208572 -154070982 + AluY SINE Alu 1 306 -5 21 0 0 0 chr6 35208662 35208683 -154070871 + AT_rich Low_complexity Low_complexity 1 21 0 1932 131 10 0 chr6 35208956 35209246 -154070308 + AluY SINE Alu 1 293 -18 197 331 175 19 chr6 35209631 35209791 -154069763 - MIR3 SINE MIR -4 204 20 308 208 13 0 chr6 35211166 35211243 -154068311 - MER116 DNA Mariner -1 79 2 1492 215 7 0 chr6 35211514 35211807 -154067747 - AluJb SINE Alu -15 297 3 22 0 0 0 chr6 35211825 35211847 -154067707 + AT_rich Low_complexity Low_complexity 1 22 0 598 316 63 71 chr6 35212033 35212584 -154066970 - L2 LINE L2 -1 3312 2766 2071 132 3 7 chr6 35212595 35212905 -154066649 - AluSq SINE Alu -4 309 1 20855 36 8 0 chr6 35212997 35216153 -154063401 + L1PA4 LINE L1 2993 6155 0 720 108 0 0 chr6 35216160 35216253 -154063301 - AluSg SINE Alu -9 303 211 1133 86 0 0 chr6 35216253 35216392 -154063162 - AluSg SINE Alu -170 140 2 964 307 124 41 chr6 35216619 35217218 -154062336 - L2 LINE L2 0 3313 2765 9669 29 11 0 chr6 35217218 35218277 -154061277 + MER11C LTR ERVK 1 1071 0 964 307 124 41 chr6 35218277 35219086 -154060468 - L2 LINE L2 -548 2765 1776 248 378 9 9 chr6 35219263 35219374 -154060180 - L2 LINE L2 0 3313 3203 215 279 73 15 chr6 35219480 35219548 -154060006 - MIR SINE MIR -79 129 58 190 348 128 12 chr6 35219845 35220009 -154059545 - MIR SINE MIR -69 193 11 389 133 8 6 chr6 35220249 35220370 -154059184 - MER53 DNA DNA -1 188 2 2207 159 27 30 chr6 35220648 35221013 -154058541 - THE1B LTR MaLR 0 364 1 711 216 148 6 chr6 35221462 35221624 -154057930 + MER20 DNA MER1_type 29 213 -6 285 285 107 67 chr6 35221638 35222013 -154057541 - Tigger4(Zombi) DNA MER2_type -1885 846 457 2971 90 11 0 chr6 35222016 35222394 -154057160 + L1PA10 LINE L1 5777 6158 -10 214 284 27 0 chr6 35222505 35222579 -154056975 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 233 343 64 101 chr6 35222764 35223313 -154056241 + L2 LINE L2 2739 3267 -5 10860 174 5 21 chr6 35224464 35224803 -154054751 - L1PA15 LINE L1 -1 6164 5821 4938 74 115 124 chr6 35224803 35225636 -154053918 + LTR12 LTR ERV1 1 826 0 10860 174 5 21 chr6 35225636 35226241 -154053313 - L1PA15 LINE L1 -344 5821 5208 2657 147 58 14 chr6 35226241 35226670 -154052884 - MER83 LTR ERV1 0 448 1 10860 174 5 21 chr6 35226670 35227806 -154051748 - L1PA15 LINE L1 -957 5208 4055 1932 123 3 48 chr6 35227806 35228115 -154051439 + AluSc SINE Alu 1 295 -14 10860 174 5 21 chr6 35228115 35228266 -154051288 - L1PA15 LINE L1 -2110 4055 3903 2154 104 4 0 chr6 35228266 35228545 -154051009 - AluSc SINE Alu -15 294 15 10860 174 5 21 chr6 35228545 35229115 -154050439 - L1PA15 LINE L1 -2262 3903 3389 2586 114 31 14 chr6 35229130 35229488 -154050066 - THE1B LTR MaLR 0 364 1 11379 102 8 10 chr6 35229488 35230466 -154049088 - THE1B-int LTR MaLR 0 1580 606 2361 86 14 0 chr6 35230466 35230758 -154048796 + AluY SINE Alu 1 296 -15 11379 102 8 10 chr6 35230758 35231350 -154048204 - THE1B-int LTR MaLR -974 606 14 2441 136 37 14 chr6 35231351 35231705 -154047849 - THE1B LTR MaLR -2 362 1 10806 184 7 14 chr6 35231705 35233800 -154045754 + L1P LINE L1 2455 4535 -1611 2277 112 0 6 chr6 35233800 35234112 -154045442 + AluSx SINE Alu 3 312 0 10806 184 7 14 chr6 35234112 35234153 -154045401 + L1P LINE L1 4535 4575 -1571 811 137 43 26 chr6 35234170 35234479 -154045075 + CT-rich Low_complexity Low_complexity 1 314 0 * 882 138 6 22 chr6 35234456 35234637 -154044917 + (TTCC)n Simple_repeat Simple_repeat 2 179 0 1122 170 121 106 chr6 35234654 35234833 -154044721 - AluJo SINE Alu -15 287 101 2375 96 0 0 chr6 35234833 35235126 -154044428 + AluSc SINE Alu 1 293 -16 1122 170 121 106 chr6 35235126 35235228 -154044326 - AluJo SINE Alu -201 101 2 2305 201 43 111 chr6 35235230 35235930 -154043624 + L1MD2 LINE L1 5577 6228 -14 4669 170 43 14 chr6 35235932 35236784 -154042770 + L1MC2 LINE L1 5457 6333 -11 2602 57 0 10 chr6 35236795 35237109 -154042445 - AluY SINE Alu 0 311 1 2434 82 3 0 chr6 35237313 35237617 -154041937 - AluSc SINE Alu -4 305 1 278 321 98 5 chr6 35237761 35237945 -154041609 - MIR SINE MIR -26 236 36 181 301 88 37 chr6 35241768 35241904 -154037650 + MIR SINE MIR 54 196 -66 2363 85 0 3 chr6 35242344 35242651 -154036903 - AluSc SINE Alu -3 306 1 216 0 0 0 chr6 35243414 35243438 -154036116 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 2487 81 3 0 chr6 35244641 35244950 -154034604 - AluSg SINE Alu 0 310 1 2261 84 0 44 chr6 35245265 35245585 -154033969 - AluY SINE Alu -5 306 1 342 123 0 0 chr6 35248088 35248145 -154031409 + (TG)n Simple_repeat Simple_repeat 2 58 0 3152 53 55 2 chr6 35249227 35249624 -154029930 - L1PA8 LINE L1 -5 6167 5750 267 211 58 0 chr6 35250846 35250898 -154028656 + Tigger5 DNA MER2_type 1 55 -2268 * 568 151 38 9 chr6 35250890 35250996 -154028558 + Tigger5 DNA MER2_type 2215 2323 0 223 288 91 35 chr6 35251241 35251355 -154028199 - MIR SINE MIR -65 143 44 35 41 0 0 chr6 35251736 35251785 -154027769 + AT_rich Low_complexity Low_complexity 1 49 0 2858 265 72 6 chr6 35252788 35253612 -154025942 + L1MDa LINE L1 3 880 -5660 488 134 0 0 chr6 35253633 35253700 -154025854 + MLT1A2 LTR MaLR 242 308 -66 4418 180 25 7 chr6 35253700 35253918 -154025636 + MER6 DNA MER2_type 1 214 -651 330 26 0 0 chr6 35253918 35253957 -154025597 + (TG)n Simple_repeat Simple_repeat 2 40 0 4418 180 25 7 chr6 35253957 35254506 -154025048 + MER6 DNA MER2_type 214 782 -83 741 168 198 51 chr6 35254538 35254735 -154024819 + MER1B DNA MER1_type 114 339 0 646 141 0 0 chr6 35254735 35254827 -154024727 + MER6 DNA MER2_type 770 861 -4 870 218 40 110 chr6 35254907 35255261 -154024293 + MLT2D LTR ERVL 86 414 0 1258 172 43 27 chr6 35255262 35255703 -154023851 + L1MD2 LINE L1 5855 6357 -2 881 217 148 0 chr6 35255833 35256022 -154023532 + Tigger5 DNA MER2_type 10 226 -2097 489 190 0 0 chr6 35256018 35256097 -154023457 + Tigger5 DNA MER2_type 2245 2323 0 * 265 261 112 30 chr6 35256190 35256324 -154023230 - LTR33A LTR ERVL -29 494 350 3092 151 53 22 chr6 35256786 35257272 -154022282 - MER89 LTR ERV1 0 559 53 2367 77 3 3 chr6 35257272 35257569 -154021985 - AluSc SINE Alu -12 297 1 3092 151 53 22 chr6 35257569 35257624 -154021930 - MER89 LTR ERV1 -506 53 1 11998 123 40 14 chr6 35258607 35260347 -154019207 - Tigger3(Golem) DNA MER2_type -1 3028 1335 459 0 0 0 chr6 35260347 35260398 -154019156 + (TA)n Simple_repeat Simple_repeat 1 51 0 2375 91 10 0 chr6 35260398 35260695 -154018859 - AluY SINE Alu -11 300 1 11998 123 40 14 chr6 35260695 35260865 -154018689 - Tigger3(Golem) DNA MER2_type -1693 1336 1067 2938 56 23 42 chr6 35260867 35261299 -154018255 + L1P LINE L1 2941 3364 -2782 * 4215 98 7 0 chr6 35261295 35261878 -154017676 + L1P LINE L1 2343 2929 -3217 402 229 57 19 chr6 35261878 35261983 -154017571 + LTR19C LTR ERV1 671 779 0 1563 159 12 0 chr6 35261983 35262234 -154017320 + L1MB1 LINE L1 5914 6167 -1 289 286 14 0 chr6 35262259 35262329 -154017225 - L1ME LINE L1 -5990 80 10 24 53 0 0 chr6 35263032 35263070 -154016484 + AT_rich Low_complexity Low_complexity 1 38 0 3012 119 47 7 chr6 35263895 35264342 -154015212 + MER4C LTR ERV1 1 465 0 867 118 183 7 chr6 35264431 35264584 -154014970 + MER4C LTR ERV1 284 463 -2 2514 48 0 0 chr6 35264839 35265131 -154014423 + AluY SINE Alu 1 292 -19 299 322 142 22 chr6 35265210 35265664 -154013890 - L1ME LINE L1 -398 5764 5255 845 306 116 18 chr6 35265716 35266287 -154013267 + L2 LINE L2 1632 2258 -1056 889 252 156 15 chr6 35266297 35266765 -154012789 - L1ME LINE L1 -1393 4753 4220 24 32 0 0 chr6 35266879 35266910 -154012644 + AT_rich Low_complexity Low_complexity 1 31 0 3340 90 5 0 chr6 35267107 35267553 -154012001 + MER41B LTR ERV1 1 448 -187 217 183 14 14 chr6 35267798 35267869 -154011685 + CT-rich Low_complexity Low_complexity 1 71 0 2207 113 0 0 chr6 35268665 35268980 -154010574 - AluSx SINE Alu 0 315 1 416 200 32 8 chr6 35269162 35269287 -154010267 + CT-rich Low_complexity Low_complexity 3 130 0 213 316 46 69 chr6 35269841 35270015 -154009539 - MIR SINE MIR -62 200 31 286 309 187 8 chr6 35271630 35271753 -154007801 + MIR3 SINE MIR 3 147 -61 203 258 124 10 chr6 35272702 35272799 -154006755 - MIR SINE MIR -18 190 82 3644 2 0 0 chr6 35272912 35273309 -154006245 - L1HS LINE L1 -2 6153 5757 2907 29 0 0 chr6 35273306 35273656 -154005898 + L1P LINE L1 4958 5307 -839 * 902 200 62 26 chr6 35274255 35274450 -154005104 - MER20 DNA MER1_type -13 206 5 2035 147 84 3 chr6 35275794 35276140 -154003414 - LTR44 LTR ERV1 -8 511 138 2006 139 37 6 chr6 35276133 35276457 -154003097 - LTR64 LTR ERVK -224 334 1 * 443 253 43 54 chr6 35276877 35277056 -154002498 + MIR SINE MIR 55 229 -33 21 0 0 0 chr6 35277223 35277244 -154002310 + AT_rich Low_complexity Low_complexity 1 21 0 207 88 0 0 chr6 35277935 35277969 -154001585 + (A)n Simple_repeat Simple_repeat 1 34 0 357 319 103 26 chr6 35279807 35280080 -153999474 - MLT1L LTR MaLR -76 539 246 231 36 0 0 chr6 35280362 35280390 -153999164 + (CA)n Simple_repeat Simple_repeat 2 29 0 210 213 0 21 chr6 35280390 35280431 -153999123 + (TA)n Simple_repeat Simple_repeat 1 40 0 1246 259 17 3 chr6 35280876 35281173 -153998381 + L1MB8 LINE L1 5523 5823 -343 420 197 0 0 chr6 35281178 35281249 -153998305 + U1 snRNA snRNA 3 73 -92 599 234 7 7 chr6 35281251 35281388 -153998166 + L1PB4 LINE L1 6020 6156 0 962 288 45 14 chr6 35281395 35281753 -153997801 + L1MB8 LINE L1 5808 6176 -2 250 309 48 0 chr6 35281971 35282097 -153997457 + L1P5 LINE L1 5308 5439 -712 1121 263 42 39 chr6 35283253 35283796 -153995758 + L1M4 LINE L1 2581 3125 -3021 1091 313 61 18 chr6 35283821 35283868 -153995686 - L1M4 LINE L1 -1767 4379 4335 2458 167 33 17 chr6 35283868 35284287 -153995267 - MSTB LTR MaLR 0 426 1 1091 313 61 18 chr6 35284287 35285204 -153994350 - L1M4 LINE L1 -1811 4335 3336 2979 206 125 34 chr6 35285216 35285619 -153993935 + L1MDa LINE L1 1492 1857 -4683 1832 182 0 3 chr6 35285619 35285932 -153993622 - AluJb SINE Alu 0 312 1 2979 206 125 34 chr6 35285932 35286589 -153992965 + L1MDa LINE L1 1857 2649 -3891 669 194 41 70 chr6 35286619 35286892 -153992662 - MER52A LTR ERV1 -681 597 221 221 197 16 16 chr6 35287614 35287675 -153991879 + CT-rich Low_complexity Low_complexity 4 64 0 279 345 64 35 chr6 35287735 35287906 -153991648 + MIR SINE MIR 68 243 -19 264 310 161 23 chr6 35288727 35288901 -153990653 - MIR3 SINE MIR -4 204 7 281 179 15 15 chr6 35290242 35290309 -153989245 - MER116 DNA Mariner -8 72 6 1619 184 28 0 chr6 35290593 35290881 -153988673 - AluJb SINE Alu -16 296 1 2187 109 3 3 chr6 35290945 35291247 -153988307 + AluSc SINE Alu 1 302 -7 934 307 152 44 chr6 35291425 35292781 -153986773 - L2 LINE L2 -1 3312 1813 268 266 26 35 chr6 35293310 35293423 -153986131 + (TCTCTG)n Simple_repeat Simple_repeat 3 114 0 180 97 0 0 chr6 35293580 35293611 -153985943 + (TG)n Simple_repeat Simple_repeat 2 32 0 234 139 0 0 chr6 35293669 35293705 -153985849 - MLT1K LTR MaLR -411 177 142 25 31 0 0 chr6 35295402 35295434 -153984120 + AT_rich Low_complexity Low_complexity 1 32 0 3307 145 61 30 chr6 35295502 35295657 -153983897 - L1MA7 LINE L1 -2 6289 6140 1306 210 52 6 chr6 35295657 35295986 -153983568 - MER2 DNA MER2_type 0 344 1 3307 145 61 30 chr6 35295986 35296067 -153983487 - L1MA7 LINE L1 -151 6140 6063 1657 174 32 0 chr6 35296067 35296349 -153983205 - AluJb SINE Alu -21 291 1 3307 145 61 30 chr6 35296349 35296786 -153982768 - L1MA7 LINE L1 -228 6063 5594 1073 83 0 0 chr6 35296826 35296959 -153982595 + AluSg SINE Alu 5 137 -173 6216 44 14 23 chr6 35296967 35297804 -153981750 + SVA Other Other 596 1425 0 294 53 53 0 chr6 35297861 35297918 -153981636 + A-rich Low_complexity Low_complexity 1 60 0 1161 122 0 0 chr6 35297918 35298074 -153981480 + AluSg SINE Alu 118 273 -37 876 279 24 20 chr6 35298185 35298482 -153981072 + LTR16A LTR ERVL 22 319 -131 214 290 48 16 chr6 35299415 35299477 -153980077 + L2 LINE L2 3134 3197 -75 417 226 78 39 chr6 35299886 35300090 -153979464 - L1MC5 LINE L1 -109 7852 7641 266 53 70 0 chr6 35300168 35300225 -153979329 + CT-rich Low_complexity Low_complexity 2 62 0 250 224 0 0 chr6 35300250 35300308 -153979246 - L1MC5 LINE L1 -519 7442 7385 216 0 0 0 chr6 35300496 35300520 -153979034 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1239 180 52 29 chr6 35300523 35300795 -153978759 - AluJo SINE Alu -30 282 5 345 82 0 0 chr6 35301191 35301240 -153978314 + (CA)n Simple_repeat Simple_repeat 2 50 0 189 0 0 0 chr6 35301412 35301433 -153978121 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 3363 30 0 0 chr6 35301441 35301838 -153977716 - L1PA4 LINE L1 -3 6152 5756 1963 134 10 6 chr6 35301838 35301903 -153977651 - L1MC1 LINE L1 -6 6327 6264 1879 149 41 56 chr6 35301903 35302245 -153977309 + MER1B DNA MER1_type 1 337 0 1963 134 10 6 chr6 35302245 35302492 -153977062 - L1MC1 LINE L1 -69 6264 6013 27 0 0 0 chr6 35302895 35302922 -153976632 + AT_rich Low_complexity Low_complexity 1 27 0 320 285 123 15 chr6 35302948 35303078 -153976476 - MIR SINE MIR -27 235 92 664 99 3 3 chr6 35305038 35305145 -153974409 + MER51B LTR ERV1 212 303 -74 231 313 40 80 chr6 35306322 35306472 -153973082 + L2 LINE L2 3079 3222 -50 1045 204 62 4 chr6 35308073 35308333 -153971221 + ORSL DNA AcHobo 1 275 0 659 147 17 40 chr6 35308679 35308856 -153970698 + CT-rich Low_complexity Low_complexity 1 173 0 1968 153 10 0 chr6 35308856 35309163 -153970391 - AluJo SINE Alu -2 310 1 24 0 0 0 chr6 35309694 35309718 -153969836 + AT_rich Low_complexity Low_complexity 1 24 0 2267 120 3 0 chr6 35310443 35310752 -153968802 - AluSg SINE Alu 0 310 1 1751 179 34 64 chr6 35311647 35312115 -153967439 + MER90 LTR ERV1 21 474 -140 1011 226 42 58 chr6 35312121 35312502 -153967052 + MLT2C1 LTR ERVL 5 379 -18 445 217 92 0 chr6 35312502 35312622 -153966932 + MER90 LTR ERV1 482 612 -2 369 271 10 0 chr6 35312711 35312807 -153966747 - MIR SINE MIR -108 154 58 624 70 0 0 chr6 35313316 35313402 -153966152 - AluY SINE Alu -4 308 223 1402 75 12 0 chr6 35313402 35313575 -153965979 - AluY SINE Alu -136 175 1 189 329 61 69 chr6 35314125 35314356 -153965198 + MIR SINE MIR 7 235 -27 290 324 29 7 chr6 35314560 35314696 -153964858 - MLT1H LTR MaLR -2 547 409 548 285 43 4 chr6 35314773 35315006 -153964548 - MLT1H LTR MaLR -250 299 14 2349 86 0 13 chr6 35315521 35315824 -153963730 + AluY SINE Alu 1 299 -12 595 186 106 0 chr6 35316154 35316267 -153963287 - FLAM_A SINE Alu -8 125 1 6458 75 8 19 chr6 35316344 35317569 -153961985 + L1PA13 LINE L1 4561 5812 -351 2153 79 68 0 chr6 35317569 35317849 -153961705 + AluY SINE Alu 1 299 -12 6458 75 8 19 chr6 35317849 35318193 -153961361 + L1PA13 LINE L1 5812 6158 -5 1038 200 23 19 chr6 35318205 35318420 -153961134 - MER20 DNA MER1_type -3 216 1 301 248 45 15 chr6 35318420 35318553 -153961001 + L1MEc LINE L1 1846 1982 -4414 1462 261 30 15 chr6 35318597 35319235 -153960319 + L1MEc LINE L1 2143 2754 -3461 2185 102 3 0 chr6 35319736 35320043 -153959511 + AluSq SINE Alu 1 308 0 391 236 7 107 chr6 35320673 35320813 -153958741 - MIR SINE MIR -1 261 136 357 263 45 6 chr6 35320813 35320969 -153958585 + L1M4 LINE L1 2170 2331 -3815 380 254 0 0 chr6 35320977 35321048 -153958506 - MIR SINE MIR -162 100 30 368 230 23 0 chr6 35321346 35321433 -153958121 + MER2 DNA MER2_type 10 98 -247 284 233 17 0 chr6 35321448 35321508 -153958046 + MER2 DNA MER2_type 285 345 0 21 36 0 0 chr6 35322582 35322610 -153956944 + AT_rich Low_complexity Low_complexity 1 28 0 343 372 50 11 chr6 35322623 35322803 -153956751 + HAL1 LINE L1 537 723 -1784 1128 111 50 15 chr6 35323336 35323534 -153956020 + L1MB5 LINE L1 5961 6165 -9 22 80 0 0 chr6 35323655 35323705 -153955849 + AT_rich Low_complexity Low_complexity 1 50 0 1941 163 47 116 chr6 35325250 35325742 -153953812 + MER66B LTR ERV1 29 486 0 481 329 104 27 chr6 35326014 35326388 -153953166 - L1ME LINE L1 -408 5754 5352 25 0 0 0 chr6 35326427 35326452 -153953102 + AT_rich Low_complexity Low_complexity 1 25 0 38 39 0 0 chr6 35326585 35326637 -153952917 + AT_rich Low_complexity Low_complexity 1 52 0 1347 168 0 4 chr6 35326720 35326970 -153952584 - L1M2 LINE L1 -635 5665 5417 497 283 67 100 chr6 35326982 35327517 -153952037 - L1ME LINE L1 -1153 4993 4475 1855 153 20 7 chr6 35327517 35327811 -153951743 - AluSx SINE Alu -14 298 1 497 283 67 100 chr6 35327811 35327827 -153951727 - L1ME LINE L1 -1671 4475 4460 273 373 8 25 chr6 35328029 35328167 -153951387 - MIR SINE MIR -66 142 8 2299 88 0 0 chr6 35328422 35328729 -153950825 - AluY SINE Alu 0 307 1 514 155 10 0 chr6 35329234 35329337 -153950217 - L1M4 LINE L1 -5141 1714 1611 1624 191 8 67 chr6 35329341 35329542 -153950012 + MLT1A1 LTR MaLR 1 170 -195 2789 41 0 0 chr6 35329542 35329883 -153949671 + L1PA4 LINE L1 5815 6155 0 1624 191 8 67 chr6 35329883 35330069 -153949485 + MLT1A1 LTR MaLR 170 365 0 5114 87 13 6 chr6 35330086 35330803 -153948751 - LTR30 LTR ERV1 0 722 1 345 167 26 0 chr6 35330803 35330881 -153948673 - L1M4 LINE L1 -5263 1596 1517 2318 157 64 73 chr6 35330881 35331398 -153948156 + MLT2B1 LTR ERVL 1 512 -8 3584 259 70 63 chr6 35331415 35332845 -153946709 - L1M4 LINE L1 -5337 1522 83 27 0 0 0 chr6 35332985 35333012 -153946542 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr6 35333914 35333942 -153945612 + AT_rich Low_complexity Low_complexity 1 28 0 3630 170 52 6 chr6 35333986 35334697 -153944857 + Tigger2 DNA MER2_type 1 744 -1974 1160 172 39 0 chr6 35334764 35334997 -153944557 + Tigger2 DNA MER2_type 2461 2702 -16 4955 131 65 31 chr6 35335001 35335447 -153944107 - MER4D LTR ERV1 0 903 474 2299 89 6 13 chr6 35335447 35335761 -153943793 + AluSx SINE Alu 1 312 0 4955 131 65 31 chr6 35335761 35336187 -153943367 - MER4D LTR ERV1 -429 474 1 193 217 192 58 chr6 35336318 35336438 -153943116 - MIR SINE MIR -121 141 6 2126 123 7 0 chr6 35337913 35338215 -153941339 - AluSx SINE Alu -8 304 1 189 275 110 0 chr6 35338505 35338596 -153940958 + MIR SINE MIR 129 229 -33 2102 143 0 3 chr6 35339793 35340183 -153939371 - AluSx SINE Alu 0 389 1 21 57 0 0 chr6 35340203 35340238 -153939316 + AT_rich Low_complexity Low_complexity 1 35 0 236 293 152 0 chr6 35340239 35340338 -153939216 - L2 LINE L2 -1 3312 3199 216 280 13 53 chr6 35340386 35340461 -153939093 + L2 LINE L2 3234 3305 -8 593 264 8 50 chr6 35341076 35341318 -153938236 - L1M4 LINE L1 -1038 5108 4877 238 178 0 0 chr6 35341343 35341388 -153938166 + L1ME3A LINE L1 5888 5932 -238 430 264 33 47 chr6 35341455 35341667 -153937887 + L1ME3A LINE L1 5962 6170 0 2252 121 0 0 chr6 35341713 35342018 -153937536 - AluSg SINE Alu -5 305 1 196 313 15 0 chr6 35343513 35343580 -153935974 + L2 LINE L2 3242 3309 -4 3980 162 20 50 chr6 35344917 35345288 -153934266 - L1MA7 LINE L1 0 6291 5910 2438 88 0 0 chr6 35345288 35345594 -153933960 - AluY SINE Alu -5 306 1 3980 162 20 50 chr6 35345594 35345902 -153933652 - L1MA7 LINE L1 -381 5910 5594 2042 129 0 41 chr6 35345902 35346219 -153933335 - AluSx SINE Alu -8 304 1 3980 162 20 50 chr6 35346219 35346364 -153933190 - L1MA7 LINE L1 -697 5594 5446 2340 108 0 3 chr6 35346364 35346670 -153932884 - AluSc SINE Alu 0 309 5 3980 162 20 50 chr6 35346670 35347309 -153932245 - L1MA7 LINE L1 -845 5446 4789 186 43 0 0 chr6 35347309 35347332 -153932222 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2019 126 0 0 chr6 35347335 35347613 -153931941 - AluSg1 SINE Alu -31 278 1 3980 162 20 50 chr6 35347613 35347743 -153931811 - L1MA7 LINE L1 -1504 4787 4643 945 167 0 10 chr6 35347727 35347925 -153931629 - L1MA7 LINE L1 -1726 4420 4225 * 266 256 0 33 chr6 35347923 35348013 -153931541 + L1M4 LINE L1 2678 2764 -3382 * 1548 175 0 0 chr6 35347996 35348259 -153931295 - L1MB1 LINE L1 -60 6129 5867 1175 135 0 59 chr6 35348262 35348484 -153931070 + L1 LINE L1 5152 5360 -786 512 200 29 0 chr6 35348484 35348589 -153930965 + MLT1A1 LTR MaLR 1 108 -266 2111 92 54 3 chr6 35348979 35349273 -153930281 + AluSc SINE Alu 1 309 0 28 0 0 0 chr6 35350011 35350039 -153929515 + AT_rich Low_complexity Low_complexity 1 28 0 710 198 85 124 chr6 35351305 35351563 -153927991 + MLT1A1 LTR MaLR 118 365 0 185 289 0 0 chr6 35351859 35351904 -153927650 + L3 LINE CR1 1115 1159 -418 22 0 0 0 chr6 35352157 35352179 -153927375 + AT_rich Low_complexity Low_complexity 1 22 0 427 60 0 0 chr6 35352305 35352355 -153927199 + Alu SINE Alu 2 51 -259 281 365 44 22 chr6 35352356 35352537 -153927017 + MIR SINE MIR 68 252 -10 1872 151 0 23 chr6 35352849 35353148 -153926406 - AluSx SINE Alu -20 292 1 184 359 43 11 chr6 35353740 35353832 -153925722 - MIR SINE MIR -94 114 20 259 222 14 0 chr6 35355206 35355278 -153924276 - MER116 DNA Mariner -6 74 2 1741 179 7 0 chr6 35355559 35355850 -153923704 - AluJb SINE Alu -17 295 3 823 321 112 52 chr6 35356072 35356604 -153922950 - L2 LINE L2 -1 3312 2813 2103 114 0 0 chr6 35356604 35356941 -153922613 - AluY SINE Alu 0 337 1 2231 99 0 26 chr6 35356943 35357246 -153922308 - AluSq SINE Alu -16 297 3 823 321 112 52 chr6 35357246 35357314 -153922240 - L2 LINE L2 -500 2813 2751 2104 132 0 3 chr6 35357314 35357624 -153921930 - AluY SINE Alu -2 309 1 823 321 112 52 chr6 35357624 35358431 -153921123 - L2 LINE L2 -562 2751 1813 180 350 12 12 chr6 35358664 35358744 -153920810 - L2 LINE L2 -5 3308 3229 350 172 8 29 chr6 35359652 35359774 -153919780 - MER53 DNA DNA 0 189 1 818 206 36 18 chr6 35360551 35360716 -153918838 + MER20 DNA MER1_type 45 212 -7 311 295 135 39 chr6 35360794 35361180 -153918374 - Tigger4(Zombi) DNA MER2_type -1961 770 348 212 265 0 0 chr6 35361183 35361232 -153918322 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 365 326 73 77 chr6 35361386 35361741 -153917813 + L2 LINE L2 2715 3062 -251 315 0 0 0 chr6 35362685 35362720 -153916834 + (TG)n Simple_repeat Simple_repeat 1 35 0 222 62 0 0 chr6 35362720 35362752 -153916802 + (GA)n Simple_repeat Simple_repeat 2 33 0 29 60 0 0 chr6 35363457 35363507 -153916047 + AT_rich Low_complexity Low_complexity 1 50 0 440 250 228 17 chr6 35364411 35364591 -153914963 - MIR SINE MIR -37 225 8 318 263 0 25 chr6 35365528 35365608 -153913946 + MIR SINE MIR 50 127 -135 1837 137 7 3 chr6 35366501 35366785 -153912769 + LTR12 LTR ERV1 1 285 -429 335 200 33 22 chr6 35366786 35366876 -153912678 + LTR30 LTR ERV1 553 643 -79 795 89 0 0 chr6 35366877 35366978 -153912576 + LTR12 LTR ERV1 481 581 -133 698 142 0 24 chr6 35367681 35367808 -153911746 + L1MA8 LINE L1 6164 6287 -4 382 314 108 35 chr6 35368459 35368800 -153910754 - MLT1L LTR MaLR -4 611 246 231 36 0 0 chr6 35369082 35369110 -153910444 + (CA)n Simple_repeat Simple_repeat 2 29 0 210 213 0 21 chr6 35369110 35369151 -153910403 + (TA)n Simple_repeat Simple_repeat 1 40 0 1246 259 17 3 chr6 35369596 35369893 -153909661 + L1MB8 LINE L1 5523 5823 -343 420 197 0 0 chr6 35369898 35369969 -153909585 + U1 snRNA snRNA 3 73 -92 599 234 7 7 chr6 35369971 35370108 -153909446 + L1PB4 LINE L1 6020 6156 0 962 288 45 14 chr6 35370115 35370473 -153909081 + L1MB8 LINE L1 5808 6176 -2 250 309 48 0 chr6 35370691 35370817 -153908737 + L1P5 LINE L1 5308 5439 -712 1121 263 42 39 chr6 35371973 35372516 -153907038 + L1M4 LINE L1 2581 3125 -3021 1091 313 61 18 chr6 35372541 35372588 -153906966 - L1M4 LINE L1 -1767 4379 4335 2458 167 33 17 chr6 35372588 35373007 -153906547 - MSTB LTR MaLR 0 426 1 1091 313 61 18 chr6 35373007 35373924 -153905630 - L1M4 LINE L1 -1811 4335 3336 2979 206 125 34 chr6 35373936 35374339 -153905215 + L1MDa LINE L1 1492 1857 -4683 1832 182 0 3 chr6 35374339 35374652 -153904902 - AluJb SINE Alu 0 312 1 2979 206 125 34 chr6 35374652 35375309 -153904245 + L1MDa LINE L1 1857 2649 -3891 669 194 41 70 chr6 35375339 35375612 -153903942 - MER52A LTR ERV1 -681 597 221 221 197 16 16 chr6 35376334 35376395 -153903159 + CT-rich Low_complexity Low_complexity 4 64 0 279 345 64 35 chr6 35376455 35376626 -153902928 + MIR SINE MIR 68 243 -19 264 310 161 23 chr6 35377447 35377621 -153901933 - MIR3 SINE MIR -4 204 7 281 179 15 15 chr6 35378962 35379029 -153900525 - MER116 DNA Mariner -8 72 6 566 167 56 9 chr6 35379301 35379409 -153900145 + MER4C LTR ERV1 353 465 0 2507 146 15 0 chr6 35379409 35379812 -153899742 - L1MA7 LINE L1 -458 5833 5425 184 143 0 0 chr6 35382080 35382108 -153897446 - MIR SINE MIR -34 228 201 2166 246 76 4 chr6 35382215 35382755 -153896799 + Zaphod DNA AcHobo 83 661 -3370 316 216 138 66 chr6 35384717 35384898 -153894656 - L1M2 LINE L1 -5889 960 767 266 304 108 0 chr6 35385755 35385857 -153893697 + L2 LINE L2 3201 3313 0 2566 55 0 3 chr6 35386081 35386393 -153893161 - AluY SINE Alu 0 311 1 268 266 26 35 chr6 35390979 35391092 -153888462 + (TCTCTG)n Simple_repeat Simple_repeat 3 114 0 180 97 0 0 chr6 35391249 35391280 -153888274 + (TG)n Simple_repeat Simple_repeat 2 32 0 252 209 0 0 chr6 35391331 35391374 -153888180 - MLT1K LTR MaLR -404 184 142 25 31 0 0 chr6 35393071 35393103 -153886451 + AT_rich Low_complexity Low_complexity 1 32 0 3307 145 61 30 chr6 35393171 35393326 -153886228 - L1MA7 LINE L1 -2 6289 6140 1306 210 52 6 chr6 35393326 35393655 -153885899 - MER2 DNA MER2_type 0 344 1 3307 145 61 30 chr6 35393655 35393736 -153885818 - L1MA7 LINE L1 -151 6140 6063 1657 174 32 0 chr6 35393736 35394018 -153885536 - AluJb SINE Alu -21 291 1 3307 145 61 30 chr6 35394018 35394455 -153885099 - L1MA7 LINE L1 -228 6063 5594 1073 83 0 0 chr6 35394495 35394628 -153884926 + AluSg SINE Alu 5 137 -173 6216 44 14 23 chr6 35394636 35395473 -153884081 + SVA Other Other 596 1425 0 294 53 53 0 chr6 35395530 35395587 -153883967 + A-rich Low_complexity Low_complexity 1 60 0 1161 122 0 0 chr6 35395587 35395743 -153883811 + AluSg SINE Alu 118 273 -37 876 279 24 20 chr6 35395854 35396151 -153883403 + LTR16A LTR ERVL 22 319 -131 214 290 48 16 chr6 35397085 35397147 -153882407 + L2 LINE L2 3134 3197 -75 417 226 78 39 chr6 35397556 35397760 -153881794 - L1MC5 LINE L1 -109 7852 7641 266 53 70 0 chr6 35397838 35397895 -153881659 + CT-rich Low_complexity Low_complexity 2 62 0 250 224 0 0 chr6 35397920 35397978 -153881576 - L1MC5 LINE L1 -519 7442 7385 216 0 0 0 chr6 35398166 35398190 -153881364 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1239 180 52 29 chr6 35398193 35398465 -153881089 - AluJo SINE Alu -30 282 5 345 82 0 0 chr6 35398861 35398910 -153880644 + (CA)n Simple_repeat Simple_repeat 2 50 0 189 0 0 0 chr6 35399082 35399103 -153880451 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 3363 30 0 0 chr6 35399111 35399508 -153880046 - L1PA4 LINE L1 -3 6152 5756 1963 134 10 6 chr6 35399508 35399573 -153879981 - L1MC1 LINE L1 -6 6327 6264 1879 149 41 56 chr6 35399573 35399915 -153879639 + MER1B DNA MER1_type 1 337 0 1963 134 10 6 chr6 35399915 35400162 -153879392 - L1MC1 LINE L1 -69 6264 6013 27 0 0 0 chr6 35400565 35400592 -153878962 + AT_rich Low_complexity Low_complexity 1 27 0 320 285 123 15 chr6 35400618 35400748 -153878806 - MIR SINE MIR -27 235 92 664 99 3 3 chr6 35402708 35402815 -153876739 + MER51B LTR ERV1 212 303 -74 231 313 40 80 chr6 35403992 35404142 -153875412 + L2 LINE L2 3079 3222 -50 1045 204 62 4 chr6 35405743 35406003 -153873551 + ORSL DNA AcHobo 1 275 0 659 147 17 40 chr6 35406349 35406526 -153873028 + CT-rich Low_complexity Low_complexity 1 173 0 1911 160 10 0 chr6 35406526 35406833 -153872721 - AluJo SINE Alu -2 310 1 24 0 0 0 chr6 35407364 35407388 -153872166 + AT_rich Low_complexity Low_complexity 1 24 0 2267 120 3 0 chr6 35408113 35408422 -153871132 - AluSg SINE Alu 0 310 1 1751 179 34 64 chr6 35409317 35409785 -153869769 + MER90 LTR ERV1 21 474 -140 1011 226 42 58 chr6 35409791 35410172 -153869382 + MLT2C1 LTR ERVL 5 379 -18 445 217 92 0 chr6 35410172 35410292 -153869262 + MER90 LTR ERV1 482 612 -2 369 271 10 0 chr6 35410381 35410477 -153869077 - MIR SINE MIR -108 154 58 624 70 0 0 chr6 35410986 35411072 -153868482 - AluY SINE Alu -4 308 223 1402 75 12 0 chr6 35411072 35411245 -153868309 - AluY SINE Alu -136 175 1 189 329 61 69 chr6 35411795 35412026 -153867528 + MIR SINE MIR 7 235 -27 290 324 29 7 chr6 35412230 35412366 -153867188 - MLT1H LTR MaLR -2 547 409 548 285 43 4 chr6 35412443 35412676 -153866878 - MLT1H LTR MaLR -250 299 14 2349 86 0 13 chr6 35413191 35413494 -153866060 + AluY SINE Alu 1 299 -12 595 186 106 0 chr6 35413824 35413937 -153865617 - FLAM_A SINE Alu -8 125 1 6458 75 8 19 chr6 35414014 35415239 -153864315 + L1PA13 LINE L1 4561 5812 -351 2153 79 68 0 chr6 35415239 35415519 -153864035 + AluY SINE Alu 1 299 -12 6458 75 8 19 chr6 35415519 35415863 -153863691 + L1PA13 LINE L1 5812 6158 -5 1038 200 23 19 chr6 35415875 35416090 -153863464 - MER20 DNA MER1_type -3 216 1 301 248 45 15 chr6 35416090 35416223 -153863331 + L1MEc LINE L1 1846 1982 -4414 1462 261 30 15 chr6 35416267 35416905 -153862649 + L1MEc LINE L1 2143 2754 -3461 2185 102 3 0 chr6 35417406 35417713 -153861841 + AluSq SINE Alu 1 308 0 391 236 7 107 chr6 35418343 35418483 -153861071 - MIR SINE MIR -1 261 136 357 263 45 6 chr6 35418483 35418639 -153860915 + L1M4 LINE L1 2170 2331 -3815 380 254 0 0 chr6 35418647 35418718 -153860836 - MIR SINE MIR -162 100 30 368 230 23 0 chr6 35419016 35419103 -153860451 + MER2 DNA MER2_type 10 98 -247 284 233 17 0 chr6 35419118 35419178 -153860376 + MER2 DNA MER2_type 285 345 0 21 36 0 0 chr6 35420252 35420280 -153859274 + AT_rich Low_complexity Low_complexity 1 28 0 343 372 50 11 chr6 35420293 35420473 -153859081 + HAL1 LINE L1 537 723 -1784 1128 111 50 15 chr6 35421006 35421204 -153858350 + L1MB5 LINE L1 5961 6165 -9 22 80 0 0 chr6 35421325 35421375 -153858179 + AT_rich Low_complexity Low_complexity 1 50 0 1941 163 47 116 chr6 35422919 35423411 -153856143 + MER66B LTR ERV1 29 486 0 481 329 104 27 chr6 35423683 35424057 -153855497 - L1ME LINE L1 -408 5754 5352 25 0 0 0 chr6 35424096 35424121 -153855433 + AT_rich Low_complexity Low_complexity 1 25 0 38 39 0 0 chr6 35424254 35424306 -153855248 + AT_rich Low_complexity Low_complexity 1 52 0 1347 168 0 4 chr6 35424389 35424639 -153854915 - L1M2 LINE L1 -635 5665 5417 497 283 67 100 chr6 35424651 35425186 -153854368 - L1ME LINE L1 -1153 4993 4475 1855 153 20 7 chr6 35425186 35425480 -153854074 - AluSx SINE Alu -14 298 1 497 283 67 100 chr6 35425480 35425496 -153854058 - L1ME LINE L1 -1671 4475 4460 273 373 8 25 chr6 35425698 35425836 -153853718 - MIR SINE MIR -66 142 8 2299 88 0 0 chr6 35426091 35426398 -153853156 - AluY SINE Alu 0 307 1 514 155 10 0 chr6 35426903 35427006 -153852548 - L1M4 LINE L1 -5141 1401 1298 1624 191 8 67 chr6 35427010 35427211 -153852343 + MLT1A1 LTR MaLR 1 170 -195 2789 41 0 0 chr6 35427211 35427552 -153852002 + L1PA4 LINE L1 5815 6155 0 1624 191 8 67 chr6 35427552 35427738 -153851816 + MLT1A1 LTR MaLR 170 365 0 323 26 0 0 chr6 35427755 35427793 -153851761 - LTR30 LTR ERV1 0 722 685 3279 106 43 11 chr6 35428545 35429085 -153850469 - L1MA1 LINE L1 -3 6299 5743 11859 151 14 39 chr6 35429086 35432064 -153847490 - L1MA1 LINE L1 -628 5674 2780 521 141 0 0 chr6 35432064 35432142 -153847412 + FLAM_C SINE Alu 33 110 -33 314 297 54 14 chr6 35432494 35432642 -153846912 - L1ME4a LINE L1 -201 5920 5767 2350 82 3 0 chr6 35432649 35432942 -153846612 + AluSq SINE Alu 1 294 -19 1735 33 0 9 chr6 35433212 35433424 -153846130 + L1PA5 LINE L1 5936 6145 -9 34 0 0 0 chr6 35433425 35433459 -153846095 + AT_rich Low_complexity Low_complexity 1 34 0 398 224 102 20 chr6 35433545 35433692 -153845862 - L1MC4 LINE L1 -126 7916 7758 548 87 33 0 chr6 35533990 35534082 -153745472 + L1PB1 LINE L1 6056 6150 -1 2271 107 0 0 chr6 35534099 35534399 -153745155 + AluSg SINE Alu 1 300 -10 904 264 51 34 chr6 35534403 35534911 -153744643 - L1M4 LINE L1 -2045 4101 3585 1496 181 14 69 chr6 35534912 35535276 -153744278 - MER2 DNA MER2_type -1 344 1 267 328 20 5 chr6 35535331 35535529 -153744025 - L1M4 LINE L1 -2618 3528 3328 2907 40 0 0 chr6 35535719 35536071 -153743483 - L1PA4 LINE L1 -5 6150 5799 363 43 0 0 chr6 35536071 35536118 -153743436 + L1PA4 LINE L1 5757 5803 -352 266 0 29 0 chr6 35536309 35536343 -153743211 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 7575 27 6 0 chr6 35536344 35537613 -153741941 - L1PA3 LINE L1 -11 6144 4873 389 386 50 33 chr6 35537843 35538206 -153741348 - L1MEc LINE L1 -5997 399 31 200 94 31 0 chr6 35538326 35538358 -153741196 + (CA)n Simple_repeat Simple_repeat 2 34 0 3274 157 80 1 chr6 35538371 35539048 -153740506 + Tigger3b DNA MER2_type 1 730 -501 7896 165 16 1 chr6 35539048 35540535 -153739019 + L1PA11 LINE L1 2605 4112 -2034 6528 132 30 0 chr6 35540561 35540941 -153738613 + L1PA11 LINE L1 4262 4629 -1545 2306 99 0 3 chr6 35540941 35541233 -153738321 - AluSg SINE Alu -19 291 1 6528 132 30 0 chr6 35541233 35542757 -153736797 + L1PA11 LINE L1 4629 6171 -3 1451 86 37 29 chr6 35542761 35543006 -153736548 + Tigger3b DNA MER2_type 724 970 -262 2292 193 26 94 chr6 35543030 35543708 -153735846 - MER21B LTR ERV1 -14 849 218 802 239 15 15 chr6 35543711 35543971 -153735583 + L1 LINE L1 4214 4473 -1673 * 42558 61 2 1 chr6 35543970 35550120 -153729434 + L1PA6 LINE L1 2 6154 0 203 133 44 0 chr6 35550139 35550184 -153729370 + (TA)n Simple_repeat Simple_repeat 1 47 0 7097 170 32 10 chr6 35550186 35551560 -153727994 + L1 LINE L1 2908 4311 -1835 956 171 0 51 chr6 35551560 35551577 -153727977 + AluJb SINE Alu 125 141 -171 1250 204 70 35 chr6 35551577 35551861 -153727693 + AluJo SINE Alu 1 294 -18 956 171 0 51 chr6 35551861 35552018 -153727536 + AluJb SINE Alu 141 290 -22 189 319 88 26 chr6 35552973 35553086 -153726468 + MIR SINE MIR 20 139 -123 525 16 0 0 chr6 35553654 35553716 -153725838 + (TC)n Simple_repeat Simple_repeat 1 62 0 622 255 202 36 chr6 35553724 35554144 -153725410 + L2 LINE L2 1218 1707 -1607 717 191 24 0 chr6 35554297 35554309 -153725245 - FLAM_C SINE Alu -182 130 120 210 37 0 0 chr6 35554309 35554336 -153725218 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 717 191 24 0 chr6 35554336 35554449 -153725105 - FLAM_C SINE Alu -192 120 2 306 258 71 58 chr6 35554516 35554671 -153724883 - HAL1 LINE L1 -1384 1123 967 351 304 43 19 chr6 35555244 35555405 -153724149 - L1MC/D LINE L1 -2029 5779 5615 1595 140 92 15 chr6 35555455 35555726 -153723828 - AluJb SINE Alu -20 292 1 1299 255 34 13 chr6 35555997 35556538 -153723016 + MER90 LTR ERV1 1 559 -16 559 157 74 0 chr6 35557374 35557482 -153722072 + Charlie1 DNA MER1_type 2164 2279 -482 1309 181 8 4 chr6 35557482 35557725 -153721829 - L1 LINE L1 -2011 4135 3892 393 75 0 0 chr6 35557728 35557781 -153721773 + (GA)n Simple_repeat Simple_repeat 2 54 0 214 222 19 0 chr6 35558158 35558212 -153721342 - MIR SINE MIR -72 136 82 423 0 0 0 chr6 35558503 35558550 -153721004 + (A)n Simple_repeat Simple_repeat 1 47 0 396 231 37 15 chr6 35558561 35558695 -153720859 + L1ME3A LINE L1 5265 5401 -958 772 32 0 0 chr6 35558695 35558788 -153720766 + AluY SINE Alu 212 304 -7 1286 172 76 30 chr6 35558790 35559092 -153720462 + L1ME3A LINE L1 5392 5707 -652 216 0 0 0 chr6 35559110 35559134 -153720420 + (A)n Simple_repeat Simple_repeat 1 24 0 274 235 139 42 chr6 35559372 35559538 -153720016 + L1ME3A LINE L1 5988 6169 -1 264 160 0 40 chr6 35560299 35560349 -153719205 - MLT2B1 LTR ERVL 0 520 473 747 236 16 16 chr6 35560349 35560531 -153719023 - MLT2D LTR ERVL -232 182 1 190 250 0 0 chr6 35560562 35560606 -153718948 + MIR SINE MIR 211 254 -8 616 188 116 0 chr6 35561384 35561496 -153718058 + FLAM_C SINE Alu 3 127 -16 195 301 24 0 chr6 35562085 35562168 -153717386 - MIR3 SINE MIR -43 165 81 505 312 59 21 chr6 35562645 35563020 -153716534 + HAL1 LINE L1 1841 2229 -278 430 93 27 0 chr6 35663302 35663377 -153616177 + AluSc SINE Alu 232 308 -1 1787 159 3 38 chr6 35663433 35663753 -153615801 + AluSx SINE Alu 1 309 -3 348 283 20 0 chr6 35664492 35664591 -153614963 + MIR SINE MIR 45 145 -63 2248 185 42 11 chr6 35665660 35666108 -153613446 + MLT1C LTR MaLR 6 467 0 2038 223 95 13 chr6 35666329 35666853 -153612701 + MLT1F1 LTR MaLR 1 567 0 474 190 100 10 chr6 35667343 35667443 -153612111 - MER45A DNA AcHobo 0 178 70 645 218 52 15 chr6 35667564 35667816 -153611738 + LTR16C LTR ERVL 167 491 0 200 340 100 27 chr6 35667966 35668116 -153611438 - L2 LINE L2 -528 2786 2626 718 205 24 12 chr6 35668676 35668842 -153610712 - MER5B DNA MER1_type 0 178 11 783 235 101 0 chr6 35668945 35669124 -153610430 - MLT1J LTR MaLR -313 198 2 183 289 79 0 chr6 35669825 35669901 -153609653 - MIR SINE MIR -107 155 74 2293 126 95 18 chr6 35670906 35671294 -153608260 - MSTA LTR MaLR -7 421 4 813 146 0 44 chr6 35671318 35671455 -153608099 + FLAM_C SINE Alu 3 133 0 1036 216 69 10 chr6 35671479 35671789 -153607765 + MSTC-int LTR MaLR 1227 1580 0 1813 133 200 3 chr6 35671789 35672104 -153607450 + MSTC LTR MaLR 1 377 -51 381 235 108 13 chr6 35672105 35672344 -153607210 + L1MC4a LINE L1 5265 5550 -626 1223 146 275 0 chr6 35672354 35672634 -153606920 - LTR29 LTR ERV1 -262 360 4 1073 143 7 103 chr6 35672665 35672905 -153606649 + Charlie5 DNA MER1_type 2339 2552 -33 1999 128 7 20 chr6 35672905 35673202 -153606352 - AluSx SINE Alu -19 293 1 1073 143 7 103 chr6 35673202 35673234 -153606320 + Charlie5 DNA MER1_type 2552 2585 0 23 0 0 0 chr6 35673268 35673291 -153606263 + AT_rich Low_complexity Low_complexity 1 23 0 398 259 170 30 chr6 35673464 35673865 -153605689 + L1MC/D LINE L1 5304 5760 -2048 3603 175 28 49 chr6 35674019 35674768 -153604786 - MER44D DNA MER2_type 0 605 1 1419 211 83 52 chr6 35674832 35675185 -153604369 + MER84 LTR ERVI 14 387 -120 4424 101 79 8 chr6 35675185 35675465 -153604089 - LTR8 LTR ERV1 0 691 432 1839 103 3 62 chr6 35675465 35675756 -153603798 + AluSq SINE Alu 35 308 -5 4424 101 79 8 chr6 35675756 35676120 -153603434 - LTR8 LTR ERV1 -259 432 1 1419 211 83 52 chr6 35676120 35676245 -153603309 + MER84 LTR ERVI 387 507 0 482 299 85 14 chr6 35676245 35676599 -153602955 + L1MC4a LINE L1 5562 5940 -1868 29 47 0 0 chr6 35676790 35676833 -153602721 + AT_rich Low_complexity Low_complexity 1 43 0 995 237 122 35 chr6 35677159 35677354 -153602200 + MER58B DNA MER1_type 3 236 -2184 2153 84 0 42 chr6 35677354 35677664 -153601890 - AluSx SINE Alu -15 297 1 995 237 122 35 chr6 35677664 35677780 -153601774 + MER58B DNA MER1_type 236 341 0 255 331 7 22 chr6 35678823 35678959 -153600595 - L2 LINE L2 -2 3270 3137 21 0 0 0 chr6 35679495 35679516 -153600038 + GC_rich Low_complexity Low_complexity 1 21 0 899 111 19 167 chr6 35681203 35681419 -153598135 - MER30B DNA MER1_type 0 190 7 2167 136 3 0 chr6 35683665 35683975 -153595579 + AluSx SINE Alu 2 312 0 344 249 96 8 chr6 35684753 35684878 -153594676 - MIR SINE MIR -61 147 37 * 436 300 33 0 chr6 35684876 35684996 -153594558 - L2 LINE L2 -10 3262 3139 1262 265 160 22 chr6 35685534 35686020 -153593534 - MER20B DNA MER1_type -6 777 169 2439 72 0 25 chr6 35686020 35686339 -153593215 - AluY SINE Alu 0 311 1 1262 265 160 22 chr6 35686339 35686535 -153593019 - MER20B DNA MER1_type -614 169 1 258 254 0 0 chr6 35686633 35686692 -153592862 + (CA)n Simple_repeat Simple_repeat 2 60 0 1084 238 66 14 chr6 35687419 35687705 -153591849 - AluJo SINE Alu -1 301 1 252 78 0 62 chr6 35687963 35688027 -153591527 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 1437 199 0 14 chr6 35688028 35688305 -153591249 - AluJb SINE Alu -39 273 1 652 160 0 0 chr6 35689047 35689147 -153590407 - Tigger1 DNA MER2_type 0 2418 2319 10044 115 151 82 chr6 35689147 35689803 -153589751 - Tigger1 DNA MER2_type -236 2182 1573 2173 108 0 17 chr6 35689803 35690099 -153589455 + AluSq SINE Alu 1 291 -22 10044 115 151 82 chr6 35690099 35690110 -153589444 - Tigger1 DNA MER2_type -845 1573 1564 754 206 0 0 chr6 35690110 35690236 -153589318 + FLAM_C SINE Alu 2 127 -16 10044 115 151 82 chr6 35690236 35691483 -153588071 - Tigger1 DNA MER2_type -854 1564 1 1884 93 12 0 chr6 35691827 35692073 -153587481 - AluSx SINE Alu -5 307 59 1813 91 13 0 chr6 35792073 35792305 -153487249 - AluSc SINE Alu -74 235 1 2083 131 10 3 chr6 35793504 35793801 -153485753 + AluSx SINE Alu 1 299 -13 2264 91 14 0 chr6 35793805 35794101 -153485453 + AluSc SINE Alu 1 300 -9 212 319 152 1 chr6 35794775 35794920 -153484634 + MIR SINE MIR 41 205 -57 220 192 51 51 chr6 35797153 35797231 -153482323 + MER5A DNA MER1_type 9 86 -103 267 350 43 7 chr6 35797335 35797475 -153482079 + MER5A DNA MER1_type 45 189 0 2161 99 14 0 chr6 35797744 35798055 -153481499 + AluSq SINE Alu 1 315 0 210 348 54 0 chr6 35800224 35800336 -153479218 + MIR SINE MIR 35 152 -110 1267 206 14 1 chr6 35801010 35801325 -153478229 + L1PA15 LINE L1 2710 3028 -3821 * 11926 181 49 12 chr6 35801319 35801453 -153478101 + L1PA15 LINE L1 3354 3482 -3386 2067 138 3 3 chr6 35801453 35801750 -153477804 + AluSx SINE Alu 1 297 -15 11926 181 49 12 chr6 35801750 35804629 -153474925 + L1PA15 LINE L1 3482 6496 -372 2108 99 34 10 chr6 35804629 35804921 -153474633 + AluSg SINE Alu 3 301 -9 11926 181 49 12 chr6 35804921 35805309 -153474245 + L1PA15 LINE L1 6496 6868 0 1467 215 7 4 chr6 35805341 35805620 -153473934 + AluJo SINE Alu 1 280 -32 215 255 199 41 chr6 35805779 35805975 -153473579 + MIR SINE MIR 21 247 -15 582 301 85 19 chr6 35806373 35806632 -153472922 + MLT1I LTR MaLR 121 396 -13 2180 125 0 0 chr6 35807145 35807440 -153472114 - AluSx SINE Alu -15 297 3 706 237 88 40 chr6 35808566 35808794 -153470760 - MIR SINE MIR -10 252 14 249 277 101 26 chr6 35808827 35809022 -153470532 + L2 LINE L2 2979 3272 0 275 227 30 15 chr6 35809045 35809111 -153470443 + L1ME LINE L1 3 69 -6001 615 285 142 11 chr6 35809148 35809415 -153470139 + L3 LINE CR1 1251 1552 -25 233 254 95 56 chr6 35809474 35809600 -153469954 + MIR SINE MIR 76 206 -56 208 191 21 0 chr6 35809600 35809647 -153469907 + T-rich Low_complexity Low_complexity 2 49 0 540 231 0 0 chr6 35812123 35812231 -153467323 + MLT2D LTR ERVL 238 345 -69 249 213 0 0 chr6 35812878 35812925 -153466629 - L2 LINE L2 -88 3184 3138 7186 157 38 2 chr6 35814017 35815708 -153463846 + L1P4 LINE L1 3971 5725 -436 2212 108 10 16 chr6 35815708 35816022 -153463532 + AluSp SINE Alu 1 312 -1 7566 114 51 7 chr6 35816024 35817367 -153462187 + L1M1 LINE L1 2419 3835 -3730 2351 175 36 10 chr6 35817367 35817784 -153461770 + MSTA LTR MaLR 1 428 0 10337 153 22 9 chr6 35817784 35819413 -153460141 + MSTA-int LTR MaLR 1 1651 0 503 293 136 38 chr6 35919498 35919843 -153359711 + L3 LINE CR1 946 1324 -253 180 175 100 0 chr6 35919919 35919959 -153359595 + L2 LINE L2 3220 3263 -9 2378 103 0 0 chr6 35920396 35920697 -153358857 - AluSq SINE Alu -12 301 1 26 30 0 0 chr6 35920701 35920734 -153358820 + AT_rich Low_complexity Low_complexity 1 33 0 720 176 84 27 chr6 35920863 35921117 -153358437 + HsTC2 DNA Tc2 3 308 -1590 554 283 29 0 chr6 35921156 35921329 -153358225 + HsTC2 DNA Tc2 1721 1898 0 1884 137 0 29 chr6 35921586 35921892 -153357662 - AluJb SINE Alu -14 298 2 23 0 0 0 chr6 35922323 35922346 -153357208 + AT_rich Low_complexity Low_complexity 1 23 0 2335 81 3 3 chr6 35922434 35922732 -153356822 - AluSq SINE Alu -15 298 1 852 128 0 71 chr6 35923455 35923596 -153355958 - FLAM_C SINE Alu -10 133 3 723 171 137 55 chr6 35924959 35925105 -153354449 - FRAM SINE Alu -8 158 1 1112 170 0 1 chr6 35925128 35925351 -153354203 - AluJo SINE Alu -30 282 28 891 152 0 0 chr6 35925365 35925490 -153354064 - AluJo SINE Alu -177 125 1 2351 106 3 0 chr6 35927088 35927400 -153352154 + AluSq SINE Alu 1 313 0 3133 126 26 67 chr6 35928710 35929280 -153350274 - LTR10A LTR ERV1 -62 547 1 563 201 76 7 chr6 35929672 35929816 -153349738 - MER5B DNA MER1_type -24 154 1 2067 104 3 20 chr6 35930137 35930435 -153349119 + AluSx SINE Alu 1 293 -19 462 272 78 52 chr6 35931107 35931437 -153348117 + L1MC4a LINE L1 5531 5819 -302 2100 69 4 11 chr6 35932041 35932303 -153347251 + AluSg SINE Alu 1 260 -50 630 199 26 33 chr6 35934522 35934717 -153344837 + L1MB8 LINE L1 5975 6178 0 2383 53 0 3 chr6 35935206 35935521 -153344033 + AluY SINE Alu 1 314 0 2017 128 0 29 chr6 35936297 35936603 -153342951 - AluJo SINE Alu -15 297 1 525 314 123 5 chr6 35936638 35936858 -153342696 + MIR SINE MIR 2 247 -15 22 0 0 0 chr6 35936867 35936889 -153342665 + AT_rich Low_complexity Low_complexity 1 22 0 3652 182 57 90 chr6 35937069 35938153 -153341401 - L1MD3 LINE L1 0 8042 7008 291 301 53 18 chr6 35938433 35938546 -153341008 + MIR SINE MIR 96 212 -50 199 170 128 0 chr6 35938636 35938683 -153340871 - MIR SINE MIR -114 148 96 27 0 0 0 chr6 35940705 35940732 -153338822 + AT_rich Low_complexity Low_complexity 1 27 0 2743 147 11 71 chr6 35940913 35940962 -153338592 + L1PB4 LINE L1 5656 5706 -450 2243 94 0 10 chr6 35940962 35941274 -153338280 - AluSx SINE Alu 0 309 1 2743 147 11 71 chr6 35941274 35941729 -153337825 + L1PB4 LINE L1 5706 6130 -26 1626 174 41 10 chr6 35941729 35942023 -153337531 - AluJo SINE Alu -9 303 1 2743 147 11 71 chr6 35942023 35942048 -153337506 + L1PB4 LINE L1 6130 6155 -1 2132 138 0 0 chr6 35942929 35943227 -153336327 - AluSx SINE Alu -3 309 12 773 153 0 32 chr6 35943348 35943472 -153336082 - FRAM SINE Alu -14 162 43 617 137 11 0 chr6 35944039 35944134 -153335420 + FRAM SINE Alu 75 170 -6 229 282 0 26 chr6 35944254 35944332 -153335222 + L1MC5 LINE L1 7832 7907 -54 236 218 69 89 chr6 35945303 35945404 -153334150 - MIR SINE MIR -40 222 124 507 214 29 86 chr6 35946083 35946126 -153333428 - MER5B DNA MER1_type -1 177 133 2283 93 7 0 chr6 35946126 35946427 -153333127 - AluSg SINE Alu -6 304 2 507 214 29 86 chr6 35946427 35946523 -153333031 - MER5B DNA MER1_type -45 133 46 2336 69 0 3 chr6 35946788 35947112 -153332442 + AluY SINE Alu 1 311 0 465 278 81 0 chr6 35947249 35947422 -153332132 + MIR SINE MIR 35 221 -41 2230 104 0 0 chr6 35947702 35948009 -153331545 + AluSc SINE Alu 1 307 0 963 167 42 0 chr6 35948836 35949004 -153330550 - AluSg/x SINE Alu -2 308 134 715 125 36 0 chr6 35949004 35949116 -153330438 + AluSg/x SINE Alu 182 297 -13 450 36 0 0 chr6 35949116 35949172 -153330382 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 500 231 319 0 chr6 35951316 35951498 -153328056 + MIR SINE MIR 23 262 0 1967 133 4 0 chr6 35951556 35951834 -153327720 + AluJb SINE Alu 1 279 -33 628 183 87 0 chr6 35951941 35952056 -153327498 - FLAM_A SINE Alu -6 127 3 224 209 60 15 chr6 35952932 35952999 -153326555 + MIR SINE MIR 123 192 -70 2353 105 0 6 chr6 35953281 35953595 -153325959 - AluSq SINE Alu 0 313 2 972 223 147 44 chr6 35954032 35954541 -153325013 - MLT1G LTR MaLR -5 537 3 709 126 0 9 chr6 35954683 35954794 -153324760 - L1MA3 LINE L1 0 6305 6196 2331 155 45 55 chr6 35955198 35955708 -153323846 - MLT1D LTR MaLR 0 505 1 2171 132 0 0 chr6 35955858 35956154 -153323400 - AluSx SINE Alu -16 296 1 229 337 35 0 chr6 35957320 35957406 -153322148 - L2 LINE L2 -31 3241 3153 335 219 248 0 chr6 35957544 35957649 -153321905 + MER94 DNA DNA 1 131 -3 1964 150 14 7 chr6 35957724 35958018 -153321536 - AluJb SINE Alu -16 296 1 195 42 0 0 chr6 35958600 35958624 -153320930 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 217 200 10 70 chr6 35962142 35962242 -153317312 + G-rich Low_complexity Low_complexity 5 98 0 197 163 0 23 chr6 35962889 35962932 -153316622 + MIR SINE MIR 113 154 -108 238 252 233 0 chr6 35963250 35963353 -153316201 + L2 LINE L2 3144 3270 -2 182 312 94 51 chr6 35964017 35964155 -153315399 - MIR3 SINE MIR -61 147 4 276 30 0 0 chr6 35964230 35964263 -153315291 + (TG)n Simple_repeat Simple_repeat 1 33 0 1884 118 0 8 chr6 35965132 35965394 -153314160 + AluSq SINE Alu 1 260 -53 232 48 48 0 chr6 35965399 35965441 -153314113 + (CAA)n Simple_repeat Simple_repeat 2 45 0 193 232 43 58 chr6 35965473 35965542 -153314012 - L2 LINE L2 -9 3304 3237 2349 84 0 32 chr6 35966434 35966742 -153312812 - AluSg SINE Alu -12 298 1 197 276 13 40 chr6 35966760 35966836 -153312718 - MER5A DNA MER1_type -3 186 113 351 310 152 6 chr6 35967053 35967211 -153312343 + MIR3 SINE MIR 20 200 -8 276 174 0 0 chr6 35968270 35968316 -153311238 - Charlie1 DNA MER1_type -15 2746 2701 * 336 295 0 0 chr6 35968302 35968380 -153311174 - Charlie1 DNA MER1_type -2679 82 5 2404 82 0 3 chr6 35968604 35968908 -153310646 - AluSg SINE Alu -7 303 1 350 308 147 0 chr6 35969089 35969245 -153310309 + LTR33 LTR ERVL 34 212 -309 1049 226 186 75 chr6 35971799 35972248 -153307306 + L2 LINE L2 2334 2731 -582 1914 149 0 14 chr6 35972248 35972543 -153307011 - AluSx SINE Alu -21 291 1 1049 226 186 75 chr6 35972543 35972893 -153306661 + L2 LINE L2 2731 3041 -272 213 39 0 0 chr6 35972893 35972919 -153306635 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 2352 84 0 3 chr6 35972924 35973210 -153306344 - AluSx SINE Alu -27 285 1 1049 226 186 75 chr6 35973210 35973230 -153306324 + L2 LINE L2 3044 3311 -2 2132 128 7 3 chr6 35973657 35973961 -153305593 + AluSx SINE Alu 1 305 -7 3572 159 32 10 chr6 35973961 35974585 -153304969 - L1MB2 LINE L1 -13 6158 5521 2036 134 0 10 chr6 35974642 35974971 -153304583 + AluSx SINE Alu 1 326 0 1369 168 137 18 chr6 35975900 35976228 -153303326 - MER58D DNA MER1_type -3 383 17 2437 88 0 0 chr6 35976501 35976795 -153302759 + AluSc SINE Alu 1 294 -15 677 194 6 0 chr6 35977903 35978068 -153301486 + (CAT)n Simple_repeat Simple_repeat 2 167 0 * 743 159 7 0 chr6 35978039 35978190 -153301364 + (CCA)n Simple_repeat Simple_repeat 1 152 0 975 120 0 0 chr6 35978211 35978429 -153301125 + (CCA)n Simple_repeat Simple_repeat 1 218 0 567 239 0 0 chr6 35978456 35978623 -153300931 + (CCA)n Simple_repeat Simple_repeat 1 167 0 372 248 0 0 chr6 35978681 35978798 -153300756 + (CCA)n Simple_repeat Simple_repeat 2 118 0 258 235 0 47 chr6 35978799 35978884 -153300670 - MIR SINE MIR -110 152 72 1834 154 3 17 chr6 35980871 35981163 -153298391 + AluJb SINE Alu 1 288 -24 201 74 0 0 chr6 35983083 35983110 -153296444 + (CAT)n Simple_repeat Simple_repeat 3 29 0 267 31 0 0 chr6 35983394 35983426 -153296128 + (TG)n Simple_repeat Simple_repeat 1 32 0 209 146 21 0 chr6 35983426 35983474 -153296080 + GA-rich Low_complexity Low_complexity 2 50 0 209 171 0 0 chr6 35983511 35983546 -153296008 + CT-rich Low_complexity Low_complexity 2 36 0 375 315 40 7 chr6 35984035 35984184 -153295370 - MIR3 SINE MIR -38 170 17 538 280 126 5 chr6 35984325 35984532 -153295022 - MIR SINE MIR -27 235 4 2388 95 3 13 chr6 35986105 35986421 -153293133 + AluSq SINE Alu 1 313 0 330 107 0 0 chr6 35986431 35986487 -153293067 + (GA)n Simple_repeat Simple_repeat 1 56 0 222 37 0 0 chr6 35987503 35987530 -153292024 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 409 242 47 71 chr6 35988280 35988500 -153291054 + MER20B DNA MER1_type 1 219 0 21 0 0 0 chr6 35988629 35988650 -153290904 + AT_rich Low_complexity Low_complexity 1 21 0 486 236 55 0 chr6 35988763 35988902 -153290652 - MIR SINE MIR -63 145 44 2824 143 33 18 chr6 35989106 35989561 -153289993 + MLT1C LTR MaLR 6 467 0 258 312 0 0 chr6 35989572 35989649 -153289905 + MIR SINE MIR 169 245 -17 260 298 125 0 chr6 35989707 35989811 -153289743 - L3b LINE CR1 -270 1313 1197 308 299 60 12 chr6 35989925 35990092 -153289462 + L1MB8 LINE L1 5774 5948 -230 571 239 178 15 chr6 35990121 35990318 -153289236 - MIR SINE MIR -33 229 1 328 230 86 53 chr6 35990350 35990502 -153289052 - MER34B LTR ERV1 -183 382 226 367 143 48 24 chr6 35990614 35990698 -153288856 - MER34C LTR ERV1 -471 114 29 35 0 0 0 chr6 35991242 35991277 -153288277 + AT_rich Low_complexity Low_complexity 1 35 0 2154 103 0 26 chr6 35991731 35992033 -153287521 - AluSx SINE Alu -18 294 1 198 278 191 8 chr6 35992466 35992592 -153286962 + MIR SINE MIR 8 156 -106 367 310 30 10 chr6 35993253 35993453 -153286101 + Charlie2 DNA MER1_type 1855 2058 -804 3444 32 0 0 chr6 35993489 35994090 -153285464 - L1PA4 LINE L1 -498 5657 5057 4017 59 0 0 chr6 35994090 35994576 -153284978 + L1PA4 LINE L1 5659 6147 -8 5466 184 24 46 chr6 35994591 35995727 -153283827 + L1M4 LINE L1 -215 895 -5385 2087 221 37 71 chr6 35995715 35995955 -153283599 + L1M4 LINE L1 1323 1570 -4993 * 1709 130 28 0 chr6 35995955 35996239 -153283315 + L1MA4 LINE L1 6009 6300 0 2087 221 37 71 chr6 35996239 35996868 -153282686 + L1M4 LINE L1 1570 2302 -4261 936 195 43 17 chr6 35996890 35997121 -153282433 + Charlie2 DNA MER1_type 2040 2276 -586 27 29 0 0 chr6 35997135 35997169 -153282385 + AT_rich Low_complexity Low_complexity 1 34 0 2185 112 28 0 chr6 35997169 35997454 -153282100 - AluSx SINE Alu -19 293 1 1089 110 0 0 chr6 35997526 35997671 -153281883 + AluSg/x SINE Alu 157 301 -11 215 192 40 19 chr6 35998090 35998152 -153281402 + GA-rich Low_complexity Low_complexity 1 63 0 189 174 43 14 chr6 35998807 35998876 -153280678 + GA-rich Low_complexity Low_complexity 1 71 0 2518 87 3 0 chr6 35999598 35999910 -153279644 - AluSp SINE Alu 0 313 1 2149 187 66 0 chr6 36003458 36003865 -153275689 + MER63B DNA MER1_type 2 435 -1 978 201 3 106 chr6 36004027 36004131 -153275423 + MLT1A2 LTR MaLR 1 114 -260 2200 98 3 17 chr6 36004131 36004426 -153275128 + AluSp SINE Alu 1 291 -22 978 201 3 106 chr6 36004426 36004614 -153274940 + MLT1A2 LTR MaLR 114 263 -111 1378 211 63 46 chr6 36004655 36005093 -153274461 + MER39 LTR ERV1 67 707 0 587 150 50 0 chr6 36005106 36005206 -153274348 + MLT1A2 LTR MaLR 286 390 0 1922 161 28 0 chr6 36005536 36005827 -153273727 - AluJb SINE Alu -13 299 1 351 180 123 49 chr6 36006264 36006386 -153273168 - L1ME4a LINE L1 -21 6100 5970 22 0 0 0 chr6 36006778 36006800 -153272754 + AT_rich Low_complexity Low_complexity 1 22 0 2350 88 0 16 chr6 36006802 36007108 -153272446 + AluSx SINE Alu 1 301 -11 443 299 68 32 chr6 36007115 36007393 -153272161 - L1ME4a LINE L1 -2 6119 5832 30 0 0 0 chr6 36007546 36007576 -153271978 + AT_rich Low_complexity Low_complexity 1 30 0 580 288 47 33 chr6 36007581 36007793 -153271761 - MIR SINE MIR -35 227 13 889 203 21 10 chr6 36008316 36008508 -153271046 - MIR SINE MIR -10 252 59 225 361 17 8 chr6 36008552 36008671 -153270883 - L2 LINE L2 -159 3113 2994 2340 87 0 10 chr6 36008671 36008983 -153270571 + AluY SINE Alu 1 309 -2 234 274 167 27 chr6 36009011 36009274 -153270280 + L1ME LINE L1 5523 5822 -299 1277 197 4 17 chr6 36009793 36010032 -153269522 - MLT1C LTR MaLR -2 465 230 912 193 6 0 chr6 36010033 36010194 -153269360 - FRAM SINE Alu -14 162 1 945 143 26 2 chr6 36010197 36010389 -153269165 - MLT1C LTR MaLR -233 234 2 190 185 25 185 chr6 36010832 36010913 -153268641 + L2 LINE L2 3126 3193 -79 1610 181 10 91 chr6 36011249 36011601 -153267953 - MLT1A1 LTR MaLR 0 365 47 1806 166 0 13 chr6 36011601 36011909 -153267645 - AluJb SINE Alu -8 304 1 1610 181 10 91 chr6 36011909 36011953 -153267601 - MLT1A1 LTR MaLR -318 47 1 255 366 40 40 chr6 36012090 36012265 -153267289 - L2 LINE L2 -6 3266 3092 262 191 79 0 chr6 36012563 36012626 -153266928 + MIR SINE MIR 85 152 -56 712 276 60 13 chr6 36012670 36012713 -153266841 - MIR SINE MIR -13 249 209 2138 102 17 7 chr6 36012713 36013006 -153266548 - AluSx SINE Alu -16 296 1 712 276 60 13 chr6 36013006 36013194 -153266360 - MIR SINE MIR -53 209 7 2108 120 20 3 chr6 36014113 36014412 -153265142 - AluSq SINE Alu -9 304 1 247 267 0 0 chr6 36014586 36014672 -153264882 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 243 240 0 0 chr6 36014797 36014847 -153264707 + (TG)n Simple_repeat Simple_repeat 2 51 0 4181 223 68 8 chr6 36014936 36015016 -153264538 - L1MD2 LINE L1 -13 6346 6272 547 154 103 68 chr6 36015016 36015133 -153264421 - FLAM_A SINE Alu -12 121 1 4181 223 68 8 chr6 36015133 36015227 -153264327 - L1MD2 LINE L1 -87 6272 6185 297 0 0 0 chr6 36015227 36015260 -153264294 + (TG)n Simple_repeat Simple_repeat 2 34 0 4181 223 68 8 chr6 36015260 36016111 -153263443 - L1MD2 LINE L1 -174 6185 5258 292 135 14 40 chr6 36016136 36016210 -153263344 - L1MEd LINE L1 -5011 1108 1037 1861 170 23 7 chr6 36016210 36016516 -153263038 - AluJb SINE Alu 0 312 2 377 210 20 120 chr6 36016520 36016720 -153262834 - L1MEd LINE L1 -5169 950 771 311 309 36 36 chr6 36016778 36016946 -153262608 - L1ME3A LINE L1 -5 6165 5998 440 295 77 13 chr6 36018477 36018633 -153260921 - MIR3 SINE MIR -4 204 39 394 293 102 24 chr6 36018791 36018958 -153260596 - MIR SINE MIR -58 204 25 2218 112 24 0 chr6 36018989 36019285 -153260269 - AluSx SINE Alu -9 303 1 660 156 50 78 chr6 36019585 36019726 -153259828 + MER20 DNA MER1_type 1 137 -82 582 248 29 0 chr6 36019735 36019872 -153259682 - MER96 DNA MER1_type? -34 141 1 452 164 0 0 chr6 36019873 36019946 -153259608 + MER20 DNA MER1_type 126 198 -21 679 227 159 0 chr6 36020159 36020322 -153259232 - MER5A DNA MER1_type 0 189 1 458 266 110 7 chr6 36020340 36020494 -153259060 + MER5A DNA MER1_type 14 183 -6 280 294 121 43 chr6 36020752 36020983 -153258571 + L2 LINE L2 2809 3057 -256 537 152 76 0 chr6 36020984 36021076 -153258478 + L2 LINE L2 3214 3312 -1 192 325 35 53 chr6 36021543 36021657 -153257897 + MER5A DNA MER1_type 51 162 -27 774 244 26 30 chr6 36021882 36022116 -153257438 + MIR SINE MIR 6 238 -24 419 268 177 35 chr6 36022286 36022596 -153256958 + L3 LINE CR1 313 666 -911 402 299 0 16 chr6 36022923 36023050 -153256504 + MIR SINE MIR 84 208 -54 1039 269 153 60 chr6 36023206 36023927 -153255627 + L3 LINE CR1 781 1568 -9 218 191 0 24 chr6 36024130 36024172 -153255382 + GA-rich Low_complexity Low_complexity 1 41 0 4294 120 16 26 chr6 36024195 36024400 -153255154 + L1PA16 LINE L1 5332 5538 -628 2043 110 31 17 chr6 36024400 36024691 -153254863 + AluSc SINE Alu 1 295 -14 4294 120 16 26 chr6 36024691 36025176 -153254378 + L1PA16 LINE L1 5538 6143 -23 1675 152 55 10 chr6 36025189 36025478 -153254076 + AluJo SINE Alu 9 310 -2 4350 156 42 4 chr6 36025493 36026249 -153253305 + L1MB8 LINE L1 5386 6170 -8 1544 111 72 102 chr6 36026515 36026616 -153252938 + L1MA9 LINE L1 5990 6093 -219 848 158 0 0 chr6 36026616 36026736 -153252818 + FLAM_A SINE Alu 1 120 -13 1544 111 72 102 chr6 36026736 36026967 -153252587 + L1MA9 LINE L1 6092 6312 0 518 158 42 58 chr6 36026970 36027090 -153252464 + L1MB2 LINE L1 6052 6169 -2 248 366 112 12 chr6 36027135 36027386 -153252168 + L1MC/D LINE L1 5533 5808 -2000 195 321 0 0 chr6 36029335 36029391 -153250163 + MIR SINE MIR 92 147 -61 619 286 42 5 chr6 36029718 36029907 -153249647 + MIR SINE MIR 11 206 -56 204 40 0 0 chr6 36030360 36030385 -153249169 + (T)n Simple_repeat Simple_repeat 1 25 0 263 365 12 12 chr6 36030834 36030919 -153248635 + MIR SINE MIR 4 88 -174 855 306 25 4 chr6 36032730 36032972 -153246582 + MIR SINE MIR 12 258 -4 2585 130 23 32 chr6 36033828 36034267 -153245287 + LTR23 LTR ERV1 1 435 -2 402 162 0 0 chr6 36034267 36034341 -153245213 + (CA)n Simple_repeat Simple_repeat 2 75 0 1389 247 39 63 chr6 36034486 36034554 -153245000 + MLT1J LTR MaLR 1 69 -442 2409 98 0 0 chr6 36034554 36034861 -153244693 + AluSx SINE Alu 1 307 -5 1389 247 39 63 chr6 36034861 36035254 -153244300 + MLT1J LTR MaLR 69 451 -60 854 136 111 40 chr6 36035256 36035455 -153244099 - LTR7 LTR ERV1 0 450 238 382 194 125 119 chr6 36035523 36035631 -153243923 + MIR SINE MIR 88 199 -63 730 109 143 25 chr6 36035631 36035750 -153243804 + FLAM_A SINE Alu 1 133 0 382 194 125 119 chr6 36035750 36035801 -153243753 + MIR SINE MIR 199 248 -14 521 317 41 23 chr6 36036897 36037118 -153242436 + L3 LINE CR1 690 914 -663 950 197 115 18 chr6 36037195 36037413 -153242141 - MIR SINE MIR -14 248 10 628 308 181 33 chr6 36037583 36037896 -153241658 + L3 LINE CR1 932 1324 -253 1710 102 18 0 chr6 36037896 36038122 -153241432 + MER30 DNA MER1_type 1 230 0 628 308 181 33 chr6 36038122 36038227 -153241327 + L3 LINE CR1 1324 1412 -165 288 257 222 35 chr6 36038292 36038436 -153241118 + MIR SINE MIR 3 173 -89 321 256 108 72 chr6 36038953 36039230 -153240324 + MER31-int LTR ERV1 3173 3459 -1477 2109 103 55 0 chr6 36039263 36039553 -153240001 - AluSx SINE Alu -6 306 1 189 0 0 0 chr6 36039749 36039770 -153239784 + (TG)n Simple_repeat Simple_repeat 2 22 0 892 192 84 0 chr6 36039862 36040029 -153239525 + MER58A DNA MER1_type 38 218 -6 22 35 0 0 chr6 36040054 36040083 -153239471 + AT_rich Low_complexity Low_complexity 1 29 0 2176 120 0 3 chr6 36040375 36040674 -153238880 - AluSg SINE Alu -12 298 1 21 81 0 0 chr6 36040879 36040916 -153238638 + AT_rich Low_complexity Low_complexity 1 37 0 2053 103 65 3 chr6 36041038 36041330 -153238224 + AluSg SINE Alu 1 310 0 278 167 0 0 chr6 36043574 36043616 -153235938 + Tigger6 DNA MER2_type 1 42 -1555 2699 187 12 0 chr6 36043617 36044136 -153235418 + L1P LINE L1 4261 4785 -1361 709 190 45 34 chr6 36044330 36044509 -153235045 - L1P LINE L1 -2808 3338 3158 * 2121 150 0 8 chr6 36044491 36044851 -153234703 - L1P LINE L1 -3633 2513 2157 769 242 28 47 chr6 36044952 36045163 -153234391 + MER58A DNA MER1_type 1 207 -17 2572 53 0 3 chr6 36047076 36047377 -153232177 - AluY SINE Alu -11 300 1 224 333 73 10 chr6 36048093 36048189 -153231365 + L2 LINE L2 3142 3243 -29 939 226 0 0 chr6 36048351 36048528 -153231026 + MER5B DNA MER1_type 1 177 -1 190 339 0 16 chr6 36048549 36048611 -153230943 - L2 LINE L2 -5 3267 3207 1013 164 58 88 chr6 36048769 36048995 -153230559 - MER20 DNA MER1_type 0 219 1 230 152 22 22 chr6 36049022 36049068 -153230486 + MER5A DNA MER1_type 142 187 -2 657 206 213 0 chr6 36049082 36049237 -153230317 + MER5A DNA MER1_type 1 188 -1 206 379 8 8 chr6 36049775 36049899 -153229655 + L2 LINE L2 2665 2788 -526 241 191 0 0 chr6 36050242 36050284 -153229270 + MER96B DNA MER1_type? 194 235 -182 3148 136 19 35 chr6 36050426 36050834 -153228720 + MER41E LTR ERV1 5 405 -107 2384 81 0 3 chr6 36050834 36051131 -153228423 - AluY SINE Alu -15 296 1 3148 136 19 35 chr6 36051131 36051238 -153228316 + MER41E LTR ERV1 405 512 0 702 320 26 76 chr6 36051297 36051757 -153227797 + L2 LINE L2 2836 3272 0 231 170 20 140 chr6 36052357 36052457 -153227097 - L1MC4 LINE L1 -1341 6701 6614 286 278 0 11 chr6 36052459 36052549 -153227005 + (CATATA)n Simple_repeat Simple_repeat 1 89 0 371 138 23 146 chr6 36052579 36052622 -153226932 - MER58B DNA MER1_type -2079 341 294 2401 80 0 7 chr6 36052622 36052922 -153226632 + AluSg SINE Alu 5 302 -8 371 138 23 146 chr6 36052922 36052998 -153226556 - MER58B DNA MER1_type -2126 294 99 269 128 0 0 chr6 36052973 36053020 -153226534 - Alu SINE Alu -1 299 253 * 1208 228 188 73 chr6 36053340 36053789 -153225765 + L2 LINE L2 2334 2730 -583 1861 149 0 17 chr6 36053789 36054085 -153225469 - AluSx SINE Alu -21 291 1 1208 228 188 73 chr6 36054085 36054435 -153225119 + L2 LINE L2 2730 3295 -18 2382 98 3 13 chr6 36054435 36054750 -153224804 - AluSx SINE Alu 0 312 1 2035 125 4 0 chr6 36055107 36055388 -153224166 - AluSx SINE Alu -30 282 1 468 318 121 32 chr6 36055913 36056263 -153223291 + L1ME4a LINE L1 5473 5854 -267 356 201 187 30 chr6 36056321 36056455 -153223099 + L1ME4a LINE L1 5964 6118 -3 312 314 0 0 chr6 36056716 36056821 -153222733 + L1MC4a LINE L1 5793 5897 -1911 21 0 0 0 chr6 36056882 36056903 -153222651 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 36057238 36057271 -153222283 + AT_rich Low_complexity Low_complexity 1 33 0 2159 93 0 36 chr6 36057616 36057918 -153221636 - AluSc SINE Alu -18 291 1 637 283 18 0 chr6 36057918 36058084 -153221470 - MER58A DNA MER1_type -54 170 2 375 23 0 0 chr6 36059295 36059339 -153220215 + (TTA)n Simple_repeat Simple_repeat 3 46 0 1866 158 0 7 chr6 36059343 36059641 -153219913 - AluJo SINE Alu -16 296 1 216 0 0 0 chr6 36060648 36060672 -153218882 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 216 216 0 0 chr6 36060686 36060737 -153218817 + (TG)n Simple_repeat Simple_repeat 2 52 0 414 0 0 0 chr6 36060897 36060943 -153218611 + (CA)n Simple_repeat Simple_repeat 2 47 0 429 20 0 0 chr6 36061605 36061655 -153217899 + (TA)n Simple_repeat Simple_repeat 2 51 0 269 252 79 39 chr6 36061969 36062096 -153217458 - L1ME4a LINE L1 -31 6090 5959 395 303 52 58 chr6 36062163 36062318 -153217236 - L2 LINE L2 0 3272 3119 361 303 68 28 chr6 36063570 36063821 -153215733 + L2 LINE L2 2142 2402 -912 39 22 0 0 chr6 36063925 36063971 -153215583 + AT_rich Low_complexity Low_complexity 1 46 0 477 194 184 0 chr6 36064019 36064117 -153215437 + MLT1D LTR MaLR 3 118 -387 814 75 0 9 chr6 36064120 36064226 -153215328 - AluSg SINE Alu -205 105 1 826 176 110 47 chr6 36064226 36064577 -153214977 + MLT1D LTR MaLR 105 505 0 289 331 87 9 chr6 36064769 36064942 -153214612 - MIR SINE MIR -17 191 17 2358 157 45 17 chr6 36066021 36066441 -153213113 + MSTB1 LTR MaLR 1 432 0 300 339 37 95 chr6 36066654 36066896 -153212658 - L2 LINE L2 -3 3269 3042 29 0 0 0 chr6 36067106 36067135 -153212419 + AT_rich Low_complexity Low_complexity 1 29 0 224 232 0 14 chr6 36067161 36067230 -153212324 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 4681 182 20 12 chr6 36067611 36068825 -153210729 + L1MB7 LINE L1 4960 6184 0 486 262 35 99 chr6 36069294 36069607 -153209947 - MER102a DNA MER1_type -34 296 4 277 284 0 25 chr6 36069666 36069747 -153209807 - L3 LINE CR1 -10 1567 1489 358 310 23 23 chr6 36070033 36070162 -153209392 - MIR3 SINE MIR -13 195 67 2214 98 13 10 chr6 36071807 36072112 -153207442 - AluSx SINE Alu -2 310 5 1973 88 91 0 chr6 36072973 36073236 -153206318 + AluSx SINE Alu 6 292 -20 181 333 0 0 chr6 36073430 36073484 -153206070 + L2 LINE L2 3004 3057 -215 492 237 62 23 chr6 36074463 36074640 -153204914 - L1MC5 LINE L1 -492 7469 7286 708 241 83 60 chr6 36074763 36075132 -153204422 - L1MC4 LINE L1 -740 7221 6880 582 261 147 50 chr6 36075214 36075398 -153204156 + L1ME4a LINE L1 5548 5713 -408 2337 82 3 22 chr6 36075398 36075714 -153203840 + AluY SINE Alu 1 310 -1 582 261 147 50 chr6 36075714 36076034 -153203520 + L1ME4a LINE L1 5713 6101 -20 2272 110 0 7 chr6 36076761 36077069 -153202485 - AluSx SINE Alu -6 306 1 2972 106 10 2 chr6 36077296 36077703 -153201851 + L1PB1 LINE L1 5740 6149 -2 2103 166 32 6 chr6 36077983 36078396 -153201158 - L1ME1 LINE L1 -3 6163 5746 1761 151 17 3 chr6 36078448 36078740 -153200814 - AluJo SINE Alu 0 312 17 31 0 0 0 chr6 36083041 36083072 -153196482 + AT_rich Low_complexity Low_complexity 1 31 0 598 265 50 46 chr6 36084318 36084537 -153195017 + MIR SINE MIR 31 250 -12 298 186 0 119 chr6 36084561 36084679 -153194875 + MIR SINE MIR 109 212 -50 2221 85 0 4 chr6 36084917 36085198 -153194356 + AluSc SINE Alu 1 280 -29 1165 41 0 20 chr6 36085198 36085344 -153194210 + AluY SINE Alu 168 310 -1 1416 153 82 125 chr6 36086430 36086594 -153192960 + L1ME1 LINE L1 5779 5948 -218 2096 128 6 6 chr6 36086594 36086906 -153192648 - AluSp SINE Alu 0 313 2 1803 140 46 14 chr6 36086908 36087193 -153192361 - 7SLRNA srpRNA srpRNA -26 294 1 1416 153 82 125 chr6 36087193 36087425 -153192129 + L1ME1 LINE L1 5949 6161 -5 213 39 0 0 chr6 36087467 36087493 -153192061 + (TA)n Simple_repeat Simple_repeat 2 27 0 515 105 53 0 chr6 36087610 36087743 -153191811 + (TA)n Simple_repeat Simple_repeat 1 140 0 1502 167 7 19 chr6 36088862 36089132 -153190422 + AluJo SINE Alu 30 296 -16 2660 234 66 31 chr6 36089170 36090001 -153189553 - L1MC4a LINE L1 -840 6968 6109 23 33 0 0 chr6 36090001 36090031 -153189523 + AT_rich Low_complexity Low_complexity 1 30 0 1533 173 28 28 chr6 36092295 36092603 -153186951 - AluJo SINE Alu 0 308 1 181 189 0 27 chr6 36092974 36093011 -153186543 - L2 LINE L2 -34 3238 3203 * 599 289 14 24 chr6 36092981 36093192 -153186362 - MIR SINE MIR -34 228 20 21 0 0 0 chr6 36093549 36093570 -153185984 + AT_rich Low_complexity Low_complexity 1 21 0 557 226 222 29 chr6 36093791 36094066 -153185488 + L1MC4 LINE L1 7715 8042 0 476 294 5 64 chr6 36094140 36094160 -153185394 + MER117 DNA MER1_type 1 21 -176 3323 180 110 2 chr6 36094160 36094750 -153184804 + MLT1E1 LTR MaLR 1 654 0 476 294 5 64 chr6 36094750 36094916 -153184638 + MER117 DNA MER1_type 21 176 -21 2248 105 7 0 chr6 36096031 36096327 -153183227 - AluSq SINE Alu -15 298 1 656 282 40 67 chr6 36096446 36096496 -153183058 + Charlie8 DNA MER1_type 76 126 -2291 2310 99 7 0 chr6 36096496 36096799 -153182755 - AluSq SINE Alu -5 308 4 656 282 40 67 chr6 36096799 36097046 -153182508 + Charlie8 DNA MER1_type 126 365 -2052 435 233 0 0 chr6 36098335 36098425 -153181129 + L2 LINE L2 3224 3313 0 1531 185 73 0 chr6 36098737 36099024 -153180530 + AluJo SINE Alu 1 308 -4 226 300 136 0 chr6 36099553 36099716 -153179838 + MIR SINE MIR 4 192 -42 532 295 71 27 chr6 36099793 36100017 -153179537 + MIR SINE MIR 12 245 -17 338 221 47 47 chr6 36100028 36100114 -153179440 + MIR SINE MIR 68 153 -55 1372 155 9 0 chr6 36100137 36100350 -153179204 - MLT1D LTR MaLR 0 505 291 10316 175 16 68 chr6 36100593 36102907 -153176647 + L1PA16 LINE L1 2746 5178 -2426 1851 171 10 3 chr6 36102907 36103212 -153176342 - THE1B LTR MaLR 0 364 58 10316 175 16 68 chr6 36103212 36103364 -153176190 + L1PA16 LINE L1 5178 5336 -2268 1909 161 0 23 chr6 36103364 36103674 -153175880 + AluJo SINE Alu 3 305 -7 10316 175 16 68 chr6 36103674 36106092 -153173462 + L1PA16 LINE L1 5336 7604 0 211 362 14 43 chr6 36107395 36107533 -153172021 - MIR SINE MIR -11 251 118 776 233 116 11 chr6 36107568 36107757 -153171797 - MIR SINE MIR -51 211 3 247 331 69 8 chr6 36107868 36107998 -153171556 - MIR3 SINE MIR 0 208 71 197 344 102 6 chr6 36108245 36108402 -153171152 + L2 LINE L2 2358 2529 -785 3617 109 19 23 chr6 36108406 36109021 -153170533 - MER4B LTR ERV1 0 779 1 1713 219 110 81 chr6 36109243 36109963 -153169591 - LTR1B LTR ERV1 -85 741 1 382 320 62 6 chr6 36110478 36110656 -153168898 - MIR3 SINE MIR -1 207 20 274 280 57 117 chr6 36111052 36111140 -153168414 - L2 LINE L2 -50 3222 3130 1232 196 106 40 chr6 36111140 36111211 -153168343 - MER2 DNA MER2_type 0 344 279 2472 63 3 0 chr6 36111211 36111512 -153168042 + AluY SINE Alu 1 302 -9 1232 196 106 40 chr6 36111512 36111762 -153167792 - MER2 DNA MER2_type -65 279 2 274 280 57 117 chr6 36111762 36112059 -153167495 - L2 LINE L2 -142 3130 2860 263 270 0 0 chr6 36112613 36112676 -153166878 - MIR SINE MIR -10 252 190 515 211 200 0 chr6 36112778 36112873 -153166681 - MER81 DNA DNA 0 114 1 295 301 162 46 chr6 36113151 36113546 -153166008 + LTR67 LTR ERVL 105 545 -12 455 270 17 0 chr6 36113596 36113711 -153165843 + MER117 DNA MER1_type 47 163 -34 765 278 0 4 chr6 36114863 36115090 -153164464 + L1M4 LINE L1 4153 4378 -1768 1979 146 0 28 chr6 36115095 36115239 -153164315 + AluJo SINE Alu 1 148 -164 2568 62 0 3 chr6 36115239 36115544 -153164010 + AluY SINE Alu 1 304 -7 1979 146 0 28 chr6 36115544 36115720 -153163834 + AluJo SINE Alu 148 312 0 237 33 0 0 chr6 36115739 36115769 -153163785 + (CAA)n Simple_repeat Simple_repeat 1 30 0 498 338 57 9 chr6 36115934 36116173 -153163381 + MIR SINE MIR 10 259 -3 2050 180 189 2 chr6 36116590 36116984 -153162570 + MLT2B2 LTR ERVL 1 485 -30 479 71 47 0 chr6 36116984 36117069 -153162485 + (TCTA)n Simple_repeat Simple_repeat 3 91 0 2050 180 189 2 chr6 36117069 36117108 -153162446 + MLT2B2 LTR ERVL 485 515 0 742 254 106 35 chr6 36117280 36117563 -153161991 + LTR16A1 LTR ERVL 155 457 0 1155 189 91 4 chr6 36118070 36118206 -153161348 - L1MA9 LINE L1 -4 6308 6185 438 88 0 0 chr6 36118206 36118274 -153161280 + (TG)n Simple_repeat Simple_repeat 1 68 0 1155 189 91 4 chr6 36118274 36118391 -153161163 - L1MA9 LINE L1 -127 6185 6033 1243 307 139 6 chr6 36118923 36119441 -153160113 - MLT1K LTR MaLR 0 588 2 1688 108 14 0 chr6 36119668 36119890 -153159664 + AluSp SINE Alu 1 225 -88 200 278 137 41 chr6 36120206 36120360 -153159194 - MIR SINE MIR -68 140 5 522 267 23 0 chr6 36120556 36120687 -153158867 + MER94 DNA DNA 1 134 0 290 246 29 0 chr6 36120998 36121067 -153158487 + MIR SINE MIR 79 149 -113 * 639 309 32 0 chr6 36121063 36121251 -153158303 - MIR SINE MIR -1 261 68 2310 122 0 0 chr6 36121371 36121675 -153157879 - AluSx SINE Alu -8 304 1 554 277 185 5 chr6 36121982 36122177 -153157377 + MIR SINE MIR 32 261 -1 2413 86 0 3 chr6 36122198 36122502 -153157052 + AluSq SINE Alu 1 303 -10 22 0 0 0 chr6 36122799 36122821 -153156733 + AT_rich Low_complexity Low_complexity 1 22 0 225 296 0 42 chr6 36123161 36123232 -153156322 + MIR SINE MIR 85 152 -110 1086 65 0 0 chr6 36123689 36123828 -153155726 - AluY SINE Alu -11 300 162 180 0 0 0 chr6 36125584 36125604 -153153950 + (A)n Simple_repeat Simple_repeat 1 20 0 595 202 0 18 chr6 36126245 36126359 -153153195 + FLAM_A SINE Alu 4 115 -18 487 94 0 24 chr6 36126363 36126448 -153153106 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 213 237 0 0 chr6 36127821 36127880 -153151674 + (CA)n Simple_repeat Simple_repeat 2 60 0 15167 122 34 24 chr6 36127894 36129418 -153150136 - Tigger1 DNA MER2_type 0 2418 911 2578 89 12 3 chr6 36129418 36129755 -153149799 - L1PB1 LINE L1 0 6151 5812 6324 70 11 2 chr6 36129759 36130883 -153148671 - L1PA7 LINE L1 -3 6151 4955 15167 122 34 24 chr6 36130883 36131747 -153147807 - Tigger1 DNA MER2_type -1509 909 1 559 198 0 0 chr6 36132054 36132140 -153147414 - FRAM/FAM SINE Alu -98 78 1 1101 238 129 75 chr6 36132143 36132340 -153147214 - Charlie1a DNA MER1_type -2254 507 322 2475 75 0 0 chr6 36132340 36132647 -153146907 - AluY SINE Alu -2 309 3 1101 238 129 75 chr6 36132647 36132929 -153146625 - Charlie1a DNA MER1_type -2439 322 2 2291 100 13 0 chr6 36132932 36133231 -153146323 + AluSg SINE Alu 1 303 -7 1650 215 55 21 chr6 36133231 36133703 -153145851 - L1ME LINE L1 -350 5812 5297 1633 239 130 9 chr6 36133819 36134279 -153145275 - L1ME1 LINE L1 -19 6147 5632 2000 252 106 76 chr6 36134289 36134925 -153144629 - L1ME LINE L1 -982 5164 4549 2264 118 0 0 chr6 36134925 36135229 -153144325 + AluSx SINE Alu 1 304 -8 2000 252 106 76 chr6 36135229 36135841 -153143713 - L1ME LINE L1 -1597 4549 3861 1453 144 32 60 chr6 36135841 36136125 -153143429 - AluJb SINE Alu -34 278 3 2000 252 106 76 chr6 36136125 36136370 -153143184 - L1ME LINE L1 -2285 3861 3625 377 243 136 11 chr6 36136602 36136779 -153142775 - L2 LINE L2 -737 2577 2379 359 254 63 16 chr6 36136787 36136913 -153142641 - L2 LINE L2 -2305 1009 878 660 260 128 0 chr6 36137996 36138200 -153141354 - MIR SINE MIR -4 258 29 204 306 12 47 chr6 36138888 36138973 -153140581 - MIR3 SINE MIR -21 187 106 280 370 143 0 chr6 36139049 36139168 -153140386 - L2 LINE L2 -38 3234 3099 2080 110 7 3 chr6 36139264 36139554 -153140000 - AluSq SINE Alu -22 291 1 2058 121 4 0 chr6 36139911 36140192 -153139362 - AluSx SINE Alu -30 282 1 468 318 121 32 chr6 36140717 36141067 -153138487 + L1ME4a LINE L1 5473 5854 -267 356 201 187 30 chr6 36141125 36141259 -153138295 + L1ME4a LINE L1 5964 6118 -3 312 314 0 0 chr6 36141520 36141625 -153137929 + L1MC4a LINE L1 5793 5897 -1911 21 0 0 0 chr6 36141686 36141707 -153137847 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 36142042 36142075 -153137479 + AT_rich Low_complexity Low_complexity 1 33 0 851 183 221 0 chr6 36142995 36143203 -153136351 + MIR SINE MIR 8 261 -1 295 299 131 19 chr6 36143374 36143481 -153136073 + MIR3 SINE MIR 15 133 -75 493 294 103 90 chr6 36143947 36144492 -153135062 - L2 LINE L2 -756 2558 2007 287 266 0 0 chr6 36145076 36145155 -153134399 + Charlie8 DNA MER1_type 74 152 -2265 313 268 24 39 chr6 36145377 36145504 -153134050 + HAL1 LINE L1 1464 1588 -919 236 255 57 78 chr6 36145547 36145739 -153133815 + HAL1 LINE L1 1761 1948 -559 23 54 0 0 chr6 36146035 36146072 -153133482 + AT_rich Low_complexity Low_complexity 1 37 0 913 275 29 8 chr6 36146141 36146385 -153133169 + MIR SINE MIR 10 258 -4 2243 107 3 0 chr6 36146488 36146786 -153132768 - AluSq SINE Alu -12 301 3 483 182 67 120 chr6 36147481 36147690 -153131864 + L1MC3 LINE L1 7581 7778 -7 330 132 0 0 chr6 36147690 36147743 -153131811 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 248 204 0 19 chr6 36149957 36150011 -153129543 + L2 LINE L2 3261 3313 0 270 0 0 0 chr6 36150365 36150395 -153129159 + (A)n Simple_repeat Simple_repeat 1 30 0 268 313 103 43 chr6 36150396 36150747 -153128807 + L2 LINE L2 2503 2874 -440 357 255 112 10 chr6 36150761 36150859 -153128695 + L2 LINE L2 3202 3309 -4 494 280 8 23 chr6 36151167 36151299 -153128255 + MER5A DNA MER1_type 60 189 0 534 269 141 22 chr6 36151513 36151656 -153127898 + MER112 DNA MER1_type 1 126 -134 225 94 0 0 chr6 36151656 36151688 -153127866 + (CTATT)n Simple_repeat Simple_repeat 4 35 0 534 269 141 22 chr6 36151688 36151771 -153127783 + MER112 DNA MER1_type 126 254 -6 270 373 16 10 chr6 36151788 36151981 -153127573 - L2 LINE L2 -652 2662 2469 2320 104 0 0 chr6 36152504 36152802 -153126752 + AluSg SINE Alu 1 298 -12 531 322 55 5 chr6 36153395 36153597 -153125957 - MIR SINE MIR -27 235 24 2416 78 0 23 chr6 36153692 36154000 -153125554 + AluSq SINE Alu 1 301 -12 1296 174 5 9 chr6 36154051 36154293 -153125261 - AluJo SINE Alu 0 307 67 2133 113 7 3 chr6 36154303 36154596 -153124958 - AluSx SINE Alu -18 294 1 198 291 93 23 chr6 36155163 36155249 -153124305 + MIR SINE MIR 97 188 -74 297 281 175 6 chr6 36155327 36155622 -153123932 + L2 LINE L2 2484 2826 -488 1925 143 0 37 chr6 36156674 36156995 -153122559 + AluSx SINE Alu 2 310 -2 216 0 0 0 chr6 36157118 36157142 -153122412 + (T)n Simple_repeat Simple_repeat 1 24 0 3226 202 31 85 chr6 36157142 36158432 -153121122 - L1ME1 LINE L1 -36 6130 4930 1869 122 0 44 chr6 36158432 36158726 -153120828 + AluY SINE Alu 1 281 -30 3226 202 31 85 chr6 36158726 36159183 -153120371 - L1ME1 LINE L1 -1236 4930 4450 3830 156 72 88 chr6 36160105 36160836 -153118718 - Charlie5 DNA MER1_type -1 2623 1915 1411 192 67 88 chr6 36160836 36161311 -153118243 + MLT1C LTR MaLR 1 465 -2 3830 156 72 88 chr6 36161311 36161688 -153117866 - Charlie5 DNA MER1_type -709 1915 1533 483 265 83 28 chr6 36161765 36161946 -153117608 + MIR SINE MIR 2 192 -70 492 268 98 7 chr6 36162786 36162939 -153116615 + MIR SINE MIR 10 176 -86 1090 269 67 53 chr6 36162948 36163439 -153116115 - L2 LINE L2 0 3313 2816 248 0 31 0 chr6 36168051 36168083 -153111471 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1351 172 26 127 chr6 36168568 36168934 -153110620 + MER58B DNA MER1_type 1 328 -13 1038 237 40 4 chr6 36169034 36169287 -153110267 - L1PB4 LINE L1 -1 6155 5894 1906 163 67 9 chr6 36171305 36171648 -153107906 + MER47B DNA MER2_type 56 418 0 232 204 37 0 chr6 36171790 36171844 -153107710 + L1ME3A LINE L1 6035 6090 -80 541 278 195 10 chr6 36172076 36172281 -153107273 + MIR SINE MIR 20 262 0 276 83 0 0 chr6 36172478 36172514 -153107040 - U2 snRNA snRNA -152 36 1 258 262 78 35 chr6 36173151 36173292 -153106262 + L1ME LINE L1 5409 5555 -566 204 40 0 0 chr6 36173350 36173375 -153106179 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 260 214 113 48 chr6 36173572 36173740 -153105814 - L1ME3A LINE L1 -232 5938 5760 743 199 0 0 chr6 36173841 36173972 -153105582 + FLAM_A SINE Alu 1 131 -2 290 296 120 11 chr6 36174017 36174291 -153105263 - L1ME3A LINE L1 -591 5587 5284 340 318 25 61 chr6 36174297 36174495 -153105059 - L1ME3A LINE L1 -869 5277 5087 385 242 11 0 chr6 36174917 36175012 -153104542 + L1MC4 LINE L1 2570 2665 -3481 3702 195 126 31 chr6 36175054 36175221 -153104333 + L1MC4 LINE L1 3807 3957 -2189 2344 91 7 0 chr6 36175221 36175518 -153104036 + AluSx SINE Alu 1 299 -13 3702 195 126 31 chr6 36175518 36176517 -153103037 + L1MC4 LINE L1 3957 5084 -1062 1693 172 0 4 chr6 36176546 36176813 -153102741 + AluJb SINE Alu 8 273 -39 343 189 116 0 chr6 36176920 36177015 -153102539 + L1MC4 LINE L1 5088 5193 -953 * 1540 223 147 18 chr6 36177012 36177563 -153101991 + L1MC4 LINE L1 5478 6099 -1943 * 1941 156 23 23 chr6 36177243 36177640 -153101914 + L1MB7 LINE L1 5767 6163 -21 216 261 0 0 chr6 36177644 36177709 -153101845 + GA-rich Low_complexity Low_complexity 2 66 0 30 0 0 0 chr6 36177812 36177842 -153101712 + AT_rich Low_complexity Low_complexity 1 30 0 502 299 51 56 chr6 36178222 36178456 -153101098 - MIR SINE MIR -29 233 1 1867 124 0 8 chr6 36179208 36179467 -153100087 - AluSq SINE Alu -56 257 1 314 272 98 54 chr6 36181093 36181277 -153098277 + L1MC4a LINE L1 5870 6061 -1747 5345 123 16 13 chr6 36181306 36182124 -153097430 + HSMAR2 DNA Mariner 263 1082 -220 2589 61 0 0 chr6 36182124 36182435 -153097119 + AluY SINE Alu 1 311 0 520 205 121 6 chr6 36182911 36183077 -153096477 - MER53 DNA DNA -4 185 1 840 272 15 42 chr6 36184124 36184385 -153095169 - MIR SINE MIR -4 258 5 509 186 8 25 chr6 36184654 36184772 -153094782 - MER53 DNA DNA -73 116 1 577 134 21 10 chr6 36184810 36184907 -153094647 + MER4A LTR ERV1 1 98 -566 1914 130 0 24 chr6 36184907 36185261 -153094293 + MER4A LTR ERV1 261 664 0 2470 76 104 51 chr6 36185264 36185921 -153093633 + MER4A-int LTR ERV1 1 807 -5791 315 49 0 0 chr6 36185922 36185963 -153093591 + (CA)n Simple_repeat Simple_repeat 1 41 0 201 121 0 0 chr6 36185995 36186028 -153093526 + (A)n Simple_repeat Simple_repeat 1 33 0 267 75 0 50 chr6 36186046 36186086 -153093468 + LTR49 LTR ERV1 276 313 -282 7852 114 62 28 chr6 36186106 36187208 -153092346 + MER4A-int LTR ERV1 993 2056 -4542 2130 104 0 7 chr6 36187208 36187487 -153092067 + AluSq SINE Alu 1 277 -36 300 27 0 0 chr6 36187495 36187532 -153092022 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 7852 114 62 28 chr6 36187532 36187873 -153091681 + MER4A-int LTR ERV1 2062 2495 -4103 1323 144 68 40 chr6 36187873 36188123 -153091431 - LTR8 LTR ERV1 -434 257 1 2780 142 79 85 chr6 36188123 36188568 -153090986 + MER4A-int LTR ERV1 2737 3183 -3493 2301 122 0 0 chr6 36188568 36188880 -153090674 + AluSx SINE Alu 1 312 0 2780 142 79 85 chr6 36188880 36189286 -153090268 + MER4A-int LTR ERV1 3183 4310 -2366 16325 97 56 19 chr6 36189289 36191951 -153087603 + MER4A-int LTR ERV1 3837 6596 -2 430 205 0 12 chr6 36191968 36192051 -153087503 + MER4A LTR ERV1 17 98 -566 1809 147 26 11 chr6 36192051 36192391 -153087163 + MER4A LTR ERV1 261 664 0 231 189 0 0 chr6 36192849 36192902 -153086652 + G-rich Low_complexity Low_complexity 4 56 0 258 160 0 0 chr6 36193056 36193106 -153086448 + (CA)n Simple_repeat Simple_repeat 2 51 0 462 49 0 0 chr6 36193187 36193248 -153086306 + (CA)n Simple_repeat Simple_repeat 1 61 0 22 56 0 0 chr6 36197517 36197553 -153082001 + AT_rich Low_complexity Low_complexity 1 36 0 488 219 66 70 chr6 36197640 36197762 -153081792 + MER96B DNA MER1_type? 191 313 -104 2286 112 0 0 chr6 36197762 36198067 -153081487 + AluSx SINE Alu 1 305 -7 488 219 66 70 chr6 36198067 36198172 -153081382 + MER96B DNA MER1_type? 313 417 0 270 208 0 0 chr6 36198850 36198903 -153080651 + L2 LINE L2 3261 3313 0 3355 220 30 53 chr6 36198976 36199234 -153080320 + L1M4 LINE L1 3039 3301 -2845 837 134 0 0 chr6 36199234 36199353 -153080201 + AluJo/FLAM SINE Alu 1 119 -183 1887 157 0 13 chr6 36199355 36199655 -153079899 + AluJb SINE Alu 4 299 -13 3355 220 30 53 chr6 36199655 36200389 -153079165 + L1M4 LINE L1 3302 4011 -2135 1107 260 3 24 chr6 36200389 36200528 -153079026 + AluJo SINE Alu 1 141 -171 2299 104 3 0 chr6 36200528 36200826 -153078728 + AluSx SINE Alu 2 300 -12 1107 260 3 24 chr6 36200826 36200974 -153078580 + AluJo SINE Alu 141 282 -30 207 88 0 0 chr6 36200977 36201011 -153078543 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 897 229 10 0 chr6 36201026 36201231 -153078323 + L1M4 LINE L1 4044 4250 -1896 * 1769 161 124 58 chr6 36201230 36201665 -153077889 + L1MC3 LINE L1 7134 7597 -188 1870 274 48 60 chr6 36201666 36201925 -153077629 + L1ME3A LINE L1 4132 4393 -1777 1935 89 19 0 chr6 36201925 36202184 -153077370 + AluSq SINE Alu 44 307 -6 1870 274 48 60 chr6 36202184 36203837 -153075717 + L1ME3A LINE L1 4393 6018 -152 3760 248 57 43 chr6 36203838 36205699 -153073855 + L1MB7 LINE L1 2969 5049 -1097 1585 223 108 34 chr6 36205704 36206206 -153073348 - LTR55 LTR ERV -3 545 7 569 117 0 0 chr6 36206207 36206284 -153073270 + MADE1 DNA Mariner 3 79 -1 3813 178 48 31 chr6 36206292 36206574 -153072980 + L1MB7 LINE L1 5046 5322 -862 863 172 0 8 chr6 36206574 36206708 -153072846 + FLAM_A SINE Alu 1 133 0 3813 178 48 31 chr6 36206708 36207535 -153072019 + L1MB7 LINE L1 5322 6184 0 259 197 145 105 chr6 36207542 36207694 -153071860 + L1ME3A LINE L1 6005 6162 -8 864 196 34 47 chr6 36208093 36208308 -153071246 - L1MD3 LINE L1 -9 7986 7770 186 43 0 0 chr6 36208308 36208331 -153071223 + (TG)n Simple_repeat Simple_repeat 2 24 0 864 196 34 47 chr6 36208331 36208384 -153071170 - L1MD3 LINE L1 -225 7770 6084 29 0 0 0 chr6 36209435 36209464 -153070090 + AT_rich Low_complexity Low_complexity 1 29 0 251 351 90 0 chr6 36209793 36209904 -153069650 - L2 LINE L2 -1 3271 3151 2708 147 166 42 chr6 36210377 36210927 -153068627 + LTR35 LTR ERV1 1 618 0 844 209 0 25 chr6 36211993 36212156 -153067398 + FRAM SINE Alu 4 162 -14 373 252 27 31 chr6 36212157 36212336 -153067218 - L1MD2 LINE L1 -167 6075 5894 835 301 173 30 chr6 36212428 36213035 -153066519 + L2 LINE L2 2001 2694 -620 502 190 60 0 chr6 36213049 36213149 -153066405 - L1MA2 LINE L1 0 6304 6199 3690 96 54 19 chr6 36213428 36214112 -153065442 + MER11A LTR ERVK 1 752 -484 43246 55 4 2 chr6 36214120 36220255 -153059299 + L1PA5 LINE L1 11 6152 -2 204 22 43 65 chr6 36220266 36220312 -153059242 + (TAA)n Simple_repeat Simple_repeat 1 45 0 377 113 0 84 chr6 36220315 36220386 -153059168 + MER11A LTR ERVK 912 976 -290 2291 78 6 58 chr6 36220395 36220742 -153058812 + MER11A LTR ERVK 937 1265 -1 418 256 135 46 chr6 36220751 36220867 -153058687 + L2 LINE L2 3008 3112 -201 2336 65 0 45 chr6 36220867 36221176 -153058378 - AluY SINE Alu -16 295 1 418 256 135 46 chr6 36221176 36221340 -153058214 + L2 LINE L2 3112 3313 0 411 21 0 0 chr6 36222661 36222709 -153056845 + (TG)n Simple_repeat Simple_repeat 2 49 0 180 125 0 0 chr6 36323984 36324016 -152955538 + (T)n Simple_repeat Simple_repeat 1 32 0 427 291 163 31 chr6 36324667 36324956 -152954598 - L2 LINE L2 -438 2876 2550 2504 73 0 6 chr6 36325058 36325371 -152954183 + AluY SINE Alu 1 311 0 228 122 143 0 chr6 36325383 36325432 -152954122 - MLT1J LTR MaLR -58 453 398 2648 55 0 3 chr6 36325622 36325930 -152953624 - AluY SINE Alu -4 307 1 892 216 226 5 chr6 36326037 36326423 -152953131 - MER90 LTR ERV1 -140 435 9 2123 120 0 13 chr6 36326527 36326826 -152952728 + AluSx SINE Alu 1 295 -17 289 296 22 59 chr6 36326870 36327005 -152952549 - L2 LINE L2 -1164 2150 2021 204 217 0 87 chr6 36327007 36327076 -152952478 - MIR SINE MIR -24 238 176 1730 63 5 5 chr6 36327102 36327308 -152952246 - AluSq SINE Alu -107 206 1 1072 269 106 44 chr6 36327316 36327714 -152951840 - L2 LINE L2 -3 3310 2938 1624 187 53 3 chr6 36327714 36327998 -152951556 + AluJo SINE Alu 1 298 -14 1072 269 106 44 chr6 36327998 36328145 -152951409 - L2 LINE L2 -375 2938 2802 2411 95 0 0 chr6 36328145 36328449 -152951105 - AluSg SINE Alu -6 304 1 1072 269 106 44 chr6 36328449 36328627 -152950927 - L2 LINE L2 -511 2802 2530 983 240 43 43 chr6 36328623 36328927 -152950627 + L2 LINE L2 2398 2701 -613 * 2449 87 0 6 chr6 36328953 36329264 -152950290 + AluSg SINE Alu 1 309 -1 816 167 0 15 chr6 36329264 36329396 -152950158 - AluJo/FLAM SINE Alu -182 130 1 2246 75 0 4 chr6 36329405 36329715 -152949839 - AluY SINE Alu 0 313 5 854 296 113 21 chr6 36329715 36330264 -152949290 + L2 LINE L2 2683 3313 0 1123 286 206 11 chr6 36330288 36330855 -152948699 - L2 LINE L2 -807 2507 1830 181 264 94 0 chr6 36330871 36330924 -152948630 - MIR SINE MIR -158 104 47 315 146 21 188 chr6 36330925 36331069 -152948485 + L1MA10 LINE L1 6215 6334 0 606 327 125 56 chr6 36332583 36332846 -152946708 - L2 LINE L2 -9 3263 3020 1759 170 11 0 chr6 36332846 36333123 -152946431 - AluJo SINE Alu -21 291 12 606 327 125 56 chr6 36333123 36334290 -152945264 - L2 LINE L2 -252 3020 1698 1399 154 75 72 chr6 36334464 36334770 -152944784 - AluJo SINE Alu -5 307 1 186 305 92 38 chr6 36335094 36335225 -152944329 - L2 LINE L2 -341 2972 2835 2340 99 7 0 chr6 36335396 36335700 -152943854 - AluSg SINE Alu -4 306 1 25 0 0 0 chr6 36335700 36335725 -152943829 + AT_rich Low_complexity Low_complexity 1 25 0 198 347 28 0 chr6 36336043 36336115 -152943439 + L2 LINE L2 2275 2348 -966 1830 182 7 19 chr6 36336119 36336426 -152943128 + AluJo SINE Alu 1 303 -9 210 318 57 66 chr6 36336468 36336608 -152942946 + L2 LINE L2 2341 2481 -833 2427 100 0 3 chr6 36336608 36336919 -152942635 - AluSx SINE Alu -2 310 1 210 318 57 66 chr6 36336919 36337102 -152942452 + L2 LINE L2 2481 2724 -590 602 310 175 28 chr6 36337141 36337563 -152941991 + L2 LINE L2 2830 3313 0 614 151 126 8 chr6 36337907 36338026 -152941528 + FLAM_C SINE Alu 1 133 0 219 69 0 0 chr6 36338215 36338244 -152941310 + (CAG)n Simple_repeat Simple_repeat 2 30 0 2358 103 0 0 chr6 36339050 36339352 -152940202 + AluSg SINE Alu 1 302 -8 343 203 40 0 chr6 36339653 36339727 -152939827 + Tigger5 DNA MER2_type 1 77 -2246 336 203 0 0 chr6 36339727 36339786 -152939768 - Tigger5 DNA MER2_type -2 2321 2263 2530 83 0 0 chr6 36339786 36340086 -152939468 - AluSc SINE Alu -9 300 1 231 228 18 0 chr6 36340104 36340161 -152939393 + Tigger5 DNA MER2_type 2266 2323 0 2772 23 3 7 chr6 36340395 36340704 -152938850 + AluY SINE Alu 1 308 -3 1923 165 0 7 chr6 36340997 36341300 -152938254 - AluJb SINE Alu -6 306 6 808 232 79 21 chr6 36341301 36341491 -152938063 - MER58C DNA MER1_type -5 210 10 472 337 55 6 chr6 36341508 36341689 -152937865 + MIR3 SINE MIR 19 208 0 2352 109 0 0 chr6 36341728 36342030 -152937524 - AluY SINE Alu -7 304 3 2583 69 0 0 chr6 36342380 36342685 -152936869 - AluY SINE Alu -6 305 1 216 200 0 0 chr6 36342728 36342773 -152936781 + GA-rich Low_complexity Low_complexity 3 47 0 2044 151 3 0 chr6 36343024 36343322 -152936232 - AluJb SINE Alu -13 299 1 844 153 0 8 chr6 36345095 36345219 -152934335 + FLAM_C SINE Alu 1 123 -20 1224 191 5 0 chr6 36345237 36345441 -152934113 + AluJb SINE Alu 85 289 -23 1878 110 92 0 chr6 36347322 36347595 -152931959 + AluSx SINE Alu 1 298 -14 592 151 0 21 chr6 36347598 36347691 -152931863 + AluJ/FLAM SINE Alu 2 92 -220 2073 109 39 3 chr6 36347691 36347975 -152931579 + AluSp SINE Alu 1 294 -19 1507 139 9 22 chr6 36347976 36348206 -152931348 + AluSg/x SINE Alu 80 306 -4 2332 89 10 0 chr6 36348221 36348523 -152931031 - AluSg SINE Alu -5 305 1 279 221 188 19 chr6 36348523 36348677 -152930877 - L1ME4a LINE L1 -108 6013 5834 2291 90 7 0 chr6 36348692 36348980 -152930574 - AluY SINE Alu -20 291 2 255 242 33 0 chr6 36349002 36349093 -152930461 - L1ME4a LINE L1 -525 5596 5503 1835 150 24 24 chr6 36349335 36349628 -152929926 - AluSx SINE Alu -19 293 1 2067 47 0 0 chr6 36349706 36349942 -152929612 + AluY SINE Alu 63 298 -13 2196 148 7 0 chr6 36451870 36452180 -152827374 - AluSx SINE Alu 0 312 1 1566 163 63 53 chr6 36452180 36452479 -152827075 - AluJo SINE Alu -9 303 1 2161 103 21 7 chr6 36453352 36453643 -152825911 + AluSg SINE Alu 1 295 -15 548 191 63 24 chr6 36453700 36453826 -152825728 + MIR SINE MIR 85 215 -47 208 51 26 26 chr6 36453841 36453880 -152825674 + (TA)n Simple_repeat Simple_repeat 2 40 0 2245 116 3 0 chr6 36453880 36454176 -152825378 - AluSx SINE Alu -12 300 1 876 165 0 0 chr6 36454392 36454525 -152825029 - FLAM_C SINE Alu 0 133 1 1531 173 4 8 chr6 36454793 36455048 -152824506 - AluJo SINE Alu -16 296 43 271 274 21 21 chr6 36455059 36455154 -152824400 - L2 LINE L2 -285 2987 2893 226 297 65 65 chr6 36455236 36455374 -152824180 - L2 LINE L2 -547 2767 2630 2312 105 0 0 chr6 36455535 36455831 -152823723 + AluSp SINE Alu 1 296 -17 2125 89 43 0 chr6 36456248 36456530 -152823024 + AluSq SINE Alu 1 294 -19 2361 84 16 13 chr6 36456534 36456844 -152822710 - AluSq SINE Alu -2 311 1 2237 101 0 10 chr6 36456880 36457044 -152822510 - AluSc SINE Alu -14 295 134 2437 74 0 0 chr6 36457044 36457340 -152822214 - AluY SINE Alu -14 297 2 2237 101 0 10 chr6 36457340 36457473 -152822081 - AluSc SINE Alu -175 134 1 476 144 50 178 chr6 36457898 36457999 -152821555 + MER5A DNA MER1_type 31 143 -46 2285 123 0 19 chr6 36457999 36458317 -152821237 - AluSx SINE Alu 0 312 1 476 144 50 178 chr6 36458317 36458329 -152821225 + MER5A DNA MER1_type 143 155 -34 2504 84 6 0 chr6 36458329 36458640 -152820914 - AluSp SINE Alu 0 313 1 476 144 50 178 chr6 36458640 36458705 -152820849 + MER5A DNA MER1_type 155 187 -2 2101 96 53 0 chr6 36458790 36459071 -152820483 - AluSq SINE Alu -17 296 1 904 201 12 117 chr6 36459141 36459390 -152820164 - AluJo SINE Alu -89 223 1 1889 132 46 0 chr6 36459425 36459705 -152819849 - AluSx SINE Alu -19 293 1 1884 154 17 3 chr6 36459705 36459996 -152819558 - AluJo SINE Alu -7 305 10 196 233 82 55 chr6 36460007 36460080 -152819474 - MIR SINE MIR -160 102 28 2159 108 0 7 chr6 36460421 36460709 -152818845 + AluSg SINE Alu 1 286 -24 180 0 0 0 chr6 36462814 36462834 -152816720 + (GGA)n Simple_repeat Simple_repeat 1 20 0 2622 63 0 0 chr6 36465906 36466206 -152813348 + AluY SINE Alu 1 300 -11 830 93 0 0 chr6 36467469 36467587 -152811967 + L1PB1 LINE L1 6017 6134 -17 2041 156 0 10 chr6 36468311 36468619 -152810935 - AluJb SINE Alu -7 305 1 2363 100 0 0 chr6 36468629 36468929 -152810625 - AluY SINE Alu -11 300 1 1815 154 25 44 chr6 36471355 36471673 -152807881 + AluJb SINE Alu 1 312 0 21 0 0 0 chr6 36474387 36474408 -152805146 + AT_rich Low_complexity Low_complexity 1 21 0 218 171 0 0 chr6 36475020 36475055 -152804499 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr6 36475557 36475578 -152803976 + AT_rich Low_complexity Low_complexity 1 21 0 338 91 45 76 chr6 36478580 36478646 -152800908 - U6 snRNA snRNA -43 64 1 2420 94 0 0 chr6 36479245 36479543 -152800011 - AluSc SINE Alu -11 298 1 2635 68 0 0 chr6 36480363 36480673 -152798881 + AluY SINE Alu 1 310 -1 2316 106 0 0 chr6 36480903 36481195 -152798359 - AluSg SINE Alu -18 292 1 2317 99 13 0 chr6 36481447 36481749 -152797805 + AluSq SINE Alu 1 306 -7 192 368 19 19 chr6 36481810 36481916 -152797638 + L3 LINE CR1 1450 1555 -22 2250 113 0 10 chr6 36481989 36482289 -152797265 + AluSx SINE Alu 1 297 -15 2316 104 0 7 chr6 36482610 36482917 -152796637 + AluSg1 SINE Alu 3 307 -2 1669 133 118 11 chr6 36483413 36483692 -152795862 + AluSg1 SINE Alu 1 309 0 792 234 0 0 chr6 36483912 36484066 -152795488 + MER58B DNA MER1_type 188 341 0 2131 114 52 0 chr6 36484097 36484386 -152795168 - AluSp SINE Alu -8 305 2 1989 125 0 28 chr6 36484434 36484722 -152794832 - AluSx SINE Alu -32 280 1 528 305 0 61 chr6 36485539 36485736 -152793818 - MER91A DNA MER1_type -11 185 1 2019 137 17 3 chr6 36486145 36486438 -152793116 + AluJb SINE Alu 1 297 -15 2211 131 0 0 chr6 36488932 36489229 -152790325 - AluSg SINE Alu -13 297 1 1925 153 10 0 chr6 36489229 36489523 -152790031 - AluJo SINE Alu -12 300 3 2102 143 0 3 chr6 36489565 36489866 -152789688 - AluSx SINE Alu -6 306 7 2497 59 7 0 chr6 36489883 36490171 -152789383 - AluY SINE Alu -21 290 1 2101 221 129 77 chr6 36490373 36490447 -152789107 - L2 LINE L2 -3 3310 3241 1532 131 0 18 chr6 36490447 36490676 -152788878 + AluJb SINE Alu 86 310 -2 2285 112 0 3 chr6 36490686 36490982 -152788572 + AluSx SINE Alu 6 300 -12 2152 138 0 3 chr6 36490983 36491295 -152788259 + AluSx SINE Alu 1 311 -1 2101 221 129 77 chr6 36491295 36491530 -152788024 - L2 LINE L2 -80 3233 3012 2369 48 41 14 chr6 36491530 36491821 -152787733 + AluY SINE Alu 1 299 -12 2134 139 7 0 chr6 36491825 36492127 -152787427 + AluJb SINE Alu 1 304 -8 2101 221 129 77 chr6 36492127 36492355 -152787199 - L2 LINE L2 -303 3010 2795 1496 118 164 11 chr6 36492355 36492617 -152786937 + AluSx SINE Alu 1 302 0 2187 120 10 0 chr6 36492622 36492914 -152786640 + AluSg SINE Alu 2 296 -14 2101 221 129 77 chr6 36492914 36492984 -152786570 - L2 LINE L2 -521 2792 2727 2048 116 20 30 chr6 36492984 36493285 -152786269 + AluSx SINE Alu 1 298 -14 2101 221 129 77 chr6 36493285 36493744 -152785810 - L2 LINE L2 -586 2727 2156 313 347 0 0 chr6 36494073 36494194 -152785360 + GA-rich Low_complexity Low_complexity 2 122 0 2255 102 0 3 chr6 36494584 36494878 -152784676 - AluSc SINE Alu -16 293 1 209 80 0 160 chr6 36494984 36495034 -152784520 + (A)n Simple_repeat Simple_repeat 1 42 0 2483 76 0 0 chr6 36495036 36495338 -152784216 + AluY SINE Alu 3 304 -7 1621 253 98 12 chr6 36495566 36495644 -152783910 - L2 LINE L2 -1193 2121 2051 2273 98 34 0 chr6 36495644 36495941 -152783613 + AluSx SINE Alu 1 307 -5 1621 253 98 12 chr6 36495941 36496436 -152783118 - L2 LINE L2 -1263 2051 1499 246 319 101 32 chr6 36496484 36496630 -152782924 - L2 LINE L2 -201 3071 2908 2512 77 0 6 chr6 36496630 36496943 -152782611 + AluY SINE Alu 1 311 0 246 319 101 32 chr6 36496943 36496984 -152782570 - L2 LINE L2 -364 2908 2871 2077 130 37 0 chr6 36497129 36497428 -152782126 - AluSx SINE Alu -2 310 1 389 280 223 0 chr6 36497498 36497673 -152781881 - MIR SINE MIR 0 262 49 852 114 0 0 chr6 36497695 36497809 -152781745 - AluJb SINE Alu -9 303 190 1565 123 0 0 chr6 36497811 36498023 -152781531 + AluSg/x SINE Alu 82 293 -17 2315 91 0 0 chr6 36498023 36498308 -152781246 + AluSc SINE Alu 1 285 -24 1559 92 0 0 chr6 36498309 36498504 -152781050 - AluY SINE Alu -116 195 1 582 87 11 43 chr6 36498504 36498596 -152780958 - AluJo SINE Alu -166 146 58 1946 115 86 0 chr6 36498628 36498897 -152780657 - AluSx SINE Alu -20 292 1 621 85 11 0 chr6 36498903 36498997 -152780557 - AluY SINE Alu -14 297 203 202 299 38 18 chr6 36499024 36499138 -152780416 + MIR SINE MIR 15 131 -77 2158 128 7 3 chr6 36499301 36499605 -152779949 - AluSx SINE Alu -5 307 3 771 200 70 0 chr6 36499607 36499792 -152779762 - L1M4 LINE L1 -748 5398 5201 2648 61 0 3 chr6 36499792 36500104 -152779450 - AluY SINE Alu 0 311 1 1589 113 18 51 chr6 36500104 36500179 -152779375 + Tigger3(Golem) DNA MER2_type 2764 2840 -188 1886 145 10 30 chr6 36500179 36500483 -152779071 + AluJb SINE Alu 1 298 -14 1589 113 18 51 chr6 36500483 36500681 -152778873 + Tigger3(Golem) DNA MER2_type 2840 3028 0 330 67 0 0 chr6 36501432 36501477 -152778077 + (CA)n Simple_repeat Simple_repeat 1 45 0 2488 98 0 0 chr6 36502694 36503001 -152776553 + AluSx SINE Alu 1 307 -5 203 333 0 13 chr6 36503763 36503841 -152775713 + CT-rich Low_complexity Low_complexity 3 79 0 2372 95 0 0 chr6 36505553 36505847 -152773707 - AluSc SINE Alu -15 294 1 198 0 0 0 chr6 36507063 36507085 -152772469 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 2377 77 0 10 chr6 36508733 36509033 -152770521 - AluSg SINE Alu -13 297 1 2395 73 7 3 chr6 36509058 36509361 -152770193 + AluSx SINE Alu 1 304 -8 2455 87 0 0 chr6 36509416 36509716 -152769838 + AluSc SINE Alu 1 300 -9 2118 110 27 10 chr6 36510443 36510744 -152768810 + AluSx SINE Alu 1 306 -6 2319 82 4 0 chr6 36510838 36511119 -152768435 + AluSg SINE Alu 1 282 -28 1222 76 0 19 chr6 36511119 36511277 -152768277 + AluSg/x SINE Alu 156 310 -2 1987 112 7 0 chr6 36511839 36512117 -152767437 - AluSx SINE Alu -10 302 23 224 171 73 0 chr6 36512260 36512301 -152767253 + L2 LINE L2 3261 3304 -9 1655 162 30 0 chr6 36512303 36512574 -152766980 + AluSx SINE Alu 1 279 -33 342 0 0 0 chr6 36512574 36512612 -152766942 + (CA)n Simple_repeat Simple_repeat 1 38 0 500 306 106 0 chr6 36512741 36512901 -152766653 - MER5B DNA MER1_type 0 178 2 1181 198 136 29 chr6 36513756 36514029 -152765525 - AluJo SINE Alu 0 302 1 1955 90 24 7 chr6 36514198 36514488 -152765066 + AluSq SINE Alu 2 296 -17 225 225 326 0 chr6 36514501 36514590 -152764964 + L2 LINE L2 3193 3310 -3 1931 105 59 3 chr6 36514645 36514931 -152764623 + AluSg SINE Alu 1 302 -8 1062 253 117 31 chr6 36517773 36518424 -152761130 + L2 LINE L2 2612 3308 -5 1882 137 7 23 chr6 36518483 36518619 -152760935 + AluSx SINE Alu 2 139 -173 2162 100 3 3 chr6 36518619 36518920 -152760634 + AluSx SINE Alu 1 301 -11 1882 137 7 23 chr6 36518920 36519089 -152760465 + AluSx SINE Alu 139 302 -10 2005 133 0 0 chr6 36519251 36519545 -152760009 - AluSx SINE Alu -18 294 1 2171 98 0 20 chr6 36520954 36521259 -152758295 + AluSg SINE Alu 1 299 -11 1377 77 22 0 chr6 36521268 36521450 -152758104 - AluYa5 SINE Alu -20 291 106 2274 52 0 21 chr6 36521450 36521741 -152757813 - AluY SINE Alu -26 285 1 651 273 43 132 chr6 36522298 36522789 -152756765 - L3 LINE CR1 -3 1574 1128 1379 149 47 68 chr6 36523665 36523798 -152755756 + AluJo SINE Alu 1 135 -177 2143 110 7 3 chr6 36523798 36524098 -152755456 + AluSx SINE Alu 1 301 -11 2249 102 0 0 chr6 36524103 36524398 -152755156 + AluSc SINE Alu 1 295 -14 1379 149 47 68 chr6 36524398 36524554 -152755000 + AluJo SINE Alu 139 290 -22 2138 112 23 0 chr6 36524560 36524864 -152754690 + AluSx SINE Alu 1 311 -1 646 325 41 0 chr6 36526333 36526601 -152752953 + Tigger8 DNA MER2_type 178 456 -210 234 365 52 9 chr6 36526665 36526780 -152752774 + Tigger8 DNA MER2_type 547 666 0 2166 107 0 0 chr6 36526888 36527177 -152752377 + AluSq SINE Alu 5 293 -20 244 223 98 0 chr6 36527351 36527463 -152752091 + L1MC4 LINE L1 6976 7098 -944 * 505 296 103 97 chr6 36527459 36527659 -152751895 + L1MC4 LINE L1 6960 7157 -885 2334 70 7 0 chr6 36527659 36527957 -152751597 + AluY SINE Alu 1 300 -11 505 296 103 97 chr6 36527957 36528725 -152750829 + L1MC4 LINE L1 7157 8031 -11 2051 131 0 0 chr6 36528726 36529016 -152750538 + AluSx SINE Alu 1 290 -22 2139 107 3 19 chr6 36529179 36529497 -152750057 + AluSp SINE Alu 1 313 0 2016 118 6 25 chr6 36529499 36529814 -152749740 + AluSc SINE Alu 1 309 0 1792 110 121 4 chr6 36529833 36530097 -152749457 + AluSg SINE Alu 1 295 -5 1878 87 4 0 chr6 36531750 36531992 -152747562 - AluSg SINE Alu -65 245 3 1320 155 5 5 chr6 36532119 36532332 -152747222 - AluJb SINE Alu -99 213 1 1543 161 9 47 chr6 36532378 36532700 -152746854 + AluJb SINE Alu 1 310 -2 181 161 179 36 chr6 36532727 36532783 -152746771 + MER5A DNA MER1_type 126 189 0 316 235 66 102 chr6 36533529 36533695 -152745859 - L2 LINE L2 -3 3310 3151 2163 105 0 0 chr6 36533785 36534081 -152745473 + AluSx SINE Alu 1 296 -16 1516 138 51 55 chr6 36534288 36534477 -152745077 + AluJb SINE Alu 1 190 -122 2205 95 0 29 chr6 36534477 36534783 -152744771 - AluSg SINE Alu -13 297 1 1516 138 51 55 chr6 36534783 36534904 -152744650 + AluJb SINE Alu 190 310 -2 1986 120 3 29 chr6 36535049 36535358 -152744196 - AluSx SINE Alu -11 301 1 2398 71 0 0 chr6 36535873 36536169 -152743385 - AluY SINE Alu -15 296 1 303 245 179 0 chr6 36536445 36536551 -152743003 - L2 LINE L2 -2 3311 3187 1771 148 0 0 chr6 36537933 36538224 -152741330 + AluSx SINE Alu 20 310 0 377 288 57 57 chr6 36538225 36538258 -152741296 - MIR SINE MIR -71 191 159 2113 126 0 0 chr6 36538258 36538560 -152740994 - AluSx SINE Alu -10 302 1 1530 153 3 63 chr6 36538562 36538726 -152740828 - AluJo SINE Alu -18 294 155 2447 50 0 10 chr6 36538726 36539026 -152740528 - AluY SINE Alu -14 297 1 1530 153 3 63 chr6 36539026 36539162 -152740392 - AluJo SINE Alu -157 155 12 377 288 57 57 chr6 36539162 36539302 -152740252 - MIR SINE MIR -103 159 15 280 303 0 11 chr6 36539355 36539444 -152740110 + MIR3 SINE MIR 103 190 -18 907 131 15 0 chr6 36540896 36541026 -152738528 + FLAM_C SINE Alu 2 133 0 346 225 193 62 chr6 36541082 36541152 -152738402 + L2 LINE L2 2719 2778 -535 2222 80 3 10 chr6 36541152 36541452 -152738102 + AluSc SINE Alu 1 298 -11 346 225 193 62 chr6 36541452 36541813 -152737741 + L2 LINE L2 2778 3187 -126 2209 98 13 0 chr6 36541829 36542136 -152737418 + AluSx SINE Alu 1 311 -1 225 237 0 0 chr6 36545035 36545094 -152734460 + G-rich Low_complexity Low_complexity 2 60 0 201 121 0 0 chr6 36546058 36546091 -152733463 + (CTG)n Simple_repeat Simple_repeat 3 35 0 244 220 9 28 chr6 36547509 36547618 -152731936 + GA-rich Low_complexity Low_complexity 3 109 0 21 0 0 0 chr6 36547628 36547649 -152731905 + GC_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 36551376 36551403 -152728151 + GC_rich Low_complexity Low_complexity 1 27 0 277 206 41 14 chr6 36551923 36551996 -152727558 - MIR3 SINE MIR -28 180 106 2344 43 40 7 chr6 36552256 36552556 -152726998 + AluY SINE Alu 2 311 0 475 298 39 17 chr6 36552589 36552770 -152726784 + LTR33 LTR ERVL 329 513 -8 227 151 0 11 chr6 36552833 36553080 -152726474 + AluSx SINE Alu 1 301 -1 2158 98 3 0 chr6 36553228 36553523 -152726031 + AluSx SINE Alu 1 296 -16 2265 93 0 0 chr6 36553525 36553827 -152725727 + AluSg SINE Alu 1 302 -8 2332 87 6 0 chr6 36553829 36554140 -152725414 + AluSp SINE Alu 1 313 0 1447 155 65 0 chr6 36554431 36554676 -152724878 - AluJo SINE Alu -18 294 34 2192 87 0 14 chr6 36554697 36555014 -152724540 - AluSq SINE Alu 0 313 1 2286 162 15 96 chr6 36555019 36555110 -152724444 - L1MB5 LINE L1 -37 6137 6040 2020 113 10 0 chr6 36555110 36555401 -152724153 - AluSq SINE Alu -19 294 1 2286 162 15 96 chr6 36555401 36555818 -152723736 - L1MB5 LINE L1 -134 6040 5591 1726 157 54 27 chr6 36555818 36555972 -152723582 - AluJb SINE Alu 0 302 154 1989 114 3 29 chr6 36555972 36556137 -152723417 - AluSx SINE Alu -14 298 130 2094 104 0 0 chr6 36556137 36556443 -152723111 - AluSc SINE Alu 0 309 3 1920 92 57 7 chr6 36556447 36556730 -152722824 - AluSp SINE Alu -16 297 1 1989 114 3 29 chr6 36556730 36556865 -152722689 - AluSx SINE Alu -185 127 1 1726 157 54 27 chr6 36556865 36557004 -152722550 - AluJb SINE Alu -148 154 1 2286 162 15 96 chr6 36557004 36557087 -152722467 - L1MB5 LINE L1 -582 5592 5593 2038 121 0 16 chr6 36557877 36558190 -152721364 - AluSx SINE Alu -4 308 1 2274 89 0 3 chr6 36558246 36558549 -152721005 - AluSc SINE Alu -7 302 1 2167 110 0 0 chr6 36558549 36558841 -152720713 - AluSx SINE Alu -20 292 1 1615 162 21 0 chr6 36558841 36559125 -152720429 - AluJb SINE Alu -18 294 5 712 157 14 0 chr6 36559130 36559258 -152720296 - L1MB5 LINE L1 -567 5607 5467 1752 158 10 0 chr6 36559264 36559555 -152719999 + AluJb SINE Alu 1 294 -18 1466 118 0 0 chr6 36559555 36559758 -152719796 + AluSx SINE Alu 1 203 -109 1174 124 4 161 chr6 36559758 36560031 -152719523 + AluSg/x SINE Alu 67 296 -14 198 247 91 39 chr6 36560188 36560265 -152719289 - MIR3 SINE MIR -41 167 87 188 35 35 0 chr6 36560616 36560645 -152718909 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2064 59 37 75 chr6 36561138 36561460 -152718094 + AluY SINE Alu 1 310 -1 2230 83 7 0 chr6 36561477 36561766 -152717788 + AluSc SINE Alu 1 291 -18 706 295 63 35 chr6 36561766 36562258 -152717296 + L1MC5 LINE L1 7289 7794 -167 2471 62 19 10 chr6 36562326 36562634 -152716920 + AluY SINE Alu 1 311 0 2307 84 7 19 chr6 36566543 36566676 -152712878 + AluSg SINE Alu 3 136 -174 2591 52 3 3 chr6 36566676 36566982 -152712572 + AluY SINE Alu 1 306 -5 2307 84 7 19 chr6 36566982 36567156 -152712398 + AluSg SINE Alu 136 306 -4 1102 137 30 12 chr6 36567156 36567324 -152712230 + AluSg/x SINE Alu 132 302 -8 323 164 0 15 chr6 36568696 36568763 -152710791 + GA-rich Low_complexity Low_complexity 5 70 0 1772 166 19 35 chr6 36568910 36569224 -152710330 + AluJb SINE Alu 4 312 0 264 139 93 0 chr6 36569268 36569343 -152710211 + Alu SINE Alu 235 313 0 1507 153 84 8 chr6 36569391 36569652 -152709902 - AluJo SINE Alu -31 281 1 435 51 0 0 chr6 36569653 36569712 -152709842 - L1MA7 LINE L1 -461 5830 5772 2928 132 27 0 chr6 36569712 36570229 -152709325 - L1MA4 LINE L1 -1 6299 5769 988 198 18 0 chr6 36570229 36570396 -152709158 - AluSg/x SINE Alu -24 286 117 2246 129 0 0 chr6 36570421 36570724 -152708830 - AluSx SINE Alu -9 303 1 2308 118 3 0 chr6 36570728 36571032 -152708522 - AluSp SINE Alu -8 305 1 548 105 29 0 chr6 36571037 36571146 -152708408 - L1ME LINE L1 -381 5781 5669 589 237 8 0 chr6 36571182 36571313 -152708241 - AluJo SINE Alu -103 209 78 309 250 16 0 chr6 36571313 36571377 -152708177 + MER2 DNA MER2_type 281 345 0 1753 140 23 8 chr6 36571428 36571692 -152707862 + AluSx SINE Alu 1 268 -44 217 352 56 24 chr6 36573742 36573867 -152705687 + L2 LINE L2 3144 3272 0 736 142 8 0 chr6 36574701 36574828 -152704726 - L1MB3 LINE L1 -1 6182 6055 1855 179 3 16 chr6 36574839 36575151 -152704403 - AluJo SINE Alu -4 308 1 2036 136 0 7 chr6 36675682 36675976 -152603578 - AluSx SINE Alu -16 296 5 560 233 31 25 chr6 36676063 36676222 -152603332 - MIR SINE MIR 0 262 103 225 305 183 0 chr6 36676288 36676452 -152603102 + L2 LINE L2 2719 2912 -402 2210 89 41 0 chr6 36676561 36676853 -152602701 - AluSx SINE Alu -8 304 1 193 337 67 11 chr6 36677066 36677155 -152602399 - L2 LINE L2 -17 3296 3203 2467 81 0 31 chr6 36678330 36678653 -152600901 - AluSp SINE Alu 0 313 1 2433 68 3 0 chr6 36678660 36678953 -152600601 - AluSp SINE Alu -19 294 1 242 314 23 12 chr6 36679065 36679151 -152600403 - MIR SINE MIR -66 142 56 1073 62 8 0 chr6 36679305 36679435 -152600119 + AluY SINE Alu 2 132 -179 189 323 115 15 chr6 36679523 36679653 -152599901 + L2 LINE L2 3171 3313 0 33 43 0 0 chr6 36681750 36681797 -152597757 + GC_rich Low_complexity Low_complexity 1 47 0 1319 145 7 86 chr6 36682227 36682496 -152597058 + AluJo SINE Alu 40 287 -25 2465 78 3 0 chr6 36682504 36682812 -152596742 + AluSc SINE Alu 1 309 0 376 198 0 55 chr6 36684830 36684921 -152594633 + L2 LINE L2 3225 3310 -3 917 142 231 4 chr6 36685878 36686103 -152593451 - MER2 DNA MER2_type -36 309 34 409 207 49 0 chr6 36686194 36686276 -152593278 - FAM SINE Alu -78 97 12 279 216 68 45 chr6 36686391 36686479 -152593075 + MER5A DNA MER1_type 18 107 -82 1218 136 39 152 chr6 36686597 36686893 -152592661 + AluJb SINE Alu 3 260 -52 2121 121 13 10 chr6 36686893 36687198 -152592356 - AluSx SINE Alu -6 306 1 1218 136 39 152 chr6 36687198 36687231 -152592323 + AluJb SINE Alu 260 295 -17 952 209 0 0 chr6 36687569 36687727 -152591827 - FRAM SINE Alu -16 160 3 2161 125 7 13 chr6 36687740 36688044 -152591510 - AluSx SINE Alu -10 302 1 2282 125 3 0 chr6 36688805 36689109 -152590445 - AluSx SINE Alu -7 305 1 2371 88 10 0 chr6 36689119 36689416 -152590138 - AluY SINE Alu -9 302 3 2294 110 0 13 chr6 36689418 36689719 -152589835 - AluSx SINE Alu -15 297 1 720 252 67 21 chr6 36689729 36689967 -152589587 - MIR SINE MIR -10 252 4 214 317 48 0 chr6 36690166 36690270 -152589284 + MIR SINE MIR 151 259 -3 2339 99 3 3 chr6 36691543 36691847 -152587707 + AluSx SINE Alu 1 304 -8 2145 124 13 10 chr6 36692311 36692609 -152586945 - AluSx SINE Alu -13 299 1 1827 161 24 3 chr6 36692700 36692992 -152586562 - AluJb SINE Alu -14 298 1 1027 279 73 31 chr6 36693222 36693373 -152586181 - HAL1 LINE L1 -716 1791 1648 2177 142 0 0 chr6 36693373 36693676 -152585878 - AluSq SINE Alu -10 303 1 1027 279 73 31 chr6 36693676 36693799 -152585755 - HAL1 LINE L1 -859 1648 1532 2287 121 3 0 chr6 36693799 36694105 -152585449 + AluSq SINE Alu 1 307 -6 1910 171 23 3 chr6 36694109 36694413 -152585141 + AluJb SINE Alu 1 310 -2 1027 279 73 31 chr6 36694413 36694583 -152584971 - HAL1 LINE L1 -977 1530 1322 2296 98 3 0 chr6 36694650 36694947 -152584607 - AluY SINE Alu -13 298 1 1477 99 42 0 chr6 36695088 36695280 -152584274 - AluSg/x SINE Alu -40 272 73 1012 286 165 43 chr6 36695286 36695513 -152584041 - HAL1 LINE L1 -1669 838 640 180 0 0 0 chr6 36695513 36695533 -152584021 + (TTGGGG)n Simple_repeat Simple_repeat 3 22 0 1012 286 165 43 chr6 36695533 36695673 -152583881 - HAL1 LINE L1 -1867 640 518 1819 137 3 81 chr6 36695673 36696008 -152583546 + AluSx SINE Alu 4 312 0 1012 286 165 43 chr6 36696008 36696289 -152583265 - HAL1 LINE L1 -1989 518 110 1942 182 0 3 chr6 36696309 36696622 -152582932 + AluJb SINE Alu 1 312 0 768 73 18 0 chr6 36696645 36696755 -152582799 - HY1 scRNA scRNA 0 112 1 518 16 0 0 chr6 36696784 36696848 -152582706 + AluY SINE Alu 230 293 -16 297 250 0 0 chr6 36696858 36696918 -152582636 - HAL1 LINE L1 -2438 69 10 2592 64 0 0 chr6 36696936 36697233 -152582321 - AluY SINE Alu -14 297 1 362 290 184 37 chr6 36697236 36697508 -152582046 + L2 LINE L2 2652 2963 -351 201 39 0 0 chr6 36697522 36697548 -152582006 + (ACTG)n Simple_repeat Simple_repeat 1 26 0 495 87 0 0 chr6 36697549 36697618 -152581936 + (TCCG)n Simple_repeat Simple_repeat 2 70 0 1891 127 33 11 chr6 36697631 36697906 -152581648 - AluSx SINE Alu -31 281 1 712 330 47 20 chr6 36697939 36698281 -152581273 + L2 LINE L2 2959 3309 -4 205 368 21 0 chr6 36698344 36698439 -152581115 - MIR3 SINE MIR -41 167 71 398 228 154 86 chr6 36698465 36698627 -152580927 - MER5A DNA MER1_type -8 181 9 2886 188 64 14 chr6 36698786 36699407 -152580147 + MER82 DNA MER2_type 1 652 -1 607 301 68 0 chr6 36699504 36699667 -152579887 - MER91A DNA MER1_type 0 196 23 2404 112 0 0 chr6 36699711 36700016 -152579538 - AluSg SINE Alu -5 305 1 1792 160 17 0 chr6 36700016 36700310 -152579244 - AluJb SINE Alu -13 299 1 198 0 0 0 chr6 36701183 36701205 -152578349 + (T)n Simple_repeat Simple_repeat 1 22 0 1806 109 0 0 chr6 36701205 36701435 -152578119 - AluSq SINE Alu -83 230 1 599 183 1 7 chr6 36705173 36705187 -152574367 - L1PA16 LINE L1 -134 6022 6009 1918 85 0 12 chr6 36705187 36705435 -152574119 - AluSc SINE Alu -10 299 55 599 183 1 7 chr6 36705435 36705545 -152574009 - L1PA16 LINE L1 -147 6009 5903 445 81 0 0 chr6 36705545 36705607 -152573947 - AluSc SINE Alu -250 63 2 2217 132 3 0 chr6 36705811 36706166 -152573388 + L1PA16 LINE L1 5799 6154 -12 608 160 104 0 chr6 36706214 36706320 -152573234 + FLAM_C SINE Alu 5 121 -22 186 43 0 0 chr6 36706320 36706343 -152573211 + (CAA)n Simple_repeat Simple_repeat 2 24 0 262 68 23 0 chr6 36706343 36706387 -152573167 + L1M1 LINE L1 5788 5832 -468 1682 139 73 7 chr6 36706727 36706890 -152572664 - AluJb SINE Alu -14 298 108 423 0 0 0 chr6 36706890 36706937 -152572617 + (TA)n Simple_repeat Simple_repeat 2 48 0 1682 139 73 7 chr6 36706937 36707047 -152572507 - AluJb SINE Alu -204 108 7 233 196 0 0 chr6 36707240 36707286 -152572268 + CT-rich Low_complexity Low_complexity 2 47 0 2436 112 0 0 chr6 36707342 36707654 -152571900 + AluSx SINE Alu 1 312 0 246 355 86 43 chr6 36707698 36707954 -152571600 - L2 LINE L2 -179 3093 2827 207 321 25 37 chr6 36708403 36708484 -152571070 + L2 LINE L2 3186 3265 -7 444 258 62 67 chr6 36709715 36709924 -152569630 + L2 LINE L2 3098 3305 -8 368 287 156 0 chr6 36710471 36710638 -152568916 + MIR SINE MIR 49 241 -21 1948 136 0 4 chr6 36710904 36711207 -152568347 - AluJo SINE Alu 0 316 15 21 0 0 0 chr6 36711220 36711241 -152568313 + AT_rich Low_complexity Low_complexity 1 21 0 2398 88 0 3 chr6 36711245 36711539 -152568015 + AluSg SINE Alu 1 293 -17 1956 81 58 8 chr6 36711539 36711799 -152567755 - AluSx SINE Alu -37 275 2 206 206 0 0 chr6 36712089 36712123 -152567431 + (CAGCC)n Simple_repeat Simple_repeat 1 34 0 369 256 22 0 chr6 36712242 36712332 -152567222 + L2 LINE L2 3182 3273 -40 205 324 15 0 chr6 36712570 36712638 -152566916 + MIR3 SINE MIR 132 200 -8 2435 75 10 0 chr6 36714047 36714341 -152565213 + AluSq SINE Alu 1 297 -16 302 252 25 50 chr6 36714457 36714478 -152565076 - L1MA10 LINE L1 0 6334 6314 2362 209 44 26 chr6 36714478 36714723 -152564831 - L1ME1 LINE L1 -8 6158 5919 2349 96 27 0 chr6 36714723 36715024 -152564530 + AluSq SINE Alu 1 309 -4 2362 209 44 26 chr6 36715024 36715347 -152564207 - L1ME1 LINE L1 -247 5919 5580 238 158 0 0 chr6 36715348 36715386 -152564168 + Alu SINE Alu 2 39 -264 1088 112 7 0 chr6 36715386 36715538 -152564016 - AluSx SINE Alu -159 153 1 1364 171 12 4 chr6 36715541 36715786 -152563768 + AluJb SINE Alu 50 296 -16 2135 90 30 7 chr6 36715790 36716089 -152563465 + AluSg SINE Alu 1 306 -4 2102 75 3 14 chr6 36716495 36716810 -152562744 - AluY SINE Alu 0 313 2 483 314 63 37 chr6 36716812 36717003 -152562551 - MIR SINE MIR -38 224 29 200 268 0 0 chr6 36717023 36717064 -152562490 + MIR SINE MIR 21 61 -201 2119 126 0 0 chr6 36717067 36717377 -152562177 - AluSg SINE Alu 0 310 1 1468 193 0 39 chr6 36717377 36717681 -152561873 - AluJo SINE Alu -18 294 3 277 345 146 0 chr6 36717686 36717851 -152561703 - MIR SINE MIR -58 204 16 183 80 0 0 chr6 36718368 36718393 -152561161 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 971 199 24 15 chr6 36718419 36718450 -152561104 - MER3 DNA MER1_type 0 209 180 2104 115 0 7 chr6 36718450 36718619 -152560935 - AluSx SINE Alu -10 302 134 2252 74 0 7 chr6 36718619 36718936 -152560618 - AluY SINE Alu 0 311 2 2104 115 0 7 chr6 36718936 36719070 -152560484 - AluSx SINE Alu -178 134 1 971 199 24 15 chr6 36719070 36719244 -152560310 - MER3 DNA MER1_type -29 180 2 451 144 0 56 chr6 36720165 36720255 -152559299 - AluJ/FRAM SINE Alu -8 304 220 229 97 0 0 chr6 36720344 36720375 -152559179 - Alu SINE Alu -52 250 220 229 97 0 0 chr6 36720416 36720447 -152559107 - Alu SINE Alu -52 250 220 1313 175 20 4 chr6 36720512 36720758 -152558796 - AluJo SINE Alu -62 250 1 2283 79 7 0 chr6 36721188 36721492 -152558062 - AluSp SINE Alu -7 306 1 315 276 31 24 chr6 36721550 36721677 -152557877 - LTR67 LTR ERVL -17 540 413 294 299 41 10 chr6 36722123 36722220 -152557334 + MIR SINE MIR 156 255 -7 501 251 37 55 chr6 36722245 36722352 -152557202 - MER63A DNA MER1_type -1478 210 103 2736 157 130 73 chr6 36722352 36722452 -152557102 - MER39 LTR ERV1 0 707 614 1581 189 33 0 chr6 36722452 36722753 -152556801 - AluJb SINE Alu -1 311 1 2736 157 130 73 chr6 36722753 36722870 -152556684 - MER39 LTR ERV1 -93 614 505 2209 116 0 0 chr6 36722870 36723173 -152556381 + AluSx SINE Alu 1 303 -9 2736 157 130 73 chr6 36723173 36723205 -152556349 - MER39 LTR ERV1 -202 505 476 2400 77 3 0 chr6 36723205 36723515 -152556039 + AluSp SINE Alu 1 311 -2 2736 157 130 73 chr6 36723515 36723932 -152555622 - MER39 LTR ERV1 -231 476 1 501 251 37 55 chr6 36723932 36723987 -152555567 - MER63A DNA MER1_type -1585 103 51 729 301 152 24 chr6 36724086 36724468 -152555086 - MLT1J LTR MaLR -6 505 75 231 319 66 56 chr6 36724632 36724886 -152554668 - L2 LINE L2 -470 2844 2585 8610 64 5 7 chr6 36724886 36725960 -152553594 - MER11C LTR ERVK 0 1071 1 231 319 66 56 chr6 36725960 36725993 -152553561 - L2 LINE L2 -729 2585 2554 2122 123 0 0 chr6 36726123 36726431 -152553123 - AluSq SINE Alu -5 308 1 1531 159 0 58 chr6 36726445 36726753 -152552801 - AluJo SINE Alu -21 291 2 1146 226 117 40 chr6 36726759 36727161 -152552393 - LTR16A1 LTR ERVL 0 457 25 204 316 19 52 chr6 36727182 36727337 -152552217 - L2 LINE L2 -954 2360 2211 1529 175 4 18 chr6 36727343 36727677 -152551877 - AluJb SINE Alu 0 336 7 1011 236 232 42 chr6 36727909 36728221 -152551333 - MLT1G1 LTR MaLR 0 595 344 1651 149 23 46 chr6 36728221 36728523 -152551031 - AluJb SINE Alu -17 295 1 1011 236 232 42 chr6 36728523 36728710 -152550844 - MLT1G1 LTR MaLR -251 344 1 211 191 71 0 chr6 36728948 36728990 -152550564 - MIR SINE MIR -107 155 111 211 328 16 0 chr6 36728958 36729019 -152550535 - MIR SINE MIR -65 143 82 408 236 71 0 chr6 36730257 36730384 -152549170 - L1ME4a LINE L1 -9 6112 5977 238 297 121 66 chr6 36730396 36730743 -152548811 + L2 LINE L2 2909 3274 -39 374 303 76 0 chr6 36730819 36730938 -152548616 - L2 LINE L2 -8 3264 3137 572 284 60 22 chr6 36731070 36731253 -152548301 - MIR3 SINE MIR -3 205 16 443 314 62 47 chr6 36731255 36731583 -152547971 + L2 LINE L2 2449 2771 -543 1493 155 54 101 chr6 36731583 36731731 -152547823 - MLT1B LTR MaLR 0 390 237 1703 106 94 4 chr6 36731731 36732035 -152547519 - AluSc SINE Alu 0 309 1 2222 99 3 13 chr6 36732037 36732349 -152547205 - AluSx SINE Alu -3 309 1 1493 155 54 101 chr6 36732349 36732603 -152546951 - MLT1B LTR MaLR -154 236 4 443 314 62 47 chr6 36732603 36732675 -152546879 + L2 LINE L2 2771 2855 -459 430 295 75 75 chr6 36732786 36733027 -152546527 + L2 LINE L2 3007 3247 -25 2292 98 0 0 chr6 36733649 36733946 -152545608 + AluSq SINE Alu 1 297 -16 336 164 79 145 chr6 36733946 36734098 -152545456 + L1ME3 LINE L1 5968 6109 -53 23 0 0 0 chr6 36734119 36734142 -152545412 + AT_rich Low_complexity Low_complexity 1 23 0 1795 170 20 0 chr6 36734150 36734456 -152545098 + AluJb SINE Alu 1 312 0 1070 207 22 88 chr6 36734486 36734848 -152544706 + L1ME1 LINE L1 5811 6148 -18 26 0 0 0 chr6 36734848 36734874 -152544680 + AT_rich Low_complexity Low_complexity 1 26 0 568 122 0 0 chr6 36735837 36735919 -152543635 + AluS SINE Alu 5 86 -226 447 138 15 0 chr6 36735920 36735985 -152543569 - AluS SINE Alu -236 66 1 240 135 0 0 chr6 36735985 36736022 -152543532 - L1ME4a LINE L1 -187 5975 5939 2269 60 0 10 chr6 36736242 36736543 -152543011 - AluY SINE Alu -13 298 1 2086 113 3 3 chr6 36736543 36736844 -152542710 - AluSx SINE Alu -11 301 1 377 359 30 0 chr6 36736876 36737007 -152542547 + MIR SINE MIR 20 154 -108 1264 227 65 36 chr6 36737115 36737423 -152542131 + MLT1I LTR MaLR 93 409 0 1708 167 3 7 chr6 36737553 36737846 -152541708 - AluJo SINE Alu -20 292 1 234 325 0 17 chr6 36737914 36738034 -152541520 + A-rich Low_complexity Low_complexity 2 119 0 1971 137 0 0 chr6 36738045 36738388 -152541166 + AluSx SINE Alu 1 343 0 371 289 138 58 chr6 36738604 36739137 -152540417 - L2 LINE L2 -20 3252 2674 544 149 6 119 chr6 36739264 36739321 -152540233 - MER83 LTR ERV1 0 448 386 2244 88 0 16 chr6 36739321 36739626 -152539928 + AluSx SINE Alu 1 300 -12 544 149 6 119 chr6 36739626 36739794 -152539760 - MER83 LTR ERV1 -62 386 114 6990 153 23 16 chr6 36739796 36740916 -152538638 - MER83-int LTR ERV1 -3741 1139 12 1568 175 73 80 chr6 36740916 36741367 -152538187 - MER83 LTR ERV1 0 448 1 360 257 59 103 chr6 36741368 36741466 -152538088 - MIR SINE MIR -19 243 142 2176 103 0 0 chr6 36741466 36741758 -152537796 - AluSc SINE Alu -17 292 1 360 257 59 103 chr6 36741758 36741912 -152537642 - MIR SINE MIR -120 142 2 222 303 98 32 chr6 36741995 36742187 -152537367 - MIR SINE MIR -56 206 1 202 234 16 47 chr6 36743045 36743109 -152536445 - MIR SINE MIR -64 198 137 2298 135 41 117 chr6 36743112 36743352 -152536202 - L1MB3 LINE L1 -7 6176 5920 1562 112 0 0 chr6 36743352 36743575 -152535979 - AluSc SINE Alu -3 306 84 2298 135 41 117 chr6 36743575 36743602 -152535952 - L1MB3 LINE L1 -263 5920 5893 1784 134 51 0 chr6 36743602 36743877 -152535677 + AluSx SINE Alu 1 289 -23 2007 98 39 0 chr6 36743885 36744170 -152535384 + AluSx SINE Alu 1 296 -16 2298 135 41 117 chr6 36744170 36744207 -152535347 - L1MB3 LINE L1 -292 5891 4787 2190 98 0 3 chr6 36744207 36744502 -152535052 - AluSp SINE Alu -16 297 4 510 243 62 82 chr6 36744507 36744622 -152534932 - L1MD3 LINE L1 -2104 5891 5775 1778 160 0 20 chr6 36744622 36744928 -152534626 - AluJb SINE Alu -12 300 1 510 243 62 82 chr6 36744928 36745055 -152534499 - L1MD3 LINE L1 -2220 5775 5654 243 146 0 0 chr6 36745026 36745074 -152534480 - L1MB7 LINE L1 -7 6177 6130 * 528 106 0 75 chr6 36745078 36745172 -152534382 + AluSg/x SINE Alu 210 296 -16 4397 140 70 43 chr6 36745172 36745203 -152534351 - L1MB7 LINE L1 -47 6137 6108 2018 108 10 0 chr6 36745203 36745499 -152534055 - AluSg SINE Alu -10 300 2 4397 140 70 43 chr6 36745499 36746172 -152533382 - L1MB7 LINE L1 -76 6108 5455 2024 94 49 3 chr6 36746172 36746458 -152533096 - AluSx SINE Alu -13 299 1 4397 140 70 43 chr6 36746458 36746679 -152532875 - L1MB7 LINE L1 -729 5455 5242 872 133 0 15 chr6 36746679 36746814 -152532740 - FLAM_C SINE Alu 0 133 1 4397 140 70 43 chr6 36746814 36747089 -152532465 - L1MB7 LINE L1 -942 5242 4912 807 127 0 0 chr6 36747143 36747261 -152532293 + FLAM_C SINE Alu 2 119 -24 195 42 0 0 chr6 36747265 36747289 -152532265 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 305 297 0 50 chr6 36747290 36747391 -152532163 + L2 LINE L2 3176 3271 -1 261 244 47 12 chr6 36747390 36747476 -152532078 - MIR SINE MIR -126 136 48 * 2250 79 17 0 chr6 36747490 36747781 -152531773 - AluSc SINE Alu -13 296 1 2067 88 14 0 chr6 36747884 36748229 -152531325 + AluSx SINE Alu 1 312 0 254 260 328 11 chr6 36748921 36749098 -152530456 - MIR SINE MIR -10 252 20 510 201 85 39 chr6 36749237 36749440 -152530114 - MER63 DNA MER1_type 0 1061 1 2059 108 34 0 chr6 36749442 36749738 -152529816 - AluSx SINE Alu -6 306 1 644 171 70 23 chr6 36750208 36750337 -152529217 - AluJo SINE Alu -93 219 85 1760 164 17 0 chr6 36750470 36750762 -152528792 + AluJb SINE Alu 1 297 -15 478 346 23 68 chr6 36751726 36751857 -152527697 - L2 LINE L2 0 3272 3157 2247 82 0 10 chr6 36751857 36752163 -152527391 - AluSq SINE Alu -10 303 1 478 346 23 68 chr6 36752163 36752297 -152527257 - L2 LINE L2 -115 3157 3019 194 276 103 0 chr6 36752330 36752388 -152527166 + L2 LINE L2 3160 3223 -49 336 314 0 0 chr6 36752609 36752695 -152526859 + MIR SINE MIR 44 129 -133 27 0 0 0 chr6 36752785 36752812 -152526742 + AT_rich Low_complexity Low_complexity 1 27 0 2332 56 0 0 chr6 36752812 36753099 -152526455 - AluY SINE Alu -24 287 1 2211 88 0 0 chr6 36753406 36753715 -152525839 - AluSg SINE Alu 0 309 1 1792 161 0 13 chr6 36753723 36754022 -152525532 - AluJb SINE Alu -17 295 1 2114 84 61 3 chr6 36754522 36754818 -152524736 - AluSq SINE Alu 0 313 1 1071 202 116 27 chr6 36755364 36755622 -152523932 + AluJb SINE Alu 12 292 -20 183 42 0 0 chr6 36755895 36755919 -152523635 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 196 317 24 12 chr6 36756325 36756407 -152523147 + MIR SINE MIR 170 252 -10 2046 125 0 0 chr6 36757027 36757361 -152522193 - AluSx SINE Alu 0 334 1 1510 163 19 0 chr6 36757603 36757861 -152521693 - AluJo SINE Alu -49 263 1 246 121 0 0 chr6 36757907 36757940 -152521614 + Alu SINE Alu 1 33 -269 686 199 6 68 chr6 36757993 36758154 -152521400 - AluJb SINE Alu -144 168 18 993 241 17 61 chr6 36758173 36758580 -152520974 - L1MC5 LINE L1 -436 7525 7137 1376 226 74 61 chr6 36758631 36759157 -152520397 - L1MC5 LINE L1 -812 7149 6617 24 0 0 0 chr6 36759194 36759218 -152520336 + AT_rich Low_complexity Low_complexity 1 24 0 1660 191 84 56 chr6 36759426 36759855 -152519699 - LTR47B LTR ERVL -2 441 1 406 239 138 7 chr6 36760133 36760271 -152519283 - L1MC5 LINE L1 -1925 5883 5728 189 0 0 0 chr6 36760271 36760292 -152519262 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 656 152 62 18 chr6 36760305 36760417 -152519137 - AluJb SINE Alu -194 118 2 1071 263 53 19 chr6 36760418 36760741 -152518813 - L1MC5 LINE L1 -2072 5736 5403 249 57 0 0 chr6 36760742 36760777 -152518777 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1455 112 0 0 chr6 36760779 36760976 -152518578 - AluSg SINE Alu -113 197 1 302 254 117 56 chr6 36760978 36761175 -152518379 - L1MC5 LINE L1 -1005 5141 4933 2078 109 13 0 chr6 36761565 36761868 -152517686 - AluSx SINE Alu -5 307 1 199 281 199 1 chr6 36762108 36762278 -152517276 - MIR SINE MIR -28 234 22 230 281 18 0 chr6 36762496 36762553 -152517001 + L2 LINE L2 3256 3313 0 2001 114 17 3 chr6 36762741 36763040 -152516514 + AluSx SINE Alu 5 307 -5 350 322 0 0 chr6 36763047 36763137 -152516417 - L1MC4 LINE L1 -1339 6703 6614 329 344 0 0 chr6 36763065 36763155 -152516399 + L1MC4 LINE L1 6614 6703 -1339 * 1980 132 0 16 chr6 36763515 36763825 -152515729 + AluSq SINE Alu 1 305 -8 2225 97 0 6 chr6 36763825 36764135 -152515419 + AluSc SINE Alu 1 309 0 2062 108 0 11 chr6 36764152 36764465 -152515089 + AluSx SINE Alu 1 310 0 2787 160 125 39 chr6 36764974 36765544 -152514010 - MER21A LTR ERV1 0 931 313 1459 144 33 52 chr6 36865544 36865904 -152413650 - MER21A LTR ERV1 -240 467 1 2076 121 10 3 chr6 36866006 36866295 -152413259 - AluSx SINE Alu -21 291 1 1567 150 72 49 chr6 36866427 36866560 -152412994 - MER39 LTR ERV1 -16 691 563 2254 131 0 6 chr6 36866560 36866874 -152412680 + AluSx SINE Alu 1 312 0 1567 150 72 49 chr6 36866874 36867086 -152412468 - MER39 LTR ERV1 -144 563 338 1382 153 5 5 chr6 36867086 36867309 -152412245 - pTR5 LTR ERV1 -2046 392 170 285 303 0 0 chr6 36867310 36867409 -152412145 - LTR30 LTR ERV1 -80 642 544 4004 158 46 49 chr6 36867410 36868374 -152411180 - pTR5 LTR ERV1 -414 2024 743 1601 149 76 6 chr6 36868374 36868690 -152410864 - MER39 LTR ERV1 -366 341 4 2022 118 13 23 chr6 36868728 36869033 -152410521 - AluSx SINE Alu -10 302 1 1920 167 0 16 chr6 36869299 36869605 -152409949 + AluJo SINE Alu 3 303 -9 242 95 24 0 chr6 36869616 36869658 -152409896 + Charlie8 DNA MER1_type 87 129 -2288 968 208 56 5 chr6 36869667 36869864 -152409690 + AluJo SINE Alu 86 292 -20 2374 94 0 7 chr6 36870324 36870622 -152408932 + AluSx SINE Alu 1 296 -16 2188 180 59 21 chr6 36871072 36871594 -152407960 + MER74A LTR ERVL 4 545 -13 1862 155 3 33 chr6 36871676 36872002 -152407552 + AluSx SINE Alu 1 312 0 1648 177 0 32 chr6 36872016 36872293 -152407261 + AluJo SINE Alu 6 273 -39 560 229 84 12 chr6 36872330 36872496 -152407058 + L2 LINE L2 3100 3277 -36 254 289 20 86 chr6 36872529 36872726 -152406828 - MLT1J LTR MaLR -215 296 113 2390 78 14 0 chr6 36872883 36873177 -152406377 - AluY SINE Alu -13 298 1 2255 117 0 7 chr6 36873218 36873526 -152406028 - AluSx SINE Alu -4 308 3 227 31 31 0 chr6 36873771 36873803 -152405751 + (TG)n Simple_repeat Simple_repeat 1 33 0 1072 187 10 30 chr6 36873981 36874179 -152405375 - AluJo SINE Alu -118 194 1 1607 131 64 17 chr6 36874179 36874476 -152405078 - MER39 LTR ERV1 -396 311 1 539 255 98 21 chr6 36874959 36875194 -152404360 + MLT1J LTR MaLR 230 482 -29 1899 122 10 56 chr6 36875212 36875515 -152404039 - AluSq SINE Alu -24 289 1 368 104 30 30 chr6 36875515 36875582 -152403972 - AluSc SINE Alu -7 292 226 7157 120 128 96 chr6 36875585 36877229 -152402325 - pTR5 LTR ERV1 0 2438 742 1801 109 0 0 chr6 36877229 36877459 -152402095 - AluSx SINE Alu -82 230 1 216 250 0 0 chr6 36877654 36877709 -152401845 + MIR SINE MIR 102 157 -51 1518 143 0 41 chr6 36877977 36878222 -152401332 - AluJb SINE Alu -21 291 57 2150 120 3 0 chr6 36878470 36878762 -152400792 + AluSx SINE Alu 1 293 -19 2398 73 3 3 chr6 36879427 36879727 -152399827 - AluSc SINE Alu -9 300 1 277 324 189 22 chr6 36880152 36880581 -152398973 - L2 LINE L2 -1004 2310 1789 1166 262 90 31 chr6 36880581 36881005 -152398549 + LTR16A LTR ERVL 2 450 0 277 324 189 22 chr6 36881005 36881063 -152398491 - L2 LINE L2 -1525 1789 1742 414 219 37 0 chr6 36881071 36881153 -152398401 + FRAM/FAM SINE Alu 1 77 -99 2065 127 27 13 chr6 36881262 36881434 -152398120 - AluJb SINE Alu -8 304 125 2331 94 3 3 chr6 36881434 36881733 -152397821 - AluSp SINE Alu -14 299 1 2065 127 27 13 chr6 36881733 36881860 -152397694 - AluJb SINE Alu -187 125 1 333 414 30 20 chr6 36881861 36882059 -152397495 - L3 LINE CR1 -1351 226 27 224 264 299 0 chr6 36883155 36883242 -152396312 - L2 LINE L2 0 3272 3160 2426 98 0 0 chr6 36883413 36883719 -152395835 + AluSg SINE Alu 1 306 -4 456 123 0 0 chr6 36883751 36883824 -152395730 + (TTC)n Simple_repeat Simple_repeat 3 75 0 365 167 0 0 chr6 36883826 36883892 -152395662 - Alu SINE Alu -1 300 235 1902 172 3 3 chr6 36884174 36884476 -152395078 + AluJo SINE Alu 5 306 -6 259 208 0 0 chr6 36884549 36884597 -152394957 + MER57A LTR ERV1 292 339 -64 1337 111 0 0 chr6 36884604 36884785 -152394769 + AluSg/x SINE Alu 119 299 -11 216 245 0 75 chr6 36884968 36885021 -152394533 - MIR3 SINE MIR -49 159 111 288 258 32 11 chr6 36885101 36885194 -152394360 + MER5B DNA MER1_type 18 112 -66 2243 70 39 3 chr6 36885561 36885845 -152393709 - AluSx SINE Alu -18 294 1 527 273 105 6 chr6 36886173 36886345 -152393209 - MIR SINE MIR -1 261 73 2189 110 0 38 chr6 36886420 36886737 -152392817 + AluSx SINE Alu 1 305 -7 672 171 39 23 chr6 36886874 36887003 -152392551 - FLAM_A SINE Alu -2 131 1 343 194 45 0 chr6 36889978 36890045 -152389509 - MER50 LTR ERV1 -6 728 659 1217 127 42 14 chr6 36890055 36890267 -152389287 - MER50 LTR ERV1 -516 218 1 1075 170 0 0 chr6 36891416 36891581 -152387973 + FRAM SINE Alu 1 165 -1 1519 251 53 2 chr6 36892118 36892536 -152387018 + L1ME3A LINE L1 5724 6162 -8 1777 96 114 36 chr6 36892558 36892838 -152386716 + AluSx SINE Alu 1 302 -10 1380 201 138 39 chr6 36892991 36893433 -152386121 + MLT2B1 LTR ERVL 5 490 -30 201 65 22 43 chr6 36893446 36893492 -152386062 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 2172 146 0 0 chr6 36893496 36893805 -152385749 - AluJo SINE Alu -3 309 1 1035 214 124 105 chr6 36894107 36894324 -152385230 + MLT1H1 LTR MaLR 5 217 -338 2412 95 0 3 chr6 36894324 36894628 -152384926 + AluSg SINE Alu 1 303 -7 1035 214 124 105 chr6 36894628 36894640 -152384914 + MLT1H1 LTR MaLR 217 227 -328 1609 167 37 0 chr6 36894640 36894909 -152384645 + AluJo SINE Alu 1 279 -33 1035 214 124 105 chr6 36894909 36895219 -152384335 + MLT1H1 LTR MaLR 227 555 0 1734 169 46 54 chr6 36895880 36896188 -152383366 + MLT1A2 LTR MaLR 3 309 -65 1803 155 3 42 chr6 36896188 36896332 -152383222 + AluJb SINE Alu 1 128 -184 2363 93 0 3 chr6 36896332 36896632 -152382922 + AluSx SINE Alu 6 304 -8 1803 155 3 42 chr6 36896632 36896796 -152382758 + AluJb SINE Alu 128 297 -15 1734 169 46 54 chr6 36896796 36896859 -152382695 + MLT1A2 LTR MaLR 309 371 -3 1674 148 50 14 chr6 36897390 36897668 -152381886 - AluJo SINE Alu -24 288 1 1528 271 53 27 chr6 36897743 36898344 -152381210 - L1MC4a LINE L1 -1733 6075 5459 32 57 0 0 chr6 36898690 36898743 -152380811 + AT_rich Low_complexity Low_complexity 1 53 0 2336 108 0 3 chr6 36898950 36899257 -152380297 - AluSc SINE Alu -3 306 1 465 215 51 82 chr6 36899418 36899613 -152379941 - MLT1J LTR MaLR -33 478 290 2409 99 0 0 chr6 36899650 36899952 -152379602 - AluSq SINE Alu -7 306 5 319 164 0 41 chr6 36900471 36900496 -152379058 - MER72 LTR ERV1 0 722 698 1400 172 122 7 chr6 36900496 36900618 -152378936 + AluJo SINE Alu 1 108 -204 234 0 0 0 chr6 36900618 36900644 -152378910 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1400 172 122 7 chr6 36900644 36900800 -152378754 + AluJo SINE Alu 108 311 -1 319 164 0 41 chr6 36900800 36900847 -152378707 - MER72 LTR ERV1 -24 698 653 649 146 10 0 chr6 36900850 36900946 -152378608 + AluJ/FLAM SINE Alu 3 99 -213 1641 127 15 42 chr6 36900947 36901295 -152378259 - MER61C LTR ERV1 0 434 1 1072 165 0 0 chr6 36901332 36901502 -152378052 + FRAM SINE Alu 1 170 -6 975 262 118 3 chr6 36901555 36901902 -152377652 - LTR16C LTR ERVL 0 491 105 4300 155 61 24 chr6 36902330 36902894 -152376660 + MER49 LTR ERV1 1 607 -316 2417 76 6 19 chr6 36902894 36903208 -152376346 - AluY SINE Alu -1 310 1 4300 155 61 24 chr6 36903208 36903476 -152376078 + MER49 LTR ERV1 607 864 -59 1380 159 0 14 chr6 36903476 36903696 -152375858 - AluJb SINE Alu -1 311 95 1489 131 20 31 chr6 36903696 36904038 -152375516 + MER61C LTR ERV1 3 434 0 205 222 10 61 chr6 36904272 36904371 -152375183 + GA-rich Low_complexity Low_complexity 2 95 0 180 0 0 0 chr6 36905352 36905372 -152374182 + (T)n Simple_repeat Simple_repeat 1 20 0 4169 122 44 2 chr6 36905390 36906004 -152373550 - LTR9B LTR ERV1 0 644 5 1722 143 8 11 chr6 36906009 36906275 -152373279 - AluSq SINE Alu -48 265 1 675 205 0 0 chr6 36906424 36906541 -152373013 + FLAM_C SINE Alu 1 117 -26 2412 99 0 3 chr6 36906545 36906857 -152372697 - AluSq SINE Alu 0 313 3 21 0 0 0 chr6 36906883 36906904 -152372650 + AT_rich Low_complexity Low_complexity 1 21 0 2356 106 0 3 chr6 36906904 36907216 -152372338 + AluSx SINE Alu 1 311 -1 801 96 0 0 chr6 36907291 36907395 -152372159 + AluSg/x SINE Alu 196 299 -10 1426 144 31 126 chr6 36907668 36907994 -152371560 + AluJo SINE Alu 1 295 -17 1391 236 87 74 chr6 36908155 36908791 -152370763 - MER21B LTR ERV1 -192 671 28 29 94 0 0 chr6 36909365 36909450 -152370104 + AT_rich Low_complexity Low_complexity 1 85 0 258 299 45 23 chr6 36909937 36910114 -152369440 - L1MC5 LINE L1 -52 7909 7729 2416 108 19 17 chr6 36910586 36910948 -152368606 + THE1B LTR MaLR 1 363 -1 2011 140 6 32 chr6 36910948 36911262 -152368292 + AluSx SINE Alu 1 306 -6 10175 100 43 43 chr6 36911275 36912854 -152366700 + THE1B-int LTR MaLR 2 1580 0 2059 114 7 7 chr6 36912854 36913160 -152366394 + THE1B LTR MaLR 1 306 -58 620 150 9 0 chr6 36913161 36913274 -152366280 + CT-rich Low_complexity Low_complexity 3 116 0 2285 109 23 0 chr6 36913274 36913578 -152365976 - AluSx SINE Alu -1 311 1 386 138 0 0 chr6 36913583 36913641 -152365913 + THE1B LTR MaLR 371 428 0 806 238 9 53 chr6 36913666 36913953 -152365601 + L1ME1 LINE L1 5872 6291 -21 2582 64 0 3 chr6 36913976 36914287 -152365267 + AluY SINE Alu 1 310 -1 3993 138 19 17 chr6 36914449 36914638 -152364916 - MER41B LTR ERV1 -2 633 446 2068 118 51 0 chr6 36914638 36914934 -152364620 - AluSx SINE Alu -1 311 1 3993 138 19 17 chr6 36914934 36915376 -152364178 - MER41B LTR ERV1 -189 446 1 1101 278 80 17 chr6 36915794 36916269 -152363285 + MLT1J LTR MaLR 1 505 -6 286 306 126 9 chr6 36917904 36918015 -152361539 - L2 LINE L2 0 3272 3149 1868 161 7 0 chr6 36918401 36918711 -152360843 + AluJb SINE Alu 1 312 0 768 246 77 0 chr6 36918810 36919017 -152360537 + MLT1J LTR MaLR 1 223 -288 2083 133 0 0 chr6 36919052 36919354 -152360200 + AluSx SINE Alu 1 302 -10 2171 141 42 33 chr6 36919370 36919731 -152359823 - THE1B LTR MaLR 0 364 1 10226 85 26 82 chr6 36919731 36920784 -152358770 - THE1B-int LTR MaLR 0 1580 469 926 87 63 0 chr6 36920784 36920911 -152358643 + AluJb SINE Alu 1 135 -177 2155 110 3 13 chr6 36920911 36921220 -152358334 + AluSx SINE Alu 1 306 -6 10226 85 26 82 chr6 36921220 36921713 -152357841 - THE1B-int LTR MaLR -1109 471 1 2229 133 33 41 chr6 36921713 36922080 -152357474 - THE1B LTR MaLR 0 364 1 1373 193 4 23 chr6 36922083 36922347 -152357207 + AluJo SINE Alu 24 282 -30 2122 123 7 0 chr6 36923184 36923485 -152356069 - AluSg SINE Alu -7 303 1 1706 125 110 115 chr6 36923592 36923754 -152355800 + MSTA LTR MaLR 22 183 -245 2198 94 13 0 chr6 36923754 36924061 -152355493 + AluSp SINE Alu 1 311 -2 1706 125 110 115 chr6 36924061 36924307 -152355247 + MSTA LTR MaLR 183 428 0 969 115 4 183 chr6 36924698 36924933 -152354621 + 7SK RNA RNA 1 193 0 2708 150 21 2 chr6 36925601 36926021 -152353533 - MSTA LTR MaLR 0 428 1 1473 195 34 0 chr6 36926164 36926462 -152353092 + AluJo SINE Alu 1 308 -4 4902 115 48 12 chr6 36926597 36927407 -152352147 - Tigger1 DNA MER2_type -1 2417 1579 2275 100 0 22 chr6 36927407 36927727 -152351827 - AluSq SINE Alu 0 313 1 1026 91 0 0 chr6 36927729 36927861 -152351693 - AluSq/x SINE Alu -181 132 1 5064 98 1 12 chr6 36927861 36928613 -152350941 - Tigger1 DNA MER2_type -829 1589 846 237 108 0 0 chr6 36928698 36928735 -152350819 + (TG)n Simple_repeat Simple_repeat 2 38 0 404 115 0 39 chr6 36928746 36928824 -152350730 + MLT1F LTR MaLR 468 542 0 4569 171 56 67 chr6 36929248 36930330 -152349224 + MER11C LTR ERVK 1 1071 0 1084 229 76 38 chr6 36930428 36930448 -152349106 - MLT1I LTR MaLR 0 409 391 2239 97 0 3 chr6 36930448 36930747 -152348807 + AluSc SINE Alu 1 298 -11 1084 229 76 38 chr6 36930747 36930773 -152348781 - MLT1I LTR MaLR -18 391 367 1998 147 0 0 chr6 36930773 36931072 -152348482 - AluSx SINE Alu -13 299 1 1084 229 76 38 chr6 36931072 36931365 -152348189 - MLT1I LTR MaLR -42 367 56 309 180 22 11 chr6 36931365 36931454 -152348100 - L1MDa LINE L1 -4456 2084 1995 753 193 0 0 chr6 36931454 36931573 -152347981 + AluJb SINE Alu 2 120 -192 189 107 0 0 chr6 36931575 36931603 -152347951 + (CA)n Simple_repeat Simple_repeat 1 28 0 452 17 33 0 chr6 36931605 36931665 -152347889 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 5498 196 70 40 chr6 36931666 36932624 -152346930 - L1MDa LINE L1 -4537 2003 1075 1659 185 3 10 chr6 36932624 36932916 -152346638 - AluJb SINE Alu -22 290 1 5498 196 70 40 chr6 36932916 36932977 -152346577 - L1MDa LINE L1 -5465 1075 1017 324 0 0 0 chr6 36932977 36933013 -152346541 + (TG)n Simple_repeat Simple_repeat 2 37 0 5498 196 70 40 chr6 36933013 36933378 -152346176 - L1MDa LINE L1 -5523 1017 576 1709 148 42 61 chr6 36933410 36933787 -152345767 + LTR8A LTR ERV1 358 727 0 644 246 59 27 chr6 36933789 36933976 -152345578 + LTR16C LTR ERVL 299 491 0 715 242 39 13 chr6 36934026 36934212 -152345342 - AluJ SINE Alu 0 302 137 833 142 0 43 chr6 36934212 36934322 -152345232 - AluJ SINE Alu -176 136 32 4111 99 7 14 chr6 36934322 36934645 -152344909 + MER41A LTR ERV1 1 321 -233 2040 115 0 10 chr6 36934645 36934964 -152344590 + AluSq SINE Alu 1 316 0 4111 99 7 14 chr6 36934964 36935197 -152344357 + MER41A LTR ERV1 321 554 0 833 142 0 43 chr6 36935197 36935227 -152344327 - AluJ SINE Alu -280 32 2 2200 81 0 3 chr6 36935228 36935525 -152344029 - AluY SINE Alu -15 296 1 3276 134 81 29 chr6 36935671 36936253 -152343301 + LTR9 LTR ERV1 1 612 0 24 0 0 0 chr6 36936428 36936452 -152343102 + AT_rich Low_complexity Low_complexity 1 24 0 233 268 36 72 chr6 36936932 36937094 -152342460 + MIR SINE MIR 31 195 -67 1278 201 73 28 chr6 36937240 36937384 -152342170 + AluJo SINE Alu 1 137 -165 2287 92 0 0 chr6 36937384 36937687 -152341867 + AluSg SINE Alu 1 303 -7 1278 201 73 28 chr6 36937687 36937830 -152341724 + AluJo SINE Alu 137 301 -1 399 309 36 26 chr6 36937833 36938027 -152341527 + MIR SINE MIR 48 243 -19 855 187 13 0 chr6 36938626 36938776 -152340778 - FRAM SINE Alu -4 172 21 1958 122 0 10 chr6 36939524 36939845 -152339709 - AluSq SINE Alu 0 313 3 1882 121 0 7 chr6 36939859 36940132 -152339422 - AluSx SINE Alu -5 307 37 1755 133 65 0 chr6 36940574 36940852 -152338702 - AluJb SINE Alu -15 297 2 213 111 0 28 chr6 36943974 36944010 -152335544 + (TCC)n Simple_repeat Simple_repeat 1 35 0 249 206 19 62 chr6 36944607 36944767 -152334787 + (CGGG)n Simple_repeat Simple_repeat 2 154 0 247 286 0 13 chr6 36944855 36944932 -152334622 + G-rich Low_complexity Low_complexity 3 78 0 229 187 0 53 chr6 36945022 36945097 -152334457 + C-rich Low_complexity Low_complexity 1 71 0 409 232 232 0 chr6 36947391 36947533 -152332021 - MER5A DNA MER1_type -1 188 14 182 375 98 0 chr6 36947597 36947709 -152331845 - L3 LINE CR1 -2 1575 1453 230 341 78 15 chr6 36947916 36948186 -152331368 - L1MC4a LINE L1 -1834 5974 5688 864 117 0 35 chr6 36948194 36948339 -152331215 - FLAM_C SINE Alu -1 142 3 294 325 55 17 chr6 36948342 36948761 -152330793 - L1MC4a LINE L1 -487 5675 5219 550 289 12 0 chr6 36948827 36948993 -152330561 + MIR SINE MIR 84 251 -11 443 238 0 57 chr6 36949929 36950051 -152329503 + L2 LINE L2 2204 2318 -996 816 113 8 16 chr6 36950051 36950175 -152329379 - FLAM_C SINE Alu -8 135 13 1333 264 78 26 chr6 36950176 36950896 -152328658 + L2 LINE L2 2308 3060 -253 390 21 0 0 chr6 36951969 36952016 -152327538 + (TG)n Simple_repeat Simple_repeat 2 48 0 362 223 240 0 chr6 36952100 36952221 -152327333 - MER91B DNA MER1_type -1 189 40 304 269 140 31 chr6 36954016 36954209 -152325345 - LTR33 LTR ERVL -134 387 174 383 240 30 0 chr6 36954254 36954354 -152325200 - LTR33 LTR ERVL -418 103 1 2150 114 10 0 chr6 36954411 36954717 -152324837 + AluSq SINE Alu 1 309 -4 254 308 58 25 chr6 36954756 36954876 -152324678 + MIR SINE MIR 77 200 -62 412 160 51 29 chr6 36955446 36955621 -152323933 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 272 200 15 15 chr6 36955637 36955702 -152323852 + (TCCA)n Simple_repeat Simple_repeat 3 67 0 1731 209 65 32 chr6 36960867 36960965 -152318589 - Charlie4a DNA MER1_type -1453 508 415 2012 140 7 3 chr6 36960965 36961273 -152318281 + AluSx SINE Alu 1 309 -3 1731 209 65 32 chr6 36961273 36961666 -152317888 - Charlie4a DNA MER1_type -1546 415 1 576 303 48 63 chr6 36961670 36961844 -152317710 + L3 LINE CR1 681 856 -721 1535 183 37 27 chr6 36961844 36962139 -152317415 + AluJo SINE Alu 1 298 -4 576 303 48 63 chr6 36962139 36962377 -152317177 + L3 LINE CR1 856 1087 -490 2313 82 0 7 chr6 36962496 36962800 -152316754 - AluSg SINE Alu -8 302 1 1003 325 98 27 chr6 36962814 36963589 -152315965 + L2 LINE L2 2346 3174 -98 206 240 20 0 chr6 36963661 36963711 -152315843 + L3 LINE CR1 1295 1345 -232 * 303 274 138 37 chr6 36963710 36963923 -152315631 - MIR SINE MIR 0 262 28 2275 94 0 0 chr6 36963923 36964230 -152315324 - AluSg SINE Alu -3 307 1 303 274 138 37 chr6 36964230 36964245 -152315309 - MIR SINE MIR -234 28 16 1182 149 5 21 chr6 36964334 36964528 -152315026 + AluSg/x SINE Alu 88 278 -32 2008 136 0 16 chr6 36964572 36964889 -152314665 - AluJb SINE Alu 0 312 1 2051 128 13 0 chr6 36964982 36965287 -152314267 - AluSx SINE Alu -3 309 1 225 83 0 0 chr6 36965288 36965324 -152314230 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1969 102 14 14 chr6 36965324 36965608 -152313946 - AluSq SINE Alu -29 284 1 838 228 30 0 chr6 36965614 36965781 -152313773 - AluJo SINE Alu -21 291 120 1116 123 48 21 chr6 36965785 36965956 -152313598 - AluJb SINE Alu 0 312 134 2282 78 7 10 chr6 36965956 36966263 -152313291 - AluSq SINE Alu -7 306 1 1116 123 48 21 chr6 36966263 36966278 -152313276 - AluJb SINE Alu -178 134 121 257 183 0 28 chr6 36966361 36966432 -152313122 + CT-rich Low_complexity Low_complexity 1 69 0 1584 169 0 30 chr6 36966432 36966727 -152312827 - AluJo SINE Alu -26 286 1 225 154 0 0 chr6 36966729 36966768 -152312786 + T-rich Low_complexity Low_complexity 1 39 0 854 111 55 99 chr6 36967134 36967175 -152312379 - AluJo/FRAM SINE Alu -4 308 267 2156 128 0 6 chr6 36967175 36967488 -152312066 + AluSx SINE Alu 1 311 -1 854 111 55 99 chr6 36967488 36967627 -152311927 - AluJo/FRAM SINE Alu -45 267 136 2275 87 6 3 chr6 36967946 36968258 -152311296 - AluSq SINE Alu 0 313 1 202 241 0 19 chr6 36968619 36968673 -152310881 + CT-rich Low_complexity Low_complexity 2 54 0 227 186 14 43 chr6 36968862 36968932 -152310622 + GA-rich Low_complexity Low_complexity 1 68 0 2167 128 0 3 chr6 36970756 36971069 -152308485 - AluSx SINE Alu 0 312 1 565 330 58 5 chr6 36973067 36973291 -152306263 + MIR SINE MIR 13 248 -14 23 0 0 0 chr6 36974659 36974682 -152304872 + GC_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr6 36976884 36976904 -152302650 + (TG)n Simple_repeat Simple_repeat 2 21 0 27 0 0 0 chr6 36976904 36976931 -152302623 + AT_rich Low_complexity Low_complexity 1 27 0 185 237 0 0 chr6 36977248 36977286 -152302268 + L2 LINE L2 3225 3262 -10 493 256 43 0 chr6 37077569 37077686 -152201868 - L2 LINE L2 -3 3310 3189 1664 210 46 54 chr6 37080911 37081410 -152198144 - MLT1D LTR MaLR -9 496 2 288 219 48 19 chr6 37081503 37081608 -152197946 + L1MC5 LINE L1 7819 7926 -35 210 37 0 0 chr6 37082722 37082749 -152196805 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 764 123 35 0 chr6 37085610 37085724 -152193830 + FLAM_C SINE Alu 1 118 -25 27 0 0 0 chr6 37085729 37085756 -152193798 + AT_rich Low_complexity Low_complexity 1 27 0 258 264 57 57 chr6 37086507 37086613 -152192941 + MIR SINE MIR 95 200 -62 2076 136 13 3 chr6 37086628 37086937 -152192617 - AluSq SINE Alu -1 312 1 686 281 23 65 chr6 37087226 37087410 -152192144 + MIR SINE MIR 14 185 -77 2019 126 3 26 chr6 37087410 37087720 -152191834 + AluSx SINE Alu 1 303 -9 686 281 23 65 chr6 37087720 37087795 -152191759 + MIR SINE MIR 185 262 0 375 333 111 5 chr6 37087837 37088079 -152191475 - MIR SINE MIR 0 262 1 439 245 182 0 chr6 37089580 37089723 -152189831 + MER3 DNA MER1_type 27 195 -14 460 321 73 24 chr6 37089861 37090026 -152189528 + MIR SINE MIR 20 192 -70 2230 88 0 7 chr6 37090288 37090583 -152188971 + AluSq SINE Alu 1 293 -20 248 93 23 0 chr6 37092001 37092044 -152187510 + Alu SINE Alu 16 59 -261 495 338 68 32 chr6 37092105 37092324 -152187230 - MIR SINE MIR -8 254 28 2123 110 7 0 chr6 37092481 37092773 -152186781 + AluSx SINE Alu 1 294 -18 459 0 0 0 chr6 37095357 37095408 -152184146 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1665 86 0 0 chr6 37095429 37095638 -152183916 + AluSq SINE Alu 82 290 -23 334 295 6 66 chr6 37095663 37095829 -152183725 + L2 LINE L2 3095 3250 -63 226 291 105 12 chr6 37096209 37096295 -152183259 - MIR3 SINE MIR -112 96 3 286 303 97 35 chr6 37096661 37096806 -152182748 + L2 LINE L2 3119 3272 0 296 341 40 40 chr6 37097400 37097576 -152181978 + MIR SINE MIR 32 207 -55 198 374 74 12 chr6 37097519 37097682 -152181872 - L2 LINE L2 -20 3293 3121 * 1045 142 0 12 chr6 37097757 37097919 -152181635 + AluJb SINE Alu 134 293 -19 180 0 0 0 chr6 37097919 37097939 -152181615 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1506 158 57 57 chr6 37098078 37098227 -152181327 - AluJo SINE Alu -14 298 150 2177 59 42 7 chr6 37098227 37098515 -152181039 - AluY SINE Alu -12 299 2 1506 158 57 57 chr6 37098515 37098663 -152180891 - AluJo SINE Alu -161 151 1 812 175 7 14 chr6 37098664 37098807 -152180747 - FLAM_A SINE Alu 0 142 1 240 250 0 0 chr6 37098811 37098867 -152180687 - FAM SINE Alu -2 173 118 2217 99 0 19 chr6 37099127 37099439 -152180115 + AluSg SINE Alu 1 306 -4 515 243 112 56 chr6 37099445 37099659 -152179895 + MIR SINE MIR 6 231 -31 328 175 16 0 chr6 37099704 37099767 -152179787 - LTR16C LTR ERVL -2 489 426 1626 150 62 0 chr6 37099780 37100054 -152179500 + AluJb SINE Alu 1 291 -21 2166 108 0 3 chr6 37100056 37100344 -152179210 + AluSx SINE Alu 1 287 -25 234 0 0 0 chr6 37100347 37100373 -152179181 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1881 169 3 0 chr6 37100384 37100679 -152178875 + AluJo SINE Alu 1 296 -16 215 311 220 10 chr6 37101003 37101212 -152178342 - L2 LINE L2 -88 3184 2932 21 36 0 0 chr6 37101580 37101608 -152177946 + AT_rich Low_complexity Low_complexity 1 28 0 2244 95 0 7 chr6 37101790 37102094 -152177460 - AluSx SINE Alu -7 305 4 2444 60 0 10 chr6 37102107 37102421 -152177133 - AluY SINE Alu 0 311 1 308 183 29 203 chr6 37102597 37102638 -152176916 - Charlie2 DNA MER1_type -28 2834 2788 1823 153 7 3 chr6 37102638 37102932 -152176622 - AluJb SINE Alu -17 295 1 308 183 29 203 chr6 37102932 37103037 -152176517 - Charlie2 DNA MER1_type -74 2788 2765 1764 105 82 8 chr6 37103037 37103333 -152176221 - AluSx SINE Alu 0 316 1 308 183 29 203 chr6 37103333 37103494 -152176060 - Charlie2 DNA MER1_type -97 2765 2578 1632 154 19 68 chr6 37103571 37103896 -152175658 + AluJb SINE Alu 1 309 -3 2083 133 0 13 chr6 37103921 37104237 -152175317 + AluSx SINE Alu 1 312 0 363 237 0 0 chr6 37104361 37104437 -152175117 - Charlie2 DNA MER1_type -2681 101 26 2339 78 7 0 chr6 37104686 37104993 -152174561 + AluSg SINE Alu 1 309 -1 2433 52 10 3 chr6 37104993 37105300 -152174254 + AluY SINE Alu 1 310 -1 197 0 71 0 chr6 37106170 37106198 -152173356 + (CCCCAG)n Simple_repeat Simple_repeat 1 30 0 218 329 185 41 chr6 37107786 37108148 -152171406 + L2 LINE L2 2301 2714 -600 2332 74 7 7 chr6 37108152 37108449 -152171105 + AluSp SINE Alu 1 297 -16 406 157 129 0 chr6 37108466 37108536 -152171018 + AluJ/FLAM SINE Alu 1 79 -233 1351 146 39 39 chr6 37108889 37109143 -152170411 - AluJo SINE Alu -32 280 27 955 64 24 0 chr6 37109143 37109268 -152170286 + AluSp/q SINE Alu 167 294 -19 2138 115 3 10 chr6 37109319 37109633 -152169921 - AluSx SINE Alu 0 312 1 202 253 253 47 chr6 37109769 37109939 -152169615 + L2 LINE L2 3001 3205 -108 433 285 126 61 chr6 37111455 37111594 -152167960 + L1MC4 LINE L1 7716 7845 -197 2040 119 3 0 chr6 37111594 37111887 -152167667 + AluSc SINE Alu 6 299 -10 433 285 126 61 chr6 37111887 37112010 -152167544 + L1MC4 LINE L1 7845 7995 -47 1753 167 0 3 chr6 37112012 37112305 -152167249 - AluSx SINE Alu -20 292 1 318 148 16 0 chr6 37112305 37112366 -152167188 + L1ME3A LINE L1 6043 6104 -66 2071 116 7 3 chr6 37113874 37114176 -152165378 + AluSx SINE Alu 1 303 -9 2335 80 0 3 chr6 37114929 37115228 -152164326 + AluSg SINE Alu 1 298 -12 2090 94 7 42 chr6 37115487 37115796 -152163758 + AluSx SINE Alu 1 298 -14 621 113 0 0 chr6 37116678 37116758 -152162796 + AluS SINE Alu 7 86 -226 371 306 79 29 chr6 37216921 37216990 -152062564 - MIR SINE MIR -50 212 148 2135 72 45 34 chr6 37216990 37217282 -152062272 + AluSx SINE Alu 1 295 -17 371 306 79 29 chr6 37217282 37217389 -152062165 - MIR SINE MIR -114 148 30 346 330 58 12 chr6 37217423 37217596 -152061958 - MIR SINE MIR 0 262 82 905 138 7 22 chr6 37217755 37217893 -152061661 + AluJ SINE Alu 3 138 -174 1944 122 74 0 chr6 37217922 37218192 -152061362 + AluSg SINE Alu 1 290 -20 1040 180 53 0 chr6 37218217 37218406 -152061148 + AluJ SINE Alu 114 312 0 2186 127 3 0 chr6 37218406 37218706 -152060848 + AluSq SINE Alu 11 311 -2 440 230 41 76 chr6 37218910 37219096 -152060458 + MIR SINE MIR 33 215 -27 833 111 8 8 chr6 37219523 37219661 -152059893 - FLAM_C SINE Alu 0 138 1 2397 78 3 3 chr6 37219816 37220123 -152059431 - AluSc SINE Alu -2 307 1 2343 64 4 4 chr6 37220613 37220945 -152058609 - AluY SINE Alu 0 332 1 2376 104 0 0 chr6 37221001 37221300 -152058254 + AluSq SINE Alu 1 299 -14 2242 106 3 0 chr6 37221360 37221653 -152057901 - AluSq SINE Alu -19 294 1 1902 183 3 0 chr6 37221664 37221975 -152057579 - AluJb SINE Alu 0 312 1 7370 178 51 50 chr6 37221976 37222421 -152057133 + L1M1 LINE L1 73 516 -7049 816 182 0 0 chr6 37222421 37222553 -152057001 + FLAM_C SINE Alu 1 132 -1 7370 178 51 50 chr6 37222553 37223344 -152056210 + L1M1 LINE L1 516 1304 -6261 2144 124 7 0 chr6 37223344 37223643 -152055911 - AluSx SINE Alu -11 301 1 7370 178 51 50 chr6 37223643 37224400 -152055154 + L1M1 LINE L1 1304 2058 -5507 2083 96 7 7 chr6 37224400 37224692 -152054862 + AluSc SINE Alu 1 292 -17 7370 178 51 50 chr6 37224692 37224863 -152054691 + L1M1 LINE L1 2058 2227 -5338 1905 151 0 19 chr6 37224863 37225181 -152054373 - AluSx SINE Alu 0 312 1 7370 178 51 50 chr6 37225181 37225969 -152053585 + L1M1 LINE L1 2227 3180 -4385 4133 81 18 20 chr6 37225969 37226383 -152053171 + L1MA2 LINE L1 5697 6111 -193 1926 143 0 0 chr6 37226383 37226683 -152052871 - AluSx SINE Alu -12 300 1 4133 81 18 20 chr6 37226683 37226877 -152052677 + L1MA2 LINE L1 6111 6304 0 2133 84 3 3 chr6 37226902 37227244 -152052310 + AluSp SINE Alu 1 342 0 3713 159 11 32 chr6 37227258 37227662 -152051892 - L1MB8 LINE L1 -68 6110 5724 219 69 0 0 chr6 37227662 37227691 -152051863 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3713 159 11 32 chr6 37227691 37227979 -152051575 - L1MB8 LINE L1 -454 5724 5432 2145 122 0 0 chr6 37228035 37228347 -152051207 + AluSx SINE Alu 1 312 0 4483 114 24 36 chr6 37228702 37228931 -152050623 - MER50 LTR ERV1 -23 711 481 2348 87 7 0 chr6 37228931 37229241 -152050313 - AluSx SINE Alu 0 312 1 4483 114 24 36 chr6 37229241 37229731 -152049823 - MER50 LTR ERV1 -253 481 1 25 0 0 0 chr6 37229853 37229878 -152049676 + AT_rich Low_complexity Low_complexity 1 25 0 225 222 0 0 chr6 37230037 37230082 -152049472 - L1MC4a LINE L1 -916 6892 6848 381 43 0 0 chr6 37230101 37230148 -152049406 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 1669 168 27 3 chr6 37230160 37230458 -152049096 - AluJb SINE Alu -7 305 1 359 291 11 84 chr6 37230458 37230637 -152048917 - L1MC4 LINE L1 -1112 6930 6765 1647 151 11 25 chr6 37230689 37230998 -152048556 - AluJb SINE Alu 0 305 1 794 111 22 44 chr6 37231385 37231520 -152048034 + MLT1B LTR MaLR 16 147 -243 1999 119 0 0 chr6 37232363 37232640 -152046914 + AluSx SINE Alu 1 277 -35 288 0 0 0 chr6 37232648 37232680 -152046874 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 513 268 32 25 chr6 37233256 37233413 -152046141 + MIR SINE MIR 105 262 0 1704 119 48 24 chr6 37233429 37233586 -152045968 - AluSx SINE Alu -10 302 133 2109 111 20 0 chr6 37233586 37233884 -152045670 - AluSx SINE Alu -8 304 1 1704 119 48 24 chr6 37233884 37234021 -152045533 - AluSx SINE Alu -179 133 1 503 205 86 8 chr6 37234023 37234140 -152045414 - MIR SINE MIR -67 195 70 657 128 96 32 chr6 37234526 37234651 -152044903 - FLAM_C SINE Alu 0 133 1 1899 130 65 6 chr6 37235067 37235391 -152044163 - MER61A LTR ERV1 0 343 1 1159 154 4 53 chr6 37235602 37235849 -152043705 - AluJo SINE Alu -77 235 1 303 258 114 74 chr6 37235935 37236233 -152043321 - L1M2 LINE L1 -4797 2052 1743 2177 98 0 10 chr6 37236264 37236570 -152042984 + AluSp SINE Alu 1 303 -10 31 26 0 0 chr6 37236570 37236608 -152042946 + AT_rich Low_complexity Low_complexity 1 38 0 1829 142 3 0 chr6 37236608 37236890 -152042664 - AluJb SINE Alu -29 283 1 716 173 17 23 chr6 37236905 37237078 -152042476 + L1MB4 LINE L1 5776 5947 -233 24 0 0 0 chr6 37237100 37237124 -152042430 + AT_rich Low_complexity Low_complexity 1 24 0 374 100 17 0 chr6 37237176 37237236 -152042318 + (TG)n Simple_repeat Simple_repeat 2 62 0 1009 161 5 55 chr6 37237246 37237280 -152042274 - L1MB4 LINE L1 -14 6166 6132 270 0 0 0 chr6 37237280 37237310 -152042244 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2106 96 0 0 chr6 37237314 37237595 -152041959 - AluSx SINE Alu -31 281 1 1009 161 5 55 chr6 37237595 37237772 -152041782 - L1MB4 LINE L1 -51 6129 5961 794 140 0 70 chr6 37237780 37237923 -152041631 - FLAM_C SINE Alu 0 133 1 711 132 20 123 chr6 37237998 37238129 -152041425 - L1MB4 LINE L1 -233 5947 5839 2103 78 0 11 chr6 37238129 37238437 -152041117 + AluSx SINE Alu 2 306 0 711 132 20 123 chr6 37238437 37238506 -152041048 - L1MB4 LINE L1 -341 5839 5765 911 102 0 29 chr6 37238546 37238683 -152040871 - FLAM_C SINE Alu 0 133 1 309 226 116 110 chr6 37239007 37239153 -152040401 - L1MC5 LINE L1 -36 7925 7779 753 237 6 35 chr6 37239713 37239802 -152039752 - MER115 DNA AcHobo -81 612 529 662 226 89 96 chr6 37239802 37240038 -152039516 + LTR16A1 LTR ERVL 1 235 -222 2061 92 0 7 chr6 37240038 37240350 -152039204 - AluSq SINE Alu 0 310 1 662 226 89 96 chr6 37240350 37240572 -152038982 + LTR16A1 LTR ERVL 235 457 0 753 237 6 35 chr6 37240572 37240655 -152038899 - MER115 DNA AcHobo -164 529 445 763 332 77 16 chr6 37240725 37241035 -152038519 - MER115 DNA AcHobo -359 334 6 554 200 37 0 chr6 37241620 37241755 -152037799 + L1MD3 LINE L1 7844 7983 -12 2067 86 4 0 chr6 37241809 37242123 -152037431 + AluSq SINE Alu 5 319 0 1882 126 0 23 chr6 37243109 37243410 -152036144 - AluSq SINE Alu -17 296 3 523 62 0 0 chr6 37243428 37243492 -152036062 - U6 snRNA snRNA -6 101 38 1170 99 0 12 chr6 37243534 37243696 -152035858 - AluSq SINE Alu -153 160 1 22 56 0 0 chr6 37243748 37243784 -152035770 + AT_rich Low_complexity Low_complexity 1 36 0 260 283 67 8 chr6 37243978 37244098 -152035456 - LTR67 LTR ERVL 0 557 431 1837 141 23 13 chr6 37244327 37244631 -152034923 - AluSx SINE Alu -5 307 1 1392 230 100 84 chr6 37244671 37244966 -152034588 - HAL1 LINE L1 -689 1818 1529 1705 157 23 33 chr6 37244966 37245266 -152034288 + AluJo SINE Alu 13 309 -3 1392 230 100 84 chr6 37245266 37245604 -152033950 - HAL1 LINE L1 -978 1529 1171 1950 127 33 7 chr6 37245604 37245904 -152033650 - AluSx SINE Alu -4 308 1 1392 230 100 84 chr6 37245904 37245957 -152033597 - HAL1 LINE L1 -1336 1171 1120 409 237 50 111 chr6 37245960 37246085 -152033469 - HAL1 LINE L1 -1471 1036 926 1687 162 30 3 chr6 37246085 37246387 -152033167 - AluJb SINE Alu -2 310 1 409 237 50 111 chr6 37246387 37246459 -152033095 - HAL1 LINE L1 -1581 926 851 594 226 94 19 chr6 37246462 37246621 -152032933 + LTR41 LTR ERVL 9 179 -594 251 158 85 85 chr6 37246986 37247068 -152032486 + LTR41 LTR ERVL 651 732 -41 676 221 197 52 chr6 37247225 37247277 -152032277 - LTR50 LTR ERVL -8 787 744 2179 99 7 0 chr6 37247277 37247579 -152031975 - AluSq SINE Alu -7 306 3 676 221 197 52 chr6 37247579 37248041 -152031513 - LTR50 LTR ERVL -51 744 93 349 374 35 0 chr6 37248084 37248258 -152031296 - HAL1 LINE L1 -1787 720 541 199 131 36 36 chr6 37248267 37248351 -152031203 + T-rich Low_complexity Low_complexity 2 85 0 857 157 0 8 chr6 37248403 37248537 -152031017 - FLAM_C SINE Alu 0 133 1 550 283 113 36 chr6 37248584 37248895 -152030659 - HAL1 LINE L1 -2045 462 110 221 0 35 0 chr6 37248895 37248924 -152030630 + (TC)n Simple_repeat Simple_repeat 1 30 0 550 283 113 36 chr6 37248924 37249026 -152030528 - HAL1 LINE L1 -2397 110 17 2010 107 0 29 chr6 37249044 37249353 -152030201 + AluSp SINE Alu 1 300 -13 1790 158 0 7 chr6 37249872 37250193 -152029361 + AluJb SINE Alu 1 319 0 1768 155 10 7 chr6 37250197 37250494 -152029060 + AluJb SINE Alu 1 298 -14 366 250 20 40 chr6 37250510 37250610 -152028944 - L1ME4a LINE L1 -58 6063 5966 876 204 32 0 chr6 37250611 37250797 -152028757 - AluJo SINE Alu 0 312 121 1991 118 10 3 chr6 37251108 37251414 -152028140 + AluSx SINE Alu 1 308 -4 1253 206 0 40 chr6 37251423 37251671 -152027883 + MER8 DNA MER2_type 1 238 -1 35 24 0 0 chr6 37252277 37252319 -152027235 + AT_rich Low_complexity Low_complexity 1 42 0 1722 167 0 17 chr6 37252319 37252612 -152026942 - AluJb SINE Alu -24 288 1 1690 153 122 82 chr6 37252615 37252971 -152026583 + MLT2D LTR ERVL 7 382 -32 228 35 0 0 chr6 37252971 37253000 -152026554 + (GA)n Simple_repeat Simple_repeat 1 29 0 1690 153 122 82 chr6 37253000 37253035 -152026519 + MLT2D LTR ERVL 382 414 0 1573 109 113 4 chr6 37253185 37253462 -152026092 - AluSx SINE Alu 0 305 1 250 276 86 9 chr6 37253604 37253720 -152025834 - L1ME4a LINE L1 -381 5740 5616 1528 171 49 3 chr6 37254364 37254668 -152024886 - MER33 DNA MER1_type -6 318 1 2029 105 0 33 chr6 37254760 37255065 -152024489 - AluSq SINE Alu -18 295 1 1308 200 0 24 chr6 37256065 37256320 -152023234 + AluJb SINE Alu 7 255 -57 301 298 50 21 chr6 37256320 37256461 -152023093 + L1M4 LINE L1 3182 3326 -2820 227 264 111 14 chr6 37256603 37256675 -152022879 - MIR3 SINE MIR -125 83 5 284 322 76 17 chr6 37256744 37256862 -152022692 + L2 LINE L2 3189 3313 0 270 136 0 0 chr6 37256941 37256985 -152022569 + (TA)n Simple_repeat Simple_repeat 1 44 0 797 151 0 0 chr6 37256985 37257104 -152022450 - FLAM_C SINE Alu -20 123 5 597 251 30 12 chr6 37257136 37257303 -152022251 + MER104 DNA Tc2 4 173 -7 885 55 12 93 chr6 37258213 37258470 -152021084 + (TCTCCC)n Simple_repeat Simple_repeat 1 236 0 10425 45 8 55 chr6 37258475 37259929 -152019625 + SVA Other Other 2 1386 0 199 231 0 0 chr6 37260278 37260317 -152019237 + L2 LINE L2 3153 3191 -81 200 355 84 0 chr6 37260349 37260456 -152019098 + L3b LINE CR1 1179 1294 -289 468 284 43 81 chr6 37260497 37260708 -152018846 + MIR SINE MIR 30 232 -30 234 310 11 23 chr6 37260713 37260800 -152018754 + L2 LINE L2 3009 3094 -178 2219 105 0 0 chr6 37260959 37261254 -152018300 + AluSg SINE Alu 1 295 -15 498 274 8 0 chr6 37261348 37261472 -152018082 - MER104 DNA Tc2 -3 177 53 625 177 24 8 chr6 37261487 37261611 -152017943 - FLAM_C SINE Alu -5 128 3 2156 109 0 3 chr6 37261623 37261926 -152017628 - AluSx SINE Alu -6 306 5 342 238 90 58 chr6 37262032 37262221 -152017333 - L2 LINE L2 -89 3224 3030 1968 153 0 0 chr6 37263126 37263433 -152016121 - AluJo SINE Alu -5 307 1 1843 153 6 10 chr6 37263439 37263752 -152015802 - AluJb SINE Alu 0 312 1 450 250 73 101 chr6 37264454 37264782 -152014772 - MLT1J LTR MaLR -84 427 109 2120 91 7 0 chr6 37265384 37265669 -152013885 + AluSx SINE Alu 1 287 -25 2201 79 3 3 chr6 37266348 37266639 -152012915 + AluSq SINE Alu 1 291 -22 2066 104 7 7 chr6 37267327 37267626 -152011928 - AluSg SINE Alu -11 299 1 3253 135 18 6 chr6 37268478 37268967 -152010587 + LTR42 LTR ERVL 1 495 0 243 0 0 0 chr6 37271189 37271216 -152008338 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 2126 120 0 0 chr6 37271232 37271532 -152008022 - AluSx SINE Alu -12 300 1 1527 189 0 7 chr6 37271541 37271837 -152007717 - AluJo SINE Alu -1 311 18 2137 103 59 18 chr6 37272923 37273264 -152006290 - THE1A LTR MaLR 0 355 1 1874 148 6 10 chr6 37273600 37273997 -152005557 - AluJb SINE Alu 0 397 2 287 167 17 17 chr6 37274113 37274173 -152005381 - L1ME1 LINE L1 -11 6155 6096 576 181 101 0 chr6 37274196 37274345 -152005209 - L1MD3 LINE L1 0 7995 7832 960 123 0 0 chr6 37274387 37274525 -152005029 - AluSp SINE Alu -23 290 153 1224 156 54 0 chr6 37274548 37274772 -152004782 - L1MD3 LINE L1 -871 7124 6889 829 180 48 12 chr6 37274772 37274939 -152004615 - FRAM SINE Alu -7 169 1 1646 198 0 0 chr6 37274952 37275250 -152004304 - AluJo SINE Alu -14 298 1 1868 136 7 10 chr6 37275265 37275574 -152003980 - AluSp SINE Alu -5 308 1 1200 241 33 13 chr6 37275575 37275874 -152003680 - L1MC4 LINE L1 -1114 6928 6624 1656 139 168 0 chr6 37275875 37276184 -152003370 - MER46B DNA MER2_type 0 236 1 1465 255 133 32 chr6 37276188 37276468 -152003086 - L1MD3 LINE L1 -1388 6607 6357 1585 161 50 17 chr6 37276468 37276766 -152002788 - AluJo SINE Alu -4 308 1 1465 255 133 32 chr6 37276766 37277132 -152002422 - L1MD3 LINE L1 -1638 6357 5896 1761 154 43 3 chr6 37277576 37277875 -152001679 - AluJo SINE Alu -1 311 1 322 308 204 36 chr6 37278136 37278493 -152001061 + L2 LINE L2 2856 3272 0 26 0 0 0 chr6 37278610 37278636 -152000918 + AT_rich Low_complexity Low_complexity 1 26 0 1011 182 76 57 chr6 37278674 37278734 -152000820 - L1ME2 LINE L1 -9 6155 6098 1937 163 0 0 chr6 37278734 37279040 -152000514 - AluJb SINE Alu -6 306 1 1011 182 76 57 chr6 37279040 37279243 -152000311 - L1ME2 LINE L1 -66 6098 5887 2007 134 0 10 chr6 37279273 37279579 -151999975 - AluSx SINE Alu -9 303 1 957 261 15 52 chr6 37281610 37281878 -151997676 - MIR SINE MIR 0 262 5 1951 115 7 10 chr6 37282119 37282414 -151997140 + AluSx SINE Alu 1 294 -18 350 289 248 8 chr6 37282858 37283100 -151996454 + L3 LINE CR1 1261 1560 -17 2099 133 0 0 chr6 37283706 37284014 -151995540 + AluSg SINE Alu 1 308 -2 295 104 10 0 chr6 37284202 37284254 -151995300 + Alu SINE Alu 254 296 -6 2274 50 0 4 chr6 37284256 37284582 -151994972 + AluY SINE Alu 1 325 0 240 102 0 61 chr6 37284962 37285011 -151994543 + MER63A DNA MER1_type 1 46 -164 361 246 18 9 chr6 37285085 37285193 -151994361 + LTR33A LTR ERVL 443 523 0 396 338 68 36 chr6 37285542 37285823 -151993731 + HERVL LTR ERVL 414 703 -5061 2648 167 55 25 chr6 37285917 37286212 -151993342 - MLT1D LTR MaLR 0 505 188 2061 121 0 0 chr6 37286212 37286509 -151993045 - AluSg SINE Alu -13 297 1 2648 167 55 25 chr6 37286509 37286703 -151992851 - MLT1D LTR MaLR -317 188 1 1181 224 59 3 chr6 37286754 37287040 -151992514 + MLT1E3 LTR MaLR 323 624 0 716 340 133 24 chr6 37287114 37287702 -151991852 + HERVL LTR ERVL 1186 1837 -3927 1873 133 7 23 chr6 37287896 37288196 -151991358 + AluSx SINE Alu 1 295 -17 357 326 34 7 chr6 37288286 37288433 -151991121 + HERVL LTR ERVL 3125 3275 -2379 2991 290 63 20 chr6 37288477 37289562 -151989992 + HERVL LTR ERVL 3404 4534 -1230 3256 234 50 30 chr6 37289601 37290699 -151988855 - L1ME3 LINE L1 0 6162 5054 227 207 0 134 chr6 37290699 37290718 -151988836 + MIR SINE MIR 178 198 -64 2276 77 0 7 chr6 37290718 37291016 -151988538 - AluSx SINE Alu -16 296 1 227 207 0 134 chr6 37291016 37291078 -151988476 + MIR SINE MIR 198 248 -14 456 364 62 4 chr6 37292291 37292516 -151987038 + MIR SINE MIR 8 245 -17 913 226 55 0 chr6 37292715 37292914 -151986640 + MER63A DNA MER1_type 1 210 0 730 127 18 30 chr6 37293171 37293336 -151986218 + CT-rich Low_complexity Low_complexity 1 163 0 1903 157 3 0 chr6 37293341 37293647 -151985907 - AluSx SINE Alu -5 307 1 2128 139 3 0 chr6 37294673 37295004 -151984550 + L1PB1 LINE L1 5812 6143 -8 805 248 81 14 chr6 37295521 37295731 -151983823 - MER58A DNA MER1_type 0 224 1 2391 70 0 0 chr6 37295997 37296295 -151983259 - AluY SINE Alu -13 298 1 638 296 181 41 chr6 37301127 37301383 -151978171 - L2 LINE L2 0 3313 3094 1915 96 82 0 chr6 37301383 37301664 -151977890 + AluSp SINE Alu 1 304 -9 638 296 181 41 chr6 37301664 37301822 -151977732 - L2 LINE L2 -219 3094 2841 1905 246 77 0 chr6 37302159 37302676 -151976878 - L1MC4 LINE L1 -229 7813 7257 1334 239 64 80 chr6 37302656 37302976 -151976578 - L1MCa LINE L1 -3876 2731 2408 * 1510 199 0 30 chr6 37302976 37303277 -151976277 - AluJb SINE Alu -20 292 1 1334 239 64 80 chr6 37303277 37303377 -151976177 - L1MCa LINE L1 -4199 2408 2308 1882 149 13 0 chr6 37303377 37303678 -151975876 - AluSx SINE Alu -2 310 6 1334 239 64 80 chr6 37303678 37304035 -151975519 - L1MCa LINE L1 -4299 2308 1965 1103 115 42 36 chr6 37304090 37304282 -151975272 + AluSp SINE Alu 17 209 -104 7965 129 90 96 chr6 37304285 37305991 -151973563 - pTR5 LTR ERV1 0 2438 743 715 71 0 10 chr6 37305991 37306089 -151973465 + AluSp SINE Alu 206 302 -11 594 302 79 18 chr6 37306115 37306570 -151972984 - L1MCa LINE L1 -4725 1882 1279 2004 110 0 0 chr6 37306686 37306959 -151972595 - AluSx SINE Alu -39 273 1 1389 287 153 34 chr6 37307090 37307895 -151971659 - L2 LINE L2 -592 2722 1822 457 291 70 78 chr6 37307933 37308379 -151971175 + HAL1 LINE L1 75 516 -1991 7017 126 182 66 chr6 37308392 37309912 -151969642 - pTR5 LTR ERV1 -1 2437 742 2816 241 87 36 chr6 37309919 37310994 -151968560 + HAL1 LINE L1 527 1656 -851 420 276 0 0 chr6 37311012 37311099 -151968455 + MLT1J1 LTR MaLR 36 122 -324 1409 253 44 39 chr6 37311189 37311647 -151967907 + MER74B LTR ERVL 70 529 -93 620 229 73 42 chr6 37311736 37311928 -151967626 + MLT1J1 LTR MaLR 242 439 -7 738 256 112 75 chr6 37311935 37312389 -151967165 + HAL1 LINE L1 1650 2120 -387 449 236 47 99 chr6 37312417 37312650 -151966904 + HAL1 LINE L1 2083 2303 -204 865 216 0 0 chr6 37312704 37312866 -151966688 + FRAM SINE Alu 1 162 -4 206 250 0 0 chr6 37313094 37313105 -151966449 + G-rich Low_complexity Low_complexity 1 11 -37 2033 117 3 3 chr6 37313105 37313405 -151966149 + AluSx SINE Alu 1 300 -12 206 250 0 0 chr6 37313405 37313441 -151966113 + G-rich Low_complexity Low_complexity 10 48 0 187 307 20 89 chr6 37313533 37313634 -151965920 + MER5A DNA MER1_type 81 174 -15 323 281 58 22 chr6 37313637 37313776 -151965778 - L2 LINE L2 -1635 1679 1536 394 253 41 89 chr6 37313901 37314047 -151965507 + L2 LINE L2 3134 3272 0 4459 113 19 6 chr6 37314649 37315332 -151964222 + L1PB1 LINE L1 5460 6151 0 737 256 20 5 chr6 37316964 37317159 -151962395 + L1ME3 LINE L1 5903 6100 -62 814 136 0 0 chr6 37317165 37317283 -151962271 + FLAM_C SINE Alu 1 118 -25 21 57 0 0 chr6 37317287 37317322 -151962232 + AT_rich Low_complexity Low_complexity 1 35 0 1005 151 155 8 chr6 37317407 37317658 -151961896 + L1MA9 LINE L1 6020 6307 -5 2067 90 27 27 chr6 37317695 37317994 -151961560 + AluSg SINE Alu 11 309 -1 743 268 24 6 chr6 37318229 37318393 -151961161 - MIR SINE MIR -85 177 11 850 221 44 72 chr6 37319289 37319529 -151960025 - Charlie2 DNA MER1_type -6 2856 2628 850 141 0 30 chr6 37319529 37319664 -151959890 - FLAM_C SINE Alu -1 132 2 850 221 44 72 chr6 37319664 37319785 -151959769 - Charlie2 DNA MER1_type -234 2628 2505 639 155 19 0 chr6 37319863 37319966 -151959588 - L1MC1 LINE L1 -6 6327 6223 1255 143 43 0 chr6 37319971 37320180 -151959374 - L1MC1 LINE L1 -196 6137 5920 471 134 109 17 chr6 37320181 37320300 -151959254 - Charlie2 DNA MER1_type -356 2506 2377 1978 265 78 87 chr6 37320300 37320404 -151959150 - Charlie2b DNA MER1_type -1753 1029 926 2112 113 3 0 chr6 37320404 37320706 -151958848 - AluSx SINE Alu -9 303 1 1978 265 78 87 chr6 37320706 37320726 -151958828 - Charlie2b DNA MER1_type -1856 926 907 545 244 207 9 chr6 37320726 37320939 -151958615 - MIR SINE MIR -3 259 5 1978 265 78 87 chr6 37320939 37321851 -151957703 - Charlie2b DNA MER1_type -1875 907 1 2066 119 0 14 chr6 37322181 37322476 -151957078 - AluSx SINE Alu -21 291 1 376 115 0 213 chr6 37322518 37322584 -151956970 - L1MB8 LINE L1 -3 6175 6097 2060 124 0 13 chr6 37322584 37322898 -151956656 + AluSx SINE Alu 1 310 -2 376 115 0 213 chr6 37322898 37322919 -151956635 - L1MB8 LINE L1 -81 6097 6117 2205 87 0 32 chr6 37322919 37323230 -151956324 + AluSx SINE Alu 1 301 -11 376 115 0 213 chr6 37323230 37323263 -151956291 - L1MB8 LINE L1 -60 6118 6080 356 329 79 35 chr6 37323263 37323491 -151956063 - HAL1 LINE L1 -1156 1351 1114 650 180 68 46 chr6 37323770 37323830 -151955724 - LTR47A LTR ERVL 0 452 395 2034 128 34 90 chr6 37323830 37323976 -151955578 + LTR47B LTR ERVL 1 154 -289 1666 171 0 10 chr6 37323976 37324286 -151955268 - AluJo SINE Alu -5 307 1 2034 128 34 90 chr6 37324286 37324608 -151954946 + LTR47B LTR ERVL 154 443 0 650 180 68 46 chr6 37324608 37324713 -151954841 - LTR47A LTR ERVL -57 395 288 4203 128 127 61 chr6 37324908 37326239 -151953315 - pTR5 LTR ERV1 0 2438 170 574 182 0 58 chr6 37326290 37326411 -151953143 - MER4B-int LTR ERV1 -677 6081 5968 2012 127 0 27 chr6 37326787 37327087 -151952467 - AluSx SINE Alu 0 312 21 277 149 0 0 chr6 37327164 37327211 -151952343 - MER4B-int LTR ERV1 -790 5968 5922 308 369 0 0 chr6 37327925 37328066 -151951488 - LTR47A-int LTR ERVL -2426 3259 3119 200 315 0 0 chr6 37328144 37328198 -151951356 - L3 LINE CR1 -957 620 567 570 193 126 0 chr6 37328351 37328470 -151951084 - AluJo SINE Alu -176 136 3 2570 71 7 0 chr6 37328494 37328802 -151950752 - AluSp SINE Alu -3 310 1 610 287 26 26 chr6 37329031 37329338 -151950216 - LTR47A-int LTR ERVL -2466 3581 3275 401 333 35 28 chr6 37329774 37330056 -151949498 - LTR47A-int LTR ERVL -2699 2644 2361 2220 100 0 0 chr6 37330060 37330377 -151949177 + AluSg SINE Alu 1 317 0 3482 152 2 3 chr6 37330453 37331153 -151948401 + L1PA13 LINE L1 4740 5438 -736 451 100 0 0 chr6 37331153 37331213 -151948341 + AluSp/q SINE Alu 232 291 -22 5538 77 3 15 chr6 37331213 37331483 -151948071 + L1PA13 LINE L1 5422 5694 -469 2257 101 3 3 chr6 37331483 37331781 -151947773 + AluSp SINE Alu 1 298 -15 5538 77 3 15 chr6 37331781 37332261 -151947293 + L1PA13 LINE L1 5694 6163 0 7561 52 3 30 chr6 37332537 37334003 -151945551 + SVA Other Other 154 1425 0 282 339 50 53 chr6 37334007 37334346 -151945208 - LTR47A-int LTR ERVL -4187 1860 1523 2464 84 3 0 chr6 37334778 37335077 -151944477 - AluSq SINE Alu -13 300 1 2214 116 23 0 chr6 37335078 37335380 -151944174 - AluSx SINE Alu -3 309 1 327 333 18 23 chr6 37336356 37336527 -151943027 - LTR47A-int LTR ERVL -5159 184 15 711 224 79 0 chr6 37336544 37336709 -151942845 - LTR47A LTR ERVL 0 452 275 1597 135 8 35 chr6 37336916 37337176 -151942378 + AluJo SINE Alu 1 253 -59 575 253 41 63 chr6 37340306 37340465 -151939089 - MIR SINE MIR -1 261 107 2341 62 56 0 chr6 37340465 37340753 -151938801 + AluSp SINE Alu 1 304 -9 575 253 41 63 chr6 37340753 37340814 -151938740 - MIR SINE MIR -155 107 46 341 254 82 37 chr6 37341067 37341201 -151938353 + MER5A DNA MER1_type 38 177 -12 396 0 0 0 chr6 37341489 37341533 -151938021 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 2217 123 0 0 chr6 37341535 37341837 -151937717 - AluSx SINE Alu -10 302 1 2171 132 3 0 chr6 37341837 37342141 -151937413 - AluSx SINE Alu -7 305 1 506 265 112 18 chr6 37342181 37342351 -151937203 - MIR SINE MIR -75 187 2 2149 164 40 26 chr6 37343852 37344278 -151935276 - MSTB1 LTR MaLR 0 432 1 501 308 39 0 chr6 37344919 37345075 -151934479 - MLT1J LTR MaLR -334 177 16 4277 86 19 81 chr6 37345085 37345246 -151934308 + L1MA1 LINE L1 5616 5785 -517 2389 107 0 0 chr6 37345246 37345545 -151934009 + AluSg SINE Alu 1 299 -11 2208 110 13 13 chr6 37345546 37345856 -151933698 + AluSg SINE Alu 1 310 0 4277 86 19 81 chr6 37345856 37346424 -151933130 + L1MA1 LINE L1 5784 6302 0 21 0 0 0 chr6 37346424 37346445 -151933109 + AT_rich Low_complexity Low_complexity 1 21 0 356 208 13 0 chr6 37346458 37346535 -151933019 - L1MEd LINE L1 -5284 835 758 551 176 46 28 chr6 37346640 37346748 -151932806 - FRAM SINE Alu -45 131 22 30 0 0 0 chr6 37346818 37346848 -151932706 + AT_rich Low_complexity Low_complexity 1 30 0 248 196 41 52 chr6 37346848 37346945 -151932609 - L1MA7 LINE L1 -3 6288 6193 312 248 45 98 chr6 37347027 37347160 -151932394 - L1MEd LINE L1 -5638 481 356 271 256 37 12 chr6 37347431 37347513 -151932041 + MIR SINE MIR 164 247 -15 324 300 40 20 chr6 37347714 37347814 -151931740 - L1MEd LINE L1 -5577 542 441 195 294 88 10 chr6 37348168 37348270 -151931284 + L2 LINE L2 3034 3143 -170 860 136 8 15 chr6 37348861 37348993 -151930561 + AluJb SINE Alu 3 133 -179 703 190 10 105 chr6 37349102 37349302 -151930252 + AluSg/x SINE Alu 118 298 -12 606 263 32 11 chr6 37349322 37349512 -151930042 + L1ME3 LINE L1 5961 6154 -8 2129 132 26 0 chr6 37349555 37349858 -151929696 - AluSx SINE Alu -1 311 1 3002 198 163 15 chr6 37349916 37350665 -151928889 + MER21B LTR ERV1 3 862 -1 637 136 32 0 chr6 37350682 37350807 -151928747 - L1MA7 LINE L1 -18 6273 6145 2291 101 0 3 chr6 37350893 37351189 -151928365 + AluSg SINE Alu 1 295 -15 546 344 20 25 chr6 37351194 37351438 -151928116 + MIR SINE MIR 15 257 -5 2335 92 3 0 chr6 37352225 37352525 -151927029 - AluSq SINE Alu 0 301 1 2129 202 60 84 chr6 37352641 37353323 -151926231 + LTR65 LTR ERV1 1 666 -3 481 141 0 0 chr6 37354625 37354696 -151924858 + MSTA LTR MaLR 1 71 -357 3148 56 86 0 chr6 37354696 37355105 -151924449 - MLT2A1 LTR ERVL 0 444 1 36490 67 9 4 chr6 37355105 37358719 -151920835 - HERVL-A1 LTR ERVL 0 5654 2009 2334 100 10 0 chr6 37358719 37359019 -151920535 - AluSg SINE Alu -5 305 3 36490 67 9 4 chr6 37359019 37360156 -151919398 - HERVL-A1 LTR ERVL -3645 2009 879 2503 90 3 0 chr6 37362903 37363215 -151916339 + AluSp SINE Alu 1 313 0 276 100 0 0 chr6 37363531 37363571 -151915983 + (TCCCC)n Simple_repeat Simple_repeat 1 40 0 665 161 12 12 chr6 37363590 37363751 -151915803 + CT-rich Low_complexity Low_complexity 3 163 0 315 281 137 29 chr6 37363878 37364017 -151915537 - L2 LINE L2 0 3313 3160 2064 116 39 0 chr6 37364242 37364549 -151915005 - AluSq SINE Alu 0 313 1 533 185 0 0 chr6 37365131 37365239 -151914315 + L1MB3 LINE L1 6076 6183 0 282 194 0 0 chr6 37365272 37365334 -151914220 + GA-rich Low_complexity Low_complexity 3 64 0 2418 98 0 3 chr6 37365543 37365850 -151913704 + AluSx SINE Alu 1 306 -6 26 30 0 0 chr6 37366140 37366173 -151913381 + AT_rich Low_complexity Low_complexity 1 33 0 1521 209 34 45 chr6 37366218 37366553 -151913001 - MLT1A2 LTR MaLR 0 374 42 1735 127 57 50 chr6 37366553 37366852 -151912702 + AluJo SINE Alu 1 301 -11 1521 209 34 45 chr6 37366852 37366894 -151912660 - MLT1A2 LTR MaLR -332 42 1 518 246 24 62 chr6 37367006 37367217 -151912337 + HAL1 LINE L1 2299 2501 -6 255 158 88 18 chr6 37367376 37367433 -151912121 + MER5A DNA MER1_type 1 61 -128 737 188 0 15 chr6 37367438 37367571 -151911983 - FLAM_C SINE Alu 0 133 3 2168 132 10 0 chr6 37367583 37367887 -151911667 - AluSg SINE Alu -3 307 1 503 273 106 0 chr6 37368191 37368323 -151911231 + L2 LINE L2 3122 3267 -5 242 325 50 50 chr6 37368330 37368610 -151910944 - L2 LINE L2 -970 2344 2065 264 299 103 0 chr6 37370390 37370487 -151909067 + MIR SINE MIR 66 172 -90 317 179 62 89 chr6 37371960 37372072 -151907482 - L1ME LINE L1 -5255 815 707 194 377 0 0 chr6 37379464 37379541 -151900013 - MIR3 SINE MIR -53 155 79 623 259 27 23 chr6 37379545 37379765 -151899789 - MIR SINE MIR -3 259 39 281 320 31 16 chr6 37379870 37379998 -151899556 - MIR SINE MIR -50 212 83 299 361 48 7 chr6 37380108 37380260 -151899294 + MIR SINE MIR 37 195 -67 184 317 77 10 chr6 37380420 37380524 -151899030 + L2 LINE L2 3045 3155 -158 2217 109 0 0 chr6 37380554 37380857 -151898697 - AluY SINE Alu -8 303 1 1236 210 11 32 chr6 37380860 37381165 -151898389 - AluJb SINE Alu 0 307 9 279 0 0 0 chr6 37381166 37381197 -151898357 + (GCCTG)n Simple_repeat Simple_repeat 4 34 0 438 181 53 0 chr6 37381197 37381291 -151898263 + L2 LINE L2 3215 3313 0 1853 157 23 0 chr6 37381960 37382265 -151897289 + AluSx SINE Alu 1 312 0 372 114 63 0 chr6 37382271 37382350 -151897204 + GA-rich Low_complexity Low_complexity 5 88 0 441 265 137 25 chr6 37382493 37382560 -151896994 + L1ME4a LINE L1 5895 5953 -168 685 155 95 0 chr6 37382560 37382676 -151896878 + FLAM_C SINE Alu 5 131 -2 441 265 137 25 chr6 37382676 37382812 -151896742 + L1ME4a LINE L1 5953 6121 0 262 389 8 24 chr6 37384347 37384473 -151895081 + MIR SINE MIR 123 246 -16 289 285 131 0 chr6 37384641 37384771 -151894783 + MIR SINE MIR 50 196 -66 2182 116 0 6 chr6 37384775 37385086 -151894468 + AluSx SINE Alu 3 311 -1 520 301 82 11 chr6 37385173 37385356 -151894198 - MER91A DNA MER1_type 0 196 1 390 202 90 11 chr6 37386543 37386632 -151892922 + L2 LINE L2 3203 3298 -15 1078 189 32 23 chr6 37387105 37387322 -151892232 + MER20 DNA MER1_type 1 219 0 252 306 102 36 chr6 37387519 37387715 -151891839 - MIR SINE MIR -34 228 20 286 352 83 0 chr6 37388030 37388175 -151891379 - MIR3 SINE MIR -20 188 32 379 227 45 83 chr6 37388601 37388733 -151890821 - MIR SINE MIR 0 262 136 * 384 199 108 17 chr6 37388719 37388866 -151890688 + MIR SINE MIR 101 262 0 247 228 13 38 chr6 37388846 37388925 -151890629 - MIR SINE MIR -97 165 89 * 980 284 116 14 chr6 37390373 37390567 -151888987 + L1M4 LINE L1 4585 4758 -1388 2362 70 0 7 chr6 37390567 37390866 -151888688 + AluSq SINE Alu 1 297 -16 980 284 116 14 chr6 37390866 37391179 -151888375 + L1M4 LINE L1 4758 5144 -1002 283 306 95 7 chr6 37392615 37392762 -151886792 + MIR SINE MIR 66 225 -37 1680 103 157 0 chr6 37392778 37393040 -151886514 + AluSq SINE Alu 1 303 0 507 73 0 0 chr6 37393040 37393108 -151886446 + (GGGA)n Simple_repeat Simple_repeat 4 71 0 399 206 43 0 chr6 37393495 37393587 -151885967 + MIR SINE MIR 49 144 -118 445 143 0 0 chr6 37393839 37393916 -151885638 + HY1 scRNA scRNA 36 112 0 374 260 70 50 chr6 37395473 37395616 -151883938 - MIR SINE MIR -63 145 45 337 262 0 23 chr6 37395890 37395986 -151883568 + MIR SINE MIR 69 162 -63 2681 101 11 0 chr6 37395986 37396363 -151883191 + LTR57 LTR ERVL 1 381 -30 2030 99 30 16 chr6 37396624 37396927 -151882627 + AluSx SINE Alu 1 307 -5 833 215 93 15 chr6 37397532 37397737 -151881817 + MLT1J LTR MaLR 2 222 -289 181 286 36 0 chr6 37397737 37397793 -151881761 + L2 LINE L2 2753 2810 -504 813 191 120 11 chr6 37397793 37397976 -151881578 + MER3 DNA MER1_type 1 203 -6 887 285 90 46 chr6 37398025 37398481 -151881073 + L2 LINE L2 2818 3293 -20 198 0 0 0 chr6 37398481 37398503 -151881051 + (A)n Simple_repeat Simple_repeat 1 22 0 384 289 144 37 chr6 37398524 37398794 -151880760 + MLT1J LTR MaLR 210 508 -3 197 276 0 92 chr6 37398833 37398852 -151880702 + MIR SINE MIR 126 145 -117 1738 157 0 47 chr6 37398852 37398999 -151880555 + AluJb SINE Alu 1 127 -185 2081 126 0 13 chr6 37398999 37399308 -151880246 + AluSx SINE Alu 1 305 -7 1738 157 0 47 chr6 37399308 37399479 -151880075 + AluJb SINE Alu 127 304 -8 197 276 0 92 chr6 37399479 37399546 -151880008 + MIR SINE MIR 145 204 -58 233 319 0 0 chr6 37400190 37400259 -151879295 + MIR3 SINE MIR 121 189 -19 29 28 0 0 chr6 37401550 37401586 -151877968 + AT_rich Low_complexity Low_complexity 1 36 0 321 209 351 14 chr6 37401654 37401802 -151877752 - MIR SINE MIR -64 198 1 340 236 56 84 chr6 37402490 37402668 -151876886 + MER5A DNA MER1_type 17 189 0 225 239 282 0 chr6 37405942 37406013 -151873541 - L2 LINE L2 -40 3273 3183 321 153 62 181 chr6 37406896 37407040 -151872514 - MER58 DNA MER1_type -4 2416 211 980 64 7 43 chr6 37407050 37407190 -151872364 + AluY SINE Alu 1 135 -176 1150 92 0 65 chr6 37407223 37407407 -151872147 + AluSg/x SINE Alu 120 291 -21 2197 84 3 0 chr6 37408169 37408478 -151871076 + AluSg SINE Alu 1 310 0 894 269 25 12 chr6 37409016 37409258 -151870296 - MIR SINE MIR -5 257 13 2248 73 7 0 chr6 37509649 37509921 -151769633 + AluSq SINE Alu 1 274 -39 2527 72 0 7 chr6 37510029 37510335 -151769219 - AluY SINE Alu -7 304 1 195 212 106 30 chr6 37510482 37510548 -151769006 + L2 LINE L2 3202 3272 0 394 253 152 86 chr6 37511049 37511306 -151768248 + L2 LINE L2 2175 2448 -866 436 332 99 36 chr6 37511804 37512196 -151767358 + L2 LINE L2 2458 2874 -440 1398 101 0 11 chr6 37512605 37512793 -151766761 + AluSg/x SINE Alu 99 284 -26 264 200 0 0 chr6 37512793 37512848 -151766706 + (TA)n Simple_repeat Simple_repeat 1 55 0 1632 163 7 24 chr6 37512888 37513176 -151766378 - AluJb SINE Alu -14 298 16 2397 47 0 20 chr6 37513932 37514229 -151765325 + AluY SINE Alu 1 291 -20 1643 75 133 61 chr6 37514241 37514519 -151765035 + AluSx SINE Alu 1 298 -14 1443 92 0 5 chr6 37514593 37514815 -151764739 - AluSq SINE Alu 0 327 107 339 25 0 0 chr6 37514820 37514860 -151764694 + (TA)n Simple_repeat Simple_repeat 1 40 0 3679 133 28 0 chr6 37514860 37515431 -151764123 - Harlequin LTR ERV1 -424 6472 5886 * 14715 83 13 3 chr6 37515425 37517441 -151762113 - Harlequin LTR ERV1 -1509 5387 3352 6743 43 40 9 chr6 37517440 37518413 -151761141 - Harlequin LTR ERV1 -4322 2574 1572 * 6197 70 35 16 chr6 37518406 37519282 -151760272 - Harlequin LTR ERV1 -6003 893 1 * 3971 52 23 0 chr6 37519282 37519761 -151759793 - LTR2B LTR ERV1 0 490 1 444 165 0 0 chr6 37519807 37519886 -151759668 + L1PA15 LINE L1 6051 6129 -36 2348 113 0 0 chr6 37519896 37520205 -151759349 + AluSx SINE Alu 1 309 -3 2211 86 31 7 chr6 37520403 37520695 -151758859 - AluSx SINE Alu -13 299 1 558 167 0 0 chr6 37520699 37520801 -151758753 - L1PA15 LINE L1 -13 6152 6051 190 244 67 0 chr6 37520839 37520884 -151758670 - L2 LINE L2 -4 3268 3221 2439 71 0 3 chr6 37521069 37521363 -151758191 - AluY SINE Alu -16 295 3 2149 123 3 26 chr6 37521376 37521685 -151757869 - AluY SINE Alu -9 302 1 1075 109 0 27 chr6 37521685 37521821 -151757733 - AluSq/x SINE Alu -179 134 1 2209 110 3 0 chr6 37521842 37522133 -151757421 - AluSp SINE Alu -19 294 3 77 17 0 26 chr6 37522136 37522204 -151757350 + AT_rich Low_complexity Low_complexity 1 69 -45 1286 78 6 0 chr6 37522204 37522371 -151757183 - L1PA8 LINE L1 -11 6161 5994 1900 144 35 3 chr6 37522373 37522657 -151756897 - AluSx SINE Alu -18 294 2 77 17 0 26 chr6 37522657 37522702 -151756852 + AT_rich Low_complexity Low_complexity 70 114 0 896 231 125 3 chr6 37522702 37522883 -151756671 - L1ME2 LINE L1 -2 6162 6004 2265 118 3 0 chr6 37522883 37523189 -151756365 - AluSx SINE Alu -5 307 1 896 231 125 3 chr6 37523189 37523318 -151756236 - L1ME2 LINE L1 -160 6004 5814 1184 124 26 26 chr6 37523327 37523520 -151756034 - AluSc SINE Alu -15 294 102 971 103 0 0 chr6 37523520 37523646 -151755908 + AluSp/q SINE Alu 166 291 -22 593 257 158 0 chr6 37523646 37523798 -151755756 + FRAM SINE Alu 1 40 0 2032 116 14 3 chr6 37523894 37524186 -151755368 - AluSx SINE Alu -14 298 4 2354 90 0 7 chr6 37524231 37524531 -151755023 - AluSg SINE Alu -12 298 1 2558 61 0 0 chr6 37524705 37525002 -151754552 + AluY SINE Alu 1 297 -14 1884 149 20 23 chr6 37525025 37525327 -151754227 - AluSx SINE Alu -11 301 1 2048 129 27 0 chr6 37525349 37525643 -151753911 - AluSq SINE Alu -11 302 1 2130 124 3 10 chr6 37525800 37526107 -151753447 - AluSx SINE Alu -7 305 1 1010 159 0 6 chr6 37526107 37526270 -151753284 - AluSg/x SINE Alu -6 306 145 534 178 8 85 chr6 37526721 37526796 -151752758 + MER5A DNA MER1_type 1 65 -124 2362 82 0 3 chr6 37526796 37527112 -151752442 + AluSq SINE Alu 1 313 0 534 178 8 85 chr6 37527112 37527154 -151752400 + MER5A DNA MER1_type 65 109 -80 443 335 46 57 chr6 37527401 37527682 -151751872 + L2 LINE L2 2994 3271 -1 24 53 0 0 chr6 37528191 37528229 -151751325 + AT_rich Low_complexity Low_complexity 1 38 0 4104 139 17 124 chr6 37528265 37529810 -151749744 + pTR5 LTR ERV1 744 2606 0 701 109 10 0 chr6 37529851 37529952 -151749602 - FRAM SINE Alu -34 142 41 1985 93 24 0 chr6 37530214 37530505 -151749049 - AluSx SINE Alu -14 298 1 2040 95 7 7 chr6 37531423 37531718 -151747836 - AluSx SINE Alu -17 295 1 1646 155 10 16 chr6 37531750 37532054 -151747500 + AluJb SINE Alu 1 302 -10 189 107 0 0 chr6 37532056 37532084 -151747470 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 2073 107 4 0 chr6 37532176 37532457 -151747097 + AluSq SINE Alu 14 295 -18 1214 224 28 50 chr6 37533162 37533484 -151746070 + MLT1A2 LTR MaLR 56 370 -4 471 192 98 62 chr6 37533562 37533755 -151745799 - L2 LINE L2 0 3313 3114 2066 108 0 0 chr6 37533772 37534049 -151745505 + AluSg SINE Alu 2 278 -32 195 42 0 0 chr6 37534058 37534082 -151745472 + (TA)n Simple_repeat Simple_repeat 2 25 0 1074 233 158 65 chr6 37534083 37534557 -151744997 - MLT1G1 LTR MaLR -58 495 15 382 265 70 32 chr6 37534564 37534602 -151744952 - L2 LINE L2 -163 3150 3115 2233 104 0 3 chr6 37534602 37534911 -151744643 + AluSc SINE Alu 1 308 -1 382 265 70 32 chr6 37534911 37535057 -151744497 - L2 LINE L2 -198 3115 2959 3883 130 18 12 chr6 37536428 37537026 -151742528 + LTR43 LTR ERV1 1 602 0 39815 10 6 12 chr6 37537026 37537368 -151742186 + LTR43-int LTR ERV1 1 344 -4454 2228 99 0 3 chr6 37537368 37537672 -151741882 - AluSg SINE Alu -6 304 2 39815 10 6 12 chr6 37537672 37538313 -151741241 + LTR43-int LTR ERV1 344 987 -3811 2115 98 7 0 chr6 37538313 37538599 -151740955 + AluSp SINE Alu 5 292 -21 39815 10 6 12 chr6 37538599 37539214 -151740340 + LTR43-int LTR ERV1 987 1604 -3194 2127 110 0 7 chr6 37539214 37539514 -151740040 - AluSx SINE Alu -14 298 1 39815 10 6 12 chr6 37539514 37539801 -151739753 + LTR43-int LTR ERV1 1604 1891 -2907 2349 85 0 0 chr6 37539801 37540107 -151739447 + AluSg SINE Alu 5 310 0 39815 10 6 12 chr6 37540107 37540248 -151739306 + LTR43-int LTR ERV1 1891 2031 -2767 2239 83 0 0 chr6 37540248 37540537 -151739017 + AluSg SINE Alu 1 289 -21 39815 10 6 12 chr6 37540537 37540602 -151738952 + LTR43-int LTR ERV1 2031 2095 -2703 2004 108 4 0 chr6 37540602 37540880 -151738674 + AluSx SINE Alu 34 312 0 39815 10 6 12 chr6 37540880 37542436 -151737118 + LTR43-int LTR ERV1 2095 3659 -1139 199 232 58 43 chr6 37542436 37542505 -151737049 + L2 LINE L2 1720 1789 -1525 39815 10 6 12 chr6 37542505 37542717 -151736837 + LTR43-int LTR ERV1 3659 3871 -927 2295 89 7 0 chr6 37542717 37543019 -151736535 + AluSc SINE Alu 1 304 -5 39815 10 6 12 chr6 37543019 37543643 -151735911 + LTR43-int LTR ERV1 3871 4531 -267 1360 110 9 37 chr6 37543643 37543861 -151735693 + AluSg/x SINE Alu 85 296 -16 2621 0 0 0 chr6 37543862 37544139 -151735415 + LTR43-int LTR ERV1 4522 4798 0 4283 102 3 26 chr6 37544139 37544755 -151734799 + LTR43 LTR ERV1 1 602 0 812 154 21 14 chr6 37544784 37544927 -151734627 + L1MC3 LINE L1 6698 6841 -944 1592 90 0 5 chr6 37544931 37545142 -151734412 + AluSg SINE Alu 3 212 -98 926 176 47 59 chr6 37545149 37545278 -151734276 + L1M4 LINE L1 4531 4657 -1489 2345 69 26 0 chr6 37545278 37545582 -151733972 + AluSq SINE Alu 1 312 -1 926 176 47 59 chr6 37545582 37545708 -151733846 + L1M4 LINE L1 4657 4783 -1363 * 3268 138 65 95 chr6 37545698 37545860 -151733694 + L1MA8 LINE L1 5552 5717 -574 585 250 8 0 chr6 37545860 37545992 -151733562 - FLAM_A SINE Alu 0 133 1 3268 138 65 95 chr6 37545992 37546331 -151733223 + L1MA8 LINE L1 5717 6065 -226 2023 98 9 35 chr6 37546331 37546646 -151732908 + AluSx SINE Alu 1 307 -5 1646 142 41 8 chr6 37546651 37546918 -151732636 - AluSx SINE Alu -36 276 1 3268 138 65 95 chr6 37546918 37547169 -151732385 + L1MA8 LINE L1 6069 6288 -3 827 157 79 6 chr6 37547181 37547359 -151732195 + L1M4 LINE L1 4762 4952 -1194 904 223 44 23 chr6 37547776 37548082 -151731472 - MSTD LTR MaLR -8 388 16 4354 87 2 0 chr6 37548082 37548635 -151730919 + MER41A LTR ERV1 1 554 0 2064 95 30 3 chr6 37548666 37548961 -151730593 - AluSp SINE Alu -10 303 1 2516 124 136 69 chr6 37549261 37549768 -151729786 + LTR10B LTR ERV1 1 541 -6 2054 129 0 3 chr6 37549794 37550105 -151729449 - AluSg SINE Alu 0 310 1 1913 91 94 0 chr6 37550107 37550383 -151729171 - AluSq SINE Alu -11 302 1 1313 183 91 112 chr6 37550420 37550895 -151728659 - MER4C LTR ERV1 0 465 1 923 229 10 0 chr6 37550899 37551100 -151728454 - MER4C-int LTR ERV1 -1 6597 6395 266 246 33 57 chr6 37551129 37551251 -151728303 - MER4C-int LTR ERV1 -170 6428 6310 386 228 150 0 chr6 37551255 37551382 -151728172 - MER4C LTR ERV1 -205 260 158 5630 116 45 42 chr6 37551432 37551820 -151727734 - LTR49-int LTR ERV1 -520 5811 5426 2046 102 7 3 chr6 37551820 37552114 -151727440 - AluSp SINE Alu -18 295 1 5630 116 45 42 chr6 37552114 37552570 -151726984 - LTR49-int LTR ERV1 -905 5426 4961 2205 102 0 0 chr6 37552570 37552873 -151726681 + AluSg SINE Alu 1 303 -7 5630 116 45 42 chr6 37552873 37553064 -151726490 - LTR49-int LTR ERV1 -1370 4961 4772 1983 104 7 7 chr6 37553065 37553372 -151726182 + AluSg SINE Alu 1 307 0 820 184 18 64 chr6 37553374 37553592 -151725962 - LTR49-int LTR ERV1 -1969 2911 2704 1727 100 0 4 chr6 37553607 37553846 -151725708 - AluSc SINE Alu -71 238 1 1068 216 85 97 chr6 37553846 37554406 -151725148 - LTR49-int LTR ERV1 -2614 2266 1700 2356 93 0 0 chr6 37554406 37554716 -151724838 + AluSg SINE Alu 1 310 0 1068 216 85 97 chr6 37554716 37555005 -151724549 - LTR49-int LTR ERV1 -3180 1700 1001 2168 74 25 3 chr6 37555083 37555367 -151724187 - AluSc SINE Alu -19 290 1 608 148 87 54 chr6 37555379 37555528 -151724026 - LTR49-int LTR ERV1 -5184 1147 994 251 135 115 19 chr6 37555538 37555590 -151723964 - LTR49 LTR ERV1 -276 319 263 3355 78 41 0 chr6 37556208 37556643 -151722911 + MLT2A2 LTR ERVL 1 453 0 2100 104 3 0 chr6 37556830 37557128 -151722426 - AluSp SINE Alu -14 299 1 290 348 0 0 chr6 37557991 37558080 -151721474 - MER82 DNA MER2_type -61 592 504 2280 74 14 0 chr6 37558421 37558717 -151720837 - AluY SINE Alu -11 300 1 8657 219 48 25 chr6 37558717 37559564 -151719990 - HERV3 LTR ERV1 -1084 7342 6516 2443 43 0 13 chr6 37559564 37559866 -151719688 - AluY SINE Alu -13 298 1 8657 219 48 25 chr6 37559866 37560846 -151718708 - HERV3 LTR ERV1 -1910 6516 5469 1123 178 12 89 chr6 37560847 37560968 -151718586 - LTR61 LTR ERV1 -329 266 174 2219 90 0 0 chr6 37560968 37561257 -151718297 + AluY SINE Alu 1 289 -22 1123 178 12 89 chr6 37561257 37561393 -151718161 - LTR61 LTR ERV1 -421 174 29 183 42 0 0 chr6 37561393 37561417 -151718137 + (TTA)n Simple_repeat Simple_repeat 1 24 0 983 313 44 21 chr6 37561548 37561982 -151717572 + LTR33 LTR ERVL 10 453 -68 2154 93 3 0 chr6 37561990 37562279 -151717275 + AluSp SINE Alu 7 296 -17 228 91 0 0 chr6 37562280 37562313 -151717241 + LTR33 LTR ERVL 485 517 -4 2112 99 17 3 chr6 37563006 37563308 -151716246 - AluSq SINE Alu -7 306 1 537 130 98 0 chr6 37563701 37563824 -151715730 + L1MB7 LINE L1 6037 6171 -13 517 267 144 25 chr6 37563837 37564278 -151715276 + L1ME3A LINE L1 5434 5937 -233 557 234 22 54 chr6 37564745 37564929 -151714625 + MER3 DNA MER1_type 4 181 -28 703 132 9 9 chr6 37564946 37565060 -151714494 - MER9 LTR ERVK 0 511 398 3669 98 8 6 chr6 37565062 37565575 -151713979 - HERVK9 LTR ERVK -821 5095 4582 1833 70 4 0 chr6 37565574 37565804 -151713750 - HERVK9 LTR ERVK -1975 3941 3711 * 20385 80 4 10 chr6 37565805 37568550 -151711004 - HERVK9 LTR ERVK -3131 2785 1 3685 113 0 6 chr6 37568550 37569064 -151710490 - MER9 LTR ERVK 0 511 1 402 74 0 0 chr6 37569373 37569427 -151710127 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 1633 108 0 0 chr6 37569429 37569661 -151709893 - AluSg/x SINE Alu -15 297 66 2068 98 37 0 chr6 37569887 37570183 -151709371 + AluSx SINE Alu 1 307 -5 890 174 6 0 chr6 37570245 37570406 -151709148 - FRAM SINE Alu -15 161 1 23 0 0 0 chr6 37570736 37570759 -151708795 + AT_rich Low_complexity Low_complexity 1 23 0 1972 144 7 0 chr6 37572494 37572824 -151706730 + AluSx SINE Alu 1 312 0 213 313 89 16 chr6 37572876 37573035 -151706519 + MIR SINE MIR 21 201 -61 1895 144 0 7 chr6 37573110 37573408 -151706146 - AluSq SINE Alu -17 296 1 2238 154 21 5 chr6 37573821 37574205 -151705349 - MLT1B LTR MaLR 0 390 1 720 64 0 0 chr6 37574230 37574324 -151705230 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 2157 120 0 0 chr6 37574336 37574644 -151704910 - AluSx SINE Alu -4 308 1 598 286 40 0 chr6 37575684 37575859 -151703695 + MLT1G1 LTR MaLR 11 192 -403 1652 186 73 13 chr6 37575984 37576463 -151703091 - L1M4 LINE L1 -3828 3020 2513 1362 243 48 6 chr6 37576469 37576802 -151702752 - MLT2C2 LTR ERVL -116 348 2 3703 211 18 38 chr6 37576805 37577237 -151702317 - ERVL-C2 LTR ERVL -7 5757 5350 1466 190 7 18 chr6 37577237 37577550 -151702004 - AluJb SINE Alu 0 316 7 3703 211 18 38 chr6 37577550 37578002 -151701552 - ERVL-C2 LTR ERVL -414 5350 4890 14322 194 14 17 chr6 37578004 37581776 -151697778 + L1PA12 LINE L1 1328 5902 -1682 700 268 126 0 chr6 37581775 37581965 -151697589 - L1M4 LINE L1 -5705 1144 931 * 443 172 54 0 chr6 37582157 37582250 -151697304 + L1MA7 LINE L1 6188 6285 -6 400 327 65 5 chr6 37582263 37582462 -151697092 - L1MEc LINE L1 -4763 1633 1423 1003 255 19 15 chr6 37582621 37582884 -151696670 + MLT2D LTR ERVL 1 264 -150 1416 224 6 54 chr6 37582886 37583235 -151696319 + MER21B-int LTR ERV1 2341 2672 -1519 765 168 22 0 chr6 37583235 37583372 -151696182 + MSTA LTR MaLR 1 140 -288 435 200 0 0 chr6 37583375 37583450 -151696104 + MER21B-int LTR ERV1 2665 2739 -1452 373 287 70 0 chr6 37583456 37583585 -151695969 + FRAM SINE Alu 16 153 -13 1811 248 50 48 chr6 37583585 37583916 -151695638 + MER21B-int LTR ERV1 2728 3062 -1129 4746 164 13 3 chr6 37583916 37584691 -151694863 - LTR39 LTR ERV1 0 783 1 1811 248 50 48 chr6 37584691 37584943 -151694611 + MER21B-int LTR ERV1 3062 3312 -879 2455 204 39 16 chr6 37585042 37585606 -151693948 + MER21B-int LTR ERV1 3463 4039 -152 41510 71 4 7 chr6 37585621 37585995 -151693559 - L1PA6 LINE L1 -4 6150 5777 2388 88 3 3 chr6 37585995 37586301 -151693253 - AluY SINE Alu -5 306 1 41510 71 4 7 chr6 37586301 37592079 -151687475 - L1PA6 LINE L1 -377 5777 11 1569 217 3 3 chr6 37592182 37592477 -151687077 + AluJo SINE Alu 1 295 -17 1768 247 4 43 chr6 37592535 37593000 -151686554 + MER21B LTR ERV1 19 465 -398 617 270 133 19 chr6 37593001 37593320 -151686234 + MSTD LTR MaLR 1 348 -17 1895 146 8 62 chr6 37593331 37593687 -151685867 + MER1B DNA MER1_type 1 337 0 1503 174 16 86 chr6 37593723 37594314 -151685240 + MER4A LTR ERV1 1 465 0 873 256 51 33 chr6 37594327 37594600 -151684954 + MER21B LTR ERV1 505 782 -81 4777 60 12 14 chr6 37594631 37595666 -151683888 - MER11A LTR ERVK 0 1266 1 3216 127 20 49 chr6 37596294 37596924 -151682630 - MER4B LTR ERV1 0 779 1 358 156 89 44 chr6 37597048 37597138 -151682416 - LTR19C LTR ERV1 0 779 686 1616 116 10 93 chr6 37597139 37597440 -151682114 - LTR9 LTR ERV1 -336 276 1 458 286 21 84 chr6 37597445 37597732 -151681822 + LTR67 LTR ERVL 185 453 -104 267 266 64 11 chr6 37598221 37598315 -151681239 + MER5A DNA MER1_type 4 102 -87 1786 252 100 26 chr6 37598418 37599483 -151680071 + L2 LINE L2 2107 3252 -61 950 316 46 17 chr6 37604949 37605540 -151674014 - L1MEc LINE L1 -4155 2241 1634 261 0 0 0 chr6 37605564 37605593 -151673961 + (T)n Simple_repeat Simple_repeat 1 29 0 222 271 31 21 chr6 37605749 37605845 -151673709 + C-rich Low_complexity Low_complexity 4 100 0 1930 243 60 39 chr6 37605869 37606532 -151673022 - L1ME1 LINE L1 -112 6054 5378 255 305 31 31 chr6 37606553 37606681 -151672873 - L1ME1 LINE L1 -1843 4303 4176 750 157 36 29 chr6 37606689 37606829 -151672725 - FLAM_C SINE Alu 0 143 3 926 62 16 0 chr6 37606896 37607025 -151672529 + L1PA8A LINE L1 5267 5397 -734 242 301 6 54 chr6 37608286 37608452 -151671102 + A-rich Low_complexity Low_complexity 1 158 0 5240 97 21 3 chr6 37610873 37611602 -151667952 + L1PA8A LINE L1 5387 6128 -3 872 87 10 1 chr6 37611610 37611739 -151667815 + L1PA13 LINE L1 5655 5790 -373 2873 70 0 41 chr6 37613032 37613447 -151666107 + L1PA13 LINE L1 5766 6163 0 999 291 54 42 chr6 37613649 37614168 -151665386 + L1MEc LINE L1 1516 2040 -4356 342 92 46 15 chr6 37614181 37614246 -151665308 + L1P LINE L1 3148 3214 -2932 212 57 0 29 chr6 37614246 37614281 -151665273 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1403 201 14 27 chr6 37614570 37614863 -151664691 + AluJo SINE Alu 1 289 -23 1833 54 13 5 chr6 37615167 37615391 -151664163 - AluY SINE Alu -85 226 1 948 212 45 74 chr6 37616132 37616551 -151663003 - L1MC5 LINE L1 -470 7491 7085 697 271 174 12 chr6 37616596 37616924 -151662630 + L1ME3A LINE L1 5615 5995 -175 394 285 53 58 chr6 37620642 37621018 -151658536 - L1ME LINE L1 -4863 1679 1306 297 343 17 42 chr6 37621004 37621240 -151658314 - L1ME LINE L1 -5589 1045 816 * 288 200 62 0 chr6 37621652 37621732 -151657822 - L1ME LINE L1 -5937 697 613 1757 177 0 7 chr6 37621897 37622191 -151657363 + AluJb SINE Alu 1 292 -20 426 20 0 0 chr6 37622825 37622876 -151656678 + (TG)n Simple_repeat Simple_repeat 1 51 0 593 288 82 29 chr6 37622940 37623265 -151656289 + MERVL LTR ERVL 3330 3633 -2021 450 326 34 17 chr6 37623305 37623538 -151656016 + MERVL LTR ERVL 3739 3975 -1789 422 299 112 74 chr6 37623895 37624531 -151655023 + L1MEd LINE L1 431 1090 -5029 386 293 30 96 chr6 37625225 37625495 -151654059 + MIR SINE MIR 11 262 0 650 216 40 61 chr6 37626920 37627198 -151652356 + L1MB8 LINE L1 4140 4411 -1735 1969 204 18 26 chr6 37627200 37627691 -151651863 + L1MB8 LINE L1 4806 5292 -854 264 57 19 38 chr6 37627691 37627744 -151651810 + (TAA)n Simple_repeat Simple_repeat 3 54 0 3195 211 62 17 chr6 37627752 37628520 -151651034 + L1MB8 LINE L1 5360 6162 -16 2723 201 8 4 chr6 37629386 37629884 -151649670 + MLT1D LTR MaLR 1 500 -5 321 261 11 23 chr6 37630178 37630266 -151649288 - MLT2E LTR ERVL -510 118 32 4415 74 2 2 chr6 37630537 37631079 -151648475 - L1PA8 LINE L1 -2 6170 5629 1036 365 50 23 chr6 37632251 37633443 -151646111 + MERVL LTR ERVL 3792 5068 -696 22 35 0 0 chr6 37633566 37633595 -151645959 + AT_rich Low_complexity Low_complexity 1 29 0 4854 98 29 26 chr6 37633660 37634332 -151645222 - L1PB2 LINE L1 0 6151 5475 2207 112 0 0 chr6 37634332 37634626 -151644928 - AluY SINE Alu -17 294 1 4854 98 29 26 chr6 37634626 37634670 -151644884 - L1PB2 LINE L1 -676 5475 5433 249 236 36 0 chr6 37634677 37634732 -151644822 - L2 LINE L2 -3 3310 3254 199 366 72 27 chr6 37634807 37635279 -151644275 - L2 LINE L2 -222 3050 2554 1574 211 162 41 chr6 37636177 37636665 -151642889 + MLT1E LTR MaLR 43 589 -4 632 250 118 5 chr6 37637345 37637549 -151642005 + MIR SINE MIR 3 229 -33 229 145 0 58 chr6 37637765 37637834 -151641720 + (CATA)n Simple_repeat Simple_repeat 4 68 0 231 330 0 11 chr6 37637835 37637923 -151641631 + (CA)n Simple_repeat Simple_repeat 2 88 0 2801 29 0 0 chr6 37638414 37638725 -151640829 + AluY SINE Alu 1 311 0 327 96 0 0 chr6 37639090 37639142 -151640412 + (GGA)n Simple_repeat Simple_repeat 1 52 0 353 313 173 0 chr6 37640946 37641154 -151638400 + MIR SINE MIR 8 251 -11 266 328 64 45 chr6 37642208 37642381 -151637173 + L1M4 LINE L1 4097 4265 -1881 342 45 0 0 chr6 37642381 37642425 -151637129 + (TA)n Simple_repeat Simple_repeat 2 45 0 2175 36 0 16 chr6 37642425 37642678 -151636876 - AluY SINE Alu -6 305 57 266 328 64 45 chr6 37642678 37643220 -151636334 + L1M4 LINE L1 4264 4827 -1319 280 298 133 26 chr6 37643500 37643651 -151635903 - ERVL LTR ERVL -3801 1963 1797 223 269 121 51 chr6 37643926 37644088 -151635466 + MER5A DNA MER1_type 2 189 0 488 288 17 28 chr6 37644099 37644276 -151635278 - MER5B DNA MER1_type -3 175 1 338 260 54 39 chr6 37644439 37644643 -151634911 - LTR33 LTR ERVL -312 209 3 249 234 16 0 chr6 37644646 37644710 -151634844 + L1ME3 LINE L1 4093 4157 -1989 298 272 151 20 chr6 37644716 37645021 -151634533 + L1ME3 LINE L1 4259 4603 -1543 566 123 108 15 chr6 37645158 37645288 -151634266 + L1MB8 LINE L1 6028 6169 -9 628 313 88 25 chr6 37645296 37645775 -151633779 + L1ME3 LINE L1 5429 5937 -225 632 224 12 53 chr6 37646254 37646424 -151633130 + MER3 DNA MER1_type 19 181 -28 449 254 8 17 chr6 37647123 37647241 -151632313 - MIR SINE MIR -18 244 128 876 128 43 7 chr6 37647599 37647740 -151631814 - AluJo SINE Alu -45 267 122 2571 129 26 0 chr6 37649377 37649757 -151629797 - MLT1B LTR MaLR 0 390 1 618 221 47 47 chr6 37650801 37650973 -151628581 + MLT1G1 LTR MaLR 11 182 -413 1443 172 109 62 chr6 37651107 37651189 -151628365 - L1M4 LINE L1 -3828 2554 2477 2143 117 0 7 chr6 37651189 37651487 -151628067 - AluSg SINE Alu -14 296 1 1443 172 109 62 chr6 37651487 37651895 -151627659 - L1M4 LINE L1 -3905 2477 2043 1308 253 8 4 chr6 37651896 37652235 -151627319 - MLT2C1 LTR ERVL -99 298 1 3006 205 34 57 chr6 37652242 37652657 -151626897 - ERVL-C1 LTR ERVL -16 5748 5357 1603 179 11 21 chr6 37652657 37652976 -151626578 - AluJb SINE Alu 0 316 1 3006 205 34 57 chr6 37652976 37653334 -151626220 - ERVL-C1 LTR ERVL -407 5357 4992 1812 178 49 40 chr6 37653334 37653802 -151625752 + L1P3 LINE L1 1328 2505 -5079 * 9397 204 7 9 chr6 37653801 37655712 -151623842 + L1P3 LINE L1 2733 4638 -2946 2208 100 10 3 chr6 37655713 37656012 -151623542 - AluSq SINE Alu -12 301 1 6365 96 34 8 chr6 37656013 37656141 -151623413 + L1PA13 LINE L1 4603 4726 -1437 2120 128 0 7 chr6 37656141 37656438 -151623116 - AluSg SINE Alu -13 297 3 6365 96 34 8 chr6 37656438 37657837 -151621717 + L1PA13 LINE L1 4726 6159 -4 525 230 18 0 chr6 37657837 37657950 -151621604 - ERVL LTR ERVL -3545 2219 2105 895 189 27 0 chr6 37657971 37658156 -151621398 - L1 LINE L1 -2688 4160 3971 1972 181 41 102 chr6 37658169 37658721 -151620833 - LTR10E LTR ERV1 -42 591 79 1948 100 3 63 chr6 37658721 37659050 -151620504 - AluSg SINE Alu 0 311 1 1972 181 41 102 chr6 37659050 37659125 -151620429 - LTR10E LTR ERV1 -554 79 1 13168 266 70 72 chr6 37659128 37659688 -151619866 - HERVI LTR ERV1 -1 7784 7224 5488 73 15 19 chr6 37659688 37660442 -151619112 + SVA Other Other 635 1385 -1 13168 266 70 72 chr6 37660442 37660501 -151619053 - HERVI LTR ERV1 -561 7224 7166 2103 101 47 0 chr6 37660501 37660779 -151618775 - AluSg SINE Alu -19 291 1 13168 266 70 72 chr6 37660779 37667827 -151611727 - HERVI LTR ERV1 -619 7166 26 2039 173 51 103 chr6 37667868 37668480 -151611074 - LTR10E LTR ERV1 -42 591 12 8408 214 36 21 chr6 37668490 37669638 -151609916 - L1 LINE L1 -2873 3975 2845 3980 98 2 4 chr6 37669638 37670150 -151609404 - MER9 LTR ERVK 0 511 1 8408 214 36 21 chr6 37670150 37670596 -151608958 - L1 LINE L1 -4003 2845 2407 2186 113 0 31 chr6 37670596 37670915 -151608639 + AluSc SINE Alu 1 309 0 8408 214 36 21 chr6 37670915 37672338 -151607216 - L1 LINE L1 -4441 2407 913 2038 128 3 3 chr6 37672471 37672792 -151606762 - AluSg SINE Alu 0 321 1 359 186 44 62 chr6 37672810 37672923 -151606631 + L1MA7 LINE L1 6178 6288 -3 245 283 141 16 chr6 37672939 37673123 -151606431 - L1M4c LINE L1 -4631 1751 1519 7782 48 2 0 chr6 37673316 37674448 -151605106 + L1PA5 LINE L1 5020 6153 -1 892 282 8 8 chr6 37674448 37674700 -151604854 + MLT2D LTR ERVL 14 265 -149 1381 223 6 57 chr6 37674701 37675051 -151604503 + MER21B-int LTR ERV1 2341 2672 -1519 624 218 14 27 chr6 37675051 37675198 -151604356 + MSTA LTR MaLR 1 145 -283 348 260 0 0 chr6 37675198 37675271 -151604283 + MER21B-int LTR ERV1 2667 2739 -1452 486 266 63 0 chr6 37675277 37675420 -151604134 + FRAM SINE Alu 16 167 -9 1911 261 37 37 chr6 37675430 37675742 -151603812 + MER21B-int LTR ERV1 2742 3056 -1135 4558 165 23 20 chr6 37675742 37676523 -151603031 - LTR39 LTR ERV1 0 783 1 1911 261 37 37 chr6 37676523 37676782 -151602772 + MER21B-int LTR ERV1 3055 3313 -878 2613 187 41 19 chr6 37676883 37677449 -151602105 + MER21B-int LTR ERV1 3463 4040 -151 1600 215 3 0 chr6 37677546 37677844 -151601710 + AluJo SINE Alu 1 299 -13 1756 246 11 45 chr6 37677895 37678367 -151601187 + MER21B LTR ERV1 10 465 -398 643 231 83 30 chr6 37678368 37678686 -151600868 + MSTD LTR MaLR 1 348 -17 1929 143 9 57 chr6 37678697 37679047 -151600507 + MER1B DNA MER1_type 1 333 -6 1443 191 19 78 chr6 37679082 37679665 -151599889 + MER4A LTR ERV1 1 465 0 828 268 52 29 chr6 37679678 37679950 -151599604 + MER21B LTR ERV1 505 782 -81 23 0 0 0 chr6 37680211 37680234 -151599320 + AT_rich Low_complexity Low_complexity 1 23 0 3103 142 22 54 chr6 37680618 37681211 -151598343 - MER4B LTR ERV1 -36 574 1 570 279 50 81 chr6 37681240 37681338 -151598216 + LTR67 LTR ERVL 82 182 -375 3001 157 37 55 chr6 37681338 37681961 -151597593 - LTR9 LTR ERV1 0 612 1 570 279 50 81 chr6 37681961 37682246 -151597308 + LTR67 LTR ERVL 182 453 -104 243 325 78 26 chr6 37682579 37682733 -151596821 + MER5B DNA MER1_type 1 162 -16 315 261 68 0 chr6 37682757 37682845 -151596709 + MER5A DNA MER1_type 9 102 -87 181 169 92 62 chr6 37682887 37682952 -151596602 - L3 LINE CR1 -460 1117 1051 * 2266 261 88 20 chr6 37682925 37684083 -151595471 + L2 LINE L2 2074 3311 -2 238 323 115 15 chr6 37684095 37684225 -151595329 - L3 LINE CR1 -550 1027 885 215 182 0 36 chr6 37687354 37687409 -151592145 + (CCCCG)n Simple_repeat Simple_repeat 1 53 0 884 312 64 17 chr6 37689421 37690001 -151589553 - L1MEc LINE L1 -4155 2241 1635 331 308 45 68 chr6 37690024 37690245 -151589309 - L1ME1 LINE L1 0 6166 5951 1694 266 59 38 chr6 37690310 37690973 -151588581 - L1ME1 LINE L1 -112 6448 5772 238 282 70 28 chr6 37690994 37691136 -151588418 - L1ME1 LINE L1 -1843 4697 4550 762 171 49 0 chr6 37691144 37691267 -151588287 - FLAM_C SINE Alu -4 129 1 5915 90 31 1 chr6 37691363 37692200 -151587354 + L1PA8A LINE L1 5267 6128 -3 3468 76 0 34 chr6 37692228 37692726 -151586828 + L1PA13 LINE L1 5683 6163 0 328 247 47 35 chr6 37692736 37692906 -151586648 - L1ME1 LINE L1 -3898 2642 2471 883 301 52 35 chr6 37692919 37693441 -151586113 + L1MEc LINE L1 1515 2045 -4351 384 162 0 0 chr6 37693450 37693518 -151586036 + L1P LINE L1 3148 3215 -2931 1270 224 6 32 chr6 37693805 37694117 -151585437 + AluJo SINE Alu 1 304 -8 21 0 0 0 chr6 37694143 37694164 -151585390 + AT_rich Low_complexity Low_complexity 1 21 0 255 31 0 0 chr6 37694335 37694367 -151585187 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 436 246 160 37 chr6 37694402 37694589 -151584965 - HAL1 LINE L1 -2 2505 2296 664 247 185 15 chr6 37694603 37694992 -151584562 - HAL1 LINE L1 -17 2490 2036 600 213 8 8 chr6 37695088 37695210 -151584344 - FLAM_A SINE Alu -11 122 1 986 217 49 4 chr6 37695265 37695509 -151584045 - HAL1 LINE L1 -723 1784 1530 1514 166 53 25 chr6 37695512 37695795 -151583759 - AluJb SINE Alu -21 291 1 402 250 164 0 chr6 37695875 37696003 -151583551 + L2 LINE L2 2499 2647 -667 1854 116 14 3 chr6 37696087 37696371 -151583183 + AluSq SINE Alu 11 297 -16 389 340 58 0 chr6 37696762 37696950 -151582604 - L1ME LINE L1 -398 5772 5574 805 236 39 63 chr6 37698783 37699194 -151580360 - L1MC5 LINE L1 -476 7485 7085 440 263 130 31 chr6 37699221 37699725 -151579829 + L1ME3A LINE L1 5596 6161 -9 799 268 101 22 chr6 37700011 37700377 -151579177 + ERVL LTR ERVL 3880 4274 -1490 4457 196 16 46 chr6 37700686 37701018 -151578536 + L1P LINE L1 3656 3997 -2149 807 112 0 0 chr6 37701018 37701125 -151578429 + U6 snRNA snRNA 1 107 0 4457 196 16 46 chr6 37701125 37701826 -151577728 + L1P LINE L1 3997 4657 -1489 29 0 0 0 chr6 37701842 37701871 -151577683 + AT_rich Low_complexity Low_complexity 1 29 0 31 82 0 0 chr6 37702533 37702606 -151576948 + AT_rich Low_complexity Low_complexity 1 73 0 1303 140 19 1 chr6 37702606 37702886 -151576668 + L1P LINE L1 4643 4938 -1208 * 3548 241 40 25 chr6 37702868 37704004 -151575550 + L1M4c LINE L1 742 1895 -4489 2173 183 19 19 chr6 37704004 37704436 -151575118 + L1MB5 LINE L1 5743 6174 0 7703 64 32 4 chr6 37704557 37705537 -151574017 - LTR13 LTR ERVK 0 1007 1 203 261 0 0 chr6 37706153 37706199 -151573355 + (CATA)n Simple_repeat Simple_repeat 2 47 0 960 196 0 0 chr6 37706417 37706575 -151572979 - FAM SINE Alu -17 158 1 21 57 0 0 chr6 37706605 37706640 -151572914 + AT_rich Low_complexity Low_complexity 1 35 0 506 307 109 51 chr6 37706795 37707209 -151572345 - L1ME4a LINE L1 -130 5991 5554 1828 277 17 8 chr6 37707211 37708000 -151571554 - ERVL-C1 LTR ERVL -4812 952 28 317 254 68 34 chr6 37708391 37708509 -151571045 + MER58B DNA MER1_type 220 341 0 487 172 40 30 chr6 37709078 37709177 -151570377 + MIR SINE MIR 40 139 -123 287 67 44 0 chr6 37710503 37710548 -151569006 + CT-rich Low_complexity Low_complexity 2 48 0 31 44 0 0 chr6 37711902 37711947 -151567607 + AT_rich Low_complexity Low_complexity 1 45 0 259 125 0 0 chr6 37712429 37712469 -151567085 - ERVL-C1 LTR ERVL -5614 40 1 1267 219 52 7 chr6 37712471 37712509 -151567045 - MLT2C1 LTR ERVL -2 395 360 414 0 0 0 chr6 37712509 37712555 -151566999 + (TG)n Simple_repeat Simple_repeat 2 47 0 1267 219 52 7 chr6 37712555 37712785 -151566769 - MLT2C1 LTR ERVL -37 360 115 2275 213 73 28 chr6 37713703 37714281 -151565273 - MLT1E3 LTR MaLR 0 624 21 573 269 7 14 chr6 37714507 37714648 -151564906 - MLT1F1 LTR MaLR -8 559 420 * 586 340 32 3 chr6 37714639 37714948 -151564606 - LTR16B LTR ERVL -52 412 95 1323 319 53 36 chr6 37714988 37716021 -151563533 - ERVL LTR ERVL -433 5221 4171 1902 319 74 49 chr6 37716261 37717620 -151561934 - ERVL LTR ERVL -2238 3526 2134 997 314 41 7 chr6 37717647 37718061 -151561493 - ERVL LTR ERVL -2966 2030 1603 351 329 132 8 chr6 37718462 37718818 -151560736 - L1ME3A LINE L1 -211 5951 5552 458 253 207 6 chr6 37718856 37719030 -151560524 + L2 LINE L2 2042 2250 -1064 535 227 61 119 chr6 37719063 37719341 -151560213 + L1MC4a LINE L1 5513 5774 -2034 283 254 42 0 chr6 37719357 37719428 -151560126 + 7SLRNA srpRNA srpRNA 234 307 -13 311 307 18 37 chr6 37719522 37719685 -151559869 + L1MC4a LINE L1 5876 6035 -1773 24 32 0 0 chr6 37719847 37719878 -151559676 + AT_rich Low_complexity Low_complexity 1 31 0 579 170 38 0 chr6 37720632 37720738 -151558816 + MER5A DNA MER1_type 3 112 -77 741 41 0 0 chr6 37720780 37720877 -151558677 + (TC)n Simple_repeat Simple_repeat 2 98 0 4658 70 0 0 chr6 37721192 37721761 -151557793 - MER61E LTR ERV1 0 569 1 321 283 44 88 chr6 37721761 37721920 -151557634 + L2 LINE L2 3162 3313 0 2117 112 7 3 chr6 37722913 37723216 -151556338 - AluSq SINE Alu -9 304 1 21 36 0 0 chr6 37723231 37723259 -151556295 + AT_rich Low_complexity Low_complexity 1 28 0 331 251 30 90 chr6 37723665 37723769 -151555785 - L1ME LINE L1 -412 5709 5617 2236 98 0 0 chr6 37723769 37724064 -151555490 - AluSg SINE Alu -15 295 1 331 251 30 90 chr6 37724064 37724126 -151555428 - L1ME LINE L1 -504 5617 5553 2432 71 0 0 chr6 37724126 37724435 -151555119 + AluY SINE Alu 1 309 -2 477 302 91 48 chr6 37724458 37725187 -151554367 - L2 LINE L2 -3 3310 2514 1362 172 29 49 chr6 37726233 37726385 -151553169 + AluJo SINE Alu 1 145 -167 435 19 0 0 chr6 37726385 37726437 -151553117 + (CA)n Simple_repeat Simple_repeat 2 53 0 1362 172 29 49 chr6 37726437 37726592 -151552962 + AluJo SINE Alu 145 302 -10 2470 172 114 53 chr6 37727273 37727958 -151551596 - LTR8A LTR ERV1 0 727 1 24 0 0 0 chr6 37728539 37728563 -151550991 + AT_rich Low_complexity Low_complexity 1 24 0 833 203 0 0 chr6 37728563 37728721 -151550833 - FRAM SINE Alu -8 168 11 1944 174 126 20 chr6 37728770 37729230 -151550324 + LTR22 LTR ERVK 1 509 0 1840 126 0 0 chr6 37729370 37729631 -151549923 - AluSq SINE Alu -52 261 1 405 331 0 0 chr6 37729745 37729881 -151549673 + L1ME1 LINE L1 6027 6162 -4 400 244 52 113 chr6 37729890 37730120 -151549434 + L1MC4 LINE L1 7762 7977 -65 204 293 9 38 chr6 37730155 37730167 -151549387 + CT-rich Low_complexity Low_complexity 5 16 -91 2514 49 0 0 chr6 37730167 37730474 -151549080 + AluY SINE Alu 1 307 -4 204 293 9 38 chr6 37730474 37730567 -151548987 + CT-rich Low_complexity Low_complexity 16 107 0 2126 73 7 3 chr6 37731266 37731553 -151548001 + AluSp SINE Alu 1 288 -25 1091 146 6 6 chr6 37732428 37732593 -151546961 + FRAM SINE Alu 1 164 -12 602 200 50 61 chr6 37732647 37732827 -151546727 - MER5B DNA MER1_type 0 178 1 537 178 9 37 chr6 37732912 37733019 -151546535 - L1MB7 LINE L1 -17 6167 6064 222 150 0 0 chr6 37733029 37733069 -151546485 + (T)n Simple_repeat Simple_repeat 1 40 0 760 61 31 0 chr6 37733069 37733167 -151546387 - HY3 scRNA scRNA 0 101 1 9988 142 24 16 chr6 37736330 37738150 -151541404 - L1MA3 LINE L1 0 6305 4454 2255 116 3 0 chr6 37738150 37738451 -151541103 - AluSp SINE Alu -11 302 1 9988 142 24 16 chr6 37738451 37739363 -151540191 - L1MA3 LINE L1 -1851 4454 3551 2156 171 144 61 chr6 37739357 37739641 -151539913 - L1MB3 LINE L1 -1 6179 5920 * 2288 104 0 3 chr6 37739641 37739939 -151539615 + AluSq SINE Alu 5 301 -12 2156 171 144 61 chr6 37739939 37740226 -151539328 - L1MB3 LINE L1 -260 5920 5658 231 88 0 0 chr6 37740226 37740260 -151539294 + (TG)n Simple_repeat Simple_repeat 1 34 0 2156 171 144 61 chr6 37740260 37740417 -151539137 - L1MB3 LINE L1 -522 5658 5317 956 244 52 32 chr6 37740430 37740778 -151538776 - L1MB3 LINE L1 -893 5253 4899 373 280 137 11 chr6 37746043 37746225 -151533329 + MIR SINE MIR 19 223 -39 22 0 0 0 chr6 37746259 37746281 -151533273 + AT_rich Low_complexity Low_complexity 1 22 0 2497 67 3 3 chr6 37746293 37746591 -151532963 + AluSc SINE Alu 1 298 -11 2066 135 0 0 chr6 37746591 37746871 -151532683 - AluSx SINE Alu -31 281 1 222 105 0 0 chr6 37746871 37746909 -151532645 + (TTTTA)n Simple_repeat Simple_repeat 5 42 0 28 29 0 0 chr6 37746927 37746962 -151532592 + AT_rich Low_complexity Low_complexity 1 35 0 820 283 113 38 chr6 37748079 37748573 -151530981 - HAL1 LINE L1 -5 2502 2046 2180 108 0 3 chr6 37748573 37748860 -151530694 - AluSc SINE Alu -23 286 1 2333 95 10 0 chr6 37748860 37749156 -151530398 - AluSp SINE Alu -14 299 1 820 283 113 38 chr6 37749156 37749314 -151530240 - HAL1 LINE L1 -460 2047 1800 180 280 67 0 chr6 37749363 37749438 -151530116 - MER5A DNA MER1_type -85 104 25 686 209 0 16 chr6 37749468 37749597 -151529957 - AluJb SINE Alu -30 282 156 1783 204 27 77 chr6 37749662 37749732 -151529822 - L1MB2 LINE L1 -1 6170 6098 691 211 0 0 chr6 37749732 37749865 -151529689 + FLAM_C SINE Alu 1 133 0 1783 204 27 77 chr6 37749865 37750315 -151529239 - L1MB2 LINE L1 -73 6098 5676 259 133 0 83 chr6 37750683 37750743 -151528811 + MLT2B3 LTR ERVL 458 546 -8 288 324 74 33 chr6 37750748 37751242 -151528312 - L2 LINE L2 -132 3181 2666 1512 230 27 29 chr6 37751251 37751695 -151527859 - L1MB2 LINE L1 -799 5347 4905 368 176 27 0 chr6 37752622 37752696 -151526858 - MER20 DNA MER1_type -138 81 6 237 284 156 38 chr6 37753104 37753470 -151526084 + L1MC4 LINE L1 7492 7900 -142 215 170 0 19 chr6 37753497 37753550 -151526004 + (CA)n Simple_repeat Simple_repeat 1 52 0 3734 165 23 9 chr6 37753553 37754345 -151525209 - HUERS-P3 LTR ERV1 -8018 901 17 3258 153 16 59 chr6 37754361 37755001 -151524553 - LTR9 LTR ERV1 0 612 1 1018 188 0 6 chr6 37755008 37755184 -151524370 - MER41D LTR ERV1 -336 221 47 1924 148 50 18 chr6 37755194 37755532 -151524022 - L1PB2 LINE L1 -31 6120 5772 407 164 0 0 chr6 37755532 37755605 -151523949 - L1MD2 LINE L1 0 6359 6287 743 174 0 8 chr6 37755605 37755737 -151523817 + AluJo SINE Alu 4 134 -178 1611 197 37 42 chr6 37755737 37756117 -151523437 - L1MD1 LINE L1 -57 6185 5808 4880 193 8 6 chr6 37756126 37757487 -151522067 - L1PA6 LINE L1 -1 6153 4792 1674 216 3 0 chr6 37757486 37757819 -151521735 - L1MB2 LINE L1 -1896 4250 3917 * 2716 94 33 13 chr6 37757832 37758224 -151521330 + MLT2A1 LTR ERVL 1 400 -44 229 55 110 0 chr6 37758224 37758297 -151521257 + (TA)n Simple_repeat Simple_repeat 2 82 0 44 56 0 0 chr6 37758302 37758374 -151521180 + AT_rich Low_complexity Low_complexity 1 72 0 554 91 76 2 chr6 37758401 37758814 -151520740 + (TA)n Simple_repeat Simple_repeat 1 443 0 555 79 83 2 chr6 37758845 37759419 -151520135 + (TA)n Simple_repeat Simple_repeat 1 620 0 201 82 55 27 chr6 37759430 37759503 -151520051 + (TA)n Simple_repeat Simple_repeat 1 75 0 429 90 5 75 chr6 37759514 37759702 -151519852 + (TA)n Simple_repeat Simple_repeat 2 176 0 455 100 11 61 chr6 37759752 37759932 -151519622 + (TA)n Simple_repeat Simple_repeat 1 171 0 277 79 0 63 chr6 37759934 37759997 -151519557 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 619 94 59 12 chr6 37759999 37760743 -151518811 + (TA)n Simple_repeat Simple_repeat 1 778 0 358 91 18 0 chr6 37760743 37760798 -151518756 + MLT2A1 LTR ERVL 389 444 0 43881 74 13 13 chr6 37760798 37766455 -151513099 + HERVL-A1-A1 LTR ERVL 1 5654 0 3005 101 18 40 chr6 37766455 37766909 -151512645 + MLT2A1 LTR ERVL 1 444 0 7756 195 34 9 chr6 37766909 37768696 -151510858 - L1PBa LINE L1 -2234 4628 2793 2092 122 61 19 chr6 37768940 37769300 -151510254 + THE1C LTR MaLR 1 375 0 3842 102 61 88 chr6 37769300 37769974 -151509580 + THE1C-int LTR MaLR 1 656 -924 2414 79 3 0 chr6 37771458 37771749 -151507805 + AluSg SINE Alu 1 292 -18 207 219 0 0 chr6 37771774 37771815 -151507739 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 228 211 42 14 chr6 37771816 37771887 -151507667 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 212 175 18 53 chr6 37773247 37773304 -151506250 + GA-rich Low_complexity Low_complexity 1 55 0 234 62 0 0 chr6 37773334 37773366 -151506188 + (TG)n Simple_repeat Simple_repeat 2 33 0 5693 166 18 10 chr6 37773960 37774097 -151505457 - L1M1 LINE L1 -671 5632 5498 239 0 32 0 chr6 37774097 37774128 -151505426 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 5693 166 18 10 chr6 37774128 37775396 -151504158 - L1M1 LINE L1 -805 5498 4214 2564 168 43 111 chr6 37775399 37776067 -151503487 + MER21B LTR ERV1 218 840 -23 1532 164 8 23 chr6 37776693 37776955 -151502599 - AluJb SINE Alu -54 258 1 1831 181 0 3 chr6 37777156 37777460 -151502094 - AluJb SINE Alu -4 308 6 6347 134 48 57 chr6 37777567 37778134 -151501420 - Tigger3b DNA MER2_type -1797 1231 660 7759 29 6 0 chr6 37778134 37779204 -151500350 - L1PA3 LINE L1 0 6155 5083 6347 134 48 57 chr6 37779204 37779878 -151499676 - Tigger3b DNA MER2_type -2368 660 2 325 409 25 9 chr6 37780087 37780407 -151499147 + L1MEc LINE L1 801 1125 -5997 298 274 24 40 chr6 37780815 37780939 -151498615 + L1MEc LINE L1 1370 1491 -4932 * 345 302 67 38 chr6 37780925 37781269 -151498285 + L1M4 LINE L1 3211 3564 -2582 1628 138 11 0 chr6 37781287 37781547 -151498007 + MER2 DNA MER2_type 1 263 -82 2504 121 14 3 chr6 37781658 37782029 -151497525 + THE1C LTR MaLR 1 375 0 2319 263 90 25 chr6 37782039 37783171 -151496383 + L1M4 LINE L1 3593 4798 -1348 472 170 16 0 chr6 37783186 37783295 -151496259 - L1 LINE L1 -1079 5303 5190 808 226 30 0 chr6 37783296 37783460 -151496094 - FRAM SINE Alu -7 169 1 303 250 11 11 chr6 37783465 37783557 -151495997 - L1 LINE L1 -1191 5191 5100 * 1862 238 63 53 chr6 37783551 37783736 -151495818 - L1M4c LINE L1 -4573 2073 1891 761 138 0 14 chr6 37783736 37783874 -151495680 - L1MB2 LINE L1 -1 6170 6035 1862 238 63 53 chr6 37783874 37784386 -151495168 - L1M4c LINE L1 -4755 1891 1369 851 209 17 12 chr6 37784375 37784626 -151494928 - L1M4c LINE L1 -4719 1926 1303 * 6514 63 10 86 chr6 37784629 37785662 -151493892 - SVA Other Other 0 1386 433 986 96 20 170 chr6 37785679 37787671 -151491883 - SVA Other Other -629 866 433 319 284 167 10 chr6 37787728 37787830 -151491724 + L1MC4 LINE L1 6585 6702 -1340 401 305 0 0 chr6 37787833 37787928 -151491626 - L1MC4 LINE L1 -1339 6703 6609 2250 273 56 68 chr6 37787935 37789171 -151490383 - L1M4c LINE L1 -5320 1222 2 447 274 61 79 chr6 37789170 37789389 -151490165 - L1MEc LINE L1 -4535 1861 1653 * 472 155 52 0 chr6 37789389 37789486 -151490068 + L1MA7 LINE L1 6187 6288 -3 447 274 61 79 chr6 37789486 37789707 -151489847 - L1MEc LINE L1 -4743 1653 1429 817 256 68 8 chr6 37789866 37790116 -151489438 + MLT2D LTR ERVL 1 265 -149 1523 197 6 60 chr6 37790117 37790468 -151489086 + MER21B-int LTR ERV1 2341 2672 -1519 876 120 21 0 chr6 37790468 37790610 -151488944 + MSTA LTR MaLR 1 145 -283 383 219 0 0 chr6 37790610 37790683 -151488871 + MER21B-int LTR ERV1 2667 2739 -1452 363 295 70 0 chr6 37790689 37790818 -151488736 + FRAM SINE Alu 16 153 -13 492 194 22 72 chr6 37790828 37790967 -151488587 + MER21B-int LTR ERV1 2742 2873 -1318 2073 149 0 0 chr6 37790972 37791274 -151488280 + AluSx SINE Alu 1 302 -10 2703 237 62 43 chr6 37791325 37791666 -151487888 + MER21B-int LTR ERV1 3068 3401 -790 198 0 0 0 chr6 37791666 37791688 -151487866 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2703 237 62 43 chr6 37791688 37792301 -151487253 + MER21B-int LTR ERV1 3401 4040 -151 1506 235 0 9 chr6 37792398 37792713 -151486841 + AluJo SINE Alu 1 312 0 1256 261 11 25 chr6 37792749 37793105 -151486449 + MER21B LTR ERV1 2 352 -511 317 183 24 24 chr6 37793624 37793706 -151485848 + MER4C LTR ERV1 65 146 -319 494 337 34 4 chr6 37794521 37794785 -151484769 - LTR16B LTR ERVL -131 333 62 1459 342 40 35 chr6 37794793 37796012 -151483542 - ERVL LTR ERVL -504 5260 3693 * 1660 303 57 38 chr6 37796011 37796855 -151482699 - ERVL LTR ERVL -2240 3524 2665 253 175 0 0 chr6 37796922 37796962 -151482592 - Alu SINE Alu -19 281 242 * 255 125 0 25 chr6 37796953 37796993 -151482561 - AluSg/x SINE Alu -136 164 126 2168 109 6 13 chr6 37796993 37797306 -151482248 - AluSp SINE Alu 0 313 3 1935 293 52 47 chr6 37797317 37798290 -151481264 - ERVL LTR ERVL -2430 2566 1589 1167 321 47 20 chr6 37798346 37798788 -151480766 - ERVL LTR ERVL -3534 1462 998 1943 137 90 29 chr6 37798788 37799131 -151480423 + THE1B LTR MaLR 1 364 0 1167 321 47 20 chr6 37799131 37799282 -151480272 - ERVL LTR ERVL -3998 998 853 295 321 94 54 chr6 37799430 37799707 -151479847 - ERVL LTR ERVL -4444 552 265 636 285 72 93 chr6 37799960 37800123 -151479431 - LTR16B LTR ERVL 0 464 299 1727 134 0 0 chr6 37800123 37800362 -151479192 - AluSx SINE Alu -73 239 1 636 285 72 93 chr6 37800362 37800672 -151478882 - LTR16B LTR ERVL -165 299 1 2077 252 68 45 chr6 37800672 37801441 -151478113 - L2 LINE L2 -1658 1656 871 270 233 122 0 chr6 37801513 37801603 -151477951 - L2 LINE L2 -2411 903 803 229 228 63 0 chr6 37801705 37801784 -151477770 - L2 LINE L2 -2513 801 718 1598 265 72 19 chr6 37801813 37802397 -151477157 - MLT1E2 LTR MaLR -11 615 1 1468 282 105 14 chr6 37802404 37803025 -151476529 - L2 LINE L2 -2620 694 18 1913 131 84 6 chr6 37804252 37804595 -151474959 - Tigger1 DNA MER2_type 0 2418 2049 2242 169 10 5 chr6 37804601 37804998 -151474556 - Tigger1 DNA MER2_type -1965 453 55 215 79 26 0 chr6 37804999 37805037 -151474517 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 231 272 99 0 chr6 37805280 37805361 -151474193 + MIR SINE MIR 112 200 -62 976 143 7 60 chr6 37805634 37805855 -151473699 - MLT2A2 LTR ERVL 0 453 293 267 319 0 0 chr6 37806281 37806375 -151473179 + (TG)n Simple_repeat Simple_repeat 1 94 0 2609 68 48 0 chr6 37806657 37806993 -151472561 - THE1A LTR MaLR -3 352 1 25 0 0 0 chr6 37807426 37807451 -151472103 + AT_rich Low_complexity Low_complexity 1 25 0 948 300 40 9 chr6 37807649 37808069 -151471485 + LTR33 LTR ERVL 10 442 -79 805 173 0 0 chr6 37808188 37808315 -151471239 - FLAM_C SINE Alu -16 127 1 2571 63 0 0 chr6 37812763 37813063 -151466491 - AluY SINE Alu -11 300 1 841 203 17 6 chr6 37813521 37813698 -151465856 - MLT1B LTR MaLR 0 390 212 2521 70 0 16 chr6 37813863 37814177 -151465377 + AluY SINE Alu 1 309 -2 2773 149 2 4 chr6 37814514 37814971 -151464583 - L1MA4A LINE L1 -9 6294 5839 218 93 56 37 chr6 37815168 37815222 -151464332 + (TACTG)n Simple_repeat Simple_repeat 1 55 0 2380 54 30 3 chr6 37815281 37815578 -151463976 - AluY SINE Alu -4 307 3 352 332 121 3 chr6 37815600 37815958 -151463596 - L1ME3 LINE L1 -211 5951 5552 371 290 252 5 chr6 37815958 37816172 -151463382 + L2 LINE L2 1984 2250 -1064 491 280 76 9 chr6 37816205 37816416 -151463138 + L1MC4a LINE L1 5513 5737 -2071 378 234 71 59 chr6 37816631 37816870 -151462684 + L1MC4a LINE L1 5812 6053 -1755 37 23 0 0 chr6 37817010 37817054 -151462500 + AT_rich Low_complexity Low_complexity 1 44 0 585 170 38 0 chr6 37817802 37817908 -151461646 + MER5A DNA MER1_type 3 112 -77 297 0 0 0 chr6 37817950 37817983 -151461571 + (TC)n Simple_repeat Simple_repeat 2 34 0 4617 77 0 0 chr6 37818297 37818866 -151460688 - MER61E LTR ERV1 0 569 1 314 342 63 32 chr6 37818867 37819025 -151460529 + L2 LINE L2 3110 3272 0 1454 173 38 63 chr6 37821069 37821225 -151458329 + AluJo SINE Alu 1 146 -166 270 0 0 0 chr6 37821225 37821255 -151458299 + (CA)n Simple_repeat Simple_repeat 2 31 0 1454 173 38 63 chr6 37821255 37821416 -151458138 + AluJo SINE Alu 146 310 -2 2362 175 116 64 chr6 37822105 37822449 -151457105 - LTR8A LTR ERV1 0 727 402 2643 48 0 3 chr6 37822449 37822761 -151456793 + AluY SINE Alu 1 311 0 2362 175 116 64 chr6 37822761 37823107 -151456447 - LTR8A LTR ERV1 -325 402 1 914 192 0 0 chr6 37823708 37823864 -151455690 - FRAM SINE Alu -10 166 11 22 0 0 0 chr6 37824001 37824023 -151455531 + AT_rich Low_complexity Low_complexity 1 22 0 2113 88 0 0 chr6 37824048 37824308 -151455246 - AluSq SINE Alu -53 260 1 422 316 0 0 chr6 37824422 37824555 -151454999 + L1ME1 LINE L1 6027 6159 -7 358 242 33 121 chr6 37824579 37824794 -151454760 + L1MC4 LINE L1 7779 7974 -68 205 329 0 24 chr6 37824833 37824915 -151454639 + CT-rich Low_complexity Low_complexity 2 81 0 2451 57 13 0 chr6 37825612 37825913 -151453641 + AluSp SINE Alu 1 305 -8 196 235 25 74 chr6 37826411 37826492 -151453062 + MIR SINE MIR 22 98 -110 222 326 0 0 chr6 37826731 37826780 -151452774 - L2 LINE L2 -82 3190 3142 973 161 11 33 chr6 37826804 37826984 -151452570 + FRAM SINE Alu 1 176 0 739 251 29 11 chr6 37827043 37827218 -151452336 - MER5B DNA MER1_type 0 178 1 507 161 9 54 chr6 37827298 37827410 -151452144 - L1MB7 LINE L1 -17 6167 6061 2430 81 3 3 chr6 37827419 37827728 -151451826 - AluY SINE Alu 0 311 3 792 79 0 0 chr6 37827753 37827854 -151451700 - HY3 scRNA scRNA 0 101 1 2657 36 13 0 chr6 37829508 37829813 -151449741 - AluY SINE Alu -2 309 1 9459 140 20 12 chr6 37831347 37833101 -151446453 - L1MA3 LINE L1 0 6305 4517 2311 104 3 3 chr6 37833101 37833400 -151446154 + AluSp SINE Alu 1 299 -14 9459 140 20 12 chr6 37833400 37834376 -151445178 - L1MA3 LINE L1 -1788 4517 3551 3265 200 61 56 chr6 37834370 37834997 -151444557 - L1MB2 LINE L1 -4 6167 5544 * 417 20 0 0 chr6 37834997 37835047 -151444507 + (TG)n Simple_repeat Simple_repeat 1 50 0 3265 200 61 56 chr6 37835047 37835308 -151444246 - L1MB2 LINE L1 -627 5544 5286 2505 90 0 0 chr6 37835308 37835619 -151443935 - AluY SINE Alu 0 311 1 3265 200 61 56 chr6 37835619 37835987 -151443567 - L1MB2 LINE L1 -885 5286 4899 2307 141 25 13 chr6 37841146 37841543 -151438011 + LTR3 LTR ERVK 22 423 -9 2154 145 0 0 chr6 37841593 37841904 -151437650 - AluSx SINE Alu -1 311 1 195 114 0 0 chr6 37841904 37841939 -151437615 + (TTATA)n Simple_repeat Simple_repeat 3 37 0 23 0 0 0 chr6 37841967 37841990 -151437564 + AT_rich Low_complexity Low_complexity 1 23 0 203 0 0 36 chr6 37842887 37842915 -151436639 + (TAA)n Simple_repeat Simple_repeat 1 27 0 2583 74 0 3 chr6 37843115 37843427 -151436127 - AluY SINE Alu 0 311 1 689 276 22 65 chr6 37843466 37843821 -151435733 - L1MC5 LINE L1 -519 7442 7103 2294 103 3 0 chr6 37843822 37844124 -151435430 + AluSp SINE Alu 1 303 -10 393 282 110 38 chr6 37844239 37844448 -151435106 + L1ME3A LINE L1 5932 6155 -15 519 323 84 8 chr6 37844746 37845115 -151434439 + MERVL LTR ERVL 3836 4232 -1253 508 319 73 67 chr6 37845213 37845677 -151433877 + L1M4 LINE L1 3427 3893 -2253 2955 124 8 33 chr6 37845762 37845856 -151433698 + L1PA15 LINE L1 5694 5789 -376 2651 64 0 0 chr6 37845856 37846167 -151433387 + AluY SINE Alu 1 311 0 2955 124 8 33 chr6 37846167 37846555 -151432999 + L1PA15 LINE L1 5789 6164 -1 483 35 0 0 chr6 37846594 37846652 -151432902 + AluY SINE Alu 2 59 -259 350 216 91 0 chr6 37846652 37846740 -151432814 - L2 LINE L2 -259 3054 2959 2446 99 0 3 chr6 37848014 37848327 -151431227 - AluSx SINE Alu 0 312 1 1997 176 185 62 chr6 37848424 37848833 -151430721 + L1MD3 LINE L1 6698 7055 -940 366 226 22 12 chr6 37848833 37848925 -151430629 + MLT1F1 LTR MaLR 39 130 -443 1997 176 185 62 chr6 37848925 37849406 -151430148 + L1MD3 LINE L1 7055 7970 -25 2159 90 0 0 chr6 37849420 37849697 -151429857 - AluSx SINE Alu 0 312 36 656 161 116 9 chr6 37849743 37849855 -151429699 + FLAM_C SINE Alu 2 125 -8 409 264 50 0 chr6 37849862 37850021 -151429533 + L1M4 LINE L1 3440 3606 -2540 2318 79 7 3 chr6 37850239 37850531 -151429023 + AluSp SINE Alu 1 293 -20 2422 82 3 3 chr6 37850719 37851022 -151428532 + AluSx SINE Alu 3 305 -7 4906 204 35 47 chr6 37851441 37852211 -151427343 + L1M4 LINE L1 3613 4391 -1755 2399 92 0 0 chr6 37852211 37852504 -151427050 - AluSg SINE Alu -17 293 1 4906 204 35 47 chr6 37852504 37852909 -151426645 + L1M4 LINE L1 4391 4772 -1374 3829 124 35 52 chr6 37852909 37853076 -151426478 + L1MA8 LINE L1 5553 5721 -570 620 189 90 0 chr6 37853076 37853198 -151426356 - FLAM_A SINE Alu 0 133 1 3829 124 35 52 chr6 37853198 37853778 -151425776 + L1MA8 LINE L1 5721 6287 -4 4906 204 35 47 chr6 37853778 37853957 -151425597 + L1M4 LINE L1 4772 4952 -1194 181 390 13 0 chr6 37853962 37854039 -151425515 + MIR SINE MIR 159 236 -26 818 183 78 90 chr6 37854388 37854438 -151425116 - MSTD LTR MaLR 0 396 347 1927 148 7 3 chr6 37854438 37854736 -151424818 - AluJb SINE Alu -12 300 2 818 183 78 90 chr6 37854736 37854950 -151424604 - MSTD LTR MaLR -49 347 82 2499 90 0 0 chr6 37854950 37855251 -151424303 + AluSq SINE Alu 1 301 -12 818 183 78 90 chr6 37855251 37855313 -151424241 - MSTD LTR MaLR -314 82 21 2507 74 0 10 chr6 37855412 37855724 -151423830 - AluSc SINE Alu 0 309 1 1911 154 0 0 chr6 37856048 37856328 -151423226 + AluSx SINE Alu 1 280 -32 2442 92 0 10 chr6 37856359 37856673 -151422881 - AluSx SINE Alu -1 311 1 1542 163 119 41 chr6 37857527 37857692 -151421862 - Tigger1 DNA MER2_type 0 2418 2267 2182 108 4 0 chr6 37857692 37857970 -151421584 - AluSx SINE Alu -33 279 1 1542 163 119 41 chr6 37857970 37858166 -151421388 - Tigger1 DNA MER2_type -151 2267 2029 * 1720 188 51 30 chr6 37858161 37858554 -151421000 - Tigger1 DNA MER2_type -2017 401 1 2601 50 0 0 chr6 37858807 37859106 -151420448 + AluY SINE Alu 2 300 -11 226 203 63 13 chr6 37859900 37859979 -151419575 + (CTGGGG)n Simple_repeat Simple_repeat 2 84 0 * 241 220 0 0 chr6 37859934 37859984 -151419570 + G-rich Low_complexity Low_complexity 3 52 0 1752 142 0 51 chr6 37862882 37863177 -151416377 - AluJo SINE Alu -24 288 9 1788 181 0 3 chr6 37863305 37863593 -151415961 - AluJo SINE Alu -25 287 1 206 271 0 0 chr6 37863967 37864015 -151415539 + G-rich Low_complexity Low_complexity 1 48 0 1136 145 0 0 chr6 37864691 37864843 -151414711 - FAM SINE Alu -22 163 12 1797 161 41 3 chr6 37865059 37865351 -151414203 - AluJb SINE Alu -9 303 1 25 51 0 0 chr6 37865564 37865603 -151413951 + AT_rich Low_complexity Low_complexity 1 39 0 229 308 0 0 chr6 37866348 37866413 -151413141 + GA-rich Low_complexity Low_complexity 3 67 0 224 261 197 92 chr6 37867829 37867971 -151411583 - MIR3 SINE MIR -14 194 38 1074 145 73 0 chr6 37868015 37868194 -151411360 + AluSp SINE Alu 121 312 -1 1665 182 10 10 chr6 37868197 37868504 -151411050 + AluSx SINE Alu 1 307 -5 251 329 88 27 chr6 37868603 37868807 -151410747 + L1MC4a LINE L1 7097 7326 -482 2165 113 10 10 chr6 37868807 37869117 -151410437 + AluSx SINE Alu 1 310 -2 251 329 88 27 chr6 37869117 37869207 -151410347 + L1MC4a LINE L1 7326 7409 -399 1983 164 0 3 chr6 37869210 37869503 -151410051 - AluSx SINE Alu -14 298 7 341 143 0 0 chr6 37871055 37871111 -151408443 - AluJ SINE Alu -36 266 211 890 149 0 27 chr6 37871112 37871260 -151408294 - AluJ SINE Alu -168 144 1 2010 83 79 4 chr6 37873736 37874013 -151405541 - AluSx SINE Alu -14 298 1 240 341 167 0 chr6 37874192 37874318 -151405236 - MIR SINE MIR -64 198 52 526 256 96 45 chr6 37874489 37874649 -151404905 - L2 LINE L2 -1 3312 3139 1530 169 68 0 chr6 37874649 37874915 -151404639 + AluJo SINE Alu 5 288 -24 526 256 96 45 chr6 37874915 37874953 -151404601 - L2 LINE L2 -174 3139 3104 2316 116 0 0 chr6 37875158 37875459 -151404095 + AluSp SINE Alu 1 301 -12 596 265 51 25 chr6 37875958 37876154 -151403400 - MIR SINE MIR -13 249 49 425 216 128 88 chr6 37879766 37879914 -151399640 + MIR SINE MIR 7 160 -102 * 805 249 95 5 chr6 37879909 37880130 -151399424 - MIR SINE MIR -21 241 1 250 232 122 24 chr6 37880195 37880277 -151399277 + MIR SINE MIR 173 262 0 2154 138 10 0 chr6 37880292 37880597 -151398957 - AluSq SINE Alu -5 308 1 918 250 50 28 chr6 37880619 37880939 -151398615 + MER46C DNA MER2_type 1 327 -11 2223 119 0 3 chr6 37880965 37881260 -151398294 + AluSg SINE Alu 1 294 -16 2318 94 13 0 chr6 37881723 37882031 -151397523 - AluSp SINE Alu -1 312 1 1813 175 7 3 chr6 37882063 37882371 -151397183 - AluJo SINE Alu -3 309 1 324 255 30 62 chr6 37882382 37882561 -151396993 - MIR3 SINE MIR -68 140 7 2135 109 0 81 chr6 37882642 37882829 -151396725 - AluSx SINE Alu -14 298 146 2243 118 0 10 chr6 37882829 37883142 -151396412 - AluSx SINE Alu -2 310 1 2135 109 0 81 chr6 37883142 37883274 -151396280 - AluSx SINE Alu -166 146 5 2117 78 0 57 chr6 37883290 37883627 -151395927 - AluSc SINE Alu 0 320 1 2461 78 0 31 chr6 37883722 37884043 -151395511 - AluY SINE Alu 0 311 1 2087 111 30 20 chr6 37884079 37884377 -151395177 - AluSx SINE Alu -11 301 1 2339 108 0 0 chr6 37884693 37884999 -151394555 - AluSg1 SINE Alu -3 306 1 1803 145 13 33 chr6 37885163 37885467 -151394087 + AluJo SINE Alu 1 298 -14 242 286 198 37 chr6 37885612 37885829 -151393725 + L1ME4a LINE L1 5409 5660 -2148 425 323 63 36 chr6 37885863 37886118 -151393436 + L1ME4a LINE L1 5742 6004 -117 2539 80 0 6 chr6 37886266 37886579 -151392975 - AluSx SINE Alu -1 311 1 1807 84 3 131 chr6 37886654 37886998 -151392556 - AluSg SINE Alu 0 300 1 2549 63 0 3 chr6 37888145 37888445 -151391109 - AluY SINE Alu -12 299 1 2058 112 16 36 chr6 37892439 37892742 -151386812 + AluSx SINE Alu 1 297 -15 313 254 172 0 chr6 37892742 37892864 -151386690 - L2 LINE L2 -21 3292 3150 354 326 221 5 chr6 37892910 37893358 -151386196 - L2 LINE L2 -975 2339 1795 676 314 59 5 chr6 37943702 37943922 -151335632 + MIR SINE MIR 19 250 -12 1329 287 31 21 chr6 37943923 37944348 -151335206 + LTR16A LTR ERVL 18 446 -4 1372 186 18 46 chr6 37944360 37944640 -151334914 + MSTD LTR MaLR 1 272 -124 334 219 21 0 chr6 37944644 37944740 -151334814 + L1MA6 LINE L1 5961 6058 -242 280 268 27 27 chr6 37945132 37945244 -151334310 + L1ME4a LINE L1 2957 3068 -3078 207 170 0 38 chr6 37945275 37945328 -151334226 + A-rich Low_complexity Low_complexity 5 55 0 259 338 58 17 chr6 37945544 37945784 -151333770 - L1M4 LINE L1 -2089 4057 3808 901 129 0 7 chr6 37945895 37946042 -151333512 + L1MA6 LINE L1 6149 6294 -6 293 347 53 15 chr6 37946186 37946451 -151333103 + L1ME4a LINE L1 3797 4071 -2075 340 299 46 61 chr6 37946492 37946689 -151332865 + L1ME4a LINE L1 5115 5308 -838 813 165 0 0 chr6 37946689 37946816 -151332738 + AluJ SINE Alu 1 127 -175 546 169 0 0 chr6 37946830 37946913 -151332641 + AluJ SINE Alu 197 279 -33 908 84 8 0 chr6 37946913 37947044 -151332510 + (GAA)n Simple_repeat Simple_repeat 1 132 0 274 336 86 10 chr6 37947057 37947578 -151331976 + L1ME4a LINE L1 5378 5938 -183 289 315 135 0 chr6 37947629 37947740 -151331814 - L2 LINE L2 -2 3311 3186 311 244 80 34 chr6 37947905 37948081 -151331473 + L1M4 LINE L1 4884 5067 -1079 4432 74 22 51 chr6 37948181 37949097 -151330457 + SVA Other Other 152 866 -520 5854 71 56 57 chr6 37949125 37950859 -151328695 + SVA Other Other 432 1380 -6 902 207 14 11 chr6 37950863 37951113 -151328441 + L1M4 LINE L1 1277 1525 -5017 * 2005 238 63 53 chr6 37951110 37951622 -151327932 + L1M4 LINE L1 1369 1891 -4755 768 138 0 14 chr6 37951622 37951760 -151327794 + L1MB2 LINE L1 6035 6170 -1 2005 238 63 53 chr6 37951760 37951945 -151327609 + L1M4 LINE L1 1891 2073 -4573 318 250 11 11 chr6 37951939 37952031 -151327523 + L1M4 LINE L1 5362 5453 -1191 * 782 226 30 0 chr6 37952036 37952200 -151327354 + AluJo SINE Alu 137 305 -7 469 170 16 0 chr6 37952201 37952310 -151327244 + L1M4 LINE L1 5452 5565 -1079 2245 263 90 25 chr6 37952325 37953457 -151326097 - L1M4 LINE L1 -1348 4798 3593 1392 98 6 0 chr6 37953467 37953650 -151325904 - THE1C LTR MaLR 0 375 192 1446 186 6 46 chr6 37953921 37954073 -151325481 + AluJo SINE Alu 1 135 -177 321 26 0 0 chr6 37954073 37954111 -151325443 + (CA)n Simple_repeat Simple_repeat 2 39 0 1446 186 6 46 chr6 37954111 37954281 -151325273 + AluJo SINE Alu 135 310 -2 2320 174 109 79 chr6 37954970 37955315 -151324239 - LTR8A LTR ERV1 0 727 394 2478 45 7 0 chr6 37955315 37955624 -151323930 + AluY SINE Alu 1 311 0 2320 174 109 79 chr6 37955624 37955984 -151323570 - LTR8A LTR ERV1 -333 394 1 1380 176 4 19 chr6 37956716 37956978 -151322576 - AluJb SINE Alu -54 258 1 1719 181 0 3 chr6 37957179 37957483 -151322071 - AluJb SINE Alu -4 308 6 5861 138 71 58 chr6 37957591 37957937 -151321617 - Tigger3b DNA MER2_type -1797 1231 891 215 61 30 0 chr6 37957937 37957970 -151321584 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 5861 138 71 58 chr6 37957970 37958162 -151321392 - Tigger3b DNA MER2_type -2137 891 703 7818 23 6 0 chr6 37958162 37959232 -151320322 - L1PA3 LINE L1 0 6155 5083 5861 138 71 58 chr6 37959232 37959907 -151319647 - Tigger3b DNA MER2_type -2325 703 2 439 409 25 9 chr6 37960116 37960436 -151319118 + L1MEc LINE L1 801 1125 -5997 292 274 24 40 chr6 37960844 37960968 -151318586 + L1MEc LINE L1 1370 1491 -4932 * 336 302 67 38 chr6 37960954 37961298 -151318256 + L1M4 LINE L1 3211 3564 -2582 1634 135 11 0 chr6 37961316 37961576 -151317978 + MER2 DNA MER2_type 1 263 -82 2507 121 14 3 chr6 37961687 37962058 -151317496 + THE1C LTR MaLR 1 375 0 2254 263 90 25 chr6 37962068 37963200 -151316354 + L1M4 LINE L1 3593 4798 -1348 469 170 16 0 chr6 37963215 37963324 -151316230 - L1 LINE L1 -1079 5067 4954 770 226 30 0 chr6 37963325 37963489 -151316065 - FRAM SINE Alu -7 169 1 318 250 11 11 chr6 37963494 37963586 -151315968 - L1 LINE L1 -1191 4955 4864 * 2951 223 38 148 chr6 37963580 37963765 -151315789 - L1M4c LINE L1 -4573 2073 1869 752 116 7 22 chr6 37963765 37963903 -151315651 - L1MB2 LINE L1 -1 6170 6035 2951 223 38 148 chr6 37963903 37966011 -151313543 - L1M4c LINE L1 -4777 1869 2 495 270 61 86 chr6 37966010 37966229 -151313325 - L1MEc LINE L1 -4535 1861 1657 * 485 149 53 0 chr6 37966229 37966323 -151313231 + L1MA7 LINE L1 6187 6285 -6 495 270 61 86 chr6 37966323 37966547 -151313007 - L1MEc LINE L1 -4739 1657 1429 873 256 68 8 chr6 37966706 37966956 -151312598 + MLT2D LTR ERVL 1 265 -149 1548 208 6 60 chr6 37966957 37967308 -151312246 + MER21B-int LTR ERV1 2341 2672 -1519 939 113 21 0 chr6 37967308 37967450 -151312104 + MSTA LTR MaLR 1 145 -283 406 219 0 0 chr6 37967450 37967523 -151312031 + MER21B-int LTR ERV1 2667 2739 -1452 407 256 85 16 chr6 37967529 37967658 -151311896 + FRAM SINE Alu 16 153 -13 528 194 22 72 chr6 37967668 37967807 -151311747 + MER21B-int LTR ERV1 2742 2873 -1318 1921 149 0 0 chr6 37967812 37968114 -151311440 + AluSx SINE Alu 1 302 -10 2938 238 61 42 chr6 37968165 37968506 -151311048 + MER21B-int LTR ERV1 3068 3401 -790 414 0 0 0 chr6 37968506 37968552 -151311002 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 2938 238 61 42 chr6 37968552 37969165 -151310389 + MER21B-int LTR ERV1 3401 4040 -151 1346 232 0 10 chr6 37969262 37969572 -151309982 + AluJo SINE Alu 1 307 -5 1347 261 11 25 chr6 37969613 37969969 -151309585 + MER21B LTR ERV1 2 352 -511 337 183 24 24 chr6 37970488 37970570 -151308984 + MER4C LTR ERV1 65 146 -319 554 337 34 4 chr6 37971385 37971649 -151307905 - LTR16B LTR ERVL -131 333 62 1550 338 40 36 chr6 37971657 37972876 -151306678 - ERVL LTR ERVL -504 5260 3693 * 1830 291 65 45 chr6 37972875 37973728 -151305826 - ERVL LTR ERVL -2240 3524 2655 270 175 0 0 chr6 37973786 37973826 -151305728 - Alu SINE Alu -19 282 243 * 286 133 0 22 chr6 37973817 37973862 -151305692 - AluSg/x SINE Alu -136 164 121 2025 118 7 0 chr6 37973864 37974170 -151305384 - AluSp SINE Alu -3 310 3 2121 289 53 48 chr6 37974181 37975154 -151304400 - ERVL LTR ERVL -2430 2566 1589 1271 314 47 22 chr6 37975225 37975653 -151303901 - ERVL LTR ERVL -3550 1446 999 1917 137 90 29 chr6 37975653 37975996 -151303558 + THE1B LTR MaLR 1 364 0 1271 314 47 22 chr6 37975996 37976147 -151303407 - ERVL LTR ERVL -3997 999 853 326 307 101 61 chr6 37976295 37976572 -151302982 - ERVL LTR ERVL -4444 552 265 729 272 78 99 chr6 37976825 37976988 -151302566 - LTR16B LTR ERVL 0 464 299 1609 134 0 0 chr6 37976988 37977227 -151302327 - AluSx SINE Alu -73 239 1 729 272 78 99 chr6 37977227 37977537 -151302017 - LTR16B LTR ERVL -165 299 1 2037 251 68 45 chr6 37977537 37978306 -151301248 - L2 LINE L2 -1658 1656 871 266 233 122 0 chr6 37978378 37978468 -151301086 - L2 LINE L2 -2411 903 803 217 241 63 0 chr6 37978570 37978649 -151300905 - L2 LINE L2 -2513 801 718 1716 260 71 27 chr6 37978678 37979173 -151300381 - MLT1E2 LTR MaLR -11 615 88 2509 26 7 10 chr6 37979173 37979483 -151300071 - AluY SINE Alu -2 309 1 1716 260 71 27 chr6 37979483 37979576 -151299978 - MLT1E2 LTR MaLR -538 88 1 1413 282 105 14 chr6 37979583 37980204 -151299350 - L2 LINE L2 -2620 694 18 2029 131 84 6 chr6 37981434 37981777 -151297777 - Tigger1 DNA MER2_type 0 2418 2049 2358 169 10 5 chr6 37981783 37982180 -151297374 - Tigger1 DNA MER2_type -1965 453 55 215 79 26 0 chr6 37982181 37982219 -151297335 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 227 272 99 0 chr6 37982462 37982543 -151297011 + MIR SINE MIR 112 200 -62 1030 143 7 60 chr6 37982816 37983037 -151296517 - MLT2A2 LTR ERVL 0 453 293 267 319 0 0 chr6 37983463 37983557 -151295997 + (TG)n Simple_repeat Simple_repeat 1 94 0 2594 68 48 0 chr6 37983839 37984175 -151295379 - THE1A LTR MaLR -3 352 1 25 0 0 0 chr6 37984608 37984633 -151294921 + AT_rich Low_complexity Low_complexity 1 25 0 1052 288 48 17 chr6 37984831 37985251 -151294303 + LTR33 LTR ERVL 10 442 -79 756 180 0 0 chr6 37985374 37985496 -151294058 - FLAM_C SINE Alu -20 123 2 2505 71 0 0 chr6 37989946 37990243 -151289311 - AluY SINE Alu -14 297 1 906 198 17 6 chr6 37990701 37990878 -151288676 - MLT1B LTR MaLR 0 390 212 2488 68 0 16 chr6 37991043 37991352 -151288202 + AluY SINE Alu 1 304 -7 2837 142 2 4 chr6 37991690 37992147 -151287407 - L1MA4A LINE L1 -9 6294 5839 218 93 56 37 chr6 37992344 37992398 -151287156 + (TACTG)n Simple_repeat Simple_repeat 1 55 0 2369 50 30 3 chr6 37992457 37992755 -151286799 - AluY SINE Alu -5 306 1 392 328 121 3 chr6 37992775 37993133 -151286421 - L1ME3 LINE L1 -211 5951 5552 303 280 252 5 chr6 37993133 37993347 -151286207 + L2 LINE L2 1984 2250 -1064 548 242 90 24 chr6 37993380 37993591 -151285963 + L1MC4a LINE L1 5513 5737 -2071 430 234 71 59 chr6 37993806 37994045 -151285509 + L1MC4a LINE L1 5812 6053 -1755 37 23 0 0 chr6 37994185 37994229 -151285325 + AT_rich Low_complexity Low_complexity 1 44 0 533 170 38 0 chr6 37994977 37995083 -151284471 + MER5A DNA MER1_type 3 112 -77 543 103 0 0 chr6 37995125 37995222 -151284332 + (TC)n Simple_repeat Simple_repeat 2 98 0 4563 75 0 2 chr6 37995537 37996107 -151283447 - MER61E LTR ERV1 0 569 1 263 328 42 34 chr6 37996147 37996266 -151283288 + L2 LINE L2 3153 3272 0 1556 186 6 46 chr6 37998322 37998474 -151281080 + AluJo SINE Alu 1 135 -177 321 26 0 0 chr6 37998474 37998512 -151281042 + (CA)n Simple_repeat Simple_repeat 2 39 0 1556 186 6 46 chr6 37998512 37998682 -151280872 + AluJo SINE Alu 135 310 -2 2316 174 109 79 chr6 37999371 37999716 -151279838 - LTR8A LTR ERV1 0 727 394 2612 45 7 0 chr6 37999716 38000025 -151279529 + AluY SINE Alu 1 311 0 2316 174 109 79 chr6 38000025 38000385 -151279169 - LTR8A LTR ERV1 -333 394 1 9676 67 13 2 chr6 38000580 38001789 -151277765 + HERVL-A1 LTR ERVL 4432 5654 0 3005 101 18 40 chr6 38001789 38002243 -151277311 + MLT2A1 LTR ERVL 1 444 0 7746 195 34 8 chr6 38002243 38004029 -151275525 - L1PBa LINE L1 -2234 4628 2793 2092 122 61 19 chr6 38004273 38004633 -151274921 + THE1C LTR MaLR 1 375 0 3842 102 61 88 chr6 38004633 38005307 -151274247 + THE1C-int LTR MaLR 1 656 -924 2414 79 3 0 chr6 38006791 38007082 -151272472 + AluSg SINE Alu 1 292 -18 207 219 0 0 chr6 38007107 38007148 -151272406 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 228 211 42 14 chr6 38007149 38007220 -151272334 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 221 172 17 52 chr6 38008578 38008636 -151270918 + GA-rich Low_complexity Low_complexity 3 58 0 342 45 0 0 chr6 38008666 38008710 -151270844 + (TG)n Simple_repeat Simple_repeat 2 45 0 5693 166 18 10 chr6 38009304 38009441 -151270113 - L1M1 LINE L1 -671 5632 5498 239 0 32 0 chr6 38009441 38009472 -151270082 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 5693 166 18 10 chr6 38009472 38010740 -151268814 - L1M1 LINE L1 -805 5498 4214 2564 168 43 111 chr6 38010743 38011411 -151268143 + MER21B LTR ERV1 218 840 -23 1496 177 3 66 chr6 38011965 38012298 -151267256 - AluJb SINE Alu 0 312 1 1831 181 0 3 chr6 38012499 38012803 -151266751 - AluJb SINE Alu -4 308 6 5912 138 71 58 chr6 38012911 38013257 -151266297 - Tigger3b DNA MER2_type -1797 1231 891 215 61 30 0 chr6 38013257 38013290 -151266264 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 5912 138 71 58 chr6 38013290 38013482 -151266072 - Tigger3b DNA MER2_type -2137 891 703 7840 23 6 0 chr6 38013482 38014552 -151265002 - L1PA3 LINE L1 0 6155 5083 5912 138 71 58 chr6 38014552 38015227 -151264327 - Tigger3b DNA MER2_type -2325 703 2 334 409 25 9 chr6 38015436 38015756 -151263798 + L1MEc LINE L1 801 1125 -5997 298 274 24 40 chr6 38016164 38016288 -151263266 + L1MEc LINE L1 1370 1491 -4932 * 350 302 67 38 chr6 38016274 38016618 -151262936 + L1M4 LINE L1 3211 3564 -2582 1645 135 11 0 chr6 38016636 38016896 -151262658 + MER2 DNA MER2_type 1 263 -82 2510 121 14 3 chr6 38017007 38017378 -151262176 + THE1C LTR MaLR 1 375 0 2324 263 90 25 chr6 38017388 38018520 -151261034 + L1M4 LINE L1 3593 4798 -1348 472 170 16 0 chr6 38018535 38018644 -151260910 - L1 LINE L1 -1079 5067 4954 765 226 30 0 chr6 38018645 38018809 -151260745 - FRAM SINE Alu -7 169 1 319 250 11 11 chr6 38018814 38018906 -151260648 - L1 LINE L1 -1191 4955 4864 * 2967 222 38 148 chr6 38018900 38019085 -151260469 - L1M4c LINE L1 -4573 2073 1869 763 116 7 22 chr6 38019085 38019223 -151260331 - L1MB2 LINE L1 -1 6170 6035 2967 222 38 148 chr6 38019223 38021331 -151258223 - L1M4c LINE L1 -4777 1869 2 522 270 61 86 chr6 38021330 38021549 -151258005 - L1MEc LINE L1 -4535 1861 1657 * 494 149 53 0 chr6 38021549 38021643 -151257911 + L1MA7 LINE L1 6187 6285 -6 522 270 61 86 chr6 38021643 38021867 -151257687 - L1MEc LINE L1 -4739 1657 1429 882 256 68 8 chr6 38022026 38022276 -151257278 + MLT2D LTR ERVL 1 265 -149 1550 208 6 60 chr6 38022277 38022628 -151256926 + MER21-int LTR ERV1 2341 2672 -1519 935 113 21 0 chr6 38022628 38022770 -151256784 + MSTA LTR MaLR 1 145 -283 409 219 0 0 chr6 38022770 38022843 -151256711 + MER21-int LTR ERV1 2667 2739 -1452 406 256 85 16 chr6 38022849 38022978 -151256576 + FRAM SINE Alu 16 153 -13 528 194 22 72 chr6 38022988 38023127 -151256427 + MER21-int LTR ERV1 2742 2873 -1318 2037 149 0 0 chr6 38023132 38023434 -151256120 + AluSx SINE Alu 1 302 -10 1736 243 79 45 chr6 38023485 38023826 -151255728 + MER21-int LTR ERV1 3068 3439 -752 414 0 0 0 chr6 38023826 38023872 -151255682 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1736 243 79 45 chr6 38023872 38024128 -151255426 + MER21-int LTR ERV1 3439 3685 -506 303 231 77 34 chr6 38024131 38024248 -151255306 - HAL1 LINE L1 -586 1921 1800 180 280 67 0 chr6 38024297 38024372 -151255182 - MER5A DNA MER1_type -85 104 25 686 209 0 16 chr6 38024400 38024529 -151255025 - AluJb SINE Alu -30 282 156 1781 203 27 78 chr6 38024594 38024664 -151254890 - L1MB2 LINE L1 -1 6170 6098 691 211 0 0 chr6 38024664 38024797 -151254757 + FLAM_C SINE Alu 1 133 0 1781 203 27 78 chr6 38024797 38025248 -151254306 - L1MB2 LINE L1 -73 6098 5676 259 133 0 83 chr6 38025616 38025676 -151253878 + MLT2B3 LTR ERVL 458 546 -8 304 318 74 33 chr6 38025681 38026175 -151253379 - L2 LINE L2 -132 3181 2666 1509 230 27 29 chr6 38026184 38026628 -151252926 - L1MB2 LINE L1 -799 5347 4905 368 176 27 0 chr6 38027555 38027629 -151251925 - MER20 DNA MER1_type -138 81 6 418 284 143 38 chr6 38027981 38028404 -151251150 + L1MC4 LINE L1 7332 7900 -142 215 170 0 19 chr6 38028431 38028484 -151251070 + (CA)n Simple_repeat Simple_repeat 1 52 0 1073 173 2 0 chr6 38028487 38028688 -151250866 - HUERS-P3 LTR ERV1 -6753 665 595 531 278 43 28 chr6 38028685 38028993 -151250561 - ERVL-C1 LTR ERVL -5377 387 28 * 297 263 68 34 chr6 38029384 38029502 -151250052 + MER58B DNA MER1_type 220 341 0 461 162 40 30 chr6 38030071 38030170 -151249384 + MIR SINE MIR 40 139 -123 300 158 0 0 chr6 38031475 38031532 -151248022 + T-rich Low_complexity Low_complexity 1 57 0 33 43 0 0 chr6 38032890 38032937 -151246617 + AT_rich Low_complexity Low_complexity 1 47 0 256 125 0 0 chr6 38033421 38033461 -151246093 - ERVL-C1 LTR ERVL -5614 40 1 1310 212 52 7 chr6 38033463 38033501 -151246053 - MLT2C1 LTR ERVL -2 395 360 288 0 0 0 chr6 38033501 38033533 -151246021 + (TG)n Simple_repeat Simple_repeat 2 33 0 1310 212 52 7 chr6 38033533 38033763 -151245791 - MLT2C1 LTR ERVL -37 360 115 2274 214 71 28 chr6 38034680 38035259 -151244295 - MLT1E3 LTR MaLR 0 624 21 550 277 7 14 chr6 38035485 38035626 -151243928 - MLT1F1 LTR MaLR -8 559 420 * 557 331 33 3 chr6 38035621 38035926 -151243628 - LTR16B LTR ERVL -56 408 95 1205 323 52 35 chr6 38035966 38036999 -151242555 - ERVL LTR ERVL -433 5221 4171 1615 315 78 53 chr6 38037239 38038586 -151240968 - ERVL LTR ERVL -2238 3526 2146 940 321 39 5 chr6 38038624 38039038 -151240516 - ERVL LTR ERVL -2966 2030 1603 325 339 114 3 chr6 38039439 38039795 -151239759 - L1ME3A LINE L1 -211 5951 5552 463 253 207 6 chr6 38039833 38040007 -151239547 + L2 LINE L2 2042 2250 -1064 461 255 50 108 chr6 38040040 38040318 -151239236 + L1MC4a LINE L1 5513 5774 -2034 294 307 18 37 chr6 38040503 38040666 -151238888 + L1MC4a LINE L1 5876 6035 -1773 24 32 0 0 chr6 38040828 38040859 -151238695 + AT_rich Low_complexity Low_complexity 1 31 0 585 170 38 0 chr6 38041613 38041719 -151237835 + MER5A DNA MER1_type 3 112 -77 681 45 0 0 chr6 38041761 38041850 -151237704 + (TC)n Simple_repeat Simple_repeat 2 90 0 4609 72 2 0 chr6 38042165 38042733 -151236821 - MER61E LTR ERV1 0 569 1 292 348 63 32 chr6 38042734 38042892 -151236662 + L2 LINE L2 3110 3272 0 2254 116 7 3 chr6 38043885 38044188 -151235366 - AluSq SINE Alu -9 304 1 21 36 0 0 chr6 38044203 38044231 -151235323 + AT_rich Low_complexity Low_complexity 1 28 0 299 251 30 90 chr6 38044637 38044741 -151234813 - L1ME LINE L1 -412 5709 5617 2387 99 0 0 chr6 38044741 38045035 -151234519 - AluSg SINE Alu -16 294 1 299 251 30 90 chr6 38045035 38045097 -151234457 - L1ME LINE L1 -504 5617 5553 2483 73 3 0 chr6 38045097 38045398 -151234156 + AluY SINE Alu 1 302 -9 567 290 135 34 chr6 38045421 38046151 -151233403 - L2 LINE L2 -3 3310 2514 1536 179 29 36 chr6 38047197 38047345 -151232209 + AluJo SINE Alu 1 148 -164 381 22 0 0 chr6 38047345 38047391 -151232163 + (CA)n Simple_repeat Simple_repeat 2 47 0 1536 179 29 36 chr6 38047391 38047550 -151232004 + AluJo SINE Alu 148 306 -6 2557 176 111 45 chr6 38048229 38048911 -151230643 - LTR8A LTR ERV1 0 727 1 24 0 0 0 chr6 38049492 38049516 -151230038 + AT_rich Low_complexity Low_complexity 1 24 0 915 203 0 0 chr6 38049516 38049674 -151229880 - FRAM SINE Alu -8 168 11 2000 172 126 20 chr6 38049723 38050183 -151229371 + LTR22 LTR ERVK 1 509 0 1984 128 0 0 chr6 38050318 38050584 -151228970 - AluSq SINE Alu -47 266 1 407 324 0 0 chr6 38050698 38050834 -151228720 + L1ME1 LINE L1 6027 6162 -4 328 253 44 114 chr6 38050843 38051116 -151228438 + L1MC4 LINE L1 7762 8015 -27 2572 53 0 0 chr6 38051120 38051420 -151228134 + AluY SINE Alu 1 300 -11 2212 80 7 3 chr6 38052212 38052499 -151227055 + AluSp SINE Alu 1 288 -25 1072 149 6 6 chr6 38053374 38053535 -151226019 + FRAM SINE Alu 1 160 -16 616 200 50 61 chr6 38053589 38053769 -151225785 - MER5B DNA MER1_type 0 178 1 536 178 9 37 chr6 38053854 38053961 -151225593 - L1MB7 LINE L1 -17 6167 6064 222 150 0 0 chr6 38053971 38054011 -151225543 + (T)n Simple_repeat Simple_repeat 1 40 0 741 71 31 0 chr6 38054011 38054109 -151225445 - HY3 scRNA scRNA 0 101 1 9369 144 24 16 chr6 38057273 38059094 -151220460 - L1MA3 LINE L1 0 6305 4453 2298 116 3 0 chr6 38059094 38059395 -151220159 - AluSp SINE Alu -11 302 1 9369 144 24 16 chr6 38059395 38060306 -151219248 - L1MA3 LINE L1 -1852 4453 3551 2037 178 142 42 chr6 38060300 38060584 -151218970 - L1MB3 LINE L1 -4 6179 5925 * 2287 117 0 3 chr6 38060584 38060892 -151218662 + AluSq SINE Alu 5 311 -2 2037 178 142 42 chr6 38060892 38061167 -151218387 - L1MB3 LINE L1 -258 5925 5679 231 88 0 0 chr6 38061167 38061201 -151218353 + (TG)n Simple_repeat Simple_repeat 1 34 0 2037 178 142 42 chr6 38061201 38061358 -151218196 - L1MB3 LINE L1 -504 5679 5317 887 250 52 32 chr6 38061371 38061719 -151217835 - L1MB3 LINE L1 -893 5253 4899 213 39 0 0 chr6 38064222 38064248 -151215306 + (CTG)n Simple_repeat Simple_repeat 2 27 0 444 286 143 0 chr6 38066988 38067163 -151212391 + MIR SINE MIR 24 223 -39 22 0 0 0 chr6 38067197 38067219 -151212335 + AT_rich Low_complexity Low_complexity 1 22 0 2502 67 3 3 chr6 38067231 38067528 -151212026 + AluSc SINE Alu 1 297 -12 2046 139 0 0 chr6 38067529 38067809 -151211745 - AluSx SINE Alu -32 280 1 222 105 0 0 chr6 38067809 38067847 -151211707 + (TTTTA)n Simple_repeat Simple_repeat 5 42 0 28 29 0 0 chr6 38067865 38067900 -151211654 + AT_rich Low_complexity Low_complexity 1 35 0 521 292 106 20 chr6 38069017 38069462 -151210092 - HAL1 LINE L1 -5 2502 2020 2599 136 46 68 chr6 38069474 38070035 -151209519 - LTR9 LTR ERV1 -63 549 1 447 258 28 70 chr6 38070107 38070320 -151209234 + LTR67 LTR ERVL 250 453 -104 271 311 80 26 chr6 38070650 38070801 -151208753 + MER5B DNA MER1_type 1 159 -19 298 273 68 0 chr6 38070828 38070916 -151208638 + MER5A DNA MER1_type 9 102 -87 2316 254 92 23 chr6 38070996 38072155 -151207399 + L2 LINE L2 2074 3311 -2 230 331 115 15 chr6 38072167 38072297 -151207257 - L3 LINE CR1 -550 1027 885 21 82 0 0 chr6 38075426 38075475 -151204079 + GC_rich Low_complexity Low_complexity 1 49 0 203 318 19 9 chr6 38077275 38077382 -151202172 + CT-rich Low_complexity Low_complexity 5 112 0 807 311 66 17 chr6 38077492 38078071 -151201483 - L1MEc LINE L1 -4155 2241 1635 344 320 46 59 chr6 38078101 38078320 -151201234 - L1ME1 LINE L1 0 6166 5951 1578 271 56 35 chr6 38078385 38079048 -151200506 - L1ME1 LINE L1 -112 6448 5772 230 275 70 28 chr6 38079069 38079211 -151200343 - L1ME1 LINE L1 -1843 4697 4550 770 175 48 0 chr6 38079216 38079342 -151200212 - FLAM_C SINE Alu -1 132 1 5547 94 31 1 chr6 38079438 38080275 -151199279 + L1PA8A LINE L1 5267 6128 -3 3528 70 0 34 chr6 38080303 38080801 -151198753 + L1PA13 LINE L1 5683 6163 0 318 241 47 35 chr6 38080808 38080979 -151198575 - L1ME1 LINE L1 -3898 2642 2471 820 299 52 35 chr6 38080992 38081514 -151198040 + L1MEc LINE L1 1515 2045 -4351 326 206 0 0 chr6 38081523 38081591 -151197963 + L1P LINE L1 3148 3215 -2931 1353 223 7 34 chr6 38081878 38082189 -151197365 + AluJo SINE Alu 1 303 0 21 0 0 0 chr6 38082216 38082237 -151197317 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr6 38082408 38082436 -151197118 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 243 247 0 37 chr6 38082471 38082552 -151197002 - HAL1 LINE L1 -2 2505 2428 598 265 177 8 chr6 38082672 38083061 -151196493 - HAL1 LINE L1 -17 2490 2036 605 227 8 8 chr6 38083153 38083281 -151196273 - FLAM_A SINE Alu -5 128 1 881 225 49 4 chr6 38083336 38083580 -151195974 - HAL1 LINE L1 -723 1784 1530 1666 163 53 25 chr6 38083583 38083866 -151195688 - AluJb SINE Alu -21 291 1 395 250 164 0 chr6 38083946 38084074 -151195480 + L2 LINE L2 2499 2647 -667 2031 112 14 3 chr6 38084158 38084444 -151195110 + AluSq SINE Alu 11 299 -14 352 350 56 0 chr6 38084838 38085018 -151194536 - L1ME LINE L1 -393 5769 5580 765 249 37 58 chr6 38086856 38087266 -151192288 - L1MC5 LINE L1 -476 7485 7085 402 276 125 27 chr6 38087293 38087797 -151191757 + L1ME3A LINE L1 5596 6161 -9 813 257 101 22 chr6 38088083 38088449 -151191105 + ERVL LTR ERVL 3880 4274 -1490 4570 196 17 23 chr6 38088596 38089110 -151190444 + L1P LINE L1 3469 3985 -2161 809 112 0 0 chr6 38089110 38089217 -151190337 + U6 snRNA snRNA 1 107 0 4570 196 17 23 chr6 38089217 38089918 -151189636 + L1P LINE L1 3985 4657 -1489 29 0 0 0 chr6 38089934 38089963 -151189591 + AT_rich Low_complexity Low_complexity 1 29 0 1372 135 18 21 chr6 38090678 38090982 -151188572 + L1MB5 LINE L1 4625 4938 -1208 * 3623 242 40 24 chr6 38090964 38092100 -151187454 + L1M4c LINE L1 742 1895 -4489 2196 181 19 19 chr6 38092100 38092532 -151187022 + L1MB5 LINE L1 5743 6174 0 7579 67 35 4 chr6 38092653 38093630 -151185924 - LTR13 LTR ERVK 0 1007 1 203 261 0 0 chr6 38094246 38094292 -151185262 + (CATA)n Simple_repeat Simple_repeat 2 47 0 950 196 0 0 chr6 38094510 38094668 -151184886 - FAM SINE Alu -17 158 1 21 57 0 0 chr6 38094698 38094733 -151184821 + AT_rich Low_complexity Low_complexity 1 35 0 1792 282 17 8 chr6 38095304 38096093 -151183461 - ERVL-C1 LTR ERVL -4812 952 28 297 263 68 34 chr6 38096484 38096602 -151182952 + MER58B DNA MER1_type 220 341 0 461 162 40 30 chr6 38097171 38097270 -151182284 + MIR SINE MIR 40 139 -123 300 158 0 0 chr6 38098575 38098632 -151180922 + T-rich Low_complexity Low_complexity 1 57 0 33 43 0 0 chr6 38099990 38100037 -151179517 + AT_rich Low_complexity Low_complexity 1 47 0 256 125 0 0 chr6 38100521 38100561 -151178993 - ERVL-C1 LTR ERVL -5614 40 1 1310 212 52 7 chr6 38100563 38100601 -151178953 - MLT2C1 LTR ERVL -2 395 360 288 0 0 0 chr6 38100601 38100633 -151178921 + (TG)n Simple_repeat Simple_repeat 2 33 0 1310 212 52 7 chr6 38100633 38100863 -151178691 - MLT2C1 LTR ERVL -37 360 115 1437 112 15 0 chr6 38101175 38101372 -151178182 - AluY SINE Alu -111 200 1 228 227 0 0 chr6 38101423 38101467 -151178087 - L2 LINE L2 -3 3310 3267 212 361 69 21 chr6 38101663 38101954 -151177600 - L2 LINE L2 -374 2940 2636 1578 211 162 41 chr6 38102923 38103411 -151176143 + MLT1E LTR MaLR 43 589 -4 570 250 118 5 chr6 38104091 38104295 -151175259 + MIR SINE MIR 3 229 -33 229 145 0 58 chr6 38104511 38104580 -151174974 + (CATA)n Simple_repeat Simple_repeat 4 68 0 231 330 0 11 chr6 38104581 38104669 -151174885 + (CA)n Simple_repeat Simple_repeat 2 88 0 2828 29 0 0 chr6 38105160 38105471 -151174083 + AluY SINE Alu 1 311 0 327 96 0 0 chr6 38105836 38105888 -151173666 + (GGA)n Simple_repeat Simple_repeat 1 52 0 291 322 173 0 chr6 38107692 38107900 -151171654 + MIR SINE MIR 8 251 -11 669 349 79 31 chr6 38108954 38109127 -151170427 + L1M4 LINE L1 4097 4260 -1886 342 45 0 0 chr6 38109127 38109171 -151170383 + (TA)n Simple_repeat Simple_repeat 2 45 0 2191 36 0 16 chr6 38109171 38109424 -151170130 - AluY SINE Alu -6 305 57 669 349 79 31 chr6 38109424 38110060 -151169494 + L1M4 LINE L1 4259 4946 -1200 280 298 133 26 chr6 38110246 38110397 -151169157 - ERVL LTR ERVL -3801 1963 1797 209 225 0 0 chr6 38110794 38110834 -151168720 + MER5A DNA MER1_type 150 189 0 433 288 17 28 chr6 38110845 38111022 -151168532 - MER5B DNA MER1_type -3 175 1 347 260 54 39 chr6 38111185 38111389 -151168165 - LTR33 LTR ERVL -312 209 3 250 234 16 0 chr6 38111392 38111456 -151168098 + L1ME3A LINE L1 4093 4157 -1989 266 272 151 20 chr6 38111462 38111767 -151167787 + L1ME3A LINE L1 4259 4603 -1543 549 153 97 0 chr6 38111910 38112034 -151167520 + L1MB7 LINE L1 6036 6171 -13 591 309 94 31 chr6 38112042 38112521 -151167033 + L1ME3A LINE L1 5429 5937 -233 624 224 12 53 chr6 38113000 38113170 -151166384 + MER3 DNA MER1_type 19 181 -28 415 254 8 17 chr6 38113869 38113987 -151165567 - MIR SINE MIR -18 244 128 887 128 43 7 chr6 38114345 38114486 -151165068 - AluJo SINE Alu -45 267 122 2439 129 26 0 chr6 38116123 38116503 -151163051 - MLT1B LTR MaLR 0 390 1 616 221 47 47 chr6 38117547 38117719 -151161835 + MLT1G1 LTR MaLR 11 182 -413 1411 172 109 62 chr6 38117853 38117935 -151161619 - L1M4 LINE L1 -3828 2554 2477 2156 117 0 7 chr6 38117935 38118233 -151161321 - AluSg SINE Alu -14 296 1 1411 172 109 62 chr6 38118233 38118641 -151160913 - L1M4 LINE L1 -3905 2477 2043 1293 253 8 4 chr6 38118642 38118981 -151160573 - MLT2C1 LTR ERVL -99 298 1 2996 205 34 56 chr6 38118988 38119402 -151160152 - ERVL-C1 LTR ERVL -16 5748 5356 1645 169 11 18 chr6 38119402 38119720 -151159834 - AluJb SINE Alu 0 316 1 2996 205 34 56 chr6 38119720 38120078 -151159476 - ERVL-C1 LTR ERVL -408 5356 4992 1829 178 49 40 chr6 38120078 38120546 -151159008 + L1P3 LINE L1 1328 2505 -5079 * 9324 205 7 9 chr6 38120545 38122455 -151157099 + L1P3 LINE L1 2733 4638 -2946 2226 100 10 3 chr6 38122456 38122755 -151156799 - AluSq SINE Alu -12 301 1 6072 98 34 8 chr6 38122756 38122884 -151156670 + L1PA13 LINE L1 4603 4726 -1437 2135 128 0 7 chr6 38122884 38123181 -151156373 - AluSg SINE Alu -13 297 3 6072 98 34 8 chr6 38123181 38124584 -151154970 + L1PA13 LINE L1 4726 6163 0 495 226 19 0 chr6 38124587 38124693 -151154861 - ERVL LTR ERVL -3552 2212 2105 885 189 27 0 chr6 38124714 38124899 -151154655 - L1 LINE L1 -2688 4160 3971 1957 181 41 102 chr6 38124912 38125464 -151154090 - LTR10E LTR ERV1 -42 591 79 2017 100 0 63 chr6 38125464 38125794 -151153760 - AluSg SINE Alu 0 311 1 1957 181 41 102 chr6 38125794 38125869 -151153685 - LTR10E LTR ERV1 -554 79 1 13200 267 69 69 chr6 38125872 38126420 -151153134 - HERVI LTR ERV1 -1 7784 7237 5562 75 14 21 chr6 38126420 38127184 -151152370 + SVA Other Other 627 1385 -1 13200 267 69 69 chr6 38127184 38127243 -151152311 - HERVI LTR ERV1 -548 7237 7179 2118 101 47 0 chr6 38127243 38127521 -151152033 - AluSg SINE Alu -19 291 1 13200 267 69 69 chr6 38127521 38134564 -151144990 - HERVI LTR ERV1 -606 7179 26 2043 173 49 103 chr6 38134605 38135218 -151144336 - LTR10E LTR ERV1 -42 591 12 8349 214 36 21 chr6 38135228 38136376 -151143178 - L1 LINE L1 -2873 3975 2845 3805 96 2 4 chr6 38136376 38136888 -151142666 - MER9 LTR ERVK 0 511 1 8349 214 36 21 chr6 38136888 38137334 -151142220 - L1 LINE L1 -4003 2845 2407 2237 113 0 28 chr6 38137334 38137652 -151141902 + AluSc SINE Alu 1 309 0 8349 214 36 21 chr6 38137652 38139075 -151140479 - L1 LINE L1 -4441 2407 913 331 26 0 0 chr6 38139208 38139247 -151140307 + (TTTG)n Simple_repeat Simple_repeat 2 168 0 2057 128 3 3 chr6 38139247 38139529 -151140025 - AluSg SINE Alu -1 320 1 345 186 44 62 chr6 38139547 38139660 -151139894 + L1MA7 LINE L1 6178 6288 -3 309 316 23 8 chr6 38139676 38139809 -151139745 - L1MDa LINE L1 -4631 1909 1775 7441 48 2 0 chr6 38140053 38141185 -151138369 + L1PA5 LINE L1 5020 6153 -1 875 282 8 8 chr6 38141185 38141437 -151138117 + MLT2D LTR ERVL 14 265 -149 1369 223 6 57 chr6 38141438 38141788 -151137766 + MER21-int LTR ERV1 2341 2672 -1519 629 218 14 27 chr6 38141788 38141935 -151137619 + MSTA LTR MaLR 1 145 -283 347 260 0 0 chr6 38141935 38142008 -151137546 + MER21-int LTR ERV1 2667 2739 -1452 428 266 63 0 chr6 38142014 38142157 -151137397 + FRAM SINE Alu 16 167 -9 1164 264 17 43 chr6 38142167 38142479 -151137075 + MER21-int LTR ERV1 2742 3046 -1145 4449 169 18 17 chr6 38142479 38143261 -151136293 - LTR39 LTR ERV1 0 783 1 1164 264 17 43 chr6 38143261 38143296 -151136258 + MER21-int LTR ERV1 3046 3080 -1111 776 43 0 0 chr6 38143296 38143388 -151136166 - MER9 LTR ERVK -419 92 1 5112 189 39 27 chr6 38143391 38143834 -151135720 - L1M2 LINE L1 -4025 2824 2388 2215 116 0 28 chr6 38143834 38144152 -151135402 + AluSc SINE Alu 1 309 0 5112 189 39 27 chr6 38144152 38144962 -151134592 - L1M2 LINE L1 -4461 2388 1556 * 40959 75 4 6 chr6 38144958 38150309 -151129245 - L1P LINE L1 -793 5353 11 1566 217 3 3 chr6 38150412 38150707 -151128847 + AluJo SINE Alu 1 295 -17 1802 247 4 43 chr6 38150765 38151230 -151128324 + MER21B LTR ERV1 19 465 -398 598 273 132 41 chr6 38151231 38151550 -151128004 + MSTD LTR MaLR 1 348 -17 1876 149 8 62 chr6 38151561 38151917 -151127637 + MER1B DNA MER1_type 1 337 0 1526 173 17 88 chr6 38151953 38152544 -151127010 + MER4A LTR ERV1 1 465 0 914 249 51 33 chr6 38152557 38152830 -151126724 + MER21B LTR ERV1 505 782 -81 4804 55 12 14 chr6 38152861 38153896 -151125658 - MER11A LTR ERVK 0 1266 1 23 0 0 0 chr6 38154142 38154165 -151125389 + AT_rich Low_complexity Low_complexity 1 23 0 3202 128 20 49 chr6 38154523 38155153 -151124401 - MER4B LTR ERV1 0 779 1 358 156 89 44 chr6 38155277 38155367 -151124187 - LTR19C LTR ERV1 0 779 686 1647 110 10 93 chr6 38155368 38155669 -151123885 - LTR9 LTR ERV1 -336 276 1 451 289 21 84 chr6 38155674 38155961 -151123593 + LTR67 LTR ERVL 185 453 -104 242 287 64 11 chr6 38156450 38156544 -151123010 + MER5A DNA MER1_type 4 102 -87 1664 252 111 26 chr6 38156647 38157702 -151121852 + L2 LINE L2 2107 3252 -61 949 318 46 17 chr6 38163152 38163743 -151115811 - L1MEc LINE L1 -4155 2241 1634 244 271 31 21 chr6 38163933 38164029 -151115525 + C-rich Low_complexity Low_complexity 4 100 0 1982 238 60 41 chr6 38164053 38164717 -151114837 - L1ME1 LINE L1 -112 6054 5378 268 297 31 31 chr6 38164738 38164866 -151114688 - L1ME1 LINE L1 -1843 4303 4176 750 157 36 29 chr6 38164874 38165014 -151114540 - FLAM_C SINE Alu 0 143 3 926 62 16 0 chr6 38165081 38165210 -151114344 + L1PA8A LINE L1 5267 5397 -734 242 301 6 54 chr6 38166472 38166638 -151112916 + A-rich Low_complexity Low_complexity 1 158 0 5261 93 21 3 chr6 38169061 38169789 -151109765 + L1PA8A LINE L1 5388 6128 -3 872 87 10 1 chr6 38169797 38169926 -151109628 + L1PA13 LINE L1 5655 5790 -373 2852 72 0 41 chr6 38171215 38171630 -151107924 + L1PA13 LINE L1 5766 6163 0 930 278 53 60 chr6 38171831 38172095 -151107459 + L1MEc LINE L1 1516 1776 -4620 2432 18 0 18 chr6 38172095 38172377 -151107177 + AluY SINE Alu 35 311 0 930 278 53 60 chr6 38172377 38172641 -151106913 + L1MEc LINE L1 1776 2040 -4356 342 92 46 15 chr6 38172654 38172719 -151106835 + L1P LINE L1 3148 3214 -2932 212 57 0 29 chr6 38172719 38172754 -151106800 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1403 201 14 27 chr6 38173043 38173336 -151106218 + AluJo SINE Alu 1 289 -23 1834 54 13 5 chr6 38173640 38173864 -151105690 - AluY SINE Alu -85 226 1 974 208 34 78 chr6 38174639 38175024 -151104530 - L1MC5 LINE L1 -509 7452 7085 697 271 174 12 chr6 38175069 38175397 -151104157 + L1ME3A LINE L1 5615 5995 -175 431 284 50 58 chr6 38179106 38179483 -151100071 - L1ME LINE L1 -4863 1679 1306 308 343 17 42 chr6 38179469 38179705 -151099849 - L1ME LINE L1 -5589 1045 816 * 288 200 62 0 chr6 38180114 38180194 -151099360 - L1ME LINE L1 -5937 697 613 1817 170 0 7 chr6 38180359 38180653 -151098901 + AluJb SINE Alu 1 292 -20 423 0 0 0 chr6 38181288 38181335 -151098219 + (TG)n Simple_repeat Simple_repeat 1 47 0 593 288 82 29 chr6 38181399 38181724 -151097830 + MERVL LTR ERVL 3330 3633 -2021 480 318 34 17 chr6 38181764 38181997 -151097557 + MERVL LTR ERVL 3739 3975 -1789 420 299 112 74 chr6 38182354 38182990 -151096564 + L1MEd LINE L1 431 1090 -5029 386 293 30 96 chr6 38183684 38183954 -151095600 + MIR SINE MIR 11 262 0 618 219 40 61 chr6 38185378 38185656 -151093898 + L1MB8 LINE L1 4140 4411 -1735 3237 207 61 24 chr6 38185658 38186972 -151092582 + L1MB8 LINE L1 4806 6162 -16 2748 199 8 4 chr6 38187838 38188336 -151091218 + MLT1D LTR MaLR 1 500 -5 322 273 11 23 chr6 38188630 38188718 -151090836 - MLT2E LTR ERVL -510 118 32 4207 72 2 2 chr6 38188993 38189532 -151090022 - L1PA8 LINE L1 -5 6167 5629 423 327 34 17 chr6 38190704 38191099 -151088455 + MERVL LTR ERVL 3792 4246 -1518 1435 102 32 0 chr6 38191271 38191458 -151088096 - AluSq SINE Alu -120 193 1 1372 183 88 111 chr6 38191495 38191971 -151087583 - MER4C LTR ERV1 0 465 1 925 229 10 0 chr6 38191975 38192176 -151087378 - MER4C-int LTR ERV1 -1 6597 6395 262 246 33 57 chr6 38192205 38192327 -151087227 - MER4C-int LTR ERV1 -170 6428 6310 394 228 150 0 chr6 38192331 38192458 -151087096 - MER4C LTR ERV1 -205 260 158 5693 116 45 42 chr6 38192508 38192896 -151086658 - LTR49-int LTR ERV1 -520 5811 5426 2174 102 7 3 chr6 38192896 38193190 -151086364 - AluSp SINE Alu -18 295 1 5693 116 45 42 chr6 38193190 38193646 -151085908 - LTR49-int LTR ERV1 -905 5426 4961 2332 102 0 0 chr6 38193646 38193949 -151085605 + AluSg SINE Alu 1 303 -7 5693 116 45 42 chr6 38193949 38194140 -151085414 - LTR49-int LTR ERV1 -1370 4961 4772 2107 104 7 7 chr6 38194141 38194448 -151085106 + AluSg SINE Alu 1 307 0 838 184 18 64 chr6 38194450 38194668 -151084886 - LTR49-int LTR ERV1 -1969 2911 2704 1824 110 4 4 chr6 38194676 38194922 -151084632 - AluSc SINE Alu -63 246 1 1208 218 66 122 chr6 38194922 38195482 -151084072 - LTR49-int LTR ERV1 -3538 2408 1818 2485 93 0 0 chr6 38195482 38195792 -151083762 + AluSg SINE Alu 1 310 0 1208 218 66 122 chr6 38195792 38196097 -151083457 - LTR49-int LTR ERV1 -4128 1818 1001 2295 74 25 3 chr6 38196159 38196443 -151083111 - AluSc SINE Alu -19 290 1 620 148 87 54 chr6 38196455 38196604 -151082950 - LTR49-int LTR ERV1 -5184 1147 994 258 156 22 0 chr6 38196621 38196666 -151082888 - LTR49 LTR ERV1 -287 308 263 3348 78 41 0 chr6 38197284 38197719 -151081835 + MLT2A2 LTR ERVL 1 453 0 2227 104 3 0 chr6 38197906 38198204 -151081350 - AluSp SINE Alu -14 299 1 289 348 0 0 chr6 38199067 38199156 -151080398 - MER82 DNA MER2_type -61 592 504 2409 74 14 0 chr6 38199497 38199793 -151079761 - AluY SINE Alu -11 300 1 8673 219 48 25 chr6 38199793 38200640 -151078914 - HERV3 LTR ERV1 -1084 7342 6516 2592 40 0 13 chr6 38200640 38200942 -151078612 - AluY SINE Alu -13 298 1 8673 219 48 25 chr6 38200942 38201922 -151077632 - HERV3 LTR ERV1 -1910 6516 5469 1143 178 12 89 chr6 38201923 38202044 -151077510 - LTR61 LTR ERV1 -329 266 174 2348 90 0 0 chr6 38202044 38202333 -151077221 + AluY SINE Alu 1 289 -22 1143 178 12 89 chr6 38202333 38202469 -151077085 - LTR61 LTR ERV1 -421 174 29 183 42 0 0 chr6 38202469 38202493 -151077061 + (TTA)n Simple_repeat Simple_repeat 1 24 0 957 311 44 21 chr6 38202624 38203058 -151076496 + LTR33 LTR ERVL 10 453 -68 2291 92 7 0 chr6 38203061 38203355 -151076199 + AluSp SINE Alu 1 296 -17 225 91 0 0 chr6 38203356 38203389 -151076165 + LTR33 LTR ERVL 485 517 -4 2241 99 17 3 chr6 38204082 38204384 -151075170 - AluSq SINE Alu -7 306 1 553 130 98 0 chr6 38204777 38204900 -151074654 + L1MB7 LINE L1 6037 6171 -13 537 267 144 25 chr6 38204913 38205354 -151074200 + L1ME3A LINE L1 5434 5937 -233 561 234 22 54 chr6 38205821 38206005 -151073549 + MER3 DNA MER1_type 4 181 -28 694 132 9 9 chr6 38206022 38206136 -151073418 - MER9 LTR ERVK 0 511 398 3674 96 8 6 chr6 38206138 38206651 -151072903 - HERVK9 LTR ERVK -821 5095 4582 1842 70 4 0 chr6 38206650 38206880 -151072674 - HERVK9 LTR ERVK -1975 3941 3711 * 20385 78 4 9 chr6 38206881 38209626 -151069928 - HERVK9 LTR ERVK -3131 2785 1 3674 113 0 6 chr6 38209626 38210140 -151069414 - MER9 LTR ERVK 0 511 1 1736 104 0 0 chr6 38210449 38210730 -151068824 - AluSg/x SINE Alu 0 346 66 2235 98 34 0 chr6 38210956 38211253 -151068301 + AluSx SINE Alu 1 307 -5 952 161 6 12 chr6 38211315 38211476 -151068078 - FRAM SINE Alu -17 159 1 23 0 0 0 chr6 38211806 38211829 -151067725 + AT_rich Low_complexity Low_complexity 1 23 0 2092 137 7 7 chr6 38213564 38213894 -151065660 + AluSx SINE Alu 1 312 0 2018 144 0 7 chr6 38214180 38214478 -151065076 - AluSq SINE Alu -17 296 1 2243 154 21 5 chr6 38214891 38215275 -151064279 - MLT1B LTR MaLR 0 390 1 648 70 0 0 chr6 38215300 38215386 -151064168 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2280 120 0 0 chr6 38215398 38215706 -151063848 - AluSx SINE Alu -4 308 1 597 286 40 0 chr6 38216746 38216921 -151062633 + MLT1G1 LTR MaLR 11 192 -403 1681 186 73 13 chr6 38217046 38217525 -151062029 - L1M4 LINE L1 -3828 3020 2513 1373 243 48 6 chr6 38217531 38217864 -151061690 - MLT2C2 LTR ERVL -116 348 2 3755 211 19 34 chr6 38217867 38218299 -151061255 - ERVL-C2 LTR ERVL -7 5757 5342 1572 190 11 18 chr6 38218299 38218617 -151060937 - AluJb SINE Alu 0 316 1 3755 211 19 34 chr6 38218617 38219064 -151060490 - ERVL-C2 LTR ERVL -422 5342 4890 16052 203 23 20 chr6 38219066 38222838 -151056716 + L1PA12 LINE L1 1328 5902 -1682 684 265 132 0 chr6 38222837 38223026 -151056528 - L1M4 LINE L1 -5705 1144 931 * 443 172 54 0 chr6 38223218 38223311 -151056243 + L1MA7 LINE L1 6188 6285 -6 400 327 65 5 chr6 38223324 38223523 -151056031 - L1MEc LINE L1 -4763 1633 1423 1003 255 19 15 chr6 38223682 38223945 -151055609 + MLT2D LTR ERVL 1 264 -150 1423 224 6 54 chr6 38223947 38224296 -151055258 + MER21-int LTR ERV1 2341 2672 -1519 765 168 22 0 chr6 38224296 38224433 -151055121 + MSTA LTR MaLR 1 140 -288 435 200 0 0 chr6 38224436 38224511 -151055043 + MER21-int LTR ERV1 2665 2739 -1452 373 287 70 0 chr6 38224517 38224646 -151054908 + FRAM SINE Alu 16 153 -13 1811 248 50 48 chr6 38224646 38224977 -151054577 + MER21-int LTR ERV1 2728 3062 -1129 4746 164 13 3 chr6 38224977 38225752 -151053802 - LTR39 LTR ERV1 0 783 1 1811 248 50 48 chr6 38225752 38226004 -151053550 + MER21-int LTR ERV1 3062 3312 -879 2493 200 39 16 chr6 38226103 38226667 -151052887 + MER21-int LTR ERV1 3463 4039 -152 27636 48 3 3 chr6 38226682 38227056 -151052498 - L1PA6 LINE L1 -4 6150 5777 2372 92 3 3 chr6 38227056 38227362 -151052192 - AluY SINE Alu -5 306 1 27636 48 3 3 chr6 38227362 38231146 -151048408 - L1PA6 LINE L1 -377 5777 1993 748 95 0 0 chr6 38231153 38231248 -151048306 - AluY SINE Alu -161 150 56 1278 141 5 10 chr6 38231255 38231447 -151048107 - AluSx SINE Alu -121 191 1 2196 104 3 0 chr6 38231459 38231761 -151047793 - AluSp SINE Alu 0 303 1 1285 73 6 0 chr6 38231834 38231998 -151047556 - L1PA8 LINE L1 -14 6158 5994 1874 144 35 3 chr6 38232000 38232284 -151047270 - AluSx SINE Alu -18 294 2 45 0 0 0 chr6 38232284 38232329 -151047225 + AT_rich Low_complexity Low_complexity 1 45 0 1003 209 118 31 chr6 38232329 38232520 -151047034 - L1ME2 LINE L1 -2 6162 5989 2245 108 3 0 chr6 38232520 38232816 -151046738 - AluSx SINE Alu -15 297 1 1003 209 118 31 chr6 38232816 38232945 -151046609 - L1ME2 LINE L1 -175 5989 5814 1163 124 26 26 chr6 38232954 38233147 -151046407 - AluSc SINE Alu -15 294 102 948 103 0 0 chr6 38233147 38233273 -151046281 + AluSp/q SINE Alu 166 291 -22 564 257 158 0 chr6 38233273 38233425 -151046129 + FRAM SINE Alu 1 40 0 2014 109 14 3 chr6 38233530 38233813 -151045741 - AluSx SINE Alu -23 289 4 2337 90 0 7 chr6 38233858 38234158 -151045396 - AluSg SINE Alu -12 298 1 2550 61 0 0 chr6 38234332 38234629 -151044925 + AluY SINE Alu 1 297 -14 1846 149 20 23 chr6 38234652 38234953 -151044601 - AluSx SINE Alu -12 300 1 2024 129 27 0 chr6 38234975 38235269 -151044285 - AluSq SINE Alu -11 302 1 2076 127 3 10 chr6 38235426 38235733 -151043821 - AluSx SINE Alu -7 305 1 990 159 0 6 chr6 38235733 38235896 -151043658 - AluSg/x SINE Alu -6 304 143 501 169 8 85 chr6 38236347 38236422 -151043132 + MER5A DNA MER1_type 1 65 -124 2350 82 0 3 chr6 38236422 38236738 -151042816 + AluSq SINE Alu 1 313 0 501 169 8 85 chr6 38236738 38236780 -151042774 + MER5A DNA MER1_type 65 109 -80 348 335 46 57 chr6 38237027 38237308 -151042246 + L2 LINE L2 2994 3271 -1 24 53 0 0 chr6 38237817 38237855 -151041699 + AT_rich Low_complexity Low_complexity 1 38 0 4101 138 17 124 chr6 38237891 38239435 -151040119 + pTR5 LTR ERV1 744 2606 0 667 119 10 0 chr6 38239476 38239577 -151039977 - FRAM SINE Alu -34 142 41 2140 79 18 0 chr6 38239854 38240132 -151039422 - AluSx SINE Alu -29 283 1 2211 107 7 7 chr6 38241036 38241346 -151038208 - AluSx SINE Alu -2 310 1 1820 151 10 16 chr6 38241378 38241682 -151037872 + AluJb SINE Alu 1 302 -10 216 97 0 0 chr6 38241684 38241715 -151037839 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 2221 107 4 0 chr6 38241805 38242086 -151037468 + AluSq SINE Alu 14 295 -18 1179 224 28 50 chr6 38242792 38243114 -151036440 + MLT1A2 LTR MaLR 56 370 -4 423 192 98 62 chr6 38243192 38243385 -151036169 - L2 LINE L2 0 3313 3114 2214 108 0 0 chr6 38243402 38243679 -151035875 + AluSg SINE Alu 2 278 -32 195 42 0 0 chr6 38243688 38243712 -151035842 + (TA)n Simple_repeat Simple_repeat 2 25 0 1049 259 108 9 chr6 38243716 38244187 -151035367 - MLT1G1 LTR MaLR -57 498 15 344 265 70 32 chr6 38244194 38244232 -151035322 - L2 LINE L2 -163 3150 3115 2402 103 0 3 chr6 38244232 38244542 -151035012 + AluSc SINE Alu 1 309 0 344 265 70 32 chr6 38244542 38244688 -151034866 - L2 LINE L2 -198 3115 2959 3684 130 18 12 chr6 38246059 38246657 -151032897 + LTR43 LTR ERV1 1 602 0 15694 2 0 7 chr6 38246657 38246999 -151032555 + LTR43-int LTR ERV1 1 344 -4454 2377 99 0 3 chr6 38246999 38247302 -151032252 - AluSg SINE Alu -7 303 2 15694 2 0 7 chr6 38247302 38247943 -151031611 + LTR43-int LTR ERV1 344 988 -3810 2292 94 7 0 chr6 38247943 38248229 -151031325 + AluSp SINE Alu 5 292 -21 15694 2 0 7 chr6 38248229 38248844 -151030710 + LTR43-int LTR ERV1 988 1588 -3210 2282 110 0 7 chr6 38248844 38249144 -151030410 - AluSx SINE Alu -14 298 1 15694 2 0 7 chr6 38249144 38249347 -151030207 + LTR43-int LTR ERV1 1588 1791 -3007 476 145 261 29 chr6 38250504 38250642 -151028912 - MIR SINE MIR -1 261 92 903 102 8 16 chr6 38250643 38250770 -151028784 + AluJb SINE Alu 1 126 -186 2323 92 0 16 chr6 38250792 38251096 -151028458 + AluSg SINE Alu 3 301 -9 300 188 0 0 chr6 38251097 38251145 -151028409 - MIR SINE MIR -163 99 52 2389 101 7 0 chr6 38251192 38251498 -151028056 + AluSg SINE Alu 1 308 -2 2513 77 0 0 chr6 38256705 38257002 -151022552 + AluSg SINE Alu 2 298 -12 507 115 48 29 chr6 38257440 38257544 -151022010 + MER50 LTR ERV1 499 604 -130 667 164 0 9 chr6 38257572 38257682 -151021872 + FLAM_C SINE Alu 2 110 -33 25 0 0 0 chr6 38257713 38257738 -151021816 + AT_rich Low_complexity Low_complexity 1 25 0 2190 130 3 0 chr6 38257756 38258056 -151021498 + AluSx SINE Alu 3 303 -9 1988 118 33 0 chr6 38258290 38258562 -151020992 - AluSx SINE Alu -31 281 1 2110 77 19 0 chr6 38258567 38258828 -151020726 - AluSp SINE Alu -14 299 34 389 234 311 22 chr6 38258839 38259061 -151020493 - L2 LINE L2 -609 2705 2420 355 238 234 13 chr6 38259062 38259289 -151020265 - L2 LINE L2 -1042 2272 1996 258 266 73 16 chr6 38259459 38259583 -151019971 + MIR SINE MIR 131 261 -1 1695 189 7 7 chr6 38261219 38261521 -151018033 - AluJo SINE Alu -10 302 1 438 211 114 63 chr6 38264629 38264804 -151014750 + MIR3 SINE MIR 7 190 -18 1598 115 0 100 chr6 38265038 38265317 -151014237 + AluSx SINE Alu 1 251 -61 365 310 65 32 chr6 38266563 38266779 -151012775 + MIR SINE MIR 40 262 0 2264 73 7 0 chr6 38266994 38267266 -151012288 + AluSq SINE Alu 1 274 -39 2538 72 0 7 chr6 38267374 38267680 -151011874 - AluY SINE Alu -7 304 1 327 257 152 86 chr6 38268396 38268653 -151010901 + L2 LINE L2 2175 2448 -866 402 325 103 34 chr6 38269151 38269529 -151010025 + L2 LINE L2 2458 2861 -453 1407 101 0 11 chr6 38269952 38270140 -151009414 + AluSg/x SINE Alu 99 284 -26 300 186 0 0 chr6 38270140 38270199 -151009355 + (TA)n Simple_repeat Simple_repeat 1 59 0 1642 163 7 24 chr6 38270235 38270523 -151009031 - AluJb SINE Alu -14 298 16 2417 47 0 20 chr6 38271280 38271577 -151007977 + AluY SINE Alu 1 291 -20 1666 75 133 61 chr6 38271589 38271867 -151007687 + AluSx SINE Alu 1 298 -14 1445 92 0 5 chr6 38271941 38272163 -151007391 - AluSq SINE Alu 0 327 107 321 26 0 0 chr6 38272168 38272206 -151007348 + (TA)n Simple_repeat Simple_repeat 1 38 0 3710 128 28 0 chr6 38272206 38272777 -151006777 - Harlequin LTR ERV1 -424 6472 5886 * 14787 81 13 3 chr6 38272771 38274788 -151004766 - Harlequin LTR ERV1 -1509 5387 3352 6627 41 39 9 chr6 38274787 38275761 -151003793 - Harlequin LTR ERV1 -4322 2574 1572 * 6224 70 37 16 chr6 38275746 38276630 -151002924 - Harlequin LTR ERV1 -5993 903 1 * 3764 52 23 0 chr6 38276630 38277109 -151002445 - LTR2B LTR ERV1 0 490 1 450 207 0 5 chr6 38277127 38277234 -151002320 + L1PA15 LINE L1 6025 6129 -36 2357 113 0 0 chr6 38277244 38277553 -151002001 + AluSx SINE Alu 1 309 -3 2221 86 31 7 chr6 38277751 38278043 -151001511 - AluSx SINE Alu -13 299 1 530 167 0 0 chr6 38278047 38278149 -151001405 - L1PA15 LINE L1 -13 6152 6051 2450 71 0 3 chr6 38278417 38278711 -151000843 - AluY SINE Alu -16 295 3 2155 123 3 26 chr6 38278724 38279033 -151000521 - AluY SINE Alu -9 302 1 1078 109 0 27 chr6 38279033 38279169 -151000385 - AluSq/x SINE Alu -179 134 1 2231 109 3 0 chr6 38279190 38279483 -151000071 - AluSp SINE Alu -19 294 1 53 30 0 0 chr6 38279485 38279552 -151000002 + AT_rich Low_complexity Low_complexity 1 67 0 1218 78 6 0 chr6 38279553 38279720 -150999834 - L1PA8 LINE L1 -11 6161 5994 879 138 0 0 chr6 38279722 38279845 -150999709 - AluSg/x SINE Alu -18 292 170 1453 122 10 0 chr6 38279845 38280050 -150999504 + AluSg/x SINE Alu 87 293 -19 432 0 0 0 chr6 38282633 38282681 -150996873 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1747 86 0 0 chr6 38282702 38282911 -150996643 + AluSq SINE Alu 82 290 -23 274 295 6 66 chr6 38282936 38283102 -150996452 + L2 LINE L2 3095 3250 -63 219 291 105 12 chr6 38283482 38283568 -150995986 - MIR3 SINE MIR -112 96 3 264 290 97 35 chr6 38283934 38284079 -150995475 + L2 LINE L2 3119 3272 0 261 287 70 9 chr6 38284673 38284788 -150994766 + MIR SINE MIR 32 153 -109 221 308 77 11 chr6 38284792 38284883 -150994671 - L2 LINE L2 -20 3252 3156 1093 142 0 12 chr6 38285030 38285192 -150994362 + AluJb SINE Alu 134 293 -19 180 0 0 0 chr6 38285192 38285212 -150994342 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1582 154 57 57 chr6 38285351 38285500 -150994054 - AluJo SINE Alu -14 298 150 2289 59 42 7 chr6 38285500 38285788 -150993766 - AluY SINE Alu -12 299 2 1582 154 57 57 chr6 38285788 38285936 -150993618 - AluJo SINE Alu -161 151 1 810 175 7 14 chr6 38285937 38286080 -150993474 - FLAM_A SINE Alu 0 142 1 254 174 0 0 chr6 38286084 38286140 -150993414 - FLAM_A SINE Alu -2 131 87 2343 97 0 19 chr6 38286400 38286711 -150992843 + AluSg SINE Alu 1 305 -5 505 243 112 56 chr6 38286719 38286933 -150992621 + MIR SINE MIR 6 231 -31 351 175 16 0 chr6 38286978 38287041 -150992513 - LTR16C LTR ERVL -2 489 426 1710 150 62 0 chr6 38287054 38287328 -150992226 + AluJb SINE Alu 1 291 -21 2272 108 0 3 chr6 38287330 38287618 -150991936 + AluSx SINE Alu 1 287 -25 234 0 0 0 chr6 38287621 38287647 -150991907 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1969 169 3 0 chr6 38287658 38287953 -150991601 + AluJo SINE Alu 1 296 -16 21 36 0 0 chr6 38288854 38288882 -150990672 + AT_rich Low_complexity Low_complexity 1 28 0 2352 95 0 7 chr6 38289064 38289368 -150990186 - AluSx SINE Alu -7 305 4 2569 60 0 10 chr6 38289381 38289695 -150989859 - AluY SINE Alu 0 311 1 375 167 39 212 chr6 38289871 38289912 -150989642 - Charlie2 DNA MER1_type -28 2834 2788 1888 157 7 3 chr6 38289912 38290206 -150989348 - AluJb SINE Alu -17 295 1 375 167 39 212 chr6 38290206 38290311 -150989243 - Charlie2 DNA MER1_type -74 2788 2765 1864 105 82 8 chr6 38290311 38290607 -150988947 - AluSx SINE Alu 0 316 1 375 167 39 212 chr6 38290607 38290768 -150988786 - Charlie2 DNA MER1_type -97 2765 2578 1710 154 19 68 chr6 38290845 38291170 -150988384 + AluJb SINE Alu 1 309 -3 2163 137 0 13 chr6 38291195 38291510 -150988044 + AluSx SINE Alu 1 311 -1 382 237 0 0 chr6 38291634 38291710 -150987844 - Charlie2 DNA MER1_type -2761 101 26 2452 78 7 0 chr6 38291959 38292266 -150987288 + AluSg SINE Alu 1 309 -1 * 2556 52 10 3 chr6 38292265 38292573 -150986981 + AluY SINE Alu 1 310 -1 197 0 71 0 chr6 38293443 38293471 -150986083 + (CCCCAG)n Simple_repeat Simple_repeat 1 30 0 208 304 43 0 chr6 38295060 38295129 -150984425 + L2 LINE L2 2301 2372 -942 182 265 125 73 chr6 38295286 38295422 -150984132 + L2 LINE L2 2572 2714 -600 2397 73 7 20 chr6 38295426 38295726 -150983828 + AluSp SINE Alu 1 296 -17 396 168 126 2 chr6 38295731 38295813 -150983741 + AluJ/FLAM SINE Alu 1 79 -223 1420 146 39 39 chr6 38296166 38296420 -150983134 - AluJo SINE Alu -32 280 27 1017 63 24 0 chr6 38296420 38296546 -150983008 + AluSp/q SINE Alu 167 295 -18 2276 115 3 3 chr6 38296594 38296906 -150982648 - AluSx SINE Alu 0 312 1 181 247 253 47 chr6 38297042 38297212 -150982342 + L2 LINE L2 3001 3205 -108 376 281 126 61 chr6 38298728 38298867 -150980687 + L1MC4 LINE L1 7716 7845 -197 2171 113 3 0 chr6 38298867 38299160 -150980394 + AluSc SINE Alu 6 299 -10 376 281 126 61 chr6 38299160 38299283 -150980271 + L1MC4 LINE L1 7845 7995 -47 1836 164 0 3 chr6 38299285 38299578 -150979976 - AluSx SINE Alu -20 292 1 338 148 16 0 chr6 38299578 38299639 -150979915 + L1ME3A LINE L1 6043 6104 -66 2148 119 7 3 chr6 38301147 38301449 -150978105 + AluSx SINE Alu 1 303 -9 2404 82 0 3 chr6 38302202 38302496 -150977058 + AluSg SINE Alu 1 293 -17 2195 94 7 42 chr6 38302755 38303064 -150976490 + AluSx SINE Alu 1 298 -14 2451 94 0 3 chr6 38303946 38304253 -150975301 + AluSx SINE Alu 7 312 0 248 179 0 54 chr6 38304400 38304456 -150975098 + L2 LINE L2 3015 3067 -246 1751 152 3 21 chr6 38304499 38304788 -150974766 - AluJb SINE Alu -4 308 25 638 94 0 0 chr6 38304792 38304877 -150974677 + AluS SINE Alu 3 87 -225 364 268 256 6 chr6 38304908 38305072 -150974482 + L2 LINE L2 3106 3310 -3 274 244 171 8 chr6 38306354 38306477 -150973077 + L2 LINE L2 2496 2638 -676 256 285 130 40 chr6 38306672 38306872 -150972682 + L2 LINE L2 3024 3241 -72 192 261 0 0 chr6 38307035 38307081 -150972473 + L2 LINE L2 2701 2746 -568 2420 56 49 0 chr6 38307084 38307372 -150972182 + AluY SINE Alu 1 302 -9 2307 125 0 0 chr6 38307406 38307710 -150971844 - AluSx SINE Alu -8 304 1 827 118 0 8 chr6 38307728 38307847 -150971707 - FLAM_C SINE Alu -15 118 1 1758 120 80 11 chr6 38308069 38308345 -150971209 - AluSx SINE Alu -17 295 1 490 292 84 34 chr6 38308350 38308646 -150970908 - L1M LINE L1 -813 5333 5039 2345 103 0 0 chr6 38308651 38308942 -150970612 - AluSg SINE Alu -17 293 3 209 295 49 98 chr6 38308964 38309147 -150970407 + L2 LINE L2 3024 3197 -75 21 0 0 0 chr6 38310210 38310231 -150969323 + AT_rich Low_complexity Low_complexity 1 21 0 2585 66 0 0 chr6 38310387 38310689 -150968865 + AluY SINE Alu 1 302 -9 1672 184 21 0 chr6 38310871 38311153 -150968401 - AluJo SINE Alu -24 288 1 316 313 61 9 chr6 38311185 38311300 -150968254 - MIR3 SINE MIR -84 124 4 181 173 0 135 chr6 38311609 38311661 -150967893 + L2 LINE L2 3184 3228 -44 476 145 261 29 chr6 38315269 38315407 -150964147 - MIR SINE MIR -1 261 92 903 102 8 16 chr6 38315408 38315535 -150964019 + AluJb SINE Alu 1 126 -186 2323 92 0 16 chr6 38315557 38315861 -150963693 + AluSg SINE Alu 3 301 -9 300 188 0 0 chr6 38315862 38315910 -150963644 - MIR SINE MIR -163 99 52 2389 101 7 0 chr6 38315957 38316263 -150963291 + AluSg SINE Alu 1 308 -2 2174 97 4 0 chr6 38318720 38319034 -150960520 - AluSq SINE Alu 0 319 5 522 207 37 0 chr6 38319089 38319224 -150960330 - L1MD3 LINE L1 -12 7983 7844 760 339 77 16 chr6 38319809 38320119 -150959435 + MER115 DNA AcHobo 6 334 -359 724 237 6 35 chr6 38320189 38320272 -150959282 + MER115 DNA AcHobo 445 522 -171 611 230 83 89 chr6 38320272 38320494 -150959060 - LTR16A1 LTR ERVL 0 457 235 2211 92 0 7 chr6 38320494 38320806 -150958748 + AluSq SINE Alu 1 310 0 611 230 83 89 chr6 38320806 38321042 -150958512 - LTR16A1 LTR ERVL -222 235 1 724 237 6 35 chr6 38321042 38321131 -150958423 + MER115 DNA AcHobo 522 612 -81 875 88 0 22 chr6 38322158 38322294 -150957260 + FLAM_C SINE Alu 1 133 0 656 132 20 123 chr6 38322330 38322399 -150957155 + L1MB4 LINE L1 5765 5839 -341 207 0 0 0 chr6 38322399 38322422 -150957132 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2276 74 0 11 chr6 38322424 38322707 -150956847 - AluSx SINE Alu -31 281 2 656 132 20 123 chr6 38322707 38322838 -150956716 + L1MB4 LINE L1 5840 5947 -233 753 147 0 70 chr6 38322908 38323051 -150956503 + FLAM_C SINE Alu 1 133 0 911 174 5 54 chr6 38323052 38323236 -150956318 + L1MB4 LINE L1 5954 6145 -35 2253 96 0 0 chr6 38323236 38323517 -150956037 + AluSx SINE Alu 1 281 -31 225 0 0 0 chr6 38323521 38323546 -150956008 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 911 174 5 54 chr6 38323546 38323580 -150955974 + L1MB4 LINE L1 6148 6166 -14 371 113 16 0 chr6 38323590 38323652 -150955902 + (CA)n Simple_repeat Simple_repeat 2 64 0 24 0 0 0 chr6 38323704 38323728 -150955826 + AT_rich Low_complexity Low_complexity 1 24 0 672 173 17 23 chr6 38323750 38323923 -150955631 - L1MB4 LINE L1 -233 5947 5776 2018 148 3 0 chr6 38323938 38324235 -150955319 + AluJb SINE Alu 1 298 -14 2362 107 0 0 chr6 38324255 38324564 -150954990 - AluSp SINE Alu -4 309 1 310 262 114 74 chr6 38324595 38324893 -150954661 + L1M2 LINE L1 1743 2052 -4797 1299 150 4 53 chr6 38324979 38325226 -150954328 + AluJo SINE Alu 1 235 -77 1803 133 65 6 chr6 38325437 38325761 -150953793 + MER61A LTR ERV1 1 343 0 632 120 96 32 chr6 38326177 38326302 -150953252 + FLAM_C SINE Alu 1 133 0 470 205 86 8 chr6 38326688 38326805 -150952749 + MIR SINE MIR 70 195 -67 1881 115 48 24 chr6 38326807 38326944 -150952610 + AluSx SINE Alu 1 133 -179 2362 96 20 0 chr6 38326944 38327245 -150952309 + AluSx SINE Alu 1 307 -5 1881 115 48 24 chr6 38327245 38327402 -150952152 + AluSx SINE Alu 133 302 -10 484 268 32 25 chr6 38327418 38327575 -150951979 - MIR SINE MIR 0 262 105 405 0 0 0 chr6 38328158 38328203 -150951351 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2160 116 0 0 chr6 38328211 38328488 -150951066 - AluSx SINE Alu -35 277 1 767 104 22 44 chr6 38329331 38329466 -150950088 - MLT1B LTR MaLR -243 147 16 1749 157 11 31 chr6 38329853 38330164 -150949390 + AluJb SINE Alu 1 305 0 352 291 11 84 chr6 38330216 38330395 -150949159 + L1MC4 LINE L1 6765 6930 -1112 1802 168 27 3 chr6 38330395 38330693 -150948861 + AluJb SINE Alu 1 305 -7 249 33 0 0 chr6 38330705 38330735 -150948819 + (GGAA)n Simple_repeat Simple_repeat 2 31 0 349 230 63 94 chr6 38330736 38330927 -150948627 + L1MC4 LINE L1 6896 7080 -962 25 0 0 0 chr6 38330975 38331000 -150948554 + AT_rich Low_complexity Low_complexity 1 25 0 4352 122 17 33 chr6 38331122 38331612 -150947942 + MER50 LTR ERV1 1 477 -257 2479 93 7 0 chr6 38331612 38331922 -150947632 + AluSx SINE Alu 1 312 0 4352 122 17 33 chr6 38331922 38332154 -150947400 + MER50 LTR ERV1 477 711 -23 2330 119 0 0 chr6 38332511 38332823 -150946731 - AluSx SINE Alu 0 312 1 3549 160 11 35 chr6 38332879 38333167 -150946387 + L1MB8 LINE L1 5432 5725 -453 198 103 0 0 chr6 38333167 38333196 -150946358 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3549 160 11 35 chr6 38333196 38333602 -150945952 + L1MB8 LINE L1 5725 6110 -68 2268 88 3 3 chr6 38333616 38333968 -150945586 - AluSp SINE Alu 0 352 1 3852 90 16 20 chr6 38333993 38334187 -150945367 - L1MA2 LINE L1 0 6304 6111 2060 150 0 0 chr6 38334187 38334487 -150945067 + AluSx SINE Alu 1 300 -12 3852 90 16 20 chr6 38334487 38334902 -150944652 - L1MA2 LINE L1 -193 6111 5697 10860 190 70 48 chr6 38334902 38335690 -150943864 - L1M1 LINE L1 -4385 3180 2410 2042 155 0 19 chr6 38335690 38336007 -150943547 + AluSx SINE Alu 1 311 -1 10860 190 70 48 chr6 38336007 38336166 -150943388 - L1M1 LINE L1 -5155 2410 2256 2337 99 0 7 chr6 38336166 38336468 -150943086 - AluSc SINE Alu -9 300 1 10860 190 70 48 chr6 38336468 38337223 -150942331 - L1M1 LINE L1 -5309 2256 1519 2114 130 7 0 chr6 38337223 38337522 -150942032 + AluSx SINE Alu 1 301 -11 10860 190 70 48 chr6 38337522 38338316 -150941238 - L1M1 LINE L1 -6046 1519 506 769 182 0 0 chr6 38338316 38338448 -150941106 - FLAM_C SINE Alu -1 132 1 10860 190 70 48 chr6 38338448 38338892 -150940662 - L1M1 LINE L1 -7059 506 73 1842 183 20 0 chr6 38338893 38339199 -150940355 + AluJb SINE Alu 1 312 0 2300 102 3 0 chr6 38339210 38339503 -150940051 + AluSq SINE Alu 1 294 -19 2404 97 0 0 chr6 38339563 38339861 -150939693 - AluSq SINE Alu -15 298 1 2374 60 4 4 chr6 38339917 38340245 -150939309 + AluY SINE Alu 1 328 0 2351 88 3 3 chr6 38340738 38341045 -150938509 + AluSc SINE Alu 1 307 -2 777 111 8 8 chr6 38341195 38341333 -150938221 + FLAM_C SINE Alu 1 138 0 410 228 41 76 chr6 38341760 38341946 -150937608 - MIR SINE MIR -27 181 33 257 57 0 57 chr6 38342117 38342170 -150937384 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2148 109 4 0 chr6 38342170 38342447 -150937107 - AluSq SINE Alu -1 340 11 231 36 0 0 chr6 38342447 38342475 -150937079 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 909 190 19 0 chr6 38342477 38342635 -150936919 - AluJ SINE Alu -38 274 114 1964 118 74 0 chr6 38342660 38342930 -150936624 - AluSg SINE Alu -20 290 1 904 138 7 22 chr6 38342959 38343097 -150936457 - AluJ SINE Alu -174 138 3 337 324 58 12 chr6 38343256 38343429 -150936125 + MIR SINE MIR 82 262 0 389 308 79 18 chr6 38343463 38343568 -150935986 + MIR SINE MIR 30 149 -113 2124 78 44 34 chr6 38343568 38343861 -150935693 - AluSx SINE Alu -16 296 1 389 308 79 18 chr6 38343861 38343930 -150935624 + MIR SINE MIR 149 212 -50 449 240 0 0 chr6 38344113 38344213 -150935341 - L2 LINE L2 -25 3288 3189 1792 210 48 56 chr6 38347438 38347937 -150931617 - MLT1D LTR MaLR -9 496 2 225 200 67 33 chr6 38348063 38348153 -150931401 + L1MC5 LINE L1 7834 7926 -35 210 37 0 0 chr6 38349267 38349294 -150930260 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 712 124 35 0 chr6 38352156 38352269 -150927285 + FLAM_C SINE Alu 2 118 -25 27 0 0 0 chr6 38352274 38352301 -150927253 + AT_rich Low_complexity Low_complexity 1 27 0 244 264 57 57 chr6 38353052 38353158 -150926396 + MIR SINE MIR 95 200 -62 2172 136 13 3 chr6 38353173 38353482 -150926072 - AluSq SINE Alu -1 312 1 669 261 27 69 chr6 38353771 38353955 -150925599 + MIR SINE MIR 14 185 -77 2121 126 3 26 chr6 38353955 38354265 -150925289 + AluSx SINE Alu 1 303 -9 669 261 27 69 chr6 38354265 38354340 -150925214 + MIR SINE MIR 185 262 0 372 317 87 1 chr6 38354430 38354624 -150924930 - MIR SINE MIR -57 205 1 463 245 182 0 chr6 38356125 38356268 -150923286 + MER3 DNA MER1_type 27 195 -14 441 321 73 24 chr6 38356406 38356571 -150922983 + MIR SINE MIR 20 192 -70 2324 92 0 7 chr6 38356833 38357128 -150922426 + AluSq SINE Alu 1 293 -20 263 98 27 2 chr6 38358544 38358592 -150920962 + FRAM/FAM SINE Alu 16 59 -116 454 277 115 65 chr6 38358650 38358868 -150920686 - MIR SINE MIR -8 254 30 2214 110 7 0 chr6 38359026 38359317 -150920237 + AluSx SINE Alu 1 293 -19 1159 251 100 97 chr6 38361815 38361868 -150917686 + HAL1 LINE L1 1120 1171 -1336 2085 127 33 7 chr6 38361868 38362167 -150917387 + AluSx SINE Alu 1 307 -5 1159 251 100 97 chr6 38362167 38362499 -150917055 + HAL1 LINE L1 1171 1500 -1007 1815 157 24 34 chr6 38362499 38362793 -150916761 - AluJo SINE Alu -2 310 20 1159 251 100 97 chr6 38362793 38363135 -150916419 + HAL1 LINE L1 1500 1854 -653 1945 148 23 13 chr6 38363135 38363440 -150916114 + AluSx SINE Alu 1 308 -4 1159 251 100 97 chr6 38363440 38363620 -150915934 + HAL1 LINE L1 1854 2032 -475 253 290 65 8 chr6 38363665 38363789 -150915765 + LTR67 LTR ERVL 427 557 0 22 56 0 0 chr6 38363983 38364019 -150915535 + AT_rich Low_complexity Low_complexity 1 36 0 1255 99 0 12 chr6 38364071 38364233 -150915321 + AluSq SINE Alu 1 160 -153 497 62 0 0 chr6 38364275 38364339 -150915215 + U6 snRNA snRNA 38 101 -6 1344 132 0 33 chr6 38364356 38364568 -150914986 + AluSx SINE Alu 3 207 -105 645 283 88 38 chr6 38365045 38365066 -150914488 + MIR SINE MIR 11 30 -232 2307 114 0 0 chr6 38365066 38365364 -150914190 + AluSx SINE Alu 1 298 -14 645 283 88 38 chr6 38365364 38365582 -150913972 + MIR SINE MIR 29 262 0 2104 127 21 3 chr6 38365983 38366274 -150913280 + AluJb SINE Alu 1 296 -16 2559 67 0 3 chr6 38366276 38366588 -150912966 + AluY SINE Alu 1 311 0 232 170 21 0 chr6 38366984 38367031 -150912523 + MER63 DNA MER1_type 6 53 -877 * 1379 239 55 0 chr6 38367009 38367352 -150912202 + MER63 DNA MER1_type 700 1061 0 2264 133 0 0 chr6 38367929 38368238 -150911316 - AluSg SINE Alu -1 309 1 294 293 248 8 chr6 38368844 38369086 -150910468 - L3 LINE CR1 -17 1560 1261 2165 107 7 10 chr6 38369530 38369828 -150909726 - AluSx SINE Alu -15 297 1 896 274 17 9 chr6 38370107 38370337 -150909217 + MIR SINE MIR 31 262 0 2158 137 0 10 chr6 38372273 38372579 -150906975 + AluSx SINE Alu 1 303 -9 948 193 76 57 chr6 38372609 38372812 -150906742 + L1ME2 LINE L1 5887 6098 -66 2101 163 0 0 chr6 38372812 38373118 -150906436 + AluJb SINE Alu 1 306 -6 948 193 76 57 chr6 38373118 38373178 -150906376 + L1ME2 LINE L1 6098 6155 -9 26 0 0 0 chr6 38373216 38373242 -150906312 + AT_rich Low_complexity Low_complexity 1 26 0 272 316 204 36 chr6 38373359 38373716 -150905838 - L2 LINE L2 0 3272 2856 1886 154 45 3 chr6 38373977 38374269 -150905285 + AluJo SINE Alu 1 304 -8 1437 254 133 32 chr6 38374713 38375079 -150904475 + L1MD3 LINE L1 5896 6224 -1771 1737 161 50 17 chr6 38375079 38375377 -150904177 + AluJo SINE Alu 1 308 -4 1437 254 133 32 chr6 38375377 38375657 -150903897 + L1MD3 LINE L1 6224 6607 -1388 1584 136 168 0 chr6 38375661 38375970 -150903584 + MER46B DNA MER2_type 1 236 0 1129 248 33 13 chr6 38375971 38376270 -150903284 + L1MC4 LINE L1 6624 6928 -1114 2078 132 6 10 chr6 38376271 38376582 -150902972 + AluSp SINE Alu 1 310 -3 1783 201 0 0 chr6 38376597 38376895 -150902659 + AluJo SINE Alu 1 298 -14 896 186 48 12 chr6 38376908 38377075 -150902479 + FRAM SINE Alu 1 169 -7 1165 161 54 0 chr6 38377075 38377299 -150902255 + L1MD3 LINE L1 6889 7124 -871 1019 130 0 0 chr6 38377322 38377460 -150902094 + AluSp SINE Alu 153 290 -23 561 174 101 0 chr6 38377502 38377651 -150901903 + L1MD3 LINE L1 7832 7995 0 261 183 17 17 chr6 38377674 38377734 -150901820 + L1ME1 LINE L1 6096 6155 -11 1965 135 0 11 chr6 38377850 38378132 -150901422 + AluJb SINE Alu 2 280 -32 810 81 0 0 chr6 38378134 38378245 -150901309 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 2019 103 59 18 chr6 38378581 38378922 -150900632 + THE1A LTR MaLR 1 355 0 1640 195 0 7 chr6 38380008 38380305 -150899249 + AluJo SINE Alu 18 312 0 2240 129 0 0 chr6 38380315 38380618 -150898936 + AluSx SINE Alu 1 303 -9 510 17 0 0 chr6 38380634 38380693 -150898861 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 3130 133 18 6 chr6 38382516 38383005 -150896549 - LTR42 LTR ERVL 0 495 1 2249 104 3 7 chr6 38383857 38384155 -150895399 + AluSg SINE Alu 1 297 -13 2427 71 3 3 chr6 38384841 38385135 -150894419 - AluSq SINE Alu -19 294 1 2270 91 7 0 chr6 38385814 38386099 -150893455 - AluSx SINE Alu -25 287 1 466 253 73 101 chr6 38386701 38387029 -150892525 + MLT1J LTR MaLR 109 427 -84 2022 151 6 6 chr6 38387731 38388066 -150891488 + AluJb SINE Alu 1 335 0 2121 149 0 3 chr6 38388068 38388376 -150891178 + AluJo SINE Alu 1 307 -5 289 238 90 58 chr6 38389281 38389470 -150890084 + L2 LINE L2 3030 3224 -89 2313 112 0 3 chr6 38389576 38389879 -150889675 + AluSx SINE Alu 5 306 -6 594 210 16 0 chr6 38389891 38390015 -150889539 + FLAM_C SINE Alu 3 128 -5 504 266 8 0 chr6 38390030 38390154 -150889400 + MER104 DNA Tc2 53 177 -3 2390 102 0 0 chr6 38390248 38390543 -150889011 - AluSg SINE Alu -15 295 1 217 329 12 12 chr6 38390704 38390789 -150888765 - L2 LINE L2 -179 3093 3009 436 284 43 81 chr6 38390794 38391005 -150888549 - MIR SINE MIR -30 232 30 191 355 84 0 chr6 38391046 38391153 -150888401 - L3b LINE CR1 -289 1294 1179 187 231 0 0 chr6 38391185 38391224 -150888330 - L2 LINE L2 -81 3191 3153 11158 44 5 64 chr6 38391573 38393040 -150886514 - SVA Other Other -1295 1385 1 894 71 39 50 chr6 38393056 38393238 -150886316 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chr6 38393238 38393262 -150886292 + (AGGGGG)n Simple_repeat Simple_repeat 5 28 0 597 251 30 12 chr6 38394173 38394340 -150885214 - MER104 DNA Tc2 -7 173 4 787 153 0 0 chr6 38394372 38394490 -150885064 + FLAM_C SINE Alu 5 122 -21 270 136 0 0 chr6 38394490 38394534 -150885020 + (TA)n Simple_repeat Simple_repeat 1 44 0 284 322 76 17 chr6 38394617 38394735 -150884819 - L2 LINE L2 0 3313 3189 227 264 111 14 chr6 38394804 38394876 -150884678 + MIR3 SINE MIR 5 83 -125 657 69 0 0 chr6 38395043 38395130 -150884424 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 25 31 0 0 chr6 38395159 38395191 -150884363 + AT_rich Low_complexity Low_complexity 1 32 0 1318 196 0 24 chr6 38395191 38395446 -150884108 - AluJb SINE Alu -57 255 7 2060 98 0 33 chr6 38396446 38396751 -150882803 + AluSq SINE Alu 1 295 -18 1528 171 49 3 chr6 38396843 38397147 -150882407 + MER33 DNA MER1_type 1 318 -6 226 289 112 20 chr6 38397791 38397943 -150881611 + L1ME4a LINE L1 5616 5781 -340 1589 106 113 4 chr6 38398051 38398328 -150881226 + AluSx SINE Alu 1 305 0 1705 151 122 82 chr6 38398478 38398513 -150881041 - MLT2D LTR ERVL 0 414 382 228 35 0 0 chr6 38398513 38398542 -150881012 + (TC)n Simple_repeat Simple_repeat 1 29 0 1705 151 122 82 chr6 38398542 38398898 -150880656 - MLT2D LTR ERVL -32 382 7 1722 167 0 17 chr6 38398901 38399194 -150880360 + AluJb SINE Alu 1 288 -24 35 24 0 0 chr6 38399194 38399236 -150880318 + AT_rich Low_complexity Low_complexity 1 42 0 1263 206 0 40 chr6 38399842 38400090 -150879464 - MER8 DNA MER2_type -1 238 1 2030 109 10 3 chr6 38400099 38400402 -150879152 - AluSx SINE Alu -7 305 1 877 203 27 0 chr6 38400713 38400900 -150878654 + AluJo SINE Alu 121 312 0 366 250 20 40 chr6 38400900 38401000 -150878554 + L1ME4a LINE L1 5966 6063 -58 1734 148 13 10 chr6 38401016 38401314 -150878240 - AluJb SINE Alu -13 299 1 1753 166 0 7 chr6 38401318 38401639 -150877915 - AluJb SINE Alu 0 319 1 1993 110 0 26 chr6 38402158 38402467 -150877087 - AluSp SINE Alu -12 301 1 538 281 116 36 chr6 38402485 38402586 -150876968 + HAL1 LINE L1 17 109 -2398 239 0 32 0 chr6 38402586 38402617 -150876937 + (GA)n Simple_repeat Simple_repeat 1 32 0 538 281 116 36 chr6 38402617 38402928 -150876626 + HAL1 LINE L1 109 462 -2045 1323 172 161 11 chr6 38402975 38403236 -150876318 + AluJo SINE Alu 1 300 -2 808 104 49 49 chr6 38403245 38403389 -150876165 - LTR47B LTR ERVL -299 144 1 323 234 13 0 chr6 38403389 38403449 -150876105 + LTR47A LTR ERVL 392 452 0 367 325 79 35 chr6 38403728 38403956 -150875598 + HAL1 LINE L1 1114 1351 -1156 349 131 0 213 chr6 38403956 38403989 -150875565 + L1MB8 LINE L1 6080 6118 -60 2205 87 0 32 chr6 38403989 38404300 -150875254 - AluSx SINE Alu -11 301 1 349 131 0 213 chr6 38404300 38404321 -150875233 + L1MB8 LINE L1 6118 6142 -36 2060 124 0 13 chr6 38404321 38404635 -150874919 - AluSx SINE Alu -2 310 1 349 131 0 213 chr6 38404635 38404701 -150874853 + L1MB8 LINE L1 6142 6175 -3 2081 119 0 10 chr6 38404743 38405038 -150874516 + AluSx SINE Alu 1 292 -20 1962 266 78 88 chr6 38405368 38406281 -150873273 + Charlie2b DNA MER1_type 1 921 -1861 535 239 207 9 chr6 38406281 38406494 -150873060 + MIR SINE MIR 5 259 -3 1962 266 78 88 chr6 38406494 38406514 -150873040 + Charlie2b DNA MER1_type 921 940 -1842 2112 113 3 0 chr6 38406514 38406816 -150872738 + AluSx SINE Alu 1 303 -9 1962 266 78 88 chr6 38406816 38406920 -150872634 + Charlie2b DNA MER1_type 940 1029 -1753 471 134 109 17 chr6 38406920 38407039 -150872515 + Charlie2b DNA MER1_type 2297 2426 -356 1255 143 43 0 chr6 38407040 38407249 -150872305 + L1MC1 LINE L1 5920 6137 -196 639 155 19 0 chr6 38407254 38407357 -150872197 + L1MC1 LINE L1 6223 6327 -6 850 221 44 72 chr6 38407435 38407556 -150871998 + Charlie2b DNA MER1_type 2425 2548 -314 850 141 0 30 chr6 38407556 38407691 -150871863 + FLAM_C SINE Alu 2 132 -1 850 221 44 72 chr6 38407691 38407931 -150871623 + Charlie2b DNA MER1_type 2548 2776 -6 743 268 24 6 chr6 38408827 38408991 -150870563 + MIR SINE MIR 11 177 -85 2067 90 27 27 chr6 38409226 38409525 -150870029 - AluSg SINE Alu -1 309 11 1005 151 155 8 chr6 38409562 38409813 -150869741 - L1MA9 LINE L1 -5 6307 6020 21 57 0 0 chr6 38409898 38409933 -150869621 + AT_rich Low_complexity Low_complexity 1 35 0 814 136 0 0 chr6 38409937 38410055 -150869499 - FLAM_C SINE Alu -25 118 1 750 251 20 5 chr6 38410061 38410256 -150869298 - L1ME3 LINE L1 -62 6100 5903 4494 109 19 6 chr6 38411888 38412569 -150866985 - L1PB1 LINE L1 -2 6149 5460 394 253 41 89 chr6 38413171 38413317 -150866237 - L2 LINE L2 0 3272 3134 323 281 58 22 chr6 38413442 38413581 -150865973 + L2 LINE L2 1536 1679 -1635 187 307 20 89 chr6 38413584 38413685 -150865869 - MER5A DNA MER1_type -15 174 81 206 250 0 0 chr6 38413777 38413813 -150865741 + C-rich Low_complexity Low_complexity 1 39 -9 2033 117 3 3 chr6 38413813 38414113 -150865441 - AluSx SINE Alu -12 300 1 206 250 0 0 chr6 38414113 38414124 -150865430 + C-rich Low_complexity Low_complexity 38 48 0 865 216 0 0 chr6 38414352 38414514 -150865040 - FRAM SINE Alu -4 162 1 430 236 47 99 chr6 38414568 38414801 -150864753 - HAL1 LINE L1 -204 2303 2083 716 258 112 75 chr6 38414829 38415283 -150864271 - HAL1 LINE L1 -387 2120 1650 620 229 73 42 chr6 38415290 38415482 -150864072 - MLT1J1 LTR MaLR -7 439 242 1409 253 44 39 chr6 38415571 38416029 -150863525 - MER74B LTR ERVL -93 529 70 420 276 0 0 chr6 38416119 38416206 -150863348 - MLT1J1 LTR MaLR -324 122 36 2842 241 88 35 chr6 38416224 38417297 -150862257 - HAL1 LINE L1 -851 1656 527 7007 126 182 66 chr6 38417304 38418824 -150860730 + pTR5 LTR ERV1 742 2437 -1 453 276 76 85 chr6 38418837 38419283 -150860271 - HAL1 LINE L1 -1991 516 75 1389 287 153 34 chr6 38419321 38420126 -150859428 + L2 LINE L2 1822 2722 -592 1989 114 0 0 chr6 38420257 38420530 -150859024 + AluSx SINE Alu 1 273 -39 594 302 79 18 chr6 38420646 38421101 -150858453 + L1MEc LINE L1 1279 1882 -4725 721 71 0 10 chr6 38421127 38421226 -150858328 - AluSp SINE Alu -10 303 206 7942 127 68 119 chr6 38421226 38423014 -150856540 + pTR5 LTR ERV1 743 2438 0 1121 109 42 36 chr6 38423017 38423209 -150856345 - AluSp SINE Alu -104 209 17 1325 237 68 81 chr6 38423264 38423621 -150855933 + L1MEc LINE L1 1965 2325 -4282 1882 149 13 0 chr6 38423621 38423922 -150855632 + AluSx SINE Alu 6 310 -2 1325 237 68 81 chr6 38423922 38424020 -150855534 + L1MEc LINE L1 2325 2423 -4184 1510 199 0 30 chr6 38424020 38424321 -150855233 + AluJb SINE Alu 1 292 -20 1325 237 68 81 chr6 38424321 38424641 -150854913 + L1MEc LINE L1 2423 2731 -3876 * 2018 246 107 0 chr6 38424621 38425202 -150854352 + L1MC4 LINE L1 7257 7899 -143 638 296 181 41 chr6 38425499 38425657 -150853897 + L2 LINE L2 2841 2976 -337 1933 92 82 0 chr6 38425657 38425938 -150853616 - AluSp SINE Alu -9 304 1 638 296 181 41 chr6 38425938 38426194 -150853360 + L2 LINE L2 2976 3313 0 2399 70 0 0 chr6 38431026 38431325 -150848229 + AluY SINE Alu 1 299 -12 805 248 81 14 chr6 38431591 38431801 -150847753 + MER58A DNA MER1_type 1 224 0 2128 139 3 0 chr6 38432318 38432649 -150846905 - L1PB1 LINE L1 -8 6143 5812 1903 157 3 0 chr6 38433675 38433981 -150845573 + AluSx SINE Alu 1 307 -5 730 127 18 30 chr6 38433986 38434151 -150845403 + GA-rich Low_complexity Low_complexity 1 163 0 913 226 55 0 chr6 38434408 38434607 -150844947 - MER63A DNA MER1_type 0 210 1 456 364 62 4 chr6 38434806 38435031 -150844523 - MIR SINE MIR -17 245 8 200 262 0 0 chr6 38436243 38436285 -150843269 - L2 LINE L2 -20 3293 3252 2288 77 0 7 chr6 38436305 38436604 -150842950 + AluSx SINE Alu 1 297 -15 38389 68 9 4 chr6 38437254 38438391 -150841163 + HERVL-A1 LTR ERVL 879 2009 -3645 2161 101 10 0 chr6 38438391 38438688 -150840866 + AluSg SINE Alu 3 302 -8 38389 68 9 4 chr6 38438688 38442302 -150837252 + HERVL-A1 LTR ERVL 2009 5654 0 3114 59 86 0 chr6 38442302 38442711 -150836843 + MLT2A1 LTR ERVL 1 444 0 506 141 0 0 chr6 38442711 38442782 -150836772 - MSTA LTR MaLR -357 71 1 2057 199 62 85 chr6 38444085 38444767 -150834787 - LTR65 LTR ERV1 -3 666 1 209 103 26 0 chr6 38444852 38444883 -150834671 + GA-rich Low_complexity Low_complexity 1 35 -5 2333 92 3 0 chr6 38444883 38445176 -150834378 + AluSq SINE Alu 1 294 -19 500 348 20 25 chr6 38445972 38446216 -150833338 - MIR SINE MIR -5 257 15 2321 98 0 3 chr6 38446221 38446517 -150833037 - AluSg SINE Alu -15 295 1 602 144 32 0 chr6 38446603 38446728 -150832826 + L1MA7 LINE L1 6145 6273 -18 2729 199 163 13 chr6 38446745 38447493 -150832061 - MER21B LTR ERV1 -1 862 3 2154 129 26 0 chr6 38447551 38447853 -150831701 + AluSx SINE Alu 1 310 -2 609 268 32 11 chr6 38447896 38448086 -150831468 - L1ME3 LINE L1 -8 6154 5961 645 186 10 106 chr6 38448107 38448306 -150831248 - AluSg/x SINE Alu -13 297 118 863 136 8 15 chr6 38448415 38448547 -150831007 - AluJb SINE Alu -179 133 3 312 317 20 20 chr6 38449594 38449695 -150829859 + L1MEd LINE L1 442 542 -5577 254 256 37 12 chr6 38449896 38449978 -150829576 - MIR SINE MIR -15 247 164 41 0 0 0 chr6 38450550 38450591 -150828963 + AT_rich Low_complexity Low_complexity 1 41 0 515 187 0 0 chr6 38450661 38450752 -150828802 + FRAM SINE Alu 22 112 -64 383 268 10 88 chr6 38450757 38450951 -150828603 + L1MEd LINE L1 657 835 -5284 21 0 0 0 chr6 38450964 38450985 -150828569 + AT_rich Low_complexity Low_complexity 1 21 0 4041 84 19 84 chr6 38450985 38451553 -150828001 - L1MA1 LINE L1 0 6302 5698 2234 107 13 13 chr6 38451553 38451863 -150827691 - AluSg SINE Alu 0 310 1 2423 110 0 0 chr6 38451867 38452177 -150827377 - AluSg SINE Alu 0 310 1 4041 84 19 84 chr6 38452177 38452338 -150827216 - L1MA1 LINE L1 -607 5695 5616 534 308 39 0 chr6 38452348 38452504 -150827050 + MLT1J LTR MaLR 16 177 -334 1975 171 40 26 chr6 38453145 38453571 -150825983 + MSTB1 LTR MaLR 1 432 0 467 265 112 18 chr6 38455072 38455242 -150824312 + MIR SINE MIR 2 187 -75 2142 138 3 0 chr6 38455282 38455586 -150823968 + AluSx SINE Alu 1 305 -7 2258 119 0 0 chr6 38455586 38455959 -150823595 + AluSx SINE Alu 1 373 0 316 259 82 37 chr6 38456247 38456382 -150823172 - MER5A DNA MER1_type -12 177 37 514 258 45 68 chr6 38456634 38456695 -150822859 + MIR SINE MIR 46 107 -155 2318 66 56 0 chr6 38456695 38456983 -150822571 - AluSp SINE Alu -9 304 1 514 258 45 68 chr6 38456983 38457142 -150822412 + MIR SINE MIR 107 261 -1 1592 135 8 35 chr6 38460454 38460714 -150818840 - AluJo SINE Alu -59 253 1 730 224 79 0 chr6 38460921 38461086 -150818468 + LTR47A LTR ERVL 275 452 0 368 333 18 23 chr6 38461103 38461274 -150818280 + LTR47A-int LTR ERVL 15 184 -5159 2055 128 24 0 chr6 38462250 38462538 -150817016 + AluSx SINE Alu 1 295 -17 2487 83 3 0 chr6 38462539 38462840 -150816714 + AluSq SINE Alu 1 302 -11 366 339 50 53 chr6 38463272 38463611 -150815943 + HERVL18 LTR ERVL 1523 1860 -4187 10156 27 0 112 chr6 38463627 38465063 -150814491 - SVA Other Other 0 1386 154 5272 77 3 15 chr6 38465339 38465819 -150813735 - L1PA13 LINE L1 0 6163 5694 2266 101 3 3 chr6 38465819 38466117 -150813437 - AluSp SINE Alu -15 298 1 5272 77 3 15 chr6 38466117 38466387 -150813167 - L1PA13 LINE L1 -469 5694 5422 419 100 0 0 chr6 38466387 38466447 -150813107 - AluSp/q SINE Alu -22 291 232 3499 152 2 3 chr6 38466447 38467147 -150812407 - L1PA13 LINE L1 -736 5438 4740 487 320 32 62 chr6 38467167 38467221 -150812333 + HERVL18 LTR ERVL 2314 2368 -2975 2363 110 0 0 chr6 38467221 38467530 -150812024 - AluSg SINE Alu -1 309 1 487 320 32 62 chr6 38467530 38467816 -150811738 + HERVL18 LTR ERVL 2368 2644 -2699 676 300 19 19 chr6 38468252 38468559 -150810995 + HERVL18 LTR ERVL 3275 3581 -2466 2483 74 7 0 chr6 38468788 38469085 -150810469 + AluSp SINE Alu 1 299 -14 207 0 0 0 chr6 38469085 38469108 -150810446 + (TA)n Simple_repeat Simple_repeat 1 23 0 526 193 126 0 chr6 38469118 38469237 -150810317 + AluJo SINE Alu 3 136 -176 187 315 0 0 chr6 38469390 38469444 -150810110 + L3 LINE CR1 567 620 -957 280 149 0 0 chr6 38470377 38470424 -150809130 + MER4B-int LTR ERV1 5922 5968 -790 278 359 61 15 chr6 38470408 38470501 -150809053 + MER4B-int LTR ERV1 6402 6489 -633 * 1982 133 0 27 chr6 38470501 38470801 -150808753 + AluSx SINE Alu 21 312 0 278 359 61 15 chr6 38470801 38470969 -150808585 + MER4B-int LTR ERV1 6489 6675 -447 590 182 0 58 chr6 38471176 38471297 -150808257 + MER4B-int LTR ERV1 5968 6081 -677 4431 128 184 109 chr6 38471348 38472649 -150806905 + pTR5 LTR ERV1 741 2438 0 622 181 54 60 chr6 38472859 38472964 -150806590 + LTR47A LTR ERVL 288 393 -59 1866 146 23 85 chr6 38472964 38473286 -150806268 - LTR47B LTR ERVL 0 443 158 1809 174 0 10 chr6 38473286 38473596 -150805958 + AluJo SINE Alu 1 307 -5 1866 146 23 85 chr6 38473596 38473745 -150805809 - LTR47B LTR ERVL -285 158 1 622 181 54 60 chr6 38473745 38473805 -150805749 + LTR47A LTR ERVL 393 452 0 353 346 70 26 chr6 38474084 38474312 -150805242 + HAL1 LINE L1 1114 1351 -1156 348 115 0 213 chr6 38474312 38474345 -150805209 + L1MB8 LINE L1 6080 6118 -60 2323 93 0 32 chr6 38474345 38474656 -150804898 - AluSx SINE Alu -11 301 1 348 115 0 213 chr6 38474656 38474677 -150804877 + L1MB8 LINE L1 6118 6142 -36 2169 115 0 40 chr6 38474677 38474857 -150804697 - AluSx SINE Alu -2 310 147 2610 11 0 0 chr6 38474857 38475134 -150804420 - AluYb8 SINE Alu -8 310 34 2169 115 0 40 chr6 38475134 38475276 -150804278 - AluSx SINE Alu -165 147 1 348 115 0 213 chr6 38475276 38475342 -150804212 + L1MB8 LINE L1 6142 6175 -3 2205 122 0 35 chr6 38475384 38475703 -150803851 + AluSx SINE Alu 1 308 -4 1891 266 76 94 chr6 38476009 38476933 -150802621 + Charlie2b DNA MER1_type 1 939 -1843 475 245 204 9 chr6 38476933 38477149 -150802405 + MIR SINE MIR 5 262 0 1891 266 76 94 chr6 38477149 38477166 -150802388 + Charlie2b DNA MER1_type 939 955 -1827 2254 116 3 0 chr6 38477166 38477468 -150802086 + AluSx SINE Alu 1 303 -9 1891 266 76 94 chr6 38477468 38477572 -150801982 + Charlie2b DNA MER1_type 955 1029 -1753 442 134 109 17 chr6 38477572 38477691 -150801863 + Charlie2b DNA MER1_type 2297 2426 -356 1189 144 43 0 chr6 38477692 38477900 -150801654 + L1MC1 LINE L1 5920 6136 -197 611 155 19 0 chr6 38477906 38478009 -150801545 + L1MC1 LINE L1 6223 6327 -6 786 224 44 72 chr6 38478089 38478210 -150801344 + Charlie2b DNA MER1_type 2425 2548 -314 826 141 0 30 chr6 38478210 38478345 -150801209 + FLAM_C SINE Alu 2 132 -1 786 224 44 72 chr6 38478345 38478585 -150800969 + Charlie2b DNA MER1_type 2548 2776 -6 695 268 24 6 chr6 38479482 38479646 -150799908 + MIR SINE MIR 11 177 -85 2186 97 27 27 chr6 38479882 38480182 -150799372 - AluSg SINE Alu 0 310 11 921 155 155 8 chr6 38480219 38480470 -150799084 - L1MA9 LINE L1 -5 6307 6020 21 57 0 0 chr6 38480555 38480590 -150798964 + AT_rich Low_complexity Low_complexity 1 35 0 879 136 0 0 chr6 38480594 38480712 -150798842 - FLAM_C SINE Alu -25 118 1 737 251 20 5 chr6 38480718 38480913 -150798641 - L1ME3 LINE L1 -62 6100 5903 222 239 282 0 chr6 38481301 38481372 -150798182 + L2 LINE L2 3183 3273 -40 304 229 49 104 chr6 38484646 38484829 -150794725 - MER5A DNA MER1_type 0 189 17 335 203 351 14 chr6 38485517 38485665 -150793889 + MIR SINE MIR 1 198 -64 29 28 0 0 chr6 38485733 38485769 -150793785 + AT_rich Low_complexity Low_complexity 1 36 0 223 261 14 14 chr6 38487060 38487129 -150792425 - MIR3 SINE MIR -19 189 121 194 276 0 92 chr6 38487769 38487836 -150791718 - MIR SINE MIR -58 204 145 1877 154 0 47 chr6 38487836 38488007 -150791547 - AluJb SINE Alu -8 304 153 2213 126 0 13 chr6 38488007 38488316 -150791238 - AluSx SINE Alu -7 305 1 1877 154 0 47 chr6 38488316 38488463 -150791091 - AluJb SINE Alu -159 153 1 194 276 0 92 chr6 38488463 38488482 -150791072 - MIR SINE MIR -117 145 126 384 259 152 44 chr6 38488521 38488791 -150790763 - MLT1J LTR MaLR -3 508 210 850 285 88 44 chr6 38488817 38489273 -150790281 - L2 LINE L2 -20 3293 2818 825 186 120 11 chr6 38489322 38489505 -150790049 - MER3 DNA MER1_type -6 203 1 183 286 36 0 chr6 38489505 38489561 -150789993 - L2 LINE L2 -504 2810 2753 820 215 93 15 chr6 38489561 38489766 -150789788 - MLT1J LTR MaLR -289 222 2 2131 100 30 17 chr6 38490371 38490670 -150788884 - AluSx SINE Alu -9 303 1 2634 103 11 0 chr6 38490931 38491308 -150788246 - LTR57 LTR ERVL -30 381 1 332 258 2 25 chr6 38491308 38491404 -150788150 - MIR SINE MIR -63 145 69 374 260 70 50 chr6 38491678 38491821 -150787733 + MIR SINE MIR 45 188 -63 466 130 0 0 chr6 38493379 38493456 -150786098 - HY1 scRNA scRNA 0 112 36 396 206 43 0 chr6 38493708 38493800 -150785754 - MIR SINE MIR -118 144 49 498 75 0 0 chr6 38494187 38494254 -150785300 + (TCCC)n Simple_repeat Simple_repeat 1 67 0 388 88 29 15 chr6 38494254 38494322 -150785232 - AluSq SINE Alu 0 302 234 1503 88 5 0 chr6 38494322 38494516 -150785038 - AluSq SINE Alu -118 195 1 267 299 82 0 chr6 38494582 38494679 -150784875 - MIR SINE MIR -92 170 66 980 284 116 14 chr6 38496115 38496428 -150783126 - L1M4 LINE L1 -1002 5144 4758 2370 70 0 7 chr6 38496428 38496728 -150782826 - AluSq SINE Alu -15 298 1 980 284 116 14 chr6 38496728 38496922 -150782632 - L1M4 LINE L1 -1388 4758 4585 247 228 13 38 chr6 38498370 38498449 -150781105 + MIR SINE MIR 89 165 -97 * 384 199 108 17 chr6 38498429 38498576 -150780978 - MIR SINE MIR 0 262 101 379 227 45 83 chr6 38498562 38498694 -150780860 + MIR SINE MIR 136 262 0 * 286 352 83 0 chr6 38499120 38499265 -150780289 + MIR3 SINE MIR 32 188 -20 252 306 102 36 chr6 38499580 38499776 -150779778 + MIR SINE MIR 20 228 -34 1078 189 32 23 chr6 38499973 38500190 -150779364 - MER20 DNA MER1_type 0 219 1 390 202 90 11 chr6 38500664 38500753 -150778801 - L2 LINE L2 -15 3298 3203 520 301 82 11 chr6 38501940 38502123 -150777431 + MER91A DNA MER1_type 1 196 0 2172 119 0 6 chr6 38502208 38502520 -150777034 - AluSx SINE Alu 0 312 3 289 285 131 0 chr6 38502524 38502654 -150776900 - MIR SINE MIR -66 196 50 262 389 8 24 chr6 38502822 38502948 -150776606 - MIR SINE MIR -16 246 123 441 265 137 25 chr6 38504483 38504619 -150774935 - L1ME4a LINE L1 0 6121 5953 678 157 96 0 chr6 38504619 38504734 -150774820 - FLAM_C SINE Alu -3 130 5 441 265 137 25 chr6 38504734 38504801 -150774753 - L1ME4a LINE L1 -168 5953 5895 372 114 63 0 chr6 38504944 38505023 -150774531 + CT-rich Low_complexity Low_complexity 5 88 0 1878 154 23 0 chr6 38505029 38505334 -150774220 - AluSx SINE Alu 0 312 1 438 181 53 0 chr6 38506003 38506097 -150773457 - L2 LINE L2 0 3313 3215 234 0 0 0 chr6 38506097 38506123 -150773431 + (CAGGC)n Simple_repeat Simple_repeat 4 29 0 1222 206 11 35 chr6 38506124 38506430 -150773124 + AluJb SINE Alu 9 307 0 2217 109 0 0 chr6 38506433 38506736 -150772818 + AluY SINE Alu 1 303 -8 184 317 77 10 chr6 38506766 38506870 -150772684 - L2 LINE L2 -158 3155 3045 299 361 48 7 chr6 38507030 38507182 -150772372 - MIR SINE MIR -67 195 37 281 320 31 16 chr6 38507292 38507420 -150772134 + MIR SINE MIR 83 212 -50 634 254 27 23 chr6 38507525 38507745 -150771809 + MIR SINE MIR 39 259 -3 194 377 0 0 chr6 38507749 38507826 -150771728 + MIR3 SINE MIR 79 155 -53 315 188 54 80 chr6 38515217 38515329 -150764225 + L1ME LINE L1 707 815 -5255 250 299 103 0 chr6 38516802 38516899 -150762655 - MIR SINE MIR -90 172 66 222 336 46 46 chr6 38518681 38518961 -150760593 + L2 LINE L2 2065 2344 -970 466 273 106 0 chr6 38518968 38519100 -150760454 - L2 LINE L2 -5 3267 3122 2047 132 10 0 chr6 38519404 38519708 -150759846 + AluSg SINE Alu 1 307 -3 740 188 0 15 chr6 38519720 38519853 -150759701 + FLAM_C SINE Alu 3 133 0 240 158 88 18 chr6 38519857 38519914 -150759640 - MER5A DNA MER1_type -128 61 1 533 246 24 62 chr6 38520073 38520284 -150759270 - HAL1 LINE L1 -6 2501 2299 1572 210 35 40 chr6 38520396 38520436 -150759118 + MLT1A2 LTR MaLR 1 40 -334 1621 139 40 33 chr6 38520436 38520737 -150758817 - AluJo SINE Alu -9 303 1 1572 210 35 40 chr6 38520737 38521072 -150758482 + MLT1A2 LTR MaLR 40 374 0 26 30 0 0 chr6 38521117 38521150 -150758404 + AT_rich Low_complexity Low_complexity 1 33 0 2279 100 0 3 chr6 38521438 38521747 -150757807 - AluSx SINE Alu -4 308 1 282 194 0 0 chr6 38521956 38522018 -150757536 + CT-rich Low_complexity Low_complexity 3 64 0 564 185 0 0 chr6 38522051 38522159 -150757395 - L1MB3 LINE L1 0 6183 6076 1945 116 39 0 chr6 38522741 38523048 -150756506 + AluSq SINE Alu 1 313 0 279 297 161 0 chr6 38523294 38523412 -150756142 + L2 LINE L2 3136 3272 0 665 161 12 12 chr6 38523539 38523700 -150755854 + GA-rich Low_complexity Low_complexity 3 163 0 276 100 0 0 chr6 38523719 38523759 -150755795 + (GGGGA)n Simple_repeat Simple_repeat 1 40 0 1485 106 5 0 chr6 38524075 38524283 -150755271 - AluSp SINE Alu 0 313 105 2798 133 88 32 chr6 38524289 38524823 -150754731 + LTR9 LTR ERV1 49 612 0 24 0 0 0 chr6 38524998 38525022 -150754532 + AT_rich Low_complexity Low_complexity 1 24 0 221 268 10 82 chr6 38525506 38525603 -150753951 + MIR SINE MIR 36 125 -83 1278 201 73 28 chr6 38525810 38525954 -150753600 + AluJo SINE Alu 1 137 -165 2287 92 0 0 chr6 38525954 38526257 -150753297 + AluSg SINE Alu 1 303 -7 1278 201 73 28 chr6 38526257 38526400 -150753154 + AluJo SINE Alu 137 301 -1 399 309 36 26 chr6 38526403 38526597 -150752957 + MIR SINE MIR 48 243 -19 855 187 13 0 chr6 38527196 38527346 -150752208 - FRAM SINE Alu -4 172 21 1964 122 0 10 chr6 38528094 38528415 -150751139 - AluSq SINE Alu 0 313 3 1882 121 0 7 chr6 38528429 38528702 -150750852 - AluSx SINE Alu -5 307 37 1746 134 65 0 chr6 38529144 38529421 -150750133 - AluJb SINE Alu -16 296 2 213 111 0 28 chr6 38532543 38532579 -150746975 + (TCC)n Simple_repeat Simple_repeat 1 35 0 223 220 19 57 chr6 38533176 38533335 -150746219 + (CGGG)n Simple_repeat Simple_repeat 2 154 0 247 286 0 13 chr6 38533423 38533500 -150746054 + G-rich Low_complexity Low_complexity 3 78 0 229 187 0 53 chr6 38533590 38533665 -150745889 + C-rich Low_complexity Low_complexity 1 71 0 409 232 232 0 chr6 38535959 38536101 -150743453 - MER5A DNA MER1_type -1 188 14 182 375 98 0 chr6 38536165 38536277 -150743277 - L3 LINE CR1 -2 1575 1453 230 341 78 15 chr6 38536484 38536754 -150742800 - L1MC4a LINE L1 -1834 5974 5688 864 117 0 35 chr6 38536762 38536907 -150742647 - FLAM_C SINE Alu -1 142 3 302 304 33 21 chr6 38536910 38537329 -150742225 - L1MC4a LINE L1 -487 5675 5219 550 289 12 0 chr6 38537395 38537561 -150741993 + MIR SINE MIR 84 251 -11 443 238 0 57 chr6 38538497 38538619 -150740935 + L2 LINE L2 2204 2318 -996 816 113 8 16 chr6 38538619 38538743 -150740811 - FLAM_C SINE Alu -8 135 13 1323 265 78 26 chr6 38538744 38539464 -150740090 + L2 LINE L2 2308 3060 -253 369 43 0 0 chr6 38540537 38540584 -150738970 + (TG)n Simple_repeat Simple_repeat 2 48 0 362 223 240 0 chr6 38540668 38540789 -150738765 - MER91B DNA MER1_type -1 189 40 304 269 140 31 chr6 38542584 38542777 -150736777 - LTR33 LTR ERVL -134 387 174 383 240 30 0 chr6 38542822 38542922 -150736632 - LTR33 LTR ERVL -418 103 1 2150 114 10 0 chr6 38542979 38543285 -150736269 + AluSq SINE Alu 1 309 -4 254 308 58 25 chr6 38543324 38543444 -150736110 + MIR SINE MIR 77 200 -62 412 160 51 29 chr6 38544014 38544189 -150735365 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 272 200 15 15 chr6 38544205 38544270 -150735284 + (TCCA)n Simple_repeat Simple_repeat 3 67 0 1695 196 69 25 chr6 38549435 38549533 -150730021 - Charlie4a DNA MER1_type -1453 508 416 2143 140 7 3 chr6 38549533 38549841 -150729713 + AluSx SINE Alu 1 309 -3 1695 196 69 25 chr6 38549841 38550191 -150729363 - Charlie4a DNA MER1_type -1545 416 40 515 293 40 83 chr6 38550238 38550421 -150729133 + L3 LINE CR1 681 870 -707 1495 182 35 28 chr6 38550421 38550707 -150728847 + AluJo SINE Alu 11 298 -14 515 293 40 83 chr6 38550707 38550922 -150728632 + L3 LINE CR1 870 1062 -515 2435 83 0 7 chr6 38551064 38551366 -150728188 - AluSg SINE Alu -10 300 1 944 320 94 27 chr6 38551404 38552155 -150727399 + L2 LINE L2 2375 3174 -98 213 240 20 0 chr6 38552227 38552277 -150727277 + L3 LINE CR1 1295 1345 -232 * 316 268 137 40 chr6 38552276 38552493 -150727061 - MIR SINE MIR 0 262 26 2315 93 0 0 chr6 38552493 38552784 -150726770 - AluSg SINE Alu -19 291 1 316 268 137 40 chr6 38552784 38552798 -150726756 - MIR SINE MIR -236 26 15 1264 149 5 21 chr6 38552888 38553082 -150726472 + AluSg/x SINE Alu 90 280 -32 2140 136 0 16 chr6 38553121 38553438 -150726116 - AluJb SINE Alu 0 312 1 2182 128 13 0 chr6 38553531 38553836 -150725718 - AluSx SINE Alu -3 309 1 225 83 0 0 chr6 38553837 38553873 -150725681 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2087 106 14 14 chr6 38553873 38554157 -150725397 - AluSq SINE Alu -29 284 1 780 215 32 0 chr6 38554163 38554321 -150725233 - FRAM SINE Alu -21 155 1 1168 122 48 32 chr6 38554333 38554503 -150725051 - AluJb SINE Alu -1 311 136 2457 78 3 10 chr6 38554503 38554810 -150724744 - AluSq SINE Alu -6 307 3 1168 122 48 32 chr6 38554810 38554827 -150724727 - AluJb SINE Alu -176 136 121 257 183 0 28 chr6 38554910 38554981 -150724573 + CT-rich Low_complexity Low_complexity 1 69 0 1696 169 0 30 chr6 38554981 38555276 -150724278 - AluJo SINE Alu -26 286 1 225 154 0 0 chr6 38555278 38555317 -150724237 + T-rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr6 38555682 38555709 -150723845 + AT_rich Low_complexity Low_complexity 1 27 0 2292 113 0 7 chr6 38555724 38556024 -150723530 + AluSx SINE Alu 1 298 -14 714 129 76 8 chr6 38556043 38556175 -150723379 - FRAM SINE Alu -36 140 1 2410 84 7 3 chr6 38556496 38556806 -150722748 - AluSq SINE Alu -2 311 1 202 241 0 19 chr6 38557167 38557221 -150722333 + CT-rich Low_complexity Low_complexity 2 54 0 227 186 14 43 chr6 38557410 38557480 -150722074 + GA-rich Low_complexity Low_complexity 1 68 0 2267 128 0 3 chr6 38559304 38559617 -150719937 - AluSx SINE Alu 0 312 1 539 288 46 21 chr6 38561621 38561839 -150717715 + MIR SINE MIR 21 248 -14 23 0 0 0 chr6 38563207 38563230 -150716324 + GC_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr6 38565432 38565456 -150714098 + (TG)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr6 38565456 38565479 -150714075 + AT_rich Low_complexity Low_complexity 1 23 0 180 237 0 0 chr6 38565797 38565835 -150713719 + L2 LINE L2 3225 3262 -10 893 269 25 12 chr6 38566255 38566497 -150713057 + MIR SINE MIR 13 257 -5 2337 84 3 0 chr6 38567035 38567344 -150712210 - AluSg SINE Alu 0 310 1 1231 92 0 65 chr6 38567966 38568150 -150711404 - AluSg/x SINE Alu -21 289 118 1044 64 7 43 chr6 38568183 38568323 -150711231 - AluY SINE Alu -176 135 1 317 153 62 181 chr6 38568333 38568477 -150711077 + MER58 DNA MER1_type 211 2416 -4 222 239 282 0 chr6 38569360 38569431 -150710123 + L2 LINE L2 3183 3273 -40 1147 180 59 69 chr6 38572507 38572732 -150706822 + MLT1A2 LTR MaLR 86 309 -65 1815 155 3 42 chr6 38572732 38572876 -150706678 + AluJb SINE Alu 1 128 -184 2369 93 0 3 chr6 38572876 38573176 -150706378 + AluSx SINE Alu 6 304 -8 1815 155 3 42 chr6 38573176 38573340 -150706214 + AluJb SINE Alu 128 297 -15 1147 180 59 69 chr6 38573340 38573403 -150706151 + MLT1A2 LTR MaLR 309 371 -3 1693 144 50 14 chr6 38573934 38574212 -150705342 - AluJo SINE Alu -24 288 1 1583 282 76 24 chr6 38574232 38574888 -150704666 - L1MC4a LINE L1 -1660 6148 5459 32 57 0 0 chr6 38575234 38575287 -150704267 + AT_rich Low_complexity Low_complexity 1 53 0 2341 108 0 3 chr6 38575494 38575801 -150703753 - AluSc SINE Alu -3 306 1 490 215 51 82 chr6 38575962 38576157 -150703397 - MLT1J LTR MaLR -33 478 290 2418 99 0 0 chr6 38576194 38576496 -150703058 - AluSq SINE Alu -7 306 5 319 164 0 41 chr6 38577015 38577040 -150702514 - MER72 LTR ERV1 0 722 698 1408 172 122 7 chr6 38577040 38577162 -150702392 + AluJo SINE Alu 1 108 -204 234 0 0 0 chr6 38577162 38577188 -150702366 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1408 172 122 7 chr6 38577188 38577344 -150702210 + AluJo SINE Alu 108 311 -1 319 164 0 41 chr6 38577344 38577391 -150702163 - MER72 LTR ERV1 -24 698 653 605 146 10 0 chr6 38577394 38577490 -150702064 + AluJ/FLAM SINE Alu 3 99 -213 1669 129 15 41 chr6 38577491 38577839 -150701715 - MER61C LTR ERV1 0 434 1 1092 159 0 0 chr6 38577876 38578046 -150701508 + FRAM SINE Alu 1 170 -6 1047 262 118 3 chr6 38578099 38578446 -150701108 - LTR16C LTR ERVL 0 491 105 4413 151 61 24 chr6 38578874 38579438 -150700116 + MER49 LTR ERV1 1 607 -316 2423 76 6 19 chr6 38579438 38579752 -150699802 - AluY SINE Alu -1 310 1 4413 151 61 24 chr6 38579752 38580020 -150699534 + MER49 LTR ERV1 607 864 -59 1380 159 0 14 chr6 38580020 38580240 -150699314 - AluJb SINE Alu -1 311 95 1541 129 20 31 chr6 38580240 38580582 -150698972 + MER61C LTR ERV1 3 434 0 205 222 10 61 chr6 38580816 38580915 -150698639 + GA-rich Low_complexity Low_complexity 2 95 0 198 0 0 0 chr6 38581896 38581918 -150697636 + (T)n Simple_repeat Simple_repeat 1 22 0 3907 127 44 2 chr6 38581936 38582550 -150697004 - LTR9B LTR ERV1 0 644 5 1735 143 8 11 chr6 38582555 38582821 -150696733 - AluSq SINE Alu -48 265 1 628 205 0 0 chr6 38582970 38583087 -150696467 + FLAM_C SINE Alu 1 117 -26 2419 99 0 3 chr6 38583091 38583403 -150696151 - AluSq SINE Alu 0 313 3 23 0 0 0 chr6 38583429 38583452 -150696102 + AT_rich Low_complexity Low_complexity 1 23 0 2366 106 0 3 chr6 38583452 38583764 -150695790 + AluSx SINE Alu 1 311 -1 812 94 0 0 chr6 38583839 38583945 -150695609 + AluSg/x SINE Alu 197 302 -8 1449 145 31 120 chr6 38584218 38584542 -150695012 + AluJo SINE Alu 1 295 -17 1514 244 82 69 chr6 38584703 38585339 -150694215 - MER21B LTR ERV1 -192 671 28 29 94 0 0 chr6 38585913 38585998 -150693556 + AT_rich Low_complexity Low_complexity 1 85 0 272 305 45 23 chr6 38586485 38586662 -150692892 - L1MC5 LINE L1 -52 7909 7729 2269 108 19 17 chr6 38587134 38587496 -150692058 + THE1B LTR MaLR 1 363 -1 2015 140 6 32 chr6 38587496 38587810 -150691744 + AluSx SINE Alu 1 306 -6 9554 100 43 43 chr6 38587823 38589402 -150690152 + THE1B-int LTR MaLR 2 1580 0 2064 141 36 30 chr6 38589402 38589758 -150689796 + THE1B LTR MaLR 1 367 -61 2290 109 23 0 chr6 38589758 38590062 -150689492 - AluSx SINE Alu -1 311 1 2064 141 36 30 chr6 38590062 38590125 -150689429 + THE1B LTR MaLR 367 428 0 848 238 9 53 chr6 38590150 38590437 -150689117 + L1ME1 LINE L1 5872 6291 -21 2583 68 0 3 chr6 38590460 38590771 -150688783 + AluY SINE Alu 1 310 -1 3760 139 19 17 chr6 38590933 38591122 -150688432 - MER41B LTR ERV1 -2 633 446 2053 112 58 0 chr6 38591122 38591416 -150688138 - AluSx SINE Alu -1 311 1 3760 139 19 17 chr6 38591416 38591858 -150687696 - MER41B LTR ERV1 -189 446 1 1189 278 80 17 chr6 38592276 38592751 -150686803 + MLT1J LTR MaLR 1 505 -6 258 306 126 9 chr6 38594385 38594496 -150685058 - L2 LINE L2 0 3272 3149 1997 161 7 0 chr6 38594882 38595192 -150684362 + AluJb SINE Alu 1 312 0 755 246 77 0 chr6 38595291 38595498 -150684056 + MLT1J LTR MaLR 1 223 -288 2195 133 0 0 chr6 38595533 38595833 -150683721 + AluSx SINE Alu 1 300 -12 2002 136 44 33 chr6 38595849 38596209 -150683345 - THE1B LTR MaLR 0 364 1 8432 88 33 35 chr6 38596209 38597262 -150682292 - THE1B-int LTR MaLR 0 1580 526 1202 111 49 0 chr6 38597262 38597389 -150682165 + AluJb SINE Alu 1 135 -177 2289 110 3 13 chr6 38597389 38597698 -150681856 + AluSx SINE Alu 1 306 -6 8432 88 33 35 chr6 38597424 38598191 -150681363 - THE1B-int LTR MaLR -1054 526 1 2211 133 33 41 chr6 38598191 38598558 -150680996 - THE1B LTR MaLR 0 364 1 1465 193 4 23 chr6 38598561 38598825 -150680729 + AluJo SINE Alu 24 282 -30 2237 123 7 0 chr6 38599662 38599963 -150679591 - AluSg SINE Alu -7 303 1 1655 122 110 115 chr6 38600070 38600232 -150679322 + MSTA LTR MaLR 22 183 -245 2312 98 13 0 chr6 38600232 38600539 -150679015 + AluSp SINE Alu 1 311 -2 1655 122 110 115 chr6 38600539 38600785 -150678769 + MSTA LTR MaLR 183 428 0 969 111 4 183 chr6 38601176 38601411 -150678143 + 7SK RNA RNA 1 193 0 2656 152 21 2 chr6 38602079 38602499 -150677055 - MSTA LTR MaLR 0 428 1 1576 195 34 0 chr6 38602642 38602940 -150676614 + AluJo SINE Alu 1 308 -4 4948 119 48 5 chr6 38603075 38603881 -150675673 - Tigger1 DNA MER2_type -1 2417 1577 2482 100 0 0 chr6 38603899 38604209 -150675345 - AluSq SINE Alu -3 310 1 1087 91 0 0 chr6 38604211 38604343 -150675211 - AluSq/x SINE Alu -180 132 1 5102 98 1 12 chr6 38604343 38605095 -150674459 - Tigger1 DNA MER2_type -829 1589 846 237 108 0 0 chr6 38605180 38605217 -150674337 + (TG)n Simple_repeat Simple_repeat 2 38 0 413 115 0 39 chr6 38605228 38605306 -150674248 + MLT1F LTR MaLR 468 542 0 4431 169 56 67 chr6 38605731 38606813 -150672741 + MER11C LTR ERVK 1 1071 0 1028 257 55 23 chr6 38606911 38606931 -150672623 - MLT1I LTR MaLR 0 409 391 2344 100 0 3 chr6 38606931 38607230 -150672324 + AluSc SINE Alu 1 298 -11 1028 257 55 23 chr6 38607230 38607258 -150672296 - MLT1I LTR MaLR -18 391 365 2121 145 0 0 chr6 38607258 38607555 -150671999 - AluSx SINE Alu -15 297 1 1028 257 55 23 chr6 38607555 38607848 -150671706 - MLT1I LTR MaLR -44 365 56 313 180 22 11 chr6 38607848 38607937 -150671617 - L1MDa LINE L1 -4456 2084 1995 757 193 0 0 chr6 38607937 38608056 -150671498 + AluJb SINE Alu 2 120 -192 189 107 0 0 chr6 38608058 38608086 -150671468 + (CA)n Simple_repeat Simple_repeat 1 28 0 629 0 26 0 chr6 38608088 38608164 -150671390 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 5399 197 70 40 chr6 38608165 38609123 -150670431 - L1MDa LINE L1 -4537 2003 1075 1791 181 3 10 chr6 38609123 38609415 -150670139 - AluJb SINE Alu -22 290 1 5399 197 70 40 chr6 38609415 38609476 -150670078 - L1MDa LINE L1 -5465 1075 1017 378 0 0 0 chr6 38609476 38609518 -150670036 + (TG)n Simple_repeat Simple_repeat 2 43 0 5399 197 70 40 chr6 38609518 38609883 -150669671 - L1MDa LINE L1 -5523 1017 576 1667 148 42 61 chr6 38609915 38610292 -150669262 + LTR8A LTR ERV1 358 727 0 615 246 59 27 chr6 38610294 38610481 -150669073 + LTR16C LTR ERVL 299 491 0 1522 192 21 21 chr6 38610531 38610851 -150668703 - AluJb SINE Alu 0 312 9 3686 99 8 15 chr6 38610851 38611150 -150668404 + MER41A LTR ERV1 25 321 -233 2149 114 0 14 chr6 38611150 38611470 -150668084 + AluSq SINE Alu 1 316 0 3686 99 8 15 chr6 38611470 38611703 -150667851 + MER41A LTR ERV1 321 554 0 2305 81 0 3 chr6 38611734 38612031 -150667523 - AluY SINE Alu -15 296 1 3227 134 81 29 chr6 38612177 38612759 -150666795 + LTR9 LTR ERV1 1 612 0 24 0 0 0 chr6 38612934 38612958 -150666596 + AT_rich Low_complexity Low_complexity 1 24 0 238 237 21 93 chr6 38613442 38613539 -150666015 + MIR SINE MIR 36 125 -83 1700 196 82 54 chr6 38613619 38614048 -150665506 - LTR47B LTR ERVL -2 441 1 380 246 138 7 chr6 38614326 38614464 -150665090 - L1MC4a LINE L1 -1925 5883 5728 189 0 0 0 chr6 38614464 38614485 -150665069 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 675 152 62 18 chr6 38614498 38614610 -150664944 - AluJb SINE Alu -194 118 2 1001 263 53 19 chr6 38614611 38614934 -150664620 - L1MC4a LINE L1 -2072 5736 5403 198 0 0 0 chr6 38614935 38614957 -150664597 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 319 256 126 51 chr6 38614957 38614972 -150664582 - L1MC4a LINE L1 -983 5163 5151 1552 112 0 0 chr6 38614972 38615169 -150664385 - AluSg SINE Alu -113 197 1 319 256 126 51 chr6 38615169 38615368 -150664186 - L1MC4a LINE L1 -995 5151 4933 2190 116 13 0 chr6 38615758 38616061 -150663493 - AluSx SINE Alu -5 307 1 196 294 181 1 chr6 38616301 38616485 -150663069 - MIR SINE MIR -28 234 8 211 305 76 34 chr6 38616628 38616746 -150662808 + L2 LINE L2 3150 3272 0 2192 109 17 3 chr6 38616934 38617236 -150662318 + AluSx SINE Alu 5 310 -2 334 344 0 0 chr6 38617245 38617335 -150662219 + L1MC4 LINE L1 6614 6703 -1339 2131 132 0 16 chr6 38617693 38618003 -150661551 + AluSq SINE Alu 1 305 -8 2393 97 0 6 chr6 38618003 38618313 -150661241 + AluSc SINE Alu 1 309 0 2232 101 0 11 chr6 38618330 38618643 -150660911 + AluSx SINE Alu 1 310 0 4211 150 85 80 chr6 38619152 38620078 -150659476 - MER21A LTR ERV1 0 931 1 2076 121 10 3 chr6 38620180 38620469 -150659085 - AluSx SINE Alu -21 291 1 1549 149 72 57 chr6 38620601 38620734 -150658820 - MER39 LTR ERV1 -16 691 561 2257 128 0 6 chr6 38620734 38621046 -150658508 + AluSx SINE Alu 1 310 -2 1549 149 72 57 chr6 38621046 38621261 -150658293 - MER39 LTR ERV1 -146 561 338 1382 153 5 5 chr6 38621261 38621484 -150658070 - pTR5 LTR ERV1 -2046 392 170 285 303 0 0 chr6 38621485 38621584 -150657970 - LTR30 LTR ERV1 -80 642 544 4036 156 46 49 chr6 38621585 38622549 -150657005 - pTR5 LTR ERV1 -414 2024 743 1601 149 76 6 chr6 38622549 38622865 -150656689 - MER39 LTR ERV1 -366 341 4 2022 118 13 23 chr6 38622903 38623208 -150656346 - AluSx SINE Alu -10 302 1 1920 167 0 16 chr6 38623474 38623780 -150655774 + AluJo SINE Alu 3 303 -9 242 95 24 0 chr6 38623791 38623833 -150655721 + Charlie8 DNA MER1_type 98 140 -2277 968 208 56 5 chr6 38623842 38624039 -150655515 + AluJo SINE Alu 86 292 -20 2374 94 0 7 chr6 38624499 38624797 -150654757 + AluSx SINE Alu 1 296 -16 2188 180 59 21 chr6 38625247 38625769 -150653785 + MER74A LTR ERVL 4 545 -13 1867 155 3 30 chr6 38625851 38626176 -150653378 + AluSx SINE Alu 1 312 0 1648 177 0 32 chr6 38626190 38626467 -150653087 + AluJo SINE Alu 6 273 -39 560 229 84 12 chr6 38626504 38626670 -150652884 + L2 LINE L2 3100 3277 -36 254 289 20 86 chr6 38626703 38626900 -150652654 - MLT1J LTR MaLR -215 296 113 2387 78 14 0 chr6 38627057 38627351 -150652203 - AluY SINE Alu -13 298 1 2255 117 0 7 chr6 38627392 38627700 -150651854 - AluSx SINE Alu -4 308 3 263 28 28 0 chr6 38627945 38627981 -150651573 + (TG)n Simple_repeat Simple_repeat 1 37 0 1072 187 10 30 chr6 38628159 38628357 -150651197 - AluJo SINE Alu -118 194 1 1607 131 64 17 chr6 38628357 38628654 -150650900 - MER39 LTR ERV1 -396 311 1 539 255 98 21 chr6 38629137 38629372 -150650182 + MLT1J LTR MaLR 230 482 -29 1899 122 10 56 chr6 38629390 38629693 -150649861 - AluSq SINE Alu -24 289 1 368 104 30 30 chr6 38629693 38629760 -150649794 - AluSc SINE Alu -7 292 226 7159 121 128 97 chr6 38629763 38631408 -150648146 - pTR5 LTR ERV1 0 2438 742 1801 109 0 0 chr6 38631408 38631638 -150647916 - AluSx SINE Alu -82 230 1 216 250 0 0 chr6 38631833 38631888 -150647666 + MIR SINE MIR 102 157 -51 1518 143 0 41 chr6 38632156 38632401 -150647153 - AluJb SINE Alu -21 291 57 2150 120 3 0 chr6 38632649 38632941 -150646613 + AluSx SINE Alu 1 293 -19 2398 73 3 3 chr6 38633606 38633906 -150645648 - AluSc SINE Alu -9 300 1 279 328 189 22 chr6 38634331 38634760 -150644794 - L2 LINE L2 -1004 2310 1789 1166 262 90 31 chr6 38634760 38635184 -150644370 + LTR16A LTR ERVL 2 450 0 279 328 189 22 chr6 38635184 38635242 -150644312 - L2 LINE L2 -1525 1789 1742 414 219 37 0 chr6 38635250 38635332 -150644222 + FRAM/FAM SINE Alu 1 77 -99 2065 127 27 13 chr6 38635441 38635613 -150643941 - AluJb SINE Alu -8 304 125 2331 94 3 3 chr6 38635613 38635912 -150643642 - AluSp SINE Alu -14 299 1 2065 127 27 13 chr6 38635912 38636039 -150643515 - AluJb SINE Alu -187 125 1 333 414 30 20 chr6 38636040 38636238 -150643316 - L3 LINE CR1 -1351 226 27 224 264 299 0 chr6 38637335 38637422 -150642132 - L2 LINE L2 0 3272 3160 2417 98 0 0 chr6 38637593 38637898 -150641656 + AluSg SINE Alu 1 305 -5 456 123 0 0 chr6 38637930 38638003 -150641551 + (TTC)n Simple_repeat Simple_repeat 3 75 0 365 167 0 0 chr6 38638005 38638071 -150641483 - Alu SINE Alu -1 301 236 1902 172 3 3 chr6 38638353 38638655 -150640899 + AluJo SINE Alu 5 306 -6 259 208 0 0 chr6 38638728 38638776 -150640778 + MER57A LTR ERV1 292 339 -64 1308 120 0 0 chr6 38638783 38638966 -150640588 + AluSg/x SINE Alu 121 303 -9 216 245 0 75 chr6 38639149 38639202 -150640352 - MIR3 SINE MIR -49 159 111 288 258 32 11 chr6 38639282 38639375 -150640179 + MER5B DNA MER1_type 18 112 -66 2243 70 39 3 chr6 38639742 38640026 -150639528 - AluSx SINE Alu -18 294 1 527 273 105 6 chr6 38640354 38640526 -150639028 - MIR SINE MIR -1 261 73 2189 110 0 38 chr6 38640601 38640918 -150638636 + AluSx SINE Alu 1 305 -7 672 171 39 23 chr6 38641055 38641184 -150638370 - FLAM_A SINE Alu -2 131 1 343 194 45 0 chr6 38644159 38644226 -150635328 - MER50 LTR ERV1 -6 728 659 1217 127 42 14 chr6 38644236 38644448 -150635106 - MER50 LTR ERV1 -516 218 1 1075 170 0 0 chr6 38645597 38645762 -150633792 + FRAM SINE Alu 1 165 -1 1522 251 53 2 chr6 38646299 38646717 -150632837 + L1ME3A LINE L1 5724 6162 -8 1810 92 113 35 chr6 38646739 38647021 -150632533 + AluSx SINE Alu 1 304 -8 1396 199 138 39 chr6 38647174 38647616 -150631938 + MLT2B1 LTR ERVL 5 490 -30 237 60 20 40 chr6 38647629 38647679 -150631875 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 2157 151 0 0 chr6 38647684 38647996 -150631558 - AluJo SINE Alu 0 312 1 1017 216 124 105 chr6 38648298 38648515 -150631039 + MLT1H1 LTR MaLR 5 217 -338 2480 88 0 3 chr6 38648515 38648820 -150630734 + AluSg SINE Alu 1 304 -6 1017 216 124 105 chr6 38648820 38648832 -150630722 + MLT1H1 LTR MaLR 217 227 -328 1609 167 37 0 chr6 38648832 38649101 -150630453 + AluJo SINE Alu 1 279 -33 1017 216 124 105 chr6 38649101 38649411 -150630143 + MLT1H1 LTR MaLR 227 555 0 203 268 0 0 chr6 38650099 38650140 -150629414 + MIR SINE MIR 21 61 -201 2275 126 0 0 chr6 38650143 38650453 -150629101 - AluSg SINE Alu 0 310 1 1618 193 0 39 chr6 38650453 38650757 -150628797 - AluJo SINE Alu -18 294 3 282 321 158 12 chr6 38650762 38650927 -150628627 - MIR SINE MIR -58 204 16 183 80 0 0 chr6 38651444 38651469 -150628085 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 981 199 24 15 chr6 38651495 38651526 -150628028 - MER3 DNA MER1_type 0 209 180 2254 115 0 7 chr6 38651526 38651695 -150627859 - AluSx SINE Alu -10 302 134 2392 74 0 7 chr6 38651695 38652012 -150627542 - AluY SINE Alu 0 311 2 2254 115 0 7 chr6 38652012 38652146 -150627408 - AluSx SINE Alu -178 134 1 981 199 24 15 chr6 38652146 38652320 -150627234 - MER3 DNA MER1_type -29 180 2 457 144 0 56 chr6 38653241 38653331 -150626223 - AluJ/FRAM SINE Alu -8 304 220 1430 175 20 4 chr6 38653588 38653834 -150625720 - AluJo SINE Alu -62 250 1 2429 79 7 0 chr6 38654264 38654568 -150624986 - AluSp SINE Alu -7 306 1 288 276 31 24 chr6 38654626 38654753 -150624801 - LTR67 LTR ERVL -17 540 413 289 299 41 10 chr6 38655199 38655296 -150624258 + MIR SINE MIR 156 255 -7 456 251 37 55 chr6 38655321 38655428 -150624126 - MER63A DNA MER1_type -1478 210 103 2779 163 124 67 chr6 38655428 38655528 -150624026 - MER39 LTR ERV1 0 707 614 1732 189 33 0 chr6 38655528 38655829 -150623725 - AluJb SINE Alu -1 311 1 2779 163 124 67 chr6 38655829 38655946 -150623608 - MER39 LTR ERV1 -93 614 505 2363 116 0 0 chr6 38655946 38656249 -150623305 + AluSx SINE Alu 1 303 -9 2779 163 124 67 chr6 38656249 38656281 -150623273 - MER39 LTR ERV1 -202 505 476 2553 77 3 0 chr6 38656281 38656591 -150622963 + AluSp SINE Alu 1 311 -2 2779 163 124 67 chr6 38656591 38657008 -150622546 - MER39 LTR ERV1 -231 476 1 456 251 37 55 chr6 38657008 38657063 -150622491 - MER63A DNA MER1_type -1585 103 51 648 317 147 18 chr6 38657162 38657544 -150622010 - MLT1J LTR MaLR -6 505 75 241 319 66 56 chr6 38657708 38657962 -150621592 - L2 LINE L2 -470 2844 2585 8627 64 5 7 chr6 38657962 38659036 -150620518 - MER11C LTR ERVK 0 1071 1 241 319 66 56 chr6 38659036 38659069 -150620485 - L2 LINE L2 -729 2585 2554 2281 123 0 0 chr6 38659199 38659507 -150620047 - AluSq SINE Alu -5 308 1 1681 166 0 56 chr6 38659509 38659829 -150619725 - AluJo SINE Alu -9 303 2 1035 229 117 40 chr6 38659835 38660237 -150619317 - LTR16A1 LTR ERVL 0 457 25 213 316 19 52 chr6 38660258 38660413 -150619141 - L2 LINE L2 -954 2360 2211 1666 175 4 18 chr6 38660419 38660753 -150618801 - AluJb SINE Alu 0 336 7 940 231 154 21 chr6 38660985 38661297 -150618257 - MLT1G LTR MaLR 0 590 321 1793 149 23 46 chr6 38661297 38661599 -150617955 - AluJb SINE Alu -17 295 1 940 231 154 21 chr6 38661599 38661786 -150617768 - MLT1G LTR MaLR -269 321 1 213 272 39 0 chr6 38662024 38662095 -150617459 - MIR SINE MIR -107 155 82 386 250 47 0 chr6 38663332 38663460 -150616094 - L1ME4a LINE L1 -11 6110 5977 243 306 118 63 chr6 38663472 38663819 -150615735 + L2 LINE L2 2909 3274 -39 375 303 76 0 chr6 38663895 38664014 -150615540 - L2 LINE L2 -8 3264 3137 579 284 60 22 chr6 38664146 38664329 -150615225 - MIR3 SINE MIR -3 205 16 479 315 62 45 chr6 38664331 38664659 -150614895 + L2 LINE L2 2449 2770 -544 1522 167 20 106 chr6 38664659 38664807 -150614747 - MLT1A2 LTR MaLR 0 374 215 1831 106 94 4 chr6 38664807 38665111 -150614443 - AluSc SINE Alu 0 309 1 2376 99 3 13 chr6 38665113 38665425 -150614129 - AluSx SINE Alu -3 309 1 1522 167 20 106 chr6 38665425 38665680 -150613874 - MLT1A2 LTR MaLR -160 214 3 479 315 62 45 chr6 38665680 38665751 -150613803 + L2 LINE L2 2770 2855 -459 439 315 50 50 chr6 38665862 38666103 -150613451 + L2 LINE L2 3007 3247 -25 2442 98 0 0 chr6 38666725 38667022 -150612532 + AluSq SINE Alu 1 297 -16 300 164 79 145 chr6 38667022 38667174 -150612380 + L1ME3 LINE L1 5968 6109 -53 23 0 0 0 chr6 38667195 38667218 -150612336 + AT_rich Low_complexity Low_complexity 1 23 0 1951 170 20 0 chr6 38667226 38667532 -150612022 + AluJb SINE Alu 1 312 0 1007 216 22 86 chr6 38667563 38667924 -150611630 + L1ME1 LINE L1 5811 6148 -18 26 0 0 0 chr6 38667924 38667950 -150611604 + AT_rich Low_complexity Low_complexity 1 26 0 583 122 0 0 chr6 38668914 38668996 -150610558 + AluS SINE Alu 5 86 -227 452 148 0 0 chr6 38668997 38669069 -150610485 - AluS SINE Alu -236 66 1 2404 60 0 10 chr6 38669320 38669621 -150609933 - AluY SINE Alu -13 298 1 2236 113 3 3 chr6 38669621 38669922 -150609632 - AluSx SINE Alu -11 301 1 379 359 30 0 chr6 38669954 38670085 -150609469 + MIR SINE MIR 20 154 -108 1172 227 65 36 chr6 38670193 38670501 -150609053 + MLT1I LTR MaLR 93 409 0 1851 167 3 7 chr6 38670631 38670924 -150608630 - AluJo SINE Alu -20 292 1 234 325 0 17 chr6 38670992 38671112 -150608442 + A-rich Low_complexity Low_complexity 2 119 0 2123 137 0 0 chr6 38671123 38671466 -150608088 + AluSx SINE Alu 1 343 0 416 299 131 53 chr6 38671682 38672215 -150607339 - L2 LINE L2 -20 3252 2674 507 149 6 119 chr6 38672342 38672399 -150607155 - MER83 LTR ERV1 0 448 386 2391 88 0 16 chr6 38672399 38672704 -150606850 + AluSx SINE Alu 1 300 -12 507 149 6 119 chr6 38672704 38672872 -150606682 - MER83 LTR ERV1 -62 386 114 6570 154 23 16 chr6 38672874 38673994 -150605560 - MER83-int LTR ERV1 -3741 1139 12 1604 175 73 80 chr6 38673994 38674445 -150605109 - MER83 LTR ERV1 0 448 1 374 257 59 103 chr6 38674446 38674544 -150605010 - MIR SINE MIR -19 243 142 2321 103 0 0 chr6 38674544 38674836 -150604718 - AluSc SINE Alu -17 292 1 374 257 59 103 chr6 38674836 38674990 -150604564 - MIR SINE MIR -120 142 2 218 303 98 32 chr6 38675073 38675265 -150604289 - MIR SINE MIR -56 206 1 197 234 16 47 chr6 38676123 38676187 -150603367 - MIR SINE MIR -64 198 137 2176 136 42 112 chr6 38676190 38676427 -150603127 - L1MB3 LINE L1 -7 6176 5924 1676 115 0 0 chr6 38676427 38676653 -150602901 - AluSc SINE Alu 0 309 84 2176 136 42 112 chr6 38676653 38676680 -150602874 - L1MB3 LINE L1 -259 5924 5897 1922 134 51 0 chr6 38676680 38676955 -150602599 + AluSx SINE Alu 1 289 -23 2137 99 39 0 chr6 38676963 38677247 -150602307 + AluSx SINE Alu 1 295 -17 2176 136 42 112 chr6 38677247 38677284 -150602270 - L1MB3 LINE L1 -288 5895 4790 2321 99 0 3 chr6 38677284 38677577 -150601977 - AluSp SINE Alu -18 295 4 469 243 62 82 chr6 38677582 38677697 -150601857 - L1MC4 LINE L1 -2151 5891 5775 1928 160 0 20 chr6 38677697 38678003 -150601551 - AluJb SINE Alu -12 300 1 469 243 62 82 chr6 38678003 38678130 -150601424 - L1MC4 LINE L1 -2267 5775 5654 233 146 0 0 chr6 38678101 38678149 -150601405 - L1MB7 LINE L1 -7 6177 6130 * 537 106 0 75 chr6 38678153 38678247 -150601307 + AluSg/x SINE Alu 207 293 -16 4148 141 70 43 chr6 38678247 38678278 -150601276 - L1MB7 LINE L1 -47 6137 6108 2160 108 10 0 chr6 38678278 38678574 -150600980 - AluSg SINE Alu -10 300 2 4148 141 70 43 chr6 38678574 38679247 -150600307 - L1MB7 LINE L1 -76 6108 5455 2166 94 49 3 chr6 38679247 38679533 -150600021 - AluSx SINE Alu -13 299 1 4148 141 70 43 chr6 38679533 38679755 -150599799 - L1MB7 LINE L1 -729 5455 5240 889 133 0 15 chr6 38679755 38679890 -150599664 - FLAM_C SINE Alu 0 133 1 4148 141 70 43 chr6 38679890 38680165 -150599389 - L1MB7 LINE L1 -944 5240 4912 840 126 0 0 chr6 38680218 38680337 -150599217 + FLAM_C SINE Alu 1 119 -24 195 42 0 0 chr6 38680341 38680365 -150599189 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 308 297 0 50 chr6 38680366 38680467 -150599087 + L2 LINE L2 3176 3271 -1 265 244 47 12 chr6 38680466 38680552 -150599002 - MIR SINE MIR -126 136 48 * 2393 79 17 0 chr6 38680566 38680857 -150598697 - AluSc SINE Alu -13 296 1 2209 85 17 0 chr6 38680960 38681305 -150598249 + AluSq SINE Alu 1 313 0 251 260 328 11 chr6 38681997 38682174 -150597380 - MIR SINE MIR -10 252 20 477 201 85 39 chr6 38682313 38682516 -150597038 - MER63 DNA MER1_type 0 1060 1 2206 108 34 0 chr6 38682518 38682814 -150596740 - AluSx SINE Alu -6 306 1 662 171 70 23 chr6 38683284 38683413 -150596141 - AluJo SINE Alu -93 219 85 1904 164 17 0 chr6 38683546 38683838 -150595716 + AluJb SINE Alu 1 297 -15 479 346 23 68 chr6 38684802 38684933 -150594621 - L2 LINE L2 0 3272 3157 2398 82 0 10 chr6 38684933 38685239 -150594315 - AluSq SINE Alu -10 303 1 479 346 23 68 chr6 38685239 38685373 -150594181 - L2 LINE L2 -115 3157 3019 199 276 103 0 chr6 38685406 38685464 -150594090 + L2 LINE L2 3160 3223 -49 339 314 0 0 chr6 38685685 38685771 -150593783 + MIR SINE MIR 44 129 -133 2483 67 0 0 chr6 38685876 38686175 -150593379 - AluY SINE Alu -12 299 1 2350 88 0 0 chr6 38686482 38686791 -150592763 - AluSg SINE Alu 0 309 1 1941 161 0 13 chr6 38686799 38687098 -150592456 - AluJb SINE Alu -17 295 1 2263 84 61 3 chr6 38687598 38687894 -150591660 - AluSq SINE Alu 0 313 1 1202 202 116 27 chr6 38688440 38688698 -150590856 + AluJb SINE Alu 12 292 -20 2024 136 0 7 chr6 38689056 38689350 -150590204 - AluSx SINE Alu -16 296 5 595 233 31 25 chr6 38689437 38689596 -150589958 - MIR SINE MIR 0 262 103 266 271 124 98 chr6 38689653 38689935 -150589619 + L2 LINE L2 2707 3019 -253 2197 89 41 0 chr6 38689935 38690227 -150589327 - AluSx SINE Alu -8 304 1 266 271 124 98 chr6 38690227 38690270 -150589284 + L2 LINE L2 3019 3059 -213 213 337 67 11 chr6 38690440 38690529 -150589025 - L2 LINE L2 -17 3296 3203 2461 81 0 31 chr6 38691704 38692027 -150587527 - AluSp SINE Alu 0 313 1 2420 68 3 0 chr6 38692034 38692327 -150587227 - AluSp SINE Alu -19 294 1 265 339 97 16 chr6 38692439 38692563 -150586991 - MIR3 SINE MIR -66 142 9 1113 61 0 0 chr6 38692679 38692810 -150586744 + AluY SINE Alu 2 132 -179 214 308 123 23 chr6 38692898 38693028 -150586526 + L2 LINE L2 3171 3313 0 33 43 0 0 chr6 38695123 38695170 -150584384 + GC_rich Low_complexity Low_complexity 1 47 0 1305 145 7 86 chr6 38695600 38695869 -150583685 + AluJo SINE Alu 40 287 -25 2452 78 3 0 chr6 38695877 38696185 -150583369 + AluSc SINE Alu 1 309 0 398 198 0 55 chr6 38698203 38698294 -150581260 + L2 LINE L2 3225 3310 -3 924 142 231 4 chr6 38699251 38699476 -150580078 - MER2 DNA MER2_type -36 309 34 415 244 49 0 chr6 38699567 38699649 -150579905 - AluJb SINE Alu -79 233 148 306 216 68 45 chr6 38699764 38699852 -150579702 + MER5A DNA MER1_type 18 107 -82 1200 136 39 152 chr6 38699970 38700266 -150579288 + AluJb SINE Alu 3 260 -52 2111 121 13 10 chr6 38700266 38700571 -150578983 - AluSx SINE Alu -6 306 1 1200 136 39 152 chr6 38700571 38700604 -150578950 + AluJb SINE Alu 260 295 -17 950 209 0 0 chr6 38700942 38701100 -150578454 - FRAM SINE Alu -16 160 3 2155 125 7 13 chr6 38701113 38701417 -150578137 - AluSx SINE Alu -10 302 1 2280 125 3 0 chr6 38702178 38702482 -150577072 - AluSx SINE Alu -7 305 1 2358 88 10 0 chr6 38702492 38702789 -150576765 - AluY SINE Alu -9 302 3 2268 113 0 13 chr6 38702791 38703092 -150576462 - AluSx SINE Alu -15 297 1 773 252 67 21 chr6 38703102 38703340 -150576214 - MIR SINE MIR -10 252 4 258 330 177 5 chr6 38703426 38703635 -150575919 + MIR SINE MIR 7 251 -11 2325 99 3 3 chr6 38704916 38705220 -150574334 + AluSx SINE Alu 1 304 -8 2157 121 13 10 chr6 38705684 38705982 -150573572 - AluSx SINE Alu -13 299 1 1819 161 24 3 chr6 38706073 38706365 -150573189 - AluJb SINE Alu -14 298 1 967 279 73 31 chr6 38706595 38706746 -150572808 - HAL1 LINE L1 -716 1791 1648 2170 142 0 0 chr6 38706746 38707049 -150572505 - AluSq SINE Alu -10 303 1 967 279 73 31 chr6 38707049 38707172 -150572382 - HAL1 LINE L1 -859 1648 1532 2264 124 3 0 chr6 38707172 38707478 -150572076 + AluSq SINE Alu 1 307 -6 1904 172 23 3 chr6 38707482 38707785 -150571769 + AluJb SINE Alu 1 309 -3 967 279 73 31 chr6 38707785 38707955 -150571599 - HAL1 LINE L1 -977 1530 1322 2283 98 3 0 chr6 38708022 38708319 -150571235 - AluY SINE Alu -13 298 1 1474 99 42 0 chr6 38708460 38708652 -150570902 - AluSg/x SINE Alu -40 272 73 883 285 166 45 chr6 38708658 38708885 -150570669 - HAL1 LINE L1 -1669 838 640 180 0 0 0 chr6 38708885 38708905 -150570649 + (TTGGGG)n Simple_repeat Simple_repeat 3 22 0 883 285 166 45 chr6 38708905 38709045 -150570509 - HAL1 LINE L1 -1867 640 518 1816 137 3 81 chr6 38709045 38709380 -150570174 + AluSx SINE Alu 4 312 0 883 285 166 45 chr6 38709380 38709661 -150569893 - HAL1 LINE L1 -1989 518 110 1928 182 0 3 chr6 38709681 38709994 -150569560 + AluJb SINE Alu 1 312 0 811 73 18 0 chr6 38710017 38710127 -150569427 - HY1 scRNA scRNA 0 112 1 547 16 0 0 chr6 38710156 38710220 -150569334 + AluY SINE Alu 231 294 -16 291 250 0 0 chr6 38710230 38710290 -150569264 - HAL1 LINE L1 -2438 69 10 2578 64 0 0 chr6 38710308 38710605 -150568949 - AluY SINE Alu -14 297 1 422 290 184 37 chr6 38710608 38710880 -150568674 + L2 LINE L2 2652 2963 -351 201 39 0 0 chr6 38710894 38710920 -150568634 + (ACTG)n Simple_repeat Simple_repeat 1 26 0 492 62 0 0 chr6 38710922 38710986 -150568568 + (TCCG)n Simple_repeat Simple_repeat 2 65 0 1878 127 33 11 chr6 38710999 38711274 -150568280 - AluSx SINE Alu -31 281 1 772 333 44 18 chr6 38711307 38711649 -150567905 + L2 LINE L2 2959 3309 -4 191 250 19 19 chr6 38711656 38711708 -150567846 + L2 LINE L2 3205 3256 -16 217 368 21 0 chr6 38711712 38711807 -150567747 - MIR3 SINE MIR -41 167 71 461 204 154 86 chr6 38711833 38711995 -150567559 - MER5A DNA MER1_type -8 181 9 3075 188 64 14 chr6 38712154 38712775 -150566779 + MER82 DNA MER2_type 1 652 -1 656 301 68 0 chr6 38712872 38713035 -150566519 - MER91A DNA MER1_type 0 196 23 2397 112 0 0 chr6 38713079 38713384 -150566170 - AluSg SINE Alu -5 305 1 1780 160 17 0 chr6 38713384 38713678 -150565876 - AluJb SINE Alu -13 299 1 198 0 0 0 chr6 38714551 38714573 -150564981 + (T)n Simple_repeat Simple_repeat 1 22 0 1793 109 0 0 chr6 38714573 38714803 -150564751 - AluSq SINE Alu -83 230 1 590 183 1 7 chr6 38718541 38718555 -150560999 - L1PA16 LINE L1 -134 6022 6009 1908 85 0 12 chr6 38718555 38718803 -150560751 - AluSc SINE Alu -10 299 55 590 183 1 7 chr6 38718803 38718913 -150560641 - L1PA16 LINE L1 -147 6009 5903 475 81 0 0 chr6 38718913 38718975 -150560579 - AluSc SINE Alu -246 63 2 2342 132 3 0 chr6 38719179 38719534 -150560020 + L1PA16 LINE L1 5799 6154 -12 657 160 104 0 chr6 38719582 38719688 -150559866 + FLAM_C SINE Alu 5 121 -22 186 43 0 0 chr6 38719688 38719711 -150559843 + (CAA)n Simple_repeat Simple_repeat 2 24 0 266 68 23 0 chr6 38719711 38719755 -150559799 + L1M1 LINE L1 5788 5832 -468 1672 141 30 8 chr6 38720095 38720258 -150559296 - AluJb SINE Alu -14 298 125 495 0 0 0 chr6 38720258 38720313 -150559241 + (TA)n Simple_repeat Simple_repeat 1 55 0 1672 141 30 8 chr6 38720313 38720411 -150559143 - AluJb SINE Alu -187 125 31 233 196 0 0 chr6 38720616 38720662 -150558892 + CT-rich Low_complexity Low_complexity 2 47 0 2425 112 0 0 chr6 38720718 38721030 -150558524 + AluSx SINE Alu 1 312 0 295 352 86 43 chr6 38721074 38721330 -150558224 - L2 LINE L2 -179 3093 2827 223 284 25 37 chr6 38721779 38721860 -150557694 + L2 LINE L2 3186 3265 -7 471 246 57 75 chr6 38723072 38723300 -150556254 + L2 LINE L2 3082 3305 -8 398 286 143 2 chr6 38723832 38724014 -150555540 + MIR SINE MIR 36 241 -21 1969 147 0 3 chr6 38724280 38724597 -150554957 - AluJo SINE Alu 0 316 1 21 0 0 0 chr6 38724597 38724618 -150554936 + AT_rich Low_complexity Low_complexity 1 21 0 2385 88 0 3 chr6 38724622 38724916 -150554638 + AluSg SINE Alu 1 293 -17 1981 80 53 8 chr6 38724916 38725177 -150554377 - AluSx SINE Alu -37 275 2 206 206 0 0 chr6 38725467 38725501 -150554053 + (CAGCC)n Simple_repeat Simple_repeat 1 34 0 388 252 19 19 chr6 38725607 38725710 -150553844 + L2 LINE L2 3171 3273 -40 216 324 15 0 chr6 38725948 38726016 -150553538 + MIR3 SINE MIR 132 200 -8 2424 75 10 0 chr6 38727425 38727719 -150551835 + AluSq SINE Alu 1 297 -16 283 283 6 31 chr6 38727835 38727856 -150551698 - L1MA10 LINE L1 0 6334 6314 2231 216 39 21 chr6 38727856 38728101 -150551453 - L1ME1 LINE L1 -8 6158 5919 2324 100 27 0 chr6 38728101 38728402 -150551152 + AluSq SINE Alu 1 309 -4 2231 216 39 21 chr6 38728402 38728725 -150550829 - L1ME1 LINE L1 -247 5919 5580 1165 112 7 0 chr6 38728764 38728916 -150550638 - AluSx SINE Alu -159 153 1 1487 173 12 4 chr6 38728919 38729167 -150550387 + AluJb SINE Alu 50 299 -13 2283 90 30 7 chr6 38729168 38729467 -150550087 + AluSg SINE Alu 1 306 -4 2232 75 3 14 chr6 38729881 38730187 -150549367 - AluY SINE Alu 0 304 2 487 307 58 54 chr6 38730187 38730380 -150549174 - MIR SINE MIR -36 226 29 203 268 0 0 chr6 38730400 38730441 -150549113 + MIR SINE MIR 21 61 -201 2275 126 0 0 chr6 38730444 38730754 -150548800 - AluSg SINE Alu 0 310 1 1618 193 0 39 chr6 38730754 38731058 -150548496 - AluJo SINE Alu -17 295 3 282 321 158 12 chr6 38731063 38731228 -150548326 - MIR SINE MIR -58 204 16 183 80 0 0 chr6 38731745 38731770 -150547784 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 728 207 36 31 chr6 38731796 38731827 -150547727 - MER3 DNA MER1_type 0 209 180 2254 115 0 7 chr6 38731827 38731996 -150547558 - AluSx SINE Alu -10 302 134 2392 74 0 7 chr6 38731996 38732313 -150547241 - AluY SINE Alu 0 311 2 2254 115 0 7 chr6 38732313 38732447 -150547107 - AluSx SINE Alu -178 134 1 728 207 36 31 chr6 38732447 38732608 -150546946 - MER3 DNA MER1_type -29 180 16 1800 154 25 44 chr6 38733329 38733647 -150545907 + AluJb SINE Alu 1 312 0 21 0 0 0 chr6 38736361 38736382 -150543172 + AT_rich Low_complexity Low_complexity 1 21 0 218 171 0 0 chr6 38736994 38737029 -150542525 + (CA)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr6 38737532 38737552 -150542002 + (A)n Simple_repeat Simple_repeat 1 20 0 336 91 45 76 chr6 38740555 38740621 -150538933 - U6 snRNA snRNA -43 64 1 2412 94 0 0 chr6 38741220 38741518 -150538036 - AluSc SINE Alu -11 298 1 2472 71 0 0 chr6 38742338 38742665 -150536889 + AluY SINE Alu 1 311 0 2308 106 0 0 chr6 38742878 38743170 -150536384 - AluSg SINE Alu -18 292 1 2304 99 13 0 chr6 38743422 38743724 -150535830 + AluSq SINE Alu 1 306 -7 212 358 50 17 chr6 38743771 38743891 -150535663 + L3 LINE CR1 1432 1555 -22 2236 113 0 10 chr6 38743964 38744264 -150535290 + AluSx SINE Alu 1 297 -15 2320 104 0 7 chr6 38744585 38744893 -150534661 + AluSg1 SINE Alu 3 308 -1 1656 133 118 11 chr6 38745389 38745668 -150533886 + AluSg1 SINE Alu 1 309 0 767 228 0 0 chr6 38745893 38746042 -150533512 + MER58B DNA MER1_type 193 341 0 2118 114 52 0 chr6 38746073 38746362 -150533192 - AluSp SINE Alu -8 305 2 1979 125 0 28 chr6 38746410 38746698 -150532856 - AluSx SINE Alu -32 280 1 586 305 0 61 chr6 38747515 38747712 -150531842 - MER91A DNA MER1_type -11 185 1 2009 137 17 3 chr6 38748121 38748414 -150531140 + AluJb SINE Alu 1 297 -15 2211 131 0 0 chr6 38750908 38751205 -150528349 - AluSg SINE Alu -13 297 1 1925 153 10 0 chr6 38751205 38751499 -150528055 - AluJo SINE Alu -13 299 3 2111 140 0 3 chr6 38751541 38751841 -150527713 - AluSx SINE Alu -7 305 7 2475 62 7 0 chr6 38751858 38752146 -150527408 - AluY SINE Alu -21 290 1 393 203 137 140 chr6 38752348 38752422 -150527132 - L2 LINE L2 -3 3310 3237 1532 131 0 18 chr6 38752422 38752651 -150526903 + AluJb SINE Alu 86 310 -2 2285 112 0 3 chr6 38752661 38752957 -150526597 + AluSx SINE Alu 6 300 -12 2124 142 0 3 chr6 38752958 38753269 -150526285 + AluSx SINE Alu 1 310 -2 393 203 137 140 chr6 38753269 38753496 -150526058 - L2 LINE L2 -84 3229 2997 2370 54 40 14 chr6 38753504 38753801 -150525753 + AluY SINE Alu 1 305 -6 1215 104 11 22 chr6 38753801 38753975 -150525579 + AluSg/x SINE Alu 135 308 -4 945 180 0 12 chr6 38753982 38754143 -150525411 + FRAM SINE Alu 10 168 -8 323 164 0 15 chr6 38755515 38755582 -150523972 + GA-rich Low_complexity Low_complexity 5 70 0 1772 166 19 35 chr6 38755729 38756043 -150523511 + AluJb SINE Alu 4 312 0 271 136 91 0 chr6 38756087 38756162 -150523392 + Alu SINE Alu 235 313 0 1522 165 81 4 chr6 38756210 38756471 -150523083 - AluJo SINE Alu -31 281 1 435 51 0 0 chr6 38756472 38756531 -150523023 - L1MA7 LINE L1 -461 5830 5772 2928 132 27 0 chr6 38756531 38757048 -150522506 - L1MA4 LINE L1 -1 6299 5769 988 198 18 0 chr6 38757048 38757215 -150522339 - AluSg/x SINE Alu -24 286 117 2263 125 0 0 chr6 38757240 38757543 -150522011 - AluSx SINE Alu -9 303 1 2328 115 3 0 chr6 38757547 38757851 -150521703 - AluSp SINE Alu -8 305 1 548 105 29 0 chr6 38757856 38757965 -150521589 - L1ME LINE L1 -381 5781 5669 589 237 8 0 chr6 38758001 38758132 -150521422 - AluJo SINE Alu -103 209 78 309 250 16 0 chr6 38758132 38758196 -150521358 + MER2 DNA MER2_type 281 345 0 1753 140 23 8 chr6 38758247 38758511 -150521043 + AluSx SINE Alu 1 268 -44 217 352 56 24 chr6 38760561 38760686 -150518868 + L2 LINE L2 3144 3272 0 736 142 8 0 chr6 38761520 38761647 -150517907 - L1MB3 LINE L1 -1 6182 6055 1855 179 3 16 chr6 38761658 38761970 -150517584 - AluJo SINE Alu -4 308 1 2036 136 0 7 chr6 38762495 38762789 -150516765 - AluSx SINE Alu -16 296 5 560 233 31 25 chr6 38762876 38763035 -150516519 - MIR SINE MIR 0 262 103 225 305 183 0 chr6 38763101 38763265 -150516289 + L2 LINE L2 2719 2912 -402 2210 89 41 0 chr6 38763374 38763666 -150515888 - AluSx SINE Alu -8 304 1 193 337 67 11 chr6 38763879 38763968 -150515586 - L2 LINE L2 -17 3296 3203 2467 81 0 31 chr6 38765143 38765466 -150514088 - AluSp SINE Alu 0 313 1 2433 68 3 0 chr6 38765473 38765766 -150513788 - AluSp SINE Alu -19 294 1 242 314 23 12 chr6 38765878 38765964 -150513590 - MIR SINE MIR -66 142 56 1118 61 0 0 chr6 38766118 38766249 -150513305 + AluY SINE Alu 2 132 -179 189 323 115 15 chr6 38766337 38766467 -150513087 + L2 LINE L2 3171 3313 0 537 286 169 11 chr6 38766560 38766833 -150512721 + L2 LINE L2 2998 3313 0 567 160 126 8 chr6 38767177 38767296 -150512258 + FLAM_C SINE Alu 1 133 0 219 69 0 0 chr6 38767485 38767514 -150512040 + (CAG)n Simple_repeat Simple_repeat 2 30 0 2366 103 0 0 chr6 38768320 38768622 -150510932 + AluSg SINE Alu 1 302 -8 350 203 40 0 chr6 38768923 38768997 -150510557 + Tigger5 DNA MER2_type 1 77 -2246 342 203 0 0 chr6 38768997 38769056 -150510498 - Tigger5 DNA MER2_type -2 2321 2263 2566 77 0 0 chr6 38769056 38769356 -150510198 - AluSc SINE Alu -9 300 1 236 228 18 0 chr6 38769374 38769431 -150510123 + Tigger5 DNA MER2_type 2266 2323 0 2797 23 3 7 chr6 38769665 38769975 -150509579 + AluY SINE Alu 1 309 -2 1939 165 0 7 chr6 38770268 38770571 -150508983 - AluJb SINE Alu -6 306 6 823 232 79 21 chr6 38770572 38770762 -150508792 - MER58C DNA MER1_type -5 210 10 438 337 55 6 chr6 38770779 38770960 -150508594 + MIR3 SINE MIR 19 208 0 2357 109 0 0 chr6 38770999 38771301 -150508253 - AluY SINE Alu -7 304 3 2613 66 0 0 chr6 38771651 38771956 -150507598 - AluY SINE Alu -6 305 1 216 200 0 0 chr6 38771999 38772044 -150507510 + GA-rich Low_complexity Low_complexity 3 47 0 2049 151 3 0 chr6 38772295 38772593 -150506961 - AluJb SINE Alu -13 299 1 820 161 0 8 chr6 38774366 38774490 -150505064 + FLAM_C SINE Alu 1 123 -20 1228 191 5 0 chr6 38774508 38774712 -150504842 + AluJb SINE Alu 85 289 -23 1894 109 91 0 chr6 38776593 38776867 -150502687 + AluSx SINE Alu 1 299 -13 533 161 0 21 chr6 38776870 38776963 -150502591 + AluJ/FLAM SINE Alu 2 92 -220 2089 106 39 3 chr6 38776963 38777247 -150502307 + AluSp SINE Alu 1 294 -19 1522 139 9 0 chr6 38777248 38777463 -150502091 + AluSg/x SINE Alu 80 296 -14 2387 89 7 0 chr6 38777498 38777801 -150501753 - AluSg SINE Alu -5 305 1 279 221 188 19 chr6 38777801 38777955 -150501599 - L1ME4a LINE L1 -108 6013 5834 2304 90 7 0 chr6 38777970 38778258 -150501296 - AluY SINE Alu -20 291 2 267 242 33 0 chr6 38778280 38778371 -150501183 - L1ME4a LINE L1 -525 5596 5503 1840 150 24 24 chr6 38778613 38778906 -150500648 - AluSx SINE Alu -19 293 1 2075 47 0 0 chr6 38778984 38779220 -150500334 + AluY SINE Alu 63 298 -13 2176 149 7 0 chr6 38781143 38781451 -150498103 - AluSx SINE Alu -2 310 1 1572 163 63 53 chr6 38781451 38781750 -150497804 - AluJo SINE Alu -9 303 1 2192 100 21 7 chr6 38782623 38782914 -150496640 + AluSg SINE Alu 1 295 -15 515 191 63 24 chr6 38782971 38783097 -150496457 + MIR SINE MIR 85 215 -47 22 0 0 0 chr6 38783124 38783146 -150496408 + AT_rich Low_complexity Low_complexity 1 22 0 2276 111 3 0 chr6 38783146 38783444 -150496110 - AluSx SINE Alu -13 299 1 822 165 0 0 chr6 38783660 38783793 -150495761 - FLAM_C SINE Alu 0 133 1 1539 173 4 8 chr6 38784061 38784316 -150495238 - AluJo SINE Alu -16 296 43 246 274 21 21 chr6 38784327 38784422 -150495132 - L2 LINE L2 -285 2987 2893 189 303 42 70 chr6 38784504 38784646 -150494908 - L2 LINE L2 -547 2767 2630 2320 105 0 0 chr6 38784807 38785103 -150494451 + AluSp SINE Alu 1 296 -17 2134 89 43 0 chr6 38785520 38785802 -150493752 + AluSq SINE Alu 1 294 -19 2378 81 16 13 chr6 38785806 38786115 -150493439 - AluSq SINE Alu -3 310 1 2250 101 0 10 chr6 38786151 38786315 -150493239 - AluSc SINE Alu -14 295 134 2443 75 0 0 chr6 38786315 38786610 -150492944 - AluY SINE Alu -15 296 2 2250 101 0 10 chr6 38786610 38786743 -150492811 - AluSc SINE Alu -175 134 1 406 187 28 165 chr6 38787168 38787269 -150492285 + MER5A DNA MER1_type 31 144 -45 2288 123 0 19 chr6 38787269 38787587 -150491967 - AluSx SINE Alu 0 312 1 406 187 28 165 chr6 38787587 38787601 -150491953 + MER5A DNA MER1_type 144 158 -31 2484 87 6 0 chr6 38787601 38787912 -150491642 - AluSp SINE Alu 0 313 1 406 187 28 165 chr6 38787912 38787977 -150491577 + MER5A DNA MER1_type 158 187 -2 2118 96 53 0 chr6 38788062 38788344 -150491210 - AluSq SINE Alu -16 297 1 857 209 12 117 chr6 38788414 38788663 -150490891 - AluJo SINE Alu -89 223 1 1880 136 46 0 chr6 38788698 38788978 -150490576 - AluSx SINE Alu -19 293 1 1884 154 17 3 chr6 38788978 38789269 -150490285 - AluJo SINE Alu -7 305 10 2159 108 0 7 chr6 38789694 38789982 -150489572 + AluSg SINE Alu 1 286 -24 180 0 0 0 chr6 38792088 38792108 -150487446 + (GGA)n Simple_repeat Simple_repeat 1 20 0 2589 67 0 0 chr6 38795180 38795480 -150484074 + AluY SINE Alu 1 300 -11 830 93 0 0 chr6 38796743 38796861 -150482693 + L1PB1 LINE L1 6017 6134 -17 2041 156 0 10 chr6 38797585 38797893 -150481661 - AluJb SINE Alu -7 305 1 2354 100 0 0 chr6 38797903 38798202 -150481352 - AluY SINE Alu -12 299 1 551 218 124 42 chr6 38799645 38799659 -150479895 - L2 LINE L2 -576 2738 2727 2422 95 0 0 chr6 38799659 38799963 -150479591 - AluSg SINE Alu -6 304 1 551 218 124 42 chr6 38799963 38800141 -150479413 - L2 LINE L2 -587 2727 2530 * 983 240 43 43 chr6 38800137 38800441 -150479113 + L2 LINE L2 2398 2701 -613 2459 87 0 6 chr6 38800467 38800778 -150478776 + AluSg SINE Alu 1 309 -1 822 167 0 15 chr6 38800778 38800910 -150478644 - AluJo/FLAM SINE Alu -182 130 1 2246 75 0 4 chr6 38800919 38801229 -150478325 - AluY SINE Alu 0 313 5 854 296 113 21 chr6 38801229 38801778 -150477776 + L2 LINE L2 2683 3313 0 1123 286 206 11 chr6 38801802 38802369 -150477185 - L2 LINE L2 -807 2507 1830 181 264 94 0 chr6 38802385 38802438 -150477116 - MIR SINE MIR -158 104 47 315 146 21 188 chr6 38802439 38802583 -150476971 + L1MA10 LINE L1 6215 6334 0 261 325 136 70 chr6 38804097 38804360 -150475194 - L2 LINE L2 -9 3263 3019 1759 170 11 0 chr6 38804360 38804637 -150474917 - AluJo SINE Alu -21 291 12 261 325 136 70 chr6 38804637 38805253 -150474301 - L2 LINE L2 -253 3019 2289 14802 62 6 1 chr6 38805295 38807974 -150471580 + L1PA6 LINE L1 3464 6152 -2 774 210 58 43 chr6 38807993 38808123 -150471431 - Charlie7 DNA MER1_type -81 2531 2404 2518 77 0 3 chr6 38808123 38808434 -150471120 + AluSg SINE Alu 1 310 0 774 210 58 43 chr6 38808434 38808631 -150470923 - Charlie7 DNA MER1_type -208 2404 2199 2298 77 44 7 chr6 38808641 38808939 -150470615 + AluY SINE Alu 3 311 0 187 324 56 0 chr6 38809410 38809481 -150470073 + MIR SINE MIR 113 187 -75 2739 48 0 0 chr6 38809484 38809795 -150469759 + AluY SINE Alu 1 311 0 742 153 38 30 chr6 38809806 38809937 -150469617 + FLAM_C SINE Alu 2 133 0 2295 97 3 3 chr6 38810367 38810676 -150468878 + AluSq SINE Alu 1 309 -4 2039 134 67 6 chr6 38810940 38811298 -150468256 + LTR8A LTR ERV1 2 381 -346 1096 165 28 0 chr6 38811298 38811480 -150468074 - AluJo SINE Alu -7 305 119 885 150 0 0 chr6 38811515 38811648 -150467906 - AluJo SINE Alu -179 133 1 1115 174 83 88 chr6 38811648 38811818 -150467736 + LTR8A LTR ERV1 379 548 -179 1581 175 102 0 chr6 38811818 38812092 -150467462 - AluJo SINE Alu -10 302 1 1115 174 83 88 chr6 38812092 38812272 -150467282 + LTR8A LTR ERV1 548 727 0 2384 92 0 0 chr6 38812458 38812752 -150466802 - AluSx SINE Alu -18 294 1 281 258 82 0 chr6 38812773 38812870 -150466684 + L1ME4a LINE L1 5533 5637 -484 736 194 12 42 chr6 38812877 38813042 -150466512 - MLT1A1 LTR MaLR 0 365 206 1961 133 9 22 chr6 38813054 38813449 -150466105 - AluJo SINE Alu 0 391 1 674 190 89 17 chr6 38813467 38813646 -150465908 - MLT1A1 LTR MaLR -182 192 1 1772 164 14 17 chr6 38813709 38813896 -150465658 - AluJb SINE Alu 0 312 136 2445 91 0 0 chr6 38813896 38814193 -150465361 - AluSg SINE Alu -13 297 1 1772 164 14 17 chr6 38814193 38814325 -150465229 - AluJb SINE Alu -176 136 5 381 236 101 104 chr6 38814399 38814664 -150464890 + L1ME4a LINE L1 5761 6026 -95 2163 111 0 35 chr6 38814664 38814980 -150464574 - AluSx SINE Alu -7 305 1 381 236 101 104 chr6 38814980 38815002 -150464552 + L1ME4a LINE L1 6026 6047 -74 1574 173 91 58 chr6 38815005 38815034 -150464520 - MLT2D LTR ERVL -4 410 383 231 36 0 0 chr6 38815034 38815062 -150464492 + (CATA)n Simple_repeat Simple_repeat 2 29 0 1574 173 91 58 chr6 38815062 38815426 -150464128 - MLT2D LTR ERVL -31 383 4 206 230 0 11 chr6 38815508 38815595 -150463959 + (TA)n Simple_repeat Simple_repeat 1 86 0 1858 169 125 0 chr6 38815626 38815994 -150463560 + MLT2D LTR ERVL 1 414 0 276 303 92 32 chr6 38816153 38816338 -150463216 - L2 LINE L2 -252 3061 2866 1049 158 19 0 chr6 38816405 38816563 -150462991 - AluJb SINE Alu -15 297 137 2184 124 0 3 chr6 38816566 38816865 -150462689 - AluSx SINE Alu -14 298 1 863 245 108 99 chr6 38816869 38817169 -150462385 + L1MC4a LINE L1 6411 6707 -1101 2417 88 3 0 chr6 38817169 38817474 -150462080 + AluY SINE Alu 1 306 -5 863 245 108 99 chr6 38817474 38817487 -150462067 + L1MC4a LINE L1 6707 6718 -1090 2102 148 3 22 chr6 38817487 38817805 -150461749 + AluSx SINE Alu 1 312 0 863 245 108 99 chr6 38817805 38817964 -150461590 + L1MC4a LINE L1 6718 6888 -920 1764 103 0 0 chr6 38817976 38818200 -150461354 + AluSc SINE Alu 76 299 -10 233 240 27 0 chr6 38818200 38818275 -150461279 + L1MC4 LINE L1 6962 7038 -1004 1653 138 83 0 chr6 38818290 38818543 -150461011 + AluJb SINE Alu 24 297 -15 292 181 103 43 chr6 38818563 38818679 -150460875 + L1MC5 LINE L1 6940 7062 -899 644 96 0 0 chr6 38818697 38818780 -150460774 + AluS SINE Alu 2 84 -228 564 242 97 118 chr6 38818805 38819426 -150460128 + L1MC4 LINE L1 7098 7730 -312 319 123 0 0 chr6 38819426 38819483 -150460071 + L1MA8 LINE L1 6225 6281 -10 564 242 97 118 chr6 38819483 38819646 -150459908 + L1MC4 LINE L1 7730 7867 -175 2239 122 0 3 chr6 38819646 38819942 -150459612 - AluSx SINE Alu -17 295 1 564 242 97 118 chr6 38819942 38819969 -150459585 + L1MC4 LINE L1 7867 7893 -149 2057 124 0 0 chr6 38819981 38820255 -150459299 + AluSx SINE Alu 24 297 -15 3026 163 19 74 chr6 38820264 38820376 -150459178 + L1MA7 LINE L1 5510 5627 -670 2418 100 0 0 chr6 38820376 38820676 -150458878 + AluSq SINE Alu 1 300 -13 3026 163 19 74 chr6 38820676 38820853 -150458701 + L1MA7 LINE L1 5627 5812 -485 2453 87 0 3 chr6 38820853 38821165 -150458389 + AluY SINE Alu 1 311 0 3026 163 19 74 chr6 38821165 38821631 -150457923 + L1MA7 LINE L1 5812 6180 -117 2523 61 0 3 chr6 38821631 38821927 -150457627 + AluSq SINE Alu 1 295 -18 3026 163 19 74 chr6 38821927 38822030 -150457524 + L1MA7 LINE L1 6180 6287 -10 21 0 0 0 chr6 38822042 38822063 -150457491 + AT_rich Low_complexity Low_complexity 1 21 0 377 231 149 15 chr6 38822095 38822229 -150457325 + L1MC4 LINE L1 7891 8042 0 29 47 0 0 chr6 38822410 38822453 -150457101 + AT_rich Low_complexity Low_complexity 1 43 0 446 312 246 22 chr6 38822848 38824154 -150455400 + L2 LINE L2 1494 3085 -187 255 343 206 9 chr6 38824256 38824489 -150455065 + L2 LINE L2 2994 3272 0 275 297 0 0 chr6 38826514 38826578 -150452976 + L2 LINE L2 3242 3305 -8 336 172 0 91 chr6 38827153 38827252 -150452302 + CT-rich Low_complexity Low_complexity 2 91 0 340 309 127 34 chr6 38827407 38827434 -150452120 - MIR SINE MIR 0 262 239 213 39 0 0 chr6 38827434 38827460 -150452094 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 340 309 127 34 chr6 38827460 38827668 -150451886 - MIR SINE MIR -23 239 5 590 266 133 5 chr6 38828643 38828861 -150450693 + MIR SINE MIR 1 246 -16 2352 91 0 19 chr6 38828894 38829201 -150450353 + AluSq SINE Alu 1 301 -12 1139 273 96 13 chr6 38829286 38829736 -150449818 + L2 LINE L2 720 1206 -2108 286 205 171 26 chr6 38829786 38829903 -150449651 + L2 LINE L2 1705 1838 -1476 2083 141 3 3 chr6 38829999 38830304 -150449250 - AluSx SINE Alu -7 305 1 294 306 10 0 chr6 38830415 38830513 -150449041 - L1ME3A LINE L1 -208 5962 5864 2776 251 140 36 chr6 38830527 38830832 -150448722 + L2 LINE L2 1826 2098 -1215 2193 117 7 7 chr6 38830832 38831132 -150448422 - AluSx SINE Alu -12 300 1 2776 251 140 36 chr6 38831132 38832150 -150447404 + L2 LINE L2 2098 3313 0 246 264 104 9 chr6 38832686 38832792 -150446762 + MIR SINE MIR 145 260 -2 290 304 78 46 chr6 38832794 38832878 -150446676 - MIR SINE MIR 0 262 182 1874 163 14 10 chr6 38832878 38833172 -150446382 - AluJo SINE Alu -17 295 1 290 304 78 46 chr6 38833172 38833313 -150446241 - MIR SINE MIR -80 182 34 256 208 21 0 chr6 38833746 38833794 -150445760 + MER91 DNA MER1_type 74 122 -18 374 357 7 0 chr6 38834906 38835060 -150444494 + (TATG)n Simple_repeat Simple_repeat 2 156 0 222 227 76 30 chr6 38835126 38835192 -150444362 - MIR SINE MIR -187 75 7 21 57 0 0 chr6 38837267 38837302 -150442252 + GC_rich Low_complexity Low_complexity 1 35 0 439 264 82 0 chr6 38839325 38839484 -150440070 + L1M4 LINE L1 4494 4665 -1481 504 90 10 90 chr6 38839488 38839588 -150439966 - AluSp SINE Alu -181 132 41 22 35 0 0 chr6 38839596 38839625 -150439929 + AT_rich Low_complexity Low_complexity 1 29 0 249 371 46 8 chr6 38839956 38840193 -150439361 - MER41B LTR ERV1 -209 426 181 2217 109 10 16 chr6 38840236 38840548 -150439006 - AluSg SINE Alu 0 310 1 475 132 44 172 chr6 38840554 38840613 -150438941 + Charlie1 DNA MER1_type 2524 2589 -172 1873 79 0 0 chr6 38840613 38840840 -150438714 + AluSc SINE Alu 67 293 -16 475 132 44 172 chr6 38840840 38840994 -150438560 + Charlie1 DNA MER1_type 2589 2697 -64 2108 82 4 4 chr6 38840994 38841262 -150438292 - AluSp SINE Alu -45 268 1 475 132 44 172 chr6 38841262 38841320 -150438234 + Charlie1 DNA MER1_type 2697 2761 0 21 0 0 0 chr6 38841631 38841652 -150437902 + GC_rich Low_complexity Low_complexity 1 21 0 2247 91 0 24 chr6 38843794 38844090 -150435464 - AluSg SINE Alu -21 289 1 2153 112 0 13 chr6 38845001 38845314 -150434240 + AluY SINE Alu 1 309 -2 1250 107 141 0 chr6 38845503 38845709 -150433845 + MSTC LTR MaLR 1 235 -193 966 238 11 48 chr6 38845712 38846064 -150433490 + MSTD-int LTR MaLR 945 1365 -320 234 303 45 0 chr6 38846417 38846506 -150433048 + MIR SINE MIR 43 135 -73 578 228 29 7 chr6 38846562 38846698 -150432856 + MSTD LTR MaLR 1 139 -257 673 244 70 0 chr6 38846728 38846900 -150432654 + MSTD LTR MaLR 206 389 -7 2319 106 3 0 chr6 38847016 38847309 -150432245 - AluSq SINE Alu -12 301 8 239 323 110 16 chr6 38847560 38847687 -150431867 - L2 LINE L2 -9 3304 3166 3274 98 121 0 chr6 38847767 38848237 -150431317 - MER1A DNA MER1_type 0 527 1 2289 95 3 7 chr6 38849116 38849532 -150430022 + AluSp SINE Alu 3 417 0 8975 78 17 5 chr6 38850145 38851323 -150428231 - SVA Other Other 0 1386 195 196 279 32 110 chr6 38851384 38851424 -150428130 + MIR SINE MIR 65 107 -155 2492 83 3 3 chr6 38851424 38851737 -150427817 - AluSp SINE Alu 0 313 1 196 279 32 110 chr6 38851737 38851850 -150427704 + MIR SINE MIR 107 206 -56 2112 116 0 0 chr6 38851962 38852265 -150427289 - AluY SINE Alu -8 303 1 24 0 0 0 chr6 38853406 38853430 -150426124 + AT_rich Low_complexity Low_complexity 1 24 0 2307 93 7 0 chr6 38853781 38854091 -150425463 - AluSx SINE Alu 0 312 1 2407 48 10 0 chr6 38854097 38854392 -150425162 - AluY SINE Alu -13 298 1 21 57 0 0 chr6 38854554 38854589 -150424965 + AT_rich Low_complexity Low_complexity 1 35 0 2200 100 0 3 chr6 38855200 38855499 -150424055 - AluSc SINE Alu -11 298 1 2415 61 0 0 chr6 38855738 38856031 -150423523 + AluY SINE Alu 1 293 -18 2109 122 3 0 chr6 38856516 38856819 -150422735 - AluSp SINE Alu -9 304 1 971 119 0 0 chr6 38857036 38857170 -150422384 + AluSx SINE Alu 1 134 -179 2236 98 3 3 chr6 38857171 38857476 -150422078 + AluSq SINE Alu 1 305 -8 1067 141 0 0 chr6 38857536 38857692 -150421862 + AluSx SINE Alu 119 274 -36 201 74 0 0 chr6 38857702 38857729 -150421825 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1173 130 0 22 chr6 38858321 38858481 -150421073 - AluSg/x SINE Alu -19 291 134 2089 103 9 28 chr6 38858481 38858683 -150420871 - AluSp SINE Alu 0 313 118 2132 94 0 38 chr6 38858683 38859001 -150420553 - AluSx SINE Alu -6 306 1 2089 103 9 28 chr6 38859001 38859117 -150420437 - AluSp SINE Alu -195 118 1 1173 130 0 22 chr6 38859117 38859140 -150420414 - AluSg/x SINE Alu -176 134 112 451 111 0 100 chr6 38859142 38859219 -150420335 + AluJ/FRAM SINE Alu 227 295 -17 2118 122 3 0 chr6 38859219 38859530 -150420024 + AluSx SINE Alu 1 312 0 451 111 0 100 chr6 38859530 38859542 -150420012 + AluJ/FRAM SINE Alu 295 307 -5 191 276 10 0 chr6 38859691 38859789 -150419765 + (TG)n Simple_repeat Simple_repeat 1 99 0 1610 270 111 15 chr6 38860360 38860901 -150418653 + MLT1E LTR MaLR 1 593 0 1835 138 16 13 chr6 38861632 38861807 -150417747 - AluSx SINE Alu -6 306 128 255 31 0 0 chr6 38861807 38861839 -150417715 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1835 138 16 13 chr6 38861839 38861967 -150417587 - AluSx SINE Alu -184 128 2 270 160 128 43 chr6 38862378 38862472 -150417082 + L1MC5 LINE L1 7834 7935 -26 856 155 0 0 chr6 38862491 38862620 -150416934 + FLAM_C SINE Alu 1 129 -4 1108 218 123 3 chr6 38862647 38862932 -150416622 + L1MD3 LINE L1 6783 7101 -894 579 291 69 52 chr6 38862958 38863377 -150416177 + L1M4 LINE L1 810 1235 -5620 920 83 0 0 chr6 38863405 38863525 -150416029 + AluSp/q SINE Alu 175 294 -19 291 225 0 79 chr6 38863543 38863632 -150415922 + L1M4 LINE L1 1205 1286 -5573 * 684 277 39 9 chr6 38863629 38863860 -150415694 + L1M4 LINE L1 1216 1453 -5406 1968 135 7 0 chr6 38863860 38864157 -150415397 + AluSx SINE Alu 1 299 -13 455 245 27 161 chr6 38864159 38864337 -150415217 + L1M4 LINE L1 1985 2185 -4774 2242 95 3 0 chr6 38864337 38864631 -150414923 + AluSg SINE Alu 1 295 -15 455 245 27 161 chr6 38864631 38864742 -150414812 + L1M4 LINE L1 2185 2198 -4761 1659 159 0 53 chr6 38864742 38865062 -150414492 + AluJo SINE Alu 10 312 0 455 245 27 161 chr6 38865062 38865212 -150414342 + L1M4 LINE L1 2198 2366 -4593 979 157 0 0 chr6 38865245 38865398 -150414156 + AluSg/x SINE Alu 135 287 -25 909 180 6 17 chr6 38865505 38865683 -150413871 - FRAM SINE Alu -7 169 1 1645 147 0 0 chr6 38865977 38866236 -150413318 + AluSx SINE Alu 1 259 -53 634 101 10 20 chr6 38866287 38866386 -150413168 + MER4A LTR ERV1 1 98 -566 1876 109 8 78 chr6 38866387 38866461 -150413093 + MER4A LTR ERV1 264 342 -322 2172 98 0 13 chr6 38866461 38866768 -150412786 + AluSx SINE Alu 1 303 -9 1876 109 8 78 chr6 38866768 38867061 -150412493 + MER4A LTR ERV1 342 664 0 413 19 19 0 chr6 38867655 38867709 -150411845 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 2277 65 7 10 chr6 38867709 38868015 -150411539 - AluSp SINE Alu -8 305 1 1611 133 6 91 chr6 38868730 38869060 -150410494 - AluSx SINE Alu -10 302 1 189 0 0 0 chr6 38869060 38869081 -150410473 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1963 115 4 4 chr6 38869083 38869361 -150410193 - AluSx SINE Alu -32 280 3 2122 121 7 0 chr6 38869391 38869698 -150409856 - AluSq SINE Alu -4 309 1 324 167 23 0 chr6 38869708 38869779 -150409775 - AluJb SINE Alu -2 300 240 789 223 4 51 chr6 38869787 38870060 -150409494 + pTR5 LTR ERV1 769 1028 -1410 4612 78 11 211 chr6 38870142 38871175 -150408379 + LTR12 LTR ERV1 1 826 0 1478 146 8 4 chr6 38871175 38871415 -150408139 - AluJb SINE Alu -71 241 1 2072 121 3 0 chr6 38871710 38872008 -150407546 - AluSq SINE Alu -14 299 1 36304 89 20 24 chr6 38872796 38876385 -150403169 + L1PA6 LINE L1 22 3654 -2500 249 211 13 53 chr6 38876385 38876461 -150403093 - MSTB2 LTR MaLR -249 208 136 36304 89 20 24 chr6 38876461 38878951 -150400603 + L1PA6 LINE L1 3654 6152 -2 786 219 62 80 chr6 38878970 38879100 -150400454 - Charlie7 DNA MER1_type -81 2531 2400 2366 77 0 3 chr6 38879100 38879411 -150400143 + AluSg SINE Alu 1 310 0 786 219 62 80 chr6 38879411 38879618 -150399936 - Charlie7 DNA MER1_type -212 2400 2203 2155 77 44 7 chr6 38879618 38879916 -150399638 + AluY SINE Alu 3 311 0 786 219 62 80 chr6 38879916 38880062 -150399492 - Charlie7 DNA MER1_type -409 2203 2056 187 324 56 0 chr6 38880387 38880458 -150399096 + MIR SINE MIR 113 187 -75 2589 48 0 0 chr6 38880461 38880772 -150398782 + AluY SINE Alu 1 311 0 742 156 39 0 chr6 38880796 38880924 -150398630 + FLAM_C SINE Alu 11 143 0 2149 97 3 3 chr6 38881344 38881653 -150397901 + AluSq SINE Alu 1 309 -4 2155 131 67 6 chr6 38881917 38882275 -150397279 + LTR8A LTR ERV1 2 381 -346 1008 162 28 0 chr6 38882278 38882457 -150397097 - AluJo SINE Alu -10 302 119 821 150 0 0 chr6 38882492 38882625 -150396929 - AluJo SINE Alu -179 133 1 1217 177 71 77 chr6 38882625 38882795 -150396759 + LTR8A LTR ERV1 379 548 -179 1442 175 102 0 chr6 38882795 38883069 -150396485 - AluJo SINE Alu -10 302 1 1217 177 71 77 chr6 38883069 38883249 -150396305 + LTR8A LTR ERV1 548 727 0 2242 92 0 0 chr6 38883435 38883729 -150395825 - AluSx SINE Alu -18 294 1 302 258 82 0 chr6 38883750 38883847 -150395707 + L1ME LINE L1 5533 5637 -484 788 177 17 57 chr6 38883854 38884029 -150395525 - MLT1A1 LTR MaLR 0 365 198 1806 133 9 22 chr6 38884031 38884426 -150395128 - AluJo SINE Alu 0 391 1 729 190 89 17 chr6 38884444 38884623 -150394931 - MLT1A1 LTR MaLR -182 192 1 896 164 23 28 chr6 38884686 38884873 -150394681 - AluJb SINE Alu 0 312 136 2298 91 0 0 chr6 38884873 38885170 -150394384 - AluSg SINE Alu -13 297 1 896 164 23 28 chr6 38885170 38885187 -150394367 - AluJb SINE Alu -176 136 120 601 49 0 0 chr6 38885187 38885268 -150394286 + AluY SINE Alu 226 306 -6 1287 146 103 53 chr6 38885270 38885571 -150393983 + L1ME3A LINE L1 5392 5707 -652 198 0 0 0 chr6 38885589 38885611 -150393943 + (A)n Simple_repeat Simple_repeat 1 22 0 266 235 139 42 chr6 38885849 38886015 -150393539 + L1ME3A LINE L1 5988 6169 -1 260 160 0 40 chr6 38886776 38886826 -150392728 - MLT2B1 LTR ERVL 0 520 473 740 236 16 16 chr6 38886826 38887008 -150392546 - MLT2D LTR ERVL -232 182 1 185 227 53 53 chr6 38887008 38887083 -150392471 + MIR SINE MIR 180 254 -8 572 188 116 0 chr6 38887861 38887973 -150391581 + FLAM_C SINE Alu 3 127 -16 211 295 26 0 chr6 38888561 38888639 -150390915 - MIR3 SINE MIR -43 165 86 514 312 59 21 chr6 38889069 38889444 -150390110 + HAL1 LINE L1 1841 2229 -278 2256 212 35 17 chr6 38894403 38894926 -150384628 - L1MC3 LINE L1 -1 7784 7249 1121 244 123 51 chr6 38894926 38895397 -150384157 - MLT1D LTR MaLR 0 505 1 2256 212 35 17 chr6 38895397 38895416 -150384138 - L1MC3 LINE L1 -536 7249 7232 284 222 19 130 chr6 38895887 38896049 -150383505 + HUERS-P3 LTR ERV1 633 776 -4095 767 152 0 38 chr6 38896062 38896185 -150383369 + AluJo SINE Alu 10 129 -183 1854 151 3 0 chr6 38896185 38896497 -150383057 + AluSp SINE Alu 1 313 0 2165 96 3 6 chr6 38896629 38896941 -150382613 + AluY SINE Alu 1 311 0 1696 91 4 21 chr6 38897155 38897397 -150382157 - AluSx SINE Alu -11 301 64 2617 124 36 14 chr6 38897467 38897886 -150381668 - MSTA LTR MaLR 0 428 1 394 334 52 36 chr6 38898009 38898485 -150381069 + HUERS-P3 LTR ERV1 2546 2708 -4093 3585 165 20 28 chr6 38898690 38898822 -150380732 + L1M1 LINE L1 3076 3208 -4357 1356 216 0 10 chr6 38898822 38899113 -150380441 + AluJb SINE Alu 1 288 -24 3585 165 20 28 chr6 38899113 38900259 -150379295 + L1M1 LINE L1 3208 4350 -3215 1426 199 42 42 chr6 38900262 38900593 -150378961 + L1PB1 LINE L1 13 343 -7222 186 311 68 0 chr6 38901168 38901242 -150378312 - MIR SINE MIR -72 136 58 215 77 0 26 chr6 38901550 38901589 -150377965 + (CAA)n Simple_repeat Simple_repeat 2 39 0 510 303 102 39 chr6 38901649 38902220 -150377334 + HAL1 LINE L1 1841 2447 -60 902 120 0 51 chr6 38907069 38907227 -150372327 - AluSg/x SINE Alu -42 268 119 216 0 0 0 chr6 38907227 38907251 -150372303 + (T)n Simple_repeat Simple_repeat 1 24 0 530 148 0 0 chr6 38907251 38907339 -150372215 - AluJb SINE Alu -179 133 46 244 104 0 0 chr6 38908540 38908588 -150370966 - LTR66 LTR ERVL -169 441 394 1044 159 0 0 chr6 38908594 38908826 -150370728 + (TA)n Simple_repeat Simple_repeat 2 233 0 2582 27 0 7 chr6 38911522 38911834 -150367720 - AluYa5 SINE Alu 0 311 1 15151 197 13 21 chr6 38911834 38912422 -150367132 + L1PB1 LINE L1 2652 3243 -4327 2362 97 7 0 chr6 38912422 38912721 -150366833 - AluY SINE Alu -9 302 2 15151 197 13 21 chr6 38912721 38913768 -150365786 + L1PB1 LINE L1 3243 4296 -3274 2028 139 0 17 chr6 38913768 38914069 -150365485 + AluSx SINE Alu 7 302 -10 15151 197 13 21 chr6 38914069 38914651 -150364903 + L1PB1 LINE L1 4296 4881 -2689 7884 48 3 11 chr6 38914651 38916203 -150363351 + SVA Other Other 1 1383 -3 15151 197 13 21 chr6 38916203 38916223 -150363331 + L1PB1 LINE L1 4881 4900 -2670 2326 94 0 25 chr6 38916223 38916543 -150363011 + AluSp SINE Alu 1 312 -1 15151 197 13 21 chr6 38916543 38916776 -150362778 + L1PB1 LINE L1 4900 5133 -2437 2387 84 3 0 chr6 38916776 38917072 -150362482 + AluSp SINE Alu 1 297 -16 15151 197 13 21 chr6 38917072 38917292 -150362262 + L1PB1 LINE L1 5133 5353 -2217 2183 85 31 7 chr6 38917292 38917586 -150361968 + AluY SINE Alu 1 301 -10 15151 197 13 21 chr6 38917586 38919777 -150359777 + L1PB1 LINE L1 5353 7570 0 1371 189 94 103 chr6 38919808 38920362 -150359192 + L1M4 LINE L1 4477 5025 -1121 845 158 43 0 chr6 38920414 38920598 -150358956 - Charlie5 DNA MER1_type -49 2563 2372 506 335 71 18 chr6 38921011 38921348 -150358206 + L2 LINE L2 2959 3313 0 2073 222 42 10 chr6 38922792 38923297 -150356257 - L1MC3 LINE L1 -16 7769 7249 848 187 143 118 chr6 38923316 38923680 -150355874 - MLT1D LTR MaLR -17 373 1 237 272 64 48 chr6 38924006 38924212 -150355342 - MER54B LTR ERVL -541 252 67 265 121 30 121 chr6 38924263 38924329 -150355225 + MER65-int LTR ERV1 713 772 -4099 756 130 0 82 chr6 38924346 38924492 -150355062 + FLAM_C SINE Alu 10 143 0 2506 74 3 0 chr6 38924935 38925245 -150354309 + AluY SINE Alu 1 311 0 3126 106 19 6 chr6 38925252 38925363 -150354191 + L1PB1 LINE L1 5674 5782 -369 306 107 0 0 chr6 38925363 38925419 -150354135 + (TA)n Simple_repeat Simple_repeat 1 56 0 3126 106 19 6 chr6 38925419 38925777 -150353777 + L1PB1 LINE L1 5782 6149 -2 23 0 0 0 chr6 38925779 38925802 -150353752 + AT_rich Low_complexity Low_complexity 1 23 0 373 186 12 12 chr6 38925835 38925921 -150353633 + Charlie1 DNA MER1_type 2264 2349 -412 1014 141 0 0 chr6 38925924 38926073 -150353481 + FRAM SINE Alu 2 150 -26 280 221 66 49 chr6 38927104 38927226 -150352328 + Charlie1 DNA MER1_type 2285 2408 -353 1850 126 32 0 chr6 38927237 38927522 -150352032 + L1PA16 LINE L1 5849 6142 -24 1792 87 12 8 chr6 38927522 38927764 -150351790 - AluSp SINE Alu -1 312 70 268 30 0 0 chr6 38927764 38927797 -150351757 - AluSp SINE Alu -269 33 1 22 35 0 0 chr6 38927809 38927838 -150351716 + AT_rich Low_complexity Low_complexity 1 29 0 787 234 30 0 chr6 38928184 38928351 -150351203 - MLT1A1 LTR MaLR -187 178 7 1519 267 68 21 chr6 38928361 38928929 -150350625 - L1MDa LINE L1 -3313 3227 2615 3078 111 4 38 chr6 38928929 38929338 -150350216 + L1PA13 LINE L1 5684 6075 -88 6508 112 20 13 chr6 38929338 38930285 -150349269 + LTR13 LTR ERVK 1 954 0 3078 111 4 38 chr6 38930285 38930372 -150349182 + L1PA13 LINE L1 6075 6163 0 1519 267 68 21 chr6 38930372 38930549 -150349005 - L1MDa LINE L1 -3925 2615 2448 5429 221 47 16 chr6 38930554 38932123 -150347431 + L1MEc LINE L1 1515 4283 -1932 308 189 0 0 chr6 38932136 38932189 -150347365 - L1M1 LINE L1 -6265 1300 1248 2276 137 8 32 chr6 38932231 38932604 -150346950 - THE1B LTR MaLR 0 364 1 246 238 16 0 chr6 38937384 38937447 -150342107 + MIR SINE MIR 102 165 -97 568 87 33 0 chr6 38938331 38938423 -150341131 + L1PB1 LINE L1 6056 6150 -1 2286 107 0 0 chr6 38938440 38938739 -150340815 + AluSg SINE Alu 1 299 -11 1030 266 51 34 chr6 38938743 38939251 -150340303 - L1M4 LINE L1 -2045 4101 3585 1645 168 19 74 chr6 38939252 38939616 -150339938 - MER2 DNA MER2_type -1 344 1 337 314 25 29 chr6 38939627 38939869 -150339685 - L1M4 LINE L1 -2578 3568 3328 2960 40 0 0 chr6 38940059 38940411 -150339143 - L1PA4 LINE L1 -5 6150 5799 409 21 0 0 chr6 38940411 38940458 -150339096 + L1PA4 LINE L1 5757 5803 -352 266 0 29 0 chr6 38940649 38940683 -150338871 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 7728 27 6 0 chr6 38940684 38941953 -150337601 - L1PA3 LINE L1 -11 6144 4873 194 62 31 0 chr6 38942668 38942700 -150336854 + (CA)n Simple_repeat Simple_repeat 2 34 0 3561 155 80 1 chr6 38942713 38943390 -150336164 + Tigger3b DNA MER2_type 1 730 -501 8502 165 16 1 chr6 38943390 38944877 -150334677 + L1PA11 LINE L1 2605 4112 -2034 6722 133 28 0 chr6 38944903 38945283 -150334271 + L1PA11 LINE L1 4262 4630 -1544 2311 103 0 3 chr6 38945283 38945575 -150333979 - AluSg SINE Alu -19 291 1 6722 133 28 0 chr6 38945575 38947103 -150332451 + L1PA11 LINE L1 4630 6173 -1 1569 86 37 29 chr6 38947105 38947350 -150332204 + Tigger3b DNA MER2_type 724 970 -262 2553 186 31 99 chr6 38947374 38948052 -150331502 - MER21B LTR ERV1 -14 849 218 894 239 15 15 chr6 38948055 38948315 -150331239 + L1 LINE L1 4214 4473 -1673 * 41727 60 2 1 chr6 38948314 38954464 -150325090 + L1PA6 LINE L1 2 6154 0 203 133 44 0 chr6 38954483 38954528 -150325026 + (TA)n Simple_repeat Simple_repeat 1 47 0 5546 176 19 6 chr6 38954530 38955624 -150323930 + L1 LINE L1 2908 4016 -2130 253 358 30 15 chr6 38958471 38958605 -150320949 - MIR SINE MIR 0 262 127 2189 118 3 0 chr6 38958609 38958906 -150320648 + AluSq SINE Alu 1 298 -15 525 58 0 0 chr6 38958906 38958975 -150320579 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 447 275 8 17 chr6 38959008 38959128 -150320426 - MIR SINE MIR -133 129 11 219 158 18 35 chr6 38959786 38959843 -150319711 + T-rich Low_complexity Low_complexity 3 58 0 474 290 128 84 chr6 38960106 38960644 -150318910 - L1MEd LINE L1 -5350 769 208 432 320 46 47 chr6 38960796 38961421 -150318133 - MERVL LTR ERVL -1550 3935 3282 657 38 0 0 chr6 38961480 38961560 -150317994 + (CA)n Simple_repeat Simple_repeat 1 80 0 310 270 40 40 chr6 38962277 38962403 -150317151 + L1ME LINE L1 12 137 -5933 234 336 0 27 chr6 38962634 38962744 -150316810 + L1ME LINE L1 372 478 -5592 2185 170 44 32 chr6 38962972 38963230 -150316324 - MSTB LTR MaLR -2 424 157 2262 96 0 0 chr6 38963230 38963541 -150316013 + AluSg SINE Alu 1 311 0 2185 170 44 32 chr6 38963541 38963692 -150315862 - MSTB LTR MaLR -269 157 9 647 288 81 31 chr6 38963893 38964487 -150315067 + L1ME LINE L1 455 1078 -4900 2932 99 5 5 chr6 38964667 38965061 -150314493 - L1PA13 LINE L1 0 6163 5770 13444 182 9 24 chr6 38965061 38965801 -150313753 + L1PB2 LINE L1 2315 3064 -3087 2193 128 0 0 chr6 38965801 38966097 -150313457 + AluSx SINE Alu 3 298 -14 13444 182 9 24 chr6 38966097 38967886 -150311668 + L1PB2 LINE L1 3064 4763 -1388 2196 124 0 10 chr6 38967886 38968193 -150311361 + AluSq SINE Alu 1 304 -9 13444 182 9 24 chr6 38968193 38969562 -150309992 + L1PB2 LINE L1 4763 6151 0 201 39 0 0 chr6 38969576 38969602 -150309952 + (CAA)n Simple_repeat Simple_repeat 2 27 0 694 274 29 36 chr6 38969610 38969884 -150309670 + L1ME LINE L1 4353 4624 -1456 865 250 15 0 chr6 38969933 38970133 -150309421 - AluJo SINE Alu -92 220 18 1069 208 68 30 chr6 38970348 38970766 -150308788 - L1M3 LINE L1 -615 5565 5130 185 83 28 0 chr6 38971013 38971049 -150308505 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr6 38971614 38971635 -150307919 + AT_rich Low_complexity Low_complexity 1 21 0 805 219 0 12 chr6 38971950 38972110 -150307444 - MER90 LTR ERV1 0 575 418 1634 239 65 46 chr6 38972119 38972674 -150306880 - MER74A LTR ERVL -3 619 1 1211 258 164 0 chr6 38972694 38973047 -150306507 - MER90 LTR ERV1 -198 416 6 453 308 13 80 chr6 38973179 38973334 -150306220 + L1ME LINE L1 5389 5553 -502 2093 125 0 0 chr6 38973334 38973621 -150305933 - AluSx SINE Alu -25 287 1 453 308 13 80 chr6 38973621 38973711 -150305843 + L1ME LINE L1 5553 5611 -444 2269 104 0 3 chr6 38973711 38974010 -150305544 + AluSg SINE Alu 1 298 -12 453 308 13 80 chr6 38974010 38974075 -150305479 + L1ME LINE L1 5611 5679 -376 195 297 95 20 chr6 38974094 38974242 -150305312 - MIR SINE MIR -1 261 103 348 330 98 8 chr6 38974690 38975087 -150304467 + HAL1 LINE L1 983 1415 -1092 330 107 0 0 chr6 38976903 38976959 -150302595 + (TGGA)n Simple_repeat Simple_repeat 3 58 0 256 173 53 27 chr6 38976964 38977039 -150302515 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 209 195 0 0 chr6 38978503 38978544 -150301010 + (TG)n Simple_repeat Simple_repeat 2 42 0 3334 141 30 21 chr6 38979129 38979967 -150299587 - L1M1 LINE L1 -673 5630 4791 810 148 0 0 chr6 38979968 38980090 -150299464 - FLAM_C SINE Alu -21 122 1 207 100 0 0 chr6 38980290 38980320 -150299234 + (T)n Simple_repeat Simple_repeat 1 30 0 6812 125 39 7 chr6 38980414 38981511 -150298043 - Tigger3b DNA MER2_type -1 1230 99 295 268 55 28 chr6 38981897 38982051 -150297503 + L1MEc LINE L1 1371 1481 -4942 425 300 56 12 chr6 38982134 38982384 -150297170 + L1M4 LINE L1 3310 3570 -2576 1578 185 14 76 chr6 38982399 38982766 -150296788 + MER2 DNA MER2_type 2 345 0 1701 86 0 9 chr6 38982791 38983001 -150296553 + AluSq SINE Alu 1 208 -105 1434 204 14 84 chr6 38983108 38983465 -150296089 + MER41C-int LTR ERV1 2341 2672 -1519 853 138 26 3 chr6 38983465 38983617 -150295937 + MSTA LTR MaLR 1 170 -287 379 281 0 0 chr6 38983696 38983778 -150295776 + FLAM_A SINE Alu 16 97 -36 4820 212 56 35 chr6 38983820 38984142 -150295412 + MER41C-int LTR ERV1 2727 3041 -1150 4972 161 14 4 chr6 38984142 38984917 -150294637 - LTR39 LTR ERV1 0 783 1 4820 212 56 35 chr6 38984917 38985815 -150293739 + MER41C-int LTR ERV1 3041 3972 -219 230 241 36 48 chr6 38985842 38985925 -150293629 + MER21B LTR ERV1 384 465 -398 754 220 100 64 chr6 38985926 38986264 -150293290 + MSTD LTR MaLR 1 348 -17 2029 130 0 60 chr6 38986275 38986628 -150292926 + MER1B DNA MER1_type 1 332 -7 1521 180 48 73 chr6 38986683 38987195 -150292359 + MER4A LTR ERV1 1 521 -76 920 147 0 0 chr6 38987200 38987395 -150292159 + HERVK14 LTR ERVK 5235 5579 -366 * 1414 151 0 9 chr6 38987393 38987425 -150292129 + MER41C-int LTR ERV1 7541 7756 0 1488 70 0 5 chr6 38987425 38987611 -150291943 + HERVK14 LTR ERVK 5575 5759 -186 360 186 0 18 chr6 38987611 38987686 -150291868 + MER41C LTR ERV1 1 61 -493 404 60 0 0 chr6 38987686 38987736 -150291818 + HERVK14 LTR ERVK 5835 5884 -61 1265 139 25 10 chr6 38987761 38987962 -150291592 + LTR3b LTR ERVK 158 361 -139 9325 105 2 0 chr6 38987983 38989220 -150290334 + THE1A-int LTR MaLR 342 1580 0 2277 147 14 8 chr6 38989220 38989573 -150289981 + THE1A LTR MaLR 1 355 0 1872 268 76 13 chr6 38989574 38990185 -150289369 - L1M4 LINE L1 -2499 3647 2977 3119 144 28 18 chr6 38990185 38990685 -150288869 - LTR10B LTR ERV1 0 505 1 1872 268 76 13 chr6 38990685 38990833 -150288721 - L1M4 LINE L1 -3169 2977 2840 1744 222 17 0 chr6 38990843 38991195 -150288359 - MLT1A1 LTR MaLR -1 364 7 343 231 0 0 chr6 38991205 38991283 -150288271 - L1M4 LINE L1 -3313 2833 2756 252 78 0 62 chr6 38991352 38991416 -150288138 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 1451 195 0 14 chr6 38991417 38991694 -150287860 - AluJb SINE Alu -39 273 1 654 160 0 0 chr6 38992436 38992536 -150287018 - Tigger1 DNA MER2_type 0 2418 2319 10109 116 151 82 chr6 38992536 38993192 -150286362 - Tigger1 DNA MER2_type -236 2182 1573 2152 108 0 17 chr6 38993192 38993488 -150286066 + AluSq SINE Alu 1 291 -22 10109 116 151 82 chr6 38993488 38993499 -150286055 - Tigger1 DNA MER2_type -845 1573 1564 799 197 0 0 chr6 38993499 38993621 -150285933 + FLAM_C SINE Alu 2 123 -20 10109 116 151 82 chr6 38993621 38994872 -150284682 - Tigger1 DNA MER2_type -854 1564 1 203 315 63 27 chr6 38995095 38995206 -150284348 + L2 LINE L2 3165 3279 -34 2268 109 10 0 chr6 38995216 38995520 -150284034 - AluSx SINE Alu -5 307 1 191 283 47 57 chr6 38995642 38995748 -150283806 - L2 LINE L2 -50 3222 3118 183 327 18 0 chr6 38996841 38996896 -150282658 - L3 LINE CR1 -4 1573 1518 189 200 25 0 chr6 38996906 38996946 -150282608 - MIR SINE MIR -136 126 86 388 254 29 58 chr6 38996951 38996997 -150282557 + MER94 DNA DNA 1 47 -87 2308 115 0 0 chr6 38996997 38997302 -150282252 + AluSx SINE Alu 1 305 -7 388 254 29 58 chr6 38997302 38997393 -150282161 + MER94 DNA DNA 47 134 0 243 221 140 39 chr6 38999828 38999932 -150279622 - MER5A DNA MER1_type -10 168 59 1919 113 38 34 chr6 38999932 39000223 -150279331 - AluSx SINE Alu -20 292 1 232 204 74 0 chr6 39001959 39002013 -150277541 - L2 LINE L2 0 3313 3256 211 327 151 15 chr6 39002169 39002374 -150277180 - L2 LINE L2 -367 2947 2715 535 287 127 68 chr6 39003587 39003940 -150275614 - MLT1H1 LTR MaLR 0 547 152 2033 116 10 7 chr6 39003940 39004232 -150275322 + AluSx SINE Alu 1 293 -19 535 287 127 68 chr6 39004232 39004352 -150275202 - MLT1H1 LTR MaLR -395 152 41 1878 140 46 83 chr6 39004393 39004742 -150274812 + MER1B DNA MER1_type 1 336 -1 286 216 62 52 chr6 39005940 39006037 -150273517 - L1MD3 LINE L1 -6 7989 7892 4287 163 27 60 chr6 39006044 39007114 -150272440 - L1MB4 LINE L1 -1 6179 5147 2578 53 7 0 chr6 39007641 39007942 -150271612 - AluY SINE Alu -8 303 1 265 351 79 16 chr6 39008020 39008464 -150271090 - L1ME LINE L1 -383 5779 5308 1765 178 86 14 chr6 39008496 39008844 -150270710 + MLT1A2 LTR MaLR 1 373 -1 207 0 0 0 chr6 39008860 39008883 -150270671 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 278 236 0 0 chr6 39008904 39008976 -150270578 - L1MB4 LINE L1 -1112 5034 4963 223 179 191 36 chr6 39009595 39009679 -150269875 + MIR SINE MIR 32 128 -80 462 293 60 5 chr6 39009841 39010056 -150269498 - L1MC4a LINE L1 -1875 5933 5707 2349 92 13 0 chr6 39010119 39010424 -150269130 + AluSp SINE Alu 1 309 -4 385 169 26 0 chr6 39010436 39010513 -150269041 + L1ME3A LINE L1 5862 5940 -230 248 367 33 43 chr6 39010851 39011061 -150268493 - L1MC4a LINE L1 -2152 5656 5449 186 43 0 0 chr6 39011068 39011091 -150268463 + (TG)n Simple_repeat Simple_repeat 2 24 0 24 53 0 0 chr6 39012100 39012138 -150267416 + AT_rich Low_complexity Low_complexity 1 38 0 1686 167 14 11 chr6 39012156 39012432 -150267122 + AluJo SINE Alu 21 297 -15 955 176 15 60 chr6 39012532 39012731 -150266823 + MER20 DNA MER1_type 30 219 0 311 216 19 161 chr6 39012844 39013006 -150266548 + L2 LINE L2 3175 3313 0 271 395 6 17 chr6 39013100 39013277 -150266277 - MIR SINE MIR -79 183 9 2214 119 0 0 chr6 39013320 39013623 -150265931 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr6 39014363 39014384 -150265170 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 39015006 39015027 -150264527 + AT_rich Low_complexity Low_complexity 1 21 0 334 329 66 24 chr6 39016667 39016834 -150262720 + L2 LINE L2 2571 2744 -570 2071 196 16 13 chr6 39016839 39017198 -150262356 + L1 LINE L1 3888 4250 -1896 243 0 0 0 chr6 39017198 39017225 -150262329 + (CA)n Simple_repeat Simple_repeat 2 28 0 2071 196 16 13 chr6 39017225 39017315 -150262239 + L1 LINE L1 4250 4338 -1808 1943 188 46 73 chr6 39017770 39018248 -150261306 + MLT1D LTR MaLR 38 502 -3 1500 203 108 87 chr6 39018257 39018468 -150261086 + MLT1D LTR MaLR 3 208 -297 934 65 0 32 chr6 39018468 39018592 -150260962 - L1PA14 LINE L1 -4 6157 6038 1500 203 108 87 chr6 39018592 39018873 -150260681 + MLT1D LTR MaLR 208 505 0 1593 102 119 0 chr6 39020535 39020771 -150258783 - AluSc SINE Alu -15 294 31 207 0 0 0 chr6 39021392 39021415 -150258139 + (CA)n Simple_repeat Simple_repeat 1 23 0 291 396 77 35 chr6 39022153 39022529 -150257025 + L2 LINE L2 2572 2963 -351 21 0 0 0 chr6 39022546 39022567 -150256987 + AT_rich Low_complexity Low_complexity 1 21 0 273 366 20 13 chr6 39022679 39022832 -150256722 + L2 LINE L2 3159 3312 -1 21 36 0 0 chr6 39022907 39022935 -150256619 + AT_rich Low_complexity Low_complexity 1 28 0 219 211 19 19 chr6 39023085 39023137 -150256417 - MIR SINE MIR -74 134 83 406 259 37 0 chr6 39023137 39023218 -150256336 - AluJ/FLAM SINE Alu -223 89 6 381 93 0 0 chr6 39023340 39023394 -150256160 + (TG)n Simple_repeat Simple_repeat 1 54 0 2087 124 3 37 chr6 39024057 39024380 -150255174 + AluSx SINE Alu 1 312 0 6758 81 27 0 chr6 39024386 39025881 -150253673 + L1PA13 LINE L1 4630 6159 -4 355 269 57 51 chr6 39026160 39026335 -150253219 + MLT2E LTR ERVL 32 207 -421 2923 172 14 16 chr6 39026533 39027038 -150252516 - MLT1D LTR MaLR -1 504 1 2432 48 3 44 chr6 39027213 39027529 -150252025 - AluY SINE Alu -8 303 1 21 0 0 0 chr6 39028064 39028085 -150251469 + AT_rich Low_complexity Low_complexity 1 21 0 4666 191 21 22 chr6 39028263 39028992 -150250562 - L1MB7 LINE L1 -1 6183 5462 2587 152 114 46 chr6 39028992 39029511 -150250043 - LTR64 LTR ERVK -4 554 1 4666 191 21 22 chr6 39029511 39029934 -150249620 - L1MB7 LINE L1 -722 5462 5040 461 129 0 24 chr6 39029934 39030019 -150249535 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 1970 161 0 7 chr6 39030021 39030326 -150249228 - AluJb SINE Alu -9 303 1 377 194 19 2 chr6 39030326 39030425 -150249129 - L1MB7 LINE L1 -1096 5050 4943 * 716 224 50 14 chr6 39030421 39030640 -150248914 - L1MB7 LINE L1 -1780 4366 4140 447 259 17 157 chr6 39033651 39033789 -150245765 - MIR SINE MIR 0 262 106 2123 113 3 0 chr6 39033789 39034072 -150245482 + AluSq SINE Alu 1 284 -29 765 61 0 0 chr6 39034072 39034171 -150245383 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 447 259 17 157 chr6 39034171 39034324 -150245230 - MIR SINE MIR -154 108 11 219 158 18 35 chr6 39034982 39035039 -150244515 + T-rich Low_complexity Low_complexity 3 58 0 226 282 54 95 chr6 39035302 39035596 -150243958 - L1MEd LINE L1 -5350 769 488 442 316 51 52 chr6 39035992 39036617 -150242937 - MERVL LTR ERVL -1550 3935 3282 669 58 0 0 chr6 39036676 39036762 -150242792 + (CA)n Simple_repeat Simple_repeat 1 86 0 11688 203 32 11 chr6 39037476 39039952 -150239602 - L1PA15-16 LINE L1 -831 6018 3484 2067 138 3 3 chr6 39039952 39040249 -150239305 - AluSx SINE Alu -15 297 1 11688 203 32 11 chr6 39040249 39040383 -150239171 - L1PA15-16 LINE L1 -3365 3484 3354 1267 206 14 1 chr6 39040377 39040692 -150238862 - L1PA15-16 LINE L1 -3821 3028 2710 * 210 348 54 0 chr6 39041366 39041478 -150238076 - MIR SINE MIR -110 152 35 192 40 0 0 chr6 39043647 39043672 -150235882 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2128 102 14 0 chr6 39043674 39043958 -150235596 - AluSq SINE Alu -25 288 1 306 350 43 7 chr6 39044227 39044367 -150235187 - MER5A DNA MER1_type 0 189 45 205 306 83 58 chr6 39044264 39044385 -150235169 + MER5A DNA MER1_type 51 174 -15 * 251 192 51 51 chr6 39044471 39044549 -150235005 - MER5A DNA MER1_type -103 86 9 240 319 152 1 chr6 39046782 39046927 -150232627 - MIR SINE MIR -57 205 41 2242 91 14 0 chr6 39047601 39047897 -150231657 - AluSc SINE Alu -9 300 1 2089 128 10 3 chr6 39047901 39048198 -150231356 - AluSx SINE Alu -13 299 1 209 386 73 39 chr6 39048456 39048715 -150230839 - L2 LINE L2 -494 2820 2553 2263 93 17 0 chr6 39049397 39049697 -150229857 + AluSc SINE Alu 1 305 -4 1806 156 3 37 chr6 39049753 39050074 -150229480 + AluSx SINE Alu 1 310 -2 380 283 20 0 chr6 39050816 39050915 -150228639 + MIR SINE MIR 45 145 -63 2276 183 42 11 chr6 39051984 39052432 -150227122 + MLT1C LTR MaLR 6 467 0 2206 223 95 13 chr6 39052653 39053177 -150226377 + MLT1F1 LTR MaLR 1 567 0 201 282 26 39 chr6 39053510 39053588 -150225966 - L2 LINE L2 0 3272 3196 475 190 100 10 chr6 39053667 39053767 -150225787 - MER45A DNA AcHobo 0 178 70 647 218 52 15 chr6 39053888 39054140 -150225414 + LTR16C LTR ERVL 167 491 0 239 327 107 33 chr6 39054290 39054440 -150225114 - L2 LINE L2 -528 2786 2626 775 205 24 12 chr6 39055000 39055166 -150224388 - MER5B DNA MER1_type 0 178 11 780 235 101 0 chr6 39055269 39055448 -150224106 - MLT1J LTR MaLR -313 198 2 204 289 79 0 chr6 39056149 39056225 -150223329 - MIR SINE MIR -107 155 74 2284 126 95 18 chr6 39057230 39057618 -150221936 - MSTA LTR MaLR -7 421 4 859 146 0 44 chr6 39057642 39057779 -150221775 + FLAM_C SINE Alu 3 133 0 1039 216 69 10 chr6 39057801 39058111 -150221443 + MSTC-int LTR MaLR 1227 1580 0 1812 133 200 3 chr6 39058111 39058426 -150221128 + MSTC LTR MaLR 1 377 -51 381 235 108 13 chr6 39058427 39058666 -150220888 + L1MC4a LINE L1 5265 5550 -626 1225 150 275 0 chr6 39058676 39058956 -150220598 - LTR29 LTR ERV1 -262 360 4 1071 139 8 105 chr6 39058992 39059226 -150220328 + Charlie5 DNA MER1_type 2345 2551 -34 1984 128 7 20 chr6 39059226 39059523 -150220031 - AluSx SINE Alu -19 293 1 1071 139 8 105 chr6 39059523 39059555 -150219999 + Charlie5 DNA MER1_type 2551 2585 0 23 0 0 0 chr6 39059589 39059612 -150219942 + AT_rich Low_complexity Low_complexity 1 23 0 428 259 170 30 chr6 39059785 39060186 -150219368 + L1MC/D LINE L1 5304 5760 -2048 3866 175 28 49 chr6 39060340 39061089 -150218465 - MER44D DNA MER2_type 0 605 1 1420 211 83 52 chr6 39061153 39061506 -150218048 + MER84 LTR ERVI 14 387 -120 4655 101 79 8 chr6 39061506 39061786 -150217768 - LTR8 LTR ERV1 0 691 432 1774 104 7 62 chr6 39061786 39062075 -150217479 + AluSq SINE Alu 35 307 -6 4655 101 79 8 chr6 39062075 39062439 -150217115 - LTR8 LTR ERV1 -259 432 1 1420 211 83 52 chr6 39062439 39062564 -150216990 + MER84 LTR ERVI 387 507 0 513 299 85 14 chr6 39062564 39062918 -150216636 + L1MC4a LINE L1 5562 5940 -1868 29 47 0 0 chr6 39063109 39063152 -150216402 + AT_rich Low_complexity Low_complexity 1 43 0 1026 244 122 35 chr6 39063478 39063673 -150215881 + MER58B DNA MER1_type 3 236 -2184 2122 84 0 42 chr6 39063673 39063983 -150215571 - AluSx SINE Alu -15 297 1 1026 244 122 35 chr6 39063983 39064099 -150215455 + MER58B DNA MER1_type 236 341 0 285 343 25 65 chr6 39065143 39065420 -150214134 - L2 LINE L2 -2 3270 3005 303 310 50 93 chr6 39065761 39066222 -150213332 + L1M2 LINE L1 737 1177 -5672 1136 292 76 11 chr6 39066700 39067172 -150212382 - L2 LINE L2 -684 2630 2128 204 359 85 0 chr6 39067292 39067398 -150212156 - MER5A DNA MER1_type -63 126 12 241 335 81 19 chr6 39067420 39067581 -150211973 + MER5A DNA MER1_type 19 189 0 207 0 0 0 chr6 39067657 39067680 -150211874 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2815 69 3 0 chr6 39067965 39068312 -150211242 - THE1A LTR MaLR -5 350 3 553 289 50 100 chr6 39068319 39068780 -150210774 - LTR67 LTR ERVL -115 442 5 25 0 0 0 chr6 39069060 39069085 -150210469 + AT_rich Low_complexity Low_complexity 1 25 0 464 245 0 20 chr6 39069320 39069418 -150210136 - MER5C DNA MER1_type -228 96 1 235 244 67 44 chr6 39069494 39069584 -150209970 + L1MEd LINE L1 6 97 -6022 415 341 52 25 chr6 39069922 39070286 -150209268 + L1MEd LINE L1 464 837 -5282 2020 130 3 0 chr6 39070293 39070624 -150208930 + AluSp SINE Alu 1 332 0 2923 254 65 49 chr6 39070768 39071459 -150208095 + L1MEc LINE L1 36 752 -5644 2224 85 21 0 chr6 39071459 39071740 -150207814 + AluSp SINE Alu 1 287 -26 2923 254 65 49 chr6 39071740 39072127 -150207427 + L1MEc LINE L1 752 1131 -5265 324 180 0 15 chr6 39072127 39072200 -150207354 + Alu SINE Alu 1 47 -255 6942 176 28 6 chr6 39072200 39074152 -150205402 + L1MA9 LINE L1 3974 5969 -343 732 266 108 31 chr6 39074197 39074483 -150205071 + MER57A LTR ERV1 84 391 -12 216 0 0 0 chr6 39074490 39074514 -150205040 + (T)n Simple_repeat Simple_repeat 1 24 0 497 170 30 0 chr6 39074517 39074617 -150204937 + L1MA9 LINE L1 5974 6076 -236 311 106 0 0 chr6 39074617 39074664 -150204890 + MER4A LTR ERV1 1 47 -617 1307 97 29 14 chr6 39074692 39074899 -150204655 + L1MA9 LINE L1 6103 6312 0 1642 241 50 8 chr6 39074899 39075423 -150204131 + L1MB8 LINE L1 4406 4951 -1195 * 2675 154 32 56 chr6 39075396 39075897 -150203657 + L1MA9 LINE L1 5283 5771 -541 995 197 53 35 chr6 39075902 39076215 -150203339 - MSTD LTR MaLR 0 396 39 973 98 0 0 chr6 39076217 39076339 -150203215 + FLAM_C SINE Alu 1 122 -21 331 49 0 0 chr6 39076383 39076424 -150203130 - MSTD LTR MaLR -387 41 1 1568 165 72 18 chr6 39076437 39076828 -150202726 + L1MA9 LINE L1 5781 6290 -22 4069 203 35 26 chr6 39076862 39078119 -150201435 + L1MB8 LINE L1 4906 6172 -6 1635 310 60 32 chr6 39078126 39079518 -150200036 + HERV16 LTR ERVL 1079 2592 -2623 28 29 0 0 chr6 39079526 39079561 -150199993 + AT_rich Low_complexity Low_complexity 1 35 0 15830 138 30 34 chr6 39079564 39080178 -150199376 - L1MA1 LINE L1 0 7721 7106 1720 167 11 11 chr6 39080178 39080465 -150199089 - AluJb SINE Alu -19 293 7 15830 138 30 34 chr6 39080465 39080784 -150198770 - L1MA1 LINE L1 -615 7106 6787 1596 166 63 27 chr6 39080784 39081085 -150198469 - AluJb SINE Alu 0 312 1 15830 138 30 34 chr6 39081085 39081103 -150198451 - L1MA1 LINE L1 -934 6787 6770 2432 99 0 0 chr6 39081103 39081415 -150198139 - AluSx SINE Alu 0 312 1 15830 138 30 34 chr6 39081415 39081823 -150197731 - L1MA1 LINE L1 -951 6770 6362 2164 120 0 13 chr6 39081823 39082123 -150197431 - AluSc SINE Alu -13 296 1 15830 138 30 34 chr6 39082123 39083328 -150196226 - L1MA1 LINE L1 -1359 6362 5154 2200 107 10 0 chr6 39083328 39083617 -150195937 - AluSx SINE Alu -20 292 1 15830 138 30 34 chr6 39083617 39084957 -150194597 - L1MA1 LINE L1 -2567 5154 3811 2655 123 80 8 chr6 39084957 39085356 -150194198 - MSTA LTR MaLR 0 428 1 10328 154 22 9 chr6 39085356 39086985 -150192569 - MSTA-int LTR MaLR 0 1651 1 2365 173 36 10 chr6 39086985 39087402 -150192152 - MSTA LTR MaLR 0 428 1 15830 138 30 34 chr6 39087402 39088745 -150190809 - L1MA1 LINE L1 -3907 3814 2419 2241 105 9 16 chr6 39088751 39089066 -150190488 - AluSp SINE Alu 0 313 1 7142 158 39 3 chr6 39089066 39090753 -150188801 - L1P4 LINE L1 -436 5725 3971 249 213 0 0 chr6 39091845 39091892 -150187662 + L2 LINE L2 3138 3184 -88 180 263 70 88 chr6 39092117 39092231 -150187323 + L2 LINE L2 2943 3054 -218 540 231 0 0 chr6 39092539 39092647 -150186907 - MLT2D LTR ERVL -69 345 238 208 191 21 0 chr6 39095126 39095173 -150184381 + A-rich Low_complexity Low_complexity 2 49 0 233 254 95 56 chr6 39095173 39095299 -150184255 - MIR SINE MIR -56 206 76 615 285 142 11 chr6 39095358 39095625 -150183929 - L3 LINE CR1 -25 1552 1251 275 227 30 15 chr6 39095662 39095728 -150183826 - L1ME LINE L1 -6001 69 3 249 277 101 26 chr6 39095751 39095946 -150183608 - L2 LINE L2 0 3272 2979 706 237 88 40 chr6 39095979 39096207 -150183347 + MIR SINE MIR 14 252 -10 2223 119 0 0 chr6 39097334 39097629 -150181925 + AluSx SINE Alu 3 297 -15 582 301 85 19 chr6 39098142 39098401 -150181153 - MLT1I LTR MaLR -13 396 121 215 255 199 41 chr6 39098799 39098995 -150180559 - MIR SINE MIR -15 247 21 1452 219 7 4 chr6 39099154 39099433 -150180121 - AluJo SINE Alu -32 280 1 11906 182 49 12 chr6 39099465 39099853 -150179701 - L1PA15 LINE L1 0 6868 6496 2188 98 27 10 chr6 39099853 39100149 -150179405 - AluSg SINE Alu -7 303 3 11906 182 49 12 chr6 39100149 39103028 -150176526 - L1PA15 LINE L1 -372 6496 3482 2045 141 3 3 chr6 39103028 39103325 -150176229 - AluSx SINE Alu -15 297 1 11906 182 49 12 chr6 39103325 39103459 -150176095 - L1PA15 LINE L1 -3386 3482 3354 1267 206 14 1 chr6 39103453 39103768 -150175786 - L1PA15 LINE L1 -3821 3028 2710 * 1313 269 47 62 chr6 39104512 39105176 -150174378 - L1ME3 LINE L1 -212 5950 5277 3051 138 22 16 chr6 39105176 39105670 -150173884 - LOR1a LTR ERV1 0 497 1 1313 269 47 62 chr6 39105670 39105943 -150173611 - L1ME3 LINE L1 -885 5277 5027 1949 172 22 11 chr6 39105943 39106304 -150173250 + MLT1A1 LTR MaLR 1 365 0 1313 269 47 62 chr6 39106304 39106470 -150173084 - L1ME3 LINE L1 -1135 5027 4860 1506 241 77 65 chr6 39106484 39106647 -150172907 - L2 LINE L2 0 3313 3153 2245 97 0 7 chr6 39106647 39106937 -150172617 + AluSc SINE Alu 3 290 -19 1506 241 77 65 chr6 39106937 39107772 -150171782 - L2 LINE L2 -160 3153 2305 475 211 11 0 chr6 39108158 39108248 -150171306 + MER81 DNA DNA 24 114 0 2993 138 74 25 chr6 39108350 39108543 -150171011 - MER41C LTR ERV1 0 554 372 227 53 0 26 chr6 39108543 39108581 -150170973 + (TA)n Simple_repeat Simple_repeat 1 37 0 2993 138 74 25 chr6 39108581 39108765 -150170789 - MER41C LTR ERV1 -182 372 199 2073 128 14 0 chr6 39108765 39109055 -150170499 - AluSg SINE Alu -16 294 1 2993 138 74 25 chr6 39109055 39109204 -150170350 - MER41C LTR ERV1 -355 199 1 522 153 29 18 chr6 39109408 39109526 -150170028 - MLT1E2 LTR MaLR 0 626 431 517 260 121 55 chr6 39109574 39109847 -150169707 - LTR43 LTR ERV1 -125 477 187 1229 246 77 30 chr6 39110199 39110704 -150168850 - MLT1E2 LTR MaLR -69 497 1 405 260 39 0 chr6 39110715 39110819 -150168735 - L2 LINE L2 -19 3294 3187 272 122 20 0 chr6 39110875 39110924 -150168630 - L1MA10 LINE L1 -7 6327 6278 3238 120 0 2 chr6 39111161 39111619 -150167935 - L1PA15 LINE L1 0 6165 5709 432 227 0 27 chr6 39111619 39111631 -150167923 - L1MA9 LINE L1 -36 6276 6265 1659 231 12 10 chr6 39111631 39112030 -150167524 - L1ME1 LINE L1 -44 6122 5723 2154 201 26 44 chr6 39112201 39112659 -150166895 + MLT1D LTR MaLR 1 450 -55 35 24 0 0 chr6 39112659 39112701 -150166853 + AT_rich Low_complexity Low_complexity 1 42 0 333 157 57 0 chr6 39112701 39112771 -150166783 + MLT1D LTR MaLR 431 504 -1 544 268 125 51 chr6 39113745 39114081 -150165473 + MLT1J1 LTR MaLR 60 420 -26 2247 101 7 0 chr6 39114388 39114684 -150164870 - AluSq SINE Alu -15 298 1 418 301 107 31 chr6 39114688 39115373 -150164181 + L1MC4a LINE L1 4612 5348 -798 1603 278 44 19 chr6 39115427 39116018 -150163536 + L1MC4a LINE L1 5333 5938 -1870 2243 109 0 6 chr6 39116940 39117252 -150162302 - AluY SINE Alu -1 310 1 2249 80 0 11 chr6 39117255 39117541 -150162013 - AluSc SINE Alu -16 293 11 803 219 81 12 chr6 39117702 39117948 -150161606 - L1M4 LINE L1 -1436 4710 4448 2648 148 22 9 chr6 39117964 39118411 -150161143 - L1MA6 LINE L1 -287 6013 5561 298 264 149 0 chr6 39118594 39118715 -150160839 - MER112 DNA MER1_type -9 251 113 201 39 0 0 chr6 39118729 39118755 -150160799 + (TG)n Simple_repeat Simple_repeat 1 26 0 2511 53 3 0 chr6 39118899 39119201 -150160353 - AluY SINE Alu -8 303 1 2339 78 0 0 chr6 39119422 39119716 -150159838 + AluY SINE Alu 1 294 -17 4002 158 82 24 chr6 39120509 39121345 -150158209 - L1MA10 LINE L1 -1 6333 5449 2461 93 0 0 chr6 39121586 39121896 -150157658 + AluY SINE Alu 1 310 -1 717 125 71 0 chr6 39121981 39122093 -150157461 + FLAM_C SINE Alu 2 121 -22 26 30 0 0 chr6 39122093 39122126 -150157428 + AT_rich Low_complexity Low_complexity 1 33 0 616 223 0 15 chr6 39122178 39122308 -150157246 - FLAM_A SINE Alu -2 131 4 28 29 0 0 chr6 39122314 39122349 -150157205 + AT_rich Low_complexity Low_complexity 1 35 0 2431 102 0 3 chr6 39122647 39122960 -150156594 - AluSq SINE Alu -1 312 1 1204 136 0 0 chr6 39123938 39124114 -150155440 - AluSg/x SINE Alu -3 309 134 2347 87 0 3 chr6 39124531 39124831 -150154723 + AluY SINE Alu 1 299 -12 2278 115 0 6 chr6 39124836 39125186 -150154368 + AluSg SINE Alu 1 348 0 516 231 54 21 chr6 39126182 39126368 -150153186 - L1M4 LINE L1 -3768 2378 2187 2234 104 0 13 chr6 39126525 39126824 -150152730 - AluSg SINE Alu -15 295 1 586 202 0 25 chr6 39126829 39126991 -150152563 - FLAM_A SINE Alu 0 159 1 385 325 77 41 chr6 39127063 39127517 -150152037 - L1M4 LINE L1 -3157 2989 2514 2396 85 10 0 chr6 39127517 39127811 -150151743 - AluSg SINE Alu -13 297 1 385 325 77 41 chr6 39127811 39127864 -150151690 - L1M4 LINE L1 -3632 2514 2464 1399 208 19 7 chr6 39127952 39128221 -150151333 - AluJo SINE Alu -40 272 1 33 73 0 0 chr6 39128362 39128430 -150151124 + AT_rich Low_complexity Low_complexity 1 68 0 1178 224 40 77 chr6 39128430 39128603 -150150951 - L1MA9 LINE L1 -42 6270 6092 1951 129 33 10 chr6 39128603 39128905 -150150649 - AluJb SINE Alu -3 309 1 1178 224 40 77 chr6 39128905 39129132 -150150422 - L1MA9 LINE L1 -220 6092 5885 796 71 0 0 chr6 39129201 39129299 -150150255 + L1PA5 LINE L1 1 98 -6048 * 37938 38 28 2 chr6 39129287 39134687 -150144867 + L1PA5 LINE L1 611 6146 -8 1966 199 8 0 chr6 39134750 39135106 -150144448 + MLT1A1 LTR MaLR 7 365 0 1771 251 82 14 chr6 39135115 39135872 -150143682 + L1ME1 LINE L1 2840 3647 -2499 * 8295 105 4 6 chr6 39135871 39137012 -150142542 - THE1A-int LTR MaLR -441 1139 1 2408 99 8 33 chr6 39137012 39137376 -150142178 - THE1A LTR MaLR 0 355 1 1194 296 35 14 chr6 39137376 39137892 -150141662 + L1ME1 LINE L1 3644 4170 -1976 775 181 8 8 chr6 39137903 39138036 -150141518 + AluJo SINE Alu 3 135 -177 253 214 95 8 chr6 39138040 39138166 -150141388 + L1ME1 LINE L1 4156 4292 -1854 2170 274 19 36 chr6 39138202 39139005 -150140549 + L1ME1 LINE L1 5378 6166 0 245 352 28 21 chr6 39139018 39139163 -150140391 + L1M4c LINE L1 1650 1795 -4589 497 313 55 13 chr6 39139209 39139592 -150139962 + L1M4c LINE L1 2010 2408 -4155 23 33 0 0 chr6 39141066 39141096 -150138458 + GC_rich Low_complexity Low_complexity 1 30 0 180 125 0 0 chr6 39145113 39145145 -150134409 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 1432 299 89 28 chr6 39145295 39146411 -150133143 - L2 LINE L2 -4 3309 2128 222 289 70 18 chr6 39146672 39146786 -150132768 - MER5A DNA MER1_type -22 167 48 191 320 75 20 chr6 39146673 39146820 -150132734 + MER5A DNA MER1_type 35 189 0 * 207 0 0 0 chr6 39146896 39146919 -150132635 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2823 69 3 0 chr6 39147204 39147551 -150132003 - THE1A LTR MaLR -5 350 3 554 284 52 102 chr6 39147558 39148019 -150131535 - LTR67 LTR ERVL -115 442 5 25 0 0 0 chr6 39148299 39148324 -150131230 + AT_rich Low_complexity Low_complexity 1 25 0 436 245 0 20 chr6 39148559 39148657 -150130897 - MER5C DNA MER1_type -228 96 1 389 341 52 25 chr6 39149161 39149525 -150130029 + L1MEd LINE L1 464 837 -5282 204 125 0 0 chr6 39150459 39150491 -150129063 + (TCC)n Simple_repeat Simple_repeat 2 33 0 315 164 0 0 chr6 39150553 39150614 -150128940 + CT-rich Low_complexity Low_complexity 2 62 0 2450 83 3 0 chr6 39151898 39152198 -150127356 + AluY SINE Alu 1 301 -10 2626 30 7 3 chr6 39152198 39152500 -150127054 + AluY SINE Alu 1 303 -8 323 148 102 45 chr6 39152932 39153020 -150126534 + MER91C DNA MER1_type 35 127 -13 307 211 11 95 chr6 39154374 39154469 -150125085 - L2 LINE L2 -64 3249 3163 234 340 64 13 chr6 39154563 39154719 -150124835 - L2 LINE L2 -433 2881 2718 1192 282 49 27 chr6 39154735 39155186 -150124368 + MLT1J LTR MaLR 1 461 -50 403 311 37 21 chr6 39155217 39155407 -150124147 - L2 LINE L2 -620 2694 2502 435 255 35 87 chr6 39155586 39155817 -150123737 - L2 LINE L2 -1 3312 3094 184 292 42 0 chr6 39156096 39156168 -150123386 - L2 LINE L2 -1507 1807 1733 858 156 0 15 chr6 39156792 39156927 -150122627 - FLAM_C SINE Alu -5 138 6 3080 146 14 70 chr6 39157098 39157434 -150122120 - L1 LINE L1 -1189 4957 4604 2277 93 7 0 chr6 39157434 39157734 -150121820 - AluSg SINE Alu -8 302 1 3080 146 14 70 chr6 39157734 39158256 -150121298 - L1 LINE L1 -1542 4604 4224 1733 149 10 5 chr6 39158251 39158827 -150120727 + L1MA5 LINE L1 5553 6253 -47 * 1616 103 5 0 chr6 39158828 39159052 -150120502 + AluSx SINE Alu 1 225 -87 816 103 0 0 chr6 39159052 39159169 -150120385 + AluSg/x SINE Alu 185 301 -11 201 191 95 0 chr6 39159389 39159431 -150120123 - MER91A DNA MER1_type -27 169 124 413 294 119 17 chr6 39159636 39159813 -150119741 + MIR3 SINE MIR 1 195 -13 284 219 179 3 chr6 39160644 39160754 -150118800 - MIR SINE MIR -62 146 30 186 194 0 0 chr6 39161352 39161383 -150118171 + L2 LINE L2 3025 3055 -217 1818 157 56 15 chr6 39161834 39162158 -150117396 + MER2 DNA MER2_type 1 337 -8 209 285 236 8 chr6 39162439 39162562 -150116992 - MIR3 SINE MIR -29 179 29 395 198 58 12 chr6 39163528 39163614 -150115940 - MIR3 SINE MIR -11 197 108 212 272 235 0 chr6 39163634 39163715 -150115839 - MER91B DNA MER1_type 0 190 91 301 328 8 42 chr6 39163742 39163861 -150115693 - MER91B DNA MER1_type -75 115 1 2474 68 0 0 chr6 39163882 39164190 -150115364 - AluY SINE Alu -3 308 1 1408 185 3 48 chr6 39164256 39164569 -150114985 + AluJb SINE Alu 13 311 -1 425 300 50 6 chr6 39164961 39165121 -150114433 + MIR SINE MIR 67 233 -29 2135 105 0 16 chr6 39165818 39166123 -150113431 + AluSc SINE Alu 1 300 -9 189 321 38 0 chr6 39166126 39166179 -150113375 - MIR3 SINE MIR -40 168 114 718 260 96 29 chr6 39166582 39166972 -150112582 + L1MC5 LINE L1 7127 7498 -544 560 239 70 111 chr6 39167022 39167297 -150112257 + L1MC4 LINE L1 7492 7777 -265 1617 176 17 3 chr6 39167297 39167593 -150111961 - AluJb SINE Alu -7 305 6 560 239 70 111 chr6 39167593 39167655 -150111899 + L1MC4 LINE L1 7777 7812 -230 2151 81 3 3 chr6 39167655 39167970 -150111584 - AluSq SINE Alu 0 315 1 560 239 70 111 chr6 39167970 39168044 -150111510 + L1MC4 LINE L1 7812 7888 -154 435 150 75 0 chr6 39168044 39168124 -150111430 - AluS SINE Alu -7 305 220 243 283 0 0 chr6 39168238 39168291 -150111263 + L2 LINE L2 3261 3313 0 345 216 74 117 chr6 39168383 39168545 -150111009 - MIR3 SINE MIR -49 159 5 219 216 8 136 chr6 39169037 39169162 -150110392 - MIR3 SINE MIR -17 191 83 2194 94 3 3 chr6 39169214 39169521 -150110033 + AluSp SINE Alu 1 307 -6 1395 176 11 26 chr6 39169810 39170077 -150109477 + AluJo SINE Alu 1 263 -49 411 298 83 36 chr6 39170917 39171085 -150108469 + MER5B DNA MER1_type 2 177 -1 231 308 28 56 chr6 39171089 39171232 -150108322 - MIR3 SINE MIR -60 148 10 276 293 160 9 chr6 39171297 39171509 -150108045 - L2 LINE L2 -345 2969 2726 411 234 126 0 chr6 39171520 39171631 -150107923 - L2 LINE L2 0 3313 3189 558 294 81 71 chr6 39171927 39172444 -150107110 + L2 LINE L2 2808 3310 -3 201 74 0 0 chr6 39172761 39172788 -150106766 + (T)n Simple_repeat Simple_repeat 1 27 0 468 201 189 12 chr6 39172811 39172975 -150106579 - L1ME3A LINE L1 -295 5875 5683 389 297 34 2 chr6 39172984 39173150 -150106404 - L1ME3A LINE L1 -544 5620 5450 423 0 0 0 chr6 39173161 39173208 -150106346 + (TG)n Simple_repeat Simple_repeat 2 48 0 375 246 123 0 chr6 39173476 39173598 -150105956 + MER104 DNA Tc2 6 142 -38 799 196 7 7 chr6 39173612 39173760 -150105794 + MSTD LTR MaLR 1 148 -248 601 135 0 0 chr6 39173767 39173856 -150105698 + MSTD LTR MaLR 308 396 0 653 211 8 8 chr6 39173975 39174136 -150105418 + FLAM_A SINE Alu 1 161 0 2317 64 0 3 chr6 39174181 39174477 -150105077 + AluSc SINE Alu 1 295 -14 958 133 122 89 chr6 39174804 39175074 -150104480 - Tigger7 DNA MER2_type 0 2587 2309 888 201 7 0 chr6 39175080 39175234 -150104320 - Tigger7 DNA MER2_type -569 164 10 297 257 239 0 chr6 39175255 39175364 -150104190 + L2 LINE L2 3136 3270 -2 3067 124 154 109 chr6 39175955 39176170 -150103384 + L1MC3 LINE L1 6879 7083 -702 309 264 23 11 chr6 39176170 39176257 -150103297 + MLT1F1 LTR MaLR 35 122 -445 3067 124 154 109 chr6 39176257 39176816 -150102738 + L1MC3 LINE L1 7083 7778 -7 201 94 62 0 chr6 39177178 39177210 -150102344 + GA-rich Low_complexity Low_complexity 4 37 0 2491 46 0 0 chr6 39179163 39179465 -150100089 + AluSc SINE Alu 2 303 -6 264 310 110 33 chr6 39179546 39179960 -150099594 + L2 LINE L2 2713 3232 -81 914 44 0 11 chr6 39180045 39180225 -150099329 - L1PA4 LINE L1 -3 6152 5929 505 251 109 6 chr6 39180531 39180701 -150098853 + MIR SINE MIR 30 221 -41 1316 209 177 62 chr6 39180864 39181415 -150098139 + MER39 LTR ERV1 6 705 -2 239 0 32 0 chr6 39181500 39181531 -150098023 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1975 132 10 0 chr6 39182016 39182311 -150097243 - AluJo SINE Alu -14 298 1 304 285 197 18 chr6 39182312 39182652 -150096902 + LTR37B LTR ERV1 68 468 0 426 220 75 38 chr6 39182652 39182838 -150096716 - L1MC5 LINE L1 -415 7546 7354 2113 100 7 3 chr6 39183051 39183351 -150096203 - AluSx SINE Alu -11 301 1 293 313 82 15 chr6 39183360 39183494 -150096060 - L1MC4a LINE L1 -414 7394 7252 1102 216 259 5 chr6 39183502 39183872 -150095682 + LTR41 LTR ERVL 1 464 -309 405 191 44 175 chr6 39183917 39184093 -150095461 + L2 LINE L2 1560 1695 -1619 2012 84 12 59 chr6 39184093 39184415 -150095139 - AluSq SINE Alu -6 307 1 405 191 44 175 chr6 39184415 39184489 -150095065 + L2 LINE L2 1695 1777 -1537 2311 72 3 0 chr6 39184499 39184792 -150094762 + L1PA7 LINE L1 5846 6139 -15 448 286 66 121 chr6 39184807 39185078 -150094476 - L2 LINE L2 -825 2489 2205 858 145 0 0 chr6 39185078 39185202 -150094352 + AluJo SINE Alu 4 127 -175 448 286 66 121 chr6 39185202 39185258 -150094296 - L2 LINE L2 -1109 2205 2148 982 177 0 0 chr6 39185258 39185422 -150094132 + AluJo SINE Alu 137 300 -2 448 286 66 121 chr6 39185422 39185681 -150093873 - L2 LINE L2 -1166 2148 1934 527 314 171 14 chr6 39185690 39186129 -150093425 - L2 LINE L2 -1776 1538 1031 503 303 116 45 chr6 39186736 39187158 -150092396 - L1 LINE L1 -1126 5020 4569 186 43 0 0 chr6 39187501 39187524 -150092030 + (T)n Simple_repeat Simple_repeat 1 23 0 185 287 143 43 chr6 39188082 39188312 -150091242 - L2 LINE L2 -343 2971 2719 2158 64 3 3 chr6 39190480 39190786 -150088768 - AluY SINE Alu 0 306 1 1517 221 107 43 chr6 39192343 39192801 -150086753 + MLT1E LTR MaLR 1 536 -57 2120 113 0 7 chr6 39192801 39193111 -150086443 - AluSx SINE Alu -4 308 1 1517 221 107 43 chr6 39193111 39193173 -150086381 + MLT1E LTR MaLR 536 593 0 292 247 155 10 chr6 39193208 39193305 -150086249 + L2 LINE L2 3162 3272 0 646 315 81 8 chr6 39193471 39193706 -150085848 + MIR SINE MIR 10 261 -1 2786 44 0 6 chr6 39193744 39194084 -150085470 - L1PA5 LINE L1 -5 6149 5812 22 0 0 0 chr6 39194136 39194158 -150085396 + AT_rich Low_complexity Low_complexity 1 22 0 236 322 154 28 chr6 39194274 39194488 -150085066 - L2 LINE L2 -181 3091 2851 866 284 72 0 chr6 39195279 39195515 -150084039 + MIR SINE MIR 9 261 -1 22 80 0 0 chr6 39196086 39196136 -150083418 + AT_rich Low_complexity Low_complexity 1 50 0 247 313 84 99 chr6 39197297 39197629 -150081925 + L2 LINE L2 2943 3269 -3 501 269 31 31 chr6 39197655 39197785 -150081769 - MIR3 SINE MIR -77 131 2 207 225 59 34 chr6 39198689 39198794 -150080760 + MER5A DNA MER1_type 26 183 -6 228 186 29 14 chr6 39199611 39199681 -150079873 + (TA)n Simple_repeat Simple_repeat 1 71 0 591 161 201 20 chr6 39199965 39200114 -150079440 - MER5A DNA MER1_type 0 189 14 317 304 134 0 chr6 39200107 39200219 -150079335 + L2 LINE L2 3145 3271 -1 * 288 292 83 47 chr6 39200816 39200991 -150078563 - MIR SINE MIR -56 206 23 1182 156 0 50 chr6 39201549 39201787 -150077767 - AluJo SINE Alu 0 312 87 266 299 197 7 chr6 39201859 39202006 -150077548 - MIR3 SINE MIR -4 204 30 193 282 26 64 chr6 39202204 39202282 -150077272 - MIR SINE MIR -78 184 110 538 299 117 5 chr6 39202945 39203142 -150076412 - MIR SINE MIR -16 246 28 218 312 11 0 chr6 39204087 39204180 -150075374 + (CA)n Simple_repeat Simple_repeat 2 95 0 221 280 0 0 chr6 39204260 39204310 -150075244 - L2 LINE L2 0 3313 3264 399 300 64 0 chr6 39205654 39205794 -150073760 - MIR SINE MIR -41 221 73 1296 164 17 116 chr6 39205840 39206067 -150073487 - MER33 DNA MER1_type -2261 324 143 2296 60 23 3 chr6 39206067 39206369 -150073185 + AluY SINE Alu 1 308 -3 1296 164 17 116 chr6 39206369 39206494 -150073060 - MER33 DNA MER1_type -2442 143 7 357 288 76 33 chr6 39206704 39206888 -150072666 + MIR SINE MIR 20 211 -51 315 0 0 0 chr6 39206998 39207033 -150072521 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 225 65 0 0 chr6 39207596 39207627 -150071927 + (TC)n Simple_repeat Simple_repeat 1 31 0 460 323 103 36 chr6 39208609 39209104 -150070450 + L2 LINE L2 2450 2977 -337 7239 57 6 6 chr6 39209161 39210877 -150068677 - L1PA7 LINE L1 0 6154 4435 251 310 107 83 chr6 39210897 39211187 -150068367 + L2 LINE L2 2968 3264 -8 327 285 133 53 chr6 39211522 39211673 -150067881 - MIR3 SINE MIR -43 165 3 569 304 149 5 chr6 39212761 39212962 -150066592 + MIR SINE MIR 32 261 -1 348 274 140 43 chr6 39213994 39214158 -150065396 - MIR3 SINE MIR -14 194 15 944 236 41 24 chr6 39215118 39215364 -150064190 + MIR SINE MIR 2 251 -11 579 205 180 31 chr6 39215556 39215717 -150063837 - MER5A DNA MER1_type -1 188 4 2000 138 0 0 chr6 39217477 39217775 -150061779 + AluSx SINE Alu 6 303 -9 1617 126 119 0 chr6 39217777 39218054 -150061500 + AluSx SINE Alu 1 310 -2 267 31 0 0 chr6 39218319 39218351 -150061203 + (TAG)n Simple_repeat Simple_repeat 1 32 0 307 284 53 64 chr6 39218630 39218824 -150060730 - MIR SINE MIR -41 221 32 5444 101 2 23 chr6 39219842 39220636 -150058918 - L1PA11 LINE L1 0 6174 5397 11332 195 39 27 chr6 39220715 39222440 -150057114 - L1 LINE L1 -1439 5409 3705 2130 112 0 7 chr6 39222440 39222745 -150056809 - AluSq SINE Alu -10 303 1 11332 195 39 27 chr6 39222745 39224582 -150054972 - L1 LINE L1 -3143 3705 1778 2385 73 0 0 chr6 39224582 39224883 -150054671 - AluY SINE Alu -10 301 1 11332 195 39 27 chr6 39224883 39226052 -150053502 - L1 LINE L1 -5070 1778 624 230 362 26 9 chr6 39226160 39226276 -150053278 - L1M2 LINE L1 -6065 784 667 192 77 0 0 chr6 39226339 39226365 -150053189 + (CAG)n Simple_repeat Simple_repeat 3 28 0 188 268 0 0 chr6 39226395 39226436 -150053118 - L2 LINE L2 -36 3277 3237 1864 137 0 10 chr6 39226458 39226750 -150052804 + AluSx SINE Alu 15 303 -9 373 331 194 19 chr6 39226812 39227132 -150052422 + L2 LINE L2 2919 3294 -19 778 209 19 6 chr6 39227218 39227376 -150052178 + FRAM SINE Alu 1 160 -6 239 171 0 0 chr6 39227380 39227415 -150052139 + Alu SINE Alu 2 36 -97 2476 55 0 3 chr6 39227715 39228024 -150051530 + AluY SINE Alu 2 309 -2 464 234 39 23 chr6 39228463 39228591 -150050963 - L2 LINE L2 -5 3308 3179 204 125 0 0 chr6 39230209 39230241 -150049313 + (TCC)n Simple_repeat Simple_repeat 2 33 0 315 164 0 0 chr6 39230303 39230364 -150049190 + CT-rich Low_complexity Low_complexity 2 62 0 1067 62 0 0 chr6 39231648 39231776 -150047778 + AluY SINE Alu 1 128 -183 342 315 55 7 chr6 39232128 39232274 -150047280 + MIR SINE MIR 50 202 -60 1230 178 58 3 chr6 39233067 39233374 -150046180 - MER33 DNA MER1_type -22 302 1 205 200 0 0 chr6 39234159 39234199 -150045355 + A-rich Low_complexity Low_complexity 1 40 0 1980 100 11 4 chr6 39234403 39234682 -150044872 + AluSq SINE Alu 1 281 -32 258 32 0 0 chr6 39234684 39234715 -150044839 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2228 104 0 0 chr6 39235869 39236166 -150043388 + AluSq SINE Alu 9 305 -8 236 259 26 35 chr6 39236208 39236324 -150043230 + GA-rich Low_complexity Low_complexity 6 120 0 1025 137 35 25 chr6 39237051 39237177 -150042377 + Charlie5 DNA MER1_type 2 132 -2492 1859 131 65 0 chr6 39237177 39237468 -150042086 + AluSx SINE Alu 1 310 -2 1025 137 35 25 chr6 39237468 39237538 -150042016 + Charlie5 DNA MER1_type 132 200 -2424 940 134 51 106 chr6 39237536 39237811 -150041743 + Charlie5 DNA MER1_type 2352 2611 -1 * 1664 134 29 35 chr6 39238596 39238910 -150040644 - AluJb SINE Alu 0 312 1 375 270 74 20 chr6 39239592 39239740 -150039814 - MIR SINE MIR -71 191 36 650 209 23 0 chr6 39241558 39241687 -150037867 - MER94 DNA DNA -1 133 2 587 291 23 17 chr6 39242066 39242238 -150037316 - MER5A DNA MER1_type -16 173 1 210 320 19 0 chr6 39242242 39242319 -150037235 - MIR SINE MIR -109 99 36 2255 112 0 3 chr6 39242654 39242968 -150036586 - AluSq SINE Alu 0 313 1 965 259 63 32 chr6 39243390 39243768 -150035786 + L1MC4a LINE L1 5544 5933 -1875 1756 145 0 60 chr6 39244104 39244421 -150035133 + AluJb SINE Alu 13 310 -2 301 219 156 39 chr6 39244431 39244559 -150034995 + L1ME4a LINE L1 5410 5552 -569 861 240 133 13 chr6 39244656 39244889 -150034665 - MIR SINE MIR 0 262 2 2193 64 0 0 chr6 39244949 39245258 -150034296 + AluY SINE Alu 1 309 0 1252 156 33 0 chr6 39245265 39245477 -150034077 - MER20 DNA MER1_type 0 219 1 385 256 73 46 chr6 39245694 39245913 -150033641 + L1ME4a LINE L1 5894 6118 -3 311 278 46 76 chr6 39245918 39246181 -150033373 + L1ME LINE L1 5319 5573 -548 918 139 0 0 chr6 39246425 39246576 -150032978 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1998 113 3 3 chr6 39246578 39246861 -150032693 - AluSq SINE Alu -30 283 1 371 127 0 0 chr6 39247370 39247425 -150032129 + MLT2D LTR ERVL 1 55 -359 253 320 112 11 chr6 39247617 39247795 -150031759 + L3 LINE CR1 1084 1279 -298 1770 161 32 84 chr6 39247840 39247956 -150031598 + MLT1B LTR MaLR 7 127 -263 4533 108 35 51 chr6 39247956 39248323 -150031231 - MER4E LTR ERV1 0 766 394 2162 99 3 3 chr6 39248323 39248625 -150030929 - AluSx SINE Alu -9 303 2 4533 108 35 51 chr6 39248625 39249036 -150030518 - MER4E LTR ERV1 -372 394 1 1770 161 32 84 chr6 39249036 39249324 -150030230 + MLT1B LTR MaLR 127 390 0 296 271 8 81 chr6 39249479 39249621 -150029933 + L1MC4a LINE L1 5517 5651 -470 2478 172 82 64 chr6 39249621 39250232 -150029322 + LTR26E LTR ERV1 1 622 0 296 271 8 81 chr6 39250232 39250249 -150029305 + L1MC4a LINE L1 5651 5668 -453 325 285 95 88 chr6 39250288 39250572 -150028982 - L2 LINE L2 0 3313 3028 390 234 81 8 chr6 39250599 39250723 -150028831 + L1ME4a LINE L1 5986 6118 -3 755 140 185 0 chr6 39250902 39251059 -150028495 + MER53 DNA DNA 1 186 -3 2206 95 10 3 chr6 39251220 39251526 -150028028 + AluSx SINE Alu 1 308 -4 24 32 0 0 chr6 39251823 39251854 -150027700 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr6 39252361 39252398 -150027156 + AT_rich Low_complexity Low_complexity 1 37 0 205 314 0 0 chr6 39252425 39252476 -150027078 + L2 LINE L2 3190 3240 -32 278 229 115 32 chr6 39252541 39252698 -150026856 + L1MC4a LINE L1 5853 6022 -1786 1714 196 0 0 chr6 39253218 39253530 -150026024 - AluJb SINE Alu 0 312 1 180 222 0 0 chr6 39254726 39254762 -150024792 + MIR SINE MIR 111 146 -116 2571 191 96 36 chr6 39255623 39255693 -150023861 - MER69 DNA AcHobo -3 2523 2459 2045 100 0 37 chr6 39255693 39256014 -150023540 + AluSc SINE Alu 1 309 0 2571 191 96 36 chr6 39256014 39256760 -150022794 - MER69 DNA AcHobo -67 2459 1650 2199 219 151 11 chr6 39256790 39257353 -150022201 - MER69 DNA AcHobo -1835 691 50 1120 162 43 32 chr6 39257830 39258083 -150021471 - L1MA8 LINE L1 -133 6158 5903 194 292 42 14 chr6 39259294 39259366 -150020188 - L2 LINE L2 -39 3274 3201 365 351 0 15 chr6 39259453 39259584 -150019970 - MER91A DNA MER1_type -8 188 60 201 255 39 0 chr6 39259815 39259866 -150019688 - L2 LINE L2 -2 3270 3218 356 264 192 10 chr6 39260155 39260348 -150019206 - L1MC4a LINE L1 -1702 6106 5879 29 0 0 0 chr6 39260348 39260377 -150019177 + AT_rich Low_complexity Low_complexity 1 29 0 2157 74 60 0 chr6 39260491 39260774 -150018780 - AluY SINE Alu -11 300 1 1587 240 49 48 chr6 39260784 39261351 -150018203 - L1MC4a LINE L1 -1926 5882 5315 207 239 0 0 chr6 39261716 39261783 -150017771 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 314 362 26 0 chr6 39261843 39261959 -150017595 + MIR SINE MIR 11 129 -133 363 327 93 16 chr6 39261982 39262239 -150017315 - L2 LINE L2 -2361 953 677 871 244 95 95 chr6 39262252 39262512 -150017042 - MER21B LTR ERV1 -417 446 184 2327 90 0 3 chr6 39262512 39262824 -150016730 + AluSq SINE Alu 1 311 -2 871 244 95 95 chr6 39262824 39262912 -150016642 - MER21B LTR ERV1 -678 185 98 445 211 67 19 chr6 39263035 39263139 -150016415 + Tigger5 DNA MER2_type 2215 2323 0 296 150 167 0 chr6 39263139 39263199 -150016355 - MER21B LTR ERV1 -793 70 1 301 258 21 21 chr6 39263704 39263797 -150015757 + L3b LINE CR1 1290 1382 -201 237 329 38 0 chr6 39265200 39265279 -150014275 + MIR3 SINE MIR 116 197 -11 231 283 0 0 chr6 39265384 39265444 -150014110 + T-rich Low_complexity Low_complexity 5 64 0 216 0 0 0 chr6 39265651 39265675 -150013879 + (CA)n Simple_repeat Simple_repeat 2 25 0 296 313 101 46 chr6 39265689 39265906 -150013648 - L1MC4a LINE L1 -1901 5907 5679 567 295 82 62 chr6 39265934 39266290 -150013264 - L1MC4a LINE L1 -1161 4985 4623 432 322 96 17 chr6 39266763 39266916 -150012638 - L2 LINE L2 0 3313 3173 1988 107 0 0 chr6 39266916 39267188 -150012366 - AluSg1 SINE Alu 0 309 38 432 322 96 17 chr6 39267188 39267326 -150012228 - L2 LINE L2 -140 3173 2999 492 278 56 140 chr6 39267375 39267455 -150012099 - L2 LINE L2 -755 2559 2474 6829 57 7 0 chr6 39267455 39268301 -150011253 + L1PA7 LINE L1 5288 6139 -15 492 278 56 140 chr6 39268301 39268587 -150010967 - L2 LINE L2 -840 2474 2165 868 137 0 0 chr6 39268587 39268711 -150010843 + AluJo SINE Alu 4 127 -175 492 278 56 140 chr6 39268711 39268767 -150010787 - L2 LINE L2 -1149 2165 2106 982 177 0 0 chr6 39268767 39268931 -150010623 + AluJo SINE Alu 137 300 -2 492 278 56 140 chr6 39268931 39269190 -150010364 - L2 LINE L2 -1208 2106 1934 527 314 171 14 chr6 39269199 39269638 -150009916 - L2 LINE L2 -1776 1538 1031 485 288 190 40 chr6 39270054 39270533 -150009021 - L1 LINE L1 -876 5270 4720 529 266 91 35 chr6 39270634 39270833 -150008721 + MIR SINE MIR 5 214 -48 1739 140 6 56 chr6 39274270 39274592 -150004962 - AluJb SINE Alu -6 306 1 1865 260 64 43 chr6 39274748 39275749 -150003805 - L1MEd LINE L1 -4862 1257 318 30 0 0 0 chr6 39276014 39276044 -150003510 + AT_rich Low_complexity Low_complexity 1 30 0 434 222 69 21 chr6 39276046 39276190 -150003364 - L1M4 LINE L1 -917 5229 5079 2116 123 113 49 chr6 39276984 39277392 -150002162 + Tigger2a DNA MER2_type 1 434 0 225 282 153 0 chr6 39278299 39278384 -150001170 + L2 LINE L2 3132 3229 -43 1539 183 138 42 chr6 39284355 39284781 -149994773 + MLT1C LTR MaLR 1 467 0 200 339 0 35 chr6 39285355 39285470 -149994084 + C-rich Low_complexity Low_complexity 3 113 0 334 270 197 26 chr6 39288193 39288345 -149991209 - MIR3 SINE MIR -28 180 3 291 290 10 30 chr6 39288400 39288515 -149991039 + CT-rich Low_complexity Low_complexity 1 196 0 1459 190 9 8 chr6 39289117 39289407 -149990147 + MLT1D LTR MaLR 231 505 0 806 221 23 6 chr6 39289696 39289868 -149989686 + MER5B DNA MER1_type 1 175 -3 998 276 75 41 chr6 39289904 39290342 -149989212 + L2 LINE L2 2853 3305 -8 394 317 81 6 chr6 39291893 39292054 -149987500 - MIR SINE MIR -70 192 20 189 0 0 0 chr6 39292311 39292332 -149987222 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 43960 32 22 1 chr6 39292332 39298348 -149981206 - L1PA3 LINE L1 -10 6145 1 195 69 0 0 chr6 39298404 39298433 -149981121 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1946 129 4 0 chr6 39298433 39298712 -149980842 - AluSx SINE Alu -32 280 1 195 100 0 0 chr6 39298736 39298766 -149980788 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 927 270 159 31 chr6 39298766 39299281 -149980273 - L2 LINE L2 -13 3300 2712 225 0 0 0 chr6 39299283 39299308 -149980246 + (ATTG)n Simple_repeat Simple_repeat 1 25 0 656 197 0 41 chr6 39299308 39299430 -149980124 - FLAM_C SINE Alu -25 118 2 357 290 30 0 chr6 39299676 39299776 -149979778 - MIR3 SINE MIR 0 208 106 2307 85 7 0 chr6 39299888 39300195 -149979359 + AluSc SINE Alu 1 309 0 949 149 29 6 chr6 39300516 39300690 -149978864 + MER53 DNA DNA 9 186 -3 481 339 15 20 chr6 39300719 39300914 -149978640 - L2 LINE L2 -182 3090 2897 323 337 67 36 chr6 39301099 39301292 -149978262 - L2 LINE L2 -685 2629 2431 211 319 0 14 chr6 39301480 39301549 -149978005 + CT-rich Low_complexity Low_complexity 4 71 0 220 195 0 0 chr6 39301810 39301851 -149977703 - MIR3 SINE MIR -51 157 117 590 266 74 10 chr6 39302023 39302226 -149977328 - L2 LINE L2 0 3313 3098 407 341 7 0 chr6 39302432 39302567 -149976987 + L2 LINE L2 2897 3032 -240 496 302 81 9 chr6 39302567 39302857 -149976697 - L2 LINE L2 -209 3104 2797 534 281 182 6 chr6 39302861 39303196 -149976358 - L2 LINE L2 -682 2632 2239 26 0 0 0 chr6 39303225 39303251 -149976303 + AT_rich Low_complexity Low_complexity 1 26 0 2318 78 13 3 chr6 39304226 39304535 -149975019 + AluSp SINE Alu 2 313 0 499 163 0 0 chr6 39304730 39304810 -149974744 - MIR SINE MIR -110 152 73 317 301 168 9 chr6 39304899 39305012 -149974542 - L2 LINE L2 0 3313 3183 745 143 16 16 chr6 39305326 39305452 -149974102 + FLAM_C SINE Alu 1 126 -7 360 277 54 34 chr6 39305636 39305784 -149973770 + L1MC4a LINE L1 5780 5930 -1878 527 235 181 47 chr6 39306212 39306489 -149973065 - HAL1 LINE L1 -4 2503 2190 351 0 0 0 chr6 39306517 39306556 -149972998 + (CA)n Simple_repeat Simple_repeat 2 40 0 1865 139 3 23 chr6 39306663 39306973 -149972581 + AluSx SINE Alu 7 310 -2 2153 81 16 10 chr6 39307801 39308110 -149971444 + AluY SINE Alu 1 311 0 2262 236 29 11 chr6 39308210 39308769 -149970785 + MER90 LTR ERV1 2 570 -5 437 297 47 20 chr6 39308893 39309041 -149970513 - L2 LINE L2 0 3313 3162 357 261 53 106 chr6 39309433 39309621 -149969933 + L1MC4 LINE L1 7864 8041 -1 393 207 46 0 chr6 39310381 39310468 -149969086 + MLT1C LTR MaLR 2 92 -375 1773 155 0 69 chr6 39310470 39310805 -149968749 + AluJb SINE Alu 1 312 0 545 159 0 9 chr6 39310805 39310912 -149968642 + GA-rich Low_complexity Low_complexity 2 107 0 1442 198 120 11 chr6 39310924 39311273 -149968281 + MLT1C LTR MaLR 81 467 0 231 170 0 0 chr6 39311283 39311330 -149968224 + (TG)n Simple_repeat Simple_repeat 2 48 0 237 261 120 22 chr6 39312021 39312113 -149967441 - L2 LINE L2 -187 3085 2985 382 194 101 1 chr6 39313238 39313334 -149966220 - L1MC/D LINE L1 -412 5758 5674 1469 185 69 29 chr6 39313340 39313686 -149965868 + LTR47B LTR ERVL 84 443 0 708 269 60 60 chr6 39314930 39315031 -149964523 + L1MC5 LINE L1 7352 7452 -509 3138 179 16 11 chr6 39315031 39315583 -149963971 + MER41D LTR ERV1 3 557 0 708 269 60 60 chr6 39315583 39315913 -149963641 + L1MC5 LINE L1 7451 7783 -178 2022 194 16 34 chr6 39315915 39316471 -149963083 + L1MC3 LINE L1 7000 7692 -93 235 143 125 0 chr6 39316473 39316529 -149963025 + L1MC2 LINE L1 6281 6343 -1 343 248 88 9 chr6 39316536 39316649 -149962905 + L1MC5 LINE L1 7790 7911 -50 1603 155 97 7 chr6 39316667 39316945 -149962609 + AluJo SINE Alu 1 303 -9 2971 170 42 5 chr6 39317016 39317593 -149961961 - L1MB3 LINE L1 0 6183 5586 234 309 109 40 chr6 39319101 39319276 -149960278 - MLT1K LTR MaLR -250 338 152 945 109 32 19 chr6 39319338 39319494 -149960060 - L1MA5 LINE L1 0 6300 6143 7688 185 4 7 chr6 39319494 39321257 -149958297 + L1PB1 LINE L1 3770 5527 -624 1361 58 0 2 chr6 39321257 39321517 -149958037 - AluY SINE Alu 0 311 2 3633 94 54 15 chr6 39321518 39322051 -149957503 + L1PB1 LINE L1 5514 6067 -84 7924 165 19 110 chr6 39322052 39322528 -149957026 - L1MB3 LINE L1 -816 5330 4812 2247 85 41 0 chr6 39322528 39322821 -149956733 + AluSg SINE Alu 1 305 -5 7924 165 19 110 chr6 39322821 39324463 -149955091 - L1MB3 LINE L1 -1334 4812 3405 2634 181 93 58 chr6 39324464 39324979 -149954575 - MER65-int LTR ERV1 -757 1029 1090 2432 77 0 0 chr6 39324979 39325277 -149954277 + AluY SINE Alu 1 298 -13 2634 181 93 58 chr6 39325277 39325562 -149953992 - MER65-int LTR ERV1 -695 1091 817 2323 74 0 14 chr6 39325999 39326296 -149953258 + AluY SINE Alu 1 293 -18 21 36 0 0 chr6 39327146 39327174 -149952380 + AT_rich Low_complexity Low_complexity 1 28 0 309 259 54 45 chr6 39327724 39327836 -149951718 + L2 LINE L2 1700 1812 -1502 1935 271 143 56 chr6 39327838 39328364 -149951190 - HAL1 LINE L1 -10 2497 2018 1120 208 124 69 chr6 39328364 39328710 -149950844 + MLT1A1 LTR MaLR 1 365 0 1935 271 143 56 chr6 39328710 39329587 -149949967 - HAL1 LINE L1 -489 2018 972 226 356 46 26 chr6 39329648 39329842 -149949712 + L2 LINE L2 3116 3313 0 230 326 35 28 chr6 39330066 39330207 -149949347 + MIR SINE MIR 101 242 -20 261 347 24 14 chr6 39330221 39330434 -149949120 - L1ME LINE L1 -354 5767 5553 2012 64 4 16 chr6 39330442 39330722 -149948832 - AluY SINE Alu 0 312 36 2103 261 83 4 chr6 39330973 39331536 -149948018 + MER90 LTR ERV1 5 612 -2 1756 171 24 0 chr6 39331865 39332152 -149947402 + AluSx SINE Alu 1 294 -18 1134 168 35 15 chr6 39332587 39332789 -149946765 - MER3 DNA MER1_type -2 207 2 1778 191 57 17 chr6 39332791 39333142 -149946412 + MLT1A1 LTR MaLR 1 365 0 1423 184 0 106 chr6 39333205 39333536 -149946018 + AluJo SINE Alu 1 296 -16 4122 218 100 41 chr6 39333858 39334209 -149945345 + Charlie1a DNA MER1_type 7 336 -2425 2013 141 3 13 chr6 39334209 39334514 -149945040 + AluSx SINE Alu 1 302 -10 4122 218 100 41 chr6 39334514 39335106 -149944448 + Charlie1a DNA MER1_type 336 892 -1869 1383 197 48 7 chr6 39335106 39335401 -149944153 + AluJo SINE Alu 1 307 -5 4122 218 100 41 chr6 39335401 39335824 -149943730 + Charlie1a DNA MER1_type 892 1455 0 274 233 181 35 chr6 39336595 39336711 -149942843 + L3 LINE CR1 956 1088 -489 * 2317 276 111 29 chr6 39336678 39337811 -149941743 - L2 LINE L2 -2 3311 2108 305 271 308 0 chr6 39337884 39338017 -149941537 - MER5A DNA MER1_type -7 182 9 318 299 132 7 chr6 39338046 39338190 -149941364 - MER5B DNA MER1_type -16 162 1 209 33 33 0 chr6 39338277 39338307 -149941247 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 501 326 47 63 chr6 39338329 39338691 -149940863 - LTR67 LTR ERVL -98 459 104 2880 146 124 10 chr6 39339213 39339712 -149939842 - MER21A LTR ERV1 0 931 376 1281 135 90 12 chr6 39339717 39339962 -149939592 - MER21A LTR ERV1 -667 264 1 2132 178 0 29 chr6 39339971 39340347 -149939207 - MLT1A1 LTR MaLR 0 365 1 6040 198 49 63 chr6 39340424 39340791 -149938763 + L1MB7 LINE L1 3576 3947 -2237 613 238 0 24 chr6 39340791 39340917 -149938637 + FLAM_A SINE Alu 4 126 -7 6040 198 49 63 chr6 39340917 39341000 -149938554 + L1MB7 LINE L1 3947 4030 -2154 2122 138 126 31 chr6 39341000 39341390 -149938164 - MSTA LTR MaLR -1 427 1 6040 198 49 63 chr6 39341390 39342017 -149937537 + L1MB7 LINE L1 4030 4665 -1519 1869 164 6 13 chr6 39342017 39342329 -149937225 + AluJo SINE Alu 1 310 -2 6040 198 49 63 chr6 39342329 39342579 -149936975 + L1MB7 LINE L1 4665 4917 -1267 1829 218 21 46 chr6 39342579 39343056 -149936498 + MLT1C LTR MaLR 3 467 0 6040 198 49 63 chr6 39343056 39343173 -149936381 + L1MB7 LINE L1 4917 5034 -1150 2332 85 0 0 chr6 39343173 39343455 -149936099 + AluSg SINE Alu 1 282 -28 201 39 0 0 chr6 39343455 39343481 -149936073 + (TA)n Simple_repeat Simple_repeat 2 27 0 6040 198 49 63 chr6 39343481 39343615 -149935939 + L1MB7 LINE L1 5033 5167 -1017 374 125 111 0 chr6 39343615 39343687 -149935867 + L1MA7 LINE L1 6211 6290 -1 6040 198 49 63 chr6 39343687 39343877 -149935677 + L1MB7 LINE L1 5167 5358 -826 2153 134 0 0 chr6 39343877 39344175 -149935379 + AluSx SINE Alu 3 300 -12 6040 198 49 63 chr6 39344175 39344293 -149935261 + L1MB7 LINE L1 5358 5476 -708 2147 104 0 4 chr6 39344293 39344573 -149934981 + AluSg SINE Alu 1 279 -31 294 95 0 0 chr6 39344576 39344618 -149934936 + (CA)n Simple_repeat Simple_repeat 2 43 0 6040 198 49 63 chr6 39344618 39345263 -149934291 + L1MB7 LINE L1 5478 6102 -82 6002 138 54 7 chr6 39345346 39345628 -149933926 - L1MA4A LINE L1 -6 6297 6030 357 43 0 0 chr6 39345628 39345675 -149933879 + (CA)n Simple_repeat Simple_repeat 1 47 0 6002 138 54 7 chr6 39345675 39346870 -149932684 - L1MA4A LINE L1 -273 6030 4750 1055 152 76 5 chr6 39346932 39347116 -149932438 - AluJb SINE Alu -16 296 100 2117 181 15 2 chr6 39347117 39347521 -149932033 + L1 LINE L1 3439 3847 -2299 230 196 0 0 chr6 39348081 39348127 -149931427 - L2 LINE L2 -5 3308 3263 747 201 151 102 chr6 39348314 39348737 -149930817 + L1ME3A LINE L1 5727 6170 0 801 199 64 6 chr6 39349504 39349675 -149929879 - MER3 DNA MER1_type 0 209 29 221 260 0 65 chr6 39350436 39350513 -149929041 + GA-rich Low_complexity Low_complexity 1 72 0 362 264 7 76 chr6 39350806 39350950 -149928604 - L1ME1 LINE L1 -6 6160 6027 961 139 52 17 chr6 39351241 39351413 -149928141 + FRAM SINE Alu 1 175 -1 7981 35 0 1 chr6 39351887 39353573 -149925981 + L1PA3 LINE L1 4504 6155 0 510 221 0 0 chr6 39354391 39354563 -149924991 + (TG)n Simple_repeat Simple_repeat 1 172 0 2353 91 0 0 chr6 39355465 39355772 -149923782 - AluSg SINE Alu -3 307 1 746 296 123 37 chr6 39355875 39356583 -149922971 + L2 LINE L2 2513 3295 -18 242 296 151 30 chr6 39356592 39356650 -149922904 + L1ME LINE L1 5536 5586 -535 1855 122 0 0 chr6 39356650 39356904 -149922650 + AluSx SINE Alu 47 300 -12 242 296 151 30 chr6 39356904 39357183 -149922371 + L1ME LINE L1 5586 5914 -207 1340 205 40 44 chr6 39357499 39357796 -149921758 - AluJo SINE Alu -6 296 1 1518 179 14 10 chr6 39358515 39358805 -149920749 - AluJb SINE Alu -19 293 3 400 279 30 131 chr6 39359088 39359233 -149920321 - L2 LINE L2 0 3272 3179 360 43 0 0 chr6 39359233 39359279 -149920275 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 400 279 30 131 chr6 39359279 39359470 -149920084 - L2 LINE L2 -93 3179 2970 717 150 13 23 chr6 39359632 39359788 -149919766 - MER5A DNA MER1_type -39 150 3 259 330 23 39 chr6 39360755 39361013 -149918541 - L1MC4a LINE L1 -1785 6023 5770 341 299 99 24 chr6 39361137 39361431 -149918123 + L1ME3 LINE L1 5625 5940 -222 1631 188 7 7 chr6 39361432 39361724 -149917830 + AluJb SINE Alu 1 292 -20 1824 261 97 10 chr6 39362406 39363106 -149916448 + L1ME2 LINE L1 5402 6162 -2 963 207 18 0 chr6 39363152 39363369 -149916185 + L1MA4A LINE L1 3742 3962 -2184 5408 150 26 27 chr6 39363381 39364825 -149914729 + L1MA4A LINE L1 4861 6298 -5 284 73 0 109 chr6 39365250 39365305 -149914249 + MLT1B LTR MaLR 1 49 -341 * 941 161 33 0 chr6 39365302 39365482 -149914072 + MLT1B LTR MaLR 205 390 0 287 305 49 44 chr6 39365903 39366083 -149913471 - MIR SINE MIR -63 199 21 180 195 98 0 chr6 39368621 39368662 -149910892 - MIR SINE MIR -98 164 120 184 367 0 51 chr6 39368730 39368809 -149910745 - MIR SINE MIR -165 97 23 574 163 98 0 chr6 39368839 39368962 -149910592 + Tigger1 DNA MER2_type 2042 2176 -242 2818 230 72 104 chr6 39368962 39369330 -149910224 + L2 LINE L2 295 673 -2641 1943 218 101 27 chr6 39369330 39369913 -149909641 + MLT1E2 LTR MaLR 1 626 0 2818 230 72 104 chr6 39369913 39370951 -149908603 + L2 LINE L2 673 1656 -1658 884 306 72 27 chr6 39370951 39371395 -149908159 + LTR16B LTR ERVL 1 464 0 2720 319 49 41 chr6 39372085 39373671 -149905883 + ERVL LTR ERVL 858 2430 -2855 2030 129 7 0 chr6 39373671 39373950 -149905604 + AluSq SINE Alu 1 281 -32 294 29 0 0 chr6 39373954 39373989 -149905565 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 2720 319 49 41 chr6 39373989 39374785 -149904769 + ERVL LTR ERVL 2432 3385 -1900 786 370 38 14 chr6 39374977 39375769 -149903785 + ERVL LTR ERVL 4103 4914 -571 436 329 18 0 chr6 39376083 39376247 -149903307 + LTR16B LTR ERVL 62 228 -236 886 208 15 15 chr6 39376257 39376454 -149903100 + MLT1F1 LTR MaLR 371 567 0 1665 179 7 10 chr6 39376518 39376815 -149902739 - AluJb SINE Alu -16 296 1 1745 222 77 71 chr6 39376988 39377511 -149902043 + MLT1E3 LTR MaLR 14 543 -81 1341 226 9 28 chr6 39377511 39377829 -149901725 + AluJo SINE Alu 1 312 0 1745 222 77 71 chr6 39377829 39377912 -149901642 + MLT1E3 LTR MaLR 543 624 0 217 204 0 0 chr6 39378047 39378096 -149901458 - L2 LINE L2 0 3313 3265 282 268 56 0 chr6 39378145 39378216 -149901338 - L2 LINE L2 -554 2760 2686 180 152 0 0 chr6 39379017 39379050 -149900504 + A-rich Low_complexity Low_complexity 1 33 0 1141 297 98 26 chr6 39383707 39383825 -149895729 - L2 LINE L2 -2 3311 3203 942 170 55 77 chr6 39383825 39384060 -149895494 - MER30 DNA MER1_type 0 230 1 1141 297 98 26 chr6 39384060 39384840 -149894714 - L2 LINE L2 -110 3203 2352 410 247 42 47 chr6 39385123 39385405 -149894149 + L1MEc LINE L1 2145 2386 -3829 891 203 38 0 chr6 39385488 39385646 -149893908 - FRAM SINE Alu -14 162 1 506 182 170 42 chr6 39386155 39386320 -149893234 + MER20 DNA MER1_type 32 217 -2 311 285 169 15 chr6 39386321 39386451 -149893103 - MIR SINE MIR -91 171 22 21 0 0 0 chr6 39387773 39387794 -149891760 + AT_rich Low_complexity Low_complexity 1 21 0 1442 231 46 27 chr6 39387968 39388445 -149891109 + L1MB4 LINE L1 4904 5389 -757 2265 117 0 7 chr6 39388456 39388755 -149890799 + AluSc SINE Alu 1 297 -12 3476 164 44 9 chr6 39388799 39389464 -149890090 + L1MB4 LINE L1 5493 6180 0 1074 169 4 24 chr6 39389608 39389845 -149889709 - MER4A LTR ERV1 -113 551 261 578 116 0 21 chr6 39389849 39389944 -149889610 - MER4A LTR ERV1 -571 93 1 376 243 40 0 chr6 39389963 39390111 -149889443 + L1MC5 LINE L1 7299 7452 -509 429 359 46 27 chr6 39390210 39390892 -149888662 + HERV16 LTR ERVL 2726 3478 -1925 431 348 27 27 chr6 39391059 39391603 -149887951 + HERV16 LTR ERVL 3619 4228 -1181 280 229 14 0 chr6 39392362 39392432 -149887122 + MER4B-int LTR ERV1 6000 6070 -688 1857 189 58 23 chr6 39392438 39392866 -149886688 + LTR47B LTR ERVL 1 443 0 634 285 53 53 chr6 39394110 39394211 -149885343 + L1MC5 LINE L1 7352 7452 -509 2973 179 16 11 chr6 39394211 39394763 -149884791 + MER41D LTR ERV1 3 557 0 634 285 53 53 chr6 39394763 39395093 -149884461 + L1MC5 LINE L1 7451 7783 -178 551 214 41 14 chr6 39395095 39395240 -149884314 + L1MC3 LINE L1 7000 7148 -637 207 289 67 22 chr6 39400437 39400527 -149879027 + L3 LINE CR1 934 1027 -550 201 313 70 17 chr6 39400539 39400654 -149878900 - L2 LINE L2 -2 3311 3191 382 128 0 1 chr6 39400657 39400741 -149878813 - MER30 DNA MER1_type 0 230 140 1588 323 66 46 chr6 39401151 39402636 -149876918 + HERV16 LTR ERVL 1951 3088 -1908 744 313 21 18 chr6 39402765 39403049 -149876505 + HERV16 LTR ERVL 4108 4392 -1262 254 85 0 21 chr6 39403418 39403430 -149876124 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 254 85 0 21 chr6 39403430 39403477 -149876077 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 705 323 36 16 chr6 39403904 39404288 -149875266 + LTR16B LTR ERVL 69 460 -4 352 218 0 0 chr6 39404404 39404482 -149875072 + MLT1F1 LTR MaLR 488 565 -2 201 281 18 0 chr6 39404543 39404600 -149874954 + L2 LINE L2 1780 1837 -1477 376 311 140 11 chr6 39404909 39405260 -149874294 + L1ME3A LINE L1 5554 5949 -221 1907 146 18 0 chr6 39405447 39405763 -149873791 - AluSq SINE Alu 0 321 1 40330 26 17 1 chr6 39406326 39412357 -149867197 + L1HS LINE L1 1 6155 0 432 0 0 0 chr6 39412357 39412405 -149867149 + (A)n Simple_repeat Simple_repeat 1 48 0 180 0 0 0 chr6 39412524 39412544 -149867010 + (A)n Simple_repeat Simple_repeat 1 20 0 643 204 0 30 chr6 39413091 39413223 -149866331 + AluJb SINE Alu 159 286 -26 318 26 0 0 chr6 39413223 39413262 -149866292 + (CTAA)n Simple_repeat Simple_repeat 2 40 0 1701 224 40 86 chr6 39413372 39413532 -149866022 + MLT1F1 LTR MaLR 15 181 -386 2065 126 3 0 chr6 39413532 39413834 -149865720 + AluSg SINE Alu 3 305 -5 1701 224 40 86 chr6 39413834 39414253 -149865301 + MLT1F1 LTR MaLR 181 567 0 2229 234 68 19 chr6 39414453 39415046 -149864508 + MLT1E3 LTR MaLR 1 622 -2 464 264 8 8 chr6 39415202 39415327 -149864227 - L2 LINE L2 -1 3312 3188 398 277 162 0 chr6 39415304 39415452 -149864102 - L2 LINE L2 -502 2812 2641 * 1394 170 4 29 chr6 39415828 39416161 -149863393 + AluJb SINE Alu 12 337 0 2268 167 41 7 chr6 39418988 39419402 -149860152 + MSTA LTR MaLR 1 428 0 2575 190 13 0 chr6 39419402 39419875 -149859679 + MSTA-int LTR MaLR 1 479 -1172 2268 239 37 21 chr6 39419884 39420449 -149859105 + MSTA-int LTR MaLR 1078 1651 0 1841 208 64 7 chr6 39420449 39420858 -149858696 + MSTB1 LTR MaLR 1 432 0 554 237 111 7 chr6 39420877 39421012 -149858542 - MER21B LTR ERV1 -694 169 21 4392 254 45 30 chr6 39421112 39422368 -149857186 - MER21B-int LTR ERV1 -50 4141 2868 536 264 14 10 chr6 39422373 39422581 -149856973 + L1M4 LINE L1 3250 3458 -2688 543 314 26 31 chr6 39422581 39422807 -149856747 + Harlequin LTR ERV1 785 1009 -6776 6891 53 10 39 chr6 39423028 39424341 -149855213 + L1PA7 LINE L1 4861 6146 -8 1052 317 32 25 chr6 39424353 39424981 -149854573 + Harlequin LTR ERV1 1401 2032 -5753 392 157 14 0 chr6 39424999 39425069 -149854485 + LTR18B LTR ERVL 332 402 -212 373 188 35 24 chr6 39425115 39425200 -149854354 + LTR18B LTR ERVL 268 353 -261 441 260 274 5 chr6 39425742 39425965 -149853589 - MER102b DNA MER1_type -3 338 56 655 312 71 63 chr6 39426616 39427206 -149852348 + Harlequin LTR ERV1 1371 1955 -5830 2274 84 0 3 chr6 39427206 39427503 -149852051 + AluY SINE Alu 1 296 -15 655 312 71 63 chr6 39427503 39427611 -149851943 + Harlequin LTR ERV1 1955 4914 -2871 363 313 0 8 chr6 39427651 39427782 -149851772 + Harlequin LTR ERV1 4411 4540 -2109 21 0 0 0 chr6 39428108 39428129 -149851425 + AT_rich Low_complexity Low_complexity 1 21 0 593 287 62 81 chr6 39428236 39428849 -149850705 + Harlequin LTR ERV1 3386 5490 -1159 312 344 0 0 chr6 39428910 39429000 -149850554 - L1MC4 LINE L1 -1338 6704 6615 312 341 23 0 chr6 39428923 39429011 -149850543 + L1MC4 LINE L1 6614 6703 -1339 300 53 0 0 chr6 39429066 39429104 -149850450 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 1437 317 14 23 chr6 39429105 39429666 -149849888 + Harlequin LTR ERV1 7092 7647 -138 2141 196 32 21 chr6 39433041 39433608 -149845946 + L1MB2 LINE L1 4899 5475 -708 276 30 0 0 chr6 39433608 39433641 -149845913 + (CA)n Simple_repeat Simple_repeat 2 34 0 2141 196 32 21 chr6 39433641 39433897 -149845657 + L1MB2 LINE L1 5475 5727 -456 887 180 170 5 chr6 39433887 39434087 -149845467 + L1MB2 LINE L1 5938 6170 -1 * 426 194 0 0 chr6 39435827 39435899 -149843655 - FRAM/FAM SINE Alu -105 71 1 199 302 12 12 chr6 39436208 39436294 -149843260 - MIR3 SINE MIR -110 98 13 486 195 24 0 chr6 39437000 39437114 -149842440 + MLT1E2 LTR MaLR 387 626 0 1086 276 178 39 chr6 39437134 39437958 -149841596 + L2 LINE L2 718 1656 -1658 788 325 65 18 chr6 39437958 39438401 -149841153 + LTR16B LTR ERVL 1 464 0 3153 326 52 37 chr6 39439092 39441559 -149837995 + HERV16 LTR ERVL 858 3096 -1900 543 354 31 0 chr6 39441714 39441943 -149837611 + HERV16 LTR ERVL 4158 4393 -1092 368 338 50 38 chr6 39442553 39443029 -149836525 + HERV16 LTR ERVL 4779 5260 -504 806 315 42 16 chr6 39443043 39443424 -149836130 + LTR16B LTR ERVL 69 459 -5 407 189 0 0 chr6 39443546 39443620 -149835934 + MLT1F1 LTR MaLR 491 564 -3 343 191 39 39 chr6 39443763 39443941 -149835613 + CT-rich Low_complexity Low_complexity 3 180 0 439 265 144 44 chr6 39444167 39444465 -149835089 + L1ME3A LINE L1 5545 5872 -298 236 170 0 0 chr6 39444544 39444591 -149834963 - LTR66 LTR ERVL -170 440 394 310 243 29 0 chr6 39444591 39444661 -149834893 - L1MC4 LINE L1 -1351 6691 6620 457 77 0 0 chr6 39445552 39445617 -149833937 - MER41A LTR ERV1 -88 466 402 6430 93 9 4 chr6 39445971 39447512 -149832042 + L1PA10 LINE L1 4619 6163 -5 2102 228 40 29 chr6 39447597 39447696 -149831858 + MLT1F1 LTR MaLR 6 102 -465 2149 126 55 25 chr6 39447696 39448060 -149831494 + THE1C LTR MaLR 1 375 0 2102 228 40 29 chr6 39448060 39448516 -149831038 + MLT1F1 LTR MaLR 102 567 0 1501 201 0 3 chr6 39448589 39448877 -149830677 - AluJb SINE Alu -25 287 1 2127 201 82 58 chr6 39449039 39449572 -149829982 + MLT1E3 LTR MaLR 3 554 -70 1263 207 37 34 chr6 39449572 39449867 -149829687 + AluJo SINE Alu 1 296 -16 2127 201 82 58 chr6 39449867 39449940 -149829614 + MLT1E3 LTR MaLR 554 624 0 228 204 0 0 chr6 39450063 39450112 -149829442 - L2 LINE L2 0 3313 3265 209 284 161 0 chr6 39450160 39450241 -149829313 - L2 LINE L2 -553 2761 2668 233 151 0 38 chr6 39452367 39452420 -149827134 + G-rich Low_complexity Low_complexity 3 53 0 3777 184 63 45 chr6 39455213 39456150 -149823404 - LTR13 LTR ERVK 0 954 1 204 40 0 0 chr6 39456616 39456641 -149822913 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 253 304 11 43 chr6 39456685 39456777 -149822777 + L3 LINE CR1 934 1022 -555 200 316 88 26 chr6 39456790 39456904 -149822650 - L2 LINE L2 -2 3311 3191 435 117 0 1 chr6 39456907 39456991 -149822563 - MER30 DNA MER1_type 0 230 140 391 280 89 19 chr6 39457401 39457558 -149821996 + ERVL LTR ERVL 1989 2156 -3608 344 122 0 0 chr6 39458064 39458113 -149821441 + MLT1F LTR MaLR 491 539 -3 290 304 0 36 chr6 39458223 39458275 -149821279 + CT-rich Low_complexity Low_complexity 1 53 -55 2347 87 3 0 chr6 39458275 39458585 -149820969 - AluY SINE Alu 0 311 1 290 304 0 36 chr6 39458585 39458644 -149820910 + CT-rich Low_complexity Low_complexity 53 108 0 231 252 19 9 chr6 39458657 39458764 -149820790 + CT-rich Low_complexity Low_complexity 3 110 0 372 296 162 23 chr6 39459030 39459375 -149820179 + L1ME3A LINE L1 5559 5951 -219 248 235 0 0 chr6 39459395 39459463 -149820091 + L1MC4 LINE L1 6636 6703 -1339 242 278 0 0 chr6 39459419 39459509 -149820045 - L1MC4 LINE L1 -1339 6703 6614 * 3515 119 20 4 chr6 39459582 39460085 -149819469 - MER9 LTR ERVK 0 511 1 6220 83 20 13 chr6 39460916 39461914 -149817640 + L1PA10 LINE L1 5164 6163 -5 1949 226 44 28 chr6 39462002 39462101 -149817453 + MLT1F1 LTR MaLR 6 102 -465 2270 144 5 24 chr6 39462101 39462482 -149817072 + THE1C LTR MaLR 1 374 -1 1949 226 44 28 chr6 39462482 39462927 -149816627 + MLT1F1 LTR MaLR 102 559 -8 1494 220 25 0 chr6 39462998 39463284 -149816270 - AluJo SINE Alu -19 293 1 1734 219 96 46 chr6 39463447 39463733 -149815821 + MLT1E3 LTR MaLR 3 273 -351 2173 96 6 22 chr6 39463733 39464045 -149815509 + AluY SINE Alu 1 307 -4 1734 219 96 46 chr6 39464045 39464302 -149815252 + MLT1E3 LTR MaLR 273 573 -51 182 245 0 0 chr6 39464437 39464486 -149815068 - L2 LINE L2 0 3272 3224 207 289 67 22 chr6 39469968 39470058 -149809496 + L3 LINE CR1 934 1027 -550 201 313 70 17 chr6 39470070 39470185 -149809369 - L2 LINE L2 -2 3311 3191 382 128 0 1 chr6 39470188 39470272 -149809282 - MER30 DNA MER1_type 0 230 140 977 163 21 16 chr6 39471185 39471375 -149808179 + MLT1B LTR MaLR 200 390 0 189 304 87 47 chr6 39471807 39471978 -149807576 - MIR SINE MIR -65 197 21 180 0 0 0 chr6 39472524 39472544 -149807010 + (A)n Simple_repeat Simple_repeat 1 20 0 2359 98 0 3 chr6 39473983 39474290 -149805264 + AluSq SINE Alu 1 306 -7 364 315 163 0 chr6 39474321 39474505 -149805049 - MIR SINE MIR -27 235 22 192 367 0 51 chr6 39475833 39475912 -149803642 - MIR SINE MIR -165 97 23 1884 155 81 3 chr6 39475943 39476291 -149803263 + Tigger1 DNA MER2_type 2043 2417 -1 1664 275 104 8 chr6 39477478 39478100 -149801454 + L2 LINE L2 18 699 -2615 1724 243 87 19 chr6 39478102 39478678 -149800876 + MLT1E2 LTR MaLR 1 615 -11 2011 234 47 123 chr6 39478709 39479724 -149799830 + L2 LINE L2 719 1656 -1658 837 311 80 20 chr6 39479724 39480162 -149799392 + LTR16B LTR ERVL 1 464 0 520 339 41 22 chr6 39480843 39481162 -149798392 + ERVL LTR ERVL 853 1177 -3819 250 348 44 13 chr6 39481187 39481414 -149798140 + ERVL LTR ERVL 1302 1535 -4119 2773 316 36 42 chr6 39481524 39482698 -149796856 + ERVL LTR ERVL 1666 2832 -2164 2240 113 3 0 chr6 39482698 39482991 -149796563 + AluSp SINE Alu 1 294 -19 2773 316 36 42 chr6 39482991 39483255 -149796299 + ERVL LTR ERVL 2832 3096 -1900 494 317 92 7 chr6 39483290 39483583 -149795971 + ERVL LTR ERVL 3187 3504 -2260 1044 345 46 36 chr6 39483646 39484798 -149794756 + ERVL LTR ERVL 3739 5245 -519 528 324 54 16 chr6 39484828 39485201 -149794353 + LTR16B LTR ERVL 73 459 -5 375 130 32 2 chr6 39485320 39485392 -149794162 + MLT1F LTR MaLR 476 539 -3 304 291 0 29 chr6 39485502 39485545 -149794009 + CT-rich Low_complexity Low_complexity 1 44 -56 2350 103 0 3 chr6 39485545 39485846 -149793708 - AluY SINE Alu -11 300 1 304 291 0 29 chr6 39485846 39485905 -149793649 + CT-rich Low_complexity Low_complexity 44 100 0 263 204 46 9 chr6 39485918 39486026 -149793528 + CT-rich Low_complexity Low_complexity 3 114 0 256 275 140 31 chr6 39486259 39486642 -149792912 + L1ME3A LINE L1 5528 5951 -219 3648 127 0 4 chr6 39486739 39487251 -149792303 - MER9 LTR ERVK 0 511 2 6459 88 13 8 chr6 39488095 39489094 -149790460 + L1PA10 LINE L1 5164 6163 -5 2039 215 43 27 chr6 39489200 39489299 -149790255 + MLT1F1 LTR MaLR 6 102 -465 2356 136 5 24 chr6 39489299 39489681 -149789873 + THE1C LTR MaLR 1 375 0 2039 215 43 27 chr6 39489681 39490134 -149789420 + MLT1F1 LTR MaLR 102 567 0 1472 218 25 0 chr6 39490201 39490486 -149789068 - AluJb SINE Alu -19 293 2 1666 223 88 47 chr6 39490650 39490936 -149788618 + MLT1E3 LTR MaLR 3 276 -348 2234 100 0 40 chr6 39490936 39491257 -149788297 + AluYa5 SINE Alu 1 308 -3 1666 223 88 47 chr6 39491257 39491518 -149788036 + MLT1E3 LTR MaLR 276 572 -52 182 265 0 0 chr6 39491654 39491703 -149787851 - L2 LINE L2 0 3313 3265 207 260 40 0 chr6 39491751 39491801 -149787753 - L2 LINE L2 -553 2761 2710 195 100 0 0 chr6 39492632 39492662 -149786892 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr6 39493296 39493318 -149786236 + GC_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr6 39497098 39497123 -149782431 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 190 341 93 23 chr6 39497130 39497259 -149782295 + L3 LINE CR1 888 1025 -552 187 330 70 17 chr6 39497272 39497387 -149782167 - L2 LINE L2 -2 3311 3191 353 193 0 0 chr6 39497392 39497449 -149782105 - MER30 DNA MER1_type -2 228 172 1567 337 48 34 chr6 39497839 39498887 -149780667 + HERV16 LTR ERVL 2035 3096 -1900 518 176 20 0 chr6 39498973 39499075 -149780479 + AluSp/q SINE Alu 201 304 -9 210 37 0 0 chr6 39499355 39499382 -149780172 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2062 116 4 0 chr6 39499383 39499659 -149779895 - AluSq SINE Alu -36 277 1 2143 143 0 0 chr6 39499806 39500114 -149779440 + AluSg SINE Alu 1 308 -2 186 43 0 0 chr6 39500770 39500793 -149778761 + (T)n Simple_repeat Simple_repeat 1 23 0 7240 84 54 4 chr6 39500793 39501769 -149777785 - SVA Other Other -216 1170 146 942 148 0 0 chr6 39503439 39503594 -149775960 + MSTA LTR MaLR 1 155 -273 888 228 0 0 chr6 39503595 39503788 -149775766 + MSTB1-int LTR MaLR 287 479 -1172 1951 237 27 36 chr6 39503798 39504360 -149775194 + MSTB1-int LTR MaLR 1078 1634 -17 1685 212 66 15 chr6 39504376 39504787 -149774767 + MSTB1 LTR MaLR 1 432 0 490 268 78 14 chr6 39504806 39504948 -149774606 - MER21B LTR ERV1 -694 169 19 1817 239 21 24 chr6 39505047 39505558 -149773996 - MER21B-int LTR ERV1 -50 4141 3632 1618 268 30 45 chr6 39505697 39506271 -149773283 - MER21B-int LTR ERV1 -747 3444 2880 4076 242 120 46 chr6 39506277 39507593 -149771961 + L1M4 LINE L1 3242 4750 -1396 2322 71 51 0 chr6 39507593 39507887 -149771667 + AluY SINE Alu 1 309 -2 4076 242 120 46 chr6 39507887 39508515 -149771039 + L1M4 LINE L1 4750 5330 -816 540 233 9 84 chr6 39508516 39508731 -149770823 + L1MC/D LINE L1 4835 5033 -1113 609 182 0 0 chr6 39508737 39508836 -149770718 + FLAM_A SINE Alu 1 99 -43 1831 198 55 57 chr6 39508844 39509609 -149769945 + L1MC/D LINE L1 4993 5763 -596 778 219 233 3 chr6 39509617 39509960 -149769594 - Charlie1 DNA MER1_type -994 1767 40 648 248 22 12 chr6 39510189 39510397 -149769157 + L1PB4 LINE L1 5964 6302 0 186 103 0 0 chr6 39510441 39510470 -149769084 + (TG)n Simple_repeat Simple_repeat 2 30 0 2254 109 23 3 chr6 39514029 39514332 -149765222 - AluSc SINE Alu 0 309 1 937 120 44 85 chr6 39514914 39515146 -149764408 - MER30B DNA MER1_type 0 230 1 1050 292 105 8 chr6 39515269 39515897 -149763657 - L2 LINE L2 -253 3060 2381 397 250 109 31 chr6 39516215 39516380 -149763174 + L1MEc LINE L1 2145 2298 -3917 213 39 0 0 chr6 39516380 39516406 -149763148 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 397 250 109 31 chr6 39516406 39516503 -149763051 + L1MEc LINE L1 2298 2386 -3829 836 209 38 0 chr6 39516586 39516744 -149762810 - FRAM SINE Alu -14 162 1 476 210 179 31 chr6 39517256 39517418 -149762136 + MER20 DNA MER1_type 32 217 -2 279 266 180 16 chr6 39517424 39517558 -149761996 - MIR SINE MIR -59 149 14 1633 183 48 94 chr6 39519049 39519356 -149760198 + L1P5 LINE L1 4904 5223 -928 2473 97 0 0 chr6 39519356 39519666 -149759888 + AluSx SINE Alu 1 310 -2 1633 183 48 94 chr6 39519666 39519899 -149759655 + L1P5 LINE L1 5223 5420 -731 3026 182 43 19 chr6 39519899 39520570 -149758984 + L1MB4 LINE L1 5493 6179 -1 1633 183 48 94 chr6 39520570 39520607 -149758947 + L1P5 LINE L1 5420 5457 -694 368 302 94 38 chr6 39520607 39521185 -149758369 + L2 LINE L2 2569 3181 -132 1664 216 138 12 chr6 39521185 39521222 -149758332 - MLT2B3 LTR ERVL -3 551 520 788 38 53 0 chr6 39521222 39521355 -149758199 + (TAGA)n Simple_repeat Simple_repeat 4 143 0 1664 216 138 12 chr6 39521355 39521602 -149757952 - MLT2B3 LTR ERVL -34 520 305 267 104 0 0 chr6 39521602 39521650 -149757904 + (CAGAGA)n Simple_repeat Simple_repeat 1 48 0 1664 216 138 12 chr6 39521650 39521785 -149757769 - MLT2B3 LTR ERVL -249 305 78 1543 174 46 7 chr6 39521818 39522100 -149757454 - AluJb SINE Alu -19 293 1 1704 141 8 8 chr6 39522347 39522603 -149756951 + AluSx SINE Alu 35 290 -22 791 204 72 0 chr6 39522953 39523105 -149756449 + FAM SINE Alu 1 163 -12 230 93 74 0 chr6 39523330 39523384 -149756170 + (TA)n Simple_repeat Simple_repeat 1 58 0 1802 211 19 24 chr6 39524137 39524563 -149754991 - L1MB5 LINE L1 -8 6166 5743 203 161 0 0 chr6 39524604 39524635 -149754919 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 3715 228 69 74 chr6 39524649 39526193 -149753361 - L1M4c LINE L1 -4686 1960 376 1996 176 0 0 chr6 39526193 39526505 -149753049 - AluJb SINE Alu 0 312 1 3715 228 69 74 chr6 39526505 39526795 -149752759 - L1M4c LINE L1 -6270 376 86 200 246 35 0 chr6 39526805 39526862 -149752692 + MER5A DNA MER1_type 99 157 -32 2275 87 13 0 chr6 39526863 39527162 -149752392 - AluSp SINE Alu -10 303 1 186 331 75 38 chr6 39527323 39527483 -149752071 - L2 LINE L2 -4 3309 3144 321 294 65 49 chr6 39527663 39527930 -149751624 - L1MEc LINE L1 -4590 1992 1665 1991 185 46 73 chr6 39527951 39528514 -149751040 + LTR10A LTR ERV1 1 548 -61 721 258 0 6 chr6 39528654 39528832 -149750722 + MLT1D LTR MaLR 1 177 -328 265 279 74 42 chr6 39528865 39529080 -149750474 - L1M4 LINE L1 -2203 3943 3722 543 259 69 57 chr6 39529111 39529517 -149750037 + L1MC5 LINE L1 7091 7501 -460 2011 208 51 9 chr6 39531255 39531722 -149747832 + L1MB2 LINE L1 5685 6171 0 530 281 72 18 chr6 39531980 39532258 -149747296 + HAL1 LINE L1 1800 2092 -415 38 22 0 0 chr6 39532884 39532929 -149746625 + AT_rich Low_complexity Low_complexity 1 45 0 387 254 24 107 chr6 39532982 39533234 -149746320 + HAL1 LINE L1 2277 2507 0 23 68 0 0 chr6 39534380 39534424 -149745130 + AT_rich Low_complexity Low_complexity 1 44 0 335 288 141 0 chr6 39534424 39534594 -149744960 - MIR SINE MIR -39 223 30 397 279 0 16 chr6 39536330 39536452 -149743102 - L1MC4a LINE L1 -1844 5964 5845 490 285 108 34 chr6 39536656 39536948 -149742606 + L1ME3 LINE L1 5624 5937 -233 1389 232 0 4 chr6 39536952 39537232 -149742322 + AluJb SINE Alu 1 279 -33 207 0 0 0 chr6 39537235 39537258 -149742296 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1890 255 98 17 chr6 39537922 39538619 -149740935 + L1ME2 LINE L1 5411 6163 -1 230 189 19 0 chr6 39538663 39538716 -149740838 + L1M4 LINE L1 3742 3795 -2351 * 6267 166 26 39 chr6 39538688 39538966 -149740588 + L1MA4A LINE L1 3971 4251 -2052 2496 65 0 43 chr6 39538966 39539291 -149740263 + AluY SINE Alu 1 311 0 6267 166 26 39 chr6 39539291 39539549 -149740005 + L1MA4A LINE L1 4251 4511 -1792 788 197 0 0 chr6 39539549 39539681 -149739873 + FLAM_C SINE Alu 2 133 0 6267 166 26 39 chr6 39539681 39541346 -149738208 + L1MA4A LINE L1 4511 6137 -166 2431 73 0 32 chr6 39541346 39541660 -149737894 + AluY SINE Alu 1 304 -7 6267 166 26 39 chr6 39541660 39541825 -149737729 + L1MA4A LINE L1 6137 6303 0 227 182 0 109 chr6 39542260 39542315 -149737239 + MLT1B LTR MaLR 1 49 -341 * 1033 163 21 16 chr6 39542306 39542496 -149737058 + MLT1B LTR MaLR 200 390 0 180 0 0 0 chr6 39543645 39543665 -149735889 + (A)n Simple_repeat Simple_repeat 1 20 0 2338 98 0 3 chr6 39545104 39545411 -149734143 + AluSq SINE Alu 1 306 -7 2217 241 68 19 chr6 39545546 39546134 -149733420 + MLT1E3 LTR MaLR 6 622 -2 408 264 16 8 chr6 39546293 39546418 -149733136 - L2 LINE L2 0 3313 3188 290 312 43 22 chr6 39546426 39546564 -149732990 - L2 LINE L2 -549 2765 2625 2507 42 3 22 chr6 39546833 39547144 -149732410 + AluY SINE Alu 1 305 -6 1694 168 0 32 chr6 39547214 39547529 -149732025 + AluJo SINE Alu 1 305 -7 228 234 0 0 chr6 39549587 39549634 -149729920 + L1MA10 LINE L1 6185 6231 -103 2096 164 36 8 chr6 39550398 39550758 -149728796 + MSTA LTR MaLR 1 370 -58 28 0 0 0 chr6 39550787 39550815 -149728739 + AT_rich Low_complexity Low_complexity 1 28 0 479 113 0 0 chr6 39551667 39551738 -149727816 + MSTA LTR MaLR 358 428 0 2864 164 8 0 chr6 39551738 39552213 -149727341 + MSTB1-int LTR MaLR 1 479 -1172 2248 240 33 28 chr6 39552222 39552793 -149726761 + MSTB1-int LTR MaLR 1078 1651 0 1841 206 66 7 chr6 39552793 39553201 -149726353 + MSTB1 LTR MaLR 1 432 0 479 288 75 12 chr6 39553201 39553361 -149726193 - MER21B LTR ERV1 -675 188 19 3679 259 53 42 chr6 39553467 39554372 -149725182 - MER21B-int LTR ERV1 -58 4133 3209 2284 109 3 0 chr6 39554372 39554674 -149724880 - AluSx SINE Alu -9 303 1 3679 259 53 42 chr6 39554674 39555020 -149724534 - MER21B-int LTR ERV1 -982 3209 2868 4833 241 121 26 chr6 39555021 39556938 -149722616 + L1M4 LINE L1 3251 5348 -798 570 267 11 6 chr6 39556919 39557095 -149722459 + L1MC/D LINE L1 4842 5018 -1128 * 591 177 0 0 chr6 39557122 39557218 -149722336 + FLAM_A SINE Alu 1 96 -46 2061 203 68 26 chr6 39557231 39557963 -149721591 + L1MC/D LINE L1 4992 5765 -594 863 216 188 4 chr6 39557989 39558328 -149721226 - Charlie1 DNA MER1_type -1018 1743 38 584 274 9 50 chr6 39558533 39558752 -149720802 + L1PB4 LINE L1 5946 6155 -1 240 170 0 0 chr6 39558806 39558859 -149720695 + (TG)n Simple_repeat Simple_repeat 2 54 0 25 65 0 0 chr6 39559998 39560044 -149719510 + AT_rich Low_complexity Low_complexity 1 46 0 324 291 143 16 chr6 39560044 39560226 -149719328 - MIR SINE MIR -39 223 19 1335 265 103 14 chr6 39562838 39563460 -149716094 + L2 LINE L2 18 694 -2620 1733 237 114 14 chr6 39563467 39564038 -149715516 + MLT1E2 LTR MaLR 1 626 0 343 265 90 0 chr6 39564039 39564228 -149715326 + L2 LINE L2 698 903 -2411 1560 291 57 24 chr6 39564337 39565078 -149714476 + L2 LINE L2 892 1656 -1658 827 323 81 11 chr6 39565078 39565512 -149714042 + LTR16B LTR ERVL 1 464 0 2495 319 53 25 chr6 39566196 39568300 -149711254 + HERV16 LTR ERVL 853 3154 -2038 655 374 56 26 chr6 39568750 39569821 -149709733 + HERV16 LTR ERVL 4103 5205 -280 699 295 52 22 chr6 39569842 39570208 -149709346 + LTR16B LTR ERVL 62 438 -26 451 162 0 0 chr6 39570332 39570406 -149709148 + MLT1F1 LTR MaLR 491 564 -3 287 316 11 0 chr6 39570516 39570611 -149708943 + T-rich Low_complexity Low_complexity 2 97 0 222 184 40 13 chr6 39570612 39570688 -149708866 + CT-rich Low_complexity Low_complexity 1 78 0 2308 78 10 14 chr6 39570861 39571157 -149708397 + AluY SINE Alu 1 295 -16 523 297 143 23 chr6 39571243 39571634 -149707920 + L1ME3A LINE L1 5528 5965 -205 397 157 0 0 chr6 39572526 39572596 -149706958 - MER41A LTR ERV1 -86 468 399 6516 91 16 0 chr6 39572939 39574452 -149705102 + L1PA10 LINE L1 4619 6168 0 1922 221 99 27 chr6 39574536 39574629 -149704925 + MLT1F1 LTR MaLR 15 100 -467 2050 142 34 47 chr6 39574629 39575009 -149704545 + THE1C LTR MaLR 1 375 0 1922 221 99 27 chr6 39575009 39575431 -149704123 + MLT1F1 LTR MaLR 100 567 0 1329 216 3 21 chr6 39575504 39575795 -149703759 - AluJb SINE Alu -25 287 2 1708 225 70 50 chr6 39575959 39576493 -149703061 + MLT1E3 LTR MaLR 3 431 -74 1224 227 38 34 chr6 39576493 39576784 -149702770 + AluJo SINE Alu 1 292 -20 1708 225 70 50 chr6 39576784 39576861 -149702693 + MLT1E3 LTR MaLR 431 505 0 42086 56 15 1 chr6 39577031 39583074 -149696480 + L1PA6 LINE L1 22 6148 -6 342 93 19 0 chr6 39583762 39583816 -149695738 - MER41A LTR ERV1 -88 466 412 6082 101 19 7 chr6 39584183 39585715 -149693839 + L1PA10 LINE L1 4624 6166 -2 1938 247 47 27 chr6 39585793 39585892 -149693662 + MLT1F1 LTR MaLR 6 102 -465 2159 154 5 24 chr6 39585892 39586274 -149693280 + THE1C LTR MaLR 1 375 0 1938 247 47 27 chr6 39586274 39586725 -149692829 + MLT1F1 LTR MaLR 102 567 0 1578 183 3 14 chr6 39586777 39587091 -149692463 - AluJb SINE Alu 0 311 1 1868 244 88 21 chr6 39587264 39587789 -149691765 + MLT1E3 LTR MaLR 14 573 -51 204 157 0 39 chr6 39590135 39590186 -149689368 + G-rich Low_complexity Low_complexity 5 53 0 350 354 42 29 chr6 39590498 39590953 -149688601 + ERVL LTR ERVL 4518 4978 -786 864 304 39 13 chr6 39591209 39591591 -149687963 + LTR16B LTR ERVL 69 460 -4 361 218 0 0 chr6 39591703 39591781 -149687773 + MLT1F1 LTR MaLR 488 565 -2 204 125 0 0 chr6 39591921 39591953 -149687601 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 330 331 116 3 chr6 39592208 39592492 -149687062 + L1ME3A LINE L1 5554 5869 -301 1049 73 13 0 chr6 39592760 39592911 -149686643 + (TTTC)n Simple_repeat Simple_repeat 2 154 0 2198 113 0 0 chr6 39592913 39593196 -149686358 - AluSq SINE Alu -30 283 1 2140 229 51 22 chr6 39594302 39594848 -149684706 + MLT1F1 LTR MaLR 6 567 0 22 0 0 0 chr6 39594926 39594948 -149684606 + AT_rich Low_complexity Low_complexity 1 22 0 2217 241 68 19 chr6 39595051 39595639 -149683915 + MLT1E3 LTR MaLR 6 622 -2 408 264 16 8 chr6 39595798 39595923 -149683631 - L2 LINE L2 0 3313 3188 290 312 43 22 chr6 39595931 39596069 -149683485 - L2 LINE L2 -549 2765 2625 2507 42 3 22 chr6 39596338 39596649 -149682905 + AluY SINE Alu 1 305 -6 1694 168 0 32 chr6 39596719 39597034 -149682520 + AluJo SINE Alu 1 305 -7 228 234 0 0 chr6 39599092 39599139 -149680415 + L1MA10 LINE L1 6185 6231 -103 2096 164 36 8 chr6 39599903 39600263 -149679291 + MSTA LTR MaLR 1 370 -58 28 0 0 0 chr6 39600292 39600320 -149679234 + AT_rich Low_complexity Low_complexity 1 28 0 479 113 0 0 chr6 39601172 39601243 -149678311 + MSTA LTR MaLR 358 428 0 2864 164 8 0 chr6 39601243 39601718 -149677836 + MSTB1-int LTR MaLR 1 479 -1172 2248 240 33 28 chr6 39601727 39602298 -149677256 + MSTB1-int LTR MaLR 1078 1651 0 1841 206 66 7 chr6 39602298 39602706 -149676848 + MSTB1 LTR MaLR 1 432 0 479 288 75 12 chr6 39602706 39602866 -149676688 - MER21B LTR ERV1 -675 188 19 3679 259 53 42 chr6 39602972 39603877 -149675677 - MER21B-int LTR ERV1 -58 4133 3209 2284 109 3 0 chr6 39603877 39604179 -149675375 - AluSx SINE Alu -9 303 1 3679 259 53 42 chr6 39604179 39604525 -149675029 - MER21B-int LTR ERV1 -982 3209 2868 1321 284 73 8 chr6 39604526 39605062 -149674492 + L1M4 LINE L1 3251 3821 -2325 2495 319 53 25 chr6 39605558 39607662 -149671892 + HERV16 LTR ERVL 853 3154 -2038 655 374 56 26 chr6 39608112 39609183 -149670371 + HERV16 LTR ERVL 4103 5205 -280 699 295 52 22 chr6 39609204 39609570 -149669984 + LTR16B LTR ERVL 62 438 -26 451 162 0 0 chr6 39609694 39609768 -149669786 + MLT1F1 LTR MaLR 491 564 -3 287 316 11 0 chr6 39609878 39609973 -149669581 + T-rich Low_complexity Low_complexity 2 97 0 189 159 48 16 chr6 39609974 39610037 -149669517 + CT-rich Low_complexity Low_complexity 2 66 0 2308 78 10 14 chr6 39610223 39610519 -149669035 + AluY SINE Alu 1 295 -16 523 297 143 23 chr6 39610605 39610996 -149668558 + L1ME3A LINE L1 5528 5965 -205 397 157 0 0 chr6 39611888 39611958 -149667596 - MER41A LTR ERV1 -86 468 399 2482 118 30 15 chr6 39712030 39712200 -149567354 + L1PB3 LINE L1 5748 5914 -240 2612 120 12 5 chr6 39712200 39712600 -149566954 - MER57A LTR ERV1 0 403 1 2482 118 30 15 chr6 39712600 39712828 -149566726 + L1PB3 LINE L1 5914 6152 -2 2140 109 0 0 chr6 39712847 39713173 -149566381 + AluSx SINE Alu 1 326 0 261 146 0 0 chr6 39713190 39713238 -149566316 + (TG)n Simple_repeat Simple_repeat 2 49 0 782 314 112 20 chr6 39713389 39714094 -149565460 - L1MEd LINE L1 -2253 3876 3071 414 299 76 52 chr6 39714177 39714468 -149565086 - L1MEd LINE L1 -4884 1235 938 249 229 33 0 chr6 39714638 39714699 -149564855 - L1ME3A LINE L1 -89 6081 6019 253 246 15 15 chr6 39714742 39714807 -149564747 + L2 LINE L2 3238 3302 -11 527 275 155 28 chr6 39714877 39715161 -149564393 + MLT1I LTR MaLR 85 404 -5 191 271 0 0 chr6 39715798 39715846 -149563708 + MIR SINE MIR 206 253 -9 21 36 0 0 chr6 39716255 39716283 -149563271 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 39716873 39716896 -149562658 + (CA)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr6 39716953 39716976 -149562578 + AT_rich Low_complexity Low_complexity 1 23 0 255 133 0 0 chr6 39725182 39725227 -149554327 + (GGA)n Simple_repeat Simple_repeat 2 46 0 458 242 75 38 chr6 39725751 39725786 -149553768 - MER58A DNA MER1_type -2219 201 169 1700 138 93 13 chr6 39725786 39726098 -149553456 - MER1B DNA MER1_type 0 337 1 458 242 75 38 chr6 39726098 39726248 -149553306 - MER58A DNA MER1_type -2251 169 9 1798 101 54 82 chr6 39726342 39726658 -149552896 - AluSx SINE Alu -5 307 1 569 196 122 20 chr6 39726716 39726864 -149552690 + Tigger1 DNA MER2_type 1 163 -2255 1678 65 102 0 chr6 39729028 39729274 -149550280 + AluY SINE Alu 21 291 -20 203 336 173 0 chr6 39729673 39729777 -149549777 - MER5B DNA MER1_type -54 124 3 935 242 35 27 chr6 39731538 39731794 -149547760 - MIR SINE MIR -2 260 3 212 382 0 30 chr6 39731898 39732029 -149547525 - L2 LINE L2 -683 2631 2505 905 174 12 0 chr6 39732509 39732670 -149546884 - FRAM SINE Alu -13 163 1 1633 102 91 4 chr6 39732899 39733163 -149546391 - THE1C LTR MaLR 0 375 89 1955 126 72 13 chr6 39733288 39733606 -149545948 - MER1B DNA MER1_type 0 337 1 483 200 142 0 chr6 39733614 39733734 -149545820 - MIR SINE MIR -6 256 120 1812 134 0 21 chr6 39734620 39734910 -149544644 - AluSx SINE Alu -24 288 5 313 331 30 15 chr6 39735760 39735893 -149543661 - MIR SINE MIR -6 256 122 1706 135 6 48 chr6 39739307 39739619 -149539935 - AluSq SINE Alu -14 299 1 1802 151 6 6 chr6 39740343 39740654 -149538900 + AluJb SINE Alu 1 311 -1 197 228 43 65 chr6 39743828 39743920 -149535634 + L2 LINE L2 2970 3059 -213 1185 15 0 0 chr6 39746487 39746619 -149532935 - L1PA5 LINE L1 -585 5569 5438 4832 43 2 7 chr6 39746619 39747203 -149532351 + L1PA5 LINE L1 5572 6153 -1 271 279 29 19 chr6 39748815 39748919 -149530635 + MIR SINE MIR 108 212 -50 489 345 53 8 chr6 39749246 39749492 -149530062 + MIR SINE MIR 2 258 -4 282 275 45 124 chr6 39750847 39751025 -149528529 - MIR SINE MIR -70 192 29 197 371 181 13 chr6 39751855 39752313 -149527241 + L2 LINE L2 1856 2390 -924 272 358 80 18 chr6 39752366 39752592 -149526962 + L2 LINE L2 3032 3271 -1 338 316 32 39 chr6 39752953 39753108 -149526446 + L3 LINE CR1 1422 1575 -2 703 128 0 0 chr6 39753311 39753420 -149526134 + L1PA13 LINE L1 6048 6156 -7 765 188 141 48 chr6 39753730 39753941 -149525613 + MIR SINE MIR 34 262 0 789 212 68 56 chr6 39755617 39755867 -149523687 - MIR SINE MIR -4 258 6 446 325 77 44 chr6 39756471 39756522 -149523032 - L1ME LINE L1 -342 5828 5780 2179 179 42 0 chr6 39756522 39756930 -149522624 - MSTB1 LTR MaLR -4 428 4 446 325 77 44 chr6 39756930 39757939 -149521615 - L1ME LINE L1 -390 5780 4723 715 184 46 7 chr6 39758055 39758207 -149521347 + MER96B DNA MER1_type? 2 159 -258 209 239 197 43 chr6 39758207 39758324 -149521230 - L2 LINE L2 -1216 2098 1964 271 81 0 0 chr6 39758423 39758460 -149521094 + MSTB LTR MaLR 1 37 -389 3880 239 83 56 chr6 39759716 39760290 -149519264 + L1MEc LINE L1 1776 2333 -3882 2811 87 21 0 chr6 39760290 39760679 -149518875 + L1PA8 LINE L1 5772 6168 -4 3880 239 83 56 chr6 39760679 39761742 -149517812 + L1MEc LINE L1 2333 3466 -2749 887 163 121 133 chr6 39761742 39762148 -149517406 + MER57A LTR ERV1 3 403 0 3880 239 83 56 chr6 39762148 39762801 -149516753 + L1MEc LINE L1 3466 4100 -2115 5385 86 33 18 chr6 39763329 39764181 -149515373 + SVA Other Other 2 866 -520 6631 68 4 35 chr6 39764200 39765185 -149514369 + SVA Other Other 433 1386 0 309 328 39 8 chr6 39765440 39765568 -149513986 - L2 LINE L2 -1105 2209 2078 416 374 50 23 chr6 39765667 39765969 -149513585 + L3 LINE CR1 917 1226 -351 1059 58 29 0 chr6 39767479 39767616 -149511938 + HERVK22 LTR ERVK 4226 4366 -2471 * 52260 87 3 5 chr6 39767613 39774434 -149505120 - HERVK22 LTR ERVK -29 6808 3 2064 161 108 50 chr6 39774436 39774901 -149504653 - LTR22B LTR ERVK 0 492 1 7075 196 24 17 chr6 39774901 39776467 -149503087 + L1MA4A LINE L1 3242 4817 -1329 1413 226 22 11 chr6 39776482 39776853 -149502701 + L1PB1 LINE L1 6 380 -6483 * 4282 69 42 0 chr6 39776839 39777391 -149502163 - THE1B-int LTR MaLR -1005 575 1 2271 126 25 27 chr6 39777391 39777756 -149501798 - THE1B LTR MaLR 0 364 1 11814 190 10 31 chr6 39777756 39778113 -149501441 + L1PB1 LINE L1 3337 3700 -3167 2398 91 13 0 chr6 39778113 39778421 -149501133 + AluSq SINE Alu 1 312 -1 11814 190 10 31 chr6 39778421 39779589 -149499965 + L1PB1 LINE L1 3700 4891 -1976 7509 21 0 0 chr6 39779589 39780392 -149499162 + L1PA3 LINE L1 5346 6153 -2 11814 190 10 31 chr6 39780392 39782110 -149497444 + L1PB1 LINE L1 4891 6507 -360 392 81 41 41 chr6 39782110 39782233 -149497321 + (TA)n Simple_repeat Simple_repeat 1 123 0 2686 118 0 3 chr6 39782234 39782607 -149496947 + L1PB1 LINE L1 6492 6863 -4 5572 135 18 79 chr6 39782622 39783134 -149496420 + L1MA4A LINE L1 4802 5344 -959 1244 176 61 32 chr6 39783134 39783413 -149496141 + AluJo SINE Alu 1 287 -25 215 30 0 30 chr6 39783413 39783446 -149496108 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 5572 135 18 79 chr6 39783446 39783648 -149495906 + L1MA4A LINE L1 5343 5556 -747 729 195 8 0 chr6 39783648 39783776 -149495778 + FLAM_C SINE Alu 5 133 0 5572 135 18 79 chr6 39783776 39784642 -149494912 + L1MA4A LINE L1 5556 6295 -8 1002 244 156 10 chr6 39784951 39785259 -149494295 + MER69 DNA AcHobo 1 353 -2173 636 254 0 0 chr6 39785647 39785789 -149493765 + MER69 DNA AcHobo 1845 1986 -540 1757 164 6 29 chr6 39786199 39786511 -149493043 + AluJo SINE Alu 1 305 -7 278 209 36 36 chr6 39786975 39787085 -149492469 + L1MDb LINE L1 1130 1239 -5170 * 3568 241 27 8 chr6 39787081 39787858 -149491696 + L1M4 LINE L1 4 795 -5747 1148 207 55 48 chr6 39787858 39788252 -149491302 + MSTB2 LTR MaLR 1 445 -8 3740 216 31 20 chr6 39788255 39789264 -149490290 + L1M4 LINE L1 790 1818 -4828 487 214 0 0 chr6 39789264 39789348 -149490206 + AluJ/FLAM SINE Alu 2 85 -227 339 192 0 0 chr6 39789387 39789460 -149490094 + GA-rich Low_complexity Low_complexity 2 74 0 1102 267 105 63 chr6 39789464 39790413 -149489141 + L1M4 LINE L1 1964 2952 -3873 671 244 38 83 chr6 39790409 39790501 -149489053 + L1M4 LINE L1 3493 3588 -3056 * 2044 125 3 0 chr6 39790501 39790789 -149488765 + AluSx SINE Alu 1 289 -23 671 244 38 83 chr6 39790789 39790821 -149488733 + L1M4 LINE L1 3588 3620 -3024 213 39 0 0 chr6 39790821 39790847 -149488707 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 671 244 38 83 chr6 39790847 39791151 -149488403 + L1M4 LINE L1 3620 3902 -2742 609 166 43 86 chr6 39791151 39791290 -149488264 + FLAM_A SINE Alu 1 133 0 671 244 38 83 chr6 39791290 39791330 -149488224 + L1M4 LINE L1 3902 3942 -2702 1692 261 40 84 chr6 39791361 39791543 -149488011 + L1MB2 LINE L1 2785 2973 -3173 1778 180 3 13 chr6 39791543 39791854 -149487700 + AluJo SINE Alu 5 312 0 1692 261 40 84 chr6 39791854 39792792 -149486762 + L1MB2 LINE L1 2973 3856 -2290 281 235 82 0 chr6 39792788 39792874 -149486680 + L1MC4 LINE L1 7315 7502 -493 * 641 250 26 7 chr6 39792890 39793042 -149486512 + L1MC4 LINE L1 7315 7469 -573 290 276 20 20 chr6 39793054 39793152 -149486402 + LTR67 LTR ERVL 460 557 0 201 374 43 12 chr6 39793173 39793336 -149486218 - MIR SINE MIR -76 186 19 183 42 0 0 chr6 39793696 39793720 -149485834 + (TC)n Simple_repeat Simple_repeat 1 24 0 183 354 105 6 chr6 39793904 39794085 -149485469 - L2 LINE L2 -1040 2274 2076 201 244 0 0 chr6 39794888 39794929 -149484625 + GA-rich Low_complexity Low_complexity 2 42 0 195 232 0 0 chr6 39794942 39794998 -149484556 + GA-rich Low_complexity Low_complexity 2 57 0 300 172 26 46 chr6 39795151 39795302 -149484252 + GA-rich Low_complexity Low_complexity 4 151 0 2447 47 40 3 chr6 39796374 39796674 -149482880 + AluY SINE Alu 1 311 0 342 0 0 0 chr6 39796678 39796716 -149482838 + (TA)n Simple_repeat Simple_repeat 1 38 0 185 94 31 0 chr6 39796997 39797029 -149482525 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1914 201 37 33 chr6 39797175 39797662 -149481892 + L1MB2 LINE L1 4823 5311 -835 8398 144 44 29 chr6 39797662 39800184 -149479370 + L1MA8 LINE L1 3726 6287 -4 3783 190 35 29 chr6 39800178 39801014 -149478540 + L1MB2 LINE L1 5296 6136 -35 * 3013 231 162 29 chr6 39801009 39801965 -149477589 - MLT-int LTR MaLR -139 1596 514 * 1703 134 84 66 chr6 39802332 39802712 -149476842 - MLT1B LTR MaLR -3 387 1 1064 183 19 33 chr6 39802787 39803000 -149476554 - MER20 DNA MER1_type 0 219 10 477 298 174 52 chr6 39805866 39806628 -149472926 - L2 LINE L2 -1172 2142 1288 316 354 130 14 chr6 39806820 39807043 -149472511 + L2 LINE L2 2836 3084 -188 948 180 148 7 chr6 39809442 39809726 -149469828 - MER33 DNA MER1_type 0 324 1 241 291 87 19 chr6 39809726 39809829 -149469725 + L2 LINE L2 3163 3272 0 508 329 83 19 chr6 39810789 39811114 -149468440 + L1MEd LINE L1 868 1213 -4906 1779 114 23 62 chr6 39811646 39811981 -149467573 + AluSx SINE Alu 1 312 0 378 272 79 69 chr6 39812049 39812454 -149467100 + MLT1I LTR MaLR 1 445 -5 369 303 113 22 chr6 39812458 39812828 -149466726 + L1MEd LINE L1 2139 2542 -3587 991 163 0 6 chr6 39812832 39812998 -149466556 + FRAM SINE Alu 1 165 -11 262 296 49 0 chr6 39813422 39813503 -149466051 - L2 LINE L2 -1 3312 3228 271 331 41 41 chr6 39813649 39813794 -149465760 + MER5A DNA MER1_type 20 164 -25 253 326 35 42 chr6 39813665 39813809 -149465745 - MER5A DNA MER1_type -28 161 19 * 203 0 0 36 chr6 39813915 39813943 -149465611 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 331 143 127 0 chr6 39813966 39814029 -149465525 - LTR33 LTR ERVL -364 157 87 26 30 0 0 chr6 39814185 39814218 -149465336 + AT_rich Low_complexity Low_complexity 1 33 0 198 245 19 19 chr6 39815431 39815484 -149464070 - MIR SINE MIR -135 73 21 221 218 19 100 chr6 39818325 39818385 -149461169 + MER5B DNA MER1_type 5 59 -130 1789 151 0 11 chr6 39818385 39818690 -149460864 + AluJo SINE Alu 1 302 0 221 218 19 100 chr6 39818690 39818756 -149460798 + MER5B DNA MER1_type 59 129 -60 2069 127 3 0 chr6 39818769 39819053 -149460501 - AluSc SINE Alu -24 285 1 2625 266 77 26 chr6 39820499 39821532 -149458022 - HAL1 LINE L1 0 2507 1422 2360 110 0 0 chr6 39821615 39821925 -149457629 - AluSx SINE Alu -2 310 1 372 285 71 36 chr6 39822001 39822254 -149457300 + L2 LINE L2 2925 3186 -86 418 308 138 0 chr6 39823139 39823334 -149456220 - MIR SINE MIR -38 224 3 190 347 76 21 chr6 39823563 39823707 -149455847 + L2 LINE L2 2741 2892 -422 193 293 0 0 chr6 39824443 39824501 -149455053 - MIR SINE MIR -15 247 190 2076 101 0 0 chr6 39824676 39824943 -149454611 - AluSg SINE Alu -9 301 35 538 221 75 122 chr6 39824992 39825108 -149454446 + L1MC4a LINE L1 5706 5826 -1982 1334 103 66 33 chr6 39825108 39825167 -149454387 + L1MA4A LINE L1 6053 6109 -194 275 0 0 28 chr6 39825167 39825203 -149454351 + (TA)n Simple_repeat Simple_repeat 2 36 0 1334 103 66 33 chr6 39825203 39825386 -149454168 + L1MA4A LINE L1 6109 6303 0 538 221 75 122 chr6 39825386 39825543 -149454011 + L1MC4a LINE L1 5826 5960 -1848 1773 186 3 0 chr6 39825543 39825828 -149453726 + AluJo SINE Alu 1 286 -26 538 221 75 122 chr6 39825828 39825915 -149453639 + L1MC4a LINE L1 5960 6050 -1758 917 181 0 92 chr6 39826098 39826355 -149453199 - AluJo SINE Alu 0 312 86 2153 125 0 6 chr6 39826520 39826832 -149452722 + AluSg SINE Alu 1 310 0 24 32 0 0 chr6 39826871 39826902 -149452652 + AT_rich Low_complexity Low_complexity 1 31 0 1269 268 39 8 chr6 39826938 39827300 -149452254 + L1MC4 LINE L1 6696 7068 -974 479 278 99 27 chr6 39827449 39828314 -149451240 + L1MC5 LINE L1 7102 7862 -99 1242 187 33 122 chr6 39828315 39828710 -149450844 - MSTD LTR MaLR 0 396 37 259 33 0 0 chr6 39828941 39828971 -149450583 - MSTD LTR MaLR -366 30 1 306 0 0 0 chr6 39829037 39829071 -149450483 + (TG)n Simple_repeat Simple_repeat 2 35 0 2357 95 0 0 chr6 39829165 39829461 -149450093 - AluSx SINE Alu -16 296 1 27 0 0 0 chr6 39829468 39829495 -149450059 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr6 39829515 39829536 -149450018 + AT_rich Low_complexity Low_complexity 1 21 0 200 271 0 0 chr6 39829798 39829868 -149449686 + (TATAA)n Simple_repeat Simple_repeat 1 70 0 2744 42 0 0 chr6 39829963 39830274 -149449280 + AluY SINE Alu 1 311 0 688 206 36 0 chr6 39830771 39830936 -149448618 + L1 LINE L1 3289 3459 -2687 9380 182 15 27 chr6 39830936 39831611 -149447943 + L1 LINE L1 3381 4062 -2084 1895 133 0 59 chr6 39831611 39831933 -149447621 + AluSx SINE Alu 1 303 -9 9380 182 15 27 chr6 39831933 39832846 -149446708 + L1 LINE L1 4062 4944 -1202 2160 127 7 3 chr6 39832846 39833154 -149446400 + AluSg SINE Alu 1 309 -1 9380 182 15 27 chr6 39833154 39833581 -149445973 + L1 LINE L1 4944 5374 -772 367 379 0 0 chr6 39833688 39833804 -149445750 + polypurine Low_complexity Low_complexity 3 118 0 389 257 12 23 chr6 39833804 39833975 -149445579 + A-rich Low_complexity Low_complexity 3 171 0 240 269 0 30 chr6 39833976 39834043 -149445511 + GA-rich Low_complexity Low_complexity 1 65 0 511 311 54 31 chr6 39835401 39835752 -149443802 + L2 LINE L2 1746 2104 -1210 775 143 74 95 chr6 39836158 39836315 -149443239 - MER3 DNA MER1_type -24 185 31 2190 103 10 0 chr6 39836315 39836607 -149442947 - AluSg SINE Alu -15 295 1 775 143 74 95 chr6 39836607 39836638 -149442916 - MER3 DNA MER1_type -178 31 1 323 330 116 74 chr6 39836791 39837197 -149442357 + L2 LINE L2 2825 3247 -25 720 216 82 24 chr6 39837668 39837806 -149441748 - MIR SINE MIR -10 252 97 1542 207 61 13 chr6 39837806 39838010 -149441544 - MSTD LTR MaLR -1 395 202 2427 83 0 0 chr6 39838010 39838311 -149441243 - AluY SINE Alu -10 301 1 1542 207 61 13 chr6 39838311 39838483 -149441071 - MSTD LTR MaLR -194 202 1 720 216 82 24 chr6 39838483 39838552 -149441002 - MIR SINE MIR -165 97 33 520 184 29 10 chr6 39838885 39838988 -149440566 - Charlie4a DNA MER1_type 0 508 404 1169 103 143 36 chr6 39839007 39839231 -149440323 + MER44D DNA MER2_type 1 518 -91 925 194 112 40 chr6 39839321 39839599 -149439955 - Charlie4a DNA MER1_type -179 329 32 6789 132 24 17 chr6 39839605 39841638 -149437916 - L1MA4 LINE L1 0 6300 4256 232 230 230 37 chr6 39841667 39841802 -149437752 + L2 LINE L2 3152 3312 -1 * 311 218 39 13 chr6 39841800 39841878 -149437676 + MIR SINE MIR 106 185 -77 1999 129 0 39 chr6 39842118 39842428 -149437126 + AluSc SINE Alu 1 298 -11 208 300 89 11 chr6 39842738 39842828 -149436726 - L2 LINE L2 -190 3082 2986 246 334 116 36 chr6 39842881 39843270 -149436284 - L2 LINE L2 -568 2746 2327 358 269 75 50 chr6 39843488 39843770 -149435784 + L1MC5 LINE L1 7637 7925 -36 25 0 0 0 chr6 39843806 39843831 -149435723 + AT_rich Low_complexity Low_complexity 1 25 0 257 176 24 94 chr6 39844304 39844389 -149435165 + LTR67 LTR ERVL 458 536 -21 33 43 0 0 chr6 39844398 39844445 -149435109 + AT_rich Low_complexity Low_complexity 1 47 0 248 67 0 0 chr6 39844562 39844592 -149434962 + U6 snRNA snRNA 76 105 -2 602 282 92 32 chr6 39844629 39845030 -149434524 - L2 LINE L2 -996 2318 1894 2135 108 7 33 chr6 39845154 39845460 -149434094 - AluSg SINE Alu -12 298 1 954 172 17 17 chr6 39846137 39846311 -149433243 + MER58B DNA MER1_type 7 180 -161 191 319 17 25 chr6 39846311 39846430 -149433124 - L2 LINE L2 -1161 2153 2036 842 172 55 0 chr6 39846437 39846582 -149432972 + MER58B DNA MER1_type 189 341 0 906 171 73 6 chr6 39846914 39847078 -149432476 + FAM SINE Alu 1 175 0 358 315 84 11 chr6 39847183 39847456 -149432098 + L2 LINE L2 1723 2015 -1299 389 281 45 20 chr6 39847541 39847723 -149431831 + LTR33A LTR ERVL 1 160 -363 363 265 38 15 chr6 39848002 39848134 -149431420 + LTR33A LTR ERVL 380 514 -9 514 347 68 20 chr6 39848178 39848636 -149430918 + L2 LINE L2 2139 2618 -696 196 313 116 27 chr6 39848730 39848877 -149430677 + L2 LINE L2 2661 2820 -494 233 358 57 24 chr6 39849225 39849348 -149430206 + L2 LINE L2 3142 3268 -4 412 246 172 0 chr6 39850101 39850235 -149429319 - MIR SINE MIR -54 208 52 531 326 101 0 chr6 39850707 39850885 -149428669 - MER91A DNA MER1_type 0 196 1 22 25 0 25 chr6 39850895 39850922 -149428632 + AT_rich Low_complexity Low_complexity 1 28 -11 2308 103 0 6 chr6 39850922 39851233 -149428321 - AluSx SINE Alu -3 309 1 22 25 0 25 chr6 39851233 39851245 -149428309 + AT_rich Low_complexity Low_complexity 28 39 0 2003 136 7 3 chr6 39851245 39851532 -149428022 - AluJo SINE Alu -24 288 1 2070 119 20 3 chr6 39851712 39852005 -149427549 - AluSg SINE Alu -12 298 1 203 216 20 20 chr6 39852535 39852586 -149426968 + L2 LINE L2 3263 3313 0 234 91 0 0 chr6 39853935 39853968 -149425586 + (GGA)n Simple_repeat Simple_repeat 1 33 0 463 252 41 27 chr6 39855122 39855269 -149424285 + MIR SINE MIR 16 164 -98 323 241 62 45 chr6 39855269 39855381 -149424173 + L1M4 LINE L1 5443 5556 -618 334 221 0 26 chr6 39855460 39855537 -149424017 + MIR SINE MIR 173 247 -15 531 178 0 10 chr6 39855793 39855894 -149423660 + MIR3 SINE MIR 81 180 -28 488 280 63 62 chr6 39856304 39856897 -149422657 - L1P4 LINE L1 -600 5561 4336 357 315 10 0 chr6 39856897 39857016 -149422538 + MIR SINE MIR 30 148 -62 208 237 0 0 chr6 39858818 39858856 -149420698 + (TG)n Simple_repeat Simple_repeat 2 39 0 2488 73 7 0 chr6 39858951 39859253 -149420301 - AluSx SINE Alu -8 304 1 1895 140 13 48 chr6 39859801 39860115 -149419439 + AluSx SINE Alu 1 303 -9 5714 111 2 4 chr6 39860143 39860947 -149418607 + L1PA15 LINE L1 5357 6159 -6 24 0 0 0 chr6 39860947 39860971 -149418583 + AT_rich Low_complexity Low_complexity 1 24 0 454 297 101 0 chr6 39862289 39862427 -149417127 + L2 LINE L2 3117 3268 -4 1213 246 51 37 chr6 39862788 39863142 -149416412 - MER21B LTR ERV1 -51 812 454 1146 124 88 0 chr6 39863142 39863336 -149416218 - L1MA5A LINE L1 -19 6278 6068 1448 221 119 29 chr6 39863352 39863773 -149415781 - MER21B LTR ERV1 -382 481 23 231 74 74 0 chr6 39863809 39863863 -149415691 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 184 279 59 0 chr6 39864495 39864563 -149414991 - MER5B DNA MER1_type -80 98 27 391 277 20 54 chr6 39864650 39864798 -149414756 + MER5A DNA MER1_type 1 143 -46 442 208 17 42 chr6 39868527 39868647 -149410907 + MIR SINE MIR 142 258 -4 537 297 18 6 chr6 39868809 39868974 -149410580 - MIR SINE MIR -10 252 86 201 138 35 35 chr6 39869397 39869455 -149410099 + T-rich Low_complexity Low_complexity 4 61 0 2297 106 3 6 chr6 39869547 39869859 -149409695 - AluSq SINE Alu -2 311 1 261 0 0 0 chr6 39870290 39870319 -149409235 + (TG)n Simple_repeat Simple_repeat 1 29 0 302 241 28 0 chr6 39870334 39870479 -149409075 + GA-rich Low_complexity Low_complexity 1 149 0 259 259 17 0 chr6 39870561 39870619 -149408935 - L3 LINE CR1 -16 1561 1503 460 301 78 25 chr6 39871298 39871726 -149407828 - LTR33 LTR ERVL -8 513 12 490 329 48 28 chr6 39871905 39872194 -149407360 - L1M4 LINE L1 -1534 4612 4318 3570 167 18 6 chr6 39872198 39872864 -149406690 - L1MB2 LINE L1 -7 6164 5491 409 151 0 21 chr6 39872865 39872958 -149406596 + CT-rich Low_complexity Low_complexity 3 93 0 856 198 42 18 chr6 39872958 39873217 -149406337 - L1MB2 LINE L1 -682 5489 5225 422 329 132 17 chr6 39873234 39873313 -149406241 - L1M4 LINE L1 -1805 4341 4272 210 118 0 0 chr6 39873313 39873347 -149406207 + (TTG)n Simple_repeat Simple_repeat 1 34 0 422 329 132 17 chr6 39873347 39873556 -149405998 - L1M4 LINE L1 -1874 4272 4020 4126 156 67 48 chr6 39873557 39874259 -149405295 - L1MD1 LINE L1 -30 6606 5919 2445 74 0 0 chr6 39874259 39874557 -149404997 - AluY SINE Alu -13 298 1 4126 156 67 48 chr6 39874557 39874755 -149404799 - L1MD1 LINE L1 -717 5919 5726 1627 126 152 4 chr6 39874755 39875018 -149404536 - AluSx SINE Alu 0 302 1 4126 156 67 48 chr6 39875018 39875340 -149404214 - L1MD1 LINE L1 -910 5726 5360 306 148 23 45 chr6 39875481 39875569 -149403985 - L1MD1 LINE L1 -2868 3672 3587 1841 149 0 4 chr6 39875569 39875844 -149403710 - AluSx SINE Alu -38 274 1 232 219 96 0 chr6 39875844 39875917 -149403637 - L1MD1 LINE L1 -3020 3520 3441 669 88 0 39 chr6 39875923 39876025 -149403529 - FLAM_A SINE Alu -12 130 33 354 179 0 0 chr6 39876032 39876110 -149403444 - L1MD1 LINE L1 -3106 3434 3357 6773 97 11 18 chr6 39876128 39876954 -149402600 - L1MA1 LINE L1 -7 6295 5477 2231 107 0 0 chr6 39876954 39877245 -149402309 - AluSx SINE Alu -21 291 1 6773 97 11 18 chr6 39877245 39877526 -149402028 - L1MA1 LINE L1 -825 5477 5196 940 199 45 14 chr6 39877530 39877816 -149401738 - L1MD1 LINE L1 -3177 3363 3069 * 3726 136 57 25 chr6 39877790 39878479 -149401075 + L1PA15 LINE L1 5342 6052 -113 1551 206 22 96 chr6 39878493 39878788 -149400766 - L1M4 LINE L1 -3311 2835 2612 2376 68 3 10 chr6 39878788 39879099 -149400455 - AluY SINE Alu -2 309 1 1551 206 22 96 chr6 39879099 39879447 -149400107 - L1M4 LINE L1 -3534 2612 2240 1853 144 44 13 chr6 39879459 39879757 -149399797 - AluSx SINE Alu -5 307 1 249 109 0 0 chr6 39879780 39879826 -149399728 + (T)n Simple_repeat Simple_repeat 1 46 0 241 158 0 0 chr6 39879830 39879868 -149399686 - Alu SINE Alu -262 38 1 729 199 6 0 chr6 39879939 39880095 -149399459 - L1MA3 LINE L1 -2 6303 6147 980 197 35 102 chr6 39880109 39880480 -149399074 - MLT1A2 LTR MaLR -11 363 18 2153 141 72 27 chr6 39880500 39881011 -149398543 - L1MD1 LINE L1 -4019 2521 1988 2405 204 29 50 chr6 39881047 39881629 -149397925 - L1MD1 LINE L1 -5945 595 26 314 304 45 24 chr6 39881642 39881977 -149397577 - L1MEd LINE L1 -2143 3986 3645 519 264 89 13 chr6 39882054 39882368 -149397186 - L1MEd LINE L1 -2929 3200 2863 299 171 198 36 chr6 39882383 39882494 -149397060 - L1MC4 LINE L1 0 8042 7914 739 239 42 35 chr6 39882629 39882918 -149396636 - L1MC4 LINE L1 -167 7875 7585 349 304 0 6 chr6 39883009 39883170 -149396384 - L1MEd LINE L1 -3562 2567 2408 2348 109 0 6 chr6 39883217 39883530 -149396024 - AluSq SINE Alu -2 311 1 1961 137 3 3 chr6 39883563 39883899 -149395655 + AluSq SINE Alu 1 336 0 2127 105 7 24 chr6 39883906 39884202 -149395352 + AluSx SINE Alu 1 291 -21 7290 167 21 0 chr6 39884342 39885051 -149394503 + L1PA13 LINE L1 3943 4635 -1528 2120 95 3 14 chr6 39885051 39885347 -149394207 - AluSp SINE Alu -20 293 1 7290 167 21 0 chr6 39885347 39886847 -149392707 + L1PA13 LINE L1 4635 6158 -5 198 0 0 0 chr6 39887357 39887379 -149392175 + (T)n Simple_repeat Simple_repeat 1 22 0 296 325 63 0 chr6 39887418 39887609 -149391945 - HAL1 LINE L1 -854 1653 1451 1421 99 59 36 chr6 39887639 39887861 -149391693 - AluSx SINE Alu -83 229 3 455 327 101 31 chr6 39887999 39888357 -149391197 - L1MEd LINE L1 -4921 1198 816 234 0 0 0 chr6 39890173 39890199 -149389355 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 440 296 51 34 chr6 39891733 39891909 -149387645 + MER5A DNA MER1_type 8 186 -3 2354 93 0 0 chr6 39892139 39892440 -149387114 - AluSg SINE Alu -9 301 1 365 253 11 0 chr6 39892868 39892955 -149386599 - Charlie7 DNA MER1_type -2520 92 5 290 400 19 0 chr6 39893490 39893595 -149385959 + L2 LINE L2 3149 3255 -17 296 330 26 35 chr6 39893794 39893909 -149385645 - MIR3 SINE MIR -27 181 68 369 0 0 0 chr6 39894415 39894456 -149385098 + (TA)n Simple_repeat Simple_repeat 2 42 0 464 353 55 48 chr6 39894696 39895096 -149384458 - L1ME3A LINE L1 -300 5870 5468 282 289 13 13 chr6 39895105 39895254 -149384300 - L1ME3A LINE L1 -1088 5058 4910 5222 170 57 46 chr6 39895266 39897175 -149382379 + Charlie1 DNA MER1_type 1 2056 -705 1598 189 3 17 chr6 39897175 39897466 -149382088 - AluJo SINE Alu -23 289 3 5222 170 57 46 chr6 39897466 39897617 -149381937 + Charlie1 DNA MER1_type 2056 2204 -557 1700 160 35 0 chr6 39897916 39898204 -149381350 - AluJb SINE Alu -14 298 1 276 338 39 32 chr6 39898254 39898408 -149381146 + L2 LINE L2 2919 3073 -199 1038 167 142 50 chr6 39899136 39899417 -149380137 + MER44D DNA MER2_type 14 590 -19 1067 199 109 23 chr6 39899471 39899791 -149379763 - MSTD LTR MaLR 0 396 1 2659 105 55 36 chr6 39900986 39901462 -149378092 - L1MC2 LINE L1 -13 6331 5847 734 179 0 82 chr6 39901462 39901646 -149377908 + MER20 DNA MER1_type 51 219 0 * 5337 212 68 100 chr6 39901646 39901843 -149377711 + Charlie2b DNA MER1_type 407 609 -2253 665 191 0 59 chr6 39901843 39901979 -149377575 - FLAM_A SINE Alu -1 132 5 5337 212 68 100 chr6 39901979 39902247 -149377307 + Charlie2b DNA MER1_type 609 884 -1978 407 162 14 0 chr6 39902247 39902321 -149377233 - AluJ/FLAM SINE Alu -237 75 1 5337 212 68 100 chr6 39902321 39903664 -149375890 + Charlie2b DNA MER1_type 884 2268 -594 1614 160 132 0 chr6 39903664 39903983 -149375571 + MER46B DNA MER2_type 1 236 0 5337 212 68 100 chr6 39903983 39904038 -149375516 + Charlie2b DNA MER1_type 2268 2323 -539 1950 137 7 14 chr6 39904038 39904330 -149375224 - AluJb SINE Alu -22 290 1 5337 212 68 100 chr6 39904330 39904821 -149374733 + Charlie2b DNA MER1_type 2323 2759 -23 559 193 76 10 chr6 39906821 39907089 -149372465 - MER69 DNA AcHobo -1696 830 505 203 308 0 31 chr6 39908784 39908849 -149370705 + G-rich Low_complexity Low_complexity 3 65 0 2055 114 0 0 chr6 39909260 39909549 -149370005 - AluSx SINE Alu -18 294 6 453 198 0 41 chr6 39909743 39909864 -149369690 - MER112 DNA MER1_type -78 182 67 2578 127 18 34 chr6 39910927 39911151 -149368403 + Tigger2a DNA MER2_type 1 216 -2492 1815 151 24 0 chr6 39911151 39911442 -149368112 - AluJo SINE Alu -14 298 1 2578 127 18 34 chr6 39911442 39911658 -149367896 + Tigger2a DNA MER2_type 216 434 0 440 272 124 56 chr6 39911658 39912466 -149367088 + L1ME3 LINE L1 4411 5273 -873 912 305 37 16 chr6 39912467 39913056 -149366498 + L1ME3 LINE L1 5305 5905 -257 254 28 0 28 chr6 39913730 39913766 -149365788 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 472 68 14 14 chr6 39915646 39915720 -149363834 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 2404 65 0 3 chr6 39916167 39916460 -149363094 + AluY SINE Alu 1 292 -19 749 159 43 7 chr6 39916783 39916921 -149362633 + FLAM_C SINE Alu 1 143 0 948 195 0 0 chr6 39916936 39917116 -149362438 + AluJb SINE Alu 129 308 0 611 266 114 6 chr6 39917699 39918083 -149361471 - LTR16C LTR ERVL -4 487 37 1882 164 43 8 chr6 39918329 39918701 -149360853 - MLT1B LTR MaLR 0 390 6 1322 158 23 83 chr6 39919025 39919373 -149360181 - L1MD1 LINE L1 0 6242 5916 2145 123 10 0 chr6 39919401 39919709 -149359845 - AluSx SINE Alu -1 311 1 434 216 43 0 chr6 39919713 39919829 -149359725 - L1MDa LINE L1 -1031 5509 5389 * 522 167 0 0 chr6 39919828 39919918 -149359636 - AluJ/FRAM SINE Alu -3 309 220 3405 150 26 86 chr6 39919918 39920397 -149359157 - L1MD1 LINE L1 -336 5906 5400 2246 108 7 0 chr6 39920397 39920693 -149358861 - AluSp SINE Alu -15 298 1 3405 150 26 86 chr6 39920693 39921243 -149358311 - L1MD1 LINE L1 -842 5400 4932 1514 151 8 4 chr6 39921243 39921482 -149358072 - AluJo SINE Alu -15 297 58 1074 222 6 88 chr6 39921482 39921834 -149357720 - L1MDa LINE L1 -1145 5395 5073 2663 39 0 10 chr6 39923199 39923507 -149356047 + AluY SINE Alu 7 311 0 29 0 0 0 chr6 39923701 39923730 -149355824 + AT_rich Low_complexity Low_complexity 1 29 0 495 56 0 0 chr6 39924157 39924229 -149355325 + Alu SINE Alu 241 312 0 8307 202 72 59 chr6 39926152 39926482 -149353072 - L1MDa LINE L1 -1455 5085 4761 2610 49 20 0 chr6 39926482 39926787 -149352767 + AluY SINE Alu 1 311 0 8307 202 72 59 chr6 39926787 39928099 -149351455 - L1MDa LINE L1 -1779 4761 3467 5818 62 8 0 chr6 39928099 39928828 -149350726 + L1PA10 LINE L1 5417 6151 -17 8307 202 72 59 chr6 39928828 39929145 -149350409 - L1MDa LINE L1 -3073 3467 3155 2199 112 30 7 chr6 39929145 39929267 -149350287 + AluSq SINE Alu 1 119 -194 351 0 0 0 chr6 39929267 39929306 -149350248 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2199 112 30 7 chr6 39929306 39929478 -149350076 + AluSq SINE Alu 119 302 -11 2665 66 28 0 chr6 39929488 39929850 -149349704 + L1PA13 LINE L1 5792 6163 0 8307 202 72 59 chr6 39929850 39930352 -149349202 - L1MDa LINE L1 -3393 3147 2653 2164 96 10 36 chr6 39930352 39930655 -149348899 - AluSc SINE Alu -13 296 2 8307 202 72 59 chr6 39930655 39932823 -149346731 - L1MDa LINE L1 -3887 2653 379 1322 167 9 17 chr6 39932823 39933056 -149346498 - AluJo SINE Alu -40 272 42 568 206 46 0 chr6 39933061 39933192 -149346362 - Charlie2 DNA MER1_type -871 1991 1855 495 207 117 27 chr6 39934896 39935084 -149344470 + LTR37B LTR ERV1 199 403 -65 192 77 0 0 chr6 39935327 39935353 -149344201 + (A)n Simple_repeat Simple_repeat 1 26 0 565 267 67 33 chr6 39935471 39935651 -149343903 - LTR67 LTR ERVL -366 191 6 438 192 0 64 chr6 39935711 39935824 -149343730 + MLT1H1 LTR MaLR 437 555 0 531 232 30 24 chr6 39935824 39935992 -149343562 - L1ME3 LINE L1 -251 5911 5743 514 281 15 10 chr6 39935989 39936185 -149343369 - L1MC4 LINE L1 -144 7898 7702 * 278 161 177 16 chr6 39936191 39936253 -149343301 + MLT1F1 LTR MaLR 495 566 -1 253 296 60 55 chr6 39936333 39936532 -149343022 - HERV16 LTR ERVL -4422 574 375 2616 129 43 0 chr6 39936839 39937235 -149342319 + MLT2D LTR ERVL 2 414 0 1112 159 14 59 chr6 39937927 39938147 -149341407 - AluJo SINE Alu -16 296 87 287 293 93 46 chr6 39938203 39938462 -149341092 - L1M4 LINE L1 -2095 4051 3781 195 139 0 0 chr6 39938462 39938498 -149341056 + (TTA)n Simple_repeat Simple_repeat 3 38 0 1664 135 0 39 chr6 39938503 39938762 -149340792 - AluJo SINE Alu -24 288 40 1034 284 39 46 chr6 39938762 39939550 -149340004 - L1M4 LINE L1 -2359 3787 3005 557 211 0 0 chr6 39939629 39939733 -149339821 - AluJb SINE Alu -19 293 190 1854 154 43 0 chr6 39939858 39940157 -149339397 - AluJb SINE Alu 0 312 1 444 235 97 77 chr6 39940398 39940594 -149338960 + MER63A DNA MER1_type 10 209 -1 2293 84 27 3 chr6 39940815 39941113 -149338441 - AluSq SINE Alu -8 305 1 443 280 58 78 chr6 39941132 39941578 -149337976 - L1ME LINE L1 -5583 487 51 200 261 77 0 chr6 39941778 39941843 -149337711 - MIR3 SINE MIR -12 196 127 270 292 133 9 chr6 39942054 39942167 -149337387 + MIR SINE MIR 48 174 -88 2026 134 3 7 chr6 39942185 39942483 -149337071 - AluJo SINE Alu 0 312 16 381 272 152 38 chr6 39943348 39943532 -149336022 + MER63A DNA MER1_type 2 206 -4 1803 162 0 53 chr6 39943547 39943868 -149335686 - AluJb SINE Alu -7 305 2 268 278 0 111 chr6 39943886 39944030 -149335524 - MER94 DNA DNA -4 130 3 267 177 32 0 chr6 39945024 39945086 -149334468 - MIR SINE MIR -79 183 120 2139 122 10 3 chr6 39945400 39945703 -149333851 - AluSx SINE Alu -7 305 1 293 192 192 8 chr6 39946493 39946613 -149332941 - MIR3 SINE MIR -4 204 63 465 241 154 25 chr6 39947255 39947417 -149332137 - MIR3 SINE MIR -24 184 2 294 87 0 0 chr6 39950648 39950694 -149328860 + (TC)n Simple_repeat Simple_repeat 2 47 0 180 0 0 0 chr6 39950694 39950714 -149328840 + (CA)n Simple_repeat Simple_repeat 1 20 0 441 219 48 70 chr6 39950831 39951018 -149328536 - MIR3 SINE MIR -5 203 21 231 114 0 0 chr6 39952815 39952850 -149326704 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2309 64 0 34 chr6 39952866 39953162 -149326392 - AluY SINE Alu -25 286 1 227 264 0 0 chr6 39955318 39955371 -149324183 + (TG)n Simple_repeat Simple_repeat 1 53 0 1959 162 10 0 chr6 39955776 39956084 -149323470 - AluJb SINE Alu -1 311 1 914 126 0 0 chr6 39956155 39956282 -149323272 - FLAM_C SINE Alu -16 127 1 506 288 34 39 chr6 39956318 39956523 -149323031 - MIR SINE MIR -56 206 3 272 285 109 0 chr6 39959104 39959252 -149320302 + MIR SINE MIR 44 205 -57 1695 100 0 0 chr6 39961164 39961384 -149318170 + AluSg/x SINE Alu 81 300 -12 2425 68 0 3 chr6 39963201 39963497 -149316057 - AluSq SINE Alu -18 295 1 22 0 0 0 chr6 39964137 39964159 -149315395 + AT_rich Low_complexity Low_complexity 1 22 0 332 164 0 60 chr6 39965637 39965704 -149313850 + MER96 DNA MER1_type? 2 64 -111 2160 145 31 0 chr6 39965825 39966149 -149313405 + MER7A DNA MER2_type 1 332 -14 297 170 19 0 chr6 39967596 39967649 -149311905 - L1M3 LINE L1 -376 5795 5742 5177 164 40 19 chr6 39967943 39968543 -149311011 - L1MB3 LINE L1 0 6183 5597 2197 130 72 20 chr6 39968543 39968889 -149310665 - THE1B LTR MaLR 0 364 1 5177 164 40 19 chr6 39968889 39969472 -149310082 - L1MB3 LINE L1 -586 5597 4986 1355 202 27 60 chr6 39970419 39970865 -149308689 - L1MC5 LINE L1 -48 7913 7483 180 77 0 0 chr6 39970865 39970891 -149308663 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 1493 212 57 46 chr6 39970915 39971372 -149308182 - L1MC5 LINE L1 -488 7473 7012 300 360 64 23 chr6 39971411 39971583 -149307971 - L2 LINE L2 -15 3257 3079 257 23 0 70 chr6 39973911 39973954 -149305600 + (GGGTG)n Simple_repeat Simple_repeat 5 44 0 421 244 53 8 chr6 39974072 39974203 -149305351 - L1ME4a LINE L1 -23 6098 5962 894 239 74 8 chr6 39974361 39974604 -149304950 - MIR SINE MIR -2 260 2 260 327 94 78 chr6 39974767 39975128 -149304426 + L2 LINE L2 2906 3272 0 193 220 294 28 chr6 39975655 39975764 -149303790 - MIR3 SINE MIR -10 198 61 449 299 43 27 chr6 39976471 39976658 -149302896 - MIR SINE MIR -7 255 66 317 235 12 0 chr6 39976660 39976741 -149302813 + L2 LINE L2 1756 1837 -1477 247 260 40 30 chr6 39976744 39976844 -149302710 - L1MC4a LINE L1 -1633 6175 6075 22 0 0 0 chr6 39976999 39977021 -149302533 + AT_rich Low_complexity Low_complexity 1 22 0 885 285 90 11 chr6 39977021 39977308 -149302246 - L1ME4a LINE L1 -1996 5812 5486 369 0 0 0 chr6 39977308 39977349 -149302205 + (TA)n Simple_repeat Simple_repeat 1 41 0 885 285 90 11 chr6 39977349 39977440 -149302114 - L1ME4a LINE L1 -2322 5486 5404 24 67 0 0 chr6 39977813 39977858 -149301696 + AT_rich Low_complexity Low_complexity 1 45 0 276 309 104 30 chr6 39977944 39978378 -149301176 + L1M4 LINE L1 2135 2600 -3546 216 0 0 0 chr6 39979022 39979046 -149300508 + (A)n Simple_repeat Simple_repeat 1 24 0 2270 113 0 0 chr6 39979257 39979557 -149299997 + AluSx SINE Alu 1 300 -12 1831 139 33 0 chr6 39979644 39979942 -149299612 + AluJo SINE Alu 1 307 0 324 279 75 0 chr6 39979975 39980136 -149299418 + L1P LINE L1 3634 3806 -2340 337 212 162 10 chr6 39981554 39981653 -149297901 + MIR SINE MIR 72 185 -77 629 181 32 0 chr6 39983194 39983323 -149296231 - MLT1A1 LTR MaLR 0 457 236 204 40 0 0 chr6 39983671 39983696 -149295858 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1386 207 4 22 chr6 39983696 39983971 -149295583 - AluJo SINE Alu -32 280 11 776 173 73 0 chr6 39983980 39984130 -149295424 - MLT1A1 LTR MaLR -204 161 1 1831 139 24 0 chr6 39984250 39984544 -149295010 - L1MA6 LINE L1 -224 6076 5776 729 109 0 0 chr6 39984544 39984643 -149294911 + L1MA6 LINE L1 6195 6295 -5 625 151 63 32 chr6 39985879 39986005 -149293549 - LTR42 LTR ERVL -340 155 26 208 328 17 0 chr6 39986659 39986717 -149292837 + L2 LINE L2 3001 3059 -213 228 270 113 50 chr6 39989688 39989847 -149289707 - L1ME3A LINE L1 -37 6133 5965 1497 196 43 96 chr6 39989917 39990428 -149289126 - L1MC5 LINE L1 -436 7525 7042 1390 97 0 5 chr6 39990429 39990614 -149288940 + AluSc SINE Alu 106 289 -20 5517 206 46 24 chr6 39991006 39992374 -149287180 + Charlie1a DNA MER1_type 3 1439 -16 1768 205 55 3 chr6 39992452 39992799 -149286755 - MLT1A1 LTR MaLR 0 365 1 327 320 128 27 chr6 39992812 39993031 -149286523 - L1M4c LINE L1 -4732 1652 1412 18489 190 30 15 chr6 39993038 39995763 -149283791 + L1PA13 LINE L1 1 2683 -4114 2877 10 0 0 chr6 39995763 39996073 -149283481 + AluYa5 SINE Alu 1 310 -1 18489 190 30 15 chr6 39996073 39997421 -149282133 + L1PA13 LINE L1 2683 4189 -2608 230 0 33 0 chr6 39997421 39997451 -149282103 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 18489 190 30 15 chr6 39997451 39998600 -149280954 + L1PA13 LINE L1 4189 5319 -1478 2387 176 71 6 chr6 39998589 39999429 -149280125 + L1MD1 LINE L1 5350 6239 -3 * 493 215 96 7 chr6 39999525 39999660 -149279894 - L1M4 LINE L1 -1008 5138 4992 * 1122 205 54 8 chr6 39999654 39999913 -149279641 - L1M4 LINE L1 -1946 4200 3930 2295 103 0 3 chr6 40000973 40001274 -149278280 + AluY SINE Alu 12 311 0 42 48 0 0 chr6 40001287 40001350 -149278204 + AT_rich Low_complexity Low_complexity 1 63 0 1042 218 159 37 chr6 40001382 40001708 -149277846 + Tigger5 DNA MER2_type 1 2323 0 366 366 0 7 chr6 40001788 40001930 -149277624 - MIR SINE MIR -114 148 8 2208 183 58 44 chr6 40001944 40002053 -149277501 - MLT1D LTR MaLR 0 505 399 1202 261 101 10 chr6 40002053 40002451 -149277103 + MER57B LTR ERV1 1 434 0 2208 183 58 44 chr6 40002451 40002839 -149276715 - MLT1D LTR MaLR -106 399 1 346 347 66 26 chr6 40002960 40003338 -149276216 + L2 LINE L2 2459 2851 -463 218 289 60 12 chr6 40004794 40004877 -149274677 + MIR SINE MIR 1 87 -175 691 167 42 22 chr6 40004907 40005122 -149274432 - AluJb SINE Alu -18 294 4 192 238 0 0 chr6 40005132 40005174 -149274380 + MIR SINE MIR 205 246 -16 25 0 0 0 chr6 40005174 40005199 -149274355 + AT_rich Low_complexity Low_complexity 1 25 0 1617 98 129 20 chr6 40005329 40005614 -149273940 + AluSx SINE Alu 1 313 0 248 226 98 98 chr6 40005775 40005939 -149273615 - L1MCc LINE L1 -5997 426 263 258 300 50 17 chr6 40006018 40006138 -149273416 - L1MCc LINE L1 -6283 140 17 3960 188 71 25 chr6 40008356 40009132 -149270422 + MER21B LTR ERV1 1 812 -51 675 163 0 67 chr6 40009202 40009337 -149270217 + FLAM_C SINE Alu 12 137 -6 1754 151 24 17 chr6 40010448 40010740 -149268814 - AluJo SINE Alu -18 294 1 381 284 115 0 chr6 40011034 40011182 -149268372 + L2 LINE L2 2825 2989 -324 275 317 41 16 chr6 40011205 40011328 -149268226 + L2 LINE L2 3179 3304 -9 352 235 107 7 chr6 40012190 40012339 -149267215 + MIR SINE MIR 74 237 -25 33 41 0 41 chr6 40012376 40012415 -149267139 + AT_rich Low_complexity Low_complexity 1 37 -33 6436 69 17 4 chr6 40012415 40014201 -149265353 - L1PA11 LINE L1 -5 6169 4368 33 41 0 41 chr6 40014201 40014234 -149265320 + AT_rich Low_complexity Low_complexity 37 70 0 194 330 70 35 chr6 40014604 40014719 -149264835 - MIR SINE MIR -60 202 84 1146 66 0 0 chr6 40015087 40015223 -149264331 - AluSq/x SINE Alu -177 136 1 225 220 9 73 chr6 40016381 40016490 -149263064 + L1MCa LINE L1 1400 1501 -4925 247 213 180 7 chr6 40016596 40016746 -149262808 + L1M4 LINE L1 5224 5399 -747 389 250 87 72 chr6 40017112 40017320 -149262234 - L2 LINE L2 0 3313 3103 365 262 37 30 chr6 40018296 40018460 -149261094 + L1MCa LINE L1 2428 2592 -3834 4155 207 5 18 chr6 40018520 40019370 -149260184 - L1P LINE L1 -3848 2298 1460 4540 93 10 0 chr6 40019370 40019971 -149259583 + L1PA13 LINE L1 5557 6163 0 882 125 0 0 chr6 40020061 40020181 -149259373 - MSTB LTR MaLR -299 127 8 692 225 19 43 chr6 40020191 40020400 -149259154 + L1MDa LINE L1 2190 2393 -4147 1367 203 152 51 chr6 40020926 40021315 -149258239 + MSTC LTR MaLR 1 428 0 4837 238 98 51 chr6 40021317 40022392 -149257162 + MSTC-int LTR MaLR 2 1184 -551 8245 60 2 0 chr6 40022392 40023359 -149256195 + LTR5 LTR ERVK 1 969 0 4837 238 98 51 chr6 40023359 40023939 -149255615 + MSTC-int LTR MaLR 1184 1735 0 1410 191 116 40 chr6 40023939 40024337 -149255217 + MSTC LTR MaLR 1 428 0 2078 106 0 7 chr6 40024363 40024638 -149254916 + AluSx SINE Alu 26 298 -14 341 250 75 8 chr6 40025095 40025215 -149254339 + MLT1E3-int LTR MaLR 1603 1730 -5 1796 200 154 85 chr6 40025231 40025326 -149254228 + MLT1E3 LTR MaLR 4 91 -533 3031 108 43 79 chr6 40025326 40025856 -149253698 - MER9 LTR ERVK 0 511 1 1796 200 154 85 chr6 40025856 40026369 -149253185 + MLT1E3 LTR MaLR 91 624 0 27 49 0 0 chr6 40026547 40026588 -149252966 + AT_rich Low_complexity Low_complexity 1 41 0 1847 118 17 3 chr6 40026588 40026885 -149252669 - LTR43 LTR ERV1 0 602 302 1579 125 30 106 chr6 40027583 40027950 -149251604 + MER44D DNA MER2_type 1 609 0 292 315 31 31 chr6 40029200 40029362 -149250192 - MLT1J2 LTR MaLR 0 450 289 1398 166 107 75 chr6 40029975 40030267 -149249287 + MER4A LTR ERV1 1 182 -283 2178 114 0 25 chr6 40030267 40030582 -149248972 - AluSx SINE Alu -5 307 1 1398 166 107 75 chr6 40030582 40030854 -149248700 + MER4A LTR ERV1 182 444 -21 1508 168 9 87 chr6 40031002 40031336 -149248218 + MER70B LTR ERVL 271 578 0 649 273 40 4 chr6 40031338 40031591 -149247963 + L1MCa LINE L1 932 1193 -5233 1213 205 51 18 chr6 40031608 40031912 -149247642 + AluJo SINE Alu 2 314 0 310 250 11 23 chr6 40031937 40032025 -149247529 - L1MCa LINE L1 -5202 1224 1138 680 175 24 36 chr6 40032080 40032246 -149247308 - L1MD2 LINE L1 -13 6346 6183 1365 184 13 10 chr6 40032248 40032552 -149247002 + L1M4 LINE L1 4862 5166 -980 1544 138 0 46 chr6 40032552 40032835 -149246719 + L1PB3 LINE L1 5882 6151 -3 25 0 0 0 chr6 40032835 40032860 -149246694 + AT_rich Low_complexity Low_complexity 1 25 0 460 319 43 0 chr6 40032860 40032998 -149246556 - MIR SINE MIR -15 247 104 235 186 0 0 chr6 40033027 40033070 -149246484 - L2 LINE L2 -661 2653 2611 858 198 68 38 chr6 40033143 40033458 -149246096 + MER4C LTR ERV1 276 465 0 1107 120 83 26 chr6 40133495 40133687 -149145867 - AluSx SINE Alu -109 203 1 765 196 0 0 chr6 40133693 40133826 -149145728 - FLAM_C SINE Alu 0 133 1 859 138 172 119 chr6 40133846 40134070 -149145484 - L1MA7 LINE L1 -2 6289 6038 1685 165 39 0 chr6 40134070 40134355 -149145199 + AluJo SINE Alu 1 296 -16 859 138 172 119 chr6 40134355 40134484 -149145070 - L1MA7 LINE L1 -253 6038 5917 1787 74 0 29 chr6 40134492 40134736 -149144818 + AluY SINE Alu 64 300 -11 1703 153 0 0 chr6 40135165 40135426 -149144128 + AluSx SINE Alu 36 296 -16 577 122 12 0 chr6 40136158 40136240 -149143314 + AluJ/FLAM SINE Alu 2 84 -228 319 325 73 7 chr6 40136292 40136443 -149143111 + MIR3 SINE MIR 21 181 -27 2039 115 11 0 chr6 40136956 40137243 -149142311 - AluSx SINE Alu -22 290 1 2237 70 10 10 chr6 40137848 40138170 -149141384 + AluY SINE Alu 1 311 0 1925 132 0 38 chr6 40138216 40138534 -149141020 + AluSx SINE Alu 1 306 -6 2178 82 0 0 chr6 40138570 40138850 -149140704 + AluSq SINE Alu 1 280 -33 396 0 0 0 chr6 40138850 40138894 -149140660 + (CA)n Simple_repeat Simple_repeat 1 44 0 844 150 0 0 chr6 40139078 40139205 -149140349 + FLAM_C SINE Alu 1 127 -16 1978 151 0 0 chr6 40139222 40139527 -149140027 + AluSx SINE Alu 1 305 -7 1838 105 124 0 chr6 40139565 40139831 -149139723 + AluSg SINE Alu 2 300 0 2274 98 3 0 chr6 40139846 40140152 -149139402 + AluSc SINE Alu 1 307 -2 2099 102 17 0 chr6 40141139 40141433 -149138121 - AluSx SINE Alu -13 299 1 379 220 38 30 chr6 40141466 40141546 -149138008 - L1MC5 LINE L1 -58 7903 7820 2209 125 0 0 chr6 40141546 40141858 -149137696 - AluSx SINE Alu 0 312 1 379 220 38 30 chr6 40141858 40141909 -149137645 - L1MC5 LINE L1 -141 7820 7771 838 256 11 5 chr6 40141913 40142104 -149137450 - AluJo SINE Alu -5 307 116 264 156 0 0 chr6 40142104 40142149 -149137405 - L1MC5 LINE L1 -194 7767 7723 2289 87 0 7 chr6 40142151 40142460 -149137094 - AluSc SINE Alu -2 307 1 340 197 0 0 chr6 40142568 40142629 -149136925 - AluS SINE Alu -239 61 1 2011 124 3 0 chr6 40142655 40142946 -149136608 + AluSg SINE Alu 1 292 -18 1214 218 66 3 chr6 40143286 40143575 -149135979 + AluJo SINE Alu 1 307 -5 365 213 88 17 chr6 40143609 40143713 -149135841 + MER5A DNA MER1_type 69 186 -3 2033 130 0 0 chr6 40143839 40144132 -149135422 + AluSg SINE Alu 1 293 -17 1878 149 7 0 chr6 40144185 40144481 -149135073 + AluSx SINE Alu 1 298 -14 554 233 15 53 chr6 40144496 40144629 -149134925 - FLAM_A SINE Alu -5 128 1 5272 72 33 53 chr6 40144661 40145624 -149133930 + SVA Other Other 25 866 -592 2119 99 34 0 chr6 40146193 40146487 -149133067 - AluSx SINE Alu -8 304 1 427 298 51 6 chr6 40147438 40147596 -149131958 - MIR3 SINE MIR -29 179 15 181 283 123 28 chr6 40147849 40147955 -149131599 + L3 LINE CR1 1353 1468 -109 220 289 39 70 chr6 40148664 40148761 -149130793 + L2 LINE L2 3189 3283 -30 1903 160 0 3 chr6 40148761 40149073 -149130481 + AluSx SINE Alu 1 311 -1 220 289 39 70 chr6 40149073 40149103 -149130451 + L2 LINE L2 3283 3312 -1 2172 131 45 70 chr6 40149165 40149608 -149129946 + MSTB1 LTR MaLR 1 432 0 1976 128 0 17 chr6 40149636 40149932 -149129622 + AluSg SINE Alu 1 291 -19 387 0 0 0 chr6 40149934 40149977 -149129577 + (TG)n Simple_repeat Simple_repeat 2 44 0 253 291 55 9 chr6 40150205 40150315 -149129239 - MIR SINE MIR -56 206 92 2274 95 0 0 chr6 40150331 40150635 -149128919 - AluSx SINE Alu -8 304 1 183 100 0 0 chr6 40150709 40150739 -149128815 + (TCC)n Simple_repeat Simple_repeat 2 31 0 283 200 0 29 chr6 40151726 40151796 -149127758 + MIR SINE MIR 189 256 -6 252 245 223 0 chr6 40152059 40152153 -149127401 - L2 LINE L2 0 3313 3199 423 38 0 0 chr6 40152155 40152208 -149127346 + (TG)n Simple_repeat Simple_repeat 2 54 0 189 0 0 0 chr6 40152243 40152264 -149127290 + (TA)n Simple_repeat Simple_repeat 2 22 0 2220 92 3 10 chr6 40153533 40153871 -149125683 - AluSp SINE Alu 0 313 1 834 164 8 0 chr6 40153871 40154005 -149125549 - AluJo SINE Alu -177 135 1 1024 228 40 83 chr6 40154047 40154369 -149125185 - L1MC5 LINE L1 -436 7525 7191 2126 81 3 11 chr6 40154369 40154681 -149124873 - AluSc SINE Alu 0 310 1 1024 228 40 83 chr6 40154681 40154851 -149124703 - L1MC5 LINE L1 -770 7191 7015 2292 74 0 20 chr6 40154851 40155148 -149124406 - AluSc SINE Alu -18 291 1 1024 228 40 83 chr6 40155148 40155163 -149124391 - L1MC5 LINE L1 -946 7015 7001 548 140 50 10 chr6 40155163 40155263 -149124291 - U6 snRNA snRNA -3 104 1 1024 228 40 83 chr6 40155263 40155329 -149124225 - L1MC5 LINE L1 -960 7001 6973 2182 75 0 0 chr6 40155334 40155653 -149123901 - AluY SINE Alu 0 319 1 260 370 0 43 chr6 40155793 40155875 -149123679 + L2 LINE L2 3102 3177 -95 2082 118 16 3 chr6 40155875 40156180 -149123374 - AluSx SINE Alu -3 309 1 260 370 0 43 chr6 40156180 40156235 -149123319 + L2 LINE L2 3177 3233 -39 189 365 130 0 chr6 40159194 40159309 -149120245 - L2 LINE L2 -4 3268 3139 1785 45 0 45 chr6 40163066 40163308 -149116246 - AluY SINE Alu -80 231 1 589 39 90 0 chr6 40163308 40163386 -149116168 - MER30 DNA MER1_type -145 85 1 723 316 38 45 chr6 40163405 40163823 -149115731 - L1MC/D LINE L1 -2139 5669 5255 265 257 29 0 chr6 40164077 40164147 -149115407 - L2 LINE L2 0 3313 3242 2171 88 0 10 chr6 40164200 40164522 -149115032 - AluY SINE Alu 0 311 1 2068 119 16 0 chr6 40164524 40164827 -149114727 - AluSg SINE Alu -2 308 1 2244 82 0 25 chr6 40164893 40165210 -149114344 - AluY SINE Alu -2 309 1 827 113 17 0 chr6 40165237 40165352 -149114202 - FLAM_C SINE Alu -26 117 1 2035 121 7 7 chr6 40165386 40165684 -149113870 - AluSx SINE Alu -14 298 1 1351 188 57 25 chr6 40165794 40166102 -149113452 - AluJo SINE Alu 0 302 2 2113 128 3 0 chr6 40166351 40166656 -149112898 - AluSx SINE Alu 0 312 7 2065 142 3 0 chr6 40166757 40167068 -149112486 - AluSx SINE Alu 0 312 1 980 83 0 8 chr6 40167070 40167203 -149112351 - AluSq/x SINE Alu -181 132 1 2164 108 0 3 chr6 40169086 40169383 -149110171 + AluSg SINE Alu 1 296 -14 634 222 0 0 chr6 40169389 40169506 -149110048 - FLAM_C SINE Alu -25 118 2 1937 142 0 16 chr6 40169516 40169825 -149109729 - AluSx SINE Alu -8 304 1 438 252 87 8 chr6 40171674 40171801 -149107753 + MER91A DNA MER1_type 47 183 -13 665 37 0 0 chr6 40174142 40174223 -149105331 + HY3 scRNA scRNA 1 81 -20 1831 141 16 10 chr6 40174241 40174546 -149105008 + AluJb SINE Alu 1 307 -5 356 314 43 5 chr6 40177266 40177451 -149102103 - L2 LINE L2 -411 2903 2712 207 182 212 0 chr6 40177866 40177932 -149101622 - MIR SINE MIR -99 109 30 554 171 205 0 chr6 40178091 40178208 -149101346 - FLAM_C SINE Alu -1 142 2 2337 93 3 0 chr6 40178865 40179177 -149100377 - AluSq SINE Alu 0 313 1 2048 111 0 0 chr6 40179180 40179480 -149100074 - AluSx SINE Alu 0 305 6 2367 76 3 13 chr6 40180151 40180494 -149099060 + AluSp SINE Alu 1 340 0 1776 138 0 35 chr6 40180602 40180914 -149098640 + AluJb SINE Alu 3 303 -9 2595 39 3 0 chr6 40181030 40181340 -149098214 - AluY SINE Alu 0 311 1 307 290 0 30 chr6 40181458 40181558 -149097996 + MIR SINE MIR 51 147 -115 798 101 70 8 chr6 40181585 40181714 -149097840 - LTR7 LTR ERV1 -313 137 1 349 234 105 8 chr6 40181875 40181999 -149097555 - MIR SINE MIR -4 258 123 1818 128 30 37 chr6 40182009 40182307 -149097247 - AluJb SINE Alu 0 312 17 267 79 0 0 chr6 40182413 40182451 -149097103 + (CCCTG)n Simple_repeat Simple_repeat 1 38 0 1701 100 30 118 chr6 40182462 40182791 -149096763 - AluSq SINE Alu -13 300 1 1880 130 10 17 chr6 40184193 40184494 -149095060 - AluSq SINE Alu -14 299 1 789 167 24 0 chr6 40184596 40184722 -149094832 - FLAM_C SINE Alu -13 130 2 2115 113 0 28 chr6 40184881 40185200 -149094354 - AluSg SINE Alu 0 310 1 308 266 106 11 chr6 40185924 40186018 -149093536 + L1MC4 LINE L1 6599 6701 -1341 529 136 239 7 chr6 40186025 40186180 -149093374 - L1ME3 LINE L1 -2 6160 5970 1708 92 8 4 chr6 40187583 40187821 -149091733 - AluSq SINE Alu 0 313 75 1664 154 32 4 chr6 40188210 40188489 -149091065 + AluJo SINE Alu 7 293 -19 212 283 0 0 chr6 40189347 40189400 -149090154 + G-rich Low_complexity Low_complexity 1 53 0 1058 83 89 0 chr6 40189866 40190023 -149089531 - AluJb SINE Alu -6 306 136 2373 75 0 0 chr6 40190811 40191116 -149088438 - AluSg SINE Alu -5 305 1 692 113 0 0 chr6 40191690 40191787 -149087767 - AluJb SINE Alu -5 307 211 274 157 78 0 chr6 40191787 40191838 -149087716 - L1MB5 LINE L1 -78 6096 6042 2112 110 7 3 chr6 40191848 40192148 -149087406 - AluSq SINE Alu -12 301 1 2005 94 3 49 chr6 40192155 40192463 -149087091 - AluSx SINE Alu -18 294 1 1936 131 24 0 chr6 40193066 40193364 -149086190 - AluSx SINE Alu -7 305 1 1883 66 8 4 chr6 40197146 40197389 -149082165 - AluSg SINE Alu -13 297 54 781 62 0 0 chr6 40197389 40197486 -149082068 - AluSg SINE Alu -212 98 2 1447 124 5 0 chr6 40197489 40197706 -149081848 - AluSg/x SINE Alu -9 301 84 201 74 0 0 chr6 40197907 40197934 -149081620 + (A)n Simple_repeat Simple_repeat 1 27 0 2062 80 3 53 chr6 40198467 40198769 -149080785 + AluSp SINE Alu 7 293 -20 2325 97 3 0 chr6 40199099 40199410 -149080144 - AluSx SINE Alu 0 312 1 2184 114 3 0 chr6 40199791 40200098 -149079456 + AluSx SINE Alu 1 308 -4 1664 154 32 4 chr6 40200407 40200686 -149078868 + AluJo SINE Alu 7 293 -19 1067 82 89 0 chr6 40202061 40202219 -149077335 - AluJb SINE Alu -5 307 136 2373 75 0 0 chr6 40203006 40203311 -149076243 - AluSg SINE Alu -5 305 1 692 113 0 0 chr6 40203885 40203982 -149075572 - AluJb SINE Alu -5 307 211 274 157 78 0 chr6 40203982 40204033 -149075521 - L1MB5 LINE L1 -78 6096 6042 2097 113 7 3 chr6 40204043 40204343 -149075211 - AluSq SINE Alu -12 301 1 2005 94 3 49 chr6 40204350 40204658 -149074896 - AluSx SINE Alu -18 294 1 1936 131 24 0 chr6 40205261 40205559 -149073995 - AluSx SINE Alu -7 305 1 1341 72 6 0 chr6 40209149 40209329 -149070225 - AluY SINE Alu 0 311 131 1535 65 0 56 chr6 40209329 40209560 -149069994 - AluY SINE Alu -93 218 1 1781 173 90 27 chr6 40209973 40210079 -149069475 + L1MB2 LINE L1 5660 5758 -413 1991 129 0 13 chr6 40210079 40210381 -149069173 + AluSx SINE Alu 1 298 -14 1781 173 90 27 chr6 40210381 40210564 -149068990 + L1MB2 LINE L1 5758 5928 -243 1489 191 10 13 chr6 40210564 40210867 -149068687 + AluJb SINE Alu 1 302 -10 1781 173 90 27 chr6 40210867 40211056 -149068498 + L1MB2 LINE L1 5928 6169 -2 1549 167 7 20 chr6 40211065 40211214 -149068340 + AluJo SINE Alu 1 146 -166 1980 76 52 31 chr6 40211214 40211504 -149068050 + AluSx SINE Alu 1 296 -16 1549 167 7 20 chr6 40211504 40211654 -149067900 + AluJo SINE Alu 146 296 -16 387 0 0 0 chr6 40214091 40214134 -149065420 + (TG)n Simple_repeat Simple_repeat 2 44 0 2257 63 0 7 chr6 40214134 40214420 -149065134 - AluY SINE Alu -27 284 1 2228 102 10 0 chr6 40214669 40214974 -149064580 - AluSq SINE Alu -5 308 1 277 138 0 0 chr6 40215063 40215115 -149064439 + Alu SINE Alu 2 37 -271 2142 99 0 0 chr6 40215222 40215506 -149064048 + AluSc SINE Alu 1 284 -25 781 177 48 7 chr6 40215821 40215968 -149063586 - FRAM SINE Alu -4 172 20 1634 125 156 0 chr6 40215975 40216231 -149063323 - AluSq SINE Alu -7 296 1 2088 113 3 0 chr6 40216232 40216534 -149063020 - AluSx SINE Alu -9 303 1 29 0 0 0 chr6 40216572 40216601 -149062953 + AT_rich Low_complexity Low_complexity 1 29 0 889 197 0 0 chr6 40217884 40218036 -149061518 + FRAM SINE Alu 4 155 -11 2134 102 7 0 chr6 40218174 40218467 -149061087 + AluSg SINE Alu 1 295 -15 1675 167 31 14 chr6 40218477 40218764 -149060790 + AluJb SINE Alu 1 292 -20 2437 80 0 0 chr6 40218771 40219082 -149060472 + AluY SINE Alu 1 311 0 818 75 0 0 chr6 40219094 40219201 -149060353 + AluSc SINE Alu 1 107 -202 350 298 118 6 chr6 40219278 40219439 -149060115 - MIR SINE MIR -30 232 54 2069 130 0 0 chr6 40219450 40219751 -149059803 - AluSg1 SINE Alu -3 306 6 644 215 0 44 chr6 40219779 40219914 -149059640 - FLAM_C SINE Alu -13 130 2 2064 125 3 0 chr6 40219957 40220253 -149059301 + AluSx SINE Alu 1 297 -15 439 130 0 14 chr6 40220341 40220410 -149059144 - AluJo SINE Alu -19 293 226 1008 183 33 0 chr6 40220410 40220590 -149058964 - AluJo SINE Alu -126 186 1 2034 99 0 7 chr6 40220896 40221206 -149058348 - AluSg SINE Alu 0 308 1 1951 99 46 30 chr6 40221219 40221522 -149058032 - AluSc SINE Alu -1 308 1 2119 129 0 0 chr6 40221527 40221837 -149057717 - AluSg SINE Alu 0 310 1 802 145 0 16 chr6 40221847 40221971 -149057583 - AluJo SINE Alu -178 134 13 2094 125 0 3 chr6 40222020 40222324 -149057230 - AluSx SINE Alu -9 303 1 1078 163 16 0 chr6 40222642 40222826 -149056728 - AluSg/x SINE Alu -6 304 118 25 0 0 0 chr6 40222826 40222851 -149056703 + AT_rich Low_complexity Low_complexity 1 25 0 1409 126 5 14 chr6 40222851 40222930 -149056624 - AluSx SINE Alu -99 213 135 2393 70 3 0 chr6 40222930 40223231 -149056323 - AluY SINE Alu -9 302 1 1409 126 5 14 chr6 40223231 40223366 -149056188 - AluSx SINE Alu -177 135 1 2216 95 0 3 chr6 40223476 40223782 -149055772 - AluSg SINE Alu -5 305 1 628 209 26 0 chr6 40223810 40223925 -149055629 - FLAM_C SINE Alu -15 118 1 490 181 0 86 chr6 40224115 40224181 -149055373 + AluJo SINE Alu 77 130 -182 2272 79 0 0 chr6 40224181 40224471 -149055083 + AluY SINE Alu 1 290 -21 490 181 0 86 chr6 40224471 40224520 -149055034 + AluJo SINE Alu 130 182 -130 526 177 306 0 chr6 40224474 40224598 -149054956 + AluJo/FRAM SINE Alu 137 298 -4 2099 124 10 0 chr6 40224801 40225108 -149054446 + AluSx SINE Alu 1 310 -2 2073 91 37 7 chr6 40225465 40225763 -149053791 + AluSq SINE Alu 1 307 -6 184 147 0 29 chr6 40226905 40226939 -149052615 - MIR3 SINE MIR -31 177 145 1011 95 19 6 chr6 40226940 40227098 -149052456 - AluSg/x SINE Alu -19 293 134 2060 110 7 19 chr6 40227098 40227293 -149052261 - AluSx SINE Alu -7 305 114 1831 92 4 0 chr6 40227293 40227543 -149052011 - AluSg1 SINE Alu -43 266 16 2060 110 7 19 chr6 40227543 40227656 -149051898 - AluSx SINE Alu -198 114 1 183 211 26 0 chr6 40227660 40227698 -149051856 - MIR SINE MIR -61 147 109 26 30 0 0 chr6 40227987 40228020 -149051534 + GC_rich Low_complexity Low_complexity 1 33 0 339 308 62 41 chr6 40229115 40229310 -149050244 + MIR SINE MIR 54 252 -10 303 358 47 5 chr6 40229697 40229711 -149049843 + L2 LINE L2 3080 3092 -221 1911 109 59 30 chr6 40229711 40230014 -149049540 - AluSx SINE Alu 0 312 1 303 358 47 5 chr6 40230014 40230189 -149049365 + L2 LINE L2 3092 3277 -36 1974 52 0 12 chr6 40230311 40230560 -149048994 - AluY SINE Alu -12 299 54 221 0 0 33 chr6 40232454 40232484 -149047070 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 715 185 8 8 chr6 40232484 40232603 -149046951 - AluJb SINE Alu -188 124 3 1010 143 0 19 chr6 40232672 40232833 -149046721 - AluSg/x SINE Alu -21 289 132 602 310 2 112 chr6 40232886 40233203 -149046351 - L1MC4a LINE L1 -1761 6047 5783 2438 83 0 0 chr6 40233203 40233516 -149046038 - AluSq SINE Alu 0 313 1 602 310 2 112 chr6 40233516 40233608 -149045946 - L1MC4a LINE L1 -2025 5783 5683 1016 115 25 0 chr6 40233608 40233765 -149045789 - MER30 DNA MER1_type 0 230 70 1735 118 45 21 chr6 40233910 40234199 -149045355 + AluSp SINE Alu 1 296 -17 1985 79 48 7 chr6 40234199 40234490 -149045064 + AluY SINE Alu 1 303 -8 1891 109 11 4 chr6 40234491 40234765 -149044789 + AluSc SINE Alu 2 277 -32 1702 141 10 21 chr6 40234845 40235135 -149044419 + AluY SINE Alu 7 293 -18 1034 198 75 4 chr6 40235341 40235568 -149043986 + AluSx SINE Alu 53 295 -17 1848 109 0 66 chr6 40235622 40235925 -149043629 + AluSq SINE Alu 1 283 -30 1833 117 20 37 chr6 40236067 40236366 -149043188 - AluSc SINE Alu -15 294 1 1839 154 83 0 chr6 40236668 40236993 -149042561 + L1PA16 LINE L1 5804 6155 -11 1258 155 9 122 chr6 40236993 40237139 -149042415 + AluJb SINE Alu 1 89 -223 1972 100 7 47 chr6 40237139 40237440 -149042114 - AluSx SINE Alu -19 293 5 1258 155 9 122 chr6 40237440 40237629 -149041925 + AluJb SINE Alu 89 298 -14 1553 134 161 8 chr6 40237631 40237892 -149041662 + AluSx SINE Alu 2 302 0 1801 133 31 0 chr6 40237903 40238189 -149041365 + AluSg SINE Alu 1 295 -15 231 127 73 18 chr6 40238208 40238262 -149041292 + AluSq/x SINE Alu 56 112 -191 1287 142 93 19 chr6 40238262 40238573 -149040981 + MSTA LTR MaLR 1 364 -64 768 121 14 71 chr6 40239368 40239509 -149040045 + AluSq/x SINE Alu 2 134 -179 1170 201 148 11 chr6 40239637 40239900 -149039654 + AluJb SINE Alu 3 301 -1 1457 104 46 8 chr6 40239969 40240209 -149039345 + AluSc SINE Alu 56 304 -5 618 202 34 0 chr6 40240211 40240330 -149039224 + AluJo/FRAM SINE Alu 180 302 -10 2060 88 24 3 chr6 40240330 40240625 -149038929 + AluY SINE Alu 1 301 -10 23 0 0 0 chr6 40241597 40241620 -149037934 + GC_rich Low_complexity Low_complexity 1 23 0 499 214 4 61 chr6 40242025 40242254 -149037300 + SVA Other Other 574 789 -597 6738 60 5 43 chr6 40242271 40243263 -149036291 + SVA Other Other 433 1386 0 615 209 26 40 chr6 40243270 40243463 -149036091 - LTR24B LTR ERV1 -40 595 374 4450 125 51 32 chr6 40243464 40244663 -149034891 - pTR5 LTR ERV1 -171 2267 743 1682 106 144 35 chr6 40244664 40245005 -149034549 - LTR24B LTR ERV1 -195 381 4 1804 128 3 35 chr6 40245336 40245625 -149033929 - AluJb SINE Alu -15 297 18 206 32 32 0 chr6 40245704 40245735 -149033819 + (CAA)n Simple_repeat Simple_repeat 1 32 0 315 56 0 74 chr6 40245789 40245843 -149033711 - Alu SINE Alu -5 303 257 233 321 151 20 chr6 40252216 40252515 -149027039 - L2 LINE L2 -824 2490 2153 326 346 13 38 chr6 40252765 40252924 -149026630 + MER5A DNA MER1_type 35 189 0 1909 132 17 0 chr6 40253001 40253297 -149026257 + AluJb SINE Alu 1 301 -11 1235 206 0 114 chr6 40253434 40253784 -149025770 + AluSx SINE Alu 1 310 -2 2099 114 0 7 chr6 40254193 40254499 -149025055 - AluSc SINE Alu -5 304 1 881 95 16 0 chr6 40254502 40254628 -149024926 - AluSq/x SINE Alu -180 132 5 1749 155 4 0 chr6 40254638 40254915 -149024639 - AluJo SINE Alu -22 290 13 1405 181 51 14 chr6 40255128 40255420 -149024134 - AluJo SINE Alu -9 303 1 23 0 0 0 chr6 40255828 40255851 -149023703 + AT_rich Low_complexity Low_complexity 1 23 0 437 176 0 24 chr6 40255858 40255943 -149023611 + AluJb SINE Alu 198 280 -32 2099 108 3 3 chr6 40256138 40256433 -149023121 + AluSg SINE Alu 1 295 -15 300 267 137 7 chr6 40256445 40256591 -149022963 - L1MEd LINE L1 -5004 1115 951 937 126 0 15 chr6 40256604 40256739 -149022815 - FLAM_C SINE Alu 0 133 1 1950 145 0 3 chr6 40256900 40257196 -149022358 - AluSx SINE Alu -17 295 1 448 102 0 0 chr6 40257405 40257464 -149022090 - AluSq/x SINE Alu -193 120 62 1459 256 35 14 chr6 40257464 40257890 -149021664 - L2 LINE L2 -466 2848 2414 2500 46 10 0 chr6 40258142 40258448 -149021106 + AluY SINE Alu 1 309 -2 618 241 0 0 chr6 40258647 40258763 -149020791 + FLAM_A SINE Alu 1 116 -17 1552 170 17 17 chr6 40258766 40259054 -149020500 - AluJb SINE Alu -18 294 7 1439 181 13 43 chr6 40259083 40259227 -149020327 + AluJb SINE Alu 1 148 -164 2332 64 7 3 chr6 40259227 40259523 -149020031 + AluY SINE Alu 1 297 -14 2260 101 0 0 chr6 40259523 40259819 -149019735 + AluY SINE Alu 1 296 -15 1439 181 13 43 chr6 40259819 40259976 -149019578 + AluJb SINE Alu 146 294 -18 805 113 52 0 chr6 40259981 40260096 -149019458 + AluSq/x SINE Alu 1 121 -191 1063 123 13 0 chr6 40260228 40260382 -149019172 - AluSg/x SINE Alu -23 287 132 189 0 0 0 chr6 40260383 40260404 -149019150 + (TATG)n Simple_repeat Simple_repeat 2 22 0 2079 107 0 14 chr6 40260404 40260694 -149018860 - AluSq SINE Alu -27 286 1 272 85 0 0 chr6 40260799 40260846 -149018708 + Tigger7 DNA MER2_type 2321 2367 -120 1291 152 100 15 chr6 40260907 40261176 -149018378 + LTR23 LTR ERV1 1 292 -145 22 35 0 0 chr6 40261191 40261220 -149018334 + AT_rich Low_complexity Low_complexity 1 29 0 269 143 41 0 chr6 40261229 40261278 -149018276 - MER66A LTR ERV1 -144 334 284 792 185 15 0 chr6 40261339 40261469 -149018085 + FLAM_C SINE Alu 1 132 -1 629 145 35 35 chr6 40261476 40261621 -149017933 + LTR23 LTR ERV1 293 437 0 237 306 96 19 chr6 40261849 40262006 -149017548 + L2 LINE L2 3145 3313 0 1709 110 0 30 chr6 40263183 40263273 -149016281 + AluSx SINE Alu 48 139 -173 2089 105 10 10 chr6 40263273 40263578 -149015976 + AluSq SINE Alu 1 305 -8 1709 110 0 30 chr6 40263578 40263751 -149015803 + AluSx SINE Alu 139 303 -9 1516 160 70 72 chr6 40263751 40264104 -149015450 - L1MB3 LINE L1 -50 6133 5833 1385 171 49 31 chr6 40264104 40264390 -149015164 + AluJo SINE Alu 1 291 -21 1516 160 70 72 chr6 40264390 40264570 -149014984 - L1MB3 LINE L1 -350 5833 5654 2078 101 0 17 chr6 40265463 40265760 -149013794 - AluSx SINE Alu -20 292 1 885 261 77 34 chr6 40266083 40266475 -149013079 - L1MC5 LINE L1 -37 7924 7512 2226 81 7 10 chr6 40266475 40266772 -149012782 + AluSp SINE Alu 1 296 -17 885 261 77 34 chr6 40266772 40266796 -149012758 - L1MC5 LINE L1 -449 7512 7490 1446 125 13 9 chr6 40266815 40267059 -149012495 - AluSg/x SINE Alu 0 310 73 678 186 50 7 chr6 40267179 40267319 -149012235 - AluSq/x SINE Alu -165 147 2 1949 118 31 0 chr6 40267355 40267643 -149011911 + AluSq SINE Alu 3 299 -14 476 229 115 19 chr6 40267644 40267801 -149011753 - L1MC5 LINE L1 -478 7483 7312 245 286 27 54 chr6 40267804 40267951 -149011603 - L1MD3 LINE L1 -437 7558 7416 269 280 93 47 chr6 40267988 40268138 -149011416 - L1ME3A LINE L1 -220 5950 5794 444 161 0 0 chr6 40268334 40268415 -149011139 + GA-rich Low_complexity Low_complexity 2 82 0 377 331 70 0 chr6 40270336 40270478 -149009076 - L2 LINE L2 -3 3269 3118 247 286 18 45 chr6 40270543 40270655 -149008899 - MIR SINE MIR -144 118 10 187 333 35 11 chr6 40270652 40270739 -149008815 - L2 LINE L2 -163 3109 3021 * 681 254 90 90 chr6 40271483 40271797 -149007757 - L1MC5 LINE L1 -915 7046 6730 1886 79 0 0 chr6 40271797 40272038 -149007516 - AluSg SINE Alu -14 296 56 681 254 90 90 chr6 40272038 40272157 -149007397 - L1MC5 LINE L1 -1230 6731 6613 1002 191 12 0 chr6 40272159 40272327 -149007227 - FAM SINE Alu -5 170 1 2295 60 10 3 chr6 40272405 40272703 -149006851 - AluY SINE Alu -11 300 1 537 221 0 18 chr6 40272704 40272817 -149006737 - MIR SINE MIR -111 151 41 869 208 33 6 chr6 40273654 40273837 -149005717 + MER53 DNA DNA 1 188 -1 359 315 204 0 chr6 40274131 40274293 -149005261 + MER91A DNA MER1_type 2 196 0 257 220 0 17 chr6 40275435 40275494 -149004060 + C-rich Low_complexity Low_complexity 4 61 0 450 228 77 15 chr6 40275494 40275640 -149003914 + MIR SINE MIR 10 164 -61 2407 86 0 3 chr6 40275763 40276077 -149003477 - AluSq SINE Alu 0 313 1 698 249 35 0 chr6 40277330 40277499 -149002055 - MER5A DNA MER1_type 0 189 15 1952 120 10 3 chr6 40278304 40278595 -149000959 + AluSq SINE Alu 4 296 -17 277 284 128 27 chr6 40280994 40281142 -148998412 + L1ME3A LINE L1 5976 6138 -32 1285 159 45 0 chr6 40281212 40281432 -148998122 - AluJo SINE Alu -82 230 1 1245 120 0 5 chr6 40281457 40281641 -148997913 + AluSg/x SINE Alu 127 309 -1 353 308 24 76 chr6 40282264 40282514 -148997040 + MIR SINE MIR 2 238 -24 332 256 150 44 chr6 40282456 40282636 -148996918 - MIR SINE MIR 0 262 64 * 397 263 132 0 chr6 40283459 40283573 -148995981 - MIR3 SINE MIR -37 171 43 193 186 267 12 chr6 40283618 40283704 -148995850 - L2 LINE L2 -24 3289 3182 1957 69 9 129 chr6 40283773 40284106 -148995448 - AluSg SINE Alu -7 293 1 253 319 21 0 chr6 40284125 40284219 -148995335 + L1ME4a LINE L1 5955 6050 -71 353 246 26 26 chr6 40284253 40284367 -148995187 - FLAM_C SINE Alu -4 129 16 186 167 0 0 chr6 40284726 40284762 -148994792 + GA-rich Low_complexity Low_complexity 2 37 0 292 231 214 34 chr6 40285551 40285668 -148993886 + MIR3 SINE MIR 55 192 -16 1650 183 0 31 chr6 40285770 40286087 -148993467 + AluJb SINE Alu 5 311 -1 242 327 18 36 chr6 40286462 40286572 -148992982 - MIR SINE MIR -25 237 130 354 315 99 56 chr6 40286715 40287024 -148992530 - L1MB8 LINE L1 -245 5933 5639 2262 100 0 3 chr6 40287024 40287334 -148992220 - AluSc SINE Alu 0 309 1 354 315 99 56 chr6 40287334 40287617 -148991937 - L1MB8 LINE L1 -539 5639 5311 460 310 0 0 chr6 40287618 40287731 -148991823 - MIR SINE MIR -136 126 14 355 336 0 31 chr6 40291161 40291289 -148988265 + MER91B DNA MER1_type 12 135 -55 319 318 11 0 chr6 40291289 40291377 -148988177 + MER91B DNA MER1_type 100 188 -2 192 346 0 30 chr6 40292325 40292426 -148987128 - MER5B DNA MER1_type -80 98 1 242 326 54 8 chr6 40293940 40294069 -148985485 + L2 LINE L2 2120 2254 -1060 224 337 102 0 chr6 40295568 40295666 -148983888 + MIR3 SINE MIR 95 202 -6 1963 130 0 48 chr6 40295796 40295943 -148983611 + AluSx SINE Alu 1 127 -185 2409 41 10 0 chr6 40295943 40296235 -148983319 + AluY SINE Alu 1 295 -16 1963 130 0 48 chr6 40296235 40296402 -148983152 + AluSx SINE Alu 127 300 -12 1772 160 0 35 chr6 40296420 40296732 -148982822 + AluJb SINE Alu 9 309 -3 404 316 0 0 chr6 40297451 40297603 -148981951 + (CAGAGA)n Simple_repeat Simple_repeat 5 156 0 197 307 104 25 chr6 40298911 40299074 -148980480 - L2 LINE L2 -1017 2297 2122 282 261 141 60 chr6 40302433 40302617 -148976937 + MIR3 SINE MIR 1 199 -9 2136 117 3 0 chr6 40307659 40307958 -148971596 + AluSx SINE Alu 5 304 -8 844 221 39 54 chr6 40309454 40309754 -148969800 + L2 LINE L2 2784 3074 -239 514 123 37 0 chr6 40309773 40309854 -148969700 + AluJb SINE Alu 28 111 -201 832 146 70 6 chr6 40309913 40310084 -148969470 + MLT1C LTR MaLR 1 182 -285 712 94 0 0 chr6 40310120 40310216 -148969338 + AluSp/q SINE Alu 206 301 -12 2342 76 3 0 chr6 40310220 40310521 -148969033 + AluSg SINE Alu 1 302 -8 1757 147 10 19 chr6 40310528 40310835 -148968719 + AluSx SINE Alu 1 304 -8 197 229 0 37 chr6 40310886 40310944 -148968610 - MIR SINE MIR -137 71 19 22 0 0 0 chr6 40312505 40312527 -148967027 + GC_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr6 40312580 40312607 -148966947 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr6 40312918 40312940 -148966614 + GC_rich Low_complexity Low_complexity 1 22 0 2251 88 0 0 chr6 40313898 40314195 -148965359 + AluSx SINE Alu 5 301 -11 293 198 38 2 chr6 40314518 40314578 -148964976 + MER57A LTR ERV1 295 348 -55 213 167 24 0 chr6 40314624 40314666 -148964888 + MIR SINE MIR 92 134 -128 30 0 0 0 chr6 40314841 40314871 -148964683 + AT_rich Low_complexity Low_complexity 1 30 0 2134 111 0 0 chr6 40314871 40315160 -148964394 - AluSq SINE Alu -24 289 1 1733 161 3 17 chr6 40315699 40315997 -148963557 + AluJo SINE Alu 1 294 -18 864 143 0 8 chr6 40316032 40316165 -148963389 + FLAM_C SINE Alu 1 132 -1 191 305 211 0 chr6 40316256 40316351 -148963203 + MIR3 SINE MIR 89 203 -5 2164 119 0 10 chr6 40317402 40317712 -148961842 + AluSq SINE Alu 1 307 -6 1306 177 73 7 chr6 40317865 40318153 -148961401 + AluJb SINE Alu 1 307 -5 376 175 0 0 chr6 40318159 40318222 -148961332 - AluJb SINE Alu -35 267 205 1525 164 3 42 chr6 40318227 40318389 -148961165 - AluJb SINE Alu -13 299 153 2324 86 7 3 chr6 40318389 40318693 -148960861 - AluSq SINE Alu -8 305 1 1525 164 3 42 chr6 40318693 40318841 -148960713 - AluJb SINE Alu -159 153 1 2084 133 46 20 chr6 40318841 40318917 -148960637 + Tigger1 DNA MER2_type 2014 2087 -331 2166 114 3 3 chr6 40318917 40319225 -148960329 + AluSx SINE Alu 1 308 -4 2084 133 46 20 chr6 40319225 40319539 -148960015 + Tigger1 DNA MER2_type 2087 2414 -4 473 195 123 0 chr6 40319604 40319840 -148959714 - L1ME3A LINE L1 -214 5956 5594 1690 150 36 0 chr6 40319846 40320126 -148959428 - AluJb SINE Alu -10 302 13 799 132 0 59 chr6 40320151 40320287 -148959267 - FLAM_C SINE Alu -1 132 5 1506 148 7 24 chr6 40320293 40320420 -148959134 - L1M3 LINE L1 -573 5607 5479 2351 85 0 0 chr6 40320420 40320726 -148958828 - AluSg SINE Alu -4 306 1 1506 148 7 24 chr6 40320726 40320888 -148958666 - L1M3 LINE L1 -701 5479 5323 229 130 65 0 chr6 40320888 40320934 -148958620 - AluJb SINE Alu -8 293 245 1027 140 34 17 chr6 40321102 40321280 -148958274 - AluJb SINE Alu -45 267 87 787 211 110 25 chr6 40321280 40321434 -148958120 + Charlie2 DNA MER1_type 2475 2615 -247 2300 103 0 0 chr6 40321434 40321746 -148957808 + AluSx SINE Alu 1 312 0 2046 105 0 3 chr6 40321753 40322074 -148957480 + AluSx SINE Alu 1 320 0 787 211 110 25 chr6 40322074 40322266 -148957288 + Charlie2 DNA MER1_type 2620 2860 -2 326 112 24 208 chr6 40322318 40322365 -148957189 - MER5A DNA MER1_type -84 105 51 2249 93 36 0 chr6 40322365 40322666 -148956888 - AluSx SINE Alu 0 312 1 841 103 15 37 chr6 40322672 40322808 -148956746 - FLAM_C SINE Alu 0 133 1 326 112 24 208 chr6 40322808 40322878 -148956676 - MER5A DNA MER1_type -143 46 4 326 278 11 0 chr6 40322887 40322977 -148956577 - L1ME LINE L1 -523 5647 5557 216 277 117 52 chr6 40323025 40323256 -148956298 + L2 LINE L2 1917 2162 -1152 2256 107 3 3 chr6 40323294 40323604 -148955950 + AluSx SINE Alu 1 310 -2 904 155 0 0 chr6 40323650 40323792 -148955762 + FLAM_C SINE Alu 1 142 -1 302 201 0 174 chr6 40323793 40323851 -148955703 + MLT2C1 LTR ERVL 17 83 -314 614 231 15 15 chr6 40323851 40323981 -148955573 - FLAM_A SINE Alu -3 130 1 302 201 0 174 chr6 40323981 40324032 -148955522 + MLT2C1 LTR ERVL 83 96 -301 1967 133 0 32 chr6 40324032 40324348 -148955206 + AluSq SINE Alu 1 306 -7 302 201 0 174 chr6 40324348 40324386 -148955168 + MLT2C1 LTR ERVL 96 139 -258 2058 107 24 0 chr6 40324386 40324676 -148954878 - AluSg SINE Alu -13 297 1 1578 114 83 19 chr6 40324677 40324941 -148954613 - AluSc SINE Alu -20 289 9 878 236 78 14 chr6 40325154 40325414 -148954140 + MLT1C LTR MaLR 187 589 -4 189 107 0 0 chr6 40326251 40326279 -148953275 + (ATG)n Simple_repeat Simple_repeat 3 30 0 240 314 141 0 chr6 40326290 40326411 -148953143 - MIR SINE MIR -4 258 121 38 0 0 20 chr6 40326466 40326497 -148953057 + AT_rich Low_complexity Low_complexity 1 32 -16 1904 130 3 23 chr6 40326497 40326798 -148952756 + AluSx SINE Alu 1 295 -17 38 0 0 20 chr6 40326798 40326815 -148952739 + AT_rich Low_complexity Low_complexity 32 48 0 627 231 8 8 chr6 40326825 40326942 -148952612 + FRAM SINE Alu 1 117 -59 195 42 0 0 chr6 40327045 40327069 -148952485 + (A)n Simple_repeat Simple_repeat 1 24 0 1865 129 0 46 chr6 40327478 40327624 -148951930 + AluSx SINE Alu 1 127 -185 2228 82 24 0 chr6 40327624 40327918 -148951636 + AluSp SINE Alu 1 301 -12 1865 129 0 46 chr6 40327918 40328073 -148951481 + AluSx SINE Alu 127 288 -24 447 92 0 0 chr6 40328073 40328138 -148951416 + (TA)n Simple_repeat Simple_repeat 2 66 0 345 346 132 0 chr6 40328141 40328346 -148951208 - MIR SINE MIR -11 251 20 1870 112 3 25 chr6 40328541 40328826 -148950728 - AluSx SINE Alu -4 308 30 2080 125 0 3 chr6 40328982 40329293 -148950261 + AluSg SINE Alu 1 310 0 1847 107 56 0 chr6 40330030 40330332 -148949222 + AluSx SINE Alu 1 317 0 246 293 83 22 chr6 40330390 40330540 -148949014 - MIR SINE MIR -79 183 24 1970 123 7 0 chr6 40330742 40331061 -148948493 - AluSq SINE Alu 0 321 1 27 49 0 0 chr6 40331109 40331150 -148948404 + AT_rich Low_complexity Low_complexity 1 41 0 693 286 42 16 chr6 40332355 40332633 -148946921 + L1ME LINE L1 5411 5701 -465 5630 78 32 15 chr6 40332635 40333479 -148946075 + SVA Other Other 9 866 -520 282 49 0 0 chr6 40333582 40333623 -148945931 + AluSp/q SINE Alu 256 296 -7 2035 82 44 0 chr6 40333657 40333965 -148945589 - AluSx SINE Alu 0 321 2 2223 104 3 0 chr6 40333966 40334265 -148945289 - AluSg SINE Alu -6 304 5 539 302 88 0 chr6 40334265 40334470 -148945084 - MIR SINE MIR -37 225 3 248 246 87 0 chr6 40335102 40335171 -148944383 - MER116 DNA Mariner 0 80 6 730 158 0 0 chr6 40336962 40337076 -148942478 + AluSg/x SINE Alu 187 300 -9 2250 87 7 3 chr6 40337076 40337374 -148942180 + AluSq SINE Alu 1 299 -14 1261 201 121 35 chr6 40337458 40337862 -148941692 + MLT1J LTR MaLR 1 439 -72 740 257 93 51 chr6 40337952 40338114 -148941440 + MLT1I LTR MaLR 108 285 -124 2288 91 0 0 chr6 40338114 40338412 -148941142 + AluSx SINE Alu 1 298 -14 740 257 93 51 chr6 40338412 40338486 -148941068 + MLT1I LTR MaLR 285 354 -55 956 233 12 33 chr6 40338666 40338911 -148940643 - MLT1H LTR MaLR -296 253 14 464 301 174 17 chr6 40339220 40339456 -148940098 + MLT1J LTR MaLR 239 511 0 2372 63 0 3 chr6 40339607 40339910 -148939644 + AluY SINE Alu 1 302 -9 2373 63 3 22 chr6 40339918 40340234 -148939320 + AluY SINE Alu 1 310 -1 2196 111 0 13 chr6 40340831 40341147 -148938407 - AluSx SINE Alu 0 312 1 1194 231 165 18 chr6 40341498 40341897 -148937657 + LTR16C LTR ERVL 19 476 -15 1057 237 4 4 chr6 40341923 40342151 -148937403 - MIR SINE MIR -33 229 2 304 295 83 68 chr6 40343783 40344180 -148935374 + L1MC4a LINE L1 5665 6067 -1741 2058 99 0 40 chr6 40344262 40344565 -148934989 + AluSx SINE Alu 1 291 -21 2161 87 10 0 chr6 40344570 40344859 -148934695 + AluSg SINE Alu 1 292 -18 292 356 10 0 chr6 40344946 40345050 -148934504 + MIR SINE MIR 49 153 -109 936 161 0 13 chr6 40345052 40345207 -148934347 + FRAM SINE Alu 5 157 -19 1790 173 0 0 chr6 40345209 40345529 -148934025 + AluJo SINE Alu 1 320 0 195 241 107 18 chr6 40345620 40345732 -148933822 - L2 LINE L2 -257 3056 2935 443 185 0 0 chr6 40347277 40347358 -148932196 + MIR SINE MIR 113 193 -69 264 244 126 50 chr6 40347586 40347705 -148931849 - L2 LINE L2 0 3313 3186 2468 41 0 0 chr6 40347746 40348040 -148931514 - AluY SINE Alu -17 294 1 320 293 35 17 chr6 40348269 40348385 -148931169 - MER91A DNA MER1_type -15 181 64 300 270 111 0 chr6 40348653 40348779 -148930775 - MIR3 SINE MIR -62 146 7 1410 169 7 75 chr6 40348910 40349250 -148930304 - AluJo SINE Alu 0 328 9 554 252 7 14 chr6 40349253 40349396 -148930158 + MIR SINE MIR 121 262 0 2156 87 21 0 chr6 40349638 40349926 -148929628 + AluSx SINE Alu 4 297 -15 197 171 0 0 chr6 40349935 40349970 -148929584 - L2 LINE L2 -17 3255 3221 1562 188 34 7 chr6 40349999 40350297 -148929257 - AluJb SINE Alu 0 312 7 1776 125 7 56 chr6 40350358 40350662 -148928892 + AluSg SINE Alu 1 289 -21 853 251 40 52 chr6 40350709 40350842 -148928712 - L1MC5 LINE L1 -30 7931 7798 2232 95 0 3 chr6 40350842 40351137 -148928417 - AluSq SINE Alu -16 297 4 853 251 40 52 chr6 40351137 40351330 -148928224 - L1MC5 LINE L1 -163 7798 7609 401 219 219 0 chr6 40352508 40352613 -148926941 + MER45A DNA AcHobo 47 174 -4 2194 83 10 13 chr6 40353376 40353688 -148925866 + AluSx SINE Alu 1 311 -1 340 298 139 29 chr6 40353769 40353967 -148925587 - MIR SINE MIR -34 228 15 2194 73 27 3 chr6 40354227 40354528 -148925026 + AluSx SINE Alu 1 308 -4 209 276 0 26 chr6 40355236 40355312 -148924242 + CT-rich Low_complexity Low_complexity 2 75 0 702 263 13 36 chr6 40355941 40356165 -148923389 - L2 LINE L2 -3 3310 3092 620 279 76 0 chr6 40356772 40356944 -148922610 - MER91A DNA MER1_type 0 196 12 1768 160 3 22 chr6 40358707 40359019 -148920535 - AluJb SINE Alu -6 306 1 2271 90 0 13 chr6 40359108 40359419 -148920135 - AluSx SINE Alu 0 312 6 1348 130 0 5 chr6 40359551 40359766 -148919788 - AluSq SINE Alu -99 214 1 34 24 0 0 chr6 40359770 40359811 -148919743 + AT_rich Low_complexity Low_complexity 1 41 0 1984 135 0 3 chr6 40359821 40360117 -148919437 + AluSx SINE Alu 1 295 -17 1878 149 7 0 chr6 40360170 40360466 -148919088 + AluSx SINE Alu 1 298 -14 554 233 15 53 chr6 40360481 40360614 -148918940 - FLAM_A SINE Alu -5 128 1 5247 74 33 55 chr6 40360646 40361604 -148917950 + SVA Other Other 25 868 -636 23 0 0 0 chr6 40361974 40361997 -148917557 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 40362031 40362052 -148917502 + GC_rich Low_complexity Low_complexity 1 21 0 219 146 0 0 chr6 40362091 40362132 -148917422 + (CCG)n Simple_repeat Simple_repeat 3 43 0 24 32 0 0 chr6 40362139 40362170 -148917384 + GC_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr6 40364802 40364847 -148914707 + GC_rich Low_complexity Low_complexity 1 45 0 1661 111 49 62 chr6 40366568 40366694 -148912860 + AluSx SINE Alu 6 132 -180 2201 48 4 0 chr6 40366694 40366963 -148912591 + AluY SINE Alu 14 283 -28 2066 110 0 14 chr6 40366967 40367257 -148912297 + AluSq SINE Alu 1 286 -27 189 0 0 0 chr6 40367257 40367278 -148912276 + (CATA)n Simple_repeat Simple_repeat 2 22 0 1661 111 49 62 chr6 40367278 40367433 -148912121 + AluSx SINE Alu 133 289 -23 805 113 52 0 chr6 40367566 40367681 -148911873 - AluSq/x SINE Alu -192 121 1 1524 192 14 7 chr6 40367686 40367843 -148911711 - AluJo SINE Alu -18 294 133 2260 101 0 0 chr6 40367843 40368139 -148911415 - AluY SINE Alu -15 296 1 1524 192 14 7 chr6 40368139 40368273 -148911281 - AluJo SINE Alu -179 133 1 1799 203 108 0 chr6 40368596 40369020 -148910534 - L1ME3 LINE L1 0 6162 5693 6952 56 6 35 chr6 40369020 40370005 -148909549 - SVA Other Other 0 1386 430 5483 62 24 1 chr6 40370033 40370779 -148908775 - SVA Other Other -572 814 52 1905 117 13 30 chr6 40370919 40371079 -148908475 - AluSx SINE Alu -18 294 140 2268 77 3 26 chr6 40371079 40371389 -148908165 - AluY SINE Alu -8 303 1 1905 117 13 30 chr6 40371389 40371527 -148908027 - AluSx SINE Alu -172 140 1 1968 135 20 0 chr6 40371531 40371828 -148907726 - AluSx SINE Alu -9 303 1 1347 167 59 42 chr6 40371890 40372177 -148907377 - AluJo SINE Alu -20 292 1 223 238 12 12 chr6 40372902 40372986 -148906568 + GA-rich Low_complexity Low_complexity 3 86 0 1328 144 28 12 chr6 40373147 40373397 -148906157 - L1PA16 LINE L1 -107 6059 5806 2225 105 3 0 chr6 40373494 40373800 -148905754 - AluSx SINE Alu -5 307 1 678 156 25 25 chr6 40373800 40373922 -148905632 - AluSg/x SINE Alu -7 302 181 500 351 51 16 chr6 40373941 40374108 -148905446 + LTR16C LTR ERVL 166 326 -165 2329 95 0 0 chr6 40374108 40374412 -148905142 - AluSx SINE Alu -8 304 1 500 351 51 16 chr6 40374412 40374557 -148904997 + LTR16C LTR ERVL 326 489 -2 1094 238 102 56 chr6 40374790 40375181 -148904373 + MLT1I LTR MaLR 1 409 0 184 308 241 8 chr6 40375493 40375626 -148903928 - L2 LINE L2 -572 2742 2579 219 36 0 0 chr6 40375750 40375778 -148903776 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2298 46 0 4 chr6 40375778 40376058 -148903496 - AluY SINE Alu -32 279 1 2405 74 0 0 chr6 40376081 40376378 -148903176 - AluSg SINE Alu -13 297 1 453 61 45 0 chr6 40376378 40376444 -148903110 - MLT2C2 LTR ERVL -201 263 195 4155 2 0 2 chr6 40376593 40377111 -148902443 + HERVKC4 LTR ERVK 4746 5262 0 4159 75 16 20 chr6 40377111 40377661 -148901893 + LTR14 LTR ERVK 1 548 0 201 39 0 0 chr6 40379641 40379667 -148899887 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 1601 113 105 0 chr6 40479909 40480147 -148799407 + AluSg SINE Alu 46 308 -2 2066 109 4 0 chr6 40480382 40480649 -148798905 + AluSx SINE Alu 1 268 -44 1739 181 31 52 chr6 40481245 40481434 -148798120 - L1MB7 LINE L1 -206 5978 5786 2159 96 0 7 chr6 40481434 40481706 -148797848 - AluSx SINE Alu -6 306 37 1739 181 31 52 chr6 40481706 40481835 -148797719 - L1MB7 LINE L1 -398 5786 5669 2583 83 0 0 chr6 40481835 40482148 -148797406 - AluSp SINE Alu 0 313 1 1739 181 31 52 chr6 40482148 40482248 -148797306 - L1MB7 LINE L1 -515 5669 5568 258 316 0 54 chr6 40482514 40482682 -148796872 + C-rich Low_complexity Low_complexity 4 162 0 204 178 0 44 chr6 40483499 40483544 -148796010 + (CCA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr6 40483663 40483685 -148795869 + GC_rich Low_complexity Low_complexity 1 22 0 1219 121 6 0 chr6 40483872 40484045 -148795509 - AluSq SINE Alu -138 175 2 1426 130 42 0 chr6 40484442 40484658 -148794896 - AluJo SINE Alu -1 311 87 2398 87 3 7 chr6 40484982 40485281 -148794273 - AluSq SINE Alu -15 298 1 1188 205 36 33 chr6 40485663 40485910 -148793644 - L1MDb LINE L1 -4987 1422 1172 2216 126 7 3 chr6 40485910 40486220 -148793334 - AluSq SINE Alu -2 311 1 1188 205 36 33 chr6 40486220 40486303 -148793251 - L1MDb LINE L1 -5237 1172 1091 1089 117 49 208 chr6 40486305 40486534 -148793020 - AluJb SINE Alu -3 309 140 270 0 0 0 chr6 40486534 40486564 -148792990 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1089 117 49 208 chr6 40486564 40486642 -148792912 - AluJb SINE Alu -172 140 51 2204 137 0 0 chr6 40486673 40486966 -148792588 - AluSx SINE Alu -17 295 3 2260 106 3 0 chr6 40486976 40487269 -148792285 - AluSx SINE Alu -6 306 13 2161 144 0 0 chr6 40489632 40489944 -148789610 + AluSx SINE Alu 1 312 0 283 273 39 0 chr6 40490056 40490133 -148789421 + L1MC4 LINE L1 7403 7482 -560 1130 61 0 0 chr6 40490134 40490266 -148789288 + AluSq/x SINE Alu 1 132 -180 2266 85 17 0 chr6 40490268 40490561 -148788993 + AluSx SINE Alu 1 298 -14 2200 94 7 0 chr6 40490563 40490839 -148788715 + AluSq SINE Alu 1 278 -35 180 0 0 0 chr6 40490843 40490863 -148788691 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 299 222 148 0 chr6 40490863 40490971 -148788583 + L1MC4 LINE L1 7615 7738 -304 1416 58 116 0 chr6 40491115 40491304 -148788250 - AluSq SINE Alu -102 211 1 1624 94 0 31 chr6 40491314 40491538 -148788016 - AluSg/x SINE Alu -4 308 92 1924 181 0 3 chr6 40495156 40495466 -148784088 - AluJo SINE Alu 0 312 4 2256 112 0 3 chr6 40496271 40496566 -148782988 - AluSg SINE Alu -16 294 1 300 297 0 0 chr6 40496738 40496812 -148782742 - L2 LINE L2 -12 3260 3187 2211 72 69 0 chr6 40496918 40497195 -148782359 + AluY SINE Alu 1 296 -15 23 33 0 0 chr6 40497409 40497439 -148782115 + GC_rich Low_complexity Low_complexity 1 30 0 220 311 49 25 chr6 40497601 40497723 -148781831 - L2 LINE L2 -114 3199 3075 1747 182 0 4 chr6 40497776 40498056 -148781498 - AluJb SINE Alu -33 279 1 930 308 27 7 chr6 40498059 40498549 -148781005 - L2 LINE L2 -238 3075 2572 327 321 0 0 chr6 40498549 40498658 -148780896 - L2 LINE L2 -1162 2152 2044 1840 178 27 0 chr6 40498661 40498954 -148780600 - AluJb SINE Alu -10 302 2 444 229 0 29 chr6 40498977 40499118 -148780436 - L1PB4 LINE L1 0 6166 6029 2281 97 0 10 chr6 40499119 40499419 -148780135 - AluSx SINE Alu -15 297 1 1725 174 66 3 chr6 40499419 40499706 -148779848 - AluSx SINE Alu -6 306 1 619 133 0 29 chr6 40499709 40499788 -148779766 - L1PA15 LINE L1 -259 5906 5829 2476 97 0 0 chr6 40499788 40500098 -148779456 - AluSq SINE Alu -3 310 1 619 133 0 29 chr6 40500098 40500123 -148779431 - L1PA15 LINE L1 -336 5829 5805 600 207 95 41 chr6 40500125 40500294 -148779260 - MER20 DNA MER1_type -41 178 1 418 154 0 13 chr6 40500326 40500404 -148779150 + MER20 DNA MER1_type 142 218 -1 809 243 55 113 chr6 40500427 40500578 -148778976 - PABL_B LTR ERV1 0 667 509 2508 87 0 0 chr6 40500578 40500878 -148778676 - AluSc SINE Alu -9 300 1 809 243 55 113 chr6 40500878 40501434 -148778120 - PABL_B LTR ERV1 -158 509 1 643 243 138 0 chr6 40501435 40501653 -148777901 - L2 LINE L2 -1375 1939 1692 26 30 0 0 chr6 40501659 40501692 -148777862 + AT_rich Low_complexity Low_complexity 1 33 0 2403 81 24 0 chr6 40501766 40502063 -148777491 + AluSx SINE Alu 5 308 -4 1372 269 259 12 chr6 40502205 40503035 -148776519 - L2 LINE L2 -1605 1709 675 1866 148 9 49 chr6 40503042 40503179 -148776375 + AluSx SINE Alu 1 142 -170 2288 109 10 3 chr6 40503179 40503490 -148776064 + AluSq SINE Alu 1 313 0 2316 80 0 35 chr6 40503492 40503803 -148775751 + AluY SINE Alu 1 300 -11 1866 148 9 49 chr6 40503803 40503987 -148775567 + AluSx SINE Alu 143 312 0 726 137 8 0 chr6 40503996 40504113 -148775441 + AluJb SINE Alu 190 307 -5 2224 117 10 0 chr6 40504113 40504422 -148775132 + AluSq SINE Alu 1 312 -1 2064 117 0 13 chr6 40504663 40504962 -148774592 - AluY SINE Alu -16 295 1 265 230 0 35 chr6 40504962 40505049 -148774505 - L1MDb LINE L1 -5235 1174 1091 1089 117 49 208 chr6 40505052 40505281 -148774273 - AluJb SINE Alu -3 309 140 270 0 0 0 chr6 40505281 40505311 -148774243 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1089 117 49 208 chr6 40505311 40505389 -148774165 - AluJb SINE Alu -172 140 51 2204 137 0 0 chr6 40505420 40505713 -148773841 - AluSx SINE Alu -17 295 3 198 0 0 0 chr6 40505723 40505745 -148773809 + (T)n Simple_repeat Simple_repeat 1 22 0 393 127 14 0 chr6 40505856 40505927 -148773627 - L1M4 LINE L1 -948 5198 5127 1180 162 5 72 chr6 40505934 40506156 -148773398 + AluJo SINE Alu 87 293 -19 582 200 6 53 chr6 40506161 40506331 -148773223 - L1M4 LINE L1 -1022 5124 4963 * 1995 199 5 12 chr6 40506329 40506760 -148772794 - L1M4 LINE L1 -3118 3028 2601 672 235 66 0 chr6 40506764 40506930 -148772624 + LTR16A LTR ERVL 86 262 -188 269 286 9 71 chr6 40507055 40507167 -148772387 - L2 LINE L2 -625 2689 2585 2582 85 0 0 chr6 40507235 40507540 -148772014 - AluSx SINE Alu -7 305 1 1991 139 11 0 chr6 40507540 40507820 -148771734 - AluSx SINE Alu -29 283 1 214 300 320 20 chr6 40507821 40508021 -148771533 + L2 LINE L2 3054 3313 0 2232 213 144 70 chr6 40508425 40508788 -148770766 - L2 LINE L2 -74 3239 2904 2215 98 27 0 chr6 40508788 40509085 -148770469 + AluY SINE Alu 5 309 -2 2232 213 144 70 chr6 40509085 40509374 -148770180 - L2 LINE L2 -409 2904 2638 2918 19 0 0 chr6 40509374 40509686 -148769868 - AluYb8 SINE Alu -6 312 1 2232 213 144 70 chr6 40509686 40510130 -148769424 - L2 LINE L2 -675 2638 2061 1885 158 3 3 chr6 40510203 40510500 -148769054 - AluJb SINE Alu -7 305 9 582 286 88 64 chr6 40511367 40511755 -148767799 + L1ME LINE L1 5311 5707 -414 2145 112 33 13 chr6 40511757 40512061 -148767493 + AluSx SINE Alu 3 312 0 905 204 0 17 chr6 40512101 40512277 -148767277 + FRAM SINE Alu 1 165 -11 2078 215 45 28 chr6 40512388 40512485 -148767069 + L1MC4 LINE L1 7457 7551 -491 2109 94 59 3 chr6 40512485 40512773 -148766781 + AluSq SINE Alu 1 304 -9 2078 215 45 28 chr6 40512773 40513251 -148766303 + L1MC4 LINE L1 7551 8042 0 288 0 0 0 chr6 40514386 40514418 -148765136 + (CTG)n Simple_repeat Simple_repeat 2 33 0 301 262 41 35 chr6 40515311 40515456 -148764098 + GA-rich Low_complexity Low_complexity 2 147 0 522 304 32 23 chr6 40516285 40516505 -148763049 + MIR SINE MIR 8 229 -33 361 235 51 10 chr6 40516575 40516673 -148762881 - MIR SINE MIR -69 139 38 264 202 228 35 chr6 40518881 40518995 -148760559 - MER91C DNA MER1_type -2 138 3 951 223 100 0 chr6 40519278 40519498 -148760056 - MIR SINE MIR -19 243 2 792 253 10 10 chr6 40520673 40520871 -148758683 - MIR SINE MIR -1 261 64 270 246 15 0 chr6 40521447 40521512 -148758042 - MER91B DNA MER1_type -113 77 12 194 324 160 71 chr6 40521618 40521872 -148757682 - L2 LINE L2 0 3272 2989 2124 139 0 16 chr6 40521872 40522008 -148757546 + AluSx SINE Alu 1 138 -174 2194 82 0 0 chr6 40522008 40522278 -148757276 + AluY SINE Alu 35 304 -7 2124 139 0 16 chr6 40522278 40522458 -148757096 + AluSx SINE Alu 138 312 0 194 324 160 71 chr6 40522458 40522484 -148757070 - L2 LINE L2 -283 2989 2967 225 209 0 0 chr6 40522485 40522528 -148757026 + GA-rich Low_complexity Low_complexity 2 44 0 270 326 39 23 chr6 40522528 40522657 -148756897 - L2 LINE L2 -263 3009 2879 308 248 47 81 chr6 40523339 40523365 -148756189 - L2 LINE L2 -2 3311 3286 2160 105 7 33 chr6 40523365 40523669 -148755885 + AluSx SINE Alu 1 296 -16 308 248 47 81 chr6 40523669 40523791 -148755763 - L2 LINE L2 -27 3286 3168 225 94 0 0 chr6 40523803 40523835 -148755719 + (TA)n Simple_repeat Simple_repeat 2 33 0 219 277 10 40 chr6 40524325 40524426 -148755128 + G-rich Low_complexity Low_complexity 2 99 0 * 243 235 20 0 chr6 40524376 40524427 -148755127 + GA-rich Low_complexity Low_complexity 3 54 0 937 196 108 10 chr6 40524710 40524904 -148754650 + AluJb SINE Alu 82 294 -18 2061 101 21 31 chr6 40526657 40526986 -148752568 - AluSx SINE Alu 0 326 1 2069 118 0 4 chr6 40527006 40527316 -148752238 - AluSg SINE Alu 0 309 1 567 340 80 21 chr6 40527640 40528221 -148751333 + L2 LINE L2 2468 3089 -183 203 268 99 0 chr6 40528221 40528292 -148751262 - MIR SINE MIR -171 91 14 2029 112 45 52 chr6 40528323 40528385 -148751169 - L1MA4 LINE L1 0 6300 6239 2135 130 10 3 chr6 40528385 40528692 -148750862 - AluSx SINE Alu -1 311 3 2029 112 45 52 chr6 40528692 40529030 -148750524 - L1MA4 LINE L1 -61 6239 5903 3433 148 47 22 chr6 40529116 40529536 -148750018 - L1MA4 LINE L1 -380 5920 5512 2070 159 0 3 chr6 40529536 40529844 -148749710 - AluSx SINE Alu -5 307 1 3433 148 47 22 chr6 40529844 40530270 -148749284 - L1MA4 LINE L1 -788 5512 5036 1855 109 91 7 chr6 40530270 40530546 -148749008 - AluSg SINE Alu -11 299 1 3433 148 47 22 chr6 40530546 40530631 -148748923 - L1MA4 LINE L1 -1264 5036 4955 1318 119 5 68 chr6 40530632 40530851 -148748703 - AluSg/x SINE Alu -9 301 97 203 387 95 15 chr6 40531133 40531407 -148748147 + L2 LINE L2 2973 3268 -4 184 336 92 30 chr6 40531611 40531873 -148747681 - L2 LINE L2 -349 2965 2688 390 242 124 54 chr6 40532147 40532445 -148747109 - L1ME4a LINE L1 -2 6119 5801 924 139 0 0 chr6 40532765 40532894 -148746660 + AluSg/x SINE Alu 137 265 -47 225 0 0 0 chr6 40532914 40532939 -148746615 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2331 94 0 16 chr6 40532939 40533246 -148746308 + AluSc SINE Alu 1 302 -7 1162 255 47 15 chr6 40533333 40533741 -148745813 + L1MDb LINE L1 754 1174 -5235 * 4297 26 37 0 chr6 40533737 40534245 -148745309 - L1PA4 LINE L1 -1130 5016 4490 7757 29 2 0 chr6 40534245 40535391 -148744163 + L1PA4 LINE L1 5007 6155 0 713 201 43 14 chr6 40535415 40535446 -148744108 + L1M4 LINE L1 956 985 -5397 420 161 46 11 chr6 40535446 40535533 -148744021 + L1PA5 LINE L1 6048 6137 -17 713 201 43 14 chr6 40535533 40535753 -148743801 + L1M4 LINE L1 985 1317 -5065 * 32666 108 20 62 chr6 40535752 40537462 -148742092 + L1PA6 LINE L1 3 1783 -4371 2464 75 0 0 chr6 40537462 40537756 -148741798 + AluY SINE Alu 5 298 -13 32666 108 20 62 chr6 40537756 40542483 -148737071 + L1PA6 LINE L1 1783 6153 -1 273 231 9 28 chr6 40542466 40542574 -148736980 + L1M4 LINE L1 1285 1390 -4992 * 1299 155 0 19 chr6 40542603 40542810 -148736744 - AluJb SINE Alu -28 284 82 974 249 86 9 chr6 40542820 40543145 -148736409 + L1M4 LINE L1 1408 1757 -4625 1332 260 71 0 chr6 40543159 40543593 -148735961 + L1M4 LINE L1 4518 4982 -1400 2342 190 0 14 chr6 40543605 40544020 -148735534 + L1PA12 LINE L1 7 415 -7166 236 376 0 0 chr6 40544349 40544466 -148735088 + C-rich Low_complexity Low_complexity 6 122 0 1704 215 111 29 chr6 40544645 40545328 -148734226 - L1MC5 LINE L1 -442 7519 6781 229 192 19 0 chr6 40545339 40545391 -148734163 - L1MC5 LINE L1 -1224 6737 6685 550 210 70 0 chr6 40545410 40545567 -148733987 - L2 LINE L2 -1605 1709 1542 1481 235 78 88 chr6 40545567 40545594 -148733960 - L2 LINE L2 -1928 1386 1360 2221 121 7 0 chr6 40545594 40545900 -148733654 + AluSx SINE Alu 1 308 -4 1481 235 78 88 chr6 40545900 40546713 -148732841 - L2 LINE L2 -1954 1360 554 2142 136 0 13 chr6 40547031 40547333 -148732221 - AluSx SINE Alu -14 298 1 211 136 0 0 chr6 40547772 40547816 -148731738 - MIR SINE MIR -83 125 82 1359 67 0 0 chr6 40547994 40548173 -148731381 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 252 190 7 70 chr6 40548263 40548347 -148731207 + MIR SINE MIR 83 162 -46 200 330 29 0 chr6 40548985 40549088 -148730466 + G-rich Low_complexity Low_complexity 1 106 0 687 221 139 89 chr6 40549910 40550226 -148729328 + MSTD LTR MaLR 3 334 -62 876 109 0 0 chr6 40550226 40550345 -148729209 - AluSx SINE Alu 0 309 191 1224 58 0 0 chr6 40550346 40550484 -148729070 - AluSx SINE Alu -172 141 4 291 153 0 51 chr6 40550859 40550918 -148728636 - Charlie7 DNA MER1_type -4 2608 2553 228 326 61 7 chr6 40551154 40551301 -148728253 + MIR SINE MIR 84 238 -24 2513 172 25 37 chr6 40552027 40552956 -148726598 + MER41-int LTR ERV1 3 1482 -4464 4317 138 50 42 chr6 40553014 40553828 -148725726 + MER41-int LTR ERV1 767 2265 -2615 1958 164 44 109 chr6 40553843 40554300 -148725254 + MER41-int LTR ERV1 2989 3415 -4122 1923 138 45 3 chr6 40554352 40554642 -148724912 - AluJo SINE Alu -10 302 1 1018 159 34 117 chr6 40554694 40555005 -148724549 + MER41-int LTR ERV1 1027 1362 -4584 453 81 0 0 chr6 40555005 40555067 -148724487 + (TA)n Simple_repeat Simple_repeat 2 63 0 2180 117 0 0 chr6 40555067 40555348 -148724206 - AluSc SINE Alu -28 281 1 1018 159 34 117 chr6 40555348 40555480 -148724074 + MER41-int LTR ERV1 1360 3005 -2941 2249 120 0 7 chr6 40556094 40556402 -148723152 + AluSg SINE Alu 1 306 -4 575 279 97 6 chr6 40556578 40556743 -148722811 + MER5A DNA MER1_type 9 188 -1 344 261 144 18 chr6 40557056 40557167 -148722387 + MER5A DNA MER1_type 64 188 -1 206 333 8 8 chr6 40557592 40557709 -148721845 - L2 LINE L2 -2365 949 833 517 203 123 44 chr6 40557733 40558049 -148721505 + HAL1 LINE L1 863 1203 -1304 * 618 280 65 39 chr6 40558048 40558384 -148721170 - L1M4 LINE L1 -1835 4311 3967 2078 117 3 3 chr6 40558384 40558699 -148720855 - AluSq SINE Alu 0 315 1 1602 175 60 30 chr6 40558735 40559066 -148720488 + MER58B DNA MER1_type 1 341 0 226 265 60 24 chr6 40559120 40559203 -148720351 - HAL1 LINE L1 -2108 399 314 217 284 8 50 chr6 40561210 40561324 -148718230 + MIR SINE MIR 30 140 -85 432 51 0 0 chr6 40561324 40561383 -148718171 + (TG)n Simple_repeat Simple_repeat 1 59 0 2317 95 3 0 chr6 40561877 40562172 -148717382 - AluSx SINE Alu -16 296 1 1217 203 18 0 chr6 40562225 40562442 -148717112 - MER58A DNA MER1_type -2 222 2 736 252 86 14 chr6 40562446 40562656 -148716898 + MIR SINE MIR 27 251 -11 1893 137 14 17 chr6 40562666 40562959 -148716595 + AluSx SINE Alu 2 293 -19 1991 123 32 0 chr6 40562963 40563279 -148716275 - AluSx SINE Alu 0 325 1 646 191 72 7 chr6 40563927 40564079 -148715475 - L1MD3 LINE L1 -2 7993 7832 839 253 183 16 chr6 40564277 40564739 -148714815 - L2 LINE L2 -10 3303 2771 899 121 29 40 chr6 40564746 40564920 -148714634 - L1MB3 LINE L1 -1 6182 6011 2240 111 7 0 chr6 40564920 40565218 -148714336 + AluSx SINE Alu 1 300 -12 476 218 6 51 chr6 40565231 40565270 -148714284 - L1MC4 LINE L1 0 8042 8003 1797 125 40 15 chr6 40565270 40565542 -148714012 + AluJb SINE Alu 20 298 -14 476 218 6 51 chr6 40565542 40565658 -148713896 - L1MC4 LINE L1 -39 8003 7894 352 221 142 0 chr6 40565719 40565832 -148713722 - L1MC4 LINE L1 -304 7738 7610 2013 92 21 4 chr6 40565843 40566124 -148713430 - AluSq SINE Alu -27 286 1 1056 68 0 8 chr6 40566126 40566259 -148713295 - AluSq/x SINE Alu -180 132 1 292 273 39 0 chr6 40566260 40566337 -148713217 - L1MC4 LINE L1 -560 7482 7403 2114 144 0 0 chr6 40566449 40566761 -148712793 - AluSx SINE Alu 0 312 1 1878 104 12 4 chr6 40567022 40567281 -148712273 + AluSx SINE Alu 42 302 -10 722 196 136 18 chr6 40567390 40567610 -148711944 - MIR SINE MIR 0 262 17 216 0 0 0 chr6 40567756 40567780 -148711774 + (TG)n Simple_repeat Simple_repeat 1 24 0 2127 130 0 0 chr6 40567780 40568061 -148711493 - AluSx SINE Alu -28 284 1 939 241 45 20 chr6 40568389 40568634 -148710920 + MIR SINE MIR 12 262 0 228 307 0 39 chr6 40569927 40570054 -148709500 + A-rich Low_complexity Low_complexity 3 124 0 181 294 35 12 chr6 40570482 40570567 -148708987 - L2 LINE L2 -30 3283 3197 25 51 0 0 chr6 40571704 40571743 -148707811 + AT_rich Low_complexity Low_complexity 1 39 0 185 318 176 0 chr6 40571753 40571838 -148707716 + L3 LINE CR1 1045 1144 -433 316 295 73 39 chr6 40571866 40572160 -148707394 + L3 LINE CR1 1211 1575 -2 203 152 0 0 chr6 40572489 40572522 -148707032 + GA-rich Low_complexity Low_complexity 2 34 0 2100 93 7 0 chr6 40572775 40573045 -148706509 - AluSx SINE Alu -40 272 1 2337 94 7 0 chr6 40573852 40574150 -148705404 + AluSg SINE Alu 1 300 -10 1079 259 82 56 chr6 40574705 40575326 -148704228 - L1MC4a LINE L1 -1875 5933 5297 853 270 178 14 chr6 40575377 40575639 -148703915 + L2 LINE L2 2473 2691 -622 1690 143 29 25 chr6 40575639 40575950 -148703604 - AluJo SINE Alu 0 312 1 853 270 178 14 chr6 40575950 40576401 -148703153 + L2 LINE L2 2691 3312 -1 3836 127 40 0 chr6 40576506 40576618 -148702936 + L1PA16 LINE L1 5521 5627 -568 285 29 0 0 chr6 40576618 40576652 -148702902 + (TA)n Simple_repeat Simple_repeat 1 34 0 3836 127 40 0 chr6 40576652 40577189 -148702365 + L1PA16 LINE L1 5627 6195 0 310 309 68 19 chr6 40577232 40577394 -148702160 - L1MC4a LINE L1 -1098 5048 4879 304 262 119 0 chr6 40577394 40577478 -148702076 + MER106A DNA MER1_type 1 94 -142 304 29 0 0 chr6 40577514 40577548 -148702006 - L1P LINE L1 -1844 4302 4269 315 205 27 98 chr6 40577548 40577660 -148701894 + MER106B DNA MER1_type 906 1009 -50 376 269 119 73 chr6 40577660 40578114 -148701440 - L1MC4a LINE L1 -1370 4776 4302 13908 96 12 3 chr6 40578315 40581060 -148698494 - L1PA8 LINE L1 0 6172 3401 9147 145 2 7 chr6 40581060 40582663 -148696891 - L1PA8 LINE L1 -3609 2537 942 207 0 0 0 chr6 40582675 40582698 -148696856 + (T)n Simple_repeat Simple_repeat 1 23 0 256 315 0 11 chr6 40583312 40583404 -148696150 + A-rich Low_complexity Low_complexity 2 92 0 22 35 0 0 chr6 40583755 40583784 -148695770 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 40583882 40583907 -148695647 + AT_rich Low_complexity Low_complexity 1 25 0 368 302 92 64 chr6 40584064 40585650 -148693904 - L1ME LINE L1 -350 5881 4246 612 158 20 0 chr6 40585810 40585911 -148693643 - U6 snRNA snRNA -4 103 1 605 309 107 32 chr6 40585986 40586417 -148693137 - L1ME LINE L1 -3903 2493 2031 386 306 56 25 chr6 40586694 40586890 -148692664 - HAL1 LINE L1 -829 1678 1477 730 278 63 39 chr6 40587316 40587650 -148691904 - MLT1J2 LTR MaLR -44 406 65 1714 189 10 86 chr6 40587658 40588146 -148691408 - MLT1D LTR MaLR 0 505 55 269 274 17 43 chr6 40590018 40590135 -148689419 - MIR SINE MIR -121 141 28 25 90 0 0 chr6 40590251 40590318 -148689236 + AT_rich Low_complexity Low_complexity 1 67 0 371 339 148 5 chr6 40590813 40591192 -148688362 - L2 LINE L2 -164 3108 2670 414 290 104 100 chr6 40591192 40591409 -148688145 - L2 LINE L2 -2696 618 403 1471 139 10 0 chr6 40591409 40591618 -148687936 + AluJo SINE Alu 86 296 -16 414 290 104 100 chr6 40591618 40591662 -148687892 - L2 LINE L2 -2911 403 361 1464 104 73 0 chr6 40591662 40591922 -148687632 - L1MA8 LINE L1 -5 6286 6008 414 290 104 100 chr6 40591922 40591933 -148687621 - L2 LINE L2 -2953 361 352 1893 147 7 20 chr6 40591933 40592226 -148687328 - AluSx SINE Alu -21 291 3 414 290 104 100 chr6 40592226 40592472 -148687082 - L2 LINE L2 -2962 352 96 454 286 143 5 chr6 40592785 40592981 -148686573 - MIR SINE MIR -1 261 39 1591 178 22 7 chr6 40593294 40593570 -148685984 + AluJo SINE Alu 1 280 -32 2140 124 41 3 chr6 40593710 40594074 -148685480 - L1 LINE L1 -1785 4361 3984 2270 99 0 30 chr6 40594085 40594387 -148685167 - AluSx SINE Alu -19 293 1 2522 87 0 0 chr6 40594557 40594866 -148684688 - AluSg SINE Alu -1 309 1 419 258 43 63 chr6 40595072 40595286 -148684268 + MIR SINE MIR 1 206 -44 389 333 47 0 chr6 40595307 40595436 -148684118 + L2 LINE L2 3137 3271 -1 2361 96 7 0 chr6 40596930 40597231 -148682323 + AluSp SINE Alu 1 303 -10 235 329 0 0 chr6 40597293 40597366 -148682188 - L1ME LINE L1 -321 5849 5777 210 293 80 0 chr6 40597373 40597448 -148682106 + MIR3 SINE MIR 124 204 -4 2471 83 3 0 chr6 40599624 40599926 -148679628 + AluY SINE Alu 1 303 -8 600 158 41 94 chr6 40599937 40600017 -148679537 - MIR SINE MIR -27 235 152 1267 112 79 0 chr6 40600017 40600232 -148679322 - MER46A DNA MER2_type -2 234 3 1936 155 7 23 chr6 40600232 40600401 -148679153 - AluSx SINE Alu -8 304 134 260 26 0 26 chr6 40600401 40600439 -148679115 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2345 89 0 0 chr6 40600439 40600720 -148678834 - AluY SINE Alu -30 281 1 1936 155 7 23 chr6 40600720 40600858 -148678696 - AluSx SINE Alu -176 136 1 600 158 41 94 chr6 40600858 40600947 -148678607 - MIR SINE MIR -108 154 74 863 177 55 11 chr6 40601838 40602019 -148677535 + MER5A DNA MER1_type 1 189 0 2677 52 0 0 chr6 40602022 40602330 -148677224 + AluY SINE Alu 1 308 -3 233 194 15 75 chr6 40602367 40602434 -148677120 - MIR SINE MIR -64 144 82 354 130 19 0 chr6 40605091 40605145 -148674409 - L2 LINE L2 -13 3300 3246 1990 139 33 12 chr6 40605518 40605848 -148673706 + MER1B DNA MER1_type 1 337 0 416 247 247 0 chr6 40606022 40606184 -148673370 - MIR SINE MIR 0 262 61 740 169 15 0 chr6 40606357 40606487 -148673067 - AluJb SINE Alu -5 307 176 2228 115 3 3 chr6 40606622 40606926 -148672628 - AluSx SINE Alu -8 304 1 233 283 0 0 chr6 40606967 40607020 -148672534 - L2 LINE L2 -6 3307 3255 315 318 0 38 chr6 40609764 40609896 -148669658 + C-rich Low_complexity Low_complexity 3 129 0 237 115 33 33 chr6 40609901 40609962 -148669592 + CT-rich Low_complexity Low_complexity 3 63 0 21 57 0 0 chr6 40610245 40610280 -148669274 + GC_rich Low_complexity Low_complexity 1 35 0 555 177 65 24 chr6 40612547 40612671 -148666883 + FLAM_A SINE Alu 1 129 -4 270 73 0 0 chr6 40614476 40614517 -148665037 + (TTG)n Simple_repeat Simple_repeat 1 41 0 2272 89 3 51 chr6 40618111 40618424 -148661130 + AluSp SINE Alu 1 298 -15 353 290 145 8 chr6 40625922 40626053 -148653501 - L2 LINE L2 -4 3309 3161 382 172 16 0 chr6 40626068 40626132 -148653422 - MER5A DNA MER1_type 0 189 125 636 178 0 0 chr6 40626132 40626239 -148653315 + FLAM_C SINE Alu 1 107 -36 457 190 0 0 chr6 40626244 40626323 -148653231 - MER5A DNA MER1_type -51 138 60 365 286 282 27 chr6 40626422 40626755 -148652799 - L2 LINE L2 -292 2980 2560 417 307 130 34 chr6 40627490 40627677 -148651877 + MIR SINE MIR 2 218 -44 1252 157 63 47 chr6 40627677 40627814 -148651740 - MER33 DNA MER1_type -2261 324 191 2491 81 0 0 chr6 40627814 40628112 -148651442 - AluSg SINE Alu -12 298 1 1252 157 63 47 chr6 40628112 40628292 -148651262 - MER33 DNA MER1_type -2394 191 2 417 307 130 34 chr6 40628292 40628342 -148651212 + MIR SINE MIR 218 262 0 204 143 0 0 chr6 40628672 40628714 -148650840 + (CTG)n Simple_repeat Simple_repeat 3 44 0 1192 114 0 33 chr6 40634330 40634514 -148645040 - AluSp SINE Alu -2 311 134 189 0 0 0 chr6 40634514 40634535 -148645019 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 706 79 18 18 chr6 40634566 40634680 -148644874 - AluY SINE Alu 0 311 198 352 130 19 0 chr6 40635225 40635279 -148644275 - L2 LINE L2 -13 3300 3246 2071 140 33 9 chr6 40635652 40635981 -148643573 + MER1B DNA MER1_type 1 337 0 391 241 247 0 chr6 40636155 40636317 -148643237 - MIR SINE MIR 0 262 61 770 169 15 0 chr6 40636490 40636620 -148642934 - AluJb SINE Alu -5 307 176 2321 99 3 0 chr6 40636755 40637057 -148642497 - AluY SINE Alu -8 303 1 2060 97 3 7 chr6 40637093 40637382 -148642172 - AluSx SINE Alu -24 288 1 2233 82 0 7 chr6 40639759 40640073 -148639481 - AluSg SINE Alu 0 312 1 408 139 38 13 chr6 40640486 40640565 -148638989 - MER5B DNA MER1_type -2 176 96 1435 167 29 78 chr6 40640565 40640724 -148638830 - AluJb SINE Alu -12 300 135 2273 112 0 0 chr6 40640724 40641027 -148638527 - AluSx SINE Alu -9 303 1 1932 52 4 4 chr6 40641035 40641265 -148638289 - AluY SINE Alu -8 303 74 1435 167 29 78 chr6 40641265 40641402 -148638152 - AluJb SINE Alu -184 128 10 481 233 0 0 chr6 40641410 40641513 -148638041 - MER5B DNA MER1_type -75 103 1 187 350 127 21 chr6 40641858 40642329 -148637225 - L2 LINE L2 -479 2835 2315 2311 93 3 0 chr6 40642806 40643097 -148636457 - AluSq SINE Alu -21 292 1 207 363 0 0 chr6 40643230 40643321 -148636233 + L2 LINE L2 3180 3270 -43 193 73 24 24 chr6 40646168 40646209 -148633345 + (CGG)n Simple_repeat Simple_repeat 2 42 0 257 281 45 22 chr6 40647075 40647164 -148632390 + MER102a DNA MER1_type 1 91 -239 2154 129 7 0 chr6 40647556 40647858 -148631696 + AluSx SINE Alu 1 304 -8 409 295 63 32 chr6 40647893 40648083 -148631471 - MER117 DNA MER1_type 0 197 2 296 299 11 0 chr6 40648800 40648887 -148630667 - MIR SINE MIR -119 143 56 508 100 12 0 chr6 40649083 40649163 -148630391 - L1MA5 LINE L1 -5 6295 6215 466 205 186 31 chr6 40650305 40650466 -148629088 + MER5A DNA MER1_type 4 189 0 461 182 0 13 chr6 40650858 40650935 -148628619 + AluJ/FLAM SINE Alu 2 77 -235 255 61 0 0 chr6 40650955 40650988 -148628566 + (TG)n Simple_repeat Simple_repeat 1 33 0 32 0 0 0 chr6 40651780 40651812 -148627742 + AT_rich Low_complexity Low_complexity 1 32 0 525 89 13 0 chr6 40652131 40652210 -148627344 - L1PA16 LINE L1 -9 6157 6078 31 44 0 0 chr6 40653120 40653165 -148626389 + AT_rich Low_complexity Low_complexity 1 45 0 2299 102 0 3 chr6 40653599 40653902 -148625652 - AluY SINE Alu -9 302 1 241 261 21 78 chr6 40653983 40654125 -148625429 - MIR SINE MIR -11 251 118 1735 175 7 11 chr6 40655585 40655904 -148623650 + AluJo SINE Alu 1 318 0 3252 89 20 0 chr6 40656601 40657052 -148622502 - LTR46 LTR ERV1 0 460 1 2110 95 25 7 chr6 40657532 40657815 -148621739 + AluSx SINE Alu 1 288 -24 311 0 26 0 chr6 40657820 40657859 -148621695 + (TG)n Simple_repeat Simple_repeat 2 41 0 299 232 0 145 chr6 40658739 40658877 -148620677 - L2 LINE L2 -3 3269 3152 614 176 9 0 chr6 40659486 40659594 -148619960 + L1PB4 LINE L1 6034 6142 -14 2338 88 0 16 chr6 40659647 40659781 -148619773 + AluSg SINE Alu 1 136 -174 2296 113 0 3 chr6 40659781 40660082 -148619472 + AluSx SINE Alu 1 300 -12 2338 88 0 16 chr6 40660082 40660253 -148619301 + AluSg SINE Alu 136 301 -9 1592 132 108 54 chr6 40660256 40660392 -148619162 + AluSx SINE Alu 1 128 -184 2136 81 3 55 chr6 40660392 40660700 -148618854 + AluY SINE Alu 1 292 -19 1592 132 108 54 chr6 40660700 40660858 -148618696 + AluSx SINE Alu 128 311 -1 302 377 0 0 chr6 40662513 40662680 -148616874 + (CCA)n Simple_repeat Simple_repeat 2 168 0 21 36 0 0 chr6 40665505 40665533 -148614021 + AT_rich Low_complexity Low_complexity 1 28 0 496 248 110 21 chr6 40666448 40666667 -148612887 - MER102a DNA MER1_type -4 326 92 3609 104 23 0 chr6 40667292 40667812 -148611742 + L1PA13 LINE L1 5627 6158 -5 1185 285 97 31 chr6 40668613 40669435 -148610119 - L2 LINE L2 -4 3309 2325 2072 140 15 50 chr6 40669567 40669966 -148609588 - L1MB8 LINE L1 -5 6173 5789 5865 116 11 3 chr6 40670040 40671449 -148608105 - L1PA13 LINE L1 0 6163 4739 878 89 73 0 chr6 40671566 40671689 -148607865 - AluY SINE Alu -179 132 1 1982 129 4 0 chr6 40672925 40673225 -148606329 - AluSx SINE Alu 0 301 1 551 255 98 14 chr6 40673487 40673707 -148605847 - MER102b DNA MER1_type -4 337 92 8725 109 7 5 chr6 40674098 40675323 -148604231 - L1P3 LINE L1 -5226 1235 8 231 228 0 0 chr6 40675498 40675555 -148603999 - L1M2 LINE L1 -3958 2891 2835 2016 148 0 19 chr6 40675793 40676111 -148603443 - AluSx SINE Alu 0 312 1 743 251 95 40 chr6 40676173 40676710 -148602844 - L1MEd LINE L1 -4722 1409 948 371 130 0 0 chr6 40676823 40676877 -148602677 - MSTA-int LTR MaLR -1597 54 1 2315 104 149 8 chr6 40676877 40677252 -148602302 - MSTA LTR MaLR 0 428 1 916 37 0 0 chr6 40677252 40677359 -148602195 + MER66A-int LTR ERV1 6570 6676 0 553 218 6 59 chr6 40677422 40677601 -148601953 + MER66A LTR ERV1 110 227 -251 485 176 0 0 chr6 40677701 40677775 -148601779 + MER66B LTR ERV1 413 486 0 2685 110 49 53 chr6 40677775 40677794 -148601760 + L1MA8 LINE L1 5762 5780 -511 570 67 0 0 chr6 40677794 40677869 -148601685 + (TA)n Simple_repeat Simple_repeat 2 76 0 2685 110 49 53 chr6 40677869 40678375 -148601179 + L1MA8 LINE L1 5780 6285 -6 1671 184 14 0 chr6 40678523 40678811 -148600743 + AluJb SINE Alu 1 292 -20 240 208 92 42 chr6 40678818 40678938 -148600616 + L1MEc LINE L1 2151 2276 -4120 4631 105 18 1 chr6 40678979 40679643 -148599911 - L1PB1 LINE L1 -1 6150 5476 13868 188 14 13 chr6 40680207 40683246 -148596308 - L1PB1 LINE L1 -692 5459 2420 294 167 0 17 chr6 40683362 40683422 -148596132 + AluJ/FLAM SINE Alu 1 59 -243 1773 103 4 12 chr6 40683465 40683718 -148595836 + AluSq SINE Alu 55 305 -8 671 205 8 8 chr6 40684010 40684123 -148595431 + FLAM_A SINE Alu 5 120 -182 243 0 0 0 chr6 40684123 40684150 -148595404 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2231 85 3 3 chr6 40684194 40684487 -148595067 + AluY SINE Alu 1 293 -18 2197 113 3 0 chr6 40684492 40684793 -148594761 + AluSg SINE Alu 1 302 -8 2229 92 0 35 chr6 40685239 40685555 -148593999 + AluY SINE Alu 1 305 -6 1644 59 87 0 chr6 40685809 40686028 -148593526 + AluY SINE Alu 59 296 -15 224 316 68 60 chr6 40686035 40686168 -148593386 - L2 LINE L2 -168 3104 2971 419 318 152 31 chr6 40686201 40686659 -148592895 - L2 LINE L2 -459 2855 2333 1894 122 20 14 chr6 40686659 40686954 -148592600 - AluSp SINE Alu -14 299 3 419 318 152 31 chr6 40686954 40686982 -148592572 - L2 LINE L2 -981 2333 2310 482 215 125 28 chr6 40686991 40687135 -148592419 - LTR33 LTR ERVL -361 160 3 1901 82 4 0 chr6 40687191 40687436 -148592118 + AluY SINE Alu 1 246 -65 1944 143 0 25 chr6 40687625 40687939 -148591615 - AluSx SINE Alu -6 306 1 2352 60 10 3 chr6 40688011 40688310 -148591244 - AluY SINE Alu -10 301 1 341 299 34 28 chr6 40688626 40688803 -148590751 - L2 LINE L2 -923 2391 2214 2260 88 7 0 chr6 40689159 40689456 -148590098 - AluSp SINE Alu -14 299 1 2410 84 0 0 chr6 40690126 40690435 -148589119 + AluSx SINE Alu 1 309 -3 42 0 0 0 chr6 40690437 40690479 -148589075 + AT_rich Low_complexity Low_complexity 1 42 0 2338 79 0 3 chr6 40690479 40690783 -148588771 + AluY SINE Alu 1 303 -8 2112 112 0 10 chr6 40692261 40692566 -148586988 - AluSx SINE Alu -10 302 1 188 255 326 0 chr6 40692630 40692728 -148586826 - MIR SINE MIR -16 246 117 228 305 9 19 chr6 40694799 40694904 -148584650 + CT-rich Low_complexity Low_complexity 4 107 0 22 0 0 0 chr6 40695568 40695590 -148583964 + AT_rich Low_complexity Low_complexity 1 22 0 1966 95 95 7 chr6 40696148 40696432 -148583122 - AluSg SINE Alu -1 309 1 373 303 125 7 chr6 40696885 40697037 -148582517 + MIR SINE MIR 19 188 -74 855 131 7 36 chr6 40697769 40697906 -148581648 - FLAM_C SINE Alu 0 133 1 31 0 0 0 chr6 40697906 40697937 -148581617 + AT_rich Low_complexity Low_complexity 1 31 0 218 352 21 7 chr6 40698024 40698169 -148581385 + CT-rich Low_complexity Low_complexity 2 148 0 369 305 31 8 chr6 40698747 40698875 -148580679 + MIR3 SINE MIR 15 145 -63 210 330 19 10 chr6 40701329 40701432 -148578122 + G-rich Low_complexity Low_complexity 2 105 0 1207 272 47 22 chr6 40704654 40705157 -148574397 - L1ME3A LINE L1 -63 6107 5535 680 308 142 41 chr6 40705313 40705940 -148573614 - L2 LINE L2 0 3313 2751 1947 152 0 7 chr6 40705940 40706243 -148573311 + AluJo SINE Alu 1 301 -11 680 308 142 41 chr6 40706243 40706663 -148572891 - L2 LINE L2 -562 2751 2165 266 133 0 0 chr6 40706689 40706734 -148572820 - MER5B DNA MER1_type -15 163 119 403 253 0 0 chr6 40706736 40706835 -148572719 - MER3 DNA MER1_type -76 133 35 2250 98 3 3 chr6 40706846 40707151 -148572403 + AluSx SINE Alu 1 305 -7 421 316 77 37 chr6 40707151 40707412 -148572142 - L2 LINE L2 -1325 1989 1715 2193 102 0 40 chr6 40707417 40707739 -148571815 - AluSx SINE Alu -3 309 1 1791 223 63 98 chr6 40707741 40707931 -148571623 - L1ME3 LINE L1 -12 6150 5955 2180 124 0 0 chr6 40707931 40708238 -148571316 - AluSc SINE Alu -2 307 1 1791 223 63 98 chr6 40708238 40708854 -148570700 - L1ME3 LINE L1 -207 5955 5372 1824 163 3 3 chr6 40708856 40709150 -148570404 + AluJo SINE Alu 3 296 -16 1190 129 29 43 chr6 40709156 40709289 -148570265 + AluSx SINE Alu 5 135 -177 2198 86 3 3 chr6 40709289 40709581 -148569973 + AluY SINE Alu 1 292 -19 1190 129 29 43 chr6 40709581 40709656 -148569898 + AluSx SINE Alu 135 210 -102 301 246 26 70 chr6 40709670 40709775 -148569779 - L1ME3 LINE L1 -781 5381 5280 2190 92 16 0 chr6 40709775 40710078 -148569476 - AluSq SINE Alu -5 308 1 1855 164 10 6 chr6 40710121 40710432 -148569122 - AluJb SINE Alu 0 312 1 685 268 42 65 chr6 40710450 40710473 -148569081 - L1ME3 LINE L1 -1042 5104 5082 2122 126 0 0 chr6 40710473 40710774 -148568780 + AluSx SINE Alu 1 301 -11 685 268 42 65 chr6 40710774 40711104 -148568450 - L1ME3 LINE L1 -1064 5082 4759 606 196 23 60 chr6 40711215 40711348 -148568206 + FLAM_A SINE Alu 1 128 -5 2079 114 7 0 chr6 40711352 40711641 -148567913 + AluSx SINE Alu 7 297 -15 390 291 119 84 chr6 40711740 40712097 -148567457 - L2 LINE L2 0 3313 2893 2201 97 3 0 chr6 40712097 40712420 -148567134 + AluSp SINE Alu 1 324 0 390 291 119 84 chr6 40712420 40712587 -148566967 - L2 LINE L2 -420 2893 2733 366 242 73 73 chr6 40713125 40713249 -148566305 - MER91A DNA MER1_type -3 193 70 556 277 125 40 chr6 40715966 40716342 -148563212 - L3 LINE CR1 -78 1499 1092 246 229 14 0 chr6 40716465 40716535 -148563019 - L1ME4a LINE L1 -6 6115 6045 553 281 120 56 chr6 40716575 40716752 -148562802 - L3 LINE CR1 -730 847 683 2023 126 0 19 chr6 40716752 40717070 -148562484 - AluJb SINE Alu 0 312 1 553 281 120 56 chr6 40717070 40717251 -148562303 - L3 LINE CR1 -894 683 466 368 335 41 46 chr6 40717514 40717711 -148561843 - L1ME4a LINE L1 0 6121 5926 1320 123 0 10 chr6 40718155 40718350 -148561204 - AluSq SINE Alu 0 313 121 1076 191 5 5 chr6 40718577 40718765 -148560789 + MER5A DNA MER1_type 1 188 -1 2102 116 14 0 chr6 40719102 40719395 -148560159 + AluSq SINE Alu 1 297 -16 2461 60 3 0 chr6 40719466 40719766 -148559788 + AluSp SINE Alu 1 301 -12 324 319 53 18 chr6 40720653 40720766 -148558788 + L2 LINE L2 3188 3304 -9 864 217 48 10 chr6 40721138 40721345 -148558209 + MIR SINE MIR 28 242 -20 219 109 43 43 chr6 40722914 40722960 -148556594 + (CCCCAG)n Simple_repeat Simple_repeat 1 46 0 24 77 0 0 chr6 40723209 40723261 -148556293 + GC_rich Low_complexity Low_complexity 1 52 0 300 324 71 19 chr6 40726525 40726735 -148552819 - L2 LINE L2 -203 3069 2849 1704 112 13 69 chr6 40726921 40727224 -148552330 + AluJo SINE Alu 11 296 -16 416 339 149 23 chr6 40727505 40728036 -148551518 - L2 LINE L2 -1104 2210 1613 732 318 5 5 chr6 40728282 40728477 -148551077 - MER91A DNA MER1_type 0 196 2 882 225 43 10 chr6 40730153 40730362 -148549192 + MIR SINE MIR 1 216 -46 2473 74 0 0 chr6 40730363 40730674 -148548880 + AluY SINE Alu 1 311 0 676 195 87 7 chr6 40731990 40732139 -148547415 + MIR SINE MIR 76 236 -26 563 98 0 33 chr6 40732244 40732336 -148547218 + 5S rRNA rRNA 2 90 -31 2186 112 3 6 chr6 40732393 40732706 -148546848 - AluSx SINE Alu 0 312 1 842 46 38 8 chr6 40732717 40732848 -148546706 + (TTTC)n Simple_repeat Simple_repeat 4 138 0 2094 108 0 0 chr6 40732857 40733126 -148546428 - AluSx SINE Alu -43 269 1 269 300 51 87 chr6 40733767 40733859 -148545695 + MIR3 SINE MIR 1 95 -166 2349 103 0 0 chr6 40733859 40734171 -148545383 - AluSx SINE Alu 0 312 1 269 300 51 87 chr6 40734171 40734288 -148545266 + MIR3 SINE MIR 95 203 -58 1611 271 157 23 chr6 40735131 40735891 -148543663 - L2 LINE L2 0 3313 2375 2178 92 3 0 chr6 40735891 40736184 -148543370 + AluSp SINE Alu 1 294 -19 1611 271 157 23 chr6 40736184 40736379 -148543175 - L2 LINE L2 -938 2375 2208 1917 102 40 30 chr6 40736548 40736852 -148542702 + AluSx SINE Alu 2 308 -4 1597 202 39 30 chr6 40737789 40737903 -148541651 - Charlie4a DNA MER1_type -1487 474 363 1990 100 71 4 chr6 40737903 40738183 -148541371 - AluSq SINE Alu -14 299 1 1597 202 39 30 chr6 40738183 40738504 -148541050 - Charlie4a DNA MER1_type -1598 363 35 1939 122 40 14 chr6 40739005 40739301 -148540253 + AluSg SINE Alu 7 310 0 668 215 71 18 chr6 40741413 40741638 -148537916 - L1ME1 LINE L1 -119 6047 5806 303 226 164 7 chr6 40743519 40743665 -148535889 - L1MC5 LINE L1 -6 7955 7787 955 30 15 15 chr6 40743684 40743815 -148535739 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 1751 145 14 21 chr6 40743817 40744100 -148535454 - AluJb SINE Alu -31 281 1 1274 198 67 0 chr6 40744116 40744444 -148535110 - L1MB7 LINE L1 -9 6175 5826 279 0 0 0 chr6 40744461 40744492 -148535062 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1631 182 0 7 chr6 40744492 40744772 -148534782 - AluJo SINE Alu -24 288 11 328 239 49 84 chr6 40744834 40744942 -148534612 - L1MC5 LINE L1 -175 7786 7676 1957 121 6 29 chr6 40744942 40745061 -148534493 + AluSx SINE Alu 1 121 -191 183 42 0 0 chr6 40745061 40745085 -148534469 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1957 121 6 29 chr6 40745085 40745280 -148534274 + AluSx SINE Alu 121 308 -4 328 239 49 84 chr6 40745280 40745434 -148534120 - L1MC5 LINE L1 -285 7676 7533 757 279 5 0 chr6 40745441 40745631 -148533923 - L2 LINE L2 -239 3074 2884 265 272 71 112 chr6 40746294 40746380 -148533174 + MIR SINE MIR 20 97 -165 2291 97 0 3 chr6 40746380 40746688 -148532866 + AluSx SINE Alu 3 309 -3 265 272 71 112 chr6 40746688 40746770 -148532784 + MIR SINE MIR 97 181 -81 2209 107 0 25 chr6 40747468 40747786 -148531768 - AluSx SINE Alu -2 310 1 2215 71 7 0 chr6 40747794 40748118 -148531436 - AluY SINE Alu 0 326 1 557 294 165 47 chr6 40749794 40749953 -148529601 + L1ME4a LINE L1 5712 5851 -270 2121 112 7 0 chr6 40749953 40750248 -148529306 + AluSx SINE Alu 1 297 -15 557 294 165 47 chr6 40750248 40750452 -148529102 + L1ME4a LINE L1 5851 6118 -3 2345 91 10 0 chr6 40750530 40750839 -148528715 - AluSp SINE Alu -1 312 1 2290 115 0 0 chr6 40751443 40751755 -148527799 - AluSx SINE Alu 0 312 1 328 351 56 16 chr6 40752030 40752281 -148527273 - L1MB7 LINE L1 -297 5824 5564 204 281 56 11 chr6 40753137 40753226 -148526328 - L2 LINE L2 -284 2988 2896 216 271 77 82 chr6 40753412 40753582 -148525972 - L2 LINE L2 -653 2661 2493 394 245 49 10 chr6 40755172 40755274 -148524280 - MER5A DNA MER1_type -80 109 4 247 321 109 60 chr6 40755489 40755545 -148524009 - L2 LINE L2 0 3272 3220 2525 224 63 0 chr6 40755545 40756120 -148523434 - MER90 LTR ERV1 0 614 4 247 321 109 60 chr6 40756120 40756430 -148523124 - L2 LINE L2 -52 3220 2888 236 235 71 31 chr6 40756610 40756708 -148522846 - L2 LINE L2 -653 2661 2560 257 195 168 121 chr6 40758325 40758411 -148521143 - MER5A DNA MER1_type -21 168 71 2210 106 3 3 chr6 40758411 40758722 -148520832 - AluY SINE Alu 0 311 1 257 195 168 121 chr6 40758722 40758784 -148520770 - MER5A DNA MER1_type -118 71 13 1791 168 54 3 chr6 40758793 40759144 -148520410 - L1MB3 LINE L1 -2 6181 5813 830 147 0 22 chr6 40759144 40759270 -148520284 - FLAM_C SINE Alu -187 125 1 736 180 7 13 chr6 40759270 40759420 -148520134 - L1MB3 LINE L1 -340 5831 5683 199 267 67 38 chr6 40759999 40760104 -148519450 - L2 LINE L2 -653 2661 2554 472 348 48 5 chr6 40761908 40762118 -148517436 + MIR SINE MIR 12 230 -32 433 311 30 7 chr6 40763357 40763492 -148516062 + MIR SINE MIR 16 153 -55 546 146 27 64 chr6 40771954 40772064 -148507490 + FLAM_C SINE Alu 35 140 -3 201 158 0 0 chr6 40772430 40772468 -148507086 + (CAG)n Simple_repeat Simple_repeat 1 38 0 352 214 24 0 chr6 40772955 40773039 -148506515 - MER94 DNA DNA -16 118 33 268 317 50 20 chr6 40773078 40773179 -148506375 - MIR SINE MIR -27 235 132 550 329 93 66 chr6 40774365 40774730 -148504824 + L2 LINE L2 2898 3272 0 217 365 187 29 chr6 40774952 40775193 -148504361 + L3 LINE CR1 674 952 -625 188 291 35 23 chr6 40777466 40777552 -148502002 + L2 LINE L2 2174 2260 -1054 808 154 0 22 chr6 40778027 40778163 -148501391 + FLAM_C SINE Alu 1 133 0 194 306 16 97 chr6 40779786 40779910 -148499644 - L2 LINE L2 -595 2719 2606 336 281 167 9 chr6 40780588 40780702 -148498852 - MIR SINE MIR -59 203 72 221 296 17 35 chr6 40785107 40785222 -148494332 + C-rich Low_complexity Low_complexity 2 114 0 185 271 127 25 chr6 40787047 40787165 -148492389 + L2 LINE L2 3141 3270 -2 201 39 0 0 chr6 40789075 40789101 -148490453 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 471 194 16 8 chr6 40792496 40792625 -148486929 + CT-rich Low_complexity Low_complexity 3 132 0 1452 167 59 42 chr6 40793350 40793637 -148485917 + AluJo SINE Alu 1 292 -20 2089 135 20 0 chr6 40793699 40793996 -148485558 + AluSx SINE Alu 1 303 -9 2030 117 13 30 chr6 40794000 40794138 -148485416 + AluSx SINE Alu 1 140 -172 2402 77 3 26 chr6 40794138 40794448 -148485106 + AluY SINE Alu 1 303 -8 2030 117 13 30 chr6 40794448 40794608 -148484946 + AluSx SINE Alu 140 294 -18 5861 76 25 40 chr6 40794748 40796131 -148483423 + SVA Other Other 52 1009 -377 749 71 20 0 chr6 40796184 40796283 -148483271 + AluSq/x SINE Alu 32 132 -180 2221 114 0 7 chr6 40796286 40796592 -148482962 + AluSc SINE Alu 1 304 -5 1333 206 0 114 chr6 40797001 40797351 -148482203 - AluSx SINE Alu -2 310 1 2023 132 17 0 chr6 40797488 40797784 -148481770 - AluJb SINE Alu -11 301 1 351 340 19 44 chr6 40797861 40798020 -148481534 - MER5A DNA MER1_type 0 189 35 240 294 171 40 chr6 40798270 40798569 -148480985 + L2 LINE L2 2153 2490 -824 313 222 214 34 chr6 40805166 40805283 -148474271 + MIR3 SINE MIR 55 192 -16 1756 185 0 31 chr6 40805381 40805700 -148473854 + AluJb SINE Alu 1 309 -3 259 305 19 38 chr6 40806077 40806182 -148473372 - MIR SINE MIR -25 237 135 304 289 90 60 chr6 40806583 40806639 -148472915 - L1ME LINE L1 -509 5657 5604 2388 100 0 3 chr6 40806639 40806949 -148472605 - AluSc SINE Alu 0 309 1 304 289 90 60 chr6 40806949 40807224 -148472330 - L1ME LINE L1 -562 5604 5316 531 306 0 0 chr6 40807225 40807346 -148472208 - MIR SINE MIR -128 134 14 375 336 0 31 chr6 40810776 40810904 -148468650 + MER91B DNA MER1_type 12 135 -55 344 318 11 0 chr6 40810904 40810992 -148468562 + MER91B DNA MER1_type 100 188 -2 210 311 84 42 chr6 40811922 40812041 -148467513 - MER5B DNA MER1_type -54 124 1 250 326 54 8 chr6 40813555 40813684 -148465870 + L2 LINE L2 2120 2254 -1060 244 337 102 0 chr6 40815183 40815281 -148464273 + MIR3 SINE MIR 95 202 -6 1372 120 0 57 chr6 40815411 40815620 -148463934 + AluSx SINE Alu 1 197 -115 2293 115 3 0 chr6 40815772 40816077 -148463477 - AluSx SINE Alu -6 306 1 1969 195 55 40 chr6 40816079 40816595 -148462959 - L1MDa LINE L1 -5315 1228 684 1711 218 66 2 chr6 40816604 40817026 -148462528 - L1MDa LINE L1 -6058 482 34 418 208 30 10 chr6 40817034 40817135 -148462419 + L1M4 LINE L1 5565 5667 -511 2601 76 0 3 chr6 40817135 40817449 -148462105 + AluSp SINE Alu 1 313 0 798 380 121 19 chr6 40818679 40819477 -148460077 - L2 LINE L2 0 3313 2325 688 320 117 7 chr6 40820728 40821165 -148458389 - L2 LINE L2 -1009 2305 1821 231 36 0 0 chr6 40821304 40821332 -148458222 + (TA)n Simple_repeat Simple_repeat 2 29 0 553 287 90 97 chr6 40821393 40821972 -148457582 + L1MDa LINE L1 1369 2138 -1315 2904 117 29 22 chr6 40821972 40822461 -148457093 + L1MA3 LINE L1 5814 6305 0 553 287 90 97 chr6 40822461 40822813 -148456741 + L1MDa LINE L1 2138 2491 -962 1213 208 23 40 chr6 40822815 40823118 -148456436 + AluJb SINE Alu 1 298 -4 220 189 0 0 chr6 40823120 40823157 -148456397 + GA-rich Low_complexity Low_complexity 6 42 0 415 355 25 39 chr6 40823308 40823458 -148456096 + L1MDa LINE L1 2373 2519 -4202 2727 0 0 0 chr6 40823458 40823741 -148455813 - AluYa5 SINE Alu -12 299 17 415 355 25 39 chr6 40823741 40823869 -148455685 + L1MDa LINE L1 2519 2647 -4074 1177 286 100 100 chr6 40823893 40823999 -148455555 + L1MDa LINE L1 2594 2699 -3841 2199 132 3 0 chr6 40823999 40824294 -148455260 + AluSq SINE Alu 1 296 -17 1177 286 100 100 chr6 40824294 40825194 -148454360 + L1MDa LINE L1 2698 3660 -2880 213 121 0 0 chr6 40825317 40825350 -148454204 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 936 216 46 63 chr6 40825507 40825858 -148453696 - MER87 LTR ERV1 -1 540 196 1625 96 0 0 chr6 40826277 40826475 -148453079 + AluSx SINE Alu 1 198 -114 4293 72 49 8 chr6 40826475 40827085 -148452469 - PABL_A LTR ERV1 -25 635 1 316 172 71 50 chr6 40827827 40827926 -148451628 - L1M4c LINE L1 -5336 1048 948 1024 198 66 52 chr6 40828393 40828853 -148450701 + L1MDa LINE L1 2524 2985 -3555 910 296 79 35 chr6 40828853 40829257 -148450297 - L2 LINE L2 -303 3010 2590 2024 155 3 7 chr6 40829594 40829898 -148449656 - AluJo SINE Alu -9 303 1 1044 191 108 0 chr6 40829898 40830073 -148449481 - MER58B DNA MER1_type -2118 302 95 279 0 0 0 chr6 40830073 40830104 -148449450 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1044 191 108 0 chr6 40830104 40830159 -148449395 - MER58B DNA MER1_type -2325 95 47 1714 149 35 24 chr6 40830338 40830626 -148448928 - AluJo SINE Alu -16 296 6 1951 147 17 3 chr6 40830733 40831033 -148448521 + AluJb SINE Alu 1 304 -8 909 135 0 0 chr6 40832299 40832425 -148447129 - FLAM_C SINE Alu -7 126 1 655 283 74 13 chr6 40832735 40832965 -148446589 - MIR SINE MIR -16 246 3 2330 94 0 13 chr6 40833466 40833765 -148445789 - AluSq SINE Alu -18 295 1 180 0 0 0 chr6 40834202 40834222 -148445332 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 24 32 0 0 chr6 40834985 40835016 -148444538 + AT_rich Low_complexity Low_complexity 1 31 0 918 101 7 50 chr6 40835399 40835538 -148444016 + FLAM_C SINE Alu 1 133 0 1111 51 0 0 chr6 40835995 40836132 -148443422 + L1PA3 LINE L1 6016 6152 -3 32 0 0 0 chr6 40836132 40836164 -148443390 + AT_rich Low_complexity Low_complexity 1 32 0 223 320 96 29 chr6 40837149 40837421 -148442133 + L2 LINE L2 1457 1746 -1568 487 269 9 0 chr6 40837603 40837711 -148441843 + MIR SINE MIR 5 113 -149 1966 123 39 0 chr6 40837787 40838071 -148441483 + AluSx SINE Alu 1 295 -17 714 117 13 84 chr6 40838181 40838286 -148441268 + L1MB7 LINE L1 6031 6123 -61 2233 101 0 7 chr6 40838286 40838583 -148440971 - AluSx SINE Alu -17 295 1 714 117 13 84 chr6 40838583 40838631 -148440923 + L1MB7 LINE L1 6123 6173 -11 258 284 43 17 chr6 40838631 40838747 -148440807 - L2 LINE L2 -1490 1824 1706 799 228 93 36 chr6 40838764 40838851 -148440703 - L1MC5 LINE L1 -47 7914 7833 2076 117 0 4 chr6 40838851 40839132 -148440422 + AluSx SINE Alu 16 295 -17 799 228 93 36 chr6 40839132 40839199 -148440355 - L1MC5 LINE L1 -128 7833 7771 339 25 0 0 chr6 40839199 40839239 -148440315 + (ATATG)n Simple_repeat Simple_repeat 2 41 0 799 228 93 36 chr6 40839239 40839469 -148440085 - L1MC5 LINE L1 -190 7771 7507 701 183 6 32 chr6 40839476 40839644 -148439910 - L1MC3 LINE L1 -1 7765 6159 2289 101 0 0 chr6 40839644 40839931 -148439623 + AluSx SINE Alu 1 287 -25 355 167 122 0 chr6 40939937 40940027 -148339527 + L2 LINE L2 643 743 -2571 4409 261 138 26 chr6 40940044 40940981 -148338573 + L2 LINE L2 971 1802 -1512 1746 176 90 9 chr6 40940981 40941327 -148338227 + MLT1A2 LTR MaLR 1 374 0 4409 261 138 26 chr6 40941327 40942014 -148337540 + L2 LINE L2 1802 2777 -537 985 197 19 5 chr6 40942041 40942249 -148337305 - MER20 DNA MER1_type -8 211 1 2702 132 2 14 chr6 40942262 40942686 -148336868 - L1P3 LINE L1 -6042 419 1 1258 141 4 40 chr6 40942694 40942943 -148336611 - L1MA5 LINE L1 -247 6053 5814 * 3027 259 106 18 chr6 40942935 40944201 -148335353 - L1M4c LINE L1 -3940 2444 1040 2853 19 0 0 chr6 40944201 40944512 -148335042 - AluYa5 SINE Alu 0 311 1 3027 259 106 18 chr6 40944512 40944660 -148334894 - L1M4c LINE L1 -5344 1040 906 3829 252 62 7 chr6 40944674 40946021 -148333533 + L1M4 LINE L1 2220 3639 -2507 2361 103 3 0 chr6 40946622 40946922 -148332632 + AluSp SINE Alu 1 301 -12 1445 230 18 0 chr6 40947913 40948256 -148331298 + L1MB5 LINE L1 5817 6165 -9 1980 167 27 3 chr6 40949384 40949749 -148329805 - MLT1B LTR MaLR -16 374 1 180 222 256 33 chr6 40949756 40949846 -148329708 - MIR SINE MIR -124 138 29 524 270 0 0 chr6 40949934 40950045 -148329509 + MER81 DNA DNA 3 113 -1 195 302 222 5 chr6 40950459 40950648 -148328906 - L2 LINE L2 -239 3074 2845 2329 126 113 13 chr6 40952146 40952535 -148327019 - MSTA LTR MaLR 0 428 1 210 318 47 28 chr6 40952639 40952746 -148326808 - MIR SINE MIR -10 252 144 313 266 11 11 chr6 40952876 40952970 -148326584 - L1M4 LINE L1 -1308 4838 4745 561 269 91 47 chr6 40953001 40953315 -148326239 + L1MCa LINE L1 1474 1990 -4513 1073 233 26 72 chr6 40953320 40953697 -148325857 - L1M4 LINE L1 -2002 4144 3785 1672 257 56 13 chr6 40953752 40954358 -148325196 + L1M4 LINE L1 4650 5281 -865 1782 180 3 22 chr6 40954878 40955195 -148324359 - AluJb SINE Alu -1 311 1 180 245 0 0 chr6 40955528 40955581 -148323973 + (CA)n Simple_repeat Simple_repeat 1 53 0 260 185 0 15 chr6 40955793 40955858 -148323696 + GA-rich Low_complexity Low_complexity 4 67 0 936 235 35 0 chr6 40957037 40957237 -148322317 - MER3 DNA MER1_type 0 209 3 900 242 53 25 chr6 40957772 40958016 -148321538 - MIR SINE MIR 0 262 12 2368 81 14 0 chr6 40958228 40958524 -148321030 + AluSp SINE Alu 1 300 -13 1399 183 88 14 chr6 40958712 40958997 -148320557 - AluJb SINE Alu -6 306 1 594 144 0 0 chr6 40959406 40959496 -148320058 + FRAM SINE Alu 64 153 -23 382 250 56 7 chr6 40959705 40959849 -148319705 - L1MC4a LINE L1 -1936 5872 5722 300 311 25 8 chr6 40959889 40960011 -148319543 - L2 LINE L2 0 3313 3190 601 213 48 132 chr6 40960129 40960195 -148319359 - MER45C DNA AcHobo -629 952 882 731 169 0 0 chr6 40960195 40960313 -148319241 + FLAM_C SINE Alu 1 118 -15 601 213 48 132 chr6 40960313 40960422 -148319132 - MER45C DNA AcHobo -699 882 806 2581 61 0 3 chr6 40960422 40960734 -148318820 - AluY SINE Alu 0 311 1 601 213 48 132 chr6 40960734 40960830 -148318724 - MER45C DNA AcHobo -775 806 703 1260 211 11 15 chr6 40960904 40961174 -148318380 - MER45C DNA AcHobo -684 269 1 410 305 93 7 chr6 40961255 40961406 -148318148 + MIR SINE MIR 97 260 -2 2357 84 10 3 chr6 40961741 40962052 -148317502 - AluSq SINE Alu 0 313 1 2625 58 0 6 chr6 40962060 40962373 -148317181 - AluY SINE Alu 0 311 1 479 225 107 53 chr6 40962673 40962860 -148316694 + L3 LINE CR1 1265 1461 -116 399 257 47 74 chr6 40963729 40963764 -148315790 + MIR SINE MIR 84 118 -144 2538 60 7 3 chr6 40963764 40964066 -148315488 - AluSp SINE Alu -10 303 1 399 257 47 74 chr6 40964066 40964178 -148315376 + MIR SINE MIR 118 227 -35 276 231 130 0 chr6 40964219 40964327 -148315227 + L2 LINE L2 3192 3313 0 2103 88 41 17 chr6 40964502 40964796 -148314758 - AluSc SINE Alu -8 301 1 1065 66 0 29 chr6 40964796 40964933 -148314621 - AluSg SINE Alu -176 134 2 325 258 31 47 chr6 40965407 40965535 -148314019 - MIR SINE MIR -73 189 64 1290 181 0 5 chr6 40965999 40966203 -148313351 + AluSx SINE Alu 1 203 -109 2064 76 36 11 chr6 40966376 40966674 -148312880 - AluY SINE Alu 0 305 1 1702 153 35 0 chr6 40966760 40967014 -148312540 + AluSx SINE Alu 1 263 -49 225 65 0 0 chr6 40967017 40967048 -148312506 + (TA)n Simple_repeat Simple_repeat 2 32 0 2254 121 0 3 chr6 40967115 40967420 -148312134 - AluSg SINE Alu -6 304 1 200 35 35 0 chr6 40967421 40967450 -148312104 + (TTC)n Simple_repeat Simple_repeat 1 30 0 715 169 73 0 chr6 40967450 40967574 -148311980 - FLAM_C SINE Alu 0 133 1 1113 200 140 4 chr6 40967683 40967814 -148311740 + AluSp SINE Alu 1 113 -190 1818 113 20 4 chr6 40967814 40968062 -148311492 + AluSx SINE Alu 1 252 -60 1113 200 140 4 chr6 40968062 40968195 -148311359 + AluSp SINE Alu 113 301 -2 2163 123 14 0 chr6 40968404 40968697 -148310857 + AluSx SINE Alu 1 297 -15 194 229 36 84 chr6 40968736 40968819 -148310735 - L2 LINE L2 -1884 1430 1352 1819 155 54 0 chr6 40969138 40969440 -148310114 + AluSx SINE Alu 1 317 0 410 299 79 6 chr6 40970049 40970226 -148309328 + MIR SINE MIR 73 262 0 277 268 37 37 chr6 40970442 40970524 -148309030 - L2 LINE L2 -64 3249 3168 1310 158 10 5 chr6 40970565 40970774 -148308780 - AluJb SINE Alu -15 297 88 291 114 0 0 chr6 40970783 40970827 -148308727 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 1201 92 7 0 chr6 40970849 40971001 -148308553 - AluSx SINE Alu -155 157 5 292 91 0 36 chr6 40971025 40971080 -148308474 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 317 355 103 0 chr6 40971124 40971358 -148308196 - L2 LINE L2 -160 3112 2855 * 413 246 77 23 chr6 40971348 40971478 -148308076 + MIR SINE MIR 15 151 -111 1816 121 7 85 chr6 40971881 40972215 -148307339 - AluSx SINE Alu 0 310 1 526 174 97 121 chr6 40972330 40972537 -148307017 + MER46C DNA MER2_type 1 202 -136 2183 102 17 0 chr6 40972914 40973209 -148306345 - AluSp SINE Alu -12 301 2 1810 132 108 41 chr6 40973653 40973995 -148305559 + MLT1A1 LTR MaLR 1 365 0 2402 72 3 16 chr6 40974072 40974376 -148305178 - AluY SINE Alu -11 300 1 2352 63 0 3 chr6 40974776 40975089 -148304465 + AluY SINE Alu 1 312 0 242 375 42 7 chr6 40975177 40975321 -148304233 + MIR SINE MIR 47 195 -67 2175 79 10 26 chr6 40975485 40975839 -148303715 + AluSg SINE Alu 1 310 0 2258 120 0 19 chr6 40976427 40976743 -148302811 + AluSq SINE Alu 1 310 -3 1778 96 12 20 chr6 40977881 40978131 -148301423 - AluSp SINE Alu -6 307 60 1992 209 95 62 chr6 40978134 40978726 -148300828 + MER20B DNA MER1_type 84 702 -81 1920 102 44 18 chr6 40978726 40979001 -148300553 - AluSx SINE Alu -17 295 14 1992 209 95 62 chr6 40979001 40979082 -148300472 + MER20B DNA MER1_type 702 779 -4 378 0 0 0 chr6 40979235 40979277 -148300277 + (CA)n Simple_repeat Simple_repeat 2 43 0 235 248 0 75 chr6 40980043 40980176 -148299378 + C-rich Low_complexity Low_complexity 4 126 0 249 182 15 45 chr6 40980273 40980339 -148299215 + G-rich Low_complexity Low_complexity 4 67 0 26 0 0 0 chr6 40980903 40980929 -148298625 + GC_rich Low_complexity Low_complexity 1 26 0 549 247 29 47 chr6 40983647 40983817 -148295737 + MER69 DNA AcHobo 1 167 -1059 316 147 160 0 chr6 40983819 40983894 -148295660 + MER69 DNA AcHobo 2438 2524 -2 309 269 0 67 chr6 40985007 40985156 -148294398 + CT-rich Low_complexity Low_complexity 2 140 0 * 331 335 0 22 chr6 40985050 40985232 -148294322 + C-rich Low_complexity Low_complexity 1 178 0 339 217 14 14 chr6 40987116 40987185 -148292369 - MER5A DNA MER1_type -2 187 119 252 93 37 19 chr6 40990368 40990422 -148289132 + GA-rich Low_complexity Low_complexity 1 55 0 506 274 67 18 chr6 40993016 40993180 -148286374 - MIR SINE MIR -78 184 13 742 165 8 15 chr6 40993597 40993730 -148285824 + FLAM_C SINE Alu 1 132 -1 890 226 16 5 chr6 40994081 40994267 -148285287 - MER5A DNA MER1_type 0 189 2 856 158 28 79 chr6 40994315 40994492 -148285062 + MER20 DNA MER1_type 51 218 -1 725 251 63 26 chr6 40995217 40995408 -148284146 + MIR SINE MIR 64 261 -1 194 330 102 53 chr6 40995469 40995653 -148283901 - L2 LINE L2 -837 2477 2275 2259 104 3 0 chr6 40995653 40995962 -148283592 + AluSg SINE Alu 1 310 0 194 330 102 53 chr6 40995962 40996041 -148283513 - L2 LINE L2 -1039 2275 2201 268 306 200 19 chr6 40996067 40996227 -148283327 - MIR SINE MIR -25 237 49 1131 30 0 0 chr6 40996254 40996386 -148283168 - AluY SINE Alu -179 132 1 1261 163 21 118 chr6 40996386 40996551 -148283003 - AluJo SINE Alu -1 301 122 1925 145 0 3 chr6 40996551 40996848 -148282706 - AluSg SINE Alu -14 296 1 1261 163 21 118 chr6 40996848 40996860 -148282694 - AluJo SINE Alu -180 122 110 2012 101 0 39 chr6 40996860 40997031 -148282523 - AluSg SINE Alu -16 294 139 2295 76 3 0 chr6 40997031 40997332 -148282222 - AluSp SINE Alu -11 302 1 2012 101 0 39 chr6 40997332 40997466 -148282088 - AluSg SINE Alu -171 139 1 1261 163 21 118 chr6 40997466 40997619 -148281935 - AluJo SINE Alu -192 110 2 2031 123 7 0 chr6 40997623 40997923 -148281631 - AluSx SINE Alu -10 302 1 1801 141 7 26 chr6 40997944 40998248 -148281306 - AluSx SINE Alu -14 298 1 1808 134 32 0 chr6 40998259 40998543 -148281011 - L1MC1 LINE L1 -13 6320 6028 214 175 25 0 chr6 40998793 40998833 -148280721 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 223 363 35 18 chr6 40998970 40999083 -148280471 - MIR SINE MIR -67 141 27 237 345 78 9 chr6 41000265 41000381 -148279173 - MIR3 SINE MIR -7 201 78 1975 104 3 54 chr6 41000936 41001252 -148278302 + AluSg SINE Alu 1 300 -10 254 313 127 12 chr6 41001887 41002053 -148277501 + L3b LINE CR1 1311 1495 -88 21 36 0 0 chr6 41002777 41002805 -148276749 + AT_rich Low_complexity Low_complexity 1 28 0 786 176 7 7 chr6 41002805 41002947 -148276607 - L1PB4 LINE L1 0 6156 6015 214 284 0 30 chr6 41003793 41003860 -148275694 + CT-rich Low_complexity Low_complexity 2 66 0 276 357 74 11 chr6 41005428 41005697 -148273857 - L2 LINE L2 -181 3091 2806 462 262 41 0 chr6 41007840 41007962 -148271592 - MIR SINE MIR -50 212 86 479 233 71 36 chr6 41008809 41009152 -148270402 - LTR16A1 LTR ERVL -1 456 22 207 194 42 28 chr6 41009435 41009507 -148270047 + CT-rich Low_complexity Low_complexity 5 77 0 207 234 47 0 chr6 41009707 41009771 -148269783 + G-rich Low_complexity Low_complexity 4 70 0 473 309 123 18 chr6 41011202 41011422 -148268132 + MIR SINE MIR 12 254 -8 2240 87 23 0 chr6 41012066 41012366 -148267188 + AluSg1 SINE Alu 1 307 -2 797 216 181 12 chr6 41012582 41012841 -148266713 - Cheshire DNA MER1_type -55 2365 2063 261 139 0 0 chr6 41012911 41012954 -148266600 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr6 41012957 41012978 -148266576 + AT_rich Low_complexity Low_complexity 1 21 0 1027 267 156 51 chr6 41013558 41014089 -148265465 - MLT1G1 LTR MaLR -8 587 1 454 217 47 36 chr6 41014775 41014964 -148264590 - MER34C LTR ERV1 0 542 368 2097 116 0 0 chr6 41014965 41015266 -148264288 + AluSx SINE Alu 1 301 -11 1447 182 4 0 chr6 41015280 41015522 -148264032 - Tigger2 DNA MER2_type -1 2717 2475 3087 141 71 18 chr6 41015576 41016059 -148263495 - Tigger2 DNA MER2_type -1955 763 244 1500 174 4 4 chr6 41016059 41016323 -148263231 - AluJb SINE Alu -15 297 34 3087 141 71 18 chr6 41016323 41016399 -148263155 - Tigger2 DNA MER2_type -2474 244 174 4907 109 52 29 chr6 41016400 41017216 -148262338 - MER4D LTR ERV1 0 903 1 1948 100 14 7 chr6 41017233 41017534 -148262020 - AluY SINE Alu 0 303 1 1583 159 0 0 chr6 41017553 41017810 -148261744 - AluJb SINE Alu -55 257 1 714 170 59 0 chr6 41017812 41017947 -148261607 - Tigger2 DNA MER2_type -2563 155 13 667 235 67 48 chr6 41018016 41018331 -148261223 - MER34C LTR ERV1 -228 357 37 981 168 37 0 chr6 41018465 41018637 -148260917 - AluSg/x SINE Alu -3 309 128 198 0 0 0 chr6 41018637 41018659 -148260895 + (TTA)n Simple_repeat Simple_repeat 2 23 0 981 168 37 0 chr6 41018659 41018677 -148260877 - AluSg/x SINE Alu -184 128 112 860 239 11 6 chr6 41019004 41019184 -148260370 - LTR39 LTR ERV1 0 783 603 4125 138 67 3 chr6 41019207 41019875 -148259679 - MER50 LTR ERV1 -11 723 13 3317 147 27 52 chr6 41019884 41019906 -148259648 - LTR39 LTR ERV1 -165 618 597 1763 181 0 0 chr6 41019906 41020209 -148259345 + AluJb SINE Alu 1 303 -9 3317 147 27 52 chr6 41020209 41020278 -148259276 - LTR39 LTR ERV1 -186 597 528 1970 100 14 17 chr6 41020278 41020569 -148258985 - AluY SINE Alu -21 290 1 3317 147 27 52 chr6 41020569 41020650 -148258904 - LTR39 LTR ERV1 -255 528 446 1112 194 163 4 chr6 41020650 41020908 -148258646 + AluJo SINE Alu 1 299 -3 3317 147 27 52 chr6 41020908 41021367 -148258187 - LTR39 LTR ERV1 -337 446 1 1976 86 32 18 chr6 41021981 41022260 -148257294 - AluSg SINE Alu -27 283 1 246 105 0 0 chr6 41022606 41022644 -148256910 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 671 207 126 6 chr6 41022951 41023125 -148256429 + MIR SINE MIR 16 210 -52 2214 113 9 14 chr6 41023129 41023475 -148256079 + MER47A DNA MER2_type 23 366 0 268 350 50 0 chr6 41023827 41023927 -148255627 + MIR SINE MIR 31 135 -73 262 246 18 0 chr6 41025629 41025686 -148253868 - L2 LINE L2 0 3313 3256 240 211 18 35 chr6 41026208 41026265 -148253289 - L2 LINE L2 -191 3081 3026 23 33 0 0 chr6 41026581 41026611 -148252943 + AT_rich Low_complexity Low_complexity 1 30 0 2098 113 17 0 chr6 41026742 41027043 -148252511 - AluSx SINE Alu -6 306 1 799 182 31 0 chr6 41027073 41027232 -148252322 - L1MB7 LINE L1 -16 6168 6005 213 294 29 0 chr6 41027428 41027496 -148252058 + CT-rich Low_complexity Low_complexity 3 72 0 213 148 204 0 chr6 41027520 41027574 -148251980 - L2 LINE L2 -3 3310 3246 384 333 60 0 chr6 41027681 41027831 -148251723 - MIR SINE MIR -72 190 32 484 287 64 35 chr6 41028102 41028304 -148251250 - MER63A DNA MER1_type -2 208 1 392 328 25 8 chr6 41028325 41028447 -148251107 - MIR SINE MIR -108 154 31 851 330 71 21 chr6 41029134 41029513 -148250041 + ERVL LTR ERVL 2122 2519 -3245 2133 112 7 0 chr6 41029552 41029848 -148249706 - AluSg SINE Alu -12 298 1 676 258 0 19 chr6 41030016 41030171 -148249383 + MER63 DNA MER1_type 674 825 -237 813 225 115 16 chr6 41031022 41031266 -148248288 + MER63 DNA MER1_type 793 1060 0 277 390 12 0 chr6 41031285 41031454 -148248100 + ERVL LTR ERVL 2737 2907 -2857 270 200 0 0 chr6 41031518 41031563 -148247991 + MER63 DNA MER1_type 763 807 -254 2386 318 42 57 chr6 41031766 41032387 -148247167 + ERVL LTR ERVL 2960 3589 -2065 1742 244 72 17 chr6 41032387 41032911 -148246643 - MLT1H1 LTR MaLR 0 555 3 2386 318 42 57 chr6 41032911 41033630 -148245924 + ERVL LTR ERVL 3589 4279 -1375 2824 231 82 43 chr6 41033730 41033768 -148245786 - MER21B LTR ERV1 -48 815 780 2250 69 0 3 chr6 41033768 41034094 -148245460 - AluY SINE Alu 0 325 1 2824 231 82 43 chr6 41034094 41034820 -148244734 - MER21B LTR ERV1 -83 780 19 473 228 0 22 chr6 41034842 41034934 -148244620 - MER21B LTR ERV1 -773 90 1 204 40 0 0 chr6 41035373 41035398 -148244156 + (CA)n Simple_repeat Simple_repeat 2 26 0 860 249 6 6 chr6 41035912 41036089 -148243465 - MER8 DNA MER2_type -62 177 1 291 328 47 31 chr6 41036090 41036218 -148243336 - L2 LINE L2 -12 3301 3172 303 359 82 27 chr6 41036269 41036598 -148242956 - L2 LINE L2 -337 2977 2631 1246 282 55 10 chr6 41036598 41036981 -148242573 + MLT1I LTR MaLR 3 402 -7 234 308 48 29 chr6 41037534 41037638 -148241916 + MIR SINE MIR 25 130 -78 2364 81 3 0 chr6 41037713 41038021 -148241533 + AluSx SINE Alu 1 309 -3 26 30 0 0 chr6 41038146 41038179 -148241375 + AT_rich Low_complexity Low_complexity 1 33 0 180 321 0 0 chr6 41039673 41039729 -148239825 - L2 LINE L2 -1 3312 3257 903 263 29 24 chr6 41040310 41040751 -148238803 - L1MD3 LINE L1 -1 8041 7610 194 100 0 0 chr6 41040995 41041025 -148238529 - L2 LINE L2 -217 3055 3026 682 309 92 0 chr6 41041887 41042104 -148237450 - MIR SINE MIR -6 256 20 477 267 96 41 chr6 41042379 41042525 -148237029 - MIR SINE MIR -80 182 29 445 228 189 0 chr6 41043005 41043132 -148236422 - L1ME2 LINE L1 -9 6155 6005 523 206 37 15 chr6 41043139 41043275 -148236279 - L1ME2 LINE L1 -213 5951 5813 1773 174 0 3 chr6 41043289 41043593 -148235961 + AluJo SINE Alu 3 305 -7 234 236 0 0 chr6 41043598 41043653 -148235901 - L1ME3 LINE L1 -8 6154 6100 677 68 0 78 chr6 41043660 41043763 -148235791 + AluJb SINE Alu 209 303 -9 839 243 80 21 chr6 41043788 41044027 -148235527 + L1ME2 LINE L1 5903 6155 -9 1688 157 64 0 chr6 41044036 41044316 -148235238 - AluJo SINE Alu -14 298 1 2018 199 79 49 chr6 41044323 41044514 -148235040 - L1ME3 LINE L1 -269 5895 5711 1625 129 8 8 chr6 41044514 41044770 -148234784 + AluJb SINE Alu 5 260 -52 759 78 0 0 chr6 41044776 41044879 -148234675 + (GAA)n Simple_repeat Simple_repeat 2 104 0 2018 199 79 49 chr6 41044879 41045289 -148234265 - L1ME3 LINE L1 -457 5707 5269 1588 251 52 12 chr6 41045304 41045802 -148233752 - L1MC4a LINE L1 -585 7223 6706 1650 151 0 4 chr6 41045803 41046062 -148233492 - Tigger2 DNA MER2_type 0 2718 2461 3612 133 111 32 chr6 41046128 41046314 -148233240 - Tigger2 DNA MER2_type -1975 743 573 1931 113 20 17 chr6 41046314 41046615 -148232939 + AluSx SINE Alu 3 304 -8 3612 133 111 32 chr6 41046615 41047115 -148232439 - Tigger2 DNA MER2_type -2145 573 3 352 276 66 44 chr6 41047115 41047451 -148232103 - L1MCc LINE L1 -4889 1534 1383 290 263 16 97 chr6 41048488 41048625 -148230929 - L1ME2 LINE L1 -381 5740 5664 1746 123 49 3 chr6 41048625 41048747 -148230807 + AluSx SINE Alu 1 116 -196 233 29 0 29 chr6 41048747 41048782 -148230772 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1746 123 49 3 chr6 41048782 41048943 -148230611 + AluSx SINE Alu 116 297 -15 290 263 16 97 chr6 41048943 41049011 -148230543 - L1ME2 LINE L1 -457 5664 5592 21 0 0 0 chr6 41049011 41049032 -148230522 + AT_rich Low_complexity Low_complexity 1 21 0 201 208 0 21 chr6 41049063 41049111 -148230443 + (TATAA)n Simple_repeat Simple_repeat 5 51 0 3423 140 11 9 chr6 41049559 41050102 -148229452 + LTR10A LTR ERV1 1 544 -65 390 269 141 39 chr6 41050113 41050269 -148229285 - L1ME3A LINE L1 -274 5896 5725 4475 116 8 0 chr6 41050620 41051250 -148228304 - MER41B LTR ERV1 0 635 1 2311 192 24 2 chr6 41051286 41051703 -148227851 + MSTB LTR MaLR 1 426 0 2011 172 9 0 chr6 41052259 41052608 -148226946 + MER47A DNA MER2_type 15 366 0 253 345 86 83 chr6 41052745 41053119 -148226435 - L2 LINE L2 0 3272 2898 185 346 103 0 chr6 41053163 41053241 -148226313 - L2 LINE L2 -1021 2293 2208 6323 62 5 0 chr6 41054244 41055020 -148224534 - LTR17 LTR ERV1 0 780 1 5229 172 20 19 chr6 41055432 41056257 -148223297 - MER49 LTR ERV1 0 923 95 1891 152 0 0 chr6 41056257 41056559 -148222995 - AluSx SINE Alu -10 302 1 5229 172 20 19 chr6 41056559 41056646 -148222908 - MER49 LTR ERV1 -828 95 10 309 220 99 11 chr6 41056656 41056747 -148222807 - MARNA DNA Mariner -334 252 154 195 114 0 0 chr6 41058366 41058401 -148221153 + (TC)n Simple_repeat Simple_repeat 1 35 0 272 402 9 0 chr6 41060182 41060294 -148219260 - L3 LINE CR1 -477 1100 988 1099 235 35 53 chr6 41060411 41060730 -148218824 + MER93a LTR ERV1 90 402 0 410 306 35 21 chr6 41060885 41061029 -148218525 + MIR3 SINE MIR 31 176 -32 187 191 0 48 chr6 41060997 41061039 -148218515 + L3 LINE CR1 1518 1557 -20 * 839 206 180 0 chr6 41061398 41061592 -148217962 + MIR SINE MIR 7 235 -27 182 211 77 39 chr6 41061568 41061620 -148217934 + L2 LINE L2 3216 3269 -3 * 212 242 153 48 chr6 41061716 41061840 -148217714 - MIR SINE MIR -55 207 71 279 279 0 0 chr6 41063126 41063194 -148216360 + MIR SINE MIR 85 152 -110 535 256 63 19 chr6 41063249 41063456 -148216098 + L2 LINE L2 528 743 -2571 4420 261 139 26 chr6 41063473 41064410 -148215144 + L2 LINE L2 971 1800 -1514 1719 176 90 9 chr6 41064410 41064756 -148214798 + MLT1A2 LTR MaLR 1 374 0 4420 261 139 26 chr6 41064756 41065441 -148214113 + L2 LINE L2 1800 2777 -537 1058 197 19 5 chr6 41065468 41065676 -148213878 - MER20 DNA MER1_type -8 211 1 2867 130 2 14 chr6 41065689 41066113 -148213441 - L1P3 LINE L1 -6042 419 1 1326 135 4 58 chr6 41066110 41066370 -148213184 - L1MA5 LINE L1 -241 6059 5814 * 3289 254 109 20 chr6 41066361 41067626 -148211928 - L1M4c LINE L1 -3940 2444 1040 2708 19 0 0 chr6 41067626 41067937 -148211617 - AluYa5 SINE Alu 0 311 1 3289 254 109 20 chr6 41067937 41068085 -148211469 - L1M4c LINE L1 -5344 1040 906 4015 241 66 12 chr6 41068099 41069446 -148210108 + L1M4 LINE L1 2220 3639 -2507 2211 103 3 0 chr6 41070047 41070347 -148209207 + AluSp SINE Alu 1 301 -12 1409 228 20 0 chr6 41071338 41071680 -148207874 + L1MB5 LINE L1 5817 6165 -9 2092 167 27 3 chr6 41072808 41073173 -148206381 - MLT1B LTR MaLR -16 374 1 501 270 0 0 chr6 41073358 41073469 -148206085 + MER81 DNA DNA 3 113 -1 186 302 222 5 chr6 41073883 41074072 -148205482 - L2 LINE L2 -239 3074 2845 2302 126 113 13 chr6 41075570 41075959 -148203595 - MSTA LTR MaLR 0 428 1 221 318 47 28 chr6 41076063 41076170 -148203384 - MIR SINE MIR -10 252 144 324 266 11 11 chr6 41076300 41076394 -148203160 - L1M4 LINE L1 -1308 4838 4745 591 264 76 44 chr6 41076425 41076739 -148202815 + L1MCa LINE L1 1474 1990 -4617 1136 230 29 71 chr6 41076739 41077121 -148202433 - L1M4 LINE L1 -1996 4150 3785 1773 254 56 13 chr6 41077176 41077782 -148201772 + L1M4 LINE L1 4650 5281 -865 1631 180 3 22 chr6 41078302 41078619 -148200935 - AluJb SINE Alu -1 311 1 180 245 0 0 chr6 41078952 41079005 -148200549 + (CA)n Simple_repeat Simple_repeat 1 53 0 260 185 0 15 chr6 41079217 41079282 -148200272 + GA-rich Low_complexity Low_complexity 4 67 0 290 261 87 65 chr6 41080481 41080711 -148198843 + SN5 Other centromeric 1 235 -220 2216 84 6 28 chr6 41085602 41085922 -148193632 + AluSp SINE Alu 1 313 0 2359 170 49 0 chr6 41086031 41086437 -148193117 - MSTB LTR MaLR 0 426 1 620 343 72 29 chr6 41086539 41087466 -148192088 + L1PBb LINE L1 273 1373 -5836 2424 68 0 10 chr6 41087491 41087800 -148191754 + AluSp SINE Alu 1 306 -7 1309 267 54 23 chr6 41087900 41088703 -148190851 + L1PBb LINE L1 1361 2036 -5173 2694 205 15 42 chr6 41088776 41089018 -148190536 + L1PBb LINE L1 2127 2374 -4834 2431 63 0 0 chr6 41089018 41089321 -148190233 + AluY SINE Alu 1 303 -8 2694 205 15 42 chr6 41089321 41089825 -148189729 + L1PBb LINE L1 2374 2853 -4355 2505 70 0 13 chr6 41089825 41090139 -148189415 + AluY SINE Alu 1 310 -1 1372 166 8 11 chr6 41090140 41090405 -148189149 + LTR2B LTR ERV1 227 490 0 465 71 0 60 chr6 41090407 41090482 -148189072 + AluSp/q SINE Alu 235 306 -7 2387 110 0 0 chr6 41090482 41090792 -148188762 + AluSg SINE Alu 1 310 0 2232 113 10 3 chr6 41090839 41091150 -148188404 + AluSq SINE Alu 1 313 0 2189 136 3 0 chr6 41091370 41091678 -148187876 + AluSx SINE Alu 1 309 -3 2157 158 14 0 chr6 41091681 41092028 -148187526 - L1PB1 LINE L1 0 6151 5800 298 315 47 51 chr6 41092084 41092338 -148187216 + L1M4 LINE L1 4579 4831 -1315 2202 86 7 17 chr6 41092422 41092713 -148186841 + AluSp SINE Alu 1 288 -25 2370 53 0 3 chr6 41092713 41092998 -148186556 + AluY SINE Alu 1 284 -27 2269 74 40 0 chr6 41093017 41093316 -148186238 + AluY SINE Alu 1 311 0 1527 91 0 5 chr6 41093486 41093684 -148185870 - AluSg/x SINE Alu -32 278 82 1862 117 4 0 chr6 41094037 41094284 -148185270 - AluSp SINE Alu -2 311 64 1223 197 32 81 chr6 41094296 41094712 -148184842 + MSTB1 LTR MaLR 51 432 0 906 187 29 85 chr6 41094729 41094835 -148184719 + L1MC3 LINE L1 7488 7598 -187 2019 161 0 0 chr6 41094835 41095127 -148184427 + AluSx SINE Alu 1 292 -20 906 187 29 85 chr6 41095127 41095225 -148184329 + L1MC3 LINE L1 7598 7670 -115 2204 106 10 0 chr6 41095225 41095518 -148184036 + AluSx SINE Alu 1 296 -16 906 187 29 85 chr6 41095518 41095628 -148183926 + L1MC3 LINE L1 7670 7785 0 1977 196 82 14 chr6 41096099 41096600 -148182954 + L1MC3 LINE L1 7227 7761 -24 225 0 0 0 chr6 41096600 41096625 -148182929 + (ATTTG)n Simple_repeat Simple_repeat 2 26 0 2278 95 3 0 chr6 41096625 41096909 -148182645 - AluSp SINE Alu -28 285 1 1048 220 116 67 chr6 41097824 41098115 -148181439 - MLT1E3 LTR MaLR -234 390 76 1907 152 42 121 chr6 41098115 41098569 -148180985 + MER47B DNA MER2_type 1 418 0 1048 220 116 67 chr6 41098569 41098649 -148180905 - MLT1E3 LTR MaLR -548 76 1 1574 266 93 78 chr6 41098703 41099501 -148180053 - HERVL40 LTR ERVL -4306 1224 415 2308 117 0 3 chr6 41099615 41099923 -148179631 + AluSx SINE Alu 1 307 -5 2534 84 3 0 chr6 41099984 41100294 -148179260 + AluSp SINE Alu 1 311 -2 1141 59 13 0 chr6 41100342 41100495 -148179059 + L1PA4 LINE L1 6001 6155 0 1899 87 111 35 chr6 41100519 41100807 -148178747 + AluSg SINE Alu 1 310 0 1738 190 0 7 chr6 41100858 41101153 -148178401 - AluJo SINE Alu -8 304 12 1300 133 6 0 chr6 41101236 41101417 -148178137 - AluSx SINE Alu -130 182 1 2501 90 0 0 chr6 41101469 41101779 -148177775 - AluSq SINE Alu -1 312 3 32 0 0 0 chr6 41102006 41102038 -148177516 + GC_rich Low_complexity Low_complexity 1 32 0 2159 75 21 0 chr6 41103265 41103575 -148175979 - AluSp SINE Alu 0 316 1 214 151 57 0 chr6 41103672 41103725 -148175829 + GA-rich Low_complexity Low_complexity 5 60 0 2315 186 43 50 chr6 41104085 41104137 -148175417 - Tigger7 DNA MER2_type 0 2587 2536 1672 130 24 4 chr6 41104137 41104383 -148175171 - AluSx SINE Alu -11 301 51 2315 186 43 50 chr6 41104383 41104970 -148174584 - Tigger7 DNA MER2_type -51 2536 1946 2139 122 0 14 chr6 41104970 41105265 -148174289 - AluSx SINE Alu -21 291 1 2315 186 43 50 chr6 41105265 41105356 -148174198 - Tigger7 DNA MER2_type -641 1946 2 189 0 0 0 chr6 41105385 41105406 -148174148 + (TG)n Simple_repeat Simple_repeat 2 22 0 257 342 120 13 chr6 41105406 41105553 -148174001 - MIR3 SINE MIR -10 198 32 185 229 229 17 chr6 41105617 41105735 -148173819 + MIR SINE MIR 86 228 -34 2557 78 0 0 chr6 41106611 41106920 -148172634 - AluSg SINE Alu -1 309 1 207 0 0 0 chr6 41107050 41107073 -148172481 + (CA)n Simple_repeat Simple_repeat 2 24 0 266 266 0 0 chr6 41107480 41107544 -148172010 - L2 LINE L2 -1 3271 3208 2392 93 0 7 chr6 41108003 41108305 -148171249 - AluSc SINE Alu -9 300 1 403 230 30 0 chr6 41108531 41108631 -148170923 - MER94 DNA DNA -19 115 13 2167 112 0 0 chr6 41108912 41109364 -148170190 - AluSq SINE Alu 0 452 1 2294 85 0 3 chr6 41110833 41111169 -148168385 - AluSg SINE Alu 0 335 1 193 314 29 14 chr6 41112055 41112125 -148167429 - L3b LINE CR1 -2 1581 1511 379 236 91 0 chr6 41112997 41113107 -148166447 + Charlie4a DNA MER1_type 17 136 -372 2109 110 0 0 chr6 41113108 41113381 -148166173 + AluSg SINE Alu 2 274 -36 1249 177 47 86 chr6 41113447 41113585 -148165969 + Charlie4a DNA MER1_type 133 275 -1686 2106 102 36 0 chr6 41113585 41113891 -148165663 + AluSq SINE Alu 1 316 0 1249 177 47 86 chr6 41113891 41113955 -148165599 + Charlie4a DNA MER1_type 275 340 -1621 2392 78 24 0 chr6 41113955 41114250 -148165304 + AluSq SINE Alu 1 302 -11 1249 177 47 86 chr6 41114250 41114429 -148165125 + Charlie4a DNA MER1_type 340 501 -7 285 297 76 17 chr6 41114663 41114781 -148164773 - L2 LINE L2 -3 3310 3186 191 270 139 29 chr6 41114951 41115088 -148164466 + MIR SINE MIR 110 261 -1 495 291 113 19 chr6 41115899 41116112 -148163442 - MIR SINE MIR -10 252 20 429 270 0 26 chr6 41116589 41116704 -148162850 + MIR SINE MIR 60 171 -91 212 270 16 32 chr6 41117029 41117092 -148162462 + L2 LINE L2 3169 3230 -42 482 207 0 9 chr6 41117320 41117436 -148162118 - Charlie4a DNA MER1_type -324 184 70 985 196 63 58 chr6 41117606 41117781 -148161773 + Charlie4a DNA MER1_type 24 197 -1764 2545 75 3 0 chr6 41117781 41118087 -148161467 + AluSp SINE Alu 1 307 -6 985 196 63 58 chr6 41118087 41118266 -148161288 + Charlie4a DNA MER1_type 197 436 -1525 1866 155 0 20 chr6 41118266 41118569 -148160985 + AluJb SINE Alu 1 297 -15 985 196 63 58 chr6 41118569 41118640 -148160914 + Charlie4a DNA MER1_type 436 505 -3 2226 129 3 0 chr6 41118672 41118981 -148160573 + AluSq SINE Alu 4 313 0 206 281 0 16 chr6 41119142 41119206 -148160348 - L3b LINE CR1 -217 1366 1304 495 275 55 11 chr6 41119521 41119703 -148159851 + L1MC5 LINE L1 7261 7450 -511 458 233 62 98 chr6 41119706 41119891 -148159663 + L1MC5 LINE L1 7546 7736 -225 2243 77 24 17 chr6 41119891 41120188 -148159366 - AluY SINE Alu -12 299 1 458 233 62 98 chr6 41120188 41120214 -148159340 + L1MC5 LINE L1 7736 7761 -200 1998 146 3 3 chr6 41120214 41120522 -148159032 + AluJb SINE Alu 2 309 -3 458 233 62 98 chr6 41120522 41120678 -148158876 + L1MC5 LINE L1 7761 7901 -60 2388 71 7 3 chr6 41120680 41120974 -148158580 - AluSp SINE Alu -17 296 2 2361 86 17 0 chr6 41121335 41121637 -148157917 - AluSp SINE Alu -6 307 1 2200 99 61 0 chr6 41122167 41122461 -148157093 + AluSx SINE Alu 1 312 0 225 0 0 0 chr6 41122585 41122610 -148156944 + (TG)n Simple_repeat Simple_repeat 1 25 0 2253 75 3 33 chr6 41122627 41122933 -148156621 - AluY SINE Alu -14 297 1 779 143 40 109 chr6 41122948 41123123 -148156431 - FRAM SINE Alu 0 166 4 337 335 36 22 chr6 41123154 41123432 -148156122 - L1MC4a LINE L1 -1917 5891 5610 2015 118 12 56 chr6 41124020 41124341 -148155213 - AluSq SINE Alu -6 307 1 491 253 43 12 chr6 41125034 41125196 -148154358 - MIR SINE MIR -7 255 89 1046 118 0 0 chr6 41125228 41125364 -148154190 + AluSq/x SINE Alu 1 136 -176 1959 88 6 91 chr6 41125364 41125682 -148153872 + AluSc SINE Alu 1 291 -18 189 0 0 0 chr6 41125895 41125916 -148153638 + (GGA)n Simple_repeat Simple_repeat 1 21 0 936 235 35 0 chr6 41126954 41127154 -148152400 - MER3 DNA MER1_type 0 209 3 216 0 0 0 chr6 41127892 41127916 -148151638 + (CCCCCT)n Simple_repeat Simple_repeat 5 28 0 1257 77 0 0 chr6 41128162 41128332 -148151222 + (TTC)n Simple_repeat Simple_repeat 2 171 0 198 171 0 0 chr6 41128332 41128373 -148151181 + CT-rich Low_complexity Low_complexity 2 42 0 2512 46 30 0 chr6 41128505 41128807 -148150747 - AluY SINE Alu 0 311 1 231 319 56 0 chr6 41129511 41129583 -148149971 + L2 LINE L2 2686 2761 -553 1968 205 80 50 chr6 41129818 41129889 -148149665 - MLT1E3 LTR MaLR 0 624 557 1192 229 19 52 chr6 41129889 41130199 -148149355 - AluJo SINE Alu -2 300 1 1968 205 80 50 chr6 41130199 41130692 -148148862 - MLT1E3 LTR MaLR -67 557 43 198 71 0 0 chr6 41130745 41130773 -148148781 + (T)n Simple_repeat Simple_repeat 1 28 0 6529 74 26 57 chr6 41130774 41133115 -148146439 - SVA Other Other -520 1385 58 1220 0 0 53 chr6 41133115 41133305 -148146249 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 6529 74 26 57 chr6 41133305 41133342 -148146212 - SVA Other Other -1847 58 21 23 0 0 0 chr6 41133480 41133503 -148146051 + AT_rich Low_complexity Low_complexity 1 23 0 1620 189 0 11 chr6 41133514 41133799 -148145755 + AluJb SINE Alu 9 290 -22 2034 208 80 15 chr6 41133875 41134403 -148145151 - MLT1F1 LTR MaLR 0 567 6 252 116 23 0 chr6 41135440 41135483 -148144071 + MADE1 DNA Mariner 35 78 -2 441 167 0 0 chr6 41135833 41135911 -148143643 - MLT1F LTR MaLR -2 540 463 545 332 80 8 chr6 41136023 41136397 -148143157 - LTR16B LTR ERVL -2 462 62 1406 331 42 49 chr6 41136405 41137624 -148141930 - ERVL LTR ERVL -504 5260 3688 687 296 42 0 chr6 41137622 41137929 -148141625 - ERVL LTR ERVL -2173 3481 3162 * 2884 318 59 23 chr6 41138018 41140049 -148139505 - ERVL LTR ERVL -1953 3043 873 26 30 0 0 chr6 41140924 41140957 -148138597 + AT_rich Low_complexity Low_complexity 1 33 0 916 234 109 13 chr6 41141770 41142112 -148137442 - LTR43 LTR ERV1 -53 470 177 1940 165 41 11 chr6 41143583 41143625 -148135929 - MLT2C1 LTR ERVL 0 397 358 393 22 0 0 chr6 41143625 41143671 -148135883 + (TG)n Simple_repeat Simple_repeat 2 47 0 1940 165 41 11 chr6 41143671 41143991 -148135563 - MLT2C1 LTR ERVL -39 358 24 234 212 106 59 chr6 41146964 41147049 -148132505 + L2 LINE L2 3183 3271 -1 552 68 0 0 chr6 41147137 41147210 -148132344 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 2024 90 0 50 chr6 41147316 41147594 -148131960 - AluSg SINE Alu -13 297 34 201 74 0 0 chr6 41148886 41148913 -148130641 + (TG)n Simple_repeat Simple_repeat 2 28 0 693 309 22 53 chr6 41149082 41149474 -148130080 + L1MC3 LINE L1 1445 1825 -4571 2464 76 3 13 chr6 41149474 41149790 -148129764 - AluSp SINE Alu 0 313 1 693 309 22 53 chr6 41149790 41149808 -148129746 + L1MC3 LINE L1 1825 1842 -4554 * 1037 220 63 16 chr6 41149805 41150169 -148129385 + L1MC3 LINE L1 2667 3047 -3168 1761 229 69 21 chr6 41150170 41150377 -148129177 + L1MC3 LINE L1 4799 4995 -1220 2038 120 4 0 chr6 41150377 41150652 -148128902 + AluSx SINE Alu 36 311 -1 1761 229 69 21 chr6 41150652 41151123 -148128431 + L1MC3 LINE L1 4995 5121 -1094 1634 184 57 0 chr6 41151123 41151235 -148128319 + AluJb SINE Alu 5 109 -203 252 0 0 0 chr6 41151235 41151263 -148128291 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1634 184 57 0 chr6 41151263 41151433 -148128121 + AluJb SINE Alu 109 303 -9 1761 229 69 21 chr6 41151433 41151803 -148127751 + L1MC3 LINE L1 5121 5472 -743 2070 132 0 23 chr6 41151808 41152111 -148127443 + AluSx SINE Alu 1 296 -16 522 143 9 76 chr6 41152134 41152239 -148127315 + AluJo/FLAM SINE Alu 35 132 -180 2351 100 3 0 chr6 41152241 41152541 -148127013 + AluSp SINE Alu 1 301 -12 813 265 70 18 chr6 41152561 41152833 -148126721 + L1ME1 LINE L1 5818 6103 -63 2136 95 67 0 chr6 41152833 41153117 -148126437 + AluSq SINE Alu 1 303 -10 2338 88 6 28 chr6 41153451 41153771 -148125783 + AluSp SINE Alu 1 313 0 2397 170 49 0 chr6 41153880 41154286 -148125268 - MSTB LTR MaLR 0 426 1 571 351 70 25 chr6 41154388 41155315 -148124239 + L1PBb LINE L1 273 1373 -5836 2582 65 0 10 chr6 41155340 41155648 -148123906 + AluSp SINE Alu 1 305 -8 1194 274 51 21 chr6 41155748 41156552 -148123002 + L1PBb LINE L1 1361 2036 -5173 2474 209 15 39 chr6 41156629 41156865 -148122689 + L1PBb LINE L1 2131 2371 -4837 2575 63 0 0 chr6 41156865 41157167 -148122387 + AluY SINE Alu 1 302 -9 2474 209 15 39 chr6 41157167 41157671 -148121883 + L1PBb LINE L1 2371 2853 -4355 2434 74 0 13 chr6 41157671 41157980 -148121574 + AluY SINE Alu 1 305 -6 1346 170 8 11 chr6 41157981 41158246 -148121308 + LTR2B LTR ERV1 227 490 0 528 63 0 0 chr6 41158248 41158347 -148121207 + AluSp/q SINE Alu 235 333 0 2402 107 0 0 chr6 41158351 41158661 -148120893 + AluSg SINE Alu 1 310 0 2217 116 10 3 chr6 41158707 41159018 -148120536 + AluSq SINE Alu 1 313 0 2248 129 3 0 chr6 41159237 41159547 -148120007 + AluSx SINE Alu 1 311 -1 2124 164 14 0 chr6 41159552 41159899 -148119655 - L1PB1 LINE L1 0 6151 5800 298 315 47 51 chr6 41159955 41160209 -148119345 + L1M4 LINE L1 4579 4831 -1315 820 85 0 0 chr6 41160293 41160399 -148119155 + AluSp SINE Alu 1 106 -207 718 228 13 20 chr6 41161496 41161666 -148117888 + FRAM SINE Alu 1 169 0 720 206 34 17 chr6 41161733 41161908 -148117646 - MER5B DNA MER1_type 0 178 1 248 246 0 0 chr6 41161993 41162050 -148117504 - L1MB7 LINE L1 -17 6167 6111 280 269 13 0 chr6 41162697 41162775 -148116779 - L1MB7 LINE L1 -58 6126 6048 813 59 0 0 chr6 41162782 41162883 -148116671 - HY3 scRNA scRNA 0 101 1 188 35 35 0 chr6 41164595 41164624 -148114930 + (TCTCC)n Simple_repeat Simple_repeat 2 31 0 2241 123 3 0 chr6 41165797 41166106 -148113448 - AluY SINE Alu -1 310 1 1757 200 33 14 chr6 41166106 41166235 -148113319 - L1M3 LINE L1 -568 5615 5490 297 0 0 0 chr6 41166235 41166268 -148113286 + (TG)n Simple_repeat Simple_repeat 2 34 0 1757 200 33 14 chr6 41166268 41166845 -148112709 - L1M3 LINE L1 -693 5490 4899 514 282 141 0 chr6 41171527 41171697 -148107857 + MIR SINE MIR 30 223 -39 795 296 132 20 chr6 41172911 41173550 -148106004 - HAL1 LINE L1 0 2507 1798 215 280 80 30 chr6 41173575 41173675 -148105879 - MER5A DNA MER1_type -63 126 22 1757 188 111 11 chr6 41173803 41174245 -148105309 - L1MB2 LINE L1 -1 6170 5685 613 231 57 73 chr6 41175878 41176246 -148103308 - L1MC5 LINE L1 -509 7452 7091 508 243 77 12 chr6 41176265 41176463 -148103091 + L1ME3A LINE L1 5586 5791 -379 600 264 45 27 chr6 41176537 41176757 -148102797 + L1ME3A LINE L1 5932 6155 -15 2288 221 31 23 chr6 41177206 41177859 -148101695 + L1M4c LINE L1 997 1654 -4730 355 304 9 36 chr6 41177865 41177977 -148101577 - L1MC4 LINE L1 -1339 6703 6595 240 86 0 0 chr6 41178037 41178072 -148101482 + (TG)n Simple_repeat Simple_repeat 1 35 0 1827 197 23 32 chr6 41178177 41178613 -148100941 + L1MB5 LINE L1 5743 6174 0 26 50 0 0 chr6 41179354 41179394 -148100160 + AT_rich Low_complexity Low_complexity 1 40 0 995 161 0 0 chr6 41179626 41179769 -148099785 - FAM SINE Alu -29 156 14 2050 158 0 3 chr6 41180038 41180348 -148099206 - AluSx SINE Alu -3 309 1 301 308 34 26 chr6 41180363 41180480 -148099074 - L1ME4a LINE L1 -165 5956 5839 2043 114 3 10 chr6 41180507 41180797 -148098757 + AluSx SINE Alu 1 288 -24 1706 193 0 13 chr6 41180985 41181285 -148098269 + AluJb SINE Alu 1 296 -16 268 297 126 0 chr6 41181379 41181490 -148098064 - L2 LINE L2 0 3313 3189 2283 177 102 14 chr6 41181498 41181972 -148097582 + MLT2B3 LTR ERVL 1 523 -31 563 27 0 14 chr6 41181972 41182046 -148097508 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 2283 177 102 14 chr6 41182046 41182073 -148097481 + MLT2B3 LTR ERVL 523 546 -8 496 284 106 41 chr6 41182073 41182650 -148096904 - L2 LINE L2 -135 3178 2564 1610 212 27 34 chr6 41182650 41182692 -148096862 - L1M4 LINE L1 -721 5457 5416 3323 181 41 1 chr6 41182692 41183349 -148096205 - L1MB3 LINE L1 -8 6175 5493 1610 212 27 34 chr6 41183349 41183872 -148095682 - L1M4 LINE L1 -762 5416 4903 26 50 0 0 chr6 41184011 41184051 -148095503 + AT_rich Low_complexity Low_complexity 1 40 0 814 203 28 46 chr6 41185051 41185268 -148094286 - MER20 DNA MER1_type 0 219 7 595 318 99 32 chr6 41185687 41186090 -148093464 + L1MC5 LINE L1 7354 7783 -178 216 0 0 0 chr6 41186678 41186702 -148092852 + (CA)n Simple_repeat Simple_repeat 1 24 0 27 49 0 0 chr6 41186739 41186780 -148092774 + AT_rich Low_complexity Low_complexity 1 41 0 216 0 0 0 chr6 41190085 41190109 -148089445 + (CCCCCT)n Simple_repeat Simple_repeat 5 28 0 1284 75 0 0 chr6 41190355 41190528 -148089026 + (TTC)n Simple_repeat Simple_repeat 2 174 0 198 171 0 0 chr6 41190528 41190569 -148088985 + CT-rich Low_complexity Low_complexity 2 42 0 598 25 0 0 chr6 41190701 41190780 -148088774 - AluY SINE Alu 0 309 231 1445 263 8 48 chr6 41290800 41291336 -147988218 + L1M4 LINE L1 2613 3126 -3020 3173 65 2 62 chr6 41291349 41291829 -147987725 + L1PA8 LINE L1 5721 6171 -1 336 193 60 0 chr6 41291853 41291936 -147987618 + L1M4 LINE L1 3107 3194 -2952 1152 281 18 0 chr6 41291953 41292227 -147987327 - Zaphod DNA AcHobo -3670 361 83 600 236 25 127 chr6 41292392 41292706 -147986848 - LTR41 LTR ERVL -211 562 281 364 233 83 0 chr6 41292714 41292834 -147986720 + L1MCa LINE L1 1331 1460 -4966 290 193 145 14 chr6 41292995 41293140 -147986414 + L1M4 LINE L1 5236 5399 -747 522 245 78 44 chr6 41293510 41293714 -147985840 - L2 LINE L2 0 3313 3103 3323 106 43 9 chr6 41294729 41295268 -147984286 - L1MA1 LINE L1 -3 6299 5743 3584 138 7 3 chr6 41295269 41296268 -147983286 - L1MA1 LINE L1 -628 5674 4673 303 286 31 0 chr6 41296563 41296661 -147982893 - L1MC3 LINE L1 0 7785 7685 6066 61 26 79 chr6 41296681 41298865 -147980689 - SVA Other Other -518 1386 1 2435 106 20 57 chr6 41299030 41299484 -147980070 + MLT2A2 LTR ERVL 17 453 0 384 177 0 140 chr6 41299526 41299690 -147979864 + LTR41 LTR ERVL 632 772 -1 468 324 100 7 chr6 41299691 41299972 -147979582 + HAL1 LINE L1 1593 1899 -608 2385 25 7 14 chr6 41300378 41300693 -147978861 + AluY SINE Alu 1 313 0 207 321 0 0 chr6 41301058 41301111 -147978443 - L2 LINE L2 -703 2611 2559 279 278 0 21 chr6 41301812 41301909 -147977645 - HAL1 LINE L1 -968 1539 1445 505 225 107 45 chr6 41302391 41302635 -147976919 - L1M4b LINE L1 -5395 1464 1206 254 326 51 11 chr6 41302698 41302876 -147976678 - L1M4b LINE L1 -5667 1188 1004 231 218 26 122 chr6 41302930 41303086 -147976468 - L1M4b LINE L1 -5688 1171 1031 210 143 0 0 chr6 41303109 41303144 -147976410 + (TG)n Simple_repeat Simple_repeat 1 35 0 483 272 24 21 chr6 41303219 41303433 -147976121 - L1M4b LINE L1 -6341 514 91 904 197 168 17 chr6 41303520 41303885 -147975669 - L1MEc LINE L1 -3683 2532 2154 284 139 0 0 chr6 41303970 41304033 -147975521 - Alu SINE Alu 0 300 238 343 363 57 37 chr6 41304100 41304450 -147975104 - L1MEc LINE L1 -5670 535 179 383 265 138 33 chr6 41304495 41304676 -147974878 + L1MC4a LINE L1 6596 6795 -1013 2381 42 3 23 chr6 41304704 41305012 -147974542 + AluY SINE Alu 1 302 -9 396 322 45 20 chr6 41305077 41305279 -147974275 + L1M4 LINE L1 2258 2464 -3682 183 295 221 25 chr6 41305380 41305502 -147974052 + MIR3 SINE MIR 59 204 -4 7037 92 5 25 chr6 41305891 41306970 -147972584 + MER11C LTR ERVK 1 1057 -14 23 0 0 0 chr6 41307010 41307033 -147972521 + AT_rich Low_complexity Low_complexity 1 23 0 2050 140 0 19 chr6 41307158 41307465 -147972089 + AluSx SINE Alu 1 301 -11 341 151 0 24 chr6 41307816 41307887 -147971667 - Alu SINE Alu -250 51 1 192 289 0 0 chr6 41308288 41308333 -147971221 - L3 LINE CR1 -418 1159 1115 21 57 0 0 chr6 41308875 41308910 -147970644 + AT_rich Low_complexity Low_complexity 1 35 0 636 202 85 124 chr6 41308969 41309227 -147970327 - MLT1A1 LTR MaLR 0 365 118 28 0 0 0 chr6 41310490 41310518 -147969036 + AT_rich Low_complexity Low_complexity 1 28 0 2172 96 55 0 chr6 41311253 41311546 -147968008 - AluSc SINE Alu 0 309 1 493 188 20 0 chr6 41311940 41312041 -147967513 - MLT1A1 LTR MaLR -262 103 1 1079 142 0 41 chr6 41312041 41312259 -147967295 - L1 LINE L1 -786 5360 5152 1437 174 0 0 chr6 41312262 41312526 -147967028 + L1MB1 LINE L1 5867 6130 -59 353 205 0 0 chr6 41312512 41312595 -147966959 - L1 LINE L1 -3386 2760 2678 * 855 167 0 10 chr6 41312593 41312791 -147966763 + L1 LINE L1 4225 4420 -1726 * 3639 159 14 25 chr6 41312775 41312905 -147966649 + L1 LINE L1 4643 4773 -1373 2083 121 0 0 chr6 41312905 41313209 -147966345 + AluSg1 SINE Alu 1 304 0 3639 159 14 25 chr6 41313209 41313843 -147965711 + L1 LINE L1 4773 5400 -746 1615 128 0 0 chr6 41313848 41314067 -147965487 + AluSc SINE Alu 5 223 -86 393 329 62 36 chr6 41314439 41314746 -147964808 - L1M4 LINE L1 -1760 4386 4072 422 358 73 22 chr6 41316302 41316615 -147962939 + L2 LINE L2 2846 3174 -139 345 47 0 0 chr6 41317055 41317098 -147962456 + (CA)n Simple_repeat Simple_repeat 2 44 0 2446 115 22 6 chr6 41317568 41317924 -147961630 + THE1B LTR MaLR 3 364 0 1343 127 32 0 chr6 41317979 41318200 -147961354 + MSTB1 LTR MaLR 152 379 -53 1202 139 87 16 chr6 41319012 41319264 -147960290 + LTR1 LTR ERV1 1 270 -515 1097 125 40 0 chr6 41319240 41319416 -147960138 + LTR1 LTR ERV1 603 785 0 * 27 49 0 0 chr6 41319548 41319589 -147959965 + AT_rich Low_complexity Low_complexity 1 41 0 2216 113 0 0 chr6 41319589 41319873 -147959681 + AluSx SINE Alu 1 284 -28 243 146 0 0 chr6 41319873 41319914 -147959640 + (TA)n Simple_repeat Simple_repeat 2 42 0 375 260 13 87 chr6 41319923 41320073 -147959481 - L2 LINE L2 -32 3281 3143 9946 84 9 0 chr6 41320906 41322270 -147957284 + HERVFH19I LTR ERV1 6344 7719 0 3418 75 34 0 chr6 41322270 41322740 -147956814 + LTR19A LTR ERV1 1 486 0 241 237 62 31 chr6 41322991 41323088 -147956466 + MIR SINE MIR 153 252 -10 342 97 56 14 chr6 41323238 41323310 -147956244 + CT-rich Low_complexity Low_complexity 3 77 0 3420 167 41 11 chr6 41323311 41323736 -147955818 - L1MB3 LINE L1 0 6183 5727 243 0 0 0 chr6 41323736 41323763 -147955791 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3420 167 41 11 chr6 41323763 41324048 -147955506 - L1MB3 LINE L1 -456 5727 5452 407 294 78 52 chr6 41324052 41324283 -147955271 + L1ME3A LINE L1 5829 6065 -105 4280 131 39 93 chr6 41325230 41326240 -147953314 - Tigger3b DNA MER2_type -276 955 1 234 310 76 32 chr6 41326285 41326443 -147953111 - L1ME LINE L1 -5507 1036 872 281 298 44 32 chr6 41326467 41326729 -147952825 - L1ME LINE L1 -5590 940 665 441 360 44 44 chr6 41326982 41327257 -147952297 - L1ME LINE L1 -6232 308 34 402 303 45 31 chr6 41327283 41327860 -147951694 - L1MEc LINE L1 -4760 1636 1052 2059 118 16 10 chr6 41328618 41328923 -147950631 + AluSc SINE Alu 1 307 -2 260 0 57 0 chr6 41328926 41328961 -147950593 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 3614 86 34 11 chr6 41328962 41329519 -147950035 - LTR19B LTR ERV1 -10 570 1 186 43 0 0 chr6 41329820 41329843 -147949711 + (GGGAGA)n Simple_repeat Simple_repeat 4 26 0 252 77 0 0 chr6 41329942 41329981 -147949573 + (TG)n Simple_repeat Simple_repeat 2 40 0 234 139 0 0 chr6 41330039 41330075 -147949479 - MLT1K LTR MaLR -411 177 142 3277 141 64 31 chr6 41331896 41332051 -147947503 - L1MA7 LINE L1 -2 6289 6141 1314 210 52 6 chr6 41332051 41332380 -147947174 - MER2 DNA MER2_type 0 344 1 3277 141 64 31 chr6 41332380 41332461 -147947093 - L1MA7 LINE L1 -150 6141 6064 1699 167 32 0 chr6 41332461 41332743 -147946811 - AluJb SINE Alu -21 291 1 3277 141 64 31 chr6 41332743 41333179 -147946375 - L1MA7 LINE L1 -227 6064 5594 2039 115 0 0 chr6 41333219 41333488 -147946066 + AluSg SINE Alu 5 273 -37 838 271 30 27 chr6 41333599 41333898 -147945656 + LTR16A LTR ERVL 22 321 -129 307 259 41 95 chr6 41334007 41334154 -147945400 - HAL1b LINE L1 -462 886 748 214 290 48 16 chr6 41334830 41334892 -147944662 + L2 LINE L2 3134 3197 -75 417 226 78 39 chr6 41335301 41335505 -147944049 - L1MC5 LINE L1 -109 7852 7641 337 39 19 19 chr6 41335581 41335633 -147943921 + (TTCTC)n Simple_repeat Simple_repeat 5 56 0 271 224 53 0 chr6 41335649 41335725 -147943829 - L1MC5 LINE L1 -498 7463 7384 216 0 0 0 chr6 41335912 41335936 -147943618 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1240 176 52 29 chr6 41335939 41336211 -147943343 - AluJo SINE Alu -30 282 5 219 146 0 0 chr6 41336606 41336647 -147942907 + (CA)n Simple_repeat Simple_repeat 2 42 0 2572 13 0 0 chr6 41336837 41337152 -147942402 - L1PA4 LINE L1 -1559 4587 4273 7511 30 1 0 chr6 41337152 41338706 -147940848 + L1PA4 LINE L1 4596 6150 -5 1886 137 16 6 chr6 41338706 41338770 -147940784 - L1MC1 LINE L1 -5 6328 6266 1808 149 41 56 chr6 41338770 41339112 -147940442 + MER1B DNA MER1_type 1 337 0 1886 137 16 6 chr6 41339112 41339357 -147940197 - L1MC1 LINE L1 -67 6266 6013 27 0 0 0 chr6 41339762 41339789 -147939765 + AT_rich Low_complexity Low_complexity 1 27 0 290 300 123 15 chr6 41339815 41339945 -147939609 - MIR SINE MIR -27 235 92 487 83 0 0 chr6 41341926 41341998 -147937556 + MER51A LTR ERV1 489 560 -74 248 316 53 45 chr6 41343230 41343363 -147936191 + L2 LINE L2 3089 3222 -50 185 309 182 9 chr6 41344731 41344841 -147934713 + L2 LINE L2 3138 3266 -6 416 189 67 0 chr6 41344933 41345023 -147934531 + ORSL DNA AcHobo 1 96 -179 25148 164 13 27 chr6 41345126 41349341 -147930213 + L1PA10 LINE L1 315 4589 -1894 8148 61 7 0 chr6 41349341 41350303 -147929251 - LTR5 LTR ERVK 0 969 1 25148 164 13 27 chr6 41350303 41351633 -147927921 + L1PA10 LINE L1 4589 5937 -546 2935 82 3 0 chr6 41351633 41351987 -147927567 - THE1A LTR MaLR 0 355 1 12362 93 4 22 chr6 41351987 41352319 -147927235 - THE1A-int LTR MaLR 0 1580 1244 2290 110 0 3 chr6 41352319 41352628 -147926926 - AluY SINE Alu -3 308 1 12362 93 4 22 chr6 41352628 41353904 -147925650 - THE1A-int LTR MaLR -336 1244 1 2826 93 6 0 chr6 41353904 41354257 -147925297 - THE1A LTR MaLR 0 355 1 25148 164 13 27 chr6 41354257 41354759 -147924795 + L1PA10 LINE L1 5935 6461 -22 204 40 0 0 chr6 41354759 41354784 -147924770 + (TAAAA)n Simple_repeat Simple_repeat 5 29 0 25148 164 13 27 chr6 41354784 41354798 -147924756 + L1PA10 LINE L1 6461 6474 -9 3135 147 12 10 chr6 41354802 41354914 -147924640 - L1MA7 LINE L1 -350 5941 5831 1299 174 43 135 chr6 41354914 41355426 -147924128 + MER4C LTR ERV1 1 465 0 3135 147 12 10 chr6 41355426 41355824 -147923730 - L1MA7 LINE L1 -460 5831 5430 184 143 0 0 chr6 41358093 41358121 -147921433 - MIR SINE MIR -34 228 201 2166 246 76 4 chr6 41358228 41358768 -147920786 + Zaphod DNA AcHobo 83 661 -3370 308 209 137 71 chr6 41360730 41360912 -147918642 - L1M2 LINE L1 -5889 960 767 266 304 108 0 chr6 41361770 41361872 -147917682 + L2 LINE L2 3201 3313 0 2566 55 0 3 chr6 41362096 41362408 -147917146 - AluY SINE Alu 0 311 1 304 208 13 0 chr6 41366554 41366631 -147912923 - MER116 DNA Mariner -1 79 2 1615 192 10 3 chr6 41366911 41367202 -147912352 - AluJb SINE Alu -17 295 3 622 332 70 47 chr6 41367427 41367962 -147911592 - L2 LINE L2 -1 3312 2768 243 0 0 0 chr6 41367962 41367989 -147911565 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 8172 21 0 2 chr6 41368009 41369267 -147910287 - L1PA3 LINE L1 0 6155 4910 9000 27 1 0 chr6 41369267 41370314 -147909240 + L1PA3 LINE L1 3855 4902 -1244 2147 126 0 10 chr6 41370314 41370616 -147908938 - AluSq SINE Alu -14 299 1 699 307 161 41 chr6 41370616 41370682 -147908872 - L2 LINE L2 -536 2778 2721 2223 110 0 0 chr6 41370682 41370973 -147908581 - AluY SINE Alu -20 291 1 699 307 161 41 chr6 41370973 41371802 -147907752 - L2 LINE L2 -593 2721 1776 363 183 15 5 chr6 41372963 41373085 -147906469 - MER53 DNA DNA 0 189 1 871 174 56 28 chr6 41373859 41374037 -147905517 + MER20 DNA MER1_type 30 212 -7 2012 117 24 3 chr6 41374080 41374378 -147905176 - AluSx SINE Alu -8 304 1 342 298 102 39 chr6 41374411 41374773 -147904781 - Tigger4(Zombi) DNA MER2_type -1943 788 404 235 245 0 0 chr6 41374825 41374874 -147904680 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 287 341 55 76 chr6 41375043 41375398 -147904156 + L2 LINE L2 2715 3062 -251 351 0 0 0 chr6 41376354 41376393 -147903161 + (TG)n Simple_repeat Simple_repeat 1 39 0 333 100 0 0 chr6 41376393 41376443 -147903111 + (GA)n Simple_repeat Simple_repeat 2 51 0 550 278 63 21 chr6 41378100 41378291 -147901263 - MIR SINE MIR -56 206 8 299 288 83 15 chr6 41379234 41379366 -147900188 + MIR SINE MIR 54 194 -68 2465 70 3 0 chr6 41380193 41380491 -147899063 + AluSg SINE Alu 1 299 -11 360 133 0 0 chr6 41380492 41380552 -147899002 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 637 158 17 0 chr6 41381277 41381397 -147898157 + L1MA8 LINE L1 6166 6287 -4 482 308 93 24 chr6 41382124 41382413 -147897141 - MLT1L LTR MaLR -76 539 231 248 221 26 0 chr6 41382422 41382499 -147897055 - L1MC4 LINE L1 -1354 6688 6610 1828 166 3 0 chr6 41382909 41383204 -147896350 - AluSg SINE Alu -14 296 1 1238 245 24 3 chr6 41383264 41383562 -147895992 + L1MB8 LINE L1 5520 5823 -343 412 224 0 0 chr6 41383567 41383643 -147895911 + U1 snRNA snRNA 3 78 -87 630 248 0 0 chr6 41383643 41383780 -147895774 + L1PB4 LINE L1 6020 6156 0 1106 275 42 6 chr6 41383792 41384148 -147895406 + L1MB8 LINE L1 5808 6176 -2 378 339 104 43 chr6 41384339 41384698 -147894856 + L1MC/D LINE L1 5285 5666 -516 2327 96 0 16 chr6 41384698 41385010 -147894544 + AluSg SINE Alu 1 307 -3 378 339 104 43 chr6 41385010 41385074 -147894480 + L1MC/D LINE L1 5666 5725 -457 8971 87 10 23 chr6 41385179 41385514 -147894040 - HERV9 LTR ERV1 -1602 6797 6459 11286 46 13 9 chr6 41385514 41386892 -147892662 + SVA Other Other 2 1385 -1 8971 87 10 23 chr6 41386892 41387811 -147891743 - HERV9 LTR ERV1 -1940 6459 5560 1734 95 13 0 chr6 41387811 41388043 -147891511 + AluSp SINE Alu 74 308 -5 317 257 83 7 chr6 41388054 41388198 -147891356 + L1M4 LINE L1 3196 3350 -2796 3699 243 137 37 chr6 41388262 41388982 -147890572 + L1MD2 LINE L1 3196 3843 -2516 216 0 0 0 chr6 41388982 41389006 -147890548 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3699 243 137 37 chr6 41389006 41389763 -147889791 + L1MD2 LINE L1 3843 4523 -1836 200 57 0 29 chr6 41389763 41389798 -147889756 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3699 243 137 37 chr6 41389798 41389989 -147889565 + L1MD2 LINE L1 4523 4694 -1665 209 33 33 0 chr6 41389989 41390019 -147889535 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3699 243 137 37 chr6 41390019 41391189 -147888365 + L1MD2 LINE L1 4694 6357 -2 4466 173 33 14 chr6 41391202 41391783 -147887771 + L1MC2 LINE L1 5465 6068 -276 2032 202 61 25 chr6 41391783 41392228 -147887326 - LOR1b LTR ERV1 0 461 1 4466 173 33 14 chr6 41392228 41392485 -147887069 + L1MC2 LINE L1 6068 6319 -25 21 0 0 0 chr6 41392572 41392593 -147886961 + AT_rich Low_complexity Low_complexity 1 21 0 1749 109 79 19 chr6 41392781 41393046 -147886508 - MER51A LTR ERV1 -353 281 1 2826 170 19 0 chr6 41393046 41393533 -147886021 + L1MC2 LINE L1 5567 6062 -282 265 143 0 0 chr6 41393537 41393572 -147885982 - LOR1a LTR ERV1 -2 495 461 2119 193 33 38 chr6 41393572 41393959 -147885595 - LOR1b LTR ERV1 -10 451 65 2198 87 0 7 chr6 41393959 41394240 -147885314 + AluY SINE Alu 1 305 -6 217 0 0 0 chr6 41394240 41394264 -147885290 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2119 193 33 38 chr6 41394271 41394335 -147885219 - LOR1b LTR ERV1 -396 65 2 1260 178 34 34 chr6 41394335 41394604 -147884950 + L1MC2 LINE L1 6060 6328 -16 8842 158 18 62 chr6 41395105 41397046 -147882508 - L1MEc LINE L1 -1512 4703 2849 551 141 0 0 chr6 41397046 41397124 -147882430 + FLAM_C SINE Alu 33 110 -33 318 270 68 27 chr6 41397476 41397624 -147881930 - L1ME4a LINE L1 -201 5920 5767 2238 92 10 0 chr6 41397631 41397923 -147881631 + AluSq SINE Alu 1 295 -18 1853 28 0 9 chr6 41398192 41398404 -147881150 + L1PA5 LINE L1 5936 6145 -9 25 31 0 0 chr6 41398404 41398436 -147881118 + AT_rich Low_complexity Low_complexity 1 32 0 325 239 141 21 chr6 41398517 41398659 -147880895 - L1MC4 LINE L1 -126 7916 7758 2825 10 0 0 chr6 41399219 41399523 -147880031 + AluYa5 SINE Alu 2 305 -6 670 299 53 28 chr6 41400158 41400498 -147879056 + L1MEc LINE L1 2191 2514 -3701 1842 176 7 0 chr6 41400498 41400804 -147878750 + AluJb SINE Alu 1 308 -4 670 299 53 28 chr6 41400804 41401012 -147878542 + L1MEc LINE L1 2514 2715 -3500 31 20 0 20 chr6 41401085 41401114 -147878440 + AT_rich Low_complexity Low_complexity 1 30 -18 2074 121 7 7 chr6 41401114 41401404 -147878150 - AluSx SINE Alu -22 290 1 31 20 0 20 chr6 41401404 41401423 -147878131 + AT_rich Low_complexity Low_complexity 30 48 0 212 0 36 0 chr6 41401429 41401457 -147878097 + (TAATG)n Simple_repeat Simple_repeat 2 30 0 262 324 39 10 chr6 41401539 41401746 -147877808 - L1MEc LINE L1 -3500 2715 2503 913 204 88 25 chr6 41401746 41401986 -147877568 + MLT1E3 LTR MaLR 370 624 0 22 0 0 0 chr6 41402195 41402217 -147877337 + AT_rich Low_complexity Low_complexity 1 22 0 1961 164 18 12 chr6 41402958 41403294 -147876260 + MER44D DNA MER2_type 1 608 -1 261 0 0 0 chr6 41403849 41403878 -147875676 + (T)n Simple_repeat Simple_repeat 1 29 0 360 300 31 31 chr6 41404557 41404717 -147874837 - MLT1J2 LTR MaLR 0 450 291 374 211 13 0 chr6 41405089 41405165 -147874389 + MER54A LTR ERVL 2 78 -823 892 245 41 28 chr6 41405175 41405465 -147874089 + HERVL LTR ERVL 4149 4442 -1212 1068 179 118 94 chr6 41405611 41405941 -147873613 - MLT1A1 LTR MaLR 0 365 28 2044 189 21 8 chr6 41405950 41406313 -147873241 - MER54A LTR ERVL -539 362 4 311 336 15 7 chr6 41406409 41406546 -147873008 - HERVL LTR ERVL -2163 3491 3354 1551 210 9 59 chr6 41406723 41407047 -147872507 + MER70B LTR ERVL 271 578 0 621 259 45 26 chr6 41407049 41407332 -147872222 + L1MCa LINE L1 932 1223 -5203 1691 173 0 0 chr6 41407332 41407592 -147871962 + AluJb SINE Alu 27 286 -26 621 259 45 26 chr6 41407592 41407617 -147871937 + L1MCa LINE L1 1223 1246 -5180 266 240 42 52 chr6 41407639 41407735 -147871819 - L1MEc LINE L1 -5166 1230 1136 682 213 18 30 chr6 41407796 41407965 -147871589 - L1MD2 LINE L1 -10 6349 6183 * 1598 208 11 3 chr6 41407923 41408270 -147871284 + L1 LINE L1 4817 5166 -980 1872 136 0 4 chr6 41408270 41408542 -147871012 + L1PB3 LINE L1 5882 6152 -2 34 0 0 0 chr6 41408542 41408576 -147870978 + AT_rich Low_complexity Low_complexity 1 34 0 408 287 52 29 chr6 41408577 41408751 -147870803 - MIR SINE MIR -27 235 56 269 196 0 0 chr6 41408729 41408775 -147870779 - L2 LINE L2 -661 2653 2608 * 300 265 2 97 chr6 41408952 41409092 -147870462 + L1 LINE L1 5132 5255 -891 639 212 0 61 chr6 41409092 41409224 -147870330 + FLAM_A SINE Alu 3 126 -7 300 265 2 97 chr6 41409224 41409271 -147870283 + L1 LINE L1 5255 5305 -841 25320 173 13 37 chr6 41409271 41409464 -147870090 + L1PA10 LINE L1 4 200 -6283 8393 53 1 0 chr6 41409464 41410429 -147869125 - LTR5 LTR ERVK -3 966 1 25320 173 13 37 chr6 41410429 41414770 -147864784 + L1PA10 LINE L1 200 4643 -1840 8115 62 7 0 chr6 41414770 41415732 -147863822 - LTR5 LTR ERVK 0 969 1 25320 173 13 37 chr6 41415732 41417062 -147862492 + L1PA10 LINE L1 4643 6003 -480 2958 79 3 0 chr6 41417062 41417416 -147862138 - THE1A LTR MaLR 0 355 1 12428 91 4 22 chr6 41417416 41417748 -147861806 - THE1A-int LTR MaLR 0 1580 1244 2304 107 0 3 chr6 41417748 41418057 -147861497 - AluY SINE Alu -3 308 1 12428 91 4 22 chr6 41418057 41419333 -147860221 - THE1A-int LTR MaLR -336 1244 1 2798 99 6 0 chr6 41419333 41419686 -147859868 - THE1A LTR MaLR 0 355 1 25320 173 13 37 chr6 41419686 41420188 -147859366 + L1PA10 LINE L1 6001 6461 -22 249 33 0 0 chr6 41420188 41420218 -147859336 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 25320 173 13 37 chr6 41420218 41420232 -147859322 + L1PA10 LINE L1 6461 6474 -9 3135 147 12 10 chr6 41420236 41420348 -147859206 - L1MA7 LINE L1 -350 5941 5831 1305 175 41 134 chr6 41420348 41420861 -147858693 + MER4C LTR ERV1 1 465 0 3135 147 12 10 chr6 41420861 41421259 -147858295 - L1MA7 LINE L1 -460 5831 5430 206 231 0 0 chr6 41423453 41423492 -147856062 + GA-rich Low_complexity Low_complexity 2 40 0 8337 65 12 5 chr6 41423535 41424535 -147855019 - LTR13 LTR ERVK 0 1007 1 2056 245 82 4 chr6 41424678 41425201 -147854353 + Zaphod DNA AcHobo 98 661 -3370 310 258 147 68 chr6 41427161 41427351 -147852203 - L1M2 LINE L1 -5889 960 756 271 314 108 0 chr6 41428226 41428328 -147851226 + L2 LINE L2 3201 3313 0 186 333 48 0 chr6 41429941 41430025 -147849529 + L2 LINE L2 3167 3254 -59 473 143 0 22 chr6 41432742 41432833 -147846721 + (TTCC)n Simple_repeat Simple_repeat 1 89 0 1919 162 0 13 chr6 41432833 41433147 -147846407 - AluJo SINE Alu -2 310 1 22 0 0 0 chr6 41433665 41433687 -147845867 + AT_rich Low_complexity Low_complexity 1 22 0 2204 129 0 0 chr6 41434414 41434724 -147844830 - AluSg SINE Alu 0 310 1 2051 219 25 25 chr6 41435605 41436075 -147843479 + MER90 LTR ERV1 4 473 -141 1204 227 42 57 chr6 41436080 41436463 -147843091 + MLT2C1 LTR ERVL 3 379 -18 562 234 23 0 chr6 41436463 41436591 -147842963 + MER90 LTR ERV1 482 612 -2 346 292 10 0 chr6 41436680 41436776 -147842778 - MIR SINE MIR -108 154 58 590 65 26 0 chr6 41437290 41437367 -147842187 - AluY SINE Alu -11 298 220 1422 75 12 0 chr6 41437367 41437540 -147842014 - AluY SINE Alu -136 175 1 255 315 56 65 chr6 41438087 41438319 -147841235 + MIR SINE MIR 7 236 -26 426 253 17 112 chr6 41438520 41438698 -147840856 - MLT1H LTR MaLR 0 549 389 630 268 50 10 chr6 41438736 41438975 -147840579 - MLT1H LTR MaLR -250 299 8 2281 80 0 14 chr6 41439483 41439795 -147839759 + AluY SINE Alu 1 308 0 651 167 111 0 chr6 41440130 41440238 -147839316 - FLAM_A SINE Alu -13 120 1 6756 89 10 18 chr6 41440315 41441529 -147838025 + L1PA13 LINE L1 4561 5818 -345 2143 72 72 0 chr6 41441529 41441808 -147837746 + AluY SINE Alu 1 299 -12 6756 89 10 18 chr6 41441808 41442148 -147837406 + L1PA13 LINE L1 5818 6159 -4 1211 176 23 23 chr6 41442161 41442377 -147837177 - MER20 DNA MER1_type -3 216 1 1906 247 27 6 chr6 41442377 41443185 -147836369 + L1MEc LINE L1 1846 2754 -3461 2420 100 3 0 chr6 41443688 41443999 -147835555 + AluSq SINE Alu 1 312 -1 812 285 8 61 chr6 41444661 41444907 -147834647 - MIR SINE MIR 0 262 30 378 203 25 0 chr6 41445205 41445284 -147834270 + MER2 DNA MER2_type 10 90 -255 2523 50 0 20 chr6 41445292 41445595 -147833959 + AluY SINE Alu 1 297 -14 271 246 16 0 chr6 41445619 41445680 -147833874 + MER2 DNA MER2_type 284 345 0 302 377 55 7 chr6 41446799 41446945 -147832609 + HAL1 LINE L1 539 691 -1816 1147 112 51 10 chr6 41447507 41447704 -147831850 + L1MB5 LINE L1 5961 6165 -9 1833 161 62 118 chr6 41449422 41449907 -147829647 + MER66B LTR ERV1 29 486 0 407 346 69 27 chr6 41450173 41450557 -147828997 - L1MC/D LINE L1 -591 5579 5354 27 0 0 0 chr6 41450596 41450623 -147828931 + AT_rich Low_complexity Low_complexity 1 27 0 35 78 0 0 chr6 41450727 41450804 -147828750 + AT_rich Low_complexity Low_complexity 1 77 0 24 53 0 0 chr6 41450846 41450884 -147828670 + AT_rich Low_complexity Low_complexity 1 38 0 1332 162 27 12 chr6 41450884 41451143 -147828411 - L1M2 LINE L1 -635 5665 5403 391 328 57 16 chr6 41451148 41451395 -147828159 - L1MC/D LINE L1 -1153 4993 4737 240 252 89 49 chr6 41451558 41451681 -147827873 - L1MC/D LINE L1 -1537 4609 4482 1779 156 21 0 chr6 41451691 41451973 -147827581 - AluSx SINE Alu -24 288 1 273 373 8 25 chr6 41452191 41452329 -147827225 - MIR SINE MIR -66 142 8 2323 84 0 0 chr6 41452584 41452891 -147826663 - AluY SINE Alu 0 307 1 514 155 10 0 chr6 41453396 41453499 -147826055 - L1M4 LINE L1 -5141 1714 1611 1666 186 8 62 chr6 41453503 41453704 -147825850 + MLT1A1 LTR MaLR 1 173 -192 2808 38 0 0 chr6 41453704 41454045 -147825509 + L1PA4 LINE L1 5815 6155 0 1666 186 8 62 chr6 41454045 41454229 -147825325 + MLT1A1 LTR MaLR 173 365 0 5178 77 15 6 chr6 41454250 41454965 -147824589 - LTR30 LTR ERV1 0 722 1 2307 275 68 73 chr6 41454965 41455045 -147824509 - L1M4 LINE L1 -5263 1596 1517 2474 159 57 74 chr6 41455045 41455574 -147823980 + MLT2B1 LTR ERVL 1 520 0 2307 275 68 73 chr6 41455574 41457014 -147822540 - L1M4 LINE L1 -5342 1517 83 21 36 0 0 chr6 41458083 41458111 -147821443 + AT_rich Low_complexity Low_complexity 1 28 0 3552 180 52 1 chr6 41458156 41458863 -147820691 + Tigger2 DNA MER2_type 2 744 -1974 1130 162 61 0 chr6 41458930 41459158 -147820396 + Tigger2 DNA MER2_type 2461 2702 -16 4818 142 66 22 chr6 41459162 41459608 -147819946 - MER4D LTR ERV1 0 903 478 2211 86 7 13 chr6 41459608 41459909 -147819645 + AluSx SINE Alu 1 299 -13 4818 142 66 22 chr6 41459909 41460327 -147819227 - MER4D LTR ERV1 -425 478 1 372 295 161 13 chr6 41460428 41460577 -147818977 - MIR3 SINE MIR -36 172 2 2101 129 7 0 chr6 41462049 41462351 -147817203 - AluSx SINE Alu -8 304 1 204 264 110 0 chr6 41462641 41462732 -147816822 + MIR SINE MIR 129 229 -33 1987 163 0 3 chr6 41463929 41464318 -147815236 - AluSx SINE Alu 0 388 1 259 273 152 0 chr6 41464374 41464473 -147815081 - L2 LINE L2 -1 3312 3199 210 280 13 53 chr6 41464523 41464598 -147814956 + L2 LINE L2 3234 3305 -8 460 272 8 53 chr6 41465203 41465446 -147814108 - L1M4 LINE L1 -1038 5108 4877 357 238 48 62 chr6 41465581 41465791 -147813763 + L1ME3A LINE L1 5964 6170 0 2178 134 0 0 chr6 41465837 41466142 -147813412 - AluSg SINE Alu -5 305 1 180 239 56 56 chr6 41466148 41466219 -147813335 - L2 LINE L2 -16 3297 3227 204 313 15 0 chr6 41467637 41467704 -147811850 + L2 LINE L2 3242 3309 -4 204 254 30 0 chr6 41468687 41468754 -147810800 + (TATG)n Simple_repeat Simple_repeat 4 72 0 3691 161 19 42 chr6 41469045 41469413 -147810141 - L1MA7 LINE L1 -3 6288 5913 2492 71 0 0 chr6 41469413 41469721 -147809833 - AluY SINE Alu -3 308 1 3691 161 19 42 chr6 41469721 41470028 -147809526 - L1MA7 LINE L1 -378 5913 5601 1977 134 0 45 chr6 41470028 41470342 -147809212 - AluSx SINE Alu -12 300 1 3691 161 19 42 chr6 41470342 41470476 -147809078 - L1MA7 LINE L1 -690 5601 5465 2218 120 0 3 chr6 41470476 41470775 -147808779 - AluSc SINE Alu -7 302 5 3691 161 19 42 chr6 41470775 41471414 -147808140 - L1MA7 LINE L1 -826 5465 4774 2071 125 0 0 chr6 41471414 41471718 -147807836 - AluSg1 SINE Alu 0 304 1 3691 161 19 42 chr6 41471718 41471848 -147807706 - L1MA7 LINE L1 -1517 4774 4643 855 167 0 10 chr6 41471832 41472030 -147807524 - L1MA7 LINE L1 -1726 4420 4225 * 353 205 0 0 chr6 41472028 41472111 -147807443 + L1 LINE L1 2678 2760 -3386 * 1417 178 0 0 chr6 41472097 41472361 -147807193 - L1MB1 LINE L1 -59 6130 5867 1039 151 0 41 chr6 41472364 41472582 -147806972 + L1 LINE L1 5152 5360 -786 493 188 20 0 chr6 41472582 41472683 -147806871 + MLT1A1 LTR MaLR 1 103 -262 2167 96 55 0 chr6 41473081 41473374 -147806180 + AluSc SINE Alu 1 309 0 28 0 0 0 chr6 41474110 41474138 -147805416 + AT_rich Low_complexity Low_complexity 1 28 0 689 198 85 124 chr6 41475400 41475658 -147803896 + MLT1A1 LTR MaLR 118 365 0 218 244 0 0 chr6 41476283 41476328 -147803226 + L3 LINE CR1 1115 1159 -418 22 0 0 0 chr6 41476581 41476603 -147802951 + AT_rich Low_complexity Low_complexity 1 22 0 356 127 0 24 chr6 41476728 41476799 -147802755 + Alu SINE Alu 1 51 -251 2064 133 0 20 chr6 41477150 41477450 -147802104 - AluSx SINE Alu -18 294 1 23 0 0 0 chr6 41477575 41477598 -147801956 + AT_rich Low_complexity Low_complexity 1 23 0 7189 80 8 21 chr6 41477638 41478710 -147800844 - MER11C LTR ERVK -14 1057 1 329 294 175 19 chr6 41479097 41479257 -147800297 - MIR3 SINE MIR -4 204 20 276 208 13 0 chr6 41480660 41480737 -147798817 - MER116 DNA Mariner -1 79 2 1618 210 7 0 chr6 41481017 41481308 -147798246 - AluJb SINE Alu -17 295 3 886 320 117 46 chr6 41481530 41482056 -147797498 - L2 LINE L2 -1 3312 2824 2228 111 16 7 chr6 41482056 41482362 -147797192 - AluSq SINE Alu -4 309 1 886 320 117 46 chr6 41482362 41482428 -147797126 - L2 LINE L2 -489 2824 2764 2252 109 0 0 chr6 41482428 41482721 -147796833 - AluY SINE Alu -18 293 1 886 320 117 46 chr6 41482721 41483530 -147796024 - L2 LINE L2 -549 2764 1813 213 338 12 12 chr6 41483748 41483828 -147795726 - L2 LINE L2 -5 3308 3229 223 308 105 14 chr6 41484292 41484435 -147795119 - MIR SINE MIR -18 244 89 2413 70 0 20 chr6 41484657 41484958 -147794596 + AluY SINE Alu 1 295 -16 306 176 16 5 chr6 41485045 41485167 -147794387 - MER53 DNA DNA 0 189 1 677 214 48 18 chr6 41485946 41486114 -147793440 + MER20 DNA MER1_type 37 209 -10 2239 100 3 3 chr6 41486160 41486461 -147793093 - AluSx SINE Alu -11 301 1 264 298 90 38 chr6 41486494 41486860 -147792694 - Tigger4(Zombi) DNA MER2_type -1943 788 404 216 258 15 15 chr6 41486895 41486961 -147792593 + (TA)n Simple_repeat Simple_repeat 2 67 0 339 368 56 74 chr6 41487130 41487697 -147791857 + L2 LINE L2 2715 3267 -5 405 0 0 0 chr6 41488373 41488418 -147791136 + (TG)n Simple_repeat Simple_repeat 1 45 0 297 0 0 0 chr6 41488417 41488450 -147791104 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 7575 28 0 0 chr6 41489096 41490276 -147789278 - L1PA4 LINE L1 -2 6153 4973 22 80 0 0 chr6 41490349 41490399 -147789155 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr6 41490638 41490661 -147788893 + AT_rich Low_complexity Low_complexity 1 23 0 528 280 69 16 chr6 41491315 41491504 -147788050 - MIR SINE MIR -56 206 8 288 241 11 46 chr6 41492443 41492530 -147787024 + MIR SINE MIR 50 133 -129 2370 87 0 13 chr6 41493403 41493715 -147785839 + AluSg SINE Alu 1 308 -2 582 180 16 0 chr6 41494428 41494550 -147785004 + L1MA8 LINE L1 6164 6287 -4 379 318 87 17 chr6 41495282 41495571 -147783983 - MLT1L LTR MaLR -76 539 231 324 277 0 32 chr6 41495578 41495672 -147783882 + L1MC4 LINE L1 6613 6703 -1339 1867 162 3 0 chr6 41496057 41496353 -147783201 - AluSg SINE Alu -13 297 1 1238 245 24 3 chr6 41496413 41496711 -147782843 + L1MB8 LINE L1 5520 5823 -343 421 224 0 0 chr6 41496716 41496792 -147782762 + U1 snRNA snRNA 3 78 -87 630 248 0 0 chr6 41496792 41496929 -147782625 + L1PB4 LINE L1 6020 6156 0 1106 275 42 6 chr6 41496941 41497297 -147782257 + L1MB8 LINE L1 5808 6176 -2 362 320 67 17 chr6 41497488 41497666 -147781888 + L1MC2 LINE L1 5285 5471 -650 1757 97 9 0 chr6 41497847 41498075 -147781479 + AluSq SINE Alu 1 230 -83 7230 55 19 18 chr6 41498075 41499102 -147780452 + SVA Other Other 432 1384 -2 6827 84 13 12 chr6 41499102 41500021 -147779533 - HERV9 LTR ERV1 -1920 6479 5560 1742 94 13 0 chr6 41500021 41500254 -147779300 + AluSp SINE Alu 74 309 -4 305 269 159 14 chr6 41500265 41500473 -147779081 + L1M4 LINE L1 3196 3433 -2713 2146 279 55 8 chr6 41500473 41501192 -147778362 + L1MD2 LINE L1 3196 3961 -2185 216 0 0 0 chr6 41501192 41501216 -147778338 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2146 279 55 8 chr6 41501216 41501329 -147778225 + L1MD2 LINE L1 3961 4067 -2079 3663 232 83 48 chr6 41501337 41501973 -147777581 + L1MD2 LINE L1 4268 4880 -1479 200 57 0 29 chr6 41501973 41502008 -147777546 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3663 232 83 48 chr6 41502008 41502199 -147777355 + L1MD2 LINE L1 4880 5063 -1296 209 33 33 0 chr6 41502199 41502229 -147777325 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3663 232 83 48 chr6 41502229 41503398 -147776156 + L1MD2 LINE L1 5063 6357 -2 4482 172 33 14 chr6 41503411 41503992 -147775562 + L1MC2 LINE L1 5465 6068 -276 2049 200 61 25 chr6 41503992 41504437 -147775117 - LOR1b LTR ERV1 0 461 1 4482 172 33 14 chr6 41504437 41504694 -147774860 + L1MC2 LINE L1 6068 6319 -25 21 0 0 0 chr6 41504781 41504802 -147774752 + AT_rich Low_complexity Low_complexity 1 21 0 1749 109 79 19 chr6 41504990 41505255 -147774299 - MER51A LTR ERV1 -353 281 1 2803 173 19 0 chr6 41505255 41505742 -147773812 + L1MC2 LINE L1 5567 6062 -282 245 171 0 0 chr6 41505746 41505781 -147773773 - LOR1a LTR ERV1 -2 495 461 2119 193 33 38 chr6 41505781 41506168 -147773386 - LOR1b LTR ERV1 -10 451 65 2200 87 0 7 chr6 41506168 41506485 -147773069 + AluY SINE Alu 1 311 0 2119 193 33 38 chr6 41506485 41506549 -147773005 - LOR1b LTR ERV1 -396 65 2 1260 178 34 34 chr6 41506549 41506818 -147772736 + L1MC2 LINE L1 6060 6328 -16 233 335 113 27 chr6 41507130 41507315 -147772239 - MIR SINE MIR -26 236 36 1959 129 7 0 chr6 41507604 41507890 -147771664 - AluSc SINE Alu -1 308 21 510 161 0 0 chr6 41507946 41508033 -147771521 + AluSc SINE Alu 220 306 -3 961 256 46 14 chr6 41508623 41508904 -147770650 - LTR43 LTR ERV1 -140 462 173 349 138 15 0 chr6 41509083 41509148 -147770406 - LTR60 LTR ERV1 -520 66 1 2016 152 29 37 chr6 41509494 41509870 -147769684 - THE1C LTR MaLR 0 375 3 4675 184 141 62 chr6 41509877 41511157 -147768397 - MER52A LTR ERV1 -4 1751 371 814 149 57 0 chr6 41511480 41511732 -147767822 - AluJb SINE Alu 0 422 163 2143 207 65 11 chr6 41512791 41513269 -147766285 + LTR22 LTR ERVK 1 504 -5 273 381 35 17 chr6 41513303 41513476 -147766078 + MIR SINE MIR 68 243 -19 23 0 0 0 chr6 41513810 41513833 -147765721 + AT_rich Low_complexity Low_complexity 1 23 0 2064 134 0 0 chr6 41514061 41514359 -147765195 - AluY SINE Alu -13 298 1 10468 157 23 41 chr6 41514883 41516794 -147762760 + L1P LINE L1 25 1901 -4245 6949 59 40 7 chr6 41516794 41518391 -147761163 + L1PA6 LINE L1 4522 6149 -5 10468 157 23 41 chr6 41518391 41518429 -147761125 + L1P LINE L1 1901 1938 -4208 2262 115 3 0 chr6 41519452 41519756 -147759798 + AluSg SINE Alu 1 305 -5 257 221 13 0 chr6 41519865 41519942 -147759612 - MER116 DNA Mariner -1 79 2 1481 199 14 3 chr6 41520219 41520506 -147759048 - AluJb SINE Alu -20 292 3 974 308 114 62 chr6 41520732 41521265 -147758289 - L2 LINE L2 -1 3312 2808 1828 129 68 10 chr6 41521265 41521560 -147757994 - AluSq SINE Alu -1 312 1 974 308 114 62 chr6 41521560 41522455 -147757099 - L2 LINE L2 -505 2808 1813 186 289 113 21 chr6 41523211 41523353 -147756201 - MIR SINE MIR -18 244 90 2290 103 0 6 chr6 41523544 41523855 -147755699 - AluY SINE Alu -2 309 1 378 146 15 5 chr6 41523987 41524109 -147755445 - MER53 DNA DNA 0 189 1 673 206 37 101 chr6 41524870 41525012 -147754542 + MER20 DNA MER1_type 36 165 -54 2534 71 3 0 chr6 41525012 41525322 -147754232 + AluY SINE Alu 1 311 0 673 206 37 101 chr6 41525322 41525368 -147754186 + MER20 DNA MER1_type 165 212 -7 221 265 0 0 chr6 41525846 41525895 -147753659 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 2004 91 8 0 chr6 41525988 41526251 -147753303 - AluSc SINE Alu -13 296 32 2244 118 7 0 chr6 41526306 41526612 -147752942 + AluSx SINE Alu 1 308 -4 336 325 75 86 chr6 41526647 41527004 -147752550 + L2 LINE L2 2715 3062 -251 23 0 0 0 chr6 41528560 41528583 -147750971 + AT_rich Low_complexity Low_complexity 1 23 0 2250 98 0 14 chr6 41528852 41529147 -147750407 + AluY SINE Alu 1 291 -20 1915 151 3 0 chr6 41529827 41530119 -147749435 - AluSg SINE Alu -17 293 1 381 291 103 12 chr6 41530252 41530417 -147749137 - MIR SINE MIR -75 187 8 2922 35 21 3 chr6 41530491 41530829 -147748725 - LTR14A LTR ERVK 0 344 1 11415 61 16 10 chr6 41530848 41532283 -147747271 - HERVK14 LTR ERVK -86 5859 4416 9923 50 3 0 chr6 41532282 41533451 -147746103 - HERVK14 LTR ERVK -2946 2999 1828 * 2390 142 3 3 chr6 41535029 41535389 -147744165 - HERVK14 LTR ERVK -5583 362 3 2563 61 40 0 chr6 41535391 41535717 -147743837 - LTR14A LTR ERVK 0 344 6 305 336 66 7 chr6 41536597 41536734 -147742820 + MIR SINE MIR 50 194 -68 2383 73 3 0 chr6 41537260 41537549 -147742005 + AluY SINE Alu 1 290 -21 2195 108 10 10 chr6 41538485 41538792 -147740762 + AluSc SINE Alu 1 307 -2 677 127 51 0 chr6 41538890 41539008 -147740546 + L1MA8 LINE L1 6164 6287 -4 215 324 10 0 chr6 41544398 41544500 -147735054 + (TCTCTG)n Simple_repeat Simple_repeat 6 108 0 518 165 22 0 chr6 41544603 41544694 -147734860 - L1MD3 LINE L1 -13 7982 7890 848 302 13 15 chr6 41544708 41545238 -147734316 - SVA Other Other 0 1386 858 322 244 282 34 chr6 41646065 41646356 -147633198 + L2 LINE L2 2912 3274 -39 304 300 0 11 chr6 41646579 41646669 -147632885 - MER81 DNA DNA -22 92 4 2110 179 11 0 chr6 41646853 41647228 -147632326 + MLT1B LTR MaLR 1 379 -11 1417 199 52 0 chr6 41648368 41648695 -147630859 - L1MB5 LINE L1 -10 6164 5821 21 0 0 0 chr6 41649001 41649022 -147630532 + AT_rich Low_complexity Low_complexity 1 21 0 7209 78 7 40 chr6 41650389 41652186 -147627368 - L1PA7 LINE L1 -1 6153 4428 403 276 28 11 chr6 41652188 41652319 -147627235 - FRAM SINE Alu -9 157 55 302 320 55 20 chr6 41652661 41652861 -147626693 - MLT1L LTR MaLR -5 610 404 21 0 0 0 chr6 41654904 41654925 -147624629 + AT_rich Low_complexity Low_complexity 1 21 0 417 335 43 0 chr6 41655706 41655891 -147623663 - MIR SINE MIR -51 211 19 2324 100 0 7 chr6 41657817 41658118 -147621436 - AluSg SINE Alu -11 299 1 24 0 0 0 chr6 41658449 41658473 -147621081 + AT_rich Low_complexity Low_complexity 1 24 0 207 207 37 44 chr6 41658544 41658679 -147620875 + (TTATA)n Simple_repeat Simple_repeat 2 135 0 21 36 0 0 chr6 41658710 41658738 -147620816 + AT_rich Low_complexity Low_complexity 1 28 0 24 100 0 0 chr6 41659230 41659310 -147620244 + AT_rich Low_complexity Low_complexity 1 80 0 248 178 32 70 chr6 41659360 41659545 -147620009 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 29 60 0 0 chr6 41659582 41659632 -147619922 + AT_rich Low_complexity Low_complexity 1 50 0 207 302 112 15 chr6 41659887 41660092 -147619462 - L2 LINE L2 -167 3146 2922 3651 180 13 28 chr6 41661297 41661720 -147617834 + L1MB1 LINE L1 5408 5817 -351 2153 121 3 0 chr6 41661720 41662009 -147617545 + AluSg SINE Alu 1 290 -20 3651 180 13 28 chr6 41662009 41662296 -147617258 + L1MB1 LINE L1 5817 6107 -61 415 272 48 7 chr6 41662313 41662460 -147617094 + MIR SINE MIR 97 249 -13 497 292 83 35 chr6 41662491 41662925 -147616629 - L2 LINE L2 -137 3176 2712 1280 180 6 84 chr6 41662925 41663248 -147616306 - AluJb SINE Alu -14 298 1 497 292 83 35 chr6 41663248 41663272 -147616282 - L2 LINE L2 -601 2712 2691 289 185 36 0 chr6 41663272 41663334 -147616220 + L1MB1 LINE L1 6103 6166 -2 1670 156 184 19 chr6 41666841 41667206 -147612348 + MSTA LTR MaLR 1 425 -3 257 200 50 100 chr6 41667676 41667756 -147611798 - L1ME LINE L1 -476 5694 5619 658 129 89 0 chr6 41667847 41667971 -147611583 - L1MD1 LINE L1 0 6242 6108 3472 264 27 17 chr6 41667971 41669353 -147610201 - L1 LINE L1 -3115 4450 3045 1317 118 0 0 chr6 41669353 41669531 -147610023 - LTR1 LTR ERV1 0 785 608 1235 191 107 105 chr6 41672374 41672803 -147606751 - MLT1C LTR MaLR -4 463 34 489 237 23 0 chr6 41673247 41673378 -147606176 + MER94 DNA DNA 1 134 0 1952 182 14 6 chr6 41673682 41674044 -147605510 - MLT1A1 LTR MaLR 0 365 1 1415 234 89 30 chr6 41678202 41678638 -147600916 - MLT1C LTR MaLR 0 467 6 188 235 39 0 chr6 41678980 41679031 -147600523 - MIR SINE MIR -62 146 94 241 207 12 24 chr6 41679660 41679742 -147599812 - L1M4 LINE L1 -3166 2980 2900 572 286 48 31 chr6 41680488 41680951 -147598603 + HERV16 LTR ERVL 596 1091 -3905 2340 112 21 21 chr6 41681355 41681730 -147597824 - THE1C LTR MaLR 0 375 1 1894 134 0 8 chr6 41681768 41682029 -147597525 + AluSx SINE Alu 2 260 -52 269 265 2 0 chr6 41682039 41682096 -147597458 + L1MC1 LINE L1 6240 6293 -40 2210 125 0 0 chr6 41682385 41682690 -147596864 - AluSx SINE Alu -7 305 1 4761 151 52 23 chr6 41683318 41685103 -147594451 + L1PA15 LINE L1 4351 6164 -1 1042 290 60 37 chr6 41685196 41685852 -147593702 + L1MEc LINE L1 1393 2063 -4333 201 122 27 68 chr6 41685907 41685981 -147593573 + A-rich Low_complexity Low_complexity 1 71 0 531 263 96 50 chr6 41686528 41687040 -147592514 + L1M3 LINE L1 713 1250 -5296 386 229 115 0 chr6 41687047 41687143 -147592411 + MLT2B3 LTR ERVL 125 231 -323 840 236 137 19 chr6 41687143 41687465 -147592089 + L1ME LINE L1 5400 5759 -407 587 232 0 7 chr6 41687464 41687602 -147591952 + L1M3 LINE L1 5295 5431 -1213 * 302 29 0 0 chr6 41687655 41687690 -147591864 + U2 snRNA snRNA 1 35 -153 1301 208 85 11 chr6 41687720 41688200 -147591354 + L1M3 LINE L1 5434 5941 -721 1032 179 73 5 chr6 41688192 41688384 -147591170 + L1MA9 LINE L1 6041 6251 -61 * 1921 107 7 4 chr6 41688384 41688654 -147590900 + AluSx SINE Alu 38 308 -4 1032 179 73 5 chr6 41688654 41688679 -147590875 + L1MA9 LINE L1 6251 6273 -39 2096 133 3 0 chr6 41688697 41688990 -147590564 + AluSx SINE Alu 1 294 -18 2452 39 43 0 chr6 41688990 41689271 -147590283 + AluY SINE Alu 1 294 -17 250 213 0 0 chr6 41689286 41689333 -147590221 + L1M3 LINE L1 5923 5969 -709 * 588 185 15 0 chr6 41689329 41689459 -147590095 + L1ME2 LINE L1 5611 5742 -422 1351 257 73 75 chr6 41689467 41690027 -147589527 - MLT1F1 LTR MaLR -8 559 1 1760 199 38 28 chr6 41690027 41690449 -147589105 + L1ME2 LINE L1 5738 6163 -1 455 306 31 19 chr6 41690923 41691083 -147588471 + MIR SINE MIR 14 175 -87 389 274 127 0 chr6 41691397 41691554 -147588000 + MIR SINE MIR 57 233 -29 24 0 0 0 chr6 41692938 41692962 -147586592 + AT_rich Low_complexity Low_complexity 1 24 0 2094 106 0 47 chr6 41692967 41693268 -147586286 - AluSq SINE Alu -26 287 1 322 283 94 36 chr6 41693268 41693544 -147586010 + L1MC4 LINE L1 7748 8039 -3 21 0 0 0 chr6 41693701 41693722 -147585832 + AT_rich Low_complexity Low_complexity 1 21 0 202 229 16 16 chr6 41695594 41695655 -147583899 + GA-rich Low_complexity Low_complexity 1 61 0 2572 221 25 7 chr6 41695822 41696374 -147583180 + REP3 LTR ERV 1 562 0 1822 202 23 8 chr6 41696420 41696771 -147582783 - MLT1A1 LTR MaLR -3 362 7 554 265 50 42 chr6 41697716 41698035 -147581519 + L1MEc LINE L1 1883 2168 -4372 3947 145 28 2 chr6 41698155 41698774 -147580780 + MER41B LTR ERV1 1 635 0 3404 246 27 55 chr6 41698776 41699949 -147579605 + L1M4 LINE L1 2 1141 -5401 1347 168 15 4 chr6 41700090 41700352 -147579202 + MLT1B LTR MaLR 115 379 -11 1697 263 21 26 chr6 41701457 41702112 -147577442 - L1M4 LINE L1 -866 5280 4629 1015 217 40 52 chr6 41702151 41702478 -147577076 + L1M4 LINE L1 4283 4605 -2039 495 334 12 15 chr6 41702520 41702846 -147576708 - L1MEc LINE L1 -4621 1775 1451 278 267 85 28 chr6 41702879 41703055 -147576499 + L1M4 LINE L1 5245 5430 -1214 1020 221 46 63 chr6 41703543 41704000 -147575554 + Charlie1b DNA MER1_type 37 485 -38 1247 218 56 24 chr6 41704674 41705031 -147574523 + MLT1B LTR MaLR 25 396 0 1369 47 0 0 chr6 41706663 41706835 -147572719 - L1PA4 LINE L1 -591 5564 5393 * 4787 41 0 3 chr6 41706825 41707483 -147572071 + L1PA4 LINE L1 5545 6155 0 231 240 153 45 chr6 41709239 41709549 -147570005 + L2 LINE L2 2853 3252 -61 13002 198 34 19 chr6 41709549 41712892 -147566662 + L1PA12 LINE L1 2802 6206 -1378 21 57 0 0 chr6 41713777 41713812 -147565742 + AT_rich Low_complexity Low_complexity 1 35 0 1947 137 14 0 chr6 41715081 41715366 -147564188 + AluSx SINE Alu 12 300 -12 21 36 0 0 chr6 41715478 41715506 -147564048 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr6 41716960 41716988 -147562566 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 41717524 41717545 -147562009 + AT_rich Low_complexity Low_complexity 1 21 0 405 261 96 27 chr6 41717897 41718085 -147561469 - MLT1G LTR MaLR -1 589 389 8171 201 45 30 chr6 41718222 41721005 -147558549 + L1MA9 LINE L1 3477 6305 -7 1840 175 53 42 chr6 41721031 41721733 -147557821 + L1MCa LINE L1 1127 1927 -4499 232 172 52 0 chr6 41721740 41721798 -147557756 + L1MCa LINE L1 1998 2058 -4368 * 2214 136 5 22 chr6 41721794 41722198 -147557356 - L1P5 LINE L1 -411 5745 5349 1496 189 0 6 chr6 41722193 41722521 -147557033 + L1P5 LINE L1 5008 5333 -813 * 290 285 39 0 chr6 41722890 41723020 -147556534 + LTR67 LTR ERVL 411 545 -12 529 168 88 16 chr6 41723099 41723224 -147556330 + THE1C LTR MaLR 1 134 -241 247 300 10 30 chr6 41723237 41723337 -147556217 + MLT1J LTR MaLR 346 443 -68 292 280 0 51 chr6 41723564 41723682 -147555872 + L1MC4 LINE L1 7336 7447 -595 511 211 66 119 chr6 41723727 41724154 -147555400 + L1MC5 LINE L1 7508 7911 -50 21 57 0 0 chr6 41724545 41724580 -147554974 + AT_rich Low_complexity Low_complexity 1 35 0 2314 89 6 0 chr6 41724614 41724927 -147554627 + L1PA13 LINE L1 5844 6158 -5 191 36 36 0 chr6 41726119 41726147 -147553407 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 274 256 24 143 chr6 41726785 41726858 -147552696 - L2 LINE L2 -216 3056 3013 2557 64 0 6 chr6 41726858 41727169 -147552385 + AluY SINE Alu 1 309 -2 274 256 24 143 chr6 41727169 41727263 -147552291 - L2 LINE L2 -259 3013 2909 283 435 36 0 chr6 41727768 41727906 -147551648 - L2 LINE L2 -14 3258 3116 244 348 101 40 chr6 41728138 41728365 -147551189 - L2 LINE L2 -436 2878 2638 237 296 8 104 chr6 41728760 41728885 -147550669 - L3 LINE CR1 -42 1535 1423 1902 119 24 7 chr6 41728905 41729199 -147550355 + L1PB4 LINE L1 5852 6150 -6 24 0 0 0 chr6 41729569 41729593 -147549961 + AT_rich Low_complexity Low_complexity 1 24 0 5363 151 26 11 chr6 41731437 41732826 -147546728 - L1MA8 LINE L1 -5 6286 4874 836 158 19 0 chr6 41732823 41732981 -147546573 - L1MA8 LINE L1 -2238 3908 3748 * 2687 237 11 27 chr6 41734405 41735068 -147544486 - MER82 DNA MER2_type -1 652 1 393 294 84 8 chr6 41735074 41735193 -147544361 - MIR SINE MIR -65 143 16 3162 24 0 0 chr6 41735362 41735743 -147543811 + L1P2 LINE L1 5433 5813 -342 774 237 77 67 chr6 41735751 41736126 -147543428 - L1MC4 LINE L1 -214 7828 7450 21 36 0 0 chr6 41736472 41736500 -147543054 + AT_rich Low_complexity Low_complexity 1 28 0 199 339 27 45 chr6 41738152 41738264 -147541290 - MIR SINE MIR -128 134 25 456 316 26 94 chr6 41739857 41739978 -147539576 + MIR SINE MIR 5 133 -129 2106 118 44 0 chr6 41739978 41740299 -147539255 - L1PA15 LINE L1 -6 6159 5825 195 42 0 0 chr6 41740306 41740330 -147539224 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 456 316 26 94 chr6 41740330 41740466 -147539088 + MIR SINE MIR 139 252 -10 1594 52 0 0 chr6 41741451 41741642 -147537912 + AluY SINE Alu 114 304 -7 1574 247 136 21 chr6 41741648 41742531 -147537023 + L1ME3A LINE L1 3685 4668 -1478 928 237 63 19 chr6 41742603 41742919 -147536635 + L1ME3A LINE L1 5428 5757 -413 391 184 68 19 chr6 41742980 41743083 -147536471 + L1ME3A LINE L1 6048 6155 -15 379 313 73 30 chr6 41743093 41743326 -147536228 + L1MC/D LINE L1 5032 5274 -872 369 183 0 21 chr6 41743379 41743472 -147536082 + L1MC/D LINE L1 5338 5428 -2380 2317 241 60 86 chr6 41743674 41744663 -147534891 + L1MD2 LINE L1 142 1104 -5439 1313 218 18 29 chr6 41744662 41745048 -147534506 + L1MD2 LINE L1 1313 1694 -4846 * 3933 234 70 16 chr6 41745141 41747640 -147531914 + L1MD2 LINE L1 4067 6710 -43 252 307 16 8 chr6 41747993 41748120 -147531434 + (TA)n Simple_repeat Simple_repeat 2 129 0 1831 185 10 0 chr6 41748641 41748939 -147530615 - AluSx SINE Alu -11 301 1 527 234 0 0 chr6 41749388 41749495 -147530059 + L1MC/D LINE L1 5665 5771 -588 464 356 172 4 chr6 41749512 41750059 -147529495 + L2 LINE L2 2334 2972 -342 2586 64 0 0 chr6 41750074 41750385 -147529169 - AluY SINE Alu 0 311 1 1008 291 86 39 chr6 41750464 41750952 -147528602 + L2 LINE L2 715 1225 -2089 1098 189 8 29 chr6 41750989 41751227 -147528327 + L1M3e LINE L1 1728 1960 -5070 965 318 163 13 chr6 41751254 41751808 -147527746 + L2 LINE L2 1310 1946 -1368 8404 219 74 2 chr6 41753955 41755730 -147523824 - L1M2 LINE L1 -4944 1905 2 1848 115 67 11 chr6 41755833 41756143 -147523411 - AluSx SINE Alu 0 312 1 614 327 45 5 chr6 41756565 41756785 -147522769 + MIR SINE MIR 31 259 -3 812 216 5 44 chr6 41756801 41757005 -147522549 + AluJo SINE Alu 117 312 0 30 59 0 0 chr6 41757006 41757057 -147522497 + AT_rich Low_complexity Low_complexity 1 51 0 27 29 0 0 chr6 41757282 41757316 -147522238 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr6 41757589 41757622 -147521932 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr6 41758422 41758450 -147521104 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr6 41761812 41761835 -147517719 + AT_rich Low_complexity Low_complexity 1 23 0 1038 250 80 9 chr6 41762105 41762429 -147517125 - L1MC4a LINE L1 -1942 5866 5520 537 232 56 14 chr6 41763937 41764079 -147515475 - MLT1G LTR MaLR -1 589 442 366 23 0 0 chr6 41764084 41764127 -147515427 + (TC)n Simple_repeat Simple_repeat 1 43 0 369 237 101 8 chr6 41764243 41764368 -147515186 - MLT1H1 LTR MaLR -361 188 1 349 315 61 90 chr6 41764381 41764727 -147514827 - MLT1H1-int LTR MaLR -14 1357 1022 1922 155 3 19 chr6 41764806 41765122 -147514432 - AluSx SINE Alu -1 311 1 1862 200 49 30 chr6 41765279 41765773 -147513781 - L1 LINE L1 -1347 5759 5257 4194 212 62 13 chr6 41765792 41767277 -147512277 + L1MA10 LINE L1 4757 6323 -11 713 199 72 18 chr6 41767735 41767901 -147511653 + MLT2B1 LTR ERVL 3 177 -343 272 159 0 0 chr6 41767899 41767943 -147511611 + MLT2C2 LTR ERVL 421 464 0 * 1462 327 68 17 chr6 41768194 41769248 -147510306 + HERV16 LTR ERVL 900 2072 -2924 969 318 163 13 chr6 41769870 41770424 -147509130 - L2 LINE L2 -1368 1946 1310 1074 193 8 29 chr6 41770451 41770689 -147508865 - L1 LINE L1 -5070 1960 1728 1008 291 86 39 chr6 41770726 41771214 -147508340 - L2 LINE L2 -2089 1225 715 2496 64 0 0 chr6 41771293 41771591 -147507963 + AluY SINE Alu 1 298 -13 452 356 172 4 chr6 41771606 41772153 -147507401 - L2 LINE L2 -342 2972 2334 527 234 0 0 chr6 41772170 41772277 -147507277 - L1MC/D LINE L1 -588 5771 5665 1797 184 10 0 chr6 41772726 41773025 -147506529 + AluSx SINE Alu 1 302 -10 243 309 16 8 chr6 41773546 41773672 -147505882 + (TA)n Simple_repeat Simple_repeat 2 128 0 305 294 92 12 chr6 41773672 41773835 -147505719 - L1MC/D LINE L1 -1993 5815 5640 4355 234 69 16 chr6 41774026 41776527 -147503027 - L1MD2 LINE L1 -43 6710 4067 1434 215 18 29 chr6 41776620 41777006 -147502548 - L1MD2 LINE L1 -4846 1694 1313 * 2659 216 83 111 chr6 41777005 41777996 -147501558 - L1MD2 LINE L1 -5439 1104 142 390 183 0 21 chr6 41778198 41778291 -147501263 - L1MC/D LINE L1 -2380 5428 5338 24 0 0 0 chr6 41778332 41778356 -147501198 + AT_rich Low_complexity Low_complexity 1 24 0 438 175 68 19 chr6 41778587 41778690 -147500864 - L1ME3A LINE L1 -15 6224 6117 1021 221 85 18 chr6 41778736 41779067 -147500487 - L1ME3A LINE L1 -382 5849 5497 2824 286 83 21 chr6 41779139 41780028 -147499526 - L1ME3A LINE L1 -1478 4737 3904 2503 59 0 0 chr6 41780028 41780333 -147499221 - AluY SINE Alu -6 305 1 2824 286 83 21 chr6 41780333 41780896 -147498658 - L1ME3A LINE L1 -2311 3904 3377 204 97 0 0 chr6 41780896 41780927 -147498627 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 2824 286 83 21 chr6 41780927 41781497 -147498057 - L1ME3A LINE L1 -2838 3377 2558 285 29 0 0 chr6 41781653 41781687 -147497867 + (TTA)n Simple_repeat Simple_repeat 1 34 0 280 332 83 18 chr6 41783570 41783799 -147495755 - L2 LINE L2 -14 3299 3056 227 216 0 0 chr6 41783818 41783855 -147495699 + MER21B LTR ERV1 59 95 -768 667 148 9 0 chr6 41784061 41784176 -147495378 - L1MA9 LINE L1 0 6312 6197 316 161 0 16 chr6 41784203 41784265 -147495289 - L1MA4 LINE L1 -217 6083 6023 288 253 11 0 chr6 41784261 41784348 -147495206 - L1ME3A LINE L1 -4088 2308 2221 * 2301 279 60 21 chr6 41784357 41785624 -147493930 - L1MEd LINE L1 -4145 2251 904 237 216 103 10 chr6 41785772 41785869 -147493685 - L1MEd LINE L1 -6241 155 50 794 134 0 30 chr6 41786066 41786200 -147493354 - FLAM_C SINE Alu -3 130 1 5190 142 33 7 chr6 41786615 41787879 -147491675 + L1PA16 LINE L1 4870 6156 -10 40 37 0 0 chr6 41787879 41787933 -147491621 + AT_rich Low_complexity Low_complexity 1 54 0 514 300 148 30 chr6 41791163 41791466 -147488088 + L2 LINE L2 2034 2372 -942 28603 124 11 64 chr6 41791483 41793006 -147486548 - L1PA8 LINE L1 0 6172 4570 2910 0 0 0 chr6 41793006 41793317 -147486237 - AluYa5 SINE Alu 0 311 1 28603 124 11 64 chr6 41793317 41798311 -147481243 - L1PA8 LINE L1 -1602 4570 12 249 314 21 89 chr6 41798463 41798654 -147480900 + MIR SINE MIR 81 258 -4 4107 163 29 0 chr6 41798783 41799509 -147480045 - L1MA7 LINE L1 -44 6247 5501 21 36 0 0 chr6 41800042 41800070 -147479484 + AT_rich Low_complexity Low_complexity 1 28 0 369 322 28 21 chr6 41800461 41800604 -147478950 + MIR SINE MIR 72 215 -47 222 242 34 88 chr6 41804268 41804466 -147475088 + L2 LINE L2 3039 3291 -22 20492 125 19 4 chr6 41804466 41808595 -147470959 + L1PA10 LINE L1 1975 6164 -4 3830 124 68 81 chr6 41809451 41810246 -147469308 + LTR1 LTR ERV1 1 785 0 5676 160 40 13 chr6 41810602 41812653 -147466901 - L1MA8 LINE L1 -10 6281 4186 204 390 20 20 chr6 41812840 41812986 -147466568 + MIR SINE MIR 5 150 -112 409 330 122 17 chr6 41813069 41813299 -147466255 - MIR SINE MIR -7 255 2 1725 164 35 57 chr6 41815022 41815394 -147464160 + THE1B LTR MaLR 1 364 0 2339 152 59 51 chr6 41816239 41816764 -147462790 + L1MA10 LINE L1 5806 6334 0 1842 113 75 39 chr6 41816800 41817162 -147462392 - THE1C LTR MaLR 0 375 1 2666 27 0 0 chr6 41817886 41818187 -147461367 - AluYa5 SINE Alu -10 301 1 565 313 27 20 chr6 41819085 41819379 -147460175 - L1ME1 LINE L1 0 6166 5871 269 322 35 0 chr6 41819978 41820065 -147459489 - L2 LINE L2 -1403 1911 1822 327 175 16 0 chr6 41820263 41820326 -147459228 - MER20 DNA MER1_type 0 219 156 201 255 0 0 chr6 41820326 41820377 -147459177 - MIR SINE MIR -122 140 90 10791 223 20 29 chr6 41820771 41822588 -147456966 - L1PBb LINE L1 -1343 6241 4410 3773 45 0 2 chr6 41822588 41823051 -147456503 + L1PA5 LINE L1 5684 6145 -9 10791 223 20 29 chr6 41823051 41825406 -147454148 - L1PBb LINE L1 -3174 4410 1867 422 304 20 7 chr6 41825402 41825550 -147454004 - L1PBb LINE L1 -7431 150 1 * 2161 100 3 7 chr6 41825615 41825906 -147453648 + AluSc SINE Alu 1 290 -19 837 187 48 0 chr6 41826024 41826190 -147453364 + FAM SINE Alu 2 175 0 2098 123 0 7 chr6 41828951 41829235 -147450319 + AluSx SINE Alu 5 286 -26 22 0 0 0 chr6 41830393 41830415 -147449139 + AT_rich Low_complexity Low_complexity 1 22 0 976 144 0 7 chr6 41830529 41830675 -147448879 - AluSg/x SINE Alu -19 291 147 663 255 26 42 chr6 41832546 41832738 -147446816 - MER5A DNA MER1_type 0 189 1 22 0 0 0 chr6 41833123 41833145 -147446409 + AT_rich Low_complexity Low_complexity 1 22 0 279 228 0 0 chr6 41833247 41833304 -147446250 - L2 LINE L2 -1 3312 3256 286 260 193 31 chr6 41833693 41833824 -147445730 + MIR SINE MIR 33 181 -27 6732 134 9 6 chr6 41833896 41835563 -147443991 + L1PB1 LINE L1 4477 6150 -1 2879 222 94 22 chr6 41835548 41836463 -147443091 + L1MC4 LINE L1 7061 8041 -1 * 201 74 0 0 chr6 41836470 41836497 -147443057 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 396 221 21 0 chr6 41836506 41836601 -147442953 + L1M4 LINE L1 3586 3682 -2464 189 74 0 0 chr6 41836602 41836629 -147442925 + (CA)n Simple_repeat Simple_repeat 2 28 0 374 262 101 42 chr6 41836632 41836918 -147442636 + L1M4 LINE L1 3882 4184 -1962 933 249 47 17 chr6 41837021 41837383 -147442171 + L1M4 LINE L1 4391 4763 -1383 560 296 139 27 chr6 41837425 41837827 -147441727 + L1ME1 LINE L1 2951 3397 -2749 481 371 102 12 chr6 41837858 41838200 -147441354 + L2 LINE L2 2880 3252 -61 309 299 15 44 chr6 41838234 41838371 -147441183 + L1ME1 LINE L1 3872 4004 -2142 374 248 56 56 chr6 41838560 41838685 -147440869 + MLT1G1 LTR MaLR 247 371 -224 252 258 30 0 chr6 41838739 41838805 -147440749 + MLT1G1 LTR MaLR 488 555 0 598 314 92 42 chr6 41838844 41839006 -147440548 + L1ME1 LINE L1 4074 4226 -1920 2531 44 0 3 chr6 41839006 41839304 -147440250 + AluY SINE Alu 1 297 -14 598 314 92 42 chr6 41839304 41840405 -147439149 + L1ME1 LINE L1 4226 5400 -746 341 169 0 22 chr6 41840918 41841007 -147438547 + CT-rich Low_complexity Low_complexity 3 89 0 1739 207 61 71 chr6 41841279 41841787 -147437767 - MER77 LTR ERV1 -102 503 1 769 314 28 8 chr6 41841894 41842146 -147437408 + MIR SINE MIR 6 262 0 360 246 0 27 chr6 41842288 41842398 -147437156 + L1MC4a LINE L1 7695 7801 -7 370 323 85 32 chr6 41842405 41842922 -147436632 + L1ME1 LINE L1 5433 5961 -205 2182 243 59 54 chr6 41843296 41843628 -147435926 + L1MC/D LINE L1 4409 4738 -1498 2445 49 0 3 chr6 41843628 41843914 -147435640 + AluY SINE Alu 6 290 -21 2182 243 59 54 chr6 41843914 41844220 -147435334 + L1MC/D LINE L1 4738 5041 -1195 1799 130 6 93 chr6 41844220 41844543 -147435011 + AluSx SINE Alu 1 295 -17 2182 243 59 54 chr6 41844543 41844979 -147434575 + L1MC/D LINE L1 5041 5489 -747 707 85 0 0 chr6 41844981 41845075 -147434479 - AluY SINE Alu -217 94 1 2864 115 0 0 chr6 41845140 41845548 -147434006 + L1PA7 LINE L1 1 408 -6053 * 16504 92 6 3 chr6 41845543 41847915 -147431639 + L1PA7 LINE L1 3287 5665 -796 1407 130 5 5 chr6 41847923 41848130 -147431424 - AluSc SINE Alu -102 207 1 6182 65 4 13 chr6 41848132 41848956 -147430598 + L1PA7 LINE L1 5654 6469 0 206 132 0 26 chr6 41849462 41849500 -147430054 + (CA)n Simple_repeat Simple_repeat 2 38 0 279 330 97 39 chr6 41849554 41849760 -147429794 + MIR SINE MIR 36 253 -9 21 0 0 0 chr6 41852007 41852028 -147427526 + AT_rich Low_complexity Low_complexity 1 21 0 262 163 0 0 chr6 41853552 41853601 -147425953 - L1PA15 LINE L1 -16 6149 6101 204 97 0 0 chr6 41853942 41853973 -147425581 + (TG)n Simple_repeat Simple_repeat 2 32 0 498 0 27 40 chr6 41854068 41854143 -147425411 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 267 345 58 35 chr6 41854289 41854550 -147425004 + L2 LINE L2 1831 2097 -1217 2436 87 3 0 chr6 41855353 41855662 -147423892 + AluSx SINE Alu 1 310 -2 222 371 22 0 chr6 41855925 41856014 -147423540 + L2 LINE L2 3174 3264 -8 259 368 76 11 chr6 41856618 41856803 -147422751 - L3 LINE CR1 -2 1575 1379 10048 28 9 0 chr6 41856806 41858783 -147420771 - L1PA4 LINE L1 -3 6152 4166 234 158 0 0 chr6 41858805 41858843 -147420711 - L1MB1 LINE L1 -30 6159 6122 27 49 0 0 chr6 41858850 41858891 -147420663 + AT_rich Low_complexity Low_complexity 1 41 0 247 99 56 14 chr6 41858946 41859017 -147420537 + (TA)n Simple_repeat Simple_repeat 1 74 0 25 75 0 0 chr6 41859707 41859760 -147419794 + AT_rich Low_complexity Low_complexity 1 53 0 27 29 0 0 chr6 41859878 41859912 -147419642 + AT_rich Low_complexity Low_complexity 1 34 0 994 110 0 0 chr6 41860212 41860348 -147419206 + AluJb SINE Alu 1 136 -176 321 226 20 69 chr6 41860357 41860459 -147419095 - L1MEc LINE L1 -2979 3236 3140 3013 118 31 4 chr6 41860460 41860945 -147418609 - Tigger1 DNA MER2_type -1718 700 203 3281 50 5 9 chr6 41860953 41861397 -147418157 - LTR7 LTR ERV1 -8 442 1 869 160 155 0 chr6 41861397 41861575 -147417979 - Tigger1 DNA MER2_type -2211 207 2 2020 201 124 68 chr6 41861606 41862428 -147417126 - MER52A LTR ERV1 -737 1018 151 1551 248 110 52 chr6 41862632 41863299 -147416255 - L1MEc LINE L1 -5289 1107 389 1912 131 70 25 chr6 41863299 41863658 -147415896 - THE1C LTR MaLR 0 375 1 1551 248 110 52 chr6 41863658 41863755 -147415799 - L1MEc LINE L1 -6007 389 299 209 235 20 0 chr6 41863822 41863873 -147415681 + L2 LINE L2 3262 3313 0 40 49 0 0 chr6 41863938 41863999 -147415555 + AT_rich Low_complexity Low_complexity 1 61 0 26 30 0 0 chr6 41864364 41864397 -147415157 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr6 41867981 41868002 -147411552 + AT_rich Low_complexity Low_complexity 1 21 0 895 122 8 0 chr6 41868003 41868126 -147411428 - FLAM_C SINE Alu -19 124 1 1938 267 51 30 chr6 41868737 41869459 -147410095 + L2 LINE L2 1271 2007 -1307 22 0 0 0 chr6 41870761 41870783 -147408771 + AT_rich Low_complexity Low_complexity 1 22 0 1107 216 0 14 chr6 41871094 41871316 -147408238 + MER20 DNA MER1_type 1 219 0 206 103 0 26 chr6 41871787 41871826 -147407728 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 187 386 101 16 chr6 41875677 41875983 -147403571 + L2 LINE L2 1164 1495 -1819 250 263 119 34 chr6 41876219 41876337 -147403217 - Charlie8 DNA MER1_type -2177 240 113 885 28 0 0 chr6 41876363 41876469 -147403085 + L1PA2 LINE L1 6050 6155 0 1315 272 47 17 chr6 41876661 41877253 -147402301 - L1ME3A LINE L1 -232 5938 5329 427 284 72 28 chr6 41877515 41877878 -147401676 + L1M4 LINE L1 3868 4246 -1900 361 241 80 70 chr6 41877888 41878075 -147401479 + L1M4 LINE L1 4519 4707 -1439 2324 219 36 11 chr6 41878076 41878628 -147400926 - MER4D LTR ERV1 0 903 338 * 2863 107 8 30 chr6 41878626 41878856 -147400698 + MER4D LTR ERV1 133 349 -554 2816 159 39 76 chr6 41878856 41879491 -147400063 - LTR9 LTR ERV1 0 612 1 2863 107 8 30 chr6 41879491 41879729 -147399825 + MER4D LTR ERV1 349 591 -312 2458 141 59 15 chr6 41879729 41880190 -147399364 - L1PA14 LINE L1 0 6161 5681 1384 162 0 5 chr6 41880199 41880421 -147399133 - AluJb SINE Alu -14 298 78 2984 84 0 14 chr6 41880459 41880899 -147398655 - L1PA14 LINE L1 -474 5687 5254 * 3219 202 20 27 chr6 41880896 41881703 -147397851 - L1PA14 LINE L1 -1214 4932 4132 380 142 0 52 chr6 41881713 41881847 -147397707 + (TA)n Simple_repeat Simple_repeat 2 128 0 28664 113 9 11 chr6 41881851 41887412 -147392142 - L1PA7 LINE L1 -9 6145 600 231 196 18 0 chr6 41887602 41887658 -147391896 - L1MA5 LINE L1 -10 6290 6234 435 95 14 0 chr6 41887666 41887740 -147391814 + L1MA4 LINE L1 6102 6176 -124 1065 238 39 10 chr6 41888027 41888334 -147391220 + L1P4 LINE L1 3310 3625 -2521 2443 128 41 16 chr6 41888335 41888774 -147390780 - LTR7 LTR ERV1 0 450 1 4396 115 7 15 chr6 41888774 41889498 -147390056 - HERVH LTR ERV1 0 7713 6996 * 14579 196 14 20 chr6 41889492 41894632 -147384922 - HERVH LTR ERV1 -1878 5835 791 891 202 30 53 chr6 41894687 41895225 -147384329 - HERVH LTR ERV1 -7254 459 1 2210 145 45 27 chr6 41895225 41895667 -147383887 - LTR7 LTR ERV1 0 450 1 4392 195 12 19 chr6 41895667 41896640 -147382914 + L1P4 LINE L1 3622 4588 -1558 467 133 89 0 chr6 41896650 41896740 -147382814 + MER4A LTR ERV1 1 98 -566 1621 139 11 72 chr6 41896740 41897108 -147382446 + MER4A LTR ERV1 261 664 0 2549 205 12 49 chr6 41897112 41897248 -147382306 + L1P4 LINE L1 4599 4738 -1408 279 0 0 0 chr6 41897248 41897279 -147382275 + (CA)n Simple_repeat Simple_repeat 2 32 0 2549 205 12 49 chr6 41897279 41897873 -147381681 + L1P4 LINE L1 4738 5302 -844 1705 119 15 0 chr6 41897865 41898134 -147381420 + L1P4 LINE L1 5510 5782 -384 * 2193 100 10 0 chr6 41898135 41898426 -147381128 + AluSc SINE Alu 1 294 -15 5783 220 99 24 chr6 41898432 41900466 -147379088 - L1M4c LINE L1 -4734 2225 43 391 310 150 42 chr6 41900743 41901195 -147378359 + L1MC/D LINE L1 5298 5798 -2010 24 96 0 0 chr6 41901393 41901466 -147378088 + AT_rich Low_complexity Low_complexity 1 73 0 363 311 30 18 chr6 41902885 41903052 -147376502 - ERVL LTR ERVL -3916 1848 1680 2097 170 23 0 chr6 41903052 41903399 -147376155 - MLT1A1 LTR MaLR 0 365 11 494 181 181 6 chr6 41904124 41904284 -147375270 - L1ME LINE L1 -717 5445 5258 233 289 52 22 chr6 41904334 41904469 -147375085 - L1P LINE L1 -2385 3761 3623 44 75 0 0 chr6 41904809 41904902 -147374652 + AT_rich Low_complexity Low_complexity 1 93 0 2095 78 58 0 chr6 41905172 41905466 -147374088 - AluY SINE Alu 0 311 1 1907 147 54 78 chr6 41905857 41906355 -147373199 + LTR19A LTR ERV1 1 486 0 1630 156 99 6 chr6 41907548 41907862 -147371692 + MER61A LTR ERV1 1 343 0 2093 97 17 13 chr6 41907902 41908200 -147371354 - THE1B LTR MaLR -65 299 1 603 257 109 43 chr6 41908202 41908438 -147371116 + L1MB7 LINE L1 4801 5020 -1164 1009 156 83 5 chr6 41908438 41908643 -147370911 - MER58A DNA MER1_type -3 221 1 603 257 109 43 chr6 41908643 41909457 -147370097 + L1MB7 LINE L1 5020 5907 -277 21 0 0 0 chr6 41909457 41909478 -147370076 + AT_rich Low_complexity Low_complexity 1 21 0 300 256 154 26 chr6 41909693 41909810 -147369744 - HAL1 LINE L1 -1168 1339 1208 40 0 0 0 chr6 41911177 41911217 -147368337 + AT_rich Low_complexity Low_complexity 1 40 0 704 258 91 62 chr6 41912348 41912895 -147366659 - L1MCa LINE L1 -5030 1396 834 1105 106 12 0 chr6 41912909 41913070 -147366484 - AluSg/x SINE Alu 0 312 150 1808 174 16 47 chr6 41913139 41913525 -147366029 - MLT1A2 LTR MaLR 0 374 1 1799 247 39 10 chr6 41913525 41913934 -147365620 - MLT1A2-int LTR MaLR 0 1735 1315 344 229 0 14 chr6 41914103 41914173 -147365381 - MLT1A2-int LTR MaLR -992 743 675 349 215 0 0 chr6 41914234 41914299 -147365255 - MLT1A2-int LTR MaLR -488 883 819 2171 231 65 42 chr6 41914304 41914940 -147364614 - MLT1A2-int LTR MaLR -1081 654 5 1476 194 79 25 chr6 41914944 41915299 -147364255 - MLT1A2 LTR MaLR 0 374 1 43962 43 1 0 chr6 41916312 41922460 -147357094 + L1PA4 LINE L1 3 6152 -3 24 67 0 0 chr6 41922572 41922617 -147356937 + AT_rich Low_complexity Low_complexity 1 45 0 241 317 84 14 chr6 41923079 41923221 -147356333 - L1MC/D LINE L1 -301 5820 5684 5584 101 8 2 chr6 41924204 41925038 -147354516 - L1PA7 LINE L1 -2262 3884 3046 10208 94 26 9 chr6 41925038 41927254 -147352300 + L1PA7 LINE L1 3915 6149 -5 24 0 0 0 chr6 41927823 41927847 -147351707 + AT_rich Low_complexity Low_complexity 1 24 0 247 218 39 39 chr6 41927944 41928022 -147351532 + MIR SINE MIR 53 130 -132 995 153 47 6 chr6 41928406 41928576 -147350978 + AluSg/x SINE Alu 133 309 -3 210 169 46 15 chr6 41929159 41929224 -147350330 + CT-rich Low_complexity Low_complexity 4 70 0 311 0 26 0 chr6 41929909 41929948 -147349606 + (TA)n Simple_repeat Simple_repeat 2 41 0 2209 61 7 17 chr6 41929950 41930246 -147349308 - AluY SINE Alu -18 293 1 310 128 8 56 chr6 41931074 41931199 -147348355 + (TA)n Simple_repeat Simple_repeat 2 120 0 180 277 117 109 chr6 41931466 41931603 -147347951 - L2 LINE L2 -556 2758 2621 604 280 20 35 chr6 41932208 41932432 -147347122 - MIR SINE MIR 0 262 42 346 163 12 12 chr6 41934521 41934601 -147344953 + GA-rich Low_complexity Low_complexity 4 83 0 30 27 0 0 chr6 41935397 41935434 -147344120 + AT_rich Low_complexity Low_complexity 1 37 0 4996 32 2 5 chr6 41935453 41936054 -147343500 - L1PA4 LINE L1 0 6155 5557 226 310 0 0 chr6 41936686 41936757 -147342797 + GA-rich Low_complexity Low_complexity 1 71 0 1048 96 0 9 chr6 41937487 41937716 -147341838 - L1PA10 LINE L1 -622 5546 5199 4335 89 17 0 chr6 41937716 41938314 -147341240 + L1PA10 LINE L1 5556 6163 -5 2133 123 0 0 chr6 41938334 41938626 -147340928 + AluSg SINE Alu 1 292 -18 1363 236 10 3 chr6 41938790 41939087 -147340467 + MER21-int LTR ERV1 187 485 -3706 2497 120 13 11 chr6 41939087 41939461 -147340093 - THE1C LTR MaLR 0 375 1 7537 107 21 10 chr6 41939461 41940559 -147338995 - THE1C-int LTR MaLR 0 1580 471 1176 186 34 17 chr6 41940564 41940801 -147338753 + MER21-int LTR ERV1 3727 3967 -224 23 0 0 0 chr6 41941426 41941449 -147338105 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 41942848 41942870 -147336684 + AT_rich Low_complexity Low_complexity 1 22 0 319 348 11 11 chr6 41942995 41943173 -147336381 + CT-rich Low_complexity Low_complexity 2 179 0 430 290 27 71 chr6 41943185 41943409 -147336145 + MIR SINE MIR 49 262 0 293 110 77 0 chr6 41945197 41945288 -147334266 + (TA)n Simple_repeat Simple_repeat 1 98 0 1040 323 18 46 chr6 41945306 41945740 -147333814 - LTR16A LTR ERVL -11 439 18 1297 43 6 0 chr6 41945795 41945957 -147333597 + L1PA5 LINE L1 5983 6145 -9 412 328 71 16 chr6 41946282 41946465 -147333089 - ERVL LTR ERVL -826 4938 4746 1109 354 35 36 chr6 41946948 41947880 -147331674 - ERVL LTR ERVL -1555 4209 3279 1880 330 34 10 chr6 41947990 41948704 -147330850 - ERVL LTR ERVL -1954 3042 2312 198 167 0 0 chr6 41948800 41948836 -147330718 + (TA)n Simple_repeat Simple_repeat 2 37 0 1727 181 3 23 chr6 41948977 41949276 -147330278 - AluJb SINE Alu -19 293 1 22 56 0 0 chr6 41949433 41949469 -147330085 + AT_rich Low_complexity Low_complexity 1 36 0 2053 104 10 17 chr6 41949572 41949869 -147329685 + AluSp SINE Alu 1 295 -18 1761 166 0 3 chr6 41949922 41950234 -147329320 + AluJb SINE Alu 1 311 0 24 32 0 0 chr6 41950274 41950305 -147329249 + AT_rich Low_complexity Low_complexity 1 31 0 233 228 18 0 chr6 41950691 41950748 -147328806 + L1MB8 LINE L1 5851 5908 -213 1331 180 51 0 chr6 41950750 41951044 -147328510 + L1MB4 LINE L1 5866 6174 -6 488 121 0 0 chr6 41951062 41951145 -147328409 + L1MB8 LINE L1 6093 6175 -3 278 297 0 69 chr6 41952598 41952699 -147326855 - MIR SINE MIR 0 262 169 4308 74 16 6 chr6 41952722 41953679 -147325875 + L1P3 LINE L1 4762 5722 -432 269 56 0 0 chr6 41953665 41953701 -147325853 - L1P4 LINE L1 -585 5576 5541 * 685 190 73 0 chr6 41953750 41953887 -147325667 + MER52A LTR ERV1 1609 1755 0 1348 221 61 0 chr6 41953887 41954263 -147325291 + L1MD3 LINE L1 7582 7980 -15 567 42 0 0 chr6 41954390 41954462 -147325092 + L1P LINE L1 4243 4314 -1832 795 353 22 18 chr6 41954463 41954964 -147324590 + L1PA13 LINE L1 84 586 -6201 1080 230 4 0 chr6 41955200 41955457 -147324097 + L1P LINE L1 3681 3938 -2208 6828 182 56 34 chr6 41955490 41957026 -147322528 - MER52A LTR ERV1 -185 1570 1 691 206 14 0 chr6 41957026 41957167 -147322387 - L1MD3 LINE L1 -410 7585 7443 319 247 21 21 chr6 41957204 41957297 -147322257 - MLT1F1 LTR MaLR -442 125 33 3786 253 32 59 chr6 41957308 41958924 -147320630 - L1MC3 LINE L1 -717 7068 5497 384 247 33 13 chr6 41958925 41959075 -147320479 + MER58 DNA MER1_type 2253 2405 -15 4599 48 5 9 chr6 41959422 41959999 -147319555 + L1PA6 LINE L1 5573 6147 -7 2129 134 0 0 chr6 41960113 41960412 -147319142 + AluSx SINE Alu 1 299 -13 180 0 0 0 chr6 41960703 41960723 -147318831 + (T)n Simple_repeat Simple_repeat 1 20 0 4039 165 29 8 chr6 41960885 41961672 -147317882 + L1PB4 LINE L1 5346 6149 -7 2124 109 7 10 chr6 41961805 41962099 -147317455 - AluSq SINE Alu -20 293 1 7363 187 16 17 chr6 41962950 41965332 -147314222 - L1PA15 LINE L1 -6 6159 3777 1132 199 133 7 chr6 41965378 41965649 -147313905 + MLT1D LTR MaLR 29 333 -172 256 89 0 0 chr6 41965678 41965723 -147313831 - L1 LINE L1 -2368 3778 3734 511 245 98 53 chr6 41966035 41966259 -147313295 + L1MC4 LINE L1 6855 7094 -948 345 47 0 0 chr6 41966259 41966302 -147313252 + (CA)n Simple_repeat Simple_repeat 2 44 0 511 245 98 53 chr6 41966302 41966342 -147313212 + L1MC4 LINE L1 7094 7131 -911 1011 232 154 44 chr6 41966343 41966726 -147312828 - MLT1D LTR MaLR -2 503 79 5313 160 2 10 chr6 41966729 41967721 -147311833 + L1P LINE L1 1055 2038 -4108 6828 66 7 2 chr6 41967721 41969327 -147310227 + L1PA7 LINE L1 4533 6148 -6 1115 250 17 23 chr6 41969424 41969772 -147309782 + L1MC4 LINE L1 7128 7473 -569 3447 112 8 6 chr6 41970292 41970802 -147308752 - MER9 LTR ERVK 0 511 1 436 251 42 74 chr6 41970971 41971186 -147308368 + L1M3e LINE L1 1093 1300 -5730 660 168 18 48 chr6 41971198 41971365 -147308189 + L1MA8 LINE L1 5447 5608 -692 953 101 0 0 chr6 41971365 41971484 -147308070 + AluSx SINE Alu 1 119 -194 6921 73 3 0 chr6 41971487 41972780 -147306774 + L1PA8 LINE L1 4875 6170 -2 387 0 0 0 chr6 41972857 41972900 -147306654 + (CA)n Simple_repeat Simple_repeat 2 44 0 1405 122 0 0 chr6 41972901 41973084 -147306470 + AluSx SINE Alu 102 287 -23 207 0 0 0 chr6 41973084 41973107 -147306447 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1405 122 0 0 chr6 41973107 41973119 -147306435 + AluSx SINE Alu 286 297 -13 2913 173 30 15 chr6 41973119 41973774 -147305780 + L1MA8 LINE L1 5606 6270 -21 200 234 21 0 chr6 41975307 41975354 -147304200 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 1713 257 72 14 chr6 41976386 41977237 -147302317 + L1MC4 LINE L1 6814 7840 -86 * 25034 38 5 1 chr6 41977236 41981236 -147298318 + L1PA4 LINE L1 2131 6147 -8 343 261 120 11 chr6 41981542 41981602 -147297952 + L1MC4 LINE L1 7839 7891 -151 675 30 20 10 chr6 41981602 41981701 -147297853 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 343 261 120 11 chr6 41981701 41981824 -147297730 + L1MC4 LINE L1 7891 8042 0 26 30 0 0 chr6 41981843 41981876 -147297678 + AT_rich Low_complexity Low_complexity 1 33 0 1273 107 0 6 chr6 41982188 41982356 -147297198 - AluYb8 SINE Alu -151 167 1 243 143 0 0 chr6 41982370 41982412 -147297142 - U5 snRNA snRNA -72 44 3 2170 99 0 17 chr6 41985492 41985785 -147293769 + AluSx SINE Alu 1 288 -24 985 130 11 0 chr6 41986518 41986695 -147292859 - L1MA7 LINE L1 -4 6287 6109 723 101 63 38 chr6 41987566 41987724 -147291830 - L1MA7 LINE L1 0 6291 6130 1566 127 3 108 chr6 41987731 41988093 -147291461 - L1MA7 LINE L1 -288 6003 5680 4242 177 51 15 chr6 41988093 41988957 -147290597 - MER54A LTR ERVL 0 901 7 1569 114 14 14 chr6 41988964 41989184 -147290370 - AluSg/x SINE Alu -16 294 75 3842 181 42 18 chr6 41989184 41990326 -147289228 - L1MA7 LINE L1 -609 5682 4520 3420 190 42 18 chr6 41990323 41991262 -147288292 - L1MA7 LINE L1 -2611 3535 2575 * 2338 110 28 5 chr6 41991258 41991648 -147287906 + L1P4 LINE L1 5383 5781 -385 * 12513 164 56 55 chr6 41991677 41994232 -147285322 - MER109 Unknown Unknown -67 2365 877 2145 31 4 0 chr6 41994232 41994489 -147285065 + L1PA2 LINE L1 5897 6155 0 12513 164 56 55 chr6 41994489 41995367 -147284187 - MER109 Unknown Unknown -1555 877 1 9838 145 24 19 chr6 41995384 41997542 -147282012 + L1P3 LINE L1 11 2185 -4276 2464 142 108 14 chr6 41997542 41998128 -147281426 + MER109 Unknown Unknown 1732 2372 -60 3080 122 33 19 chr6 41998150 41998778 -147280776 - L1P4 LINE L1 -385 5781 5148 4261 206 53 14 chr6 41999882 42001093 -147278461 + L1MEc LINE L1 2294 3527 -2688 804 133 20 0 chr6 42001091 42001242 -147278312 + L1P LINE L1 3183 3336 -2810 * 2562 65 0 6 chr6 42001237 42001593 -147277961 - L1P LINE L1 -2448 3698 3345 6833 67 12 0 chr6 42001593 42002813 -147276741 + L1PA6 LINE L1 4917 6146 -8 1465 288 51 14 chr6 42003082 42003666 -147275888 - L1ME2 LINE L1 -30 6134 5529 266 175 52 21 chr6 42003783 42003880 -147275674 + (TA)n Simple_repeat Simple_repeat 1 100 0 341 191 0 0 chr6 42003969 42004032 -147275522 + L1PA15 LINE L1 2950 3012 -4553 990 209 69 28 chr6 42004073 42004437 -147275117 + L1PA15 LINE L1 3119 3497 -4068 201 229 0 0 chr6 42004437 42004485 -147275069 + G-rich Low_complexity Low_complexity 4 51 0 677 198 32 11 chr6 42004489 42004676 -147274878 + L1PA15 LINE L1 3462 3652 -3913 4899 154 36 3 chr6 42004689 42005926 -147273628 + L1PA15 LINE L1 6319 7584 0 694 160 0 8 chr6 42005926 42006048 -147273506 + L1PA15 LINE L1 6023 6146 -19 341 20 0 39 chr6 42006048 42006140 -147273414 + L1PA6 LINE L1 6106 6195 0 2370 178 32 36 chr6 42006168 42006730 -147272824 + L1MA4 LINE L1 5733 6292 -8 21 0 0 0 chr6 42006730 42006751 -147272803 + AT_rich Low_complexity Low_complexity 1 21 0 2500 255 11 54 chr6 42006925 42007671 -147271883 + L1M4 LINE L1 342 1055 -5487 5884 99 30 2 chr6 42007671 42008527 -147271027 + L1PA13 LINE L1 5284 6163 0 1405 223 40 38 chr6 42008538 42009010 -147270544 + L1M4 LINE L1 1041 1513 -5029 4037 185 25 15 chr6 42009011 42009864 -147269690 + L1MC2 LINE L1 5476 6336 -8 2500 251 21 14 chr6 42009864 42010672 -147268882 + L1M4 LINE L1 2674 3487 -3157 220 194 0 0 chr6 42010739 42010775 -147268779 + (TG)n Simple_repeat Simple_repeat 2 37 0 298 327 27 0 chr6 42010969 42011079 -147268475 - L2 LINE L2 -280 3033 2921 843 253 89 104 chr6 42011118 42011635 -147267919 - LTR33 LTR ERVL -12 509 1 912 140 7 0 chr6 42011734 42011870 -147267684 + AluSg/x SINE Alu 156 292 -20 2845 105 117 36 chr6 42013349 42013855 -147265699 - MER41B LTR ERV1 -88 547 1 4945 115 23 4 chr6 42013855 42014587 -147264967 - MER41B-int LTR ERV1 -2 5944 5199 5171 120 11 8 chr6 42014592 42015376 -147264178 + MER41-int LTR ERV1 4309 5095 -851 24 0 0 0 chr6 42015704 42015728 -147263826 + AT_rich Low_complexity Low_complexity 1 24 0 6772 138 47 9 chr6 42015950 42017136 -147262418 + Tigger3b DNA MER2_type 1 1231 0 282 386 9 0 chr6 42018614 42018728 -147260826 + MER5A DNA MER1_type 72 186 -3 192 343 40 10 chr6 42018748 42018847 -147260707 - MIR SINE MIR -73 189 88 33 0 0 0 chr6 42020523 42020556 -147258998 + AT_rich Low_complexity Low_complexity 1 33 0 2630 58 0 0 chr6 42022132 42022459 -147257095 + L1PA6 LINE L1 5820 6146 -8 358 331 127 0 chr6 42022670 42022851 -147256703 - MIR SINE MIR -6 256 53 2006 154 0 3 chr6 42023519 42023824 -147255730 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr6 42024907 42024928 -147254626 + AT_rich Low_complexity Low_complexity 1 21 0 1827 154 36 11 chr6 42025344 42025702 -147253852 - L1MA6 LINE L1 0 6300 5934 428 315 127 17 chr6 42026101 42026409 -147253145 - L1PA13 LINE L1 -6446 392 12 4502 235 102 91 chr6 42026446 42026820 -147252734 - L1MC3 LINE L1 -17 7768 7400 8883 177 23 28 chr6 42026820 42028584 -147250970 - MER52A LTR ERV1 0 1755 1 4502 235 102 91 chr6 42028584 42028762 -147250792 - L1MC3 LINE L1 -385 7400 7225 300 280 21 21 chr6 42028762 42028855 -147250699 - MLT1F1 LTR MaLR -442 125 33 4502 235 102 91 chr6 42028855 42030485 -147249069 - L1MC3 LINE L1 -560 7225 5468 361 270 18 0 chr6 42030496 42030607 -147248947 + MER58 DNA MER1_type 2293 2405 -15 2127 128 3 0 chr6 42031061 42031359 -147248195 + AluSx SINE Alu 1 299 -13 261 0 0 0 chr6 42031814 42031843 -147247711 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2212 89 0 0 chr6 42031846 42032126 -147247428 - AluY SINE Alu -31 280 1 4035 160 53 17 chr6 42032153 42032929 -147246625 + L1PB4 LINE L1 5346 6149 -7 2090 99 7 14 chr6 42033065 42033359 -147246195 - AluSq SINE Alu -16 297 6 7643 190 16 8 chr6 42034215 42036584 -147242970 - L1PA15 LINE L1 -6 6159 3777 840 210 10 29 chr6 42036630 42036900 -147242654 + MLT1D LTR MaLR 29 333 -172 261 89 0 0 chr6 42036929 42036974 -147242580 - L1 LINE L1 -2368 3778 3734 494 259 84 27 chr6 42037286 42037338 -147242216 + L1MC4 LINE L1 6855 6903 -1139 1836 70 62 4 chr6 42037338 42037579 -147241975 - AluY SINE Alu -13 298 44 494 259 84 27 chr6 42037579 42037748 -147241806 + L1MC4 LINE L1 6903 7096 -946 192 77 0 0 chr6 42037748 42037774 -147241780 + (CA)n Simple_repeat Simple_repeat 1 26 0 494 259 84 27 chr6 42037774 42037813 -147241741 + L1MC4 LINE L1 7096 7131 -911 1612 231 154 16 chr6 42037814 42038256 -147241298 - MLT1D LTR MaLR -2 503 1 345 176 0 0 chr6 42038258 42038326 -147241228 + L1MC4 LINE L1 7128 7195 -847 320 291 25 0 chr6 42038777 42038856 -147240698 + MIR SINE MIR 6 86 -176 364 329 94 68 chr6 42038943 42038977 -147240577 + MLT1K LTR MaLR 104 136 -452 1172 274 59 16 chr6 42038977 42039400 -147240154 + LTR47B LTR ERVL 1 441 -2 364 329 94 68 chr6 42039400 42039791 -147239763 + MLT1K LTR MaLR 136 540 -48 461 203 47 8 chr6 42039804 42039932 -147239622 + L1MC4 LINE L1 7538 7670 -372 330 228 13 87 chr6 42039984 42040133 -147239421 + L1MC4 LINE L1 7884 8021 -21 230 176 0 0 chr6 42041149 42041183 -147238371 + L1M3e LINE L1 4 37 -6993 * 504 203 322 37 chr6 42041168 42041410 -147238144 + L1M3e LINE L1 991 1301 -5729 * 841 165 0 45 chr6 42041407 42041583 -147237971 + L1MA9 LINE L1 5440 5607 -684 1942 143 3 0 chr6 42041585 42041871 -147237683 + AluSx SINE Alu 2 288 -24 6705 13 0 0 chr6 42041891 42042717 -147236837 + L1PA2 LINE L1 5388 6213 0 2908 164 57 26 chr6 42042717 42043400 -147236154 + L1MA9 LINE L1 5604 6307 -5 22 0 0 0 chr6 42043760 42043782 -147235772 + AT_rich Low_complexity Low_complexity 1 22 0 2404 246 119 40 chr6 42046008 42046944 -147232610 + L1MC4 LINE L1 6899 7929 -113 560 40 13 0 chr6 42046944 42047019 -147232535 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 2404 246 119 40 chr6 42047019 42047143 -147232411 + L1MC4 LINE L1 7929 8042 0 32 26 0 0 chr6 42047148 42047187 -147232367 + AT_rich Low_complexity Low_complexity 1 39 0 701 74 0 1 chr6 42049094 42049194 -147230360 + L1MA3 LINE L1 6137 6249 -56 837 160 0 0 chr6 42049201 42049332 -147230222 + FLAM_C SINE Alu 1 131 -12 390 85 0 0 chr6 42049347 42049406 -147230148 + L1MA1 LINE L1 6244 6302 0 26 30 0 0 chr6 42050922 42050955 -147228599 + AT_rich Low_complexity Low_complexity 1 33 0 32 43 0 0 chr6 42051134 42051180 -147228374 + AT_rich Low_complexity Low_complexity 1 46 0 2614 84 13 5 chr6 42051707 42052088 -147227466 + L1PA6 LINE L1 5771 6154 0 836 250 23 11 chr6 42052120 42052384 -147227170 + L1ME1 LINE L1 4378 4644 -1502 2477 238 56 27 chr6 42052426 42053289 -147226265 + L1ME1 LINE L1 5225 6112 -54 406 292 17 8 chr6 42053312 42053432 -147226122 + MIR SINE MIR 47 167 -95 298 189 0 40 chr6 42053641 42053715 -147225839 + L1ME2 LINE L1 6093 6163 -1 3222 139 65 58 chr6 42053837 42054004 -147225550 + L1MA9 LINE L1 5616 5780 -532 213 39 0 0 chr6 42054004 42054030 -147225524 + (CA)n Simple_repeat Simple_repeat 1 26 0 3222 139 65 58 chr6 42054030 42054194 -147225360 + L1MA9 LINE L1 5780 5941 -371 2042 118 3 0 chr6 42054194 42054481 -147225073 + AluSx SINE Alu 10 297 -15 3222 139 65 58 chr6 42054481 42054840 -147224714 + L1MA9 LINE L1 5941 6312 0 247 159 0 0 chr6 42055059 42055103 -147224451 - U5 snRNA snRNA -72 44 1 31 58 0 0 chr6 42057197 42057249 -147222305 + AT_rich Low_complexity Low_complexity 1 52 0 961 167 11 0 chr6 42058720 42058900 -147220654 - L1MA7 LINE L1 -5 6286 6105 1679 150 11 83 chr6 42059740 42060114 -147219440 - L1MA7 LINE L1 -265 6026 5680 4537 178 53 13 chr6 42060114 42060983 -147218571 - MER54A LTR ERVL 0 901 7 4085 185 31 17 chr6 42060985 42062124 -147217430 - L1MA7 LINE L1 -612 5679 4521 5234 206 48 6 chr6 42062129 42063411 -147216143 - L1MA7 LINE L1 -2610 3536 2202 229 26 53 0 chr6 42063927 42063965 -147215589 + (TA)n Simple_repeat Simple_repeat 2 41 0 525 91 13 13 chr6 42063984 42064061 -147215493 + MSTB1 LTR MaLR 348 424 -8 963 248 66 23 chr6 42064306 42064608 -147214946 + L2 LINE L2 2997 3311 -2 3009 48 13 0 chr6 42064808 42065182 -147214372 + L1PA8 LINE L1 5786 6164 -8 26 50 0 0 chr6 42065182 42065222 -147214332 + AT_rich Low_complexity Low_complexity 1 40 0 4985 78 19 0 chr6 42065494 42066165 -147213389 + L1PA8 LINE L1 5476 6159 -13 1847 92 64 21 chr6 42066560 42066843 -147212711 - AluSq SINE Alu -18 295 1 298 291 183 56 chr6 42068547 42068760 -147210794 - MIR SINE MIR -11 251 12 376 298 23 69 chr6 42068773 42068991 -147210563 - L1MC/D LINE L1 -2337 5471 5264 714 154 0 0 chr6 42069089 42069212 -147210342 - L1MA8 LINE L1 -11 6280 6158 2150 112 3 10 chr6 42071693 42072007 -147207547 + AluSx SINE Alu 1 312 0 2102 133 0 3 chr6 42072405 42072707 -147206847 - AluSq SINE Alu -12 301 1 24 0 0 0 chr6 42073252 42073276 -147206278 + AT_rich Low_complexity Low_complexity 1 24 0 349 82 36 36 chr6 42073306 42073416 -147206138 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 261 283 96 86 chr6 42073790 42073868 -147205686 - L1ME LINE L1 -237 5884 5808 2619 43 0 0 chr6 42073868 42074173 -147205381 + AluY SINE Alu 1 305 -6 261 283 96 86 chr6 42074173 42074593 -147204961 - L1ME LINE L1 -313 5808 5381 638 304 55 13 chr6 42074603 42074840 -147204714 + MLT1I LTR MaLR 10 256 -153 2489 229 11 25 chr6 42074937 42075509 -147204045 + L1PA13 LINE L1 1 564 -6223 2233 152 22 12 chr6 42075509 42075910 -147203644 + L1PA15 LINE L1 5757 6161 -4 1462 191 37 13 chr6 42075932 42076297 -147203257 + AluJb SINE Alu 2 373 0 613 192 17 23 chr6 42076298 42076475 -147203079 + GA-rich Low_complexity Low_complexity 3 178 0 573 319 60 4 chr6 42076686 42076921 -147202633 + MLT1I LTR MaLR 138 385 -24 26 0 0 0 chr6 42076933 42076959 -147202595 + AT_rich Low_complexity Low_complexity 1 26 0 278 248 56 48 chr6 42077033 42077158 -147202396 + L1ME4a LINE L1 5946 6071 -50 25 83 0 0 chr6 42077303 42077363 -147202191 + AT_rich Low_complexity Low_complexity 1 60 0 27 0 0 0 chr6 42077430 42077457 -147202097 + AT_rich Low_complexity Low_complexity 1 27 0 589 310 137 35 chr6 42077694 42078036 -147201518 - L2 LINE L2 -16 3297 2921 456 273 80 17 chr6 42078132 42078444 -147201110 - L1MC4 LINE L1 -32 8010 7691 727 254 235 16 chr6 42078455 42078778 -147200776 - L1MC4 LINE L1 -612 7430 7037 2095 77 17 0 chr6 42078792 42079079 -147200475 - L1PA7 LINE L1 -3 6151 5860 22 0 0 0 chr6 42079204 42079226 -147200328 + AT_rich Low_complexity Low_complexity 1 22 0 400 95 16 0 chr6 42079339 42079402 -147200152 + L1MA9 LINE L1 6227 6290 -22 2110 101 41 9 chr6 42080210 42080548 -147199006 + L1PA10 LINE L1 5820 6168 0 333 137 0 0 chr6 42083782 42083833 -147195721 + MER66A LTR ERV1 287 337 -141 304 274 24 0 chr6 42084375 42084459 -147195095 + MER112 DNA MER1_type 1 86 -174 215 273 61 40 chr6 42087286 42087385 -147192169 + L2 LINE L2 3213 3313 0 6239 132 10 18 chr6 42087515 42087877 -147191677 - L1PB1 LINE L1 -1 6150 5787 216 0 0 0 chr6 42087877 42087901 -147191653 + (TA)n Simple_repeat Simple_repeat 1 24 0 6239 132 10 18 chr6 42087901 42088700 -147190854 - L1PB1 LINE L1 -364 5787 5006 2323 91 0 0 chr6 42088700 42088997 -147190557 - AluY SINE Alu -14 297 1 6239 132 10 18 chr6 42088997 42089388 -147190166 - L1PB1 LINE L1 -1145 5006 4613 625 253 0 18 chr6 42089393 42089559 -147189995 - L1MC/D LINE L1 -2415 5627 5465 36 62 0 0 chr6 42089596 42089660 -147189894 + AT_rich Low_complexity Low_complexity 1 64 0 351 265 31 0 chr6 42089660 42089758 -147189796 + MER58 DNA MER1_type 2320 2420 0 10924 30 0 15 chr6 42089915 42091326 -147188228 + L1PA4 LINE L1 4077 5469 -686 2471 7 80 0 chr6 42091326 42091614 -147187940 + AluY SINE Alu 1 311 0 10924 30 0 15 chr6 42091614 42092291 -147187263 + L1PA4 LINE L1 5469 6155 0 686 196 88 14 chr6 42092614 42092762 -147186792 + MLT1A1 LTR MaLR 156 314 -51 21 0 0 0 chr6 42092939 42092960 -147186594 + AT_rich Low_complexity Low_complexity 1 21 0 1509 184 23 30 chr6 42094389 42094688 -147184866 + AluJo SINE Alu 3 299 -13 1408 170 66 111 chr6 42094720 42095162 -147184392 + L1MA8 LINE L1 3913 4334 -1812 22302 93 21 14 chr6 42095167 42099250 -147180304 + L1PA8 LINE L1 2040 6151 -21 5199 153 60 21 chr6 42099276 42101166 -147178388 + L1MA8 LINE L1 4336 6288 -3 675 12 0 0 chr6 42101173 42101255 -147178299 - L1PA2 LINE L1 0 6155 6074 2727 208 26 12 chr6 42101255 42101900 -147177654 + L1MA9 LINE L1 4317 4970 -1176 2442 164 23 18 chr6 42101900 42102911 -147176643 + L1MA9 LINE L1 5230 6306 -6 6091 208 29 9 chr6 42102992 42104761 -147174793 - L1PA16 LINE L1 -3 6163 4363 369 0 0 0 chr6 42104761 42104802 -147174752 + (TG)n Simple_repeat Simple_repeat 2 42 0 6091 208 29 9 chr6 42104802 42105291 -147174263 - L1PA16 LINE L1 -1803 4363 3885 767 206 36 36 chr6 42105492 42105657 -147173897 + FRAM SINE Alu 11 175 -1 187 274 20 0 chr6 42105877 42105928 -147173626 - L2 LINE L2 -10 3262 3211 242 212 30 30 chr6 42106190 42106256 -147173298 + L2 LINE L2 3179 3244 -69 575 314 137 54 chr6 42106342 42106780 -147172774 - L2 LINE L2 -106 3207 2807 2181 76 0 50 chr6 42106780 42107097 -147172457 - AluSx SINE Alu -11 301 1 575 314 137 54 chr6 42107097 42107593 -147171961 - L2 LINE L2 -506 2807 2155 230 141 14 42 chr6 42108338 42108409 -147171145 + (TA)n Simple_repeat Simple_repeat 1 69 0 804 257 51 24 chr6 42108526 42108779 -147170775 - MIR SINE MIR -2 260 1 1170 146 0 6 chr6 42110890 42111068 -147168486 - AluJo SINE Alu -16 296 120 1110 182 8 68 chr6 42111089 42111353 -147168201 - L1MA10 LINE L1 -2 6332 6085 361 369 127 15 chr6 42111353 42111692 -147167862 - L2 LINE L2 -557 2757 2381 2357 129 91 12 chr6 42111716 42112136 -147167418 - L1MA7 LINE L1 -1 6290 5838 271 214 0 29 chr6 42112542 42112645 -147166909 + CT-rich Low_complexity Low_complexity 3 102 0 688 296 68 26 chr6 42114745 42115056 -147164498 - Charlie2 DNA MER1_type -2458 324 1 2373 82 0 0 chr6 42116548 42116840 -147162714 - AluSx SINE Alu -20 292 1 2220 73 10 30 chr6 42118332 42118635 -147160919 + AluY SINE Alu 1 297 -14 6309 119 13 1 chr6 42119639 42120634 -147158920 + L1PA15 LINE L1 5158 6163 -2 23 33 0 0 chr6 42120806 42120836 -147158718 + AT_rich Low_complexity Low_complexity 1 30 0 1727 169 3 10 chr6 42121014 42121310 -147158244 + AluJb SINE Alu 1 294 -18 24 32 0 0 chr6 42121508 42121539 -147158015 + AT_rich Low_complexity Low_complexity 1 31 0 2521 158 69 7 chr6 42121549 42122102 -147157452 - MER109 Unknown Unknown -156 2276 1603 263 217 76 54 chr6 42122076 42122168 -147157386 - MER109 Unknown Unknown -1470 962 869 * 6837 151 33 32 chr6 42122245 42123538 -147156016 + L1MA8 LINE L1 3990 5309 -982 2118 148 0 0 chr6 42123538 42123848 -147155706 + AluSx SINE Alu 1 310 -2 6837 151 33 32 chr6 42123848 42124544 -147155010 + L1MA8 LINE L1 5309 6003 -288 29 70 0 0 chr6 42124802 42124859 -147154695 + AT_rich Low_complexity Low_complexity 1 57 0 2359 91 10 3 chr6 42124886 42125194 -147154360 - AluSp SINE Alu -3 310 1 610 304 44 35 chr6 42126015 42126242 -147153312 - MIR SINE MIR -15 247 19 1803 123 8 4 chr6 42126242 42126503 -147153051 - AluSg1 SINE Alu -47 262 1 250 295 16 0 chr6 42126585 42126646 -147152908 + L2 LINE L2 3189 3250 -22 408 333 12 19 chr6 42126818 42126980 -147152574 - MIR3 SINE MIR -6 202 42 2096 128 14 0 chr6 42128292 42128588 -147150966 + AluSp SINE Alu 1 300 -13 183 206 0 0 chr6 42129897 42129931 -147149623 - MIR SINE MIR -84 124 91 2230 88 10 3 chr6 42131490 42131795 -147147759 + AluSc SINE Alu 1 307 -2 337 210 50 20 chr6 42132004 42132104 -147147450 + MIR SINE MIR 57 159 -103 457 88 15 0 chr6 42132457 42132525 -147147029 - MER41A LTR ERV1 -87 467 399 351 250 167 0 chr6 42132532 42132616 -147146938 + MER115 DNA AcHobo 50 147 -546 2082 144 0 0 chr6 42133006 42133312 -147146242 + AluSx SINE Alu 1 306 -6 729 172 0 47 chr6 42133474 42133602 -147145952 - FLAM_C SINE Alu -11 122 1 2302 67 0 0 chr6 42134004 42134286 -147145268 + AluSg SINE Alu 6 287 -23 2516 44 0 10 chr6 42134305 42134602 -147144952 - AluY SINE Alu -17 294 1 2117 110 13 3 chr6 42134620 42134919 -147144635 + AluSx SINE Alu 1 302 -10 309 201 82 90 chr6 42134964 42135055 -147144499 + L2 LINE L2 1879 1970 -1344 2326 154 77 33 chr6 42135055 42135484 -147144070 + MER83 LTR ERV1 1 448 0 309 201 82 90 chr6 42135484 42135526 -147144028 + L2 LINE L2 1970 2011 -1303 1890 136 36 7 chr6 42135759 42136060 -147143494 + AluJb SINE Alu 3 312 0 438 277 138 64 chr6 42136103 42136558 -147142996 + L1MC4a LINE L1 4903 5391 -755 548 309 93 50 chr6 42136561 42136698 -147142856 + L1MC4a LINE L1 5438 5568 -2240 2270 106 3 6 chr6 42136698 42137009 -147142545 + AluSp SINE Alu 1 310 -3 548 309 93 50 chr6 42137009 42137247 -147142307 + L1MC4a LINE L1 5568 5829 -1979 692 122 0 9 chr6 42137249 42137364 -147142190 + (GAA)n Simple_repeat Simple_repeat 1 114 0 662 286 98 19 chr6 42137403 42137669 -147141885 - L2 LINE L2 0 3313 3027 3513 164 64 22 chr6 42137711 42137978 -147141576 + L1MD2 LINE L1 5639 5893 -466 1751 166 3 24 chr6 42137978 42138312 -147141242 - AluSx SINE Alu 0 328 1 3513 164 64 22 chr6 42138312 42138665 -147140889 + L1MD2 LINE L1 5893 6294 -65 2069 152 0 0 chr6 42138665 42138975 -147140579 - AluSx SINE Alu -2 310 1 3513 164 64 22 chr6 42138975 42139043 -147140511 + L1MD2 LINE L1 6294 6358 -1 279 238 29 48 chr6 42139140 42139245 -147140309 - MLT1L LTR MaLR -379 236 134 259 268 0 0 chr6 42139457 42139513 -147140041 - L2 LINE L2 -73 3199 3144 1146 138 0 6 chr6 42139606 42139766 -147139788 + FRAM SINE Alu 1 158 -18 2282 113 3 0 chr6 42139766 42140066 -147139488 + AluSp SINE Alu 1 301 -12 341 278 24 39 chr6 42140088 42140237 -147139317 + MLT1H1 LTR MaLR 71 242 -307 1435 157 69 91 chr6 42140257 42140576 -147138978 - MLT1B LTR MaLR -2 388 77 2034 130 7 0 chr6 42140576 42140861 -147138693 + AluSx SINE Alu 8 294 -18 1435 157 69 91 chr6 42140861 42140916 -147138638 - MLT1B LTR MaLR -313 77 22 349 236 150 29 chr6 42141011 42141151 -147138403 + MLT1H1 LTR MaLR 298 454 -101 211 233 0 0 chr6 42141320 42141363 -147138191 + L3 LINE CR1 1179 1221 -356 1010 137 31 97 chr6 42141533 42141575 -147137979 - MSTA LTR MaLR 0 428 385 2060 125 0 14 chr6 42141575 42141889 -147137665 + AluSx SINE Alu 1 312 0 1010 137 31 97 chr6 42141889 42142003 -147137551 - MSTA LTR MaLR -43 385 289 2128 117 7 3 chr6 42142003 42142310 -147137244 - AluSq SINE Alu -5 308 1 1010 137 31 97 chr6 42142310 42142379 -147137175 - MSTA LTR MaLR -139 289 217 451 132 0 121 chr6 42142384 42142475 -147137079 - MSTA LTR MaLR -348 80 1 809 233 65 49 chr6 42142544 42142789 -147136765 - L1ME3 LINE L1 -4 6158 5910 1335 204 82 29 chr6 42142802 42143145 -147136409 - L1ME3 LINE L1 -418 5744 5384 1393 142 26 71 chr6 42143156 42143423 -147136131 - AluJb SINE Alu -57 255 1 762 243 39 24 chr6 42143423 42143599 -147135955 - L1ME3 LINE L1 -760 5386 5203 2352 88 13 10 chr6 42143599 42143907 -147135647 - AluSc SINE Alu 0 309 1 762 243 39 24 chr6 42143907 42143985 -147135569 - L1ME3 LINE L1 -943 5203 5128 935 155 0 19 chr6 42144015 42144176 -147135378 - FAM SINE Alu -15 170 13 424 299 103 0 chr6 42144179 42144393 -147135161 - L1ME3 LINE L1 -1011 5135 4900 1824 112 93 11 chr6 42144511 42144643 -147134911 - AluSx SINE Alu -21 291 171 2034 109 0 30 chr6 42144643 42144945 -147134609 - AluSc SINE Alu -16 293 1 1824 112 93 11 chr6 42144945 42145081 -147134473 - AluSx SINE Alu -141 171 1 1882 107 44 4 chr6 42145481 42145753 -147133801 - AluSq SINE Alu -30 283 1 769 240 83 47 chr6 42145781 42146760 -147132794 - HAL1 LINE L1 -342 2165 1061 2176 102 24 0 chr6 42146760 42147055 -147132499 + AluSp SINE Alu 1 302 -11 769 240 83 47 chr6 42147055 42147365 -147132189 - HAL1 LINE L1 -1446 1061 764 576 9 9 217 chr6 42148246 42148352 -147131202 + tRNA-Leu-TTG tRNA tRNA 1 84 -2 708 0 0 0 chr6 42148794 42148866 -147130688 - tRNA-Gln-CAG tRNA tRNA -3 72 1 357 93 0 0 chr6 42149418 42149472 -147130082 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 759 0 0 0 chr6 42150815 42150897 -147128657 - tRNA-Leu-CTT tRNA tRNA -3 82 1 548 83 0 0 chr6 42151769 42151841 -147127713 + tRNA-Met-e tRNA tRNA 1 72 -3 661 241 95 60 chr6 42152619 42153055 -147126499 + LTR50 LTR ERVL 10 655 -130 2286 100 0 0 chr6 42153083 42153374 -147126180 - AluSx SINE Alu -21 291 1 1286 270 32 38 chr6 42153409 42153874 -147125680 - L2 LINE L2 -57 3256 2791 241 317 32 73 chr6 42153947 42154000 -147125554 - MER5A DNA MER1_type -67 122 68 2214 102 7 0 chr6 42154000 42154295 -147125259 - AluSp SINE Alu -16 297 1 241 317 32 73 chr6 42154295 42154364 -147125190 - MER5A DNA MER1_type -121 68 5 1974 154 3 3 chr6 42154596 42154908 -147124646 - AluSx SINE Alu 0 312 1 282 276 92 41 chr6 42155037 42155233 -147124321 + L2 LINE L2 2553 2758 -556 242 319 14 0 chr6 42155445 42155517 -147124037 + L2 LINE L2 2995 3067 -205 4661 145 44 60 chr6 42156110 42157552 -147122002 - pTR5 LTR ERV1 0 2438 75 2073 77 21 3 chr6 42157622 42157907 -147121647 - AluSc SINE Alu -16 293 4 680 0 0 0 chr6 42158222 42158295 -147121259 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2144 54 54 7 chr6 42158785 42159080 -147120474 + AluY SINE Alu 1 309 -2 1880 93 7 0 chr6 42159092 42159362 -147120192 + AluSx SINE Alu 5 276 -36 24 53 0 0 chr6 42159362 42159400 -147120154 + AT_rich Low_complexity Low_complexity 1 38 0 340 273 120 69 chr6 42159884 42160100 -147119454 - L2 LINE L2 -4 3309 3083 524 83 0 0 chr6 42160458 42160530 -147119024 - tRNA-Met-e tRNA tRNA -3 72 1 22 35 0 0 chr6 42160606 42160635 -147118919 + AT_rich Low_complexity Low_complexity 1 29 0 271 231 0 15 chr6 42161308 42161373 -147118181 - MER81 DNA DNA -15 99 36 2187 86 0 3 chr6 42161715 42162016 -147117538 - AluSq SINE Alu -13 300 1 2146 92 0 3 chr6 42162909 42163215 -147116339 + AluSq SINE Alu 1 305 0 999 181 93 1 chr6 42163559 42163980 -147115574 - LTR54B LTR ERV1 -2 496 8 519 129 0 21 chr6 42164152 42164245 -147115309 - AluSg/x SINE Alu -3 306 216 7245 138 108 109 chr6 42164854 42166555 -147112999 + pTR5 LTR ERV1 741 2438 0 2292 60 0 13 chr6 42167165 42167499 -147112055 - AluY SINE Alu 0 311 1 329 230 23 11 chr6 42167500 42167587 -147111967 - L2 LINE L2 -1306 2008 1921 11892 166 119 8 chr6 42167605 42169239 -147110315 + L1PB1 LINE L1 6 1990 -4873 1969 135 24 0 chr6 42169239 42169527 -147110027 + AluSx SINE Alu 1 295 -17 11892 166 119 8 chr6 42169527 42170276 -147109278 + L1PB1 LINE L1 1990 2654 -4209 2379 57 0 3 chr6 42170276 42170576 -147108978 + AluY SINE Alu 1 299 -12 14437 176 12 14 chr6 42170578 42171808 -147107746 + L1PB1 LINE L1 2998 4230 -2637 2088 127 3 3 chr6 42171808 42172116 -147107438 + AluSq SINE Alu 1 308 -5 1772 131 30 7 chr6 42172122 42172419 -147107135 + AluSx SINE Alu 1 304 -8 14437 176 12 14 chr6 42172419 42174785 -147104769 + L1PB1 LINE L1 4235 6593 -274 2013 127 7 0 chr6 42174785 42175093 -147104461 - AluSx SINE Alu -2 310 1 14437 176 12 14 chr6 42175093 42175360 -147104194 + L1PB1 LINE L1 6593 6859 -8 386 228 83 21 chr6 42175373 42175518 -147104036 - L2 LINE L2 -1355 1959 1806 2196 180 49 112 chr6 42175559 42176231 -147103323 + LTR8A LTR ERV1 30 659 -68 219 36 0 0 chr6 42176232 42176260 -147103294 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 283 132 44 187 chr6 42177661 42177752 -147101802 + LTR8A LTR ERV1 650 727 0 350 289 209 21 chr6 42177764 42177999 -147101555 - L2 LINE L2 -2236 1078 800 373 282 28 7 chr6 42178001 42178143 -147101411 - MER112 DNA MER1_type -8 252 108 1046 195 0 10 chr6 42178559 42178764 -147100790 + AluSq SINE Alu 1 203 -110 610 88 33 103 chr6 42178764 42178938 -147100616 + AluSg/x SINE Alu 67 294 -16 330 209 57 2 chr6 42178938 42179015 -147100539 - L1MC4 LINE L1 -1340 6982 1977 2354 43 0 0 chr6 42179234 42179544 -147100010 - AluY SINE Alu 0 310 1 2474 43 0 7 chr6 42179766 42180065 -147099489 - AluY SINE Alu -14 297 1 2372 64 0 6 chr6 42180098 42180410 -147099144 - AluY SINE Alu -1 310 1 1953 93 3 21 chr6 42180440 42180765 -147098789 - AluY SINE Alu 0 320 1 253 329 0 0 chr6 42180896 42180978 -147098576 + L2 LINE L2 2601 2682 -632 1870 122 51 0 chr6 42181164 42181460 -147098094 - AluSx SINE Alu -1 311 1 1610 224 193 24 chr6 42181694 42182229 -147097325 + MLT1E2 LTR MaLR 2 626 0 792 241 107 88 chr6 42182229 42182711 -147096843 - MLT1F LTR MaLR -49 506 1 1883 120 0 30 chr6 42182751 42183051 -147096503 - AluSx SINE Alu -13 299 9 2162 78 0 14 chr6 42183373 42183706 -147095848 - AluY SINE Alu 0 311 1 779 99 21 14 chr6 42184009 42184151 -147095403 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 407 287 140 25 chr6 42184236 42184393 -147095161 + MER5A DNA MER1_type 14 188 -1 848 224 20 17 chr6 42184666 42184965 -147094589 + 7SLRNA srpRNA srpRNA 1 300 -20 2905 140 12 17 chr6 42185246 42185725 -147093829 + MER31A LTR ERV1 1 477 -8 4921 163 48 8 chr6 42185850 42186735 -147092819 + L1MD1 LINE L1 5323 6242 0 1784 213 54 82 chr6 42186820 42187450 -147092104 + LTR9 LTR ERV1 1 612 0 567 229 37 60 chr6 42188341 42188559 -147090995 + LTR7 LTR ERV1 238 450 0 683 0 0 0 chr6 42188863 42188936 -147090618 - tRNA-Phe-TTC tRNA tRNA -3 73 1 634 0 0 0 chr6 42189390 42189462 -147090092 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 203 225 12 75 chr6 42189651 42189731 -147089823 - MIR SINE MIR -2 260 186 2164 104 0 0 chr6 42190465 42190764 -147088790 - AluSx SINE Alu -13 299 1 228 111 0 0 chr6 42191239 42191275 -147088279 + (TTTTC)n Simple_repeat Simple_repeat 1 36 0 216 0 0 0 chr6 42191523 42191547 -147088007 + (A)n Simple_repeat Simple_repeat 1 24 0 279 281 35 53 chr6 42191656 42191770 -147087784 + MIR SINE MIR 103 214 -48 2393 58 3 0 chr6 42191863 42192173 -147087381 - AluY SINE Alu 0 311 1 426 145 0 24 chr6 42192904 42192987 -147086567 + AluJo SINE Alu 45 125 -187 198 167 0 0 chr6 42193009 42193045 -147086509 + GA-rich Low_complexity Low_complexity 2 37 0 628 158 194 0 chr6 42193045 42193184 -147086370 + AluJo SINE Alu 120 285 -27 263 208 0 19 chr6 42193734 42193787 -147085767 + L2 LINE L2 3262 3313 0 2206 68 0 24 chr6 42194249 42194542 -147085012 + AluSg SINE Alu 1 286 -24 788 193 56 75 chr6 42194689 42194902 -147084652 + MLT1D LTR MaLR 296 504 -1 407 0 0 0 chr6 42194958 42195005 -147084549 + AluY SINE Alu 1 47 -265 330 0 0 0 chr6 42195005 42195041 -147084513 + AluY SINE Alu 9 44 -257 1973 74 53 3 chr6 42195041 42195325 -147084229 + AluSp SINE Alu 6 303 -10 727 12 0 0 chr6 42196192 42196274 -147083280 + tRNA-Leu-CTT tRNA tRNA 1 82 -3 1833 80 0 4 chr6 42196509 42196760 -147082794 - AluSx SINE Alu -62 250 1 198 339 0 0 chr6 42197030 42197089 -147082465 + L2 LINE L2 3000 3058 -214 226 226 48 0 chr6 42197133 42197195 -147082359 - L2 LINE L2 -63 3209 3145 1151 122 0 6 chr6 42197372 42197544 -147082010 - AluSx SINE Alu -141 171 1 569 261 122 84 chr6 42197544 42197961 -147081593 - L1M4 LINE L1 -2292 3854 3422 359 185 25 25 chr6 42197976 42198057 -147081497 + L1MC5 LINE L1 6776 6856 -1105 1481 209 41 102 chr6 42198076 42198358 -147081196 + L1MC5 LINE L1 7275 7573 -388 1791 139 68 0 chr6 42198358 42198639 -147080915 - AluJb SINE Alu -12 300 1 1481 209 41 102 chr6 42198639 42198769 -147080785 + L1MC5 LINE L1 7573 7709 -252 666 233 8 0 chr6 42198769 42198898 -147080656 - FLAM_A SINE Alu 0 133 4 1481 209 41 102 chr6 42198898 42198934 -147080620 + L1MC5 LINE L1 7709 7746 -215 2314 84 0 3 chr6 42198934 42199245 -147080309 - AluSx SINE Alu -2 310 1 1481 209 41 102 chr6 42199245 42199479 -147080075 + L1MC5 LINE L1 7746 7917 -44 2292 94 3 0 chr6 42199483 42199791 -147079763 - AluSp SINE Alu -4 309 1 1483 278 203 11 chr6 42199802 42200281 -147079273 - HAL1 LINE L1 -1679 828 442 1584 146 93 7 chr6 42200281 42200561 -147078993 - AluSx SINE Alu -8 304 1 1483 278 203 11 chr6 42200561 42200775 -147078779 - HAL1 LINE L1 -2065 442 2 219 297 188 29 chr6 42201130 42201268 -147078286 - L3 LINE CR1 -230 1347 1188 1786 103 114 0 chr6 42201338 42201610 -147077944 - AluSg1 SINE Alu -6 303 1 622 213 194 0 chr6 42201842 42202002 -147077552 + MIR SINE MIR 72 262 0 242 315 111 17 chr6 42201991 42202172 -147077382 - L2 LINE L2 -1084 2230 2033 * 204 301 48 58 chr6 42203978 42204081 -147075473 + L2 LINE L2 2376 2477 -837 285 265 135 60 chr6 42204468 42204653 -147074901 + MLT1K LTR MaLR 379 577 -11 295 365 0 0 chr6 42204748 42204863 -147074691 + L2 LINE L2 2644 2758 -556 528 203 34 74 chr6 42204883 42205031 -147074523 + MIR SINE MIR 3 144 -118 183 239 0 22 chr6 42205251 42205297 -147074257 + L2 LINE L2 2926 2970 -343 1898 122 0 72 chr6 42205361 42205682 -147073872 - AluSx SINE Alu -14 298 1 208 143 0 0 chr6 42206276 42206311 -147073243 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 23 33 0 0 chr6 42206610 42206640 -147072914 + AT_rich Low_complexity Low_complexity 1 30 0 210 250 0 0 chr6 42207649 42207689 -147071865 + (TG)n Simple_repeat Simple_repeat 2 41 0 2389 80 0 10 chr6 42207965 42208266 -147071288 - AluY SINE Alu -13 298 1 401 234 21 102 chr6 42208830 42209065 -147070489 - L1MC4 LINE L1 -1 8041 7826 380 214 0 0 chr6 42209103 42209187 -147070367 - L1ME2 LINE L1 -12 6152 6069 25 75 0 0 chr6 42209529 42209582 -147069972 + AT_rich Low_complexity Low_complexity 1 53 0 2293 120 0 0 chr6 42209811 42210111 -147069443 - AluSx SINE Alu -12 300 1 410 185 100 77 chr6 42211499 42211629 -147067925 + L2 LINE L2 2532 2664 -650 842 48 0 0 chr6 42211630 42211734 -147067820 - AluY SINE Alu 0 311 208 652 243 69 6 chr6 42211735 42211908 -147067646 + L2 LINE L2 2671 2854 -460 1004 266 109 70 chr6 42211908 42212436 -147067118 + L2 LINE L2 2766 3313 0 778 241 96 62 chr6 42213097 42213774 -147065780 - L1MC5 LINE L1 -36 7925 7226 513 191 38 91 chr6 42213865 42214075 -147065479 - L1MC5 LINE L1 -770 7191 6993 1286 226 119 55 chr6 42214104 42214235 -147065319 + MLT1F LTR MaLR 1 122 -420 243 0 0 0 chr6 42214235 42214262 -147065292 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1995 143 7 0 chr6 42214264 42214550 -147065004 - AluSx SINE Alu -24 288 1 1286 226 119 55 chr6 42214550 42214852 -147064702 + MLT1F LTR MaLR 122 465 -77 813 269 22 11 chr6 42215068 42215336 -147064218 - L1MC4 LINE L1 -973 7069 6799 424 287 114 36 chr6 42215417 42215584 -147063970 + MIR SINE MIR 49 228 -34 251 330 23 0 chr6 42215609 42215697 -147063857 - MIR3 SINE MIR -22 186 97 569 311 56 0 chr6 42215909 42216089 -147063465 + MIR SINE MIR 59 248 -14 220 333 77 0 chr6 42216296 42216413 -147063141 - L3 LINE CR1 -1024 553 428 274 330 19 9 chr6 42216503 42216609 -147062945 - L3 LINE CR1 -1286 291 185 1917 105 174 85 chr6 42217574 42218023 -147061531 + L1MC1 LINE L1 5845 6333 0 356 167 176 28 chr6 42218371 42218479 -147061075 - L2 LINE L2 0 3313 3190 22 35 0 0 chr6 42219014 42219043 -147060511 + AT_rich Low_complexity Low_complexity 1 29 0 707 218 93 21 chr6 42219047 42219240 -147060314 - MIR SINE MIR -10 252 46 806 318 27 27 chr6 42219324 42219661 -147059893 + HERVL LTR ERVL 4243 4579 -1075 209 318 59 35 chr6 42219720 42219805 -147059749 - L2 LINE L2 -605 2709 2623 416 281 189 0 chr6 42220666 42220819 -147058735 - MIR SINE MIR -78 184 3 5792 161 163 27 chr6 42222142 42223634 -147055920 + pTR5 LTR ERV1 744 2438 0 267 185 108 102 chr6 42224745 42224902 -147054652 - L1MA4 LINE L1 -27 6273 6116 900 184 16 41 chr6 42224910 42224941 -147054613 - L1MA4 LINE L1 -160 6140 6110 2202 92 3 0 chr6 42224941 42225224 -147054330 - AluSg SINE Alu -26 284 1 900 184 16 41 chr6 42225224 42225436 -147054118 - L1MA4 LINE L1 -190 6110 5903 6391 190 67 39 chr6 42225437 42227267 -147052287 - L1 LINE L1 -2337 3991 2212 1709 193 13 3 chr6 42227267 42227572 -147051982 - AluJb SINE Alu -4 308 1 6391 190 67 39 chr6 42227572 42228191 -147051363 - L1 LINE L1 -4116 2212 1611 2357 112 0 0 chr6 42228191 42228504 -147051050 - AluSq SINE Alu 0 313 1 6391 190 67 39 chr6 42228504 42229123 -147050431 - L1 LINE L1 -4717 1611 1010 770 132 25 0 chr6 42229123 42229244 -147050310 - MSTA LTR MaLR 0 428 305 6391 190 67 39 chr6 42229244 42229931 -147049623 - L1 LINE L1 -5318 1010 1 278 174 203 0 chr6 42230406 42230475 -147049079 - MER46C DNA MER2_type -209 129 47 564 197 111 0 chr6 42230478 42230595 -147048959 + FLAM_A SINE Alu 2 131 -2 1455 78 5 5 chr6 42230635 42230840 -147048714 - L1PB1 LINE L1 0 6151 5947 2249 107 0 3 chr6 42230991 42231290 -147048264 - AluSg SINE Alu -12 298 1 515 160 76 56 chr6 42231318 42231462 -147048092 - LTR45B LTR ERV1 0 489 343 675 204 7 13 chr6 42232190 42232342 -147047212 - MER106A DNA MER1_type -84 152 2 21 36 0 0 chr6 42232396 42232424 -147047130 + AT_rich Low_complexity Low_complexity 1 28 0 848 72 64 0 chr6 42233276 42233401 -147046153 + L1PA14 LINE L1 6023 6155 -6 1294 205 0 50 chr6 42235923 42235974 -147043580 - AluJb SINE Alu 0 312 260 1845 147 6 19 chr6 42235974 42236288 -147043266 + AluSx SINE Alu 1 310 -2 1294 205 0 50 chr6 42236288 42236519 -147043035 - AluJb SINE Alu -52 260 44 667 291 57 5 chr6 42236872 42237082 -147042472 + MIR SINE MIR 11 231 -31 455 310 176 21 chr6 42237399 42237638 -147041916 - L3 LINE CR1 -12 1565 1290 558 322 122 23 chr6 42237965 42238406 -147041148 - L3 LINE CR1 -310 1267 783 21 36 0 0 chr6 42238695 42238723 -147040831 + AT_rich Low_complexity Low_complexity 1 28 0 1857 139 4 8 chr6 42338851 42339118 -146940436 + AluJb SINE Alu 35 300 -12 1151 125 164 10 chr6 42339118 42339326 -146940228 + MSTA LTR MaLR 189 428 0 447 358 67 0 chr6 42339386 42339579 -146939975 + L1ME LINE L1 4910 5115 -1031 1727 170 13 0 chr6 42339592 42339903 -146939651 + L1 LINE L1 3867 4181 -1965 285 106 43 0 chr6 42339988 42340035 -146939519 + L1 LINE L1 4168 4216 -1930 294 95 0 0 chr6 42340227 42340269 -146939285 + (CA)n Simple_repeat Simple_repeat 1 42 0 1042 272 66 20 chr6 42340316 42340396 -146939158 + L1ME LINE L1 5106 5181 -981 2405 89 0 3 chr6 42340396 42340698 -146938856 + AluY SINE Alu 1 301 -10 1042 272 66 20 chr6 42340698 42341300 -146938254 + L1ME LINE L1 5181 5817 -345 1823 54 14 5 chr6 42341438 42341659 -146937895 - AluY SINE Alu -88 223 1 2321 82 0 3 chr6 42341661 42341952 -146937602 - AluSc SINE Alu -17 292 3 463 220 5 110 chr6 42341953 42342010 -146937544 + Charlie2 DNA MER1_type 2687 2748 -114 2277 116 0 0 chr6 42342010 42342303 -146937251 - AluSg SINE Alu -17 293 1 463 220 5 110 chr6 42342303 42342436 -146937118 + Charlie2 DNA MER1_type 2748 2857 -5 598 288 7 7 chr6 42342451 42342602 -146936952 + Zaphod DNA AcHobo 2 152 -3879 862 188 50 17 chr6 42342602 42342783 -146936771 - MLT1E LTR MaLR 0 593 407 1315 132 0 0 chr6 42342786 42342968 -146936586 + AluSq SINE Alu 1 182 -131 436 191 0 0 chr6 42343068 42343136 -146936418 + AluJb SINE Alu 212 279 -33 2220 128 0 6 chr6 42343139 42343451 -146936103 + AluSx SINE Alu 3 312 0 222 306 14 0 chr6 42343909 42343981 -146935573 - MIR3 SINE MIR -1 207 135 2330 92 10 0 chr6 42344524 42344827 -146934727 - AluSp SINE Alu -7 306 1 1961 124 6 59 chr6 42344990 42345379 -146934175 + AluSg SINE Alu 1 310 0 551 296 88 33 chr6 42345385 42345747 -146933807 + L1ME LINE L1 5423 5804 -358 899 134 0 143 chr6 42345752 42345864 -146933690 - MER3 DNA MER1_type 0 209 145 2235 75 18 4 chr6 42345864 42346144 -146933410 + AluSc SINE Alu 1 284 -25 899 134 0 143 chr6 42346144 42346262 -146933292 - MER3 DNA MER1_type -64 145 12 2137 95 11 11 chr6 42346362 42346676 -146932878 - AluSx SINE Alu 0 314 1 849 186 0 0 chr6 42346781 42346921 -146932633 - FLAM_C SINE Alu -3 140 1 548 157 0 0 chr6 42347605 42347688 -146931866 + AluJ/FLAM SINE Alu 2 84 -228 267 218 79 40 chr6 42347688 42347789 -146931765 - MLT1J LTR MaLR -46 465 361 337 368 0 7 chr6 42348195 42348347 -146931207 + C-rich Low_complexity Low_complexity 4 154 0 333 314 0 38 chr6 42348619 42348804 -146930750 + C-rich Low_complexity Low_complexity 2 179 0 344 167 14 0 chr6 42348909 42348981 -146930573 + GA-rich Low_complexity Low_complexity 1 73 0 700 67 0 0 chr6 42350337 42350427 -146929127 - LTR8 LTR ERV1 -601 90 1 556 155 0 0 chr6 42350427 42350511 -146929043 - AluJ/FLAM SINE Alu -227 85 2 2150 111 0 36 chr6 42350561 42350868 -146928686 + AluSq SINE Alu 1 296 -17 3904 115 13 0 chr6 42350884 42351431 -146928123 - MER41A LTR ERV1 0 554 1 1115 50 15 28 chr6 42351478 42351758 -146927796 + AluY SINE Alu 2 348 0 814 159 0 100 chr6 42351760 42351930 -146927624 - FAM SINE Alu -32 153 1 1121 142 0 34 chr6 42352264 42352440 -146927114 + AluSg/x SINE Alu 121 290 -20 1511 107 0 0 chr6 42352442 42352639 -146926915 + AluSc SINE Alu 1 197 -112 486 141 0 0 chr6 42352639 42352717 -146926837 + AluS SINE Alu 230 307 -4 703 136 24 32 chr6 42352717 42352842 -146926712 + AluSg SINE Alu 8 131 -179 1042 133 0 0 chr6 42352891 42353041 -146926513 + AluSg SINE Alu 121 270 -42 546 200 157 0 chr6 42353159 42353274 -146926280 + FLAM_A SINE Alu 1 133 0 892 129 0 23 chr6 42353325 42353457 -146926097 - FLAM_C SINE Alu -4 129 1 2142 99 35 0 chr6 42353482 42353766 -146925788 - AluSp SINE Alu -19 294 1 1523 126 36 0 chr6 42354030 42354252 -146925302 + MER30 DNA MER1_type 1 230 0 2123 101 0 49 chr6 42354529 42354835 -146924719 - AluSq SINE Alu -20 293 3 906 261 27 5 chr6 42354972 42355194 -146924360 - MIR SINE MIR 0 262 36 623 206 119 6 chr6 42356274 42356434 -146923120 - MIR SINE MIR -65 197 20 2140 104 25 0 chr6 42356876 42357156 -146922398 - AluSg SINE Alu -23 287 1 1062 105 0 0 chr6 42357159 42357292 -146922262 - AluSq/x SINE Alu -180 133 1 1068 170 147 0 chr6 42357292 42357516 -146922038 - MLT1C LTR MaLR -184 283 27 1782 95 56 0 chr6 42357517 42357769 -146921785 - L1PA11 LINE L1 -1 6173 5908 2039 138 3 13 chr6 42357788 42358093 -146921461 - AluSg SINE Alu -8 302 1 2130 126 13 0 chr6 42358098 42358400 -146921154 - AluY SINE Alu -5 306 1 267 122 0 0 chr6 42358427 42358468 -146921086 - MLT1C LTR MaLR -426 41 1 393 258 8 31 chr6 42358487 42358615 -146920939 + L1MC4 LINE L1 7918 8042 0 267 355 78 14 chr6 42358809 42358950 -146920604 - MIR SINE MIR -66 196 47 2449 58 0 14 chr6 42359019 42359178 -146920376 - AluY SINE Alu -20 291 136 2539 78 0 0 chr6 42359178 42359484 -146920070 - AluY SINE Alu -5 306 1 2449 58 0 14 chr6 42359484 42359618 -146919936 - AluY SINE Alu -175 136 2 1078 105 0 0 chr6 42359718 42359871 -146919683 + MLT1C LTR MaLR 315 467 0 523 174 43 105 chr6 42359878 42359967 -146919587 - L1MC4a LINE L1 -223 7585 7492 1864 123 30 4 chr6 42359967 42360235 -146919319 - AluSx SINE Alu -4 308 34 523 174 43 105 chr6 42360235 42360268 -146919286 - L1MC4a LINE L1 -316 7492 7606 988 174 0 6 chr6 42360268 42360435 -146919119 - FRAM SINE Alu 0 166 1 523 174 43 105 chr6 42360435 42360562 -146918992 - L1MC4a LINE L1 -201 7607 7474 1179 179 0 0 chr6 42360578 42360773 -146918781 - AluJo SINE Alu -1 311 117 2032 135 0 16 chr6 42360773 42361077 -146918477 + AluSg SINE Alu 1 299 -11 677 241 126 30 chr6 42361091 42361290 -146918264 + MLT1E LTR MaLR 194 411 -182 566 146 10 0 chr6 42361294 42361397 -146918157 - AluSg/x SINE Alu 0 312 209 461 189 0 0 chr6 42361605 42361679 -146917875 - MER2 DNA MER2_type 0 345 272 2027 104 42 7 chr6 42361681 42361968 -146917586 + AluSx SINE Alu 5 301 -11 2728 162 45 4 chr6 42362019 42362530 -146917024 - Tigger3b DNA MER2_type -2 1229 698 2416 78 0 20 chr6 42363217 42363523 -146916031 - AluY SINE Alu -11 300 1 431 128 86 8 chr6 42363523 42363640 -146915914 - Tigger3b DNA MER2_type -535 696 571 248 149 0 21 chr6 42363646 42363693 -146915861 + LTR56 LTR ERV1 349 394 -51 2351 108 0 0 chr6 42363699 42364005 -146915549 - AluY SINE Alu -5 306 1 3273 135 47 31 chr6 42364025 42364276 -146915278 - Tigger3b DNA MER2_type -2397 631 386 2455 67 0 13 chr6 42364276 42364575 -146914979 - AluY SINE Alu -16 295 1 3273 135 47 31 chr6 42364575 42364944 -146914610 - Tigger3b DNA MER2_type -2642 386 1 409 77 0 0 chr6 42364944 42365009 -146914545 - MER2 DNA MER2_type -155 190 126 2300 98 0 26 chr6 42365010 42365316 -146914238 + AluSq SINE Alu 1 298 -15 1084 109 7 14 chr6 42365317 42365464 -146914090 + AluSx SINE Alu 42 187 -125 22 35 0 0 chr6 42365674 42365703 -146913851 + GC_rich Low_complexity Low_complexity 1 29 0 2403 109 0 3 chr6 42366301 42366612 -146912942 + AluSg SINE Alu 1 310 0 449 288 60 38 chr6 42367424 42367608 -146911946 + MIR SINE MIR 74 261 -1 3410 142 57 91 chr6 42368231 42368454 -146911100 + L1MA8 LINE L1 4762 4991 -1300 1798 159 55 0 chr6 42368454 42368744 -146910810 + AluSx SINE Alu 1 306 -6 3410 142 57 91 chr6 42368744 42368786 -146910768 + L1MA8 LINE L1 4991 5033 -1258 1595 111 0 0 chr6 42368786 42368985 -146910569 + AluSc SINE Alu 1 199 -110 3410 142 57 91 chr6 42368985 42369024 -146910530 + L1MA8 LINE L1 5033 5072 -1219 411 125 0 0 chr6 42369024 42369088 -146910466 - AluSc SINE Alu -20 289 226 3410 142 57 91 chr6 42369088 42369284 -146910270 + L1MA8 LINE L1 5072 5273 -1018 1855 182 0 7 chr6 42369284 42369580 -146909974 - AluJo SINE Alu -18 294 1 3410 142 57 91 chr6 42369580 42370217 -146909337 + L1MA8 LINE L1 5273 5940 -351 1157 152 0 16 chr6 42370220 42370404 -146909150 + FRAM SINE Alu 1 174 -2 934 115 26 83 chr6 42370404 42370596 -146908958 + L1MA8 LINE L1 5944 6124 -167 903 136 23 0 chr6 42370596 42370728 -146908826 + AluJo SINE Alu 1 135 -177 1882 166 7 3 chr6 42370728 42371024 -146908530 + AluJo SINE Alu 1 297 -15 2365 96 0 0 chr6 42371215 42371507 -146908047 + AluSq SINE Alu 1 292 -21 2178 102 7 23 chr6 42371507 42371811 -146907743 + AluSp SINE Alu 1 300 -13 1929 161 28 0 chr6 42371822 42372113 -146907441 + AluJb SINE Alu 1 299 -13 2240 102 6 16 chr6 42372492 42372805 -146906749 + AluSg SINE Alu 1 310 0 273 383 26 0 chr6 42372850 42372965 -146906589 - L2 LINE L2 -39 3233 3116 311 71 0 0 chr6 42373273 42373315 -146906239 + AluJb SINE Alu 66 107 -195 710 291 31 22 chr6 42373525 42373752 -146905802 + MLT1J LTR MaLR 3 231 -280 1952 83 0 28 chr6 42373800 42374052 -146905502 + AluSx SINE Alu 3 247 -65 225 0 0 0 chr6 42375485 42375510 -146904044 + (TC)n Simple_repeat Simple_repeat 2 26 0 2407 88 3 0 chr6 42380852 42381147 -146898407 - AluSp SINE Alu -17 296 1 293 264 23 0 chr6 42381154 42381241 -146898313 + HAL1 LINE L1 822 910 -1597 2340 105 0 3 chr6 42382070 42382384 -146897170 + AluSq SINE Alu 1 313 0 2525 70 0 6 chr6 42382387 42382699 -146896855 + AluY SINE Alu 1 310 -1 2432 109 0 0 chr6 42382886 42383198 -146896356 + AluSx SINE Alu 1 312 0 877 199 8 134 chr6 42383229 42383366 -146896188 + AluJo SINE Alu 1 154 -158 2111 126 7 13 chr6 42383366 42383667 -146895887 + AluSx SINE Alu 1 299 -13 2028 130 14 10 chr6 42383677 42383970 -146895584 + AluSx SINE Alu 1 294 -18 2442 83 6 13 chr6 42383975 42384287 -146895267 + AluY SINE Alu 1 310 -1 877 199 8 134 chr6 42384287 42384378 -146895176 + AluJo SINE Alu 168 215 -97 3439 86 0 50 chr6 42384517 42384579 -146894975 + LTR8 LTR ERV1 191 255 -436 2364 115 0 0 chr6 42384579 42384892 -146894662 + AluSq SINE Alu 1 313 0 3439 86 0 50 chr6 42384892 42385184 -146894370 + LTR8 LTR ERV1 255 513 -178 2181 124 20 0 chr6 42385184 42385490 -146894064 + AluSx SINE Alu 1 312 0 3439 86 0 50 chr6 42385490 42385659 -146893895 + LTR8 LTR ERV1 513 689 -2 1282 187 0 0 chr6 42385660 42385874 -146893680 + AluJb SINE Alu 81 294 -18 1976 203 139 42 chr6 42386162 42386238 -146893316 - LTR29 LTR ERV1 0 622 555 1769 141 69 0 chr6 42386238 42386500 -146893054 + AluSx SINE Alu 1 280 -32 228 35 0 0 chr6 42386503 42386532 -146893022 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1976 203 139 42 chr6 42386532 42387018 -146892536 - LTR29 LTR ERV1 -68 554 1 2359 99 10 0 chr6 42387061 42387363 -146892191 - AluSx SINE Alu -7 305 1 2117 101 0 7 chr6 42387365 42387642 -146891912 - AluSx SINE Alu -14 298 24 721 107 0 107 chr6 42387647 42387796 -146891758 - FLAM_C SINE Alu 0 133 1 2519 231 184 19 chr6 42388426 42388705 -146890849 - L2 LINE L2 -700 2614 2382 2233 110 0 7 chr6 42388705 42388997 -146890557 - AluSx SINE Alu -22 290 1 2519 231 184 19 chr6 42388997 42389601 -146889953 - L2 LINE L2 -932 2382 1585 382 242 118 31 chr6 42390181 42390342 -146889212 - L2 LINE L2 -1 3312 3138 519 244 87 0 chr6 42390460 42390587 -146888967 + FLAM_A SINE Alu 1 138 -4 1003 106 19 50 chr6 42390640 42390800 -146888754 - AluJb SINE Alu -2 310 156 2525 60 0 7 chr6 42390893 42391194 -146888360 - AluY SINE Alu -12 299 1 2091 103 51 7 chr6 42391197 42391489 -146888065 - AluSx SINE Alu -7 305 1 2452 97 0 0 chr6 42391509 42391809 -146887745 - AluSg SINE Alu -10 300 1 2318 92 6 19 chr6 42392663 42392979 -146886575 - AluSx SINE Alu 0 312 1 242 91 30 45 chr6 42393210 42393276 -146886278 + GA-rich Low_complexity Low_complexity 2 66 0 245 258 0 15 chr6 42393303 42393369 -146886185 + GA-rich Low_complexity Low_complexity 3 67 0 28 0 0 0 chr6 42397018 42397046 -146882508 + AT_rich Low_complexity Low_complexity 1 28 0 1913 71 4 0 chr6 42398393 42398633 -146880921 + AluY SINE Alu 58 298 -13 2040 125 3 22 chr6 42398637 42398948 -146880606 + AluJb SINE Alu 2 306 -6 1121 236 125 30 chr6 42398987 42399551 -146880003 + L2 LINE L2 2713 3309 -4 185 312 160 24 chr6 42401410 42401535 -146878019 - MIR3 SINE MIR -64 144 3 23 33 0 0 chr6 42401998 42402028 -146877526 + AT_rich Low_complexity Low_complexity 1 30 0 669 282 116 33 chr6 42402049 42402531 -146877023 + L1M4 LINE L1 3865 4386 -1760 2481 60 0 13 chr6 42402534 42402848 -146876706 + AluY SINE Alu 1 310 -1 450 35 0 0 chr6 42402849 42402907 -146876647 + AluSq SINE Alu 134 191 -122 2539 75 7 0 chr6 42403029 42403336 -146876218 + AluSg1 SINE Alu 1 309 0 2123 133 0 10 chr6 42403402 42403702 -146875852 + AluSq SINE Alu 2 298 -15 201 296 0 0 chr6 42403830 42403901 -146875653 + (TATATG)n Simple_repeat Simple_repeat 3 73 0 23 0 0 0 chr6 42404012 42404035 -146875519 + AT_rich Low_complexity Low_complexity 1 23 0 2189 85 78 0 chr6 42404047 42404330 -146875224 - AluY SINE Alu -6 305 1 2278 89 0 0 chr6 42404333 42404613 -146874941 - AluSg SINE Alu -30 280 1 2156 128 10 19 chr6 42404668 42404981 -146874573 - AluSx SINE Alu -2 310 1 22 35 0 0 chr6 42404981 42405010 -146874544 + AT_rich Low_complexity Low_complexity 1 29 0 865 137 0 0 chr6 42405010 42405127 -146874427 - FLAM_C SINE Alu -25 118 2 1250 183 23 108 chr6 42405413 42405812 -146873742 - MLT1A1 LTR MaLR 0 365 1 229 37 0 0 chr6 42405994 42406021 -146873533 - LTR7 LTR ERV1 -423 27 1 1325 97 37 0 chr6 42406021 42406237 -146873317 - HERVH LTR ERV1 0 7713 7490 2241 109 0 26 chr6 42406237 42406549 -146873005 + AluSx SINE Alu 2 305 -7 245 138 28 0 chr6 42406572 42406627 -146872927 + Alu SINE Alu 1 34 -99 13343 94 4 0 chr6 42406627 42408530 -146871024 - HERVH LTR ERV1 -210 7503 5594 8356 110 13 38 chr6 42408527 42410365 -146869189 - HERVH LTR ERV1 -1290 5364 3357 * 6822 127 3 19 chr6 42410365 42411526 -146868028 - HERVH LTR ERV1 -4883 2830 1688 1177 86 0 0 chr6 42411526 42411677 -146867877 + AluSg/x SINE Alu 144 294 -16 899 120 0 0 chr6 42412738 42412871 -146866683 - L1PA15 LINE L1 -2 6163 6031 984 160 0 24 chr6 42412985 42413154 -146866400 + AluJb SINE Alu 134 298 -14 1075 83 0 0 chr6 42416748 42416881 -146862673 - AluSq/x SINE Alu -179 133 1 2180 177 21 38 chr6 42416883 42417306 -146862248 + MER67A LTR ERV1 80 498 -45 2008 123 3 0 chr6 42417306 42417626 -146861928 - AluSx SINE Alu 0 321 1 2180 177 21 38 chr6 42417626 42417670 -146861884 + MER67A LTR ERV1 498 541 -2 1224 145 0 0 chr6 42417671 42417878 -146861676 + L1MB5 LINE L1 5618 5824 -360 899 170 0 0 chr6 42417878 42418019 -146861535 + AluJb SINE Alu 166 306 -6 676 140 0 35 chr6 42418044 42418158 -146861396 + AluJ SINE Alu 25 134 -178 967 189 11 5 chr6 42419795 42419980 -146859574 + AluJ SINE Alu 120 305 -7 315 127 0 0 chr6 42419996 42420051 -146859503 + L1MB5 LINE L1 5834 5888 -286 237 313 0 0 chr6 42420130 42420245 -146859309 - L1M4 LINE L1 -2386 3760 3646 1859 123 0 53 chr6 42420247 42420548 -146859006 - AluSx SINE Alu -19 293 9 2321 92 0 16 chr6 42420643 42420958 -146858596 - AluSg SINE Alu 0 310 1 414 335 89 18 chr6 42421066 42421347 -146858207 + L2 LINE L2 2971 3271 -1 2489 58 0 3 chr6 42421751 42422061 -146857493 - AluY SINE Alu -2 309 1 187 250 33 50 chr6 42422953 42423013 -146856541 + MIR SINE MIR 3 61 -201 268 146 0 0 chr6 42423022 42423063 -146856491 + MER57A LTR ERV1 295 335 -68 1991 123 33 0 chr6 42423150 42423452 -146856102 + AluSq SINE Alu 1 312 -1 550 249 103 5 chr6 42423465 42423650 -146855904 - MLT1L LTR MaLR -5 610 408 360 264 7 68 chr6 42427789 42427937 -146851617 + MIR3 SINE MIR 50 188 -20 204 305 156 57 chr6 42429007 42429148 -146850406 - MER5B DNA MER1_type 0 178 24 2117 82 7 4 chr6 42429306 42429623 -146849931 - AluSp SINE Alu 0 321 4 1953 114 3 21 chr6 42429628 42429939 -146849615 - AluSq SINE Alu 0 306 1 1672 146 0 60 chr6 42430120 42430435 -146849119 - AluJb SINE Alu -12 300 5 476 90 0 0 chr6 42430445 42430512 -146849042 - Alu SINE Alu -7 305 239 269 258 129 0 chr6 42430617 42430710 -146848844 + L2 LINE L2 3168 3272 0 734 185 90 42 chr6 42430968 42431157 -146848397 - MIR SINE MIR -63 199 2 218 305 42 32 chr6 42433195 42433290 -146846264 + MIR SINE MIR 21 116 -146 528 121 0 0 chr6 42433445 42433528 -146846026 - MER33 DNA MER1_type -241 83 1 289 339 46 8 chr6 42433764 42433894 -146845660 + L2 LINE L2 2567 2701 -613 2303 102 0 0 chr6 42433921 42434225 -146845329 - AluSx SINE Alu -8 304 1 626 149 67 8 chr6 42434286 42434420 -146845134 - Charlie1 DNA MER1_type 0 2761 2620 604 269 20 61 chr6 42434404 42434533 -146845021 - Charlie1 DNA MER1_type -2522 239 106 * 2439 47 0 3 chr6 42434533 42434833 -146844721 - AluY SINE Alu -12 299 1 2455 48 0 0 chr6 42434841 42435136 -146844418 - AluY SINE Alu -15 296 2 604 269 20 61 chr6 42435136 42435242 -146844312 - Charlie1 DNA MER1_type -2662 99 5 378 231 46 31 chr6 42435577 42435707 -146843847 + L2 LINE L2 3134 3265 -7 186 133 0 0 chr6 42437033 42437063 -146842491 + (GGA)n Simple_repeat Simple_repeat 3 32 0 245 229 0 0 chr6 42437481 42437529 -146842025 + C-rich Low_complexity Low_complexity 1 48 0 207 272 54 22 chr6 42438517 42438609 -146840945 + MIR SINE MIR 29 123 -139 397 203 70 47 chr6 42440925 42441053 -146838501 + MIR SINE MIR 110 240 -22 194 125 0 0 chr6 42441112 42441144 -146838410 + MIR SINE MIR 84 115 -147 207 0 0 0 chr6 42444605 42444628 -146834926 + (TCCCC)n Simple_repeat Simple_repeat 1 23 0 472 328 0 0 chr6 42448758 42448889 -146830665 + MIR SINE MIR 18 148 -114 1268 175 30 43 chr6 42448902 42449028 -146830526 - Cheshire DNA MER1_type 0 2420 2294 2173 113 0 0 chr6 42449028 42449320 -146830234 - AluSx SINE Alu -20 292 1 2153 85 3 26 chr6 42449320 42449626 -146829928 - AluSx SINE Alu -13 299 1 1268 175 30 43 chr6 42449626 42449661 -146829893 - Cheshire DNA MER1_type -125 2295 2261 2202 105 3 3 chr6 42449661 42449966 -146829588 + AluSq SINE Alu 1 305 -8 1674 168 16 36 chr6 42449976 42450285 -146829269 + AluJb SINE Alu 1 303 -9 1268 175 30 43 chr6 42450285 42450481 -146829073 - Cheshire DNA MER1_type -168 2252 2055 1464 210 64 11 chr6 42450487 42450844 -146828710 - Cheshire DNA MER1_type -2044 376 1 244 258 108 32 chr6 42450853 42450946 -146828608 + MIR SINE MIR 162 261 -1 286 296 0 12 chr6 42451080 42451161 -146828393 - L2 LINE L2 0 3272 3193 2111 95 0 26 chr6 42451222 42451526 -146828028 - AluSg SINE Alu -14 296 1 2037 125 13 7 chr6 42451565 42451870 -146827684 - AluSx SINE Alu -5 307 1 977 129 6 79 chr6 42452009 42452187 -146827367 - AluJb SINE Alu -147 165 1 2199 100 3 0 chr6 42452267 42452558 -146826996 - AluSg SINE Alu -18 292 1 1693 136 53 0 chr6 42453385 42453650 -146825904 + AluSx SINE Alu 20 298 -14 303 307 109 0 chr6 42454280 42454381 -146825173 + MIR SINE MIR 110 221 -41 210 37 0 0 chr6 42458619 42458646 -146820908 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 1962 129 17 10 chr6 42459869 42460163 -146819391 + AluSx SINE Alu 1 296 -16 505 211 27 6 chr6 42460655 42460888 -146818666 + MLT1C LTR MaLR 54 322 -145 1351 143 160 4 chr6 42461029 42461266 -146818288 + AluJb SINE Alu 19 292 -20 1625 143 155 0 chr6 42461269 42461527 -146818027 + AluSx SINE Alu 1 298 -14 563 90 0 34 chr6 42461584 42461673 -146817881 - AluSq/x SINE Alu -185 127 42 764 239 106 9 chr6 42464145 42464363 -146815191 + MIR SINE MIR 3 241 -21 2495 45 3 7 chr6 42464516 42464808 -146814746 - AluY SINE Alu -20 291 1 542 212 15 30 chr6 42464834 42464966 -146814588 - FLAM_A SINE Alu -3 130 1 1567 143 121 7 chr6 42469044 42469316 -146810238 + AluJo SINE Alu 1 303 -9 2277 88 18 0 chr6 42469317 42469602 -146809952 + AluSg SINE Alu 1 290 -20 1685 198 10 17 chr6 42469805 42470093 -146809461 + AluJo SINE Alu 1 286 -26 2358 104 3 13 chr6 42470103 42470411 -146809143 + AluSq SINE Alu 3 307 -6 387 265 120 0 chr6 42471746 42471863 -146807691 + L2 LINE L2 3137 3267 -5 270 0 0 0 chr6 42472042 42472072 -146807482 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 390 21 0 0 chr6 42472071 42472118 -146807436 + (TG)n Simple_repeat Simple_repeat 2 48 0 1211 158 6 0 chr6 42472218 42472401 -146807153 - AluJb SINE Alu -8 304 121 6397 104 28 26 chr6 42472424 42473438 -146806116 - L1MA1 LINE L1 -104 6198 5188 2412 91 7 0 chr6 42473438 42473745 -146805809 - AluSp SINE Alu -4 309 1 6397 104 28 26 chr6 42473745 42474024 -146805530 - L1MA1 LINE L1 -1114 5188 4903 2141 126 3 0 chr6 42474024 42474318 -146805236 - AluSx SINE Alu -17 295 1 6397 104 28 26 chr6 42474318 42474373 -146805181 - L1MA1 LINE L1 -1399 4903 4850 267 194 107 97 chr6 42474374 42474477 -146805077 - AluJb SINE Alu -138 164 61 2118 128 7 3 chr6 42474489 42474786 -146804768 - AluSx SINE Alu -14 298 1 752 234 0 35 chr6 42475149 42475320 -146804234 + FRAM SINE Alu 1 165 -1 596 230 99 70 chr6 42475334 42475717 -146803837 - L1ME2 LINE L1 -277 5887 5470 1272 160 5 0 chr6 42475754 42475967 -146803587 - MER46A DNA MER2_type -22 214 1 239 253 27 0 chr6 42475967 42476042 -146803512 - L1ME2 LINE L1 -718 5444 5368 3156 95 24 32 chr6 42476043 42476536 -146803018 + LTR22B LTR ERVK 1 489 -3 305 316 39 26 chr6 42476585 42476639 -146802915 - L1ME2 LINE L1 -786 5360 5308 1703 157 78 0 chr6 42476639 42476920 -146802634 + AluSx SINE Alu 1 303 -9 305 316 39 26 chr6 42476920 42477020 -146802534 - L1ME2 LINE L1 -838 5308 5204 292 132 145 40 chr6 42477025 42477101 -146802453 - FLAM_A SINE Alu 0 133 50 2213 114 7 0 chr6 42477101 42477398 -146802156 - AluSq SINE Alu -14 299 1 395 233 83 89 chr6 42477398 42477471 -146802083 - L1ME2 LINE L1 -948 5198 5126 1748 163 13 26 chr6 42477471 42477777 -146801777 - AluJb SINE Alu -10 302 1 395 233 83 89 chr6 42477777 42477804 -146801750 - L1ME2 LINE L1 -1020 5126 5100 2287 107 0 7 chr6 42477804 42478103 -146801451 + AluSc SINE Alu 1 297 -12 395 233 83 89 chr6 42478103 42478168 -146801386 - L1ME2 LINE L1 -1046 5100 5036 1954 160 0 22 chr6 42478168 42478487 -146801067 + AluJb SINE Alu 1 312 0 395 233 83 89 chr6 42478487 42478632 -146800922 - L1ME2 LINE L1 -1110 5036 4888 1792 106 0 4 chr6 42478632 42478867 -146800687 - AluSg/x SINE Alu -1 309 76 334 218 40 10 chr6 42478882 42478983 -146800571 - L1ME2 LINE L1 -1528 4618 4515 1218 137 33 0 chr6 42478999 42479182 -146800372 - AluJo SINE Alu -11 301 113 23 0 0 0 chr6 42479186 42479209 -146800345 + AT_rich Low_complexity Low_complexity 1 23 0 246 268 14 94 chr6 42479399 42479537 -146800017 - L1ME2 LINE L1 -1959 4187 4061 951 148 0 138 chr6 42479545 42479663 -146799891 + AluJo SINE Alu 6 82 -230 2123 83 13 45 chr6 42479663 42479976 -146799578 - AluY SINE Alu -8 303 1 951 148 0 138 chr6 42479976 42480074 -146799480 + AluJo SINE Alu 82 192 -120 681 160 103 38 chr6 42480373 42480516 -146799038 - Charlie5 DNA MER1_type -22 2563 2400 1881 138 24 17 chr6 42480516 42480812 -146798742 + AluJb SINE Alu 7 304 -8 681 160 103 38 chr6 42480812 42480881 -146798673 - Charlie5 DNA MER1_type -185 2400 2337 1094 119 12 12 chr6 42481177 42481366 -146798188 - AluSg/x SINE Alu 0 312 124 269 245 21 98 chr6 42481520 42481663 -146797891 - L1MC5 LINE L1 -76 7885 7754 1024 164 7 0 chr6 42481719 42481871 -146797683 - FRAM SINE Alu -22 154 2 1051 191 122 57 chr6 42481881 42481969 -146797585 - L1MC5 LINE L1 -264 7697 7616 2405 96 0 7 chr6 42481969 42482272 -146797282 - AluSq SINE Alu -12 301 1 1051 191 122 57 chr6 42482272 42482660 -146796894 - L1MC5 LINE L1 -345 7616 7190 229 259 185 42 chr6 42482665 42482870 -146796684 - L1MEd LINE L1 -5025 1094 920 2486 93 0 0 chr6 42482870 42483171 -146796383 - AluSx SINE Alu -11 301 1 229 259 185 42 chr6 42483171 42483398 -146796156 - L1MEd LINE L1 -5199 920 600 2333 116 0 0 chr6 42484106 42484416 -146795138 - AluSg SINE Alu 0 310 1 1912 137 14 0 chr6 42487768 42488083 -146791471 + AluSx SINE Alu 1 312 0 1616 146 26 55 chr6 42488113 42488422 -146791132 + AluJo SINE Alu 1 300 -12 289 294 101 0 chr6 42488577 42488686 -146790868 - L2 LINE L2 -2 3311 3192 196 350 146 0 chr6 42488676 42488799 -146790755 - MIR SINE MIR -59 203 63 * 372 22 0 0 chr6 42489518 42489563 -146789991 + (TG)n Simple_repeat Simple_repeat 1 45 0 1317 118 0 20 chr6 42489752 42489947 -146789607 - AluSg/x SINE Alu 0 310 120 638 69 46 0 chr6 42490048 42490135 -146789419 + AluSp/q SINE Alu 203 293 -20 207 0 0 0 chr6 42490136 42490159 -146789395 + (TA)n Simple_repeat Simple_repeat 2 24 0 1089 104 0 0 chr6 42490164 42490299 -146789255 + AluSq/x SINE Alu 1 135 -178 2145 135 3 3 chr6 42490299 42490602 -146788952 + AluSq SINE Alu 1 303 -10 306 231 0 0 chr6 42490603 42490655 -146788899 + L1MC4 LINE L1 6651 6702 -1340 501 76 0 0 chr6 42490677 42490743 -146788811 + Alu SINE Alu 1 66 -243 2077 133 16 7 chr6 42490747 42491055 -146788499 + AluJb SINE Alu 1 311 -1 673 138 0 0 chr6 42491788 42492054 -146787500 - AluSp/q SINE Alu 0 440 175 311 335 131 11 chr6 42492180 42492356 -146787198 - L1M4 LINE L1 -1870 4276 4080 1428 157 4 44 chr6 42492452 42492574 -146786980 - AluJo SINE Alu -74 238 113 3068 100 4 39 chr6 42492574 42492664 -146786890 + L1PA11 LINE L1 5697 5789 -385 2203 113 27 7 chr6 42492664 42492965 -146786589 + AluSg SINE Alu 1 307 -3 2275 120 0 0 chr6 42492966 42493265 -146786289 + AluSg SINE Alu 2 300 -10 3068 100 4 39 chr6 42493265 42493661 -146785893 + L1PA11 LINE L1 5788 6168 -6 1428 157 4 44 chr6 42493661 42493786 -146785768 - AluJo SINE Alu -199 113 1 620 294 119 36 chr6 42494091 42494855 -146784699 - L2 LINE L2 0 3313 2485 222 305 105 11 chr6 42494888 42494983 -146784571 + L2 LINE L2 3209 3312 -1 1962 163 3 3 chr6 42495412 42495719 -146783835 - AluSx SINE Alu -5 307 1 22 35 0 0 chr6 42495854 42495883 -146783671 + AT_rich Low_complexity Low_complexity 1 29 0 218 169 42 28 chr6 42497013 42497084 -146782470 + GA-rich Low_complexity Low_complexity 1 72 0 473 238 161 26 chr6 42497602 42497625 -146781929 - MIR SINE MIR -10 252 233 932 169 33 0 chr6 42497625 42497808 -146781746 - MER5A DNA MER1_type 0 189 1 473 238 161 26 chr6 42497808 42497977 -146781577 - MIR SINE MIR -29 233 34 554 262 47 29 chr6 42501455 42501627 -146777927 - MIR SINE MIR -4 258 84 442 129 129 0 chr6 42501637 42501722 -146777832 + MER5A DNA MER1_type 8 103 -86 1743 177 0 44 chr6 42501881 42502197 -146777357 - AluJb SINE Alu -10 302 1 350 305 97 13 chr6 42503189 42503343 -146776211 + MER5A DNA MER1_type 7 173 -16 299 183 32 75 chr6 42503390 42503483 -146776071 + MIR SINE MIR 131 219 -43 262 242 10 30 chr6 42503805 42503904 -146775650 + C-rich Low_complexity Low_complexity 5 101 0 2369 89 33 0 chr6 42505680 42505982 -146773572 - AluSx SINE Alu 0 312 1 442 278 18 85 chr6 42506341 42506462 -146773092 - MIR SINE MIR 0 262 161 1920 163 23 7 chr6 42506462 42506763 -146772791 - AluJo SINE Alu -6 306 1 442 278 18 85 chr6 42506763 42506864 -146772690 - MIR SINE MIR -101 161 55 4571 83 18 32 chr6 42506864 42507488 -146772066 + SVA Other Other 772 1386 0 1556 100 62 147 chr6 42507644 42507984 -146771570 - AluYb8 SINE Alu -7 311 1 1643 177 115 41 chr6 42508670 42509105 -146770449 + LTR10A LTR ERV1 82 548 -61 673 257 38 27 chr6 42509114 42509297 -146770257 + LTR10A-int LTR ERV1 1 185 -6464 1716 100 15 92 chr6 42509298 42509634 -146769920 - LTR14B LTR ERVK -2 606 54 13804 58 2 25 chr6 42509643 42509783 -146769771 + Harlequin LTR ERV1 2035 2177 -4719 2280 98 0 26 chr6 42509783 42510089 -146769465 + AluSx SINE Alu 1 298 -14 13804 58 2 25 chr6 42510089 42510279 -146769275 + Harlequin LTR ERV1 2177 2370 -4526 2405 90 3 3 chr6 42510279 42510580 -146768974 + AluSp SINE Alu 1 301 -12 13804 58 2 25 chr6 42510580 42510605 -146768949 + Harlequin LTR ERV1 2370 2394 -4502 2527 81 3 0 chr6 42510605 42510915 -146768639 + AluY SINE Alu 1 311 0 13804 58 2 25 chr6 42510915 42510993 -146768561 + Harlequin LTR ERV1 2394 2472 -4424 2364 82 0 3 chr6 42510993 42511287 -146768267 + AluSx SINE Alu 1 293 -19 13804 58 2 25 chr6 42511287 42513002 -146766552 + Harlequin LTR ERV1 2472 4157 -2739 1255 178 186 26 chr6 42513082 42513470 -146766084 - LTR7 LTR ERV1 0 450 1 406 168 196 133 chr6 42513981 42514104 -146765450 + L1MC5 LINE L1 6730 6869 -1092 2411 54 24 3 chr6 42514104 42514399 -146765155 - AluY SINE Alu -10 301 1 406 168 196 133 chr6 42514399 42514448 -146765106 + L1MC5 LINE L1 6869 6913 -1048 282 116 0 0 chr6 42514458 42514501 -146765053 + Alu SINE Alu 1 43 -265 510 148 0 0 chr6 42514502 42514590 -146764964 + AluJ/FRAM SINE Alu 218 305 -7 665 253 86 8 chr6 42514607 42514852 -146764702 + L1MC5 LINE L1 6971 7234 -727 349 256 152 26 chr6 42514943 42515212 -146764342 + L1MC5 LINE L1 7397 7699 -262 344 282 43 103 chr6 42515386 42515620 -146763934 + L1MEd LINE L1 329 548 -5571 * 719 253 54 17 chr6 42515619 42515860 -146763694 + L1MC4a LINE L1 5613 5862 -1946 2036 172 0 0 chr6 42515860 42516163 -146763391 - AluJb SINE Alu -9 303 1 349 268 57 8 chr6 42517316 42517439 -146762115 - L2 LINE L2 -350 2964 2836 212 318 56 67 chr6 42518646 42518841 -146760713 - L2 LINE L2 -238 3034 2842 658 204 7 15 chr6 42520152 42520289 -146759265 + MER2 DNA MER2_type 1 136 -209 2293 85 3 0 chr6 42520302 42520584 -146758970 - AluSx SINE Alu -29 283 1 938 130 36 148 chr6 42520584 42520757 -146758797 + AluJo SINE Alu 115 259 -53 2461 71 7 10 chr6 42520757 42521065 -146758489 - AluSc SINE Alu -2 307 1 938 130 36 148 chr6 42521065 42521114 -146758440 + AluJo SINE Alu 259 312 0 410 296 107 0 chr6 42521268 42521437 -146758117 - Charlie2 DNA MER1_type -2561 221 35 201 313 12 24 chr6 42523646 42523729 -146755825 + CT-rich Low_complexity Low_complexity 4 85 0 276 100 0 0 chr6 42525166 42525206 -146754348 + (GGA)n Simple_repeat Simple_repeat 2 41 0 268 260 0 0 chr6 42525217 42525290 -146754264 + GA-rich Low_complexity Low_complexity 2 74 0 1308 104 50 59 chr6 42526865 42527085 -146752469 - AluJb SINE Alu -7 305 88 33 0 0 0 chr6 42527625 42527658 -146751896 + GC_rich Low_complexity Low_complexity 1 33 0 644 124 10 0 chr6 42527843 42527940 -146751614 - AluS SINE Alu -214 99 2 709 128 16 0 chr6 42527951 42528076 -146751478 + CT-rich Low_complexity Low_complexity 2 128 0 926 170 24 24 chr6 42528084 42528249 -146751305 - AluJb SINE Alu -10 302 138 1008 195 53 11 chr6 42528297 42528690 -146750864 + Charlie4a DNA MER1_type 61 507 -1 2423 102 0 3 chr6 42528756 42529069 -146750485 - AluSx SINE Alu 0 312 1 692 223 42 12 chr6 42529325 42529422 -146750132 + MER97b DNA MER1_type? 6 112 -941 2372 102 0 0 chr6 42529422 42529726 -146749828 - AluSx SINE Alu -8 304 1 692 223 42 12 chr6 42529726 42529794 -146749760 + MER97b DNA MER1_type? 112 176 -877 501 32 0 0 chr6 42529872 42529935 -146749619 + (CA)n Simple_repeat Simple_repeat 2 64 0 563 241 0 50 chr6 42530527 42530668 -146748886 - MLT1E3 LTR MaLR -436 188 55 1716 161 12 62 chr6 42531262 42531388 -146748166 + AluJb SINE Alu 1 132 -180 2365 80 7 0 chr6 42531388 42531677 -146747877 - AluSg SINE Alu -19 291 1 1716 161 12 62 chr6 42531677 42531873 -146747681 + AluJb SINE Alu 132 307 -5 2331 118 0 0 chr6 42532001 42532306 -146747248 - AluSq SINE Alu -8 305 1 650 233 71 57 chr6 42532973 42532997 -146746557 - MIR SINE MIR -30 232 210 2447 105 57 38 chr6 42532997 42533067 -146746487 - MSTA LTR MaLR 0 428 361 2390 100 0 0 chr6 42533067 42533367 -146746187 + AluSx SINE Alu 2 301 -11 1858 148 28 24 chr6 42533374 42533665 -146745889 + AluJb SINE Alu 2 293 -19 2447 105 57 38 chr6 42533665 42534006 -146745548 - MSTA LTR MaLR -72 356 1 650 233 71 57 chr6 42534006 42534191 -146745363 - MIR SINE MIR -52 210 20 280 152 30 0 chr6 42534197 42534263 -146745291 + CT-rich Low_complexity Low_complexity 2 69 0 1793 148 76 10 chr6 42534266 42534557 -146744997 - AluSg SINE Alu 0 310 1 2197 108 7 10 chr6 42534567 42534873 -146744681 - AluSx SINE Alu -7 305 1 1849 325 148 42 chr6 42534890 42536253 -146743301 + L2 LINE L2 71 1289 -2025 1750 170 0 65 chr6 42536253 42536576 -146742978 + AluJo SINE Alu 1 302 -10 1849 325 148 42 chr6 42536576 42537255 -146742299 + L2 LINE L2 1289 2338 -976 2380 95 0 3 chr6 42537255 42537559 -146741995 - AluSq SINE Alu -10 303 1 1849 325 148 42 chr6 42537559 42537597 -146741957 + L2 LINE L2 2338 2371 -943 1575 238 37 17 chr6 42537604 42538011 -146741543 + Zaphod DNA AcHobo 1 415 -3616 935 106 20 7 chr6 42538137 42538288 -146741266 + L1PB1 LINE L1 5997 6149 -2 278 242 32 11 chr6 42538288 42538383 -146741171 + Zaphod DNA AcHobo 605 701 -3330 914 202 93 0 chr6 42538383 42538576 -146740978 + MER2 DNA MER2_type 1 211 -134 386 52 0 35 chr6 42538589 42538647 -146740907 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2170 107 7 3 chr6 42538647 42538936 -146740618 - AluY SINE Alu -19 292 3 294 261 15 0 chr6 42538957 42539022 -146740532 + MER2 DNA MER2_type 280 345 0 1790 185 25 30 chr6 42539046 42539257 -146740297 - MLT1A1 LTR MaLR 0 365 155 2042 152 0 0 chr6 42539257 42539547 -146740007 - AluSx SINE Alu -22 290 1 1790 185 25 30 chr6 42539547 42539702 -146739852 - MLT1A1 LTR MaLR -210 155 1 21 0 0 0 chr6 42539706 42539727 -146739827 + AT_rich Low_complexity Low_complexity 1 21 0 1857 174 3 0 chr6 42539734 42540022 -146739532 - AluJb SINE Alu -23 289 1 1270 206 0 0 chr6 42540116 42540334 -146739220 + AluJo SINE Alu 3 220 -92 340 74 0 19 chr6 42540334 42540388 -146739166 + AluSq/x SINE Alu 86 138 -165 288 186 0 0 chr6 42540406 42540465 -146739089 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 1060 190 17 0 chr6 42540465 42540644 -146738910 + AluJb SINE Alu 125 306 -6 301 273 100 0 chr6 42540717 42540827 -146738727 + MER102b DNA MER1_type 208 328 -13 214 162 0 0 chr6 42540967 42541004 -146738550 + (CAA)n Simple_repeat Simple_repeat 2 38 0 451 237 52 15 chr6 42541012 42541147 -146738407 - MIR SINE MIR -20 242 103 2326 95 14 0 chr6 42541156 42541451 -146738103 + AluSg SINE Alu 1 299 -11 24 0 0 0 chr6 42541688 42541712 -146737842 + AT_rich Low_complexity Low_complexity 1 24 0 1041 241 125 29 chr6 42642858 42643421 -146636133 - L2 LINE L2 -4 3309 2713 2047 123 3 23 chr6 42643460 42643769 -146635785 - AluJb SINE Alu -8 304 2 2361 77 3 0 chr6 42643773 42644071 -146635483 - AluY SINE Alu -12 299 1 537 163 10 0 chr6 42644072 42644170 -146635384 + MER20 DNA MER1_type 60 158 -61 375 130 0 0 chr6 42644174 42644228 -146635326 - MER20 DNA MER1_type -165 54 1 2485 229 172 46 chr6 42644230 42644515 -146635039 - L2 LINE L2 -694 2620 2372 2233 110 0 7 chr6 42644515 42644807 -146634747 - AluSx SINE Alu -22 290 1 2485 229 172 46 chr6 42644807 42645500 -146634054 - L2 LINE L2 -942 2372 1519 382 242 118 31 chr6 42645994 42646155 -146633399 - L2 LINE L2 -1 3312 3138 519 244 87 0 chr6 42646273 42646400 -146633154 + FLAM_A SINE Alu 1 138 -4 1019 105 19 49 chr6 42646453 42646615 -146632939 - AluJb SINE Alu 0 312 156 2551 57 0 7 chr6 42646708 42647009 -146632545 - AluY SINE Alu -12 299 1 2108 102 51 7 chr6 42647012 42647306 -146632248 - AluSx SINE Alu -5 307 1 2435 97 0 0 chr6 42647326 42647624 -146631930 - AluSg SINE Alu -12 298 1 2318 92 6 19 chr6 42648478 42648794 -146630760 - AluSx SINE Alu 0 312 1 461 189 0 0 chr6 42649062 42649136 -146630418 - MER2 DNA MER2_type 0 345 272 2026 104 42 7 chr6 42649138 42649425 -146630129 + AluSx SINE Alu 5 301 -11 2717 164 45 4 chr6 42649476 42649987 -146629567 - Tigger3b DNA MER2_type -2 1229 698 2413 78 0 20 chr6 42650674 42650980 -146628574 - AluY SINE Alu -11 300 1 431 128 86 8 chr6 42650980 42651097 -146628457 - Tigger3b DNA MER2_type -535 696 571 248 149 0 21 chr6 42651103 42651150 -146628404 + LTR56 LTR ERV1 349 394 -51 2341 106 0 0 chr6 42651156 42651458 -146628096 - AluY SINE Alu -5 306 5 3261 137 47 31 chr6 42651482 42651733 -146627821 - Tigger3b DNA MER2_type -2397 631 386 2455 67 0 13 chr6 42651733 42652032 -146627522 - AluY SINE Alu -16 295 1 3261 137 47 31 chr6 42652032 42652401 -146627153 - Tigger3b DNA MER2_type -2642 386 1 814 155 5 137 chr6 42652401 42652467 -146627087 - MER2 DNA MER2_type -155 190 117 2300 98 0 26 chr6 42652467 42652773 -146626781 + AluSq SINE Alu 1 298 -15 1760 125 12 0 chr6 42652774 42653014 -146626540 + AluSp SINE Alu 42 284 -29 814 155 5 137 chr6 42653014 42653164 -146626390 - MER2 DNA MER2_type -227 118 1 212 318 56 67 chr6 42654476 42654671 -146624883 + L2 LINE L2 2842 3034 -238 349 268 57 8 chr6 42655878 42656001 -146623553 + L2 LINE L2 2836 2964 -350 2036 172 0 0 chr6 42657154 42657457 -146622097 + AluJb SINE Alu 1 303 -9 719 253 54 17 chr6 42657457 42657698 -146621856 - L1MC4a LINE L1 -1946 5862 5613 344 282 43 103 chr6 42657697 42657931 -146621623 - L1MEd LINE L1 -5571 548 329 * 349 256 152 26 chr6 42658105 42658374 -146621180 - L1MC5 LINE L1 -262 7699 7397 665 253 86 8 chr6 42658465 42658710 -146620844 - L1MC5 LINE L1 -727 7234 6971 510 148 0 0 chr6 42658727 42658815 -146620739 - AluJ/FRAM SINE Alu -7 305 218 282 116 0 0 chr6 42658816 42658859 -146620695 - Alu SINE Alu -256 43 1 406 168 196 133 chr6 42658869 42658918 -146620636 - L1MC5 LINE L1 -1048 6913 6869 2411 54 24 3 chr6 42658918 42659213 -146620341 + AluY SINE Alu 1 301 -10 406 168 196 133 chr6 42659213 42659336 -146620218 - L1MC5 LINE L1 -1092 6869 6730 495 0 0 0 chr6 42659733 42659788 -146619766 + (TG)n Simple_repeat Simple_repeat 2 56 0 383 297 0 0 chr6 42660945 42661056 -146618498 + C-rich Low_complexity Low_complexity 1 111 0 22 35 0 0 chr6 42661286 42661315 -146618239 + GC_rich Low_complexity Low_complexity 1 29 0 2403 109 0 3 chr6 42661914 42662225 -146617329 + AluSg SINE Alu 1 310 0 468 288 60 38 chr6 42663033 42663217 -146616337 + MIR SINE MIR 74 261 -1 28 0 0 0 chr6 42666360 42666388 -146613166 + AT_rich Low_complexity Low_complexity 1 28 0 245 258 0 15 chr6 42670037 42670103 -146609451 + CT-rich Low_complexity Low_complexity 3 67 0 537 119 8 37 chr6 42670132 42670266 -146609288 + (TCC)n Simple_repeat Simple_repeat 1 130 0 333 314 0 38 chr6 42670371 42670556 -146608998 + G-rich Low_complexity Low_complexity 2 179 0 277 291 17 43 chr6 42670827 42670944 -146608610 + GA-rich Low_complexity Low_complexity 4 117 0 229 258 16 0 chr6 42675434 42675496 -146604058 + GA-rich Low_complexity Low_complexity 2 64 0 275 247 0 26 chr6 42676579 42676656 -146602898 + CT-rich Low_complexity Low_complexity 4 78 0 277 232 0 42 chr6 42677153 42677248 -146602306 + (TG)n Simple_repeat Simple_repeat 2 92 0 307 247 11 22 chr6 42677877 42677966 -146601588 + (CGG)n Simple_repeat Simple_repeat 3 90 0 221 239 28 0 chr6 42677968 42678039 -146601515 + (CCG)n Simple_repeat Simple_repeat 1 73 0 200 247 54 0 chr6 42677994 42678087 -146601467 + (CCGCG)n Simple_repeat Simple_repeat 5 102 0 * 234 252 34 34 chr6 42678142 42678261 -146601293 + G-rich Low_complexity Low_complexity 1 119 0 192 77 0 0 chr6 42678266 42678292 -146601262 + (CGG)n Simple_repeat Simple_repeat 3 28 0 225 325 12 0 chr6 42678999 42679082 -146600472 + GA-rich Low_complexity Low_complexity 3 86 0 281 282 17 17 chr6 42679651 42679768 -146599786 + (TG)n Simple_repeat Simple_repeat 2 118 0 230 245 0 0 chr6 42682353 42682402 -146597152 + GA-rich Low_complexity Low_complexity 1 49 0 246 62 0 0 chr6 42682496 42682528 -146597026 + (TG)n Simple_repeat Simple_repeat 1 32 0 30 27 0 0 chr6 42683719 42683756 -146595798 + GC_rich Low_complexity Low_complexity 1 37 0 198 322 17 0 chr6 42684246 42684305 -146595249 - L2 LINE L2 0 3313 3254 842 138 8 23 chr6 42684536 42684666 -146594888 - FLAM_C SINE Alu -3 130 3 1588 85 163 60 chr6 42684847 42685130 -146594424 + AluSx SINE Alu 1 312 0 251 292 45 11 chr6 42685867 42685956 -146593598 - L3 LINE CR1 -1 1576 1485 273 197 16 134 chr6 42685967 42686094 -146593460 + MIR3 SINE MIR 97 208 0 * 317 322 231 30 chr6 42686069 42686344 -146593210 - L3 LINE CR1 -336 1241 1022 2308 106 0 0 chr6 42686344 42686646 -146592908 - AluSx SINE Alu -10 302 1 317 322 231 30 chr6 42686646 42686799 -146592755 - L3 LINE CR1 -555 1022 727 1618 209 34 59 chr6 42686815 42687181 -146592373 - MLT1C LTR MaLR -5 462 109 2023 114 3 17 chr6 42687181 42687478 -146592076 - AluSq SINE Alu -20 293 1 1618 209 34 59 chr6 42687478 42687585 -146591969 - MLT1C LTR MaLR -358 109 1 315 259 76 44 chr6 42689033 42689191 -146590363 - L2 LINE L2 -23 3290 3128 2258 99 3 0 chr6 42689598 42689892 -146589662 + AluSp SINE Alu 1 295 -18 306 409 39 18 chr6 42689992 42690273 -146589281 - L2 LINE L2 -725 2589 2303 363 232 21 35 chr6 42690397 42690539 -146589015 + CT-rich Low_complexity Low_complexity 6 145 0 234 62 0 0 chr6 42690707 42690739 -146588815 + (TC)n Simple_repeat Simple_repeat 1 32 0 180 163 0 0 chr6 42691014 42691057 -146588497 + (CAGGG)n Simple_repeat Simple_repeat 3 45 0 441 54 0 0 chr6 42691118 42691174 -146588380 + (TG)n Simple_repeat Simple_repeat 1 56 0 306 293 0 30 chr6 42692531 42692695 -146586859 + CT-rich Low_complexity Low_complexity 3 161 0 246 62 0 0 chr6 42693448 42693480 -146586074 + (CCA)n Simple_repeat Simple_repeat 2 33 0 380 230 0 0 chr6 42694108 42694182 -146585372 - L2 LINE L2 -7 3306 3233 657 164 22 60 chr6 42695371 42695554 -146584000 + MER105 DNA DNA 28 203 -1 524 157 327 19 chr6 42695560 42695665 -146583889 + MER3 DNA MER1_type 2 73 -136 1683 150 0 73 chr6 42695665 42695992 -146583562 - AluJb SINE Alu -9 303 1 524 157 327 19 chr6 42695992 42696045 -146583509 + MER3 DNA MER1_type 73 209 0 242 254 0 0 chr6 42702962 42703021 -146576533 + C-rich Low_complexity Low_complexity 5 63 0 201 178 22 0 chr6 42703486 42703531 -146576023 + C-rich Low_complexity Low_complexity 4 49 0 224 321 168 0 chr6 42704106 42704283 -146575271 + MIR SINE MIR 40 253 -9 233 196 0 0 chr6 42705756 42705802 -146573752 + GA-rich Low_complexity Low_complexity 3 48 0 2023 108 0 11 chr6 42707780 42708088 -146571466 - AluY SINE Alu 0 305 1 2159 120 3 0 chr6 42708189 42708498 -146571056 - AluSx SINE Alu -2 310 1 888 143 0 0 chr6 42708500 42708626 -146570928 - AluJo/FLAM SINE Alu -175 127 2 349 339 0 8 chr6 42709251 42709372 -146570182 - LTR67 LTR ERVL -3 554 435 402 209 88 0 chr6 42710102 42710193 -146569361 + MIR SINE MIR 163 261 -1 7375 30 0 1 chr6 42710269 42711127 -146568427 + L1PA3 LINE L1 5296 6152 -3 2287 105 0 9 chr6 42711499 42711814 -146567740 - AluSx SINE Alu 0 312 1 421 317 209 11 chr6 42712003 42712372 -146567182 + L2 LINE L2 2324 2765 -549 454 165 304 0 chr6 42712624 42712739 -146566815 + L1PA16 LINE L1 6006 6155 -11 2106 117 0 0 chr6 42712898 42713204 -146566350 - AluSx SINE Alu 0 306 1 718 179 0 45 chr6 42713207 42713341 -146566213 - AluJo/FLAM SINE Alu -182 130 3 758 322 114 20 chr6 42713556 42714061 -146565493 - L2 LINE L2 -417 2897 2338 2166 101 45 0 chr6 42714061 42714348 -146565206 + AluSx SINE Alu 1 300 -12 758 322 114 20 chr6 42714348 42714379 -146565175 - L2 LINE L2 -976 2338 2311 534 194 75 0 chr6 42714408 42714542 -146565012 - Cheshire DNA MER1_type -2 2418 2275 998 118 20 0 chr6 42714544 42714697 -146564857 - MSTC LTR MaLR -51 377 222 3063 125 91 65 chr6 42714701 42714817 -146564737 - Cheshire DNA MER1_type -146 2274 2162 2267 113 0 0 chr6 42714817 42715117 -146564437 - AluSx SINE Alu -12 300 1 3063 125 91 65 chr6 42715117 42715289 -146564265 - Cheshire DNA MER1_type -258 2162 1996 2790 82 3 0 chr6 42715289 42715641 -146563913 + THE1A LTR MaLR 3 355 0 12160 90 5 0 chr6 42715641 42717214 -146562340 + THE1A-int LTR MaLR 1 1580 0 2582 87 17 22 chr6 42717214 42717571 -146561983 + THE1A LTR MaLR 1 355 0 3063 125 91 65 chr6 42717571 42717683 -146561871 - Cheshire DNA MER1_type -424 1996 1888 1829 145 10 24 chr6 42717683 42717972 -146561582 - AluJb SINE Alu -17 295 11 3063 125 91 65 chr6 42717972 42718240 -146561314 - Cheshire DNA MER1_type -532 1888 1585 1848 160 3 10 chr6 42718240 42718540 -146561014 + AluSx SINE Alu 1 298 -14 2205 101 6 15 chr6 42718546 42718872 -146560682 + L1PA15 LINE L1 5838 6160 -5 1982 178 0 6 chr6 42718872 42719214 -146560340 - MLT2C1 LTR ERVL -57 340 1 610 203 0 8 chr6 42719230 42719357 -146560197 - Cheshire DNA MER1_type -919 1501 1376 1143 183 193 19 chr6 42719357 42719668 -146559886 - MLT1A1 LTR MaLR 0 365 1 * 3783 174 36 38 chr6 42719668 42720451 -146559103 - Cheshire DNA MER1_type -1053 1367 584 2387 81 0 3 chr6 42720451 42720747 -146558807 - AluY SINE Alu -16 295 1 3783 174 36 38 chr6 42720747 42720788 -146558766 - Cheshire DNA MER1_type -1836 584 543 2246 105 6 25 chr6 42720788 42721102 -146558452 - AluSx SINE Alu -4 308 1 3783 174 36 38 chr6 42721102 42721128 -146558426 - Cheshire DNA MER1_type -1877 543 518 1879 176 10 0 chr6 42721131 42721438 -146558116 + AluJb SINE Alu 1 310 -2 476 59 0 0 chr6 42721461 42721529 -146558025 + L1PB1 LINE L1 6084 6151 0 693 152 25 61 chr6 42721559 42721756 -146557798 + L1MC5 LINE L1 7334 7523 -438 294 29 0 0 chr6 42721764 42721799 -146557755 + U2 snRNA snRNA 1 35 -153 854 203 13 0 chr6 42721805 42721963 -146557591 + FRAM SINE Alu 1 160 -16 339 221 7 93 chr6 42721963 42722103 -146557451 + L1MC5 LINE L1 7522 7649 -312 2070 92 0 66 chr6 42722104 42722407 -146557147 - AluSp SINE Alu -4 309 27 2559 47 3 0 chr6 42722518 42722814 -146556740 + AluY SINE Alu 1 297 -14 2402 67 0 17 chr6 42722825 42723122 -146556432 + AluY SINE Alu 1 292 -19 664 224 0 8 chr6 42723131 42723256 -146556298 + FLAM_A SINE Alu 2 125 -8 456 211 60 70 chr6 42723551 42723736 -146555818 + L1MC5 LINE L1 5831 6013 -1795 350 129 0 16 chr6 42723846 42723908 -146555646 + AluJ SINE Alu 67 127 -175 992 144 39 0 chr6 42723954 42724107 -146555447 + AluJ SINE Alu 132 290 -22 210 37 0 0 chr6 42724107 42724134 -146555420 + (GA)n Simple_repeat Simple_repeat 2 28 0 2435 93 0 0 chr6 42724156 42724456 -146555098 - AluSc SINE Alu -9 300 1 2208 106 11 0 chr6 42724651 42724973 -146554581 - AluSq SINE Alu 0 325 1 592 272 55 86 chr6 42724974 42725105 -146554449 + L1MC5 LINE L1 6495 6628 -1333 2318 103 0 13 chr6 42725105 42725417 -146554137 + AluY SINE Alu 1 308 -3 592 272 55 86 chr6 42725417 42725437 -146554117 + L1MC5 LINE L1 6628 6647 -1314 1810 164 13 17 chr6 42725437 42725736 -146553818 + AluJb SINE Alu 1 298 -14 592 272 55 86 chr6 42725736 42725770 -146553784 + L1MC5 LINE L1 6647 6681 -1280 207 0 0 0 chr6 42725770 42725793 -146553761 + (CA)n Simple_repeat Simple_repeat 2 24 0 592 272 55 86 chr6 42725793 42725998 -146553556 + L1MC5 LINE L1 6681 6891 -1070 2229 104 23 10 chr6 42725998 42726306 -146553248 + AluSx SINE Alu 1 312 0 592 272 55 86 chr6 42726306 42726574 -146552980 + L1MC5 LINE L1 6891 7046 -915 1896 153 0 29 chr6 42726574 42726882 -146552672 + AluJb SINE Alu 1 299 -13 592 272 55 86 chr6 42726882 42726974 -146552580 + L1MC5 LINE L1 7046 7139 -822 2117 119 17 10 chr6 42726998 42727291 -146552263 - AluSx SINE Alu -17 295 1 283 288 86 23 chr6 42727345 42727602 -146551952 + L1MC4 LINE L1 7150 7422 -620 2326 101 0 22 chr6 42728468 42728785 -146550769 - AluSg SINE Alu 0 310 1 1630 191 32 67 chr6 42728876 42729103 -146550451 - MLT1B LTR MaLR 0 390 182 2133 103 31 0 chr6 42729103 42729393 -146550161 - AluSx SINE Alu -13 299 1 1630 191 32 67 chr6 42729393 42729568 -146549986 - MLT1B LTR MaLR -208 182 2 465 247 67 0 chr6 42729927 42730077 -146549477 - L1M4 LINE L1 -1353 4793 4634 354 248 119 0 chr6 42730080 42730181 -146549373 - L1M4 LINE L1 -1544 4602 4490 1211 99 0 25 chr6 42730186 42730378 -146549176 - AluSg/x SINE Alu 0 310 131 1754 181 38 91 chr6 42730393 42730567 -146548987 - L1MA9 LINE L1 -30 6282 6100 2223 96 7 10 chr6 42730567 42730869 -146548685 + AluSx SINE Alu 1 301 -11 1754 181 38 91 chr6 42730869 42731252 -146548302 - L1MA9 LINE L1 -212 6100 5755 1687 171 16 3 chr6 42731249 42731558 -146547996 + L1M2 LINE L1 5409 5721 -591 * 1633 143 0 123 chr6 42731571 42731715 -146547839 + AluJo SINE Alu 1 80 -232 2152 125 0 0 chr6 42731715 42732004 -146547550 - AluSx SINE Alu -9 303 15 1633 143 0 123 chr6 42732004 42732201 -146547353 + AluJo SINE Alu 80 300 -12 3136 163 54 12 chr6 42732208 42732888 -146546666 - L1MB4 LINE L1 0 6678 5772 534 70 0 0 chr6 42732892 42732963 -146546591 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1202 104 0 25 chr6 42732968 42733131 -146546423 - AluSp SINE Alu -30 283 125 339 109 0 0 chr6 42733135 42733190 -146546364 - L1MB4 LINE L1 -883 5761 5707 * 351 176 19 102 chr6 42733169 42733277 -146546277 - L1M4 LINE L1 -4968 1574 1476 1154 176 7 26 chr6 42733290 42733562 -146545992 - L1MB4 LINE L1 -941 5703 5437 * 1888 188 65 2 chr6 42733548 42733995 -146545559 - L1MB4 LINE L1 -4606 2040 1566 7928 18 0 6 chr6 42733995 42735115 -146544439 - L1PA3 LINE L1 0 6155 5041 11002 33 5 116 chr6 42735120 42736678 -146542876 - SVA Other Other 0 1386 2 242 203 0 32 chr6 42736687 42736810 -146542744 + GA-rich Low_complexity Low_complexity 3 121 0 456 203 7 22 chr6 42736811 42736949 -146542605 - L1MB4 LINE L1 -4963 1579 1444 194 0 0 37 chr6 42736950 42736977 -146542577 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 622 200 64 0 chr6 42736977 42737102 -146542452 - AluJo/FRAM SINE Alu -1 311 179 1263 167 5 0 chr6 42737102 42737300 -146542254 + AluJb SINE Alu 109 307 -5 1395 103 0 0 chr6 42737336 42737510 -146542044 - AluSq SINE Alu -20 293 120 1188 163 5 15 chr6 42737520 42737722 -146541832 - AluSg/x SINE Alu 0 312 113 1490 102 0 15 chr6 42737722 42737927 -146541627 - AluSx SINE Alu -110 202 1 447 290 85 45 chr6 42737930 42738132 -146541422 - L1MC4a LINE L1 -985 6823 6610 207 0 0 0 chr6 42738132 42738155 -146541399 + (TG)n Simple_repeat Simple_repeat 2 24 0 447 290 85 45 chr6 42738155 42738176 -146541378 - L1MC4a LINE L1 -1198 6610 6591 1810 164 13 17 chr6 42738189 42738488 -146541066 - AluJb SINE Alu -14 298 1 2386 85 3 0 chr6 42738508 42738815 -146540739 - AluY SINE Alu -3 308 1 2450 91 0 0 chr6 42738815 42739122 -146540432 - AluSc SINE Alu -2 307 1 2162 99 3 39 chr6 42739125 42739294 -146540260 - AluSq SINE Alu -12 301 128 2287 109 6 0 chr6 42739294 42739605 -146539949 - AluSp SINE Alu 0 313 1 2168 61 0 11 chr6 42739607 42739870 -146539684 - AluY SINE Alu -11 300 41 2162 99 3 39 chr6 42739870 42740009 -146539545 - AluSq SINE Alu -186 127 1 1489 152 51 70 chr6 42740009 42740325 -146539229 - AluJo SINE Alu -2 310 1 1898 149 0 36 chr6 42740328 42740636 -146538918 - AluJo SINE Alu -15 297 1 2261 99 0 7 chr6 42740793 42741086 -146538468 - AluSc SINE Alu -18 291 1 242 250 177 8 chr6 42741098 42741222 -146538332 + MIR SINE MIR 104 248 -14 1970 77 0 0 chr6 42742360 42742595 -146536959 - AluSg SINE Alu -14 296 62 355 323 106 18 chr6 42743265 42743482 -146536072 + MIR SINE MIR 17 252 -10 1081 198 18 18 chr6 42743864 42744091 -146535463 + AluJo SINE Alu 75 301 -11 697 178 7 22 chr6 42744134 42744269 -146535285 - FLAM_C SINE Alu 0 133 1 1754 137 11 32 chr6 42744509 42744793 -146534761 + AluJb SINE Alu 21 298 -14 335 245 98 44 chr6 42744946 42745200 -146534354 - L1ME LINE L1 -660 5506 5243 * 782 121 25 126 chr6 42745197 42745253 -146534301 - L1MB7 LINE L1 -12 6172 6112 894 130 15 0 chr6 42745253 42745384 -146534170 - FLAM_C SINE Alu 0 133 1 782 121 25 126 chr6 42745384 42745525 -146534029 - L1MB7 LINE L1 -72 6112 5995 839 96 0 17 chr6 42745525 42745640 -146533914 - AluSp/q SINE Alu -19 294 182 489 138 46 0 chr6 42745648 42745735 -146533819 - L1MB7 LINE L1 -200 5984 5894 964 157 7 0 chr6 42745735 42745875 -146533679 - FRAM SINE Alu -36 140 1 2216 107 7 7 chr6 42746045 42746354 -146533200 + AluY SINE Alu 1 309 -2 702 246 14 0 chr6 42746376 42746518 -146533036 - AluJ SINE Alu -31 281 138 6857 147 154 38 chr6 42746518 42748032 -146531522 - pTR5 LTR ERV1 -6 2432 743 2294 106 0 10 chr6 42748049 42748351 -146531203 - AluSx SINE Alu -13 299 1 25 0 0 0 chr6 42748351 42748376 -146531178 + AT_rich Low_complexity Low_complexity 1 25 0 985 131 0 0 chr6 42748402 42748532 -146531022 - AluJ SINE Alu -171 141 12 360 261 62 66 chr6 42748539 42748573 -146530981 - L1ME LINE L1 -1108 5038 5005 2273 76 35 0 chr6 42748573 42748862 -146530692 - AluY SINE Alu -12 299 1 360 261 62 66 chr6 42748862 42749034 -146530520 - L1ME LINE L1 -1141 5005 4836 2144 136 3 13 chr6 42749041 42749350 -146530204 - AluSx SINE Alu -6 306 1 656 286 15 20 chr6 42749350 42749541 -146530013 + L2 LINE L2 2878 3069 -244 657 126 0 39 chr6 42749553 42749656 -146529898 + AluJb SINE Alu 5 103 -209 902 94 6 126 chr6 42749674 42749833 -146529721 - AluSq/x SINE Alu -172 140 1 749 184 6 42 chr6 42749835 42750003 -146529551 + L2 LINE L2 3102 3263 -50 618 193 88 0 chr6 42750025 42750139 -146529415 + FLAM_A SINE Alu 1 124 -9 1215 124 0 0 chr6 42750666 42750835 -146528719 - AluSq SINE Alu -11 302 134 2256 113 3 0 chr6 42750835 42751146 -146528408 - AluSp SINE Alu -1 312 1 2372 103 6 3 chr6 42751292 42751603 -146527951 - AluSx SINE Alu 0 312 1 366 168 329 7 chr6 42751606 42751743 -146527811 + MER2 DNA MER2_type 165 345 0 2415 80 0 19 chr6 42752346 42752658 -146526896 - AluY SINE Alu -5 306 1 2339 97 0 0 chr6 42752666 42752965 -146526589 - AluSc SINE Alu -9 300 2 511 220 43 35 chr6 42753157 42753298 -146526256 + LTR16C LTR ERVL 92 233 -258 673 192 112 0 chr6 42753299 42753424 -146526130 + FRAM SINE Alu 1 139 -37 2533 73 3 0 chr6 42753424 42753727 -146525827 - AluSp SINE Alu -9 304 1 2175 91 4 7 chr6 42753728 42754004 -146525550 - AluSx SINE Alu -37 275 1 1823 150 14 7 chr6 42754027 42754314 -146525240 + AluJo SINE Alu 1 289 -23 556 247 134 4 chr6 42754339 42754570 -146524984 + LTR16C LTR ERVL 231 491 0 193 351 0 0 chr6 42754700 42754777 -146524777 - MIR SINE MIR -18 244 168 2671 126 20 48 chr6 42754777 42755015 -146524539 - MSTB LTR MaLR 0 426 204 2330 102 0 7 chr6 42755015 42755310 -146524244 - AluSx SINE Alu -19 293 1 2671 126 20 48 chr6 42755310 42755509 -146524045 - MSTB LTR MaLR -222 204 1 8934 156 44 30 chr6 42755512 42755834 -146523720 - MSTB-int LTR MaLR -3 1648 1332 2061 116 3 0 chr6 42755834 42756153 -146523401 - AluSx SINE Alu 0 320 1 8934 156 44 30 chr6 42756153 42756914 -146522640 - MSTB-int LTR MaLR -319 1332 531 2223 110 3 3 chr6 42756914 42757214 -146522340 + AluSq SINE Alu 1 300 -13 8934 156 44 30 chr6 42757214 42757753 -146521801 - MSTB-int LTR MaLR -1120 531 1 2204 140 27 45 chr6 42757759 42758134 -146521420 - MSTB LTR MaLR -2 424 55 2537 79 0 0 chr6 42758134 42758437 -146521117 - AluSg SINE Alu -5 305 3 2204 140 27 45 chr6 42758437 42758462 -146521092 - MSTB LTR MaLR -371 55 31 249 289 89 11 chr6 42758475 42758565 -146520989 - MIR SINE MIR -88 174 78 1500 18 0 6 chr6 42758570 42758736 -146520818 + AluYa5 SINE Alu 1 165 -146 504 170 10 10 chr6 42758859 42758959 -146520595 + FRAM SINE Alu 64 163 -13 299 145 32 0 chr6 42758988 42759050 -146520504 - L1M LINE L1 -863 5320 5257 2333 78 17 7 chr6 42759199 42759495 -146520059 - AluSp SINE Alu -14 299 1 2231 113 3 16 chr6 42759504 42759813 -146519741 - AluSg SINE Alu 0 310 6 2484 72 0 0 chr6 42760007 42760298 -146519256 - AluSg SINE Alu -19 291 1 240 299 13 13 chr6 42760487 42760564 -146518990 + MLT1J LTR MaLR 137 213 -298 384 184 219 44 chr6 42760581 42760695 -146518859 + MER5A DNA MER1_type 49 182 -7 665 209 20 70 chr6 42760722 42760923 -146518631 + MLT1J LTR MaLR 239 429 -82 1954 174 0 0 chr6 42761563 42761857 -146517697 + AluJb SINE Alu 1 294 -18 2489 87 0 0 chr6 42761868 42762168 -146517386 + AluSc SINE Alu 1 300 -9 1667 142 110 14 chr6 42762223 42762504 -146517050 + AluSg1 SINE Alu 1 308 -1 2226 147 0 0 chr6 42762519 42762831 -146516723 + AluSx SINE Alu 1 312 0 346 298 71 48 chr6 42762853 42763021 -146516533 + L1M4 LINE L1 4243 4414 -1732 2152 125 7 3 chr6 42763021 42763324 -146516230 + AluSq SINE Alu 1 304 -9 401 275 96 62 chr6 42763387 42763417 -146516137 + MIR SINE MIR 79 107 -155 2324 75 0 0 chr6 42763417 42763695 -146515859 - AluSp SINE Alu -18 295 18 401 275 96 62 chr6 42763695 42763842 -146515712 + MIR SINE MIR 107 262 0 1797 152 14 3 chr6 42764947 42765230 -146514324 + AluJo SINE Alu 10 295 -17 1567 172 62 10 chr6 42765914 42766205 -146513349 - AluJb SINE Alu -6 306 1 1506 126 9 0 chr6 42766266 42766489 -146513065 + AluSg/x SINE Alu 83 307 -3 1724 88 4 28 chr6 42766657 42766908 -146512646 + AluY SINE Alu 1 245 -66 961 87 0 0 chr6 42766908 42767035 -146512519 + AluY SINE Alu 177 303 -8 1073 244 106 29 chr6 42768756 42769133 -146510421 + MLT1C LTR MaLR 59 464 -3 207 383 9 0 chr6 42769148 42769263 -146510291 + L2 LINE L2 1918 2033 -1281 206 259 35 0 chr6 42769351 42769409 -146510145 + L2 LINE L2 2188 2247 -1067 2141 103 10 0 chr6 42769523 42769823 -146509731 + AluSx SINE Alu 1 303 -9 2178 125 0 0 chr6 42770134 42770446 -146509108 + AluJb SINE Alu 1 312 0 21 0 0 0 chr6 42770653 42770674 -146508880 + GC_rich Low_complexity Low_complexity 1 21 0 345 238 42 95 chr6 42771959 42772148 -146507406 - MIR3 SINE MIR 0 208 30 4173 188 48 44 chr6 42772159 42773109 -146506445 + LTR13 LTR ERVK 1 954 0 233 282 42 0 chr6 42774082 42774153 -146505401 + L1MC4 LINE L1 7595 7668 -374 2251 86 7 0 chr6 42774160 42774452 -146505102 - AluSc SINE Alu -15 294 1 1266 113 0 0 chr6 42774558 42774735 -146504819 + AluSc SINE Alu 133 309 0 2117 109 0 0 chr6 42775233 42775550 -146504004 + AluSx SINE Alu 1 317 0 2007 161 73 3 chr6 42775556 42775897 -146503657 + MLT1A1 LTR MaLR 1 365 0 1886 161 3 7 chr6 42776077 42776381 -146503173 + AluJo SINE Alu 1 303 -9 198 310 121 9 chr6 42776733 42776849 -146502705 - MIR SINE MIR -1 261 133 194 264 44 11 chr6 42778080 42778171 -146501383 + L2 LINE L2 3152 3245 -68 2365 247 86 47 chr6 42778196 42778792 -146500762 - L2 LINE L2 0 3313 2741 1966 109 0 48 chr6 42778792 42779103 -146500451 + AluSx SINE Alu 1 296 -16 2365 247 86 47 chr6 42779103 42779690 -146499864 - L2 LINE L2 -572 2741 2093 280 273 333 0 chr6 42779740 42779872 -146499682 + MIR SINE MIR 31 206 -56 1366 203 221 6 chr6 42779898 42780247 -146499307 - MER21B LTR ERV1 -123 740 317 189 74 0 0 chr6 42780249 42780276 -146499278 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 980 149 0 6 chr6 42780277 42780422 -146499132 - AluSg/x SINE Alu -33 277 132 1953 89 3 70 chr6 42780422 42780737 -146498817 - AluSx SINE Alu -18 294 1 980 149 0 6 chr6 42780737 42780752 -146498802 - AluSg/x SINE Alu -178 132 118 261 0 0 0 chr6 42780778 42780807 -146498747 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2083 104 0 0 chr6 42780809 42781087 -146498467 - AluSg SINE Alu -28 282 5 666 197 109 49 chr6 42781091 42781274 -146498280 - MER21B LTR ERV1 -575 288 95 409 169 24 24 chr6 42781393 42781476 -146498078 - MER21B LTR ERV1 -778 85 3 855 83 0 0 chr6 42781886 42781994 -146497560 + AluSg1 SINE Alu 1 108 -201 310 339 86 27 chr6 42782107 42782177 -146497377 + MIR SINE MIR 66 130 -132 2217 226 42 22 chr6 42782177 42782727 -146496827 - MER34B LTR ERV1 0 565 5 310 339 86 27 chr6 42782727 42782842 -146496712 + MIR SINE MIR 130 262 0 2252 82 0 3 chr6 42783210 42783504 -146496050 - AluSc SINE Alu -16 293 1 228 239 0 0 chr6 42784914 42784960 -146494594 + MIR SINE MIR 17 62 -200 801 271 29 83 chr6 42784960 42785381 -146494173 - MLT1J LTR MaLR -3 508 111 256 128 0 0 chr6 42785480 42785519 -146494035 + MIR SINE MIR 70 108 -154 233 234 31 0 chr6 42787415 42787479 -146492075 + (CA)n Simple_repeat Simple_repeat 1 66 0 3136 188 46 40 chr6 42787527 42788249 -146491305 + MER21B LTR ERV1 1 726 -137 1788 195 37 81 chr6 42788249 42788573 -146490981 - MER49 LTR ERV1 0 903 566 1461 165 27 0 chr6 42788573 42788834 -146490720 - AluJo SINE Alu -11 301 34 1788 195 37 81 chr6 42788834 42789172 -146490382 - MER49 LTR ERV1 -337 566 1 307 246 109 58 chr6 42789316 42789454 -146490100 + MLT1J LTR MaLR 5 149 -393 863 212 156 71 chr6 42789991 42790317 -146489237 - MLT1J LTR MaLR -152 359 6 407 244 87 9 chr6 42791350 42791465 -146488089 - MIR SINE MIR -116 146 23 2219 104 3 3 chr6 42791643 42791950 -146487604 + AluSq SINE Alu 1 307 -6 342 278 16 48 chr6 42792002 42792128 -146487426 + L2 LINE L2 2915 3036 -236 638 204 53 13 chr6 42792129 42792281 -146487273 + L1ME LINE L1 5540 5697 -469 * 2694 180 75 6 chr6 42792273 42792800 -146486754 - L1M4 LINE L1 -374 5804 5315 2048 125 3 49 chr6 42792800 42793127 -146486427 - AluSx SINE Alu 0 312 1 2694 180 75 6 chr6 42793127 42793593 -146485961 - L1M4 LINE L1 -863 5315 4747 840 309 93 14 chr6 42793645 42793998 -146485556 - MER90 LTR ERV1 -2 573 193 241 309 49 0 chr6 42794264 42794345 -146485209 + MIR3 SINE MIR 114 198 -10 360 0 0 0 chr6 42795194 42795234 -146484320 + (TG)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr6 42795235 42795255 -146484299 + (GA)n Simple_repeat Simple_repeat 1 20 0 440 229 165 58 chr6 42796766 42796954 -146482600 - MER63A DNA MER1_type 0 210 3 564 207 73 33 chr6 42797790 42797940 -146481614 - MLT1J LTR MaLR -163 348 193 2172 116 3 0 chr6 42798651 42798961 -146480593 - AluSx SINE Alu -1 311 1 2302 140 93 20 chr6 42799656 42800055 -146479499 - MSTC LTR MaLR 0 428 1 426 319 26 44 chr6 42800801 42801027 -146478527 + L2 LINE L2 3092 3313 0 198 179 0 0 chr6 42802203 42802259 -146477295 + CT-rich Low_complexity Low_complexity 1 56 0 200 341 0 67 chr6 42802570 42802705 -146476849 + L2 LINE L2 2967 3092 -180 333 190 254 14 chr6 42803068 42803210 -146476344 + MLT1J LTR MaLR 236 411 -100 7386 87 8 21 chr6 42804840 42805912 -146473642 + MER11C LTR ERVK 1 1057 -14 1809 188 108 22 chr6 42807317 42807733 -146471821 - MER66A LTR ERV1 0 478 27 584 280 107 48 chr6 42809290 42809626 -146469928 - L2 LINE L2 0 3313 2958 240 35 0 0 chr6 42812873 42812902 -146466652 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 660 276 81 18 chr6 42813941 42814327 -146465227 - L1ME3A LINE L1 -1 6161 5718 288 351 84 28 chr6 42815026 42815311 -146464243 + L2 LINE L2 1860 2160 -1154 232 308 56 0 chr6 42815925 42816032 -146463522 - LTR33 LTR ERVL -237 284 172 371 105 0 0 chr6 42819573 42819630 -146459924 + L2 LINE L2 3257 3313 0 302 338 117 37 chr6 42820857 42821209 -146458345 - L1ME4a LINE L1 -194 5927 5548 356 289 175 6 chr6 42821697 42821863 -146457691 - L2 LINE L2 0 3313 3120 222 316 29 52 chr6 42827519 42827655 -146451899 - L2 LINE L2 -7 3306 3174 922 150 41 77 chr6 42827672 42827892 -146451662 + REP3 LTR ERV 26 237 -325 191 154 0 19 chr6 42829111 42829163 -146450391 + C-rich Low_complexity Low_complexity 3 53 0 5850 68 17 11 chr6 42831114 42831875 -146447679 - MER4E LTR ERV1 0 766 1 187 357 12 24 chr6 42832553 42832637 -146446917 + L2 LINE L2 3144 3226 -46 318 203 0 0 chr6 42834084 42834143 -146445411 - MIR3 SINE MIR -41 167 109 549 335 45 0 chr6 42834798 42834974 -146444580 - MIR3 SINE MIR -11 197 14 1181 130 0 0 chr6 42835816 42835985 -146443569 - AluSc SINE Alu -13 296 128 236 294 160 17 chr6 42836792 42836911 -146442643 + MIR3 SINE MIR 2 137 -71 2772 150 14 0 chr6 42838102 42838523 -146441031 - MER1A DNA MER1_type -102 427 1 2178 89 0 0 chr6 42839243 42839525 -146440029 + AluSx SINE Alu 1 282 -30 297 68 0 0 chr6 42839525 42839569 -146439985 + (CTAAA)n Simple_repeat Simple_repeat 3 46 0 867 88 0 16 chr6 42840213 42840338 -146439216 - AluSg/x SINE Alu -14 296 174 4772 42 24 2 chr6 42841078 42841656 -146437898 - LTR10C LTR ERV1 0 591 1 203 120 13 67 chr6 42841876 42841951 -146437603 + (GGGGA)n Simple_repeat Simple_repeat 4 74 0 1477 175 39 111 chr6 42841983 42842468 -146437086 - LTR7 LTR ERV1 0 450 1 228 313 172 30 chr6 42842767 42842901 -146436653 + MIR3 SINE MIR 36 188 -20 265 330 0 22 chr6 42846090 42846181 -146433373 - L2 LINE L2 -1 3312 3224 393 86 0 0 chr6 42847233 42847291 -146432263 + (CA)n Simple_repeat Simple_repeat 2 59 0 189 0 0 0 chr6 42847415 42847436 -146432118 + (CA)n Simple_repeat Simple_repeat 2 22 0 234 250 167 0 chr6 42848077 42848149 -146431405 + MIR SINE MIR 84 167 -95 4974 80 22 1 chr6 42848185 42848832 -146430722 - PABL_A LTR ERV1 0 660 1 346 228 70 18 chr6 42850391 42850505 -146429049 - MIR3 SINE MIR -2 206 87 213 211 0 19 chr6 42851225 42851277 -146428277 + G-rich Low_complexity Low_complexity 4 54 0 181 119 48 0 chr6 42852117 42852159 -146427395 + CT-rich Low_complexity Low_complexity 4 47 0 186 133 0 0 chr6 42852985 42853015 -146426539 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 546 167 0 0 chr6 42853440 42853530 -146426024 - AluJ/FRAM SINE Alu -6 306 217 * 631 171 103 0 chr6 42853528 42853645 -146425909 - AluJo/FLAM SINE Alu -182 130 2 2300 84 0 7 chr6 42854035 42854343 -146425211 - AluSg SINE Alu 0 310 5 422 318 169 38 chr6 42854350 42854746 -146424808 + LTR67 LTR ERVL 108 555 -2 188 244 0 0 chr6 42854769 42854810 -146424744 - MIR SINE MIR -159 103 63 2265 109 39 8 chr6 42855657 42856016 -146423538 + THE1C LTR MaLR 6 375 0 292 273 36 57 chr6 42856380 42856574 -146422980 - MER112 DNA MER1_type -32 228 39 182 193 18 0 chr6 42856783 42856840 -146422714 + (CA)n Simple_repeat Simple_repeat 2 59 0 3722 189 160 59 chr6 42856893 42857820 -146421734 - LTR28 LTR ERV1 0 1020 1 335 244 0 6 chr6 42857824 42858004 -146421550 + (CA)n Simple_repeat Simple_repeat 1 179 0 235 216 0 0 chr6 42858016 42858067 -146421487 + (CA)n Simple_repeat Simple_repeat 1 51 0 283 365 21 7 chr6 42859404 42859549 -146420005 + MLT1K LTR MaLR 134 280 -308 369 250 69 62 chr6 42859730 42859874 -146419680 - MIR SINE MIR -10 252 108 314 316 40 46 chr6 42860667 42860841 -146418713 + LTR67 LTR ERVL 122 294 -263 284 301 66 24 chr6 42860991 42861157 -146418397 + LTR67 LTR ERVL 383 555 -2 399 290 82 27 chr6 42861437 42861620 -146417934 - LTR67 LTR ERVL -11 546 354 411 312 57 6 chr6 42862088 42862245 -146417309 - LTR67 LTR ERVL -35 522 358 317 319 83 38 chr6 42862375 42862532 -146417022 - LTR67 LTR ERVL -390 167 4 197 284 15 15 chr6 42862667 42862734 -146416820 + L2 LINE L2 3205 3271 -1 452 335 76 10 chr6 42862966 42863163 -146416391 + MIR SINE MIR 24 233 -29 448 279 145 12 chr6 42863194 42863366 -146416188 - MIR SINE MIR -39 223 29 255 279 25 0 chr6 42863575 42863654 -146415900 - L2 LINE L2 -182 3090 3010 694 221 19 77 chr6 42863666 42863874 -146415680 - L1ME1 LINE L1 -5 6161 5966 21 57 0 0 chr6 42863941 42863976 -146415578 + AT_rich Low_complexity Low_complexity 1 35 0 204 301 41 0 chr6 42866325 42866398 -146413156 + MIR3 SINE MIR 104 179 -29 207 0 0 0 chr6 42867940 42867963 -146411591 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2104 99 0 3 chr6 42867965 42868248 -146411306 - AluSx SINE Alu -30 282 1 626 201 67 27 chr6 42868249 42868398 -146411156 - MIR SINE MIR -97 165 11 570 304 110 13 chr6 42868412 42868639 -146410915 - MIR SINE MIR -1 261 13 2090 127 10 16 chr6 42869332 42869646 -146409908 - AluSx SINE Alu 0 312 1 270 258 0 0 chr6 42870686 42870752 -146408802 - L2 LINE L2 -330 2983 2918 287 327 91 0 chr6 42871802 42871912 -146407642 - MIR3 SINE MIR -80 128 9 295 282 12 12 chr6 42872247 42872332 -146407222 - MIR SINE MIR -149 113 29 309 242 178 37 chr6 42872391 42872592 -146406962 - MIR3 SINE MIR -3 205 3 236 365 56 47 chr6 42872742 42872956 -146406598 + MIR SINE MIR 41 256 -6 215 235 103 0 chr6 42873858 42873926 -146405628 - L2 LINE L2 -48 3224 3150 523 244 47 0 chr6 42874098 42874225 -146405329 - MIR3 SINE MIR -25 183 51 1978 93 97 4 chr6 42874604 42874882 -146404672 - AluSx SINE Alu -8 304 1 497 302 13 25 chr6 42874890 42875049 -146404505 + MER5A DNA MER1_type 5 161 -28 3112 236 35 8 chr6 42875076 42876074 -146403480 - L1ME3A LINE L1 -24 6146 5121 381 186 172 48 chr6 42876899 42877044 -146402510 + MER103 DNA DNA 3 165 -1 229 281 0 62 chr6 42877438 42877534 -146402020 + GA-rich Low_complexity Low_complexity 5 94 0 473 232 77 41 chr6 42877534 42877641 -146401913 - LTR33 LTR ERVL -17 504 385 2117 129 3 0 chr6 42877641 42877943 -146401611 + AluSq SINE Alu 1 303 -10 473 232 77 41 chr6 42877943 42878029 -146401525 - LTR33 LTR ERVL -136 385 304 2191 150 36 22 chr6 42878033 42878392 -146401162 - THE1B LTR MaLR 0 364 1 295 186 0 0 chr6 42878470 42878529 -146401025 - LTR33 LTR ERVL -346 175 117 299 269 21 21 chr6 42879855 42879948 -146399606 - L2 LINE L2 -174 3098 3006 217 220 85 0 chr6 42880105 42880164 -146399390 - L2 LINE L2 -217 3055 2992 212 329 66 0 chr6 42881180 42881256 -146398298 - MIR SINE MIR -123 139 59 1127 223 129 59 chr6 42884479 42884951 -146394603 + MLT1D LTR MaLR 1 505 0 761 259 35 24 chr6 42884962 42885217 -146394337 + MLT1K LTR MaLR 330 587 -1 238 192 103 26 chr6 42885224 42885302 -146394252 + L1ME LINE L1 5581 5664 -457 307 281 246 0 chr6 42885304 42885418 -146394136 + L1ME LINE L1 5688 5829 -292 482 51 0 0 chr6 42885548 42885607 -146393947 - Alu SINE Alu -19 290 232 589 350 98 66 chr6 42885667 42886163 -146393391 - L1MC4a LINE L1 -1744 6064 5535 1968 87 11 35 chr6 42886163 42886449 -146393105 + AluSc SINE Alu 1 279 -30 589 350 98 66 chr6 42886449 42886696 -146392858 - L1MC4a LINE L1 -2273 5535 5297 336 265 43 17 chr6 42886886 42887003 -146392551 + MLT1K LTR MaLR 180 299 -289 352 268 138 0 chr6 42887933 42888071 -146391483 - MIR3 SINE MIR -22 186 30 203 343 110 20 chr6 42888260 42888406 -146391148 - L2 LINE L2 -86 3186 3028 10055 25 3 171 chr6 42888600 42890265 -146389289 + SVA Other Other 1 1386 0 260 333 0 0 chr6 42890347 42890428 -146389126 + (CA)n Simple_repeat Simple_repeat 1 81 0 203 0 37 0 chr6 42890462 42890489 -146389065 + (CTCTG)n Simple_repeat Simple_repeat 5 32 0 535 300 99 0 chr6 42890835 42891088 -146388466 - LTR16A LTR ERVL -7 443 166 646 229 35 6 chr6 42891858 42892028 -146387526 + MER104 DNA Tc2 1 175 -5 846 304 162 8 chr6 42893673 42894340 -146385214 - L2 LINE L2 -71 3242 2484 877 237 42 31 chr6 42894341 42894829 -146384725 - MLT1H1 LTR MaLR -2 593 1 228 280 13 13 chr6 42894835 42894910 -146384644 - L2 LINE L2 -835 2479 2405 262 286 86 0 chr6 42894948 42895053 -146384501 + MIR3 SINE MIR 81 194 -14 248 220 0 0 chr6 42895683 42895733 -146383821 - MER5A DNA MER1_type -114 75 26 341 191 29 0 chr6 42895935 42896003 -146383551 + MIR SINE MIR 80 149 -113 317 262 13 67 chr6 42896014 42896163 -146383391 + G-rich Low_complexity Low_complexity 2 142 0 471 35 0 0 chr6 42896453 42896510 -146383044 + (TTA)n Simple_repeat Simple_repeat 2 58 0 325 326 45 15 chr6 42897249 42897381 -146382173 + L2 LINE L2 2933 3068 -204 710 240 15 31 chr6 42897634 42897830 -146381724 + L2 LINE L2 3109 3301 -12 186 274 0 48 chr6 42898131 42898193 -146381361 - MIR SINE MIR -93 115 57 298 210 319 0 chr6 42898408 42898527 -146381027 - MER5A DNA MER1_type -32 157 1 203 208 21 21 chr6 42898731 42898779 -146380775 - L2 LINE L2 0 3313 3266 198 297 54 27 chr6 42899752 42899826 -146379728 - L3b LINE CR1 -4 1579 1504 296 274 57 47 chr6 42899927 42899965 -146379589 - MIR SINE MIR -60 148 112 2586 156 2 5 chr6 42899965 42900362 -146379192 - MSTD LTR MaLR 0 396 1 296 274 57 47 chr6 42900362 42900429 -146379125 - MIR SINE MIR -96 112 42 222 245 10 59 chr6 42901068 42901170 -146378384 + CT-rich Low_complexity Low_complexity 1 97 0 225 0 0 0 chr6 42902094 42902119 -146377435 + (CA)n Simple_repeat Simple_repeat 2 26 0 582 269 40 24 chr6 42902140 42902389 -146377165 - L1MC5 LINE L1 -95 7866 7614 271 318 47 68 chr6 42902937 42903129 -146376425 + L2 LINE L2 3022 3209 -63 190 339 17 0 chr6 42903288 42903347 -146376207 - L2 LINE L2 0 3272 3213 324 275 30 78 chr6 42903592 42903759 -146375795 - MIR SINE MIR -56 206 48 192 125 0 0 chr6 42905367 42905399 -146374155 + (A)n Simple_repeat Simple_repeat 1 32 0 2342 99 0 0 chr6 42905664 42905976 -146373578 + AluSx SINE Alu 1 312 0 671 252 104 94 chr6 42906057 42906545 -146373009 + LTR33A LTR ERVL 29 521 -2 258 316 13 53 chr6 42906547 42906699 -146372855 + L2 LINE L2 2327 2472 -842 28 0 0 0 chr6 42909080 42909108 -146370446 + GC_rich Low_complexity Low_complexity 1 28 0 8091 49 9 0 chr6 42911283 42912243 -146367311 + LTR5 LTR ERVK 1 969 0 368 354 13 6 chr6 42914113 42914271 -146365283 - L3 LINE CR1 -777 800 642 22 0 0 0 chr6 42915486 42915508 -146364046 + AT_rich Low_complexity Low_complexity 1 22 0 648 242 79 6 chr6 42915511 42915676 -146363878 + MIR SINE MIR 29 205 -57 1013 211 106 3 chr6 42915721 42916005 -146363549 - MER58B DNA MER1_type -3 338 26 1631 173 20 7 chr6 42916188 42916483 -146363071 - AluJo SINE Alu -13 299 1 333 247 65 0 chr6 42917335 42917412 -146362142 + MIR SINE MIR 98 179 -83 2269 103 0 0 chr6 42918605 42918907 -146360647 + AluSg SINE Alu 9 310 0 225 296 144 8 chr6 42920845 42920970 -146358584 - MIR3 SINE MIR -30 178 37 578 227 23 0 chr6 42923362 42923490 -146356064 - L2 LINE L2 -257 3056 2926 2168 270 88 44 chr6 42923819 42924984 -146354570 - L2 LINE L2 0 3313 2093 204 256 139 0 chr6 42924978 42925064 -146354490 - MIR SINE MIR -77 131 34 * 288 276 31 51 chr6 42925375 42925473 -146354081 - MIR3 SINE MIR -3 205 110 888 230 46 65 chr6 42925809 42926028 -146353526 + MIR SINE MIR 7 222 -40 1910 19 0 0 chr6 42926028 42926243 -146353311 + AluY SINE Alu 85 299 -12 888 230 46 65 chr6 42926243 42926284 -146353270 + MIR SINE MIR 222 262 0 206 217 133 33 chr6 42927167 42927227 -146352327 - MIR SINE MIR -124 138 73 320 272 233 7 chr6 42927625 42927814 -146351740 - MIR SINE MIR 0 262 26 427 283 196 5 chr6 42932126 42932310 -146347244 - MIR SINE MIR -32 230 12 224 276 11 69 chr6 42932704 42932791 -146346763 - L2 LINE L2 0 3272 3191 261 0 0 0 chr6 42932840 42932869 -146346685 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr6 42933050 42933078 -146346476 + GC_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 42933299 42933329 -146346225 + GC_rich Low_complexity Low_complexity 1 30 0 373 280 70 57 chr6 42935114 42935271 -146344283 - MIR SINE MIR -63 145 6 558 227 182 0 chr6 42939033 42939187 -146340367 + MER5A DNA MER1_type 8 189 0 252 315 78 98 chr6 42939395 42939690 -146339864 - L2 LINE L2 -32 3240 2952 389 249 21 0 chr6 42941573 42941666 -146337888 - MIR3 SINE MIR -38 170 75 295 298 32 16 chr6 42945784 42945908 -146333646 - MLT1L LTR MaLR -324 291 166 498 344 21 27 chr6 42946302 42946488 -146333066 - MIR SINE MIR -2 260 76 1925 148 10 0 chr6 42946588 42946885 -146332669 + AluJo SINE Alu 1 300 -12 252 322 93 0 chr6 42947082 42947200 -146332354 + MIR SINE MIR 55 183 -79 243 0 0 0 chr6 42947205 42947232 -146332322 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 530 328 11 11 chr6 42947237 42947414 -146332140 - L2 LINE L2 -10 3303 3127 2221 114 0 0 chr6 42947473 42947772 -146331782 + AluSx SINE Alu 1 299 -13 2030 88 0 0 chr6 42947772 42948034 -146331520 + AluSg SINE Alu 40 301 -9 317 310 94 8 chr6 42951082 42951254 -146328300 + MIR SINE MIR 1 185 -65 210 216 56 89 chr6 42952776 42952877 -146326677 + MIR SINE MIR 27 124 -95 426 266 0 0 chr6 42952893 42952987 -146326567 + L2 LINE L2 3220 3313 0 1844 141 35 0 chr6 42953028 42953318 -146326236 - AluJb SINE Alu -12 300 1 232 309 40 60 chr6 42954357 42954506 -146325048 + MIR3 SINE MIR 15 160 -48 589 295 131 9 chr6 42954548 42954967 -146324587 + MLT1H1 LTR MaLR 2 556 -39 732 216 7 0 chr6 42954976 42955129 -146324425 - L1MD2 LINE L1 -14 6345 6192 372 43 0 0 chr6 42955170 42955216 -146324338 + (TG)n Simple_repeat Simple_repeat 1 46 0 226 200 22 0 chr6 42955227 42955293 -146324261 + MLT1F1 LTR MaLR 475 567 0 919 266 103 3 chr6 42955883 42956184 -146323370 + MLT1I LTR MaLR 53 383 -26 2304 69 7 0 chr6 42956897 42957186 -146322368 - AluY SINE Alu 0 311 21 180 111 0 0 chr6 42957246 42957273 -146322281 + (TG)n Simple_repeat Simple_repeat 1 27 0 545 279 0 21 chr6 42957370 42957510 -146322044 + L3 LINE CR1 685 821 -756 522 321 189 13 chr6 42958169 42958471 -146321083 + L3 LINE CR1 1221 1575 -2 489 308 137 9 chr6 42959375 42959602 -146319952 + MIR SINE MIR 6 261 -1 436 342 26 45 chr6 42959609 42959875 -146319679 + L3 LINE CR1 1301 1561 -16 2243 106 0 0 chr6 42961379 42961681 -146317873 + AluSc SINE Alu 3 304 -5 2244 97 0 31 chr6 42962301 42962621 -146316933 - AluY SINE Alu -1 310 1 957 277 143 48 chr6 42962653 42962673 -146316881 - HAL1 LINE L1 -5 2502 2485 1238 137 189 12 chr6 42962673 42962921 -146316633 + AluSg1 SINE Alu 1 292 -17 957 277 143 48 chr6 42962921 42963304 -146316250 - HAL1 LINE L1 -22 2485 2139 2157 123 3 0 chr6 42963304 42963614 -146315940 + AluSx SINE Alu 1 311 -1 957 277 143 48 chr6 42963614 42963668 -146315886 - HAL1 LINE L1 -368 2139 2091 1426 122 72 89 chr6 42963668 42963972 -146315582 - AluJb SINE Alu -13 299 1 957 277 143 48 chr6 42963972 42964256 -146315298 - HAL1 LINE L1 -416 2091 1689 349 286 57 64 chr6 42964373 42964513 -146315041 - HAL1 LINE L1 -2317 190 52 256 218 55 0 chr6 42964585 42964640 -146314914 + L2 LINE L2 3215 3272 0 327 247 24 35 chr6 42964731 42964816 -146314738 - HAL1 LINE L1 -319 2188 2105 458 250 33 17 chr6 42965358 42965478 -146314076 + MIR SINE MIR 46 167 -41 215 295 156 0 chr6 42965440 42965562 -146313992 + L2 LINE L2 2520 2660 -654 * 225 234 0 0 chr6 42965603 42965650 -146313904 + MER45 DNA AcHobo 1526 1572 -9 736 278 153 21 chr6 42965731 42966039 -146313515 + L2 LINE L2 2826 3209 -104 2063 123 3 0 chr6 42966039 42966360 -146313194 + AluSp SINE Alu 1 322 0 736 278 153 21 chr6 42966360 42966481 -146313073 + L2 LINE L2 3209 3313 0 252 157 39 0 chr6 42966643 42966694 -146312860 - MER53 DNA DNA -135 54 2 632 209 14 14 chr6 42967235 42967374 -146312180 + MIR SINE MIR 113 251 -11 197 336 48 10 chr6 42967967 42968071 -146311483 + MIR SINE MIR 35 142 -66 1053 0 0 0 chr6 42968077 42968096 -146311458 + AluY SINE Alu 3 19 -293 2304 53 0 3 chr6 42968096 42968378 -146311176 + AluY SINE Alu 3 283 -28 1053 0 0 0 chr6 42968378 42968473 -146311081 + AluY SINE Alu 19 312 0 390 321 78 12 chr6 42968582 42968825 -146310729 + L2 LINE L2 2843 3101 -171 1288 200 95 3 chr6 42968985 42969270 -146310284 + AluJb SINE Alu 1 311 -1 624 253 71 27 chr6 42969270 42969487 -146310067 - MIR SINE MIR -5 257 28 438 323 26 42 chr6 42969497 42969689 -146309865 + MIR3 SINE MIR 13 201 -7 440 276 0 0 chr6 42970491 42970596 -146308958 + MIR SINE MIR 119 223 -39 324 0 0 0 chr6 42970683 42970719 -146308835 + (CA)n Simple_repeat Simple_repeat 2 37 0 357 329 99 58 chr6 42971524 42971837 -146307717 - L2 LINE L2 0 3272 2947 521 280 123 23 chr6 42971846 42972107 -146307447 - L2 LINE L2 -530 2784 2498 405 297 0 0 chr6 42972365 42972466 -146307088 + MIR SINE MIR 123 223 -39 820 180 6 55 chr6 42973708 42973891 -146305663 - AluJb SINE Alu -4 308 135 220 196 59 0 chr6 42975286 42975337 -146304217 + CT-rich Low_complexity Low_complexity 1 54 0 185 317 89 10 chr6 42976311 42976412 -146303142 - MER5A DNA MER1_type -32 157 49 279 192 0 0 chr6 42977841 42977914 -146301640 + (CA)n Simple_repeat Simple_repeat 1 73 0 252 346 19 0 chr6 42980152 42980256 -146299298 + MIR SINE MIR 36 141 -121 2441 60 3 16 chr6 42980387 42980704 -146298850 - AluSp SINE Alu 0 313 1 2172 116 0 13 chr6 42980704 42981014 -146298540 - AluSx SINE Alu -4 308 2 482 206 29 0 chr6 42981071 42981173 -146298381 - MLT1I LTR MaLR 0 409 305 233 234 94 0 chr6 42981180 42981244 -146298310 - MLT1J1 LTR MaLR -139 307 238 304 239 110 9 chr6 42983526 42983635 -146295919 + MIR SINE MIR 23 142 -66 861 228 42 33 chr6 42983661 42983902 -146295652 + MIR SINE MIR 9 251 -11 517 251 70 48 chr6 42985421 42985608 -146293946 - MIR SINE MIR 0 262 72 2215 74 0 3 chr6 42985669 42985972 -146293582 + AluSx SINE Alu 1 302 0 22 35 0 0 chr6 42986150 42986179 -146293375 + AT_rich Low_complexity Low_complexity 1 29 0 1882 143 10 0 chr6 42986210 42986503 -146293051 + AluJb SINE Alu 1 296 -16 182 286 18 0 chr6 42988068 42988124 -146291430 + MER5A DNA MER1_type 61 117 -72 2449 75 0 0 chr6 42988144 42988452 -146291102 - AluSp SINE Alu -5 308 1 734 268 28 9 chr6 42989593 42989806 -146289748 - MIR SINE MIR -32 230 14 204 328 0 0 chr6 42991601 42991659 -146287895 + MIR SINE MIR 64 121 -87 494 200 31 77 chr6 42992284 42992361 -146287193 - LTR33 LTR ERVL -4 517 438 2298 97 0 0 chr6 42992361 42992671 -146286883 + AluSg SINE Alu 1 310 0 494 200 31 77 chr6 42992671 42992788 -146286766 - LTR33 LTR ERVL -83 438 332 726 226 40 20 chr6 42992817 42993016 -146286538 - LTR33 LTR ERVL -308 213 11 186 302 0 0 chr6 42994948 42994991 -146284563 - MIR SINE MIR -112 150 108 2297 67 40 0 chr6 42997114 42997413 -146282141 - AluY SINE Alu 0 311 1 181 0 33 33 chr6 43001029 43001059 -146278495 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 249 139 0 0 chr6 43002425 43002468 -146277086 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 207 270 63 0 chr6 43002468 43002531 -146277023 - L2 LINE L2 -1 3271 3205 264 77 0 0 chr6 43002578 43002617 -146276937 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 185 279 0 0 chr6 43003102 43003145 -146276409 + L2 LINE L2 2600 2642 -672 262 224 35 0 chr6 43003242 43003300 -146276254 - MLT1J2 LTR MaLR -1 449 390 243 118 0 0 chr6 43003331 43003365 -146276189 - MLT1J1 LTR MaLR -127 319 286 239 237 0 17 chr6 43003335 43003394 -146276160 - MLT1J LTR MaLR -130 381 324 * 336 262 47 28 chr6 43003455 43003562 -146275992 - MLT1J1 LTR MaLR -314 132 24 2181 112 3 0 chr6 43004429 43004732 -146274822 + AluSx SINE Alu 4 307 -5 213 204 296 10 chr6 43004947 43005045 -146274509 - L2 LINE L2 -165 3148 3023 951 148 79 30 chr6 43006009 43006212 -146273342 + MIR SINE MIR 13 225 -37 2012 131 3 19 chr6 43006212 43006526 -146273028 + AluJo SINE Alu 1 309 -3 261 304 14 0 chr6 43006576 43006645 -146272909 - MIR SINE MIR -105 157 88 204 222 203 34 chr6 43006648 43006855 -146272699 + L2 LINE L2 2923 3164 -149 925 162 6 52 chr6 43006970 43007081 -146272473 + MER45A DNA AcHobo 1 103 -1478 1444 182 43 7 chr6 43007081 43007361 -146272193 - AluJo SINE Alu -22 290 1 925 162 6 52 chr6 43007361 43007422 -146272132 + MER45A DNA AcHobo 103 165 -13 324 70 0 0 chr6 43007452 43007495 -146272059 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 186 306 69 0 chr6 43007859 43007931 -146271623 - L2 LINE L2 -27 3245 3169 4966 132 37 33 chr6 43008631 43009577 -146269977 + L1MB3 LINE L1 5176 6117 -66 1827 93 43 25 chr6 43009577 43009879 -146269675 + AluSq SINE Alu 1 307 0 913 106 16 0 chr6 43009886 43010009 -146269545 + FLAM_C SINE Alu 1 125 -8 4966 132 37 33 chr6 43010009 43010057 -146269497 + L1MB3 LINE L1 6122 6181 -2 504 223 108 19 chr6 43011002 43011059 -146268495 + MER5B DNA MER1_type 6 57 -121 782 108 46 31 chr6 43011059 43011189 -146268365 + FLAM_C SINE Alu 1 132 -1 504 223 108 19 chr6 43011189 43011288 -146268266 + MER5B DNA MER1_type 57 176 -2 1527 283 127 16 chr6 43011545 43012539 -146267015 - L2 LINE L2 0 3313 2217 267 336 8 49 chr6 43012867 43012989 -146266565 + L2 LINE L2 3156 3272 0 385 307 73 28 chr6 43013881 43014060 -146265494 - MIR SINE MIR -55 207 21 2413 70 0 0 chr6 43017042 43017342 -146262212 + AluY SINE Alu 1 300 -11 257 311 107 8 chr6 43018235 43018357 -146261197 - MIR SINE MIR -2 260 127 1449 177 113 11 chr6 43018363 43018725 -146260829 + L1MC4 LINE L1 7545 7943 -99 315 308 13 0 chr6 43018753 43018831 -146260723 - MIR SINE MIR -149 113 35 1644 91 5 5 chr6 43018942 43019162 -146260392 + AluSg SINE Alu 34 253 -57 2170 117 0 3 chr6 43020063 43020362 -146259192 + AluSx SINE Alu 1 298 -14 402 169 24 0 chr6 43021550 43021633 -146257921 + MER5A DNA MER1_type 12 96 -93 1223 139 22 45 chr6 43023538 43023761 -146255793 + MER20 DNA MER1_type 2 219 0 429 280 23 15 chr6 43023972 43024104 -146255450 - MIR SINE MIR -108 154 22 441 244 43 0 chr6 43024120 43024235 -146255319 + MIR SINE MIR 33 152 -110 316 234 39 0 chr6 43025552 43025629 -146253925 - Charlie4 DNA MER1_type -64 1897 1818 188 275 325 6 chr6 43030810 43030970 -146248584 + L2 LINE L2 3012 3222 -50 1025 248 40 4 chr6 43031705 43031955 -146247599 - MIR SINE MIR 0 262 4 454 302 101 0 chr6 43032577 43032716 -146246838 - MER91B DNA MER1_type -37 153 1 207 222 20 78 chr6 43035680 43035833 -146243721 + (CA)n Simple_repeat Simple_repeat 2 145 0 355 225 90 27 chr6 43038516 43038627 -146240927 + MIR SINE MIR 36 153 -109 261 133 0 0 chr6 43040007 43040052 -146239502 - MER91B DNA MER1_type -151 45 1 2122 112 0 3 chr6 43040188 43040483 -146239071 + AluSx SINE Alu 1 294 -18 885 282 107 25 chr6 43040758 43041152 -146238402 - ERVL LTR ERVL -3887 1877 1452 436 151 43 11 chr6 43041154 43041247 -146238307 + MLT1F1 LTR MaLR 472 567 0 2464 63 3 0 chr6 43041251 43041554 -146238000 + AluY SINE Alu 1 304 -7 226 261 23 0 chr6 43041562 43041650 -146237904 - L1MC4a LINE L1 -1807 6001 5912 193 250 0 0 chr6 43042723 43042767 -146236787 + L2 LINE L2 3003 3046 -226 305 248 110 55 chr6 43043066 43043175 -146236379 - L2 LINE L2 -5 3308 3194 189 290 97 0 chr6 43043181 43043243 -146236311 + L2 LINE L2 3203 3270 -2 193 325 34 26 chr6 43045687 43045804 -146233750 + L2 LINE L2 2947 3064 -208 423 310 93 31 chr6 43045917 43046143 -146233411 + MIR SINE MIR 4 243 -19 2203 112 0 13 chr6 43046927 43047230 -146232324 - AluSx SINE Alu -13 299 1 1353 261 74 5 chr6 43047273 43047694 -146231860 + Charlie4a DNA MER1_type 17 466 -42 498 287 48 0 chr6 43048353 43048542 -146231012 + MIR3 SINE MIR 15 212 -50 306 203 45 135 chr6 43049534 43049667 -146229887 + MIR3 SINE MIR 39 159 -49 * 656 188 8 0 chr6 43049664 43049781 -146229773 - MER5A DNA MER1_type -11 178 61 746 143 76 0 chr6 43049814 43049933 -146229621 - FLAM_C SINE Alu -5 128 1 341 164 134 0 chr6 43049933 43050000 -146229554 - MER5A DNA MER1_type -113 76 1 197 254 70 0 chr6 43050491 43050562 -146228992 - L2 LINE L2 -223 3049 2974 214 311 0 29 chr6 43052293 43052396 -146227158 + G-rich Low_complexity Low_complexity 2 101 0 836 258 24 0 chr6 43052516 43052725 -146226829 + MIR SINE MIR 28 241 -21 1117 141 0 0 chr6 43052762 43052925 -146226629 - AluSg/x SINE Alu -19 291 129 195 341 23 11 chr6 43053507 43053595 -146225959 + L2 LINE L2 3153 3241 -31 419 271 24 77 chr6 43054736 43054818 -146224736 + L2 LINE L2 3152 3222 -91 537 185 311 0 chr6 43054818 43054953 -146224601 - MER45A DNA AcHobo -1 177 1 419 271 24 77 chr6 43054953 43055040 -146224514 + L2 LINE L2 3222 3312 -1 276 290 187 36 chr6 43055670 43056060 -146223494 + L1MC4 LINE L1 7594 8042 0 674 289 65 9 chr6 43056077 43056309 -146223245 + MIR SINE MIR 18 262 0 464 276 21 57 chr6 43056793 43056985 -146222569 + MIR SINE MIR 8 192 -70 213 135 27 0 chr6 43057353 43057390 -146222164 + (CCCCAG)n Simple_repeat Simple_repeat 5 42 0 338 215 13 0 chr6 43057906 43057985 -146221569 + MER46C DNA MER2_type 258 337 -1 253 343 110 7 chr6 43057985 43058131 -146221423 - MIR SINE MIR -61 201 41 346 306 8 40 chr6 43058143 43058267 -146221287 - L3 LINE CR1 -7 1570 1451 383 155 28 0 chr6 43059118 43059189 -146220365 + L2 LINE L2 3229 3301 -12 500 196 53 38 chr6 43060338 43060350 -146219204 + MIR SINE MIR 52 62 -200 2018 124 19 3 chr6 43060350 43060657 -146218897 - AluSq SINE Alu -1 312 1 500 196 53 38 chr6 43060657 43060777 -146218777 + MIR SINE MIR 62 186 -76 756 275 69 0 chr6 43060798 43061016 -146218538 - MIR SINE MIR -17 245 13 2098 98 0 7 chr6 43061399 43061723 -146217831 - AluSx SINE Alu 0 322 1 933 223 28 9 chr6 43063931 43064142 -146215412 - MIR SINE MIR -43 219 5 276 130 0 0 chr6 43064508 43064554 -146215000 + (CA)n Simple_repeat Simple_repeat 1 46 0 269 275 23 76 chr6 43065795 43065926 -146213628 + MIR3 SINE MIR 37 160 -48 443 283 241 0 chr6 43065983 43066128 -146213426 + MER91A DNA MER1_type 9 188 -8 870 142 0 15 chr6 43066220 43066354 -146213200 - AluJo SINE Alu -176 136 5 922 197 121 76 chr6 43066915 43067295 -146212259 + LTR16A1 LTR ERVL 61 457 0 262 270 0 0 chr6 43067514 43067577 -146211977 + L3 LINE CR1 1396 1458 -119 2275 116 0 0 chr6 43068072 43068383 -146211171 - AluSx SINE Alu 0 312 2 676 295 78 0 chr6 43068650 43068908 -146210646 + MER20B DNA MER1_type 155 432 -351 968 125 0 0 chr6 43068955 43069091 -146210463 + FLAM_C SINE Alu 1 136 -7 40 0 0 20 chr6 43069128 43069162 -146210392 + AT_rich Low_complexity Low_complexity 1 35 -15 1638 188 3 3 chr6 43069162 43069454 -146210100 + AluJo SINE Alu 1 292 -20 40 0 0 20 chr6 43069454 43069470 -146210084 + AT_rich Low_complexity Low_complexity 35 50 0 2269 89 0 16 chr6 43069606 43069910 -146209644 + AluSg SINE Alu 1 299 -11 208 298 61 61 chr6 43069920 43070034 -146209520 + L2 LINE L2 3145 3258 -55 232 364 34 0 chr6 43070940 43071058 -146208496 + L1MEd LINE L1 939 1060 -5470 2559 43 0 3 chr6 43071069 43071374 -146208180 - AluY SINE Alu -6 305 2 638 317 102 36 chr6 43071382 43071745 -146207809 + L1MEd LINE L1 1021 1407 -5133 271 301 97 0 chr6 43072492 43072585 -146206969 - MER5B DNA MER1_type -38 140 39 2211 113 3 0 chr6 43072845 43073154 -146206400 + AluSp SINE Alu 1 310 -3 2174 94 0 20 chr6 43073167 43073465 -146206089 + AluSg1 SINE Alu 1 292 -17 1633 133 72 14 chr6 43073478 43073757 -146205797 + AluJb SINE Alu 3 297 -15 455 246 107 16 chr6 43073894 43074004 -146205550 + HAL1 LINE L1 2187 2286 -221 2147 139 0 0 chr6 43074004 43074313 -146205241 + AluJb SINE Alu 1 309 -3 455 246 107 16 chr6 43074313 43074389 -146205165 + HAL1 LINE L1 2286 2390 -117 261 357 94 6 chr6 43074390 43074561 -146204993 + L1MB3 LINE L1 5522 5707 -2101 2395 179 22 22 chr6 43074569 43075033 -146204521 + L1MB3 LINE L1 5718 6181 -2 1617 189 20 17 chr6 43075045 43075342 -146204212 + AluJb SINE Alu 2 299 -13 243 0 0 0 chr6 43076585 43076612 -146202942 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 618 212 57 61 chr6 43076693 43076938 -146202616 + MER112 DNA MER1_type 17 260 0 192 383 35 26 chr6 43076950 43077065 -146202489 - MIR SINE MIR -73 135 20 259 238 48 0 chr6 43077201 43077264 -146202290 - L2 LINE L2 0 3272 3207 315 193 172 110 chr6 43077907 43077940 -146201614 + MIR SINE MIR 9 39 -223 2335 86 0 3 chr6 43077940 43078242 -146201312 - AluSc SINE Alu -8 301 1 315 193 172 110 chr6 43078242 43078353 -146201201 + MIR SINE MIR 39 162 -100 302 316 97 0 chr6 43078557 43078671 -146200883 - L1MC4 LINE L1 -4 8038 7914 2161 125 0 10 chr6 43078689 43079002 -146200552 + AluSx SINE Alu 1 310 -2 1747 149 7 30 chr6 43079014 43079315 -146200239 + AluJb SINE Alu 3 296 -16 254 296 24 40 chr6 43079526 43079651 -146199903 - L1ME LINE L1 -359 5811 5689 476 253 104 42 chr6 43079677 43079754 -146199800 - MER112 DNA MER1_type 0 260 189 2450 63 0 0 chr6 43079754 43080055 -146199499 - AluY SINE Alu -10 301 1 476 253 104 42 chr6 43080055 43080218 -146199336 - MER112 DNA MER1_type -71 189 5 436 325 6 6 chr6 43080221 43080381 -146199173 - L1ME LINE L1 -508 5656 5497 180 0 0 0 chr6 43080505 43080525 -146199029 + (CACTT)n Simple_repeat Simple_repeat 1 20 0 1012 123 0 0 chr6 43080567 43080705 -146198849 + AluSq/x SINE Alu 1 138 -174 2234 76 0 7 chr6 43080707 43081028 -146198526 + AluY SINE Alu 7 311 0 2419 83 0 0 chr6 43081031 43081333 -146198221 + AluSq SINE Alu 1 302 -11 2102 114 6 16 chr6 43081790 43082105 -146197449 - AluSq SINE Alu -1 312 1 207 272 109 61 chr6 43082412 43082559 -146196995 + MIR SINE MIR 54 207 -1 270 0 0 0 chr6 43082926 43082956 -146196598 + (CA)n Simple_repeat Simple_repeat 2 31 0 2071 104 33 3 chr6 43083483 43083782 -146195772 + AluSg1 SINE Alu 1 308 -1 396 161 0 0 chr6 43083785 43083866 -146195688 + GA-rich Low_complexity Low_complexity 4 84 0 216 374 149 0 chr6 43083874 43083981 -146195573 + MIR SINE MIR 26 148 -114 980 249 36 22 chr6 43083987 43084059 -146195495 - LTR33 LTR ERVL 0 521 452 2098 119 0 3 chr6 43084059 43084354 -146195200 + AluSx SINE Alu 6 299 -13 980 249 36 22 chr6 43084354 43084731 -146194823 - LTR33 LTR ERVL -69 452 1 445 314 178 47 chr6 43086101 43086815 -146192739 - L2 LINE L2 0 3313 2481 1203 214 34 7 chr6 43087234 43087529 -146192025 - L1MC2 LINE L1 -9 6335 6033 272 247 14 14 chr6 43087657 43087730 -146191824 - MIR SINE MIR -131 131 59 264 278 48 55 chr6 43087737 43087998 -146191556 - LTR16C LTR ERVL -4 487 158 208 271 17 0 chr6 43088121 43088180 -146191374 - L2 LINE L2 0 3272 3213 322 205 26 26 chr6 43088826 43088904 -146190650 - MIR SINE MIR -109 153 76 184 360 40 0 chr6 43088906 43088981 -146190573 - MIR SINE MIR -112 150 73 468 290 43 7 chr6 43088983 43089121 -146190433 - MIR SINE MIR -115 147 5 32 0 0 0 chr6 43089703 43089735 -146189819 + AT_rich Low_complexity Low_complexity 1 32 0 537 223 123 0 chr6 43089863 43089993 -146189561 - MIR SINE MIR 0 262 117 218 270 32 0 chr6 43090013 43090076 -146189478 + L2 LINE L2 2979 3043 -229 277 228 79 94 chr6 43090155 43090191 -146189363 + MIR SINE MIR 46 81 -181 2281 97 0 0 chr6 43090191 43090490 -146189064 - AluSg SINE Alu -11 299 1 277 228 79 94 chr6 43090490 43090580 -146188974 + MIR SINE MIR 81 170 -92 2006 144 27 47 chr6 43090597 43090622 -146188932 + MSTB LTR MaLR 31 55 -371 2368 83 0 0 chr6 43090622 43090923 -146188631 + AluSg SINE Alu 3 303 -7 2006 144 27 47 chr6 43090923 43091299 -146188255 + MSTB LTR MaLR 55 424 -2 9080 160 42 28 chr6 43091305 43091844 -146187710 + MSTB-int LTR MaLR 1 531 -1120 2043 108 20 3 chr6 43091844 43092139 -146187415 - AluSq SINE Alu -13 300 1 9080 160 42 28 chr6 43092139 43092900 -146186654 + MSTB-int LTR MaLR 531 1332 -319 1985 116 3 0 chr6 43092900 43093219 -146186335 + AluSx SINE Alu 1 320 0 9080 160 42 28 chr6 43093219 43093541 -146186013 + MSTB-int LTR MaLR 1332 1648 -3 2676 126 20 48 chr6 43093544 43093743 -146185811 + MSTB LTR MaLR 1 204 -222 2227 102 0 7 chr6 43093743 43094038 -146185516 + AluSx SINE Alu 1 293 -19 2676 126 20 48 chr6 43094038 43094276 -146185278 + MSTB LTR MaLR 204 426 0 213 351 0 0 chr6 43094276 43094353 -146185201 + MIR SINE MIR 168 244 -18 569 247 134 4 chr6 43094483 43094714 -146184840 - LTR16C LTR ERVL 0 491 231 1742 150 14 7 chr6 43094739 43095026 -146184528 - AluJo SINE Alu -23 289 1 2080 91 4 7 chr6 43095049 43095325 -146184229 + AluSx SINE Alu 1 275 -37 2415 75 3 0 chr6 43095326 43095631 -146183923 + AluSp SINE Alu 1 306 -7 656 187 114 0 chr6 43095631 43095754 -146183800 - FRAM SINE Alu -39 137 1 492 220 43 35 chr6 43095755 43095896 -146183658 - LTR16C LTR ERVL -258 233 92 2243 97 0 0 chr6 43096088 43096387 -146183167 + AluSc SINE Alu 2 300 -9 2314 80 0 19 chr6 43096395 43096707 -146182847 + AluY SINE Alu 1 306 -5 286 185 8 12 chr6 43097310 43097447 -146182107 - MER2 DNA MER2_type 0 345 165 2265 103 6 3 chr6 43097450 43097761 -146181793 + AluSx SINE Alu 1 312 0 2165 113 3 0 chr6 43097906 43098217 -146181337 + AluSp SINE Alu 1 312 -1 1178 118 0 0 chr6 43098217 43098386 -146181168 + AluSq SINE Alu 134 302 -11 680 230 9 59 chr6 43098871 43098902 -146180652 - L2 LINE L2 -1 3312 3281 600 192 80 16 chr6 43098902 43099027 -146180527 - FLAM_A SINE Alu 0 133 1 680 230 9 59 chr6 43099027 43099217 -146180337 - L2 LINE L2 -32 3281 3102 863 94 6 126 chr6 43099219 43099378 -146180176 + AluSq/x SINE Alu 1 140 -173 660 126 0 39 chr6 43099396 43099499 -146180055 - AluJb SINE Alu -209 103 5 723 261 70 55 chr6 43099512 43099703 -146179851 - L2 LINE L2 -244 3069 2867 2171 109 3 26 chr6 43099703 43100016 -146179538 + AluSx SINE Alu 1 306 -6 723 261 70 55 chr6 43100016 43100165 -146179389 - L2 LINE L2 -446 2867 2722 414 293 49 76 chr6 43100195 43100283 -146179271 - MIR SINE MIR -21 241 152 2083 101 3 21 chr6 43100283 43100606 -146178948 + AluSp SINE Alu 1 318 0 414 293 49 76 chr6 43100606 43100620 -146178934 - MIR SINE MIR -110 152 139 2271 85 6 16 chr6 43100620 43100936 -146178618 + AluSp SINE Alu 1 313 0 414 293 49 76 chr6 43100936 43101056 -146178498 - MIR SINE MIR -123 139 23 1358 139 33 19 chr6 43101113 43101328 -146178226 - MER20 DNA MER1_type 0 219 2 220 388 0 10 chr6 43101479 43101582 -146177972 + L2 LINE L2 2753 2854 -460 2018 84 3 51 chr6 43102027 43102173 -146177381 + AluSx SINE Alu 1 152 -205 1781 33 9 0 chr6 43102173 43102383 -146177171 + AluY SINE Alu 92 303 -8 1938 119 0 44 chr6 43102383 43102702 -146176852 + AluSc SINE Alu 1 305 -4 2018 84 3 51 chr6 43102702 43102925 -146176629 + AluSx SINE Alu 150 357 0 307 274 76 79 chr6 43103032 43103309 -146176245 + L2 LINE L2 2939 3214 -58 738 271 213 6 chr6 43103789 43103920 -146175634 + L2 LINE L2 2615 2718 -595 758 121 179 0 chr6 43103920 43104060 -146175494 + FRAM SINE Alu 1 165 -1 738 271 213 6 chr6 43104060 43104482 -146175072 + L2 LINE L2 2718 3296 -17 2136 102 3 7 chr6 43104493 43104788 -146174766 - AluSq SINE Alu -19 294 1 299 267 71 52 chr6 43104810 43104978 -146174576 - MIR SINE MIR -58 150 1 222 113 14 113 chr6 43105300 43105371 -146174183 + (CAGAGA)n Simple_repeat Simple_repeat 2 65 0 347 219 119 46 chr6 43105462 43105613 -146173941 - MER91A DNA MER1_type 0 196 35 201 281 0 0 chr6 43106104 43106168 -146173386 - MIR SINE MIR -62 146 83 363 80 0 0 chr6 43108176 43108226 -146171328 + L1PA5 LINE L1 6105 6154 0 2029 145 0 0 chr6 43108664 43108961 -146170593 - AluJb SINE Alu -15 297 1 199 294 219 8 chr6 43109080 43109199 -146170355 - MIR3 SINE MIR -56 152 9 546 301 0 12 chr6 43109459 43109632 -146169922 - MIR3 SINE MIR -7 201 31 279 54 0 0 chr6 43109661 43109698 -146169856 + (TG)n Simple_repeat Simple_repeat 1 37 0 546 233 218 5 chr6 43110378 43110571 -146168983 + MIR SINE MIR 18 251 -11 859 261 23 9 chr6 43111552 43111770 -146167784 - MIR SINE MIR -14 248 28 2396 74 3 0 chr6 43113497 43113807 -146165747 - AluY SINE Alu 0 311 1 2345 91 0 0 chr6 43113807 43114114 -146165440 - AluSc SINE Alu -2 307 1 2065 99 3 39 chr6 43114117 43114286 -146165268 - AluSq SINE Alu -12 301 128 2230 103 6 0 chr6 43114286 43114597 -146164957 - AluSp SINE Alu 0 313 1 2056 61 0 11 chr6 43114599 43114861 -146164693 - AluY SINE Alu -12 299 41 2065 99 3 39 chr6 43114861 43115000 -146164554 - AluSq SINE Alu -186 127 1 1396 151 50 76 chr6 43115000 43115317 -146164237 - AluJo SINE Alu -3 309 1 1818 153 0 36 chr6 43115320 43115628 -146163926 - AluJo SINE Alu -15 297 1 2164 99 0 7 chr6 43115785 43116078 -146163476 - AluSc SINE Alu -18 291 1 267 281 141 8 chr6 43116090 43116218 -146163336 + MIR SINE MIR 104 248 -14 1871 84 0 0 chr6 43117353 43117590 -146161964 - AluSg SINE Alu -12 298 62 391 327 106 18 chr6 43118260 43118477 -146161077 + MIR SINE MIR 17 252 -10 634 109 33 0 chr6 43118855 43118947 -146160607 + AluSg1 SINE Alu 1 95 -214 211 204 0 20 chr6 43119672 43119721 -146159833 + MIR SINE MIR 46 93 -115 394 269 101 13 chr6 43119805 43119954 -146159600 + MIR SINE MIR 29 190 -72 908 69 0 23 chr6 43120021 43120054 -146159500 - AluSp/q SINE Alu 0 331 299 2550 70 0 10 chr6 43120054 43120368 -146159186 - AluY SINE Alu 0 311 1 908 69 0 23 chr6 43120368 43120482 -146159072 - AluSp/q SINE Alu -32 299 187 2426 77 3 10 chr6 43120369 43120668 -146158886 - AluSp SINE Alu -14 299 3 295 250 204 72 chr6 43121823 43121975 -146157579 + MIR SINE MIR 1 172 -90 218 250 0 0 chr6 43124979 43125027 -146154527 - MIR SINE MIR -9 253 206 2283 80 0 51 chr6 43126208 43126520 -146153034 - AluSg SINE Alu -14 296 1 351 179 0 0 chr6 43126574 43126641 -146152913 + (TG)n Simple_repeat Simple_repeat 1 67 0 2275 108 10 3 chr6 43126840 43127146 -146152408 + AluSp SINE Alu 1 308 -5 2218 86 34 0 chr6 43128066 43128357 -146151197 - AluSx SINE Alu -11 301 1 21 0 0 0 chr6 43129944 43129965 -146149589 + AT_rich Low_complexity Low_complexity 1 21 0 979 148 36 61 chr6 43129972 43130168 -146149386 + AluJo SINE Alu 84 274 -38 584 119 0 10 chr6 43130175 43130276 -146149278 + (GGGA)n Simple_repeat Simple_repeat 1 100 0 653 164 112 154 chr6 43130281 43130567 -146148987 + LTR54 LTR ERV1 45 318 -192 885 143 0 0 chr6 43130571 43130697 -146148857 + FLAM_C SINE Alu 9 134 -9 2463 83 3 19 chr6 43130697 43131011 -146148543 + AluSp SINE Alu 1 309 -4 879 148 11 69 chr6 43131033 43131089 -146148465 + LTR54 LTR ERV1 333 391 -119 2256 100 0 36 chr6 43131089 43131390 -146148164 + AluSx SINE Alu 3 292 -20 879 148 11 69 chr6 43131390 43131522 -146148032 + LTR54 LTR ERV1 391 510 0 232 91 0 0 chr6 43131624 43131657 -146147897 - L2 LINE L2 -1 3271 3239 2172 92 14 10 chr6 43131782 43132074 -146147480 - AluSp SINE Alu -19 294 2 726 106 71 0 chr6 43132088 43132201 -146147353 - AluJb SINE Alu -19 293 173 2310 102 6 19 chr6 43132228 43132543 -146147011 + AluSq SINE Alu 1 311 -2 207 254 206 0 chr6 43132577 43132640 -146146914 + MIR SINE MIR 13 88 -174 2141 124 0 3 chr6 43132673 43132971 -146146583 - AluSg SINE Alu -13 297 1 729 192 0 0 chr6 43132977 43133102 -146146452 - FLAM_C SINE Alu -17 126 2 2510 96 0 0 chr6 43133129 43133441 -146146113 + AluSx SINE Alu 1 312 0 640 158 108 0 chr6 43133445 43133565 -146145989 + AluJ SINE Alu 1 133 -169 1951 154 0 19 chr6 43133587 43133720 -146145834 + AluJo SINE Alu 3 137 -175 2177 100 0 43 chr6 43133720 43134057 -146145497 + AluSx SINE Alu 1 324 0 1951 154 0 19 chr6 43134057 43134232 -146145322 + AluJo SINE Alu 137 307 -5 207 308 137 17 chr6 43134243 43134360 -146145194 - MIR SINE MIR -14 248 118 1020 156 17 22 chr6 43134361 43134540 -146145014 + AluJ SINE Alu 134 311 -1 1032 227 50 78 chr6 43134570 43134724 -146144830 - MLT1H LTR MaLR -198 351 194 2457 76 0 7 chr6 43134724 43135028 -146144526 - AluSp SINE Alu -11 302 1 1032 227 50 78 chr6 43135028 43135154 -146144400 - MLT1H LTR MaLR -355 194 81 2402 60 40 3 chr6 43135154 43135453 -146144101 + AluY SINE Alu 2 311 0 1032 227 50 78 chr6 43135453 43135532 -146144022 - MLT1H LTR MaLR -468 81 1 1801 151 10 36 chr6 43135553 43135858 -146143696 - AluJo SINE Alu -15 297 1 2273 89 31 0 chr6 43136001 43136292 -146143262 - AluSx SINE Alu -12 300 1 2075 142 7 0 chr6 43136734 43137022 -146142532 - AluSx SINE Alu -21 291 2 1423 201 37 8 chr6 43137135 43137403 -146142151 - AluJo SINE Alu -24 288 13 2220 106 17 10 chr6 43137431 43137733 -146141821 + AluSx SINE Alu 1 304 -8 2177 86 11 4 chr6 43137826 43138131 -146141423 - AluY SINE Alu 0 308 2 1835 117 36 22 chr6 43138132 43138406 -146141148 - AluSp SINE Alu -35 278 1 766 190 0 25 chr6 43138413 43138571 -146140983 - AluJ SINE Alu -12 290 137 333 61 20 0 chr6 43138571 43138620 -146140934 - AluJ SINE Alu -166 136 87 * 1447 227 34 96 chr6 43138609 43139138 -146140416 + LTR8 LTR ERV1 196 691 0 2415 91 7 0 chr6 43139216 43139525 -146140029 - AluSp SINE Alu -2 311 1 297 224 160 32 chr6 43139528 43139653 -146139901 - MLT1H LTR MaLR -146 403 263 203 51 26 51 chr6 43139797 43139836 -146139718 + (TAAAAA)n Simple_repeat Simple_repeat 2 39 0 1588 149 17 85 chr6 43139838 43139961 -146139593 + AluSx SINE Alu 1 131 -181 425 88 0 15 chr6 43139961 43140029 -146139525 + (TA)n Simple_repeat Simple_repeat 1 67 0 1588 149 17 85 chr6 43140029 43140200 -146139354 + AluSx SINE Alu 131 275 -37 2326 101 7 3 chr6 43140200 43140506 -146139048 - AluSq SINE Alu -5 308 1 2087 83 4 0 chr6 43140664 43140918 -146138636 + AluSp SINE Alu 21 275 -38 1903 110 0 16 chr6 43140998 43141252 -146138302 + AluSq SINE Alu 1 250 -63 207 0 0 0 chr6 43141256 43141279 -146138275 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2304 113 0 3 chr6 43141297 43141598 -146137956 - AluSx SINE Alu -12 300 1 1686 172 17 33 chr6 43141674 43141976 -146137578 + AluJo SINE Alu 1 297 -15 2262 108 0 0 chr6 43142200 43142495 -146137059 - AluSg SINE Alu -15 295 1 2328 92 3 0 chr6 43142570 43142862 -146136692 - AluSc SINE Alu -14 295 3 1852 159 0 3 chr6 43143271 43143554 -146136000 + AluJb SINE Alu 1 282 -30 1772 172 3 7 chr6 43143556 43143846 -146135708 - AluJb SINE Alu -13 299 11 2313 96 0 0 chr6 43143881 43144174 -146135380 + AluSx SINE Alu 1 293 -19 225 0 0 0 chr6 43144290 43144315 -146135239 + (T)n Simple_repeat Simple_repeat 1 25 0 226 189 0 0 chr6 43144472 43144509 -146135045 + AluJo SINE Alu 1 37 -266 1679 127 104 4 chr6 43144509 43144777 -146134777 - AluJb SINE Alu -17 295 1 1505 179 11 11 chr6 43144777 43145050 -146134504 + AluJo SINE Alu 27 299 -13 2207 109 0 40 chr6 43145344 43145666 -146133888 - AluSg SINE Alu -1 309 1 2146 106 6 58 chr6 43145666 43145994 -146133560 - AluSx SINE Alu 0 312 1 956 171 15 68 chr6 43146000 43146159 -146133395 + Tigger3(Golem) DNA MER2_type 2835 2982 -46 2295 116 0 0 chr6 43146159 43146470 -146133084 + AluSx SINE Alu 1 311 -1 956 171 15 68 chr6 43146470 43146515 -146133039 + Tigger3(Golem) DNA MER2_type 2982 3028 0 674 175 19 69 chr6 43146569 43146729 -146132825 + FAM SINE Alu 24 175 -10 1932 142 30 26 chr6 43146899 43147201 -146132353 - AluSx SINE Alu -9 303 1 1536 173 13 33 chr6 43147407 43147713 -146131841 + AluJb SINE Alu 6 305 -7 594 126 202 0 chr6 43147725 43147844 -146131710 - MER7A DNA MER2_type -204 142 2 2291 82 20 10 chr6 43148384 43148676 -146130878 - AluSx SINE Alu -15 297 3 2299 116 0 3 chr6 43149299 43149610 -146129944 + AluSg SINE Alu 1 310 0 1809 180 0 16 chr6 43149625 43149936 -146129618 + AluJo SINE Alu 1 306 -6 1684 40 56 0 chr6 43149947 43150145 -146129409 + AluY SINE Alu 86 294 -17 2330 104 0 25 chr6 43150530 43150848 -146128706 - AluSx SINE Alu -2 310 1 2172 103 24 0 chr6 43151132 43151422 -146128132 + AluSx SINE Alu 1 297 -15 1987 101 57 30 chr6 43151906 43152202 -146127352 - AluSx SINE Alu -8 304 1 311 239 0 14 chr6 43153094 43153165 -146126389 - MER94 DNA DNA 0 134 65 267 297 11 33 chr6 43153174 43153265 -146126289 - MER94 DNA DNA -41 93 5 727 214 0 0 chr6 43153720 43153866 -146125688 + Tigger3(Golem) DNA MER2_type 1 2572 -457 2517 79 0 13 chr6 43153870 43154186 -146125368 - AluSx SINE Alu 0 312 1 1945 144 3 3 chr6 43154222 43154513 -146125041 - AluSx SINE Alu -21 291 1 1741 149 9 72 chr6 43154514 43154682 -146124872 - AluJo SINE Alu -11 301 124 2187 125 0 7 chr6 43154682 43154985 -146124569 - AluSx SINE Alu -11 301 1 195 69 0 0 chr6 43154987 43155016 -146124538 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1996 127 8 0 chr6 43155025 43155293 -146124261 - AluSx SINE Alu -36 276 7 1741 149 9 72 chr6 43155293 43155432 -146124122 - AluJo SINE Alu -197 115 1 374 59 0 0 chr6 43155432 43155483 -146124071 - AluSq/x SINE Alu -167 136 86 1098 231 0 5 chr6 43155483 43155704 -146123850 - AluJo SINE Alu -92 220 1 1902 151 9 35 chr6 43155706 43156023 -146123531 - 7SLRNA srpRNA srpRNA -11 309 1 2319 104 0 3 chr6 43156030 43156328 -146123226 - AluSg SINE Alu -13 297 1 2403 120 112 2 chr6 43156328 43156746 -146122808 + Tigger3(Golem) DNA MER2_type 2563 3026 -3 318 283 175 0 chr6 43157037 43157157 -146122397 - MIR SINE MIR -1 261 121 2247 107 0 3 chr6 43157160 43157450 -146122104 + AluSc SINE Alu 1 289 -20 2548 72 0 0 chr6 43157460 43157766 -146121788 - AluY SINE Alu 0 311 6 455 238 76 86 chr6 43157766 43158047 -146121507 - L1ME4a LINE L1 -1 6120 5843 714 147 0 52 chr6 43158047 43158183 -146121371 - FLAM_A SINE Alu -4 129 1 455 238 76 86 chr6 43158183 43158309 -146121245 - L1ME4a LINE L1 -278 5843 5717 2247 81 0 55 chr6 43158936 43159268 -146120286 - AluSg SINE Alu 0 310 1 387 164 17 103 chr6 43159335 43159451 -146120103 - L2 LINE L2 -20 3293 3188 21 0 0 0 chr6 43159603 43159624 -146119930 + AT_rich Low_complexity Low_complexity 1 21 0 401 119 15 0 chr6 43159628 43159695 -146119859 + AluJ/FLAM SINE Alu 3 70 -242 873 201 6 6 chr6 43159695 43159864 -146119690 + AluJo/FRAM SINE Alu 138 307 -1 2394 98 0 0 chr6 43159864 43160161 -146119393 - AluSq SINE Alu -16 297 1 1629 189 10 3 chr6 43160274 43160565 -146118989 + AluJo SINE Alu 9 301 -11 647 178 7 22 chr6 43160609 43160744 -146118810 - FLAM_C SINE Alu 0 133 1 1758 137 11 32 chr6 43160984 43161268 -146118286 + AluJb SINE Alu 21 298 -14 357 254 94 45 chr6 43161385 43161675 -146117879 - L1M2 LINE L1 -656 5510 5243 * 784 121 25 126 chr6 43161672 43161728 -146117826 - L1MB7 LINE L1 -12 6172 6112 839 130 15 0 chr6 43161728 43161859 -146117695 - FLAM_C SINE Alu 0 133 1 784 121 25 126 chr6 43161859 43162000 -146117554 - L1MB7 LINE L1 -72 6112 5995 843 96 0 17 chr6 43162000 43162115 -146117439 - AluSp/q SINE Alu -19 294 182 489 138 46 0 chr6 43162123 43162210 -146117344 - L1MB7 LINE L1 -200 5984 5894 972 157 7 0 chr6 43162210 43162350 -146117204 - FRAM SINE Alu -36 140 1 2232 107 7 7 chr6 43162520 43162829 -146116725 + AluY SINE Alu 1 309 -2 685 245 7 0 chr6 43162851 43162994 -146116560 - AluJ SINE Alu -31 281 138 1841 146 6 40 chr6 43162994 43163323 -146116231 - pTR5 LTR ERV1 -2055 383 66 263 320 16 31 chr6 43163323 43163451 -146116103 - LTR30 LTR ERV1 -80 642 517 265 0 0 0 chr6 43163451 43163482 -146116072 - pTR5 LTR ERV1 -439 1999 1969 4864 164 52 39 chr6 43163504 43164508 -146115046 - pTR5 LTR ERV1 -679 1759 743 2324 105 0 10 chr6 43164525 43164829 -146114725 - AluSx SINE Alu -11 301 1 24 0 0 0 chr6 43164829 43164853 -146114701 + AT_rich Low_complexity Low_complexity 1 24 0 987 131 0 0 chr6 43164879 43165009 -146114545 - AluJ SINE Alu -171 141 12 2262 80 35 0 chr6 43165050 43165339 -146114215 - AluY SINE Alu -12 299 1 237 289 41 0 chr6 43165340 43165437 -146114117 - L1P LINE L1 -1135 5011 4911 2204 131 3 0 chr6 43165518 43165823 -146113731 - AluSx SINE Alu -6 306 1 353 293 78 48 chr6 43165823 43165990 -146113564 - L1M4 LINE L1 -1732 4414 4243 2231 147 0 0 chr6 43166012 43166324 -146113230 - AluSx SINE Alu 0 312 1 1634 157 111 7 chr6 43166331 43166611 -146112943 - AluSg1 SINE Alu 0 309 1 2496 87 0 0 chr6 43166666 43166966 -146112588 - AluSc SINE Alu -9 300 1 1966 174 0 0 chr6 43166977 43167271 -146112283 - AluJb SINE Alu -18 294 1 698 215 19 68 chr6 43167907 43168112 -146111442 - MLT1J LTR MaLR -78 433 239 370 131 0 0 chr6 43168192 43168253 -146111301 - MER5A DNA MER1_type -80 109 49 253 299 13 13 chr6 43168270 43168347 -146111207 - MLT1J LTR MaLR -298 213 137 2369 100 0 0 chr6 43168536 43168827 -146110727 + AluSg SINE Alu 1 291 -19 2237 113 3 16 chr6 43169021 43169330 -146110224 + AluSg SINE Alu 6 310 0 2337 81 17 7 chr6 43169339 43169635 -146109919 + AluSp SINE Alu 1 299 -14 293 145 32 0 chr6 43169784 43169846 -146109708 + L1MB3 LINE L1 5257 5320 -848 2052 122 10 10 chr6 43169875 43170171 -146109383 - AluJo SINE Alu -16 296 1 401 119 59 153 chr6 43170172 43170290 -146109264 + L1MB3 LINE L1 5461 5567 -616 1857 170 24 83 chr6 43170304 43170545 -146109009 - MER21B LTR ERV1 -3 860 651 6782 39 0 18 chr6 43170545 43171338 -146108216 - SVA Other Other 0 1386 608 1857 170 24 83 chr6 43171338 43171506 -146108048 - MER21B LTR ERV1 -212 651 475 446 88 75 12 chr6 43171506 43171586 -146107968 - LTR23 LTR ERV1 0 437 353 2232 90 7 0 chr6 43171622 43171928 -146107626 - AluSg SINE Alu 0 308 1 1978 150 0 7 chr6 43171947 43172241 -146107313 - AluJo SINE Alu -14 298 7 2341 154 130 2 chr6 43172301 43172724 -146106830 - MER21B LTR ERV1 -386 477 1 2694 114 26 42 chr6 43172724 43172846 -146106708 + L1MB3 LINE L1 5561 5683 -500 2439 67 20 3 chr6 43172846 43173144 -146106410 + AluSq SINE Alu 1 303 -10 2694 114 26 42 chr6 43173144 43173478 -146106076 + L1MB3 LINE L1 5683 6010 -173 1752 164 22 63 chr6 43173478 43173536 -146106018 + MER57A LTR ERV1 7 66 -337 2292 109 3 10 chr6 43173536 43173849 -146105705 + AluSp SINE Alu 1 311 -2 1752 164 22 63 chr6 43173849 43174204 -146105350 + MER57A LTR ERV1 66 403 0 574 205 8 8 chr6 43174204 43174326 -146105228 + L1MB3 LINE L1 6006 6127 -56 2204 192 70 24 chr6 43174667 43175249 -146104305 + pTR5 LTR ERV1 734 1342 -1096 3370 139 57 135 chr6 43175261 43176152 -146103402 + LTR12 LTR ERV1 5 826 0 2085 126 3 3 chr6 43176221 43176507 -146103047 + AluSx SINE Alu 2 287 -25 2392 104 3 0 chr6 43176814 43177123 -146102431 - AluSp SINE Alu -3 310 1 2083 93 3 84 chr6 43177815 43178147 -146101407 - AluSq SINE Alu -8 305 1 2251 90 0 17 chr6 43178149 43178438 -146101116 - AluSq SINE Alu 0 313 30 1681 146 62 31 chr6 43178533 43178821 -146100733 - AluJb SINE Alu -15 297 1 1051 157 13 0 chr6 43179748 43179907 -146099647 - AluJb SINE Alu -18 294 134 2345 108 3 0 chr6 43179937 43180243 -146099311 + AluSx SINE Alu 3 309 -3 2330 112 0 3 chr6 43180243 43180555 -146098999 + AluSx SINE Alu 1 311 -1 663 267 12 6 chr6 43180926 43181087 -146098467 - MER58B DNA MER1_type -1 340 179 186 43 0 0 chr6 43181100 43181123 -146098431 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2327 122 0 0 chr6 43181130 43181442 -146098112 - AluJb SINE Alu 0 312 1 2205 96 11 0 chr6 43181753 43182057 -146097497 - AluSx SINE Alu 0 307 1 209 259 35 0 chr6 43182171 43182229 -146097325 - L2 LINE L2 -1067 2247 2188 1051 241 106 29 chr6 43182447 43182824 -146096730 - MLT1C LTR MaLR -3 464 59 183 42 0 0 chr6 43184181 43184205 -146095349 + (CCCTG)n Simple_repeat Simple_repeat 3 26 0 1020 80 0 0 chr6 43184548 43184673 -146094881 - AluY SINE Alu -10 301 177 1841 88 4 28 chr6 43184673 43184924 -146094630 - AluY SINE Alu -66 245 1 1597 126 9 0 chr6 43185092 43185315 -146094239 - AluSg/x SINE Alu -3 307 83 1680 172 62 10 chr6 43185376 43185667 -146093887 + AluJb SINE Alu 1 306 -6 1917 152 14 3 chr6 43186351 43186634 -146092920 - AluJo SINE Alu -17 295 10 371 275 96 62 chr6 43187739 43187886 -146091668 - MIR SINE MIR 0 262 107 2335 75 0 0 chr6 43187886 43188164 -146091390 + AluSp SINE Alu 18 295 -18 371 275 96 62 chr6 43188164 43188194 -146091360 - MIR SINE MIR -155 107 79 2115 123 17 3 chr6 43188257 43188557 -146090997 - AluSq SINE Alu -9 304 1 336 85 0 0 chr6 43188558 43188605 -146090949 + MER112 DNA MER1_type 6 52 -208 1081 113 0 0 chr6 43188609 43188751 -146090803 + AluSq/x SINE Alu 5 146 -166 356 154 22 132 chr6 43188751 43188801 -146090753 + MER112 DNA MER1_type 7 61 -199 2263 116 0 0 chr6 43188801 43189095 -146090459 + AluSx SINE Alu 5 298 -14 356 154 22 132 chr6 43189095 43189180 -146090374 + MER112 DNA MER1_type 61 127 -133 269 172 16 0 chr6 43189184 43189248 -146090306 - MER57A LTR ERV1 0 403 339 766 180 8 0 chr6 43189248 43189376 -146090178 + FLAM_C SINE Alu 2 130 -3 1713 140 0 8 chr6 43189401 43189644 -146089910 + AluSx SINE Alu 60 300 -12 2207 123 0 0 chr6 43189725 43190018 -146089536 - AluSx SINE Alu -19 293 1 320 318 40 16 chr6 43190041 43190167 -146089387 + L2 LINE L2 3137 3265 -7 1256 316 70 8 chr6 43190172 43190697 -146088857 + L3 LINE CR1 564 1121 -456 253 331 35 9 chr6 43190711 43191012 -146088542 + L1M3 LINE L1 5126 5436 -732 248 233 44 11 chr6 43191013 43191103 -146088451 + L1ME LINE L1 52 144 -5975 2372 102 0 3 chr6 43191103 43191406 -146088148 + AluSx SINE Alu 1 302 -10 639 152 27 0 chr6 43191591 43191703 -146087851 - FLAM_C SINE Alu 0 143 29 445 313 50 35 chr6 43191853 43192054 -146087500 + L1ME LINE L1 520 723 -5396 1603 154 55 18 chr6 43192294 43192567 -146086987 + AluJb SINE Alu 15 297 -15 231 176 0 0 chr6 43192656 43192690 -146086864 + AluSx SINE Alu 1 34 -266 4044 130 23 140 chr6 43192690 43194170 -146085384 - pTR5 LTR ERV1 0 2606 1524 1741 147 19 4 chr6 43194170 43194266 -146085288 + AluSx SINE Alu 31 124 -188 282 29 0 0 chr6 43194266 43194301 -146085253 + (CA)n Simple_repeat Simple_repeat 2 36 0 1741 147 19 4 chr6 43194301 43194463 -146085091 + AluSx SINE Alu 124 293 -19 1504 166 75 23 chr6 43194496 43194761 -146084793 + AluJb SINE Alu 11 289 -23 227 319 205 6 chr6 43195622 43195788 -146083766 + MIR SINE MIR 20 218 -44 1914 142 7 26 chr6 43195798 43196107 -146083447 - AluJo SINE Alu -6 306 4 770 288 78 33 chr6 43196211 43196493 -146083061 + L1ME LINE L1 680 991 -5128 1726 195 0 13 chr6 43196493 43196795 -146082759 + AluJb SINE Alu 1 298 -14 770 288 78 33 chr6 43196795 43196963 -146082591 + L1ME LINE L1 991 1150 -4969 242 306 59 0 chr6 43197000 43197085 -146082469 - L2 LINE L2 -6 3307 3218 2025 100 64 0 chr6 43197239 43197520 -146082034 + AluSg SINE Alu 12 310 0 265 369 0 0 chr6 43197523 43197672 -146081882 + HAL1 LINE L1 1460 1608 -899 378 248 98 15 chr6 43197758 43197891 -146081663 + L1MC5 LINE L1 7603 7746 -215 5197 146 121 30 chr6 43197899 43199070 -146080484 - MER52C LTR ERV1 0 1278 1 330 327 92 9 chr6 43199091 43199308 -146080246 + L1ME LINE L1 5426 5660 -510 1130 126 0 0 chr6 43199408 43199567 -146079987 - AluSp/q SINE Alu 0 313 155 305 163 0 0 chr6 43199567 43199616 -146079938 - pTR5 LTR ERV1 -1648 790 742 958 140 0 0 chr6 43199616 43199759 -146079795 + AluSg/x SINE Alu 148 290 -22 653 276 112 28 chr6 43199762 43200154 -146079400 + L1MC5 LINE L1 7253 7677 -284 2158 99 3 33 chr6 43200644 43200970 -146078584 + AluSc SINE Alu 1 309 0 1851 90 0 0 chr6 43201064 43201315 -146078239 + AluSg SINE Alu 60 310 0 2314 72 0 4 chr6 43201512 43201790 -146077764 + AluSg SINE Alu 5 281 -29 291 28 0 0 chr6 43201791 43201827 -146077727 + (CA)n Simple_repeat Simple_repeat 2 37 0 1281 336 58 56 chr6 43201842 43201989 -146077565 - HERVL LTR ERVL -2851 2145 2000 1555 184 20 16 chr6 43201989 43202293 -146077261 - AluJo SINE Alu -1 311 7 1281 336 58 56 chr6 43202293 43202483 -146077071 - HERVL LTR ERVL -2996 2000 1812 1945 137 7 11 chr6 43202483 43202790 -146076764 - AluJb SINE Alu 0 306 1 1281 336 58 56 chr6 43202790 43202832 -146076722 - HERVL LTR ERVL -3184 1812 1772 2263 106 6 13 chr6 43202832 43203324 -146076230 - AluSg SINE Alu 0 310 1 1281 336 58 56 chr6 43203324 43204420 -146075134 - HERVL LTR ERVL -3224 1772 736 467 345 0 0 chr6 43204544 43204715 -146074839 - HERVL LTR ERVL -5148 616 446 801 163 8 0 chr6 43204728 43204851 -146074703 - FLAM_C SINE Alu -18 125 2 2199 105 10 7 chr6 43205242 43205538 -146074016 - AluSp SINE Alu -16 297 1 398 228 8 41 chr6 43205556 43205679 -146073875 - LTR41 LTR ERVL -6 767 649 610 178 8 8 chr6 43206191 43206309 -146073245 - LTR41 LTR ERVL -585 188 71 715 176 16 0 chr6 43206331 43206456 -146073098 + FLAM_A SINE Alu 1 127 -6 375 231 75 92 chr6 43206573 43206700 -146072854 + L1M4 LINE L1 4163 4291 -1855 2473 97 0 0 chr6 43206700 43207010 -146072544 - AluSq SINE Alu -3 310 1 375 231 75 92 chr6 43207010 43207089 -146072465 + L1M4 LINE L1 4291 4370 -1776 1835 177 7 3 chr6 43207089 43207389 -146072165 + AluJo SINE Alu 3 303 -9 375 231 75 92 chr6 43207389 43207476 -146072078 + L1M4 LINE L1 4370 4452 -1694 1427 309 77 32 chr6 43207499 43207678 -146071876 + L1M4 LINE L1 10 180 -6362 2230 85 0 7 chr6 43207678 43208013 -146071541 - AluSc SINE Alu 0 333 1 1427 309 77 32 chr6 43208013 43208573 -146070981 + L1M4 LINE L1 180 784 -5758 460 118 35 0 chr6 43208617 43208702 -146070852 + CT-rich Low_complexity Low_complexity 2 89 0 1659 115 0 0 chr6 43208702 43208919 -146070635 - AluSq SINE Alu -95 218 2 231 152 0 0 chr6 43208963 43208996 -146070558 + Alu SINE Alu 1 33 -266 2347 113 0 0 chr6 43209188 43209489 -146070065 + AluSx SINE Alu 1 301 -11 1013 98 0 0 chr6 43209729 43209862 -146069692 + AluSq/x SINE Alu 1 133 -180 2103 146 3 0 chr6 43209939 43210241 -146069313 - AluSg SINE Alu -7 303 1 180 77 0 0 chr6 43211726 43211752 -146067802 + (TC)n Simple_repeat Simple_repeat 2 27 0 999 271 107 22 chr6 43212052 43212509 -146067045 - L2 LINE L2 0 3313 2818 229 320 26 0 chr6 43213146 43213224 -146066330 - MIR3 SINE MIR -20 188 109 247 308 8 17 chr6 43214041 43214158 -146065396 + GA-rich Low_complexity Low_complexity 1 116 0 602 191 7 0 chr6 43214332 43214473 -146065081 + (TCCA)n Simple_repeat Simple_repeat 1 142 0 2385 83 7 0 chr6 43214634 43214934 -146064620 + AluSq SINE Alu 1 302 -11 554 180 0 0 chr6 43214973 43215062 -146064492 + FRAM SINE Alu 22 110 -66 237 33 0 0 chr6 43215528 43215558 -146063996 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 619 244 127 40 chr6 43216747 43217071 -146062483 + L1ME4a LINE L1 5599 5950 -171 24 67 0 0 chr6 43217162 43217207 -146062347 + AT_rich Low_complexity Low_complexity 1 45 0 2366 95 7 7 chr6 43217305 43217609 -146061945 + AluSp SINE Alu 1 304 -9 363 221 0 58 chr6 43217744 43217830 -146061724 + L2 LINE L2 3186 3266 -6 528 290 31 37 chr6 43217942 43218104 -146061450 - MER5B DNA MER1_type -4 174 14 1871 175 14 0 chr6 43218178 43218475 -146061079 + AluJb SINE Alu 1 301 -11 2365 92 3 0 chr6 43218885 43219179 -146060375 + AluSp SINE Alu 2 296 -17 447 246 196 0 chr6 43219866 43220004 -146059550 - MER5A DNA MER1_type 0 189 25 221 330 11 23 chr6 43220028 43220116 -146059438 + L2 LINE L2 3143 3229 -43 1864 133 55 14 chr6 43220798 43221091 -146058463 + AluJb SINE Alu 1 305 -7 39 0 0 0 chr6 43223022 43223061 -146056493 + GC_rich Low_complexity Low_complexity 1 39 0 21 71 0 0 chr6 43326682 43326724 -145952830 + AT_rich Low_complexity Low_complexity 1 42 0 422 200 19 25 chr6 43326796 43326924 -145952630 - MER63 DNA MER1_type -5 1057 701 268 229 16 0 chr6 43326905 43326966 -145952588 - MER63 DNA MER1_type -864 66 5 * 195 42 0 0 chr6 43327691 43327715 -145951839 + (CAGGA)n Simple_repeat Simple_repeat 1 24 0 266 188 101 0 chr6 43329617 43329686 -145949868 + MER5A DNA MER1_type 28 103 -86 254 144 10 87 chr6 43331199 43331303 -145948251 + GA-rich Low_complexity Low_complexity 3 98 0 216 265 29 0 chr6 43332493 43332561 -145946993 - L2 LINE L2 -3 3310 3241 693 294 117 15 chr6 43332779 43333112 -145946442 + LTR33 LTR ERVL 155 521 0 1238 216 109 11 chr6 43335852 43336199 -145943355 - MER58D DNA MER1_type -2 384 4 256 300 25 25 chr6 43336202 43336282 -145943272 - MIR3 SINE MIR -48 160 81 257 246 33 0 chr6 43336346 43336407 -145943147 - L2 LINE L2 -2 3311 3249 412 195 8 117 chr6 43337670 43337798 -145941756 - MER81 DNA DNA 0 114 1 516 278 133 26 chr6 43338329 43338563 -145940991 - MIR SINE MIR 0 262 4 2634 84 19 3 chr6 43339026 43339394 -145940160 - THE1C LTR MaLR 0 375 2 505 294 119 68 chr6 43339524 43340036 -145939518 + L1ME4a LINE L1 827 6103 -18 543 315 120 0 chr6 43340302 43340626 -145938928 + L1ME4a LINE L1 5526 5888 -233 21 71 0 0 chr6 43340741 43340783 -145938771 + AT_rich Low_complexity Low_complexity 1 42 0 2144 143 0 10 chr6 43341128 43341436 -145938118 + AluSx SINE Alu 1 305 -7 955 277 149 34 chr6 43341453 43342571 -145936983 + L1ME3A LINE L1 4623 5914 -256 2174 120 10 0 chr6 43342622 43342913 -145936641 + AluJb SINE Alu 1 294 -18 2388 92 0 0 chr6 43343043 43343338 -145936216 + AluY SINE Alu 1 295 -16 290 181 0 14 chr6 43343610 43343682 -145935872 + GA-rich Low_complexity Low_complexity 3 73 0 1341 91 5 0 chr6 43343701 43343898 -145935656 - L1PA13 LINE L1 -2 6161 5964 733 212 84 0 chr6 43344052 43344231 -145935323 - MER3 DNA MER1_type -3 206 13 1246 128 90 0 chr6 43344233 43344444 -145935110 - MER30 DNA MER1_type 0 230 1 470 247 114 12 chr6 43345170 43345336 -145934218 - MIR3 SINE MIR -9 199 17 287 259 259 0 chr6 43346050 43346208 -145933346 - MIR SINE MIR -11 251 53 707 211 125 89 chr6 43346248 43346461 -145933093 - L2 LINE L2 -1 3312 3079 1067 237 66 42 chr6 43346461 43346722 -145932832 - MER58B DNA MER1_type -2079 341 68 2101 126 0 3 chr6 43346722 43347029 -145932525 + AluSx SINE Alu 1 306 0 1067 237 66 42 chr6 43347029 43347099 -145932455 - MER58B DNA MER1_type -2352 68 1 707 211 125 89 chr6 43347099 43347254 -145932300 - L2 LINE L2 -234 3079 2931 465 219 76 0 chr6 43347379 43347498 -145932056 + MIR SINE MIR 66 193 -69 223 289 0 0 chr6 43348643 43348688 -145930866 + G-rich Low_complexity Low_complexity 1 45 0 205 266 0 78 chr6 43350182 43350222 -145929332 - MIR SINE MIR -191 71 36 2453 94 0 0 chr6 43350222 43350521 -145929033 - AluY SINE Alu -12 299 1 205 266 0 78 chr6 43350521 43350544 -145929010 - MIR SINE MIR -226 36 13 219 248 137 38 chr6 43350680 43350821 -145928733 + MIR SINE MIR 30 188 -63 387 217 161 56 chr6 43350959 43351120 -145928434 + MER5B DNA MER1_type 1 178 0 2252 109 7 3 chr6 43351716 43352020 -145927534 + AluSx SINE Alu 1 305 -7 191 146 125 42 chr6 43352468 43352516 -145927038 + L2 LINE L2 3184 3235 -37 220 289 0 0 chr6 43352643 43352695 -145926859 - MER5B DNA MER1_type -1 177 126 397 287 125 0 chr6 43352837 43352973 -145926581 + MIR SINE MIR 14 166 -96 525 235 41 59 chr6 43354804 43354974 -145924580 - MIR SINE MIR 0 262 96 199 296 167 8 chr6 43355127 43355259 -145924295 + MIR SINE MIR 67 219 -43 587 226 50 13 chr6 43356780 43356939 -145922615 - MER96B DNA MER1_type? -3 414 250 180 0 0 0 chr6 43357073 43357093 -145922461 + (T)n Simple_repeat Simple_repeat 1 20 0 438 263 220 11 chr6 43357137 43357323 -145922231 - MIR SINE MIR -9 253 29 564 271 78 37 chr6 43358732 43358794 -145920760 + MLT1G1 LTR MaLR 2 60 -535 718 178 167 0 chr6 43358794 43358968 -145920586 + MER3 DNA MER1_type 3 205 -4 564 271 78 37 chr6 43358968 43359123 -145920431 + MLT1G1 LTR MaLR 60 228 -367 687 276 118 72 chr6 43359440 43359871 -145919683 + LTR33 LTR ERVL 1 451 -70 244 323 110 16 chr6 43360040 43360167 -145919387 + L2 LINE L2 3168 3306 -7 1656 171 171 23 chr6 43360203 43360601 -145918953 + MSTB2 LTR MaLR 1 457 0 1103 240 58 58 chr6 43360603 43360716 -145918838 - MLT1I LTR MaLR 0 409 297 1864 189 89 5 chr6 43360716 43361108 -145918446 - MSTB LTR MaLR 0 426 2 1103 240 58 58 chr6 43361108 43361323 -145918231 - MLT1I LTR MaLR -111 298 81 1286 181 86 26 chr6 43361646 43361685 -145917869 + Charlie1b DNA MER1_type 66 101 -2660 2634 53 0 0 chr6 43361685 43361987 -145917567 + AluY SINE Alu 2 303 -8 1286 181 86 26 chr6 43361987 43362295 -145917259 + Charlie1b DNA MER1_type 101 434 -89 806 138 152 33 chr6 43362300 43362531 -145917023 + L1MA8 LINE L1 6042 6288 -3 334 184 9 88 chr6 43362539 43362605 -145916949 + Charlie1b DNA MER1_type 419 474 -2287 2016 154 0 20 chr6 43362605 43362949 -145916605 - MER1B DNA MER1_type 0 337 1 334 184 9 88 chr6 43362949 43362996 -145916558 + Charlie1b DNA MER1_type 474 523 0 2342 223 70 2 chr6 43363846 43364371 -145915183 + MLT1F1 LTR MaLR 1 561 -6 476 273 87 31 chr6 43364506 43364667 -145914887 + LTR33 LTR ERVL 23 192 -329 304 230 79 52 chr6 43365138 43365315 -145914239 + MIR SINE MIR 20 192 -60 306 276 47 55 chr6 43365343 43365470 -145914084 - MIR SINE MIR -136 126 1 2116 121 0 29 chr6 43365739 43366046 -145913508 - AluSq SINE Alu -14 299 2 755 149 0 8 chr6 43366057 43366191 -145913363 - AluSp/q SINE Alu -4 309 177 1095 94 22 0 chr6 43366191 43366329 -145913225 + AluSq/x SINE Alu 10 150 -162 350 241 133 93 chr6 43366380 43366704 -145912850 - MER46C DNA MER2_type -1 337 1 908 232 137 82 chr6 43366941 43367429 -145912125 + LTR33 LTR ERVL 7 521 0 746 275 65 0 chr6 43368070 43368299 -145911255 + MIR SINE MIR 3 246 -16 933 243 110 36 chr6 43368310 43368647 -145910907 + MLT1A1 LTR MaLR 1 362 -3 455 115 39 13 chr6 43370202 43370280 -145909274 + MADE1 DNA Mariner 1 80 0 383 302 112 54 chr6 43370692 43371156 -145908398 + LTR16C LTR ERVL 1 491 0 331 299 117 45 chr6 43371224 43371625 -145907929 + L2 LINE L2 1870 2299 -1015 1953 138 24 7 chr6 43371799 43372088 -145907466 + AluSx SINE Alu 1 294 -18 264 288 56 31 chr6 43372340 43372500 -145907054 - MLT1K LTR MaLR -24 564 401 555 287 48 38 chr6 43372596 43372870 -145906684 - MLT1K LTR MaLR -342 246 2 1103 197 5 0 chr6 43374309 43374507 -145905047 - MER58A DNA MER1_type 0 224 26 807 304 75 23 chr6 43375137 43375443 -145904111 - MLT1J2 LTR MaLR -128 322 1 1684 259 52 15 chr6 43375564 43376023 -145903531 + LTR40a LTR ERVL 42 517 -2 223 180 40 20 chr6 43376212 43376262 -145903292 - MER91C DNA MER1_type -32 108 58 542 221 64 20 chr6 43376287 43376436 -145903118 - HsTC2 DNA Tc2 -7 1891 1729 2033 141 0 7 chr6 43376436 43376740 -145902814 - AluJb SINE Alu -8 304 3 542 221 64 20 chr6 43376740 43376794 -145902760 - HsTC2 DNA Tc2 -169 1729 1679 4129 193 83 55 chr6 43376795 43377233 -145902321 + L1ME1 LINE L1 4102 4526 -1640 4906 102 6 0 chr6 43377233 43377880 -145901674 + L1PA12 LINE L1 5518 6168 0 4129 193 83 55 chr6 43377880 43378994 -145900560 + L1ME1 LINE L1 4526 5686 -480 1209 227 64 0 chr6 43378994 43379245 -145900309 + Tigger7 DNA MER2_type 1 267 -466 642 137 0 39 chr6 43379243 43379345 -145900209 + Tigger7 DNA MER2_type 2490 2587 0 * 1520 214 146 0 chr6 43379345 43379728 -145899826 + L1ME1 LINE L1 5685 6123 -43 330 306 55 22 chr6 43379835 43380018 -145899536 + LTR33 LTR ERVL 332 520 -1 241 273 121 0 chr6 43380042 43380141 -145899413 - MLT1J LTR MaLR -296 215 105 22 35 0 0 chr6 43380431 43380460 -145899094 + AT_rich Low_complexity Low_complexity 1 29 0 650 332 40 20 chr6 43381093 43381233 -145898321 + MIR SINE MIR 3 152 -110 1318 313 35 7 chr6 43381233 43381684 -145897870 + LTR16B LTR ERVL 1 464 0 650 332 40 20 chr6 43381684 43381796 -145897758 + MIR SINE MIR 152 260 -2 598 271 97 10 chr6 43381841 43382048 -145897506 + L1MEd LINE L1 428 652 -5878 696 290 77 0 chr6 43382272 43382493 -145897061 + L1MEd LINE L1 980 1217 -5313 2596 89 40 0 chr6 43382495 43382845 -145896709 - L1PA13 LINE L1 -5 6158 5795 259 311 0 52 chr6 43382964 43383099 -145896455 - LTR16C LTR ERVL -2 489 362 341 222 179 53 chr6 43383595 43383802 -145895752 + L1MEd LINE L1 1329 1561 -4969 22 0 0 0 chr6 43384031 43384053 -145895501 + AT_rich Low_complexity Low_complexity 1 22 0 3714 112 52 2 chr6 43385023 43385594 -145893960 + HSMAR2 DNA Mariner 703 1302 0 321 223 78 28 chr6 43385595 43385714 -145893840 + L1MEd LINE L1 1846 1956 -4584 696 330 95 21 chr6 43386262 43386641 -145892913 + LTR16C LTR ERVL 85 491 0 411 225 109 29 chr6 43386845 43386983 -145892571 - MER104 DNA Tc2 -13 167 19 997 274 114 43 chr6 43387021 43387973 -145891581 + L1MEd LINE L1 2528 3547 -2993 1933 131 10 22 chr6 43388335 43388647 -145890907 + AluSx SINE Alu 1 308 -4 2787 192 133 20 chr6 43388725 43389429 -145890125 + L1MEd LINE L1 415 1198 -5342 4464 153 63 21 chr6 43389437 43390281 -145889273 + L1MB3 LINE L1 5304 6182 -1 2338 98 20 0 chr6 43390288 43390594 -145888960 + AluSx SINE Alu 1 312 0 239 148 91 68 chr6 43390644 43390732 -145888822 + L1MEd LINE L1 1266 1355 -5185 2025 165 39 97 chr6 43390832 43391419 -145888135 + L1MEd LINE L1 1390 1942 -4598 384 201 127 15 chr6 43391426 43391560 -145887994 + L1M4 LINE L1 4417 4565 -1581 313 263 166 23 chr6 43391582 43391757 -145887797 + L1M4 LINE L1 4633 4832 -1314 * 651 282 171 3 chr6 43391743 43392076 -145887478 + L1MEd LINE L1 4254 4642 -1898 2484 113 11 8 chr6 43393121 43393474 -145886080 + THE1A LTR MaLR 1 354 -1 12603 89 6 1 chr6 43393479 43395047 -145884507 + THE1A-int LTR MaLR 5 1580 0 461 0 19 0 chr6 43395047 43395100 -145884454 + THE1A LTR MaLR 1 54 -301 261 270 16 0 chr6 43395124 43395187 -145884367 - HAL1b LINE L1 -466 882 819 560 257 73 14 chr6 43395632 43396030 -145883524 + LTR16B LTR ERVL 1 464 0 509 268 154 22 chr6 43396033 43396391 -145883163 - HAL1 LINE L1 -873 1634 1230 188 196 39 39 chr6 43397595 43397646 -145881908 + L2 LINE L2 2867 2917 -355 941 274 275 27 chr6 43398761 43398988 -145880566 + L2 LINE L2 1989 2158 -1155 2171 97 20 7 chr6 43398988 43399286 -145880268 - AluSq SINE Alu -11 302 1 941 274 275 27 chr6 43399286 43399826 -145879728 + L2 LINE L2 2158 2563 -750 2162 72 0 0 chr6 43399826 43400091 -145879463 - AluY SINE Alu -26 285 21 941 274 275 27 chr6 43400091 43400375 -145879179 + L2 LINE L2 2563 3312 -1 1639 169 32 0 chr6 43400762 43401041 -145878513 + AluJo SINE Alu 1 288 -24 212 254 0 32 chr6 43401557 43401620 -145877934 - L2 LINE L2 -1 3271 3211 243 0 0 0 chr6 43403369 43403396 -145876158 + (T)n Simple_repeat Simple_repeat 1 27 0 282 206 68 14 chr6 43404010 43404083 -145875471 - MLT1K LTR MaLR -3 585 509 319 312 104 8 chr6 43404369 43404494 -145875060 - MLT1K LTR MaLR -408 180 44 1749 194 118 6 chr6 43404613 43404969 -145874585 - MSTD LTR MaLR 0 396 1 909 270 77 51 chr6 43405967 43406460 -145873094 + LTR33 LTR ERVL 15 520 -1 860 243 117 48 chr6 43406878 43407253 -145872301 + MLT1I LTR MaLR 1 401 -8 4194 187 56 37 chr6 43407361 43408206 -145871348 + MER21B LTR ERV1 1 861 -2 671 254 15 63 chr6 43408983 43409188 -145870366 + MLT1F1 LTR MaLR 3 197 -345 * 712 233 135 0 chr6 43409187 43409344 -145870210 + MLT1F1 LTR MaLR 322 517 -50 300 83 104 0 chr6 43409344 43409392 -145870162 - L1MA5A LINE L1 -6 6291 6239 712 233 135 0 chr6 43409392 43409449 -145870105 + MLT1F1 LTR MaLR 517 565 -2 249 222 63 0 chr6 43410235 43410298 -145869256 + LTR33A LTR ERVL 457 523 0 6228 172 41 21 chr6 43411377 43412059 -145867495 - L1PA13 LINE L1 -7 6156 5489 2283 99 14 0 chr6 43412059 43412351 -145867203 + AluSx SINE Alu 1 296 -16 6228 172 41 21 chr6 43412351 43413672 -145865882 - L1PA13 LINE L1 -674 5489 4121 1114 117 13 0 chr6 43413968 43414122 -145865432 - AluSg/x SINE Alu -24 288 133 232 264 99 11 chr6 43414289 43414380 -145865174 + MIR3 SINE MIR 75 173 -35 603 254 40 45 chr6 43414482 43414659 -145864895 - MER5B DNA MER1_type 0 178 3 833 179 91 111 chr6 43415233 43415629 -145863925 - LTR61 LTR ERV1 0 595 208 3175 249 14 8 chr6 43415709 43416424 -145863130 - HERV3 LTR ERV1 0 8426 7708 19069 244 26 35 chr6 43416456 43421091 -145858463 - HERV3 LTR ERV1 -3833 4593 1 728 191 130 125 chr6 43421095 43421496 -145858058 - LTR15 LTR ERV1 -5 590 156 367 293 19 76 chr6 43422646 43422803 -145856751 - MER5A DNA MER1_type -41 148 1 338 297 34 0 chr6 43423359 43423477 -145856077 + LTR16C LTR ERVL 1 122 -369 1045 203 129 0 chr6 43423503 43423744 -145855810 + LTR16C LTR ERVL 188 459 -32 795 195 0 0 chr6 43524888 43525301 -145754253 + (CA)n Simple_repeat Simple_repeat 1 413 0 237 75 57 0 chr6 43525316 43525369 -145754185 + (CA)n Simple_repeat Simple_repeat 2 57 0 364 279 240 0 chr6 43526764 43526972 -145752582 - LTR16C LTR ERVL -58 433 176 295 359 30 24 chr6 43527318 43527485 -145752069 + MIR SINE MIR 49 216 -46 276 250 0 0 chr6 43528071 43528127 -145751427 - MIR SINE MIR -115 147 92 261 227 45 109 chr6 43528516 43528626 -145750928 + MIR SINE MIR 34 146 -62 3207 263 80 26 chr6 43528885 43528924 -145750630 + L2 LINE L2 1612 1647 -1666 2081 132 146 13 chr6 43528924 43529302 -145750252 + MSTA LTR MaLR 1 428 0 3207 263 80 26 chr6 43529302 43530598 -145748956 + L2 LINE L2 1647 3040 -273 2321 134 121 3 chr6 43530598 43530979 -145748575 + MSTB LTR MaLR 1 426 0 3207 263 80 26 chr6 43530979 43531048 -145748506 + L2 LINE L2 3040 3104 -209 475 259 284 5 chr6 43531484 43531685 -145747869 + MIR SINE MIR 6 262 0 533 299 0 7 chr6 43532161 43532308 -145747246 - MIR SINE MIR -99 163 18 870 241 75 17 chr6 43532335 43532701 -145746853 + LTR16C LTR ERVL 40 461 -30 376 223 146 21 chr6 43533087 43533261 -145746293 + MIR SINE MIR 7 193 -15 441 98 63 29 chr6 43533613 43533787 -145745767 + (CA)n Simple_repeat Simple_repeat 1 180 0 491 104 52 23 chr6 43533845 43534018 -145745536 + (CA)n Simple_repeat Simple_repeat 1 178 0 460 157 36 18 chr6 43534097 43534385 -145745169 + (CA)n Simple_repeat Simple_repeat 1 293 0 299 304 50 43 chr6 43535020 43535181 -145744373 + MIR SINE MIR 27 188 -74 195 261 77 39 chr6 43536012 43536142 -145743412 + L2 LINE L2 2840 2974 -339 735 198 208 5 chr6 43536300 43536492 -145743062 + MIR SINE MIR 32 262 0 272 378 112 0 chr6 43538331 43538564 -145740990 + L2 LINE L2 2832 3090 -182 405 283 29 36 chr6 43538735 43538873 -145740681 - L2 LINE L2 -39 3274 3138 202 284 91 23 chr6 43539064 43539152 -145740402 - MIR SINE MIR -55 207 114 189 247 65 13 chr6 43539239 43539316 -145740238 + MIR SINE MIR 65 145 -117 303 331 46 0 chr6 43539753 43539883 -145739671 - MIR SINE MIR -67 195 60 1062 251 125 45 chr6 43540460 43541240 -145738314 + L2 LINE L2 2489 3313 0 453 81 0 0 chr6 43541540 43541602 -145737952 + (CA)n Simple_repeat Simple_repeat 1 62 0 294 290 30 38 chr6 43541849 43541980 -145737574 + MIR SINE MIR 21 150 -112 261 369 49 8 chr6 43542272 43542394 -145737160 - MIR3 SINE MIR -52 156 30 207 0 0 0 chr6 43542954 43542977 -145736577 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 385 330 55 28 chr6 43543145 43543327 -145736227 - MIR3 SINE MIR -16 192 6 802 254 29 0 chr6 43543398 43543603 -145735951 - MIR SINE MIR -50 212 2 197 242 48 16 chr6 43545620 43545682 -145733872 - L2 LINE L2 -1 3271 3208 1321 240 140 14 chr6 43546318 43546747 -145732807 - L2 LINE L2 -3 3310 2828 587 267 155 0 chr6 43547334 43547521 -145732033 + MIR SINE MIR 10 225 -37 1947 155 0 10 chr6 43547521 43547818 -145731736 + AluJb SINE Alu 1 294 -18 1207 107 0 0 chr6 43547818 43547977 -145731577 + AluSx SINE Alu 1 159 -153 312 251 82 76 chr6 43548086 43548258 -145731296 + MIR3 SINE MIR 17 202 -42 243 396 43 11 chr6 43548314 43548501 -145731053 + L2 LINE L2 2018 2210 -1104 513 271 80 63 chr6 43548532 43548834 -145730720 + MLT1I LTR MaLR 71 377 -32 2245 106 3 0 chr6 43548844 43549145 -145730409 - AluSx SINE Alu -6 306 5 2434 46 16 7 chr6 43549156 43549337 -145730217 - AluY SINE Alu -2 309 122 189 0 0 0 chr6 43549337 43549358 -145730196 + (TG)n Simple_repeat Simple_repeat 2 22 0 2434 46 16 7 chr6 43549358 43549482 -145730072 - AluY SINE Alu -189 122 1 186 356 177 23 chr6 43549523 43549868 -145729686 + L2 LINE L2 2268 2665 -649 470 49 49 0 chr6 43549873 43549955 -145729599 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 3664 228 97 54 chr6 43550053 43550247 -145729307 - L1MEc LINE L1 -4812 1584 1400 2171 94 7 0 chr6 43550247 43550534 -145729020 - AluSc SINE Alu -6 303 15 3664 228 97 54 chr6 43550534 43551105 -145728449 - L1MEc LINE L1 -4996 1400 855 2061 134 3 3 chr6 43551105 43551404 -145728150 - AluSx SINE Alu -13 299 1 3664 228 97 54 chr6 43551404 43552086 -145727468 - L1MEc LINE L1 -5541 855 69 1628 204 58 25 chr6 43552086 43552448 -145727106 + MLT1A2 LTR MaLR 1 374 0 3664 228 97 54 chr6 43552448 43552472 -145727082 - L1MEc LINE L1 -6327 69 47 947 253 18 22 chr6 43552588 43552817 -145726737 - MIR SINE MIR -33 229 2 194 270 201 48 chr6 43553016 43553205 -145726349 - L2 LINE L2 -228 3044 2827 206 273 107 27 chr6 43553260 43553410 -145726144 - L2 LINE L2 -575 2739 2578 518 284 7 14 chr6 43553512 43553660 -145725894 + MLT1J LTR MaLR 192 338 -173 733 195 0 0 chr6 43553942 43554065 -145725489 + FLAM_A SINE Alu 10 132 -10 215 299 9 84 chr6 43554296 43554333 -145725221 + MIR SINE MIR 164 202 -60 1024 256 104 19 chr6 43554333 43554708 -145724846 - MLT1I LTR MaLR -2 407 1 215 299 9 84 chr6 43554708 43554777 -145724777 + MIR SINE MIR 202 262 0 677 322 54 25 chr6 43554802 43554966 -145724588 - L2 LINE L2 -69 3244 3086 180 111 0 0 chr6 43554966 43554993 -145724561 + (TG)n Simple_repeat Simple_repeat 1 27 0 677 322 54 25 chr6 43554993 43555281 -145724273 - L2 LINE L2 -227 3086 2775 983 291 228 5 chr6 43555309 43556223 -145723331 + L2 LINE L2 2107 3251 -62 2211 122 0 6 chr6 43556223 43556535 -145723019 - AluSx SINE Alu -2 310 1 983 291 228 5 chr6 43556535 43556617 -145722937 + L2 LINE L2 3251 3313 0 291 93 0 0 chr6 43557100 43557143 -145722411 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 2097 267 60 72 chr6 43557620 43557853 -145721701 + L1MEd LINE L1 31 265 -5995 1292 171 14 0 chr6 43557853 43558064 -145721490 - MER20 DNA MER1_type -3 216 3 2097 267 60 72 chr6 43558064 43558658 -145720896 + L1MEd LINE L1 265 876 -5384 1340 193 10 53 chr6 43558658 43558958 -145720596 - AluJb SINE Alu -25 287 1 2097 267 60 72 chr6 43558958 43559475 -145720079 + L1MEd LINE L1 876 1398 -4862 210 256 70 77 chr6 43560503 43560647 -145718907 + MIR SINE MIR 42 187 -63 449 259 58 7 chr6 43561533 43561672 -145717882 + MIR SINE MIR 47 192 -70 234 244 0 0 chr6 43561933 43561978 -145717576 + MIR SINE MIR 42 86 -176 1986 106 23 23 chr6 43561994 43562297 -145717257 - AluJb SINE Alu -9 303 1 1135 228 58 26 chr6 43563476 43563823 -145715731 - LTR37A LTR ERV1 -28 398 41 24 0 0 0 chr6 43564020 43564044 -145715510 + AT_rich Low_complexity Low_complexity 1 24 0 1411 170 121 0 chr6 43564060 43564325 -145715229 + AluJb SINE Alu 1 297 -15 691 204 0 0 chr6 43564380 43564522 -145715032 - L1ME3 LINE L1 -25 6137 5996 839 182 0 0 chr6 43564533 43564665 -145714889 + FLAM_C SINE Alu 1 132 -1 1824 104 65 57 chr6 43564692 43565219 -145714335 + MER51A LTR ERV1 1 616 -18 827 201 13 13 chr6 43565224 43565383 -145714171 + AluJb SINE Alu 153 311 -1 2760 235 54 18 chr6 43565386 43566854 -145712700 - L1ME3 LINE L1 -164 5998 4479 262 302 206 0 chr6 43567139 43567265 -145712289 + MIR SINE MIR 98 249 -13 487 279 169 5 chr6 43567739 43567940 -145711614 - MIR SINE MIR -13 249 16 1353 241 71 21 chr6 43568423 43568804 -145710750 + L2 LINE L2 2912 3311 -2 321 132 0 0 chr6 43568910 43568963 -145710591 - MLT1I LTR MaLR -7 402 350 239 152 22 0 chr6 43570491 43570537 -145709017 + MLT1J LTR MaLR 85 131 -380 2072 121 3 3 chr6 43570688 43570995 -145708559 - AluSq SINE Alu -6 307 1 385 256 43 43 chr6 43571183 43571394 -145708160 - L1MC4 LINE L1 -1 8041 7831 387 291 67 39 chr6 43571471 43571551 -145708003 - L1ME2 LINE L1 -20 6144 6068 2244 92 3 0 chr6 43571551 43571844 -145707710 - AluSq SINE Alu -19 294 1 387 291 67 39 chr6 43571844 43571942 -145707612 - L1ME2 LINE L1 -96 6068 5961 612 271 79 110 chr6 43571945 43572336 -145707218 + MLT1J LTR MaLR 85 463 -48 323 228 22 11 chr6 43572542 43572634 -145706920 - MLT1J LTR MaLR -6 505 413 227 217 0 0 chr6 43573333 43573379 -145706175 + (TAA)n Simple_repeat Simple_repeat 2 47 0 220 274 32 0 chr6 43573419 43573481 -145706073 - MIR SINE MIR -81 181 118 1916 160 0 3 chr6 43573482 43573788 -145705766 + AluJb SINE Alu 1 305 -7 207 0 0 0 chr6 43573798 43573821 -145705733 + (GA)n Simple_repeat Simple_repeat 1 23 0 227 224 122 56 chr6 43573821 43573928 -145705626 - MIR SINE MIR -128 134 21 396 295 29 0 chr6 43573962 43574067 -145705487 + MIR SINE MIR 47 154 -108 266 264 45 73 chr6 43575086 43575196 -145704358 + MIR3 SINE MIR 93 199 -9 494 258 25 0 chr6 43575510 43575630 -145703924 - MIR3 SINE MIR -52 156 34 389 227 84 34 chr6 43575826 43575945 -145703609 - L2 LINE L2 -4 3309 3185 3843 170 87 72 chr6 43575959 43577306 -145702248 - pTR5 LTR ERV1 0 2438 743 347 284 42 21 chr6 43579043 43579197 -145700357 + MER5B DNA MER1_type 15 182 -7 202 213 21 0 chr6 43579751 43579798 -145699756 + L2 LINE L2 3180 3227 -86 207 224 0 20 chr6 43580288 43580337 -145699217 - L2 LINE L2 -2 3311 3264 305 163 51 41 chr6 43581563 43581661 -145697893 + (CAGG)n Simple_repeat Simple_repeat 3 101 0 234 261 34 23 chr6 43583350 43583438 -145696116 - MIR SINE MIR -80 182 94 422 309 53 57 chr6 43583722 43584004 -145695550 + MLT1J2 LTR MaLR 21 301 -149 377 323 106 28 chr6 43584159 43584376 -145695178 + L3 LINE CR1 1272 1505 -72 247 245 46 93 chr6 43584599 43584750 -145694804 + MIR3 SINE MIR 2 145 -63 216 293 29 115 chr6 43585280 43585432 -145694122 + MIR SINE MIR 32 172 -58 850 224 49 37 chr6 43588081 43588327 -145691227 + MIR SINE MIR 14 262 0 206 254 73 0 chr6 43589220 43589275 -145690279 + MIR SINE MIR 108 166 -96 224 333 33 0 chr6 43590094 43590184 -145689370 + MIR SINE MIR 48 140 -68 676 277 66 0 chr6 43590190 43590356 -145689198 + MER45A DNA AcHobo 1 177 -1 343 303 0 5 chr6 43591566 43591762 -145687792 + (CA)n Simple_repeat Simple_repeat 1 194 0 236 302 21 10 chr6 43591814 43591910 -145687644 + (CA)n Simple_repeat Simple_repeat 1 97 0 202 271 0 0 chr6 43592200 43592248 -145687306 + MIR SINE MIR 74 121 -87 315 216 205 0 chr6 43593021 43593119 -145686435 + MIR SINE MIR 38 152 -58 240 143 0 0 chr6 43593245 43593287 -145686267 + (TC)n Simple_repeat Simple_repeat 2 43 0 1362 266 172 10 chr6 43593287 43593322 -145686232 + L2 LINE L2 2149 2177 -1137 2017 153 0 3 chr6 43593322 43593635 -145685919 - AluSx SINE Alu 0 312 1 1362 266 172 10 chr6 43593635 43594226 -145685328 + L2 LINE L2 2177 2877 -437 325 286 90 0 chr6 43594316 43594449 -145685105 - MIR3 SINE MIR -63 145 1 324 308 15 30 chr6 43594814 43594947 -145684607 + G-rich Low_complexity Low_complexity 4 134 0 228 198 25 12 chr6 43594976 43595057 -145684497 + GA-rich Low_complexity Low_complexity 1 82 0 276 252 67 34 chr6 43596469 43596579 -145682975 - MIR3 SINE MIR -72 136 23 571 230 178 0 chr6 43596579 43596731 -145682823 + MER5A DNA MER1_type 4 182 -7 2206 121 0 0 chr6 43597202 43597509 -145682045 + AluSc SINE Alu 1 307 -2 452 256 60 15 chr6 43597766 43597899 -145681655 + MIR3 SINE MIR 9 147 -61 535 238 33 0 chr6 43597977 43598099 -145681455 + L2 LINE L2 3187 3312 -1 288 349 127 0 chr6 43598480 43598606 -145680948 + MIR SINE MIR 118 259 -3 189 171 24 0 chr6 43599170 43599211 -145680343 - MIR SINE MIR -67 141 100 191 157 41 19 chr6 43600870 43600922 -145678632 - MIR SINE MIR -70 138 93 290 304 43 11 chr6 43601177 43601269 -145678285 + MIR SINE MIR 118 212 -50 493 261 128 57 chr6 43601459 43601589 -145677965 - MIR SINE MIR -3 259 107 1845 139 0 46 chr6 43601589 43601892 -145677662 + AluSx SINE Alu 3 291 -21 493 261 128 57 chr6 43601892 43601972 -145677582 - MIR SINE MIR -155 107 34 226 341 146 0 chr6 43602621 43602785 -145676769 - MIR3 SINE MIR -1 207 20 231 146 0 0 chr6 43603640 43603681 -145675873 + (CA)n Simple_repeat Simple_repeat 1 41 0 307 389 0 0 chr6 43603681 43603771 -145675783 + L1MC4 LINE L1 6614 6703 -1339 * 326 366 0 0 chr6 43603712 43603805 -145675749 - L1MC4 LINE L1 -1336 6706 6614 288 242 14 39 chr6 43603926 43604044 -145675510 - MIR SINE MIR -82 126 18 667 238 85 0 chr6 43604431 43604595 -145674959 + MER5B DNA MER1_type 1 178 0 600 257 40 7 chr6 43604598 43604750 -145674804 - MER5B DNA MER1_type -10 168 12 254 321 57 28 chr6 43604784 43604890 -145674664 - MIR SINE MIR -65 197 89 2161 105 3 10 chr6 43604910 43605215 -145674339 - AluSq SINE Alu -10 303 1 305 275 12 0 chr6 43605571 43605651 -145673903 + MER94 DNA DNA 2 82 -52 365 290 59 95 chr6 43605756 43605925 -145673629 + MIR SINE MIR 76 238 -24 292 285 58 80 chr6 43606457 43606594 -145672960 + MIR SINE MIR 10 143 -119 616 318 60 25 chr6 43606641 43606924 -145672630 + L2 LINE L2 3019 3311 -2 1213 166 38 5 chr6 43608220 43608431 -145671123 - MER20 DNA MER1_type -1 218 1 328 259 173 17 chr6 43608456 43608660 -145670894 + MIR SINE MIR 20 261 -1 288 319 88 0 chr6 43609049 43609162 -145670392 + MIR3 SINE MIR 81 203 -5 215 308 0 13 chr6 43609608 43609686 -145669868 + GA-rich Low_complexity Low_complexity 3 79 0 259 303 46 13 chr6 43610614 43610756 -145668798 - MIR SINE MIR -3 205 54 196 268 36 0 chr6 43611987 43612043 -145667511 + L2 LINE L2 3129 3186 -86 776 307 63 8 chr6 43612150 43612388 -145667166 - MIR SINE MIR -5 257 7 401 243 36 18 chr6 43612928 43613031 -145666523 + MIR SINE MIR 26 133 -129 972 211 81 36 chr6 43613031 43613278 -145666276 + MIR SINE MIR 5 262 0 379 230 0 0 chr6 43613653 43613727 -145665827 - MIR SINE MIR -56 152 79 220 243 54 72 chr6 43614079 43614190 -145665364 - L2 LINE L2 -186 3086 2978 216 145 97 16 chr6 43614222 43614284 -145665270 - L2 LINE L2 -26 3246 3180 210 262 0 0 chr6 43614284 43614326 -145665228 + (CA)n Simple_repeat Simple_repeat 1 42 0 769 293 92 9 chr6 43614983 43615212 -145664342 - MIR SINE MIR 0 262 15 476 258 192 0 chr6 43615531 43615713 -145663841 - MIR SINE MIR -17 245 29 244 119 0 51 chr6 43616120 43616179 -145663375 + L1MC4 LINE L1 7029 7084 -958 276 246 148 25 chr6 43616496 43616618 -145662936 - MIR3 SINE MIR -7 201 65 294 328 56 40 chr6 43616851 43617265 -145662289 + L1ME4a LINE L1 5544 5959 -162 504 233 8 17 chr6 43617265 43617385 -145662169 + L2 LINE L2 3194 3312 -1 276 98 24 0 chr6 43618080 43618121 -145661433 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 944 145 0 6 chr6 43618123 43618302 -145661252 + (TCCC)n Simple_repeat Simple_repeat 3 180 0 530 190 8 0 chr6 43618274 43618395 -145661159 + CT-rich Low_complexity Low_complexity 1 122 0 * 334 282 48 24 chr6 43618733 43618857 -145660697 - L2 LINE L2 -14 3299 3173 23 33 0 0 chr6 43619679 43619709 -145659845 + AT_rich Low_complexity Low_complexity 1 30 0 441 54 0 0 chr6 43619921 43619977 -145659577 + (CA)n Simple_repeat Simple_repeat 2 57 0 369 0 0 0 chr6 43620407 43620448 -145659106 + (TG)n Simple_repeat Simple_repeat 1 41 0 201 278 0 0 chr6 43620581 43620635 -145658919 + L2 LINE L2 2932 2985 -328 206 231 0 0 chr6 43621696 43621748 -145657806 + (CA)n Simple_repeat Simple_repeat 1 52 0 360 0 0 0 chr6 43621823 43621863 -145657691 + (CA)n Simple_repeat Simple_repeat 2 41 0 2224 90 0 3 chr6 43622153 43622443 -145657111 - AluSg SINE Alu -21 289 1 339 278 87 8 chr6 43622468 43622594 -145656960 - MIR SINE MIR -113 149 14 462 248 75 6 chr6 43622625 43622782 -145656772 + MIR SINE MIR 6 176 -63 448 238 9 0 chr6 43623006 43623111 -145656443 + MIR SINE MIR 48 153 -109 622 266 18 18 chr6 43623974 43624143 -145655411 + MIR SINE MIR 3 171 -91 275 130 19 0 chr6 43626319 43626373 -145653181 + (CA)n Simple_repeat Simple_repeat 1 55 0 382 173 236 31 chr6 43627405 43627532 -145652022 - L2 LINE L2 -1 3312 3160 687 270 56 0 chr6 43627942 43628157 -145651397 + L1MC4a LINE L1 5659 5885 -1923 327 164 60 129 chr6 43628482 43628598 -145650956 + L1MC5 LINE L1 7611 7718 -243 924 252 35 17 chr6 43629402 43629632 -145649922 + MIR SINE MIR 27 260 -2 311 250 88 0 chr6 43630122 43630190 -145649364 - L2 LINE L2 -1 3312 3239 209 319 82 0 chr6 43630281 43630416 -145649138 + L2 LINE L2 2915 3060 -212 231 61 0 0 chr6 43630938 43630971 -145648583 + (TG)n Simple_repeat Simple_repeat 1 33 0 467 294 211 16 chr6 43631037 43631401 -145648153 - L2 LINE L2 0 3313 2879 296 263 13 0 chr6 43631401 43631477 -145648077 + (TG)n Simple_repeat Simple_repeat 2 78 0 445 340 111 21 chr6 43631986 43632221 -145647333 + MIR SINE MIR 7 262 0 266 367 23 16 chr6 43632232 43632360 -145647194 - MIR SINE MIR -98 164 36 273 297 15 22 chr6 43634569 43634716 -145644838 - L2 LINE L2 0 3272 3126 552 306 85 17 chr6 43634746 43635040 -145644514 + MLT1I LTR MaLR 96 409 0 1073 218 48 4 chr6 43635203 43635432 -145644122 - MIR SINE MIR -1 261 23 214 255 20 0 chr6 43635473 43635524 -145644030 + (CA)n Simple_repeat Simple_repeat 2 53 0 1211 224 108 32 chr6 43636333 43636770 -145642784 + L2 LINE L2 2826 3295 -18 227 355 24 24 chr6 43636780 43636904 -145642650 - MIR SINE MIR -70 192 69 352 129 32 0 chr6 43637758 43637820 -145641734 + MIR SINE MIR 74 137 -71 616 255 111 28 chr6 43638401 43638617 -145640937 - MIR SINE MIR -16 246 13 324 203 54 0 chr6 43638747 43638821 -145640733 + MIR3 SINE MIR 90 167 -41 1752 269 147 38 chr6 43639427 43640141 -145639413 + L2 LINE L2 1936 2774 -540 2281 110 0 0 chr6 43640141 43640451 -145639103 + AluSx SINE Alu 1 310 -2 1752 269 147 38 chr6 43640451 43640655 -145638899 + L2 LINE L2 2774 2954 -360 440 313 0 33 chr6 43640654 43640804 -145638750 + L2 LINE L2 3130 3274 -39 * 500 371 21 49 chr6 43641342 43641730 -145637824 - L2 LINE L2 -7 3265 2889 294 271 47 0 chr6 43641777 43641862 -145637692 - L2 LINE L2 -674 2640 2552 211 323 0 0 chr6 43642208 43642270 -145637284 + MIR SINE MIR 74 135 -73 549 325 118 0 chr6 43642291 43642519 -145637035 - MIR SINE MIR 0 262 8 589 278 96 0 chr6 43643685 43643894 -145635660 - L3 LINE CR1 -68 1509 1281 1737 128 11 29 chr6 43644059 43644340 -145635214 + AluJo SINE Alu 37 312 0 525 271 118 29 chr6 43644394 43644674 -145634880 + L2 LINE L2 2812 3116 -197 416 51 17 0 chr6 43645108 43645167 -145634387 + (CA)n Simple_repeat Simple_repeat 2 61 0 327 25 0 0 chr6 43645401 43645441 -145634113 + (CA)n Simple_repeat Simple_repeat 1 40 0 339 120 0 40 chr6 43647093 43647168 -145632386 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 1574 170 103 0 chr6 43647173 43647455 -145632099 - AluJo SINE Alu -1 311 1 820 276 144 18 chr6 43647782 43648365 -145631189 + L2 LINE L2 2665 3312 -1 257 377 27 0 chr6 43648396 43648542 -145631012 + L2 LINE L2 2584 2733 -581 233 275 0 14 chr6 43648888 43648957 -145630597 + L2 LINE L2 3245 3312 -1 282 160 0 0 chr6 43649242 43649292 -145630262 + (CGTG)n Simple_repeat Simple_repeat 1 50 0 212 355 105 8 chr6 43649737 43649861 -145629693 + MIR3 SINE MIR 8 143 -65 313 241 63 38 chr6 43650263 43650392 -145629162 + MIR SINE MIR 101 232 -30 298 255 179 0 chr6 43650393 43650499 -145629055 - L2 LINE L2 0 3313 3189 1676 279 49 24 chr6 43650596 43651188 -145628366 + L1ME3 LINE L1 5556 6162 0 463 268 152 19 chr6 43651975 43652244 -145627310 + L1ME4a LINE L1 5808 6112 -9 434 247 44 31 chr6 43652420 43652589 -145626965 + MIR3 SINE MIR 14 141 -67 2169 116 10 0 chr6 43653133 43653436 -145626118 + AluSx SINE Alu 1 306 -6 308 291 131 17 chr6 43653572 43653747 -145625807 + L1MC/D LINE L1 5567 5761 -2047 1098 113 6 12 chr6 43654757 43654917 -145624637 - AluY SINE Alu -152 159 1 230 108 0 0 chr6 43655849 43655886 -145623668 - L2 LINE L2 -20 3252 3216 202 200 0 0 chr6 43656061 43656096 -145623458 + (CAGG)n Simple_repeat Simple_repeat 2 36 0 375 23 0 0 chr6 43656749 43656793 -145622761 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 224 325 0 0 chr6 43657097 43657174 -145622380 - MIR SINE MIR -139 123 47 665 254 129 0 chr6 43657659 43657860 -145621694 - MIR SINE MIR -29 233 7 242 280 133 13 chr6 43658069 43658144 -145621410 - MIR3 SINE MIR -31 177 94 512 328 68 14 chr6 43658253 43658546 -145621008 + L2 LINE L2 2910 3218 -95 435 240 206 0 chr6 43658588 43658734 -145620820 + MER5B DNA MER1_type 3 178 0 2066 66 0 0 chr6 43659011 43659268 -145620286 - AluY SINE Alu -18 293 37 219 256 233 0 chr6 43660062 43660148 -145619406 - MIR SINE MIR -108 154 49 964 172 146 39 chr6 43660170 43660403 -145619151 + MIR SINE MIR 2 259 -3 1078 219 38 4 chr6 43660904 43661169 -145618385 - MER58 DNA MER1_type -67 274 1 955 322 103 12 chr6 43661268 43661845 -145617709 - L2 LINE L2 -247 3066 2419 673 239 135 57 chr6 43662334 43662397 -145617157 - MIR SINE MIR -11 251 194 2329 99 3 0 chr6 43662397 43662709 -145616845 - AluSq SINE Alu 0 313 1 673 239 135 57 chr6 43662709 43662875 -145616679 - MIR SINE MIR -68 194 4 184 349 12 36 chr6 43662883 43662966 -145616588 + MIR3 SINE MIR 109 189 -19 2336 72 0 0 chr6 43663052 43663342 -145616212 - AluSx SINE Alu -17 295 6 180 353 141 0 chr6 43664703 43664788 -145614766 - MIR SINE MIR -12 250 154 202 200 0 25 chr6 43665934 43665974 -145613580 + C-rich Low_complexity Low_complexity 2 40 0 309 118 0 0 chr6 43665975 43666026 -145613528 + (CA)n Simple_repeat Simple_repeat 2 52 0 217 313 0 31 chr6 43666181 43666277 -145613277 + GA-rich Low_complexity Low_complexity 4 96 0 255 203 0 0 chr6 43666588 43666647 -145612907 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 276 272 46 4 chr6 43668231 43668322 -145611232 - MIR3 SINE MIR -53 155 77 207 0 0 0 chr6 43668696 43668719 -145610835 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 204 259 0 17 chr6 43669095 43669153 -145610401 + MIR SINE MIR 96 152 -56 254 318 42 34 chr6 43669385 43669531 -145610023 - MIR SINE MIR -62 146 46 229 311 10 29 chr6 43669965 43670068 -145609486 + MER20B DNA MER1_type 62 162 -621 685 233 19 13 chr6 43670134 43670293 -145609261 - MIR SINE MIR -27 235 76 234 263 18 0 chr6 43670326 43670383 -145609171 + MIR3 SINE MIR 149 206 -2 378 0 0 0 chr6 43670596 43670638 -145608916 + (CA)n Simple_repeat Simple_repeat 2 43 0 186 71 0 0 chr6 43670959 43670987 -145608567 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 232 292 0 15 chr6 43671224 43671289 -145608265 + CT-rich Low_complexity Low_complexity 6 69 0 1916 137 0 38 chr6 43671615 43671928 -145607626 - AluJb SINE Alu -11 301 1 183 200 133 27 chr6 43672777 43672852 -145606702 + L2 LINE L2 3188 3270 -2 237 232 0 0 chr6 43673502 43673558 -145605996 + L2 LINE L2 3000 3055 -217 1317 263 69 36 chr6 43673902 43674465 -145605089 - L2 LINE L2 -7 3306 2728 23 0 0 0 chr6 43678303 43678326 -145601228 + GC_rich Low_complexity Low_complexity 1 23 0 200 161 16 0 chr6 43679597 43679659 -145599895 + (CGAG)n Simple_repeat Simple_repeat 2 64 0 259 242 0 0 chr6 43680254 43680316 -145599238 - MIR SINE MIR -66 142 81 259 310 0 23 chr6 43681032 43681119 -145598435 + L2 LINE L2 3188 3272 0 289 271 153 0 chr6 43681492 43681610 -145597944 + MIR SINE MIR 34 169 -93 479 330 20 30 chr6 43681610 43681807 -145597747 + MER91A DNA MER1_type 1 195 -1 288 0 0 0 chr6 43681935 43681967 -145597587 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 339 155 0 0 chr6 43682404 43682488 -145597066 + (CA)n Simple_repeat Simple_repeat 2 85 0 216 323 95 25 chr6 43682676 43682834 -145596720 + MIR3 SINE MIR 3 171 -37 325 254 33 49 chr6 43683074 43683196 -145596358 - L3b LINE CR1 -200 1383 1264 799 272 117 20 chr6 43683852 43684150 -145595404 + MER46C DNA MER2_type 12 338 0 206 208 38 19 chr6 43685333 43685386 -145594168 + CT-rich Low_complexity Low_complexity 5 58 0 205 250 0 0 chr6 43686557 43686601 -145592953 + CT-rich Low_complexity Low_complexity 3 46 0 213 232 49 98 chr6 43687005 43687087 -145592467 - MIR SINE MIR -77 185 108 1491 139 24 124 chr6 43687638 43687977 -145591577 + AluYb8 SINE Alu 1 305 -13 201 297 68 0 chr6 43688184 43688258 -145591296 + MIR SINE MIR 102 180 -82 239 250 0 0 chr6 43688565 43688617 -145590937 + (TGGA)n Simple_repeat Simple_repeat 4 55 0 342 0 0 0 chr6 43688625 43688663 -145590891 + (CA)n Simple_repeat Simple_repeat 2 39 0 514 204 90 66 chr6 43689469 43689562 -145589992 + MER5B DNA MER1_type 1 101 -77 669 125 100 25 chr6 43689562 43689682 -145589872 - FLAM_C SINE Alu -4 129 1 514 204 90 66 chr6 43689682 43689755 -145589799 + MER5B DNA MER1_type 101 171 -7 1947 125 51 0 chr6 43690131 43690455 -145589099 + AluSx SINE Alu 1 339 0 234 296 28 9 chr6 43690653 43690744 -145588810 - MIR SINE MIR -55 153 85 843 165 79 82 chr6 43690789 43691056 -145588498 + L1ME3A LINE L1 5827 6092 -78 1663 173 0 26 chr6 43691087 43691393 -145588161 + AluJo SINE Alu 5 302 -10 1769 106 0 46 chr6 43692304 43692586 -145586968 + AluJb SINE Alu 1 269 -43 1162 138 87 0 chr6 43693005 43693201 -145586353 + AluJb SINE Alu 90 302 -10 37 0 0 21 chr6 43693248 43693271 -145586283 + AT_rich Low_complexity Low_complexity 1 23 -24 1685 158 32 44 chr6 43693271 43693587 -145585967 + AluSx SINE Alu 1 312 0 37 0 0 21 chr6 43693587 43693611 -145585943 + AT_rich Low_complexity Low_complexity 23 47 0 1631 194 3 0 chr6 43693723 43694016 -145585538 + AluJo SINE Alu 3 296 -16 295 320 35 55 chr6 43694038 43694294 -145585260 + HAL1b LINE L1 98 348 -1000 * 546 212 94 89 chr6 43694283 43694433 -145585121 + L1MC4 LINE L1 7309 7462 -580 2300 81 3 0 chr6 43694433 43694731 -145584823 - AluY SINE Alu -12 299 1 546 212 94 89 chr6 43694731 43694783 -145584771 + L1MC4 LINE L1 7462 7512 -530 373 218 83 27 chr6 43694784 43694904 -145584650 - L1MC4 LINE L1 -1339 6703 6614 628 212 17 8 chr6 43694905 43695023 -145584531 - FLAM_A SINE Alu -14 119 1 2060 96 14 0 chr6 43695042 43695335 -145584219 + AluSx SINE Alu 1 297 -15 1233 134 0 0 chr6 43695335 43695514 -145584040 + AluSg/x SINE Alu 132 310 0 306 273 115 14 chr6 43696212 43696351 -145583203 - L2 LINE L2 -609 2705 2553 2123 108 0 40 chr6 43696811 43696989 -145582565 - AluSx SINE Alu 0 312 151 2265 96 0 0 chr6 43696989 43697291 -145582263 - AluSg1 SINE Alu -7 302 1 2123 108 0 40 chr6 43697291 43697437 -145582117 - AluSx SINE Alu -161 151 1 1036 112 6 50 chr6 43698095 43698274 -145581280 - AluSg/x SINE Alu -2 308 138 12885 150 21 10 chr6 43698374 43698496 -145581058 - L1MA2 LINE L1 -76 7647 7528 2111 105 20 0 chr6 43698496 43698792 -145580762 + AluSx SINE Alu 3 304 -8 12885 150 21 10 chr6 43698792 43701374 -145578180 - L1MA2 LINE L1 -195 7528 4890 2767 127 9 41 chr6 43701374 43701537 -145578017 + MSTA LTR MaLR 1 168 -260 2416 58 3 0 chr6 43701537 43701832 -145577722 + AluSp SINE Alu 1 296 -17 2767 127 9 41 chr6 43701832 43702110 -145577444 + MSTA LTR MaLR 168 428 0 12885 150 21 10 chr6 43702110 43702871 -145576683 - L1MA2 LINE L1 -2833 4890 4139 2197 122 0 0 chr6 43702872 43703176 -145576378 - AluSx SINE Alu -6 306 3 1915 157 0 7 chr6 43703178 43703343 -145576211 - AluSx SINE Alu -15 297 133 1667 162 0 8 chr6 43703343 43703634 -145575920 - AluSx SINE Alu 0 312 24 1915 157 0 7 chr6 43703634 43703767 -145575787 - AluSx SINE Alu -179 133 1 2898 103 5 8 chr6 43703778 43704354 -145575200 - L1MA2 LINE L1 -3752 3813 3238 346 322 78 16 chr6 43704457 43704650 -145574904 + L1ME LINE L1 5522 5734 -387 303 28 0 0 chr6 43704650 43704686 -145574868 + (TAA)n Simple_repeat Simple_repeat 1 36 0 346 322 78 16 chr6 43704686 43704734 -145574820 + L1ME LINE L1 5734 5778 -343 1732 188 0 6 chr6 43704747 43705061 -145574493 + AluSx SINE Alu 1 312 0 491 185 0 9 chr6 43705061 43705169 -145574385 + GA-rich Low_complexity Low_complexity 3 109 0 5271 80 28 0 chr6 43705175 43705986 -145573568 - L1M1 LINE L1 -4360 3205 2372 1583 128 0 0 chr6 43705987 43706222 -145573332 - AluSg/x SINE Alu -4 308 74 2169 100 3 7 chr6 43706417 43706727 -145572827 - AluSc SINE Alu 0 309 1 1511 175 94 137 chr6 43706739 43707168 -145572386 - L1ME1 LINE L1 -18 6148 5702 1907 147 0 32 chr6 43707168 43707481 -145572073 + AluJo SINE Alu 3 305 -7 1511 175 94 137 chr6 43707481 43707623 -145571931 - L1ME1 LINE L1 -464 5702 5555 1844 154 13 13 chr6 43707623 43707935 -145571619 - AluJb SINE Alu 0 312 1 1511 175 94 137 chr6 43707935 43708018 -145571536 - L1ME1 LINE L1 -611 5555 5303 761 224 14 0 chr6 43708093 43708236 -145571318 - FRAM SINE Alu -4 172 28 1410 140 126 35 chr6 43708245 43708531 -145571023 - AluSx SINE Alu 0 312 1 1335 160 14 45 chr6 43708535 43708719 -145570835 - L1ME1 LINE L1 -865 5281 5093 1990 102 17 17 chr6 43708719 43709043 -145570511 - AluSx SINE Alu 0 312 3 2225 101 0 0 chr6 43709045 43709343 -145570211 - AluSx SINE Alu -14 298 1 1335 160 14 45 chr6 43709343 43709442 -145570112 - L1ME1 LINE L1 -1054 5092 5004 260 51 0 26 chr6 43709442 43709481 -145570073 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 669 198 24 0 chr6 43709481 43709607 -145569947 - FLAM_C SINE Alu -2 141 13 2410 197 26 91 chr6 43709613 43709713 -145569841 - L1ME1 LINE L1 -1201 4945 4840 2473 54 0 0 chr6 43709713 43710011 -145569543 + AluY SINE Alu 1 298 -13 2410 197 26 91 chr6 43710011 43710284 -145569270 - L1ME1 LINE L1 -1306 4840 4551 2019 211 70 20 chr6 43710284 43710322 -145569232 + MLT1C LTR MaLR 2 37 -430 1716 155 3 56 chr6 43710322 43710461 -145569093 + AluJb SINE Alu 1 146 -166 2181 105 0 3 chr6 43710461 43710757 -145568797 + AluSq SINE Alu 1 295 -18 2074 88 0 18 chr6 43710759 43711076 -145568478 + AluSc SINE Alu 1 312 0 2059 92 0 36 chr6 43711077 43711415 -145568139 + AluY SINE Alu 1 311 0 1716 155 3 56 chr6 43711415 43711591 -145567963 + AluJb SINE Alu 146 305 -7 2019 211 70 20 chr6 43711591 43711992 -145567562 + MLT1C LTR MaLR 37 463 -4 2410 197 26 91 chr6 43711992 43712354 -145567200 - L1ME1 LINE L1 -1595 4551 4257 972 117 0 0 chr6 43712431 43712568 -145566986 + AluSx SINE Alu 1 137 -176 2546 58 0 0 chr6 43712906 43713216 -145566338 + AluY SINE Alu 1 310 -1 1025 144 0 39 chr6 43714116 43714130 -145565424 + AluSx SINE Alu 118 131 -181 216 0 0 0 chr6 43714130 43714154 -145565400 + (CA)n Simple_repeat Simple_repeat 1 24 0 1025 144 0 39 chr6 43714154 43714320 -145565234 + AluSx SINE Alu 131 291 -21 2237 105 0 0 chr6 43714335 43714640 -145564914 - AluSg SINE Alu -5 305 1 2188 109 0 0 chr6 43714640 43714942 -145564612 - AluSg SINE Alu -8 302 1 463 336 28 49 chr6 43714951 43715275 -145564279 - L1ME LINE L1 -343 5778 5462 1538 129 0 9 chr6 43715276 43715501 -145564053 + AluSx SINE Alu 1 223 -89 436 179 60 60 chr6 43715577 43715694 -145563860 + AluJo/FLAM SINE Alu 10 126 -186 1446 155 0 12 chr6 43715694 43715775 -145563779 + AluJo SINE Alu 55 135 -177 1888 70 4 16 chr6 43715775 43716032 -145563522 + AluSp SINE Alu 50 303 -10 1446 155 0 12 chr6 43716032 43716195 -145563359 + AluJo SINE Alu 135 296 -16 237 297 143 6 chr6 43716351 43716526 -145563028 - LTR33 LTR ERVL 0 521 323 323 279 26 30 chr6 43716720 43716855 -145562699 - MIR SINE MIR -65 143 45 32 57 0 0 chr6 43717266 43717319 -145562235 + GC_rich Low_complexity Low_complexity 1 53 0 345 240 34 126 chr6 43717875 43718050 -145561504 - L2 LINE L2 -4 3309 3151 419 216 10 0 chr6 43718053 43718155 -145561399 - MER33 DNA MER1_type -1 362 260 2115 97 21 0 chr6 43718155 43718443 -145561111 - AluSp SINE Alu -19 294 1 639 185 53 106 chr6 43718445 43718634 -145560920 - FRAM SINE Alu 0 176 1 974 235 9 0 chr6 43718634 43718864 -145560690 - MER33 DNA MER1_type -92 232 1 649 62 0 0 chr6 43719512 43719592 -145559962 + AluSp/q SINE Alu 214 293 -20 226 324 0 27 chr6 43720566 43720677 -145558877 + C-rich Low_complexity Low_complexity 4 111 0 233 326 12 12 chr6 43720684 43720770 -145558784 - L2 LINE L2 -3 3269 3184 209 156 0 44 chr6 43720823 43720868 -145558686 + C-rich Low_complexity Low_complexity 4 46 0 1787 134 0 75 chr6 43721309 43721520 -145558034 + AluSx SINE Alu 1 181 -131 2196 99 3 0 chr6 43721520 43721814 -145557740 + AluSg SINE Alu 2 296 -14 1787 134 0 75 chr6 43721814 43721922 -145557632 + AluSx SINE Alu 181 296 -16 2345 86 0 0 chr6 43721922 43722224 -145557330 + AluSg SINE Alu 1 302 -8 2243 91 3 0 chr6 43722880 43723176 -145556378 + AluSp SINE Alu 1 297 -16 1076 232 107 40 chr6 43723345 43723605 -145555949 - L2 LINE L2 0 3313 3072 1573 151 23 8 chr6 43723605 43723864 -145555690 - AluSx SINE Alu -20 292 30 1076 232 107 40 chr6 43723864 43724189 -145555365 - L2 LINE L2 -241 3072 2701 2289 86 3 0 chr6 43724535 43724838 -145554716 - AluSp SINE Alu -9 304 1 1976 134 7 7 chr6 43724840 43725145 -145554409 - AluSx SINE Alu -7 305 1 181 314 25 68 chr6 43725337 43725455 -145554099 + L2 LINE L2 3107 3219 -94 2130 110 0 0 chr6 43725616 43725916 -145553638 - AluSx SINE Alu -12 300 1 341 230 35 0 chr6 43726404 43726491 -145553063 - MER94 DNA DNA -14 120 31 1440 237 52 2 chr6 43726495 43726963 -145552591 + L1ME3A LINE L1 5589 6118 -52 289 276 122 10 chr6 43727401 43727499 -145552055 + L2 LINE L2 3200 3308 -5 318 208 30 89 chr6 43729070 43729171 -145550383 + MIR SINE MIR 20 114 -148 2371 47 7 3 chr6 43729266 43729563 -145549991 - AluY SINE Alu -13 298 1 334 297 88 34 chr6 43729833 43729981 -145549573 - L2 LINE L2 -3 3269 3114 1455 280 94 4 chr6 43730105 43730573 -145548981 + MER97a DNA MER1_type? 7 516 -378 2145 94 0 10 chr6 43730825 43731123 -145548431 - AluSx SINE Alu -17 295 1 24 0 0 0 chr6 43731339 43731363 -145548191 + AT_rich Low_complexity Low_complexity 1 24 0 2267 86 0 0 chr6 43731371 43731662 -145547892 - AluSc SINE Alu -18 291 1 1653 166 57 7 chr6 43731877 43732173 -145547381 + AluJb SINE Alu 2 312 0 546 265 69 11 chr6 43732352 43732541 -145547013 - L2 LINE L2 -218 3054 2855 919 251 224 19 chr6 43732565 43732931 -145546623 - MLT1J LTR MaLR -4 507 67 283 306 121 7 chr6 43732976 43733070 -145546484 - L2 LINE L2 -528 2786 2704 2216 106 0 0 chr6 43733070 43733372 -145546182 + AluSg SINE Alu 1 302 -8 283 306 121 7 chr6 43733372 43733576 -145545978 - L2 LINE L2 -610 2704 2357 216 0 0 0 chr6 43733576 43733600 -145545954 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1437 181 11 18 chr6 43733604 43733885 -145545669 - AluJo SINE Alu -33 279 1 420 292 179 15 chr6 43733887 43734001 -145545553 - L2 LINE L2 -954 2360 2266 7570 120 38 35 chr6 43734001 43735273 -145544281 - MER52C LTR ERV1 0 1278 4 420 292 179 15 chr6 43735273 43735483 -145544071 - L2 LINE L2 -1048 2266 1983 558 242 34 7 chr6 43735757 43735822 -145543732 + MLT1J LTR MaLR 1 63 -448 1002 142 80 199 chr6 43735822 43735979 -145543575 + AluJo SINE Alu 1 175 -127 2009 111 17 0 chr6 43735979 43736293 -145543261 + AluSp SINE Alu 1 319 0 1002 142 80 199 chr6 43736293 43736313 -145543241 + AluJo SINE Alu 175 196 -106 2445 55 0 3 chr6 43736313 43736620 -145542934 + AluY SINE Alu 1 306 -5 1002 142 80 199 chr6 43736620 43736763 -145542791 + AluJo SINE Alu 196 286 -16 240 35 0 0 chr6 43736763 43736792 -145542762 + (CATA)n Simple_repeat Simple_repeat 2 30 0 1002 142 80 199 chr6 43736792 43736803 -145542751 + AluJo SINE Alu 286 297 -5 558 242 34 7 chr6 43736803 43736886 -145542668 + MLT1J LTR MaLR 63 153 -358 * 642 191 155 22 chr6 43736883 43736907 -145542647 - LTR40b LTR ERVL -231 288 269 2109 98 11 0 chr6 43736907 43737194 -145542360 - AluSx SINE Alu -22 290 1 642 191 155 22 chr6 43737194 43737432 -145542122 - LTR40b LTR ERVL -250 269 1 639 311 82 10 chr6 43737520 43737804 -145541750 + MLT1L LTR MaLR 267 511 0 209 292 83 14 chr6 43737968 43738040 -145541514 + L3b LINE CR1 1505 1581 -2 412 263 42 8 chr6 43739242 43739360 -145540194 - MIR SINE MIR -14 248 127 1684 151 41 20 chr6 43739434 43739726 -145539828 - AluJb SINE Alu -14 298 1 2207 201 117 10 chr6 43739985 43740473 -145539081 + MLT1F LTR MaLR 1 540 -2 191 182 0 0 chr6 43740547 43740580 -145538974 + L2 LINE L2 2245 2277 -1037 946 221 47 71 chr6 43740740 43741197 -145538357 - MLT1J LTR MaLR -21 490 1 201 118 0 0 chr6 43741255 43741289 -145538265 - MIR SINE MIR -66 142 109 1699 151 3 24 chr6 43741492 43741783 -145537771 + AluSx SINE Alu 1 285 -27 570 15 0 0 chr6 43741783 43741850 -145537704 + (TA)n Simple_repeat Simple_repeat 2 68 0 183 114 0 0 chr6 43741852 43741887 -145537667 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 2241 71 0 29 chr6 43742014 43742322 -145537232 + AluY SINE Alu 1 299 -12 618 188 0 83 chr6 43742447 43742591 -145536963 - FLAM_A SINE Alu -1 132 1 357 169 0 0 chr6 43742704 43742763 -145536791 + AluS SINE Alu 1 59 -249 1550 62 0 0 chr6 43742786 43742978 -145536576 - AluY SINE Alu -119 192 1 183 114 0 0 chr6 43743105 43743140 -145536414 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1505 133 4 27 chr6 43743151 43743227 -145536327 + AluJb SINE Alu 60 136 -176 2071 118 7 10 chr6 43743227 43743359 -145536195 + AluSx SINE Alu 2 133 -179 2051 110 7 0 chr6 43743359 43743659 -145535895 + AluSg SINE Alu 1 302 -8 2071 118 7 10 chr6 43743659 43743830 -145535724 + AluSx SINE Alu 133 304 -8 1505 133 4 27 chr6 43743830 43744009 -145535545 + AluJb SINE Alu 136 309 -3 248 0 31 0 chr6 43744009 43744041 -145535513 + (TA)n Simple_repeat Simple_repeat 1 33 0 2262 96 0 16 chr6 43744243 43744556 -145534998 + AluSq SINE Alu 1 308 -5 207 388 10 10 chr6 43745500 43745598 -145533956 + MIR SINE MIR 46 143 -65 1742 174 0 7 chr6 43747689 43747982 -145531572 - AluJo SINE Alu -19 293 3 1694 136 19 48 chr6 43747985 43748152 -145531402 - AluJb SINE Alu -12 300 145 1778 97 60 8 chr6 43748152 43748420 -145531134 - AluSp SINE Alu -14 299 18 1694 136 19 48 chr6 43748420 43748561 -145530993 - AluJb SINE Alu -167 145 1 2241 94 0 0 chr6 43748640 43748937 -145530617 - AluSg SINE Alu -13 297 1 2245 105 0 0 chr6 43748989 43749295 -145530259 - AluSg SINE Alu -4 306 1 1008 305 91 14 chr6 43749306 43749936 -145529618 - L1ME3A LINE L1 -203 5967 5290 306 0 0 0 chr6 43749948 43749982 -145529572 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2221 90 10 0 chr6 43749998 43750298 -145529256 - AluSp SINE Alu -10 303 1 870 153 0 0 chr6 43750298 43750429 -145529125 - AluSq/x SINE Alu -178 135 5 2112 82 4 0 chr6 43750438 43750761 -145528793 - AluY SINE Alu 0 326 3 1750 124 84 0 chr6 43750763 43751036 -145528518 - AluSg SINE Alu -14 296 1 982 177 6 11 chr6 43751036 43751217 -145528337 - AluJo SINE Alu -12 300 121 200 132 26 0 chr6 43751266 43751304 -145528250 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 749 195 0 0 chr6 43752732 43752850 -145526704 - AluJo SINE Alu -188 124 7 272 198 60 102 chr6 43752859 43753026 -145526528 - L1MC5 LINE L1 -36 7925 7766 2297 87 0 3 chr6 43753057 43753356 -145526198 - AluY SINE Alu -13 298 1 375 358 38 7 chr6 43753356 43753644 -145525910 - L1MEd LINE L1 -3289 3093 2797 1895 131 0 4 chr6 43753647 43753922 -145525632 + AluJb SINE Alu 6 279 -33 237 65 0 0 chr6 43753922 43753953 -145525601 + (CAA)n Simple_repeat Simple_repeat 2 32 0 326 228 6 96 chr6 43753958 43753998 -145525556 - L1MEd LINE L1 -3785 2597 2555 2047 130 0 0 chr6 43753998 43754298 -145525256 + AluSx SINE Alu 1 300 -12 326 228 6 96 chr6 43754298 43754424 -145525130 - L1MEd LINE L1 -3827 2555 2446 2181 103 0 3 chr6 43754786 43755088 -145524466 - AluY SINE Alu -8 303 3 1315 79 0 0 chr6 43755225 43755402 -145524152 + AluY SINE Alu 135 311 0 1868 147 7 3 chr6 43755491 43755784 -145523770 - AluJb SINE Alu -18 294 1 2348 85 0 0 chr6 43755865 43756171 -145523383 - AluY SINE Alu -5 306 1 1176 140 55 0 chr6 43756173 43756337 -145523217 - AluSg/x SINE Alu -17 295 117 261 0 0 0 chr6 43756337 43756366 -145523188 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1176 140 55 0 chr6 43756366 43756401 -145523153 - AluSg/x SINE Alu -195 117 85 347 88 0 19 chr6 43756401 43756538 -145523016 - AluY SINE Alu -52 249 59 1272 129 0 10 chr6 43756540 43756733 -145522821 - AluSx SINE Alu -121 191 1 1048 278 40 40 chr6 43756790 43757193 -145522361 - L1ME3A LINE L1 -229 5941 5539 318 326 0 31 chr6 43757210 43757308 -145522246 - L1MEd LINE L1 -4674 1710 1616 25 0 0 0 chr6 43757318 43757343 -145522211 + AT_rich Low_complexity Low_complexity 1 25 0 1884 143 3 27 chr6 43757343 43757644 -145521910 - AluSg SINE Alu -16 294 1 571 310 92 45 chr6 43757751 43757820 -145521734 - L1MEd LINE L1 -4866 1506 1442 2311 95 0 19 chr6 43757820 43757997 -145521557 - AluSx SINE Alu -2 310 140 243 0 0 0 chr6 43758007 43758034 -145521520 + (TA)n Simple_repeat Simple_repeat 1 27 0 2378 56 0 13 chr6 43758034 43758329 -145521225 - AluSx SINE Alu -19 293 1 2311 95 0 19 chr6 43758329 43758467 -145521087 - AluSx SINE Alu -172 140 1 571 310 92 45 chr6 43758467 43759062 -145520492 - L1MEd LINE L1 -4930 1442 811 436 244 83 34 chr6 43759345 43759550 -145520004 + MLT1K LTR MaLR 215 429 -159 189 0 0 0 chr6 43759713 43759734 -145519820 + (TCTA)n Simple_repeat Simple_repeat 4 24 0 1880 156 3 0 chr6 43759735 43760023 -145519531 - AluJb SINE Alu -23 289 1 1891 136 31 0 chr6 43760458 43760745 -145518809 - AluSx SINE Alu -16 296 1 2361 53 0 17 chr6 43760756 43761055 -145518499 - AluY SINE Alu -16 295 2 2219 98 3 0 chr6 43761065 43761362 -145518192 - AluSx SINE Alu -14 298 1 1976 137 0 0 chr6 43761373 43761701 -145517853 - AluSx SINE Alu 0 328 1 838 158 23 0 chr6 43761710 43761843 -145517711 - AluJo SINE Alu -176 136 1 363 182 34 34 chr6 43761917 43762005 -145517549 + MIR SINE MIR 98 185 -77 417 214 24 0 chr6 43762303 43762387 -145517167 + MIR SINE MIR 79 164 -98 1610 118 0 0 chr6 43762421 43762642 -145516912 - AluSq SINE Alu -91 222 2 265 122 0 0 chr6 43762643 43762684 -145516870 + MIR SINE MIR 153 193 -69 3801 166 171 16 chr6 43762685 43764078 -145515476 + MER52A LTR ERV1 1 1755 0 2090 119 0 3 chr6 43764137 43764432 -145515122 - AluSx SINE Alu -15 297 4 2013 78 0 106 chr6 43766217 43766548 -145513006 - AluSg SINE Alu -4 306 11 539 258 46 7 chr6 43766566 43766717 -145512837 + MIR SINE MIR 106 262 0 13504 142 40 32 chr6 43766778 43768048 -145511506 + L1M3 LINE L1 1 1259 -6306 3580 84 30 14 chr6 43768048 43768550 -145511004 - MER75 DNA T2_type 0 514 5 13504 142 40 32 chr6 43768550 43769007 -145510547 + L1M3 LINE L1 1259 1711 -5854 483 18 0 0 chr6 43769007 43769063 -145510491 + (GGGAGA)n Simple_repeat Simple_repeat 5 60 0 13504 142 40 32 chr6 43769063 43769674 -145509880 + L1M3 LINE L1 1711 2359 -5206 2215 110 0 0 chr6 43769679 43769980 -145509574 - AluSp SINE Alu -12 301 1 1092 139 38 116 chr6 43770009 43770159 -145509395 + L1M3 LINE L1 3597 3757 -3845 837 159 0 36 chr6 43770159 43770297 -145509257 + AluJo SINE Alu 1 133 -169 1092 139 38 116 chr6 43770297 43770493 -145509061 + L1M3 LINE L1 3757 7010 -592 373 174 29 0 chr6 43770493 43770562 -145508992 + AluJo SINE Alu 119 189 -113 1975 88 0 0 chr6 43770662 43770962 -145508592 + AluY SINE Alu 22 321 0 1018 242 37 86 chr6 43770965 43771177 -145508377 - L1MEc LINE L1 -4839 1445 1224 2196 107 3 3 chr6 43771177 43771487 -145508067 - AluSp SINE Alu -3 310 1 1018 242 37 86 chr6 43771487 43771843 -145507711 - L1MEc LINE L1 -5060 1224 837 273 128 0 0 chr6 43771843 43771882 -145507672 - Alu SINE Alu -263 39 1 2151 104 7 0 chr6 43771889 43772186 -145507368 - AluSq SINE Alu -14 299 1 537 208 167 0 chr6 43772196 43772340 -145507214 - L1MEc LINE L1 -5581 815 648 2046 110 0 3 chr6 43772812 43773104 -145506450 + AluSx SINE Alu 1 291 -21 222 289 7 37 chr6 43773425 43773560 -145505994 + (CCCCG)n Simple_repeat Simple_repeat 4 134 0 247 256 12 23 chr6 43777672 43777758 -145501796 + G-rich Low_complexity Low_complexity 6 90 0 254 250 58 58 chr6 43778826 43778930 -145500624 + MIR3 SINE MIR 94 197 -11 354 252 203 0 chr6 43780294 43780417 -145499137 + MIR SINE MIR 55 202 -60 576 247 163 40 chr6 43781243 43781494 -145498060 + MER5C DNA MER1_type 1 282 -42 184 305 53 76 chr6 43783115 43783246 -145496308 + MIR SINE MIR 93 220 -42 783 161 0 29 chr6 43783304 43783441 -145496113 + FLAM_C SINE Alu 1 133 0 221 200 118 47 chr6 43784230 43784315 -145495239 - MIR SINE MIR -89 119 29 26 64 0 0 chr6 43784419 43784466 -145495088 + GC_rich Low_complexity Low_complexity 1 47 0 1571 88 0 5 chr6 43784972 43785189 -145494365 + AluSg/x SINE Alu 91 306 -4 830 272 19 27 chr6 43785192 43785449 -145494105 - L1ME1 LINE L1 -7 6159 5905 404 198 12 12 chr6 43785452 43785538 -145494016 - L1M4 LINE L1 -1159 4987 4902 355 122 61 37 chr6 43785542 43785624 -145493930 - L1M4 LINE L1 -2171 3975 3892 1412 141 8 17 chr6 43785628 43785862 -145493692 + AluJo SINE Alu 6 237 -75 4328 147 156 89 chr6 43785869 43787160 -145492394 - pTR5 LTR ERV1 0 2438 741 374 153 0 0 chr6 43787171 43787230 -145492324 + AluJo SINE Alu 239 297 -3 291 342 86 13 chr6 43787307 43787459 -145492095 + MIR SINE MIR 38 200 -62 479 191 71 64 chr6 43787482 43787623 -145491931 - L1MCa LINE L1 -2270 4156 4015 1928 145 0 7 chr6 43787624 43787928 -145491626 - AluJb SINE Alu -10 302 1 374 229 0 0 chr6 43787928 43787998 -145491556 - AluSp SINE Alu -100 203 134 180 0 0 0 chr6 43788013 43788033 -145491521 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 845 145 14 0 chr6 43788033 43788160 -145491394 - FRAM SINE Alu -163 149 18 735 167 68 12 chr6 43788160 43788322 -145491232 - L1M4 LINE L1 -2403 3743 3573 806 256 0 28 chr6 43788324 43788335 -145491219 - AluJo/FRAM SINE Alu -1 311 301 1900 102 65 14 chr6 43788335 43788628 -145490926 - AluSx SINE Alu 0 312 5 806 256 0 28 chr6 43788628 43788796 -145490758 - AluJo/FRAM SINE Alu -11 301 137 2155 111 0 13 chr6 43788801 43789107 -145490447 - AluSc SINE Alu -7 302 1 2565 233 63 20 chr6 43789108 43789183 -145490371 - L1M4 LINE L1 -2572 3574 3504 2001 117 3 13 chr6 43789183 43789482 -145490072 - AluSq SINE Alu -17 296 1 2565 233 63 20 chr6 43789482 43789798 -145489756 - L1M4 LINE L1 -2642 3504 3203 2104 99 7 7 chr6 43789798 43790090 -145489464 - AluSx SINE Alu -20 292 1 2565 233 63 20 chr6 43790090 43790526 -145489028 - L1M4 LINE L1 -2943 3203 2711 1013 183 48 39 chr6 43790511 43790741 -145488813 - L1MCa LINE L1 -2419 4007 3776 * 812 216 12 75 chr6 43790736 43790884 -145488670 - L1MCa LINE L1 -3381 3045 2918 * 1962 92 65 0 chr6 43790884 43791176 -145488378 - AluSp SINE Alu -1 312 2 812 216 12 75 chr6 43791176 43791281 -145488273 - L1MCa LINE L1 -3508 2918 2808 286 209 30 0 chr6 43791291 43791358 -145488196 + L1MA7 LINE L1 5898 5966 -325 1516 68 0 5 chr6 43791362 43791554 -145488000 + AluY SINE Alu 1 191 -120 488 90 0 0 chr6 43791554 43791621 -145487933 + AluY SINE Alu 236 302 -10 532 171 8 14 chr6 43791621 43791840 -145487714 + L1MA7 LINE L1 5964 6287 -4 1339 189 34 45 chr6 43791875 43792166 -145487388 + AluJb SINE Alu 1 288 -24 269 223 136 10 chr6 43792167 43792270 -145487284 - L1M4 LINE L1 -470 5714 5599 519 239 5 0 chr6 43792741 43792863 -145486691 - L1M4 LINE L1 -564 5600 5473 841 281 30 7 chr6 43792869 43793139 -145486415 - L1MCa LINE L1 -3628 2798 2523 926 66 0 0 chr6 43793142 43793263 -145486291 - AluY SINE Alu -8 303 183 1854 50 0 0 chr6 43793264 43793485 -145486069 - AluY SINE Alu -90 221 1 2184 102 3 0 chr6 43793525 43793829 -145485725 - AluSx SINE Alu -7 305 1 229 241 58 58 chr6 43794078 43794165 -145485389 - L2 LINE L2 -3 3269 3183 200 159 0 45 chr6 43794216 43794260 -145485294 + C-rich Low_complexity Low_complexity 5 46 0 1348 148 0 10 chr6 43794702 43794911 -145484643 + AluSx SINE Alu 1 207 -105 2308 91 3 0 chr6 43794913 43795221 -145484333 + AluSg SINE Alu 2 310 0 2439 50 0 0 chr6 43795226 43795528 -145484026 + AluY SINE Alu 1 302 -9 1368 199 3 27 chr6 43795538 43795835 -145483719 + AluJo SINE Alu 1 290 -22 389 218 20 0 chr6 43795836 43795937 -145483617 + L1MEc LINE L1 2245 2347 -4049 1474 61 0 0 chr6 43795940 43796141 -145483413 - AluY SINE Alu 0 302 102 210 51 115 0 chr6 43796141 43796219 -145483335 + (TA)n Simple_repeat Simple_repeat 1 87 0 319 302 38 9 chr6 43796222 43796328 -145483226 - L1MCa LINE L1 -4307 2119 2011 333 0 0 0 chr6 43796364 43796398 -145483156 + (TG)n Simple_repeat Simple_repeat 1 71 0 333 0 0 0 chr6 43796398 43796435 -145483119 + (TG)n Simple_repeat Simple_repeat 2 38 0 252 0 0 0 chr6 43796830 43796858 -145482696 + (CA)n Simple_repeat Simple_repeat 1 28 0 1060 139 11 6 chr6 43796858 43797038 -145482516 + AluSq SINE Alu 130 310 -3 783 236 5 31 chr6 43797048 43797239 -145482315 + AluJo SINE Alu 1 186 -126 502 177 0 15 chr6 43797239 43797336 -145482218 - AluJ/FLAM SINE Alu -233 69 1 28 22 0 22 chr6 43797343 43797370 -145482184 + AT_rich Low_complexity Low_complexity 1 28 -17 1774 159 3 0 chr6 43797370 43797660 -145481894 - AluJo SINE Alu -21 291 1 28 22 0 22 chr6 43797660 43797678 -145481876 + AT_rich Low_complexity Low_complexity 28 45 0 2606 39 0 3 chr6 43798490 43798801 -145480753 - AluY SINE Alu -1 310 1 206 384 31 45 chr6 43799642 43799866 -145479688 - L2 LINE L2 -343 2971 2751 289 242 20 30 chr6 43799912 43800011 -145479543 - L2 LINE L2 -1358 1956 1859 1951 84 0 18 chr6 43800100 43800374 -145479180 + AluSc SINE Alu 28 296 -13 2026 123 0 7 chr6 43800534 43800826 -145478728 - AluSx SINE Alu -22 290 1 350 248 69 0 chr6 43800936 43801037 -145478517 + MIR3 SINE MIR 93 200 -8 183 80 0 0 chr6 43801460 43801485 -145478069 + (T)n Simple_repeat Simple_repeat 1 25 0 1941 108 31 14 chr6 43801645 43801933 -145477621 - AluSx SINE Alu -12 300 8 563 170 9 0 chr6 43801935 43802041 -145477513 - FRAM SINE Alu -14 162 56 239 267 44 105 chr6 43802051 43802366 -145477188 - L1M4 LINE L1 -1221 4925 4630 219 291 106 34 chr6 43802533 43802712 -145476842 + L2 LINE L2 2721 2912 -402 260 276 196 5 chr6 43802950 43803095 -145476459 - MIR SINE MIR -66 196 21 2383 79 0 0 chr6 43808792 43809097 -145470457 - AluSg SINE Alu -5 305 1 22 0 0 0 chr6 43810127 43810149 -145469405 + AT_rich Low_complexity Low_complexity 1 22 0 2015 145 3 0 chr6 43811671 43811975 -145467579 - AluSx SINE Alu -7 305 1 2111 94 42 0 chr6 43812384 43812671 -145466883 - AluSq SINE Alu -12 301 3 27 0 0 0 chr6 43813535 43813562 -145465992 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr6 43813961 43813988 -145465566 + AT_rich Low_complexity Low_complexity 1 27 0 1857 141 3 0 chr6 43814879 43815162 -145464392 + AluJb SINE Alu 1 284 -28 494 254 144 35 chr6 43815549 43815750 -145463804 + MIR SINE MIR 5 227 -35 1138 229 78 14 chr6 43815832 43816116 -145463438 - AluJb SINE Alu 0 302 1 710 165 18 0 chr6 43816174 43816283 -145463271 + AluJb SINE Alu 171 281 -31 250 234 0 65 chr6 43816297 43816374 -145463180 - L1ME LINE L1 -305 5816 5745 939 154 0 0 chr6 43816386 43816556 -145462998 - AluSg/x SINE Alu 0 303 134 2080 115 3 0 chr6 43816556 43816851 -145462703 - AluSx SINE Alu -14 298 3 243 314 88 42 chr6 43816854 43817093 -145462461 - L1ME LINE L1 -393 5728 5479 2017 110 11 0 chr6 43817107 43817389 -145462165 - AluSx SINE Alu -19 293 9 313 260 67 58 chr6 43817414 43817637 -145461917 - L1ME LINE L1 -293 5828 5604 47 67 0 0 chr6 43818164 43818253 -145461301 + AT_rich Low_complexity Low_complexity 1 89 0 209 313 70 17 chr6 43818323 43818438 -145461116 + L2 LINE L2 3181 3301 -12 1589 205 3 0 chr6 43818647 43818954 -145460600 - AluJo SINE Alu -2 310 3 200 255 0 0 chr6 43819526 43819577 -145459977 + C-rich Low_complexity Low_complexity 6 56 0 1543 192 11 3 chr6 43819594 43819880 -145459674 - AluJb SINE Alu -24 288 1 1018 96 0 7 chr6 43819880 43820016 -145459538 - AluJb SINE Alu -177 135 1 21 0 0 0 chr6 43820019 43820040 -145459514 + AT_rich Low_complexity Low_complexity 1 21 0 2127 109 3 0 chr6 43820040 43820334 -145459220 + AluSx SINE Alu 2 296 -16 760 196 0 15 chr6 43820387 43820520 -145459034 - FLAM_C SINE Alu -11 132 2 23 0 0 0 chr6 43820708 43820731 -145458823 + AT_rich Low_complexity Low_complexity 1 23 0 1747 149 16 13 chr6 43820835 43821144 -145458410 + AluJo SINE Alu 1 310 -2 1358 191 11 15 chr6 43821614 43821876 -145457678 + AluJo SINE Alu 35 295 -17 1976 121 0 0 chr6 43821886 43822166 -145457388 + AluJb SINE Alu 1 280 -32 309 51 0 0 chr6 43822171 43822210 -145457344 + (CATA)n Simple_repeat Simple_repeat 2 40 0 265 346 0 30 chr6 43822223 43822324 -145457230 - L2 LINE L2 0 3313 3216 2220 81 7 3 chr6 43822530 43822826 -145456728 - AluY SINE Alu -14 297 1 1799 91 35 97 chr6 43823142 43823325 -145456229 - AluSg SINE Alu -11 299 143 261 0 0 0 chr6 43823325 43823354 -145456200 + (TA)n Simple_repeat Simple_repeat 1 29 0 1799 91 35 97 chr6 43823354 43823489 -145456065 - AluSg SINE Alu -167 143 1 1768 148 14 7 chr6 43823674 43823971 -145455583 + AluJb SINE Alu 1 299 -13 690 161 40 16 chr6 43824215 43824339 -145455215 - FLAM_A SINE Alu -6 127 1 1639 101 21 116 chr6 43825027 43825220 -145454334 - AluJo SINE Alu -6 296 145 1935 125 17 0 chr6 43825220 43825509 -145454045 + AluSx SINE Alu 3 296 -16 1639 101 21 116 chr6 43825509 43825642 -145453912 - AluJo SINE Alu -157 145 1 342 302 0 0 chr6 43826613 43826742 -145452812 - L1ME3A LINE L1 -287 5883 5755 1646 233 125 24 chr6 43826872 43827369 -145452185 + MLT1H LTR MaLR 3 549 0 207 0 0 0 chr6 43827625 43827648 -145451906 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1421 151 9 0 chr6 43827658 43827883 -145451671 - AluJb SINE Alu -44 268 42 408 216 75 114 chr6 43827888 43828045 -145451509 - L1ME3A LINE L1 -903 5243 5096 2170 90 7 10 chr6 43828045 43828355 -145451199 + AluSx SINE Alu 1 309 -3 408 216 75 114 chr6 43828355 43828424 -145451130 - L1ME3A LINE L1 -1050 5096 5026 310 330 85 45 chr6 43828489 43828665 -145450889 - L1ME3A LINE L1 -1331 4815 4633 782 182 6 94 chr6 43828679 43828860 -145450694 - AluJb SINE Alu -65 247 83 765 259 68 46 chr6 43828866 43829280 -145450274 - L1ME3A LINE L1 -1812 4334 3912 1206 208 14 0 chr6 43829348 43829560 -145449994 + MER58A DNA MER1_type 1 215 -9 1999 128 10 3 chr6 43829565 43829870 -145449684 + AluSq SINE Alu 1 307 -6 797 177 15 0 chr6 43829880 43830010 -145449544 + FLAM_C SINE Alu 2 133 0 188 32 97 0 chr6 43830010 43830041 -145449513 + GA-rich Low_complexity Low_complexity 1 34 0 1909 142 3 40 chr6 43830242 43830566 -145448988 - AluJb SINE Alu 0 312 1 2221 117 3 7 chr6 43830570 43830878 -145448676 - AluSx SINE Alu -5 307 1 921 278 91 60 chr6 43830920 43831858 -145447696 - L1ME3A LINE L1 -2751 3395 2429 738 198 8 0 chr6 43832725 43832851 -145446703 + FLAM_A SINE Alu 4 130 -3 21 57 0 0 chr6 43832851 43832886 -145446668 + AT_rich Low_complexity Low_complexity 1 35 0 1839 140 11 0 chr6 43832891 43833176 -145446378 + AluJo SINE Alu 1 288 -24 927 111 100 6 chr6 43833251 43833431 -145446123 + L1MC1 LINE L1 2268 2464 -3962 2273 115 3 6 chr6 43833431 43833744 -145445810 + AluSx SINE Alu 1 312 0 1710 171 3 20 chr6 43833768 43834073 -145445481 + AluJb SINE Alu 1 300 -12 7635 213 100 68 chr6 43834073 43834693 -145444861 + L1MC1 LINE L1 2462 3061 -3365 957 150 0 0 chr6 43834693 43834826 -145444728 + FLAM_C SINE Alu 1 133 0 7635 213 100 68 chr6 43834826 43835545 -145444009 + L1MC1 LINE L1 3061 3755 -2671 1645 188 3 3 chr6 43835545 43835842 -145443712 + AluJo SINE Alu 1 297 -15 2108 116 3 0 chr6 43835842 43836126 -145443428 + AluSx SINE Alu 1 285 -27 7635 213 100 68 chr6 43835843 43836138 -145443416 + L1MC1 LINE L1 3755 4039 -2387 189 0 0 0 chr6 43836138 43836159 -145443395 + (CCA)n Simple_repeat Simple_repeat 1 21 0 7635 213 100 68 chr6 43836159 43837691 -145441863 + L1MC1 LINE L1 4039 5443 -983 1237 169 67 24 chr6 43837689 43837713 -145441841 + L1MC1 LINE L1 5732 5754 -729 * 2247 107 3 3 chr6 43837713 43838012 -145441542 + AluSx SINE Alu 1 299 -13 1237 169 67 24 chr6 43838012 43838237 -145441317 + L1MC1 LINE L1 5754 5978 -505 466 128 81 0 chr6 43838226 43838312 -145441242 - L1M4 LINE L1 -1300 4846 4754 * 3511 138 17 44 chr6 43838312 43838479 -145441075 + L1MC1 LINE L1 5980 6150 -463 1997 144 0 25 chr6 43838479 43838798 -145440756 + AluSx SINE Alu 1 311 -1 3511 138 17 44 chr6 43838798 43839268 -145440286 + L1MC1 LINE L1 6150 6600 -13 1187 59 0 0 chr6 43839275 43839410 -145440144 + AluY SINE Alu 1 135 -176 2416 78 3 0 chr6 43839410 43839705 -145439849 + AluSp SINE Alu 1 296 -17 970 131 0 0 chr6 43839735 43839865 -145439689 + AluSq/x SINE Alu 1 130 -182 2000 138 0 20 chr6 43839865 43840170 -145439384 + AluSx SINE Alu 1 299 -13 242 375 42 10 chr6 43840467 43840563 -145438991 - MIR SINE MIR -72 136 38 303 200 0 0 chr6 43841057 43841112 -145438442 - L1MC/D LINE L1 -871 5488 5434 197 164 55 73 chr6 43841281 43841336 -145438218 + L3b LINE CR1 1522 1575 -8 761 180 29 7 chr6 43841618 43841757 -145437797 - AluJo SINE Alu -169 143 2 2318 235 149 39 chr6 43842266 43843143 -145436411 - L2 LINE L2 -346 2968 1995 413 224 224 0 chr6 43843173 43843316 -145436238 + MLT1G LTR MaLR 410 584 -6 28 0 0 0 chr6 43843561 43843589 -145435965 + AT_rich Low_complexity Low_complexity 1 28 0 564 253 40 87 chr6 43843933 43844326 -145435228 - L1MC4a LINE L1 -396 5766 5691 938 130 0 30 chr6 43844326 43844457 -145435097 - FLAM_C SINE Alu -6 127 1 564 253 40 87 chr6 43844457 43844524 -145435030 - L1MC4a LINE L1 -471 5691 5622 4480 153 56 65 chr6 43844681 43845615 -145433939 - MER21A LTR ERV1 -6 925 1 2119 121 10 3 chr6 43845810 43846116 -145433438 - AluSg SINE Alu -2 308 1 1879 148 14 10 chr6 43846146 43846443 -145433111 + AluJb SINE Alu 1 298 -14 2095 109 3 3 chr6 43846750 43847066 -145432488 + AluSx SINE Alu 1 316 0 226 247 55 0 chr6 43847340 43847413 -145432141 + L1MC4 LINE L1 7419 7495 -547 623 195 8 0 chr6 43847417 43847535 -145432019 + MER3 DNA MER1_type 41 159 -50 292 213 0 0 chr6 43847554 43847601 -145431953 - MER66B LTR ERV1 -140 346 300 439 209 0 33 chr6 43847620 43847711 -145431843 - MER3 DNA MER1_type -121 88 1 460 251 38 93 chr6 43847717 43847829 -145431725 + L1MC5 LINE L1 7344 7461 -500 2450 68 3 0 chr6 43847829 43848123 -145431431 - AluY SINE Alu -16 295 1 460 251 38 93 chr6 43848123 43848377 -145431177 + L1MC5 LINE L1 7461 7690 -271 2732 133 54 9 chr6 43848405 43848848 -145430706 + L1PA16 LINE L1 5703 6165 -1 1800 175 20 0 chr6 43848885 43849188 -145430366 + AluJb SINE Alu 1 309 -3 233 109 22 0 chr6 43849191 43849237 -145430317 + GA-rich Low_complexity Low_complexity 2 48 0 344 257 74 35 chr6 43849240 43849442 -145430112 + L1MC4 LINE L1 7824 8033 -9 2051 125 7 7 chr6 43849667 43849964 -145429590 + AluSx SINE Alu 1 297 -15 800 188 20 7 chr6 43850014 43850163 -145429391 - FRAM SINE Alu -25 151 1 1610 155 84 18 chr6 43850819 43851103 -145428451 - AluJo SINE Alu -7 305 3 355 141 26 250 chr6 43852123 43852193 -145427361 + Charlie8 DNA MER1_type 61 145 -2272 2246 98 0 0 chr6 43852193 43852479 -145427075 - AluSx SINE Alu -10 302 17 4350 164 48 77 chr6 43852481 43852845 -145426709 - LTR13 LTR ERVK 0 954 581 2453 73 7 3 chr6 43852845 43853147 -145426407 + AluSc SINE Alu 1 303 -6 4350 164 48 77 chr6 43853147 43853765 -145425789 - LTR13 LTR ERVK -373 581 1 355 141 26 250 chr6 43853765 43853847 -145425707 + Charlie8 DNA MER1_type 146 181 -2236 527 176 0 20 chr6 43853854 43853956 -145425598 - L1MA9 LINE L1 -5 6307 6208 364 104 75 0 chr6 43854023 43854090 -145425464 - L1ME4a LINE L1 -1 6120 6049 852 172 35 0 chr6 43854125 43854270 -145425284 - FRAM SINE Alu -17 159 10 267 203 0 0 chr6 43854793 43854867 -145424687 + (TA)n Simple_repeat Simple_repeat 1 74 0 2387 82 0 0 chr6 43854883 43855175 -145424379 - AluSq SINE Alu -21 292 1 6551 53 2 0 chr6 43855250 43856039 -145423515 - L1PA5 LINE L1 -4 6150 5360 1936 171 0 13 chr6 43856110 43856425 -145423129 + AluJb SINE Alu 2 312 0 2197 126 0 0 chr6 43856456 43856749 -145422805 - AluSx SINE Alu -19 293 1 684 177 106 7 chr6 43857255 43857396 -145422158 - MER2 DNA MER2_type 0 345 191 285 150 133 33 chr6 43857414 43857474 -145422080 - Tigger2 DNA MER2_type -2 2716 2651 1297 148 8 66 chr6 43857475 43857718 -145421836 - AluJo SINE Alu -21 291 63 2251 114 43 48 chr6 43857733 43858126 -145421428 - Tigger2 DNA MER2_type -61 2657 2267 467 129 0 14 chr6 43858109 43858179 -145421375 - Tigger2 DNA MER2_type -2649 69 1 * 1016 179 0 12 chr6 43858179 43858346 -145421208 - MER2 DNA MER2_type -157 188 24 227 191 0 0 chr6 43859055 43859097 -145420457 - L1ME4a LINE L1 -106 6015 5974 306 203 110 76 chr6 43859134 43859252 -145420302 + MIR SINE MIR 47 168 -94 2112 104 24 7 chr6 43859951 43860249 -145419305 + AluSx SINE Alu 1 303 -9 1406 181 105 11 chr6 43860253 43860529 -145419025 + AluJo SINE Alu 1 302 0 305 100 20 0 chr6 43860545 43860595 -145418959 + (GA)n Simple_repeat Simple_repeat 1 51 0 30 0 0 0 chr6 43861007 43861037 -145418517 + AT_rich Low_complexity Low_complexity 1 30 0 879 144 8 0 chr6 43861349 43861481 -145418073 - FLAM_A SINE Alu 0 133 1 470 133 33 0 chr6 43861498 43861588 -145417966 - L1MA5 LINE L1 -2 6298 6206 1827 94 70 0 chr6 43861603 43861874 -145417680 + AluSx SINE Alu 23 310 0 1433 205 55 3 chr6 43861938 43862284 -145417270 - L1 LINE L1 -752 5394 5031 205 390 0 0 chr6 43864106 43864183 -145415371 + L2 LINE L2 3237 3313 0 531 223 89 19 chr6 43864454 43864611 -145414943 - LTR67 LTR ERVL -7 550 383 576 214 144 6 chr6 43865034 43865183 -145414371 - MER5A DNA MER1_type -13 176 4 775 188 7 36 chr6 43865208 43865346 -145414208 + MER58A DNA MER1_type 37 170 -54 727 270 203 22 chr6 43865520 43865875 -145413679 + MLT1L LTR MaLR 123 541 -74 233 281 124 41 chr6 43866036 43866157 -145413397 - MIR3 SINE MIR -72 136 6 225 0 0 0 chr6 43867884 43867909 -145411645 + (A)n Simple_repeat Simple_repeat 1 25 0 1746 150 45 17 chr6 43868862 43869149 -145410405 + AluJo SINE Alu 1 295 -17 4478 165 70 24 chr6 43869162 43870250 -145409304 + L1MB5 LINE L1 4962 6117 -57 2347 88 0 0 chr6 43870250 43870545 -145409009 - AluY SINE Alu -16 295 1 4478 165 70 24 chr6 43870545 43870606 -145408948 + L1MB5 LINE L1 6117 6174 0 2155 102 7 3 chr6 43870633 43870942 -145408612 - AluSq SINE Alu 0 310 1 2369 80 0 0 chr6 43870976 43871275 -145408279 + AluY SINE Alu 1 299 -12 2325 71 0 0 chr6 43871356 43871663 -145407891 - AluSp SINE Alu 0 307 1 1758 157 0 42 chr6 43872347 43872659 -145406895 - AluJo SINE Alu -9 303 5 1585 135 9 135 chr6 43873443 43873568 -145405986 + AluJb SINE Alu 3 142 -160 246 32 0 0 chr6 43873568 43873599 -145405955 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1585 135 9 135 chr6 43873599 43873611 -145405943 + AluJb SINE Alu 142 154 -148 1490 163 82 35 chr6 43873611 43873893 -145405661 + AluSq SINE Alu 1 295 -18 1585 135 9 135 chr6 43873893 43874088 -145405466 + AluJb SINE Alu 154 294 -8 2510 65 3 0 chr6 43874090 43874398 -145405156 + AluY SINE Alu 1 309 -2 998 145 0 0 chr6 43874454 43874599 -145404955 - AluJ SINE Alu -12 300 156 37 0 0 0 chr6 43874603 43874640 -145404914 + AT_rich Low_complexity Low_complexity 1 37 0 680 153 0 42 chr6 43874640 43874758 -145404796 - AluJ SINE Alu -162 150 38 226 341 140 21 chr6 43874821 43875149 -145404405 - L2 LINE L2 -685 2629 2263 2548 59 3 0 chr6 43875403 43875710 -145403844 + AluY SINE Alu 1 308 -3 29 47 0 0 chr6 43876261 43876304 -145403250 + AT_rich Low_complexity Low_complexity 1 43 0 323 152 0 0 chr6 43876574 43876620 -145402934 + AluJo SINE Alu 2 47 -261 917 103 0 89 chr6 43876662 43876808 -145402746 + FLAM_C SINE Alu 1 133 0 1140 179 153 0 chr6 43876819 43877048 -145402506 + AluJo SINE Alu 33 296 -16 2387 94 3 0 chr6 43877054 43877361 -145402193 + AluSq SINE Alu 1 308 -5 622 139 209 0 chr6 43877535 43877650 -145401904 + FLAM_C SINE Alu 5 143 0 1688 175 0 17 chr6 43877771 43878062 -145401492 - AluJb SINE Alu -24 288 3 322 349 92 7 chr6 43878375 43878527 -145401027 + MIR3 SINE MIR 38 202 -6 388 263 81 12 chr6 43878721 43878881 -145400673 - L1MC4a LINE L1 -1841 5967 5797 404 219 50 25 chr6 43878895 43879014 -145400540 - L1MC5 LINE L1 -33 7928 7807 1666 113 13 9 chr6 43879066 43879295 -145400259 - AluSx SINE Alu -82 230 1 1814 138 20 40 chr6 43879299 43879509 -145400045 - AluJb SINE Alu -14 298 94 2160 76 36 50 chr6 43879509 43879812 -145399742 - AluSq SINE Alu -14 299 1 1814 138 20 40 chr6 43879812 43879905 -145399649 - AluJb SINE Alu -218 94 1 476 160 27 0 chr6 43879905 43879980 -145399574 + FAM SINE Alu 72 148 -37 357 24 0 0 chr6 43879989 43880031 -145399523 + (CA)n Simple_repeat Simple_repeat 2 43 0 2169 110 0 0 chr6 43880035 43880317 -145399237 + AluSx SINE Alu 1 282 -30 2950 212 57 76 chr6 43880336 43881399 -145398155 - L1M4 LINE L1 -1704 4442 3400 1179 144 77 0 chr6 43881401 43881582 -145397972 + MER21B LTR ERV1 301 495 -368 473 181 63 0 chr6 43881742 43881869 -145397685 + L1MA4 LINE L1 6165 6299 -1 311 336 0 66 chr6 43881869 43881991 -145397563 - L1M4 LINE L1 -2744 3402 3289 1013 186 34 114 chr6 43881991 43882341 -145397213 + L1MC5 LINE L1 6750 7071 -890 735 238 14 59 chr6 43882336 43882374 -145397180 + L1MC5 LINE L1 7652 7690 -271 * 2400 57 7 0 chr6 43882374 43882671 -145396883 - AluY SINE Alu -12 299 1 735 238 14 59 chr6 43882671 43882918 -145396636 + L1MC5 LINE L1 7690 7924 -37 333 271 133 14 chr6 43882919 43882930 -145396624 - L1M4 LINE L1 -1442 4704 4696 1493 163 20 49 chr6 43882930 43883236 -145396318 + AluJb SINE Alu 1 297 -15 333 271 133 14 chr6 43883236 43883434 -145396120 - L1M4 LINE L1 -1450 4696 4470 376 339 50 38 chr6 43883446 43883685 -145395869 - L1M4 LINE L1 -1046 5100 4859 306 0 0 0 chr6 43883853 43883887 -145395667 + (CA)n Simple_repeat Simple_repeat 2 35 0 2156 94 7 3 chr6 43884686 43884994 -145394560 + AluY SINE Alu 1 309 -2 2698 172 73 21 chr6 43884994 43885553 -145394001 - L1MB5 LINE L1 -144 6030 5443 1453 147 3 46 chr6 43885580 43885886 -145393668 + AluJb SINE Alu 40 333 0 1969 97 40 30 chr6 43885887 43886185 -145393369 + AluSx SINE Alu 2 302 -10 5682 139 58 33 chr6 43886353 43886535 -145393019 + L1MC1 LINE L1 5184 5360 -973 1614 181 10 7 chr6 43886535 43886823 -145392731 + AluJo SINE Alu 1 289 -23 5682 139 58 33 chr6 43886823 43887761 -145391793 + L1MC1 LINE L1 5360 6328 -5 391 148 0 16 chr6 43887823 43887884 -145391670 - AluJo SINE Alu -21 281 222 1119 134 17 0 chr6 43887886 43888058 -145391496 - AluJo SINE Alu -125 187 13 24 0 0 0 chr6 43888074 43888098 -145391456 + AT_rich Low_complexity Low_complexity 1 24 0 1354 109 47 0 chr6 43888157 43888350 -145391204 - AluSq SINE Alu -111 202 1 265 235 17 84 chr6 43888350 43888469 -145391085 - MIR SINE MIR -48 214 104 1562 86 9 0 chr6 43889358 43889568 -145389986 - AluSg/x SINE Alu -1 311 100 189 0 0 0 chr6 43890106 43890127 -145389427 + (CAA)n Simple_repeat Simple_repeat 2 22 0 2049 85 43 0 chr6 43890346 43890649 -145388905 + AluY SINE Alu 1 311 0 2050 103 7 0 chr6 43890742 43891052 -145388502 + AluSx SINE Alu 1 312 0 1057 133 23 0 chr6 43891056 43891229 -145388325 + L1MB3 LINE L1 5795 5971 -212 651 221 0 0 chr6 43891229 43891351 -145388203 + FLAM_A SINE Alu 4 125 -8 2012 105 7 0 chr6 43891355 43891641 -145387913 + AluSx SINE Alu 1 288 -24 34 0 0 0 chr6 43891641 43891675 -145387879 + AT_rich Low_complexity Low_complexity 1 34 0 1609 177 0 30 chr6 43891692 43891997 -145387557 + AluJo SINE Alu 14 309 -3 518 174 9 0 chr6 43892004 43892113 -145387441 + GA-rich Low_complexity Low_complexity 1 110 0 908 146 19 13 chr6 43892158 43892316 -145387238 - FRAM SINE Alu -18 158 1 1020 149 0 11 chr6 43892316 43892497 -145387057 + L1MB3 LINE L1 6005 6183 0 1837 129 39 0 chr6 43892499 43892778 -145386776 - AluSx SINE Alu -22 290 1 2136 111 0 3 chr6 43892794 43893101 -145386453 + AluSx SINE Alu 1 306 -6 2234 89 0 0 chr6 43893515 43893807 -145385747 + AluSg SINE Alu 1 292 -18 2275 88 0 0 chr6 43894227 43894532 -145385022 - AluY SINE Alu -6 305 1 354 338 65 0 chr6 43895036 43895190 -145384364 - L2 LINE L2 -38 3275 3112 350 305 120 15 chr6 43895816 43896016 -145383538 - MLT1J LTR MaLR -38 473 253 2244 85 0 23 chr6 43896416 43896723 -145382831 + AluSx SINE Alu 1 300 -12 2080 105 10 0 chr6 43896783 43897077 -145382477 + AluSc SINE Alu 1 297 -12 6136 52 3 0 chr6 43897345 43898088 -145381466 - L1PA5 LINE L1 -5 6149 5405 1960 135 3 0 chr6 43898118 43898406 -145381148 + AluSp SINE Alu 2 290 -23 2299 81 0 0 chr6 43898593 43898888 -145380666 + AluY SINE Alu 2 296 -15 2301 90 0 10 chr6 43899466 43899777 -145379777 + AluSx SINE Alu 1 308 -4 211 305 42 11 chr6 43899882 43899977 -145379577 + MIR3 SINE MIR 110 207 -1 344 233 81 0 chr6 43900381 43900467 -145379087 - MIR SINE MIR -50 212 120 2137 97 13 10 chr6 43900659 43900969 -145378585 + AluSx SINE Alu 1 311 -1 494 113 0 0 chr6 43901839 43901910 -145377644 - AluJ/FRAM SINE Alu -10 302 232 1494 128 45 0 chr6 43901922 43902165 -145377389 - AluJo SINE Alu -52 260 7 186 250 19 19 chr6 43902900 43902952 -145376602 + L2 LINE L2 3252 3303 -10 2039 125 3 0 chr6 43903146 43903443 -145376111 + AluSx SINE Alu 1 298 -14 1366 205 30 17 chr6 43903619 43903916 -145375638 + AluJo SINE Alu 1 301 -11 366 250 66 52 chr6 43904047 43904183 -145375371 - LTR67 LTR ERVL 0 557 420 2093 111 0 0 chr6 43904876 43905165 -145374389 + AluSx SINE Alu 5 293 -19 791 150 0 0 chr6 43905180 43905300 -145374254 - FLAM_C SINE Alu -18 125 6 1807 138 39 0 chr6 43905327 43905610 -145373944 + AluSx SINE Alu 1 294 -18 1642 94 126 12 chr6 43905665 43905946 -145373608 - AluSg SINE Alu 0 310 1 938 194 0 0 chr6 43905949 43906114 -145373440 - FRAM SINE Alu -14 162 1 1597 192 3 3 chr6 43906619 43906911 -145372643 - AluJb SINE Alu -20 292 1 2264 94 0 0 chr6 43907387 43907694 -145371860 + AluSg SINE Alu 1 307 -3 1678 163 3 23 chr6 43907709 43908015 -145371539 + AluJb SINE Alu 1 300 -12 1596 129 13 93 chr6 43908129 43908440 -145371114 + AluJo SINE Alu 12 297 -15 2235 100 0 3 chr6 43908440 43908751 -145370803 + AluSg SINE Alu 1 310 0 632 203 0 30 chr6 43908985 43909118 -145370436 - AluJb SINE Alu -19 293 165 1712 176 10 0 chr6 43910344 43910640 -145368914 + AluJb SINE Alu 1 299 -13 24 77 0 0 chr6 43910680 43910732 -145368822 + AT_rich Low_complexity Low_complexity 1 52 0 1089 190 23 5 chr6 43910769 43910985 -145368569 + AluJo SINE Alu 1 220 -92 1856 142 3 3 chr6 43911277 43911572 -145367982 - AluSx SINE Alu -11 301 7 273 280 203 25 chr6 43911989 43912107 -145367447 + L2 LINE L2 3124 3262 -10 2798 118 102 82 chr6 43912235 43912427 -145367127 + Tigger3b DNA MER2_type 2 189 -2839 1697 163 20 3 chr6 43912427 43912722 -145366832 + AluJb SINE Alu 1 300 -12 2798 118 102 82 chr6 43912722 43913147 -145366407 + Tigger3b DNA MER2_type 189 631 -600 822 168 0 28 chr6 43913148 43913291 -145366263 + FLAM_A SINE Alu 1 139 -3 3532 110 85 2 chr6 43913307 43913882 -145365672 + Tigger3b DNA MER2_type 609 1231 0 334 244 0 35 chr6 43914178 43914264 -145365290 - L3 LINE CR1 -5 1572 1490 974 173 154 30 chr6 43914580 43914692 -145364862 + AluSg1 SINE Alu 1 98 -211 1659 127 68 93 chr6 43914692 43915077 -145364477 + THE1C LTR MaLR 1 375 0 974 173 154 30 chr6 43915077 43915107 -145364447 + AluSg1 SINE Alu 98 123 -186 1241 146 54 130 chr6 43915107 43915253 -145364301 + AluSx SINE Alu 3 159 -143 207 0 0 0 chr6 43915253 43915276 -145364278 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2201 95 0 3 chr6 43915276 43915582 -145363972 + AluY SINE Alu 1 305 -6 1241 146 54 130 chr6 43915582 43915786 -145363768 + AluSx SINE Alu 157 302 0 974 173 154 30 chr6 43915786 43915908 -145363646 + AluSg1 SINE Alu 123 299 -10 679 143 109 0 chr6 43916133 43916252 -145363302 - FLAM_C SINE Alu -1 132 1 252 221 0 0 chr6 43918143 43918220 -145361334 + (CCG)n Simple_repeat Simple_repeat 1 77 0 509 138 87 65 chr6 43919164 43919302 -145360252 - FLAM_C SINE Alu -2 141 1 1656 148 0 70 chr6 43919652 43919983 -145359571 - AluJb SINE Alu -4 308 1 2279 94 0 0 chr6 43920149 43920456 -145359098 + AluSx SINE Alu 1 307 -5 1246 210 113 25 chr6 43920465 43920716 -145358838 + L1M4 LINE L1 2705 2932 -3214 840 148 0 15 chr6 43920716 43920851 -145358703 + AluJ SINE Alu 1 133 -169 1246 210 113 25 chr6 43920851 43920950 -145358604 + L1M4 LINE L1 2932 3021 -3125 1766 171 13 0 chr6 43920950 43921249 -145358305 + AluJb SINE Alu 1 303 -9 1246 210 113 25 chr6 43921249 43921373 -145358181 + L1M4 LINE L1 3021 3222 -2924 946 172 18 0 chr6 43921376 43921566 -145357988 + AluJ SINE Alu 120 312 0 774 128 34 0 chr6 43921569 43921686 -145357868 + L1MC3 LINE L1 7647 7767 -18 * 1560 286 81 14 chr6 43921660 43921910 -145357644 + L1M4 LINE L1 3458 3690 -2456 225 0 0 0 chr6 43921910 43921935 -145357619 + (CA)n Simple_repeat Simple_repeat 2 26 0 1560 286 81 14 chr6 43921935 43922353 -145357201 + L1M4 LINE L1 3690 4171 -1975 408 315 9 0 chr6 43922354 43922465 -145357089 - MLT1K LTR MaLR -408 180 69 21 36 0 0 chr6 43922539 43922567 -145356987 + GC_rich Low_complexity Low_complexity 1 28 0 2634 79 25 82 chr6 43922618 43923384 -145356170 + SVA Other Other 393 868 -520 1670 104 13 74 chr6 43923401 43923863 -145355691 + SVA Other Other 433 866 -520 27 49 0 0 chr6 43923868 43923909 -145355645 + GC_rich Low_complexity Low_complexity 1 41 0 6225 69 14 48 chr6 43923931 43924918 -145354636 + SVA Other Other 433 1386 0 352 226 27 103 chr6 43924919 43924983 -145354571 + L1M4 LINE L1 4151 4199 -1947 1822 147 7 0 chr6 43924983 43925297 -145354257 - AluSx SINE Alu 0 312 1 352 226 27 103 chr6 43925297 43925378 -145354176 + L1M4 LINE L1 4199 4285 -1861 2198 88 3 0 chr6 43925378 43925663 -145353891 + AluSg SINE Alu 1 286 -24 1023 140 10 17 chr6 43925681 43926009 -145353545 + MER21A LTR ERV1 83 432 -431 696 131 0 0 chr6 43926009 43926108 -145353446 - LTR12 LTR ERV1 -1 713 615 267 208 31 83 chr6 43926111 43926207 -145353347 - LTR30 LTR ERV1 -80 642 552 23 0 0 0 chr6 43926213 43926236 -145353318 + GC_rich Low_complexity Low_complexity 1 23 0 1449 105 39 53 chr6 43926271 43926544 -145353010 - LTR12 LTR ERV1 -425 2013 57 246 269 0 0 chr6 43926544 43926596 -145352958 - LTR30 LTR ERV1 -670 52 1 800 216 82 35 chr6 43926639 43926870 -145352684 - MER4D LTR ERV1 -11 892 651 2599 144 9 118 chr6 43926870 43927411 -145352143 - LTR12 LTR ERV1 -232 482 1 2960 150 47 72 chr6 43927412 43927535 -145352019 - MER4D LTR ERV1 -253 650 525 2049 121 0 0 chr6 43927535 43927833 -145351721 - AluSx SINE Alu -14 298 1 2960 150 47 72 chr6 43927833 43928376 -145351178 - MER4D LTR ERV1 -378 525 1 913 126 28 28 chr6 43928377 43928520 -145351034 + MER21A LTR ERV1 559 701 -230 1538 188 72 60 chr6 43928520 43928966 -145350588 + pTR5 LTR ERV1 743 1193 -1245 2519 161 108 91 chr6 43928969 43929554 -145350000 + LTR12 LTR ERV1 118 712 -2 742 165 52 113 chr6 43929554 43929802 -145349752 + MER21A LTR ERV1 696 928 -3 2239 210 52 34 chr6 43929805 43930081 -145349473 + L1ME1 LINE L1 5556 5825 -341 2190 110 0 0 chr6 43930081 43930390 -145349164 + AluSx SINE Alu 1 309 -3 2239 210 52 34 chr6 43930390 43930708 -145348846 + L1ME1 LINE L1 5825 6161 -5 247 271 101 47 chr6 43930826 43930955 -145348599 + L1ME3A LINE L1 5975 6110 -60 1883 137 10 7 chr6 43930958 43931257 -145348297 + AluSx SINE Alu 5 304 -8 2139 104 3 10 chr6 43931280 43931565 -145347989 + AluSp SINE Alu 1 305 -8 22 0 0 0 chr6 43931565 43931587 -145347967 + AT_rich Low_complexity Low_complexity 1 22 0 1990 120 3 7 chr6 43931669 43931952 -145347602 + AluSx SINE Alu 1 282 -30 308 24 24 0 chr6 43931956 43931997 -145347557 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1926 93 19 30 chr6 43932000 43932269 -145347285 + AluSq SINE Alu 1 266 -47 216 0 0 0 chr6 43932690 43932714 -145346840 + (TG)n Simple_repeat Simple_repeat 2 25 0 1814 158 9 53 chr6 43933289 43933611 -145345943 + AluJb SINE Alu 1 308 -4 1989 142 0 22 chr6 43933611 43933922 -145345632 + AluSq SINE Alu 1 304 -9 310 288 181 10 chr6 43933922 43934184 -145345370 + L2 LINE L2 2691 3036 -236 3816 105 0 4 chr6 43934435 43934948 -145344606 + MER9 LTR ERVK 1 511 0 218 324 81 9 chr6 43934999 43935110 -145344444 - L2 LINE L2 -15 3257 3139 256 313 145 33 chr6 43935145 43935359 -145344195 + L2 LINE L2 2123 2360 -954 1504 147 108 39 chr6 43935516 43935795 -145343759 + AluSx SINE Alu 3 300 -12 348 298 57 0 chr6 43935795 43935919 -145343635 - L2 LINE L2 -530 2784 2654 2172 138 0 0 chr6 43936022 43936320 -145343234 + AluSx SINE Alu 1 298 -14 1933 130 9 16 chr6 43936322 43936670 -145342884 + MER4A LTR ERV1 261 664 0 302 264 104 7 chr6 43936671 43936815 -145342739 - L1MEd LINE L1 -4906 1213 1056 1027 159 0 6 chr6 43936815 43936985 -145342569 + AluJb SINE Alu 134 302 -10 766 151 67 67 chr6 43937132 43937152 -145342402 - AluJb SINE Alu 0 312 293 713 128 0 101 chr6 43937152 43937300 -145342254 - FLAM_A SINE Alu 0 133 1 2416 81 0 0 chr6 43937309 43937605 -145341949 - AluY SINE Alu -15 296 1 2494 53 0 10 chr6 43937605 43937906 -145341648 - AluY SINE Alu -13 298 1 766 151 67 67 chr6 43937906 43938053 -145341501 - AluJb SINE Alu -25 287 134 2372 107 0 3 chr6 43938053 43938361 -145341193 - AluSx SINE Alu -5 307 1 2359 96 0 19 chr6 43938364 43938677 -145340877 - AluSq SINE Alu -6 307 1 2187 103 3 13 chr6 43938681 43938983 -145340571 - AluSx SINE Alu -13 299 1 1440 158 43 50 chr6 43938985 43939263 -145340291 - AluJb SINE Alu -7 305 30 2310 68 17 10 chr6 43939267 43939561 -145339993 - AluSg SINE Alu -14 296 1 22 0 0 0 chr6 43939565 43939587 -145339967 + AT_rich Low_complexity Low_complexity 1 22 0 227 209 97 82 chr6 43939614 43939748 -145339806 + L1ME4a LINE L1 5975 6110 -11 337 113 0 0 chr6 43941918 43941980 -145337574 - Alu SINE Alu 0 301 240 1976 124 21 0 chr6 43942196 43942478 -145337076 - AluSx SINE Alu -24 288 1 235 288 82 0 chr6 43942509 43942582 -145336972 - MER5B DNA MER1_type -19 159 81 345 183 32 21 chr6 43942651 43942903 -145336651 + AluJo SINE Alu 3 295 -7 1853 140 8 0 chr6 43943016 43943281 -145336273 - AluSx SINE Alu -45 267 1 27 0 0 0 chr6 43943400 43943427 -145336127 + AT_rich Low_complexity Low_complexity 1 27 0 2110 135 0 7 chr6 43943434 43943737 -145335817 + AluSg SINE Alu 1 301 -9 2708 134 41 8 chr6 43943737 43944223 -145335331 - L1MB3 LINE L1 -41 6378 5877 1204 97 6 11 chr6 43944224 43944400 -145335154 + THE1A LTR MaLR 2 176 -179 4581 87 6 15 chr6 43944400 43944976 -145334578 + THE1A-int LTR MaLR 932 1503 -77 2382 80 0 25 chr6 43944976 43945290 -145334264 + AluY SINE Alu 1 306 -5 4581 87 6 15 chr6 43945290 43945368 -145334186 + THE1A-int LTR MaLR 1503 1580 0 2789 74 6 0 chr6 43945368 43945721 -145333833 + THE1A LTR MaLR 1 355 0 1389 122 0 138 chr6 43945721 43945763 -145333791 - L1MB3 LINE L1 -538 5881 5835 896 168 0 0 chr6 43945763 43945894 -145333660 - FLAM_A SINE Alu -2 131 1 1389 122 0 138 chr6 43945894 43946106 -145333448 - L1MB3 LINE L1 -584 5835 5689 847 159 0 36 chr6 43946106 43946244 -145333310 - FLAM_C SINE Alu 0 133 1 1389 122 0 138 chr6 43946244 43946350 -145333204 - L1MB3 LINE L1 -730 5689 5570 256 118 191 0 chr6 43946326 43946394 -145333160 - L1MB3 LINE L1 -3890 2494 2414 * 2235 128 0 0 chr6 43946423 43946719 -145332835 + AluSx SINE Alu 1 296 -16 297 0 0 0 chr6 43946719 43946732 -145332822 + (CA)n Simple_repeat Simple_repeat 1 46 0 297 0 0 0 chr6 43946732 43946765 -145332789 + (CA)n Simple_repeat Simple_repeat 2 34 0 419 49 110 12 chr6 43946856 43947020 -145332534 + (TA)n Simple_repeat Simple_repeat 1 180 0 1560 61 0 0 chr6 43947020 43947221 -145332333 + AluY SINE Alu 102 302 0 378 200 12 0 chr6 43947224 43947309 -145332245 - L1MEc LINE L1 -4049 2558 2473 1517 202 3 23 chr6 43947320 43947622 -145331932 - AluJo SINE Alu -16 296 1 2320 104 0 0 chr6 43947627 43947936 -145331618 - AluSg SINE Alu -1 309 1 2261 89 7 7 chr6 43947940 43948242 -145331312 - AluY SINE Alu -9 302 1 736 216 69 63 chr6 43948243 43948299 -145331255 - L1MEc LINE L1 -4128 2479 2425 2342 88 0 0 chr6 43948299 43948594 -145330960 - AluY SINE Alu -16 295 1 216 0 0 0 chr6 43948598 43948622 -145330932 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2213 99 7 0 chr6 43948626 43948918 -145330636 - AluSx SINE Alu -18 294 1 736 216 69 63 chr6 43948918 43949198 -145330356 - L1MEc LINE L1 -4186 2421 2131 2292 108 3 0 chr6 43949226 43949531 -145330023 - AluSq SINE Alu -7 306 1 398 109 0 0 chr6 43949531 43949586 -145329968 - L1M4 LINE L1 -3395 2751 2697 2080 123 31 3 chr6 43949640 43949932 -145329622 - AluSx SINE Alu -12 300 1 782 172 0 15 chr6 43949974 43950101 -145329453 + FLAM_A SINE Alu 1 127 -175 2420 94 10 0 chr6 43950101 43950410 -145329144 + AluSq SINE Alu 1 312 -1 572 263 61 41 chr6 43950474 43950587 -145328967 - L1M1 LINE L1 -1926 4500 4391 6319 67 19 4 chr6 43950587 43950943 -145328611 - L1PB1 LINE L1 -1 6150 5801 486 0 0 0 chr6 43950943 43950997 -145328557 + (TA)n Simple_repeat Simple_repeat 1 54 0 6319 67 19 4 chr6 43950997 43951127 -145328427 - L1PB1 LINE L1 -350 5801 5674 2136 105 0 53 chr6 43951127 43951450 -145328104 - AluSx SINE Alu -6 306 1 6319 67 19 4 chr6 43951450 43951653 -145327901 - L1PB1 LINE L1 -477 5674 5475 2353 108 0 13 chr6 43951653 43951967 -145327587 - AluY SINE Alu -1 310 1 6319 67 19 4 chr6 43951967 43952597 -145326957 - L1PB1 LINE L1 -676 5475 4854 572 263 61 41 chr6 43952597 43952815 -145326739 - L1M1 LINE L1 -2035 4391 1758 1079 106 0 0 chr6 43952854 43952995 -145326559 - AluJb SINE Alu -171 141 1 3920 115 19 3 chr6 43953096 43953680 -145325874 - HUERS-P3 LTR ERV1 -2920 5999 5407 958 94 0 58 chr6 43953781 43953919 -145325635 + AluSq/x SINE Alu 9 138 -175 2085 139 0 0 chr6 43953919 43954222 -145325332 + AluSx SINE Alu 3 305 -7 1729 135 0 39 chr6 43955038 43955298 -145324256 + AluSq SINE Alu 1 250 -63 2393 75 7 13 chr6 43955533 43955841 -145323713 - AluY SINE Alu -1 310 5 2070 115 24 24 chr6 43956052 43956348 -145323206 + AluSx SINE Alu 1 296 -16 331 211 58 29 chr6 43956407 43956511 -145323043 - Charlie5 DNA MER1_type -49 2563 2457 872 200 7 7 chr6 43956515 43956665 -145322889 + FRAM SINE Alu 1 142 -34 2228 112 3 6 chr6 43956692 43957005 -145322549 + AluSx SINE Alu 1 312 0 348 148 164 23 chr6 43957013 43957107 -145322447 - Charlie5 DNA MER1_type -116 2469 2351 1646 163 83 0 chr6 43957107 43957244 -145322310 + AluJb SINE Alu 1 125 -187 2390 87 0 22 chr6 43957244 43957556 -145321998 + AluSp SINE Alu 1 305 -8 1646 163 83 0 chr6 43957556 43957694 -145321860 + AluJb SINE Alu 125 299 -13 348 148 164 23 chr6 43957694 43957727 -145321827 - Charlie5 DNA MER1_type -234 2351 2324 400 288 141 12 chr6 43958483 43958646 -145320908 + MIR SINE MIR 28 211 -51 201 247 169 0 chr6 43958806 43958883 -145320671 - MIR SINE MIR -61 147 58 561 129 35 0 chr6 43959627 43959712 -145319842 + FLAM_A SINE Alu 34 121 -21 2236 118 16 0 chr6 43959741 43960047 -145319507 - AluSx SINE Alu -1 311 1 1655 163 0 45 chr6 43960587 43960876 -145318678 + AluJb SINE Alu 1 276 -36 753 152 64 0 chr6 43960900 43961025 -145318529 + FLAM_A SINE Alu 1 133 0 1563 124 153 18 chr6 43962521 43962795 -145316759 + AluYb8 SINE Alu 1 311 -7 2183 104 0 10 chr6 43962805 43963130 -145316424 + AluSg SINE Alu 1 322 0 2314 198 37 0 chr6 43963283 43963769 -145315785 - L1ME1 LINE L1 -218 5948 5445 1455 143 58 0 chr6 43963839 43964097 -145315457 + L1MA6 LINE L1 6006 6278 -22 2355 93 3 3 chr6 43964942 43965243 -145314311 + AluSp SINE Alu 1 301 -12 483 200 154 0 chr6 43965301 43965411 -145314143 - FLAM_A SINE Alu -8 134 8 1354 171 123 45 chr6 43965477 43965513 -145314041 - L1ME1 LINE L1 -5 6161 6129 1874 162 7 17 chr6 43965513 43965809 -145313745 - AluJb SINE Alu -19 293 1 1354 171 123 45 chr6 43965809 43966133 -145313421 - L1ME1 LINE L1 -37 6129 5832 1995 109 52 0 chr6 43966133 43966429 -145313125 - AluSx SINE Alu 0 310 1 1354 171 123 45 chr6 43966429 43966442 -145313112 - L1ME1 LINE L1 -334 5832 5821 2135 117 20 0 chr6 43966442 43966740 -145312814 - AluSx SINE Alu -8 304 1 1354 171 123 45 chr6 43966740 43966756 -145312798 - L1ME1 LINE L1 -345 5821 5754 872 226 16 5 chr6 43966847 43967037 -145312517 + MER90 LTR ERV1 1 192 -422 519 125 0 0 chr6 43967045 43967117 -145312437 + AluS SINE Alu 2 73 -240 828 230 55 0 chr6 43967117 43967317 -145312237 + MER90 LTR ERV1 402 612 -2 2253 119 7 0 chr6 43967353 43967655 -145311899 - AluSx SINE Alu -8 304 1 2352 118 0 6 chr6 43967762 43968076 -145311478 + AluSx SINE Alu 1 312 0 254 206 48 0 chr6 43968103 43968166 -145311388 - L1ME1 LINE L1 -450 5714 5649 400 103 0 0 chr6 43968166 43968224 -145311330 - MLT1D LTR MaLR 0 505 448 2031 137 10 7 chr6 43968225 43968518 -145311036 - AluJb SINE Alu -18 294 1 1052 136 0 0 chr6 43968569 43968716 -145310838 - FRAM SINE Alu -23 153 7 2543 67 0 0 chr6 43968725 43969025 -145310529 - AluSq SINE Alu -13 300 1 1831 201 24 86 chr6 43969027 43969135 -145310419 - L1ME1 LINE L1 -846 5300 5187 2190 141 0 0 chr6 43969135 43969440 -145310114 - AluSx SINE Alu -7 305 1 1831 201 24 86 chr6 43969440 43969510 -145310044 - L1ME1 LINE L1 -959 5187 5114 2089 129 24 0 chr6 43969510 43969804 -145309750 - AluJb SINE Alu -11 301 1 1831 201 24 86 chr6 43969804 43969819 -145309735 - L1ME1 LINE L1 -1032 5114 5100 2267 88 10 14 chr6 43969819 43970115 -145309439 - AluSq SINE Alu -18 295 1 1831 201 24 86 chr6 43970115 43970224 -145309330 - L1ME1 LINE L1 -1046 5100 4986 3626 147 29 8 chr6 43970224 43970583 -145308971 - LTR26 LTR ERV1 0 603 226 2227 109 3 22 chr6 43970583 43970895 -145308659 - AluSx SINE Alu -6 306 1 3626 147 29 8 chr6 43970895 43971126 -145308428 - LTR26 LTR ERV1 -377 226 1 1831 201 24 86 chr6 43971126 43971421 -145308133 - L1ME1 LINE L1 -1160 4986 4742 2047 143 0 10 chr6 43971421 43971722 -145307832 - AluJo SINE Alu -14 298 1 1831 201 24 86 chr6 43971722 43971786 -145307768 - L1ME1 LINE L1 -1404 4742 4676 459 35 0 0 chr6 43971792 43971849 -145307705 + (TG)n Simple_repeat Simple_repeat 2 58 0 1759 122 42 35 chr6 43971849 43972128 -145307426 - AluJo SINE Alu -24 288 5 39 0 0 0 chr6 43972137 43972176 -145307378 + AT_rich Low_complexity Low_complexity 1 39 0 933 191 77 26 chr6 43972179 43972319 -145307235 - AluJo SINE Alu -24 288 157 2186 107 0 30 chr6 43972319 43972619 -145306935 - AluSx SINE Alu -21 291 1 1237 180 136 37 chr6 43972623 43972756 -145306798 - AluJo SINE Alu -13 299 181 1989 141 14 0 chr6 43972756 43973053 -145306501 - AluJb SINE Alu -11 301 1 1237 180 136 37 chr6 43973053 43973191 -145306363 - AluJo SINE Alu -131 181 1 933 191 77 26 chr6 43973191 43973239 -145306315 - AluJo SINE Alu -157 155 85 822 225 0 24 chr6 43973266 43973435 -145306119 - AluJb SINE Alu -51 261 97 1113 226 47 12 chr6 43973446 43973785 -145305769 - L1M4 LINE L1 -1045 5101 4755 1094 118 13 0 chr6 43973786 43973938 -145305616 - AluSg/x SINE Alu -17 293 140 939 268 12 29 chr6 43973940 43974099 -145305455 - L1M4 LINE L1 -1384 4762 4602 2165 119 10 0 chr6 43974099 43974393 -145305161 - AluSq SINE Alu -16 297 1 939 268 12 29 chr6 43974393 43974576 -145304978 - L1M4 LINE L1 -1544 4602 4426 2140 73 3 28 chr6 43974576 43974863 -145304691 - AluY SINE Alu -2 309 30 1931 108 12 4 chr6 43974873 43975131 -145304423 - AluSq SINE Alu -20 293 34 2017 90 112 0 chr6 43975132 43975410 -145304144 - AluSq SINE Alu -4 309 1 204 216 0 0 chr6 43975535 43975586 -145303968 + A-rich Low_complexity Low_complexity 1 51 0 1027 159 0 6 chr6 43975720 43975890 -145303664 - AluJb SINE Alu -10 302 134 302 264 104 7 chr6 43975890 43976034 -145303520 + L1MEd LINE L1 1056 1213 -4906 1933 130 9 16 chr6 43976035 43976383 -145303171 - MER4A LTR ERV1 0 664 261 2172 138 0 0 chr6 43976385 43976683 -145302871 - AluSx SINE Alu -14 298 1 348 298 57 0 chr6 43976786 43976910 -145302644 + L2 LINE L2 2654 2784 -530 1504 147 108 39 chr6 43976910 43977189 -145302365 - AluSx SINE Alu -12 300 3 256 313 145 33 chr6 43977346 43977560 -145301994 - L2 LINE L2 -954 2360 2123 218 324 81 9 chr6 43977595 43977706 -145301848 + L2 LINE L2 3139 3257 -15 3816 105 0 4 chr6 43977757 43978270 -145301284 - MER9 LTR ERVK 0 511 1 310 288 181 10 chr6 43978521 43978783 -145300771 - L2 LINE L2 -236 3036 2691 1989 142 0 22 chr6 43978783 43979094 -145300460 - AluSq SINE Alu -9 304 1 1814 158 9 53 chr6 43979094 43979416 -145300138 - AluJb SINE Alu -4 308 1 216 0 0 0 chr6 43979991 43980015 -145299539 + (CA)n Simple_repeat Simple_repeat 2 25 0 1926 93 19 30 chr6 43980436 43980705 -145298849 - AluSq SINE Alu -47 266 1 308 24 24 0 chr6 43980708 43980749 -145298805 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1990 120 3 7 chr6 43980753 43981036 -145298518 - AluSx SINE Alu -30 282 1 2291 104 3 10 chr6 43981118 43981425 -145298129 - AluSp SINE Alu -8 305 1 2032 137 10 7 chr6 43981448 43981747 -145297807 - AluSx SINE Alu -8 304 5 350 271 101 47 chr6 43981750 43981879 -145297675 - L1ME3A LINE L1 -60 6110 5975 2096 210 52 34 chr6 43981997 43982315 -145297239 - L1ME1 LINE L1 -5 6161 5825 2353 110 0 0 chr6 43982315 43982624 -145296930 - AluSx SINE Alu -3 309 1 2096 210 52 34 chr6 43982624 43982900 -145296654 - L1ME1 LINE L1 -341 5825 5556 693 169 52 113 chr6 43982903 43983151 -145296403 - MER21A LTR ERV1 -3 928 696 2393 161 108 91 chr6 43983151 43983736 -145295818 - LTR12 LTR ERV1 -2 712 118 1509 188 72 60 chr6 43983739 43984185 -145295369 - pTR5 LTR ERV1 -1245 1193 743 867 126 28 28 chr6 43984185 43984328 -145295226 - MER21A LTR ERV1 -230 701 559 2800 157 47 72 chr6 43984329 43984872 -145294682 + MER4D LTR ERV1 1 525 -378 2203 121 0 0 chr6 43984872 43985170 -145294384 + AluSx SINE Alu 1 298 -14 2800 157 47 72 chr6 43985170 43985293 -145294261 + MER4D LTR ERV1 525 650 -253 2471 144 9 118 chr6 43985294 43985835 -145293719 + LTR12 LTR ERV1 1 482 -232 767 216 82 35 chr6 43985835 43986066 -145293488 + MER4D LTR ERV1 651 892 -11 242 269 0 0 chr6 43986109 43986161 -145293393 + LTR30 LTR ERV1 1 52 -670 1370 105 39 53 chr6 43986161 43986434 -145293120 + LTR12 LTR ERV1 57 2013 -425 23 0 0 0 chr6 43986469 43986492 -145293062 + GC_rich Low_complexity Low_complexity 1 23 0 260 208 31 83 chr6 43986498 43986594 -145292960 + LTR30 LTR ERV1 552 642 -80 668 131 0 0 chr6 43986597 43986696 -145292858 + LTR12 LTR ERV1 615 713 -1 1094 139 5 123 chr6 43986696 43987042 -145292512 - MER21A LTR ERV1 -431 432 126 2377 81 3 0 chr6 43987042 43987327 -145292227 - AluSg SINE Alu -24 286 1 1094 139 5 123 chr6 43987327 43987440 -145292114 - MER21A LTR ERV1 -737 126 1 286 139 0 0 chr6 43987440 43987483 -145292071 - L1ME LINE L1 -607 5559 5517 2122 101 7 0 chr6 43987483 43987799 -145291755 + AluSx SINE Alu 5 322 0 2252 75 0 34 chr6 43987799 43988142 -145291412 + AluY SINE Alu 1 333 0 474 132 0 0 chr6 43988165 43988241 -145291313 + (TC)n Simple_repeat Simple_repeat 1 76 0 1911 164 3 0 chr6 43988242 43988534 -145291020 - AluJb SINE Alu -19 293 1 714 185 51 10 chr6 43988542 43988737 -145290817 - L1ME LINE L1 -811 5335 5133 2262 100 0 0 chr6 43988756 43989035 -145290519 - AluSg SINE Alu -31 279 1 850 159 0 7 chr6 43989045 43989183 -145290371 - AluJo/FRAM SINE Alu -1 311 175 389 81 16 0 chr6 43989183 43989245 -145290309 + AluSp/q SINE Alu 241 303 0 866 192 14 112 chr6 43989246 43989427 -145290127 - L1ME LINE L1 -1211 4935 4791 2257 117 10 0 chr6 43989427 43989735 -145289819 - AluSp SINE Alu -2 311 1 866 192 14 112 chr6 43989735 43989840 -145289714 - L1ME LINE L1 -1355 4791 4677 734 223 91 65 chr6 43989879 43990046 -145289508 + L1MD3 LINE L1 7657 7818 -177 1702 179 7 23 chr6 43990046 43990347 -145289207 + AluJb SINE Alu 1 296 -16 1857 186 0 0 chr6 43990353 43990649 -145288905 + AluJb SINE Alu 1 296 -16 2160 125 0 0 chr6 43990653 43990954 -145288600 + AluSg SINE Alu 1 301 0 734 223 91 65 chr6 43990954 43991082 -145288472 + L1MD3 LINE L1 7824 7973 -22 1869 123 56 0 chr6 43991082 43991377 -145288177 + AluSx SINE Alu 1 310 0 652 132 0 26 chr6 43991417 43991531 -145288023 + AluJo/FLAM SINE Alu 18 128 -184 2715 3 0 0 chr6 43991533 43991853 -145287701 + AluY SINE Alu 1 320 0 1757 235 21 45 chr6 43991853 43992358 -145287196 - MLT1E LTR MaLR -60 533 42 1769 231 154 38 chr6 43992437 43992713 -145286841 - L1MC5 LINE L1 -523 7438 7195 2066 112 0 85 chr6 43992713 43993079 -145286475 - AluSx SINE Alu 0 312 1 1769 231 154 38 chr6 43993079 43993438 -145286116 - L1MC5 LINE L1 -766 7195 6704 700 211 72 0 chr6 43993438 43993590 -145285964 - FRAM SINE Alu -3 163 1 1769 231 154 38 chr6 43993590 43993686 -145285868 - L1MC5 LINE L1 -1257 6704 6621 1974 118 38 14 chr6 43993686 43993974 -145285580 + AluSx SINE Alu 1 295 -17 446 278 105 33 chr6 43994589 43994801 -145284753 - MLT1H LTR MaLR -273 276 51 2849 13 0 0 chr6 43995301 43995602 -145283952 - AluYa5 SINE Alu -10 301 1 373 236 57 57 chr6 43996239 43996396 -145283158 + MER5A DNA MER1_type 4 160 -29 698 167 0 8 chr6 43996493 43996619 -145282935 + FLAM_C SINE Alu 11 135 -8 2226 106 3 0 chr6 43996621 43996940 -145282614 + AluSp SINE Alu 1 320 0 2249 117 3 0 chr6 43996943 43997243 -145282311 + AluSq SINE Alu 1 301 -12 33 25 0 0 chr6 43997243 43997283 -145282271 + AT_rich Low_complexity Low_complexity 1 40 0 403 224 37 28 chr6 43997286 43997393 -145282161 + MIR SINE MIR 97 204 -58 346 242 24 65 chr6 43997965 43998089 -145281465 - MIR SINE MIR -110 152 34 563 285 44 0 chr6 43998130 43998267 -145281287 + MIR SINE MIR 46 188 -74 1897 191 77 29 chr6 43998278 43998760 -145280794 - MLT1D LTR MaLR 0 505 1 331 267 55 0 chr6 43998804 43998904 -145280650 + MIR SINE MIR 54 155 -61 2184 123 3 0 chr6 43999242 43999552 -145280002 - AluY SINE Alu 0 311 1 1770 170 3 22 chr6 43999577 43999888 -145279666 + AluJb SINE Alu 1 305 -7 1743 172 3 7 chr6 43999922 44000207 -145279347 + AluJb SINE Alu 10 293 -19 968 184 38 0 chr6 44000207 44000414 -145279140 - L1MB5 LINE L1 -50 6124 5902 1714 166 7 11 chr6 44000790 44001096 -145278458 - AluSx SINE Alu 0 305 1 841 229 52 52 chr6 44001133 44001404 -145278150 + L2 LINE L2 3041 3311 -2 2441 87 0 3 chr6 44001963 44002261 -145277293 + AluSc SINE Alu 1 297 -12 736 179 0 0 chr6 44002261 44002378 -145277176 - FLAM_A SINE Alu -15 118 2 569 217 182 34 chr6 44002409 44002794 -145276760 - MLT1H LTR MaLR -7 588 93 2345 110 0 0 chr6 44002794 44003095 -145276459 - AluSx SINE Alu -11 301 1 21 0 0 0 chr6 44003104 44003125 -145276429 + AT_rich Low_complexity Low_complexity 1 21 0 2086 119 0 23 chr6 44003136 44003439 -145276115 - AluSq SINE Alu -17 296 1 275 313 76 30 chr6 44003470 44003601 -145275953 - MIR3 SINE MIR -45 163 27 3006 128 120 77 chr6 44003850 44004143 -145275411 - MER39 LTR ERV1 0 707 428 6791 118 73 40 chr6 44004143 44005380 -145274174 + MER52C LTR ERV1 1 1278 0 3006 128 120 77 chr6 44005380 44005759 -145273795 - MER39 LTR ERV1 -279 428 6 258 330 11 0 chr6 44005864 44005952 -145273602 + MIR SINE MIR 33 121 -87 1845 177 0 0 chr6 44006279 44006585 -145272969 + AluSx SINE Alu 1 306 0 256 130 65 0 chr6 44006815 44006861 -145272693 + MIR SINE MIR 114 162 -100 659 261 0 13 chr6 44006935 44007088 -145272466 + MIR SINE MIR 15 165 -97 2482 84 3 0 chr6 44007123 44007419 -145272135 + AluSp SINE Alu 1 297 -16 518 248 9 18 chr6 44007910 44008053 -145271501 + MIR SINE MIR 14 142 -66 2397 103 0 0 chr6 44008470 44008771 -145270783 + AluSg SINE Alu 1 301 -9 187 100 25 25 chr6 44008872 44008912 -145270642 + (GA)n Simple_repeat Simple_repeat 2 41 0 414 0 0 0 chr6 44009039 44009085 -145270469 + (TG)n Simple_repeat Simple_repeat 2 47 0 2027 148 0 13 chr6 44009616 44009921 -145269633 + AluJo SINE Alu 1 301 -11 269 230 90 30 chr6 44010001 44010101 -145269453 - MIR SINE MIR 0 262 157 288 0 0 0 chr6 44010106 44010138 -145269416 + (CAT)n Simple_repeat Simple_repeat 1 32 0 336 315 63 9 chr6 44010189 44010300 -145269254 - MIR SINE MIR -92 170 54 199 333 14 0 chr6 44010278 44010347 -145269207 - MIR SINE MIR -73 135 66 * 197 306 0 47 chr6 44010641 44010726 -145268828 + L2 LINE L2 3005 3085 -187 336 287 35 65 chr6 44011126 44011163 -145268391 + L2 LINE L2 3077 3114 -199 2488 59 10 0 chr6 44011163 44011470 -145268084 - AluY SINE Alu -1 310 1 336 287 35 65 chr6 44011470 44011518 -145268036 + L2 LINE L2 3114 3162 -151 2428 57 4 0 chr6 44011518 44011841 -145267713 + AluSp SINE Alu 1 324 0 336 287 35 65 chr6 44011841 44011983 -145267571 + L2 LINE L2 3162 3299 -14 221 300 167 42 chr6 44013787 44014050 -145265504 + L2 LINE L2 2977 3272 0 2572 72 3 0 chr6 44014178 44014482 -145265072 - AluSp SINE Alu -8 305 1 195 69 0 0 chr6 44015037 44015066 -145264488 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 273 281 120 52 chr6 44015147 44015496 -145264058 + L2 LINE L2 2851 3223 -49 377 247 173 37 chr6 44016118 44016389 -145263165 - LTR16A LTR ERVL -89 361 54 2403 68 4 0 chr6 44016800 44017103 -145262451 - AluSg1 SINE Alu 0 304 1 1178 142 71 5 chr6 44017144 44017341 -145262213 - AluJo SINE Alu -16 296 87 632 178 0 89 chr6 44017386 44017558 -145261996 - MER53 DNA DNA -3 186 33 2425 96 0 6 chr6 44017558 44017872 -145261682 - AluSq SINE Alu -1 312 1 632 178 0 89 chr6 44017872 44017901 -145261653 - MER53 DNA DNA -156 33 3 1903 85 0 4 chr6 44018678 44018925 -145260629 + AluSg SINE Alu 64 309 -1 724 185 159 15 chr6 44019513 44019708 -145259846 - MIR SINE MIR -31 231 9 245 311 19 0 chr6 44020227 44020333 -145259221 + MIR SINE MIR 30 137 -71 238 283 35 18 chr6 44020348 44020461 -145259093 - L1MC5 LINE L1 -36 7925 7811 1380 212 44 21 chr6 44020462 44020849 -145258705 - L1MC5 LINE L1 -232 7729 7334 1125 244 142 22 chr6 44020850 44021132 -145258422 + L2 LINE L2 2474 2721 -592 2301 118 3 0 chr6 44021132 44021436 -145258118 + AluSx SINE Alu 1 305 -7 1125 244 142 22 chr6 44021436 44021816 -145257738 + L2 LINE L2 2721 3224 -89 26 0 0 0 chr6 44021924 44021950 -145257604 + AT_rich Low_complexity Low_complexity 1 26 0 391 213 13 0 chr6 44021993 44022068 -145257486 - LTR16A1 LTR ERVL 0 457 382 759 240 30 70 chr6 44022102 44022373 -145257181 - LTR16A1 LTR ERVL -171 286 27 375 269 0 90 chr6 44022406 44022562 -145256992 - MIR SINE MIR -74 188 47 246 313 62 9 chr6 44022640 44022752 -145256802 - L2 LINE L2 -9 3304 3187 204 224 20 20 chr6 44022825 44022874 -145256680 - L2 LINE L2 -11 3302 3254 257 250 17 69 chr6 44022894 44023010 -145256544 - MIR SINE MIR -117 145 36 900 110 0 22 chr6 44023833 44024045 -145255509 + FLAM_C SINE Alu 1 209 0 475 247 76 36 chr6 44024239 44024362 -145255192 - L1MC5 LINE L1 -797 7164 7047 1962 156 0 13 chr6 44024362 44024677 -145254877 - AluJo SINE Alu -1 311 1 2281 109 0 3 chr6 44024679 44024983 -145254571 - AluSg SINE Alu -7 303 1 2456 100 0 0 chr6 44024985 44025295 -145254259 - AluSg SINE Alu 0 310 1 475 247 76 36 chr6 44025295 44025388 -145254166 - L1MC5 LINE L1 -914 7047 6933 1595 178 108 46 chr6 44025407 44025824 -145253730 - MSTB2 LTR MaLR 0 457 15 1688 159 29 63 chr6 44026063 44026378 -145253176 - AluJb SINE Alu -6 306 3 2335 119 0 0 chr6 44026438 44026749 -145252805 - AluSx SINE Alu 0 312 2 337 273 31 98 chr6 44026766 44026841 -145252713 - L1MB8 LINE L1 -295 5883 5805 2057 162 0 3 chr6 44026841 44027150 -145252404 - AluJb SINE Alu -4 308 1 337 273 31 98 chr6 44027150 44027268 -145252286 - L1MB8 LINE L1 -373 5805 5703 674 282 14 14 chr6 44027319 44027535 -145252019 - L1MB8 LINE L1 -479 5691 5476 498 153 87 153 chr6 44027560 44027679 -145251875 - L1MC5 LINE L1 -997 6964 6839 1974 136 3 17 chr6 44027679 44027974 -145251580 - AluSx SINE Alu -21 291 1 498 153 87 153 chr6 44027974 44028025 -145251529 - L1MC5 LINE L1 -1122 6839 6786 2268 65 44 3 chr6 44028025 44028319 -145251235 + AluY SINE Alu 1 306 -5 498 153 87 153 chr6 44028319 44028401 -145251153 - L1MC5 LINE L1 -1175 6786 6728 2821 147 19 30 chr6 44028415 44028698 -145250856 - L1MB7 LINE L1 -16 6168 5893 2407 103 3 0 chr6 44028698 44029010 -145250544 - AluSq SINE Alu 0 313 1 2821 147 19 30 chr6 44029010 44029297 -145250257 - L1MB7 LINE L1 -291 5893 5604 2253 108 0 22 chr6 44029297 44029611 -145249943 - AluSx SINE Alu -5 307 1 2310 109 0 7 chr6 44029626 44029930 -145249624 - AluJb SINE Alu -10 302 1 240 292 33 58 chr6 44029993 44030113 -145249441 - MIR3 SINE MIR -31 177 61 2505 80 3 13 chr6 44030260 44030573 -145248981 - AluSp SINE Alu -3 310 1 354 219 44 44 chr6 44030678 44030792 -145248762 + MER103 DNA DNA 4 117 -49 3427 144 8 14 chr6 44030798 44031417 -145248137 + L1MC1 LINE L1 5719 6333 0 265 292 169 27 chr6 44031417 44031718 -145247836 - L2 LINE L2 -134 3179 2836 24 53 0 0 chr6 44031812 44031850 -145247704 + AT_rich Low_complexity Low_complexity 1 38 0 326 117 0 50 chr6 44031850 44031910 -145247644 - HY4 scRNA scRNA 0 93 37 480 279 333 13 chr6 44031910 44032739 -145246815 - L2 LINE L2 -611 2703 1610 245 289 211 0 chr6 44032951 44033065 -145246489 - MIR SINE MIR -73 189 52 202 262 16 0 chr6 44033155 44033216 -145246338 - MIR SINE MIR -77 131 70 185 182 0 0 chr6 44033439 44033472 -145246082 + MER5B DNA MER1_type 7 39 -139 1828 163 0 14 chr6 44033509 44033797 -145245757 + AluJb SINE Alu 1 284 -28 711 239 75 0 chr6 44033848 44034098 -145245456 - L1ME3 LINE L1 -86 6076 5801 1023 259 89 22 chr6 44034102 44034472 -145245082 - LTR16A LTR ERVL -4 446 52 282 318 19 52 chr6 44034713 44034921 -145244633 - MERVL LTR ERVL -228 5257 5059 361 349 29 12 chr6 44035170 44035342 -145244212 - MERVL LTR ERVL -926 4838 4664 742 152 53 0 chr6 44035352 44035484 -145244070 - FLAM_C SINE Alu -4 139 1 1009 129 84 44 chr6 44035486 44035523 -145244031 - L1MA8 LINE L1 0 6291 6257 2046 123 0 10 chr6 44035523 44035823 -145243731 + AluJb SINE Alu 1 297 -15 1009 129 84 44 chr6 44035823 44036010 -145243544 - L1MA8 LINE L1 -34 6257 6058 2038 292 88 20 chr6 44036149 44036705 -145242849 - HERV16 LTR ERVL -2763 2233 1717 1477 157 3 70 chr6 44036705 44036991 -145242563 - AluJo SINE Alu -45 267 1 2038 292 88 20 chr6 44036991 44037526 -145242028 - HERV16 LTR ERVL -3279 1717 1044 442 316 73 31 chr6 44037654 44037942 -145241612 - HERV16 LTR ERVL -4450 546 247 1474 123 67 27 chr6 44038204 44038230 -145241324 - L1P4 LINE L1 -364 5802 5778 2416 88 0 0 chr6 44038230 44038536 -145241018 - AluSq SINE Alu -7 306 1 1474 123 67 27 chr6 44038536 44038809 -145240745 - L1P4 LINE L1 -387 5779 5491 1072 137 0 58 chr6 44038810 44039000 -145240554 - AluSg/x SINE Alu 0 310 132 2334 88 7 0 chr6 44039000 44039306 -145240248 - AluSp SINE Alu -5 308 1 961 191 40 1 chr6 44039306 44039570 -145239984 + L1PA16 LINE L1 5858 6161 0 509 278 183 27 chr6 44039599 44039862 -145239692 - LTR16A LTR ERVL -100 357 54 1006 273 35 3 chr6 44039922 44040233 -145239321 - L1ME LINE L1 -386 5776 5456 296 290 114 40 chr6 44040571 44040747 -145238807 - MIR SINE MIR -47 215 27 528 203 0 77 chr6 44040992 44041063 -145238491 - MER5A DNA MER1_type -53 136 80 1721 171 24 3 chr6 44041063 44041361 -145238193 - AluJo SINE Alu -8 304 1 528 203 0 77 chr6 44041361 44041432 -145238122 - MER5A DNA MER1_type -109 80 5 194 265 48 133 chr6 44041969 44042078 -145237476 + MER5A DNA MER1_type 37 129 -60 2335 90 0 0 chr6 44042078 44042377 -145237177 - AluSx SINE Alu -13 299 1 194 265 48 133 chr6 44042377 44042433 -145237121 + MER5A DNA MER1_type 129 188 -1 189 216 0 0 chr6 44042619 44042656 -145236898 + MIR SINE MIR 113 149 -113 239 238 89 69 chr6 44043282 44043383 -145236171 + MIR3 SINE MIR 106 208 0 396 232 58 100 chr6 44043418 44043556 -145235998 + MIR SINE MIR 24 153 -109 2037 114 6 19 chr6 44043556 44043872 -145235682 - AluSx SINE Alu 0 312 1 396 232 58 100 chr6 44043872 44043923 -145235631 + MIR SINE MIR 153 205 -57 * 586 230 22 7 chr6 44043921 44044056 -145235498 - MIR SINE MIR 0 262 126 355 205 60 0 chr6 44044558 44044641 -145234913 - MER5B DNA MER1_type 0 178 91 2181 93 0 0 chr6 44044657 44044984 -145234570 - AluSc SINE Alu 0 327 1 563 195 0 0 chr6 44044984 44045102 -145234452 - L1ME LINE L1 -814 5332 5215 1911 159 7 3 chr6 44045140 44045442 -145234112 + AluJb SINE Alu 1 303 -9 1862 154 44 29 chr6 44045458 44045509 -145234045 + L1M4 LINE L1 4924 4973 -1207 3208 126 41 54 chr6 44045509 44046043 -145233511 - MER1A DNA MER1_type 0 527 1 1862 154 44 29 chr6 44046043 44046136 -145233418 + L1M4 LINE L1 4973 5063 -1117 2168 117 0 7 chr6 44046136 44046445 -145233109 + AluSx SINE Alu 1 307 -5 1862 154 44 29 chr6 44046445 44046881 -145232673 + L1M4 LINE L1 5063 5502 -678 262 182 0 0 chr6 44046884 44046928 -145232626 + MER57A LTR ERV1 301 344 -59 415 179 12 3 chr6 44046937 44047034 -145232520 + L1M4 LINE L1 5478 5573 -601 4811 93 17 14 chr6 44047034 44047799 -145231755 - Tigger1 DNA MER2_type -1086 1332 566 313 163 0 8 chr6 44047814 44047878 -145231676 - Alu SINE Alu -249 53 1 321 244 67 67 chr6 44047977 44048112 -145231442 - MIR3 SINE MIR -30 178 44 229 238 79 0 chr6 44048293 44048356 -145231198 + MER5A DNA MER1_type 6 73 -116 2144 107 3 10 chr6 44048374 44048682 -145230872 + AluSg SINE Alu 1 306 -4 427 276 126 60 chr6 44048896 44049083 -145230471 + MLT1H1 LTR MaLR 184 357 -198 2417 68 0 3 chr6 44049083 44049390 -145230164 - AluY SINE Alu -5 306 1 427 276 126 60 chr6 44049390 44049550 -145230004 + MLT1H1 LTR MaLR 357 554 -1 348 260 31 10 chr6 44049551 44049647 -145229907 + MER5A DNA MER1_type 92 189 0 1295 145 0 26 chr6 44049696 44049923 -145229631 + AluJo SINE Alu 92 312 0 426 254 98 71 chr6 44050366 44050590 -145228964 - L1ME2 LINE L1 -1 6163 5932 * 2613 128 38 75 chr6 44050588 44050700 -145228854 - L1MDa LINE L1 -4137 2403 2288 189 107 0 0 chr6 44050700 44050728 -145228826 + (TCCA)n Simple_repeat Simple_repeat 1 28 0 2613 128 38 75 chr6 44050728 44050871 -145228683 - L1MDa LINE L1 -4252 2288 2141 225 0 0 0 chr6 44050871 44050896 -145228658 + (TG)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr6 44050895 44050916 -145228638 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 2613 128 38 75 chr6 44050896 44050916 -145228638 - L1MDa LINE L1 -4399 2141 2122 2095 108 3 0 chr6 44050916 44051204 -145228350 - AluSq SINE Alu -13 300 12 2613 128 38 75 chr6 44051204 44051601 -145227953 - L1MDa LINE L1 -4418 2122 1773 207 0 0 0 chr6 44051603 44051626 -145227928 + (TTA)n Simple_repeat Simple_repeat 2 24 0 886 165 78 73 chr6 44051631 44051837 -145227717 - AluJo SINE Alu -20 292 86 4247 203 130 50 chr6 44051837 44052256 -145227298 - L1MDa LINE L1 -4760 1780 1396 1943 133 7 10 chr6 44052256 44052556 -145226998 - AluSx SINE Alu -13 299 1 4247 203 130 50 chr6 44052556 44052839 -145226715 - L1MDa LINE L1 -5144 1396 1137 1771 180 10 0 chr6 44052839 44053139 -145226415 - AluJb SINE Alu -9 303 1 4247 203 130 50 chr6 44053139 44054067 -145225487 - L1MDa LINE L1 -5403 1137 18 397 214 11 0 chr6 44054068 44054157 -145225397 - L1ME2 LINE L1 -213 5949 5860 3523 134 19 28 chr6 44054167 44054722 -145224832 - L1MB1 LINE L1 -1 6167 5609 183 42 0 0 chr6 44054722 44054746 -145224808 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2100 103 0 3 chr6 44054746 44055028 -145224526 - AluSq SINE Alu -31 282 2 3523 134 19 28 chr6 44055028 44055051 -145224503 - L1MB1 LINE L1 -557 5611 5593 877 138 0 29 chr6 44055053 44055191 -145224363 - AluJo SINE Alu -178 134 1 4111 159 27 47 chr6 44055191 44056484 -145223070 - L1MB1 LINE L1 -561 5607 4354 359 206 76 0 chr6 44056547 44056639 -145222915 - L1ME2 LINE L1 -295 5875 5777 413 250 0 24 chr6 44056680 44056804 -145222750 - L1ME2 LINE L1 -364 5798 5678 863 284 52 66 chr6 44056815 44057338 -145222216 + L2 LINE L2 2605 3133 -180 2030 113 10 3 chr6 44057338 44057631 -145221923 - AluSx SINE Alu -11 301 7 863 284 52 66 chr6 44057631 44057809 -145221745 + L2 LINE L2 3133 3312 -1 193 94 31 0 chr6 44057919 44057951 -145221603 + MER5A DNA MER1_type 43 75 -114 * 375 270 0 0 chr6 44057944 44058033 -145221521 - MER5A DNA MER1_type -80 109 21 232 280 231 28 chr6 44058017 44058160 -145221394 + MIR SINE MIR 80 251 -11 * 378 129 0 0 chr6 44058657 44058719 -145220835 + (TG)n Simple_repeat Simple_repeat 2 63 0 277 312 18 46 chr6 44059464 44059573 -145219981 + MIR SINE MIR 32 137 -71 501 267 42 0 chr6 44059655 44059775 -145219779 + L2 LINE L2 3188 3312 -1 201 311 74 41 chr6 44060900 44061022 -145218532 + MIR SINE MIR 59 184 -78 1692 256 81 12 chr6 44063640 44064522 -145215032 + L2 LINE L2 2301 3249 -64 891 202 130 0 chr6 44065100 44065347 -145214207 - LTR16C LTR ERVL -2 489 211 348 299 108 25 chr6 44065351 44065555 -145213999 + L2 LINE L2 3079 3299 -14 633 170 101 57 chr6 44066349 44066508 -145213046 - MIR SINE MIR -90 172 7 685 231 91 20 chr6 44067105 44067304 -145212250 + MIR SINE MIR 47 259 -3 184 220 20 20 chr6 44067537 44067587 -145211967 - L2 LINE L2 -16 3256 3207 534 344 5 27 chr6 44067650 44067874 -145211680 - L2 LINE L2 0 3313 3095 515 332 127 22 chr6 44068356 44068585 -145210969 - MIR SINE MIR -1 261 9 361 303 180 0 chr6 44068596 44068774 -145210780 + MIR SINE MIR 47 256 -6 314 315 290 6 chr6 44068846 44069008 -145210546 + MIR SINE MIR 50 257 -5 735 289 36 24 chr6 44069048 44069126 -145210428 + MIR SINE MIR 6 82 -180 3161 144 40 33 chr6 44069126 44069158 -145210396 - MLT2B3 LTR ERVL 0 554 524 308 83 21 0 chr6 44069158 44069206 -145210348 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 3161 144 40 33 chr6 44069206 44069723 -145209831 - MLT2B3 LTR ERVL -30 524 1 735 289 36 24 chr6 44069723 44069897 -145209657 + MIR SINE MIR 82 261 -1 271 331 147 0 chr6 44069995 44070131 -145209423 + MIR SINE MIR 107 262 0 309 229 175 0 chr6 44070554 44070677 -145208877 - MIR SINE MIR -54 208 59 542 262 96 12 chr6 44071204 44071391 -145208163 - L1MC/D LINE L1 -435 5807 5604 219 88 0 0 chr6 44073804 44073838 -145205716 + (CGGGGG)n Simple_repeat Simple_repeat 6 39 0 835 217 99 11 chr6 44074316 44074581 -145204973 - L1MC3 LINE L1 0 8042 7692 245 267 53 0 chr6 44074618 44074693 -145204861 - L1MC4 LINE L1 -365 7677 7599 275 321 95 7 chr6 44074709 44074846 -145204708 + L2 LINE L2 3162 3310 -3 293 306 119 68 chr6 44074879 44075248 -145204306 - L2 LINE L2 -9 3263 2876 2299 107 31 6 chr6 44077358 44077685 -145201869 - MER1B DNA MER1_type 0 337 3 847 225 97 18 chr6 44077739 44077966 -145201588 - MIR SINE MIR -15 247 3 182 278 167 22 chr6 44082494 44082584 -145196970 + MIR SINE MIR 41 143 -65 569 232 103 0 chr6 44083648 44083803 -145195751 + MIR SINE MIR 21 191 -71 271 206 27 14 chr6 44084279 44084352 -145195202 + L2 LINE L2 2991 3064 -208 226 237 79 13 chr6 44086368 44086444 -145193110 - MIR3 SINE MIR -7 201 121 1836 161 7 3 chr6 44086642 44086947 -145192607 + AluJb SINE Alu 1 306 -6 268 309 66 28 chr6 44086997 44087178 -145192376 + L1MC4a LINE L1 5888 6075 -1733 206 236 0 0 chr6 44087247 44087302 -145192252 + A-rich Low_complexity Low_complexity 1 55 0 271 283 0 50 chr6 44088202 44088301 -145191253 - MIR3 SINE MIR -3 205 112 322 333 49 0 chr6 44089100 44089223 -145190331 + L2 LINE L2 3158 3286 -27 2089 105 10 3 chr6 44089240 44089535 -145190019 + AluSx SINE Alu 11 307 -5 2474 54 3 13 chr6 44089535 44089849 -145189705 + AluY SINE Alu 1 311 0 837 230 104 142 chr6 44089874 44090395 -145189159 - L2 LINE L2 -6 3307 2807 200 229 229 0 chr6 44091420 44091481 -145188073 - MIR SINE MIR -70 192 118 2005 105 14 20 chr6 44092257 44092552 -145187002 + AluSq SINE Alu 7 299 -14 728 271 44 0 chr6 44092721 44092902 -145186652 + MER5A DNA MER1_type 1 189 0 206 286 104 0 chr6 44092903 44092980 -145186574 + L3b LINE CR1 1493 1577 -6 453 272 210 6 chr6 44093135 44093297 -145186257 - MER91A DNA MER1_type -1 195 1 1833 150 35 3 chr6 44094004 44094290 -145185264 - AluJb SINE Alu -17 295 1 250 298 0 0 chr6 44094291 44094348 -145185206 - MIR SINE MIR -102 160 104 250 279 2 0 chr6 44094797 44094862 -145184692 - MIR SINE MIR -54 154 88 241 292 192 8 chr6 44095143 44095263 -145184291 - MIR3 SINE MIR -15 193 52 250 283 111 10 chr6 44095525 44095624 -145183930 - MIR SINE MIR -76 132 24 244 318 140 9 chr6 44098053 44098160 -145181394 + MIR3 SINE MIR 88 208 0 352 299 51 13 chr6 44100079 44100236 -145179318 + MIR SINE MIR 51 213 -49 245 271 0 60 chr6 44100290 44100423 -145179131 + GA-rich Low_complexity Low_complexity 2 126 0 209 313 16 0 chr6 44100589 44100653 -145178901 + L2 LINE L2 2990 3054 -218 236 315 41 0 chr6 44100663 44100736 -145178818 - MIR3 SINE MIR -50 158 83 394 196 20 0 chr6 44101667 44101769 -145177785 + (CA)n Simple_repeat Simple_repeat 2 105 0 192 152 0 0 chr6 44103111 44103144 -145176410 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 295 228 55 79 chr6 44103244 44103371 -145176183 - L2 LINE L2 -128 3144 3021 2103 98 24 3 chr6 44104434 44104721 -145174833 + AluSq SINE Alu 1 293 -20 898 154 0 0 chr6 44104795 44104938 -145174616 - FLAM_C SINE Alu 0 143 1 1172 209 105 48 chr6 44104938 44105311 -145174243 + MLT1J LTR MaLR 61 454 -57 185 286 0 0 chr6 44105739 44105788 -145173766 + MIR SINE MIR 59 107 -155 2021 113 0 0 chr6 44105984 44106259 -145173295 - AluSx SINE Alu 0 312 38 245 304 78 17 chr6 44106285 44106400 -145173154 - MIR SINE MIR -63 145 24 241 374 0 8 chr6 44106642 44106765 -145172789 + MLT1K LTR MaLR 219 340 -248 314 281 33 12 chr6 44107177 44107322 -145172232 + MIR3 SINE MIR 8 152 -68 225 290 242 0 chr6 44107743 44107867 -145171687 - MIR3 SINE MIR -33 175 22 * 245 309 151 26 chr6 44107845 44107997 -145171557 - MIR SINE MIR -36 226 56 564 338 139 12 chr6 44108859 44109182 -145170372 - L2 LINE L2 0 3313 2950 449 295 111 46 chr6 44109281 44109498 -145170056 - MIR SINE MIR -24 238 8 674 233 95 57 chr6 44110250 44110508 -145169046 - L2 LINE L2 -2 3311 3039 1909 88 19 88 chr6 44110508 44110826 -145168728 - AluSx SINE Alu -10 302 7 674 233 95 57 chr6 44110826 44110863 -145168691 - L2 LINE L2 -274 3039 3005 388 318 53 32 chr6 44110890 44111079 -145168475 - MIR3 SINE MIR 0 208 16 582 263 94 5 chr6 44111757 44111978 -145167576 + MIR SINE MIR 3 248 -14 272 308 11 0 chr6 44112244 44112335 -145167219 - MIR SINE MIR -57 205 114 241 260 0 0 chr6 44112718 44112745 -145166809 + polypurine Low_complexity Low_complexity 1 27 -333 1415 167 101 17 chr6 44112745 44113033 -145166521 + AluJo SINE Alu 1 312 0 241 260 0 0 chr6 44113033 44113078 -145166476 + polypurine Low_complexity Low_complexity 26 360 0 2074 123 0 0 chr6 44113108 44113424 -145166130 + AluSx SINE Alu 1 316 0 186 43 0 0 chr6 44113884 44113907 -145165647 + (CA)n Simple_repeat Simple_repeat 2 24 0 299 268 103 0 chr6 44114350 44114447 -145165107 - L2 LINE L2 -10 3303 3197 2336 74 0 16 chr6 44114466 44114776 -145164778 - AluSx SINE Alu -7 305 1 195 337 81 0 chr6 44114814 44114900 -145164654 + L2 LINE L2 3146 3238 -34 226 357 92 0 chr6 44115384 44115482 -145164072 - MIR3 SINE MIR -87 121 15 348 284 43 0 chr6 44115893 44116009 -145163545 - MIR3 SINE MIR -7 201 81 1057 208 20 28 chr6 44116023 44116273 -145163281 - MIR SINE MIR -13 249 2 699 225 91 35 chr6 44116378 44116609 -145162945 - MIR SINE MIR 0 262 19 1093 232 77 32 chr6 44117023 44117308 -145162246 - AluJo SINE Alu 0 302 5 280 299 175 22 chr6 44117593 44117730 -145161824 + MIR SINE MIR 84 241 -21 1848 83 132 0 chr6 44117780 44118045 -145161509 - AluSg SINE Alu -10 300 1 314 301 66 22 chr6 44118219 44118355 -145161199 + MIR3 SINE MIR 35 176 -32 395 300 29 43 chr6 44118476 44118653 -145160901 - MIR SINE MIR -50 212 35 272 310 106 9 chr6 44118983 44119096 -145160458 - MIR SINE MIR -80 182 59 216 211 0 0 chr6 44119364 44119402 -145160152 - MIR SINE MIR -111 151 114 384 246 51 42 chr6 44119618 44119736 -145159818 - MIR SINE MIR -74 188 70 2320 50 40 7 chr6 44119797 44120097 -145159457 + AluY SINE Alu 1 310 -1 265 306 118 14 chr6 44120529 44120673 -145158881 - MIR SINE MIR -90 172 14 222 313 55 16 chr6 44120746 44120874 -145158680 + MIR SINE MIR 84 216 -46 214 305 0 0 chr6 44121075 44121134 -145158420 + MIR SINE MIR 91 149 -113 330 270 61 26 chr6 44121997 44122112 -145157442 + L2 LINE L2 3109 3227 -45 2090 120 13 0 chr6 44122387 44122687 -145156867 - AluSx SINE Alu -8 304 1 1788 172 3 0 chr6 44123494 44123790 -145155764 - AluJo SINE Alu -15 297 1 348 272 93 26 chr6 44123813 44124112 -145155442 + MLT1J LTR MaLR 115 507 -4 2541 64 0 0 chr6 44124129 44124440 -145155114 + AluY SINE Alu 1 311 0 2193 112 0 3 chr6 44124798 44125110 -145154444 + AluSx SINE Alu 1 311 -1 288 337 51 0 chr6 44125376 44125474 -145154080 - MIR3 SINE MIR -54 154 52 554 255 7 7 chr6 44125525 44125670 -145153884 + L2 LINE L2 2935 3079 -234 751 179 0 0 chr6 44125670 44125787 -145153767 + AluJo/FLAM SINE Alu 1 117 -195 2238 106 0 10 chr6 44125788 44126099 -145153455 - AluSx SINE Alu -4 308 1 387 266 206 42 chr6 44126133 44126347 -145153207 + L2 LINE L2 3065 3313 0 493 204 15 8 chr6 44126705 44126837 -145152717 + ALR/Alpha Satellite centromeric 36 168 -4 573 305 16 0 chr6 44127078 44127268 -145152286 + L1ME3 LINE L1 5968 6160 -2 1558 174 16 38 chr6 44128537 44128853 -145150701 + AluJb SINE Alu 1 309 -3 2413 51 3 0 chr6 44129081 44129374 -145150180 - AluY SINE Alu -15 296 3 523 307 71 10 chr6 44129848 44130062 -145149492 - MIR SINE MIR 0 262 38 1683 249 159 35 chr6 44130936 44131874 -145147680 + L2 LINE L2 2171 3312 -1 269 287 81 43 chr6 44131941 44132150 -145147404 + L2 LINE L2 2894 3110 -162 330 187 93 13 chr6 44132578 44132653 -145146901 + MER5A DNA MER1_type 26 106 -83 193 277 19 57 chr6 44133770 44133864 -145145690 + MIR SINE MIR 111 149 -59 265 286 88 23 chr6 44137661 44137832 -145141722 - MIR SINE MIR -3 259 78 1589 196 0 24 chr6 44137832 44138123 -145141431 + AluJb SINE Alu 1 284 -28 2282 80 35 0 chr6 44138123 44138412 -145141142 - AluY SINE Alu -12 299 1 181 323 65 0 chr6 44138821 44138914 -145140640 - MIR SINE MIR -8 254 156 272 159 0 0 chr6 44139163 44139207 -145140347 + MADE1 DNA Mariner 1 44 -36 26 0 0 0 chr6 44139207 44139233 -145140321 + AT_rich Low_complexity Low_complexity 1 26 0 314 77 0 0 chr6 44139245 44139284 -145140270 - Alu SINE Alu -263 39 1 * 371 105 0 18 chr6 44139284 44139337 -145140217 + MADE1 DNA Mariner 29 80 0 1464 189 17 40 chr6 44139516 44139812 -145139742 + AluJo SINE Alu 2 290 -22 22 0 0 0 chr6 44139835 44139857 -145139697 + AT_rich Low_complexity Low_complexity 1 22 0 610 162 50 0 chr6 44141545 44141644 -145137910 - AluJb SINE Alu -207 105 2 631 94 0 0 chr6 44142907 44142992 -145136562 - AluSg/x SINE Alu -38 274 190 1776 122 16 4 chr6 44142992 44143237 -145136317 - AluSx SINE Alu -64 248 1 232 185 46 0 chr6 44143538 44143646 -145135908 + (TCCA)n Simple_repeat Simple_repeat 2 114 0 218 240 162 78 chr6 44145741 44145895 -145133659 + MIR SINE MIR 14 180 -82 2525 259 66 11 chr6 44145973 44145999 -145133555 + L2 LINE L2 2135 2158 -1156 825 186 8 103 chr6 44145999 44146241 -145133313 + MER20 DNA MER1_type 1 219 0 2525 259 66 11 chr6 44146241 44147013 -145132541 + L2 LINE L2 2158 2977 -337 413 291 82 48 chr6 44147498 44147704 -145131850 + MIR SINE MIR 2 214 -48 334 226 57 65 chr6 44147708 44147832 -145131722 + HAL1 LINE L1 2385 2507 0 212 200 60 0 chr6 44147844 44147894 -145131660 + MIR SINE MIR 204 256 -6 1144 74 0 0 chr6 44149854 44149989 -145129565 + AluSq/x SINE Alu 1 135 -178 1949 114 4 4 chr6 44149991 44150264 -145129290 + AluYa5 SINE Alu 16 288 -23 196 267 17 17 chr6 44150368 44150428 -145129126 + L2 LINE L2 3119 3178 -94 2444 83 3 0 chr6 44151648 44151960 -145127594 + AluSq SINE Alu 1 313 0 2202 134 0 3 chr6 44151969 44152282 -145127272 + AluSx SINE Alu 1 312 0 237 229 0 43 chr6 44153739 44153809 -145125745 - MER5A DNA MER1_type -88 101 35 186 333 0 13 chr6 44153756 44153831 -145125723 + MER5A DNA MER1_type 115 188 -1 * 387 221 177 0 chr6 44153971 44154084 -145125470 + MER94 DNA DNA 1 133 -1 2778 135 107 68 chr6 44154186 44154449 -145125105 - MER7C DNA MER2_type -2426 602 351 1635 188 0 3 chr6 44154449 44154731 -145124823 + AluJo SINE Alu 17 297 -15 1952 131 37 13 chr6 44154735 44155033 -145124521 + AluSx SINE Alu 1 305 -7 2778 135 107 68 chr6 44155033 44155342 -145124212 - MER7C DNA MER2_type -2679 349 2 2117 140 0 3 chr6 44155830 44156123 -145123431 + AluSx SINE Alu 1 292 -20 266 146 0 0 chr6 44156208 44156249 -145123305 + Alu SINE Alu 251 291 -11 2550 70 0 10 chr6 44156500 44156814 -145122740 + AluY SINE Alu 1 311 0 339 235 227 25 chr6 44157117 44157236 -145122318 - MER46A DNA MER2_type -90 146 4 * 1151 151 21 0 chr6 44157236 44157327 -145122227 + MER46A DNA MER2_type 142 236 0 639 187 0 0 chr6 44157553 44157660 -145121894 + FLAM_C SINE Alu 2 108 -35 234 91 0 0 chr6 44157665 44157698 -145121856 + (CCCCCT)n Simple_repeat Simple_repeat 5 37 0 796 138 22 36 chr6 44157726 44157864 -145121690 - FLAM_C SINE Alu -1 142 7 259 294 59 25 chr6 44158343 44158462 -145121092 - MIR3 SINE MIR -41 167 45 1472 175 58 55 chr6 44158755 44159063 -145120491 + AluJb SINE Alu 1 309 -3 217 324 14 0 chr6 44159072 44159143 -145120411 - MIR3 SINE MIR -13 195 124 1739 174 0 24 chr6 44159248 44159384 -145120170 + AluSx SINE Alu 1 139 -173 2555 60 0 3 chr6 44159384 44159685 -145119869 + AluY SINE Alu 1 300 -11 1739 174 0 24 chr6 44159685 44159876 -145119678 + AluSx SINE Alu 139 312 0 3678 206 89 102 chr6 44160129 44160764 -145118790 + L1MC3 LINE L1 6350 6991 -794 2325 99 0 0 chr6 44160764 44161068 -145118486 + AluY SINE Alu 1 304 -7 3678 206 89 102 chr6 44161068 44161225 -145118329 + L1MC3 LINE L1 6991 7148 -637 338 156 18 128 chr6 44161225 44161334 -145118220 + MLT1F1 LTR MaLR 35 131 -436 3678 206 89 102 chr6 44161334 44161867 -145117687 + L1MC3 LINE L1 7148 7766 -19 2243 119 0 0 chr6 44161937 44162240 -145117314 + AluSx SINE Alu 1 303 -9 733 208 25 0 chr6 44164798 44164957 -145114597 + LTR65 LTR ERV1 1 163 -506 389 268 34 48 chr6 44165086 44165299 -145114255 + LTR65 LTR ERV1 396 649 -17 911 266 45 34 chr6 44165483 44165840 -145113714 - L2 LINE L2 -1226 2088 1728 405 256 150 58 chr6 44165854 44165986 -145113568 + L1MC4a LINE L1 5705 5823 -1985 1697 151 17 34 chr6 44165986 44166278 -145113276 - AluJo SINE Alu -25 287 1 405 256 150 58 chr6 44166278 44166332 -145113222 + L1MC4a LINE L1 5823 5871 -1937 2334 95 20 0 chr6 44166332 44166627 -145112927 + AluSx SINE Alu 1 301 -11 405 256 150 58 chr6 44166627 44166872 -145112682 + L1MC4a LINE L1 5871 6177 -1631 187 211 0 0 chr6 44166913 44166951 -145112603 + L2 LINE L2 3214 3251 -21 28 38 0 19 chr6 44167160 44167180 -145112374 + AT_rich Low_complexity Low_complexity 1 20 -32 1329 224 43 11 chr6 44167180 44167457 -145112097 + AluJo SINE Alu 2 287 -25 28 38 0 19 chr6 44167457 44167489 -145112065 + AT_rich Low_complexity Low_complexity 20 52 0 452 291 91 19 chr6 44167812 44168022 -145111532 + L1MC5 LINE L1 6995 7219 -742 4538 156 78 39 chr6 44168124 44168200 -145111354 + L1MB3 LINE L1 4663 4735 -1448 2087 105 3 14 chr6 44168200 44168495 -145111059 + AluSx SINE Alu 1 292 -20 4538 156 78 39 chr6 44168495 44169875 -145109679 + L1MB3 LINE L1 4735 6178 -5 2203 111 20 0 chr6 44170457 44170755 -145108799 - AluSx SINE Alu -8 304 1 2096 122 6 31 chr6 44170938 44171257 -145108297 - AluSq SINE Alu -2 311 1 2414 82 0 7 chr6 44172470 44172773 -145106781 - AluY SINE Alu -10 301 1 1648 200 0 17 chr6 44172797 44173097 -145106457 - AluJb SINE Alu -14 298 4 3896 151 70 21 chr6 44173102 44173349 -145106205 - L1MC1 LINE L1 -11 6322 6088 2295 96 3 0 chr6 44173349 44173640 -145105914 + AluSg SINE Alu 1 292 -18 3896 151 70 21 chr6 44173640 44174328 -145105226 - L1MC1 LINE L1 -245 6088 5324 2228 112 3 0 chr6 44174328 44174624 -145104930 - AluSp SINE Alu -14 299 3 2080 127 0 42 chr6 44174636 44174944 -145104610 - AluSx SINE Alu -17 295 1 2379 56 0 30 chr6 44174953 44175255 -145104299 - AluY SINE Alu -18 293 1 1465 242 32 27 chr6 44175257 44175457 -145104097 - L1M4 LINE L1 -2366 3780 3582 1620 186 41 0 chr6 44175457 44175748 -145103806 + AluJb SINE Alu 1 303 -9 1465 242 32 27 chr6 44175748 44175989 -145103565 - L1M4 LINE L1 -2564 3582 3337 635 170 10 0 chr6 44175990 44176090 -145103464 - AluJ/FLAM SINE Alu -210 102 2 2080 114 71 8 chr6 44176090 44176458 -145103096 - L1MCa LINE L1 -4827 1599 1209 3087 163 54 2 chr6 44176458 44176960 -145102594 - MER44D DNA MER2_type 0 605 23 2267 101 3 0 chr6 44177008 44177304 -145102250 - AluSc SINE Alu -12 297 1 751 203 0 0 chr6 44177309 44177437 -145102117 - FLAM_A SINE Alu -5 128 1 2348 154 68 8 chr6 44177438 44177952 -145101602 - L1MCa LINE L1 -5221 1205 631 2097 128 0 3 chr6 44177955 44178252 -145101302 - AluSx SINE Alu -16 296 1 984 233 54 0 chr6 44178289 44178535 -145101019 + L1MB5 LINE L1 5908 6174 0 324 276 125 61 chr6 44178568 44178782 -145100772 + L1ME4a LINE L1 5789 6031 -90 2286 112 0 0 chr6 44178782 44179078 -145100476 + AluSx SINE Alu 1 296 -16 324 276 125 61 chr6 44179078 44179174 -145100380 + L1ME4a LINE L1 6031 6119 -2 1751 82 141 37 chr6 44179177 44179446 -145100108 - AluSc SINE Alu -12 297 1 2228 199 61 21 chr6 44179520 44180176 -145099378 + L1MCa LINE L1 2365 3039 -3387 1080 164 5 32 chr6 44180198 44180387 -145099167 + AluJo SINE Alu 7 190 -122 219 186 0 0 chr6 44180408 44180451 -145099103 + A-rich Low_complexity Low_complexity 1 43 0 503 130 0 11 chr6 44180452 44180544 -145099010 + (GGGA)n Simple_repeat Simple_repeat 4 94 0 365 156 0 0 chr6 44180544 44180608 -145098946 + L1MCa LINE L1 3046 3109 -3317 686 156 16 16 chr6 44180615 44180737 -145098817 + AluJo SINE Alu 15 136 -176 1773 199 115 66 chr6 44180777 44181505 -145098049 + L1MCa LINE L1 3121 3884 -2542 360 145 0 72 chr6 44181540 44181609 -145097945 + Charlie5 DNA MER1_type 1 64 -2548 283 89 54 0 chr6 44181611 44181667 -145097887 + Charlie5 DNA MER1_type 2428 2486 -126 1777 167 7 13 chr6 44181871 44182170 -145097384 + AluJb SINE Alu 1 297 -15 309 109 0 0 chr6 44182170 44182216 -145097338 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 2071 126 3 26 chr6 44182236 44182545 -145097009 - AluSx SINE Alu -10 302 1 1278 199 63 24 chr6 44182599 44182886 -145096668 + AluJo SINE Alu 1 298 -14 1975 135 0 3 chr6 44184454 44184811 -145094743 - AluSx SINE Alu 0 356 1 1905 125 57 27 chr6 44185055 44185351 -145094203 + AluJb SINE Alu 1 305 -7 259 271 299 9 chr6 44186464 44186571 -145092983 + MIR SINE MIR 103 240 -22 283 248 171 47 chr6 44186757 44186886 -145092668 + MER20B DNA MER1_type 45 189 -594 2303 79 4 0 chr6 44187054 44187333 -145092221 + AluSc SINE Alu 1 280 -29 288 77 0 0 chr6 44187333 44187372 -145092182 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 2359 102 0 0 chr6 44187422 44187725 -145091829 + AluSg SINE Alu 1 303 -7 229 292 323 0 chr6 44187789 44187885 -145091669 - MIR SINE MIR -133 129 3 7858 124 33 32 chr6 44188496 44189330 -145090224 + HSMAR2 DNA Mariner 13 845 -457 1686 150 37 17 chr6 44189330 44189624 -145089930 + AluJo SINE Alu 1 300 -12 7858 124 33 32 chr6 44189624 44189637 -145089917 + HSMAR2 DNA Mariner 845 856 -446 2266 103 0 10 chr6 44189637 44189938 -145089616 + AluSq SINE Alu 1 298 -15 7858 124 33 32 chr6 44189938 44190324 -145089230 + HSMAR2 DNA Mariner 856 1251 -51 2129 120 3 3 chr6 44190324 44190625 -145088929 - AluSx SINE Alu -11 301 1 7858 124 33 32 chr6 44190625 44190677 -145088877 + HSMAR2 DNA Mariner 1251 1301 -1 1909 158 10 0 chr6 44191991 44192294 -145087260 - AluJo SINE Alu -5 307 2 486 317 163 29 chr6 44192340 44192854 -145086700 - L2 LINE L2 -1022 2292 1710 1816 131 0 19 chr6 44194219 44194486 -145085068 - AluSg SINE Alu -48 262 1 1058 103 0 0 chr6 44194486 44194622 -145084932 - AluSq/x SINE Alu -177 136 1 270 136 0 0 chr6 44195391 44195435 -145084119 + (CA)n Simple_repeat Simple_repeat 2 45 0 279 228 158 30 chr6 44196386 44196487 -145083067 + L2 LINE L2 3199 3312 -1 1861 89 13 80 chr6 44197017 44197378 -145082176 - AluSx SINE Alu 0 341 1 39 0 0 0 chr6 44198351 44198390 -145081164 + AT_rich Low_complexity Low_complexity 1 39 0 2279 106 7 3 chr6 44198413 44198715 -145080839 - AluSx SINE Alu -9 303 1 1455 177 104 24 chr6 44199497 44199785 -145079769 + AluJo SINE Alu 1 311 -1 1983 138 23 7 chr6 44199842 44200147 -145079407 - AluSx SINE Alu -2 310 1 692 148 0 57 chr6 44200204 44200326 -145079228 - FLAM_C SINE Alu 0 143 29 1571 152 16 8 chr6 44200363 44200613 -145078941 + AluJo SINE Alu 50 301 -11 28 48 0 0 chr6 44201743 44201785 -145077769 + AT_rich Low_complexity Low_complexity 1 42 0 750 147 0 0 chr6 44201797 44201899 -145077655 - FLAM_C SINE Alu -40 103 2 1400 246 147 17 chr6 44201989 44202574 -145076980 - L1MC4a LINE L1 -1788 6020 5360 2252 89 3 13 chr6 44202576 44202879 -145076675 + AluSg SINE Alu 1 300 -10 1977 136 17 14 chr6 44204691 44204986 -145074568 + AluSx SINE Alu 2 297 -15 693 124 35 0 chr6 44204986 44205099 -145074455 + L1MB3 LINE L1 6063 6179 -4 228 67 0 0 chr6 44205102 44205132 -145074422 + (T)n Simple_repeat Simple_repeat 1 30 0 2135 116 0 3 chr6 44205148 44205442 -145074112 + AluSx SINE Alu 1 293 -19 306 269 71 43 chr6 44205460 44205601 -145073953 + MIR SINE MIR 62 206 -56 449 192 32 72 chr6 44205616 44205741 -145073813 - L2 LINE L2 -2 3311 3192 311 244 33 12 chr6 44205942 44206033 -145073521 - MIR3 SINE MIR -53 155 63 2353 83 13 0 chr6 44206242 44206544 -145073010 - AluSx SINE Alu -6 306 1 1698 164 13 20 chr6 44206641 44206946 -145072608 + AluJb SINE Alu 1 303 -9 627 239 95 14 chr6 44207829 44208051 -145071503 + L1MC4 LINE L1 7779 8018 -24 2724 39 0 0 chr6 44208467 44208778 -145070776 + AluY SINE Alu 1 311 0 1531 55 0 0 chr6 44208778 44208959 -145070595 + AluY SINE Alu 131 311 0 1472 163 54 11 chr6 44209003 44209280 -145070274 + L1MB2 LINE L1 5620 5908 -275 710 153 47 82 chr6 44209285 44209418 -145070136 + L1MB2 LINE L1 5997 6124 -47 1569 159 13 68 chr6 44209418 44209726 -145069828 + AluJb SINE Alu 1 291 -21 710 153 47 82 chr6 44209726 44209762 -145069792 + L1MB2 LINE L1 6124 6160 -11 1716 178 0 4 chr6 44209776 44210057 -145069497 + AluJo SINE Alu 14 293 -19 761 130 65 0 chr6 44210159 44210267 -145069287 - FLAM_C SINE Alu -28 115 1 694 178 7 53 chr6 44210275 44210427 -145069127 - L1MB7 LINE L1 -2 6182 6038 1433 226 119 5 chr6 44210429 44210850 -145068704 + MLT1D LTR MaLR 37 505 0 815 165 0 0 chr6 44210971 44211092 -145068462 - FLAM_A SINE Alu -11 122 2 1420 151 11 151 chr6 44211586 44211796 -145067758 - AluJo SINE Alu 0 302 159 1419 156 80 33 chr6 44211796 44212072 -145067482 + AluJo SINE Alu 1 289 -23 1420 151 11 151 chr6 44212072 44212211 -145067343 - AluJo SINE Alu -143 159 2 814 178 0 0 chr6 44212234 44212352 -145067202 - FLAM_C SINE Alu -15 118 1 21 0 0 0 chr6 44212571 44212592 -145066962 + AT_rich Low_complexity Low_complexity 1 21 0 2339 64 3 17 chr6 44212901 44213199 -145066355 + AluSp SINE Alu 1 294 -19 1913 244 108 23 chr6 44214025 44214753 -145064801 + L1MC4 LINE L1 7113 7902 -140 1041 221 27 16 chr6 44214770 44215028 -145064526 + L1MB7 LINE L1 5519 5779 -387 921 139 15 0 chr6 44215301 44215438 -145064116 - FRAM SINE Alu -14 162 24 2216 103 3 3 chr6 44215465 44215755 -145063799 - AluSq SINE Alu -10 303 14 1848 158 7 17 chr6 44215755 44216052 -145063502 - AluJb SINE Alu -18 294 1 1381 213 59 42 chr6 44216358 44216540 -145063014 + L1MB7 LINE L1 5759 5936 -248 2379 88 0 3 chr6 44216540 44216836 -145062718 - AluSq SINE Alu -18 295 1 1381 213 59 42 chr6 44216836 44217057 -145062497 + L1MB7 LINE L1 5936 6169 -15 348 265 34 0 chr6 44217064 44217181 -145062373 + L1MC4 LINE L1 7922 8042 0 2106 114 36 16 chr6 44217192 44217498 -145062056 + AluSx SINE Alu 1 312 0 1530 152 83 0 chr6 44217768 44218032 -145061522 + AluJb SINE Alu 21 306 -6 585 240 77 16 chr6 44218365 44218548 -145061006 + HAL1 LINE L1 92 285 -2222 1824 140 54 4 chr6 44218733 44219012 -145060542 - AluSx SINE Alu -19 293 1 846 120 16 16 chr6 44219057 44219182 -145060372 + FLAM_C SINE Alu 1 125 -8 1376 226 98 34 chr6 44219186 44219829 -145059725 + HAL1 LINE L1 822 1695 -812 796 254 130 30 chr6 44219832 44220202 -145059352 + HAL1 LINE L1 1744 2150 -357 1090 178 199 0 chr6 44220210 44220441 -145059113 + AluJb SINE Alu 11 287 -25 258 32 0 0 chr6 44220451 44220482 -145059072 + (CA)n Simple_repeat Simple_repeat 1 31 0 312 27 0 0 chr6 44220523 44220560 -145058994 + (CA)n Simple_repeat Simple_repeat 1 37 0 339 236 162 68 chr6 44220626 44220660 -145058894 - MIR SINE MIR -21 241 212 2383 79 3 0 chr6 44220660 44220950 -145058604 - AluSx SINE Alu -21 291 1 339 236 162 68 chr6 44220950 44221063 -145058491 - MIR SINE MIR -50 212 80 408 251 169 26 chr6 44221106 44221337 -145058217 + HAL1 LINE L1 2244 2507 0 747 152 7 43 chr6 44221402 44221540 -145058014 + AluJb SINE Alu 1 133 -179 2093 134 0 6 chr6 44221622 44221936 -145057618 + AluSx SINE Alu 1 312 0 282 243 97 20 chr6 44222355 44222605 -145056949 + L1ME LINE L1 5265 5535 -629 1469 181 44 4 chr6 44222751 44223022 -145056532 + AluJb SINE Alu 1 282 -30 329 82 33 0 chr6 44223050 44223111 -145056443 + (CTAG)n Simple_repeat Simple_repeat 2 64 0 1019 153 0 0 chr6 44223136 44223293 -145056261 - AluJb SINE Alu -22 290 134 477 223 36 0 chr6 44223489 44223601 -145055953 + L1ME LINE L1 5546 5661 -460 22 0 0 0 chr6 44223618 44223640 -145055914 + AT_rich Low_complexity Low_complexity 1 22 0 2102 139 0 0 chr6 44223648 44223942 -145055612 + AluSx SINE Alu 1 294 -18 1851 178 7 0 chr6 44224290 44224593 -145054961 + AluJb SINE Alu 1 305 -7 2245 87 10 10 chr6 44224666 44224964 -145054590 - AluSx SINE Alu -14 298 1 875 99 0 57 chr6 44224972 44225113 -145054441 - L1PA15 LINE L1 -1 6164 6032 2292 53 60 27 chr6 44225189 44225490 -145054064 + AluY SINE Alu 1 311 0 1130 90 36 36 chr6 44225619 44225785 -145053769 + L1PA15 LINE L1 6000 6165 0 649 246 122 67 chr6 44225795 44226255 -145053299 + L1ME4a LINE L1 5414 5898 -223 1844 201 73 18 chr6 44226265 44226704 -145052850 + MLT1C LTR MaLR 5 467 0 525 290 110 10 chr6 44226712 44226912 -145052642 + MIR SINE MIR 23 242 -20 301 272 26 0 chr6 44226971 44227085 -145052469 + L1ME4a LINE L1 5984 6100 -21 1912 106 95 0 chr6 44227089 44227362 -145052192 - AluSx SINE Alu -13 299 1 30 27 0 0 chr6 44227362 44227399 -145052155 + AT_rich Low_complexity Low_complexity 1 37 0 555 126 39 19 chr6 44227437 44227540 -145052014 - MER50 LTR ERV1 -131 603 499 23 54 0 0 chr6 44227550 44227587 -145051967 + AT_rich Low_complexity Low_complexity 1 37 0 25 65 0 0 chr6 44227672 44227718 -145051836 + AT_rich Low_complexity Low_complexity 1 46 0 868 128 7 28 chr6 44228107 44228248 -145051306 + FLAM_C SINE Alu 3 140 -3 2147 89 6 71 chr6 44228469 44228795 -145050759 - AluSg SINE Alu -5 305 1 1720 173 0 14 chr6 44228802 44228875 -145050679 - AluJo SINE Alu -26 286 214 2495 56 7 3 chr6 44228875 44229181 -145050373 - AluY SINE Alu -4 307 1 1720 173 0 14 chr6 44229181 44229396 -145050158 - AluJo SINE Alu -98 214 2 539 204 0 10 chr6 44229421 44229524 -145050030 + U13 snRNA snRNA 1 102 -2 727 207 0 0 chr6 44229554 44229670 -145049884 + AluJo SINE Alu 85 200 -112 313 279 0 0 chr6 44229745 44229831 -145049723 + L1MC4 LINE L1 6618 6703 -1339 1008 102 0 0 chr6 44230010 44230157 -145049397 + (TA)n Simple_repeat Simple_repeat 2 148 0 984 222 108 56 chr6 44230283 44230404 -145049150 + MER102b DNA MER1_type 1 114 -1314 1578 140 16 76 chr6 44230404 44230719 -145048835 + AluJo SINE Alu 1 296 -16 984 222 108 56 chr6 44230719 44230921 -145048633 + MER102b DNA MER1_type 114 341 0 226 260 41 41 chr6 44231119 44231192 -145048362 - L2 LINE L2 -3 3269 3197 23 0 0 0 chr6 44231933 44231956 -145047598 + AT_rich Low_complexity Low_complexity 1 23 0 2116 119 42 10 chr6 44231956 44232266 -145047288 - 7SLRNA srpRNA srpRNA 0 320 1 1499 173 25 85 chr6 44232484 44232842 -145046712 + L1M4 LINE L1 4945 5272 -874 2459 57 3 3 chr6 44232842 44233139 -145046415 + AluY SINE Alu 1 297 -14 1499 173 25 85 chr6 44233139 44233225 -145046329 + L1M4 LINE L1 5272 5362 -784 1803 32 55 0 chr6 44233310 44233527 -145046027 + AluY SINE Alu 1 229 -82 1939 190 18 87 chr6 44233862 44234037 -145045517 + L1MB5 LINE L1 5317 5502 -672 2143 108 3 10 chr6 44234037 44234332 -145045222 + AluSx SINE Alu 1 293 -19 191 61 30 0 chr6 44234332 44234365 -145045189 + (TA)n Simple_repeat Simple_repeat 2 35 0 1939 190 18 87 chr6 44234365 44234756 -145044798 + L1MB5 LINE L1 5501 5819 -355 1770 163 7 0 chr6 44234756 44235044 -145044510 + AluJb SINE Alu 11 300 -12 1939 190 18 87 chr6 44235044 44235110 -145044444 + L1MB5 LINE L1 5819 5888 -286 1994 124 0 0 chr6 44235154 44235419 -145044135 + AluSx SINE Alu 1 265 -47 931 112 0 0 chr6 44235476 44235601 -145043953 + AluSp/q SINE Alu 175 299 -14 1039 195 24 14 chr6 44235601 44235811 -145043743 + L1MB5 LINE L1 5931 6142 -32 960 195 18 12 chr6 44235811 44235975 -145043579 + FAM SINE Alu 1 165 -10 24 53 0 0 chr6 44235975 44236013 -145043541 + AT_rich Low_complexity Low_complexity 1 38 0 300 67 19 240 chr6 44236756 44236802 -145042752 + L1MB3 LINE L1 6101 6155 -28 2184 113 0 0 chr6 44236802 44237093 -145042461 + AluSx SINE Alu 1 291 -21 216 0 0 0 chr6 44237097 44237121 -145042433 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 300 67 19 240 chr6 44237121 44237173 -145042381 + L1MB3 LINE L1 6158 6181 -2 325 375 112 15 chr6 44237331 44237554 -145042000 + L3b LINE CR1 1279 1534 -49 2109 69 0 15 chr6 44237554 44237816 -145041738 - AluY SINE Alu -53 258 1 325 375 112 15 chr6 44237816 44237861 -145041693 + L3b LINE CR1 1534 1573 -10 2229 104 0 3 chr6 44238141 44238438 -145041116 + AluSx SINE Alu 1 296 -16 650 200 0 0 chr6 44238589 44238699 -145040855 - AluJ SINE Alu -9 303 194 291 260 27 14 chr6 44341897 44341970 -144937584 + L2 LINE L2 3198 3271 -1 416 313 0 4 chr6 44344987 44345113 -144934441 - MIR SINE MIR -62 146 33 247 319 11 33 chr6 44345141 44345232 -144934322 - L2 LINE L2 0 3272 3184 354 292 135 11 chr6 44345338 44345516 -144934038 - L2 LINE L2 -225 3047 2848 2128 106 14 3 chr6 44345543 44345836 -144933718 - AluSc SINE Alu -13 296 1 1365 227 95 0 chr6 44346129 44346504 -144933050 - L2 LINE L2 -317 2996 2598 575 312 77 5 chr6 44346659 44346880 -144932674 + MIR SINE MIR 13 249 -13 318 313 28 56 chr6 44346944 44347228 -144932326 - L2 LINE L2 -1005 2309 2034 289 258 225 20 chr6 44347270 44347421 -144932133 - MER5A DNA MER1_type -1 188 7 185 222 19 0 chr6 44347484 44347538 -144932016 + MIR SINE MIR 82 136 -72 586 255 25 13 chr6 44347969 44348126 -144931428 + MER5B DNA MER1_type 2 160 -18 841 122 0 0 chr6 44348560 44348675 -144930879 + FLAM_C SINE Alu 1 115 -18 1035 160 5 64 chr6 44348775 44348994 -144930560 - AluJ SINE Alu -103 209 4 283 295 107 9 chr6 44349002 44349114 -144930440 - L2 LINE L2 -11 3261 3139 439 301 37 15 chr6 44349122 44349258 -144930296 - MIR3 SINE MIR -54 154 16 710 225 104 99 chr6 44349444 44349483 -144930071 - MLT1J LTR MaLR -154 357 320 766 163 28 62 chr6 44349483 44349544 -144930010 + MER5B DNA MER1_type 3 65 -113 2252 88 0 0 chr6 44349544 44349838 -144929716 + AluSq SINE Alu 1 294 -19 766 163 28 62 chr6 44349838 44349954 -144929600 + MER5B DNA MER1_type 65 174 -4 710 225 104 99 chr6 44349954 44350269 -144929285 - MLT1J LTR MaLR -191 320 1 1613 164 38 3 chr6 44350958 44351251 -144928303 - AluSx SINE Alu -9 303 1 391 206 167 48 chr6 44352456 44352582 -144926972 - MIR SINE MIR -110 152 12 697 145 60 0 chr6 44352672 44352789 -144926765 - MER3 DNA MER1_type -81 128 5 723 243 78 14 chr6 44352794 44352898 -144926656 + MIR SINE MIR 40 136 -126 1699 146 17 20 chr6 44352898 44353192 -144926362 + AluJo SINE Alu 1 293 -19 723 243 78 14 chr6 44353192 44353295 -144926259 + MIR SINE MIR 136 259 -3 303 315 27 18 chr6 44353298 44353409 -144926145 - MIR3 SINE MIR -39 169 58 341 233 14 0 chr6 44353551 44353624 -144925930 + AluS SINE Alu 1 74 -229 337 224 144 24 chr6 44353702 44353827 -144925727 + L2 LINE L2 3174 3313 0 268 193 18 18 chr6 44353828 44353885 -144925669 - MIR SINE MIR -63 145 89 509 234 52 7 chr6 44354665 44354819 -144924735 - L1ME4a LINE L1 -1 6120 5960 1294 167 9 5 chr6 44355081 44355303 -144924251 - AluJo SINE Alu -5 307 85 797 127 0 0 chr6 44355314 44355424 -144924130 + FRAM SINE Alu 54 163 -13 233 200 0 0 chr6 44355424 44355464 -144924090 + MIR SINE MIR 153 192 -70 1404 234 50 8 chr6 44355486 44355849 -144923705 + LTR16C LTR ERVL 114 491 0 449 274 137 20 chr6 44355849 44356053 -144923501 - L2 LINE L2 -167 3146 2919 297 125 62 0 chr6 44356739 44356787 -144922767 - L2 LINE L2 0 3313 3263 317 177 97 0 chr6 44356892 44356954 -144922600 - MER63 DNA MER1_type -142 694 1 228 327 107 18 chr6 44357128 44357296 -144922258 - L2 LINE L2 -186 3086 2904 237 277 108 0 chr6 44358256 44358339 -144921215 - MIR SINE MIR -60 202 111 226 278 28 0 chr6 44358404 44358476 -144921078 - MIR SINE MIR -63 199 126 519 201 18 18 chr6 44358629 44358764 -144920790 + MIR SINE MIR 21 157 -62 345 274 20 0 chr6 44358767 44358869 -144920685 - MIR SINE MIR -1 261 158 2134 109 0 25 chr6 44358985 44359305 -144920249 + AluSx SINE Alu 1 312 0 416 312 62 47 chr6 44359719 44359995 -144919559 + L2 LINE L2 2853 3132 -140 941 256 29 20 chr6 44360031 44360277 -144919277 + MIR SINE MIR 15 262 0 902 230 24 28 chr6 44360401 44360649 -144918905 - LTR67 LTR ERVL 0 557 311 481 227 45 9 chr6 44360659 44360769 -144918785 - MER115 DNA AcHobo -7 686 573 1606 221 164 40 chr6 44360775 44361304 -144918250 - MLT1G1 LTR MaLR 0 595 1 2073 273 52 4 chr6 44361312 44361847 -144917707 - MER115 DNA AcHobo -131 562 2 298 270 40 0 chr6 44361849 44361923 -144917631 - LTR67 LTR ERVL -254 303 227 294 223 11 32 chr6 44362077 44362171 -144917383 - L1MEc LINE L1 -6270 126 35 1853 101 0 8 chr6 44362263 44362531 -144917023 - AluSq SINE Alu -9 304 39 534 338 67 12 chr6 44362578 44362818 -144916736 + MIR SINE MIR 7 259 -3 501 129 35 0 chr6 44363400 44363485 -144916069 - L1MA6 LINE L1 -66 6234 6147 1961 66 17 7 chr6 44363531 44363805 -144915749 + THE1C LTR MaLR 1 375 0 329 263 74 0 chr6 44369153 44369248 -144910306 - MIR3 SINE MIR -22 186 85 442 292 101 18 chr6 44369309 44369477 -144910077 - MIR3 SINE MIR -21 187 6 2491 50 0 0 chr6 44369764 44370066 -144909488 + AluY SINE Alu 1 302 -9 556 243 42 99 chr6 44370406 44370669 -144908885 + LTR16C LTR ERVL 237 484 -7 865 216 17 6 chr6 44370776 44370952 -144908602 + MER69 DNA AcHobo 4 181 -2345 3601 185 48 57 chr6 44371006 44372067 -144907487 + MER69 DNA AcHobo 1452 2503 -23 530 249 68 30 chr6 44372486 44372723 -144906831 - MER112 DNA MER1_type -6 254 9 2055 128 0 7 chr6 44372750 44373055 -144906499 + AluSx SINE Alu 1 303 -9 208 148 33 16 chr6 44373353 44373414 -144906140 + (ATATG)n Simple_repeat Simple_repeat 3 64 0 474 299 0 104 chr6 44374164 44374308 -144905246 - MIR SINE MIR -13 249 146 2091 190 23 58 chr6 44374308 44374828 -144904726 - MLT1D LTR MaLR -3 502 1 474 299 0 104 chr6 44374828 44374961 -144904593 - MIR SINE MIR -116 146 1 284 353 60 0 chr6 44375003 44375119 -144904435 - L2 LINE L2 -10 3262 3140 185 370 44 22 chr6 44375214 44375349 -144904205 - L2 LINE L2 -147 3125 2988 456 255 19 62 chr6 44375777 44375938 -144903616 - L2 LINE L2 0 3313 3160 27 0 0 0 chr6 44376453 44376480 -144903074 + AT_rich Low_complexity Low_complexity 1 27 0 455 327 75 16 chr6 44376557 44376920 -144902634 - L2 LINE L2 -218 3054 2661 9007 123 37 11 chr6 44377161 44378579 -144900975 + Tigger1 DNA MER2_type 963 2417 -1 1249 191 30 111 chr6 44379847 44380244 -144899310 + MLT1A1 LTR MaLR 1 365 0 645 187 278 75 chr6 44381488 44381654 -144897900 + LTR16A1 LTR ERVL 5 136 -321 315 0 0 0 chr6 44381654 44381689 -144897865 + (CA)n Simple_repeat Simple_repeat 2 36 0 645 187 278 75 chr6 44381689 44381896 -144897658 + LTR16A1 LTR ERVL 136 454 -3 576 0 0 0 chr6 44381896 44381960 -144897594 + (CA)n Simple_repeat Simple_repeat 2 65 0 3968 182 12 25 chr6 44382419 44383119 -144896435 + MER49 LTR ERV1 180 871 -52 2237 83 0 43 chr6 44383119 44383443 -144896111 + AluSg SINE Alu 1 310 0 3968 182 12 25 chr6 44383443 44383496 -144896058 + MER49 LTR ERV1 871 923 0 298 164 73 0 chr6 44383705 44383760 -144895794 + L2 LINE L2 3214 3272 0 265 272 26 53 chr6 44383980 44384094 -144895460 + MIR SINE MIR 110 220 -42 510 244 50 8 chr6 44384390 44384509 -144895045 + MIR3 SINE MIR 83 206 -2 1962 146 7 0 chr6 44385024 44385318 -144894236 + AluJo SINE Alu 1 296 -16 1288 237 27 145 chr6 44385366 44385891 -144893663 + L1ME3 LINE L1 5550 5975 -189 2239 104 0 0 chr6 44385891 44386199 -144893355 - AluSg SINE Alu -2 308 1 1288 237 27 145 chr6 44386199 44386370 -144893184 + L1ME3 LINE L1 5975 6164 0 332 266 87 43 chr6 44386849 44387056 -144892498 - L2 LINE L2 -38 3275 3060 704 234 84 66 chr6 44387061 44387288 -144892266 + MIR SINE MIR 20 250 -12 579 186 224 39 chr6 44387648 44387804 -144891750 + MIR SINE MIR 78 262 0 290 309 40 8 chr6 44387983 44388114 -144891440 - MIR3 SINE MIR -72 136 14 464 200 81 75 chr6 44388350 44388510 -144891044 - MER103 DNA DNA -2 164 4 1832 140 3 3 chr6 44389048 44389333 -144890221 + AluJb SINE Alu 17 301 -11 1508 142 68 21 chr6 44389342 44389623 -144889931 + AluJo SINE Alu 1 294 -18 486 265 108 0 chr6 44390151 44390317 -144889237 - MIR SINE MIR -3 259 76 216 329 14 0 chr6 44391185 44391255 -144888299 - L2 LINE L2 -16 3256 3186 2134 119 0 3 chr6 44391947 44392258 -144887296 + AluSx SINE Alu 2 311 -1 647 241 5 94 chr6 44392392 44392604 -144886950 + MIR SINE MIR 64 256 -6 225 228 37 79 chr6 44393103 44393187 -144886367 + MIR SINE MIR 72 151 -65 286 292 100 25 chr6 44393795 44393915 -144885639 - MIR SINE MIR -63 145 17 241 344 49 41 chr6 44394497 44394619 -144884935 + MER5B DNA MER1_type 19 141 -37 867 246 42 9 chr6 44394625 44394840 -144884714 - L1ME3 LINE L1 0 6162 5941 323 280 51 4 chr6 44394895 44395015 -144884539 - MIR SINE MIR -62 146 35 1977 146 0 0 chr6 44395117 44395412 -144884142 + AluJb SINE Alu 1 295 -17 2252 106 0 0 chr6 44395416 44395719 -144883835 + AluSc SINE Alu 3 305 -4 349 68 0 0 chr6 44397589 44397633 -144881921 - LTR23 LTR ERV1 -74 363 320 755 216 99 14 chr6 44398383 44398589 -144880965 + MIR SINE MIR 19 234 -28 487 227 108 62 chr6 44399275 44399451 -144880103 - L2 LINE L2 0 3313 3130 228 281 6 79 chr6 44399572 44399736 -144879818 - ORSL DNA AcHobo 0 275 124 1542 221 105 20 chr6 44399946 44400384 -144879170 - MLT1J LTR MaLR -31 480 6 844 235 146 13 chr6 44400637 44400939 -144878615 - L2 LINE L2 -535 2779 2438 439 353 23 23 chr6 44401653 44401914 -144877640 - L1ME3 LINE L1 -304 5817 5557 2230 100 3 6 chr6 44402239 44402550 -144877004 - AluSx SINE Alu -2 310 1 1917 215 23 0 chr6 44402552 44402984 -144876570 + Charlie4a DNA MER1_type 67 508 0 383 291 35 0 chr6 44403616 44403757 -144875797 + (GGGTG)n Simple_repeat Simple_repeat 3 148 0 2156 118 3 0 chr6 44404231 44404537 -144875017 + AluSq SINE Alu 1 307 -6 200 285 244 8 chr6 44404608 44404731 -144874823 - MIR SINE MIR -34 228 77 252 330 132 0 chr6 44404904 44405010 -144874544 - L2 LINE L2 -26 3287 3168 394 195 124 44 chr6 44405368 44405481 -144874073 + L1ME1 LINE L1 6037 6158 -6 230 191 0 0 chr6 44406655 44406697 -144872857 + MIR SINE MIR 103 144 -118 411 275 192 0 chr6 44406765 44406932 -144872622 - MIR SINE MIR -62 200 2 471 78 0 0 chr6 44407200 44407264 -144872290 + (TA)n Simple_repeat Simple_repeat 2 65 0 204 121 30 0 chr6 44407463 44407496 -144872058 + GA-rich Low_complexity Low_complexity 2 35 0 253 174 22 0 chr6 44407883 44407929 -144871625 + L2 LINE L2 3192 3238 -75 1085 257 134 21 chr6 44407930 44408537 -144871017 - L2 LINE L2 0 3313 2657 338 257 0 0 chr6 44408537 44408611 -144870943 + L2 LINE L2 3195 3268 -4 285 350 0 42 chr6 44408733 44408853 -144870701 - MIR SINE MIR -42 220 106 280 277 71 85 chr6 44409373 44409514 -144870040 - L2 LINE L2 -1 3271 3133 386 198 0 12 chr6 44409729 44409810 -144869744 - AluJ/FRAM SINE Alu 0 302 223 975 223 64 5 chr6 44410072 44410292 -144869262 - MIR SINE MIR -28 234 2 203 260 0 104 chr6 44411885 44411981 -144867573 - L3 LINE CR1 -56 1521 1436 238 308 23 19 chr6 44412061 44412256 -144867298 + CT-rich Low_complexity Low_complexity 1 195 0 216 346 6 34 chr6 44412302 44412481 -144867073 + CT-rich Low_complexity Low_complexity 1 174 0 768 219 110 26 chr6 44413127 44413355 -144866199 + MIR SINE MIR 16 262 0 204 250 13 79 chr6 44413354 44413430 -144866124 - MIR SINE MIR -74 188 118 * 497 240 53 20 chr6 44414618 44414768 -144864786 + MLT1G LTR MaLR 428 582 -8 394 253 40 0 chr6 44415380 44415479 -144864075 + MER99 DNA DNA 1 103 -725 1690 162 18 0 chr6 44415507 44415820 -144863734 - AluSx SINE Alu 0 318 1 1435 212 14 3 chr6 44415871 44416177 -144863377 + AluJo SINE Alu 1 309 0 24 0 0 0 chr6 44416465 44416489 -144863065 + AT_rich Low_complexity Low_complexity 1 24 0 1708 168 3 0 chr6 44416509 44416807 -144862747 - AluJb SINE Alu -13 299 1 1102 146 0 0 chr6 44416867 44417038 -144862516 - FRAM SINE Alu -8 168 1 3022 178 22 11 chr6 44417359 44417903 -144861651 + MER99 DNA DNA 214 763 -65 222 326 108 8 chr6 44418132 44418261 -144861293 + L2 LINE L2 2124 2265 -1049 357 133 17 0 chr6 44418442 44418502 -144861052 + MLT1F1 LTR MaLR 507 567 0 876 254 50 42 chr6 44419131 44419206 -144860348 - L1MEd LINE L1 -4863 1256 1183 1454 151 93 31 chr6 44419206 44419497 -144860057 - AluJo SINE Alu -3 309 1 876 254 50 42 chr6 44419497 44419779 -144859775 - L1MEd LINE L1 -4936 1183 896 23 0 0 0 chr6 44419847 44419870 -144859684 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 44419961 44419986 -144859568 + AT_rich Low_complexity Low_complexity 1 25 0 326 296 139 9 chr6 44420620 44420735 -144858819 + L2 LINE L2 3179 3308 -5 494 323 62 55 chr6 44420751 44421054 -144858500 - L2 LINE L2 -341 2973 2665 1802 138 3 26 chr6 44421054 44421359 -144858195 + AluJb SINE Alu 1 298 -14 494 323 62 55 chr6 44421359 44421473 -144858081 - L2 LINE L2 -649 2665 2553 1328 165 6 92 chr6 44421516 44421832 -144857722 + AluJo SINE Alu 10 298 -14 201 365 52 0 chr6 44421852 44421948 -144857606 - L2 LINE L2 -817 2497 2397 423 206 9 37 chr6 44423475 44423582 -144855972 - L1ME1 LINE L1 -3 6232 6129 2083 136 3 0 chr6 44423855 44424164 -144855390 - AluSq SINE Alu -1 312 3 22 0 0 0 chr6 44425143 44425165 -144854389 + AT_rich Low_complexity Low_complexity 1 22 0 297 337 129 25 chr6 44426003 44426166 -144853388 - MER5A DNA MER1_type -3 186 7 23 0 0 0 chr6 44426265 44426288 -144853266 + AT_rich Low_complexity Low_complexity 1 23 0 345 314 68 40 chr6 44426527 44426775 -144852779 + L3 LINE CR1 1171 1425 -152 756 248 0 34 chr6 44427663 44427869 -144851685 + L2 LINE L2 3100 3298 -15 509 258 48 0 chr6 44428517 44428641 -144850913 + MIR SINE MIR 1 130 -132 1065 93 214 6 chr6 44429237 44429419 -144850135 - MER30 DNA MER1_type 0 230 11 2256 102 39 36 chr6 44429507 44429870 -144849684 + THE1B LTR MaLR 1 364 0 2126 115 3 3 chr6 44430746 44431058 -144848496 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 44431078 44431100 -144848454 + AT_rich Low_complexity Low_complexity 1 22 0 260 380 91 0 chr6 44431804 44431925 -144847629 - L2 LINE L2 0 3313 3182 227 357 169 22 chr6 44433904 44434495 -144845059 + L2 LINE L2 1726 2403 -911 2016 83 0 67 chr6 44435273 44435573 -144843981 + AluSg SINE Alu 1 280 -30 286 294 161 7 chr6 44435608 44435751 -144843803 - HAL1 LINE L1 -1901 606 442 22 0 0 0 chr6 44435814 44435836 -144843718 + AT_rich Low_complexity Low_complexity 1 22 0 2114 160 6 6 chr6 44435858 44436202 -144843352 + MER2 DNA MER2_type 1 344 0 2457 50 3 0 chr6 44436466 44436766 -144842788 - AluY SINE Alu -10 301 1 772 283 92 36 chr6 44436767 44437772 -144841782 - L1ME1 LINE L1 -221 6018 4929 234 273 26 0 chr6 44437821 44437898 -144841656 + HAL1 LINE L1 1731 1809 -698 385 327 124 56 chr6 44437899 44438595 -144840959 + L1M4 LINE L1 1858 4948 -466 698 258 109 122 chr6 44438595 44438673 -144840881 - L1ME1 LINE L1 -5355 1041 963 180 0 0 0 chr6 44438673 44438693 -144840861 + (TATG)n Simple_repeat Simple_repeat 1 20 0 698 258 109 122 chr6 44438693 44438713 -144840841 - L1ME1 LINE L1 -5433 963 944 1638 159 7 34 chr6 44438713 44439009 -144840545 + AluJb SINE Alu 1 288 -24 698 258 109 122 chr6 44439009 44439875 -144839679 - L1ME1 LINE L1 -5452 944 89 820 188 41 56 chr6 44440068 44440265 -144839289 + MER20 DNA MER1_type 25 218 -1 1234 214 55 29 chr6 44440533 44440842 -144838712 - MER21B LTR ERV1 -60 803 487 373 186 119 147 chr6 44440859 44441036 -144838518 - MER21B LTR ERV1 -691 172 1 2382 74 3 13 chr6 44441435 44441747 -144837807 - AluY SINE Alu -2 309 1 2001 145 167 16 chr6 44441749 44442121 -144837433 - MSTA LTR MaLR 0 428 1 260 291 81 20 chr6 44442359 44442507 -144837047 - MIR3 SINE MIR -5 203 47 21 57 0 0 chr6 44444109 44444144 -144835410 + AT_rich Low_complexity Low_complexity 1 35 0 294 29 0 0 chr6 44444265 44444300 -144835254 + (CA)n Simple_repeat Simple_repeat 1 35 0 630 316 78 19 chr6 44444410 44444926 -144834628 - L1ME LINE L1 -360 5802 5257 22 70 0 0 chr6 44444968 44445011 -144834543 + AT_rich Low_complexity Low_complexity 1 43 0 660 243 0 0 chr6 44445020 44445156 -144834398 - FLAM_C SINE Alu -6 137 2 226 140 0 0 chr6 44445164 44445214 -144834340 - LTR66 LTR ERVL -166 444 395 230 245 0 43 chr6 44445237 44445331 -144834223 - L1MC4 LINE L1 -1339 6703 6614 * 242 289 0 0 chr6 44445257 44445347 -144834207 + L1MC4 LINE L1 6614 6703 -1339 189 171 0 0 chr6 44445347 44445382 -144834172 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 252 275 12 0 chr6 44445402 44445482 -144834072 + (TA)n Simple_repeat Simple_repeat 1 81 0 287 283 143 39 chr6 44445493 44445801 -144833753 - L1ME LINE L1 -1015 5131 4792 24 67 0 0 chr6 44445904 44445949 -144833605 + AT_rich Low_complexity Low_complexity 1 45 0 257 204 10 107 chr6 44446905 44447008 -144832546 - MER94 DNA DNA -39 95 3 205 355 29 58 chr6 44447326 44447464 -144832090 - L2 LINE L2 -5 3267 3134 22 35 0 0 chr6 44447980 44448009 -144831545 + AT_rich Low_complexity Low_complexity 1 29 0 838 166 7 7 chr6 44448544 44448683 -144830871 - AluSx SINE Alu -153 159 21 2479 61 0 0 chr6 44448825 44449120 -144830434 + AluY SINE Alu 1 295 -16 2540 78 0 0 chr6 44450135 44450442 -144829112 - AluSx SINE Alu -5 307 1 207 299 75 28 chr6 44450643 44450750 -144828804 + MIR SINE MIR 151 262 0 22 70 0 0 chr6 44450809 44450852 -144828702 + AT_rich Low_complexity Low_complexity 1 43 0 727 222 81 36 chr6 44451253 44451653 -144827901 - LTR16A1 LTR ERVL 0 457 8 1132 201 34 0 chr6 44452754 44452963 -144826591 - MER20 DNA MER1_type -3 216 1 263 335 190 0 chr6 44453012 44453170 -144826384 - MIR SINE MIR -48 214 27 * 493 222 75 71 chr6 44453156 44453368 -144826186 + MIR SINE MIR 29 241 -21 2493 60 0 25 chr6 44456629 44456944 -144822610 - AluY SINE Alu -4 307 1 540 205 83 51 chr6 44457736 44457892 -144821662 + MIR SINE MIR 87 247 -15 217 299 153 29 chr6 44458006 44458143 -144821411 - MIR3 SINE MIR -11 197 44 22 35 0 0 chr6 44459565 44459594 -144819960 + AT_rich Low_complexity Low_complexity 1 29 0 808 279 95 9 chr6 44461543 44461880 -144817674 + L2 LINE L2 2224 2589 -725 530 229 8 8 chr6 44461890 44462012 -144817542 + L2 LINE L2 3192 3313 0 339 294 124 26 chr6 44462142 44462260 -144817294 - MIR SINE MIR 0 262 157 2273 122 0 0 chr6 44462260 44462572 -144816982 + AluSx SINE Alu 1 312 0 339 294 124 26 chr6 44462572 44462647 -144816907 - MIR SINE MIR -105 157 50 241 231 0 0 chr6 44462869 44462916 -144816638 + T-rich Low_complexity Low_complexity 1 50 -15 3113 21 0 0 chr6 44462916 44463249 -144816305 - SVA Other Other 0 1386 1054 241 231 0 0 chr6 44463249 44463266 -144816288 + T-rich Low_complexity Low_complexity 49 65 0 323 309 146 0 chr6 44465856 44465966 -144813588 - MER91A DNA MER1_type -70 126 1 189 0 0 0 chr6 44467903 44467924 -144811630 + (T)n Simple_repeat Simple_repeat 1 21 0 1928 139 0 33 chr6 44469095 44469397 -144810157 - AluJb SINE Alu -20 292 1 2111 165 40 3 chr6 44469860 44470212 -144809342 - MER47A DNA MER2_type -1 365 1 434 202 176 0 chr6 44470228 44470347 -144809207 - L2 LINE L2 -5 3308 3169 238 315 34 0 chr6 44471958 44472047 -144807507 + MIR3 SINE MIR 108 199 -9 209 81 0 27 chr6 44472646 44472683 -144806871 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1903 109 53 0 chr6 44472683 44472949 -144806605 - AluJb SINE Alu -32 280 1 2299 106 0 0 chr6 44473563 44473865 -144805689 + AluSq SINE Alu 1 302 -11 346 304 121 29 chr6 44475548 44475755 -144803799 - MIR SINE MIR 0 262 37 2287 86 7 0 chr6 44477521 44477823 -144801731 + AluSq SINE Alu 1 304 -9 354 167 13 103 chr6 44577947 44578025 -144701529 - AluJ/FLAM SINE Alu -244 58 1 284 274 0 0 chr6 44578570 44578643 -144700911 - MIR SINE MIR -66 196 124 2318 81 0 3 chr6 44578669 44578978 -144700576 + AluY SINE Alu 1 308 -3 1799 130 51 0 chr6 44579293 44579586 -144699968 - AluSg SINE Alu -1 309 2 1426 171 3 72 chr6 44579747 44579899 -144699655 + AluSq SINE Alu 3 125 -188 1996 126 0 23 chr6 44579899 44580209 -144699345 + AluSx SINE Alu 1 303 -9 1426 171 3 72 chr6 44580209 44580361 -144699193 + AluSq SINE Alu 125 286 -27 189 94 0 0 chr6 44580361 44580393 -144699161 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1565 77 39 0 chr6 44580455 44580662 -144698892 - AluSc SINE Alu -94 215 1 1588 164 38 0 chr6 44581549 44581669 -144697885 + AluJb SINE Alu 1 115 -197 249 57 0 0 chr6 44581669 44581704 -144697850 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1588 164 38 0 chr6 44581704 44581876 -144697678 + AluJb SINE Alu 115 304 -8 389 230 146 30 chr6 44581877 44582042 -144697512 - MIR SINE MIR -2 260 77 492 232 179 41 chr6 44582042 44582081 -144697473 + MLT1J2 LTR MaLR 1 33 -413 2129 101 0 7 chr6 44582081 44582392 -144697162 - AluSq SINE Alu 0 309 1 492 232 179 41 chr6 44582392 44582651 -144696903 + MLT1J2 LTR MaLR 33 327 -119 1432 132 9 0 chr6 44582666 44582879 -144696675 + AluJb SINE Alu 85 299 -13 428 218 3 24 chr6 44582890 44583003 -144696551 + MLT1I LTR MaLR 319 409 0 389 310 38 39 chr6 44583096 44583292 -144696262 + MIR SINE MIR 25 216 -46 273 231 380 0 chr6 44583444 44583565 -144695989 - L1MC4 LINE L1 -5 8037 7871 2069 113 3 0 chr6 44583567 44583859 -144695695 + AluSq SINE Alu 1 293 -20 793 244 0 0 chr6 44583891 44584047 -144695507 + MLT1D LTR MaLR 350 505 0 1761 216 146 35 chr6 44584049 44584235 -144695319 - L1MC4 LINE L1 -309 7733 7569 1191 187 0 136 chr6 44584235 44584567 -144694987 + AluY SINE Alu 1 287 -14 1761 216 146 35 chr6 44584567 44584864 -144694690 - L1MC4 LINE L1 -473 7569 7306 1957 115 34 3 chr6 44584864 44585159 -144694395 - AluSx SINE Alu -8 304 1 1761 216 146 35 chr6 44585159 44585333 -144694221 - L1MC4 LINE L1 -736 7306 7002 2029 98 3 14 chr6 44585333 44585646 -144693908 - AluSc SINE Alu 0 310 1 1211 214 3 50 chr6 44585649 44585952 -144693602 - AluJo SINE Alu -17 295 7 2114 91 3 58 chr6 44585962 44586292 -144693262 - AluSx SINE Alu 0 312 1 1841 222 113 7 chr6 44586296 44586738 -144692816 - L1MC4a LINE L1 -880 6928 6440 359 83 0 0 chr6 44586830 44586878 -144692676 + MER41D LTR ERV1 1 48 -509 379 71 36 0 chr6 44586878 44586934 -144692620 + L1PA3 LINE L1 6095 6152 -3 2054 82 11 0 chr6 44586967 44587262 -144692292 + AluSg SINE Alu 11 308 0 2209 86 3 3 chr6 44587262 44587566 -144691988 + AluSq SINE Alu 1 304 -9 888 152 8 0 chr6 44587571 44587703 -144691851 + FLAM_C SINE Alu 1 133 0 3484 174 22 13 chr6 44587722 44588348 -144691206 + LTR27 LTR ERV1 2 633 -3 2070 115 0 3 chr6 44588349 44588645 -144690909 + AluSx SINE Alu 1 295 -17 864 201 0 0 chr6 44588654 44588808 -144690746 + AluJb SINE Alu 145 298 -14 2246 92 13 0 chr6 44588814 44589120 -144690434 + AluSq SINE Alu 2 311 -2 609 244 45 0 chr6 44589133 44589289 -144690265 + MER41D LTR ERV1 395 557 0 1535 184 13 26 chr6 44589289 44589599 -144689955 - AluJo SINE Alu -1 311 6 1975 106 0 45 chr6 44589606 44589780 -144689774 - AluSq SINE Alu -15 298 143 2253 87 0 3 chr6 44589780 44590078 -144689476 - AluSg SINE Alu -13 297 1 1975 106 0 45 chr6 44590078 44590215 -144689339 - AluSq SINE Alu -170 143 1 439 259 0 67 chr6 44590219 44590354 -144689200 - L1ME2 LINE L1 -37 6127 6002 1994 95 20 14 chr6 44590397 44590692 -144688862 - AluSx SINE Alu -15 297 1 448 200 58 26 chr6 44590694 44590849 -144688705 - L1M3 LINE L1 -689 5491 5332 779 160 0 33 chr6 44590849 44591113 -144688441 - AluJb SINE Alu -1 311 2 415 160 235 71 chr6 44591113 44591351 -144688203 - L1M3 LINE L1 -804 5342 5066 2181 112 0 0 chr6 44591872 44592176 -144687378 - AluSx SINE Alu -8 304 1 1348 146 0 107 chr6 44592418 44592618 -144686936 - AluJo SINE Alu -10 302 145 1726 172 10 3 chr6 44592618 44592914 -144686640 + AluSx SINE Alu 1 298 -14 1348 146 0 107 chr6 44592914 44593021 -144686533 - AluJo SINE Alu -167 145 28 21 0 0 0 chr6 44593040 44593061 -144686493 + AT_rich Low_complexity Low_complexity 1 21 0 1792 271 64 17 chr6 44593064 44593703 -144685851 - L1MC4a LINE L1 -1876 5932 5264 2407 70 0 0 chr6 44593732 44594033 -144685521 + AluY SINE Alu 1 301 -10 2180 94 7 0 chr6 44594047 44594346 -144685208 + AluSp SINE Alu 1 301 -12 487 125 33 150 chr6 44594346 44594428 -144685126 + HY1 scRNA scRNA 1 66 -46 774 154 31 15 chr6 44594428 44594558 -144684996 - FLAM_C SINE Alu 0 133 2 487 125 33 150 chr6 44594558 44594595 -144684959 + HY1 scRNA scRNA 66 106 -6 856 151 0 108 chr6 44594641 44594667 -144684887 + AluJo SINE Alu 122 149 -163 1729 151 3 22 chr6 44594667 44594984 -144684570 + AluJo SINE Alu 1 311 -1 856 151 0 108 chr6 44594984 44595142 -144684412 + AluJo SINE Alu 149 286 -26 829 129 23 23 chr6 44595814 44595946 -144683608 + FLAM_C SINE Alu 2 133 0 383 307 190 0 chr6 44596151 44596356 -144683198 + MIR SINE MIR 13 256 -6 183 139 0 0 chr6 44596420 44596456 -144683098 + (TG)n Simple_repeat Simple_repeat 2 37 0 1647 163 30 3 chr6 44596636 44596931 -144682623 + AluJb SINE Alu 1 303 -9 1054 231 4 48 chr6 44597994 44598052 -144681502 - MIR SINE MIR 0 262 203 2389 75 0 0 chr6 44598052 44598358 -144681196 - AluY SINE Alu -5 306 1 1054 231 4 48 chr6 44598358 44598567 -144680987 - MIR SINE MIR -59 203 7 259 381 108 7 chr6 44598611 44598750 -144680804 + L2 LINE L2 3114 3266 -6 391 272 59 64 chr6 44599206 44599408 -144680146 + MLT1K LTR MaLR 378 578 -10 563 277 71 92 chr6 44599447 44599815 -144679739 + L1MC4a LINE L1 4688 5047 -1099 1585 173 11 18 chr6 44599817 44600100 -144679454 + AluJo SINE Alu 1 281 -31 239 79 26 0 chr6 44600145 44600183 -144679371 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 439 334 64 42 chr6 44600183 44600206 -144679348 + L1MC4a LINE L1 5023 5044 -1102 2182 116 0 0 chr6 44600206 44600508 -144679046 - AluSx SINE Alu -10 302 1 439 334 64 42 chr6 44600508 44600777 -144678777 + L1MC4a LINE L1 5044 5327 -819 2188 109 0 6 chr6 44600777 44601090 -144678464 + AluY SINE Alu 1 311 0 439 334 64 42 chr6 44601090 44601155 -144678399 + L1MC4a LINE L1 5327 5389 -757 1709 138 0 4 chr6 44601166 44601426 -144678128 + AluSx SINE Alu 27 285 -27 253 81 0 54 chr6 44601426 44601463 -144678091 + Alu SINE Alu 251 285 -17 277 136 0 0 chr6 44601463 44601507 -144678047 + Alu SINE Alu 249 292 -8 1333 165 0 0 chr6 44601537 44601749 -144677805 - AluJb SINE Alu -14 298 87 249 196 27 98 chr6 44601754 44601822 -144677732 + L1MC4a LINE L1 5367 5426 -2382 1853 123 28 3 chr6 44601822 44602107 -144677447 + AluSx SINE Alu 1 292 -20 249 196 27 98 chr6 44602107 44602150 -144677404 + L1MC4a LINE L1 5426 5470 -2338 675 254 70 60 chr6 44602162 44602251 -144677303 + L1MC4a LINE L1 5555 5642 -2166 2060 110 3 52 chr6 44602251 44602579 -144676975 - AluSx SINE Alu 0 312 1 2087 126 0 0 chr6 44602583 44602892 -144676662 - AluSx SINE Alu -3 309 1 675 254 70 60 chr6 44602892 44603096 -144676458 + L1MC4a LINE L1 5644 5856 -1952 2171 115 0 0 chr6 44603132 44603436 -144676118 + AluSx SINE Alu 1 304 -8 2314 90 3 0 chr6 44603438 44603748 -144675806 + AluY SINE Alu 1 311 0 189 107 0 0 chr6 44604172 44604200 -144675354 + (TA)n Simple_repeat Simple_repeat 2 29 0 667 229 82 69 chr6 44604200 44604251 -144675303 - LTR33A LTR ERVL -7 516 467 2532 36 0 3 chr6 44604251 44604554 -144675000 + AluY SINE Alu 1 302 -9 667 229 82 69 chr6 44604554 44604747 -144674807 - LTR33A LTR ERVL -56 467 269 2120 107 0 7 chr6 44604966 44605265 -144674289 - AluSc SINE Alu -12 297 1 936 178 0 25 chr6 44605265 44605428 -144674126 - FRAM SINE Alu -7 159 1 2031 131 0 6 chr6 44605544 44605858 -144673696 + AluSx SINE Alu 1 312 0 329 296 184 28 chr6 44605952 44606191 -144673363 - L1MC4 LINE L1 -328 7714 7333 27 0 0 0 chr6 44606199 44606226 -144673328 + AT_rich Low_complexity Low_complexity 1 27 0 1262 164 95 8 chr6 44606280 44606542 -144673012 + AluJb SINE Alu 16 300 -12 367 224 224 15 chr6 44606700 44606834 -144672720 + MIR SINE MIR 101 262 0 2317 68 0 10 chr6 44607150 44607461 -144672093 + AluY SINE Alu 2 309 -2 551 270 0 61 chr6 44607529 44607569 -144671985 + L2 LINE L2 3130 3171 -142 1551 152 7 56 chr6 44607569 44607725 -144671829 - AluJb SINE Alu -13 289 154 2259 70 0 0 chr6 44607725 44608024 -144671530 - AluSx SINE Alu -13 299 1 1551 152 7 56 chr6 44608024 44608170 -144671384 - AluJb SINE Alu -148 154 2 551 270 0 61 chr6 44608170 44608325 -144671229 + L2 LINE L2 3171 3313 0 588 213 87 0 chr6 44609180 44609307 -144670247 + AluJb SINE Alu 136 273 -39 2218 82 3 0 chr6 44609360 44609654 -144669900 - AluSp SINE Alu -18 295 1 3215 163 71 122 chr6 44609672 44609822 -144669732 - Charlie1a DNA MER1_type -1867 894 738 2053 30 45 22 chr6 44609822 44610089 -144669465 + AluY SINE Alu 39 311 0 3215 163 71 122 chr6 44610089 44610350 -144669204 - Charlie1a DNA MER1_type -2023 738 465 561 157 0 0 chr6 44610350 44610433 -144669121 + AluJ/FLAM SINE Alu 2 84 -228 3215 163 71 122 chr6 44610433 44610878 -144668676 - Charlie1a DNA MER1_type -2296 465 3 1351 153 141 0 chr6 44611151 44611413 -144668141 - AluSg SINE Alu -11 299 1 2040 112 10 19 chr6 44611806 44612118 -144667436 + AluSg SINE Alu 1 309 -1 2056 121 7 0 chr6 44612180 44612477 -144667077 - AluSx SINE Alu -13 299 1 2137 85 37 0 chr6 44612553 44612848 -144666706 - AluY SINE Alu -5 306 1 757 212 0 0 chr6 44612856 44612993 -144666561 - FRAM SINE Alu -16 160 24 372 231 75 106 chr6 44612996 44613060 -144666494 - MER58A DNA MER1_type -186 155 91 1646 179 0 7 chr6 44613060 44613356 -144666198 + AluJb SINE Alu 2 295 -17 372 231 75 106 chr6 44613356 44613451 -144666103 - MER58A DNA MER1_type -250 91 1 2063 113 10 0 chr6 44614439 44614739 -144664815 + AluSx SINE Alu 1 303 -9 2053 76 25 0 chr6 44614743 44615052 -144664502 - AluSx SINE Alu 0 316 1 27 29 0 0 chr6 44615052 44615086 -144664468 + AT_rich Low_complexity Low_complexity 1 34 0 1914 112 0 53 chr6 44615097 44615235 -144664319 + AluSx SINE Alu 3 118 -194 2357 71 13 0 chr6 44615235 44615543 -144664011 + AluSp SINE Alu 1 312 -1 1914 112 0 53 chr6 44615543 44615707 -144663847 + AluSx SINE Alu 118 289 -23 26 0 0 0 chr6 44615707 44615733 -144663821 + AT_rich Low_complexity Low_complexity 1 26 0 2091 103 3 0 chr6 44615777 44616068 -144663486 + AluSx SINE Alu 1 292 -20 1013 206 38 10 chr6 44616159 44616368 -144663186 - MER20 DNA MER1_type -4 215 1 280 119 169 0 chr6 44616368 44616427 -144663127 - L1MC5 LINE L1 -139 7822 7754 1872 125 3 24 chr6 44616443 44616780 -144662774 - AluSx SINE Alu 0 331 1 1659 174 3 10 chr6 44616784 44617078 -144662476 - AluJo SINE Alu -20 292 1 1988 133 7 10 chr6 44617228 44617536 -144662018 - AluJo SINE Alu -5 307 1 1450 196 32 0 chr6 44618376 44618657 -144660897 + AluJb SINE Alu 1 290 -22 2186 121 0 6 chr6 44619507 44619821 -144659733 + AluSx SINE Alu 1 312 0 320 261 50 68 chr6 44620196 44620265 -144659289 - L1ME LINE L1 -297 5824 5755 1649 94 140 0 chr6 44620265 44620530 -144659024 - AluSx SINE Alu 0 302 1 320 261 50 68 chr6 44620530 44620621 -144658933 - L1ME LINE L1 -366 5755 5667 2266 97 3 0 chr6 44620979 44621279 -144658275 + AluSp SINE Alu 2 302 -11 498 154 55 0 chr6 44621502 44621593 -144657961 - L1MC3 LINE L1 -612 7173 7078 2187 96 0 10 chr6 44622084 44622387 -144657167 + AluSc SINE Alu 1 300 -9 21 0 0 0 chr6 44622649 44622670 -144656884 + AT_rich Low_complexity Low_complexity 1 21 0 410 303 8 0 chr6 44622942 44623061 -144656493 - Charlie8 DNA MER1_type -2154 263 144 573 147 45 106 chr6 44623090 44623288 -144656266 + L1MC5 LINE L1 7740 7925 -36 249 194 161 0 chr6 44623289 44623351 -144656203 - Charlie8 DNA MER1_type -2273 144 73 1933 105 36 4 chr6 44625279 44625604 -144653950 + AluSx SINE Alu 3 336 0 1704 172 16 7 chr6 44625610 44625918 -144653636 + AluJb SINE Alu 1 311 -1 653 212 0 0 chr6 44625934 44626052 -144653502 - FLAM_C SINE Alu -24 119 2 846 205 0 0 chr6 44626110 44626276 -144653278 - FRAM SINE Alu -11 165 1 2144 111 0 7 chr6 44626405 44626711 -144652843 + AluSg SINE Alu 1 304 -6 955 209 75 98 chr6 44626718 44627077 -144652477 + L1MC4a LINE L1 5521 5871 -1937 2465 47 3 0 chr6 44627119 44627416 -144652138 - AluY SINE Alu -13 298 1 2299 82 0 0 chr6 44627610 44627904 -144651650 + AluSc SINE Alu 1 294 -15 267 255 163 20 chr6 44627996 44628094 -144651460 - MER5A DNA MER1_type -25 164 53 1398 140 42 39 chr6 44628133 44628419 -144651135 + AluJb SINE Alu 1 287 -25 2062 106 0 0 chr6 44628745 44629051 -144650503 - AluSg SINE Alu 0 306 1 2416 60 0 0 chr6 44629145 44629446 -144650108 + AluY SINE Alu 1 301 -10 1246 117 66 5 chr6 44629683 44629879 -144649675 + AluJb SINE Alu 86 293 -19 2149 79 0 16 chr6 44630215 44630518 -144649036 - AluSq SINE Alu -15 298 1 2156 100 3 0 chr6 44630909 44631208 -144648346 + AluSx SINE Alu 1 300 -12 785 107 24 83 chr6 44631208 44631247 -144648307 + L1MDa LINE L1 2240 2280 -4260 2224 43 46 0 chr6 44631247 44631529 -144648025 + AluY SINE Alu 1 295 -16 785 107 24 83 chr6 44631529 44631658 -144647896 + L1MDa LINE L1 2280 2398 -4142 27 0 0 0 chr6 44631660 44631687 -144647867 + AT_rich Low_complexity Low_complexity 1 27 0 2210 94 0 3 chr6 44631687 44631996 -144647558 - AluY SINE Alu 0 311 4 2061 75 7 0 chr6 44632001 44632174 -144647380 - AluY SINE Alu 0 307 130 180 0 0 0 chr6 44632174 44632194 -144647360 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2061 75 7 0 chr6 44632194 44632325 -144647229 - AluY SINE Alu -177 130 1 2550 171 74 32 chr6 44632337 44632775 -144646779 + L1M4 LINE L1 4730 5199 -977 2137 128 0 6 chr6 44632775 44633088 -144646466 - AluSx SINE Alu -1 311 1 2550 171 74 32 chr6 44633088 44633334 -144646220 + L1M4 LINE L1 5199 5433 -743 452 270 35 0 chr6 44633325 44633440 -144646114 + L1MD1 LINE L1 3728 3846 -2300 * 2207 93 3 0 chr6 44633443 44633734 -144645820 + AluSp SINE Alu 1 292 -21 1039 69 0 0 chr6 44633739 44633870 -144645684 + AluSp SINE Alu 2 132 -181 1583 104 0 0 chr6 44633873 44634085 -144645469 + AluSq SINE Alu 85 296 -17 1258 204 106 0 chr6 44634096 44634453 -144645101 + L1MD1 LINE L1 3850 4244 -1902 744 217 0 32 chr6 44634456 44634613 -144644941 + AluJb SINE Alu 146 297 -15 1396 208 113 40 chr6 44634668 44635023 -144644531 + L1MD1 LINE L1 4266 4594 -1552 1497 148 84 47 chr6 44635023 44635321 -144644233 + AluSq SINE Alu 1 309 -4 1396 208 113 40 chr6 44635321 44635376 -144644178 + L1MD1 LINE L1 4594 4644 -1502 1258 178 106 0 chr6 44635376 44635651 -144643903 + AluJo SINE Alu 1 304 -8 1396 208 113 40 chr6 44635651 44635787 -144643767 + L1MD1 LINE L1 4644 4853 -1293 1852 133 4 0 chr6 44635788 44636066 -144643488 + AluSx SINE Alu 1 279 -33 479 200 0 11 chr6 44636069 44636159 -144643395 + AluJo SINE Alu 123 211 -101 2424 53 3 0 chr6 44636227 44636526 -144643028 + AluSp SINE Alu 11 310 -3 859 131 0 15 chr6 44636577 44636714 -144642840 + AluJb SINE Alu 1 135 -177 499 91 11 11 chr6 44636715 44636803 -144642751 + (TCTCCC)n Simple_repeat Simple_repeat 3 90 0 6482 51 17 76 chr6 44636813 44638574 -144640980 + SVA Other Other 3 1386 0 1069 139 5 59 chr6 44638574 44638776 -144640778 + AluJb SINE Alu 122 312 0 5457 139 19 56 chr6 44638777 44639437 -144640117 + L1MD1 LINE L1 5226 5909 -333 1872 146 0 16 chr6 44639437 44639753 -144639801 + AluJo SINE Alu 1 311 -1 5457 139 19 56 chr6 44639753 44639921 -144639633 + L1MD1 LINE L1 5909 6082 -160 2157 92 3 3 chr6 44639921 44640213 -144639341 + AluSx SINE Alu 1 292 -20 5457 139 19 56 chr6 44640213 44640369 -144639185 + L1MD1 LINE L1 6082 6171 -71 2012 110 38 0 chr6 44640369 44640659 -144638895 - AluSx SINE Alu -11 301 1 5457 139 19 56 chr6 44640659 44640729 -144638825 + L1MD1 LINE L1 6171 6242 0 233 29 0 29 chr6 44640764 44640799 -144638755 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 2134 86 17 0 chr6 44640799 44641080 -144638474 - AluSp SINE Alu -24 289 1 1829 137 7 0 chr6 44641664 44641949 -144637605 - AluJb SINE Alu -25 287 1 467 221 134 0 chr6 44642334 44642461 -144637093 + MIR3 SINE MIR 31 174 -34 212 379 0 0 chr6 44642712 44642778 -144636776 + L2 LINE L2 3205 3270 -2 21 36 0 0 chr6 44642987 44643015 -144636539 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 44643082 44643106 -144636448 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 44643487 44643509 -144636045 + GC_rich Low_complexity Low_complexity 1 22 0 208 143 0 0 chr6 44644919 44644954 -144634600 + MIR SINE MIR 132 166 -96 293 68 0 0 chr6 44644955 44644999 -144634555 + L1MA1 LINE L1 6039 6082 -220 1478 116 14 0 chr6 44645000 44645207 -144634347 + AluSg/x SINE Alu 83 292 -18 1273 75 35 0 chr6 44645207 44645381 -144634173 + L1MA1 LINE L1 6123 6302 0 337 197 66 0 chr6 44645385 44645461 -144634093 + MIR SINE MIR 168 248 -14 342 250 62 0 chr6 44645669 44645765 -144633789 - MIR SINE MIR -62 146 45 2427 69 3 16 chr6 44645820 44646124 -144633430 - AluSc SINE Alu -9 300 1 1707 149 35 10 chr6 44646127 44646415 -144633139 - AluJo SINE Alu -17 295 1 2350 83 0 19 chr6 44646426 44646738 -144632816 - AluSc SINE Alu -3 306 1 256 268 49 12 chr6 44647374 44647456 -144632098 - L2 LINE L2 -8 3305 3221 431 261 158 30 chr6 44647719 44647793 -144631761 + MIR SINE MIR 20 83 -179 1950 89 0 4 chr6 44647793 44648040 -144631514 - AluSc SINE Alu -63 246 1 431 261 158 30 chr6 44648040 44648168 -144631386 + MIR SINE MIR 83 248 -14 264 257 188 21 chr6 44648477 44648621 -144630933 - MIR3 SINE MIR -24 184 17 765 201 73 25 chr6 44648779 44648983 -144630571 - MIR SINE MIR -41 221 8 2359 227 87 15 chr6 44649013 44649611 -144629943 - L1ME3A LINE L1 -78 6092 5452 225 94 0 0 chr6 44649619 44649651 -144629903 + (T)n Simple_repeat Simple_repeat 1 32 0 2110 135 0 0 chr6 44649976 44650279 -144629275 - AluSx SINE Alu -9 303 1 1160 141 0 0 chr6 44650379 44650542 -144629012 + AluJb SINE Alu 135 297 -15 417 266 162 6 chr6 44650660 44650833 -144628721 + MIR SINE MIR 2 201 -61 1726 123 0 32 chr6 44651820 44652073 -144627481 - AluSx SINE Alu -67 245 1 952 234 139 35 chr6 44652520 44652739 -144626815 + MER20B DNA MER1_type 63 327 -456 2232 57 3 57 chr6 44652739 44653074 -144626480 - AluY SINE Alu 0 319 1 952 234 139 35 chr6 44653074 44653169 -144626385 + MER20B DNA MER1_type 327 411 -372 1219 106 0 22 chr6 44653223 44653411 -144626143 - AluSq SINE Alu 0 313 133 2243 80 35 0 chr6 44653411 44653698 -144625856 - AluSq SINE Alu -16 297 1 1219 106 0 22 chr6 44653698 44653716 -144625838 - AluSq SINE Alu -180 133 116 754 181 70 101 chr6 44653726 44653931 -144625623 + MER20B DNA MER1_type 501 696 -87 1999 122 7 33 chr6 44653931 44654234 -144625320 + AluJb SINE Alu 1 295 -17 754 181 70 101 chr6 44654234 44654315 -144625239 + MER20B DNA MER1_type 696 778 -5 795 201 3 145 chr6 44655858 44656049 -144623505 + MIR SINE MIR 15 231 -31 1677 176 47 0 chr6 44656049 44656328 -144623226 + AluJb SINE Alu 1 292 -20 795 201 3 145 chr6 44656328 44656348 -144623206 + MIR SINE MIR 231 252 -10 2130 139 0 0 chr6 44656348 44656649 -144622905 + AluSx SINE Alu 1 301 -11 854 153 0 29 chr6 44656654 44656791 -144622763 + FLAM_A SINE Alu 1 133 0 795 201 3 145 chr6 44656791 44656861 -144622693 + MIR SINE MIR 256 262 0 2066 112 11 0 chr6 44657718 44657996 -144621558 - AluSq SINE Alu -31 282 2 230 100 0 0 chr6 44658420 44658450 -144621104 - Alu SINE Alu -270 30 1 2141 107 4 4 chr6 44658795 44659076 -144620478 + AluSx SINE Alu 1 281 -31 499 253 40 74 chr6 44659076 44659099 -144620455 + L1M4 LINE L1 3126 3148 -2998 2423 87 3 10 chr6 44659099 44659411 -144620143 + AluSq SINE Alu 1 310 -3 499 253 40 74 chr6 44659411 44659623 -144619931 + L1M4 LINE L1 3148 3352 -2794 2020 138 24 0 chr6 44659623 44659914 -144619640 - AluJb SINE Alu -14 298 1 499 253 40 74 chr6 44659914 44659973 -144619581 + L1M4 LINE L1 3352 3411 -2735 530 263 49 49 chr6 44659976 44660149 -144619405 + L1M4 LINE L1 3522 3697 -2449 1953 151 3 3 chr6 44660149 44660441 -144619113 + AluJb SINE Alu 2 293 -19 530 263 49 49 chr6 44660441 44660491 -144619063 + L1M4 LINE L1 3696 3745 -2401 1439 136 30 53 chr6 44660493 44660587 -144618967 - Tigger2 DNA MER2_type 0 2718 2623 1857 124 40 4 chr6 44660587 44660893 -144618661 - AluSx SINE Alu 0 316 1 1439 136 30 53 chr6 44660893 44661061 -144618493 - Tigger2 DNA MER2_type -95 2623 2461 3845 153 17 48 chr6 44661130 44661537 -144618017 - Tigger2 DNA MER2_type -1974 744 367 1606 138 63 7 chr6 44661537 44661806 -144617748 - AluJo SINE Alu -28 284 1 3845 153 17 48 chr6 44661806 44662104 -144617450 - Tigger2 DNA MER2_type -2351 367 61 398 208 0 0 chr6 44662102 44662179 -144617375 + Tigger2 DNA MER2_type 259 335 -2383 * 904 251 86 14 chr6 44662191 44662482 -144617072 + L1M4 LINE L1 4518 4829 -1317 1350 185 44 47 chr6 44662489 44662624 -144616930 + AluJo SINE Alu 1 135 -177 1978 116 7 31 chr6 44662624 44662917 -144616637 + AluSx SINE Alu 20 305 -7 1350 185 44 47 chr6 44662917 44663078 -144616476 + AluJo SINE Alu 135 296 -16 2309 88 7 3 chr6 44663084 44663380 -144616174 + AluSq SINE Alu 1 297 -16 1387 185 83 22 chr6 44663515 44663791 -144615763 - AluJo SINE Alu -19 293 1 492 246 29 7 chr6 44664279 44664417 -144615137 + MIR3 SINE MIR 57 197 -11 2055 144 6 10 chr6 44665040 44665353 -144614201 - AluSx SINE Alu 0 312 1 373 270 98 6 chr6 44666018 44666192 -144613362 + MIR SINE MIR 47 236 -26 2043 138 0 0 chr6 44666279 44666587 -144612967 - AluSx SINE Alu 0 308 1 2080 115 7 16 chr6 44666678 44666983 -144612571 - AluSx SINE Alu -10 302 1 1862 152 7 26 chr6 44667360 44667670 -144611884 + AluJo SINE Alu 1 304 -8 27 0 0 0 chr6 44668011 44668038 -144611516 + AT_rich Low_complexity Low_complexity 1 27 0 1774 216 41 36 chr6 44668472 44668888 -144610666 - LTR40c LTR ERVL -13 452 35 2459 46 0 26 chr6 44668889 44669195 -144610359 - AluY SINE Alu -13 298 1 2031 159 0 0 chr6 44669224 44669526 -144610028 + AluJb SINE Alu 1 302 -10 1742 10 0 0 chr6 44670194 44670390 -144609164 - L1PA2 LINE L1 -3 6152 5957 698 224 13 6 chr6 44670892 44671048 -144608506 - L1MC5 LINE L1 -516 7445 7289 280 86 16 114 chr6 44671078 44671155 -144608399 - LTR40c LTR ERVL -1 518 407 1366 186 100 4 chr6 44671720 44671989 -144607565 - AluJo SINE Alu -7 295 1 2462 68 3 0 chr6 44671998 44672293 -144607261 - AluSp SINE Alu -17 296 1 685 31 62 21 chr6 44672482 44672578 -144606976 + HY3 scRNA scRNA 1 100 -1 2007 123 53 0 chr6 44673291 44673575 -144605979 - AluSq SINE Alu -13 300 2 2018 108 56 3 chr6 44673619 44673905 -144605649 + AluSq SINE Alu 1 301 -12 287 293 66 0 chr6 44674140 44674246 -144605308 - L2 LINE L2 0 3313 3201 346 217 29 21 chr6 44674449 44674569 -144604985 - L1MC5 LINE L1 0 8042 7924 1888 157 27 3 chr6 44674569 44674869 -144604685 - AluJo SINE Alu -1 311 5 346 217 29 21 chr6 44674869 44674885 -144604669 - L1MC5 LINE L1 -118 7924 7670 1266 167 14 5 chr6 44674987 44675202 -144604352 - AluSg/x SINE Alu -19 293 77 530 233 78 90 chr6 44675204 44675288 -144604266 - L1MC5 LINE L1 -219 7742 7658 2410 59 0 77 chr6 44675288 44675611 -144603943 + AluSq SINE Alu 1 298 -15 530 233 78 90 chr6 44675611 44675697 -144603857 - L1MC5 LINE L1 -303 7658 7572 2226 135 0 0 chr6 44675697 44676008 -144603546 - AluSx SINE Alu -1 311 1 530 233 78 90 chr6 44676008 44676313 -144603241 - L1MC5 LINE L1 -389 7572 7272 2076 133 7 3 chr6 44676333 44676635 -144602919 - AluSq SINE Alu -1 312 10 855 167 6 26 chr6 44676647 44676803 -144602751 - MLT1A1 LTR MaLR -212 153 1 1220 154 85 8 chr6 44676803 44677049 -144602505 - L1ME LINE L1 -360 5806 5542 2227 98 27 0 chr6 44677064 44677359 -144602195 - AluSx SINE Alu -9 303 1 1918 177 3 0 chr6 44677395 44677695 -144601859 - AluJb SINE Alu -11 301 1 932 282 75 3 chr6 44677736 44678041 -144601513 - L1MC4 LINE L1 -1013 7029 6703 2411 84 3 3 chr6 44678068 44678377 -144601177 + AluSc SINE Alu 1 309 0 2177 93 0 10 chr6 44678656 44678946 -144600608 - AluSq SINE Alu -3 310 24 706 236 24 118 chr6 44679103 44679204 -144600350 - L1MC4 LINE L1 -1854 5954 5845 2439 80 0 13 chr6 44679204 44679506 -144600048 + AluSg SINE Alu 1 298 -12 706 236 24 118 chr6 44679506 44679735 -144599819 - L1MC4 LINE L1 -1963 5845 5655 2198 138 3 0 chr6 44679783 44680094 -144599460 + AluSp SINE Alu 1 312 -1 1813 139 52 3 chr6 44680133 44680442 -144599112 - L1MB8 LINE L1 -11 6167 5844 238 182 0 0 chr6 44680451 44680495 -144599059 + L1MB8 LINE L1 5810 5853 -331 641 232 53 0 chr6 44680504 44680655 -144598899 - L1ME3A LINE L1 -262 5908 5750 1760 130 13 63 chr6 44680669 44680845 -144598709 - AluSx SINE Alu -9 303 147 2069 121 0 36 chr6 44680845 44681150 -144598404 - AluSg SINE Alu -16 294 1 1760 130 13 63 chr6 44681150 44681274 -144598280 - AluSx SINE Alu -165 147 18 397 233 69 9 chr6 44681277 44681344 -144598210 + L1MC4 LINE L1 6062 6140 -1902 2219 93 0 33 chr6 44681344 44681644 -144597910 + AluSg SINE Alu 1 290 -20 397 233 69 9 chr6 44681644 44681692 -144597862 + L1MC4 LINE L1 6140 6184 -1858 706 224 178 4 chr6 44681711 44681975 -144597579 - L1ME3A LINE L1 -454 5712 5403 981 239 48 67 chr6 44681976 44682166 -144597388 - L1ME3A LINE L1 -766 5380 5188 2470 87 0 0 chr6 44682166 44682465 -144597089 - AluSq SINE Alu -14 299 1 981 239 48 67 chr6 44682465 44682814 -144596740 - L1ME3A LINE L1 -958 5188 4851 428 183 120 57 chr6 44682817 44682857 -144596697 - L1MB8 LINE L1 -2369 5439 5403 2372 92 0 0 chr6 44682857 44683150 -144596404 - AluSc SINE Alu -16 293 1 1826 179 3 7 chr6 44683150 44683457 -144596097 - AluJb SINE Alu -5 307 2 2016 126 3 46 chr6 44683461 44683787 -144595767 - AluJo SINE Alu 0 312 1 428 183 120 57 chr6 44683787 44683915 -144595639 - L1MB8 LINE L1 -2407 5401 5254 894 189 122 45 chr6 44684124 44684346 -144595208 - MER8 DNA MER2_type 0 239 1 2299 90 17 0 chr6 44684686 44684985 -144594569 + AluSc SINE Alu 3 306 -3 979 199 0 0 chr6 44684993 44685154 -144594400 + FRAM SINE Alu 1 161 -5 298 337 5 74 chr6 44687561 44687751 -144591803 + MER5B DNA MER1_type 1 177 -1 257 215 23 115 chr6 44687953 44688083 -144591471 + MIR SINE MIR 81 198 -64 969 150 7 0 chr6 44688297 44688437 -144591117 + AluJo SINE Alu 1 141 -171 1862 146 21 7 chr6 44688446 44688726 -144590828 + AluJo SINE Alu 9 292 -20 1539 189 47 0 chr6 44689700 44689996 -144589558 + AluJb SINE Alu 1 310 -2 2360 75 4 0 chr6 44690006 44690287 -144589267 + AluSp SINE Alu 1 282 -31 1169 153 30 125 chr6 44690438 44690593 -144588961 + MER33 DNA MER1_type 1 156 -2429 2448 124 100 96 chr6 44690593 44691205 -144588349 - LTR18B LTR ERVL 0 614 1 1169 153 30 125 chr6 44691205 44691307 -144588247 + MER33 DNA MER1_type 156 266 -2319 2252 95 0 43 chr6 44691307 44691633 -144587921 + AluSq SINE Alu 1 312 -1 1169 153 30 125 chr6 44691633 44691658 -144587896 + MER33 DNA MER1_type 266 233 -2352 2295 79 14 3 chr6 44691658 44691949 -144587605 - AluY SINE Alu -17 294 1 1169 153 30 125 chr6 44691949 44692025 -144587529 + MER33 DNA MER1_type 232 314 -10 626 216 8 15 chr6 44692037 44692171 -144587383 - FLAM_A SINE Alu 0 133 1 32 0 0 0 chr6 44692175 44692207 -144587347 + AT_rich Low_complexity Low_complexity 1 32 0 1462 121 0 10 chr6 44692207 44692406 -144587148 - AluSq SINE Alu -116 197 1 582 124 160 108 chr6 44692447 44692641 -144586913 - MER3 DNA MER1_type -5 204 1 289 208 19 0 chr6 44693241 44693294 -144586260 + MER106A DNA MER1_type 1 54 -182 957 182 87 9 chr6 44693295 44693526 -144586028 - L1MB8 LINE L1 0 7597 7349 347 219 0 14 chr6 44693526 44693599 -144585955 + MER106B DNA MER1_type 40 111 -948 591 89 13 0 chr6 44693599 44693678 -144585876 + AluJ/FLAM SINE Alu 1 80 -232 22 35 0 0 chr6 44693678 44693707 -144585847 + AT_rich Low_complexity Low_complexity 1 29 0 1770 123 89 150 chr6 44693707 44694019 -144585535 + MER106B DNA MER1_type 100 374 -685 1937 179 0 0 chr6 44694019 44694321 -144585233 - AluJo SINE Alu -10 302 1 1770 123 89 150 chr6 44694321 44694489 -144585065 + MER106B DNA MER1_type 374 551 -508 1285 96 25 0 chr6 44694495 44694693 -144584861 - L1MA3 LINE L1 0 6305 6103 6623 185 34 121 chr6 44694693 44695009 -144584545 - L1MB8 LINE L1 -562 7162 6820 2407 93 0 7 chr6 44695009 44695319 -144584235 - AluY SINE Alu -3 308 1 1952 155 3 0 chr6 44695322 44695612 -144583942 - AluSx SINE Alu -21 291 1 6623 185 34 121 chr6 44695612 44696371 -144583183 - L1MB8 LINE L1 -906 6818 5994 248 0 31 0 chr6 44696371 44696403 -144583151 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 6623 185 34 121 chr6 44696403 44696464 -144583090 - L1MB8 LINE L1 -1730 5994 5929 1180 152 0 0 chr6 44696464 44696628 -144582926 - AluJb SINE Alu -20 292 129 6623 185 34 121 chr6 44696628 44696646 -144582908 - L1MB8 LINE L1 -1795 5929 5911 2455 62 0 3 chr6 44696646 44696934 -144582620 - AluY SINE Alu -24 287 1 6623 185 34 121 chr6 44696934 44697192 -144582362 - L1MB8 LINE L1 -1813 5911 5632 2113 119 0 0 chr6 44697192 44697469 -144582085 - AluSx SINE Alu -22 290 14 6623 185 34 121 chr6 44697469 44698949 -144580605 - L1MB8 LINE L1 -2092 5632 4449 1832 156 10 3 chr6 44698950 44699245 -144580309 - AluJb SINE Alu -2 310 14 619 115 0 0 chr6 44699245 44699332 -144580222 + AluJb SINE Alu 207 293 -19 189 0 0 0 chr6 44699339 44699360 -144580194 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 2202 128 0 0 chr6 44699361 44699658 -144579896 + AluSx SINE Alu 1 297 -15 21201 134 45 33 chr6 44699661 44700024 -144579530 - L1MB8 LINE L1 -3810 3755 3398 2074 147 20 0 chr6 44700024 44700330 -144579224 - AluSx SINE Alu 0 312 1 21201 134 45 33 chr6 44700330 44700899 -144578655 - L1MB8 LINE L1 -4167 3398 2837 2268 88 3 20 chr6 44700899 44701196 -144578358 + AluSp SINE Alu 7 298 -15 21201 134 45 33 chr6 44701196 44701743 -144577811 - L1MB8 LINE L1 -4728 2837 2298 1495 183 38 38 chr6 44701743 44702032 -144577522 - AluJo SINE Alu -23 289 1 21201 134 45 33 chr6 44702032 44703571 -144575983 - L1MB8 LINE L1 -5267 2298 779 441 0 0 0 chr6 44703571 44703620 -144575934 + (TCTCC)n Simple_repeat Simple_repeat 4 52 0 21201 134 45 33 chr6 44703620 44704212 -144575342 - L1MB8 LINE L1 -6786 779 95 1051 172 121 79 chr6 44704212 44704502 -144575052 - AluJb SINE Alu 0 302 1 21201 134 45 33 chr6 44704502 44704590 -144574964 - L1MB8 LINE L1 -7470 95 10 2142 107 7 4 chr6 44704593 44704899 -144574655 - AluSx SINE Alu 0 307 1 1602 157 87 23 chr6 44704899 44704972 -144574582 + MER106B DNA MER1_type 541 608 -451 2136 110 0 29 chr6 44704972 44705281 -144574273 + AluSg SINE Alu 1 300 -10 1602 157 87 23 chr6 44705281 44705692 -144573862 + MER106B DNA MER1_type 608 1056 -3 532 264 16 0 chr6 44710819 44710944 -144568610 - FLAM_A SINE Alu -6 127 1 265 273 58 65 chr6 44711045 44711184 -144568370 - MIR SINE MIR -73 189 52 371 240 10 42 chr6 44711238 44711334 -144568220 - L2 LINE L2 -1 3271 3179 827 232 27 13 chr6 44711593 44711841 -144567713 - MIR SINE MIR 0 262 16 2057 108 45 7 chr6 44712175 44712463 -144567091 - AluJb SINE Alu -13 299 1 612 215 51 99 chr6 44712474 44712767 -144566787 - L1ME4a LINE L1 -3 6118 5840 721 225 0 0 chr6 44712784 44712922 -144566632 - FLAM_C SINE Alu -5 138 1 648 233 29 94 chr6 44712922 44713134 -144566420 - L1ME4a LINE L1 -292 5829 5641 2285 82 7 0 chr6 44713134 44713446 -144566108 + AluY SINE Alu 1 314 0 648 233 29 94 chr6 44713446 44713541 -144566013 - L1ME4a LINE L1 -480 5641 5541 285 172 118 75 chr6 44713556 44713590 -144565964 - MER5A DNA MER1_type -26 163 132 2322 103 0 0 chr6 44713590 44713892 -144565662 + AluY SINE Alu 1 302 -9 285 172 118 75 chr6 44713892 44713950 -144565604 - MER5A DNA MER1_type -57 132 67 1985 133 10 3 chr6 44713950 44714244 -144565310 - AluJb SINE Alu -16 296 1 217 288 0 15 chr6 44714284 44714350 -144565204 + MIR3 SINE MIR 122 186 -22 234 238 138 12 chr6 44714622 44714702 -144564852 + L2 LINE L2 3221 3310 -3 180 0 0 0 chr6 44715560 44715580 -144563974 + (T)n Simple_repeat Simple_repeat 1 20 0 2132 122 7 0 chr6 44715723 44716018 -144563536 + AluSx SINE Alu 1 297 -15 457 171 27 96 chr6 44716033 44716179 -144563375 - L1MA7 LINE L1 -1 6290 6155 * 3341 165 29 21 chr6 44716171 44716800 -144562754 - L1MA8 LINE L1 -235 6056 5423 375 212 8 59 chr6 44716847 44716965 -144562589 - L1MC5 LINE L1 -26 7935 7824 473 103 15 0 chr6 44716969 44717037 -144562517 + AluS SINE Alu 3 71 -241 2087 98 41 10 chr6 44717170 44717465 -144562089 + AluSg SINE Alu 1 304 -6 652 209 12 78 chr6 44717466 44717601 -144561953 - L1MC5 LINE L1 -131 7830 7717 2601 137 30 2 chr6 44717601 44718040 -144561514 - L1MB3 LINE L1 0 6183 5733 652 209 12 78 chr6 44718040 44718148 -144561406 - L1MC5 LINE L1 -244 7717 7603 28 0 0 26 chr6 44719049 44719063 -144560491 + AT_rich Low_complexity Low_complexity 1 14 -24 2331 80 7 0 chr6 44719063 44719350 -144560204 + AluSq SINE Alu 1 289 -24 28 0 0 26 chr6 44719350 44719374 -144560180 + AT_rich Low_complexity Low_complexity 14 38 0 1430 183 107 8 chr6 44719374 44719478 -144560076 + AluJo SINE Alu 1 93 -219 2236 113 0 3 chr6 44719478 44719779 -144559775 + AluSx SINE Alu 1 300 -12 1430 183 107 8 chr6 44719779 44719936 -144559618 + AluJo SINE Alu 93 288 -24 2036 140 13 7 chr6 44720032 44720339 -144559215 - AluSx SINE Alu -3 309 1 410 254 35 12 chr6 44720509 44720678 -144558876 - L1ME3A LINE L1 -220 5950 5778 2062 127 16 10 chr6 44720678 44720985 -144558569 - AluSx SINE Alu -2 310 2 639 152 159 0 chr6 44720994 44721139 -144558415 - L1MB7 LINE L1 0 6184 6017 654 255 44 81 chr6 44721140 44721438 -144558116 - L1ME3A LINE L1 -391 5779 5493 598 269 124 0 chr6 44721653 44721854 -144557700 + MIR SINE MIR 2 227 -35 215 345 27 9 chr6 44722371 44722481 -144557073 + MIR SINE MIR 39 150 -58 635 95 0 0 chr6 44724880 44724964 -144554590 + HY3 scRNA scRNA 13 96 -5 207 309 25 25 chr6 44725120 44725201 -144554353 + L3 LINE CR1 584 664 -913 2267 109 0 0 chr6 44725284 44725586 -144553968 + AluSc SINE Alu 1 302 -7 1505 171 41 8 chr6 44729034 44729309 -144550245 + AluJo SINE Alu 30 312 0 1730 174 10 16 chr6 44729960 44730271 -144549283 + AluJo SINE Alu 1 309 -3 822 150 0 0 chr6 44730271 44730384 -144549170 + AluJo/FRAM SINE Alu 134 246 -66 31 0 0 0 chr6 44730431 44730462 -144549092 + AT_rich Low_complexity Low_complexity 1 31 0 453 73 0 0 chr6 44730462 44730517 -144549037 + Alu SINE Alu 234 288 -24 873 246 117 21 chr6 44731872 44732373 -144547181 + L1ME4a LINE L1 5318 5884 -237 417 170 138 0 chr6 44732426 44732520 -144547034 + L1ME4a LINE L1 6011 6117 -4 2294 112 0 3 chr6 44732723 44733035 -144546519 - AluSx SINE Alu -1 311 1 2198 106 7 0 chr6 44733095 44733388 -144546166 + AluSq SINE Alu 1 295 -18 2373 108 0 0 chr6 44733399 44733705 -144545849 + AluSx SINE Alu 1 306 -6 180 0 0 0 chr6 44733705 44733725 -144545829 + (CATAA)n Simple_repeat Simple_repeat 4 23 0 809 128 17 8 chr6 44733725 44733842 -144545712 - AluJb SINE Alu -194 118 1 5903 78 25 27 chr6 44734782 44735630 -144543924 + L1PA12 LINE L1 5308 6153 -15 21 71 0 0 chr6 44736022 44736064 -144543490 + AT_rich Low_complexity Low_complexity 1 42 0 445 222 208 0 chr6 44736125 44736269 -144543285 - FRAM SINE Alu -2 174 1 284 293 68 23 chr6 44736270 44736403 -144543151 - L1M4 LINE L1 -3058 3088 2950 1425 148 54 67 chr6 44736729 44736877 -144542677 + AluJo SINE Alu 1 146 -166 2155 90 0 28 chr6 44736877 44737190 -144542364 + AluSg SINE Alu 1 305 0 1425 148 54 67 chr6 44737190 44737338 -144542216 + AluJo SINE Alu 146 294 -18 629 81 0 20 chr6 44737348 44737447 -144542107 + AluY SINE Alu 214 310 -1 2371 95 16 0 chr6 44737495 44737801 -144541753 - AluSq SINE Alu 0 313 3 2138 69 0 4 chr6 44738061 44738322 -144541232 + AluSg SINE Alu 3 262 -48 204 222 178 33 chr6 44739574 44739664 -144539890 - L2 LINE L2 0 3313 3211 23 0 0 0 chr6 44740245 44740268 -144539286 + GC_rich Low_complexity Low_complexity 1 23 0 378 100 0 0 chr6 44740539 44740599 -144538955 + (CGG)n Simple_repeat Simple_repeat 2 61 0 2414 70 7 0 chr6 44741127 44741427 -144538127 - AluSx SINE Alu -10 302 1 244 252 118 16 chr6 44742144 44742271 -144537283 - L2 LINE L2 -214 3058 2919 273 292 0 0 chr6 44742390 44742462 -144537092 + L2 LINE L2 3201 3272 0 2247 95 0 3 chr6 44742668 44742964 -144536590 - AluSc SINE Alu -14 295 1 532 286 111 0 chr6 44744044 44744261 -144535293 + MIR SINE MIR 5 245 -17 883 138 0 0 chr6 44744344 44744474 -144535080 - FLAM_C SINE Alu -3 130 1 1980 141 0 41 chr6 44745407 44745727 -144533827 + AluJb SINE Alu 1 307 -5 645 160 0 113 chr6 44746235 44746385 -144533169 - FLAM_A SINE Alu 0 133 1 1866 116 95 0 chr6 44746815 44747100 -144532454 - AluSx SINE Alu 0 312 1 2048 142 3 13 chr6 44747100 44747410 -144532144 - AluSx SINE Alu -5 307 1 758 135 0 117 chr6 44747668 44747720 -144531834 + AluJb SINE Alu 85 141 -171 2338 99 3 3 chr6 44747720 44748024 -144531530 + AluSq SINE Alu 1 304 -9 758 135 0 117 chr6 44748024 44748134 -144531420 + AluJb SINE Alu 141 228 -84 418 298 151 5 chr6 44748932 44749137 -144530417 + MIR SINE MIR 13 247 -15 899 167 118 9 chr6 44749353 44749632 -144529922 - MER46C DNA MER2_type 0 338 2 686 258 131 16 chr6 44749637 44750025 -144529529 - L1ME4a LINE L1 -30 6091 5659 844 138 0 15 chr6 44750402 44750532 -144529022 + FLAM_C SINE Alu 1 128 -5 268 164 0 55 chr6 44750560 44750615 -144528939 - FLAM SINE Alu -6 127 76 585 220 42 42 chr6 44751061 44751252 -144528302 - MIR SINE MIR -12 250 60 727 175 4 158 chr6 44751435 44751510 -144528044 - MIR SINE MIR -46 216 131 790 178 0 0 chr6 44751510 44751628 -144527926 - FLAM_C SINE Alu -15 118 1 727 175 4 158 chr6 44751628 44751798 -144527756 - MIR SINE MIR -131 131 9 1916 182 0 0 chr6 44752544 44752846 -144526708 - AluJo SINE Alu -8 304 3 2321 97 6 0 chr6 44753274 44753585 -144525969 - AluSp SINE Alu 0 313 1 1197 83 45 0 chr6 44753701 44753857 -144525697 + AluSg/x SINE Alu 137 299 -13 1102 144 70 144 chr6 44754385 44754529 -144525025 - AluJo SINE Alu -14 298 186 2080 93 3 71 chr6 44754529 44754852 -144524702 - AluSc SINE Alu -8 301 1 1102 144 70 144 chr6 44754852 44755005 -144524549 - AluJo SINE Alu -126 186 23 1887 175 24 6 chr6 44755089 44755427 -144524127 + MER2 DNA MER2_type 1 344 0 21 0 0 0 chr6 44755467 44755488 -144524066 + AT_rich Low_complexity Low_complexity 1 21 0 2233 115 0 0 chr6 44755489 44755785 -144523769 + AluSc SINE Alu 1 296 -13 2040 147 13 0 chr6 44755842 44756148 -144523406 - AluSx SINE Alu -2 310 1 420 238 60 46 chr6 44756519 44756670 -144522884 - MIR SINE MIR -12 250 98 283 289 0 22 chr6 44757103 44757193 -144522361 + MIR SINE MIR 57 144 -118 196 224 0 0 chr6 44757299 44757348 -144522206 - MIR SINE MIR -15 247 199 1213 195 61 0 chr6 44757554 44757800 -144521754 + L1MD3 LINE L1 7016 7276 -719 543 272 14 14 chr6 44757802 44757949 -144521605 + MLT1F1 LTR MaLR 1 147 -420 2733 156 63 49 chr6 44757949 44758386 -144521168 + L1MD3 LINE L1 7424 7872 -123 1208 244 0 0 chr6 44758386 44758624 -144520930 + MER8 DNA MER2_type 1 238 -1 2733 156 63 49 chr6 44758624 44758739 -144520815 + L1MD3 LINE L1 7872 7984 -11 597 275 84 0 chr6 44758766 44758944 -144520610 + MIR SINE MIR 29 221 -41 769 183 8 0 chr6 44758948 44759079 -144520475 + FLAM_C SINE Alu 2 133 0 651 262 79 5 chr6 44759976 44760178 -144519376 - L1ME3 LINE L1 -7 6155 5939 194 269 102 9 chr6 44760611 44760719 -144518835 - L2 LINE L2 -18 3254 3137 1694 172 14 14 chr6 44761319 44761610 -144517944 + AluJo SINE Alu 1 291 -21 2266 122 3 3 chr6 44761616 44761927 -144517627 + AluSx SINE Alu 1 311 -1 180 0 0 0 chr6 44761934 44761954 -144517600 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 267 290 0 0 chr6 44764067 44764136 -144515418 - L2 LINE L2 -14 3258 3190 1523 194 73 0 chr6 44764371 44764644 -144514910 - AluJb SINE Alu -19 293 1 1687 147 85 0 chr6 44764657 44764952 -144514602 - AluSx SINE Alu 0 317 1 2351 81 0 14 chr6 44764962 44765258 -144514296 - AluY SINE Alu -19 292 1 27 73 0 0 chr6 44765363 44765418 -144514136 + AT_rich Low_complexity Low_complexity 1 55 0 214 218 109 0 chr6 44766023 44766078 -144513476 + MIR SINE MIR 88 148 -114 285 278 45 38 chr6 44766193 44766326 -144513228 + L2 LINE L2 3180 3313 0 1203 181 10 0 chr6 44766468 44766667 -144512887 - AluJo SINE Alu -94 218 18 2307 121 0 0 chr6 44767024 44767330 -144512224 - AluSx SINE Alu -6 306 1 755 263 95 4 chr6 44769285 44769517 -144510037 + MIR SINE MIR 9 261 -1 2307 97 3 7 chr6 44769880 44770188 -144509366 - AluSx SINE Alu -5 307 1 865 224 79 0 chr6 44770632 44770860 -144508694 + MIR SINE MIR 12 257 -5 1939 158 0 3 chr6 44771241 44771539 -144508015 - AluJo SINE Alu 0 312 16 1668 153 29 22 chr6 44772759 44773033 -144506521 - AluJo SINE Alu -36 276 1 516 179 85 0 chr6 44773050 44773156 -144506398 - FLAM_A SINE Alu -5 137 23 617 274 133 0 chr6 44773206 44773432 -144506122 - MIR SINE MIR -6 256 1 2235 100 7 3 chr6 44773728 44774028 -144505526 - AluSc SINE Alu -8 301 1 545 269 86 0 chr6 44774501 44774698 -144504856 - MIR SINE MIR -2 260 47 342 0 0 0 chr6 44775128 44775166 -144504388 + (TG)n Simple_repeat Simple_repeat 2 39 0 928 164 6 6 chr6 44775804 44775963 -144503591 - AluJb SINE Alu -23 289 131 900 158 44 92 chr6 44776779 44777007 -144502547 + MER20 DNA MER1_type 2 218 -1 606 237 182 0 chr6 44777968 44778166 -144501388 + MIR SINE MIR 12 245 -17 539 278 65 9 chr6 44779597 44779813 -144499741 - MIR SINE MIR -27 235 8 310 209 12 35 chr6 44779956 44780042 -144499512 + MIR SINE MIR 46 129 -133 506 255 7 0 chr6 44780761 44780914 -144498640 + CT-rich Low_complexity Low_complexity 2 155 0 270 322 35 41 chr6 44781442 44781613 -144497941 + MIR SINE MIR 23 192 -70 1986 95 4 8 chr6 44781917 44782180 -144497374 - AluSp SINE Alu -15 298 37 2363 103 0 3 chr6 44782183 44782485 -144497069 - AluSx SINE Alu -11 301 1 1473 126 36 5 chr6 44783208 44783463 -144496091 - AluSx SINE Alu 0 314 53 2000 119 0 0 chr6 44783468 44783721 -144495833 - AluSx SINE Alu -58 254 2 2536 179 77 0 chr6 44783726 44784233 -144495321 - L1M4 LINE L1 -356 5822 5277 2127 73 4 0 chr6 44784410 44784671 -144494883 - AluSp SINE Alu -15 298 37 243 0 0 0 chr6 44785174 44785201 -144494353 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2327 67 0 3 chr6 44785203 44785485 -144494069 - AluY SINE Alu -30 281 1 1816 170 0 0 chr6 44786135 44786424 -144493130 - AluJo SINE Alu -23 289 1 2931 0 0 0 chr6 44786818 44787124 -144492430 + AluYa5 SINE Alu 1 306 -5 207 60 60 40 chr6 44788037 44788087 -144491467 + (CATA)n Simple_repeat Simple_repeat 2 52 0 750 143 8 0 chr6 44788230 44788349 -144491205 + FLAM_C SINE Alu 5 124 -9 25 0 0 0 chr6 44788349 44788374 -144491180 + AT_rich Low_complexity Low_complexity 1 25 0 523 269 36 0 chr6 44788374 44788541 -144491013 + MIR SINE MIR 41 213 -49 2282 103 0 0 chr6 44789745 44790045 -144489509 + AluSg SINE Alu 1 300 -10 991 175 0 24 chr6 44790604 44790770 -144488784 + FRAM SINE Alu 1 162 -4 29 0 0 25 chr6 44791653 44791678 -144487876 + AT_rich Low_complexity Low_complexity 1 26 -13 2221 92 11 0 chr6 44791678 44791960 -144487594 + AluSq SINE Alu 13 297 -16 29 0 0 25 chr6 44791960 44791974 -144487580 + AT_rich Low_complexity Low_complexity 26 39 0 2305 81 3 0 chr6 44792034 44792318 -144487236 - AluSg SINE Alu -20 290 6 940 143 0 0 chr6 44792472 44792605 -144486949 - FLAM_C SINE Alu -10 133 1 263 221 154 29 chr6 44792631 44792767 -144486787 - L1M4 LINE L1 -2188 3958 3806 399 163 59 22 chr6 44793851 44793986 -144485568 + CT-rich Low_complexity Low_complexity 1 140 0 1325 223 72 0 chr6 44794001 44794292 -144485262 - AluJo SINE Alu 0 312 1 3987 149 68 49 chr6 44794292 44795029 -144484525 - L1MC2 LINE L1 -29 6315 5593 2317 74 7 17 chr6 44795029 44795325 -144484229 + AluY SINE Alu 1 293 -18 3987 149 68 49 chr6 44795325 44795619 -144483935 - L1MC2 LINE L1 -751 5593 5306 1134 227 71 9 chr6 44795619 44795844 -144483710 + MER8 DNA MER2_type 1 239 0 3987 149 68 49 chr6 44795844 44796110 -144483444 - L1MC2 LINE L1 -1038 5306 5046 1937 154 3 10 chr6 44796110 44796415 -144483139 - AluJb SINE Alu -9 303 1 3987 149 68 49 chr6 44796415 44796668 -144482886 - L1MC2 LINE L1 -1298 5046 4744 310 175 175 38 chr6 44796670 44796750 -144482804 + Tigger1 DNA MER2_type 3 93 -2325 755 247 18 14 chr6 44796763 44796986 -144482568 - L1MC2 LINE L1 -2659 3487 3264 2317 119 0 0 chr6 44797006 44797318 -144482236 - AluSx SINE Alu 0 312 1 2251 122 0 0 chr6 44797343 44797638 -144481916 + AluSx SINE Alu 1 295 -17 278 164 0 18 chr6 44797644 44797699 -144481855 - L1MC2 LINE L1 -2895 3251 3198 233 248 60 60 chr6 44797938 44798055 -144481499 + MIR3 SINE MIR 3 119 -89 2285 115 0 3 chr6 44798180 44798484 -144481070 - AluSx SINE Alu -9 303 1 859 80 0 0 chr6 44799072 44799185 -144480369 - L1PA5 LINE L1 -2 6152 6040 284 215 229 8 chr6 44799956 44800088 -144479466 + MIR3 SINE MIR 4 165 -43 244 75 0 25 chr6 44801087 44801127 -144478427 - MER31B LTR ERV1 0 466 428 577 182 20 20 chr6 44801133 44801232 -144478322 + FRAM SINE Alu 63 161 -15 2448 83 0 6 chr6 44801252 44801566 -144477988 - AluSx SINE Alu 0 312 1 1698 154 72 77 chr6 44801566 44801994 -144477560 - MER31B LTR ERV1 -40 426 1 204 143 43 43 chr6 44802272 44802342 -144477212 + (TTATA)n Simple_repeat Simple_repeat 1 70 0 373 302 187 11 chr6 44803126 44803308 -144476246 + MIR SINE MIR 49 262 0 2316 106 0 3 chr6 44803745 44804048 -144475506 - AluSx SINE Alu -10 302 1 242 298 73 121 chr6 44804151 44804466 -144475088 - L2 LINE L2 -25 3247 2948 223 200 53 80 chr6 44804764 44804839 -144474715 - L2 LINE L2 -39 3233 3161 181 83 56 0 chr6 44805387 44805423 -144474131 + (TG)n Simple_repeat Simple_repeat 1 38 0 3642 248 168 45 chr6 44805825 44806162 -144473392 - HAL1 LINE L1 -104 2403 2109 2426 99 0 0 chr6 44806162 44806474 -144473080 - AluSx SINE Alu 0 312 1 3642 248 168 45 chr6 44806474 44808264 -144471290 - HAL1 LINE L1 -398 2109 14 279 300 100 61 chr6 44808846 44809028 -144470526 + MIR SINE MIR 20 206 -56 229 315 92 0 chr6 44809118 44809248 -144470306 + L2 LINE L2 2267 2408 -906 194 333 83 10 chr6 44809649 44809745 -144469809 + L2 LINE L2 2780 2882 -432 284 286 138 66 chr6 44809810 44810006 -144469548 + L2 LINE L2 2973 3182 -90 781 244 74 49 chr6 44811108 44811473 -144468081 + L2 LINE L2 2888 3261 -52 340 350 16 0 chr6 44811896 44812019 -144467535 - MIR SINE MIR -121 141 17 5869 129 21 31 chr6 44813388 44813543 -144466011 - L1MA8 LINE L1 -1 6290 6135 2226 81 0 14 chr6 44813543 44813862 -144465692 + AluSc SINE Alu 1 315 0 5869 129 21 31 chr6 44813862 44813889 -144465665 - L1MA8 LINE L1 -156 6135 6109 2336 113 0 0 chr6 44813889 44814199 -144465355 - AluSx SINE Alu -2 310 1 5869 129 21 31 chr6 44814199 44815158 -144464396 - L1MA8 LINE L1 -182 6109 5157 769 257 64 75 chr6 44815528 44815960 -144463594 - L1MC4a LINE L1 -305 5816 5463 2160 134 3 0 chr6 44816382 44816688 -144462866 - AluSx SINE Alu -5 307 1 414 323 121 31 chr6 44816723 44816790 -144462764 + L1M4 LINE L1 3507 3567 -2579 1959 152 14 0 chr6 44816790 44817080 -144462474 - AluSx SINE Alu -18 294 1 414 323 121 31 chr6 44817080 44817591 -144461963 + L1M4 LINE L1 3567 4167 -1979 1709 154 19 45 chr6 44818443 44818755 -144460799 + AluJo SINE Alu 1 304 -8 2572 75 0 0 chr6 44819467 44819775 -144459779 - AluSq SINE Alu -5 308 1 2107 116 0 3 chr6 44820283 44820592 -144458962 - AluSx SINE Alu 0 308 1 429 132 0 15 chr6 44821502 44821570 -144457984 + MER2 DNA MER2_type 32 98 -247 249 310 0 0 chr6 44821573 44821631 -144457923 - MER2 DNA MER2_type -3 342 285 1782 142 3 64 chr6 44821744 44822055 -144457499 + AluJo SINE Alu 1 292 -20 350 194 42 0 chr6 44824865 44824937 -144454617 + C-rich Low_complexity Low_complexity 4 78 0 612 143 54 0 chr6 44824937 44825105 -144454449 + CT-rich Low_complexity Low_complexity 4 180 0 724 196 17 0 chr6 44825126 44825299 -144454255 + C-rich Low_complexity Low_complexity 3 178 0 566 59 0 119 chr6 44825260 44825462 -144454092 + (TTCCC)n Simple_repeat Simple_repeat 1 178 0 * 333 158 18 0 chr6 44825468 44825525 -144454029 - Alu SINE Alu -3 299 242 646 278 76 5 chr6 44825640 44825838 -144453716 + MIR SINE MIR 25 236 -26 2140 100 21 0 chr6 44826234 44826515 -144453039 + AluSx SINE Alu 26 312 0 1471 151 50 25 chr6 44826523 44826802 -144452752 + AluJo SINE Alu 7 292 -20 2309 111 3 0 chr6 44826894 44827201 -144452353 + AluSx SINE Alu 1 308 -4 189 315 55 14 chr6 44827579 44827652 -144451902 - L3 LINE CR1 -7 1570 1495 184 111 67 67 chr6 44827641 44827686 -144451868 + MER5B DNA MER1_type 10 54 -124 * 2082 216 80 55 chr6 44827717 44827805 -144451749 - L1MC4 LINE L1 -32 8010 7926 282 56 0 0 chr6 44827805 44827841 -144451713 + (TG)n Simple_repeat Simple_repeat 1 36 0 2082 216 80 55 chr6 44827841 44828401 -144451153 - L1MC4 LINE L1 -116 7926 7346 428 331 128 53 chr6 44828492 44828851 -144450703 - L3 LINE CR1 -44 1533 1148 2062 142 3 0 chr6 44828992 44829294 -144450260 - AluSg SINE Alu -7 303 1 760 164 0 0 chr6 44830279 44830401 -144449153 + FRAM SINE Alu 55 176 0 454 273 10 108 chr6 44832041 44832235 -144447319 - MIR3 SINE MIR -4 204 30 369 270 0 0 chr6 44832666 44832755 -144446799 + L1MC4 LINE L1 6615 6703 -1339 329 311 0 0 chr6 44832699 44832789 -144446765 - L1MC4 LINE L1 -1339 6703 6614 * 459 174 0 0 chr6 44832789 44832875 -144446679 + (TG)n Simple_repeat Simple_repeat 2 87 0 2456 62 0 0 chr6 44835814 44836102 -144443452 - AluY SINE Alu -23 288 1 844 173 268 0 chr6 44836130 44836298 -144443256 - MER58A DNA MER1_type -11 213 1 2371 138 28 0 chr6 44838146 44838502 -144441052 + MER47A DNA MER2_type 1 366 0 2231 106 0 13 chr6 44840323 44840626 -144438928 + AluSg SINE Alu 1 299 -11 2051 206 87 44 chr6 44844521 44845248 -144434306 - L1ME LINE L1 -351 5815 4887 2396 88 0 0 chr6 44845248 44845542 -144434012 - AluSc SINE Alu -15 294 1 2051 206 87 44 chr6 44845542 44845819 -144433735 - L1ME LINE L1 -1279 4887 4623 504 154 77 0 chr6 44845851 44845955 -144433599 - L1ME LINE L1 -1508 4638 4527 2229 117 3 0 chr6 44845967 44846267 -144433287 - AluSx SINE Alu -11 301 1 2479 124 95 63 chr6 44847132 44847607 -144431947 + LTR2B LTR ERV1 1 490 0 2804 111 5 2 chr6 44847607 44848005 -144431549 + Harlequin LTR ERV1 1 399 -6497 * 7923 55 44 14 chr6 44847985 44849036 -144430518 + Harlequin LTR ERV1 263 1344 -5552 7338 48 17 10 chr6 44849017 44850020 -144429534 + Harlequin LTR ERV1 1565 2574 -4322 * 5034 47 19 0 chr6 44850019 44850611 -144428943 + Harlequin LTR ERV1 3352 3954 -2942 * 9039 88 5 6 chr6 44850602 44852595 -144426959 + Harlequin LTR ERV1 4251 6896 0 2485 130 78 66 chr6 44852595 44853079 -144426475 + LTR2B LTR ERV1 1 490 0 35 33 0 17 chr6 44853089 44853112 -144426442 + AT_rich Low_complexity Low_complexity 1 23 -36 831 134 0 8 chr6 44853112 44853239 -144426315 + FLAM_C SINE Alu 1 126 -7 35 33 0 17 chr6 44853239 44853275 -144426279 + AT_rich Low_complexity Low_complexity 23 59 0 780 146 32 0 chr6 44853408 44853531 -144426023 + FLAM_C SINE Alu 2 128 -15 365 333 24 6 chr6 44853815 44853980 -144425574 - L1MC/D LINE L1 -2074 5734 5567 290 328 8 0 chr6 44854168 44854287 -144425267 + L1M4 LINE L1 2932 3051 -3095 1478 127 5 32 chr6 44854542 44854678 -144424876 + AluSx SINE Alu 1 130 -182 2514 63 0 7 chr6 44854678 44854979 -144424575 + AluSc SINE Alu 1 299 -10 1478 127 5 32 chr6 44854979 44855063 -144424491 + AluSx SINE Alu 130 215 -97 1113 103 63 0 chr6 44855107 44855244 -144424310 + L1MA2 LINE L1 6119 6271 -33 2479 80 0 3 chr6 44855244 44855556 -144423998 + AluY SINE Alu 1 311 0 1113 103 63 0 chr6 44855556 44855593 -144423961 + L1MA2 LINE L1 6271 6304 0 25 0 0 0 chr6 44855593 44855618 -144423936 + AT_rich Low_complexity Low_complexity 1 25 0 1021 114 47 0 chr6 44855635 44855784 -144423770 + BC200 scRNA scRNA 2 157 -43 519 247 13 46 chr6 44855868 44856050 -144423504 + MER20B DNA MER1_type 27 202 -17 366 192 208 8 chr6 44856648 44856768 -144422786 - HAL1 LINE L1 -2172 335 192 384 281 0 0 chr6 44856784 44856866 -144422688 - HAL1 LINE L1 -2425 82 1 1311 199 36 25 chr6 44856992 44857273 -144422281 - AluJo SINE Alu -22 290 7 278 353 21 55 chr6 44857553 44857791 -144421763 - L2 LINE L2 -182 3090 2861 512 314 84 49 chr6 44857925 44858355 -144421199 - L2 LINE L2 -644 2670 2226 1973 166 0 6 chr6 44858391 44858705 -144420849 + AluSx SINE Alu 1 312 0 980 144 118 43 chr6 44858755 44858942 -144420612 + AluJo SINE Alu 87 287 -25 25 0 0 0 chr6 44858942 44858967 -144420587 + AT_rich Low_complexity Low_complexity 1 25 0 1083 214 285 6 chr6 44859047 44859412 -144420142 - MLT1J LTR MaLR -22 489 23 505 232 120 47 chr6 44859718 44859949 -144419605 + MIR SINE MIR 14 259 -3 300 326 188 18 chr6 44860595 44860813 -144418741 - MIR SINE MIR -1 261 7 184 308 19 0 chr6 44860979 44861031 -144418523 - MIR SINE MIR -133 75 23 638 153 0 0 chr6 44861763 44861861 -144417693 - AluJ/FLAM SINE Alu -213 99 2 273 325 0 0 chr6 44861886 44861966 -144417588 + L2 LINE L2 2969 3048 -224 2082 158 0 0 chr6 44862055 44862366 -144417188 - AluJo SINE Alu -1 311 1 305 242 55 22 chr6 44862697 44862788 -144416766 - MIR SINE MIR 0 262 169 2079 130 3 7 chr6 44863987 44864287 -144415267 + AluSx SINE Alu 1 299 -13 354 274 82 7 chr6 44864849 44864984 -144414570 - MIR3 SINE MIR -31 177 33 189 171 0 0 chr6 44865536 44865571 -144413983 + A-rich Low_complexity Low_complexity 1 35 0 198 0 0 0 chr6 44865707 44865729 -144413825 + (T)n Simple_repeat Simple_repeat 1 22 0 2337 83 50 12 chr6 44867313 44867652 -144411902 - L1PA16 LINE L1 -9 6157 5806 1297 194 129 19 chr6 44868931 44869241 -144410313 - MER2 DNA MER2_type 0 345 2 190 308 108 41 chr6 44870173 44870394 -144409160 + MIR3 SINE MIR 22 260 -2 2222 120 0 0 chr6 44870475 44870776 -144408778 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr6 44871463 44871485 -144408069 + AT_rich Low_complexity Low_complexity 1 22 0 446 233 113 1 chr6 44871850 44872092 -144407462 + LTR33 LTR ERVL 228 521 0 25 90 0 0 chr6 44872687 44872754 -144406800 + AT_rich Low_complexity Low_complexity 1 67 0 21 57 0 0 chr6 44872811 44872846 -144406708 + AT_rich Low_complexity Low_complexity 1 35 0 186 43 0 0 chr6 44874010 44874023 -144405531 + (CA)n Simple_repeat Simple_repeat 1 36 0 186 43 0 0 chr6 44874023 44874046 -144405508 + (CA)n Simple_repeat Simple_repeat 2 24 0 288 268 0 45 chr6 44874373 44874485 -144405069 + CT-rich Low_complexity Low_complexity 2 108 0 653 229 33 73 chr6 44875124 44875399 -144404155 - L2 LINE L2 -19 3294 3031 470 270 221 37 chr6 44877430 44878004 -144401550 - L1MC4a LINE L1 -1875 5933 5254 2271 97 7 3 chr6 44878121 44878421 -144401133 - AluSx SINE Alu -11 301 1 324 137 59 0 chr6 44878476 44878578 -144400976 + (TA)n Simple_repeat Simple_repeat 2 109 0 218 216 20 0 chr6 44878601 44878652 -144400902 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 245 265 8 0 chr6 44878774 44878858 -144400696 - MIR SINE MIR -67 141 71 196 322 0 0 chr6 44879202 44879261 -144400293 - MIR3 SINE MIR -9 199 141 330 300 152 40 chr6 44879503 44879826 -144399728 - L3 LINE CR1 -97 1480 1122 371 286 115 24 chr6 44880906 44881158 -144398396 - L2 LINE L2 -2 3311 3037 189 226 94 0 chr6 44882896 44882949 -144396605 - MIR SINE MIR -6 256 199 270 314 29 20 chr6 44884063 44884165 -144395389 - L2 LINE L2 -10 3262 3160 224 287 148 10 chr6 44885284 44885385 -144394169 - MIR3 SINE MIR -10 198 84 833 204 33 6 chr6 44885702 44885883 -144393671 + MER5A DNA MER1_type 1 186 -3 1300 206 140 43 chr6 44886333 44886682 -144392872 - LTR16C LTR ERVL -40 451 69 1974 148 3 22 chr6 44887386 44887704 -144391850 - AluJo SINE Alu 0 312 1 1310 181 31 59 chr6 44887790 44888111 -144391443 - L1MD2 LINE L1 -9 6350 6039 2470 76 7 0 chr6 44888111 44888415 -144391139 - AluSp SINE Alu -7 306 1 1451 221 100 6 chr6 44888706 44889046 -144390508 - MLT1A2 LTR MaLR 0 374 3 307 333 9 0 chr6 44889153 44889258 -144390296 + MIR3 SINE MIR 78 183 -25 230 287 59 44 chr6 44893215 44893351 -144386203 - MIR SINE MIR -98 164 27 251 212 35 59 chr6 44893994 44894079 -144385475 + Tigger3(Golem) DNA MER2_type 1586 1668 -1361 467 318 15 12 chr6 44894275 44894460 -144385094 - MIR3 SINE MIR -64 144 3 379 219 27 128 chr6 44895421 44895640 -144383914 - L1MC4 LINE L1 -17 8025 7829 879 195 74 25 chr6 44895687 44895945 -144383609 - L1ME2 LINE L1 -12 6152 5879 198 143 29 0 chr6 44897955 44897990 -144381564 + MIR SINE MIR 117 152 -110 1014 153 0 0 chr6 44899983 44900140 -144379414 + FRAM SINE Alu 18 174 -2 388 214 97 45 chr6 44900587 44900741 -144378813 + L1MC4a LINE L1 6013 6174 -1634 309 289 61 9 chr6 44900816 44900930 -144378624 - MIR SINE MIR -6 256 137 1267 162 108 61 chr6 44900952 44901084 -144378470 + AluJo SINE Alu 2 126 -186 1939 158 0 10 chr6 44901084 44901394 -144378160 + AluJb SINE Alu 1 307 -5 1267 162 108 61 chr6 44901394 44901557 -144377997 + AluJo SINE Alu 126 311 -1 452 292 25 0 chr6 44902528 44902648 -144376906 - L2 LINE L2 -2 3311 3189 453 263 97 11 chr6 44904069 44904244 -144375310 + MIR SINE MIR 9 198 -64 2205 109 0 0 chr6 44904252 44904546 -144375008 - AluSg SINE Alu -16 294 1 2368 77 0 0 chr6 44905195 44905506 -144374048 - AluY SINE Alu 0 311 1 208 139 28 0 chr6 44907067 44907103 -144372451 + G-rich Low_complexity Low_complexity 4 40 0 205 250 0 44 chr6 44907615 44907683 -144371871 + CT-rich Low_complexity Low_complexity 3 67 0 713 299 70 12 chr6 44909945 44910189 -144369365 - MIR SINE MIR -1 261 4 668 298 108 19 chr6 44911623 44911881 -144367673 - L3 LINE CR1 -15 1562 1282 242 333 64 12 chr6 44912352 44912523 -144367031 + L1ME4a LINE L1 5764 5943 -178 297 259 167 15 chr6 44914913 44915066 -144364488 + MIR SINE MIR 3 137 -71 396 181 23 105 chr6 44916727 44916805 -144362749 + L1ME4a LINE L1 5999 6063 -58 2137 108 0 13 chr6 44916805 44917112 -144362442 - AluSx SINE Alu -9 303 1 396 181 23 105 chr6 44917112 44917166 -144362388 + L1ME4a LINE L1 6063 6120 -1 404 305 86 16 chr6 44918277 44918464 -144361090 + MIR SINE MIR 48 247 -15 1427 169 36 75 chr6 44918464 44918665 -144360889 - AluJb SINE Alu -17 295 109 2195 103 10 3 chr6 44918665 44918966 -144360588 + AluSx SINE Alu 3 305 -7 1427 169 36 75 chr6 44918966 44919071 -144360483 - AluJb SINE Alu -203 109 1 714 202 5 61 chr6 44919236 44919398 -144360156 + MER4D LTR ERV1 390 541 -362 2192 95 23 0 chr6 44919398 44919702 -144359852 - AluY SINE Alu 0 311 1 714 202 5 61 chr6 44919702 44919737 -144359817 + MER4D LTR ERV1 541 576 -327 180 0 0 0 chr6 44919745 44919765 -144359789 + (TG)n Simple_repeat Simple_repeat 1 20 0 875 159 5 91 chr6 44919968 44920176 -144359378 + MER4E LTR ERV1 458 647 -132 * 2301 137 20 0 chr6 44920174 44920567 -144358987 - MER4D LTR ERV1 -502 401 1 372 311 58 23 chr6 44921849 44922070 -144357484 + MIR SINE MIR 15 246 -16 209 254 34 0 chr6 44922239 44922298 -144357256 + MIR SINE MIR 15 75 -187 187 222 0 22 chr6 44922609 44922654 -144356900 + MIR SINE MIR 211 254 -8 1559 153 24 4 chr6 44923235 44923483 -144356071 + AluJb SINE Alu 1 253 -59 228 280 108 6 chr6 44923983 44924140 -144355414 + L1MC4a LINE L1 4886 5058 -1088 2401 73 3 0 chr6 44924329 44924631 -144354923 - AluSg SINE Alu -7 303 1 206 216 0 0 chr6 44924665 44924702 -144354852 + (CA)n Simple_repeat Simple_repeat 2 38 0 1490 176 8 19 chr6 44924722 44924983 -144354571 - AluJb SINE Alu -54 258 1 2251 60 39 0 chr6 44925062 44925343 -144354211 + AluY SINE Alu 3 294 -17 377 222 65 37 chr6 44925425 44925533 -144354021 + MIR SINE MIR 49 159 -103 2108 92 3 7 chr6 44925535 44925848 -144353706 - AluSx SINE Alu 0 312 1 422 312 91 5 chr6 44926166 44926387 -144353167 + L1MC4a LINE L1 5690 5929 -1879 507 301 80 24 chr6 44926589 44926802 -144352752 + MIR SINE MIR 13 237 -25 288 314 47 0 chr6 44929418 44929504 -144350050 - MIR SINE MIR -60 202 113 317 309 67 0 chr6 44930824 44930973 -144348581 - L1MEd LINE L1 -5901 218 60 192 341 44 0 chr6 44931014 44931105 -144348449 + L2 LINE L2 2534 2628 -686 180 304 0 0 chr6 44933266 44933312 -144346242 + L2 LINE L2 3226 3271 -1 734 204 8 0 chr6 44933412 44933544 -144346010 - FLAM_A SINE Alu 0 133 1 327 277 123 8 chr6 44934031 44934161 -144345393 + MIR SINE MIR 56 200 -62 233 385 60 0 chr6 44941300 44941417 -144338137 - MIR SINE MIR -62 146 23 244 313 20 47 chr6 44942162 44942477 -144337077 + L1P LINE L1 4890 5199 -947 275 193 18 0 chr6 44942559 44942616 -144336938 + L1MDa LINE L1 32 89 -6451 1284 225 214 10 chr6 44942620 44943199 -144336355 + L1MDa LINE L1 255 1130 -5410 1084 154 0 6 chr6 44943202 44943377 -144336177 + AluSg/x SINE Alu 126 299 -11 1634 165 118 20 chr6 44943380 44943777 -144335777 + L1MDa LINE L1 1134 1589 -4951 1943 149 3 16 chr6 44943777 44944092 -144335462 + AluJo SINE Alu 1 311 -1 1634 165 118 20 chr6 44944092 44944184 -144335370 + L1MDa LINE L1 1589 1671 -4869 1894 137 55 0 chr6 44944209 44944530 -144335024 + AluSx SINE Alu 1 337 0 2018 127 45 45 chr6 44944546 44944972 -144334582 + MER65A LTR ERV1 20 445 0 6426 184 87 73 chr6 44944979 44946170 -144333384 + MER65A-int LTR ERV1 12 1184 -3687 2028 107 0 0 chr6 44946170 44946440 -144333114 + AluSx SINE Alu 26 295 -17 6426 184 87 73 chr6 44946440 44946663 -144332891 + MER65A-int LTR ERV1 1184 1402 -3469 2536 175 118 83 chr6 44946663 44947617 -144331937 + LTR57-int LTR ERVL 552 1539 -3804 729 185 15 0 chr6 44947618 44947748 -144331806 - FLAM_A SINE Alu -1 132 1 6426 184 87 73 chr6 44947748 44948174 -144331380 + MER65A-int LTR ERV1 1401 2508 -2363 1792 181 0 7 chr6 44948174 44948484 -144331070 + AluJb SINE Alu 1 308 -4 2226 202 124 84 chr6 44948487 44949308 -144330246 + MER65A-int LTR ERV1 3325 4112 -2714 2009 116 20 0 chr6 44949308 44949602 -144329952 - AluSx SINE Alu -10 302 3 2226 202 124 84 chr6 44949602 44949951 -144329603 + MER65A-int LTR ERV1 4112 4446 -2380 2186 92 3 0 chr6 44949951 44950243 -144329311 - AluSq SINE Alu -20 293 1 2226 202 124 84 chr6 44950243 44950308 -144329246 + MER65A-int LTR ERV1 4446 5589 -1237 1388 228 90 88 chr6 44950385 44950421 -144329133 + MER65A-int LTR ERV1 3605 3639 -1232 1853 138 10 3 chr6 44950421 44950712 -144328842 + AluJo SINE Alu 1 293 -19 2018 112 7 10 chr6 44950712 44950847 -144328707 + AluY SINE Alu 1 135 -176 2100 91 14 0 chr6 44950847 44951143 -144328411 + AluSq SINE Alu 1 300 -13 2018 112 7 10 chr6 44951143 44951312 -144328242 + AluY SINE Alu 135 304 -7 1388 228 90 88 chr6 44951312 44951761 -144327793 + MER65A-int LTR ERV1 3638 4092 -779 * 1894 188 28 56 chr6 44951728 44952196 -144327358 + MER65A-int LTR ERV1 4397 4851 -20 4537 145 62 31 chr6 44952203 44952216 -144327338 + L1MDa LINE L1 1649 1660 -4880 2387 121 59 48 chr6 44952216 44952486 -144327068 + MER65A LTR ERV1 1 279 -166 1760 167 6 6 chr6 44952486 44952798 -144326756 - AluJo SINE Alu 0 312 1 2387 121 59 48 chr6 44952798 44952967 -144326587 + MER65A LTR ERV1 279 445 0 4537 145 62 31 chr6 44952967 44953295 -144326259 + L1MDa LINE L1 1660 1976 -4564 2048 120 0 26 chr6 44953295 44953604 -144325950 - AluSx SINE Alu -9 303 3 4537 145 62 31 chr6 44953604 44954160 -144325394 + L1MDa LINE L1 1976 2591 -3949 1891 153 0 0 chr6 44954160 44954455 -144325099 + AluSx SINE Alu 1 295 -17 4537 145 62 31 chr6 44954455 44954593 -144324961 + L1MDa LINE L1 2591 2723 -3817 782 144 0 144 chr6 44954597 44954784 -144324770 - FRAM SINE Alu -18 158 1 736 196 45 15 chr6 44954784 44954983 -144324571 + L1MDa LINE L1 2720 2924 -3616 576 160 110 0 chr6 44954984 44955084 -144324470 + MLT1B LTR MaLR 1 111 -279 954 44 0 0 chr6 44955087 44955201 -144324353 + LTR22A LTR ERVK 4 117 -341 7823 113 53 7 chr6 44955203 44956361 -144323193 - HERVK22 LTR ERVK -5626 1211 1 3258 64 44 33 chr6 44956361 44956494 -144323060 - LTR22A LTR ERVK 0 458 328 2003 138 0 7 chr6 44956494 44956799 -144322755 - AluSg SINE Alu -7 303 1 3258 64 44 33 chr6 44956799 44957118 -144322436 - LTR22A LTR ERVK -130 328 1 860 203 30 25 chr6 44957230 44957427 -144322127 + MLT1B LTR MaLR 193 390 0 2430 202 32 35 chr6 44957427 44957679 -144321875 + L1MDa LINE L1 2921 3172 -3368 1858 103 65 34 chr6 44957679 44957971 -144321583 + AluSx SINE Alu 1 301 -11 2430 202 32 35 chr6 44957971 44958382 -144321172 + L1MDa LINE L1 3172 3582 -2958 1627 101 0 0 chr6 44958384 44958602 -144320952 + AluSx SINE Alu 1 218 -94 2217 73 6 19 chr6 44959298 44959612 -144319942 + AluSg SINE Alu 1 310 0 611 178 104 6 chr6 44959990 44960153 -144319401 - Charlie2 DNA MER1_type -2 2860 2682 922 83 8 23 chr6 44960153 44960286 -144319268 - AluSg/x SINE Alu -18 292 162 379 294 200 34 chr6 44960334 44960673 -144318881 - L1MCa LINE L1 -1341 3347 880 1927 78 0 0 chr6 44960961 44961205 -144318349 + AluSg SINE Alu 59 302 -8 2362 75 0 0 chr6 44961218 44961511 -144318043 + AluSg SINE Alu 1 293 -17 957 167 0 23 chr6 44961511 44961685 -144317869 + AluJb SINE Alu 134 303 -9 2401 64 0 6 chr6 44961755 44962068 -144317486 + AluY SINE Alu 1 311 0 231 111 156 0 chr6 44962211 44962256 -144317298 + MIR SINE MIR 95 146 -62 975 261 78 66 chr6 44963023 44963460 -144316094 - LTR67 LTR ERVL -4 553 112 734 197 46 20 chr6 44963460 44963612 -144315942 + AluJb SINE Alu 156 311 -1 279 355 30 10 chr6 44963650 44963850 -144315704 + L3 LINE CR1 1179 1382 -195 2067 114 7 0 chr6 44963866 44964174 -144315380 + AluSx SINE Alu 1 310 -2 266 238 24 24 chr6 44964212 44964296 -144315258 - L1ME4a LINE L1 -65 6056 5973 1917 129 6 10 chr6 44964296 44964607 -144314947 - AluSx SINE Alu 0 312 3 1106 147 0 0 chr6 44964609 44964786 -144314768 - AluSc SINE Alu -14 295 119 2768 119 9 14 chr6 44964910 44965330 -144314224 - LTR51 LTR ERV1 0 671 254 821 118 8 24 chr6 44965331 44965458 -144314096 + AluJo SINE Alu 10 134 -178 2327 87 3 0 chr6 44965478 44965787 -144313767 + AluSp SINE Alu 1 310 -3 1321 158 47 24 chr6 44965787 44966040 -144313514 - LTR51 LTR ERV1 -412 259 1 749 282 12 2 chr6 44966048 44966276 -144313278 - L1ME4a LINE L1 -287 5834 5603 24 67 0 0 chr6 44966284 44966329 -144313225 + AT_rich Low_complexity Low_complexity 1 45 0 1584 123 8 4 chr6 44966390 44966626 -144312928 - AluY SINE Alu -17 294 58 2219 87 11 0 chr6 44966670 44966957 -144312597 + AluY SINE Alu 1 290 -21 1071 94 0 0 chr6 44966967 44967105 -144312449 + AluSq/x SINE Alu 1 138 -175 32836 82 8 11 chr6 44967107 44971579 -144307975 + L1P LINE L1 16 4476 -1670 1187 93 12 0 chr6 44971579 44971741 -144307813 - AluSg/x SINE Alu -15 295 132 11609 45 23 0 chr6 44971741 44973941 -144305613 - L1PA6 LINE L1 -2 6152 3920 485 108 0 0 chr6 44973942 44974007 -144305547 - MER49 LTR ERV1 -130 793 729 1045 52 0 22 chr6 44974007 44974141 -144305413 - AluY SINE Alu -171 140 10 954 121 0 0 chr6 44974141 44974282 -144305272 - FLAM_C SINE Alu -1 142 2 2129 125 13 3 chr6 44974284 44974597 -144304957 - MER49 LTR ERV1 -607 316 1 6703 32 13 194 chr6 44974870 44976136 -144303418 + SVA Other Other 11 1047 -339 218 328 0 0 chr6 44976493 44976551 -144303003 + polypurine Low_complexity Low_complexity 2 59 0 2084 116 3 0 chr6 44976563 44976866 -144302688 + AluSx SINE Alu 2 305 -7 465 211 21 0 chr6 44977353 44977448 -144302106 + MIR3 SINE MIR 96 192 -16 24 0 0 0 chr6 44977680 44977704 -144301850 + GC_rich Low_complexity Low_complexity 1 24 0 1342 164 66 36 chr6 44980423 44980697 -144298857 - AluJo SINE Alu -7 305 24 2384 76 0 10 chr6 44981007 44981321 -144298233 - AluY SINE Alu 0 311 1 453 216 135 0 chr6 44982529 44982640 -144296914 + L2 LINE L2 3188 3313 0 180 0 0 0 chr6 44982727 44982747 -144296807 + (TA)n Simple_repeat Simple_repeat 2 21 0 2239 95 0 0 chr6 44982747 44983051 -144296503 - AluSq SINE Alu -9 304 1 2216 110 0 0 chr6 44983051 44983350 -144296204 - AluSq SINE Alu -14 299 1 330 191 155 0 chr6 44983353 44983437 -144296117 - L2 LINE L2 -12 3301 3205 2572 36 0 0 chr6 44984165 44984467 -144295087 - AluY SINE Alu -9 302 1 1383 117 45 9 chr6 44984510 44984732 -144294822 + MER30 DNA MER1_type 1 230 0 453 198 37 0 chr6 44984740 44984821 -144294733 - AluJo SINE Alu -111 201 118 2247 118 0 0 chr6 44984871 44985184 -144294370 - AluSq SINE Alu 0 313 1 3105 172 12 0 chr6 44985184 44985755 -144293799 - L1 LINE L1 -779 5367 4790 2132 106 0 19 chr6 44985755 44986067 -144293487 - AluSx SINE Alu -4 308 3 366 83 21 188 chr6 44986112 44986156 -144293398 - Charlie1 DNA MER1_type 0 2761 2740 2374 75 0 0 chr6 44986156 44986462 -144293092 - AluY SINE Alu 0 311 6 366 83 21 188 chr6 44986462 44986513 -144293041 - Charlie1 DNA MER1_type -21 2740 2682 826 140 21 14 chr6 44986546 44986689 -144292865 - Charlie1 DNA MER1_type -714 2047 1904 1615 176 0 29 chr6 44986692 44987004 -144292550 - AluJo SINE Alu -9 303 1 1535 184 10 19 chr6 44987004 44987313 -144292241 - AluJo SINE Alu -6 306 1 2070 96 0 7 chr6 44987320 44987626 -144291928 - AluSg SINE Alu 0 304 1 328 178 89 10 chr6 44987626 44987727 -144291827 - Charlie1 DNA MER1_type -1101 1660 1552 * 1052 235 110 64 chr6 44987717 44988172 -144291382 - MLT1F LTR MaLR -65 477 2 270 273 0 0 chr6 44988445 44988511 -144291043 - L3b LINE CR1 -189 1394 1329 1302 148 106 84 chr6 44989038 44989094 -144290460 + MER47A DNA MER2_type 1 54 -2269 2454 56 3 0 chr6 44989094 44989396 -144290158 + AluY SINE Alu 1 303 -8 1302 148 106 84 chr6 44989396 44989444 -144290110 + MER47A DNA MER2_type 54 99 -2224 2038 106 17 0 chr6 44989444 44989737 -144289817 - AluSq SINE Alu -11 302 5 1302 148 106 84 chr6 44989737 44989989 -144289565 + MER47A DNA MER2_type 99 366 0 755 157 0 0 chr6 44990365 44990480 -144289074 + AluSx SINE Alu 56 170 -142 1525 149 0 0 chr6 44990486 44990721 -144288833 + AluJb SINE Alu 75 309 -3 2470 64 0 0 chr6 44990742 44991053 -144288501 - AluY SINE Alu 0 311 1 362 47 0 0 chr6 44991078 44991121 -144288433 - MER57B LTR ERV1 -66 368 326 1193 174 18 18 chr6 44991699 44991917 -144287637 - MER20 DNA MER1_type -1 218 1 2116 111 7 0 chr6 44992681 44992979 -144286575 - AluSx SINE Alu -12 300 1 2261 182 46 40 chr6 44993125 44993626 -144285928 + MLT1D LTR MaLR 2 505 0 958 259 179 10 chr6 44993937 44994351 -144285203 - L2 LINE L2 -1 3312 2829 837 231 82 0 chr6 44994878 44995073 -144284481 - MIR SINE MIR -40 222 12 415 249 78 28 chr6 44995563 44995728 -144283826 - MIR SINE MIR -63 145 9 259 188 297 50 chr6 44996323 44996424 -144283130 + MIR SINE MIR 134 259 -3 777 167 0 47 chr6 44996508 44996658 -144282896 + FLAM_C SINE Alu 1 143 0 378 333 98 22 chr6 44997130 44997355 -144282199 - L1ME4a LINE L1 -6 6115 5874 298 163 43 33 chr6 44998962 44999054 -144280500 - L1MB7 LINE L1 -2 6176 6084 1860 178 134 10 chr6 44999074 44999574 -144279980 - L1MB7 LINE L1 -25 6159 5598 2000 104 0 19 chr6 44999574 44999843 -144279711 - AluSx SINE Alu -10 302 39 2387 74 23 3 chr6 44999852 45000151 -144279403 - AluSc SINE Alu -4 305 1 433 189 167 77 chr6 45000189 45000267 -144279287 - L1MC4a LINE L1 -1899 5909 5839 2495 67 3 29 chr6 45000267 45000582 -144278972 - AluY SINE Alu -4 307 1 433 189 167 77 chr6 45000582 45000638 -144278916 - L1MC4a LINE L1 -1969 5839 5789 2181 132 3 0 chr6 45000638 45000933 -144278621 - AluSx SINE Alu -16 296 1 433 189 167 77 chr6 45000933 45001019 -144278535 - L1MC4a LINE L1 -2019 5789 5668 541 99 129 5 chr6 45001253 45001349 -144278205 - MLT1F LTR MaLR 0 530 447 282 292 0 14 chr6 45001332 45001404 -144278150 - MLT1F LTR MaLR -465 77 7 * 2136 133 7 0 chr6 45001698 45001992 -144277562 - AluSx SINE Alu -16 296 1 212 341 134 6 chr6 45001993 45002172 -144277382 - MIR SINE MIR -43 219 18 277 217 109 11 chr6 45002592 45002684 -144276870 - MIR SINE MIR -81 181 81 859 242 148 14 chr6 45002684 45003110 -144276444 - MLT1H LTR MaLR 0 549 5 377 286 51 34 chr6 45003557 45003732 -144275822 + MER5B DNA MER1_type 1 178 0 244 184 53 61 chr6 45004252 45004366 -144275188 - L1ME4a LINE L1 -33 6088 5976 1358 233 24 78 chr6 45004431 45004928 -144274626 - L1MB7 LINE L1 -9 6175 5706 278 311 115 33 chr6 45004947 45005069 -144274485 + L2 LINE L2 3159 3290 -23 329 206 58 31 chr6 45005110 45005213 -144274341 - L1MB7 LINE L1 -520 5601 5510 204 318 71 12 chr6 45006292 45006377 -144273177 - L2 LINE L2 -21 3251 3162 378 216 20 39 chr6 45006803 45006905 -144272649 + MLT1C LTR MaLR 1 100 -367 553 259 195 0 chr6 45007120 45007305 -144272249 + MIR SINE MIR 9 229 -33 2365 100 0 3 chr6 45007312 45007621 -144271933 - AluSx SINE Alu -4 308 1 796 256 40 28 chr6 45007869 45008023 -144271531 + MIR SINE MIR 6 166 -96 1608 139 31 90 chr6 45008023 45008411 -144271143 - MLT1A1 LTR MaLR 0 365 1 796 256 40 28 chr6 45008411 45008506 -144271048 + MIR SINE MIR 166 258 -4 1903 176 3 10 chr6 45008800 45009112 -144270442 - AluJb SINE Alu -2 310 1 2640 58 0 3 chr6 45009518 45009827 -144269727 + AluY SINE Alu 1 308 -3 212 332 105 22 chr6 45009865 45010094 -144269460 + L2 LINE L2 2289 2536 -778 301 238 200 0 chr6 45010161 45010266 -144269288 - L1MEd LINE L1 -3873 2256 2131 2480 88 7 0 chr6 45010352 45010658 -144268896 - AluSx SINE Alu -4 308 1 1769 182 3 13 chr6 45010693 45010995 -144268559 - AluJo SINE Alu -13 299 1 376 160 130 0 chr6 45011256 45011356 -144268198 - L1MD3 LINE L1 -5 7990 7878 394 278 101 56 chr6 45011356 45011554 -144268000 - L1MEd LINE L1 -4902 1217 1011 271 259 90 37 chr6 45011554 45011743 -144267811 - L1MEd LINE L1 -5325 794 596 2446 81 0 0 chr6 45011882 45012179 -144267375 + AluY SINE Alu 2 298 -13 443 311 59 0 chr6 45012645 45012780 -144266774 + MIR SINE MIR 1 143 -119 2344 90 0 0 chr6 45013014 45013304 -144266250 - AluSc SINE Alu -19 290 1 2357 100 7 0 chr6 45014235 45014544 -144265010 - AluSq SINE Alu -2 311 1 236 263 59 102 chr6 45014615 45014733 -144264821 - L2 LINE L2 -19 3294 3182 325 381 78 19 chr6 45014844 45015114 -144264440 - L3 LINE CR1 -1269 308 23 501 270 85 30 chr6 45015329 45015529 -144264025 - MLT1J LTR MaLR -102 409 199 2174 120 3 19 chr6 45015619 45015936 -144263618 - AluJb SINE Alu 0 312 1 180 353 74 25 chr6 45015936 45016058 -144263496 + MIR SINE MIR 122 249 -13 687 217 210 66 chr6 45016517 45016959 -144262595 - MLT1J LTR MaLR -4 507 2 327 261 101 0 chr6 45017907 45018026 -144261528 + MIR SINE MIR 84 214 -48 240 143 0 0 chr6 45018032 45018074 -144261480 + (TTA)n Simple_repeat Simple_repeat 1 42 0 3327 89 19 115 chr6 45018465 45019749 -144259805 + SVA Other Other 322 868 -520 7219 58 8 43 chr6 45019814 45020803 -144258751 + SVA Other Other 433 1386 0 207 0 0 0 chr6 45021458 45021481 -144258073 + (T)n Simple_repeat Simple_repeat 1 23 0 1138 168 0 0 chr6 45021487 45021654 -144257900 + FRAM SINE Alu 1 167 -9 300 286 32 84 chr6 45022713 45022856 -144256698 - L1MC4a LINE L1 -1851 5957 5821 2359 117 0 0 chr6 45022856 45023164 -144256390 - AluSx SINE Alu -4 308 1 2129 122 7 0 chr6 45023574 45023862 -144255692 + AluSx SINE Alu 1 290 -22 196 286 118 17 chr6 45023994 45024113 -144255441 - L2 LINE L2 -2 3270 3140 273 163 0 0 chr6 45024121 45024170 -144255384 + L1ME3 LINE L1 5933 5981 -181 912 143 6 56 chr6 45024174 45024335 -144255219 + FRAM SINE Alu 1 153 -23 334 221 23 161 chr6 45024339 45024441 -144255113 + L1ME3 LINE L1 5975 6033 -129 2451 92 0 3 chr6 45024441 45024755 -144254799 - AluSq SINE Alu 0 313 1 334 221 23 161 chr6 45024755 45024869 -144254685 + L1ME3 LINE L1 6033 6161 -1 210 143 0 0 chr6 45025816 45025851 -144253703 + (A)n Simple_repeat Simple_repeat 1 35 0 1774 171 6 19 chr6 45025883 45026198 -144253356 + AluJo SINE Alu 1 311 -1 416 209 0 0 chr6 45026418 45026509 -144253045 - L1MC4 LINE L1 -26 8016 7926 * 498 270 35 13 chr6 45026506 45026699 -144252855 - L1MC4 LINE L1 -359 7636 7347 182 373 0 0 chr6 45026851 45026926 -144252628 + MIR SINE MIR 33 107 -101 476 288 14 7 chr6 45026939 45027078 -144252476 - MIR SINE MIR -121 141 2 2162 125 0 39 chr6 45029631 45029942 -144249612 + AluSx SINE Alu 1 299 -13 400 297 27 21 chr6 45030014 45030209 -144249345 - MIR SINE MIR -56 206 11 389 361 30 6 chr6 45030329 45030495 -144249059 + L3 LINE CR1 656 825 -752 185 246 82 0 chr6 45030681 45030742 -144248812 + L3 LINE CR1 1156 1221 -356 630 234 153 5 chr6 45030894 45031103 -144248451 + MIR SINE MIR 2 241 -21 2598 74 0 0 chr6 45031335 45031646 -144247908 - AluY SINE Alu 0 311 1 25 31 0 0 chr6 45031659 45031691 -144247863 + AT_rich Low_complexity Low_complexity 1 32 0 2289 112 0 0 chr6 45031691 45031986 -144247568 + AluY SINE Alu 1 295 -16 499 132 0 0 chr6 45031987 45032063 -144247491 - FLAM_A SINE Alu -27 115 40 1900 248 181 25 chr6 45032811 45033935 -144245619 - L2 LINE L2 -83 3230 1939 1987 142 14 3 chr6 45033974 45034263 -144245291 + AluSx SINE Alu 1 292 -20 2313 112 10 0 chr6 45034263 45034566 -144244988 + AluSx SINE Alu 1 306 -6 1748 158 24 31 chr6 45034566 45034857 -144244697 + AluSx SINE Alu 1 289 -23 730 204 12 18 chr6 45034949 45035116 -144244438 - L1ME4a LINE L1 -263 5858 5693 309 98 0 0 chr6 45035571 45035612 -144243942 - tRNA-Lys-AAG tRNA tRNA -34 42 2 2233 132 7 0 chr6 45035660 45035964 -144243590 + AluJb SINE Alu 1 306 -6 224 202 64 75 chr6 45036226 45036320 -144243234 - MIR3 SINE MIR -8 200 108 257 360 60 5 chr6 45036477 45036677 -144242877 + L2 LINE L2 2605 2815 -499 253 176 0 59 chr6 45036909 45036960 -144242594 + L2 LINE L2 3266 3313 0 467 296 30 12 chr6 45037266 45037435 -144242119 - L1ME4a LINE L1 -10 6111 5940 251 238 95 9 chr6 45038403 45038508 -144241046 - MIR SINE MIR -13 249 136 338 263 0 12 chr6 45038689 45038769 -144240785 - L2 LINE L2 0 3313 3235 808 228 74 0 chr6 45039307 45039496 -144240058 + MIR SINE MIR 6 208 -54 423 0 0 0 chr6 45040096 45040143 -144239411 + (TG)n Simple_repeat Simple_repeat 2 48 0 1834 134 73 0 chr6 45040202 45040477 -144239077 - AluSx SINE Alu -13 299 5 2316 98 3 0 chr6 45040775 45041070 -144238484 - AluSx SINE Alu -14 298 3 1958 147 17 0 chr6 45041072 45041365 -144238189 - AluSx SINE Alu -14 298 1 788 120 3 14 chr6 45042694 45042859 -144236695 + L1PA3 LINE L1 6032 6168 0 21 36 0 0 chr6 45042899 45042927 -144236627 + AT_rich Low_complexity Low_complexity 1 28 0 387 317 91 41 chr6 45043146 45043565 -144235989 - MLT1J LTR MaLR -71 440 1 249 267 99 37 chr6 45043734 45043895 -144235659 - Charlie8 DNA MER1_type -2132 285 115 860 204 158 11 chr6 45043914 45044174 -144235380 - L1MD3 LINE L1 -15 7980 7683 29 0 0 0 chr6 45044336 45044365 -144235189 + AT_rich Low_complexity Low_complexity 1 29 0 1867 171 10 3 chr6 45044365 45044674 -144234880 + AluJo SINE Alu 1 311 -1 1035 140 17 0 chr6 45044709 45044888 -144234666 - L1PA13 LINE L1 -14 6149 5968 675 179 26 39 chr6 45044946 45045102 -144234452 + MER5B DNA MER1_type 11 164 -14 220 325 47 24 chr6 45045121 45045290 -144234264 - L2 LINE L2 -831 2483 2311 280 232 139 88 chr6 45046454 45046648 -144232906 + MIR SINE MIR 2 205 -57 2262 121 0 7 chr6 45047068 45047373 -144232181 - AluSx SINE Alu -9 303 1 2225 104 17 7 chr6 45048824 45049121 -144230433 - AluSx SINE Alu -12 300 1 596 311 62 9 chr6 45049126 45049351 -144230203 + L1MC4a LINE L1 5603 5839 -1969 235 293 35 35 chr6 45049652 45049768 -144229786 + MIR SINE MIR 23 138 -70 326 288 54 0 chr6 45050270 45050381 -144229173 - L2 LINE L2 -6 3266 3150 1973 137 54 61 chr6 45050887 45050921 -144228633 - MLT2D LTR ERVL 0 414 381 225 0 0 0 chr6 45050921 45050946 -144228608 + (TG)n Simple_repeat Simple_repeat 2 26 0 1973 137 54 61 chr6 45050946 45051242 -144228312 - MLT2D LTR ERVL -33 381 85 2247 75 39 13 chr6 45051242 45051547 -144228007 + AluSq SINE Alu 1 313 0 1973 137 54 61 chr6 45051547 45051625 -144227929 - MLT2D LTR ERVL -329 85 8 279 226 38 75 chr6 45051638 45051744 -144227810 + MIR SINE MIR 95 196 -66 207 214 0 0 chr6 45052006 45052048 -144227506 + T-rich Low_complexity Low_complexity 1 42 0 1776 130 0 83 chr6 45052093 45052446 -144227108 - AluJb SINE Alu 0 312 1 1304 170 130 30 chr6 45052446 45052716 -144226838 - AluJo SINE Alu -5 297 1 1935 70 0 27 chr6 45052716 45052972 -144226582 - AluSc SINE Alu -60 249 1 286 257 128 46 chr6 45053654 45053763 -144225791 - L2 LINE L2 -87 3226 3109 299 278 67 0 chr6 45055102 45055192 -144224362 - MIR SINE MIR -107 155 60 2320 101 0 0 chr6 45055962 45056269 -144223285 - AluSx SINE Alu -5 307 1 1083 82 0 0 chr6 45056270 45056405 -144223149 - AluSq/x SINE Alu -177 135 1 2171 82 0 7 chr6 45056453 45056779 -144222775 - AluSq SINE Alu 0 327 4 217 217 43 0 chr6 45057197 45057243 -144222311 + MIR SINE MIR 212 259 -3 382 229 229 34 chr6 45057964 45058078 -144221476 - MIR SINE MIR -2 260 170 1965 122 6 42 chr6 45058078 45058389 -144221165 + AluJo SINE Alu 1 300 -12 2265 92 3 16 chr6 45058389 45058704 -144220850 + AluSx SINE Alu 1 311 -1 382 229 229 34 chr6 45058704 45058793 -144220761 - MIR SINE MIR -91 171 16 197 229 104 0 chr6 45058835 45058883 -144220671 - L2 LINE L2 -58 3255 3203 2272 88 0 3 chr6 45060133 45060430 -144219124 + AluSx SINE Alu 1 296 -16 553 279 209 0 chr6 45060532 45060747 -144218807 - MIR SINE MIR -1 261 2 313 362 0 7 chr6 45061384 45061536 -144218018 + CT-rich Low_complexity Low_complexity 1 151 0 439 279 58 6 chr6 45063805 45063977 -144215577 - LTR33A LTR ERVL -13 510 330 273 343 145 0 chr6 45064249 45064415 -144215139 - LTR50 LTR ERVL -605 190 1 2533 73 14 4 chr6 45064691 45065261 -144214293 - LTR10E LTR ERV1 0 633 1 422 249 122 22 chr6 45065518 45065699 -144213855 - MIR SINE MIR -49 213 15 225 196 0 0 chr6 45065817 45065873 -144213681 + L1MC3 LINE L1 7722 7777 -8 2438 66 0 0 chr6 45065881 45066186 -144213368 + AluY SINE Alu 1 305 -6 1837 152 30 3 chr6 45066213 45066516 -144213038 + AluSx SINE Alu 1 311 -1 2225 108 0 0 chr6 45066519 45066826 -144212728 - AluSx SINE Alu -5 307 1 2186 105 3 3 chr6 45066963 45067268 -144212286 + AluSc SINE Alu 1 305 -4 336 279 59 29 chr6 45067304 45067440 -144212114 + L1ME LINE L1 5494 5633 -537 864 249 144 88 chr6 45067470 45067879 -144211675 + LTR16A LTR ERVL 19 450 0 1801 110 3 43 chr6 45067979 45068099 -144211455 + AluJo SINE Alu 6 129 -183 1872 113 3 57 chr6 45068099 45068429 -144211125 - AluSq SINE Alu 0 314 1 1801 110 3 43 chr6 45068429 45068606 -144210948 + AluJo SINE Alu 129 292 -20 772 226 99 69 chr6 45068714 45068746 -144210808 + L1MC/D LINE L1 5254 5284 -2524 2337 96 0 0 chr6 45068746 45069058 -144210496 + AluSq SINE Alu 1 312 -1 772 226 99 69 chr6 45069058 45069150 -144210404 + L1MC/D LINE L1 5284 5372 -2436 2273 96 3 6 chr6 45069150 45069464 -144210090 + AluSq SINE Alu 1 313 0 772 226 99 69 chr6 45069464 45069518 -144210036 + L1MC/D LINE L1 5372 5423 -2385 1760 168 10 0 chr6 45069518 45069816 -144209738 - AluJo SINE Alu -11 301 1 772 226 99 69 chr6 45069816 45069997 -144209557 + L1MC/D LINE L1 5423 5626 -2182 240 256 15 131 chr6 45070221 45070358 -144209196 - MIR3 SINE MIR -3 205 85 250 257 0 14 chr6 45070407 45070477 -144209077 - MIR SINE MIR -23 239 171 270 326 62 0 chr6 45070479 45070623 -144208931 - LTR67 LTR ERVL -2 555 403 272 260 87 19 chr6 45072063 45072167 -144207387 - MIR3 SINE MIR -22 186 76 257 270 40 0 chr6 45072265 45072339 -144207215 + L2 LINE L2 3201 3277 -36 1996 117 31 0 chr6 45072645 45072936 -144206618 - AluSx SINE Alu -12 300 1 296 183 113 0 chr6 45073572 45073643 -144205911 + MER103 DNA DNA 15 93 -73 1409 187 4 0 chr6 45073692 45073933 -144205621 + AluJb SINE Alu 1 242 -70 330 111 0 19 chr6 45073997 45074051 -144205503 + MER50 LTR ERV1 502 554 -180 2264 106 6 0 chr6 45074094 45074405 -144205149 - AluSq SINE Alu 0 313 1 368 254 42 0 chr6 45074868 45074986 -144204568 - Charlie2 DNA MER1_type -8 2854 2732 2372 89 0 0 chr6 45074986 45075289 -144204265 - AluSg SINE Alu -7 303 1 1755 143 59 3 chr6 45075502 45075788 -144203766 - AluJo SINE Alu -10 302 1 2259 77 3 13 chr6 45075836 45076134 -144203420 - AluSp SINE Alu -18 295 1 569 146 0 0 chr6 45076161 45076243 -144203311 - AluSp/q SINE Alu -15 298 217 501 192 10 10 chr6 45076256 45076355 -144203199 + MER96B DNA MER1_type? 319 417 0 204 267 0 0 chr6 45076821 45076866 -144202688 + G-rich Low_complexity Low_complexity 6 50 0 667 269 81 40 chr6 45076873 45077056 -144202498 - MIR SINE MIR -3 259 64 779 182 156 0 chr6 45077056 45077210 -144202344 - MER45A DNA AcHobo 0 178 1 667 269 81 40 chr6 45077210 45077249 -144202305 - MIR SINE MIR -198 64 28 2252 90 7 0 chr6 45077322 45077623 -144201931 - AluSp SINE Alu -10 303 1 244 306 88 112 chr6 45077642 45077694 -144201860 - MIR SINE MIR -77 185 133 1892 138 21 0 chr6 45077694 45077983 -144201571 - AluSq SINE Alu -18 295 1 244 306 88 112 chr6 45077983 45078100 -144201454 - MIR SINE MIR -129 133 20 739 241 116 10 chr6 45078932 45079131 -144200423 + MIR SINE MIR 36 255 -7 2251 104 0 0 chr6 45079136 45079443 -144200111 - AluSg SINE Alu -3 307 1 1530 155 121 0 chr6 45079516 45079839 -144199715 - L1MB7 LINE L1 0 6184 5823 2332 74 0 13 chr6 45079839 45080148 -144199406 - AluY SINE Alu -6 305 1 838 136 15 0 chr6 45080149 45080281 -144199273 - AluJb SINE Alu -178 134 1 471 223 0 0 chr6 45080282 45080376 -144199178 - MER33 DNA MER1_type -228 96 3 2032 93 4 0 chr6 45080401 45080671 -144198883 - AluSg SINE Alu -17 293 23 2159 105 7 0 chr6 45080675 45080969 -144198585 - AluSx SINE Alu -16 296 1 2331 84 3 0 chr6 45081912 45082211 -144197343 + AluSq SINE Alu 1 300 -13 2030 158 71 45 chr6 45082822 45082890 -144196664 - Tigger2a DNA MER2_type -2274 434 369 1760 120 52 0 chr6 45082890 45083183 -144196371 - AluJb SINE Alu 0 307 1 2030 158 71 45 chr6 45083183 45083536 -144196018 - Tigger2a DNA MER2_type -2339 369 1 259 250 0 0 chr6 45083649 45083705 -144195849 - MIR SINE MIR -89 173 118 2099 101 10 7 chr6 45083705 45084013 -144195541 + AluJb SINE Alu 1 309 -3 2091 117 0 7 chr6 45084013 45084312 -144195242 + AluSq SINE Alu 1 297 -16 1916 145 0 0 chr6 45084322 45084651 -144194903 + AluSx SINE Alu 12 312 0 519 187 84 65 chr6 45084690 45084845 -144194709 - MER91B DNA MER1_type -32 158 1 221 212 8 136 chr6 45085106 45085224 -144194330 - MER91B DNA MER1_type -87 103 1 390 235 13 3 chr6 45085761 45085915 -144193639 - Charlie1b DNA MER1_type -323 200 6 501 262 331 0 chr6 45086253 45086699 -144192855 + L2 LINE L2 2714 3308 -5 279 256 128 8 chr6 45088169 45088302 -144191252 - Charlie7 DNA MER1_type -17 2595 2447 893 234 134 21 chr6 45088344 45088868 -144190686 - Charlie7 DNA MER1_type -1941 671 56 301 190 38 13 chr6 45089015 45089094 -144190460 + Charlie4 DNA MER1_type 1822 1902 -59 2022 121 13 26 chr6 45089197 45089510 -144190044 - AluSg SINE Alu -1 309 1 364 355 54 16 chr6 45090020 45090206 -144189348 - L2 LINE L2 -1 3271 3079 2007 141 0 10 chr6 45090447 45090753 -144188801 - AluSx SINE Alu -9 303 1 2280 81 7 0 chr6 45091660 45091955 -144187599 - AluSp SINE Alu -16 297 1 1638 136 37 20 chr6 45092269 45092563 -144186991 - AluJo SINE Alu -13 299 1 544 222 56 0 chr6 45093782 45093908 -144185646 - FLAM_A SINE Alu -9 133 1 1916 138 0 14 chr6 45093911 45094227 -144185327 - AluSx SINE Alu 0 312 1 1952 112 4 4 chr6 45095278 45095554 -144184000 - AluSx SINE Alu -32 280 5 1479 146 86 8 chr6 45096065 45096333 -144183221 - AluSg SINE Alu -16 294 6 807 113 60 15 chr6 45096333 45096466 -144183088 - AluJb SINE Alu -173 139 1 324 325 13 13 chr6 45096613 45096770 -144182784 - L1MC4a LINE L1 -1841 5967 5811 2470 57 0 0 chr6 45096790 45097089 -144182465 - AluY SINE Alu -12 299 1 500 263 25 44 chr6 45097092 45097252 -144182302 + MIR SINE MIR 102 258 -4 2232 95 3 0 chr6 45097254 45097548 -144182006 - AluSx SINE Alu -16 296 2 588 310 27 5 chr6 45097709 45097896 -144181658 - MIR SINE MIR -52 210 20 2178 127 0 0 chr6 45098161 45098469 -144181085 + AluSg SINE Alu 1 308 -2 219 282 164 80 chr6 45098535 45098806 -144180748 - L2 LINE L2 -1 3312 2986 2107 77 20 34 chr6 45098806 45099104 -144180450 - AluSg SINE Alu -14 296 3 219 282 164 80 chr6 45099104 45099283 -144180271 - L2 LINE L2 -327 2986 2824 21 36 0 0 chr6 45099335 45099363 -144180191 + AT_rich Low_complexity Low_complexity 1 28 0 2491 55 3 0 chr6 45099372 45099679 -144179875 - AluY SINE Alu -3 308 1 814 129 0 0 chr6 45099679 45099795 -144179759 - AluJo/FLAM SINE Alu -196 116 1 562 221 6 87 chr6 45099796 45099868 -144179686 - MIR SINE MIR -37 225 149 2474 52 0 7 chr6 45099868 45100176 -144179378 - AluY SINE Alu -5 306 1 562 221 6 87 chr6 45100176 45100275 -144179279 - MIR SINE MIR -113 149 68 222 37 0 0 chr6 45100302 45100329 -144179225 + (TATG)n Simple_repeat Simple_repeat 4 30 0 2015 105 0 11 chr6 45100334 45100619 -144178935 - AluSx SINE Alu -30 282 1 235 362 58 16 chr6 45100821 45101009 -144178545 - L2 LINE L2 -551 2763 2568 237 261 14 34 chr6 45101021 45101176 -144178378 + MIR SINE MIR 111 262 0 1428 172 61 20 chr6 45101699 45101995 -144177559 - AluJb SINE Alu -4 308 1 1923 90 90 0 chr6 45102247 45102525 -144177029 - AluSx SINE Alu -9 303 1 295 232 112 24 chr6 45104945 45105070 -144174484 - MIR SINE MIR -101 161 26 630 213 140 0 chr6 45106284 45106434 -144173120 - AluSp SINE Alu -16 297 127 1976 87 28 7 chr6 45106597 45106885 -144172669 - AluY SINE Alu -17 294 1 858 148 35 0 chr6 45106934 45107076 -144172478 + AluSg/x SINE Alu 132 278 -32 219 252 138 41 chr6 45107570 45107693 -144171861 + MIR3 SINE MIR 36 170 -38 315 127 119 12 chr6 45107706 45107826 -144171728 + MER53 DNA DNA 1 189 0 2056 91 10 42 chr6 45107972 45108280 -144171274 - AluY SINE Alu -13 298 1 189 0 0 0 chr6 45108772 45108793 -144170761 + (T)n Simple_repeat Simple_repeat 1 21 0 22 70 0 0 chr6 45108867 45108910 -144170644 + AT_rich Low_complexity Low_complexity 1 43 0 360 283 131 0 chr6 45111653 45111752 -144167802 - MER91A DNA MER1_type -83 113 2 351 248 0 88 chr6 45111789 45111926 -144167628 - L1ME4a LINE L1 -54 6067 5943 2173 105 7 0 chr6 45111967 45112263 -144167291 - AluSq SINE Alu -15 298 1 1582 152 0 55 chr6 45112981 45113291 -144166263 - AluJo SINE Alu -11 301 9 283 195 166 3 chr6 45113826 45113909 -144165645 + MIR SINE MIR 33 129 -79 2283 102 0 0 chr6 45114015 45114320 -144165234 - AluSg SINE Alu -5 305 1 226 207 0 35 chr6 45115269 45115327 -144164227 + GA-rich Low_complexity Low_complexity 2 57 0 21 0 0 0 chr6 45115520 45115541 -144164013 + GC_rich Low_complexity Low_complexity 1 21 0 780 164 33 0 chr6 45115647 45115769 -144163785 - FLAM_A SINE Alu -6 127 2 535 234 76 63 chr6 45115842 45116000 -144163554 + MER91A DNA MER1_type 1 160 -36 601 259 146 14 chr6 45116698 45116918 -144162636 - MIR SINE MIR -1 261 13 2097 87 4 4 chr6 45117131 45117406 -144162148 - AluSx SINE Alu -16 296 22 775 215 0 0 chr6 45117773 45117908 -144161646 + AluJo SINE Alu 2 136 -176 180 277 191 0 chr6 45118210 45118304 -144161250 + L2 LINE L2 3202 3313 0 196 361 57 10 chr6 45118654 45118848 -144160706 + L2 LINE L2 2549 2751 -563 467 269 31 0 chr6 45118948 45119078 -144160476 + MIR SINE MIR 63 196 -66 343 311 4 114 chr6 45119117 45119397 -144160157 + L2 LINE L2 2936 3184 -88 338 207 107 95 chr6 45122023 45122192 -144157362 + MIR SINE MIR 79 249 -13 1797 157 6 13 chr6 45122281 45122416 -144157138 + AluSx SINE Alu 1 135 -177 2200 100 10 0 chr6 45122416 45122716 -144156838 + AluSg SINE Alu 3 305 -5 1797 157 6 13 chr6 45122716 45122893 -144156661 + AluSx SINE Alu 135 311 -1 2033 78 0 109 chr6 45123852 45124199 -144155355 - AluSg SINE Alu -1 309 1 1082 236 5 0 chr6 45124303 45124511 -144155043 - MIR SINE MIR -21 241 33 25 0 0 0 chr6 45124877 45124902 -144154652 + AT_rich Low_complexity Low_complexity 1 25 0 636 127 103 56 chr6 45124911 45125037 -144154517 + AluSq/x SINE Alu 5 136 -177 22 0 0 0 chr6 45125355 45125377 -144154177 + GC_rich Low_complexity Low_complexity 1 22 0 221 279 13 57 chr6 45126464 45126622 -144152932 + (CAGAGA)n Simple_repeat Simple_repeat 6 156 0 574 105 0 0 chr6 45128331 45128417 -144151137 - L1MB4 LINE L1 -1 6179 6094 255 240 248 16 chr6 45130194 45130315 -144149239 - MIR3 SINE MIR -21 187 39 805 112 0 0 chr6 45131156 45131263 -144148291 - AluSg SINE Alu -202 108 2 22 0 0 0 chr6 45131311 45131333 -144148221 + AT_rich Low_complexity Low_complexity 1 22 0 2210 102 3 6 chr6 45131576 45131890 -144147664 + AluSq SINE Alu 1 313 0 592 165 0 0 chr6 45132136 45132233 -144147321 - AluJo SINE Alu -7 305 209 22 35 0 0 chr6 45132251 45132280 -144147274 + AT_rich Low_complexity Low_complexity 1 29 0 1164 189 14 0 chr6 45132315 45132532 -144147022 - AluJo SINE Alu -92 220 1 265 120 0 0 chr6 45132533 45132583 -144146971 - Charlie2 DNA MER1_type -63 2799 2750 1030 107 7 0 chr6 45132597 45132737 -144146817 + AluJb SINE Alu 1 141 -171 238 86 52 35 chr6 45132754 45132812 -144146742 + A-rich Low_complexity Low_complexity 2 60 0 2080 136 0 13 chr6 45132851 45133167 -144146387 - AluJb SINE Alu 0 312 1 1556 141 11 38 chr6 45133368 45133631 -144145923 + AluSx SINE Alu 4 259 -53 382 208 148 0 chr6 45133743 45133844 -144145710 + L2 LINE L2 3192 3307 -6 584 212 26 0 chr6 45133846 45133959 -144145595 + FLAM_C SINE Alu 2 117 -26 228 268 186 0 chr6 45134057 45134154 -144145400 - L2 LINE L2 0 3272 3158 326 324 29 0 chr6 45134813 45134915 -144144639 + MIR SINE MIR 87 191 -71 835 228 22 0 chr6 45134985 45135169 -144144385 - MIR SINE MIR -72 190 3 187 156 0 0 chr6 45136458 45136490 -144143064 - MIR SINE MIR -93 115 84 623 281 176 1 chr6 45136756 45136978 -144142576 - MIR SINE MIR -1 261 1 23 33 0 0 chr6 45137772 45137802 -144141752 + AT_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr6 45137826 45137863 -144141691 + AT_rich Low_complexity Low_complexity 1 37 0 487 272 89 17 chr6 45137928 45138108 -144141446 - MIR SINE MIR -58 204 12 311 299 0 17 chr6 45138615 45138792 -144140762 + (CTG)n Simple_repeat Simple_repeat 2 175 0 189 216 0 0 chr6 45138953 45138990 -144140564 - MIR SINE MIR -108 154 118 518 256 30 0 chr6 45139492 45139625 -144139929 - L2 LINE L2 0 3313 3177 387 328 93 5 chr6 45139627 45139831 -144139723 - MIR SINE MIR -27 235 14 1669 179 45 10 chr6 45139864 45140250 -144139304 + L1MB4 LINE L1 5459 6100 -80 * 7684 139 16 80 chr6 45140249 45140724 -144138830 + L1MA4 LINE L1 3779 4283 -2017 830 144 0 38 chr6 45140724 45140856 -144138698 + AluJo SINE Alu 5 131 -171 2162 93 0 50 chr6 45140856 45141177 -144138377 + AluSq SINE Alu 1 305 -8 7684 139 16 80 chr6 45141177 45141669 -144137885 + L1MA4 LINE L1 4282 4804 -1496 861 199 0 6 chr6 45141669 45141840 -144137714 + AluJo SINE Alu 136 305 -7 7684 139 16 80 chr6 45141840 45142595 -144136959 + L1MA4 LINE L1 4804 5454 -846 2309 99 3 0 chr6 45142595 45142899 -144136655 - AluSq SINE Alu -8 305 1 7684 139 16 80 chr6 45142899 45143689 -144135865 + L1MA4 LINE L1 5454 6293 -7 386 103 16 0 chr6 45143695 45143765 -144135789 + L1MB4 LINE L1 6087 6156 -24 459 266 82 13 chr6 45145018 45145176 -144134378 - MIR3 SINE MIR -9 199 31 432 214 231 22 chr6 45147484 45147666 -144131888 - MIR SINE MIR 0 262 43 376 304 82 27 chr6 45147654 45147838 -144131716 - MIR SINE MIR -68 194 1 * 2070 113 0 0 chr6 45148261 45148634 -144130920 - AluSx SINE Alu 0 373 1 782 139 7 36 chr6 45148639 45148776 -144130778 - FLAM_C SINE Alu 0 133 1 247 265 224 20 chr6 45148777 45148924 -144130630 - MIR SINE MIR -50 212 36 229 281 124 41 chr6 45148955 45149076 -144130478 + L2 LINE L2 3133 3263 -9 453 179 66 19 chr6 45149317 45149423 -144130131 + MLT1K LTR MaLR 478 588 0 2064 103 0 4 chr6 45149614 45149909 -144129645 - AluSx SINE Alu -46 266 1 293 294 266 7 chr6 45150079 45150222 -144129332 + MIR SINE MIR 74 253 -9 436 281 143 21 chr6 45150252 45150336 -144129218 + L1ME4a LINE L1 5844 5916 -205 380 221 13 0 chr6 45150336 45150413 -144129141 - MER116 DNA Mariner 0 80 3 436 281 143 21 chr6 45150413 45150492 -144129062 + L1ME4a LINE L1 5916 5984 -137 2404 99 0 0 chr6 45150492 45150796 -144128758 - AluSq SINE Alu -9 304 1 436 281 143 21 chr6 45150796 45150831 -144128723 + L1ME4a LINE L1 5984 6013 -108 2395 102 0 3 chr6 45150831 45151145 -144128409 + AluSq SINE Alu 1 313 0 2043 117 3 20 chr6 45151152 45151434 -144128120 + AluSx SINE Alu 1 279 -33 204 40 0 0 chr6 45151434 45151459 -144128095 + (CA)n Simple_repeat Simple_repeat 1 25 0 2043 117 3 20 chr6 45151459 45151475 -144128079 + AluSx SINE Alu 279 294 -18 436 281 143 21 chr6 45151475 45151504 -144128050 + L1ME4a LINE L1 6018 6110 -11 1048 193 0 0 chr6 45151511 45151687 -144127867 - AluJb SINE Alu -6 306 131 1249 136 0 0 chr6 45151702 45151878 -144127676 + AluJb SINE Alu 124 299 -13 349 186 0 17 chr6 45151916 45151975 -144127579 + AluJ/FLAM SINE Alu 3 60 -242 488 130 0 0 chr6 45151978 45152047 -144127507 - AluJ/FLAM SINE Alu -235 77 9 1122 274 67 47 chr6 45152364 45152695 -144126859 + L2 LINE L2 2737 3069 -244 1505 174 3 93 chr6 45152695 45152879 -144126675 - AluSq SINE Alu -21 292 148 2217 105 7 3 chr6 45152879 45153174 -144126380 - AluSq SINE Alu -17 296 1 1505 174 3 93 chr6 45153174 45153310 -144126244 - AluSq SINE Alu -165 148 1 1122 274 67 47 chr6 45153310 45153555 -144125999 + L2 LINE L2 3069 3308 -5 199 315 27 0 chr6 45153629 45153702 -144125852 + MIR3 SINE MIR 105 179 -29 377 206 0 0 chr6 45154082 45154155 -144125399 - MIR SINE MIR -103 159 87 337 240 83 41 chr6 45154195 45154316 -144125238 + MER5B DNA MER1_type 14 139 -39 1805 176 14 3 chr6 45154655 45154944 -144124610 - AluJb SINE Alu -19 293 2 2415 104 0 0 chr6 45154998 45155297 -144124257 + AluSx SINE Alu 1 299 -13 254 223 179 18 chr6 45155572 45155684 -144123870 - MIR SINE MIR -56 152 23 274 297 102 55 chr6 45156270 45156506 -144123048 - L3b LINE CR1 -163 1420 1174 1682 197 0 16 chr6 45156698 45157003 -144122551 + AluJo SINE Alu 1 300 -12 311 343 97 30 chr6 45157561 45157829 -144121725 + L3b LINE CR1 1104 1389 -194 332 221 171 13 chr6 45159529 45159682 -144119872 + MIR SINE MIR 32 214 -48 306 294 12 0 chr6 45162130 45162215 -144117339 - MIR3 SINE MIR -26 182 97 423 277 110 13 chr6 45162777 45162932 -144116622 - MIR3 SINE MIR -8 200 31 233 307 27 0 chr6 45163596 45163671 -144115883 - MIR SINE MIR -116 92 16 203 305 11 11 chr6 45164489 45164584 -144114970 + G-rich Low_complexity Low_complexity 6 100 0 396 320 40 23 chr6 45165946 45166121 -144113433 - MIR3 SINE MIR -15 193 16 448 286 62 6 chr6 45167779 45167940 -144111614 - MIR3 SINE MIR -1 207 38 1904 128 37 17 chr6 45168053 45168350 -144111204 - AluJb SINE Alu -9 303 1 625 313 98 41 chr6 45169622 45170258 -144109296 + L2 LINE L2 2590 3272 0 1030 198 11 48 chr6 45171360 45171628 -144107926 + MIR SINE MIR 5 262 0 2050 163 0 0 chr6 45172023 45172324 -144107230 + AluJb SINE Alu 10 310 -2 2294 119 0 7 chr6 45172324 45172627 -144106927 + AluSx SINE Alu 1 301 -11 2409 105 0 6 chr6 45172631 45172945 -144106609 + AluSx SINE Alu 1 312 0 388 209 191 0 chr6 45173474 45173584 -144105970 - MER94 DNA DNA -3 131 1 202 200 0 0 chr6 45173741 45173781 -144105773 + (TG)n Simple_repeat Simple_repeat 1 40 0 413 118 0 0 chr6 45174587 45174655 -144104899 - MER53 DNA DNA 0 189 122 652 190 33 0 chr6 45174711 45174832 -144104722 - FLAM_A SINE Alu -8 125 1 368 239 80 0 chr6 45174892 45175005 -144104549 - MER53 DNA DNA -67 122 1 1684 189 3 16 chr6 45175068 45175375 -144104179 - AluJo SINE Alu -9 303 1 217 367 50 35 chr6 45176277 45176536 -144103018 + L2 LINE L2 2222 2484 -830 846 135 8 0 chr6 45176643 45176769 -144102785 - FRAM SINE Alu -8 168 42 1668 211 10 0 chr6 45176894 45177193 -144102361 + AluJo SINE Alu 1 302 -10 2609 68 0 0 chr6 45177298 45177606 -144101948 + AluY SINE Alu 1 308 -3 1971 75 4 0 chr6 45178628 45178867 -144100687 + AluSp SINE Alu 72 311 -2 2346 94 10 10 chr6 45178869 45179177 -144100377 + AluY SINE Alu 1 308 -3 716 265 59 17 chr6 45179302 45179540 -144100014 - MIR SINE MIR -7 255 8 2200 98 26 36 chr6 45179926 45180233 -144099321 + AluSq SINE Alu 1 304 -9 25 0 0 0 chr6 45180236 45180261 -144099293 + AT_rich Low_complexity Low_complexity 1 25 0 602 206 123 12 chr6 45180410 45180580 -144098974 + MIR SINE MIR 14 202 -60 820 225 41 18 chr6 45180840 45181058 -144098496 - MIR SINE MIR -22 240 18 449 347 32 32 chr6 45181135 45181386 -144098168 - L3b LINE CR1 -219 1364 1114 2394 93 0 7 chr6 45181850 45182152 -144097402 - AluSg SINE Alu -10 300 1 891 191 54 0 chr6 45182293 45182461 -144097093 - AluJo SINE Alu -17 295 119 670 59 0 0 chr6 45183195 45183280 -144096274 + FLAM_C SINE Alu 27 111 -32 1616 127 0 0 chr6 45183312 45183524 -144096030 - AluSg SINE Alu -98 212 1 1999 125 0 18 chr6 45183552 45183833 -144095721 + AluSx SINE Alu 1 276 -36 2377 108 0 6 chr6 45183839 45184153 -144095401 - AluSx SINE Alu 0 312 1 996 194 43 0 chr6 45184198 45184384 -144095170 + AluJo SINE Alu 105 298 -14 405 58 0 0 chr6 45184503 45184555 -144094999 + (CA)n Simple_repeat Simple_repeat 1 52 0 1592 162 0 94 chr6 45184555 45184864 -144094690 - AluJo SINE Alu -30 282 3 1879 153 0 50 chr6 45184898 45185218 -144094336 - AluJo SINE Alu -8 304 1 2370 96 0 3 chr6 45185330 45185632 -144093922 - AluSx SINE Alu -5 307 7 1019 245 155 28 chr6 45185672 45186027 -144093527 + L1MC4a LINE L1 5501 5900 -1908 657 115 0 0 chr6 45186030 45186126 -144093428 - AluSg/x SINE Alu -17 292 197 2257 96 10 3 chr6 45186168 45186461 -144093093 + AluSc SINE Alu 1 295 -14 2305 113 7 0 chr6 45186592 45186894 -144092660 + AluSg SINE Alu 1 304 -6 21 0 0 0 chr6 45186921 45186942 -144092612 + AT_rich Low_complexity Low_complexity 1 21 0 254 264 9 45 chr6 45187172 45187282 -144092272 + 7SK RNA RNA 5 110 -83 2445 95 0 0 chr6 45187721 45188026 -144091528 - AluSx SINE Alu -7 305 1 1839 108 126 22 chr6 45188226 45188503 -144091051 - AluSg SINE Alu -4 306 1 318 311 78 0 chr6 45189356 45189459 -144090095 + L2 LINE L2 3161 3271 -1 1797 145 17 17 chr6 45189628 45189917 -144089637 + AluJb SINE Alu 1 289 -23 2557 59 7 0 chr6 45189926 45190231 -144089323 + AluY SINE Alu 1 307 -4 290 261 104 30 chr6 45190256 45190390 -144089164 - MIR3 SINE MIR -64 144 1 2352 272 61 26 chr6 45190403 45190622 -144088932 + L2 LINE L2 2239 2449 -864 1835 107 12 0 chr6 45190622 45190865 -144088689 + AluSg SINE Alu 49 294 -16 2352 272 61 26 chr6 45190865 45191490 -144088064 + L2 LINE L2 2449 3134 -179 2319 116 0 0 chr6 45191490 45191800 -144087754 - AluSx SINE Alu -2 310 1 2352 272 61 26 chr6 45191800 45191973 -144087581 + L2 LINE L2 3134 3300 -13 180 77 0 0 chr6 45191976 45192002 -144087552 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 335 255 10 10 chr6 45192449 45192551 -144087003 - L1MC5 LINE L1 -54 7907 7806 188 360 118 0 chr6 45192901 45192974 -144086580 - L2 LINE L2 -5 3267 3204 2264 128 0 0 chr6 45192974 45193278 -144086276 + AluSx SINE Alu 1 304 -8 188 360 118 0 chr6 45193278 45193357 -144086197 - L2 LINE L2 -68 3204 3097 1127 221 61 80 chr6 45194656 45195082 -144084472 + MER39 LTR ERV1 249 666 -41 447 230 0 0 chr6 45195211 45195298 -144084256 + FLAM_A SINE Alu 1 87 -55 244 268 148 86 chr6 45195428 45195637 -144083917 + MIR SINE MIR 41 262 0 369 311 173 22 chr6 45195807 45196032 -144083522 - MIR SINE MIR -2 260 2 415 309 7 7 chr6 45196220 45196372 -144083182 - MIR3 SINE MIR 0 208 57 2380 73 6 19 chr6 45198762 45199076 -144080478 + AluSg SINE Alu 1 310 0 992 167 90 56 chr6 45199454 45199617 -144079937 - Charlie2a DNA MER1_type -2 2860 2704 2097 101 31 14 chr6 45199617 45199903 -144079651 - AluSc SINE Alu -18 291 1 992 167 90 56 chr6 45199903 45199928 -144079626 - Charlie2a DNA MER1_type -158 2704 2681 2279 100 7 0 chr6 45199928 45200219 -144079335 + AluSg SINE Alu 1 293 -17 992 167 90 56 chr6 45200219 45200352 -144079202 - Charlie2a DNA MER1_type -181 2681 2527 2660 204 128 7 chr6 45200421 45201652 -144077902 - Charlie2a DNA MER1_type -549 2313 902 459 233 43 68 chr6 45201673 45201836 -144077718 - Charlie2a DNA MER1_type -2500 282 124 2469 90 0 0 chr6 45201836 45202137 -144077417 - AluSg SINE Alu -9 301 1 1358 91 0 0 chr6 45202138 45202313 -144077241 - AluSq SINE Alu -3 310 136 2144 130 7 0 chr6 45202314 45202613 -144076941 - AluSx SINE Alu -11 301 1 340 145 0 0 chr6 45202615 45202677 -144076877 - Charlie2a DNA MER1_type -2649 133 72 201 208 83 0 chr6 45203206 45203254 -144076300 + L2 LINE L2 3218 3269 -3 21 0 0 0 chr6 45203962 45203983 -144075571 + AT_rich Low_complexity Low_complexity 1 21 0 2454 94 10 0 chr6 45205574 45205882 -144073672 + AluSx SINE Alu 1 311 -1 192 77 0 0 chr6 45206290 45206316 -144073238 + (A)n Simple_repeat Simple_repeat 1 26 0 1287 259 189 11 chr6 45208533 45209177 -144070377 + L2 LINE L2 2297 3074 -239 184 152 0 0 chr6 45209185 45209218 -144070336 - L2 LINE L2 -22 3291 3259 187 238 0 24 chr6 45209218 45209260 -144070294 - MIR SINE MIR -148 60 20 2259 108 0 10 chr6 45209565 45209872 -144069682 - AluSq SINE Alu -9 304 1 2226 105 7 13 chr6 45210025 45210331 -144069223 - AluSq SINE Alu -9 304 1 609 262 112 19 chr6 45210506 45210720 -144068834 + MIR SINE MIR 29 262 0 691 101 25 17 chr6 45215990 45216109 -144063445 + L1MB1 LINE L1 6038 6157 -11 337 350 121 6 chr6 45216875 45217032 -144062522 + MER91A DNA MER1_type 1 175 -21 251 122 20 0 chr6 45217400 45217449 -144062105 + CT-rich Low_complexity Low_complexity 1 50 0 707 224 219 0 chr6 45218342 45218552 -144061002 - MIR SINE MIR 0 262 7 191 344 8 56 chr6 45220018 45220143 -144059411 + L3b LINE CR1 1278 1396 -187 752 243 84 17 chr6 45220818 45221057 -144058497 - MIR SINE MIR -1 261 7 204 361 38 8 chr6 45222383 45222516 -144057038 + L3b LINE CR1 1153 1289 -294 209 311 0 33 chr6 45223114 45223204 -144056350 + GA-rich Low_complexity Low_complexity 4 90 0 182 290 62 80 chr6 45224432 45224608 -144054946 - L2 LINE L2 -1 3271 3099 572 252 25 44 chr6 45224634 45224793 -144054761 - L2 LINE L2 -5 3267 3112 192 324 36 54 chr6 45226499 45226610 -144052944 - MIR3 SINE MIR -49 159 51 525 313 15 41 chr6 45227500 45227603 -144051951 - MIR SINE MIR -15 247 150 1459 173 75 44 chr6 45227603 45227898 -144051656 - AluJo SINE Alu -8 304 1 525 313 15 41 chr6 45227898 45227989 -144051565 - MIR SINE MIR -112 150 58 391 296 121 25 chr6 45228596 45228876 -144050678 - L1ME LINE L1 -324 5797 5491 369 218 27 55 chr6 45229110 45229220 -144050334 - MER91A DNA MER1_type 0 196 90 2385 84 17 0 chr6 45230248 45230544 -144049010 + AluSg SINE Alu 2 302 -8 508 258 103 7 chr6 45230776 45230931 -144048623 - MER5B DNA MER1_type -4 174 5 234 333 94 0 chr6 45231113 45231209 -144048345 + MER5A DNA MER1_type 10 114 -75 369 289 155 11 chr6 45231702 45231889 -144047665 + MIR SINE MIR 33 246 -16 807 157 176 0 chr6 45231941 45232094 -144047460 - MER3 DNA MER1_type -10 199 20 2330 118 0 10 chr6 45232365 45232679 -144046875 - AluSx SINE Alu -1 311 1 433 248 52 52 chr6 45233379 45233532 -144046022 + MER5B DNA MER1_type 1 153 -25 598 280 74 37 chr6 45233572 45233815 -144045739 + MIR SINE MIR 6 257 -5 1750 184 3 23 chr6 45233815 45234120 -144045434 - AluJo SINE Alu -13 299 1 405 255 21 0 chr6 45235358 45235452 -144044102 - L2 LINE L2 0 3313 3218 228 263 152 30 chr6 45236724 45236823 -144042731 - MIR3 SINE MIR -84 124 14 225 119 0 0 chr6 45239760 45239802 -144039752 + (C)n Simple_repeat Simple_repeat 1 42 0 27 87 0 0 chr6 45242702 45242771 -144036783 + GC_rich Low_complexity Low_complexity 1 69 0 242 267 0 0 chr6 45243038 45243098 -144036456 + CT-rich Low_complexity Low_complexity 2 61 0 532 119 10 10 chr6 45243106 45243207 -144036347 + (TCC)n Simple_repeat Simple_repeat 3 103 0 204 200 117 33 chr6 45244577 45244637 -144034917 + MIR3 SINE MIR 92 156 -52 187 250 62 0 chr6 45244771 45244819 -144034735 + MIR3 SINE MIR 148 198 -10 220 260 78 13 chr6 45245961 45246038 -144033516 + MIR SINE MIR 89 170 -92 383 323 19 32 chr6 45246046 45246204 -144033350 + MIR SINE MIR 5 160 -102 640 261 107 14 chr6 45246233 45246448 -144033106 + MIR SINE MIR 28 262 0 2158 110 45 0 chr6 45246493 45246785 -144032769 + AluSx SINE Alu 1 305 -7 549 299 167 5 chr6 45247125 45247346 -144032208 - MIR SINE MIR -4 258 2 414 294 63 8 chr6 45248656 45248782 -144030772 + MIR SINE MIR 20 152 -110 285 323 21 0 chr6 45248870 45248963 -144030591 + L2 LINE L2 2198 2292 -1022 180 324 43 54 chr6 45248965 45249150 -144030404 + L2 LINE L2 2235 2417 -897 1760 162 18 3 chr6 45249457 45249741 -144029813 + AluJo SINE Alu 12 299 -13 365 267 61 23 chr6 45249852 45249983 -144029571 + L2 LINE L2 3136 3271 -1 2524 80 3 0 chr6 45251352 45251653 -144027901 - AluSp SINE Alu -11 302 1 220 118 0 0 chr6 45251985 45252019 -144027535 - MIR SINE MIR -11 251 218 191 283 33 0 chr6 45252019 45252045 -144027509 - L2 LINE L2 -17 3255 3194 209 254 0 0 chr6 45252820 45252879 -144026675 - MIR SINE MIR -69 193 135 213 232 71 0 chr6 45252940 45252996 -144026558 + MIR SINE MIR 82 141 -67 452 271 69 0 chr6 45253276 45253420 -144026134 + MIR3 SINE MIR 53 206 -2 186 338 80 7 chr6 45253898 45254049 -144025505 + L3 LINE CR1 850 1011 -566 1715 143 27 20 chr6 45254074 45254367 -144025187 + AluJb SINE Alu 1 295 -17 514 251 37 25 chr6 45254454 45254617 -144024937 - MIR SINE MIR -76 186 22 220 303 118 8 chr6 45254725 45254844 -144024710 + L3 LINE CR1 1331 1462 -115 416 217 75 25 chr6 45255076 45255196 -144024358 + MIR3 SINE MIR 33 158 -50 342 219 0 0 chr6 45255729 45255793 -144023761 + MIR SINE MIR 47 110 -152 421 259 28 0 chr6 45255798 45255906 -144023648 + MER94 DNA DNA 23 133 -1 547 257 18 35 chr6 45257160 45257331 -144022223 + MIR SINE MIR 87 254 -8 315 213 43 21 chr6 45257344 45257438 -144022116 - MIR SINE MIR -77 185 90 183 143 0 24 chr6 45257560 45257602 -144021952 - L2 LINE L2 -37 3235 3195 199 312 35 65 chr6 45257801 45257971 -144021583 - MIR SINE MIR -72 190 26 198 0 0 0 chr6 45258005 45258027 -144021527 + (T)n Simple_repeat Simple_repeat 1 22 0 200 292 0 0 chr6 45259090 45259155 -144020399 - MIR3 SINE MIR -27 181 117 583 195 18 18 chr6 45259333 45259446 -144020108 + MER81 DNA DNA 1 113 -1 411 281 79 6 chr6 45260292 45260456 -144019098 - MIR SINE MIR -47 215 40 186 200 13 107 chr6 45261805 45261855 -144017699 - L2 LINE L2 -1 3271 3229 683 292 58 12 chr6 45261855 45262098 -144017456 + MIR SINE MIR 1 254 -8 186 43 0 0 chr6 45262098 45262121 -144017433 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2000 126 42 0 chr6 45262715 45263000 -144016554 + AluSx SINE Alu 1 297 -15 408 20 0 0 chr6 45263025 45263074 -144016480 + (TG)n Simple_repeat Simple_repeat 2 50 0 2016 126 36 0 chr6 45263074 45263351 -144016203 - AluSx SINE Alu -25 287 1 362 180 0 0 chr6 45263496 45263557 -144015997 + L1ME1 LINE L1 34 94 -6302 236 217 9 28 chr6 45263563 45263669 -144015885 + GA-rich Low_complexity Low_complexity 3 106 0 6431 215 83 50 chr6 45263675 45264182 -144015372 + L1ME1 LINE L1 128 617 -5598 1687 163 0 42 chr6 45264182 45264489 -144015065 - AluJb SINE Alu -18 294 1 6431 215 83 50 chr6 45264489 45264504 -144015050 + L1ME1 LINE L1 617 630 -5585 2081 74 93 4 chr6 45264504 45264774 -144014780 - AluY SINE Alu -17 294 1 6431 215 83 50 chr6 45264774 45265006 -144014548 + L1ME1 LINE L1 630 853 -5362 2244 102 0 19 chr6 45265006 45265321 -144014233 + AluSc SINE Alu 1 309 0 6431 215 83 50 chr6 45265321 45266133 -144013421 + L1ME1 LINE L1 853 1637 -4578 1896 173 0 0 chr6 45266133 45266433 -144013121 + AluJb SINE Alu 1 300 -12 6431 215 83 50 chr6 45266433 45266939 -144012615 + L1ME1 LINE L1 1637 2125 -4090 1835 113 8 0 chr6 45266939 45267205 -144012349 + L1MB2 LINE L1 5904 6171 0 6431 215 83 50 chr6 45267205 45268368 -144011186 + L1ME1 LINE L1 2125 3433 -2782 2211 122 0 16 chr6 45268372 45268684 -144010870 + AluSx SINE Alu 1 307 -5 2071 139 18 3 chr6 45268726 45269065 -144010489 + L1MC1 LINE L1 5990 6333 0 877 142 0 0 chr6 45269070 45269197 -144010357 - FLAM_C SINE Alu -6 127 1 2719 199 43 0 chr6 45269217 45269780 -144009774 + L1ME1 LINE L1 5386 5972 -261 1796 135 46 104 chr6 45269780 45270194 -144009360 + MLT1B LTR MaLR 1 390 0 1027 197 88 13 chr6 45270194 45270451 -144009103 + L1ME1 LINE L1 5965 6403 0 2567 58 7 0 chr6 45270801 45271109 -144008445 + AluY SINE Alu 1 310 -1 228 297 39 39 chr6 45271463 45271591 -144007963 - L2 LINE L2 -1 3271 3144 367 263 106 25 chr6 45271802 45271962 -144007592 - MLT1L LTR MaLR -335 280 108 606 270 68 22 chr6 45272237 45272459 -144007095 + MIR SINE MIR 31 262 0 519 266 106 18 chr6 45272676 45272902 -144006652 + MIR SINE MIR 6 251 -11 187 310 0 46 chr6 45272934 45273021 -144006533 + L2 LINE L2 2227 2309 -1005 280 236 109 0 chr6 45273266 45273381 -144006173 - MIR SINE MIR -75 133 6 1140 149 21 54 chr6 45274222 45274464 -144005090 + L1MB4 LINE L1 5947 6180 0 553 254 166 60 chr6 45275967 45276365 -144003189 - L2 LINE L2 -1 3312 2873 367 255 28 0 chr6 45276876 45276982 -144002572 + MIR SINE MIR 43 151 -57 2101 145 0 0 chr6 45277403 45277700 -144001854 + AluJb SINE Alu 1 297 -15 442 117 52 0 chr6 45278067 45278144 -144001410 - FLAM_C SINE Alu 0 143 63 2262 99 3 0 chr6 45278188 45278480 -144001074 - AluSx SINE Alu -19 293 1 2367 86 3 0 chr6 45279746 45280047 -143999507 - AluSp SINE Alu -11 302 1 1862 76 106 0 chr6 45280050 45280314 -143999240 - AluSx SINE Alu -18 294 3 2289 91 13 32 chr6 45283039 45283348 -143996206 - AluSx SINE Alu -9 303 1 5785 80 39 28 chr6 45283363 45284213 -143995341 - L1MA3 LINE L1 0 6305 5447 504 228 16 0 chr6 45284325 45284452 -143995102 - L1MC5 LINE L1 -36 7925 7797 648 247 108 132 chr6 45285806 45285885 -143993669 - MLT1F LTR MaLR 0 542 463 1129 172 221 0 chr6 45285885 45286129 -143993425 - AluJo SINE Alu -3 299 2 648 247 108 132 chr6 45286129 45286467 -143993087 - MLT1F LTR MaLR -79 463 119 2360 81 17 0 chr6 45286467 45286764 -143992790 - AluSp SINE Alu -11 302 1 648 247 108 132 chr6 45286764 45286850 -143992704 - MLT1F LTR MaLR -423 119 50 1368 157 88 48 chr6 45286850 45287055 -143992499 - MER2 DNA MER2_type 0 344 120 2346 88 20 7 chr6 45287055 45287360 -143992194 + AluSc SINE Alu 1 309 0 1368 157 88 48 chr6 45287360 45287485 -143992069 - MER2 DNA MER2_type -224 120 1 648 247 108 132 chr6 45287485 45287534 -143992020 - MLT1F LTR MaLR -492 50 1 2310 98 0 7 chr6 45287828 45288124 -143991430 - AluSc SINE Alu -15 294 1 1828 164 10 30 chr6 45288151 45288449 -143991105 + AluJb SINE Alu 1 292 -20 327 329 57 73 chr6 45289071 45289442 -143990112 - L2 LINE L2 -4 3268 2904 207 250 238 0 chr6 45289647 45289727 -143989827 - L2 LINE L2 -626 2688 2590 842 179 95 18 chr6 45289732 45289900 -143989654 + AluSq SINE Alu 1 181 -132 3624 165 26 20 chr6 45289901 45290018 -143989536 - L1MC1 LINE L1 -392 5941 5826 2265 111 0 7 chr6 45290018 45290348 -143989206 - AluSx SINE Alu 0 312 1 1994 116 0 0 chr6 45290348 45290606 -143988948 - AluSx SINE Alu -17 295 38 3624 165 26 20 chr6 45290606 45291551 -143988003 - L1MC1 LINE L1 -506 5827 4873 1721 174 3 29 chr6 45291551 45291861 -143987693 + AluJb SINE Alu 1 302 -10 339 293 83 8 chr6 45291895 45292028 -143987526 - L2 LINE L2 -849 2465 2323 526 205 26 95 chr6 45292673 45292863 -143986691 - LTR41 LTR ERVL -6 767 591 990 201 68 57 chr6 45292929 45293057 -143986497 - LTR41 LTR ERVL -506 267 142 2522 207 67 23 chr6 45293057 45293621 -143985933 + MLT1E LTR MaLR 1 589 -4 990 201 68 57 chr6 45293621 45293756 -143985798 - LTR41 LTR ERVL -631 142 1 3413 260 76 29 chr6 45294036 45294676 -143984878 - ERVL LTR ERVL -331 5433 4719 1825 195 3 0 chr6 45294676 45294983 -143984571 + AluJb SINE Alu 1 308 -4 3413 260 76 29 chr6 45294983 45295438 -143984116 - ERVL LTR ERVL -1045 4719 4287 26 0 0 0 chr6 45295438 45295464 -143984090 + AT_rich Low_complexity Low_complexity 1 26 0 4463 166 69 26 chr6 45295471 45296420 -143983134 - L1MB4 LINE L1 -1 6179 5272 2193 106 3 10 chr6 45296420 45296723 -143982831 - AluSx SINE Alu 0 312 12 4463 166 69 26 chr6 45296723 45296751 -143982803 - L1MB4 LINE L1 -908 5272 5247 339 24 0 0 chr6 45296751 45296792 -143982762 - L1PA6 LINE L1 -7 6147 6107 4463 166 69 26 chr6 45296792 45297012 -143982542 - L1MB4 LINE L1 -933 5247 4767 2027 257 25 94 chr6 45297020 45297540 -143982014 - ERVL LTR ERVL -2255 3509 2955 1709 166 7 27 chr6 45297540 45297835 -143981719 + AluJo SINE Alu 1 289 -23 2027 257 25 94 chr6 45297835 45297847 -143981707 - ERVL LTR ERVL -2809 2955 2944 1603 168 37 44 chr6 45297847 45298144 -143981410 + AluJo SINE Alu 1 295 -17 2027 257 25 94 chr6 45298144 45298321 -143981233 - ERVL LTR ERVL -2820 2944 2848 257 174 22 0 chr6 45298402 45298448 -143981106 - LTR41 LTR ERVL -14 759 713 963 228 15 10 chr6 45298459 45298661 -143980893 - LTR41 LTR ERVL -568 205 3 2280 109 20 0 chr6 45299801 45300103 -143979451 - AluSq SINE Alu -5 308 1 21 0 0 0 chr6 45300210 45300231 -143979323 + AT_rich Low_complexity Low_complexity 1 21 0 281 220 51 0 chr6 45300259 45300318 -143979236 - L1ME4a LINE L1 -85 6036 5975 312 275 154 13 chr6 45300385 45300534 -143979020 + MIR3 SINE MIR 39 208 0 1858 183 83 8 chr6 45305097 45305495 -143974059 - L1MB5 LINE L1 -2 6172 5745 493 207 6 155 chr6 45305585 45305759 -143973795 - L1MB5 LINE L1 -446 5728 5581 * 5969 208 78 29 chr6 45305756 45306781 -143972773 - L1MB5 LINE L1 -1148 4998 4024 1934 146 0 10 chr6 45306781 45307090 -143972464 - AluJb SINE Alu 0 312 7 5969 208 78 29 chr6 45307090 45307182 -143972372 - L1MB5 LINE L1 -2122 4024 3938 2460 62 0 10 chr6 45307182 45307490 -143972064 - AluY SINE Alu -6 305 1 5969 208 78 29 chr6 45307490 45308019 -143971535 - L1MB5 LINE L1 -2208 3938 3271 1919 121 37 17 chr6 45308020 45308318 -143971236 - AluSx SINE Alu -8 304 1 218 93 0 23 chr6 45308319 45308362 -143971192 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1839 117 62 0 chr6 45308362 45308636 -143970918 - AluSq SINE Alu -22 291 1 283 236 0 0 chr6 45308641 45308696 -143970858 + HUERS-P1 LTR ERV1 5481 5535 -728 2018 200 34 30 chr6 45308785 45308889 -143970665 - L1M4 LINE L1 -1665 4481 4379 2175 151 42 23 chr6 45308889 45309319 -143970235 - L1MA10 LINE L1 -1 6333 5896 2018 200 34 30 chr6 45309319 45309718 -143969836 - L1M4 LINE L1 -1767 4379 3976 747 199 33 28 chr6 45309718 45309899 -143969655 - MLT1D LTR MaLR 0 505 324 * 1027 245 112 51 chr6 45309891 45310222 -143969332 - MLT1D LTR MaLR -7 498 148 875 212 58 5 chr6 45310220 45310468 -143969086 - MLT1D LTR MaLR -207 298 7 * 1600 275 49 45 chr6 45310468 45310961 -143968593 - L1M4 LINE L1 -2170 3976 3477 1516 151 121 11 chr6 45310961 45311233 -143968321 + AluJb SINE Alu 1 302 0 1600 275 49 45 chr6 45311233 45311500 -143968054 - L1M4 LINE L1 -2669 3477 3213 2128 96 3 32 chr6 45311521 45311833 -143967721 + AluSg SINE Alu 1 303 -7 243 73 0 24 chr6 45311870 45311911 -143967643 - Alu SINE Alu -5 297 258 202 225 127 14 chr6 45312036 45312107 -143967447 - L2 LINE L2 -275 2997 2919 2080 101 0 3 chr6 45312426 45312733 -143966821 + AluY SINE Alu 1 311 0 199 109 0 43 chr6 45312757 45312803 -143966751 + (GGAGAA)n Simple_repeat Simple_repeat 3 46 0 281 318 35 0 chr6 45314886 45314971 -143964583 + L2 LINE L2 2619 2706 -608 915 113 14 14 chr6 45315000 45315142 -143964412 - MER20 DNA MER1_type -48 171 30 316 367 22 22 chr6 45315203 45315429 -143964125 + L2 LINE L2 2701 2926 -388 2213 103 0 3 chr6 45315512 45315814 -143963740 - AluSq SINE Alu -12 301 1 700 274 22 0 chr6 45315845 45316024 -143963530 + L2 LINE L2 3131 3313 0 197 324 122 7 chr6 45316607 45316755 -143962799 + MIR SINE MIR 46 210 -52 2183 92 9 25 chr6 45317629 45317946 -143961608 + AluSx SINE Alu 1 312 0 991 160 112 0 chr6 45318348 45318536 -143961018 + MER3 DNA MER1_type 1 209 0 741 232 189 64 chr6 45318662 45319304 -143960250 + HAL1 LINE L1 1041 1762 -745 338 248 60 53 chr6 45319681 45319814 -143959740 + L1MDa LINE L1 2444 2577 -3963 404 274 75 86 chr6 45319867 45319985 -143959569 + L1MDa LINE L1 2663 2781 -3759 1531 113 108 0 chr6 45319985 45320216 -143959338 + AluSq SINE Alu 1 256 -57 404 274 75 86 chr6 45320216 45320553 -143959001 + L1MDa LINE L1 2781 3113 -3427 807 41 0 0 chr6 45320631 45320728 -143958826 + AluY SINE Alu 1 97 -214 2226 75 10 3 chr6 45320744 45321038 -143958516 + AluY SINE Alu 1 296 -15 841 223 57 10 chr6 45321476 45321669 -143957885 + MER58A DNA MER1_type 8 209 -15 1982 131 3 3 chr6 45321777 45322089 -143957465 + AluSx SINE Alu 1 312 0 409 294 151 5 chr6 45322199 45322417 -143957137 + MIR SINE MIR 13 262 0 2033 134 0 0 chr6 45322685 45322984 -143956570 - AluSg SINE Alu -9 301 3 358 194 0 0 chr6 45323790 45323852 -143955702 - MIR3 SINE MIR -54 154 93 200 287 96 11 chr6 45325389 45325483 -143954071 + L2 LINE L2 3201 3302 -11 863 285 55 10 chr6 45325564 45325855 -143953699 - L3 LINE CR1 -88 1489 1186 526 184 1 85 chr6 45326564 45326661 -143952893 + L1ME1 LINE L1 6044 6148 -186 2190 142 21 12 chr6 45326661 45326993 -143952561 + MER1B DNA MER1_type 3 337 0 526 184 1 85 chr6 45326993 45327055 -143952499 + L1ME1 LINE L1 6148 6333 -1 778 149 58 0 chr6 45327193 45327314 -143952240 - MER1B DNA MER1_type -167 130 3 468 192 4 2 chr6 45327318 45327411 -143952143 - L1ME1 LINE L1 -45 6128 6044 181 220 0 68 chr6 45327595 45327654 -143951900 + L2 LINE L2 2419 2473 -841 2396 68 0 13 chr6 45328037 45328344 -143951210 + AluY SINE Alu 1 303 -8 335 346 39 16 chr6 45328379 45328506 -143951048 + L2 LINE L2 3143 3272 0 1799 159 3 10 chr6 45328518 45328814 -143950740 + AluJb SINE Alu 1 294 -18 271 341 131 5 chr6 45328988 45329202 -143950352 + L1MC4a LINE L1 5684 5924 -1884 892 256 115 50 chr6 45329433 45329605 -143949949 + MLT1I LTR MaLR 1 160 -249 1846 119 30 24 chr6 45329605 45329900 -143949654 - AluJo SINE Alu -14 298 2 892 256 115 50 chr6 45329900 45330110 -143949444 + MLT1I LTR MaLR 160 408 -1 24 0 0 0 chr6 45330126 45330150 -143949404 + AT_rich Low_complexity Low_complexity 1 24 0 272 297 76 62 chr6 45330841 45330986 -143948568 - MIR3 SINE MIR -61 147 1 328 159 48 0 chr6 45331746 45331809 -143947745 - L2 LINE L2 -19 3253 3188 205 353 9 35 chr6 45332000 45332116 -143947438 - L2 LINE L2 -781 2533 2421 372 71 0 0 chr6 45332254 45332310 -143947244 + (TG)n Simple_repeat Simple_repeat 2 57 0 699 191 0 16 chr6 45332311 45332437 -143947117 + MER20 DNA MER1_type 93 216 -3 512 268 82 55 chr6 45332600 45332783 -143946771 - MIR SINE MIR -12 250 63 460 279 142 28 chr6 45333005 45333461 -143946093 + L1ME1 LINE L1 5365 6049 -117 2040 33 4 0 chr6 45333810 45334052 -143945502 + AluSc SINE Alu 67 309 0 398 53 18 0 chr6 45334052 45334109 -143945445 + (TA)n Simple_repeat Simple_repeat 2 59 0 267 313 31 0 chr6 45334659 45334755 -143944799 + L2 LINE L2 3201 3299 -14 494 323 70 22 chr6 45335493 45335722 -143943832 + MIR SINE MIR 12 251 -11 2573 167 45 4 chr6 45335729 45336215 -143943339 + L1MB4 LINE L1 5673 6178 -2 1889 193 92 7 chr6 45336267 45336691 -143942863 + L1ME3A LINE L1 5702 6161 -9 184 321 138 9 chr6 45337921 45338030 -143941524 - MIR3 SINE MIR -76 132 10 870 264 156 38 chr6 45338056 45338499 -143941055 + MLT1J LTR MaLR 4 498 -13 454 294 59 36 chr6 45339044 45339265 -143940289 - MLT1L LTR MaLR -3 612 387 254 227 0 15 chr6 45339519 45339585 -143939969 - Charlie7 DNA MER1_type -91 2521 2457 1022 206 0 0 chr6 45339586 45339761 -143939793 + FAM SINE Alu 1 175 0 469 300 73 0 chr6 45339867 45340017 -143939537 + MIR SINE MIR 4 164 -98 281 278 35 17 chr6 45340260 45340375 -143939179 + MIR SINE MIR 23 139 -69 851 203 101 18 chr6 45340692 45340786 -143938768 - MIR SINE MIR -6 256 171 297 0 0 0 chr6 45340786 45340819 -143938735 + (CAT)n Simple_repeat Simple_repeat 2 34 0 851 203 101 18 chr6 45340819 45340941 -143938613 - MIR SINE MIR -91 171 22 2315 86 3 0 chr6 45340941 45341242 -143938312 - AluSg SINE Alu -8 302 1 608 221 182 65 chr6 45341364 45341538 -143938016 - L1MC4 LINE L1 -149 7893 7741 1908 129 0 7 chr6 45341538 45341816 -143937738 - AluSx SINE Alu -36 276 1 608 221 182 65 chr6 45341816 45341917 -143937637 - L1MC4 LINE L1 -301 7741 7653 2512 126 21 42 chr6 45341917 45342394 -143937160 - L1MB7 LINE L1 -19 6165 5699 608 221 182 65 chr6 45342394 45342501 -143937053 - L1MC4 LINE L1 -389 7653 7465 299 240 13 13 chr6 45343255 45343330 -143936224 + MIR SINE MIR 73 147 -115 625 304 52 35 chr6 45343489 45343719 -143935835 + MIR SINE MIR 14 247 -15 276 246 46 0 chr6 45344286 45344351 -143935203 + MLT1J LTR MaLR 1 68 -443 685 181 87 0 chr6 45344367 45344516 -143935038 - MER20 DNA MER1_type -1 218 57 2222 99 3 0 chr6 45344517 45344820 -143934734 + AluSx SINE Alu 1 304 -8 1342 265 29 27 chr6 45344847 45345259 -143934295 + MLT1J LTR MaLR 99 511 0 541 299 90 10 chr6 45345334 45345535 -143934019 - MIR SINE MIR 0 262 46 304 108 62 0 chr6 45346961 45347026 -143932528 + (ATGGTG)n Simple_repeat Simple_repeat 3 71 0 * 947 142 0 9 chr6 45347011 45347238 -143932316 + (TGG)n Simple_repeat Simple_repeat 1 224 0 1853 82 12 0 chr6 45397238 45397482 -143882072 + AluSg SINE Alu 59 305 -5 990 181 6 0 chr6 45397482 45397659 -143881895 + AluSg/x SINE Alu 134 311 -1 2053 78 0 109 chr6 45398618 45398965 -143880589 - AluSg SINE Alu -1 309 1 1093 236 5 0 chr6 45399069 45399277 -143880277 - MIR SINE MIR -21 241 33 25 0 0 0 chr6 45399643 45399668 -143879886 + AT_rich Low_complexity Low_complexity 1 25 0 634 127 103 56 chr6 45399677 45399803 -143879751 + AluSq/x SINE Alu 5 136 -177 22 0 0 0 chr6 45400121 45400143 -143879411 + GC_rich Low_complexity Low_complexity 1 22 0 221 279 13 57 chr6 45401231 45401389 -143878165 + (CAGAGA)n Simple_repeat Simple_repeat 6 156 0 563 105 0 0 chr6 45403098 45403184 -143876370 - L1MB4 LINE L1 -1 6179 6094 255 240 248 16 chr6 45404961 45405082 -143874472 - MIR3 SINE MIR -21 187 39 24 53 0 0 chr6 45406819 45406857 -143872697 + GC_rich Low_complexity Low_complexity 1 38 0 241 279 41 23 chr6 45406899 45407071 -143872483 + (CGGGG)n Simple_repeat Simple_repeat 5 179 0 950 206 94 14 chr6 45409233 45409456 -143870098 + MIR SINE MIR 13 253 -9 228 282 39 0 chr6 45409490 45409568 -143869986 + MIR3 SINE MIR 76 156 -52 184 258 32 16 chr6 45410586 45410648 -143868906 + L2 LINE L2 3029 3091 -181 996 223 133 62 chr6 45411115 45411135 -143868419 + L2 LINE L2 2696 2713 -600 1486 171 43 46 chr6 45411135 45411439 -143868115 + AluJb SINE Alu 2 304 -8 2113 134 0 0 chr6 45411439 45411746 -143867808 + AluSx SINE Alu 1 307 -5 996 223 133 62 chr6 45411746 45412065 -143867489 + L2 LINE L2 2713 3008 -305 2121 118 0 16 chr6 45412065 45412098 -143867456 - AluSg SINE Alu 0 310 278 198 0 0 0 chr6 45412098 45412120 -143867434 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2121 118 0 16 chr6 45412120 45412400 -143867154 - AluSg SINE Alu -32 278 2 1995 112 3 16 chr6 45412404 45412708 -143866846 - AluSq SINE Alu -13 300 1 996 223 133 62 chr6 45412708 45412837 -143866717 + L2 LINE L2 3010 3128 -185 2356 49 0 3 chr6 45412837 45413147 -143866407 - AluY SINE Alu 0 309 1 996 223 133 62 chr6 45413147 45413246 -143866308 + L2 LINE L2 3128 3310 -3 1687 126 0 89 chr6 45413947 45414273 -143865281 + AluJb SINE Alu 5 301 -11 622 255 17 81 chr6 45414290 45414467 -143865087 + MIR SINE MIR 41 201 -61 2214 78 3 23 chr6 45414467 45414775 -143864779 - AluY SINE Alu -9 302 1 622 255 17 81 chr6 45414775 45414832 -143864722 + MIR SINE MIR 201 260 -2 2011 138 0 3 chr6 45414842 45415146 -143864408 - AluSx SINE Alu -9 303 1 374 282 117 0 chr6 45415271 45415374 -143864180 - L2 LINE L2 0 3313 3199 323 213 43 32 chr6 45415381 45415475 -143864079 + MER5A DNA MER1_type 9 103 -86 497 257 68 0 chr6 45416336 45416484 -143863070 + MIR SINE MIR 7 164 -98 664 235 59 0 chr6 45416540 45416693 -143862861 - MIR SINE MIR -41 221 60 2131 201 56 71 chr6 45416894 45417427 -143862127 + MLT1F LTR MaLR 18 542 0 1913 129 3 35 chr6 45417713 45418030 -143861524 - AluSq SINE Alu -6 307 1 196 330 55 33 chr6 45419342 45419433 -143860121 - MIR SINE MIR -138 124 32 1237 91 23 0 chr6 45419965 45420140 -143859414 - AluSg/x SINE Alu -10 300 122 321 159 0 0 chr6 45420858 45420921 -143858633 + CT-rich Low_complexity Low_complexity 2 64 0 256 229 114 69 chr6 45421265 45421396 -143858158 + MIR SINE MIR 33 169 -93 267 31 0 0 chr6 45421886 45421923 -143857631 + (CCCCAA)n Simple_repeat Simple_repeat 1 69 0 267 31 0 0 chr6 45421923 45421955 -143857599 + (CCCCAA)n Simple_repeat Simple_repeat 3 34 0 230 156 0 22 chr6 45422627 45422672 -143856882 + C-rich Low_complexity Low_complexity 3 46 0 2029 125 0 22 chr6 45423136 45423271 -143856283 + AluSq SINE Alu 1 138 -175 2142 85 4 0 chr6 45423271 45423575 -143855979 + AluY SINE Alu 1 305 0 2029 125 0 22 chr6 45423575 45423751 -143855803 + AluSq SINE Alu 138 306 -7 445 214 0 0 chr6 45423812 45423901 -143855653 - AluSp/q SINE Alu -4 309 221 351 269 140 25 chr6 45423952 45424223 -143855331 + L2 LINE L2 2727 3020 -252 1644 169 44 0 chr6 45424363 45424658 -143854896 + AluJo SINE Alu 1 308 -4 662 285 44 93 chr6 45424708 45424990 -143854564 - L2 LINE L2 -6 3307 3013 1859 121 44 0 chr6 45424990 45425287 -143854267 - AluSx SINE Alu 0 309 1 662 285 44 93 chr6 45425287 45425299 -143854255 - L2 LINE L2 -300 3013 3002 2100 98 0 54 chr6 45425299 45425616 -143853938 - AluSq SINE Alu -13 300 1 662 285 44 93 chr6 45425616 45425650 -143853904 - L2 LINE L2 -311 3002 2968 2227 94 0 7 chr6 45425650 45425948 -143853606 - AluSq SINE Alu -17 296 1 662 285 44 93 chr6 45425948 45426044 -143853510 - L2 LINE L2 -345 2968 2901 489 244 65 58 chr6 45426044 45426159 -143853395 + Zaphod DNA AcHobo 1 114 -771 2318 91 3 0 chr6 45426159 45426467 -143853087 + AluSq SINE Alu 5 313 0 489 244 65 58 chr6 45426467 45426608 -143852946 + Zaphod DNA AcHobo 114 257 -628 932 158 24 12 chr6 45426608 45426772 -143852782 + AluJb SINE Alu 136 301 -11 2459 208 123 26 chr6 45426775 45427123 -143852431 + Zaphod DNA AcHobo 252 565 -3466 1832 143 3 17 chr6 45427123 45427424 -143852130 - AluJb SINE Alu -15 297 1 2459 208 123 26 chr6 45427424 45427535 -143852019 + Zaphod DNA AcHobo 565 664 -3367 2237 93 6 13 chr6 45427535 45427847 -143851707 + AluSx SINE Alu 1 310 -2 2459 208 123 26 chr6 45427847 45428118 -143851436 + Zaphod DNA AcHobo 664 1054 -2977 2224 99 3 3 chr6 45428129 45428442 -143851112 + AluSq SINE Alu 1 313 0 546 272 12 25 chr6 45428652 45428711 -143850843 + MARNA DNA Mariner 208 266 -320 891 132 0 22 chr6 45428711 45428847 -143850707 + AluJo SINE Alu 1 133 -169 546 272 12 25 chr6 45428847 45428949 -143850605 + MARNA DNA Mariner 266 367 -219 350 180 0 0 chr6 45429047 45429108 -143850446 - MIR SINE MIR -139 123 63 449 323 12 24 chr6 45429190 45429357 -143850197 + MIR SINE MIR 94 258 -4 187 309 18 0 chr6 45429347 45429402 -143850152 - MIR SINE MIR -94 168 113 * 218 253 53 21 chr6 45429870 45429965 -143849589 - MIR SINE MIR -141 121 24 257 232 134 24 chr6 45430029 45430111 -143849443 - L2 LINE L2 -41 3231 3141 2208 86 7 3 chr6 45430180 45430484 -143849070 + AluSq SINE Alu 5 309 -4 1899 159 0 3 chr6 45430494 45430789 -143848765 + AluSx SINE Alu 1 294 -18 434 216 21 10 chr6 45431298 45431395 -143848159 - L2 LINE L2 -5 3308 3211 334 178 0 41 chr6 45431753 45431826 -143847728 - MIR SINE MIR -13 249 180 970 180 0 6 chr6 45431826 45432004 -143847550 + AluJo SINE Alu 128 304 -8 196 333 58 0 chr6 45432006 45432093 -143847461 - MIR SINE MIR -85 177 86 455 261 150 0 chr6 45432307 45432460 -143847094 + MER5B DNA MER1_type 1 176 -2 543 306 35 12 chr6 45432507 45432677 -143846877 + MIR SINE MIR 44 217 -45 860 101 8 31 chr6 45433348 45433477 -143846077 + FLAM_C SINE Alu 1 126 -7 2147 104 7 0 chr6 45433483 45433780 -143845774 + AluSx SINE Alu 1 299 -13 238 226 48 0 chr6 45433816 45433878 -143845676 - MIR SINE MIR -67 141 77 2914 121 50 25 chr6 45433956 45434014 -143845540 + L1MB3 LINE L1 5612 5667 -516 2380 47 0 13 chr6 45434014 45434312 -143845242 + AluY SINE Alu 1 294 -17 2914 121 50 25 chr6 45434312 45434772 -143844782 + L1MB3 LINE L1 5667 6143 -40 737 152 8 32 chr6 45434772 45434897 -143844657 + AluJb SINE Alu 2 123 -189 331 85 0 0 chr6 45434897 45434944 -143844610 + L1MB4 LINE L1 6126 6172 -8 378 0 0 0 chr6 45434983 45435025 -143844529 + (CA)n Simple_repeat Simple_repeat 2 43 0 2311 86 0 7 chr6 45435048 45435351 -143844203 - AluSx SINE Alu -11 301 1 516 140 0 30 chr6 45435357 45435457 -143844097 - AluJ/FRAM SINE Alu 0 312 216 763 153 0 0 chr6 45435477 45435623 -143843931 - FLAM_C SINE Alu 0 146 1 2184 113 3 0 chr6 45435812 45436123 -143843431 + AluSx SINE Alu 1 312 0 2104 99 0 0 chr6 45436286 45436592 -143842962 - AluY SINE Alu 0 306 1 1545 153 0 16 chr6 45436764 45437013 -143842541 + AluJb SINE Alu 1 245 -67 1791 133 46 7 chr6 45437269 45437554 -143842000 - AluJb SINE Alu -16 296 1 347 248 203 0 chr6 45437696 45437849 -143841705 + L2 LINE L2 780 963 -2351 1178 318 51 42 chr6 45437850 45438344 -143841210 + MLT1K LTR MaLR 17 514 -74 2153 99 0 0 chr6 45438395 45438703 -143840851 - AluSq SINE Alu 0 308 1 2360 86 0 3 chr6 45438728 45439041 -143840513 - AluSx SINE Alu 0 312 1 2334 67 3 0 chr6 45439052 45439349 -143840205 - AluSp SINE Alu -15 298 1 1757 175 7 0 chr6 45439432 45439741 -143839813 + AluJb SINE Alu 1 311 -1 639 229 92 25 chr6 45439772 45440012 -143839542 - L1ME3A LINE L1 -10 6160 5905 29 0 0 0 chr6 45440012 45440041 -143839513 + AT_rich Low_complexity Low_complexity 1 29 0 1015 158 6 0 chr6 45440062 45440227 -143839327 - FRAM SINE Alu -12 164 1 2201 101 3 13 chr6 45440237 45440553 -143839001 - AluSp SINE Alu 0 313 1 1623 191 27 0 chr6 45440560 45440859 -143838695 - AluJb SINE Alu 0 312 6 386 263 81 31 chr6 45440863 45441023 -143838531 - L1M4 LINE L1 -1092 5054 4887 2016 123 7 0 chr6 45441034 45441351 -143838203 - AluSx SINE Alu 0 312 1 1963 118 4 0 chr6 45441451 45441730 -143837824 + AluSx SINE Alu 1 280 -32 291 28 0 0 chr6 45441730 45441766 -143837788 + (TAA)n Simple_repeat Simple_repeat 1 36 0 2119 124 3 0 chr6 45441778 45442084 -143837470 + AluSx SINE Alu 1 307 -5 240 252 61 10 chr6 45442087 45442190 -143837364 - MER5B DNA MER1_type -56 133 20 181 307 193 9 chr6 45442179 45442407 -143837147 + L2 LINE L2 1554 1823 -1491 * 222 37 0 0 chr6 45442551 45442578 -143836976 + (TG)n Simple_repeat Simple_repeat 2 28 0 1774 147 0 48 chr6 45442579 45442892 -143836662 - AluJo SINE Alu -14 298 1 499 320 50 18 chr6 45442914 45443136 -143836418 - L1 LINE L1 -834 5312 5084 2085 108 3 0 chr6 45443145 45443432 -143836122 + AluSx SINE Alu 1 288 -24 237 307 0 78 chr6 45443462 45443591 -143835963 - L1 LINE L1 -1128 5018 4901 1462 191 30 20 chr6 45443591 45443894 -143835660 + AluJo SINE Alu 1 306 -6 237 307 0 78 chr6 45443894 45443917 -143835637 - L1 LINE L1 -1245 4901 4878 870 196 6 18 chr6 45443929 45444097 -143835457 - FRAM SINE Alu 0 166 1 1043 245 217 25 chr6 45444376 45444681 -143834873 + L2 LINE L2 40 285 -3029 180 0 0 0 chr6 45444681 45444701 -143834853 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 1043 245 217 25 chr6 45444701 45444880 -143834674 + L2 LINE L2 285 428 -2886 1454 161 68 31 chr6 45444880 45445172 -143834382 + AluJo SINE Alu 1 303 -9 1043 245 217 25 chr6 45445172 45445332 -143834222 + L2 LINE L2 428 809 -2505 1137 223 93 71 chr6 45445586 45445886 -143833668 - MLT1H LTR MaLR -37 512 195 1853 134 3 52 chr6 45445886 45446215 -143833339 + AluSq SINE Alu 1 313 0 1137 223 93 71 chr6 45446215 45446408 -143833146 - MLT1H LTR MaLR -354 195 8 3321 304 54 66 chr6 45446412 45446711 -143832843 + ERVL LTR ERVL 1139 1440 -4324 2132 115 0 7 chr6 45446711 45447015 -143832539 + AluSx SINE Alu 1 302 -10 3321 304 54 66 chr6 45447015 45447072 -143832482 + ERVL LTR ERVL 1440 1496 -4268 2381 75 7 0 chr6 45447072 45447377 -143832177 - AluSp SINE Alu -6 307 1 3321 304 54 66 chr6 45447377 45448059 -143831495 + ERVL LTR ERVL 1496 2185 -3579 1863 145 3 26 chr6 45448059 45448362 -143831192 + AluSx SINE Alu 1 296 -16 2327 99 0 3 chr6 45448363 45448676 -143830878 + AluSx SINE Alu 1 312 0 3321 304 54 66 chr6 45448676 45448884 -143830670 + ERVL LTR ERVL 2185 2394 -3370 1606 159 15 4 chr6 45448884 45449155 -143830399 - AluJo SINE Alu -11 301 28 3321 304 54 66 chr6 45449155 45449649 -143829905 + ERVL LTR ERVL 2394 2863 -2901 246 278 0 0 chr6 45449761 45449815 -143829739 + MER58A DNA MER1_type 1 54 -170 3036 171 31 76 chr6 45450021 45450446 -143829108 - L1M4 LINE L1 -1059 5087 4713 2013 148 0 0 chr6 45450446 45450749 -143828805 - AluSx SINE Alu -9 303 1 3036 171 31 76 chr6 45450749 45451122 -143828432 - L1M4 LINE L1 -1433 4713 4325 771 131 0 0 chr6 45451124 45451231 -143828323 - FLAM_A SINE Alu -12 130 24 320 215 38 0 chr6 45451253 45451332 -143828222 - L1M4 LINE L1 -1814 4332 4251 478 268 74 16 chr6 45451341 45451465 -143828089 + MLT1J LTR MaLR 65 205 -306 2295 87 0 3 chr6 45451465 45451765 -143827789 - AluSx SINE Alu -13 299 1 478 268 74 16 chr6 45451765 45451830 -143827724 + MLT1J LTR MaLR 205 265 -246 555 158 79 7 chr6 45452415 45452431 -143827123 - L1ME2 LINE L1 -271 5893 5880 2304 86 0 9 chr6 45452431 45452746 -143826808 - AluSx SINE Alu 0 312 1 555 158 79 7 chr6 45452746 45452881 -143826673 - L1ME2 LINE L1 -284 5880 5731 2174 114 0 3 chr6 45452889 45453197 -143826357 - AluSx SINE Alu -5 307 1 812 165 8 8 chr6 45453197 45453330 -143826224 - AluJo SINE Alu -178 134 2 658 249 36 6 chr6 45453413 45453578 -143825976 + MER5B DNA MER1_type 9 178 0 2113 103 3 13 chr6 45453816 45454117 -143825437 - AluSx SINE Alu -9 303 6 202 192 14 14 chr6 45454931 45455004 -143824550 + G-rich Low_complexity Low_complexity 3 75 0 1766 174 103 166 chr6 45455475 45455744 -143823810 + MER97a DNA MER1_type? 8 292 -602 2083 146 3 0 chr6 45455744 45456053 -143823501 - AluSx SINE Alu -2 310 1 1766 174 103 166 chr6 45456053 45456093 -143823461 + MER97a DNA MER1_type? 292 333 -561 1149 87 6 12 chr6 45456093 45456254 -143823300 + L1PA10 LINE L1 6003 6162 -6 1766 174 103 166 chr6 45456254 45456591 -143822963 + MER97a DNA MER1_type? 333 582 -312 647 172 0 97 chr6 45456591 45456684 -143822870 - FLAM_A SINE Alu -169 133 57 2207 139 3 0 chr6 45456684 45456994 -143822560 - AluSx SINE Alu -1 311 1 647 172 0 97 chr6 45456994 45457045 -143822509 - FLAM_A SINE Alu -245 57 3 1766 174 103 166 chr6 45457045 45457318 -143822236 + MER97a DNA MER1_type? 582 871 -23 264 330 92 23 chr6 45457413 45457889 -143821665 - HAL1b LINE L1 -708 640 102 1038 194 26 133 chr6 45458082 45458268 -143821286 - AluYb8 SINE Alu 0 308 104 2090 119 0 14 chr6 45458268 45458561 -143820993 - AluSg SINE Alu -21 289 1 1038 194 26 133 chr6 45458561 45458584 -143820970 - AluYb8 SINE Alu -204 104 80 1674 182 10 10 chr6 45458584 45458875 -143820679 - AluJo SINE Alu -21 291 1 1038 194 26 133 chr6 45458875 45459009 -143820545 - AluYb8 SINE Alu -228 80 1 2273 116 0 6 chr6 45459021 45459332 -143820222 - AluSx SINE Alu -2 310 2 26 0 0 0 chr6 45459372 45459398 -143820156 + AT_rich Low_complexity Low_complexity 1 26 0 688 192 0 60 chr6 45459492 45459643 -143819911 - FLAM_C SINE Alu 0 143 2 4177 205 62 11 chr6 45459754 45460226 -143819328 + L1M4 LINE L1 714 1161 -5485 663 144 64 40 chr6 45460226 45460351 -143819203 + FLAM_A SINE Alu 1 128 -5 4177 205 62 11 chr6 45460351 45460845 -143818709 + L1M4 LINE L1 1161 1721 -4925 1954 140 7 10 chr6 45460845 45460980 -143818574 + AluSx SINE Alu 1 135 -177 2373 91 0 35 chr6 45460980 45461299 -143818255 + AluSg1 SINE Alu 1 308 -1 1954 140 7 10 chr6 45461299 45461455 -143818099 + AluSx SINE Alu 135 291 -21 4177 205 62 11 chr6 45461455 45461575 -143817979 + L1M4 LINE L1 1721 1833 -4813 255 31 0 0 chr6 45461577 45461609 -143817945 + L1M4 LINE L1 1911 1942 -4704 252 0 0 0 chr6 45461623 45461651 -143817903 + (A)n Simple_repeat Simple_repeat 1 28 0 982 193 11 149 chr6 45461651 45461999 -143817555 + AluJo SINE Alu 2 301 -1 760 234 5 0 chr6 45462005 45462210 -143817344 + L1 LINE L1 3028 3233 -2913 1000 245 55 36 chr6 45462263 45462751 -143816803 - MLT1G1 LTR MaLR -4 545 1 2240 99 3 0 chr6 45462869 45463174 -143816380 - AluSp SINE Alu 0 306 1 416 263 9 0 chr6 45463273 45463387 -143816167 + MIR SINE MIR 9 123 -139 2174 125 3 0 chr6 45463677 45463973 -143815581 - AluSx SINE Alu -15 297 1 227 303 161 7 chr6 45464088 45464243 -143815311 + L1 LINE L1 4800 4978 -1168 2237 121 20 0 chr6 45464297 45464602 -143814952 + AluSx SINE Alu 1 311 -1 516 275 115 69 chr6 45464602 45465107 -143814447 + HAL1 LINE L1 11 538 -1969 320 224 0 13 chr6 45465133 45465209 -143814345 + HAL1 LINE L1 650 724 -1783 847 141 0 15 chr6 45465225 45465360 -143814194 - FLAM_C SINE Alu 0 133 1 496 304 110 13 chr6 45465373 45465724 -143813830 + L1P3 LINE L1 5377 5772 -382 1761 150 11 7 chr6 45466227 45466501 -143813053 - AluJo SINE Alu -31 281 7 216 0 0 0 chr6 45466507 45466531 -143813023 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 2256 86 0 40 chr6 45466543 45466846 -143812708 - AluY SINE Alu -20 291 1 692 213 0 15 chr6 45466848 45466984 -143812570 - AluJo SINE Alu -178 134 1 732 264 207 20 chr6 45467051 45467505 -143812049 - LTR67 LTR ERVL -12 545 7 2376 108 0 6 chr6 45467506 45467821 -143811733 + AluSq SINE Alu 1 313 0 2048 119 7 10 chr6 45468046 45468349 -143811205 + AluJo SINE Alu 1 302 -10 2316 107 7 13 chr6 45468733 45469042 -143810512 + AluSx SINE Alu 1 307 -5 2096 137 3 0 chr6 45469219 45469519 -143810035 - AluJo SINE Alu -11 301 1 8225 51 11 2 chr6 45469628 45470626 -143808928 - LTR13 LTR ERVK 0 1007 1 2183 166 21 30 chr6 45470750 45470787 -143808767 + L1M3 LINE L1 5291 5327 -844 1591 199 34 0 chr6 45470787 45471078 -143808476 + AluJo SINE Alu 2 302 -10 2183 166 21 30 chr6 45471078 45471468 -143808086 + L1M3 LINE L1 5327 5714 -457 5648 274 70 67 chr6 45471471 45474412 -143805142 - LTR10B-int LTR ERV1 -147 6502 3551 3039 239 60 23 chr6 45474391 45475613 -143803941 - LTR10B-int LTR ERV1 -4135 2514 986 * 1004 247 88 47 chr6 45475679 45476047 -143803507 - LTR10B-int LTR ERV1 -6768 1017 588 2063 70 0 37 chr6 45476047 45476318 -143803236 - AluY SINE Alu -9 302 42 1004 247 88 47 chr6 45476318 45476414 -143803140 - LTR10B-int LTR ERV1 -7197 588 497 1426 219 80 6 chr6 45476414 45476739 -143802815 - LTR10B-int LTR ERV1 -6297 352 4 3411 112 22 16 chr6 45476739 45477240 -143802314 - LTR10B LTR ERV1 0 505 2 1467 101 48 10 chr6 45477240 45477448 -143802106 + AluSg/x SINE Alu 82 297 -13 308 158 0 0 chr6 45477449 45477506 -143802048 + L1MB2 LINE L1 6112 6168 -3 2356 84 0 0 chr6 45478091 45478378 -143801176 - AluY SINE Alu -24 287 1 1941 154 0 3 chr6 45478380 45478679 -143800875 - AluJo SINE Alu -14 298 1 2342 97 0 0 chr6 45479906 45480205 -143799349 - AluY SINE Alu -11 300 2 2335 101 0 3 chr6 45480508 45480814 -143798740 + AluSq SINE Alu 1 305 -8 480 239 51 0 chr6 45480842 45480959 -143798595 + MLT2E LTR ERVL 19 141 -487 1813 153 3 33 chr6 45480961 45481268 -143798286 - AluJo SINE Alu -14 298 1 1879 150 18 4 chr6 45482254 45482534 -143797020 - AluJb SINE Alu -28 284 1 2357 112 7 0 chr6 45483094 45483398 -143796156 - AluSx SINE Alu -6 306 1 22 35 0 0 chr6 45484208 45484237 -143795317 + AT_rich Low_complexity Low_complexity 1 29 0 1595 190 18 7 chr6 45486299 45486578 -143792976 + AluJb SINE Alu 1 282 -30 24 0 0 0 chr6 45486583 45486607 -143792947 + GC_rich Low_complexity Low_complexity 1 24 0 509 83 56 0 chr6 45486608 45486680 -143792874 - MADE1 DNA Mariner -4 76 1 528 299 65 53 chr6 45487289 45487683 -143791871 + L1M4 LINE L1 4559 4962 -1184 2253 99 7 3 chr6 45487683 45487985 -143791569 + AluSx SINE Alu 1 303 -9 528 299 65 53 chr6 45487985 45488065 -143791489 + L1M4 LINE L1 4962 5039 -1107 28 29 0 0 chr6 45488066 45488101 -143791453 + AT_rich Low_complexity Low_complexity 1 35 0 852 120 15 15 chr6 45488106 45488239 -143791315 - FRAM SINE Alu -23 153 21 2050 141 3 3 chr6 45488396 45488700 -143790854 + AluSx SINE Alu 2 305 -7 948 193 0 59 chr6 45488801 45489050 -143790504 + AluJo SINE Alu 2 296 -16 22 0 0 0 chr6 45489681 45489703 -143789851 + AT_rich Low_complexity Low_complexity 1 22 0 2322 89 0 13 chr6 45490436 45490750 -143788804 - AluSg SINE Alu 0 310 1 866 206 6 12 chr6 45490899 45491059 -143788495 - MER58A DNA MER1_type 0 159 1 330 65 48 0 chr6 45491151 45491213 -143788341 + (TA)n Simple_repeat Simple_repeat 2 66 0 1915 112 65 0 chr6 45491234 45491494 -143788060 + AluSx SINE Alu 1 277 -35 315 0 0 0 chr6 45491497 45491532 -143788022 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1415 162 63 86 chr6 45492206 45492589 -143786965 + MLT1A2 LTR MaLR 1 374 0 975 148 0 0 chr6 45492854 45492996 -143786558 + FRAM SINE Alu 5 146 -30 1358 154 23 5 chr6 45493463 45493677 -143785877 + MER20 DNA MER1_type 2 219 0 194 236 83 28 chr6 45495336 45495408 -143784146 - MIR3 SINE MIR -6 202 127 21 57 0 0 chr6 45495536 45495571 -143783983 + AT_rich Low_complexity Low_complexity 1 35 0 311 191 191 43 chr6 45495588 45495703 -143783851 + MER112 DNA MER1_type 8 139 -121 842 150 0 0 chr6 45496394 45496527 -143783027 + FLAM_C SINE Alu 1 133 0 279 301 16 57 chr6 45496605 45496728 -143782826 - L2 LINE L2 -5 3267 3150 2259 72 43 4 chr6 45497921 45498222 -143781332 - AluSp SINE Alu 0 314 3 1930 161 0 16 chr6 45498509 45498813 -143780741 - AluJb SINE Alu -11 301 3 776 123 25 16 chr6 45498826 45498948 -143780606 - FLAM_C SINE Alu -18 125 3 372 191 0 0 chr6 45498949 45499038 -143780516 + (TA)n Simple_repeat Simple_repeat 2 90 0 2263 113 0 0 chr6 45499038 45499338 -143780216 - AluSx SINE Alu -12 300 1 2000 138 0 10 chr6 45499925 45500222 -143779332 + AluJo SINE Alu 1 294 -18 231 211 125 67 chr6 45501927 45502031 -143777523 + L2 LINE L2 3187 3296 -17 1057 194 27 40 chr6 45502613 45502835 -143776719 + MER20 DNA MER1_type 1 219 0 193 255 196 29 chr6 45503299 45503401 -143776153 - MIR SINE MIR -112 150 32 2295 83 10 13 chr6 45503462 45503764 -143775790 - AluSx SINE Alu -11 301 1 1644 151 52 11 chr6 45503981 45504252 -143775302 + AluJo SINE Alu 1 282 -30 222 300 22 11 chr6 45504510 45504600 -143774954 + (CATA)n Simple_repeat Simple_repeat 2 92 0 409 262 56 16 chr6 45504939 45505065 -143774489 - MIR SINE MIR -52 210 80 2029 131 3 13 chr6 45505374 45505672 -143773882 + AluJb SINE Alu 1 295 -17 2159 109 3 0 chr6 45505982 45506267 -143773287 + AluSx SINE Alu 1 286 -26 2099 117 0 7 chr6 45508142 45508432 -143771122 - AluSx SINE Alu -24 288 1 2109 102 16 23 chr6 45508600 45508930 -143770624 + AluSx SINE Alu 1 312 0 218 146 167 0 chr6 45509141 45509189 -143770365 + MIR3 SINE MIR 150 205 -3 441 53 0 18 chr6 45509404 45509461 -143770093 - U6 snRNA snRNA -51 56 1 1921 176 58 0 chr6 45509790 45510119 -143769435 - MER7A DNA MER2_type 0 346 1 1004 155 12 6 chr6 45510175 45510336 -143769218 + FRAM SINE Alu 1 157 -19 21 0 0 0 chr6 45511578 45511599 -143767955 + AT_rich Low_complexity Low_complexity 1 21 0 488 275 66 6 chr6 45512874 45513056 -143766498 + MIR SINE MIR 33 225 -37 198 0 0 0 chr6 45513058 45513080 -143766474 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 193 226 32 65 chr6 45513308 45513370 -143766184 + L2 LINE L2 3211 3270 -2 2037 114 0 54 chr6 45513600 45513915 -143765639 - AluSx SINE Alu -14 298 1 1696 163 3 10 chr6 45513917 45514218 -143765336 - AluJo SINE Alu -13 299 1 242 311 18 18 chr6 45514511 45514675 -143764879 - L1M4 LINE L1 -3863 2283 2120 2394 59 24 0 chr6 45514702 45514992 -143764562 - AluY SINE Alu -14 297 1 1181 169 14 86 chr6 45515187 45515293 -143764261 + L1 LINE L1 3916 4028 -2118 2000 159 0 6 chr6 45515293 45515607 -143763947 - AluJo SINE Alu 0 312 1 1181 169 14 86 chr6 45515607 45515790 -143763764 + L1 LINE L1 4028 4184 -1962 * 2460 148 81 31 chr6 45515786 45516285 -143763269 + L1PA16 LINE L1 4950 5479 -687 2583 60 0 10 chr6 45516285 45516599 -143762955 + AluY SINE Alu 1 311 0 2460 148 81 31 chr6 45516599 45516848 -143762706 + L1PA16 LINE L1 5479 5714 -452 2165 116 10 0 chr6 45516854 45517147 -143762407 - AluSx SINE Alu -16 296 1 1396 170 107 0 chr6 45517149 45517402 -143762152 - AluJo SINE Alu -21 291 12 488 98 43 8 chr6 45517420 45517498 -143762056 + L1PA16 LINE L1 5706 5781 -373 2217 151 40 8 chr6 45517908 45518279 -143761275 + L1PA16 LINE L1 5769 6151 -15 1418 180 33 33 chr6 45518320 45518620 -143760934 + AluJo SINE Alu 1 300 -12 1647 147 71 4 chr6 45518700 45518997 -143760557 - AluSx SINE Alu 0 315 1 431 284 152 59 chr6 45519208 45519871 -143759683 - HAL1 LINE L1 -875 1632 908 229 281 53 0 chr6 45520041 45520098 -143759456 - L2 LINE L2 -8 3305 3246 2532 68 0 7 chr6 45520194 45520501 -143759053 + AluY SINE Alu 1 305 -6 201 71 0 89 chr6 45520564 45520620 -143758934 + (TTTTA)n Simple_repeat Simple_repeat 1 51 0 696 167 81 63 chr6 45520677 45520851 -143758703 - MER5B DNA MER1_type -1 177 1 287 167 33 0 chr6 45521958 45522018 -143757536 - L2 LINE L2 -787 2527 2466 1860 132 4 0 chr6 45522018 45522276 -143757278 + AluSx SINE Alu 1 259 -53 2531 109 21 21 chr6 45522440 45522815 -143756739 - THE1C LTR MaLR 0 375 1 327 300 0 20 chr6 45522841 45522941 -143756613 - MIR SINE MIR -112 150 53 2262 112 0 3 chr6 45523113 45523425 -143756129 - AluSx SINE Alu -1 311 1 1836 173 6 16 chr6 45523790 45524103 -143755451 - AluJo SINE Alu -2 310 1 1892 184 116 66 chr6 45524152 45524752 -143754802 + L1MD3 LINE L1 5980 6549 -1446 2144 106 0 3 chr6 45524752 45525036 -143754518 + AluSg SINE Alu 1 283 -27 1892 184 116 66 chr6 45525036 45525065 -143754489 + L1MD3 LINE L1 6549 6575 -1420 279 0 0 0 chr6 45525065 45525096 -143754458 + (CA)n Simple_repeat Simple_repeat 2 32 0 1892 184 116 66 chr6 45525096 45525940 -143753614 + L1MD3 LINE L1 6575 7743 -252 2272 117 0 7 chr6 45525940 45526249 -143753305 + AluSx SINE Alu 1 307 -5 1892 184 116 66 chr6 45526249 45526505 -143753049 + L1MD3 LINE L1 7743 7985 -10 24 0 0 0 chr6 45526653 45526677 -143752877 + AT_rich Low_complexity Low_complexity 1 24 0 370 274 96 13 chr6 45526852 45527009 -143752545 - MIR3 SINE MIR -10 198 29 1101 187 0 6 chr6 45527231 45527402 -143752152 - FAM SINE Alu -5 170 1 257 395 89 0 chr6 45527558 45527715 -143751839 - L2 LINE L2 0 3272 3102 184 133 33 0 chr6 45527846 45527876 -143751678 - MIR SINE MIR -138 70 40 418 264 117 6 chr6 45527975 45528138 -143751416 + MIR SINE MIR 50 230 -32 28 29 0 0 chr6 45528238 45528273 -143751281 + AT_rich Low_complexity Low_complexity 1 35 0 1624 179 10 24 chr6 45528289 45528585 -143750969 - AluJb SINE Alu -20 292 1 2198 110 0 3 chr6 45528613 45528905 -143750649 - AluSx SINE Alu -21 291 1 22 0 0 0 chr6 45530330 45530352 -143749202 + AT_rich Low_complexity Low_complexity 1 22 0 1437 137 11 102 chr6 45530385 45530669 -143748885 + AluJo SINE Alu 30 287 -25 2288 93 17 0 chr6 45531254 45531545 -143748009 + AluSx SINE Alu 5 300 -12 1637 130 29 76 chr6 45531597 45531912 -143747642 + AluJb SINE Alu 1 300 -12 1601 199 0 13 chr6 45532136 45532437 -143747117 + AluJo SINE Alu 1 297 -15 21 0 0 0 chr6 45532563 45532584 -143746970 + AT_rich Low_complexity Low_complexity 1 21 0 789 248 12 79 chr6 45532683 45532870 -143746684 + MIR SINE MIR 12 179 -83 2394 76 0 0 chr6 45532870 45533172 -143746382 + AluY SINE Alu 1 302 -9 789 248 12 79 chr6 45533172 45533238 -143746316 + MIR SINE MIR 179 248 -14 299 256 128 30 chr6 45533325 45533458 -143746096 - L1MC/D LINE L1 -2089 5719 5574 1481 166 14 62 chr6 45533482 45533772 -143745782 - AluJb SINE Alu -17 295 20 239 184 0 0 chr6 45533784 45533822 -143745732 - Alu SINE Alu -176 126 89 917 203 25 10 chr6 45533825 45534022 -143745532 - AluJo SINE Alu -92 220 21 833 264 19 5 chr6 45534053 45534265 -143745289 + MER90 LTR ERV1 1 215 -399 891 109 0 0 chr6 45534265 45534384 -143745170 + AluSg/x SINE Alu 137 255 -57 1843 154 56 30 chr6 45534416 45534811 -143744743 + MER90 LTR ERV1 210 614 0 282 159 0 0 chr6 45534944 45534988 -143744566 - L1ME LINE L1 -461 5660 5617 2110 135 0 3 chr6 45534998 45535294 -143744260 - AluSx SINE Alu -17 295 1 2456 59 3 0 chr6 45535365 45535654 -143743900 + AluY SINE Alu 1 290 -21 2391 57 0 0 chr6 45535677 45535988 -143743566 - AluY SINE Alu 0 311 1 21 36 0 0 chr6 45536259 45536287 -143743267 + AT_rich Low_complexity Low_complexity 1 28 0 5157 148 21 56 chr6 45536411 45537229 -143742325 - L1MB2 LINE L1 -25 6146 5302 806 164 8 8 chr6 45537229 45537351 -143742203 - FLAM_C SINE Alu -11 122 1 5157 148 21 56 chr6 45537351 45537659 -143741895 - L1MB2 LINE L1 -869 5302 5071 2202 108 0 34 chr6 45537659 45537982 -143741572 - AluSq SINE Alu -1 312 1 5157 148 21 56 chr6 45537982 45538191 -143741363 - L1MB2 LINE L1 -1100 5071 4856 2281 106 7 0 chr6 45538625 45538926 -143740628 - AluSx SINE Alu -9 303 1 1853 133 0 4 chr6 45539023 45539293 -143740261 - AluJb SINE Alu -21 291 23 189 0 0 0 chr6 45539419 45539440 -143740114 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr6 45539794 45539817 -143739737 + AT_rich Low_complexity Low_complexity 1 23 0 829 228 32 6 chr6 45539883 45540041 -143739513 + AluJo SINE Alu 117 278 -34 363 154 0 0 chr6 45540041 45540106 -143739448 + GA-rich Low_complexity Low_complexity 1 65 0 2256 89 10 0 chr6 45540177 45540469 -143739085 + AluSg SINE Alu 1 295 -15 471 183 49 0 chr6 45540579 45540661 -143738893 + MIR SINE MIR 41 126 -136 1725 200 94 8 chr6 45540719 45541498 -143738056 + L1ME1 LINE L1 5113 6165 -1 2444 83 0 3 chr6 45541584 45541885 -143737669 + AluSc SINE Alu 1 300 -9 218 260 104 0 chr6 45542332 45542409 -143737145 - MIR SINE MIR 0 262 178 23 54 0 0 chr6 45542411 45542448 -143737106 + AT_rich Low_complexity Low_complexity 1 37 0 2345 112 3 0 chr6 45542517 45542829 -143736725 + AluSq SINE Alu 1 313 0 2103 126 3 3 chr6 45543172 45543481 -143736073 + AluSx SINE Alu 3 311 -1 189 0 0 0 chr6 45544229 45544250 -143735304 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1681 140 75 29 chr6 45544817 45544961 -143734593 + AluJb SINE Alu 1 137 -175 1671 156 0 11 chr6 45544961 45545236 -143734318 + AluSx SINE Alu 1 272 -40 1681 140 75 29 chr6 45545236 45545370 -143734184 + AluJb SINE Alu 137 292 -20 5949 173 81 43 chr6 45545417 45546817 -143732737 - Charlie1a DNA MER1_type -1 1454 2 2567 66 0 0 chr6 45547367 45547670 -143731884 - AluSg SINE Alu -6 304 2 1766 170 10 20 chr6 45548327 45548627 -143730927 - AluJo SINE Alu -15 297 1 549 217 133 0 chr6 45549086 45549229 -143730325 - MIR SINE MIR -26 236 75 212 296 10 71 chr6 45549875 45549973 -143729581 + MIR3 SINE MIR 97 165 -43 7435 124 58 15 chr6 45550024 45550884 -143728670 - Tigger3b DNA MER2_type -1797 1231 305 1796 179 7 13 chr6 45550884 45551192 -143728362 - AluJo SINE Alu -6 306 1 7435 124 58 15 chr6 45551192 45551511 -143728043 - Tigger3b DNA MER2_type -2723 305 1 22 0 0 0 chr6 45551602 45551624 -143727930 + AT_rich Low_complexity Low_complexity 1 22 0 2008 100 44 0 chr6 45551632 45551951 -143727603 + AluSx SINE Alu 1 331 0 370 270 104 52 chr6 45552087 45552226 -143727328 + MIR SINE MIR 31 186 -76 970 229 188 8 chr6 45552226 45552471 -143727083 + AluJo SINE Alu 2 290 -12 370 270 104 52 chr6 45552471 45552542 -143727012 + MIR SINE MIR 186 252 -10 201 288 173 14 chr6 45553160 45553299 -143726255 + MIR SINE MIR 21 181 -81 216 268 25 115 chr6 45553381 45553538 -143726016 + L2 LINE L2 2747 2889 -425 225 320 79 3 chr6 45553825 45553965 -143725589 + MIR SINE MIR 6 154 -71 764 259 37 59 chr6 45554880 45555201 -143724353 + L1MC4 LINE L1 7276 7589 -453 887 181 0 30 chr6 45555201 45555367 -143724187 + FRAM SINE Alu 10 170 -6 772 260 108 17 chr6 45555367 45555663 -143723891 + L1MC4 LINE L1 7577 7899 -143 2289 119 0 3 chr6 45555742 45556052 -143723502 + AluSx SINE Alu 1 309 -3 382 311 90 52 chr6 45557651 45557918 -143721636 - HAL1 LINE L1 -1041 1466 1190 808 197 6 39 chr6 45557926 45558104 -143721450 - MER5B DNA MER1_type -6 172 1 1679 150 16 53 chr6 45558169 45558489 -143721065 - AluJo SINE Alu -4 308 1 2039 152 0 0 chr6 45558576 45558879 -143720675 + AluSq SINE Alu 1 303 -10 2473 82 0 0 chr6 45558879 45559182 -143720372 + AluY SINE Alu 1 303 -8 1293 140 236 0 chr6 45559987 45560237 -143719317 + AluJo SINE Alu 2 310 -2 2200 107 0 16 chr6 45560374 45560684 -143718870 - AluSx SINE Alu -6 306 2 426 268 49 79 chr6 45560951 45561216 -143718338 + L1ME4a LINE L1 5855 6111 -10 263 303 20 0 chr6 45561372 45561471 -143718083 - L2 LINE L2 -1008 2306 2206 724 200 34 11 chr6 45561558 45561733 -143717821 + MER46B DNA MER2_type 2 55 -181 9156 35 2 1 chr6 45561849 45562919 -143716635 + MER11C LTR ERVK 1 1071 0 1356 161 67 42 chr6 45562988 45563273 -143716281 + AluJo SINE Alu 1 292 -20 25 51 0 0 chr6 45563829 45563868 -143715686 + AT_rich Low_complexity Low_complexity 1 39 0 581 106 16 81 chr6 45563868 45563991 -143715563 + MER46B DNA MER2_type 43 157 -79 508 105 0 35 chr6 45564191 45564277 -143715277 + MER46B DNA MER2_type 154 236 0 1311 118 0 5 chr6 45564525 45564712 -143714842 - AluSp SINE Alu -4 309 124 564 248 8 0 chr6 45564815 45564940 -143714614 + FLAM_A SINE Alu 1 126 -7 843 149 8 0 chr6 45564949 45565083 -143714471 + AluSq/x SINE Alu 1 135 -178 24 0 0 0 chr6 45565083 45565107 -143714447 + AT_rich Low_complexity Low_complexity 1 24 0 608 215 44 30 chr6 45565136 45565271 -143714283 - L2 LINE L2 0 3313 3177 216 269 90 26 chr6 45565454 45565532 -143714022 + L2 LINE L2 3172 3254 -18 366 269 143 8 chr6 45566176 45566295 -143713259 + MIR3 SINE MIR 61 195 -13 2157 177 58 56 chr6 45566475 45566517 -143713037 - MLT1D LTR MaLR -1 504 464 2315 91 3 22 chr6 45566517 45566835 -143712719 + AluSx SINE Alu 1 312 0 2461 68 0 13 chr6 45566839 45567150 -143712404 + AluY SINE Alu 1 307 -4 2157 177 58 56 chr6 45567150 45567604 -143711950 - MLT1D LTR MaLR -43 462 2 1054 92 0 0 chr6 45567858 45567989 -143711565 + AluSg SINE Alu 1 131 -179 2226 69 10 30 chr6 45568004 45568309 -143711245 + AluY SINE Alu 1 299 -12 4624 218 104 22 chr6 45568309 45568698 -143710856 - L1M4 LINE L1 -2017 4129 3774 1914 156 3 28 chr6 45568698 45569018 -143710536 + AluJb SINE Alu 1 312 0 4624 218 104 22 chr6 45569018 45569158 -143710396 - L1M4 LINE L1 -2372 3774 3647 2233 111 3 0 chr6 45569158 45569456 -143710098 - AluSp SINE Alu -14 299 1 4624 218 104 22 chr6 45569456 45570174 -143709380 - L1M4 LINE L1 -2499 3647 2726 2504 69 3 0 chr6 45570174 45570477 -143709077 - AluSp SINE Alu -9 304 1 4624 218 104 22 chr6 45570477 45570778 -143708776 - L1M4 LINE L1 -3420 2726 2451 1055 202 67 13 chr6 45570798 45571036 -143708518 + L1MB7 LINE L1 5877 6127 -57 815 152 0 15 chr6 45571066 45571198 -143708356 - FLAM_C SINE Alu -3 130 1 395 94 0 0 chr6 45571198 45571262 -143708292 + L1MB7 LINE L1 6112 6175 -9 2195 98 17 7 chr6 45571400 45571697 -143707857 + AluSq SINE Alu 1 300 -13 722 283 41 14 chr6 45571697 45571916 -143707638 + MIR SINE MIR 22 246 -16 722 193 0 22 chr6 45571972 45572107 -143707447 - FLAM_C SINE Alu 0 133 2 1953 153 3 33 chr6 45572186 45572493 -143707061 - AluJb SINE Alu -14 298 1 309 349 71 32 chr6 45573103 45573384 -143706170 - L2 LINE L2 -338 2976 2685 692 237 149 17 chr6 45573385 45573800 -143705754 + L2 LINE L2 2742 3213 -100 272 374 123 0 chr6 45573800 45573963 -143705591 - MIR SINE MIR -78 184 2 2394 71 3 10 chr6 45575203 45575498 -143704056 - AluSc SINE Alu -16 293 1 1971 132 65 3 chr6 45575661 45576001 -143703553 + MER47A DNA MER2_type 3 363 -3 377 270 112 45 chr6 45576112 45576402 -143703152 + L1ME LINE L1 5511 5822 -299 2228 82 27 3 chr6 45576518 45576812 -143702742 + AluSc SINE Alu 1 301 -8 426 20 0 0 chr6 45576917 45576968 -143702586 + (TG)n Simple_repeat Simple_repeat 2 52 0 505 268 54 0 chr6 45577129 45577241 -143702313 - L2 LINE L2 0 3272 3155 1618 92 0 0 chr6 45577508 45577704 -143701850 + AluSq SINE Alu 1 196 -117 1257 138 11 0 chr6 45577704 45577885 -143701669 + AluSg/x SINE Alu 111 293 -17 269 24 0 0 chr6 45578540 45578582 -143700972 - L1PA4 LINE L1 0 6155 6114 259 48 0 0 chr6 45578588 45578630 -143700924 - L1PA3 LINE L1 0 6155 6114 275 359 26 26 chr6 45579014 45579131 -143700423 + L3 LINE CR1 1338 1454 -123 22 0 0 0 chr6 45579998 45580020 -143699534 + AT_rich Low_complexity Low_complexity 1 22 0 2201 98 23 13 chr6 45580365 45580671 -143698883 + AluSq SINE Alu 5 313 0 1909 167 0 16 chr6 45580886 45581203 -143698351 + AluJb SINE Alu 1 312 0 2442 64 0 0 chr6 45581782 45582077 -143697477 - AluY SINE Alu -16 295 1 23 33 0 0 chr6 45582319 45582349 -143697205 + AT_rich Low_complexity Low_complexity 1 30 0 2302 78 3 20 chr6 45582553 45582859 -143696695 + AluY SINE Alu 1 301 -10 191 261 22 0 chr6 45583018 45583064 -143696490 - L2 LINE L2 -16 3256 3210 1834 158 44 0 chr6 45583177 45583474 -143696080 + AluJb SINE Alu 1 310 -2 22 56 0 0 chr6 45583500 45583536 -143696018 + AT_rich Low_complexity Low_complexity 1 36 0 449 230 53 18 chr6 45583822 45583935 -143695619 + MIR3 SINE MIR 63 179 -29 554 194 366 11 chr6 45584510 45584685 -143694869 - MIR SINE MIR 0 262 26 606 236 67 51 chr6 45634858 45635178 -143644376 - MLT1H1 LTR MaLR -204 363 48 406 301 85 45 chr6 45635226 45635472 -143644082 - MLT1H1-int LTR MaLR 0 1371 1116 2202 123 3 0 chr6 45635514 45635807 -143643747 + AluSx SINE Alu 1 294 -18 1331 125 11 0 chr6 45635902 45636086 -143643468 - AluSg/x SINE Alu -2 308 123 433 225 85 78 chr6 45636091 45636220 -143643334 - MLT1H LTR MaLR -342 207 32 802 144 6 24 chr6 45636398 45636425 -143643129 + MER53 DNA DNA 1 27 -162 2272 85 0 14 chr6 45636425 45636749 -143642805 + AluSx SINE Alu 1 312 0 802 144 6 24 chr6 45636749 45636888 -143642666 + MER53 DNA DNA 27 164 -25 234 145 116 87 chr6 45636884 45636953 -143642601 - MER53 DNA DNA -94 95 25 * 2676 7 0 0 chr6 45636953 45637292 -143642262 - AluYa5 SINE Alu 0 339 1 2025 138 3 3 chr6 45637294 45637590 -143641964 - AluJb SINE Alu -16 296 1 2220 125 0 0 chr6 45637602 45637897 -143641657 - AluSx SINE Alu -17 295 1 618 136 9 0 chr6 45638017 45638127 -143641427 + L1PA14 LINE L1 6051 6161 0 652 218 94 44 chr6 45638138 45638206 -143641348 + L1M4 LINE L1 4889 4952 -1194 2525 64 0 0 chr6 45638206 45638501 -143641053 - AluY SINE Alu -16 295 1 652 218 94 44 chr6 45638501 45638707 -143640847 + L1M4 LINE L1 4952 5177 -969 2370 105 0 0 chr6 45638717 45639012 -143640542 + AluSq SINE Alu 1 295 -18 913 156 21 0 chr6 45639012 45639153 -143640401 + AluSg/x SINE Alu 132 275 -35 865 113 56 0 chr6 45639153 45639313 -143640241 + L1MA4A LINE L1 6124 6292 -11 880 259 106 61 chr6 45639383 45639874 -143639680 + LTR67 LTR ERVL 45 557 0 248 317 20 30 chr6 45639874 45639975 -143639579 + MIR SINE MIR 48 147 -61 268 229 55 9 chr6 45640437 45640546 -143639008 + L1ME4a LINE L1 4587 4700 -1446 2437 57 0 0 chr6 45640609 45640916 -143638638 + AluY SINE Alu 1 307 0 501 47 0 0 chr6 45640945 45641009 -143638545 + (TA)n Simple_repeat Simple_repeat 2 65 0 2511 92 0 0 chr6 45641009 45641314 -143638240 - AluSg SINE Alu -5 305 1 272 269 79 37 chr6 45641395 45641577 -143637977 + L1P LINE L1 4880 5064 -1082 2065 134 3 0 chr6 45641577 45641869 -143637685 + AluSx SINE Alu 1 293 -19 2491 100 0 0 chr6 45641891 45642202 -143637352 + AluSq SINE Alu 1 311 -2 753 286 54 53 chr6 45642216 45642943 -143636611 + L1ME4a LINE L1 5374 6114 -7 2496 56 10 23 chr6 45642965 45643270 -143636284 - AluSp SINE Alu -12 301 1 2250 108 15 20 chr6 45643292 45643633 -143635921 - L1PA13 LINE L1 -1 6162 5824 542 259 186 33 chr6 45643737 45644011 -143635543 + L1MC4a LINE L1 5484 5799 -322 2140 124 10 0 chr6 45644011 45644301 -143635253 - AluSx SINE Alu -19 293 1 963 198 86 33 chr6 45644360 45644506 -143635048 + MLT1J LTR MaLR 1 138 -373 207 0 0 0 chr6 45644506 45644529 -143635025 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 963 198 86 33 chr6 45644529 45644778 -143634776 + MLT1J LTR MaLR 138 509 -2 1858 127 7 20 chr6 45644783 45645075 -143634479 - THE1B LTR MaLR 0 364 77 347 232 21 0 chr6 45645087 45645182 -143634372 + L1MC4a LINE L1 5835 5931 -1877 217 278 148 26 chr6 45645572 45645687 -143633867 - L2 LINE L2 -5 3308 3180 285 224 30 0 chr6 45645719 45645786 -143633768 - L2 LINE L2 -246 3067 2999 2027 210 48 17 chr6 45645903 45645946 -143633608 + L1ME1 LINE L1 5435 5475 -689 1806 141 44 24 chr6 45645946 45646244 -143633310 + AluJb SINE Alu 1 304 -8 2027 210 48 17 chr6 45646244 45646741 -143632813 + L1ME1 LINE L1 5475 5972 -192 1910 157 24 0 chr6 45646793 45647086 -143632468 + AluJb SINE Alu 7 306 -6 2135 121 3 0 chr6 45647086 45647375 -143632179 + AluSx SINE Alu 1 290 -22 237 65 0 0 chr6 45647375 45647406 -143632148 + (GGAGA)n Simple_repeat Simple_repeat 1 31 0 469 226 71 1 chr6 45647412 45647569 -143631985 + L1ME1 LINE L1 6021 6331 -3 1629 137 67 60 chr6 45647626 45647926 -143631628 - AluJo SINE Alu -10 302 1 1283 130 0 0 chr6 45648679 45648856 -143630698 + AluJb SINE Alu 136 312 0 482 297 113 11 chr6 45649119 45649304 -143630250 - MIR SINE MIR 0 262 59 224 279 105 0 chr6 45649625 45649711 -143629843 + L2 LINE L2 2965 3059 -213 2480 93 0 0 chr6 45649919 45650231 -143629323 + AluSq SINE Alu 1 312 -1 2394 92 10 0 chr6 45650285 45650580 -143628974 + AluSq SINE Alu 2 299 -14 30 0 0 0 chr6 45650661 45650691 -143628863 + AT_rich Low_complexity Low_complexity 1 30 0 1798 117 32 0 chr6 45650700 45650948 -143628606 - AluSx SINE Alu -55 257 2 658 247 28 39 chr6 45650988 45651170 -143628384 + MIR SINE MIR 25 204 -58 312 330 109 35 chr6 45651277 45651843 -143627711 - L2 LINE L2 -265 3007 2382 1525 208 21 3 chr6 45651843 45652132 -143627422 + AluJo SINE Alu 5 298 -14 312 330 109 35 chr6 45652132 45652157 -143627397 - L2 LINE L2 -890 2382 2360 368 353 0 7 chr6 45653075 45653228 -143626326 + (TG)n Simple_repeat Simple_repeat 2 153 0 310 270 68 49 chr6 45653868 45654031 -143625523 - L2 LINE L2 -223 3049 2884 248 279 229 25 chr6 45654024 45654146 -143625408 - MIR3 SINE MIR -41 167 21 * 367 286 76 0 chr6 45654232 45654337 -143625217 + MIR SINE MIR 37 149 -59 289 261 57 11 chr6 45654393 45654481 -143625073 + L2 LINE L2 3180 3271 -1 1006 181 31 48 chr6 45655010 45655237 -143624317 + L1ME2 LINE L1 5931 6153 -11 564 332 14 14 chr6 45656547 45656761 -143622793 - MIR SINE MIR 0 262 49 2273 92 20 3 chr6 45656819 45657111 -143622443 + AluSx SINE Alu 1 297 -15 2334 90 7 0 chr6 45657213 45657503 -143622051 - AluSp SINE Alu -21 292 1 269 219 14 55 chr6 45657542 45657615 -143621939 + MIR SINE MIR 84 153 -109 1002 271 61 51 chr6 45657655 45658064 -143621490 + L2 LINE L2 2886 3298 -15 180 0 0 0 chr6 45658064 45658084 -143621470 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 340 287 86 29 chr6 45658261 45658541 -143621013 + L2 LINE L2 2765 3062 -210 220 220 0 102 chr6 45658632 45658691 -143620863 + L2 LINE L2 3242 3294 -19 2483 87 0 0 chr6 45658701 45659012 -143620542 + AluY SINE Alu 1 311 0 25 0 0 0 chr6 45659012 45659037 -143620517 + AT_rich Low_complexity Low_complexity 1 25 0 201 304 0 43 chr6 45659063 45659132 -143620422 + L2 LINE L2 3205 3270 -2 272 299 84 40 chr6 45659681 45659860 -143619694 + MIR SINE MIR 71 255 -7 1009 156 0 73 chr6 45660343 45660522 -143619032 + AluJb SINE Alu 134 299 -13 412 318 0 8 chr6 45660552 45660678 -143618876 + MIR SINE MIR 83 207 -55 216 206 0 68 chr6 45661908 45661981 -143617573 - MIR SINE MIR -86 122 55 396 0 0 0 chr6 45662286 45662330 -143617224 + (CA)n Simple_repeat Simple_repeat 1 44 0 192 77 0 0 chr6 45663874 45663900 -143615654 + (CGGG)n Simple_repeat Simple_repeat 1 26 0 188 336 154 0 chr6 45665081 45665230 -143614324 - L3 LINE CR1 -8 1569 1398 2375 101 3 0 chr6 45666177 45666484 -143613070 - AluSx SINE Alu -4 308 1 198 245 57 0 chr6 45666536 45666589 -143612965 + L2 LINE L2 3141 3196 -76 440 295 93 22 chr6 45666629 45666812 -143612742 + MIR SINE MIR 30 225 -37 275 228 18 0 chr6 45666887 45666944 -143612610 + MER94 DNA DNA 19 76 -58 221 203 102 17 chr6 45667014 45667073 -143612481 + L2 LINE L2 3207 3270 -2 183 80 0 0 chr6 45667433 45667458 -143612096 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 236 286 16 0 chr6 45667700 45667763 -143611791 + G-rich Low_complexity Low_complexity 5 68 0 2088 139 7 0 chr6 45668639 45668949 -143610605 + AluSx SINE Alu 1 312 0 580 229 169 11 chr6 45669100 45669263 -143610291 - MIR SINE MIR -1 261 65 2064 95 32 3 chr6 45669263 45669547 -143610007 - AluSg SINE Alu -18 292 1 580 229 169 11 chr6 45669547 45669566 -143609988 - MIR SINE MIR -197 65 50 1737 159 17 20 chr6 45669913 45670208 -143609346 - AluJb SINE Alu -18 294 1 2158 132 6 3 chr6 45670267 45670578 -143608976 + AluJb SINE Alu 1 312 0 243 261 0 0 chr6 45670719 45670788 -143608766 + L3b LINE CR1 1310 1378 -205 2089 138 10 7 chr6 45672359 45672656 -143606898 - AluSx SINE Alu -14 298 1 409 258 11 0 chr6 45673388 45673481 -143606073 - MER91B DNA MER1_type 0 190 97 362 256 16 78 chr6 45673514 45673643 -143605911 - MER91B DNA MER1_type -69 121 1 1308 205 118 23 chr6 45674544 45674880 -143604674 - MER21B LTR ERV1 -109 754 386 4785 60 22 0 chr6 45674880 45675501 -143604053 - PABL_A LTR ERV1 0 660 26 917 216 138 112 chr6 45675532 45675880 -143603674 - MER21B LTR ERV1 -498 365 9 1092 145 9 1 chr6 45676644 45676873 -143602681 - AluJb SINE Alu -10 302 43 299 296 168 14 chr6 45676920 45677140 -143602414 - L1ME LINE L1 -412 5758 5505 2228 110 0 17 chr6 45677159 45677460 -143602094 - AluSx SINE Alu -10 302 7 282 137 0 0 chr6 45677513 45677564 -143601990 + L1MA4 LINE L1 6248 6298 -2 1692 161 4 0 chr6 45677654 45677903 -143601651 - AluJb SINE Alu -62 250 1 278 259 238 14 chr6 45677908 45677963 -143601591 - MER5A DNA MER1_type -2 187 146 2428 76 13 3 chr6 45677963 45678266 -143601288 + AluSx SINE Alu 1 306 -6 278 259 238 14 chr6 45678266 45678353 -143601201 - MER5A DNA MER1_type -43 146 13 244 268 28 0 chr6 45678499 45678570 -143600984 + L2 LINE L2 2288 2360 -954 2388 86 0 3 chr6 45678962 45679263 -143600291 - AluSp SINE Alu -13 300 1 721 271 41 29 chr6 45679293 45679537 -143600017 - L2 LINE L2 -1 3312 3066 1037 139 0 6 chr6 45679563 45679721 -143599833 + AluSg/x SINE Alu 154 310 0 977 188 35 41 chr6 45679725 45679879 -143599675 + L1MD2 LINE L1 5063 5216 -1143 2369 98 0 3 chr6 45679879 45680185 -143599369 - AluSc SINE Alu -4 305 1 977 188 35 41 chr6 45680185 45680262 -143599292 + L1MD2 LINE L1 5216 5292 -1067 1765 120 4 4 chr6 45680262 45680512 -143599042 + AluSg SINE Alu 44 293 -17 977 188 35 41 chr6 45680512 45681371 -143598183 + L1MD2 LINE L1 5292 6344 -15 715 190 44 0 chr6 45681371 45681508 -143598046 + L1MD2 LINE L1 6194 6347 -12 2175 122 7 0 chr6 45681508 45681811 -143597743 + AluSx SINE Alu 1 305 -7 715 190 44 0 chr6 45681811 45681824 -143597730 + L1MD2 LINE L1 6347 6358 -1 977 188 35 41 chr6 45681824 45681839 -143597715 + L1MD2 LINE L1 6344 6358 -1 2319 236 170 21 chr6 45681845 45682964 -143596590 - L2 LINE L2 -162 3151 1859 698 338 48 28 chr6 45683635 45684171 -143595383 + L1M4 LINE L1 2312 2858 -3288 1644 101 5 0 chr6 45684819 45685038 -143594516 - AluSg/x SINE Alu -8 302 83 578 202 174 131 chr6 45685148 45685220 -143594334 - MLT1I LTR MaLR -3 406 339 2637 44 0 0 chr6 45685220 45685514 -143594040 + AluY SINE Alu 1 294 -17 578 202 174 131 chr6 45685514 45685723 -143593831 - MLT1I LTR MaLR -70 339 113 645 241 30 59 chr6 45685806 45686009 -143593545 + MIR SINE MIR 9 205 -57 2251 94 3 7 chr6 45686075 45686374 -143593180 + AluSp SINE Alu 1 298 -15 2396 80 0 7 chr6 45686656 45686956 -143592598 - AluSc SINE Alu -11 298 1 369 264 27 18 chr6 45687147 45687257 -143592297 - MIR3 SINE MIR -46 162 52 2023 146 3 13 chr6 45687818 45688133 -143591421 - AluJb SINE Alu 0 312 1 2322 75 13 16 chr6 45688575 45688880 -143590674 - AluSp SINE Alu -9 304 1 1186 151 0 6 chr6 45689128 45689307 -143590247 - AluSg/x SINE Alu -1 309 132 2259 116 0 0 chr6 45689307 45689599 -143589955 - AluSx SINE Alu -20 292 1 2187 91 26 19 chr6 45689643 45689952 -143589602 + AluY SINE Alu 1 311 0 1326 235 123 43 chr6 45690105 45690594 -143588960 - LTR41 LTR ERVL -9 764 237 416 180 223 14 chr6 45690677 45690816 -143588738 - LTR41 LTR ERVL -476 297 130 2114 216 90 10 chr6 45690820 45691307 -143588247 - MLT1F1 LTR MaLR -41 526 1 189 271 83 0 chr6 45691316 45691364 -143588190 - L2 LINE L2 -10 3303 3252 578 112 11 0 chr6 45691892 45691981 -143587573 + AluJo/FLAM SINE Alu 22 111 -201 2127 87 0 31 chr6 45691983 45692294 -143587260 - AluSq SINE Alu 0 308 7 2424 72 20 3 chr6 45692304 45692610 -143586944 - AluY SINE Alu 0 311 1 1005 287 78 53 chr6 45692699 45692838 -143586716 + MLT1E LTR MaLR 1 135 -458 2342 97 0 7 chr6 45692838 45693137 -143586417 - AluSx SINE Alu -13 299 3 1005 287 78 53 chr6 45693137 45693526 -143586028 + MLT1E LTR MaLR 135 547 -46 1828 141 166 3 chr6 45693526 45693894 -143585660 + MSTA LTR MaLR 1 428 0 1005 287 78 53 chr6 45693894 45693943 -143585611 + MLT1E LTR MaLR 547 593 0 1641 154 7 67 chr6 45694340 45694638 -143584916 + AluJb SINE Alu 1 280 -32 261 0 0 0 chr6 45694638 45694667 -143584887 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2243 107 23 13 chr6 45694681 45694989 -143584565 + AluSx SINE Alu 1 311 -1 1775 143 57 46 chr6 45695639 45695683 -143583871 - THE1C LTR MaLR 0 375 333 270 0 0 0 chr6 45695683 45695713 -143583841 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1978 101 41 4 chr6 45695713 45695980 -143583574 - AluSc SINE Alu -32 277 1 1775 143 57 46 chr6 45695980 45696305 -143583249 - THE1C LTR MaLR -41 334 1 3526 151 39 32 chr6 45696305 45696585 -143582969 + L1 LINE L1 4561 4838 -1308 1894 156 14 0 chr6 45696585 45696873 -143582681 - AluJo SINE Alu -20 292 1 3526 151 39 32 chr6 45696873 45697015 -143582539 + L1 LINE L1 4838 4978 -1168 2441 96 3 0 chr6 45697015 45697317 -143582237 + AluSp SINE Alu 1 303 -10 3526 151 39 32 chr6 45697317 45697489 -143582065 + L1 LINE L1 4978 5165 -981 2255 110 0 0 chr6 45697489 45697795 -143581759 + AluSg SINE Alu 1 306 0 3526 151 39 32 chr6 45697795 45697938 -143581616 + L1 LINE L1 5165 5306 -840 2167 129 0 10 chr6 45698009 45698304 -143581250 + AluSx SINE Alu 1 292 -20 2520 90 0 3 chr6 45698309 45698621 -143580933 + AluY SINE Alu 1 311 0 661 278 192 26 chr6 45698621 45698970 -143580584 - L1MC/D LINE L1 -2007 5801 5395 198 91 0 0 chr6 45699021 45699054 -143580500 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1271 119 119 4 chr6 45699056 45699292 -143580262 + L1M2 LINE L1 5325 5587 -710 1827 127 3 24 chr6 45699293 45699646 -143579908 - MER4A LTR ERV1 0 664 261 588 122 10 10 chr6 45699646 45699744 -143579810 - MER4A LTR ERV1 -566 98 1 1269 136 10 0 chr6 45699744 45699943 -143579611 + L1M2 LINE L1 5585 5785 -512 536 202 0 0 chr6 45699945 45700039 -143579515 + AluJ/FLAM SINE Alu 2 95 -217 2924 159 66 50 chr6 45700065 45700580 -143578974 - LTR9B LTR ERV1 0 644 139 1750 81 84 37 chr6 45700580 45700853 -143578701 + AluSg SINE Alu 2 287 -23 2924 159 66 50 chr6 45700853 45700902 -143578652 - LTR9B LTR ERV1 -505 139 92 1893 53 9 4 chr6 45700902 45701129 -143578425 + AluY SINE Alu 83 310 -1 2924 159 66 50 chr6 45701129 45701185 -143578369 - LTR9B LTR ERV1 -552 92 13 2168 102 0 0 chr6 45701185 45701469 -143578085 + AluSx SINE Alu 19 302 -10 242 133 133 0 chr6 45701469 45701514 -143578040 + AluJ SINE Alu 77 127 -175 183 42 0 0 chr6 45701515 45701539 -143578015 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2428 92 0 3 chr6 45702055 45702400 -143577154 + AluSq SINE Alu 1 344 0 26 0 0 0 chr6 45703680 45703706 -143575848 + AT_rich Low_complexity Low_complexity 1 26 0 1171 123 41 0 chr6 45703798 45703969 -143575585 + AluJ SINE Alu 121 298 -14 1792 150 23 49 chr6 45704301 45704608 -143574946 - AluJo SINE Alu -10 302 4 1684 152 8 16 chr6 45704626 45704882 -143574672 - AluJo SINE Alu -57 255 2 232 260 0 27 chr6 45705113 45705186 -143574368 + LTR33A LTR ERVL 445 515 -8 213 265 20 0 chr6 45705190 45705239 -143574315 + L2 LINE L2 3223 3272 0 497 186 28 76 chr6 45705346 45705388 -143574166 - MER112 DNA MER1_type -35 225 183 2600 73 0 0 chr6 45705388 45705690 -143573864 - AluSg SINE Alu -8 302 1 497 186 28 76 chr6 45705690 45705792 -143573762 - MER112 DNA MER1_type -77 183 88 2585 57 0 0 chr6 45706108 45706408 -143573146 - AluY SINE Alu -11 300 1 214 276 98 16 chr6 45707716 45707839 -143571715 + L2 LINE L2 2887 3019 -253 2192 80 21 17 chr6 45708179 45708466 -143571088 + AluSx SINE Alu 10 297 -15 243 0 0 0 chr6 45708467 45708494 -143571060 + (TA)n Simple_repeat Simple_repeat 2 28 0 41 0 0 0 chr6 45708554 45708595 -143570959 + AT_rich Low_complexity Low_complexity 1 41 0 1178 176 48 4 chr6 45708614 45708841 -143570713 - AluJb SINE Alu -4 308 72 21 36 0 0 chr6 45708903 45708931 -143570623 + AT_rich Low_complexity Low_complexity 1 28 0 1216 136 0 16 chr6 45708937 45709121 -143570433 + AluSg/x SINE Alu 85 265 -47 30 27 0 0 chr6 45709131 45709168 -143570386 + AT_rich Low_complexity Low_complexity 1 37 0 478 224 60 0 chr6 45709570 45709704 -143569850 + MIR3 SINE MIR 30 171 -37 469 228 62 14 chr6 45710127 45710272 -143569282 + MIR SINE MIR 2 153 -109 246 184 13 105 chr6 45710321 45710397 -143569157 + MLT1J2 LTR MaLR 71 139 -311 1266 138 147 18 chr6 45710432 45710650 -143568904 - AluJo SINE Alu -13 299 54 239 179 0 0 chr6 45710651 45710690 -143568864 + Alu SINE Alu 2 40 -261 713 90 0 0 chr6 45710690 45710790 -143568764 + AluSg/x SINE Alu 210 309 0 377 179 0 0 chr6 45710810 45710877 -143568677 - AluJo SINE Alu -235 67 1 881 142 0 0 chr6 45711163 45711290 -143568264 + FLAM_C SINE Alu 1 127 -16 24 32 0 0 chr6 45711300 45711331 -143568223 + AT_rich Low_complexity Low_complexity 1 31 0 302 221 0 84 chr6 45711542 45711637 -143567917 - MIR3 SINE MIR -13 195 109 1898 137 23 3 chr6 45711788 45712087 -143567467 + AluSx SINE Alu 1 305 -7 546 266 103 56 chr6 45713401 45713693 -143565861 + L2 LINE L2 2939 3249 -23 2206 134 0 0 chr6 45713693 45714000 -143565554 - AluSx SINE Alu -5 307 1 546 266 103 56 chr6 45714000 45714026 -143565528 + L2 LINE L2 3249 3272 0 556 292 51 17 chr6 45714124 45714302 -143565252 + MIR SINE MIR 3 186 -76 1983 106 78 0 chr6 45714534 45714816 -143564738 - AluSq SINE Alu -9 304 1 740 226 58 11 chr6 45714829 45715019 -143564535 - MIR SINE MIR -44 218 20 304 241 0 4 chr6 45715752 45715822 -143563732 - MIR SINE MIR -64 144 84 323 286 21 29 chr6 45715830 45715970 -143563584 - MLT1K LTR MaLR -1 587 449 472 196 135 177 chr6 45716018 45716108 -143563446 - MIR SINE MIR 0 262 170 1654 141 0 74 chr6 45716108 45716391 -143563163 - AluJb SINE Alu -50 262 1 472 196 135 177 chr6 45716391 45716560 -143562994 - MIR SINE MIR -92 170 14 384 285 146 0 chr6 45716595 45716725 -143562829 - MLT1K LTR MaLR -290 298 150 231 298 87 0 chr6 45717129 45717233 -143562321 - L2 LINE L2 -38 3234 3122 * 1078 248 51 88 chr6 45717219 45717478 -143562076 - L2 LINE L2 0 3313 3081 2337 116 0 19 chr6 45717478 45717796 -143561758 - AluSx SINE Alu 0 312 1 1078 248 51 88 chr6 45717796 45718045 -143561509 - L2 LINE L2 -232 3081 2824 442 253 205 39 chr6 45718067 45718399 -143561155 - L2 LINE L2 -2 3311 2925 208 297 18 45 chr6 45718428 45718539 -143561015 - L2 LINE L2 -570 2744 2637 725 208 78 74 chr6 45718743 45718973 -143560581 - L1ME3 LINE L1 -35 6127 5899 2168 127 3 0 chr6 45718973 45719265 -143560289 + AluSx SINE Alu 1 293 -19 2486 73 7 7 chr6 45719269 45719572 -143559982 + AluY SINE Alu 1 303 -8 725 208 78 74 chr6 45719572 45719605 -143559949 - L1ME3 LINE L1 -265 5897 5858 317 169 0 60 chr6 45719662 45719684 -143559870 - MER3 DNA MER1_type -6 203 181 2853 123 58 71 chr6 45719684 45720302 -143559252 - MER4B LTR ERV1 0 610 1 317 169 0 60 chr6 45720302 45720362 -143559192 - MER3 DNA MER1_type -28 181 126 725 161 0 8 chr6 45720362 45720480 -143559074 + AluJo SINE Alu 1 117 -195 2725 198 38 58 chr6 45720480 45720919 -143558635 - MER50 LTR ERV1 -3 731 312 2708 50 0 0 chr6 45720919 45721221 -143558333 - AluY SINE Alu -9 302 1 2725 198 38 58 chr6 45721221 45721518 -143558036 - MER50 LTR ERV1 -422 312 10 1357 136 15 0 chr6 45721522 45721720 -143557834 + AluJo SINE Alu 111 311 -1 2174 100 45 3 chr6 45721727 45722018 -143557536 + AluSx SINE Alu 1 303 -9 630 127 119 0 chr6 45722021 45722139 -143557415 - MER3 DNA MER1_type -77 132 1 569 203 0 8 chr6 45722141 45722259 -143557295 + L2 LINE L2 3191 3307 -6 647 289 78 0 chr6 45724220 45724400 -143555154 - MIR SINE MIR -11 251 58 219 69 0 0 chr6 45724428 45724457 -143555097 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 1763 182 23 0 chr6 45725006 45725353 -143554201 + L1 LINE L1 4810 5164 -982 2155 126 0 3 chr6 45725356 45725650 -143553904 + AluSx SINE Alu 1 293 -19 1884 153 10 30 chr6 45725677 45725978 -143553576 - AluJb SINE Alu -17 295 1 292 167 51 51 chr6 45726155 45726233 -143553321 - MER34 LTR ERV1 -2 540 463 282 270 92 26 chr6 45726433 45726585 -143552969 - LTR48B LTR ERV1 -354 290 129 1415 129 13 30 chr6 45726588 45726820 -143552734 + AluJb SINE Alu 85 312 0 1474 81 196 93 chr6 45726986 45727074 -143552480 - MER47A DNA MER2_type -1957 366 288 2531 78 3 0 chr6 45727074 45727383 -143552171 + AluSg SINE Alu 1 310 0 1474 81 196 93 chr6 45727383 45727394 -143552160 - MER47A DNA MER2_type -2035 288 280 1849 155 3 67 chr6 45727394 45727533 -143552021 + AluJb SINE Alu 1 147 -165 1873 142 18 0 chr6 45727533 45727659 -143551895 + AluSx SINE Alu 3 125 -187 216 0 0 0 chr6 45727659 45727683 -143551871 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1873 142 18 0 chr6 45727683 45727830 -143551724 + AluSx SINE Alu 125 281 -31 1849 155 3 67 chr6 45727830 45727844 -143551710 + AluJb SINE Alu 147 160 -152 252 0 0 0 chr6 45727844 45727872 -143551682 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1849 155 3 67 chr6 45727872 45728033 -143551521 + AluJb SINE Alu 160 296 -16 1474 81 196 93 chr6 45728033 45728264 -143551290 - MER47A DNA MER2_type -2043 280 1 400 260 36 99 chr6 45728656 45728848 -143550706 + MLT1J LTR MaLR 1 180 -331 2333 104 0 3 chr6 45728889 45729188 -143550366 + AluSq SINE Alu 3 300 -13 288 241 12 24 chr6 45729387 45729470 -143550084 + MLT1J LTR MaLR 428 509 -2 481 383 48 12 chr6 45729500 45729748 -143549806 - L3 LINE CR1 -1 1576 1320 2314 90 3 10 chr6 45729780 45730081 -143549473 + AluSx SINE Alu 1 299 -13 309 269 106 0 chr6 45730126 45730230 -143549324 + MIR SINE MIR 71 185 -77 330 26 0 0 chr6 45730406 45730445 -143549109 + (TG)n Simple_repeat Simple_repeat 1 39 0 193 250 31 47 chr6 45731218 45731282 -143548272 + MIR SINE MIR 103 165 -97 457 213 33 33 chr6 45731783 45731905 -143547649 + MIR SINE MIR 18 139 -69 343 270 127 24 chr6 45732170 45732296 -143547258 + MIR SINE MIR 60 198 -64 2311 113 3 0 chr6 45732399 45732701 -143546853 + AluSg SINE Alu 1 303 -7 360 0 0 0 chr6 45733228 45733268 -143546286 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 64 0 0 chr6 45733433 45733480 -143546074 + AT_rich Low_complexity Low_complexity 1 47 0 207 0 0 0 chr6 45734251 45734274 -143545280 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 610 167 5 4 chr6 45734274 45734469 -143545085 - AluJb SINE Alu -27 285 2 392 287 105 48 chr6 45734473 45734682 -143544872 + MIR SINE MIR 23 243 -19 702 85 0 0 chr6 45735190 45735284 -143544270 - MER4E LTR ERV1 0 766 673 4734 86 33 9 chr6 45735284 45735429 -143544125 - LTR8 LTR ERV1 0 691 551 2256 106 3 0 chr6 45735429 45735712 -143543842 - AluSq SINE Alu -28 285 2 4734 86 33 9 chr6 45735712 45736241 -143543313 - LTR8 LTR ERV1 -140 551 1 868 238 57 52 chr6 45736241 45736506 -143543048 + MER4B-int LTR ERV1 756 1025 -5733 2172 97 0 4 chr6 45736506 45736784 -143542770 - AluSg SINE Alu -32 278 2 868 238 57 52 chr6 45736784 45736905 -143542649 + MER4B-int LTR ERV1 1025 1144 -5614 198 0 0 0 chr6 45736905 45736927 -143542627 + (TG)n Simple_repeat Simple_repeat 2 23 0 2192 115 91 34 chr6 45736943 45737145 -143542409 + MER4B-int LTR ERV1 1764 1953 -4645 1678 143 0 0 chr6 45737145 45737382 -143542172 + AluSx SINE Alu 64 300 -12 2192 115 91 34 chr6 45737382 45737650 -143541904 + MER4B-int LTR ERV1 1953 2261 -4337 2009 106 4 0 chr6 45737875 45738171 -143541383 + AluSq SINE Alu 27 323 0 2171 94 37 14 chr6 45738178 45738475 -143541079 + AluSg SINE Alu 1 304 -6 2364 110 0 0 chr6 45738481 45738782 -143540772 + AluSx SINE Alu 1 301 -11 2352 97 10 0 chr6 45738870 45739180 -143540374 + AluSp SINE Alu 1 313 0 1172 119 0 0 chr6 45739181 45739375 -143540179 + AluSp SINE Alu 135 328 0 1566 132 4 44 chr6 45739495 45739746 -143539808 - AluJo SINE Alu -51 261 21 1210 114 0 6 chr6 45739780 45739946 -143539608 - AluSq SINE Alu -12 301 137 303 258 136 38 chr6 45739946 45740078 -143539476 - MIR SINE MIR -100 162 18 2426 81 3 3 chr6 45740114 45740421 -143539133 - AluY SINE Alu -2 309 3 31 26 0 0 chr6 45740482 45740520 -143539034 + AT_rich Low_complexity Low_complexity 1 38 0 205 132 19 19 chr6 45740679 45740732 -143538822 + (TA)n Simple_repeat Simple_repeat 1 53 0 374 163 0 184 chr6 45742121 45742268 -143537286 - MIR3 SINE MIR -7 201 82 1874 174 0 13 chr6 45742693 45743009 -143536545 - AluJb SINE Alu 0 312 1 647 159 71 16 chr6 45743033 45743182 -143536372 + FLAM_C SINE Alu 1 133 0 287 229 67 0 chr6 45743518 45743623 -143535931 - MIR3 SINE MIR -7 201 90 203 246 134 82 chr6 45743756 45743927 -143535627 - MIR SINE MIR -55 207 28 669 154 0 65 chr6 45744053 45744176 -143535378 + FLAM_C SINE Alu 4 118 -25 203 164 49 0 chr6 45744179 45744240 -143535314 + (TA)n Simple_repeat Simple_repeat 1 64 0 * 221 118 0 39 chr6 45744196 45744247 -143535307 + (TAAAAA)n Simple_repeat Simple_repeat 3 51 0 1052 127 0 0 chr6 45744247 45744389 -143535165 + AluJo SINE Alu 1 142 -170 435 73 24 12 chr6 45744406 45744488 -143535066 + (TA)n Simple_repeat Simple_repeat 1 83 0 844 182 28 55 chr6 45745131 45745364 -143534190 - MLT1A1 LTR MaLR -3 393 142 1976 119 0 0 chr6 45745425 45745685 -143533869 - AluJb SINE Alu -52 260 1 492 28 28 0 chr6 45745691 45745762 -143533792 - L1MA5 LINE L1 -2 6298 6226 1165 171 0 9 chr6 45745811 45746028 -143533526 - L1MA5 LINE L1 -79 6221 6007 927 119 7 13 chr6 45746032 45746183 -143533371 - MLT1A1 LTR MaLR -204 161 12 336 284 147 0 chr6 45746190 45746299 -143533255 + MIR SINE MIR 127 251 -11 977 104 7 14 chr6 45746316 45746460 -143533094 + AluYb8 SINE Alu 1 143 -175 1601 52 11 0 chr6 45746547 45746738 -143532816 + AluY SINE Alu 119 311 0 1133 232 104 32 chr6 45746754 45747129 -143532425 - MLT1I LTR MaLR 0 409 8 420 319 100 6 chr6 45747181 45747341 -143532213 - MIR SINE MIR -3 259 85 377 283 0 72 chr6 45747810 45747976 -143531578 + MIR SINE MIR 16 169 -93 808 227 16 70 chr6 45748491 45748654 -143530900 - MIR SINE MIR -4 258 111 2365 103 0 0 chr6 45748654 45748954 -143530600 + AluSx SINE Alu 1 300 -12 808 227 16 70 chr6 45748954 45749032 -143530522 - MIR SINE MIR -151 111 30 189 220 0 60 chr6 45749053 45749103 -143530451 - MER5A DNA MER1_type -28 161 115 2493 69 7 0 chr6 45749121 45749424 -143530130 - AluY SINE Alu -6 305 1 329 263 17 95 chr6 45749564 45749668 -143529886 - MER104 DNA Tc2 -1726 172 86 2390 91 3 3 chr6 45749668 45749976 -143529578 - AluSp SINE Alu -3 310 3 329 263 17 95 chr6 45749976 45750050 -143529504 - MER104 DNA Tc2 -1812 86 8 238 266 0 55 chr6 45750160 45750269 -143529285 + MIR SINE MIR 34 136 -126 224 294 76 0 chr6 45751568 45751660 -143527894 - MIR SINE MIR -68 140 42 1377 114 0 0 chr6 45751757 45751771 -143527783 + AluSg/x SINE Alu 120 133 -179 2731 45 0 0 chr6 45751771 45752079 -143527475 + AluYb8 SINE Alu 1 308 -10 1377 114 0 0 chr6 45752079 45752257 -143527297 + AluSg/x SINE Alu 132 312 0 4122 174 34 23 chr6 45752383 45752411 -143527143 + L1MB7 LINE L1 4799 4825 -1359 2216 139 0 0 chr6 45752411 45752721 -143526833 + AluSx SINE Alu 1 310 -2 4122 174 34 23 chr6 45752721 45752924 -143526630 + L1MB7 LINE L1 4825 5024 -1160 2235 119 10 13 chr6 45752924 45753236 -143526318 + AluY SINE Alu 1 311 0 4122 174 34 23 chr6 45753236 45754203 -143525351 + L1MB7 LINE L1 5024 6110 -74 1739 154 51 20 chr6 45754215 45754507 -143525047 - AluJb SINE Alu -11 301 1 23 0 0 0 chr6 45754515 45754538 -143525016 + AT_rich Low_complexity Low_complexity 1 23 0 203 211 105 0 chr6 45754557 45754614 -143524940 + MIR SINE MIR 194 256 -6 2054 137 0 13 chr6 45754691 45754990 -143524564 - AluSx SINE Alu -17 295 1 185 282 111 77 chr6 45755047 45755164 -143524390 - L2 LINE L2 -40 3273 3153 2298 95 0 3 chr6 45755540 45755836 -143523718 - AluSq SINE Alu -18 295 1 2594 71 0 6 chr6 45756276 45756623 -143522931 + AluY SINE Alu 1 311 0 226 183 42 70 chr6 45756809 45756880 -143522674 + MER5A DNA MER1_type 7 75 -114 * 534 203 123 43 chr6 45756820 45756880 -143522674 - MER5A DNA MER1_type -3 186 132 2253 114 0 0 chr6 45756880 45757178 -143522376 + AluSx SINE Alu 2 299 -13 534 203 123 43 chr6 45757178 45757280 -143522274 - MER5A DNA MER1_type -57 132 11 405 0 0 0 chr6 45757307 45757352 -143522202 + (TG)n Simple_repeat Simple_repeat 2 46 0 2260 88 3 0 chr6 45757354 45757638 -143521916 - AluSp SINE Alu -28 285 1 1840 151 3 49 chr6 45757719 45758043 -143521511 - AluJb SINE Alu 0 312 4 1867 106 71 21 chr6 45758349 45758631 -143520923 - AluSc SINE Alu 0 309 14 1140 82 0 0 chr6 45758632 45758767 -143520787 - AluSq/x SINE Alu -177 135 1 264 236 79 56 chr6 45759126 45759215 -143520339 + MIR3 SINE MIR 96 186 -22 768 99 0 0 chr6 45759225 45759336 -143520218 + (CA)n Simple_repeat Simple_repeat 1 111 0 1315 97 21 5 chr6 45759761 45759947 -143519607 + MER2 DNA MER2_type 22 210 -135 1092 147 0 0 chr6 45759975 45760132 -143519422 - AluSg/x SINE Alu -21 291 135 231 36 0 0 chr6 45760132 45760160 -143519394 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2128 81 41 0 chr6 45760160 45760431 -143519123 - AluSg SINE Alu -28 282 1 403 213 13 0 chr6 45760453 45760528 -143519026 + MER2 DNA MER2_type 269 344 -1 195 69 0 0 chr6 45761021 45761050 -143518504 + (TA)n Simple_repeat Simple_repeat 2 30 0 1200 196 35 39 chr6 45761050 45761205 -143518349 - AluSp SINE Alu -25 288 133 2564 71 0 0 chr6 45761205 45761514 -143518040 - AluY SINE Alu 0 311 3 1200 196 35 39 chr6 45761514 45761644 -143517910 - AluSp SINE Alu -180 133 4 296 137 39 0 chr6 45761645 45761696 -143517858 - AluJb SINE Alu -165 137 85 2300 86 3 0 chr6 45761737 45762028 -143517526 + AluSp SINE Alu 1 292 -21 252 0 0 0 chr6 45762028 45762056 -143517498 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2224 122 0 0 chr6 45762192 45762486 -143517068 + AluJb SINE Alu 1 294 -18 969 83 0 0 chr6 45762581 45762749 -143516805 + AluSg/x SINE Alu 165 332 0 909 241 133 67 chr6 45762966 45763202 -143516352 - MLT1F1 LTR MaLR -7 560 341 8451 10 0 0 chr6 45763202 45764800 -143514754 - L1PA2 LINE L1 0 6155 4560 909 241 133 67 chr6 45764800 45765051 -143514503 - MLT1F1 LTR MaLR -226 341 16 2023 128 10 13 chr6 45765100 45765404 -143514150 - AluJb SINE Alu -9 303 1 2114 139 0 0 chr6 45765950 45766252 -143513302 - AluSx SINE Alu -10 302 1 2118 90 0 84 chr6 45766387 45766710 -143512844 - AluSp SINE Alu -17 296 1 1840 162 10 0 chr6 45766957 45767247 -143512307 - AluJo SINE Alu -19 293 1 2064 93 30 4 chr6 45768106 45768412 -143511142 - AluSc SINE Alu 0 315 3 328 151 178 14 chr6 45768412 45768485 -143511069 + L1MC1 LINE L1 5578 5662 -459 1841 177 33 21 chr6 45771885 45772218 -143507336 + MER1B DNA MER1_type 1 337 0 2011 134 0 7 chr6 45772328 45772645 -143506909 + AluJb SINE Alu 1 315 0 190 274 55 82 chr6 45773100 45773173 -143506381 - L2 LINE L2 -48 3265 3195 442 214 169 6 chr6 45773295 45773421 -143506133 - MIR SINE MIR -73 135 31 1838 150 17 17 chr6 45773421 45773715 -143505839 - AluJb SINE Alu -18 294 1 442 214 169 6 chr6 45773715 45773726 -143505828 - MIR SINE MIR -177 31 23 2210 104 7 3 chr6 45773726 45774025 -143505529 - AluSq SINE Alu -13 300 1 1087 183 15 5 chr6 45774974 45775171 -143504383 - AluJo SINE Alu -113 199 1 2156 113 10 0 chr6 45775542 45775835 -143503719 - AluSx SINE Alu -16 296 1 1004 102 0 0 chr6 45775835 45775962 -143503592 - AluJo/FLAM SINE Alu -183 129 3 2416 88 0 0 chr6 45777409 45777714 -143501840 + AluSc SINE Alu 1 305 -4 2469 77 0 0 chr6 45778828 45779125 -143500429 - AluY SINE Alu -14 297 1 2265 97 0 3 chr6 45779317 45779606 -143499948 - AluSc SINE Alu -21 288 1 2468 57 7 0 chr6 45779863 45780160 -143499394 - AluY SINE Alu -12 299 1 254 188 78 47 chr6 45780741 45780805 -143498749 + AluJb SINE Alu 118 183 -119 2578 149 117 2 chr6 45780805 45781294 -143498260 + L1MC1 LINE L1 5789 6333 0 419 198 0 79 chr6 45781908 45782000 -143497554 + L1MB2 LINE L1 5974 6055 -116 967 143 0 0 chr6 45782000 45782133 -143497421 + FLAM_C SINE Alu 1 133 0 419 198 0 79 chr6 45782133 45782166 -143497388 + L1MB2 LINE L1 6055 6089 -82 1550 122 168 34 chr6 45782166 45782428 -143497126 + AluJb SINE Alu 1 297 -5 1477 136 97 4 chr6 45782449 45782728 -143496826 + L1MA7 LINE L1 3289 3593 -2553 7922 136 39 23 chr6 45782737 45783071 -143496483 + L1MA7 LINE L1 3865 4192 -1988 1807 157 7 20 chr6 45783071 45783365 -143496189 - AluJo SINE Alu -22 290 1 7922 136 39 23 chr6 45783365 45783677 -143495877 + L1MA7 LINE L1 4192 4498 -1682 1494 185 89 0 chr6 45783677 45783958 -143495596 - AluSg SINE Alu -4 306 1 7922 136 39 23 chr6 45783958 45784132 -143495422 + L1MA7 LINE L1 4498 4668 -1512 1853 159 3 3 chr6 45784132 45784428 -143495126 + AluJo SINE Alu 1 296 -16 7922 136 39 23 chr6 45784428 45785519 -143494035 + L1MA7 LINE L1 4668 5788 -392 910 182 88 6 chr6 45785522 45785703 -143493851 + MER46A DNA MER2_type 41 236 0 1307 132 25 33 chr6 45785703 45785945 -143493609 + L1MA7 LINE L1 5786 6025 -266 316 271 175 0 chr6 45786589 45786755 -143492799 - L2 LINE L2 -129 3184 2990 1026 288 156 39 chr6 45786811 45787037 -143492517 - L2 LINE L2 -544 2770 2572 1992 129 31 0 chr6 45787037 45787331 -143492223 - AluSx SINE Alu -9 303 1 1026 288 156 39 chr6 45787331 45787701 -143491853 - L2 LINE L2 -742 2572 2104 1119 217 80 59 chr6 45788708 45788815 -143490739 - MER2 DNA MER2_type -1 344 241 1601 174 3 96 chr6 45788815 45789148 -143490406 + AluJo SINE Alu 1 302 0 1119 217 80 59 chr6 45789148 45789377 -143490177 - MER2 DNA MER2_type -104 241 1 2095 152 0 0 chr6 45789810 45790106 -143489448 - AluSx SINE Alu -14 298 3 2378 89 0 3 chr6 45790877 45791181 -143488373 + AluY SINE Alu 1 303 -8 1047 252 137 118 chr6 45791461 45791617 -143487937 + MER21B LTR ERV1 23 175 -688 2008 116 30 0 chr6 45791617 45791884 -143487670 - AluSq SINE Alu -38 275 1 1047 252 137 118 chr6 45791884 45792406 -143487148 + MER21B LTR ERV1 175 714 -149 212 263 32 32 chr6 45792423 45792518 -143487036 - L2 LINE L2 -50 3263 3169 890 118 0 0 chr6 45793501 45793620 -143485934 - FLAM_C SINE Alu -19 124 6 355 224 137 55 chr6 45793954 45794209 -143485345 - L1MC5 LINE L1 -32 7929 7654 1707 250 164 36 chr6 45794218 45795145 -143484409 + HAL1 LINE L1 1308 2353 -154 1235 221 39 4 chr6 45795276 45795507 -143484047 + MER8 DNA MER2_type 1 239 0 227 197 225 0 chr6 45795629 45795700 -143483854 + L2 LINE L2 3186 3272 0 2317 65 0 21 chr6 45795719 45796009 -143483545 - AluY SINE Alu -15 296 13 836 161 10 78 chr6 45796039 45796231 -143483323 + MSTC LTR MaLR 1 179 -249 693 220 95 125 chr6 45796446 45796814 -143482740 - L2 LINE L2 -15 3298 2942 288 205 179 0 chr6 45796833 45796911 -143482643 - L2 LINE L2 -515 2799 2708 4040 260 130 53 chr6 45796913 45797931 -143481623 + L1MA2 LINE L1 10 948 -5901 252 0 0 0 chr6 45797931 45797959 -143481595 + (CAA)n Simple_repeat Simple_repeat 2 29 0 4040 260 130 53 chr6 45797959 45798683 -143480871 + L1MA2 LINE L1 948 1615 -5234 207 0 0 0 chr6 45798683 45798706 -143480848 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4040 260 130 53 chr6 45798706 45798740 -143480814 + L1MA2 LINE L1 1615 1645 -5204 1731 153 48 14 chr6 45798740 45799035 -143480519 + AluJo SINE Alu 1 305 -7 4040 260 130 53 chr6 45799035 45799159 -143480395 + L1MA2 LINE L1 1645 2058 -4791 977 173 24 12 chr6 45799160 45799328 -143480226 + FRAM SINE Alu 1 162 -14 27 49 0 0 chr6 45799328 45799369 -143480185 + AT_rich Low_complexity Low_complexity 1 41 0 554 175 0 10 chr6 45799374 45799477 -143480077 + L1MA2 LINE L1 2164 2265 -4584 210 37 0 0 chr6 45799478 45799505 -143480049 + (AGGGGG)n Simple_repeat Simple_repeat 3 29 0 1597 84 40 44 chr6 45799505 45799813 -143479741 + L1MA2 LINE L1 2203 2487 -4361 * 7117 105 22 14 chr6 45799812 45801197 -143478357 + L1MA2 LINE L1 5606 7006 0 4582 168 78 16 chr6 45801210 45802161 -143477393 + L1PB4 LINE L1 4547 5637 -519 2232 97 0 10 chr6 45802161 45802470 -143477084 + AluSc SINE Alu 1 306 -3 4582 168 78 16 chr6 45802470 45803025 -143476529 + L1PB4 LINE L1 5637 6156 0 401 248 29 22 chr6 45803025 45803162 -143476392 - L2 LINE L2 -613 2701 2564 2132 122 0 3 chr6 45803391 45803685 -143475869 + AluSx SINE Alu 1 293 -19 2202 83 3 41 chr6 45803827 45804141 -143475413 - AluSp SINE Alu -11 302 1 298 220 110 37 chr6 45804243 45804352 -143475202 + L1ME LINE L1 5578 5694 -427 303 148 19 0 chr6 45804585 45804639 -143474915 + L1MC5 LINE L1 7813 7867 -94 210 139 0 0 chr6 45806301 45806337 -143473217 + (TTC)n Simple_repeat Simple_repeat 2 37 0 692 160 65 35 chr6 45807293 45807462 -143472092 - L1MB2 LINE L1 -6 6165 5992 23 0 0 0 chr6 45807590 45807613 -143471941 + AT_rich Low_complexity Low_complexity 1 23 0 1639 194 7 0 chr6 45807618 45807897 -143471657 - AluJb SINE Alu -31 281 1 217 311 129 23 chr6 45807946 45808078 -143471476 - MIR SINE MIR -105 157 12 2495 57 0 0 chr6 45809350 45809647 -143469907 - AluSx SINE Alu -15 297 1 2407 71 0 3 chr6 45809687 45809984 -143469570 - AluY SINE Alu -15 296 1 1923 254 90 37 chr6 45810923 45811109 -143468445 + L1MC4 LINE L1 6766 6941 -1101 1705 114 149 4 chr6 45811109 45811371 -143468183 - AluSg1 SINE Alu -9 300 1 1923 254 90 37 chr6 45811371 45812030 -143467524 + L1MC4 LINE L1 6941 7656 -386 759 229 24 8 chr6 45812019 45812212 -143467342 + L1ME LINE L1 5414 5619 -547 * 1938 144 0 16 chr6 45812212 45812518 -143467036 + AluJb SINE Alu 1 301 -11 2441 253 75 24 chr6 45812532 45813418 -143466136 + L1MEc LINE L1 34 1023 -5373 2014 118 7 14 chr6 45813418 45813714 -143465840 + AluSg SINE Alu 1 294 -16 2441 253 75 24 chr6 45813714 45813860 -143465694 + L1MEc LINE L1 1023 1160 -5236 639 275 58 6 chr6 45813993 45814164 -143465390 + L1MC5 LINE L1 6645 6824 -1137 9415 139 82 39 chr6 45814213 45814666 -143464888 + L1M4c LINE L1 18 450 -5934 1997 134 14 3 chr6 45814666 45814957 -143464597 + AluSx SINE Alu 1 294 -18 9415 139 82 39 chr6 45814957 45815122 -143464432 + L1M4c LINE L1 450 606 -5778 1782 180 3 7 chr6 45815122 45815427 -143464127 + AluJo SINE Alu 1 304 -8 9415 139 82 39 chr6 45815427 45815647 -143463907 + L1M4c LINE L1 606 815 -5569 1542 178 36 46 chr6 45815647 45815950 -143463604 + AluJb SINE Alu 1 300 -12 9415 139 82 39 chr6 45815950 45816298 -143463256 + L1M4c LINE L1 815 1147 -5237 2373 97 10 0 chr6 45816298 45816607 -143462947 + AluSx SINE Alu 1 312 0 9415 139 82 39 chr6 45816607 45817273 -143462281 + L1M4c LINE L1 1147 1953 -4431 1753 217 28 13 chr6 45817306 45817772 -143461782 + L1M4c LINE L1 2415 2887 -3495 397 139 444 0 chr6 45817768 45817876 -143461678 + L1MB3 LINE L1 6016 6171 0 * 816 80 0 0 chr6 45817886 45817920 -143461634 + (TAG)n Simple_repeat Simple_repeat 1 147 0 816 80 0 0 chr6 45817920 45818033 -143461521 + (TAG)n Simple_repeat Simple_repeat 2 114 0 679 179 106 119 chr6 45818068 45818183 -143461371 + L1MC5 LINE L1 7603 7718 -243 1548 179 90 8 chr6 45818183 45818451 -143461103 - AluJo SINE Alu -11 291 2 679 179 106 119 chr6 45818451 45818647 -143460907 + L1MC5 LINE L1 7718 7910 -51 2245 93 0 0 chr6 45818684 45818964 -143460590 - AluSg SINE Alu -30 280 1 1807 120 102 4 chr6 45818994 45819268 -143460286 + AluSg SINE Alu 1 301 -9 2349 71 3 3 chr6 45819595 45819890 -143459664 - AluY SINE Alu -16 295 1 2048 83 4 0 chr6 45820576 45820828 -143458726 + AluSx SINE Alu 1 253 -59 351 0 0 0 chr6 45821118 45821157 -143458397 + (CA)n Simple_repeat Simple_repeat 2 40 0 288 0 0 0 chr6 45821156 45821188 -143458366 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 266 89 44 0 chr6 45821884 45821929 -143457625 + CT-rich Low_complexity Low_complexity 2 48 0 2137 104 3 3 chr6 45821940 45822237 -143457317 - AluSx SINE Alu -15 297 1 444 187 53 0 chr6 45823139 45823214 -143456340 + FRAM/FAM SINE Alu 1 78 -98 330 349 89 27 chr6 45823237 45823383 -143456171 - MIR3 SINE MIR -37 171 17 1642 95 126 70 chr6 45825225 45825359 -143454195 + AluSq SINE Alu 3 128 -185 2176 98 3 3 chr6 45825359 45825670 -143453884 + AluSx SINE Alu 1 311 0 2425 51 0 35 chr6 45825674 45825986 -143453568 + AluY SINE Alu 1 301 -10 1642 95 126 70 chr6 45825986 45826130 -143453424 + AluSq SINE Alu 130 303 -10 294 259 69 30 chr6 45826425 45826556 -143452998 + L1ME4a LINE L1 5984 6119 -2 2166 109 0 35 chr6 45827291 45827604 -143451950 + AluSq SINE Alu 1 302 -11 226 163 41 0 chr6 45827781 45827830 -143451724 - L1ME4a LINE L1 -5 6116 6066 233 135 0 0 chr6 45827854 45827891 -143451663 - L1ME4a LINE L1 -113 6008 5972 272 172 5 0 chr6 45827935 45827996 -143451558 - L1P5 LINE L1 -575 5579 5518 1858 158 0 0 chr6 45828242 45828508 -143451046 + AluSx SINE Alu 16 281 -31 395 16 62 0 chr6 45828511 45828575 -143450979 + (CAA)n Simple_repeat Simple_repeat 2 69 0 590 248 105 35 chr6 45828794 45829052 -143450502 + Charlie8 DNA MER1_type 1522 1797 -620 1876 168 0 0 chr6 45829060 45829352 -143450202 + AluJb SINE Alu 1 292 -20 2093 112 54 0 chr6 45829604 45829898 -143449656 + AluSg SINE Alu 1 310 0 268 258 122 77 chr6 45829914 45830421 -143449133 + HAL1 LINE L1 788 1317 -1190 753 275 174 31 chr6 45830449 45830903 -143448651 + HAL1 LINE L1 1405 1923 -584 297 0 0 0 chr6 45831293 45831326 -143448228 + (TG)n Simple_repeat Simple_repeat 2 34 0 3631 161 67 99 chr6 45831326 45832252 -143447302 + MER21A LTR ERV1 29 924 -7 1282 150 40 9 chr6 45832279 45832505 -143447049 + L1MB7 LINE L1 5471 5703 -481 2199 167 84 9 chr6 45832636 45833086 -143446468 + L1MB7 LINE L1 5688 6171 -13 1663 175 11 0 chr6 45833385 45833665 -143445889 - AluJb SINE Alu -25 287 5 2953 111 22 22 chr6 45833933 45834384 -143445170 + L1PB2 LINE L1 5696 6146 -5 1148 142 0 0 chr6 45834433 45834595 -143444959 + AluSg/x SINE Alu 127 288 -24 2159 106 10 0 chr6 45834740 45835032 -143444522 + AluSx SINE Alu 3 297 -15 235 266 16 16 chr6 45835087 45835151 -143444403 + L2 LINE L2 2782 2845 -469 448 213 244 63 chr6 45835160 45835381 -143444173 + L2 LINE L2 3002 3262 -51 2244 104 3 22 chr6 45835577 45835895 -143443659 + AluSx SINE Alu 1 312 0 526 255 74 46 chr6 45835970 45836186 -143443368 + MIR SINE MIR 11 232 -30 469 269 21 28 chr6 45836238 45836379 -143443175 - L2 LINE L2 -1 3312 3173 836 169 8 8 chr6 45836731 45836861 -143442693 + FLAM_A SINE Alu 1 130 -3 1602 168 34 81 chr6 45837019 45837429 -143442125 + MLT1B LTR MaLR 1 621 -5 195 397 51 0 chr6 45837429 45837507 -143442047 + L2 LINE L2 3127 3208 -64 1507 154 44 63 chr6 45837984 45838302 -143441252 + AluJo SINE Alu 1 312 0 930 135 0 23 chr6 45838854 45838987 -143440567 + FLAM_C SINE Alu 1 130 -3 2205 106 7 0 chr6 45839091 45839383 -143440171 + AluSx SINE Alu 5 298 -14 1393 221 12 0 chr6 45839703 45839961 -143439593 - AluJb SINE Alu -51 261 1 2354 95 6 19 chr6 45840376 45840693 -143438861 + AluSq SINE Alu 1 313 0 1548 171 38 51 chr6 45840714 45841030 -143438524 + AluJo SINE Alu 1 312 0 458 261 80 0 chr6 45841030 45841168 -143438386 + Charlie8 DNA MER1_type 93 241 -2176 953 246 60 47 chr6 45841502 45842058 -143437496 + L1MC5 LINE L1 6347 6925 -883 * 1420 194 52 60 chr6 45842025 45842082 -143437472 + L1MB8 LINE L1 5801 5857 -321 2073 132 0 0 chr6 45842082 45842370 -143437184 - AluSx SINE Alu -12 300 13 1420 194 52 60 chr6 45842370 45842693 -143436861 + L1MB8 LINE L1 5857 6178 0 861 153 89 52 chr6 45842720 45843021 -143436533 + L1MC5 LINE L1 6930 7309 -652 334 228 239 20 chr6 45843041 45843281 -143436273 + L1MC5 LINE L1 7493 7793 -168 2328 117 3 0 chr6 45843281 45843590 -143435964 + AluSq SINE Alu 1 310 -3 334 228 239 20 chr6 45843590 45843604 -143435950 + L1MC5 LINE L1 7793 7803 -158 1524 141 84 68 chr6 45843638 45844007 -143435547 + THE1C LTR MaLR 1 375 0 8450 122 125 34 chr6 45844007 45845455 -143434099 + THE1C-int LTR MaLR 1 1580 0 1832 119 74 80 chr6 45845455 45845832 -143433722 + THE1C LTR MaLR 1 375 0 2366 96 3 0 chr6 45845839 45846140 -143433414 - AluSp SINE Alu -11 302 1 8066 100 34 0 chr6 45846144 45847290 -143432264 + Tigger1 DNA MER2_type 653 1837 -581 941 83 0 0 chr6 45847290 45847410 -143432144 + FLAM_C SINE Alu 1 120 -23 28 0 0 0 chr6 45847421 45847449 -143432105 + AT_rich Low_complexity Low_complexity 1 28 0 856 188 0 0 chr6 45847454 45847587 -143431967 - FLAM_A SINE Alu 0 133 1 3283 129 61 48 chr6 45847587 45847909 -143431645 + Tigger1 DNA MER2_type 1823 2158 -260 1453 170 6 74 chr6 45847909 45848221 -143431333 + AluJo SINE Alu 1 291 -21 3283 129 61 48 chr6 45848221 45848486 -143431068 + Tigger1 DNA MER2_type 2158 2418 0 1743 167 42 3 chr6 45848641 45848929 -143430625 - AluJo SINE Alu -13 299 1 730 146 0 0 chr6 45849261 45849371 -143430183 + AluSg/x SINE Alu 193 302 -10 2340 109 3 0 chr6 45849374 45849677 -143429877 + AluSx SINE Alu 1 304 -8 2443 93 0 3 chr6 45849821 45850134 -143429420 - AluSp SINE Alu -1 312 1 756 242 73 50 chr6 45850340 45850642 -143428912 + L2 LINE L2 3003 3311 -2 2056 127 14 0 chr6 45850662 45850953 -143428601 - AluSq SINE Alu -18 295 1 2284 97 0 13 chr6 45850979 45851288 -143428266 + AluY SINE Alu 1 305 -6 319 234 37 28 chr6 45851345 45851452 -143428102 + L1ME LINE L1 5636 5743 -378 2332 93 0 0 chr6 45851548 45851850 -143427704 + AluY SINE Alu 1 302 -9 414 0 0 0 chr6 45851855 45851901 -143427653 + (CA)n Simple_repeat Simple_repeat 2 47 0 28 0 0 0 chr6 45851902 45851930 -143427624 + AT_rich Low_complexity Low_complexity 1 28 0 974 164 0 7 chr6 45851932 45852084 -143427470 + AluSq SINE Alu 134 284 -29 210 105 0 0 chr6 45852084 45852122 -143427432 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 2047 112 7 11 chr6 45852634 45852943 -143426611 + AluSx SINE Alu 1 308 0 295 240 190 66 chr6 45853198 45853319 -143426235 + MIR SINE MIR 15 150 -112 302 274 36 0 chr6 45853734 45853818 -143425736 - MIR SINE MIR -155 107 21 246 136 0 0 chr6 45854034 45854078 -143425476 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 2018 125 17 17 chr6 45854081 45854378 -143425176 + AluSx SINE Alu 6 302 -10 316 276 141 64 chr6 45856458 45856784 -143422770 - L1M2 LINE L1 -5756 1093 743 201 208 28 56 chr6 45856961 45857033 -143422521 + C-rich Low_complexity Low_complexity 3 72 0 189 107 0 0 chr6 45857274 45857302 -143422252 + MIR SINE MIR 116 143 -119 1119 139 115 0 chr6 45857792 45858000 -143421554 - MER58B DNA MER1_type -3 338 107 300 25 0 0 chr6 45858012 45858052 -143421502 - LTR46 LTR ERV1 0 460 421 854 196 12 12 chr6 45858052 45858215 -143421339 - AluJb SINE Alu -30 282 120 370 289 41 0 chr6 45858899 45859020 -143420534 + L2 LINE L2 3188 3313 0 2361 83 3 7 chr6 45859025 45859327 -143420227 + AluSc SINE Alu 1 301 -8 559 281 81 11 chr6 45859425 45859610 -143419944 - L3 LINE CR1 -1191 386 189 1261 197 44 12 chr6 45859820 45860069 -143419485 - AluJb SINE Alu -15 297 41 776 169 7 29 chr6 45860117 45860253 -143419301 + FLAM_C SINE Alu 1 133 0 870 179 106 0 chr6 45860817 45860996 -143418558 - LTR33 LTR ERVL -20 501 304 2341 67 0 44 chr6 45861020 45861335 -143418219 + AluSq SINE Alu 1 301 -12 1783 164 32 93 chr6 45861335 45861743 -143417811 - MLT1B LTR MaLR -7 383 1 995 163 109 10 chr6 45861791 45861993 -143417561 - LTR33 LTR ERVL -299 222 1 2273 66 31 0 chr6 45863018 45863306 -143416248 - AluY SINE Alu -14 297 1 1907 123 0 14 chr6 45863699 45863984 -143415570 + AluSx SINE Alu 6 286 -26 2141 106 0 0 chr6 45864343 45864644 -143414910 + AluSg SINE Alu 1 301 -9 416 234 190 57 chr6 45864668 45864826 -143414728 - MIR SINE MIR -81 181 3 249 348 4 85 chr6 45864833 45865069 -143414485 - L2 LINE L2 -115 3157 2941 1557 159 10 52 chr6 45865096 45865404 -143414150 + AluJo SINE Alu 1 295 -17 200 263 0 0 chr6 45865404 45865442 -143414112 + (CA)n Simple_repeat Simple_repeat 1 38 0 204 222 0 83 chr6 45865476 45865548 -143414006 - L2 LINE L2 -13 3300 3235 1312 181 4 4 chr6 45865627 45865864 -143413690 + L1M4 LINE L1 3952 4188 -1958 2362 196 154 28 chr6 45865865 45866626 -143412928 - Charlie2 DNA MER1_type -151 2711 1855 297 236 57 28 chr6 45866630 45866736 -143412818 - Charlie2 DNA MER1_type -2540 322 214 427 210 24 108 chr6 45866739 45866906 -143412648 + L2 LINE L2 3160 3312 -1 4719 119 115 134 chr6 45866942 45868343 -143411211 + pTR5 LTR ERV1 73 2400 -38 224 261 167 32 chr6 45868442 45868575 -143410979 + MIR SINE MIR 4 150 -64 210 237 0 0 chr6 45868846 45868884 -143410670 + MIR SINE MIR 114 151 -111 1094 73 0 0 chr6 45868884 45869020 -143410534 + AluSq/x SINE Alu 1 136 -177 2118 114 3 0 chr6 45869020 45869318 -143410236 + AluSx SINE Alu 1 299 -13 356 248 53 18 chr6 45869319 45869432 -143410122 + MIR SINE MIR 143 259 -3 189 292 186 18 chr6 45869839 45869952 -143409602 + L2 LINE L2 3141 3272 0 183 246 0 0 chr6 45870691 45870748 -143408806 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 1653 168 6 32 chr6 45870973 45871289 -143408265 - AluSx SINE Alu -4 308 1 972 260 83 60 chr6 45871294 45871622 -143407932 - L1MCc LINE L1 -4810 2312 1993 2288 95 0 0 chr6 45871622 45871918 -143407636 + AluSg SINE Alu 1 296 -14 972 260 83 60 chr6 45871918 45872571 -143406983 - L1MCc LINE L1 -5129 1993 1094 2189 125 27 35 chr6 45872801 45873168 -143406386 + THE1B LTR MaLR 1 364 0 830 158 0 15 chr6 45873320 45873453 -143406101 - FLAM_C SINE Alu -1 132 2 779 207 72 95 chr6 45873558 45873667 -143405887 - L1MC5 LINE L1 -397 7564 7454 844 159 0 0 chr6 45873667 45873799 -143405755 - FLAM_A SINE Alu -1 132 1 779 207 72 95 chr6 45873799 45873993 -143405561 - L1MC5 LINE L1 -507 7454 7268 394 229 0 0 chr6 45873997 45874067 -143405487 - MER2 DNA MER2_type -1 344 275 823 129 0 0 chr6 45874074 45874190 -143405364 + FLAM_C SINE Alu 9 124 -19 21 0 0 0 chr6 45874216 45874237 -143405317 + AT_rich Low_complexity Low_complexity 1 21 0 610 156 92 0 chr6 45874239 45874348 -143405206 + MLT1H LTR MaLR 431 549 0 221 303 15 15 chr6 45874404 45874470 -143405084 + L3 LINE CR1 1510 1575 -2 1666 106 76 53 chr6 45875133 45875436 -143404118 + THE1C LTR MaLR 1 310 -65 2716 85 6 0 chr6 45875437 45875790 -143403764 + THE1A LTR MaLR 1 355 0 12191 83 12 0 chr6 45875790 45877351 -143402203 + THE1A-int LTR MaLR 1 1580 0 2718 85 34 26 chr6 45877351 45877773 -143401781 + THE1A LTR MaLR 1 355 0 399 324 130 53 chr6 45878184 45878446 -143401108 + L2 LINE L2 2990 3271 -1 188 228 18 35 chr6 45878508 45878565 -143400989 + MIR SINE MIR 114 169 -93 1498 181 33 20 chr6 45880247 45880367 -143399187 + AluJb SINE Alu 2 119 -193 230 73 24 0 chr6 45880367 45880408 -143399146 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1498 181 33 20 chr6 45880408 45880586 -143398968 + AluJb SINE Alu 119 304 -8 37 32 0 16 chr6 45880704 45880721 -143398833 + AT_rich Low_complexity Low_complexity 1 17 -44 2061 129 0 0 chr6 45880721 45881007 -143398547 - AluSx SINE Alu -26 286 1 37 32 0 16 chr6 45881007 45881051 -143398503 + AT_rich Low_complexity Low_complexity 17 61 0 262 314 97 0 chr6 45881568 45881692 -143397862 + L2 LINE L2 3153 3288 -25 1234 301 51 13 chr6 45881718 45882089 -143397465 + L2 LINE L2 1955 2348 -966 1865 129 11 0 chr6 45882089 45882391 -143397163 - AluSx SINE Alu 0 305 1 1234 301 51 13 chr6 45882391 45882466 -143397088 + L2 LINE L2 2348 2419 -895 1495 203 7 7 chr6 45882556 45882847 -143396707 - AluJo SINE Alu -21 291 1 1946 144 0 7 chr6 45882882 45883188 -143396366 - AluSx SINE Alu -8 304 1 562 340 102 7 chr6 45883197 45883500 -143396054 + L1M4 LINE L1 4036 4367 -1779 1872 166 0 0 chr6 45883506 45883808 -143395746 + AluJb SINE Alu 1 302 -10 391 287 34 49 chr6 45883840 45884164 -143395390 + L1M4 LINE L1 4456 4774 -1372 2133 117 0 0 chr6 45884164 45884471 -143395083 + AluSx SINE Alu 1 307 -5 1343 164 71 61 chr6 45884646 45884957 -143394597 + MLT1A1 LTR MaLR 52 365 0 315 278 109 65 chr6 45884973 45885011 -143394543 + L1M4 LINE L1 4924 4959 -1187 2109 115 7 0 chr6 45885011 45885307 -143394247 + AluSg SINE Alu 3 300 -10 315 278 109 65 chr6 45885307 45885498 -143394056 + L1M4 LINE L1 4959 5163 -983 21 0 0 0 chr6 45885514 45885535 -143394019 + AT_rich Low_complexity Low_complexity 1 21 0 2059 63 49 11 chr6 45885667 45885954 -143393600 - AluSc SINE Alu -11 298 1 2075 111 10 0 chr6 45886153 45886442 -143393112 - AluSg SINE Alu -18 292 1 2016 137 7 0 chr6 45887427 45887733 -143391821 - AluSg SINE Alu -2 308 1 2299 95 0 0 chr6 45888591 45888895 -143390659 + AluSg SINE Alu 1 304 -6 319 312 113 7 chr6 45889254 45889395 -143390159 + MIR SINE MIR 92 247 -15 402 324 94 0 chr6 45889531 45889701 -143389853 - MIR3 SINE MIR -7 201 16 2163 121 0 0 chr6 45890520 45890825 -143388729 + AluSx SINE Alu 1 305 -7 1399 158 7 86 chr6 45891816 45892120 -143387434 + AluJb SINE Alu 1 280 -32 921 177 0 0 chr6 45892150 45892308 -143387246 + AluJb SINE Alu 148 305 -7 2149 125 3 0 chr6 45892495 45892800 -143386754 + AluSp SINE Alu 1 306 -7 1895 128 4 0 chr6 45892809 45893090 -143386464 + AluSp SINE Alu 12 293 -20 22 0 0 0 chr6 45893226 45893248 -143386306 + AT_rich Low_complexity Low_complexity 1 22 0 2154 94 7 3 chr6 45893464 45893763 -143385791 - AluSq SINE Alu -13 300 1 1282 101 6 6 chr6 45894075 45894253 -143385301 + AluSx SINE Alu 1 178 -134 801 113 9 0 chr6 45894365 45894480 -143385074 + AluSq/x SINE Alu 1 116 -197 1968 101 77 0 chr6 45895755 45896042 -143383512 - AluSg SINE Alu -1 309 1 1788 153 3 25 chr6 45896231 45896545 -143383009 + AluSx SINE Alu 1 307 -5 264 267 105 29 chr6 45897175 45897280 -143382274 + MIR SINE MIR 106 218 -44 2306 88 0 0 chr6 45897803 45898100 -143381454 + AluSg SINE Alu 1 297 -13 874 148 47 12 chr6 45898657 45898826 -143380728 - FRAM SINE Alu -8 168 1 706 152 8 53 chr6 45898868 45898988 -143380566 - REP3 LTR ERV -10 552 437 1510 214 80 35 chr6 45898988 45899473 -143380081 + MER84 LTR ERV1 1 507 0 706 152 8 53 chr6 45899473 45899484 -143380070 - REP3 LTR ERV -125 437 427 378 255 61 0 chr6 45899482 45899580 -143379974 + REP3 LTR ERV 352 455 -107 * 1752 161 7 3 chr6 45899784 45900082 -143379472 + AluJb SINE Alu 1 299 -13 392 285 120 72 chr6 45900095 45900222 -143379332 + L1ME4a LINE L1 5522 5642 -479 1880 160 0 0 chr6 45900222 45900516 -143379038 + AluSx SINE Alu 1 294 -18 392 285 120 72 chr6 45900516 45900542 -143379012 + L1ME4a LINE L1 5642 5665 -456 2030 133 0 3 chr6 45900542 45900843 -143378711 + AluSx SINE Alu 2 301 -11 392 285 120 72 chr6 45900843 45900972 -143378582 + L1ME4a LINE L1 5665 5756 -365 395 201 183 43 chr6 45900980 45901144 -143378410 + L1ME4a LINE L1 5934 6120 -1 2452 67 0 9 chr6 45901254 45901569 -143377985 + AluSp SINE Alu 1 312 -1 2042 94 0 37 chr6 45901580 45901877 -143377677 + AluSx SINE Alu 15 300 -12 1794 124 29 0 chr6 45903708 45903982 -143375572 - AluSx SINE Alu -7 305 24 1943 119 0 0 chr6 45904006 45904283 -143375271 - AluSx SINE Alu -16 296 20 342 234 0 0 chr6 45904424 45904488 -143375066 + L1MC4 LINE L1 6640 6703 -1339 309 254 16 0 chr6 45904457 45904520 -143375034 - L1MC4 LINE L1 -1340 6702 6639 * 256 313 24 12 chr6 45904942 45905025 -143374529 + L2 LINE L2 3229 3312 -1 2244 104 0 0 chr6 45905175 45905483 -143374071 + AluSc SINE Alu 1 308 -1 2057 88 7 7 chr6 45906601 45906915 -143372639 + AluSq SINE Alu 1 314 0 466 233 92 37 chr6 45907437 45907600 -143371954 - MIR SINE MIR -70 192 21 698 155 95 0 chr6 45908150 45908266 -143371288 + FLAM_C SINE Alu 7 133 -10 1644 92 18 4 chr6 45909297 45909524 -143370030 - MER30 DNA MER1_type 0 230 1 2204 113 0 0 chr6 45909893 45910203 -143369351 + AluSx SINE Alu 1 310 -2 1840 142 0 65 chr6 45910591 45910915 -143368639 - AluSx SINE Alu -9 303 1 2331 105 3 0 chr6 45911489 45911793 -143367761 + AluSp SINE Alu 1 305 -8 2310 102 7 0 chr6 45912001 45912295 -143367259 + AluSq SINE Alu 1 296 -17 2278 68 34 14 chr6 45912408 45912701 -143366853 - AluY SINE Alu -12 299 1 21 0 0 0 chr6 45913300 45913321 -143366233 + AT_rich Low_complexity Low_complexity 1 21 0 803 181 73 136 chr6 45913544 45913660 -143365894 + L1M4 LINE L1 3556 3678 -2468 2332 101 0 3 chr6 45913660 45913958 -143365596 + AluSx SINE Alu 1 297 -15 803 181 73 136 chr6 45913958 45914195 -143365359 + L1M4 LINE L1 3678 3887 -2259 1761 169 12 35 chr6 45914690 45915009 -143364545 - AluJb SINE Alu 0 312 1 24 32 0 0 chr6 45915017 45915048 -143364506 + AT_rich Low_complexity Low_complexity 1 31 0 2478 64 3 0 chr6 45915053 45915349 -143364205 + AluY SINE Alu 1 297 -14 2167 140 7 0 chr6 45915823 45916130 -143363424 - AluSx SINE Alu -3 309 1 334 317 65 25 chr6 45916176 45916375 -143363179 + MIR SINE MIR 3 209 -53 2254 89 10 0 chr6 45916590 45916883 -143362671 + AluSx SINE Alu 3 298 -14 1728 169 0 37 chr6 45917216 45917542 -143362012 + AluJo SINE Alu 1 315 0 21 57 0 0 chr6 45918352 45918387 -143361167 + AT_rich Low_complexity Low_complexity 1 35 0 2203 119 0 10 chr6 45919402 45919712 -143359842 - AluSq SINE Alu -6 307 1 2137 141 0 6 chr6 45920168 45920481 -143359073 - AluSx SINE Alu -1 311 1 3886 119 23 16 chr6 45920610 45921216 -143358338 + MER4B LTR ERV1 1 610 0 2511 87 0 0 chr6 45921270 45921579 -143357975 + AluSg SINE Alu 1 309 -1 2767 117 10 48 chr6 45921746 45921882 -143357672 - L1MA8 LINE L1 0 6291 6151 2285 115 3 0 chr6 45921882 45922186 -143357368 - AluSp SINE Alu -3 310 6 2767 117 10 48 chr6 45922186 45922545 -143357009 - L1MA8 LINE L1 -140 6151 5815 29 0 0 0 chr6 45922545 45922574 -143356980 + AT_rich Low_complexity Low_complexity 1 29 0 1095 114 8 185 chr6 45922598 45922886 -143356668 - L1MA8 LINE L1 -385 5789 5585 2254 94 10 3 chr6 45923231 45923528 -143356026 - AluY SINE Alu -12 299 1 248 238 163 12 chr6 45923584 45923664 -143355890 - MLT1J LTR MaLR -315 196 105 2393 94 3 0 chr6 45923761 45924068 -143355486 - AluSx SINE Alu -4 308 1 2160 138 0 3 chr6 45924209 45924521 -143355033 + AluSx SINE Alu 1 311 -1 181 230 68 68 chr6 45924545 45924619 -143354935 + MIR SINE MIR 56 129 -133 1149 201 40 102 chr6 45924634 45924699 -143354855 - L1ME2 LINE L1 -1 6163 6096 2454 84 0 0 chr6 45924699 45924997 -143354557 - AluY SINE Alu -13 298 1 1149 201 40 102 chr6 45924997 45925334 -143354220 - L1ME2 LINE L1 -68 6096 5786 193 29 29 29 chr6 45925743 45925778 -143353776 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2285 110 3 0 chr6 45925785 45926094 -143353460 - AluSx SINE Alu -2 310 1 24 0 0 0 chr6 45926362 45926386 -143353168 + AT_rich Low_complexity Low_complexity 1 24 0 691 146 142 78 chr6 45926836 45926976 -143352578 + L1MA9 LINE L1 6060 6220 -92 2255 109 7 10 chr6 45926976 45927279 -143352275 + AluSx SINE Alu 1 302 -10 691 146 142 78 chr6 45927279 45927357 -143352197 + L1MA9 LINE L1 6220 6292 -20 1553 166 30 53 chr6 45928861 45929163 -143350391 - AluJo SINE Alu -17 295 1 24 53 0 0 chr6 45929417 45929455 -143350099 + AT_rich Low_complexity Low_complexity 1 38 0 799 185 0 0 chr6 45929601 45929731 -143349823 + FLAM_C SINE Alu 1 130 -3 1001 64 0 0 chr6 45929960 45930085 -143349469 - AluY SINE Alu 0 311 187 2206 175 18 0 chr6 45930087 45930486 -143349068 - L1 LINE L1 -1101 5045 4640 1702 142 0 4 chr6 45930521 45930768 -143348786 - AluJo SINE Alu -4 308 63 2521 170 61 50 chr6 45931748 45931990 -143347564 + L1MB5 LINE L1 5577 5815 -359 2002 152 3 3 chr6 45931990 45932292 -143347262 + AluJb SINE Alu 1 302 -10 2521 170 61 50 chr6 45932292 45932578 -143346976 + L1MB5 LINE L1 5815 6114 -60 2190 128 0 0 chr6 45932578 45932883 -143346671 - AluSx SINE Alu -7 305 1 2521 170 61 50 chr6 45932883 45932913 -143346641 + L1MB5 LINE L1 6114 6142 -32 1579 149 21 43 chr6 45932913 45933195 -143346359 - AluJo SINE Alu -35 277 2 1330 135 14 0 chr6 45933202 45933409 -143346145 - Tigger7 DNA MER2_type -253 480 271 228 246 29 0 chr6 45933544 45933613 -143345941 + L1 LINE L1 4370 4440 -1706 1633 137 113 103 chr6 45933906 45934242 -143345312 - MER66A LTR ERV1 -40 438 96 1780 172 0 3 chr6 45934242 45934532 -143345022 - AluJb SINE Alu -23 289 1 1633 137 113 103 chr6 45934532 45934603 -143344951 - MER66A LTR ERV1 -382 96 27 2085 178 35 21 chr6 45935507 45935929 -143343625 + MLT1C LTR MaLR 39 466 -1 2020 141 0 10 chr6 45936020 45936319 -143343235 + AluJb SINE Alu 1 296 -16 457 84 0 0 chr6 45936384 45936455 -143343099 - Alu SINE Alu 0 312 242 1855 168 7 13 chr6 45936645 45936949 -143342605 + AluJb SINE Alu 1 302 -10 828 149 8 15 chr6 45936985 45937119 -143342435 + FLAM_C SINE Alu 1 133 0 2135 170 19 4 chr6 45937624 45938205 -143341349 + L1MC/D LINE L1 5048 5637 -707 381 177 0 0 chr6 45938205 45938284 -143341270 + (TG)n Simple_repeat Simple_repeat 2 80 0 783 194 0 0 chr6 45938289 45938413 -143341141 + MER2 DNA MER2_type 13 136 -209 1180 195 15 5 chr6 45938433 45938638 -143340916 - AluJb SINE Alu -24 288 82 534 80 11 23 chr6 45938639 45938727 -143340827 + MER2 DNA MER2_type 125 211 -134 185 94 28 66 chr6 45938753 45938859 -143340695 + T-rich Low_complexity Low_complexity 4 105 0 451 138 15 0 chr6 45938860 45938925 -143340629 + MER2 DNA MER2_type 279 344 -1 262 208 144 64 chr6 45938951 45939076 -143340478 + HAL1b LINE L1 201 335 -1013 22 94 0 0 chr6 45939186 45939250 -143340304 + AT_rich Low_complexity Low_complexity 1 64 0 207 186 0 0 chr6 45939250 45939293 -143340261 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2730 101 5 16 chr6 45939552 45939929 -143339625 + THE1C LTR MaLR 3 375 0 222 37 0 0 chr6 45939998 45940025 -143339529 + (CA)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr6 45940148 45940170 -143339384 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 45940240 45940261 -143339293 + AT_rich Low_complexity Low_complexity 1 21 0 1882 267 120 51 chr6 45940307 45940996 -143338558 - L1ME LINE L1 -4760 1322 682 2261 114 0 3 chr6 45940996 45941304 -143338250 - AluSc SINE Alu -2 307 1 1882 267 120 51 chr6 45941304 45941951 -143337603 - L1ME LINE L1 -5400 682 6 483 324 53 0 chr6 45941995 45942220 -143337334 - L2 LINE L2 -1036 2278 2042 242 315 126 0 chr6 45942241 45942368 -143337186 + MIR SINE MIR 106 248 -14 2267 114 3 0 chr6 45942769 45943066 -143336488 + AluSx SINE Alu 1 298 -14 1494 143 5 0 chr6 45943075 45943291 -143336263 + AluSq SINE Alu 1 217 -96 237 274 49 10 chr6 45943388 45943490 -143336064 + L1 LINE L1 3425 3530 -2616 461 171 0 45 chr6 45943528 45943616 -143335938 + AluSg/x SINE Alu 203 286 -24 2133 123 45 31 chr6 45943629 45943988 -143335566 - THE1B LTR MaLR 0 364 1 269 175 145 9 chr6 45944006 45944119 -143335435 + L1MC3 LINE L1 6964 7097 -688 347 210 98 54 chr6 45944119 45944212 -143335342 + MLT1F1 LTR MaLR 35 170 -379 2959 154 17 84 chr6 45944212 45944683 -143334871 + L1MC3 LINE L1 7191 7614 -171 2289 101 3 0 chr6 45944683 45944980 -143334574 + AluSx SINE Alu 1 298 -14 2959 154 17 84 chr6 45944980 45945112 -143334442 + L1MC3 LINE L1 7614 7753 -32 730 200 0 8 chr6 45945136 45945266 -143334288 - FLAM_A SINE Alu -1 132 4 414 0 0 0 chr6 45945278 45945324 -143334230 + (TG)n Simple_repeat Simple_repeat 2 47 0 220 321 0 0 chr6 45945627 45945680 -143333874 + polypurine Low_complexity Low_complexity 4 56 0 2187 139 45 6 chr6 45946384 45946737 -143332817 + MLT2C2 LTR ERVL 42 408 -56 403 84 53 0 chr6 45946740 45946835 -143332719 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 9101 42 4 1 chr6 45946857 45947923 -143331631 + MER11C LTR ERVK 1 1069 -2 232 155 56 14 chr6 45947927 45947998 -143331556 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 421 59 0 0 chr6 45948011 45948062 -143331492 + MLT2C2 LTR ERVL 414 464 0 222 314 0 14 chr6 45948062 45948132 -143331422 - MIR SINE MIR -177 85 17 296 248 248 0 chr6 45949251 45949368 -143330186 - MIR SINE MIR 0 262 117 1580 122 0 26 chr6 45949505 45949735 -143329819 + AluJo SINE Alu 85 308 -4 1113 270 178 15 chr6 45949921 45950450 -143329104 - MLT1L LTR MaLR 0 615 1 184 129 0 0 chr6 45951009 45951040 -143328514 + MIR SINE MIR 112 142 -66 2173 133 18 18 chr6 45951128 45951467 -143328087 + MER1B DNA MER1_type 1 339 0 1145 212 117 35 chr6 45951687 45952088 -143327466 + Charlie4a DNA MER1_type 6 439 -69 1176 151 0 6 chr6 45952088 45952260 -143327294 + AluJb SINE Alu 131 301 -11 375 280 32 0 chr6 45953996 45954089 -143325465 + MER103 DNA DNA 2 97 -69 200 240 120 13 chr6 45954490 45954565 -143324989 + MIR SINE MIR 41 123 -139 2364 90 10 3 chr6 45954569 45954869 -143324685 - AluSx SINE Alu -10 302 1 1472 169 68 4 chr6 45954874 45955153 -143324401 - L1MC2 LINE L1 -20 6324 6028 1726 139 0 79 chr6 45955170 45955487 -143324067 + AluJb SINE Alu 11 302 -10 198 194 0 0 chr6 45955488 45955524 -143324030 + MIR SINE MIR 110 145 -63 477 205 94 8 chr6 45955683 45955800 -143323754 + MER5A DNA MER1_type 63 189 0 1402 219 142 19 chr6 45956164 45956580 -143322974 + MLT1C LTR MaLR 1 467 0 2312 94 10 3 chr6 45958280 45958578 -143320976 - AluSx SINE Alu -8 304 5 1698 157 70 0 chr6 45958586 45958726 -143320828 - AluJo SINE Alu -5 307 178 2502 73 0 0 chr6 45958726 45959027 -143320527 - AluY SINE Alu -10 301 1 1698 157 70 0 chr6 45959027 45959173 -143320381 - AluJo SINE Alu -134 178 1 592 214 50 22 chr6 45959786 45959968 -143319586 + MIR3 SINE MIR 15 201 -7 25 0 0 0 chr6 45961091 45961116 -143318438 + AT_rich Low_complexity Low_complexity 1 25 0 573 181 0 71 chr6 45961125 45961219 -143318335 + FLAM_C SINE Alu 18 102 -210 2370 103 0 3 chr6 45961219 45961529 -143318025 - AluSx SINE Alu -3 309 1 573 181 0 71 chr6 45961529 45961561 -143317993 + FLAM_C SINE Alu 102 135 -177 1368 209 18 18 chr6 45961563 45961845 -143317709 + AluJo SINE Alu 1 282 -30 820 168 35 0 chr6 45961707 45961850 -143317704 + AluJo/FRAM SINE Alu 140 287 -25 23 33 0 0 chr6 45961848 45961878 -143317676 + AT_rich Low_complexity Low_complexity 1 30 0 * 210 37 0 0 chr6 45961917 45961944 -143317610 + (TTG)n Simple_repeat Simple_repeat 1 27 0 329 297 231 28 chr6 45962130 45962693 -143316861 + L2 LINE L2 1713 2389 -925 637 298 164 0 chr6 45964285 45964510 -143315044 + MIR SINE MIR 1 262 0 209 283 160 0 chr6 45964543 45964649 -143314905 + MIR SINE MIR 50 172 -90 216 227 62 31 chr6 45965228 45965325 -143314229 + MIR3 SINE MIR 74 173 -35 22 35 0 0 chr6 45965519 45965548 -143314006 + GC_rich Low_complexity Low_complexity 1 29 0 36 70 0 0 chr6 45965741 45965812 -143313742 + GC_rich Low_complexity Low_complexity 1 71 0 484 170 206 43 chr6 45966174 45966315 -143313239 - MER5A DNA MER1_type 0 189 26 535 164 118 111 chr6 45966333 45966523 -143313031 - L1MC5 LINE L1 -85 7876 7682 1805 83 80 0 chr6 45966523 45966787 -143312767 - AluSg1 SINE Alu -24 285 1 535 164 118 111 chr6 45966787 45966858 -143312696 - L1MC5 LINE L1 -279 7682 7613 2159 108 0 0 chr6 45966866 45967163 -143312391 - AluSx SINE Alu -15 297 1 1018 216 66 9 chr6 45967751 45967978 -143311576 - MIR SINE MIR -22 240 1 536 239 43 14 chr6 45968831 45968969 -143310585 + MIR SINE MIR 13 154 -108 221 232 12 73 chr6 45968972 45969054 -143310500 - MIR SINE MIR -32 230 154 2954 188 41 7 chr6 45969055 45969636 -143309918 - MER90 LTR ERV1 -2 612 12 555 245 14 22 chr6 45969653 45969792 -143309762 - MIR SINE MIR -108 154 17 620 279 29 17 chr6 45970286 45970458 -143309096 + MIR SINE MIR 64 237 -25 1744 125 54 14 chr6 45970677 45970957 -143308597 + AluJb SINE Alu 1 291 -21 537 224 161 6 chr6 45970996 45971170 -143308384 - L2 LINE L2 -147 3166 2966 2212 66 42 0 chr6 45971333 45971619 -143307935 - AluSx SINE Alu -14 298 1 2156 103 0 0 chr6 45971780 45972071 -143307483 + AluSq SINE Alu 1 291 -22 455 157 11 0 chr6 45972075 45972164 -143307390 + GA-rich Low_complexity Low_complexity 4 93 0 211 204 0 20 chr6 45972181 45972230 -143307324 + C-rich Low_complexity Low_complexity 5 52 0 393 254 87 22 chr6 45972535 45972673 -143306881 + L2 LINE L2 3121 3267 -5 279 173 0 0 chr6 45973116 45973168 -143306386 + CT-rich Low_complexity Low_complexity 4 55 0 511 243 97 40 chr6 45973533 45973759 -143305795 + L2 LINE L2 2994 3232 -40 360 273 0 40 chr6 45974156 45974255 -143305299 + MIR SINE MIR 44 138 -70 965 240 41 8 chr6 45974257 45974499 -143305055 - MIR SINE MIR -5 257 8 247 321 113 0 chr6 45975413 45975519 -143304035 - L2 LINE L2 -40 3232 3115 241 234 96 21 chr6 45975529 45975623 -143303931 + L1ME LINE L1 5534 5634 -487 964 207 14 24 chr6 45976011 45976219 -143303335 - MIR SINE MIR -21 241 36 1028 165 21 21 chr6 45976435 45976629 -143302925 - MER20 DNA MER1_type -4 215 22 385 247 30 42 chr6 45976661 45976827 -143302727 - L1ME3 LINE L1 -333 5829 5666 363 245 153 0 chr6 45977887 45977985 -143301569 + L2 LINE L2 3201 3313 0 328 322 0 0 chr6 45978384 45978471 -143301083 - L2 LINE L2 0 3313 3227 231 180 213 16 chr6 45978506 45978567 -143300987 - MIR SINE MIR -16 246 174 300 283 69 44 chr6 45978748 45978907 -143300647 - L2 LINE L2 -193 3079 2917 24 32 0 0 chr6 45979230 45979261 -143300293 + AT_rich Low_complexity Low_complexity 1 31 0 218 160 20 20 chr6 45979456 45979506 -143300048 + GA-rich Low_complexity Low_complexity 4 53 0 1937 180 133 85 chr6 45979601 45980138 -143299416 + MER20B DNA MER1_type 35 616 -167 1677 146 3 45 chr6 45980138 45980303 -143299251 - AluJb SINE Alu -16 296 148 1710 112 51 61 chr6 45980303 45980615 -143298939 - AluSc SINE Alu 0 309 1 1677 146 3 45 chr6 45980615 45980758 -143298796 - AluJb SINE Alu -164 148 1 1937 180 133 85 chr6 45980758 45980935 -143298619 + MER20B DNA MER1_type 616 783 0 2299 80 0 3 chr6 45981626 45981926 -143297628 - AluSq SINE Alu -14 299 1 1240 161 9 40 chr6 45982034 45982257 -143297297 + MER20 DNA MER1_type 4 219 0 450 248 34 0 chr6 45982754 45982871 -143296683 - L1MC/D LINE L1 -1999 5809 5689 1290 121 60 19 chr6 45982892 45983107 -143296447 - AluJo SINE Alu -3 309 86 2360 77 0 0 chr6 45984039 45984336 -143295218 - AluY SINE Alu -14 297 1 1627 211 27 12 chr6 45984882 45985218 -143294336 - MER58B DNA MER1_type 0 341 1 225 180 0 0 chr6 45987643 45987693 -143291861 + (CA)n Simple_repeat Simple_repeat 2 51 0 300 260 136 19 chr6 45988227 45988381 -143291173 + MIR SINE MIR 20 191 -71 258 32 0 0 chr6 45988960 45988991 -143290563 + (TG)n Simple_repeat Simple_repeat 2 32 0 681 196 7 20 chr6 45989015 45989168 -143290386 - L1PB4 LINE L1 0 6156 6006 594 239 169 117 chr6 45989471 45990337 -143289217 - L1MC5 LINE L1 -1 8041 7145 732 244 12 24 chr6 45990850 45991014 -143288540 + FRAM SINE Alu 1 158 -18 2204 109 0 0 chr6 45991574 45991877 -143287677 + AluY SINE Alu 1 303 -8 1406 190 25 15 chr6 45992625 45992899 -143286655 + AluJo SINE Alu 2 278 -34 270 0 0 0 chr6 45992908 45992938 -143286616 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 286 306 36 18 chr6 45994194 45994305 -143285249 + MIR SINE MIR 149 261 -1 1644 128 9 94 chr6 45994451 45994771 -143284783 + AluJb SINE Alu 3 295 -17 1500 184 14 7 chr6 45994815 45995103 -143284451 - AluJo SINE Alu -22 290 1 843 210 6 6 chr6 45997710 45997877 -143281677 - FRAM SINE Alu -16 160 1 351 265 41 10 chr6 45998949 45999047 -143280507 + MIR SINE MIR 40 140 -68 232 286 0 0 chr6 45999996 46000052 -143279502 + (CACG)n Simple_repeat Simple_repeat 2 57 0 221 143 0 104 chr6 46000307 46000384 -143279170 + (CAAAAA)n Simple_repeat Simple_repeat 3 71 0 572 257 151 32 chr6 46001302 46001586 -143277968 + L2 LINE L2 2982 3299 -14 721 178 132 17 chr6 46001793 46001967 -143277587 + MER58A DNA MER1_type 29 222 -2 2462 55 0 7 chr6 46002514 46002823 -143276731 - AluY SINE Alu -4 307 1 210 118 0 0 chr6 46004392 46004426 -143275128 + (A)n Simple_repeat Simple_repeat 1 34 0 1648 74 0 5 chr6 46005518 46005733 -143273821 + AluSg/x SINE Alu 85 298 -14 828 162 5 108 chr6 46005751 46005936 -143273618 + AluSg/x SINE Alu 132 297 -13 25035 155 32 21 chr6 46006703 46007523 -143272031 - L1PA10 LINE L1 -1 6482 5672 2273 91 0 0 chr6 46007523 46007820 -143271734 - AluY SINE Alu -14 297 1 25035 155 32 21 chr6 46007820 46013216 -143266338 - L1PA10 LINE L1 -811 5672 3 5407 169 43 46 chr6 46013425 46013463 -143266091 + L1MB4 LINE L1 3942 3979 -2201 2109 148 87 8 chr6 46013463 46013856 -143265698 + MSTB LTR MaLR 1 424 -2 5407 169 43 46 chr6 46013856 46016024 -143263530 + L1MB4 LINE L1 3979 6132 -48 2130 102 32 0 chr6 46016024 46016308 -143263246 + AluSx SINE Alu 1 293 -19 5407 169 43 46 chr6 46016308 46016350 -143263204 + L1MB4 LINE L1 6132 6173 -7 400 197 8 86 chr6 46016425 46016542 -143263012 - MER3 DNA MER1_type -96 113 6 1353 98 89 14 chr6 46016646 46016860 -143262694 - MER30 DNA MER1_type 0 230 1 305 200 0 17 chr6 46017052 46017112 -143262442 + MIR3 SINE MIR 111 169 -39 330 272 19 19 chr6 46017261 46017364 -143262190 + MER5B DNA MER1_type 75 177 -1 859 260 57 0 chr6 46017953 46018180 -143261374 - MIR SINE MIR -21 241 2 1207 230 65 43 chr6 46020624 46021011 -143258543 + L1ME1 LINE L1 5625 6023 -143 2393 95 0 0 chr6 46021011 46021316 -143258238 - AluY SINE Alu -6 305 1 1207 230 65 43 chr6 46021316 46021346 -143258208 + L1ME1 LINE L1 6023 6051 -115 2278 106 0 3 chr6 46021347 46021650 -143257904 + AluSc SINE Alu 1 302 -7 22 70 0 0 chr6 46021931 46021974 -143257580 + AT_rich Low_complexity Low_complexity 1 43 0 604 233 171 21 chr6 46022904 46023144 -143256410 + L1MC5 LINE L1 7607 7882 -79 2229 96 6 13 chr6 46023463 46023776 -143255778 - AluY SINE Alu 0 311 1 1519 153 46 23 chr6 46023909 46024170 -143255384 - AluJo SINE Alu -7 305 39 585 187 154 0 chr6 46024275 46024398 -143255156 + FLAM_C SINE Alu 1 142 -1 2341 97 0 0 chr6 46024911 46025210 -143254344 - AluSx SINE Alu -13 299 1 575 282 31 71 chr6 46025721 46025976 -143253578 - MIR SINE MIR -4 258 14 22 0 0 0 chr6 46026357 46026379 -143253175 + AT_rich Low_complexity Low_complexity 1 22 0 210 71 0 0 chr6 46026533 46026561 -143252993 + (GA)n Simple_repeat Simple_repeat 2 29 0 194 81 27 0 chr6 46027136 46027173 -143252381 + (TAAAG)n Simple_repeat Simple_repeat 3 40 0 1139 227 72 63 chr6 46027773 46028415 -143251139 + L2 LINE L2 2649 3290 -23 243 355 122 41 chr6 46028831 46029028 -143250526 - L2 LINE L2 -54 3218 3006 297 75 0 0 chr6 46029479 46029519 -143250035 + (CA)n Simple_repeat Simple_repeat 2 41 0 365 281 83 0 chr6 46030041 46030162 -143249392 + MIR SINE MIR 82 212 -50 360 0 0 0 chr6 46030713 46030753 -143248801 + (CA)n Simple_repeat Simple_repeat 2 41 0 667 269 79 36 chr6 46031083 46031388 -143248166 - L2 LINE L2 -192 3121 2804 271 270 40 14 chr6 46031463 46031537 -143248017 + L2 LINE L2 3229 3304 -9 992 198 12 0 chr6 46031987 46032154 -143247400 + AluJo SINE Alu 5 173 -139 264 30 0 0 chr6 46032163 46032196 -143247358 + (CA)n Simple_repeat Simple_repeat 2 34 0 1756 176 71 0 chr6 46032635 46032683 -143246871 + MER7A DNA MER2_type 2 45 -2993 1629 173 7 11 chr6 46032683 46032955 -143246599 - AluJb SINE Alu -41 271 1 1756 176 71 0 chr6 46032955 46033230 -143246324 + MER7A DNA MER2_type 45 346 0 2328 125 0 0 chr6 46033303 46033615 -143245939 + AluSx SINE Alu 1 312 0 233 191 11 128 chr6 46033825 46033919 -143245635 + Charlie8 DNA MER1_type 1346 1428 -989 1760 165 7 10 chr6 46033985 46034282 -143245272 + AluSx SINE Alu 1 296 -16 411 266 66 2 chr6 46034417 46034530 -143245024 - MIR3 SINE MIR -36 172 53 285 75 0 0 chr6 46034768 46034808 -143244746 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 255 300 30 20 chr6 46036097 46036197 -143243357 + LTR16C LTR ERVL 316 416 -75 688 190 0 0 chr6 46036444 46036560 -143242994 + FLAM_A SINE Alu 1 116 -17 255 31 0 0 chr6 46036565 46036597 -143242957 + (CAA)n Simple_repeat Simple_repeat 2 33 0 28 29 0 0 chr6 46036979 46037014 -143242540 + AT_rich Low_complexity Low_complexity 1 35 0 2380 65 0 29 chr6 46037071 46037378 -143242176 + AluSx SINE Alu 1 298 -14 1370 165 75 15 chr6 46037378 46037644 -143241910 - AluJo SINE Alu -30 282 1 1232 104 6 0 chr6 46038526 46038689 -143240865 - AluSp SINE Alu -14 299 136 263 187 66 33 chr6 46038849 46038940 -143240614 - L1ME4a LINE L1 -73 6048 5955 334 296 87 20 chr6 46039050 46039246 -143240308 - L1ME4a LINE L1 -385 5736 5528 234 378 0 0 chr6 46039757 46039839 -143239715 + L2 LINE L2 3230 3311 -2 192 172 0 103 chr6 46039844 46039902 -143239652 + MIR SINE MIR 95 146 -62 876 113 0 70 chr6 46040469 46040611 -143238943 - FLAM_C SINE Alu -1 132 1 24 53 0 0 chr6 46042900 46042938 -143236616 + AT_rich Low_complexity Low_complexity 1 38 0 250 234 54 27 chr6 46043661 46043772 -143235782 - L1ME4a LINE L1 -49 6072 5959 730 178 81 22 chr6 46043779 46043964 -143235590 - MER58A DNA MER1_type 0 224 29 180 308 170 51 chr6 46044119 46044372 -143235182 - L2 LINE L2 -88 3225 2943 * 792 239 61 65 chr6 46044367 46044630 -143234924 - MIR SINE MIR 0 262 1 274 220 23 130 chr6 46044636 46044813 -143234741 - L2 LINE L2 -335 2937 2795 2077 94 31 0 chr6 46044854 46045142 -143234412 + AluSq SINE Alu 2 298 -15 1957 268 128 132 chr6 46045153 46047785 -143231769 + L2 LINE L2 87 2728 -585 1529 134 38 80 chr6 46047785 46047918 -143231636 + AluJo SINE Alu 2 139 -173 2058 142 3 13 chr6 46047918 46048229 -143231325 + AluSx SINE Alu 1 308 -4 2174 76 62 28 chr6 46048235 46048524 -143231030 + AluSq SINE Alu 1 299 -14 1529 134 38 80 chr6 46048524 46048696 -143230858 + AluJo SINE Alu 144 301 -11 1957 268 128 132 chr6 46048696 46049020 -143230534 + L2 LINE L2 2728 3039 -274 183 300 38 25 chr6 46049198 46049278 -143230276 + MIR SINE MIR 55 135 -73 480 274 123 41 chr6 46049604 46049823 -143229731 + MIR SINE MIR 8 244 -18 2518 68 0 3 chr6 46050423 46050734 -143228820 - AluY SINE Alu -1 310 1 1687 183 20 7 chr6 46051116 46051411 -143228143 - AluJb SINE Alu -13 299 1 811 143 8 0 chr6 46051541 46051667 -143227887 - FLAM_C SINE Alu -5 128 2 2462 93 3 0 chr6 46052151 46052463 -143227091 + AluSp SINE Alu 1 313 0 1713 158 0 40 chr6 46053119 46053416 -143226138 - AluJb SINE Alu -14 298 14 1704 158 3 56 chr6 46053461 46053784 -143225770 + AluJo SINE Alu 2 307 -5 322 315 165 0 chr6 46054015 46054142 -143225412 + MER5B DNA MER1_type 29 176 -2 1014 170 71 42 chr6 46055906 46056118 -143223436 + MER20 DNA MER1_type 2 219 0 374 153 0 0 chr6 46056125 46056184 -143223370 + Tigger4(Zombi) DNA MER2_type 1 59 -2672 2262 99 31 0 chr6 46056244 46056538 -143223016 - AluSx SINE Alu -9 303 1 180 77 0 0 chr6 46056764 46056790 -143222764 + (CA)n Simple_repeat Simple_repeat 2 27 0 944 259 44 57 chr6 46057718 46058236 -143221318 + L2 LINE L2 2687 3197 -116 1464 151 19 98 chr6 46058236 46058561 -143220993 - AluJb SINE Alu -13 299 1 944 259 44 57 chr6 46058561 46058653 -143220901 + L2 LINE L2 3197 3289 -24 3564 137 3 64 chr6 46059013 46059219 -143220335 - Tigger1 DNA MER2_type 0 2418 2201 2085 121 0 3 chr6 46059219 46059501 -143220053 + AluSx SINE Alu 1 281 -31 189 0 0 0 chr6 46059506 46059527 -143220027 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3564 137 3 64 chr6 46059527 46059985 -143219569 - Tigger1 DNA MER2_type -221 2197 1789 1898 123 0 96 chr6 46059987 46060319 -143219235 - AluSx SINE Alu -12 300 1 4763 121 20 69 chr6 46060319 46061065 -143218489 - Tigger1 DNA MER2_type -1538 880 184 2446 94 0 0 chr6 46061065 46061374 -143218180 + AluSg SINE Alu 2 310 0 4763 121 20 69 chr6 46061374 46061526 -143218028 - Tigger1 DNA MER2_type -2234 184 26 195 233 81 70 chr6 46062291 46062377 -143217177 + MIR SINE MIR 126 212 -50 2252 116 0 0 chr6 46062646 46062940 -143216614 + AluSg SINE Alu 1 294 -16 21 36 0 0 chr6 46063260 46063288 -143216266 + AT_rich Low_complexity Low_complexity 1 28 0 182 228 35 18 chr6 46063449 46063506 -143216048 + MIR SINE MIR 203 260 -2 488 246 41 41 chr6 46063508 46063630 -143215924 + L2 LINE L2 3146 3267 -5 841 186 0 0 chr6 46064179 46064319 -143215235 + FLAM_C SINE Alu 1 140 -3 572 249 70 108 chr6 46064333 46064556 -143214998 + MARNA DNA Mariner 167 397 -189 2059 146 3 0 chr6 46064556 46064857 -143214697 + AluSx SINE Alu 1 302 -10 572 249 70 108 chr6 46064857 46064947 -143214607 + MARNA DNA Mariner 397 463 -123 2185 108 3 0 chr6 46064947 46065242 -143214312 + AluSx SINE Alu 1 296 -16 572 249 70 108 chr6 46065242 46065344 -143214210 + MARNA DNA Mariner 463 567 -19 2429 70 0 0 chr6 46065556 46065855 -143213699 - AluY SINE Alu -12 299 1 217 155 36 24 chr6 46066296 46066380 -143213174 + (TA)n Simple_repeat Simple_repeat 1 85 0 189 0 0 0 chr6 46067448 46067469 -143212085 + (A)n Simple_repeat Simple_repeat 1 21 0 2444 43 7 0 chr6 46068899 46069202 -143210352 + AluSp SINE Alu 1 305 0 2329 87 0 10 chr6 46069331 46069640 -143209914 + AluSc SINE Alu 1 306 -3 245 313 68 51 chr6 46069668 46069844 -143209710 - MER5A DNA MER1_type -9 180 2 255 296 148 0 chr6 46070278 46070366 -143209188 + L2 LINE L2 3209 3309 -4 269 310 129 0 chr6 46070786 46070902 -143208652 - L2 LINE L2 0 3272 3142 378 248 18 28 chr6 46070902 46071011 -143208543 - L2 LINE L2 -3 3310 3203 197 315 90 0 chr6 46071790 46071901 -143207653 + L2 LINE L2 3152 3272 0 2307 98 7 0 chr6 46072692 46072989 -143206565 - AluSx SINE Alu -8 304 6 417 39 0 0 chr6 46073047 46073098 -143206456 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 268 174 167 41 chr6 46073205 46073314 -143206240 + MER5A DNA MER1_type 2 133 -56 * 326 99 113 42 chr6 46073311 46073382 -143206172 - MER5A DNA MER1_type -36 153 78 1024 135 109 42 chr6 46073717 46073910 -143205644 + MER3 DNA MER1_type 4 209 0 2218 108 3 0 chr6 46073994 46074290 -143205264 + AluSx SINE Alu 1 297 -15 912 63 0 0 chr6 46074292 46074403 -143205151 + AluY SINE Alu 1 111 -200 514 97 0 0 chr6 46074403 46074475 -143205079 + Alu SINE Alu 227 298 -14 581 225 25 25 chr6 46074505 46074665 -143204889 + Charlie8 DNA MER1_type 66 225 -2192 329 348 61 6 chr6 46075150 46075314 -143204240 + MIR SINE MIR 82 254 -8 1442 145 4 13 chr6 46075627 46075854 -143203700 - AluJb SINE Alu -15 297 73 481 244 138 36 chr6 46075899 46076124 -143203430 - L2 LINE L2 -3 3310 3063 186 103 0 0 chr6 46076289 46076318 -143203236 + MIR SINE MIR 41 69 -139 2111 134 3 0 chr6 46077040 46077332 -143202222 + AluSx SINE Alu 6 298 -14 356 207 35 11 chr6 46077486 46077573 -143201981 - Charlie4 DNA MER1_type 0 1961 1873 4675 164 36 71 chr6 46077573 46078591 -143200963 - L1MB4 LINE L1 0 6180 5128 2162 111 0 10 chr6 46078591 46078908 -143200646 - AluSq SINE Alu 0 313 4 4675 164 36 71 chr6 46078908 46079065 -143200489 - L1MB4 LINE L1 -1052 5128 5079 2041 147 10 0 chr6 46079065 46079371 -143200183 - AluSx SINE Alu -3 309 1 4675 164 36 71 chr6 46079371 46079574 -143199980 - L1MB4 LINE L1 -1101 5079 4870 455 128 64 28 chr6 46079575 46079684 -143199870 - Charlie4 DNA MER1_type -71 1890 1778 1310 171 60 4 chr6 46079684 46079935 -143199619 - Charlie4 DNA MER1_type -1680 281 17 2388 92 0 3 chr6 46079968 46080273 -143199281 + AluSc SINE Alu 1 304 -5 775 277 18 45 chr6 46080819 46080850 -143198704 + MIR SINE MIR 3 33 -229 2354 92 0 16 chr6 46080850 46081154 -143198400 + AluSg SINE Alu 1 299 -11 775 277 18 45 chr6 46081154 46081342 -143198212 + MIR SINE MIR 33 216 -46 2158 98 47 0 chr6 46081365 46081661 -143197893 - AluSg SINE Alu 0 310 1 272 226 139 35 chr6 46082265 46082380 -143197174 + MIR3 SINE MIR 6 132 -76 740 181 176 42 chr6 46082649 46082780 -143196774 - MER20 DNA MER1_type 0 219 52 2198 89 57 0 chr6 46082780 46083061 -143196493 + AluSx SINE Alu 1 297 -15 740 181 176 42 chr6 46083061 46083122 -143196432 - MER20 DNA MER1_type -167 52 1 996 148 15 69 chr6 46083563 46083766 -143195788 + MER20 DNA MER1_type 4 195 -24 1980 157 0 3 chr6 46084356 46084650 -143194904 + AluJb SINE Alu 5 297 -15 2781 207 45 23 chr6 46085384 46085422 -143194132 - L1ME1 LINE L1 -40 6126 6090 2390 105 0 0 chr6 46085422 46085727 -143193827 + AluSx SINE Alu 1 305 -7 2781 207 45 23 chr6 46085727 46086330 -143193224 - L1ME1 LINE L1 -76 6090 5471 * 5056 174 32 19 chr6 46086324 46086875 -143192679 - L1MD1 LINE L1 0 6242 5699 2090 108 7 0 chr6 46086875 46087190 -143192364 - AluSx SINE Alu 0 317 1 5056 174 32 19 chr6 46087190 46087718 -143191836 - L1MD1 LINE L1 -543 5699 5149 878 171 18 6 chr6 46087724 46087894 -143191660 - L1ME1 LINE L1 -869 5490 5319 940 156 6 50 chr6 46087904 46087936 -143191618 - FRAM SINE Alu -140 172 140 261 0 0 0 chr6 46087936 46087965 -143191589 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 940 156 6 50 chr6 46087965 46088112 -143191442 - FRAM SINE Alu -172 140 1 2534 67 0 0 chr6 46088122 46088422 -143191132 - AluY SINE Alu -11 300 1 3666 219 88 11 chr6 46088423 46089457 -143190097 - L1ME1 LINE L1 -1227 4919 3806 277 297 0 0 chr6 46089766 46089830 -143189724 + L2 LINE L2 3204 3267 -5 2043 145 0 0 chr6 46089851 46090133 -143189421 + AluSx SINE Alu 11 292 -20 2759 214 60 23 chr6 46090344 46091091 -143188463 + L1MC4a LINE L1 7029 7803 -5 1767 120 32 52 chr6 46091295 46091603 -143187951 + AluJb SINE Alu 1 302 -10 287 237 104 7 chr6 46091627 46091762 -143187792 + L1ME LINE L1 4113 4260 -1886 1812 182 7 7 chr6 46091890 46092197 -143187357 + AluJb SINE Alu 6 312 0 2631 71 0 0 chr6 46092300 46092611 -143186943 + AluY SINE Alu 1 311 0 1069 234 102 35 chr6 46092811 46093257 -143186297 + L1ME LINE L1 4734 5149 -1021 2070 134 10 0 chr6 46093257 46093549 -143186005 + AluSx SINE Alu 1 295 -17 1069 234 102 35 chr6 46093549 46093967 -143185587 + L1ME LINE L1 5149 5739 -431 400 174 0 0 chr6 46094087 46094156 -143185398 + MLT1K LTR MaLR 511 579 -9 430 174 65 11 chr6 46094164 46094256 -143185298 + L1MC5 LINE L1 7478 7574 -387 863 201 225 99 chr6 46094330 46094477 -143185077 - MLT1F1 LTR MaLR -122 445 318 850 239 17 6 chr6 46094477 46094653 -143184901 - MER45A DNA AcHobo 0 178 1 863 201 225 99 chr6 46094653 46094833 -143184721 - MLT1F1 LTR MaLR -249 318 162 2572 60 0 0 chr6 46094833 46095133 -143184421 + AluY SINE Alu 1 300 -11 863 201 225 99 chr6 46095133 46095177 -143184377 - MLT1F1 LTR MaLR -405 162 1 679 186 124 31 chr6 46095222 46095448 -143184106 + L1MC5 LINE L1 7670 7916 -45 2341 103 6 3 chr6 46097067 46097378 -143182176 + AluSq SINE Alu 1 312 -1 2351 104 3 0 chr6 46097677 46097985 -143181569 - AluSp SINE Alu -2 311 3 1941 136 3 72 chr6 46098801 46099162 -143180392 - MER1B DNA MER1_type 0 337 2 2227 121 0 0 chr6 46099210 46099508 -143180046 - AluSq SINE Alu -15 298 1 1105 134 0 0 chr6 46099547 46099696 -143179858 + AluJb SINE Alu 134 282 -30 189 74 0 0 chr6 46099699 46099726 -143179828 + (TAA)n Simple_repeat Simple_repeat 2 28 0 597 284 48 24 chr6 46100036 46100244 -143179310 + MIR SINE MIR 37 249 -13 1043 141 0 41 chr6 46100450 46100620 -143178934 + AluJo SINE Alu 1 163 -149 457 266 70 8 chr6 46100623 46100751 -143178803 - MIR SINE MIR -106 156 21 425 266 46 0 chr6 46100913 46101022 -143178532 + MER117 DNA MER1_type 2 115 -82 500 236 115 44 chr6 46101147 46101329 -143178225 - MIR SINE MIR -48 214 20 2265 110 0 3 chr6 46101384 46101683 -143177871 + AluSx SINE Alu 1 298 -14 219 244 35 70 chr6 46102042 46102128 -143177426 + MIR SINE MIR 110 192 -70 4709 130 28 23 chr6 46102299 46103045 -143176509 + LTR39 LTR ERV1 24 773 -10 308 241 6 108 chr6 46103341 46103499 -143176055 + L1MC4a LINE L1 5801 5942 -1866 189 147 0 0 chr6 46103687 46103721 -143175833 + (GGA)n Simple_repeat Simple_repeat 3 36 0 427 234 80 64 chr6 46103742 46103930 -143175624 + MIR SINE MIR 24 214 -48 218 328 104 0 chr6 46104772 46104897 -143174657 - MIR SINE MIR -70 192 55 279 0 0 0 chr6 46104932 46104963 -143174591 + (TG)n Simple_repeat Simple_repeat 2 32 0 1730 135 30 4 chr6 46105115 46105531 -143174023 + AluJo SINE Alu 39 461 0 507 287 48 24 chr6 46105832 46106041 -143173513 + L1MC4a LINE L1 5682 5895 -1913 * 692 274 40 94 chr6 46106040 46106374 -143173180 + L1ME4a LINE L1 5410 5708 -462 1854 135 3 61 chr6 46106374 46106685 -143172869 + AluJb SINE Alu 1 293 -19 692 274 40 94 chr6 46106685 46106871 -143172683 + L1ME4a LINE L1 5708 5902 -268 202 206 65 19 chr6 46106894 46107001 -143172553 + (TTATA)n Simple_repeat Simple_repeat 1 112 0 25 0 0 0 chr6 46107222 46107247 -143172307 + AT_rich Low_complexity Low_complexity 1 25 0 194 128 26 0 chr6 46107447 46107486 -143172068 + GA-rich Low_complexity Low_complexity 5 44 0 1991 139 0 25 chr6 46108266 46108583 -143170971 + AluJb SINE Alu 1 309 -3 2511 228 42 45 chr6 46109005 46109051 -143170503 + L1ME3 LINE L1 5481 5526 -636 2315 101 141 5 chr6 46109051 46109428 -143170126 + MSTA LTR MaLR 1 428 0 2511 228 42 45 chr6 46109428 46110065 -143169489 + L1ME3 LINE L1 5526 6162 0 248 206 93 62 chr6 46110582 46110679 -143168875 + L1ME4a LINE L1 5950 6049 -72 234 0 0 0 chr6 46111168 46111194 -143168360 + (CA)n Simple_repeat Simple_repeat 2 27 0 4053 155 37 38 chr6 46111274 46112060 -143167494 - LTR1 LTR ERV1 0 785 1 184 347 62 14 chr6 46112980 46113124 -143166430 + L2 LINE L2 2233 2383 -931 276 295 116 39 chr6 46114204 46114333 -143165221 + MIR3 SINE MIR 49 187 -21 1802 116 98 0 chr6 46114653 46114930 -143164624 + AluJo SINE Alu 1 304 -8 277 256 33 44 chr6 46117806 46117876 -143161678 - MER5B DNA MER1_type -76 102 34 402 307 185 0 chr6 46117876 46118081 -143161473 + MIR SINE MIR 3 245 -17 674 253 151 35 chr6 46118213 46118616 -143160938 + LTR16A LTR ERVL 1 450 0 212 300 20 70 chr6 46119451 46119551 -143160003 + L2 LINE L2 3158 3252 -20 205 343 15 0 chr6 46120169 46120236 -143159318 - L3 LINE CR1 -1193 384 317 225 65 0 0 chr6 46120576 46120607 -143158947 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 252 261 0 0 chr6 46120697 46120762 -143158792 + L1ME4a LINE L1 5959 6023 -98 576 249 40 45 chr6 46121242 46121419 -143158135 - MER5B DNA MER1_type -2 176 1 1025 263 94 12 chr6 46121542 46121946 -143157608 + L1ME4a LINE L1 5531 5919 -202 329 259 193 52 chr6 46121989 46122124 -143157430 + MIR SINE MIR 13 166 -96 1884 147 61 18 chr6 46122733 46123060 -143156494 - MER58B DNA MER1_type 0 341 1 838 158 0 0 chr6 46123618 46123751 -143155803 - FLAM_C SINE Alu -4 139 7 583 280 85 59 chr6 46123751 46124280 -143155274 + L1ME4a LINE L1 5392 5934 -187 712 302 137 22 chr6 46124871 46125192 -143154362 + L1MC4a LINE L1 5556 5913 -1895 226 216 0 0 chr6 46126099 46126150 -143153404 + L1ME4a LINE L1 6069 6119 -2 2224 106 0 0 chr6 46126252 46126555 -143152999 + AluSc SINE Alu 1 303 -6 198 170 19 94 chr6 46126675 46126728 -143152826 + MER5B DNA MER1_type 110 158 -20 541 242 263 10 chr6 46127302 46127500 -143152054 + MIR SINE MIR 1 248 -14 325 185 46 46 chr6 46127827 46127892 -143151662 + L2 LINE L2 3247 3311 -2 188 313 30 30 chr6 46127970 46128037 -143151517 + L3b LINE CR1 1514 1580 -3 2198 91 7 0 chr6 46129078 46129375 -143150179 + AluSx SINE Alu 1 299 -13 1532 177 17 13 chr6 46130781 46131080 -143148474 - AluJb SINE Alu -12 300 1 213 287 87 35 chr6 46131223 46131338 -143148216 + MIR SINE MIR 19 139 -123 510 285 98 21 chr6 46131595 46131788 -143147766 - MIR SINE MIR -44 218 11 234 137 39 59 chr6 46132303 46132354 -143147200 - L1M3de LINE L1 -6596 57 8 2081 95 27 0 chr6 46132431 46132726 -143146828 + AluSx SINE Alu 5 307 -5 1117 252 182 14 chr6 46132746 46133170 -143146384 + L2 LINE L2 2818 3312 -1 1732 155 0 30 chr6 46134118 46134421 -143145133 - AluJo SINE Alu -14 298 5 580 278 53 6 chr6 46134452 46134621 -143144933 + MER5B DNA MER1_type 2 178 0 227 246 53 79 chr6 46134820 46134862 -143144692 + MER5B DNA MER1_type 1 43 -135 2706 10 0 0 chr6 46134862 46135165 -143144389 - AluYb8 SINE Alu -15 303 1 227 246 53 79 chr6 46135165 46135236 -143144318 + MER5B DNA MER1_type 43 111 -67 198 0 0 0 chr6 46135242 46135264 -143144290 + (T)n Simple_repeat Simple_repeat 1 22 0 473 212 124 88 chr6 46138308 46138558 -143140996 - MIR SINE MIR -1 261 3 323 198 62 0 chr6 46138558 46138639 -143140915 - MIR SINE MIR -51 211 126 247 269 46 83 chr6 46138694 46138802 -143140752 - MIR SINE MIR -75 133 30 741 169 22 0 chr6 46139346 46139482 -143140072 - BC200 scRNA scRNA -60 140 2 1238 215 4 23 chr6 46139646 46139911 -143139643 - MIR SINE MIR 0 262 3 316 317 17 25 chr6 46140039 46140159 -143139395 + MER5B DNA MER1_type 1 119 -59 539 170 20 10 chr6 46142604 46142704 -143136850 + MER91B DNA MER1_type 61 161 -29 310 236 29 114 chr6 46143893 46144033 -143135521 - MIR SINE MIR -86 176 49 945 225 80 8 chr6 46144444 46144679 -143134875 - MIR SINE MIR -3 259 12 301 231 0 15 chr6 46145070 46145135 -143134419 + L2 LINE L2 3249 3312 -1 299 222 0 139 chr6 46145145 46145253 -143134301 + MIR3 SINE MIR 103 195 -13 551 234 44 75 chr6 46145584 46145810 -143133744 + MER20 DNA MER1_type 1 219 0 198 171 0 0 chr6 46146219 46146260 -143133294 + CT-rich Low_complexity Low_complexity 2 42 0 1505 232 8 49 chr6 46147626 46148014 -143131540 + L2 LINE L2 2941 3312 -1 2161 100 72 16 chr6 46148420 46148739 -143130815 - MER1B DNA MER1_type 0 337 1 308 217 212 35 chr6 46149226 46149369 -143130185 - MIR SINE MIR -74 188 22 333 259 181 0 chr6 46149405 46149521 -143130033 + MIR SINE MIR 15 151 -111 208 191 0 73 chr6 46150822 46150890 -143128664 + C-rich Low_complexity Low_complexity 5 67 0 36 40 0 0 chr6 46151002 46151052 -143128502 + GC_rich Low_complexity Low_complexity 1 50 0 25 95 0 0 chr6 46151255 46151329 -143128225 + GC_rich Low_complexity Low_complexity 1 74 0 23 0 0 0 chr6 46151828 46151851 -143127703 + AT_rich Low_complexity Low_complexity 1 23 0 2743 10 0 0 chr6 46153756 46154062 -143125492 - AluYa5 SINE Alu -5 306 1 370 310 63 13 chr6 46154724 46154882 -143124672 - MLT1K LTR MaLR -15 573 408 237 214 257 0 chr6 46154881 46154951 -143124603 - MLT1K LTR MaLR -370 218 131 * 256 286 26 58 chr6 46155650 46155804 -143123750 - L2 LINE L2 -190 3082 2934 741 208 34 10 chr6 46155814 46156021 -143123533 - LTR54 LTR ERV1 0 510 299 439 164 47 94 chr6 46156055 46156183 -143123371 - LTR54 LTR ERV1 -327 183 62 196 286 16 32 chr6 46156763 46156826 -143122728 + MER5A DNA MER1_type 128 189 0 786 222 59 29 chr6 46156937 46157176 -143122378 + L1ME2 LINE L1 5911 6156 -8 547 288 56 37 chr6 46157183 46157398 -143122156 + L1MEc LINE L1 2038 2256 -4140 276 230 72 93 chr6 46157462 46157601 -143121953 + HAL1 LINE L1 8 143 -2364 348 311 14 47 chr6 46157604 46157752 -143121802 + HAL1 LINE L1 445 587 -1920 1528 192 24 0 chr6 46157994 46158285 -143121269 - AluJb SINE Alu -14 298 1 425 338 153 0 chr6 46158297 46158454 -143121100 + MER5A DNA MER1_type 9 189 0 1300 219 168 82 chr6 46158607 46158811 -143120743 + HAL1 LINE L1 775 960 -1547 718 174 8 38 chr6 46158811 46158943 -143120611 + AluJo/FLAM SINE Alu 1 128 -174 1980 129 0 3 chr6 46158945 46159247 -143120307 + AluSx SINE Alu 2 302 -10 1665 166 14 3 chr6 46159253 46159543 -143120011 + AluJo SINE Alu 1 293 -19 1300 219 168 82 chr6 46159543 46160235 -143119319 + HAL1 LINE L1 964 1759 -748 1912 120 99 12 chr6 46160235 46160569 -143118985 + MSTA LTR MaLR 2 364 -64 25 0 0 0 chr6 46160576 46160601 -143118953 + AT_rich Low_complexity Low_complexity 1 25 0 483 32 123 0 chr6 46160603 46160829 -143118725 + (TA)n Simple_repeat Simple_repeat 1 253 0 365 123 0 0 chr6 46160829 46160886 -143118668 + MSTA LTR MaLR 372 428 0 587 299 91 11 chr6 46160886 46161160 -143118394 + HAL1 LINE L1 1768 2063 -444 2532 97 27 16 chr6 46161167 46161538 -143118016 - THE1C LTR MaLR 0 375 1 1057 186 22 22 chr6 46161561 46161787 -143117767 + AluJo SINE Alu 5 230 -82 394 169 26 26 chr6 46161828 46161905 -143117649 + MER68 LTR ERV1 68 144 -418 * 1239 162 30 0 chr6 46161893 46162091 -143117463 + MER68 LTR ERV1 359 562 0 1299 192 29 25 chr6 46162126 46162441 -143117113 + AluJo SINE Alu 1 316 0 2050 117 17 0 chr6 46162526 46162817 -143116737 + AluSx SINE Alu 1 296 -16 252 244 153 29 chr6 46162971 46163156 -143116398 - L1M4 LINE L1 -1774 5332 5117 736 73 0 27 chr6 46163156 46163266 -143116288 - L1MA9 LINE L1 0 6312 6206 252 244 153 29 chr6 46163266 46163289 -143116265 - L1M4 LINE L1 -1989 5117 5098 * 1315 116 21 47 chr6 46163268 46163310 -143116244 - L1MA7 LINE L1 -396 6855 6813 2369 186 21 60 chr6 46163310 46163825 -143115729 - LTR42 LTR ERVL 0 495 1 1315 116 21 47 chr6 46163825 46163856 -143115698 - L1MA7 LINE L1 -438 6813 6783 1168 174 155 26 chr6 46163856 46164121 -143115433 - AluJo SINE Alu -1 301 3 1315 116 21 47 chr6 46164121 46164279 -143115275 - L1MA7 LINE L1 -468 6783 6629 2861 205 22 21 chr6 46164280 46165469 -143114085 - L1M4 LINE L1 -4221 2886 1692 381 93 0 0 chr6 46165483 46165537 -143114017 + (TC)n Simple_repeat Simple_repeat 1 54 0 269 283 11 0 chr6 46165510 46165602 -143113952 - L1M4 LINE L1 -1977 4667 4575 * 1748 137 0 4 chr6 46165616 46165871 -143113683 - AluJo SINE Alu -19 293 40 651 236 81 111 chr6 46165895 46166075 -143113479 - L1M4 LINE L1 -2077 4567 4383 4689 167 20 59 chr6 46166075 46166973 -143112581 + MER21B LTR ERV1 1 863 0 651 236 81 111 chr6 46166973 46167335 -143112219 - L1M4 LINE L1 -2261 4383 4041 1248 181 26 125 chr6 46167336 46167785 -143111769 - MLT1A1 LTR MaLR 0 415 4 386 287 43 70 chr6 46167938 46168110 -143111444 - L1M4 LINE L1 -2829 3815 3640 629 267 0 0 chr6 46168110 46168241 -143111313 - FLAM_A SINE Alu -2 131 1 386 287 43 70 chr6 46168241 46168538 -143111016 - L1M4 LINE L1 -3004 3640 3359 787 101 7 67 chr6 46168540 46168689 -143110865 - L1MD1 LINE L1 -19 6223 6084 6547 215 36 50 chr6 46168689 46169954 -143109600 - L1M4 LINE L1 -4833 1709 427 2132 123 0 3 chr6 46169954 46170247 -143109307 + AluSx SINE Alu 1 292 -20 6547 215 36 50 chr6 46170247 46170656 -143108898 - L1M4 LINE L1 -6115 427 151 306 0 0 0 chr6 46170656 46170690 -143108864 + (TG)n Simple_repeat Simple_repeat 1 34 0 6547 215 36 50 chr6 46170690 46170825 -143108729 - L1M4 LINE L1 -6391 151 16 3685 203 42 20 chr6 46170843 46172339 -143107215 - L1MD1 LINE L1 -145 6491 4910 475 122 22 11 chr6 46172343 46172433 -143107121 + CT-rich Low_complexity Low_complexity 2 92 0 2247 109 0 0 chr6 46172433 46172736 -143106818 - AluSx SINE Alu -1 311 9 394 239 101 0 chr6 46172754 46172913 -143106641 - L1MD1 LINE L1 -3321 3219 3045 1327 161 5 5 chr6 46172946 46173164 -143106390 + AluSg/x SINE Alu 83 300 -10 554 293 42 0 chr6 46173231 46173537 -143106017 - L1MD1 LINE L1 -3734 2806 2489 414 100 0 0 chr6 46173617 46173677 -143105877 + (TCCC)n Simple_repeat Simple_repeat 1 60 0 1907 112 58 0 chr6 46173905 46174182 -143105372 + AluSx SINE Alu 1 293 -19 258 338 37 23 chr6 46174301 46174470 -143105084 - ERVL LTR ERVL -264 5390 5217 515 156 0 0 chr6 46174614 46174691 -143104863 + AluJb SINE Alu 210 286 -26 761 290 38 54 chr6 46174833 46175205 -143104349 - ERVL LTR ERVL -806 4958 4593 515 314 37 13 chr6 46175216 46175565 -143103989 - ERVL LTR ERVL -2207 3557 3177 254 275 96 44 chr6 46176319 46176570 -143102984 + HAL1 LINE L1 827 1090 -1417 724 152 33 7 chr6 46176595 46176746 -143102808 - L1MA10 LINE L1 0 6334 6180 2218 178 23 20 chr6 46176813 46177256 -143102298 - L1ME1 LINE L1 -247 5919 5476 1658 156 32 25 chr6 46177265 46177548 -143102006 - AluJo SINE Alu -25 287 3 1573 155 55 53 chr6 46177569 46177930 -143101624 - L1MB7 LINE L1 -10 6174 5813 1078 193 37 102 chr6 46177927 46178301 -143101253 - L1MD1 LINE L1 -8 6234 5885 * 1716 176 0 33 chr6 46178942 46179249 -143100305 + AluJo SINE Alu 1 297 -15 223 305 30 73 chr6 46179805 46180038 -143099516 + L2 LINE L2 2842 3064 -208 6296 140 7 5 chr6 46180556 46182062 -143097492 - L1PB1 LINE L1 -2 6149 4640 1399 142 0 5 chr6 46182097 46182301 -143097253 - AluJo SINE Alu -4 308 106 1898 125 7 36 chr6 46282388 46282692 -142996862 + AluSx SINE Alu 3 297 -15 2360 95 0 0 chr6 46282692 46282986 -142996568 + AluSx SINE Alu 1 294 -18 603 169 223 0 chr6 46282986 46283116 -142996438 - MER58A DNA MER1_type -27 197 39 1898 243 110 17 chr6 46283185 46283524 -142996030 + L1M4 LINE L1 2669 2975 -3171 2341 89 16 0 chr6 46283524 46283828 -142995726 + AluSp SINE Alu 1 309 -4 1898 243 110 17 chr6 46283828 46283998 -142995556 + L1M4 LINE L1 2975 3128 -3018 195 42 0 0 chr6 46283998 46284022 -142995532 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2270 103 0 13 chr6 46284022 46284334 -142995220 + AluSx SINE Alu 1 308 -4 1898 243 110 17 chr6 46284334 46284374 -142995180 + L1M4 LINE L1 3128 3163 -2983 524 172 35 17 chr6 46284374 46284490 -142995064 + L1MB8 LINE L1 6060 6177 -1 2204 114 17 0 chr6 46284498 46284797 -142994757 + AluSg SINE Alu 1 304 -6 1898 243 110 17 chr6 46284797 46285223 -142994331 + L1M4 LINE L1 3169 3876 -2270 2053 145 10 0 chr6 46285223 46285520 -142994034 + AluSx SINE Alu 1 300 -12 1775 187 3 7 chr6 46285544 46285838 -142993716 + AluJo SINE Alu 1 293 -19 1869 159 10 3 chr6 46286147 46286443 -142993111 + 7SLRNA srpRNA srpRNA 23 320 0 2311 117 0 0 chr6 46286828 46287128 -142992426 - AluSx SINE Alu -12 300 1 2676 58 0 0 chr6 46287140 46287451 -142992103 - AluY SINE Alu 0 311 1 1947 126 82 28 chr6 46287482 46287667 -142991887 + MLT1B LTR MaLR 7 180 -210 5867 56 0 141 chr6 46287667 46288629 -142990925 + LTR12 LTR ERV1 1 826 0 1947 126 82 28 chr6 46288629 46288807 -142990747 + MLT1B LTR MaLR 180 390 0 258 156 0 0 chr6 46289293 46289338 -142990216 + (TA)n Simple_repeat Simple_repeat 1 45 0 1753 180 0 0 chr6 46289338 46289621 -142989933 - AluJo SINE Alu -25 287 5 2077 142 0 7 chr6 46289678 46289988 -142989566 - AluSx SINE Alu -4 308 1 677 228 146 14 chr6 46290009 46290228 -142989326 - MIR SINE MIR -2 260 13 353 299 43 0 chr6 46290273 46290390 -142989164 + MIR SINE MIR 29 150 -112 752 155 0 61 chr6 46290680 46290828 -142988726 - FLAM_C SINE Alu -3 140 2 25 0 0 0 chr6 46290972 46290997 -142988557 + AT_rich Low_complexity Low_complexity 1 25 0 2509 66 0 3 chr6 46291006 46291309 -142988245 + AluSq SINE Alu 1 302 -11 2440 86 0 0 chr6 46292051 46292354 -142987200 - AluSx SINE Alu -9 303 1 27 29 0 0 chr6 46294325 46294359 -142985195 + GC_rich Low_complexity Low_complexity 1 34 0 1738 94 0 21 chr6 46295005 46295238 -142984316 + AluSq SINE Alu 1 228 -85 364 251 46 73 chr6 46295776 46295983 -142983571 - MLT1J2 LTR MaLR -197 212 13 809 157 14 7 chr6 46296203 46296343 -142983211 - BC200 scRNA scRNA -53 147 7 1987 94 36 59 chr6 46296738 46297045 -142982509 - AluY SINE Alu -11 300 1 24 0 0 0 chr6 46297061 46297085 -142982469 + AT_rich Low_complexity Low_complexity 1 24 0 1445 156 13 0 chr6 46297220 46297444 -142982110 - AluJo SINE Alu -14 298 72 2103 112 0 3 chr6 46297717 46298004 -142981550 - AluSx SINE Alu -26 286 1 2148 70 22 4 chr6 46298054 46298325 -142981229 + AluSx SINE Alu 19 294 -18 2452 67 3 0 chr6 46298613 46298913 -142980641 + AluY SINE Alu 2 302 -9 2438 70 17 0 chr6 46299214 46299513 -142980041 + AluSx SINE Alu 1 304 -8 2478 63 0 10 chr6 46299518 46299819 -142979735 + AluY SINE Alu 1 298 -13 812 258 40 57 chr6 46299825 46300020 -142979534 - MER20B DNA MER1_type -488 295 105 2367 103 0 3 chr6 46300020 46300330 -142979224 - AluSx SINE Alu -3 309 1 812 258 40 57 chr6 46300330 46300433 -142979121 - MER20B DNA MER1_type -678 105 2 298 246 14 0 chr6 46300458 46300527 -142979027 + L2 LINE L2 3229 3298 -15 464 287 156 82 chr6 46300559 46301207 -142978347 + L2 LINE L2 2199 2894 -420 28 0 0 0 chr6 46301227 46301255 -142978299 + AT_rich Low_complexity Low_complexity 1 28 0 1051 222 164 29 chr6 46301332 46301747 -142977807 - HAL1 LINE L1 -744 1763 1293 1767 145 22 35 chr6 46301747 46302058 -142977496 - AluJo SINE Alu -5 307 1 576 155 198 9 chr6 46302059 46302175 -142977379 - AluJo SINE Alu -173 139 2 413 187 108 101 chr6 46302180 46302319 -142977235 - HAL1 LINE L1 -1215 1292 1153 21 0 0 0 chr6 46302880 46302901 -142976653 + AT_rich Low_complexity Low_complexity 1 21 0 263 190 112 51 chr6 46302915 46303045 -142976509 - L1MC5 LINE L1 0 8042 7832 * 266 244 130 17 chr6 46303022 46303137 -142976417 - HAL1 LINE L1 -1098 1409 1282 619 139 30 0 chr6 46303138 46303239 -142976315 - FRAM SINE Alu 0 176 73 320 253 90 30 chr6 46303265 46303431 -142976123 - L1MC4 LINE L1 -2 8040 7865 2182 102 10 22 chr6 46303483 46303796 -142975758 - AluY SINE Alu -2 309 1 592 277 65 50 chr6 46303942 46304339 -142975215 - HAL1 LINE L1 -1357 1150 748 351 302 30 90 chr6 46304472 46304873 -142974681 - HAL1 LINE L1 -1972 535 159 348 361 11 31 chr6 46305012 46305203 -142974351 + L2 LINE L2 2896 3082 -190 2090 119 3 0 chr6 46305258 46305543 -142974011 - AluSx SINE Alu -24 288 3 1822 171 3 0 chr6 46305563 46305849 -142973705 - AluJb SINE Alu -25 287 1 460 298 9 0 chr6 46305886 46306000 -142973554 + L2 LINE L2 3136 3250 -22 2148 88 0 76 chr6 46306218 46306548 -142973006 + AluSx SINE Alu 1 305 -7 2325 183 112 0 chr6 46306589 46307043 -142972511 - MLT1D LTR MaLR 0 505 1 1962 139 0 26 chr6 46307114 46307417 -142972137 - AluSx SINE Alu -17 295 1 2340 109 3 0 chr6 46307530 46307842 -142971712 + AluSq SINE Alu 1 313 0 1813 151 7 24 chr6 46308048 46308339 -142971215 - AluJb SINE Alu -15 297 12 396 100 0 14 chr6 46308379 46308588 -142970966 + AluSx SINE Alu 1 294 -7 1852 91 4 0 chr6 46308929 46309170 -142970384 - AluY SINE Alu -69 242 1 1755 138 12 43 chr6 46309509 46309836 -142969718 + MER33 DNA MER1_type 8 324 0 2390 81 24 0 chr6 46310034 46310331 -142969223 + AluSg SINE Alu 1 304 -6 2445 93 3 0 chr6 46310665 46310977 -142968577 + AluSq SINE Alu 1 313 0 216 0 0 0 chr6 46311505 46311529 -142968025 + (TA)n Simple_repeat Simple_repeat 2 25 0 2153 112 0 10 chr6 46311529 46311832 -142967722 - AluSx SINE Alu -12 300 1 22 0 0 0 chr6 46311835 46311857 -142967697 + AT_rich Low_complexity Low_complexity 1 22 0 485 143 0 0 chr6 46312405 46312475 -142967079 - AluS SINE Alu -20 291 222 1096 57 43 7 chr6 46312475 46312616 -142966938 - AluSq/x SINE Alu -167 146 1 2538 46 7 0 chr6 46312671 46312975 -142966579 - AluY SINE Alu -5 306 1 545 177 11 11 chr6 46313067 46313180 -142966374 - L1MB7 LINE L1 0 6166 6054 23 0 0 0 chr6 46313827 46313850 -142965704 + GC_rich Low_complexity Low_complexity 1 23 0 587 278 113 63 chr6 46314688 46315023 -142964531 - L2 LINE L2 -1 3271 2920 183 119 34 17 chr6 46315190 46315249 -142964305 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 680 200 0 0 chr6 46315571 46315686 -142963868 + FLAM_A SINE Alu 6 120 -22 242 279 13 0 chr6 46315766 46315845 -142963709 - L1MD3 LINE L1 -15 7980 7901 1786 155 30 0 chr6 46315851 46316147 -142963407 - AluJo SINE Alu -7 305 1 287 156 0 0 chr6 46316203 46316248 -142963306 - L1MC4 LINE L1 -215 7827 7783 2368 90 0 7 chr6 46316264 46316564 -142962990 - AluSx SINE Alu -14 298 1 23 68 0 0 chr6 46316573 46316617 -142962937 + AT_rich Low_complexity Low_complexity 1 44 0 1087 274 67 16 chr6 46316677 46317240 -142962314 - L1MC4a LINE L1 -516 5605 5488 334 313 114 8 chr6 46317661 46317792 -142961762 - L2 LINE L2 -10 3262 3118 197 214 0 0 chr6 46318843 46318885 -142960669 + MIR SINE MIR 204 245 -17 204 40 0 0 chr6 46318889 46318914 -142960640 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 311 217 145 102 chr6 46319020 46319125 -142960429 + MER5B DNA MER1_type 3 119 -59 2375 54 3 0 chr6 46319125 46319419 -142960135 - AluY SINE Alu -16 295 1 311 217 145 102 chr6 46319419 46319479 -142960075 + MER5B DNA MER1_type 119 175 -3 1895 136 0 40 chr6 46319538 46319862 -142959692 - AluJo SINE Alu -1 311 1 2269 63 3 3 chr6 46319984 46320271 -142959283 - AluSq SINE Alu -26 287 1 370 311 36 48 chr6 46320344 46320511 -142959043 - HAL1b LINE L1 -437 911 747 379 261 22 0 chr6 46320702 46320794 -142958760 - MIR SINE MIR -118 144 51 1640 147 35 35 chr6 46320947 46321135 -142958419 - AluJo SINE Alu 0 312 122 216 0 0 0 chr6 46321135 46321159 -142958395 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1640 147 35 35 chr6 46321159 46321282 -142958272 - AluJo SINE Alu -189 123 1 355 372 101 14 chr6 46321308 46321744 -142957810 + L2 LINE L2 1342 1815 -1499 2106 114 0 3 chr6 46321850 46321861 -142957693 - AluSx SINE Alu -14 298 288 201 39 0 0 chr6 46321861 46321887 -142957667 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2106 114 0 3 chr6 46321887 46322174 -142957380 - AluSx SINE Alu -24 288 1 1230 261 119 79 chr6 46322901 46323309 -142956245 - HAL1 LINE L1 -429 2078 1688 1682 180 0 6 chr6 46323309 46323620 -142955934 - AluJo SINE Alu -3 309 1 1230 261 119 79 chr6 46323620 46323895 -142955659 - HAL1 LINE L1 -819 1688 1426 2296 79 3 0 chr6 46323895 46324198 -142955356 - AluY SINE Alu -7 304 1 1230 261 119 79 chr6 46324198 46324567 -142954987 - HAL1 LINE L1 -1081 1426 982 619 143 0 0 chr6 46324575 46324659 -142954895 + AluJ/FLAM SINE Alu 2 85 -227 2249 89 0 0 chr6 46324663 46324955 -142954599 - AluSc SINE Alu -17 292 1 2400 81 0 0 chr6 46324957 46325265 -142954289 - AluSx SINE Alu -4 308 1 1527 167 11 24 chr6 46325378 46325665 -142953889 - AluJb SINE Alu -19 293 11 851 206 87 79 chr6 46325761 46325866 -142953688 - MIR SINE MIR 0 262 159 2282 86 0 7 chr6 46325866 46326168 -142953386 - AluSq SINE Alu -13 300 1 474 213 119 31 chr6 46326172 46326332 -142953222 - MER104 DNA MER2_type -3 177 4 851 206 87 79 chr6 46326332 46326473 -142953081 - MIR SINE MIR -105 157 9 553 158 5 63 chr6 46326690 46326880 -142952674 + CT-rich Low_complexity Low_complexity 2 180 0 2036 92 35 0 chr6 46326881 46327165 -142952389 - AluSp SINE Alu -18 295 2 204 40 0 0 chr6 46327165 46327190 -142952364 + (TC)n Simple_repeat Simple_repeat 1 25 0 596 107 0 0 chr6 46327206 46327290 -142952264 - AluS SINE Alu -225 88 5 850 170 6 16 chr6 46327328 46327510 -142952044 + CT-rich Low_complexity Low_complexity 1 180 0 1738 157 4 4 chr6 46327510 46327791 -142951763 - AluJo SINE Alu -31 281 1 324 257 108 136 chr6 46327980 46328194 -142951360 - HAL1 LINE L1 -2299 208 1 1321 150 29 70 chr6 46328447 46328720 -142950834 - AluJb SINE Alu -19 293 32 1570 136 41 37 chr6 46328778 46329073 -142950481 + AluJb SINE Alu 3 298 -14 2147 103 3 22 chr6 46329073 46329392 -142950162 + AluSq SINE Alu 1 313 0 580 120 50 0 chr6 46329658 46329758 -142949796 + FLAM_C SINE Alu 28 132 -11 2253 101 0 0 chr6 46330508 46330804 -142948750 - AluSg SINE Alu -14 296 1 232 174 0 22 chr6 46331075 46331121 -142948433 - MLT1K LTR MaLR -356 232 188 5834 107 65 102 chr6 46331297 46331738 -142947816 - Tigger3b DNA MER2_type -1798 1230 774 1499 101 14 9 chr6 46331738 46331957 -142947597 + AluSq SINE Alu 82 301 -12 5834 107 65 102 chr6 46331957 46332362 -142947192 - Tigger3b DNA MER2_type -2254 774 444 2084 114 3 0 chr6 46332362 46332659 -142946895 - AluSx SINE Alu -14 298 1 5834 107 65 102 chr6 46332659 46333088 -142946466 - Tigger3b DNA MER2_type -2584 444 1 1686 157 24 3 chr6 46333451 46333738 -142945816 - AluJb SINE Alu -14 298 6 421 263 35 18 chr6 46334015 46334129 -142945425 + MIR SINE MIR 16 131 -131 274 151 0 19 chr6 46334123 46334176 -142945378 - MER5B DNA MER1_type -6 172 121 * 1019 132 7 0 chr6 46334176 46334328 -142945226 + AluSx SINE Alu 1 153 -159 249 139 0 0 chr6 46334369 46334412 -142945142 + (A)n Simple_repeat Simple_repeat 1 43 0 395 258 22 0 chr6 46334413 46334502 -142945052 - MER5B DNA MER1_type -49 129 39 202 230 188 119 chr6 46334627 46334888 -142944666 + L2 LINE L2 2886 3164 -108 199 296 80 23 chr6 46335067 46335155 -142944399 + L2 LINE L2 3210 3302 -11 606 215 0 52 chr6 46335219 46335354 -142944200 + FLAM_C SINE Alu 2 129 -14 249 192 50 0 chr6 46335354 46335474 -142944080 + (TA)n Simple_repeat Simple_repeat 1 126 0 778 120 16 0 chr6 46335513 46335638 -142943916 + Charlie5 DNA MER1_type 1 127 -2485 * 1552 160 67 27 chr6 46335635 46335701 -142943853 + Charlie5 DNA MER1_type 2234 2296 -328 1480 177 71 7 chr6 46335701 46335983 -142943571 - AluJb SINE Alu -12 300 1 1552 160 67 27 chr6 46335983 46336292 -142943262 + Charlie5 DNA MER1_type 2296 2624 0 2116 122 0 3 chr6 46336353 46336648 -142942906 - AluSq SINE Alu -19 294 1 433 317 96 12 chr6 46337071 46337238 -142942316 + MER5A DNA MER1_type 9 189 0 733 249 6 0 chr6 46337247 46337412 -142942142 - MER5B DNA MER1_type -8 170 5 305 261 25 76 chr6 46337868 46337888 -142941666 + L1MCa LINE L1 2263 2282 -4144 2084 111 0 3 chr6 46337888 46338177 -142941377 + AluSx SINE Alu 1 288 -24 305 261 25 76 chr6 46338177 46338275 -142941279 + L1MCa LINE L1 2282 2375 -4051 966 236 137 21 chr6 46338292 46338627 -142940927 - L2 LINE L2 -5 3308 2935 3879 139 46 6 chr6 46338627 46339302 -142940252 - L1MB7 LINE L1 -194 5990 5289 1316 141 4 66 chr6 46339310 46339551 -142940003 - AluJo SINE Alu -20 292 67 1373 183 97 46 chr6 46339562 46339907 -142939647 - L1MB7 LINE L1 -863 5283 4914 731 212 0 0 chr6 46339907 46340039 -142939515 - FLAM_A SINE Alu 0 133 2 1373 183 97 46 chr6 46340039 46340086 -142939468 - L1MB7 LINE L1 -1232 4914 4871 5362 117 32 77 chr6 46340086 46341124 -142938430 - MER52C LTR ERV1 0 1278 1 454 247 0 0 chr6 46341124 46341221 -142938333 - L1MB7 LINE L1 -1272 4874 4778 1764 149 17 10 chr6 46341315 46341617 -142937937 - AluJb SINE Alu -8 304 1 1212 85 40 11 chr6 46341665 46341841 -142937713 + AluJb SINE Alu 129 309 -3 1505 99 59 136 chr6 46342210 46342533 -142937021 + AluJo SINE Alu 1 298 -14 448 217 131 40 chr6 46342709 46342907 -142936647 + LTR33 LTR ERVL 304 519 -2 580 290 90 23 chr6 46342954 46343192 -142936362 - MIR SINE MIR -6 256 5 1322 245 83 39 chr6 46343329 46343595 -142935959 - L2 LINE L2 0 3313 3060 1673 141 32 0 chr6 46343595 46343872 -142935682 - AluSx SINE Alu -16 296 11 1322 245 83 39 chr6 46343872 46344069 -142935485 - L2 LINE L2 -253 3060 2873 2164 76 31 10 chr6 46344069 46344358 -142935196 + AluSp SINE Alu 1 295 -18 1322 245 83 39 chr6 46344358 46344535 -142935019 - L2 LINE L2 -440 2873 2642 23 0 0 0 chr6 46344649 46344672 -142934882 + AT_rich Low_complexity Low_complexity 1 23 0 1710 156 29 0 chr6 46344672 46344948 -142934606 - AluJb SINE Alu -28 284 1 853 171 13 32 chr6 46345069 46345227 -142934327 + AluJo SINE Alu 66 220 -92 25 65 0 0 chr6 46346728 46346774 -142932780 + AT_rich Low_complexity Low_complexity 1 46 0 2338 78 0 0 chr6 46347049 46347345 -142932209 + AluSc SINE Alu 1 296 -13 267 152 0 0 chr6 46347466 46347512 -142932042 + (CATA)n Simple_repeat Simple_repeat 2 47 0 305 214 0 0 chr6 46347516 46347572 -142931982 - L1MC4a LINE L1 -1884 5924 5869 815 224 25 95 chr6 46347581 46347822 -142931732 - MIR SINE MIR -37 225 2 951 173 11 0 chr6 46347893 46348072 -142931482 + AluJo SINE Alu 126 306 -6 922 257 166 47 chr6 46348087 46348418 -142931136 - L1MC4a LINE L1 -2020 5788 5387 1627 151 0 7 chr6 46348418 46348689 -142930865 - AluJb SINE Alu -39 273 5 922 257 166 47 chr6 46348689 46348808 -142930746 - L1MC4a LINE L1 -2421 5387 5284 189 0 0 0 chr6 46349480 46349501 -142930053 + (CCCTG)n Simple_repeat Simple_repeat 5 25 0 2001 131 0 25 chr6 46350969 46351289 -142928265 - AluSx SINE Alu 0 312 1 1443 174 37 37 chr6 46351843 46352141 -142927413 - AluJo SINE Alu -14 298 1 836 145 0 23 chr6 46352153 46352284 -142927270 - FLAM_C SINE Alu -5 128 1 243 139 0 89 chr6 46352287 46352366 -142927188 + L1MA7 LINE L1 6216 6287 -4 2013 110 7 13 chr6 46352428 46352727 -142926827 - AluSg SINE Alu -13 297 1 183 200 0 0 chr6 46352852 46352887 -142926667 + L2 LINE L2 3238 3272 0 289 308 43 8 chr6 46352933 46353050 -142926504 - L3 LINE CR1 -64 1513 1393 266 242 215 2 chr6 46353112 46353280 -142926274 - LTR16C LTR ERVL 0 491 239 271 277 142 26 chr6 46354291 46354446 -142925108 - MIR3 SINE MIR -15 193 21 663 231 125 12 chr6 46354798 46354958 -142924596 - MER5A DNA MER1_type 0 189 12 541 240 113 23 chr6 46354963 46355184 -142924370 - MER112 DNA MER1_type -12 248 8 379 265 223 42 chr6 46355436 46355602 -142923952 - MER91A DNA MER1_type 0 196 1 470 347 33 9 chr6 46355837 46356050 -142923504 - MIR SINE MIR 0 262 45 633 203 8 30 chr6 46356525 46356658 -142922896 - L2 LINE L2 0 3313 3184 184 313 0 0 chr6 46357165 46357213 -142922341 - MIR SINE MIR -28 234 187 278 302 63 56 chr6 46357241 46357367 -142922187 - MIR SINE MIR -21 241 115 2148 119 0 0 chr6 46357436 46357739 -142921815 - AluSg SINE Alu -7 303 1 1509 170 13 31 chr6 46357757 46358075 -142921479 - AluJo SINE Alu 0 312 1 1024 174 70 42 chr6 46358462 46358675 -142920879 + MER20 DNA MER1_type 1 219 0 321 307 75 42 chr6 46358700 46358912 -142920642 - L1M4 LINE L1 -837 5309 5091 243 258 0 62 chr6 46358984 46359081 -142920473 - L1M4 LINE L1 -1134 5012 4922 346 241 35 0 chr6 46359550 46359637 -142919917 + L2 LINE L2 3182 3271 -1 230 292 204 0 chr6 46359710 46359823 -142919731 + MIR3 SINE MIR 35 170 -38 394 104 122 165 chr6 46359823 46359867 -142919687 - ORSL DNA AcHobo -165 110 66 1800 125 24 24 chr6 46359867 46360154 -142919400 - AluJb SINE Alu -23 289 3 394 104 122 165 chr6 46360154 46360224 -142919330 - ORSL DNA AcHobo -209 66 1 290 260 32 81 chr6 46360442 46360538 -142919016 + MIR SINE MIR 60 150 -112 2187 100 0 3 chr6 46360538 46360839 -142918715 - AluSc SINE Alu -9 300 1 290 260 32 81 chr6 46360839 46360865 -142918689 + MIR SINE MIR 150 176 -86 367 224 0 26 chr6 46360878 46360954 -142918600 - L2 LINE L2 -4 3309 3236 365 136 15 30 chr6 46360956 46361022 -142918532 + L2 LINE L2 3247 3311 -2 2198 103 3 0 chr6 46362247 46362547 -142917007 - AluSx SINE Alu -11 301 1 1796 161 3 0 chr6 46362967 46363259 -142916295 - AluJo SINE Alu -19 293 1 488 321 44 0 chr6 46363400 46363559 -142915995 + MER91A DNA MER1_type 1 166 -30 2241 247 148 29 chr6 46364053 46365464 -142914090 + L2 LINE L2 1726 3312 -1 229 279 38 25 chr6 46365450 46365529 -142914025 + MIR3 SINE MIR 12 91 -117 * 1041 186 104 5 chr6 46366306 46366527 -142913027 - MIR SINE MIR -17 245 3 1072 111 53 102 chr6 46366634 46366772 -142912782 - L1PA16 LINE L1 -1 6165 6022 222 37 0 0 chr6 46366772 46366799 -142912755 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1865 92 14 11 chr6 46366799 46367081 -142912473 - AluSq SINE Alu -30 283 1 1072 111 53 102 chr6 46367081 46367166 -142912388 - L1PA16 LINE L1 -142 6024 5952 959 115 0 0 chr6 46367253 46367392 -142912162 + L1MA4A LINE L1 6160 6298 -5 781 118 8 17 chr6 46367415 46367534 -142912020 - FRAM SINE Alu -17 159 42 316 304 204 16 chr6 46367558 46367749 -142911805 - MIR SINE MIR -1 261 35 633 232 77 53 chr6 46369071 46369278 -142910276 - MIR SINE MIR -34 228 17 623 266 62 31 chr6 46369383 46369575 -142909979 - MIR SINE MIR -12 250 53 293 47 23 0 chr6 46369836 46369879 -142909675 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 2187 129 0 0 chr6 46369879 46370174 -142909380 - AluSx SINE Alu -17 295 1 210 105 0 26 chr6 46371021 46371059 -142908495 + MIR SINE MIR 108 144 -118 2170 113 7 7 chr6 46371143 46371445 -142908109 - AluSx SINE Alu -10 302 1 272 247 0 27 chr6 46371446 46371519 -142908035 - MIR SINE MIR -11 251 181 426 240 3 37 chr6 46371782 46371942 -142907612 + MIR SINE MIR 60 213 -49 7392 135 95 72 chr6 46372537 46374197 -142905357 + pTR5 LTR ERV1 741 2438 0 345 242 53 0 chr6 46374236 46374331 -142905223 - MIR3 SINE MIR -28 180 81 243 298 0 0 chr6 46374725 46374782 -142904772 - L2 LINE L2 -9 3263 3207 1959 103 48 38 chr6 46374867 46375020 -142904534 - AluSq SINE Alu -20 293 134 2444 67 0 13 chr6 46375020 46375318 -142904236 - AluY SINE Alu -17 294 1 1959 103 48 38 chr6 46375318 46375454 -142904100 - AluSq SINE Alu -179 134 1 327 145 32 0 chr6 46376776 46376838 -142902716 - L3 LINE CR1 -90 1487 1424 2418 69 14 0 chr6 46377144 46377435 -142902119 + AluSc SINE Alu 1 295 -14 192 286 0 0 chr6 46377468 46377517 -142902037 + MIR SINE MIR 99 147 -61 349 244 321 6 chr6 46377575 46377743 -142901811 - L2 LINE L2 0 3313 3093 2480 102 0 0 chr6 46377853 46378166 -142901388 - AluSp SINE Alu 0 313 1 648 280 127 26 chr6 46379183 46379428 -142900126 - MLT1J1 LTR MaLR 0 446 162 2236 135 0 3 chr6 46379428 46379740 -142899814 - AluSx SINE Alu -1 311 1 648 280 127 26 chr6 46379740 46379801 -142899753 - MLT1J1 LTR MaLR -284 162 109 771 238 142 11 chr6 46379861 46380143 -142899411 + LTR33 LTR ERVL 34 352 -169 442 296 127 14 chr6 46380531 46380751 -142898803 + MLT1K LTR MaLR 20 264 -324 814 157 0 127 chr6 46380985 46381182 -142898372 - FRAM SINE Alu -4 172 1 2119 104 0 66 chr6 46381622 46381939 -142897615 + AluSx SINE Alu 1 296 -16 4475 177 44 27 chr6 46381949 46383329 -142896225 + L1MB7 LINE L1 3847 5201 -983 2234 106 11 50 chr6 46383329 46383708 -142895846 - THE1B LTR MaLR 0 364 1 4475 177 44 27 chr6 46383708 46383773 -142895781 + L1MB7 LINE L1 5201 5263 -921 3434 137 16 0 chr6 46383773 46384321 -142895233 + MER41D LTR ERV1 1 557 0 4475 177 44 27 chr6 46384321 46385000 -142894554 + L1MB7 LINE L1 5263 6130 -54 1857 143 4 4 chr6 46385000 46385273 -142894281 + AluSx SINE Alu 1 273 -39 4475 177 44 27 chr6 46385273 46385329 -142894225 + L1MB7 LINE L1 6130 6184 0 452 324 88 12 chr6 46385425 46385595 -142893959 + MIR SINE MIR 5 187 -75 956 131 0 0 chr6 46387282 46387419 -142892135 + FLAM_C SINE Alu 7 143 0 246 128 0 0 chr6 46387419 46387458 -142892096 + (GA)n Simple_repeat Simple_repeat 1 39 0 577 344 105 10 chr6 46387459 46387860 -142891694 + L1MC4a LINE L1 5411 5849 -1959 1566 130 74 46 chr6 46388610 46388753 -142890801 + AluJb SINE Alu 1 139 -173 2272 92 3 7 chr6 46388753 46389048 -142890506 + AluSc SINE Alu 1 294 -15 1566 130 74 46 chr6 46389048 46389188 -142890366 + AluJb SINE Alu 139 292 -20 1172 242 65 45 chr6 46390108 46390566 -142888988 - MLT1C LTR MaLR 0 467 3 2682 159 6 26 chr6 46390743 46391234 -142888320 - MER66B LTR ERV1 0 486 6 2117 96 26 61 chr6 46391729 46392041 -142887513 - AluSx SINE Alu -11 301 1 402 272 25 54 chr6 46392041 46392222 -142887332 - L1ME LINE L1 -501 5669 5497 1961 118 29 11 chr6 46392254 46392572 -142886982 + AluSg SINE Alu 5 327 0 1625 65 23 0 chr6 46392660 46392877 -142886677 - MLT2A1 LTR ERVL 0 444 223 2182 130 0 3 chr6 46393074 46393374 -142886180 - AluSx SINE Alu -13 299 1 1631 176 20 10 chr6 46393590 46393892 -142885662 + MER58B DNA MER1_type 37 341 0 421 273 45 87 chr6 46393988 46394230 -142885324 - L2 LINE L2 -145 3127 2896 189 0 0 0 chr6 46394376 46394397 -142885157 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 212 320 128 16 chr6 46394397 46394522 -142885032 - L2 LINE L2 -13 3259 3121 357 295 72 30 chr6 46394609 46394946 -142884608 + MLT1L LTR MaLR 168 561 -54 1061 153 77 29 chr6 46394946 46395155 -142884399 + MER20 DNA MER1_type 1 219 0 299 327 39 0 chr6 46395413 46395517 -142884037 - MIR SINE MIR -43 219 112 639 233 0 0 chr6 46395552 46395685 -142883869 - FLAM_A SINE Alu 0 133 1 201 264 102 3 chr6 46395702 46395730 -142883824 + MIR SINE MIR 66 90 -118 2141 108 34 3 chr6 46395730 46396025 -142883529 - AluSx SINE Alu -8 304 1 201 264 102 3 chr6 46396025 46396098 -142883456 + MIR SINE MIR 90 144 -64 1217 243 12 31 chr6 46397003 46397328 -142882226 - L1ME LINE L1 -372 5798 5480 696 223 125 2 chr6 46397339 46397610 -142881944 + L1ME3A LINE L1 5838 6169 -1 630 236 29 6 chr6 46397685 46397859 -142881695 + MER45A DNA AcHobo 1 178 0 589 153 23 30 chr6 46398114 46398245 -142881309 - L1MB3 LINE L1 0 6183 6054 268 137 59 0 chr6 46398335 46398386 -142881168 - L1MB3 LINE L1 -136 6047 5994 181 283 33 0 chr6 46398626 46398686 -142880868 + L2 LINE L2 3210 3271 -1 197 91 30 0 chr6 46398725 46398758 -142880796 - MIR SINE MIR -14 248 215 738 127 6 30 chr6 46398795 46398951 -142880603 + (TTCC)n Simple_repeat Simple_repeat 3 156 -8 2178 152 0 3 chr6 46398951 46399261 -142880293 - AluJo SINE Alu -3 309 1 738 127 6 30 chr6 46399261 46399270 -142880284 + (TTCC)n Simple_repeat Simple_repeat 156 164 0 196 333 171 0 chr6 46399271 46399388 -142880166 - MIR SINE MIR -55 207 71 2536 96 0 0 chr6 46399492 46399804 -142879750 - AluSx SINE Alu 0 312 1 365 269 68 8 chr6 46400869 46400995 -142878559 + MIR SINE MIR 32 166 -62 261 302 47 0 chr6 46401481 46401587 -142877967 + MIR3 SINE MIR 15 125 -83 321 294 47 0 chr6 46403715 46403800 -142875754 + L2 LINE L2 3168 3256 -16 707 272 206 22 chr6 46404789 46405509 -142874045 - L2 LINE L2 0 3313 2468 708 135 0 9 chr6 46405513 46405624 -142873930 + FLAM_C SINE Alu 9 118 -25 22 0 0 0 chr6 46405629 46405651 -142873903 + AT_rich Low_complexity Low_complexity 1 22 0 364 238 12 0 chr6 46405651 46405731 -142873823 - L2 LINE L2 -832 2482 2402 217 326 21 0 chr6 46405778 46405873 -142873681 - MIR SINE MIR -120 142 46 705 247 31 0 chr6 46405873 46406035 -142873519 - MLT1D LTR MaLR 0 505 339 228 299 104 0 chr6 46406035 46406112 -142873442 + MIR SINE MIR 68 152 -110 2345 89 0 0 chr6 46406271 46406613 -142872941 + AluSx SINE Alu 1 342 0 519 174 16 8 chr6 46407374 46407495 -142872059 + CT-rich Low_complexity Low_complexity 4 125 0 2073 121 17 3 chr6 46407508 46407806 -142871748 - AluSx SINE Alu -10 302 1 310 296 17 26 chr6 46407866 46407981 -142871573 + MIR SINE MIR 59 172 -90 287 267 104 52 chr6 46408148 46408283 -142871271 + MIR3 SINE MIR 45 186 -22 23 33 0 0 chr6 46408995 46409025 -142870529 + AT_rich Low_complexity Low_complexity 1 30 0 374 227 191 0 chr6 46409105 46409246 -142870308 - L1MC4 LINE L1 -89 7953 7786 348 236 18 73 chr6 46409832 46409942 -142869612 - MIR SINE MIR -80 182 79 256 211 254 35 chr6 46411129 46411243 -142868311 + MIR3 SINE MIR 7 145 -63 409 328 52 0 chr6 46411302 46411436 -142868118 - MIR SINE MIR -68 194 54 513 239 37 0 chr6 46412347 46412481 -142867073 + MIR SINE MIR 47 185 -77 657 0 0 0 chr6 46412686 46412759 -142866795 + (TA)n Simple_repeat Simple_repeat 2 74 0 2249 122 0 0 chr6 46413319 46413615 -142865939 - AluSx SINE Alu -14 298 3 182 224 0 41 chr6 46414336 46414385 -142865169 - MER5A DNA MER1_type -21 168 122 415 255 38 0 chr6 46414494 46414600 -142864954 - MIR SINE MIR -54 208 99 455 254 97 0 chr6 46415318 46415432 -142864122 + MER63 DNA MER1_type 1 751 -311 1263 95 0 12 chr6 46415451 46415620 -142863934 + AluSg/x SINE Alu 125 291 -19 381 243 99 9 chr6 46416228 46416339 -142863215 + MIR SINE MIR 44 149 -59 952 276 157 11 chr6 46416791 46417161 -142862393 + LTR16C LTR ERVL 58 481 -10 227 222 19 0 chr6 46418094 46418148 -142861406 + L2 LINE L2 3008 3062 -251 1886 141 0 49 chr6 46418603 46418909 -142860645 - AluJb SINE Alu -21 291 1 313 307 102 7 chr6 46419115 46419252 -142860302 + MARNA DNA Mariner 92 241 -345 252 0 0 0 chr6 46419500 46419528 -142860026 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 230 291 29 58 chr6 46420195 46420298 -142859256 + MIR SINE MIR 25 124 -84 182 302 21 62 chr6 46420600 46420696 -142858858 + MIR SINE MIR 138 229 -33 738 239 10 56 chr6 46420765 46420962 -142858592 + MER91B DNA MER1_type 3 190 0 306 230 80 20 chr6 46421750 46421850 -142857704 + MIR SINE MIR 30 135 -73 1762 49 5 13 chr6 46421982 46422206 -142857348 + L1PA3 LINE L1 5934 6155 0 412 273 9 2 chr6 46422351 46422497 -142857057 - MIR SINE MIR -62 146 20 454 232 45 9 chr6 46422522 46422634 -142856920 - L2 LINE L2 -1 3312 3197 852 127 139 0 chr6 46423151 46423317 -142856237 + MER53 DNA DNA 1 189 0 189 225 113 38 chr6 46424203 46424283 -142855271 + MER5B DNA MER1_type 8 93 -85 273 217 54 139 chr6 46425097 46425226 -142854328 + MER91B DNA MER1_type 13 130 -60 408 245 41 10 chr6 46425243 46425341 -142854213 + MER91B DNA MER1_type 90 190 0 294 324 54 9 chr6 46425590 46425701 -142853853 + MIR3 SINE MIR 3 118 -90 228 245 163 106 chr6 46425880 46426125 -142853429 + L2 LINE L2 2832 3090 -182 731 147 59 7 chr6 46426140 46426276 -142853278 - MER5A DNA MER1_type 0 189 47 512 209 0 0 chr6 46426630 46426721 -142852833 + MIR SINE MIR 29 119 -143 294 162 27 108 chr6 46427157 46427268 -142852286 + MLT1I LTR MaLR 308 409 0 633 168 0 0 chr6 46428385 46428486 -142851068 - FLAM_A SINE Alu -41 101 1 272 276 11 35 chr6 46428742 46428829 -142850725 + L2 LINE L2 3228 3312 -1 2239 126 0 0 chr6 46428938 46429240 -142850314 - AluSq SINE Alu -11 302 1 448 319 111 9 chr6 46429289 46429515 -142850039 - MIR SINE MIR -1 261 13 202 211 18 70 chr6 46429845 46429902 -142849652 - MER5B DNA MER1_type -2 176 123 1606 185 50 3 chr6 46431280 46431578 -142847976 + AluSx SINE Alu 1 312 0 1200 108 142 15 chr6 46432032 46432236 -142847318 + MER30 DNA MER1_type 1 230 0 612 223 181 21 chr6 46432314 46432502 -142847052 - MER20 DNA MER1_type 0 219 2 2021 114 0 4 chr6 46432683 46432955 -142846599 - AluSx SINE Alu -5 307 37 194 329 68 58 chr6 46433364 46433497 -142846057 + L2 LINE L2 3014 3151 -162 2125 135 0 0 chr6 46433497 46433785 -142845769 - AluSq SINE Alu -25 288 1 194 329 68 58 chr6 46433785 46433858 -142845696 + L2 LINE L2 3151 3222 -91 619 208 249 42 chr6 46433890 46433942 -142845612 - MER5C DNA MER1_type -2 322 282 2396 79 3 0 chr6 46433942 46434232 -142845322 + AluY SINE Alu 1 291 -20 619 208 249 42 chr6 46434232 46434444 -142845110 - MER5C DNA MER1_type -42 282 3 918 185 33 5 chr6 46434483 46434667 -142844887 - MER5A DNA MER1_type 0 189 1 307 273 162 56 chr6 46435605 46436082 -142843472 - L2 LINE L2 -68 3204 2683 645 204 0 0 chr6 46436098 46436201 -142843353 + AluJb SINE Alu 185 287 -25 2766 151 105 129 chr6 46436298 46436502 -142843052 + L1MC3 LINE L1 6895 7102 -683 266 299 0 0 chr6 46436502 46436569 -142842985 + MLT1F1 LTR MaLR 45 111 -456 2766 151 105 129 chr6 46436569 46436863 -142842691 + L1MC3 LINE L1 7102 7402 -383 2112 72 0 0 chr6 46436863 46437113 -142842441 + AluY SINE Alu 23 272 -39 354 23 0 0 chr6 46437113 46437156 -142842398 + (TC)n Simple_repeat Simple_repeat 1 43 0 2766 151 105 129 chr6 46437156 46437494 -142842060 + L1MC3 LINE L1 7400 7777 -8 3129 187 92 41 chr6 46437505 46437701 -142841853 + L1MB2 LINE L1 5316 5500 -671 2642 65 0 0 chr6 46437701 46438011 -142841543 + AluY SINE Alu 1 310 -1 3129 187 92 41 chr6 46438011 46438298 -142841256 + L1MB2 LINE L1 5500 5771 -400 2281 98 0 3 chr6 46438298 46438593 -142840961 + AluSc SINE Alu 1 294 -15 3129 187 92 41 chr6 46438593 46438919 -142840635 + L1MB2 LINE L1 5771 6168 -3 1726 171 55 102 chr6 46438934 46439442 -142840112 + L1ME1 LINE L1 5595 6078 -88 216 0 0 0 chr6 46439445 46439469 -142840085 + (TG)n Simple_repeat Simple_repeat 2 25 0 580 247 126 11 chr6 46440308 46440482 -142839072 - MIR SINE MIR -19 243 50 407 205 66 114 chr6 46440472 46440638 -142838916 - MIR3 SINE MIR -48 160 3 * 297 318 106 6 chr6 46440798 46440977 -142838577 + L1ME4a LINE L1 5684 5880 -241 1405 190 137 4 chr6 46441043 46441306 -142838248 - AluJb SINE Alu -4 298 1 467 232 179 13 chr6 46442271 46442422 -142837132 + MIR SINE MIR 20 195 -67 1155 161 0 33 chr6 46442431 46442642 -142836912 - MER58C DNA MER1_type -11 204 1 339 340 10 0 chr6 46442704 46442807 -142836747 - MIR SINE MIR -112 150 47 180 276 0 69 chr6 46443635 46443693 -142835861 + MIR3 SINE MIR 111 164 -44 389 291 155 0 chr6 46443697 46443845 -142835709 + MER5A DNA MER1_type 9 179 -10 244 340 68 12 chr6 46444399 46444561 -142834993 + MIR3 SINE MIR 32 202 -6 185 343 130 20 chr6 46446122 46446268 -142833286 - MIR3 SINE MIR -8 200 39 698 251 26 36 chr6 46446766 46446961 -142832593 - MIR SINE MIR -63 199 7 568 260 87 25 chr6 46447127 46447323 -142832231 + L3 LINE CR1 1367 1574 -3 341 252 3 0 chr6 46447376 46447459 -142832095 - MIR SINE MIR -68 140 57 346 247 0 0 chr6 46447541 46447614 -142831940 - MIR SINE MIR -119 143 71 559 34 47 113 chr6 46448277 46448398 -142831156 - L1ME4a LINE L1 -216 5905 5778 1551 181 34 34 chr6 46448398 46448577 -142830977 - AluJo SINE Alu -20 292 111 2828 13 0 19 chr6 46448577 46448891 -142830663 + AluYb8 SINE Alu 1 308 -10 1551 181 34 34 chr6 46448891 46449003 -142830551 - AluJo SINE Alu -200 112 1 559 34 47 113 chr6 46449003 46449230 -142830324 - L1ME4a LINE L1 -343 5778 5593 360 0 0 0 chr6 46449539 46449579 -142829975 + (TG)n Simple_repeat Simple_repeat 2 41 0 212 158 18 0 chr6 46449607 46449664 -142829890 + CT-rich Low_complexity Low_complexity 1 58 0 1916 146 0 32 chr6 46450350 46450658 -142828896 + AluJo SINE Alu 2 299 -13 288 71 0 0 chr6 46450755 46450797 -142828757 - FLAM SINE Alu -5 128 87 1258 164 15 0 chr6 46450798 46450999 -142828555 - AluJo SINE Alu -108 204 1 517 313 133 0 chr6 46451038 46451249 -142828305 + MIR SINE MIR 20 258 -4 426 319 0 0 chr6 46451588 46451682 -142827872 + L2 LINE L2 3162 3255 -17 687 54 0 0 chr6 46452730 46452822 -142826732 + (TGGA)n Simple_repeat Simple_repeat 2 93 0 838 158 15 15 chr6 46453686 46453819 -142825735 - FLAM_A SINE Alu 0 133 1 1419 160 16 0 chr6 46454069 46454325 -142825229 + L1MD3 LINE L1 7730 7989 -6 2260 102 3 0 chr6 46454352 46454637 -142824917 + AluSg SINE Alu 1 286 -24 1039 114 0 16 chr6 46455059 46455314 -142824240 + (TTTC)n Simple_repeat Simple_repeat 1 250 0 2186 102 0 11 chr6 46455314 46455597 -142823957 - AluSq SINE Alu -33 280 1 751 294 30 0 chr6 46455730 46455927 -142823627 + MIR SINE MIR 57 259 -3 202 200 0 0 chr6 46456083 46456123 -142823431 + (CA)n Simple_repeat Simple_repeat 2 41 0 265 285 118 27 chr6 46456176 46456245 -142823309 + L1MEd LINE L1 3 64 -6055 1858 175 0 10 chr6 46456245 46456554 -142823000 + AluJo SINE Alu 4 309 -3 265 285 118 27 chr6 46456554 46456670 -142822884 + L1MEd LINE L1 64 205 -5914 346 299 13 45 chr6 46456910 46457064 -142822490 + L1MEd LINE L1 549 697 -5422 2348 101 0 0 chr6 46457112 46457409 -142822145 - AluSc SINE Alu -12 297 1 235 250 0 0 chr6 46457531 46457587 -142821967 - L2 LINE L2 -3 3310 3255 195 303 59 34 chr6 46457639 46457758 -142821796 - MIR3 SINE MIR -54 154 33 630 299 147 14 chr6 46458175 46458523 -142821031 + L2 LINE L2 2868 3261 -52 272 299 0 0 chr6 46458840 46458907 -142820647 + MIR3 SINE MIR 99 165 -43 1846 181 0 0 chr6 46459454 46459753 -142819801 - AluJo SINE Alu -13 299 1 1104 244 55 4 chr6 46459837 46460108 -142819446 + MLT1J LTR MaLR 1 285 -226 444 86 0 0 chr6 46460536 46460606 -142818948 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 2263 95 0 0 chr6 46461076 46461386 -142818168 + AluSx SINE Alu 1 310 0 565 267 93 39 chr6 46461783 46461954 -142817600 + L1ME LINE L1 4924 5084 -1078 1844 161 0 7 chr6 46461954 46462259 -142817295 + AluJo SINE Alu 1 303 0 565 267 93 39 chr6 46462259 46462740 -142816814 + L1ME LINE L1 5084 5618 -544 371 280 37 0 chr6 46462883 46462990 -142816564 + L2 LINE L2 2946 3056 -257 949 244 45 5 chr6 46463034 46463255 -142816299 + MIR SINE MIR 12 241 -21 748 196 0 15 chr6 46463589 46463722 -142815832 - FLAM_C SINE Alu 0 133 3 1791 124 56 8 chr6 46464049 46464362 -142815192 - AluSg SINE Alu 0 326 1 255 318 47 0 chr6 46464595 46464702 -142814852 + L2 LINE L2 2475 2586 -728 544 301 34 39 chr6 46464760 46464834 -142814720 - MIR SINE MIR -11 251 178 3635 104 41 6 chr6 46464834 46465343 -142814211 + MER1A DNA MER1_type 1 527 0 544 301 34 39 chr6 46465343 46465474 -142814080 - MIR SINE MIR -84 178 47 798 283 129 27 chr6 46465620 46465952 -142813602 + L2 LINE L2 2945 3310 -3 195 222 0 0 chr6 46468340 46468385 -142811169 + (TG)n Simple_repeat Simple_repeat 1 45 0 470 277 84 19 chr6 46468902 46469057 -142810497 + MIR SINE MIR 54 218 -44 191 152 0 0 chr6 46469680 46469713 -142809841 - L2 LINE L2 -1907 1407 1375 354 239 118 6 chr6 46470459 46470626 -142808928 + L1MC5 LINE L1 7268 7419 -389 350 289 21 80 chr6 46470771 46470958 -142808596 + MLT1L LTR MaLR 219 394 -221 1394 236 82 84 chr6 46470978 46471516 -142808038 - MLT1F LTR MaLR 0 542 6 2064 142 0 0 chr6 46471981 46472276 -142807278 - AluSq SINE Alu -18 295 1 401 284 11 0 chr6 46472962 46473134 -142806420 - L1ME LINE L1 -334 5828 5654 1584 225 96 56 chr6 46473168 46473702 -142805852 - MER74B LTR ERVL -18 604 50 376 304 59 50 chr6 46473710 46474032 -142805522 - L1ME LINE L1 -562 5600 5276 324 312 14 14 chr6 46474055 46474193 -142805361 - L1ME LINE L1 -908 5238 5101 807 273 85 37 chr6 46474313 46474665 -142804889 + L1MC4a LINE L1 5563 5931 -1877 450 273 86 0 chr6 46475508 46475636 -142803918 + MIR SINE MIR 35 173 -89 396 207 61 51 chr6 46476039 46476191 -142803363 + L1MC4a LINE L1 5673 5823 -298 1695 140 0 32 chr6 46476206 46476484 -142803070 + AluJb SINE Alu 1 269 -43 364 191 48 38 chr6 46476589 46476694 -142802860 + L1MC4a LINE L1 5840 5945 -1863 226 216 39 69 chr6 46476772 46476874 -142802680 + L1MC4a LINE L1 6074 6172 -1636 1888 146 14 0 chr6 46477016 46477311 -142802243 - AluJo SINE Alu 0 312 14 2331 106 35 0 chr6 46477346 46477694 -142801860 - L1PA16 LINE L1 -9 6157 5798 241 269 0 43 chr6 46478433 46478526 -142801028 - MER103 DNA DNA -12 154 66 304 253 42 11 chr6 46478643 46478738 -142800816 + MLT1L LTR MaLR 192 289 -326 1382 229 100 42 chr6 46478752 46479210 -142800344 + L1ME LINE L1 6 490 -5580 858 166 0 0 chr6 46479210 46479349 -142800205 + FLAM_C SINE Alu 1 139 -4 1277 236 15 32 chr6 46479371 46479778 -142799776 + L1ME LINE L1 495 894 -5176 578 287 84 31 chr6 46479798 46480059 -142799495 + MLT1L LTR MaLR 313 587 -28 321 264 170 0 chr6 46480078 46480184 -142799370 + MER39 LTR ERV1 1 124 -583 * 1527 194 47 6 chr6 46480162 46480560 -142798994 + LTR48 LTR ERV1 135 744 -43 2262 115 0 0 chr6 46480589 46480885 -142798669 + AluSc SINE Alu 1 296 -13 854 147 8 0 chr6 46480996 46481125 -142798429 - FLAM_C SINE Alu -2 131 2 263 227 261 0 chr6 46481397 46481485 -142798069 + MER5A DNA MER1_type 73 183 -6 190 315 28 19 chr6 46481584 46481633 -142797921 - MIR SINE MIR -55 207 160 2111 95 0 44 chr6 46481633 46481803 -142797751 - AluSq SINE Alu -16 297 121 216 0 0 0 chr6 46481803 46481827 -142797727 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2410 84 0 0 chr6 46481827 46482112 -142797442 - AluSp SINE Alu -28 285 1 2111 95 0 44 chr6 46482112 46482235 -142797319 - AluSq SINE Alu -190 123 16 190 315 28 19 chr6 46482235 46482293 -142797261 - MIR SINE MIR -102 160 99 1908 155 7 3 chr6 46482734 46483037 -142796517 - AluJo SINE Alu -4 308 5 1842 158 10 10 chr6 46483556 46483848 -142795706 + AluJo SINE Alu 1 292 -20 295 271 116 34 chr6 46483900 46484107 -142795447 + L1ME LINE L1 5617 5840 -281 2019 117 7 7 chr6 46484137 46484436 -142795118 - AluSx SINE Alu -13 299 1 263 265 0 0 chr6 46484966 46485034 -142794520 - MLT1L LTR MaLR 0 615 548 239 241 0 17 chr6 46485094 46485152 -142794402 - MLT1J1 LTR MaLR -319 127 71 * 254 200 0 0 chr6 46485108 46485153 -142794401 - LTR67 LTR ERVL -400 157 113 263 214 22 112 chr6 46485351 46485376 -142794178 - MLT1I LTR MaLR 0 409 383 1815 130 10 38 chr6 46485376 46485669 -142793885 - AluJo SINE Alu -16 296 12 263 214 22 112 chr6 46485669 46485732 -142793822 - MLT1I LTR MaLR -26 383 329 580 268 26 23 chr6 46485765 46485937 -142793617 - MLT1I LTR MaLR -197 212 39 190 174 0 87 chr6 46485950 46485996 -142793558 - L2 LINE L2 -7 3306 3265 598 156 0 0 chr6 46486013 46486109 -142793445 + FRAM SINE Alu 67 162 -14 2249 123 0 0 chr6 46486324 46486633 -142792921 + AluSx SINE Alu 1 309 -3 1452 213 30 65 chr6 46486761 46486793 -142792761 - MLT2C1 LTR ERVL -8 389 357 234 0 0 0 chr6 46486793 46486819 -142792735 + (TG)n Simple_repeat Simple_repeat 2 27 0 1452 213 30 65 chr6 46486819 46487189 -142792365 - MLT2C1 LTR ERVL -40 357 1 724 110 128 0 chr6 46487373 46487482 -142792072 + FLAM_C SINE Alu 1 123 -10 2376 87 0 0 chr6 46487487 46487775 -142791779 - AluSx SINE Alu -22 290 3 960 204 0 12 chr6 46487777 46487949 -142791605 - AluJ SINE Alu -5 307 138 303 266 43 11 chr6 46487989 46488083 -142791471 - AluJo SINE Alu -122 180 84 1236 113 24 66 chr6 46488083 46488296 -142791258 - AluJb SINE Alu -108 204 1 749 158 24 8 chr6 46488296 46488423 -142791131 - AluJ SINE Alu -176 136 8 1490 162 4 24 chr6 46488624 46488877 -142790677 + AluJo SINE Alu 1 248 -64 201 322 139 22 chr6 46488877 46489057 -142790497 + L3 LINE CR1 1146 1346 -231 1118 156 0 38 chr6 46489260 46489446 -142790108 - AluJb SINE Alu -21 291 113 2454 89 0 10 chr6 46489454 46489768 -142789786 + AluSp SINE Alu 1 311 -2 717 86 0 0 chr6 46489875 46489968 -142789586 - AluJ/FLAM SINE Alu -217 95 3 1282 162 4 60 chr6 46489997 46490232 -142789322 + AluJo SINE Alu 1 222 -90 22 35 0 0 chr6 46490271 46490300 -142789254 + AT_rich Low_complexity Low_complexity 1 29 0 2320 88 3 20 chr6 46490311 46490616 -142788938 + AluSx SINE Alu 1 300 -12 238 167 0 0 chr6 46490684 46490726 -142788828 + HsTC2 DNA Tc2 33 74 -1824 2050 121 24 3 chr6 46491603 46491892 -142787662 - AluSq SINE Alu -18 295 1 732 262 95 5 chr6 46492132 46492353 -142787201 + MIR SINE MIR 9 249 -13 556 203 77 39 chr6 46493729 46493911 -142785643 + MER5A DNA MER1_type 1 189 0 197 238 0 0 chr6 46493911 46493949 -142785605 + L3b LINE CR1 1532 1569 -14 191 208 0 57 chr6 46493983 46494036 -142785518 + L2 LINE L2 3178 3227 -86 1069 242 119 79 chr6 46494554 46494802 -142784752 + L1MC4a LINE L1 5785 6022 -1786 1370 180 120 27 chr6 46494802 46495136 -142784418 + MLT1A1 LTR MaLR 1 365 0 1069 242 119 79 chr6 46495136 46495510 -142784044 + L1MC4a LINE L1 6022 6432 -1376 942 189 18 6 chr6 46495626 46495795 -142783759 - AluJb SINE Alu -30 282 112 2256 97 0 3 chr6 46496313 46496601 -142782953 + AluSg SINE Alu 11 297 -13 183 42 0 0 chr6 46496665 46496689 -142782865 + (T)n Simple_repeat Simple_repeat 1 24 0 22 56 0 0 chr6 46497037 46497073 -142782481 + AT_rich Low_complexity Low_complexity 1 36 0 2254 97 33 0 chr6 46497350 46497650 -142781904 - AluSx SINE Alu -2 310 1 2072 163 0 0 chr6 46497662 46497969 -142781585 - AluJo SINE Alu -5 307 1 2391 64 7 0 chr6 46498438 46498735 -142780819 - AluY SINE Alu -12 299 1 22 0 0 0 chr6 46499227 46499249 -142780305 + AT_rich Low_complexity Low_complexity 1 22 0 239 353 39 10 chr6 46501574 46501676 -142777878 + MIR SINE MIR 16 120 -88 1354 150 9 4 chr6 46501691 46501917 -142777637 - AluJb SINE Alu -1 311 85 2160 120 0 3 chr6 46501967 46502267 -142777287 + AluSx SINE Alu 1 299 -13 519 257 151 6 chr6 46502371 46502433 -142777121 - MIR SINE MIR 0 262 210 636 150 278 0 chr6 46502433 46502606 -142776948 + MER58A DNA MER1_type 1 221 -3 519 257 151 6 chr6 46502606 46502722 -142776832 - MIR SINE MIR -52 210 58 2588 57 0 0 chr6 46502946 46503247 -142776307 - AluY SINE Alu -10 301 1 401 179 89 14 chr6 46503764 46503865 -142775689 + AluS SINE Alu 1 70 -233 1132 140 6 0 chr6 46504002 46504166 -142775388 - AluSg/x SINE Alu -14 296 132 2447 71 0 7 chr6 46504166 46504461 -142775093 - AluY SINE Alu -18 293 1 2469 84 0 3 chr6 46504590 46504900 -142774654 + AluY SINE Alu 1 309 -2 272 26 0 26 chr6 46505156 46505194 -142774360 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1489 34 0 0 chr6 46505195 46505370 -142774184 - L1PA2 LINE L1 -22 6133 5959 2385 84 0 13 chr6 46506263 46506562 -142772992 + AluSx SINE Alu 1 295 -17 2407 97 0 0 chr6 46507528 46507827 -142771727 - AluSg SINE Alu -11 299 1 1454 60 6 0 chr6 46508571 46508753 -142770801 - AluY SINE Alu -3 308 126 440 67 17 0 chr6 46508861 46508921 -142770633 - Alu SINE Alu -249 62 2 2280 62 41 7 chr6 46508963 46509254 -142770300 + AluY SINE Alu 2 302 -9 2382 96 0 6 chr6 46510918 46511232 -142768322 - AluSx SINE Alu 0 312 1 890 114 0 50 chr6 46511555 46511695 -142767859 - FLAM_A SINE Alu 0 133 1 2080 102 35 3 chr6 46511707 46511990 -142767564 - AluSx SINE Alu -20 292 1 217 255 0 0 chr6 46512119 46512166 -142767388 - MIR SINE MIR -197 65 19 2261 100 0 3 chr6 46513410 46513709 -142765845 + AluSg SINE Alu 1 298 -12 347 247 75 0 chr6 46513709 46513802 -142765752 - L1ME4a LINE L1 -287 5834 5735 2313 116 0 0 chr6 46513802 46514104 -142765450 + AluSx SINE Alu 1 302 -10 1273 105 0 12 chr6 46514105 46514276 -142765278 + AluSg/x SINE Alu 133 301 -11 407 221 55 16 chr6 46514280 46514407 -142765147 - L1ME4a LINE L1 -513 5608 5477 1500 108 5 0 chr6 46514435 46514630 -142764924 - AluSx SINE Alu -96 216 21 1490 204 3 17 chr6 46514663 46514957 -142764597 - AluJo SINE Alu -22 290 1 379 226 41 95 chr6 46514961 46515078 -142764476 - L1ME4a LINE L1 -2311 5497 5398 2104 115 17 0 chr6 46515078 46515373 -142764181 - AluSq SINE Alu -13 300 1 379 226 41 95 chr6 46515373 46515498 -142764056 - L1ME4a LINE L1 -2410 5398 5268 394 179 98 4 chr6 46516358 46516468 -142763086 + AluSp/q SINE Alu 243 298 -5 2418 73 7 0 chr6 46516627 46516930 -142762624 - AluY SINE Alu -6 305 1 1621 179 7 24 chr6 46517049 46517346 -142762208 - AluJo SINE Alu -20 292 1 364 277 147 17 chr6 46517415 46517646 -142761908 - L3 LINE CR1 -148 1429 1169 947 129 269 0 chr6 46519667 46519853 -142759701 - MER46A DNA MER2_type 0 236 1 2392 83 0 7 chr6 46521391 46521693 -142757861 + AluSx SINE Alu 1 300 -12 1565 155 70 22 chr6 46521704 46521975 -142757579 + AluJb SINE Alu 1 284 -28 21 0 0 0 chr6 46522258 46522279 -142757275 + AT_rich Low_complexity Low_complexity 1 21 0 2201 112 3 7 chr6 46522330 46522626 -142756928 + AluSx SINE Alu 1 295 -17 1886 147 20 7 chr6 46523374 46523673 -142755881 - AluJb SINE Alu -9 303 1 2350 95 0 10 chr6 46524205 46524511 -142755043 - AluSc SINE Alu -6 303 1 423 102 0 0 chr6 46524947 46525006 -142754548 + U2 snRNA snRNA 1 59 -129 2366 87 3 0 chr6 46527182 46527480 -142752074 - AluSc SINE Alu -10 299 1 1964 148 27 0 chr6 46529073 46529370 -142750184 - AluJb SINE Alu -7 305 1 2077 146 3 13 chr6 46529714 46530029 -142749525 - AluJo SINE Alu 0 312 1 201 243 0 0 chr6 46531388 46531425 -142748129 - L2 LINE L2 -19 3253 3217 312 316 91 8 chr6 46531463 46531607 -142747947 - MIR SINE MIR -55 207 54 2584 57 0 0 chr6 46531618 46531918 -142747636 + AluSc SINE Alu 1 300 -9 1749 137 27 20 chr6 46532099 46532391 -142747163 - AluJo SINE Alu -18 294 1 195 182 76 30 chr6 46532486 46532552 -142747002 - MIR SINE MIR -10 252 184 1127 101 0 7 chr6 46532714 46532863 -142746691 - AluSq/x SINE Alu -164 148 1 735 263 96 31 chr6 46532863 46533282 -142746272 - L1ME3 LINE L1 -278 5884 5439 1001 138 0 13 chr6 46533282 46533434 -142746120 - FRAM SINE Alu -15 161 12 429 252 34 37 chr6 46533450 46533692 -142745862 - L1ME3 LINE L1 -732 5432 5193 871 280 107 13 chr6 46533937 46534319 -142745235 - L1ME3 LINE L1 -188 5974 5557 483 276 150 8 chr6 46534321 46534567 -142744987 - L1ME3 LINE L1 -935 5211 4931 243 61 0 0 chr6 46534568 46534601 -142744953 + (TG)n Simple_repeat Simple_repeat 1 33 0 305 339 80 31 chr6 46535608 46535894 -142743660 + L3b LINE CR1 1167 1466 -117 357 159 0 0 chr6 46536037 46536100 -142743454 + A-rich Low_complexity Low_complexity 1 63 0 860 237 24 0 chr6 46536196 46536365 -142743189 + MER5B DNA MER1_type 5 177 -1 1924 164 0 7 chr6 46539069 46539374 -142740180 - AluJb SINE Alu -9 303 1 193 254 79 0 chr6 46539522 46539585 -142739969 + L2 LINE L2 3241 3308 -5 7084 185 148 34 chr6 46539713 46540501 -142739053 - MER52A LTR ERV1 0 1755 1058 2277 175 100 46 chr6 46540501 46540980 -142738574 + LTR22 LTR ERVK 5 509 0 7084 185 148 34 chr6 46540980 46541766 -142737788 - MER52A LTR ERV1 -697 1058 1 212 252 219 25 chr6 46541986 46542105 -142737449 + MIR SINE MIR 100 241 -21 313 274 108 20 chr6 46542170 46542272 -142737282 - MIR SINE MIR -132 130 20 2285 107 0 7 chr6 46542486 46542794 -142736760 - AluSg1 SINE Alu -3 306 1 2284 122 0 0 chr6 46542915 46543226 -142736328 + AluSx SINE Alu 1 311 -1 307 233 183 62 chr6 46543631 46543799 -142735755 + L1ME4a LINE L1 5839 6046 -75 2315 90 3 3 chr6 46543799 46544098 -142735456 - AluSx SINE Alu -13 299 1 307 233 183 62 chr6 46544098 46544169 -142735385 + L1ME4a LINE L1 6046 6107 -14 2151 123 0 0 chr6 46544171 46544456 -142735098 - AluSg SINE Alu -25 285 1 2384 81 0 10 chr6 46544456 46544754 -142734800 - AluSc SINE Alu -14 295 1 260 224 26 13 chr6 46544766 46544842 -142734712 - L1MA6 LINE L1 -271 6029 5953 1509 182 14 44 chr6 46544868 46545012 -142734542 + AluJo SINE Alu 9 141 -171 2532 60 0 0 chr6 46545012 46545312 -142734242 + AluY SINE Alu 1 300 -11 1509 182 14 44 chr6 46545312 46545463 -142734091 + AluJo SINE Alu 141 295 -17 452 324 7 7 chr6 46545606 46545748 -142733806 - MIR3 SINE MIR -10 198 57 1283 79 0 12 chr6 46545842 46546007 -142733547 + AluSg/x SINE Alu 138 300 -10 342 0 0 0 chr6 46546657 46546695 -142732859 + (CA)n Simple_repeat Simple_repeat 1 38 0 1044 139 0 32 chr6 46549702 46549860 -142729694 - FRAM SINE Alu -23 153 1 1920 153 3 41 chr6 46553329 46553643 -142725911 + 7SLRNA srpRNA srpRNA 1 302 -18 2348 100 7 3 chr6 46553713 46554023 -142725531 + AluSx SINE Alu 1 311 -1 2462 80 3 0 chr6 46554397 46554698 -142724856 - AluSg SINE Alu -8 302 1 203 291 126 48 chr6 46555063 46555166 -142724388 + MIR SINE MIR 35 145 -63 1529 65 20 20 chr6 46556186 46556387 -142723167 + L1PA8 LINE L1 5966 6166 -6 1521 170 89 0 chr6 46557010 46557269 -142722285 - AluJb SINE Alu -30 282 1 1031 111 7 0 chr6 46557616 46557751 -142721803 + AluSx SINE Alu 1 136 -176 2151 110 3 13 chr6 46557751 46558050 -142721504 + AluSx SINE Alu 1 296 -16 2317 104 0 0 chr6 46558050 46558347 -142721207 + AluSg SINE Alu 1 297 -13 243 303 0 0 chr6 46558366 46558455 -142721099 + L1MC4 LINE L1 6614 6702 -1340 * 257 191 16 0 chr6 46558436 46558499 -142721055 - L1MC4 LINE L1 -1339 6703 6640 1028 178 0 11 chr6 46558531 46558705 -142720849 + AluSx SINE Alu 123 294 -16 2346 72 0 33 chr6 46558956 46559260 -142720294 + AluY SINE Alu 1 294 -17 290 355 56 28 chr6 46559326 46559540 -142720014 - L2 LINE L2 -520 2794 2575 371 266 73 49 chr6 46560265 46560551 -142719003 + L1MC5 LINE L1 7636 7928 -33 210 261 117 27 chr6 46560741 46560852 -142718702 + L2 LINE L2 3158 3278 -35 2153 120 0 0 chr6 46561097 46561397 -142718157 + AluSx SINE Alu 1 300 -12 2211 102 0 10 chr6 46561510 46561805 -142717749 - AluSx SINE Alu -20 292 1 2071 141 3 3 chr6 46561816 46562128 -142717426 - AluSx SINE Alu 0 312 1 843 139 48 42 chr6 46563301 46563467 -142716087 + FRAM SINE Alu 1 167 -9 2197 94 20 14 chr6 46563632 46563768 -142715786 + AluSx SINE Alu 1 135 -177 1803 164 44 0 chr6 46563768 46564061 -142715493 + AluSx SINE Alu 1 306 -6 2197 94 20 14 chr6 46564061 46564221 -142715333 + AluSx SINE Alu 135 299 -13 1056 172 0 18 chr6 46564287 46564450 -142715104 - FRAM SINE Alu -6 160 1 24 32 0 0 chr6 46564588 46564619 -142714935 + AT_rich Low_complexity Low_complexity 1 31 0 4779 206 49 75 chr6 46565183 46565505 -142714049 + L1ME2 LINE L1 3726 4055 -2109 1684 193 7 13 chr6 46565505 46565810 -142713744 + AluJo SINE Alu 1 303 -9 4779 206 49 75 chr6 46565810 46566308 -142713246 + L1ME2 LINE L1 4055 4564 -1600 2064 107 14 7 chr6 46566308 46566631 -142712923 + AluSq SINE Alu 1 313 0 4779 206 49 75 chr6 46566631 46566734 -142712820 + L1ME2 LINE L1 4564 4668 -1496 2278 108 0 0 chr6 46566734 46567031 -142712523 + AluSc SINE Alu 1 297 -12 4779 206 49 75 chr6 46567031 46567527 -142712027 + L1ME2 LINE L1 4668 5175 -989 756 173 31 0 chr6 46567527 46567654 -142711900 + AluJo/FLAM SINE Alu 1 131 -171 2353 72 3 28 chr6 46567654 46567974 -142711580 - AluSp SINE Alu -1 312 1 4779 206 49 75 chr6 46567974 46568754 -142710800 + L1ME2 LINE L1 5174 5973 -191 2046 141 0 3 chr6 46568754 46569051 -142710503 + AluJb SINE Alu 1 296 -16 4779 206 49 75 chr6 46569051 46569159 -142710395 + L1ME2 LINE L1 5973 5972 -192 2429 84 0 13 chr6 46569159 46569470 -142710084 + AluY SINE Alu 3 309 -2 4779 206 49 75 chr6 46569470 46569645 -142709909 + L1ME2 LINE L1 5971 6149 -15 2143 96 48 3 chr6 46569764 46570056 -142709498 + AluSc SINE Alu 1 305 -4 2194 107 0 0 chr6 46570250 46570539 -142709015 + AluSx SINE Alu 9 297 -15 667 307 49 8 chr6 46570608 46570852 -142708702 - MIR SINE MIR -7 255 2 663 155 19 0 chr6 46570884 46570987 -142708567 - FLAM_A SINE Alu -3 139 35 466 199 40 177 chr6 46571332 46571615 -142707939 + L1ME LINE L1 5457 5707 -414 1361 107 4 2 chr6 46571767 46572011 -142707543 - AluSp SINE Alu -15 298 2 2050 91 0 7 chr6 46572026 46572338 -142707216 - AluY SINE Alu 0 310 1 496 208 79 0 chr6 46572444 46572545 -142707009 + FLAM_C SINE Alu 18 126 -17 414 288 125 32 chr6 46572578 46572958 -142706596 + L1ME4a LINE L1 5637 6057 -64 1970 146 0 19 chr6 46572958 46573273 -142706281 - AluSx SINE Alu -3 309 1 414 288 125 32 chr6 46573273 46573292 -142706262 + L1ME4a LINE L1 6057 6073 -48 825 157 31 0 chr6 46573640 46573799 -142705755 + AluSg/x SINE Alu 136 299 -13 2236 91 3 3 chr6 46573801 46574109 -142705445 + AluSx SINE Alu 1 308 -4 2408 51 0 3 chr6 46574208 46574503 -142705051 - AluY SINE Alu -17 294 1 661 157 0 119 chr6 46574601 46574735 -142704819 + FLAM_C SINE Alu 1 118 -15 1976 122 28 0 chr6 46574784 46575072 -142704482 - AluSx SINE Alu -16 296 1 1231 178 67 11 chr6 46575742 46576045 -142703509 + AluJb SINE Alu 2 319 0 2197 97 16 10 chr6 46576146 46576457 -142703097 + AluSq SINE Alu 1 313 0 514 203 68 31 chr6 46578795 46578958 -142700596 - L1MD3 LINE L1 -11 7984 7816 310 248 76 62 chr6 46578957 46579102 -142700452 - L1MD2 LINE L1 -127 6232 6086 * 1560 177 3 0 chr6 46579526 46579808 -142699746 + AluJo SINE Alu 2 284 -28 383 346 8 8 chr6 46580016 46580143 -142699411 - MIR3 SINE MIR -67 141 15 2022 89 0 60 chr6 46580271 46580449 -142699105 - AluSc SINE Alu -12 297 110 795 75 0 0 chr6 46580449 46580556 -142698998 + (TTC)n Simple_repeat Simple_repeat 2 108 0 2345 43 0 0 chr6 46580556 46580838 -142698716 - AluY SINE Alu -29 282 1 2022 89 0 60 chr6 46580838 46580974 -142698580 - AluSc SINE Alu -197 112 1 336 96 0 19 chr6 46581113 46581165 -142698389 + LTR67 LTR ERVL 3 53 -504 1454 151 33 19 chr6 46581258 46581554 -142698000 - AluJo SINE Alu 0 310 11 669 101 121 67 chr6 46581571 46581720 -142697834 - MER96B DNA MER1_type? -246 171 15 492 215 166 6 chr6 46581943 46582100 -142697454 - MER5A DNA MER1_type 0 189 4 673 211 122 0 chr6 46582175 46582331 -142697223 - MER96 DNA MER1_type 0 175 1 994 172 0 0 chr6 46582380 46582543 -142697011 - AluJb SINE Alu -13 299 137 2073 109 0 0 chr6 46582570 46582879 -142696675 - AluSx SINE Alu 0 309 1 1499 185 26 0 chr6 46582897 46583167 -142696387 - AluJb SINE Alu -35 277 1 435 180 50 10 chr6 46583347 46583447 -142696107 + L1ME4a LINE L1 5989 6092 -29 722 210 83 40 chr6 46583468 46583744 -142695810 - HAL1 LINE L1 0 2507 2220 426 253 20 69 chr6 46583795 46583997 -142695557 - HAL1 LINE L1 -429 2078 1887 2647 113 33 88 chr6 46583997 46584359 -142695195 - MLT2C2 LTR ERVL 0 464 134 1997 106 35 0 chr6 46584359 46584641 -142694913 + AluSx SINE Alu 1 292 -20 2647 113 33 88 chr6 46584641 46584764 -142694790 - MLT2C2 LTR ERVL -330 134 6 189 0 0 0 chr6 46584798 46584819 -142694735 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1834 125 0 73 chr6 46584922 46585076 -142694478 + AluJb SINE Alu 3 122 -190 2223 96 0 0 chr6 46585076 46585368 -142694186 + AluSx SINE Alu 9 300 -12 1834 125 0 73 chr6 46585368 46585541 -142694013 + AluJb SINE Alu 122 306 -6 2187 97 0 6 chr6 46585602 46585913 -142693641 + AluY SINE Alu 1 309 -2 408 143 0 0 chr6 46586598 46586668 -142692886 + (CA)n Simple_repeat Simple_repeat 1 70 0 279 0 0 0 chr6 46587042 46587073 -142692481 + (CA)n Simple_repeat Simple_repeat 1 31 0 * 516 16 0 0 chr6 46587072 46587133 -142692421 + (TC)n Simple_repeat Simple_repeat 1 61 0 493 214 92 8 chr6 46587150 46587281 -142692273 + MER103 DNA DNA 15 156 -10 619 304 22 11 chr6 46587520 46587704 -142691850 - MIR3 SINE MIR -7 201 16 2046 104 17 3 chr6 46587930 46588227 -142691327 - AluSq SINE Alu -8 305 5 360 249 191 32 chr6 46588359 46588548 -142691006 - L1MC4a LINE L1 -1682 6126 5908 235 205 33 131 chr6 46588557 46588626 -142690928 + MIR3 SINE MIR 92 145 -63 2186 83 0 0 chr6 46588626 46588914 -142690640 + AluY SINE Alu 9 296 -15 235 205 33 131 chr6 46588914 46588966 -142690588 + MIR3 SINE MIR 145 201 -7 2134 74 24 20 chr6 46589518 46589816 -142689738 - AluY SINE Alu -12 299 1 1092 98 0 0 chr6 46589817 46589960 -142689594 - AluSg SINE Alu -167 143 1 2076 118 0 0 chr6 46590964 46591253 -142688301 - AluSx SINE Alu -23 289 1 1682 154 7 17 chr6 46591265 46591557 -142687997 - AluJo SINE Alu -23 289 1 667 289 116 16 chr6 46591584 46591895 -142687659 + L2 LINE L2 1976 2317 -997 411 283 155 72 chr6 46592006 46592491 -142687063 + L2 LINE L2 1310 1864 -1450 2046 127 0 0 chr6 46592491 46592783 -142686771 + AluSg SINE Alu 1 292 -18 411 283 155 72 chr6 46592783 46592948 -142686606 + L2 LINE L2 1864 2014 -1300 2020 134 0 0 chr6 46594073 46594394 -142685160 + AluSg SINE Alu 1 310 0 1583 104 73 98 chr6 46595127 46595310 -142684244 - AluSq SINE Alu 0 313 140 2297 94 0 0 chr6 46595310 46595619 -142683935 - AluSg SINE Alu 0 310 2 1583 104 73 98 chr6 46595619 46595752 -142683802 - AluSq SINE Alu -173 140 5 2062 112 3 0 chr6 46595956 46596251 -142683303 + AluSq SINE Alu 1 296 -17 2123 88 0 3 chr6 46596254 46596573 -142682981 + AluY SINE Alu 1 318 0 23 33 0 0 chr6 46596593 46596623 -142682931 + AT_rich Low_complexity Low_complexity 1 30 0 293 338 58 0 chr6 46596625 46596764 -142682790 - MIR SINE MIR -6 256 110 657 266 47 0 chr6 46596775 46596875 -142682679 + MER69A DNA AcHobo 1 114 -2412 2121 129 0 0 chr6 46596875 46597184 -142682370 - AluSx SINE Alu -3 309 1 657 266 47 0 chr6 46597184 46597252 -142682302 + MER69A DNA AcHobo 114 177 0 2195 98 0 7 chr6 46597463 46597769 -142681785 - AluSq SINE Alu -9 304 1 634 260 6 39 chr6 46597819 46598000 -142681554 + MIR SINE MIR 5 179 -83 615 200 26 68 chr6 46598032 46598222 -142681332 - MER112 DNA MER1_type -7 253 72 1694 178 3 3 chr6 46598234 46598537 -142681017 + AluJb SINE Alu 1 303 -9 260 177 10 146 chr6 46598546 46598588 -142680966 - MER112 DNA MER1_type -177 83 60 2037 55 95 0 chr6 46598588 46598861 -142680693 - AluY SINE Alu -12 299 1 260 177 10 146 chr6 46598861 46598914 -142680640 - MER112 DNA MER1_type -200 60 1 293 250 0 0 chr6 46598914 46598986 -142680568 + MIR SINE MIR 191 262 0 2049 108 0 3 chr6 46599101 46599411 -142680143 - AluSx SINE Alu 0 309 1 350 260 114 0 chr6 46599420 46599543 -142680011 - L1ME4a LINE L1 -4 6117 5981 1892 131 3 10 chr6 46599555 46599852 -142679702 - AluSx SINE Alu -17 295 1 1978 90 0 21 chr6 46600036 46600370 -142679184 - AluY SINE Alu 0 328 1 276 259 152 56 chr6 46600370 46600406 -142679148 - L1MC4 LINE L1 -334 7708 7677 2009 125 7 0 chr6 46600406 46600703 -142678851 - AluSx SINE Alu -13 299 1 276 259 152 56 chr6 46600703 46600863 -142678691 - L1MC4 LINE L1 -365 7677 7493 2289 79 0 10 chr6 46600910 46601214 -142678340 + AluSg1 SINE Alu 1 301 -8 1132 111 72 0 chr6 46601331 46601511 -142678043 + MER30 DNA MER1_type 1 193 -37 234 62 0 0 chr6 46601692 46601724 -142677830 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 400 242 152 0 chr6 46601727 46601826 -142677728 - FLAM_A SINE Alu -19 114 1 1102 136 24 34 chr6 46601870 46601908 -142677646 + AluJo SINE Alu 84 121 -191 2382 61 3 0 chr6 46601908 46602204 -142677350 - AluSp SINE Alu -16 297 1 1102 136 24 34 chr6 46602204 46602371 -142677183 + AluJo SINE Alu 121 287 -25 1492 188 100 30 chr6 46602430 46602710 -142676844 - MLT1D LTR MaLR 0 505 264 1973 136 7 0 chr6 46602710 46602997 -142676557 - AluJb SINE Alu -15 297 9 1492 188 100 30 chr6 46602997 46603123 -142676431 - MLT1D LTR MaLR -241 264 148 817 205 74 0 chr6 46603010 46603200 -142676354 - MLT2C1 LTR ERVL -193 204 1 * 864 128 83 92 chr6 46603226 46603287 -142676267 + Tigger3(Golem) DNA MER2_type 1 61 -1170 2047 126 0 7 chr6 46603287 46603588 -142675966 + AluSx SINE Alu 1 299 -13 864 128 83 92 chr6 46603588 46603617 -142675937 + Tigger3(Golem) DNA MER2_type 61 89 -1142 2075 121 3 0 chr6 46603617 46603915 -142675639 + AluSq SINE Alu 1 299 -14 864 128 83 92 chr6 46603915 46604059 -142675495 + Tigger3(Golem) DNA MER2_type 89 204 -1027 1816 129 3 46 chr6 46604063 46604388 -142675166 + AluJo SINE Alu 2 312 0 2949 124 56 28 chr6 46604389 46604794 -142674760 + Tigger3(Golem) DNA MER2_type 2515 2938 -91 2177 115 3 0 chr6 46604794 46605098 -142674456 - AluSx SINE Alu -7 305 1 2949 124 56 28 chr6 46605098 46605192 -142674362 + Tigger3(Golem) DNA MER2_type 2938 3028 -1 315 0 0 0 chr6 46605193 46605228 -142674326 + (TG)n Simple_repeat Simple_repeat 2 36 0 2473 169 47 89 chr6 46605229 46605284 -142674270 - L1ME1 LINE L1 -122 6044 5988 1509 100 0 0 chr6 46605284 46605506 -142674048 + AluSq SINE Alu 87 308 0 2473 169 47 89 chr6 46605506 46606069 -142673485 - L1ME1 LINE L1 -178 5988 5451 449 225 11 58 chr6 46606139 46606330 -142673224 - L1MC5 LINE L1 -781 7180 6999 1962 129 7 10 chr6 46606384 46606686 -142672868 - AluSx SINE Alu -11 301 1 1324 165 120 0 chr6 46606691 46606957 -142672597 - AluJb SINE Alu -1 311 14 2092 108 10 0 chr6 46607039 46607335 -142672219 + AluSg SINE Alu 1 299 -11 1969 130 10 0 chr6 46607411 46607725 -142671829 + AluSx SINE Alu 1 312 0 2063 110 3 3 chr6 46608059 46608358 -142671196 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr6 46608555 46608576 -142670978 + AT_rich Low_complexity Low_complexity 1 21 0 2101 104 3 16 chr6 46608795 46609102 -142670452 - AluSg SINE Alu -7 303 1 580 207 76 22 chr6 46609778 46609960 -142669594 + MIR SINE MIR 12 193 -62 204 158 0 0 chr6 46609960 46609998 -142669556 + (TG)n Simple_repeat Simple_repeat 2 39 0 237 197 0 0 chr6 46610002 46610068 -142669486 + GA-rich Low_complexity Low_complexity 1 66 0 2169 96 0 7 chr6 46610100 46610402 -142669152 + AluSx SINE Alu 1 300 -12 2099 138 0 0 chr6 46610412 46610724 -142668830 + AluSx SINE Alu 1 312 0 1637 171 12 40 chr6 46611375 46611696 -142667858 - AluSx SINE Alu 0 312 1 336 215 41 132 chr6 46611731 46611776 -142667778 + MIR SINE MIR 27 74 -188 2332 64 3 0 chr6 46611776 46612072 -142667482 - AluSp SINE Alu -16 297 1 336 215 41 132 chr6 46612072 46612147 -142667407 + MIR SINE MIR 74 136 -126 403 154 0 3 chr6 46612507 46612577 -142666977 + AluJb SINE Alu 1 55 -253 1945 131 7 0 chr6 46612577 46612874 -142666680 + AluSx SINE Alu 1 299 -13 1687 157 0 0 chr6 46612874 46613140 -142666414 + AluJb SINE Alu 44 310 -2 186 191 0 0 chr6 46613237 46613279 -142666275 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 2161 112 0 3 chr6 46613356 46613651 -142665903 + AluSq SINE Alu 2 295 -18 1620 134 7 60 chr6 46613681 46613979 -142665575 + AluJb SINE Alu 1 282 -30 180 0 0 0 chr6 46613983 46614003 -142665551 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2140 66 0 72 chr6 46614335 46614668 -142664886 + AluY SINE Alu 1 309 -2 2348 67 0 10 chr6 46614843 46615156 -142664398 - AluY SINE Alu -1 310 1 1992 105 10 30 chr6 46615193 46615497 -142664057 + AluSx SINE Alu 1 298 -14 234 158 59 50 chr6 46615498 46615599 -142663955 + L1MC5 LINE L1 7586 7687 -274 2194 104 3 0 chr6 46615672 46615970 -142663584 - AluSx SINE Alu -12 300 2 1899 113 0 31 chr6 46615971 46616262 -142663292 - AluSx SINE Alu -30 282 1 899 131 141 106 chr6 46616414 46616456 -142663098 - MER33 DNA MER1_type -2261 324 285 493 215 222 0 chr6 46616456 46616591 -142662963 - FAM SINE Alu -10 165 1 899 131 141 106 chr6 46616591 46616649 -142662905 - MER33 DNA MER1_type -2300 285 231 1699 153 35 0 chr6 46616649 46616936 -142662618 - AluSx SINE Alu -15 297 1 1785 110 96 0 chr6 46616940 46617212 -142662342 - AluSx SINE Alu -14 298 1 899 131 141 106 chr6 46617212 46617236 -142662318 - MER33 DNA MER1_type -2356 229 207 1778 167 0 0 chr6 46617236 46617549 -142662005 - AluJb SINE Alu 0 313 1 899 131 141 106 chr6 46617549 46617728 -142661826 - MER33 DNA MER1_type -2378 207 2 555 283 26 7 chr6 46617729 46617881 -142661673 + LTR33 LTR ERVL 26 180 -341 392 167 167 42 chr6 46618045 46618141 -142661413 + LTR33 LTR ERVL 410 517 -4 2147 83 0 45 chr6 46618191 46618366 -142661188 - AluSx SINE Alu -14 298 142 2056 103 3 0 chr6 46618366 46618656 -142660898 - AluY SINE Alu -20 291 1 2147 83 0 45 chr6 46618656 46618792 -142660762 - AluSx SINE Alu -170 142 1 1849 112 12 0 chr6 46618872 46619156 -142660398 - AluSx SINE Alu 0 309 23 1045 195 51 31 chr6 46619166 46619422 -142660132 - AluJo SINE Alu -14 298 38 2061 133 0 0 chr6 46619440 46619749 -142659805 + AluSc SINE Alu 1 309 0 1610 171 3 32 chr6 46619793 46620109 -142659445 - AluJb SINE Alu -4 308 2 40 49 0 0 chr6 46620109 46620170 -142659384 + AT_rich Low_complexity Low_complexity 1 61 0 1880 123 3 3 chr6 46620173 46620480 -142659074 + AluSx SINE Alu 1 307 0 633 133 0 9 chr6 46620609 46620714 -142658840 + FLAM_C SINE Alu 35 138 -5 1045 102 80 6 chr6 46620824 46621000 -142658554 + MER2 DNA MER2_type 20 208 -137 2240 99 0 0 chr6 46621096 46621399 -142658155 + AluSx SINE Alu 1 303 -9 2021 119 0 22 chr6 46621930 46622208 -142657346 + AluSx SINE Alu 1 272 -40 225 0 0 0 chr6 46622208 46622233 -142657321 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1516 180 18 25 chr6 46622495 46622801 -142656753 - AluJb SINE Alu 0 304 1 435 179 167 0 chr6 46622875 46622953 -142656601 + AluJ/FLAM SINE Alu 1 91 -221 961 195 146 4 chr6 46622992 46623218 -142656336 + AluJo SINE Alu 47 304 -8 1739 158 3 19 chr6 46623218 46623534 -142656020 + AluJb SINE Alu 1 311 -1 284 293 86 43 chr6 46623643 46623759 -142655795 - MIR SINE MIR -121 141 21 188 103 63 10 chr6 46623881 46623923 -142655631 - MIR SINE MIR -50 158 106 2468 90 0 0 chr6 46624041 46624353 -142655201 + AluSx SINE Alu 1 312 0 2026 65 12 4 chr6 46624433 46624680 -142654874 - AluSq SINE Alu -64 249 1 1545 186 81 28 chr6 46626520 46626917 -142652637 - L1MB5 LINE L1 -58 6116 5699 180 0 0 0 chr6 46627047 46627067 -142652487 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2179 83 3 3 chr6 46627071 46627361 -142652193 - AluSg SINE Alu -20 290 1 1988 130 7 23 chr6 46628236 46628544 -142651010 - AluSx SINE Alu -9 303 1 36 40 0 0 chr6 46628970 46629020 -142650534 + AT_rich Low_complexity Low_complexity 1 50 0 679 139 0 0 chr6 46629031 46629132 -142650422 - AluJ/FLAM SINE Alu -210 102 2 2017 153 0 0 chr6 46629526 46629820 -142649734 - AluSg SINE Alu -16 294 1 369 62 0 0 chr6 46632117 46632165 -142647389 + (T)n Simple_repeat Simple_repeat 1 48 0 1486 204 36 4 chr6 46632503 46632777 -142646777 - AluJo SINE Alu -24 288 6 207 69 0 0 chr6 46633069 46633098 -142646456 + (T)n Simple_repeat Simple_repeat 1 29 0 655 202 0 47 chr6 46635461 46635590 -142643964 + AluSq/x SINE Alu 2 124 -188 1942 159 10 0 chr6 46636346 46636642 -142642912 + AluSq SINE Alu 1 299 -14 1246 170 58 0 chr6 46637188 46637411 -142642143 - AluJo SINE Alu -66 246 11 2393 84 0 0 chr6 46637676 46637973 -142641581 - AluSx SINE Alu -15 297 1 2180 108 3 13 chr6 46638356 46638662 -142640892 - AluSc SINE Alu -6 303 1 465 177 150 35 chr6 46638668 46638781 -142640773 - AluJb SINE Alu -185 127 2 2052 108 38 0 chr6 46639305 46639593 -142639961 + AluSp SINE Alu 1 299 -14 1844 141 22 4 chr6 46639833 46640109 -142639445 + AluJb SINE Alu 29 309 -3 181 385 58 0 chr6 46640314 46640418 -142639136 - MIR SINE MIR -96 166 57 270 243 214 19 chr6 46640449 46640552 -142639002 - MIR3 SINE MIR -25 183 61 605 281 101 17 chr6 46640594 46640832 -142638722 + MIR SINE MIR 2 259 -3 204 310 169 28 chr6 46641137 46641279 -142638275 + MIR SINE MIR 11 172 -90 281 51 51 0 chr6 46641299 46641338 -142638216 - MER5B DNA MER1_type -13 165 125 1794 113 0 51 chr6 46641349 46641624 -142637930 + AluSx SINE Alu 1 261 -51 954 226 108 24 chr6 46641695 46642075 -142637479 + LTR56 LTR ERV1 9 420 -25 256 220 192 56 chr6 46642547 46642761 -142636793 - MER20B DNA MER1_type -1 782 540 2124 144 0 7 chr6 46642765 46643070 -142636484 + AluSx SINE Alu 1 303 -9 7792 109 50 20 chr6 46643091 46643307 -142636247 + Tigger1 DNA MER2_type 863 1071 -1347 1276 170 99 42 chr6 46643307 46643590 -142635964 - AluJb SINE Alu -3 299 1 7792 109 50 20 chr6 46643590 46643752 -142635802 + Tigger1 DNA MER2_type 1071 1227 -1191 2387 87 3 7 chr6 46643752 46644062 -142635492 - AluSx SINE Alu -3 309 1 7792 109 50 20 chr6 46644062 46644988 -142634566 + Tigger1 DNA MER2_type 1227 2207 -211 1386 158 19 0 chr6 46644988 46645068 -142634486 - AluJo SINE Alu -99 213 136 2460 93 0 0 chr6 46645068 46645369 -142634185 - AluSx SINE Alu -11 301 1 1386 158 19 0 chr6 46645369 46645497 -142634057 - AluJo SINE Alu -176 136 1 601 120 232 0 chr6 46645499 46645641 -142633913 + Tigger1 DNA MER2_type 2243 2417 -1 2141 111 14 14 chr6 46645695 46645992 -142633562 - AluSx SINE Alu -15 297 1 232 242 199 43 chr6 46646044 46646162 -142633392 - MER20B DNA MER1_type -591 192 41 1809 140 58 14 chr6 46646162 46646455 -142633099 + AluJo SINE Alu 1 306 -6 232 242 199 43 chr6 46646455 46646497 -142633057 - MER20B DNA MER1_type -742 41 7 250 207 164 86 chr6 46646593 46646733 -142632821 - MIR SINE MIR 0 262 112 259 136 23 0 chr6 46646918 46646962 -142632592 - MIR3 SINE MIR -6 202 158 2271 114 3 9 chr6 46646979 46647158 -142632396 - AluSq SINE Alu 0 313 135 2584 71 0 3 chr6 46647158 46647469 -142632085 - AluY SINE Alu -1 310 1 2271 114 3 9 chr6 46647469 46647604 -142631950 - AluSq SINE Alu -178 135 1 244 335 89 6 chr6 46648011 46648169 -142631385 - MIR3 SINE MIR -20 188 18 2072 107 43 0 chr6 46648908 46649188 -142630366 - AluSx SINE Alu -19 293 2 2393 76 3 7 chr6 46649217 46649519 -142630035 + AluY SINE Alu 1 301 -10 351 300 36 21 chr6 46649801 46649941 -142629613 + MIR SINE MIR 103 244 -18 353 270 127 24 chr6 46650167 46650293 -142629261 - MIR3 SINE MIR -40 168 30 2130 115 3 7 chr6 46650590 46650877 -142628677 - AluSx SINE Alu -13 299 14 255 200 18 0 chr6 46651056 46651111 -142628443 + AluJb SINE Alu 81 136 -166 2020 134 3 26 chr6 46651112 46651257 -142628297 + AluJb SINE Alu 1 148 -164 2471 92 0 0 chr6 46651257 46651563 -142627991 + AluSg SINE Alu 1 306 -4 2020 134 3 26 chr6 46651563 46651723 -142627831 + AluJb SINE Alu 148 299 -13 249 250 18 0 chr6 46652162 46652218 -142627336 + MIR3 SINE MIR 152 208 0 293 251 156 35 chr6 46652412 46652563 -142626991 - MIR3 SINE MIR -54 154 17 365 299 62 26 chr6 46652863 46653056 -142626498 + MIR SINE MIR 33 235 -27 * 443 201 75 119 chr6 46653029 46653107 -142626447 - MIR SINE MIR -4 258 189 2353 95 0 0 chr6 46653107 46653403 -142626151 - AluY SINE Alu -15 296 1 443 201 75 119 chr6 46653403 46653483 -142626071 - MIR SINE MIR -73 189 107 704 134 50 0 chr6 46653499 46653618 -142625936 + Tigger1 DNA MER2_type 1634 1758 -660 302 325 12 6 chr6 46655056 46655225 -142624329 + (TG)n Simple_repeat Simple_repeat 1 170 0 432 302 69 11 chr6 46655476 46655665 -142623889 + MIR SINE MIR 27 226 -36 281 330 0 0 chr6 46655831 46655925 -142623629 + (CA)n Simple_repeat Simple_repeat 1 94 0 207 284 219 7 chr6 46656795 46656950 -142622604 - L2 LINE L2 -220 3052 2865 312 243 100 50 chr6 46656965 46657105 -142622449 - L2 LINE L2 -8 3305 3159 2291 80 0 7 chr6 46657128 46657448 -142622106 - AluY SINE Alu 0 318 1 471 250 71 0 chr6 46657448 46657560 -142621994 - MIR SINE MIR -36 226 107 2160 119 10 0 chr6 46658167 46658460 -142621094 - AluSx SINE Alu -16 296 1 2344 110 0 19 chr6 46659344 46659479 -142620075 + AluSx SINE Alu 1 137 -175 2288 110 0 0 chr6 46659479 46659801 -142619753 + AluSg SINE Alu 1 322 0 2344 110 0 19 chr6 46659801 46659982 -142619572 + AluSx SINE Alu 137 312 0 1432 103 0 0 chr6 46659991 46660175 -142619379 + AluSg/x SINE Alu 120 303 -7 1585 179 3 20 chr6 46660928 46661225 -142618329 + AluJo SINE Alu 5 296 -16 2051 125 4 0 chr6 46661233 46661514 -142618040 + AluSg SINE Alu 10 291 -19 180 97 0 0 chr6 46661520 46661551 -142618003 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 469 204 152 8 chr6 46661646 46661778 -142617776 + LTR16C LTR ERVL 339 489 -2 277 243 140 9 chr6 46661786 46661893 -142617661 - MIR SINE MIR -15 247 127 1981 115 66 0 chr6 46661947 46662234 -142617320 - AluSx SINE Alu -5 307 2 317 247 59 53 chr6 46662245 46662415 -142617139 - L1ME LINE L1 -452 5669 5499 2355 58 10 3 chr6 46663127 46663418 -142616136 - AluY SINE Alu -18 293 1 371 183 70 92 chr6 46663421 46663563 -142615991 - MIR SINE MIR -46 216 78 224 232 18 36 chr6 46663722 46663778 -142615776 - MIR SINE MIR -190 72 18 * 832 201 73 0 chr6 46663772 46663936 -142615618 + MER5A DNA MER1_type 8 183 -6 2438 85 0 0 chr6 46663977 46664271 -142615283 - AluSc SINE Alu -15 294 1 2271 98 14 0 chr6 46664287 46664582 -142614972 - AluSx SINE Alu -13 299 1 553 203 116 22 chr6 46664585 46664723 -142614831 + MER5B DNA MER1_type 8 158 -20 1959 157 6 10 chr6 46664893 46665206 -142614348 - AluJo SINE Alu 0 312 1 989 183 136 53 chr6 46665543 46665586 -142613968 - LTR50 LTR ERVL -2 793 755 1844 107 0 81 chr6 46665586 46665926 -142613628 - AluJb SINE Alu 0 315 1 989 183 136 53 chr6 46665926 46666093 -142613461 - LTR50 LTR ERVL -40 755 603 332 0 45 0 chr6 46666093 46666137 -142613417 + L1PA6 LINE L1 6107 6152 -2 989 183 136 53 chr6 46666137 46666247 -142613307 - LTR50 LTR ERVL -192 603 444 248 232 101 14 chr6 46666270 46666339 -142613215 - LTR50 LTR ERVL -474 321 247 691 230 176 20 chr6 46666556 46666760 -142612794 - MIR SINE MIR -7 255 20 1902 107 0 0 chr6 46666902 46667155 -142612399 - AluSx SINE Alu -16 296 44 450 355 28 67 chr6 46667255 46667582 -142611972 - L2 LINE L2 -61 3211 2898 650 139 0 35 chr6 46669114 46669228 -142610326 - MER63 DNA MER1_type -5 1056 947 691 171 18 47 chr6 46669228 46669398 -142610156 - MER106B DNA MER1_type 0 1059 895 2183 141 0 6 chr6 46669405 46669717 -142609837 - AluJb SINE Alu -1 311 2 596 215 7 0 chr6 46669757 46669892 -142609662 - MER63 DNA MER1_type -87 974 839 305 196 0 0 chr6 46669894 46669950 -142609604 - MER63 DNA MER1_type -1005 56 1 910 28 0 0 chr6 46670705 46670811 -142608743 - U1 snRNA snRNA -59 106 1 1926 115 89 0 chr6 46670958 46671227 -142608327 - AluSx SINE Alu -19 293 1 2210 108 3 38 chr6 46671234 46671550 -142608004 - AluSq SINE Alu -6 307 3 2363 96 0 13 chr6 46671571 46671884 -142607670 - AluSc SINE Alu 0 309 1 2169 118 3 0 chr6 46671947 46672235 -142607319 + AluSq SINE Alu 1 289 -24 2046 157 15 48 chr6 46672326 46672720 -142606834 + MLT1B LTR MaLR 10 390 0 839 102 0 0 chr6 46673226 46673344 -142606210 - FLAM_C SINE Alu -15 118 1 2321 108 0 0 chr6 46673452 46673747 -142605807 + AluSc SINE Alu 1 295 -14 228 264 97 0 chr6 46673960 46674032 -142605522 + MIR SINE MIR 108 186 -76 534 220 43 7 chr6 46674877 46675018 -142604536 + MIR3 SINE MIR 15 160 -48 1948 136 36 0 chr6 46675568 46675847 -142603707 - AluSg SINE Alu -21 289 1 1933 141 0 0 chr6 46675940 46676202 -142603352 + AluJb SINE Alu 16 277 -35 217 271 86 0 chr6 46676441 46676511 -142603043 + L2 LINE L2 3167 3242 -30 653 245 55 12 chr6 46676666 46676829 -142602725 + L1MC4a LINE L1 5568 5737 -2071 1230 177 24 10 chr6 46676832 46677041 -142602513 + AluJo SINE Alu 87 298 -14 650 213 0 0 chr6 46677217 46677339 -142602215 + FLAM_A SINE Alu 1 122 -11 390 287 105 81 chr6 46677342 46677407 -142602147 + L1MC4a LINE L1 5875 5937 -1871 2350 104 0 0 chr6 46677407 46677704 -142601850 + AluSg SINE Alu 1 297 -13 390 287 105 81 chr6 46677704 46677934 -142601620 + L1MC4a LINE L1 5937 6177 -1631 2282 100 0 7 chr6 46678201 46678501 -142601053 - AluSg SINE Alu -12 298 1 301 219 27 0 chr6 46678532 46678605 -142600949 + L1ME4a LINE L1 5967 6041 -80 224 281 0 0 chr6 46678639 46678696 -142600858 + GA-rich Low_complexity Low_complexity 1 57 0 505 225 6 124 chr6 46679367 46679562 -142599992 + MIR3 SINE MIR 40 210 -45 2184 101 13 33 chr6 46679564 46679870 -142599684 - AluSx SINE Alu -12 300 1 1875 124 0 0 chr6 46679895 46680152 -142599402 + AluSq SINE Alu 45 301 -12 2349 144 5 23 chr6 46680164 46680632 -142598922 + L1MB5 LINE L1 5752 6181 -2 2054 80 91 21 chr6 46681611 46681898 -142597656 + AluSx SINE Alu 2 308 -4 220 304 13 25 chr6 46681906 46681985 -142597569 - MER5A DNA MER1_type -49 140 63 706 267 74 9 chr6 46682370 46682587 -142596967 - MIR SINE MIR 0 262 32 401 156 36 8 chr6 46682611 46682703 -142596851 - AluJ/FLAM SINE Alu -239 63 1 547 138 0 0 chr6 46682721 46682801 -142596753 + AluS SINE Alu 2 81 -232 492 259 31 43 chr6 46682851 46683013 -142596541 - MIR3 SINE MIR -38 170 11 1919 153 14 0 chr6 46683295 46683589 -142595965 - AluSx SINE Alu -14 298 1 322 331 13 40 chr6 46683722 46683823 -142595731 - MIR SINE MIR -7 255 158 2279 118 0 0 chr6 46683823 46684119 -142595435 - AluSx SINE Alu -16 296 1 322 331 13 40 chr6 46684119 46684168 -142595386 - MIR SINE MIR -104 158 109 2421 98 0 0 chr6 46684217 46684514 -142595040 - AluSg SINE Alu -13 297 1 307 283 47 89 chr6 46685069 46685260 -142594294 + L1MC4 LINE L1 6521 6703 -1339 * 312 365 47 0 chr6 46685214 46685321 -142594233 - L1MC4 LINE L1 -1339 6703 6592 1177 159 5 0 chr6 46685412 46685601 -142593953 - AluSg/x SINE Alu -2 308 119 2119 113 34 3 chr6 46685757 46686049 -142593505 - AluSq SINE Alu -12 301 1 1021 244 126 40 chr6 46686089 46686462 -142593092 - MLT1G1 LTR MaLR -6 589 185 334 222 111 0 chr6 46686492 46686573 -142592981 - MLT1G1 LTR MaLR -504 91 2 2319 96 3 0 chr6 46687063 46687355 -142592199 + AluSx SINE Alu 3 295 -17 380 347 17 23 chr6 46687355 46687528 -142592026 - HAL1 LINE L1 -958 1549 1378 1369 277 46 90 chr6 46687575 46687963 -142591591 + MER21B LTR ERV1 39 349 -514 2458 84 7 7 chr6 46687963 46688273 -142591281 + AluSx SINE Alu 1 310 -2 1369 277 46 90 chr6 46688273 46688632 -142590922 + MER21B LTR ERV1 349 722 -141 696 272 80 10 chr6 46689069 46689308 -142590246 + LTR16A1 LTR ERVL 195 457 0 552 289 118 27 chr6 46689335 46689667 -142589887 + MLT1I LTR MaLR 61 390 -19 1138 218 68 0 chr6 46689684 46689918 -142589636 + MIR SINE MIR 3 252 -10 1684 181 33 41 chr6 46690012 46690376 -142589178 + MLT1A1 LTR MaLR 5 365 0 406 187 36 25 chr6 46690541 46690675 -142588879 + MER63 DNA MER1_type 700 1058 -2 380 177 13 0 chr6 46690955 46691034 -142588520 + MER116 DNA Mariner 1 80 0 2273 83 10 3 chr6 46691584 46691874 -142587680 - AluSq SINE Alu -21 292 1 541 221 9 0 chr6 46693050 46693163 -142586391 - MER81 DNA DNA 0 114 1 2237 116 0 0 chr6 46693227 46693521 -142586033 + AluSx SINE Alu 2 295 -17 195 185 31 46 chr6 46693748 46693813 -142585741 - MIR SINE MIR -50 212 149 229 261 109 0 chr6 46694691 46694783 -142584771 + L1ME4a LINE L1 5830 5931 -190 266 240 104 56 chr6 46694788 46694913 -142584641 + L1ME4a LINE L1 5980 6110 -11 856 240 120 9 chr6 46695055 46695288 -142584266 + MIR SINE MIR 4 262 0 715 212 47 42 chr6 46695293 46695505 -142584049 + MIR SINE MIR 12 224 -38 2346 106 0 0 chr6 46695542 46695844 -142583710 - AluSx SINE Alu -10 302 1 243 239 42 0 chr6 46696173 46696244 -142583310 + MER69 DNA AcHobo 2444 2517 -9 233 229 0 0 chr6 46696397 46696445 -142583109 + Tigger5 DNA MER2_type 2 49 -2274 509 42 14 0 chr6 46696464 46696536 -142583018 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 328 41 0 61 chr6 46696538 46696587 -142582967 + MLT2B2 LTR ERVL 470 515 0 2301 118 0 7 chr6 46696780 46697084 -142582470 + AluSx SINE Alu 1 302 -10 335 256 30 0 chr6 46697142 46697298 -142582256 + L1MC4a LINE L1 5709 5903 -1905 750 229 0 0 chr6 46697340 46697497 -142582057 + MER46C DNA MER2_type 2 158 -180 316 222 189 0 chr6 46697519 46697609 -142581945 + MER81 DNA DNA 7 113 -1 509 212 26 0 chr6 46697612 46697725 -142581829 + MER46C DNA MER2_type 212 327 -11 297 205 128 17 chr6 46697782 46697899 -142581655 + L1MC4a LINE L1 6042 6171 -1637 2094 102 39 3 chr6 46699083 46699367 -142580187 - AluJb SINE Alu -6 306 13 252 318 35 0 chr6 46699449 46699534 -142580020 + MIR SINE MIR 80 167 -95 767 285 88 13 chr6 46699822 46700127 -142579427 + MLT1J2 LTR MaLR 113 440 -10 433 275 51 0 chr6 46701109 46701247 -142578307 + L1ME LINE L1 5626 5770 -392 1698 185 23 0 chr6 46701272 46701574 -142577980 + AluJb SINE Alu 1 309 -3 968 275 142 32 chr6 46701593 46702090 -142577464 - MLT1G LTR MaLR 0 590 40 791 217 49 107 chr6 46702155 46702500 -142577054 - MLT1I LTR MaLR -14 395 71 201 147 0 0 chr6 46702701 46702735 -142576819 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 840 282 34 52 chr6 46703271 46703658 -142575896 + LTR16A LTR ERVL 65 457 0 218 250 97 0 chr6 46703729 46703801 -142575753 - MIR SINE MIR -1 261 183 1432 113 5 0 chr6 46703834 46704029 -142575525 - AluSp SINE Alu 0 313 118 343 61 0 0 chr6 46704032 46704081 -142575473 + HY3 scRNA scRNA 52 100 -1 29 0 0 0 chr6 46704081 46704110 -142575444 + AT_rich Low_complexity Low_complexity 1 29 0 1984 120 7 11 chr6 46704115 46704433 -142575121 + AluSx SINE Alu 1 317 0 2094 139 0 35 chr6 46704433 46704749 -142574805 + AluSx SINE Alu 1 305 -7 995 121 14 0 chr6 46704751 46704891 -142574663 + AluSp SINE Alu 1 142 -171 2275 96 0 7 chr6 46706584 46706876 -142572678 - AluSg SINE Alu -20 290 1 952 105 24 0 chr6 46706998 46707122 -142572432 + AluSg/x SINE Alu 119 245 -65 217 26 53 26 chr6 46707136 46707174 -142572380 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 185 265 41 0 chr6 46707932 46707981 -142571573 + MIR SINE MIR 203 253 -9 306 303 76 8 chr6 46708840 46708959 -142570595 + MIR3 SINE MIR 6 132 -76 224 245 0 19 chr6 46709204 46709257 -142570297 + MIR3 SINE MIR 103 154 -54 375 113 0 0 chr6 46711428 46711490 -142568064 + (TG)n Simple_repeat Simple_repeat 2 63 0 223 290 93 47 chr6 46712294 46712401 -142567153 - MER5B DNA MER1_type -33 145 34 1267 21 0 48 chr6 46712403 46712591 -142566963 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1280 158 90 86 chr6 46712597 46712724 -142566830 - AluJo SINE Alu -32 280 155 2541 58 3 10 chr6 46712724 46713032 -142566522 - AluY SINE Alu -5 306 1 1280 158 90 86 chr6 46713032 46713183 -142566371 - AluJo SINE Alu -157 155 1 662 232 111 14 chr6 46713257 46713464 -142566090 + MIR SINE MIR 23 249 -13 861 233 65 25 chr6 46714254 46714499 -142565055 - MIR SINE MIR -3 259 5 425 262 40 32 chr6 46714599 46714725 -142564829 - MIR SINE MIR -117 145 19 289 266 21 21 chr6 46715758 46715852 -142563702 - MIR3 SINE MIR -49 159 66 365 273 39 93 chr6 46715858 46715977 -142563577 - MIR SINE MIR -5 257 155 1956 143 0 33 chr6 46715977 46716278 -142563276 - AluJo SINE Alu -21 291 1 365 273 39 93 chr6 46716278 46716372 -142563182 - MIR SINE MIR -107 155 57 241 191 63 0 chr6 46716375 46716438 -142563116 - MIR SINE MIR -1 261 195 518 269 143 16 chr6 46716458 46716640 -142562914 + MER3 DNA MER1_type 1 205 -4 376 291 47 31 chr6 46718339 46718466 -142561088 + L2 LINE L2 3138 3266 -6 25 0 0 0 chr6 46718540 46718565 -142560989 + AT_rich Low_complexity Low_complexity 1 25 0 1285 232 92 33 chr6 46718719 46718871 -142560683 + L1ME3 LINE L1 5393 5535 -627 1893 143 30 20 chr6 46718871 46719172 -142560382 + AluSx SINE Alu 1 304 -8 1285 232 92 33 chr6 46719172 46719301 -142560253 + L1ME3 LINE L1 5535 5655 -507 1831 143 0 54 chr6 46719301 46719615 -142559939 + AluJo SINE Alu 8 304 -8 1285 232 92 33 chr6 46719615 46719755 -142559799 + L1ME3 LINE L1 5655 5840 -322 417 149 92 0 chr6 46719758 46719845 -142559709 - MLT1G1 LTR MaLR -2 593 499 634 331 69 22 chr6 46719845 46720162 -142559392 - HERVL LTR ERVL -2345 3309 2978 1252 37 0 12 chr6 46720179 46720343 -142559211 + L1PA6 LINE L1 5993 6154 0 268 319 25 25 chr6 46720350 46720469 -142559085 - HERVL LTR ERVL -2541 2944 2826 1348 330 73 30 chr6 46720474 46721618 -142557936 - HERVL LTR ERVL -3133 2631 1302 1117 353 76 45 chr6 46721664 46722065 -142557489 - HERVL LTR ERVL -3827 1169 782 800 212 54 59 chr6 46722065 46722287 -142557267 + MER58A DNA MER1_type 1 221 -3 1117 353 76 45 chr6 46722287 46722998 -142556556 - HERVL LTR ERVL -4214 782 22 720 299 44 22 chr6 46723040 46723314 -142556240 - LTR16C LTR ERVL -31 460 181 784 279 175 12 chr6 46724407 46725080 -142554474 + L2 LINE L2 2504 3309 -4 1884 146 20 3 chr6 46725081 46725383 -142554171 + AluJb SINE Alu 1 307 -5 28 29 0 0 chr6 46725464 46725499 -142554055 + AT_rich Low_complexity Low_complexity 1 35 0 539 182 27 27 chr6 46725500 46725648 -142553906 - L1MC4 LINE L1 0 8042 7895 2008 134 0 3 chr6 46725844 46726142 -142553412 - AluJb SINE Alu -15 297 1 1990 161 64 22 chr6 46726142 46726502 -142553052 - THE1C LTR MaLR 0 375 1 1485 248 49 97 chr6 46726543 46727257 -142552297 - L1MC4a LINE L1 -1874 5934 5255 394 273 63 98 chr6 46727267 46727472 -142552082 - L1MC4a LINE L1 -907 5239 5042 380 141 0 14 chr6 46727472 46727543 -142552011 + (TTC)n Simple_repeat Simple_repeat 2 71 0 926 144 0 0 chr6 46727548 46727680 -142551874 - FLAM_C SINE Alu -1 132 1 1066 69 29 6 chr6 46727698 46727717 -142551837 + (TTTC)n Simple_repeat Simple_repeat 1 197 0 1066 69 29 6 chr6 46727717 46727891 -142551663 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 442 245 37 43 chr6 46728018 46728181 -142551373 - L1MC5 LINE L1 -55 7906 7745 436 289 53 79 chr6 46728177 46728495 -142551059 - L1MC4a LINE L1 -1110 5036 4727 * 277 302 28 9 chr6 46728662 46728768 -142550786 + MIR SINE MIR 20 127 -81 327 291 111 0 chr6 46729215 46729332 -142550222 + MIR SINE MIR 20 149 -59 305 247 81 41 chr6 46730803 46730923 -142548631 + MIR SINE MIR 38 162 -63 636 287 24 40 chr6 46731050 46731301 -142548253 - L2 LINE L2 -2 3311 3065 538 260 98 12 chr6 46731294 46731467 -142548087 - MIR SINE MIR -44 218 31 * 1950 129 30 0 chr6 46731567 46731870 -142547684 - AluJo SINE Alu 0 312 1 1712 183 7 0 chr6 46732257 46732546 -142547008 - AluSx SINE Alu -21 291 1 242 274 57 97 chr6 46732708 46732883 -142546671 + L2 LINE L2 3008 3175 -97 777 266 23 0 chr6 46732933 46733106 -142546448 + MER91A DNA MER1_type 20 196 0 216 208 21 0 chr6 46733106 46733153 -142546401 + L2 LINE L2 3214 3261 -11 501 270 201 0 chr6 46733206 46733380 -142546174 + MER63A DNA MER1_type 2 210 0 417 39 0 0 chr6 46733427 46733478 -142546076 + (GA)n Simple_repeat Simple_repeat 2 52 0 180 305 105 72 chr6 46734098 46734136 -142545418 - L2 LINE L2 -143 3129 3094 1722 217 100 0 chr6 46734136 46734496 -142545058 - MSTD LTR MaLR 0 396 1 180 305 105 72 chr6 46734496 46734762 -142544792 - L2 LINE L2 -178 3094 2815 313 228 118 46 chr6 46735059 46735323 -142544231 - L2 LINE L2 -256 3057 2721 2157 98 37 3 chr6 46735976 46736272 -142543282 + AluSq SINE Alu 1 306 -7 436 200 104 16 chr6 46736272 46736397 -142543157 - LTR37B LTR ERV1 -90 378 243 288 77 0 0 chr6 46736521 46736560 -142542994 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 1855 89 0 4 chr6 46736574 46736821 -142542733 - AluSq SINE Alu -67 246 1 1652 203 0 0 chr6 46737040 46737336 -142542218 - AluJo SINE Alu -14 298 3 486 269 32 45 chr6 46737343 46737374 -142542180 - MER31-int LTR ERV1 -835 4101 4071 605 211 9 0 chr6 46737374 46737483 -142542071 + MER81 DNA DNA 3 112 -2 486 269 32 45 chr6 46737483 46737867 -142541687 - MER31-int LTR ERV1 -865 4071 3657 1304 128 0 37 chr6 46737869 46738087 -142541467 - AluJb SINE Alu -16 296 87 418 271 32 95 chr6 46738091 46738176 -142541378 - MER31-int LTR ERV1 -1271 3665 3576 1888 98 0 119 chr6 46738176 46738512 -142541042 + AluSx SINE Alu 1 296 -16 418 271 32 95 chr6 46738512 46738710 -142540844 - MER31-int LTR ERV1 -1360 3576 3400 1765 144 7 11 chr6 46739087 46739372 -142540182 + AluJb SINE Alu 21 304 -8 344 296 0 66 chr6 46739372 46739524 -142540030 - MER31-int LTR ERV1 -1871 3065 2924 253 297 33 78 chr6 46739602 46739935 -142539619 - MER31-int LTR ERV1 -2145 2791 2474 2117 98 9 22 chr6 46740074 46740389 -142539165 - AluSq SINE Alu -2 311 1 1953 128 0 3 chr6 46740705 46740995 -142538559 - AluSx SINE Alu -23 289 1 2800 167 18 12 chr6 46741167 46741659 -142537895 - L1MB3 LINE L1 -11 6172 5678 682 101 0 46 chr6 46741671 46741780 -142537774 - AluSg/x SINE Alu -2 307 204 1962 114 0 18 chr6 46741780 46742060 -142537494 - AluSx SINE Alu -35 277 3 271 309 0 36 chr6 46742117 46742311 -142537243 - MER31-int LTR ERV1 -3050 1886 1700 1179 119 0 0 chr6 46742897 46743057 -142536497 + AluSg/x SINE Alu 137 296 -14 1933 120 0 0 chr6 46743159 46743425 -142536129 + AluSx SINE Alu 1 266 -46 2210 99 0 0 chr6 46743509 46743803 -142535751 - AluSx SINE Alu -18 294 1 227 175 75 50 chr6 46744250 46744330 -142535224 - LTR37A LTR ERV1 -9 417 336 2199 112 0 0 chr6 46744331 46744634 -142534920 - AluSq SINE Alu -10 303 1 610 284 90 32 chr6 46745969 46746314 -142533240 + L2 LINE L2 2870 3234 -79 314 267 67 9 chr6 46746383 46746488 -142533066 + MIR SINE MIR 83 193 -69 288 315 53 7 chr6 46746866 46747000 -142532554 + MIR SINE MIR 13 145 -63 2461 78 0 0 chr6 46747326 46747635 -142531919 + AluSx SINE Alu 1 309 -3 330 312 81 45 chr6 46747938 46748159 -142531395 - MIR SINE MIR -6 256 28 192 260 14 27 chr6 46748228 46748301 -142531253 - L2 LINE L2 -219 3053 2982 433 267 67 0 chr6 46749764 46749899 -142529655 + MIR SINE MIR 98 241 -21 1468 70 57 70 chr6 46750050 46750294 -142529260 - AluY SINE Alu -17 294 54 999 237 129 38 chr6 46750580 46751095 -142528459 - L2 LINE L2 0 3313 2768 344 220 40 30 chr6 46751814 46751914 -142527640 - MIR SINE MIR -90 172 72 255 61 0 0 chr6 46751943 46751976 -142527578 + (CA)n Simple_repeat Simple_repeat 2 34 0 231 317 111 6 chr6 46752027 46752207 -142527347 - L2 LINE L2 -185 3087 2889 814 273 51 0 chr6 46754326 46754542 -142525012 + MIR SINE MIR 35 261 -1 2378 82 0 0 chr6 46754692 46754998 -142524556 + AluY SINE Alu 1 306 -5 233 194 134 15 chr6 46755138 46755205 -142524349 + MER5A DNA MER1_type 5 79 -110 1867 130 39 0 chr6 46755269 46755595 -142523959 - AluSx SINE Alu 0 312 1 528 16 0 0 chr6 46755776 46755837 -142523717 + (CCAA)n Simple_repeat Simple_repeat 2 62 0 240 175 0 63 chr6 46756141 46756204 -142523350 - MIR SINE MIR -114 148 90 1034 113 0 31 chr6 46756315 46756474 -142523080 - AluSq SINE Alu -19 294 141 400 297 38 12 chr6 46756488 46756659 -142522895 - MIR SINE MIR -65 143 16 193 146 42 21 chr6 46756789 46756837 -142522717 - L2 LINE L2 -196 3076 3028 2143 109 3 0 chr6 46757387 46757680 -142521874 - AluSg SINE Alu -15 295 2 789 299 44 66 chr6 46757688 46757941 -142521613 + L1MC4a LINE L1 5592 5849 -1959 2077 134 0 0 chr6 46757941 46758239 -142521315 - AluSx SINE Alu -14 298 1 789 299 44 66 chr6 46758239 46758578 -142520976 + L1MC4a LINE L1 5849 6171 -1637 359 295 189 40 chr6 46759293 46759520 -142520034 + MIR SINE MIR 2 262 0 249 272 123 26 chr6 46760439 46760553 -142519001 - L1ME4a LINE L1 -32 6089 5965 2367 96 0 0 chr6 46760609 46760921 -142518633 - AluSx SINE Alu 0 312 1 279 224 86 138 chr6 46760926 46761252 -142518302 + L1ME4a LINE L1 5598 5906 -215 412 130 65 26 chr6 46761254 46761331 -142518223 + MER116 DNA Mariner 1 80 0 23 33 0 0 chr6 46761897 46761927 -142517627 + GC_rich Low_complexity Low_complexity 1 30 0 296 271 111 29 chr6 46762052 46762191 -142517363 + MIR SINE MIR 19 164 -61 342 139 0 0 chr6 46762279 46762351 -142517203 + (CA)n Simple_repeat Simple_repeat 2 73 0 237 269 278 14 chr6 46762355 46762571 -142516983 + L2 LINE L2 3022 3294 -19 320 293 197 13 chr6 46762653 46762957 -142516597 + L2 LINE L2 2883 3242 -30 323 226 49 79 chr6 46763483 46763647 -142515907 + L1ME4a LINE L1 5963 6121 0 1514 195 45 0 chr6 46764328 46764615 -142514939 - AluJb SINE Alu -12 300 1 262 354 37 37 chr6 46764818 46764979 -142514575 + L3 LINE CR1 1409 1569 -8 2151 81 3 0 chr6 46765016 46765328 -142514226 - AluY SINE Alu 0 313 1 558 0 0 0 chr6 46765452 46765514 -142514040 + (GA)n Simple_repeat Simple_repeat 2 63 0 660 294 80 0 chr6 46766225 46766426 -142513128 - MIR SINE MIR 0 262 46 688 204 99 0 chr6 46767252 46767414 -142512140 + MER5B DNA MER1_type 1 178 0 204 231 0 0 chr6 46767525 46767564 -142511990 + (TATG)n Simple_repeat Simple_repeat 2 40 0 281 192 0 0 chr6 46767697 46767749 -142511805 - MIR SINE MIR -122 140 89 808 149 90 0 chr6 46767749 46767908 -142511646 + AluSg/x SINE Alu 137 307 0 214 245 0 0 chr6 46767908 46767957 -142511597 - MIR SINE MIR -167 95 47 356 336 16 0 chr6 46769224 46769349 -142510205 - MIR3 SINE MIR -24 184 58 634 232 119 41 chr6 46769392 46769586 -142509968 + MIR SINE MIR 51 259 -3 431 271 31 0 chr6 46770184 46770313 -142509241 + MER103 DNA DNA 17 149 -17 1241 238 85 36 chr6 46771221 46771796 -142507758 + L2 LINE L2 2675 3278 -35 496 286 25 12 chr6 46772375 46772536 -142507018 - MIR3 SINE MIR -15 193 31 201 148 49 0 chr6 46775004 46775055 -142504499 - MIR3 SINE MIR -42 166 111 982 235 184 11 chr6 46777819 46778452 -142501102 + L2 LINE L2 2460 3179 -134 639 227 43 0 chr6 46778468 46778609 -142500945 + MIR SINE MIR 40 186 -76 217 250 0 0 chr6 46778649 46778697 -142500857 + MIR3 SINE MIR 159 206 -2 337 269 98 49 chr6 46779474 46779639 -142499915 + MIR SINE MIR 45 216 -46 779 195 30 20 chr6 46779807 46780007 -142499547 + L1MC5 LINE L1 7238 7439 -522 349 234 97 48 chr6 46780020 46780083 -142499471 + MER5A DNA MER1_type 30 88 -101 1783 179 3 0 chr6 46780083 46780374 -142499180 - AluJb SINE Alu -20 292 1 349 234 97 48 chr6 46780374 46780434 -142499120 + MER5A DNA MER1_type 88 159 -30 871 197 52 30 chr6 46780445 46780714 -142498840 + L1MC5 LINE L1 7500 7774 -187 470 142 47 57 chr6 46780721 46780827 -142498727 + FLAM_C SINE Alu 39 143 0 392 224 40 8 chr6 46780852 46780977 -142498577 + L1MC5 LINE L1 7797 7925 -36 417 263 45 8 chr6 46781101 46781234 -142498320 - MER5A DNA MER1_type -3 186 49 534 257 114 14 chr6 46781563 46781773 -142497781 + MLT1J2 LTR MaLR 202 432 -18 2176 87 0 17 chr6 46782646 46782983 -142496571 + AluSx SINE Alu 1 332 0 678 288 6 6 chr6 46783683 46783860 -142495694 - MIR3 SINE MIR -15 193 17 695 269 125 9 chr6 46784301 46784517 -142495037 - MIR SINE MIR -6 256 16 266 253 96 101 chr6 46785235 46785413 -142494141 + MER5B DNA MER1_type 1 177 -1 270 191 16 32 chr6 46785509 46785572 -142493982 + MER5A DNA MER1_type 10 71 -118 201 322 136 59 chr6 46785645 46785763 -142493791 + MER5A DNA MER1_type 63 189 0 588 242 16 0 chr6 46785772 46785896 -142493658 + MIR3 SINE MIR 35 160 -48 373 271 45 32 chr6 46785918 46786073 -142493481 + MER20B DNA MER1_type 7 163 -620 218 219 0 123 chr6 46786238 46786311 -142493243 - MIR SINE MIR -82 180 117 648 190 83 58 chr6 46786498 46786650 -142492904 + L2 LINE L2 2919 3066 -247 189 0 0 0 chr6 46786650 46786671 -142492883 + (TG)n Simple_repeat Simple_repeat 2 22 0 648 190 83 58 chr6 46786671 46786816 -142492738 + L2 LINE L2 3066 3313 0 440 289 44 0 chr6 46786909 46787044 -142492510 + MIR SINE MIR 31 171 -91 844 197 128 0 chr6 46788057 46788245 -142491309 + MER20B DNA MER1_type 1 212 -7 376 300 22 0 chr6 46788532 46788658 -142490896 - MIR SINE MIR -78 130 25 867 208 25 25 chr6 46789228 46789425 -142490129 + MIR SINE MIR 60 256 -6 1485 150 115 0 chr6 46789427 46789687 -142489867 - AluJo SINE Alu -22 290 1 252 276 63 39 chr6 46790610 46790737 -142488817 - L2 LINE L2 -23 3290 3161 1688 146 10 45 chr6 46791063 46791371 -142488183 + AluSx SINE Alu 1 297 -15 428 316 191 16 chr6 46791529 46791975 -142487579 - L2 LINE L2 -555 2759 2236 201 260 104 26 chr6 46791986 46792063 -142487491 - L3 LINE CR1 -160 1417 1335 201 361 96 24 chr6 46792480 46792646 -142486908 - L2 LINE L2 -6 3266 3089 409 195 0 0 chr6 46792860 46792937 -142486617 - MIR SINE MIR -143 119 43 1758 119 93 4 chr6 46793115 46793384 -142486170 + AluJo SINE Alu 8 300 -12 591 174 0 0 chr6 46793390 46793505 -142486049 + (CA)n Simple_repeat Simple_repeat 2 116 0 390 314 29 36 chr6 46793815 46793955 -142485599 + MIR SINE MIR 32 170 -92 246 293 5 47 chr6 46794388 46794459 -142485095 + L1MC4 LINE L1 7695 7767 -275 2387 89 0 0 chr6 46794459 46794763 -142484791 + AluSx SINE Alu 1 304 -8 246 293 5 47 chr6 46794763 46794882 -142484672 + L1MC4 LINE L1 7767 7877 -165 2079 96 4 4 chr6 46797989 46798294 -142481260 - AluSx SINE Alu 0 305 1 347 230 71 9 chr6 46798508 46798621 -142480933 - MIR SINE MIR -59 149 30 317 263 190 29 chr6 46798838 46798975 -142480579 - MER5B DNA MER1_type -19 159 1 757 215 23 17 chr6 46798993 46799170 -142480384 - MER5B DNA MER1_type 0 178 1 2428 84 10 0 chr6 46799361 46799670 -142479884 - AluSx SINE Alu 0 312 1 288 330 117 29 chr6 46799934 46800140 -142479414 + MIR SINE MIR 8 231 -31 533 219 8 8 chr6 46800216 46800335 -142479219 + L2 LINE L2 3193 3311 -2 268 329 34 53 chr6 46800338 46800492 -142479062 - MIR SINE MIR -57 151 33 323 281 42 72 chr6 46801429 46801596 -142477958 + MIR SINE MIR 90 251 -11 258 364 64 37 chr6 46802361 46802419 -142477135 + L2 LINE L2 3076 3131 -141 1012 256 11 30 chr6 46802419 46802685 -142476869 + MIR SINE MIR 1 261 -1 258 364 64 37 chr6 46802685 46802813 -142476741 + L2 LINE L2 3131 3267 -5 181 350 156 27 chr6 46803596 46803782 -142475772 + L2 LINE L2 3095 3304 -9 1426 129 56 141 chr6 46803974 46804315 -142475239 - AluJo SINE Alu 0 312 1 425 333 8 0 chr6 46804583 46804715 -142474839 + L2 LINE L2 3134 3266 -6 467 291 20 7 chr6 46804767 46804918 -142474636 - MIR SINE MIR -71 191 39 1215 154 0 64 chr6 46805005 46805238 -142474316 + AluJb SINE Alu 85 302 -10 1742 146 10 26 chr6 46805241 46805543 -142474011 + AluJb SINE Alu 2 298 -14 411 429 6 0 chr6 46806248 46806430 -142473124 + L3 LINE CR1 1345 1527 -50 463 252 17 0 chr6 46806447 46806562 -142472992 + MIR SINE MIR 35 151 -57 979 241 54 62 chr6 46806663 46807049 -142472505 + L2 LINE L2 2931 3313 0 324 0 0 0 chr6 46808905 46808941 -142470613 + (CA)n Simple_repeat Simple_repeat 1 36 0 544 290 80 0 chr6 46809199 46809361 -142470193 - MIR3 SINE MIR -15 193 19 817 274 63 8 chr6 46810255 46810499 -142469055 + MIR SINE MIR 1 251 -11 266 295 31 47 chr6 46810673 46810802 -142468752 - MIR SINE MIR -56 206 80 2324 68 7 0 chr6 46811107 46811401 -142468153 - AluY SINE Alu -15 296 1 790 273 36 0 chr6 46811535 46811729 -142467825 + MIR SINE MIR 11 211 -51 207 100 0 0 chr6 46811872 46811902 -142467652 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 579 287 91 35 chr6 46811902 46812132 -142467422 - MIR SINE MIR -11 251 9 465 255 235 0 chr6 46812456 46812656 -142466898 - MIR SINE MIR 0 262 16 597 200 56 0 chr6 46812826 46812982 -142466572 - MER45A DNA AcHobo -5 173 1 405 331 140 0 chr6 46813045 46813202 -142466352 + MIR3 SINE MIR 5 183 -25 2069 100 38 0 chr6 46813661 46813950 -142465604 + AluSq SINE Alu 1 300 -13 477 0 0 0 chr6 46813955 46814008 -142465546 + (CA)n Simple_repeat Simple_repeat 2 54 0 345 346 101 21 chr6 46814020 46814208 -142465346 + MIR SINE MIR 35 237 -25 415 205 0 0 chr6 46814238 46814316 -142465238 + MER116 DNA Mariner 2 79 -1 1554 94 5 0 chr6 46814316 46814529 -142465025 + L1PA13 LINE L1 5950 6163 0 833 188 29 0 chr6 46814577 46814630 -142464924 - MIR SINE MIR -57 205 155 1654 158 0 56 chr6 46814630 46814952 -142464602 - AluJo SINE Alu -8 304 1 833 188 29 0 chr6 46814952 46815068 -142464486 - MIR SINE MIR -107 155 31 1726 155 46 16 chr6 46815798 46816101 -142463453 + AluJb SINE Alu 1 312 0 411 184 48 0 chr6 46816458 46816583 -142462971 + MER96B DNA MER1_type? 44 174 -243 348 239 212 0 chr6 46816583 46816696 -142462858 - MIR SINE MIR -122 140 4 729 192 0 8 chr6 46816726 46816856 -142462698 + FLAM_A SINE Alu 1 129 -4 2284 98 0 9 chr6 46816869 46817184 -142462370 + AluSx SINE Alu 1 312 0 239 210 25 0 chr6 46817198 46817279 -142462275 + L1ME4a LINE L1 6038 6120 -1 480 235 174 19 chr6 46817732 46818089 -142461465 + L1ME4a LINE L1 5680 6120 -1 292 280 64 25 chr6 46818450 46818607 -142460947 + L2 LINE L2 2843 3005 -308 410 259 17 17 chr6 46818610 46818726 -142460828 + MER20B DNA MER1_type 668 783 0 206 391 0 0 chr6 46818732 46818801 -142460753 + L2 LINE L2 3117 3185 -87 1656 145 7 53 chr6 46819168 46819472 -142460082 - AluJb SINE Alu -9 303 14 243 203 16 16 chr6 46820674 46820738 -142458816 - MIR SINE MIR -36 226 163 645 218 17 145 chr6 46821159 46821448 -142458106 + MIR SINE MIR 1 252 -10 911 146 118 2 chr6 46821473 46821729 -142457825 + Charlie1b DNA MER1_type 1 327 -196 601 118 0 82 chr6 46821729 46821839 -142457715 - AluSg SINE Alu -6 303 203 1181 42 0 7 chr6 46821839 46821981 -142457573 - AluSg SINE Alu -169 141 1 279 110 29 176 chr6 46821986 46822122 -142457432 + Charlie1b DNA MER1_type 319 434 -89 642 292 79 15 chr6 46822346 46822548 -142457006 + MIR SINE MIR 22 236 -26 345 271 239 7 chr6 46822893 46823048 -142456506 + MIR3 SINE MIR 15 205 -3 313 291 64 0 chr6 46824054 46824164 -142455390 + MIR SINE MIR 57 173 -89 200 91 30 0 chr6 46824282 46824315 -142455239 - MER5A DNA MER1_type -155 34 1 237 356 6 34 chr6 46824624 46824801 -142454753 + CT-rich Low_complexity Low_complexity 2 173 0 180 143 24 24 chr6 46825036 46825078 -142454476 - L2 LINE L2 -2855 459 418 245 311 0 47 chr6 46825299 46825405 -142454149 + GA-rich Low_complexity Low_complexity 4 104 0 712 200 109 29 chr6 46825968 46826143 -142453411 + MER5A DNA MER1_type 1 189 0 1961 163 62 54 chr6 46826212 46826303 -142453251 + MLT1B LTR MaLR 1 90 -300 2329 92 0 6 chr6 46826303 46826617 -142452937 - AluSx SINE Alu 0 312 1 1961 163 62 54 chr6 46826617 46826912 -142452642 + MLT1B LTR MaLR 90 390 0 2118 102 0 0 chr6 46827078 46827387 -142452167 - AluSx SINE Alu 0 309 1 193 273 15 45 chr6 46827405 46827471 -142452083 + L2 LINE L2 2996 3059 -213 281 187 40 13 chr6 46827808 46827883 -142451671 + MER69 DNA AcHobo 2448 2524 -2 1950 101 25 7 chr6 46828045 46828342 -142451212 - AluSx SINE Alu 0 304 3 618 247 13 19 chr6 46828492 46828650 -142450904 - LTR24B LTR ERV1 -7 569 413 472 174 25 118 chr6 46828913 46829074 -142450480 + MIR3 SINE MIR 34 179 -29 510 243 65 22 chr6 46829739 46829924 -142449630 + L1ME3 LINE L1 5969 6161 -1 254 292 51 69 chr6 46831411 46831627 -142447927 + L2 LINE L2 2900 3111 -161 1590 249 90 35 chr6 46831703 46832254 -142447300 + MLT1E LTR MaLR 6 593 0 813 130 91 13 chr6 46832380 46832534 -142447020 - MER5A DNA MER1_type -23 166 1 2119 133 20 46 chr6 46832739 46833076 -142446478 + L1MB2 LINE L1 5790 6117 -54 2461 68 0 0 chr6 46833076 46833383 -142446171 + AluSc SINE Alu 1 307 -2 2119 133 20 46 chr6 46833383 46833436 -142446118 + L1MB2 LINE L1 6117 6170 -1 921 199 6 0 chr6 46833440 46833616 -142445938 + FRAM SINE Alu 1 169 -7 204 250 0 0 chr6 46833616 46833660 -142445894 + L2 LINE L2 3187 3230 -83 1741 135 10 28 chr6 46833905 46834193 -142445361 + AluSx SINE Alu 1 283 -29 255 311 62 85 chr6 46834516 46834693 -142444861 + L2 LINE L2 3097 3269 -3 212 328 0 0 chr6 46834665 46834723 -142444831 - MIR SINE MIR -1 261 204 * 872 153 35 20 chr6 46834741 46834944 -142444610 + LTR37A LTR ERV1 221 426 0 610 220 8 8 chr6 46834950 46835082 -142444472 + MER5B DNA MER1_type 46 177 -1 811 229 105 5 chr6 46835115 46835325 -142444229 - MIR SINE MIR -6 256 26 1177 254 93 21 chr6 46837376 46837797 -142441757 + LTR33 LTR ERVL 69 519 -2 1000 254 12 8 chr6 46838358 46838602 -142440952 + MIR SINE MIR 2 246 -16 2186 96 3 13 chr6 46839220 46839532 -142440022 - AluSq SINE Alu -4 309 1 866 235 63 23 chr6 46839857 46840078 -142439476 - MIR SINE MIR -1 261 32 448 116 23 0 chr6 46840335 46840421 -142439133 + GA-rich Low_complexity Low_complexity 2 89 0 1763 134 22 0 chr6 46840468 46840743 -142438811 + AluJo SINE Alu 32 312 0 230 255 160 57 chr6 46840790 46840896 -142438658 - MIR3 SINE MIR -18 190 74 319 313 18 48 chr6 46841050 46841216 -142438338 - MIR SINE MIR -46 216 56 234 274 105 0 chr6 46841813 46841908 -142437646 - MIR3 SINE MIR -19 189 85 273 255 170 11 chr6 46842520 46842614 -142436940 - MIR SINE MIR 0 262 154 2225 109 0 0 chr6 46842959 46843262 -142436292 + AluSx SINE Alu 1 303 -9 364 233 39 39 chr6 46843278 46843407 -142436147 + MIR3 SINE MIR 8 136 -72 227 284 123 31 chr6 46843550 46843712 -142435842 - MIR SINE MIR 0 262 86 1135 296 30 30 chr6 46844217 46844386 -142435168 + L2 LINE L2 2578 2745 -568 2111 123 0 0 chr6 46844386 46844686 -142434868 + AluSx SINE Alu 1 300 -12 1135 296 30 30 chr6 46844686 46844964 -142434590 + L2 LINE L2 2745 3032 -281 395 283 114 5 chr6 46845051 46845234 -142434320 - MIR SINE MIR -46 216 18 836 341 169 14 chr6 46845237 46845733 -142433821 + L3 LINE CR1 444 1016 -561 633 123 0 53 chr6 46845906 46846020 -142433534 + MIR SINE MIR 117 224 -38 2111 102 30 0 chr6 46846022 46846325 -142433229 + AluSx SINE Alu 1 312 0 1771 135 151 6 chr6 46846482 46846801 -142432753 + MLT1A1 LTR MaLR 1 365 0 411 267 19 0 chr6 46847231 46847362 -142432192 - MIR SINE MIR -62 146 18 1178 189 5 0 chr6 46847917 46848129 -142431425 - AluSg/x SINE Alu -13 297 85 2052 129 7 0 chr6 46848181 46848483 -142431071 + AluSq SINE Alu 1 304 -9 184 234 56 75 chr6 46848538 46848645 -142430909 + MIR3 SINE MIR 104 208 0 598 286 11 26 chr6 46848741 46848930 -142430624 + LTR33 LTR ERVL 1 186 -335 290 297 14 0 chr6 46849223 46849297 -142430257 + MIR3 SINE MIR 128 202 -6 648 271 58 21 chr6 46849665 46849905 -142429649 - MIR SINE MIR -4 258 4 2148 114 10 0 chr6 46850229 46850537 -142429017 - AluSx SINE Alu -1 311 1 1416 79 0 0 chr6 46851470 46851648 -142427906 - AluSg/x SINE Alu -3 309 132 922 254 131 62 chr6 46851656 46851795 -142427759 - L2 LINE L2 0 3313 3185 1561 175 10 32 chr6 46851795 46852104 -142427450 + AluJo SINE Alu 1 302 -10 922 254 131 62 chr6 46852104 46852596 -142426958 - L2 LINE L2 -128 3185 2651 312 296 94 19 chr6 46853725 46853884 -142425670 - MIR SINE MIR -70 192 22 223 200 0 0 chr6 46854077 46854117 -142425437 + MIR SINE MIR 208 247 -15 181 293 35 0 chr6 46854354 46854412 -142425142 - L2 LINE L2 -9 3304 3245 349 289 74 34 chr6 46854895 46855044 -142424510 - MIR SINE MIR 0 262 108 283 191 48 0 chr6 46855150 46855213 -142424341 + MIR3 SINE MIR 93 158 -50 374 304 196 12 chr6 46855221 46855543 -142424011 + LTR16C LTR ERVL 11 391 -100 1840 109 4 0 chr6 46855802 46856058 -142423496 + AluSx SINE Alu 1 257 -55 181 83 56 0 chr6 46856065 46856101 -142423453 + (CAA)n Simple_repeat Simple_repeat 2 39 0 231 302 82 44 chr6 46856104 46856263 -142423291 - MIR3 SINE MIR -17 191 27 383 289 44 18 chr6 46857066 46857180 -142422374 - MIR3 SINE MIR -4 204 88 264 271 56 93 chr6 46857975 46858082 -142421472 + MIR SINE MIR 91 193 -69 683 139 0 88 chr6 46859328 46859465 -142420089 + FLAM_A SINE Alu 18 142 0 748 285 45 0 chr6 46859944 46860165 -142419389 + MIR SINE MIR 18 248 -14 227 224 41 0 chr6 46860133 46860182 -142419372 + L2 LINE L2 3262 3312 -1 * 2023 141 0 3 chr6 46860351 46860663 -142418891 + AluJb SINE Alu 1 311 -1 2296 99 0 0 chr6 46860668 46860970 -142418584 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr6 46860988 46861009 -142418545 + AT_rich Low_complexity Low_complexity 1 21 0 280 354 126 15 chr6 46861121 46861327 -142418227 - MIR SINE MIR -1 261 33 264 256 204 15 chr6 46861786 46861923 -142417631 + MIR SINE MIR 20 182 -80 474 282 102 45 chr6 46861937 46862182 -142417372 + L2 LINE L2 2444 2702 -612 2211 114 0 0 chr6 46862182 46862490 -142417064 - AluSx SINE Alu -2 310 3 1530 104 9 0 chr6 46862492 46862703 -142416851 - AluSg/x SINE Alu -11 301 89 650 98 0 0 chr6 46862703 46862795 -142416759 + AluSg/x SINE Alu 208 299 -11 305 299 14 55 chr6 46862929 46863093 -142416461 - MIR SINE MIR -65 143 39 822 267 129 30 chr6 46863510 46863881 -142415673 + MLT1L LTR MaLR 190 597 -18 395 205 2 0 chr6 46864337 46864426 -142415128 + MIR SINE MIR 75 150 -58 2027 240 55 43 chr6 46864457 46865041 -142414513 + MLT1E LTR MaLR 3 593 0 1456 152 18 111 chr6 46865078 46865420 -142414134 + AluJo SINE Alu 1 310 -2 279 79 0 0 chr6 46865420 46865458 -142414096 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 2110 121 0 0 chr6 46865511 46865808 -142413746 + AluSx SINE Alu 1 297 -15 208 216 0 0 chr6 46865848 46865885 -142413669 + L2 LINE L2 3218 3254 -18 * 226 213 0 43 chr6 46865852 46865899 -142413655 + MIR SINE MIR 218 262 0 2051 101 3 29 chr6 46866651 46866959 -142412595 + AluSq SINE Alu 1 300 -13 646 244 128 0 chr6 46867063 46867243 -142412311 - MIR SINE MIR -53 209 7 200 167 21 0 chr6 46867855 46867903 -142411651 + CT-rich Low_complexity Low_complexity 2 50 0 214 129 0 0 chr6 46868270 46868301 -142411253 - L2 LINE L2 -18 3295 3265 258 304 156 15 chr6 46868363 46868498 -142411056 - MIR SINE MIR -21 241 88 226 258 10 88 chr6 46870628 46870822 -142408732 + G-rich Low_complexity Low_complexity 1 179 0 25 90 0 0 chr6 46870957 46871024 -142408530 + GC_rich Low_complexity Low_complexity 1 67 0 33 25 0 0 chr6 46871175 46871215 -142408339 + GC_rich Low_complexity Low_complexity 1 40 0 249 163 0 0 chr6 46871227 46871276 -142408278 + (TG)n Simple_repeat Simple_repeat 1 49 0 272 271 0 0 chr6 46872580 46872650 -142406904 - L2 LINE L2 -1 3271 3202 399 171 11 11 chr6 46872719 46872807 -142406747 - L1MB7 LINE L1 -16 6168 6081 286 89 22 0 chr6 46872847 46872892 -142406662 + MADE1 DNA Mariner 35 80 0 427 316 15 0 chr6 46872892 46873025 -142406529 - MIR SINE MIR -111 151 17 462 114 0 0 chr6 46873278 46873348 -142406206 + (A)n Simple_repeat Simple_repeat 1 70 0 241 344 55 8 chr6 46873351 46873479 -142406075 - L2 LINE L2 -17 3255 3122 2327 88 0 7 chr6 46873532 46873839 -142405715 + AluSx SINE Alu 1 305 -7 378 145 13 40 chr6 46873952 46874026 -142405528 - LTR16C LTR ERVL 0 491 420 919 199 42 0 chr6 46874026 46874217 -142405337 - MLT1A1 LTR MaLR 0 365 167 270 114 11 159 chr6 46874222 46874310 -142405244 - MLT1A1 LTR MaLR -176 189 115 * 1366 261 41 31 chr6 46874304 46874695 -142404859 - LTR16C LTR ERVL -96 395 1 2120 108 0 10 chr6 46874980 46875278 -142404276 + AluSx SINE Alu 1 351 0 331 36 54 0 chr6 46875278 46875334 -142404220 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 593 310 11 22 chr6 46875970 46876154 -142403400 - MER91A DNA MER1_type -14 182 1 192 296 114 34 chr6 46876254 46876342 -142403212 - MIR3 SINE MIR -27 181 87 884 201 201 9 chr6 46876804 46877305 -142402249 + L2 LINE L2 2678 3287 -26 2393 57 0 0 chr6 46877623 46877942 -142401612 - AluY SINE Alu 0 319 1 269 0 0 109 chr6 46877942 46877988 -142401566 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2253 92 3 0 chr6 46877988 46878271 -142401283 - AluY SINE Alu -27 284 1 892 132 0 0 chr6 46878295 46878416 -142401138 - FLAM_C SINE Alu -12 121 1 378 211 28 55 chr6 46878617 46878726 -142400828 - MIR SINE MIR -109 153 48 335 284 44 15 chr6 46879007 46879142 -142400412 - MIR3 SINE MIR -1 207 68 203 250 0 0 chr6 46879727 46879775 -142399779 - L3b LINE CR1 -240 1343 1296 244 328 57 8 chr6 46880695 46880817 -142398737 - MIR3 SINE MIR -2 206 79 243 261 26 164 chr6 46881734 46881929 -142397625 + MIR SINE MIR 20 187 -75 820 257 59 0 chr6 46883423 46883645 -142395909 - MIR SINE MIR 0 262 28 281 211 122 0 chr6 46884022 46884112 -142395442 + MER5A DNA MER1_type 9 109 -80 1864 126 63 39 chr6 46885378 46885742 -142393812 + THE1C LTR MaLR 3 375 0 396 276 37 8 chr6 46888014 46888148 -142391406 - L1ME4a LINE L1 -1 6120 5983 575 211 48 7 chr6 46888212 46888359 -142391195 - MER117 DNA MER1_type -43 154 2 612 191 52 0 chr6 46888509 46888624 -142390930 + AluJo SINE Alu 2 122 -190 918 117 8 0 chr6 46888624 46888752 -142390802 - AluJo/FLAM SINE Alu -183 129 1 860 209 6 12 chr6 46888756 46888928 -142390626 + AluJo SINE Alu 120 290 -22 2333 87 7 19 chr6 46889085 46889394 -142390160 + AluSg SINE Alu 1 305 -5 2445 92 0 0 chr6 46890282 46890585 -142388969 + AluSg SINE Alu 1 303 -7 297 0 0 0 chr6 46890949 46890982 -142388572 + (TG)n Simple_repeat Simple_repeat 2 34 0 2276 86 7 0 chr6 46890982 46891262 -142388292 - AluSc SINE Alu -27 282 1 1461 150 43 28 chr6 46891321 46891575 -142387979 + AluJb SINE Alu 1 258 -54 240 277 223 35 chr6 46892041 46892467 -142387087 - L1ME4a LINE L1 -294 5876 5371 530 218 10 0 chr6 46892531 46892632 -142386922 + MER8 DNA MER2_type 1 102 -137 231 191 0 0 chr6 46892631 46892673 -142386881 - Tigger2 DNA MER2_type -2675 43 2 * 352 255 66 0 chr6 46892673 46892779 -142386775 - L1ME4a LINE L1 -875 5271 5159 2445 89 3 6 chr6 46892819 46893133 -142386421 - AluSp SINE Alu 0 313 1 622 257 123 57 chr6 46893554 46893959 -142385595 + MLT1L LTR MaLR 124 615 0 568 291 35 17 chr6 46894051 46894223 -142385331 + MIR SINE MIR 31 205 -57 1906 235 118 12 chr6 46894374 46895042 -142384512 + L2 LINE L2 1329 2067 -1247 524 228 99 31 chr6 46895044 46895206 -142384348 + LTR16B LTR ERVL 292 464 0 991 276 93 18 chr6 46895207 46895709 -142383845 + L2 LINE L2 2569 3133 -180 1023 175 43 9 chr6 46895709 46895920 -142383634 + MER20 DNA MER1_type 2 219 0 991 276 93 18 chr6 46895920 46896115 -142383439 + L2 LINE L2 3133 3312 -1 266 248 9 38 chr6 46896123 46896228 -142383326 - MIR SINE MIR 0 262 161 2870 134 48 5 chr6 46897984 46898424 -142381130 - LTR32 LTR ERVL 0 471 13 360 296 78 34 chr6 46899473 46899652 -142379902 + HAL1b LINE L1 66 252 -1096 1697 179 7 21 chr6 46899693 46900023 -142379531 + AluJb SINE Alu 1 312 0 2029 133 10 10 chr6 46900111 46900420 -142379134 - AluJb SINE Alu -3 309 1 1040 129 32 25 chr6 46900425 46900600 -142378954 - MSTC LTR MaLR -48 370 205 370 250 110 71 chr6 46900600 46900992 -142378562 + HAL1b LINE L1 529 935 -413 306 220 33 0 chr6 46901452 46901543 -142378011 + L2 LINE L2 2207 2300 -1014 904 172 74 6 chr6 46901551 46901714 -142377840 - MER2 DNA MER2_type -1 344 171 619 249 42 50 chr6 46901714 46901757 -142377797 + L2 LINE L2 2652 2694 -619 2045 128 3 13 chr6 46901757 46902062 -142377492 - AluSx SINE Alu -10 302 1 619 249 42 50 chr6 46902062 46902373 -142377181 + L2 LINE L2 2694 3094 -219 359 287 46 9 chr6 46902371 46902479 -142377075 + L2 LINE L2 3202 3313 0 * 207 100 0 0 chr6 46903273 46903303 -142376251 + (TA)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr6 46903366 46903390 -142376164 + AT_rich Low_complexity Low_complexity 1 24 0 1926 146 7 7 chr6 46903752 46904047 -142375507 - AluJb SINE Alu -17 295 1 181 97 97 0 chr6 46904235 46904266 -142375288 - L2 LINE L2 -96 3217 3184 451 238 199 28 chr6 46904287 46904730 -142374824 + HAL1b LINE L1 1193 1317 -31 254 296 6 62 chr6 46905180 46905342 -142374212 + MIR SINE MIR 48 200 -62 348 279 54 23 chr6 46905460 46905589 -142373965 + L2 LINE L2 3127 3259 -13 207 0 0 0 chr6 46905589 46905612 -142373942 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 238 236 146 9 chr6 46906351 46906461 -142373093 - MIR SINE MIR -14 248 124 213 293 13 13 chr6 46906539 46906614 -142372940 + GA-rich Low_complexity Low_complexity 1 75 0 519 267 56 6 chr6 46906808 46906969 -142372585 - MIR SINE MIR -18 244 76 183 273 232 0 chr6 46907052 46907151 -142372403 + L2 LINE L2 3149 3270 -2 242 250 144 19 chr6 46907420 46907524 -142372030 - L2 LINE L2 -20 3252 3136 2019 152 7 0 chr6 46907582 46907892 -142371662 + AluSq SINE Alu 1 312 -1 183 293 93 40 chr6 46907940 46908015 -142371539 - L2 LINE L2 -208 3064 2986 1235 229 113 40 chr6 46908034 46908472 -142371082 - L1ME3A LINE L1 -108 6062 5531 2441 88 0 0 chr6 46908472 46908767 -142370787 - AluSc SINE Alu -14 295 1 1235 229 113 40 chr6 46908767 46909066 -142370488 - L1ME3A LINE L1 -639 5531 5255 827 264 57 11 chr6 46909172 46909497 -142370057 - L1ME3A LINE L1 -1110 5036 4702 343 278 124 30 chr6 46909546 46909715 -142369839 + MIR SINE MIR 46 230 -32 2941 130 7 0 chr6 46909716 46910147 -142369407 + MER57B LTR ERV1 1 434 0 925 163 7 7 chr6 46910147 46910294 -142369260 + MER57B-int LTR ERV1 1 147 -7390 * 4062 148 104 15 chr6 46910268 46911245 -142368309 + MER57B-int LTR ERV1 595 1742 -4204 956 138 7 7 chr6 46911249 46911401 -142368153 + MER57B-int LTR ERV1 1866 2017 -3929 254 137 98 0 chr6 46911397 46911448 -142368106 + MER57B-int LTR ERV1 2781 2836 -4701 * 6181 145 45 31 chr6 46911429 46912531 -142367023 + MER57B-int LTR ERV1 2209 2720 -2295 2177 108 0 3 chr6 46912531 46912845 -142366709 + AluSq SINE Alu 1 313 0 6181 145 45 31 chr6 46912845 46913428 -142366126 + MER57B-int LTR ERV1 2720 3294 -1721 12402 92 113 76 chr6 46913431 46913860 -142365694 + MER57B-int LTR ERV1 5307 5719 -1818 2898 16 0 6 chr6 46913860 46914180 -142365374 - AluYb8 SINE Alu 0 318 1 12402 92 113 76 chr6 46914180 46915121 -142364433 + MER57B-int LTR ERV1 5719 6624 -913 1995 151 7 0 chr6 46915121 46915426 -142364128 + AluSx SINE Alu 1 307 -5 12402 92 113 76 chr6 46915426 46916205 -142363349 + MER57B-int LTR ERV1 6624 7537 0 2947 123 9 0 chr6 46916205 46916635 -142362919 + MER57B LTR ERV1 1 434 0 298 250 29 79 chr6 46916686 46916826 -142362728 + L2 LINE L2 3136 3268 -4 1039 62 0 0 chr6 46918258 46918388 -142361166 - AluY SINE Alu -9 302 173 22 56 0 0 chr6 46918395 46918431 -142361123 + AT_rich Low_complexity Low_complexity 1 36 0 200 336 64 9 chr6 46918769 46918879 -142360675 - L2 LINE L2 -429 2885 2770 1626 164 11 28 chr6 46918883 46919169 -142360385 - AluJo SINE Alu -31 281 1 548 237 56 45 chr6 46919229 46919427 -142360127 - MIR SINE MIR -61 201 2 367 351 114 9 chr6 46919438 46919496 -142360058 - L2 LINE L2 -555 2759 2709 2061 135 3 10 chr6 46919496 46919799 -142359755 + AluSx SINE Alu 1 301 -11 367 351 114 9 chr6 46919799 46920290 -142359264 - L2 LINE L2 -605 2709 2152 306 365 7 14 chr6 46920355 46920503 -142359051 - L2 LINE L2 -1347 1967 1821 573 273 97 63 chr6 46920732 46921146 -142358408 + L1MC4 LINE L1 7578 8005 -37 * 2995 178 4 17 chr6 46921142 46921677 -142357877 - L1MA10 LINE L1 -33 6301 5774 1958 151 0 17 chr6 46921687 46921986 -142357568 - AluSx SINE Alu -18 294 1 5022 42 2 2 chr6 46922138 46922733 -142356821 - L1PA5 LINE L1 -2 6152 5558 685 154 105 105 chr6 46923398 46923473 -142356081 - MER20 DNA MER1_type -57 162 88 908 175 6 23 chr6 46923473 46923644 -142355910 - FAM SINE Alu -4 171 4 685 154 105 105 chr6 46923644 46923730 -142355824 - MER20 DNA MER1_type -130 89 1 194 343 37 28 chr6 46923784 46923892 -142355662 - MER5A DNA MER1_type -42 147 39 2529 54 0 0 chr6 46924079 46924375 -142355179 - AluY SINE Alu -15 296 1 264 255 191 0 chr6 46924433 46924527 -142355027 - MER20 DNA MER1_type -107 112 1 1154 134 6 0 chr6 46924791 46924948 -142354606 + AluSx SINE Alu 1 158 -154 1141 115 0 0 chr6 46925038 46925195 -142354359 + AluSx SINE Alu 156 312 0 332 326 61 0 chr6 46925800 46925932 -142353622 + MIR SINE MIR 94 233 -29 268 309 154 0 chr6 46926012 46926135 -142353419 - MIR3 SINE MIR -3 205 64 229 88 0 0 chr6 46926627 46926661 -142352893 - L1MB7 LINE L1 -214 5970 5937 3419 163 32 63 chr6 46926697 46927260 -142352294 - L1MB7 LINE L1 -235 5949 5371 2104 118 3 0 chr6 46927260 46927548 -142352006 - AluSx SINE Alu -23 289 1 3419 163 32 63 chr6 46927548 46927987 -142351567 - L1MB7 LINE L1 -813 5371 4965 2311 86 3 6 chr6 46927987 46928301 -142351253 + AluSq SINE Alu 1 313 0 3419 163 32 63 chr6 46928301 46928365 -142351189 - L1MB7 LINE L1 -1219 4965 4901 1045 250 0 25 chr6 46928385 46928629 -142350925 + MER8 DNA MER2_type 2 239 0 476 224 0 10 chr6 46928749 46928847 -142350707 - MER5B DNA MER1_type -81 97 1 24 0 0 0 chr6 46929083 46929107 -142350447 + AT_rich Low_complexity Low_complexity 1 24 0 1057 169 0 0 chr6 46929218 46929395 -142350159 - FRAM SINE Alu -7 169 1 2253 97 3 0 chr6 46929409 46929719 -142349835 - AluSp SINE Alu -2 311 1 232 233 243 39 chr6 46930299 46930402 -142349152 + MER5C DNA MER1_type 1 124 -200 331 197 92 0 chr6 46930415 46930491 -142349063 + MER5C DNA MER1_type 229 311 -13 31 44 0 0 chr6 46930974 46931019 -142348535 + AT_rich Low_complexity Low_complexity 1 45 0 2232 80 3 0 chr6 46931041 46931327 -142348227 - AluSp SINE Alu -26 287 1 2241 104 0 0 chr6 46931332 46931639 -142347915 - AluSx SINE Alu -2 310 4 1458 148 0 4 chr6 46931645 46931881 -142347673 - AluJb SINE Alu -17 295 61 1091 146 0 68 chr6 46931922 46931990 -142347564 - AluSx SINE Alu -121 191 120 2152 95 7 3 chr6 46931990 46932286 -142347268 - AluSq SINE Alu -16 297 1 1091 146 0 68 chr6 46932286 46932422 -142347132 - AluSx SINE Alu -192 120 1 306 0 0 0 chr6 46932430 46932464 -142347090 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2477 74 0 0 chr6 46932466 46932777 -142346777 - AluY SINE Alu 0 311 1 2441 54 0 10 chr6 46932800 46933114 -142346440 - AluY SINE Alu 0 311 1 481 244 122 12 chr6 46933640 46933804 -142345750 - MIR SINE MIR -6 256 75 770 178 0 0 chr6 46934248 46934366 -142345188 + FLAM_C SINE Alu 2 119 -24 189 0 0 0 chr6 46934369 46934390 -142345164 + (TG)n Simple_repeat Simple_repeat 2 22 0 1755 60 0 0 chr6 46934607 46934824 -142344730 - AluY SINE Alu -16 295 79 1024 254 25 0 chr6 46936221 46936465 -142343089 - MIR SINE MIR 0 262 13 567 255 68 12 chr6 46936904 46937065 -142342489 - MIR3 SINE MIR -4 204 35 587 298 76 0 chr6 46937461 46937632 -142341922 - MIR SINE MIR -1 261 78 258 217 0 0 chr6 46938164 46938233 -142341321 + CT-rich Low_complexity Low_complexity 2 70 0 528 205 80 18 chr6 46938239 46938351 -142341203 - L2 LINE L2 0 3313 3195 351 0 0 0 chr6 46938419 46938458 -142341096 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 22 70 0 0 chr6 46939583 46939626 -142339928 + AT_rich Low_complexity Low_complexity 1 43 0 1839 226 64 14 chr6 46939804 46940243 -142339311 - MLT1C LTR MaLR 0 467 7 634 272 120 36 chr6 46940296 46940712 -142338842 - L1MC/D LINE L1 -2038 5770 5320 1337 140 0 9 chr6 46940730 46940944 -142338610 + AluJb SINE Alu 89 300 -12 480 269 0 25 chr6 46941083 46941202 -142338352 - MIR SINE MIR -69 193 78 732 157 50 0 chr6 46941276 46941397 -142338157 - FLAM_A SINE Alu -6 127 1 334 289 19 13 chr6 46941409 46941565 -142337989 - L1MC/D LINE L1 -1112 5034 4878 1917 145 3 0 chr6 46941589 46941885 -142337669 + AluJb SINE Alu 1 297 -15 562 101 38 0 chr6 46941885 46941964 -142337590 - AluJ/FLAM SINE Alu -222 90 9 292 233 25 82 chr6 46941988 46942147 -142337407 - L1 LINE L1 -1742 4404 4255 21 0 0 0 chr6 46942321 46942342 -142337212 + AT_rich Low_complexity Low_complexity 1 21 0 2227 82 0 0 chr6 46942351 46942642 -142336912 + AluSx SINE Alu 1 291 -21 34 24 0 0 chr6 46942642 46942683 -142336871 + AT_rich Low_complexity Low_complexity 1 41 0 451 245 0 11 chr6 46942714 46942808 -142336746 - MER91B DNA MER1_type -10 180 88 207 284 62 37 chr6 46942873 46942954 -142336600 + MER91 DNA MER1_type 43 125 -65 206 320 94 41 chr6 46943121 46943365 -142336189 + L2 LINE L2 2629 2885 -429 * 239 245 206 52 chr6 46943355 46943510 -142336044 + MIR SINE MIR 67 245 -17 1854 156 3 0 chr6 46945023 46945325 -142334229 + AluSx SINE Alu 1 303 -9 2030 125 0 0 chr6 46945852 46946141 -142333413 + AluSx SINE Alu 1 289 -23 220 300 62 39 chr6 46946468 46946598 -142332956 - MIR SINE MIR -12 250 118 1606 136 140 0 chr6 46946605 46946862 -142332692 + AluJb SINE Alu 2 294 -8 300 189 0 0 chr6 46946887 46946940 -142332614 - MIR SINE MIR -133 129 77 787 121 8 53 chr6 46948083 46948215 -142331339 + FLAM_C SINE Alu 9 134 -9 394 191 0 0 chr6 46948248 46948316 -142331238 - MIR SINE MIR -57 151 84 490 305 23 0 chr6 46951078 46951209 -142328345 - MIR3 SINE MIR -10 198 65 554 111 0 10 chr6 46952784 46952888 -142326666 - L1MB1 LINE L1 -1 6167 6092 1809 150 3 3 chr6 46952890 46953177 -142326377 + AluJo SINE Alu 1 287 -25 2279 87 0 10 chr6 46953199 46953511 -142326043 + AluSq SINE Alu 1 309 -4 896 137 0 8 chr6 46954194 46954325 -142325229 + FLAM_C SINE Alu 2 131 -2 2105 123 7 0 chr6 46957395 46957705 -142321849 + AluSx SINE Alu 1 312 0 288 77 0 0 chr6 46957721 46957760 -142321794 + (GGGGA)n Simple_repeat Simple_repeat 4 42 0 322 268 73 0 chr6 46957882 46957996 -142321558 - L1 LINE L1 -2947 3199 3081 426 191 34 34 chr6 46957996 46958232 -142321322 + CT-rich Low_complexity Low_complexity 1 236 0 1580 254 47 35 chr6 46959483 46960024 -142319530 - L2 LINE L2 0 3313 2767 393 317 84 48 chr6 46960412 46960661 -142318893 + L2 LINE L2 2927 3184 -88 406 318 67 22 chr6 46960738 46961005 -142318549 - L2 LINE L2 -583 2731 2453 708 263 151 22 chr6 46961072 46961238 -142318316 + MIR SINE MIR 1 207 -55 596 192 64 35 chr6 46961238 46961410 -142318144 + MER104 DNA MER2_type 1 177 -3 708 263 151 22 chr6 46961410 46961475 -142318079 + MIR SINE MIR 207 262 0 962 98 0 0 chr6 46961579 46961712 -142317842 + AluJb SINE Alu 1 133 -179 207 88 0 0 chr6 46961740 46961774 -142317780 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1232 172 0 0 chr6 46962613 46962817 -142316737 - AluJb SINE Alu -89 223 20 206 222 22 0 chr6 46962833 46962878 -142316676 - MIR SINE MIR -67 141 96 2076 133 3 0 chr6 46963089 46963397 -142316157 + AluSx SINE Alu 1 309 -3 371 240 146 0 chr6 46963397 46963493 -142316061 + FLAM_A SINE Alu 23 132 -1 724 227 271 14 chr6 46963620 46963904 -142315650 + HAL1b LINE L1 895 1105 -243 1247 153 88 61 chr6 46963904 46964198 -142315356 - AluJo SINE Alu -9 303 2 724 227 271 14 chr6 46964198 46964274 -142315280 + HAL1b LINE L1 1105 1348 0 5938 177 44 30 chr6 46964500 46964785 -142314769 + L1MC1 LINE L1 4566 4846 -1487 2165 107 0 0 chr6 46964785 46965084 -142314470 - AluSg SINE Alu -11 299 1 5938 177 44 30 chr6 46965084 46965734 -142313820 + L1MC1 LINE L1 4846 5486 -847 2479 71 0 0 chr6 46965734 46966045 -142313509 + AluY SINE Alu 1 311 0 5938 177 44 30 chr6 46966045 46966776 -142312778 + L1MC1 LINE L1 5486 6319 -14 201 306 180 30 chr6 46967170 46967543 -142312011 - L2 LINE L2 -962 2352 1924 367 355 59 21 chr6 46967789 46967975 -142311579 + L1MC4a LINE L1 5747 5939 -1869 384 298 48 0 chr6 46970905 46971009 -142308545 + MIR SINE MIR 104 212 -50 273 119 0 0 chr6 46971077 46971119 -142308435 + (TCCCC)n Simple_repeat Simple_repeat 5 46 0 216 286 0 0 chr6 46971123 46971172 -142308382 + T-rich Low_complexity Low_complexity 3 51 0 418 125 25 0 chr6 46971274 46971354 -142308200 + GA-rich Low_complexity Low_complexity 1 82 0 734 154 8 0 chr6 46971378 46971495 -142308059 + FLAM_C SINE Alu 1 118 -25 22 56 0 0 chr6 46971506 46971542 -142308012 + AT_rich Low_complexity Low_complexity 1 36 0 276 217 17 0 chr6 46971749 46971809 -142307745 - L2 LINE L2 0 3272 3212 698 241 27 11 chr6 46971867 46972054 -142307500 + MIR SINE MIR 73 262 0 2883 110 94 116 chr6 46972060 46972444 -142307110 + MER6A DNA MER2_type 1 367 -498 1934 138 3 0 chr6 46972444 46972741 -142306813 - AluSx SINE Alu -14 298 1 2883 110 94 116 chr6 46972741 46972975 -142306579 + MER6A DNA MER2_type 367 605 0 232 284 68 81 chr6 46973389 46973537 -142306017 - MIR SINE MIR -70 192 47 760 268 66 0 chr6 46973843 46974041 -142305513 + MER5C DNA MER1_type 5 215 -109 2121 105 0 22 chr6 46974045 46974359 -142305195 - AluSx SINE Alu -5 307 1 556 253 14 0 chr6 46974363 46974509 -142305045 - L1MD2 LINE L1 -13 6346 6199 * 731 167 84 0 chr6 46974506 46974682 -142304872 - L1M LINE L1 -743 5403 5233 391 196 29 10 chr6 46974682 46974784 -142304770 + MER5C DNA MER1_type 218 321 -3 21 0 0 0 chr6 46974855 46974876 -142304678 + AT_rich Low_complexity Low_complexity 1 21 0 292 191 0 44 chr6 46975583 46975639 -142303915 + CT-rich Low_complexity Low_complexity 3 57 -10 2295 90 0 3 chr6 46975639 46975949 -142303605 - AluSc SINE Alu 0 309 1 292 191 0 44 chr6 46975949 46975960 -142303594 + CT-rich Low_complexity Low_complexity 57 67 0 2180 67 43 3 chr6 46975965 46976292 -142303262 - AluY SINE Alu 0 339 1 449 283 100 58 chr6 46976457 46977145 -142302409 - L1ME3 LINE L1 -296 5849 647 1289 189 89 32 chr6 46977160 46977441 -142302113 - AluJo SINE Alu -9 303 7 7075 60 7 8 chr6 46977483 46978986 -142300568 - SVA Other Other -839 1386 1 1504 177 51 3 chr6 46978995 46979289 -142300265 - AluJb SINE Alu -4 308 1 1095 186 83 0 chr6 46979892 46980085 -142299469 + MER3 DNA MER1_type 1 209 0 338 313 36 66 chr6 46980087 46980345 -142299209 - L1ME3A LINE L1 -305 5865 5654 269 304 43 0 chr6 46980855 46980970 -142298584 - L2 LINE L2 -3 3269 3150 2117 151 29 3 chr6 46981333 46981684 -142297870 + MLT1A1 LTR MaLR 6 365 0 252 253 12 48 chr6 46982812 46982895 -142296659 + MIR3 SINE MIR 112 191 -17 367 357 42 24 chr6 46982991 46983204 -142296350 - MIR SINE MIR -18 244 28 2271 93 10 0 chr6 46983340 46983650 -142295904 - AluSp SINE Alu 0 313 1 433 265 65 80 chr6 46984311 46984960 -142294594 + HAL1b LINE L1 2 640 -708 1195 150 88 66 chr6 46984960 46985260 -142294294 - AluSg SINE Alu 0 307 2 23 54 0 0 chr6 46985305 46985342 -142294212 + AT_rich Low_complexity Low_complexity 1 37 0 5648 173 77 35 chr6 46985562 46985846 -142293708 + L1MC1 LINE L1 4566 4837 -1496 2192 107 0 0 chr6 46985846 46986145 -142293409 - AluSg SINE Alu -11 299 1 5648 173 77 35 chr6 46986145 46986795 -142292759 + L1MC1 LINE L1 4837 5458 -875 2488 71 0 0 chr6 46986795 46987105 -142292449 + AluY SINE Alu 1 310 -1 5648 173 77 35 chr6 46987105 46987837 -142291717 + L1MC1 LINE L1 5458 6319 -14 253 319 177 27 chr6 46988231 46988604 -142290950 - L2 LINE L2 -962 2352 1924 250 341 64 23 chr6 46988850 46989023 -142290531 + L1MC4a LINE L1 5747 5926 -1882 227 328 8 31 chr6 46990940 46991068 -142288486 + T-rich Low_complexity Low_complexity 5 129 0 246 189 49 33 chr6 46991531 46991653 -142287901 + A-rich Low_complexity Low_complexity 6 129 0 396 190 9 17 chr6 46991685 46991801 -142287753 + CT-rich Low_complexity Low_complexity 1 115 0 2141 86 36 17 chr6 46991810 46992112 -142287442 - AluSc SINE Alu -1 308 1 1896 145 26 0 chr6 46992144 46992448 -142287106 - AluSx SINE Alu 0 312 1 290 259 31 51 chr6 46992731 46992986 -142286568 - L1MEd LINE L1 -5256 863 614 4374 140 22 48 chr6 46993047 46993574 -142285980 - L1MB3 LINE L1 -8 6175 5677 2287 81 3 0 chr6 46993574 46993869 -142285685 - AluSp SINE Alu -17 296 1 4374 140 22 48 chr6 46993869 46994204 -142285350 - L1MB3 LINE L1 -506 5677 5335 1953 133 0 23 chr6 46994275 46994576 -142284978 - AluSx SINE Alu -18 294 1 3193 220 30 34 chr6 46994579 46995319 -142284235 - L1MB3 LINE L1 -980 5166 4429 2030 83 3 64 chr6 46995319 46995632 -142283922 + AluSc SINE Alu 1 294 -15 3193 220 30 34 chr6 46995632 46995800 -142283754 - L1MB3 LINE L1 -1717 4429 4262 213 39 0 0 chr6 46995801 46995827 -142283727 + (TG)n Simple_repeat Simple_repeat 2 27 0 440 319 60 50 chr6 46995844 46996145 -142283409 - L1MEd LINE L1 -5664 455 152 575 229 196 11 chr6 46996401 46996580 -142282974 - MIR SINE MIR -15 247 36 205 167 0 0 chr6 46997063 46997099 -142282455 + (CTG)n Simple_repeat Simple_repeat 1 36 0 312 85 0 0 chr6 46997372 46997419 -142282135 + MADE1 DNA Mariner 34 80 0 301 232 133 0 chr6 46997435 46997539 -142282015 - MIR SINE MIR -62 146 36 241 324 93 0 chr6 46997743 46997851 -142281703 + MIR SINE MIR 28 145 -117 253 264 21 64 chr6 46997854 46997994 -142281560 + L1ME3A LINE L1 5824 5957 -213 192 376 12 12 chr6 46998314 46998399 -142281155 + MIR SINE MIR 45 129 -79 197 271 114 0 chr6 46998560 46998630 -142280924 + MIR SINE MIR 63 140 -68 1192 173 24 40 chr6 46998855 46999104 -142280450 + MIR SINE MIR 13 257 -5 335 329 146 42 chr6 46999141 46999670 -142279884 + L2 LINE L2 2454 3038 -234 353 229 171 19 chr6 47000053 47000158 -142279396 - L2 LINE L2 -2 3311 3191 1647 123 32 14 chr6 47001872 47002192 -142277362 + AluJb SINE Alu 1 325 0 351 0 0 0 chr6 47002607 47002646 -142276908 + (TG)n Simple_repeat Simple_repeat 2 40 0 223 260 0 39 chr6 47002873 47002950 -142276604 + C-rich Low_complexity Low_complexity 3 76 0 2353 71 10 3 chr6 47004742 47005053 -142274501 - AluSp SINE Alu 0 313 1 2001 99 45 0 chr6 47007699 47007991 -142271563 - AluSq SINE Alu -8 305 1 2444 158 19 67 chr6 47008000 47008325 -142271229 - L1MB8 LINE L1 -1 6177 5889 1414 186 120 0 chr6 47008325 47008583 -142270971 - AluJo SINE Alu -13 289 1 2444 158 19 67 chr6 47008583 47008825 -142270729 - L1MB8 LINE L1 -289 5889 5637 199 212 152 0 chr6 47013219 47013285 -142266269 + L2 LINE L2 3146 3221 -51 205 269 9 130 chr6 47014389 47014497 -142265057 + MIR SINE MIR 46 140 -68 222 313 0 0 chr6 47016372 47016439 -142263115 + (TA)n Simple_repeat Simple_repeat 1 67 0 347 89 0 0 chr6 47016439 47016484 -142263070 - MER20 DNA MER1_type 0 219 175 1625 123 0 38 chr6 47016484 47016745 -142262809 - AluJo SINE Alu -20 292 42 916 126 138 6 chr6 47016813 47016972 -142262582 - MER20 DNA MER1_type -35 184 5 399 351 99 5 chr6 47017350 47017572 -142261982 - Charlie8 DNA MER1_type -2161 256 14 186 133 0 0 chr6 47021130 47021160 -142258394 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 * 207 0 0 0 chr6 47021158 47021181 -142258373 + (T)n Simple_repeat Simple_repeat 1 23 0 2259 79 0 32 chr6 47024655 47024971 -142254583 - AluSp SINE Alu -7 306 1 200 313 0 0 chr6 47028336 47028400 -142251154 + (CCCCAG)n Simple_repeat Simple_repeat 5 68 0 337 235 0 25 chr6 47029264 47029345 -142250209 - MIR SINE MIR -28 234 156 613 300 81 83 chr6 47030285 47030692 -142248862 + L1MEd LINE L1 540 945 -5174 2216 79 28 0 chr6 47030778 47031069 -142248485 + AluSq SINE Alu 1 299 -14 450 312 64 0 chr6 47031153 47031310 -142248244 + L2 LINE L2 3106 3272 0 1067 219 80 33 chr6 47031634 47031968 -142247586 - MSTD LTR MaLR -11 385 2 2283 86 3 6 chr6 47032285 47032599 -142246955 + AluSp SINE Alu 1 313 0 222 62 0 0 chr6 47032630 47032662 -142246892 + (TATG)n Simple_repeat Simple_repeat 1 32 0 1770 147 7 0 chr6 47032664 47032937 -142246617 - AluSx SINE Alu -37 275 1 794 204 45 17 chr6 47033031 47033207 -142246347 - MIR SINE MIR -34 228 48 1922 137 0 35 chr6 47033535 47033848 -142245706 - AluSq SINE Alu -11 302 1 245 279 115 19 chr6 47033979 47034083 -142245471 + MIR SINE MIR 35 148 -114 2078 85 26 0 chr6 47034396 47034668 -142244886 - AluSg SINE Alu -31 279 1 1989 116 3 7 chr6 47034884 47035207 -142244347 - AluSx SINE Alu 0 322 1 1266 209 78 39 chr6 47035575 47035892 -142243662 + L1ME2 LINE L1 5785 6119 -45 1989 123 3 10 chr6 47035892 47036202 -142243352 - AluSc SINE Alu -1 308 1 1266 209 78 39 chr6 47036202 47036242 -142243312 + L1ME2 LINE L1 6119 6156 -8 25 51 0 0 chr6 47036249 47036288 -142243266 + AT_rich Low_complexity Low_complexity 1 39 0 1048 261 14 0 chr6 47036439 47036646 -142242908 + MER63A DNA MER1_type 1 210 0 2198 120 0 0 chr6 47036799 47037100 -142242454 + AluSx SINE Alu 1 301 -11 423 314 20 68 chr6 47037199 47037447 -142242107 + MER102b DNA MER1_type 106 341 0 291 275 20 150 chr6 47037664 47037864 -142241690 + MER5B DNA MER1_type 5 178 0 1150 221 69 93 chr6 47038360 47038711 -142240843 - L2 LINE L2 -4 3309 2972 1591 167 33 0 chr6 47038711 47038981 -142240573 - AluJo SINE Alu -26 286 8 1150 221 69 93 chr6 47038981 47039123 -142240431 - L2 LINE L2 -341 2972 2828 2091 88 0 7 chr6 47039213 47039487 -142240067 + AluSx SINE Alu 22 293 -19 318 282 39 0 chr6 47039911 47040014 -142239540 - L2 LINE L2 -7 3306 3200 226 228 32 8 chr6 47041896 47042019 -142237535 + (CA)n Simple_repeat Simple_repeat 2 127 0 433 319 111 56 chr6 47042582 47042687 -142236867 + L2 LINE L2 2909 3007 -265 1874 117 35 10 chr6 47042687 47042977 -142236577 - AluSg SINE Alu -13 297 1 433 319 111 56 chr6 47042977 47043213 -142236341 + L2 LINE L2 3007 3269 -3 1728 128 78 0 chr6 47043356 47043651 -142235903 + MER1B DNA MER1_type 15 339 0 616 261 69 11 chr6 47043728 47043916 -142235638 - MIR SINE MIR -5 257 59 590 260 207 26 chr6 47044018 47044322 -142235232 - MLT2F LTR ERVL -55 608 250 243 139 23 0 chr6 47044409 47044452 -142235102 - MLT2F LTR ERVL -535 93 50 615 271 133 34 chr6 47045356 47045710 -142233844 + L1MC5 LINE L1 7308 7696 -265 529 260 55 51 chr6 47045797 47045835 -142233719 + L1MC5 LINE L1 7662 7698 -263 2216 114 0 3 chr6 47045835 47046143 -142233411 + AluSx SINE Alu 1 307 -5 529 260 55 51 chr6 47046143 47046377 -142233177 + L1MC5 LINE L1 7698 7935 -26 619 157 33 0 chr6 47046865 47046986 -142232568 + MIR SINE MIR 81 205 -57 1761 92 8 4 chr6 47047181 47047431 -142232123 + AluSq SINE Alu 1 251 -62 921 134 0 0 chr6 47047609 47047743 -142231811 - FLAM_C SINE Alu -4 139 6 238 246 60 97 chr6 47048513 47048647 -142230907 + MER94 DNA DNA 1 129 -5 380 248 43 43 chr6 47048667 47048784 -142230770 - MIR SINE MIR -43 219 103 289 93 37 0 chr6 47048882 47048936 -142230618 + (TG)n Simple_repeat Simple_repeat 1 56 0 889 258 94 15 chr6 47048987 47049405 -142230149 - LTR16A LTR ERVL 0 450 1 284 302 50 43 chr6 47050118 47050257 -142229297 + MIR3 SINE MIR 20 159 -49 * 400 271 126 0 chr6 47050250 47050401 -142229153 + MIR SINE MIR 16 185 -77 230 281 47 0 chr6 47051574 47051638 -142227916 - MIR SINE MIR -122 140 74 589 192 15 31 chr6 47051830 47051960 -142227594 + MIR SINE MIR 30 157 -105 2264 97 0 0 chr6 47052014 47052314 -142227240 + AluSx SINE Alu 1 300 -12 1378 211 97 31 chr6 47052410 47052770 -142226784 - MLT1B LTR MaLR 0 390 7 587 268 63 97 chr6 47052775 47053179 -142226375 - MLT1H1 LTR MaLR -149 406 10 259 329 19 63 chr6 47053712 47053870 -142225684 + MIR SINE MIR 34 184 -78 278 289 52 92 chr6 47054401 47054574 -142224980 - MIR SINE MIR -3 259 94 2176 125 0 0 chr6 47054712 47055024 -142224530 + AluJb SINE Alu 1 312 0 355 306 36 44 chr6 47055033 47055214 -142224340 - MIR SINE MIR -36 172 1 237 237 0 0 chr6 47055247 47055306 -142224248 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 582 212 0 9 chr6 47055334 47055447 -142224107 - AluJb SINE Alu -199 113 2 331 345 50 0 chr6 47055449 47055588 -142223966 + MIR SINE MIR 88 233 -29 321 272 44 26 chr6 47055618 47055732 -142223822 - L2 LINE L2 -16 3256 3141 661 240 7 7 chr6 47056520 47056666 -142222888 - MIR SINE MIR -108 154 9 257 271 86 0 chr6 47057541 47057611 -142221943 - MIR SINE MIR -182 80 5 302 276 181 31 chr6 47058411 47058538 -142221016 - MER5A DNA MER1_type 0 189 44 2104 119 0 10 chr6 47058817 47059119 -142220435 - AluSx SINE Alu -13 299 1 24 32 0 0 chr6 47059121 47059152 -142220402 + AT_rich Low_complexity Low_complexity 1 31 0 797 304 7 26 chr6 47059327 47059611 -142219943 - L1MC4a LINE L1 -549 5810 5668 311 206 35 159 chr6 47059618 47059788 -142219766 - MIR SINE MIR -113 149 1 427 115 13 198 chr6 47060911 47061068 -142218486 + MER91B DNA MER1_type 3 130 -60 461 243 10 0 chr6 47061077 47061180 -142218374 + MER91B DNA MER1_type 82 185 -5 535 294 20 0 chr6 47061959 47062112 -142217442 + MIR SINE MIR 31 186 -76 2099 135 3 0 chr6 47062123 47062434 -142217120 - AluSx SINE Alu 0 312 1 221 83 28 0 chr6 47063053 47063089 -142216465 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 813 187 0 0 chr6 47063171 47063451 -142216103 + (TG)n Simple_repeat Simple_repeat 1 280 0 333 273 25 16 chr6 47063516 47063637 -142215917 + MIR SINE MIR 32 153 -109 379 273 50 56 chr6 47064221 47064382 -142215172 + MIR SINE MIR 30 189 -19 376 261 65 36 chr6 47065106 47065244 -142214310 - MIR SINE MIR -33 229 88 200 261 62 0 chr6 47065528 47065593 -142213961 + MIR SINE MIR 117 185 -77 919 233 50 80 chr6 47066119 47066342 -142213212 + L1MC4 LINE L1 7555 7783 -259 2181 103 3 0 chr6 47066342 47066643 -142212911 + AluSq SINE Alu 1 302 -11 919 233 50 80 chr6 47066643 47066921 -142212633 + L1MC4 LINE L1 7783 8041 -1 298 242 280 8 chr6 47068635 47068767 -142210787 - MIR3 SINE MIR -25 183 16 1984 112 7 26 chr6 47069001 47069304 -142210250 + AluSq SINE Alu 1 297 -16 283 274 92 41 chr6 47069499 47069668 -142209886 + MIR SINE MIR 37 229 -33 236 352 38 9 chr6 47069937 47070042 -142209512 - MIR SINE MIR -108 154 47 483 207 36 27 chr6 47070638 47070749 -142208805 + MER81 DNA DNA 3 114 0 184 265 82 95 chr6 47070804 47070898 -142208656 - MER5B DNA MER1_type -22 156 63 1884 150 20 0 chr6 47070898 47071192 -142208362 - AluJb SINE Alu -11 301 2 184 265 82 95 chr6 47071192 47071244 -142208310 - MER5B DNA MER1_type -115 63 12 482 222 233 11 chr6 47071326 47071502 -142208052 - MIR SINE MIR 0 262 48 278 287 26 9 chr6 47071545 47071660 -142207894 + GA-rich Low_complexity Low_complexity 3 119 0 1815 176 0 0 chr6 47071924 47072219 -142207335 - AluJo SINE Alu -15 297 3 2281 103 0 6 chr6 47072236 47072548 -142207006 - AluSx SINE Alu -2 310 1 2344 194 102 47 chr6 47072754 47073434 -142206120 - L1ME1 LINE L1 -5 6161 5445 920 169 0 0 chr6 47073479 47073627 -142205927 + FRAM SINE Alu 13 160 -16 2354 91 3 0 chr6 47073701 47074009 -142205545 - AluSq SINE Alu -3 310 2 329 337 47 24 chr6 47074074 47074243 -142205311 + MIR SINE MIR 42 214 -48 608 290 187 32 chr6 47074287 47074890 -142204664 + L2 LINE L2 2458 3200 -113 1995 86 72 3 chr6 47074890 47075181 -142204373 - AluY SINE Alu 0 311 1 608 290 187 32 chr6 47075181 47075300 -142204254 + L2 LINE L2 3200 3299 -14 2068 119 0 3 chr6 47075306 47075609 -142203945 + AluSx SINE Alu 1 302 -10 217 231 66 77 chr6 47075864 47075955 -142203599 - MIR SINE MIR -76 132 43 382 223 0 108 chr6 47076039 47076169 -142203385 - MER63 DNA MER1_type -320 742 1 480 264 258 6 chr6 47076603 47076781 -142202773 - MIR SINE MIR 0 262 40 244 283 165 52 chr6 47076798 47076978 -142202576 + MIR SINE MIR 16 206 -56 2100 130 13 0 chr6 47077001 47077349 -142202205 + AluSx SINE Alu 1 352 0 2303 79 3 3 chr6 47077554 47077857 -142201697 - AluSx SINE Alu -9 303 1 1412 68 6 0 chr6 47078159 47078336 -142201218 + L1PA8 LINE L1 5989 6166 -6 21 36 0 0 chr6 47078339 47078367 -142201187 + AT_rich Low_complexity Low_complexity 1 28 0 843 149 0 129 chr6 47078367 47078523 -142201031 + MER2 DNA MER2_type 1 127 -218 1859 177 57 0 chr6 47078523 47078840 -142200714 + MER1B DNA MER1_type 3 337 0 843 149 0 129 chr6 47078840 47078884 -142200670 + MER2 DNA MER2_type 127 175 -170 1155 127 11 33 chr6 47078884 47078899 -142200655 + AluSq SINE Alu 121 135 -178 2428 96 0 0 chr6 47078899 47079202 -142200352 + AluSx SINE Alu 1 303 -9 1155 127 11 33 chr6 47079202 47079367 -142200187 + AluSq SINE Alu 135 297 -16 237 157 0 20 chr6 47079367 47079418 -142200136 + MER2 DNA MER2_type 173 222 -123 1373 166 0 9 chr6 47079418 47079629 -142199925 - AluJb SINE Alu -19 293 85 559 216 36 0 chr6 47079648 47079759 -142199795 + MER2 DNA MER2_type 231 345 0 597 219 53 24 chr6 47079788 47079957 -142199597 - L1ME3 LINE L1 -1 6161 5988 225 195 110 0 chr6 47079966 47080048 -142199506 - L1MC4a LINE L1 -1638 6170 6080 1896 163 0 3 chr6 47080084 47080367 -142199187 - AluJb SINE Alu -30 282 1 225 94 0 0 chr6 47080450 47080482 -142199072 + (TTATA)n Simple_repeat Simple_repeat 3 34 0 2525 84 0 0 chr6 47081359 47081668 -142197886 + AluSg SINE Alu 1 309 -1 868 227 110 37 chr6 47081809 47081950 -142197604 + MLT1H LTR MaLR 43 172 -377 1934 151 7 17 chr6 47081950 47082248 -142197306 + AluJb SINE Alu 1 295 -17 868 227 110 37 chr6 47082248 47082406 -142197148 + MLT1H LTR MaLR 172 364 -185 426 177 73 12 chr6 47082428 47082537 -142197017 + MLT1H LTR MaLR 454 549 0 1720 179 0 45 chr6 47082671 47082832 -142196722 - AluJb SINE Alu -18 294 152 2318 77 0 32 chr6 47082832 47083145 -142196409 - AluY SINE Alu -8 303 1 1720 179 0 45 chr6 47083145 47083291 -142196263 - AluJb SINE Alu -160 152 1 344 244 16 87 chr6 47083302 47083429 -142196125 - MIR SINE MIR -58 150 72 1807 135 102 28 chr6 47083437 47083600 -142195954 + MLT1B LTR MaLR 1 150 -240 2453 100 0 0 chr6 47083600 47083909 -142195645 + AluSq SINE Alu 1 309 -4 1807 135 102 28 chr6 47083909 47084108 -142195446 + MLT1B LTR MaLR 150 390 0 500 251 38 33 chr6 47084182 47084379 -142195175 + L1MC4 LINE L1 5423 5606 -515 1180 216 124 11 chr6 47084405 47084763 -142194791 + MLT1G1 LTR MaLR 1 341 -201 1369 161 18 5 chr6 47084766 47084984 -142194570 + AluJo SINE Alu 1 221 -91 782 254 5 28 chr6 47085049 47085266 -142194288 + MLT1G1 LTR MaLR 329 540 -2 281 215 0 31 chr6 47085297 47085430 -142194124 + L1MC4 LINE L1 5754 5787 -334 2433 140 22 32 chr6 47085430 47085645 -142193909 - MSTD LTR MaLR 0 396 185 2342 85 0 23 chr6 47085645 47085950 -142193604 - AluSg SINE Alu -12 298 1 2433 140 22 32 chr6 47085950 47086134 -142193420 - MSTD LTR MaLR -211 185 1 281 215 0 31 chr6 47086134 47086157 -142193397 + L1MC4 LINE L1 5787 5809 -312 1883 179 0 6 chr6 47086164 47086477 -142193077 + AluJo SINE Alu 1 311 -1 1013 163 19 0 chr6 47086477 47086629 -142192925 + AluJo SINE Alu 125 282 -30 352 235 10 71 chr6 47086631 47086729 -142192825 - L1MC4 LINE L1 -1338 6704 6613 * 359 178 0 41 chr6 47086707 47086780 -142192774 + L1MCa LINE L1 1995 2064 -4362 325 282 42 47 chr6 47086735 47086991 -142192563 - L1ME4a LINE L1 -153 6703 5768 330 129 43 43 chr6 47086805 47086875 -142192679 + L1MCa LINE L1 1995 2064 -4362 325 143 43 57 chr6 47086868 47086938 -142192616 + L1MCa LINE L1 1995 2063 -4363 * 341 286 42 25 chr6 47086960 47087079 -142192475 + L1MC4 LINE L1 6589 6709 -1333 28 48 0 0 chr6 47087648 47087690 -142191864 + AT_rich Low_complexity Low_complexity 1 42 0 531 284 84 42 chr6 47087697 47088127 -142191427 + L1ME4a LINE L1 5616 6063 -58 1672 151 6 70 chr6 47088573 47088885 -142190669 + AluJo SINE Alu 1 292 -20 1746 176 79 0 chr6 47088892 47089233 -142190321 + MLT1B LTR MaLR 1 368 -22 2019 114 24 7 chr6 47089257 47089546 -142190008 - AluSq SINE Alu -19 294 1 261 276 11 46 chr6 47090590 47090677 -142188877 - MIR3 SINE MIR -23 185 102 460 156 0 9 chr6 47090934 47091092 -142188462 - MER53 DNA DNA 0 189 1 1900 152 17 13 chr6 47091886 47092188 -142187366 - AluJb SINE Alu -9 303 1 451 194 44 26 chr6 47094202 47094322 -142185232 + MIR SINE MIR 30 150 -68 775 191 125 0 chr6 47094385 47094553 -142185001 - MER5A DNA MER1_type 0 189 1 2085 153 0 3 chr6 47094889 47095202 -142184352 - AluJo SINE Alu 0 312 1 2452 49 20 13 chr6 47095441 47095747 -142183807 + AluY SINE Alu 1 308 -3 491 308 34 13 chr6 47095814 47096048 -142183506 - L1ME4a LINE L1 -346 5775 5537 301 222 60 143 chr6 47096287 47096384 -142183170 + L2 LINE L2 2451 2522 -792 1036 151 7 0 chr6 47096384 47096536 -142183018 + FRAM SINE Alu 1 153 -13 301 222 60 143 chr6 47096536 47096654 -142182900 + L2 LINE L2 2522 2648 -666 937 256 127 31 chr6 47096777 47097371 -142182183 + L2 LINE L2 2656 3306 -7 494 250 14 66 chr6 47097544 47097730 -142181824 + MIR3 SINE MIR 12 191 -63 477 0 0 0 chr6 47097867 47097920 -142181634 + (TG)n Simple_repeat Simple_repeat 2 54 0 807 215 24 24 chr6 47098427 47098475 -142181079 - MER3 DNA MER1_type 0 209 162 1931 158 3 7 chr6 47098475 47098778 -142180776 - AluSx SINE Alu -10 302 1 807 215 24 24 chr6 47098778 47098938 -142180616 - MER3 DNA MER1_type -46 163 1 1253 208 24 14 chr6 47099830 47100124 -142179430 - L1ME3 LINE L1 -8 6154 5858 1894 138 11 7 chr6 47100129 47100438 -142179116 - AluJb SINE Alu 0 310 1 1332 192 19 93 chr6 47100475 47100840 -142178714 - MER46C DNA MER2_type 0 338 1 206 214 18 36 chr6 47101401 47101457 -142178097 - L2 LINE L2 -30 3242 3188 1374 129 17 46 chr6 47101651 47101732 -142177822 + AluJo SINE Alu 47 129 -183 2351 113 3 0 chr6 47101732 47102043 -142177511 - AluSp SINE Alu 0 313 2 1374 129 17 46 chr6 47102043 47102201 -142177353 + AluJo SINE Alu 129 279 -33 180 0 0 0 chr6 47102204 47102224 -142177330 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1948 117 4 0 chr6 47102332 47102596 -142176958 - AluSx SINE Alu -47 265 1 24 0 0 0 chr6 47102607 47102631 -142176923 + AT_rich Low_complexity Low_complexity 1 24 0 503 231 113 25 chr6 47102725 47102885 -142176669 + MIR SINE MIR 15 188 -74 2176 116 0 3 chr6 47103451 47103744 -142175810 + AluSc SINE Alu 1 292 -17 385 285 0 42 chr6 47103751 47103895 -142175659 + L1ME4a LINE L1 5687 5824 -297 357 265 88 15 chr6 47103949 47104085 -142175469 - MER103 DNA DNA -2 164 19 308 273 39 23 chr6 47104223 47104351 -142175203 + L1ME4a LINE L1 5934 6063 -58 1151 159 0 6 chr6 47104398 47104574 -142174980 - FAM SINE Alu 0 175 1 292 196 0 0 chr6 47105900 47105951 -142173603 + MIR SINE MIR 98 148 -114 2350 94 7 0 chr6 47106004 47106303 -142173251 + AluSx SINE Alu 1 301 -11 263 214 24 12 chr6 47106304 47106388 -142173166 - L1ME4a LINE L1 -102 6019 5935 641 153 23 8 chr6 47106499 47106630 -142172924 + HSMAR2 DNA Mariner 1 133 -1169 1977 159 0 3 chr6 47106630 47106931 -142172623 + AluJo SINE Alu 1 300 -12 456 116 0 0 chr6 47106996 47107082 -142172472 + (G)n Simple_repeat Simple_repeat 1 86 0 1991 96 48 7 chr6 47107352 47107671 -142171883 + AluSq SINE Alu 2 331 0 289 296 71 102 chr6 47107736 47107802 -142171752 - MIR SINE MIR -50 212 146 2119 99 39 0 chr6 47107802 47108086 -142171468 + AluSp SINE Alu 1 295 -18 289 296 71 102 chr6 47108086 47108215 -142171339 - MIR SINE MIR -116 146 23 2280 93 0 30 chr6 47108899 47109200 -142170354 - AluSg SINE Alu -18 292 1 2014 111 17 21 chr6 47109734 47110023 -142169531 + AluSx SINE Alu 1 288 -24 1503 112 4 0 chr6 47110738 47110970 -142168584 + HSMAR2 DNA Mariner 1069 1301 -1 252 274 21 21 chr6 47110990 47111085 -142168469 - L1ME4a LINE L1 -335 5786 5692 280 262 79 11 chr6 47111977 47112133 -142167421 - MIR SINE MIR -62 146 21 2332 121 0 0 chr6 47112788 47113095 -142166459 + AluSx SINE Alu 1 307 -5 454 167 13 13 chr6 47113216 47113294 -142166260 + MIR SINE MIR 9 86 -176 1917 161 0 3 chr6 47113320 47113612 -142165942 + AluJb SINE Alu 5 295 -17 2400 97 0 0 chr6 47113612 47113922 -142165632 + AluSg SINE Alu 1 310 0 911 223 119 29 chr6 47114408 47114718 -142164836 - MER46C DNA MER2_type 0 338 1 2307 87 7 0 chr6 47114864 47115153 -142164401 + AluSp SINE Alu 1 291 -22 414 0 0 0 chr6 47115154 47115200 -142164354 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 1372 176 7 32 chr6 47115599 47115757 -142163797 - L1M3 LINE L1 -361 5822 5672 2271 84 3 3 chr6 47115757 47116055 -142163499 - AluY SINE Alu -13 298 1 1372 176 7 32 chr6 47116055 47116175 -142163379 - L1M3 LINE L1 -511 5672 5551 354 335 81 11 chr6 47116313 47116498 -142163056 + L3 LINE CR1 584 781 -796 1652 152 24 35 chr6 47116611 47116810 -142162744 - AluJb SINE Alu -11 301 104 2205 136 0 7 chr6 47116810 47117120 -142162434 + AluSx SINE Alu 1 308 -4 1652 152 24 35 chr6 47117120 47117209 -142162345 - AluJb SINE Alu -208 104 16 1607 182 86 57 chr6 47117215 47117703 -142161851 - L1ME1 LINE L1 -223 5943 5442 2142 134 7 7 chr6 47117708 47118006 -142161548 - AluSx SINE Alu -12 300 3 499 299 167 23 chr6 47118012 47118360 -142161194 + L3 LINE CR1 1091 1488 -89 701 119 0 34 chr6 47118605 47118723 -142160831 + FLAM_C SINE Alu 28 141 -2 2612 49 0 3 chr6 47118799 47119103 -142160451 + AluY SINE Alu 2 304 -7 463 261 32 6 chr6 47119119 47119276 -142160278 + L1MC4a LINE L1 5732 5892 -1916 2209 105 10 7 chr6 47119336 47119640 -142159914 - AluSg SINE Alu -5 305 1 2433 97 3 0 chr6 47120547 47120857 -142158697 + AluSq SINE Alu 1 311 -2 363 96 0 0 chr6 47120867 47120919 -142158635 + (GGGA)n Simple_repeat Simple_repeat 4 55 0 289 264 191 9 chr6 47122161 47122271 -142157283 - MIR3 SINE MIR -9 199 70 319 295 152 57 chr6 47122708 47122952 -142156602 + L1ME4a LINE L1 5449 5715 -2093 1864 112 19 11 chr6 47123063 47123331 -142156223 - AluSx SINE Alu -12 300 31 1285 123 5 0 chr6 47123502 47123705 -142155849 - L1MD3 LINE L1 -8 7987 7784 1619 150 6 29 chr6 47123706 47123868 -142155686 - Charlie5 DNA MER1_type -31 2593 2429 2275 128 0 3 chr6 47123868 47124181 -142155373 - AluSx SINE Alu 0 312 1 1619 150 6 29 chr6 47124181 47124364 -142155190 - Charlie5 DNA MER1_type -195 2429 2256 332 160 160 92 chr6 47124394 47124430 -142155124 - MER3 DNA MER1_type 0 162 130 2435 71 7 3 chr6 47124430 47124726 -142154828 + AluSp SINE Alu 1 297 -16 332 160 160 92 chr6 47124726 47124808 -142154746 - MER3 DNA MER1_type -32 130 36 203 300 22 44 chr6 47125083 47125173 -142154381 - MIR SINE MIR -72 190 103 205 263 106 75 chr6 47125178 47125338 -142154216 + MIR3 SINE MIR 35 199 -9 246 116 0 0 chr6 47125415 47125458 -142154096 + (GA)n Simple_repeat Simple_repeat 1 43 0 460 276 93 34 chr6 47126086 47126296 -142153258 - MIR SINE MIR -7 255 36 584 234 63 24 chr6 47126451 47126703 -142152851 + L1MEc LINE L1 2120 2381 -4015 340 311 66 0 chr6 47126875 47126981 -142152573 + MIR SINE MIR 76 188 -74 914 113 8 0 chr6 47128178 47128311 -142151243 + AluSp/q SINE Alu 176 309 -4 809 158 0 8 chr6 47128320 47128447 -142151107 + FLAM_C SINE Alu 1 126 -17 701 190 33 0 chr6 47128468 47128589 -142150965 - FLAM_A SINE Alu -6 127 3 274 200 27 27 chr6 47128592 47128702 -142150852 + L1ME4a LINE L1 6012 6121 0 1592 84 0 0 chr6 47128790 47128980 -142150574 - AluSq SINE Alu -15 298 109 2447 71 0 23 chr6 47128981 47129290 -142150264 - AluY SINE Alu -7 304 3 2410 84 0 3 chr6 47129292 47129591 -142149963 - AluSg SINE Alu -12 298 1 3886 123 21 62 chr6 47129591 47129904 -142149650 + HSMAR2 DNA Mariner 323 647 -655 2379 97 0 19 chr6 47129904 47130213 -142149341 + AluSx SINE Alu 4 306 -6 3886 123 21 62 chr6 47130213 47130365 -142149189 + HSMAR2 DNA Mariner 647 804 -498 2211 130 0 0 chr6 47130365 47130664 -142148890 + AluJb SINE Alu 1 299 -13 2486 87 0 3 chr6 47130668 47130980 -142148574 + AluSq SINE Alu 1 311 -2 3886 123 21 62 chr6 47130980 47131233 -142148321 + HSMAR2 DNA Mariner 807 1017 -285 654 136 19 0 chr6 47131252 47131355 -142148199 - AluSg/x SINE Alu -7 303 199 1317 91 5 14 chr6 47131470 47131679 -142147875 + L1MA2 LINE L1 6098 6304 0 2138 106 0 3 chr6 47131693 47132010 -142147544 + AluSx SINE Alu 1 316 0 817 183 0 0 chr6 47132092 47132218 -142147336 + AluJb SINE Alu 1 126 -186 2043 130 7 10 chr6 47132228 47132529 -142147025 + AluJo SINE Alu 1 300 -12 411 284 151 46 chr6 47132541 47132759 -142146795 - MIR SINE MIR -20 242 2 185 286 0 29 chr6 47132790 47132860 -142146694 - MIR SINE MIR -1 261 194 2250 88 14 0 chr6 47133032 47133317 -142146237 + AluSx SINE Alu 12 300 -12 310 332 35 19 chr6 47133369 47133549 -142146005 - MIR SINE MIR -41 221 35 857 233 123 23 chr6 47134182 47134400 -142145154 - MER46C DNA MER2_type -6 332 74 2096 94 4 7 chr6 47134400 47134675 -142144879 + AluSx SINE Alu 3 276 -36 857 233 123 23 chr6 47134675 47134757 -142144797 - MER46C DNA MER2_type -264 74 2 699 222 48 20 chr6 47134793 47135008 -142144546 - MIR SINE MIR -46 216 2 659 311 50 25 chr6 47135269 47135408 -142144146 + MIR SINE MIR 2 136 -126 2060 133 27 0 chr6 47135408 47135700 -142143854 + AluSg SINE Alu 1 300 -10 2237 78 61 0 chr6 47135700 47135993 -142143561 + AluY SINE Alu 1 311 0 659 311 50 25 chr6 47135701 47136091 -142143463 + MIR SINE MIR 136 245 -17 1478 195 11 4 chr6 47136195 47136467 -142143087 - AluJo SINE Alu -38 274 1 287 304 76 0 chr6 47136506 47136598 -142142956 + L2 LINE L2 3174 3272 0 233 213 0 0 chr6 47136885 47136932 -142142622 - U6 snRNA snRNA 0 107 61 1886 146 14 7 chr6 47137109 47137396 -142142158 + AluSx SINE Alu 10 298 -14 429 126 241 0 chr6 47137427 47137514 -142142040 + FLAM_A SINE Alu 22 129 -13 2224 133 0 0 chr6 47137516 47137809 -142141745 + AluSx SINE Alu 1 293 -19 2344 87 3 10 chr6 47137809 47138120 -142141434 + AluSc SINE Alu 1 309 0 669 241 18 18 chr6 47138120 47138286 -142141268 - LTR67 LTR ERVL -367 190 25 258 200 20 0 chr6 47138366 47138416 -142141138 + L2 LINE L2 3200 3250 -22 2567 65 0 3 chr6 47138857 47139166 -142140388 - AluY SINE Alu -3 308 1 26 82 0 0 chr6 47140051 47140112 -142139442 + GC_rich Low_complexity Low_complexity 1 61 0 435 228 88 22 chr6 47141198 47141334 -142138220 + MIR SINE MIR 7 151 -111 1336 134 0 5 chr6 47141343 47141554 -142138000 - AluSg/x SINE Alu 0 306 97 1899 98 0 0 chr6 47141554 47141798 -142137756 - AluSq SINE Alu -69 244 1 456 366 91 0 chr6 47142157 47142389 -142137165 + MIR SINE MIR 2 254 -8 319 264 123 0 chr6 47142403 47142509 -142137045 + L2 LINE L2 3154 3272 0 364 247 151 36 chr6 47143061 47143227 -142136327 + L1M2 LINE L1 1767 1951 -4898 298 202 101 0 chr6 47143546 47143635 -142135919 + L1ME2 LINE L1 6067 6164 0 2123 145 0 0 chr6 47143660 47143956 -142135598 + AluSx SINE Alu 1 296 -16 642 148 9 0 chr6 47143971 47144079 -142135475 + FLAM_C SINE Alu 2 110 -33 333 224 64 24 chr6 47144127 47144252 -142135302 + L1MC5 LINE L1 7797 7926 -35 275 306 81 16 chr6 47144312 47144436 -142135118 - MIR3 SINE MIR -29 179 48 313 284 22 60 chr6 47144763 47144897 -142134657 + MIR SINE MIR 56 184 -78 1188 116 48 5 chr6 47144901 47145090 -142134464 + L1PA2 LINE L1 5959 6155 0 2334 102 6 6 chr6 47145109 47145422 -142134132 + AluSp SINE Alu 1 313 0 2064 127 3 22 chr6 47145424 47145739 -142133815 + AluSq SINE Alu 1 309 -4 1889 169 0 33 chr6 47145854 47146019 -142133535 - AluJo SINE Alu -20 292 140 2520 71 3 3 chr6 47146019 47146330 -142133224 - AluY SINE Alu 0 311 1 1889 169 0 33 chr6 47146330 47146466 -142133088 - AluJo SINE Alu -172 140 1 735 252 134 10 chr6 47146474 47146780 -142132774 - HAL1 LINE L1 -475 2032 1689 2437 93 6 3 chr6 47146872 47147184 -142132370 + AluSp SINE Alu 1 313 0 1108 165 11 0 chr6 47147189 47147365 -142132189 + AluJo SINE Alu 121 298 -14 236 245 277 0 chr6 47147365 47147459 -142132095 + MER5A DNA MER1_type 67 186 -3 2172 119 0 28 chr6 47148029 47148347 -142131207 - AluSc SINE Alu 0 309 1 2547 80 0 0 chr6 47148364 47148675 -142130879 - AluY SINE Alu 0 311 1 233 323 21 0 chr6 47148888 47148981 -142130573 + L1ME LINE L1 5719 5813 -308 559 231 146 38 chr6 47149038 47149451 -142130103 - LTR33 LTR ERVL -5 516 9 885 186 116 0 chr6 47149451 47149650 -142129904 + MER39 LTR ERV1 1 222 -485 1524 75 0 47 chr6 47149652 47149866 -142129688 + AluSq SINE Alu 1 204 -109 297 123 0 41 chr6 47149973 47150046 -142129508 + (GGGGA)n Simple_repeat Simple_repeat 1 70 0 1712 145 134 6 chr6 47150053 47150126 -142129428 + MER39 LTR ERV1 209 271 -436 2083 129 3 7 chr6 47150126 47150421 -142129133 - AluSx SINE Alu -18 294 1 1712 145 134 6 chr6 47150421 47150705 -142128849 + MER39 LTR ERV1 271 612 -95 1929 140 6 16 chr6 47150706 47151020 -142128534 + AluJo SINE Alu 1 311 -1 863 176 0 13 chr6 47151030 47151189 -142128365 + FAM SINE Alu 1 46 -3 2500 37 3 50 chr6 47151201 47151523 -142128031 - AluY SINE Alu -4 307 1 309 227 237 0 chr6 47151663 47151760 -142127794 - MIR3 SINE MIR -54 154 35 490 183 0 0 chr6 47152980 47153062 -142126492 + AluJ/FLAM SINE Alu 2 83 -229 2312 116 7 0 chr6 47153621 47153931 -142125623 + AluSx SINE Alu 1 312 0 200 196 87 0 chr6 47153947 47153993 -142125561 + MIR SINE MIR 202 251 -11 268 331 140 0 chr6 47154073 47154230 -142125324 + L2 LINE L2 2879 3057 -256 2323 85 3 16 chr6 47155111 47155416 -142124138 + AluSx SINE Alu 1 301 -11 2087 143 0 13 chr6 47155422 47155729 -142123825 + AluJo SINE Alu 7 309 -3 444 111 61 50 chr6 47155765 47155864 -142123690 + FLAM_A SINE Alu 42 141 -1 442 231 65 81 chr6 47155907 47155962 -142123592 + MIR SINE MIR 70 124 -138 749 233 0 0 chr6 47155962 47156095 -142123459 - FLAM_C SINE Alu 0 133 1 442 231 65 81 chr6 47156095 47156225 -142123329 + MIR SINE MIR 124 252 -10 299 320 10 10 chr6 47156573 47156670 -142122884 - MIR3 SINE MIR -23 185 89 625 206 0 14 chr6 47156675 47156816 -142122738 + MIR3 SINE MIR 53 191 -17 258 56 0 0 chr6 47156868 47156904 -142122650 + (TG)n Simple_repeat Simple_repeat 2 37 0 435 156 0 0 chr6 47156905 47156969 -142122585 - AluSg/x SINE Alu -33 279 216 343 228 0 65 chr6 47157070 47157162 -142122392 - MER5A DNA MER1_type -100 89 4 276 109 65 0 chr6 47157182 47157228 -142122326 - MIR SINE MIR -66 142 94 2425 71 0 0 chr6 47158070 47158365 -142121189 - AluSx SINE Alu -17 295 1 554 132 86 0 chr6 47158365 47158475 -142121079 - L1MB3 LINE L1 -252 5926 5804 * 744 275 46 44 chr6 47158472 47158539 -142121015 + L1ME LINE L1 768 833 -5237 7288 127 52 38 chr6 47158539 47159799 -142119755 - MER52C LTR ERV1 0 1278 1 744 275 46 44 chr6 47159799 47160246 -142119308 + L1ME LINE L1 833 1208 -4862 2120 107 4 0 chr6 47160392 47160663 -142118891 - AluSx SINE Alu -17 295 24 676 191 0 85 chr6 47160715 47160818 -142118736 - AluJo/FRAM SINE Alu -30 282 193 2325 90 3 7 chr6 47160818 47161117 -142118437 - AluSx SINE Alu -14 298 1 676 191 0 85 chr6 47161117 47161154 -142118400 - AluJo/FRAM SINE Alu -119 193 154 955 180 0 6 chr6 47161299 47161466 -142118088 - AluJb SINE Alu -10 302 137 459 211 13 122 chr6 47162594 47162750 -142116804 + MIR SINE MIR 119 257 -5 2281 97 0 0 chr6 47162903 47163193 -142116361 + AluSc SINE Alu 1 290 -19 1781 125 19 106 chr6 47163204 47163516 -142116038 + AluJb SINE Alu 7 291 -21 213 39 0 0 chr6 47163684 47163710 -142115844 + (A)n Simple_repeat Simple_repeat 1 26 0 1205 74 0 19 chr6 47165848 47166010 -142113544 + AluY SINE Alu 1 159 -152 958 70 0 0 chr6 47166111 47166225 -142113329 - AluSq/x SINE Alu -198 114 1 2127 141 7 0 chr6 47166402 47166707 -142112847 - AluSx SINE Alu -5 307 1 190 280 86 11 chr6 47166766 47166859 -142112695 + L2 LINE L2 2520 2619 -695 2481 81 0 7 chr6 47166891 47167199 -142112355 + AluSq SINE Alu 1 306 -7 300 221 105 0 chr6 47167202 47167297 -142112257 - L2 LINE L2 -9 3304 3200 521 273 82 16 chr6 47167696 47167879 -142111675 - MIR SINE MIR -39 223 29 1337 104 16 0 chr6 47167991 47168174 -142111380 - AluSg/x SINE Alu -1 309 124 2268 107 23 0 chr6 47168187 47168486 -142111068 - AluSg SINE Alu -2 308 3 377 233 111 0 chr6 47168783 47168873 -142110681 - L2 LINE L2 -1099 2215 2116 936 159 46 0 chr6 47168876 47169027 -142110527 - AluJo SINE Alu -19 293 136 857 261 124 18 chr6 47169029 47169312 -142110242 - L2 LINE L2 -1190 2124 1812 343 226 0 113 chr6 47169330 47169389 -142110165 + MER2 DNA MER2_type 5 48 -297 728 164 0 79 chr6 47169389 47169529 -142110025 - AluJo SINE Alu -173 129 1 343 226 0 113 chr6 47169529 47169575 -142109979 + MER2 DNA MER2_type 48 98 -247 280 105 0 0 chr6 47169575 47169613 -142109941 + Alu SINE Alu 2 39 -263 277 267 12 47 chr6 47169715 47169801 -142109753 - MIR3 SINE MIR -119 89 7 892 245 33 17 chr6 47169854 47170095 -142109459 + MIR SINE MIR 16 260 -2 1429 141 156 34 chr6 47170160 47170300 -142109254 + AluJo SINE Alu 1 122 -180 1945 151 6 3 chr6 47170300 47170611 -142108943 + AluSp SINE Alu 1 312 -1 1429 141 156 34 chr6 47170611 47170739 -142108815 + AluJo SINE Alu 122 302 0 288 0 0 0 chr6 47170748 47170780 -142108774 + (TA)n Simple_repeat Simple_repeat 2 33 0 1948 134 3 33 chr6 47170891 47171196 -142108358 + AluSx SINE Alu 5 300 -12 643 74 25 66 chr6 47171196 47171318 -142108236 + MER2 DNA MER2_type 89 205 -140 1760 186 10 3 chr6 47171319 47171626 -142107928 - AluJb SINE Alu -3 309 1 2410 101 0 0 chr6 47171719 47172027 -142107527 - AluSx SINE Alu -4 308 1 2318 108 3 10 chr6 47172064 47172378 -142107176 - AluSx SINE Alu 0 312 1 391 169 42 0 chr6 47172378 47172449 -142107105 + MER2 DNA MER2_type 270 343 -2 245 284 0 0 chr6 47172452 47172519 -142107035 - L2 LINE L2 -1518 1796 1730 655 111 10 0 chr6 47172520 47172619 -142106935 + MSTD LTR MaLR 1 100 -296 930 99 8 0 chr6 47172619 47172740 -142106814 + AluY SINE Alu 1 122 -189 225 0 0 0 chr6 47172885 47172910 -142106644 + (A)n Simple_repeat Simple_repeat 1 25 0 237 33 0 0 chr6 47173001 47173031 -142106523 + (TG)n Simple_repeat Simple_repeat 2 31 0 2287 104 0 0 chr6 47173768 47174066 -142105488 + AluSg SINE Alu 1 298 -12 2439 92 3 6 chr6 47174096 47174410 -142105144 + AluSq SINE Alu 1 313 0 2305 96 0 0 chr6 47175098 47175391 -142104163 + AluY SINE Alu 1 293 -18 22 0 0 0 chr6 47175833 47175855 -142103699 + AT_rich Low_complexity Low_complexity 1 22 0 2466 97 0 0 chr6 47176074 47176383 -142103171 + AluSg SINE Alu 1 309 -1 1977 130 67 0 chr6 47176402 47176687 -142102867 - AluSg SINE Alu -6 304 1 502 232 171 18 chr6 47176693 47176857 -142102697 - MER5A DNA MER1_type 0 189 1 2313 112 0 7 chr6 47177062 47177367 -142102187 - AluSx SINE Alu -9 303 1 2273 93 0 0 chr6 47177547 47177837 -142101717 + AluSc SINE Alu 3 292 -17 1499 185 60 11 chr6 47177983 47178147 -142101407 - AluJo SINE Alu -17 295 110 2160 101 35 3 chr6 47178147 47178435 -142101119 - AluSg SINE Alu -13 297 1 1499 185 60 11 chr6 47178435 47178551 -142101003 - AluJo SINE Alu -202 110 1 2276 117 0 22 chr6 47178755 47179071 -142100483 + AluSx SINE Alu 1 309 -3 1401 86 0 0 chr6 47179475 47179649 -142099905 + AluSp SINE Alu 133 306 -7 212 322 14 70 chr6 47179701 47179844 -142099710 + L2 LINE L2 2919 3053 -219 2333 72 20 23 chr6 47179876 47180181 -142099373 - AluSp SINE Alu -9 304 1 2302 94 7 0 chr6 47180277 47180574 -142098980 - AluSq SINE Alu -13 300 2 254 284 49 0 chr6 47181661 47181742 -142097812 - L2 LINE L2 0 3313 3229 1275 198 106 0 chr6 47181756 47182029 -142097525 - AluJb SINE Alu -10 302 1 2357 76 3 6 chr6 47182093 47182407 -142097147 - AluSq SINE Alu 0 313 1 190 0 0 62 chr6 47182410 47182442 -142097112 + (TTCCC)n Simple_repeat Simple_repeat 3 32 0 369 62 0 0 chr6 47182443 47182491 -142097063 + (TC)n Simple_repeat Simple_repeat 1 48 0 1571 140 48 41 chr6 47182491 47182784 -142096770 - AluSx SINE Alu -17 295 1 1964 141 0 0 chr6 47182815 47183113 -142096441 - AluJb SINE Alu -14 298 1 2121 110 3 7 chr6 47183120 47183428 -142096126 - AluSq SINE Alu -6 307 1 403 244 137 8 chr6 47183690 47183821 -142095733 - MIR SINE MIR -93 169 22 2144 100 3 3 chr6 47183847 47184146 -142095408 + AluSq SINE Alu 1 299 -14 2107 105 7 3 chr6 47184281 47184576 -142094978 - AluSq SINE Alu -17 296 1 449 157 25 25 chr6 47184579 47184700 -142094854 + CT-rich Low_complexity Low_complexity 2 122 0 1837 148 3 10 chr6 47184712 47185017 -142094537 + AluJb SINE Alu 1 303 -9 1659 167 4 4 chr6 47185020 47185295 -142094259 - AluJb SINE Alu -35 277 3 907 186 6 23 chr6 47185314 47185486 -142094068 - MLT1B LTR MaLR 0 390 222 261 0 0 0 chr6 47185483 47185511 -142094043 + tRNA-Cys-TGC tRNA tRNA 11 38 -37 * 1321 141 11 53 chr6 47185537 47185800 -142093754 - AluJo SINE Alu 0 312 61 2175 108 0 7 chr6 47185800 47186107 -142093447 - AluSx SINE Alu -7 305 1 1063 114 23 17 chr6 47186109 47186284 -142093270 - MLT1B LTR MaLR -214 176 1 240 322 71 55 chr6 47186373 47186505 -142093049 - L2 LINE L2 -5 3267 3130 909 186 57 11 chr6 47186505 47186682 -142092872 - MER5A DNA MER1_type -4 185 1 240 322 71 55 chr6 47186682 47186732 -142092822 - L2 LINE L2 -142 3130 3082 313 287 46 19 chr6 47186969 47187077 -142092477 + MIR SINE MIR 46 156 -106 644 178 0 9 chr6 47187080 47187187 -142092367 + FLAM_C SINE Alu 11 116 -27 563 198 0 0 chr6 47187205 47187316 -142092238 - FLAM_C SINE Alu -22 121 11 1789 162 7 0 chr6 47187513 47187803 -142091751 + AluJb SINE Alu 1 292 -20 758 148 25 0 chr6 47187835 47187957 -142091597 - FLAM_C SINE Alu -17 126 2 288 316 26 43 chr6 47187962 47188079 -142091475 + L2 LINE L2 3156 3270 -2 2218 91 0 0 chr6 47188122 47188418 -142091136 + AluSg SINE Alu 1 296 -14 189 129 32 0 chr6 47188761 47188792 -142090762 + MIR SINE MIR 81 112 -150 211 235 0 0 chr6 47188894 47188945 -142090609 + MIR SINE MIR 211 261 -1 2178 64 30 3 chr6 47189064 47189360 -142090194 - AluY SINE Alu -7 304 1 2415 56 0 0 chr6 47189362 47189665 -142089889 - AluY SINE Alu -8 303 1 1619 203 0 3 chr6 47189666 47189971 -142089583 - AluJo SINE Alu -6 306 3 2102 110 0 7 chr6 47189982 47190291 -142089263 - AluSg SINE Alu -3 307 1 1801 120 11 7 chr6 47190358 47190668 -142088886 + AluSx SINE Alu 1 311 0 696 172 9 9 chr6 47190809 47190925 -142088629 + FLAM_A SINE Alu 1 116 -17 2343 64 0 3 chr6 47190926 47191221 -142088333 - AluSc SINE Alu -15 294 1 2348 74 3 0 chr6 47191233 47191532 -142088022 - AluSp SINE Alu -13 300 1 2170 100 3 0 chr6 47191687 47191978 -142087576 + AluSx SINE Alu 1 292 -20 2184 95 0 0 chr6 47192906 47193202 -142086352 + AluSg SINE Alu 1 296 -14 2311 88 0 0 chr6 47193297 47193602 -142085952 + AluSg SINE Alu 1 305 -5 1795 144 0 16 chr6 47193852 47194158 -142085396 - AluJb SINE Alu -11 301 1 601 194 212 18 chr6 47194223 47194388 -142085166 + MIR SINE MIR 64 260 -2 351 44 0 0 chr6 47194757 47194802 -142084752 + (CA)n Simple_repeat Simple_repeat 1 45 0 2122 95 14 0 chr6 47195210 47195504 -142084050 + AluSc SINE Alu 1 298 -11 2203 110 0 0 chr6 47195532 47195841 -142083713 + AluY SINE Alu 1 309 -2 1383 147 12 94 chr6 47195957 47195998 -142083556 + AluJb SINE Alu 1 44 -268 1867 118 3 32 chr6 47195998 47196312 -142083242 + AluSx SINE Alu 1 305 -7 1383 147 12 94 chr6 47196312 47196417 -142083137 + AluJb SINE Alu 44 156 -156 2321 67 0 0 chr6 47196417 47196717 -142082837 + AluY SINE Alu 1 300 -11 1383 147 12 94 chr6 47196717 47196909 -142082645 + AluJb SINE Alu 156 312 0 825 98 81 0 chr6 47196919 47197042 -142082512 - AluJo SINE Alu -177 135 3 2154 93 10 6 chr6 47197071 47197382 -142082172 + AluSx SINE Alu 1 312 0 2471 59 0 0 chr6 47198305 47198609 -142080945 + AluY SINE Alu 1 304 -7 711 295 94 8 chr6 47198661 47198895 -142080659 - MIR SINE MIR -1 261 8 239 147 0 0 chr6 47199018 47199052 -142080502 + Alu SINE Alu 1 34 -268 2292 86 0 13 chr6 47199054 47199357 -142080197 + AluSg SINE Alu 1 299 -11 221 305 152 0 chr6 47199771 47199876 -142079678 + MIR SINE MIR 30 150 -112 26 0 0 0 chr6 47201189 47201215 -142078339 + GC_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr6 47201262 47201308 -142078246 + GC_rich Low_complexity Low_complexity 1 46 0 233 257 40 20 chr6 47201316 47201464 -142078090 + (CCCCG)n Simple_repeat Simple_repeat 4 154 0 288 137 0 0 chr6 47201542 47201593 -142077961 + (CAG)n Simple_repeat Simple_repeat 3 53 0 204 172 0 0 chr6 47201748 47201806 -142077748 + (CCCCAG)n Simple_repeat Simple_repeat 3 60 0 27 49 0 0 chr6 47202201 47202242 -142077312 + GC_rich Low_complexity Low_complexity 1 41 0 201 39 0 0 chr6 47206302 47206328 -142073226 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 410 146 244 0 chr6 47207025 47207107 -142072447 - MER3 DNA MER1_type -107 102 1 1690 111 27 57 chr6 47207294 47207591 -142071963 - AluSg SINE Alu -21 289 2 1951 108 17 3 chr6 47207595 47207890 -142071664 - AluSx SINE Alu -13 299 1 977 141 12 18 chr6 47207974 47208137 -142071417 + AluJo SINE Alu 105 266 -46 297 0 0 0 chr6 47208152 47208185 -142071369 + (CA)n Simple_repeat Simple_repeat 2 34 0 870 227 113 20 chr6 47208220 47208555 -142070999 - Charlie7 DNA MER1_type -2076 536 63 195 218 308 26 chr6 47209202 47209280 -142070274 + MIR SINE MIR 13 112 -150 1685 163 0 3 chr6 47209431 47209741 -142069813 + AluJb SINE Alu 5 313 0 2164 88 0 7 chr6 47209962 47210259 -142069295 + AluY SINE Alu 1 295 -16 1906 118 36 0 chr6 47210305 47210585 -142068969 + AluSx SINE Alu 1 290 -22 570 30 109 0 chr6 47210585 47210786 -142068768 + (TA)n Simple_repeat Simple_repeat 1 223 0 1982 146 0 0 chr6 47210792 47211086 -142068468 - AluSx SINE Alu -18 294 1 1808 134 38 0 chr6 47211088 47211379 -142068175 - AluSq SINE Alu -11 302 1 736 185 0 23 chr6 47211385 47211515 -142068039 - FLAM_C SINE Alu -6 127 1 239 303 0 0 chr6 47211590 47211656 -142067898 - L2 LINE L2 -205 3067 3002 1067 234 22 65 chr6 47211748 47211903 -142067651 + MER58B DNA MER1_type 1 161 -2259 1708 137 47 37 chr6 47211903 47212203 -142067351 + AluJo SINE Alu 1 303 -9 1930 138 7 0 chr6 47212205 47212501 -142067053 + AluSx SINE Alu 1 298 -14 243 0 0 0 chr6 47212501 47212528 -142067026 + (TA)n Simple_repeat Simple_repeat 1 27 0 1067 234 22 65 chr6 47212528 47212723 -142066831 + MER58B DNA MER1_type 160 340 -1 1403 153 39 105 chr6 47212754 47212937 -142066617 - AluJb SINE Alu 0 312 159 207 69 0 0 chr6 47212937 47212966 -142066588 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1403 153 39 105 chr6 47212966 47213116 -142066438 - AluJb SINE Alu -153 159 1 1025 72 92 0 chr6 47213138 47213291 -142066263 - AluSg/x SINE Alu -13 297 131 230 0 0 32 chr6 47213291 47213322 -142066232 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2051 85 0 51 chr6 47213322 47213617 -142065937 - AluY SINE Alu -31 280 1 507 201 24 218 chr6 47213662 47213812 -142065742 - MIR SINE MIR -1 261 84 2031 124 6 13 chr6 47213812 47214126 -142065428 - AluSx SINE Alu 0 312 1 697 163 16 23 chr6 47214128 47214257 -142065297 - FLAM_A SINE Alu -5 128 1 507 201 24 218 chr6 47214257 47214392 -142065162 - MIR SINE MIR -179 83 29 351 0 0 0 chr6 47215000 47215039 -142064515 + (TA)n Simple_repeat Simple_repeat 2 40 0 1936 114 24 3 chr6 47215039 47215320 -142064234 - AluSq SINE Alu -23 290 1 1888 125 35 0 chr6 47215493 47215782 -142063772 - AluSx SINE Alu -13 299 1 1387 146 14 51 chr6 47215805 47215935 -142063619 - AluJo SINE Alu -47 265 149 2330 61 0 7 chr6 47215935 47216231 -142063323 - AluY SINE Alu -17 294 1 1387 146 14 51 chr6 47216231 47216375 -142063179 - AluJo SINE Alu -163 149 1 761 194 0 0 chr6 47216386 47216510 -142063044 - FLAM_C SINE Alu -8 125 2 2004 106 0 3 chr6 47216593 47216910 -142062644 - AluSx SINE Alu 0 316 1 7143 93 35 8 chr6 47216924 47218043 -142061511 - L1MA2 LINE L1 0 6304 5162 2230 89 3 0 chr6 47218043 47218345 -142061209 - AluSx SINE Alu -9 303 1 382 212 297 80 chr6 47218417 47218794 -142060760 - LTR33 LTR ERVL -7 514 56 26 0 0 0 chr6 47219096 47219122 -142060432 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr6 47219186 47219212 -142060342 + (TC)n Simple_repeat Simple_repeat 2 27 0 855 153 0 0 chr6 47219236 47219373 -142060181 - FLAM_C SINE Alu 0 143 7 330 261 85 88 chr6 47219390 47219515 -142060039 - L1ME4a LINE L1 -224 5897 5773 1668 80 4 25 chr6 47219515 47219562 -142059992 + L1PA14 LINE L1 5928 5974 -187 2211 101 0 0 chr6 47219562 47219858 -142059696 + AluSx SINE Alu 1 296 -16 1668 80 4 25 chr6 47219858 47220047 -142059507 + L1PA14 LINE L1 5974 6159 -2 330 261 85 88 chr6 47220047 47220181 -142059373 - L1ME4a LINE L1 -348 5773 5639 52 41 0 0 chr6 47220181 47220254 -142059300 + AT_rich Low_complexity Low_complexity 1 73 0 1613 198 0 3 chr6 47220257 47220545 -142059009 - AluJo SINE Alu -25 287 1 186 43 0 0 chr6 47220556 47220579 -142058975 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 478 304 0 24 chr6 47220579 47220747 -142058807 + MLT1J LTR MaLR 58 221 -290 2224 107 0 19 chr6 47220823 47221142 -142058412 + AluSq SINE Alu 1 313 0 1744 165 7 10 chr6 47221208 47221505 -142058049 - AluJo SINE Alu -14 298 3 1554 197 7 0 chr6 47221694 47222004 -142057550 + AluJo SINE Alu 1 312 0 1864 130 43 13 chr6 47222143 47222444 -142057110 - AluSx SINE Alu -2 310 1 2054 126 3 0 chr6 47222486 47222788 -142056766 + AluSx SINE Alu 1 303 -9 1578 127 0 44 chr6 47222792 47222965 -142056589 - AluSx SINE Alu 0 306 147 2042 104 0 36 chr6 47222965 47223273 -142056281 - AluSg SINE Alu -13 297 1 1578 127 0 44 chr6 47223273 47223373 -142056181 - AluSx SINE Alu -159 147 44 2267 103 0 3 chr6 47224018 47224329 -142055225 - AluSx SINE Alu -2 310 1 1707 169 22 10 chr6 47224440 47224754 -142054800 - L1MC4a LINE L1 -806 7002 6685 843 185 28 46 chr6 47224749 47224965 -142054589 + L1PB4 LINE L1 2189 2400 -3746 * 6596 33 0 1 chr6 47224965 47225761 -142053793 + L1PA5 LINE L1 5380 6174 0 2138 82 7 0 chr6 47225761 47226075 -142053479 + AluY SINE Alu 1 316 0 2014 183 3 3 chr6 47226097 47226468 -142053086 + L1PB4 LINE L1 2386 2756 -3390 1880 123 14 4 chr6 47226468 47226796 -142052758 - AluSg SINE Alu 0 333 3 602 122 10 20 chr6 47226800 47226898 -142052656 - AluJb SINE Alu -18 294 198 3315 163 22 18 chr6 47226898 47227444 -142052110 + L1PB4 LINE L1 4671 5222 -934 1653 168 12 47 chr6 47227444 47227765 -142051789 + AluJo SINE Alu 1 310 -2 3315 163 22 18 chr6 47227765 47228020 -142051534 + L1PB4 LINE L1 5222 5474 -682 22 0 0 30 chr6 47228022 47228042 -142051512 + AT_rich Low_complexity Low_complexity 1 21 -11 1994 144 51 43 chr6 47228042 47228169 -142051385 + L1PB4 LINE L1 5767 5891 -265 1893 106 57 0 chr6 47228169 47228451 -142051103 + AluSx SINE Alu 2 299 -13 1994 144 51 43 chr6 47228451 47228697 -142050857 + L1PB4 LINE L1 5891 6143 -13 22 0 0 30 chr6 47228697 47228709 -142050845 + AT_rich Low_complexity Low_complexity 21 32 0 2406 64 0 0 chr6 47228719 47229016 -142050538 + AluY SINE Alu 3 299 -12 611 207 0 22 chr6 47229016 47229151 -142050403 - L1MC4 LINE L1 -1265 6777 6646 506 309 45 17 chr6 47229329 47229507 -142050047 + MIR3 SINE MIR 1 183 -25 2043 119 0 0 chr6 47229549 47229844 -142049710 - AluSg SINE Alu -15 295 1 243 246 31 15 chr6 47229845 47229910 -142049644 - MLT1J LTR MaLR -445 66 1 233 269 121 43 chr6 47229910 47230051 -142049503 + MER112 DNA MER1_type 77 228 -32 248 290 39 127 chr6 47230173 47230559 -142048995 + L2 LINE L2 2828 3179 -93 484 278 90 0 chr6 47230564 47230697 -142048857 + MIR SINE MIR 117 261 -1 1849 155 7 0 chr6 47230974 47231277 -142048277 + AluJo SINE Alu 1 305 -7 322 214 12 36 chr6 47231506 47231590 -142047964 - LTR33A LTR ERVL 0 523 442 705 263 47 121 chr6 47231981 47232031 -142047523 + L2 LINE L2 2813 2865 -448 2070 114 0 3 chr6 47232031 47232328 -142047226 - AluSq SINE Alu -13 300 5 705 263 47 121 chr6 47232328 47232814 -142046740 + L2 LINE L2 2865 3309 -4 254 313 83 0 chr6 47232914 47233010 -142046544 + L2 LINE L2 3169 3272 0 860 115 0 101 chr6 47233339 47233487 -142046067 - FLAM_C SINE Alu 0 133 1 583 214 9 6 chr6 47233878 47234231 -142045323 + (CA)n Simple_repeat Simple_repeat 1 354 0 1037 136 0 6 chr6 47234267 47234429 -142045125 + L1PA15 LINE L1 5870 6030 -135 2170 119 0 0 chr6 47234438 47234749 -142044805 + AluSx SINE Alu 1 311 -1 261 128 0 0 chr6 47234750 47234797 -142044757 + L1PA15 LINE L1 6119 6165 0 1513 137 126 11 chr6 47235179 47235449 -142044105 + AluJb SINE Alu 1 301 -1 1636 153 12 58 chr6 47235917 47236107 -142043447 - AluJo SINE Alu 0 312 142 1708 119 48 20 chr6 47236107 47236400 -142043154 - AluSx SINE Alu -11 301 1 1636 153 12 58 chr6 47236400 47236536 -142043018 - AluJo SINE Alu -170 142 1 413 319 72 38 chr6 47236538 47236801 -142042753 + L2 LINE L2 2968 3239 -33 1781 125 60 0 chr6 47237162 47237443 -142042111 + AluSx SINE Alu 1 298 -14 1760 267 67 23 chr6 47237456 47238365 -142041189 - L2 LINE L2 -1 3312 2344 2165 95 0 0 chr6 47238377 47238695 -142040859 - AluSq SINE Alu 0 318 1 26 30 0 0 chr6 47238705 47238738 -142040816 + AT_rich Low_complexity Low_complexity 1 33 0 938 159 13 0 chr6 47238746 47238903 -142040651 + FRAM SINE Alu 4 162 -14 758 208 26 0 chr6 47238908 47239062 -142040492 + MLT1E LTR MaLR 436 593 0 832 145 0 36 chr6 47239117 47239255 -142040299 + FLAM_C SINE Alu 1 133 0 603 288 101 52 chr6 47239265 47239591 -142039963 - MLT1F LTR MaLR -200 342 1 1264 269 114 0 chr6 47239591 47240082 -142039472 - L2 LINE L2 -1012 2302 1756 224 322 122 17 chr6 47240739 47240854 -142038700 + MIR3 SINE MIR 36 162 -46 301 157 0 181 chr6 47240958 47241041 -142038513 + MER20 DNA MER1_type 2 69 -150 2219 92 0 0 chr6 47241072 47241378 -142038176 - AluY SINE Alu -5 306 1 357 43 0 0 chr6 47241379 47241426 -142038128 + (TG)n Simple_repeat Simple_repeat 2 48 0 2113 94 0 0 chr6 47241426 47241712 -142037842 - AluSx SINE Alu -26 286 1 792 220 69 6 chr6 47241729 47241902 -142037652 - MER3 DNA MER1_type -24 185 2 233 246 15 31 chr6 47242952 47243017 -142036537 + MIR SINE MIR 28 91 -117 719 148 8 16 chr6 47243942 47244064 -142035490 - L1MB3 LINE L1 -14 6169 6049 2042 104 4 0 chr6 47244084 47244363 -142035191 - AluSx SINE Alu -32 280 1 1166 150 28 9 chr6 47244363 47244576 -142034978 - L1MB4 LINE L1 -116 6064 5848 219 329 7 51 chr6 47244893 47245030 -142034524 + L2 LINE L2 2550 2680 -634 * 246 338 13 0 chr6 47245028 47245105 -142034449 - L2 LINE L2 -4 3268 3191 1739 97 35 19 chr6 47245179 47245437 -142034117 + AluSg SINE Alu 49 310 0 381 297 92 38 chr6 47245544 47245729 -142033825 - L2 LINE L2 -212 3060 2866 351 0 0 0 chr6 47245831 47245870 -142033684 + (TG)n Simple_repeat Simple_repeat 1 39 0 1963 130 0 0 chr6 47245908 47246215 -142033339 - AluSx SINE Alu 0 307 1 326 313 0 9 chr6 47246216 47246328 -142033226 - L2 LINE L2 -601 2713 2603 1371 204 70 58 chr6 47246510 47246854 -142032700 + MLT1A1 LTR MaLR 1 348 -17 2038 113 0 0 chr6 47246858 47247142 -142032412 + AluSx SINE Alu 11 294 -18 1777 138 7 30 chr6 47248006 47248310 -142031244 - AluSx SINE Alu -11 301 5 633 221 110 0 chr6 47249104 47249258 -142030296 + MER5B DNA MER1_type 2 172 -6 1866 147 31 0 chr6 47249296 47249582 -142029972 + AluJb SINE Alu 1 295 -17 502 225 101 62 chr6 47249767 47249976 -142029578 + L1M4 LINE L1 2952 3168 -2978 331 283 104 86 chr6 47250105 47250384 -142029170 + L1MEd LINE L1 208 491 -5628 343 346 29 43 chr6 47250455 47250663 -142028891 + L1MEd LINE L1 561 765 -5354 1862 140 12 29 chr6 47250785 47251028 -142028526 - L1MB2 LINE L1 -15 6156 5919 2295 84 0 0 chr6 47251028 47251324 -142028230 - AluSx SINE Alu -16 296 1 1862 140 12 29 chr6 47251324 47251422 -142028132 - L1MB2 LINE L1 -252 5919 5821 793 260 69 39 chr6 47251431 47251498 -142028056 + L1MEd LINE L1 817 881 -5238 7099 126 52 38 chr6 47251498 47252758 -142026796 - MER52C LTR ERV1 0 1278 1 793 260 69 39 chr6 47252758 47253205 -142026349 + L1MEd LINE L1 881 1257 -4862 2133 112 3 0 chr6 47253351 47253645 -142025909 - AluSx SINE Alu -17 295 1 1202 190 3 99 chr6 47253647 47253777 -142025777 - AluJo SINE Alu -3 309 168 2255 80 3 7 chr6 47253777 47254076 -142025478 - AluSx SINE Alu -14 298 1 1202 190 3 99 chr6 47254076 47254154 -142025400 - AluJo SINE Alu -144 168 142 2340 81 3 0 chr6 47254154 47254462 -142025092 + AluY SINE Alu 1 309 -2 1202 190 3 99 chr6 47254462 47254584 -142024970 - AluJo SINE Alu -170 142 10 1504 153 19 84 chr6 47254734 47255054 -142024500 + AluSx SINE Alu 1 299 -13 732 268 114 9 chr6 47255507 47255735 -142023819 + MLT1J LTR MaLR 3 254 -257 300 185 25 37 chr6 47255792 47255873 -142023681 + MLT1J1 LTR MaLR 355 434 -12 240 35 0 0 chr6 47256078 47256107 -142023447 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2512 41 0 16 chr6 47256119 47256434 -142023120 - AluY SINE Alu -1 310 1 1767 82 74 26 chr6 47256434 47256703 -142022851 - AluSx SINE Alu -30 282 1 25 65 0 0 chr6 47256760 47256806 -142022748 + AT_rich Low_complexity Low_complexity 1 46 0 247 361 8 33 chr6 47256815 47256937 -142022617 - MIR SINE MIR -112 150 32 216 297 0 16 chr6 47257159 47257223 -142022331 + T-rich Low_complexity Low_complexity 1 63 0 2159 104 3 16 chr6 47257277 47257586 -142021968 - AluSg SINE Alu -5 305 1 837 188 0 0 chr6 47257952 47258085 -142021469 + FLAM_A SINE Alu 1 133 0 2100 116 0 0 chr6 47258259 47258543 -142021011 + AluSx SINE Alu 1 284 -28 2429 63 0 0 chr6 47258553 47258877 -142020677 + AluY SINE Alu 1 324 0 249 188 16 47 chr6 47258877 47258930 -142020624 - MIR SINE MIR -8 254 201 2555 30 3 0 chr6 47259173 47259478 -142020076 - AluY SINE Alu -5 306 1 2298 221 31 38 chr6 47259609 47260161 -142019393 - MLT1E2 LTR MaLR -3 623 76 2011 128 51 56 chr6 47260203 47260593 -142018961 + MLT1B LTR MaLR 1 388 -2 194 61 0 30 chr6 47260776 47260809 -142018745 + (TTG)n Simple_repeat Simple_repeat 2 33 0 195 42 0 0 chr6 47260876 47260900 -142018654 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 1902 118 7 33 chr6 47260903 47261207 -142018347 - AluSx SINE Alu -16 296 1 2199 91 7 0 chr6 47261230 47261527 -142018027 + AluY SINE Alu 1 299 -12 209 87 43 22 chr6 47261565 47261611 -142017943 + (TTATA)n Simple_repeat Simple_repeat 4 50 0 354 194 0 15 chr6 47261752 47261819 -142017735 + MER5A DNA MER1_type 61 126 -63 226 296 0 14 chr6 47261815 47261886 -142017668 + L2 LINE L2 1103 1172 -2142 * 830 74 0 0 chr6 47262203 47262350 -142017204 - AluY SINE Alu 0 319 173 246 305 13 78 chr6 47262367 47262521 -142017033 + L2 LINE L2 1220 1363 -1951 651 299 119 51 chr6 47262607 47263160 -142016394 + L2 LINE L2 1966 2565 -749 1623 187 60 31 chr6 47263160 47263513 -142016041 - MLT1A1 LTR MaLR -2 363 1 651 299 119 51 chr6 47263513 47263564 -142015990 + L2 LINE L2 2565 2611 -703 2317 85 8 92 chr6 47263576 47263603 -142015951 + MER47A DNA MER2_type 1 29 -2294 285 100 0 0 chr6 47263603 47263653 -142015901 + (CTAA)n Simple_repeat Simple_repeat 1 50 0 2317 85 8 92 chr6 47263653 47263940 -142015614 + MER47A DNA MER2_type 29 276 -2047 2088 118 7 0 chr6 47263940 47264237 -142015317 - AluSx SINE Alu -13 299 1 2317 85 8 92 chr6 47264237 47264321 -142015233 + MER47A DNA MER2_type 276 366 0 1073 155 0 0 chr6 47264427 47264595 -142014959 + AluSg/x SINE Alu 137 304 -8 267 303 84 22 chr6 47264601 47264779 -142014775 + HAL1 LINE L1 2318 2506 -1 1582 174 29 68 chr6 47265127 47265197 -142014357 - MLT1A1 LTR MaLR 0 365 294 2372 72 0 3 chr6 47265197 47265503 -142014051 - AluY SINE Alu -6 305 1 1582 174 29 68 chr6 47265503 47265812 -142013742 - MLT1A1 LTR MaLR -71 294 1 32 19 0 37 chr6 47265969 47266007 -142013547 + AT_rich Low_complexity Low_complexity 1 38 -14 837 119 0 8 chr6 47266007 47266125 -142013429 - FLAM_C SINE Alu -16 117 1 32 19 0 37 chr6 47266125 47266140 -142013414 + AT_rich Low_complexity Low_complexity 38 52 0 270 303 184 9 chr6 47266377 47266486 -142013068 + MIR SINE MIR 16 143 -119 1099 247 106 57 chr6 47266518 47267028 -142012526 - MLT1F1 LTR MaLR -8 559 25 294 275 80 22 chr6 47267484 47267622 -142011932 + L1ME2 LINE L1 5765 5910 -254 536 221 0 0 chr6 47268022 47268117 -142011437 + MIR SINE MIR 149 243 -19 456 288 41 72 chr6 47268222 47268602 -142010952 + MLT1L LTR MaLR 1 451 -164 468 174 21 139 chr6 47268656 47268686 -142010868 + HsTC2 DNA Tc2 1710 1742 -156 1963 115 17 7 chr6 47268686 47268981 -142010573 + AluSx SINE Alu 1 298 -14 468 174 21 139 chr6 47268981 47269044 -142010510 + HsTC2 DNA Tc2 1742 1811 -87 1723 137 52 0 chr6 47269044 47269354 -142010200 + AluJb SINE Alu 1 324 0 468 174 21 139 chr6 47269354 47269473 -142010081 + HsTC2 DNA Tc2 1811 1898 0 516 128 0 23 chr6 47269664 47269750 -142009804 + FLAM_C SINE Alu 55 138 -5 338 228 33 11 chr6 47269750 47269842 -142009712 - MLT1L LTR MaLR -14 601 508 1896 205 56 45 chr6 47269968 47270331 -142009223 - MLT1F LTR MaLR 0 542 170 180 0 0 0 chr6 47270331 47270351 -142009203 + (GA)n Simple_repeat Simple_repeat 1 20 0 1896 205 56 45 chr6 47270351 47270523 -142009031 - MLT1F LTR MaLR -372 170 1 375 367 43 50 chr6 47270622 47270922 -142008632 - L1ME LINE L1 -557 5564 5267 1068 146 109 0 chr6 47270937 47271129 -142008425 - AluJo SINE Alu -13 299 87 21 0 0 0 chr6 47271844 47271865 -142007689 + AT_rich Low_complexity Low_complexity 1 21 0 462 216 98 106 chr6 47272654 47272908 -142006646 - MLT1L LTR MaLR -229 386 135 413 325 79 20 chr6 47273059 47273262 -142006292 + MLT1J LTR MaLR 32 246 -265 920 163 0 78 chr6 47273265 47273431 -142006123 - LTR8A LTR ERV1 0 727 575 1148 93 0 0 chr6 47273431 47273602 -142005952 - AluSp SINE Alu 0 305 135 2401 168 81 62 chr6 47273602 47274167 -142005387 - LTR8A LTR ERV1 -151 576 1 277 138 0 86 chr6 47274207 47274265 -142005289 + MLT1J LTR MaLR 415 467 -44 268 95 0 24 chr6 47274407 47274449 -142005105 - LTR67 LTR ERVL -23 534 494 198 118 0 0 chr6 47274607 47274641 -142004913 + (AGCTG)n Simple_repeat Simple_repeat 1 34 0 708 223 53 139 chr6 47274641 47274972 -142004582 - MLT1H LTR MaLR -143 406 105 725 250 38 119 chr6 47275071 47275491 -142004063 - LTR67 LTR ERVL -152 405 20 498 91 0 0 chr6 47275518 47275595 -142003959 + (GGA)n Simple_repeat Simple_repeat 3 79 0 2319 82 3 9 chr6 47275622 47275937 -142003617 - AluSp SINE Alu 0 313 1 231 135 0 0 chr6 47276057 47276094 -142003460 - MLT1L LTR MaLR -36 513 477 229 167 0 24 chr6 47276260 47276302 -142003252 - MLT1J2 LTR MaLR -298 152 112 1792 165 7 7 chr6 47276456 47276753 -142002801 + AluJb SINE Alu 1 297 -15 187 309 106 21 chr6 47276758 47276852 -142002702 - L2 LINE L2 -467 2847 2746 291 293 64 43 chr6 47276866 47277006 -142002548 + L2 LINE L2 2686 2828 -486 1344 228 47 84 chr6 47277076 47277216 -142002338 - LTR16C LTR ERVL -2 489 345 2194 97 0 0 chr6 47277216 47277506 -142002048 - AluSc SINE Alu -6 303 14 1344 228 47 84 chr6 47277506 47277769 -142001785 - LTR16C LTR ERVL -146 345 101 360 359 134 47 chr6 47277872 47278170 -142001384 + L2 LINE L2 2949 3272 0 378 243 159 0 chr6 47278363 47278470 -142001084 + MIR SINE MIR 21 144 -64 1018 218 201 28 chr6 47278625 47279019 -142000535 - MLT1D LTR MaLR 0 505 44 1967 109 3 40 chr6 47279122 47279426 -142000128 - AluSx SINE Alu -19 293 1 870 150 7 0 chr6 47279426 47279566 -141999988 - AluJo SINE Alu -171 141 1 205 290 75 65 chr6 47280188 47280295 -141999259 - L2 LINE L2 -5 3267 3160 318 350 83 13 chr6 47280418 47280575 -141998979 + L1MC4a LINE L1 5859 6026 -1782 2031 106 0 7 chr6 47280659 47280967 -141998587 - AluSc SINE Alu 0 306 1 353 250 48 10 chr6 47280982 47281086 -141998468 + L1MC4 LINE L1 7927 8034 -8 247 32 0 0 chr6 47281381 47281412 -141998142 + (TTTTG)n Simple_repeat Simple_repeat 2 120 0 1778 142 8 0 chr6 47281412 47281672 -141997882 - AluSp SINE Alu -1 314 23 181 261 0 0 chr6 47283071 47283117 -141996437 - MIR SINE MIR -6 256 211 244 277 168 0 chr6 47283454 47283547 -141996007 - L1MC4a LINE L1 -1879 5929 5853 2275 100 0 3 chr6 47283547 47283846 -141995708 - AluSx SINE Alu -14 298 1 244 277 168 0 chr6 47283846 47283907 -141995647 - L1MC4a LINE L1 -1955 5853 5749 1757 204 7 0 chr6 47284014 47284318 -141995236 - AluJo SINE Alu -6 306 1 842 105 35 12 chr6 47284387 47284645 -141994909 + (TA)n Simple_repeat Simple_repeat 1 264 0 389 240 99 0 chr6 47284721 47284842 -141994712 - HAL1b LINE L1 -422 926 794 424 282 122 56 chr6 47285108 47285321 -141994233 - HAL1b LINE L1 -641 707 481 1494 155 33 8 chr6 47285357 47285602 -141993952 - AluJo SINE Alu -51 261 11 1236 282 15 13 chr6 47285820 47286210 -141993344 - L1ME3A LINE L1 -208 5962 5572 307 314 40 25 chr6 47286290 47286431 -141993123 - MIR SINE MIR -56 152 11 2343 101 7 0 chr6 47287253 47287561 -141991993 + AluSq SINE Alu 1 310 -3 2377 125 25 59 chr6 47287951 47288115 -141991439 + L1MC1 LINE L1 5910 6078 -255 2170 106 0 0 chr6 47288115 47288427 -141991127 + AluSx SINE Alu 2 313 0 2377 125 25 59 chr6 47288427 47288700 -141990854 + L1MC1 LINE L1 6078 6333 0 180 0 0 0 chr6 47288933 47288953 -141990601 + (T)n Simple_repeat Simple_repeat 1 20 0 524 239 34 0 chr6 47288963 47289080 -141990474 + L2 LINE L2 3188 3308 -5 1851 160 17 0 chr6 47289155 47289448 -141990106 - AluJb SINE Alu -14 298 1 1792 127 3 84 chr6 47289448 47289771 -141989783 - AluJb SINE Alu -15 297 1 630 260 135 87 chr6 47289888 47290303 -141989251 + MLT1L LTR MaLR 1 435 -180 457 279 64 7 chr6 47291603 47291743 -141987811 + MIR SINE MIR 65 212 -50 2133 111 4 4 chr6 47291856 47292136 -141987418 + AluSx SINE Alu 5 284 -28 388 297 155 46 chr6 47292586 47292805 -141986749 + MIR SINE MIR 4 246 -16 2377 119 0 0 chr6 47293037 47293348 -141986206 - AluSx SINE Alu -1 311 1 1613 125 156 0 chr6 47293732 47293988 -141985566 + AluSx SINE Alu 1 296 -6 401 88 0 59 chr6 47294544 47294612 -141984942 - Alu SINE Alu 0 301 238 2071 146 0 25 chr6 47294793 47295109 -141984445 - AluSx SINE Alu -2 310 3 329 294 52 64 chr6 47295235 47295561 -141983993 + L1PA8A LINE L1 5497 5818 -313 * 1386 275 42 59 chr6 47295268 47295912 -141983642 + L1ME3A LINE L1 5521 6153 -17 460 296 35 18 chr6 47295917 47296086 -141983468 + L1ME3A LINE L1 5483 5654 -516 277 224 15 15 chr6 47296101 47296168 -141983386 + MER112 DNA MER1_type 1 67 -193 271 169 52 65 chr6 47296237 47296314 -141983240 + MER112 DNA MER1_type 94 169 -91 1765 149 90 34 chr6 47296358 47296680 -141982874 + MLT1A1 LTR MaLR 1 340 -25 527 186 10 0 chr6 47296693 47296795 -141982759 - U13 snRNA snRNA 0 104 2 312 100 0 0 chr6 47296800 47296840 -141982714 + MLT1A1 LTR MaLR 326 365 0 293 220 99 0 chr6 47297020 47297111 -141982443 + L1ME3A LINE L1 5863 5962 -208 22 94 0 0 chr6 47297236 47297300 -141982254 + AT_rich Low_complexity Low_complexity 1 64 0 1239 208 62 50 chr6 47297301 47297383 -141982171 + MER58B DNA MER1_type 1 81 -2339 2404 80 3 7 chr6 47297383 47297682 -141981872 - AluSp SINE Alu -15 298 1 1239 208 62 50 chr6 47297682 47297936 -141981618 + MER58B DNA MER1_type 81 341 0 219 69 0 0 chr6 47297940 47297969 -141981585 + (CATA)n Simple_repeat Simple_repeat 4 32 0 233 266 0 0 chr6 47297971 47298035 -141981519 - L1MC4 LINE L1 -1339 6703 6640 297 128 0 0 chr6 47298054 47298101 -141981453 + (TG)n Simple_repeat Simple_repeat 1 47 0 189 0 0 0 chr6 47298101 47298122 -141981432 + (TA)n Simple_repeat Simple_repeat 1 21 0 1936 134 11 3 chr6 47298122 47298406 -141981148 - AluJb SINE Alu -17 295 10 22 0 0 0 chr6 47298420 47298442 -141981112 + AT_rich Low_complexity Low_complexity 1 22 0 546 178 20 0 chr6 47299581 47299682 -141979872 + MER5A DNA MER1_type 12 114 -75 560 224 35 0 chr6 47300149 47300265 -141979289 - L2 LINE L2 -1 3312 3193 1869 139 27 40 chr6 47300271 47300609 -141978945 - MER1B DNA MER1_type 0 339 7 244 200 75 38 chr6 47300614 47300694 -141978860 - L2 LINE L2 -141 3172 3090 * 797 266 72 45 chr6 47300673 47300874 -141978680 - L2 LINE L2 -418 2896 2681 1678 181 3 10 chr6 47300874 47301173 -141978381 + AluJb SINE Alu 1 297 -15 797 266 72 45 chr6 47301173 47301305 -141978249 - L2 LINE L2 -633 2681 2554 189 0 0 0 chr6 47302216 47302237 -141977317 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 784 131 0 58 chr6 47304492 47304629 -141974925 - FLAM_C SINE Alu 0 133 5 491 284 76 40 chr6 47305178 47305403 -141974151 + MIR SINE MIR 28 260 -2 3181 146 23 23 chr6 47305931 47306507 -141973047 - L1MB7 LINE L1 0 6184 5609 1923 139 27 7 chr6 47306634 47306928 -141972626 + AluSx SINE Alu 4 303 -9 1338 104 0 12 chr6 47307028 47307201 -141972353 - AluSx SINE Alu -141 171 1 853 242 92 36 chr6 47307201 47307282 -141972272 + MER113 DNA MER1_type? 116 191 -330 1616 165 20 37 chr6 47307282 47307579 -141971975 + AluJo SINE Alu 3 294 -18 853 242 92 36 chr6 47307579 47307856 -141971698 + MER113 DNA MER1_type? 191 494 -27 590 221 52 139 chr6 47307884 47308084 -141971470 - MLT1I LTR MaLR -41 368 207 1964 138 14 10 chr6 47308084 47308374 -141971180 + AluJb SINE Alu 4 294 -18 590 221 52 139 chr6 47308374 47308503 -141971051 - MLT1I LTR MaLR -202 207 68 389 218 116 20 chr6 47310639 47310786 -141968768 + MIR SINE MIR 95 255 -7 379 259 35 35 chr6 47312870 47312986 -141966568 - L2 LINE L2 0 3272 3157 426 272 87 40 chr6 47314112 47314285 -141965269 - MER5A DNA MER1_type 0 189 9 2374 89 3 22 chr6 47314749 47314925 -141964629 - AluSx SINE Alu -3 309 140 2049 138 0 0 chr6 47314925 47315216 -141964338 - AluSx SINE Alu -11 301 11 2374 89 3 22 chr6 47315216 47315354 -141964200 - AluSx SINE Alu -172 140 1 2616 47 0 0 chr6 47315751 47316048 -141963506 - AluY SINE Alu -14 297 1 2390 98 0 0 chr6 47316095 47316401 -141963153 + AluSq SINE Alu 1 306 -7 199 368 53 11 chr6 47316691 47316786 -141962768 - MIR SINE MIR -94 114 16 3183 137 55 2 chr6 47316807 47317333 -141962221 - L1MB3 LINE L1 0 6183 5630 1729 124 6 100 chr6 47317862 47318192 -141961362 + AluJo SINE Alu 1 299 -13 1813 128 0 49 chr6 47318317 47318622 -141960932 - AluJo SINE Alu -12 300 11 6440 123 35 13 chr6 47322337 47322496 -141957058 + Tigger1 DNA MER2_type 26 180 -2238 2414 65 0 0 chr6 47322496 47322810 -141956744 - AluY SINE Alu 0 314 1 6440 123 35 13 chr6 47322810 47323630 -141955924 + Tigger1 DNA MER2_type 180 1027 -1391 26 0 0 0 chr6 47323630 47323656 -141955898 + AT_rich Low_complexity Low_complexity 1 26 0 1029 181 44 56 chr6 47323660 47323909 -141955645 - AluJo SINE Alu -66 246 1 3256 118 23 16 chr6 47323909 47324394 -141955160 + Tigger1 DNA MER2_type 1011 1498 -920 987 95 15 0 chr6 47324395 47324532 -141955022 + Tigger1 DNA MER2_type 1832 1970 -448 1920 163 0 10 chr6 47324533 47324839 -141954715 - AluJo SINE Alu -9 303 1 23 0 0 0 chr6 47324850 47324873 -141954681 + AT_rich Low_complexity Low_complexity 1 23 0 665 111 0 0 chr6 47325169 47325259 -141954295 - THE1B LTR MaLR -80 284 195 * 2056 125 16 10 chr6 47325244 47325549 -141954005 + Tigger1 DNA MER2_type 1931 2237 -181 906 203 0 0 chr6 47325552 47325715 -141953839 + FRAM SINE Alu 4 166 0 293 105 0 0 chr6 47325752 47325790 -141953764 - Alu SINE Alu -18 284 247 1667 184 7 4 chr6 47325801 47326079 -141953475 - AluJo SINE Alu -30 282 4 383 149 9 103 chr6 47326099 47326206 -141953348 - L1MC5 LINE L1 -158 7803 7707 195 129 0 0 chr6 47326215 47326246 -141953308 + (CA)n Simple_repeat Simple_repeat 2 32 0 2063 141 7 0 chr6 47326262 47326560 -141952994 - AluJb SINE Alu -12 300 1 334 235 188 29 chr6 47326560 47326730 -141952824 - L1MC5 LINE L1 -254 7707 7511 4018 53 2 2 chr6 47327152 47327641 -141951913 + L1PA7 LINE L1 5666 6154 0 601 294 64 61 chr6 47327661 47327973 -141951581 - L1ME4a LINE L1 -80 6041 5732 2663 49 0 0 chr6 47327973 47328278 -141951276 - AluY SINE Alu -6 305 1 601 294 64 61 chr6 47328278 47328732 -141950822 - L1ME4a LINE L1 -389 5732 5263 360 188 12 12 chr6 47328768 47328848 -141950706 + MER116 DNA Mariner 1 80 0 255 191 0 0 chr6 47328931 47328978 -141950576 - L2 LINE L2 0 3313 3267 2259 104 10 0 chr6 47329161 47329459 -141950095 + AluSx SINE Alu 1 301 -11 385 316 97 22 chr6 47329459 47329779 -141949775 - L1ME4a LINE L1 -1075 5071 4728 1926 162 3 3 chr6 47329792 47330095 -141949459 - AluSx SINE Alu -9 303 1 1628 174 22 16 chr6 47330233 47330550 -141949004 - L1MB1 LINE L1 0 6168 5850 2096 181 40 9 chr6 47330659 47331080 -141948474 - L1MB8 LINE L1 0 6178 5745 1672 254 69 4 chr6 47332211 47332663 -141946891 - MLT1J LTR MaLR -3 508 28 278 355 157 21 chr6 47332711 47333131 -141946423 + L2 LINE L2 2365 2841 -473 414 263 10 10 chr6 47333618 47333717 -141945837 - L2 LINE L2 -3 3310 3212 1639 231 75 25 chr6 47333717 47334227 -141945327 + L1ME2 LINE L1 5630 6164 0 495 239 39 77 chr6 47334238 47334472 -141945082 - L2 LINE L2 -109 3204 2980 847 175 82 112 chr6 47334729 47334952 -141944602 - L1ME3A LINE L1 -5 6165 5950 2336 63 0 10 chr6 47334952 47335253 -141944301 - AluY SINE Alu -13 298 1 847 175 82 112 chr6 47335253 47335298 -141944256 - L1ME3A LINE L1 -220 5950 5905 2304 93 0 10 chr6 47336774 47337087 -141942467 - AluSg SINE Alu 0 310 1 295 180 9 162 chr6 47338204 47338261 -141941293 - MLT1J LTR MaLR 0 511 477 898 144 8 0 chr6 47338261 47338393 -141941161 + FLAM_C SINE Alu 1 133 0 295 180 9 162 chr6 47338393 47338446 -141941108 - MLT1J LTR MaLR -34 477 418 1028 217 41 20 chr6 47338462 47338706 -141940848 - MIR SINE MIR -6 256 8 237 211 149 70 chr6 47338711 47338825 -141940729 - MLT1J LTR MaLR -79 432 310 182 257 0 0 chr6 47338854 47338889 -141940665 - MIR3 SINE MIR -6 202 168 343 194 33 50 chr6 47339369 47339549 -141940005 + (TATAA)n Simple_repeat Simple_repeat 2 178 0 * 416 226 19 7 chr6 47339437 47339592 -141939962 + (TA)n Simple_repeat Simple_repeat 2 158 0 310 316 84 42 chr6 47339594 47339784 -141939770 + L1M4 LINE L1 2952 3149 -2997 2002 131 3 0 chr6 47339820 47340117 -141939437 + AluSq SINE Alu 1 298 -15 262 266 104 13 chr6 47340272 47340426 -141939128 - L1ME4a LINE L1 -9 6112 5945 289 185 37 0 chr6 47340542 47340596 -141938958 - MIR SINE MIR -16 246 191 2057 137 0 3 chr6 47340823 47341136 -141938418 + AluJb SINE Alu 1 312 0 553 199 35 76 chr6 47341539 47341710 -141937844 + MER103 DNA DNA 2 165 -1 2024 136 0 0 chr6 47342641 47342942 -141936612 + AluJo SINE Alu 1 301 -11 1581 146 47 0 chr6 47344720 47344973 -141934581 + AluJb SINE Alu 1 265 -47 1621 176 7 0 chr6 47345019 47345308 -141934246 - AluJb SINE Alu -21 291 1 439 268 36 14 chr6 47345334 47345472 -141934082 - MIR SINE MIR -9 253 113 633 315 36 29 chr6 47345500 47345808 -141933746 + L3 LINE CR1 1257 1566 -11 2980 253 67 33 chr6 47346888 47348112 -141931442 - L2 LINE L2 -1 3312 2055 213 324 15 0 chr6 47349120 47349188 -141930366 + MIR3 SINE MIR 137 205 -3 938 251 35 13 chr6 47349655 47349882 -141929672 + MIR SINE MIR 2 233 -29 388 158 53 0 chr6 47350417 47350493 -141929061 - MER116 DNA Mariner 0 80 1 660 195 75 79 chr6 47350508 47350744 -141928810 - MIR SINE MIR -21 241 1 569 235 74 7 chr6 47351228 47351377 -141928177 + L1ME3 LINE L1 5967 6125 -37 1919 107 75 0 chr6 47351689 47351969 -141927585 + AluSx SINE Alu 1 301 -11 216 0 0 0 chr6 47352516 47352540 -141927014 + (CAG)n Simple_repeat Simple_repeat 2 25 0 1401 154 0 8 chr6 47352680 47352914 -141926640 + AluJo SINE Alu 2 233 -79 822 220 114 35 chr6 47354206 47354433 -141925121 + MIR SINE MIR 5 249 -13 1903 106 4 4 chr6 47354974 47355249 -141924305 - AluSx SINE Alu -3 309 35 2204 95 7 0 chr6 47355533 47355828 -141923726 + AluSc SINE Alu 1 297 -12 2008 119 3 3 chr6 47355940 47356242 -141923312 + AluY SINE Alu 1 302 -9 407 194 29 58 chr6 47356290 47356393 -141923161 + Charlie4 DNA MER1_type 1855 1954 -7 2674 23 0 0 chr6 47356630 47356940 -141922614 + AluY SINE Alu 1 310 -1 2139 82 32 0 chr6 47357465 47357773 -141921781 + AluSx SINE Alu 1 312 0 625 257 102 8 chr6 47357773 47358018 -141921536 + L1ME4a LINE L1 5606 5873 -248 280 202 18 88 chr6 47358028 47358142 -141921412 + L1ME4a LINE L1 5930 6035 -86 1999 116 13 31 chr6 47358142 47358460 -141921094 - AluSq SINE Alu -1 312 1 607 301 68 44 chr6 47358561 47358989 -141920565 - L1MC4a LINE L1 -101 6020 5583 883 270 183 25 chr6 47358993 47359397 -141920157 - MLT1J LTR MaLR 0 511 44 342 362 4 10 chr6 47359524 47359661 -141919893 - L1MC4a LINE L1 -804 5342 5204 2208 91 7 3 chr6 47359661 47359969 -141919585 - AluSc SINE Alu 0 309 1 342 362 4 10 chr6 47359969 47359988 -141919566 - L1MC4a LINE L1 -942 5204 5186 782 101 0 0 chr6 47359988 47360087 -141919467 + FRAM SINE Alu 56 154 -22 185 250 0 0 chr6 47362631 47362675 -141916879 - MIR SINE MIR -34 228 185 322 230 23 46 chr6 47362717 47362804 -141916750 - MIR3 SINE MIR -14 194 110 992 264 98 64 chr6 47363099 47363138 -141916416 - MLT1J LTR MaLR -10 501 465 1996 99 7 11 chr6 47363138 47363449 -141916105 + AluSq SINE Alu 1 310 0 992 264 98 64 chr6 47363449 47363889 -141915665 - MLT1J LTR MaLR -46 465 5 2657 224 105 72 chr6 47364991 47365041 -141914513 - L1ME LINE L1 -3856 2224 2177 2125 123 0 0 chr6 47365041 47365349 -141914205 - AluSx SINE Alu -4 308 1 2657 224 105 72 chr6 47365349 47366104 -141913450 - L1ME LINE L1 -3903 2177 1448 2047 96 0 7 chr6 47366104 47366385 -141913169 + AluSg SINE Alu 17 295 -15 2657 224 105 72 chr6 47366385 47366456 -141913098 - L1ME LINE L1 -4632 1448 1381 3327 140 48 3 chr6 47366456 47367022 -141912532 - L1MB2 LINE L1 -12 6159 5569 2657 224 105 72 chr6 47367022 47367621 -141911933 - L1ME LINE L1 -4699 1381 803 5459 43 3 0 chr6 47367621 47368270 -141911284 - L1PA6 LINE L1 -2 6152 5502 2657 224 105 72 chr6 47368270 47368418 -141911136 - L1ME LINE L1 -5277 803 661 1197 182 37 5 chr6 47368418 47368632 -141910922 + MER58A DNA MER1_type 1 221 -3 2657 224 105 72 chr6 47368632 47368650 -141910904 - L1ME LINE L1 -5419 661 645 2246 81 0 7 chr6 47368650 47368948 -141910606 + AluY SINE Alu 1 296 -15 2657 224 105 72 chr6 47368948 47369046 -141910508 - L1ME LINE L1 -5435 645 480 338 256 88 93 chr6 47369107 47369384 -141910170 - L1ME LINE L1 -5771 299 24 288 198 223 70 chr6 47369402 47369463 -141910091 + MER112 DNA MER1_type 6 56 -204 261 0 0 0 chr6 47369463 47369492 -141910062 + (CA)n Simple_repeat Simple_repeat 2 30 0 288 198 223 70 chr6 47369492 47369587 -141909967 + MER112 DNA MER1_type 56 186 -74 1317 163 13 13 chr6 47369612 47369839 -141909715 + AluJo SINE Alu 54 280 -32 2137 76 24 0 chr6 47370406 47370695 -141908859 - AluSx SINE Alu -16 296 1 2305 81 0 0 chr6 47370842 47371139 -141908415 + AluSg SINE Alu 1 297 -13 754 230 168 26 chr6 47372053 47372279 -141907275 - MIR SINE MIR 0 262 5 1059 272 88 11 chr6 47372516 47372869 -141906685 + MLT1J2 LTR MaLR 71 450 0 1542 252 158 9 chr6 47372925 47373472 -141906082 - MLT1G LTR MaLR 0 590 1 214 265 0 51 chr6 47373472 47373510 -141906044 + CT-rich Low_complexity Low_complexity 4 42 -54 1494 167 9 97 chr6 47373510 47373852 -141905702 - AluJo SINE Alu 0 312 1 214 265 0 51 chr6 47373852 47373911 -141905643 + CT-rich Low_complexity Low_complexity 42 96 0 1019 184 72 14 chr6 47374105 47374312 -141905242 - MER20 DNA MER1_type 0 219 1 308 79 0 0 chr6 47374379 47374417 -141905137 - 5S rRNA rRNA -83 38 1 398 261 22 50 chr6 47374423 47374603 -141904951 - Charlie7 DNA MER1_type 0 2612 2438 655 153 0 165 chr6 47374614 47374690 -141904864 + FLAM_C SINE Alu 2 36 -276 7433 46 0 12 chr6 47374690 47376245 -141903309 - L1PA5 LINE L1 -6 6148 4602 655 153 0 165 chr6 47376245 47376338 -141903216 + FLAM_C SINE Alu 36 143 -169 360 176 0 0 chr6 47376341 47376409 -141903145 + GA-rich Low_complexity Low_complexity 1 68 0 751 117 0 2 chr6 47376434 47376692 -141902862 + AluSx SINE Alu 2 310 -2 194 229 124 105 chr6 47376930 47377035 -141902519 + MIR SINE MIR 119 225 -37 534 237 0 43 chr6 47377038 47377132 -141902422 + L1MC3 LINE L1 5695 5783 -2025 4113 99 43 3 chr6 47377132 47377710 -141901844 + LTR43 LTR ERV1 2 602 0 534 237 0 43 chr6 47377710 47377754 -141901800 + L1MC3 LINE L1 5783 5827 -1981 32 0 0 0 chr6 47377795 47377827 -141901727 + AT_rich Low_complexity Low_complexity 1 32 0 2306 86 3 3 chr6 47377831 47378134 -141901420 + AluSg SINE Alu 1 303 -7 4963 150 45 73 chr6 47378143 47379282 -141900272 + L1MC3 LINE L1 5812 7018 -767 1385 152 45 19 chr6 47379282 47379551 -141900003 - AluJo SINE Alu -5 307 32 275 183 67 0 chr6 47379554 47379614 -141899940 + L1MC3 LINE L1 7036 7099 -686 237 329 0 0 chr6 47379624 47379703 -141899851 + MLT1F1 LTR MaLR 47 125 -442 2215 118 0 0 chr6 47379731 47380037 -141899517 + AluSx SINE Alu 1 306 -6 2258 79 3 0 chr6 47380037 47380329 -141899225 + AluSq SINE Alu 1 293 -20 315 27 0 0 chr6 47380329 47380366 -141899188 + L1MC3 LINE L1 7206 7242 -543 1967 117 4 0 chr6 47380458 47380739 -141898815 + L1MC3 LINE L1 7245 7526 -259 508 250 75 103 chr6 47380954 47381206 -141898348 + MIR SINE MIR 15 259 -3 1963 140 0 9 chr6 47381248 47381563 -141897991 - AluSx SINE Alu 0 312 1 2099 104 10 3 chr6 47381585 47381894 -141897660 - AluSp SINE Alu -2 311 1 562 199 22 0 chr6 47381955 47382091 -141897463 + GA-rich Low_complexity Low_complexity 2 140 0 243 260 82 0 chr6 47382099 47382172 -141897382 - LTR50 LTR ERVL -107 688 610 1651 100 70 30 chr6 47382224 47382494 -141897060 + AluSx SINE Alu 1 281 -31 348 119 15 15 chr6 47382514 47382581 -141896973 - L1MB7 LINE L1 -4 6180 6114 936 151 6 0 chr6 47382591 47382750 -141896804 - AluJb SINE Alu -33 279 120 819 125 15 0 chr6 47382780 47382916 -141896638 - FLAM_C SINE Alu -5 138 1 433 247 63 52 chr6 47382916 47383090 -141896464 - L1ME1 LINE L1 -54 6112 5937 1699 149 39 4 chr6 47386191 47386472 -141893082 - AluSx SINE Alu -21 291 1 839 293 162 36 chr6 47387266 47388076 -141891478 - L2 LINE L2 -1 3312 2377 2247 90 10 6 chr6 47388248 47388559 -141890995 + AluSx SINE Alu 1 312 0 1481 326 167 27 chr6 47388593 47389646 -141889908 + L3 LINE CR1 363 1563 -14 21 57 0 0 chr6 47390036 47390071 -141889483 + AT_rich Low_complexity Low_complexity 1 35 0 1695 197 0 3 chr6 47390618 47390933 -141888621 + 7SLRNA srpRNA srpRNA 1 314 -6 356 184 53 13 chr6 47391302 47391378 -141888176 - MIR3 SINE MIR -42 166 88 230 200 0 46 chr6 47392673 47392738 -141886816 - MER5B DNA MER1_type 0 178 117 1699 227 73 29 chr6 47392747 47393331 -141886223 + L1ME3A LINE L1 5157 5878 -292 2465 56 0 0 chr6 47393331 47393633 -141885921 + AluY SINE Alu 1 302 -9 1699 227 73 29 chr6 47393633 47393940 -141885614 + L1ME3A LINE L1 5878 6170 0 1867 213 110 27 chr6 47393956 47394196 -141885358 + L1ME1 LINE L1 5448 5667 -499 2070 114 7 0 chr6 47394196 47394502 -141885052 - AluSq SINE Alu -5 308 1 1867 213 110 27 chr6 47394502 47394788 -141884766 + L1ME1 LINE L1 5667 6018 -148 588 256 38 15 chr6 47394836 47394969 -141884585 + MER5B DNA MER1_type 43 178 0 940 250 44 8 chr6 47396556 47396804 -141882750 - MIR SINE MIR 0 262 6 1863 161 0 0 chr6 47396830 47397135 -141882419 - AluSx SINE Alu -5 307 3 854 241 125 5 chr6 47397141 47397365 -141882189 - MIR SINE MIR -10 252 2 2168 70 25 0 chr6 47402121 47402405 -141877149 + AluSp SINE Alu 1 291 -22 1892 131 3 16 chr6 47402838 47403144 -141876410 - AluJb SINE Alu -10 302 1 218 231 39 0 chr6 47403715 47403767 -141875787 + MER5A DNA MER1_type 61 114 -75 1184 215 21 108 chr6 47404551 47404923 -141874631 - MER102b DNA MER1_type -1 340 1 2006 176 14 11 chr6 47405776 47406140 -141873414 - MLT1A1 LTR MaLR 0 365 1 2081 121 0 16 chr6 47406495 47406810 -141872744 - AluSx SINE Alu -2 310 1 1873 148 16 0 chr6 47407445 47407748 -141871806 + AluSx SINE Alu 1 308 -4 2295 106 0 0 chr6 47407752 47408063 -141871491 + AluSx SINE Alu 1 311 -1 1921 82 22 8 chr6 47408439 47408733 -141870821 - AluSx SINE Alu 0 311 14 1477 164 7 21 chr6 47409327 47409635 -141869919 - AluJb SINE Alu 0 312 15 2476 43 0 3 chr6 47409822 47410121 -141869433 + AluY SINE Alu 1 298 -13 1758 149 0 0 chr6 47410148 47410416 -141869138 - AluSx SINE Alu -44 268 1 405 296 133 78 chr6 47411532 47411840 -141867714 - L2 LINE L2 -43 3229 2905 2206 94 17 0 chr6 47412131 47412430 -141867124 + AluSg SINE Alu 1 304 -6 1887 129 0 29 chr6 47413565 47413875 -141865679 - AluSx SINE Alu -11 301 1 2346 65 3 0 chr6 47414452 47414746 -141864808 - AluSp SINE Alu -18 295 1 2207 94 10 3 chr6 47414779 47415087 -141864467 + AluSg SINE Alu 1 310 0 204 245 0 0 chr6 47415257 47415306 -141864248 + T-rich Low_complexity Low_complexity 1 49 0 1729 141 0 4 chr6 47415311 47415567 -141863987 - AluJb SINE Alu -55 257 3 1522 154 8 8 chr6 47416808 47417075 -141862479 - AluJb SINE Alu -45 267 1 246 292 146 10 chr6 47417089 47417185 -141862369 - L2 LINE L2 -20 3293 3185 564 330 152 25 chr6 47417301 47418077 -141861477 - L2 LINE L2 -411 2903 2029 1417 171 25 14 chr6 47418102 47418382 -141861172 + AluJo SINE Alu 13 295 -17 394 283 125 11 chr6 47418445 47418629 -141860925 + L2 LINE L2 3104 3308 -5 * 649 309 72 54 chr6 47418581 47419244 -141860310 - L2 LINE L2 -1274 2040 1366 972 208 114 17 chr6 47419589 47420121 -141859433 - L2 LINE L2 -9 3304 2633 1802 172 7 0 chr6 47421076 47421384 -141858170 - AluSx SINE Alu -2 310 1 790 262 93 6 chr6 47421900 47422221 -141857333 - L1MC4a LINE L1 -1785 6023 5675 742 145 81 8 chr6 47422262 47422386 -141857168 - AluJo SINE Alu -178 134 2 476 194 9 65 chr6 47422598 47422706 -141856848 + MIR SINE MIR 37 138 -124 310 263 127 17 chr6 47424152 47424270 -141855284 - L2 LINE L2 -4 3309 3179 878 209 45 6 chr6 47424880 47425057 -141854497 - MER63A DNA MER1_type -26 184 1 2460 70 0 6 chr6 47425560 47425872 -141853682 - AluSg SINE Alu 0 310 1 1589 174 0 4 chr6 47425878 47426154 -141853400 - AluJo SINE Alu -17 295 21 835 197 7 20 chr6 47426158 47426310 -141853244 - AluJo SINE Alu -161 151 2 2486 56 0 0 chr6 47426857 47427161 -141852393 - AluY SINE Alu -7 304 1 810 281 87 46 chr6 47427251 47427643 -141851911 - L2 LINE L2 0 3272 2865 287 215 75 110 chr6 47427778 47427978 -141851576 - L2 LINE L2 -784 2530 2338 2100 119 0 0 chr6 47427990 47428285 -141851269 + AluSx SINE Alu 2 296 -16 283 300 138 29 chr6 47428802 47429012 -141850542 - L2 LINE L2 -1034 2280 2048 1348 219 105 56 chr6 47429043 47429473 -141850081 + MLT2B1 LTR ERVL 1 451 -69 791 143 0 7 chr6 47429481 47429621 -141849933 + (TCCC)n Simple_repeat Simple_repeat 4 142 0 312 98 0 0 chr6 47429623 47429664 -141849890 + MLT2B1 LTR ERVL 475 515 0 458 287 70 7 chr6 47429671 47429814 -141849740 - L2 LINE L2 -1309 2005 1854 400 305 144 33 chr6 47429868 47430389 -141849165 - L2 LINE L2 -1811 1503 925 1218 183 78 54 chr6 47430413 47430746 -141848808 + MER2 DNA MER2_type 2 342 -2 230 0 33 0 chr6 47430746 47430776 -141848778 + (TG)n Simple_repeat Simple_repeat 2 32 0 761 210 72 62 chr6 47430981 47431257 -141848297 - LTR4 LTR ERV1 0 596 318 280 270 124 43 chr6 47431449 47431634 -141847920 - LTR4 LTR ERV1 -396 200 1 5555 152 15 12 chr6 47431746 47432208 -141847346 - L1PB4 LINE L1 -9 6147 5688 2061 103 36 7 chr6 47432208 47432510 -141847044 - AluSx SINE Alu 0 312 2 5555 152 15 12 chr6 47432510 47433600 -141845954 - L1PB4 LINE L1 -468 5688 4592 2370 84 0 3 chr6 47433600 47433897 -141845657 - AluY SINE Alu -15 296 1 1871 193 79 52 chr6 47433898 47434049 -141845505 + L1MC4 LINE L1 7364 7509 -533 1512 190 42 10 chr6 47434049 47434338 -141845216 - AluJb SINE Alu -12 300 3 1871 193 79 52 chr6 47434338 47434497 -141845057 + L1MC4 LINE L1 7509 7662 -380 2371 85 7 0 chr6 47434497 47434792 -141844762 + AluSq SINE Alu 1 297 -16 1871 193 79 52 chr6 47434792 47435024 -141844530 + L1MC4 LINE L1 7662 7922 -120 757 183 21 0 chr6 47435072 47435214 -141844340 + L1MC4 LINE L1 7898 8042 0 899 49 0 8 chr6 47435283 47435405 -141844149 + (TTTC)n Simple_repeat Simple_repeat 1 121 0 1793 131 25 39 chr6 47435405 47435544 -141844010 - AluSx SINE Alu -33 279 145 2266 108 10 0 chr6 47435544 47435840 -141843714 - AluSx SINE Alu -13 299 1 1793 131 25 39 chr6 47435840 47435983 -141843571 - AluSx SINE Alu -167 145 1 1855 255 58 74 chr6 47436224 47437433 -141842121 + Charlie4 DNA MER1_type 493 1682 -279 1487 174 33 57 chr6 47437451 47437784 -141841770 + THE1C LTR MaLR 1 325 -50 1215 176 22 25 chr6 47437829 47437869 -141841685 - L1ME2 LINE L1 -1 6163 6124 2188 145 0 0 chr6 47437869 47438172 -141841382 - AluSg SINE Alu -7 303 1 1215 176 22 25 chr6 47438172 47438759 -141840795 - L1ME2 LINE L1 -40 6124 5403 * 2975 214 52 54 chr6 47438742 47439400 -141840154 - L1ME1 LINE L1 -4 6556 5898 2040 114 39 0 chr6 47439400 47439680 -141839874 + AluSq SINE Alu 1 291 -22 2062 82 52 0 chr6 47439685 47439952 -141839602 + AluSp SINE Alu 1 281 -32 300 27 0 0 chr6 47439952 47439989 -141839565 + (TAAAA)n Simple_repeat Simple_repeat 1 37 0 2975 214 52 54 chr6 47439989 47440602 -141838952 - L1ME1 LINE L1 -664 5896 5279 1385 129 37 4 chr6 47440612 47440633 -141838921 - L1MA4 LINE L1 -256 6041 6022 369 204 32 0 chr6 47440633 47440726 -141838828 - L1MB3 LINE L1 -1 6182 6087 1385 129 37 4 chr6 47440726 47440951 -141838603 - L1MA4 LINE L1 -275 6022 5793 4140 226 81 70 chr6 47441084 47441648 -141837906 - L1ME1 LINE L1 -1312 5228 4671 2103 143 0 0 chr6 47441648 47441948 -141837606 - AluSx SINE Alu -12 300 1 4140 226 81 70 chr6 47441948 47442579 -141836975 - L1ME1 LINE L1 -1869 4671 4048 2141 121 0 0 chr6 47442579 47442892 -141836662 - AluSg SINE Alu 0 313 1 2608 68 0 0 chr6 47442895 47443206 -141836348 - AluY SINE Alu 0 311 1 4140 226 81 70 chr6 47443206 47443486 -141836068 - L1ME1 LINE L1 -2493 4047 3771 2320 88 3 0 chr6 47443486 47443798 -141835756 - AluSp SINE Alu 0 313 1 4140 226 81 70 chr6 47443798 47444092 -141835462 - L1ME1 LINE L1 -2769 3771 3428 2231 100 30 10 chr6 47444092 47444393 -141835161 - AluSx SINE Alu -5 307 1 4140 226 81 70 chr6 47444393 47444501 -141835053 - L1ME1 LINE L1 -3112 3428 3323 2338 102 7 0 chr6 47444504 47444807 -141834747 - AluSx SINE Alu -7 305 1 360 198 19 9 chr6 47444871 47444977 -141834577 + (TA)n Simple_repeat Simple_repeat 1 107 0 1813 163 14 7 chr6 47444982 47445270 -141834284 - AluSx SINE Alu -20 292 3 808 201 35 17 chr6 47445280 47445569 -141833985 - L1ME1 LINE L1 -3890 2650 2357 302 154 0 0 chr6 47445683 47445735 -141833819 + FAM SINE Alu 127 178 -1 581 172 17 0 chr6 47445743 47445859 -141833695 - L1MB3 LINE L1 -16 6167 6050 2649 48 0 0 chr6 47445861 47446170 -141833384 - AluY SINE Alu -2 309 1 326 197 14 0 chr6 47446174 47446245 -141833309 - L1M4 LINE L1 -2921 3723 3652 1192 148 0 0 chr6 47446247 47446430 -141833124 - AluSg/x SINE Alu 0 310 128 9576 159 35 62 chr6 47446430 47446561 -141832993 - L1M4 LINE L1 -2966 3678 3545 2225 112 6 6 chr6 47446561 47446874 -141832680 - AluSq SINE Alu 0 313 1 9576 159 35 62 chr6 47446874 47447436 -141832118 - L1M4 LINE L1 -3099 3545 2969 387 105 0 0 chr6 47447436 47447493 -141832061 + (TA)n Simple_repeat Simple_repeat 2 58 0 2143 105 13 35 chr6 47447493 47447806 -141831748 - AluSx SINE Alu -6 306 1 9576 159 35 62 chr6 47447806 47448225 -141831329 - L1M4 LINE L1 -3674 2970 2541 1847 135 19 77 chr6 47448225 47448536 -141831018 - AluSx SINE Alu -19 293 1 9576 159 35 62 chr6 47448536 47448878 -141830676 - L1M4 LINE L1 -4103 2541 2191 3231 144 5 76 chr6 47448878 47449508 -141830046 - LTR9 LTR ERV1 0 612 29 2409 62 3 19 chr6 47449508 47449816 -141829738 - AluY SINE Alu -8 303 1 3231 144 5 76 chr6 47449816 47449844 -141829710 - LTR9 LTR ERV1 -583 29 1 9576 159 35 62 chr6 47449844 47450214 -141829340 - L1M4 LINE L1 -4453 2191 1813 2228 60 26 0 chr6 47450214 47450482 -141829072 - AluSq SINE Alu -10 303 29 9576 159 35 62 chr6 47450482 47450560 -141828994 - L1M4 LINE L1 -4831 1813 1734 2055 120 24 7 chr6 47450560 47450851 -141828703 - AluSg SINE Alu -7 303 8 9576 159 35 62 chr6 47450851 47451807 -141827747 - L1M4 LINE L1 -4910 1734 889 1141 157 0 0 chr6 47451807 47451973 -141827581 - AluSg/x SINE Alu -17 295 130 3601 169 15 13 chr6 47451974 47452591 -141826963 - L1M4 LINE L1 -5750 896 279 331 189 54 0 chr6 47452596 47452670 -141826884 - L1M4 LINE L1 -6452 90 13 3224 215 49 41 chr6 47452688 47453255 -141826299 - L1ME1 LINE L1 -4215 2325 1764 2176 142 35 55 chr6 47453255 47453271 -141826283 - MER65A LTR ERV1 0 445 430 477 0 0 0 chr6 47453271 47453324 -141826230 + (GA)n Simple_repeat Simple_repeat 2 54 0 2176 142 35 55 chr6 47453324 47453707 -141825847 - MER65A LTR ERV1 -15 430 52 2172 119 0 0 chr6 47453707 47454020 -141825534 - AluSx SINE Alu 0 313 1 2176 142 35 55 chr6 47454020 47454069 -141825485 - MER65A LTR ERV1 -393 52 4 3224 215 49 41 chr6 47454069 47454553 -141825001 - L1ME1 LINE L1 -4776 1764 1255 672 66 19 47 chr6 47454600 47454661 -141824893 - L1MB2 LINE L1 0 6171 6113 907 203 111 75 chr6 47454661 47454961 -141824593 - MER57A LTR ERV1 0 403 84 2049 109 0 0 chr6 47454961 47455227 -141824327 + AluSg SINE Alu 41 306 -4 907 203 111 75 chr6 47455227 47455315 -141824239 - MER57A LTR ERV1 -319 84 1 672 66 19 47 chr6 47455315 47455359 -141824195 - L1MB2 LINE L1 -58 6113 6069 293 311 22 30 chr6 47455504 47455639 -141823915 - L1ME1 LINE L1 -6405 135 2 1035 255 26 50 chr6 47455678 47455996 -141823558 - L1M4 LINE L1 -874 5272 4963 2552 63 3 0 chr6 47455996 47456299 -141823255 + AluY SINE Alu 1 304 -7 1035 255 26 50 chr6 47456299 47456357 -141823197 - L1M4 LINE L1 -1183 4963 4905 440 225 147 39 chr6 47456373 47456604 -141822950 + Charlie4 DNA MER1_type 1703 1958 -3 197 315 45 22 chr6 47456620 47456709 -141822845 + MIR SINE MIR 20 110 -152 407 319 73 70 chr6 47456734 47457048 -141822506 - L2 LINE L2 -8 3264 2950 2116 106 0 7 chr6 47457071 47457381 -141822173 - AluSx SINE Alu 0 309 2 353 317 100 81 chr6 47457406 47458025 -141821529 - L2 LINE L2 -439 2875 2245 181 200 67 0 chr6 47458177 47458222 -141821332 + MIR SINE MIR 107 154 -108 239 258 157 0 chr6 47459084 47459173 -141820381 + MIR3 SINE MIR 72 174 -34 2105 86 51 10 chr6 47459884 47460176 -141819378 - AluSx SINE Alu -8 304 1 1752 191 83 8 chr6 47461677 47462064 -141817490 - MLT1C LTR MaLR 0 467 52 1278 89 112 37 chr6 47462386 47462509 -141817045 - MER30 DNA MER1_type 0 230 118 2215 79 35 3 chr6 47462509 47462799 -141816755 + AluY SINE Alu 1 299 -12 1278 89 112 37 chr6 47462799 47462889 -141816665 - MER30 DNA MER1_type -112 118 1 1914 170 3 0 chr6 47463363 47463663 -141815891 + AluJb SINE Alu 1 301 -11 816 189 0 0 chr6 47465078 47465210 -141814344 - FLAM_A SINE Alu -1 132 1 2312 90 10 0 chr6 47466674 47466974 -141812580 - AluSp SINE Alu -8 305 3 28 48 0 0 chr6 47468219 47468261 -141811293 + AT_rich Low_complexity Low_complexity 1 42 0 2167 120 7 10 chr6 47468619 47468920 -141810634 - AluSq SINE Alu -13 300 1 302 239 45 11 chr6 47468926 47469014 -141810540 - MIR SINE MIR -52 210 120 231 293 0 0 chr6 47469081 47469139 -141810415 - MIR SINE MIR -158 104 47 2302 108 3 3 chr6 47470007 47470314 -141809240 + AluSq SINE Alu 1 307 -6 2453 68 0 16 chr6 47470749 47471059 -141808495 - AluY SINE Alu -6 305 1 197 328 17 0 chr6 47471463 47471521 -141808033 + L2 LINE L2 3205 3263 -9 370 278 234 13 chr6 47471843 47472070 -141807484 + L3 LINE CR1 1187 1463 -114 2166 112 3 26 chr6 47472845 47473149 -141806405 + AluSx SINE Alu 1 297 -15 2426 86 0 3 chr6 47473196 47473499 -141806055 + AluY SINE Alu 1 302 -9 458 256 25 0 chr6 47474083 47474204 -141805350 + MER5B DNA MER1_type 3 126 -52 1698 188 3 19 chr6 47474205 47474514 -141805040 - AluJo SINE Alu -8 304 1 501 32 0 0 chr6 47474528 47474591 -141804963 + (TTATG)n Simple_repeat Simple_repeat 2 64 0 2257 113 0 0 chr6 47474591 47474882 -141804672 - AluSx SINE Alu -21 291 1 215 370 123 7 chr6 47475143 47475281 -141804273 + L2 LINE L2 3118 3271 -1 2106 152 81 71 chr6 47476058 47476566 -141802988 + Charlie1b DNA MER1_type 3 515 -8 552 256 30 6 chr6 47477463 47477627 -141801927 + MIR SINE MIR 47 214 -48 192 320 90 0 chr6 47478133 47478233 -141801321 - MIR SINE MIR -119 143 35 2135 96 20 3 chr6 47480371 47480664 -141798890 - AluSp SINE Alu -15 298 1 242 317 47 39 chr6 47481109 47481276 -141798278 - MIR SINE MIR -50 212 42 1618 213 13 0 chr6 47482224 47482525 -141797029 + AluJo SINE Alu 1 305 -7 1157 146 155 0 chr6 47482754 47482993 -141796561 + L1MD3 LINE L1 7715 7990 -5 2208 100 3 3 chr6 47483339 47483639 -141795915 - AluSx SINE Alu -12 300 1 610 128 94 13 chr6 47485981 47486130 -141793424 - L1MB2 LINE L1 0 6171 6011 193 357 188 18 chr6 47487764 47487876 -141791678 + MER5A DNA MER1_type 37 167 -22 1607 204 177 14 chr6 47489353 47489468 -141790086 - L1ME2 LINE L1 0 6164 6069 2510 72 0 7 chr6 47489468 47489775 -141789779 + AluY SINE Alu 1 305 -6 1607 204 177 14 chr6 47489775 47490173 -141789381 - L1ME2 LINE L1 -95 6069 5567 279 0 0 0 chr6 47490177 47490208 -141789346 + (TG)n Simple_repeat Simple_repeat 2 32 0 221 163 50 25 chr6 47490227 47490266 -141789288 + (TA)n Simple_repeat Simple_repeat 2 39 -44 2368 69 14 0 chr6 47490266 47490557 -141788997 + AluSx SINE Alu 1 295 -17 221 163 50 25 chr6 47490557 47490597 -141788957 + (TA)n Simple_repeat Simple_repeat 39 83 0 716 189 0 0 chr6 47490779 47490901 -141788653 + FLAM_A SINE Alu 2 123 -10 2263 103 0 3 chr6 47490912 47491204 -141788350 + AluSc SINE Alu 1 291 -18 2003 198 58 6 chr6 47491258 47491754 -141787800 - L1M4c LINE L1 -4764 1882 1361 1068 191 97 120 chr6 47491756 47492148 -141787406 - MLT1B LTR MaLR 0 390 8 3214 200 57 18 chr6 47492149 47492968 -141786586 - L1M4c LINE L1 -5229 1313 463 344 253 63 89 chr6 47493539 47493729 -141785825 - MLT1I LTR MaLR -27 382 198 2220 121 0 10 chr6 47493780 47494093 -141785461 + AluSg SINE Alu 1 310 0 241 214 41 10 chr6 47494107 47494205 -141785349 + L1M4 LINE L1 3073 3173 -2973 1218 144 0 30 chr6 47494206 47494407 -141785147 + AluSg/x SINE Alu 118 312 0 393 183 14 0 chr6 47494408 47494479 -141785075 + L1M4 LINE L1 3154 3225 -2921 2402 59 0 3 chr6 47494483 47494773 -141784781 + AluY SINE Alu 1 289 -22 333 318 8 54 chr6 47495439 47495568 -141783986 - MIR SINE MIR -120 142 20 196 341 73 0 chr6 47496323 47496405 -141783149 + MIR SINE MIR 60 147 -115 2402 102 0 0 chr6 47496406 47496709 -141782845 + AluSg SINE Alu 1 303 -7 866 240 46 5 chr6 47496853 47497070 -141782484 + MIR SINE MIR 37 262 0 576 259 101 40 chr6 47497604 47497969 -141781585 - L2 LINE L2 -226 3087 2680 220 279 33 0 chr6 47497996 47498057 -141781497 - L2 LINE L2 0 3272 3210 2248 101 3 7 chr6 47498403 47498731 -141780823 + AluJb SINE Alu 1 327 0 277 302 42 0 chr6 47498923 47499019 -141780535 + MIR SINE MIR 148 247 -15 328 193 50 84 chr6 47500209 47500328 -141779226 - MER5B DNA MER1_type -59 119 5 * 396 257 71 0 chr6 47500327 47500440 -141779114 + L2 LINE L2 3150 3270 -2 488 172 193 7 chr6 47500526 47500671 -141778883 + MIR SINE MIR 13 184 -78 586 264 48 14 chr6 47500707 47500915 -141778639 - LTR33 LTR ERVL 0 521 307 1884 134 34 0 chr6 47500930 47501199 -141778355 + AluSx SINE Alu 1 278 -34 279 79 0 0 chr6 47501299 47501337 -141778217 + (CA)n Simple_repeat Simple_repeat 1 38 0 207 0 0 0 chr6 47501503 47501526 -141778028 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 435 52 0 0 chr6 47501525 47501583 -141777971 + (CA)n Simple_repeat Simple_repeat 2 59 0 2046 118 55 0 chr6 47501827 47502116 -141777438 - AluSg SINE Alu -5 305 1 315 306 9 0 chr6 47502393 47502504 -141777050 + MER117 DNA MER1_type 45 156 -41 198 348 55 27 chr6 47502590 47502846 -141776708 + L2 LINE L2 2804 3066 -247 2317 118 0 0 chr6 47502986 47503291 -141776263 - AluSg SINE Alu -5 305 1 212 266 0 128 chr6 47503480 47503574 -141775980 + MIR SINE MIR 64 145 -63 431 268 32 8 chr6 47504406 47504529 -141775025 + MIR SINE MIR 28 153 -109 1715 123 3 70 chr6 47504575 47504725 -141774829 + AluJb SINE Alu 4 126 -186 2420 95 0 0 chr6 47504725 47505029 -141774525 + AluY SINE Alu 1 304 -7 1715 123 3 70 chr6 47505029 47505179 -141774375 + AluJb SINE Alu 126 284 -28 2310 70 3 51 chr6 47505306 47505622 -141773932 - AluSp SINE Alu -2 311 11 1295 152 4 41 chr6 47505623 47505892 -141773662 + L1MB7 LINE L1 5914 6172 -12 200 59 29 0 chr6 47505896 47505930 -141773624 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 968 188 6 0 chr6 47506253 47506429 -141773125 + FRAM SINE Alu 1 176 0 506 327 75 9 chr6 47506437 47506663 -141772891 + L3 LINE CR1 869 1109 -468 2265 131 0 0 chr6 47506669 47506981 -141772573 + AluJb SINE Alu 1 312 0 630 217 12 50 chr6 47506982 47507143 -141772411 - MLT1L LTR MaLR -337 278 124 1460 163 16 12 chr6 47507805 47508062 -141771492 + MLT1A1 LTR MaLR 1 258 -107 513 141 33 0 chr6 47508404 47508496 -141771058 - LTR33 LTR ERVL -425 96 2 205 327 97 9 chr6 47509060 47509173 -141770381 + MIR3 SINE MIR 85 207 -1 539 268 81 30 chr6 47509407 47509536 -141770018 + MIR SINE MIR 54 198 -64 1819 175 0 13 chr6 47509536 47509839 -141769715 - AluJo SINE Alu -13 299 1 539 268 81 30 chr6 47509839 47509907 -141769647 + MIR SINE MIR 198 261 -1 558 308 65 31 chr6 47510004 47510264 -141769290 + L2 LINE L2 3045 3313 0 233 271 71 0 chr6 47510702 47510772 -141768782 - MIR SINE MIR -108 154 80 324 0 0 0 chr6 47510946 47510982 -141768572 + (CA)n Simple_repeat Simple_repeat 2 37 0 703 268 86 53 chr6 47511166 47511269 -141768285 - MIR SINE MIR 0 262 164 1322 143 147 15 chr6 47511269 47511535 -141768019 - AluSx SINE Alu -1 301 1 703 268 86 53 chr6 47511535 47511674 -141767880 - MIR SINE MIR -98 164 12 1765 125 201 8 chr6 47511738 47512097 -141767457 + MSTA LTR MaLR 1 428 0 392 239 8 60 chr6 47512310 47512427 -141767127 - MIR3 SINE MIR -34 174 64 189 0 0 0 chr6 47512870 47512891 -141766663 + (TCC)n Simple_repeat Simple_repeat 2 22 0 273 317 75 27 chr6 47513836 47514022 -141765532 + L3 LINE CR1 1190 1384 -193 286 236 20 108 chr6 47514508 47514656 -141764898 - MIR SINE MIR -58 150 16 635 251 12 18 chr6 47517698 47517869 -141761685 + MIR SINE MIR 91 260 -2 353 123 0 99 chr6 47518180 47518261 -141761293 - MIR3 SINE MIR -37 171 99 531 209 93 8 chr6 47518551 47518680 -141760874 - MIR SINE MIR -41 221 82 650 291 29 0 chr6 47519361 47519571 -141759983 + MIR SINE MIR 47 262 0 368 188 168 0 chr6 47519654 47519755 -141759799 - MIR SINE MIR -70 192 75 277 297 0 0 chr6 47520107 47520208 -141759346 + (CA)n Simple_repeat Simple_repeat 1 101 0 250 278 11 22 chr6 47520477 47520567 -141758987 - MER5B DNA MER1_type -1 177 89 * 437 239 177 0 chr6 47520559 47520689 -141758865 - MIR SINE MIR -109 153 1 279 119 0 0 chr6 47520948 47520990 -141758564 + MIR SINE MIR 79 120 -142 556 281 7 39 chr6 47521517 47521670 -141757884 + MIR SINE MIR 20 167 -95 2496 50 0 0 chr6 47521839 47522167 -141757387 - AluY SINE Alu 0 328 1 335 305 76 0 chr6 47522169 47522274 -141757280 - L2 LINE L2 -13 3259 3147 224 150 0 0 chr6 47522322 47522362 -141757192 - L2 LINE L2 -299 2973 2934 713 226 48 68 chr6 47523185 47523417 -141756137 + MIR SINE MIR 34 259 -3 215 224 211 0 chr6 47523417 47523493 -141756061 + MIR SINE MIR 90 181 -81 919 300 63 3 chr6 47523548 47523881 -141755673 + L1MC4a LINE L1 5529 5881 -1927 565 232 8 37 chr6 47524537 47524714 -141754840 + MIR SINE MIR 18 188 -74 1737 189 33 3 chr6 47524714 47525015 -141754539 + AluJo SINE Alu 1 310 -2 565 232 8 37 chr6 47525015 47525047 -141754507 + MIR SINE MIR 188 219 -43 922 257 90 56 chr6 47525055 47525499 -141754055 - LTR16C LTR ERVL -32 459 1 543 226 189 0 chr6 47525510 47525674 -141753880 - MIR SINE MIR -31 231 37 605 259 37 19 chr6 47525687 47525849 -141753705 - MIR3 SINE MIR -33 175 11 372 94 0 0 chr6 47526316 47526369 -141753185 + (TG)n Simple_repeat Simple_repeat 1 53 0 539 223 9 0 chr6 47526562 47526674 -141752880 - MER81 DNA DNA -1 113 1 232 170 21 0 chr6 47527003 47527050 -141752504 + MIR SINE MIR 81 128 -80 511 282 76 67 chr6 47527108 47527464 -141752090 - L1MC4a LINE L1 0 6121 5761 269 204 0 0 chr6 47528398 47528442 -141751112 - AluJ/monomer SINE Alu -259 44 1 2127 125 0 3 chr6 47528511 47528815 -141750739 - AluSx SINE Alu -9 303 1 1028 175 47 0 chr6 47528834 47529005 -141750549 + FRAM SINE Alu 1 173 -3 1550 225 21 24 chr6 47529026 47529408 -141750146 + L1ME3 LINE L1 5782 6162 0 249 289 52 0 chr6 47529844 47529941 -141749613 - MIR SINE MIR -65 143 42 581 189 42 28 chr6 47530571 47530714 -141748840 + L1ME2 LINE L1 5784 5928 -236 241 257 92 46 chr6 47530719 47530828 -141748726 - L3b LINE CR1 -191 1392 1279 2086 139 0 16 chr6 47531159 47531476 -141748078 - AluSx SINE Alu 0 312 1 2174 112 3 3 chr6 47531660 47531955 -141747599 - AluSx SINE Alu -17 295 1 181 204 45 0 chr6 47532038 47532082 -141747472 - MIR SINE MIR -1 261 216 * 339 254 49 49 chr6 47532056 47532178 -141747376 - L2 LINE L2 -27 3286 3165 275 321 38 31 chr6 47532419 47532578 -141746976 - L2 LINE L2 -528 2786 2627 989 220 44 38 chr6 47533238 47533658 -141745896 + LTR33 LTR ERVL 47 521 0 283 282 86 37 chr6 47533751 47533914 -141745640 + MIR SINE MIR 86 256 -6 239 283 19 28 chr6 47534378 47534508 -141745046 + GA-rich Low_complexity Low_complexity 1 128 0 452 191 17 52 chr6 47535162 47535277 -141744277 - L1ME3 LINE L1 -40 6122 6012 2031 108 11 14 chr6 47535329 47535616 -141743938 - AluSx SINE Alu 0 312 27 2263 101 0 0 chr6 47535624 47535911 -141743643 + AluSc SINE Alu 21 307 -2 240 111 0 0 chr6 47535911 47535947 -141743607 - AluSx SINE Alu -97 36 1 1161 233 30 3 chr6 47535947 47536243 -141743311 - L1ME3 LINE L1 -176 5986 5683 638 268 42 21 chr6 47536248 47536438 -141743116 + MIR SINE MIR 66 259 -3 1270 104 0 0 chr6 47536540 47536704 -141742850 + AluSg/x SINE Alu 132 295 -17 2338 113 0 0 chr6 47536934 47537234 -141742320 + AluSc SINE Alu 1 300 -9 240 241 0 0 chr6 47537797 47537851 -141741703 + MIR SINE MIR 82 135 -73 239 231 92 0 chr6 47540010 47540075 -141739479 + MIR SINE MIR 122 192 -70 653 182 55 55 chr6 47540875 47541012 -141738542 + MER96B DNA MER1_type? 1 140 -277 1823 207 19 68 chr6 47541012 47541543 -141738011 + MLT1D LTR MaLR 1 505 0 653 182 55 55 chr6 47541543 47541586 -141737968 + MER96B DNA MER1_type? 139 181 -236 203 258 15 15 chr6 47541771 47541837 -141737717 + GA-rich Low_complexity Low_complexity 1 66 0 2325 100 0 0 chr6 47541879 47542168 -141737386 + AluSx SINE Alu 1 289 -23 4056 248 49 71 chr6 47542273 47542601 -141736953 - HAL1 LINE L1 -10 2497 2163 584 212 35 0 chr6 47542601 47542714 -141736840 - FLAM_A SINE Alu -16 117 1 4056 248 49 71 chr6 47542714 47542892 -141736662 - HAL1 LINE L1 -344 2163 1983 2529 74 0 0 chr6 47542892 47543188 -141736366 + AluY SINE Alu 1 296 -15 4056 248 49 71 chr6 47543188 47543228 -141736326 - HAL1 LINE L1 -524 1983 1944 1832 158 7 26 chr6 47543228 47543538 -141736016 - AluJo SINE Alu -8 304 1 4056 248 49 71 chr6 47543538 47544204 -141735350 - HAL1 LINE L1 -563 1944 1265 2346 107 0 0 chr6 47544204 47544512 -141735042 - AluSx SINE Alu -1 311 4 4056 248 49 71 chr6 47544512 47544583 -141734971 - HAL1 LINE L1 -1242 1265 1194 684 168 0 0 chr6 47544583 47544702 -141734852 - FLAM_C SINE Alu -10 123 5 4056 248 49 71 chr6 47544702 47544888 -141734666 - HAL1 LINE L1 -1313 1194 1005 2334 53 3 11 chr6 47544888 47545203 -141734351 - AluY SINE Alu 0 313 1 4056 248 49 71 chr6 47545203 47545758 -141733796 - HAL1 LINE L1 -1502 1005 512 1318 222 78 40 chr6 47545758 47545819 -141733735 + MLT1C LTR MaLR 5 62 -405 2570 78 0 0 chr6 47545819 47546126 -141733428 - AluY SINE Alu -4 307 1 1318 222 78 40 chr6 47546126 47546147 -141733407 + MLT1C LTR MaLR 62 81 -386 2453 86 0 0 chr6 47546147 47546439 -141733115 - AluSg SINE Alu -18 292 1 1318 222 78 40 chr6 47546439 47546829 -141732725 + MLT1C LTR MaLR 81 467 0 2365 108 0 3 chr6 47546831 47547136 -141732418 + AluSx SINE Alu 1 304 -8 994 162 12 35 chr6 47547137 47547310 -141732244 + AluJb SINE Alu 135 303 -9 1489 172 19 83 chr6 47547344 47547580 -141731974 + AluJb SINE Alu 9 220 -92 2479 61 0 3 chr6 47547580 47547873 -141731681 + AluY SINE Alu 1 292 -19 1489 172 19 83 chr6 47547873 47547961 -141731593 + AluJb SINE Alu 220 312 0 229 244 0 0 chr6 47547974 47548019 -141731535 + Tigger5 DNA MER2_type 11 55 -2268 * 523 202 10 0 chr6 47548012 47548116 -141731438 + Tigger5 DNA MER2_type 2219 2323 0 934 251 96 70 chr6 47548116 47548452 -141731102 - HAL1 LINE L1 -1979 528 173 2401 166 59 55 chr6 47548452 47548763 -141730791 - MLT2B2 LTR ERVL 0 515 200 2432 86 7 0 chr6 47548763 47549065 -141730489 + AluSx SINE Alu 1 304 -8 2401 166 59 55 chr6 47549065 47549264 -141730290 - MLT2B2 LTR ERVL -315 200 3 934 251 96 70 chr6 47549264 47549440 -141730114 - HAL1 LINE L1 -2334 173 3 2454 74 0 0 chr6 47549930 47550226 -141729328 + AluY SINE Alu 1 296 -15 899 159 8 0 chr6 47550242 47550374 -141729180 + AluJo/FLAM SINE Alu 1 133 -179 2252 107 0 0 chr6 47550376 47550665 -141728889 - AluSx SINE Alu -23 289 1 1591 157 173 19 chr6 47551052 47551473 -141728081 + LTR54B LTR ERV1 11 496 -2 2046 115 36 26 chr6 47551702 47552007 -141727547 - AluSg SINE Alu -2 308 1 24 0 0 0 chr6 47552317 47552341 -141727213 + AT_rich Low_complexity Low_complexity 1 24 0 209 356 0 0 chr6 47552578 47552668 -141726886 + GA-rich Low_complexity Low_complexity 1 90 0 438 301 42 7 chr6 47552681 47552824 -141726730 - MIR SINE MIR -64 198 51 2513 93 0 0 chr6 47552865 47553177 -141726377 + AluSx SINE Alu 1 312 0 216 286 16 16 chr6 47553570 47553633 -141725921 - L2 LINE L2 0 3313 3251 513 253 46 11 chr6 47553665 47553839 -141725715 + MER104 DNA Tc2 1 180 0 646 223 36 0 chr6 47553851 47553990 -141725564 - MIR SINE MIR -15 247 104 2107 135 0 10 chr6 47553990 47554287 -141725267 - AluJb SINE Alu -18 294 1 202 281 177 10 chr6 47554818 47554914 -141724640 + MIR SINE MIR 34 145 -63 1162 294 72 5 chr6 47555414 47555842 -141723712 - LTR16A1 LTR ERVL 0 457 1 677 236 62 0 chr6 47555843 47556021 -141723533 + MER5A DNA MER1_type 1 189 0 287 260 110 31 chr6 47556379 47556482 -141723072 - MIR SINE MIR -80 182 66 1465 166 0 4 chr6 47556482 47556711 -141722843 + AluJo SINE Alu 1 228 -84 287 260 110 31 chr6 47556711 47556734 -141722820 - MIR SINE MIR -196 66 46 675 244 21 16 chr6 47556764 47556957 -141722597 + L1ME3 LINE L1 5959 6152 -10 1301 172 4 4 chr6 47556988 47557232 -141722322 + L1MB2 LINE L1 5887 6130 -41 1020 150 0 0 chr6 47557232 47557379 -141722175 + AluJo SINE Alu 1 147 -165 566 165 0 0 chr6 47557379 47557470 -141722084 + AluSg/x SINE Alu 205 295 -17 343 89 0 0 chr6 47557471 47557527 -141722027 + L1MB2 LINE L1 6116 6171 0 989 131 0 0 chr6 47557862 47558007 -141721547 + AluSc SINE Alu 165 309 0 2014 231 112 4 chr6 47558130 47558620 -141720934 - MER69 DNA AcHobo -1983 543 1 250 294 181 6 chr6 47558702 47558862 -141720692 - L3 LINE CR1 -349 1228 1041 286 250 60 60 chr6 47558936 47559052 -141720502 - L2 LINE L2 -1 3271 3156 1348 305 54 10 chr6 47559100 47559579 -141719975 - L3 LINE CR1 -707 870 371 3028 216 101 8 chr6 47559620 47560455 -141719099 - L1ME3A LINE L1 0 6170 5259 378 308 63 6 chr6 47560759 47560919 -141718635 + MIR SINE MIR 39 206 -56 521 239 113 72 chr6 47561057 47561279 -141718275 + MIR SINE MIR 29 259 -3 266 261 42 76 chr6 47561351 47561470 -141718084 - MIR SINE MIR -142 120 6 * 411 289 0 0 chr6 47561451 47561541 -141718013 - L3 LINE CR1 -1054 523 434 279 250 259 0 chr6 47562511 47562619 -141716935 + MIR SINE MIR 115 250 -12 720 240 130 80 chr6 47563334 47563468 -141716086 + L2 LINE L2 2338 2464 -850 2295 109 0 3 chr6 47563468 47563770 -141715784 - AluSx SINE Alu -3 309 9 720 240 130 80 chr6 47563770 47564198 -141715356 + L2 LINE L2 2464 2928 -386 453 293 142 0 chr6 47564258 47564470 -141715084 + L2 LINE L2 2818 3059 -254 631 196 14 7 chr6 47564772 47564910 -141714644 - LTR33 LTR ERVL -378 143 5 671 263 142 13 chr6 47564926 47564967 -141714587 + L2 LINE L2 3052 3086 -227 823 158 0 0 chr6 47564967 47565100 -141714454 - FLAM_A SINE Alu 0 133 1 671 263 142 13 chr6 47565100 47565290 -141714264 + L2 LINE L2 3086 3313 0 703 278 75 9 chr6 47566347 47566574 -141712980 + MIR SINE MIR 18 259 -3 2826 29 0 0 chr6 47566701 47567010 -141712544 + AluY SINE Alu 1 309 -2 1093 71 0 82 chr6 47567197 47567316 -141712238 - L1PA8 LINE L1 -1 6171 6071 2385 106 0 0 chr6 47567316 47567628 -141711926 - AluSx SINE Alu 0 312 1 1093 71 0 82 chr6 47567628 47567690 -141711864 - L1PA8 LINE L1 -101 6071 6005 187 98 59 39 chr6 47567745 47567796 -141711758 + (TCTCTG)n Simple_repeat Simple_repeat 2 53 0 305 355 63 39 chr6 47568085 47568155 -141711399 - L2 LINE L2 -1 3271 3204 2101 124 24 34 chr6 47568155 47568534 -141711020 - THE1C LTR MaLR 0 375 1 305 355 63 39 chr6 47568534 47568735 -141710819 - L2 LINE L2 -68 3204 2988 1831 235 24 32 chr6 47568735 47569228 -141710326 - LTR16C LTR ERVL 0 491 3 305 355 63 39 chr6 47569228 47569287 -141710267 - L2 LINE L2 -284 2988 2932 209 214 0 0 chr6 47569370 47569412 -141710142 + MIR SINE MIR 113 154 -108 2487 84 0 10 chr6 47570080 47570388 -141709166 + AluSg SINE Alu 1 305 -5 240 122 0 0 chr6 47570758 47570799 -141708755 + (GGA)n Simple_repeat Simple_repeat 3 43 0 275 304 55 72 chr6 47570885 47571122 -141708432 + L1MC/D LINE L1 5600 5832 -1976 1902 156 7 3 chr6 47571125 47571408 -141708146 + AluJb SINE Alu 9 292 -20 21 0 0 0 chr6 47571408 47571429 -141708125 + AT_rich Low_complexity Low_complexity 1 21 0 1274 82 13 0 chr6 47571522 47571681 -141707873 + AluY SINE Alu 1 161 -150 974 279 39 59 chr6 47571729 47572116 -141707438 - MLT1J LTR MaLR -8 503 125 2381 90 3 0 chr6 47572116 47572416 -141707138 + AluSg SINE Alu 1 301 -9 683 109 0 0 chr6 47572416 47572517 -141707037 + FLAM_A SINE Alu 42 142 0 23 0 0 0 chr6 47572593 47572616 -141706938 + AT_rich Low_complexity Low_complexity 1 23 0 2438 48 10 10 chr6 47572960 47573253 -141706301 - AluY SINE Alu -18 293 1 225 366 50 0 chr6 47573320 47573421 -141706133 + L2 LINE L2 3189 3294 -19 284 224 35 12 chr6 47573421 47573506 -141706048 - MIR SINE MIR -43 219 133 189 345 0 0 chr6 47573574 47573629 -141705925 + MIR SINE MIR 91 145 -117 2158 78 60 7 chr6 47574914 47575195 -141704359 - AluSx SINE Alu -16 296 1 1594 125 8 12 chr6 47576214 47576454 -141703100 - AluSg/x SINE Alu 0 310 72 228 189 0 0 chr6 47576454 47576491 -141703063 - Alu SINE Alu -263 37 1 203 204 93 0 chr6 47576508 47576562 -141702992 - MIR SINE MIR 0 262 204 1986 123 10 50 chr6 47576588 47576890 -141702664 - AluJo SINE Alu -22 290 1 357 229 73 52 chr6 47576896 47577088 -141702466 - L1MC5 LINE L1 -32 7929 7734 236 322 113 9 chr6 47577089 47577204 -141702350 + MIR SINE MIR 136 262 0 2249 205 54 0 chr6 47577284 47577732 -141701822 - MER70A LTR ERVL 0 472 1 243 308 98 73 chr6 47578856 47578926 -141700628 + L2 LINE L2 1985 2052 -1262 2301 119 3 0 chr6 47578926 47579236 -141700318 - AluSq SINE Alu -2 311 1 243 308 98 73 chr6 47579236 47579818 -141699736 + L2 LINE L2 2052 2653 -661 2053 160 64 35 chr6 47579961 47580367 -141699187 + MSTB1 LTR MaLR 15 432 0 899 239 160 87 chr6 47580462 47580697 -141698857 - MLT1J LTR MaLR -2 509 292 2023 127 0 42 chr6 47580697 47581004 -141698550 - AluSx SINE Alu -18 294 1 899 239 160 87 chr6 47581004 47581237 -141698317 - MLT1J LTR MaLR -219 292 7 204 385 27 58 chr6 47581260 47581520 -141698034 + L2 LINE L2 3020 3271 -1 682 280 16 1 chr6 47581655 47581856 -141697698 - L1ME3 LINE L1 0 6334 5971 426 359 38 8 chr6 47581952 47582189 -141697365 + L2 LINE L2 2826 3069 -203 898 195 125 57 chr6 47582271 47582811 -141696743 + MLT1E LTR MaLR 8 593 0 214 184 41 20 chr6 47582816 47582865 -141696689 + L2 LINE L2 3183 3232 -81 1050 149 20 0 chr6 47582894 47583095 -141696459 - MER119 DNA MER1_type -1 582 378 1069 180 0 11 chr6 47583095 47583273 -141696281 - FRAM SINE Alu 0 176 1 2272 128 0 3 chr6 47583278 47583590 -141695964 - AluSx SINE Alu -1 311 1 1093 185 188 71 chr6 47583590 47583650 -141695904 - MER119 DNA MER1_type -202 381 329 2223 115 0 3 chr6 47583650 47583969 -141695585 - AluSx SINE Alu 0 318 1 1093 185 188 71 chr6 47583969 47584168 -141695386 - MER119 DNA MER1_type -254 329 69 2035 162 0 3 chr6 47584168 47584471 -141695083 + AluJb SINE Alu 1 302 -10 1093 185 188 71 chr6 47584471 47584548 -141695006 - MER119 DNA MER1_type -514 69 2 628 299 69 46 chr6 47584713 47585180 -141694374 - LTR33A LTR ERVL -3 520 40 2185 116 0 17 chr6 47585200 47585501 -141694053 + AluSx SINE Alu 1 296 -16 296 335 35 20 chr6 47585671 47585823 -141693731 + MIR3 SINE MIR 39 193 -15 391 276 51 0 chr6 47586294 47586392 -141693162 - MIR3 SINE MIR -15 193 91 1774 175 0 6 chr6 47586589 47586903 -141692651 + AluJo SINE Alu 1 312 0 444 271 8 16 chr6 47586921 47587043 -141692511 + L2 LINE L2 3174 3294 -19 2141 118 0 13 chr6 47587471 47587784 -141691770 - AluSc SINE Alu 0 309 1 219 373 38 43 chr6 47587801 47587853 -141691701 + L2 LINE L2 2269 2320 -994 1523 209 121 37 chr6 47587853 47588284 -141691270 + MLT1C LTR MaLR 1 467 0 219 373 38 43 chr6 47588284 47588440 -141691114 + L2 LINE L2 2320 2476 -838 1237 235 70 27 chr6 47588712 47589086 -141690468 + LTR16A1 LTR ERVL 66 455 -2 2237 108 0 0 chr6 47590154 47590461 -141689093 + AluSx SINE Alu 1 307 -5 325 315 31 15 chr6 47590478 47590608 -141688946 - L1MC5 LINE L1 -48 7913 7782 984 114 0 0 chr6 47590635 47590766 -141688788 - FLAM_C SINE Alu -2 131 1 1850 148 0 26 chr6 47590798 47591109 -141688445 - AluJb SINE Alu -9 303 1 2030 123 20 0 chr6 47591119 47591411 -141688143 - AluSx SINE Alu -14 298 1 288 278 260 29 chr6 47592276 47592449 -141687105 - L3 LINE CR1 -1 1576 1364 546 270 44 0 chr6 47593135 47593330 -141686224 + MIR SINE MIR 5 213 -49 222 268 18 0 chr6 47594105 47594161 -141685393 + L2 LINE L2 3140 3196 -76 506 174 17 43 chr6 47595230 47595345 -141684209 - Charlie4 DNA MER1_type -4 1957 1846 731 239 53 38 chr6 47595459 47595567 -141683987 + MIR SINE MIR 49 154 -108 1522 176 32 11 chr6 47595567 47595880 -141683674 + AluJb SINE Alu 1 319 0 731 239 53 38 chr6 47595880 47595979 -141683575 + MIR SINE MIR 154 260 -2 218 318 149 0 chr6 47596236 47596343 -141683211 + MIR SINE MIR 108 230 -32 709 277 80 56 chr6 47596389 47596567 -141682987 + MLT1H1 LTR MaLR 3 175 -380 580 258 57 67 chr6 47596567 47596776 -141682778 - MER63A DNA MER1_type -3 207 1 709 277 80 56 chr6 47596776 47597133 -141682421 + MLT1H1 LTR MaLR 175 550 -5 382 263 40 0 chr6 47597742 47597841 -141681713 + MER99 DNA DNA 1 103 -725 1966 115 18 0 chr6 47597869 47598182 -141681372 - AluSx SINE Alu 0 318 1 1474 212 14 3 chr6 47598233 47598539 -141681015 + AluJo SINE Alu 1 309 0 24 0 0 0 chr6 47598827 47598851 -141680703 + AT_rich Low_complexity Low_complexity 1 24 0 1754 168 3 0 chr6 47598871 47599169 -141680385 - AluJb SINE Alu -13 299 1 1123 146 0 0 chr6 47599229 47599400 -141680154 - FRAM SINE Alu -8 168 1 2887 178 22 11 chr6 47599721 47600265 -141679289 + MER99 DNA DNA 214 763 -65 274 309 77 61 chr6 47600442 47600623 -141678931 + L2 LINE L2 2082 2265 -1049 585 270 23 0 chr6 47600623 47600797 -141678757 + ERVL LTR ERVL 4821 4998 -766 2020 98 0 39 chr6 47600922 47601227 -141678327 + AluSp SINE Alu 1 293 -20 677 310 70 8 chr6 47601227 47601469 -141678085 + ERVL LTR ERVL 5169 5425 -339 652 293 156 11 chr6 47601803 47602066 -141677488 + LTR67 LTR ERVL 3 303 -254 2068 277 52 4 chr6 47602068 47602603 -141676951 + MER115 DNA AcHobo 2 562 -131 1556 231 159 34 chr6 47602611 47603140 -141676414 + MLT1G1 LTR MaLR 1 595 0 464 227 45 9 chr6 47603146 47603256 -141676298 + MER115 DNA AcHobo 573 686 -7 896 246 20 24 chr6 47603262 47603514 -141676040 + LTR67 LTR ERVL 307 557 0 892 256 29 20 chr6 47603638 47603884 -141675670 - MIR SINE MIR 0 262 15 403 297 40 20 chr6 47603994 47604196 -141675358 - L2 LINE L2 -214 3058 2853 2160 109 0 25 chr6 47604610 47604930 -141674624 - AluSx SINE Alu 0 312 1 333 283 19 0 chr6 47605042 47605148 -141674406 + MIR SINE MIR 154 261 -1 498 198 18 18 chr6 47605151 47605286 -141674268 - MIR SINE MIR -62 146 21 231 278 28 0 chr6 47605439 47605511 -141674043 + MIR SINE MIR 126 199 -63 239 277 108 0 chr6 47605576 47605659 -141673895 + MIR SINE MIR 111 202 -60 222 327 107 18 chr6 47606619 47606787 -141672767 + L2 LINE L2 2904 3086 -186 310 177 97 0 chr6 47606961 47607023 -141672531 + MER63 DNA MER1_type 1 694 -142 278 125 62 0 chr6 47607128 47607176 -141672378 + L2 LINE L2 3263 3313 0 431 294 132 15 chr6 47607754 47607958 -141671596 + L2 LINE L2 2919 3146 -167 1425 242 47 6 chr6 47607958 47608321 -141671233 - LTR16C LTR ERVL 0 491 114 226 222 0 0 chr6 47608338 47608383 -141671171 - MIR SINE MIR -65 197 153 813 127 0 0 chr6 47608383 47608493 -141671061 - FRAM SINE Alu -13 163 54 1330 167 9 5 chr6 47608504 47608726 -141670828 + AluJo SINE Alu 85 307 -5 486 256 48 6 chr6 47608974 47609142 -141670412 + L1ME4a LINE L1 5946 6120 -1 252 193 18 18 chr6 47610283 47610340 -141669214 + MIR SINE MIR 89 145 -63 310 232 144 24 chr6 47610341 47610466 -141669088 - L2 LINE L2 0 3313 3174 341 233 14 0 chr6 47610544 47610617 -141668937 - AluS SINE Alu -229 74 1 281 315 27 18 chr6 47610759 47610870 -141668684 + MIR3 SINE MIR 58 169 -39 690 259 75 15 chr6 47610873 47610977 -141668577 - MIR SINE MIR -3 259 163 1738 146 17 20 chr6 47610977 47611271 -141668283 - AluJo SINE Alu -19 293 1 690 259 75 15 chr6 47611271 47611367 -141668187 - MIR SINE MIR -99 163 47 672 157 58 0 chr6 47611376 47611497 -141668057 + MER3 DNA MER1_type 1 128 -81 353 206 167 48 chr6 47611587 47611713 -141667841 + MIR SINE MIR 12 152 -110 1721 155 3 64 chr6 47613095 47613424 -141666130 - AluJb SINE Alu -3 309 1 1314 144 0 147 chr6 47613950 47614262 -141665292 + AluJb SINE Alu 45 310 -2 254 237 82 96 chr6 47614475 47614610 -141664944 + L2 LINE L2 3180 3312 -1 287 350 0 42 chr6 47615130 47615250 -141664304 + MIR SINE MIR 106 220 -42 335 269 0 0 chr6 47615368 47615446 -141664108 - L2 LINE L2 0 3272 3195 1069 266 128 12 chr6 47615446 47616052 -141663502 + L2 LINE L2 2657 3313 0 245 174 22 0 chr6 47616053 47616099 -141663455 - L2 LINE L2 -75 3238 3192 204 121 30 0 chr6 47616486 47616519 -141663035 + CT-rich Low_complexity Low_complexity 2 35 0 471 78 0 0 chr6 47616718 47616782 -141662772 + (TA)n Simple_repeat Simple_repeat 2 65 0 382 275 192 0 chr6 47617050 47617217 -141662337 + MIR SINE MIR 2 200 -62 222 191 0 0 chr6 47617285 47617327 -141662227 - MIR SINE MIR -118 144 103 410 186 124 44 chr6 47618501 47618614 -141660940 - L1ME1 LINE L1 -6 6158 6037 1074 75 0 32 chr6 47619603 47619789 -141659765 + (GA)n Simple_repeat Simple_repeat 1 180 0 213 278 22 22 chr6 47619934 47620024 -141659530 + GA-rich Low_complexity Low_complexity 1 90 0 43 81 0 0 chr6 47620098 47620197 -141659357 + GC_rich Low_complexity Low_complexity 1 99 0 283 260 27 14 chr6 47623503 47623576 -141655978 + L2 LINE L2 3198 3271 -1 200 236 42 42 chr6 47625461 47625533 -141654021 + C-rich Low_complexity Low_complexity 3 74 0 403 313 0 4 chr6 47626600 47626726 -141652828 - MIR SINE MIR -62 146 33 238 319 11 33 chr6 47626754 47626845 -141652709 - L2 LINE L2 0 3272 3184 329 292 135 11 chr6 47626951 47627129 -141652425 - L2 LINE L2 -225 3047 2848 2144 109 10 0 chr6 47627156 47627449 -141652105 - AluSc SINE Alu -13 296 1 1317 227 95 0 chr6 47627742 47628117 -141651437 - L2 LINE L2 -317 2996 2598 587 312 77 5 chr6 47628272 47628493 -141651061 + MIR SINE MIR 13 249 -13 338 313 28 56 chr6 47628557 47628841 -141650713 - L2 LINE L2 -1005 2309 2034 290 258 225 20 chr6 47628883 47629034 -141650520 - MER5A DNA MER1_type -1 188 7 191 222 19 0 chr6 47629097 47629151 -141650403 + MIR SINE MIR 82 136 -72 584 280 13 0 chr6 47629583 47629740 -141649814 + MER5B DNA MER1_type 2 160 -18 892 145 0 0 chr6 47630174 47630312 -141649242 + FLAM_C SINE Alu 1 138 -5 1743 128 10 47 chr6 47630371 47630669 -141648885 - AluJo SINE Alu -22 290 4 273 295 107 9 chr6 47630677 47630789 -141648765 - L2 LINE L2 -11 3261 3139 429 301 37 15 chr6 47630797 47630933 -141648621 - MIR3 SINE MIR -54 154 16 689 242 96 90 chr6 47631119 47631158 -141648396 - MLT1J LTR MaLR -154 357 320 800 185 6 39 chr6 47631158 47631219 -141648335 + MER5B DNA MER1_type 3 65 -113 2267 88 0 0 chr6 47631219 47631513 -141648041 + AluSq SINE Alu 1 294 -19 800 185 6 39 chr6 47631513 47631629 -141647925 + MER5B DNA MER1_type 65 174 -4 689 242 96 90 chr6 47631629 47631944 -141647610 - MLT1J LTR MaLR -191 320 1 1645 164 38 3 chr6 47632633 47632926 -141646628 - AluSx SINE Alu -9 303 1 286 244 56 11 chr6 47633296 47633386 -141646168 - MIR SINE MIR -69 139 46 1915 231 62 13 chr6 47634054 47634521 -141645033 - LTR16C LTR ERVL -1 490 1 393 233 0 11 chr6 47635141 47635231 -141644323 - L2 LINE L2 0 3313 3225 309 291 94 0 chr6 47635240 47635357 -141644197 - MIR3 SINE MIR 0 208 81 214 202 50 143 chr6 47635374 47635436 -141644118 - MIR3 SINE MIR -6 202 153 2020 116 3 0 chr6 47635436 47635743 -141643811 - AluSx SINE Alu 0 308 1 214 202 50 143 chr6 47635743 47635798 -141643756 - MIR3 SINE MIR -55 153 95 180 244 24 0 chr6 47637379 47637420 -141642134 - L2 LINE L2 -22 3250 3209 535 311 87 5 chr6 47638003 47638222 -141641332 + MIR SINE MIR 2 238 -24 1144 260 104 48 chr6 47639006 47639755 -141639799 - L2 LINE L2 -98 3215 2410 521 353 23 23 chr6 47640434 47640695 -141638859 - L1ME LINE L1 -304 5817 5557 2130 117 7 0 chr6 47641020 47641329 -141638225 - AluSq SINE Alu -2 311 1 223 286 70 53 chr6 47641847 47642015 -141637539 - MIR SINE MIR -13 249 72 613 263 5 78 chr6 47642514 47642719 -141636835 - MIR SINE MIR -6 256 67 2181 116 0 3 chr6 47642860 47643171 -141636383 - AluSx SINE Alu -1 311 2 211 329 14 0 chr6 47643864 47643934 -141635620 + L2 LINE L2 3186 3256 -16 461 265 108 0 chr6 47644802 47644968 -141634586 + MIR SINE MIR 76 259 -3 1535 142 68 21 chr6 47645496 47645777 -141633777 - AluJo SINE Alu -18 294 1 1861 140 3 3 chr6 47645786 47646071 -141633483 - AluJb SINE Alu -11 301 17 483 200 81 75 chr6 47646609 47646769 -141632785 + MER103 DNA DNA 4 164 -2 299 354 39 0 chr6 47647005 47647132 -141632422 + MIR3 SINE MIR 14 145 -63 528 186 224 39 chr6 47647315 47647471 -141632083 - MIR SINE MIR 0 262 78 664 234 84 66 chr6 47647711 47647938 -141631616 - MIR SINE MIR -12 250 20 309 280 82 39 chr6 47647943 47648150 -141631404 + L2 LINE L2 3060 3275 -38 1347 231 20 137 chr6 47648637 47648800 -141630754 - L1ME3 LINE L1 -6 6156 5976 2269 107 0 0 chr6 47648800 47649110 -141630444 + AluSg SINE Alu 1 310 0 1347 231 20 137 chr6 47649110 47649633 -141629921 - L1ME3 LINE L1 -186 5976 5550 2032 136 7 0 chr6 47649681 47649975 -141629579 - AluJo SINE Alu -16 296 1 479 252 50 8 chr6 47650490 47650609 -141628945 - MIR3 SINE MIR -2 206 83 243 272 26 53 chr6 47650905 47651019 -141628535 - MIR SINE MIR -42 220 110 285 164 73 0 chr6 47651239 47651294 -141628260 - L2 LINE L2 0 3272 3214 3874 180 12 25 chr6 47651503 47651556 -141627998 - MER49 LTR ERV1 0 923 871 2260 83 0 43 chr6 47651556 47651880 -141627674 - AluSg SINE Alu 0 310 1 3874 180 12 25 chr6 47651880 47652580 -141626974 - MER49 LTR ERV1 -52 871 180 576 0 0 0 chr6 47653039 47653103 -141626451 + (TG)n Simple_repeat Simple_repeat 2 65 0 677 209 109 99 chr6 47653103 47653310 -141626244 - LTR16A1 LTR ERVL -3 454 242 315 0 0 0 chr6 47653310 47653345 -141626209 + (TG)n Simple_repeat Simple_repeat 2 36 0 677 209 109 99 chr6 47653345 47653439 -141626115 - LTR16A1 LTR ERVL -215 242 150 197 325 12 12 chr6 47654119 47654202 -141625352 + L3b LINE CR1 1155 1237 -346 428 296 84 19 chr6 47654294 47654507 -141625047 - MIR SINE MIR -28 234 8 192 365 52 0 chr6 47655179 47655275 -141624279 + L2 LINE L2 2397 2497 -817 1365 169 6 91 chr6 47655291 47655611 -141623943 - AluJo SINE Alu -10 302 10 478 323 62 55 chr6 47655654 47655768 -141623786 + L2 LINE L2 2553 2665 -649 1832 138 3 26 chr6 47655768 47656073 -141623481 - AluJb SINE Alu -14 298 1 478 323 62 55 chr6 47656073 47656376 -141623178 + L2 LINE L2 2665 2973 -341 298 296 139 9 chr6 47656392 47656507 -141623047 - L2 LINE L2 -5 3308 3179 680 299 39 48 chr6 47657142 47657630 -141621924 + L1MEd LINE L1 700 1184 -4935 1486 154 92 31 chr6 47657630 47657923 -141621631 + AluJo SINE Alu 1 311 -1 680 299 39 48 chr6 47657923 47657996 -141621558 + L1MEd LINE L1 1184 1256 -4863 1456 186 165 0 chr6 47658625 47658953 -141620601 - MLT1F1 LTR MaLR 0 567 186 2170 89 10 0 chr6 47658954 47659256 -141620298 - AluSx SINE Alu -7 305 1 331 281 91 25 chr6 47659950 47660071 -141619483 - MIR SINE MIR -63 145 17 417 328 8 0 chr6 47660653 47660775 -141618779 - MER5B DNA MER1_type -18 160 38 852 246 42 9 chr6 47660781 47660996 -141618558 - L1ME3 LINE L1 0 6162 5941 301 280 51 4 chr6 47661051 47661171 -141618383 - MIR SINE MIR -62 146 35 2003 148 0 0 chr6 47661273 47661570 -141617984 + AluJb SINE Alu 1 297 -15 2274 106 0 0 chr6 47661572 47661875 -141617679 + AluSc SINE Alu 3 305 -4 202 167 0 62 chr6 47663254 47663302 -141616252 + C-rich Low_complexity Low_complexity 5 49 0 334 68 0 0 chr6 47664362 47664406 -141615148 - LTR23 LTR ERV1 -74 363 320 315 342 33 33 chr6 47664988 47665140 -141614414 - HAL1b LINE L1 -7 1341 1190 707 233 90 6 chr6 47665156 47665362 -141614192 + MIR SINE MIR 19 234 -28 466 273 80 34 chr6 47666048 47666224 -141613330 - L2 LINE L2 0 3313 3130 237 287 6 79 chr6 47666345 47666509 -141613045 - ORSL DNA AcHobo 0 275 124 1517 221 105 20 chr6 47666719 47667157 -141612397 - MLT1J LTR MaLR -31 480 6 929 236 59 0 chr6 47668169 47668389 -141611165 - MIR SINE MIR -28 234 2 201 260 0 104 chr6 47669982 47670078 -141609476 - L3 LINE CR1 -56 1521 1436 257 320 21 21 chr6 47670151 47670250 -141609304 + C-rich Low_complexity Low_complexity 1 99 0 216 346 6 34 chr6 47670399 47670578 -141608976 + CT-rich Low_complexity Low_complexity 1 174 0 716 233 105 22 chr6 47671225 47671453 -141608101 + MIR SINE MIR 16 262 0 205 250 13 79 chr6 47671452 47671528 -141608026 - MIR SINE MIR -74 188 118 * 1963 215 20 16 chr6 47672338 47672392 -141607162 + Charlie4a DNA MER1_type 18 70 -1891 2195 100 3 7 chr6 47672392 47672693 -141606861 - AluSx SINE Alu -12 300 1 1963 215 20 16 chr6 47672693 47673127 -141606427 + Charlie4a DNA MER1_type 70 508 0 383 291 35 0 chr6 47673759 47673900 -141605654 + (GGGTG)n Simple_repeat Simple_repeat 3 148 0 2180 120 3 0 chr6 47674374 47674682 -141604872 + AluSq SINE Alu 1 309 -4 205 309 236 0 chr6 47674751 47674874 -141604680 - MIR SINE MIR -34 228 77 292 330 122 0 chr6 47675031 47675146 -141604408 - L2 LINE L2 -10 3262 3134 2020 90 43 20 chr6 47675474 47675774 -141603780 + AluSx SINE Alu 1 307 -5 228 67 0 0 chr6 47675778 47675808 -141603746 + (TA)n Simple_repeat Simple_repeat 1 30 0 234 314 8 42 chr6 47675821 47675939 -141603615 - L1MC/D LINE L1 -1897 5911 5798 1225 147 115 9 chr6 47677332 47677550 -141602004 + AluJo SINE Alu 4 244 -68 424 269 88 26 chr6 47677636 47677829 -141601725 + L2 LINE L2 2875 3079 -193 268 164 36 0 chr6 47678030 47678085 -141601469 - L3 LINE CR1 -7 1570 1514 510 217 445 7 chr6 47678105 47678517 -141601037 - L2 LINE L2 0 3313 2712 381 305 153 6 chr6 47678519 47678696 -141600858 - L3 LINE CR1 -69 1508 1306 566 230 11 80 chr6 47680079 47680266 -141599288 - MIR SINE MIR -2 260 87 612 235 84 12 chr6 47682704 47682870 -141596684 - MER5B DNA MER1_type 0 178 1 196 272 158 9 chr6 47683007 47683121 -141596433 + L2 LINE L2 3137 3267 -5 417 240 99 8 chr6 47683977 47684098 -141595456 - MIR3 SINE MIR -15 193 62 322 113 14 14 chr6 47684692 47684763 -141594791 + (TG)n Simple_repeat Simple_repeat 2 72 0 263 283 0 0 chr6 47684804 47684864 -141594690 - MIR3 SINE MIR -21 187 128 375 273 119 39 chr6 47685623 47685909 -141593645 - L2 LINE L2 -73 3240 2932 230 306 16 0 chr6 47686190 47686252 -141593302 - L3 LINE CR1 -3 1574 1512 185 239 56 84 chr6 47686401 47686472 -141593082 - MIR SINE MIR -82 180 112 1446 241 143 21 chr6 47686841 47687311 -141592243 + MLT1H1 LTR MaLR 1 583 -7 2102 153 0 0 chr6 47687948 47688249 -141591305 - AluSx SINE Alu -11 301 1 303 325 12 3 chr6 47688256 47688404 -141591150 - MIR3 SINE MIR -64 144 10 297 353 56 19 chr6 47689109 47689378 -141590176 + L1ME4a LINE L1 5843 6121 0 443 279 42 0 chr6 47690225 47690408 -141589146 - MIR SINE MIR -29 233 39 656 259 108 43 chr6 47690724 47690956 -141588598 + MIR SINE MIR 15 261 -1 2383 104 0 22 chr6 47690997 47691315 -141588239 + AluSx SINE Alu 2 312 0 197 248 48 88 chr6 47691885 47692010 -141587544 - L3b LINE CR1 -123 1460 1341 229 284 69 35 chr6 47692370 47692486 -141587068 + MIR3 SINE MIR 78 197 -11 215 215 151 54 chr6 47693869 47693962 -141585592 - L3 LINE CR1 -58 1519 1418 335 269 144 18 chr6 47694179 47694346 -141585208 + MIR3 SINE MIR 20 207 -1 253 62 42 0 chr6 47694411 47694459 -141585095 + (TTTTG)n Simple_repeat Simple_repeat 5 54 0 602 287 40 20 chr6 47694982 47695184 -141584370 + MLT1L LTR MaLR 322 527 -88 1434 272 46 32 chr6 47695330 47695826 -141583728 - MLT1J LTR MaLR 0 511 9 265 292 28 0 chr6 47695853 47695925 -141583629 - L2 LINE L2 0 3313 3240 1429 245 148 16 chr6 47696524 47696740 -141582814 + MLT1G1 LTR MaLR 4 190 -405 195 42 0 0 chr6 47696740 47696764 -141582790 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 1429 245 148 16 chr6 47696764 47697054 -141582500 + MLT1G1 LTR MaLR 190 577 -18 561 233 254 4 chr6 47697061 47697457 -141582097 + MLT1H1 LTR MaLR 3 550 -5 338 228 13 13 chr6 47697801 47697880 -141581674 + MLT1J2 LTR MaLR 258 336 -114 393 261 7 70 chr6 47698078 47698220 -141581334 + L2 LINE L2 3180 3312 -1 1505 192 0 22 chr6 47699837 47699950 -141579604 + AluJo SINE Alu 23 137 -175 2205 115 0 19 chr6 47699950 47700264 -141579290 + AluSg SINE Alu 1 308 -2 1505 192 0 22 chr6 47700264 47700426 -141579128 + AluJo SINE Alu 137 292 -20 454 231 0 0 chr6 47700432 47700523 -141579031 - MIR SINE MIR -123 139 49 232 250 135 29 chr6 47700648 47700752 -141578802 - L2 LINE L2 -156 3116 3002 209 273 172 0 chr6 47701340 47701439 -141578115 + L2 LINE L2 3147 3262 -10 * 407 282 27 0 chr6 47701438 47701548 -141578006 - MIR SINE MIR -90 172 60 193 203 0 43 chr6 47702555 47702624 -141576930 + GA-rich Low_complexity Low_complexity 1 66 0 750 181 96 24 chr6 47702837 47703003 -141576551 - MER20 DNA MER1_type -1 218 41 585 311 86 0 chr6 47703585 47703794 -141575760 - MIR SINE MIR -33 229 3 405 265 14 48 chr6 47704138 47704285 -141575269 + MIR SINE MIR 69 210 -52 182 281 0 61 chr6 47704322 47704404 -141575150 - MIR SINE MIR -79 183 107 2104 82 4 0 chr6 47704763 47705020 -141574534 - AluSp SINE Alu -55 258 1 628 231 34 131 chr6 47705069 47705367 -141574187 - MLT1L LTR MaLR -143 465 100 1133 245 140 17 chr6 47706014 47706502 -141573052 - L1MC4 LINE L1 -13 7982 7373 1074 273 59 54 chr6 47706820 47707263 -141572291 + MLT1J2 LTR MaLR 1 445 -5 2273 108 0 0 chr6 47707443 47707738 -141571816 + AluSx SINE Alu 1 295 -17 219 229 14 43 chr6 47707768 47707827 -141571727 - L2 LINE L2 -658 2656 2598 1264 240 164 27 chr6 47707827 47708272 -141571282 - MLT1J LTR MaLR -1 510 5 284 251 229 11 chr6 47708340 47708515 -141571039 + MIR SINE MIR 47 259 -3 234 62 0 0 chr6 47708578 47708610 -141570944 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 182 309 79 72 chr6 47708623 47708746 -141570808 - L2 LINE L2 -37 3235 3109 2124 141 0 6 chr6 47708746 47709058 -141570496 + AluSx SINE Alu 2 311 -1 182 309 79 72 chr6 47709058 47709073 -141570481 - L2 LINE L2 -163 3109 3096 254 366 69 8 chr6 47709515 47709646 -141569908 + L1MDa LINE L1 22 160 -6380 451 233 23 0 chr6 47710012 47710098 -141569456 + FLAM_A SINE Alu 2 89 -53 1504 220 96 37 chr6 47710144 47710580 -141568974 + MLT1C LTR MaLR 6 467 0 594 285 7 0 chr6 47710583 47710727 -141568827 + MER58B DNA MER1_type 197 341 0 1935 242 30 6 chr6 47710727 47711235 -141568319 + L1M4 LINE L1 3383 3902 -2244 329 222 25 0 chr6 47711235 47711316 -141568238 + MLT1F1 LTR MaLR 485 567 0 509 265 104 53 chr6 47711326 47711511 -141568043 - L1ME3A LINE L1 -223 5947 5870 2474 92 0 0 chr6 47711511 47711815 -141567739 + AluSp SINE Alu 1 304 -9 509 265 104 53 chr6 47711815 47712056 -141567498 - L1ME3A LINE L1 -300 5870 5643 2424 95 0 7 chr6 47712415 47712720 -141566834 + AluSx SINE Alu 1 303 -9 203 324 18 18 chr6 47713023 47713134 -141566420 + (CA)n Simple_repeat Simple_repeat 1 111 0 261 327 18 0 chr6 47713144 47713254 -141566300 - MER103 DNA DNA -1 165 54 359 288 49 55 chr6 47713514 47713607 -141565947 - L1ME4a LINE L1 -238 5883 5790 1987 227 127 2 chr6 47713607 47714136 -141565418 + MLT1G1 LTR MaLR 1 595 0 359 288 49 55 chr6 47714136 47714205 -141565349 - L1ME4a LINE L1 -331 5790 5722 356 283 232 0 chr6 47715299 47715437 -141564117 - MER5A DNA MER1_type -13 176 7 1795 157 46 30 chr6 47716627 47716996 -141562558 + THE1C LTR MaLR 1 375 0 305 306 34 0 chr6 47717229 47717373 -141562181 + MIR SINE MIR 38 137 -71 180 258 30 30 chr6 47718098 47718164 -141561390 + L2 LINE L2 3004 3069 -203 313 298 53 15 chr6 47718608 47718739 -141560815 + L1MDa LINE L1 981 1116 -5414 5035 63 3 1 chr6 47718739 47719403 -141560151 + L1PA7 LINE L1 5490 6154 0 557 291 163 13 chr6 47719456 47719934 -141559620 + L1MDa LINE L1 1119 1668 -4862 181 246 29 58 chr6 47720201 47720270 -141559284 + MIR SINE MIR 82 148 -60 200 235 20 20 chr6 47720305 47720356 -141559198 + MIR SINE MIR 36 86 -122 345 241 0 13 chr6 47721129 47721208 -141558346 - MIR SINE MIR -116 146 69 2291 111 3 3 chr6 47721437 47721744 -141557810 - AluSx SINE Alu -5 307 1 456 304 114 22 chr6 47721799 47722109 -141557445 - L1MC4a LINE L1 -1639 6169 5802 2533 61 14 0 chr6 47722109 47722406 -141557148 - AluSp SINE Alu -12 301 1 456 304 114 22 chr6 47722406 47722549 -141557005 - L1MC4a LINE L1 -2006 5802 5674 966 244 157 21 chr6 47722578 47722955 -141556599 + LTR16A LTR ERVL 16 443 -7 184 279 45 27 chr6 47723742 47723853 -141555701 - MIR SINE MIR -62 146 34 2433 75 0 35 chr6 47724706 47725025 -141554529 - AluSc SINE Alu -1 308 1 1193 184 22 60 chr6 47725027 47725423 -141554131 + MLT1C LTR MaLR 28 466 -1 369 229 0 0 chr6 47725551 47725621 -141553933 - MIR SINE MIR -181 81 12 462 114 0 0 chr6 47725636 47725706 -141553848 + (ATG)n Simple_repeat Simple_repeat 1 70 0 702 253 241 0 chr6 47726598 47727154 -141552400 - L2 LINE L2 -41 3272 2570 469 139 0 17 chr6 47727175 47727290 -141552264 + (CA)n Simple_repeat Simple_repeat 1 113 0 350 270 70 17 chr6 47727429 47727544 -141552010 - MIR3 SINE MIR -27 181 61 1023 289 22 82 chr6 47728379 47728930 -141550624 + L2 LINE L2 2778 3285 -28 294 29 0 0 chr6 47728945 47728980 -141550574 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 2283 117 3 3 chr6 47730311 47730620 -141548934 + AluSx SINE Alu 1 309 -3 385 253 50 0 chr6 47730863 47730962 -141548592 + L1MD2 LINE L1 6028 6131 -228 741 169 0 0 chr6 47730962 47731080 -141548474 + FLAM_C SINE Alu 1 118 -25 407 288 92 7 chr6 47731619 47731772 -141547782 + MIR3 SINE MIR 25 190 -18 375 228 36 109 chr6 47733519 47733633 -141545921 + MER3 DNA MER1_type 27 123 -86 2231 120 3 0 chr6 47733633 47733932 -141545622 - AluSq SINE Alu -13 300 1 375 228 36 109 chr6 47733932 47734010 -141545544 + MER3 DNA MER1_type 123 205 -4 328 243 145 40 chr6 47734049 47734201 -141545353 - L2 LINE L2 -136 3177 3010 583 186 0 9 chr6 47735054 47735167 -141544387 - MLT1D LTR MaLR 0 505 394 1275 149 0 5 chr6 47735171 47735359 -141544195 + AluJb SINE Alu 1 187 -125 198 0 0 0 chr6 47735422 47735444 -141544110 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 1340 193 115 70 chr6 47735450 47735824 -141543730 - MLT1D LTR MaLR -114 391 1 951 193 38 5 chr6 47735927 47736139 -141543415 + MIR SINE MIR 24 242 -20 1943 138 0 11 chr6 47736322 47736605 -141542949 + AluSx SINE Alu 1 280 -32 639 0 0 0 chr6 47736605 47736676 -141542878 + (TAAAA)n Simple_repeat Simple_repeat 4 74 0 805 249 110 37 chr6 47736771 47737152 -141542402 + MLT1I LTR MaLR 1 409 0 1549 271 60 6 chr6 47737328 47737811 -141541743 - MLT1J LTR MaLR -2 509 1 244 233 187 13 chr6 47738232 47738381 -141541173 - MIR SINE MIR -60 202 24 372 302 34 56 chr6 47738424 47738603 -141540951 + MIR3 SINE MIR 11 185 -23 1220 227 84 29 chr6 47739039 47739084 -141540470 + L2 LINE L2 2650 2691 -622 2460 72 0 10 chr6 47739084 47739388 -141540166 - AluY SINE Alu -10 301 1 1220 227 84 29 chr6 47739388 47739958 -141539596 + L2 LINE L2 2691 3313 0 2244 105 3 3 chr6 47740152 47740447 -141539107 - AluSq SINE Alu -18 295 1 570 336 35 24 chr6 47740623 47740912 -141538642 + LTR16A1 LTR ERVL 166 457 0 341 357 31 15 chr6 47740987 47741183 -141538371 + MIR SINE MIR 58 256 -6 594 243 0 0 chr6 47741441 47741618 -141537936 + (CA)n Simple_repeat Simple_repeat 2 178 0 209 136 0 45 chr6 47741823 47741867 -141537687 + (CAGCC)n Simple_repeat Simple_repeat 5 46 0 989 275 130 39 chr6 47743096 47743579 -141535975 + L1MCc LINE L1 953 1479 -4944 2606 52 0 7 chr6 47743590 47743897 -141535657 + AluY SINE Alu 1 305 -6 1689 190 124 122 chr6 47743897 47744299 -141535255 - L1ME2 LINE L1 -120 6044 5645 333 0 0 0 chr6 47744299 47744336 -141535218 + (TG)n Simple_repeat Simple_repeat 2 38 0 1689 190 124 122 chr6 47744336 47744394 -141535160 - L1ME2 LINE L1 -519 5645 5589 2368 69 14 0 chr6 47744394 47744685 -141534869 + AluSx SINE Alu 1 295 -17 1689 190 124 122 chr6 47744685 47745012 -141534542 - L1ME2 LINE L1 -575 5589 5254 1300 115 6 0 chr6 47745027 47745201 -141534353 - AluSq SINE Alu -138 175 1 2371 204 41 30 chr6 47745203 47745511 -141534043 - L1M4 LINE L1 -814 6127 5824 2232 92 0 73 chr6 47745511 47745827 -141533727 - AluSc SINE Alu -16 293 1 2371 204 41 30 chr6 47745827 47746223 -141533331 - L1M4 LINE L1 -1117 5824 5415 2182 246 74 68 chr6 47746246 47746282 -141533272 - L1MCc LINE L1 -3129 3812 3778 2016 122 21 7 chr6 47746282 47746568 -141532986 + AluJb SINE Alu 1 290 -22 2182 246 74 68 chr6 47746568 47747996 -141531558 - L1MCc LINE L1 -3163 3778 2369 2223 106 3 0 chr6 47747996 47748303 -141531251 + AluSx SINE Alu 1 308 0 824 142 0 3 chr6 47748318 47748559 -141530995 + AluSx SINE Alu 3 309 0 1615 256 74 55 chr6 47748564 47748916 -141530638 - L1MCc LINE L1 -4758 2183 1839 2312 121 0 0 chr6 47748916 47749222 -141530332 - AluSx SINE Alu -6 306 1 1615 256 74 55 chr6 47749222 47749548 -141530006 - L1MCc LINE L1 -5102 1839 1521 2639 41 0 0 chr6 47749548 47749841 -141529713 - AluY SINE Alu -18 293 1 1615 256 74 55 chr6 47749841 47750335 -141529219 - L1MCc LINE L1 -5420 1521 953 198 91 0 0 chr6 47763869 47763902 -141515652 + (GGGTG)n Simple_repeat Simple_repeat 3 35 0 622 259 123 5 chr6 47768034 47768254 -141511300 + MIR SINE MIR 13 258 -4 2431 97 0 3 chr6 47768355 47768665 -141510889 + AluSc SINE Alu 1 309 0 201 195 98 98 chr6 47769867 47769949 -141509605 + MER5A DNA MER1_type 108 189 0 746 222 140 14 chr6 47771129 47771350 -141508204 - MIR SINE MIR -9 253 5 353 373 37 12 chr6 47771456 47771617 -141507937 - MIR SINE MIR -85 177 13 2491 72 10 0 chr6 47773461 47773766 -141505788 - AluSp SINE Alu -5 308 1 427 274 114 50 chr6 47773932 47774209 -141505345 + MLT1J LTR MaLR 110 419 -92 2472 86 13 0 chr6 47774209 47774512 -141505042 - AluSx SINE Alu -5 307 1 427 274 114 50 chr6 47774512 47774610 -141504944 + MLT1J LTR MaLR 419 509 -2 2205 92 4 4 chr6 47775564 47775870 -141503684 + AluSx SINE Alu 1 306 0 188 284 45 30 chr6 47775951 47776018 -141503536 - MIR3 SINE MIR -52 156 89 345 262 29 10 chr6 47776048 47776151 -141503403 - MIR SINE MIR -6 256 152 260 263 120 0 chr6 47776158 47776310 -141503244 + MLT1J2 LTR MaLR 8 138 -312 441 258 47 84 chr6 47776481 47776614 -141502940 + MER58A DNA MER1_type 1 125 -2295 2234 168 79 123 chr6 47776614 47776999 -141502555 + MER82 DNA MER2_type 1 345 -308 1641 133 39 42 chr6 47776999 47777284 -141502270 + AluSx SINE Alu 9 292 -20 2234 168 79 123 chr6 47777284 47777581 -141501973 + MER82 DNA MER2_type 345 653 0 441 258 47 84 chr6 47777581 47777660 -141501894 + MER58A DNA MER1_type 125 205 -19 264 182 0 65 chr6 47777688 47777765 -141501789 + MLT1I LTR MaLR 324 395 -14 2344 88 3 14 chr6 47777959 47778256 -141501298 + AluSx SINE Alu 1 294 -18 386 172 198 35 chr6 47778264 47778380 -141501174 + MER5A DNA MER1_type 55 189 0 230 224 276 9 chr6 47778488 47778604 -141500950 + MIR SINE MIR 41 187 -75 415 261 92 13 chr6 47779982 47780135 -141499419 + MER112 DNA MER1_type 5 169 -91 388 232 19 35 chr6 47780205 47780379 -141499175 - LTR30 LTR ERV1 -33 746 546 1243 187 193 26 chr6 47780399 47780747 -141498807 - pTR5 LTR ERV1 -638 1800 1395 244 255 0 0 chr6 47780747 47780798 -141498756 - LTR30 LTR ERV1 -670 52 2 2013 100 19 0 chr6 47780798 47781067 -141498487 + AluSg SINE Alu 27 300 -10 252 197 33 33 chr6 47781081 47781142 -141498412 + MER112 DNA MER1_type 194 254 -6 387 226 49 39 chr6 47781254 47781356 -141498198 - L1ME LINE L1 -410 5711 5609 457 319 30 6 chr6 47782029 47782198 -141497356 + MIR SINE MIR 14 186 -76 260 333 27 41 chr6 47782845 47782992 -141496562 + MIR3 SINE MIR 32 176 -32 216 329 40 0 chr6 47783328 47783404 -141496150 + MER91A DNA MER1_type 118 196 0 2292 101 27 0 chr6 47784027 47784324 -141495230 - AluSx SINE Alu -7 305 1 193 273 23 80 chr6 47784727 47784815 -141494739 - MIR SINE MIR -56 206 124 618 318 42 64 chr6 47785071 47785527 -141494027 + MLT1K LTR MaLR 128 573 -15 757 245 30 20 chr6 47785732 47785932 -141493622 + MIR SINE MIR 61 262 0 248 326 43 0 chr6 47786504 47786596 -141492958 - MIR3 SINE MIR -52 156 61 237 280 0 13 chr6 47786656 47786731 -141492823 + MLT1K LTR MaLR 180 253 -335 2280 116 3 0 chr6 47787315 47787617 -141491937 + AluSx SINE Alu 2 304 -8 180 231 215 0 chr6 47787815 47787880 -141491674 - L2 LINE L2 -51 3221 3143 822 256 22 13 chr6 47788319 47788546 -141491008 + MIR SINE MIR 34 262 0 410 171 53 0 chr6 47788766 47788842 -141490712 - L1ME3 LINE L1 -67 6095 6016 503 214 162 55 chr6 47789719 47790028 -141489526 + LTR16A1 LTR ERVL 101 442 -15 228 250 79 26 chr6 47790641 47790717 -141488837 + L2 LINE L2 3184 3263 -9 264 353 7 0 chr6 47791121 47791274 -141488280 + (CA)n Simple_repeat Simple_repeat 1 154 0 422 311 0 22 chr6 47791291 47791474 -141488080 + (CA)n Simple_repeat Simple_repeat 1 179 0 638 263 56 0 chr6 47791875 47792035 -141487519 + MIR SINE MIR 81 249 -13 190 328 17 0 chr6 47792902 47792960 -141486594 - L2 LINE L2 -30 3242 3184 270 81 0 0 chr6 47793311 47793348 -141486206 + (TG)n Simple_repeat Simple_repeat 1 37 0 219 242 88 66 chr6 47795331 47795422 -141484132 - MIR SINE MIR -86 122 30 492 315 157 37 chr6 47795623 47796336 -141483218 - L2 LINE L2 -229 3043 2241 454 258 95 38 chr6 47796593 47796994 -141482560 - LTR33 LTR ERVL -16 505 43 1076 153 0 34 chr6 47797144 47797320 -141482234 - FRAM SINE Alu -6 170 1 2366 86 0 7 chr6 47797837 47798129 -141481425 - AluSx SINE Alu -17 295 6 581 265 71 33 chr6 47798196 47798407 -141481147 - MIR SINE MIR -9 253 35 253 262 0 0 chr6 47798698 47798759 -141480795 - MLT1K LTR MaLR -2 586 526 498 281 186 5 chr6 47798761 47798960 -141480594 - MIR SINE MIR -1 261 27 1233 245 97 11 chr6 47799959 47800331 -141479223 - MLT1I LTR MaLR 0 409 6 369 0 0 0 chr6 47800353 47800394 -141479160 + (CA)n Simple_repeat Simple_repeat 1 41 0 358 200 37 52 chr6 47800930 47801065 -141478489 + (CAGAGA)n Simple_repeat Simple_repeat 5 137 0 408 321 155 0 chr6 47801566 47801862 -141477692 - L2 LINE L2 0 3313 2972 270 286 189 38 chr6 47802173 47802598 -141476956 + L2 LINE L2 2710 3191 -81 326 219 70 9 chr6 47803805 47803919 -141475635 - MLT1J2 LTR MaLR -12 438 318 2293 96 0 7 chr6 47804279 47804582 -141474972 - AluSc SINE Alu -8 301 1 273 100 0 0 chr6 47804657 47804697 -141474857 - Alu SINE Alu -262 40 1 216 211 53 0 chr6 47805183 47805240 -141474314 + MIR SINE MIR 39 98 -164 727 200 0 0 chr6 47806132 47806257 -141473297 - FLAM_C SINE Alu -6 127 3 643 183 0 0 chr6 47806268 47806383 -141473171 - AluSg/x SINE Alu -1 308 194 952 254 115 36 chr6 47806407 47806852 -141472702 + MLT1J LTR MaLR 32 511 0 280 242 77 0 chr6 47807189 47807280 -141472274 - L2 LINE L2 -251 3021 2924 536 299 30 30 chr6 47807375 47807572 -141471982 - MIR SINE MIR -44 218 22 590 274 69 34 chr6 47807916 47808120 -141471434 - MIR SINE MIR -44 218 8 2172 120 3 0 chr6 47810135 47810426 -141469128 + AluSx SINE Alu 2 293 -19 217 264 128 64 chr6 47810595 47810720 -141468834 - L2 LINE L2 -33 3239 3107 882 261 22 9 chr6 47811129 47811355 -141468199 + MIR SINE MIR 34 262 0 408 171 53 0 chr6 47811575 47811651 -141467903 - L1ME3 LINE L1 -67 6095 6016 278 233 41 0 chr6 47811699 47811772 -141467782 + Charlie7 DNA MER1_type 29 104 -2508 268 256 68 34 chr6 47811766 47811880 -141467674 + Charlie7 DNA MER1_type 2440 2557 -55 484 245 117 5 chr6 47811880 47812076 -141467478 + LTR33 LTR ERVL 4 221 -300 338 251 72 24 chr6 47812144 47812311 -141467243 + LTR33 LTR ERVL 340 514 -7 438 260 14 7 chr6 47812683 47812829 -141466725 - LTR33 LTR ERVL -9 512 366 340 224 42 63 chr6 47812944 47813087 -141466467 - LTR33 LTR ERVL -375 146 7 302 338 35 7 chr6 47813686 47813831 -141465723 + MIR SINE MIR 61 209 -53 854 260 173 7 chr6 47814577 47814877 -141464677 - L2 LINE L2 0 3313 2964 342 200 70 0 chr6 47814879 47814979 -141464575 - MER96 DNA MER1_type? 0 175 69 195 356 68 20 chr6 47814986 47815132 -141464422 + L2 LINE L2 2682 2834 -480 23 33 0 0 chr6 47815251 47815281 -141464273 + AT_rich Low_complexity Low_complexity 1 30 0 1089 215 31 86 chr6 47815487 47815873 -141463681 + MLT1A1 LTR MaLR 1 365 0 741 223 23 37 chr6 47815899 47816021 -141463533 - L1ME3A LINE L1 -223 5947 5834 1173 217 14 0 chr6 47816021 47816238 -141463316 - MER58A DNA MER1_type 0 224 5 741 223 23 37 chr6 47816238 47816351 -141463203 - L1ME3A LINE L1 -336 5834 5721 1829 103 0 0 chr6 47816529 47816761 -141462793 - AluSg SINE Alu -78 232 1 311 253 63 89 chr6 47816812 47817002 -141462552 + MLT1I LTR MaLR 198 382 -27 368 297 168 22 chr6 47817615 47817800 -141461754 + L3 LINE CR1 1306 1517 -60 548 223 457 10 chr6 47817808 47818206 -141461348 + L2 LINE L2 2725 3313 0 285 164 36 0 chr6 47818226 47818281 -141461273 + L3 LINE CR1 1514 1570 -7 444 278 107 24 chr6 47818470 47818675 -141460879 - L2 LINE L2 -176 3096 2875 1310 147 115 9 chr6 47818761 47818979 -141460575 - AluJo SINE Alu -68 244 4 323 314 8 42 chr6 47820372 47820490 -141459064 + L1MC4a LINE L1 5798 5911 -1897 228 67 0 0 chr6 47820503 47820533 -141459021 + (TA)n Simple_repeat Simple_repeat 1 30 0 2050 100 43 23 chr6 47820537 47820838 -141458716 - AluSx SINE Alu -5 307 1 273 100 0 0 chr6 47820913 47820953 -141458601 - Alu SINE Alu -260 40 1 216 211 53 0 chr6 47821442 47821499 -141458055 + MIR SINE MIR 39 98 -164 1807 160 12 6 chr6 47822388 47822720 -141456834 + L1MC3 LINE L1 7443 7776 -9 2020 126 3 16 chr6 47823078 47823387 -141456167 - THE1B LTR MaLR -2 362 58 2080 143 0 7 chr6 47823488 47823789 -141455765 + AluSx SINE Alu 6 304 -8 1560 151 74 34 chr6 47823798 47824123 -141455431 - THE1C LTR MaLR -37 338 1 304 239 0 0 chr6 47824125 47824192 -141455362 - L1M4 LINE L1 -1918 4228 4162 728 177 70 12 chr6 47824193 47824432 -141455122 - MER7A DNA MER2_type -2 334 1 898 216 7 81 chr6 47824432 47824476 -141455078 - L1M4 LINE L1 -1982 4164 4118 2133 104 0 17 chr6 47824476 47824790 -141454764 - AluSx SINE Alu 0 309 1 898 216 7 81 chr6 47824790 47825017 -141454537 - L1M4 LINE L1 -2028 4118 3912 2269 92 0 0 chr6 47825129 47825411 -141454143 + AluSc SINE Alu 28 309 0 239 303 0 83 chr6 47825997 47826129 -141453425 - MER94 DNA DNA -12 122 2 290 238 50 12 chr6 47826438 47826518 -141453036 - MIR3 SINE MIR 0 208 126 330 356 110 40 chr6 47826580 47826795 -141452759 + MIR SINE MIR 2 231 -31 407 313 92 26 chr6 47827961 47828156 -141451398 - L1ME4a LINE L1 -223 5898 5691 667 237 124 4 chr6 47828389 47828663 -141450891 + L1M4 LINE L1 3034 3340 -2806 1232 86 0 0 chr6 47828671 47828822 -141450732 + AluSq SINE Alu 85 235 -78 1491 248 78 16 chr6 47828829 47829377 -141450177 + L1M4 LINE L1 3347 3928 -2218 1363 129 0 15 chr6 47829392 47829593 -141449961 + AluSg/x SINE Alu 74 271 -39 821 129 0 7 chr6 47829593 47829733 -141449821 + (GGAA)n Simple_repeat Simple_repeat 4 142 0 2393 99 0 0 chr6 47830592 47830895 -141448659 - AluSx SINE Alu -9 303 1 21 0 0 0 chr6 47830973 47830994 -141448560 + AT_rich Low_complexity Low_complexity 1 21 0 1357 205 56 44 chr6 47833112 47833502 -141446052 - L1ME LINE L1 -413 5753 5363 2338 98 0 16 chr6 47834273 47834588 -141444966 - AluSg SINE Alu 0 310 1 408 243 88 34 chr6 47834842 47834990 -141444564 + L1ME4a LINE L1 5963 6118 -3 182 194 28 0 chr6 47834998 47835034 -141444520 - L2 LINE L2 -16 3256 3220 325 71 0 0 chr6 47835574 47835616 -141443938 + THE1B LTR MaLR 1 42 -322 192 77 0 0 chr6 47836086 47836112 -141443442 + (T)n Simple_repeat Simple_repeat 1 26 0 1755 157 49 0 chr6 47836219 47836505 -141443049 + AluJb SINE Alu 13 312 0 22 35 0 0 chr6 47837200 47837229 -141442325 + AT_rich Low_complexity Low_complexity 1 29 0 1916 146 0 26 chr6 47837313 47837615 -141441939 - AluJb SINE Alu -18 294 1 188 65 0 32 chr6 47838209 47838240 -141441314 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr6 47838762 47838788 -141440766 + (TC)n Simple_repeat Simple_repeat 2 27 0 2127 128 3 7 chr6 47838845 47839150 -141440404 + AluSx SINE Alu 1 304 -8 1878 146 21 79 chr6 47839495 47839913 -141439641 - L1MB8 LINE L1 0 6178 5785 2552 161 27 40 chr6 47840601 47841084 -141438470 - L1MB5 LINE L1 -14 6160 5683 2224 84 10 7 chr6 47841084 47841381 -141438173 - AluY SINE Alu -13 298 1 2552 161 27 40 chr6 47841381 47841444 -141438110 - L1MB5 LINE L1 -491 5683 5621 928 196 0 0 chr6 47841536 47841699 -141437855 - FAM SINE Alu -12 163 1 695 144 40 0 chr6 47842027 47842152 -141437402 - L1MA8 LINE L1 -6 6285 6156 295 209 114 19 chr6 47842690 47842795 -141436759 - MIR SINE MIR -108 154 40 278 258 99 28 chr6 47843097 47843310 -141436244 - L1ME LINE L1 -259 5862 5635 343 230 81 11 chr6 47843987 47844074 -141435480 + L2 LINE L2 3168 3260 -12 7610 166 69 18 chr6 47844280 47845850 -141433704 + L1MC3 LINE L1 5658 7308 -477 348 216 78 47 chr6 47848359 47848591 -141430963 + L1ME LINE L1 5258 5552 -569 * 633 275 32 16 chr6 47848588 47848835 -141430719 - L1MEc LINE L1 -4461 1935 1685 214 140 20 20 chr6 47848885 47848935 -141430619 + T-rich Low_complexity Low_complexity 3 52 0 847 161 0 0 chr6 47848939 47849076 -141430478 - FLAM_C SINE Alu -6 137 1 401 339 23 8 chr6 47849272 47849532 -141430022 + L1MEc LINE L1 1456 1719 -4677 305 312 55 30 chr6 47849611 47849810 -141429744 + L1MEc LINE L1 1844 2047 -4349 592 275 56 30 chr6 47850290 47850507 -141429047 + MIR SINE MIR 12 233 -29 1678 155 14 11 chr6 47850606 47850883 -141428671 - AluJo SINE Alu -34 278 1 883 106 8 23 chr6 47851758 47851890 -141427664 + AluSg/x SINE Alu 165 294 -18 182 393 0 0 chr6 47851966 47852027 -141427527 + L2 LINE L2 3232 3292 -21 22 35 0 0 chr6 47852702 47852731 -141426823 + AT_rich Low_complexity Low_complexity 1 29 0 188 328 0 15 chr6 47853152 47853219 -141426335 - MER5B DNA MER1_type -80 98 33 381 271 154 66 chr6 47854472 47854745 -141424809 - MER102b DNA MER1_type -7 334 38 1424 158 27 72 chr6 47855112 47855262 -141424292 - AluJb SINE Alu -20 292 160 270 73 0 0 chr6 47855262 47855303 -141424251 + (TG)n Simple_repeat Simple_repeat 1 41 0 1424 158 27 72 chr6 47855303 47855444 -141424110 - AluJb SINE Alu -152 160 14 627 205 74 0 chr6 47855504 47855626 -141423928 - FLAM_A SINE Alu -2 131 1 1576 152 147 34 chr6 47856436 47856824 -141422730 + Looper DNA T2_type 20 458 -1100 5992 137 66 35 chr6 47856824 47857115 -141422439 - Tigger3b DNA MER2_type -1798 1230 950 2325 86 3 10 chr6 47857115 47857418 -141422136 + AluSp SINE Alu 11 311 -2 5992 137 66 35 chr6 47857418 47858318 -141421236 - Tigger3b DNA MER2_type -2078 950 2 1576 152 147 34 chr6 47858318 47858337 -141421217 + Looper DNA T2_type 458 473 -1085 22 0 0 0 chr6 47858374 47858396 -141421158 + AT_rich Low_complexity Low_complexity 1 22 0 2997 132 44 64 chr6 47858418 47859030 -141420524 + MER4A LTR ERV1 1 600 0 25 0 0 0 chr6 47859055 47859080 -141420474 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr6 47859145 47859188 -141420366 + AT_rich Low_complexity Low_complexity 1 43 0 657 283 18 40 chr6 47860494 47860720 -141418834 + L1MEc LINE L1 62 282 -6114 670 227 80 25 chr6 47860725 47860888 -141418666 + MER45A DNA AcHobo 6 177 -1 1474 245 72 46 chr6 47860903 47861442 -141418112 + L1MEc LINE L1 289 841 -5555 194 327 0 0 chr6 47861887 47861939 -141417615 + L3 LINE CR1 1523 1574 -3 22 0 0 0 chr6 47863375 47863397 -141416157 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 47863610 47863634 -141415920 + AT_rich Low_complexity Low_complexity 1 24 0 338 130 0 37 chr6 47864189 47864243 -141415311 + Alu SINE Alu 1 52 -249 1686 148 57 11 chr6 47864247 47864511 -141415043 + AluJo SINE Alu 18 293 -19 480 212 247 7 chr6 47864891 47865037 -141414517 + MER5A DNA MER1_type 9 189 0 291 362 8 0 chr6 47865552 47865679 -141413875 + CT-rich Low_complexity Low_complexity 5 132 0 2025 176 148 11 chr6 47866929 47867362 -141412192 - MER6A DNA MER2_type -106 499 8 2385 77 0 7 chr6 47867763 47868061 -141411493 - AluSq SINE Alu -17 296 1 21 36 0 0 chr6 47868084 47868112 -141411442 + AT_rich Low_complexity Low_complexity 1 28 0 184 301 12 48 chr6 47868243 47868326 -141411228 + L2 LINE L2 3226 3305 -8 219 36 0 0 chr6 47869768 47869796 -141409758 + (CA)n Simple_repeat Simple_repeat 2 29 0 2140 117 0 0 chr6 47870279 47870597 -141408957 + AluSx SINE Alu 1 318 0 817 301 74 47 chr6 47870796 47871516 -141408038 + L1MC4 LINE L1 7302 8040 -2 1898 134 0 0 chr6 47872279 47872613 -141406941 + AluSx SINE Alu 27 360 0 838 197 150 18 chr6 47873100 47873374 -141406180 + MER33 DNA MER1_type 15 324 0 318 310 82 69 chr6 47873421 47873666 -141405888 - MIR SINE MIR -6 256 9 728 206 48 48 chr6 47873666 47873855 -141405699 + MER5A DNA MER1_type 1 189 0 482 203 23 30 chr6 47874141 47874274 -141405280 + L2 LINE L2 2869 3000 -313 1403 193 36 36 chr6 47874280 47874617 -141404937 + MLT1A1 LTR MaLR 1 337 -28 301 312 26 0 chr6 47874617 47874694 -141404860 + L2 LINE L2 3210 3288 -25 1237 126 0 6 chr6 47874698 47874872 -141404682 + AluSq SINE Alu 1 173 -140 275 284 0 0 chr6 47875352 47875426 -141404128 - MIR SINE MIR -17 245 172 47 44 0 0 chr6 47876379 47876447 -141403107 + AT_rich Low_complexity Low_complexity 1 68 0 1906 139 0 48 chr6 47876516 47876832 -141402722 - AluJo SINE Alu -11 301 1 437 325 57 81 chr6 47877084 47877221 -141402333 + L2 LINE L2 2468 2607 -665 1709 157 7 52 chr6 47877221 47877526 -141402028 - AluSx SINE Alu -19 293 3 437 325 57 81 chr6 47877526 47877867 -141401687 + L2 LINE L2 2607 2925 -347 1943 113 45 39 chr6 47877867 47878176 -141401378 - AluSx SINE Alu 0 312 2 437 325 57 81 chr6 47878176 47878309 -141401245 + L2 LINE L2 2925 3060 -212 270 219 82 0 chr6 47878347 47878420 -141401134 + L2 LINE L2 3227 3305 -8 670 218 0 48 chr6 47880155 47880189 -141399365 + FLAM_A SINE Alu 1 35 -276 2583 86 36 0 chr6 47880189 47880550 -141399004 - THE1C LTR MaLR -1 374 1 670 218 0 48 chr6 47880550 47880662 -141398892 + FLAM_A SINE Alu 35 140 -171 2111 140 0 0 chr6 47880676 47880983 -141398571 + AluSx SINE Alu 1 307 -5 239 48 0 48 chr6 47881016 47881058 -141398496 + (TGGGGG)n Simple_repeat Simple_repeat 3 42 0 1005 254 35 0 chr6 47881412 47881644 -141397910 + MIR SINE MIR 23 262 0 422 253 148 12 chr6 47882092 47882254 -141397300 + MIR SINE MIR 1 184 -78 342 0 0 0 chr6 47882294 47882332 -141397222 + (T)n Simple_repeat Simple_repeat 1 38 0 198 0 0 0 chr6 47884309 47884331 -141395223 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 1229 243 46 3 chr6 47885211 47885495 -141394059 + L1M4b LINE L1 11 306 -6553 1366 193 94 30 chr6 47885716 47886121 -141393433 + L1M4b LINE L1 1205 1635 -5224 21 0 0 0 chr6 47886182 47886203 -141393351 + AT_rich Low_complexity Low_complexity 1 21 0 690 174 0 9 chr6 47886219 47886334 -141393220 - FLAM_C SINE Alu -19 124 11 1369 200 147 59 chr6 47889226 47889991 -141389563 - L1MC4a LINE L1 -134 7674 6914 558 43 0 0 chr6 47889993 47890062 -141389492 + (TTC)n Simple_repeat Simple_repeat 3 71 0 1349 161 49 63 chr6 47890066 47890352 -141389202 - AluSx SINE Alu -30 282 1 2206 118 3 0 chr6 47890533 47890830 -141388724 - AluSq SINE Alu -13 300 3 465 219 12 94 chr6 47891235 47891395 -141388159 + MER112 DNA MER1_type 13 159 -101 208 171 24 0 chr6 47891397 47891438 -141388116 + (TCTTG)n Simple_repeat Simple_repeat 2 43 0 421 242 17 11 chr6 47891593 47891771 -141387783 + CT-rich Low_complexity Low_complexity 2 180 0 319 269 0 26 chr6 47891773 47891851 -141387703 + C-rich Low_complexity Low_complexity 6 81 0 1244 212 14 28 chr6 47891852 47892020 -141387534 - AluJb SINE Alu -33 279 115 243 0 0 0 chr6 47892020 47892047 -141387507 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1244 212 14 28 chr6 47892047 47892161 -141387393 - AluJb SINE Alu -197 115 1 1956 137 0 7 chr6 47893273 47893611 -141385943 - AluSx SINE Alu 0 336 1 21 0 0 0 chr6 47894823 47894844 -141384710 + AT_rich Low_complexity Low_complexity 1 21 0 2206 101 27 0 chr6 47895263 47895560 -141383994 + AluSx SINE Alu 1 305 -7 902 291 42 18 chr6 47895802 47896139 -141383415 + MLT1I LTR MaLR 63 407 -2 352 268 149 12 chr6 47896656 47896824 -141382730 + MIR SINE MIR 72 262 0 465 242 137 0 chr6 47897098 47897222 -141382332 - MER5A DNA MER1_type -6 183 43 21 0 0 0 chr6 47898714 47898735 -141380819 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 47898955 47898977 -141380577 + AT_rich Low_complexity Low_complexity 1 22 0 436 297 97 0 chr6 47899073 47899238 -141380316 - MIR SINE MIR -58 204 24 2056 124 7 7 chr6 47899302 47899601 -141379953 + AluSx SINE Alu 1 299 -13 1276 253 109 38 chr6 47899724 47900064 -141379490 + L1MC4a LINE L1 5098 5017 -1129 2130 112 7 0 chr6 47900064 47900351 -141379203 + AluSg1 SINE Alu 1 289 -20 1276 253 109 38 chr6 47900351 47900769 -141378785 + L1MC4a LINE L1 5016 5403 -743 332 304 184 25 chr6 47903061 47903219 -141376335 - MIR SINE MIR -69 193 11 876 276 129 9 chr6 47903656 47904112 -141375442 - L1ME2 LINE L1 -285 5879 5369 21 0 0 0 chr6 47904663 47904684 -141374870 + AT_rich Low_complexity Low_complexity 1 21 0 2248 101 0 0 chr6 47904695 47905012 -141374542 + AluSq SINE Alu 1 317 0 451 183 64 94 chr6 47905099 47905301 -141374253 - L1MC4 LINE L1 -6 8036 7841 418 241 32 102 chr6 47905451 47905638 -141373916 - MER5B DNA MER1_type -1 177 4 673 206 91 11 chr6 47905907 47906082 -141373472 + MER5A DNA MER1_type 1 189 0 252 239 104 0 chr6 47906532 47906599 -141372955 - MIR SINE MIR -187 75 2 471 206 143 8 chr6 47906989 47907115 -141372439 + L1MEc LINE L1 36 178 -6218 261 0 0 0 chr6 47907115 47907144 -141372410 + (CA)n Simple_repeat Simple_repeat 2 30 0 1558 240 68 8 chr6 47907151 47907622 -141371932 + L1MEc LINE L1 292 790 -5606 2876 255 146 13 chr6 47907628 47908543 -141371011 + L1MEc LINE L1 839 1998 -4398 1601 186 7 16 chr6 47908543 47908850 -141370704 + AluJb SINE Alu 3 306 -6 2876 255 146 13 chr6 47908850 47909303 -141370251 + L1MEc LINE L1 1998 2389 -4007 1805 240 11 0 chr6 47909336 47909694 -141369860 + L1PA15 LINE L1 1 362 -6425 7795 197 49 35 chr6 47909694 47910671 -141368883 + L1P LINE L1 3261 4223 -1923 2004 126 7 16 chr6 47910671 47910981 -141368573 - AluY SINE Alu -4 307 1 7795 197 49 35 chr6 47910981 47911617 -141367937 + L1P LINE L1 4223 4910 -1236 2083 112 3 7 chr6 47911617 47911912 -141367642 + AluSx SINE Alu 5 298 -14 7795 197 49 35 chr6 47911912 47912281 -141367273 + L1P LINE L1 4910 5272 -874 453 141 35 24 chr6 47912288 47912373 -141367181 + MER21A LTR ERV1 176 261 -670 2546 134 57 98 chr6 47912381 47912961 -141366593 + MER21A LTR ERV1 376 931 0 5033 170 51 18 chr6 47912971 47914375 -141365179 + L1PA15 LINE L1 2895 6816 0 601 251 159 35 chr6 47914370 47914773 -141364781 + HAL1 LINE L1 2049 2501 -6 * 242 243 81 14 chr6 47914819 47914893 -141364661 - MIR3 SINE MIR -51 157 87 27 29 0 0 chr6 47914907 47914941 -141364613 + AT_rich Low_complexity Low_complexity 1 34 0 1767 129 19 77 chr6 47915203 47915566 -141363988 - L1MB3 LINE L1 -4 6179 5838 1695 152 78 0 chr6 47916612 47916881 -141362673 + AluSx SINE Alu 1 290 -22 3036 135 49 2 chr6 47917066 47917555 -141361999 + MER41E LTR ERV1 1 512 0 35 0 0 0 chr6 47918087 47918122 -141361432 + AT_rich Low_complexity Low_complexity 1 35 0 340 288 137 0 chr6 47921088 47921234 -141358320 + MIR SINE MIR 39 204 -58 1032 166 30 0 chr6 47921562 47921731 -141357823 + MSTB LTR MaLR 205 378 -48 2176 107 0 0 chr6 47922244 47922524 -141357030 - AluSg SINE Alu -30 280 1 1377 226 84 36 chr6 47922746 47923172 -141356382 + MLT1C LTR MaLR 18 467 0 283 250 0 0 chr6 47923201 47923265 -141356289 - Charlie7 DNA MER1_type -2511 101 38 709 299 97 64 chr6 47923806 47924439 -141355115 + L1MC4a LINE L1 5275 5937 -184 2066 101 42 3 chr6 47924439 47924726 -141354828 - AluSq SINE Alu -15 298 1 709 299 97 64 chr6 47924726 47924828 -141354726 + L1MC4a LINE L1 5937 6034 -87 1376 211 125 0 chr6 47926396 47926699 -141352855 - MER58B DNA MER1_type 0 341 1 503 235 35 0 chr6 47927442 47927557 -141351997 + MIR SINE MIR 80 198 -64 927 174 90 0 chr6 47927557 47927724 -141351830 - MER8 DNA MER2_type 0 239 58 230 219 0 0 chr6 47927752 47927793 -141351761 + MIR SINE MIR 197 237 -25 250 346 39 0 chr6 47928923 47929001 -141350553 + L2 LINE L2 3229 3309 -4 763 307 11 30 chr6 47929119 47929386 -141350168 + MIR SINE MIR 1 262 0 2282 89 10 0 chr6 47929527 47929831 -141349723 - AluSc SINE Alu -2 307 1 180 0 0 0 chr6 47930182 47930202 -141349352 + (A)n Simple_repeat Simple_repeat 1 20 0 940 269 60 0 chr6 47930354 47930588 -141348966 + MIR SINE MIR 15 262 0 512 249 0 36 chr6 47931375 47931542 -141348012 - MER20 DNA MER1_type 0 219 1 1221 184 0 18 chr6 47931804 47932021 -141347533 - AluJo SINE Alu -55 257 45 1854 148 53 0 chr6 47932197 47932481 -141347073 + AluSx SINE Alu 1 299 -13 563 247 37 19 chr6 47932706 47932868 -141346686 + MER5B DNA MER1_type 14 178 0 375 273 78 13 chr6 47933606 47933810 -141345744 + L1M1 LINE L1 3467 3675 -3890 1316 188 9 9 chr6 47933842 47934066 -141345488 - MER8 DNA MER2_type -1 238 15 944 206 80 10 chr6 47934118 47934317 -141345237 + AluJo SINE Alu 1 213 -99 242 209 9 33 chr6 47934319 47934439 -141345115 + GA-rich Low_complexity Low_complexity 1 117 0 217 130 0 56 chr6 47934434 47934488 -141345066 + (GAAAA)n Simple_repeat Simple_repeat 5 55 0 * 281 270 10 0 chr6 47934511 47934611 -141344943 + L1M1 LINE L1 3734 3834 -3731 1008 220 134 0 chr6 47934635 47934844 -141344710 + MER8 DNA MER2_type 3 239 0 2239 99 7 0 chr6 47934978 47935270 -141344284 - AluSx SINE Alu -15 297 4 300 285 88 44 chr6 47935415 47935552 -141344002 + L1ME3A LINE L1 5795 5937 -233 729 268 67 25 chr6 47935941 47936180 -141343374 - MIR SINE MIR 0 262 14 219 36 0 0 chr6 47936776 47936804 -141342750 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 481 125 38 0 chr6 47938028 47938108 -141341446 - Tigger4(Zombi) DNA MER2_type 0 2731 2649 2270 84 24 0 chr6 47938270 47938568 -141340986 - AluSc SINE Alu -4 305 1 417 191 1 0 chr6 47938813 47938899 -141340655 + MER67A LTR ERV1 3 88 -385 1342 97 6 0 chr6 47938990 47939165 -141340389 - AluSc SINE Alu -6 303 128 2310 187 92 39 chr6 47939165 47939731 -141339823 + MER67B LTR ERV1 66 661 0 367 240 21 21 chr6 47939891 47939987 -141339567 - MIR3 SINE MIR -24 184 89 900 108 0 0 chr6 47940014 47940134 -141339420 - FLAM_C SINE Alu -13 130 11 229 216 0 0 chr6 47940488 47940539 -141339015 + A-rich Low_complexity Low_complexity 1 51 0 29 28 0 0 chr6 47940769 47940805 -141338749 + AT_rich Low_complexity Low_complexity 1 36 0 759 70 113 0 chr6 47941371 47941486 -141338068 + MER85 DNA T2_type 1 128 -11 1777 147 21 11 chr6 47941739 47942025 -141337529 + AluSx SINE Alu 1 289 -23 382 279 93 66 chr6 47942537 47942720 -141336834 - MIR SINE MIR -72 190 3 1658 301 116 51 chr6 47943819 47943876 -141335678 + L2 LINE L2 1871 1923 -1390 1067 209 152 57 chr6 47943876 47944336 -141335218 + MLT1D LTR MaLR 2 505 0 1658 301 116 51 chr6 47944336 47944837 -141334717 + L2 LINE L2 1923 2390 -923 2361 70 3 3 chr6 47944837 47945135 -141334419 - AluSq SINE Alu -14 299 2 1658 301 116 51 chr6 47945135 47945716 -141333838 + L2 LINE L2 2390 3123 -190 1554 173 72 0 chr6 47945716 47945993 -141333561 - AluJo SINE Alu -4 308 12 1658 301 116 51 chr6 47945993 47946198 -141333356 + L2 LINE L2 3123 3313 0 21 0 0 0 chr6 47946223 47946244 -141333310 + AT_rich Low_complexity Low_complexity 1 21 0 5203 125 68 124 chr6 47946740 47948042 -141331512 + Tigger3b DNA MER2_type 2 1230 -1 502 259 89 41 chr6 47948106 47948422 -141331132 - L1ME4a LINE L1 -237 5884 5554 1573 176 0 60 chr6 47948454 47948793 -141330761 - AluJb SINE Alu 0 321 1 221 341 12 0 chr6 47949418 47949500 -141330054 + G-rich Low_complexity Low_complexity 3 85 0 189 0 0 0 chr6 47950483 47950504 -141329050 + (A)n Simple_repeat Simple_repeat 1 21 0 2355 71 14 0 chr6 47951309 47951605 -141327949 + AluSg SINE Alu 1 300 -10 2389 93 3 0 chr6 47952182 47952492 -141327062 + AluY SINE Alu 1 311 0 2547 173 64 32 chr6 47953328 47953861 -141325693 - MER44D DNA MER2_type 0 605 1 2205 108 0 7 chr6 47953884 47954179 -141325375 - AluSc SINE Alu -16 293 1 1323 192 54 0 chr6 47954179 47954455 -141325099 + Tigger1 DNA MER2_type 3 293 -2125 2297 106 3 0 chr6 47954488 47954791 -141324763 + AluSq SINE Alu 1 304 -9 779 100 0 9 chr6 47954812 47954922 -141324632 - U1 snRNA snRNA -1 164 56 4568 142 90 1 chr6 47954923 47955746 -141323808 + Tigger1 DNA MER2_type 280 1175 -1243 992 98 0 0 chr6 47955756 47955888 -141323666 + AluY SINE Alu 1 132 -179 213 39 0 0 chr6 47955888 47955914 -141323640 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 1682 152 30 0 chr6 47955939 47956208 -141323346 + AluSx SINE Alu 22 298 -14 6499 126 76 16 chr6 47956209 47956532 -141323022 + Tigger1 DNA MER2_type 1169 1471 -947 2226 103 0 44 chr6 47956532 47956851 -141322703 + AluSq SINE Alu 1 305 -8 6499 126 76 16 chr6 47956851 47957706 -141321848 + Tigger1 DNA MER2_type 1471 2418 0 263 54 0 0 chr6 47957949 47957986 -141321568 - HY5 scRNA scRNA -47 37 1 245 375 62 19 chr6 47958156 47958316 -141321238 - L3 LINE CR1 -789 788 622 378 0 0 0 chr6 47958484 47958526 -141321028 + (CA)n Simple_repeat Simple_repeat 1 42 0 4794 133 81 20 chr6 47959016 47960084 -141319470 + L1MA8 LINE L1 5159 6287 -4 24 0 0 0 chr6 47960087 47960111 -141319443 + AT_rich Low_complexity Low_complexity 1 24 0 536 291 40 7 chr6 47960288 47960439 -141319115 - MIR SINE MIR -106 156 1 2247 115 0 3 chr6 47960976 47961288 -141318266 + AluSx SINE Alu 1 311 -1 272 259 105 10 chr6 47961631 47961793 -141317761 + L1MC4a LINE L1 7156 7297 -511 765 181 84 0 chr6 47961822 47961977 -141317577 - MER21B LTR ERV1 -369 494 327 237 65 0 0 chr6 47961983 47962014 -141317540 + (T)n Simple_repeat Simple_repeat 1 31 0 445 17 0 0 chr6 47962016 47962075 -141317479 - L1PA2 LINE L1 -1 6154 6096 484 18 0 0 chr6 47962075 47962132 -141317422 + L1HS LINE L1 6028 6084 -71 641 281 133 27 chr6 47962320 47962837 -141316717 + L1MC4 LINE L1 7471 8042 0 1664 209 57 19 chr6 47962848 47963326 -141316228 + L1ME1 LINE L1 5666 6161 -5 3410 175 66 26 chr6 47963666 47964484 -141315070 + L1MB5 LINE L1 5288 6138 -36 348 273 102 48 chr6 47964645 47964832 -141314722 - MIR SINE MIR -3 259 63 205 277 62 0 chr6 47964856 47964921 -141314633 + MIR3 SINE MIR 129 197 -11 280 244 53 42 chr6 47965202 47965328 -141314226 + MER5A DNA MER1_type 40 172 -6 344 194 14 28 chr6 47965714 47965786 -141313768 - L2 LINE L2 -16 3256 3186 740 187 0 29 chr6 47967680 47967819 -141311735 + FLAM_A SINE Alu 6 140 -2 1358 156 6 132 chr6 47968063 47968390 -141311164 - AluJb SINE Alu -26 286 1 1515 142 109 22 chr6 47968923 47969197 -141310357 - AluJb SINE Alu -14 298 1 300 262 61 112 chr6 47969700 47969914 -141309640 + L2 LINE L2 3111 3313 0 307 276 147 0 chr6 47970422 47970538 -141309016 + L1MC/D LINE L1 5724 5856 -1952 1996 249 114 53 chr6 47971149 47971357 -141308197 + L1ME3 LINE L1 4024 4218 -1928 2292 79 0 16 chr6 47971357 47971662 -141307892 + AluY SINE Alu 1 300 -11 1996 249 114 53 chr6 47971662 47972601 -141306953 + L1ME3 LINE L1 4218 5241 -905 1640 279 87 28 chr6 47972739 47973536 -141306018 + L1ME3 LINE L1 5319 6162 0 22 0 0 0 chr6 47973560 47973582 -141305972 + AT_rich Low_complexity Low_complexity 1 22 0 482 261 94 53 chr6 47973596 47973857 -141305697 + L1M4 LINE L1 3418 3667 -2479 264 30 0 0 chr6 47973857 47973890 -141305664 + (CA)n Simple_repeat Simple_repeat 2 34 0 195 69 0 0 chr6 47973897 47973926 -141305628 + (CAGG)n Simple_repeat Simple_repeat 2 30 0 * 841 90 15 8 chr6 47973925 47974058 -141305496 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 482 261 94 53 chr6 47973926 47974298 -141305256 + L1M4 LINE L1 3672 3948 -2198 2290 225 72 119 chr6 47974532 47975103 -141304451 + L1MEc LINE L1 485 1081 -5315 914 97 0 0 chr6 47975103 47975227 -141304327 + AluSp/q SINE Alu 182 305 -8 2290 225 72 119 chr6 47975227 47975885 -141303669 + L1MEc LINE L1 1081 1768 -4628 1415 183 68 37 chr6 47975885 47976180 -141303374 + AluJo SINE Alu 1 304 -8 2290 225 72 119 chr6 47976180 47976297 -141303257 + L1MEc LINE L1 1768 1889 -4507 1825 143 24 3 chr6 47976297 47976584 -141302970 - AluJb SINE Alu -19 293 1 2290 225 72 119 chr6 47976584 47976703 -141302851 + L1MEc LINE L1 1889 1996 -4400 2221 89 0 0 chr6 47976703 47977009 -141302545 + AluSx SINE Alu 1 306 0 2290 225 72 119 chr6 47977009 47977117 -141302437 + L1MEc LINE L1 1996 2107 -4289 * 2563 257 78 6 chr6 47977109 47977484 -141302070 - L1M4 LINE L1 -2136 4508 4161 207 100 0 0 chr6 47977484 47977514 -141302040 + (TG)n Simple_repeat Simple_repeat 2 31 0 2563 257 78 6 chr6 47977514 47978116 -141301438 - L1M4 LINE L1 -2483 4161 3461 677 146 0 36 chr6 47978136 47978246 -141301308 - FLAM_A SINE Alu -36 106 1 1172 224 58 30 chr6 47978247 47978528 -141301026 - L1M4 LINE L1 -3169 3475 3178 2000 130 7 7 chr6 47978528 47978828 -141300726 + AluSx SINE Alu 1 300 -12 1172 224 58 30 chr6 47978828 47978943 -141300611 - L1M4 LINE L1 -3466 3178 3068 248 0 31 0 chr6 47978944 47978976 -141300578 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1034 89 25 51 chr6 47978976 47979134 -141300420 - AluSg/x SINE Alu -51 259 106 270 149 203 0 chr6 47979135 47979209 -141300345 - L1M4 LINE L1 -3591 3053 2965 1140 209 37 31 chr6 47979211 47979536 -141300018 + L1MB7 LINE L1 5730 6056 -128 255 269 62 31 chr6 47979529 47979659 -141299895 - L1M4 LINE L1 -6394 148 15 * 321 318 83 12 chr6 47979990 47980175 -141299379 - MIR3 SINE MIR -56 206 11 443 244 22 139 chr6 47981112 47981428 -141298126 + MLT1L LTR MaLR 110 388 -227 277 133 100 0 chr6 47981454 47981514 -141298040 + MLT1L LTR MaLR 476 541 -74 560 228 8 16 chr6 47981531 47981654 -141297900 + MER5C DNA MER1_type 3 124 -200 256 167 0 0 chr6 47981747 47981795 -141297759 + MLT1L LTR MaLR 551 598 -17 23 54 0 0 chr6 47983123 47983160 -141296394 + AT_rich Low_complexity Low_complexity 1 37 0 1782 169 0 33 chr6 47983535 47983842 -141295712 - AluSx SINE Alu -13 299 3 343 224 13 13 chr6 47984113 47984189 -141295365 - MIR3 SINE MIR -48 160 85 2435 99 0 0 chr6 47984289 47984601 -141294953 - AluSx SINE Alu 0 312 1 526 76 0 0 chr6 47984662 47984728 -141294826 + AluJ/FLAM SINE Alu 14 79 -233 2230 120 0 0 chr6 47984895 47985195 -141294359 - AluSx SINE Alu -12 300 1 2389 97 3 3 chr6 47986034 47986345 -141293209 - AluSp SINE Alu -2 311 1 2452 91 0 0 chr6 47986717 47987026 -141292528 + AluSg1 SINE Alu 1 309 0 1707 185 0 23 chr6 47987315 47987618 -141291936 - AluJo SINE Alu -14 298 3 2022 135 0 43 chr6 47989171 47989497 -141290057 + AluSx SINE Alu 1 312 0 1764 19 0 0 chr6 47989533 47989749 -141289805 - L1HS LINE L1 -1 6154 5939 265 226 20 78 chr6 47990072 47990174 -141289380 - L3b LINE CR1 -113 1470 1375 180 97 0 0 chr6 47991207 47991238 -141288316 + (A)n Simple_repeat Simple_repeat 1 31 0 652 282 112 17 chr6 47992486 47992773 -141286781 + L2 LINE L2 2543 2856 -458 237 262 16 0 chr6 47992812 47992873 -141286681 + MIR SINE MIR 12 73 -189 583 239 98 29 chr6 47992932 47993137 -141286417 + L2 LINE L2 2400 2618 -696 225 0 0 0 chr6 47993179 47993204 -141286350 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 1553 161 4 49 chr6 47994606 47994873 -141284681 + AluJb SINE Alu 21 275 -37 22 0 0 0 chr6 47994902 47994924 -141284630 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 47995348 47995372 -141284182 + AT_rich Low_complexity Low_complexity 1 24 0 833 129 8 8 chr6 47995682 47995806 -141283748 + FLAM_C SINE Alu 1 124 -19 1741 133 4 157 chr6 47995823 47996019 -141283535 + MLT1B LTR MaLR 1 89 -301 2447 76 7 0 chr6 47996019 47996323 -141283231 - AluSp SINE Alu -7 306 1 1741 133 4 157 chr6 47996323 47996586 -141282968 + MLT1B LTR MaLR 89 390 0 840 165 136 49 chr6 47996586 47996829 -141282725 + MER58B DNA MER1_type 74 337 -4 2269 71 3 42 chr6 47997269 47997580 -141281974 - AluY SINE Alu -12 299 1 1329 192 58 46 chr6 47997680 47998075 -141281479 + L1ME3A LINE L1 5655 6054 -116 1668 256 42 38 chr6 47998175 47998891 -141280663 + L1ME LINE L1 590 1308 -5326 1039 236 4 8 chr6 47998900 47999141 -141280413 - L1MC4a LINE L1 -68 7740 7501 664 235 148 25 chr6 47999140 47999682 -141279872 + L1ME LINE L1 1164 1700 -4842 * 915 172 28 0 chr6 47999711 47999856 -141279698 + FRAM SINE Alu 1 147 -29 2313 97 10 0 chr6 47999938 48000237 -141279317 - AluSx SINE Alu -10 302 1 1038 131 100 0 chr6 48000237 48000397 -141279157 - AluJb SINE Alu -3 309 134 1450 249 135 28 chr6 48000397 48000745 -141278809 + L1ME LINE L1 3366 3675 -2969 1655 161 27 30 chr6 48000745 48001043 -141278511 + AluJo SINE Alu 1 297 -15 1450 249 135 28 chr6 48001043 48001099 -141278455 + L1ME LINE L1 3675 3724 -2920 2237 89 20 10 chr6 48001099 48001403 -141278151 + AluSx SINE Alu 1 307 -5 1450 249 135 28 chr6 48001403 48001864 -141277690 + L1ME LINE L1 3724 4325 -2319 505 207 23 11 chr6 48002336 48002510 -141277044 + L1ME LINE L1 4363 4538 -2106 442 181 95 60 chr6 48004435 48004551 -141275003 + FLAM_C SINE Alu 1 120 -23 1747 165 29 32 chr6 48005110 48005358 -141274196 - MER2 DNA MER2_type 0 345 97 2148 123 7 0 chr6 48005358 48005659 -141273895 - AluSx SINE Alu -9 303 1 1747 165 29 32 chr6 48005659 48005750 -141273804 - MER2 DNA MER2_type -248 97 7 384 77 0 0 chr6 48005766 48005818 -141273736 + (TG)n Simple_repeat Simple_repeat 2 53 0 299 200 0 24 chr6 48005823 48005908 -141273646 + (CATA)n Simple_repeat Simple_repeat 1 83 0 190 100 0 0 chr6 48006684 48006714 -141272840 - L2 LINE L2 -85 3228 3199 270 48 0 24 chr6 48007126 48007168 -141272386 - MADE1 DNA Mariner -1 79 39 1427 164 17 74 chr6 48007824 48008152 -141271402 - AluJo SINE Alu 0 311 1 256 185 13 89 chr6 48008324 48008481 -141271073 + A-rich Low_complexity Low_complexity 5 149 0 332 308 70 7 chr6 48008935 48009078 -141270476 + MIR SINE MIR 98 249 -13 2068 134 10 0 chr6 48009280 48009579 -141269975 - AluSx SINE Alu -10 302 1 180 0 0 0 chr6 48009899 48009919 -141269635 + (A)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr6 48010264 48010285 -141269269 + AT_rich Low_complexity Low_complexity 1 21 0 2052 97 42 39 chr6 48010386 48010694 -141268860 + AluSq SINE Alu 1 309 -4 318 120 0 0 chr6 48010696 48010746 -141268808 + Alu SINE Alu 247 296 -6 467 304 190 0 chr6 48011320 48011478 -141268076 - MIR SINE MIR -58 204 17 1215 161 26 0 chr6 48013414 48013606 -141265948 + AluJb SINE Alu 97 293 -19 227 158 134 12 chr6 48013607 48013689 -141265865 + MER69 DNA AcHobo 2297 2388 -138 21 0 0 0 chr6 48013722 48013743 -141265811 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr6 48013825 48013874 -141265680 + AT_rich Low_complexity Low_complexity 1 49 0 1349 160 124 25 chr6 48014262 48014544 -141265010 + AluSg SINE Alu 1 310 0 2095 121 0 23 chr6 48015106 48015411 -141264143 + AluSx SINE Alu 2 299 -13 198 0 0 0 chr6 48015570 48015592 -141263962 + (A)n Simple_repeat Simple_repeat 1 22 0 580 204 15 30 chr6 48015888 48016020 -141263534 + MIR SINE MIR 123 252 -10 2399 84 3 0 chr6 48016306 48016604 -141262950 + AluSp SINE Alu 1 299 -14 210 71 0 0 chr6 48017119 48017147 -141262407 + (T)n Simple_repeat Simple_repeat 1 28 0 1210 150 11 0 chr6 48017663 48017850 -141261704 + AluSg/x SINE Alu 119 307 -3 894 157 11 58 chr6 48018176 48018367 -141261187 - MER20 DNA MER1_type -36 183 2 245 284 52 60 chr6 48018368 48018484 -141261070 - MIR3 SINE MIR -48 160 46 444 120 0 61 chr6 48019270 48019512 -141260042 + AluSx SINE Alu 1 303 -9 645 154 9 18 chr6 48019658 48019768 -141259786 + FLAM_A SINE Alu 1 109 -33 1666 158 63 0 chr6 48019789 48020092 -141259462 - MER7A DNA MER2_type -1 345 26 308 260 160 0 chr6 48020124 48020224 -141259330 + L2 LINE L2 3196 3311 -2 2400 96 0 3 chr6 48020847 48021160 -141258394 + AluSq SINE Alu 1 312 -1 270 185 0 37 chr6 48022500 48022554 -141257000 + MER105 DNA DNA 4 55 -149 757 161 49 19 chr6 48022575 48022737 -141256817 - MER58B DNA MER1_type -37 304 138 620 186 0 0 chr6 48022839 48022957 -141256597 + MER105 DNA DNA 47 164 -40 2155 94 0 0 chr6 48022988 48023263 -141256291 - AluSc SINE Alu -34 275 1 21 71 0 0 chr6 48023319 48023361 -141256193 + AT_rich Low_complexity Low_complexity 1 42 0 2355 102 0 0 chr6 48023547 48023852 -141255702 + AluY SINE Alu 2 306 -5 245 259 0 0 chr6 48023893 48023947 -141255607 + MIR SINE MIR 48 101 -161 424 193 0 64 chr6 48024111 48024220 -141255334 - FLAM_A SINE Alu -10 132 31 606 233 16 33 chr6 48025339 48025491 -141254063 + MLT1H1 LTR MaLR 2 193 -356 2366 68 0 33 chr6 48025517 48025824 -141253730 - AluY SINE Alu -14 297 1 2163 81 0 0 chr6 48025976 48026249 -141253305 + AluY SINE Alu 1 273 -38 234 92 31 46 chr6 48026249 48026314 -141253240 + GA-rich Low_complexity Low_complexity 3 66 0 1613 167 19 47 chr6 48026333 48026650 -141252904 + AluJb SINE Alu 1 308 -4 2380 77 0 7 chr6 48027055 48027353 -141252201 - AluY SINE Alu -15 296 1 2198 121 7 0 chr6 48027417 48027715 -141251839 - AluSx SINE Alu -10 302 3 658 188 59 118 chr6 48027986 48028290 -141251264 + L1ME2 LINE L1 5751 6036 -128 1581 202 70 3 chr6 48028338 48028680 -141250874 + MLT1A1 LTR MaLR 1 365 0 347 242 0 11 chr6 48028681 48028772 -141250782 + L1ME2 LINE L1 6074 6163 -1 2134 78 3 3 chr6 48028774 48029080 -141250474 + AluY SINE Alu 1 306 0 328 301 153 6 chr6 48029111 48029274 -141250280 + L1MC4 LINE L1 7826 8012 -30 21 0 0 0 chr6 48029623 48029644 -141249910 + AT_rich Low_complexity Low_complexity 1 21 0 1204 195 36 69 chr6 48029779 48030158 -141249396 + L1MB7 LINE L1 4447 4814 -1332 2102 122 0 3 chr6 48030158 48030453 -141249101 + AluSq SINE Alu 1 294 -19 4067 162 39 52 chr6 48030463 48030744 -141248810 + L1MB7 LINE L1 5006 5289 -895 2365 87 0 0 chr6 48030744 48031053 -141248501 + AluSc SINE Alu 1 309 0 4067 162 39 52 chr6 48031053 48031075 -141248479 + L1MB7 LINE L1 5289 5310 -874 2340 90 0 3 chr6 48031075 48031374 -141248180 + AluSx SINE Alu 1 298 -14 4067 162 39 52 chr6 48031374 48032254 -141247300 + L1MB7 LINE L1 5310 6166 -18 2372 84 3 7 chr6 48032751 48033050 -141246504 + AluSp SINE Alu 1 298 -15 198 273 191 29 chr6 48034028 48034237 -141245317 + L2 LINE L2 1933 2175 -1139 191 195 138 115 chr6 48034297 48034384 -141245170 + MER5B DNA MER1_type 61 149 -29 313 257 55 49 chr6 48034637 48034820 -141244734 + L1MC4a LINE L1 5758 5941 -1867 23 54 0 0 chr6 48034978 48035015 -141244539 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 48035069 48035092 -141244462 + AT_rich Low_complexity Low_complexity 1 23 0 1808 158 10 3 chr6 48035100 48035397 -141244157 + AluJb SINE Alu 1 299 -13 786 273 80 0 chr6 48035400 48035689 -141243865 + L1ME3A LINE L1 5280 5591 -571 411 296 0 17 chr6 48035705 48035877 -141243677 + (TA)n Simple_repeat Simple_repeat 2 170 0 4715 141 30 11 chr6 48035890 48036712 -141242842 + L1MC1 LINE L1 5486 6323 -10 2325 80 7 7 chr6 48036713 48037014 -141242540 - AluSx SINE Alu -11 301 1 702 210 50 46 chr6 48037124 48037343 -141242211 + L1ME3A LINE L1 5946 6165 -5 1579 147 17 0 chr6 48037367 48037598 -141241956 + 7SLRNA srpRNA srpRNA 16 250 -70 1448 162 0 53 chr6 48037598 48037863 -141241691 + AluJo SINE Alu 30 280 -32 200 246 18 18 chr6 48037863 48037920 -141241634 + GA-rich Low_complexity Low_complexity 3 59 0 535 165 101 0 chr6 48038429 48038538 -141241016 + Charlie4 DNA MER1_type 1833 1952 -9 430 299 93 83 chr6 48038543 48039136 -141240418 + L2 LINE L2 2628 3247 -25 218 225 192 42 chr6 48039328 48039448 -141240106 - MIR SINE MIR -14 248 111 210 71 0 0 chr6 48040992 48041020 -141238534 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2049 125 4 0 chr6 48041022 48041302 -141238252 - AluSx SINE Alu -30 282 2 529 192 0 20 chr6 48041311 48041410 -141238144 - 7SLRNA srpRNA srpRNA -6 314 218 2430 66 0 7 chr6 48041607 48041910 -141237644 + AluY SINE Alu 1 301 -10 207 253 24 48 chr6 48043422 48043505 -141236049 - MIR3 SINE MIR -18 190 110 762 253 89 0 chr6 48043560 48043750 -141235804 + MER3 DNA MER1_type 1 207 -2 1967 152 3 0 chr6 48043789 48044085 -141235469 - AluSx SINE Alu -15 297 1 25 0 0 0 chr6 48045017 48045042 -141234512 + AT_rich Low_complexity Low_complexity 1 25 0 1958 99 58 27 chr6 48046481 48046774 -141232780 + AluSp SINE Alu 1 302 -11 299 265 37 66 chr6 48047495 48047631 -141231923 + L2 LINE L2 2714 2845 -469 319 328 58 42 chr6 48047723 48047912 -141231642 + L2 LINE L2 2894 3085 -187 2084 141 0 3 chr6 48048422 48048726 -141230828 + AluSx SINE Alu 1 303 -9 294 274 126 0 chr6 48048995 48049130 -141230424 + MIR SINE MIR 61 212 -50 33 25 0 0 chr6 48050494 48050534 -141229020 + GC_rich Low_complexity Low_complexity 1 40 0 212 98 0 24 chr6 48050617 48050658 -141228896 + (CGG)n Simple_repeat Simple_repeat 1 40 0 287 266 0 0 chr6 48050679 48050773 -141228781 + G-rich Low_complexity Low_complexity 2 95 0 2264 81 6 41 chr6 48052545 48052865 -141226689 + AluSq SINE Alu 1 309 -4 228 284 15 0 chr6 48053125 48053192 -141226362 - L2 LINE L2 -3 3310 3243 196 274 186 18 chr6 48053225 48053338 -141226216 + L2 LINE L2 2779 2910 -404 276 292 283 12 chr6 48053996 48054236 -141225318 + L2 LINE L2 3008 3312 -1 185 309 0 0 chr6 48055663 48055718 -141223836 + MIR3 SINE MIR 144 198 -10 1204 185 0 289 chr6 48056272 48056579 -141222975 - MLT2B1 LTR ERVL -4 410 148 1724 173 51 67 chr6 48056579 48056620 -141222934 - MLT1A1 LTR MaLR 0 365 325 2701 49 0 0 chr6 48056620 48056926 -141222628 + AluY SINE Alu 1 306 -5 1724 173 51 67 chr6 48056926 48057255 -141222299 - MLT1A1 LTR MaLR -40 325 1 1204 185 0 289 chr6 48057255 48057357 -141222197 - MLT2B1 LTR ERVL -266 148 1 519 214 0 0 chr6 48057398 48057501 -141222053 + MIR SINE MIR 37 139 -123 855 238 59 35 chr6 48057695 48057951 -141221603 + MLT1K LTR MaLR 322 583 -5 186 248 0 124 chr6 48057955 48058053 -141221501 + MIR SINE MIR 150 230 -32 2519 84 0 0 chr6 48058053 48058361 -141221193 + AluSx SINE Alu 1 308 -4 186 248 0 124 chr6 48058361 48058391 -141221163 + MIR SINE MIR 230 262 0 181 156 0 0 chr6 48058486 48058518 -141221036 - L2 LINE L2 0 3272 3241 1315 207 0 20 chr6 48058518 48058764 -141220790 - MSTA LTR MaLR 0 428 188 2325 80 3 0 chr6 48058765 48059052 -141220502 - AluY SINE Alu -9 302 15 636 265 78 62 chr6 48059052 48059142 -141220412 - L1ME LINE L1 -393 5728 5641 2243 113 0 3 chr6 48059142 48059435 -141220119 + AluSq SINE Alu 1 292 -21 2232 119 0 0 chr6 48059444 48059746 -141219808 + AluY SINE Alu 1 302 -9 636 265 78 62 chr6 48059746 48060082 -141219472 - L1ME LINE L1 -487 5634 5285 2311 81 3 0 chr6 48060099 48060431 -141219123 - AluSq SINE Alu 0 333 1 252 0 0 0 chr6 48060531 48060559 -141218995 + (TTA)n Simple_repeat Simple_repeat 3 30 0 2374 29 4 0 chr6 48060559 48060836 -141218718 - L1PA4 LINE L1 -18 6137 5860 2259 83 21 0 chr6 48061604 48061893 -141217661 + AluY SINE Alu 2 296 -15 295 196 0 4 chr6 48061899 48062029 -141217525 - LTR16C LTR ERVL 0 491 317 480 273 56 31 chr6 48062129 48062290 -141217264 - LTR16C LTR ERVL -326 165 1 313 311 49 0 chr6 48063242 48063364 -141216190 - MIR SINE MIR -110 152 25 1199 170 8 33 chr6 48063396 48063637 -141215917 + L1ME3A LINE L1 5810 6044 -126 1217 189 24 0 chr6 48063648 48063854 -141215700 - AluJo SINE Alu -45 267 57 562 231 15 0 chr6 48063864 48063994 -141215560 + L1ME3A LINE L1 6039 6170 0 303 365 61 6 chr6 48064275 48064456 -141215098 + MIR SINE MIR 58 248 -14 182 250 78 0 chr6 48064473 48064537 -141215017 + L3 LINE CR1 1214 1282 -295 1654 138 16 83 chr6 48064683 48064995 -141214559 + AluJo SINE Alu 1 291 -21 2379 106 0 3 chr6 48065001 48065313 -141214241 + AluSx SINE Alu 1 311 -1 300 216 15 34 chr6 48065804 48065899 -141213655 - MLT1J LTR MaLR 0 549 410 420 214 0 58 chr6 48065913 48066016 -141213538 + AluJ/FRAM SINE Alu 216 312 0 370 108 31 0 chr6 48066024 48066089 -141213465 + L1MB7 LINE L1 5157 5223 -923 396 0 0 0 chr6 48066103 48066147 -141213407 + (CA)n Simple_repeat Simple_repeat 2 45 0 3194 163 55 60 chr6 48066147 48066192 -141213362 + L1MB7 LINE L1 5279 5323 -861 1520 238 0 3 chr6 48066192 48066499 -141213055 + AluJb SINE Alu 1 306 -6 3194 163 55 60 chr6 48066499 48067017 -141212537 + L1MB7 LINE L1 5323 5843 -341 2014 157 0 0 chr6 48067017 48067323 -141212231 + AluJo SINE Alu 3 308 -4 3194 163 55 60 chr6 48067323 48067473 -141212081 + L1MB7 LINE L1 5843 5992 -192 1288 192 66 7 chr6 48067594 48067865 -141211689 - AluJo SINE Alu -25 287 1 507 145 140 162 chr6 48067878 48067898 -141211656 - L1ME3 LINE L1 -3 6159 6140 553 101 13 0 chr6 48067898 48067977 -141211577 + MADE1 DNA Mariner 1 80 0 507 145 140 162 chr6 48067977 48068088 -141211466 - L1ME3 LINE L1 -22 6140 6033 2298 101 0 3 chr6 48068088 48068384 -141211170 + AluSx SINE Alu 1 295 -17 507 145 140 162 chr6 48068384 48068486 -141211068 - L1ME3 LINE L1 -129 6033 5930 433 246 82 0 chr6 48069029 48069139 -141210415 - MIR SINE MIR -119 143 25 266 282 0 13 chr6 48069141 48069219 -141210335 + L2 LINE L2 3183 3259 -13 1029 119 0 0 chr6 48069794 48069937 -141209617 - AluSg/x SINE Alu -2 308 166 2236 102 0 3 chr6 48070073 48070366 -141209188 + AluSq SINE Alu 1 292 -21 515 217 26 0 chr6 48072622 48072737 -141206817 + MIR SINE MIR 104 221 -41 225 233 0 0 chr6 48072742 48072785 -141206769 + AluJb SINE Alu 1 43 -258 2140 101 0 20 chr6 48072785 48073083 -141206471 - AluSx SINE Alu -20 292 1 1736 116 0 26 chr6 48073083 48073350 -141206204 + AluJb SINE Alu 24 283 -29 2520 72 3 0 chr6 48073567 48073874 -141205680 - AluSg SINE Alu -2 308 1 498 279 89 0 chr6 48074049 48074207 -141205347 + MIR SINE MIR 3 174 -88 968 189 0 0 chr6 48074207 48074371 -141205183 - FRAM SINE Alu -13 163 1 254 277 12 12 chr6 48074371 48074454 -141205100 + MIR SINE MIR 164 246 -16 667 200 0 0 chr6 48074465 48074616 -141204938 - FLAM_A SINE Alu 0 133 1 1853 157 41 0 chr6 48074920 48075213 -141204341 + AluJb SINE Alu 1 305 -7 330 297 95 7 chr6 48075466 48075614 -141203940 + L2 LINE L2 3108 3268 -4 204 202 194 73 chr6 48075645 48075769 -141203785 - MIR SINE MIR -13 249 111 1073 253 140 42 chr6 48075773 48076026 -141203528 - MLT1J LTR MaLR -8 503 194 2323 89 7 0 chr6 48076026 48076319 -141203235 - AluSc SINE Alu -14 295 1 1073 253 140 42 chr6 48076319 48076473 -141203081 - MLT1J LTR MaLR -317 194 56 31 0 0 0 chr6 48076473 48076504 -141203050 + AT_rich Low_complexity Low_complexity 1 31 0 1830 149 0 0 chr6 48076504 48076766 -141202788 - AluSx SINE Alu -11 301 40 843 156 0 0 chr6 48076770 48076898 -141202656 - FLAM_C SINE Alu -5 128 1 248 271 0 14 chr6 48076953 48077023 -141202531 - MIR SINE MIR -145 117 49 182 250 89 0 chr6 48077823 48077879 -141201675 + MIR SINE MIR 78 138 -70 639 237 90 28 chr6 48077910 48078121 -141201433 + L1ME3 LINE L1 5937 6160 -2 2268 95 0 70 chr6 48078132 48078459 -141201095 + AluSq SINE Alu 1 304 -9 270 301 19 58 chr6 48079597 48079700 -141199854 - L2 LINE L2 0 3272 3174 190 80 0 0 chr6 48079774 48079799 -141199755 + MIR SINE MIR 73 97 -165 636 270 36 27 chr6 48079824 48080044 -141199510 - MIR SINE MIR -26 236 18 423 200 10 91 chr6 48080356 48080434 -141199120 + L1ME LINE L1 5644 5715 -447 2408 101 0 3 chr6 48080434 48080742 -141198812 + AluSx SINE Alu 1 307 -5 423 200 10 91 chr6 48080742 48080805 -141198749 + L1ME LINE L1 5715 5782 -380 381 273 0 0 chr6 48080807 48080895 -141198659 + AluJ/FLAM SINE Alu 1 88 -214 247 77 26 26 chr6 48080997 48081036 -141198518 + THE1A LTR MaLR 317 355 0 2119 232 90 10 chr6 48081040 48082344 -141197210 + L1ME1 LINE L1 4230 5691 -475 441 267 0 0 chr6 48082344 48082430 -141197124 + FRAM/FAM SINE Alu 1 84 -92 816 158 30 24 chr6 48082432 48082597 -141196957 + L1ME1 LINE L1 5738 5903 -263 1743 180 31 0 chr6 48082602 48082891 -141196663 + AluJo SINE Alu 5 302 -10 1612 116 0 25 chr6 48082927 48083169 -141196385 + AluSq SINE Alu 1 236 -77 1008 185 67 0 chr6 48083647 48083842 -141195712 - MER3 DNA MER1_type 0 209 2 23 0 0 0 chr6 48084577 48084600 -141194954 + AT_rich Low_complexity Low_complexity 1 23 0 1479 154 97 41 chr6 48085289 48085584 -141193970 - AluJo SINE Alu 0 310 1 2196 80 0 14 chr6 48086349 48086671 -141192883 - AluY SINE Alu 0 318 1 256 258 41 0 chr6 48086916 48087013 -141192541 - L1MC4 LINE L1 0 8042 7942 306 87 0 0 chr6 48087128 48087174 -141192380 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 755 148 0 0 chr6 48087175 48087283 -141192271 - AluSx SINE Alu -43 269 162 428 36 18 18 chr6 48087280 48087336 -141192218 - AluSx SINE Alu -187 126 71 * 1928 178 16 14 chr6 48087628 48087993 -141191561 + MER47A DNA MER2_type 1 366 0 1760 141 145 0 chr6 48088049 48088353 -141191201 + MER7A DNA MER2_type 1 346 0 463 220 0 37 chr6 48088458 48088567 -141190987 + AluJb SINE Alu 3 107 -205 1924 238 133 9 chr6 48089554 48090095 -141189459 + L1MC4 LINE L1 6479 7086 -956 1390 258 144 13 chr6 48090103 48090666 -141188888 + L1MC4 LINE L1 7224 7897 -145 440 268 147 6 chr6 48090733 48090919 -141188635 + MIR SINE MIR 32 241 -21 1757 162 15 4 chr6 48091238 48091509 -141188045 + AluJb SINE Alu 12 285 -27 231 182 164 0 chr6 48091942 48091997 -141187557 + MER5C DNA MER1_type 1 64 -260 670 224 148 19 chr6 48092002 48092266 -141187288 + MER5C DNA MER1_type 24 321 -3 462 283 102 6 chr6 48092297 48092474 -141187080 - MIR SINE MIR -1 261 68 8832 161 73 6 chr6 48093673 48094096 -141185458 - L1 LINE L1 -2865 4700 4307 5628 64 6 31 chr6 48094096 48094802 -141184752 - LTR12 LTR ERV1 0 688 1 8832 161 73 6 chr6 48094802 48096194 -141183360 - L1 LINE L1 -3258 4307 1145 1440 195 40 18 chr6 48096209 48096481 -141183073 - AluJb SINE Alu -24 288 11 261 155 121 0 chr6 48097109 48097167 -141182387 - MIR SINE MIR -70 192 128 7893 127 47 24 chr6 48197969 48198005 -141081549 + L1MA3 LINE L1 3741 3775 -2530 2166 107 31 0 chr6 48198005 48198296 -141081258 + AluSx SINE Alu 3 302 -10 7893 127 47 24 chr6 48198296 48199883 -141079671 + L1MA3 LINE L1 3775 5324 -981 2313 98 3 0 chr6 48199883 48200189 -141079365 + AluSx SINE Alu 1 307 -5 7893 127 47 24 chr6 48200189 48200933 -141078621 + L1MA3 LINE L1 5324 6178 -127 2124 84 11 11 chr6 48200933 48201250 -141078304 + AluSx SINE Alu 1 317 0 7893 127 47 24 chr6 48201250 48201382 -141078172 + L1MA3 LINE L1 6178 6305 0 2191 86 36 0 chr6 48202333 48202613 -141076941 + AluSc SINE Alu 1 290 -19 2193 107 4 0 chr6 48202641 48202956 -141076598 - AluSx SINE Alu 0 316 1 1878 156 13 7 chr6 48203123 48203252 -141076302 + AluJb SINE Alu 3 130 -182 198 0 0 0 chr6 48203252 48203274 -141076280 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1878 156 13 7 chr6 48203274 48203445 -141076109 + AluJb SINE Alu 130 305 -7 2096 140 3 7 chr6 48206260 48206567 -141072987 + AluSx SINE Alu 1 306 -6 686 182 8 8 chr6 48206972 48207093 -141072461 - L2 LINE L2 0 3313 3193 670 175 103 0 chr6 48207315 48207441 -141072113 + FLAM_C SINE Alu 3 141 -2 2297 114 0 0 chr6 48207471 48207778 -141071776 - AluSg SINE Alu -3 307 1 200 229 21 0 chr6 48207896 48207944 -141071610 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 302 281 49 0 chr6 48208075 48208157 -141071397 - L1MC4 LINE L1 -1339 6703 6618 229 104 0 0 chr6 48208157 48208205 -141071349 + LTR66 LTR ERVL 394 441 -169 5287 135 36 5 chr6 48208725 48209519 -141070035 + L1MA6 LINE L1 4975 5820 -480 366 23 0 0 chr6 48209519 48209562 -141069992 + (TA)n Simple_repeat Simple_repeat 2 44 0 5287 135 36 5 chr6 48209562 48210020 -141069534 + L1MA6 LINE L1 5820 6263 -37 19947 29 0 0 chr6 48210020 48213188 -141066366 + L1PA4 LINE L1 2988 6155 0 2817 116 21 29 chr6 48213188 48213664 -141065890 + L1MA4A LINE L1 5814 6291 -12 21 0 0 0 chr6 48213719 48213740 -141065814 + AT_rich Low_complexity Low_complexity 1 21 0 2257 82 0 47 chr6 48213889 48214207 -141065347 + AluY SINE Alu 1 303 -8 1200 250 66 90 chr6 48214399 48214666 -141064888 + L1MC/D LINE L1 2279 2551 -3595 2188 106 7 0 chr6 48214666 48214958 -141064596 - AluSg SINE Alu -16 294 1 1200 250 66 90 chr6 48214958 48215738 -141063816 + L1MC/D LINE L1 2551 3301 -2845 205 256 0 0 chr6 48215830 48215869 -141063685 + polypurine Low_complexity Low_complexity 3 41 0 403 290 31 53 chr6 48215888 48215969 -141063585 + L1MC/D LINE L1 4741 4822 -1324 2161 132 3 10 chr6 48215969 48216280 -141063274 - AluSx SINE Alu -3 309 1 403 290 31 53 chr6 48216280 48216553 -141063001 + L1MC/D LINE L1 4822 5087 -1059 1935 158 0 3 chr6 48216579 48216863 -141062691 + AluJo SINE Alu 2 284 -28 250 232 115 43 chr6 48216978 48217184 -141062370 + L1MC/D LINE L1 5300 5522 -656 6840 50 5 8 chr6 48217229 48218902 -141060652 - L1PA7 LINE L1 0 6154 4468 11359 72 2 7 chr6 48218902 48219780 -141059774 + L1P LINE L1 2828 3694 -2452 2345 102 0 6 chr6 48219780 48220094 -141059460 + AluSq SINE Alu 1 312 -1 11359 72 2 7 chr6 48220094 48220856 -141058698 + L1P LINE L1 3694 4459 -1687 428 245 79 66 chr6 48220851 48221132 -141058422 + L1MC/D LINE L1 5540 5825 -359 * 959 215 71 71 chr6 48221180 48221575 -141057979 + MLT1I LTR MaLR 1 395 -14 1611 203 0 3 chr6 48222662 48222953 -141056601 - AluSx SINE Alu -22 290 1 2136 102 24 3 chr6 48223096 48223390 -141056164 - AluSx SINE Alu -8 304 5 3317 119 36 57 chr6 48224305 48224601 -141054953 - MER7C DNA MER2_type -2426 602 301 812 134 0 37 chr6 48224601 48224735 -141054819 + FLAM_C SINE Alu 3 131 -2 3317 119 36 57 chr6 48224735 48224899 -141054655 - MER7C DNA MER2_type -2727 301 135 315 0 0 0 chr6 48224899 48224934 -141054620 + (TG)n Simple_repeat Simple_repeat 2 36 0 2380 108 0 0 chr6 48224937 48225244 -141054310 - AluSq SINE Alu -6 307 1 3317 119 36 57 chr6 48225244 48225392 -141054162 - MER7C DNA MER2_type -2895 133 2 258 136 0 0 chr6 48225506 48225550 -141054004 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 575 320 55 39 chr6 48226053 48226309 -141053245 - L3 LINE CR1 -1282 295 36 427 277 48 59 chr6 48226542 48226813 -141052741 + L2 LINE L2 2317 2584 -730 1590 164 0 4 chr6 48228434 48228678 -141050876 - AluJo SINE Alu -69 243 1 1085 231 129 36 chr6 48228988 48229438 -141050116 - L2 LINE L2 -1 3312 2821 22 0 0 0 chr6 48230590 48230612 -141048942 + AT_rich Low_complexity Low_complexity 1 22 0 411 120 0 27 chr6 48234213 48234288 -141045266 - L1MB8 LINE L1 0 6178 6106 2297 101 0 0 chr6 48234410 48234706 -141044848 + AluSx SINE Alu 1 296 -16 7576 25 1 0 chr6 48235535 48237114 -141042440 - L1PA4 LINE L1 -3 6152 4573 6958 24 1 0 chr6 48237114 48237964 -141041590 + L1P LINE L1 3602 4452 -1694 980 221 26 66 chr6 48238417 48238689 -141040865 + Tigger7 DNA MER2_type 7 267 -2220 443 192 0 58 chr6 48238688 48238792 -141040762 + Tigger7 DNA MER2_type 2390 2487 0 * 517 143 0 17 chr6 48240364 48240506 -141039048 - MER58B DNA MER1_type -2 339 45 2327 67 0 3 chr6 48244078 48244386 -141035168 - AluY SINE Alu 0 307 1 191 341 99 0 chr6 48244409 48244500 -141035054 - L2 LINE L2 -27 3245 3146 2121 116 0 0 chr6 48245353 48245753 -141033801 - AluSq SINE Alu 0 400 1 1892 128 0 56 chr6 48246224 48246543 -141033011 + AluJb SINE Alu 1 301 -11 27 49 0 0 chr6 48246694 48246735 -141032819 + AT_rich Low_complexity Low_complexity 1 41 0 309 325 48 0 chr6 48248679 48248805 -141030749 - MIR3 SINE MIR -2 206 75 960 277 71 55 chr6 48250456 48250819 -141028735 + L1ME4a LINE L1 5345 5722 -399 1658 174 49 7 chr6 48250819 48251106 -141028448 + AluJo SINE Alu 2 300 -12 960 277 71 55 chr6 48251106 48251302 -141028252 + L1ME4a LINE L1 5722 5913 -208 1403 130 23 76 chr6 48252359 48252621 -141026933 + AluJo SINE Alu 33 280 -32 437 312 24 26 chr6 48252908 48253115 -141026439 + MIR SINE MIR 56 261 -1 2320 103 0 0 chr6 48253133 48253435 -141026119 - AluY SINE Alu -9 302 1 211 382 73 0 chr6 48253461 48253571 -141025983 - L2 LINE L2 -4 3268 3151 29 21 0 21 chr6 48253734 48253758 -141025796 + AT_rich Low_complexity Low_complexity 1 25 -21 2247 94 0 0 chr6 48253758 48254044 -141025510 + AluSx SINE Alu 1 286 -26 29 21 0 21 chr6 48254044 48254066 -141025488 + AT_rich Low_complexity Low_complexity 25 46 0 1064 226 40 4 chr6 48254066 48254314 -141025240 - L1ME3 LINE L1 0 6162 5906 1712 167 29 0 chr6 48254553 48254834 -141024720 + AluJo SINE Alu 7 295 -17 1359 171 22 87 chr6 48254841 48255162 -141024392 + AluJo SINE Alu 1 300 -12 1946 67 28 35 chr6 48255965 48256247 -141023307 - L1PA6 LINE L1 -2 6152 5873 5176 123 9 14 chr6 48256605 48257403 -141022151 - L1MB7 LINE L1 -19 6165 5372 1041 207 32 0 chr6 48257411 48257561 -141021993 - AluJo SINE Alu -34 278 119 246 32 0 0 chr6 48257561 48257592 -141021962 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1041 207 32 0 chr6 48257592 48257629 -141021925 - AluJo SINE Alu -193 119 85 601 260 115 29 chr6 48257719 48258096 -141021458 - MLT1J2 LTR MaLR 0 450 64 1871 121 69 79 chr6 48258497 48258876 -141020678 + THE1C LTR MaLR 1 375 0 2110 103 0 24 chr6 48258900 48259219 -141020335 - AluSx SINE Alu 0 312 1 2103 120 31 3 chr6 48260135 48260426 -141019128 - AluSx SINE Alu -13 299 1 2277 111 0 0 chr6 48260481 48260779 -141018775 + AluSx SINE Alu 3 300 -12 2138 105 0 36 chr6 48260948 48261253 -141018301 - AluSg SINE Alu -16 294 1 309 300 88 12 chr6 48261264 48261434 -141018120 - HAL1b LINE L1 -420 928 746 1598 164 3 41 chr6 48262500 48262793 -141016761 + AluJo SINE Alu 23 304 -8 878 228 87 0 chr6 48262879 48263120 -141016434 - HAL1 LINE L1 -888 1619 1358 583 277 112 52 chr6 48266270 48266964 -141012590 + L2 LINE L2 2574 3309 -4 530 246 132 12 chr6 48269491 48269658 -141009896 - MIR3 SINE MIR -2 206 20 217 300 0 0 chr6 48271609 48271669 -141007885 - L2 LINE L2 -3 3269 3210 2382 81 0 29 chr6 48272583 48272893 -141006661 - AluSc SINE Alu -8 301 1 3282 117 26 36 chr6 48273023 48273271 -141006283 + MER4B LTR ERV1 32 281 -498 2550 50 0 3 chr6 48273271 48273573 -141005981 + AluY SINE Alu 1 301 -10 3282 117 26 36 chr6 48273573 48273885 -141005669 + MER4B LTR ERV1 281 753 -26 1149 188 133 33 chr6 48273917 48274188 -141005366 - AluJo SINE Alu -14 298 1 616 151 118 0 chr6 48276125 48276244 -141003310 + Charlie4 DNA MER1_type 1816 1948 -13 220 305 0 0 chr6 48276799 48276858 -141002696 - L2 LINE L2 -1 3312 3254 433 307 0 0 chr6 48277254 48277368 -141002186 + MIR SINE MIR 30 143 -65 334 272 54 11 chr6 48278672 48278764 -141000790 + L2 LINE L2 3162 3257 -15 987 152 0 0 chr6 48279246 48279378 -141000176 + FLAM_A SINE Alu 1 132 -1 31 0 0 0 chr6 48279397 48279428 -141000126 + AT_rich Low_complexity Low_complexity 1 31 0 2136 67 0 0 chr6 48279519 48279774 -140999780 + AluY SINE Alu 46 300 -11 926 296 122 34 chr6 48280983 48281522 -140998032 - L2 LINE L2 -7 3306 2680 2323 104 3 3 chr6 48281522 48281831 -140997723 - AluSp SINE Alu -4 309 1 926 296 122 34 chr6 48281831 48282067 -140997487 - L2 LINE L2 -633 2680 2466 * 1570 274 153 23 chr6 48282054 48282699 -140996855 + L3 LINE CR1 586 1314 -263 2204 102 10 3 chr6 48282834 48283127 -140996427 - AluSg SINE Alu -15 295 1 2404 97 0 0 chr6 48283142 48283450 -140996104 - AluSc SINE Alu -1 308 1 2063 121 68 82 chr6 48283460 48283673 -140995881 - L1MC1 LINE L1 -13 6320 6114 1665 141 58 24 chr6 48283673 48283964 -140995590 - AluJo SINE Alu -11 301 1 2063 121 68 82 chr6 48283964 48284163 -140995391 - L1MC1 LINE L1 -219 6114 5914 204 135 0 0 chr6 48285264 48285301 -140994253 + (TG)n Simple_repeat Simple_repeat 2 38 0 393 308 71 16 chr6 48286371 48286553 -140993001 + L2 LINE L2 3119 3310 -3 1900 172 0 0 chr6 48287816 48288113 -140991441 - AluSx SINE Alu -15 297 1 1676 178 7 14 chr6 48288407 48288699 -140990855 + AluJo SINE Alu 1 290 -22 2303 109 3 3 chr6 48288837 48289148 -140990406 + AluSq SINE Alu 1 311 -2 2531 57 10 0 chr6 48289485 48289786 -140989768 + AluY SINE Alu 1 304 -7 2311 107 3 0 chr6 48290024 48290333 -140989221 - AluSg SINE Alu 0 310 1 2183 114 3 31 chr6 48292602 48292919 -140986635 + AluSc SINE Alu 1 308 -1 287 194 113 0 chr6 48293715 48293777 -140985777 + MER58 DNA MER1_type 26 94 -121 396 114 143 14 chr6 48293784 48293854 -140985700 + MER58 DNA MER1_type 2342 2420 0 270 284 12 12 chr6 48294223 48294304 -140985250 - MIR SINE MIR -67 141 61 210 71 0 0 chr6 48294331 48294359 -140985195 + (A)n Simple_repeat Simple_repeat 1 28 0 2306 88 0 41 chr6 48294698 48295017 -140984537 - AluSc SINE Alu -3 306 1 804 179 81 12 chr6 48295022 48295195 -140984359 + MER5A DNA MER1_type 1 185 -4 2313 74 0 48 chr6 48298009 48298344 -140981210 - AluY SINE Alu 0 320 1 21 0 0 0 chr6 48298347 48298368 -140981186 + AT_rich Low_complexity Low_complexity 1 21 0 1952 153 0 3 chr6 48300290 48300577 -140978977 - AluSx SINE Alu -20 292 7 2639 53 0 0 chr6 48300592 48300896 -140978658 - AluY SINE Alu -7 304 1 414 39 0 0 chr6 48301466 48301518 -140978036 + (CA)n Simple_repeat Simple_repeat 2 53 0 663 196 43 31 chr6 48302369 48302532 -140977022 - MER5B DNA MER1_type -13 165 1 505 258 101 10 chr6 48302881 48303079 -140976475 - Charlie8 DNA MER1_type -2201 216 1 244 152 22 0 chr6 48303207 48303253 -140976301 + L2 LINE L2 3266 3312 -1 318 290 46 38 chr6 48304062 48304193 -140975361 - HAL1 LINE L1 -8 2499 2368 23 92 0 0 chr6 48304198 48304263 -140975291 + AT_rich Low_complexity Low_complexity 1 65 0 1903 168 7 7 chr6 48304401 48304704 -140974850 - AluJb SINE Alu -9 303 1 688 271 136 26 chr6 48304847 48305157 -140974397 - L1MC/D LINE L1 -1998 5810 5467 2883 239 54 88 chr6 48305157 48305503 -140974051 - HAL1 LINE L1 -116 2391 2035 2122 88 3 88 chr6 48305503 48305822 -140973732 + AluSg1 SINE Alu 1 292 -17 2883 239 54 88 chr6 48305822 48306136 -140973418 - HAL1 LINE L1 -472 2035 1712 1748 130 16 0 chr6 48306136 48306383 -140973171 - AluSx SINE Alu -2 310 60 2883 239 54 88 chr6 48306383 48307305 -140972249 - HAL1 LINE L1 -795 1712 863 3456 148 54 16 chr6 48307311 48307991 -140971563 - L1MB8 LINE L1 -1 6177 5472 8177 186 50 45 chr6 48307991 48309663 -140969891 - L1MA4A LINE L1 -2 7005 5343 2257 112 13 7 chr6 48309663 48309967 -140969587 + AluSc SINE Alu 1 306 -3 8177 186 50 45 chr6 48309967 48310993 -140968561 - L1MA4A LINE L1 -1664 5343 4291 958 182 51 6 chr6 48310993 48311169 -140968385 - FRAM SINE Alu 0 176 1 8177 186 50 45 chr6 48311169 48311831 -140967723 - L1MA4A LINE L1 -2716 4291 3634 323 273 10 40 chr6 48311832 48311931 -140967623 - L1MA4A LINE L1 -6079 770 675 240 241 103 11 chr6 48312179 48312266 -140967288 - HAL1 LINE L1 -1679 828 734 732 313 125 8 chr6 48312277 48312638 -140966916 + L2 LINE L2 2909 3311 -2 1060 319 27 19 chr6 48312665 48313145 -140966409 - HAL1 LINE L1 -1800 707 224 21 0 0 0 chr6 48313220 48313241 -140966313 + AT_rich Low_complexity Low_complexity 1 21 0 326 299 156 0 chr6 48314352 48314506 -140965048 - MIR SINE MIR 0 262 85 359 295 20 31 chr6 48314702 48314863 -140964691 + MIR SINE MIR 38 195 -63 741 276 11 23 chr6 48315640 48315904 -140963650 - MIR SINE MIR 0 262 2 403 286 59 76 chr6 48316094 48316332 -140963222 - HAL1b LINE L1 -22 1326 1093 236 224 52 0 chr6 48318867 48318925 -140960629 - MIR SINE MIR -78 184 124 1125 104 0 0 chr6 48318975 48319138 -140960416 - L1PA4 LINE L1 0 6155 5993 1142 259 65 9 chr6 48320083 48320441 -140959113 + MER45C DNA AcHobo 1 382 -571 691 215 123 68 chr6 48320452 48320671 -140958883 + MER45C DNA AcHobo 702 932 -21 2128 130 3 13 chr6 48321553 48321860 -140957694 - AluSx SINE Alu -8 304 1 1926 131 3 39 chr6 48321932 48322070 -140957484 + AluJo SINE Alu 1 142 -170 2220 147 0 0 chr6 48322070 48322382 -140957172 + AluSx SINE Alu 1 312 0 1926 131 3 39 chr6 48322382 48322549 -140957005 + AluJo SINE Alu 142 295 -17 1139 205 29 67 chr6 48323049 48323390 -140956164 - MLT1A2 LTR MaLR -46 328 1 327 303 50 0 chr6 48325351 48325450 -140954104 + L2 LINE L2 3166 3269 -3 446 239 68 0 chr6 48325706 48325823 -140953731 - MIR SINE MIR 0 262 138 631 316 109 30 chr6 48325823 48326267 -140953287 + L1ME3A LINE L1 5469 5949 -221 383 234 11 11 chr6 48326456 48326550 -140953004 - MIR SINE MIR -132 130 37 309 188 0 59 chr6 48327956 48328041 -140951513 + L1ME3A LINE L1 5863 5942 -228 349 241 83 9 chr6 48328050 48328158 -140951396 + L2 LINE L2 3138 3253 -19 412 303 34 39 chr6 48328522 48328700 -140950854 + MIR3 SINE MIR 3 179 -29 2542 50 10 3 chr6 48328767 48329065 -140950489 + AluY SINE Alu 1 300 -11 2073 119 3 3 chr6 48330020 48330339 -140949215 - AluSx SINE Alu 0 319 1 2299 90 0 0 chr6 48332893 48333199 -140946355 + AluSc SINE Alu 1 306 0 242 248 157 36 chr6 48333271 48333577 -140945977 + L2 LINE L2 2833 3175 -97 868 175 12 0 chr6 48336246 48336406 -140943148 - MER6 DNA MER2_type -583 282 121 198 0 0 0 chr6 48336465 48336487 -140943067 + (CCA)n Simple_repeat Simple_repeat 1 22 0 270 0 0 0 chr6 48340133 48340163 -140939391 + (TTA)n Simple_repeat Simple_repeat 2 31 0 * 324 0 0 0 chr6 48340161 48340197 -140939357 + (T)n Simple_repeat Simple_repeat 1 36 0 441 0 0 0 chr6 48340439 48340488 -140939066 + (CA)n Simple_repeat Simple_repeat 1 49 0 24 0 0 0 chr6 48341327 48341351 -140938203 + AT_rich Low_complexity Low_complexity 1 24 0 189 206 29 73 chr6 48344892 48344960 -140934594 - L2 LINE L2 -220 3052 2988 237 343 58 0 chr6 48345071 48345208 -140934346 - L2 LINE L2 -510 2804 2660 2209 83 0 7 chr6 48346428 48346742 -140932812 + AluSc SINE Alu 1 309 0 238 322 56 21 chr6 48346877 48347020 -140932534 - MER5B DNA MER1_type -5 173 26 205 163 0 41 chr6 48347879 48347928 -140931626 + A-rich Low_complexity Low_complexity 2 48 0 273 232 101 0 chr6 48348134 48348203 -140931351 + MIR SINE MIR 117 192 -70 517 254 59 30 chr6 48349369 48349538 -140930016 - MER5B DNA MER1_type -2 176 3 250 303 59 0 chr6 48349765 48349884 -140929670 + L2 LINE L2 27 152 -3162 405 248 93 23 chr6 48350048 48350177 -140929377 - MLT1G1 LTR MaLR -28 567 430 1783 273 103 3 chr6 48350310 48350970 -140928584 - L1MB5 LINE L1 0 6174 5449 3013 229 114 46 chr6 48351378 48352509 -140927045 - MER69B DNA AcHobo -11 1215 8 767 250 250 27 chr6 48352606 48353167 -140926387 + L2 LINE L2 1563 2248 -1066 826 248 43 0 chr6 48353167 48353397 -140926157 + L1MB3 LINE L1 5683 5922 -261 608 221 0 0 chr6 48353399 48353526 -140926028 + L1MB3 LINE L1 6054 6180 -3 497 277 107 49 chr6 48353545 48353621 -140925933 + L2 LINE L2 2244 2314 -1000 306 0 0 0 chr6 48353621 48353655 -140925899 + (CA)n Simple_repeat Simple_repeat 1 34 0 497 277 107 49 chr6 48353655 48354007 -140925547 + L2 LINE L2 2314 2697 -617 311 290 0 0 chr6 48354161 48354230 -140925324 + L2 LINE L2 3187 3255 -17 308 67 67 0 chr6 48354950 48354995 -140924559 - L1MB3 LINE L1 -232 5951 5904 185 200 0 0 chr6 48355013 48355043 -140924511 + L2 LINE L2 3264 3293 -20 25 31 0 0 chr6 48355133 48355165 -140924389 + AT_rich Low_complexity Low_complexity 1 32 0 872 147 7 7 chr6 48355166 48355309 -140924245 - FRAM SINE Alu -26 150 8 24 0 0 0 chr6 48355323 48355347 -140924207 + AT_rich Low_complexity Low_complexity 1 24 0 774 139 41 8 chr6 48355388 48355510 -140924044 - AluJb SINE Alu -185 127 2 702 246 115 42 chr6 48355783 48356165 -140923389 - HAL1 LINE L1 -105 2402 1993 1657 146 11 22 chr6 48362614 48362888 -140916666 - AluJo SINE Alu -11 301 31 307 200 62 0 chr6 48362909 48362974 -140916580 + AluJ/FLAM SINE Alu 22 90 -212 193 209 0 23 chr6 48363417 48363460 -140916094 - L2 LINE L2 -2275 1039 998 4411 158 50 9 chr6 48363758 48365109 -140914445 + L1MA4A LINE L1 4826 6156 0 429 0 49 0 chr6 48367811 48367872 -140911682 + (TA)n Simple_repeat Simple_repeat 2 65 0 936 193 0 0 chr6 48371389 48371550 -140908004 + AluJb SINE Alu 136 296 -16 1271 308 122 12 chr6 48371660 48372228 -140907326 + L2 LINE L2 2066 2695 -619 214 279 13 38 chr6 48372230 48372309 -140907245 + L2 LINE L2 2571 2647 -667 271 339 139 32 chr6 48372506 48372786 -140906768 + L2 LINE L2 3004 3313 0 810 280 178 40 chr6 48372860 48373428 -140906126 + L2 LINE L2 1914 2559 -755 249 342 0 0 chr6 48373428 48373507 -140906047 - L2 LINE L2 -372 2942 2864 182 282 0 70 chr6 48373547 48373618 -140905936 + L2 LINE L2 2640 2705 -609 748 173 8 15 chr6 48373879 48374012 -140905542 - FLAM_C SINE Alu 0 133 2 608 277 130 31 chr6 48374015 48374523 -140905031 + L2 LINE L2 2686 3250 -63 193 221 118 44 chr6 48375769 48375837 -140903717 - L2 LINE L2 -34 3279 3207 2526 84 0 0 chr6 48376272 48376581 -140902973 - AluSx SINE Alu -3 309 1 202 300 10 70 chr6 48377500 48377600 -140901954 - L2 LINE L2 -10 3303 3210 180 167 0 48 chr6 48378166 48378208 -140901346 + MIR SINE MIR 33 72 -136 2620 41 0 3 chr6 48378281 48378576 -140900978 - AluY SINE Alu -17 294 1 320 281 88 94 chr6 48379118 48379438 -140900116 + L3 LINE CR1 1252 1569 -8 1761 172 17 0 chr6 48379524 48379814 -140899740 - AluJo SINE Alu -17 295 1 9386 163 33 14 chr6 48380706 48383705 -140895849 + L1PB1 LINE L1 3100 6149 -2 358 297 20 88 chr6 48384262 48384410 -140895144 + MIR3 SINE MIR 69 206 -2 1354 177 203 25 chr6 48384811 48385285 -140894269 + L1ME1 LINE L1 4002 4559 -1587 3140 196 64 24 chr6 48385302 48386067 -140893487 + L1ME1 LINE L1 5315 6110 -56 259 89 71 18 chr6 48386173 48386229 -140893325 + L1MB7 LINE L1 6126 6184 0 4114 120 123 31 chr6 48387160 48388080 -140891474 + pTR5 LTR ERV1 742 2032 -406 309 250 11 0 chr6 48388080 48388172 -140891382 + LTR30 LTR ERV1 551 643 -79 1449 99 47 9 chr6 48388174 48388406 -140891148 + pTR5 LTR ERV1 172 412 -2026 2011 240 45 88 chr6 48389380 48389584 -140889970 + L1MC4 LINE L1 6817 7028 -1014 1711 167 71 9 chr6 48389584 48389908 -140889646 - MER2 DNA MER2_type 0 344 1 2011 240 45 88 chr6 48389908 48390531 -140889023 + L1MC4 LINE L1 7028 7608 -434 490 139 12 12 chr6 48390543 48390629 -140888925 + MER5A DNA MER1_type 93 178 -11 1498 171 18 87 chr6 48390638 48390972 -140888582 - AluJo SINE Alu -1 311 1 2191 95 36 13 chr6 48391418 48391723 -140887831 + AluSx SINE Alu 1 312 0 189 361 25 49 chr6 48394329 48394451 -140885103 + L3 LINE CR1 148 266 -1311 460 106 0 0 chr6 48394700 48394766 -140884788 + AluJ/FLAM SINE Alu 11 76 -236 189 0 0 0 chr6 48394766 48394787 -140884767 + (A)n Simple_repeat Simple_repeat 1 21 0 1203 245 172 17 chr6 48396419 48396861 -140882693 + L2 LINE L2 2521 3019 -294 316 237 258 59 chr6 48396935 48397222 -140882332 + L2 LINE L2 2970 3313 0 2226 115 32 12 chr6 48400048 48400180 -140879374 + MER2 DNA MER2_type 1 129 -216 2345 177 28 32 chr6 48400180 48400616 -140878938 - Tigger2a DNA MER2_type 0 434 1 2226 115 32 12 chr6 48400616 48400821 -140878733 + MER2 DNA MER2_type 129 345 0 2232 99 10 16 chr6 48402420 48402723 -140876831 + AluSc SINE Alu 1 301 -8 536 245 26 39 chr6 48402759 48402914 -140876640 - L1M4 LINE L1 -1948 4198 4046 546 278 131 30 chr6 48402946 48403056 -140876498 - L1MC4 LINE L1 -7 8035 7938 2069 207 47 83 chr6 48403056 48403631 -140875923 + MLT2B3 LTR ERVL 1 554 0 546 278 131 30 chr6 48403631 48403916 -140875638 - L1MC4 LINE L1 -104 7938 7600 1868 124 0 4 chr6 48404093 48404351 -140875203 - AluJb SINE Alu -54 258 2 180 306 157 66 chr6 48405065 48405186 -140874368 - L2 LINE L2 -2 3270 3139 237 108 0 0 chr6 48405187 48405224 -140874330 + (CA)n Simple_repeat Simple_repeat 2 38 0 2164 114 10 3 chr6 48405452 48405750 -140873804 + AluSp SINE Alu 1 300 -13 1853 155 25 59 chr6 48406101 48406455 -140873099 - L1MD1 LINE L1 0 6242 5901 937 150 13 13 chr6 48406487 48406640 -140872914 - FRAM SINE Alu -22 154 2 768 218 144 13 chr6 48406729 48406958 -140872596 - MIR SINE MIR -3 259 1 249 159 0 0 chr6 48408343 48408387 -140871167 + (TATG)n Simple_repeat Simple_repeat 2 45 0 239 217 0 17 chr6 48408396 48408456 -140871098 + L1MCa LINE L1 2006 2064 -4362 234 222 0 0 chr6 48408463 48408517 -140871037 + (TG)n Simple_repeat Simple_repeat 2 55 0 235 106 0 21 chr6 48408517 48408564 -140870990 - LTR66 LTR ERVL -171 439 394 929 174 130 5 chr6 48408593 48408777 -140870777 - MER6B DNA MER2_type -3 207 1 2398 87 0 0 chr6 48408845 48409145 -140870409 + AluSx SINE Alu 1 300 -12 399 158 10 20 chr6 48409729 48409830 -140869724 + GA-rich Low_complexity Low_complexity 2 101 0 2060 85 4 0 chr6 48410103 48410363 -140869191 - AluSx SINE Alu -4 308 48 901 199 36 91 chr6 48410862 48411169 -140868385 + L1MC4 LINE L1 7753 8042 0 2319 94 0 23 chr6 48411540 48411849 -140867705 + AluSc SINE Alu 1 302 -7 235 0 0 54 chr6 48412977 48413014 -140866540 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 314 173 0 0 chr6 48413030 48413082 -140866472 + MER6B DNA MER2_type 158 209 -1 2253 94 0 7 chr6 48413100 48413397 -140866157 + AluY SINE Alu 1 295 -16 1620 125 0 13 chr6 48413452 48413684 -140865870 + AluSx SINE Alu 1 229 -83 834 200 7 7 chr6 48413691 48413826 -140865728 + AluJb SINE Alu 153 287 -25 222 333 49 0 chr6 48414181 48414262 -140865292 - MIR SINE MIR -13 249 165 1647 142 20 48 chr6 48414515 48414810 -140864744 + AluJo SINE Alu 1 287 -25 644 262 114 90 chr6 48414844 48415431 -140864123 + HAL1 LINE L1 816 1387 -1120 2182 104 0 0 chr6 48415431 48415711 -140863843 + AluSg SINE Alu 1 280 -30 644 262 114 90 chr6 48415711 48415858 -140863696 + HAL1 LINE L1 1387 1575 -932 1854 156 0 10 chr6 48415858 48416153 -140863401 - AluJb SINE Alu -20 292 1 644 262 114 90 chr6 48416153 48416242 -140863312 + HAL1 LINE L1 1575 1660 -847 250 297 88 11 chr6 48416308 48416399 -140863155 + HAL1 LINE L1 1812 1909 -598 1375 118 86 14 chr6 48416890 48417110 -140862444 + MER46A DNA MER2_type 1 236 0 18390 147 8 2 chr6 48417540 48420296 -140859258 - HERVL18 LTR ERVL -2654 3393 623 23972 140 27 23 chr6 48420411 48420461 -140859093 - L1 LINE L1 -2390 5175 5127 1657 60 0 0 chr6 48420461 48420693 -140858861 - AluY SINE Alu 0 315 84 23972 140 27 23 chr6 48420693 48421136 -140858418 - L1 LINE L1 -2438 5127 4687 2404 72 3 0 chr6 48421136 48421429 -140858125 - AluY SINE Alu -17 294 1 23972 140 27 23 chr6 48421429 48423280 -140856274 - L1 LINE L1 -2878 4687 2843 2113 122 7 3 chr6 48423280 48423575 -140855979 - AluSg SINE Alu -14 296 1 23972 140 27 23 chr6 48423575 48424216 -140855338 - L1 LINE L1 -4722 2843 2206 1961 81 154 0 chr6 48424216 48424476 -140855078 - AluSx SINE Alu -2 300 1 23972 140 27 23 chr6 48424476 48426641 -140852913 - L1 LINE L1 -5359 2206 12 195 271 157 0 chr6 48426869 48426939 -140852615 + MIR SINE MIR 73 153 -109 203 122 61 41 chr6 48427574 48427623 -140851931 + GA-rich Low_complexity Low_complexity 1 50 0 189 0 0 0 chr6 48428104 48428125 -140851429 + (CA)n Simple_repeat Simple_repeat 2 22 0 1546 163 33 18 chr6 48430100 48430376 -140849178 + AluJo SINE Alu 3 282 -30 386 295 78 33 chr6 48430456 48430700 -140848854 + L1MC/D LINE L1 3596 3850 -2296 314 276 166 31 chr6 48430732 48430895 -140848659 - L2 LINE L2 -576 2738 2554 469 327 58 16 chr6 48430957 48431214 -140848340 + L1MC/D LINE L1 5506 5773 -2035 400 267 48 0 chr6 48431216 48431321 -140848233 + MIR SINE MIR 140 249 -13 2388 71 0 0 chr6 48431685 48432002 -140847552 + AluY SINE Alu 1 317 0 251 327 148 40 chr6 48432031 48432132 -140847422 - MIR SINE MIR -64 144 33 719 302 114 60 chr6 48432143 48432895 -140846659 - L2 LINE L2 -6 3307 2514 617 225 22 0 chr6 48433836 48433974 -140845580 - L1MA10 LINE L1 -3 6331 6191 302 291 88 27 chr6 48433974 48434114 -140845440 - L1ME1 LINE L1 -146 6020 5869 717 267 91 63 chr6 48434341 48434511 -140845043 - L1ME4a LINE L1 -2 6119 5955 1815 146 115 44 chr6 48434511 48434846 -140844708 + MLT1B LTR MaLR 1 365 -25 432 0 0 0 chr6 48434846 48434894 -140844660 + (TG)n Simple_repeat Simple_repeat 2 49 0 1815 146 115 44 chr6 48434894 48434922 -140844632 + MLT1B LTR MaLR 365 390 0 717 267 91 63 chr6 48434922 48434947 -140844607 - L1ME4a LINE L1 -166 5955 5932 2369 90 0 0 chr6 48434947 48435248 -140844306 + AluY SINE Alu 1 301 -10 405 0 0 0 chr6 48435250 48435295 -140844259 + (TG)n Simple_repeat Simple_repeat 2 46 0 717 267 91 63 chr6 48435295 48435596 -140843958 - L1ME4a LINE L1 -189 5932 5600 2127 133 0 0 chr6 48435596 48435904 -140843650 - AluSx SINE Alu -4 308 1 717 267 91 63 chr6 48435904 48435953 -140843601 - L1ME4a LINE L1 -521 5600 5554 2002 134 10 3 chr6 48435954 48436246 -140843308 + AluSq SINE Alu 1 294 -19 2228 123 7 0 chr6 48436324 48436634 -140842920 - AluSx SINE Alu 0 312 1 890 156 0 8 chr6 48436687 48436815 -140842739 + FLAM_A SINE Alu 1 127 -6 21 0 0 0 chr6 48436844 48436865 -140842689 + AT_rich Low_complexity Low_complexity 1 21 0 453 349 30 47 chr6 48437052 48437456 -140842098 + L1M4 LINE L1 4878 5274 -872 1991 140 7 0 chr6 48437479 48437772 -140841782 + AluSx SINE Alu 1 295 -17 1811 153 20 7 chr6 48437858 48438159 -140841395 + AluJo SINE Alu 1 305 -7 22 0 0 0 chr6 48438865 48438887 -140840667 + AT_rich Low_complexity Low_complexity 1 22 0 356 220 43 78 chr6 48438978 48439119 -140840435 - L1M4 LINE L1 -1527 4619 4484 1514 152 3 108 chr6 48439370 48439705 -140839849 + MER45B DNA AcHobo 407 706 -334 2185 146 128 13 chr6 48439706 48440090 -140839464 + MSTA LTR MaLR 1 428 0 2665 167 9 2 chr6 48440104 48440560 -140838994 + MSTA-int LTR MaLR 14 472 -1179 2087 102 7 31 chr6 48440561 48440855 -140838699 + AluSx SINE Alu 1 287 -25 545 114 9 0 chr6 48440857 48440962 -140838592 + (CATAA)n Simple_repeat Simple_repeat 2 107 0 1744 155 41 26 chr6 48441174 48441516 -140838038 + THE1C LTR MaLR 1 347 -28 2095 148 0 0 chr6 48441536 48441834 -140837720 - AluSx SINE Alu -14 298 1 1273 105 0 6 chr6 48441843 48442014 -140837540 - AluSc SINE Alu -8 301 132 2175 116 0 7 chr6 48442014 48442317 -140837237 - AluSx SINE Alu -11 301 1 271 150 0 0 chr6 48442319 48442359 -140837195 + THE1C LTR MaLR 389 428 0 214 328 90 113 chr6 48442507 48442584 -140836970 + L2 LINE L2 2929 3006 -266 2757 90 13 19 chr6 48442584 48442960 -140836594 - THE1C LTR MaLR 0 375 2 214 328 90 113 chr6 48442960 48443227 -140836327 + L2 LINE L2 3006 3265 -7 327 260 160 50 chr6 48444025 48444225 -140835329 + LTR33A LTR ERVL 1 162 -361 1524 196 22 20 chr6 48444379 48444719 -140834835 - Tigger7 DNA MER2_type 0 2491 1 3436 236 71 77 chr6 48445109 48445646 -140833908 + L1MC5 LINE L1 5351 5890 -2071 512 221 107 25 chr6 48445646 48445768 -140833786 + FLAM_A SINE Alu 2 133 0 3436 236 71 77 chr6 48445768 48447782 -140831772 + L1MC5 LINE L1 5890 7893 -68 21 0 0 0 chr6 48448363 48448384 -140831170 + AT_rich Low_complexity Low_complexity 1 21 0 2307 109 0 0 chr6 48448535 48448839 -140830715 + AluSx SINE Alu 1 304 -8 28 29 0 0 chr6 48449971 48450006 -140829548 + AT_rich Low_complexity Low_complexity 1 35 0 2112 123 17 0 chr6 48454001 48454302 -140825252 + AluSx SINE Alu 1 306 -6 1710 150 79 0 chr6 48455202 48455469 -140824085 - AluJo SINE Alu -24 288 1 244 293 98 0 chr6 48455479 48455585 -140823969 + MIR SINE MIR 111 228 -34 1736 140 89 19 chr6 48455688 48456002 -140823552 + MER44D DNA MER2_type 4 609 0 2258 69 38 0 chr6 48457789 48458079 -140821475 - AluY SINE Alu -10 301 1 25 83 0 0 chr6 48458194 48458254 -140821300 + AT_rich Low_complexity Low_complexity 1 60 0 1983 176 0 0 chr6 48458376 48458677 -140820877 + AluJb SINE Alu 1 301 -11 195 369 27 45 chr6 48458809 48458920 -140820634 + MIR SINE MIR 30 138 -70 577 235 50 22 chr6 48459118 48459297 -140820257 - L2 LINE L2 -4 3309 3126 281 284 24 24 chr6 48459628 48459755 -140819799 + GA-rich Low_complexity Low_complexity 2 128 0 330 67 0 0 chr6 48461174 48461219 -140818335 + (GA)n Simple_repeat Simple_repeat 1 45 0 3396 244 97 70 chr6 48462003 48463763 -140815791 - HAL1 LINE L1 -669 1838 32 204 40 0 0 chr6 48464297 48464322 -140815232 + (TC)n Simple_repeat Simple_repeat 2 26 0 2790 3 0 0 chr6 48465051 48465352 -140814202 - AluYb8 SINE Alu -17 301 1 582 223 9 0 chr6 48465399 48465511 -140814043 - MER81 DNA DNA -1 113 1 492 196 176 14 chr6 48466439 48466587 -140812967 + MIR SINE MIR 79 250 -12 200 200 111 0 chr6 48466587 48466632 -140812922 + L2 LINE L2 3264 3313 0 187 301 48 48 chr6 48466636 48466719 -140812835 - L2 LINE L2 -4 3268 3186 279 305 71 59 chr6 48466814 48467053 -140812501 - L2 LINE L2 -185 3087 2846 362 306 71 0 chr6 48467351 48467449 -140812105 - MER5B DNA MER1_type 0 178 74 1674 164 20 24 chr6 48467543 48467836 -140811718 + AluJo SINE Alu 1 292 -20 2240 112 3 28 chr6 48467840 48468161 -140811393 + AluSp SINE Alu 1 313 0 305 357 60 71 chr6 48468366 48468716 -140810838 + L2 LINE L2 2927 3272 0 212 0 36 0 chr6 48469358 48469386 -140810168 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 797 182 14 7 chr6 48469388 48469536 -140810018 - FRAM SINE Alu -30 146 1 1459 150 29 82 chr6 48469562 48469868 -140809686 + AluJo SINE Alu 1 290 -22 23 0 0 0 chr6 48471365 48471388 -140808166 + AT_rich Low_complexity Low_complexity 1 23 0 856 249 28 19 chr6 48471400 48471613 -140807941 - MIR SINE MIR 0 262 48 1626 177 0 54 chr6 48471741 48472057 -140807497 + AluJo SINE Alu 1 299 -13 288 0 0 0 chr6 48474081 48474113 -140805441 + (A)n Simple_repeat Simple_repeat 1 32 0 707 180 72 20 chr6 48474371 48474593 -140804961 - MER106B DNA MER1_type 0 1059 1 2091 123 0 0 chr6 48474637 48474914 -140804640 - AluSg SINE Alu -33 277 1 670 304 143 25 chr6 48475075 48475601 -140803953 + L2 LINE L2 2164 2751 -563 237 103 0 0 chr6 48475862 48475901 -140803653 - MER101 LTR ERV1 -1 473 435 1788 152 14 4 chr6 48479824 48480101 -140799453 - AluJb SINE Alu -24 288 9 2128 126 7 0 chr6 48480270 48480564 -140798990 + AluSx SINE Alu 1 296 -16 387 60 0 0 chr6 48480565 48480615 -140798939 + (TA)n Simple_repeat Simple_repeat 1 50 0 258 211 0 0 chr6 48480780 48480832 -140798722 - AluJ/monomer SINE Alu -249 54 3 707 33 0 11 chr6 48482160 48482251 -140797303 + (GAAA)n Simple_repeat Simple_repeat 2 91 0 202 289 0 0 chr6 48483843 48483895 -140795659 + (CA)n Simple_repeat Simple_repeat 2 53 0 282 54 0 0 chr6 48484225 48484262 -140795292 - MER61C LTR ERV1 0 434 398 * 368 118 26 40 chr6 48484241 48484317 -140795237 + MER61C LTR ERV1 314 388 -46 232 57 0 0 chr6 48484346 48484381 -140795173 - MER61B LTR ERV1 -243 182 148 263 67 0 44 chr6 48484387 48484432 -140795122 - MER61C LTR ERV1 -391 43 1 2084 126 31 0 chr6 48484522 48484816 -140794738 - AluSx SINE Alu -9 303 1 2342 114 0 0 chr6 48484873 48485179 -140794375 + AluSx SINE Alu 1 306 -6 343 118 0 0 chr6 48485254 48485305 -140794249 + MER94 DNA DNA 1 51 -83 324 276 43 68 chr6 48485361 48485524 -140794030 + L1MEd LINE L1 722 880 -5754 1099 256 159 48 chr6 48485688 48486430 -140793124 + HAL1 LINE L1 1684 2507 0 266 281 41 29 chr6 48486503 48486674 -140792880 + L1MEd LINE L1 2067 2239 -4586 1683 174 0 48 chr6 48486829 48487145 -140792409 + AluJo SINE Alu 1 301 -11 1037 253 75 68 chr6 48487430 48488253 -140791301 + L1MEd LINE L1 2647 3475 -3169 601 318 83 35 chr6 48488249 48488648 -140790906 + L1MEd LINE L1 1 418 -6124 * 645 124 48 0 chr6 48488723 48488828 -140790726 + AluJb SINE Alu 203 312 0 1554 281 84 18 chr6 48488840 48489777 -140789777 + L1MEd LINE L1 3616 4614 -2030 356 278 39 19 chr6 48489772 48489977 -140789577 + L1MEd LINE L1 4819 5027 -1617 * 337 160 80 90 chr6 48490075 48490175 -140789379 + MLT1A2 LTR MaLR 1 99 -275 2244 108 7 0 chr6 48491475 48491771 -140787783 - AluSx SINE Alu -14 298 1 2162 112 14 10 chr6 48492076 48492371 -140787183 - AluSx SINE Alu -12 300 5 1676 186 3 26 chr6 48492912 48493224 -140786330 - AluJb SINE Alu -7 305 1 2323 86 0 0 chr6 48493536 48493826 -140785728 + AluSq SINE Alu 1 290 -23 22 0 0 0 chr6 48493843 48493865 -140785689 + AT_rich Low_complexity Low_complexity 1 22 0 1443 121 0 0 chr6 48496476 48496666 -140782888 - AluSq SINE Alu -123 190 1 497 319 47 34 chr6 48498774 48499009 -140780545 - MIR SINE MIR -5 257 20 23 0 0 0 chr6 48499114 48499137 -140780417 + AT_rich Low_complexity Low_complexity 1 23 0 2175 107 0 60 chr6 48499157 48499475 -140780079 - AluSx SINE Alu -13 299 1 310 325 44 9 chr6 48500176 48500290 -140779264 - L2 LINE L2 -17 3296 3179 205 161 0 0 chr6 48500300 48500331 -140779223 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 592 327 36 36 chr6 48500341 48500589 -140778965 - L2 LINE L2 0 3272 3025 209 348 18 92 chr6 48500602 48500766 -140778788 - L2 LINE L2 -210 3062 2911 1249 270 61 23 chr6 48500806 48501199 -140778355 + MLT1F LTR MaLR 2 409 -133 861 96 26 32 chr6 48501274 48501430 -140778124 + MLT1A1 LTR MaLR 5 159 -206 1355 197 12 36 chr6 48501430 48501679 -140777875 + AluJb SINE Alu 1 243 -69 1092 166 11 13 chr6 48501697 48501988 -140777566 + MLT1A1 LTR MaLR 144 485 -57 2373 89 0 3 chr6 48501988 48502290 -140777264 - AluSg SINE Alu -9 301 1 1092 166 11 13 chr6 48502290 48502348 -140777206 + MLT1A1 LTR MaLR 485 542 0 244 335 53 53 chr6 48502363 48502590 -140776964 - L2 LINE L2 -460 2854 2628 1102 170 77 55 chr6 48502945 48503173 -140776381 + MER33 DNA MER1_type 7 245 -2340 2260 121 0 0 chr6 48503173 48503478 -140776076 - AluSx SINE Alu -2 310 6 1102 170 77 55 chr6 48503478 48503560 -140775994 + MER33 DNA MER1_type 245 324 0 211 340 169 30 chr6 48503621 48503994 -140775560 - L2 LINE L2 -742 2572 2148 330 348 52 32 chr6 48504147 48504397 -140775157 - L2 LINE L2 -343 2971 2717 28 29 0 0 chr6 48505081 48505116 -140774438 + AT_rich Low_complexity Low_complexity 1 35 0 600 228 6 48 chr6 48505847 48506014 -140773540 + MLT1J LTR MaLR 1 160 -351 2284 95 0 43 chr6 48506016 48506343 -140773211 - AluSp SINE Alu 0 313 1 274 351 119 35 chr6 48506375 48506922 -140772632 + L2 LINE L2 1518 2110 -1204 24 32 0 0 chr6 48507069 48507100 -140772454 + AT_rich Low_complexity Low_complexity 1 31 0 1962 108 62 49 chr6 48507355 48507725 -140771829 + THE1C LTR MaLR 1 375 0 524 248 243 29 chr6 48507974 48508184 -140771370 + MIR SINE MIR 4 258 -4 3280 180 56 10 chr6 48508291 48509073 -140770481 + L1MB7 LINE L1 4299 5116 -1030 1445 177 33 19 chr6 48509077 48509348 -140770206 + AluJo SINE Alu 11 285 -27 293 241 0 11 chr6 48509351 48509438 -140770116 + GA-rich Low_complexity Low_complexity 5 90 0 653 162 72 72 chr6 48509442 48509664 -140769890 + L1MB7 LINE L1 5107 5328 -818 4283 160 32 12 chr6 48509665 48510520 -140769034 + L1MB7 LINE L1 5294 6165 -19 925 178 0 0 chr6 48513031 48513183 -140766371 - FAM SINE Alu -33 152 1 185 321 57 47 chr6 48513198 48513304 -140766250 - MIR SINE MIR -144 118 12 1818 148 22 4 chr6 48514356 48514663 -140764891 + AluJo SINE Alu 1 312 0 2039 135 0 0 chr6 48515249 48515545 -140764009 + AluSx SINE Alu 1 296 -16 2094 130 0 0 chr6 48515824 48516142 -140763412 + AluY SINE Alu 1 318 0 1837 160 10 16 chr6 48516472 48516784 -140762770 + AluJb SINE Alu 3 312 0 989 126 0 0 chr6 48517027 48517154 -140762400 + FLAM_C SINE Alu 1 127 -16 250 321 38 38 chr6 48517180 48517339 -140762215 + L2 LINE L2 2198 2356 -958 360 294 122 32 chr6 48517387 48517788 -140761766 + L1MC/D LINE L1 4516 4952 -1194 21 36 0 0 chr6 48517895 48517923 -140761631 + AT_rich Low_complexity Low_complexity 1 28 0 1461 203 41 4 chr6 48517936 48518207 -140761347 + AluSx SINE Alu 2 282 -30 228 160 0 0 chr6 48518220 48518270 -140761284 - L1MC4 LINE L1 -1339 6703 6654 29 0 0 0 chr6 48518280 48518309 -140761245 + AT_rich Low_complexity Low_complexity 1 29 0 304 289 46 20 chr6 48518335 48518487 -140761067 + L1MC/D LINE L1 5078 5233 -913 480 254 171 20 chr6 48518505 48518757 -140760797 + L1MC/D LINE L1 5255 5544 -2264 2012 134 0 7 chr6 48518858 48519168 -140760386 + AluSg SINE Alu 1 308 0 192 77 0 0 chr6 48519390 48519416 -140760138 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 384 293 29 14 chr6 48519609 48519749 -140759805 - Charlie8 DNA MER1_type -2236 181 40 239 386 36 14 chr6 48519790 48519930 -140759624 - L3 LINE CR1 -389 1188 1046 414 306 44 11 chr6 48520085 48520268 -140759286 + MIR SINE MIR 45 233 -29 304 342 0 36 chr6 48520625 48520736 -140758818 - L3 LINE CR1 -1442 135 29 341 334 86 51 chr6 48520983 48521378 -140758176 + L2 LINE L2 2018 2426 -888 2156 160 108 43 chr6 48521414 48521884 -140757670 + MLT1D LTR MaLR 5 505 0 2274 75 0 33 chr6 48522619 48522925 -140756629 - AluY SINE Alu -15 296 1 1571 165 25 48 chr6 48523206 48523521 -140756033 - AluJo SINE Alu 0 312 5 345 269 54 54 chr6 48523687 48523779 -140755775 + L2 LINE L2 3184 3278 -35 1827 164 3 0 chr6 48523779 48524057 -140755497 + AluJb SINE Alu 7 288 -24 234 0 0 0 chr6 48524057 48524083 -140755471 + (GA)n Simple_repeat Simple_repeat 1 26 0 345 269 54 54 chr6 48524090 48524127 -140755427 + L2 LINE L2 3277 3313 0 738 220 17 22 chr6 48524864 48525097 -140754457 - MER106B DNA MER1_type 0 1059 1 783 147 31 23 chr6 48525111 48525240 -140754314 + FLAM_A SINE Alu 2 131 -2 431 167 198 8 chr6 48525569 48525695 -140753859 + L1MB8 LINE L1 6029 6178 0 2291 97 3 0 chr6 48525870 48526169 -140753385 + AluSp SINE Alu 1 300 -13 2173 117 0 0 chr6 48526857 48527139 -140752415 + AluSc SINE Alu 1 282 -27 1962 151 13 10 chr6 48527370 48527681 -140751873 + AluSx SINE Alu 1 312 0 230 159 0 0 chr6 48528458 48528502 -140751052 + MER20B DNA MER1_type 615 658 -125 618 140 27 33 chr6 48528723 48528873 -140750681 + MER20B DNA MER1_type 635 783 0 495 152 0 13 chr6 48529113 48529192 -140750362 + AluJ/FLAM SINE Alu 1 78 -234 2233 130 3 0 chr6 48579240 48579547 -140700007 + AluSx SINE Alu 1 308 -4 225 273 15 0 chr6 48579550 48579616 -140699938 - L1M4 LINE L1 -1813 4333 4267 883 175 66 12 chr6 48579875 48580041 -140699513 + FAM SINE Alu 1 175 0 839 162 102 0 chr6 48580232 48580399 -140699155 + MER5A DNA MER1_type 1 184 -5 3632 105 4 8 chr6 48580940 48581453 -140698101 + MER9 LTR ERVK 1 511 0 1778 150 7 11 chr6 48581541 48581821 -140697733 + AluJo SINE Alu 4 282 -30 201 74 0 0 chr6 48581824 48581851 -140697703 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2451 80 3 10 chr6 48582300 48582614 -140696940 + AluSx SINE Alu 1 312 0 551 242 159 6 chr6 48582878 48583035 -140696519 - MER5A DNA MER1_type 0 189 9 2352 74 6 19 chr6 48583328 48583639 -140695915 + AluY SINE Alu 1 307 -4 2280 100 3 0 chr6 48583772 48584071 -140695483 + AluSx SINE Alu 1 300 -12 723 206 169 34 chr6 48584209 48584559 -140694995 - L1ME4a LINE L1 -12 6109 5713 1688 164 11 3 chr6 48584801 48585087 -140694467 - AluJo SINE Alu -24 288 1 37 0 0 0 chr6 48585326 48585363 -140694191 + AT_rich Low_complexity Low_complexity 1 37 0 491 231 88 2 chr6 48585610 48585793 -140693761 + MER20B DNA MER1_type 1 236 -547 2511 154 147 10 chr6 48585796 48586374 -140693180 + L1MC3 LINE L1 7107 7763 -22 305 239 83 9 chr6 48586498 48586607 -140692947 + MER20B DNA MER1_type 367 483 -300 653 214 87 49 chr6 48586698 48586964 -140692590 + MER20B DNA MER1_type 506 781 -2 475 282 104 26 chr6 48587156 48587340 -140692214 + MLT1L LTR MaLR 132 351 -264 2438 93 54 0 chr6 48587340 48587694 -140691860 - THE1C LTR MaLR -2 373 1 475 282 104 26 chr6 48587694 48587818 -140691736 + MLT1L LTR MaLR 351 464 -151 1982 126 45 0 chr6 48587844 48588130 -140691424 - AluSq SINE Alu -14 299 1 1781 143 71 29 chr6 48588248 48588598 -140690956 + MLT1A1 LTR MaLR 1 365 0 1005 170 200 5 chr6 48588875 48589075 -140690479 + MER8 DNA MER2_type 1 239 0 1310 198 81 0 chr6 48591029 48591302 -140688252 - AluJo SINE Alu -17 295 1 544 211 14 14 chr6 48591892 48592039 -140687515 + GA-rich Low_complexity Low_complexity 2 148 0 1288 151 3 173 chr6 48592707 48593065 -140686489 - AluJb SINE Alu -3 299 3 2082 143 7 0 chr6 48593101 48593395 -140686159 + AluJo SINE Alu 1 296 -16 367 306 57 36 chr6 48593396 48593589 -140685965 + L1MEd LINE L1 848 1044 -5075 271 315 143 0 chr6 48593595 48593811 -140685743 + HAL1 LINE L1 1424 1670 -837 2391 84 3 0 chr6 48593827 48594126 -140685428 + AluSp SINE Alu 1 300 -13 1724 159 10 28 chr6 48594195 48594485 -140685069 + AluJo SINE Alu 1 285 -27 25 31 0 0 chr6 48594532 48594564 -140684990 + AT_rich Low_complexity Low_complexity 1 32 0 2111 102 3 0 chr6 48594664 48594948 -140684606 - AluY SINE Alu -25 286 2 22 35 0 0 chr6 48594953 48594982 -140684572 + AT_rich Low_complexity Low_complexity 1 29 0 280 268 57 0 chr6 48595137 48595260 -140684294 + L1MEd LINE L1 2217 2346 -3783 24 0 0 0 chr6 48595896 48595920 -140683634 + AT_rich Low_complexity Low_complexity 1 24 0 262 250 148 11 chr6 48596713 48596801 -140682753 - MIR SINE MIR -42 220 121 2399 70 0 0 chr6 48597193 48597513 -140682041 + AluY SINE Alu 1 311 0 1223 147 25 59 chr6 48597515 48597753 -140681801 + AluJo SINE Alu 1 230 -82 22 35 0 0 chr6 48597917 48597946 -140681608 + AT_rich Low_complexity Low_complexity 1 29 0 542 309 119 1 chr6 48599416 48599643 -140679911 + MIR SINE MIR 11 262 0 254 237 53 61 chr6 48599686 48599817 -140679737 + HAL1b LINE L1 1245 1340 -8 440 330 128 19 chr6 48600672 48600930 -140678624 + LTR16C LTR ERVL 88 373 -118 209 186 105 58 chr6 48601315 48601401 -140678153 - MIR SINE MIR -86 176 87 23 0 0 0 chr6 48601746 48601769 -140677785 + AT_rich Low_complexity Low_complexity 1 23 0 829 204 102 102 chr6 48601883 48602167 -140677387 + MER90 LTR ERV1 1 284 -291 655 214 35 40 chr6 48602167 48602340 -140677214 + MER76 LTR ERV 1 172 -516 979 229 81 83 chr6 48602354 48602879 -140676675 + MLT1E2 LTR MaLR 61 564 -62 640 86 0 0 chr6 48603253 48603334 -140676220 + AluSg SINE Alu 2 82 -228 1967 80 8 0 chr6 48603477 48603728 -140675826 - AluSc SINE Alu -13 296 44 317 222 100 0 chr6 48603733 48603823 -140675731 + L1ME4a LINE L1 5608 5706 -415 613 226 266 6 chr6 48603837 48604014 -140675540 - MIR SINE MIR -28 234 12 340 325 73 10 chr6 48604022 48604228 -140675326 + L1ME4a LINE L1 5753 5971 -150 2239 100 0 3 chr6 48604962 48605252 -140674302 - AluSg SINE Alu -18 292 4 385 330 0 25 chr6 48605278 48605396 -140674158 + MER89-int LTR ERV1 2001 2115 -2532 9225 226 69 16 chr6 48605402 48607308 -140672246 - L1MDa LINE L1 -1162 5378 3576 252 0 0 0 chr6 48607308 48607336 -140672218 + (TC)n Simple_repeat Simple_repeat 2 29 0 207 0 0 0 chr6 48607335 48607358 -140672196 + (TA)n Simple_repeat Simple_repeat 1 23 0 9225 226 69 16 chr6 48607336 48607357 -140672197 - L1MDa LINE L1 -2964 3576 3558 2424 54 0 0 chr6 48607357 48607661 -140671893 - AluY SINE Alu 0 304 1 9225 226 69 16 chr6 48607661 48608048 -140671506 - L1MDa LINE L1 -2982 3558 3193 1808 174 0 3 chr6 48608048 48608342 -140671212 + AluJb SINE Alu 1 293 -19 9225 226 69 16 chr6 48608342 48608954 -140670600 - L1MDa LINE L1 -3347 3193 2322 275 303 0 0 chr6 48608962 48609051 -140670503 - L1MC4 LINE L1 -1339 6703 6615 * 515 242 62 0 chr6 48609044 48609172 -140670382 - L1MDa LINE L1 -4208 2332 2197 * 3386 168 45 13 chr6 48609167 48609767 -140669787 - L1MDa LINE L1 -5906 634 16 306 308 72 56 chr6 48609797 48610017 -140669537 + MER89-int LTR ERV1 4428 4654 -2147 2010 159 60 20 chr6 48610017 48610368 -140669186 - MLT1A1 LTR MaLR 0 365 1 306 308 72 56 chr6 48610368 48610397 -140669157 + MER89-int LTR ERV1 4654 4681 -2120 2265 94 20 7 chr6 48610566 48610864 -140668690 - AluSg SINE Alu -8 302 1 249 135 0 0 chr6 48612075 48612127 -140667427 + (TA)n Simple_repeat Simple_repeat 2 53 0 32 26 0 0 chr6 48612127 48612166 -140667388 + AT_rich Low_complexity Low_complexity 1 39 0 319 43 0 0 chr6 48612310 48612357 -140667197 - AluSc SINE Alu 0 299 253 3849 112 73 60 chr6 48612804 48613864 -140665690 + MER11A LTR ERVK 1 1067 -4 277 250 227 15 chr6 48614058 48614190 -140665364 - MIR SINE MIR -71 191 32 2219 112 7 0 chr6 48614436 48614732 -140664822 - AluSx SINE Alu -14 298 1 670 235 60 12 chr6 48614835 48615001 -140664553 + MIR SINE MIR 89 262 0 2451 48 14 3 chr6 48615594 48615889 -140663665 - AluY SINE Alu -10 301 4 323 255 122 0 chr6 48615998 48616096 -140663458 + MIR3 SINE MIR 97 206 -2 250 352 46 0 chr6 48617185 48617293 -140662261 + MIR SINE MIR 9 121 -141 185 94 31 0 chr6 48617322 48617354 -140662200 + T-rich Low_complexity Low_complexity 3 35 0 1823 113 19 38 chr6 48617356 48617674 -140661880 - AluJb SINE Alu 0 312 1 182 272 111 74 chr6 48617772 48617853 -140661701 + L2 LINE L2 3189 3272 0 249 319 39 60 chr6 48618108 48618290 -140661264 - MLT1K LTR MaLR -409 179 2 2280 93 3 0 chr6 48618523 48618814 -140660740 - AluSx SINE Alu -20 292 1 405 280 54 46 chr6 48618854 48618965 -140660589 + L1ME3A LINE L1 4506 4615 -1531 1489 178 10 51 chr6 48618965 48619398 -140660156 - AluJb SINE Alu 0 421 1 405 280 54 46 chr6 48619398 48619545 -140660009 + L1ME3A LINE L1 4615 4768 -1378 1693 247 48 84 chr6 48619606 48620168 -140659386 + MLT1F1 LTR MaLR 1 567 0 1917 122 41 0 chr6 48620447 48620718 -140658836 + AluSx SINE Alu 1 282 -30 213 39 0 0 chr6 48620721 48620747 -140658807 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 544 246 32 23 chr6 48620790 48621010 -140658544 + L1ME3A LINE L1 5175 5396 -750 1279 165 53 0 chr6 48621012 48621218 -140658336 + AluSg/x SINE Alu 87 303 -9 229 67 22 44 chr6 48621225 48621270 -140658284 + (GGAAA)n Simple_repeat Simple_repeat 5 48 0 1055 128 0 11 chr6 48621271 48621450 -140658104 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 2387 93 0 0 chr6 48621451 48621752 -140657802 + AluSg SINE Alu 3 303 -7 803 295 84 33 chr6 48621774 48622283 -140657271 + L1ME3A LINE L1 5413 5947 -223 2441 175 25 14 chr6 48622657 48623097 -140656457 - MER65A LTR ERV1 0 445 1 1255 231 59 21 chr6 48623119 48623457 -140656097 - MLT1C LTR MaLR 0 467 117 2518 116 53 134 chr6 48623457 48624073 -140655481 + LTR14B LTR ERVK 17 562 -25 1088 232 37 61 chr6 48624280 48624608 -140654946 + MER11D LTR ERVK 103 422 -475 565 230 120 28 chr6 48624751 48624968 -140654586 + MER11D LTR ERVK 646 882 -15 491 48 0 0 chr6 48624979 48625041 -140654513 + LTR14A LTR ERVK 283 344 0 437 161 2 114 chr6 48625045 48625142 -140654412 - MLT1C LTR MaLR -352 115 49 2211 114 3 3 chr6 48625142 48625440 -140654114 + AluSx SINE Alu 2 299 -13 437 161 2 114 chr6 48625440 48625485 -140654069 - MLT1C LTR MaLR -418 49 1 404 72 0 169 chr6 48625609 48625692 -140653862 + MER4B LTR ERV1 1 69 -541 1906 116 73 25 chr6 48625820 48626280 -140653274 + MER4B LTR ERV1 86 610 0 329 285 48 92 chr6 48626674 48626881 -140652673 - MIR3 SINE MIR -3 205 8 241 272 49 12 chr6 48626898 48626979 -140652575 - MIR SINE MIR 0 262 179 276 287 7 52 chr6 48627187 48627323 -140652231 - L1ME LINE L1 -403 5718 5589 334 303 77 31 chr6 48627406 48627667 -140651887 - LTR40b LTR ERVL -54 408 136 1485 201 140 53 chr6 48627984 48628497 -140651057 + LTR64 LTR ERVK 1 558 0 1539 137 36 4 chr6 48629342 48629590 -140649964 + L1PB3 LINE L1 5890 6145 -9 339 89 0 0 chr6 48629590 48629646 -140649908 + (TA)n Simple_repeat Simple_repeat 2 57 0 2423 63 0 10 chr6 48629646 48629945 -140649609 - AluY SINE Alu -15 296 1 25 51 0 0 chr6 48629952 48629991 -140649563 + AT_rich Low_complexity Low_complexity 1 39 0 931 172 5 79 chr6 48630683 48630886 -140648668 + AluJo SINE Alu 85 272 -40 1448 137 0 5 chr6 48631012 48631231 -140648323 - AluJb SINE Alu -16 296 79 40 37 0 0 chr6 48631845 48631899 -140647655 + AT_rich Low_complexity Low_complexity 1 54 0 15150 26 1 4 chr6 48631913 48634373 -140645181 - L1PA4 LINE L1 -2 6153 3700 1673 159 14 28 chr6 48634413 48634734 -140644820 + AluJo SINE Alu 1 317 0 2930 119 58 2 chr6 48634954 48635406 -140644148 + MER31A LTR ERV1 1 477 -8 835 277 84 43 chr6 48635497 48635963 -140643591 - HAL1 LINE L1 -738 1769 1285 2375 138 109 3 chr6 48635970 48636355 -140643199 + MSTB LTR MaLR 1 426 0 31 0 0 0 chr6 48636472 48636503 -140643051 + AT_rich Low_complexity Low_complexity 1 31 0 2107 34 0 0 chr6 48636503 48636738 -140642816 - L1PA3 LINE L1 -3 6152 5918 912 155 0 0 chr6 48636857 48636986 -140642568 - FLAM_C SINE Alu -4 129 1 992 258 89 56 chr6 48637478 48638087 -140641467 - L1M4 LINE L1 -1992 4154 3526 1801 151 30 20 chr6 48638922 48639221 -140640333 + AluJb SINE Alu 1 302 -10 3627 153 30 54 chr6 48640130 48640234 -140639320 - L1M LINE L1 -744 5402 5297 2215 109 0 3 chr6 48640234 48640527 -140639027 - AluSx SINE Alu -20 292 1 3627 153 30 54 chr6 48640527 48641150 -140638404 - L1M LINE L1 -849 5297 4704 3452 126 28 121 chr6 48641148 48641901 -140637653 + L1MA9 LINE L1 5420 6102 -210 * 917 164 0 0 chr6 48641901 48642053 -140637501 - AluJb SINE Alu -13 299 148 1168 89 31 85 chr6 48642053 48642277 -140637277 + L1MA9 LINE L1 6101 6312 0 5076 125 35 36 chr6 48642402 48642568 -140636986 - L1MB4 LINE L1 0 6180 6015 2443 83 0 0 chr6 48642568 48642868 -140636686 + AluSq SINE Alu 1 300 -13 5076 125 35 36 chr6 48642868 48643656 -140635898 - L1MB4 LINE L1 -165 6015 5225 1733 175 13 0 chr6 48643676 48643979 -140635575 - AluJo SINE Alu -5 307 1 314 247 118 6 chr6 48644010 48644188 -140635366 - L1M4 LINE L1 -2695 3451 3254 1344 46 0 0 chr6 48644639 48644791 -140634763 - L1PA7 LINE L1 -6 6148 5997 334 300 0 30 chr6 48644890 48644990 -140634564 - MER5A DNA MER1_type 0 189 93 676 188 87 72 chr6 48644991 48645199 -140634355 + MLT1D LTR MaLR 1 211 -294 201 356 88 19 chr6 48645386 48645546 -140634008 + L3 LINE CR1 429 599 -978 5080 163 17 17 chr6 48646789 48647440 -140632114 - L1MB8 LINE L1 0 6178 5528 2533 70 0 0 chr6 48647440 48647742 -140631812 - AluY SINE Alu -9 302 1 5080 163 17 17 chr6 48647742 48648183 -140631371 - L1MB8 LINE L1 -650 5528 5088 30 27 0 0 chr6 48648214 48648251 -140631303 + AT_rich Low_complexity Low_complexity 1 37 0 1383 169 88 44 chr6 48648251 48648523 -140631031 - AluJo SINE Alu -28 284 1 2318 118 0 0 chr6 48651621 48651925 -140627629 - AluSx SINE Alu -8 304 1 22 0 0 0 chr6 48652568 48652590 -140626964 + AT_rich Low_complexity Low_complexity 1 22 0 736 155 16 8 chr6 48653010 48653139 -140626415 - FLAM_C SINE Alu -3 130 1 1240 175 59 3 chr6 48653374 48653660 -140625894 - MER33 DNA MER1_type -22 302 1 25 0 0 0 chr6 48653769 48653794 -140625760 + AT_rich Low_complexity Low_complexity 1 25 0 527 178 64 76 chr6 48654296 48654453 -140625101 - L1MA9 LINE L1 -36 6276 6122 306 123 0 0 chr6 48654759 48654816 -140624738 + (TC)n Simple_repeat Simple_repeat 2 58 0 374 326 96 76 chr6 48655006 48655297 -140624257 + L2 LINE L2 2976 3272 0 288 193 0 0 chr6 48655678 48655735 -140623819 - L1P LINE L1 -1217 4929 4873 3324 102 43 6 chr6 48655737 48656210 -140623344 + L1PA13 LINE L1 5633 6128 -35 180 0 0 0 chr6 48656210 48656230 -140623324 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 3324 102 43 6 chr6 48656230 48656266 -140623288 + L1PA13 LINE L1 6128 6161 -2 227 54 27 0 chr6 48657668 48657705 -140621849 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2004 111 4 7 chr6 48657705 48657985 -140621569 - AluSx SINE Alu -33 279 1 274 290 0 0 chr6 48658903 48658972 -140620582 + CT-rich Low_complexity Low_complexity 3 71 0 939 184 94 37 chr6 48660027 48660271 -140619283 - MIR SINE MIR -4 258 1 180 0 0 0 chr6 48660912 48660932 -140618622 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1388 71 0 5 chr6 48660952 48661150 -140618404 - L1PA8 LINE L1 -85 6087 5891 316 313 130 23 chr6 48661979 48662110 -140617444 - L2 LINE L2 -1 3271 3127 21 36 0 0 chr6 48662402 48662430 -140617124 + AT_rich Low_complexity Low_complexity 1 28 0 1925 103 110 7 chr6 48662846 48663119 -140616435 + AluSg SINE Alu 2 302 -8 32 26 0 0 chr6 48663504 48663543 -140616011 + AT_rich Low_complexity Low_complexity 1 39 0 2271 96 16 0 chr6 48663548 48663851 -140615703 - AluSc SINE Alu -1 308 1 1339 198 47 10 chr6 48663851 48664312 -140615242 - L1M4 LINE L1 -693 5491 5014 2460 85 0 0 chr6 48665944 48666249 -140613305 + AluSg SINE Alu 1 305 -5 25 31 0 0 chr6 48666410 48666442 -140613112 + AT_rich Low_complexity Low_complexity 1 32 0 487 291 120 8 chr6 48666546 48666780 -140612774 + MIR SINE MIR 2 261 -1 2113 127 3 0 chr6 48667497 48667789 -140611765 - AluSp SINE Alu -20 293 1 1897 155 10 20 chr6 48668188 48668484 -140611070 - AluJb SINE Alu -19 293 1 749 215 42 0 chr6 48668574 48668718 -140610836 - FRAM SINE Alu -14 152 3 251 315 35 19 chr6 48668789 48669049 -140610505 - L1MEd LINE L1 -3750 2379 2116 944 271 121 51 chr6 48669085 48669712 -140609842 - L1MEd LINE L1 -5168 951 281 1661 253 37 33 chr6 48669803 48670376 -140609178 - L1ME3 LINE L1 -6 6156 5582 1021 124 11 0 chr6 48670496 48670673 -140608881 - L1MB4 LINE L1 0 6180 6002 2466 57 0 3 chr6 48670704 48671001 -140608553 + AluY SINE Alu 2 297 -14 477 221 249 0 chr6 48671406 48671587 -140607967 + LTR50 LTR ERVL 53 278 -517 1885 158 75 32 chr6 48671860 48672298 -140607256 + LTR2B LTR ERV1 34 490 0 311 153 22 95 chr6 48672307 48672399 -140607155 + LTR50 LTR ERVL 437 793 -2 2125 103 13 30 chr6 48672517 48672690 -140606864 + AluSx SINE Alu 1 168 -144 4309 102 71 3 chr6 48672690 48673366 -140606188 + LTR30 LTR ERV1 1 722 0 2125 103 13 30 chr6 48673366 48673494 -140606060 + AluSx SINE Alu 168 297 -15 1130 155 24 0 chr6 48673504 48673717 -140605837 + L1MB7 LINE L1 5948 6165 -19 431 286 150 21 chr6 48674220 48674478 -140605076 - LTR33 LTR ERVL -125 398 73 287 341 156 10 chr6 48674627 48674941 -140604613 + L2 LINE L2 1468 1827 -1487 1962 143 19 16 chr6 48674993 48675357 -140604197 - L1MB8 LINE L1 0 6178 5814 558 216 0 0 chr6 48675375 48675472 -140604082 - FRAM SINE Alu -33 143 47 2728 168 16 30 chr6 48675476 48675928 -140603626 - L1MB8 LINE L1 -350 5828 5371 2062 117 0 17 chr6 48675928 48676228 -140603326 - AluSx SINE Alu -17 295 1 2728 168 16 30 chr6 48676228 48676706 -140602848 - L1MB8 LINE L1 -807 5371 4904 320 198 35 112 chr6 48676763 48676879 -140602675 - HAL1 LINE L1 -2384 123 17 1831 133 39 11 chr6 48677357 48677642 -140601912 - AluJo SINE Alu -19 293 1 993 184 6 0 chr6 48677658 48677821 -140601733 - FRAM SINE Alu -19 157 1 655 262 45 50 chr6 48677934 48678189 -140601365 + MIR SINE MIR 1 248 -14 1183 161 33 33 chr6 48678768 48679010 -140600544 - MER68 LTR ERV1 -315 247 6 237 65 0 0 chr6 48680163 48680194 -140599360 + (GA)n Simple_repeat Simple_repeat 2 32 0 944 126 32 146 chr6 48680209 48680455 -140599099 + MER20 DNA MER1_type 1 218 -1 1058 67 0 0 chr6 48682068 48682203 -140597351 + AluY SINE Alu 173 307 -4 36 23 0 0 chr6 48683171 48683214 -140596340 + AT_rich Low_complexity Low_complexity 1 43 0 539 259 270 0 chr6 48683470 48683896 -140595658 - L1ME3 LINE L1 -285 5946 5406 4718 63 3 0 chr6 48683897 48684495 -140595059 + L1PA7 LINE L1 5555 6154 0 332 299 7 0 chr6 48684740 48684884 -140594670 - L1ME3 LINE L1 -1101 5114 4970 494 222 24 29 chr6 48684924 48685131 -140594423 - L1ME3 LINE L1 -1555 4660 4455 321 260 0 0 chr6 48685132 48685232 -140594322 - L1ME3 LINE L1 -3595 2620 2521 355 321 95 16 chr6 48685440 48685630 -140593924 - L1ME3 LINE L1 -4081 2315 2111 2203 128 0 0 chr6 48685704 48686009 -140593545 + AluSx SINE Alu 1 305 -7 29 0 0 0 chr6 48686138 48686167 -140593387 + AT_rich Low_complexity Low_complexity 1 29 0 335 300 89 17 chr6 48686223 48686403 -140593151 - HAL1 LINE L1 -815 1692 1500 280 237 46 76 chr6 48686504 48686635 -140592919 - L1ME3 LINE L1 -4881 1324 1198 337 234 65 24 chr6 48686636 48686760 -140592794 + MER94 DNA DNA 1 129 -5 481 340 89 23 chr6 48687790 48688137 -140591417 - HAL1 LINE L1 -811 1696 1327 537 249 79 40 chr6 48688232 48688409 -140591145 + MIR SINE MIR 79 262 0 2278 90 7 0 chr6 48689696 48689985 -140589569 + AluSx SINE Alu 5 295 -17 384 22 0 0 chr6 48691437 48691482 -140588072 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 6006 76 5 7 chr6 48691482 48692324 -140587230 - L1PA10 LINE L1 -22 6146 5307 1990 142 7 7 chr6 48692449 48692751 -140586803 + AluSx SINE Alu 1 302 -10 868 330 46 13 chr6 48692765 48693223 -140586331 + HERVL LTR ERVL 3502 3974 -1680 777 93 12 81 chr6 48693245 48693406 -140586148 - Ricksha DNA DNA -7 3247 3098 663 129 83 0 chr6 48693394 48693526 -140586028 - Ricksha DNA DNA -1111 143 1 * 281 227 76 0 chr6 48693537 48693603 -140585951 - MIR SINE MIR -147 115 45 681 253 16 86 chr6 48693772 48694076 -140585478 + HAL1 LINE L1 1583 1865 -642 305 284 97 26 chr6 48694677 48694832 -140584722 + L1ME1 LINE L1 5955 6120 -46 453 295 132 25 chr6 48694980 48695776 -140583778 + L1M4 LINE L1 4067 4947 -1199 3237 207 80 31 chr6 48696010 48696968 -140582586 + L1M4 LINE L1 3725 4729 -1417 1590 201 7 0 chr6 48696969 48697262 -140582292 - AluJb SINE Alu -17 295 1 196 281 21 73 chr6 48697902 48697998 -140581556 - L3b LINE CR1 -361 1222 1132 183 284 68 27 chr6 48698639 48698713 -140580841 - L2 LINE L2 -1 3271 3195 383 40 0 0 chr6 48699264 48699314 -140580240 - MADE1 DNA Mariner -30 50 1 330 274 183 55 chr6 48700042 48700206 -140579348 + MIR SINE MIR 78 262 0 540 166 85 0 chr6 48701377 48701494 -140578060 - MER33 DNA MER1_type -255 69 1 2213 204 31 15 chr6 48702274 48702750 -140576804 - MLT1D LTR MaLR -1 504 21 407 231 69 23 chr6 48702771 48702901 -140576653 - MER97a DNA MER1_type? -720 174 39 423 0 0 0 chr6 48703133 48703180 -140576374 + (T)n Simple_repeat Simple_repeat 1 47 0 247 233 47 81 chr6 48703358 48703444 -140576110 + MER5A DNA MER1_type 36 118 -71 2057 130 51 0 chr6 48703785 48704116 -140575438 + MER7A DNA MER2_type 1 346 0 1823 162 17 6 chr6 48704126 48704477 -140575077 - L1MB7 LINE L1 -9 6175 5821 2516 206 11 19 chr6 48704477 48705166 -140574388 - L1MB7 LINE L1 -750 5396 4731 779 95 133 32 chr6 48705170 48705328 -140574226 - L1MB2 LINE L1 -7 6164 5991 880 245 50 0 chr6 48705365 48705704 -140573850 - L1MB7 LINE L1 -2803 3343 2988 2347 93 0 3 chr6 48705761 48706063 -140573491 + AluY SINE Alu 1 301 -10 180 355 94 14 chr6 48706239 48706377 -140573177 + MIR SINE MIR 64 212 -50 2037 160 0 19 chr6 48706548 48706866 -140572688 + AluJb SINE Alu 1 312 0 937 240 49 32 chr6 48707016 48707262 -140572292 + MIR SINE MIR 13 262 0 1471 122 41 0 chr6 48707996 48708217 -140571337 + MER30 DNA MER1_type 1 230 0 823 223 62 55 chr6 48708928 48709237 -140570317 + MER93b LTR ERV1 61 371 -2 922 96 7 0 chr6 48709699 48709835 -140569719 + L1MB8 LINE L1 6041 6177 -1 26 0 0 0 chr6 48709862 48709888 -140569666 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr6 48710343 48710374 -140569180 + AT_rich Low_complexity Low_complexity 1 31 0 211 321 64 48 chr6 48710396 48710583 -140568971 + L2 LINE L2 1037 1226 -2088 314 322 75 64 chr6 48710923 48711574 -140567980 - L2 LINE L2 -222 3050 2372 1258 129 0 0 chr6 48711704 48711882 -140567672 + AluSg/x SINE Alu 135 312 0 2422 68 0 3 chr6 48713807 48714102 -140565452 - AluY SINE Alu -17 294 1 321 262 103 35 chr6 48714459 48714604 -140564950 - MER5A DNA MER1_type 0 189 35 * 573 242 15 8 chr6 48714494 48714626 -140564928 + MER5A DNA MER1_type 57 189 0 4697 178 109 57 chr6 48714632 48714777 -140564777 - Looper DNA T2_type 0 1558 1422 1413 199 50 17 chr6 48714777 48715079 -140564475 - AluJo SINE Alu 0 312 1 2275 102 3 0 chr6 48715088 48715381 -140564173 - AluSp SINE Alu -17 296 3 4697 178 109 57 chr6 48715381 48716558 -140562996 - Looper DNA T2_type -143 1415 139 2101 127 0 0 chr6 48716558 48716865 -140562689 + AluSx SINE Alu 1 307 0 4697 178 109 57 chr6 48716865 48717012 -140562542 - Looper DNA T2_type -1419 139 1 1086 147 6 0 chr6 48717147 48717303 -140562251 - FRAM SINE Alu -19 157 1 182 244 128 26 chr6 48718379 48718457 -140561097 + L3 LINE CR1 1478 1563 -14 315 225 62 117 chr6 48718645 48718808 -140560746 - L1ME LINE L1 -4829 1252 802 213 241 23 81 chr6 48720616 48720703 -140558851 - MIR SINE MIR -45 217 136 201 274 24 48 chr6 48720855 48720939 -140558615 + MIR3 SINE MIR 125 206 -2 1114 160 88 0 chr6 48724334 48724528 -140555026 + MER58A DNA MER1_type 3 213 -11 1030 256 140 2 chr6 48726027 48726433 -140553121 - MLT1C LTR MaLR 0 467 6 23 0 0 0 chr6 48726490 48726513 -140553041 + AT_rich Low_complexity Low_complexity 1 23 0 348 194 126 0 chr6 48726579 48726682 -140552872 - MER94 DNA DNA 0 134 19 655 242 74 16 chr6 48727298 48727488 -140552066 + MIR SINE MIR 61 261 -1 406 324 87 17 chr6 48728300 48728473 -140551081 + MIR3 SINE MIR 18 202 -6 248 219 0 14 chr6 48729050 48729074 -140550480 + (TATATG)n Simple_repeat Simple_repeat 3 26 -48 2177 148 11 8 chr6 48729074 48729439 -140550115 - MER47A DNA MER2_type 0 366 1 248 219 0 14 chr6 48729439 48729487 -140550067 + (TATATG)n Simple_repeat Simple_repeat 26 74 0 222 193 24 12 chr6 48730249 48730332 -140549222 + (TA)n Simple_repeat Simple_repeat 1 84 0 306 303 0 30 chr6 48730427 48730526 -140549028 + L1MC4 LINE L1 6614 6709 -1333 396 274 0 8 chr6 48730662 48730695 -140548859 - L1ME4a LINE L1 -40 6081 6049 818 82 0 33 chr6 48730695 48730817 -140548737 + L1PA10 LINE L1 6051 6168 0 396 274 0 8 chr6 48730817 48730907 -140548647 - L1ME4a LINE L1 -72 6049 5959 2188 115 33 31 chr6 48730932 48731146 -140548408 - L1MA5A LINE L1 -2 6295 6078 1719 108 117 51 chr6 48731146 48731462 -140548092 + MER1B DNA MER1_type 1 337 0 2188 115 33 31 chr6 48731462 48731637 -140547917 - L1MA5A LINE L1 -219 6078 5905 452 267 146 55 chr6 48733949 48734114 -140545440 + MER5A DNA MER1_type 4 183 -6 452 315 60 82 chr6 48735375 48735778 -140543776 + L2 LINE L2 2869 3262 -10 282 342 67 0 chr6 48736349 48736469 -140543085 - MIR3 SINE MIR -14 194 67 1943 96 96 7 chr6 48736987 48737259 -140542295 - AluSg SINE Alu -14 296 1 631 244 51 6 chr6 48737277 48737433 -140542121 - MER63 DNA MER1_type -273 789 1 434 139 0 0 chr6 48738000 48738072 -140541482 - MER116 DNA Mariner -3 77 6 1195 237 135 28 chr6 48738356 48738582 -140540972 + L2 LINE L2 2127 2327 -987 2148 91 34 0 chr6 48738582 48738879 -140540675 + AluSg SINE Alu 1 307 -3 1195 237 135 28 chr6 48738879 48738924 -140540630 + L2 LINE L2 2327 2366 -948 253 0 26 26 chr6 48738924 48738962 -140540592 + (CAA)n Simple_repeat Simple_repeat 3 40 0 1195 237 135 28 chr6 48738962 48739082 -140540472 + L2 LINE L2 2366 2561 -753 986 237 52 87 chr6 48739815 48740182 -140539372 - MLT1I LTR MaLR -28 381 28 241 303 156 8 chr6 48740185 48740307 -140539247 - MIR SINE MIR -57 205 66 340 246 75 30 chr6 48741115 48741249 -140538305 - MLT1J LTR MaLR -366 145 6 232 269 0 0 chr6 48741249 48741301 -140538253 + L2 LINE L2 3203 3254 -18 875 145 94 153 chr6 48742454 48742648 -140536906 - L1MD1 LINE L1 0 6242 6079 318 50 0 0 chr6 48742648 48742688 -140536866 + (TG)n Simple_repeat Simple_repeat 2 41 0 875 145 94 153 chr6 48742688 48742866 -140536688 - L1MD1 LINE L1 -163 6079 5892 2319 94 0 31 chr6 48742892 48743212 -140536342 + AluSg SINE Alu 1 310 0 1904 152 14 7 chr6 48744105 48744402 -140535152 - AluJb SINE Alu -13 299 1 271 323 93 44 chr6 48744540 48744788 -140534766 - MIR SINE MIR -1 261 2 2615 75 49 3 chr6 48745324 48745672 -140533882 - THE1B LTR MaLR 0 364 1 185 314 0 0 chr6 48745751 48745802 -140533752 + L2 LINE L2 3222 3272 0 723 238 69 58 chr6 48747160 48747539 -140532015 + LTR16A1 LTR ERVL 61 443 -14 38 22 0 0 chr6 48749100 48749145 -140530409 + AT_rich Low_complexity Low_complexity 1 45 0 357 62 0 0 chr6 48749145 48749193 -140530361 + (CA)n Simple_repeat Simple_repeat 2 49 0 288 75 0 0 chr6 48749195 48749268 -140530286 + Alu SINE Alu 244 316 0 997 142 12 0 chr6 48749420 48749753 -140529801 + CT-rich Low_complexity Low_complexity 4 509 0 1818 178 6 13 chr6 48749753 48750067 -140529487 - AluJo SINE Alu 0 312 1 906 160 78 59 chr6 48750375 48750594 -140528960 - MER58A DNA MER1_type -1 223 1 219 305 12 37 chr6 48750649 48750731 -140528823 - MIR3 SINE MIR -21 187 108 45 45 0 0 chr6 48750910 48750976 -140528578 + AT_rich Low_complexity Low_complexity 1 66 0 786 276 141 15 chr6 48751883 48752281 -140527273 + HAL1 LINE L1 110 557 -1950 880 269 44 30 chr6 48752680 48753137 -140526417 - HsTC2 DNA Tc2 -327 1571 928 841 290 54 3 chr6 48753155 48753486 -140526068 + L1ME LINE L1 35 382 -6014 691 210 96 5 chr6 48753514 48753733 -140525821 + L1ME LINE L1 2586 2824 -3391 * 3756 226 72 46 chr6 48753732 48754176 -140525378 + L1ME LINE L1 3066 3497 -2718 970 112 20 117 chr6 48754176 48754425 -140525129 + L1MA7 LINE L1 6067 6291 0 3756 226 72 46 chr6 48754425 48755351 -140524203 + L1ME LINE L1 3497 4480 -1735 1916 135 0 46 chr6 48755351 48755678 -140523876 + AluSx SINE Alu 1 312 0 3756 226 72 46 chr6 48755678 48755783 -140523771 + L1ME LINE L1 4480 4581 -1634 1060 231 34 53 chr6 48755861 48756146 -140523408 + L1ME LINE L1 5232 5508 -725 2114 130 3 0 chr6 48756146 48756445 -140523109 + AluSx SINE Alu 3 302 -10 1060 231 34 53 chr6 48756445 48756612 -140522942 + L1ME LINE L1 5508 5677 -556 624 176 55 60 chr6 48756622 48756804 -140522750 - HsTC2 DNA Tc2 -1499 399 219 237 247 153 0 chr6 48756864 48756949 -140522605 - HsTC2 DNA Tc2 -1792 106 9 2350 80 3 3 chr6 48756949 48757249 -140522305 - AluSp SINE Alu -11 302 3 4215 113 25 3 chr6 48757450 48758098 -140521456 + L1PA15 LINE L1 5483 6144 -21 29 70 0 0 chr6 48759119 48759176 -140520378 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr6 48759438 48759466 -140520088 + AT_rich Low_complexity Low_complexity 1 28 0 947 34 0 0 chr6 48759589 48759707 -140519847 - L1PA4 LINE L1 0 6155 6038 2113 106 0 3 chr6 48759707 48759991 -140519563 - AluSx SINE Alu -26 286 4 180 250 154 0 chr6 48760218 48760270 -140519284 + L2 LINE L2 571 630 -2684 369 311 61 0 chr6 48760302 48760434 -140519120 + L2 LINE L2 20 159 -3155 210 203 279 13 chr6 48760573 48760652 -140518902 + L2 LINE L2 2263 2362 -952 1144 266 154 21 chr6 48760659 48761397 -140518157 + L2 LINE L2 2469 3311 -2 325 325 167 23 chr6 48761399 48761753 -140517801 - L2 LINE L2 -972 2342 1938 1628 193 3 3 chr6 48762839 48763124 -140516430 + AluJo SINE Alu 15 299 -13 2366 83 0 7 chr6 48763234 48763535 -140516019 - AluSq SINE Alu -10 303 5 1022 274 41 22 chr6 48763539 48764293 -140515261 + L1ME3A LINE L1 4887 5653 -509 293 321 25 0 chr6 48764288 48764447 -140515107 - L1M4 LINE L1 -1003 5143 4981 * 563 290 43 12 chr6 48764458 48764713 -140514841 + L1ME3A LINE L1 5676 5938 -232 224 217 43 58 chr6 48764987 48765056 -140514498 - MIR SINE MIR -80 128 61 290 326 174 16 chr6 48765177 48765367 -140514187 - L3 LINE CR1 -320 1257 1038 439 305 15 0 chr6 48765516 48765647 -140513907 + MIR SINE MIR 18 150 -58 594 197 112 101 chr6 48765686 48765874 -140513680 + MIR SINE MIR 24 213 -49 2434 274 65 33 chr6 48767233 48768179 -140511375 + L2 LINE L2 1795 2770 -544 349 276 110 59 chr6 48768311 48768583 -140510971 + L2 LINE L2 3028 3313 0 232 287 0 32 chr6 48768738 48768832 -140510722 + GA-rich Low_complexity Low_complexity 2 92 0 2133 115 0 32 chr6 48770326 48770639 -140508915 - AluSp SINE Alu -10 303 1 190 349 45 0 chr6 48770954 48771020 -140508534 + MIR SINE MIR 107 175 -87 1768 158 0 4 chr6 48771714 48772018 -140507536 + AluJo SINE Alu 23 325 0 302 266 0 51 chr6 48772092 48772171 -140507383 + MER58B DNA MER1_type 1 75 -266 1436 83 5 10 chr6 48772174 48772396 -140507158 - AluSg/x SINE Alu 0 312 92 1152 142 6 6 chr6 48772396 48772565 -140506989 - AluSq SINE Alu -144 169 1 1124 167 71 20 chr6 48772565 48772817 -140506737 + MER58B DNA MER1_type 77 341 0 784 202 18 6 chr6 48773033 48773201 -140506353 + FRAM SINE Alu 1 169 -7 21 0 0 0 chr6 48774368 48774389 -140505165 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 48774446 48774469 -140505085 + AT_rich Low_complexity Low_complexity 1 23 0 2250 234 99 33 chr6 48775454 48776023 -140503531 - L1ME3A LINE L1 -75 6095 5565 2111 101 31 0 chr6 48776023 48776309 -140503245 - AluSx SINE Alu -17 295 1 2250 234 99 33 chr6 48776309 48777130 -140502424 - L1ME3A LINE L1 -605 5565 4608 863 219 78 29 chr6 48777242 48777484 -140502070 + MER102a DNA MER1_type 74 327 -3 2392 183 26 51 chr6 48777547 48778117 -140501437 + MER74A LTR ERVL 3 558 0 482 183 0 0 chr6 48778263 48778345 -140501209 + Tigger3(Golem) DNA MER2_type 1 82 -2947 * 1213 169 35 54 chr6 48778343 48778556 -140500998 + Tigger3(Golem) DNA MER2_type 2722 2938 -91 2537 145 31 5 chr6 48778556 48778971 -140500583 - MSTB LTR MaLR 0 426 1 1213 169 35 54 chr6 48778971 48779002 -140500552 + Tigger3(Golem) DNA MER2_type 2938 2968 -61 2371 97 3 0 chr6 48779002 48779311 -140500243 - AluSg SINE Alu 0 310 1 1213 169 35 54 chr6 48779311 48779379 -140500175 + Tigger3(Golem) DNA MER2_type 2968 3029 0 236 306 0 111 chr6 48779381 48779489 -140500065 + L2 LINE L2 3102 3197 -75 450 307 140 6 chr6 48779554 48779883 -140499671 - L2 LINE L2 -929 2385 2013 2359 87 3 6 chr6 48779910 48780221 -140499333 + AluSq SINE Alu 1 310 -3 2213 92 3 13 chr6 48781305 48781608 -140497946 - AluSg SINE Alu -10 300 1 1206 254 51 67 chr6 48782194 48782248 -140497306 - MER68 LTR ERV1 -18 544 491 1409 142 4 21 chr6 48782248 48782487 -140497067 + MER46A DNA MER2_type 1 235 -1 1206 254 51 67 chr6 48782487 48782984 -140496570 - MER68 LTR ERV1 -71 491 2 24 32 0 0 chr6 48783693 48783724 -140495830 + AT_rich Low_complexity Low_complexity 1 31 0 1369 281 76 47 chr6 48783772 48783880 -140495674 - L3 LINE CR1 -20 1557 1454 535 275 78 0 chr6 48783880 48783963 -140495591 - MER3 DNA MER1_type -1 208 133 1999 158 0 0 chr6 48783963 48784254 -140495300 - AluJb SINE Alu -21 291 1 535 275 78 0 chr6 48784254 48784363 -140495191 - MER3 DNA MER1_type -76 133 1 1369 281 76 47 chr6 48784363 48784897 -140494657 - L3 LINE CR1 -123 1454 896 257 273 9 55 chr6 48786563 48786673 -140492881 - MIR SINE MIR -56 206 102 219 69 0 0 chr6 48786994 48787023 -140492531 + (GAATG)n Simple_repeat Simple_repeat 3 31 0 1957 148 7 10 chr6 48787583 48787887 -140491667 + AluJb SINE Alu 1 303 -9 1545 200 115 0 chr6 48788021 48788200 -140491354 - MER63B DNA MER1_type -626 436 279 2212 117 13 0 chr6 48788200 48788507 -140491047 - AluSx SINE Alu -1 311 1 1545 200 115 0 chr6 48788507 48788717 -140490837 - MER63B DNA MER1_type -783 279 2 210 239 0 0 chr6 48789156 48789202 -140490352 + L2 LINE L2 3259 3304 -9 942 51 0 0 chr6 48789794 48789912 -140489642 - AluSg/x SINE Alu -3 306 189 1168 71 0 0 chr6 48789912 48790052 -140489502 - AluSc SINE Alu -169 140 1 254 195 13 91 chr6 48790166 48790243 -140489311 + MIR SINE MIR 186 256 -6 26 0 0 0 chr6 48790363 48790389 -140489165 + AT_rich Low_complexity Low_complexity 1 26 0 210 328 16 0 chr6 48791092 48791156 -140488398 + L2 LINE L2 2713 2777 -537 340 282 13 0 chr6 48791228 48791384 -140488170 + (CATATA)n Simple_repeat Simple_repeat 5 162 0 284 225 246 49 chr6 48791386 48791528 -140488026 + MIR SINE MIR 86 255 -7 328 367 106 23 chr6 48791544 48791800 -140487754 + L2 LINE L2 2808 3084 -188 379 303 68 55 chr6 48793922 48794209 -140485345 + L1M2 LINE L1 2138 2392 -817 297 262 43 21 chr6 48794237 48794378 -140485176 + HAL1 LINE L1 2364 2507 0 557 153 250 21 chr6 48794746 48794890 -140484664 + MER45A DNA AcHobo 2 178 0 879 184 0 32 chr6 48795524 48795682 -140483872 - FRAM SINE Alu -24 152 1 252 262 128 40 chr6 48795956 48796105 -140483449 + L1ME LINE L1 5651 5812 -309 201 129 0 0 chr6 48796139 48796170 -140483384 + (AAATG)n Simple_repeat Simple_repeat 3 33 0 1960 121 36 4 chr6 48796302 48796582 -140482972 - AluJb SINE Alu -23 289 1 231 261 169 63 chr6 48797086 48797159 -140482395 + MIR SINE MIR 25 89 -173 2720 78 100 5 chr6 48797159 48797568 -140481986 - LTR7 LTR ERV1 -2 448 1 231 261 169 63 chr6 48797568 48797636 -140481918 + MIR SINE MIR 89 181 -81 1791 206 43 12 chr6 48797636 48798059 -140481495 + MER63B DNA MER1_type 1 436 0 238 26 51 0 chr6 48799010 48799049 -140480505 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 1924 113 34 24 chr6 48799631 48799923 -140479631 + AluSq SINE Alu 1 295 -18 563 0 15 0 chr6 48800687 48800754 -140478800 + (TTTTA)n Simple_repeat Simple_repeat 1 68 0 752 213 35 0 chr6 48800754 48800895 -140478659 - FRAM SINE Alu -30 146 1 461 293 43 5 chr6 48802552 48802740 -140476814 + L1M4 LINE L1 3881 4075 -2071 381 188 0 0 chr6 48805078 48805158 -140474396 + A-rich Low_complexity Low_complexity 1 80 0 1129 155 31 3 chr6 48806113 48806436 -140473118 - L1MA9 LINE L1 -17 6295 5868 209 354 15 0 chr6 48806443 48806508 -140473046 + L3b LINE CR1 1417 1482 -101 310 339 91 18 chr6 48807015 48807180 -140472374 - L3b LINE CR1 -73 1510 1334 306 0 0 0 chr6 48807584 48807618 -140471936 + (CA)n Simple_repeat Simple_repeat 2 35 0 233 200 173 13 chr6 48808774 48808849 -140470705 - MIR SINE MIR -73 189 103 230 298 0 18 chr6 48809232 48809289 -140470265 + MIR3 SINE MIR 105 160 -48 2270 119 0 0 chr6 48809471 48809782 -140469772 + AluSx SINE Alu 1 311 -1 645 210 73 85 chr6 48810095 48810400 -140469154 + L1MC4 LINE L1 7757 8038 -4 280 71 0 0 chr6 48811425 48811467 -140468087 - Alu SINE Alu -4 304 263 864 122 0 0 chr6 48811467 48811582 -140467972 + AluSq/x SINE Alu 1 115 -198 2581 73 0 3 chr6 48812426 48812766 -140466788 + L1PA7 LINE L1 5814 6152 -2 225 326 92 21 chr6 48812934 48813075 -140466479 + L3 LINE CR1 1053 1203 -374 3087 95 13 9 chr6 48813706 48814160 -140465394 + L1PA13 LINE L1 5708 6163 0 238 279 47 47 chr6 48814842 48814928 -140464626 - L2 LINE L2 -1 3271 3186 357 200 14 0 chr6 48815862 48815932 -140463622 - MLT1J2 LTR MaLR -22 428 358 676 286 44 5 chr6 48815985 48816188 -140463366 - MLT1I LTR MaLR -194 215 5 1382 87 0 22 chr6 48816236 48816421 -140463133 + AluSc SINE Alu 1 181 -128 300 53 0 0 chr6 48816437 48816475 -140463079 + (CA)n Simple_repeat Simple_repeat 2 39 0 702 218 67 10 chr6 48816476 48816669 -140462885 + L1MD2 LINE L1 6154 6357 -2 228 269 0 0 chr6 48817821 48817873 -140461681 - L2 LINE L2 -18 3254 3203 382 246 75 30 chr6 48817873 48818007 -140461547 + MLT1J LTR MaLR 6 145 -366 238 303 156 8 chr6 48818815 48818937 -140460617 + MIR SINE MIR 66 205 -57 1110 253 48 81 chr6 48818940 48819335 -140460219 + MLT1I LTR MaLR 28 409 0 1191 237 135 28 chr6 48820040 48820160 -140459394 - L2 LINE L2 -753 2561 2455 253 0 26 26 chr6 48820160 48820198 -140459356 + (TTG)n Simple_repeat Simple_repeat 3 40 0 1191 237 135 28 chr6 48820198 48820243 -140459311 - L2 LINE L2 -859 2455 2416 2130 91 34 0 chr6 48820243 48820540 -140459014 - AluSg SINE Alu -3 307 1 1191 237 135 28 chr6 48820540 48820766 -140458788 - L2 LINE L2 -898 2416 2127 457 149 0 0 chr6 48821050 48821124 -140458430 + MER116 DNA Mariner 6 79 -1 682 246 40 26 chr6 48821689 48821863 -140457691 + MER63 DNA MER1_type 1 171 -1517 1925 96 96 7 chr6 48821863 48822135 -140457419 + AluSg SINE Alu 1 296 -14 682 246 40 26 chr6 48822135 48822183 -140457371 + MER63 DNA MER1_type 171 1688 0 284 342 67 0 chr6 48822652 48822772 -140456782 + MIR3 SINE MIR 67 194 -14 431 315 60 82 chr6 48823343 48823746 -140455808 - L2 LINE L2 -10 3262 2869 182 274 39 0 chr6 48824534 48824585 -140454969 - MIR SINE MIR -11 251 199 449 267 146 55 chr6 48825007 48825172 -140454382 - MER5A DNA MER1_type -6 183 4 2210 115 33 31 chr6 48827484 48827659 -140451895 + L1MA5A LINE L1 5905 6078 -219 1649 114 117 51 chr6 48827659 48827975 -140451579 - MER1B DNA MER1_type 0 337 1 2210 115 33 31 chr6 48827975 48828189 -140451365 + L1MA5A LINE L1 6078 6295 -2 432 274 0 8 chr6 48828214 48828304 -140451250 + L1ME4a LINE L1 5959 6049 -72 821 82 0 33 chr6 48828304 48828426 -140451128 - L1PA10 LINE L1 0 6168 6051 432 274 0 8 chr6 48828426 48828459 -140451095 + L1ME4a LINE L1 6049 6081 -40 306 303 0 30 chr6 48828595 48828694 -140450860 - L1MC4 LINE L1 -1333 6709 6614 222 193 24 12 chr6 48828789 48828872 -140450682 + (TA)n Simple_repeat Simple_repeat 1 84 0 248 219 0 14 chr6 48829634 48829682 -140449872 + (CATATA)n Simple_repeat Simple_repeat 3 51 -23 2198 148 11 8 chr6 48829682 48830047 -140449507 + MER47A DNA MER2_type 1 366 0 248 219 0 14 chr6 48830047 48830071 -140449483 + (CATATA)n Simple_repeat Simple_repeat 51 74 0 393 330 87 17 chr6 48830648 48830821 -140448733 - MIR3 SINE MIR -6 202 18 654 242 74 16 chr6 48831633 48831823 -140447731 - MIR SINE MIR -1 261 61 363 225 108 0 chr6 48832422 48832542 -140447012 + MER94 DNA DNA 2 134 0 23 0 0 0 chr6 48832608 48832631 -140446923 + AT_rich Low_complexity Low_complexity 1 23 0 1154 256 140 2 chr6 48832688 48833094 -140446460 + MLT1C LTR MaLR 6 467 0 1183 153 79 47 chr6 48834572 48834787 -140444767 - MER58A DNA MER1_type 0 224 3 203 274 24 48 chr6 48838176 48838260 -140441294 - MIR3 SINE MIR -2 206 125 215 241 23 81 chr6 48838412 48838499 -140441055 + MIR SINE MIR 136 217 -45 233 211 0 0 chr6 48840091 48840143 -140439411 + L1MC5 LINE L1 7805 7856 -105 315 225 62 117 chr6 48840308 48840471 -140439083 + L1ME LINE L1 802 1252 -4829 182 244 128 26 chr6 48840659 48840737 -140438817 - L3 LINE CR1 -14 1563 1478 1078 147 6 0 chr6 48841813 48841969 -140437585 + FRAM SINE Alu 1 157 -19 4937 181 110 46 chr6 48842104 48842251 -140437303 + Looper DNA T2_type 1 137 -1421 2113 124 0 0 chr6 48842251 48842558 -140436996 - AluSx SINE Alu 0 307 1 4937 181 110 46 chr6 48842558 48843735 -140435819 + Looper DNA T2_type 137 1237 -321 2263 102 3 0 chr6 48843735 48844028 -140435526 + AluSp SINE Alu 3 296 -17 1406 205 46 13 chr6 48844037 48844339 -140435215 + AluJb SINE Alu 1 312 0 4937 181 110 46 chr6 48844339 48844466 -140435088 + Looper DNA T2_type 1244 1558 0 565 242 15 8 chr6 48844472 48844604 -140434950 - MER5A DNA MER1_type 0 189 57 315 262 103 35 chr6 48844494 48844639 -140434915 + MER5A DNA MER1_type 35 189 0 * 2426 68 0 3 chr6 48844996 48845291 -140434263 + AluY SINE Alu 1 294 -17 1241 129 0 0 chr6 48847218 48847396 -140432158 - AluSg/x SINE Alu 0 310 133 290 323 76 65 chr6 48847526 48848177 -140431377 + L2 LINE L2 2372 3050 -222 197 326 64 48 chr6 48848516 48848703 -140430851 - L2 LINE L2 -2088 1226 1037 24 32 0 0 chr6 48848725 48848756 -140430798 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr6 48849211 48849237 -140430317 + AT_rich Low_complexity Low_complexity 1 26 0 934 96 7 0 chr6 48849264 48849400 -140430154 - L1MB8 LINE L1 -1 6177 6041 925 220 62 55 chr6 48849862 48850171 -140429383 - MER93b LTR ERV1 -2 371 61 1495 118 41 0 chr6 48850881 48851102 -140428452 - MER30 DNA MER1_type 0 230 1 228 286 29 0 chr6 48851615 48851685 -140427869 - MLT1K LTR MaLR -384 204 133 936 240 49 32 chr6 48851837 48852083 -140427471 - MIR SINE MIR 0 262 13 1992 160 0 19 chr6 48852234 48852552 -140427002 - AluJb SINE Alu 0 312 1 186 355 94 14 chr6 48852723 48852861 -140426693 - MIR SINE MIR -50 212 64 2344 95 0 3 chr6 48853037 48853342 -140426212 - AluY SINE Alu -7 304 1 948 245 50 0 chr6 48853399 48853738 -140425816 + L1MB7 LINE L1 2988 3343 -2803 830 95 133 32 chr6 48853775 48853933 -140425621 + L1MB2 LINE L1 5991 6164 -7 2700 207 11 19 chr6 48853937 48854630 -140424924 + L1MB7 LINE L1 4731 5422 -750 1852 162 17 6 chr6 48854630 48854977 -140424577 + L1MB7 LINE L1 5821 6175 -9 2068 130 51 0 chr6 48854987 48855318 -140424236 - MER7A DNA MER2_type 0 346 1 247 233 47 81 chr6 48855659 48855745 -140423809 - MER5A DNA MER1_type -71 118 36 342 0 0 0 chr6 48855923 48855961 -140423593 + (A)n Simple_repeat Simple_repeat 1 38 0 407 231 69 23 chr6 48856193 48856323 -140423231 + MER97b DNA MER1_type? 39 174 -879 2188 208 31 15 chr6 48856344 48856820 -140422734 + MLT1D LTR MaLR 21 504 -1 554 156 85 0 chr6 48857600 48857717 -140421837 + MER33 DNA MER1_type 1 120 -93 330 274 183 55 chr6 48858888 48859052 -140420502 - MIR SINE MIR 0 262 78 383 40 0 0 chr6 48859780 48859830 -140419724 + MADE1 DNA Mariner 1 50 -30 183 284 68 27 chr6 48860381 48860455 -140419099 + L2 LINE L2 3195 3271 -1 196 281 21 73 chr6 48861096 48861192 -140418362 + L3b LINE CR1 1132 1222 -361 1612 201 7 0 chr6 48861833 48862126 -140417428 + AluJb SINE Alu 1 295 -17 3295 203 80 31 chr6 48862127 48863085 -140416469 - L1M4 LINE L1 -1417 4729 3725 449 295 132 25 chr6 48863319 48864115 -140415439 - L1M4 LINE L1 -1199 4947 4067 305 284 97 26 chr6 48864263 48864418 -140415136 - L1ME1 LINE L1 -46 6120 5955 739 267 17 48 chr6 48865019 48865311 -140414243 - HAL1 LINE L1 -642 1865 1583 281 227 76 0 chr6 48865480 48865546 -140414008 + MIR SINE MIR 45 115 -147 663 129 83 0 chr6 48865557 48865689 -140413865 + Ricksha DNA DNA 1 143 -1111 * 777 93 12 81 chr6 48865677 48865838 -140413716 + Ricksha DNA DNA 3098 3247 -7 868 339 44 5 chr6 48865890 48866318 -140413236 - HERVL LTR ERVL -1708 3946 3502 1968 149 7 7 chr6 48866332 48866634 -140412920 - AluSx SINE Alu -10 302 1 6043 76 4 7 chr6 48866759 48867652 -140411902 + L1PA10 LINE L1 5307 6196 0 2256 94 7 0 chr6 48869104 48869392 -140410162 - AluSx SINE Alu -18 294 5 537 249 79 40 chr6 48870679 48870856 -140408698 - MIR SINE MIR 0 262 79 467 343 89 23 chr6 48870952 48871299 -140408255 + HAL1 LINE L1 1327 1696 -811 324 242 65 24 chr6 48872329 48872453 -140407101 - MER94 DNA DNA -5 129 1 280 237 46 76 chr6 48872454 48872585 -140406969 + L1ME3A LINE L1 1198 1324 -4881 335 300 89 17 chr6 48872686 48872866 -140406688 + HAL1 LINE L1 1500 1692 -815 29 0 0 0 chr6 48872922 48872951 -140406603 + AT_rich Low_complexity Low_complexity 1 29 0 2228 125 0 0 chr6 48873080 48873385 -140406169 - AluSx SINE Alu -7 305 1 679 304 119 15 chr6 48873459 48873957 -140405597 + L1ME3A LINE L1 2111 2620 -3595 494 222 24 29 chr6 48873958 48874165 -140405389 + L1ME3A LINE L1 4455 4660 -1555 332 299 7 0 chr6 48874205 48874349 -140405205 + L1ME3A LINE L1 4970 5114 -1101 578 260 238 13 chr6 48874518 48874594 -140404960 + L1ME3A LINE L1 5334 5392 -839 4721 63 3 0 chr6 48874594 48875192 -140404362 - L1PA7 LINE L1 0 6154 5555 578 260 238 13 chr6 48875192 48875619 -140403935 + L1ME3A LINE L1 5392 5946 -285 308 284 154 35 chr6 48875716 48875885 -140403669 + L1ME3A LINE L1 6037 6225 -14 26 30 0 0 chr6 48875885 48875918 -140403636 + AT_rich Low_complexity Low_complexity 1 33 0 1051 73 0 0 chr6 48876886 48877023 -140402531 - AluY SINE Alu -2 309 173 967 122 32 150 chr6 48878636 48878883 -140400671 - MER20 DNA MER1_type -1 218 1 312 27 0 0 chr6 48878898 48878935 -140400619 + (TC)n Simple_repeat Simple_repeat 2 38 0 1183 161 33 33 chr6 48880091 48880333 -140399221 + MER68 LTR ERV1 6 247 -315 655 262 45 50 chr6 48880912 48881167 -140398387 - MIR SINE MIR -14 248 1 993 184 6 0 chr6 48881280 48881443 -140398111 + FRAM SINE Alu 1 157 -19 1831 133 39 11 chr6 48881459 48881744 -140397810 + AluJo SINE Alu 1 293 -19 320 198 35 112 chr6 48882222 48882338 -140397216 + HAL1 LINE L1 17 123 -2384 2758 168 16 29 chr6 48882395 48882873 -140396681 + L1MB8 LINE L1 4904 5373 -805 2062 117 0 17 chr6 48882873 48883173 -140396381 + AluSx SINE Alu 1 295 -17 2758 168 16 29 chr6 48883173 48883624 -140395930 + L1MB8 LINE L1 5373 5828 -350 558 216 0 0 chr6 48883628 48883725 -140395829 + FRAM SINE Alu 47 143 -33 1962 143 19 16 chr6 48883743 48884107 -140395447 + L1MB8 LINE L1 5814 6178 0 287 341 156 10 chr6 48884159 48884473 -140395081 - L2 LINE L2 -1487 1827 1468 431 286 150 21 chr6 48884622 48884880 -140394674 + LTR33 LTR ERVL 73 398 -125 1130 155 24 0 chr6 48885383 48885596 -140393958 - L1MB7 LINE L1 -19 6165 5948 2092 106 13 30 chr6 48885606 48885734 -140393820 - AluSx SINE Alu -15 297 168 4362 101 71 3 chr6 48885734 48886410 -140393144 - LTR30 LTR ERV1 0 722 1 2092 106 13 30 chr6 48886410 48886583 -140392971 - AluSx SINE Alu -144 168 1 311 153 22 95 chr6 48886701 48886793 -140392761 - LTR50 LTR ERVL -2 793 437 1885 158 75 32 chr6 48886802 48887240 -140392314 - LTR2B LTR ERV1 0 490 34 477 221 249 0 chr6 48887513 48887694 -140391860 - LTR50 LTR ERVL -517 278 53 2466 57 0 3 chr6 48888099 48888396 -140391158 - AluY SINE Alu -14 297 2 1021 124 11 0 chr6 48888427 48888604 -140390950 + L1MB4 LINE L1 6002 6180 0 1685 256 37 30 chr6 48888724 48889295 -140390259 + L1ME3 LINE L1 5582 6156 -6 944 271 121 51 chr6 48889385 48890012 -140389542 + L1MEd LINE L1 281 951 -5168 270 311 35 19 chr6 48890048 48890308 -140389246 + L1MEd LINE L1 2116 2379 -3750 735 222 42 0 chr6 48890379 48890523 -140389031 + FRAM SINE Alu 3 152 -14 1877 155 14 24 chr6 48890613 48890909 -140388645 + AluJb SINE Alu 1 293 -19 2124 127 3 0 chr6 48891308 48891600 -140387954 + AluSp SINE Alu 1 293 -20 487 291 120 8 chr6 48892316 48892550 -140387004 - MIR SINE MIR -1 261 2 25 31 0 0 chr6 48892654 48892686 -140386868 + AT_rich Low_complexity Low_complexity 1 32 0 2433 88 0 0 chr6 48892847 48893152 -140386402 - AluSg SINE Alu -5 305 1 1339 198 47 10 chr6 48894784 48895245 -140384309 + L1M4 LINE L1 5014 5491 -693 2274 96 17 0 chr6 48895245 48895547 -140384007 + AluSc SINE Alu 1 307 -2 32 26 0 0 chr6 48895552 48895591 -140383963 + AT_rich Low_complexity Low_complexity 1 39 0 1935 102 109 7 chr6 48895976 48896250 -140383304 - AluSg SINE Alu -7 303 2 23 33 0 0 chr6 48896666 48896696 -140382858 + AT_rich Low_complexity Low_complexity 1 30 0 316 313 130 23 chr6 48896988 48897119 -140382435 + L2 LINE L2 3127 3271 -1 1388 71 0 5 chr6 48897948 48898146 -140381408 + L1PA8 LINE L1 5891 6087 -85 180 0 0 0 chr6 48898166 48898186 -140381368 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 939 184 94 37 chr6 48898827 48899071 -140380483 + MIR SINE MIR 1 258 -4 274 290 0 0 chr6 48900126 48900195 -140379359 + GA-rich Low_complexity Low_complexity 3 71 0 2004 111 4 7 chr6 48901113 48901393 -140378161 + AluSx SINE Alu 1 279 -33 263 49 24 0 chr6 48901393 48901434 -140378120 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 3305 104 43 6 chr6 48902836 48902872 -140376682 - L1PA13 LINE L1 -2 6161 6128 180 0 0 0 chr6 48902872 48902892 -140376662 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 3305 104 43 6 chr6 48902892 48903365 -140376189 - L1PA13 LINE L1 -35 6128 5633 288 193 0 0 chr6 48903367 48903424 -140376130 + L1P LINE L1 4873 4929 -1217 378 326 96 76 chr6 48903805 48904096 -140375458 - L2 LINE L2 0 3272 2976 306 123 0 0 chr6 48904286 48904343 -140375211 + (GA)n Simple_repeat Simple_repeat 2 58 0 527 178 64 76 chr6 48904649 48904806 -140374748 + L1MA9 LINE L1 6122 6276 -36 25 0 0 0 chr6 48905308 48905333 -140374221 + AT_rich Low_complexity Low_complexity 1 25 0 1224 178 59 3 chr6 48905442 48905728 -140373826 + MER33 DNA MER1_type 1 302 -22 710 163 16 8 chr6 48905963 48906092 -140373462 + FLAM_C SINE Alu 1 130 -3 22 0 0 0 chr6 48906512 48906534 -140373020 + AT_rich Low_complexity Low_complexity 1 22 0 2347 116 0 0 chr6 48907177 48907480 -140372074 + AluSx SINE Alu 1 303 -9 1390 161 86 71 chr6 48910578 48910858 -140368696 + AluJo SINE Alu 1 284 -28 30 27 0 0 chr6 48910858 48910895 -140368659 + AT_rich Low_complexity Low_complexity 1 37 0 4636 163 17 17 chr6 48910926 48911367 -140368187 + L1MB8 LINE L1 5088 5528 -650 2513 73 0 0 chr6 48911367 48911669 -140367885 + AluY SINE Alu 1 302 -9 4636 163 17 17 chr6 48911669 48912320 -140367234 + L1MB8 LINE L1 5528 6178 0 218 356 88 19 chr6 48913562 48913722 -140365832 - L3 LINE CR1 -978 599 429 591 188 87 72 chr6 48913909 48914117 -140365437 - MLT1D LTR MaLR -294 211 1 345 300 0 30 chr6 48914118 48914218 -140365336 + MER5A DNA MER1_type 93 189 0 1261 46 0 0 chr6 48914317 48914469 -140365085 + L1PA7 LINE L1 5997 6148 -6 249 247 118 6 chr6 48914920 48915098 -140364456 + L1M4 LINE L1 3254 3451 -2695 1765 172 13 0 chr6 48915130 48915433 -140364121 + AluJo SINE Alu 1 307 -5 4626 125 35 36 chr6 48915453 48916241 -140363313 + L1MB4 LINE L1 5225 6015 -165 2430 84 0 0 chr6 48916241 48916540 -140363014 - AluSq SINE Alu -14 299 1 4626 125 35 36 chr6 48916540 48916706 -140362848 + L1MB4 LINE L1 6015 6180 0 1065 89 31 85 chr6 48916831 48917055 -140362499 - L1MA9 LINE L1 0 6312 6101 918 164 0 0 chr6 48917055 48917207 -140362347 + AluJb SINE Alu 148 299 -13 3298 131 29 94 chr6 48917207 48917938 -140361616 - L1MA9 LINE L1 -210 6102 5420 3261 156 30 54 chr6 48917936 48918559 -140360995 + L1 LINE L1 4704 5309 -849 * 2230 106 0 3 chr6 48918559 48918851 -140360703 + AluSx SINE Alu 1 291 -21 3261 156 30 54 chr6 48918851 48918955 -140360599 + L1 LINE L1 5309 5414 -744 1815 151 30 20 chr6 48919864 48920163 -140359391 - AluJb SINE Alu -10 302 1 734 261 89 56 chr6 48920998 48921607 -140357947 + L1M4 LINE L1 3526 4154 -1992 846 163 0 0 chr6 48922099 48922228 -140357326 + FLAM_C SINE Alu 1 129 -4 1982 34 0 0 chr6 48922347 48922582 -140356972 + L1PA3 LINE L1 5918 6152 -3 31 0 0 0 chr6 48922582 48922613 -140356941 + AT_rich Low_complexity Low_complexity 1 31 0 2211 135 109 3 chr6 48922731 48923116 -140356438 - MSTB LTR MaLR 0 426 1 673 279 84 43 chr6 48923123 48923589 -140355965 + HAL1 LINE L1 1285 1769 -738 2714 122 58 2 chr6 48923680 48924132 -140355422 - MER31A LTR ERV1 -8 477 1 1684 159 14 28 chr6 48924352 48924673 -140354881 - AluJo SINE Alu 0 317 1 14166 27 0 0 chr6 48924713 48927173 -140352381 + L1PA4 LINE L1 3700 6153 -2 40 37 0 0 chr6 48927187 48927241 -140352313 + AT_rich Low_complexity Low_complexity 1 54 0 447 170 140 5 chr6 48927850 48928021 -140351533 + L1MD3 LINE L1 7729 7994 -1 418 355 18 18 chr6 48928024 48928193 -140351361 - MIR3 SINE MIR -17 191 23 300 221 32 21 chr6 48928359 48928454 -140351100 - MIR SINE MIR -10 252 157 324 192 0 14 chr6 48928457 48928530 -140351024 - HsTC2 DNA Tc2 -4 1894 1823 185 0 40 0 chr6 48928743 48928768 -140350786 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 259 191 63 0 chr6 48928841 48928904 -140350650 - HsTC2 DNA Tc2 -1828 70 4 495 266 79 7 chr6 48928904 48929043 -140350511 - MIR SINE MIR -102 160 12 188 228 81 114 chr6 48929047 48929170 -140350384 - L2 LINE L2 -81 3232 3114 310 246 49 33 chr6 48930078 48930200 -140349354 - L1MC5 LINE L1 -32 7929 7806 957 133 27 0 chr6 48930601 48930751 -140348803 + L1PA16 LINE L1 5996 6149 -17 2118 104 0 0 chr6 48931235 48931513 -140348041 + AluSx SINE Alu 5 282 -30 22 56 0 0 chr6 48931940 48931976 -140347578 + AT_rich Low_complexity Low_complexity 1 36 0 356 287 82 8 chr6 48932078 48932200 -140347354 + MIR SINE MIR 20 150 -58 1246 213 147 60 chr6 48932208 48932705 -140346849 + MLT1F LTR MaLR 3 542 0 944 181 0 19 chr6 48932915 48933075 -140346479 - FRAM SINE Alu -8 158 2 2469 72 0 3 chr6 48933563 48933870 -140345684 + AluY SINE Alu 1 306 -5 752 299 141 24 chr6 48933981 48934142 -140345412 - L3 LINE CR1 -227 1350 1209 3172 88 2 5 chr6 48934142 48934586 -140344968 - L1PA8 LINE L1 -1 6171 5729 752 299 141 24 chr6 48934586 48934886 -140344668 - L3 LINE CR1 -368 1209 835 1008 92 0 0 chr6 48934902 48935069 -140344485 - AluY SINE Alu 0 320 154 311 313 56 26 chr6 48935297 48935492 -140344062 - L3 LINE CR1 -794 783 583 907 249 42 32 chr6 48935497 48935850 -140343704 + L1ME3A LINE L1 5593 5951 -219 2352 119 0 0 chr6 48936010 48936320 -140343234 + AluSg SINE Alu 1 310 0 721 298 47 13 chr6 48936370 48936605 -140342949 + MIR SINE MIR 20 262 0 2305 113 0 3 chr6 48936739 48937048 -140342506 - AluSx SINE Alu -4 308 1 28 86 0 0 chr6 48937112 48937182 -140342372 + AT_rich Low_complexity Low_complexity 1 70 0 2436 265 35 26 chr6 48937191 48938247 -140341307 + L1MC3 LINE L1 6698 7762 -23 1404 230 86 16 chr6 48938321 48938751 -140340803 - LTR40c LTR ERVL -5 460 1 391 248 102 79 chr6 48938766 48938797 -140340757 + L1MB7 LINE L1 5255 5284 -837 1884 169 3 16 chr6 48938797 48939105 -140340449 + AluJb SINE Alu 1 304 -8 391 248 102 79 chr6 48939105 48939289 -140340265 + L1MB7 LINE L1 5284 5478 -643 1728 209 6 12 chr6 48939289 48939609 -140339945 - 7SLRNA srpRNA srpRNA -2 318 1 391 248 102 79 chr6 48939609 48939621 -140339933 + L1MB7 LINE L1 5478 5488 -633 2565 140 66 30 chr6 48939751 48940308 -140339246 + L1MB7 LINE L1 5587 6163 -21 1824 166 51 0 chr6 48940392 48940687 -140338867 + AluJb SINE Alu 1 310 -2 2065 124 3 13 chr6 48941093 48941400 -140338154 + AluJb SINE Alu 1 304 -8 300 278 0 0 chr6 48942101 48942198 -140337356 + L1ME LINE L1 3950 4046 -2100 1771 189 7 0 chr6 48942265 48942572 -140336982 - AluJo SINE Alu -3 309 1 782 300 61 45 chr6 48942638 48942781 -140336773 + L1ME LINE L1 4102 4241 -1905 1959 168 3 0 chr6 48942781 48943090 -140336464 + AluJo SINE Alu 1 310 -2 782 300 61 45 chr6 48943090 48943887 -140335667 + L1ME LINE L1 4241 5057 -1089 805 167 0 0 chr6 48944038 48944170 -140335384 - FLAM_C SINE Alu -1 132 1 307 274 101 0 chr6 48944623 48944791 -140334763 + L1ME LINE L1 5325 5509 -665 60 15 0 0 chr6 48945906 48945973 -140333581 + AT_rich Low_complexity Low_complexity 1 67 0 1023 175 21 5 chr6 48947174 48947368 -140332186 - Charlie1a DNA MER1_type -1200 255 59 668 211 104 59 chr6 48947373 48947554 -140332000 + HAL1 LINE L1 2096 2296 -211 1655 158 39 3 chr6 48947554 48947838 -140331716 - AluSx SINE Alu -18 294 1 668 211 104 59 chr6 48947838 48947945 -140331609 + HAL1 LINE L1 2296 2397 -110 597 306 36 35 chr6 48948433 48948688 -140330866 - MIR SINE MIR -6 256 3 2200 91 17 17 chr6 48949396 48949693 -140329861 - AluSx SINE Alu -15 297 1 2218 109 0 26 chr6 48949755 48950066 -140329488 - AluSx SINE Alu -9 303 1 423 217 94 36 chr6 48950141 48950279 -140329275 + L2 LINE L2 2924 3069 -203 1828 184 3 10 chr6 48950503 48950812 -140328742 + AluJo SINE Alu 1 307 -5 272 259 76 38 chr6 48951280 48951411 -140328143 + MLT1J LTR MaLR 38 173 -338 230 293 34 54 chr6 48951446 48951593 -140327961 + L1MC/D LINE L1 5744 5887 -1921 2209 129 0 3 chr6 48951679 48951990 -140327564 + AluSx SINE Alu 1 310 -2 355 313 47 14 chr6 48952048 48952259 -140327295 + L1ME LINE L1 5599 5816 -305 221 296 235 31 chr6 48953846 48953944 -140325610 - MIR SINE MIR -121 141 24 2048 121 11 0 chr6 48954451 48954771 -140324783 - AluSx SINE Alu 0 323 1 461 120 429 23 chr6 48954842 48954975 -140324579 - MER5A DNA MER1_type 0 189 3 312 224 67 93 chr6 48955362 48955427 -140324127 - MIR SINE MIR -60 148 83 1753 181 3 10 chr6 48955427 48955725 -140323829 + AluJb SINE Alu 1 296 -16 312 224 67 93 chr6 48955725 48955830 -140323724 - MIR SINE MIR -125 83 2 225 268 24 37 chr6 48955945 48956027 -140323527 - LTR33 LTR ERVL 0 521 441 726 233 34 6 chr6 48956269 48956445 -140323109 - LTR33 LTR ERVL -340 181 1 2288 112 0 0 chr6 48956537 48956842 -140322712 + AluSx SINE Alu 1 305 -7 756 277 6 0 chr6 48957842 48958019 -140321535 - MER45A DNA AcHobo 0 178 1 2127 124 0 0 chr6 48958355 48958676 -140320878 - AluSx SINE Alu 0 321 1 565 197 82 8 chr6 48959025 48959147 -140320407 + MER94 DNA DNA 1 131 -3 2034 76 41 35 chr6 48959416 48959692 -140319862 + AluSc SINE Alu 1 281 -28 306 0 0 0 chr6 48959692 48959726 -140319828 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2034 76 41 35 chr6 48959726 48959739 -140319815 + AluSc SINE Alu 281 292 -17 1784 153 58 3 chr6 48959809 48960104 -140319450 - AluJb SINE Alu -1 311 1 189 0 0 0 chr6 48961092 48961113 -140318441 + (CA)n Simple_repeat Simple_repeat 1 21 0 218 32 32 0 chr6 48962151 48962182 -140317372 + (TC)n Simple_repeat Simple_repeat 1 32 0 1279 193 10 92 chr6 48962182 48962338 -140317216 - AluJb SINE Alu -20 292 172 207 100 0 0 chr6 48962338 48962368 -140317186 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1279 193 10 92 chr6 48962368 48962517 -140317037 - AluJb SINE Alu -140 172 12 371 134 0 60 chr6 48962526 48962593 -140316961 - AluJb SINE Alu -165 137 75 7402 153 35 4 chr6 48962615 48963831 -140315723 - L1M3f LINE L1 -4065 1263 11 2520 141 41 0 chr6 48964080 48964469 -140315085 + L1PA16 LINE L1 5758 6162 -4 195 313 104 10 chr6 48964679 48964775 -140314779 - L2 LINE L2 -217 3055 2951 29 60 0 0 chr6 48965052 48965102 -140314452 + AT_rich Low_complexity Low_complexity 1 50 0 275 195 12 73 chr6 48965414 48965496 -140314058 + L1MC4a LINE L1 5649 5725 -2083 298 333 12 36 chr6 48965532 48965700 -140313854 + L1MC4a LINE L1 5729 5892 -1916 1481 148 0 4 chr6 48966135 48966364 -140313190 + AluJb SINE Alu 64 291 -21 1125 222 56 101 chr6 48966576 48966645 -140312909 + L1M4 LINE L1 4315 4386 -1760 2155 110 10 7 chr6 48966645 48966944 -140312610 + AluSx SINE Alu 1 300 -12 2162 106 0 20 chr6 48966953 48967255 -140312299 + AluSx SINE Alu 1 296 -16 1125 222 56 101 chr6 48967255 48967728 -140311826 + L1M4 LINE L1 4394 4842 -1304 1802 159 10 0 chr6 48967762 48968078 -140311476 + AluSx SINE Alu 3 312 0 1118 305 100 22 chr6 48968118 48968518 -140311036 - LTR16A LTR ERVL -4 446 16 368 331 18 12 chr6 48968665 48968828 -140310726 - HERVL LTR ERVL -310 5344 5181 1497 323 58 34 chr6 48969031 48969461 -140310093 + ERVL LTR ERVL 4123 4582 -1182 611 100 0 0 chr6 48969461 48969541 -140310013 + MADE1 DNA Mariner 1 80 0 1497 323 58 34 chr6 48969541 48969882 -140309672 + ERVL LTR ERVL 4582 4913 -851 388 283 20 16 chr6 48970013 48970129 -140309425 - HERVL LTR ERVL -1908 3088 2988 2019 156 0 0 chr6 48970147 48970449 -140309105 - AluJb SINE Alu -10 302 1 4485 287 77 25 chr6 48970451 48972122 -140307432 - HERVL LTR ERVL -2078 2918 1161 569 235 163 41 chr6 48972123 48972319 -140307235 + L1ME3A LINE L1 5943 6162 -8 267 238 69 0 chr6 48972535 48972636 -140306918 + L2 LINE L2 1991 2098 -1216 200 300 30 60 chr6 48972858 48972958 -140306596 + L2 LINE L2 2127 2223 -1091 22 0 0 0 chr6 48973015 48973037 -140306517 + AT_rich Low_complexity Low_complexity 1 22 0 1117 169 133 28 chr6 48973283 48973538 -140306016 + L1MB8 LINE L1 5860 6141 -37 708 156 23 104 chr6 48973562 48973735 -140305819 - MER5A DNA MER1_type -28 161 3 954 144 108 85 chr6 48973746 48973836 -140305718 - MER33 DNA MER1_type -2262 323 237 1618 191 3 20 chr6 48973836 48974140 -140305414 + AluJo SINE Alu 1 299 -13 954 144 108 85 chr6 48974140 48974186 -140305368 - MER33 DNA MER1_type -2348 237 194 2187 123 3 0 chr6 48974186 48974488 -140305066 + AluSx SINE Alu 1 303 -9 954 144 108 85 chr6 48974488 48974656 -140304898 - MER33 DNA MER1_type -2391 194 11 344 237 17 68 chr6 48974714 48974832 -140304722 + MIR SINE MIR 127 238 -24 501 277 58 41 chr6 48974992 48975234 -140304320 - MLT1L LTR MaLR 0 615 370 1846 189 0 3 chr6 48975355 48975667 -140303887 + AluJb SINE Alu 1 311 -1 552 202 153 0 chr6 48975677 48975801 -140303753 + L1ME3A LINE L1 6020 6162 -8 2070 129 0 3 chr6 48975815 48976101 -140303453 + AluSx SINE Alu 5 289 -23 1836 171 0 7 chr6 48976140 48976445 -140303109 - AluJb SINE Alu -9 303 1 517 243 38 117 chr6 48976554 48976673 -140302881 - L1ME3A LINE L1 -318 5852 5725 2355 87 7 0 chr6 48976673 48976972 -140302582 - AluSx SINE Alu -11 301 1 517 243 38 117 chr6 48976972 48977051 -140302503 - L1ME3A LINE L1 -445 5725 5686 2418 84 3 7 chr6 48977051 48977360 -140302194 - AluSp SINE Alu -5 308 1 517 243 38 117 chr6 48977360 48977477 -140302077 - L1ME3A LINE L1 -484 5686 5561 1238 249 4 8 chr6 48977477 48977936 -140301618 - MLT1J LTR MaLR -2 509 6 320 270 87 0 chr6 48977953 48978068 -140301486 - L1ME3A LINE L1 -2249 5559 5435 853 252 88 19 chr6 48978072 48978390 -140301164 - L2 LINE L2 -5 3308 2969 239 70 18 211 chr6 48978392 48978449 -140301105 + Alu SINE Alu 105 150 -151 264 209 9 86 chr6 48978463 48978568 -140300986 - L2 LINE L2 -411 2902 2806 317 191 53 32 chr6 48978698 48978792 -140300762 + MLT1I LTR MaLR 314 409 0 2436 82 0 3 chr6 48978831 48979135 -140300419 - AluSx SINE Alu -9 303 1 2112 97 7 37 chr6 48979205 48979504 -140300050 - AluSx SINE Alu -22 290 1 963 93 43 0 chr6 48979611 48979750 -140299804 + L1PA14 LINE L1 6017 6161 0 344 294 62 62 chr6 48979790 48980198 -140299356 - L1M4 LINE L1 -3301 2845 2435 2271 100 0 0 chr6 48980198 48980488 -140299066 - AluSp SINE Alu -23 290 1 344 294 62 62 chr6 48980488 48980528 -140299026 - L1M4 LINE L1 -3710 2436 2397 542 235 138 19 chr6 48980634 48980919 -140298635 - MLT1I LTR MaLR -2 489 63 246 32 0 0 chr6 48981048 48981079 -140298475 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 1891 152 0 20 chr6 48981353 48981650 -140297904 + AluJo SINE Alu 1 291 -21 407 233 132 37 chr6 48981908 48982097 -140297457 + MLT1I LTR MaLR 2 208 -201 249 75 125 0 chr6 48982117 48982157 -140297397 + MLT1I LTR MaLR 358 402 -7 372 246 179 8 chr6 48982402 48982536 -140297018 + MER5A DNA MER1_type 15 171 -18 876 206 136 0 chr6 48982608 48982686 -140296868 + MER3 DNA MER1_type 1 67 -142 1668 174 37 0 chr6 48982686 48982857 -140296697 - AluJo SINE Alu -7 305 117 216 0 0 0 chr6 48982857 48982881 -140296673 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1668 174 37 0 chr6 48982881 48983003 -140296551 - AluJo SINE Alu -195 117 1 876 206 136 0 chr6 48983003 48983108 -140296446 + MER3 DNA MER1_type 67 209 0 254 244 221 0 chr6 48983110 48983196 -140296358 + L2 LINE L2 3150 3254 -18 2260 116 3 3 chr6 48983918 48984228 -140295326 - AluSx SINE Alu -2 310 1 2030 119 3 17 chr6 48984388 48984681 -140294873 + AluSg SINE Alu 1 289 -21 3695 144 55 10 chr6 48984986 48985602 -140293952 + LTR48B LTR ERV1 1 644 0 250 214 36 0 chr6 48986125 48986181 -140293373 + Charlie8 DNA MER1_type 153 210 -2207 243 143 16 16 chr6 48986889 48986952 -140292602 - L1ME4a LINE L1 0 6121 6059 703 282 33 14 chr6 48987264 48987477 -140292077 + MIR SINE MIR 2 218 -44 218 297 14 14 chr6 48987577 48987651 -140291903 - L2 LINE L2 -188 3084 3011 204 278 196 30 chr6 48987643 48987776 -140291778 + MIR SINE MIR 48 202 -60 * 1543 150 0 85 chr6 48988231 48988525 -140291029 - AluJo SINE Alu -35 277 9 2173 120 3 13 chr6 48988551 48988867 -140290687 - AluSp SINE Alu 0 313 1 687 147 9 0 chr6 48989097 48989206 -140290348 + AluJb SINE Alu 200 309 -3 378 339 51 8 chr6 48989286 48989404 -140290150 - MIR3 SINE MIR -52 156 34 906 333 48 15 chr6 48989463 48989917 -140289637 + L2 LINE L2 1851 2319 -995 2097 153 162 59 chr6 48990039 48990497 -140289057 - MLT1D LTR MaLR 0 505 1 314 360 40 17 chr6 48991059 48991234 -140288320 + L2 LINE L2 2498 2676 -638 1871 132 0 7 chr6 48991424 48991705 -140287849 - AluJb SINE Alu -23 289 11 221 206 33 65 chr6 48991736 48991828 -140287726 - MIR SINE MIR -55 207 119 238 290 0 32 chr6 48992237 48992361 -140287193 + (CGG)n Simple_repeat Simple_repeat 3 122 0 21 49 0 49 chr6 48992477 48992538 -140287016 + GC_rich Low_complexity Low_complexity 1 58 0 315 296 43 26 chr6 48993659 48993774 -140285780 + L2 LINE L2 3185 3301 -12 309 327 106 75 chr6 48994909 48995230 -140284324 - L2 LINE L2 -8 3264 2934 471 175 289 0 chr6 48995286 48995400 -140284154 - MSTD LTR MaLR -168 228 82 224 342 102 35 chr6 48995580 48995893 -140283661 - L2 LINE L2 -729 2585 2252 421 249 118 70 chr6 48995953 48996182 -140283372 + MIR SINE MIR 7 246 -16 1405 175 145 10 chr6 48996430 48996756 -140282798 - MSTD LTR MaLR -24 404 1 2293 125 0 0 chr6 48996795 48997099 -140282455 + AluSx SINE Alu 1 304 -8 761 158 8 8 chr6 48997102 48997235 -140282319 - MER5A DNA MER1_type -36 153 21 237 324 0 40 chr6 48998130 48998204 -140281350 - L2 LINE L2 -2 3270 3200 269 310 53 54 chr6 48998780 48998988 -140280566 - MIR3 SINE MIR -41 221 10 1666 170 10 29 chr6 48999270 48999581 -140279973 - AluJo SINE Alu -7 305 1 2606 164 71 34 chr6 49000035 49000092 -140279462 - MLT1F1 LTR MaLR -7 560 507 2365 75 3 0 chr6 49000092 49000384 -140279170 - AluSp SINE Alu -20 293 1 2606 164 71 34 chr6 49000384 49000523 -140279031 - MLT1F1 LTR MaLR -60 507 375 198 0 0 0 chr6 49000523 49000545 -140279009 + (CTGGGG)n Simple_repeat Simple_repeat 3 24 0 2606 164 71 34 chr6 49000545 49000885 -140278669 - MLT1F1 LTR MaLR -192 375 3 5608 205 83 65 chr6 49001586 49001994 -140277560 - L1MC4 LINE L1 0 8042 7643 2225 84 29 26 chr6 49001994 49002305 -140277249 - AluSq SINE Alu -1 312 1 5608 205 83 65 chr6 49002305 49002379 -140277175 - L1MC4 LINE L1 -399 7643 7572 2335 107 7 0 chr6 49002379 49002689 -140276865 - AluSq SINE Alu -1 312 1 5608 205 83 65 chr6 49002689 49004016 -140275538 - L1MC4 LINE L1 -470 7572 6200 402 168 112 96 chr6 49004020 49004145 -140275409 - L1MC4a LINE L1 -1630 6178 6052 428 307 86 0 chr6 49004162 49004325 -140275229 - L1ME LINE L1 -443 5719 5543 311 267 12 0 chr6 49004646 49004732 -140274822 - L2 LINE L2 -45 3268 3182 274 227 76 0 chr6 49004813 49004879 -140274675 - L1MC4a LINE L1 -1901 5907 5837 183 333 117 18 chr6 49005663 49005774 -140273780 - L2 LINE L2 -2 3270 3149 1946 72 57 8 chr6 49005775 49005792 -140273762 + L1MA2 LINE L1 6026 6041 -263 204 40 0 0 chr6 49005792 49005817 -140273737 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1946 72 57 8 chr6 49005817 49006064 -140273490 + L1MA2 LINE L1 6041 6303 -1 232 222 202 10 chr6 49006345 49006444 -140273110 - MIR SINE MIR -26 236 119 268 218 242 16 chr6 49006462 49006586 -140272968 + MIR3 SINE MIR 54 205 -3 27 29 0 0 chr6 49007486 49007520 -140272034 + AT_rich Low_complexity Low_complexity 1 34 0 183 80 0 0 chr6 49007603 49007628 -140271926 + (TTTTTA)n Simple_repeat Simple_repeat 2 26 0 284 132 0 0 chr6 49007629 49007667 -140271887 - U2 snRNA snRNA -150 38 1 463 164 0 14 chr6 49007673 49007746 -140271808 - FLAM_A SINE Alu -19 124 53 904 132 230 163 chr6 49007747 49008195 -140271359 - LTR12 LTR ERV1 -236 478 1 9863 100 25 9 chr6 49008195 49009698 -140269856 - HERV9 LTR ERV1 0 8399 6872 30518 110 11 15 chr6 49009699 49015260 -140264294 - HERV9 LTR ERV1 -2726 5673 54 604 131 107 95 chr6 49015234 49015392 -140264162 - LTR12 LTR ERV1 -231 483 301 * 324 147 0 40 chr6 49015392 49015467 -140264087 - LTR30 LTR ERV1 -98 624 553 684 179 231 13 chr6 49015468 49015702 -140263852 - LTR12 LTR ERV1 -429 285 1 274 152 0 22 chr6 49015702 49015748 -140263806 - FLAM_A SINE Alu -75 57 13 447 142 50 33 chr6 49015763 49015883 -140263671 + MER20B DNA MER1_type 661 782 -1 1343 247 147 5 chr6 49015894 49016331 -140263223 - MLT1E LTR MaLR -94 499 1 797 261 234 15 chr6 49016431 49016969 -140262585 - L2 LINE L2 -22 3291 2630 723 288 109 67 chr6 49017003 49017757 -140261797 - L2 LINE L2 -190 3082 2254 284 273 53 141 chr6 49017799 49018103 -140261451 - L2 LINE L2 -37 3235 2959 343 255 20 20 chr6 49018305 49018403 -140261151 - MIR3 SINE MIR -15 193 96 1650 136 70 0 chr6 49018633 49018891 -140260663 - AluSx SINE Alu -36 276 1 1047 201 69 50 chr6 49018959 49019277 -140260277 - MER33 DNA MER1_type 0 324 1 182 303 158 0 chr6 49019748 49019824 -140259730 - L2 LINE L2 -2973 341 254 206 238 0 0 chr6 49021077 49021119 -140258435 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 418 282 215 25 chr6 49021208 49021492 -140258062 - L1MC4a LINE L1 -1965 5843 5506 1240 161 0 24 chr6 49022852 49023063 -140256491 - AluJb SINE Alu -21 291 86 225 135 27 0 chr6 49024543 49024580 -140254974 + L1MD3 LINE L1 6827 6864 -1131 717 253 25 15 chr6 49025334 49025536 -140254018 + MIR SINE MIR 59 262 0 350 207 11 0 chr6 49025784 49025871 -140253683 - Charlie7 DNA MER1_type -2126 486 399 1834 163 77 21 chr6 49025888 49026416 -140253138 - MLT2A2 LTR ERVL 0 554 2 1189 116 35 60 chr6 49026416 49026615 -140252939 - AluJo SINE Alu -33 279 86 805 245 52 92 chr6 49026617 49026883 -140252671 - Charlie7 DNA MER1_type -2203 409 134 2272 114 0 3 chr6 49026883 49027182 -140252372 + AluSx SINE Alu 1 298 -14 805 245 52 92 chr6 49027182 49027235 -140252319 - Charlie7 DNA MER1_type -2478 134 80 666 197 51 0 chr6 49027235 49027352 -140252202 + FLAM_A SINE Alu 2 124 -9 805 245 52 92 chr6 49027352 49027455 -140252099 - Charlie7 DNA MER1_type -2532 80 3 343 377 48 24 chr6 49027614 49027781 -140251773 + L2 LINE L2 3098 3268 -4 347 281 34 16 chr6 49029731 49029984 -140249570 - L1MC4a LINE L1 -302 5819 5669 420 100 0 0 chr6 49030089 49030149 -140249405 - Tigger5 DNA MER2_type -2 2321 2262 470 339 104 9 chr6 49030149 49030494 -140249060 - L1MC4a LINE L1 -1589 4557 4180 1706 156 80 3 chr6 49030517 49030805 -140248749 - AluJo SINE Alu -2 310 1 577 258 33 60 chr6 49031052 49031234 -140248320 + MER5B DNA MER1_type 1 177 -1 21 0 0 0 chr6 49031575 49031596 -140247958 + AT_rich Low_complexity Low_complexity 1 21 0 630 284 62 5 chr6 49031878 49032089 -140247465 + MER58A DNA MER1_type 1 223 -1 979 160 0 0 chr6 49032776 49032920 -140246634 + FRAM SINE Alu 1 139 -37 2297 83 3 0 chr6 49033305 49033595 -140245959 - AluSp SINE Alu -22 291 1 2532 47 0 3 chr6 49035413 49035712 -140243842 - AluY SINE Alu -13 298 1 248 237 35 26 chr6 49036616 49036730 -140242824 + CT-rich Low_complexity Low_complexity 5 119 0 586 315 114 10 chr6 49037134 49037528 -140242026 - L1MC4a LINE L1 -1943 5865 5431 2291 84 14 0 chr6 49040032 49040328 -140239226 - AluSq SINE Alu -13 300 1 901 220 106 4 chr6 49040451 49040687 -140238867 - MIR SINE MIR -1 261 2 231 278 75 83 chr6 49041104 49041370 -140238184 - L2 LINE L2 -576 2738 2475 492 184 57 7 chr6 49041373 49041514 -140238040 - MER104 DNA Tc2 0 180 33 190 313 30 30 chr6 49041635 49041734 -140237820 + L2 LINE L2 2171 2269 -1045 248 333 30 30 chr6 49041763 49041862 -140237692 + MIR SINE MIR 9 107 -155 337 337 60 42 chr6 49041999 49042165 -140237389 + L2 LINE L2 3104 3272 0 2278 118 0 0 chr6 49045145 49045450 -140234104 - AluSq SINE Alu -8 305 1 375 23 0 0 chr6 49046248 49046292 -140233262 + (TG)n Simple_repeat Simple_repeat 1 44 0 1772 183 6 10 chr6 49046621 49046932 -140232622 + AluJo SINE Alu 1 310 -2 22 0 0 0 chr6 49047163 49047185 -140232369 + AT_rich Low_complexity Low_complexity 1 22 0 261 278 14 28 chr6 49047217 49047289 -140232265 - MIR SINE MIR -104 104 34 1952 166 0 3 chr6 49047896 49048186 -140231368 - AluSx SINE Alu -23 289 1 2117 125 3 10 chr6 49048711 49049015 -140230539 - AluSx SINE Alu -10 302 1 396 305 13 32 chr6 49049184 49049338 -140230216 + L2 LINE L2 3159 3309 -4 226 282 137 34 chr6 49049404 49049521 -140230033 - MIR SINE MIR -76 186 58 971 214 9 49 chr6 49049687 49049911 -140229643 + MIR SINE MIR 17 231 -31 258 314 134 23 chr6 49050407 49050579 -140228975 - MIR SINE MIR -54 208 18 2176 108 3 0 chr6 49051025 49051320 -140228234 - AluSq SINE Alu -17 296 1 951 109 0 14 chr6 49051479 49051617 -140227937 - FLAM_C SINE Alu -7 136 1 305 218 69 10 chr6 49052196 49052297 -140227257 - L1ME4a LINE L1 -1 6120 6014 258 167 21 0 chr6 49053247 49053295 -140226259 - MIR SINE MIR -30 232 184 288 341 85 23 chr6 49054203 49054332 -140225222 - L2 LINE L2 -15 3257 3121 274 284 30 52 chr6 49056825 49056959 -140222595 + L2 LINE L2 3167 3297 -16 410 279 32 26 chr6 49057494 49057648 -140221906 + MIR SINE MIR 108 262 0 358 304 129 32 chr6 49058139 49058356 -140221198 - L3b LINE CR1 -244 1339 1102 237 264 66 33 chr6 49058914 49059005 -140220549 - L1ME LINE L1 -532 5589 5496 339 269 91 69 chr6 49059065 49059531 -140220023 - L1ME LINE L1 -751 5395 4958 550 290 147 21 chr6 49059920 49060199 -140219355 - L2 LINE L2 0 3313 3000 1747 185 6 10 chr6 49060220 49060234 -140219320 - AluSx SINE Alu 0 312 299 198 0 0 0 chr6 49060234 49060256 -140219298 + (TG)n Simple_repeat Simple_repeat 1 22 0 1747 185 6 10 chr6 49060256 49060554 -140219000 - AluSx SINE Alu -13 299 1 352 338 150 0 chr6 49061722 49061855 -140217699 - MIR SINE MIR -8 254 102 344 339 34 8 chr6 49062900 49063018 -140216536 - L2 LINE L2 -3 3269 3149 23 33 0 0 chr6 49066150 49066180 -140213374 + AT_rich Low_complexity Low_complexity 1 30 0 684 69 50 0 chr6 49066180 49066281 -140213273 - HY1 scRNA scRNA -6 106 1 333 254 147 18 chr6 49066283 49066662 -140212892 - L1ME4a LINE L1 -347 5774 5389 1213 160 68 5 chr6 49066789 49066995 -140212559 + MER20 DNA MER1_type 1 219 0 2382 96 0 13 chr6 49067310 49067624 -140211930 - AluY SINE Alu -1 310 1 654 288 264 45 chr6 49067841 49068149 -140211405 - L2 LINE L2 -2 3270 3031 2498 66 0 3 chr6 49068149 49068454 -140211100 + AluY SINE Alu 1 304 -7 654 288 264 45 chr6 49068454 49069341 -140210213 - L2 LINE L2 -241 3031 1826 361 247 152 19 chr6 49069353 49069511 -140210043 + L1MC/D LINE L1 5588 5766 -2042 292 295 147 32 chr6 49069788 49069978 -140209576 - L2 LINE L2 -1489 1825 1614 4336 108 50 1 chr6 49070291 49070957 -140208597 - L1PA16 LINE L1 -9 6157 5460 4387 128 3 14 chr6 49070957 49071658 -140207896 + L1PA15 LINE L1 5472 6164 -1 4711 178 22 8 chr6 49071834 49073010 -140206544 - L1PA16 LINE L1 -690 5476 4290 3638 206 20 42 chr6 49073004 49073957 -140205597 + L1PA16 LINE L1 3344 4275 -1871 * 1451 215 21 14 chr6 49073959 49074243 -140205311 - AluJo SINE Alu -16 296 11 315 288 159 15 chr6 49074255 49074387 -140205167 - MIR SINE MIR -86 176 26 388 268 115 38 chr6 49074696 49074853 -140204701 - MIR SINE MIR -63 199 31 1887 118 10 34 chr6 49074856 49075173 -140204381 - AluSq SINE Alu 0 313 1 2394 81 13 7 chr6 49075186 49075496 -140204058 - AluSx SINE Alu 0 312 1 234 0 0 0 chr6 49075654 49075680 -140203874 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 405 0 0 0 chr6 49075679 49075724 -140203830 + (CA)n Simple_repeat Simple_repeat 1 45 0 1033 144 25 12 chr6 49078362 49078522 -140201032 - FRAM SINE Alu -16 160 1 242 220 0 0 chr6 49079026 49079076 -140200478 - MER2 DNA MER2_type -28 317 268 898 102 12 203 chr6 49079117 49079373 -140200181 - MER2 DNA MER2_type -135 210 4 1834 106 98 0 chr6 49079458 49079733 -140199821 - AluSq SINE Alu -11 302 1 847 246 35 47 chr6 49080533 49080789 -140198765 + MIR SINE MIR 2 254 -8 2638 242 234 12 chr6 49081093 49081615 -140197939 - L2 LINE L2 -189 3124 2719 2374 103 0 0 chr6 49081615 49081926 -140197628 + AluY SINE Alu 1 311 0 2638 242 234 12 chr6 49081926 49082540 -140197014 - L2 LINE L2 -594 2719 1741 219 275 62 0 chr6 49082874 49082954 -140196600 - MIR SINE MIR -4 258 174 560 290 115 103 chr6 49084282 49084699 -140194855 - L2 LINE L2 0 3272 2851 1480 144 0 5 chr6 49084780 49084995 -140194559 - AluJb SINE Alu -9 303 90 2405 175 8 29 chr6 49084995 49085264 -140194290 - Tigger1 DNA MER2_type -1948 470 214 2147 134 7 0 chr6 49085264 49085571 -140193983 + AluSx SINE Alu 1 309 -3 2405 175 8 29 chr6 49085571 49085781 -140193773 - Tigger1 DNA MER2_type -2204 214 1 290 293 46 11 chr6 49085884 49086039 -140193515 - MLT1L LTR MaLR -117 496 239 933 181 60 219 chr6 49086090 49086329 -140193225 + L2 LINE L2 2446 2721 -592 555 16 0 0 chr6 49086329 49086393 -140193161 + (TG)n Simple_repeat Simple_repeat 2 65 0 933 181 60 219 chr6 49086393 49086429 -140193125 + L2 LINE L2 2721 2761 -552 2590 59 0 0 chr6 49086429 49086733 -140192821 - AluY SINE Alu -7 304 1 492 183 4 0 chr6 49086733 49086838 -140192716 - L1MB7 LINE L1 -42 6142 6037 933 181 60 219 chr6 49086838 49086899 -140192655 + L2 LINE L2 2760 2829 -484 1640 138 4 0 chr6 49086899 49087145 -140192409 + AluSx SINE Alu 60 306 -6 933 181 60 219 chr6 49087145 49087274 -140192280 + L2 LINE L2 2829 2977 -336 2477 93 0 0 chr6 49087274 49087586 -140191968 - AluSq SINE Alu -1 312 1 933 181 60 219 chr6 49087586 49087891 -140191663 + L2 LINE L2 2977 3329 16 1214 172 182 27 chr6 49087891 49088187 -140191367 + MER2 DNA MER2_type 2 343 -1 933 181 60 219 chr6 49088187 49088259 -140191295 + L2 LINE L2 3329 3232 -81 2586 41 0 0 chr6 49088259 49088554 -140191000 - AluY SINE Alu -15 296 2 933 181 60 219 chr6 49088554 49088626 -140190928 + L2 LINE L2 3231 3313 0 641 271 115 66 chr6 49088755 49089292 -140190262 - L2 LINE L2 -5 3308 2700 401 309 23 17 chr6 49089437 49089612 -140189942 - Charlie8 DNA MER1_type -2164 253 78 661 274 39 74 chr6 49089711 49090145 -140189409 - L2 LINE L2 -727 2587 2169 2227 81 0 3 chr6 49090491 49090774 -140188780 - AluSc SINE Alu -27 282 1 267 271 131 9 chr6 49090875 49090982 -140188572 - L2 LINE L2 -5 3308 3189 1518 171 4 47 chr6 49092999 49093147 -140186407 + AluJo SINE Alu 1 133 -179 1524 173 0 70 chr6 49093147 49093459 -140186095 + AluJb SINE Alu 23 312 0 1518 171 4 47 chr6 49093459 49093584 -140185970 + AluJo SINE Alu 133 262 -50 433 262 32 8 chr6 49094374 49094500 -140185054 - MLT1J LTR MaLR -312 199 71 14767 146 37 15 chr6 49095104 49099280 -140180274 - L1MA3 LINE L1 0 7724 3450 5683 170 51 9 chr6 49099279 49100365 -140179189 - L1MA3 LINE L1 -6419 1146 16 * 7127 100 59 15 chr6 49100378 49101612 -140177942 - L1M1 LINE L1 -4166 3399 2111 1682 84 4 0 chr6 49101612 49101850 -140177704 - MER11A LTR ERVK 0 1266 1028 409 86 0 0 chr6 49151850 49151908 -140127646 - Alu SINE Alu -253 58 1 254 195 13 91 chr6 49152022 49152099 -140127455 + MIR SINE MIR 186 256 -6 26 0 0 0 chr6 49152219 49152245 -140127309 + AT_rich Low_complexity Low_complexity 1 26 0 208 328 16 0 chr6 49152948 49153012 -140126542 + L2 LINE L2 2713 2777 -537 301 322 0 0 chr6 49153091 49153181 -140126373 - L1MC4 LINE L1 -1338 6704 6615 201 283 17 0 chr6 49153182 49153242 -140126312 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 292 225 246 49 chr6 49153244 49153386 -140126168 + MIR SINE MIR 86 255 -7 318 367 106 23 chr6 49153402 49153658 -140125896 + L2 LINE L2 2808 3084 -188 379 303 68 55 chr6 49155780 49156067 -140123487 + L1M2 LINE L1 2138 2392 -817 333 262 43 21 chr6 49156095 49156236 -140123318 + HAL1 LINE L1 2364 2507 0 607 153 250 21 chr6 49156604 49156748 -140122806 + MER45A DNA AcHobo 2 178 0 871 184 0 32 chr6 49157382 49157540 -140122014 - FRAM SINE Alu -24 152 1 290 262 128 40 chr6 49157814 49157963 -140121591 + L1ME LINE L1 5651 5812 -309 201 129 0 0 chr6 49157997 49158028 -140121526 + (AAATG)n Simple_repeat Simple_repeat 3 33 0 1941 121 36 4 chr6 49158160 49158440 -140121114 - AluJb SINE Alu -23 289 1 205 264 171 50 chr6 49158944 49159015 -140120539 + MIR SINE MIR 25 86 -176 2699 78 100 5 chr6 49159015 49159424 -140120130 - LTR7 LTR ERV1 -2 448 1 205 264 171 50 chr6 49159424 49159492 -140120062 + MIR SINE MIR 86 181 -81 1829 206 43 12 chr6 49159492 49159915 -140119639 + MER63B DNA MER1_type 1 436 0 238 26 51 0 chr6 49160866 49160905 -140118649 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 1918 113 34 27 chr6 49161487 49161780 -140117774 + AluSq SINE Alu 1 295 -18 473 0 18 0 chr6 49162544 49162601 -140116953 + (TTTTA)n Simple_repeat Simple_repeat 1 58 0 752 213 35 0 chr6 49162601 49162742 -140116812 - FRAM SINE Alu -30 146 1 461 293 43 5 chr6 49164399 49164587 -140114967 + L1M4 LINE L1 3881 4075 -2071 381 188 0 0 chr6 49166925 49167005 -140112549 + A-rich Low_complexity Low_complexity 1 80 0 1062 155 31 3 chr6 49167960 49168283 -140111271 - L1MA9 LINE L1 -17 6295 5868 208 354 15 0 chr6 49168290 49168355 -140111199 + L3b LINE CR1 1417 1482 -101 305 339 91 18 chr6 49168862 49169027 -140110527 - L3b LINE CR1 -73 1510 1334 414 0 0 0 chr6 49169431 49169477 -140110077 + (CA)n Simple_repeat Simple_repeat 2 47 0 231 200 173 13 chr6 49170633 49170708 -140108846 - MIR SINE MIR -73 189 103 227 298 0 18 chr6 49171091 49171148 -140108406 + MIR3 SINE MIR 105 160 -48 2296 119 0 0 chr6 49171330 49171641 -140107913 + AluSx SINE Alu 1 311 -1 574 220 58 89 chr6 49171954 49172245 -140107309 + L1MC4 LINE L1 7757 8038 -4 268 71 0 0 chr6 49173284 49173326 -140106228 - Alu SINE Alu -4 298 257 862 122 0 0 chr6 49173326 49173441 -140106113 + AluSq/x SINE Alu 1 115 -198 2588 73 0 3 chr6 49174285 49174625 -140104929 + L1PA7 LINE L1 5814 6152 -2 239 326 92 21 chr6 49174793 49174934 -140104620 + L3 LINE CR1 1053 1203 -374 3096 96 2 0 chr6 49175565 49176001 -140103553 + L1PA13 LINE L1 5708 6144 -19 238 279 47 47 chr6 49176701 49176787 -140102767 - L2 LINE L2 -1 3271 3186 337 200 14 0 chr6 49177721 49177791 -140101763 - MLT1J2 LTR MaLR -22 428 358 634 281 44 5 chr6 49177844 49178047 -140101507 - MLT1I LTR MaLR -194 215 5 2232 82 0 42 chr6 49178095 49178401 -140101153 + AluSc SINE Alu 1 293 -16 2064 151 8 27 chr6 49179115 49179485 -140100069 + MLT1A1 LTR MaLR 3 365 0 288 342 32 19 chr6 49180307 49180462 -140099092 - L2 LINE L2 -472 2842 2686 469 296 101 16 chr6 49181059 49181248 -140098306 - MIR SINE MIR 0 262 58 483 260 31 8 chr6 49181961 49182088 -140097466 + L2 LINE L2 3184 3313 0 624 62 0 0 chr6 49182216 49182297 -140097257 + (CCCTAA)n Simple_repeat Simple_repeat 1 81 0 2154 128 0 3 chr6 49183797 49184101 -140095453 + AluSg SINE Alu 1 303 -7 381 261 8 42 chr6 49184303 49184422 -140095132 - MIR SINE MIR -84 178 64 193 200 20 80 chr6 49184451 49184501 -140095053 + L2 LINE L2 417 463 -2851 2029 143 3 3 chr6 49185016 49185316 -140094238 - AluSx SINE Alu -12 300 1 259 178 22 0 chr6 49185438 49185483 -140094071 + MIR SINE MIR 79 124 -138 2288 75 17 3 chr6 49185602 49185895 -140093659 - AluSp SINE Alu -9 304 8 1058 148 62 19 chr6 49186237 49186447 -140093107 + MER20 DNA MER1_type 1 219 0 365 80 0 0 chr6 49186930 49186980 -140092574 - MADE1 DNA Mariner -30 50 1 369 75 0 0 chr6 49187444 49187497 -140092057 + (TG)n Simple_repeat Simple_repeat 1 53 0 2443 78 0 0 chr6 49187712 49188007 -140091547 - AluY SINE Alu -16 295 1 275 286 120 63 chr6 49191059 49191234 -140088320 - MIR3 SINE MIR -9 199 15 369 292 85 94 chr6 49191536 49191691 -140087863 + L1ME4a LINE L1 3233 3388 -2758 2724 23 3 0 chr6 49191691 49192001 -140087553 + AluY SINE Alu 1 311 0 369 292 85 94 chr6 49192001 49192238 -140087316 + L1ME4a LINE L1 3388 3623 -2523 1934 151 3 23 chr6 49192238 49192542 -140087012 - AluJb SINE Alu -14 298 1 369 292 85 94 chr6 49192542 49192617 -140086937 + L1ME4a LINE L1 3623 3697 -2449 2197 113 0 0 chr6 49192617 49192921 -140086633 + AluSx SINE Alu 1 304 0 780 363 2 25 chr6 49192997 49193396 -140086158 + L1MA6 LINE L1 1565 1954 -5532 209 56 0 28 chr6 49193943 49193979 -140085575 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 14292 166 36 48 chr6 49193989 49195274 -140084280 + L1MA6 LINE L1 3344 4642 -3077 2245 80 17 13 chr6 49195274 49195573 -140083981 - AluY SINE Alu -11 300 1 14292 166 36 48 chr6 49195573 49198713 -140080841 + L1MA6 LINE L1 4642 7719 0 660 299 104 30 chr6 49198869 49199663 -140079891 + L1ME4a LINE L1 3887 4739 -1407 348 302 93 66 chr6 49199697 49200063 -140079491 + L1ME4a LINE L1 4787 5167 -979 2373 88 12 3 chr6 49200063 49200403 -140079151 + L1PB1 LINE L1 5809 6151 0 348 302 93 66 chr6 49200403 49200446 -140079108 + L1ME4a LINE L1 5167 5207 -939 276 30 0 0 chr6 49200516 49200549 -140079005 + (T)n Simple_repeat Simple_repeat 1 33 0 2287 96 7 3 chr6 49200631 49200934 -140078620 - AluSp SINE Alu -9 304 1 6509 38 4 32 chr6 49200957 49201790 -140077764 - SVA Other Other 0 1386 578 508 319 44 14 chr6 49201822 49202117 -140077437 + L1ME4a LINE L1 5601 5904 -217 2093 127 0 7 chr6 49202119 49202455 -140077099 + AluSx SINE Alu 3 336 0 587 140 162 11 chr6 49202503 49202732 -140076822 - MER46C DNA MER2_type -22 316 5 285 186 113 10 chr6 49202761 49202858 -140076696 + L1ME4a LINE L1 6009 6115 -6 8180 200 39 19 chr6 49203234 49204089 -140075465 + L1MB7 LINE L1 3020 3857 -2327 1579 150 166 0 chr6 49204089 49204402 -140075152 - MLT1A1 LTR MaLR 0 365 1 8180 200 39 19 chr6 49204402 49206632 -140072922 + L1MB7 LINE L1 3857 6165 -19 885 243 148 56 chr6 49206646 49207379 -140072175 - L2 LINE L2 -12 3301 2535 25 31 0 0 chr6 49209773 49209805 -140069749 + AT_rich Low_complexity Low_complexity 1 32 0 568 167 10 0 chr6 49211459 49211555 -140067999 + MER46A DNA MER2_type 1 97 -139 446 133 133 0 chr6 49211564 49211639 -140067915 + MER46A DNA MER2_type 151 235 -1 405 259 35 88 chr6 49211957 49212185 -140067369 + L2 LINE L2 3092 3307 -6 449 306 34 57 chr6 49213465 49213674 -140065880 + MIR3 SINE MIR 2 205 -3 377 233 47 12 chr6 49213872 49213958 -140065596 + MER5A DNA MER1_type 16 104 -85 208 298 35 0 chr6 49215268 49215325 -140064229 - MER5B DNA MER1_type -113 65 7 21 0 0 0 chr6 49217173 49217194 -140062360 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 49218265 49218293 -140061261 + AT_rich Low_complexity Low_complexity 1 28 0 306 0 0 0 chr6 49218366 49218400 -140061154 + (TG)n Simple_repeat Simple_repeat 2 35 0 203 156 0 0 chr6 49219047 49219079 -140060475 - L2 LINE L2 -5 3308 3277 2135 130 39 0 chr6 49219212 49219542 -140060012 + MER7A DNA MER2_type 6 346 0 361 141 47 156 chr6 49220283 49220411 -140059143 - MIR SINE MIR -70 192 79 317 257 235 0 chr6 49220469 49220605 -140058949 + MIR SINE MIR 84 251 -11 342 67 0 0 chr6 49221789 49221834 -140057720 + (CA)n Simple_repeat Simple_repeat 2 46 0 2356 92 3 0 chr6 49221848 49222152 -140057402 + AluSg SINE Alu 1 305 -5 276 274 123 19 chr6 49222868 49222974 -140056580 + L1ME LINE L1 5479 5595 -526 238 209 0 0 chr6 49223018 49223061 -140056493 + L1ME LINE L1 5671 5713 -457 292 232 70 42 chr6 49223167 49223309 -140056245 - LTR16A1 LTR ERVL -311 146 1 438 321 114 0 chr6 49223422 49223668 -140055886 + L1ME3A LINE L1 5605 5878 -292 683 251 55 58 chr6 49223980 49224255 -140055299 - L2 LINE L2 -740 2574 2301 469 246 71 8 chr6 49224250 49224376 -140055178 + L2 LINE L2 3179 3312 -1 * 291 294 0 0 chr6 49224400 49224485 -140055069 - L2 LINE L2 -1018 2296 2212 212 333 79 44 chr6 49226107 49226335 -140053219 + L2 LINE L2 2999 3234 -79 904 248 42 80 chr6 49228839 49229308 -140050246 + L2 LINE L2 2697 3149 -164 2390 77 0 7 chr6 49229308 49229605 -140049949 - AluSp SINE Alu -18 295 1 904 248 42 80 chr6 49229605 49229759 -140049795 + L2 LINE L2 3149 3307 -6 333 276 63 0 chr6 49230175 49230302 -140049252 - L1MC4 LINE L1 0 8042 7908 587 244 138 33 chr6 49230305 49231977 -140047577 - L1MC4 LINE L1 -743 5797 5260 1839 114 15 0 chr6 49231977 49232240 -140047314 - AluSx SINE Alu -4 308 42 587 244 138 33 chr6 49232240 49232307 -140047247 - L1MC4 LINE L1 -1280 5260 5201 615 292 99 30 chr6 49232450 49232854 -140046700 - L1MC4 LINE L1 -2191 4349 3918 343 291 79 33 chr6 49233615 49233856 -140045698 + L2 LINE L2 2143 2394 -920 2195 127 7 0 chr6 49235088 49235395 -140044159 - AluSx SINE Alu -3 309 1 24 77 0 0 chr6 49237143 49237195 -140042359 + AT_rich Low_complexity Low_complexity 1 52 0 246 32 0 0 chr6 49237256 49237287 -140042267 + (CA)n Simple_repeat Simple_repeat 2 32 0 307 294 72 116 chr6 49237443 49237709 -140041845 - L2 LINE L2 -4 3268 3017 3360 120 86 12 chr6 49237709 49238200 -140041354 + MER1A DNA MER1_type 1 527 0 307 294 72 116 chr6 49238200 49238253 -140041301 - L2 LINE L2 -255 3017 2963 237 354 21 59 chr6 49238757 49238994 -140040560 - L2 LINE L2 -214 3058 2831 21 0 0 31 chr6 49241414 49241432 -140038122 + AT_rich Low_complexity Low_complexity 1 19 -12 762 191 0 23 chr6 49241432 49241563 -140037991 + FLAM_A SINE Alu 1 128 -5 21 0 0 31 chr6 49241563 49241576 -140037978 + AT_rich Low_complexity Low_complexity 19 31 0 3439 196 56 35 chr6 49241872 49242467 -140037087 - L1MB7 LINE L1 0 6184 5563 1760 153 33 4 chr6 49242467 49242765 -140036789 + AluSx SINE Alu 1 306 0 3439 196 56 35 chr6 49242765 49243007 -140036547 - L1MB7 LINE L1 -621 5563 5328 606 288 39 4 chr6 49243013 49243246 -140036308 - L1MC4 LINE L1 -4619 1921 1681 1539 238 66 14 chr6 49243252 49243614 -140035940 + MLT1E2 LTR MaLR 235 615 -11 1316 297 79 54 chr6 49243619 49244548 -140035006 - L1MC4 LINE L1 -5164 1366 415 466 323 95 17 chr6 49244872 49245230 -140034324 + L2 LINE L2 2702 3085 -187 195 155 28 14 chr6 49245230 49245301 -140034253 + (CA)n Simple_repeat Simple_repeat 1 72 0 299 226 314 0 chr6 49245489 49245591 -140033963 + L2 LINE L2 3180 3313 0 269 321 0 13 chr6 49246909 49247066 -140032488 - MIR SINE MIR -15 247 15 321 323 183 36 chr6 49247291 49247570 -140031984 + L3 LINE CR1 1235 1554 -23 191 61 30 0 chr6 49248086 49248119 -140031435 + (TA)n Simple_repeat Simple_repeat 1 34 0 * 234 150 0 0 chr6 49248118 49248158 -140031396 + (CA)n Simple_repeat Simple_repeat 2 41 0 396 0 0 0 chr6 49248158 49248202 -140031352 + (TATG)n Simple_repeat Simple_repeat 2 45 0 249 261 43 0 chr6 49248568 49248637 -140030917 + MIR3 SINE MIR 134 205 -3 1074 268 20 48 chr6 49250710 49250907 -140028647 + L1ME3A LINE L1 5820 6021 -149 1917 168 3 0 chr6 49250907 49251192 -140028362 + AluJb SINE Alu 1 286 -26 312 27 0 0 chr6 49251192 49251229 -140028325 + (GA)n Simple_repeat Simple_repeat 2 38 0 1074 268 20 48 chr6 49251229 49251381 -140028173 + L1ME3A LINE L1 6019 6160 -10 483 300 158 58 chr6 49251743 49252143 -140027411 - L2 LINE L2 -3 3269 2830 1878 109 154 21 chr6 49252725 49253056 -140026498 + THE1C LTR MaLR 1 375 0 2637 46 0 0 chr6 49253607 49253910 -140025644 + AluY SINE Alu 1 303 -8 717 293 131 72 chr6 49256064 49256982 -140022572 - L2 LINE L2 -1253 2061 1090 211 281 150 31 chr6 49257240 49257400 -140022154 - L2 LINE L2 -2924 390 212 463 220 37 9 chr6 49257716 49257825 -140021729 + MER5B DNA MER1_type 1 112 -66 4791 70 25 0 chr6 49257855 49258451 -140021103 - L1PA8 LINE L1 -2 6170 5560 280 71 48 0 chr6 49258452 49258494 -140021060 + L1PA8 LINE L1 5512 5555 -576 545 180 143 62 chr6 49258562 49258723 -140020831 + MER5A DNA MER1_type 16 189 0 * 565 216 78 46 chr6 49258687 49258840 -140020714 - MER5B DNA MER1_type -2 176 19 210 37 0 0 chr6 49259889 49259916 -140019638 + (CCCTG)n Simple_repeat Simple_repeat 3 29 0 2381 74 0 10 chr6 49260552 49260862 -140018692 + AluY SINE Alu 5 311 0 811 161 0 0 chr6 49261883 49262013 -140017541 + FLAM_A SINE Alu 1 130 -3 293 380 88 12 chr6 49262466 49262805 -140016749 + L2 LINE L2 2907 3271 -1 1746 169 29 0 chr6 49264276 49264398 -140015156 + AluJb SINE Alu 1 118 -185 207 0 0 0 chr6 49264398 49264421 -140015133 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1746 169 29 0 chr6 49264421 49264593 -140014961 + AluJb SINE Alu 118 303 0 265 326 75 38 chr6 49264731 49264883 -140014671 + MIR SINE MIR 14 184 -78 2153 103 13 19 chr6 49264883 49265193 -140014361 + AluSx SINE Alu 1 308 -4 265 326 75 38 chr6 49265193 49265262 -140014292 + MIR SINE MIR 184 249 -13 299 226 16 0 chr6 49265279 49265341 -140014213 + MIR3 SINE MIR 111 173 -35 712 199 65 0 chr6 49265342 49265579 -140013975 - MLT1C-int LTR MaLR -994 377 1 1402 205 114 28 chr6 49265579 49266009 -140013545 - MLT1C LTR MaLR 0 467 1 196 246 43 109 chr6 49266298 49266436 -140013118 - L3b LINE CR1 -251 1332 1204 215 77 0 26 chr6 49268294 49268333 -140011221 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2401 208 37 34 chr6 49270508 49271162 -140008392 + L1ME1 LINE L1 5506 6161 -5 952 201 11 16 chr6 49271940 49272129 -140007425 - MIR SINE MIR -29 233 46 679 271 42 0 chr6 49273043 49273235 -140006319 - LTR16A LTR ERVL 0 450 251 195 129 0 0 chr6 49274680 49274711 -140004843 + (CCCCCT)n Simple_repeat Simple_repeat 1 31 0 297 338 60 14 chr6 49276191 49276407 -140003147 - L2 LINE L2 -181 3091 2866 352 314 52 36 chr6 49276480 49276691 -140002863 - MIR SINE MIR -40 222 10 763 279 229 3 chr6 49279053 49279368 -140000186 - MLT1J2 LTR MaLR -7 443 58 1702 192 131 10 chr6 49279369 49279780 -139999774 + MLT1C LTR MaLR 3 463 -4 200 365 0 0 chr6 49280112 49280205 -139999349 + MIR SINE MIR 59 150 -63 199 256 198 0 chr6 49280742 49280828 -139998726 + MIR SINE MIR 50 152 -110 2221 110 14 0 chr6 49280831 49281123 -139998431 + AluSq SINE Alu 1 296 -17 433 253 0 0 chr6 49281354 49281449 -139998105 + MIR SINE MIR 168 262 0 2222 134 0 0 chr6 49281716 49282021 -139997533 + AluSx SINE Alu 1 305 -7 252 288 12 12 chr6 49282045 49282125 -139997429 + CT-rich Low_complexity Low_complexity 3 82 0 2224 84 38 0 chr6 49282144 49282431 -139997123 + AluSg SINE Alu 1 298 -12 250 254 0 0 chr6 49282848 49282911 -139996643 + MIR SINE MIR 92 154 -108 1088 114 0 0 chr6 49283003 49283152 -139996402 - AluSg/x SINE Alu -9 303 155 1007 237 141 25 chr6 49283392 49283451 -139996103 - LTR16C LTR ERVL 0 491 440 2500 86 3 3 chr6 49283451 49283764 -139995790 - AluSp SINE Alu 0 313 1 1007 237 141 25 chr6 49283764 49284058 -139995496 - LTR16C LTR ERVL -51 440 97 467 246 75 37 chr6 49284133 49284267 -139995287 + L2 LINE L2 3172 3310 -3 1391 231 83 29 chr6 49284408 49284853 -139994701 + MLT1J LTR MaLR 42 510 -1 235 220 0 0 chr6 49285719 49285769 -139993785 + MIR SINE MIR 81 130 -78 183 361 12 12 chr6 49288114 49288197 -139991357 - MIR SINE MIR -60 148 66 277 313 90 21 chr6 49288484 49288628 -139990926 + MIR SINE MIR 34 187 -75 309 308 0 0 chr6 49289201 49289344 -139990210 + (TG)n Simple_repeat Simple_repeat 2 144 0 186 43 0 0 chr6 49289601 49289624 -139989930 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 273 275 101 18 chr6 49290147 49290256 -139989298 - MIR SINE MIR -71 137 20 303 324 132 18 chr6 49290907 49291126 -139988428 - MIR SINE MIR -12 250 7 224 196 76 54 chr6 49294319 49294411 -139985143 + MIR SINE MIR 14 107 -155 401 223 223 0 chr6 49294489 49294637 -139984917 - MIR SINE MIR -14 248 68 191 263 0 0 chr6 49294670 49294708 -139984846 + MIR SINE MIR 218 255 -7 414 57 0 0 chr6 49295980 49296033 -139983521 + (CAT)n Simple_repeat Simple_repeat 2 54 0 536 265 224 0 chr6 49296033 49296203 -139983351 - MIR SINE MIR -6 256 49 601 227 113 16 chr6 49296520 49296714 -139982840 - MIR SINE MIR -43 219 7 307 244 39 0 chr6 49296863 49296941 -139982613 + MIR SINE MIR 63 143 -119 999 258 96 27 chr6 49297651 49298100 -139981454 - LTR33 LTR ERVL 0 521 42 504 269 0 44 chr6 49299064 49299224 -139980330 - MIR3 SINE MIR -60 148 1 240 197 0 66 chr6 49299290 49299351 -139980203 + MIR SINE MIR 89 145 -117 494 282 31 18 chr6 49300066 49300229 -139979325 + MIR SINE MIR 31 195 -67 180 311 0 0 chr6 49300324 49300369 -139979185 - L2 LINE L2 -27 3286 3242 491 31 15 0 chr6 49301235 49301300 -139978254 + (CA)n Simple_repeat Simple_repeat 2 67 0 2216 127 0 10 chr6 49301335 49301642 -139977912 - AluSx SINE Alu -8 304 1 190 281 31 31 chr6 49302431 49302495 -139977059 + L2 LINE L2 3127 3190 -82 183 42 0 0 chr6 49302875 49302899 -139976655 + (TG)n Simple_repeat Simple_repeat 2 25 0 221 211 70 35 chr6 49304270 49304327 -139975227 + L2 LINE L2 3251 3309 -4 1719 156 27 48 chr6 49304620 49304993 -139974561 - MLT1A1 LTR MaLR 0 365 1 1750 132 10 36 chr6 49304993 49305297 -139974257 - MLT1A1-int LTR MaLR 0 1735 1440 434 261 19 2 chr6 49305304 49305419 -139974135 + FLAM_C SINE Alu 9 109 -24 5702 190 102 57 chr6 49305469 49306689 -139972865 - MLT1A2-int LTR MaLR -280 1455 163 2483 60 0 17 chr6 49306689 49306990 -139972564 + AluY SINE Alu 1 296 -15 5702 190 102 57 chr6 49306990 49307161 -139972393 - MLT1A2-int LTR MaLR -1572 163 1 1298 176 39 132 chr6 49307161 49307571 -139971983 - MLT1A2 LTR MaLR 0 374 3 928 288 104 11 chr6 49307587 49308272 -139971282 - L1ME3 LINE L1 -278 5884 5129 2369 113 0 0 chr6 49308402 49308713 -139970841 + AluY SINE Alu 1 311 0 441 322 83 9 chr6 49308721 49309140 -139970414 - L1ME3 LINE L1 -1053 5093 4644 898 322 86 16 chr6 49309166 49309793 -139969761 - L1ME3 LINE L1 -1562 4584 3914 184 244 173 8 chr6 49309996 49310123 -139969431 - L2 LINE L2 -223 3049 2902 180 247 93 10 chr6 49310403 49310500 -139969054 - L2 LINE L2 -30 3242 3138 448 224 73 107 chr6 49310604 49310809 -139968745 + MIR SINE MIR 20 217 -45 206 169 299 0 chr6 49312333 49312410 -139967144 - MIR SINE MIR -76 132 33 205 213 98 33 chr6 49313608 49313669 -139965885 - L2 LINE L2 -2 3270 3206 644 213 7 7 chr6 49314361 49314502 -139965052 - MLT1F LTR MaLR 0 567 427 1307 227 40 54 chr6 49314613 49315040 -139964514 - MLT1F LTR MaLR -121 421 1 314 288 81 18 chr6 49317124 49317235 -139962319 - MIR SINE MIR -73 135 18 325 248 128 0 chr6 49317304 49317421 -139962133 - MIR SINE MIR -27 235 104 215 239 0 90 chr6 49318508 49318575 -139960979 - MIR SINE MIR -114 148 88 237 139 0 0 chr6 49318593 49318629 -139960925 + U2 snRNA snRNA 1 36 -152 425 315 39 8 chr6 49319078 49319205 -139960349 + MIR SINE MIR 20 150 -112 198 360 23 0 chr6 49319634 49319720 -139959834 - MIR SINE MIR -114 148 61 458 204 28 0 chr6 49320904 49321012 -139958542 + MIR SINE MIR 37 147 -61 484 242 39 8 chr6 49321278 49321406 -139958148 - L2 LINE L2 -5 3267 3136 514 254 239 10 chr6 49321448 49321649 -139957905 + MIR SINE MIR 13 259 -3 210 182 73 36 chr6 49322988 49323043 -139956511 - L3 LINE CR1 -4 1573 1517 366 23 0 0 chr6 49323504 49323547 -139956007 + (CA)n Simple_repeat Simple_repeat 2 44 0 326 265 116 48 chr6 49326144 49326291 -139953263 - MIR3 SINE MIR -21 187 31 246 156 0 0 chr6 49326946 49326991 -139952563 + (TG)n Simple_repeat Simple_repeat 2 46 0 180 77 0 0 chr6 49329887 49329913 -139949641 + (TCTCTG)n Simple_repeat Simple_repeat 5 30 0 2274 81 3 0 chr6 49331267 49331562 -139947992 + AluSc SINE Alu 3 298 -11 582 240 92 28 chr6 49332762 49332979 -139946575 - L2 LINE L2 -191 3122 2892 859 194 88 0 chr6 49332984 49333154 -139946400 + MER58A DNA MER1_type 37 221 -3 569 212 151 0 chr6 49333628 49333783 -139945771 + MER5A DNA MER1_type 4 185 -4 482 238 64 29 chr6 49333869 49334041 -139945513 + L1ME4a LINE L1 5707 5884 -237 423 271 78 21 chr6 49334052 49334244 -139945310 + HAL1b LINE L1 719 921 -427 292 251 49 32 chr6 49334591 49334871 -139944683 + L1MC4a LINE L1 2147 2433 -3713 582 287 70 76 chr6 49334913 49335205 -139944349 + L1MC4a LINE L1 3688 3980 -2166 2131 120 3 0 chr6 49335205 49335513 -139944041 - AluSx SINE Alu -3 309 1 582 287 70 76 chr6 49335513 49335733 -139943821 + L1MC4a LINE L1 3980 4200 -1946 1773 154 0 7 chr6 49335733 49336053 -139943501 + AluSx SINE Alu 1 318 0 582 287 70 76 chr6 49336053 49336885 -139942669 + L1MC4a LINE L1 4200 5026 -1120 1706 248 85 15 chr6 49337040 49337637 -139941917 + L1MC4a LINE L1 5254 5892 -1916 481 350 49 63 chr6 49337646 49338077 -139941477 + L2 LINE L2 2827 3251 -21 180 111 0 0 chr6 49338077 49338104 -139941450 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 1859 130 62 7 chr6 49338162 49338454 -139941100 + AluSx SINE Alu 1 308 -4 234 170 0 19 chr6 49338690 49338743 -139940811 + L1ME4a LINE L1 6061 6112 -9 529 186 99 64 chr6 49338970 49339142 -139940412 - MER5A DNA MER1_type 0 189 12 324 365 183 3 chr6 49340288 49340600 -139938954 + L3b LINE CR1 1202 1569 -14 1245 71 65 0 chr6 49341816 49341986 -139937568 + MER1B DNA MER1_type 159 339 0 1826 140 4 0 chr6 49343600 49343879 -139935675 + AluSx SINE Alu 18 297 -15 305 364 74 0 chr6 49343966 49344142 -139935412 + L2 LINE L2 2618 2806 -508 544 270 118 5 chr6 49344239 49344443 -139935111 + MER112 DNA MER1_type 6 232 -28 200 254 124 89 chr6 49345138 49345307 -139934247 - L2 LINE L2 -419 2895 2721 457 234 154 53 chr6 49345500 49345688 -139933866 - MIR SINE MIR -26 236 30 579 240 62 159 chr6 49345934 49346400 -139933154 + L2 LINE L2 2893 3313 0 486 190 20 0 chr6 49346871 49346971 -139932583 - L1MA4A LINE L1 -456 5847 5746 491 284 24 47 chr6 49346972 49347183 -139932371 - L1MA5A LINE L1 -346 5951 5746 692 176 0 15 chr6 49347190 49347326 -139932228 - L1MA5 LINE L1 -421 5879 5746 442 281 0 0 chr6 49347324 49347438 -139932116 - L1MA5 LINE L1 -441 5859 5746 * 450 252 0 9 chr6 49347436 49347551 -139932003 - L1MA5 LINE L1 -441 5859 5746 393 261 46 8 chr6 49347555 49347684 -139931870 - L1MA4A LINE L1 -366 5817 5722 1015 243 48 11 chr6 49350365 49350637 -139928917 + L1MB7 LINE L1 5903 6184 0 27 0 0 0 chr6 49350639 49350666 -139928888 + AT_rich Low_complexity Low_complexity 1 27 0 588 260 42 0 chr6 49353060 49353223 -139926331 - L1ME3 LINE L1 -9 6161 5983 1680 231 83 123 chr6 49353365 49354225 -139925329 - L2 LINE L2 0 3313 2503 893 126 0 15 chr6 49354225 49354360 -139925194 + FLAM_C SINE Alu 1 133 0 1680 231 83 123 chr6 49354360 49354722 -139924832 - L2 LINE L2 -810 2503 2128 613 239 129 10 chr6 49354957 49355158 -139924396 - LTR33 LTR ERVL -5 516 292 295 159 43 14 chr6 49355181 49355250 -139924304 - LTR33 LTR ERVL -446 75 5 305 297 27 45 chr6 49355417 49355528 -139924026 + L3 LINE CR1 337 445 -1132 2222 121 111 30 chr6 49355648 49355828 -139923726 + MSTA LTR MaLR 1 165 -263 2001 138 0 0 chr6 49355828 49356124 -139923430 + AluSx SINE Alu 1 296 -16 2222 121 111 30 chr6 49356124 49356339 -139923215 + MSTA LTR MaLR 165 428 0 285 273 0 34 chr6 49356400 49356488 -139923066 + MLT1H LTR MaLR 91 175 -374 284 252 23 69 chr6 49356650 49356781 -139922773 + MLT1H LTR MaLR 425 549 0 599 278 48 53 chr6 49356851 49357225 -139922329 - L1M4 LINE L1 -2264 3882 3511 262 300 154 90 chr6 49357250 49357698 -139921856 + L3 LINE CR1 514 932 -645 2057 112 7 3 chr6 49357698 49357992 -139921562 - AluSx SINE Alu -17 295 1 262 300 154 90 chr6 49357992 49358140 -139921414 + L3 LINE CR1 932 1069 -508 1142 177 48 0 chr6 49358140 49358349 -139921205 - MER20 DNA MER1_type 0 219 1 262 300 154 90 chr6 49358349 49358470 -139921084 + L3 LINE CR1 1069 1278 -299 6265 102 7 0 chr6 49358470 49359335 -139920219 + HERVH LTR ERV1 5147 6017 -1696 3751 97 31 9 chr6 49359327 49359872 -139919682 + HERVH LTR ERV1 7157 7713 0 * 836 189 85 41 chr6 49359872 49360224 -139919330 + LTR7 LTR ERV1 1 410 -40 674 267 108 17 chr6 49360239 49360479 -139919075 + L3 LINE CR1 1263 1524 -53 1514 180 13 17 chr6 49360651 49360951 -139918603 - AluJo SINE Alu -13 299 1 1461 281 38 19 chr6 49360970 49361343 -139918211 + LTR16C LTR ERVL 103 482 -9 646 278 108 5 chr6 49361700 49361894 -139917660 - L2 LINE L2 -3 3269 3056 193 162 0 0 chr6 49361904 49361941 -139917613 - MIR SINE MIR -68 140 104 204 125 0 0 chr6 49362784 49362816 -139916738 + (TA)n Simple_repeat Simple_repeat 2 33 0 505 259 228 0 chr6 49362870 49363059 -139916495 - MIR SINE MIR 0 262 31 251 340 53 0 chr6 49363408 49363502 -139916052 + MIR SINE MIR 49 147 -115 2124 95 3 0 chr6 49363657 49363989 -139915565 + AluSx SINE Alu 1 333 0 2196 84 0 7 chr6 49363989 49364308 -139915246 + AluSq SINE Alu 1 317 0 2421 128 52 28 chr6 49365942 49366364 -139913190 - MSTB1 LTR MaLR 0 432 1 248 343 52 47 chr6 49366595 49366767 -139912787 - MER5B DNA MER1_type -5 173 1 219 257 89 59 chr6 49367250 49367351 -139912203 - MIR SINE MIR -52 210 107 1936 121 6 22 chr6 49367428 49367743 -139911811 + AluSx SINE Alu 1 310 -2 2518 119 58 23 chr6 49368850 49369285 -139910269 - LTR7 LTR ERV1 0 450 1 2877 75 43 30 chr6 49369285 49369724 -139909830 - HERVH LTR ERV1 0 7713 7269 * 11017 118 12 37 chr6 49369710 49372223 -139907331 - HERVH LTR ERV1 -2699 5014 2043 3943 143 15 28 chr6 49372213 49372900 -139906654 - HERVH LTR ERV1 -6235 1478 801 * 1982 198 46 27 chr6 49372927 49373409 -139906145 - HERVH LTR ERV1 -7254 459 1 2318 120 45 42 chr6 49373409 49373858 -139905696 - LTR7 LTR ERV1 0 450 1 229 231 0 19 chr6 49373921 49373973 -139905581 + MIR3 SINE MIR 121 171 -37 719 299 14 0 chr6 49374025 49374239 -139905315 - MER20 DNA MER1_type 0 219 3 218 288 159 105 chr6 49374331 49374588 -139904966 - L2 LINE L2 -86 3186 2916 24 0 0 0 chr6 49374976 49375000 -139904554 + AT_rich Low_complexity Low_complexity 1 24 0 471 252 53 15 chr6 49375135 49375266 -139904288 + MIR SINE MIR 7 142 -120 1401 233 106 67 chr6 49375589 49376250 -139903304 + HAL1 LINE L1 590 1276 -1231 1251 213 58 38 chr6 49376482 49376773 -139902781 + AluJb SINE Alu 1 297 -5 226 174 87 120 chr6 49376793 49376885 -139902669 + L1ME2 LINE L1 5961 6049 -115 775 230 50 10 chr6 49377330 49377530 -139902024 + LTR33 LTR ERVL 4 211 -310 405 264 16 8 chr6 49377524 49377653 -139901901 + LTR33 LTR ERVL 392 521 0 * 424 316 83 15 chr6 49378618 49378838 -139900716 + MIR SINE MIR 30 262 0 181 284 35 85 chr6 49378906 49379047 -139900507 + MIR3 SINE MIR 48 181 -27 440 289 64 21 chr6 49379101 49379288 -139900266 + MARNA DNA Mariner 39 233 -353 24 0 0 0 chr6 49379313 49379337 -139900217 + AT_rich Low_complexity Low_complexity 1 24 0 2178 103 7 0 chr6 49379561 49379863 -139899691 + AluSc SINE Alu 1 304 -5 225 0 0 0 chr6 49379881 49379906 -139899648 + (CAGA)n Simple_repeat Simple_repeat 1 25 0 492 233 17 25 chr6 49379978 49380098 -139899456 + MARNA DNA Mariner 290 408 -178 356 244 100 56 chr6 49380264 49380424 -139899130 + MIR SINE MIR 30 196 -66 338 262 24 0 chr6 49381058 49381142 -139898412 + MER45B DNA AcHobo 1 86 -954 * 1122 155 28 114 chr6 49381136 49381234 -139898320 + MER45B DNA AcHobo 776 881 -700 1885 144 53 44 chr6 49381234 49381595 -139897959 - THE1B LTR MaLR 0 364 1 1122 155 28 114 chr6 49381595 49381610 -139897944 + MER45B DNA AcHobo 881 896 -685 669 202 0 0 chr6 49381610 49381724 -139897830 - FLAM_A SINE Alu -19 114 1 1122 155 28 114 chr6 49381724 49381899 -139897655 + MER45B DNA AcHobo 896 1040 0 574 193 6 117 chr6 49382547 49382718 -139896836 - MER103 DNA DNA -1 165 14 517 251 63 58 chr6 49382787 49382978 -139896576 + MIR SINE MIR 17 208 -54 507 299 38 0 chr6 49384206 49384363 -139895191 - MIR SINE MIR -13 249 87 1764 166 65 91 chr6 49384363 49384649 -139894905 + MLT2D LTR ERVL 1 274 -140 876 133 0 30 chr6 49384649 49384784 -139894770 - FLAM_C SINE Alu -1 132 2 1764 166 65 91 chr6 49384784 49384914 -139894640 + MLT2D LTR ERVL 274 406 -8 236 286 52 0 chr6 49385183 49385260 -139894294 - L2 LINE L2 -6 3266 3186 1926 130 3 7 chr6 49385594 49385908 -139893646 - AluSx SINE Alu 0 312 4 1120 248 42 39 chr6 49386289 49386624 -139892930 + L1MEc LINE L1 36 371 -6025 333 141 0 0 chr6 49386625 49386696 -139892858 + (TC)n Simple_repeat Simple_repeat 2 72 0 234 0 0 0 chr6 49386696 49386722 -139892832 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 294 50 0 0 chr6 49386721 49386761 -139892793 + (GA)n Simple_repeat Simple_repeat 2 41 0 465 235 42 54 chr6 49386767 49386933 -139892621 + L1MEc LINE L1 385 548 -5848 1130 204 25 60 chr6 49386936 49387289 -139892265 + L1ME1 LINE L1 5824 6164 -2 749 321 62 25 chr6 49387311 49387831 -139891723 + HAL1b LINE L1 120 658 -690 543 261 63 36 chr6 49388287 49388620 -139890934 + L1MC4 LINE L1 7701 8042 0 2064 122 7 0 chr6 49388839 49389135 -139890419 - AluSg SINE Alu -12 298 1 370 191 15 0 chr6 49390103 49390171 -139889383 - MER45B DNA AcHobo 0 1040 972 1150 163 0 56 chr6 49390172 49390405 -139889149 + AluJb SINE Alu 87 306 -6 3169 181 32 55 chr6 49390405 49390583 -139888971 - MER45B DNA AcHobo -619 962 781 1560 171 25 4 chr6 49390583 49390863 -139888691 - AluJo SINE Alu -26 286 1 3169 181 32 55 chr6 49390863 49391413 -139888141 - MER45B DNA AcHobo -800 781 251 706 182 30 0 chr6 49391419 49391551 -139888003 - MER45B DNA AcHobo -904 136 1 195 42 0 0 chr6 49392180 49392204 -139887350 + (T)n Simple_repeat Simple_repeat 1 24 0 1914 144 3 6 chr6 49392343 49392655 -139886899 - AluJb SINE Alu -1 311 1 404 299 36 7 chr6 49393169 49393306 -139886248 + MER5B DNA MER1_type 38 178 0 323 228 219 26 chr6 49393306 49393420 -139886134 - MIR3 SINE MIR -48 160 25 1938 142 3 16 chr6 49393652 49393961 -139885593 - AluJb SINE Alu -7 305 1 409 245 20 0 chr6 49394691 49394789 -139884765 - MIR3 SINE MIR 0 208 109 610 260 107 6 chr6 49394894 49395071 -139884483 - MER91A DNA MER1_type -1 195 1 2168 57 28 0 chr6 49395855 49396137 -139883417 + AluY SINE Alu 2 291 -20 227 274 0 0 chr6 49396378 49396429 -139883125 - Charlie4 DNA MER1_type -1910 51 1 1143 30 0 0 chr6 49396687 49396819 -139882735 + AluSp SINE Alu 1 132 -181 2265 75 10 0 chr6 49396821 49397116 -139882438 + AluSp SINE Alu 1 298 -15 2648 204 52 51 chr6 49398592 49398882 -139880672 + L1ME1 LINE L1 4615 4903 -1263 915 131 8 0 chr6 49398882 49399012 -139880542 + FLAM_C SINE Alu 1 131 -2 2648 204 52 51 chr6 49399012 49399430 -139880124 + L1ME1 LINE L1 4903 5319 -847 2367 90 0 0 chr6 49399430 49399741 -139879813 + AluY SINE Alu 1 311 0 2648 204 52 51 chr6 49399741 49400234 -139879320 + L1ME1 LINE L1 5319 5819 -347 2015 127 0 0 chr6 49400234 49400564 -139878990 + AluSx SINE Alu 1 330 0 2648 204 52 51 chr6 49400564 49400702 -139878852 + L1ME1 LINE L1 5819 5955 -211 1372 217 129 35 chr6 49400707 49401164 -139878390 + MLT1D LTR MaLR 6 505 0 226 69 0 0 chr6 49401164 49401193 -139878361 + L1ME1 LINE L1 5951 5979 -187 330 251 9 25 chr6 49401207 49401332 -139878222 + L1ME1 LINE L1 6047 6159 -20 198 67 0 0 chr6 49401332 49401348 -139878206 + (CAAT)n Simple_repeat Simple_repeat 3 21 -11 2003 133 3 0 chr6 49401348 49401642 -139877912 + AluSx SINE Alu 1 295 -17 198 67 0 0 chr6 49401642 49401655 -139877899 + (CAAT)n Simple_repeat Simple_repeat 20 32 0 194 265 44 73 chr6 49401786 49401922 -139877632 - L2 LINE L2 -897 2417 2286 427 217 174 7 chr6 49402010 49402148 -139877406 + MIR SINE MIR 75 235 -27 956 118 35 98 chr6 49402373 49402576 -139876978 - MLT1C LTR MaLR 0 467 278 874 135 12 82 chr6 49402576 49402727 -139876827 + MLT1D-int LTR MaLR 22 182 -1189 1573 139 23 62 chr6 49402727 49403036 -139876518 - AluSq SINE Alu -15 298 2 874 135 12 82 chr6 49403036 49403127 -139876427 + MLT1D-int LTR MaLR 182 357 -1014 383 242 68 71 chr6 49403515 49403671 -139875883 - MIR SINE MIR -63 145 29 319 330 68 0 chr6 49404411 49404529 -139875025 - L2 LINE L2 -2 3270 3145 381 113 198 10 chr6 49407805 49407891 -139871663 + MER5A DNA MER1_type 4 109 -80 425 284 92 40 chr6 49408095 49408400 -139871154 - L2 LINE L2 0 3272 2858 207 218 282 51 chr6 49408536 49408614 -139870940 + MIR SINE MIR 47 142 -66 1425 250 163 9 chr6 49408714 49409138 -139870416 - MLT1J LTR MaLR -22 489 1 753 188 119 35 chr6 49409803 49410005 -139869549 - MER20 DNA MER1_type 0 219 1 189 147 0 0 chr6 49410061 49410095 -139869459 + (GA)n Simple_repeat Simple_repeat 1 34 0 218 336 18 9 chr6 49410100 49410210 -139869344 + GA-rich Low_complexity Low_complexity 1 111 0 440 236 144 92 chr6 49410617 49411028 -139868526 + HAL1 LINE L1 43 474 -2033 416 259 92 35 chr6 49411037 49411211 -139868343 + HAL1 LINE L1 540 723 -1784 2215 145 23 41 chr6 49411264 49411444 -139868110 + Tigger2a DNA MER2_type 1 183 -2525 1997 107 45 0 chr6 49411444 49411733 -139867821 + AluSg1 SINE Alu 1 302 -7 2215 145 23 41 chr6 49411733 49411944 -139867610 + Tigger2a DNA MER2_type 183 385 -49 239 125 0 0 chr6 49412058 49412090 -139867464 + Tigger2a DNA MER2_type 413 444 0 565 277 64 96 chr6 49412093 49412229 -139867325 + HAL1 LINE L1 810 934 -1573 1863 113 0 0 chr6 49412229 49412494 -139867060 + AluY SINE Alu 38 302 -9 565 277 64 96 chr6 49412494 49412639 -139866915 + HAL1 LINE L1 934 1082 -1425 2247 88 14 0 chr6 49412639 49412936 -139866618 + AluSx SINE Alu 1 301 -11 1903 104 83 4 chr6 49412966 49413244 -139866310 + AluSq SINE Alu 1 300 -13 273 249 102 40 chr6 49413285 49413502 -139866052 + L1MC4 LINE L1 7527 7710 -98 618 110 0 0 chr6 49413525 49413616 -139865938 + L1PB3 LINE L1 6064 6154 0 1155 163 92 24 chr6 49413718 49414012 -139865542 + MER33 DNA MER1_type 10 323 -1 2538 268 85 34 chr6 49414321 49415455 -139864099 + HAL1 LINE L1 1316 2507 0 223 338 15 0 chr6 49415916 49415984 -139863570 - L3 LINE CR1 -84 1493 1425 183 259 93 0 chr6 49416020 49416074 -139863480 + L2 LINE L2 2904 2962 -310 471 194 110 110 chr6 49416197 49416352 -139863202 + MSTC LTR MaLR 1 155 -277 226 359 0 0 chr6 49416921 49416985 -139862569 - L2 LINE L2 0 3313 3250 509 267 16 84 chr6 49417021 49417212 -139862342 + MER5B DNA MER1_type 1 178 0 313 214 214 48 chr6 49417212 49417339 -139862215 - MIR3 SINE MIR -40 168 18 450 309 73 0 chr6 49418173 49418338 -139861216 + LTR16B LTR ERVL 124 300 -164 301 275 0 12 chr6 49418386 49418466 -139861088 + LTR16B LTR ERVL 381 459 -5 450 49 0 0 chr6 49418544 49418605 -139860949 + (CA)n Simple_repeat Simple_repeat 1 61 0 188 250 0 0 chr6 49418660 49418708 -139860846 + MIR SINE MIR 201 248 -14 1814 219 44 30 chr6 49419519 49419949 -139859605 + MER63B DNA MER1_type 1 436 0 274 242 0 16 chr6 49420350 49420412 -139859142 + MER5A DNA MER1_type 71 131 -58 286 258 346 0 chr6 49420577 49420759 -139858795 + MIR SINE MIR 14 258 -4 566 204 121 0 chr6 49421149 49421281 -139858273 - MLT1G1 LTR MaLR 0 595 448 688 243 50 81 chr6 49421321 49421458 -139858096 - MLT1G1 LTR MaLR -284 311 171 1888 87 50 40 chr6 49421458 49421758 -139857796 + AluY SINE Alu 1 303 -8 246 32 0 0 chr6 49421758 49421789 -139857765 + (CA)n Simple_repeat Simple_repeat 2 32 0 688 243 50 81 chr6 49421789 49421971 -139857583 - MLT1G1 LTR MaLR -422 173 1 562 284 82 16 chr6 49421993 49422236 -139857318 + LTR16C LTR ERVL 168 426 -65 189 291 42 91 chr6 49423012 49423297 -139856257 - L2 LINE L2 -182 3090 2820 324 224 40 0 chr6 49423386 49423462 -139856092 - L2 LINE L2 0 3313 3235 295 226 161 16 chr6 49424075 49424199 -139855355 + MIR SINE MIR 67 208 -54 2073 95 14 3 chr6 49424375 49424671 -139854883 + AluSx SINE Alu 1 299 -13 513 237 126 56 chr6 49425744 49425959 -139853595 + MIR SINE MIR 10 239 -23 2010 117 37 3 chr6 49429292 49429591 -139849963 + AluSx SINE Alu 1 309 -3 195 306 0 0 chr6 49432216 49432265 -139847289 + L2 LINE L2 3139 3187 -85 489 226 162 58 chr6 49432347 49432826 -139846728 + MLT1G1 LTR MaLR 1 595 0 389 263 223 23 chr6 49433307 49433482 -139846072 - MIR SINE MIR -34 228 19 785 148 142 24 chr6 49433488 49433657 -139845897 - MER5A DNA MER1_type 0 189 1 1362 325 124 31 chr6 49435113 49436079 -139843475 + L3 LINE CR1 85 1140 -437 330 175 79 0 chr6 49436281 49436344 -139843210 - L2 LINE L2 -37 3276 3209 380 239 18 51 chr6 49436347 49436493 -139843061 + MER20B DNA MER1_type 64 210 -9 441 321 85 18 chr6 49437626 49437850 -139841704 - MIR SINE MIR -13 249 11 2224 98 3 3 chr6 49438505 49438812 -139840742 - AluSx SINE Alu -4 308 2 338 233 200 83 chr6 49439012 49439228 -139840326 - MIR SINE MIR 0 262 19 600 211 23 23 chr6 49439312 49439440 -139840114 + L2 LINE L2 3186 3313 0 265 317 58 19 chr6 49440098 49440202 -139839352 + MIR SINE MIR 34 141 -121 360 237 178 0 chr6 49440936 49441071 -139838483 - MER5B DNA MER1_type 0 178 20 273 292 92 0 chr6 49441555 49441675 -139837879 + MIR3 SINE MIR 45 175 -33 646 251 0 39 chr6 49441775 49441954 -139837600 - MER5B DNA MER1_type -6 172 1 188 267 150 0 chr6 49443298 49443358 -139836196 - MIR SINE MIR -89 173 105 331 297 111 22 chr6 49443938 49444161 -139835393 + MIR SINE MIR 7 250 -12 330 311 219 15 chr6 49444393 49444663 -139834891 + L2 LINE L2 2987 3311 -2 524 194 0 54 chr6 49445740 49445869 -139833685 - L3b LINE CR1 -194 1389 1268 2081 127 0 3 chr6 49446070 49446369 -139833185 + AluSx SINE Alu 1 298 -14 273 288 136 8 chr6 49447868 49447986 -139831568 - L2 LINE L2 -4 3268 3136 534 149 216 0 chr6 49448801 49448935 -139830619 + MER3 DNA MER1_type 2 164 -45 2241 120 0 0 chr6 49448944 49449252 -139830302 + AluSq SINE Alu 1 308 -5 1968 125 0 7 chr6 49449268 49449565 -139829989 + AluSx SINE Alu 1 295 -17 464 174 13 31 chr6 49450261 49450371 -139829183 + MER8 DNA MER2_type 11 117 -122 801 146 0 0 chr6 49450971 49451081 -139828473 + AluSg SINE Alu 2 111 -199 1593 105 0 5 chr6 49451082 49451301 -139828253 + AluSg/x SINE Alu 78 295 -17 303 192 97 35 chr6 49452242 49452367 -139827187 - MIR SINE MIR -89 119 27 2093 95 0 7 chr6 49453264 49453578 -139825976 + AluSx SINE Alu 1 312 0 448 270 125 0 chr6 49453817 49453969 -139825585 + MIR SINE MIR 21 191 -71 2226 89 6 10 chr6 49454101 49454414 -139825140 + AluSp SINE Alu 2 313 0 217 298 160 22 chr6 49454497 49454678 -139824876 - L2 LINE L2 -429 2885 2680 286 266 94 47 chr6 49454814 49454942 -139824612 + MIR3 SINE MIR 66 199 -9 2177 111 0 0 chr6 49455332 49455630 -139823924 - AluSg SINE Alu -12 298 1 221 185 19 37 chr6 49456245 49456299 -139823255 + L2 LINE L2 3255 3307 -6 326 161 7 7 chr6 49456744 49456819 -139822735 + Alu SINE Alu 247 302 0 197 275 84 70 chr6 49458053 49458195 -139821359 - MIR SINE MIR -21 241 98 460 361 5 23 chr6 49458343 49458562 -139820992 + MIR SINE MIR 48 262 0 292 312 200 6 chr6 49458642 49458812 -139820742 + MIR SINE MIR 50 252 -10 504 202 40 0 chr6 49459659 49459758 -139819796 - L1M3 LINE L1 -684 5650 5548 1279 180 40 15 chr6 49459758 49460027 -139819527 + L1MB2 LINE L1 5892 6170 -1 275 241 0 0 chr6 49460150 49460204 -139819350 - MIR SINE MIR 0 262 209 692 122 0 35 chr6 49461866 49461981 -139817573 - AluJb SINE Alu 0 312 202 279 290 0 0 chr6 49462178 49462240 -139817314 + L2 LINE L2 3242 3303 -10 213 328 224 22 chr6 49462244 49462427 -139817127 + MIR SINE MIR 25 244 -18 207 284 159 0 chr6 49463011 49463099 -139816455 - MIR SINE MIR -118 144 43 184 250 68 0 chr6 49463125 49463169 -139816385 + L2 LINE L2 3210 3256 -16 237 132 0 0 chr6 49467002 49467040 -139812514 + (TTTTC)n Simple_repeat Simple_repeat 5 42 0 2354 78 7 0 chr6 49467052 49467347 -139812207 - AluSx SINE Alu -15 297 1 476 293 107 37 chr6 49467365 49467498 -139812056 + L2 LINE L2 3055 3177 -136 405 0 0 0 chr6 49467498 49467543 -139812011 + (CA)n Simple_repeat Simple_repeat 1 45 0 476 293 107 37 chr6 49467543 49467651 -139811903 + L2 LINE L2 3177 3313 0 192 200 0 0 chr6 49468978 49469028 -139810526 + C-rich Low_complexity Low_complexity 1 50 0 1504 119 105 93 chr6 49469362 49469495 -139810059 + MER4D LTR ERV1 1 131 -772 2065 138 0 3 chr6 49469495 49469792 -139809762 - AluSx SINE Alu -16 296 1 1504 119 105 93 chr6 49469792 49469874 -139809680 + MER4D LTR ERV1 131 211 -692 1549 116 18 13 chr6 49469874 49470098 -139809456 + AluSg/x SINE Alu 84 308 -2 1504 119 105 93 chr6 49470098 49470225 -139809329 + MER4D LTR ERV1 211 348 -555 1250 134 14 5 chr6 49470251 49470603 -139808951 + MER4E LTR ERV1 338 779 0 186 195 39 117 chr6 49470618 49470695 -139808859 - MER5B DNA MER1_type -32 146 76 2651 43 0 0 chr6 49470885 49471189 -139808365 + AluY SINE Alu 1 304 -7 2003 150 7 0 chr6 49471532 49471838 -139807716 - AluSx SINE Alu 0 312 5 1827 163 35 52 chr6 49472042 49472079 -139807475 + L1MB2 LINE L1 5773 5809 -362 1931 113 76 0 chr6 49472079 49472354 -139807200 - AluSx SINE Alu -16 296 1 1827 163 35 52 chr6 49472354 49472722 -139806832 + L1MB2 LINE L1 5809 6171 0 508 191 77 24 chr6 49473748 49473935 -139805619 - MIR SINE MIR -50 212 14 2307 113 0 0 chr6 49474369 49474669 -139804885 - AluSx SINE Alu -12 300 1 647 251 77 0 chr6 49474669 49474876 -139804678 + Charlie4a DNA MER1_type 106 328 -180 801 129 0 0 chr6 49474880 49474996 -139804558 + AluSg/x SINE Alu 175 290 -20 2288 106 3 3 chr6 49475019 49475320 -139804234 - AluSq SINE Alu -12 301 1 274 221 12 12 chr6 49475389 49475475 -139804079 + (TA)n Simple_repeat Simple_repeat 1 86 0 1935 155 0 14 chr6 49475475 49475772 -139803782 - AluSx SINE Alu -19 293 1 362 188 0 119 chr6 49475775 49475812 -139803742 + Charlie4a DNA MER1_type 404 444 -1517 1996 137 14 0 chr6 49475812 49476105 -139803449 + AluSx SINE Alu 1 297 -15 362 188 0 119 chr6 49476105 49476168 -139803386 + Charlie4a DNA MER1_type 444 492 -16 189 306 74 0 chr6 49476256 49476377 -139803177 - L2 LINE L2 -683 2631 2502 559 292 72 5 chr6 49477202 49477397 -139802157 - MIR SINE MIR -15 247 40 447 268 86 62 chr6 49477783 49477992 -139801562 + L1MC5 LINE L1 7201 7414 -547 1273 132 66 0 chr6 49478041 49478238 -139801316 - AluSc SINE Alu 0 309 100 810 133 0 0 chr6 49478316 49478421 -139801133 + AluSg SINE Alu 1 105 -205 1877 97 0 0 chr6 49478422 49478659 -139800895 - AluSg SINE Alu -73 237 1 260 93 93 0 chr6 49478659 49478702 -139800852 - AluJo SINE Alu -166 136 90 769 209 68 56 chr6 49478890 49479139 -139800415 + ORSL DNA AcHobo 1 252 -23 1196 152 18 0 chr6 49479385 49479602 -139799952 + L1MA8 LINE L1 6071 6291 0 2411 92 0 3 chr6 49479608 49479914 -139799640 + AluSx SINE Alu 1 305 -7 233 289 24 48 chr6 49479963 49480046 -139799508 + L2 LINE L2 3145 3225 -47 193 361 77 11 chr6 49480259 49480442 -139799112 - L2 LINE L2 -908 2406 2212 820 186 28 34 chr6 49481130 49481307 -139798247 - FRAM SINE Alu -1 175 1 26 30 0 0 chr6 49481309 49481342 -139798212 + AT_rich Low_complexity Low_complexity 1 33 0 284 158 0 53 chr6 49481382 49481439 -139798115 - AluSp SINE Alu -119 184 131 2111 100 14 10 chr6 49481713 49482038 -139797516 + AluSx SINE Alu 1 312 0 2284 121 0 13 chr6 49482151 49482466 -139797088 - AluSx SINE Alu -1 311 1 2348 94 3 0 chr6 49482771 49483070 -139796484 - AluSc SINE Alu -6 303 4 550 125 0 0 chr6 49483173 49483294 -139796260 + AluSg/x SINE Alu 214 334 0 1828 148 3 7 chr6 49483294 49483618 -139795936 + AluSx SINE Alu 1 323 0 2532 61 3 0 chr6 49483905 49484202 -139795352 - AluY SINE Alu -11 300 3 737 227 12 12 chr6 49484771 49484952 -139794602 + MIR SINE MIR 62 241 -21 183 204 0 0 chr6 49484977 49485021 -139794533 + (ATG)n Simple_repeat Simple_repeat 2 45 0 1222 137 0 52 chr6 49485027 49485102 -139794452 - MLT1C LTR MaLR 0 467 390 2312 104 7 0 chr6 49485102 49485401 -139794153 + AluSq SINE Alu 1 301 -12 1222 137 0 52 chr6 49485401 49485537 -139794017 - MLT1C LTR MaLR -77 390 267 1368 65 91 0 chr6 49485545 49485744 -139793810 + MSTC LTR MaLR 1 217 -211 1809 110 4 0 chr6 49485794 49486030 -139793524 - AluSx SINE Alu -15 297 61 488 133 0 0 chr6 49486046 49486121 -139793433 - MLT1C LTR MaLR 0 467 393 1238 93 0 0 chr6 49486121 49486272 -139793282 + AluSq/x SINE Alu 1 151 -161 267 135 0 0 chr6 49486272 49486309 -139793245 - Alu SINE Alu -252 50 14 4541 146 27 48 chr6 49486328 49487216 -139792338 - MER49 LTR ERV1 -50 873 5 1226 156 4 36 chr6 49487219 49487444 -139792110 + MSTC LTR MaLR 211 428 0 1257 123 66 29 chr6 49487445 49487688 -139791866 - MLT1C LTR MaLR -215 252 1 264 130 0 0 chr6 49487689 49487735 -139791819 + (ATG)n Simple_repeat Simple_repeat 2 47 0 805 262 95 49 chr6 49487829 49488176 -139791378 + L2 LINE L2 2951 3313 0 502 195 62 0 chr6 49488840 49488968 -139790586 - L1MC4 LINE L1 -2 8040 7905 1440 98 117 57 chr6 49489013 49489277 -139790277 - L1PA8A LINE L1 0 6131 5852 6487 119 1 44 chr6 49489284 49490366 -139789188 - L1PA8A LINE L1 -1289 4857 3776 1092 240 99 40 chr6 49490366 49490440 -139789114 - L1MC4 LINE L1 -67 7975 7907 1534 210 0 31 chr6 49490440 49490759 -139788795 - AluJo SINE Alu -3 309 1 1092 240 99 40 chr6 49490759 49491853 -139787701 - L1MC4 LINE L1 -135 7907 3769 180 111 0 0 chr6 49491854 49491881 -139787673 + (CA)n Simple_repeat Simple_repeat 2 28 0 2800 225 8 12 chr6 49491912 49492517 -139787037 + MER82 DNA MER2_type 50 652 -1 2311 116 0 0 chr6 49492517 49492810 -139786744 + AluSx SINE Alu 1 293 -19 514 157 78 157 chr6 49492817 49492907 -139786647 - L1MC4 LINE L1 -1344 6698 6603 2455 76 0 19 chr6 49492907 49493222 -139786332 + AluSc SINE Alu 1 309 0 514 157 78 157 chr6 49493222 49493386 -139786168 - L1MC4 LINE L1 -1439 6603 6464 213 158 184 53 chr6 49493579 49493655 -139785899 - MIR SINE MIR -103 159 74 663 238 11 28 chr6 49493695 49493876 -139785678 + MER5B DNA MER1_type 1 178 0 2110 104 9 48 chr6 49493877 49494193 -139785361 - AluSc SINE Alu -4 305 2 432 273 47 20 chr6 49494194 49494344 -139785210 + MIR SINE MIR 21 174 -88 2224 121 0 3 chr6 49494364 49494661 -139784893 - AluSx SINE Alu -16 296 1 202 216 59 39 chr6 49494840 49494912 -139784642 + L2 LINE L2 2995 3067 -205 851 166 7 33 chr6 49494960 49495111 -139784443 - AluJo SINE Alu -30 282 136 1716 206 63 29 chr6 49495113 49495602 -139783952 - L1MB4 LINE L1 -30 6150 5645 2328 89 0 10 chr6 49495607 49495909 -139783645 + AluSx SINE Alu 1 299 -13 927 197 47 26 chr6 49496247 49496440 -139783114 - AluJo SINE Alu -7 305 109 626 220 8 23 chr6 49496479 49496611 -139782943 - AluJo SINE Alu -172 130 1 270 294 134 8 chr6 49496771 49496890 -139782664 + L2 LINE L2 2922 3055 -217 847 296 48 9 chr6 49497219 49497550 -139782004 - L1MC4a LINE L1 -1908 5900 5557 184 250 234 0 chr6 49497741 49497805 -139781749 - L2 LINE L2 -43 3229 3151 297 227 67 27 chr6 49499231 49499306 -139780248 + MIR3 SINE MIR 84 161 -47 1685 173 16 13 chr6 49499798 49500105 -139779449 + AluJo SINE Alu 1 308 -4 1152 242 17 70 chr6 49500807 49501082 -139778472 - L1MB4 LINE L1 -743 5403 5394 2639 31 0 0 chr6 49501082 49501373 -139778181 + AluY SINE Alu 7 297 -14 1152 242 17 70 chr6 49501373 49501665 -139777889 - L1MB4 LINE L1 -752 5394 5088 1541 168 9 56 chr6 49501692 49501903 -139777651 + Tigger3b DNA MER2_type 2 194 -2835 2211 109 0 13 chr6 49501903 49502206 -139777348 + AluSg SINE Alu 1 299 -11 1541 168 9 56 chr6 49502206 49502315 -139777239 + Tigger3b DNA MER2_type 194 307 -2722 786 221 0 0 chr6 49502325 49502465 -139777089 - FLAM_A SINE Alu -2 140 1 4908 107 33 38 chr6 49502546 49502795 -139776759 + Tigger3b DNA MER2_type 337 586 -2442 2214 106 0 10 chr6 49502795 49503097 -139776457 - AluSx SINE Alu -13 299 1 4908 107 33 38 chr6 49503097 49503726 -139775828 + Tigger3b DNA MER2_type 586 1211 -20 23 0 0 0 chr6 49503736 49503759 -139775795 + AT_rich Low_complexity Low_complexity 1 23 0 1874 114 39 23 chr6 49503870 49504177 -139775377 - MER39B LTR ERV1 -284 369 58 2272 117 0 0 chr6 49504627 49504925 -139774629 - AluSc SINE Alu -11 298 1 315 261 51 51 chr6 49504965 49505122 -139774432 + MER69A DNA AcHobo 2 158 -19 21 0 0 0 chr6 49506153 49506174 -139773380 + AT_rich Low_complexity Low_complexity 1 21 0 2305 91 0 0 chr6 49506385 49506706 -139772848 + AluSx SINE Alu 1 321 0 1455 251 22 33 chr6 49506709 49506805 -139772749 + L1ME3A LINE L1 5557 5653 -517 3821 148 30 11 chr6 49506805 49507446 -139772108 + MER39B LTR ERV1 1 653 0 1455 251 22 33 chr6 49507446 49507799 -139771755 + L1ME3A LINE L1 5653 6001 -169 615 273 86 72 chr6 49508108 49508456 -139771098 - L2 LINE L2 -28 3244 2892 232 234 0 0 chr6 49508571 49508618 -139770936 + CT-rich Low_complexity Low_complexity 2 48 0 281 132 0 19 chr6 49508619 49508672 -139770882 + (TTCC)n Simple_repeat Simple_repeat 4 55 0 2167 135 0 6 chr6 49508718 49509029 -139770525 - AluSx SINE Alu -3 309 1 333 306 63 0 chr6 49509055 49509166 -139770388 + L2 LINE L2 3193 3310 -3 * 374 256 234 49 chr6 49509141 49509449 -139770105 - L2 LINE L2 -10 3262 2898 2351 104 0 0 chr6 49509788 49510085 -139769469 - AluSg SINE Alu -13 297 1 2057 132 3 10 chr6 49510094 49510397 -139769157 - AluSx SINE Alu -11 301 1 378 239 119 0 chr6 49510977 49511086 -139768468 + L2 LINE L2 3192 3313 0 346 235 182 0 chr6 49511195 49511252 -139768302 + MER96 DNA MER1_type? 1 46 -129 2227 130 0 3 chr6 49511252 49511553 -139768001 + AluSq SINE Alu 1 300 -13 346 235 182 0 chr6 49511553 49511627 -139767927 + MER96 DNA MER1_type? 46 156 -19 185 270 190 10 chr6 49511930 49512030 -139767524 + L2 LINE L2 3155 3272 0 336 315 125 11 chr6 49512403 49512587 -139766967 + MIR SINE MIR 57 261 -1 2302 106 3 0 chr6 49513033 49513334 -139766220 + AluSx SINE Alu 11 312 0 358 311 0 78 chr6 49513416 49513583 -139765971 + L1ME4a LINE L1 5944 6097 -24 2102 159 30 19 chr6 49514379 49514750 -139764804 + THE1C LTR MaLR 1 375 0 433 295 27 28 chr6 49514754 49514910 -139764644 + MIR SINE MIR 21 171 -37 359 295 96 19 chr6 49515293 49515449 -139764105 - L3 LINE CR1 -835 742 575 2062 145 0 19 chr6 49515640 49515957 -139763597 - AluSx SINE Alu -1 311 1 515 293 86 12 chr6 49516137 49516357 -139763197 + MIR SINE MIR 1 234 -28 584 279 240 10 chr6 49520364 49520780 -139758774 + MLT1G1 LTR MaLR 1 512 -83 2196 126 0 0 chr6 49520990 49521300 -139758254 + AluSx SINE Alu 1 310 -2 226 290 32 54 chr6 49521393 49521486 -139758068 + L2 LINE L2 3223 3313 0 466 264 78 0 chr6 49521602 49521731 -139757823 - MIR3 SINE MIR -63 145 7 2030 142 7 3 chr6 49521800 49522109 -139757445 - AluSx SINE Alu -2 310 1 446 346 149 27 chr6 49522499 49522901 -139756653 - L2 LINE L2 -404 2910 2460 207 321 189 0 chr6 49522899 49523005 -139756549 - L2 LINE L2 0 3313 3188 * 625 161 0 50 chr6 49523012 49523144 -139756410 - L1MB8 LINE L1 0 6178 6054 1616 186 3 7 chr6 49523144 49523440 -139756114 - AluJb SINE Alu -17 295 1 625 161 0 50 chr6 49523440 49523468 -139756086 - L1MB8 LINE L1 -124 6054 6026 2318 82 30 0 chr6 49523468 49523772 -139755782 + AluSp SINE Alu 1 313 0 2207 94 0 38 chr6 49523799 49524117 -139755437 - AluSx SINE Alu -6 306 1 283 236 9 82 chr6 49524123 49524233 -139755321 - L1MB8 LINE L1 -166 6012 5911 750 266 35 51 chr6 49524251 49524567 -139754987 + MLT1J LTR MaLR 1 311 -200 357 374 53 0 chr6 49524602 49524792 -139754762 - L2 LINE L2 -1040 2274 2075 200 291 70 90 chr6 49525187 49525431 -139754123 - L2 LINE L2 -1203 2111 1873 189 107 0 0 chr6 49525794 49525822 -139753732 + (GA)n Simple_repeat Simple_repeat 1 28 0 270 212 91 0 chr6 49525911 49525977 -139753577 - MLT1H LTR MaLR -475 74 3 1598 211 54 48 chr6 49525988 49526485 -139753069 - LTR29 LTR ERV1 0 622 123 403 236 18 18 chr6 49526480 49526590 -139752964 - MLT1J LTR MaLR -237 274 165 * 880 296 34 19 chr6 49526607 49527030 -139752524 + MLT1J LTR MaLR 33 511 0 407 284 24 0 chr6 49527030 49527156 -139752398 - MLT1J LTR MaLR -342 169 41 460 289 39 82 chr6 49527195 49527342 -139752212 - MIR SINE MIR 0 262 129 2358 81 10 0 chr6 49527342 49527650 -139751904 + AluSp SINE Alu 1 311 -2 460 289 39 82 chr6 49527650 49527758 -139751796 - MIR SINE MIR -133 129 18 705 196 159 0 chr6 49527760 49527923 -139751631 + MER5A DNA MER1_type 1 189 0 821 260 62 12 chr6 49528408 49528650 -139750904 - MIR SINE MIR -1 261 8 186 118 0 0 chr6 49528686 49528720 -139750834 + (T)n Simple_repeat Simple_repeat 1 34 0 327 49 0 0 chr6 49528879 49528920 -139750634 + (TG)n Simple_repeat Simple_repeat 1 41 0 223 161 16 32 chr6 49529426 49529488 -139750066 + CT-rich Low_complexity Low_complexity 5 65 0 836 282 94 13 chr6 49530001 49530310 -139749244 + LTR16C LTR ERVL 156 489 -2 498 221 45 58 chr6 49530323 49530477 -139749077 - MIR SINE MIR -21 241 90 311 174 47 0 chr6 49530552 49530638 -139748916 - MIR SINE MIR -97 111 46 256 304 0 43 chr6 49530746 49530838 -139748716 - L2 LINE L2 -46 3226 3139 398 283 69 0 chr6 49531173 49531346 -139748208 - LTR33 LTR ERVL -3 518 334 373 299 89 0 chr6 49531384 49531541 -139748013 - LTR33 LTR ERVL -275 246 76 417 307 64 7 chr6 49532005 49532145 -139747409 - MIR SINE MIR -82 180 33 206 146 0 24 chr6 49533069 49533110 -139746444 + (GA)n Simple_repeat Simple_repeat 1 40 0 326 245 61 10 chr6 49533241 49533339 -139746215 - MIR3 SINE MIR -40 168 66 528 227 49 37 chr6 49533424 49533587 -139745967 + MIR SINE MIR 88 252 -10 185 91 0 30 chr6 49533594 49533627 -139745927 + (TAA)n Simple_repeat Simple_repeat 2 33 0 489 338 92 22 chr6 49534059 49534287 -139745267 - MIR SINE MIR -1 261 18 1330 275 55 23 chr6 49535943 49536430 -139743124 - MLT1J LTR MaLR -8 503 1 878 132 16 89 chr6 49536969 49537106 -139742448 + MER5A DNA MER1_type 1 123 -66 2055 92 3 7 chr6 49537106 49537409 -139742145 - AluSx SINE Alu 0 302 1 878 132 16 89 chr6 49537409 49537460 -139742094 + MER5A DNA MER1_type 123 176 -13 573 272 15 0 chr6 49537937 49538073 -139741481 + MIR SINE MIR 125 262 0 366 276 0 29 chr6 49538959 49539064 -139740490 + MIR SINE MIR 45 146 -62 297 314 49 10 chr6 49539493 49539595 -139739959 - MER91C DNA MER1_type -34 106 1 239 247 65 13 chr6 49539877 49539954 -139739600 - MIR3 SINE MIR -22 186 106 449 279 130 13 chr6 49539972 49540126 -139739428 + MIR SINE MIR 20 191 -71 285 351 58 41 chr6 49541761 49541932 -139737622 - MIR SINE MIR -6 256 83 1103 295 57 2 chr6 49541994 49542401 -139737153 + LTR16B LTR ERVL 36 464 0 367 325 130 62 chr6 49542728 49543029 -139736525 + L2 LINE L2 2850 3184 -88 2350 80 0 0 chr6 49543029 49543329 -139736225 - AluSx SINE Alu -12 300 1 367 325 130 62 chr6 49543329 49543411 -139736143 + L2 LINE L2 3184 3259 -13 191 88 29 0 chr6 49543411 49543445 -139736109 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 350 258 0 43 chr6 49543647 49543740 -139735814 + MIR SINE MIR 21 109 -153 2227 108 3 0 chr6 49543740 49544047 -139735507 - AluSc SINE Alu -1 308 1 219 88 0 0 chr6 49544049 49544083 -139735471 + (TTCC)n Simple_repeat Simple_repeat 4 37 0 214 250 75 106 chr6 49544102 49544262 -139735292 + MIR SINE MIR 103 257 -5 986 299 105 15 chr6 49544779 49545245 -139734309 + L2 LINE L2 2794 3300 -13 186 43 0 0 chr6 49545261 49545284 -139734270 + (TATG)n Simple_repeat Simple_repeat 3 25 0 2018 138 0 0 chr6 49545285 49545576 -139733978 - AluSx SINE Alu -21 291 1 461 303 62 19 chr6 49545942 49546029 -139733525 + MIR SINE MIR 62 144 -118 2183 114 7 0 chr6 49546029 49546336 -139733218 + AluSx SINE Alu 1 309 -3 461 303 62 19 chr6 49546336 49546410 -139733144 + MIR SINE MIR 144 230 -32 251 350 31 10 chr6 49546762 49546859 -139732695 - L2 LINE L2 -16 3256 3158 308 254 282 7 chr6 49547631 49547773 -139731781 - MER5A DNA MER1_type 0 189 9 474 61 0 0 chr6 49548058 49548124 -139731430 + (CA)n Simple_repeat Simple_repeat 1 66 0 674 185 82 14 chr6 49548470 49548616 -139730938 + MIR SINE MIR 79 234 -28 403 265 14 148 chr6 49549481 49549704 -139729850 + MIR SINE MIR 70 262 0 22 0 0 0 chr6 49550311 49550333 -139729221 + GC_rich Low_complexity Low_complexity 1 22 0 275 346 109 19 chr6 49552683 49552839 -139726715 + L2 LINE L2 3096 3265 -7 817 269 102 3 chr6 49554406 49554730 -139724824 + LTR16A LTR ERVL 95 450 0 246 301 40 122 chr6 49555100 49555396 -139724158 + L2 LINE L2 2993 3264 -8 889 296 58 47 chr6 49555479 49555965 -139723589 + LTR16C LTR ERVL 1 491 0 268 285 153 21 chr6 49556162 49556306 -139723248 - MIR SINE MIR -15 247 85 282 29 0 0 chr6 49556726 49556761 -139722793 + (TG)n Simple_repeat Simple_repeat 1 35 0 912 208 33 0 chr6 49558055 49558238 -139721316 - MER5A DNA MER1_type 0 189 1 413 262 226 0 chr6 49558279 49558443 -139721111 + MIR SINE MIR 14 214 -48 188 250 0 0 chr6 49558510 49558546 -139721008 + MIR SINE MIR 225 260 -2 472 278 38 13 chr6 49559019 49559203 -139720351 - MIR3 SINE MIR -69 139 3 547 156 0 0 chr6 49560405 49560495 -139719059 - L1MB7 LINE L1 -8 6176 6087 1553 204 6 14 chr6 49560496 49560849 -139718705 - L1MB7 LINE L1 -322 5862 5513 263 250 29 0 chr6 49560888 49560956 -139718598 + MLT1L LTR MaLR 5 74 -541 321 258 159 6 chr6 49561053 49561216 -139718338 - LTR16A1 LTR ERVL -83 374 187 2130 122 3 3 chr6 49561703 49562014 -139717540 - AluSx SINE Alu -1 311 1 288 143 0 0 chr6 49562542 49562598 -139716956 + (GA)n Simple_repeat Simple_repeat 1 56 0 369 141 0 0 chr6 49564267 49564338 -139715216 + (GA)n Simple_repeat Simple_repeat 1 71 0 192 274 0 0 chr6 49564405 49564456 -139715098 - L2 LINE L2 -1 3271 3221 1298 265 57 0 chr6 49565581 49565966 -139713588 - LTR16C LTR ERVL 0 491 85 2356 99 0 0 chr6 49566265 49566569 -139712985 - AluSg1 SINE Alu -5 304 1 1180 130 6 0 chr6 49568158 49568319 -139711235 - AluJb SINE Alu -17 295 134 305 234 32 121 chr6 49568346 49568372 -139711182 + L2 LINE L2 3164 3191 -122 2298 98 0 3 chr6 49568372 49568668 -139710886 - AluSg SINE Alu -15 295 1 305 234 32 121 chr6 49568668 49568765 -139710789 + L2 LINE L2 3191 3276 -37 3120 214 9 80 chr6 49568871 49568920 -139710634 - L1MEc LINE L1 -5468 928 877 2355 112 3 0 chr6 49568920 49569232 -139710322 - AluSp SINE Alu 0 313 1 3120 214 9 80 chr6 49569232 49570130 -139709424 - L1MEc LINE L1 -5519 877 48 276 252 165 0 chr6 49570282 49570397 -139709157 - MLT1H LTR MaLR -10 539 406 1574 160 6 99 chr6 49571285 49571617 -139707937 + AluJo SINE Alu 1 301 -1 240 35 0 0 chr6 49571755 49571784 -139707770 + (TG)n Simple_repeat Simple_repeat 1 29 0 187 248 128 43 chr6 49571850 49571967 -139707587 - L2 LINE L2 -9 3263 3137 399 261 135 47 chr6 49572048 49572263 -139707291 - L2 LINE L2 -58 3255 3022 183 278 122 11 chr6 49572295 49572385 -139707169 + MIR3 SINE MIR 104 203 -5 287 113 38 0 chr6 49573787 49573840 -139705714 - Alu SINE Alu 0 302 248 536 145 16 59 chr6 49573848 49574034 -139705520 + CT-rich Low_complexity Low_complexity 3 180 0 1137 55 11 27 chr6 49574038 49574221 -139705333 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 209 193 0 18 chr6 49574233 49574290 -139705264 + CT-rich Low_complexity Low_complexity 1 56 0 2200 128 7 0 chr6 49574290 49574595 -139704959 - AluSx SINE Alu -3 309 3 427 245 14 63 chr6 49574724 49574867 -139704687 + MIR3 SINE MIR 10 145 -63 481 219 175 44 chr6 49574894 49575054 -139704500 + MER5A DNA MER1_type 4 184 -5 419 284 72 7 chr6 49575563 49575710 -139703844 + MER5B DNA MER1_type 3 189 0 222 321 132 9 chr6 49576314 49576420 -139703134 - MIR SINE MIR -71 137 19 643 237 81 34 chr6 49577421 49577666 -139701888 + MIR SINE MIR 3 251 -11 1496 299 152 29 chr6 49577923 49579497 -139700057 + L2 LINE L2 1531 3310 -3 252 77 0 0 chr6 49579582 49579621 -139699933 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 370 293 184 34 chr6 49580923 49581017 -139698537 + L2 LINE L2 2640 2718 -595 2176 116 59 31 chr6 49581017 49581371 -139698183 + THE1B LTR MaLR 1 364 0 370 293 184 34 chr6 49581371 49581583 -139697971 + L2 LINE L2 2718 2991 -322 626 219 100 43 chr6 49581789 49581999 -139697555 + MLT1J LTR MaLR 33 254 -257 847 172 26 0 chr6 49582854 49583005 -139696549 + MLT1A2 LTR MaLR 1 155 -219 635 117 10 0 chr6 49583035 49583138 -139696416 + (TC)n Simple_repeat Simple_repeat 2 105 0 303 330 0 0 chr6 49583138 49583229 -139696325 + MLT1A2 LTR MaLR 173 263 -111 2394 136 14 3 chr6 49583229 49583590 -139695964 + MLT1A1 LTR MaLR 1 365 0 2354 114 0 3 chr6 49583628 49583934 -139695620 - AluSq SINE Alu -8 305 1 801 254 47 19 chr6 49584023 49584236 -139695318 - MIR SINE MIR -35 227 9 277 224 26 26 chr6 49584577 49584653 -139694901 - MIR3 SINE MIR -21 187 112 231 241 0 0 chr6 49585959 49586013 -139693541 - MIR SINE MIR -65 143 90 302 299 24 24 chr6 49586410 49586574 -139692980 + GA-rich Low_complexity Low_complexity 4 167 0 2229 115 3 13 chr6 49586617 49586930 -139692624 - AluSg SINE Alu 0 310 1 276 242 0 48 chr6 49586966 49587028 -139692526 + MIR3 SINE MIR 98 156 -52 531 187 122 8 chr6 49587354 49587477 -139692077 + MIR SINE MIR 21 157 -105 187 167 33 83 chr6 49588071 49588131 -139691423 - MER5B DNA MER1_type -101 77 21 180 0 0 0 chr6 49588168 49588188 -139691366 + (T)n Simple_repeat Simple_repeat 1 20 0 1885 135 3 75 chr6 49588203 49588537 -139691017 - AluJb SINE Alu 0 312 3 5343 160 34 25 chr6 49589086 49589592 -139689962 - L1MC2 LINE L1 -2 6342 5842 2197 122 0 0 chr6 49589592 49589887 -139689667 - AluSx SINE Alu -15 297 3 5343 160 34 25 chr6 49589887 49590589 -139688965 - L1MC2 LINE L1 -502 5842 5122 268 192 100 73 chr6 49591395 49591531 -139688023 + L1M4 LINE L1 4931 5063 -1083 404 292 62 31 chr6 49591532 49591693 -139687861 + MIR SINE MIR 73 238 -24 276 208 89 58 chr6 49591728 49591882 -139687672 - L1ME LINE L1 -669 5501 5335 1923 143 10 27 chr6 49591882 49592183 -139687371 + AluJb SINE Alu 1 296 -16 276 208 89 58 chr6 49592183 49592240 -139687314 - L1ME LINE L1 -835 5335 5281 198 143 0 0 chr6 49592240 49592275 -139687279 + (TA)n Simple_repeat Simple_repeat 2 36 0 2491 80 7 0 chr6 49592445 49592745 -139686809 - AluSx SINE Alu -8 304 3 2397 178 18 12 chr6 49592756 49593244 -139686310 - L1MC3 LINE L1 0 7785 7295 2355 88 17 0 chr6 49593255 49593550 -139686004 - AluSx SINE Alu -12 300 1 2463 89 0 0 chr6 49594431 49594734 -139684820 - AluSx SINE Alu -9 303 1 328 219 35 35 chr6 49594845 49594959 -139684595 + L1ME4a LINE L1 6007 6120 -1 1840 230 62 4 chr6 49595064 49595517 -139684037 + REP3 LTR ERV 1 479 -83 1647 234 48 2 chr6 49595637 49596055 -139683499 + Charlie4a DNA MER1_type 2 438 -70 336 284 64 28 chr6 49596092 49596201 -139683353 + MIR3 SINE MIR 70 182 -26 354 249 147 40 chr6 49596356 49596564 -139682990 + L1ME4a LINE L1 5678 5862 -259 1599 153 35 45 chr6 49596564 49596874 -139682680 - AluJb SINE Alu 0 307 1 354 249 147 40 chr6 49596874 49597070 -139682484 + L1ME4a LINE L1 5862 6121 0 1002 262 20 28 chr6 49597775 49598042 -139681512 - MIR SINE MIR 0 262 1 2199 125 3 3 chr6 49598262 49598566 -139680988 + AluSx SINE Alu 1 304 -8 336 290 60 38 chr6 49599668 49599851 -139679703 - L3b LINE CR1 -136 1447 1261 2368 87 0 22 chr6 49599852 49600196 -139679358 + AluSq SINE Alu 1 313 0 366 268 98 16 chr6 49600694 49600817 -139678737 - MIR SINE MIR -77 185 53 * 686 317 162 35 chr6 49600810 49601082 -139678472 - L3 LINE CR1 -66 1511 1275 2181 81 0 90 chr6 49601082 49601404 -139678150 - AluSc SINE Alu -16 293 1 686 317 162 35 chr6 49601404 49601588 -139677966 - L3 LINE CR1 -302 1275 997 190 238 0 127 chr6 49601605 49601668 -139677886 - L2 LINE L2 -11 3261 3207 * 434 267 59 42 chr6 49601654 49601844 -139677710 - MIR SINE MIR -34 228 33 328 320 226 19 chr6 49601851 49602160 -139677394 - L3 LINE CR1 -571 1006 634 315 333 71 7 chr6 49603199 49603340 -139676214 - MIR SINE MIR -74 188 39 958 262 169 9 chr6 49603346 49603853 -139675701 - L2 LINE L2 0 3313 2714 424 268 176 13 chr6 49604824 49604977 -139674577 + MER5B DNA MER1_type 1 178 0 286 301 98 15 chr6 49605292 49605425 -139674129 - MIR3 SINE MIR -45 163 20 1083 185 77 0 chr6 49607986 49608181 -139671373 + MER63A DNA MER1_type 1 210 0 756 314 53 34 chr6 49608337 49608748 -139670806 + LTR33 LTR ERVL 103 521 0 5952 148 24 11 chr6 49610401 49612476 -139667078 + L1MA7 LINE L1 4187 6289 -2 1662 166 21 19 chr6 49612501 49612826 -139666728 + MLT2B1 LTR ERVL 195 520 0 276 273 0 0 chr6 49613380 49613446 -139666108 - L2 LINE L2 0 3272 3207 288 115 19 19 chr6 49613448 49613500 -139666054 - MIR3 SINE MIR -45 163 112 374 221 0 0 chr6 49613551 49613619 -139665935 - L2 LINE L2 0 3272 3205 1430 190 99 0 chr6 49614050 49614334 -139665220 - AluJo SINE Alu 0 312 1 345 154 63 0 chr6 49615170 49615313 -139664241 + (CA)n Simple_repeat Simple_repeat 1 152 0 293 145 53 40 chr6 49615293 49615445 -139664109 + (CATA)n Simple_repeat Simple_repeat 4 157 0 * 255 170 19 19 chr6 49615452 49615505 -139664049 + (CA)n Simple_repeat Simple_repeat 1 53 0 298 311 108 54 chr6 49616365 49616606 -139662948 - L2 LINE L2 -3 3269 3016 616 250 134 17 chr6 49616794 49617026 -139662528 + MIR SINE MIR 2 260 -2 192 152 0 0 chr6 49617529 49617562 -139661992 + (CA)n Simple_repeat Simple_repeat 1 33 0 2026 209 33 9 chr6 49617589 49618015 -139661539 + MER63B DNA MER1_type 1 436 0 6038 159 22 8 chr6 49619139 49621153 -139658401 - L1PA16 LINE L1 0 6166 4125 340 279 215 12 chr6 49622029 49622201 -139657353 + MIR SINE MIR 2 208 -54 1588 288 72 43 chr6 49623077 49623730 -139655824 + L3 LINE CR1 901 1572 -5 404 293 227 4 chr6 49624034 49624259 -139655295 - L3 LINE CR1 -11 1566 1292 2268 98 10 0 chr6 49724344 49724649 -139554905 + AluSq SINE Alu 1 308 -5 2295 59 0 7 chr6 49724898 49725184 -139554370 + AluY SINE Alu 1 284 -27 387 0 0 0 chr6 49725184 49725227 -139554327 + (CA)n Simple_repeat Simple_repeat 2 44 0 2171 99 0 0 chr6 49726924 49727208 -139552346 + AluSc SINE Alu 1 284 -25 785 177 48 7 chr6 49727523 49727670 -139551884 - FRAM SINE Alu -4 172 20 1642 125 156 0 chr6 49727677 49727933 -139551621 - AluSq SINE Alu -7 296 1 2101 113 3 0 chr6 49727934 49728235 -139551319 - AluSx SINE Alu -10 302 1 29 0 0 0 chr6 49728273 49728302 -139551252 + AT_rich Low_complexity Low_complexity 1 29 0 898 197 0 0 chr6 49729585 49729737 -139549817 + FRAM SINE Alu 4 155 -11 2162 102 7 0 chr6 49729875 49730168 -139549386 + AluSg SINE Alu 1 295 -15 1712 167 31 14 chr6 49730178 49730465 -139549089 + AluJb SINE Alu 1 292 -20 2455 80 0 0 chr6 49730472 49730783 -139548771 + AluY SINE Alu 1 311 0 828 75 0 0 chr6 49730795 49730902 -139548652 + AluSc SINE Alu 1 107 -202 340 317 112 0 chr6 49730979 49731140 -139548414 - MIR SINE MIR -30 232 54 2100 137 0 0 chr6 49731151 49731457 -139548097 - AluSg1 SINE Alu -3 306 1 648 213 0 44 chr6 49731480 49731616 -139547938 - FLAM_C SINE Alu -13 130 1 2092 125 3 0 chr6 49731658 49731954 -139547600 + AluSx SINE Alu 1 297 -15 439 130 0 14 chr6 49732042 49732111 -139547443 - AluJo SINE Alu -19 293 226 1037 183 33 0 chr6 49732111 49732291 -139547263 - AluJo SINE Alu -126 186 1 2068 99 0 7 chr6 49732597 49732907 -139546647 - AluSg SINE Alu 0 308 1 1972 99 46 30 chr6 49732920 49733223 -139546331 - AluSc SINE Alu -1 308 1 2148 129 0 0 chr6 49733228 49733538 -139546016 - AluSg SINE Alu 0 310 1 806 160 0 8 chr6 49733547 49733672 -139545882 - AluJo SINE Alu -176 136 13 2134 125 0 3 chr6 49733721 49734025 -139545529 - AluSx SINE Alu -9 303 1 1108 158 16 0 chr6 49734343 49734527 -139545027 - AluSg/x SINE Alu -6 304 118 25 0 0 0 chr6 49734527 49734552 -139545002 + AT_rich Low_complexity Low_complexity 1 25 0 1433 126 5 14 chr6 49734552 49734631 -139544923 - AluSx SINE Alu -99 213 135 2414 70 3 0 chr6 49734631 49734932 -139544622 - AluY SINE Alu -9 302 1 1433 126 5 14 chr6 49734932 49735067 -139544487 - AluSx SINE Alu -177 135 1 2238 95 0 3 chr6 49735177 49735483 -139544071 - AluSg SINE Alu -5 305 1 612 191 22 52 chr6 49735490 49735626 -139543928 - FLAM_C SINE Alu -1 132 1 482 179 0 94 chr6 49735815 49735882 -139543672 + AluJo SINE Alu 77 130 -182 2292 79 0 0 chr6 49735882 49736172 -139543382 + AluY SINE Alu 1 290 -21 482 179 0 94 chr6 49736172 49736221 -139543333 + AluJo SINE Alu 130 182 -130 * 522 148 0 0 chr6 49736218 49736299 -139543255 + AluJ/FRAM SINE Alu 218 298 -14 2112 125 10 0 chr6 49736502 49736807 -139542747 + AluSx SINE Alu 1 308 -4 2121 87 37 7 chr6 49737166 49737465 -139542089 + AluSq SINE Alu 1 308 -5 186 147 0 29 chr6 49738607 49738641 -139540913 - MIR3 SINE MIR -31 177 145 1026 95 19 6 chr6 49738642 49738800 -139540754 - AluSg/x SINE Alu -19 293 134 2093 110 7 19 chr6 49738800 49738996 -139540558 - AluSx SINE Alu -6 306 114 1856 92 4 0 chr6 49738996 49739246 -139540308 - AluSg1 SINE Alu -43 266 16 2093 110 7 19 chr6 49739246 49739359 -139540195 - AluSx SINE Alu -198 114 1 184 211 26 0 chr6 49739363 49739401 -139540153 - MIR SINE MIR -61 147 109 26 30 0 0 chr6 49739690 49739723 -139539831 + GC_rich Low_complexity Low_complexity 1 33 0 364 308 62 41 chr6 49740818 49741013 -139538541 + MIR SINE MIR 54 252 -10 311 358 47 5 chr6 49741400 49741414 -139538140 + L2 LINE L2 3080 3092 -221 1937 109 59 30 chr6 49741414 49741717 -139537837 - AluSx SINE Alu 0 312 1 311 358 47 5 chr6 49741717 49741892 -139537662 + L2 LINE L2 3092 3277 -36 1988 52 0 12 chr6 49742014 49742263 -139537291 - AluY SINE Alu -12 299 54 221 0 0 33 chr6 49744157 49744187 -139535367 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 713 185 8 8 chr6 49744187 49744306 -139535248 - AluJb SINE Alu -188 124 3 1035 161 0 0 chr6 49744375 49744536 -139535018 - AluSg/x SINE Alu -18 292 132 729 319 24 67 chr6 49744720 49744906 -139534648 - L1MC4a LINE L1 -1868 5940 5748 2486 77 0 0 chr6 49744906 49745218 -139534336 - AluSq SINE Alu -1 312 1 729 319 24 67 chr6 49745218 49745310 -139534244 - L1MC4a LINE L1 -2060 5748 5654 1524 65 52 60 chr6 49745310 49745463 -139534091 - MER30 DNA MER1_type 0 230 78 2165 59 3 46 chr6 49745463 49745799 -139533755 - AluY SINE Alu 0 311 1 1524 65 52 60 chr6 49745799 49745877 -139533677 - MER30 DNA MER1_type -152 78 1 729 319 24 67 chr6 49745877 49746314 -139533240 - L1MC4a LINE L1 -2154 5654 5255 269 257 29 0 chr6 49746568 49746638 -139532916 - L2 LINE L2 0 3313 3242 2199 88 0 10 chr6 49746691 49747013 -139532541 - AluY SINE Alu 0 311 1 2093 119 16 0 chr6 49747015 49747318 -139532236 - AluSg SINE Alu -2 308 1 2265 82 0 25 chr6 49747384 49747701 -139531853 - AluY SINE Alu -2 309 1 843 113 17 0 chr6 49747728 49747843 -139531711 - FLAM_C SINE Alu -26 117 1 2066 121 7 7 chr6 49747877 49748175 -139531379 - AluSx SINE Alu -14 298 1 1238 194 57 21 chr6 49748285 49748594 -139530960 - AluJo SINE Alu 0 312 1 2141 128 3 0 chr6 49748842 49749147 -139530407 - AluSx SINE Alu 0 312 7 2122 138 3 0 chr6 49749248 49749559 -139529995 - AluSx SINE Alu 0 312 1 989 83 0 8 chr6 49749561 49749694 -139529860 - AluSq/x SINE Alu -181 132 1 2202 104 0 3 chr6 49751577 49751874 -139527680 + AluSg SINE Alu 1 296 -14 640 220 0 0 chr6 49751880 49751998 -139527556 - FLAM_C SINE Alu -25 118 1 1971 142 0 16 chr6 49752007 49752316 -139527238 - AluSx SINE Alu -8 304 1 451 273 79 7 chr6 49754165 49754304 -139525250 + MER91A DNA MER1_type 47 195 -1 629 37 0 0 chr6 49756633 49756714 -139522840 + HY3 scRNA scRNA 1 81 -20 1864 141 16 10 chr6 49756732 49757037 -139522517 + AluJb SINE Alu 1 307 -5 204 343 97 15 chr6 49757132 49757266 -139522288 - MIR3 SINE MIR -61 147 3 393 314 43 5 chr6 49759757 49759942 -139519612 - L2 LINE L2 -411 2903 2712 211 182 212 0 chr6 49760357 49760423 -139519131 - MIR SINE MIR -99 109 30 562 169 203 0 chr6 49760582 49760700 -139518854 - FLAM_C SINE Alu -1 142 1 2346 96 3 0 chr6 49761354 49761666 -139517888 - AluSq SINE Alu 0 313 1 2079 111 0 0 chr6 49761669 49761969 -139517585 - AluSx SINE Alu 0 305 6 2429 67 3 13 chr6 49762640 49762956 -139516598 + AluSp SINE Alu 1 313 0 1796 141 0 35 chr6 49763089 49763401 -139516153 + AluJb SINE Alu 3 303 -9 2399 39 3 0 chr6 49763634 49763918 -139515636 - AluY SINE Alu -26 285 1 308 290 0 30 chr6 49764036 49764136 -139515418 + MIR SINE MIR 51 147 -115 744 101 70 8 chr6 49764163 49764292 -139515262 - LTR7 LTR ERV1 -313 137 1 355 242 102 8 chr6 49764453 49764581 -139514973 - MIR SINE MIR -4 258 119 1826 131 30 37 chr6 49764588 49764886 -139514668 - AluJo SINE Alu 0 312 17 267 79 0 0 chr6 49764991 49765029 -139514525 + (CCCTG)n Simple_repeat Simple_repeat 1 38 0 1752 97 30 118 chr6 49765040 49765370 -139514184 - AluSq SINE Alu -12 301 1 1929 126 10 17 chr6 49766772 49767073 -139512481 - AluSq SINE Alu -14 299 1 792 165 24 0 chr6 49767175 49767302 -139512252 - FLAM_C SINE Alu -13 130 1 2153 110 0 28 chr6 49767459 49767778 -139511776 - AluSg SINE Alu 0 310 1 315 255 106 11 chr6 49768502 49768596 -139510958 + L1MC4 LINE L1 6599 6701 -1341 529 136 239 7 chr6 49768603 49768758 -139510796 - L1ME3 LINE L1 -2 6160 5970 2292 82 7 3 chr6 49770161 49770466 -139509088 - AluSq SINE Alu 0 313 8 1727 269 45 2 chr6 49770479 49770951 -139508603 - L1MB7 LINE L1 -54 6130 5639 882 131 21 7 chr6 49771264 49771430 -139508124 + AluJb SINE Alu 137 304 0 189 365 130 0 chr6 49775262 49775377 -139504177 + L2 LINE L2 3139 3268 -4 260 370 0 43 chr6 49778336 49778391 -139501163 - L2 LINE L2 -39 3233 3177 2117 118 16 0 chr6 49778391 49778695 -139500859 + AluSx SINE Alu 1 309 -3 260 370 0 43 chr6 49778695 49778777 -139500777 - L2 LINE L2 -95 3177 3102 2183 75 0 0 chr6 49778917 49779236 -139500318 + AluY SINE Alu 1 319 0 924 230 116 90 chr6 49779241 49779307 -139500247 + L1MC5 LINE L1 6973 7036 -925 548 140 50 10 chr6 49779307 49779407 -139500147 + U6 snRNA snRNA 1 104 -3 924 230 116 90 chr6 49779407 49779422 -139500132 + L1MC5 LINE L1 7036 7049 -912 2292 74 0 20 chr6 49779422 49779719 -139499835 + AluSc SINE Alu 1 291 -18 924 230 116 90 chr6 49779719 49779889 -139499665 + L1MC5 LINE L1 7049 7213 -748 2155 78 3 11 chr6 49779889 49780201 -139499353 + AluSc SINE Alu 1 310 0 924 230 116 90 chr6 49780201 49780565 -139498989 + L1MC5 LINE L1 7213 7566 -395 1774 162 3 14 chr6 49780565 49780699 -139498855 + AluJo SINE Alu 1 135 -177 2220 92 3 10 chr6 49780699 49781049 -139498505 + AluSp SINE Alu 1 313 0 1774 162 3 14 chr6 49781049 49781211 -139498343 + AluJo SINE Alu 135 294 -18 924 230 116 90 chr6 49781211 49781317 -139498237 + L1MC5 LINE L1 7566 7723 -238 2289 87 0 7 chr6 49781317 49781626 -139497928 + AluSc SINE Alu 1 307 -2 924 230 116 90 chr6 49781626 49781673 -139497881 + L1MC5 LINE L1 7723 7767 -194 838 256 11 5 chr6 49781673 49781864 -139497690 + AluJo SINE Alu 116 307 -5 375 229 38 23 chr6 49781868 49781919 -139497635 + L1MC5 LINE L1 7771 7820 -141 2209 125 0 0 chr6 49781919 49782231 -139497323 + AluSx SINE Alu 1 312 0 375 229 38 23 chr6 49782231 49782310 -139497244 + L1MC5 LINE L1 7820 7903 -58 2125 99 17 0 chr6 49782343 49782637 -139496917 + AluSx SINE Alu 1 299 -13 2274 98 3 0 chr6 49783621 49783927 -139495627 - AluSc SINE Alu -2 307 1 1838 105 124 0 chr6 49783942 49784208 -139495346 - AluSg SINE Alu 0 300 2 1978 151 0 0 chr6 49784246 49784551 -139495003 - AluSx SINE Alu -7 305 1 844 150 0 0 chr6 49784568 49784695 -139494859 - FLAM_C SINE Alu -16 127 1 2215 97 0 0 chr6 49784715 49785014 -139494540 - AluSx SINE Alu -13 299 1 2053 90 30 3 chr6 49785072 49785372 -139494182 + AluY SINE Alu 1 308 -3 319 325 73 7 chr6 49785795 49785946 -139493608 - MIR3 SINE MIR -27 181 21 577 122 12 0 chr6 49785998 49786080 -139493474 - AluJ/FLAM SINE Alu -228 84 2 1902 159 0 0 chr6 49786812 49787108 -139492446 - AluSx SINE Alu -16 296 1 2269 91 0 0 chr6 49787154 49787452 -139492102 + AluSg SINE Alu 1 298 -12 2303 74 24 0 chr6 49787725 49788022 -139491532 + AluSq SINE Alu 1 304 -9 427 327 152 0 chr6 49788069 49788280 -139491274 - L2 LINE L2 -847 2467 2225 2091 113 10 0 chr6 49788349 49788642 -139490912 - AluSx SINE Alu -16 296 1 2237 70 10 10 chr6 49789247 49789569 -139489985 + AluY SINE Alu 1 311 0 1925 132 0 38 chr6 49789615 49789933 -139489621 + AluSx SINE Alu 1 306 -6 2199 82 0 0 chr6 49789969 49790251 -139489303 + AluSq SINE Alu 1 282 -31 414 0 0 0 chr6 49790251 49790297 -139489257 + (CA)n Simple_repeat Simple_repeat 1 46 0 2342 77 3 0 chr6 49790312 49790612 -139488942 + AluY SINE Alu 1 301 -10 2169 94 34 0 chr6 49791249 49791546 -139488008 - AluSx SINE Alu -5 307 1 427 298 51 6 chr6 49792497 49792655 -139486899 - MIR3 SINE MIR -29 179 15 181 283 123 28 chr6 49792908 49793014 -139486540 + L3 LINE CR1 1353 1468 -109 236 266 47 78 chr6 49793723 49793820 -139485734 + L2 LINE L2 3189 3283 -30 1903 160 0 3 chr6 49793820 49794132 -139485422 + AluSx SINE Alu 1 311 -1 236 266 47 78 chr6 49794132 49794162 -139485392 + L2 LINE L2 3283 3312 -1 2166 131 45 72 chr6 49794224 49794668 -139484886 + MSTB1 LTR MaLR 1 432 0 1991 125 0 17 chr6 49794696 49794992 -139484562 + AluSg SINE Alu 1 291 -19 387 0 0 0 chr6 49794994 49795037 -139484517 + (TG)n Simple_repeat Simple_repeat 2 44 0 253 291 55 9 chr6 49795265 49795375 -139484179 - MIR SINE MIR -56 206 92 2274 95 0 0 chr6 49795391 49795695 -139483859 - AluSx SINE Alu -8 304 1 183 100 0 0 chr6 49795769 49795799 -139483755 + (TCC)n Simple_repeat Simple_repeat 2 31 0 283 200 0 29 chr6 49796786 49796856 -139482698 + MIR SINE MIR 189 256 -6 221 281 164 14 chr6 49797119 49797215 -139482339 - L2 LINE L2 0 3313 3233 351 44 0 0 chr6 49797215 49797260 -139482294 + (TG)n Simple_repeat Simple_repeat 2 46 0 221 281 164 14 chr6 49797260 49797309 -139482245 - L2 LINE L2 -80 3233 3146 2275 105 0 0 chr6 49798916 49799229 -139480325 - AluSq SINE Alu 0 313 1 804 178 70 6 chr6 49799258 49799415 -139480139 + L1M1 LINE L1 509 675 -6890 423 0 0 0 chr6 49800520 49800567 -139478987 + (TG)n Simple_repeat Simple_repeat 1 47 0 443 268 110 18 chr6 49803069 49803233 -139476321 + MIR SINE MIR 2 180 -82 2018 89 51 14 chr6 49803234 49803526 -139476028 - AluSx SINE Alu -9 303 1 1661 124 23 12 chr6 49803878 49804136 -139475418 + AluSx SINE Alu 35 295 -17 2213 89 7 0 chr6 49805085 49805377 -139474177 + AluSx SINE Alu 1 294 -18 226 258 68 98 chr6 49810166 49810298 -139469256 - L2 LINE L2 -213 3059 2932 260 356 166 5 chr6 49810483 49810904 -139468650 - L2 LINE L2 -604 2710 2222 2367 61 3 0 chr6 49811060 49811356 -139468198 + AluY SINE Alu 1 297 -14 224 159 23 0 chr6 49811450 49811494 -139468060 - MIR SINE MIR -133 75 31 982 123 0 26 chr6 49813555 49813710 -139465844 + AluJb SINE Alu 152 302 -10 218 301 129 0 chr6 49813712 49813805 -139465749 + MIR SINE MIR 158 262 0 2155 107 27 0 chr6 49813812 49814112 -139465442 - AluSc SINE Alu -1 308 1 372 311 71 36 chr6 49816702 49816850 -139462704 - MIR SINE MIR -3 259 101 2278 92 7 0 chr6 49816850 49817153 -139462401 + AluSx SINE Alu 1 305 -7 372 311 71 36 chr6 49817153 49817200 -139462354 - MIR SINE MIR -161 101 57 767 220 100 118 chr6 49819217 49819421 -139460133 + L1MC4a LINE L1 7268 7474 -334 2208 95 7 0 chr6 49819421 49819717 -139459837 - AluSp SINE Alu -14 299 2 767 220 100 118 chr6 49819717 49819745 -139459809 + L1MC4a LINE L1 7474 7501 -307 1589 195 0 20 chr6 49819745 49820048 -139459506 - AluJo SINE Alu -15 297 1 1670 176 21 0 chr6 49820054 49820233 -139459321 - AluJb SINE Alu -10 302 113 230 0 33 0 chr6 49820233 49820263 -139459291 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 1670 176 21 0 chr6 49820263 49820373 -139459181 - AluJb SINE Alu -199 113 7 767 220 100 118 chr6 49820373 49820682 -139458872 + L1MC4a LINE L1 7506 7807 -1 342 0 0 0 chr6 49820696 49820734 -139458820 + (CA)n Simple_repeat Simple_repeat 2 39 0 256 234 0 0 chr6 49821568 49821615 -139457939 + Charlie1 DNA MER1_type 23 69 -2692 1548 161 74 37 chr6 49821616 49822020 -139457534 + Charlie1 DNA MER1_type 2343 2761 0 2163 99 0 0 chr6 49823442 49823734 -139455820 - AluY SINE Alu -19 292 1 462 18 0 0 chr6 49824806 49824861 -139454693 + (TG)n Simple_repeat Simple_repeat 1 55 0 205 290 10 40 chr6 49825588 49825688 -139453866 + CT-rich Low_complexity Low_complexity 2 98 0 1173 170 0 16 chr6 49826858 49826995 -139452559 + AluSx SINE Alu 1 136 -176 2040 100 3 72 chr6 49826995 49827131 -139452423 + AluSx SINE Alu 1 145 -167 2270 94 0 0 chr6 49827131 49827430 -139452124 + AluSc SINE Alu 1 299 -10 2040 100 3 72 chr6 49827430 49827624 -139451930 + AluSx SINE Alu 145 308 -4 1173 170 0 16 chr6 49827624 49827680 -139451874 + AluSx SINE Alu 136 191 -121 605 56 0 0 chr6 49827680 49827752 -139451802 + AluSc SINE Alu 57 128 -181 2148 110 3 0 chr6 49827752 49828044 -139451510 - AluSp SINE Alu -20 293 1 248 0 0 30 chr6 49828045 49828078 -139451476 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 818 177 0 0 chr6 49828203 49828327 -139451227 + FLAM_C SINE Alu 2 125 -8 1265 141 0 5 chr6 49828333 49828524 -139451030 + AluSq SINE Alu 6 195 -118 1936 94 0 8 chr6 49830161 49830449 -139449105 + AluSx SINE Alu 49 334 0 27 0 0 0 chr6 49830716 49830743 -139448811 + AT_rich Low_complexity Low_complexity 1 27 0 267 246 144 0 chr6 49830782 49830900 -139448654 + L1ME LINE L1 5753 5887 -283 634 223 41 0 chr6 49830901 49831022 -139448532 + AluJo/FLAM SINE Alu 1 126 -176 2161 93 0 0 chr6 49831022 49831345 -139448209 + AluSc SINE Alu 1 323 0 2253 106 0 0 chr6 49831355 49831666 -139447888 + AluSp SINE Alu 1 311 -2 1831 127 57 13 chr6 49831673 49831972 -139447582 + AluJb SINE Alu 1 312 0 246 267 40 10 chr6 49832059 49832160 -139447394 - L1ME2 LINE L1 -215 5949 5846 1394 136 66 73 chr6 49832287 49832589 -139446965 - AluJo SINE Alu 0 312 13 514 133 36 0 chr6 49832589 49832672 -139446882 - AluJ/FLAM SINE Alu -225 87 2 2152 97 0 3 chr6 49832681 49832980 -139446574 - AluSx SINE Alu -14 298 1 311 327 73 0 chr6 49832994 49833104 -139446450 - L1M4 LINE L1 -1667 4479 4362 875 161 0 8 chr6 49835943 49836073 -139443481 - FLAM_C SINE Alu -3 130 2 619 256 52 56 chr6 49836079 49836265 -139443289 + L1ME3A LINE L1 5587 5773 -397 2247 95 0 0 chr6 49836265 49836559 -139442995 + AluSg SINE Alu 1 294 -16 619 256 52 56 chr6 49836559 49836641 -139442913 + L1ME3A LINE L1 5773 5854 -316 1979 140 0 13 chr6 49836641 49836949 -139442605 + AluSx SINE Alu 1 304 -8 1002 179 0 0 chr6 49836949 49837111 -139442443 + AluSg/x SINE Alu 132 293 -17 365 250 81 128 chr6 49837112 49837254 -139442300 + L1ME3A LINE L1 5843 5990 -180 2523 39 0 10 chr6 49837254 49837563 -139441991 - AluY SINE Alu -4 307 2 365 250 81 128 chr6 49837563 49837764 -139441790 + L1ME3A LINE L1 5990 6170 0 304 248 103 8 chr6 49837895 49838012 -139441542 + L2 LINE L2 2994 3121 -192 1327 107 0 15 chr6 49838020 49838216 -139441338 + AluSq SINE Alu 121 313 0 378 186 12 0 chr6 49838483 49838569 -139440985 - HsTC2 DNA Tc2 -1811 87 1 328 342 40 13 chr6 49838720 49838869 -139440685 + L2 LINE L2 3118 3270 -43 2226 102 3 3 chr6 49840027 49840340 -139439214 - AluSq SINE Alu 0 313 1 1938 157 7 10 chr6 49840340 49840509 -139439045 - AluSx SINE Alu -8 304 135 2425 54 3 0 chr6 49840509 49840807 -139438747 - AluY SINE Alu -12 299 1 1938 157 7 10 chr6 49840807 49840942 -139438612 - AluSx SINE Alu -177 135 1 2239 100 3 0 chr6 49840949 49841249 -139438305 - AluSp SINE Alu -12 301 1 490 330 39 11 chr6 49841611 49841790 -139437764 - MIR SINE MIR -32 230 47 2314 66 7 10 chr6 49842000 49842304 -139437250 + AluY SINE Alu 1 303 -8 1919 143 0 7 chr6 49842338 49842632 -139436922 + AluJo SINE Alu 6 297 -15 249 285 109 80 chr6 49844042 49844179 -139435375 + MIR SINE MIR 108 248 -14 617 227 87 13 chr6 49845394 49845544 -139434010 - MIR SINE MIR -73 189 29 299 290 56 19 chr6 49845565 49845672 -139433882 + MIR SINE MIR 17 127 -81 335 273 93 25 chr6 49850316 49850477 -139429077 - L3 LINE CR1 -131 1446 1275 1957 150 0 3 chr6 49850499 49850799 -139428755 - AluSx SINE Alu -13 299 1 1708 122 8 4 chr6 49850903 49851157 -139428397 - AluSx SINE Alu -13 299 45 2541 43 0 0 chr6 49851164 49851467 -139428087 - AluY SINE Alu -8 303 1 1782 164 0 22 chr6 49851955 49852266 -139427288 + AluJb SINE Alu 1 304 -8 294 125 0 0 chr6 49853040 49853088 -139426466 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 2482 62 0 0 chr6 49853878 49854187 -139425367 - AluSc SINE Alu 0 309 1 2116 104 3 10 chr6 49854297 49854605 -139424949 - AluSx SINE Alu -6 306 1 990 80 0 15 chr6 49854605 49854742 -139424812 - AluSq/x SINE Alu -177 135 1 359 289 98 41 chr6 49855679 49855945 -139423609 + L2 LINE L2 2473 2753 -561 303 252 272 0 chr6 49856001 49856104 -139423450 + L2 LINE L2 3179 3309 -4 2251 86 3 0 chr6 49856622 49856924 -139422630 - AluSx SINE Alu -9 303 1 305 360 143 0 chr6 49856927 49857074 -139422480 + L3 LINE CR1 587 754 -823 2040 94 35 3 chr6 49857707 49857993 -139421561 - AluSx SINE Alu -17 295 1 245 391 103 0 chr6 49858182 49858425 -139421129 + L2 LINE L2 2042 2309 -1005 520 207 291 6 chr6 49858500 49858679 -139420875 - MIR SINE MIR -21 241 12 384 294 84 70 chr6 49858793 49859150 -139420404 - L1MC4a LINE L1 -1764 6044 5683 1970 103 18 7 chr6 49860331 49860612 -139418942 - AluSx SINE Alu -21 291 8 531 243 137 44 chr6 49860933 49861159 -139418395 + L1ME3A LINE L1 5896 6142 -28 708 171 51 0 chr6 49861198 49861315 -139418239 + FLAM_A SINE Alu 4 126 -7 2079 93 13 20 chr6 49861942 49862242 -139417312 - AluSg SINE Alu -10 300 3 2074 112 10 0 chr6 49862244 49862540 -139417014 - AluSp SINE Alu -14 299 1 2246 96 3 0 chr6 49862774 49863075 -139416479 - AluSp SINE Alu -10 303 2 2183 100 0 0 chr6 49863415 49863706 -139415848 - AluSx SINE Alu -21 291 1 2209 89 0 3 chr6 49863949 49864242 -139415312 + AluSg SINE Alu 4 295 -15 1674 171 32 0 chr6 49865015 49865296 -139414258 - AluJb SINE Alu -22 290 1 218 213 33 0 chr6 49867001 49867062 -139412492 - MIR SINE MIR -120 142 80 2223 105 0 0 chr6 49869258 49869562 -139409992 + AluSx SINE Alu 1 304 -8 189 356 0 0 chr6 49869563 49869622 -139409932 - MIR SINE MIR -105 103 45 610 257 219 0 chr6 49872964 49873174 -139406380 + MIR SINE MIR 3 258 -4 723 107 18 27 chr6 49873290 49873402 -139406152 - HY1 scRNA scRNA -1 111 1 691 142 0 75 chr6 49873436 49873570 -139405984 - AluSg/x SINE Alu 0 309 186 1038 125 56 6 chr6 49873582 49873742 -139405812 + AluSg/x SINE Alu 134 301 -11 687 142 0 9 chr6 49873749 49873855 -139405699 - FLAM_C SINE Alu -38 105 1 2271 90 3 0 chr6 49874971 49875271 -139404283 - AluSp SINE Alu -12 301 1 2413 74 0 0 chr6 49879527 49879825 -139399729 - AluY SINE Alu -13 298 1 232 381 42 36 chr6 49881080 49881248 -139398306 - L2 LINE L2 0 3272 3104 1919 128 21 0 chr6 49881450 49881739 -139397815 + AluJb SINE Alu 1 295 -17 263 250 172 0 chr6 49881758 49881886 -139397668 + MIR SINE MIR 113 262 0 267 149 0 0 chr6 49882037 49882092 -139397462 - AluJb SINE Alu 0 302 254 929 172 65 6 chr6 49882115 49882284 -139397270 - AluJb SINE Alu -133 179 1 2072 74 56 7 chr6 49882425 49882709 -139396845 - AluSg1 SINE Alu -11 298 1 1457 161 119 0 chr6 49882739 49883000 -139396554 + AluJo SINE Alu 1 292 -20 435 19 0 0 chr6 49884325 49884377 -139395177 + (TG)n Simple_repeat Simple_repeat 2 53 0 2232 112 0 0 chr6 49885136 49885441 -139394113 - AluSx SINE Alu -7 305 1 2248 100 0 10 chr6 49886003 49886312 -139393242 - AluSq SINE Alu -1 312 7 2049 117 10 7 chr6 49886578 49886878 -139392676 - AluSx SINE Alu -11 301 1 1529 152 0 0 chr6 49888382 49888619 -139390935 + AluSx SINE Alu 1 237 -75 7955 10 0 0 chr6 49988619 49989918 -139289636 + L1PA2 LINE L1 4854 6152 -3 313 302 35 10 chr6 49989924 49990138 -139289416 + L1MDa LINE L1 1711 2024 -877 267 373 85 0 chr6 49990252 49990370 -139289184 + L2 LINE L2 2934 3061 -252 596 190 168 89 chr6 49990797 49991203 -139288351 - Charlie5 DNA MER1_type 0 2624 2187 * 1007 190 97 34 chr6 49991202 49991471 -139288083 - Charlie5 DNA MER1_type -2326 286 1 397 287 92 73 chr6 49991524 49991935 -139287619 + MLT1L LTR MaLR 197 615 0 316 231 73 3 chr6 49992784 49992917 -139286637 - L1ME4a LINE L1 -3 6050 1198 462 325 103 73 chr6 49994756 49995553 -139284001 + L2 LINE L2 2432 3272 0 208 130 43 0 chr6 49995605 49995651 -139283903 + CT-rich Low_complexity Low_complexity 2 49 0 6846 227 44 49 chr6 49995731 49998958 -139280596 + L1M4b LINE L1 1 3202 -3755 946 112 0 0 chr6 49998958 49999092 -139280462 - L1PA13 LINE L1 -11 6152 6019 6846 227 44 49 chr6 49999092 49999501 -139280053 + L1M4b LINE L1 3202 3611 -3346 325 313 20 0 chr6 50001451 50001598 -139277956 + L2 LINE L2 1759 1908 -1406 2266 89 3 49 chr6 50002242 50002569 -139276985 - AluSp SINE Alu -1 312 1 219 147 0 0 chr6 50003852 50003886 -139275668 + MIR SINE MIR 219 252 -10 395 241 52 109 chr6 50004473 50004647 -139274907 + MIR SINE MIR 28 191 -71 2836 63 16 11 chr6 50005228 50005606 -139273948 + L1PA10 LINE L1 5789 6168 0 191 279 0 51 chr6 50006366 50006445 -139273109 - L2 LINE L2 -13 3259 3185 968 282 56 37 chr6 50006466 50006930 -139272624 + L1MC4a LINE L1 5357 5829 -1979 2354 91 0 3 chr6 50006964 50007272 -139272282 + AluSc SINE Alu 1 307 -2 338 188 0 59 chr6 50007280 50007381 -139272173 - L1MA9 LINE L1 -38 6274 6180 4706 94 9 0 chr6 50007432 50008101 -139271453 - L1PB1 LINE L1 -1 6150 5476 9287 191 25 3 chr6 50008107 50010456 -139269098 - L1P5 LINE L1 -618 5533 3133 327 279 65 68 chr6 50010449 50010771 -139268783 + L1MC4a LINE L1 5851 6171 -1637 * 315 0 0 0 chr6 50011390 50011425 -139268129 + (CA)n Simple_repeat Simple_repeat 1 35 0 276 279 70 44 chr6 50012100 50012258 -139267296 + MER117 DNA MER1_type 36 197 0 291 289 97 18 chr6 50012264 50012378 -139267176 - MIR SINE MIR -70 138 16 185 338 139 46 chr6 50013261 50013412 -139266142 - L2 LINE L2 -4 3268 3104 196 276 172 30 chr6 50013866 50014000 -139265554 - L2 LINE L2 -410 2904 2752 200 246 145 0 chr6 50014420 50014489 -139265065 - MIR SINE MIR -111 151 73 495 311 123 18 chr6 50014701 50014929 -139264625 + L2 LINE L2 3032 3283 -30 984 195 51 19 chr6 50015203 50015418 -139264136 - MIR SINE MIR -17 245 24 1521 264 69 37 chr6 50015439 50015977 -139263577 + MLT1H1 LTR MaLR 1 555 0 24 53 0 0 chr6 50016496 50016534 -139263020 + AT_rich Low_complexity Low_complexity 1 38 0 763 252 128 16 chr6 50016650 50016971 -139262583 + LTR16A LTR ERVL 30 386 -64 225 0 0 0 chr6 50017374 50017399 -139262155 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 433 240 89 0 chr6 50017416 50017562 -139261992 + MER112 DNA MER1_type 87 245 -15 437 330 130 54 chr6 50017750 50018065 -139261489 + L2 LINE L2 2926 3264 -8 672 252 99 65 chr6 50020356 50020928 -139258626 + MLT1G1 LTR MaLR 1 551 -4 448 312 75 42 chr6 50020941 50021414 -139258140 + MLT1G1-int LTR MaLR 3 605 -766 533 198 24 156 chr6 50022602 50022769 -139256785 - MIR3 SINE MIR -10 198 54 271 180 33 0 chr6 50022786 50022847 -139256707 - L2 LINE L2 0 3272 3210 225 209 0 0 chr6 50024988 50025031 -139254523 + MER103 DNA DNA 2 44 -122 285 252 9 104 chr6 50025740 50025855 -139253699 - MIR SINE MIR -3 259 156 269 250 0 79 chr6 50027378 50027454 -139252100 - MER5A DNA MER1_type -3 186 117 994 209 43 19 chr6 50027881 50028092 -139251462 - MER58A DNA MER1_type -8 216 1 31 0 0 0 chr6 50028102 50028133 -139251421 + AT_rich Low_complexity Low_complexity 1 31 0 393 355 84 52 chr6 50028454 50028801 -139250753 - L2 LINE L2 -1 3271 2914 315 301 0 18 chr6 50028907 50029020 -139250534 + LTR33 LTR ERVL 391 501 -20 664 281 47 10 chr6 50029928 50030120 -139249434 + MIR SINE MIR 63 261 -1 1160 163 37 19 chr6 50030327 50030542 -139249012 + L1PA11 LINE L1 10 228 -7353 24133 157 11 17 chr6 50030544 50035919 -139243635 + L1PA11 LINE L1 1480 7612 0 533 147 10 88 chr6 50035922 50036024 -139243530 + MER21B LTR ERV1 13 106 -757 * 1768 225 49 32 chr6 50036022 50036726 -139242828 + MER21B LTR ERV1 19 811 -52 252 0 0 0 chr6 50036994 50037022 -139242532 + (TTTCC)n Simple_repeat Simple_repeat 1 28 0 819 64 0 0 chr6 50037022 50037132 -139242422 + (TTCC)n Simple_repeat Simple_repeat 1 110 0 319 169 13 13 chr6 50037241 50037318 -139242236 + CT-rich Low_complexity Low_complexity 4 80 0 295 198 0 31 chr6 50037312 50037408 -139242146 + C-rich Low_complexity Low_complexity 1 93 0 * 209 229 0 21 chr6 50037410 50037458 -139242096 + T-rich Low_complexity Low_complexity 3 49 0 16464 128 17 29 chr6 50037627 50039465 -139240089 + L1P LINE L1 11 1807 -4339 2354 97 3 0 chr6 50039465 50039775 -139239779 - AluY SINE Alu 0 311 1 16464 128 17 29 chr6 50039775 50040591 -139238963 + L1P LINE L1 1807 2632 -3514 7435 61 4 8 chr6 50040592 50041495 -139238059 + L1PA6 LINE L1 5255 6154 0 506 261 69 48 chr6 50042286 50042508 -139237046 - MIR SINE MIR -27 235 14 1301 236 202 14 chr6 50042790 50043231 -139236323 + MER69 DNA AcHobo 12 535 -691 1328 175 106 47 chr6 50043237 50043597 -139235957 + MER69 DNA AcHobo 2146 2526 0 262 271 104 35 chr6 50045189 50045333 -139234221 + L1MC/D LINE L1 5746 5899 -1909 1229 169 77 0 chr6 50045337 50045544 -139234010 + MER46A DNA MER2_type 14 236 0 207 164 55 73 chr6 50045569 50045624 -139233930 + L2 LINE L2 3219 3272 0 305 177 57 28 chr6 50045706 50045847 -139233707 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 37 69 0 0 chr6 50045853 50045925 -139233629 + AT_rich Low_complexity Low_complexity 1 72 0 252 0 0 0 chr6 50049087 50049115 -139230439 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2121 115 3 10 chr6 50049122 50049436 -139230118 + AluSq SINE Alu 1 312 -1 732 195 43 22 chr6 50049577 50049762 -139229792 - MER53 DNA DNA 0 189 1 605 314 46 41 chr6 50051239 50051627 -139227927 + L2 LINE L2 102 491 -2823 233 301 81 24 chr6 50051767 50051890 -139227664 + L2 LINE L2 631 760 -2554 504 331 119 58 chr6 50051902 50053029 -139226525 + L2 LINE L2 1802 3038 -234 468 0 0 0 chr6 50053029 50053081 -139226473 + (TA)n Simple_repeat Simple_repeat 2 53 0 504 331 119 58 chr6 50053081 50053332 -139226222 + L2 LINE L2 3038 3272 0 219 36 0 0 chr6 50053506 50053534 -139226020 + (TG)n Simple_repeat Simple_repeat 1 28 0 315 113 0 0 chr6 50053536 50053589 -139225965 + (GA)n Simple_repeat Simple_repeat 2 54 0 1401 261 45 24 chr6 50053834 50054256 -139225298 + LTR16A LTR ERVL 16 446 -4 894 206 0 9 chr6 50054530 50054735 -139224819 - AluJb SINE Alu -16 296 3 1749 98 5 0 chr6 50054856 50055080 -139224474 + AluSq SINE Alu 1 225 -88 738 105 0 0 chr6 50055080 50055233 -139224321 + AluSg/x SINE Alu 188 340 0 5356 141 19 24 chr6 50057217 50058139 -139221415 - L1MA7 LINE L1 0 6291 5374 2761 193 42 40 chr6 50058128 50058888 -139220666 + L1 LINE L1 4511 5330 -816 * 2403 79 0 3 chr6 50058888 50059180 -139220374 + AluY SINE Alu 1 291 -20 2761 193 42 40 chr6 50059180 50059222 -139220332 + L1 LINE L1 5330 5370 -776 197 391 35 9 chr6 50059224 50059339 -139220215 + L2 LINE L2 2939 3056 -216 227 250 146 0 chr6 50061608 50061704 -139217850 + MIR SINE MIR 132 241 -21 239 196 0 18 chr6 50061733 50061789 -139217765 + L2 LINE L2 3257 3311 -2 213 94 0 0 chr6 50061790 50061822 -139217732 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 45080 38 0 9 chr6 50062402 50068614 -139210940 + L1PA3 LINE L1 1 6155 0 2264 102 0 3 chr6 50068732 50069026 -139210528 - AluSg SINE Alu -17 293 1 394 291 158 42 chr6 50070896 50071257 -139208297 - L2 LINE L2 0 3313 2911 454 185 12 0 chr6 50071290 50071371 -139208183 + MER20 DNA MER1_type 135 216 -3 579 303 8 75 chr6 50071372 50071626 -139207928 - L2 LINE L2 -403 2911 2675 198 252 53 5 chr6 50072213 50072287 -139207267 - MIR SINE MIR -116 92 15 25 0 0 0 chr6 50073630 50073655 -139205899 + AT_rich Low_complexity Low_complexity 1 25 0 238 312 152 41 chr6 50075352 50075859 -139203695 + L2 LINE L2 1146 1708 -1606 2153 139 0 0 chr6 50075927 50076228 -139203326 + AluSx SINE Alu 1 301 -11 273 208 167 0 chr6 50077178 50077250 -139202304 - L1ME LINE L1 -299 5822 5739 820 252 29 10 chr6 50078701 50078907 -139200647 - MIR SINE MIR 0 262 53 205 171 0 24 chr6 50079330 50079371 -139200183 + GA-rich Low_complexity Low_complexity 4 43 0 1655 98 8 0 chr6 50080310 50080556 -139198998 - L1MA4 LINE L1 -477 5823 5576 2685 139 17 11 chr6 50080556 50081020 -139198534 + L1MA4 LINE L1 5823 6291 -9 194 272 74 25 chr6 50081166 50081247 -139198307 + MIR SINE MIR 76 160 -102 344 262 191 14 chr6 50081329 50081470 -139198084 + MER5A DNA MER1_type 24 189 0 199 359 48 0 chr6 50081574 50081677 -139197877 - MIR SINE MIR -6 256 149 399 344 60 6 chr6 50081753 50081936 -139197618 - MIR SINE MIR -50 212 20 2287 117 0 3 chr6 50085054 50085361 -139194193 + AluSx SINE Alu 1 306 -6 207 242 0 0 chr6 50086429 50086491 -139193063 + (TA)n Simple_repeat Simple_repeat 1 62 0 30 45 0 0 chr6 50087219 50087263 -139192291 + AT_rich Low_complexity Low_complexity 1 44 0 33 43 0 0 chr6 50087446 50087493 -139192061 + AT_rich Low_complexity Low_complexity 1 47 0 191 288 175 12 chr6 50089066 50089146 -139190408 - L2 LINE L2 -3 3310 3218 446 138 9 92 chr6 50089335 50089444 -139190110 + MER53 DNA DNA 90 189 0 266 211 39 0 chr6 50089808 50089860 -139189694 + MIR SINE MIR 96 149 -59 2106 120 3 20 chr6 50090741 50091040 -139188514 - AluSx SINE Alu -18 294 1 203 345 0 84 chr6 50092048 50092167 -139187387 + MIR SINE MIR 151 259 -3 372 224 75 29 chr6 50092276 50092339 -139187215 - L1ME4a LINE L1 -2 6119 6060 1817 147 17 23 chr6 50092339 50092638 -139186916 + AluSx SINE Alu 1 297 -15 372 224 75 29 chr6 50092638 50092748 -139186806 - L1ME4a LINE L1 -61 6060 5938 196 172 35 0 chr6 50092853 50092911 -139186643 + (TA)n Simple_repeat Simple_repeat 2 61 0 238 155 333 12 chr6 50092964 50093048 -139186506 - L1ME4a LINE L1 -388 5733 5623 333 266 188 13 chr6 50093191 50093345 -139186209 - L1ME4a LINE L1 -580 5541 5361 21 0 0 0 chr6 50094659 50094680 -139184874 + AT_rich Low_complexity Low_complexity 1 21 0 369 313 33 20 chr6 50096549 50096699 -139182855 - MIR SINE MIR -1 261 110 246 339 46 64 chr6 50096719 50096828 -139182726 - MIR SINE MIR -74 134 28 2508 57 0 0 chr6 50096991 50097290 -139182264 - AluY SINE Alu -12 299 1 552 295 104 31 chr6 50097421 50097709 -139181845 - L2 LINE L2 -4 3309 3001 2298 118 0 6 chr6 50097920 50098234 -139181320 - AluSq SINE Alu -1 312 1 290 65 0 22 chr6 50098329 50098375 -139181179 + (TC)n Simple_repeat Simple_repeat 1 45 0 189 230 14 122 chr6 50099239 50099313 -139180241 + L2 LINE L2 3207 3272 0 469 258 33 39 chr6 50099569 50099751 -139179803 - L2 LINE L2 -814 2500 2320 2385 119 19 24 chr6 50099932 50100309 -139179245 + THE1C LTR MaLR 1 375 0 755 219 61 10 chr6 50100816 50101012 -139178542 + L2 LINE L2 3108 3313 0 216 368 0 13 chr6 50101481 50101557 -139177997 - MIR3 SINE MIR -24 184 110 195 220 0 0 chr6 50101659 50101709 -139177845 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 203 273 0 0 chr6 50101789 50101833 -139177721 + L2 LINE L2 3251 3294 -19 198 0 0 0 chr6 50102043 50102065 -139177489 + (T)n Simple_repeat Simple_repeat 1 22 0 405 336 54 20 chr6 50103190 50103339 -139176215 + L2 LINE L2 3118 3271 -1 327 287 88 82 chr6 50103701 50104453 -139175101 - L1MEd LINE L1 -788 1702 898 2460 65 3 3 chr6 50104647 50104953 -139174601 - AluY SINE Alu -5 306 1 2203 79 32 0 chr6 50105516 50105793 -139173761 - AluSp SINE Alu -13 300 15 1107 247 116 19 chr6 50105813 50106278 -139173276 + LTR33A LTR ERVL 8 517 -6 2197 87 17 17 chr6 50107713 50108013 -139171541 - AluSc SINE Alu -9 300 1 1236 296 84 15 chr6 50108195 50109894 -139169660 - L1ME3A LINE L1 -223 5930 4107 228 248 40 30 chr6 50109970 50110071 -139169483 - L1 LINE L1 -2205 3924 3823 2190 101 40 0 chr6 50110541 50110839 -139168715 - AluSq SINE Alu -3 310 1 263 304 11 11 chr6 50110855 50110947 -139168607 - L1ME3A LINE L1 -5562 557 466 289 195 13 13 chr6 50111202 50111279 -139168275 - L1ME3A LINE L1 -5960 159 83 2252 101 0 40 chr6 50111772 50112098 -139167456 - AluSp SINE Alu 0 313 1 243 0 0 0 chr6 50112519 50112546 -139167008 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 330 26 0 0 chr6 50113055 50113094 -139166460 + (T)n Simple_repeat Simple_repeat 1 39 0 1967 130 29 13 chr6 50113523 50113830 -139165724 + AluSx SINE Alu 1 312 0 905 269 13 13 chr6 50113991 50114229 -139165325 + MIR SINE MIR 20 257 -5 22 0 0 0 chr6 50114242 50114264 -139165290 + AT_rich Low_complexity Low_complexity 1 22 0 1996 128 43 12 chr6 50114535 50114864 -139164690 - MER1B DNA MER1_type 0 339 1 1004 251 182 9 chr6 50115235 50115691 -139163863 + MLT1H1 LTR MaLR 32 545 -10 2175 149 0 3 chr6 50115737 50116046 -139163508 - AluSx SINE Alu -4 308 1 283 278 0 0 chr6 50117053 50117125 -139162429 + MLT1K LTR MaLR 161 232 -356 280 240 154 39 chr6 50117240 50117344 -139162210 + MLT1K LTR MaLR 471 586 -2 2160 123 0 16 chr6 50117369 50117679 -139161875 - AluSx SINE Alu -7 305 1 1328 254 62 56 chr6 50118860 50119325 -139160229 - L2 LINE L2 -5 3308 2841 5722 193 41 65 chr6 50119399 50119843 -139159711 - MER45R DNA AcHobo 0 1581 1128 1495 102 25 4 chr6 50119843 50120087 -139159467 - L1MA2 LINE L1 0 6304 6056 5722 193 41 65 chr6 50120087 50120549 -139159005 - MER45R DNA AcHobo -453 1128 657 2017 110 53 3 chr6 50120549 50120831 -139158723 - AluSx SINE Alu -16 296 1 5722 193 41 65 chr6 50120831 50121483 -139158071 - MER45R DNA AcHobo -924 657 59 472 198 12 0 chr6 50121503 50121589 -139157965 - L2 LINE L2 -512 2802 2716 589 133 0 0 chr6 50122440 50122523 -139157031 - AluJ/FLAM SINE Alu -219 93 11 253 245 0 0 chr6 50122584 50122633 -139156921 + L2 LINE L2 3221 3269 -3 388 331 32 0 chr6 50122976 50123100 -139156454 - L2 LINE L2 -1320 1994 1867 435 306 60 15 chr6 50123141 50123327 -139156227 + MIR SINE MIR 21 211 -51 22 0 0 0 chr6 50123343 50123365 -139156189 + AT_rich Low_complexity Low_complexity 1 22 0 667 243 31 125 chr6 50124010 50124168 -139155386 - MIR SINE MIR -1 261 141 2194 116 3 0 chr6 50124168 50124462 -139155092 + AluSx SINE Alu 1 295 -17 667 243 31 125 chr6 50124462 50124591 -139154963 - MIR SINE MIR -121 141 1 390 250 0 0 chr6 50124715 50124799 -139154755 - MER45 DNA AcHobo -956 84 1 1006 126 126 0 chr6 50124994 50125161 -139154393 - MER5A DNA MER1_type -1 188 1 344 286 29 29 chr6 50125356 50125461 -139154093 - L2 LINE L2 -10 3303 3199 1171 258 40 0 chr6 50125464 50125790 -139153764 + LTR16C LTR ERVL 141 479 -12 486 153 17 67 chr6 50126791 50127082 -139152472 - L1MD2 LINE L1 -18 6735 2254 1393 207 39 82 chr6 50127107 50127522 -139152032 - L1MD2 LINE L1 -6126 414 18 333 340 69 5 chr6 50127565 50127768 -139151786 - MIR SINE MIR -13 249 38 2134 126 0 40 chr6 50129056 50129404 -139150150 - MER1B DNA MER1_type -3 334 1 298 295 39 91 chr6 50130208 50130622 -139148932 + HAL1b LINE L1 373 111 -1237 1571 141 47 19 chr6 50130622 50130878 -139148676 + AluJo SINE Alu 38 300 -12 298 295 39 91 chr6 50130878 50131267 -139148287 + HAL1b LINE L1 110 518 -830 911 194 0 12 chr6 50131279 50131439 -139148115 - AluJo SINE Alu -89 223 66 27 49 0 0 chr6 50131592 50131633 -139147921 + AT_rich Low_complexity Low_complexity 1 41 0 181 73 24 49 chr6 50131718 50131759 -139147795 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 343 333 64 23 chr6 50131960 50132224 -139147330 + L1M4 LINE L1 2139 2413 -3733 412 165 48 58 chr6 50132311 50132414 -139147140 - L2 LINE L2 -69 3244 3143 909 80 0 0 chr6 50132414 50132526 -139147028 + AluSg1 SINE Alu 1 112 -197 2042 63 4 11 chr6 50132526 50132797 -139146757 + L1PA6 LINE L1 5884 6152 -2 635 255 90 5 chr6 50132797 50132997 -139146557 - L2 LINE L2 -165 3148 2932 991 217 134 25 chr6 50133028 50133342 -139146212 - L2 LINE L2 -1256 2058 1711 330 281 34 24 chr6 50134161 50134298 -139145256 + MIR SINE MIR 13 155 -61 186 43 0 0 chr6 50134316 50134339 -139145215 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 1469 94 10 0 chr6 50135337 50135529 -139144025 - AluSg/x SINE Alu -14 296 103 264 196 0 0 chr6 50136045 50136096 -139143458 - L2 LINE L2 0 3272 3222 356 322 86 13 chr6 50136402 50136554 -139143000 - MIR3 SINE MIR -13 195 33 1818 241 72 66 chr6 50136601 50137586 -139141968 + L2 LINE L2 2328 3313 0 28 29 0 0 chr6 50137650 50137685 -139141869 + AT_rich Low_complexity Low_complexity 1 35 0 2408 96 0 10 chr6 50137776 50138088 -139141466 + AluSx SINE Alu 1 309 -3 1834 164 30 3 chr6 50138293 50138597 -139140957 + AluJb SINE Alu 1 312 0 2381 106 0 10 chr6 50138868 50139180 -139140374 + AluSx SINE Alu 1 309 -3 1072 195 5 15 chr6 50139640 50139840 -139139714 + AluJo SINE Alu 108 305 -7 1049 165 14 58 chr6 50139844 50140122 -139139432 - MER33 DNA MER1_type -69 255 1 239 254 30 15 chr6 50141215 50141282 -139138272 + MIR SINE MIR 52 119 -89 371 327 105 0 chr6 50141421 50141583 -139137971 + MIR SINE MIR 19 197 -65 3331 78 0 15 chr6 50143277 50143736 -139135818 + L1PA7 LINE L1 5701 6152 -2 577 221 76 0 chr6 50143761 50143906 -139135648 + MIR SINE MIR 57 212 -50 2429 72 0 10 chr6 50144001 50144306 -139135248 + AluY SINE Alu 2 303 -8 24 0 0 0 chr6 50145036 50145060 -139134494 + GC_rich Low_complexity Low_complexity 1 24 0 1739 102 20 12 chr6 50145531 50145785 -139133769 + AluJb SINE Alu 1 256 -56 3367 163 127 59 chr6 50146021 50146892 -139132662 + L1MD2 LINE L1 5378 6308 -51 2056 155 0 0 chr6 50146917 50147220 -139132334 - AluJb SINE Alu -9 303 1 2628 191 34 64 chr6 50147221 50148306 -139131248 + L1ME1 LINE L1 5176 6155 -9 588 290 184 51 chr6 50148365 50149030 -139130524 - L2 LINE L2 -830 2484 1732 216 340 96 0 chr6 50149151 50149245 -139130309 - L2 LINE L2 -2204 1110 1008 447 267 37 30 chr6 50149403 50149538 -139130016 + MIR SINE MIR 55 190 -72 236 297 14 0 chr6 50149675 50149749 -139129805 - Charlie8 DNA MER1_type -2 2415 2341 204 40 0 0 chr6 50150242 50150267 -139129287 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 2008 121 50 3 chr6 50150717 50150999 -139128555 + AluSx SINE Alu 1 295 -17 568 339 58 64 chr6 50152247 50153078 -139126476 + L2 LINE L2 2430 3272 0 180 0 0 0 chr6 50153284 50153304 -139126250 + (A)n Simple_repeat Simple_repeat 1 20 0 251 385 211 15 chr6 50153655 50153915 -139125639 + L2 LINE L2 2956 3266 -6 186 270 112 34 chr6 50154043 50154132 -139125422 - L2 LINE L2 -8 3264 3169 562 310 64 0 chr6 50154145 50154348 -139125206 - MIR SINE MIR -35 227 12 266 216 206 10 chr6 50154794 50154896 -139124658 + L1ME LINE L1 5350 5471 -650 271 359 15 15 chr6 50155036 50155167 -139124387 - MER5A DNA MER1_type -46 143 13 23 33 0 0 chr6 50155915 50155945 -139123609 + AT_rich Low_complexity Low_complexity 1 30 0 1859 129 19 38 chr6 50156219 50156537 -139123017 + AluSx SINE Alu 1 312 0 207 0 0 0 chr6 50157573 50157596 -139121958 + (CCA)n Simple_repeat Simple_repeat 1 23 0 404 138 53 11 chr6 50157721 50157815 -139121739 + MER53 DNA DNA 17 114 -75 243 273 13 26 chr6 50157843 50157920 -139121634 - MIR SINE MIR 0 262 187 626 305 40 6 chr6 50158126 50158303 -139121251 + MIR3 SINE MIR 16 198 -10 180 0 0 0 chr6 50160033 50160053 -139119501 + (AATTG)n Simple_repeat Simple_repeat 4 23 0 891 198 6 0 chr6 50160290 50160447 -139119107 + FRAM SINE Alu 1 158 -8 739 174 16 0 chr6 50160785 50160906 -139118648 - MER5B DNA MER1_type -55 123 1 303 259 78 86 chr6 50162797 50162913 -139116641 + MER91B DNA MER1_type 14 128 -62 1679 136 24 3 chr6 50163609 50163896 -139115658 + MER49 LTR ERV1 2 294 -629 381 213 0 18 chr6 50163882 50163998 -139115556 + MER4E LTR ERV1 62 282 -590 * 1040 213 116 19 chr6 50164006 50164325 -139115229 + MER4D LTR ERV1 554 903 0 391 254 136 0 chr6 50165608 50165726 -139113828 - U1 snRNA snRNA -30 135 2 1709 137 0 0 chr6 50166013 50166281 -139113273 - AluSx SINE Alu 0 318 51 222 300 38 12 chr6 50166381 50166461 -139113093 + L2 LINE L2 3232 3313 0 267 307 122 13 chr6 50166526 50166701 -139112853 - L1ME LINE L1 -543 5578 5369 2295 100 0 3 chr6 50166701 50167011 -139112543 + AluSq SINE Alu 1 309 -4 267 307 122 13 chr6 50167011 50167073 -139112481 - L1ME LINE L1 -752 5369 5315 22 56 0 0 chr6 50167095 50167131 -139112423 + AT_rich Low_complexity Low_complexity 1 36 0 479 296 131 26 chr6 50167407 50167759 -139111795 + MLT1J LTR MaLR 31 419 -92 1956 166 44 19 chr6 50169690 50170052 -139109502 + MLT1A2 LTR MaLR 4 374 0 266 332 71 37 chr6 50170647 50170915 -139108639 - L2 LINE L2 -1816 1498 1222 507 298 106 11 chr6 50171289 50171477 -139108077 + MIR SINE MIR 51 256 -6 278 232 313 9 chr6 50171554 50171666 -139107888 - MER5A DNA MER1_type -10 179 34 * 308 277 12 12 chr6 50171604 50171687 -139107867 + MER5B DNA MER1_type 96 178 0 286 182 0 61 chr6 50172260 50172326 -139107228 + L2 LINE L2 3252 3313 0 224 333 91 10 chr6 50172333 50172432 -139107122 + L2 LINE L2 3149 3255 -17 231 245 0 0 chr6 50172800 50172849 -139106705 + (TA)n Simple_repeat Simple_repeat 1 49 0 1149 148 57 17 chr6 50172858 50173064 -139106490 - L1MD2 LINE L1 -2 6357 6140 198 0 0 0 chr6 50173064 50173086 -139106468 + (TG)n Simple_repeat Simple_repeat 2 23 0 1149 148 57 17 chr6 50173086 50173109 -139106445 - L1MD2 LINE L1 -219 6140 6119 741 192 113 30 chr6 50173174 50173377 -139106177 - L1MD2 LINE L1 -183 6176 5957 645 126 0 9 chr6 50173379 50173490 -139106064 - L1MD2 LINE L1 -440 5919 5810 6610 201 18 17 chr6 50173495 50176058 -139103496 - L1MC2 LINE L1 -184 6160 3584 812 238 38 0 chr6 50176080 50176315 -139103239 - L1M4 LINE L1 -1966 4416 4173 26 30 0 0 chr6 50176677 50176710 -139102844 + AT_rich Low_complexity Low_complexity 1 33 0 1682 79 19 5 chr6 50176790 50177005 -139102549 - AluSc SINE Alu -91 218 1 421 345 149 7 chr6 50177432 50177580 -139101974 + MIR3 SINE MIR 16 184 -24 202 318 64 18 chr6 50180976 50181086 -139098468 + MIR SINE MIR 118 232 -30 265 245 0 0 chr6 50181104 50181157 -139098397 + (TTG)n Simple_repeat Simple_repeat 2 54 0 201 308 47 28 chr6 50182259 50182366 -139097188 - MIR SINE MIR -1 261 153 298 300 0 45 chr6 50182824 50182934 -139096620 - MIR3 SINE MIR -5 203 99 338 329 43 7 chr6 50182994 50183134 -139096420 + MIR SINE MIR 2 146 -116 23 68 0 0 chr6 50183936 50183980 -139095574 + AT_rich Low_complexity Low_complexity 1 44 0 2965 38 3 3 chr6 50185376 50185743 -139093811 + L1PA4 LINE L1 5789 6155 0 3393 224 28 26 chr6 50186246 50187076 -139092478 + L1MB7 LINE L1 15 845 -5697 439 248 10 0 chr6 50187102 50187203 -139092351 - L1M4 LINE L1 -4670 1714 1613 * 442 264 0 0 chr6 50187199 50187305 -139092249 + L1MB7 LINE L1 4698 4803 -1841 * 4171 181 34 22 chr6 50187302 50188926 -139090628 + L1MB7 LINE L1 5031 6672 -10 2301 11 0 0 chr6 50189567 50189829 -139089725 - L1P LINE L1 -2319 3827 3566 3199 39 0 0 chr6 50189829 50190211 -139089343 + L1PA5 LINE L1 5763 6146 -8 27 0 0 0 chr6 50190211 50190238 -139089316 + AT_rich Low_complexity Low_complexity 1 27 0 181 315 121 55 chr6 50190425 50190590 -139088964 - L3 LINE CR1 -1 1576 1401 2251 99 3 16 chr6 50191792 50192096 -139087458 - AluSx SINE Alu -12 300 1 2201 92 0 67 chr6 50192100 50192428 -139087126 - AluSx SINE Alu -6 306 1 270 238 150 0 chr6 50192478 50192558 -139086996 + MLT1K LTR MaLR 497 588 0 1249 157 126 20 chr6 50192973 50193252 -139086302 + AluJo SINE Alu 1 306 0 423 0 0 0 chr6 50193809 50193856 -139085698 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 217 340 62 21 chr6 50194082 50194179 -139085375 + L3b LINE CR1 1480 1580 -3 278 139 40 50 chr6 50194547 50194648 -139084906 + (TTATA)n Simple_repeat Simple_repeat 1 100 0 2204 96 11 0 chr6 50196328 50196651 -139082903 + AluSp SINE Alu 2 327 0 352 226 78 21 chr6 50196795 50196928 -139082626 - MIR SINE MIR -61 147 16 394 303 37 83 chr6 50198303 50198627 -139080927 + L2 LINE L2 1394 1702 -1612 709 280 126 54 chr6 50198909 50200026 -139079528 - L1MC4a LINE L1 -747 5399 4628 302 293 32 49 chr6 50200268 50200391 -139079163 + MER102a DNA MER1_type 177 297 -33 190 411 105 18 chr6 50200422 50200755 -139078799 + L2 LINE L2 2607 2968 -346 2469 77 0 6 chr6 50201027 50201340 -139078214 + AluSp SINE Alu 1 311 -2 572 281 94 26 chr6 50203005 50203197 -139076357 - L3b LINE CR1 -46 1537 1333 2703 91 8 3 chr6 50203551 50203924 -139075630 + THE1C LTR MaLR 1 375 0 846 124 0 0 chr6 50204106 50204227 -139075327 + FLAM_C SINE Alu 1 121 -12 25 31 0 0 chr6 50205270 50205302 -139074252 + AT_rich Low_complexity Low_complexity 1 32 0 180 282 26 26 chr6 50205878 50205956 -139073598 + L2 LINE L2 2649 2726 -588 490 198 0 0 chr6 50206707 50206793 -139072761 + FLAM_A SINE Alu 38 123 -19 1597 155 45 0 chr6 50206973 50207237 -139072317 - AluJb SINE Alu -2 310 35 331 191 7 163 chr6 50208074 50208221 -139071333 - L2 LINE L2 -89 3224 3101 17327 135 50 29 chr6 50208849 50211892 -139067662 - Ricksha DNA DNA -8 3238 26 2572 146 26 5 chr6 50211892 50212309 -139067245 + MSTB LTR MaLR 1 426 0 17327 135 50 29 chr6 50212309 50212333 -139067221 - Ricksha DNA DNA -3220 26 4 457 373 8 31 chr6 50212521 50212776 -139066778 - L3 LINE CR1 -15 1562 1314 22 35 0 0 chr6 50212854 50212883 -139066671 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 50212972 50212997 -139066557 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr6 50213084 50213117 -139066437 + AT_rich Low_complexity Low_complexity 1 33 0 1755 134 87 68 chr6 50214385 50214765 -139064789 - Tigger2a DNA MER2_type -47 387 1 303 315 50 55 chr6 50215075 50215256 -139064298 - L2 LINE L2 -17 3296 3117 1996 146 54 32 chr6 50215806 50216231 -139063323 + MER6A DNA MER2_type 2 495 -370 885 142 0 0 chr6 50216231 50216358 -139063196 - FLAM_C SINE Alu -5 128 2 1996 146 54 32 chr6 50216358 50216472 -139063082 + MER6A DNA MER2_type 495 605 0 206 235 188 24 chr6 50216484 50216569 -139062985 - MIR SINE MIR 0 262 164 408 295 167 46 chr6 50216590 50216619 -139062935 - LTR67 LTR ERVL -35 522 498 1479 195 49 46 chr6 50216619 50216988 -139062566 - MLT1A2 LTR MaLR -4 370 1 408 295 167 46 chr6 50216988 50217324 -139062230 - LTR67 LTR ERVL -59 498 113 257 311 92 12 chr6 50217504 50217668 -139061886 + MER112 DNA MER1_type 75 251 -9 245 315 60 55 chr6 50217696 50217896 -139061658 - L2 LINE L2 -673 2641 2441 204 301 0 24 chr6 50218108 50218191 -139061363 + A-rich Low_complexity Low_complexity 5 85 0 790 308 67 39 chr6 50218649 50219039 -139060515 + L3 LINE CR1 473 873 -704 552 304 35 5 chr6 50219053 50219254 -139060300 + L1MEd LINE L1 1 207 -5912 1736 275 59 53 chr6 50219381 50220574 -139058980 + L1MEd LINE L1 413 1732 -758 486 235 17 0 chr6 50221098 50221217 -139058337 + MER46C DNA MER2_type 126 246 -92 349 328 101 4 chr6 50221258 50221505 -139058049 + L1MEd LINE L1 2333 2603 -3526 315 0 0 0 chr6 50221585 50221620 -139057934 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4377 4 0 0 chr6 50221620 50222107 -139057447 - L1HS LINE L1 -11 6144 5658 2754 3 0 0 chr6 50222099 50222405 -139057149 + L1P1 LINE L1 5362 5667 -488 * 240 261 15 15 chr6 50222426 50222491 -139057063 + L3 LINE CR1 1500 1564 -13 190 241 74 19 chr6 50223571 50223625 -139055929 + L2 LINE L2 2932 2988 -325 2436 83 0 6 chr6 50223682 50223994 -139055560 - AluY SINE Alu -1 310 1 2086 134 3 0 chr6 50224084 50224383 -139055171 - AluSx SINE Alu -10 302 3 234 0 0 0 chr6 50225181 50225207 -139054347 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 1314 303 173 30 chr6 50226078 50226259 -139053295 - L2 LINE L2 0 3313 3159 1937 171 0 3 chr6 50226259 50226603 -139052951 - MER7A DNA MER2_type -2 344 4 1314 303 173 30 chr6 50226603 50226657 -139052897 - L2 LINE L2 -154 3159 3114 2314 109 0 0 chr6 50226657 50226950 -139052604 - AluSg SINE Alu -12 298 6 1314 303 173 30 chr6 50226950 50227840 -139051714 - L2 LINE L2 -199 3114 2030 688 319 62 30 chr6 50227898 50228271 -139051283 - LTR16B LTR ERVL -79 385 1 2033 313 50 34 chr6 50228271 50228297 -139051257 - L2 LINE L2 -1280 2034 2010 2156 123 3 13 chr6 50228297 50228433 -139051121 + AluSq SINE Alu 1 137 -176 2092 102 7 3 chr6 50228433 50228718 -139050836 + AluSp SINE Alu 22 307 -6 2156 123 3 13 chr6 50228718 50228890 -139050664 + AluSq SINE Alu 137 306 -7 2033 313 50 34 chr6 50228890 50229810 -139049744 - L2 LINE L2 -1304 2010 1073 504 269 118 21 chr6 50231776 50231962 -139047592 + MIR SINE MIR 7 210 -52 670 274 143 43 chr6 50231962 50232430 -139047124 - LTR33 LTR ERVL 0 521 7 1109 173 12 74 chr6 50232982 50233225 -139046329 + AluJo SINE Alu 85 312 0 1654 175 31 3 chr6 50233300 50233611 -139045943 + AluJb SINE Alu 1 312 0 1543 182 6 59 chr6 50233665 50233989 -139045565 - AluJo SINE Alu -5 307 1 26 64 0 0 chr6 50234059 50234106 -139045448 + AT_rich Low_complexity Low_complexity 1 47 0 942 125 80 6 chr6 50235034 50235210 -139044344 - MER53 DNA DNA 0 189 1 198 218 146 0 chr6 50235499 50235554 -139044000 + L3 LINE CR1 1511 1573 -4 712 108 0 0 chr6 50236139 50236241 -139043313 + AluSc SINE Alu 194 295 -14 656 267 53 10 chr6 50237386 50237592 -139041962 + MLT1J LTR MaLR 1 215 -296 8736 173 25 11 chr6 50237598 50240371 -139039183 + L1PA16 LINE L1 3343 6146 -20 635 280 72 34 chr6 50240396 50240689 -139038865 + MLT1J LTR MaLR 205 508 -3 31 0 0 0 chr6 50240719 50240750 -139038804 + AT_rich Low_complexity Low_complexity 1 31 0 283 278 0 0 chr6 50241299 50241371 -139038183 + MLT1K LTR MaLR 161 232 -356 280 240 154 39 chr6 50241486 50241590 -139037964 + MLT1K LTR MaLR 471 586 -2 2151 123 0 16 chr6 50241615 50241924 -139037630 - AluSx SINE Alu -8 304 1 1328 254 62 56 chr6 50243105 50243570 -139035984 - L2 LINE L2 -5 3308 2841 5725 193 41 65 chr6 50243644 50244088 -139035466 - MER45R DNA AcHobo 0 1581 1128 1495 102 25 4 chr6 50244088 50244332 -139035222 - L1MA2 LINE L1 0 6304 6056 5725 193 41 65 chr6 50244332 50244794 -139034760 - MER45R DNA AcHobo -453 1128 657 2007 110 53 4 chr6 50244794 50245075 -139034479 - AluSx SINE Alu -17 295 1 5725 193 41 65 chr6 50245075 50245727 -139033827 - MER45R DNA AcHobo -924 657 59 472 198 12 0 chr6 50245747 50245833 -139033721 - L2 LINE L2 -512 2802 2716 589 133 0 0 chr6 50246684 50246767 -139032787 - AluJ/FLAM SINE Alu -219 93 11 253 245 0 0 chr6 50246828 50246877 -139032677 + L2 LINE L2 3221 3269 -3 388 331 32 0 chr6 50247223 50247347 -139032207 - L2 LINE L2 -1320 1994 1867 435 306 60 15 chr6 50247388 50247574 -139031980 + MIR SINE MIR 21 211 -51 22 0 0 0 chr6 50247590 50247612 -139031942 + AT_rich Low_complexity Low_complexity 1 22 0 667 243 31 125 chr6 50248257 50248415 -139031139 - MIR SINE MIR -1 261 141 2208 116 3 0 chr6 50248415 50248709 -139030845 + AluSx SINE Alu 1 295 -17 667 243 31 125 chr6 50248709 50248838 -139030716 - MIR SINE MIR -121 141 1 390 250 0 0 chr6 50248962 50249046 -139030508 - MER45 DNA AcHobo -1497 84 1 986 132 126 0 chr6 50249241 50249408 -139030146 - MER5A DNA MER1_type -1 188 1 344 286 29 29 chr6 50249603 50249708 -139029846 - L2 LINE L2 -10 3303 3199 1171 258 40 0 chr6 50249711 50250037 -139029517 + LTR16C LTR ERVL 141 479 -12 486 151 17 67 chr6 50251038 50251329 -139028225 - L1MD2 LINE L1 -18 6735 2254 1393 207 39 82 chr6 50251354 50251769 -139027785 - L1MD2 LINE L1 -6126 414 18 333 340 69 5 chr6 50251812 50252015 -139027539 - MIR SINE MIR -13 249 38 2158 121 0 40 chr6 50253303 50253651 -139025903 - MER1B DNA MER1_type -3 334 1 298 295 39 91 chr6 50254455 50254869 -139024685 + HAL1b LINE L1 373 111 -1237 1571 141 47 19 chr6 50254869 50255125 -139024429 + AluJo SINE Alu 38 300 -12 298 295 39 91 chr6 50255125 50255514 -139024040 + HAL1b LINE L1 110 518 -830 911 194 0 12 chr6 50255526 50255686 -139023868 - AluJo SINE Alu -89 223 66 34 24 0 0 chr6 50255839 50255880 -139023674 + AT_rich Low_complexity Low_complexity 1 41 0 181 73 24 49 chr6 50255965 50256006 -139023548 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 322 333 64 23 chr6 50256207 50256471 -139023083 + L1M4 LINE L1 2139 2413 -3733 412 165 48 58 chr6 50256558 50256661 -139022893 - L2 LINE L2 -69 3244 3143 935 71 0 0 chr6 50256661 50256773 -139022781 + AluSg1 SINE Alu 1 112 -197 2042 63 4 11 chr6 50256773 50257044 -139022510 + L1PA6 LINE L1 5884 6152 -2 639 250 88 10 chr6 50257044 50257248 -139022306 - L2 LINE L2 -165 3148 2929 991 217 134 25 chr6 50257275 50257589 -139021965 - L2 LINE L2 -1256 2058 1711 330 281 34 24 chr6 50258408 50258545 -139021009 + MIR SINE MIR 13 155 -61 186 43 0 0 chr6 50258563 50258586 -139020968 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 1486 93 10 0 chr6 50259584 50259778 -139019776 - AluSg/x SINE Alu -12 298 103 264 196 0 0 chr6 50260294 50260345 -139019209 - L2 LINE L2 0 3272 3222 356 322 86 13 chr6 50260671 50260823 -139018731 - MIR3 SINE MIR -13 195 33 1612 260 79 38 chr6 50260870 50261891 -139017663 + L2 LINE L2 2328 3313 0 28 29 0 0 chr6 50261955 50261990 -139017564 + AT_rich Low_complexity Low_complexity 1 35 0 2390 97 0 10 chr6 50262081 50262392 -139017162 + AluSx SINE Alu 1 308 -4 1826 161 30 7 chr6 50262597 50262902 -139016652 + AluJb SINE Alu 1 312 0 2345 112 0 10 chr6 50263173 50263485 -139016069 + AluSx SINE Alu 1 309 -3 1072 195 5 15 chr6 50263946 50264146 -139015408 + AluJo SINE Alu 108 305 -7 1049 165 14 58 chr6 50264150 50264428 -139015126 - MER33 DNA MER1_type -69 255 1 239 254 30 15 chr6 50265521 50265588 -139013966 + MIR SINE MIR 52 119 -89 371 327 105 0 chr6 50265727 50265889 -139013665 + MIR SINE MIR 19 197 -65 3310 81 0 15 chr6 50267583 50268042 -139011512 + L1PA7 LINE L1 5701 6152 -2 577 221 76 0 chr6 50268067 50268212 -139011342 + MIR SINE MIR 57 212 -50 2440 69 0 10 chr6 50268307 50268610 -139010944 + AluY SINE Alu 2 301 -10 24 0 0 0 chr6 50269340 50269364 -139010190 + GC_rich Low_complexity Low_complexity 1 24 0 1728 106 20 12 chr6 50269835 50270089 -139009465 + AluJb SINE Alu 1 256 -56 3349 163 127 60 chr6 50270325 50271197 -139008357 + L1MD2 LINE L1 5378 6308 -51 2034 158 0 0 chr6 50271222 50271525 -139008029 - AluJb SINE Alu -9 303 1 2660 189 34 64 chr6 50271526 50272612 -139006942 + L1ME1 LINE L1 5176 6155 -9 588 290 184 51 chr6 50272671 50273336 -139006218 - L2 LINE L2 -830 2484 1732 227 337 95 0 chr6 50273457 50273552 -139006002 - L2 LINE L2 -2203 1111 1008 447 267 37 30 chr6 50273710 50273845 -139005709 + MIR SINE MIR 55 190 -72 236 297 14 0 chr6 50273982 50274056 -139005498 - Charlie8 DNA MER1_type -2 2415 2341 204 40 0 0 chr6 50274549 50274574 -139004980 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 2008 121 50 3 chr6 50275024 50275306 -139004248 + AluSx SINE Alu 1 295 -17 555 343 56 64 chr6 50276554 50277386 -139002168 + L2 LINE L2 2430 3272 0 198 0 0 0 chr6 50277592 50277614 -139001940 + (A)n Simple_repeat Simple_repeat 1 22 0 231 361 50 17 chr6 50277965 50278084 -139001470 + L2 LINE L2 2956 3078 -194 1019 270 123 29 chr6 50278282 50278656 -139000898 - LTR16C LTR ERVL 0 491 83 254 200 105 95 chr6 50279784 50279889 -138999665 + L2 LINE L2 3200 3305 -8 1697 230 70 33 chr6 50279893 50280548 -138999006 - L1ME1 LINE L1 -3 6163 5446 * 43738 50 4 4 chr6 50280547 50286709 -138992845 + L1PA4 LINE L1 1 6155 0 1125 187 109 77 chr6 50286707 50286837 -138992717 - L1ME1 LINE L1 -743 5403 5279 * 2332 87 0 3 chr6 50286837 50287136 -138992418 - AluY SINE Alu -13 298 1 1125 187 109 77 chr6 50287136 50287486 -138992068 - L1ME1 LINE L1 -867 5279 4963 198 0 0 0 chr6 50288907 50288929 -138990625 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 263 154 31 62 chr6 50288931 50288996 -138990558 + MLT1H LTR MaLR 487 549 0 451 342 70 8 chr6 50290047 50290290 -138989264 + L3 LINE CR1 1203 1460 -117 2778 149 14 16 chr6 50290647 50291082 -138988472 + Tigger2a DNA MER2_type 1 434 0 26 0 0 0 chr6 50291352 50291378 -138988176 + AT_rich Low_complexity Low_complexity 1 26 0 468 328 89 5 chr6 50291414 50291786 -138987768 - L1MEc LINE L1 -4645 1665 1263 2946 90 0 43 chr6 50291811 50292078 -138987476 - MER4A LTR ERV1 0 664 420 2462 87 0 0 chr6 50292078 50292387 -138987167 - AluY SINE Alu 0 311 3 2946 90 0 43 chr6 50292387 50292541 -138987013 - MER4A LTR ERV1 -244 420 261 436 90 15 15 chr6 50292541 50292608 -138986946 - MER4A LTR ERV1 -566 98 32 347 298 31 98 chr6 50292609 50292935 -138986619 - L1MEc LINE L1 -5034 1085 782 227 163 143 0 chr6 50293043 50293092 -138986462 + MIR SINE MIR 122 177 -85 22 35 0 0 chr6 50293163 50293192 -138986362 + AT_rich Low_complexity Low_complexity 1 29 0 939 286 0 24 chr6 50293344 50293599 -138985955 - MIR SINE MIR -1 261 13 1039 222 156 49 chr6 50293761 50294229 -138985325 - MLT1G LTR MaLR 0 590 73 2040 101 7 17 chr6 50295214 50295512 -138984042 - AluSx SINE Alu -17 295 1 243 0 0 0 chr6 50295756 50295783 -138983771 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3673 108 129 91 chr6 50295902 50296225 -138983329 + MER51B-int LTR ERV1 7051 7360 -456 195 42 0 0 chr6 50296225 50296249 -138983305 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 3673 108 129 91 chr6 50296249 50296662 -138982892 + MER51B-int LTR ERV1 7360 7815 -1 1826 132 118 49 chr6 50296666 50296808 -138982746 + MER51B LTR ERV1 5 136 -241 351 0 0 0 chr6 50296808 50296847 -138982707 + (TG)n Simple_repeat Simple_repeat 2 40 0 2293 59 0 14 chr6 50296847 50297135 -138982419 - AluY SINE Alu -27 284 1 1826 132 118 49 chr6 50297135 50297340 -138982214 + MER51B LTR ERV1 135 377 0 1504 101 14 0 chr6 50297340 50297558 -138981996 - MER41B LTR ERV1 -414 221 1 638 355 57 11 chr6 50298793 50299142 -138980412 + L2 LINE L2 2165 2529 -785 3476 216 60 8 chr6 50299164 50300126 -138979428 - L1ME1 LINE L1 -5 6161 5153 3142 104 9 2 chr6 50300162 50300603 -138978951 - L1PB2 LINE L1 0 6151 5708 1392 261 25 56 chr6 50300790 50301178 -138978376 + LTR16B LTR ERVL 1 400 -64 2384 177 26 19 chr6 50301178 50301601 -138977953 + MSTB LTR MaLR 1 426 0 1392 261 25 56 chr6 50301601 50301613 -138977941 + LTR16B LTR ERVL 400 411 -53 1950 159 0 28 chr6 50301613 50301933 -138977621 - AluSx SINE Alu 0 312 2 1392 261 25 56 chr6 50301933 50302010 -138977544 + LTR16B LTR ERVL 411 464 0 1928 136 10 10 chr6 50302272 50302574 -138976980 - AluSc SINE Alu -7 302 1 180 295 54 62 chr6 50302813 50302942 -138976612 - MER5A DNA MER1_type -15 174 47 510 373 12 12 chr6 50302964 50303219 -138976335 + MIR SINE MIR 7 261 -1 492 253 122 29 chr6 50303563 50303759 -138975795 + MIR SINE MIR 37 250 -12 26 50 0 0 chr6 50304717 50304757 -138974797 + AT_rich Low_complexity Low_complexity 1 40 0 1238 199 15 38 chr6 50304995 50305261 -138974293 + MER89 LTR ERV1 295 554 -5 21 57 0 0 chr6 50305261 50305296 -138974258 + AT_rich Low_complexity Low_complexity 1 35 0 6972 62 8 7 chr6 50305357 50305714 -138973840 - L1PA8A LINE L1 0 6131 5776 213 39 0 0 chr6 50305714 50305740 -138973814 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2304 82 0 0 chr6 50305740 50306020 -138973534 - AluSg SINE Alu -30 280 1 6972 62 8 7 chr6 50306020 50306997 -138972557 - L1PA8A LINE L1 -354 5777 4812 2284 120 0 3 chr6 50307175 50307484 -138972070 + AluSx SINE Alu 1 308 -4 1162 250 188 9 chr6 50307530 50307966 -138971588 - MLT1H1 LTR MaLR -10 545 32 261 246 108 85 chr6 50308461 50308591 -138970963 + MER20B DNA MER1_type 4 136 -647 6040 50 2 20 chr6 50310922 50311764 -138967790 - L1PA5 LINE L1 -691 5463 4638 6058 36 1 0 chr6 50311764 50312435 -138967119 + L1PA5 LINE L1 5470 6142 -12 380 44 131 6 chr6 50312435 50312595 -138966959 + (TA)n Simple_repeat Simple_repeat 1 180 0 198 341 104 52 chr6 50313573 50313784 -138965770 - MIR SINE MIR -17 245 24 446 253 24 66 chr6 50313918 50314084 -138965470 - L3b LINE CR1 -140 1443 1285 210 328 92 45 chr6 50315262 50315597 -138963957 + L2 LINE L2 2557 2907 -407 181 340 0 0 chr6 50315561 50315608 -138963946 + MIR SINE MIR 23 69 -193 * 215 255 0 0 chr6 50315705 50315756 -138963798 + (TA)n Simple_repeat Simple_repeat 1 51 0 2022 151 3 0 chr6 50315782 50316081 -138963473 + AluSx SINE Alu 3 302 -10 803 322 4 4 chr6 50316087 50316329 -138963225 - MIR SINE MIR -17 245 4 21 0 0 0 chr6 50316683 50316704 -138962850 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr6 50317836 50317859 -138961695 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 351 221 73 44 chr6 50318848 50318917 -138960637 - LTR16A1 LTR ERVL 0 457 391 2158 128 0 3 chr6 50318917 50319221 -138960333 + AluSx SINE Alu 1 303 -9 351 221 73 44 chr6 50319221 50319287 -138960267 - LTR16A1 LTR ERVL -66 391 318 206 211 0 0 chr6 50320200 50320238 -138959316 + (ATG)n Simple_repeat Simple_repeat 1 38 0 596 217 22 22 chr6 50320297 50320435 -138959119 - MIR SINE MIR -111 151 14 180 77 0 0 chr6 50320734 50320760 -138958794 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 292 288 0 93 chr6 50321768 50321907 -138957647 + MIR3 SINE MIR 7 132 -76 479 259 113 49 chr6 50322163 50322410 -138957144 + L2 LINE L2 3050 3312 -1 403 256 39 31 chr6 50322558 50322687 -138956867 + MLT1J LTR MaLR 382 511 0 514 218 35 63 chr6 50323489 50323663 -138955891 - MIR3 SINE MIR -4 204 36 349 259 7 167 chr6 50323801 50323862 -138955692 - MIR SINE MIR -12 250 181 2292 101 0 3 chr6 50323862 50324159 -138955395 - AluSg SINE Alu -14 296 1 349 259 7 167 chr6 50324159 50324390 -138955164 - MIR SINE MIR -81 181 5 707 174 61 15 chr6 50324463 50324595 -138954959 + AluJb SINE Alu 1 138 -174 2946 191 62 55 chr6 50324595 50326061 -138953493 - L1M4 LINE L1 -360 6316 3184 259 140 20 0 chr6 50326057 50326107 -138953447 + L1 LINE L1 2368 2418 -3728 * 349 222 23 22 chr6 50326095 50326185 -138953369 + L1 LINE L1 2651 2741 -3405 339 25 0 0 chr6 50326186 50326226 -138953328 + (CA)n Simple_repeat Simple_repeat 2 41 0 983 223 122 60 chr6 50326231 50326260 -138953294 - MLT1A1 LTR MaLR -6 359 333 2352 157 3 0 chr6 50326260 50326605 -138952949 - MER7A DNA MER2_type -1 345 2 983 223 122 60 chr6 50326605 50326911 -138952643 - MLT1A1 LTR MaLR -32 333 3 1474 264 60 11 chr6 50326936 50327488 -138952066 - L1ME LINE L1 -3494 3150 2608 2057 238 66 51 chr6 50327540 50328299 -138951255 - L1ME LINE L1 -4704 1942 1231 2321 89 0 0 chr6 50328299 50328602 -138950952 - AluY SINE Alu -8 303 1 2057 238 66 51 chr6 50328602 50328881 -138950673 - L1ME LINE L1 -5415 1231 958 425 267 0 15 chr6 50328972 50329103 -138950451 - L1ME LINE L1 -6335 207 79 441 257 13 33 chr6 50330063 50330215 -138949339 + MER103 DNA DNA 13 161 -5 389 255 53 0 chr6 50330471 50330565 -138948989 + L2 LINE L2 3143 3241 -31 396 71 0 0 chr6 50331137 50331193 -138948361 + (TG)n Simple_repeat Simple_repeat 1 56 0 235 276 105 8 chr6 50332073 50332206 -138947348 - MIR SINE MIR -73 189 23 1909 168 24 74 chr6 50332814 50333232 -138946322 - MLT2D LTR ERVL -17 397 1 230 214 54 0 chr6 50333263 50333319 -138946235 - MIR SINE MIR -168 94 36 189 388 112 13 chr6 50333678 50333830 -138945724 + L3b LINE CR1 1406 1572 -11 1568 178 0 17 chr6 50333936 50334228 -138945326 + AluJo SINE Alu 1 287 -25 2338 51 0 3 chr6 50334353 50334682 -138944872 - AluY SINE Alu 0 311 1 289 271 28 28 chr6 50334691 50334798 -138944756 - MLT1J LTR MaLR -293 218 112 186 43 0 0 chr6 50335730 50335753 -138943801 + (A)n Simple_repeat Simple_repeat 1 23 0 30 27 0 0 chr6 50335884 50335921 -138943633 + AT_rich Low_complexity Low_complexity 1 37 0 185 146 21 0 chr6 50336776 50336824 -138942730 + (TG)n Simple_repeat Simple_repeat 2 50 0 394 329 109 19 chr6 50339488 50339698 -138939856 + MIR SINE MIR 20 248 -14 198 0 0 0 chr6 50340722 50340744 -138938810 + (A)n Simple_repeat Simple_repeat 1 22 0 347 376 119 5 chr6 50340821 50341023 -138938531 + MIR SINE MIR 4 228 -34 805 221 41 6 chr6 50341609 50341781 -138937773 + MER5B DNA MER1_type 1 178 0 484 276 41 0 chr6 50341852 50341975 -138937579 + L2 LINE L2 3186 3313 0 1097 227 0 0 chr6 50342017 50342211 -138937343 + MER58A DNA MER1_type 31 224 0 619 287 33 17 chr6 50342260 50342441 -138937113 + MIR SINE MIR 2 185 -77 221 270 100 30 chr6 50342792 50342892 -138936662 + L2 LINE L2 2929 3035 -237 940 288 77 33 chr6 50344644 50345071 -138934483 + LTR16A LTR ERVL 1 446 -4 660 226 45 7 chr6 50345071 50345226 -138934328 + MIR SINE MIR 66 226 -36 854 222 83 48 chr6 50346385 50346615 -138932939 + MIR SINE MIR 18 255 -7 1711 196 89 5 chr6 50346797 50347189 -138932365 - L1ME3A LINE L1 -191 5979 5555 531 299 9 52 chr6 50347355 50347566 -138931988 - MIR SINE MIR -37 225 24 380 254 54 39 chr6 50347793 50347923 -138931631 + MER94 DNA DNA 2 133 -1 247 324 88 0 chr6 50348185 50348287 -138931267 + L2 LINE L2 3203 3313 0 285 29 0 0 chr6 50348429 50348463 -138931091 + (TG)n Simple_repeat Simple_repeat 1 34 0 300 359 136 5 chr6 50348543 50348749 -138930805 + MIR SINE MIR 28 260 -2 215 168 133 124 chr6 50348759 50348872 -138930682 - L2 LINE L2 -6 3266 3153 790 245 120 9 chr6 50349097 50349330 -138930224 + MIR SINE MIR 4 262 0 2145 92 7 0 chr6 50349464 50349758 -138929796 - AluY SINE Alu -15 296 1 887 265 37 55 chr6 50350651 50351107 -138928447 + L1ME LINE L1 5375 5822 -340 1964 138 0 0 chr6 50351427 50351723 -138927831 - AluSx SINE Alu -16 296 1 28 48 0 0 chr6 50351726 50351768 -138927786 + AT_rich Low_complexity Low_complexity 1 42 0 235 204 20 0 chr6 50352073 50352122 -138927432 + HSMAR1 DNA Mariner 1238 1287 0 669 294 107 19 chr6 50352880 50353189 -138926365 - LTR33 LTR ERVL -2 519 184 534 253 75 114 chr6 50353754 50354209 -138925345 - MLT1J LTR MaLR -74 437 1 784 298 36 10 chr6 50354477 50354786 -138924768 + LTR16A1 LTR ERVL 139 455 -2 351 0 0 0 chr6 50355017 50355056 -138924498 + (TG)n Simple_repeat Simple_repeat 1 39 0 837 284 47 4 chr6 50356089 50356321 -138923233 - MIR SINE MIR 0 262 21 324 70 0 0 chr6 50356989 50357032 -138922522 + (TG)n Simple_repeat Simple_repeat 2 44 0 1473 84 0 130 chr6 50357885 50358146 -138921408 - MER30 DNA MER1_type 0 230 4 250 357 33 10 chr6 50358344 50358466 -138921088 - MIR SINE MIR -67 141 23 890 219 16 5 chr6 50358860 50359047 -138920507 + MER5A DNA MER1_type 1 189 0 703 301 19 46 chr6 50359159 50359421 -138920133 + MIR SINE MIR 8 262 0 306 0 0 0 chr6 50359494 50359528 -138920026 + (CA)n Simple_repeat Simple_repeat 2 35 0 468 210 30 10 chr6 50360007 50360107 -138919447 - MER5A DNA MER1_type -78 111 10 703 208 127 12 chr6 50360212 50360385 -138919169 - MER20 DNA MER1_type 0 219 27 752 286 38 9 chr6 50361151 50361361 -138918193 - MLT1I LTR MaLR -4 405 190 1928 156 9 21 chr6 50361400 50361727 -138917827 - MLT2D LTR ERVL -2 412 90 780 88 0 0 chr6 50361740 50361842 -138917712 + AluSq/x SINE Alu 2 103 -210 466 200 40 0 chr6 50462400 50462500 -138817054 + MIR SINE MIR 105 208 -54 347 206 262 21 chr6 50462602 50462743 -138816811 + MER5A DNA MER1_type 12 186 -3 399 295 104 12 chr6 50462787 50462960 -138816594 + MIR SINE MIR 51 239 -23 290 274 233 0 chr6 50463486 50463632 -138815922 + MER5A DNA MER1_type 9 188 -1 289 177 32 0 chr6 50463632 50463694 -138815860 - MER5A DNA MER1_type -124 65 2 248 150 0 0 chr6 50463894 50463934 -138815620 + LTR16C LTR ERVL 377 416 -75 264 313 69 30 chr6 50464551 50464682 -138814872 + MIR3 SINE MIR 15 150 -58 343 297 34 0 chr6 50565179 50565297 -138714257 + LTR16C LTR ERVL 1 122 -369 1027 203 129 0 chr6 50565323 50565564 -138713990 + LTR16C LTR ERVL 188 459 -32 1316 196 131 21 chr6 50567149 50567486 -138712068 - MLT1A2 LTR MaLR 0 374 1 1169 248 93 19 chr6 50567505 50567924 -138711630 + LTR33 LTR ERVL 44 493 -28 315 319 116 36 chr6 50567933 50568234 -138711320 + L2 LINE L2 2649 2973 -341 475 292 71 38 chr6 50569154 50569394 -138710160 - L1ME3A LINE L1 -242 5928 5681 830 328 66 14 chr6 50569401 50569767 -138709787 - MLT1I LTR MaLR 0 409 25 229 203 51 17 chr6 50569979 50570038 -138709516 + L1P1 LINE L1 5405 5465 -690 253 242 74 11 chr6 50570447 50570542 -138709012 - L1ME3A LINE L1 -1311 4835 4735 269 264 213 27 chr6 50570740 50571069 -138708485 - L1ME3A LINE L1 -1712 4434 4045 1778 229 110 23 chr6 50571143 50571615 -138707939 - LTR40a LTR ERVL 0 519 7 292 295 154 8 chr6 50571701 50572092 -138707462 - L1P LINE L1 -2361 3785 3324 10093 166 97 9 chr6 50572140 50575374 -138704180 - L1MA3 LINE L1 -1 7723 4206 5060 150 47 70 chr6 50575373 50576372 -138703182 - L1MA3 LINE L1 -6573 992 17 * 3771 182 106 17 chr6 50576638 50577794 -138701760 - L1MA4 LINE L1 -43 6257 5003 1209 179 127 2 chr6 50577789 50578165 -138701389 - L1M4 LINE L1 -2569 3577 3134 * 3440 180 116 7 chr6 50578154 50579117 -138700437 - L1M1 LINE L1 -743 5403 4414 1066 155 0 22 chr6 50579117 50579298 -138700256 - AluSx SINE Alu -15 295 119 229 94 0 0 chr6 50579300 50579332 -138700222 - MADE1 DNA Mariner -43 37 6 949 126 0 0 chr6 50579333 50579460 -138700094 - AluSx SINE Alu -186 127 1 3902 187 127 29 chr6 50579461 50580088 -138699466 - L1M1 LINE L1 -1733 4413 3849 2235 126 51 11 chr6 50580088 50580438 -138699116 + THE1B LTR MaLR 1 364 0 3902 187 127 29 chr6 50580438 50580992 -138698562 - L1M1 LINE L1 -2297 3849 3059 763 108 0 0 chr6 50581012 50581114 -138698440 + AluSg/x SINE Alu 181 282 -30 405 194 108 0 chr6 50581147 50581240 -138698314 - L1M1 LINE L1 -3108 3038 2936 2042 259 105 55 chr6 50581610 50583311 -138696243 + L1 LINE L1 8 1751 -4284 1076 226 55 35 chr6 50583307 50583652 -138695902 + L1 LINE L1 4729 5080 -954 * 297 224 276 19 chr6 50585582 50585738 -138693816 + LTR33 LTR ERVL 281 476 -45 1025 259 133 8 chr6 50587413 50587810 -138691744 - MLT1C LTR MaLR 0 467 21 284 240 153 13 chr6 50588635 50588785 -138690769 - L1ME LINE L1 -263 5858 5688 918 230 73 41 chr6 50588878 50588990 -138690564 - L1ME2 LINE L1 -9 6155 6048 1571 146 130 3 chr6 50588990 50589298 -138690256 - MER7A DNA MER2_type 0 346 2 918 230 73 41 chr6 50589298 50589502 -138690052 - L1ME2 LINE L1 -116 6048 5829 1593 186 74 40 chr6 50589505 50589882 -138689672 + MSTD LTR MaLR 1 390 -6 1493 197 78 24 chr6 50590076 50590411 -138689143 + MLT1A1 LTR MaLR 5 357 -8 3549 212 114 22 chr6 50590415 50591952 -138687602 + MLT1A1-int LTR MaLR 2 1735 0 1662 188 91 3 chr6 50591962 50592270 -138687284 + MLT1A1 LTR MaLR 21 355 -10 1804 201 93 63 chr6 50594121 50594659 -138684895 + MLT2B3 LTR ERVL 1 554 0 935 191 114 99 chr6 50596568 50596841 -138682713 - AluJo SINE Alu -27 285 9 588 255 181 44 chr6 50597350 50597621 -138681933 - LTR16C LTR ERVL -3 488 181 291 190 0 0 chr6 50597747 50597805 -138681749 + (TA)n Simple_repeat Simple_repeat 1 58 0 300 145 32 16 chr6 50597805 50597867 -138681687 - L1MCa LINE L1 -4358 2068 2006 180 111 0 0 chr6 50597867 50597894 -138681660 + (CA)n Simple_repeat Simple_repeat 1 27 0 215 263 74 63 chr6 50598497 50598672 -138680882 - L3 LINE CR1 -15 1562 1386 321 318 106 20 chr6 50598792 50598990 -138680564 - MIR SINE MIR -1 261 47 1242 163 190 54 chr6 50599690 50600021 -138679533 - MSTC LTR MaLR 0 428 53 1182 276 110 3 chr6 50600551 50600943 -138678611 - LTR16C LTR ERVL -51 440 7 295 241 78 17 chr6 50601218 50601334 -138678220 - MER58B DNA MER1_type 0 341 219 643 155 357 0 chr6 50601381 50601549 -138678005 + MLT1F LTR MaLR 311 538 -4 370 264 83 21 chr6 50601656 50601800 -138677754 + LTR33 LTR ERVL 26 178 -343 258 261 84 93 chr6 50601872 50601975 -138677579 + LTR33 LTR ERVL 306 408 -113 1753 193 55 6 chr6 50601975 50602323 -138677231 + MLT1A1 LTR MaLR 1 365 0 258 261 84 93 chr6 50602323 50602434 -138677120 + LTR33 LTR ERVL 408 518 -3 328 330 119 10 chr6 50603736 50603930 -138675624 + LTR16A LTR ERVL 158 372 -78 434 311 171 8 chr6 50604795 50605046 -138674508 - LTR16A LTR ERVL -41 409 118 794 272 111 22 chr6 50605100 50605471 -138674083 + LTR33 LTR ERVL 107 510 -11 347 290 34 51 chr6 50605716 50605892 -138673662 - LTR16A1 LTR ERVL -17 440 268 270 252 109 8 chr6 50606109 50606228 -138673326 + L1MB3 LINE L1 2 132 -5759 2557 223 158 25 chr6 50606656 50608209 -138671345 + L1MB3 LINE L1 2286 4092 -1878 * 5318 110 59 5 chr6 50608207 50609024 -138670530 + L1PA10 LINE L1 5308 6168 0 3169 196 190 20 chr6 50609018 50610668 -138668886 + L1MB3 LINE L1 4079 6007 0 * 2443 169 68 98 chr6 50611495 50612087 -138667467 - MER21B LTR ERV1 -281 582 9 1766 220 42 66 chr6 50612146 50612688 -138666866 + LTR26B LTR ERV1 1 529 -2 890 280 68 51 chr6 50613118 50613586 -138665968 + LTR26B-int LTR ERV1 601 1076 -5187 336 296 49 19 chr6 50613565 50613727 -138665827 + LTR26B-int LTR ERV1 1443 1609 -5067 * 388 357 63 46 chr6 50613983 50614716 -138664838 + LTR26B-int LTR ERV1 976 1720 -5402 309 321 0 9 chr6 50615112 50615221 -138664333 + LTR26B-int LTR ERV1 1994 2101 -5021 336 308 103 50 chr6 50615731 50616091 -138663463 + LTR26B-int LTR ERV1 2828 3206 -4607 857 335 90 34 chr6 50616321 50616807 -138662747 + LTR26B-int LTR ERV1 3502 3960 -3689 3550 108 67 3 chr6 50616807 50617371 -138662183 + LTR43 LTR ERV1 1 600 -2 857 335 90 34 chr6 50617371 50617650 -138661904 + LTR26B-int LTR ERV1 3960 4780 -2869 251 299 52 0 chr6 50617992 50618089 -138661465 + LTR26B-int LTR ERV1 4751 4852 -1677 372 296 67 17 chr6 50618218 50618397 -138661157 + LTR26B-int LTR ERV1 4953 5140 -1982 6914 197 33 19 chr6 50618898 50620192 -138659362 + L1PA14 LINE L1 2 1313 -6268 8045 106 14 5 chr6 50620235 50621357 -138658197 - L1P3 LINE L1 -5059 1402 270 7544 141 52 21 chr6 50621384 50623204 -138656350 + L1PA14 LINE L1 5300 7191 -408 1936 130 76 17 chr6 50623204 50623558 -138655996 + THE1C LTR MaLR 1 375 0 7544 141 52 21 chr6 50623558 50623968 -138655586 + L1PA14 LINE L1 7191 7587 -12 617 288 43 30 chr6 50625805 50626038 -138653516 + LTR26B-int LTR ERV1 5945 6180 -83 1647 200 53 96 chr6 50626121 50626671 -138652883 + LTR26B LTR ERV1 6 531 0 5912 38 0 1 chr6 50627269 50627282 -138652272 + L1P LINE L1 4186 4198 -1948 7871 21 8 0 chr6 50627282 50628532 -138651022 - L1PA3 LINE L1 0 6155 4902 5912 38 0 1 chr6 50628532 50629228 -138650326 + L1PA3 LINE L1 4198 4894 -1252 3576 133 14 238 chr6 50630404 50631649 -138647905 + MSTA-int LTR MaLR 613 1579 -1 1896 159 128 43 chr6 50631649 50632040 -138647514 + MSTA LTR MaLR 3 426 -2 983 145 13 7 chr6 50632070 50632222 -138647332 + FRAM SINE Alu 1 152 -24 1335 250 234 14 chr6 50632229 50633793 -138645761 + Charlie7 DNA MER1_type 409 2356 -256 5498 160 54 13 chr6 50635293 50635918 -138643636 - L1PB1 LINE L1 -5 6862 6264 1976 120 21 0 chr6 50635918 50636201 -138643353 - AluSx SINE Alu -17 295 7 5498 160 54 13 chr6 50636201 50637471 -138642083 - L1PB1 LINE L1 -603 6264 4887 5727 133 55 16 chr6 50637471 50638454 -138641100 - L1PB1 LINE L1 -5842 1021 1 419 269 44 60 chr6 50640812 50640994 -138638560 - HERV16 LTR ERVL -2579 2417 2239 232 264 7 143 chr6 50641935 50642075 -138637479 + MER5A DNA MER1_type 64 184 -5 374 267 168 24 chr6 50642723 50643015 -138636539 + L1M4 LINE L1 2605 2938 -3208 971 279 138 53 chr6 50643070 50644116 -138635438 + L1ME LINE L1 84 1218 -5205 287 204 134 45 chr6 50644365 50644522 -138635032 + L1ME LINE L1 1582 1752 -5189 285 172 17 0 chr6 50644623 50644681 -138634873 + L1MC2 LINE L1 6275 6333 -11 310 200 75 25 chr6 50644767 50644847 -138634707 + L1ME LINE L1 5371 5454 -1487 597 206 126 33 chr6 50645482 50645696 -138633858 + MER34B LTR ERV1 329 562 -3 275 284 79 63 chr6 50649553 50649807 -138629747 + MER51C-int LTR ERV1 2702 2959 -1688 1614 258 97 39 chr6 50650607 50651224 -138628330 + MER51C-int LTR ERV1 4219 4871 0 356 214 150 29 chr6 50651772 50651945 -138627609 - LTR33 LTR ERVL -2 519 326 2388 144 11 24 chr6 50651946 50652315 -138627239 - THE1B LTR MaLR 0 364 1 812 289 179 14 chr6 50652355 50652795 -138626759 + MER51C LTR ERV1 128 640 0 461 294 28 7 chr6 50652805 50652948 -138626606 - LTR33 LTR ERVL -364 157 12 466 274 96 14 chr6 50652972 50653191 -138626363 + L1ME LINE L1 6308 6544 -413 352 245 126 20 chr6 50653250 50653401 -138626153 + LTR33A LTR ERVL 43 209 -314 2075 148 62 10 chr6 50653714 50654098 -138625456 + LTR23 LTR ERV1 23 426 -11 28257 51 29 3 chr6 50654322 50658648 -138620906 - L1PA5 LINE L1 -13 6141 1707 269 341 38 8 chr6 50659190 50659322 -138620232 + LTR16C LTR ERVL 96 231 -260 259 275 37 37 chr6 50659805 50659914 -138619640 + ERVL LTR ERVL 546 654 -4342 397 310 150 34 chr6 50660227 50660553 -138619001 + ERVL LTR ERVL 987 1350 -3646 644 319 105 48 chr6 50660968 50661511 -138618043 + ERVL LTR ERVL 1967 2540 -3224 433 269 88 29 chr6 50661583 50661754 -138617800 + ERVL LTR ERVL 2624 2804 -2192 1936 120 3 40 chr6 50661968 50662269 -138617285 - AluSq SINE Alu -22 291 2 419 286 130 7 chr6 50662389 50662543 -138617011 + ERVL LTR ERVL 3165 3337 -2148 4258 83 13 0 chr6 50663274 50663804 -138615750 + L1PA7 LINE L1 5614 6150 -4 3051 164 73 82 chr6 50664851 50665548 -138614006 + LTR8 LTR ERV1 1 691 0 446 252 42 0 chr6 50665704 50665823 -138613731 - L1MB7 LINE L1 -16 6168 6045 3800 220 186 23 chr6 50665880 50665936 -138613618 - L1M4c LINE L1 -5221 1325 1279 1237 98 44 0 chr6 50665936 50666119 -138613435 - L1PB1 LINE L1 -1 6150 5960 3800 220 186 23 chr6 50666119 50667293 -138612261 - L1M4c LINE L1 -5267 1279 1 271 283 0 0 chr6 50667927 50667987 -138611567 + L1M4 LINE L1 287 346 -6196 237 127 55 154 chr6 50669098 50669208 -138610346 + L1MC4 LINE L1 6780 6878 -1164 3755 17 15 0 chr6 50669552 50669964 -138609590 - L1PA3 LINE L1 -8 6147 5730 775 221 91 5 chr6 50670575 50670783 -138608771 - MLT1H LTR MaLR -315 234 9 294 294 119 0 chr6 50672872 50672981 -138606573 - MER94 DNA DNA -6 128 7 273 300 131 50 chr6 50672983 50673130 -138606424 + LTR16B LTR ERVL 1 135 -329 270 0 0 0 chr6 50673130 50673160 -138606394 + (CAGGG)n Simple_repeat Simple_repeat 3 32 0 273 300 131 50 chr6 50673160 50673272 -138606282 + LTR16B LTR ERVL 135 281 -183 507 286 127 61 chr6 50673473 50673899 -138605655 + LTR33A LTR ERVL 70 523 0 1117 153 124 20 chr6 50675071 50675320 -138604234 - L1PB4 LINE L1 -6 6150 5876 393 301 290 20 chr6 50675608 50676160 -138603394 + L2 LINE L2 2261 2961 -353 770 278 109 26 chr6 50676446 50676831 -138602723 + LTR16B LTR ERVL 41 457 -7 351 318 45 28 chr6 50677135 50677314 -138602240 + ERVL LTR ERVL 367 548 -4448 375 300 100 37 chr6 50677950 50678140 -138601414 + ERVL LTR ERVL 2948 3149 -2505 295 177 76 51 chr6 50678140 50678219 -138601335 + L1MA10 LINE L1 6193 6273 -61 1117 317 96 53 chr6 50678310 50679789 -138599765 + ERVL LTR ERVL 3197 4456 -540 627 325 151 10 chr6 50683693 50684077 -138595477 + LTR16B LTR ERVL 27 464 0 381 284 203 35 chr6 50684127 50684437 -138595117 + L1M4 LINE L1 3604 3982 -2164 370 329 66 46 chr6 50687003 50687472 -138592082 + ERVL LTR ERVL 922 1507 -3621 499 314 76 19 chr6 50687654 50687864 -138591690 + ERVL LTR ERVL 1688 1909 -3087 2065 122 0 7 chr6 50688499 50688803 -138590751 - AluSq SINE Alu -6 307 6 385 305 65 1 chr6 50688817 50688978 -138590576 + ERVL LTR ERVL 2702 2855 -2141 345 313 102 11 chr6 50689337 50689513 -138590041 + ERVL LTR ERVL 3351 3542 -2222 329 271 109 28 chr6 50689713 50689975 -138589579 + ERVL LTR ERVL 3664 3955 -1699 648 326 61 30 chr6 50690030 50690373 -138589181 + ERVL LTR ERVL 4050 4413 -1241 330 164 0 0 chr6 50691416 50691471 -138588083 + MADE1 DNA Mariner 1 55 -25 490 251 81 87 chr6 50692521 50692891 -138586663 + LOR1a LTR ERV1 115 482 -15 324 162 59 0 chr6 50693611 50693679 -138585875 + LTR32 LTR ERVL 17 88 -383 570 200 103 39 chr6 50693690 50693845 -138585709 + LTR32 LTR ERVL 235 399 -72 9815 235 88 61 chr6 50693850 50697266 -138582288 + MERVL LTR ERVL 26 3552 -209 209 317 0 0 chr6 50698015 50698097 -138581457 + (CGG)n Simple_repeat Simple_repeat 2 83 0 279 356 51 23 chr6 50698860 50699024 -138580530 + PRIMA41-int LTR ERV1 7187 7360 -396 1889 108 10 17 chr6 50699024 50699319 -138580235 - AluSg SINE Alu -7 303 11 279 356 51 23 chr6 50699319 50699370 -138580184 + PRIMA41-int LTR ERV1 7360 7408 -348 418 209 100 9 chr6 50699386 50699496 -138580058 + HERVL32 LTR ERVL 3299 3418 0 355 130 116 0 chr6 50699496 50699565 -138579989 + LTR32 LTR ERVL 12 88 -383 803 141 125 38 chr6 50699571 50699755 -138579799 + LTR32 LTR ERVL 231 430 -41 1725 167 55 29 chr6 50699755 50700103 -138579451 + THE1B LTR MaLR 6 362 -2 247 227 0 0 chr6 50700105 50700149 -138579405 + LTR32 LTR ERVL 426 469 -2 857 130 15 0 chr6 50700242 50700373 -138579181 - AluSg/x SINE Alu -18 292 160 1166 108 0 0 chr6 50701223 50701390 -138578164 + AluY SINE Alu 136 302 -9 1385 194 145 25 chr6 50702303 50702704 -138576850 + LTR2 LTR ERV1 1 449 0 274 261 76 87 chr6 50708898 50709289 -138570265 + MLT2F LTR ERVL 5 663 0 442 335 21 47 chr6 50709564 50709797 -138569757 + MERVL LTR ERVL 2102 2328 -3436 308 290 80 0 chr6 50710637 50710737 -138568817 + MERVL LTR ERVL 3680 3787 -1698 2325 159 92 9 chr6 50711138 50711596 -138567958 - L1PA14 LINE L1 -12 6149 5654 1207 169 161 46 chr6 50711594 50712197 -138567357 + L1P4 LINE L1 4954 5602 -559 * 649 280 159 33 chr6 50712466 50712888 -138566666 - LTR33 LTR ERVL 0 521 47 265 198 93 58 chr6 50714907 50714993 -138564561 - L1MCa LINE L1 -4918 1646 1558 1080 224 154 23 chr6 50716174 50716827 -138562727 + MER21B LTR ERV1 1 810 -53 4283 206 125 38 chr6 50718443 50718490 -138561064 - L1 LINE L1 -1089 5057 5015 1674 138 46 7 chr6 50718490 50718772 -138560782 - AluSx SINE Alu -19 293 1 4283 206 125 38 chr6 50718772 50720300 -138559254 - L1 LINE L1 -1131 5015 3345 2398 159 144 41 chr6 50720322 50720932 -138558622 + L1PA16 LINE L1 5485 6157 -9 183 310 14 56 chr6 50721490 50721561 -138557993 + L2 LINE L2 3183 3250 -63 284 223 157 25 chr6 50723386 50723507 -138556047 - L1MCa LINE L1 -5843 202 66 180 204 0 68 chr6 50726188 50726232 -138553322 - MIR SINE MIR -6 256 216 311 291 17 34 chr6 50728704 50728821 -138550733 + MER5A DNA MER1_type 40 154 -35 334 276 51 10 chr6 50730862 50731023 -138548531 + MIR SINE MIR 1 168 -40 322 312 37 18 chr6 50731074 50731183 -138548371 - MIR SINE MIR -64 144 34 1041 249 117 14 chr6 50731597 50731947 -138547607 + LTR16B LTR ERVL 77 462 -2 442 176 0 22 chr6 50732090 50732181 -138547373 - LTR33 LTR ERVL -2 519 431 674 264 104 0 chr6 50732246 50732428 -138547126 - LTR33 LTR ERVL -320 201 1 266 287 178 54 chr6 50732648 50732979 -138546575 + L2 LINE L2 2942 3313 0 445 287 21 0 chr6 50734501 50734644 -138544910 + LTR16C LTR ERVL 346 491 0 342 202 228 67 chr6 50735565 50735758 -138543796 + MLT1J LTR MaLR 3 226 -285 329 206 56 128 chr6 50735819 50735999 -138543555 + MLT1J LTR MaLR 344 510 -1 338 257 59 75 chr6 50736574 50736761 -138542793 + L2 LINE L2 2946 3129 -143 644 242 62 6 chr6 50738401 50738579 -138540975 + MLT1J LTR MaLR 316 503 -8 690 251 40 86 chr6 50738761 50739205 -138540349 + MLT1H LTR MaLR 59 542 0 233 306 56 28 chr6 50739276 50739384 -138540170 + MIR SINE MIR 19 129 -79 1655 187 13 19 chr6 50739499 50739809 -138539745 + AluJo SINE Alu 1 308 -4 691 316 33 85 chr6 50740010 50740551 -138539003 - MER34 LTR ERV1 -29 513 1 378 200 114 29 chr6 50741074 50741179 -138538375 - L2 LINE L2 0 3313 3200 210 318 24 12 chr6 50741171 50741256 -138538298 - MIR SINE MIR -103 105 20 * 215 304 11 39 chr6 50741274 50741455 -138538099 + GA-rich Low_complexity Low_complexity 4 179 0 2904 128 16 5 chr6 50741584 50742007 -138537547 - MSTA LTR MaLR 0 428 1 560 317 66 6 chr6 50742678 50742861 -138536693 + MLT1I LTR MaLR 94 287 -122 339 263 40 0 chr6 50742933 50743032 -138536522 + MLT1I LTR MaLR 305 407 -2 448 189 79 31 chr6 50743271 50743398 -138536156 + MIR SINE MIR 89 221 -41 228 244 66 65 chr6 50743453 50743563 -138535991 - MIR3 SINE MIR -54 154 44 461 195 70 31 chr6 50744083 50744211 -138535343 + MIR SINE MIR 89 221 -41 259 315 22 22 chr6 50744266 50744355 -138535199 - MIR3 SINE MIR -54 154 66 665 226 54 27 chr6 50744829 50745015 -138534539 + LTR16A LTR ERVL 260 450 0 279 252 215 0 chr6 50745016 50745123 -138534431 - L2 LINE L2 -560 2754 2625 363 211 33 105 chr6 50745691 50745745 -138533809 + MIR SINE MIR 52 108 -137 2040 176 25 15 chr6 50745745 50746137 -138533417 - MSTD LTR MaLR 0 396 1 363 211 33 105 chr6 50746137 50746241 -138533313 + MIR SINE MIR 108 195 -50 3869 110 106 21 chr6 50746261 50746913 -138532641 + MER39 LTR ERV1 1 707 0 193 346 39 0 chr6 50747175 50747253 -138532301 - MIR SINE MIR -16 246 166 1294 221 43 32 chr6 50747321 50747696 -138531858 + LTR37A LTR ERV1 46 424 -2 4269 195 31 2 chr6 50748202 50749134 -138530420 - L1 LINE L1 -2826 3320 2362 1688 82 8 29 chr6 50749134 50749189 -138530365 + L1PB1 LINE L1 5912 5967 -184 2774 119 28 114 chr6 50749189 50749787 -138529767 - LTR10B LTR ERV1 0 547 1 1688 82 8 29 chr6 50749787 50749975 -138529579 + L1PB1 LINE L1 5967 6151 0 216 97 0 0 chr6 50749991 50750022 -138529532 + (A)n Simple_repeat Simple_repeat 1 31 0 207 206 0 79 chr6 50750528 50750591 -138528963 + L2 LINE L2 3165 3222 -91 192 229 0 21 chr6 50750657 50750705 -138528849 + L2 LINE L2 3267 3313 0 295 312 70 7 chr6 50750737 50750928 -138528626 - MIR SINE MIR -48 214 10 2982 150 51 13 chr6 50751232 50751287 -138528267 - MER34C LTR ERV1 -1 584 533 3001 153 66 82 chr6 50751287 50752026 -138527528 - LTR8A LTR ERV1 0 727 1 2982 150 51 13 chr6 50752026 50752498 -138527056 - MER34C LTR ERV1 -52 533 37 215 376 46 9 chr6 50752498 50752607 -138526947 - L2 LINE L2 -32 3240 3128 813 203 157 25 chr6 50753014 50753211 -138526343 - MER58A DNA MER1_type -1 223 1 298 306 20 14 chr6 50754745 50754877 -138524677 + MIR SINE MIR 18 147 -62 228 350 50 50 chr6 50755224 50755384 -138524170 + MIR SINE MIR 63 222 -40 1107 252 166 26 chr6 50755668 50756120 -138523434 + LTR33 LTR ERVL 1 515 -6 213 337 65 11 chr6 50757019 50757111 -138522443 + L2 LINE L2 3124 3220 -52 192 77 0 0 chr6 50758422 50758448 -138521106 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 2046 131 3 7 chr6 50758893 50759191 -138520363 + AluSc SINE Alu 1 297 -12 293 271 136 0 chr6 50759467 50759585 -138519969 - MIR3 SINE MIR -35 173 40 678 241 31 2 chr6 50759624 50759922 -138519632 - LTR16A LTR ERVL -5 445 91 337 313 219 5 chr6 50760510 50760702 -138518852 + MIR SINE MIR 13 245 -17 207 281 146 10 chr6 50762155 50762251 -138517303 + L2 LINE L2 3127 3235 -37 393 211 168 123 chr6 50762387 50762738 -138516816 + LTR16A1 LTR ERVL 79 445 -12 574 248 32 46 chr6 50762798 50763016 -138516538 - LTR16C LTR ERVL -32 459 245 395 250 55 73 chr6 50763091 50763255 -138516299 - LTR16C LTR ERVL -238 253 93 191 273 71 10 chr6 50763344 50763443 -138516111 + L2 LINE L2 2302 2406 -908 1554 234 20 74 chr6 50764238 50764625 -138514929 - L1MA9 LINE L1 -38 6274 5923 1983 148 0 10 chr6 50764625 50764951 -138514603 - AluSx SINE Alu 0 312 3 1554 234 20 74 chr6 50764951 50765105 -138514449 - L1MA9 LINE L1 -389 5923 5762 442 252 42 0 chr6 50765307 50765426 -138514128 - L1MB7 LINE L1 -16 6168 6045 3769 216 180 24 chr6 50765483 50765539 -138514015 - L1M4 LINE L1 -5128 1414 1368 1172 98 44 0 chr6 50765539 50765722 -138513832 - L1PB1 LINE L1 -1 6150 5960 3769 216 180 24 chr6 50765722 50766896 -138512658 - L1M4 LINE L1 -5174 1368 1 273 283 0 0 chr6 50767530 50767590 -138511964 + L1M4 LINE L1 287 346 -6196 255 138 55 147 chr6 50768700 50768809 -138510745 + L1MC4 LINE L1 6780 6878 -1164 1051 65 14 0 chr6 50769153 50769292 -138510262 - L1PA3 LINE L1 -8 6147 6007 317 318 219 5 chr6 50769886 50770078 -138509476 + MIR SINE MIR 13 245 -17 407 211 168 123 chr6 50771761 50772112 -138507442 + LTR16A1 LTR ERVL 79 445 -12 537 249 37 46 chr6 50772172 50772389 -138507165 - LTR16C LTR ERVL -32 459 245 395 250 55 73 chr6 50772464 50772628 -138506926 - LTR16C LTR ERVL -238 253 93 191 273 71 10 chr6 50772716 50772815 -138506739 + L2 LINE L2 2302 2406 -908 13152 226 41 33 chr6 50773610 50773997 -138505557 - L1MA9 LINE L1 -38 7295 6913 1983 148 0 10 chr6 50773997 50774323 -138505231 - AluSx SINE Alu 0 312 3 13152 226 41 33 chr6 50774323 50775910 -138503644 - L1MA9 LINE L1 -420 6913 5341 2077 151 112 3 chr6 50775910 50776294 -138503260 + MSTB LTR MaLR 1 426 0 13152 226 41 33 chr6 50776294 50781851 -138497703 - L1MA9 LINE L1 -1992 5341 3 316 296 57 82 chr6 50782041 50782359 -138497195 + L2 LINE L2 2553 2862 -452 223 297 22 11 chr6 50782439 50782530 -138497024 + L2 LINE L2 2986 3077 -195 721 206 24 6 chr6 50782981 50783146 -138496408 + MER5A DNA MER1_type 1 168 -21 336 176 0 15 chr6 50783156 50783224 -138496330 + MER5B DNA MER1_type 1 67 -111 422 260 47 42 chr6 50783479 50783671 -138495883 - L1MC5 LINE L1 -50 7911 7719 315 237 0 43 chr6 50783672 50783765 -138495789 + L1MC4 LINE L1 6615 6703 -1339 405 223 0 0 chr6 50783767 50783861 -138495693 + (TA)n Simple_repeat Simple_repeat 2 95 0 253 303 0 0 chr6 50783864 50783953 -138495601 + L1MC4 LINE L1 6615 6703 -1339 318 247 0 0 chr6 50784604 50784697 -138494857 + (TA)n Simple_repeat Simple_repeat 1 93 0 291 206 125 65 chr6 50784698 50784882 -138494672 - L1MC5 LINE L1 -314 7647 7453 29 60 0 0 chr6 50785083 50785133 -138494421 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr6 50785228 50785253 -138494301 + AT_rich Low_complexity Low_complexity 1 25 0 376 212 236 30 chr6 50785523 50785688 -138493866 + LTR16A LTR ERVL 1 199 -251 558 181 34 27 chr6 50785734 50785883 -138493671 + LTR16A LTR ERVL 301 450 0 1659 172 62 34 chr6 50786136 50786491 -138493063 - MLT1A1 LTR MaLR 0 365 1 2182 188 23 0 chr6 50786835 50787186 -138492368 - MLT1A1 LTR MaLR -2 363 5 2259 96 0 0 chr6 50787947 50788240 -138491314 - AluSg SINE Alu -17 293 1 26 0 0 0 chr6 50788322 50788348 -138491206 + AT_rich Low_complexity Low_complexity 1 26 0 418 333 84 36 chr6 50788619 50789180 -138490374 + L1M4 LINE L1 3338 3925 -2221 381 322 115 21 chr6 50789311 50789824 -138489730 + L1M4 LINE L1 4028 4588 -1558 3927 138 34 5 chr6 50790333 50790990 -138488564 + L1MA4A LINE L1 5605 6280 -23 1119 243 114 57 chr6 50792915 50793091 -138486463 + MLT2F LTR ERVL 4 168 -495 2079 109 7 0 chr6 50793091 50793391 -138486163 - AluSc SINE Alu 0 302 1 1119 243 114 57 chr6 50793391 50793720 -138485834 + MLT2F LTR ERVL 168 539 -124 3730 295 88 35 chr6 50793835 50795709 -138483845 + HERVL-F LTR ERVL 16 1988 -3666 806 198 62 12 chr6 50795742 50795904 -138483650 + HERVL-F LTR ERVL 2107 2276 -3488 * 3432 216 122 32 chr6 50795886 50796892 -138482662 + ERVL-F LTR ERVL 4634 5730 -34 697 236 6 42 chr6 50796953 50797118 -138482436 - FRAM SINE Alu -12 164 6 576 173 98 15 chr6 50797351 50797484 -138482070 + MLT2F LTR ERVL 1 144 -519 233 125 0 0 chr6 50797509 50797541 -138482013 + MLT2F LTR ERVL 632 663 0 1113 219 53 4 chr6 50798462 50798709 -138480845 - ERVL LTR ERVL -597 5167 4909 1991 261 55 2 chr6 50799035 50799579 -138479975 - HAL1 LINE L1 -636 1871 1299 22 35 0 0 chr6 50800044 50800073 -138479481 + AT_rich Low_complexity Low_complexity 1 29 0 732 239 101 0 chr6 50800660 50800819 -138478735 + MER5B DNA MER1_type 4 178 0 183 309 18 0 chr6 50800819 50800871 -138478683 + MIR3 SINE MIR 153 205 -3 2262 166 61 10 chr6 50801343 50801754 -138477800 - MSTB1 LTR MaLR 0 432 1 5021 210 24 7 chr6 50801754 50802738 -138476816 - MSTB1-int LTR MaLR 0 1651 651 7342 186 50 38 chr6 50802738 50804327 -138475227 + MER52A LTR ERV1 1 1755 0 3031 210 20 15 chr6 50804327 50804652 -138474902 - MSTB1-int LTR MaLR -997 654 332 4850 159 37 13 chr6 50804652 50805417 -138474137 - LTR39 LTR ERV1 0 783 1 3031 210 20 15 chr6 50805417 50805742 -138473812 - MSTB1-int LTR MaLR -1319 332 1 2466 156 30 39 chr6 50805742 50806178 -138473376 - MSTB1 LTR MaLR 0 432 1 258 218 23 58 chr6 50806376 50806463 -138473091 + LTR67 LTR ERVL 459 542 -15 320 264 96 2 chr6 50806567 50806690 -138472864 - MIR SINE MIR -62 146 19 288 386 8 0 chr6 50807069 50807196 -138472358 - MIR3 SINE MIR -11 197 70 537 307 107 25 chr6 50807945 50808189 -138471365 + LTR16C LTR ERVL 97 360 -131 1533 189 30 65 chr6 50808265 50808387 -138471167 - L1MB4 LINE L1 -17 6163 6038 2192 121 0 13 chr6 50808387 50808694 -138470860 - AluSx SINE Alu -7 305 3 1533 189 30 65 chr6 50808694 50808968 -138470586 - L1MB4 LINE L1 -142 6038 5781 407 185 15 0 chr6 50808968 50809033 -138470521 - MER2 DNA MER2_type 0 345 280 20928 165 18 5 chr6 50809052 50813807 -138465747 + L1PA14 LINE L1 1 4824 -2760 10238 165 19 3 chr6 50813908 50816496 -138463058 + L1PA14 LINE L1 4983 7599 0 1229 177 5 0 chr6 50816527 50816736 -138462818 - MER2 DNA MER2_type -135 210 1 1789 167 73 14 chr6 50816736 50817166 -138462388 - L1MB4 LINE L1 -391 5783 5345 1326 230 68 47 chr6 50817266 50817779 -138461775 - L1MB4 LINE L1 -768 5378 4855 2033 166 53 4 chr6 50818053 50818459 -138461095 + MLT2B2 LTR ERVL 1 480 -35 519 66 0 0 chr6 50818459 50818535 -138461019 + (TCTA)n Simple_repeat Simple_repeat 4 79 0 2033 166 53 4 chr6 50818535 50818572 -138460982 + MLT2B2 LTR ERVL 480 514 -1 287 273 0 13 chr6 50818573 50818650 -138460904 + LTR33 LTR ERVL 446 521 0 368 309 9 0 chr6 50818804 50818927 -138460627 + MIR SINE MIR 20 143 -65 228 272 12 25 chr6 50819561 50819642 -138459912 - LTR33A LTR ERVL 0 523 444 2423 15 0 0 chr6 50820132 50820397 -138459157 - L1PA2 LINE L1 -440 5715 5451 3034 111 0 138 chr6 50820397 50820916 -138458638 + L1PA2 LINE L1 5703 6153 -2 620 303 63 0 chr6 50821338 50821513 -138458041 + MIR SINE MIR 47 232 -30 2262 104 3 0 chr6 50821780 50822069 -138457485 + AluSx SINE Alu 1 290 -22 487 189 3 192 chr6 50822110 50822423 -138457131 - MER112 DNA MER1_type -3 257 4 304 241 204 29 chr6 50823232 50823369 -138456185 - MIR SINE MIR -78 184 24 439 265 194 52 chr6 50823380 50823787 -138455767 + L2 LINE L2 2829 3293 -20 244 224 71 12 chr6 50825101 50825186 -138454368 + MIR SINE MIR 127 216 -46 1285 150 45 0 chr6 50825377 50825597 -138453957 - L1MB1 LINE L1 -318 5850 5621 * 1616 148 0 26 chr6 50825587 50825857 -138453697 + L1MB1 LINE L1 5906 6168 0 2210 82 14 0 chr6 50828028 50828321 -138451233 - AluSg SINE Alu -13 297 1 307 340 90 14 chr6 50828825 50828969 -138450585 + MIR SINE MIR 60 214 -48 1170 272 102 49 chr6 50830205 50831002 -138448552 - L2 LINE L2 0 3313 2464 309 333 137 31 chr6 50831017 50831272 -138448282 - L3 LINE CR1 -38 1539 1258 269 353 188 0 chr6 50831526 50831696 -138447858 + L2 LINE L2 1388 1589 -1725 383 296 56 62 chr6 50831697 50832164 -138447390 + HAL1b LINE L1 151 614 -734 641 360 39 27 chr6 50832845 50833362 -138446192 + L1M4 LINE L1 2320 2842 -3304 4969 252 79 16 chr6 50833366 50835033 -138444521 + L1MEc LINE L1 44 1815 -4581 1668 162 15 23 chr6 50835034 50835402 -138444152 - MER47B DNA MER2_type -1 417 1 983 230 54 33 chr6 50835410 50835741 -138443813 + L1MEc LINE L1 1826 2163 -4233 227 297 0 33 chr6 50838473 50838564 -138440990 + GA-rich Low_complexity Low_complexity 4 91 0 213 250 0 0 chr6 50839058 50839106 -138440448 + (TTA)n Simple_repeat Simple_repeat 1 48 0 552 307 140 37 chr6 50839245 50839682 -138439872 - LTR67 LTR ERVL 0 557 76 305 299 36 51 chr6 50840817 50840954 -138438600 + MIR3 SINE MIR 3 137 -71 426 319 72 6 chr6 50841044 50841210 -138438344 + MIR SINE MIR 79 255 -7 324 217 19 25 chr6 50841454 50841564 -138437990 + MIR SINE MIR 49 154 -62 2893 216 75 34 chr6 50841565 50842364 -138437190 + MER21B LTR ERV1 1 832 -31 551 279 109 6 chr6 50843453 50843636 -138435918 + MIR SINE MIR 2 203 -59 423 0 0 0 chr6 50845441 50845488 -138434066 + (CA)n Simple_repeat Simple_repeat 2 48 0 893 146 63 58 chr6 50846703 50846908 -138432646 + MER3 DNA MER1_type 3 208 -1 287 274 138 42 chr6 50847499 50847703 -138431851 + MIR3 SINE MIR 13 245 -17 252 248 372 0 chr6 50847963 50848076 -138431478 + MIR3 SINE MIR 49 203 -5 443 289 95 33 chr6 50848880 50849185 -138430369 + MER102a DNA MER1_type 7 330 0 259 342 50 17 chr6 50849473 50849593 -138429961 + L3 LINE CR1 1367 1490 -87 247 305 8 78 chr6 50849654 50849782 -138429772 + MIR3 SINE MIR 14 132 -76 316 250 15 0 chr6 50850210 50850278 -138429276 + MIR3 SINE MIR 89 157 -51 634 205 84 12 chr6 50851048 50851214 -138428340 + MER96B DNA MER1_type? 1 178 -239 741 251 37 19 chr6 50851719 50851934 -138427620 + MER20 DNA MER1_type 1 219 0 195 374 34 20 chr6 50852057 50852204 -138427350 - L3b LINE CR1 -100 1483 1335 279 208 19 0 chr6 50852592 50852642 -138426912 - L2 LINE L2 0 3272 3222 181 273 23 0 chr6 50852642 50852686 -138426868 - MER5A DNA MER1_type -2 187 143 238 222 32 16 chr6 50852696 50852759 -138426795 + MER21B LTR ERV1 209 272 -591 833 79 9 0 chr6 50852924 50853038 -138426516 - L1PB2 LINE L1 -2 6149 6035 523 266 47 73 chr6 50853038 50853302 -138426252 + MER21A LTR ERV1 471 782 -23 241 250 0 18 chr6 50855029 50855085 -138424469 - L2 LINE L2 -14 3258 3204 337 287 133 14 chr6 50855139 50855282 -138424272 + MIR SINE MIR 97 256 -6 689 246 35 15 chr6 50855427 50855630 -138423924 - L1ME3A LINE L1 -41 6129 5923 485 253 219 11 chr6 50855807 50855985 -138423569 + MIR SINE MIR 44 258 -4 367 310 0 4 chr6 50855987 50856087 -138423467 + MIR SINE MIR 6 102 -111 2481 145 20 5 chr6 50856089 50856495 -138423059 + MSTB LTR MaLR 4 415 -11 498 236 49 8 chr6 50856497 50856620 -138422934 + MIR SINE MIR 134 261 -1 246 62 0 0 chr6 50856630 50856662 -138422892 + (CAT)n Simple_repeat Simple_repeat 2 33 0 261 0 0 0 chr6 50857118 50857147 -138422407 + (CA)n Simple_repeat Simple_repeat 1 29 0 894 264 45 63 chr6 50858388 50858835 -138420719 + LTR16A1 LTR ERVL 7 445 -12 391 233 4 4 chr6 50859894 50860123 -138419431 + (CA)n Simple_repeat Simple_repeat 1 229 0 195 215 0 0 chr6 50860169 50860234 -138419320 + (CA)n Simple_repeat Simple_repeat 2 66 0 629 279 75 44 chr6 50860746 50860972 -138418582 - MIR SINE MIR -4 258 26 232 250 0 0 chr6 50861127 50861175 -138418379 + (TG)n Simple_repeat Simple_repeat 1 48 0 247 219 48 10 chr6 50861519 50861591 -138417963 - MIR SINE MIR -81 181 107 1539 215 3 16 chr6 50862051 50862367 -138417187 + AluJo SINE Alu 1 312 0 538 300 41 12 chr6 50862497 50862667 -138416887 - MIR SINE MIR -65 197 23 250 286 0 0 chr6 50862699 50862755 -138416799 + MER112 DNA MER1_type 1 56 -204 310 299 71 19 chr6 50862795 50862949 -138416605 + LTR33 LTR ERVL 56 217 -304 1807 132 34 34 chr6 50863003 50863330 -138416224 + THE1B LTR MaLR 1 327 -37 425 238 94 17 chr6 50863486 50863667 -138415887 + LTR33 LTR ERVL 327 521 0 237 336 81 20 chr6 50863818 50863967 -138415587 - MIR3 SINE MIR -28 180 23 395 244 0 0 chr6 50864150 50864232 -138415322 - MIR3 SINE MIR -3 205 124 237 250 102 0 chr6 50864647 50864735 -138414819 + Charlie7 DNA MER1_type 5 101 -2511 522 204 178 13 chr6 50864870 50865027 -138414527 + MER5A DNA MER1_type 1 183 -6 467 269 134 15 chr6 50865148 50865282 -138414272 + MER91A DNA MER1_type 36 185 -11 214 265 20 49 chr6 50865496 50865598 -138413956 + GA-rich Low_complexity Low_complexity 2 100 0 552 75 12 12 chr6 50865737 50865817 -138413737 + MADE1 DNA Mariner 1 80 0 1472 168 67 50 chr6 50865852 50866150 -138413404 + AluJo SINE Alu 1 303 -9 307 235 44 0 chr6 50867144 50867212 -138412342 - MIR3 SINE MIR -23 185 115 192 235 78 20 chr6 50867360 50867411 -138412143 + L2 LINE L2 3219 3272 0 201 269 0 39 chr6 50867414 50867466 -138412088 - MIR SINE MIR -100 108 59 656 277 31 55 chr6 50867528 50867601 -138411953 + MIR SINE MIR 8 81 -181 818 281 83 72 chr6 50867601 50868060 -138411494 + LTR16B LTR ERVL 1 464 0 656 277 31 55 chr6 50868060 50868242 -138411312 + MIR SINE MIR 81 257 -5 281 216 0 40 chr6 50868868 50868932 -138410622 + MIR3 SINE MIR 134 196 -12 882 232 57 5 chr6 50868932 50869143 -138410411 - MER58A DNA MER1_type 0 224 3 388 251 90 71 chr6 50869562 50869773 -138409781 + MLT1K LTR MaLR 374 588 0 1062 240 47 65 chr6 50869921 50870400 -138409154 + MER34B LTR ERV1 10 459 -106 2390 148 49 7 chr6 50870400 50870805 -138408749 + MSTB LTR MaLR 1 422 -4 1062 240 47 65 chr6 50870805 50870911 -138408643 + MER34B LTR ERV1 459 565 0 189 0 0 0 chr6 50871010 50871031 -138408523 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 211 330 59 25 chr6 50871775 50871893 -138407661 + MIR SINE MIR 26 147 -61 420 272 78 35 chr6 50872093 50872279 -138407275 + MIR SINE MIR 43 238 -24 389 205 39 0 chr6 50872333 50872411 -138407143 - MIR SINE MIR -88 174 94 477 242 102 75 chr6 50873016 50873254 -138406300 + L2 LINE L2 2790 3022 -291 2238 124 3 3 chr6 50873254 50873553 -138406001 + AluSx SINE Alu 1 299 -13 477 242 102 75 chr6 50873553 50873611 -138405943 + L2 LINE L2 3022 3077 -236 1158 167 74 98 chr6 50873620 50873998 -138405556 + LTR34 LTR ERV1 2 370 -329 819 169 0 79 chr6 50874001 50874178 -138405376 + LTR34 LTR ERV1 533 695 -4 543 286 120 18 chr6 50874179 50874396 -138405158 + L2 LINE L2 3074 3312 -1 1709 194 97 3 chr6 50874457 50874817 -138404737 - MSTD LTR MaLR -2 394 1 1586 159 48 3 chr6 50874817 50875112 -138404442 - MSTD-int LTR MaLR 0 1735 1428 4178 241 13 38 chr6 50875147 50875680 -138403874 - MSTD-int LTR MaLR -636 1099 554 2211 119 7 0 chr6 50875680 50875982 -138403572 - AluSg SINE Alu -6 304 1 4178 241 13 38 chr6 50875982 50876572 -138402982 - MSTD-int LTR MaLR -1181 554 4 948 233 67 0 chr6 50876574 50876797 -138402757 - MSTD LTR MaLR -2 394 157 280 286 0 16 chr6 50877494 50877557 -138401997 - MER91 DNA MER1_type -78 62 1 186 297 31 16 chr6 50877571 50877635 -138401919 - MIR3 SINE MIR -21 187 123 2295 106 10 0 chr6 50877635 50877927 -138401627 + AluSq SINE Alu 2 296 -17 243 0 0 0 chr6 50878097 50878124 -138401430 + (A)n Simple_repeat Simple_repeat 1 27 0 331 303 23 45 chr6 50878124 50878256 -138401298 - MIR3 SINE MIR -73 135 7 1920 123 38 3 chr6 50878261 50878553 -138401001 - AluY SINE Alu -9 302 1 270 274 59 118 chr6 50878825 50879062 -138400492 + MIR SINE MIR 7 229 -33 222 216 81 14 chr6 50879797 50879871 -138399683 - MIR SINE MIR -7 255 177 1259 253 142 18 chr6 50879872 50880093 -138399461 + MLT1H1 LTR MaLR 1 193 -362 2091 128 0 0 chr6 50880093 50880397 -138399157 + AluSg SINE Alu 1 304 0 1259 253 142 18 chr6 50880397 50880625 -138398929 + MLT1H1 LTR MaLR 193 507 -48 731 250 18 6 chr6 50880642 50880806 -138398748 - MIR SINE MIR -84 178 13 181 284 80 23 chr6 50880742 50880830 -138398724 + MIR SINE MIR 12 104 -158 * 201 175 0 0 chr6 50881019 50881059 -138398495 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 279 93 0 0 chr6 50881337 50881380 -138398174 + (A)n Simple_repeat Simple_repeat 1 43 0 240 281 92 9 chr6 50882646 50882785 -138396769 + L2 LINE L2 2874 3018 -254 3919 176 32 43 chr6 50882838 50883461 -138396093 + LTR39 LTR ERV1 1 615 -168 2354 101 0 3 chr6 50883461 50883768 -138395786 + AluSc SINE Alu 1 306 -3 3919 176 32 43 chr6 50883768 50883936 -138395618 + LTR39 LTR ERV1 615 783 0 243 286 14 0 chr6 50884099 50884169 -138395385 + L2 LINE L2 3202 3272 0 245 306 41 48 chr6 50884893 50885187 -138394367 - MER5A DNA MER1_type -4 185 40 249 311 38 42 chr6 50884918 50884959 -138394595 + MER5A DNA MER1_type 29 69 -109 584 162 270 7 chr6 50884959 50885107 -138394447 - MER5A DNA MER1_type 0 189 3 249 311 38 42 chr6 50885107 50885206 -138394348 + MER5A DNA MER1_type 69 165 -13 285 359 60 12 chr6 50885213 50885380 -138394174 + MER5A DNA MER1_type 12 186 -3 284 328 63 45 chr6 50885391 50885503 -138394051 - MIR SINE MIR -58 150 36 1969 242 51 18 chr6 50886281 50886830 -138392724 - MLT1F1 LTR MaLR 0 567 1 309 337 20 0 chr6 50886872 50886970 -138392584 + L2 LINE L2 3205 3304 -9 432 318 45 40 chr6 50887549 50887750 -138391804 + MIR SINE MIR 1 202 -60 524 335 108 4 chr6 50888327 50888605 -138390949 + LTR16A1 LTR ERVL 147 453 -4 384 286 94 43 chr6 50889438 50889672 -138389882 + LTR33 LTR ERVL 41 286 -235 372 238 54 36 chr6 50889698 50889866 -138389688 + LTR33 LTR ERVL 343 513 -8 1160 191 104 86 chr6 50890106 50890373 -138389181 + MLT1B LTR MaLR 1 279 -111 3273 70 56 0 chr6 50890373 50890802 -138388752 + MLT2A2 LTR ERVL 1 453 0 1160 191 104 86 chr6 50890802 50890917 -138388637 + MLT1B LTR MaLR 279 390 0 503 339 0 0 chr6 50892155 50892335 -138387219 + (CA)n Simple_repeat Simple_repeat 1 180 0 322 304 146 18 chr6 50892496 50892667 -138386887 + MIR SINE MIR 60 252 -10 340 175 0 0 chr6 50892738 50892795 -138386759 + AluJo SINE Alu 1 57 -245 372 200 0 12 chr6 50892806 50892886 -138386668 + MLT1B LTR MaLR 307 385 -5 1471 135 4 30 chr6 50892886 50893123 -138386431 + AluJo SINE Alu 60 290 -22 430 288 24 16 chr6 50893126 50893251 -138386303 - MIR SINE MIR -62 146 21 752 264 78 0 chr6 50893841 50894034 -138385520 - MIR SINE MIR -10 252 45 1119 265 56 12 chr6 50894071 50894411 -138385143 - LTR16C LTR ERVL -32 459 105 264 271 125 10 chr6 50895518 50895614 -138383940 + MIR SINE MIR 121 227 -35 317 285 114 0 chr6 50895655 50895778 -138383776 + L2 LINE L2 3136 3272 0 405 316 73 11 chr6 50895858 50896035 -138383519 + L2 LINE L2 3117 3304 -9 227 306 0 0 chr6 50897275 50897324 -138382230 - L2 LINE L2 -87 3185 3137 340 281 91 16 chr6 50897659 50897780 -138381774 - MIR SINE MIR -114 148 19 429 296 40 40 chr6 50897839 50898065 -138381489 - LTR16C LTR ERVL -2 489 264 2675 102 8 6 chr6 50898331 50898694 -138380860 + THE1B LTR MaLR 1 364 0 10813 108 38 13 chr6 50898694 50900235 -138379319 + THE1B-int LTR MaLR 1 1580 0 2618 94 34 6 chr6 50900237 50900589 -138378965 + THE1B LTR MaLR 3 364 0 1665 228 22 49 chr6 50900904 50901395 -138378159 + MLT1J LTR MaLR 1 478 -33 469 297 55 7 chr6 50901396 50901541 -138378013 + L2 LINE L2 3121 3272 0 2535 75 0 28 chr6 50901585 50901904 -138377650 + AluY SINE Alu 1 310 -1 389 279 218 38 chr6 50902128 50902444 -138377110 + L2 LINE L2 2890 3262 -10 272 290 10 30 chr6 50902988 50903088 -138376466 - MIR3 SINE MIR -29 179 82 344 269 72 48 chr6 50903098 50903265 -138376289 - LTR16C LTR ERVL 0 491 321 250 221 26 26 chr6 50903796 50903873 -138375681 - MLT1J LTR MaLR -196 315 239 950 251 147 14 chr6 50904676 50905030 -138374524 - LTR16C LTR ERVL -2 489 89 418 218 83 23 chr6 50905164 50905320 -138374234 - MER20B DNA MER1_type -17 202 34 209 216 0 59 chr6 50906236 50906287 -138373267 - MIR SINE MIR -5 257 210 841 189 42 26 chr6 50906288 50906479 -138373075 - MER3 DNA MER1_type -2 207 14 651 316 37 41 chr6 50906577 50906654 -138372900 - MIR SINE MIR -30 232 156 1792 166 72 6 chr6 50906654 50906974 -138372580 - MER58B DNA MER1_type 0 341 1 651 316 37 41 chr6 50906974 50907114 -138372440 - MIR SINE MIR -106 156 16 1489 312 123 20 chr6 50907126 50908137 -138371417 - L2 LINE L2 -149 3164 2046 565 298 133 15 chr6 50908312 50908644 -138370910 - LTR33 LTR ERVL 0 521 151 264 288 96 0 chr6 50908645 50908770 -138370784 + L1MC4a LINE L1 5619 5755 -2053 402 229 101 0 chr6 50908843 50908952 -138370602 - MIR SINE MIR -19 243 124 262 281 142 20 chr6 50908957 50909210 -138370344 + L1MC4a LINE L1 5748 6031 -1777 322 329 42 25 chr6 50909359 50909532 -138370022 + MIR SINE MIR 32 205 -57 219 36 0 0 chr6 50910214 50910242 -138369312 + (TG)n Simple_repeat Simple_repeat 2 29 0 262 294 137 14 chr6 50910453 50910599 -138368955 - MIR SINE MIR -13 249 86 382 79 32 0 chr6 50911610 50911673 -138367881 + (ATG)n Simple_repeat Simple_repeat 1 65 0 850 230 185 4 chr6 50911687 50911952 -138367602 + L2 LINE L2 2996 3308 -5 182 267 67 0 chr6 50911938 50911983 -138367571 + MIR3 SINE MIR 132 179 -29 * 2489 151 57 2 chr6 50912098 50912502 -138367052 - MSTB LTR MaLR 0 426 1 350 279 90 8 chr6 50912681 50912803 -138366751 - MIR SINE MIR -34 228 97 411 236 62 50 chr6 50912900 50913061 -138366493 + MER103 DNA DNA 3 165 -1 418 271 56 0 chr6 50913544 50913651 -138365903 - MIR SINE MIR -58 204 92 1052 251 13 4 chr6 50914400 50914639 -138364915 - MIR SINE MIR -21 241 1 1559 231 148 7 chr6 50914853 50915278 -138364276 + MLT1G1 LTR MaLR 111 595 0 374 276 60 83 chr6 50915566 50915783 -138363771 - L1MEd LINE L1 -5095 1024 813 2415 176 19 39 chr6 50915791 50916308 -138363246 + MLT2B2 LTR ERVL 1 507 -8 562 317 11 6 chr6 50916362 50916542 -138363012 - L1MEd LINE L1 -5375 744 564 1059 178 20 25 chr6 50916672 50916869 -138362685 + AluJo SINE Alu 106 301 -11 909 246 148 43 chr6 50917412 50917887 -138361667 - MLT1H LTR MaLR 0 542 23 277 330 0 0 chr6 50918615 50918709 -138360845 - MLT1K LTR MaLR 0 588 495 416 251 91 30 chr6 50919351 50919421 -138360133 - MIR3 SINE MIR -32 230 166 1760 187 0 3 chr6 50919421 50919720 -138359834 - AluJb SINE Alu -14 298 1 416 251 91 30 chr6 50919720 50919857 -138359697 - MIR3 SINE MIR -96 166 12 884 227 10 0 chr6 50919900 50920103 -138359451 + L1ME3 LINE L1 5624 5828 -334 1706 165 0 4 chr6 50920103 50920363 -138359191 + AluSx SINE Alu 36 294 -18 1268 120 0 0 chr6 50920363 50920530 -138359024 + AluSp SINE Alu 142 308 -5 1272 247 34 0 chr6 50920531 50920859 -138358695 + L1ME3 LINE L1 5824 6162 0 363 326 0 0 chr6 50921528 50921617 -138357937 - MER91B DNA MER1_type -11 179 91 523 266 8 0 chr6 50921636 50921764 -138357790 - MER91B DNA MER1_type -61 129 1 1440 233 30 30 chr6 50921869 50922238 -138357316 + MLT1A2 LTR MaLR 6 374 0 191 320 62 98 chr6 50922941 50923328 -138356226 - L2 LINE L2 -28 3244 2872 823 146 47 73 chr6 50925352 50925544 -138354010 - MER5A DNA MER1_type -2 187 1 190 247 123 12 chr6 50925665 50925746 -138353808 + L2 LINE L2 3163 3252 -61 722 341 0 5 chr6 50926053 50926270 -138353284 - MIR SINE MIR -34 228 13 341 230 18 96 chr6 50926793 50926950 -138352604 + MER5A DNA MER1_type 36 189 0 507 251 107 26 chr6 50927768 50928039 -138351515 - LTR33A LTR ERVL -5 518 226 496 263 65 60 chr6 50928654 50929016 -138350538 + MLT1I LTR MaLR 1 367 -42 300 246 14 0 chr6 50929198 50929267 -138350287 + L2 LINE L2 3202 3271 -1 196 311 56 22 chr6 50929651 50929741 -138349813 + L3 LINE CR1 1075 1167 -410 312 297 11 33 chr6 50930372 50930463 -138349091 - MIR3 SINE MIR -10 198 110 292 306 65 71 chr6 50931751 50932074 -138347480 - L2 LINE L2 -36 3236 2916 309 282 97 20 chr6 50932317 50932467 -138347087 - MIR SINE MIR -63 145 13 284 287 75 53 chr6 50932554 50932819 -138346735 - L1ME4a LINE L1 -5 6116 5846 231 277 69 40 chr6 50932832 50932933 -138346621 - MIR SINE MIR -93 169 66 574 252 148 0 chr6 50933327 50933482 -138346072 + MER5A DNA MER1_type 4 181 -8 794 266 60 8 chr6 50933573 50933821 -138345733 - MIR SINE MIR 0 262 2 290 299 113 15 chr6 50934033 50934227 -138345327 - MIR SINE MIR -24 238 21 1357 277 38 34 chr6 50935003 50935501 -138344053 + MLT1J LTR MaLR 9 508 -3 308 337 5 7 chr6 50935682 50935808 -138343746 - MIR SINE MIR -48 160 36 614 278 111 6 chr6 50936140 50936302 -138343252 + MIR SINE MIR 13 191 -71 292 315 97 11 chr6 50936394 50936527 -138343027 + L2 LINE L2 3167 3308 -5 1845 239 48 15 chr6 50936714 50937125 -138342429 + L1M4 LINE L1 4321 4758 -1388 2287 110 27 32 chr6 50937125 50937498 -138342056 - THE1C LTR MaLR 0 375 5 1845 239 48 15 chr6 50937498 50937672 -138341882 + L1M4 LINE L1 4758 4925 -1221 329 193 34 0 chr6 50937679 50937757 -138341797 + L1M4 LINE L1 4767 4850 -1296 235 235 0 0 chr6 50937756 50937807 -138341747 - L1M4 LINE L1 -1181 4965 4915 * 299 197 56 0 chr6 50937809 50937880 -138341674 + L1M4 LINE L1 4936 5010 -1136 1688 156 0 7 chr6 50937880 50938149 -138341405 + AluSx SINE Alu 1 267 -45 250 222 14 14 chr6 50938160 50938232 -138341322 + (TA)n Simple_repeat Simple_repeat 1 72 0 636 220 64 23 chr6 50938262 50938435 -138341119 + L1M4 LINE L1 5005 5184 -962 3348 191 88 23 chr6 50938525 50938776 -138340778 - L1MA9 LINE L1 -143 6169 5936 2164 146 19 21 chr6 50938776 50939152 -138340402 - THE1C LTR MaLR 0 375 1 3348 191 88 23 chr6 50939152 50940250 -138339304 - L1MA9 LINE L1 -376 5936 4727 3657 186 16 31 chr6 50940253 50940445 -138339109 - L1 LINE L1 -1686 4460 4267 361 164 0 13 chr6 50940445 50940520 -138339034 - Alu SINE Alu -252 50 1 3657 186 16 31 chr6 50940520 50941218 -138338336 - L1 LINE L1 -1879 4267 3550 311 279 136 26 chr6 50991320 50991474 -138288080 - MIR3 SINE MIR -22 186 16 233 270 0 16 chr6 50991750 50991813 -138287741 + CT-rich Low_complexity Low_complexity 4 65 0 1524 254 57 34 chr6 50991875 50992382 -138287172 + LTR33 LTR ERVL 1 519 -2 2300 120 3 0 chr6 50993331 50993640 -138285914 - AluSx SINE Alu -2 310 1 304 176 176 14 chr6 50993642 50993716 -138285838 + L2 LINE L2 2992 3077 -195 2228 124 0 0 chr6 50994125 50994424 -138285130 - AluSx SINE Alu -13 299 1 224 267 17 0 chr6 50996018 50996078 -138283476 + L2 LINE L2 2615 2675 -639 303 195 26 13 chr6 50996178 50996255 -138283299 + MIR SINE MIR 175 252 -10 420 138 50 12 chr6 50996591 50996671 -138282883 - ORSL DNA AcHobo -192 83 1 229 294 118 0 chr6 50997552 50997637 -138281917 + MIR SINE MIR 86 180 -82 180 0 0 0 chr6 50997904 50997924 -138281630 + (CAT)n Simple_repeat Simple_repeat 2 21 0 396 302 119 19 chr6 50997938 50998097 -138281457 - MIR SINE MIR -18 244 70 1051 146 52 0 chr6 50999392 50999605 -138279949 + L1MA7 LINE L1 6068 6291 0 1319 269 20 3 chr6 50999625 50999971 -138279583 + MLT1J LTR MaLR 56 407 -104 450 250 115 8 chr6 50999979 51000150 -138279404 - L1MD2 LINE L1 0 7808 6194 259 239 0 86 chr6 51000150 51000267 -138279287 + MLT1J LTR MaLR 403 509 -2 230 268 0 70 chr6 51000962 51001033 -138278521 - L2 LINE L2 -1 3271 3206 215 212 0 15 chr6 51003116 51003182 -138276372 + GA-rich Low_complexity Low_complexity 3 67 0 324 0 0 0 chr6 51003811 51003847 -138275707 + (CA)n Simple_repeat Simple_repeat 2 37 0 732 279 40 53 chr6 51004396 51004622 -138274932 + L1MC/D LINE L1 5385 5606 -2202 2017 120 120 15 chr6 51004622 51004964 -138274590 - MER83B LTR ERV1 0 378 1 732 279 40 53 chr6 51004964 51005114 -138274440 + L1MC/D LINE L1 5606 5756 -2052 1761 165 127 109 chr6 51006023 51006582 -138272972 + MLT1E1 LTR MaLR 86 654 0 332 301 48 19 chr6 51006909 51007067 -138272487 - MIR SINE MIR -62 146 35 546 292 169 44 chr6 51007545 51007962 -138271592 + L2 LINE L2 2666 3121 -192 182 189 378 0 chr6 51008064 51008138 -138271416 + L2 LINE L2 3171 3272 0 586 214 55 42 chr6 51008236 51008439 -138271115 + MIR SINE MIR 38 243 -19 976 201 11 11 chr6 51008523 51008712 -138270842 + MER5A DNA MER1_type 1 189 0 182 152 0 22 chr6 51009070 51009116 -138270438 + (CAGCC)n Simple_repeat Simple_repeat 1 45 0 988 246 114 0 chr6 51010368 51010648 -138268906 - LTR16C LTR ERVL 0 491 180 257 203 43 43 chr6 51010755 51010824 -138268730 + MLT1J LTR MaLR 354 422 -89 3519 120 64 7 chr6 51010828 51011405 -138268149 - MER4B LTR ERV1 0 610 1 303 239 99 0 chr6 51011515 51011586 -138267968 - MIR SINE MIR -82 180 103 243 268 70 0 chr6 51011785 51011856 -138267698 - MIR SINE MIR -152 110 35 271 293 179 43 chr6 51011957 51012097 -138267457 + MER5B DNA MER1_type 17 175 -3 398 335 0 39 chr6 51013029 51013184 -138266370 - MIR SINE MIR -52 210 62 538 254 123 81 chr6 51013260 51013619 -138265935 + MLT1J LTR MaLR 105 478 -33 237 303 37 64 chr6 51015887 51015996 -138263558 - L3 LINE CR1 -88 1489 1384 189 352 28 0 chr6 51016012 51016083 -138263471 - L2 LINE L2 -9 3263 3191 934 296 82 42 chr6 51016252 51016702 -138262852 - L3 LINE CR1 -282 1295 828 351 356 134 4 chr6 51016723 51016962 -138262592 - L3 LINE CR1 -865 712 443 319 357 127 31 chr6 51017188 51017479 -138262075 - L3 LINE CR1 -1218 359 41 589 250 158 20 chr6 51017577 51017773 -138261781 + MIR SINE MIR 40 262 0 357 269 30 57 chr6 51018161 51018320 -138261234 + MIR SINE MIR 2 160 -48 188 184 20 0 chr6 51018536 51018585 -138260969 + (CTA)n Simple_repeat Simple_repeat 1 50 0 260 280 56 48 chr6 51018593 51018718 -138260836 - MIR SINE MIR 0 262 137 592 266 95 16 chr6 51019037 51019439 -138260115 + L1ME4a LINE L1 5344 5803 -318 410 181 76 9 chr6 51019561 51019666 -138259888 + L1ME4a LINE L1 6007 6118 -3 515 229 23 8 chr6 51019973 51020104 -138259450 - Charlie4 DNA MER1_type 0 1961 1829 209 333 74 0 chr6 51020289 51020370 -138259184 - MIR SINE MIR -75 187 101 380 305 81 30 chr6 51020443 51020679 -138258875 + MLT1K LTR MaLR 274 521 -67 371 266 195 8 chr6 51020766 51020894 -138258660 - MIR SINE MIR -96 166 15 646 300 75 35 chr6 51022103 51022330 -138257224 - MIR SINE MIR 0 262 27 368 265 68 20 chr6 51022402 51022549 -138257005 - MIR SINE MIR -78 184 31 719 261 29 55 chr6 51023660 51023967 -138255587 + L2 LINE L2 3015 3313 0 314 314 52 29 chr6 51023971 51024143 -138255411 - MIR3 SINE MIR -27 181 6 243 322 62 55 chr6 51024503 51024649 -138254905 - MIR SINE MIR 0 262 116 872 280 92 13 chr6 51024672 51025131 -138254423 - L2 LINE L2 -49 3264 2774 371 350 126 10 chr6 51026011 51026217 -138253337 - MIR SINE MIR -13 249 20 212 338 50 0 chr6 51026344 51026424 -138253130 - MIR SINE MIR -87 121 38 442 313 9 0 chr6 51026984 51027096 -138252458 - MIR SINE MIR -97 165 53 247 275 50 83 chr6 51027195 51027315 -138252239 - MIR SINE MIR -73 189 74 840 198 204 57 chr6 51027490 51027808 -138251746 + MLT1A1 LTR MaLR 1 365 0 655 212 201 0 chr6 51027875 51028059 -138251495 - MIR SINE MIR -34 228 8 1502 156 37 0 chr6 51028377 51028646 -138250908 - L1MB3 LINE L1 -2 6181 5903 516 194 41 0 chr6 51028676 51028774 -138250780 - U6 snRNA snRNA -4 103 2 439 308 27 27 chr6 51029149 51029334 -138250220 - MIR SINE MIR -74 188 4 342 319 203 27 chr6 51029528 51030120 -138249434 + L3 LINE CR1 876 1571 -6 548 317 125 0 chr6 51030344 51030552 -138249002 - MIR SINE MIR -7 255 22 940 243 11 56 chr6 51031102 51031370 -138248184 - MIR SINE MIR -5 257 2 957 197 34 29 chr6 51032004 51032212 -138247342 + MER3 DNA MER1_type 1 209 0 1265 235 76 74 chr6 51032226 51032914 -138246640 - L2 LINE L2 -1 3312 2646 331 167 137 10 chr6 51033463 51033565 -138245989 - MER117 DNA MER1_type -74 123 9 524 229 151 22 chr6 51033569 51033748 -138245806 + L2 LINE L2 2811 3012 -301 220 226 65 16 chr6 51033802 51033864 -138245690 + MIR SINE MIR 58 122 -86 852 273 24 24 chr6 51033902 51034151 -138245403 + MIR SINE MIR 14 262 0 653 210 168 14 chr6 51034261 51034475 -138245079 + MIR SINE MIR 3 249 -13 399 291 113 50 chr6 51035033 51035431 -138244123 - MLT1J2 LTR MaLR -2 448 26 222 319 7 21 chr6 51035706 51035850 -138243704 + (CA)n Simple_repeat Simple_repeat 1 142 0 2366 124 0 0 chr6 51035913 51036219 -138243335 + AluSx SINE Alu 1 306 -6 282 344 44 0 chr6 51036368 51036458 -138243096 - L2 LINE L2 -15 3257 3164 665 217 78 165 chr6 51036833 51036897 -138242657 - LTR33A LTR ERVL 0 523 455 2090 127 3 10 chr6 51036897 51037211 -138242343 + AluSx SINE Alu 1 312 0 665 217 78 165 chr6 51037211 51037709 -138241845 - LTR33A LTR ERVL -68 455 10 442 302 108 0 chr6 51038094 51038316 -138241238 + LTR33 LTR ERVL 10 255 -266 793 189 44 19 chr6 51038334 51038540 -138241014 + MER20 DNA MER1_type 9 219 0 472 291 295 4 chr6 51038548 51038799 -138240755 - MER5C DNA MER1_type 0 324 1 195 359 119 24 chr6 51039149 51039400 -138240154 - L2 LINE L2 -578 2736 2462 384 160 210 8 chr6 51039655 51039774 -138239780 + MIR SINE MIR 120 262 0 537 80 0 0 chr6 51039871 51039946 -138239608 + (CA)n Simple_repeat Simple_repeat 2 76 0 920 238 27 27 chr6 51040279 51040540 -138239014 + MIR SINE MIR 2 262 0 469 282 176 0 chr6 51040796 51040984 -138238570 + MIR SINE MIR 14 234 -28 835 156 39 7 chr6 51041451 51041605 -138237949 - MSTA LTR MaLR -269 159 1 510 233 14 14 chr6 51041606 51041752 -138237802 + L1MB7 LINE L1 6020 6165 -19 335 272 89 52 chr6 51043284 51043475 -138236079 + MIR SINE MIR 22 219 -43 185 281 73 49 chr6 51045327 51045409 -138234145 - MIR SINE MIR -62 200 117 517 283 33 50 chr6 51045827 51046007 -138233547 + MIR SINE MIR 59 235 -27 180 328 66 49 chr6 51047078 51047200 -138232354 + MIR3 SINE MIR 33 156 -52 308 211 42 63 chr6 51048815 51048910 -138230644 + L3 LINE CR1 1478 1570 -7 237 302 0 0 chr6 51049329 51049392 -138230162 + MIR SINE MIR 82 144 -64 297 321 28 9 chr6 51049604 51049713 -138229841 + L2 LINE L2 3156 3266 -6 846 235 39 15 chr6 51049876 51050086 -138229468 + MIR SINE MIR 48 262 0 727 231 16 11 chr6 51052558 51052748 -138226806 + MIR SINE MIR 65 256 -6 403 238 0 33 chr6 51052790 51052892 -138226662 + MER33 DNA MER1_type 1 92 -97 1065 191 49 0 chr6 51052892 51053159 -138226395 + MER33 DNA MER1_type 45 324 0 228 284 30 0 chr6 51054021 51054088 -138225466 + GA-rich Low_complexity Low_complexity 2 70 0 228 277 32 21 chr6 51054232 51054326 -138225228 + GA-rich Low_complexity Low_complexity 4 98 0 319 331 109 22 chr6 51054904 51055088 -138224466 + MIR3 SINE MIR 3 202 -6 401 282 55 50 chr6 51055234 51055415 -138224139 - MIR3 SINE MIR -23 185 4 381 264 34 14 chr6 51057276 51057424 -138222130 + (CAGAGA)n Simple_repeat Simple_repeat 5 155 0 211 279 7 64 chr6 51057718 51057858 -138221696 + GA-rich Low_complexity Low_complexity 6 137 0 2418 101 26 63 chr6 51058948 51059326 -138220228 + THE1B LTR MaLR 1 364 0 290 241 46 46 chr6 51059456 51059543 -138220011 - MIR SINE MIR -82 180 94 675 209 26 81 chr6 51061043 51061277 -138218277 + L2 LINE L2 3080 3300 -13 444 37 0 0 chr6 51061277 51061331 -138218223 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 541 280 74 26 chr6 51061741 51062012 -138217542 + L2 LINE L2 3003 3286 -27 2120 128 7 3 chr6 51062251 51062556 -138216998 - AluSx SINE Alu -6 306 1 375 23 0 0 chr6 51062790 51062834 -138216720 + (TA)n Simple_repeat Simple_repeat 1 44 0 * 390 21 0 0 chr6 51062833 51062880 -138216674 + (GA)n Simple_repeat Simple_repeat 2 48 0 212 59 78 0 chr6 51062882 51062933 -138216621 + (TA)n Simple_repeat Simple_repeat 1 55 0 264 30 0 0 chr6 51062934 51062967 -138216587 + (GA)n Simple_repeat Simple_repeat 2 34 0 1594 165 26 22 chr6 51062968 51063240 -138216314 - AluJo SINE Alu -39 273 1 2128 90 0 0 chr6 51063309 51063577 -138215977 - AluY SINE Alu -2 309 42 1236 170 105 10 chr6 51063749 51064043 -138215511 - MER33 DNA MER1_type 0 324 3 1004 242 5 0 chr6 51064047 51064258 -138215296 + MER58A DNA MER1_type 13 224 0 183 80 0 0 chr6 51064776 51064801 -138214753 + (TG)n Simple_repeat Simple_repeat 1 25 0 429 168 21 11 chr6 51064973 51065068 -138214486 + LTR33 LTR ERVL 1 96 -425 329 331 47 0 chr6 51066243 51066370 -138213184 - MIR SINE MIR -108 154 22 258 372 36 7 chr6 51068114 51068251 -138211303 + L2 LINE L2 3118 3258 -14 342 67 0 0 chr6 51068257 51068302 -138211252 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 1087 291 12 24 chr6 51068388 51068725 -138210829 + LTR16C LTR ERVL 149 481 -10 968 173 0 6 chr6 51070855 51071011 -138208543 + AluJb SINE Alu 147 301 -11 275 200 170 67 chr6 51071092 51071227 -138208327 + MLT1I LTR MaLR 1 149 -260 230 211 155 0 chr6 51071411 51071482 -138208072 + MLT1I LTR MaLR 326 407 -2 419 256 64 35 chr6 51072190 51072362 -138207192 + MLT1J LTR MaLR 335 511 0 185 286 33 22 chr6 51072885 51072976 -138206578 + L2 LINE L2 2945 3036 -236 384 322 175 11 chr6 51073176 51073359 -138206195 - MIR SINE MIR -48 214 2 1979 146 3 13 chr6 51074476 51074791 -138204763 + AluJo SINE Alu 1 312 0 362 224 86 37 chr6 51074830 51075064 -138204490 - L2 LINE L2 -1 3312 3108 255 287 331 6 chr6 51076021 51076178 -138203376 - MIR SINE MIR -50 212 5 1251 230 182 5 chr6 51076209 51076605 -138202949 + MLT1J LTR MaLR 46 511 0 245 376 66 20 chr6 51076642 51076839 -138202715 + L2 LINE L2 2555 2760 -554 382 314 89 63 chr6 51076966 51077016 -138202538 + L2 LINE L2 2848 2895 -377 1876 113 0 4 chr6 51077016 51077264 -138202290 - AluJb SINE Alu 0 312 66 382 314 89 63 chr6 51077264 51077627 -138201927 + L2 LINE L2 2895 3272 0 955 181 31 8 chr6 51077643 51077969 -138201585 + MSTD LTR MaLR 1 396 0 1006 271 51 27 chr6 51078095 51078230 -138201324 + LTR16C LTR ERVL 148 278 -213 2010 210 38 38 chr6 51078230 51078735 -138200819 + MLT1D LTR MaLR 1 505 0 1006 271 51 27 chr6 51078735 51078935 -138200619 + LTR16C LTR ERVL 278 491 0 241 271 107 66 chr6 51079970 51080092 -138199462 + MIR SINE MIR 23 149 -113 1726 168 52 29 chr6 51080108 51080489 -138199065 + MLT1B LTR MaLR 1 390 0 360 0 0 0 chr6 51080518 51080558 -138198996 + (ATG)n Simple_repeat Simple_repeat 1 40 0 226 283 142 26 chr6 51082070 51082183 -138197371 + MIR SINE MIR 20 145 -63 1264 236 62 46 chr6 51082283 51082736 -138196818 + MLT1C LTR MaLR 1 460 -7 396 242 49 0 chr6 51082925 51083030 -138196524 + LTR33 LTR ERVL 60 192 -329 2378 99 0 0 chr6 51083679 51083972 -138195582 + AluSc SINE Alu 1 293 -16 443 336 43 48 chr6 51084329 51084746 -138194808 + L3 LINE CR1 1080 1494 -83 376 344 41 5 chr6 51084837 51085032 -138194522 + MIR SINE MIR 4 205 -57 235 327 62 12 chr6 51086672 51086789 -138192765 + MIR SINE MIR 9 129 -79 510 237 145 68 chr6 51086838 51086924 -138192630 - MIR SINE MIR -38 224 146 1993 71 24 0 chr6 51086924 51087178 -138192376 - L1PA8 LINE L1 -2 6170 5911 510 237 145 68 chr6 51087178 51087298 -138192256 - MIR SINE MIR -116 146 2 1129 249 78 18 chr6 51087492 51087824 -138191730 - MLT1C LTR MaLR 0 467 107 2171 119 0 3 chr6 51087824 51088140 -138191414 - AluSx SINE Alu 0 312 1 1129 249 78 18 chr6 51088140 51088193 -138191361 - MLT1C LTR MaLR -360 107 59 347 298 30 0 chr6 51089140 51089274 -138190280 - MIR3 SINE MIR -53 155 34 332 171 49 12 chr6 51089305 51089387 -138190167 + ORSL DNA AcHobo 35 119 -156 215 290 80 30 chr6 51089912 51090012 -138189542 + L2 LINE L2 2966 3070 -202 488 296 40 34 chr6 51090398 51090574 -138188980 + MER5B DNA MER1_type 1 177 -1 316 279 12 0 chr6 51090777 51090863 -138188691 - MIR SINE MIR -75 133 47 280 254 15 0 chr6 51091587 51091654 -138187900 - MIR SINE MIR -64 198 131 709 222 97 6 chr6 51091709 51091885 -138187669 - MIR SINE MIR -4 258 67 221 326 11 22 chr6 51091962 51092054 -138187500 - MIR SINE MIR -145 117 27 215 291 0 18 chr6 51092093 51092148 -138187406 + (TG)n Simple_repeat Simple_repeat 1 54 0 459 291 161 9 chr6 51092342 51092565 -138186989 + MIR SINE MIR 4 260 -2 376 224 90 134 chr6 51092702 51092903 -138186651 + MIR3 SINE MIR 8 199 -9 535 266 107 74 chr6 51093401 51093616 -138185938 - MIR SINE MIR -1 261 36 1690 195 7 7 chr6 51093616 51093924 -138185630 - AluJb SINE Alu 0 312 5 535 266 107 74 chr6 51093924 51093952 -138185602 - MIR SINE MIR -226 36 10 439 301 52 39 chr6 51093968 51094197 -138185357 + MIR SINE MIR 31 262 0 2050 139 9 22 chr6 51094504 51094820 -138184734 + AluSx SINE Alu 1 312 0 575 219 67 45 chr6 51095261 51095439 -138184115 - MIR SINE MIR -43 219 38 459 209 78 8 chr6 51096425 51096554 -138183000 + MIR SINE MIR 66 203 -59 443 316 0 0 chr6 51096884 51097023 -138182531 - MIR SINE MIR -12 250 112 1234 223 67 80 chr6 51099142 51099604 -138179950 - LTR16C LTR ERVL -1 490 35 252 296 157 9 chr6 51100326 51100434 -138179120 - MIR3 SINE MIR -70 138 15 772 261 155 15 chr6 51100508 51100849 -138178705 + L2 LINE L2 2037 2425 -889 221 182 91 0 chr6 51101988 51102043 -138177511 + L2 LINE L2 3000 3059 -213 377 301 85 11 chr6 51102646 51102822 -138176732 - MIR3 SINE MIR -9 199 11 585 241 32 46 chr6 51104309 51104525 -138175029 - L2 LINE L2 -383 2931 2719 279 284 35 35 chr6 51105392 51105508 -138174046 + MIR3 SINE MIR 74 189 -19 306 271 123 67 chr6 51106208 51106492 -138173062 - L2 LINE L2 -70 3243 2944 264 213 185 19 chr6 51107515 51107623 -138171931 + MIR3 SINE MIR 35 160 -48 2434 302 172 38 chr6 51107861 51110225 -138169329 + L2 LINE L2 612 3293 -20 296 279 12 23 chr6 51112036 51112122 -138167432 - L2 LINE L2 -38 3275 3191 364 343 0 0 chr6 51112208 51112313 -138167241 - L2 LINE L2 0 3272 3168 574 240 78 26 chr6 51113150 51113304 -138166250 + MIR SINE MIR 32 193 -69 287 229 264 28 chr6 51113546 51113690 -138165864 + LTR33 LTR ERVL 1 178 -343 401 254 37 37 chr6 51113736 51113870 -138165684 + LTR33 LTR ERVL 326 459 -62 840 300 64 33 chr6 51113902 51114356 -138165198 + L1ME4a LINE L1 5653 6120 -1 542 227 75 139 chr6 51114373 51114679 -138164875 + L1ME4a LINE L1 5805 6090 -31 1654 169 30 34 chr6 51114679 51114975 -138164579 - AluJo SINE Alu -17 295 1 542 227 75 139 chr6 51114975 51114999 -138164555 + L1ME4a LINE L1 6090 6114 -7 367 314 33 0 chr6 51115460 51115581 -138163973 - MIR SINE MIR -45 217 93 233 250 97 57 chr6 51116083 51116207 -138163347 - L2 LINE L2 -23 3290 3162 568 341 176 10 chr6 51116817 51117404 -138162150 - L2 LINE L2 -921 2393 1710 468 211 70 49 chr6 51117587 51117772 -138161782 + MIR SINE MIR 59 247 -15 316 291 29 10 chr6 51120145 51120248 -138159306 + MIR SINE MIR 41 145 -63 410 323 154 0 chr6 51120695 51120915 -138158639 - MIR SINE MIR -2 260 7 272 289 215 0 chr6 51120935 51121070 -138158484 + MIR SINE MIR 91 254 -8 194 277 50 30 chr6 51121324 51121374 -138158180 - MIR SINE MIR -117 145 94 216 303 28 18 chr6 51121374 51121483 -138158071 + MIR SINE MIR 2 111 -151 710 318 31 0 chr6 51121880 51122103 -138157451 + MIR SINE MIR 23 252 -10 301 360 24 0 chr6 51122188 51122313 -138157241 + MIR3 SINE MIR 53 180 -28 299 320 39 0 chr6 51122723 51122826 -138156728 - MER112 DNA MER1_type -6 254 148 337 370 42 9 chr6 51123875 51124091 -138155463 - L2 LINE L2 -4 3309 3087 561 284 87 20 chr6 51124531 51124632 -138154922 - MIR SINE MIR -6 256 163 555 234 90 12 chr6 51124632 51124799 -138154755 - MER104 DNA MER2_type 0 180 1 561 284 87 20 chr6 51124799 51124937 -138154617 - MIR SINE MIR -99 163 6 629 228 60 0 chr6 51125656 51125823 -138153731 + MER104 DNA MER2_type 1 177 -3 2198 127 0 3 chr6 51126588 51126887 -138152667 - AluSx SINE Alu -14 298 1 594 260 95 97 chr6 51126887 51127341 -138152213 - L2 LINE L2 -6 3307 2855 2318 130 0 0 chr6 51127660 51127968 -138151586 - AluSx SINE Alu -4 308 1 1232 246 94 36 chr6 51128813 51128960 -138150594 + LTR16C LTR ERVL 52 189 -302 2412 84 0 13 chr6 51128960 51129271 -138150283 + AluSx SINE Alu 1 307 -5 1232 246 94 36 chr6 51129271 51129537 -138150017 + LTR16C LTR ERVL 189 489 -2 192 279 63 13 chr6 51130134 51130213 -138149341 + MIR SINE MIR 59 141 -67 484 254 0 25 chr6 51130269 51130391 -138149163 - L2 LINE L2 -1 3312 3194 561 279 7 0 chr6 51131387 51131523 -138148031 + MIR3 SINE MIR 26 162 -46 259 188 59 82 chr6 51131524 51131609 -138147945 - MIR SINE MIR 0 262 180 685 290 21 5 chr6 51131655 51131848 -138147706 - MIR SINE MIR -59 203 8 246 239 174 43 chr6 51132054 51132146 -138147408 - L2 LINE L2 0 3313 3210 183 350 36 29 chr6 51132182 51132322 -138147232 - L2 LINE L2 -228 3044 2904 368 264 22 11 chr6 51132491 51132582 -138146972 + L2 LINE L2 3222 3313 0 201 294 106 0 chr6 51132609 51132694 -138146860 - MIR SINE MIR -68 140 47 687 268 56 48 chr6 51132694 51133080 -138146474 + MLT1H LTR MaLR 22 549 0 180 295 0 16 chr6 51133155 51133216 -138146338 - L2 LINE L2 -221 3051 2992 294 238 0 0 chr6 51133217 51133280 -138146274 - L2 LINE L2 -2 3270 3208 223 287 245 29 chr6 51133279 51133598 -138145956 - L2 LINE L2 -276 2996 2614 * 241 283 10 40 chr6 51134459 51134558 -138144996 + GA-rich Low_complexity Low_complexity 4 99 0 225 229 180 0 chr6 51136518 51136579 -138142975 + MIR SINE MIR 181 252 -10 210 245 20 0 chr6 51136545 51136594 -138142960 + L2 LINE L2 3223 3272 0 * 270 0 0 0 chr6 51136859 51136889 -138142665 + (T)n Simple_repeat Simple_repeat 1 30 0 202 333 109 24 chr6 51136940 51137105 -138142449 - MIR SINE MIR 0 262 84 183 173 0 0 chr6 51137762 51137814 -138141740 + (CA)n Simple_repeat Simple_repeat 2 53 0 572 275 21 25 chr6 51138270 51138473 -138141081 + MIR3 SINE MIR 2 205 -3 309 359 8 8 chr6 51139415 51139532 -138140022 - MIR SINE MIR -29 233 117 266 369 14 14 chr6 51140133 51140274 -138139280 - MIR SINE MIR -102 160 20 206 398 10 10 chr6 51140764 51140862 -138138692 - MIR SINE MIR -145 117 20 581 288 88 12 chr6 51141244 51141484 -138138070 - MIR SINE MIR 0 262 5 294 149 0 90 chr6 51141989 51142056 -138137498 + Tigger5 DNA MER2_type 2257 2317 -6 429 169 13 0 chr6 51142058 51142135 -138137419 - Tigger5 DNA MER2_type -2244 79 2 726 304 9 0 chr6 51143026 51143243 -138136311 + MIR SINE MIR 44 262 0 275 305 51 42 chr6 51143595 51143713 -138135841 + L3 LINE CR1 795 913 -664 278 349 74 35 chr6 51143875 51144310 -138135244 + L2 LINE L2 2015 2466 -848 1067 288 103 14 chr6 51144342 51144932 -138134622 - L1ME3A LINE L1 -8 6154 5513 512 264 81 28 chr6 51145758 51145948 -138133606 - MIR SINE MIR -60 202 3 238 330 39 90 chr6 51145962 51146195 -138133359 + L2 LINE L2 2992 3212 -60 372 165 0 0 chr6 51146480 51146571 -138132983 + CT-rich Low_complexity Low_complexity 2 92 0 360 0 0 0 chr6 51146728 51146768 -138132786 + (CA)n Simple_repeat Simple_repeat 2 41 0 261 119 0 0 chr6 51146770 51146812 -138132742 + (GA)n Simple_repeat Simple_repeat 1 42 0 644 253 122 27 chr6 51147279 51147500 -138132054 - MIR SINE MIR -8 254 13 269 304 143 0 chr6 51147513 51147625 -138131929 + MIR3 SINE MIR 35 162 -46 481 318 20 0 chr6 51147877 51148028 -138131526 + MIR SINE MIR 79 232 -30 367 279 153 54 chr6 51148182 51148404 -138131150 - MIR SINE MIR -12 250 7 811 278 14 0 chr6 51150245 51150454 -138129100 - MIR SINE MIR -12 250 39 257 241 0 0 chr6 51150457 51150511 -138129043 - L3 LINE CR1 -98 1479 1426 288 238 16 0 chr6 51150607 51150670 -138128884 + L2 LINE L2 3247 3310 -3 446 247 154 0 chr6 51152175 51152337 -138127217 + MER96B DNA MER1_type? 230 416 -1 521 219 42 0 chr6 51152837 51152956 -138126598 - L2 LINE L2 0 3313 3190 253 264 27 73 chr6 51153161 51153271 -138126283 + MIR SINE MIR 46 150 -112 435 301 151 14 chr6 51153426 51153645 -138125909 + MIR SINE MIR 13 261 -1 214 265 145 0 chr6 51153653 51153736 -138125818 + MIR3 SINE MIR 90 184 -24 210 328 168 0 chr6 51157912 51158031 -138121523 - MIR3 SINE MIR -1 207 69 243 352 19 9 chr6 51158150 51158255 -138121299 + MIR3 SINE MIR 56 161 -47 682 276 108 4 chr6 51158309 51158541 -138121013 + MIR SINE MIR 3 258 -4 399 235 25 43 chr6 51158940 51159102 -138120452 + GA-rich Low_complexity Low_complexity 6 164 0 359 215 50 91 chr6 51159215 51159336 -138120218 + L2 LINE L2 3192 3307 -6 191 260 110 14 chr6 51159944 51160017 -138119537 + MIR SINE MIR 27 106 -102 578 312 99 0 chr6 51160038 51160259 -138119295 - MIR SINE MIR -14 248 6 341 267 35 17 chr6 51160260 51160376 -138119178 + MIR SINE MIR 104 221 -41 2443 100 0 0 chr6 51160459 51160758 -138118796 - AluSq SINE Alu -14 299 1 1341 276 85 8 chr6 51160863 51161345 -138118209 + LTR33 LTR ERVL 1 519 -2 253 176 144 157 chr6 51161396 51161511 -138118043 + MIR SINE MIR 40 154 -108 2329 114 0 3 chr6 51161511 51161818 -138117736 + AluSx SINE Alu 1 306 -6 253 176 144 157 chr6 51161818 51161855 -138117699 + MIR SINE MIR 154 190 -72 375 332 38 60 chr6 51161988 51162223 -138117331 + MLT1K LTR MaLR 169 398 -190 535 273 19 25 chr6 51162488 51162649 -138116905 + MER91B DNA MER1_type 23 182 -8 2176 114 19 7 chr6 51163110 51163417 -138116137 + AluSx SINE Alu 2 312 0 304 286 22 11 chr6 51164448 51164539 -138115015 + MLT1K LTR MaLR 167 258 -330 325 340 0 10 chr6 51164561 51164664 -138114890 - L2 LINE L2 -19 3294 3193 336 208 10 42 chr6 51164790 51164886 -138114668 + MLT1K LTR MaLR 470 562 -26 21 0 0 0 chr6 51165158 51165179 -138114375 + AT_rich Low_complexity Low_complexity 1 21 0 324 237 7 82 chr6 51165204 51165339 -138114215 - MIR3 SINE MIR -2 206 82 666 190 153 6 chr6 51165452 51165615 -138113939 + MER5A DNA MER1_type 3 189 0 665 206 161 0 chr6 51165623 51165778 -138113776 - MER5A DNA MER1_type 0 189 10 227 161 18 0 chr6 51167747 51167803 -138111751 + (TGGA)n Simple_repeat Simple_repeat 3 59 0 22 56 0 0 chr6 51168290 51168326 -138111228 + AT_rich Low_complexity Low_complexity 1 36 0 261 242 42 32 chr6 51169946 51170041 -138109513 - MIR SINE MIR -94 114 19 375 23 0 0 chr6 51170070 51170114 -138109440 + (CA)n Simple_repeat Simple_repeat 2 45 0 527 265 68 0 chr6 51171088 51171220 -138108334 + MIR SINE MIR 96 236 -26 593 276 87 0 chr6 51172061 51172246 -138107308 - MIR SINE MIR -16 246 46 209 390 0 0 chr6 51173459 51173536 -138106018 + L2 LINE L2 3232 3308 -5 472 259 15 89 chr6 51173969 51174239 -138105315 - MER112 DNA MER1_type -2 254 5 338 265 143 41 chr6 51174651 51174798 -138104756 - MIR3 SINE MIR -12 196 35 240 240 0 0 chr6 51175330 51175380 -138104174 + L2 LINE L2 3262 3311 -2 229 186 0 51 chr6 51175786 51175845 -138103709 + GA-rich Low_complexity Low_complexity 4 59 0 321 47 0 0 chr6 51176181 51176224 -138103330 + (CA)n Simple_repeat Simple_repeat 1 43 0 586 281 63 24 chr6 51177297 51177546 -138102008 - MIR SINE MIR -3 259 1 318 252 50 67 chr6 51177649 51177768 -138101786 - L2 LINE L2 -3 3310 3194 588 318 69 45 chr6 51177771 51178149 -138101405 + L2 LINE L2 2422 2808 -506 7863 27 2 0 chr6 51178516 51180249 -138099305 + L1PA4 LINE L1 4419 6153 -2 266 284 0 20 chr6 51180403 51180505 -138099049 - MIR SINE MIR -115 147 48 450 0 0 0 chr6 51182038 51182088 -138097466 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 1379 68 6 0 chr6 51182088 51182250 -138097304 - AluSp SINE Alu -26 287 125 317 276 0 13 chr6 51182255 51182331 -138097223 - MIR SINE MIR -107 155 81 208 331 44 44 chr6 51183061 51183309 -138096245 + L2 LINE L2 2632 2879 -435 460 208 208 0 chr6 51183367 51183511 -138096043 + MER5B DNA MER1_type 3 176 -2 1148 224 16 8 chr6 51183629 51183889 -138095665 - MIR SINE MIR 0 262 3 355 306 97 0 chr6 51184056 51184180 -138095374 - L2 LINE L2 -240 3032 2897 400 309 94 13 chr6 51184481 51184630 -138094924 + L2 LINE L2 3112 3272 0 225 298 32 11 chr6 51185132 51185226 -138094328 - MIR SINE MIR -93 115 20 691 268 14 43 chr6 51185455 51185664 -138093890 + MIR SINE MIR 49 251 -11 221 235 67 67 chr6 51185717 51185836 -138093718 + MIR SINE MIR 98 216 -46 379 280 28 0 chr6 51186471 51186578 -138092976 + MIR SINE MIR 54 163 -99 463 271 94 6 chr6 51186661 51186831 -138092723 + MIR SINE MIR 8 192 -70 339 277 62 67 chr6 51186905 51186988 -138092566 + MIR SINE MIR 13 95 -167 443 187 0 149 chr6 51186988 51187049 -138092505 - MER81 DNA DNA 0 114 79 1990 100 67 0 chr6 51187049 51187341 -138092213 + AluSq SINE Alu 1 310 0 443 187 0 149 chr6 51187341 51187410 -138092144 - MER81 DNA DNA -35 79 1 339 277 62 67 chr6 51187410 51187521 -138092033 + MIR SINE MIR 95 206 -56 785 268 64 4 chr6 51187531 51187766 -138091788 - MIR SINE MIR -7 255 7 617 252 49 64 chr6 51189103 51189369 -138090185 + MIR SINE MIR 1 262 0 182 250 62 16 chr6 51189396 51189460 -138090094 + MIR SINE MIR 83 149 -113 238 263 0 13 chr6 51189665 51189741 -138089813 + GA-rich Low_complexity Low_complexity 1 75 0 330 26 0 0 chr6 51190432 51190471 -138089083 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 2062 117 3 3 chr6 51190473 51190755 -138088799 - AluSx SINE Alu -30 282 1 2396 18 0 0 chr6 51190816 51191097 -138088457 - L1PA2 LINE L1 -30 6125 5845 356 0 0 0 chr6 51191097 51191137 -138088417 + L1PA2 LINE L1 6106 6152 -3 233 17 69 69 chr6 51191140 51191198 -138088356 + A-rich Low_complexity Low_complexity 2 59 0 211 250 19 0 chr6 51191389 51191441 -138088113 - MIR SINE MIR -70 192 140 288 238 40 89 chr6 51191799 51191900 -138087654 + MIR SINE MIR 112 207 -55 963 245 34 0 chr6 51192034 51192238 -138087316 - MIR SINE MIR -2 260 50 209 300 114 0 chr6 51192331 51192401 -138087153 + L2 LINE L2 3122 3199 -73 284 143 18 0 chr6 51192841 51192897 -138086657 + (CAT)n Simple_repeat Simple_repeat 3 59 0 309 68 0 0 chr6 51192947 51192991 -138086563 + (CA)n Simple_repeat Simple_repeat 2 45 0 251 336 75 0 chr6 51193121 51193228 -138086326 + L2 LINE L2 3153 3267 -5 192 208 56 69 chr6 51193752 51193824 -138085730 + MIR SINE MIR 106 176 -86 540 318 6 0 chr6 51194219 51194398 -138085156 + (TG)n Simple_repeat Simple_repeat 1 180 0 247 265 144 50 chr6 51194646 51194827 -138084727 - MIR3 SINE MIR -1 207 10 237 167 42 0 chr6 51196277 51196323 -138083231 - MER5A DNA MER1_type -137 52 4 343 143 0 43 chr6 51196421 51196491 -138083063 + MER106A DNA MER1_type 2 68 -168 330 198 83 0 chr6 51196556 51196663 -138082891 + MER106A DNA MER1_type 108 199 -37 228 269 259 9 chr6 51197637 51197745 -138081809 - MIR SINE MIR -82 180 46 318 148 0 0 chr6 51199176 51199230 -138080324 + (CA)n Simple_repeat Simple_repeat 2 55 0 348 24 0 0 chr6 51200847 51200888 -138078666 + (CA)n Simple_repeat Simple_repeat 1 41 0 366 223 109 9 chr6 51201613 51201726 -138077828 - MIR3 SINE MIR -44 164 65 237 357 0 42 chr6 51202328 51202471 -138077083 + G-rich Low_complexity Low_complexity 1 137 0 211 246 318 24 chr6 51202920 51203046 -138076508 + MIR3 SINE MIR 24 186 -22 617 244 0 0 chr6 51203394 51203529 -138076025 - L1ME LINE L1 -405 5716 5582 194 221 0 73 chr6 51203843 51203911 -138075643 + L2 LINE L2 3227 3289 -24 306 264 117 46 chr6 51203981 51204178 -138075376 + L3b LINE CR1 1205 1415 -168 2114 125 0 0 chr6 51204898 51205201 -138074353 - AluSx SINE Alu 0 305 3 446 305 42 26 chr6 51205338 51205528 -138074026 - MIR SINE MIR -50 212 20 359 275 167 14 chr6 51205693 51205831 -138073723 + MIR3 SINE MIR 14 172 -36 707 296 44 0 chr6 51206098 51206301 -138073253 - MIR SINE MIR -28 234 23 623 289 75 13 chr6 51207076 51207315 -138072239 + MIR SINE MIR 9 262 0 186 284 27 27 chr6 51207375 51207449 -138072105 - L2 LINE L2 -512 2802 2729 222 295 114 20 chr6 51207963 51208112 -138071442 - MIR SINE MIR -6 256 94 618 284 45 37 chr6 51208699 51209051 -138070503 - L2 LINE L2 -1356 1958 1604 404 286 56 30 chr6 51209901 51210132 -138069422 + LTR33A LTR ERVL 265 501 -22 499 282 92 12 chr6 51210823 51210986 -138068568 + MIR SINE MIR 84 259 -3 649 290 111 17 chr6 51210996 51211293 -138068261 - LTR16C LTR ERVL -5 486 162 202 337 35 128 chr6 51211426 51211684 -138067870 + L2 LINE L2 3038 3271 -1 379 317 24 30 chr6 51213230 51213397 -138066157 + MIR3 SINE MIR 35 200 -8 440 235 45 38 chr6 51213430 51213562 -138065992 - MER5A DNA MER1_type 0 189 57 277 306 22 61 chr6 51213432 51213612 -138065942 + MER5A DNA MER1_type 17 189 0 * 201 360 124 26 chr6 51213723 51213876 -138065678 - L2 LINE L2 -3 3269 3102 2144 133 32 35 chr6 51215105 51215481 -138064073 + THE1C LTR MaLR 1 375 0 308 275 66 0 chr6 51215914 51216005 -138063549 - MIR SINE MIR -72 190 94 754 302 95 18 chr6 51216228 51216566 -138062988 + LTR16C LTR ERVL 3 366 -125 2168 161 45 10 chr6 51216572 51216969 -138062585 - MSTC LTR MaLR -17 411 1 641 192 0 0 chr6 51216974 51217094 -138062460 + LTR16C LTR ERVL 372 491 0 336 297 148 8 chr6 51217102 51217230 -138062324 - MIR3 SINE MIR -33 175 30 250 306 10 51 chr6 51217714 51217812 -138061742 - MIR3 SINE MIR -22 186 93 231 340 132 62 chr6 51218156 51219583 -138059971 + L2 LINE L2 970 2496 -818 255 271 0 0 chr6 51220236 51220295 -138059259 + CT-rich Low_complexity Low_complexity 2 60 0 372 280 8 40 chr6 51220805 51220930 -138058624 - MIR3 SINE MIR -3 205 85 291 93 0 0 chr6 51221214 51221257 -138058297 + (TG)n Simple_repeat Simple_repeat 1 43 0 327 319 101 18 chr6 51221391 51221560 -138057994 + MIR3 SINE MIR 25 207 -1 22 0 0 0 chr6 51221619 51221641 -138057913 + AT_rich Low_complexity Low_complexity 1 22 0 229 308 38 36 chr6 51221987 51222044 -138057510 - MIR SINE MIR -3 259 204 1647 200 10 3 chr6 51222044 51222339 -138057215 - AluJb SINE Alu -15 297 1 229 308 38 36 chr6 51222339 51222476 -138057078 - MIR SINE MIR -58 204 2 341 352 103 48 chr6 51222500 51222858 -138056696 - L2 LINE L2 -2 3270 2893 226 351 0 36 chr6 51223275 51223440 -138056114 + C-rich Low_complexity Low_complexity 2 160 0 208 308 0 0 chr6 51223941 51223993 -138055561 - L2 LINE L2 -82 3190 3139 2267 109 7 0 chr6 51224454 51224747 -138054807 - AluSx SINE Alu -17 295 1 221 233 0 0 chr6 51224758 51224801 -138054753 - L2 LINE L2 -20 3252 3210 566 150 33 83 chr6 51225844 51225964 -138053590 + MER81 DNA DNA 1 114 0 235 0 0 54 chr6 51226510 51226547 -138053007 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 388 323 36 55 chr6 51227398 51227618 -138051936 - L1MC4 LINE L1 -1 8041 7826 3387 225 84 21 chr6 51227676 51229628 -138049926 - L1ME2 LINE L1 -23 6141 4063 556 184 94 144 chr6 51229633 51229889 -138049665 + LTR40a LTR ERVL 6 248 -271 991 210 13 46 chr6 51229901 51230082 -138049472 - MLT1A2 LTR MaLR -144 230 57 2189 132 48 28 chr6 51230082 51230439 -138049115 - THE1B LTR MaLR 0 364 1 991 210 13 46 chr6 51230439 51230495 -138049059 - MLT1A2 LTR MaLR -317 57 1 2512 239 73 46 chr6 51230510 51231459 -138048095 - L1ME2 LINE L1 -2567 3579 2606 706 264 139 51 chr6 51232005 51232474 -138047080 + MLT1J LTR MaLR 1 510 -1 343 200 80 0 chr6 51232476 51232551 -138047003 - MER117 DNA MER1_type -113 84 4 297 299 60 34 chr6 51232580 51232697 -138046857 + L2 LINE L2 3153 3272 0 968 217 134 16 chr6 51232888 51233141 -138046413 + MLT1C LTR MaLR 185 467 0 607 268 27 33 chr6 51233264 51233447 -138046107 + MIR SINE MIR 80 261 -1 342 0 0 0 chr6 51234949 51234987 -138044567 + (CA)n Simple_repeat Simple_repeat 2 39 0 249 83 0 0 chr6 51235037 51235073 -138044481 + (CA)n Simple_repeat Simple_repeat 1 36 0 207 69 0 0 chr6 51235117 51235146 -138044408 + (CA)n Simple_repeat Simple_repeat 2 30 0 404 191 0 0 chr6 51235218 51235281 -138044273 - MER5B DNA MER1_type -5 173 111 2523 244 54 16 chr6 51235292 51236092 -138043462 + L1ME3A LINE L1 5341 6170 0 404 282 40 24 chr6 51236092 51236216 -138043338 - MER5B DNA MER1_type -48 130 5 384 304 51 65 chr6 51236237 51236454 -138043100 + MIR SINE MIR 34 247 -15 365 318 80 0 chr6 51237228 51237379 -138042175 + MIR3 SINE MIR 30 192 -16 254 278 185 0 chr6 51239464 51239572 -138039982 - MLT1L LTR MaLR 0 615 488 * 336 242 0 22 chr6 51239565 51239656 -138039898 - MLT1H1 LTR MaLR -444 111 23 286 179 0 131 chr6 51239675 51239759 -138039795 + MLT1H LTR MaLR 477 549 0 190 295 123 57 chr6 51240396 51240518 -138039036 - L2 LINE L2 -7 3265 3136 449 267 30 0 chr6 51240571 51240672 -138038882 - L2 LINE L2 -10 3303 3200 802 289 104 6 chr6 51240861 51241151 -138038403 + LTR16C LTR ERVL 139 464 -27 1713 87 146 0 chr6 51241151 51241404 -138038150 + AluSc SINE Alu 1 290 -19 802 289 104 6 chr6 51241404 51241431 -138038123 + LTR16C LTR ERVL 464 487 -4 361 333 22 0 chr6 51241468 51241603 -138037951 - MIR SINE MIR -17 245 108 231 298 21 32 chr6 51241646 51241740 -138037814 + MIR SINE MIR 52 144 -64 745 181 52 7 chr6 51242931 51243086 -138036468 - MIR SINE MIR -61 201 40 351 291 35 69 chr6 51243192 51243395 -138036159 + L2 LINE L2 3117 3312 -1 429 110 0 0 chr6 51243494 51243567 -138035987 + (TG)n Simple_repeat Simple_repeat 2 74 0 330 308 70 70 chr6 51344516 51344944 -137934610 + L1ME2 LINE L1 5682 6112 -52 642 192 16 16 chr6 51344956 51345209 -137934345 + GA-rich Low_complexity Low_complexity 1 253 0 221 234 13 78 chr6 51346104 51346181 -137933373 - MIR3 SINE MIR -4 204 133 288 0 0 0 chr6 51346265 51346297 -137933257 + (TG)n Simple_repeat Simple_repeat 1 32 0 266 321 6 43 chr6 51346416 51346578 -137932976 + GA-rich Low_complexity Low_complexity 2 157 0 503 181 48 9 chr6 51347201 51347306 -137932248 + MIR SINE MIR 70 178 -84 885 251 135 6 chr6 51348103 51348422 -137931132 + MLT1C LTR MaLR 7 366 -101 613 277 108 26 chr6 51348731 51348962 -137930592 + MIR SINE MIR 13 262 0 245 290 37 28 chr6 51349083 51349190 -137930364 - L2 LINE L2 -215 3057 2950 332 352 83 4 chr6 51349423 51349653 -137929901 - L2 LINE L2 -642 2672 2425 317 281 61 35 chr6 51349663 51349777 -137929777 + L2 LINE L2 3193 3309 -4 195 345 110 24 chr6 51349769 51349978 -137929576 - L2 LINE L2 -887 2427 2201 * 195 333 139 19 chr6 51350821 51350929 -137928625 + MIR SINE MIR 21 141 -67 4319 168 45 12 chr6 51351083 51351841 -137927713 + LTR39 LTR ERV1 1 783 0 2180 115 0 10 chr6 51351936 51352240 -137927314 + AluSx SINE Alu 3 303 -9 2592 118 58 21 chr6 51352905 51353337 -137926217 + LTR7 LTR ERV1 1 448 -2 221 119 24 0 chr6 51353742 51353784 -137925770 + GA-rich Low_complexity Low_complexity 2 44 0 236 368 85 35 chr6 51354274 51354475 -137925079 - L2 LINE L2 -865 2449 2239 339 338 36 19 chr6 51354867 51355021 -137924533 + MIR3 SINE MIR 2 159 -49 207 218 0 36 chr6 51355698 51355753 -137923801 - L2 LINE L2 -3 3269 3217 278 108 31 46 chr6 51356496 51356561 -137922993 + MLT1J1 LTR MaLR 383 446 0 444 281 234 0 chr6 51357697 51357868 -137921686 + MIR SINE MIR 2 212 -50 261 200 0 0 chr6 51358953 51358998 -137920556 - L2 LINE L2 -10 3303 3259 250 270 214 18 chr6 51359821 51360093 -137919461 - L2 LINE L2 -1 3271 2832 241 352 11 0 chr6 51360116 51360204 -137919350 - L2 LINE L2 -653 2661 2573 301 325 94 8 chr6 51362342 51362459 -137917095 + MIR SINE MIR 16 142 -66 867 262 51 13 chr6 51363086 51363323 -137916231 - MIR SINE MIR -10 252 7 492 319 82 22 chr6 51363788 51364020 -137915534 - MIR SINE MIR -1 261 16 249 306 90 75 chr6 51364582 51364837 -137914717 + L2 LINE L2 2153 2411 -903 240 247 60 108 chr6 51365198 51365364 -137914190 + L2 LINE L2 2924 3081 -191 793 219 0 47 chr6 51365567 51365843 -137913711 - L1MA4 LINE L1 0 6300 6047 676 265 7 0 chr6 51365847 51365998 -137913556 - MIR SINE MIR -108 154 3 645 264 137 66 chr6 51366028 51366407 -137913147 + MLT1L LTR MaLR 144 558 -57 4172 87 7 2 chr6 51366407 51366956 -137912598 + MER41A LTR ERV1 1 552 -2 645 264 137 66 chr6 51366956 51367000 -137912554 + MLT1L LTR MaLR 558 597 -18 304 222 16 0 chr6 51367013 51367076 -137912478 + L2 LINE L2 3249 3312 -1 204 182 182 0 chr6 51367146 51367190 -137912364 + MIR3 SINE MIR 105 156 -52 222 91 0 0 chr6 51368093 51368126 -137911428 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 250 302 135 16 chr6 51368126 51368252 -137911302 - L2 LINE L2 -13 3259 3119 279 373 40 13 chr6 51368358 51368508 -137911046 - L2 LINE L2 -213 3059 2906 554 216 69 0 chr6 51369613 51369729 -137909825 + L2 LINE L2 3189 3312 -1 316 325 24 0 chr6 51369766 51369849 -137909705 + L2 LINE L2 3229 3313 0 425 326 65 0 chr6 51369905 51370043 -137909511 - L2 LINE L2 -4 3268 3122 1884 171 0 7 chr6 51370049 51370353 -137909201 + AluJo SINE Alu 1 302 -10 809 245 48 11 chr6 51370444 51370713 -137908841 + LTR33 LTR ERVL 3 281 -240 206 333 97 42 chr6 51371241 51371385 -137908169 - L2 LINE L2 0 3272 3121 2090 159 20 11 chr6 51371737 51372095 -137907459 + MLT1A1 LTR MaLR 1 361 -4 686 192 15 0 chr6 51372184 51372314 -137907240 + LTR54B LTR ERV1 8 139 -359 327 65 0 0 chr6 51372328 51372374 -137907180 + (GGGAA)n Simple_repeat Simple_repeat 5 50 0 354 279 75 7 chr6 51373006 51373153 -137906401 + L1ME3A LINE L1 5795 5951 -219 725 250 29 29 chr6 51373189 51373393 -137906161 - L2 LINE L2 -414 2900 2697 814 319 68 11 chr6 51373474 51373856 -137905698 - Charlie7 DNA MER1_type -1926 686 283 976 145 34 125 chr6 51374065 51374417 -137905137 + MER33 DNA MER1_type 5 324 0 200 325 86 43 chr6 51374619 51374736 -137904818 + MIR3 SINE MIR 65 186 -22 196 116 93 23 chr6 51375655 51375698 -137903856 + L2 LINE L2 3016 3061 -211 305 299 7 21 chr6 51375931 51376075 -137903479 + GA-rich Low_complexity Low_complexity 4 145 0 1486 239 48 66 chr6 51376111 51376475 -137903079 - L1MEc LINE L1 -3451 2764 2395 3345 169 21 10 chr6 51376475 51377092 -137902462 - L1MB2 LINE L1 -1 6170 5547 1486 239 48 66 chr6 51377092 51377549 -137902005 - L1MEc LINE L1 -3820 2395 1981 259 270 126 9 chr6 51378113 51378224 -137901330 + MLT1L LTR MaLR 144 267 -348 233 336 71 9 chr6 51378630 51378743 -137900811 - L2 LINE L2 0 3272 3153 23 0 0 0 chr6 51379544 51379567 -137899987 + AT_rich Low_complexity Low_complexity 1 23 0 228 271 29 0 chr6 51379645 51379715 -137899839 - LTR67 LTR ERVL -10 547 476 407 264 148 13 chr6 51379752 51379907 -137899647 + MER5B DNA MER1_type 2 177 -1 830 187 39 0 chr6 51379916 51380071 -137899483 - MER5B DNA MER1_type 0 178 18 232 202 0 135 chr6 51380098 51380187 -137899367 - MER5B DNA MER1_type 0 178 102 2246 99 0 7 chr6 51380679 51380981 -137898573 + AluSc SINE Alu 1 300 -9 393 217 182 78 chr6 51380988 51381246 -137898308 + L1MC4a LINE L1 5677 5961 -1847 232 335 84 42 chr6 51381630 51381845 -137897709 - L2 LINE L2 -183 3089 2866 2337 123 0 0 chr6 51382105 51382414 -137897140 + AluSg SINE Alu 1 309 -1 1519 208 106 17 chr6 51382919 51383333 -137896221 - MLT1C LTR MaLR -16 451 1 242 288 17 0 chr6 51384035 51384094 -137895460 + MIR SINE MIR 33 92 -116 238 266 159 26 chr6 51384117 51384230 -137895324 + MIR3 SINE MIR 64 191 -17 265 284 68 91 chr6 51384679 51384855 -137894699 - MIR3 SINE MIR -27 181 10 2141 124 0 0 chr6 51385088 51385399 -137894155 - AluSc SINE Alu 0 311 1 337 279 85 39 chr6 51385544 51385673 -137893881 + MIR3 SINE MIR 21 155 -53 291 349 129 25 chr6 51386004 51386322 -137893232 + L2 LINE L2 2916 3266 -6 3447 123 45 87 chr6 51386324 51387050 -137892504 + LTR1 LTR ERV1 2 697 -88 225 312 13 0 chr6 51387065 51387142 -137892412 + GA-rich Low_complexity Low_complexity 5 82 0 396 271 18 12 chr6 51387811 51387977 -137891577 - L1ME4a LINE L1 -210 5911 5745 497 251 171 38 chr6 51388221 51388432 -137891122 - MIR SINE MIR 0 262 24 588 285 35 23 chr6 51388652 51388824 -137890730 + MIR SINE MIR 15 188 -74 328 265 24 0 chr6 51389066 51389149 -137890405 - MIR SINE MIR 0 262 178 197 342 89 0 chr6 51389534 51389613 -137889941 + L2 LINE L2 3187 3272 0 464 320 115 32 chr6 51389627 51389880 -137889674 + L3 LINE CR1 1297 1570 -7 2264 210 50 18 chr6 51390301 51390858 -137888696 - MLT1E2 LTR MaLR 0 626 52 412 290 48 14 chr6 51392257 51392402 -137887152 + L2 LINE L2 3123 3272 0 487 284 19 34 chr6 51393502 51393710 -137885844 + MIR SINE MIR 16 220 -42 229 188 62 16 chr6 51394130 51394194 -137885360 + MIR SINE MIR 180 246 -16 377 235 24 0 chr6 51394287 51394372 -137885182 - MER94 DNA DNA -35 99 13 193 240 0 20 chr6 51395271 51395321 -137884233 - L2 LINE L2 -3 3310 3262 186 250 50 0 chr6 51396095 51396155 -137883399 + L2 LINE L2 3000 3062 -251 670 266 45 15 chr6 51396491 51396690 -137882864 - MLT1K LTR MaLR 0 588 384 290 303 91 42 chr6 51396754 51396919 -137882635 - MLT1K LTR MaLR -292 296 124 1238 330 41 31 chr6 51397157 51397221 -137882333 - L3 LINE CR1 -1 1576 1514 2040 82 68 11 chr6 51397221 51397501 -137882053 - AluSg SINE Alu -10 300 5 1238 330 41 31 chr6 51397501 51398184 -137881370 - L3 LINE CR1 -63 1514 821 344 298 93 31 chr6 51398877 51399312 -137880242 + L1MC/D LINE L1 5258 5723 -447 2427 128 66 0 chr6 51399351 51399717 -137879837 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr6 51399741 51399762 -137879792 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr6 51400067 51400106 -137879448 + AT_rich Low_complexity Low_complexity 1 39 0 270 259 37 9 chr6 51400560 51400668 -137878886 + MIR3 SINE MIR 50 160 -48 296 271 41 33 chr6 51401445 51401567 -137877987 + MIR SINE MIR 49 171 -91 278 250 169 20 chr6 51401961 51402109 -137877445 + MIR3 SINE MIR 32 201 -7 537 268 112 13 chr6 51402180 51402404 -137877150 - L2 LINE L2 -72 3241 2996 586 232 56 15 chr6 51402487 51402685 -137876869 - L2 LINE L2 -1835 1479 1274 486 257 236 10 chr6 51403012 51403304 -137876250 - LTR16C LTR ERVL -30 461 104 186 138 0 0 chr6 51405363 51405392 -137874162 + MIR SINE MIR 217 245 -17 225 256 72 40 chr6 51405638 51405763 -137873791 + L2 LINE L2 3179 3307 -6 259 314 25 34 chr6 51405928 51406046 -137873508 - MIR3 SINE MIR -7 201 85 2363 101 20 0 chr6 51406491 51406837 -137872717 - L1MA1 LINE L1 0 6302 5950 397 358 8 0 chr6 51407808 51407942 -137871612 + MIR3 SINE MIR 27 161 -47 467 245 196 12 chr6 51407942 51408105 -137871449 + MER20 DNA MER1_type 2 194 -25 196 204 19 37 chr6 51408127 51408181 -137871373 + L3 LINE CR1 1523 1575 -2 1137 289 57 26 chr6 51408218 51408712 -137870842 - L2 LINE L2 -1 3312 2804 373 147 59 0 chr6 51408728 51408796 -137870758 + MER5A DNA MER1_type 33 104 -85 208 152 196 0 chr6 51408855 51408901 -137870653 + MER5B DNA MER1_type 1 55 -123 6233 187 28 16 chr6 51408902 51409986 -137869568 + L1PB1 LINE L1 3812 4882 -1269 1549 201 3 10 chr6 51409986 51410280 -137869274 + AluJo SINE Alu 5 296 -16 6233 187 28 16 chr6 51410280 51410357 -137869197 + L1PB1 LINE L1 4882 4957 -1194 2175 122 3 0 chr6 51410357 51410652 -137868902 + AluSx SINE Alu 1 296 -16 6233 187 28 16 chr6 51410652 51411314 -137868240 + L1PB1 LINE L1 4957 5670 -481 210 105 0 0 chr6 51411314 51411352 -137868202 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 6233 187 28 16 chr6 51411352 51411837 -137867717 + L1PB1 LINE L1 5670 6148 -3 395 219 55 39 chr6 51411841 51411969 -137867585 + MER5B DNA MER1_type 49 178 0 256 221 78 0 chr6 51412075 51412152 -137867402 + L2 LINE L2 3137 3219 -53 264 276 67 19 chr6 51412491 51412596 -137866958 - MIR SINE MIR -69 139 30 752 192 105 31 chr6 51412722 51412740 -137866814 - MER69 DNA AcHobo 0 2526 2511 2321 103 7 0 chr6 51412740 51413041 -137866513 + AluSx SINE Alu 1 303 -9 752 192 105 31 chr6 51413041 51413251 -137866303 - MER69 DNA AcHobo -15 2511 2281 1458 245 184 18 chr6 51413254 51413460 -137866094 - MER69 DNA AcHobo -1934 592 422 1829 119 81 44 chr6 51413460 51413820 -137865734 - THE1C LTR MaLR 0 375 3 1458 245 184 18 chr6 51413820 51414119 -137865435 - MER69 DNA AcHobo -2104 422 3 2455 62 0 3 chr6 51414191 51414482 -137865072 - AluSc SINE Alu -19 290 1 1744 187 7 74 chr6 51414504 51414922 -137864632 - MLT1B LTR MaLR 0 390 1 2223 106 3 17 chr6 51415444 51415746 -137863808 + AluSx SINE Alu 1 298 -14 651 259 109 5 chr6 51416415 51416635 -137862919 - MER112 DNA MER1_type -1 259 17 450 266 30 30 chr6 51416701 51416870 -137862684 - MER5A DNA MER1_type -18 171 3 4651 118 17 14 chr6 51417108 51417801 -137861753 + MER4E LTR ERV1 85 779 0 392 302 108 0 chr6 51417890 51418019 -137861535 - MER112 DNA MER1_type -1 259 117 1180 223 138 33 chr6 51418021 51418509 -137861045 - MLT1G1 LTR MaLR -4 587 22 1041 167 0 33 chr6 51418537 51418717 -137860837 + FRAM SINE Alu 1 174 -2 233 167 42 0 chr6 51418943 51418991 -137860563 + CT-rich Low_complexity Low_complexity 1 50 0 376 292 58 12 chr6 51419578 51419782 -137859772 + MIR SINE MIR 19 238 -24 240 241 11 69 chr6 51419808 51419895 -137859659 + MIR SINE MIR 125 206 -56 659 201 20 13 chr6 51420205 51420354 -137859200 + MER5A DNA MER1_type 1 150 -39 1513 180 26 52 chr6 51420556 51420872 -137858682 + MLT1A1 LTR MaLR 1 321 -69 2120 104 4 0 chr6 51420872 51421176 -137858378 + AluSc SINE Alu 2 306 0 1513 180 26 52 chr6 51421176 51421205 -137858349 + MLT1A1 LTR MaLR 321 349 -41 941 222 20 103 chr6 51421336 51421404 -137858150 + L1ME3 LINE L1 5842 5914 -248 1915 138 16 10 chr6 51421404 51421709 -137857845 + AluSx SINE Alu 1 307 -5 941 222 20 103 chr6 51421709 51421791 -137857763 + L1ME3 LINE L1 5914 6001 -161 2084 100 3 24 chr6 51421791 51422104 -137857450 + AluSx SINE Alu 1 307 0 941 222 20 103 chr6 51422104 51422253 -137857301 + L1ME3 LINE L1 6001 6118 -44 * 4758 136 24 36 chr6 51422243 51423108 -137856446 + L1MB7 LINE L1 5330 6184 0 240 200 29 0 chr6 51423102 51423172 -137856382 + L1ME3 LINE L1 6091 6162 0 * 445 292 38 11 chr6 51424044 51424229 -137855325 - LTR67 LTR ERVL 0 557 368 592 205 18 0 chr6 51424414 51424526 -137855028 + MER81 DNA DNA 1 114 0 182 148 37 193 chr6 51424676 51424811 -137854743 - MIR SINE MIR -1 261 148 506 308 43 36 chr6 51424866 51425175 -137854379 - L2 LINE L2 -284 3029 2701 203 292 21 94 chr6 51425175 51425271 -137854283 - MIR SINE MIR -165 97 9 967 192 15 20 chr6 51425351 51425549 -137854005 + MER20 DNA MER1_type 1 197 -22 180 174 65 65 chr6 51426369 51426415 -137853139 - MIR SINE MIR -17 245 200 634 261 84 5 chr6 51426433 51426636 -137852918 - LTR16C LTR ERVL 0 491 273 407 308 41 17 chr6 51426736 51426908 -137852646 - MIR SINE MIR -80 182 7 29 0 0 0 chr6 51426923 51426952 -137852602 + AT_rich Low_complexity Low_complexity 1 29 0 2398 191 30 2 chr6 51426959 51427388 -137852166 - MLT1C LTR MaLR -26 441 1 283 293 33 53 chr6 51427736 51427886 -137851668 + L3 LINE CR1 322 468 -1109 187 308 130 34 chr6 51428387 51428533 -137851021 - MIR3 SINE MIR -15 193 34 * 321 279 68 27 chr6 51428473 51428620 -137850934 - MER5A DNA MER1_type -36 153 1 189 107 0 0 chr6 51428735 51428763 -137850791 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 196 327 0 0 chr6 51428779 51428831 -137850723 - L2 LINE L2 -28 3285 3234 1118 218 67 32 chr6 51428881 51429285 -137850269 + L1MC5 LINE L1 7348 7765 -196 2266 99 0 39 chr6 51430088 51430400 -137849154 + AluSx SINE Alu 1 300 -12 423 211 11 0 chr6 51430492 51430582 -137848972 + L1ME1 LINE L1 6007 6097 -69 1017 234 120 108 chr6 51430846 51431034 -137848520 - L1MC4a LINE L1 -745 5401 5962 2389 75 0 22 chr6 51431034 51431352 -137848202 + AluY SINE Alu 1 311 0 1017 234 120 108 chr6 51431352 51432145 -137847409 - L1MC4a LINE L1 -183 5963 5181 222 329 53 0 chr6 51432898 51432974 -137846580 + L2 LINE L2 3142 3221 -51 1111 270 140 69 chr6 51433296 51434341 -137845213 + L2 LINE L2 1472 2592 -722 528 284 16 0 chr6 51434341 51434468 -137845086 - MER5B DNA MER1_type 0 178 50 618 204 7 36 chr6 51434478 51434615 -137844939 + FLAM_A SINE Alu 10 142 0 194 122 171 0 chr6 51434623 51434664 -137844890 + MER5B DNA MER1_type 131 178 0 * 909 304 77 27 chr6 51434664 51435345 -137844209 + L2 LINE L2 2578 3300 -13 21 57 0 0 chr6 51435762 51435797 -137843757 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr6 51438255 51438285 -137841269 + AT_rich Low_complexity Low_complexity 1 30 0 180 152 0 0 chr6 51439824 51439857 -137839697 + CT-rich Low_complexity Low_complexity 1 33 0 460 311 17 44 chr6 51441272 51441452 -137838102 - MIR3 SINE MIR -22 186 12 261 314 116 23 chr6 51441647 51441819 -137837735 - MIR SINE MIR 0 262 75 201 285 134 29 chr6 51442383 51442494 -137837060 - L2 LINE L2 -67 3246 3109 1568 179 8 0 chr6 51442494 51442745 -137836809 + AluJb SINE Alu 1 253 -59 201 285 134 29 chr6 51442745 51442805 -137836749 - L2 LINE L2 -204 3109 3057 601 272 37 43 chr6 51442952 51443275 -137836279 - L2 LINE L2 -469 2845 2525 1171 141 57 6 chr6 51443382 51443559 -137835995 - AluJb SINE Alu -126 186 1 21 0 0 0 chr6 51444050 51444071 -137835483 + AT_rich Low_complexity Low_complexity 1 21 0 777 199 24 18 chr6 51444182 51444348 -137835206 - FRAM SINE Alu -10 166 1 293 242 0 16 chr6 51444352 51444414 -137835140 + MLT1J2 LTR MaLR 72 132 -318 2329 106 0 0 chr6 51444454 51444757 -137834797 + AluSx SINE Alu 1 303 -9 374 281 151 26 chr6 51444786 51444978 -137834576 + MLT1J LTR MaLR 275 490 -21 23 0 0 0 chr6 51445828 51445851 -137833703 + AT_rich Low_complexity Low_complexity 1 23 0 676 198 0 0 chr6 51445862 51445978 -137833576 - FLAM_A SINE Alu -16 117 2 253 136 0 198 chr6 51446293 51446374 -137833180 + L2 LINE L2 3230 3294 -19 24 0 0 29 chr6 51448088 51448104 -137831450 + AT_rich Low_complexity Low_complexity 1 16 -18 2190 71 28 18 chr6 51448104 51448387 -137831167 - AluSc SINE Alu -23 286 1 24 0 0 29 chr6 51448387 51448405 -137831149 + AT_rich Low_complexity Low_complexity 16 34 0 2446 83 7 0 chr6 51448941 51449241 -137830313 + AluSx SINE Alu 1 302 -10 1777 163 17 13 chr6 51449344 51449645 -137829909 + AluSg SINE Alu 1 302 -8 745 239 23 17 chr6 51449668 51449779 -137829775 + MLT1E LTR MaLR 413 527 -66 2389 68 3 16 chr6 51449779 51450087 -137829467 - AluY SINE Alu -7 304 1 745 239 23 17 chr6 51450087 51450151 -137829403 + MLT1E LTR MaLR 527 589 -4 340 283 82 13 chr6 51451878 51452037 -137827517 - MIR3 SINE MIR -7 201 32 455 251 101 61 chr6 51452827 51453173 -137826381 - L1ME LINE L1 -297 5824 5465 2112 116 10 3 chr6 51453252 51453544 -137826010 - AluSx SINE Alu -18 294 1 213 121 0 0 chr6 51455274 51455307 -137824247 + (CCA)n Simple_repeat Simple_repeat 3 35 0 2566 50 0 3 chr6 51456718 51457017 -137822537 - AluY SINE Alu -13 298 1 708 183 0 8 chr6 51457937 51458057 -137821497 - FLAM_A SINE Alu -14 119 1 23 54 0 0 chr6 51460262 51460299 -137819255 + AT_rich Low_complexity Low_complexity 1 37 0 843 209 26 67 chr6 51460731 51460999 -137818555 + L1ME1 LINE L1 5905 6161 -5 796 232 17 51 chr6 51461807 51461966 -137817588 + MER112 DNA MER1_type 1 151 -109 832 148 0 22 chr6 51461966 51462101 -137817453 - FLAM_C SINE Alu 0 133 2 796 232 17 51 chr6 51462101 51462178 -137817376 + MER112 DNA MER1_type 151 229 -31 195 182 0 0 chr6 51462291 51462324 -137817230 - MIR SINE MIR -27 235 203 812 214 13 0 chr6 51462879 51463038 -137816516 + FRAM SINE Alu 4 164 -2 22 0 0 0 chr6 51464654 51464676 -137814878 + GC_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr6 51464980 51465011 -137814543 + GC_rich Low_complexity Low_complexity 1 31 0 186 133 0 0 chr6 51465217 51465247 -137814307 + (CCG)n Simple_repeat Simple_repeat 2 31 0 398 295 9 0 chr6 51468267 51468379 -137811175 + MER117 DNA MER1_type 2 114 -83 1778 152 0 31 chr6 51471806 51472095 -137807459 + AluJb SINE Alu 16 295 -17 255 176 98 0 chr6 51472785 51472836 -137806718 - Tigger5 DNA MER2_type 0 2323 2268 469 203 0 0 chr6 51472852 51472931 -137806623 - Tigger5 DNA MER2_type -2244 79 1 198 0 0 0 chr6 51474668 51474690 -137804864 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr6 51477046 51477068 -137802486 + (A)n Simple_repeat Simple_repeat 1 22 0 591 276 26 7 chr6 51477210 51477362 -137802192 + MER5B DNA MER1_type 10 164 -14 354 23 0 0 chr6 51479782 51479825 -137799729 + (TG)n Simple_repeat Simple_repeat 1 43 0 237 33 0 0 chr6 51479916 51479946 -137799608 + (TG)n Simple_repeat Simple_repeat 1 30 0 333 0 0 0 chr6 51480036 51480073 -137799481 + (TG)n Simple_repeat Simple_repeat 1 37 0 401 248 128 0 chr6 51481463 51481596 -137797958 - L2 LINE L2 0 3313 3164 276 241 120 19 chr6 51481654 51481762 -137797792 + MIR SINE MIR 32 150 -112 1795 168 3 23 chr6 51481806 51482110 -137797444 + AluJb SINE Alu 3 300 -12 655 280 101 0 chr6 51482239 51482428 -137797126 + MER63A DNA MER1_type 1 208 -2 369 255 43 0 chr6 51483055 51483149 -137796405 + MIR SINE MIR 68 165 -97 202 295 126 0 chr6 51483635 51483730 -137795824 - MIR3 SINE MIR -7 201 95 184 261 43 29 chr6 51485727 51485796 -137793758 - MIR SINE MIR -187 75 6 1067 273 90 25 chr6 51485815 51486388 -137793166 - L2 LINE L2 -1 3312 2712 599 132 85 0 chr6 51486829 51486935 -137792619 - MER94 DNA DNA -19 115 1 2137 95 21 0 chr6 51486969 51487252 -137792302 - AluSc SINE Alu -20 289 1 201 374 12 0 chr6 51487428 51487511 -137792043 - L2 LINE L2 0 3272 3189 366 340 25 13 chr6 51487534 51487693 -137791861 - MIR SINE MIR -21 241 81 398 272 52 29 chr6 51487974 51488110 -137791444 + MIR3 SINE MIR 30 168 -40 342 274 67 24 chr6 51488613 51488777 -137790777 - MIR SINE MIR -89 173 3 720 253 21 0 chr6 51488800 51488990 -137790564 - MIR SINE MIR -6 256 63 239 237 92 13 chr6 51491757 51491833 -137787721 - MIR SINE MIR -107 101 20 249 350 10 10 chr6 51491852 51491952 -137787602 - MIR SINE MIR -161 101 2 183 150 150 0 chr6 51492067 51492107 -137787447 + MER5B DNA MER1_type 8 53 -125 229 273 23 45 chr6 51492224 51492312 -137787242 - L2 LINE L2 -1 3271 3186 206 279 19 39 chr6 51492592 51492696 -137786858 - MER5B DNA MER1_type -36 142 41 262 304 13 0 chr6 51492710 51492789 -137786765 - MER5B DNA MER1_type -10 168 89 2151 108 11 3 chr6 51493320 51493607 -137785947 - AluSg SINE Alu -21 289 1 2389 90 3 0 chr6 51496231 51496531 -137783023 - AluSq SINE Alu -12 301 1 188 302 48 32 chr6 51497218 51497281 -137782273 + L3 LINE CR1 1375 1438 -139 472 321 98 23 chr6 51497917 51498132 -137781422 - MIR SINE MIR -12 250 20 443 241 86 0 chr6 51498148 51498264 -137781290 - L2 LINE L2 0 3313 3188 244 244 24 24 chr6 51498426 51498508 -137781046 + MIR3 SINE MIR 95 176 -32 * 562 230 178 7 chr6 51498492 51498644 -137780910 + MER5A DNA MER1_type 6 183 -6 545 257 36 7 chr6 51500217 51500357 -137779197 + MIR SINE MIR 119 262 0 226 250 0 21 chr6 51500957 51501005 -137778549 + L2 LINE L2 3219 3265 -7 302 236 112 108 chr6 51501686 51501838 -137777716 - L1ME4a LINE L1 -11 6110 5955 1269 180 102 3 chr6 51501838 51502133 -137777421 + MER33 DNA MER1_type 1 324 0 302 236 112 108 chr6 51502133 51502238 -137777316 - L1ME4a LINE L1 -166 5955 5852 2557 162 13 9 chr6 51502353 51502803 -137776751 + MER66A LTR ERV1 27 478 0 202 338 25 12 chr6 51502810 51502890 -137776664 - MIR3 SINE MIR -115 93 13 251 240 0 0 chr6 51503686 51503736 -137775818 + MER91B DNA MER1_type 81 130 -60 269 241 203 0 chr6 51503755 51503834 -137775720 + MER91B DNA MER1_type 93 187 -3 2108 125 3 7 chr6 51505452 51505748 -137773806 - AluSq SINE Alu -18 295 1 222 261 0 0 chr6 51506212 51506258 -137773296 + C-rich Low_complexity Low_complexity 2 47 0 351 282 0 0 chr6 51507986 51508057 -137771497 + L2 LINE L2 3228 3298 -15 202 258 76 0 chr6 51508137 51508203 -137771351 + MIR SINE MIR 182 252 -10 1742 102 4 4 chr6 51508361 51508596 -137770958 - AluSg/x SINE Alu -2 308 74 368 323 81 0 chr6 51508614 51508738 -137770816 - L2 LINE L2 -2 3270 3137 380 216 34 0 chr6 51509317 51509405 -137770149 - MIR3 SINE MIR -9 199 109 221 184 40 53 chr6 51510839 51510915 -137768639 + (TCTCTG)n Simple_repeat Simple_repeat 4 78 0 272 220 0 0 chr6 51511087 51511137 -137768417 - L2 LINE L2 -3 3310 3261 22 0 0 0 chr6 51511281 51511303 -137768251 + AT_rich Low_complexity Low_complexity 1 22 0 1380 185 84 3 chr6 51512517 51512874 -137766680 - MER3 DNA MER1_type 0 2619 2234 595 169 51 8 chr6 51512877 51512995 -137766559 - MER3 DNA MER1_type -41 168 46 347 286 45 27 chr6 51513048 51513160 -137766394 - L2 LINE L2 0 3272 3159 668 288 22 113 chr6 51513345 51513638 -137765916 - LTR67 LTR ERVL -11 546 334 2405 76 0 10 chr6 51513638 51513940 -137765614 - AluY SINE Alu -12 299 1 668 288 22 113 chr6 51513940 51514246 -137765308 - LTR67 LTR ERVL -223 334 2 1272 178 7 58 chr6 51514361 51514637 -137764917 + MLT1A1 LTR MaLR 1 262 -103 252 290 28 19 chr6 51514864 51514971 -137764583 + LTR67 LTR ERVL 93 200 -357 456 283 61 24 chr6 51516447 51516629 -137762925 + MIR SINE MIR 2 187 -59 1970 168 8 32 chr6 51516938 51517308 -137762246 + MLT1A1 LTR MaLR 1 361 -4 1068 211 127 27 chr6 51517579 51517878 -137761676 - MLT1F LTR MaLR 0 542 214 245 227 9 55 chr6 51518156 51518240 -137761314 - MIR SINE MIR -70 192 115 720 231 34 66 chr6 51518269 51518484 -137761070 + MIR SINE MIR 31 247 -15 213 254 0 0 chr6 51518891 51518962 -137760592 + (CA)n Simple_repeat Simple_repeat 1 71 0 464 237 49 138 chr6 51519510 51519958 -137759596 + MLT1J LTR MaLR 22 465 -21 330 263 88 0 chr6 51519966 51520046 -137759508 + MIR SINE MIR 176 262 0 651 256 47 25 chr6 51520792 51521066 -137758488 - L1MD3 LINE L1 -13 7982 6083 521 283 35 17 chr6 51521114 51521287 -137758267 + MIR SINE MIR 5 180 -82 5952 40 6 0 chr6 51521814 51522515 -137757039 - L1PA5 LINE L1 0 6154 5450 199 314 0 0 chr6 51522560 51522611 -137756943 + L2 LINE L2 3136 3186 -86 191 346 74 0 chr6 51522736 51522817 -137756737 - MIR SINE MIR -74 188 102 931 188 12 0 chr6 51523292 51523457 -137756097 - FRAM SINE Alu -10 166 1 658 241 46 62 chr6 51523471 51523666 -137755888 - MIR SINE MIR -56 206 15 986 258 54 23 chr6 51523864 51524217 -137755337 - L1MD3 LINE L1 -1906 5902 5539 641 341 48 20 chr6 51524555 51524767 -137754787 - MIR SINE MIR 0 262 40 2073 112 63 0 chr6 51524767 51525053 -137754501 - AluSq SINE Alu -9 304 1 641 341 48 20 chr6 51525053 51525092 -137754462 - MIR SINE MIR -222 40 4 279 161 0 0 chr6 51525428 51525484 -137754070 + (TATG)n Simple_repeat Simple_repeat 4 59 0 2306 106 42 33 chr6 51525550 51525909 -137753645 + THE1B LTR MaLR 1 362 -2 198 333 0 0 chr6 51526362 51526419 -137753135 + L2 LINE L2 3204 3260 -12 483 294 135 20 chr6 51526915 51527160 -137752394 + L2 LINE L2 2003 2275 -1039 400 58 0 0 chr6 51527273 51527325 -137752229 - MLT2B1 LTR ERVL 0 520 469 454 200 12 0 chr6 51527326 51527411 -137752143 - Tigger5 DNA MER2_type 0 2323 2238 239 150 0 0 chr6 51527425 51527465 -137752089 - Tigger5 DNA MER2_type -2271 52 13 407 153 14 14 chr6 51527465 51527537 -137752017 - Tigger5 DNA MER2_type 0 2323 2252 285 222 0 0 chr6 51527508 51527562 -137751992 - Tigger5 DNA MER2_type -2269 54 1 * 2259 231 28 16 chr6 51527570 51528072 -137751482 - MLT2B3 LTR ERVL -46 508 1 394 245 126 42 chr6 51528087 51528230 -137751324 + L2 LINE L2 3158 3312 -1 321 216 336 9 chr6 51528293 51528409 -137751145 - MIR SINE MIR -4 258 105 908 179 75 171 chr6 51528825 51529239 -137750315 + MLT1A2 LTR MaLR 1 374 0 510 236 9 0 chr6 51529239 51529344 -137750210 + MER81 DNA DNA 9 114 0 188 300 0 29 chr6 51529651 51529721 -137749833 + MIR SINE MIR 38 105 -103 211 318 55 36 chr6 51530053 51530163 -137749391 + MIR SINE MIR 134 245 -17 472 226 61 26 chr6 51530746 51530861 -137748693 - MER5B DNA MER1_type 0 178 60 591 31 10 42 chr6 51530964 51531060 -137748494 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 1931 103 0 132 chr6 51531074 51531422 -137748132 - AluSp SINE Alu 0 303 2 1687 274 137 22 chr6 51531422 51531731 -137747823 - L1MC4 LINE L1 -131 7911 7639 2096 113 22 19 chr6 51531731 51532042 -137747512 - AluSx SINE Alu 0 312 1 1687 274 137 22 chr6 51532042 51533346 -137746208 - L1MC4 LINE L1 -403 7639 5981 2538 67 0 0 chr6 51533739 51534037 -137745517 + AluSg SINE Alu 2 299 -11 342 374 35 20 chr6 51534536 51534739 -137744815 + L3 LINE CR1 29 234 -1343 425 280 117 27 chr6 51534989 51535289 -137744265 - LTR16C LTR ERVL 0 491 165 396 337 25 25 chr6 51535583 51535782 -137743772 + LTR67 LTR ERVL 4 202 -355 1140 285 125 15 chr6 51535929 51536392 -137743162 + L3 LINE CR1 369 882 -695 30 27 0 0 chr6 51537024 51537061 -137742493 + AT_rich Low_complexity Low_complexity 1 37 0 476 219 0 24 chr6 51537104 51537227 -137742327 - MER106B DNA MER1_type -913 146 27 237 119 0 0 chr6 51538732 51538774 -137740780 + (T)n Simple_repeat Simple_repeat 1 42 0 198 176 0 0 chr6 51538825 51538876 -137740678 + T-rich Low_complexity Low_complexity 1 51 0 1001 272 79 3 chr6 51539175 51539473 -137740081 - MLT1I LTR MaLR 0 409 98 237 65 0 0 chr6 51539864 51539895 -137739659 + (T)n Simple_repeat Simple_repeat 1 31 0 29 0 0 0 chr6 51540119 51540148 -137739406 + AT_rich Low_complexity Low_complexity 1 29 0 295 286 160 8 chr6 51541265 51541384 -137738170 - L2 LINE L2 -5 3308 3172 1085 221 187 77 chr6 51541651 51541928 -137737626 - MLT1G LTR MaLR -2 588 343 1852 132 52 14 chr6 51541928 51542215 -137737339 - AluSx SINE Alu -14 298 1 1085 221 187 77 chr6 51542215 51542394 -137737160 - MLT1G LTR MaLR -247 343 185 2349 109 3 0 chr6 51542394 51542698 -137736856 + AluSp SINE Alu 9 313 0 1085 221 187 77 chr6 51542698 51542770 -137736784 - MLT1G LTR MaLR -405 185 1 400 314 45 6 chr6 51542776 51542932 -137736622 + MIR3 SINE MIR 19 180 -28 385 317 25 68 chr6 51543055 51543200 -137736354 - MIR3 SINE MIR -16 192 53 2100 98 0 43 chr6 51543200 51543505 -137736049 + AluSg1 SINE Alu 1 292 -17 385 317 25 68 chr6 51543505 51543520 -137736034 - MIR3 SINE MIR -155 53 39 219 341 40 40 chr6 51545388 51545611 -137733943 - L2 LINE L2 -246 3026 2804 1091 211 140 0 chr6 51546292 51546557 -137732997 + LTR40b LTR ERVL 161 462 0 1047 215 144 89 chr6 51546616 51547053 -137732501 - MLT1L LTR MaLR -6 609 149 1047 175 16 6 chr6 51547056 51547239 -137732315 - MER5A DNA MER1_type -2 187 3 214 254 56 28 chr6 51547254 51547284 -137732270 + MER5B DNA MER1_type 27 55 -123 369 62 0 0 chr6 51547284 51547332 -137732222 + (TG)n Simple_repeat Simple_repeat 1 48 0 214 254 56 28 chr6 51547332 51547372 -137732182 + MER5B DNA MER1_type 55 99 -79 245 326 65 50 chr6 51547427 51547764 -137731790 - L2 LINE L2 -702 2612 2271 247 339 0 85 chr6 51547800 51548024 -137731530 + L2 LINE L2 2553 2757 -557 619 208 16 77 chr6 51548038 51548221 -137731333 - MER5B DNA MER1_type -6 172 1 371 338 25 20 chr6 51548334 51548532 -137731022 + L2 LINE L2 2894 3092 -180 389 261 92 60 chr6 51548592 51548810 -137730744 + MIR SINE MIR 26 250 -12 1187 207 65 19 chr6 51548847 51549156 -137730398 - MER33 DNA MER1_type 0 324 2 425 258 50 25 chr6 51549687 51549807 -137729747 + MIR SINE MIR 61 183 -79 1361 206 106 110 chr6 51549824 51550398 -137729156 + MLT1E LTR MaLR 22 593 0 236 355 18 0 chr6 51551442 51551552 -137728002 + CT-rich Low_complexity Low_complexity 3 114 0 567 246 167 5 chr6 51551596 51551811 -137727743 + MIR SINE MIR 8 257 -5 181 243 214 0 chr6 51551813 51551916 -137727638 - L2 LINE L2 -11 3261 3137 27 62 0 0 chr6 51552628 51552676 -137726878 + AT_rich Low_complexity Low_complexity 1 48 0 209 318 56 19 chr6 51552893 51553000 -137726554 - L2 LINE L2 -50 3222 3112 2235 143 44 29 chr6 51553235 51553690 -137725864 - L1MB7 LINE L1 0 6184 5723 1659 40 0 0 chr6 51554645 51554844 -137724710 + L1PA5 LINE L1 5956 6154 0 211 296 148 42 chr6 51555771 51555913 -137723641 - MIR SINE MIR 0 262 106 276 241 213 60 chr6 51555994 51556205 -137723349 - L1ME4a LINE L1 0 6121 5944 2228 122 0 0 chr6 51556205 51556499 -137723055 - AluSx SINE Alu -18 294 1 276 241 213 60 chr6 51556499 51556606 -137722948 - L1ME4a LINE L1 -177 5944 5754 1681 115 50 112 chr6 51556609 51556992 -137722562 - L1MA4 LINE L1 0 6300 5942 264 236 106 41 chr6 51557204 51557327 -137722227 - L1ME4a LINE L1 -611 5510 5380 * 4766 171 11 10 chr6 51557324 51558229 -137721325 + L1 LINE L1 4051 4956 -1190 20099 179 24 11 chr6 51558247 51564946 -137714608 + L1PA13 LINE L1 1 6808 -6 6089 113 9 0 chr6 51565013 51566172 -137713382 + L1PA16 LINE L1 4985 6165 -1 320 322 8 0 chr6 51566426 51566547 -137713007 + MER117 DNA MER1_type 3 124 -73 228 114 0 0 chr6 51566547 51566582 -137712972 - L1ME4a LINE L1 -800 5380 5346 1636 209 30 10 chr6 51566600 51567006 -137712548 - L1ME4a LINE L1 -943 5203 4790 405 274 174 61 chr6 51567160 51567521 -137712033 - MLT1L LTR MaLR -8 607 206 624 272 40 26 chr6 51568314 51568542 -137711012 - MIR SINE MIR -1 261 31 192 216 0 0 chr6 51568671 51568708 -137710846 + MIR SINE MIR 108 144 -118 748 222 6 6 chr6 51569369 51569540 -137710014 + MIR SINE MIR 86 256 -6 606 298 130 50 chr6 51570094 51570578 -137708976 - Charlie8 DNA MER1_type -1894 523 1 385 333 48 11 chr6 51570880 51571069 -137708485 + MIR SINE MIR 49 244 -18 354 328 15 15 chr6 51571167 51571301 -137708253 - L2 LINE L2 -5 3267 3134 340 79 0 53 chr6 51571433 51571509 -137708045 + (TAAA)n Simple_repeat Simple_repeat 3 74 0 312 219 82 0 chr6 51571509 51571582 -137707972 + L1MC4 LINE L1 6611 6689 -1353 297 0 0 0 chr6 51571582 51571615 -137707939 + (CA)n Simple_repeat Simple_repeat 2 34 0 499 298 55 5 chr6 51571671 51571889 -137707665 - L2 LINE L2 -915 2399 2171 224 167 0 21 chr6 51572746 51572794 -137706760 + L2 LINE L2 3265 3311 -2 212 171 0 24 chr6 51573262 51573303 -137706251 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 881 270 209 12 chr6 51573355 51573781 -137705773 + L2 LINE L2 2804 3313 0 792 259 77 12 chr6 51574174 51574433 -137705121 + LTR16C LTR ERVL 216 491 0 352 285 67 22 chr6 51574600 51574779 -137704775 + MIR3 SINE MIR 4 190 -18 208 312 32 0 chr6 51575933 51576026 -137703528 - MIR3 SINE MIR -2 206 111 676 237 52 11 chr6 51576040 51576240 -137703314 - MIR SINE MIR -12 250 45 426 249 186 11 chr6 51576759 51576936 -137702618 + MIR SINE MIR 12 219 -43 290 183 127 0 chr6 51577718 51577789 -137701765 - MIR SINE MIR -120 142 63 773 232 59 41 chr6 51577832 51578052 -137701502 - MER58A DNA MER1_type 0 224 1 835 237 30 25 chr6 51578125 51578361 -137701193 + MIR SINE MIR 15 251 -11 222 235 20 0 chr6 51578635 51578686 -137700868 + MIR SINE MIR 85 136 -72 23 0 0 0 chr6 51578687 51578710 -137700844 + AT_rich Low_complexity Low_complexity 1 23 0 350 222 48 40 chr6 51578733 51578859 -137700695 + MIR SINE MIR 122 248 -14 392 171 53 0 chr6 51579104 51579180 -137700374 + MER116 DNA Mariner 1 80 0 252 282 97 32 chr6 51579183 51579307 -137700247 - MIR SINE MIR -105 157 26 1465 261 100 3 chr6 51580542 51580922 -137698632 + LTR16C LTR ERVL 75 491 0 1424 271 135 7 chr6 51581473 51582276 -137697278 + L2 LINE L2 2256 3171 -142 210 250 0 0 chr6 51582366 51582406 -137697148 + MIR SINE MIR 85 124 -84 436 299 86 25 chr6 51583250 51583494 -137696060 + L2 LINE L2 2607 2865 -449 246 325 70 9 chr6 51583579 51583693 -137695861 + L2 LINE L2 3139 3259 -13 531 0 0 0 chr6 51584115 51584174 -137695380 + (TC)n Simple_repeat Simple_repeat 2 60 0 216 0 0 0 chr6 51584173 51584197 -137695357 + (TG)n Simple_repeat Simple_repeat 1 24 0 * 2508 70 0 16 chr6 51585133 51585449 -137694105 - AluY SINE Alu 0 311 1 2344 72 34 3 chr6 51585798 51586090 -137693464 + AluY SINE Alu 1 301 -10 1481 183 98 0 chr6 51587214 51587488 -137692066 - AluJo SINE Alu -9 303 3 198 266 164 39 chr6 51587490 51587618 -137691936 - MIR3 SINE MIR -62 146 3 292 229 29 0 chr6 51587690 51587760 -137691794 - MIR3 SINE MIR -11 197 126 368 36 18 18 chr6 51587899 51587954 -137691600 - MLT2A1 LTR ERVL -1 452 398 219 80 80 0 chr6 51587955 51588005 -137691549 + (TA)n Simple_repeat Simple_repeat 1 54 0 2973 82 20 10 chr6 51588005 51588406 -137691148 - MLT2A1 LTR ERVL -39 405 1 207 275 150 12 chr6 51588606 51588686 -137690868 - MIR3 SINE MIR -10 198 108 654 247 6 0 chr6 51588840 51589002 -137690552 - MER103 DNA DNA -2 164 2 362 250 12 0 chr6 51589576 51589660 -137689894 - L2 LINE L2 0 3272 3188 2340 97 10 6 chr6 51590017 51590328 -137689226 - AluSx SINE Alu 0 312 1 237 352 70 31 chr6 51591296 51591424 -137688130 + MIR3 SINE MIR 3 135 -73 2452 78 3 0 chr6 51591464 51591760 -137687794 - AluY SINE Alu -14 297 1 1843 176 0 26 chr6 51591790 51592103 -137687451 + AluJo SINE Alu 1 305 -7 330 315 66 13 chr6 51594674 51594827 -137684727 + MIR SINE MIR 42 202 -60 21 57 0 0 chr6 51596291 51596326 -137683228 + AT_rich Low_complexity Low_complexity 1 35 0 572 235 190 14 chr6 51597177 51597398 -137682156 + MIR SINE MIR 2 261 -1 312 148 93 0 chr6 51598404 51598458 -137681096 - FLAM_A SINE Alu -10 123 65 2584 4 0 4 chr6 51599004 51599280 -137680274 + AluYa5 SINE Alu 25 299 -12 414 262 27 75 chr6 51600057 51600118 -137679436 + MIR SINE MIR 85 147 -115 2087 133 0 0 chr6 51600118 51600412 -137679142 + AluSx SINE Alu 1 294 -18 414 262 27 75 chr6 51600412 51600537 -137679017 + MIR SINE MIR 147 262 0 387 348 76 36 chr6 51600562 51600838 -137678716 - L2 LINE L2 -10 3262 2976 213 329 168 0 chr6 51600880 51601035 -137678519 - L3 LINE CR1 -87 1490 1310 2294 110 0 7 chr6 51601381 51601691 -137677863 + AluY SINE Alu 1 308 -3 222 37 0 0 chr6 51601700 51601727 -137677827 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 248 301 84 12 chr6 51601838 51601921 -137677633 - MER91C DNA MER1_type -21 119 31 2340 113 0 0 chr6 51602833 51603142 -137676412 - AluSg SINE Alu 0 310 2 329 74 0 19 chr6 51603148 51603202 -137676352 + (TTTTA)n Simple_repeat Simple_repeat 1 53 0 3055 33 3 19 chr6 51603202 51603570 -137675984 - L1PA3 LINE L1 -24 6131 5770 243 79 0 0 chr6 51603570 51603608 -137675946 + (T)n Simple_repeat Simple_repeat 1 38 0 14558 25 2 1 chr6 51603610 51606058 -137673496 - L1PA2 LINE L1 -2 6153 3702 2192 121 0 0 chr6 51606082 51606372 -137673182 - AluSx SINE Alu -21 291 2 196 283 166 28 chr6 51606828 51606973 -137672581 + MIR SINE MIR 37 201 -61 494 333 134 16 chr6 51608346 51608854 -137670700 - L1ME4a LINE L1 -227 5894 5327 237 319 14 0 chr6 51610607 51610676 -137668878 + Charlie4 DNA MER1_type 1892 1961 0 3328 231 73 27 chr6 51610741 51611985 -137667569 - L2 LINE L2 0 3313 1956 204 328 126 17 chr6 51615284 51615403 -137664151 - L3b LINE CR1 -95 1488 1357 450 279 78 0 chr6 51616444 51616598 -137662956 - MIR SINE MIR -74 188 23 323 260 60 7 chr6 51616755 51616905 -137662649 + CT-rich Low_complexity Low_complexity 3 160 0 511 281 7 0 chr6 51616921 51617056 -137662498 + MIR SINE MIR 3 138 -124 224 194 299 0 chr6 51617152 51617219 -137662335 + MIR SINE MIR 176 262 0 13368 193 26 29 chr6 51617536 51621668 -137657886 - L1MB7 LINE L1 -41 6641 2563 764 119 6 94 chr6 51621734 51621844 -137657710 - L1MB7 LINE L1 -6381 161 68 2453 101 0 0 chr6 51621844 51622150 -137657404 - AluSx SINE Alu -6 306 1 764 119 6 94 chr6 51622150 51622198 -137657356 - L1MB7 LINE L1 -6474 68 17 571 236 84 22 chr6 51622324 51622502 -137657052 - L1ME1 LINE L1 -5 6161 5973 263 254 0 0 chr6 51622684 51622743 -137656811 - L1M4 LINE L1 -3130 3016 2958 1711 116 56 0 chr6 51623300 51623567 -137655987 + MER2 DNA MER2_type 5 286 -59 241 255 69 29 chr6 51624472 51624574 -137654980 + MIR3 SINE MIR 97 202 -6 2137 129 7 0 chr6 51627635 51627930 -137651624 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr6 51628121 51628142 -137651412 + AT_rich Low_complexity Low_complexity 1 21 0 1055 211 60 53 chr6 51629815 51630233 -137649321 - HAL1 LINE L1 -1095 1412 992 241 226 122 96 chr6 51630233 51630348 -137649206 + LTR40a LTR ERVL 1 118 -401 279 0 0 0 chr6 51630420 51630451 -137649103 + (TC)n Simple_repeat Simple_repeat 2 32 0 411 307 39 8 chr6 51630479 51630606 -137648948 + LTR40a LTR ERVL 232 362 -157 544 139 119 10 chr6 51630907 51631008 -137648546 + MER81 DNA DNA 3 114 0 418 303 22 79 chr6 51631245 51631308 -137648246 - MIR SINE MIR -6 256 191 2013 131 13 29 chr6 51631308 51631620 -137647934 - AluSx SINE Alu -5 307 1 418 303 22 79 chr6 51631620 51631811 -137647743 - MIR SINE MIR -71 191 24 709 286 53 56 chr6 51632565 51632942 -137646612 + L2 LINE L2 2938 3313 0 305 293 68 41 chr6 51632944 51633091 -137646463 + MIR3 SINE MIR 7 157 -51 347 242 63 0 chr6 51634268 51634363 -137645191 + MIR SINE MIR 38 138 -70 189 271 21 0 chr6 51635045 51635093 -137644461 + MIR SINE MIR 97 145 -63 288 208 8 29 chr6 51635729 51635824 -137643730 - MIR SINE MIR -58 150 92 610 249 160 0 chr6 51636005 51636174 -137643380 - MER91A DNA MER1_type 0 196 1 239 184 0 0 chr6 51636720 51636769 -137642785 - L2 LINE L2 -72 3241 3193 202 330 0 43 chr6 51636812 51636906 -137642648 + MIR SINE MIR 32 121 -87 203 204 61 0 chr6 51638630 51638679 -137640875 + MIR SINE MIR 3 54 -208 195 250 33 54 chr6 51639322 51639414 -137640140 - L2 LINE L2 0 3272 3183 3281 222 67 44 chr6 51639530 51640500 -137639054 - L1ME1 LINE L1 -5 6161 5131 2511 83 0 6 chr6 51640500 51640813 -137638741 - AluSq SINE Alu -2 311 1 3281 222 67 44 chr6 51640813 51641581 -137637973 - L1ME1 LINE L1 -1035 5131 4382 403 290 23 8 chr6 51643257 51643388 -137636166 + MIR SINE MIR 3 135 -127 252 0 0 0 chr6 51643422 51643450 -137636104 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 2171 210 137 75 chr6 51643694 51644034 -137635520 - L1MC5 LINE L1 -36 7925 7607 2252 90 3 13 chr6 51644034 51644344 -137635210 - AluSx SINE Alu -1 311 5 2171 210 137 75 chr6 51644344 51644968 -137634586 - L1MC5 LINE L1 -354 7607 6892 1842 172 0 23 chr6 51644968 51645270 -137634284 - AluJb SINE Alu -17 295 1 2171 210 137 75 chr6 51645270 51645330 -137634224 - L1MC5 LINE L1 -1069 6892 6837 356 287 11 0 chr6 51645330 51645417 -137634137 - MER21B LTR ERV1 -469 394 307 1491 183 0 8 chr6 51645419 51645660 -137633894 - AluJb SINE Alu -73 239 1 984 264 117 22 chr6 51645786 51646240 -137633314 + LTR33 LTR ERVL 1 497 -24 239 211 193 0 chr6 51646324 51646381 -137633173 - L2 LINE L2 0 3313 3246 1448 255 37 75 chr6 51646756 51647379 -137632175 - LTR9 LTR ERV1 0 612 14 6173 44 0 17 chr6 51647388 51648061 -137631493 - L1PA5 LINE L1 -1 6153 5493 2219 65 41 0 chr6 51648061 51648231 -137631323 - AluY SINE Alu -6 305 117 189 0 0 0 chr6 51648231 51648252 -137631302 + (TG)n Simple_repeat Simple_repeat 2 22 0 2219 65 41 0 chr6 51648252 51648373 -137631181 - AluY SINE Alu -194 117 2 6173 44 0 17 chr6 51648373 51648455 -137631099 - L1PA5 LINE L1 -661 5493 5411 2071 55 0 4 chr6 51648455 51648730 -137630824 + L1PA5 LINE L1 5122 5395 -751 1798 88 25 67 chr6 51649237 51649520 -137630034 - AluSg SINE Alu -11 299 29 2194 179 31 3 chr6 51649633 51650025 -137629529 - MER57A LTR ERV1 0 403 1 368 149 0 45 chr6 51650159 51650226 -137629328 - MIR SINE MIR -7 255 192 644 243 69 42 chr6 51650303 51650492 -137629062 - MIR SINE MIR -62 200 7 274 250 23 34 chr6 51650513 51650601 -137628953 - L1ME4a LINE L1 -89 6032 5946 180 77 0 0 chr6 51650608 51650634 -137628920 + (CA)n Simple_repeat Simple_repeat 1 26 0 322 347 30 0 chr6 51650655 51650822 -137628732 - L1MC4a LINE L1 -1926 5882 5711 203 229 0 0 chr6 51651434 51651469 -137628085 + (CG)n Simple_repeat Simple_repeat 1 35 0 1273 232 147 15 chr6 51651724 51652120 -137627434 + MLT1J2 LTR MaLR 3 450 0 225 0 0 0 chr6 51653155 51653180 -137626374 + (TG)n Simple_repeat Simple_repeat 2 26 0 29 28 0 0 chr6 51653180 51653216 -137626338 + AT_rich Low_complexity Low_complexity 1 36 0 987 268 73 43 chr6 51653357 51653565 -137625989 - L1MC4a LINE L1 -828 5318 5118 1669 165 0 0 chr6 51653565 51653831 -137625723 - AluSx SINE Alu -43 269 4 987 268 73 43 chr6 51653831 51654248 -137625306 - L1MC4a LINE L1 -1028 5118 4674 480 18 0 0 chr6 51654923 51654980 -137624574 + (CA)n Simple_repeat Simple_repeat 2 58 0 502 241 202 25 chr6 51654984 51655187 -137624367 + MIR SINE MIR 18 256 -6 189 149 0 106 chr6 51655153 51655200 -137624354 + L2 LINE L2 3268 3309 -4 * 245 296 14 0 chr6 51655195 51655266 -137624288 + L2 LINE L2 3193 3264 -8 1920 115 21 0 chr6 51655296 51655584 -137623970 + AluSx SINE Alu 1 294 -18 340 327 58 26 chr6 51656335 51656491 -137623063 + L3 LINE CR1 1415 1575 -2 698 251 43 0 chr6 51657430 51657593 -137621961 + MER5A DNA MER1_type 20 189 0 302 306 27 36 chr6 51657594 51657705 -137621849 + L3 LINE CR1 1466 1575 -2 239 218 0 0 chr6 51658594 51658649 -137620905 + (CA)n Simple_repeat Simple_repeat 1 55 0 259 177 113 0 chr6 51659373 51659434 -137620120 + MIR SINE MIR 87 145 -63 2670 60 3 0 chr6 51659444 51659777 -137619777 + L1PA5 LINE L1 5821 6154 0 232 291 25 25 chr6 51660894 51660973 -137618581 - MIR SINE MIR -21 241 163 202 200 0 25 chr6 51661731 51661771 -137617783 + G-rich Low_complexity Low_complexity 3 41 0 700 203 78 32 chr6 51661961 51662073 -137617481 - LTR16A LTR ERVL 0 450 345 4368 118 7 41 chr6 51662073 51662760 -137616794 - MER4A LTR ERV1 0 664 1 700 203 78 32 chr6 51662760 51662864 -137616690 - LTR16A LTR ERVL -105 345 224 233 133 111 0 chr6 51663490 51663535 -137616019 - MER81 DNA DNA -63 51 2 4498 105 9 3 chr6 51664002 51664633 -137614921 - MER41B LTR ERV1 0 635 1 359 219 62 21 chr6 51664647 51664683 -137614871 - MIR3 SINE MIR -25 183 150 4009 90 19 36 chr6 51664683 51665262 -137614292 - MER61E LTR ERV1 0 569 1 359 219 62 21 chr6 51665262 51665321 -137614233 - MIR3 SINE MIR -58 150 84 364 274 67 15 chr6 51665534 51665669 -137613885 - MIR SINE MIR -53 209 68 360 0 0 0 chr6 51665896 51665936 -137613618 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 477 0 0 0 chr6 51666214 51666267 -137613287 + (TG)n Simple_repeat Simple_repeat 2 54 0 585 277 216 26 chr6 51668301 51668644 -137610910 + LTR16C LTR ERVL 1 408 -83 277 263 7 39 chr6 51668995 51669305 -137610249 + C-rich Low_complexity Low_complexity 1 299 0 221 327 93 9 chr6 51671446 51671553 -137608001 + L2 LINE L2 2058 2173 -1141 1014 189 53 33 chr6 51671577 51671821 -137607733 - L1MB8 LINE L1 -1 6177 5929 1074 276 114 59 chr6 51671821 51672866 -137606688 + L2 LINE L2 2208 3313 0 352 262 8 74 chr6 51672881 51673003 -137606551 + MIR SINE MIR 40 153 -109 238 265 0 0 chr6 51673692 51673741 -137605813 - L2 LINE L2 -86 3186 3138 180 319 0 21 chr6 51673805 51673852 -137605702 - L2 LINE L2 -85 3187 3142 2217 82 0 0 chr6 51673890 51674205 -137605349 - AluY SINE Alu 0 316 2 264 251 54 143 chr6 51674782 51674985 -137604569 + MIR SINE MIR 1 185 -77 42556 103 17 25 chr6 51675397 51681686 -137597868 + HERVH LTR ERV1 1520 7713 0 2623 118 56 19 chr6 51681686 51682118 -137597436 + LTR7 LTR ERV1 1 448 -2 279 0 0 0 chr6 51682222 51682253 -137597301 + (CA)n Simple_repeat Simple_repeat 1 31 0 200 263 184 0 chr6 51682433 51682509 -137597045 - L2 LINE L2 -3 3269 3180 294 132 0 0 chr6 51682592 51682645 -137596909 + (CA)n Simple_repeat Simple_repeat 1 53 0 4774 191 48 20 chr6 51683418 51684468 -137595086 + Tigger6a DNA MER2_type 5 1083 0 2601 145 5 45 chr6 51684674 51684892 -137594662 - MSTA LTR MaLR -4 424 232 4034 105 59 0 chr6 51684892 51685483 -137594071 + L1PB1 LINE L1 5526 6151 0 2601 145 5 45 chr6 51685483 51685706 -137593848 - MSTA LTR MaLR -196 232 1 453 248 81 20 chr6 51685966 51686115 -137593439 + MIR3 SINE MIR 36 193 -15 524 248 102 0 chr6 51687184 51687321 -137592233 - MIR SINE MIR -36 226 76 333 369 6 24 chr6 51687495 51687663 -137591891 + MIR3 SINE MIR 30 194 -14 501 297 8 8 chr6 51688124 51688242 -137591312 + MIR3 SINE MIR 74 191 -17 502 271 57 0 chr6 51689200 51689322 -137590232 + MER91C DNA MER1_type 1 129 -11 654 267 53 32 chr6 51689351 51689538 -137590016 - MIR SINE MIR -33 229 39 1381 152 0 0 chr6 51691052 51691283 -137588271 - AluSg/x SINE Alu 0 312 82 924 240 120 12 chr6 51692216 51692558 -137586996 + Charlie4a DNA MER1_type 4 382 -126 526 228 0 9 chr6 51692814 51692928 -137586626 + Charlie4a DNA MER1_type 387 499 -9 630 228 138 27 chr6 51693569 51693793 -137585761 - MER112 DNA MER1_type -11 249 1 212 240 0 93 chr6 51694162 51694237 -137585317 + MIR SINE MIR 123 190 -72 2301 159 0 13 chr6 51694798 51695189 -137584365 + MLT1B LTR MaLR 3 388 -2 594 181 285 0 chr6 51695429 51695573 -137583981 + MER5A DNA MER1_type 5 189 0 3838 86 6 0 chr6 51696001 51696510 -137583044 - L1PA7 LINE L1 -2 6152 5641 410 57 16 0 chr6 51696514 51696576 -137582978 + L1P4 LINE L1 5609 5675 -476 222 254 261 36 chr6 51698503 51698944 -137580610 + L2 LINE L2 1479 2018 -1296 435 262 141 7 chr6 51700485 51700634 -137578920 - MIR3 SINE MIR -9 199 31 1376 191 8 4 chr6 51701015 51701266 -137578288 + L1MDa LINE L1 24 275 -6265 4492 229 78 14 chr6 51701474 51703206 -137576348 + L1MDa LINE L1 2328 4173 -2367 1105 224 60 8 chr6 51703202 51703598 -137575956 + L1MD2 LINE L1 5882 6349 -10 * 623 278 168 9 chr6 51706463 51706808 -137572746 - L1MC4a LINE L1 -1842 5966 5567 23 33 0 0 chr6 51708062 51708092 -137571462 + AT_rich Low_complexity Low_complexity 1 30 0 366 256 154 19 chr6 51708443 51708599 -137570955 - L1MC5 LINE L1 -35 7926 7750 564 15 0 0 chr6 51709174 51709239 -137570315 + (CA)n Simple_repeat Simple_repeat 2 66 0 2237 100 0 0 chr6 51710165 51710464 -137569090 + AluSx SINE Alu 5 303 -9 350 255 64 14 chr6 51712069 51712210 -137567344 - MER114 LTR ERV -1 647 500 647 128 3 10 chr6 51712210 51712321 -137567233 + L1MC/D LINE L1 5456 5561 -623 4674 187 40 38 chr6 51712331 51713341 -137566213 - L1MD2 LINE L1 -1 6358 5331 2317 67 0 7 chr6 51713341 51713639 -137565915 - AluY SINE Alu -15 296 1 4674 187 40 38 chr6 51713639 51713865 -137565689 - L1MD2 LINE L1 -1028 5331 5107 813 201 160 5 chr6 51713869 51714063 -137565491 + MER1B DNA MER1_type 1 224 -73 2375 253 48 8 chr6 51714246 51714978 -137564576 - L1MD2 LINE L1 -1230 4916 4156 956 243 95 0 chr6 51714980 51715326 -137564228 - MER114 LTR ERV -180 468 90 2241 85 0 0 chr6 51715615 51715908 -137563646 + AluY SINE Alu 1 293 -18 1716 201 88 34 chr6 51716754 51717197 -137562357 - MLT1C LTR MaLR 0 467 1 2123 112 6 6 chr6 51717232 51717544 -137562010 + AluSx SINE Alu 1 312 0 714 269 231 38 chr6 51718773 51718962 -137560592 + LTR50 LTR ERVL 8 159 -636 7433 52 10 0 chr6 51718962 51719912 -137559642 - L1PA6 LINE L1 0 6154 5203 714 269 231 38 chr6 51719912 51720379 -137559175 + LTR50 LTR ERVL 159 791 -4 344 134 90 0 chr6 51722428 51722495 -137557059 - MLT1A1 LTR MaLR 0 365 293 2051 109 0 0 chr6 51722537 51722866 -137556688 + AluSg SINE Alu 1 329 0 1783 152 17 3 chr6 51722866 51723162 -137556392 - MLT1A1 LTR MaLR -65 300 1 340 108 185 0 chr6 51724237 51724302 -137555252 - MER58 DNA MER1_type -35 2385 2309 1856 169 0 3 chr6 51725199 51725512 -137554042 + AluJb SINE Alu 1 312 0 1062 152 100 48 chr6 51725529 51725779 -137553775 + MER33 DNA MER1_type 35 297 -27 687 149 195 0 chr6 51725960 51726114 -137553440 + MER53 DNA DNA 3 186 -3 4771 69 20 11 chr6 51726804 51727457 -137552097 - SVA Other Other 0 1386 728 227 294 29 15 chr6 51730002 51730070 -137549484 + MIR SINE MIR 82 150 -58 188 284 54 40 chr6 51731857 51731931 -137547623 + MIR SINE MIR 54 128 -80 238 333 85 35 chr6 51732606 51732747 -137546807 - MIR3 SINE MIR -22 186 39 539 284 47 12 chr6 51733345 51733514 -137546040 - MIR SINE MIR -78 184 10 451 306 182 24 chr6 51733531 51733740 -137545814 + MIR SINE MIR 21 262 0 812 248 46 53 chr6 51733891 51734058 -137545496 + MLT1B LTR MaLR 1 167 -223 2181 104 0 3 chr6 51734058 51734356 -137545198 + AluSc SINE Alu 1 297 -12 812 248 46 53 chr6 51734356 51734470 -137545084 + MLT1B LTR MaLR 167 280 -110 1311 233 43 64 chr6 51734694 51735270 -137544284 - L1MC5 LINE L1 -54 7907 7344 1689 224 97 62 chr6 51735445 51735980 -137543574 - MLT2B3 LTR ERVL 0 554 1 463 326 114 26 chr6 51736065 51736220 -137543334 + L2 LINE L2 2554 2694 -619 1812 169 0 6 chr6 51736220 51736533 -137543021 - AluJo SINE Alu -1 311 1 463 326 114 26 chr6 51736533 51737066 -137542488 + L2 LINE L2 2694 3303 -10 524 246 64 12 chr6 51737273 51737444 -137542110 - LTR16C LTR ERVL -29 462 283 252 260 41 41 chr6 51737469 51737592 -137541962 - LTR16C LTR ERVL -310 181 59 244 250 23 34 chr6 51737983 51738071 -137541483 - MIR SINE MIR -59 149 63 531 263 74 34 chr6 51738346 51738521 -137541033 + MIR3 SINE MIR 10 191 -17 659 237 40 20 chr6 51738821 51739019 -137540535 + L2 LINE L2 3090 3291 -22 198 0 0 0 chr6 51739028 51739050 -137540504 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 490 289 67 7 chr6 51739057 51739206 -137540348 + MIR3 SINE MIR 7 164 -44 321 281 12 0 chr6 51739361 51739443 -137540111 - L2 LINE L2 -6 3266 3184 246 62 0 0 chr6 51740592 51740624 -137538930 + (TA)n Simple_repeat Simple_repeat 1 32 0 563 211 66 7 chr6 51740680 51740832 -137538722 + LTR33 LTR ERVL 2 162 -359 570 255 66 23 chr6 51740863 51741122 -137538432 + LTR33 LTR ERVL 237 506 -15 454 300 59 12 chr6 51741579 51741832 -137537722 + L2 LINE L2 2817 3081 -232 234 0 0 0 chr6 51741880 51741906 -137537648 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 367 310 10 0 chr6 51742308 51742408 -137537146 + MIR SINE MIR 35 135 -73 330 237 67 74 chr6 51742702 51742837 -137536717 + LTR16C LTR ERVL 1 134 -357 625 247 89 43 chr6 51742872 51743107 -137536447 + LTR16C LTR ERVL 205 450 -41 195 314 57 0 chr6 51743112 51743182 -137536372 + L2 LINE L2 3004 3077 -195 613 223 70 94 chr6 51745275 51745531 -137534023 - MIR SINE MIR -10 252 3 633 299 132 37 chr6 51745650 51746081 -137533473 - L2 LINE L2 0 3313 2842 183 222 22 0 chr6 51746387 51746432 -137533122 - L3b LINE CR1 -5 1578 1533 1016 264 8 8 chr6 51747127 51747373 -137532181 + MIR SINE MIR 17 262 0 236 133 100 83 chr6 51747376 51747436 -137532118 + MER5A DNA MER1_type 129 189 0 201 121 0 0 chr6 51747534 51747567 -137531987 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1001 216 63 18 chr6 51747943 51748165 -137531389 + MIR SINE MIR 10 241 -21 254 259 0 0 chr6 51748358 51748416 -137531138 + MLT1F LTR MaLR 1 58 -484 1295 246 78 0 chr6 51748484 51748793 -137530761 + MLT1F LTR MaLR 210 542 0 308 264 119 77 chr6 51748849 51749084 -137530470 - MLT1L LTR MaLR -154 461 217 229 290 72 0 chr6 51749104 51749173 -137530381 + L3 LINE CR1 1504 1577 0 282 224 235 10 chr6 51749209 51749307 -137530247 + L2 LINE L2 3193 3312 -1 196 388 60 0 chr6 51749307 51749374 -137530180 + L2 LINE L2 3150 3220 -52 270 234 75 21 chr6 51749414 51749508 -137530046 + L2 LINE L2 3208 3306 -7 374 299 69 7 chr6 51750826 51750970 -137528584 - MIR SINE MIR -108 154 2 1703 188 190 5 chr6 51751105 51751531 -137528023 - MLT1D LTR MaLR 0 505 1 384 271 155 13 chr6 51751580 51751735 -137527819 - MIR SINE MIR -67 195 19 194 283 85 38 chr6 51752458 51752564 -137526990 + MIR SINE MIR 106 216 -46 265 246 15 0 chr6 51752645 51752710 -137526844 + CT-rich Low_complexity Low_complexity 3 68 0 1297 164 40 0 chr6 51752806 51753032 -137526522 + MER46A DNA MER2_type 2 236 0 229 182 0 23 chr6 51753239 51753283 -137526271 + GA-rich Low_complexity Low_complexity 2 44 0 269 204 0 19 chr6 51753385 51753439 -137526115 - L2 LINE L2 -1 3271 3219 189 214 0 0 chr6 51754004 51754046 -137525508 + (CA)n Simple_repeat Simple_repeat 2 43 0 372 43 0 0 chr6 51754325 51754371 -137525183 + (TG)n Simple_repeat Simple_repeat 2 47 0 242 270 94 40 chr6 51754831 51754991 -137524563 - MIR SINE MIR -56 206 38 976 262 87 3 chr6 51755427 51755713 -137523841 + LTR16C LTR ERVL 182 491 0 198 244 0 22 chr6 51755732 51755777 -137523777 - MIR SINE MIR -195 67 24 417 192 0 0 chr6 51756959 51757032 -137522522 - Tigger5 DNA MER2_type 0 2323 2251 317 200 0 0 chr6 51757001 51757056 -137522498 - Tigger5 DNA MER2_type -2268 55 1 * 2156 110 0 0 chr6 51757317 51757616 -137521938 - AluSx SINE Alu -10 302 4 508 317 56 118 chr6 51757905 51758372 -137521182 - L2 LINE L2 -18 3254 2817 534 245 43 12 chr6 51810169 51810332 -137469222 + AluJb SINE Alu 140 307 -5 312 0 41 20 chr6 51810553 51810602 -137468952 + (TA)n Simple_repeat Simple_repeat 2 51 0 537 272 44 19 chr6 51811563 51811885 -137467669 + L1MDa LINE L1 1311 1635 -4905 306 248 128 8 chr6 51811888 51812005 -137467549 + L1ME1 LINE L1 6028 6158 -8 202 206 32 0 chr6 51813253 51813316 -137466238 + CT-rich Low_complexity Low_complexity 4 68 0 438 337 11 6 chr6 51813405 51813580 -137465974 + (TCCA)n Simple_repeat Simple_repeat 1 176 0 330 262 66 38 chr6 51814121 51814304 -137465250 - MIR SINE MIR -63 199 12 218 341 55 0 chr6 51814618 51814709 -137464845 - MIR SINE MIR -48 214 119 654 234 64 23 chr6 51815856 51816027 -137463527 + MLT1C LTR MaLR 290 467 0 24 0 0 0 chr6 51816348 51816372 -137463182 + AT_rich Low_complexity Low_complexity 1 24 0 899 117 8 8 chr6 51816505 51816633 -137462921 - AluSq/x SINE Alu -182 130 3 527 199 136 57 chr6 51816915 51817091 -137462463 - MLT1J2 LTR MaLR -143 307 118 499 283 75 10 chr6 51817219 51817469 -137462085 - MLT2E LTR ERVL -380 283 7 404 316 86 0 chr6 51817496 51817670 -137461884 + L2 LINE L2 3117 3305 -8 336 323 62 21 chr6 51817679 51817871 -137461683 - MIR SINE MIR -18 244 45 816 121 0 0 chr6 51818038 51818154 -137461400 - THE1B LTR MaLR -248 116 1 6131 192 50 7 chr6 51818154 51819375 -137460179 - L1PBa LINE L1 -5588 1275 3 715 246 14 14 chr6 51819539 51819746 -137459808 + L1ME2 LINE L1 5740 5946 -218 258 0 71 0 chr6 51819768 51819810 -137459744 + (TG)n Simple_repeat Simple_repeat 2 46 0 1741 141 22 4 chr6 51819810 51820086 -137459468 - AluSg SINE Alu -29 281 1 1439 248 30 23 chr6 51820159 51820631 -137458923 - L1M4 LINE L1 -1199 4947 4473 227 268 0 0 chr6 51820630 51820686 -137458868 + L1ME2 LINE L1 6024 6079 -85 * 1232 146 5 18 chr6 51822171 51822390 -137457164 + AluSp SINE Alu 1 216 -97 2101 85 30 0 chr6 51823634 51823930 -137455624 - AluSx SINE Alu 0 306 3 2219 85 3 3 chr6 51823940 51824255 -137455299 - AluY SINE Alu 0 315 1 597 202 8 8 chr6 51824255 51824379 -137455175 - MLT1D LTR MaLR -381 124 1 795 76 19 0 chr6 51824560 51824665 -137454889 - MER41-int LTR ERV1 -4766 1180 1074 * 3967 112 29 30 chr6 51824649 51825275 -137454279 - MER41-int LTR ERV1 -5321 625 1 24 32 0 0 chr6 51825353 51825384 -137454170 + AT_rich Low_complexity Low_complexity 1 31 0 313 276 81 60 chr6 51826179 51826646 -137452908 - L1M4 LINE L1 -3558 2588 2112 3362 152 2 17 chr6 51826911 51827445 -137452109 + MER1A DNA MER1_type 1 526 -1 407 304 101 51 chr6 51827599 51828053 -137451501 - HAL1 LINE L1 -774 1733 1257 3128 146 17 2 chr6 51828574 51829052 -137450502 - MER1A DNA MER1_type 0 529 45 258 161 0 0 chr6 51830711 51830767 -137448787 - L1PA15 LINE L1 -21 6144 6089 3232 136 15 0 chr6 51832733 51833211 -137446343 + MER1A DNA MER1_type 45 529 0 2420 123 25 136 chr6 51833494 51834139 -137445415 + LTR10A LTR ERV1 1 585 -6 513 318 79 39 chr6 51834396 51834802 -137444752 + HAL1 LINE L1 1257 1678 -829 3498 147 4 0 chr6 51835010 51835535 -137444019 - MER1A DNA MER1_type 0 527 1 283 251 93 58 chr6 51835738 51836221 -137443333 + L1MDa LINE L1 2463 2953 -3587 32 101 0 0 chr6 51836310 51836419 -137443135 + AT_rich Low_complexity Low_complexity 1 109 0 684 314 105 24 chr6 51836515 51837564 -137441990 + L1MDa LINE L1 3024 4157 -2383 545 239 51 0 chr6 51837664 51837781 -137441773 - Charlie3 DNA MER1_type -2543 167 45 2940 212 39 14 chr6 51840936 51841094 -137438460 + L1MC3 LINE L1 6918 7071 -714 1231 231 21 80 chr6 51841094 51841480 -137438074 + MLT1A1 LTR MaLR 1 363 -2 2940 212 39 14 chr6 51841480 51842015 -137437539 + L1MC3 LINE L1 7071 7628 -157 1165 229 88 0 chr6 51842013 51842318 -137437236 + L1MA8 LINE L1 5950 6281 -10 * 542 277 12 0 chr6 51842328 51842494 -137437060 + L1MC3 LINE L1 7615 7782 -3 1530 204 0 23 chr6 51843044 51843473 -137436081 - AluJb SINE Alu 0 433 12 854 232 53 23 chr6 51844887 51845208 -137434346 + L1MC1 LINE L1 5999 7777 -8 6109 216 40 5 chr6 51847368 51849301 -137430253 + L1 LINE L1 3317 5349 -797 578 156 0 48 chr6 51849301 51849487 -137430067 + (TA)n Simple_repeat Simple_repeat 1 177 0 501 223 0 32 chr6 51849507 51849855 -137429699 + (TA)n Simple_repeat Simple_repeat 1 336 0 360 238 0 33 chr6 51849868 51850049 -137429505 + (TA)n Simple_repeat Simple_repeat 2 176 0 272 260 0 13 chr6 51850105 51850182 -137429372 - HAL1 LINE L1 -289 2218 2143 4069 54 4 0 chr6 51850224 51850723 -137428831 - L1PA7 LINE L1 0 6154 5654 2334 50 0 3 chr6 51850723 51851006 -137428548 + L1PA7 LINE L1 5360 5641 -513 258 161 0 0 chr6 51851098 51851154 -137428400 - L1PA15 LINE L1 -21 6144 6089 222 274 128 0 chr6 51852841 51852958 -137426596 + MIR SINE MIR 17 148 -60 351 203 78 0 chr6 51853235 51853299 -137426255 + FRAM/FAM SINE Alu 1 65 -101 23 0 0 0 chr6 51853399 51853422 -137426132 + AT_rich Low_complexity Low_complexity 1 23 0 323 306 94 6 chr6 51854060 51854230 -137425324 + LTR16C LTR ERVL 244 428 -63 2004 145 0 40 chr6 51854240 51854565 -137424989 - AluJo SINE Alu 0 312 1 374 189 63 0 chr6 51854629 51854724 -137424830 + LTR33A LTR ERVL 373 473 -50 1768 151 57 13 chr6 51854727 51855026 -137424528 + AluJb SINE Alu 1 312 0 3923 135 32 6 chr6 51855169 51855791 -137423763 + MER51C LTR ERV1 1 638 -2 288 323 15 23 chr6 51856636 51856769 -137422785 - MER5B DNA MER1_type -1 177 46 214 278 83 0 chr6 51856884 51856992 -137422562 - MIR3 SINE MIR -78 130 14 413 198 9 0 chr6 51857509 51857615 -137421939 + (TGGA)n Simple_repeat Simple_repeat 1 107 0 240 269 15 15 chr6 51857718 51857785 -137421769 + GA-rich Low_complexity Low_complexity 2 68 0 257 309 45 9 chr6 51858035 51858145 -137421409 - L2 LINE L2 0 3272 3159 265 297 0 0 chr6 51858243 51858317 -137421237 + MER5A DNA MER1_type 9 82 -107 191 277 15 0 chr6 51859176 51859241 -137420313 - MIR3 SINE MIR -49 159 94 626 278 97 104 chr6 51859615 51859768 -137419786 + MLT1K LTR MaLR 18 171 -417 1918 130 10 10 chr6 51859768 51860060 -137419494 + AluSx SINE Alu 1 292 -20 222 37 0 0 chr6 51860060 51860087 -137419467 + (CA)n Simple_repeat Simple_repeat 2 28 0 626 278 97 104 chr6 51860087 51860440 -137419114 + MLT1K LTR MaLR 169 521 -67 956 143 63 81 chr6 51860470 51860693 -137418861 + MER20 DNA MER1_type 1 219 0 734 251 30 15 chr6 51861635 51861834 -137417720 - MIR SINE MIR -27 235 34 233 306 12 0 chr6 51862484 51862569 -137416985 + L2 LINE L2 3224 3309 -4 24 0 0 0 chr6 51864062 51864086 -137415468 + AT_rich Low_complexity Low_complexity 1 24 0 882 183 20 7 chr6 51864962 51865115 -137414439 - MER7A DNA MER2_type -1 335 181 1087 151 63 39 chr6 51865234 51865440 -137414114 - MER7A DNA MER2_type -135 211 3 475 81 0 0 chr6 51865492 51865554 -137414000 - MER41-int LTR ERV1 -68 5878 5817 836 195 296 7 chr6 51866000 51866308 -137413246 - LTR50 LTR ERVL -317 478 82 531 167 0 0 chr6 51866390 51866474 -137413080 - MER41A-int LTR ERV1 -2314 2701 2618 * 3859 112 34 93 chr6 51866460 51867253 -137412301 - MER41A-int LTR ERV1 -3840 3976 3231 3724 130 30 29 chr6 51867235 51867859 -137411695 - MER41A-int LTR ERV1 -5321 625 1 * 24 32 0 0 chr6 51867937 51867968 -137411586 + AT_rich Low_complexity Low_complexity 1 31 0 3960 96 9 4 chr6 51868119 51868670 -137410884 - MER41A LTR ERV1 0 554 1 3378 186 68 18 chr6 51868726 51869515 -137410039 + L1M4 LINE L1 3645 4473 -1673 4555 217 35 19 chr6 51869655 51870599 -137408955 + L1PA13 LINE L1 2 960 -5827 288 0 0 0 chr6 51870697 51870729 -137408825 + (CTG)n Simple_repeat Simple_repeat 1 32 0 29 28 0 0 chr6 51870981 51871017 -137408537 + AT_rich Low_complexity Low_complexity 1 36 0 237 217 35 26 chr6 51871046 51871161 -137408393 + (TA)n Simple_repeat Simple_repeat 1 116 0 753 300 146 40 chr6 51871411 51873023 -137406531 + L1M4 LINE L1 2940 4721 -1425 215 311 0 0 chr6 51874053 51874121 -137405433 + G-rich Low_complexity Low_complexity 1 68 0 234 217 83 0 chr6 51876038 51876098 -137403456 + MLT1J LTR MaLR 437 501 -10 266 263 44 15 chr6 51876375 51876512 -137403042 - HAL1 LINE L1 -940 1567 1427 234 91 0 0 chr6 51876554 51876587 -137402967 + (T)n Simple_repeat Simple_repeat 1 33 0 563 120 120 9 chr6 51876670 51876778 -137402776 - 5S rRNA rRNA 0 121 2 265 322 33 43 chr6 51876971 51877182 -137402372 - L1MEd LINE L1 -4863 1256 1048 2557 67 0 6 chr6 51877698 51878011 -137401543 + AluY SINE Alu 1 311 0 899 241 53 34 chr6 51878290 51878680 -137400874 + L1M3de LINE L1 1298 1940 -4521 343 248 120 0 chr6 51878683 51878800 -137400754 + L1ME1 LINE L1 6028 6158 -8 258 105 0 0 chr6 51879343 51879381 -137400173 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 1155 198 56 31 chr6 51879608 51879922 -137399632 + MER93b LTR ERV1 74 373 0 203 250 18 0 chr6 51880316 51880372 -137399182 + GA-rich Low_complexity Low_complexity 6 62 0 315 104 0 0 chr6 51880393 51880441 -137399113 + (TG)n Simple_repeat Simple_repeat 1 48 0 22032 51 5 1 chr6 51880733 51884226 -137395328 + L1PA5 LINE L1 2659 6153 -1 268 277 176 13 chr6 51885393 51885552 -137394002 - MIR SINE MIR -77 185 1 199 245 0 0 chr6 51886222 51886271 -137393283 + L2 LINE L2 3180 3228 -85 296 271 8 74 chr6 51886956 51887078 -137392476 - MIR SINE MIR -109 153 40 504 282 112 62 chr6 51887093 51887451 -137392103 - L2 LINE L2 0 3272 2897 2264 132 0 3 chr6 51887460 51887771 -137391783 + AluSx SINE Alu 1 310 -2 407 317 49 6 chr6 51888351 51888515 -137391039 - MIR3 SINE MIR -8 200 30 202 206 32 0 chr6 51889512 51889575 -137389979 + CT-rich Low_complexity Low_complexity 4 68 0 197 273 7 26 chr6 51889684 51889838 -137389716 + (TCCA)n Simple_repeat Simple_repeat 1 151 0 259 277 80 0 chr6 51890362 51890474 -137389080 + MIR3 SINE MIR 14 134 -74 259 272 25 25 chr6 51890599 51890680 -137388874 + MER5B DNA MER1_type 50 130 -48 676 222 25 12 chr6 51890959 51891121 -137388433 + MER3 DNA MER1_type 12 128 -81 * 1236 229 158 8 chr6 51891117 51891483 -137388071 - MER110A LTR ERV1 -47 421 1 2007 228 109 7 chr6 51891572 51892020 -137387534 + REP3 LTR ERV 3 496 -66 403 125 47 0 chr6 51892019 51892083 -137387471 + AluSc SINE Alu 227 293 -6 * 387 259 0 0 chr6 51892079 51892160 -137387394 + REP3 LTR ERV 482 562 0 * 3837 266 30 91 chr6 51892227 51893989 -137385565 + L1M2 LINE L1 10 1663 -5186 340 290 23 86 chr6 51893991 51894212 -137385342 + PABL_B LTR ERV1 1 207 -460 1474 299 17 21 chr6 51894407 51894882 -137384672 + L1M2 LINE L1 1191 1663 -5186 871 215 24 19 chr6 51895381 51895590 -137383964 + PABL_B LTR ERV1 458 667 0 652 177 0 0 chr6 51895590 51895720 -137383834 + L1M2 LINE L1 1662 1791 -5058 15798 134 44 11 chr6 51895729 51896949 -137382605 + L1PBa LINE L1 3 1181 -5682 2378 116 28 25 chr6 51896949 51897312 -137382242 + THE1B LTR MaLR 1 364 0 15798 134 44 11 chr6 51897312 51898681 -137380873 + L1PBa LINE L1 1181 2679 -4184 3234 104 7 4 chr6 51898685 51899146 -137380408 + L1PB2 LINE L1 5683 6144 -7 5152 199 21 15 chr6 51899170 51900885 -137378669 + L1M2 LINE L1 1775 3500 -3348 497 240 26 19 chr6 51900911 51901065 -137378489 + L1M2 LINE L1 3454 3608 -3240 544 181 9 0 chr6 51901168 51901273 -137378281 - MER41A-int LTR ERV1 -7650 106 1 4737 63 5 0 chr6 51902124 51902675 -137376879 - MER41A LTR ERV1 0 554 1 825 198 69 17 chr6 51902731 51902963 -137376591 + L1M2 LINE L1 4347 4590 -2258 480 107 0 60 chr6 51903133 51903217 -137376337 + AluSp/q SINE Alu 232 310 -3 4003 174 32 32 chr6 51903230 51904282 -137375272 + L1PB4 LINE L1 3511 4561 -1595 2131 124 0 0 chr6 51904282 51904616 -137374938 + AluSx SINE Alu 1 334 0 4003 174 32 32 chr6 51904616 51906101 -137373453 + L1PB4 LINE L1 4561 6151 -5 341 324 71 20 chr6 51906130 51906426 -137373128 + L1MC/D LINE L1 5281 5591 -768 678 311 41 13 chr6 51906493 51906808 -137372746 - L1M4 LINE L1 -1034 5112 4789 182 125 0 25 chr6 51906890 51906930 -137372624 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 507 173 97 102 chr6 51907119 51907345 -137372209 - LTR37A LTR ERV1 -9 417 193 854 152 0 23 chr6 51907670 51907802 -137371752 + FLAM_C SINE Alu 1 129 -14 184 319 9 80 chr6 51908032 51908145 -137371409 - MIR SINE MIR -83 125 21 255 260 21 42 chr6 51908690 51908786 -137370768 - MIR SINE MIR -83 125 32 249 311 148 33 chr6 51909465 51909587 -137369967 + MIR SINE MIR 34 169 -93 405 213 30 101 chr6 51909684 51909853 -137369701 - MIR3 SINE MIR -45 163 7 312 0 41 20 chr6 51910487 51910536 -137369018 + (TA)n Simple_repeat Simple_repeat 2 51 0 1798 162 26 10 chr6 51910756 51911059 -137368495 - AluJo SINE Alu -4 308 1 666 274 43 21 chr6 51911272 51911506 -137368048 - MIR SINE MIR -10 252 14 228 35 0 0 chr6 51911979 51912008 -137367546 + (CAG)n Simple_repeat Simple_repeat 3 31 0 392 264 40 27 chr6 51912531 51912679 -137366875 + MER5A DNA MER1_type 18 167 -22 370 300 9 18 chr6 51912587 51912697 -137366857 - MER5A DNA MER1_type -63 126 18 * 253 303 41 28 chr6 51913307 51913452 -137366102 + LTR67 LTR ERVL 406 552 -5 314 297 34 34 chr6 51913459 51913607 -137365947 - MIR SINE MIR -101 161 14 1158 283 110 13 chr6 51913617 51914091 -137365463 - LTR33 LTR ERVL 0 521 2 5561 234 35 26 chr6 51917111 51918043 -137361511 + L1PA15 LINE L1 132 1055 -5742 288 0 0 0 chr6 51918043 51918075 -137361479 + (CTG)n Simple_repeat Simple_repeat 1 32 0 5561 234 35 26 chr6 51918075 51919238 -137360316 + L1PA15 LINE L1 1055 2207 -4590 212 0 36 0 chr6 51919238 51919266 -137360288 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2457 149 26 65 chr6 51919268 51919652 -137359902 - L1PB3 LINE L1 -7 6147 5782 411 21 0 0 chr6 51919652 51919700 -137359854 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 2457 149 26 65 chr6 51919700 51919777 -137359777 - L1PB3 LINE L1 -372 5782 5704 5561 234 35 26 chr6 51919777 51919972 -137359582 + L1PA15 LINE L1 2207 2671 -4126 2574 148 21 23 chr6 51919972 51920177 -137359377 + MSTB LTR MaLR 1 205 -221 4920 161 62 60 chr6 51920177 51921246 -137358308 - MER11C LTR ERVK 0 1071 1 2574 148 21 23 chr6 51921246 51921467 -137358087 + MSTB LTR MaLR 205 426 0 14424 187 35 16 chr6 51921470 51922569 -137356985 + L1PA15 LINE L1 2670 3746 -3071 243 0 0 0 chr6 51922569 51922596 -137356958 + (TA)n Simple_repeat Simple_repeat 1 27 0 14424 187 35 16 chr6 51922596 51925517 -137354037 + L1PA15 LINE L1 3746 6815 -2 744 146 0 0 chr6 51925557 51925660 -137353894 - U6 snRNA snRNA -4 103 1 1004 212 35 74 chr6 51925661 51925776 -137353778 + MSTD LTR MaLR 77 195 -201 2163 151 125 10 chr6 51925776 51926160 -137353394 + MSTA LTR MaLR 1 428 0 1004 212 35 74 chr6 51926160 51926327 -137353227 + MSTD LTR MaLR 195 348 -48 2514 211 53 7 chr6 51926330 51927078 -137352476 + L1M4 LINE L1 4465 5381 -765 963 229 48 0 chr6 51927114 51927302 -137352252 + MER63A DNA MER1_type 13 209 -1 536 275 104 53 chr6 51928012 51928386 -137351168 + MLT1I LTR MaLR 1 393 -16 1280 94 12 0 chr6 51928737 51928907 -137350647 - AluSx SINE Alu -140 172 1 1994 121 0 17 chr6 51929090 51929388 -137350166 - AluSx SINE Alu -19 293 1 189 0 0 0 chr6 51929454 51929475 -137350079 + (T)n Simple_repeat Simple_repeat 1 21 0 729 249 148 0 chr6 51929897 51930126 -137349428 - MLT1J LTR MaLR -4 507 245 1212 276 39 18 chr6 51930250 51930692 -137348862 - L1MCc LINE L1 -5938 485 35 270 323 142 19 chr6 51930711 51931027 -137348527 + L1M4c LINE L1 1299 1653 -4731 256 182 18 18 chr6 51931032 51931087 -137348467 - MLT1J LTR MaLR -8 503 449 557 187 47 0 chr6 51932544 51932651 -137346903 - L1MCa LINE L1 -6308 118 7 288 305 0 0 chr6 51933051 51933133 -137346421 + (TG)n Simple_repeat Simple_repeat 2 83 0 1857 162 3 10 chr6 51933984 51934274 -137345280 + AluJo SINE Alu 1 288 -24 471 309 62 19 chr6 51934398 51934608 -137344946 + MIR SINE MIR 31 249 -13 * 501 283 83 19 chr6 51934606 51934811 -137344743 - L2 LINE L2 -4 3309 3092 549 271 75 10 chr6 51934813 51935063 -137344491 + MLT2E LTR ERVL 7 283 -380 536 207 134 56 chr6 51935188 51935367 -137344187 + MLT1J2 LTR MaLR 115 307 -143 566 322 73 50 chr6 51935460 51935646 -137343908 + L1 LINE L1 3110 3290 -2856 2206 121 0 13 chr6 51935646 51935959 -137343595 + AluSx SINE Alu 1 309 -3 566 322 73 50 chr6 51935959 51936375 -137343179 + L1 LINE L1 3290 3726 -2420 2688 268 206 26 chr6 51936410 51938045 -137341509 + HAL1 LINE L1 12 1940 -567 935 222 31 73 chr6 51938255 51938543 -137341011 - MER93b LTR ERV1 0 373 98 1241 221 127 82 chr6 51939301 51939933 -137339621 - MER93b-int LTR ERV1 -188 4748 4089 507 183 32 0 chr6 51939985 51940078 -137339476 - LTR49-int LTR ERV1 -906 5425 5330 * 2077 196 66 5 chr6 51940077 51940515 -137339039 - LTR49-int LTR ERV1 -1189 3747 3283 1367 196 121 9 chr6 51940535 51940857 -137338697 - LTR49-int LTR ERV1 -1786 3150 2793 683 238 24 6 chr6 51941680 51941848 -137337706 + MER5B DNA MER1_type 7 177 -1 802 257 147 28 chr6 51943583 51943902 -137335652 - LTR18A LTR ERVL 0 357 1 2327 108 0 0 chr6 51943948 51944244 -137335310 - AluSx SINE Alu -16 296 1 22 0 0 0 chr6 51944660 51944682 -137334872 + AT_rich Low_complexity Low_complexity 1 22 0 333 336 0 0 chr6 51945001 51945105 -137334449 - L1ME1 LINE L1 -74 6092 5989 * 817 240 15 0 chr6 51945101 51945305 -137334249 + L1ME2 LINE L1 5740 5946 -218 187 53 26 26 chr6 51945317 51945355 -137334199 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 2049 108 21 3 chr6 51945358 51945645 -137333909 - AluSg SINE Alu -18 292 1 2212 204 88 15 chr6 51945646 51946189 -137333365 - L1M4 LINE L1 -1091 5055 4473 255 288 0 0 chr6 51946188 51946254 -137333300 + L1ME2 LINE L1 6024 6089 -75 * 2611 261 72 10 chr6 51946365 51947246 -137332308 - L1M4 LINE L1 -1658 4488 3554 257 175 0 0 chr6 51947290 51947330 -137332224 + L1M4 LINE L1 3522 3561 -2585 249 260 208 0 chr6 51947529 51947625 -137331929 + L2 LINE L2 3194 3309 -4 637 234 64 23 chr6 51947688 51947859 -137331695 + MLT1C LTR MaLR 290 467 0 24 0 0 0 chr6 51948180 51948204 -137331350 + AT_rich Low_complexity Low_complexity 1 24 0 249 344 80 13 chr6 51948513 51948664 -137330890 - HAL1b LINE L1 -778 570 410 339 333 26 0 chr6 51948816 51948930 -137330624 + MLT1I LTR MaLR 106 222 -187 607 217 244 17 chr6 51949295 51949475 -137330079 - MER58A DNA MER1_type -3 221 1 1197 301 29 24 chr6 51949479 51950101 -137329453 + HAL1 LINE L1 1716 2340 -167 367 254 83 51 chr6 51950278 51950495 -137329059 - L1ME LINE L1 -476 5645 5422 448 288 62 37 chr6 51950934 51951177 -137328377 - MIR SINE MIR -2 260 12 260 330 55 0 chr6 51951490 51951581 -137327973 - MIR SINE MIR -48 214 119 2275 111 3 0 chr6 51952276 51952574 -137326980 + AluSx SINE Alu 1 299 -13 23 33 0 0 chr6 51952577 51952607 -137326947 + AT_rich Low_complexity Low_complexity 1 30 0 1553 117 36 45 chr6 51952671 51952795 -137326759 + L1MA9 LINE L1 6008 6132 -180 2287 62 3 84 chr6 51952795 51953117 -137326437 + AluY SINE Alu 1 296 -15 1553 117 36 45 chr6 51953117 51953300 -137326254 + L1MA9 LINE L1 6132 6312 0 346 282 111 41 chr6 51953667 51953983 -137325571 - L1ME LINE L1 -400 5721 5384 21 0 0 0 chr6 51954305 51954326 -137325228 + AT_rich Low_complexity Low_complexity 1 21 0 494 326 32 16 chr6 51956103 51956293 -137323261 + MIR3 SINE MIR 6 198 -10 360 0 0 0 chr6 51957226 51957266 -137322288 + (CA)n Simple_repeat Simple_repeat 2 41 0 337 277 151 17 chr6 51957492 51957675 -137321879 + MIR SINE MIR 16 225 -37 916 190 140 14 chr6 51959977 51960198 -137319356 + MER58B DNA MER1_type 93 341 0 388 136 200 16 chr6 51960249 51960374 -137319180 - MER5C DNA MER1_type -50 274 127 2113 90 29 0 chr6 51962157 51962459 -137317095 - AluSx SINE Alu 0 312 3 2280 78 3 3 chr6 51962469 51962784 -137316770 - AluY SINE Alu 0 315 1 617 186 8 8 chr6 51962784 51962908 -137316646 - MLT1D LTR MaLR -381 124 1 28 86 0 0 chr6 51963133 51963203 -137316351 + AT_rich Low_complexity Low_complexity 1 70 0 2155 92 3 3 chr6 51963247 51963561 -137315993 - AluSx SINE Alu 0 314 1 559 262 0 0 chr6 51963738 51963860 -137315694 - MER5C DNA MER1_type -200 124 3 389 243 17 23 chr6 51965486 51965663 -137313891 + CT-rich Low_complexity Low_complexity 1 176 0 800 210 6 6 chr6 51966441 51966603 -137312951 + FRAM SINE Alu 9 170 -6 570 180 70 0 chr6 51966604 51966732 -137312822 - MER57A LTR ERV1 -13 390 254 1427 158 68 2 chr6 51966739 51967026 -137312528 - LTR54 LTR ERV1 -165 333 1 603 242 84 50 chr6 51967500 51967880 -137311674 - HAL1 LINE L1 -1250 1257 865 305 340 68 7 chr6 51967982 51968129 -137311425 - HAL1 LINE L1 -1814 693 538 300 282 70 13 chr6 51968283 51968439 -137311115 - HAL1 LINE L1 -2118 389 225 2259 284 103 42 chr6 51968695 51969865 -137309689 + L2 LINE L2 65 1305 -2009 369 213 0 39 chr6 51969897 51970024 -137309530 + GA-rich Low_complexity Low_complexity 4 125 0 204 279 236 0 chr6 51970024 51970164 -137309390 + L2 LINE L2 1422 1594 -1720 1119 146 0 0 chr6 51970167 51970325 -137309229 + AluJb SINE Alu 136 293 -19 670 304 137 20 chr6 51970346 51970741 -137308813 + L2 LINE L2 1612 2052 -1262 1640 211 141 49 chr6 51970744 51971256 -137308298 - MLT1F1 LTR MaLR -8 559 1 505 278 51 82 chr6 51971263 51971616 -137307938 - MLT1F1-int LTR MaLR -7 1364 1023 281 349 20 14 chr6 51971818 51971964 -137307590 - MLT1F1-int LTR MaLR -496 875 729 61 45 0 0 chr6 51972108 51972197 -137307357 + AT_rich Low_complexity Low_complexity 1 89 0 198 75 0 57 chr6 51972197 51972250 -137307304 + (TTTTTA)n Simple_repeat Simple_repeat 5 54 0 35 0 0 0 chr6 51972250 51972285 -137307269 + AT_rich Low_complexity Low_complexity 1 35 0 279 233 81 12 chr6 51972318 51972404 -137307150 + MER21B LTR ERV1 15 106 -757 * 1055 231 61 88 chr6 51972402 51972813 -137306741 + MER21B LTR ERV1 19 418 -445 830 278 23 4 chr6 51972939 51973205 -137306349 - MLT1F1-int LTR MaLR -765 606 336 273 255 128 11 chr6 51973842 51973936 -137305618 + MIR SINE MIR 88 192 -70 501 245 110 31 chr6 51974190 51974353 -137305201 + MIR3 SINE MIR 4 179 -29 2476 73 3 0 chr6 51974910 51975210 -137304344 + AluSp SINE Alu 1 301 -12 414 305 67 48 chr6 51975283 51975493 -137304061 + L1MC5 LINE L1 7611 7824 -137 2356 106 3 0 chr6 51976901 51977203 -137302351 + AluSg SINE Alu 1 303 -7 771 340 29 12 chr6 51977241 51977820 -137301734 + L1MC4a LINE L1 5255 5843 -1965 1230 104 6 0 chr6 51977935 51978118 -137301436 + MSTA LTR MaLR 1 184 -244 1928 87 0 0 chr6 51978118 51978370 -137301184 + L1PA5 LINE L1 5903 6154 0 982 111 105 0 chr6 51978376 51978538 -137301016 + MSTA LTR MaLR 248 426 0 255 174 0 0 chr6 51978548 51978594 -137300960 + MER4-int LTR ERV1 1111 1156 -5442 1266 230 38 13 chr6 51979099 51979480 -137300074 + L1ME1 LINE L1 5665 6082 -82 224 273 0 0 chr6 51979542 51979597 -137299957 + CT-rich Low_complexity Low_complexity 4 58 0 223 196 36 54 chr6 51979729 51979785 -137299769 - MIR SINE MIR -61 147 93 748 250 113 15 chr6 51980160 51980488 -137299066 + L1MC4a LINE L1 5625 5984 -1824 2068 190 108 32 chr6 51980605 51980688 -137298866 + L1MD2 LINE L1 1 76 -6464 666 0 79 0 chr6 51980688 51980802 -137298752 + (TA)n Simple_repeat Simple_repeat 2 124 0 2068 190 108 32 chr6 51980802 51981217 -137298337 + L1MD2 LINE L1 76 537 -6003 2793 209 115 53 chr6 51981227 51981356 -137298198 + L1MD2 LINE L1 585 705 -5835 2577 66 0 0 chr6 51981356 51981657 -137297897 - AluY SINE Alu -10 301 1 2793 209 115 53 chr6 51981657 51982713 -137296841 + L1MD2 LINE L1 705 1991 -4549 * 7982 175 17 7 chr6 51982708 51984114 -137295440 + MSTA-int LTR MaLR 232 1651 0 2423 141 95 0 chr6 51984114 51984505 -137295049 + MSTA LTR MaLR 1 428 0 9670 214 53 28 chr6 51984510 51985663 -137293891 + L1MD2 LINE L1 2795 3918 -2718 2135 139 7 0 chr6 51985663 51985973 -137293581 + AluJb SINE Alu 1 312 0 9670 214 53 28 chr6 51985973 51986454 -137293100 + L1MD2 LINE L1 3918 4386 -2250 2119 135 0 3 chr6 51986454 51986751 -137292803 - AluSx SINE Alu -16 296 1 9670 214 53 28 chr6 51986751 51987247 -137292307 + L1MD2 LINE L1 4386 4868 -1768 2248 99 7 7 chr6 51987247 51987540 -137292014 - AluSx SINE Alu -19 293 1 9670 214 53 28 chr6 51987540 51988532 -137291022 + L1MD2 LINE L1 4868 5986 -650 4316 151 17 5 chr6 51988536 51989303 -137290251 - L1MA9 LINE L1 -31 6281 5506 2171 217 45 35 chr6 51989306 51989628 -137289926 + L1MD2 LINE L1 5971 6303 -450 2306 110 3 3 chr6 51989628 51989937 -137289617 + AluSg SINE Alu 1 309 -1 2171 217 45 35 chr6 51989937 51990163 -137289391 + L1MD2 LINE L1 6303 6525 -228 302 196 43 54 chr6 51990142 51990192 -137289362 + L1MD3 LINE L1 8299 8349 -40 * 2116 144 73 52 chr6 51990192 51990615 -137288939 + MSTB1 LTR MaLR 1 432 0 302 196 43 54 chr6 51990615 51990656 -137288898 + L1MD3 LINE L1 8349 8389 0 1343 205 16 24 chr6 51991127 51991381 -137288173 + AluJo SINE Alu 1 252 -60 391 364 49 5 chr6 51991918 51992102 -137287452 + MIR SINE MIR 56 247 -15 2403 68 0 3 chr6 51992666 51992962 -137286592 + AluSx SINE Alu 1 295 -17 345 275 198 52 chr6 51993017 51993042 -137286512 + L2 LINE L2 2694 2714 -599 1352 176 107 8 chr6 51993042 51993304 -137286250 - AluJb SINE Alu -24 288 1 345 275 198 52 chr6 51993304 51993334 -137286220 + L2 LINE L2 2714 2738 -575 1862 122 16 36 chr6 51993334 51993638 -137285916 + AluSx SINE Alu 1 298 -14 345 275 198 52 chr6 51993638 51994098 -137285456 + L2 LINE L2 2738 3313 0 195 42 0 0 chr6 51994368 51994392 -137285162 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 330 26 0 0 chr6 51994391 51994430 -137285124 + (GA)n Simple_repeat Simple_repeat 2 40 0 213 39 0 0 chr6 51995392 51995418 -137284136 + (CA)n Simple_repeat Simple_repeat 2 27 0 487 343 73 4 chr6 51995708 51995941 -137283613 - MIR SINE MIR -6 256 8 332 305 99 0 chr6 51999655 51999796 -137279758 + MIR3 SINE MIR 36 190 -18 1739 216 51 49 chr6 51999944 52000240 -137279314 + L1ME3A LINE L1 5579 5878 -292 1478 158 147 4 chr6 52000240 52000513 -137279041 + AluJo SINE Alu 1 312 0 1739 216 51 49 chr6 52000513 52000786 -137278768 + L1ME3A LINE L1 5878 6149 -21 728 220 12 24 chr6 52001065 52001233 -137278321 + MIR SINE MIR 36 201 -61 963 186 24 0 chr6 52001285 52001452 -137278102 - MLT1A1 LTR MaLR 0 365 195 429 181 12 12 chr6 52001569 52001652 -137277902 + MER20 DNA MER1_type 137 219 0 190 242 65 16 chr6 52001986 52002048 -137277506 - MIR SINE MIR -86 122 58 468 234 18 18 chr6 52002316 52002427 -137277127 - L2 LINE L2 -35 3278 3168 470 274 156 11 chr6 52002429 52002615 -137276939 - MIR SINE MIR -2 260 48 1196 213 28 159 chr6 52002619 52002969 -137276585 + L1M4 LINE L1 3940 4334 -1812 180 77 0 0 chr6 52002969 52002995 -137276559 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2185 128 3 0 chr6 52002997 52003293 -137276261 - AluSx SINE Alu -15 297 1 1196 213 28 159 chr6 52003293 52003395 -137276159 + L1M4 LINE L1 4335 4449 -1697 2175 162 22 6 chr6 52003395 52003754 -137275800 - MLT1A1 LTR MaLR 0 365 1 811 183 11 21 chr6 52003759 52003945 -137275609 + L1MB7 LINE L1 6001 6184 0 1196 213 28 159 chr6 52003945 52004265 -137275289 + L1M4 LINE L1 4453 4631 -1515 2297 114 0 0 chr6 52005246 52005553 -137274001 + AluSc SINE Alu 1 307 -2 2433 102 0 9 chr6 52005555 52005870 -137273684 + AluSx SINE Alu 1 312 0 205 211 0 0 chr6 52006458 52006496 -137273058 - L2 LINE L2 -94 3219 3182 300 182 0 91 chr6 52006876 52006959 -137272595 - LTR33 LTR ERVL 0 521 447 1547 195 125 8 chr6 52006959 52007359 -137272195 - MLT1C LTR MaLR -1 466 20 283 216 60 52 chr6 52007350 52007466 -137272088 - LTR33 LTR ERVL -52 469 353 * 5607 124 16 1 chr6 52008051 52008884 -137270670 - L1MC1 LINE L1 0 6333 5489 1388 173 113 35 chr6 52008935 52009219 -137270335 - AluJo SINE Alu -6 306 1 340 219 0 2 chr6 52009261 52009344 -137270210 + Charlie8 DNA MER1_type 1346 2416 -1 268 296 126 33 chr6 52009640 52009781 -137269773 + MIR SINE MIR 20 178 -68 1146 277 85 8 chr6 52009826 52010202 -137269352 + L2 LINE L2 1781 2185 -1129 987 236 79 18 chr6 52010203 52010483 -137269071 - MLT1C LTR MaLR 0 467 171 392 120 40 0 chr6 52010483 52010558 -137268996 + CT-rich Low_complexity Low_complexity 5 82 0 1562 195 0 18 chr6 52010558 52010830 -137268724 - AluJo SINE Alu -45 267 1 474 160 66 9 chr6 52010831 52010937 -137268617 - MLT1C LTR MaLR -282 185 74 1215 281 96 6 chr6 52010975 52011444 -137268110 + L2 LINE L2 2182 2692 -622 332 333 49 28 chr6 52011607 52011751 -137267803 - L2 LINE L2 0 3272 3126 304 363 68 38 chr6 52012037 52012329 -137267225 + HAL1 LINE L1 162 462 -2045 982 263 129 26 chr6 52012402 52013021 -137266533 + HAL1 LINE L1 589 1271 -1236 492 161 75 0 chr6 52013022 52013115 -137266439 + MLT1G1 LTR MaLR 1 100 -495 2320 104 3 0 chr6 52013159 52013458 -137266096 + AluSp SINE Alu 2 301 -12 483 262 44 61 chr6 52013586 52013815 -137265739 + MLT1G1 LTR MaLR 68 292 -298 275 291 139 26 chr6 52013877 52014028 -137265526 + MLT1G1 LTR MaLR 370 537 -5 436 237 112 12 chr6 52014032 52014201 -137265353 + HAL1 LINE L1 1277 1462 -1045 479 93 0 13 chr6 52014202 52014277 -137265277 + (GGGA)n Simple_repeat Simple_repeat 3 76 0 183 80 0 0 chr6 52014280 52014305 -137265249 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 615 197 82 0 chr6 52014399 52014521 -137265033 + FLAM_C SINE Alu 1 132 -1 301 237 132 18 chr6 52014573 52014687 -137264867 - MLT1J2 LTR MaLR -57 393 267 823 202 62 25 chr6 52014700 52014943 -137264611 - Charlie4 DNA MER1_type -7 1954 1703 2255 126 0 0 chr6 52015025 52015326 -137264228 + AluSg SINE Alu 1 301 -9 1592 148 28 14 chr6 52015533 52015824 -137263730 - Charlie4 DNA MER1_type -1659 302 8 670 287 40 18 chr6 52015851 52016074 -137263480 - MLT1J1 LTR MaLR -212 234 7 309 174 29 14 chr6 52017298 52017367 -137262187 - MLT1I LTR MaLR -22 387 318 405 269 120 14 chr6 52017482 52017649 -137261905 - MLT1J2 LTR MaLR -233 213 16 846 222 15 0 chr6 52017665 52017868 -137261686 + HAL1 LINE L1 1572 1777 -730 486 258 25 80 chr6 52017875 52018236 -137261318 + HAL1 LINE L1 1846 2186 -321 386 235 151 78 chr6 52018287 52018645 -137260909 - MLT1I LTR MaLR 0 409 26 286 209 35 52 chr6 52018650 52018765 -137260789 + HAL1 LINE L1 2271 2383 -124 278 233 58 58 chr6 52018812 52018915 -137260639 + HAL1 LINE L1 2398 2500 -7 198 321 18 0 chr6 52019001 52019057 -137260497 - L3 LINE CR1 -1315 262 206 2074 148 0 3 chr6 52020003 52020301 -137259253 - AluJb SINE Alu -15 297 1 715 191 98 108 chr6 52020313 52020517 -137259037 + MIR SINE MIR 18 219 -43 598 203 8 8 chr6 52021974 52022092 -137257462 + MIR SINE MIR 30 147 -61 2206 171 70 128 chr6 52022495 52023097 -137256457 + MLT1F1 LTR MaLR 1 567 0 2001 123 7 42 chr6 52023614 52023924 -137255630 - AluSx SINE Alu -13 299 1 1926 173 0 3 chr6 52024001 52024302 -137255252 - AluJb SINE Alu -12 300 1 759 217 0 48 chr6 52024355 52024521 -137255033 - MLT1H1 LTR MaLR -6 589 432 479 234 125 47 chr6 52024535 52024727 -137254827 - MER63A DNA MER1_type -3 207 1 901 241 42 45 chr6 52024747 52025033 -137254521 - MLT1H1 LTR MaLR -297 258 1 196 306 24 0 chr6 52025095 52025180 -137254374 + MIR SINE MIR 54 140 -122 575 185 59 0 chr6 52025361 52025480 -137254074 + MER94 DNA DNA 6 131 -3 216 322 55 69 chr6 52025940 52026229 -137253325 + L2 LINE L2 2808 3092 -180 758 193 121 53 chr6 52026247 52026454 -137253100 + MIR SINE MIR 13 233 -29 2349 116 0 0 chr6 52026589 52026900 -137252654 + AluSx SINE Alu 1 311 -1 1612 179 62 48 chr6 52028130 52028488 -137251066 - MLT1A1 LTR MaLR -2 363 1 660 279 64 39 chr6 52028580 52028813 -137250741 + MIR SINE MIR 24 262 0 387 0 0 0 chr6 52030955 52030998 -137248556 + (TG)n Simple_repeat Simple_repeat 1 43 0 211 274 68 0 chr6 52032749 52032822 -137246732 - MIR SINE MIR -80 182 105 959 158 84 65 chr6 52033097 52033312 -137246242 - MER20 DNA MER1_type 0 219 1 236 368 98 25 chr6 52033409 52033613 -137245941 - L2 LINE L2 -66 3206 2988 2155 189 75 36 chr6 52033759 52034292 -137245262 + MER97c DNA MER1_type? 14 567 -523 566 167 0 0 chr6 52034361 52034457 -137245097 - AluY SINE Alu 0 311 216 308 280 91 23 chr6 52034556 52034731 -137244823 + MER97c DNA MER1_type? 904 1090 0 404 290 41 24 chr6 52035042 52035211 -137244343 - MIR3 SINE MIR -34 174 3 308 337 106 26 chr6 52035389 52035692 -137243862 - L2 LINE L2 0 3272 2946 238 316 11 11 chr6 52035979 52036074 -137243480 + CT-rich Low_complexity Low_complexity 3 97 0 266 240 80 0 chr6 52036923 52036998 -137242556 - MIR3 SINE MIR -25 183 103 399 298 44 18 chr6 52037040 52037154 -137242400 - L2 LINE L2 0 3313 3197 348 300 50 0 chr6 52037238 52037358 -137242196 + L2 LINE L2 3139 3264 -8 346 225 28 0 chr6 52037413 52037484 -137242070 - MIR SINE MIR -102 160 88 212 307 0 13 chr6 52037642 52037717 -137241837 + GA-rich Low_complexity Low_complexity 3 76 0 212 125 0 0 chr6 52037719 52037751 -137241803 - MIR SINE MIR -202 60 29 190 278 63 79 chr6 52037829 52037955 -137241599 - L3b LINE CR1 -185 1398 1275 449 265 68 0 chr6 52038276 52038423 -137241131 + MIR3 SINE MIR 38 194 -14 385 330 131 0 chr6 52038666 52038842 -137240712 - MIR SINE MIR -32 230 32 261 0 0 0 chr6 52039057 52039086 -137240468 + (TG)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chr6 52039085 52039109 -137240445 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 227 217 0 0 chr6 52039204 52039250 -137240304 + (TAA)n Simple_repeat Simple_repeat 2 47 0 237 256 11 44 chr6 52039503 52039593 -137239961 + GA-rich Low_complexity Low_complexity 1 87 0 282 282 0 26 chr6 52039689 52039767 -137239787 + L2 LINE L2 2701 2776 -538 415 237 0 10 chr6 52040057 52040154 -137239400 - MIR SINE MIR -147 115 20 267 31 0 0 chr6 52040801 52040833 -137238721 + (TC)n Simple_repeat Simple_repeat 2 33 0 345 24 0 0 chr6 52040833 52040875 -137238679 + (CA)n Simple_repeat Simple_repeat 1 42 0 390 349 76 23 chr6 52041195 52041499 -137238055 + L2 LINE L2 2566 2885 -429 730 264 62 70 chr6 52041654 52041912 -137237642 - MIR SINE MIR -5 257 2 395 170 59 38 chr6 52042229 52042347 -137237207 - MIR SINE MIR -19 243 81 676 230 141 56 chr6 52042349 52042813 -137236741 + MLT1H LTR MaLR 1 593 -2 298 209 39 144 chr6 52042816 52042969 -137236585 - MIR SINE MIR -99 163 27 332 200 0 0 chr6 52043323 52043378 -137236176 + MIR3 SINE MIR 151 205 -3 666 267 26 60 chr6 52043646 52043717 -137235837 + MIR SINE MIR 2 74 -188 2430 90 0 0 chr6 52043717 52044017 -137235537 + AluSc SINE Alu 1 300 -9 666 267 26 60 chr6 52044017 52044211 -137235343 + MIR SINE MIR 74 258 -4 288 309 136 0 chr6 52044755 52044836 -137234718 + MIR SINE MIR 27 118 -144 199 250 222 14 chr6 52044830 52044902 -137234652 - L2 LINE L2 -49 3223 3137 * 1006 212 66 0 chr6 52046193 52046434 -137233120 - MIR SINE MIR -2 260 4 336 48 0 0 chr6 52047124 52047166 -137232388 + (CA)n Simple_repeat Simple_repeat 1 42 0 262 259 86 0 chr6 52047543 52047624 -137231930 + MIR3 SINE MIR 104 191 -17 326 270 67 79 chr6 52048001 52048179 -137231375 - MIR SINE MIR -65 197 22 317 62 21 0 chr6 52048238 52048286 -137231268 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 305 300 110 0 chr6 52048428 52048528 -137231026 - MIR3 SINE MIR -21 187 77 * 2532 236 109 14 chr6 52048511 52049445 -137230109 - L2 LINE L2 -2 3311 2257 231 114 0 0 chr6 52049609 52049644 -137229910 + (CCCTAG)n Simple_repeat Simple_repeat 1 35 0 271 296 130 0 chr6 52050076 52050184 -137229370 - MIR3 SINE MIR -52 156 35 382 240 70 48 chr6 52050232 52050377 -137229177 + MIR SINE MIR 30 177 -68 26 64 0 0 chr6 52051323 52051370 -137228184 + GC_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr6 52051620 52051648 -137227906 + GC_rich Low_complexity Low_complexity 1 28 0 6285 26 1 0 chr6 52151660 52152579 -137126975 + L1PA4 LINE L1 5106 6025 -130 208 367 50 8 chr6 52152795 52152915 -137126639 + L2 LINE L2 3189 3313 0 2119 116 0 19 chr6 52152941 52153294 -137126260 - AluSq SINE Alu 0 347 1 212 191 0 0 chr6 52153294 52153306 -137126248 + T-rich Low_complexity Low_complexity 1 180 0 485 296 86 11 chr6 52153597 52153864 -137125690 + LTR33 LTR ERVL 235 521 0 1423 221 13 60 chr6 52153990 52154371 -137125183 - MLT1A1 LTR MaLR -2 363 1 1462 280 62 4 chr6 52154573 52155077 -137124477 + MLT1F LTR MaLR 10 542 0 26 0 0 0 chr6 52156821 52156847 -137122707 + AT_rich Low_complexity Low_complexity 1 26 0 318 318 9 9 chr6 52157327 52157437 -137122117 + L2 LINE L2 3200 3309 -4 415 299 94 18 chr6 52157769 52157993 -137121561 + MIR SINE MIR 18 258 -4 575 310 17 30 chr6 52158935 52159235 -137120319 - L1M4 LINE L1 -1161 5687 5392 1957 263 68 41 chr6 52159250 52159844 -137119710 + L1ME3 LINE L1 5050 5627 -707 330 26 0 0 chr6 52159844 52159883 -137119671 + (CA)n Simple_repeat Simple_repeat 2 40 0 1957 263 68 41 chr6 52159883 52160376 -137119178 + L1ME3 LINE L1 5627 6334 0 8392 196 51 53 chr6 52161927 52162375 -137117179 - L1M4 LINE L1 -1647 5201 4753 1907 151 10 3 chr6 52162375 52162666 -137116888 - AluSx SINE Alu -19 293 1 8392 196 51 53 chr6 52162666 52164993 -137114561 - L1M4 LINE L1 -2095 4753 2434 2629 208 37 30 chr6 52164986 52165553 -137114001 - L1M4 LINE L1 -6277 572 2 * 1472 236 90 30 chr6 52166292 52166726 -137112828 - MLT1D LTR MaLR 0 505 61 14797 95 6 4 chr6 52166826 52168869 -137110685 - HERVK22 LTR ERVK -2498 4339 2294 396 169 39 0 chr6 52168839 52168916 -137110638 - HERVK22 LTR ERVK -6060 777 698 * 4443 117 26 6 chr6 52169016 52169681 -137109873 - HERVK22 LTR ERVK -6159 678 1 1594 245 17 40 chr6 52169681 52170150 -137109404 - LTR22A LTR ERVK 0 458 1 2808 259 75 12 chr6 52170288 52171235 -137108319 + L1PBa LINE L1 6 1012 -5851 270 190 17 35 chr6 52171256 52171314 -137108240 + L1PBa LINE L1 1093 1149 -5714 8601 220 21 13 chr6 52171496 52174105 -137105449 + L1PBa LINE L1 2046 4775 -2087 194 373 151 16 chr6 52174950 52175202 -137104352 - L2 LINE L2 -359 2955 2670 228 342 116 17 chr6 52175207 52175508 -137104046 - L2 LINE L2 -1113 2201 1871 724 206 25 60 chr6 52175509 52175708 -137103846 - MER20 DNA MER1_type -1 218 27 215 324 7 34 chr6 52175785 52175933 -137103621 - L2 LINE L2 -1497 1817 1674 1002 157 7 0 chr6 52175933 52176086 -137103468 + AluSc SINE Alu 133 286 -23 423 374 77 38 chr6 52176537 52177435 -137102119 - L2 LINE L2 -2014 1300 368 360 0 0 0 chr6 52177658 52177698 -137101856 + (CA)n Simple_repeat Simple_repeat 1 40 0 413 230 68 37 chr6 52177951 52178112 -137101442 - LTR16C LTR ERVL -2 489 324 796 303 107 56 chr6 52178788 52179603 -137099951 + L1ME3 LINE L1 5261 6116 -46 24 67 0 0 chr6 52180205 52180250 -137099304 + AT_rich Low_complexity Low_complexity 1 45 0 26 64 0 0 chr6 52180585 52180632 -137098922 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr6 52181062 52181084 -137098470 + AT_rich Low_complexity Low_complexity 1 22 0 2397 178 33 9 chr6 52181967 52182417 -137097137 - LOR1b LTR ERV1 0 461 1 3926 196 36 3 chr6 52182462 52183207 -137096347 + Tigger7 DNA MER2_type 1 770 -1717 1502 168 144 25 chr6 52183210 52183537 -137096017 + Tigger7 DNA MER2_type 2222 2587 0 186 235 98 0 chr6 52184034 52184085 -137095469 + MIR SINE MIR 84 139 -123 254 276 40 0 chr6 52184286 52184362 -137095192 - L2 LINE L2 -732 2582 2504 2032 306 91 47 chr6 52184485 52185617 -137093937 - L2 LINE L2 -997 2317 1136 203 182 23 0 chr6 52185780 52185824 -137093730 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 288 81 0 0 chr6 52185971 52186008 -137093546 - U2 snRNA snRNA -151 37 1 1512 196 60 23 chr6 52186100 52186447 -137093107 - MLT1B LTR MaLR -1 389 30 215 313 16 16 chr6 52186517 52186581 -137092973 - L2 LINE L2 -215 3057 2994 1007 259 49 26 chr6 52186660 52187116 -137092438 - MER77 LTR ERV1 -5 600 56 241 200 27 27 chr6 52187374 52187449 -137092105 + (TA)n Simple_repeat Simple_repeat 2 76 0 216 224 17 0 chr6 52190037 52190095 -137089459 + (TA)n Simple_repeat Simple_repeat 2 60 0 198 0 0 0 chr6 52190423 52190445 -137089109 + (CTTTG)n Simple_repeat Simple_repeat 3 24 0 12314 168 25 11 chr6 52190701 52191022 -137088532 + L1M1 LINE L1 1458 1773 -5792 2142 135 0 0 chr6 52191022 52191334 -137088220 - AluSx SINE Alu 0 312 1 12314 168 25 11 chr6 52191334 52193870 -137085684 + L1M1 LINE L1 1773 4360 -3205 1711 95 0 0 chr6 52193870 52194091 -137085463 - AluSq SINE Alu -92 221 1 963 187 13 53 chr6 52194117 52194342 -137085212 - AluJo SINE Alu -9 303 88 23 68 0 0 chr6 52194794 52194838 -137084716 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr6 52195013 52195034 -137084520 + AT_rich Low_complexity Low_complexity 1 21 0 821 234 16 16 chr6 52195509 52195697 -137083857 - MER5A DNA MER1_type 0 189 2 202 256 158 24 chr6 52195763 52195845 -137083709 + MIR3 SINE MIR 111 203 -5 2016 153 11 14 chr6 52196294 52196660 -137082894 - HSMAR2 DNA Mariner -10 1292 928 434 167 8 24 chr6 52196782 52196908 -137082646 + GA-rich Low_complexity Low_complexity 2 125 0 180 0 0 0 chr6 52196904 52196924 -137082630 + (CAAAG)n Simple_repeat Simple_repeat 2 21 0 * 658 270 31 13 chr6 52197034 52197260 -137082294 + L1MC4 LINE L1 7687 7916 -126 1758 151 0 34 chr6 52197513 52197853 -137081701 - AluSx SINE Alu 0 330 1 30 27 0 0 chr6 52198153 52198190 -137081364 + AT_rich Low_complexity Low_complexity 1 37 0 292 283 36 48 chr6 52198383 52198549 -137081005 - MIR SINE MIR -17 245 82 310 265 0 51 chr6 52198668 52198766 -137080788 + L1MC4 LINE L1 6611 6703 -1339 309 178 68 14 chr6 52198709 52198782 -137080772 - L1MCa LINE L1 -4358 2068 1992 * 258 310 28 14 chr6 52198801 52198872 -137080682 - L2 LINE L2 0 3272 3201 205 274 32 11 chr6 52198873 52198968 -137080586 + (CATA)n Simple_repeat Simple_repeat 4 100 0 264 100 0 0 chr6 52198968 52199008 -137080546 + (TG)n Simple_repeat Simple_repeat 1 40 0 23 33 0 0 chr6 52200421 52200451 -137079103 + AT_rich Low_complexity Low_complexity 1 30 0 28 48 0 0 chr6 52200929 52200971 -137078583 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr6 52202002 52202038 -137077516 + AT_rich Low_complexity Low_complexity 1 36 0 550 258 86 29 chr6 52202073 52202317 -137077237 + L1ME3A LINE L1 5908 6165 -5 608 254 53 12 chr6 52202480 52202649 -137076905 - MER63A DNA MER1_type -20 190 15 345 354 2 49 chr6 52203147 52203377 -137076177 + MIR SINE MIR 38 256 -6 216 0 0 0 chr6 52203941 52203965 -137075589 + (A)n Simple_repeat Simple_repeat 1 24 0 1416 218 3 24 chr6 52204493 52204791 -137074763 - AluJo SINE Alu -9 293 2 673 302 78 21 chr6 52205401 52205882 -137073672 - L2 LINE L2 -78 3235 2723 266 257 40 0 chr6 52205914 52205988 -137073566 - L1ME3A LINE L1 -17 6153 6077 2053 147 0 0 chr6 52207351 52207644 -137071910 - AluSx SINE Alu -15 297 5 2054 93 13 0 chr6 52208760 52209061 -137070493 - pTR5 LTR ERV1 -2046 392 88 1404 179 3 31 chr6 52209062 52209419 -137070135 - pTR5 LTR ERV1 -1349 1089 743 342 172 65 0 chr6 52209454 52209547 -137070007 + L1ME3A LINE L1 5750 5848 -322 622 319 38 21 chr6 52210387 52210625 -137068929 - MIR SINE MIR -10 252 11 1957 213 83 12 chr6 52210749 52211229 -137068325 - L1MA3 LINE L1 0 6305 5792 249 33 0 0 chr6 52211811 52211841 -137067713 + (TAA)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr6 52212367 52212391 -137067163 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr6 52212426 52212447 -137067107 + (TTA)n Simple_repeat Simple_repeat 2 22 0 244 105 0 0 chr6 52212650 52212688 -137066866 + L1PA13 LINE L1 6115 6152 -11 293 336 41 20 chr6 52213038 52213184 -137066370 - MIR SINE MIR -3 259 111 649 176 206 0 chr6 52213187 52213323 -137066231 + AluSg/x SINE Alu 137 300 -12 251 346 10 10 chr6 52213338 52213439 -137066115 - MIR SINE MIR -155 107 7 251 288 47 82 chr6 52213623 52213793 -137065761 - MER5A DNA MER1_type 0 189 15 246 253 36 12 chr6 52214027 52214110 -137065444 + MIR SINE MIR 77 161 -101 203 254 99 0 chr6 52214885 52214956 -137064598 + MIR SINE MIR 125 202 -60 266 293 88 33 chr6 52214997 52215178 -137064376 - L2 LINE L2 -25 3288 3098 276 323 213 18 chr6 52215254 52215567 -137063987 - L2 LINE L2 -342 2971 2580 182 146 0 24 chr6 52216037 52216078 -137063476 + (GAGAA)n Simple_repeat Simple_repeat 5 44 0 254 267 17 0 chr6 52216123 52216183 -137063371 - MER5A DNA MER1_type -1 188 128 240 59 0 0 chr6 52216220 52216254 -137063300 + (T)n Simple_repeat Simple_repeat 1 34 0 2272 202 23 39 chr6 52218317 52218832 -137060722 - MER67D LTR ERV1 0 514 8 1992 186 25 32 chr6 52219295 52219731 -137059823 - Tigger2a DNA MER2_type -1 433 1 2148 60 3 3 chr6 52220074 52220381 -137059173 - AluY SINE Alu 0 307 1 501 310 87 29 chr6 52220903 52221248 -137058306 + L1ME3A LINE L1 5617 5981 -189 705 241 148 60 chr6 52221314 52221739 -137057815 - MLT1C LTR MaLR -3 464 1 359 167 0 0 chr6 52222073 52222145 -137057409 - L1PB1 LINE L1 0 6151 6080 2213 176 59 5 chr6 52222599 52223003 -137056551 + MSTB LTR MaLR 1 426 0 226 334 0 0 chr6 52223921 52223992 -137055562 + MIR SINE MIR 72 143 -65 611 354 28 0 chr6 52224156 52224368 -137055186 - MIR SINE MIR -28 234 17 827 204 167 34 chr6 52224565 52224888 -137054666 + LOR1b LTR ERV1 96 461 0 2235 23 4 0 chr6 52225313 52225577 -137053977 + L1PA3 LINE L1 5888 6152 -3 295 317 179 0 chr6 52226251 52226396 -137053158 + MIR SINE MIR 87 257 -5 547 257 95 0 chr6 52226942 52227090 -137052464 + MER5A DNA MER1_type 28 189 0 333 258 124 21 chr6 52227108 52227205 -137052349 + MIR SINE MIR 34 140 -122 251 272 0 0 chr6 52228361 52228442 -137051112 + T-rich Low_complexity Low_complexity 1 81 0 254 272 153 78 chr6 52228568 52229420 -137050134 - HAL1 LINE L1 -698 1809 894 503 210 31 49 chr6 52229779 52229941 -137049613 - L1M4 LINE L1 -6370 172 14 368 299 25 61 chr6 52230014 52230211 -137049343 - MLT1G LTR MaLR 0 590 401 24 85 0 0 chr6 52230698 52230757 -137048797 + AT_rich Low_complexity Low_complexity 1 59 0 24 32 0 0 chr6 52230987 52231018 -137048536 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr6 52231673 52231698 -137047856 + AT_rich Low_complexity Low_complexity 1 25 0 351 0 0 0 chr6 52233335 52233374 -137046180 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 57 0 0 chr6 52233695 52233730 -137045824 + AT_rich Low_complexity Low_complexity 1 35 0 292 21 10 104 chr6 52234510 52234606 -137044948 + (TA)n Simple_repeat Simple_repeat 2 88 0 189 121 0 0 chr6 52234599 52234632 -137044922 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 14464 168 50 18 chr6 52234646 52237053 -137042501 + L1MA3 LINE L1 17 2346 -5378 2171 83 0 4 chr6 52237053 52237330 -137042224 + AluY SINE Alu 36 311 0 14464 168 50 18 chr6 52237330 52238576 -137040978 + L1MA3 LINE L1 2346 3551 -4173 2039 150 46 8 chr6 52238576 52238970 -137040584 + L1PA13 LINE L1 5754 6162 -1 14464 168 50 18 chr6 52238970 52240361 -137039193 + L1MA3 LINE L1 3551 4896 -2828 369 0 0 0 chr6 52240361 52240402 -137039152 + (CA)n Simple_repeat Simple_repeat 2 42 0 14464 168 50 18 chr6 52240402 52240643 -137038911 + L1MA3 LINE L1 4896 5128 -2596 252 77 0 0 chr6 52240643 52240682 -137038872 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 14464 168 50 18 chr6 52240682 52242488 -137037066 + L1MA3 LINE L1 5128 7723 -1 3539 113 35 4 chr6 52242545 52243095 -137036459 + Tigger4(Zombi) DNA MER2_type 2164 2730 -1 964 211 65 58 chr6 52244581 52245010 -137034544 - MER57A-int LTR ERV1 -388 1398 1044 2227 118 0 0 chr6 52245110 52245415 -137034139 + AluSg SINE Alu 4 308 -2 682 266 24 39 chr6 52245749 52246012 -137033542 - MER57A-int LTR ERV1 -7238 299 3 496 253 109 99 chr6 52246020 52246415 -137033139 - MER57A LTR ERV1 -4 399 1 255 93 0 0 chr6 52246607 52246650 -137032904 + (CA)n Simple_repeat Simple_repeat 2 44 0 442 258 12 90 chr6 52247458 52247625 -137031929 + MIR SINE MIR 2 155 -107 459 0 0 0 chr6 52248212 52248263 -137031291 + (TG)n Simple_repeat Simple_repeat 2 52 0 437 0 19 0 chr6 52248561 52248614 -137030940 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 21 36 0 0 chr6 52248772 52248800 -137030754 + AT_rich Low_complexity Low_complexity 1 28 0 4619 114 16 0 chr6 52251571 52252255 -137027299 - L1PA11 LINE L1 0 6174 5480 564 149 9 35 chr6 52254218 52254332 -137025222 - L1MA10 LINE L1 0 6334 6224 542 318 88 14 chr6 52256485 52256702 -137022852 - MIR SINE MIR -14 248 16 279 338 93 20 chr6 52259759 52259910 -137019644 + MIR3 SINE MIR 47 208 0 508 263 92 7 chr6 52360406 52360558 -136918996 + MIR SINE MIR 78 242 -20 1109 132 0 28 chr6 52360730 52360912 -136918642 + FRAM SINE Alu 1 176 0 186 133 0 0 chr6 52360959 52360989 -136918565 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 364 310 45 13 chr6 52361158 52361313 -136918241 + MER5A DNA MER1_type 28 187 -2 1793 200 142 7 chr6 52363348 52363758 -136915796 + MLT1C LTR MaLR 1 465 -2 2265 92 0 7 chr6 52363833 52364137 -136915417 + AluSx SINE Alu 1 302 -10 1641 155 46 36 chr6 52364548 52364753 -136914801 - AluJo SINE Alu -6 306 96 1916 125 3 47 chr6 52364753 52365072 -136914482 + AluSx SINE Alu 1 305 -7 1641 155 46 36 chr6 52365072 52365169 -136914385 - AluJo SINE Alu -216 96 1 306 246 40 63 chr6 52365478 52365604 -136913950 + MIR SINE MIR 80 202 -60 1613 168 64 15 chr6 52365725 52366053 -136913501 + MER58D DNA MER1_type 1 344 -42 673 260 53 0 chr6 52366067 52366217 -136913337 - MER58A DNA MER1_type 0 158 1 491 249 60 38 chr6 52366377 52366562 -136912992 + MLT1K LTR MaLR 376 564 -24 369 325 86 12 chr6 52366578 52366741 -136912813 - L2 LINE L2 -189 3083 2909 807 175 0 0 chr6 52366903 52367029 -136912525 - AluSq/x SINE Alu -187 126 1 535 316 143 34 chr6 52367058 52367650 -136911904 - L2 LINE L2 -619 2695 2030 1486 249 95 11 chr6 52367650 52368103 -136911451 + LTR16C LTR ERVL 1 491 0 535 316 143 34 chr6 52368103 52368133 -136911421 - L2 LINE L2 -1284 2030 2005 892 157 7 0 chr6 52368311 52368458 -136911096 + FRAM SINE Alu 23 170 -6 357 308 23 15 chr6 52368879 52369012 -136910542 + MIR SINE MIR 30 163 -99 1463 278 58 2 chr6 52369012 52369411 -136910143 - LTR16C LTR ERVL 0 491 71 228 306 14 0 chr6 52369468 52369540 -136910014 + MIR SINE MIR 161 233 -29 185 295 205 0 chr6 52369930 52370008 -136909546 + MIR SINE MIR 166 259 -3 287 339 108 8 chr6 52370795 52370925 -136908629 - MIR SINE MIR -79 183 41 1412 188 77 3 chr6 52370970 52371257 -136908297 + AluJo SINE Alu 1 308 -4 200 260 0 27 chr6 52372059 52372132 -136907422 + GA-rich Low_complexity Low_complexity 1 71 0 1307 260 94 20 chr6 52372624 52373070 -136906484 - L1ME3A LINE L1 -53 6117 5639 180 0 0 0 chr6 52373070 52373090 -136906464 + (GAGTG)n Simple_repeat Simple_repeat 2 21 0 2291 87 3 13 chr6 52373115 52373425 -136906129 - AluSp SINE Alu -6 307 1 1977 154 0 0 chr6 52373613 52373924 -136905630 + AluSx SINE Alu 1 311 -1 338 256 12 0 chr6 52374109 52374191 -136905363 + MIR SINE MIR 41 123 -85 404 244 35 17 chr6 52374466 52374581 -136904973 - MIR SINE MIR -131 131 15 705 179 14 21 chr6 52375445 52375585 -136903969 + MIR SINE MIR 52 190 -72 197 105 0 26 chr6 52377106 52377144 -136902410 + (CCCCCT)n Simple_repeat Simple_repeat 4 40 0 22 0 0 0 chr6 52377144 52377166 -136902388 + GC_rich Low_complexity Low_complexity 1 22 0 40 87 0 0 chr6 52377242 52377345 -136902209 + GC_rich Low_complexity Low_complexity 1 103 0 189 0 0 0 chr6 52379124 52379145 -136900409 + (T)n Simple_repeat Simple_repeat 1 21 0 205 256 12 81 chr6 52379884 52379970 -136899584 - L2 LINE L2 0 3313 3234 512 288 0 4 chr6 52380727 52380860 -136898694 - MIR SINE MIR -62 146 32 301 289 0 48 chr6 52383175 52383279 -136896275 + MIR3 SINE MIR 57 155 -53 380 255 20 74 chr6 52384351 52384500 -136895054 - MIR SINE MIR -38 224 84 571 242 214 0 chr6 52384609 52384791 -136894763 + MER102b DNA MER1_type 113 333 -8 2213 104 0 0 chr6 52384877 52385174 -136894380 + AluSx SINE Alu 1 297 -15 1830 107 28 21 chr6 52385274 52385564 -136893990 + AluJb SINE Alu 5 296 -16 280 273 30 53 chr6 52386425 52386557 -136892997 + MIR SINE MIR 17 145 -63 2356 71 0 3 chr6 52386625 52386922 -136892632 - AluY SINE Alu -14 297 2 247 152 0 0 chr6 52386982 52387028 -136892526 + L2 LINE L2 3008 3053 -219 575 223 17 74 chr6 52387106 52387281 -136892273 - MER5B DNA MER1_type 0 178 14 744 254 128 65 chr6 52387606 52388145 -136891409 + L1ME4a LINE L1 5548 6120 -1 389 278 13 40 chr6 52388758 52388909 -136890645 - MIR SINE MIR -47 215 69 290 309 163 44 chr6 52389333 52389676 -136889878 + L2 LINE L2 2930 3313 0 772 189 37 12 chr6 52390088 52390252 -136889302 + MER5A DNA MER1_type 22 189 0 207 171 158 79 chr6 52390367 52390443 -136889111 - MIR3 SINE MIR -41 167 86 731 138 0 0 chr6 52390451 52390560 -136888994 + FLAM_C SINE Alu 2 110 -33 261 248 226 36 chr6 52391696 52391833 -136887721 - MIR3 SINE MIR -34 174 12 275 233 14 14 chr6 52393897 52393970 -136885584 + MIR3 SINE MIR 82 154 -54 707 249 28 21 chr6 52394065 52394279 -136885275 - MER8 DNA MER2_type -3 342 6 1566 139 132 0 chr6 52394472 52394738 -136884816 + AluSx SINE Alu 2 302 -10 22 0 0 0 chr6 52394738 52394760 -136884794 + AT_rich Low_complexity Low_complexity 1 22 0 282 258 79 11 chr6 52394921 52395010 -136884544 + MIR SINE MIR 89 183 -79 1988 113 0 24 chr6 52395370 52395684 -136883870 + AluSx SINE Alu 1 307 0 272 289 64 58 chr6 52397387 52397543 -136882011 + MIR3 SINE MIR 5 161 -47 229 301 71 44 chr6 52398555 52398668 -136880886 - MIR SINE MIR -44 218 103 181 255 21 0 chr6 52398786 52398833 -136880721 + L2 LINE L2 3225 3272 0 348 24 0 0 chr6 52400379 52400420 -136879134 + (CA)n Simple_repeat Simple_repeat 2 42 0 270 330 224 1 chr6 52402317 52402596 -136876958 + L2 LINE L2 2714 3058 -255 180 0 0 0 chr6 52402605 52402625 -136876929 + (CAGC)n Simple_repeat Simple_repeat 2 21 0 185 239 196 101 chr6 52402654 52402792 -136876762 + L2 LINE L2 3159 3309 -4 239 275 165 28 chr6 52403131 52403240 -136876314 + MIR3 SINE MIR 45 168 -40 364 206 0 0 chr6 52403246 52403314 -136876240 + MER112 DNA MER1_type 193 260 0 585 332 58 4 chr6 52403928 52404154 -136875400 - MIR SINE MIR -1 261 24 361 234 184 32 chr6 52404616 52404774 -136874780 + MIR SINE MIR 63 244 -18 404 247 77 127 chr6 52405083 52405246 -136874308 + L2 LINE L2 2971 3115 -157 2070 106 0 0 chr6 52405246 52405567 -136873987 - AluY SINE Alu 0 321 1 404 247 77 127 chr6 52405567 52405702 -136873852 + L2 LINE L2 3115 3255 -17 511 259 74 0 chr6 52407004 52407139 -136872415 - MIR SINE MIR -71 191 47 862 259 67 6 chr6 52407714 52407956 -136871598 + MIR SINE MIR 5 259 -3 195 69 0 0 chr6 52410067 52410096 -136869458 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 879 193 94 14 chr6 52410124 52410336 -136869218 - MIR SINE MIR -2 260 32 1909 82 12 103 chr6 52410344 52410675 -136868879 - AluSp SINE Alu -12 301 1 202 396 49 14 chr6 52412162 52412306 -136867248 - L3b LINE CR1 -125 1458 1310 659 201 6 61 chr6 52412517 52412681 -136866873 + MIR SINE MIR 93 247 -15 223 348 87 0 chr6 52413874 52413989 -136865565 - L2 LINE L2 -16 3297 3173 413 300 41 24 chr6 52414210 52414380 -136865174 - MIR3 SINE MIR -7 201 29 729 255 72 10 chr6 52414761 52414969 -136864585 - MIR SINE MIR -1 261 41 240 143 0 0 chr6 52417076 52417118 -136862436 + (CGTG)n Simple_repeat Simple_repeat 2 43 0 853 165 160 5 chr6 52419297 52419491 -136860063 - MIR SINE MIR -2 260 37 296 317 81 12 chr6 52425685 52425846 -136853708 - MIR3 SINE MIR -35 173 2 1979 144 6 10 chr6 52425854 52426203 -136853351 - AluSq SINE Alu 0 348 1 2126 113 0 0 chr6 52426205 52426497 -136853057 - AluSx SINE Alu -20 292 1 380 280 13 39 chr6 52428378 52428507 -136851047 + CT-rich Low_complexity Low_complexity 1 132 -362 2061 119 7 10 chr6 52428507 52428817 -136850737 - AluSx SINE Alu -3 309 1 380 280 13 39 chr6 52428817 52428886 -136850668 + CT-rich Low_complexity Low_complexity 132 494 0 236 247 0 24 chr6 52430127 52430212 -136849342 + C-rich Low_complexity Low_complexity 3 85 0 2316 85 0 10 chr6 52431768 52432075 -136847479 - AluSp SINE Alu -9 304 1 187 359 47 9 chr6 52432882 52432988 -136846566 - L3b LINE CR1 -186 1397 1288 642 162 81 27 chr6 52433667 52433815 -136845739 - MIR SINE MIR 0 262 107 725 245 55 4 chr6 52434846 52435020 -136844534 + MIR SINE MIR 35 223 -39 2738 26 0 0 chr6 52435020 52435333 -136844221 + AluYb8 SINE Alu 1 313 -5 725 245 55 4 chr6 52435333 52435374 -136844180 + MIR SINE MIR 223 260 -2 2486 47 0 0 chr6 52435656 52435955 -136843599 + AluY SINE Alu 1 299 -12 249 294 24 0 chr6 52436735 52436820 -136842734 + L1MC4a LINE L1 5740 5826 -344 330 295 10 83 chr6 52436851 52437044 -136842510 + L1MC4a LINE L1 5872 6050 -1758 246 302 31 0 chr6 52437074 52437170 -136842384 + L1MC5 LINE L1 7833 7931 -30 1824 108 45 0 chr6 52437177 52437535 -136842019 + AluSx SINE Alu 1 370 0 194 328 35 55 chr6 52437850 52437959 -136841595 - L2 LINE L2 -1366 1948 1843 2286 116 18 18 chr6 52437959 52438296 -136841258 - MER1B DNA MER1_type 0 337 1 194 328 35 55 chr6 52438296 52438387 -136841167 - L2 LINE L2 -1471 1843 1752 1573 127 131 28 chr6 52438509 52438792 -136840762 + AluSx SINE Alu 1 312 0 237 383 9 17 chr6 52439511 52439626 -136839928 - L2 LINE L2 -3 3310 3197 1277 100 20 45 chr6 52439658 52439858 -136839696 + AluSq SINE Alu 3 197 -116 29 0 0 0 chr6 52439885 52439914 -136839640 + AT_rich Low_complexity Low_complexity 1 29 0 287 336 47 0 chr6 52440167 52440274 -136839280 - L2 LINE L2 -2 3270 3159 285 330 107 52 chr6 52440554 52440667 -136838887 - L2 LINE L2 -463 2851 2746 2104 113 0 3 chr6 52440667 52441002 -136838552 + AluSx SINE Alu 1 312 0 285 330 107 52 chr6 52441002 52441404 -136838150 - L2 LINE L2 -568 2746 2308 1141 235 90 101 chr6 52441417 52441705 -136837849 + HAL1 LINE L1 11 301 -2206 2218 121 0 0 chr6 52441705 52442010 -136837544 + AluSx SINE Alu 1 305 -7 2116 151 49 0 chr6 52442018 52442383 -136837171 + L1MC1 LINE L1 5938 6320 -13 2187 101 0 0 chr6 52442387 52442673 -136836881 - AluSx SINE Alu -22 290 5 1141 235 90 101 chr6 52442673 52442914 -136836640 + HAL1 LINE L1 311 548 -1959 2716 258 179 30 chr6 52442946 52443219 -136836335 + HAL1 LINE L1 766 997 -1510 2825 13 0 0 chr6 52443219 52443536 -136836018 + AluYb8 SINE Alu 1 317 -1 2716 258 179 30 chr6 52443536 52444741 -136834813 + HAL1 LINE L1 997 2465 -42 305 324 103 0 chr6 52444767 52444912 -136834642 + L2 LINE L2 3109 3268 -4 * 409 221 74 33 chr6 52444908 52445030 -136834524 - MIR3 SINE MIR -8 200 74 233 276 52 0 chr6 52446071 52446129 -136833425 + MIR SINE MIR 107 167 -95 856 141 0 0 chr6 52446129 52446271 -136833283 + L1MA5 LINE L1 6159 6300 0 33 25 0 0 chr6 52446437 52446477 -136833077 + AT_rich Low_complexity Low_complexity 1 40 0 6308 35 21 8 chr6 52446603 52447369 -136832185 + SVA Other Other 609 1384 -2 1909 134 10 10 chr6 52447373 52447682 -136831872 + AluSx SINE Alu 1 312 0 2309 88 0 0 chr6 52447908 52448216 -136831338 + AluSx SINE Alu 1 308 -4 825 255 106 15 chr6 52448237 52448573 -136830981 - MLT1H LTR MaLR -216 379 4 344 253 11 11 chr6 52448717 52448812 -136830742 - MER113 DNA MER1_type? -114 407 313 1221 193 50 82 chr6 52449305 52449540 -136830014 - Zaphod DNA AcHobo -4 4027 3786 1789 155 0 4 chr6 52449540 52449869 -136829685 - AluSx SINE Alu 0 333 6 1221 193 50 82 chr6 52449869 52450273 -136829281 - Zaphod DNA AcHobo -245 3786 802 267 170 0 0 chr6 52450306 52450353 -136829201 - L1M4 LINE L1 -1389 4757 4711 649 192 67 0 chr6 52450355 52450475 -136829079 - FLAM_C SINE Alu -14 129 2 397 242 5 67 chr6 52450476 52450683 -136828871 - L1MEc LINE L1 -4623 1957 1730 812 134 55 0 chr6 52450734 52450861 -136828693 - AluJb SINE Alu -177 135 2 887 257 100 80 chr6 52450864 52451005 -136828549 - L1MEc LINE L1 -4831 1709 1572 1697 173 4 0 chr6 52451005 52451283 -136828271 - AluSx SINE Alu -32 280 2 887 257 100 80 chr6 52451283 52451764 -136827790 - L1MEc LINE L1 -4968 1572 1078 206 31 0 31 chr6 52451764 52451796 -136827758 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1342 218 6 3 chr6 52451797 52452114 -136827440 - L1M4 LINE L1 -2136 4010 3693 * 2471 268 53 8 chr6 52452111 52452880 -136826674 - L1MEc LINE L1 -5584 1137 334 245 292 15 0 chr6 52452899 52452964 -136826590 - MER115 DNA AcHobo -626 67 2 634 265 11 37 chr6 52452965 52453154 -136826400 + MIR SINE MIR 76 259 -3 2050 87 45 0 chr6 52453289 52453577 -136825977 + AluSp SINE Alu 1 301 -12 205 362 5 36 chr6 52453602 52453826 -136825728 + L2 LINE L2 1605 1821 -1493 2296 91 3 0 chr6 52453902 52454209 -136825345 - AluSq SINE Alu -5 308 1 2132 111 3 13 chr6 52454500 52454807 -136824747 - AluSx SINE Alu -8 304 1 2184 92 10 0 chr6 52454814 52455108 -136824446 - AluSc SINE Alu -12 297 1 819 196 75 5 chr6 52455191 52455405 -136824149 - L1MB8 LINE L1 0 6178 5950 741 199 2 24 chr6 52455441 52455608 -136823946 - L1MA10 LINE L1 0 6305 6008 212 292 108 0 chr6 52456111 52456176 -136823378 + L2 LINE L2 3236 3307 -6 598 299 23 11 chr6 52456269 52456443 -136823111 + MIR SINE MIR 16 191 -71 216 280 57 95 chr6 52456452 52456770 -136822784 + L2 LINE L2 2915 3313 0 819 262 130 47 chr6 52457258 52457533 -136822021 - MLT1D LTR MaLR 0 505 181 2330 73 0 3 chr6 52457533 52457835 -136821719 - AluY SINE Alu -9 302 2 819 262 130 47 chr6 52457835 52457983 -136821571 - MLT1D LTR MaLR -324 181 47 240 357 0 0 chr6 52458085 52458183 -136821371 - MIR SINE MIR -2 260 163 233 286 52 0 chr6 52458184 52458261 -136821293 + MLT1F1 LTR MaLR 67 147 -420 2746 161 47 25 chr6 52458262 52458370 -136821184 + L1MC3 LINE L1 7214 7318 -467 1702 104 130 4 chr6 52458370 52458639 -136820915 - AluSg1 SINE Alu -6 303 1 2746 161 47 25 chr6 52458639 52459089 -136820465 + L1MC3 LINE L1 7318 7784 -1 612 194 188 6 chr6 52459089 52459127 -136820427 - MIR SINE MIR -54 208 178 2262 99 0 0 chr6 52459127 52459431 -136820123 + AluSg SINE Alu 1 304 -6 612 194 188 6 chr6 52459431 52459562 -136819992 - MIR SINE MIR -84 178 8 1245 123 17 89 chr6 52459771 52460006 -136819548 + MER20 DNA MER1_type 1 218 -1 227 292 42 14 chr6 52460506 52460578 -136818976 + MIR3 SINE MIR 81 154 -54 1578 139 45 38 chr6 52460580 52460846 -136818708 + AluJb SINE Alu 14 281 -31 294 268 81 71 chr6 52460883 52461081 -136818473 - L2 LINE L2 -16 3297 3098 303 339 0 8 chr6 52461517 52461644 -136817910 + LTR33A LTR ERVL 398 523 0 2036 83 43 13 chr6 52462048 52462350 -136817204 + AluY SINE Alu 1 311 0 1621 190 56 95 chr6 52462806 52462988 -136816566 + MLT1C LTR MaLR 1 189 -278 1920 155 0 7 chr6 52462988 52463284 -136816270 + AluSx SINE Alu 2 295 -17 1621 190 56 95 chr6 52463284 52463585 -136815969 + MLT1C LTR MaLR 189 465 -2 584 153 46 0 chr6 52463588 52463719 -136815835 + L1MB4 LINE L1 6005 6141 -39 691 200 100 0 chr6 52463719 52463819 -136815735 + AluJo SINE Alu 21 138 -174 204 40 0 0 chr6 52463819 52463844 -136815710 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 691 200 100 0 chr6 52463844 52463873 -136815681 + AluJo SINE Alu 138 163 -149 280 323 25 63 chr6 52464030 52464188 -136815366 - MIR3 SINE MIR -55 153 2 517 225 120 42 chr6 52464355 52464550 -136815004 + MIR SINE MIR 40 250 -12 347 314 25 8 chr6 52465156 52465277 -136814277 + MIR SINE MIR 20 142 -66 781 229 219 26 chr6 52465280 52465721 -136813833 - L2 LINE L2 -16 3297 2754 1233 201 73 85 chr6 52465870 52466216 -136813338 + MER96B DNA MER1_type 1 343 -74 1541 154 119 0 chr6 52466216 52466476 -136813078 + AluSx SINE Alu 3 293 -19 1233 201 73 85 chr6 52466476 52466551 -136813003 + MER96B DNA MER1_type 343 417 0 181 296 34 45 chr6 52466571 52466659 -136812895 - MIR SINE MIR -84 124 38 455 202 0 28 chr6 52466712 52466821 -136812733 - L1ME3A LINE L1 0 6170 6065 340 266 18 18 chr6 52468541 52468650 -136810904 + GA-rich Low_complexity Low_complexity 3 111 0 288 53 0 0 chr6 52469249 52469287 -136810267 + (CA)n Simple_repeat Simple_repeat 2 39 0 215 269 15 0 chr6 52469962 52470029 -136809525 + MIR SINE MIR 66 133 -75 279 297 9 27 chr6 52470378 52470489 -136809065 + CT-rich Low_complexity Low_complexity 2 110 0 252 350 67 17 chr6 52471519 52471699 -136807855 - L2 LINE L2 -218 3054 2866 382 242 99 82 chr6 52472318 52472500 -136807054 - MER91A DNA MER1_type -10 186 2 352 330 41 78 chr6 52473411 52473681 -136805873 + L2 LINE L2 2997 3256 -16 681 101 0 0 chr6 52473695 52473794 -136805760 + (GGAA)n Simple_repeat Simple_repeat 4 102 0 209 156 0 22 chr6 52473840 52473885 -136805669 + GA-rich Low_complexity Low_complexity 2 45 0 263 247 27 0 chr6 52474846 52474919 -136804635 + CT-rich Low_complexity Low_complexity 3 77 0 203 200 0 18 chr6 52474974 52475029 -136804525 + (TCTCTG)n Simple_repeat Simple_repeat 6 59 0 234 289 6 46 chr6 52475069 52475242 -136804312 + CT-rich Low_complexity Low_complexity 1 166 0 208 229 0 21 chr6 52475416 52475464 -136804090 + CT-rich Low_complexity Low_complexity 1 47 0 247 208 0 52 chr6 52475885 52475962 -136803592 + CT-rich Low_complexity Low_complexity 5 77 0 262 252 19 68 chr6 52477049 52477152 -136802402 - MIR SINE MIR -55 207 110 453 219 98 85 chr6 52477828 52477947 -136801607 + MIR SINE MIR 70 193 -69 2288 54 3 7 chr6 52477947 52478242 -136801312 + AluY SINE Alu 16 309 -2 453 219 98 85 chr6 52478242 52478286 -136801268 + MIR SINE MIR 193 235 -27 279 160 0 9 chr6 52478378 52478443 -136801111 + MIR SINE MIR 49 111 -97 447 156 0 62 chr6 52478443 52478539 -136801015 + MIR SINE MIR 65 154 -108 413 267 145 8 chr6 52479564 52479695 -136799859 + MIR3 SINE MIR 24 172 -36 387 303 123 6 chr6 52480060 52480222 -136799332 + MER5A DNA MER1_type 5 185 -4 2322 100 0 0 chr6 52480736 52481045 -136798509 - AluSx SINE Alu -3 309 1 1654 108 116 25 chr6 52481093 52481370 -136798184 + AluSq SINE Alu 1 302 -11 304 334 143 12 chr6 52481540 52481831 -136797723 - L2 LINE L2 -213 3059 2672 271 265 29 0 chr6 52481978 52482046 -136797508 + MIR SINE MIR 21 90 -172 1041 264 111 23 chr6 52482054 52482734 -136796820 - L2 LINE L2 -1 3312 2596 2286 96 0 13 chr6 52482776 52483089 -136796465 - AluSq SINE Alu -4 309 1 601 224 34 7 chr6 52483090 52483237 -136796317 + MIR SINE MIR 107 257 -5 192 227 23 0 chr6 52483294 52483338 -136796216 + MIR SINE MIR 101 145 -117 204 309 0 15 chr6 52484304 52484372 -136795182 + G-rich Low_complexity Low_complexity 1 67 0 281 319 96 0 chr6 52485666 52485801 -136793753 - L1MC4a LINE L1 -1834 5974 5827 479 121 0 11 chr6 52486358 52486449 -136793105 + (CA)n Simple_repeat Simple_repeat 1 90 0 191 157 20 0 chr6 52486512 52486563 -136792991 + (CA)n Simple_repeat Simple_repeat 1 52 0 350 286 73 32 chr6 52488010 52488258 -136791296 - MLT1K LTR MaLR -321 267 10 207 386 130 0 chr6 52488347 52488554 -136791000 + L3 LINE CR1 1195 1428 -149 650 287 80 56 chr6 52489433 52489719 -136789835 - MLT1L LTR MaLR 0 615 315 2187 105 16 3 chr6 52489719 52490025 -136789529 + AluSx SINE Alu 1 310 -2 650 287 80 56 chr6 52490025 52490144 -136789410 - MLT1L LTR MaLR -300 315 200 511 278 25 6 chr6 52490144 52490383 -136789171 - LTR16C LTR ERVL -2 489 151 813 222 37 46 chr6 52490734 52490832 -136788722 - MLT1J LTR MaLR -296 215 118 1987 117 28 79 chr6 52490832 52491224 -136788330 - THE1C LTR MaLR 0 375 4 813 222 37 46 chr6 52491224 52491341 -136788213 - MLT1J LTR MaLR -393 118 2 783 270 91 51 chr6 52491341 52491362 -136788192 + MLT1L LTR MaLR 22 41 -547 1549 184 54 0 chr6 52491362 52491662 -136787892 - AluJb SINE Alu 0 312 1 783 270 91 51 chr6 52491662 52492174 -136787380 + MLT1L LTR MaLR 41 588 0 361 274 84 119 chr6 52492274 52492785 -136786769 - MLT1K LTR MaLR -24 564 72 2330 93 0 0 chr6 52492877 52493179 -136786375 - AluSq SINE Alu -11 302 1 1231 208 91 124 chr6 52493439 52493481 -136786073 - LTR33A LTR ERVL -2 521 479 432 0 0 0 chr6 52493481 52493529 -136786025 + (TG)n Simple_repeat Simple_repeat 1 48 0 1231 208 91 124 chr6 52493529 52494025 -136785529 - LTR33A LTR ERVL -44 479 1 1291 210 60 9 chr6 52494062 52494395 -136785159 + MLT1A1 LTR MaLR 14 363 -2 832 222 12 57 chr6 52494780 52494841 -136784713 + L1ME1 LINE L1 2923 2985 -3161 2099 121 0 0 chr6 52494841 52495162 -136784392 + AluSx SINE Alu 1 321 0 832 222 12 57 chr6 52495162 52495433 -136784121 + L1ME1 LINE L1 2985 3241 -2905 2465 205 77 36 chr6 52495457 52495872 -136783682 + L1ME1 LINE L1 4382 4779 -1367 2072 115 0 47 chr6 52495872 52496055 -136783499 - AluSx SINE Alu -6 306 116 297 0 0 0 chr6 52496055 52496088 -136783466 + (TA)n Simple_repeat Simple_repeat 2 34 0 2204 98 0 28 chr6 52496088 52496405 -136783149 - AluSx SINE Alu -4 308 1 2072 115 0 47 chr6 52496405 52496541 -136783013 - AluSx SINE Alu -194 118 1 2465 205 77 36 chr6 52496541 52496949 -136782605 + L1ME1 LINE L1 4779 5238 -908 267 104 0 0 chr6 52497556 52497604 -136781950 + (ATG)n Simple_repeat Simple_repeat 3 50 0 21 57 0 0 chr6 52498127 52498162 -136781392 + AT_rich Low_complexity Low_complexity 1 35 0 525 235 104 14 chr6 52498163 52498384 -136781170 + MLT1L LTR MaLR 371 611 -4 3338 192 29 60 chr6 52498472 52498808 -136780746 + L1ME1 LINE L1 5239 5584 -582 2260 80 7 17 chr6 52498808 52499110 -136780444 - AluSc SINE Alu -10 299 1 3338 192 29 60 chr6 52499110 52499726 -136779828 + L1ME1 LINE L1 5584 6161 -5 4660 104 11 1 chr6 52499805 52500338 -136779216 - L1PB1 LINE L1 -4 6147 5603 1964 132 0 3 chr6 52500338 52500679 -136778875 - AluSg SINE Alu 0 310 1 4660 104 11 1 chr6 52500679 52500898 -136778656 - L1PB1 LINE L1 -548 5603 5388 308 281 0 12 chr6 52500976 52501058 -136778496 - L1ME LINE L1 -402 5719 5639 414 241 28 71 chr6 52501064 52501205 -136778349 + MIR SINE MIR 102 236 -26 203 316 25 0 chr6 52501857 52501936 -136777618 + L2 LINE L2 3183 3263 -9 2455 67 6 3 chr6 52502713 52503025 -136776529 + AluSp SINE Alu 1 313 0 194 306 73 40 chr6 52503874 52503998 -136775556 - MIR SINE MIR -65 143 16 1019 203 11 4 chr6 52504133 52504346 -136775208 + MIR SINE MIR 15 224 -38 363 339 8 0 chr6 52504701 52504828 -136774726 - MER94 DNA DNA -4 130 3 332 318 15 48 chr6 52504857 52505079 -136774475 - MIR SINE MIR -48 214 3 577 304 25 0 chr6 52505886 52506047 -136773507 + MIR SINE MIR 86 250 -12 302 235 0 35 chr6 52506055 52506140 -136773414 + L2 LINE L2 3003 3084 -188 1053 159 88 22 chr6 52506214 52506441 -136773113 - MIR SINE MIR -9 253 12 486 285 98 0 chr6 52507177 52507343 -136772211 + MIR SINE MIR 38 218 -44 298 292 0 32 chr6 52507358 52507512 -136772042 + (TG)n Simple_repeat Simple_repeat 1 149 0 484 320 125 0 chr6 52508287 52508487 -136771067 - MIR SINE MIR -8 254 30 1831 154 3 0 chr6 52508498 52508783 -136770771 + AluJo SINE Alu 15 300 -12 184 312 64 0 chr6 52508885 52508994 -136770560 + L2 LINE L2 2862 2977 -337 294 264 149 34 chr6 52509078 52509226 -136770328 + L2 LINE L2 3106 3270 -2 220 325 60 0 chr6 52509297 52509380 -136770174 - MIR3 SINE MIR -19 189 102 203 171 0 24 chr6 52509417 52509458 -136770096 + L2 LINE L2 3228 3267 -5 213 309 48 0 chr6 52509757 52509841 -136769713 + MIR SINE MIR 61 148 -60 24 0 0 0 chr6 52510166 52510190 -136769364 + AT_rich Low_complexity Low_complexity 1 24 0 1397 219 20 27 chr6 52511223 52511520 -136768034 - AluJo SINE Alu -17 295 1 2267 83 0 20 chr6 52511549 52511851 -136767703 + AluSq SINE Alu 1 296 -17 2295 104 3 0 chr6 52511851 52512159 -136767395 + AluSx SINE Alu 1 309 -3 189 107 0 0 chr6 52512653 52512681 -136766873 + (T)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr6 52513243 52513265 -136766289 + AT_rich Low_complexity Low_complexity 1 22 0 617 218 21 90 chr6 52515406 52515640 -136763914 - MER112 DNA MER1_type 0 260 43 574 224 27 55 chr6 52515810 52515993 -136763561 + MLT1I LTR MaLR 1 178 -231 2002 124 0 17 chr6 52516676 52516974 -136762580 - AluSx SINE Alu -6 306 14 228 178 0 44 chr6 52517993 52518038 -136761516 + polypurine Low_complexity Low_complexity 4 46 0 267 313 74 57 chr6 52518378 52518554 -136761000 - L2 LINE L2 -86 3186 3008 404 242 170 32 chr6 52519203 52519386 -136760168 - MIR SINE MIR -40 168 1 298 263 63 0 chr6 52520059 52520154 -136759400 - MIR3 SINE MIR -24 184 84 2286 106 3 0 chr6 52520290 52520601 -136758953 - AluSx SINE Alu 0 312 1 267 31 0 0 chr6 52521252 52521284 -136758270 + (CTG)n Simple_repeat Simple_repeat 3 34 0 447 252 27 0 chr6 52521502 52521613 -136757941 - MIR SINE MIR -65 143 30 1495 265 52 37 chr6 52521633 52522502 -136757052 + L2 LINE L2 2420 3313 0 523 316 7 13 chr6 52522778 52522930 -136756624 + MIR3 SINE MIR 55 205 -3 609 249 99 25 chr6 52523014 52523215 -136756339 + MIR SINE MIR 2 217 -45 598 261 152 14 chr6 52523453 52523664 -136755890 - MIR SINE MIR 0 262 23 383 283 23 75 chr6 52525232 52525405 -136754149 + MIR SINE MIR 49 212 -50 932 241 16 16 chr6 52525568 52525813 -136753741 - MIR SINE MIR -10 252 8 1345 263 61 32 chr6 52526415 52526582 -136752972 + L1ME3A LINE L1 5596 5757 -413 2340 97 0 3 chr6 52526582 52526890 -136752664 + AluSx SINE Alu 1 307 -5 1345 263 61 32 chr6 52526890 52527277 -136752277 + L1ME3A LINE L1 5757 6166 -4 2282 105 0 0 chr6 52527297 52527602 -136751952 + AluSq SINE Alu 1 305 -8 363 179 32 21 chr6 52527724 52527819 -136751735 + L1ME LINE L1 5516 5611 -510 347 285 67 12 chr6 52527824 52527989 -136751565 + L1ME LINE L1 5651 5824 -297 823 258 66 0 chr6 52528229 52528442 -136751112 - MIR SINE MIR -2 260 34 535 289 7 0 chr6 52530033 52530175 -136749379 - L1ME3 LINE L1 -3 6159 6017 2614 42 0 0 chr6 52530356 52530666 -136748888 + AluY SINE Alu 1 310 -1 217 217 0 22 chr6 52530865 52530911 -136748643 + G-rich Low_complexity Low_complexity 3 47 0 205 304 0 0 chr6 52531301 52531347 -136748207 + (CACG)n Simple_repeat Simple_repeat 3 48 0 263 331 95 53 chr6 52531727 52531834 -136747720 - MIR SINE MIR -40 222 104 2408 89 0 0 chr6 52531834 52532138 -136747416 + AluSx SINE Alu 1 304 -8 263 331 95 53 chr6 52532138 52532199 -136747355 - MIR SINE MIR -158 104 47 315 308 14 39 chr6 52532958 52533131 -136746423 + MIR3 SINE MIR 33 201 -7 770 196 55 26 chr6 52533920 52534125 -136745429 - MIR SINE MIR -17 245 39 643 298 28 19 chr6 52534415 52534630 -136744924 + MIR SINE MIR 1 217 -45 255 173 58 0 chr6 52534745 52534797 -136744757 + MER5A DNA MER1_type 55 109 -80 266 207 0 0 chr6 52537679 52537737 -136741817 + (CCCCAG)n Simple_repeat Simple_repeat 3 60 0 567 265 82 5 chr6 52538667 52538863 -136740691 + LTR16C LTR ERVL 248 458 -33 691 283 113 0 chr6 52539398 52539610 -136739944 + MIR SINE MIR 19 254 -8 194 173 0 19 chr6 52539627 52539679 -136739875 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 679 166 6 22 chr6 52539701 52539882 -136739672 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 1720 156 0 7 chr6 52539954 52540229 -136739325 - AluJb SINE Alu -8 304 32 219 274 78 69 chr6 52541083 52541185 -136738369 - L2 LINE L2 -31 3282 3180 450 207 86 9 chr6 52541299 52541415 -136738139 - MIR SINE MIR -33 229 105 488 196 10 10 chr6 52542591 52542693 -136736861 + MIR SINE MIR 48 149 -113 756 200 0 0 chr6 52544259 52544419 -136735135 + (TG)n Simple_repeat Simple_repeat 1 160 0 229 351 122 8 chr6 52544467 52544598 -136734956 - MIR3 SINE MIR -15 193 48 262 179 54 0 chr6 52544728 52544784 -136734770 - L2 LINE L2 0 3313 3255 210 250 73 15 chr6 52545408 52545476 -136734078 - MIR SINE MIR -117 91 20 2352 86 0 0 chr6 52545559 52545863 -136733691 + AluSx SINE Alu 1 304 -8 468 313 20 6 chr6 52545918 52546066 -136733488 - MIR SINE MIR -67 141 34 691 200 162 0 chr6 52546258 52546443 -136733111 - MIR SINE MIR -15 247 33 281 375 7 15 chr6 52547592 52547728 -136731826 - MIR SINE MIR -51 211 77 366 273 23 55 chr6 52547956 52548084 -136731470 + MIR SINE MIR 23 146 -62 295 221 0 0 chr6 52548136 52548204 -136731350 - MER103 DNA DNA -51 115 48 777 175 32 121 chr6 52548216 52548370 -136731184 - L1MA9 LINE L1 -37 6275 6162 1861 148 16 16 chr6 52548370 52548680 -136730874 - AluJb SINE Alu -2 310 1 777 175 32 121 chr6 52548680 52548839 -136730715 - L1MA9 LINE L1 -150 6162 5990 238 213 16 0 chr6 52548941 52549002 -136730552 - Charlie8 DNA MER1_type -991 1426 1365 3931 114 0 15 chr6 52549084 52549619 -136729935 + MER1A DNA MER1_type 1 527 0 244 288 45 91 chr6 52549656 52549788 -136729766 - MIR SINE MIR -69 193 68 535 296 166 0 chr6 52549809 52550008 -136729546 - MIR SINE MIR -12 250 19 651 194 58 78 chr6 52550010 52550216 -136729338 + MIR SINE MIR 61 262 0 215 233 55 14 chr6 52550733 52550806 -136728748 - MIR SINE MIR -62 146 71 519 147 0 0 chr6 52550985 52551087 -136728467 + Charlie3 DNA MER1_type 2535 2636 -74 293 250 165 49 chr6 52551477 52551537 -136728017 + MER112 DNA MER1_type 1 53 -207 330 26 0 0 chr6 52551537 52551576 -136727978 + (CA)n Simple_repeat Simple_repeat 1 39 0 293 250 165 49 chr6 52551576 52551739 -136727815 + MER112 DNA MER1_type 53 250 -10 579 290 49 16 chr6 52551808 52551991 -136727563 - MIR SINE MIR 0 262 74 1978 99 7 11 chr6 52552149 52552451 -136727103 - AluSx SINE Alu 0 301 1 529 332 53 11 chr6 52552693 52552883 -136726671 + MIR SINE MIR 65 262 0 559 297 110 14 chr6 52553002 52553211 -136726343 - MIR SINE MIR -22 240 12 294 243 0 0 chr6 52553513 52553616 -136725938 + (CA)n Simple_repeat Simple_repeat 1 103 0 338 273 15 83 chr6 52555196 52555328 -136724226 - MIR SINE MIR -78 184 62 462 179 37 9 chr6 52555350 52555512 -136724042 - MER20 DNA MER1_type 0 219 1 458 261 33 22 chr6 52555788 52555968 -136723586 - Charlie7 DNA MER1_type -3 2609 2428 359 271 116 7 chr6 52555972 52556127 -136723427 + L1ME3A LINE L1 5437 5608 -554 1047 160 6 0 chr6 52556134 52556309 -136723245 + AluSg/x SINE Alu 137 312 0 489 287 22 2 chr6 52556310 52556478 -136723076 + L1ME3A LINE L1 5814 5983 -179 423 276 111 67 chr6 52556483 52556620 -136722934 + L1ME3A LINE L1 5935 6087 -83 2148 107 10 0 chr6 52556620 52556910 -136722644 - AluSg SINE Alu -17 293 1 423 276 111 67 chr6 52556910 52556997 -136722557 + L1ME3A LINE L1 6087 6169 -1 240 312 13 0 chr6 52557426 52557503 -136722051 + GA-rich Low_complexity Low_complexity 2 79 0 2008 139 0 7 chr6 52557580 52557881 -136721673 + AluJb SINE Alu 1 299 -13 207 316 70 18 chr6 52558357 52558471 -136721083 + L2 LINE L2 3143 3262 -10 452 269 0 0 chr6 52559112 52559216 -136720338 - L2 LINE L2 -2 3311 3208 844 181 90 23 chr6 52560086 52560263 -136719291 + MER5A DNA MER1_type 1 189 0 268 261 202 25 chr6 52560277 52560396 -136719158 - MER5B DNA MER1_type -24 154 15 788 302 29 25 chr6 52561249 52561494 -136718060 - MIR SINE MIR -3 259 14 400 261 196 7 chr6 52561697 52561850 -136717704 - MIR3 SINE MIR -4 204 23 623 113 0 70 chr6 52562205 52562320 -136717234 - FLAM_C SINE Alu 0 143 37 465 276 9 19 chr6 52562431 52562536 -136717018 + MIR SINE MIR 12 115 -147 2241 67 3 35 chr6 52565775 52566088 -136713466 - AluY SINE Alu -8 303 1 202 118 29 0 chr6 52566182 52566216 -136713338 + GA-rich Low_complexity Low_complexity 1 35 0 186 51 0 128 chr6 52566455 52566494 -136713060 + MIR SINE MIR 228 261 -1 1262 207 0 0 chr6 52566696 52566928 -136712626 - AluJo SINE Alu -13 299 68 2236 98 0 0 chr6 52567305 52567602 -136711952 + AluSq SINE Alu 1 297 -16 201 257 14 0 chr6 52567746 52567820 -136711734 + (TAAA)n Simple_repeat Simple_repeat 2 76 0 306 0 0 0 chr6 52570308 52570342 -136709212 + (TG)n Simple_repeat Simple_repeat 2 35 0 592 211 0 0 chr6 52570687 52570796 -136708758 - FLAM_C SINE Alu -23 120 12 2076 190 49 7 chr6 52570838 52571286 -136708268 - L1MC4a LINE L1 -316 7492 7026 263 276 105 19 chr6 52571344 52571449 -136708105 - MIR SINE MIR -31 231 118 321 198 25 49 chr6 52571852 52571933 -136707621 - MLT1K LTR MaLR -323 265 187 382 308 67 0 chr6 52572160 52572280 -136707274 + MIR SINE MIR 65 192 -70 588 250 15 19 chr6 52572353 52572534 -136707020 + L1ME3A LINE L1 5993 6165 -5 2146 114 0 0 chr6 52572546 52572843 -136706711 - AluSx SINE Alu -15 297 1 2053 110 0 0 chr6 52572851 52573172 -136706382 - AluSg SINE Alu 0 321 1 251 125 42 0 chr6 52573213 52573261 -136706293 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 203 243 0 0 chr6 52573264 52573301 -136706253 + polypurine Low_complexity Low_complexity 3 39 0 2082 88 3 10 chr6 52574599 52574894 -136704660 - AluSx SINE Alu -19 293 1 318 268 73 6 chr6 52575496 52575650 -136703904 + MIR SINE MIR 54 218 -44 509 167 0 12 chr6 52575875 52575959 -136703595 - AluJ/FLAM SINE Alu -228 84 2 21 0 0 0 chr6 52576889 52576910 -136702644 + AT_rich Low_complexity Low_complexity 1 21 0 774 194 22 0 chr6 52577045 52577184 -136702370 - FLAM_C SINE Alu 0 143 2 461 158 133 42 chr6 52577249 52577457 -136702097 - FLAM_C SINE Alu 0 133 1 2172 108 0 0 chr6 52578170 52578467 -136701087 - AluSx SINE Alu -15 297 1 23 54 0 0 chr6 52578973 52579010 -136700544 + AT_rich Low_complexity Low_complexity 1 37 0 2188 91 10 3 chr6 52579603 52579910 -136699644 - AluSx SINE Alu -2 310 2 1130 134 11 0 chr6 52580961 52581148 -136698406 + AluSp SINE Alu 125 313 0 1725 150 0 21 chr6 52582523 52582850 -136696704 + AluJb SINE Alu 1 321 0 190 234 43 0 chr6 52582862 52582909 -136696645 - MIR SINE MIR -112 150 102 1857 142 0 10 chr6 52583354 52583656 -136695898 + AluSx SINE Alu 1 299 -13 196 211 66 40 chr6 52583679 52583755 -136695799 + MIR SINE MIR 141 218 -44 346 238 50 13 chr6 52583963 52584093 -136695461 - MIR SINE MIR -64 144 21 335 201 383 14 chr6 52584627 52584841 -136694713 - L3 LINE CR1 -9 1568 1276 445 290 122 0 chr6 52584892 52585023 -136694531 + MIR SINE MIR 116 262 0 2110 108 0 0 chr6 52585042 52585503 -136694051 - AluSx SINE Alu 0 461 1 212 59 29 0 chr6 52585985 52586019 -136693535 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1816 101 58 0 chr6 52586025 52586283 -136693271 - AluSx SINE Alu -39 273 1 1959 100 41 3 chr6 52586461 52586752 -136692802 - AluSg SINE Alu -8 302 1 181 222 22 22 chr6 52587426 52587471 -136692083 - L2 LINE L2 -85 3187 3143 616 256 62 6 chr6 52587508 52587668 -136691886 + MIR SINE MIR 65 233 -29 2141 86 40 7 chr6 52588037 52588338 -136691216 - AluSx SINE Alu 0 312 2 549 248 7 34 chr6 52588376 52588525 -136691029 - L2 LINE L2 -4 3309 3165 739 169 0 8 chr6 52588577 52588701 -136690853 + FLAM_C SINE Alu 2 124 -9 2386 46 3 0 chr6 52588707 52588990 -136690564 - AluSx SINE Alu -23 289 6 469 339 46 27 chr6 52589057 52589618 -136689936 - L1M4 LINE L1 -1986 4160 3589 195 42 0 0 chr6 52590512 52590536 -136689018 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 209 227 0 0 chr6 52590749 52590793 -136688761 + (TA)n Simple_repeat Simple_repeat 2 45 0 605 264 32 80 chr6 52591073 52591446 -136688108 + L1MC4a LINE L1 7269 7645 -163 551 281 54 0 chr6 52591480 52591665 -136687889 - L1ME1 LINE L1 -4 6162 5968 789 216 59 59 chr6 52591674 52591980 -136687574 + L1MC5 LINE L1 7603 7908 -53 1813 140 0 7 chr6 52592005 52592315 -136687239 + AluJb SINE Alu 7 314 0 236 289 58 58 chr6 52592716 52592820 -136686734 + MIR3 SINE MIR 71 174 -34 2410 58 0 3 chr6 52593920 52594230 -136685324 + AluY SINE Alu 1 309 -2 1870 102 10 37 chr6 52594249 52594576 -136684978 + AluSq SINE Alu 1 319 0 818 150 0 0 chr6 52594595 52594722 -136684832 - AluSg/x SINE Alu -10 302 176 2155 98 0 0 chr6 52595668 52595977 -136683577 + AluSx SINE Alu 1 309 0 1149 133 0 0 chr6 52596905 52597108 -136682446 - AluSc SINE Alu 0 309 120 1002 204 63 5 chr6 52597818 52598024 -136681530 - MER20 DNA MER1_type 0 219 2 186 143 0 0 chr6 52598155 52598190 -136681364 + (ATGGTG)n Simple_repeat Simple_repeat 4 38 0 1970 122 3 7 chr6 52599147 52599441 -136680113 - AluSc SINE Alu -16 293 1 202 306 138 12 chr6 52600186 52600346 -136679208 + L2 LINE L2 2873 3052 -220 491 294 55 0 chr6 52600574 52600737 -136678817 - MER117 DNA MER1_type -1 196 25 1149 158 0 0 chr6 52600788 52600972 -136678582 + AluSq SINE Alu 1 184 -129 598 191 74 25 chr6 52601321 52601483 -136678071 - L1MD3 LINE L1 0 7995 7826 518 250 8 0 chr6 52601507 52601631 -136677923 - L1MC4a LINE L1 -132 7676 7552 797 222 64 0 chr6 52601638 52601809 -136677745 - FRAM SINE Alu 0 176 1 2340 69 0 3 chr6 52601826 52602129 -136677425 + AluY SINE Alu 1 302 -9 1962 105 14 14 chr6 52602133 52602429 -136677125 + AluSq SINE Alu 3 298 -15 551 238 115 62 chr6 52602429 52602507 -136677047 + L1M4 LINE L1 4239 4311 -1835 304 133 12 84 chr6 52602507 52602590 -136676964 - MER116 DNA Mariner -3 77 1 551 238 115 62 chr6 52602590 52602868 -136676686 + L1M4 LINE L1 4311 4614 -1532 493 237 155 34 chr6 52602908 52603199 -136676355 + L1M4 LINE L1 5006 5331 -815 2111 89 0 20 chr6 52603291 52603583 -136675971 - AluSg SINE Alu -24 286 1 236 206 0 29 chr6 52603673 52603741 -136675813 + L1M2 LINE L1 5366 5431 -860 639 245 76 0 chr6 52603800 52603984 -136675570 + MIR SINE MIR 59 256 -6 2182 84 0 44 chr6 52604048 52604368 -136675186 - AluSq SINE Alu -7 306 1 198 335 204 8 chr6 52605641 52605886 -136673668 + L2 LINE L2 1875 2167 -1147 269 207 54 68 chr6 52605937 52606053 -136673501 - L1MB8 LINE L1 0 6184 6067 1712 140 45 14 chr6 52606058 52606344 -136673210 - AluJb SINE Alu -17 295 1 258 245 101 44 chr6 52608342 52608501 -136671053 - L1MC4a LINE L1 -1898 5910 5743 1858 87 98 0 chr6 52608636 52608901 -136670653 - AluSc SINE Alu -18 291 1 21 0 0 0 chr6 52609592 52609613 -136669941 + AT_rich Low_complexity Low_complexity 1 21 0 1793 119 0 4 chr6 52609723 52609976 -136669578 - AluSq SINE Alu -61 252 1 214 299 0 46 chr6 52610469 52610482 -136669072 - MIR SINE MIR -147 115 103 2784 87 64 5 chr6 52610482 52610886 -136668668 + MSTA LTR MaLR 1 428 0 214 299 0 46 chr6 52610886 52610959 -136668595 - MIR SINE MIR -159 103 33 2182 80 17 7 chr6 52611461 52611760 -136667794 + AluSc SINE Alu 1 302 -7 1688 164 7 23 chr6 52611821 52612120 -136667434 + AluJo SINE Alu 1 294 -18 6400 156 25 41 chr6 52612273 52612872 -136666682 + L1P4 LINE L1 3862 4469 -1696 264 77 0 0 chr6 52612872 52612911 -136666643 + (CA)n Simple_repeat Simple_repeat 2 40 0 6400 156 25 41 chr6 52612911 52614260 -136665294 + L1P4 LINE L1 4469 5770 -395 3789 124 2 0 chr6 52614257 52614795 -136664759 + L1PBa LINE L1 1222 1760 -5103 * 1874 215 33 33 chr6 52614777 52615156 -136664398 + L1 LINE L1 2655 3036 -3110 * 1899 159 7 0 chr6 52615156 52615464 -136664090 + AluJo SINE Alu 3 312 0 1874 215 33 33 chr6 52615464 52615601 -136663953 + L1 LINE L1 3035 3171 -2975 2728 99 31 5 chr6 52615606 52616020 -136663534 + L1PB2 LINE L1 5724 6148 -3 2428 74 0 0 chr6 52616121 52616432 -136663122 + AluY SINE Alu 1 311 0 193 390 32 0 chr6 52616485 52616580 -136662974 - L2 LINE L2 -208 3064 2967 28 29 0 0 chr6 52616828 52616863 -136662691 + AT_rich Low_complexity Low_complexity 1 35 0 865 167 75 54 chr6 52616884 52617070 -136662484 + AluJo SINE Alu 120 309 -3 370 292 88 0 chr6 52617266 52617379 -136662175 - L2 LINE L2 0 3272 3150 1230 146 171 0 chr6 52617481 52617721 -136661833 + Ricksha DNA DNA 9 289 -2957 * 1512 115 0 47 chr6 52617719 52617802 -136661752 + Ricksha DNA DNA 1821 1906 -1340 2068 124 0 0 chr6 52617802 52618101 -136661453 + AluSx SINE Alu 1 299 -13 1512 115 0 47 chr6 52618101 52618251 -136661303 + Ricksha DNA DNA 1906 2043 -1203 1236 116 0 0 chr6 52618251 52618423 -136661131 + AluSg/x SINE Alu 134 305 -7 1994 142 83 63 chr6 52618423 52618867 -136660687 + Ricksha DNA DNA 2037 2489 -757 217 117 26 39 chr6 52618870 52618947 -136660607 + (TA)n Simple_repeat Simple_repeat 2 77 0 824 235 13 0 chr6 52618947 52619100 -136660454 - FAM SINE Alu -30 155 1 782 132 0 8 chr6 52619100 52619219 -136660335 - AluSc SINE Alu -74 235 118 373 60 0 20 chr6 52619219 52619269 -136660285 - Ricksha DNA DNA -1218 2028 1980 * 1401 155 34 11 chr6 52619261 52619526 -136660028 + Ricksha DNA DNA 2476 2746 -500 660 234 0 0 chr6 52619527 52619651 -136659903 + FLAM_A SINE Alu 1 124 -9 1697 171 0 13 chr6 52619653 52619789 -136659765 + AluSx SINE Alu 1 137 -175 2178 113 0 0 chr6 52619789 52620099 -136659455 + AluSq SINE Alu 1 310 -3 1697 171 0 13 chr6 52620099 52620267 -136659287 + AluSx SINE Alu 137 301 -11 1443 178 17 3 chr6 52620337 52620635 -136658919 - AluSg SINE Alu -3 307 6 22 35 0 0 chr6 52620816 52620845 -136658709 + GC_rich Low_complexity Low_complexity 1 29 0 2149 101 7 0 chr6 52621369 52621665 -136657889 - AluSx SINE Alu -14 298 1 4964 202 47 15 chr6 52621665 52622435 -136657119 + L1 LINE L1 3394 4138 -2008 2175 94 3 7 chr6 52622435 52622743 -136656811 + AluSg1 SINE Alu 1 307 -2 4964 202 47 15 chr6 52622743 52622801 -136656753 + L1 LINE L1 4138 4193 -1953 2099 110 3 16 chr6 52622801 52623109 -136656445 + AluSq SINE Alu 1 304 -9 4964 202 47 15 chr6 52623109 52623516 -136656038 + L1 LINE L1 4193 4670 -1476 2405 128 32 77 chr6 52623518 52623670 -136655884 + L1MB2 LINE L1 5678 5835 -336 2159 90 14 0 chr6 52623670 52623958 -136655596 + AluSp SINE Alu 1 292 -21 2405 128 32 77 chr6 52623958 52624312 -136655242 + L1MB2 LINE L1 5835 6161 -10 2291 83 3 10 chr6 52624477 52624789 -136654765 + AluSp SINE Alu 1 310 -3 2224 96 0 0 chr6 52624797 52625099 -136654455 + AluSx SINE Alu 1 302 -10 1822 155 3 3 chr6 52625539 52625835 -136653719 - AluSx SINE Alu -15 297 2 2021 141 0 0 chr6 52625995 52626307 -136653247 + AluSx SINE Alu 1 312 0 2177 105 0 0 chr6 52626528 52626822 -136652732 + AluSx SINE Alu 1 294 -18 2357 57 0 7 chr6 52626854 52627152 -136652402 + AluY SINE Alu 1 296 -15 1759 113 52 84 chr6 52627450 52627794 -136651760 + MER44D DNA MER2_type 7 609 0 1728 141 54 4 chr6 52628127 52628404 -136651150 + AluJb SINE Alu 3 293 -19 1682 264 51 15 chr6 52629256 52629771 -136649783 + L2 LINE L2 2782 3313 0 428 282 120 79 chr6 52629767 52630386 -136649168 + L2 LINE L2 2542 3270 -2 * 180 179 103 0 chr6 52630584 52630623 -136648931 - L2 LINE L2 -660 2654 2612 336 153 51 127 chr6 52630765 52630883 -136648671 + L1MC5 LINE L1 7187 7295 -666 261 204 56 0 chr6 52630897 52630951 -136648603 + L1MC5 LINE L1 7384 7440 -521 303 93 0 0 chr6 52631019 52631062 -136648492 + (GA)n Simple_repeat Simple_repeat 1 43 0 361 209 61 31 chr6 52631089 52631252 -136648302 + L1MC5 LINE L1 7519 7686 -275 1988 95 3 25 chr6 52631252 52631566 -136647988 - AluSc SINE Alu 0 309 7 1694 121 32 7 chr6 52631798 52632079 -136647475 - AluSq SINE Alu -25 288 1 2015 144 35 96 chr6 52632087 52632353 -136647201 + Ricksha DNA DNA 2798 3078 -189 2281 88 0 7 chr6 52632353 52632661 -136646893 - AluSx SINE Alu 0 312 7 2015 144 35 96 chr6 52632661 52632722 -136646832 + Ricksha DNA DNA 3078 3141 -126 1891 91 65 0 chr6 52632722 52632998 -136646556 + AluSp SINE Alu 1 294 -19 1115 171 0 0 chr6 52633007 52633182 -136646372 + FAM SINE Alu 1 175 0 2015 144 35 96 chr6 52633182 52633358 -136646196 + Ricksha DNA DNA 3149 3254 -13 2094 119 0 3 chr6 52633500 52633810 -136645744 + AluSx SINE Alu 1 309 -3 229 258 16 0 chr6 52633819 52633881 -136645673 + L1M4c LINE L1 173 235 -6078 187 281 180 0 chr6 52633881 52633970 -136645584 + L2 LINE L2 3168 3272 0 1789 241 98 41 chr6 52634050 52634901 -136644653 + L1M4c LINE L1 480 1448 -4860 2230 86 3 0 chr6 52634901 52635191 -136644363 + AluSc SINE Alu 1 291 -18 1789 241 98 41 chr6 52635191 52635557 -136643997 + L1M4c LINE L1 1448 1792 -4516 * 2341 196 74 24 chr6 52635551 52635843 -136643711 + L1M4c LINE L1 2085 2361 -4021 1359 164 0 118 chr6 52635843 52636043 -136643511 - AluJb SINE Alu -22 290 143 2068 102 10 3 chr6 52636043 52636337 -136643217 + AluY SINE Alu 1 296 -15 1359 164 0 118 chr6 52636337 52636465 -136643089 - AluJb SINE Alu -169 143 1 2341 196 74 24 chr6 52636465 52637063 -136642491 + L1M4c LINE L1 2361 3022 -3360 2021 133 3 0 chr6 52637064 52637366 -136642188 - AluSx SINE Alu -1 311 9 691 85 0 66 chr6 52637447 52637553 -136642001 - FLAM_A SINE Alu -16 126 28 293 292 111 29 chr6 52638256 52638427 -136641127 - MIR SINE MIR -10 252 68 695 195 0 0 chr6 52638631 52638744 -136640810 + AluJo/FLAM SINE Alu 6 118 -194 1118 157 0 43 chr6 52638746 52638956 -136640598 - AluJo SINE Alu -16 296 96 3449 240 144 32 chr6 52639009 52640428 -136639126 + HAL1 LINE L1 296 1872 -635 2166 110 0 3 chr6 52640436 52640745 -136638809 - AluSg SINE Alu -2 308 1 279 0 0 0 chr6 52640802 52640833 -136638721 + (A)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr6 52641358 52641381 -136638173 + AT_rich Low_complexity Low_complexity 1 23 0 362 276 30 63 chr6 52641396 52641664 -136637890 + L1ME3A LINE L1 4517 4775 -1371 267 272 58 10 chr6 52641675 52641778 -136637776 + MER20B DNA MER1_type 32 139 -644 566 330 153 43 chr6 52641810 52642149 -136637405 + L1ME3A LINE L1 4789 5200 -946 2168 111 0 0 chr6 52642149 52642455 -136637099 + AluY SINE Alu 1 306 -5 566 330 153 43 chr6 52642455 52642606 -136636948 + L1ME3A LINE L1 5200 5333 -813 348 289 144 30 chr6 52642608 52642669 -136636885 + L1ME3A LINE L1 5365 5418 -752 1554 109 0 9 chr6 52642669 52642889 -136636665 + AluSg/x SINE Alu 84 301 -9 1661 106 133 0 chr6 52642890 52643172 -136636382 + AluSx SINE Alu 2 312 0 348 289 144 30 chr6 52643172 52643539 -136636015 + L1ME3A LINE L1 5418 5851 -319 2175 104 0 3 chr6 52643539 52643837 -136635717 - AluSg SINE Alu -13 297 1 348 289 144 30 chr6 52643837 52643877 -136635677 + L1ME3A LINE L1 5851 5885 -285 224 268 0 0 chr6 52644191 52644247 -136635307 - L2 LINE L2 0 3313 3258 337 130 0 0 chr6 52644925 52644971 -136634583 - AluS SINE Alu -244 59 14 272 211 18 0 chr6 52645150 52645207 -136634347 + AluJb SINE Alu 81 138 -164 1001 132 0 0 chr6 52645207 52645351 -136634203 + AluSq/x SINE Alu 2 145 -168 2214 103 0 6 chr6 52645351 52645662 -136633892 + AluSc SINE Alu 1 309 0 443 211 63 0 chr6 52645705 52645800 -136633754 - MIR SINE MIR -86 176 76 1982 84 11 21 chr6 52646116 52646437 -136633117 + AluSp SINE Alu 1 318 0 2569 30 0 0 chr6 52646437 52646735 -136632819 + AluY SINE Alu 1 298 -13 276 351 65 5 chr6 52646921 52647106 -136632448 + L2 LINE L2 2231 2426 -888 2300 68 0 10 chr6 52647937 52648229 -136631325 - AluSg SINE Alu -21 289 1 1115 67 0 0 chr6 52648229 52648364 -136631190 - AluSq/x SINE Alu -178 135 1 1965 119 19 16 chr6 52648542 52648852 -136630702 - AluSx SINE Alu -1 311 1 798 240 76 28 chr6 52648875 52649125 -136630429 - MIR SINE MIR 0 262 1 521 244 159 20 chr6 52649289 52649490 -136630064 - MIR SINE MIR -6 256 28 2163 92 3 3 chr6 52649641 52649935 -136629619 - AluSq SINE Alu -19 294 1 1878 127 50 7 chr6 52650379 52650678 -136628876 + AluSq SINE Alu 2 313 0 1212 142 0 28 chr6 52650810 52651022 -136628532 - AluJo SINE Alu -77 235 30 241 284 71 16 chr6 52651180 52651307 -136628247 + L1P LINE L1 5275 5408 -743 1025 253 43 30 chr6 52651317 52651724 -136627830 + L1ME4a LINE L1 5487 5901 -220 494 265 88 0 chr6 52651732 52651902 -136627652 + L1ME4a LINE L1 5933 6117 -4 2101 93 52 0 chr6 52651938 52652229 -136627325 + AluSg SINE Alu 1 306 -4 401 193 279 29 chr6 52652611 52652742 -136626812 - MER5A DNA MER1_type -5 184 19 264 297 0 22 chr6 52652742 52652833 -136626721 + MIR SINE MIR 1 89 -173 30 0 0 0 chr6 52653299 52653329 -136626225 + GC_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr6 52653480 52653509 -136626045 + GC_rich Low_complexity Low_complexity 1 29 0 314 289 99 46 chr6 52656187 52656339 -136623215 - MIR3 SINE MIR -11 197 38 260 209 104 15 chr6 52657446 52657513 -136622041 + MIR SINE MIR 180 252 -10 430 216 121 9 chr6 52658040 52658156 -136621398 - MIR SINE MIR -58 150 22 357 250 90 20 chr6 52660231 52660331 -136619223 - MER58B DNA MER1_type 0 341 235 1026 187 69 5 chr6 52660807 52661010 -136618544 - MER58B DNA MER1_type -81 260 45 2267 73 0 35 chr6 52661015 52661330 -136618224 + AluSx SINE Alu 1 304 -8 526 211 83 83 chr6 52661497 52661715 -136617839 + L2 LINE L2 2400 2617 -697 879 237 237 15 chr6 52661718 52662308 -136617246 + L2 LINE L2 2487 3189 -124 1125 144 6 0 chr6 52662363 52662537 -136617017 - AluJb SINE Alu -2 310 136 2302 72 0 28 chr6 52662593 52662911 -136616643 + AluSg SINE Alu 1 309 -1 811 205 5 21 chr6 52663106 52663236 -136616318 + AluJo SINE Alu 4 132 -180 1883 123 0 72 chr6 52663236 52663554 -136616000 + AluSx SINE Alu 1 295 -17 811 205 5 21 chr6 52663554 52663613 -136615941 + AluJo SINE Alu 132 190 -122 2218 74 40 30 chr6 52663849 52664146 -136615408 + AluY SINE Alu 1 300 -11 539 273 88 52 chr6 52664394 52664643 -136614911 + MIR SINE MIR 3 260 -2 1945 61 0 0 chr6 52664739 52664969 -136614585 - AluY SINE Alu -7 304 75 2289 98 7 3 chr6 52665309 52665606 -136613948 - AluSx SINE Alu -14 298 1 203 229 62 0 chr6 52666890 52666938 -136612616 - L2 LINE L2 0 3313 3263 738 274 65 0 chr6 52668362 52668577 -136610977 - MIR SINE MIR -24 238 10 1038 252 27 0 chr6 52669057 52669279 -136610275 + MIR SINE MIR 14 241 -21 1614 175 42 3 chr6 52669436 52669721 -136609833 - AluJb SINE Alu -14 298 3 1753 122 115 7 chr6 52669748 52670018 -136609536 + AluSg1 SINE Alu 1 299 -10 259 331 174 0 chr6 52670027 52670199 -136609355 - MIR SINE MIR -14 248 47 1240 166 18 14 chr6 52670827 52671044 -136608510 + MER20 DNA MER1_type 2 219 0 2287 94 3 3 chr6 52671840 52672137 -136607417 - AluY SINE Alu -14 297 1 181 241 74 0 chr6 52672149 52672203 -136607351 - MIR SINE MIR -46 216 159 1687 56 0 0 chr6 52672309 52672507 -136607047 + AluY SINE Alu 106 303 -8 1922 171 3 13 chr6 52672509 52672824 -136606730 + AluJo SINE Alu 1 312 0 1163 262 85 65 chr6 52672865 52673204 -136606350 - L2 LINE L2 -258 3055 2724 2279 108 3 0 chr6 52673204 52673509 -136606045 - AluSp SINE Alu -7 306 1 1163 262 85 65 chr6 52673509 52673858 -136605696 - L2 LINE L2 -589 2724 2351 602 317 78 8 chr6 52674801 52675069 -136604485 + L2 LINE L2 2472 2758 -556 2033 243 201 51 chr6 52675154 52675283 -136604271 - L2 LINE L2 -3 3310 3202 266 143 0 0 chr6 52675283 52675325 -136604229 + 5S rRNA rRNA 1 42 -79 2033 243 201 51 chr6 52675325 52675385 -136604169 - L2 LINE L2 -111 3202 3152 2281 84 3 32 chr6 52675385 52675695 -136603859 + AluSx SINE Alu 1 301 -11 2033 243 201 51 chr6 52675695 52676021 -136603533 - L2 LINE L2 -161 3152 2876 1826 159 0 41 chr6 52676021 52676160 -136603394 + AluJo SINE Alu 1 144 -168 2078 118 45 0 chr6 52676160 52676447 -136603107 + AluSx SINE Alu 1 300 -12 1826 159 0 41 chr6 52676447 52676627 -136602927 + AluJo SINE Alu 144 307 -5 2033 243 201 51 chr6 52676627 52677309 -136602245 - L2 LINE L2 -437 2876 1903 241 281 47 99 chr6 52677510 52677681 -136601873 + L2 LINE L2 3152 3313 0 1477 81 25 5 chr6 52678958 52679185 -136600369 - AluSc SINE Alu 0 307 77 705 201 0 50 chr6 52679969 52680108 -136599446 - FLAM_C SINE Alu -1 132 1 840 211 28 85 chr6 52680471 52680603 -136598951 + MIR SINE MIR 2 140 -122 2641 49 0 10 chr6 52680603 52680776 -136598778 - AluY SINE Alu -6 305 135 2943 10 0 0 chr6 52680776 52681090 -136598464 - AluYb8 SINE Alu -4 314 1 2641 49 0 10 chr6 52681090 52681224 -136598330 - AluY SINE Alu -176 135 1 2478 85 0 0 chr6 52681227 52681533 -136598021 - AluSq SINE Alu -6 307 2 840 211 28 85 chr6 52681533 52681643 -136597911 + MIR SINE MIR 142 234 -28 426 188 12 0 chr6 52681837 52681922 -136597632 + MER3 DNA MER1_type 2 87 -122 612 236 50 0 chr6 52681945 52682106 -136597448 + MER113 DNA MER1_type? 319 487 -34 722 119 18 0 chr6 52682229 52682338 -136597216 + HY1 scRNA scRNA 1 111 -1 2261 108 0 0 chr6 52682341 52682636 -136596918 - AluSg SINE Alu -15 295 1 34 0 0 0 chr6 52682636 52682670 -136596884 + AT_rich Low_complexity Low_complexity 1 34 0 184 371 0 0 chr6 52682684 52682746 -136596808 + MIR3 SINE MIR 143 204 -4 2223 98 3 3 chr6 52683149 52683458 -136596096 - AluSp SINE Alu 0 309 1 338 0 24 0 chr6 52683460 52683502 -136596052 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 1796 159 3 17 chr6 52683502 52683791 -136595763 - AluJo SINE Alu -27 285 1 793 194 0 24 chr6 52683793 52683963 -136595591 - L1MA10 LINE L1 -11 6323 6158 2463 56 0 0 chr6 52683965 52684249 -136595305 - AluY SINE Alu -26 285 2 1313 208 4 23 chr6 52684256 52684520 -136595034 - AluJo SINE Alu -23 289 31 488 185 0 0 chr6 52684522 52684603 -136594951 - AluJ/FLAM SINE Alu -230 82 2 464 276 118 12 chr6 52684648 52684818 -136594736 + MER5A DNA MER1_type 1 188 -1 539 192 39 0 chr6 52685021 52685125 -136594429 - FRAM SINE Alu -10 166 59 288 209 148 35 chr6 52685198 52685313 -136594241 + MIR SINE MIR 1 128 -134 546 261 146 3 chr6 52685325 52685726 -136593828 + LTR33A LTR ERVL 1 498 -25 429 248 67 0 chr6 52685741 52685846 -136593708 + MIR SINE MIR 121 232 -30 2328 93 7 0 chr6 52685847 52686138 -136593416 - AluSq SINE Alu -20 293 1 196 204 23 23 chr6 52686353 52686397 -136593157 - L2 LINE L2 -91 3181 3138 236 324 10 29 chr6 52686407 52686496 -136593058 + MIR3 SINE MIR 10 96 -112 660 170 10 175 chr6 52686496 52686631 -136592923 - MER5A DNA MER1_type 0 189 98 1912 133 7 11 chr6 52686631 52686917 -136592637 - AluJo SINE Alu -13 299 15 660 170 10 175 chr6 52686917 52686987 -136592567 - MER5A DNA MER1_type -91 98 18 217 215 0 92 chr6 52686991 52687056 -136592498 + MIR SINE MIR 117 175 -87 2353 106 0 0 chr6 52687101 52687403 -136592151 + AluSx SINE Alu 3 304 -8 1662 176 43 20 chr6 52687414 52687716 -136591838 + AluJb SINE Alu 1 309 -3 623 297 200 32 chr6 52688390 52688469 -136591085 - L1MC/D LINE L1 -657 5507 5443 1731 117 129 8 chr6 52688469 52688757 -136590797 - AluSx SINE Alu 0 312 2 1684 104 0 9 chr6 52688758 52688978 -136590576 - AluSg/x SINE Alu -9 303 86 623 297 200 32 chr6 52688978 52689192 -136590362 - L1MC/D LINE L1 -721 5443 5266 2033 144 3 0 chr6 52689192 52689491 -136590063 - AluY SINE Alu -5 306 7 623 297 200 32 chr6 52689491 52689839 -136589715 - L1MC/D LINE L1 -898 5266 4789 242 282 58 10 chr6 52689871 52689974 -136589580 - MER20B DNA MER1_type -644 139 32 331 276 30 63 chr6 52689985 52690253 -136589301 - L1MC/D LINE L1 -1371 4775 4517 23 0 0 0 chr6 52690268 52690291 -136589263 + AT_rich Low_complexity Low_complexity 1 23 0 333 0 0 0 chr6 52690815 52690852 -136588702 + (T)n Simple_repeat Simple_repeat 1 37 0 2321 110 0 3 chr6 52690909 52691218 -136588336 + AluSg SINE Alu 1 308 -2 3105 240 144 32 chr6 52691226 52692645 -136586909 - HAL1 LINE L1 -635 1872 296 1220 157 0 43 chr6 52692698 52692908 -136586646 + AluJo SINE Alu 96 296 -16 716 195 0 0 chr6 52692910 52693023 -136586531 - AluJo/FLAM SINE Alu -194 118 6 291 292 111 29 chr6 52693227 52693398 -136586156 + MIR SINE MIR 68 252 -10 702 85 0 66 chr6 52694101 52694207 -136585347 + FLAM_A SINE Alu 28 126 -16 2082 129 14 0 chr6 52694288 52694575 -136584979 + AluSx SINE Alu 9 299 -13 186 288 85 76 chr6 52694593 52694711 -136584843 - L2 LINE L2 -4 3268 3150 307 290 11 43 chr6 52695156 52695249 -136584305 - MIR SINE MIR -116 92 2 2204 105 10 10 chr6 52695429 52695723 -136583831 + AluSg SINE Alu 1 294 -16 2424 75 3 16 chr6 52696111 52696416 -136583138 + AluSg SINE Alu 1 301 -9 202 313 8 102 chr6 52696603 52696731 -136582823 - L2 LINE L2 -1 3312 3197 43 92 0 0 chr6 52696877 52696997 -136582557 + AT_rich Low_complexity Low_complexity 1 120 0 1824 183 16 13 chr6 52697149 52697460 -136582094 - AluJb SINE Alu 0 312 1 723 171 134 27 chr6 52697484 52697671 -136581883 + MIR SINE MIR 47 253 -9 194 61 0 30 chr6 52697677 52697710 -136581844 + (CAT)n Simple_repeat Simple_repeat 2 33 0 350 280 32 0 chr6 52697823 52697916 -136581638 - MIR SINE MIR -10 252 157 2403 71 0 26 chr6 52699215 52699524 -136580030 - AluY SINE Alu -10 301 1 492 158 0 0 chr6 52699682 52699764 -136579790 - SVA Other Other -783 603 522 2488 85 0 0 chr6 52701065 52701371 -136578183 - AluY SINE Alu -5 306 1 241 229 60 48 chr6 52702913 52702996 -136576558 + MIR3 SINE MIR 90 173 -35 189 289 0 0 chr6 52703332 52703377 -136576177 - MIR SINE MIR -3 259 215 2494 74 3 0 chr6 52703380 52703679 -136575875 - AluSg SINE Alu -8 302 3 403 169 26 0 chr6 52704120 52704197 -136575357 + AluS SINE Alu 231 309 -2 403 316 89 47 chr6 52704431 52704961 -136574593 + L1ME4a LINE L1 5254 5849 -272 2289 82 17 10 chr6 52704961 52705254 -136574300 + AluSx SINE Alu 1 295 -17 403 316 89 47 chr6 52705254 52705431 -136574123 + L1ME4a LINE L1 5849 6017 -104 2434 90 0 0 chr6 52705500 52705801 -136573753 - AluY SINE Alu -10 301 1 1906 132 19 19 chr6 52705805 52706115 -136573439 - AluSx SINE Alu -2 310 1 190 237 0 0 chr6 52706116 52706154 -136573400 - MIR SINE MIR -36 226 189 207 311 12 114 chr6 52708094 52708261 -136571293 + MIR3 SINE MIR 16 165 -43 364 241 158 38 chr6 52710021 52710179 -136569375 + MIR SINE MIR 83 259 -3 2138 111 7 20 chr6 52710316 52710613 -136568941 - AluSx SINE Alu -19 293 1 2538 54 0 16 chr6 52710622 52710935 -136568619 - AluY SINE Alu -3 308 1 187 364 56 42 chr6 52711078 52711221 -136568333 - L2 LINE L2 -1116 2198 2054 874 250 35 9 chr6 52711461 52711693 -136567861 + MIR SINE MIR 25 262 0 213 94 0 0 chr6 52713834 52713866 -136565688 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr6 52713872 52713893 -136565661 + (TCTCCC)n Simple_repeat Simple_repeat 1 21 0 25 65 0 0 chr6 52714400 52714446 -136565108 + GC_rich Low_complexity Low_complexity 1 46 0 1850 44 0 0 chr6 52715905 52716134 -136563420 - AluY SINE Alu -3 308 80 1164 185 26 9 chr6 52716237 52716464 -136563090 + LOR1a LTR ERV1 267 497 0 360 288 85 32 chr6 52716684 52716867 -136562687 - L1MEd LINE L1 -1187 1303 1025 2491 42 0 26 chr6 52717071 52717380 -136562174 - AluSg SINE Alu -9 301 1 2265 62 10 0 chr6 52717383 52717673 -136561881 - AluSg SINE Alu -17 293 1 700 157 37 37 chr6 52720102 52720236 -136559318 - AluJo SINE Alu -177 135 2 2396 78 0 0 chr6 52722074 52722383 -136557171 - AluSc SINE Alu 0 309 1 583 255 185 9 chr6 52723106 52723322 -136556232 + MIR SINE MIR 9 262 0 1871 159 10 0 chr6 52723728 52724037 -136555517 - AluSx SINE Alu 0 312 1 579 221 39 16 chr6 52724082 52724209 -136555345 - FLAM_A SINE Alu -2 131 2 25 0 0 0 chr6 52724360 52724385 -136555169 + AT_rich Low_complexity Low_complexity 1 25 0 2183 118 0 0 chr6 52724402 52724708 -136554846 + AluSx SINE Alu 1 306 -6 2103 92 3 3 chr6 52724839 52725155 -136554399 + AluSg SINE Alu 1 316 0 829 225 65 30 chr6 52725163 52725363 -136554191 - MIR SINE MIR -10 252 46 2146 68 0 31 chr6 52725673 52726004 -136553550 - AluY SINE Alu 0 322 1 1169 178 138 4 chr6 52726579 52726826 -136552728 + Charlie1b DNA MER1_type 8 287 -236 233 235 284 0 chr6 52727002 52727083 -136552471 - L2 LINE L2 -18 3295 3192 2247 83 3 0 chr6 52727247 52727549 -136552005 + AluSc SINE Alu 1 303 -6 1552 153 0 19 chr6 52727558 52727826 -136551728 + AluJo SINE Alu 37 299 -13 756 189 0 0 chr6 52727826 52727953 -136551601 + FLAM_C SINE Alu 2 128 -5 2120 115 0 0 chr6 52728121 52728439 -136551115 + AluSx SINE Alu 1 312 0 36 40 0 0 chr6 52728787 52728837 -136550717 + AT_rich Low_complexity Low_complexity 1 50 0 2199 82 0 0 chr6 52728882 52729183 -136550371 - AluSx SINE Alu 0 301 1 330 266 156 0 chr6 52729183 52729292 -136550262 - HAL1 LINE L1 -2381 126 1 1333 181 55 48 chr6 52729399 52729692 -136549862 + AluJo SINE Alu 1 295 -7 315 211 33 67 chr6 52729736 52729826 -136549728 - MIR SINE MIR -13 249 163 1374 156 12 16 chr6 52730387 52730631 -136548923 + AluSx SINE Alu 1 243 -69 2275 82 7 0 chr6 52730752 52731046 -136548508 - AluSx SINE Alu -16 296 1 2042 138 0 0 chr6 52731218 52731523 -136548031 - AluSx SINE Alu -7 305 1 192 382 22 22 chr6 52731719 52731855 -136547699 + L2 LINE L2 2730 2865 -449 1583 174 41 10 chr6 52732678 52732972 -136546582 - AluJb SINE Alu -9 303 1 496 272 97 29 chr6 52735434 52735640 -136543914 - MLT1J LTR MaLR -62 449 230 435 306 44 19 chr6 52735669 52735829 -136543725 - MLT1J LTR MaLR -347 164 1 710 221 110 78 chr6 52736620 52736766 -136542788 - Tigger8 DNA MER2_type -10 656 516 2060 113 36 0 chr6 52736766 52737068 -136542486 - AluSp SINE Alu 0 313 1 2099 120 0 3 chr6 52737072 52737373 -136542181 - AluSq SINE Alu -13 300 1 710 221 110 78 chr6 52737373 52737529 -136542025 - Tigger8 DNA MER2_type -152 514 339 2184 98 0 19 chr6 52737570 52737740 -136541814 - AluSc SINE Alu -8 301 129 2272 79 0 19 chr6 52737740 52738055 -136541499 - AluY SINE Alu -1 310 2 2447 49 10 0 chr6 52738056 52738363 -136541191 - AluY SINE Alu -1 310 1 2184 98 0 19 chr6 52738363 52738497 -136541057 - AluSc SINE Alu -179 130 1 226 315 168 47 chr6 52738952 52739101 -136540453 - MIR3 SINE MIR -16 192 26 183 80 0 0 chr6 52739255 52739280 -136540274 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 2076 118 3 13 chr6 52740136 52740441 -136539113 + AluSx SINE Alu 1 302 -10 396 278 89 44 chr6 52741210 52741390 -136538164 + MIR SINE MIR 20 207 -55 715 133 83 0 chr6 52741448 52741568 -136537986 - FLAM_C SINE Alu -3 130 1 328 169 0 0 chr6 52741569 52741628 -136537926 - Charlie1a DNA MER1_type -137 1318 1260 1101 112 0 0 chr6 52741628 52741780 -136537774 - AluSx SINE Alu -16 294 143 464 153 0 0 chr6 52741782 52741854 -136537700 - AluSx SINE Alu -239 73 2 183 42 0 0 chr6 52741858 52741882 -136537672 + (TA)n Simple_repeat Simple_repeat 2 25 0 1675 167 14 7 chr6 52741886 52742179 -136537375 - AluJo SINE Alu -17 295 1 1631 173 82 6 chr6 52742180 52742545 -136537009 - Charlie1a DNA MER1_type -192 1263 871 873 125 0 15 chr6 52742545 52742681 -136536873 - FLAM_C SINE Alu -9 134 1 702 107 164 0 chr6 52742682 52742804 -136536750 - Charlie1a DNA MER1_type -575 880 739 1924 113 3 11 chr6 52742804 52743127 -136536427 - AluSx SINE Alu 0 323 3 2091 112 0 0 chr6 52743138 52743424 -136536130 - AluSx SINE Alu -24 288 3 1006 199 34 11 chr6 52743424 52743683 -136535871 - L1M4 LINE L1 -3101 3045 2778 1127 102 28 17 chr6 52743683 52743859 -136535695 + AluYb8 SINE Alu 2 179 -139 596 143 20 10 chr6 52743959 52744057 -136535497 - AluS SINE Alu -212 101 3 2048 185 139 75 chr6 52744059 52744167 -136535387 - Charlie1a DNA MER1_type -2034 727 627 2034 110 3 7 chr6 52744167 52744466 -136535088 + AluSx SINE Alu 1 298 -14 2048 185 139 75 chr6 52744466 52744767 -136534787 - Charlie1a DNA MER1_type -2134 627 347 2267 87 0 3 chr6 52744767 52745066 -136534488 - AluSx SINE Alu -10 302 5 2048 185 139 75 chr6 52745066 52745325 -136534229 - Charlie1a DNA MER1_type -2414 347 15 2333 86 0 0 chr6 52745325 52745628 -136533926 - AluSc SINE Alu -6 303 1 31 68 0 0 chr6 52747420 52747479 -136532075 + GC_rich Low_complexity Low_complexity 1 59 0 410 358 44 47 chr6 52750362 52750658 -136528896 - L3b LINE CR1 -37 1546 1252 618 261 40 17 chr6 52750659 52750835 -136528719 - MIR SINE MIR 0 262 83 186 288 17 0 chr6 52750946 52751005 -136528549 - MIR SINE MIR -182 80 21 400 156 11 1 chr6 52751510 52751782 -136527772 - AluJb SINE Alu 0 313 1 1924 103 53 4 chr6 52751821 52752102 -136527452 - AluSx SINE Alu -17 295 1 244 299 94 17 chr6 52752118 52752235 -136527319 - MIR SINE MIR 0 262 137 479 206 19 3 chr6 52752241 52752368 -136527186 - L1MC4 LINE L1 -13 8025 7668 2025 136 0 0 chr6 52752880 52753182 -136526372 + AluSx SINE Alu 1 302 -10 881 128 0 0 chr6 52753521 52753654 -136525900 + AluSp/q SINE Alu 176 308 -5 2077 130 0 3 chr6 52753744 52754051 -136525503 + AluSx SINE Alu 1 306 -6 2063 110 0 7 chr6 52755194 52755485 -136524069 - AluSx SINE Alu -23 289 1 259 65 0 0 chr6 52756272 52756303 -136523251 - Alu SINE Alu -266 36 6 1468 85 0 15 chr6 52756611 52756811 -136522743 + AluSq SINE Alu 70 266 -47 536 0 0 15 chr6 52756823 52756888 -136522666 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 1197 178 35 0 chr6 52756890 52757120 -136522434 + L1MB5 LINE L1 5937 6174 0 1478 275 23 43 chr6 52757831 52758274 -136521280 + LTR33 LTR ERVL 1 434 -87 277 148 167 0 chr6 52758272 52758326 -136521228 - MER45A DNA AcHobo -11 167 105 * 658 219 0 22 chr6 52758326 52758463 -136521091 + AluJo SINE Alu 2 135 -177 438 235 59 10 chr6 52758466 52758568 -136520986 - MER45A DNA AcHobo -71 107 1 299 265 20 20 chr6 52758568 52758662 -136520892 + LTR33 LTR ERVL 428 521 0 1557 177 14 0 chr6 52760416 52760699 -136518855 + AluJb SINE Alu 1 287 -25 25 51 0 0 chr6 52760778 52760817 -136518737 + AT_rich Low_complexity Low_complexity 1 39 0 343 237 119 77 chr6 52760842 52761230 -136518324 - L1MC5 LINE L1 -32 7929 7526 251 350 0 21 chr6 52761320 52761417 -136518137 - MIR SINE MIR -144 118 24 1650 135 3 81 chr6 52761495 52761829 -136517725 + AluJb SINE Alu 3 310 -2 486 225 106 44 chr6 52761873 52762033 -136517521 + MIR SINE MIR 91 260 -2 246 62 0 0 chr6 52762797 52762829 -136516725 + (TC)n Simple_repeat Simple_repeat 2 33 0 1656 134 17 34 chr6 52762839 52763137 -136516417 - AluJo SINE Alu -19 293 1 612 179 57 0 chr6 52763275 52763398 -136516156 - MIR SINE MIR -47 215 86 227 269 90 13 chr6 52763925 52764003 -136515551 - L2 LINE L2 -223 3049 2966 21 0 0 0 chr6 52764957 52764978 -136514576 + GC_rich Low_complexity Low_complexity 1 21 0 227 138 0 69 chr6 52765233 52765291 -136514263 + (TCCCC)n Simple_repeat Simple_repeat 1 54 0 24 0 0 0 chr6 52765881 52765905 -136513649 + GC_rich Low_complexity Low_complexity 1 24 0 184 148 0 56 chr6 52766033 52766087 -136513467 + (TCCCC)n Simple_repeat Simple_repeat 1 51 0 219 260 117 0 chr6 52769647 52769724 -136509830 + MIR3 SINE MIR 111 196 -12 2426 93 3 0 chr6 52770340 52770650 -136508904 + AluSx SINE Alu 1 311 -1 1928 141 0 7 chr6 52771316 52771623 -136507931 - AluSx SINE Alu 0 305 1 355 311 123 50 chr6 52771667 52771927 -136507627 - L2 LINE L2 -1 3312 3034 685 271 287 39 chr6 52772012 52772130 -136507424 - L2 LINE L2 -462 2852 2765 2188 129 3 0 chr6 52772130 52772441 -136507113 + AluSx SINE Alu 1 312 0 685 271 287 39 chr6 52772441 52772945 -136506609 - L2 LINE L2 -549 2765 2387 413 18 0 18 chr6 52772945 52773000 -136506554 + (TG)n Simple_repeat Simple_repeat 2 55 0 685 271 287 39 chr6 52773000 52773055 -136506499 - L2 LINE L2 -927 2387 2347 2253 113 7 0 chr6 52773055 52773356 -136506198 - AluSx SINE Alu -9 303 1 685 271 287 39 chr6 52773356 52773815 -136505739 - L2 LINE L2 -967 2347 1431 195 100 0 0 chr6 52774135 52774165 -136505389 + (A)n Simple_repeat Simple_repeat 1 30 0 208 206 294 0 chr6 52774274 52774366 -136505188 + MIR SINE MIR 35 153 -55 375 216 51 8 chr6 52775029 52775147 -136504407 - L1MC5 LINE L1 0 8042 7835 305 202 154 39 chr6 52775312 52775416 -136504138 - MIR SINE MIR -45 217 102 374 289 74 13 chr6 52776493 52776642 -136502912 + L2 LINE L2 3103 3260 -12 538 294 111 0 chr6 52777808 52778043 -136501511 - MIR SINE MIR 0 262 2 315 323 222 20 chr6 52778306 52778504 -136501050 - L2 LINE L2 -4 3268 3031 727 219 141 10 chr6 52778517 52778709 -136500845 - MLT1A2 LTR MaLR -2 372 156 1174 127 0 0 chr6 52778755 52778913 -136500641 - AluSg/x SINE Alu -25 287 130 187 271 62 0 chr6 52778934 52778982 -136500572 + L2 LINE L2 3186 3236 -36 254 314 32 77 chr6 52779776 52779932 -136499622 - L3 LINE CR1 -232 1345 1197 402 263 50 0 chr6 52780061 52780160 -136499394 - L2 LINE L2 0 3313 3210 574 261 70 35 chr6 52780259 52780546 -136499008 - L1MEd LINE L1 -3433 2696 2400 401 0 20 0 chr6 52780700 52780749 -136498805 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 344 89 36 0 chr6 52780813 52780869 -136498685 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1022 186 203 12 chr6 52780869 52780970 -136498584 - AluJo SINE Alu -14 288 208 208 51 26 26 chr6 52780970 52781009 -136498545 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2093 125 0 0 chr6 52781009 52781288 -136498266 - AluSx SINE Alu -29 283 5 1022 186 203 12 chr6 52781288 52781427 -136498127 - AluJo SINE Alu -93 209 1 1165 275 65 53 chr6 52781429 52781495 -136498059 - L1MEd LINE L1 -5045 1074 1010 2213 132 3 0 chr6 52781495 52781806 -136497748 + AluSx SINE Alu 1 312 0 1165 275 65 53 chr6 52781806 52782487 -136497067 - L1MEd LINE L1 -5109 1010 318 243 320 13 0 chr6 52783167 52783245 -136496309 + CT-rich Low_complexity Low_complexity 5 83 0 411 311 171 27 chr6 52783303 52783525 -136496029 + MIR SINE MIR 8 261 -1 249 95 24 0 chr6 52784166 52784208 -136495346 + L1MC1 LINE L1 6287 6329 -4 187 67 0 133 chr6 52784321 52784366 -136495188 - L2 LINE L2 -218 3054 3016 2374 74 13 13 chr6 52785470 52785769 -136493785 + AluSg SINE Alu 1 299 -11 227 244 0 0 chr6 52785847 52785888 -136493666 - MIR SINE MIR -135 73 33 305 244 35 35 chr6 52786037 52786123 -136493431 - MIR3 SINE MIR -38 170 85 501 257 53 41 chr6 52787845 52788016 -136491538 - MIR SINE MIR -70 192 20 2379 70 0 38 chr6 52788105 52788444 -136491110 + AluY SINE Alu 1 327 0 269 305 110 0 chr6 52788739 52788857 -136490697 + MIR SINE MIR 50 180 -82 231 146 0 0 chr6 52789185 52789226 -136490328 + (A)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr6 52789300 52789321 -136490233 + AT_rich Low_complexity Low_complexity 1 21 0 1240 211 96 17 chr6 52790178 52790534 -136489020 + MER58D DNA MER1_type 3 386 0 2217 128 0 22 chr6 52790589 52790908 -136488646 - AluSx SINE Alu 0 312 1 459 309 71 67 chr6 52790908 52790955 -136488599 + L2 LINE L2 2687 2732 -540 369 0 0 0 chr6 52790955 52790996 -136488558 + (CA)n Simple_repeat Simple_repeat 2 42 0 459 309 71 67 chr6 52790996 52791353 -136488201 + L2 LINE L2 2732 3092 -180 2421 90 3 0 chr6 52791353 52791663 -136487891 - AluSq SINE Alu -2 311 1 459 309 71 67 chr6 52791663 52791842 -136487712 + L2 LINE L2 3092 3269 -3 181 293 113 9 chr6 52791857 52791963 -136487591 - L2 LINE L2 -221 3051 2935 8028 11 2 0 chr6 52792644 52794208 -136485346 - L1PA2 LINE L1 0 6155 4590 5755 26 0 1 chr6 52794210 52794911 -136484643 + L1PA2 LINE L1 3896 4595 -1551 278 183 67 0 chr6 52795434 52795494 -136484060 + MER82 DNA MER2_type 470 533 -120 928 118 15 0 chr6 52795589 52795725 -136483829 + FLAM_C SINE Alu 6 143 0 2513 72 3 3 chr6 52796033 52796338 -136483216 + AluSp SINE Alu 1 305 -8 908 223 83 79 chr6 52796367 52796558 -136482996 - L1MC4a LINE L1 -1643 6165 5976 3360 191 19 14 chr6 52796558 52797206 -136482348 - MER82 DNA MER2_type -1 652 2 908 223 83 79 chr6 52797206 52797350 -136482204 - L1MC4a LINE L1 -1832 5976 5834 2032 153 0 13 chr6 52797350 52797382 -136482172 - AluJb SINE Alu -2 310 279 189 0 0 0 chr6 52797382 52797403 -136482151 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 2032 153 0 13 chr6 52797403 52797684 -136481870 - AluJb SINE Alu -33 279 1 908 223 83 79 chr6 52797684 52797841 -136481713 - L1MC4a LINE L1 -1974 5834 5670 281 180 33 0 chr6 52797868 52797929 -136481625 - MLT2F LTR ERVL -600 63 1 246 250 26 26 chr6 52797935 52798011 -136481543 + L1ME LINE L1 5631 5706 -464 357 222 136 0 chr6 52801886 52801967 -136477587 - MIR SINE MIR -83 125 34 1480 204 98 0 chr6 52801973 52802380 -136477174 - AluJb SINE Alu 0 435 2 1664 167 46 15 chr6 52803840 52804164 -136475390 + MER58B DNA MER1_type 1 334 -7 186 279 0 0 chr6 52804340 52804383 -136475171 - L2 LINE L2 -9 3263 3221 2044 127 0 26 chr6 52805238 52805545 -136474009 - AluJb SINE Alu -1 311 13 218 271 0 0 chr6 52805553 52805612 -136473942 - L2 LINE L2 -1 3312 3254 243 130 72 116 chr6 52805619 52805688 -136473866 + MIR3 SINE MIR 106 171 -37 940 198 35 0 chr6 52805694 52805866 -136473688 - MER5A DNA MER1_type -7 182 5 250 283 43 22 chr6 52806342 52806434 -136473120 + L2 LINE L2 2921 3014 -258 469 357 36 78 chr6 52806588 52806975 -136472579 - L2 LINE L2 -5 3267 2897 181 311 189 15 chr6 52806985 52807191 -136472363 - L2 LINE L2 -945 2369 2128 394 250 159 53 chr6 52807345 52807477 -136472077 - MER5A DNA MER1_type 0 189 44 2209 187 65 18 chr6 52807726 52808325 -136471229 - Charlie2 DNA MER1_type 0 2862 2236 387 188 62 0 chr6 52808505 52808601 -136470953 - Charlie2 DNA MER1_type -630 2232 2131 1820 167 10 3 chr6 52808746 52808931 -136470623 - AluSq SINE Alu -12 301 112 1927 92 20 0 chr6 52808931 52809181 -136470373 + AluY SINE Alu 49 303 -8 1820 167 10 3 chr6 52809181 52809294 -136470260 - AluSq SINE Alu -201 112 1 188 345 0 0 chr6 52809412 52809467 -136470087 + L2 LINE L2 3218 3272 0 233 216 0 0 chr6 52809549 52809600 -136469954 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 1238 176 79 9 chr6 52809780 52810007 -136469547 - AluJo SINE Alu -46 266 24 237 119 0 0 chr6 52811271 52811313 -136468241 + (CAG)n Simple_repeat Simple_repeat 1 42 0 261 231 132 50 chr6 52811901 52812022 -136467532 - L2 LINE L2 -1 3312 3182 2254 115 3 13 chr6 52812288 52812601 -136466953 - AluSg SINE Alu 0 310 1 1512 159 4 37 chr6 52812603 52812873 -136466681 - AluJo SINE Alu -17 295 35 336 200 0 0 chr6 52812873 52812938 -136466616 + MER103 DNA DNA 48 112 -54 2194 129 3 3 chr6 52813461 52813764 -136465790 + AluJo SINE Alu 1 303 -9 216 191 24 0 chr6 52814408 52814450 -136465104 + MIR SINE MIR 219 261 -1 * 346 248 301 0 chr6 52814443 52814556 -136464998 - MIR SINE MIR -107 155 9 * 471 245 39 0 chr6 52814555 52814657 -136464897 - L2 LINE L2 -3 3310 3205 244 213 33 16 chr6 52814869 52814930 -136464624 + MIR SINE MIR 83 144 -64 221 242 30 30 chr6 52816000 52816066 -136463488 - MIR SINE MIR -114 148 83 282 242 0 0 chr6 52816402 52816468 -136463086 + C-rich Low_complexity Low_complexity 64 129 0 1460 11 6 0 chr6 52817341 52817515 -136462039 + (TC)n Simple_repeat Simple_repeat 2 176 0 194 266 191 11 chr6 52818392 52818486 -136461068 - MER5A DNA MER1_type 0 178 68 224 156 22 22 chr6 52818891 52818936 -136460618 + G-rich Low_complexity Low_complexity 1 45 0 292 290 121 40 chr6 52820689 52820813 -136458741 - L2 LINE L2 -2 3270 3137 2188 95 0 3 chr6 52820915 52821209 -136458345 + AluSx SINE Alu 1 293 -19 1048 123 0 18 chr6 52821209 52821370 -136458184 + AluSg/x SINE Alu 136 295 -17 263 323 113 36 chr6 52822286 52822481 -136457073 + MIR SINE MIR 7 216 -46 2211 109 0 0 chr6 52823798 52824101 -136455453 - AluSx SINE Alu -9 303 1 435 191 142 27 chr6 52824307 52824466 -136455088 - MER5A DNA MER1_type -6 183 4 368 223 167 19 chr6 52825412 52825592 -136453962 + MIR SINE MIR 36 246 -16 * 402 269 34 54 chr6 52825591 52825740 -136453814 - L2 LINE L2 0 3313 3168 23 0 0 0 chr6 52828402 52828425 -136451129 + AT_rich Low_complexity Low_complexity 1 23 0 2000 135 3 0 chr6 52828656 52828960 -136450594 + AluSx SINE Alu 3 307 -5 438 236 18 18 chr6 52829794 52829904 -136449650 - MIR SINE MIR -106 156 47 2049 123 3 0 chr6 52831298 52831598 -136447956 + AluSx SINE Alu 1 301 -11 398 263 69 31 chr6 52832450 52832610 -136446944 + MIR SINE MIR 97 262 0 243 298 0 0 chr6 52832610 52832667 -136446887 + L2 LINE L2 3255 3311 -2 451 286 36 101 chr6 52832686 52832962 -136446592 + L2 LINE L2 2920 3177 -95 600 261 150 13 chr6 52833041 52833267 -136446287 - MIR SINE MIR -5 257 1 1999 142 7 0 chr6 52833814 52834124 -136445430 - AluSx SINE Alu 0 312 1 431 216 52 0 chr6 52835295 52835411 -136444143 + L1MC4a LINE L1 5814 5935 -1873 2347 74 3 0 chr6 52835466 52835763 -136443791 + AluSp SINE Alu 1 298 -15 1999 114 0 10 chr6 52835772 52836070 -136443484 + AluSx SINE Alu 5 299 -13 2397 67 0 0 chr6 52836070 52836367 -136443187 + AluY SINE Alu 1 297 -14 477 258 133 0 chr6 52837638 52837789 -136441765 - MIR SINE MIR -21 241 71 1704 165 0 0 chr6 52837838 52838117 -136441437 - AluJo SINE Alu -13 299 21 2055 112 3 3 chr6 52838188 52838482 -136441072 + AluSq SINE Alu 1 294 -19 1999 122 24 0 chr6 52838768 52839064 -136440490 + AluSg SINE Alu 3 305 -5 384 253 23 11 chr6 52839308 52839395 -136440159 - MIR3 SINE MIR -39 169 82 240 301 12 24 chr6 52839469 52839552 -136440002 + MIR3 SINE MIR 112 193 -15 347 164 0 0 chr6 52839661 52839716 -136439838 + L2 LINE L2 3218 3272 0 331 270 70 43 chr6 52840934 52841049 -136438505 + MIR SINE MIR 29 146 -116 324 0 0 0 chr6 52841078 52841114 -136438440 + (TG)n Simple_repeat Simple_repeat 1 36 0 180 0 0 0 chr6 52843562 52843582 -136435972 + (GGA)n Simple_repeat Simple_repeat 2 21 0 253 329 0 14 chr6 52843891 52843964 -136435590 - L2 LINE L2 -1 3271 3200 2126 85 0 18 chr6 52845309 52845629 -136433925 + AluSc SINE Alu 1 315 0 846 148 105 71 chr6 52845764 52845974 -136433580 + MER20 DNA MER1_type 1 217 -2 221 196 18 0 chr6 52846281 52846337 -136433217 + GA-rich Low_complexity Low_complexity 3 59 0 2501 56 0 0 chr6 52846365 52846668 -136432886 + AluY SINE Alu 1 303 -8 362 271 104 64 chr6 52846677 52846823 -136432731 - MIR3 SINE MIR -50 158 7 513 269 43 21 chr6 52847666 52847852 -136431702 - MER117 DNA MER1_type -4 193 4 656 292 85 30 chr6 52847917 52848153 -136431401 - MIR SINE MIR -1 261 13 738 272 72 28 chr6 52848501 52848566 -136430988 - MIR SINE MIR 0 262 201 1752 175 121 6 chr6 52848566 52848921 -136430633 - MSTD LTR MaLR 0 396 1 738 272 72 28 chr6 52848921 52849105 -136430449 - MIR SINE MIR -61 201 2 966 217 53 14 chr6 52849925 52850132 -136429422 - MER58A DNA MER1_type -8 216 2 356 215 0 54 chr6 52850173 52850266 -136429288 - MER20 DNA MER1_type -2 217 130 357 323 151 40 chr6 52850290 52850512 -136429042 - L2 LINE L2 -1304 2010 1814 1751 167 0 0 chr6 52850512 52850794 -136428760 + AluJo SINE Alu 1 282 -30 231 61 0 0 chr6 52850801 52850834 -136428720 + (CAA)n Simple_repeat Simple_repeat 2 34 0 357 323 151 40 chr6 52850834 52851080 -136428474 - L2 LINE L2 -1505 1809 1481 198 103 0 0 chr6 52854725 52854754 -136424800 + (A)n Simple_repeat Simple_repeat 1 29 0 589 135 48 0 chr6 52855411 52855515 -136424039 - AluSg/x SINE Alu -13 296 188 1743 133 7 33 chr6 52855594 52855896 -136423658 - AluSx SINE Alu -18 294 1 2323 52 0 3 chr6 52855906 52856192 -136423362 - AluY SINE Alu -10 301 17 753 179 0 0 chr6 52856385 52856502 -136423052 - FLAM_C SINE Alu -25 118 2 1879 90 30 43 chr6 52856512 52856811 -136422743 - AluY SINE Alu -16 295 1 209 235 44 59 chr6 52857154 52857222 -136422332 + L2 LINE L2 3205 3271 -1 2162 117 0 0 chr6 52857488 52857797 -136421757 + AluSp SINE Alu 1 309 -4 350 188 145 0 chr6 52858649 52858718 -136420836 + MIR SINE MIR 68 146 -62 2124 110 7 0 chr6 52859053 52859353 -136420201 + AluSp SINE Alu 1 302 -11 355 341 30 30 chr6 52859440 52859575 -136419979 + MIR SINE MIR 16 150 -58 209 156 0 0 chr6 52859673 52859705 -136419849 - MIR SINE MIR -74 188 157 526 281 70 70 chr6 52859727 52859983 -136419571 - MIR SINE MIR 0 262 7 1426 187 11 11 chr6 52860038 52860321 -136419233 + AluJo SINE Alu 1 283 -29 23 0 0 0 chr6 52860389 52860412 -136419142 + AT_rich Low_complexity Low_complexity 1 23 0 1840 108 16 59 chr6 52860433 52860739 -136418815 - AluSx SINE Alu -19 293 1 2215 99 0 6 chr6 52860744 52861056 -136418498 - AluSx SINE Alu -2 310 1 324 229 107 66 chr6 52861371 52861493 -136418061 - L1ME4a LINE L1 0 6121 5995 1558 148 6 75 chr6 52861506 52861838 -136417716 + AluJo SINE Alu 3 311 -1 189 0 0 0 chr6 52861838 52861859 -136417695 + (TG)n Simple_repeat Simple_repeat 2 22 0 412 279 52 32 chr6 52862366 52862520 -136417034 - MIR3 SINE MIR -9 199 43 1960 176 101 11 chr6 52862639 52863116 -136416438 - Charlie1b DNA MER1_type 0 523 4 2114 115 0 0 chr6 52863116 52863421 -136416133 - AluSq SINE Alu -8 305 1 252 0 0 0 chr6 52863536 52863564 -136415990 + (CA)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr6 52863563 52863590 -136415964 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 2140 110 7 0 chr6 52863628 52863936 -136415618 + AluSg SINE Alu 1 310 0 1613 147 38 20 chr6 52864231 52864523 -136415031 + AluJb SINE Alu 9 305 -7 1774 97 112 4 chr6 52864574 52864843 -136414711 - AluSx SINE Alu -14 298 1 1970 124 3 0 chr6 52866480 52866783 -136412771 - AluSx SINE Alu 0 304 1 791 241 98 15 chr6 52866829 52867094 -136412460 - MER102a DNA MER1_type -11 319 33 331 322 75 16 chr6 52867528 52867716 -136411838 - MIR SINE MIR -49 213 21 2186 106 27 3 chr6 52868258 52868551 -136411003 - AluSx SINE Alu -12 300 1 801 244 118 22 chr6 52869857 52870086 -136409468 + MIR SINE MIR 2 252 -10 222 356 78 0 chr6 52870088 52870172 -136409382 - L2 LINE L2 -12 3260 3169 2311 107 10 10 chr6 52870172 52870481 -136409073 - AluSx SINE Alu 0 312 4 2151 117 17 10 chr6 52870652 52870950 -136408604 + AluSx SINE Alu 1 300 -12 2386 77 0 7 chr6 52872430 52872729 -136406825 + AluSc SINE Alu 1 297 -12 1952 115 0 0 chr6 52873328 52873581 -136405973 + AluSq SINE Alu 1 253 -60 2489 84 0 3 chr6 52873701 52874010 -136405544 - AluSc SINE Alu -1 308 1 400 38 0 0 chr6 52874308 52874361 -136405193 - MADE1 DNA Mariner -1 79 27 1987 102 78 0 chr6 52874377 52874660 -136404894 + AluSp SINE Alu 1 305 -8 1095 167 0 17 chr6 52874694 52874874 -136404680 - AluJo/FRAM SINE Alu 0 312 136 1844 177 0 7 chr6 52874876 52875175 -136404379 - AluJb SINE Alu -15 297 1 352 267 30 36 chr6 52875453 52875599 -136403955 + MIR SINE MIR 7 152 -68 195 293 0 0 chr6 52875691 52875732 -136403822 + L2 LINE L2 3214 3254 -18 2395 71 17 3 chr6 52875841 52876137 -136403417 - AluY SINE Alu -11 300 1 1655 164 10 59 chr6 52876144 52876449 -136403105 - AluJb SINE Alu -22 290 1 274 237 43 115 chr6 52876458 52876614 -136402940 - MIR SINE MIR -62 146 50 1515 88 74 9 chr6 52876732 52876948 -136402606 + MER30 DNA MER1_type 1 230 0 2139 106 7 0 chr6 52877367 52877704 -136401850 - AluSx SINE Alu 0 339 1 1065 164 107 0 chr6 52877941 52878118 -136401436 + AluSg/x SINE Alu 87 282 -30 234 271 0 0 chr6 52878257 52878305 -136401249 + MIR3 SINE MIR 151 198 -10 199 333 0 14 chr6 52878381 52878450 -136401104 - MIR SINE MIR 0 262 195 * 2419 302 134 9 chr6 52878430 52878713 -136400841 - L2 LINE L2 -2 3311 3065 2273 104 0 3 chr6 52878713 52879010 -136400544 + AluSq SINE Alu 1 296 -17 2419 302 134 9 chr6 52879010 52880044 -136399510 - L2 LINE L2 -248 3065 1820 1027 237 272 21 chr6 52880083 52880498 -136399056 - MLT1G1 LTR MaLR -6 536 79 388 182 204 64 chr6 52880621 52880678 -136398876 - ORSL DNA AcHobo -24 251 203 1760 158 35 0 chr6 52880678 52880962 -136398592 + AluJb SINE Alu 1 294 -18 388 182 204 64 chr6 52880962 52880985 -136398569 - ORSL DNA AcHobo -72 203 185 2268 92 3 14 chr6 52880985 52881316 -136398238 + AluSx SINE Alu 1 312 0 388 182 204 64 chr6 52881316 52881454 -136398100 - ORSL DNA AcHobo -90 185 1 1447 298 148 24 chr6 52881457 52882280 -136397274 - L2 LINE L2 -1588 1726 801 921 181 36 0 chr6 52882280 52882446 -136397108 - MER5A DNA MER1_type -2 187 16 227 192 90 64 chr6 52882439 52882517 -136397037 - L2 LINE L2 -2516 798 719 * 2381 96 0 3 chr6 52882603 52882905 -136396649 + AluSq SINE Alu 1 301 -12 493 292 189 45 chr6 52882905 52883277 -136396277 - L2 LINE L2 -2562 752 323 2262 87 3 69 chr6 52883433 52883571 -136395983 + AluSx SINE Alu 3 149 -163 844 48 0 0 chr6 52883571 52883676 -136395878 + L1PA6 LINE L1 6050 6154 0 2262 87 3 69 chr6 52883676 52883869 -136395685 + AluSx SINE Alu 149 312 0 183 270 45 56 chr6 52884266 52884355 -136395199 + MIR SINE MIR 58 145 -63 2493 88 0 3 chr6 52884595 52884901 -136394653 - AluSg SINE Alu -5 305 1 271 324 7 28 chr6 52885420 52885562 -136393992 + CT-rich Low_complexity Low_complexity 3 141 0 398 311 49 30 chr6 52885727 52885891 -136393663 + L3 LINE CR1 1392 1558 -19 288 291 22 52 chr6 52886360 52886494 -136393060 - MIR SINE MIR -46 216 87 317 250 133 17 chr6 52886568 52886688 -136392866 + L1M4 LINE L1 4481 4614 -1532 403 252 1 56 chr6 52886774 52886937 -136392617 - L1MC3 LINE L1 0 8042 7664 291 197 141 0 chr6 52886982 52887053 -136392501 - L1MC4 LINE L1 -132 7910 7830 829 174 76 29 chr6 52887053 52887207 -136392347 - AluJb SINE Alu -13 299 135 2051 160 0 6 chr6 52887207 52887520 -136392034 - AluSx SINE Alu -1 311 1 829 174 76 29 chr6 52887520 52887537 -136392017 - AluJb SINE Alu -177 135 120 2383 94 0 3 chr6 52887540 52887876 -136391678 - AluSc SINE Alu 0 335 1 1701 209 184 6 chr6 52887915 52888388 -136391166 - L1MC4 LINE L1 -386 7656 7100 383 145 171 0 chr6 52889261 52889337 -136390217 + MIR SINE MIR 64 152 -110 345 266 49 155 chr6 52890514 52890863 -136388691 - L2 LINE L2 0 3272 2961 872 159 0 0 chr6 52890867 52890993 -136388561 + FLAM_C SINE Alu 1 126 -7 246 114 43 14 chr6 52890993 52891063 -136388491 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 589 198 69 180 chr6 52891522 52891616 -136387938 + L1M4 LINE L1 2800 2903 -3243 360 0 0 0 chr6 52891616 52891656 -136387898 + (CA)n Simple_repeat Simple_repeat 2 41 0 589 198 69 180 chr6 52891656 52891804 -136387750 + L1M4 LINE L1 2903 3066 -3080 1993 162 3 0 chr6 52891804 52892107 -136387447 + AluJo SINE Alu 1 304 -8 589 198 69 180 chr6 52892107 52892227 -136387327 + L1M4 LINE L1 3066 3198 -2948 2122 153 0 6 chr6 52892227 52892541 -136387013 + AluJb SINE Alu 1 312 0 2383 90 3 0 chr6 52892546 52892847 -136386707 + AluY SINE Alu 1 302 -9 589 198 69 180 chr6 52892847 52892997 -136386557 + L1M4 LINE L1 3202 3262 -2884 308 322 66 0 chr6 52893053 52893174 -136386380 - MIR SINE MIR -93 169 41 279 316 86 0 chr6 52893167 52893284 -136386270 - L2 LINE L2 -2 3270 3144 * 2342 109 3 0 chr6 52893333 52893637 -136385917 - AluSq SINE Alu -6 307 3 216 310 58 0 chr6 52894316 52894403 -136385151 + MIR3 SINE MIR 70 161 -47 286 202 156 64 chr6 52894534 52894643 -136384911 + MIR SINE MIR 101 219 -43 2474 58 7 10 chr6 52895560 52895868 -136383686 + AluY SINE Alu 2 308 -3 305 338 22 15 chr6 52896233 52896369 -136383185 + MIR3 SINE MIR 26 162 -46 2104 138 6 22 chr6 52896758 52897076 -136382478 + AluSq SINE Alu 1 313 0 282 116 0 0 chr6 52897078 52897121 -136382433 + (GGAA)n Simple_repeat Simple_repeat 3 45 0 2296 102 3 0 chr6 52897127 52897422 -136382132 + AluSp SINE Alu 1 296 -17 323 209 0 23 chr6 52897423 52897509 -136382045 + (CATA)n Simple_repeat Simple_repeat 3 86 0 1990 146 0 13 chr6 52897878 52898179 -136381375 - AluSx SINE Alu -15 297 1 2417 73 7 3 chr6 52898395 52898695 -136380859 - AluY SINE Alu -10 301 1 193 263 35 0 chr6 52898788 52898845 -136380709 + L3b LINE CR1 1340 1398 -185 2388 109 0 0 chr6 52899079 52899391 -136380163 - AluSx SINE Alu 0 312 1 679 221 8 0 chr6 52899394 52899521 -136380033 - FLAM_A SINE Alu -5 128 1 389 338 137 23 chr6 52899819 52900038 -136379516 + L2 LINE L2 3020 3263 -9 327 281 65 39 chr6 52901283 52901436 -136378118 - MIR3 SINE MIR -22 186 30 240 230 30 56 chr6 52902269 52902384 -136377170 + HAL1b LINE L1 1234 6105 -16 262 333 63 9 chr6 52902458 52902569 -136376985 + MIR SINE MIR 88 204 -58 363 316 149 0 chr6 52902574 52902742 -136376812 - MIR SINE MIR -7 255 63 633 144 157 33 chr6 52903008 52903161 -136376393 - MER58A DNA MER1_type -8 216 45 2389 87 0 0 chr6 52903216 52903548 -136376006 + AluSq SINE Alu 1 332 0 867 269 95 52 chr6 52903768 52904191 -136375363 - L2 LINE L2 0 3313 2873 2480 75 0 13 chr6 52904291 52904596 -136374958 + AluSx SINE Alu 7 307 -5 265 270 78 35 chr6 52905286 52905401 -136374153 - MIR3 SINE MIR -75 133 14 231 301 239 0 chr6 52905829 52905942 -136373612 + L2 LINE L2 3113 3252 -20 284 132 26 145 chr6 52906914 52906990 -136372564 + MER91B DNA MER1_type 1 67 -123 275 208 38 19 chr6 52907692 52907798 -136371756 + (TA)n Simple_repeat Simple_repeat 2 109 0 522 189 0 0 chr6 52907799 52907889 -136371665 - MLT1I LTR MaLR -8 401 312 850 203 16 57 chr6 52907889 52908000 -136371554 + MIR SINE MIR 78 179 -83 2413 93 0 7 chr6 52908000 52908302 -136371252 + AluSx SINE Alu 1 300 -12 850 203 16 57 chr6 52908302 52908382 -136371172 + MIR SINE MIR 179 261 -1 2325 84 0 0 chr6 52908651 52908935 -136370619 + AluSg SINE Alu 14 297 -13 220 267 86 29 chr6 52909253 52909358 -136370196 + L2 LINE L2 2996 3106 -207 2795 140 95 49 chr6 52909363 52909573 -136369981 + MLT2B3 LTR ERVL 1 200 -354 204 40 0 0 chr6 52909573 52909598 -136369956 + (TC)n Simple_repeat Simple_repeat 2 26 0 2795 140 95 49 chr6 52909598 52909914 -136369640 + MLT2B3 LTR ERVL 200 551 -3 2367 206 47 25 chr6 52909922 52909987 -136369567 - MLT1E LTR MaLR 0 593 531 2229 98 3 3 chr6 52909987 52910319 -136369235 - AluSp SINE Alu 0 332 1 2367 206 47 25 chr6 52910319 52910824 -136368730 - MLT1E LTR MaLR -62 531 9 922 259 138 16 chr6 52911020 52911449 -136368105 + LTR33 LTR ERVL 14 494 -27 2422 93 6 0 chr6 52911523 52911834 -136367720 + AluSq SINE Alu 1 313 0 2240 107 0 0 chr6 52911843 52912134 -136367420 + AluSq SINE Alu 1 291 -22 2088 66 35 52 chr6 52912139 52912452 -136367102 + AluY SINE Alu 2 309 0 642 266 104 92 chr6 52913510 52913610 -136365944 + HAL1 LINE L1 1 98 -2409 2451 78 0 0 chr6 52913610 52913906 -136365648 + AluSp SINE Alu 1 296 -17 2435 89 3 3 chr6 52913908 52914221 -136365333 + AluSp SINE Alu 1 313 0 642 266 104 92 chr6 52914221 52914715 -136364839 + HAL1 LINE L1 98 605 -1902 269 247 27 0 chr6 52914793 52914866 -136364688 + HAL1 LINE L1 839 913 -1594 1047 188 18 64 chr6 52915119 52915257 -136364297 + MER63A DNA MER1_type 3 129 -1559 2472 61 0 35 chr6 52915257 52915569 -136363985 + AluY SINE Alu 1 301 -10 1047 188 18 64 chr6 52915569 52915648 -136363906 + MER63A DNA MER1_type 129 210 0 2062 113 38 10 chr6 52915992 52916285 -136363269 - AluSx SINE Alu -7 305 5 227 29 0 0 chr6 52917505 52917540 -136362014 + Alu SINE Alu 261 295 -5 2388 58 0 4 chr6 52917540 52917818 -136361736 - AluSq SINE Alu -36 277 1 276 30 0 0 chr6 52917829 52917862 -136361692 + (A)n Simple_repeat Simple_repeat 1 33 0 184 222 0 0 chr6 52918027 52918063 -136361491 + L2 LINE L2 3180 3215 -98 184 288 64 48 chr6 52918173 52918298 -136361256 - L3 LINE CR1 -119 1458 1332 2267 118 3 0 chr6 52918738 52919043 -136360511 - AluSp SINE Alu -7 306 1 2039 148 0 10 chr6 52919661 52919959 -136359595 + AluJb SINE Alu 1 295 -17 603 251 73 21 chr6 52919983 52920174 -136359380 - MIR SINE MIR -40 222 22 180 224 41 0 chr6 52920517 52920566 -136358988 - L2 LINE L2 0 3272 3222 772 195 77 0 chr6 52920628 52920797 -136358757 - MER20 DNA MER1_type -8 211 30 271 322 17 8 chr6 52921207 52921325 -136358229 - MIR3 SINE MIR -21 187 68 240 252 27 0 chr6 52921327 52921401 -136358153 - MIR SINE MIR -102 106 30 1035 150 47 19 chr6 52921851 52922064 -136357490 + MER20 DNA MER1_type 1 219 0 859 136 8 0 chr6 52922261 52922393 -136357161 + FLAM_C SINE Alu 1 133 0 1868 131 3 59 chr6 52922405 52922711 -136356843 + AluSx SINE Alu 6 294 -18 467 327 7 0 chr6 52923101 52923254 -136356300 + MIR SINE MIR 29 182 -80 723 135 43 43 chr6 52923502 52923643 -136355911 + FLAM_C SINE Alu 2 142 -1 2214 98 24 7 chr6 52923654 52923951 -136355603 + AluSq SINE Alu 1 302 -11 654 229 33 7 chr6 52923951 52924104 -136355450 + MIR SINE MIR 59 215 -47 557 70 53 9 chr6 52924866 52924980 -136354574 + (TCTA)n Simple_repeat Simple_repeat 2 120 0 219 207 11 35 chr6 52924997 52925084 -136354470 + (TGGA)n Simple_repeat Simple_repeat 3 87 0 283 331 134 0 chr6 52925095 52925237 -136354317 + L2 LINE L2 2809 2969 -303 284 250 10 42 chr6 52925253 52925349 -136354205 + (TGGA)n Simple_repeat Simple_repeat 3 95 0 769 220 149 9 chr6 52925352 52925577 -136353977 + MIR SINE MIR 10 262 0 212 227 0 0 chr6 52925578 52925622 -136353932 + (TGGG)n Simple_repeat Simple_repeat 1 44 0 230 261 29 0 chr6 52926299 52926368 -136353186 + MIR SINE MIR 82 152 -56 837 238 99 9 chr6 52926586 52926809 -136352745 + MIR SINE MIR 10 252 -10 202 231 15 31 chr6 52927172 52927237 -136352317 + MIR SINE MIR 73 136 -126 231 245 0 0 chr6 52927734 52927787 -136351767 - L1ME LINE L1 -512 5658 5606 2264 125 0 0 chr6 52927995 52928299 -136351255 - AluSg SINE Alu -6 304 1 453 205 98 16 chr6 52928688 52928810 -136350744 - MIR3 SINE MIR -54 154 23 2338 81 3 0 chr6 52928834 52929140 -136350414 + AluSx SINE Alu 1 307 0 2060 138 10 13 chr6 52929249 52929561 -136349993 + AluSx SINE Alu 1 311 -1 27 0 0 0 chr6 52929661 52929688 -136349866 + AT_rich Low_complexity Low_complexity 1 27 0 2382 83 20 0 chr6 52929707 52930009 -136349545 - AluY SINE Alu -3 308 1 426 249 162 27 chr6 52930312 52930497 -136349057 - MIR SINE MIR -11 251 42 2292 113 3 0 chr6 52931025 52931326 -136348228 + AluSp SINE Alu 1 302 -11 184 321 18 0 chr6 52931738 52931794 -136347760 - MIR SINE MIR -86 176 120 2369 93 6 16 chr6 52931824 52932136 -136347418 - AluSp SINE Alu -4 309 1 2265 110 7 3 chr6 52932152 52932461 -136347093 - AluSx SINE Alu -2 310 1 397 133 17 0 chr6 52932585 52932645 -136346909 + AluS SINE Alu 6 66 -237 2141 115 3 10 chr6 52932739 52933034 -136346520 - AluSx SINE Alu -19 293 1 1780 185 10 10 chr6 52933078 52933381 -136346173 - AluSx SINE Alu -9 303 1 2271 92 13 35 chr6 52933466 52933782 -136345772 - AluSc SINE Alu 0 309 1 2529 80 6 0 chr6 52933797 52934108 -136345446 - AluSq SINE Alu 0 313 1 2247 108 0 0 chr6 52934438 52934725 -136344829 + AluSx SINE Alu 1 287 -25 2286 121 0 0 chr6 52934788 52935093 -136344461 + AluSx SINE Alu 6 310 -2 2659 54 0 13 chr6 52935156 52935470 -136344084 - AluY SINE Alu -1 310 1 2289 107 0 10 chr6 52935472 52935772 -136343782 - AluSq SINE Alu -15 298 2 614 256 20 74 chr6 52935772 52936069 -136343485 + L1MC4 LINE L1 7762 8042 0 2417 84 3 0 chr6 52936445 52936754 -136342800 + AluSg SINE Alu 1 310 0 26 0 0 0 chr6 52937269 52937295 -136342259 + GC_rich Low_complexity Low_complexity 1 26 0 669 251 53 16 chr6 52939106 52939293 -136340261 - MIR SINE MIR -12 250 57 423 158 0 69 chr6 52939293 52939405 -136340149 - L1MB8 LINE L1 -43 6123 6017 287 236 0 0 chr6 52939406 52939461 -136340093 - MIR SINE MIR -191 71 17 186 43 0 0 chr6 52939532 52939555 -136339999 + (CA)n Simple_repeat Simple_repeat 1 23 0 194 171 24 0 chr6 52940019 52940060 -136339494 + MIR SINE MIR 109 150 -112 1149 58 17 35 chr6 52940143 52940315 -136339239 + MER30 DNA MER1_type 4 172 -58 923 189 102 19 chr6 52940341 52940547 -136339007 + MER58A DNA MER1_type 1 223 -1 288 0 0 0 chr6 52941067 52941099 -136338455 + (TG)n Simple_repeat Simple_repeat 2 33 0 1779 173 27 10 chr6 52941365 52941666 -136337888 + AluSg SINE Alu 1 306 -4 716 164 0 0 chr6 52941667 52941783 -136337771 + AluJb SINE Alu 165 280 -32 194 288 14 41 chr6 52941805 52941878 -136337676 + MER5B DNA MER1_type 47 117 -61 2013 62 62 18 chr6 52941886 52942103 -136337451 - AluSc SINE Alu -24 285 52 266 0 0 29 chr6 52942103 52942138 -136337416 + (CCCCG)n Simple_repeat Simple_repeat 1 34 0 2013 62 62 18 chr6 52942138 52942193 -136337361 - AluSc SINE Alu -257 52 1 230 243 271 0 chr6 52942865 52942972 -136336582 - MER5A DNA MER1_type -8 181 46 197 138 0 0 chr6 52943646 52943675 -136335879 - MIR SINE MIR -111 151 123 415 131 0 75 chr6 52943814 52943921 -136335633 - L1PA11 LINE L1 0 6174 6076 790 219 142 5 chr6 52944034 52944239 -136335315 + MIR SINE MIR 27 259 -3 1730 72 0 40 chr6 52944936 52945159 -136334395 - AluSx SINE Alu -17 293 80 2511 80 0 0 chr6 52945159 52945458 -136334096 - AluSq SINE Alu -13 300 1 576 161 0 0 chr6 52945458 52945551 -136334003 - AluSx SINE Alu -218 94 2 438 314 58 18 chr6 52945560 52945786 -136333768 - MIR SINE MIR -12 250 16 26 0 0 0 chr6 52946100 52946126 -136333428 + GC_rich Low_complexity Low_complexity 1 26 0 317 345 73 0 chr6 52947495 52947672 -136331882 - L2 LINE L2 -3 3269 3080 830 221 109 31 chr6 52947778 52947809 -136331745 - MER5C DNA MER1_type -4 320 293 2336 95 0 0 chr6 52947809 52948126 -136331428 - AluSg SINE Alu 0 317 1 830 221 109 31 chr6 52948126 52948387 -136331167 - MER5C DNA MER1_type -31 293 4 506 326 67 47 chr6 52949723 52950125 -136329429 - L2 LINE L2 0 3313 2904 1972 126 43 7 chr6 52950230 52950531 -136329023 + AluJb SINE Alu 1 312 0 481 218 85 4 chr6 52951243 52951387 -136328167 - MER20 DNA MER1_type -93 126 3 186 280 13 80 chr6 52951479 52951554 -136328000 + MIR SINE MIR 30 99 -109 302 305 136 7 chr6 52951636 52951790 -136327764 - MIR SINE MIR -36 226 53 194 274 48 48 chr6 52951968 52952052 -136327502 + MIR SINE MIR 109 192 -70 2427 105 0 0 chr6 52952594 52952900 -136326654 - AluSx SINE Alu -6 306 1 635 294 142 27 chr6 52953177 52953514 -136326040 + L2 LINE L2 2848 3223 -49 401 301 133 0 chr6 52953517 52953660 -136325894 - MER5B DNA MER1_type -9 169 8 3480 182 31 7 chr6 52954509 52955195 -136324359 + L1MB5 LINE L1 5436 6141 -33 2519 91 0 0 chr6 52955195 52955546 -136324008 + L1PA14 LINE L1 5805 6155 -6 3480 182 31 7 chr6 52955546 52955561 -136323993 + L1MB5 LINE L1 6141 6154 -20 287 254 59 51 chr6 52955623 52955741 -136323813 - MER5A DNA MER1_type -45 144 26 400 257 204 37 chr6 52955804 52956044 -136323510 - MIR SINE MIR -1 261 2 337 265 316 0 chr6 52956141 52956277 -136323277 + MER5A DNA MER1_type 11 189 0 382 176 0 12 chr6 52956289 52956374 -136323180 - MER3 DNA MER1_type 0 209 126 1600 168 87 3 chr6 52956375 52956661 -136322893 - AluJb SINE Alu -2 310 1 998 174 0 0 chr6 52956702 52956863 -136322691 - FRAM SINE Alu -12 164 4 620 102 30 13 chr6 52956863 52956973 -136322581 - MER3 DNA MER1_type -103 106 2 314 198 12 25 chr6 52956980 52957061 -136322493 - MER20 DNA MER1_type 0 219 140 991 194 90 0 chr6 52957063 52957264 -136322290 + MER20 DNA MER1_type 1 219 0 938 271 88 34 chr6 52957628 52957979 -136321575 - L2 LINE L2 0 3313 2944 2620 58 0 7 chr6 52958081 52958389 -136321165 + AluY SINE Alu 1 306 -5 274 262 311 0 chr6 52958396 52958518 -136321036 - L2 LINE L2 -568 2746 2587 266 328 41 33 chr6 52959018 52959193 -136320361 + MIR SINE MIR 25 199 -63 180 274 197 0 chr6 52959337 52959454 -136320100 - L2 LINE L2 0 3272 3133 1048 252 180 19 chr6 52961053 52961469 -136318085 - L2 LINE L2 -2 3311 2829 355 283 106 30 chr6 52961485 52961722 -136317832 - L2 LINE L2 -193 3120 2866 1016 192 74 0 chr6 52961738 52961941 -136317613 + MER20 DNA MER1_type 2 219 0 987 183 58 151 chr6 52963106 52963418 -136316136 + LTR8 LTR ERV1 1 256 -435 1674 177 78 67 chr6 52963477 52963913 -136315641 + LTR8A LTR ERV1 287 727 0 1875 156 0 0 chr6 52963947 52964239 -136315315 - AluJb SINE Alu 0 306 15 255 250 110 52 chr6 52964382 52964470 -136315084 - L1ME4a LINE L1 -188 5933 5833 2388 104 0 0 chr6 52964470 52964767 -136314787 + AluSx SINE Alu 1 297 -15 255 250 110 52 chr6 52964767 52964814 -136314740 - L1ME4a LINE L1 -288 5833 5790 939 197 56 5 chr6 52965211 52965424 -136314130 + MER58A DNA MER1_type 1 224 0 799 298 85 27 chr6 52965516 52965694 -136313860 + MLT1J2 LTR MaLR 64 230 -220 812 199 66 22 chr6 52965694 52965920 -136313634 - MER106A DNA MER1_type 0 236 1 799 298 85 27 chr6 52965920 52966107 -136313447 + MLT1J2 LTR MaLR 230 450 0 1928 155 34 3 chr6 52966138 52966429 -136313125 + AluJb SINE Alu 1 300 -12 226 174 14 43 chr6 52966446 52966491 -136313063 + (TTATA)n Simple_repeat Simple_repeat 2 46 -22 2266 121 10 0 chr6 52966491 52966797 -136312757 - AluSx SINE Alu -3 309 1 226 174 14 43 chr6 52966797 52966820 -136312734 + (TTATA)n Simple_repeat Simple_repeat 46 68 0 372 303 85 94 chr6 52967022 52967105 -136312449 + HAL1 LINE L1 6 88 -2419 2204 92 7 16 chr6 52967105 52967408 -136312146 - AluSq SINE Alu -13 300 1 372 303 85 94 chr6 52967408 52967793 -136311761 + HAL1 LINE L1 88 470 -2037 408 277 324 24 chr6 52967834 52968130 -136311424 + HAL1 LINE L1 1740 2124 -383 550 224 59 118 chr6 52968142 52968446 -136311108 - MER102a DNA MER1_type -3 327 42 234 267 0 44 chr6 52968566 52968656 -136310898 + HAL1b LINE L1 745 830 -518 422 252 117 56 chr6 52968777 52969043 -136310511 + HAL1 LINE L1 2165 2446 -61 849 252 168 47 chr6 52969185 52969614 -136309940 - LTR33 LTR ERVL -39 482 2 2447 70 0 0 chr6 52969793 52970095 -136309459 - AluSg SINE Alu -8 302 1 204 333 0 0 chr6 52970663 52970723 -136308831 + L2 LINE L2 3189 3248 -24 5810 110 25 12 chr6 52970723 52972190 -136307364 + L1PA16 LINE L1 4356 5849 -317 1620 161 0 7 chr6 52972190 52972463 -136307091 + AluJb SINE Alu 1 271 -41 5810 110 25 12 chr6 52972463 52972786 -136306768 + L1PA16 LINE L1 5849 6166 0 228 261 24 93 chr6 52973868 52974039 -136305515 - MIR SINE MIR -54 154 40 320 293 0 0 chr6 52974061 52974136 -136305418 + L2 LINE L2 3237 3311 -2 374 326 53 8 chr6 52974158 52974290 -136305264 + MIR SINE MIR 104 241 -21 284 340 102 34 chr6 52974313 52974519 -136305035 - L2 LINE L2 -207 3106 2887 2034 137 0 9 chr6 52974592 52974907 -136304647 - AluSx SINE Alu 0 312 1 201 39 0 0 chr6 52974924 52974950 -136304604 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1610 138 0 0 chr6 52974950 52975203 -136304351 - L1PA13 LINE L1 -13 6150 5898 2089 105 3 0 chr6 52976307 52976601 -136302953 + AluY SINE Alu 1 295 -16 417 263 199 22 chr6 52976686 52976998 -136302556 + L1MC/D LINE L1 5255 5621 -2187 502 277 80 76 chr6 52977053 52977270 -136302284 + L1ME LINE L1 5486 5706 -415 1852 134 3 39 chr6 52977270 52977577 -136301977 - AluJb SINE Alu -16 296 1 502 277 80 76 chr6 52977577 52977673 -136301881 + L1ME LINE L1 5706 5800 -321 294 299 0 35 chr6 52977703 52977790 -136301764 + HAL1 LINE L1 1 84 -2423 181 115 0 0 chr6 52978324 52978350 -136301204 + MIR3 SINE MIR 171 196 -12 2109 118 0 0 chr6 52978543 52978840 -136300714 - AluSx SINE Alu -14 298 2 308 24 0 24 chr6 52980583 52980625 -136298929 + (CA)n Simple_repeat Simple_repeat 1 41 0 253 270 0 0 chr6 52980648 52980711 -136298843 - L1MC4 LINE L1 -1340 6702 6640 534 231 51 32 chr6 52981941 52982097 -136297457 - MIR SINE MIR -6 256 98 361 295 165 67 chr6 52982319 52982512 -136297042 + L2 LINE L2 3001 3232 -81 988 205 72 0 chr6 52982512 52982707 -136296847 + MER3 DNA MER1_type 1 209 0 361 295 165 67 chr6 52982707 52982798 -136296756 + L2 LINE L2 3232 3313 0 264 123 18 70 chr6 52983330 52983387 -136296167 + MIR SINE MIR 25 78 -130 190 356 35 9 chr6 52983442 52983557 -136295997 - L2 LINE L2 -5 3308 3191 311 318 51 62 chr6 52984081 52984355 -136295199 - L2 LINE L2 -85 3187 2917 562 278 34 17 chr6 52984363 52984535 -136295019 - MER5B DNA MER1_type 0 178 18 468 226 164 27 chr6 52984521 52984667 -136294887 + MER5A DNA MER1_type 18 183 -6 * 232 182 39 117 chr6 52985559 52985636 -136293918 + LTR67 LTR ERVL 81 151 -406 384 225 110 63 chr6 52985673 52985864 -136293690 + MLT1L LTR MaLR 407 606 -9 1156 141 0 0 chr6 52987200 52987363 -136292191 - FRAM SINE Alu -3 163 1 353 280 235 8 chr6 52987724 52987893 -136291661 + MIR SINE MIR 15 212 -50 492 283 9 0 chr6 52988812 52988925 -136290629 - MER81 DNA DNA 0 114 1 228 224 263 46 chr6 52988980 52989132 -136290422 - MER117 DNA MER1_type -2 195 11 716 289 206 16 chr6 52989146 52989169 -136290385 - L3 LINE CR1 -3 1574 1557 240 35 0 0 chr6 52989169 52989198 -136290356 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 716 289 206 16 chr6 52989198 52989538 -136290016 - L3 LINE CR1 -20 1557 1142 198 234 0 0 chr6 52990812 52990859 -136288695 + MIR SINE MIR 104 150 -112 508 302 186 0 chr6 52990905 52991077 -136288477 - MIR SINE MIR 0 262 59 840 289 101 11 chr6 52991331 52991608 -136287946 + L2 LINE L2 3010 3311 -2 186 43 0 0 chr6 52991918 52991941 -136287613 + (CA)n Simple_repeat Simple_repeat 1 23 0 417 169 14 0 chr6 52993295 52993366 -136286188 + MER81 DNA DNA 43 114 0 391 291 30 45 chr6 52993887 52994021 -136285533 - L2 LINE L2 0 3272 3141 247 250 12 24 chr6 52994063 52994147 -136285407 - L2 LINE L2 0 3313 3231 228 67 0 0 chr6 52994783 52994813 -136284741 + (CA)n Simple_repeat Simple_repeat 2 31 0 2255 109 3 0 chr6 52994840 52995151 -136284403 - AluSx SINE Alu 0 312 1 181 253 114 51 chr6 52995488 52995567 -136283987 + MIR SINE MIR 30 113 -95 483 260 33 53 chr6 52996823 52996973 -136282581 - MIR3 SINE MIR -47 161 15 207 69 0 0 chr6 52997561 52997590 -136281964 + (TC)n Simple_repeat Simple_repeat 2 30 0 237 33 0 0 chr6 52997590 52997620 -136281934 + (CA)n Simple_repeat Simple_repeat 1 30 0 1011 287 92 7 chr6 52997635 52998092 -136281462 + L1ME4a LINE L1 5380 5875 -246 661 248 128 90 chr6 52998188 52998600 -136280954 + MLT1J2 LTR MaLR 3 395 -51 1622 167 34 3 chr6 52998600 52998893 -136280661 - AluJb SINE Alu -10 302 1 661 248 128 90 chr6 52998893 52998939 -136280615 + MLT1J2 LTR MaLR 395 438 -8 233 298 75 44 chr6 52999357 52999585 -136279969 + L1ME4a LINE L1 5348 5582 -539 845 150 86 0 chr6 52999657 52999797 -136279757 + FRAM SINE Alu 23 174 -2 720 306 114 58 chr6 52999809 52999903 -136279651 + L1ME4a LINE L1 5636 5723 -398 1937 147 0 3 chr6 52999903 53000217 -136279337 + AluSq SINE Alu 1 313 0 720 306 114 58 chr6 53000217 53000569 -136278985 + L1ME4a LINE L1 5723 6107 -14 250 348 51 0 chr6 53001190 53001368 -136278186 - L1M4 LINE L1 -1227 4919 4733 306 350 63 0 chr6 53001953 53002176 -136277378 - L1M4 LINE L1 -2302 3844 3608 1514 198 23 65 chr6 53002850 53003167 -136276387 + MLT1A2 LTR MaLR 7 307 -67 2095 102 16 7 chr6 53003167 53003470 -136276084 - AluSq SINE Alu -7 306 1 1514 198 23 65 chr6 53003470 53003536 -136276018 + MLT1A2 LTR MaLR 307 374 0 2298 98 0 0 chr6 53003647 53003952 -136275602 + AluSg SINE Alu 1 305 -5 180 0 0 0 chr6 53005382 53005402 -136274152 + (T)n Simple_repeat Simple_repeat 1 20 0 2212 100 0 10 chr6 53006043 53006352 -136273202 + AluSc SINE Alu 2 307 -2 525 207 116 0 chr6 53006731 53006852 -136272702 - MIR SINE MIR 0 262 128 264 302 13 47 chr6 53007387 53007536 -136272018 + MLT1L LTR MaLR 439 582 -33 1648 199 25 14 chr6 53007604 53007961 -136271593 + MLT1A1 LTR MaLR 3 363 -2 206 162 54 54 chr6 53008001 53008075 -136271479 + T-rich Low_complexity Low_complexity 2 75 0 226 296 167 0 chr6 53008104 53008212 -136271342 + MIR3 SINE MIR 64 189 -19 721 227 77 50 chr6 53008348 53008805 -136270749 + LTR33 LTR ERVL 19 521 0 821 302 33 4 chr6 53009883 53010128 -136269426 + L2 LINE L2 2417 2668 -646 1539 178 162 80 chr6 53010137 53010563 -136268991 + MLT1C LTR MaLR 7 467 0 968 211 165 31 chr6 53010565 53011115 -136268439 + L2 LINE L2 2670 3307 -6 412 268 36 0 chr6 53011135 53011273 -136268281 - L2 LINE L2 -1293 2021 1879 552 254 158 10 chr6 53012129 53012329 -136267225 - MIR SINE MIR -9 253 21 199 268 141 42 chr6 53012322 53012464 -136267090 + L2 LINE L2 2553 2708 -606 * 190 289 48 48 chr6 53012815 53012898 -136266656 + L2 LINE L2 3146 3228 -44 404 242 189 33 chr6 53015571 53015724 -136263830 - MER5B DNA MER1_type 0 178 2 189 341 22 94 chr6 53015726 53015766 -136263788 - MIR3 SINE MIR -68 140 99 1918 132 20 0 chr6 53015766 53016070 -136263484 + AluSx SINE Alu 1 310 -2 189 341 22 94 chr6 53016070 53016167 -136263387 - MIR3 SINE MIR -109 99 13 237 134 90 90 chr6 53016907 53016974 -136262580 + L1ME4a LINE L1 5992 6058 -63 558 191 154 18 chr6 53017036 53017146 -136262408 + FLAM_A SINE Alu 1 125 -8 244 330 0 45 chr6 53017716 53017828 -136261726 - L2 LINE L2 -337 2977 2871 2225 105 0 0 chr6 53018498 53018804 -136260750 + AluSx SINE Alu 1 306 -6 294 284 0 25 chr6 53018964 53019045 -136260509 + LTR33 LTR ERVL 294 372 -149 206 359 28 9 chr6 53019315 53019421 -136260133 - L2 LINE L2 -222 3050 2943 440 310 30 50 chr6 53019490 53019690 -136259864 + MIR SINE MIR 16 211 -51 2138 94 29 10 chr6 53019849 53019984 -136259570 + AluSp SINE Alu 1 132 -181 2275 81 0 0 chr6 53019984 53020280 -136259274 + AluY SINE Alu 1 296 -15 2138 94 29 10 chr6 53020280 53020451 -136259103 + AluSp SINE Alu 132 313 0 2133 114 0 19 chr6 53020451 53020766 -136258788 + AluSc SINE Alu 1 309 0 711 220 133 9 chr6 53020921 53021200 -136258354 + LTR33 LTR ERVL 175 519 -2 1832 141 23 10 chr6 53021324 53021623 -136257931 + AluSx SINE Alu 1 303 -9 182 243 0 0 chr6 53021796 53021833 -136257721 + MIR SINE MIR 212 248 -14 * 234 204 23 0 chr6 53021803 53021847 -136257707 + L2 LINE L2 3264 3308 -5 322 359 42 0 chr6 53022120 53022262 -136257292 - L2 LINE L2 -1 3271 3124 2394 85 0 0 chr6 53023132 53023439 -136256115 - AluSc SINE Alu -2 307 1 2147 109 0 0 chr6 53023471 53023764 -136255790 - AluSq SINE Alu -20 293 1 2075 168 44 13 chr6 53023773 53024160 -136255394 - L1MB7 LINE L1 -23 6161 5763 655 226 132 13 chr6 53024469 53024628 -136254926 + MER45A DNA AcHobo 1 178 0 378 237 40 3 chr6 53025251 53025360 -136254194 - MIR3 SINE MIR -50 158 63 1676 157 3 14 chr6 53025433 53025727 -136253827 + AluJb SINE Alu 1 291 -21 250 254 18 0 chr6 53026079 53026134 -136253420 - L2 LINE L2 -1 3271 3216 * 981 257 152 21 chr6 53026132 53026149 -136253405 - L2 LINE L2 -18 3295 3282 1718 141 3 38 chr6 53026149 53026439 -136253115 - AluJb SINE Alu -32 280 1 981 257 152 21 chr6 53026439 53027025 -136252529 - L2 LINE L2 -31 3282 2625 395 314 69 0 chr6 53027009 53027168 -136252386 + MIR3 SINE MIR 30 199 -9 * 194 245 0 41 chr6 53027640 53027689 -136251865 + L2 LINE L2 3136 3182 -90 224 270 34 34 chr6 53027794 53027883 -136251671 + L2 LINE L2 3126 3214 -58 403 229 250 36 chr6 53028543 53028735 -136250819 - MIR SINE MIR 0 262 30 751 137 0 168 chr6 53029379 53029576 -136249978 - MER20 DNA MER1_type -55 164 1 1103 160 0 47 chr6 53029635 53029847 -136249707 + AluJo SINE Alu 99 300 -12 1727 248 65 76 chr6 53030380 53031147 -136248407 + L1MC4a LINE L1 5297 6055 -1753 1006 167 0 17 chr6 53031395 53031569 -136247985 - AluJb SINE Alu -7 305 135 1984 115 3 30 chr6 53031570 53031875 -136247679 - AluSq SINE Alu -16 297 1 828 110 76 0 chr6 53032674 53032792 -136246762 + AluSq/x SINE Alu 3 129 -183 259 77 26 0 chr6 53032803 53032842 -136246712 - AluSp SINE Alu -174 129 90 1047 142 6 0 chr6 53032901 53033070 -136246484 + AluSg/x SINE Alu 142 311 -1 887 168 24 67 chr6 53033460 53033668 -136245886 - MER20 DNA MER1_type -20 199 1 1390 186 80 0 chr6 53034394 53034686 -136244868 - AluJb SINE Alu 0 313 1 195 42 0 0 chr6 53035455 53035479 -136244075 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 226 260 160 27 chr6 53037613 53037763 -136241791 - MIR3 SINE MIR -6 202 33 376 285 97 27 chr6 53038616 53038802 -136240752 + L2 LINE L2 3084 3282 -31 204 97 0 0 chr6 53038818 53038849 -136240705 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 503 302 47 12 chr6 53038875 53039044 -136240510 + MIR SINE MIR 88 262 0 247 175 18 70 chr6 53039333 53039390 -136240164 - L2 LINE L2 -85 3187 3134 552 30 0 0 chr6 53039508 53039574 -136239980 + (CA)n Simple_repeat Simple_repeat 1 66 0 723 206 29 7 chr6 53039574 53039710 -136239844 + MER63A DNA MER1_type 67 205 -5 303 359 91 8 chr6 53039783 53040019 -136239535 - MIR SINE MIR -2 260 3 582 268 70 56 chr6 53040266 53040680 -136238874 + L1ME4a LINE L1 5698 6117 -4 274 267 111 11 chr6 53041115 53041205 -136238349 - MIR SINE MIR -65 143 45 21 57 0 0 chr6 53043107 53043142 -136236412 + AT_rich Low_complexity Low_complexity 1 35 0 567 246 58 64 chr6 53043170 53043327 -136236227 + MIR SINE MIR 2 155 -70 364 219 14 0 chr6 53044710 53044783 -136234771 + MIR SINE MIR 20 93 -169 220 330 64 21 chr6 53045232 53045326 -136234228 + L2 LINE L2 3216 3313 0 204 182 0 0 chr6 53045328 53045372 -136234182 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 215 281 93 2 chr6 53045545 53045640 -136233914 + MIR SINE MIR 33 135 -73 497 288 61 0 chr6 53047976 53048139 -136231415 - MIR SINE MIR -1 261 89 24 32 0 0 chr6 53048604 53048635 -136230919 + AT_rich Low_complexity Low_complexity 1 31 0 4707 221 59 65 chr6 53049249 53049339 -136230215 - L1MEc LINE L1 -947 5459 5370 2393 63 0 0 chr6 53049339 53049640 -136229914 - AluY SINE Alu -10 301 1 4707 221 59 65 chr6 53049640 53049852 -136229702 - L1MEc LINE L1 -1036 5370 5158 1392 176 3 61 chr6 53049852 53050164 -136229390 - AluJb SINE Alu -18 294 1 4707 221 59 65 chr6 53050164 53051317 -136228237 - L1MEc LINE L1 -1248 5158 4012 2278 91 0 0 chr6 53051317 53051615 -136227939 - AluSg SINE Alu -12 298 1 4707 221 59 65 chr6 53051615 53051859 -136227695 - L1MEc LINE L1 -2394 4012 3768 520 194 31 12 chr6 53051851 53052011 -136227543 - L1MEc LINE L1 -2946 3460 3298 * 438 127 0 0 chr6 53052023 53052094 -136227460 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 5211 83 5 251 chr6 53052094 53053591 -136225963 + SVA Other Other 3 1131 -255 243 0 0 0 chr6 53053591 53053618 -136225936 + (A)n Simple_repeat Simple_repeat 1 27 0 295 93 0 56 chr6 53053652 53053706 -136225848 - MLT1A1 LTR MaLR 0 365 315 4318 159 36 54 chr6 53053709 53053926 -136225628 - MLT1A1-int LTR MaLR -839 812 593 1669 166 0 11 chr6 53053926 53054230 -136225324 - AluJb SINE Alu 0 311 11 4318 159 36 54 chr6 53054230 53054918 -136224636 - MLT1A1-int LTR MaLR -1058 593 3 1407 192 56 53 chr6 53054919 53055242 -136224312 - MLT1A1 LTR MaLR -3 362 39 2765 244 70 14 chr6 53055254 53056170 -136223384 - L1MEc LINE L1 -3153 3253 2322 980 226 80 41 chr6 53056167 53056364 -136223190 - L1MEc LINE L1 -5022 1387 1199 * 2069 109 0 33 chr6 53056364 53056666 -136222888 + AluSg SINE Alu 1 292 -18 980 226 80 41 chr6 53056666 53056905 -136222649 - L1MEc LINE L1 -5210 1199 934 3398 92 5 2 chr6 53056944 53057391 -136222163 + MER41B-int LTR ERV1 5496 5943 -3 3673 121 7 2 chr6 53057392 53057936 -136221618 + MER41B LTR ERV1 1 547 -88 1957 206 57 28 chr6 53058473 53058910 -136220644 + MLT1C LTR MaLR 18 467 0 339 332 70 16 chr6 53059405 53059592 -136219962 + L2 LINE L2 2301 2497 -817 444 292 23 15 chr6 53060313 53060443 -136219111 - MIR SINE MIR -71 191 61 402 296 23 15 chr6 53060600 53060732 -136218822 + MIR SINE MIR 109 241 -21 1882 159 3 10 chr6 53060753 53061067 -136218487 + AluSx SINE Alu 1 312 0 625 289 40 20 chr6 53061283 53061484 -136218070 - MIR SINE MIR -45 217 13 294 305 140 6 chr6 53062177 53062341 -136217213 - MIR SINE MIR -47 215 30 183 219 133 105 chr6 53062805 53062910 -136216644 - MIR SINE MIR -79 129 22 337 197 33 0 chr6 53063440 53063501 -136216053 + L1MC4 LINE L1 6641 6703 -1339 303 356 0 0 chr6 53063495 53063582 -136215972 - L1MC4 LINE L1 -1339 6703 6617 * 2238 83 3 13 chr6 53063614 53063914 -136215640 - AluSx SINE Alu -11 301 5 420 290 35 35 chr6 53064060 53064229 -136215325 - L1M4 LINE L1 -1118 5028 4860 1627 155 44 0 chr6 53064246 53064537 -136215017 + AluJb SINE Alu 1 303 0 481 309 20 10 chr6 53064864 53065068 -136214486 - L1P LINE L1 -1908 4238 4033 250 258 61 15 chr6 53065228 53065294 -136214260 - L2 LINE L2 0 3272 3204 1472 184 3 27 chr6 53065393 53065686 -136213868 - AluJb SINE Alu -23 289 4 549 291 24 0 chr6 53066488 53066615 -136212939 - MIR SINE MIR -84 178 49 231 313 25 12 chr6 53067080 53067160 -136212394 + MIR3 SINE MIR 87 167 -41 2467 63 0 0 chr6 53067241 53067541 -136212013 - AluSp SINE Alu -13 300 1 540 92 0 13 chr6 53067561 53067637 -136211917 - U3 snRNA snRNA -142 75 1 237 264 0 42 chr6 53067765 53067837 -136211717 + Charlie4 DNA MER1_type 1888 1956 -5 1361 181 0 104 chr6 53067887 53068225 -136211329 + AluJo SINE Alu 5 307 -5 454 197 70 49 chr6 53068606 53068669 -136210885 + MER5A DNA MER1_type 45 105 -84 2290 79 0 0 chr6 53068669 53068961 -136210593 - AluSc SINE Alu -10 299 8 454 197 70 49 chr6 53068961 53069039 -136210515 + MER5A DNA MER1_type 105 189 0 420 292 106 80 chr6 53069054 53069403 -136210151 + L1M4 LINE L1 3104 3461 -2685 599 188 128 50 chr6 53069820 53070038 -136209516 + MER112 DNA MER1_type 1 235 -25 1345 273 114 34 chr6 53070043 53071219 -136208335 - L1MC/D LINE L1 -747 5399 4500 342 285 59 35 chr6 53071266 53071439 -136208115 - L1MC/D LINE L1 -1713 4433 4257 275 328 70 4 chr6 53071915 53072144 -136207410 - L1MC/D LINE L1 -2493 3653 3410 298 141 47 16 chr6 53073309 53073373 -136206181 - MER5A DNA MER1_type 0 189 124 287 156 31 0 chr6 53073413 53073477 -136206077 + CT-rich Low_complexity Low_complexity 2 67 0 2368 99 0 3 chr6 53073499 53073811 -136205743 - AluSq SINE Alu -2 311 1 270 193 105 0 chr6 53073819 53073876 -136205678 - MER5A DNA MER1_type -123 66 4 235 356 48 10 chr6 53075106 53075210 -136204344 - MIR3 SINE MIR -98 110 3 356 261 23 0 chr6 53075397 53075485 -136204069 + MIR3 SINE MIR 98 187 -21 22 70 0 0 chr6 53075759 53075802 -136203752 + AT_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr6 53075836 53075874 -136203680 + AT_rich Low_complexity Low_complexity 1 38 0 255 247 53 113 chr6 53076060 53076210 -136203344 - L3 LINE CR1 -44 1533 1393 810 265 23 30 chr6 53076227 53076491 -136203063 + MIR SINE MIR 1 262 0 481 190 20 177 chr6 53076507 53076732 -136202822 + MER112 DNA MER1_type 1 260 0 1787 156 11 3 chr6 53076732 53077014 -136202540 + AluSx SINE Alu 1 284 -28 236 51 0 26 chr6 53077014 53077053 -136202501 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 481 190 20 177 chr6 53077053 53077126 -136202428 + MER112 DNA MER1_type 170 253 -7 2061 123 0 22 chr6 53077126 53077444 -136202110 + AluSx SINE Alu 1 311 -1 1742 163 56 0 chr6 53077479 53077767 -136201787 + AluJb SINE Alu 1 304 -8 208 282 68 0 chr6 53077770 53077887 -136201667 - L3 LINE CR1 -219 1358 1234 2455 68 3 0 chr6 53078086 53078379 -136201175 - AluSp SINE Alu -19 294 1 780 268 41 47 chr6 53079174 53079544 -136200010 - L1ME3A LINE L1 -212 5950 5587 835 174 56 19 chr6 53079544 53079705 -136199849 + MER46B DNA MER2_type 1 42 -194 523 124 20 37 chr6 53079718 53079827 -136199727 + Tigger4(Zombi) DNA MER2_type 237 2731 0 467 298 61 25 chr6 53079828 53080026 -136199528 - L1ME3A LINE L1 -582 5584 5380 193 216 216 27 chr6 53080130 53080204 -136199350 + L2 LINE L2 3185 3272 0 474 248 25 86 chr6 53080538 53080736 -136198818 - MIR SINE MIR -57 205 20 2403 78 7 7 chr6 53080770 53081079 -136198475 - AluSg SINE Alu -1 309 1 226 328 0 0 chr6 53081784 53081845 -136197709 + L2 LINE L2 3193 3253 -60 1109 218 37 0 chr6 53081867 53082083 -136197471 + MER58A DNA MER1_type 1 224 0 780 170 2 0 chr6 53082244 53082411 -136197143 + AluJo SINE Alu 1 134 -178 1734 168 29 0 chr6 53082515 53082789 -136196765 - AluJo SINE Alu -30 282 1 2091 136 3 0 chr6 53082793 53083087 -136196467 - AluJb SINE Alu -16 296 2 25 0 0 0 chr6 53083093 53083118 -136196436 + AT_rich Low_complexity Low_complexity 1 25 0 647 244 191 38 chr6 53084911 53085435 -136194119 - L2 LINE L2 -7 3306 2720 2167 108 3 43 chr6 53085706 53085852 -136193702 + AluSx SINE Alu 1 151 -161 2257 81 7 13 chr6 53085852 53086150 -136193404 + AluSc SINE Alu 1 296 -13 2167 108 3 43 chr6 53086150 53086328 -136193226 + AluSx SINE Alu 151 312 0 207 287 0 32 chr6 53086506 53086600 -136192954 + GA-rich Low_complexity Low_complexity 4 94 0 806 264 72 8 chr6 53087234 53087469 -136192085 + MIR SINE MIR 3 252 -10 272 256 90 85 chr6 53087650 53087798 -136191756 + L1ME4a LINE L1 5676 5827 -294 2277 109 0 3 chr6 53087798 53088100 -136191454 + AluSx SINE Alu 1 301 -11 272 256 90 85 chr6 53088100 53088174 -136191380 + L1ME4a LINE L1 5827 5899 -222 333 311 21 129 chr6 53088174 53088601 -136190953 + L1MEc LINE L1 35 415 -5981 1587 155 17 48 chr6 53088974 53089265 -136190289 + AluJo SINE Alu 1 282 -30 791 285 87 60 chr6 53089291 53089908 -136189646 + L1MEc LINE L1 1072 1712 -4684 387 0 0 0 chr6 53089908 53089951 -136189603 + (CA)n Simple_repeat Simple_repeat 1 43 0 791 285 87 60 chr6 53089951 53090060 -136189494 + L1MEc LINE L1 1712 1817 -4579 2396 84 0 10 chr6 53090085 53090394 -136189160 + AluSq SINE Alu 1 306 -7 1128 151 0 6 chr6 53090624 53090790 -136188764 + AluJb SINE Alu 119 283 -29 475 227 21 21 chr6 53090790 53090931 -136188623 + L1ME4a LINE L1 5641 5781 -340 2132 94 0 24 chr6 53090932 53091242 -136188312 + AluSc SINE Alu 1 303 0 263 163 0 0 chr6 53091253 53091296 -136188258 + L2 LINE L2 3262 3304 -9 2383 82 0 3 chr6 53091327 53091618 -136187936 + AluY SINE Alu 3 292 -19 362 281 12 5 chr6 53091718 53091899 -136187655 - MIR SINE MIR -1 261 2 450 211 146 0 chr6 53091901 53092024 -136187530 + L1ME4a LINE L1 5963 6103 -18 306 0 0 0 chr6 53092053 53092087 -136187467 + (TA)n Simple_repeat Simple_repeat 2 35 0 227 229 0 0 chr6 53092369 53092417 -136187137 - MIR SINE MIR -78 130 83 38 22 0 0 chr6 53093313 53093358 -136186196 + AT_rich Low_complexity Low_complexity 1 45 0 259 330 62 0 chr6 53093660 53093772 -136185782 - L3 LINE CR1 -147 1430 1312 194 345 0 23 chr6 53093857 53093944 -136185610 + L2 LINE L2 2695 2779 -535 1179 117 0 0 chr6 53094075 53094255 -136185299 + (TA)n Simple_repeat Simple_repeat 1 180 0 2148 114 7 0 chr6 53094256 53094545 -136185009 - AluSc SINE Alu -18 291 1 39 38 0 38 chr6 53094545 53094624 -136184930 + AT_rich Low_complexity Low_complexity 1 76 0 1195 150 73 0 chr6 53094683 53094903 -136184651 - L1MA9 LINE L1 0 6312 6077 580 231 53 53 chr6 53095383 53095552 -136184002 + MER69A DNA AcHobo 1 169 -8 242 315 41 0 chr6 53095980 53096053 -136183501 + MIR SINE MIR 56 131 -131 184 294 0 15 chr6 53096107 53096175 -136183379 + MIR SINE MIR 140 206 -56 524 84 0 0 chr6 53096484 53096661 -136182893 + Alu SINE Alu 238 414 0 1482 241 59 88 chr6 53096681 53096881 -136182673 - L1M4 LINE L1 -816 5330 5126 2504 57 0 0 chr6 53096881 53097178 -136182376 - AluY SINE Alu -14 297 1 1482 241 59 88 chr6 53097178 53097356 -136182198 - L1M4 LINE L1 -1020 5126 4944 186 43 0 0 chr6 53097356 53097379 -136182175 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1522 190 3 55 chr6 53097388 53097699 -136181855 - AluJb SINE Alu -17 295 1 1482 241 59 88 chr6 53097699 53097982 -136181572 - L1M4 LINE L1 -1210 4936 4677 12524 203 16 9 chr6 53098082 53100763 -136178791 - L1 LINE L1 -911 5235 2535 603 183 58 0 chr6 53100731 53100851 -136178703 - L1PBa LINE L1 -5624 1239 1113 * 1157 168 5 23 chr6 53100831 53101045 -136178509 - L1PBa LINE L1 -6653 210 1 258 164 14 55 chr6 53101140 53101213 -136178341 - MSTA LTR MaLR -146 282 213 280 259 0 0 chr6 53101220 53101301 -136178253 + MLT1L LTR MaLR 523 603 -12 683 295 61 19 chr6 53101301 53101613 -136177941 - L1M4 LINE L1 -1968 4178 3854 812 91 64 0 chr6 53101646 53101756 -136177798 - FLAM_C SINE Alu -16 127 11 454 239 63 95 chr6 53102204 53102426 -136177128 - L1MC5 LINE L1 -397 7564 7350 905 212 25 89 chr6 53102456 53102781 -136176773 - L1MC5 LINE L1 -992 6969 6666 1010 113 6 0 chr6 53102915 53103074 -136176480 + L1P LINE L1 5254 5413 -738 481 236 36 0 chr6 53103109 53103219 -136176335 - L1MC5 LINE L1 -2189 5619 5506 5332 106 7 6 chr6 53103320 53104045 -136175509 + L1PB1 LINE L1 5423 6148 -3 802 259 73 52 chr6 53104055 53104126 -136175428 - MLT1L LTR MaLR -91 524 456 1995 86 65 3 chr6 53104126 53104418 -136175136 + AluSg SINE Alu 1 310 0 802 259 73 52 chr6 53104418 53104674 -136174880 - MLT1L LTR MaLR -159 456 190 432 262 16 8 chr6 53104673 53104799 -136174755 + MLT1I LTR MaLR 277 403 -6 * 1096 151 0 17 chr6 53104822 53105001 -136174553 + AluSq SINE Alu 135 310 -3 1541 167 60 20 chr6 53105004 53105304 -136174250 + AluJo SINE Alu 1 312 0 956 206 30 134 chr6 53105318 53105683 -136173871 - L1MC4a LINE L1 -1863 5945 5619 355 356 152 10 chr6 53105689 53105998 -136173556 + L1MC4a LINE L1 5427 5779 -2029 615 251 65 27 chr6 53106001 53106264 -136173290 + L1ME3A LINE L1 5663 5935 -235 250 281 35 9 chr6 53106517 53106631 -136172923 + L1MC4a LINE L1 5842 5958 -1850 2316 87 0 22 chr6 53106789 53107066 -136172488 + AluSg SINE Alu 6 277 -33 243 0 0 0 chr6 53107066 53107093 -136172461 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2316 87 0 22 chr6 53107093 53107127 -136172427 + AluSg SINE Alu 277 310 0 1416 209 110 56 chr6 53107179 53107534 -136172020 + MLT1A2 LTR MaLR 1 374 0 296 237 105 40 chr6 53107899 53108053 -136171501 - MLT1K LTR MaLR -50 565 375 1468 200 0 0 chr6 53108979 53109229 -136170325 + AluJo SINE Alu 1 250 -62 2223 109 0 3 chr6 53109280 53109574 -136169980 - AluSq SINE Alu -20 293 1 198 417 34 23 chr6 53109632 53109807 -136169747 + L3b LINE CR1 1391 1567 -16 2242 107 0 13 chr6 53109816 53110133 -136169421 - AluSq SINE Alu 0 313 1 21 0 0 0 chr6 53110769 53110790 -136168764 + AT_rich Low_complexity Low_complexity 1 21 0 349 226 65 0 chr6 53110791 53110884 -136168670 - L1ME4a LINE L1 -3 6118 6020 2252 104 0 32 chr6 53110905 53111214 -136168340 + AluSx SINE Alu 1 299 -13 832 110 125 7 chr6 53111472 53111608 -136167946 + AluSp/q SINE Alu 156 307 -6 21 0 0 0 chr6 53111615 53111636 -136167918 + AT_rich Low_complexity Low_complexity 1 21 0 1185 239 23 55 chr6 53111696 53111759 -136167795 - MER46C DNA MER2_type -1 337 274 1646 181 7 4 chr6 53111759 53112036 -136167518 + AluJo SINE Alu 1 278 -34 387 0 0 0 chr6 53112036 53112079 -136167475 + (CA)n Simple_repeat Simple_repeat 2 44 0 1185 239 23 55 chr6 53112079 53112362 -136167192 - MER46C DNA MER2_type -62 276 1 766 285 32 102 chr6 53113279 53113608 -136165946 - MLT1J LTR MaLR -45 466 182 2221 109 0 0 chr6 53113608 53113902 -136165652 - AluSx SINE Alu -18 294 1 766 285 32 102 chr6 53113902 53114070 -136165484 - MLT1J LTR MaLR -329 182 4 826 196 39 0 chr6 53115579 53115732 -136163822 + FRAM SINE Alu 11 169 -7 265 311 14 0 chr6 53115736 53115810 -136163744 - MER91 DNA MER1_type -74 122 48 2041 100 40 17 chr6 53115890 53116190 -136163364 + AluSg SINE Alu 1 307 -3 1204 246 28 47 chr6 53116495 53116735 -136162819 - LTR16C LTR ERVL 0 491 257 2015 137 0 3 chr6 53116735 53117027 -136162527 + AluSx SINE Alu 1 291 -21 1204 246 28 47 chr6 53117027 53117107 -136162447 - LTR16C LTR ERVL -234 257 177 721 262 45 23 chr6 53118022 53118195 -136161359 + MIR SINE MIR 36 217 -45 1257 189 68 108 chr6 53118195 53118575 -136160979 - MLT1A1 LTR MaLR 0 365 1 721 262 45 23 chr6 53118575 53118622 -136160932 + MIR SINE MIR 217 261 -1 201 280 0 86 chr6 53118691 53118784 -136160770 + MIR SINE MIR 49 133 -129 2238 228 66 50 chr6 53118801 53119162 -136160392 - MER20B DNA MER1_type -42 741 387 315 0 0 0 chr6 53119162 53119197 -136160357 + (CAA)n Simple_repeat Simple_repeat 1 35 0 2238 228 66 50 chr6 53119197 53119562 -136159992 - MER20B DNA MER1_type -396 387 3 732 305 96 36 chr6 53119903 53120439 -136159115 + L1ME4a LINE L1 5362 5948 -222 2181 116 0 7 chr6 53120753 53121056 -136158498 - AluSg SINE Alu -9 301 1 1131 127 16 32 chr6 53121157 53121334 -136158220 - MER5A DNA MER1_type -1 188 13 2271 109 0 0 chr6 53121334 53121638 -136157916 - AluSx SINE Alu -8 304 1 1131 127 16 32 chr6 53121638 53121649 -136157905 - MER5A DNA MER1_type -176 13 3 277 260 8 41 chr6 53121920 53121980 -136157574 + L1ME4a LINE L1 5991 6047 -74 1457 191 13 26 chr6 53121980 53122283 -136157271 + AluJb SINE Alu 1 299 -13 277 260 8 41 chr6 53122283 53122345 -136157209 + L1ME4a LINE L1 6047 6109 -12 1863 134 3 26 chr6 53122511 53122817 -136156737 + AluSx SINE Alu 1 299 -13 2135 70 0 0 chr6 53123512 53123782 -136155772 + AluY SINE Alu 15 284 -27 545 80 80 0 chr6 53123818 53123893 -136155661 - AluSg1 SINE Alu -227 82 2 198 0 0 0 chr6 53123906 53123928 -136155626 + (A)n Simple_repeat Simple_repeat 1 22 0 419 161 99 0 chr6 53123935 53124016 -136155538 + L1MEc LINE L1 35 123 -6273 431 136 0 0 chr6 53174150 53174209 -136105345 - AluS SINE Alu -248 62 4 33 43 0 0 chr6 53174576 53174623 -136104931 + AT_rich Low_complexity Low_complexity 1 47 0 2486 68 3 19 chr6 53174957 53175266 -136104288 + AluY SINE Alu 1 304 -7 196 157 59 0 chr6 53176403 53176454 -136103100 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 2221 123 0 0 chr6 53177451 53177759 -136101795 - AluSx SINE Alu -4 308 1 317 307 113 13 chr6 53177789 53177939 -136101615 - MIR SINE MIR -87 175 11 742 161 0 0 chr6 53178211 53178359 -136101195 + FLAM_A SINE Alu 5 152 0 258 207 124 90 chr6 53178547 53178692 -136100862 + L1MEc LINE L1 683 832 -5373 481 231 51 19 chr6 53178743 53178899 -136100655 + LTR65 LTR ERV1 3 163 -506 281 340 43 0 chr6 53179080 53179221 -136100333 + LTR65 LTR ERV1 517 663 -6 761 209 87 20 chr6 53179375 53179571 -136099983 - MIR SINE MIR -43 219 11 640 253 55 51 chr6 53179665 53179780 -136099774 - L2 LINE L2 0 3313 3200 2352 99 0 0 chr6 53179780 53180074 -136099480 - AluSx SINE Alu -17 295 2 640 253 55 51 chr6 53180074 53180195 -136099359 - L2 LINE L2 -113 3200 3076 1038 150 24 0 chr6 53180199 53180366 -136099188 + AluJb SINE Alu 137 307 -5 2569 219 141 33 chr6 53180368 53180595 -136098959 - L2 LINE L2 -227 3086 2885 297 0 0 0 chr6 53180595 53180628 -136098926 + (TG)n Simple_repeat Simple_repeat 1 33 0 2569 219 141 33 chr6 53180628 53181374 -136098180 - L2 LINE L2 -428 2885 2006 280 236 71 57 chr6 53181374 53181623 -136097931 + L1MEc LINE L1 1020 1301 -4904 733 219 59 12 chr6 53181642 53181811 -136097743 - LTR16A LTR ERVL -7 443 267 606 204 0 0 chr6 53181816 53181914 -136097640 + MER81 DNA DNA 17 114 0 618 309 0 58 chr6 53181914 53182137 -136097417 - LTR16A LTR ERVL -174 276 67 5571 89 16 34 chr6 53182232 53183056 -136096498 + L1PB1 LINE L1 5342 6150 -1 1805 225 21 29 chr6 53183049 53183525 -136096029 + L1MEc LINE L1 671 1142 -5254 * 417 284 13 39 chr6 53183501 53183656 -136095898 + L1MEc LINE L1 2492 2642 -3573 * 29 47 0 0 chr6 53183668 53183711 -136095843 + AT_rich Low_complexity Low_complexity 1 43 0 279 263 53 0 chr6 53183774 53183850 -136095704 + L2 LINE L2 3154 3233 -39 3757 174 23 8 chr6 53184665 53185374 -136094180 - L1MB8 LINE L1 0 6178 5460 1796 171 0 55 chr6 53185431 53185608 -136093946 - AluJo SINE Alu -3 309 157 2037 112 3 43 chr6 53185608 53185913 -136093641 - AluSc SINE Alu -11 298 6 1796 171 0 55 chr6 53185913 53186062 -136093492 - AluJo SINE Alu -155 157 1 1159 239 83 77 chr6 53186185 53186737 -136092817 - MLT1H1 LTR MaLR 0 555 3 889 211 12 0 chr6 53186777 53186938 -136092616 + AluJb SINE Alu 127 289 -23 1148 163 0 0 chr6 53188094 53188266 -136091288 + FAM SINE Alu 4 175 0 1948 171 0 7 chr6 53188707 53189005 -136090549 + AluSx SINE Alu 1 296 -16 712 181 15 15 chr6 53189554 53189687 -136089867 - FLAM_A SINE Alu 0 133 1 62 14 0 0 chr6 53190002 53190071 -136089483 + AT_rich Low_complexity Low_complexity 1 69 0 255 225 46 35 chr6 53190075 53190248 -136089306 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 203 205 49 25 chr6 53190262 53190384 -136089170 + (TTATA)n Simple_repeat Simple_repeat 5 129 0 238 205 51 26 chr6 53190398 53190554 -136089000 + (TTATA)n Simple_repeat Simple_repeat 5 164 0 1799 125 92 21 chr6 53190819 53191155 -136088399 - THE1C LTR MaLR -15 360 1 358 233 90 8 chr6 53191262 53191405 -136088149 - MLT1L LTR MaLR -13 602 340 231 310 0 0 chr6 53191920 53191978 -136087576 - MER91 DNA MER1_type -81 59 2 256 211 114 24 chr6 53191985 53192108 -136087446 - L1ME4a LINE L1 -63 6058 5925 28 61 0 0 chr6 53192128 53192177 -136087377 + AT_rich Low_complexity Low_complexity 1 49 0 2022 146 0 7 chr6 53192196 53192505 -136087049 - AluSx SINE Alu -5 307 1 1824 175 3 0 chr6 53192581 53192867 -136086687 + AluJb SINE Alu 1 287 -25 539 169 77 15 chr6 53192901 53193031 -136086523 + LTR33 LTR ERVL 8 145 -376 284 179 167 36 chr6 53193281 53193365 -136086189 + MLT1I LTR MaLR 278 372 -37 292 235 0 37 chr6 53193577 53193658 -136085896 + LTR33 LTR ERVL 442 519 -2 732 203 28 0 chr6 53193666 53193809 -136085745 - MIR SINE MIR -77 185 39 21 0 0 0 chr6 53193906 53193927 -136085627 + AT_rich Low_complexity Low_complexity 1 21 0 273 254 100 9 chr6 53193958 53194068 -136085486 - L1ME4a LINE L1 -394 5727 5608 1328 167 5 0 chr6 53194273 53194488 -136085066 - AluJb SINE Alu -12 300 85 380 208 88 40 chr6 53194610 53194735 -136084819 - L1ME4a LINE L1 -194 5927 5797 2069 152 14 23 chr6 53194771 53195120 -136084434 - MER7A DNA MER2_type 0 346 3 2172 109 3 0 chr6 53195129 53195454 -136084100 - AluSx SINE Alu 0 326 1 343 302 157 22 chr6 53195541 53196037 -136083517 - L1ME4a LINE L1 -988 5158 4596 2408 78 3 0 chr6 53196112 53196407 -136083147 + AluSq SINE Alu 1 296 -17 466 250 0 0 chr6 53196567 53196655 -136082899 + MER81 DNA DNA 27 114 0 580 252 150 10 chr6 53197390 53197684 -136081870 - L1ME4a LINE L1 -32 6089 5755 570 277 55 42 chr6 53197790 53197891 -136081663 + MIR SINE MIR 12 110 -152 1815 118 3 51 chr6 53197891 53198229 -136081325 - AluJo SINE Alu 0 324 1 570 277 55 42 chr6 53198229 53198364 -136081190 + MIR SINE MIR 110 252 -10 500 178 20 0 chr6 53198916 53199017 -136080537 - MER5B DNA MER1_type -74 104 2 749 116 132 0 chr6 53199038 53199159 -136080395 + AluJo SINE Alu 1 137 -175 21 57 0 0 chr6 53199180 53199215 -136080339 + AT_rich Low_complexity Low_complexity 1 35 0 2581 45 0 26 chr6 53199215 53199527 -136080027 + AluY SINE Alu 1 304 -7 923 175 31 14 chr6 53199750 53199973 -136079581 - Charlie5 DNA MER1_type -49 2563 2337 2085 132 13 7 chr6 53199998 53200301 -136079253 + AluSx SINE Alu 1 305 -7 1887 136 49 0 chr6 53200492 53200779 -136078775 - AluJb SINE Alu -11 301 1 455 233 45 34 chr6 53201026 53201202 -136078352 - MER5B DNA MER1_type 0 178 1 497 247 156 0 chr6 53201210 53201364 -136078190 - MER5A DNA MER1_type 0 189 12 242 339 10 26 chr6 53201380 53201572 -136077982 - L1ME4a LINE L1 -165 5956 5768 256 231 0 0 chr6 53201835 53201887 -136077667 - MIR SINE MIR -83 179 128 2197 115 0 31 chr6 53202065 53202387 -136077167 - AluSq SINE Alu -1 312 1 530 267 72 32 chr6 53203691 53203942 -136075612 - MIR SINE MIR 0 262 2 227 244 0 0 chr6 53204579 53204620 -136074934 + polypyrimidine Low_complexity Low_complexity 1 41 0 245 306 25 31 chr6 53204817 53204977 -136074577 + L1MC/D LINE L1 3577 3735 -2411 2272 93 21 0 chr6 53204986 53205276 -136074278 + AluSx SINE Alu 1 296 -16 529 267 44 59 chr6 53205289 53205630 -136073924 + L1MC/D LINE L1 3914 4249 -1897 1619 225 120 100 chr6 53205692 53205875 -136073679 + HAL1 LINE L1 181 359 -2148 1608 201 14 0 chr6 53205875 53206153 -136073401 + AluJo SINE Alu 1 282 -30 1619 225 120 100 chr6 53206153 53206335 -136073219 + HAL1 LINE L1 359 536 -1971 2251 114 0 10 chr6 53206335 53206619 -136072935 + AluSg SINE Alu 2 283 -198 240 35 0 0 chr6 53206619 53206648 -136072906 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 2251 114 0 10 chr6 53206648 53206846 -136072708 + AluSg SINE Alu 283 481 0 1619 225 120 100 chr6 53206846 53207236 -136072318 + HAL1 LINE L1 536 954 -1553 225 147 0 0 chr6 53207270 53207304 -136072250 - MLT2B1 LTR ERVL -8 406 373 246 128 0 0 chr6 53207306 53207345 -136072209 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 189 0 0 0 chr6 53207371 53207392 -136072162 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 1387 181 77 67 chr6 53207402 53207811 -136071743 - MLT2B1 LTR ERVL -43 371 1 2608 244 81 40 chr6 53207811 53208763 -136070791 + HAL1 LINE L1 974 1974 -533 2505 43 0 23 chr6 53208763 53209065 -136070489 + AluY SINE Alu 1 295 -16 2608 244 81 40 chr6 53209065 53209160 -136070394 + HAL1 LINE L1 1974 2064 -443 312 321 83 36 chr6 53209171 53209332 -136070222 + L1MC/D LINE L1 4735 4887 -1259 2816 26 0 0 chr6 53209332 53209643 -136069911 - AluY SINE Alu 0 311 1 312 321 83 36 chr6 53209643 53209783 -136069771 + L1MC/D LINE L1 4887 5050 -1096 754 291 58 56 chr6 53209982 53210411 -136069143 + L1MC/D LINE L1 5267 5694 -477 2047 121 3 0 chr6 53210675 53210985 -136068569 - AluSx SINE Alu 0 311 1 782 191 228 56 chr6 53211050 53211175 -136068379 - MER96B DNA MER1_type 0 417 315 1924 151 11 0 chr6 53211175 53211459 -136068095 - AluJo SINE Alu -21 291 5 782 191 228 56 chr6 53211459 53211688 -136067866 - MER96B DNA MER1_type -102 315 2 212 59 29 0 chr6 53212167 53212201 -136067353 + (TG)n Simple_repeat Simple_repeat 2 36 0 716 175 0 0 chr6 53212201 53212321 -136067233 - AluSx SINE Alu -16 294 175 905 104 0 0 chr6 53212322 53212437 -136067117 - AluSx SINE Alu -197 115 1 726 190 7 7 chr6 53212501 53212643 -136066911 - MIR SINE MIR -69 193 52 2424 88 3 0 chr6 53212695 53213000 -136066554 + AluSq SINE Alu 1 306 -7 1092 154 5 0 chr6 53213094 53213282 -136066272 - MER53 DNA DNA 0 189 1 267 203 162 0 chr6 53213294 53213368 -136066186 + HERVL LTR ERVL 2586 2671 -2983 2116 125 0 32 chr6 53215557 53215868 -136063686 - AluSx SINE Alu -11 301 1 2589 61 0 13 chr6 53216200 53216512 -136063042 + AluY SINE Alu 1 308 -3 3552 242 64 36 chr6 53216706 53217870 -136061684 + HAL1 LINE L1 630 1826 -681 1383 132 44 37 chr6 53217916 53218107 -136061447 - MER69 DNA AcHobo 0 2526 2331 2268 71 50 3 chr6 53218107 53218390 -136061164 - AluSq SINE Alu -17 296 1 1383 132 44 37 chr6 53218390 53218470 -136061084 - MER69 DNA AcHobo -195 2331 2253 1745 147 57 0 chr6 53218580 53218859 -136060695 + AluJb SINE Alu 1 295 -17 624 169 154 0 chr6 53218872 53219002 -136060552 - FRAM SINE Alu -11 165 16 1128 227 92 1 chr6 53219032 53219386 -136060168 - MER69 DNA AcHobo -2109 417 1 307 235 59 0 chr6 53219388 53219456 -136060098 + HAL1 LINE L1 1843 1914 -593 1085 139 12 0 chr6 53219464 53219630 -136059924 + AluSg/x SINE Alu 127 294 -16 474 18 0 0 chr6 53219631 53219686 -136059868 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 1872 151 7 7 chr6 53219700 53219992 -136059562 - AluJb SINE Alu -20 292 1 21 71 0 0 chr6 53220138 53220180 -136059374 + AT_rich Low_complexity Low_complexity 1 42 0 700 191 84 49 chr6 53220394 53220619 -136058935 + pTR5 LTR ERV1 742 974 -1464 3261 141 65 42 chr6 53220727 53221295 -136058259 + LTR12 LTR ERV1 1 581 -133 1573 181 7 4 chr6 53221393 53221664 -136057890 + AluSq SINE Alu 1 272 -41 189 0 0 0 chr6 53221670 53221691 -136057863 + (GA)n Simple_repeat Simple_repeat 2 22 0 1868 232 85 25 chr6 53221927 53222069 -136057485 - MLT1H LTR MaLR 0 549 417 3366 80 105 110 chr6 53222069 53222706 -136056848 + MER51A LTR ERV1 1 634 0 1868 232 85 25 chr6 53222706 53223080 -136056474 - MLT1H LTR MaLR -132 417 2 212 275 0 50 chr6 53223081 53223120 -136056434 + MIR SINE MIR 85 120 -142 2184 102 41 3 chr6 53223120 53223415 -136056139 - AluSx SINE Alu -6 306 1 212 275 0 50 chr6 53223415 53223455 -136056099 + MIR SINE MIR 120 160 -102 1010 306 40 49 chr6 53223555 53223833 -136055721 + L2 LINE L2 2886 3160 -153 1996 159 0 7 chr6 53223833 53224129 -136055425 - AluJb SINE Alu -18 294 1 1010 306 40 49 chr6 53224129 53224278 -136055276 + L2 LINE L2 3160 3309 -4 1700 184 11 0 chr6 53224656 53224962 -136054592 - AluJb SINE Alu 0 309 1 663 211 113 19 chr6 53225016 53225272 -136054282 + HAL1 LINE L1 1224 1503 -1004 456 274 51 0 chr6 53225377 53225494 -136054060 + L2 LINE L2 3191 3313 0 2242 122 6 0 chr6 53225532 53225843 -136053711 - AluSq SINE Alu 0 313 1 1935 144 0 46 chr6 53225925 53226252 -136053302 + AluSx SINE Alu 1 312 0 186 43 0 0 chr6 53226296 53226319 -136053235 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1645 247 170 30 chr6 53226322 53226613 -136052941 - HAL1 LINE L1 -1468 1039 790 2286 89 3 0 chr6 53226613 53226895 -136052659 - AluSq SINE Alu -14 299 17 1645 247 170 30 chr6 53226895 53227416 -136052138 - HAL1 LINE L1 -1717 790 113 686 301 26 9 chr6 53227465 53227694 -136051860 + L1MEd LINE L1 243 475 -5644 1410 122 0 0 chr6 53227698 53227879 -136051675 + AluSx SINE Alu 1 181 -131 1032 135 0 0 chr6 53227906 53228047 -136051507 + AluSg/x SINE Alu 153 293 -17 1813 170 0 10 chr6 53228315 53228609 -136050945 - AluJo SINE Alu -21 291 1 1880 140 19 7 chr6 53229387 53229694 -136049860 - AluJo SINE Alu -1 311 1 219 200 67 0 chr6 53229943 53229988 -136049566 - L2 LINE L2 0 3313 3266 343 200 0 0 chr6 53229998 53230063 -136049491 - L2 LINE L2 -24 3289 3225 2284 94 3 0 chr6 53231891 53232199 -136047355 - AluSp SINE Alu -4 309 1 2250 86 10 10 chr6 53232726 53233027 -136046527 - AluSx SINE Alu -11 301 1 721 153 0 40 chr6 53233065 53233189 -136046365 - FRAM SINE Alu -11 165 47 2141 93 0 4 chr6 53233789 53234067 -136045487 + AluSc SINE Alu 2 278 -31 1525 186 47 7 chr6 53234093 53234213 -136045341 + AluJo SINE Alu 1 115 -197 183 42 0 0 chr6 53234213 53234237 -136045317 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 1525 186 47 7 chr6 53234237 53234395 -136045159 + AluJo SINE Alu 115 290 -22 3517 165 59 36 chr6 53234474 53234787 -136044767 - L1MB8 LINE L1 0 6178 5874 2528 65 0 3 chr6 53234787 53235093 -136044461 + AluY SINE Alu 1 305 -6 3517 165 59 36 chr6 53235093 53235117 -136044437 - L1MB8 LINE L1 -304 5874 5852 1112 136 113 5 chr6 53235117 53235330 -136044224 - MER46A DNA MER2_type 0 236 1 3517 165 59 36 chr6 53235330 53235893 -136043661 - L1MB8 LINE L1 -326 5852 5258 2231 107 0 0 chr6 53236579 53236870 -136042684 - AluSx SINE Alu -19 293 3 1968 154 3 6 chr6 53237013 53237324 -136042230 - AluJb SINE Alu -2 310 1 1337 33 0 0 chr6 53237455 53237606 -136041948 + AluY SINE Alu 155 305 -6 2086 89 22 4 chr6 53237825 53238096 -136041458 + AluSx SINE Alu 27 302 -10 201 39 0 0 chr6 53238387 53238413 -136041141 + (TTTTTA)n Simple_repeat Simple_repeat 4 29 0 25 0 0 0 chr6 53238797 53238822 -136040732 + AT_rich Low_complexity Low_complexity 1 25 0 640 94 254 36 chr6 53238864 53239002 -136040552 - L1PA16 LINE L1 -1 6165 5998 1804 123 54 4 chr6 53239055 53239316 -136040238 - AluSx SINE Alu -10 302 29 876 261 53 0 chr6 53240641 53240886 -136038668 - L1MC4 LINE L1 -1039 7003 6746 2255 108 3 10 chr6 53241030 53241337 -136038217 - AluSx SINE Alu -7 305 1 1884 195 343 40 chr6 53241822 53242752 -136036802 - L1MC4 LINE L1 -372 7670 6459 2107 124 30 0 chr6 53242862 53243160 -136036394 - AluSx SINE Alu -5 307 1 249 267 0 27 chr6 53243245 53243320 -136036234 - MER77 LTR ERV1 -467 138 66 253 341 11 0 chr6 53243327 53243415 -136036139 + MIR SINE MIR 162 250 -12 798 139 15 0 chr6 53244268 53244405 -136035149 - L1MA4 LINE L1 -6 6294 6156 1257 96 54 0 chr6 53245132 53245298 -136034256 + AluSp SINE Alu 113 287 -26 336 24 0 0 chr6 53245298 53245339 -136034215 + (CA)n Simple_repeat Simple_repeat 2 42 0 2629 121 36 5 chr6 53245383 53245797 -136033757 - MSTA LTR MaLR -1 427 1 1772 162 54 0 chr6 53245869 53246147 -136033407 - AluJo SINE Alu -19 293 1 491 273 80 40 chr6 53246206 53246481 -136033073 - L1MC4 LINE L1 -1898 5910 5625 2228 72 7 14 chr6 53246887 53247180 -136032374 - AluSc SINE Alu -18 291 1 1049 161 92 69 chr6 53247231 53247343 -136032211 - L1ME2 LINE L1 -109 6124 6016 1678 175 26 36 chr6 53247343 53247519 -136032035 - AluJb SINE Alu -2 310 137 2180 135 0 3 chr6 53247519 53247830 -136031724 - AluSx SINE Alu -2 310 1 1678 175 26 36 chr6 53247830 53247962 -136031592 - AluJb SINE Alu -175 137 5 1049 161 92 69 chr6 53247962 53248198 -136031356 - L1ME2 LINE L1 -217 6016 5768 2637 46 0 0 chr6 53248341 53248643 -136030911 + AluY SINE Alu 1 302 -9 905 206 44 4 chr6 53248749 53248977 -136030577 - L1ME2 LINE L1 -461 5772 5536 21 36 0 0 chr6 53249185 53249213 -136030341 + AT_rich Low_complexity Low_complexity 1 28 0 4650 233 112 28 chr6 53249227 53249573 -136029981 - L1ME2 LINE L1 -757 5458 5142 1928 111 11 0 chr6 53249573 53249865 -136029689 - AluSp SINE Alu 0 316 22 2138 108 20 7 chr6 53249867 53250163 -136029391 - AluSx SINE Alu -12 300 1 4650 233 112 28 chr6 53250163 53250332 -136029222 - L1ME2 LINE L1 -1073 5142 4989 2285 96 7 3 chr6 53250332 53250634 -136028920 - AluSp SINE Alu -8 305 3 4650 233 112 28 chr6 53250634 53252422 -136027132 - L1ME2 LINE L1 -1226 4989 2809 1491 188 45 28 chr6 53252422 53252710 -136026844 + AluJo SINE Alu 1 293 -19 4650 233 112 28 chr6 53252710 53252796 -136026758 - L1ME2 LINE L1 -3406 2809 2732 609 233 70 95 chr6 53252813 53253162 -136026392 - L1ME2 LINE L1 -4142 2254 1919 2443 71 7 0 chr6 53253162 53253459 -136026095 - AluSx SINE Alu -13 299 1 609 233 70 95 chr6 53253459 53253606 -136025948 - L1ME2 LINE L1 -4477 1919 1770 2041 155 0 19 chr6 53253679 53253995 -136025559 - AluJb SINE Alu 0 312 3 247 257 54 0 chr6 53253997 53254071 -136025483 - MER58 DNA MER1_type -102 113 36 314 95 0 0 chr6 53254144 53254186 -136025368 + 5S rRNA rRNA 1 42 -79 1034 245 113 52 chr6 53254270 53254727 -136024827 - MER21A LTR ERV1 -75 856 251 1675 195 16 7 chr6 53254727 53255030 -136024524 + AluJo SINE Alu 1 306 -6 1034 245 113 52 chr6 53255030 53255194 -136024360 - MER21A LTR ERV1 -680 251 98 535 194 14 21 chr6 53255197 53255341 -136024213 - L1M4 LINE L1 -2092 4054 3912 1328 170 65 16 chr6 53255356 53255603 -136023951 - AluJo SINE Alu -48 264 6 1376 245 67 12 chr6 53255627 53256059 -136023495 - L1M4 LINE L1 -2256 3890 3435 452 282 81 35 chr6 53256042 53256390 -136023164 - L1ME2 LINE L1 -4755 1641 1278 * 438 243 135 44 chr6 53256795 53257248 -136022306 + L1M4 LINE L1 2224 2717 -3429 1810 139 0 0 chr6 53257309 53257568 -136021986 + AluJb SINE Alu 1 259 -53 246 232 18 0 chr6 53257672 53257728 -136021826 - MER21B LTR ERV1 -795 68 12 543 302 86 18 chr6 53257805 53258083 -136021471 - Charlie7 DNA MER1_type -2311 301 5 2296 104 0 3 chr6 53259232 53259539 -136020015 + AluSg SINE Alu 1 306 -4 1545 105 24 71 chr6 53261340 53261634 -136017920 - L1MA5 LINE L1 -2 6298 6019 1319 176 121 18 chr6 53261803 53262076 -136017478 + AluJb SINE Alu 1 301 -11 4372 162 51 20 chr6 53262411 53263348 -136016206 + L1MB5 LINE L1 5212 6174 0 1888 148 3 7 chr6 53263654 53263952 -136015602 + AluJb SINE Alu 1 297 -15 2294 92 13 10 chr6 53263971 53264277 -136015277 + AluSp SINE Alu 1 307 -6 1162 209 130 7 chr6 53264484 53264785 -136014769 + MER58B DNA MER1_type 1 338 -3 527 164 0 55 chr6 53265290 53265400 -136014154 - FLAM_A SINE Alu -11 131 28 229 313 0 0 chr6 53265591 53265658 -136013896 - MIR SINE MIR -67 195 129 355 126 263 11 chr6 53265667 53265762 -136013792 + FRAM SINE Alu 43 161 -5 356 303 15 38 chr6 53265764 53265896 -136013658 - MIR SINE MIR -132 130 2 778 196 0 25 chr6 53265952 53266142 -136013412 - FRAM SINE Alu 0 40 1 569 156 33 0 chr6 53266145 53266235 -136013319 - AluJ/FLAM SINE Alu -219 93 1 22 56 0 0 chr6 53266242 53266278 -136013276 + AT_rich Low_complexity Low_complexity 1 36 0 198 0 0 0 chr6 53266965 53266987 -136012567 + (A)n Simple_repeat Simple_repeat 1 22 0 1398 179 62 23 chr6 53267039 53267296 -136012258 - AluJb SINE Alu -45 267 1 2307 101 3 0 chr6 53267747 53268045 -136011509 + AluSp SINE Alu 2 300 -13 2330 111 10 0 chr6 53268201 53268508 -136011046 - AluSx SINE Alu -2 310 1 2414 89 0 6 chr6 53268528 53268841 -136010713 - AluY SINE Alu 0 311 1 289 244 44 7 chr6 53268932 53269067 -136010487 + (TA)n Simple_repeat Simple_repeat 2 141 0 240 35 0 0 chr6 53269092 53269121 -136010433 + (TG)n Simple_repeat Simple_repeat 2 30 0 201 171 0 0 chr6 53269889 53269924 -136009630 + T-rich Low_complexity Low_complexity 1 35 0 207 100 0 0 chr6 53270228 53270258 -136009296 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 358 256 124 0 chr6 53270899 53271036 -136008518 + L2 LINE L2 2576 2729 -585 2133 143 0 0 chr6 53271084 53271392 -136008162 + AluJb SINE Alu 1 308 -4 428 330 121 38 chr6 53271512 53271531 -136008023 + L2 LINE L2 2968 2984 -288 1086 173 9 40 chr6 53271531 53271757 -136007797 - MER20 DNA MER1_type 0 219 1 428 330 121 38 chr6 53271757 53272001 -136007553 + L2 LINE L2 2984 3253 -19 2267 90 0 0 chr6 53272318 53272596 -136006958 + AluSg SINE Alu 17 294 -16 25 62 0 16 chr6 53273477 53273509 -136006045 + AT_rich Low_complexity Low_complexity 1 32 -31 1925 133 34 10 chr6 53273509 53273802 -136005752 - AluSx SINE Alu -7 305 6 25 62 0 16 chr6 53273802 53273833 -136005721 + AT_rich Low_complexity Low_complexity 32 63 0 945 189 0 0 chr6 53273855 53274019 -136005535 - AluSg/x SINE Alu -13 299 136 258 160 0 107 chr6 53274019 53274094 -136005460 - AluSp SINE Alu -136 167 101 1048 275 53 41 chr6 53274205 53274675 -136004879 - L1ME3A LINE L1 -231 5939 5457 1694 180 3 40 chr6 53274675 53274997 -136004557 + AluJo SINE Alu 1 310 -2 1048 275 53 41 chr6 53274997 53275165 -136004389 - L1ME3A LINE L1 -713 5457 5293 318 281 39 31 chr6 53275301 53275429 -136004125 + L1MC4a LINE L1 5259 5387 -855 302 259 116 79 chr6 53275537 53275726 -136003828 + L1MC/D LINE L1 5626 5821 -1987 1910 165 0 35 chr6 53275942 53276258 -136003296 + AluJb SINE Alu 1 305 -7 228 135 0 0 chr6 53276267 53276304 -136003250 + L1MB2 LINE L1 5331 5367 -817 304 127 0 18 chr6 53276309 53276364 -136003190 + L1MB2 LINE L1 5438 5491 -680 884 171 79 0 chr6 53276382 53276523 -136003031 + FAM SINE Alu 1 32 -153 3498 169 16 13 chr6 53276523 53277188 -136002366 + L1MB2 LINE L1 5491 6160 -11 2443 81 0 0 chr6 53277188 53277485 -136002069 - AluSp SINE Alu -16 297 1 3498 169 16 13 chr6 53277485 53277498 -136002056 + L1MB2 LINE L1 6160 6171 0 2427 82 0 0 chr6 53277520 53277814 -136001740 + AluSc SINE Alu 1 294 -15 427 145 0 0 chr6 53277963 53278025 -136001529 + AluS SINE Alu 1 62 -256 452 97 0 0 chr6 53328025 53328087 -135951467 - Alu SINE Alu -251 62 1 2000 147 0 10 chr6 53328142 53328434 -135951120 + AluSx SINE Alu 1 289 -23 639 214 8 8 chr6 53328700 53328831 -135950723 - FLAM_A SINE Alu -2 131 1 504 48 0 0 chr6 53328869 53328932 -135950622 + (TAG)n Simple_repeat Simple_repeat 3 65 0 2134 104 17 10 chr6 53328956 53329253 -135950301 - AluSx SINE Alu -13 299 1 2005 139 27 0 chr6 53329580 53329874 -135949680 - AluJb SINE Alu -10 302 1 807 295 120 7 chr6 53330105 53330539 -135949015 + L1MC4a LINE L1 5450 5932 -1876 280 158 26 0 chr6 53330631 53330707 -135948847 + (TA)n Simple_repeat Simple_repeat 1 78 0 204 40 0 0 chr6 53330840 53330865 -135948689 + (TA)n Simple_repeat Simple_repeat 1 25 0 312 137 0 0 chr6 53331695 53331746 -135947808 + (T)n Simple_repeat Simple_repeat 1 51 0 816 193 11 44 chr6 53331749 53331930 -135947624 - FAM SINE Alu 0 175 1 288 0 0 0 chr6 53331934 53331966 -135947588 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2123 137 3 3 chr6 53332155 53332461 -135947093 - AluSx SINE Alu -6 306 1 1986 125 4 7 chr6 53332478 53332796 -135946758 - AluSq SINE Alu 0 322 6 2270 117 0 0 chr6 53333216 53333525 -135946029 - AluSx SINE Alu -3 309 1 2037 149 3 3 chr6 53334941 53335249 -135944305 - AluJb SINE Alu -4 308 1 530 310 163 22 chr6 53335348 53335703 -135943851 - L2 LINE L2 -588 2726 2322 740 291 65 13 chr6 53336033 53336263 -135943291 - MIR SINE MIR -19 243 2 998 264 13 0 chr6 53336816 53337126 -135942428 - L1M4 LINE L1 -2542 3604 3291 1822 87 0 21 chr6 53338081 53338323 -135941231 + AluSx SINE Alu 1 237 -75 1288 39 7 0 chr6 53338648 53338803 -135940751 + AluY SINE Alu 132 287 -24 2000 136 16 100 chr6 53339118 53339154 -135940400 - MLT2D LTR ERVL -4 410 373 468 0 0 0 chr6 53339154 53339206 -135940348 + (TG)n Simple_repeat Simple_repeat 2 53 0 2000 136 16 100 chr6 53339206 53339495 -135940059 - MLT2D LTR ERVL -41 373 131 2186 128 3 0 chr6 53339495 53339799 -135939755 - AluSx SINE Alu -7 305 1 2000 136 16 100 chr6 53339799 53339920 -135939634 - MLT2D LTR ERVL -283 131 1 35 0 0 22 chr6 53339930 53339952 -135939602 + AT_rich Low_complexity Low_complexity 1 22 -23 1879 125 59 0 chr6 53339952 53340224 -135939330 + AluSx SINE Alu 1 288 -24 35 0 0 22 chr6 53340224 53340247 -135939307 + AT_rich Low_complexity Low_complexity 22 45 0 304 200 0 0 chr6 53340847 53340897 -135938657 - 5S rRNA rRNA -71 50 1 537 285 47 28 chr6 53341331 53341584 -135937970 + L2 LINE L2 2225 2482 -832 320 338 47 83 chr6 53341651 53342059 -135937495 + L2 LINE L2 2876 3268 -4 2143 137 0 0 chr6 53342084 53342390 -135937164 + AluSx SINE Alu 1 306 -6 355 213 98 101 chr6 53345115 53345302 -135934252 - L1MC5 LINE L1 -44 7917 7731 1046 142 137 25 chr6 53345302 53345499 -135934055 + MER20 DNA MER1_type 1 219 0 355 213 98 101 chr6 53345499 53345564 -135933990 - L1MC5 LINE L1 -230 7731 7667 198 71 0 0 chr6 53345564 53345592 -135933962 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 219 36 0 0 chr6 53345591 53345619 -135933935 + (GA)n Simple_repeat Simple_repeat 2 29 0 355 213 98 101 chr6 53345592 53345619 -135933935 - L1MC5 LINE L1 -294 7667 7663 1996 132 0 0 chr6 53345619 53345892 -135933662 - AluSx SINE Alu -39 273 1 355 213 98 101 chr6 53345892 53345933 -135933621 - L1MC5 LINE L1 -298 7663 7623 2011 127 0 51 chr6 53346070 53346384 -135933170 + AluSg SINE Alu 1 298 -12 21 82 0 0 chr6 53346632 53346681 -135932873 + AT_rich Low_complexity Low_complexity 1 49 0 298 143 86 14 chr6 53346756 53346826 -135932728 + MIR SINE MIR 126 200 -62 400 249 195 11 chr6 53347512 53347697 -135931857 - L1ME4a LINE L1 -58 6063 5845 1929 112 0 4 chr6 53347821 53348079 -135931475 - AluSq SINE Alu -56 257 1 289 259 176 35 chr6 53348088 53348454 -135931100 - L1ME4a LINE L1 -488 5633 5361 259 298 76 15 chr6 53348843 53348974 -135930580 - L1MC/D LINE L1 -2158 5650 5512 990 205 6 0 chr6 53349200 53349366 -135930188 - FAM SINE Alu -8 167 1 327 211 204 20 chr6 53349401 53349553 -135930001 - L1ME4a LINE L1 -3 6118 5939 1904 151 0 4 chr6 53349730 53350009 -135929545 + AluJb SINE Alu 21 298 -14 2005 134 24 3 chr6 53350264 53350562 -135928992 - AluSx SINE Alu -8 304 1 1142 137 0 0 chr6 53350600 53350753 -135928801 + AluSg SINE Alu 1 153 -157 22 35 0 0 chr6 53351430 53351459 -135928095 + AT_rich Low_complexity Low_complexity 1 29 0 261 240 187 13 chr6 53351763 53351838 -135927716 - MIR SINE MIR -62 146 59 1678 192 7 10 chr6 53351851 53352153 -135927401 - AluJb SINE Alu -11 301 1 298 279 79 7 chr6 53352185 53352325 -135927229 - MIR SINE MIR -49 213 64 255 299 132 46 chr6 53352358 53352377 -135927177 - MIR SINE MIR -25 237 221 2281 109 6 6 chr6 53352377 53352688 -135926866 - AluSq SINE Alu -2 311 1 255 299 132 46 chr6 53352688 53352842 -135926712 - MIR SINE MIR -41 221 49 1952 143 14 3 chr6 53353213 53353506 -135926048 + AluSx SINE Alu 1 296 -16 2182 75 89 0 chr6 53353966 53354247 -135925307 + AluSx SINE Alu 1 306 -6 281 234 255 0 chr6 53354829 53354974 -135924580 - L1MC4 LINE L1 0 8042 7861 768 241 36 0 chr6 53355094 53355314 -135924240 - L1MC4 LINE L1 -985 7057 6830 2359 106 0 0 chr6 53355723 53356025 -135923529 + AluSx SINE Alu 1 302 -10 180 0 0 0 chr6 53357597 53357617 -135921937 + (A)n Simple_repeat Simple_repeat 1 20 0 2212 93 3 23 chr6 53357984 53358284 -135921270 + AluSg SINE Alu 1 294 -16 479 16 0 16 chr6 53358291 53358352 -135921202 + (CA)n Simple_repeat Simple_repeat 2 61 0 185 195 260 39 chr6 53358767 53358844 -135920710 - MIR SINE MIR -116 146 53 267 231 99 22 chr6 53359070 53359161 -135920393 - LTR16A LTR ERVL -5 445 348 2130 115 0 26 chr6 53359450 53359737 -135919817 + AluSx SINE Alu 1 281 -31 219 36 0 0 chr6 53359737 53359765 -135919789 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2130 115 0 26 chr6 53359765 53359782 -135919772 + AluSx SINE Alu 281 297 -15 2104 87 39 14 chr6 53359782 53360068 -135919486 + AluY SINE Alu 1 293 -18 234 0 0 0 chr6 53360921 53360947 -135918607 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1050 132 0 0 chr6 53361581 53361733 -135917821 + AluSg/x SINE Alu 157 308 -2 1770 177 35 0 chr6 53362647 53362929 -135916625 + AluJb SINE Alu 1 292 -20 793 103 0 0 chr6 53362932 53363039 -135916515 + U6 snRNA snRNA 1 107 0 229 36 0 0 chr6 53363039 53363067 -135916487 + U7 snRNA snRNA 10 37 -26 570 241 75 8 chr6 53363614 53363747 -135915807 + MIR SINE MIR 20 161 -101 741 161 0 0 chr6 53365155 53365279 -135914275 + AluJb SINE Alu 178 301 -11 923 229 75 14 chr6 53365595 53365809 -135913745 + MIR SINE MIR 23 249 -13 2240 116 0 0 chr6 53365840 53366133 -135913421 + AluSx SINE Alu 17 309 -3 291 215 83 16 chr6 53366241 53366362 -135913192 - HAL1 LINE L1 -322 2185 2057 311 80 0 0 chr6 53366362 53366412 -135913142 - Alu SINE Alu 0 302 253 2334 99 3 0 chr6 53366527 53366829 -135912725 - AluSx SINE Alu -9 303 1 802 257 108 78 chr6 53366960 53367215 -135912339 - HAL1 LINE L1 -738 1769 1523 2095 138 0 7 chr6 53367215 53367512 -135912042 - AluSx SINE Alu -17 295 1 815 125 31 23 chr6 53367515 53367643 -135911911 - FLAM_A SINE Alu -3 130 2 802 257 108 78 chr6 53367643 53367693 -135911861 - HAL1 LINE L1 -985 1522 1475 2080 127 3 7 chr6 53367693 53367992 -135911562 - AluSx SINE Alu -12 300 3 802 257 108 78 chr6 53367992 53368675 -135910879 - HAL1 LINE L1 -1032 1475 513 248 96 0 0 chr6 53369371 53369423 -135910131 - L1MB3 LINE L1 -7 6176 6125 2448 76 3 0 chr6 53369674 53369977 -135909577 + AluSp SINE Alu 1 304 -9 1053 225 9 22 chr6 53369980 53370207 -135909347 + AluJb SINE Alu 86 309 -3 370 315 189 41 chr6 53370208 53370811 -135908743 + L2 LINE L2 1781 2520 -794 2221 120 0 0 chr6 53370811 53371103 -135908451 - AluSx SINE Alu -20 292 1 370 315 189 41 chr6 53371103 53371254 -135908300 + L2 LINE L2 2520 2647 -667 204 295 250 28 chr6 53371329 53371617 -135907937 + L2 LINE L2 2825 3176 -96 1176 119 0 0 chr6 53372096 53372256 -135907298 - AluSg/x SINE Alu -16 294 135 182 245 123 47 chr6 53373137 53373243 -135906311 + MIR SINE MIR 41 154 -108 1956 138 17 3 chr6 53373252 53373543 -135906011 + AluSx SINE Alu 1 295 -17 257 346 117 25 chr6 53373553 53373715 -135905839 - MER91A DNA MER1_type -1 195 19 339 274 88 0 chr6 53373816 53373918 -135905636 + MIR SINE MIR 110 220 -42 331 328 55 23 chr6 53374081 53374209 -135905345 - MIR SINE MIR -111 151 20 2320 105 10 0 chr6 53374448 53374754 -135904800 + AluSx SINE Alu 1 309 -3 315 300 30 0 chr6 53375778 53375878 -135903676 + MER103 DNA DNA 63 165 -1 247 262 70 90 chr6 53376142 53376266 -135903288 + L1ME LINE L1 5582 5700 -421 1711 168 28 3 chr6 53376266 53376552 -135903002 + AluJb SINE Alu 1 293 -19 247 262 70 90 chr6 53376552 53376671 -135902883 + L1ME LINE L1 5700 5820 -301 648 155 0 0 chr6 53376684 53376781 -135902773 + FLAM_A SINE Alu 1 97 -45 2403 52 0 0 chr6 53376841 53377112 -135902442 + AluY SINE Alu 17 287 -24 279 304 36 18 chr6 53378162 53378274 -135901280 - MIR SINE MIR -43 219 106 1985 127 68 0 chr6 53378764 53379056 -135900498 - AluSx SINE Alu 0 312 1 695 241 0 0 chr6 53379215 53379348 -135900206 - FLAM_A SINE Alu 0 133 1 407 264 80 8 chr6 53379351 53379476 -135900078 - MIR3 SINE MIR -11 197 64 2292 176 52 41 chr6 53379495 53379557 -135899997 + L1MB3 LINE L1 5207 5267 -916 1613 135 73 59 chr6 53379557 53379655 -135899899 + AluJb SINE Alu 1 96 -216 2606 50 0 3 chr6 53379655 53379957 -135899597 + AluY SINE Alu 5 305 -6 1613 135 73 59 chr6 53379957 53380147 -135899407 + AluJb SINE Alu 96 293 -19 2292 176 52 41 chr6 53380147 53380690 -135898864 + L1MB3 LINE L1 5267 5813 -370 1253 107 0 0 chr6 53380690 53380849 -135898705 + AluSg/x SINE Alu 129 287 -25 2274 111 31 3 chr6 53380850 53381209 -135898345 + L1MB3 LINE L1 5815 6183 0 1758 136 64 0 chr6 53381212 53381476 -135898078 - AluJb SINE Alu -17 295 15 283 273 64 45 chr6 53382172 53382282 -135897272 - L1MC5 LINE L1 -30 7931 7820 804 187 7 7 chr6 53382383 53382533 -135897021 - MER46A DNA MER2_type -86 150 1 525 143 0 0 chr6 53382601 53382685 -135896869 + MER46A DNA MER2_type 151 234 -2 373 184 13 0 chr6 53382793 53382869 -135896685 - MER116 DNA Mariner 0 80 4 349 337 110 18 chr6 53382899 53383062 -135896492 + MER5B DNA MER1_type 1 178 0 2495 66 3 25 chr6 53383065 53383383 -135896171 + AluY SINE Alu 1 311 0 2114 98 21 11 chr6 53383802 53384088 -135895466 + AluSq SINE Alu 1 289 -24 1367 109 259 21 chr6 53384239 53384478 -135895076 - AluSx SINE Alu -15 297 2 827 131 16 0 chr6 53384540 53384662 -135894892 + FRAM SINE Alu 40 163 -13 570 291 115 93 chr6 53384719 53384848 -135894706 - L1ME3A LINE L1 -139 6023 5898 10036 68 12 58 chr6 53384848 53386281 -135893273 - SVA Other Other -1 1385 19 570 291 115 93 chr6 53386281 53386293 -135893261 - L1ME3A LINE L1 -264 5898 5888 2224 114 0 0 chr6 53386293 53386611 -135892943 - AluSx SINE Alu 0 312 1 570 291 115 93 chr6 53386611 53386921 -135892633 - L1ME3A LINE L1 -274 5888 5561 668 271 202 40 chr6 53387548 53387924 -135891630 - L2 LINE L2 -27 3286 2850 233 231 19 0 chr6 53387952 53388004 -135891550 - L2 LINE L2 -545 2769 2717 * 279 327 65 19 chr6 53388002 53388109 -135891445 + L2 LINE L2 3153 3264 -8 219 69 0 0 chr6 53389355 53389384 -135890170 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 195 42 0 0 chr6 53390553 53390577 -135888977 + (T)n Simple_repeat Simple_repeat 1 24 0 1765 147 14 24 chr6 53392972 53393264 -135886290 - AluJo SINE Alu -23 289 1 1230 238 162 13 chr6 53393292 53393754 -135885800 - L1ME1 LINE L1 -5 6161 5631 2351 99 0 0 chr6 53394408 53394710 -135884844 + AluSq SINE Alu 1 302 -11 228 293 75 29 chr6 53397460 53397634 -135881920 + L2 LINE L2 2827 3008 -264 1761 161 9 41 chr6 53397815 53398132 -135881422 - AluSg SINE Alu -3 307 1 308 311 132 21 chr6 53398215 53398372 -135881182 + MIR SINE MIR 27 210 -52 1522 143 0 62 chr6 53398372 53398644 -135880910 + AluJo SINE Alu 1 255 -57 308 311 132 21 chr6 53398644 53398676 -135880878 + MIR SINE MIR 210 237 -25 2393 87 0 22 chr6 53398720 53399032 -135880522 - AluSx SINE Alu -3 309 5 371 223 23 62 chr6 53399135 53399265 -135880289 + L2 LINE L2 3186 3310 -3 1468 158 37 84 chr6 53399749 53399921 -135879633 - AluJo SINE Alu -5 307 155 2069 99 11 4 chr6 53399921 53400193 -135879361 - AluSp SINE Alu -39 274 1 1468 158 37 84 chr6 53400193 53400342 -135879212 - AluJo SINE Alu -157 155 1 769 147 6 124 chr6 53400359 53400536 -135879018 - AluJo SINE Alu -92 220 65 2278 98 3 7 chr6 53400729 53401026 -135878528 + AluSq SINE Alu 1 296 -17 2254 110 0 20 chr6 53401358 53401657 -135877897 + AluSx SINE Alu 7 299 -13 1429 184 6 74 chr6 53401665 53401991 -135877563 + AluJo SINE Alu 1 304 -8 24 0 0 0 chr6 53401991 53402015 -135877539 + AT_rich Low_complexity Low_complexity 1 24 0 1006 175 219 7 chr6 53402315 53402584 -135876970 + L1MB5 LINE L1 5849 6174 0 2040 131 10 0 chr6 53402592 53402898 -135876656 + AluY SINE Alu 1 309 -2 279 54 0 0 chr6 53402923 53402960 -135876594 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 379 268 134 35 chr6 53403477 53403619 -135875935 - L2 LINE L2 0 3313 3158 224 239 55 55 chr6 53403827 53403936 -135875618 - L2 LINE L2 -20 3252 3144 331 186 81 12 chr6 53404123 53404209 -135875345 + L1ME3 LINE L1 6037 6128 -34 899 174 75 0 chr6 53404209 53404370 -135875184 + FRAM SINE Alu 1 170 -6 288 0 0 0 chr6 53404370 53404402 -135875152 + (TA)n Simple_repeat Simple_repeat 2 33 0 2301 89 0 16 chr6 53404445 53404749 -135874805 + AluSc SINE Alu 1 299 -10 1773 115 77 80 chr6 53404759 53404894 -135874660 + AluSx SINE Alu 1 135 -177 2586 68 0 0 chr6 53404894 53405204 -135874350 + AluY SINE Alu 1 310 -1 1773 115 77 80 chr6 53405204 53405381 -135874173 + AluSx SINE Alu 135 312 0 262 264 48 24 chr6 53405621 53405746 -135873808 - L1MC4a LINE L1 -1829 5979 5852 1118 163 0 0 chr6 53405804 53405970 -135873584 - AluSx SINE Alu -146 166 1 867 279 94 60 chr6 53405970 53406490 -135873064 - L1MC4a LINE L1 -1951 5857 5320 467 246 194 32 chr6 53406618 53406817 -135872737 + MIR SINE MIR 7 235 -27 218 307 61 18 chr6 53407581 53407695 -135871859 + MIR SINE MIR 135 253 -9 196 320 107 29 chr6 53407708 53407811 -135871743 - MIR3 SINE MIR -21 187 77 2498 78 0 3 chr6 53407819 53408126 -135871428 + AluSg SINE Alu 1 306 -4 507 276 49 49 chr6 53408210 53408373 -135871181 - L2 LINE L2 0 3313 3151 388 298 133 0 chr6 53409651 53409809 -135869745 + MIR SINE MIR 81 259 -3 829 191 7 0 chr6 53409823 53409975 -135869579 + MSTD LTR MaLR 1 153 -243 732 125 8 8 chr6 53410000 53410128 -135869426 + MSTD LTR MaLR 299 426 -2 858 255 94 76 chr6 53410791 53411368 -135868186 + L1MC5 LINE L1 7279 7865 -96 1001 76 0 0 chr6 53411369 53411487 -135868067 - AluSq/x SINE Alu -195 118 1 436 184 13 13 chr6 53411513 53411589 -135867965 - FRAM/FAM SINE Alu -102 74 1 2424 102 0 0 chr6 53411713 53412017 -135867537 + AluSx SINE Alu 1 304 -8 2431 91 3 0 chr6 53412409 53412718 -135866836 + AluSx SINE Alu 1 310 -2 2074 181 10 2 chr6 53412890 53413288 -135866266 + L1MB8 LINE L1 5769 6169 -9 2069 154 0 3 chr6 53413289 53413588 -135865966 - AluJb SINE Alu -14 298 1 459 228 32 8 chr6 53413610 53413700 -135865854 + MIR SINE MIR 65 160 -102 2189 122 10 0 chr6 53413700 53414026 -135865528 + AluSx SINE Alu 1 312 0 459 228 32 8 chr6 53414026 53414058 -135865496 + MIR SINE MIR 160 190 -72 2252 103 0 0 chr6 53414162 53414467 -135865087 + AluSx SINE Alu 4 308 0 699 205 0 0 chr6 53415049 53415166 -135864388 + FLAM_A SINE Alu 1 117 -16 1153 139 0 57 chr6 53415166 53415360 -135864194 - AluJ SINE Alu -1 311 129 2255 127 3 0 chr6 53415383 53415690 -135863864 - AluSq SINE Alu -5 308 1 300 154 0 0 chr6 53415690 53415742 -135863812 + T-rich Low_complexity Low_complexity 1 52 0 876 135 15 15 chr6 53415742 53415875 -135863679 - AluJ SINE Alu -169 133 1 1848 125 4 25 chr6 53415901 53416181 -135863373 + AluSq SINE Alu 1 274 -39 1832 153 0 40 chr6 53416654 53416796 -135862758 + AluSx SINE Alu 1 126 -186 1800 134 41 14 chr6 53416796 53417087 -135862467 + AluJb SINE Alu 1 299 -13 1832 153 0 40 chr6 53417087 53417245 -135862309 + AluSx SINE Alu 126 289 -23 31 0 0 0 chr6 53417245 53417276 -135862278 + AT_rich Low_complexity Low_complexity 1 31 0 1865 147 0 51 chr6 53417423 53417735 -135861819 - AluJb SINE Alu -16 296 1 347 273 132 72 chr6 53417781 53417938 -135861616 + L1ME4a LINE L1 5631 5777 -344 2163 105 7 29 chr6 53417938 53418244 -135861310 - AluSg SINE Alu -11 299 1 347 273 132 72 chr6 53418244 53418333 -135861221 + L1ME4a LINE L1 5777 5859 -262 2487 75 7 0 chr6 53418333 53418639 -135860915 - AluSp SINE Alu -5 308 1 347 273 132 72 chr6 53418639 53418808 -135860746 + L1ME4a LINE L1 5859 6072 -49 209 264 38 0 chr6 53419808 53419861 -135859693 - L2 LINE L2 -11 3261 3207 * 443 286 23 47 chr6 53419851 53420022 -135859532 - MIR3 SINE MIR -22 186 20 482 113 12 12 chr6 53420299 53420379 -135859175 - MER116 DNA Mariner 0 80 1 1891 152 0 31 chr6 53421705 53421821 -135857733 + AluJo SINE Alu 1 119 -193 198 0 0 0 chr6 53421821 53421843 -135857711 + (CA)n Simple_repeat Simple_repeat 1 22 0 1891 152 0 31 chr6 53421843 53422048 -135857506 + AluJo SINE Alu 119 312 0 936 167 19 6 chr6 53422122 53422284 -135857270 + AluSg/x SINE Alu 137 300 -12 291 226 50 25 chr6 53422331 53422490 -135857064 + L1ME LINE L1 5285 5447 -715 2150 138 0 0 chr6 53422495 53422791 -135856763 + AluSq SINE Alu 1 296 -17 4995 173 44 16 chr6 53422909 53423882 -135855672 - L1MC2 LINE L1 -9 6335 5329 693 209 0 0 chr6 53423882 53424011 -135855543 - FLAM_A SINE Alu -4 129 1 4995 173 44 16 chr6 53424011 53424072 -135855482 - L1MC2 LINE L1 -1015 5329 5271 793 153 0 8 chr6 53424115 53424233 -135855321 - FLAM_C SINE Alu -12 121 5 2012 132 0 47 chr6 53424333 53424652 -135854902 + AluSx SINE Alu 1 304 -8 405 295 88 9 chr6 53424905 53425132 -135854422 + MARNA DNA Mariner 78 322 -264 271 305 11 0 chr6 53425898 53425993 -135853561 + C-rich Low_complexity Low_complexity 3 98 0 1902 120 4 0 chr6 53427023 53427281 -135852273 + AluSq SINE Alu 1 259 -54 186 133 0 0 chr6 53427281 53427311 -135852243 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 * 430 187 9 9 chr6 53427283 53427349 -135852205 + GA-rich Low_complexity Low_complexity 2 70 -38 2263 113 0 10 chr6 53427349 53427659 -135851895 + AluSx SINE Alu 1 307 -5 430 187 9 9 chr6 53427659 53427699 -135851855 + GA-rich Low_complexity Low_complexity 69 108 0 * 750 117 0 22 chr6 53427677 53427767 -135851787 + (GGAA)n Simple_repeat Simple_repeat 2 90 -45 2243 127 0 10 chr6 53427767 53428081 -135851473 + AluSx SINE Alu 1 311 -1 750 117 0 22 chr6 53428081 53428127 -135851427 + (GGAA)n Simple_repeat Simple_repeat 90 135 0 556 167 19 19 chr6 53428127 53428235 -135851319 + GA-rich Low_complexity Low_complexity 1 108 0 2048 149 3 3 chr6 53428238 53428546 -135851008 + AluJb SINE Alu 1 308 -4 1066 179 15 0 chr6 53428576 53428771 -135850783 + MLT1B LTR MaLR 193 390 0 2478 79 23 0 chr6 53428833 53429137 -135850417 - AluSq SINE Alu -2 311 1 410 271 170 54 chr6 53429188 53429411 -135850143 - L1ME3A LINE L1 -223 5947 5684 1946 152 17 0 chr6 53429411 53429708 -135849846 + AluJb SINE Alu 1 302 -10 410 271 170 54 chr6 53429708 53429761 -135849793 - L1ME3A LINE L1 -486 5684 5639 369 145 0 0 chr6 53429761 53429823 -135849731 + FLAM_A SINE Alu 72 133 0 365 294 6 85 chr6 53429845 53430022 -135849532 - L1M4 LINE L1 -3330 2816 2654 1797 143 59 3 chr6 53430022 53430309 -135849245 - AluSx SINE Alu -9 303 1 2121 121 6 19 chr6 53430348 53430525 -135849029 - AluSq SINE Alu -4 309 131 180 0 0 0 chr6 53430525 53430545 -135849009 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2298 89 0 0 chr6 53430545 53430825 -135848729 - AluY SINE Alu -31 280 1 2121 121 6 19 chr6 53430825 53430959 -135848595 - AluSq SINE Alu -180 133 1 1712 104 5 0 chr6 53431019 53431240 -135848314 + AluSx SINE Alu 9 230 -82 41 21 0 0 chr6 53431240 53431288 -135848266 + AT_rich Low_complexity Low_complexity 1 48 0 1050 140 167 9 chr6 53431490 53431718 -135847836 - MER21A LTR ERV1 -667 264 1 388 295 74 96 chr6 53431748 53431925 -135847629 - L1MEd LINE L1 -5746 373 194 2476 85 3 0 chr6 53431925 53432230 -135847324 + AluSp SINE Alu 1 306 -7 388 295 74 96 chr6 53432230 53432264 -135847290 - L1MEd LINE L1 -5925 194 161 2287 110 3 0 chr6 53432264 53432554 -135847000 + AluSx SINE Alu 3 293 -19 388 295 74 96 chr6 53432554 53432577 -135846977 - L1MEd LINE L1 -5958 161 139 4089 201 49 29 chr6 53432577 53433512 -135846042 - LTR13 LTR ERVK 0 954 1 388 295 74 96 chr6 53433512 53433628 -135845926 - L1MEd LINE L1 -5980 139 29 2275 109 0 26 chr6 53433647 53433949 -135845605 - AluSq SINE Alu -19 294 1 2101 145 0 3 chr6 53433958 53434261 -135845293 - AluSx SINE Alu -10 302 1 1885 157 0 11 chr6 53434393 53434704 -135844850 + AluJb SINE Alu 1 308 0 305 58 0 130 chr6 53434704 53434761 -135844793 + MER106B DNA MER1_type 1009 1058 -1 391 252 95 5 chr6 53434782 53435024 -135844530 - LTR16C LTR ERVL -47 444 163 2044 141 0 3 chr6 53435163 53435461 -135844093 + AluJb SINE Alu 3 299 -13 802 173 0 8 chr6 53435520 53435653 -135843901 - FRAM SINE Alu 0 40 1 235 217 0 0 chr6 53435653 53435713 -135843841 + L1MA3 LINE L1 5083 5142 -1004 2201 116 0 0 chr6 53435714 53436008 -135843546 + AluSx SINE Alu 1 294 -18 1150 162 0 0 chr6 53436008 53436187 -135843367 + AluSg/x SINE Alu 132 310 0 6895 98 7 20 chr6 53436188 53437113 -135842441 + L1MA3 LINE L1 5134 6070 -235 2277 108 3 0 chr6 53437113 53437408 -135842146 + AluSq SINE Alu 1 296 -17 6895 98 7 20 chr6 53437408 53437430 -135842124 + L1MA3 LINE L1 6070 6091 -214 1671 199 3 13 chr6 53437430 53437732 -135841822 + AluJb SINE Alu 1 299 -13 6895 98 7 20 chr6 53437732 53437971 -135841583 + L1MA3 LINE L1 6091 6305 0 1235 148 16 5 chr6 53437986 53438175 -135841379 - AluJo SINE Alu -116 196 6 2268 117 10 0 chr6 53438216 53438523 -135841031 - AluSx SINE Alu -2 310 1 1402 101 0 53 chr6 53438717 53438925 -135840629 + AluSx SINE Alu 1 197 -115 309 65 22 0 chr6 53439025 53439071 -135840483 - Alu SINE Alu -255 47 1 877 135 15 15 chr6 53439097 53439282 -135840272 + FLAM_C SINE Alu 1 185 0 2255 127 3 0 chr6 53439282 53439589 -135839965 + AluSq SINE Alu 1 308 -5 1153 139 0 57 chr6 53439612 53439806 -135839748 + AluJb SINE Alu 129 311 -1 699 205 0 0 chr6 53439806 53439923 -135839631 - FLAM_A SINE Alu -16 117 1 1893 122 32 11 chr6 53440505 53440807 -135838747 - AluSx SINE Alu 0 308 1 288 187 65 166 chr6 53440807 53440880 -135838674 + MIR SINE MIR 137 216 -46 1714 137 51 45 chr6 53440880 53441030 -135838524 - AluJo SINE Alu -18 294 147 2545 63 0 3 chr6 53441030 53441332 -135838222 - AluY SINE Alu -10 301 1 2470 83 0 3 chr6 53441334 53441636 -135837918 - AluSg SINE Alu -9 301 1 1714 137 51 45 chr6 53441636 53441774 -135837780 - AluJo SINE Alu -165 147 1 288 187 65 166 chr6 53441774 53441839 -135837715 + MIR SINE MIR 216 261 -1 1848 114 81 0 chr6 53441992 53442263 -135837291 + AluSx SINE Alu 1 293 -19 2246 106 17 0 chr6 53442356 53442657 -135836897 - AluSc SINE Alu -1 308 3 2045 116 3 14 chr6 53442665 53442973 -135836581 - AluSg1 SINE Alu 0 305 1 902 134 0 37 chr6 53442975 53443109 -135836445 - AluJo/FLAM SINE Alu -173 129 1 1993 153 14 0 chr6 53443193 53443488 -135836066 + AluJb SINE Alu 1 299 -13 22 0 0 0 chr6 53444042 53444064 -135835490 + AT_rich Low_complexity Low_complexity 1 22 0 1992 151 0 26 chr6 53444067 53444378 -135835176 + AluJb SINE Alu 2 304 -8 27 0 0 0 chr6 53444434 53444461 -135835093 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr6 53444727 53444755 -135834799 + AT_rich Low_complexity Low_complexity 1 28 0 2419 93 3 3 chr6 53447029 53447341 -135832213 + AluSx SINE Alu 1 312 0 434 198 23 12 chr6 53447790 53447876 -135831678 - AluSg/x SINE Alu -91 221 135 2424 102 0 0 chr6 53448000 53448304 -135831250 + AluSx SINE Alu 1 304 -8 2431 91 3 0 chr6 53448696 53449005 -135830549 + AluSx SINE Alu 1 310 -2 2074 181 10 2 chr6 53449177 53449575 -135829979 + L1MB8 LINE L1 5769 6169 -9 2069 154 0 3 chr6 53449576 53449875 -135829679 - AluJb SINE Alu -14 298 1 459 228 32 8 chr6 53449897 53449987 -135829567 + MIR SINE MIR 65 160 -102 2189 122 10 0 chr6 53449987 53450313 -135829241 + AluSx SINE Alu 1 312 0 459 228 32 8 chr6 53450313 53450345 -135829209 + MIR SINE MIR 160 190 -72 2314 106 0 0 chr6 53450449 53450742 -135828812 + AluSx SINE Alu 4 296 -16 2400 77 7 0 chr6 53450810 53451107 -135828447 + AluY SINE Alu 1 299 -12 1464 201 15 4 chr6 53451163 53451427 -135828127 + AluJb SINE Alu 1 267 -45 1616 156 92 0 chr6 53451704 53451986 -135827568 - AluJb SINE Alu -4 308 1 1057 165 0 6 chr6 53452120 53452284 -135827270 - AluJb SINE Alu -16 296 134 1552 120 147 8 chr6 53452284 53452390 -135827164 - AluSx SINE Alu -17 295 205 2559 74 0 0 chr6 53452390 53452699 -135826855 - AluY SINE Alu 0 311 3 1584 98 15 0 chr6 53452703 53452906 -135826648 - AluSq SINE Alu -107 206 1 1552 120 147 8 chr6 53452906 53453053 -135826501 - AluSx SINE Alu -109 203 1 1087 201 14 106 chr6 53453053 53453275 -135826279 + L1M4 LINE L1 3839 4017 -2129 1500 202 56 0 chr6 53453275 53453562 -135825992 - AluSg SINE Alu -2 308 6 1087 201 14 106 chr6 53453562 53453698 -135825856 + L1M4 LINE L1 4017 4164 -1982 286 250 0 0 chr6 53453842 53453898 -135825656 + MER91 DNA MER1_type 141 196 0 349 221 95 179 chr6 53454021 53454129 -135825425 - MER5A DNA MER1_type 0 189 73 256 47 23 23 chr6 53454129 53454172 -135825382 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2188 82 25 0 chr6 53454174 53454454 -135825100 - AluSg SINE Alu -23 287 1 349 221 95 179 chr6 53454454 53454468 -135825086 - MER5A DNA MER1_type -117 72 58 2342 57 30 27 chr6 53454468 53454767 -135824787 - AluY SINE Alu -11 300 1 349 221 95 179 chr6 53454767 53454830 -135824724 - MER5A DNA MER1_type -131 58 5 1175 107 42 0 chr6 53455162 53455330 -135824224 + AluSg/x SINE Alu 135 309 -1 263 314 172 40 chr6 53455586 53455981 -135823573 + L2 LINE L2 1564 2010 -1304 2581 55 7 0 chr6 53455987 53456296 -135823258 - AluY SINE Alu 0 311 1 2887 126 70 2 chr6 53456572 53457072 -135822482 + Tigger3(Golem) DNA MER2_type 2496 3029 0 839 181 0 0 chr6 53457094 53457227 -135822327 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr6 53457550 53457572 -135821982 + AT_rich Low_complexity Low_complexity 1 22 0 1642 163 6 56 chr6 53458382 53458701 -135820853 + AluJo SINE Alu 1 303 -9 220 330 11 45 chr6 53458926 53459014 -135820540 - L2 LINE L2 -10 3303 3219 1957 143 13 7 chr6 53459198 53459498 -135820056 - AluSx SINE Alu -10 302 1 637 184 0 0 chr6 53459599 53459724 -135819830 - L1MB3 LINE L1 -42 6141 6017 1127 287 126 56 chr6 53459745 53460332 -135819222 + L2 LINE L2 969 1614 -1700 2300 106 17 0 chr6 53460332 53460634 -135818920 + AluSq SINE Alu 1 307 -6 1127 287 126 56 chr6 53460634 53460747 -135818807 + L2 LINE L2 1614 1718 -1596 1055 182 18 59 chr6 53460747 53460967 -135818587 + AluJb SINE Alu 97 307 -5 1387 268 179 68 chr6 53460971 53461320 -135818234 + L2 LINE L2 1711 2020 -1293 302 82 143 0 chr6 53461320 53461369 -135818185 - LTR8 LTR ERV1 -88 603 548 1387 268 179 68 chr6 53461369 53462314 -135817240 + L2 LINE L2 2020 3232 -81 2100 91 4 4 chr6 53462815 53463080 -135816474 - AluSg SINE Alu -45 265 1 2127 116 3 10 chr6 53463274 53463576 -135815978 - AluSq SINE Alu -13 300 1 214 197 42 35 chr6 53463901 53463962 -135815592 - MER5B DNA MER1_type -10 179 110 289 347 100 0 chr6 53464170 53464360 -135815194 + MIR SINE MIR 54 262 0 202 149 0 43 chr6 53465835 53465882 -135813672 + (CCCCCT)n Simple_repeat Simple_repeat 3 47 0 613 164 15 75 chr6 53466168 53466286 -135813268 - MIR SINE MIR -121 141 30 2355 101 0 3 chr6 53466286 53466592 -135812962 - AluSx SINE Alu -7 305 1 613 164 15 75 chr6 53466592 53466607 -135812947 - MIR SINE MIR -232 30 16 548 315 35 25 chr6 53466741 53466833 -135812721 + MIR SINE MIR 32 122 -140 2421 93 3 3 chr6 53466833 53467144 -135812410 - AluSp SINE Alu -2 311 1 548 315 35 25 chr6 53467144 53467254 -135812300 + MIR SINE MIR 122 236 -26 1678 184 0 16 chr6 53467655 53467964 -135811590 + AluJo SINE Alu 1 304 -8 2440 52 41 0 chr6 53468189 53468480 -135811074 + AluY SINE Alu 1 303 -8 335 154 0 9 chr6 53470331 53470389 -135809165 + Alu SINE Alu 1 48 -255 219 247 0 27 chr6 53470528 53470601 -135808953 + C-rich Low_complexity Low_complexity 2 72 0 2469 68 10 0 chr6 53471670 53471978 -135807576 - AluSp SINE Alu -2 311 1 189 0 0 0 chr6 53471979 53472000 -135807554 + (T)n Simple_repeat Simple_repeat 1 21 0 287 221 0 87 chr6 53473035 53473139 -135806415 - L1MC5 LINE L1 -37 7924 7830 2566 128 24 2 chr6 53473140 53473563 -135805991 + L1MA4 LINE L1 5869 6300 0 1022 86 0 0 chr6 53474068 53474196 -135805358 - AluSq/x SINE Alu -182 130 3 198 0 0 0 chr6 53474340 53474362 -135805192 + (TG)n Simple_repeat Simple_repeat 2 23 0 655 183 0 0 chr6 53474366 53474470 -135805084 - FLAM_C SINE Alu -19 124 21 1685 143 77 0 chr6 53474517 53474790 -135804764 + AluSx SINE Alu 1 294 -18 2261 103 13 3 chr6 53474853 53475155 -135804399 - AluSq SINE Alu -8 305 1 1191 142 16 0 chr6 53475205 53475388 -135804166 - AluJb SINE Alu -97 215 30 318 274 73 0 chr6 53477560 53477700 -135801854 + L1P LINE L1 4870 5019 -1127 1040 278 46 26 chr6 53478013 53478411 -135801143 + L1MC4a LINE L1 5265 5661 -706 729 183 56 0 chr6 53478423 53478549 -135801005 - FLAM_A SINE Alu 0 133 1 291 156 0 0 chr6 53478669 53478714 -135800840 + L1MB5 LINE L1 6020 6064 -110 1140 174 0 28 chr6 53478717 53478930 -135800624 + AluJo SINE Alu 90 296 -16 396 111 37 49 chr6 53478943 53479024 -135800530 + L1MB7 LINE L1 6105 6184 0 467 282 64 18 chr6 53479025 53479216 -135800338 + L1MC4a LINE L1 5738 5945 -176 324 70 0 0 chr6 53479216 53479259 -135800295 + (CA)n Simple_repeat Simple_repeat 2 44 0 467 282 64 18 chr6 53479259 53479336 -135800218 + L1MC4a LINE L1 5945 6017 -104 2546 40 0 0 chr6 53479376 53479675 -135799879 - AluY SINE Alu -12 299 1 940 171 0 17 chr6 53479814 53479989 -135799565 + AluJb SINE Alu 134 305 -7 1104 171 139 86 chr6 53480044 53480324 -135799230 - AluJo SINE Alu -7 295 1 2105 109 13 0 chr6 53480398 53480702 -135798852 - AluSp SINE Alu -5 308 1 25 65 0 0 chr6 53480959 53481005 -135798549 + AT_rich Low_complexity Low_complexity 1 46 0 1156 75 0 0 chr6 53481582 53481728 -135797826 + AluSq/x SINE Alu 1 146 -166 2533 46 0 0 chr6 53481728 53482033 -135797521 + AluY SINE Alu 1 305 -6 1496 164 69 11 chr6 53482108 53482382 -135797172 + AluJb SINE Alu 15 304 -8 2109 126 0 0 chr6 53482754 53483064 -135796490 - AluSx SINE Alu -2 310 1 1941 152 3 0 chr6 53483070 53483367 -135796187 - AluJo SINE Alu -14 298 1 1884 110 0 74 chr6 53483528 53483837 -135795717 - AluSx SINE Alu -20 292 7 1394 257 161 14 chr6 53483851 53484291 -135795263 + LTR33 LTR ERVL 10 514 -7 2030 125 0 0 chr6 53484610 53484907 -135794647 - AluSq SINE Alu -15 298 2 594 181 87 14 chr6 53484916 53485054 -135794500 - AluSg/x SINE Alu -6 304 157 2172 90 10 3 chr6 53485297 53485630 -135793924 - AluSq SINE Alu 0 313 1 827 157 0 15 chr6 53485630 53485764 -135793790 - AluJo/FLAM SINE Alu -180 132 1 21 0 0 0 chr6 53486015 53486036 -135793518 + AT_rich Low_complexity Low_complexity 1 21 0 373 379 49 51 chr6 53486478 53486613 -135792941 - L2 LINE L2 -7 3265 3131 1833 188 12 12 chr6 53486613 53486879 -135792675 - MER7A DNA MER2_type -2695 343 77 2167 84 3 7 chr6 53486879 53487206 -135792348 - AluSp SINE Alu 0 313 1 1833 188 12 12 chr6 53487206 53487284 -135792270 - MER7A DNA MER2_type -2960 78 1 373 379 49 51 chr6 53487284 53487539 -135792015 - L2 LINE L2 -141 3131 2876 745 168 0 16 chr6 53487760 53487885 -135791669 - FLAM_C SINE Alu -10 123 1 462 217 87 9 chr6 53488451 53488566 -135790988 - L2 LINE L2 -1 3312 3189 2218 92 0 3 chr6 53488603 53488897 -135790657 + AluY SINE Alu 1 293 -18 808 188 52 0 chr6 53489243 53489397 -135790157 - AluJb SINE Alu -17 295 134 1845 159 0 7 chr6 53489397 53489698 -135789856 - AluJb SINE Alu -13 299 1 2115 108 0 0 chr6 53489707 53490014 -135789540 - AluSq SINE Alu 0 307 1 2096 93 7 0 chr6 53490056 53490366 -135789188 - AluY SINE Alu 0 312 1 346 202 0 11 chr6 53490371 53490465 -135789089 - L1MC5 LINE L1 -182 7779 7687 1757 62 13 4 chr6 53490475 53490702 -135788852 + AluSc SINE Alu 65 293 -16 2163 101 7 0 chr6 53491016 53491313 -135788241 - AluSp SINE Alu -14 299 1 1550 45 50 20 chr6 53491969 53492171 -135787383 - L1PA7 LINE L1 -141 6013 5806 1725 106 18 115 chr6 53492314 53492653 -135786901 - AluSq SINE Alu -7 306 1 2133 128 0 0 chr6 53492658 53492970 -135786584 - AluSx SINE Alu 0 312 1 244 148 296 0 chr6 53493621 53493675 -135785879 + L2 LINE L2 3201 3270 -2 3704 230 71 94 chr6 53493942 53494224 -135785330 + L1MEc LINE L1 49 336 -6060 2465 57 0 0 chr6 53494224 53494523 -135785031 + AluSc SINE Alu 1 299 -10 3704 230 71 94 chr6 53494523 53495061 -135784493 + L1MEc LINE L1 336 885 -5511 1306 158 131 15 chr6 53495061 53495321 -135784233 + AluJo SINE Alu 1 290 -12 3704 230 71 94 chr6 53495321 53495633 -135783921 + L1MEc LINE L1 885 1203 -5193 1821 154 0 10 chr6 53495633 53495925 -135783629 + AluJb SINE Alu 1 289 -23 3704 230 71 94 chr6 53495925 53496423 -135783131 + L1MEc LINE L1 1203 1639 -4757 1702 159 0 4 chr6 53496423 53496700 -135782854 - AluJb SINE Alu -32 280 5 3704 230 71 94 chr6 53496700 53496876 -135782678 + L1MEc LINE L1 1639 1817 -4579 705 156 0 0 chr6 53497119 53497228 -135782326 - AluJb SINE Alu -13 299 191 247 191 29 0 chr6 53497235 53497303 -135782251 + (TA)n Simple_repeat Simple_repeat 1 70 0 250 224 20 51 chr6 53497305 53497403 -135782151 + L1MC4 LINE L1 6608 6702 -1340 1814 100 4 15 chr6 53497403 53497664 -135781890 - AluSx SINE Alu -10 302 45 1467 133 4 13 chr6 53497792 53498026 -135781528 - AluSg/x SINE Alu -10 302 71 2154 114 0 7 chr6 53498069 53498375 -135781179 - AluSx SINE Alu -8 304 1 245 143 0 0 chr6 53498558 53498600 -135780954 - L1MC5 LINE L1 -217 7744 7703 1992 109 0 33 chr6 53498605 53498907 -135780647 - AluSg SINE Alu -16 294 3 1713 171 0 20 chr6 53498911 53499210 -135780344 - AluJb SINE Alu -19 293 1 2169 85 0 7 chr6 53499331 53499624 -135779930 - AluSx SINE Alu -21 291 1 1334 52 0 11 chr6 53499638 53499812 -135779742 - L1PA8 LINE L1 0 6172 6001 324 193 24 0 chr6 53499821 53499904 -135779650 - L1MC5 LINE L1 -370 7591 7507 398 209 104 0 chr6 53500029 53500144 -135779410 - L1MC5 LINE L1 -442 7519 7393 2370 84 3 0 chr6 53500392 53500703 -135778851 - AluSp SINE Alu -1 312 1 200 283 0 0 chr6 53500995 53501041 -135778513 + L2 LINE L2 3190 3235 -37 335 312 130 26 chr6 53501042 53501212 -135778342 - L2 LINE L2 -1 3312 3161 1675 145 7 54 chr6 53501212 53501360 -135778194 - AluJo SINE Alu -29 283 130 1799 145 10 0 chr6 53501360 53501649 -135777905 - AluSx SINE Alu -20 292 1 2103 105 3 19 chr6 53501659 53501973 -135777581 - AluSx SINE Alu -3 309 1 1675 145 7 54 chr6 53501973 53502110 -135777444 - AluJo SINE Alu -191 121 1 335 312 130 26 chr6 53502110 53502208 -135777346 - L2 LINE L2 -152 3161 3016 194 329 14 0 chr6 53502261 53502334 -135777220 - L2 LINE L2 -1722 1592 1519 2078 106 0 0 chr6 53502361 53502645 -135776909 - AluSx SINE Alu -15 297 14 309 125 0 0 chr6 53502672 53502712 -135776842 - Alu SINE Alu -257 46 7 309 125 0 0 chr6 53502732 53502772 -135776782 - Alu SINE Alu -256 46 7 309 125 0 0 chr6 53502792 53502832 -135776722 - Alu SINE Alu -255 46 7 232 39 0 0 chr6 53502852 53502878 -135776676 - AluY SINE Alu -87 46 21 2331 65 0 3 chr6 53502921 53503213 -135776341 - AluY SINE Alu -15 296 6 393 163 112 10 chr6 53503256 53503354 -135776200 + MER112 DNA MER1_type 83 190 -70 1748 159 7 20 chr6 53503356 53503658 -135775896 + AluJo SINE Alu 1 298 -14 288 293 141 20 chr6 53503726 53503924 -135775630 - L2 LINE L2 -1819 1495 1274 444 311 193 38 chr6 53504185 53504414 -135775140 + L2 LINE L2 1349 1541 -1773 2230 85 3 16 chr6 53504414 53504720 -135774834 - AluSx SINE Alu -10 302 1 444 311 193 38 chr6 53504720 53505376 -135774178 + L2 LINE L2 1541 2371 -943 322 151 66 33 chr6 53505409 53505595 -135773959 - MLT1H LTR MaLR -6 543 253 651 281 80 18 chr6 53505845 53506119 -135773435 - MLT1H LTR MaLR -256 293 3 2142 91 0 13 chr6 53506135 53506442 -135773112 - AluY SINE Alu -8 303 1 988 111 0 0 chr6 53506442 53506577 -135772977 - AluSq/x SINE Alu -177 135 1 677 232 92 5 chr6 53506581 53506766 -135772788 - MIR SINE MIR -10 252 52 259 303 0 15 chr6 53506783 53506849 -135772705 - MIR SINE MIR -181 81 17 354 309 147 28 chr6 53507050 53507335 -135772219 + L2 LINE L2 2594 2912 -402 232 314 81 12 chr6 53507375 53507461 -135772093 - L2 LINE L2 -44 3228 3137 192 77 0 0 chr6 53507603 53507629 -135771925 + (A)n Simple_repeat Simple_repeat 1 26 0 528 213 0 28 chr6 53507677 53507785 -135771769 - L2 LINE L2 0 3313 3209 697 228 95 0 chr6 53507883 53508041 -135771513 + MER5B DNA MER1_type 6 178 0 539 292 66 57 chr6 53508069 53508435 -135771119 - L2 LINE L2 -452 2862 2494 361 306 134 0 chr6 53508714 53508848 -135770706 + L2 LINE L2 3119 3270 -2 2033 96 3 51 chr6 53508853 53509165 -135770389 + AluSp SINE Alu 1 297 -16 688 72 0 21 chr6 53509165 53509262 -135770292 + AluSp SINE Alu 39 133 -180 285 29 0 0 chr6 53509446 53509480 -135770074 + (TTA)n Simple_repeat Simple_repeat 1 34 0 792 155 0 0 chr6 53509480 53509596 -135769958 - FLAM_C SINE Alu -27 116 1 1682 135 3 75 chr6 53509631 53509949 -135769605 + AluSx SINE Alu 1 295 -17 1740 106 28 4 chr6 53510072 53510326 -135769228 + AluSx SINE Alu 10 269 -43 22 0 0 0 chr6 53510334 53510356 -135769198 + AT_rich Low_complexity Low_complexity 1 22 0 311 261 28 11 chr6 53510356 53510464 -135769090 + MIR SINE MIR 54 165 -65 1735 151 33 20 chr6 53510516 53510820 -135768734 + AluJb SINE Alu 1 308 -4 309 313 23 55 chr6 53511448 53511557 -135767997 + L2 LINE L2 3149 3255 -17 1466 149 87 11 chr6 53511557 53511833 -135767721 + AluJb SINE Alu 1 297 -15 309 313 23 55 chr6 53511833 53511851 -135767703 + L2 LINE L2 3255 3272 0 212 318 32 0 chr6 53512050 53512113 -135767441 - MIR SINE MIR -50 212 148 2187 129 0 0 chr6 53512429 53512740 -135766814 + AluSx SINE Alu 1 311 -1 2397 80 0 0 chr6 53512850 53513152 -135766402 + AluSx SINE Alu 1 302 -10 1707 137 49 14 chr6 53513157 53513442 -135766112 + AluJb SINE Alu 2 296 -16 2224 96 0 3 chr6 53513547 53513849 -135765705 - AluY SINE Alu -10 301 1 811 143 60 0 chr6 53514903 53515036 -135764518 - AluJo SINE Alu -171 141 1 1847 126 13 32 chr6 53515451 53515650 -135763904 + AluSx SINE Alu 1 193 -119 2448 66 0 0 chr6 53515650 53515955 -135763599 + AluY SINE Alu 2 306 -5 1847 126 13 32 chr6 53515955 53516065 -135763489 + AluSx SINE Alu 193 304 -8 21 57 0 0 chr6 53516186 53516221 -135763333 + AT_rich Low_complexity Low_complexity 1 35 0 185 339 105 73 chr6 53516508 53516632 -135762922 - L2 LINE L2 -40 3232 3105 258 308 170 6 chr6 53516876 53517058 -135762496 - L2 LINE L2 -542 2772 2561 1764 226 102 37 chr6 53517903 53518412 -135761142 - MLT1F LTR MaLR 0 542 1 232 198 198 63 chr6 53518417 53518543 -135761011 - L2 LINE L2 -10 3303 3161 620 208 102 37 chr6 53518685 53518901 -135760653 + MER112 DNA MER1_type 22 251 -9 190 319 22 44 chr6 53519006 53519097 -135760457 + L2 LINE L2 2947 3035 -237 1291 113 0 0 chr6 53519114 53519300 -135760254 - AluSg/x SINE Alu -7 305 120 2293 82 0 3 chr6 53519303 53519606 -135759948 - AluSq SINE Alu -11 302 1 1793 82 37 0 chr6 53519627 53519872 -135759682 - AluSq SINE Alu -59 254 1 354 236 79 102 chr6 53520885 53520980 -135758574 - L2 LINE L2 -127 3145 3049 571 251 92 21 chr6 53520980 53521219 -135758335 - MER112 DNA MER1_type 0 256 1 354 236 79 102 chr6 53521219 53521339 -135758215 - L2 LINE L2 -223 3049 2935 1317 128 9 28 chr6 53521751 53521962 -135757592 - LTR48B LTR ERV1 0 644 438 2177 98 3 0 chr6 53521972 53522268 -135757286 - AluSx SINE Alu -15 297 1 26 0 0 0 chr6 53522270 53522296 -135757258 + AT_rich Low_complexity Low_complexity 1 26 0 669 164 0 0 chr6 53522303 53522407 -135757147 - FLAM_C SINE Alu -38 105 2 2164 97 0 3 chr6 53522408 53522706 -135756848 - AluSx SINE Alu -15 297 1 290 182 0 0 chr6 53522724 53522768 -135756786 - AluJb SINE Alu -65 237 194 1331 198 138 21 chr6 53522771 53523155 -135756399 - LTR48B LTR ERV1 -215 429 1 2267 81 0 7 chr6 53523829 53524125 -135755429 - AluSq SINE Alu -19 294 1 1998 117 0 52 chr6 53524902 53525227 -135754327 - AluSg SINE Alu -2 308 1 2128 130 0 0 chr6 53525231 53525538 -135754016 - AluJb SINE Alu -5 307 1 454 259 37 29 chr6 53525543 53525701 -135753853 - MIR SINE MIR -36 172 55 1002 263 22 4 chr6 53526098 53526326 -135753228 - MIR SINE MIR -13 249 18 24 32 0 0 chr6 53526864 53526895 -135752659 + AT_rich Low_complexity Low_complexity 1 31 0 460 304 73 23 chr6 53527195 53527415 -135752139 + MIR SINE MIR 21 251 -11 661 164 17 9 chr6 53527589 53527705 -135751849 + FLAM_C SINE Alu 1 117 -16 1421 88 0 44 chr6 53527728 53527933 -135751621 - AluSg/x SINE Alu -32 280 85 841 216 0 0 chr6 53527961 53528114 -135751440 + FRAM SINE Alu 1 153 -13 459 0 0 0 chr6 53528114 53528165 -135751389 + (CA)n Simple_repeat Simple_repeat 2 52 0 245 152 0 0 chr6 53528557 53528603 -135750951 - AluJb SINE Alu 0 302 257 1362 119 25 10 chr6 53528605 53528806 -135750748 - AluJb SINE Alu -108 204 1 1511 161 68 14 chr6 53528811 53529091 -135750463 - AluJo SINE Alu -13 299 5 202 29 57 0 chr6 53529616 53529651 -135749903 + (TTG)n Simple_repeat Simple_repeat 2 38 0 2255 73 4 0 chr6 53529652 53529927 -135749627 - AluSx SINE Alu -36 276 1 318 26 0 0 chr6 53530475 53530514 -135749040 + (TG)n Simple_repeat Simple_repeat 1 39 0 36 0 0 0 chr6 53530669 53530705 -135748849 + AT_rich Low_complexity Low_complexity 1 36 0 599 118 11 0 chr6 53530986 53531079 -135748475 - AluY SINE Alu -6 305 212 * 772 132 9 0 chr6 53531071 53531185 -135748369 - AluJb SINE Alu -129 183 69 387 0 0 0 chr6 53531193 53531236 -135748318 + (TTTTTA)n Simple_repeat Simple_repeat 1 43 0 637 190 0 0 chr6 53531287 53531403 -135748151 - FLAM_C SINE Alu -27 116 1 387 0 0 0 chr6 53531635 53531678 -135747876 + (TG)n Simple_repeat Simple_repeat 2 44 0 496 226 10 0 chr6 53531696 53531798 -135747756 - AluJo SINE Alu -93 219 117 2249 87 0 39 chr6 53531890 53532201 -135747353 + AluSq SINE Alu 1 299 -14 2210 111 3 7 chr6 53532373 53532671 -135746883 + AluSx SINE Alu 1 297 -15 766 251 203 34 chr6 53533277 53533984 -135745570 - L2 LINE L2 0 3313 2473 2378 80 13 0 chr6 53533989 53534289 -135745265 + AluSp SINE Alu 1 304 -9 293 236 178 69 chr6 53534688 53534862 -135744692 + MIR SINE MIR 31 223 -39 2000 149 0 7 chr6 53534915 53535217 -135744337 + AluSx SINE Alu 1 300 -12 2001 160 6 9 chr6 53535223 53535573 -135743981 + L1PB4 LINE L1 5804 6152 -4 23 33 0 0 chr6 53535604 53535634 -135743920 + AT_rich Low_complexity Low_complexity 1 30 0 1856 138 4 0 chr6 53535638 53535899 -135743655 + AluSq SINE Alu 1 262 -51 488 118 0 0 chr6 53535931 53536007 -135743547 + MER2 DNA MER2_type 85 160 -185 347 135 0 0 chr6 53536020 53536072 -135743482 - MER66B LTR ERV1 -140 346 295 578 232 108 36 chr6 53536073 53536267 -135743287 + MER2 DNA MER2_type 137 344 -1 396 200 118 52 chr6 53536268 53536311 -135743243 + Charlie4 DNA MER1_type 149 188 -320 774 169 0 0 chr6 53536311 53536429 -135743125 - FLAM_C SINE Alu -14 119 2 396 200 118 52 chr6 53536429 53536520 -135743034 + Charlie4 DNA MER1_type 188 292 -216 2185 101 14 7 chr6 53536520 53536817 -135742737 - AluSc SINE Alu -10 299 1 288 161 18 0 chr6 53536817 53536873 -135742681 - L1MB3 LINE L1 -104 6079 6023 1882 126 3 44 chr6 53537093 53537279 -135742275 - AluSx SINE Alu 0 311 119 216 0 0 0 chr6 53537279 53537303 -135742251 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1775 141 0 0 chr6 53537303 53537552 -135742002 - AluSg SINE Alu -27 283 35 1882 126 3 44 chr6 53537552 53537687 -135741867 - AluSx SINE Alu -190 121 1 1196 146 0 0 chr6 53537761 53537939 -135741615 - AluSg/x SINE Alu 0 312 135 2143 121 7 0 chr6 53538194 53538491 -135741063 + AluSx SINE Alu 1 299 -13 2223 118 3 3 chr6 53538824 53539129 -135740425 + AluSx SINE Alu 1 305 -7 1436 197 102 7 chr6 53539217 53539501 -135740053 + AluJb SINE Alu 2 312 0 222 128 0 0 chr6 53539627 53539666 -135739888 + (CA)n Simple_repeat Simple_repeat 1 39 0 877 208 10 29 chr6 53539667 53539874 -135739680 - L1MC4 LINE L1 -157 7885 7683 665 163 0 73 chr6 53539913 53539962 -135739592 - FLAM_A SINE Alu -185 126 75 2452 55 24 0 chr6 53539962 53540251 -135739303 - AluY SINE Alu -15 296 1 665 163 0 73 chr6 53540251 53540324 -135739230 - FLAM_A SINE Alu -236 75 13 1871 114 0 0 chr6 53540336 53540613 -135738941 - AluSx SINE Alu 0 315 39 3809 193 117 85 chr6 53540629 53540748 -135738806 - L1MC4 LINE L1 -366 7676 7562 2074 100 14 4 chr6 53540748 53541053 -135738501 - AluSp SINE Alu 0 309 2 3809 193 117 85 chr6 53541053 53542033 -135737521 - L1MC4 LINE L1 -480 7562 6523 2282 110 0 0 chr6 53542033 53542332 -135737222 - AluSx SINE Alu -13 299 1 3809 193 117 85 chr6 53542332 53542554 -135737000 - L1MC4 LINE L1 -1519 6523 6310 1659 181 19 10 chr6 53542554 53542863 -135736691 + AluJb SINE Alu 1 312 0 2352 109 0 0 chr6 53543519 53543823 -135735731 - AluSg SINE Alu -6 304 1 2337 99 0 7 chr6 53543846 53544148 -135735406 - AluSx SINE Alu -10 302 3 21 0 0 0 chr6 53544303 53544324 -135735230 + AT_rich Low_complexity Low_complexity 1 21 0 237 220 8 127 chr6 53544324 53544373 -135735181 - L1MC4a LINE L1 -1640 6168 6139 2369 99 0 0 chr6 53544373 53544675 -135734879 + AluSx SINE Alu 1 302 -10 237 220 8 127 chr6 53544675 53544743 -135734811 - L1MC4a LINE L1 -1669 6139 6065 437 233 44 18 chr6 53544965 53545187 -135734367 - L1MC4 LINE L1 -131 7911 7618 572 240 114 70 chr6 53545303 53545582 -135733972 - L1MC4 LINE L1 -635 7407 7142 2399 89 0 0 chr6 53545582 53545875 -135733679 + AluSx SINE Alu 1 293 -19 1759 103 4 33 chr6 53545878 53546120 -135733434 + AluSx SINE Alu 57 291 -21 572 240 114 70 chr6 53546120 53546223 -135733331 - L1MC4 LINE L1 -901 7141 7004 766 137 8 0 chr6 53546230 53546347 -135733207 - FLAM_C SINE Alu -15 118 1 521 249 78 28 chr6 53546362 53546579 -135732975 - L1MC5 LINE L1 -26 7935 7708 846 236 43 43 chr6 53546605 53546863 -135732691 - L1MC4 LINE L1 -997 7045 6788 642 164 86 0 chr6 53546972 53547088 -135732466 - FLAM_C SINE Alu -5 138 13 2303 97 3 0 chr6 53547107 53547444 -135732110 - AluY SINE Alu 0 311 1 1318 109 6 6 chr6 53547446 53547629 -135731925 - AluSg/x SINE Alu -18 294 112 2187 120 3 7 chr6 53547695 53548004 -135731550 + AluSx SINE Alu 1 308 -4 2367 79 7 3 chr6 53548087 53548390 -135731164 - AluSg SINE Alu -6 304 1 194 227 0 0 chr6 53548954 53548998 -135730556 + MIR SINE MIR 103 146 -116 * 725 228 0 23 chr6 53548997 53549168 -135730386 - MER5B DNA MER1_type -11 167 1 189 239 0 0 chr6 53549654 53549700 -135729854 - L2 LINE L2 0 3313 3268 2369 84 0 7 chr6 53549760 53550056 -135729498 - AluY SINE Alu -15 296 3 210 275 147 37 chr6 53550100 53550318 -135729236 - L2 LINE L2 -183 3089 2848 320 299 180 42 chr6 53550352 53550697 -135728857 - L2 LINE L2 -684 2630 2201 2301 81 10 19 chr6 53550697 53551005 -135728549 - AluSg SINE Alu -5 305 1 320 299 180 42 chr6 53551005 53551131 -135728423 - L2 LINE L2 -1113 2201 2094 2570 55 7 0 chr6 53551133 53551442 -135728112 + AluY SINE Alu 1 311 0 200 335 165 8 chr6 53551447 53551713 -135727841 - L2 LINE L2 -1304 2010 1703 1172 107 41 0 chr6 53552099 53552290 -135727264 - AluSg/x SINE Alu 0 334 137 316 221 95 179 chr6 53552622 53552685 -135726869 + MER5A DNA MER1_type 5 72 -117 2335 57 30 27 chr6 53552685 53552984 -135726570 + AluY SINE Alu 1 300 -11 316 221 95 179 chr6 53552984 53552998 -135726556 + MER5A DNA MER1_type 72 86 -103 2175 82 25 0 chr6 53552998 53553323 -135726231 + AluSg SINE Alu 1 332 0 316 221 95 179 chr6 53553323 53553431 -135726123 + MER5A DNA MER1_type 86 189 0 263 250 0 0 chr6 53553554 53553610 -135725944 - MER91 DNA MER1_type 0 196 141 1100 182 13 139 chr6 53553754 53553890 -135725664 - L1M4 LINE L1 -1982 4164 4012 1460 194 59 0 chr6 53553890 53554163 -135725391 + AluSg SINE Alu 6 294 -16 1100 182 13 139 chr6 53554163 53554399 -135725155 - L1M4 LINE L1 -2134 4012 3839 1532 120 147 8 chr6 53554399 53554546 -135725008 + AluSx SINE Alu 1 126 -186 1572 98 15 0 chr6 53554546 53554749 -135724805 + AluSq SINE Alu 1 206 -107 2537 74 0 0 chr6 53554753 53555062 -135724492 + AluY SINE Alu 3 311 0 1532 120 147 8 chr6 53555062 53555168 -135724386 + AluSx SINE Alu 128 295 -17 1042 165 0 6 chr6 53555168 53555332 -135724222 + AluJb SINE Alu 134 296 -16 1586 146 97 0 chr6 53555466 53555734 -135723820 + AluJb SINE Alu 1 294 -18 1440 201 15 4 chr6 53556025 53556289 -135723265 - AluJb SINE Alu -45 267 1 2405 77 7 0 chr6 53556345 53556642 -135722912 - AluY SINE Alu -12 299 1 1842 120 67 11 chr6 53556673 53556974 -135722580 + AluSx SINE Alu 1 316 0 2259 114 0 7 chr6 53557141 53557447 -135722107 + AluSx SINE Alu 1 304 -8 1967 120 55 0 chr6 53557511 53557785 -135721769 + AluSc SINE Alu 5 293 -16 2239 108 20 0 chr6 53557812 53558109 -135721445 + AluSx SINE Alu 1 303 -9 682 221 0 0 chr6 53558144 53558266 -135721288 + FLAM_A SINE Alu 1 122 -11 2409 93 0 0 chr6 53559283 53559583 -135719971 + AluSx SINE Alu 1 300 -12 340 244 0 23 chr6 53559588 53559674 -135719880 - HsTC2 DNA Tc2 -14 1884 1801 1762 100 123 0 chr6 53559719 53559988 -135719566 + AluJb SINE Alu 1 302 0 1603 176 57 4 chr6 53561104 53561383 -135718171 - AluJb SINE Alu -14 298 5 1808 173 0 10 chr6 53561412 53561724 -135717830 - AluJo SINE Alu -3 309 1 247 182 0 0 chr6 53561737 53561792 -135717762 - L1MA4 LINE L1 0 6300 6246 1816 149 11 7 chr6 53562168 53562449 -135717105 + AluJb SINE Alu 7 288 -24 249 33 0 0 chr6 53562450 53562480 -135717074 + (ATG)n Simple_repeat Simple_repeat 1 30 0 1835 123 43 7 chr6 53562948 53563224 -135716330 + AluJb SINE Alu 1 286 -26 2249 98 3 0 chr6 53563270 53563556 -135715998 - AluSx SINE Alu -4 308 22 1115 155 0 0 chr6 53564357 53564518 -135715036 + FAM SINE Alu 13 173 -12 198 0 0 0 chr6 53564518 53564540 -135715014 + (TA)n Simple_repeat Simple_repeat 2 23 0 2282 97 7 10 chr6 53564706 53565014 -135714540 - AluSx SINE Alu -5 307 1 2414 99 0 0 chr6 53565137 53565439 -135714115 + AluSx SINE Alu 1 302 -10 2282 85 4 0 chr6 53565439 53565720 -135713834 + AluSp SINE Alu 1 282 -31 198 0 0 0 chr6 53565723 53565745 -135713809 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2217 102 0 10 chr6 53566012 53566307 -135713247 + AluSg SINE Alu 1 292 -18 2456 61 0 14 chr6 53566554 53566848 -135712706 - AluY SINE Alu -21 290 1 312 272 61 88 chr6 53567448 53567595 -135711959 - MIR SINE MIR -99 163 21 234 154 39 0 chr6 53567694 53567746 -135711808 - L1MB8 LINE L1 -13 6165 6112 2270 100 3 0 chr6 53567748 53568037 -135711517 + AluSp SINE Alu 1 290 -23 617 64 13 4 chr6 53568063 53568232 -135711322 + AluSx SINE Alu 58 297 -13 502 261 9 0 chr6 53568232 53568347 -135711207 - L1MB7 LINE L1 -57 6127 6012 2162 131 0 0 chr6 53568620 53568926 -135710628 + AluSx SINE Alu 1 306 -6 550 148 0 0 chr6 53568961 53569042 -135710512 + AluS SINE Alu 4 84 -229 277 275 11 11 chr6 53569043 53569134 -135710420 + L1MC4a LINE L1 5852 5942 -1866 22 0 0 0 chr6 53569138 53569160 -135710394 + AT_rich Low_complexity Low_complexity 1 22 0 254 103 0 26 chr6 53569640 53569679 -135709875 + Alu SINE Alu 2 39 -262 2542 63 3 0 chr6 53569949 53570251 -135709303 - AluY SINE Alu -8 303 1 2168 95 3 39 chr6 53570650 53570785 -135708769 + AluSx SINE Alu 1 139 -173 2348 90 0 10 chr6 53570785 53571086 -135708468 + AluSq SINE Alu 1 298 -15 2168 95 3 39 chr6 53571086 53571256 -135708298 + AluSx SINE Alu 139 295 -17 21 0 0 0 chr6 53572816 53572837 -135706717 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr6 53575269 53575307 -135704247 + AT_rich Low_complexity Low_complexity 1 38 0 1883 88 84 8 chr6 53575778 53576064 -135703490 - AluY SINE Alu 0 306 1 2337 81 3 10 chr6 53576677 53576972 -135702582 + AluSp SINE Alu 1 293 -20 292 254 66 41 chr6 53577343 53577465 -135702089 - L2 LINE L2 -6 3266 3142 1727 158 17 10 chr6 53577543 53577834 -135701720 + AluJo SINE Alu 1 293 -19 207 0 0 0 chr6 53577963 53577986 -135701568 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1966 107 11 18 chr6 53577988 53578269 -135701285 - AluSp SINE Alu -29 284 6 2084 104 19 36 chr6 53578421 53578728 -135700826 + AluSx SINE Alu 1 302 -10 2028 127 0 35 chr6 53579022 53579336 -135700218 + AluSx SINE Alu 1 303 -9 2171 118 3 22 chr6 53579374 53579688 -135699866 + AluSx SINE Alu 1 308 -4 2385 104 3 0 chr6 53579690 53579997 -135699557 + AluSp SINE Alu 1 308 -5 1036 184 5 0 chr6 53580574 53580759 -135698795 - AluJb SINE Alu -2 310 125 2439 94 7 3 chr6 53580771 53581080 -135698474 - AluSg SINE Alu 0 310 1 2273 104 0 3 chr6 53581080 53581377 -135698177 - AluY SINE Alu -15 296 1 2134 128 0 16 chr6 53581381 53581686 -135697868 - AluSx SINE Alu -12 300 1 270 136 0 0 chr6 53581689 53581733 -135697821 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 1920 154 0 7 chr6 53581733 53582019 -135697535 - AluJb SINE Alu -28 284 1 949 111 0 0 chr6 53582019 53582145 -135697409 - AluJb SINE Alu -176 136 11 2564 71 3 0 chr6 53582319 53582630 -135696924 + AluSx SINE Alu 1 312 0 2342 114 0 0 chr6 53582636 53582943 -135696611 + AluSc SINE Alu 1 307 -2 2446 96 3 6 chr6 53583174 53583487 -135696067 + AluSx SINE Alu 1 312 0 357 32 0 129 chr6 53583726 53583788 -135695766 - AluSx SINE Alu -4 298 245 1523 126 0 0 chr6 53583789 53583987 -135695567 - AluSx SINE Alu -114 198 1 2089 114 7 20 chr6 53584220 53584519 -135695035 - AluSx SINE Alu -17 295 1 222 250 39 0 chr6 53584891 53584943 -135694611 - L2 LINE L2 -51 3221 3168 21 0 0 0 chr6 53584961 53584982 -135694572 + AT_rich Low_complexity Low_complexity 1 21 0 383 234 158 82 chr6 53585025 53585082 -135694472 + MER5A DNA MER1_type 20 71 -118 2637 27 17 0 chr6 53585082 53585379 -135694175 + AluY SINE Alu 1 302 -9 383 234 158 82 chr6 53585379 53585479 -135694075 + MER5A DNA MER1_type 71 189 0 1557 97 170 8 chr6 53585544 53585803 -135693751 - AluSx SINE Alu -1 301 1 713 79 0 0 chr6 53585893 53585994 -135693560 - AluSx SINE Alu 0 309 209 929 42 0 34 chr6 53585996 53586115 -135693439 - AluSx SINE Alu -198 115 1 484 238 144 25 chr6 53586169 53586329 -135693225 - MIR SINE MIR 0 262 84 2402 77 3 3 chr6 53587406 53587716 -135691838 - AluSx SINE Alu -2 310 1 617 182 12 100 chr6 53587990 53588087 -135691467 + MER2 DNA MER2_type 2 80 -265 2392 60 0 0 chr6 53588087 53588393 -135691161 + AluY SINE Alu 1 306 0 617 182 12 100 chr6 53588393 53588464 -135691090 + MER2 DNA MER2_type 80 156 -189 207 0 0 0 chr6 53588469 53588492 -135691062 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1653 140 29 36 chr6 53588500 53588641 -135690913 - AluSx SINE Alu -36 276 136 2140 112 0 37 chr6 53588641 53588964 -135690590 - AluSx SINE Alu -1 311 1 1653 140 29 36 chr6 53588964 53589100 -135690454 - AluSx SINE Alu -176 136 1 189 0 0 0 chr6 53589188 53589209 -135690345 + (T)n Simple_repeat Simple_repeat 1 21 0 2272 106 0 3 chr6 53589226 53589518 -135690036 + AluSx SINE Alu 14 304 -8 2238 117 7 0 chr6 53589529 53589827 -135689727 + AluSx SINE Alu 1 300 -12 848 127 25 0 chr6 53589832 53589950 -135689604 - FRAM SINE Alu -35 141 21 347 296 100 46 chr6 53590679 53590919 -135688635 - L2 LINE L2 -209 3104 2852 257 335 71 13 chr6 53591065 53591220 -135688334 + L2 LINE L2 2590 2753 -561 1832 88 67 77 chr6 53591951 53592248 -135687306 + AluSc SINE Alu 1 294 -15 1854 57 52 9 chr6 53592258 53592488 -135687066 + AluY SINE Alu 55 294 -17 2432 87 0 0 chr6 53593617 53593915 -135685639 + AluSc SINE Alu 1 298 -11 2436 81 7 0 chr6 53594204 53594499 -135685055 + AluSp SINE Alu 1 297 -16 1944 141 17 20 chr6 53595062 53595361 -135684193 - AluSx SINE Alu -14 298 1 2323 113 3 3 chr6 53596062 53596364 -135683190 + AluSp SINE Alu 1 302 -11 1898 130 33 33 chr6 53598202 53598509 -135681045 - AluSx SINE Alu -5 307 1 2253 114 0 3 chr6 53598649 53598947 -135680607 + AluSg SINE Alu 1 297 -13 1351 234 53 62 chr6 53598965 53599006 -135680548 + L1MC4 LINE L1 7341 7381 -661 2379 94 0 13 chr6 53599006 53599313 -135680241 + AluSx SINE Alu 1 303 -9 1351 234 53 62 chr6 53599313 53599579 -135679975 + L1MC4 LINE L1 7381 7643 -399 1588 183 16 31 chr6 53599579 53599896 -135679658 + AluJb SINE Alu 1 312 0 1351 234 53 62 chr6 53599896 53600118 -135679436 + L1MC4 LINE L1 7643 7866 -176 1811 144 46 7 chr6 53600206 53600490 -135679064 + AluJb SINE Alu 1 295 -17 4510 190 20 47 chr6 53600574 53601570 -135677984 - LTR5 LTR ERVK 0 969 1 29484 190 9 17 chr6 53601578 53607277 -135672277 - HERVK14C LTR ERVK -29 7388 1875 2518 84 0 0 chr6 53607277 53607588 -135671966 - AluY SINE Alu 0 311 1 29484 190 9 17 chr6 53607588 53608723 -135670831 - HERVK14C LTR ERVK -5542 1875 732 4112 154 30 9 chr6 53608794 53609529 -135670025 - HERVK14C LTR ERVK -6485 758 9 4500 191 21 49 chr6 53609536 53610533 -135669021 - LTR5 LTR ERVK 0 969 1 1098 104 0 0 chr6 53610544 53610679 -135668875 + AluSp SINE Alu 1 135 -178 2571 55 3 10 chr6 53610679 53610988 -135668566 + AluY SINE Alu 1 307 -4 1175 236 68 131 chr6 53610992 53611302 -135668252 + MER21B LTR ERV1 21 349 -514 1606 195 3 10 chr6 53611302 53611599 -135667955 + AluJb SINE Alu 1 295 -17 2124 111 26 19 chr6 53611601 53611908 -135667646 + AluSc SINE Alu 1 309 0 1175 236 68 131 chr6 53611908 53612332 -135667222 + MER21B LTR ERV1 350 711 -152 241 284 39 10 chr6 53612826 53612926 -135666628 - MIR3 SINE MIR -141 67 2 1810 168 0 7 chr6 53613243 53613529 -135666025 + AluJb SINE Alu 1 284 -28 247 80 60 0 chr6 53613534 53613584 -135665970 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 1024 124 0 0 chr6 53613587 53613724 -135665830 + AluSq/x SINE Alu 1 137 -175 2197 111 3 0 chr6 53613726 53614023 -135665531 + AluSx SINE Alu 6 303 -9 361 327 29 10 chr6 53614100 53614299 -135665255 + ERVL LTR ERVL 454 698 -4864 720 349 41 41 chr6 53614329 53615037 -135664517 + ERVL LTR ERVL 861 1568 -4196 1752 278 71 13 chr6 53615066 53615612 -135663942 + ERVL LTR ERVL 4070 4647 -1117 2298 77 0 48 chr6 53615676 53615988 -135663566 - AluSg SINE Alu -13 297 1 591 122 7 191 chr6 53616098 53616178 -135663376 - FLAM_C SINE Alu -187 125 82 2372 42 42 7 chr6 53616178 53616463 -135663091 - AluY SINE Alu -13 298 4 591 122 7 191 chr6 53616463 53616529 -135663025 - FLAM_C SINE Alu -230 82 6 1942 106 35 18 chr6 53616545 53616827 -135662727 - AluY SINE Alu -24 287 1 296 82 0 20 chr6 53616930 53616979 -135662575 + (TG)n Simple_repeat Simple_repeat 2 49 0 2567 72 0 0 chr6 53617106 53617412 -135662142 + AluSg SINE Alu 1 306 -4 343 213 93 9 chr6 53617456 53617564 -135661990 - L1ME LINE L1 -303 5818 5702 2616 56 7 0 chr6 53617619 53617925 -135661629 - AluSp SINE Alu -5 308 1 204 272 211 26 chr6 53618169 53618283 -135661271 + MIR SINE MIR 61 195 -67 2618 58 6 0 chr6 53618946 53619257 -135660297 + AluSp SINE Alu 1 313 0 475 81 0 0 chr6 53619305 53619367 -135660187 - AluJ/FLAM SINE Alu -232 80 19 1688 161 126 3 chr6 53619449 53619698 -135659856 + L1MB3 LINE L1 5711 6024 -159 2496 90 3 0 chr6 53619698 53620008 -135659546 + AluSx SINE Alu 1 311 -1 1688 161 126 3 chr6 53620008 53620138 -135659416 + L1MB3 LINE L1 6024 6137 -46 261 222 0 0 chr6 53620141 53620195 -135659359 + AluSc SINE Alu 133 186 -113 256 293 27 13 chr6 53620185 53620260 -135659294 + FAM SINE Alu 75 150 -25 * 2280 97 0 19 chr6 53620260 53620571 -135658983 - AluSg SINE Alu -5 305 1 1878 129 17 40 chr6 53620668 53620970 -135658584 + AluJb SINE Alu 1 295 -17 2324 103 0 0 chr6 53620972 53621273 -135658281 + AluSc SINE Alu 1 301 -8 1596 167 47 4 chr6 53621386 53621662 -135657892 + AluJb SINE Alu 2 289 -23 835 149 0 0 chr6 53621668 53621789 -135657765 + FRAM SINE Alu 43 163 -13 1758 175 3 29 chr6 53621809 53622124 -135657430 + AluJo SINE Alu 2 308 -4 2525 73 0 3 chr6 53622164 53622466 -135657088 - AluY SINE Alu -10 301 1 407 272 154 0 chr6 53622510 53622646 -135656908 + MIR SINE MIR 52 208 -54 392 67 17 0 chr6 53624077 53624137 -135655417 + (TTA)n Simple_repeat Simple_repeat 2 62 0 2211 101 0 3 chr6 53624139 53624425 -135655129 - AluSg SINE Alu -25 285 1 396 0 0 0 chr6 53624430 53624474 -135655080 + (TTA)n Simple_repeat Simple_repeat 1 44 0 2046 125 7 0 chr6 53624474 53624753 -135654801 - AluSq SINE Alu -32 281 1 201 196 20 0 chr6 53624811 53624862 -135654692 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 2179 112 3 3 chr6 53624877 53625172 -135654382 + AluSx SINE Alu 1 295 -17 2098 97 3 28 chr6 53625172 53625494 -135654060 + AluSg SINE Alu 1 316 0 2189 60 0 0 chr6 53625692 53625943 -135653611 - AluY SINE Alu -11 300 50 365 36 0 36 chr6 53625944 53626000 -135653554 - AluSc SINE Alu 0 299 246 1604 76 5 0 chr6 53626000 53626197 -135653357 - AluY SINE Alu -113 198 1 1875 174 0 10 chr6 53626335 53626639 -135652915 + AluJb SINE Alu 1 301 -11 1554 164 87 7 chr6 53626665 53626940 -135652614 + AluJo SINE Alu 1 297 -15 2507 71 0 0 chr6 53626942 53627253 -135652301 + AluY SINE Alu 1 311 0 2561 58 0 3 chr6 53627320 53627628 -135651926 - AluY SINE Alu -4 307 1 335 135 0 0 chr6 53627663 53627715 -135651839 + L1MB8 LINE L1 6117 6168 -10 2067 105 49 7 chr6 53627715 53628000 -135651554 - AluSx SINE Alu -15 297 1 2210 121 3 3 chr6 53628000 53628305 -135651249 - AluSx SINE Alu -7 305 1 2449 95 0 0 chr6 53628313 53628619 -135650935 - AluSc SINE Alu -3 306 1 21 36 0 0 chr6 53628627 53628655 -135650899 + AT_rich Low_complexity Low_complexity 1 28 0 1755 148 46 16 chr6 53628655 53628958 -135650596 + AluSx SINE Alu 1 312 0 326 202 45 34 chr6 53628962 53629051 -135650503 - L1MC4 LINE L1 -20 8022 7933 278 323 62 0 chr6 53629177 53629273 -135650281 + L2 LINE L2 3163 3264 -49 283 234 13 13 chr6 53629290 53629367 -135650187 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 2297 81 37 10 chr6 53629370 53629668 -135649886 + AluY SINE Alu 1 306 -5 258 265 18 0 chr6 53629671 53629837 -135649717 + (TGGA)n Simple_repeat Simple_repeat 4 172 0 351 239 339 0 chr6 53630578 53630708 -135648846 - MIR SINE MIR -3 259 86 2356 78 0 0 chr6 53631594 53631890 -135647664 + AluSg SINE Alu 1 296 -14 195 286 0 0 chr6 53633129 53633178 -135646376 - L2 LINE L2 -2 3311 3263 1872 151 0 3 chr6 53633898 53634229 -135645325 - AluSx SINE Alu 0 330 1 2196 85 16 10 chr6 53634589 53634896 -135644658 - AluSg SINE Alu 0 310 2 2182 96 0 3 chr6 53634897 53635190 -135644364 - AluSg SINE Alu -18 292 1 1115 179 111 39 chr6 53635195 53635475 -135644079 - AluJo SINE Alu 0 312 13 243 298 33 66 chr6 53635511 53635632 -135643922 - L2 LINE L2 -20 3293 3177 222 271 57 79 chr6 53635694 53635834 -135643720 - MIR SINE MIR -43 219 83 243 0 0 0 chr6 53636523 53636550 -135643004 + (CTG)n Simple_repeat Simple_repeat 3 29 0 248 250 279 0 chr6 53637172 53637276 -135642278 + L2 LINE L2 3125 3257 -15 2060 132 7 0 chr6 53637783 53638093 -135641461 - AluSx SINE Alu 0 312 1 857 148 101 7 chr6 53638131 53638280 -135641274 - AluSp SINE Alu -14 299 137 1954 102 46 0 chr6 53638281 53638564 -135640990 - AluSx SINE Alu -16 296 1 2108 123 3 0 chr6 53638598 53638926 -135640628 - AluSx SINE Alu 0 312 1 256 275 208 13 chr6 53640166 53640315 -135639239 + L2 LINE L2 3127 3304 -9 678 257 74 35 chr6 53640447 53640786 -135638768 + L1MC4 LINE L1 7690 8041 -1 1850 124 65 0 chr6 53640794 53641084 -135638470 + AluSq SINE Alu 3 311 -2 1105 81 0 0 chr6 53641087 53641235 -135638319 - LTR47A LTR ERVL -304 148 1 277 336 8 33 chr6 53641616 53641738 -135637816 + MIR3 SINE MIR 45 163 -45 2179 92 0 10 chr6 53641776 53642071 -135637483 - AluSq SINE Alu -21 292 1 522 284 39 35 chr6 53643276 53643432 -135636122 + L1MC4a LINE L1 5704 5863 -1945 1983 134 3 7 chr6 53643432 53643739 -135635815 - AluSq SINE Alu -7 306 1 522 284 39 35 chr6 53643739 53643814 -135635740 + L1MC4a LINE L1 5863 5936 -1872 1720 136 73 0 chr6 53644224 53644496 -135635058 + AluSx SINE Alu 1 292 -20 251 211 64 0 chr6 53644835 53644935 -135634619 + MIR SINE MIR 85 194 -68 241 276 60 91 chr6 53646783 53646982 -135632572 - MIR SINE MIR -57 205 13 2025 109 0 7 chr6 53647090 53647403 -135632151 - AluSg1 SINE Alu 0 311 1 2190 100 3 16 chr6 53648068 53648379 -135631175 - AluSx SINE Alu 0 312 6 1634 160 44 51 chr6 53648396 53648567 -135630987 - AluJb SINE Alu -10 292 122 1235 184 6 105 chr6 53648567 53648708 -135630846 + AluSx SINE Alu 3 94 -218 1968 136 7 0 chr6 53648708 53649002 -135630552 - AluSx SINE Alu -16 296 1 1235 184 6 105 chr6 53649002 53649192 -135630362 + AluSx SINE Alu 94 301 -11 1634 160 44 51 chr6 53649192 53649314 -135630240 - AluJb SINE Alu -180 122 1 632 161 119 0 chr6 53649358 53649476 -135630078 + FLAM_C SINE Alu 2 133 0 825 148 0 15 chr6 53649708 53649843 -135629711 - FLAM_C SINE Alu 0 133 1 715 187 194 71 chr6 53650029 53650297 -135629257 + AluJb SINE Alu 2 302 0 277 252 143 50 chr6 53650458 53650577 -135628977 - MER5A DNA MER1_type -4 185 56 2091 110 3 3 chr6 53650823 53651122 -135628432 + AluSg SINE Alu 1 299 -11 271 214 114 0 chr6 53651238 53651308 -135628246 - MER91B DNA MER1_type -16 174 97 1888 88 110 0 chr6 53651311 53651583 -135627971 + AluSx SINE Alu 2 303 -9 322 277 0 12 chr6 53651608 53651691 -135627863 - MER91B DNA MER1_type -61 129 48 2283 70 3 25 chr6 53651961 53652275 -135627279 + AluY SINE Alu 1 307 -4 864 175 148 21 chr6 53652275 53652464 -135627090 - Tigger2a DNA MER2_type -218 216 4 2420 50 3 3 chr6 53652476 53652775 -135626779 - AluY SINE Alu -12 299 1 867 148 32 111 chr6 53652782 53652832 -135626722 + Tigger2a DNA MER2_type 246 298 -2420 2068 108 3 14 chr6 53652832 53653129 -135626425 + AluSx SINE Alu 1 294 -18 867 148 32 111 chr6 53653129 53653223 -135626331 + Tigger2a DNA MER2_type 298 370 -2348 1834 179 0 3 chr6 53653223 53653535 -135626019 + AluJb SINE Alu 1 311 -1 867 148 32 111 chr6 53653535 53653605 -135625949 + Tigger2a DNA MER2_type 370 444 0 1751 101 116 8 chr6 53653798 53654066 -135625488 - AluSg1 SINE Alu -12 297 1 1122 154 98 14 chr6 53654110 53654324 -135625230 + AluJb SINE Alu 70 301 -11 2435 58 0 0 chr6 53654330 53654624 -135624930 - AluY SINE Alu -17 294 1 368 207 0 0 chr6 53654682 53654764 -135624790 - L1PB4 LINE L1 -1 6155 6074 697 178 31 8 chr6 53655114 53655243 -135624311 + FLAM_A SINE Alu 1 132 -1 1611 103 18 0 chr6 53655472 53655696 -135623858 - AluSg/x SINE Alu 0 312 85 836 146 23 0 chr6 53655791 53655921 -135623633 + FLAM_C SINE Alu 2 134 -9 1608 174 43 0 chr6 53656121 53656403 -135623151 + AluJo SINE Alu 2 295 -17 2197 116 0 0 chr6 53656640 53656951 -135622603 - AluSx SINE Alu -1 311 1 1479 84 5 10 chr6 53656967 53657169 -135622385 + AluSg SINE Alu 1 201 -109 1850 132 0 7 chr6 53657169 53657447 -135622107 - AluSx SINE Alu -32 280 3 2123 117 0 7 chr6 53657564 53657864 -135621690 - AluSx SINE Alu -14 298 1 1314 94 0 0 chr6 53657920 53658091 -135621463 + AluSp SINE Alu 129 299 -14 2028 96 125 26 chr6 53658140 53658237 -135621317 - MER51B LTR ERV1 0 377 291 2357 69 10 3 chr6 53658237 53658542 -135621012 + AluY SINE Alu 1 307 -4 2028 96 125 26 chr6 53658542 53658787 -135620767 - MER51B LTR ERV1 -86 291 1 3352 137 126 132 chr6 53658791 53659113 -135620441 - MER51B-int LTR ERV1 -3 7813 7490 2069 126 0 7 chr6 53659113 53659414 -135620140 + AluSg SINE Alu 1 299 -11 3352 137 126 132 chr6 53659414 53659954 -135619600 - MER51B-int LTR ERV1 -326 7490 6790 1888 68 4 0 chr6 53659954 53660191 -135619363 + AluSp SINE Alu 1 238 -75 3352 137 126 132 chr6 53660191 53660451 -135619103 - MER51B-int LTR ERV1 -1026 6790 6530 2079 87 6 58 chr6 53660451 53660762 -135618792 - AluSq SINE Alu -18 295 1 1529 151 12 4 chr6 53660762 53661021 -135618533 - MER51B-int LTR ERV1 -1177 6360 6100 1383 99 42 0 chr6 53661021 53661213 -135618341 + AluSq SINE Alu 1 200 -113 4582 39 7 0 chr6 53661220 53661792 -135617762 + LTR10C LTR ERV1 11 586 -5 39 22 0 0 chr6 53661792 53661838 -135617716 + AT_rich Low_complexity Low_complexity 1 46 0 2172 62 10 3 chr6 53662328 53662616 -135616938 - AluY SINE Alu -21 290 1 1743 115 19 0 chr6 53662965 53663225 -135616329 + AluSp SINE Alu 1 265 -48 2082 94 3 26 chr6 53663780 53664087 -135615467 - AluY SINE Alu -11 300 1 2191 92 0 3 chr6 53664089 53664383 -135615171 - AluSp SINE Alu -20 293 1 684 100 10 0 chr6 53664408 53664508 -135615046 + AluSg/x SINE Alu 199 299 -13 523 176 25 67 chr6 53664510 53664669 -135614885 - MER4A LTR ERV1 -172 492 282 2592 134 33 75 chr6 53664711 53664890 -135614664 - MER51-int LTR ERV1 -6310 1506 1321 2192 100 13 3 chr6 53664890 53665190 -135614364 - AluSg SINE Alu -6 304 2 2592 134 33 75 chr6 53665190 53665412 -135614142 - MER51-int LTR ERV1 -6495 1321 1091 2281 103 3 0 chr6 53665412 53665724 -135613830 - AluSp SINE Alu 0 313 1 2592 134 33 75 chr6 53665724 53665748 -135613806 - MER51-int LTR ERV1 -6725 1091 1068 1952 100 0 0 chr6 53665748 53666008 -135613546 - AluSg SINE Alu -20 290 31 2592 134 33 75 chr6 53666008 53666123 -135613431 - MER51-int LTR ERV1 -6748 1068 987 1340 294 3 85 chr6 53666123 53666453 -135613101 + AluSg SINE Alu 1 303 -7 1121 56 6 19 chr6 53666454 53666516 -135613038 - MER51B-int LTR ERV1 -7656 160 99 324 48 0 0 chr6 53666516 53666558 -135612996 + (GA)n Simple_repeat Simple_repeat 1 42 0 1121 56 6 19 chr6 53666558 53666657 -135612897 - MER51B-int LTR ERV1 -7717 99 1 2189 96 116 26 chr6 53666657 53667002 -135612552 - MER51B LTR ERV1 0 377 2 1311 97 9 53 chr6 53667018 53667244 -135612310 - AluSg/x SINE Alu -1 311 96 332 323 46 50 chr6 53668336 53668562 -135610992 - MIR SINE MIR -2 260 34 2452 65 0 0 chr6 53668562 53668870 -135610684 - AluY SINE Alu -3 308 1 332 323 46 50 chr6 53668870 53668903 -135610651 - MIR SINE MIR -228 34 2 283 320 78 0 chr6 53668922 53669025 -135610529 + MIR SINE MIR 104 214 -48 802 109 8 39 chr6 53670498 53670626 -135608928 - FLAM_A SINE Alu -3 139 16 2356 75 13 0 chr6 53672849 53673154 -135606400 - AluSp SINE Alu -1 312 4 2198 103 0 10 chr6 53673835 53674137 -135605417 - AluSq SINE Alu -14 299 1 263 218 0 0 chr6 53676341 53676396 -135603158 - MER5B DNA MER1_type -1 177 123 761 235 45 0 chr6 53676427 53676627 -135602927 + L1MB7 LINE L1 5963 6171 -13 406 308 34 8 chr6 53676652 53676769 -135602785 - MER5B DNA MER1_type -48 130 11 1604 144 0 0 chr6 53678376 53678626 -135600928 + AluY SINE Alu 1 250 -61 2098 121 3 0 chr6 53678734 53679039 -135600515 + AluY SINE Alu 1 306 -5 2160 115 0 0 chr6 53679260 53679556 -135599998 - AluSx SINE Alu -16 296 1 352 200 17 0 chr6 53679681 53679741 -135599813 - AluSp SINE Alu -114 189 129 1601 144 0 41 chr6 53679814 53680105 -135599449 + AluJb SINE Alu 1 279 -33 2520 57 0 13 chr6 53680690 53681005 -135598549 - AluY SINE Alu 0 311 1 289 132 434 0 chr6 53681826 53681902 -135597652 + MER3 DNA MER1_type 2 110 -99 1204 120 0 94 chr6 53681957 53682137 -135597417 - AluSg/x SINE Alu -14 298 143 1875 81 18 29 chr6 53682137 53682410 -135597144 - AluY SINE Alu -15 296 27 1204 120 0 94 chr6 53682410 53682463 -135597091 - AluSg/x SINE Alu -169 143 87 364 132 0 53 chr6 53682464 53682540 -135597014 + MER3 DNA MER1_type 136 207 -2 2048 136 0 0 chr6 53682605 53682907 -135596647 - AluSx SINE Alu -10 302 1 1186 111 0 0 chr6 53683496 53683658 -135595896 - AluSg/x SINE Alu -11 299 138 1534 168 7 43 chr6 53684100 53684269 -135595285 - AluJb SINE Alu -16 296 141 1985 125 7 0 chr6 53684269 53684558 -135594996 - AluSq SINE Alu -20 293 3 1534 168 7 43 chr6 53684558 53684691 -135594863 - AluJb SINE Alu -171 141 5 2169 117 3 0 chr6 53684909 53685218 -135594336 + AluSx SINE Alu 1 310 -2 810 188 66 33 chr6 53685227 53685408 -135594146 + AluJo SINE Alu 125 311 -1 245 281 55 47 chr6 53686020 53686148 -135593406 + L2 LINE L2 2454 2582 -732 2186 105 3 0 chr6 53686187 53686492 -135593062 - AluSx SINE Alu -6 306 1 650 123 41 8 chr6 53686515 53686637 -135592917 - L1PB1 LINE L1 -3 6148 6023 2346 47 3 7 chr6 53686638 53686935 -135592619 - AluY SINE Alu -15 296 1 1613 98 27 110 chr6 53686970 53687298 -135592256 - AluYb8 SINE Alu -13 305 5 989 118 0 0 chr6 53687301 53687436 -135592118 - AluSg1 SINE Alu -174 135 1 2269 101 0 0 chr6 53687445 53687752 -135591802 - AluSx SINE Alu -2 310 4 210 272 12 12 chr6 53688607 53688688 -135590866 + (CCGGG)n Simple_repeat Simple_repeat 5 85 0 616 231 38 0 chr6 53689328 53689488 -135590066 - MIR3 SINE MIR -5 203 38 2372 82 3 0 chr6 53689782 53690087 -135589467 - AluSp SINE Alu -7 306 1 551 270 66 0 chr6 53691491 53691643 -135587911 - MIR SINE MIR -97 165 4 966 324 143 21 chr6 53692246 53692901 -135586653 - L3 LINE CR1 -1 1576 842 259 302 65 58 chr6 53693061 53693200 -135586354 - MER20B DNA MER1_type -620 163 24 2458 67 0 6 chr6 53694710 53695022 -135584532 - AluSq SINE Alu -3 310 1 197 392 35 21 chr6 53695055 53695198 -135584356 + L2 LINE L2 3101 3245 -27 231 296 42 0 chr6 53695376 53695447 -135584107 + L2 LINE L2 2987 3060 -212 201 196 0 0 chr6 53695657 53695703 -135583851 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 240 273 130 0 chr6 53695713 53695790 -135583764 - MIR3 SINE MIR -18 190 104 2413 58 0 0 chr6 53696078 53696369 -135583185 - AluY SINE Alu -20 291 1 1924 174 51 53 chr6 53696499 53696542 -135583012 - MLT1C LTR MaLR 0 467 425 1777 142 6 32 chr6 53696542 53696853 -135582701 + AluJo SINE Alu 1 303 -9 1924 174 51 53 chr6 53696853 53696889 -135582665 - MLT1C LTR MaLR -42 425 390 2178 101 0 16 chr6 53696889 53697025 -135582529 + AluSq SINE Alu 1 138 -175 2279 95 0 0 chr6 53697025 53697331 -135582223 + AluSq SINE Alu 1 306 -7 2178 101 0 16 chr6 53697331 53697511 -135582043 + AluSq SINE Alu 138 312 -1 1924 174 51 53 chr6 53697511 53697879 -135581675 - MLT1C LTR MaLR -77 390 20 764 219 42 63 chr6 53697907 53698037 -135581517 - MIR SINE MIR -28 234 110 1918 95 62 4 chr6 53698037 53698310 -135581244 + AluSx SINE Alu 3 291 -21 764 219 42 63 chr6 53698310 53698417 -135581137 - MIR SINE MIR -152 110 2 2119 81 0 44 chr6 53698548 53698846 -135580708 + AluSq SINE Alu 16 300 -13 1815 172 0 6 chr6 53699129 53699443 -135580111 - AluJo SINE Alu 0 312 1 1326 116 33 19 chr6 53699561 53699776 -135579778 - AluSg/x SINE Alu -10 300 83 620 160 20 0 chr6 53699776 53699876 -135579678 - FRAM SINE Alu -62 114 13 1652 95 80 4 chr6 53699892 53700154 -135579400 - AluY SINE Alu -29 282 1 866 46 0 9 chr6 53700192 53700300 -135579254 + AluY SINE Alu 1 107 -204 963 120 0 0 chr6 53700652 53700785 -135578769 + AluJb SINE Alu 1 133 -179 2201 107 0 0 chr6 53700789 53701087 -135578467 + AluSx SINE Alu 1 298 -14 1988 131 20 3 chr6 53701592 53701897 -135577657 - AluSx SINE Alu -2 310 1 2282 76 0 0 chr6 53701979 53702270 -135577284 - AluSg SINE Alu -19 291 1 1998 134 0 16 chr6 53702273 53702579 -135576975 - AluSx SINE Alu -11 301 1 183 400 127 11 chr6 53702883 53703158 -135576396 - L2 LINE L2 -2 3311 3005 1947 123 55 0 chr6 53703182 53703475 -135576079 - AluSp SINE Alu -4 309 1 2245 74 3 14 chr6 53703639 53703935 -135575619 + AluSg SINE Alu 1 293 -17 250 100 0 0 chr6 53703946 53703986 -135575568 + Alu SINE Alu 263 302 -6 579 225 116 29 chr6 53704010 53704183 -135575371 - MIR SINE MIR -71 191 4 2167 106 0 3 chr6 53704197 53704499 -135575055 - AluSg SINE Alu -9 301 1 2128 119 3 0 chr6 53705177 53705488 -135574066 + AluSx SINE Alu 1 312 0 2194 36 65 0 chr6 53705777 53706054 -135573500 - AluY SINE Alu -16 295 1 1909 124 3 23 chr6 53706060 53706359 -135573195 - AluSx SINE Alu -19 293 1 1988 94 40 17 chr6 53706786 53707085 -135572469 - AluSx SINE Alu -6 306 1 1345 187 6 73 chr6 53707327 53707642 -135571912 - AluJo SINE Alu -18 294 1 2380 79 0 9 chr6 53707642 53707958 -135571596 - AluSq SINE Alu 0 313 1 397 174 39 214 chr6 53707967 53708248 -135571306 - L1ME3 LINE L1 -2 6160 5929 324 111 0 0 chr6 53708495 53708549 -135571005 + (CCCCAG)n Simple_repeat Simple_repeat 3 56 0 180 0 0 0 chr6 53709680 53709700 -135569854 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2165 92 0 14 chr6 53711821 53712115 -135567439 + AluSg SINE Alu 1 290 -20 244 238 83 24 chr6 53715425 53715509 -135564045 - LTR50 LTR ERVL -552 243 155 2187 101 3 13 chr6 53717604 53717912 -135561642 + AluSq SINE Alu 1 305 -8 2183 92 3 0 chr6 53717977 53718269 -135561285 - AluSc SINE Alu -16 293 1 1758 140 24 27 chr6 53721931 53722224 -135557330 + AluSx SINE Alu 1 292 -20 23 0 0 0 chr6 53723301 53723324 -135556230 + AT_rich Low_complexity Low_complexity 1 23 0 39 38 0 0 chr6 53723708 53723761 -135555793 + GC_rich Low_complexity Low_complexity 1 53 0 2342 50 23 0 chr6 53724135 53724434 -135555120 - AluY SINE Alu -5 306 1 1391 139 70 73 chr6 53724445 53724620 -135554934 - AluJb SINE Alu 0 302 128 231 36 0 0 chr6 53724620 53724648 -135554906 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1391 139 70 73 chr6 53724648 53724669 -135554885 - AluJb SINE Alu -174 128 108 2425 37 10 0 chr6 53724669 53724967 -135554587 - AluY SINE Alu -10 301 1 1391 139 70 73 chr6 53724967 53725071 -135554483 - AluJb SINE Alu -194 108 2 212 271 34 17 chr6 53725093 53725152 -135554402 - L2 LINE L2 -44 3269 3210 1741 149 3 7 chr6 53725152 53725448 -135554106 + AluJo SINE Alu 1 295 -17 1945 107 14 0 chr6 53725461 53725742 -135553812 + AluSc SINE Alu 12 296 -13 235 203 34 0 chr6 53725781 53725840 -135553714 + L1MB7 LINE L1 6105 6165 -19 680 254 148 64 chr6 53725849 53725895 -135553659 - L2 LINE L2 -173 3140 3099 2099 106 10 0 chr6 53725895 53726188 -135553366 - AluSx SINE Alu -14 298 3 680 254 148 64 chr6 53726188 53726690 -135552864 - L2 LINE L2 -214 3099 2566 2116 118 3 3 chr6 53727377 53727682 -135551872 + AluSx SINE Alu 1 305 -7 2289 86 0 7 chr6 53727686 53727988 -135551566 + AluY SINE Alu 1 300 -11 385 260 32 32 chr6 53728308 53728422 -135551132 + MIR SINE MIR 53 169 -93 1683 164 7 17 chr6 53728422 53728715 -135550839 + AluSx SINE Alu 1 290 -22 385 260 32 32 chr6 53728715 53728754 -135550800 + MIR SINE MIR 168 206 -56 905 94 16 0 chr6 53728759 53728887 -135550667 + AluSc SINE Alu 1 130 -179 1517 104 5 14 chr6 53728889 53729109 -135550445 + AluSc SINE Alu 71 288 -21 354 23 0 0 chr6 53729799 53729842 -135549712 + (CA)n Simple_repeat Simple_repeat 2 44 0 1963 129 3 16 chr6 53730082 53730393 -135549161 + AluSg SINE Alu 1 307 -3 2239 93 0 0 chr6 53730404 53730695 -135548859 + AluSg SINE Alu 1 291 -19 2192 95 0 7 chr6 53730705 53730999 -135548555 + AluSx SINE Alu 1 292 -20 1696 141 31 53 chr6 53731637 53731956 -135547598 - AluSx SINE Alu 0 312 1 2142 84 4 0 chr6 53732319 53732592 -135546962 + AluSq SINE Alu 1 274 -39 2404 65 0 0 chr6 53732624 53732917 -135546637 + AluSg SINE Alu 1 293 -17 267 227 30 0 chr6 53732917 53732977 -135546577 + L1MEd LINE L1 568 629 -5490 276 135 0 0 chr6 53732988 53733040 -135546514 - Alu SINE Alu 0 301 250 273 271 89 50 chr6 53733043 53733161 -135546393 + L1MEd LINE L1 783 895 -5224 2371 83 0 10 chr6 53733161 53733475 -135546079 + AluY SINE Alu 1 311 0 273 271 89 50 chr6 53733475 53733501 -135546053 + L1MEd LINE L1 895 919 -5200 2274 95 0 3 chr6 53733501 53733797 -135545757 + AluSq SINE Alu 1 295 -18 273 271 89 50 chr6 53733797 53733954 -135545600 + L1MEd LINE L1 919 1097 -5022 1438 208 24 0 chr6 53733954 53734252 -135545302 + AluJo SINE Alu 1 305 -7 1849 143 14 0 chr6 53734316 53734602 -135544952 - AluSx SINE Alu -22 290 1 204 67 0 0 chr6 53734605 53734635 -135544919 + (T)n Simple_repeat Simple_repeat 1 30 0 808 118 19 9 chr6 53734677 53734838 -135544716 + AluJb SINE Alu 85 292 -20 740 211 30 0 chr6 53734865 53734998 -135544556 + FAM SINE Alu 29 165 -20 2383 79 0 0 chr6 53735009 53735312 -135544242 + AluY SINE Alu 1 303 -8 1082 174 85 18 chr6 53735941 53736220 -135543334 - L1MB8 LINE L1 0 6178 5879 2308 81 3 0 chr6 53736623 53736918 -135542636 + AluSp SINE Alu 1 296 -17 2296 96 0 0 chr6 53736918 53737220 -135542334 + AluSx SINE Alu 1 302 -10 1710 131 16 64 chr6 53738232 53738354 -135541200 - 7SLRNA srpRNA srpRNA -21 299 173 2300 71 0 0 chr6 53738354 53738671 -135540883 - AluSc SINE Alu 0 317 1 1710 131 16 64 chr6 53738671 53738859 -135540695 - 7SLRNA srpRNA srpRNA -147 173 3 192 77 0 0 chr6 53738873 53738899 -135540655 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 211 319 101 34 chr6 53739293 53739412 -135540142 - MIR SINE MIR -122 140 14 2280 82 13 3 chr6 53741770 53742075 -135537479 - AluSx SINE Alu -4 308 1 180 152 0 0 chr6 53742350 53742383 -135537171 + CT-rich Low_complexity Low_complexity 1 33 0 1620 180 40 7 chr6 53743363 53743663 -135535891 + AluJb SINE Alu 1 310 -2 259 231 19 0 chr6 53743663 53743715 -135535839 + polypurine Low_complexity Low_complexity 2 54 0 551 222 12 12 chr6 53743715 53743764 -135535790 + GA-rich Low_complexity Low_complexity 3 51 -122 2354 92 0 0 chr6 53743764 53744070 -135535484 + AluSg SINE Alu 5 310 0 551 222 12 12 chr6 53744070 53744191 -135535363 + GA-rich Low_complexity Low_complexity 50 173 0 2177 106 3 19 chr6 53744366 53744677 -135534877 - AluSx SINE Alu -6 306 1 833 168 8 0 chr6 53745783 53745914 -135533640 + FLAM_C SINE Alu 1 132 -1 2143 102 6 41 chr6 53745932 53746077 -135533477 + AluSp SINE Alu 1 150 -163 2206 95 3 0 chr6 53746077 53746387 -135533167 + AluSp SINE Alu 1 311 0 2143 102 6 41 chr6 53746387 53746554 -135533000 + AluSp SINE Alu 150 303 -10 196 328 52 0 chr6 53749214 53749272 -135530282 - L2 LINE L2 -28 3285 3225 403 290 112 8 chr6 53749811 53750070 -135529484 + L1MC4a LINE L1 5915 6200 -1608 2362 70 6 22 chr6 53750793 53751108 -135528446 - AluY SINE Alu -1 310 1 603 0 0 0 chr6 53752586 53752653 -135526901 + (CA)n Simple_repeat Simple_repeat 2 68 0 205 156 0 0 chr6 53753955 53753987 -135525567 + (CA)n Simple_repeat Simple_repeat 2 33 0 259 350 0 21 chr6 53756057 53756154 -135523400 - MIR3 SINE MIR -17 191 97 869 126 0 0 chr6 53756716 53756843 -135522711 + AluJo SINE Alu 15 141 -171 1748 144 43 0 chr6 53756843 53757121 -135522433 + AluJo SINE Alu 1 290 -22 2117 104 14 0 chr6 53757129 53757418 -135522136 + AluSg SINE Alu 1 293 -17 2377 74 3 0 chr6 53758722 53759019 -135520535 - AluY SINE Alu -13 298 1 647 170 52 52 chr6 53759088 53759223 -135520331 - AluJo SINE Alu -177 135 1 1959 128 3 10 chr6 53759241 53759394 -135520160 - AluSx SINE Alu -25 287 135 2002 115 10 24 chr6 53759394 53759690 -135519864 - AluSx SINE Alu -20 292 1 1959 128 3 10 chr6 53759690 53759825 -135519729 - AluSx SINE Alu -177 135 1 464 233 262 10 chr6 53760886 53761092 -135518462 + MIR SINE MIR 2 259 -3 1606 237 38 39 chr6 53763743 53764295 -135515259 - L2 LINE L2 -3 3310 2760 2118 105 3 3 chr6 53764295 53764590 -135514964 - AluSg SINE Alu -15 295 1 1606 237 38 39 chr6 53764590 53764834 -135514720 - L2 LINE L2 -553 2760 2517 496 288 92 13 chr6 53765372 53765525 -135514029 - L2 LINE L2 0 3272 3108 2311 94 0 0 chr6 53765601 53765900 -135513654 - AluSq SINE Alu -14 299 1 1671 147 0 4 chr6 53765932 53766184 -135513370 - AluSq SINE Alu -62 251 1 1308 151 0 23 chr6 53766374 53766593 -135512961 + AluJo SINE Alu 87 300 -12 2450 71 3 0 chr6 53767112 53767420 -135512134 - AluSp SINE Alu -4 309 1 464 316 60 18 chr6 53767912 53768080 -135511474 - L2 LINE L2 -7 3265 3091 280 293 132 0 chr6 53768049 53768155 -135511399 + L2 LINE L2 3153 3272 0 * 247 246 128 21 chr6 53769291 53769478 -135510076 - MER20B DNA MER1_type -1 782 576 2253 60 6 48 chr6 53769549 53769865 -135509689 + AluY SINE Alu 3 305 -6 2799 10 0 0 chr6 53769877 53770188 -135509366 + AluYa5 SINE Alu 1 311 0 2235 97 7 0 chr6 53770238 53770537 -135509017 + AluSq SINE Alu 1 301 -12 1976 131 3 13 chr6 53770572 53770870 -135508684 + AluSx SINE Alu 1 295 -17 2007 149 0 0 chr6 53770872 53771205 -135508349 + AluSx SINE Alu 1 312 0 1961 144 0 0 chr6 53771279 53771591 -135507963 - AluSx SINE Alu 0 312 1 2224 81 14 7 chr6 53771597 53771894 -135507660 - AluSp SINE Alu -14 299 1 219 69 0 0 chr6 53772142 53772171 -135507383 + (A)n Simple_repeat Simple_repeat 1 29 0 180 0 0 0 chr6 53773247 53773267 -135506287 + (A)n Simple_repeat Simple_repeat 1 20 0 233 274 231 24 chr6 53774604 53774816 -135504738 - MER112 DNA MER1_type 0 260 5 2299 92 13 0 chr6 53775415 53775720 -135503834 + AluSq SINE Alu 1 309 -4 224 165 0 63 chr6 53778269 53778348 -135501206 + (CGGGG)n Simple_repeat Simple_repeat 1 74 0 502 190 7 92 chr6 53781166 53781232 -135498322 + MER2 DNA MER2_type 3 52 -293 2271 45 0 103 chr6 53781232 53781562 -135497992 + AluY SINE Alu 1 296 -15 502 190 7 92 chr6 53781562 53781637 -135497917 + MER2 DNA MER2_type 52 132 -213 850 176 18 12 chr6 53781637 53781802 -135497752 - FRAM SINE Alu -11 165 1 328 124 0 152 chr6 53781803 53781836 -135497718 + MER2 DNA MER2_type 122 158 -187 1541 168 43 11 chr6 53781836 53782116 -135497438 + AluJo SINE Alu 14 302 -10 2410 71 0 0 chr6 53782117 53782414 -135497140 + AluY SINE Alu 1 297 -14 328 124 0 152 chr6 53782414 53782483 -135497071 + MER2 DNA MER2_type 157 210 -135 2467 78 0 0 chr6 53782706 53783000 -135496554 + AluSx SINE Alu 1 294 -18 207 0 0 0 chr6 53783001 53783024 -135496530 + (CA)n Simple_repeat Simple_repeat 2 24 0 2230 126 3 0 chr6 53783441 53783751 -135495803 - AluSx SINE Alu -1 311 1 2473 76 0 7 chr6 53784220 53784522 -135495032 - AluSg SINE Alu -10 300 1 214 273 55 0 chr6 53784522 53784577 -135494977 + MER5A DNA MER1_type 126 183 -6 210 351 32 0 chr6 53786000 53786094 -135493460 + MER5A DNA MER1_type 44 140 -49 1919 157 0 38 chr6 53786170 53786489 -135493065 - AluJo SINE Alu -5 307 1 233 226 16 16 chr6 53786492 53786554 -135493000 + MER5A DNA MER1_type 128 189 0 330 328 22 22 chr6 53787045 53787179 -135492375 + MIR SINE MIR 31 164 -98 1898 98 63 0 chr6 53787319 53787573 -135491981 - AluSg SINE Alu -20 290 21 2459 85 0 3 chr6 53787908 53788213 -135491341 + AluSq SINE Alu 1 304 -9 433 225 179 73 chr6 53788764 53788816 -135490738 - MER91A DNA MER1_type -10 186 141 2052 120 6 35 chr6 53788816 53789132 -135490422 + AluJb SINE Alu 5 311 -1 433 225 179 73 chr6 53789132 53789230 -135490324 - MER91A DNA MER1_type -55 141 20 293 327 0 18 chr6 53789834 53789947 -135489607 + MIR SINE MIR 18 128 -80 189 307 93 27 chr6 53790199 53790274 -135489280 - MIR SINE MIR -121 141 62 1881 146 0 27 chr6 53790280 53790574 -135488980 + AluJo SINE Alu 7 292 -20 2004 129 11 0 chr6 53790671 53790992 -135488562 + AluSg SINE Alu 1 324 0 413 252 48 75 chr6 53793342 53793413 -135486141 + MIR SINE MIR 56 122 -140 2174 125 0 19 chr6 53793413 53793725 -135485829 - AluSx SINE Alu -6 306 1 413 252 48 75 chr6 53793725 53793800 -135485754 + MIR SINE MIR 122 198 -64 279 241 0 13 chr6 53793800 53793879 -135485675 + HsTC2 DNA Tc2 1 78 -1820 1125 178 51 0 chr6 53793881 53794078 -135485476 + Tigger7 DNA MER2_type 1 207 -526 2345 106 0 0 chr6 53794116 53794419 -135485135 - AluSg SINE Alu -7 303 1 1835 144 29 11 chr6 53794431 53794709 -135484845 - AluJo SINE Alu -11 301 19 725 145 21 21 chr6 53794712 53794857 -135484697 + Tigger7 DNA MER2_type 2343 2487 0 240 271 35 12 chr6 53794857 53794933 -135484621 + HsTC2c DNA Tc2 621 698 -31 1476 74 0 0 chr6 53795442 53795617 -135483937 - AluSq SINE Alu -7 306 132 2595 162 92 60 chr6 53795936 53796563 -135482991 - MER51A LTR ERV1 0 640 1 2373 65 3 45 chr6 53796726 53797036 -135482518 - AluY SINE Alu -14 297 1 1508 167 4 8 chr6 53797075 53797332 -135482222 + AluSx SINE Alu 55 310 -2 275 151 0 0 chr6 53797432 53797485 -135482069 + Alu SINE Alu 250 302 0 2323 98 0 37 chr6 53797499 53797824 -135481730 + AluSp SINE Alu 1 313 0 571 263 34 6 chr6 53799707 53799882 -135479672 - L1MC/D LINE L1 -2029 5779 5600 251 264 69 0 chr6 53800432 53800504 -135479050 + MIR SINE MIR 106 182 -80 2296 102 7 0 chr6 53800782 53801077 -135478477 - AluSx SINE Alu -15 297 1 27 29 0 0 chr6 53801473 53801507 -135478047 + AT_rich Low_complexity Low_complexity 1 34 0 1896 143 48 10 chr6 53801650 53801943 -135477611 - AluJb SINE Alu -8 304 1 243 331 80 17 chr6 53801944 53802119 -135477435 - L2 LINE L2 -13 3300 3115 551 156 0 0 chr6 53802210 53802300 -135477254 + AluS SINE Alu 2 91 -221 838 112 280 7 chr6 53802315 53802458 -135477096 - AluSp SINE Alu -19 294 113 252 123 281 0 chr6 53802462 53802519 -135477035 + 7SLRNA srpRNA srpRNA 237 309 -11 2417 95 0 0 chr6 53802523 53802819 -135476735 + AluY SINE Alu 1 296 -15 2327 72 62 0 chr6 53803374 53803666 -135475888 + AluSp SINE Alu 3 312 -1 2561 78 0 0 chr6 53803692 53804000 -135475554 + AluY SINE Alu 1 308 -3 265 323 60 18 chr6 53804163 53804330 -135475224 + L1MC/D LINE L1 3690 3863 -2283 1097 64 0 0 chr6 53804335 53804460 -135475094 + AluSx SINE Alu 1 125 -187 2321 111 0 0 chr6 53804564 53804861 -135474693 + AluSx SINE Alu 1 297 -15 969 184 0 49 chr6 53804861 53805046 -135474508 + AluSx SINE Alu 134 309 -3 327 188 72 7 chr6 53805258 53805375 -135474179 + FRAM/FAM SINE Alu 10 63 -112 397 367 28 14 chr6 53805400 53805615 -135473939 + L1MC/D LINE L1 4207 4424 -1722 198 0 0 0 chr6 53805878 53805900 -135473654 + (TG)n Simple_repeat Simple_repeat 2 23 0 394 246 68 8 chr6 53806404 53806522 -135473032 + L2 LINE L2 3179 3303 -10 420 321 131 44 chr6 53806743 53806823 -135472731 + L1MC/D LINE L1 5356 5428 -693 1752 153 0 64 chr6 53806823 53807149 -135472405 - AluSx SINE Alu -7 305 1 420 321 131 44 chr6 53807149 53807230 -135472324 + L1MC/D LINE L1 5428 5501 -620 2421 86 3 0 chr6 53807230 53807532 -135472022 - AluY SINE Alu -8 303 1 420 321 131 44 chr6 53807532 53807712 -135471842 + L1MC/D LINE L1 5500 5728 -393 271 358 0 0 chr6 53807718 53807883 -135471671 + L1MC/D LINE L1 5722 5886 -1922 1884 217 28 17 chr6 53807912 53808372 -135471182 + MLT1C LTR MaLR 1 465 -2 1644 159 70 40 chr6 53808719 53809020 -135470534 - AluJb SINE Alu -2 310 1 1609 110 148 4 chr6 53809073 53809337 -135470217 - AluSx SINE Alu 0 302 1 2281 98 0 3 chr6 53809348 53809643 -135469911 - AluSx SINE Alu -16 296 3 639 278 94 25 chr6 53809729 53809974 -135469580 + MIR SINE MIR 1 262 0 408 299 76 7 chr6 53809975 53810119 -135469435 + L2 LINE L2 3119 3272 0 236 310 116 31 chr6 53810240 53810369 -135469185 - L2 LINE L2 -17 3255 3116 2421 83 7 0 chr6 53810516 53810816 -135468738 - AluSq SINE Alu -11 302 1 2197 123 0 7 chr6 53810820 53811121 -135468433 - AluJb SINE Alu -11 301 3 1288 170 102 142 chr6 53811144 53811627 -135467927 - L1MC5 LINE L1 -618 7343 6889 701 201 0 15 chr6 53811627 53811761 -135467793 - FLAM_A SINE Alu -1 132 1 1288 170 102 142 chr6 53811761 53811905 -135467649 - L1MC5 LINE L1 -1072 6889 6741 350 263 92 57 chr6 53811937 53812118 -135467436 - L1MC5 LINE L1 -2222 5586 5413 2525 80 0 0 chr6 53812118 53812419 -135467135 - AluY SINE Alu -10 301 1 2045 134 20 3 chr6 53812419 53812711 -135466843 - AluSg SINE Alu -13 297 1 350 263 92 57 chr6 53812711 53812809 -135466745 - L1MC5 LINE L1 -2394 5414 5296 2138 113 17 7 chr6 53812829 53813131 -135466423 - AluSq SINE Alu -8 305 1 711 273 17 64 chr6 53813982 53814085 -135465469 - MIR SINE MIR -21 241 135 1930 132 3 60 chr6 53814085 53814403 -135465151 - AluJo SINE Alu -12 300 1 711 273 17 64 chr6 53814403 53814552 -135465002 - MIR SINE MIR -127 135 4 966 98 0 0 chr6 53814664 53814831 -135464723 - AluSx SINE Alu 0 324 158 243 242 0 0 chr6 53814904 53814966 -135464588 + CT-rich Low_complexity Low_complexity 1 62 0 1304 73 0 0 chr6 53814985 53815135 -135464419 - AluSx SINE Alu -162 150 1 191 321 18 0 chr6 53815136 53815192 -135464362 - MIR SINE MIR -65 143 87 1433 199 35 0 chr6 53815253 53815509 -135464045 - AluJo SINE Alu -15 297 33 2140 130 0 3 chr6 53815572 53815865 -135463689 + AluSx SINE Alu 2 293 -19 238 219 0 27 chr6 53816635 53816708 -135462846 + (TCTCTG)n Simple_repeat Simple_repeat 1 71 0 261 221 15 7 chr6 53816762 53816898 -135462656 + CT-rich Low_complexity Low_complexity 2 138 0 2077 93 0 22 chr6 53817215 53817493 -135462061 + AluSq SINE Alu 37 308 -5 29 60 0 0 chr6 53817694 53817744 -135461810 + AT_rich Low_complexity Low_complexity 1 50 0 2047 123 31 3 chr6 53818075 53818368 -135461186 + AluSx SINE Alu 1 301 -11 432 0 0 0 chr6 53819025 53819073 -135460481 + (TG)n Simple_repeat Simple_repeat 1 48 0 2135 117 0 29 chr6 53819228 53819544 -135460010 - AluSx SINE Alu -1 311 5 212 309 219 8 chr6 53819895 53820018 -135459536 + MIR SINE MIR 2 150 -112 2068 91 21 70 chr6 53820056 53820385 -135459169 + AluSq SINE Alu 1 313 0 814 202 21 11 chr6 53820536 53820675 -135458879 + MER3 DNA MER1_type 20 166 -43 2306 82 4 0 chr6 53820675 53820977 -135458577 + AluSx SINE Alu 1 303 0 814 202 21 11 chr6 53820977 53821022 -135458532 + MER3 DNA MER1_type 166 209 0 257 158 18 35 chr6 53820980 53821037 -135458517 - MER3 DNA MER1_type -119 90 35 * 360 0 0 0 chr6 53821041 53821081 -135458473 + (TC)n Simple_repeat Simple_repeat 2 41 0 * 528 111 0 0 chr6 53821080 53821161 -135458393 + (TA)n Simple_repeat Simple_repeat 1 81 0 225 0 0 0 chr6 53821264 53821289 -135458265 + (TG)n Simple_repeat Simple_repeat 2 26 0 1941 131 47 0 chr6 53821293 53821567 -135457987 - AluJb SINE Alu -17 295 9 183 226 21 97 chr6 53822022 53822115 -135457439 + MIR SINE MIR 33 118 -90 241 254 0 0 chr6 53822626 53822681 -135456873 - MIR SINE MIR -65 143 89 226 211 137 32 chr6 53823262 53823357 -135456197 - MIR SINE MIR -66 142 38 497 125 161 9 chr6 53823565 53823677 -135455877 - FLAM_A SINE Alu -1 141 13 1857 174 0 10 chr6 53824372 53824671 -135454883 + AluJb SINE Alu 1 296 -16 2353 103 3 0 chr6 53825121 53825421 -135454133 - AluSx SINE Alu -11 301 1 881 86 0 0 chr6 53825664 53825769 -135453785 - AluSg SINE Alu -205 105 1 1876 148 32 0 chr6 53826917 53827195 -135452359 + AluJb SINE Alu 1 287 -25 2400 91 3 3 chr6 53827406 53827714 -135451840 + AluSp SINE Alu 2 309 -4 302 279 179 25 chr6 53828201 53828403 -135451151 - MIR SINE MIR 0 262 15 2210 117 0 13 chr6 53828552 53828851 -135450703 + AluSx SINE Alu 1 295 -17 316 319 53 0 chr6 53829138 53829251 -135450303 + MIR SINE MIR 20 138 -70 2637 44 0 0 chr6 53830162 53830458 -135449096 + AluY SINE Alu 1 296 -15 2233 111 29 13 chr6 53831017 53831324 -135448230 + AluSq SINE Alu 1 312 -1 255 236 69 97 chr6 53832514 53832658 -135446896 + MIR3 SINE MIR 9 148 -60 352 220 17 196 chr6 53833235 53833408 -135446146 + MER91B DNA MER1_type 47 188 -2 441 0 0 0 chr6 53833544 53833593 -135445961 + (CA)n Simple_repeat Simple_repeat 1 49 0 2637 97 5 30 chr6 53833894 53834267 -135445287 - THE1B LTR MaLR 0 364 1 408 294 67 28 chr6 53835446 53835626 -135443928 + MIR SINE MIR 20 206 -56 302 158 195 12 chr6 53835669 53835751 -135443803 + L1ME4a LINE L1 6025 6121 0 2198 104 0 0 chr6 53835807 53836105 -135443449 + AluSg SINE Alu 1 298 -12 2002 144 0 0 chr6 53836554 53836853 -135442701 - AluSx SINE Alu -13 299 1 1589 185 10 17 chr6 53836879 53837014 -135442540 + AluJo SINE Alu 1 135 -177 2363 87 0 0 chr6 53837014 53837314 -135442240 + AluSg SINE Alu 1 300 -10 1589 185 10 17 chr6 53837314 53837470 -135442084 + AluJo SINE Alu 135 290 -22 443 266 16 16 chr6 53837506 53837630 -135441924 + MER5A DNA MER1_type 61 184 -5 745 278 152 22 chr6 53837808 53838271 -135441283 - L2 LINE L2 0 3313 2773 274 163 0 0 chr6 53838277 53838320 -135441234 - MLT1H LTR MaLR -5 585 543 870 50 0 0 chr6 53838320 53838421 -135441133 + AluSq/x SINE Alu 34 134 -178 1944 75 121 4 chr6 53838421 53838686 -135440868 + AluSg SINE Alu 1 296 -4 1059 165 0 0 chr6 53838704 53838868 -135440686 + FRAM SINE Alu 2 165 -1 706 240 162 85 chr6 53838871 53839243 -135440311 - MLT1H LTR MaLR -43 506 89 1611 189 3 10 chr6 53839243 53839539 -135440015 + AluJb SINE Alu 10 303 -9 706 240 162 85 chr6 53839539 53839636 -135439918 - MLT1H LTR MaLR -460 89 1 371 273 124 25 chr6 53839644 53839805 -135439749 - L2 LINE L2 -555 2759 2583 771 255 168 13 chr6 53839940 53840320 -135439234 - L2 LINE L2 -747 2567 2129 2196 109 0 6 chr6 53840433 53840746 -135438808 - AluSx SINE Alu -1 311 1 678 146 46 23 chr6 53840818 53840948 -135438606 - FLAM_C SINE Alu 0 133 1 1656 156 59 17 chr6 53841033 53841322 -135438232 + AluJo SINE Alu 1 301 -11 2017 149 0 0 chr6 53842469 53842771 -135436783 + AluSx SINE Alu 1 302 -10 2084 99 0 23 chr6 53842804 53843107 -135436447 + AluSc SINE Alu 1 296 -13 1160 129 0 0 chr6 53843243 53843406 -135436148 + AluJo SINE Alu 1 163 -149 43 0 0 0 chr6 53843448 53843491 -135436063 + AT_rich Low_complexity Low_complexity 1 43 0 729 269 54 67 chr6 53843501 53843887 -135435667 - L1ME4a LINE L1 -222 5899 5519 260 177 16 0 chr6 53847427 53847489 -135432065 + MER113 DNA MER1_type? 45 107 -414 204 306 0 0 chr6 53847646 53847695 -135431859 - MIR3 SINE MIR -51 157 109 957 128 0 0 chr6 53848683 53848816 -135430738 + FLAM_C SINE Alu 1 133 0 626 283 45 0 chr6 53849400 53849577 -135429977 - MIR SINE MIR -9 253 69 221 313 0 0 chr6 53850347 53850414 -135429140 - MIR3 SINE MIR -49 159 93 1577 138 8 8 chr6 53850647 53850893 -135428661 + AluJo SINE Alu 40 285 -27 293 349 0 60 chr6 53851394 53851416 -135428138 + MER5A DNA MER1_type 39 61 -128 2349 78 0 3 chr6 53851416 53851723 -135427831 + AluSg SINE Alu 1 306 -4 2039 133 0 0 chr6 53851727 53852027 -135427527 + AluSq SINE Alu 1 300 -13 293 349 0 60 chr6 53852027 53852148 -135427406 + MER5A DNA MER1_type 64 189 0 634 199 15 38 chr6 53852213 53852344 -135427210 + FLAM_A SINE Alu 5 132 -1 347 105 0 18 chr6 53852452 53852509 -135427045 - FLAM SINE Alu -2 131 76 2033 106 0 63 chr6 53853427 53853758 -135425796 - AluSg SINE Alu 0 310 1 2331 57 0 7 chr6 53853846 53854145 -135425409 - AluY SINE Alu -10 301 5 330 56 0 37 chr6 53854166 53854220 -135425334 - AluSc SINE Alu 0 299 248 431 216 23 0 chr6 53854327 53854415 -135425139 + AluSg/x SINE Alu 190 279 -31 528 213 0 39 chr6 53854509 53854616 -135424938 + MER3 DNA MER1_type 26 136 -26 557 14 14 0 chr6 53854616 53854686 -135424868 + (TTATG)n Simple_repeat Simple_repeat 5 75 0 2118 112 0 0 chr6 53854687 53854974 -135424580 - AluSx SINE Alu -23 289 3 528 213 0 39 chr6 53854974 53854991 -135424563 + MER3 DNA MER1_type 135 147 -62 2109 88 0 11 chr6 53854995 53855303 -135424251 - AluY SINE Alu 0 305 1 1711 164 0 4 chr6 53855307 53855581 -135423973 - AluJo SINE Alu -19 293 21 434 144 8 119 chr6 53855587 53855645 -135423909 + MER3 DNA MER1_type 105 145 -64 1572 151 46 14 chr6 53855645 53855775 -135423779 + AluJb SINE Alu 1 125 -187 1858 122 14 0 chr6 53855775 53856081 -135423473 + AluSx SINE Alu 1 310 0 1572 151 46 14 chr6 53856081 53856234 -135423320 + AluJb SINE Alu 125 294 -18 434 144 8 119 chr6 53856234 53856293 -135423261 + MER3 DNA MER1_type 145 209 0 347 127 0 0 chr6 53856250 53856305 -135423249 - MER3 DNA MER1_type -119 90 36 * 500 243 144 11 chr6 53856313 53856494 -135423060 + MER112 DNA MER1_type 12 216 -44 757 167 0 0 chr6 53857081 53857195 -135422359 - FLAM_A SINE Alu -11 131 18 2024 91 14 27 chr6 53857252 53857549 -135422005 + AluSg SINE Alu 1 293 -17 422 268 159 53 chr6 53857658 53857837 -135421717 + L1ME3A LINE L1 5564 5723 -447 2215 125 0 0 chr6 53857837 53858148 -135421406 + AluSx SINE Alu 1 311 -1 422 268 159 53 chr6 53858148 53858215 -135421339 + L1ME3A LINE L1 5723 5781 -389 1585 160 3 27 chr6 53858215 53858509 -135421045 + AluJo SINE Alu 6 292 -20 1957 119 10 7 chr6 53858509 53858812 -135420742 + AluSg SINE Alu 1 304 -6 422 268 159 53 chr6 53858812 53858940 -135420614 + L1ME3A LINE L1 5780 5980 -190 180 200 0 0 chr6 53859175 53859215 -135420339 + (CA)n Simple_repeat Simple_repeat 2 41 0 351 0 0 0 chr6 53859217 53859256 -135420298 + (TA)n Simple_repeat Simple_repeat 1 39 0 880 147 23 0 chr6 53859270 53859399 -135420155 - FLAM_C SINE Alu 0 133 2 698 203 0 16 chr6 53859492 53859620 -135419934 + AluJo SINE Alu 4 129 -183 1772 103 4 0 chr6 53859628 53859870 -135419684 - AluSp SINE Alu -24 289 47 22 0 0 0 chr6 53859875 53859897 -135419657 + AT_rich Low_complexity Low_complexity 1 22 0 2396 67 0 3 chr6 53859907 53860207 -135419347 + AluY SINE Alu 1 299 -12 987 154 0 19 chr6 53860210 53860372 -135419182 + AluJo SINE Alu 136 294 -18 477 278 48 0 chr6 53860455 53860581 -135418973 - MIR SINE MIR -14 248 117 2107 94 0 13 chr6 53862010 53862308 -135417246 - AluSg SINE Alu -16 294 1 241 80 20 20 chr6 53863519 53863569 -135415985 + (TTTTTG)n Simple_repeat Simple_repeat 2 51 0 2235 97 7 3 chr6 53863687 53863996 -135415558 + AluSx SINE Alu 1 310 -2 1910 168 0 0 chr6 53864476 53864774 -135414780 + AluJo SINE Alu 1 298 -14 2066 123 3 3 chr6 53864780 53865080 -135414474 + AluSg SINE Alu 1 300 -10 1459 135 31 135 chr6 53865085 53865204 -135414350 + AluSc SINE Alu 4 134 -165 2336 81 10 0 chr6 53865204 53865511 -135414043 + AluY SINE Alu 1 310 -1 1459 135 31 135 chr6 53865511 53865718 -135413836 + AluSc SINE Alu 134 296 -3 783 158 144 7 chr6 53865721 53865867 -135413687 + FRAM SINE Alu 1 166 0 590 264 84 6 chr6 53865868 53866046 -135413508 - MIR SINE MIR 0 262 71 310 292 130 63 chr6 53866299 53866528 -135413026 - MLT1I LTR MaLR -21 388 176 930 141 26 32 chr6 53866528 53866684 -135412870 + FAM SINE Alu 5 159 -16 234 62 0 0 chr6 53866684 53866716 -135412838 + (CA)n Simple_repeat Simple_repeat 2 33 0 310 292 130 63 chr6 53866716 53866769 -135412785 - MLT1I LTR MaLR -232 177 86 300 226 0 0 chr6 53866871 53866933 -135412621 - MER112 DNA MER1_type -198 62 1 2278 69 10 0 chr6 53867052 53867342 -135412212 - AluY SINE Alu -14 297 5 2416 72 0 0 chr6 53867414 53867718 -135411836 - AluY SINE Alu -7 304 1 1870 161 23 0 chr6 53867787 53868091 -135411463 - AluJb SINE Alu -1 311 1 1886 129 0 11 chr6 53868106 53868422 -135411132 - AluSx SINE Alu 0 313 1 317 324 36 22 chr6 53868449 53868588 -135410966 - L1ME4a LINE L1 -13 6108 5968 1273 196 40 34 chr6 53868735 53868893 -135410661 - AluJo SINE Alu -14 298 136 1970 139 0 3 chr6 53868893 53869188 -135410366 - AluSx SINE Alu -15 297 4 1273 196 40 34 chr6 53869188 53869325 -135410229 - AluJo SINE Alu -176 136 1 497 270 70 60 chr6 53869562 53869732 -135409822 - MER102b DNA MER1_type -1113 315 141 2025 131 0 3 chr6 53869732 53870030 -135409524 - AluSx SINE Alu -15 297 1 497 270 70 60 chr6 53870030 53870074 -135409480 - MER102b DNA MER1_type -1287 141 99 899 104 0 37 chr6 53870667 53870801 -135408753 + FLAM_C SINE Alu 1 129 -14 334 234 13 0 chr6 53870872 53870949 -135408605 + MER112 DNA MER1_type 1 78 -182 330 183 28 0 chr6 53870949 53871020 -135408534 + MER116 DNA Mariner 7 79 -1 2162 98 0 16 chr6 53871355 53871662 -135407892 + AluSx SINE Alu 1 302 -10 288 73 0 0 chr6 53871877 53871904 -135407650 + (T)n Simple_repeat Simple_repeat 1 30 -11 1809 148 0 0 chr6 53871904 53872188 -135407366 + AluJb SINE Alu 2 285 -27 288 73 0 0 chr6 53872188 53872201 -135407353 + (T)n Simple_repeat Simple_repeat 29 41 0 21 0 0 0 chr6 53873286 53873307 -135406247 + GC_rich Low_complexity Low_complexity 1 21 0 252 326 0 0 chr6 53873412 53873501 -135406053 + (CGG)n Simple_repeat Simple_repeat 3 91 0 26 0 0 0 chr6 53873626 53873652 -135405902 + GC_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr6 53874067 53874097 -135405457 + GC_rich Low_complexity Low_complexity 1 30 0 499 298 6 39 chr6 53877035 53877213 -135402341 - MIR3 SINE MIR -2 206 35 787 257 50 17 chr6 53877291 53877532 -135402022 - MIR SINE MIR 0 262 14 322 253 66 0 chr6 53878757 53878848 -135400706 - MIR3 SINE MIR -27 181 85 608 227 127 0 chr6 53879017 53879119 -135400435 + MER5A DNA MER1_type 9 137 -52 2445 40 0 10 chr6 53879119 53879420 -135400134 - AluY SINE Alu -13 298 1 608 227 127 0 chr6 53879420 53879467 -135400087 + MER5A DNA MER1_type 137 177 -12 1730 78 0 0 chr6 53879567 53879785 -135399769 + AluY SINE Alu 81 298 -13 240 35 0 0 chr6 53880388 53880417 -135399137 + (CA)n Simple_repeat Simple_repeat 2 30 0 32 26 0 0 chr6 53881784 53881823 -135397731 + AT_rich Low_complexity Low_complexity 1 39 0 201 210 0 0 chr6 53883169 53883231 -135396323 + (TG)n Simple_repeat Simple_repeat 2 63 0 560 310 85 15 chr6 53884802 53885002 -135394552 - MIR SINE MIR 0 262 49 402 21 0 0 chr6 53885546 53885593 -135393961 + (TTCC)n Simple_repeat Simple_repeat 4 50 0 2328 109 7 0 chr6 53885602 53885904 -135393650 - AluSg SINE Alu -6 304 1 713 233 101 0 chr6 53886995 53887223 -135392331 - MER112 DNA MER1_type -4 256 6 459 321 11 27 chr6 53887514 53887698 -135391856 + MER5A DNA MER1_type 7 187 -2 757 278 43 13 chr6 53890721 53890955 -135388599 - MIR SINE MIR -2 260 20 2269 99 20 0 chr6 53891035 53891337 -135388217 - AluSc SINE Alu -1 308 1 2163 123 33 0 chr6 53891385 53891687 -135387867 - AluSx SINE Alu 0 312 1 522 267 164 39 chr6 53891992 53892314 -135387240 - L1ME LINE L1 -586 5535 5174 377 260 48 106 chr6 53892307 53892515 -135387039 - L1ME4a LINE L1 -4 6117 5922 * 310 285 57 39 chr6 53892812 53893093 -135386461 - L1ME LINE L1 -939 5207 4922 384 22 0 0 chr6 53893106 53893151 -135386403 + (TG)n Simple_repeat Simple_repeat 2 46 0 1386 162 0 70 chr6 53893154 53893425 -135386129 - AluJo SINE Alu 0 312 61 2272 109 0 0 chr6 53893452 53893736 -135385818 - AluSx SINE Alu -26 286 3 314 301 138 52 chr6 53893799 53893906 -135385648 - L1ME LINE L1 -1327 4819 4723 1763 166 51 3 chr6 53893906 53894201 -135385353 - AluJb SINE Alu -3 309 1 314 301 138 52 chr6 53894201 53894272 -135385282 - L1ME LINE L1 -1423 4723 4659 1726 151 4 18 chr6 53894272 53894550 -135385004 + AluSx SINE Alu 31 304 -8 314 301 138 52 chr6 53894550 53894639 -135384915 - L1ME LINE L1 -1487 4659 4528 850 148 0 0 chr6 53895259 53895387 -135384167 - FLAM_C SINE Alu -5 128 1 225 0 0 0 chr6 53895396 53895421 -135384133 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 917 118 67 0 chr6 53895421 53895556 -135383998 - AluSg/x SINE Alu -32 278 135 291 301 15 22 chr6 53895564 53895700 -135383854 - L2 LINE L2 -844 2470 2336 2322 106 0 6 chr6 53896124 53896472 -135383082 - AluSg SINE Alu 0 346 1 2318 94 3 0 chr6 53896627 53896915 -135382639 + AluSx SINE Alu 1 289 -23 274 273 250 14 chr6 53897303 53897519 -135382035 - L2 LINE L2 -1065 2249 1983 180 111 0 0 chr6 53897731 53897758 -135381796 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 248 299 115 25 chr6 53898810 53898904 -135380650 + L3b LINE CR1 1325 1409 -174 2282 105 3 0 chr6 53898904 53899199 -135380355 - AluSq SINE Alu -17 296 1 248 299 115 25 chr6 53899199 53899261 -135380293 + L3b LINE CR1 1409 1495 -88 2287 100 0 31 chr6 53899315 53899635 -135379919 - AluSg SINE Alu 0 310 1 1986 138 0 0 chr6 53899812 53900081 -135379473 + AluSx SINE Alu 1 269 -43 2486 93 3 0 chr6 53900777 53901089 -135378465 - AluSp SINE Alu 0 313 1 265 301 169 53 chr6 53902948 53903267 -135376287 - L2 LINE L2 0 3272 2917 2581 68 0 0 chr6 53903325 53903632 -135375922 - AluY SINE Alu -4 307 1 672 342 121 13 chr6 53903650 53904287 -135375267 - L2 LINE L2 -461 2853 2148 726 177 24 0 chr6 53904408 53904532 -135375022 - FLAM_C SINE Alu -4 129 3 2179 94 34 27 chr6 53907402 53907700 -135371854 + AluSq SINE Alu 1 300 -13 219 277 0 15 chr6 53908046 53908111 -135371443 + GA-rich Low_complexity Low_complexity 1 64 0 308 274 86 27 chr6 53908506 53908692 -135370862 - L1MEc LINE L1 -2989 3226 3030 1919 118 4 0 chr6 53908696 53908951 -135370603 - AluSx SINE Alu -10 302 47 1589 215 39 39 chr6 53908977 53909415 -135370139 - L1ME3 LINE L1 0 6162 5725 609 279 84 31 chr6 53909401 53909909 -135369645 - L1MEc LINE L1 -3171 3044 2491 * 827 204 60 20 chr6 53909909 53910048 -135369506 + MER3 DNA MER1_type 1 152 -57 2251 119 0 13 chr6 53910048 53910359 -135369195 - AluSx SINE Alu -5 307 1 827 204 60 20 chr6 53910359 53910420 -135369134 + MER3 DNA MER1_type 152 209 0 609 279 84 31 chr6 53910420 53910580 -135368974 - L1MEc LINE L1 -3724 2491 2341 288 169 15 0 chr6 53910622 53910687 -135368867 - L1MB3 LINE L1 0 6183 6118 1650 156 92 14 chr6 53910688 53910970 -135368584 - AluSg SINE Alu -6 304 1 2474 89 0 13 chr6 53910989 53911302 -135368252 - AluY SINE Alu -2 309 1 1086 244 22 84 chr6 53911302 53911491 -135368063 - L1MC4 LINE L1 -313 7729 7530 2228 131 0 7 chr6 53911491 53911797 -135367757 - AluSg SINE Alu -4 306 3 1086 244 22 84 chr6 53911797 53911820 -135367734 - L1MC4 LINE L1 -512 7530 7507 2311 104 3 3 chr6 53911820 53912129 -135367425 - AluSg SINE Alu -1 309 1 1086 244 22 84 chr6 53912129 53912416 -135367138 - L1MC4 LINE L1 -535 7507 7260 399 323 117 32 chr6 53912443 53913019 -135366535 - L1MEc LINE L1 -3862 2415 1874 2337 103 0 0 chr6 53913129 53913430 -135366124 + AluSx SINE Alu 1 301 -11 310 178 297 30 chr6 53913527 53913628 -135365926 - L1MC5 LINE L1 -51 7910 7783 1667 209 55 139 chr6 53913632 53914649 -135364905 - L1MC5 LINE L1 -244 7717 6786 523 197 40 121 chr6 53915930 53915991 -135363563 - MIR SINE MIR -19 243 179 2097 137 10 0 chr6 53915991 53916283 -135363271 + AluSx SINE Alu 1 295 -17 523 197 40 121 chr6 53916283 53916372 -135363182 - MIR SINE MIR -83 179 110 2174 124 17 0 chr6 53916372 53916670 -135362884 + AluSx SINE Alu 1 303 -9 523 197 40 121 chr6 53916670 53916716 -135362838 - MIR SINE MIR -152 110 62 682 161 0 0 chr6 53916727 53916839 -135362715 + FRAM SINE Alu 44 155 -21 189 167 48 0 chr6 53916849 53916891 -135362663 - MIR SINE MIR -184 78 35 188 217 17 67 chr6 53917611 53917671 -135361883 - MER5A DNA MER1_type -120 69 13 191 312 21 32 chr6 53918426 53918519 -135361035 + MIR SINE MIR 48 139 -69 529 254 41 6 chr6 53918577 53918746 -135360808 + MER5B DNA MER1_type 1 175 -3 1821 150 0 4 chr6 53918944 53919211 -135360343 + AluJb SINE Alu 18 283 -29 633 209 70 13 chr6 53919717 53919875 -135359679 - MIR SINE MIR -10 252 86 436 162 0 0 chr6 53919894 53919962 -135359592 - AluJ/FLAM SINE Alu -243 69 2 778 252 174 71 chr6 53919969 53920058 -135359496 - L2 LINE L2 -536 2778 2700 2506 84 0 0 chr6 53920058 53920369 -135359185 - AluY SINE Alu 0 311 1 778 252 174 71 chr6 53920369 53920756 -135358798 - L2 LINE L2 -614 2700 2253 1254 201 0 18 chr6 53920825 53921044 -135358510 + AluJo SINE Alu 70 284 -28 189 0 0 0 chr6 53921044 53921065 -135358489 + (GA)n Simple_repeat Simple_repeat 2 22 0 409 281 152 6 chr6 53923893 53924064 -135355490 + MIR SINE MIR 2 197 -65 220 333 0 0 chr6 53925006 53925069 -135354485 + L2 LINE L2 3251 3313 0 196 222 191 56 chr6 53925354 53925480 -135354074 + MIR3 SINE MIR 16 158 -50 2298 105 3 0 chr6 53926709 53927004 -135352550 - AluSq SINE Alu -17 296 1 2571 60 0 0 chr6 53927018 53927320 -135352234 - AluY SINE Alu -9 302 1 190 200 0 0 chr6 53928640 53928675 -135350879 + MER5A DNA MER1_type 40 74 -115 2435 100 0 0 chr6 53928678 53928977 -135350577 + AluSx SINE Alu 1 299 -13 2245 108 0 0 chr6 53928988 53929283 -135350271 + AluSg SINE Alu 1 295 -15 188 200 0 50 chr6 53929315 53929355 -135350199 - MER5A DNA MER1_type -114 75 38 562 201 110 7 chr6 53929381 53929535 -135350019 + MER69A DNA AcHobo 8 177 0 1808 189 6 10 chr6 53929661 53929974 -135349580 + AluSx SINE Alu 1 312 0 1554 144 42 25 chr6 53930033 53930317 -135349237 + AluJo SINE Alu 7 295 -17 2300 80 0 0 chr6 53930405 53930704 -135348850 + AluSx SINE Alu 9 307 0 1785 257 92 14 chr6 53931474 53931787 -135347767 + L2 LINE L2 2297 2584 -729 3373 166 57 29 chr6 53931787 53932430 -135347124 - LTR62 LTR ERVK -2 717 49 1414 164 34 74 chr6 53932430 53932630 -135346924 - AluJo SINE Alu 0 311 126 2361 82 0 7 chr6 53932630 53932924 -135346630 + AluSc SINE Alu 1 292 -17 1414 164 34 74 chr6 53932924 53933044 -135346510 - AluJo SINE Alu -185 126 3 3373 166 57 29 chr6 53933044 53933095 -135346459 - LTR62 LTR ERVK -670 49 1 1785 257 92 14 chr6 53933095 53933593 -135345961 + L2 LINE L2 2584 3179 -134 671 96 60 24 chr6 53933627 53933794 -135345760 + CT-rich Low_complexity Low_complexity 1 173 0 1971 157 26 7 chr6 53933796 53934175 -135345379 - AluJo SINE Alu 0 385 1 341 243 0 0 chr6 53934175 53934245 -135345309 + L2 LINE L2 3244 3313 0 183 100 0 0 chr6 53934847 53934877 -135344677 + (CA)n Simple_repeat Simple_repeat 2 31 0 1947 113 4 4 chr6 53934894 53935170 -135344384 - AluSp SINE Alu -5 308 35 1565 109 5 0 chr6 53935559 53935770 -135343784 - AluSg/x SINE Alu 0 310 99 298 140 0 20 chr6 53935770 53935811 -135343743 - AluSp SINE Alu -258 42 1 319 315 63 7 chr6 53935821 53935964 -135343590 + MIR SINE MIR 57 207 -55 732 123 200 13 chr6 53935970 53936125 -135343429 + AluSq SINE Alu 126 309 -4 2418 39 0 0 chr6 53936125 53936434 -135343120 + AluY SINE Alu 1 309 0 180 0 0 0 chr6 53936434 53936454 -135343100 + (CA)n Simple_repeat Simple_repeat 1 20 0 2302 101 9 0 chr6 53936458 53936774 -135342780 + L1MC1 LINE L1 6015 6333 0 535 210 48 57 chr6 53936829 53937027 -135342527 + L1ME1 LINE L1 5847 6045 -121 1067 120 34 46 chr6 53937029 53937204 -135342350 - AluJb SINE Alu -13 299 127 495 159 35 9 chr6 53937217 53937330 -135342224 - L1MB1 LINE L1 -208 5960 5845 934 152 7 7 chr6 53937362 53937513 -135342041 + AluJo SINE Alu 1 151 -161 342 0 0 0 chr6 53937518 53937556 -135341998 + (TG)n Simple_repeat Simple_repeat 2 39 0 315 111 0 0 chr6 53937556 53937610 -135341944 + L1M3 LINE L1 5791 5844 -490 1368 221 131 37 chr6 53937631 53937822 -135341732 - L1MC5 LINE L1 -58 7903 7731 825 147 0 29 chr6 53937822 53937958 -135341596 + FLAM_C SINE Alu 1 132 -1 1368 221 131 37 chr6 53937958 53938422 -135341132 - L1MC5 LINE L1 -230 7731 7186 314 292 66 36 chr6 53938511 53938648 -135340906 - L1ME3 LINE L1 -61 6101 5961 2590 39 0 3 chr6 53938681 53938988 -135340566 - AluY SINE Alu -5 306 1 1703 143 12 81 chr6 53939057 53939392 -135340162 - AluJb SINE Alu 0 312 1 3253 233 66 82 chr6 53939688 53940389 -135339165 + L1MEc LINE L1 40 751 -5645 1653 186 0 29 chr6 53940389 53940700 -135338854 - AluJo SINE Alu -10 302 1 3253 233 66 82 chr6 53940700 53941344 -135338210 + L1MEc LINE L1 751 1404 -4992 3402 195 32 96 chr6 53941344 53942379 -135337175 - LTR5 LTR ERVK 0 969 1 3253 233 66 82 chr6 53942379 53942474 -135337080 + L1MEc LINE L1 1404 1458 -4938 1968 132 0 11 chr6 53942474 53942790 -135336764 + AluSx SINE Alu 1 313 0 3253 233 66 82 chr6 53942790 53942915 -135336639 + L1MEc LINE L1 1458 1583 -4813 281 254 34 128 chr6 53942917 53943001 -135336553 + L2 LINE L2 2675 2765 -507 1430 308 47 2 chr6 53943001 53943429 -135336125 - LTR16A LTR ERVL -3 447 1 281 254 34 128 chr6 53943429 53943684 -135335870 + L2 LINE L2 2765 3082 -190 952 213 47 43 chr6 53943686 53943919 -135335635 + MIR SINE MIR 8 245 -17 1834 171 0 0 chr6 53943919 53944227 -135335327 - AluJb SINE Alu 0 308 1 952 213 47 43 chr6 53944227 53944246 -135335308 + MIR SINE MIR 245 262 0 1870 176 0 3 chr6 53944297 53944610 -135334944 + AluJb SINE Alu 1 312 0 232 207 24 12 chr6 53945467 53945549 -135334005 + (CCG)n Simple_repeat Simple_repeat 3 85 0 218 79 0 26 chr6 53945561 53945599 -135333955 + (CGGGG)n Simple_repeat Simple_repeat 1 37 0 281 241 11 11 chr6 53947297 53947384 -135332170 + (CA)n Simple_repeat Simple_repeat 2 88 0 225 219 0 0 chr6 53947404 53947477 -135332077 + (CA)n Simple_repeat Simple_repeat 2 74 0 238 364 49 42 chr6 53947482 53947625 -135331929 - L3b LINE CR1 -154 1429 1286 202 217 0 22 chr6 53949496 53949542 -135330012 + (CGTG)n Simple_repeat Simple_repeat 4 48 0 2050 141 0 0 chr6 53950294 53950592 -135328962 + AluSx SINE Alu 1 298 -14 502 146 124 0 chr6 53950599 53950688 -135328866 + FLAM_A SINE Alu 35 134 -8 412 278 80 37 chr6 53950744 53950931 -135328623 - MIR SINE MIR 0 262 68 1450 117 0 0 chr6 53950940 53951145 -135328409 + AluSq SINE Alu 101 305 -8 383 302 47 0 chr6 53951196 53951345 -135328209 - MER46C DNA MER2_type -178 160 5 367 343 29 0 chr6 53951349 53951486 -135328068 - L1ME LINE L1 -403 5718 5578 487 156 22 36 chr6 53951583 53951621 -135327933 + L1MA4A LINE L1 6001 6038 -265 2025 145 0 0 chr6 53951621 53951932 -135327622 + AluSx SINE Alu 1 311 -1 487 156 22 36 chr6 53951932 53952115 -135327439 + L1MA4A LINE L1 6038 6280 -23 210 288 136 17 chr6 53952189 53952307 -135327247 + MIR3 SINE MIR 5 136 -72 2092 136 0 0 chr6 53952828 53953129 -135326425 + AluSx SINE Alu 6 306 -6 279 238 221 25 chr6 53953153 53953293 -135326261 - MIR SINE MIR -63 145 20 323 102 0 0 chr6 53954973 53955022 -135324532 + LTR23 LTR ERV1 316 364 -73 237 108 0 0 chr6 53957293 53957330 -135322224 + (CA)n Simple_repeat Simple_repeat 2 38 0 2130 119 20 0 chr6 53957899 53958201 -135321353 + AluSx SINE Alu 1 308 -4 208 197 49 16 chr6 53958256 53958317 -135321237 - L2 LINE L2 -87 3185 3123 246 62 0 0 chr6 53958925 53958957 -135320597 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 249 292 22 66 chr6 53959882 53960019 -135319535 - L2 LINE L2 -220 3052 2922 327 335 208 30 chr6 53960050 53960472 -135319082 - L2 LINE L2 -465 2849 2504 2070 101 0 4 chr6 53960472 53960777 -135318777 + AluSx SINE Alu 7 310 0 327 335 208 30 chr6 53960777 53961087 -135318467 - L2 LINE L2 -810 2504 1985 245 341 147 8 chr6 53962001 53962130 -135317424 - L2 LINE L2 -1 3271 3125 * 330 304 20 0 chr6 53962125 53962227 -135317327 + MIR SINE MIR 19 122 -86 594 254 70 25 chr6 53962761 53962962 -135316592 - MIR SINE MIR -40 222 13 2303 70 13 10 chr6 53962980 53963282 -135316272 - AluSp SINE Alu -10 303 1 492 18 0 0 chr6 53963362 53963419 -135316135 + (TG)n Simple_repeat Simple_repeat 2 58 0 348 259 81 97 chr6 53964224 53964483 -135315071 - L2 LINE L2 -31 3241 2987 1018 238 9 0 chr6 53965266 53965476 -135314078 - MIR SINE MIR -21 241 30 396 0 0 0 chr6 53966781 53966825 -135312729 + (TG)n Simple_repeat Simple_repeat 2 45 0 413 289 39 0 chr6 53967683 53967787 -135311767 - MER91C DNA MER1_type -1 139 32 297 0 0 0 chr6 53968128 53968161 -135311393 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 506 211 18 0 chr6 53969396 53969505 -135310049 - MIR SINE MIR -21 241 131 324 248 70 8 chr6 53970102 53970231 -135309323 - Charlie8 DNA MER1_type -2280 137 1 272 212 30 53 chr6 53971611 53971743 -135307811 + (CCCCG)n Simple_repeat Simple_repeat 4 132 0 21 0 0 0 chr6 53971800 53971821 -135307733 + GC_rich Low_complexity Low_complexity 1 21 0 201 121 0 0 chr6 53972629 53972662 -135306892 + (CA)n Simple_repeat Simple_repeat 1 33 0 21 57 0 0 chr6 53972882 53972917 -135306637 + GC_rich Low_complexity Low_complexity 1 35 0 403 260 84 26 chr6 53974799 53974953 -135304601 + MER5B DNA MER1_type 14 176 -2 295 182 73 0 chr6 53975988 53976043 -135303511 + L2 LINE L2 3214 3272 0 1122 118 140 0 chr6 53976125 53976329 -135303225 - AluJb SINE Alu 0 314 86 198 349 34 74 chr6 53977245 53977458 -135302096 - L2 LINE L2 -339 2975 2780 2310 82 0 7 chr6 53977458 53977762 -135301792 + AluSx SINE Alu 1 302 -10 198 349 34 74 chr6 53977762 53977898 -135301656 - L2 LINE L2 -534 2780 2640 267 280 19 37 chr6 53978633 53978740 -135300814 + MIR3 SINE MIR 95 199 -9 557 241 0 45 chr6 53978860 53978993 -135300561 - L2 LINE L2 -3 3310 3184 741 125 0 0 chr6 53979301 53979421 -135300133 + (GGA)n Simple_repeat Simple_repeat 3 122 0 36 40 0 0 chr6 53981571 53981621 -135297933 + GC_rich Low_complexity Low_complexity 1 50 0 511 368 21 0 chr6 53982615 53982808 -135296746 - L3b LINE CR1 -140 1443 1247 210 288 136 17 chr6 53984748 53984866 -135294688 - MIR3 SINE MIR -72 136 5 487 156 22 36 chr6 53984940 53985123 -135294431 - L1MA4A LINE L1 -23 6280 6038 2025 145 0 0 chr6 53985123 53985434 -135294120 - AluSx SINE Alu -1 311 1 487 156 22 36 chr6 53985434 53985472 -135294082 - L1MA4A LINE L1 -265 6038 6001 367 343 29 0 chr6 53985569 53985706 -135293848 + L1ME LINE L1 5578 5718 -403 625 263 78 35 chr6 53985710 53985910 -135293644 + MER46C DNA MER2_type 5 220 -118 2388 102 0 0 chr6 53985910 53986215 -135293339 - AluSq SINE Alu -8 305 1 625 263 78 35 chr6 53986215 53986269 -135293285 + MER46C DNA MER2_type 220 270 -68 225 0 0 0 chr6 53986271 53986296 -135293258 + (TG)n Simple_repeat Simple_repeat 2 26 0 377 304 0 11 chr6 53986297 53986406 -135293148 - L1MC4 LINE L1 -1339 6703 6614 * 384 284 23 0 chr6 53986327 53986415 -135293139 + L1MC4 LINE L1 6614 6703 -1339 2611 102 55 14 chr6 53986415 53986836 -135292718 - Tigger2 DNA MER2_type -1 2717 2280 407 164 0 0 chr6 53986834 53986901 -135292653 - Tigger2 DNA MER2_type -2649 69 3 * 631 198 25 8 chr6 53987081 53987202 -135292352 + FLAM_A SINE Alu 1 123 -10 22 35 0 0 chr6 53987867 53987896 -135291658 + AT_rich Low_complexity Low_complexity 1 29 0 672 104 0 96 chr6 53987930 53988045 -135291509 - AluJb SINE Alu -19 293 190 1953 153 33 12 chr6 53988047 53988446 -135291108 - L1MB7 LINE L1 -256 5928 5522 322 230 30 10 chr6 53988454 53988554 -135291000 - L1ME LINE L1 -302 5819 5718 1198 141 0 0 chr6 53988900 53989063 -135290491 + FRAM SINE Alu 1 163 -13 284 300 62 58 chr6 53989115 53989355 -135290199 - L2 LINE L2 -184 3088 2848 286 246 33 0 chr6 53990171 53990232 -135289322 - L2 LINE L2 -54 3259 3197 721 172 20 18 chr6 53990232 53990905 -135288649 + (CACCAT)n Simple_repeat Simple_repeat 1 674 0 727 164 23 11 chr6 53990919 53991096 -135288458 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 608 215 32 23 chr6 53991117 53991464 -135288090 + (CACCAT)n Simple_repeat Simple_repeat 1 350 0 1409 109 5 30 chr6 53991765 53991967 -135287587 - AluSg/x SINE Alu 0 312 116 497 200 113 31 chr6 53992072 53992232 -135287322 - MIR3 SINE MIR -2 206 34 1148 104 78 69 chr6 53992387 53992524 -135287030 + ORSL DNA AcHobo 42 183 -92 2315 121 0 0 chr6 53992524 53992830 -135286724 - AluSx SINE Alu -6 306 1 1148 104 78 69 chr6 53992830 53992923 -135286631 + ORSL DNA AcHobo 183 274 -1 447 250 19 123 chr6 53993243 53993297 -135286257 + MIR SINE MIR 19 77 -185 2395 96 0 6 chr6 53993297 53993610 -135285944 - AluSq SINE Alu 0 313 3 447 250 19 123 chr6 53993610 53993767 -135285787 + MIR SINE MIR 77 208 -54 393 22 0 0 chr6 53995136 53995182 -135284372 + (TG)n Simple_repeat Simple_repeat 1 46 0 2207 103 17 3 chr6 53995297 53995588 -135283966 + AluSx SINE Alu 1 295 -17 248 294 0 0 chr6 53997072 53997140 -135282414 - MIR SINE MIR -115 147 80 357 273 40 0 chr6 53997228 53997327 -135282227 + MIR SINE MIR 63 165 -97 314 211 105 88 chr6 53998976 53999090 -135280464 - MIR SINE MIR -4 258 143 2062 115 4 0 chr6 53999095 53999373 -135280181 - AluSg SINE Alu -18 292 14 651 207 0 0 chr6 53999473 53999594 -135279960 + MLT1A1 LTR MaLR 245 365 0 478 100 0 25 chr6 53999595 53999675 -135279879 + L1M4c LINE L1 2407 2484 -3900 877 223 14 104 chr6 53999725 53999871 -135279683 + L1M4c LINE L1 2470 2627 -3755 1616 176 3 31 chr6 53999871 54000161 -135279393 + AluJo SINE Alu 1 282 -30 208 0 62 0 chr6 54000166 54000198 -135279356 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 877 223 14 104 chr6 54000198 54000354 -135279200 + L1M4c LINE L1 2631 2746 -3636 1236 225 58 15 chr6 54000354 54000679 -135278875 + MER2 DNA MER2_type 3 341 -3 877 223 14 104 chr6 54000679 54000715 -135278839 + L1M4c LINE L1 2746 2784 -3598 659 288 19 25 chr6 54000840 54000980 -135278574 - L1M4 LINE L1 -2966 3180 3041 2316 125 0 3 chr6 54000980 54001292 -135278262 - AluSx SINE Alu -1 311 1 659 288 19 25 chr6 54001292 54001470 -135278084 - L1M4 LINE L1 -3105 3041 2864 1655 163 7 21 chr6 54001507 54001789 -135277765 + AluJo SINE Alu 24 301 -11 282 277 30 0 chr6 54001789 54001890 -135277664 - L1M4 LINE L1 -3272 2874 2771 2741 142 68 60 chr6 54002017 54002515 -135277039 - L1MB5 LINE L1 -258 5916 5424 1767 179 7 3 chr6 54002515 54002811 -135276743 - AluJo SINE Alu -14 298 2 2741 142 68 60 chr6 54002811 54002842 -135276712 - L1MB5 LINE L1 -750 5424 5395 2121 135 0 0 chr6 54002842 54003138 -135276416 - AluSx SINE Alu -16 296 1 2741 142 68 60 chr6 54003138 54003280 -135276274 - L1MB5 LINE L1 -779 5395 5236 3910 203 71 22 chr6 54003384 54004078 -135275476 - L1MB5 LINE L1 -1199 4947 4187 1460 201 88 0 chr6 54004078 54004378 -135275176 - AluJo SINE Alu 0 312 5 3910 203 71 22 chr6 54004378 54004687 -135274867 - L1MB5 LINE L1 -1959 4187 3895 550 307 123 18 chr6 54005008 54005334 -135274220 - MLT1K LTR MaLR -128 460 101 241 192 192 0 chr6 54006547 54006620 -135272934 - MARNA DNA Mariner -21 565 479 2243 112 0 3 chr6 54006661 54006956 -135272598 + AluSg SINE Alu 1 294 -16 1515 177 78 11 chr6 54007352 54007634 -135271920 + AluJo SINE Alu 1 301 -11 489 252 44 37 chr6 54007787 54007922 -135271632 - L2 LINE L2 0 3272 3137 2084 121 14 4 chr6 54008016 54008320 -135271234 + AluSx SINE Alu 1 307 0 245 281 100 56 chr6 54008477 54008637 -135270917 - L2 LINE L2 -265 3007 2841 2363 92 0 7 chr6 54008898 54009203 -135270351 - AluSx SINE Alu -9 303 1 423 284 196 71 chr6 54009338 54009634 -135269920 - L3 LINE CR1 -4 1573 1241 305 289 48 0 chr6 54009697 54009780 -135269774 + L1M4 LINE L1 2405 2491 -3655 408 133 111 0 chr6 54010755 54010845 -135268709 + L1M1 LINE L1 5356 5455 -847 2222 106 3 10 chr6 54010958 54011270 -135268284 - AluSx SINE Alu -2 310 1 925 196 136 14 chr6 54011380 54011594 -135267960 - MIR SINE MIR -21 241 2 2214 87 0 0 chr6 54013412 54013678 -135265876 + AluSg SINE Alu 39 304 -6 375 232 80 17 chr6 54013689 54013821 -135265733 - MIR SINE MIR -60 148 30 512 232 27 78 chr6 54015601 54015826 -135263728 - MIR SINE MIR -50 212 3 2191 122 26 0 chr6 54017329 54017632 -135261922 - AluSq SINE Alu -2 311 1 899 116 0 77 chr6 54017792 54017947 -135261607 + FLAM_C SINE Alu 1 143 0 304 297 79 2 chr6 54018806 54018962 -135260592 - MIR SINE MIR -65 143 23 295 296 59 59 chr6 54019728 54019873 -135259681 + L2 LINE L2 2895 3042 -230 1896 156 19 23 chr6 54019873 54020181 -135259373 + AluJb SINE Alu 1 307 -5 295 296 59 59 chr6 54020181 54020221 -135259333 + L2 LINE L2 3041 3080 -192 448 299 6 0 chr6 54020504 54020668 -135258886 + CT-rich Low_complexity Low_complexity 1 165 0 218 268 9 80 chr6 54021882 54021994 -135257560 - MIR SINE MIR -61 147 81 364 273 78 24 chr6 54023408 54023572 -135255982 - MIR3 SINE MIR -49 159 32 207 182 0 0 chr6 54023821 54023854 -135255700 - L2 LINE L2 -85 3187 3155 381 304 38 46 chr6 54023869 54024132 -135255422 + L2 LINE L2 2628 2888 -426 21 36 0 0 chr6 54024304 54024332 -135255222 + AT_rich Low_complexity Low_complexity 1 28 0 1812 113 8 4 chr6 54024606 54024846 -135254708 + AluSq SINE Alu 1 241 -72 263 49 0 0 chr6 54024957 54024998 -135254556 + AluY SINE Alu 262 302 0 2319 102 3 0 chr6 54025008 54025313 -135254241 + AluSq SINE Alu 1 306 -7 2302 168 75 4 chr6 54025313 54025806 -135253748 + L1MB7 LINE L1 5598 6125 -59 822 239 0 17 chr6 54025806 54025982 -135253572 + AluJb SINE Alu 121 293 -19 2404 85 3 16 chr6 54027126 54027442 -135252112 + AluSx SINE Alu 1 312 0 2105 128 0 17 chr6 54027630 54027927 -135251627 + AluSx SINE Alu 1 292 -20 279 133 0 0 chr6 54027941 54027986 -135251568 + (T)n Simple_repeat Simple_repeat 1 45 0 1997 113 0 32 chr6 54028096 54028379 -135251175 - AluSq SINE Alu -39 274 1 2178 107 17 0 chr6 54028380 54028670 -135250884 - AluSx SINE Alu -17 295 1 1916 154 16 13 chr6 54028672 54028977 -135250577 - AluJb SINE Alu -6 306 1 2213 130 0 3 chr6 54028987 54029288 -135250266 - AluSx SINE Alu -12 300 1 302 267 16 96 chr6 54030757 54030944 -135248610 - L1ME4a LINE L1 -51 6070 5899 376 227 49 92 chr6 54031485 54031648 -135247906 - L2 LINE L2 0 3313 3158 323 144 19 19 chr6 54032021 54032125 -135247429 + (TA)n Simple_repeat Simple_repeat 1 104 0 229 289 103 31 chr6 54033560 54033657 -135245897 - MIR SINE MIR -139 123 20 21 82 0 0 chr6 54035098 54035147 -135244407 + AT_rich Low_complexity Low_complexity 1 49 0 219 133 0 0 chr6 54037830 54037875 -135241679 + (TGG)n Simple_repeat Simple_repeat 2 46 0 2340 92 7 0 chr6 54039567 54039873 -135239681 + AluY SINE Alu 1 308 -3 193 329 40 26 chr6 54040109 54040185 -135239369 + L2 LINE L2 3170 3246 -26 225 229 66 0 chr6 54041372 54041433 -135238121 + L1MC4a LINE L1 6055 6119 -1689 2292 114 3 0 chr6 54041743 54042049 -135237505 + AluSx SINE Alu 1 307 -5 545 223 43 47 chr6 54042400 54042701 -135236853 + L1ME4a LINE L1 5489 5871 -250 352 332 164 0 chr6 54042766 54042986 -135236568 + L2 LINE L2 3054 3309 -4 1857 159 7 10 chr6 54043159 54043460 -135236094 + AluJb SINE Alu 1 300 -12 610 116 0 32 chr6 54044023 54044118 -135235436 + AluJ/FLAM SINE Alu 2 93 -219 2026 104 73 0 chr6 54044118 54044407 -135235147 + AluSx SINE Alu 1 310 -2 369 165 99 11 chr6 54044408 54044499 -135235055 + AluSg SINE Alu 2 100 -200 570 145 0 125 chr6 54044657 54044753 -135234801 + AluJo/FLAM SINE Alu 1 107 -195 1277 201 73 0 chr6 54044753 54045042 -135234512 + AluSx SINE Alu 1 310 -2 2151 87 33 4 chr6 54045043 54045318 -135234236 + AluSg SINE Alu 2 284 -26 570 145 0 125 chr6 54045318 54045371 -135234183 + AluJo/FLAM SINE Alu 106 133 -169 221 343 137 20 chr6 54045466 54045612 -135233942 - L2 LINE L2 -187 3085 2923 217 360 52 66 chr6 54045699 54046138 -135233416 - L2 LINE L2 -33 3239 2807 1081 285 136 24 chr6 54046174 54046838 -135232716 - L2 LINE L2 -697 2617 1880 1973 139 3 3 chr6 54047584 54047872 -135231682 + AluSx SINE Alu 1 288 -24 768 150 15 23 chr6 54048223 54048356 -135231198 - FLAM_C SINE Alu 0 133 2 4618 174 80 58 chr6 54048597 54048636 -135230918 + L1MC4 LINE L1 6877 6914 -1128 906 213 0 12 chr6 54048636 54048800 -135230754 + FRAM SINE Alu 2 163 -3 2388 110 0 0 chr6 54048800 54049110 -135230444 + AluSx SINE Alu 1 310 -2 4618 174 80 58 chr6 54049110 54049388 -135230166 + L1MC4 LINE L1 6914 7184 -858 1502 109 124 34 chr6 54049388 54049654 -135229900 + AluJb SINE Alu 1 290 -22 4618 174 80 58 chr6 54049654 54050312 -135229242 + L1MC4 LINE L1 7184 7826 -216 2055 142 3 0 chr6 54050312 54050607 -135228947 + AluSx SINE Alu 1 296 -16 4618 174 80 58 chr6 54050607 54050691 -135228863 + L1MC4 LINE L1 7826 7907 -135 2065 122 3 11 chr6 54050691 54050978 -135228576 + AluSq SINE Alu 1 285 -28 423 56 0 0 chr6 54050978 54051032 -135228522 + (CAT)n Simple_repeat Simple_repeat 2 55 0 4618 174 80 58 chr6 54051032 54051107 -135228447 + L1MC4 LINE L1 7906 8041 -1 353 132 0 0 chr6 54051658 54051711 -135227843 - MER66B LTR ERV1 -140 346 294 228 252 137 38 chr6 54051728 54051859 -135227695 - MIR SINE MIR -112 150 7 2383 93 0 19 chr6 54052193 54052506 -135227048 - AluY SINE Alu -4 307 1 741 176 0 23 chr6 54052787 54052918 -135226636 + AluJb SINE Alu 2 129 -183 228 67 0 0 chr6 54052923 54052953 -135226601 + (CA)n Simple_repeat Simple_repeat 2 31 0 388 300 8 46 chr6 54055447 54055577 -135223977 - MIR SINE MIR -61 147 23 562 198 153 13 chr6 54056906 54057063 -135222491 + MER5A DNA MER1_type 9 187 -2 2255 86 0 48 chr6 54057081 54057394 -135222160 - AluY SINE Alu -13 298 1 1993 116 7 14 chr6 54057396 54057688 -135221866 - AluSx SINE Alu -22 290 1 2741 130 44 26 chr6 54059442 54059943 -135219611 + L1MB8 LINE L1 5668 6177 -1 1260 210 36 36 chr6 54060115 54060396 -135219158 + AluJo SINE Alu 1 281 -31 26 30 0 0 chr6 54060396 54060429 -135219125 + AT_rich Low_complexity Low_complexity 1 33 0 1996 128 0 20 chr6 54060706 54061003 -135218551 + AluJo SINE Alu 1 291 -21 933 66 66 0 chr6 54061012 54061133 -135218421 + AluSg1 SINE Alu 1 129 -180 1740 123 20 0 chr6 54061234 54061478 -135218076 - AluSx SINE Alu -63 249 1 29 28 0 0 chr6 54061779 54061815 -135217739 + AT_rich Low_complexity Low_complexity 1 36 0 1242 187 112 22 chr6 54064199 54064467 -135215087 + AluJb SINE Alu 1 292 -20 212 304 194 49 chr6 54064617 54064946 -135214608 - L2 LINE L2 -54 3259 2883 1016 103 19 13 chr6 54065046 54065201 -135214353 + AluSg1 SINE Alu 123 278 -34 1955 133 0 7 chr6 54065851 54066160 -135213394 - AluY SINE Alu -4 307 1 348 120 0 7 chr6 54066323 54066402 -135213152 - AluS SINE Alu -242 59 1 457 270 25 51 chr6 54066403 54066599 -135212955 + L2 LINE L2 3122 3312 -1 438 257 159 60 chr6 54066607 54066922 -135212632 - L2 LINE L2 -611 2703 2358 1078 156 0 0 chr6 54067111 54067278 -135212276 + AluSg/x SINE Alu 135 301 -9 422 259 49 21 chr6 54067411 54067554 -135212000 + MIR SINE MIR 2 148 -114 21 36 0 0 chr6 54068504 54068532 -135211022 + GC_rich Low_complexity Low_complexity 1 28 0 185 164 0 18 chr6 54068652 54068707 -135210847 + (CCG)n Simple_repeat Simple_repeat 3 56 0 696 141 0 0 chr6 54068851 54068950 -135210604 - AluJ/FLAM SINE Alu -212 100 2 2115 213 52 48 chr6 54069265 54069805 -135209749 - MLT1F LTR MaLR 0 542 1 1658 236 91 96 chr6 54069894 54069954 -135209600 - L1ME3A LINE L1 -7 6163 6104 2201 101 0 0 chr6 54069954 54070273 -135209281 + AluSx SINE Alu 5 323 0 1658 236 91 96 chr6 54070273 54070515 -135209039 - L1ME3A LINE L1 -66 6104 5862 1320 189 43 39 chr6 54070515 54070821 -135208733 + AluJo SINE Alu 1 307 0 1658 236 91 96 chr6 54070821 54071330 -135208224 - L1ME3A LINE L1 -308 5862 5353 2298 105 0 10 chr6 54071337 54071642 -135207912 - AluSx SINE Alu -10 302 1 613 254 0 8 chr6 54071741 54071875 -135207679 - FLAM_A SINE Alu 0 133 1 2231 103 0 39 chr6 54071887 54072198 -135207356 - AluSx SINE Alu -13 299 1 2199 118 3 3 chr6 54072207 54072513 -135207041 - AluSx SINE Alu -6 306 1 1828 166 24 37 chr6 54072900 54073279 -135206275 - MLT1A2 LTR MaLR 0 374 1 2329 67 13 22 chr6 54073967 54074280 -135205274 + AluY SINE Alu 1 310 -1 30 77 0 0 chr6 54075167 54075232 -135204322 + AT_rich Low_complexity Low_complexity 1 65 0 1419 143 128 12 chr6 54075338 54075596 -135203958 - AluJo SINE Alu -14 288 1 866 158 100 59 chr6 54075788 54076167 -135203387 - LTR7 LTR ERV1 -13 437 1 474 122 20 51 chr6 54076878 54076976 -135202578 + AluJ/FRAM SINE Alu 217 311 -1 229 301 27 0 chr6 54077073 54077146 -135202408 - L2 LINE L2 -208 3064 2990 255 316 26 17 chr6 54077338 54077455 -135202099 - L2 LINE L2 -330 2942 2825 1063 148 0 0 chr6 54077581 54077730 -135201824 - AluJo SINE Alu -80 232 84 1814 155 10 16 chr6 54077740 54078043 -135201511 - AluJo SINE Alu -11 301 1 1083 136 0 0 chr6 54078250 54078397 -135201157 + AluJo SINE Alu 5 151 -161 1367 183 83 21 chr6 54078520 54078809 -135200745 + AluJo SINE Alu 1 307 -5 545 299 84 29 chr6 54078829 54079137 -135200417 + HAL1 LINE L1 117 441 -2066 211 343 68 0 chr6 54079237 54079310 -135200244 - L2 LINE L2 -40 3232 3155 352 293 0 23 chr6 54079748 54079881 -135199673 - LTR67 LTR ERVL 0 557 428 2174 118 0 23 chr6 54080151 54080457 -135199097 - AluSx SINE Alu -13 299 1 962 295 90 29 chr6 54080515 54081003 -135198551 - ERVL LTR ERVL -335 5429 4912 2021 172 55 70 chr6 54081024 54081512 -135198042 + MLT1D LTR MaLR 1 481 -24 1709 166 35 10 chr6 54081526 54081816 -135197738 - AluJb SINE Alu -15 297 1 2232 112 3 3 chr6 54081958 54082262 -135197292 - AluSq SINE Alu -9 304 1 596 294 12 45 chr6 54082400 54082821 -135196733 - ERVL LTR ERVL -1130 4524 4053 291 293 32 16 chr6 54083252 54083375 -135196179 + LTR67 LTR ERVL 432 556 -1 663 316 124 24 chr6 54083443 54083488 -135196066 - ERVL LTR ERVL -1837 3927 3888 1962 76 90 48 chr6 54083488 54083778 -135195776 - AluY SINE Alu -9 302 1 663 316 124 24 chr6 54083778 54084191 -135195363 - ERVL LTR ERVL -1876 3888 3423 520 337 72 39 chr6 54084566 54084898 -135194656 - ERVL LTR ERVL -2050 2946 2604 195 42 0 0 chr6 54084958 54084982 -135194572 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 186 43 0 0 chr6 54085026 54085049 -135194505 + (TC)n Simple_repeat Simple_repeat 2 24 0 709 175 7 44 chr6 54085049 54085074 -135194480 - FLAM_C SINE Alu -169 133 109 2192 121 0 0 chr6 54085074 54085363 -135194191 + AluSx SINE Alu 1 289 -23 225 0 0 0 chr6 54085363 54085388 -135194166 + (GA)n Simple_repeat Simple_repeat 2 26 0 709 175 7 44 chr6 54085388 54085498 -135194056 - FLAM_C SINE Alu -191 111 2 287 216 0 62 chr6 54085500 54085597 -135193957 - L1ME3 LINE L1 -150 6012 5922 * 371 208 10 52 chr6 54085595 54085691 -135193863 - L1ME3 LINE L1 -621 5543 5452 275 138 0 86 chr6 54085703 54085761 -135193793 + MER74B LTR ERVL 1 53 -569 2212 113 0 0 chr6 54086123 54086443 -135193111 + AluSx SINE Alu 1 320 0 1821 162 0 32 chr6 54086901 54087210 -135192344 + AluJo SINE Alu 1 299 -13 834 209 13 0 chr6 54087320 54087478 -135192076 + L1ME1 LINE L1 5774 5933 -233 748 171 8 8 chr6 54087478 54087607 -135191947 + AluJo/FLAM SINE Alu 2 130 -182 1505 131 29 112 chr6 54087609 54087923 -135191631 + AluYb8 SINE Alu 1 324 0 204 56 56 0 chr6 54087923 54087959 -135191595 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1867 155 0 11 chr6 54087968 54088246 -135191308 + AluJb SINE Alu 1 275 -37 774 209 91 9 chr6 54088258 54088478 -135191076 + L1ME1 LINE L1 5924 6161 -5 375 250 58 41 chr6 54088531 54088703 -135190851 + L1MEd LINE L1 4 178 -5941 1381 142 55 11 chr6 54088900 54089174 -135190380 + L1M4 LINE L1 5329 5614 -570 296 226 11 43 chr6 54089175 54089268 -135190286 + MER21B LTR ERV1 159 248 -615 1422 215 44 36 chr6 54089301 54089687 -135189867 + MER21B LTR ERV1 329 717 -146 309 135 0 0 chr6 54089975 54090027 -135189527 + (TTCC)n Simple_repeat Simple_repeat 4 55 0 881 91 0 0 chr6 54090493 54090626 -135188928 + AluSg/x SINE Alu 174 306 0 612 345 4 0 chr6 54091154 54091406 -135188148 + Harlequin LTR ERV1 718 970 -6815 1165 309 44 29 chr6 54091641 54092389 -135187165 + Harlequin LTR ERV1 1290 2048 -5737 2043 167 70 32 chr6 54092405 54092847 -135186707 + LTR2B LTR ERV1 32 490 0 203 265 0 0 chr6 54092848 54092897 -135186657 + GA-rich Low_complexity Low_complexity 4 52 0 213 39 0 0 chr6 54092915 54092941 -135186613 + (GA)n Simple_repeat Simple_repeat 2 27 0 506 152 131 0 chr6 54092941 54093040 -135186514 + LTR18B LTR ERVL 346 457 -157 * 627 129 8 32 chr6 54093038 54093162 -135186392 + LTR18B LTR ERVL 225 345 -269 313 309 0 46 chr6 54093177 54093235 -135186319 + GA-rich Low_complexity Low_complexity 1 60 -107 2609 68 0 3 chr6 54093235 54093546 -135186008 + AluY SINE Alu 1 310 -1 313 309 0 46 chr6 54093546 54093662 -135185892 + GA-rich Low_complexity Low_complexity 60 167 0 239 327 60 48 chr6 54093811 54093864 -135185690 + L3 LINE CR1 1408 1459 -118 2309 96 0 17 chr6 54093864 54094165 -135185389 + AluSc SINE Alu 1 296 -13 239 327 60 48 chr6 54094165 54094279 -135185275 + L3 LINE CR1 1459 1577 0 706 241 115 12 chr6 54094341 54094594 -135184960 - MER102a DNA MER1_type -3 327 49 2429 79 23 0 chr6 54094696 54094999 -135184555 + AluSx SINE Alu 1 310 -2 1082 330 34 39 chr6 54095451 54096339 -135183215 + Harlequin LTR ERV1 3104 3986 -2663 611 314 7 21 chr6 54096354 54096406 -135183148 + Harlequin LTR ERV1 5473 5524 -2261 2309 65 0 35 chr6 54096406 54096696 -135182858 + AluY SINE Alu 21 300 -11 611 314 7 21 chr6 54096696 54096933 -135182621 + Harlequin LTR ERV1 5524 5758 -2027 283 297 8 31 chr6 54097162 54097290 -135182264 + Harlequin LTR ERV1 3028 3152 -3744 2337 66 10 17 chr6 54097642 54097943 -135181611 - AluY SINE Alu -12 299 1 581 265 61 87 chr6 54098007 54098091 -135181463 + Harlequin LTR ERV1 3386 3471 -3425 2072 96 10 48 chr6 54098091 54098404 -135181150 - AluSx SINE Alu -11 301 1 581 265 61 87 chr6 54098404 54099006 -135180548 + Harlequin LTR ERV1 3471 4054 -2842 786 234 0 0 chr6 54099688 54099825 -135179729 - FRAM SINE Alu -39 137 1 2510 79 0 9 chr6 54100330 54100646 -135178908 + AluSq SINE Alu 1 313 0 2021 138 0 22 chr6 54100666 54100977 -135178577 + AluSx SINE Alu 1 304 -8 621 269 155 39 chr6 54101045 54101432 -135178122 + LTR67 LTR ERVL 113 544 -13 2245 97 3 7 chr6 54101679 54101979 -135177575 + AluSq SINE Alu 1 299 -14 251 259 130 28 chr6 54102101 54102209 -135177345 - L2 LINE L2 -16 3297 3179 575 256 17 44 chr6 54102394 54102560 -135176994 + MIR SINE MIR 33 195 -67 2550 102 39 0 chr6 54102560 54102921 -135176633 - THE1C LTR MaLR 0 375 1 575 256 17 44 chr6 54102921 54102934 -135176620 + MIR SINE MIR 195 207 -55 318 347 0 16 chr6 54103502 54103626 -135175928 - MIR SINE MIR 0 262 141 377 234 190 15 chr6 54103693 54103830 -135175724 - MIR SINE MIR -97 165 5 331 257 46 64 chr6 54103830 54103939 -135175615 + MIR SINE MIR 156 262 0 1394 248 74 52 chr6 54104071 54104525 -135175029 - L2 LINE L2 0 3313 2871 1497 212 79 79 chr6 54104525 54104982 -135174572 - LTR16A1 LTR ERVL 0 457 1 1394 248 74 52 chr6 54104982 54105135 -135174419 - L2 LINE L2 -442 2871 1984 2469 233 15 9 chr6 54105188 54105720 -135173834 + MLT1F LTR MaLR 8 542 0 1553 210 146 80 chr6 54105721 54105908 -135173646 - L2 LINE L2 -1353 1961 1788 2365 80 10 0 chr6 54105908 54106196 -135173358 + AluSx SINE Alu 1 291 -21 1553 210 146 80 chr6 54106196 54106304 -135173250 - L2 LINE L2 -1526 1788 1689 2075 133 10 3 chr6 54106304 54106597 -135172957 + AluJb SINE Alu 1 295 -17 1553 210 146 80 chr6 54106597 54106924 -135172630 - L2 LINE L2 -1625 1689 1297 358 246 128 67 chr6 54106939 54106965 -135172589 + Charlie2 DNA MER1_type 48 71 -2711 2361 98 0 7 chr6 54106965 54107262 -135172292 - AluSg SINE Alu -15 295 1 358 246 128 67 chr6 54107262 54107430 -135172124 + Charlie2 DNA MER1_type 71 254 -2528 229 325 0 36 chr6 54107437 54107520 -135172034 + MIR SINE MIR 2 81 -181 1211 267 75 6 chr6 54107520 54107842 -135171712 + MLT1F LTR MaLR 1 344 -198 936 128 15 0 chr6 54107843 54107976 -135171578 + AluJb SINE Alu 2 136 -176 1710 154 17 40 chr6 54107977 54108297 -135171257 + AluJb SINE Alu 3 312 0 2993 175 77 35 chr6 54108298 54108393 -135171161 + L1MD2 LINE L1 5202 5291 -1068 2033 144 3 28 chr6 54108393 54108712 -135170842 + AluSx SINE Alu 1 311 -1 2993 175 77 35 chr6 54108712 54108789 -135170765 + L1MD2 LINE L1 5291 5363 -996 1389 154 142 4 chr6 54108789 54109049 -135170505 + AluSg1 SINE Alu 3 298 -11 2993 175 77 35 chr6 54109049 54109552 -135170002 + L1MD2 LINE L1 5363 5899 -460 2194 97 0 85 chr6 54109552 54109882 -135169672 + AluSx SINE Alu 1 302 -10 2993 175 77 35 chr6 54109882 54109977 -135169577 + L1MD2 LINE L1 5899 5988 -371 893 180 81 5 chr6 54109985 54110207 -135169347 + L1MB3 LINE L1 4362 4600 -1546 3041 57 0 0 chr6 54110208 54110575 -135168979 + L1PA7 LINE L1 5780 6146 -8 2178 161 26 67 chr6 54110582 54110669 -135168885 + L1MB3 LINE L1 5127 5216 -968 2150 137 0 3 chr6 54110669 54110969 -135168585 + AluSx SINE Alu 1 299 -13 2178 161 26 67 chr6 54110969 54110981 -135168573 + L1MB3 LINE L1 5216 5227 -957 1557 201 7 18 chr6 54110981 54111260 -135168294 + AluJb SINE Alu 1 276 -36 2178 161 26 67 chr6 54111260 54111766 -135167788 + L1MB3 LINE L1 5227 5706 -478 264 188 88 12 chr6 54111767 54111847 -135167707 + MER52A LTR ERV1 1 86 -1669 6530 183 70 46 chr6 54111847 54113356 -135166198 + MER52A LTR ERV1 211 1755 0 2402 97 0 0 chr6 54113368 54113676 -135165878 + AluY SINE Alu 1 308 -3 1570 156 70 151 chr6 54113681 54114199 -135165355 + L1MB3 LINE L1 5708 6183 0 760 117 8 0 chr6 54114195 54114315 -135165239 + L1MB7 LINE L1 5814 5934 -250 * 2338 109 0 3 chr6 54114380 54114683 -135164871 + AluSx SINE Alu 1 302 -10 492 192 39 0 chr6 54114721 54114825 -135164729 + L1MB7 LINE L1 5439 5546 -638 1192 139 0 0 chr6 54114825 54114991 -135164563 - AluJo SINE Alu -10 302 137 276 30 0 0 chr6 54114997 54115030 -135164524 + (TG)n Simple_repeat Simple_repeat 2 34 0 215 167 21 0 chr6 54115039 54115087 -135164467 + (TA)n Simple_repeat Simple_repeat 1 49 0 908 135 0 8 chr6 54115089 54115222 -135164332 - AluJo SINE Alu -180 132 1 2670 179 25 48 chr6 54115222 54115763 -135163791 + L1MB7 LINE L1 5537 6062 -122 1827 141 7 59 chr6 54115763 54115846 -135163708 + AluSx SINE Alu 1 87 -225 2545 58 0 0 chr6 54115846 54116140 -135163414 + AluY SINE Alu 1 294 -17 1827 141 7 59 chr6 54116140 54116361 -135163193 + AluSx SINE Alu 87 289 -23 2670 179 25 48 chr6 54116361 54116472 -135163082 + L1MB7 LINE L1 6062 6174 -10 583 138 0 0 chr6 54117336 54117423 -135162131 + 5S rRNA rRNA 1 87 -34 908 101 0 7 chr6 54117458 54117597 -135161957 + (GAAA)n Simple_repeat Simple_repeat 2 139 0 800 169 0 7 chr6 54117830 54117966 -135161588 + AluJb SINE Alu 163 297 -15 210 37 0 0 chr6 54117974 54118001 -135161553 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1927 135 22 19 chr6 54118119 54118431 -135161123 - AluSp SINE Alu 0 313 1 2112 93 0 0 chr6 54118464 54118722 -135160832 + AluSx SINE Alu 41 298 -14 1007 80 14 11 chr6 54119323 54119474 -135160080 - THE1B LTR MaLR -29 335 198 403 281 120 6 chr6 54119688 54119855 -135159699 - MER5A DNA MER1_type -2 187 2 7928 113 19 76 chr6 54119917 54120337 -135159217 + Tigger1 DNA MER2_type 1 444 -1974 2098 118 4 0 chr6 54120337 54120617 -135158937 + AluSx SINE Alu 1 281 -31 342 0 0 0 chr6 54120620 54120658 -135158896 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 7928 113 19 76 chr6 54120658 54120677 -135158877 + Tigger1 DNA MER2_type 446 465 -1953 2520 87 0 0 chr6 54120677 54120986 -135158568 - AluSq SINE Alu -4 309 1 7928 113 19 76 chr6 54120986 54121574 -135157980 + Tigger1 DNA MER2_type 465 1085 -1333 2037 112 4 0 chr6 54121574 54121842 -135157712 - AluSg SINE Alu -39 271 3 7928 113 19 76 chr6 54121842 54122068 -135157486 + Tigger1 DNA MER2_type 1085 1167 -1251 2290 118 0 0 chr6 54122068 54122365 -135157189 - AluSx SINE Alu -15 297 1 7928 113 19 76 chr6 54122365 54122565 -135156989 + Tigger1 DNA MER2_type 1167 1377 -1041 1970 116 16 3 chr6 54122862 54123181 -135156373 - Tigger1 DNA MER2_type -1444 974 652 903 123 0 0 chr6 54123181 54123311 -135156243 + AluSg/x SINE Alu 183 312 0 1184 98 0 74 chr6 54123313 54123366 -135156188 + Tigger1 DNA MER2_type 1403 1458 -960 2097 147 0 3 chr6 54123366 54123678 -135155876 - AluSx SINE Alu -1 311 1 1877 155 3 17 chr6 54123688 54123979 -135155575 - AluJo SINE Alu -25 287 1 1184 98 0 74 chr6 54123979 54124117 -135155437 + Tigger1 DNA MER2_type 1467 1590 -828 846 147 0 23 chr6 54124117 54124246 -135155308 + FLAM_C SINE Alu 2 127 -6 10661 62 14 14 chr6 54124268 54125657 -135153897 + SVA Other Other 3 1391 0 977 86 49 31 chr6 54125665 54125828 -135153726 + Tigger1 DNA MER2_type 1583 1748 -670 707 179 0 0 chr6 54125828 54125940 -135153614 + FLAM_C SINE Alu 2 113 -30 483 259 63 69 chr6 54126253 54126381 -135153173 - MIR SINE MIR -10 252 124 2261 60 3 40 chr6 54126381 54126679 -135152875 + AluSc SINE Alu 1 287 -22 483 259 63 69 chr6 54126679 54126724 -135152830 - MIR SINE MIR -138 124 80 419 161 0 115 chr6 54126819 54126949 -135152605 - FLAM_A SINE Alu -18 115 1 216 317 49 49 chr6 54127853 54127976 -135151578 + MIR3 SINE MIR 1 123 -85 * 245 229 12 72 chr6 54127952 54128035 -135151519 + MIR SINE MIR 154 231 -31 315 333 58 35 chr6 54128773 54128944 -135150610 - MIR3 SINE MIR -15 193 19 207 45 0 68 chr6 54128974 54129018 -135150536 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 342 0 0 0 chr6 54129018 54129056 -135150498 + (TG)n Simple_repeat Simple_repeat 1 38 0 792 204 8 0 chr6 54129181 54129313 -135150241 - AluJ SINE Alu -54 258 126 599 122 215 0 chr6 54129330 54129437 -135150117 + AluSg SINE Alu 2 131 -179 1230 115 344 9 chr6 54129440 54129658 -135149896 + AluSg1 SINE Alu 1 291 -18 850 173 0 0 chr6 54129659 54129786 -135149768 - AluJ SINE Alu -185 127 1 2119 142 0 0 chr6 54129801 54130097 -135149457 - AluSx SINE Alu -16 296 1 911 80 0 0 chr6 54130183 54130296 -135149258 + AluSc SINE Alu 163 275 -34 2155 124 3 3 chr6 54130431 54130730 -135148824 - AluSx SINE Alu -13 299 1 2254 110 0 3 chr6 54131069 54131368 -135148186 - AluSx SINE Alu -14 298 1 608 159 40 40 chr6 54131372 54131498 -135148056 - L1PA16 LINE L1 -4 6162 6037 840 240 88 5 chr6 54133171 54133388 -135146166 + MIR SINE MIR 17 251 -11 188 291 76 25 chr6 54133393 54133472 -135146082 - MIR SINE MIR -90 118 36 2228 123 10 0 chr6 54134957 54135250 -135144304 + AluSx SINE Alu 1 296 -16 312 203 40 0 chr6 54136638 54136712 -135142842 - MLT1K LTR MaLR 0 588 512 22 0 0 0 chr6 54137086 54137108 -135142446 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr6 54137140 54137164 -135142390 + (A)n Simple_repeat Simple_repeat 1 24 0 199 400 69 17 chr6 54137756 54137931 -135141623 - L2 LINE L2 -6 3307 3124 230 315 165 0 chr6 54137936 54138063 -135141491 - L2 LINE L2 -1493 1821 1674 27 49 0 0 chr6 54139085 54139126 -135140428 + AT_rich Low_complexity Low_complexity 1 41 0 * 1026 140 0 6 chr6 54139113 54139277 -135140277 - AluJb SINE Alu -17 295 133 213 39 0 0 chr6 54139277 54139303 -135140251 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2212 88 0 0 chr6 54139304 54139588 -135139966 - AluSc SINE Alu -25 284 1 2033 135 0 0 chr6 54139660 54139963 -135139591 - AluSx SINE Alu -9 303 1 258 296 102 0 chr6 54140078 54140166 -135139388 + L2 LINE L2 3187 3283 -30 1602 135 0 152 chr6 54140187 54140296 -135139258 + AluJb SINE Alu 1 125 -177 2214 77 0 7 chr6 54140296 54140583 -135138971 + AluSg SINE Alu 9 293 -17 1602 135 0 152 chr6 54140583 54140829 -135138725 + AluJb SINE Alu 125 302 0 2353 76 0 0 chr6 54140902 54141193 -135138361 + AluSc SINE Alu 1 291 -18 447 291 181 0 chr6 54141224 54141406 -135138148 + MIR SINE MIR 48 262 0 1847 138 0 51 chr6 54141869 54142015 -135137539 + AluJb SINE Alu 1 124 -188 1887 114 0 15 chr6 54142015 54142286 -135137268 + AluSx SINE Alu 24 290 -22 1847 138 0 51 chr6 54142286 54142451 -135137103 + AluJb SINE Alu 124 296 -16 181 393 77 12 chr6 54143181 54143349 -135136205 + L3b LINE CR1 1241 1419 -164 2473 66 0 0 chr6 54146549 54146852 -135132702 - AluSg SINE Alu -7 303 1 470 275 105 20 chr6 54150989 54151189 -135128365 + MIR SINE MIR 46 262 0 979 125 0 0 chr6 54151958 54152094 -135127460 + AluSq/x SINE Alu 1 136 -177 2192 99 17 0 chr6 54152094 54152396 -135127158 + AluSx SINE Alu 1 307 -5 419 223 22 86 chr6 54152398 54152537 -135127017 + MIR SINE MIR 86 215 -47 309 282 145 8 chr6 54153012 54153143 -135126411 + MIR SINE MIR 104 252 -10 2008 117 16 7 chr6 54153173 54153482 -135126072 + AluSx SINE Alu 1 312 0 205 167 0 0 chr6 54154506 54154542 -135125012 + (CGGA)n Simple_repeat Simple_repeat 2 37 0 27 29 0 0 chr6 54155731 54155765 -135123789 + GC_rich Low_complexity Low_complexity 1 34 0 2098 71 4 11 chr6 54156490 54156770 -135122784 + AluSx SINE Alu 1 278 -34 337 280 122 0 chr6 54157140 54157247 -135122307 + L1ME4a LINE L1 5709 5828 -293 333 252 30 89 chr6 54157321 54157417 -135122137 + L1ME4a LINE L1 5977 6064 -57 2444 58 0 10 chr6 54157417 54157729 -135121825 - AluY SINE Alu -2 309 1 333 252 30 89 chr6 54157729 54157767 -135121787 + L1ME4a LINE L1 6064 6103 -18 735 158 234 6 chr6 54157768 54157939 -135121615 - AluSg/x SINE Alu 0 310 101 569 240 74 0 chr6 54157943 54158118 -135121436 + L2 LINE L2 3118 3305 -8 2188 92 3 3 chr6 54158136 54158441 -135121113 - AluSx SINE Alu -7 305 1 527 237 197 3 chr6 54158694 54158722 -135120832 - L1ME4a LINE L1 -58 6063 6042 2173 109 3 0 chr6 54158722 54159026 -135120528 + AluSp SINE Alu 1 305 -8 527 237 197 3 chr6 54159026 54159292 -135120262 - L1ME4a LINE L1 -79 6042 5712 399 183 43 78 chr6 54159567 54159682 -135119872 + L2 LINE L2 607 717 -2597 1885 234 57 30 chr6 54159687 54160213 -135119341 + MLT1H LTR MaLR 8 547 -2 4584 247 117 31 chr6 54160259 54160419 -135119135 + L2 LINE L2 793 938 -2376 1072 154 73 81 chr6 54160419 54160551 -135119003 + ORSL DNA AcHobo 2 133 -142 2249 91 3 0 chr6 54160551 54160848 -135118706 - AluSp SINE Alu -15 298 1 1072 154 73 81 chr6 54160848 54160988 -135118566 + ORSL DNA AcHobo 133 272 -3 4584 247 117 31 chr6 54160988 54161005 -135118549 + L2 LINE L2 938 952 -2362 2235 98 0 22 chr6 54161005 54161321 -135118233 - AluSx SINE Alu -1 311 3 4584 247 117 31 chr6 54161321 54161513 -135118041 + L2 LINE L2 952 1126 -2188 2078 116 0 10 chr6 54161513 54161814 -135117740 - AluY SINE Alu -13 298 1 4584 247 117 31 chr6 54161814 54162818 -135116736 + L2 LINE L2 1126 2043 -1271 755 128 0 114 chr6 54162818 54162967 -135116587 + FLAM_C SINE Alu 1 132 -1 4584 247 117 31 chr6 54162967 54163293 -135116261 + L2 LINE L2 2043 2340 -974 1956 108 4 0 chr6 54163293 54163571 -135115983 - AluSp SINE Alu -5 308 30 4584 247 117 31 chr6 54163571 54163623 -135115931 + L2 LINE L2 2340 2698 -616 1189 227 0 0 chr6 54163643 54163912 -135115642 + L1MD3 LINE L1 7727 7995 0 686 237 73 75 chr6 54163942 54164053 -135115501 + L2 LINE L2 2776 2886 -427 2204 81 0 36 chr6 54164053 54164362 -135115192 - AluY SINE Alu -13 298 1 686 237 73 75 chr6 54164362 54164584 -135114970 + L2 LINE L2 2886 3113 -200 2372 74 0 3 chr6 54164584 54164895 -135114659 - AluSg SINE Alu 0 310 1 686 237 73 75 chr6 54164895 54164907 -135114647 + L2 LINE L2 3113 3124 -189 559 193 29 21 chr6 54165041 54165181 -135114373 + AluSg/x SINE Alu 157 297 -13 445 273 21 91 chr6 54165239 54165290 -135114264 - MIR SINE MIR -73 189 136 2125 122 0 0 chr6 54165290 54165593 -135113961 - AluSx SINE Alu -9 303 1 445 273 21 91 chr6 54165593 54165728 -135113826 - MIR SINE MIR -126 136 16 1013 246 191 75 chr6 54165746 54166279 -135113275 + MLT1G1 LTR MaLR 1 595 0 349 250 65 19 chr6 54166313 54166421 -135113133 + MIR3 SINE MIR 94 206 -2 428 277 13 45 chr6 54166618 54166791 -135112763 + MIR SINE MIR 36 206 -32 2545 103 14 30 chr6 54167141 54167511 -135112043 + THE1B LTR MaLR 1 364 0 261 337 22 0 chr6 54167912 54168001 -135111553 + MIR SINE MIR 53 143 -119 846 247 31 13 chr6 54168010 54168237 -135111317 - MIR SINE MIR -29 233 3 2206 95 24 0 chr6 54169577 54169873 -135109681 + AluSq SINE Alu 1 303 -10 1836 118 34 0 chr6 54170146 54170409 -135109145 + AluSx SINE Alu 1 272 -40 2271 110 0 0 chr6 54170446 54170755 -135108799 + AluSx SINE Alu 2 310 -2 2086 108 3 0 chr6 54170756 54171172 -135108382 - AluSx SINE Alu 0 417 1 558 147 0 85 chr6 54171197 54171326 -135108228 - LTR38B LTR ERV1 -492 118 1 1645 143 0 119 chr6 54171687 54172030 -135107524 + AluJo SINE Alu 1 302 0 1957 135 25 19 chr6 54172053 54172094 -135107460 - L1MB3 LINE L1 -166 6017 5978 2237 105 3 0 chr6 54172094 54172399 -135107155 - AluSg SINE Alu -4 306 1 1957 135 25 19 chr6 54172399 54172721 -135106833 - L1MB3 LINE L1 -205 5978 5652 1927 98 76 4 chr6 54172734 54173010 -135106544 - AluSp SINE Alu -17 296 1 773 125 0 0 chr6 54173996 54174100 -135105454 + U6 snRNA snRNA 1 104 -3 2208 86 0 0 chr6 54174113 54174424 -135105130 + AluSg1 SINE Alu 1 311 0 2077 127 3 13 chr6 54174424 54174740 -135104814 + AluSq SINE Alu 1 313 0 1580 119 0 0 chr6 54174999 54175217 -135104337 - AluSg/x SINE Alu -13 297 80 28 29 0 0 chr6 54175225 54175260 -135104294 + AT_rich Low_complexity Low_complexity 1 35 0 1328 224 112 26 chr6 54175932 54175958 -135103596 - L2 LINE L2 0 3313 3291 1919 99 31 62 chr6 54175958 54176280 -135103274 + AluSx SINE Alu 1 312 0 1328 224 112 26 chr6 54176280 54176636 -135102918 - L2 LINE L2 -22 3291 2898 238 314 112 72 chr6 54176648 54176925 -135102629 - L2 LINE L2 -19 3253 2966 650 217 106 5 chr6 54179294 54179321 -135100233 + MIR SINE MIR 10 33 -229 998 195 6 0 chr6 54179321 54179495 -135100059 + FAM SINE Alu 1 175 0 2158 90 0 39 chr6 54179500 54179812 -135099742 + AluSc SINE Alu 1 300 -9 650 217 106 5 chr6 54179812 54179985 -135099569 + MIR SINE MIR 36 237 -25 899 194 32 68 chr6 54180245 54180327 -135099227 - MIR SINE MIR 0 262 179 1946 130 13 3 chr6 54180327 54180626 -135098928 - AluSq SINE Alu -11 302 1 899 194 32 68 chr6 54180626 54180795 -135098759 - MIR SINE MIR -83 179 20 27 49 0 0 chr6 54181335 54181376 -135098178 + AT_rich Low_complexity Low_complexity 1 41 0 221 180 0 130 chr6 54182164 54182264 -135097290 + L2 LINE L2 2553 2639 -675 * 570 309 174 26 chr6 54182261 54182572 -135096982 + L2 LINE L2 2915 3271 -1 2190 117 0 0 chr6 54182652 54182950 -135096604 + AluSg SINE Alu 1 298 -12 462 308 103 23 chr6 54183448 54183587 -135095967 + MIR SINE MIR 11 174 -88 1651 171 3 34 chr6 54183587 54183909 -135095645 + AluJo SINE Alu 1 312 0 462 308 103 23 chr6 54183909 54183983 -135095571 + MIR SINE MIR 174 241 -21 2263 98 0 3 chr6 54183986 54184293 -135095261 + AluSq SINE Alu 1 306 -7 2081 120 0 7 chr6 54184538 54184838 -135094716 - AluSx SINE Alu -14 298 1 192 308 39 62 chr6 54185346 54185476 -135094078 + L2 LINE L2 3039 3165 -107 2183 105 23 0 chr6 54185770 54186075 -135093479 - AluSx SINE Alu 0 312 1 2198 103 0 0 chr6 54186165 54186466 -135093088 - AluSx SINE Alu -11 301 1 259 213 173 0 chr6 54187300 54187375 -135092179 + MIR SINE MIR 36 123 -85 2356 70 0 7 chr6 54187681 54187982 -135091572 - AluSq SINE Alu -14 299 1 2331 72 3 10 chr6 54191096 54191400 -135088154 - AluSp SINE Alu -11 302 1 22 0 0 0 chr6 54192830 54192852 -135086702 + AT_rich Low_complexity Low_complexity 1 22 0 722 87 39 0 chr6 54194454 54194558 -135084996 - AluSx SINE Alu -4 305 198 901 96 8 0 chr6 54194558 54194683 -135084871 - AluSx SINE Alu -186 126 1 352 260 87 33 chr6 54196710 54196860 -135082694 - MIR3 SINE MIR -16 192 35 813 211 27 11 chr6 54196881 54197066 -135082488 - MER20 DNA MER1_type -1 218 31 1610 168 57 0 chr6 54198103 54198383 -135081171 + AluJo SINE Alu 10 305 -7 236 159 0 23 chr6 54199729 54199773 -135079781 - MIR SINE MIR -62 146 104 468 0 0 0 chr6 54201518 54201570 -135077984 + (CA)n Simple_repeat Simple_repeat 2 53 0 228 100 0 0 chr6 54201570 54201610 -135077944 + (TC)n Simple_repeat Simple_repeat 1 40 0 226 182 45 0 chr6 54201613 54201657 -135077897 - MIR3 SINE MIR -11 197 152 333 0 0 0 chr6 54201702 54201739 -135077815 + (CA)n Simple_repeat Simple_repeat 1 37 0 261 0 0 0 chr6 54201738 54201767 -135077787 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 226 182 45 0 chr6 54201770 54201814 -135077740 - MIR3 SINE MIR -11 197 152 270 0 0 0 chr6 54201858 54201888 -135077666 + (CA)n Simple_repeat Simple_repeat 2 31 0 * 315 0 0 0 chr6 54201887 54201922 -135077632 + (TC)n Simple_repeat Simple_repeat 1 35 0 268 312 167 0 chr6 54201925 54202063 -135077491 - MIR3 SINE MIR -11 197 37 2333 79 0 3 chr6 54203922 54204225 -135075329 - AluY SINE Alu -9 302 1 225 99 28 84 chr6 54205099 54205194 -135074360 + (CAGCC)n Simple_repeat Simple_repeat 1 89 0 248 235 7 0 chr6 54209641 54209777 -135069777 + G-rich Low_complexity Low_complexity 5 141 0 22 35 0 0 chr6 54209850 54209879 -135069675 + GC_rich Low_complexity Low_complexity 1 29 0 206 61 0 30 chr6 54209965 54209998 -135069556 + (CGG)n Simple_repeat Simple_repeat 3 34 0 193 195 0 24 chr6 54213076 54213117 -135066437 + L2 LINE L2 3172 3211 -61 2265 86 0 3 chr6 54213770 54214071 -135065483 + AluSg SINE Alu 1 300 -10 332 339 161 15 chr6 54214290 54214550 -135065004 + L2 LINE L2 2968 3265 -7 2167 67 27 27 chr6 54214802 54215102 -135064452 - AluY SINE Alu -11 300 1 23 0 0 0 chr6 54216583 54216606 -135062948 + GC_rich Low_complexity Low_complexity 1 23 0 1880 110 34 3 chr6 54218499 54218790 -135060764 - AluSg SINE Alu -10 300 1 394 270 202 6 chr6 54219677 54219855 -135059699 + MIR SINE MIR 42 254 -8 1581 127 31 52 chr6 54221345 54221636 -135057918 - AluSx SINE Alu -20 292 8 281 170 38 0 chr6 54221696 54221749 -135057805 + Alu SINE Alu 245 299 -3 2333 86 0 3 chr6 54223879 54224182 -135055372 + AluSp SINE Alu 1 302 -11 742 167 14 51 chr6 54225109 54225247 -135054307 - FLAM_A SINE Alu 0 133 1 831 278 146 19 chr6 54225991 54226369 -135053185 - L2 LINE L2 -6 3307 2882 1829 76 0 8 chr6 54227092 54227328 -135052226 - AluSc SINE Alu -21 288 55 2185 96 0 40 chr6 54229072 54229395 -135050159 + AluY SINE Alu 2 311 0 1458 166 62 21 chr6 54229451 54229740 -135049814 + AluJb SINE Alu 1 301 -11 2055 133 0 7 chr6 54229785 54230087 -135049467 + AluSx SINE Alu 1 300 -12 888 167 19 12 chr6 54230087 54230249 -135049305 + AluSg/x SINE Alu 134 296 -16 373 272 103 82 chr6 54232299 54232542 -135047012 + L2 LINE L2 2830 3077 -195 1834 133 44 3 chr6 54232673 54232967 -135046587 + AluSx SINE Alu 1 306 -6 450 0 0 0 chr6 54233024 54233074 -135046480 + (CA)n Simple_repeat Simple_repeat 2 51 0 1234 186 28 42 chr6 54233375 54233660 -135045894 + AluJo SINE Alu 19 299 -13 2029 122 11 0 chr6 54234526 54234812 -135044742 + AluSx SINE Alu 1 289 -23 1672 110 121 18 chr6 54234821 54235103 -135044451 + AluSx SINE Alu 1 311 -1 1223 95 0 0 chr6 54235118 54235276 -135044278 + AluSq SINE Alu 1 158 -155 1960 61 4 19 chr6 54235381 54235642 -135043912 + AluY SINE Alu 43 299 -12 1937 101 54 0 chr6 54235651 54235928 -135043626 + AluSx SINE Alu 1 292 -20 2139 125 0 0 chr6 54235943 54236240 -135043314 + AluSx SINE Alu 1 297 -15 2337 89 0 10 chr6 54236288 54236601 -135042953 + AluSg SINE Alu 1 310 0 1660 162 13 41 chr6 54236769 54237084 -135042470 - AluJo SINE Alu -6 306 1 657 260 20 20 chr6 54237234 54237434 -135042120 - MER58A DNA MER1_type -16 208 9 663 286 80 45 chr6 54237467 54237597 -135041957 + L1MC5 LINE L1 7352 7476 -485 1907 110 6 57 chr6 54237597 54237915 -135041639 + AluSx SINE Alu 1 302 -10 663 286 80 45 chr6 54237915 54237950 -135041604 + L1MC5 LINE L1 7476 7508 -453 1950 144 3 7 chr6 54237950 54238256 -135041298 - AluSx SINE Alu -1 311 7 663 286 80 45 chr6 54238256 54238425 -135041129 + L1MC5 LINE L1 7508 7699 -262 357 309 30 6 chr6 54238427 54238595 -135040959 - L1M4 LINE L1 -2376 3770 3599 278 322 62 5 chr6 54239545 54239753 -135039801 - L1M4 LINE L1 -2535 3611 3392 24 0 0 0 chr6 54239753 54239777 -135039777 + AT_rich Low_complexity Low_complexity 1 24 0 964 113 0 8 chr6 54239785 54239918 -135039636 + AluSq/x SINE Alu 1 132 -180 2032 127 0 23 chr6 54239920 54240055 -135039499 + AluSq SINE Alu 1 138 -175 1927 80 0 0 chr6 54240055 54240292 -135039262 + AluY SINE Alu 46 305 0 187 43 0 0 chr6 54240292 54240315 -135039239 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 2032 127 0 23 chr6 54240315 54240486 -135039068 + AluSq SINE Alu 138 301 -12 549 178 139 0 chr6 54240488 54240589 -135038965 - FLAM_C SINE Alu -27 116 2 272 161 18 0 chr6 54240673 54240729 -135038825 - L1MB5 LINE L1 -6 6168 6112 3168 111 12 23 chr6 54240715 54241230 -135038324 + L1MA2 LINE L1 5796 6304 0 1424 197 59 22 chr6 54241255 54241587 -135037967 - L1MB5 LINE L1 -32 6142 5795 2063 141 0 16 chr6 54241591 54241895 -135037659 - AluSx SINE Alu -13 299 1 335 194 0 0 chr6 54241897 54241959 -135037595 - MER33 DNA MER1_type -210 114 53 23 0 0 0 chr6 54241959 54241982 -135037572 + AT_rich Low_complexity Low_complexity 1 23 0 340 177 16 0 chr6 54241987 54242049 -135037505 - U7 snRNA snRNA 0 63 1 389 209 3 0 chr6 54242049 54242135 -135037419 - MER33 DNA MER1_type -259 65 1 2174 108 0 59 chr6 54242214 54242538 -135037016 - AluSx SINE Alu -7 305 1 1602 248 59 62 chr6 54242562 54242996 -135036558 + L1ME3A LINE L1 5523 5956 -214 1580 179 48 0 chr6 54242996 54243269 -135036285 + AluJb SINE Alu 1 286 -26 1602 248 59 62 chr6 54243269 54243479 -135036075 + L1ME3A LINE L1 5956 6165 -5 1946 112 30 40 chr6 54243486 54243789 -135035765 - AluSq SINE Alu -13 300 1 24 32 0 0 chr6 54244228 54244259 -135035295 + AT_rich Low_complexity Low_complexity 1 31 0 606 181 95 9 chr6 54244457 54244573 -135034981 + AluSg SINE Alu 2 127 -183 2291 92 0 3 chr6 54244679 54244985 -135034569 - AluSx SINE Alu 0 305 1 2229 123 0 3 chr6 54245237 54245546 -135034008 + AluSx SINE Alu 1 308 -4 530 242 155 0 chr6 54245717 54245878 -135033676 - MER5A DNA MER1_type 0 189 4 282 73 0 0 chr6 54248531 54248572 -135030982 + (TA)n Simple_repeat Simple_repeat 1 41 0 2101 121 10 7 chr6 54248878 54249176 -135030378 - AluSx SINE Alu -13 299 1 681 200 0 0 chr6 54249779 54249894 -135029660 - FLAM_A SINE Alu -14 128 14 233 310 0 0 chr6 54250802 54250860 -135028694 + L2 LINE L2 3215 3272 0 718 220 0 0 chr6 54250922 54251054 -135028500 + FLAM_A SINE Alu 1 132 -1 1567 190 0 35 chr6 54251333 54251643 -135027911 - AluJo SINE Alu -13 299 1 890 173 0 0 chr6 54251646 54251779 -135027775 - AluJo/FLAM SINE Alu -179 133 1 1900 104 35 4 chr6 54251904 54252164 -135027390 - AluSq SINE Alu -41 272 5 2121 138 0 0 chr6 54252169 54252465 -135027089 - AluSx SINE Alu -16 296 1 397 282 18 9 chr6 54252696 54252806 -135026748 + MIR SINE MIR 33 143 -65 1568 201 40 0 chr6 54252844 54253142 -135026412 + AluJo SINE Alu 1 310 -2 330 26 0 0 chr6 54253323 54253362 -135026192 + (CA)n Simple_repeat Simple_repeat 2 40 0 187 265 36 36 chr6 54253592 54253675 -135025879 + MIR SINE MIR 175 257 -5 2172 102 3 23 chr6 54253918 54254223 -135025331 - AluSg1 SINE Alu -10 299 1 2302 97 13 0 chr6 54254226 54254535 -135025019 - AluSq SINE Alu 0 313 1 2264 106 3 3 chr6 54254751 54255054 -135024500 - AluSp SINE Alu -10 303 1 1713 179 7 7 chr6 54256058 54256355 -135023199 + AluJo SINE Alu 5 301 -11 3507 144 24 17 chr6 54256374 54256659 -135022895 + L1MB8 LINE L1 5537 5819 -359 2198 121 3 0 chr6 54256659 54256957 -135022597 + AluSx SINE Alu 1 299 -13 2282 112 0 0 chr6 54256957 54257252 -135022302 + AluY SINE Alu 1 295 -16 3507 144 24 17 chr6 54257252 54257603 -135021951 + L1MB8 LINE L1 5818 6178 0 2411 91 3 3 chr6 54257624 54257933 -135021621 + AluSp SINE Alu 1 309 -4 2190 103 3 3 chr6 54258826 54259117 -135020437 + AluSx SINE Alu 1 291 -21 1787 150 0 14 chr6 54259644 54259930 -135019624 - AluJb SINE Alu -30 282 1 2366 112 0 0 chr6 54261185 54261490 -135018064 - AluSx SINE Alu -7 305 1 339 254 36 27 chr6 54262254 54262364 -135017190 + MER46C DNA MER2_type 19 129 -209 192 338 0 0 chr6 54262491 54262559 -135016995 + MIR SINE MIR 1 68 -194 1620 182 3 36 chr6 54262938 54263246 -135016308 - AluJo SINE Alu -14 298 1 3192 125 26 43 chr6 54263297 54263740 -135015814 - Tigger3(Golem) DNA MER2_type 0 3028 2579 2023 147 3 0 chr6 54263740 54264033 -135015521 - AluSx SINE Alu -18 294 1 3192 125 26 43 chr6 54264033 54264059 -135015495 - Tigger3(Golem) DNA MER2_type -449 2579 2554 2197 115 7 3 chr6 54264059 54264354 -135015200 + AluSp SINE Alu 1 296 -17 3192 125 26 43 chr6 54264354 54264420 -135015134 - Tigger3(Golem) DNA MER2_type -474 2554 2501 1543 207 7 10 chr6 54264425 54264715 -135014839 - AluJb SINE Alu -23 289 1 2198 131 3 0 chr6 54264727 54265033 -135014521 - AluSx SINE Alu -5 307 1 2143 114 10 0 chr6 54265100 54265397 -135014157 + AluSx SINE Alu 5 304 -8 1139 73 0 0 chr6 54265786 54265922 -135013632 + AluSq/x SINE Alu 1 136 -176 2234 108 0 3 chr6 54265922 54266232 -135013322 + AluSx SINE Alu 1 309 0 2219 108 7 10 chr6 54266338 54266645 -135012909 + AluSx SINE Alu 1 306 -6 1573 164 13 72 chr6 54267422 54267552 -135012002 + AluJb SINE Alu 1 137 -175 185 0 40 0 chr6 54267552 54267577 -135011977 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 1573 164 13 72 chr6 54267577 54267764 -135011790 + AluJb SINE Alu 137 299 -13 2465 81 3 0 chr6 54267838 54268148 -135011406 + AluY SINE Alu 1 311 0 1315 197 37 0 chr6 54268175 54268419 -135011135 + AluJb SINE Alu 35 287 -25 2379 101 3 0 chr6 54268822 54269130 -135010424 + AluSq SINE Alu 1 309 -4 2259 104 3 0 chr6 54269263 54269561 -135009993 + AluSx SINE Alu 1 299 -13 1206 154 0 0 chr6 54269612 54269781 -135009773 + AluSx SINE Alu 1 169 -143 243 0 0 0 chr6 54269815 54269842 -135009712 + (T)n Simple_repeat Simple_repeat 1 27 0 2336 92 20 0 chr6 54269848 54270153 -135009401 + AluY SINE Alu 1 311 0 1713 155 14 28 chr6 54271345 54271629 -135007925 + AluJo SINE Alu 17 296 -16 1831 186 3 0 chr6 54271887 54272188 -135007366 - AluJb SINE Alu -10 302 1 183 149 43 43 chr6 54273084 54273131 -135006423 - MIR SINE MIR -120 142 96 1659 145 13 53 chr6 54273497 54273616 -135005938 + AluJb SINE Alu 1 123 -189 180 0 0 0 chr6 54273616 54273636 -135005918 + (TA)n Simple_repeat Simple_repeat 2 21 0 2387 95 0 20 chr6 54273636 54273941 -135005613 - AluSx SINE Alu -13 299 1 1659 145 13 53 chr6 54273941 54274123 -135005431 + AluJb SINE Alu 121 291 -21 49 0 0 0 chr6 54274195 54274244 -135005310 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr6 54274295 54274316 -135005238 + AT_rich Low_complexity Low_complexity 1 21 0 331 294 79 31 chr6 54274431 54274659 -135004895 + L1MC5 LINE L1 7706 7944 -17 24 0 0 0 chr6 54275764 54275788 -135003766 + GC_rich Low_complexity Low_complexity 1 24 0 2306 50 3 72 chr6 54276685 54277006 -135002548 + AluSx SINE Alu 1 299 -13 464 188 21 111 chr6 54277560 54277614 -135001940 + MER5B DNA MER1_type 4 61 -117 2157 93 10 0 chr6 54277614 54277905 -135001649 + AluY SINE Alu 1 294 -17 464 188 21 111 chr6 54277905 54277916 -135001638 + MER5B DNA MER1_type 61 71 -107 2354 94 0 0 chr6 54277916 54278223 -135001331 + AluSq SINE Alu 1 307 -6 464 188 21 111 chr6 54278223 54278300 -135001254 + MER5B DNA MER1_type 71 134 -44 261 42 0 125 chr6 54278300 54278348 -135001206 + AluSc SINE Alu 250 291 -8 571 166 135 0 chr6 54278349 54278557 -135000997 + L1MD3 LINE L1 7657 7985 -10 348 173 50 94 chr6 54278673 54278844 -135000710 - L1ME LINE L1 -503 5618 5321 3810 161 104 58 chr6 54278858 54279698 -134999856 + MER21A LTR ERV1 1 878 -53 6912 56 14 50 chr6 54279713 54280702 -134998852 - SVA Other Other 0 1386 433 2804 79 33 81 chr6 54280715 54281359 -134998195 - SVA Other Other -518 868 393 21 36 0 0 chr6 54281409 54281437 -134998117 + GC_rich Low_complexity Low_complexity 1 28 0 1131 206 36 5 chr6 54281760 54281983 -134997571 + MER46A DNA MER2_type 7 236 0 189 0 0 0 chr6 54282339 54282360 -134997194 + (TGG)n Simple_repeat Simple_repeat 3 23 0 1136 198 27 91 chr6 54282360 54282658 -134996896 - AluJo SINE Alu -33 279 1 537 306 44 32 chr6 54283490 54283656 -134995898 - MIR SINE MIR -2 260 88 1728 158 0 51 chr6 54283656 54283967 -134995587 + AluJb SINE Alu 1 295 -17 537 306 44 32 chr6 54283967 54284052 -134995502 - MIR SINE MIR -174 88 6 4017 178 81 20 chr6 54284287 54284670 -134994884 - MER21B LTR ERV1 0 863 505 1575 162 16 59 chr6 54284670 54284973 -134994581 + AluJo SINE Alu 1 290 -22 4017 178 81 20 chr6 54284973 54285402 -134994152 - MER21B LTR ERV1 -358 505 1 2204 112 6 19 chr6 54285440 54285752 -134993802 - AluSp SINE Alu -2 311 4 1546 194 0 10 chr6 54286008 54286317 -134993237 + AluSq SINE Alu 1 306 -7 2250 97 0 20 chr6 54287559 54287859 -134991695 + AluSg SINE Alu 1 294 -16 332 105 35 0 chr6 54288159 54288216 -134991338 + CT-rich Low_complexity Low_complexity 1 59 0 2127 133 0 16 chr6 54288225 54288250 -134991304 - AluSx SINE Alu 0 312 288 216 0 0 0 chr6 54288250 54288274 -134991280 + (CATTT)n Simple_repeat Simple_repeat 3 26 0 2127 133 0 16 chr6 54288274 54288565 -134990989 - AluSx SINE Alu -24 288 1 2552 53 0 3 chr6 54288646 54288950 -134990604 - AluY SINE Alu -8 303 1 593 293 41 38 chr6 54289134 54289424 -134990130 - L1MC/D LINE L1 -2252 5556 5266 1328 128 0 103 chr6 54289450 54289684 -134989870 - AluJo SINE Alu -16 296 87 2171 126 0 7 chr6 54289889 54290190 -134989364 + AluSg1 SINE Alu 1 299 -10 625 109 20 20 chr6 54290262 54290363 -134989191 - AluSg/x SINE Alu 0 309 209 2441 97 0 3 chr6 54290453 54290763 -134988791 + AluSx SINE Alu 1 309 -3 536 88 0 12 chr6 54290685 54290765 -134988789 + Alu SINE Alu 233 311 -1 1865 140 4 0 chr6 54291165 54291429 -134988125 - AluSx SINE Alu -47 265 1 25 0 0 0 chr6 54291431 54291456 -134988098 + AT_rich Low_complexity Low_complexity 1 25 0 2227 61 0 32 chr6 54292212 54292525 -134987029 - AluY SINE Alu -8 303 1 703 176 0 25 chr6 54292710 54292829 -134986725 - FLAM_C SINE Alu -26 117 2 542 254 17 0 chr6 54292855 54292973 -134986581 - FLAM_A SINE Alu -13 120 1 22 35 0 0 chr6 54292990 54293019 -134986535 + AT_rich Low_complexity Low_complexity 1 29 0 1317 201 67 67 chr6 54293020 54293410 -134986144 + L1M4 LINE L1 4502 4894 -1252 2198 123 0 0 chr6 54293410 54293718 -134985836 + AluSc SINE Alu 1 308 -1 1317 201 67 67 chr6 54293718 54293731 -134985823 + L1M4 LINE L1 4893 4905 -1241 584 261 110 60 chr6 54294202 54294251 -134985303 - MIR SINE MIR -31 231 186 1702 107 118 0 chr6 54294251 54294523 -134985031 + AluSx SINE Alu 1 304 -8 584 261 110 60 chr6 54294523 54294691 -134984863 - MIR SINE MIR -76 186 3 1145 144 8 116 chr6 54294697 54294947 -134984607 + AluJb SINE Alu 1 223 -89 183 100 0 0 chr6 54294963 54294993 -134984561 + (T)n Simple_repeat Simple_repeat 1 30 0 1743 88 0 25 chr6 54295007 54295245 -134984309 - AluSg SINE Alu -78 232 1 1683 118 20 104 chr6 54295276 54295623 -134983931 + AluYb8 SINE Alu 1 318 0 466 164 0 0 chr6 54295768 54295841 -134983713 + AluS SINE Alu 223 295 -16 2406 72 0 0 chr6 54296013 54296317 -134983237 + AluY SINE Alu 2 305 -6 2212 98 3 0 chr6 54296920 54297225 -134982329 - AluSx SINE Alu -6 306 1 24 0 0 0 chr6 54297452 54297476 -134982078 + AT_rich Low_complexity Low_complexity 1 24 0 1235 188 47 0 chr6 54297774 54298029 -134981525 + AluJb SINE Alu 34 300 -12 1799 141 6 31 chr6 54298155 54298475 -134981079 + AluSx SINE Alu 1 312 0 1022 154 5 82 chr6 54298477 54298697 -134980857 - MER2 DNA MER2_type -140 205 3 2370 82 0 0 chr6 54298793 54299099 -134980455 - AluSx SINE Alu -6 306 1 69 24 0 0 chr6 54299555 54299638 -134979916 + AT_rich Low_complexity Low_complexity 1 83 0 2245 100 3 0 chr6 54299687 54299988 -134979566 + AluSp SINE Alu 1 302 -11 1584 114 41 4 chr6 54299996 54300241 -134979313 + AluSc SINE Alu 39 292 -17 2146 125 0 0 chr6 54301064 54301376 -134978178 - AluSq SINE Alu -1 312 1 846 163 0 7 chr6 54301451 54301586 -134977968 + AluJo SINE Alu 1 134 -178 2290 93 3 0 chr6 54301587 54301897 -134977657 + AluSq SINE Alu 1 311 -2 1960 133 3 0 chr6 54302485 54302778 -134976776 - AluSx SINE Alu -18 294 1 1860 141 10 13 chr6 54302806 54302982 -134976572 - AluJo SINE Alu -7 305 129 1471 163 4 16 chr6 54302982 54303240 -134976314 - AluJb SINE Alu -57 255 1 1860 141 10 13 chr6 54303240 54303369 -134976185 - AluJo SINE Alu -183 129 1 1432 139 4 4 chr6 54305250 54305487 -134974067 - AluJo SINE Alu -2 310 74 1983 120 3 29 chr6 54305518 54305834 -134973720 - AluSq SINE Alu -5 308 1 899 251 82 19 chr6 54305860 54306175 -134973379 - L1MA9 LINE L1 -38 6274 5940 2127 123 0 0 chr6 54306237 54306538 -134973016 - AluSx SINE Alu -10 302 2 3880 136 100 53 chr6 54306551 54306896 -134972658 - L1MB8 LINE L1 0 6178 5851 2164 114 0 0 chr6 54306896 54307203 -134972351 - AluSc SINE Alu -2 307 1 3880 136 100 53 chr6 54307203 54307674 -134971880 - L1MB8 LINE L1 -327 5851 5299 2011 92 55 0 chr6 54307674 54307966 -134971588 + AluSq SINE Alu 1 308 -5 3880 136 100 53 chr6 54307966 54308100 -134971454 - L1MB8 LINE L1 -879 5299 5173 707 209 11 62 chr6 54308326 54308503 -134971051 - FRAM SINE Alu -8 168 1 904 296 97 24 chr6 54308583 54309136 -134970418 + L2 LINE L2 2699 3292 -21 2201 103 0 10 chr6 54309864 54310175 -134969379 - AluSx SINE Alu -4 308 1 574 70 0 0 chr6 54310756 54310827 -134968727 + AluS SINE Alu 2 72 -241 2200 95 0 0 chr6 54311584 54311906 -134967648 + AluSq SINE Alu 1 322 0 2400 70 0 0 chr6 54312157 54312457 -134967097 - AluSq SINE Alu -13 300 1 2217 84 7 0 chr6 54312611 54312908 -134966646 - AluSg SINE Alu -11 299 1 250 231 137 13 chr6 54313191 54313308 -134966246 + MER5A DNA MER1_type 2 189 0 246 220 34 0 chr6 54314500 54314559 -134964995 + tRNA-Leu-CTG tRNA tRNA 23 83 -3 248 260 211 22 chr6 54314610 54314769 -134964785 + MIR3 SINE MIR 3 187 -62 1821 144 14 0 chr6 54314796 54315087 -134964467 + AluSx SINE Alu 1 295 -17 1960 108 30 10 chr6 54315091 54315386 -134964168 + AluSg SINE Alu 1 301 -9 750 200 12 6 chr6 54315484 54315644 -134963910 - FRAM SINE Alu -2 164 4 2277 165 34 3 chr6 54315649 54316036 -134963518 + MER21A LTR ERV1 533 931 0 628 306 44 32 chr6 54316266 54316351 -134963203 + MIR SINE MIR 6 88 -174 1619 161 0 51 chr6 54316351 54316662 -134962892 - AluJb SINE Alu -17 295 1 628 306 44 32 chr6 54316662 54316828 -134962726 + MIR SINE MIR 88 260 -2 1036 198 27 91 chr6 54317660 54317958 -134961596 + AluJo SINE Alu 1 279 -33 189 0 0 0 chr6 54317958 54317979 -134961575 + (CCA)n Simple_repeat Simple_repeat 3 23 0 1118 206 36 5 chr6 54318335 54318558 -134960996 - MER46A DNA MER2_type 0 236 7 21 36 0 0 chr6 54318881 54318909 -134960645 + GC_rich Low_complexity Low_complexity 1 28 0 2593 79 33 81 chr6 54318959 54319603 -134959951 + SVA Other Other 393 868 -592 6472 56 15 50 chr6 54319616 54320604 -134958950 + SVA Other Other 433 1386 0 3828 162 104 58 chr6 54320619 54321459 -134958095 - MER21A LTR ERV1 -53 878 1 344 173 50 94 chr6 54321473 54321644 -134957910 + L1ME LINE L1 5321 5618 -503 558 166 135 0 chr6 54321760 54321968 -134957586 - L1MD3 LINE L1 -10 7985 7657 261 42 0 125 chr6 54321969 54322017 -134957537 - AluSc SINE Alu -8 291 250 517 188 21 111 chr6 54322017 54322094 -134957460 - MER5B DNA MER1_type -44 134 52 2232 94 0 0 chr6 54322094 54322401 -134957153 - AluSq SINE Alu -6 307 1 517 188 21 111 chr6 54322401 54322412 -134957142 - MER5B DNA MER1_type -126 52 42 2037 93 10 0 chr6 54322412 54322703 -134956851 - AluY SINE Alu -17 294 1 517 188 21 111 chr6 54322703 54322757 -134956797 - MER5B DNA MER1_type -136 42 4 2176 50 3 72 chr6 54323311 54323632 -134955922 - AluSx SINE Alu -13 299 1 24 0 0 0 chr6 54324529 54324553 -134955001 + GC_rich Low_complexity Low_complexity 1 24 0 332 294 79 31 chr6 54325658 54325886 -134953668 - L1MC5 LINE L1 -17 7944 7706 21 0 0 0 chr6 54326001 54326022 -134953532 + AT_rich Low_complexity Low_complexity 1 21 0 49 0 0 0 chr6 54326073 54326122 -134953432 + AT_rich Low_complexity Low_complexity 1 49 0 1539 145 13 53 chr6 54326194 54326376 -134953178 - AluJb SINE Alu -21 291 103 2254 95 0 20 chr6 54326376 54326681 -134952873 + AluSx SINE Alu 1 299 -13 180 0 0 0 chr6 54326681 54326701 -134952853 + (TA)n Simple_repeat Simple_repeat 2 21 0 1539 145 13 53 chr6 54326701 54326820 -134952734 - AluJb SINE Alu -207 105 1 207 185 62 46 chr6 54327186 54327251 -134952303 + MIR SINE MIR 96 161 -101 180 263 0 0 chr6 54327270 54327308 -134952246 - L2 LINE L2 -7 3306 3269 1723 186 3 0 chr6 54328129 54328430 -134951124 + AluJb SINE Alu 1 302 -10 1604 155 14 28 chr6 54328688 54328972 -134950582 - AluJo SINE Alu -16 296 17 2213 92 20 0 chr6 54330163 54330468 -134949086 - AluY SINE Alu 0 311 1 252 0 0 0 chr6 54330474 54330502 -134949052 + (A)n Simple_repeat Simple_repeat 1 28 0 1132 154 0 0 chr6 54330536 54330705 -134948849 - AluSx SINE Alu -143 169 1 2132 104 3 0 chr6 54330756 54331054 -134948500 - AluSx SINE Alu -13 299 1 2275 97 3 0 chr6 54331187 54331495 -134948059 - AluSq SINE Alu -4 309 1 1225 198 36 0 chr6 54331895 54332142 -134947412 - AluJb SINE Alu -22 290 35 2335 81 3 0 chr6 54332169 54332479 -134947075 - AluY SINE Alu 0 311 1 1462 163 12 72 chr6 54332553 54332741 -134946813 - AluJb SINE Alu -12 300 137 185 0 40 0 chr6 54332741 54332766 -134946788 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1462 163 12 72 chr6 54332766 54332896 -134946658 - AluJb SINE Alu -175 137 1 2097 114 7 3 chr6 54333673 54333980 -134945574 - AluSx SINE Alu -4 308 1 2103 108 0 3 chr6 54334086 54334396 -134945158 - AluSx SINE Alu 0 309 1 1077 73 0 0 chr6 54334396 54334532 -134945022 - AluSq/x SINE Alu -176 136 1 2015 115 10 0 chr6 54334921 54335217 -134944337 - AluSx SINE Alu -9 303 5 828 122 16 0 chr6 54335284 54335407 -134944147 + AluSq/x SINE Alu 1 125 -188 1105 133 0 6 chr6 54336208 54336373 -134943181 - AluSc SINE Alu -145 164 1 2286 34 41 14 chr6 54336408 54336703 -134942851 + AluY SINE Alu 1 303 -8 1768 137 23 7 chr6 54336713 54337013 -134942541 + AluSg SINE Alu 1 305 -5 1903 123 14 0 chr6 54337310 54337594 -134941960 + AluSx SINE Alu 2 289 -23 340 234 75 11 chr6 54337628 54337722 -134941832 + MER5A DNA MER1_type 13 112 -77 1836 140 10 3 chr6 54337746 54338038 -134941516 + AluSx SINE Alu 1 294 -18 2027 85 35 0 chr6 54338049 54338331 -134941223 + AluSc SINE Alu 1 292 -17 2099 105 7 0 chr6 54338567 54338853 -134940701 - AluSc SINE Alu -21 288 1 2048 105 3 0 chr6 54339042 54339327 -134940227 - AluSx SINE Alu -21 291 6 21 0 0 0 chr6 54339342 54339363 -134940191 + AT_rich Low_complexity Low_complexity 1 21 0 1459 182 43 10 chr6 54339496 54339798 -134939756 + AluJb SINE Alu 1 312 0 194 250 104 0 chr6 54339870 54339918 -134939636 + L2 LINE L2 3261 3313 0 282 125 0 0 chr6 54340924 54340972 -134938582 + (TA)n Simple_repeat Simple_repeat 2 49 0 2009 106 7 3 chr6 54343512 54343820 -134935734 + AluSx SINE Alu 1 309 0 534 93 4 1 chr6 54347034 54347262 -134932292 + AluSp SINE Alu 52 313 0 732 148 126 93 chr6 54348370 54348485 -134931069 + MER5A DNA MER1_type 1 127 -62 2055 78 18 7 chr6 54348485 54348800 -134930754 + AluSq SINE Alu 1 318 0 732 148 126 93 chr6 54348800 54348866 -134930688 + MER5A DNA MER1_type 127 189 0 315 0 0 0 chr6 54348874 54348909 -134930645 + (TG)n Simple_repeat Simple_repeat 2 36 0 186 43 0 0 chr6 54349606 54349629 -134929925 + (CCG)n Simple_repeat Simple_repeat 2 24 0 2211 80 0 10 chr6 54350861 54351163 -134928391 + AluSx SINE Alu 1 299 -13 1219 145 0 0 chr6 54351163 54351342 -134928212 + AluSg/x SINE Alu 132 310 0 904 187 0 6 chr6 54351880 54352051 -134927503 - AluJb SINE Alu -5 307 138 2138 114 7 0 chr6 54352078 54352377 -134927177 - AluSp SINE Alu -12 301 1 184 245 0 0 chr6 54352416 54352465 -134927089 + L2 LINE L2 1986 2034 -1280 185 0 0 39 chr6 54352465 54352491 -134927063 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 723 212 0 0 chr6 54352492 54352610 -134926944 - FLAM_C SINE Alu -24 119 2 969 169 6 0 chr6 54352622 54352794 -134926760 - AluJb SINE Alu -19 293 121 189 247 158 63 chr6 54352796 54352986 -134926568 + L2 LINE L2 2043 2250 -1064 1221 165 8 43 chr6 54353113 54353368 -134926186 - AluJo SINE Alu 0 312 67 790 293 26 60 chr6 54353377 54353455 -134926099 + L2 LINE L2 2396 2475 -839 2347 97 0 0 chr6 54353455 54353764 -134925790 - AluSg SINE Alu -1 309 1 790 293 26 60 chr6 54353764 54354153 -134925401 + L2 LINE L2 2475 2847 -467 401 316 89 55 chr6 54354222 54354513 -134925041 + L2 LINE L2 2972 3272 0 1329 87 0 0 chr6 54355789 54355962 -134923592 - AluSg/x SINE Alu -18 292 120 2162 105 0 7 chr6 54355968 54356272 -134923282 - AluSq SINE Alu -11 302 1 366 252 131 52 chr6 54356272 54356319 -134923235 - HAL1 LINE L1 -1461 1046 1004 2114 106 0 55 chr6 54356319 54356498 -134923056 - AluSx SINE Alu 0 312 125 2170 111 0 0 chr6 54356498 54356804 -134922750 - AluSx SINE Alu -6 306 1 2063 98 10 10 chr6 54356806 54357103 -134922451 - AluSx SINE Alu -15 297 1 2114 106 0 55 chr6 54357103 54357250 -134922304 - AluSx SINE Alu -188 124 1 366 252 131 52 chr6 54357250 54357420 -134922134 - HAL1 LINE L1 -1503 1004 798 2494 56 0 0 chr6 54357420 54357722 -134921832 + AluY SINE Alu 1 302 -9 366 252 131 52 chr6 54357722 54357793 -134921761 - HAL1 LINE L1 -1709 798 734 288 265 68 114 chr6 54357838 54358041 -134921513 - HAL1 LINE L1 -2112 395 219 2356 89 0 0 chr6 54358041 54358344 -134921210 - AluY SINE Alu -8 303 1 288 265 68 114 chr6 54358344 54358552 -134921002 - HAL1 LINE L1 -2288 219 3 21 57 0 0 chr6 54359816 54359851 -134919703 + AT_rich Low_complexity Low_complexity 1 35 0 2243 113 3 0 chr6 54359935 54360244 -134919310 - AluSx SINE Alu -2 310 1 223 350 21 21 chr6 54360292 54360389 -134919165 - MIR SINE MIR -89 119 23 2009 87 17 17 chr6 54360720 54360844 -134918710 + AluSx SINE Alu 11 134 -178 2156 113 3 3 chr6 54360844 54361153 -134918401 + AluSg SINE Alu 1 309 -1 2009 87 17 17 chr6 54361153 54361316 -134918238 + AluSx SINE Alu 133 298 -14 299 250 231 0 chr6 54361392 54361500 -134918054 - MIR SINE MIR -40 222 90 1875 192 40 22 chr6 54361736 54362185 -134917369 - LTR2B LTR ERV1 0 490 1 1400 108 20 0 chr6 54362406 54362610 -134916944 - AluSg/x SINE Alu -24 286 79 1799 142 7 7 chr6 54362641 54362923 -134916631 + AluJb SINE Alu 3 284 -28 2044 99 0 84 chr6 54364856 54365031 -134914523 - AluSx SINE Alu -8 304 116 207 0 0 0 chr6 54365031 54365054 -134914500 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2126 44 33 11 chr6 54365056 54365329 -134914225 - AluY SINE Alu -31 280 2 2044 99 0 84 chr6 54365329 54365482 -134914072 - AluSx SINE Alu -197 115 1 212 196 176 0 chr6 54365482 54365533 -134914021 - L3 LINE CR1 -109 1468 1409 1058 137 33 47 chr6 54365535 54365586 -134913968 + AluJo SINE Alu 85 135 -177 2099 102 23 0 chr6 54365586 54365890 -134913664 + AluY SINE Alu 1 311 0 1058 137 33 47 chr6 54365890 54366075 -134913479 + AluJo SINE Alu 135 312 0 242 377 143 8 chr6 54366305 54366663 -134912891 - L2 LINE L2 -682 2632 2227 1376 237 104 53 chr6 54366663 54366893 -134912661 - L2 LINE L2 -1 3312 3095 2210 97 3 0 chr6 54366893 54367192 -134912362 + AluSp SINE Alu 1 300 -13 1376 237 104 53 chr6 54367192 54367811 -134911743 - L2 LINE L2 -218 3095 2414 225 272 22 11 chr6 54367851 54367943 -134911611 - L2 LINE L2 -1410 1904 1812 1990 100 50 7 chr6 54368082 54368382 -134911172 - AluSq SINE Alu 0 313 1 1946 108 36 0 chr6 54368841 54369119 -134910435 - AluSx SINE Alu -24 288 1 2385 84 3 0 chr6 54369530 54369839 -134909715 + AluY SINE Alu 1 310 -1 757 177 0 8 chr6 54369864 54369988 -134909566 - FLAM_A SINE Alu -8 134 12 384 248 106 50 chr6 54370033 54370194 -134909360 - MIR SINE MIR -15 247 78 2254 101 3 0 chr6 54370442 54370748 -134908806 - AluSq SINE Alu 0 313 7 258 243 86 0 chr6 54370821 54370891 -134908663 + MER5A DNA MER1_type 9 84 -105 2475 63 0 0 chr6 54370930 54371233 -134908321 + AluY SINE Alu 1 303 -8 602 264 43 81 chr6 54371234 54371332 -134908222 - L1MC4a LINE L1 -1892 5916 5816 2243 95 0 0 chr6 54371332 54371627 -134907927 - AluSx SINE Alu -13 299 5 602 264 43 81 chr6 54371627 54371717 -134907837 - L1MC4a LINE L1 -1992 5816 5724 1928 143 3 7 chr6 54371717 54372025 -134907529 - AluJo SINE Alu -5 307 1 602 264 43 81 chr6 54372025 54372075 -134907479 - L1MC4a LINE L1 -2084 5724 5674 2254 77 13 3 chr6 54372075 54372373 -134907181 + AluSg SINE Alu 1 301 -9 602 264 43 81 chr6 54372373 54372454 -134907100 - L1MC4a LINE L1 -2134 5674 5607 2237 90 3 0 chr6 54372607 54372897 -134906657 - AluSp SINE Alu -22 291 1 240 211 63 74 chr6 54372898 54372993 -134906561 + MIR SINE MIR 114 207 -55 653 245 57 15 chr6 54373212 54373313 -134906241 + L1ME4a LINE L1 5842 5937 -184 1739 155 7 45 chr6 54373313 54373446 -134906108 + AluJb SINE Alu 1 138 -174 2111 138 0 0 chr6 54373446 54373758 -134905796 + AluSx SINE Alu 1 312 0 1739 155 7 45 chr6 54373758 54373933 -134905621 + AluJb SINE Alu 138 297 -15 653 245 57 15 chr6 54373933 54374096 -134905458 + L1ME4a LINE L1 5937 6117 -4 592 89 20 20 chr6 54374894 54374995 -134904559 + (TTCC)n Simple_repeat Simple_repeat 1 101 0 2111 112 7 0 chr6 54374996 54375291 -134904263 - AluSq SINE Alu -16 297 1 593 188 153 40 chr6 54376232 54376434 -134903120 - MIR SINE MIR 0 262 38 730 240 21 6 chr6 54376558 54376742 -134902812 + MIR SINE MIR 5 190 -40 541 182 0 0 chr6 54376744 54376832 -134902722 + 5S rRNA rRNA 3 90 -31 316 156 0 31 chr6 54376832 54376896 -134902658 + MIR SINE MIR 183 244 -18 2266 102 0 6 chr6 54376913 54377227 -134902327 + AluSx SINE Alu 1 312 0 1198 152 110 0 chr6 54377238 54377475 -134902079 - Tigger1 DNA MER2_type -4 2414 2152 1961 85 7 22 chr6 54377475 54377747 -134901807 - AluY SINE Alu -41 270 3 1087 104 0 0 chr6 54377748 54377892 -134901662 - AluSc SINE Alu -165 144 1 1617 76 0 17 chr6 54377892 54378129 -134901425 - Tigger1 DNA MER2_type -506 1912 1680 1134 126 0 58 chr6 54378129 54378292 -134901262 - AluSq SINE Alu -14 299 147 2390 54 0 0 chr6 54378292 54378587 -134900967 - AluY SINE Alu -16 295 1 1134 126 0 58 chr6 54378587 54378614 -134900940 - AluSq SINE Alu -166 147 120 2013 118 3 13 chr6 54378627 54378940 -134900614 - AluSx SINE Alu -2 310 1 2018 133 10 0 chr6 54378945 54379246 -134900308 - AluSx SINE Alu -8 304 1 9764 99 25 77 chr6 54379246 54379355 -134900199 - Tigger1 DNA MER2_type -728 1690 1577 2051 124 0 0 chr6 54379355 54379668 -134899886 - AluY SINE Alu 0 311 1 9764 99 25 77 chr6 54379668 54380284 -134899270 - Tigger1 DNA MER2_type -841 1577 931 2378 93 0 0 chr6 54380284 54380594 -134898960 + AluSx SINE Alu 1 310 -2 9764 99 25 77 chr6 54380594 54380810 -134898744 - Tigger1 DNA MER2_type -1487 931 705 1561 179 33 0 chr6 54380810 54381084 -134898470 - AluJo SINE Alu -29 283 1 9764 99 25 77 chr6 54381084 54381272 -134898282 - Tigger1 DNA MER2_type -1713 705 509 2457 57 0 3 chr6 54381272 54381572 -134897982 - AluY SINE Alu -12 299 1 9764 99 25 77 chr6 54381572 54381699 -134897855 - Tigger1 DNA MER2_type -1909 509 377 1559 178 26 30 chr6 54381699 54382003 -134897551 - AluJo SINE Alu -9 303 1 9764 99 25 77 chr6 54382003 54382118 -134897436 - Tigger1 DNA MER2_type -2041 377 258 2122 134 0 0 chr6 54382118 54382424 -134897130 - AluSx SINE Alu -6 306 1 9764 99 25 77 chr6 54382424 54382653 -134896901 - Tigger1 DNA MER2_type -2160 258 181 2023 128 10 0 chr6 54382653 54382950 -134896604 + AluSx SINE Alu 1 300 -12 9764 99 25 77 chr6 54382950 54383101 -134896453 - Tigger1 DNA MER2_type -2237 181 24 225 0 0 0 chr6 54383109 54383134 -134896420 + (ATG)n Simple_repeat Simple_repeat 2 26 0 967 151 35 12 chr6 54383149 54383321 -134896233 - AluSg/x SINE Alu -19 291 116 529 252 50 17 chr6 54384263 54384382 -134895172 + FRAM SINE Alu 1 123 -53 1981 133 0 31 chr6 54384709 54385031 -134894523 - AluJb SINE Alu 0 312 1 1687 103 17 0 chr6 54385717 54385949 -134893605 - AluSx SINE Alu -76 236 1 1904 150 3 3 chr6 54389225 54389525 -134890029 + AluJo SINE Alu 1 300 -12 2173 87 0 0 chr6 54391892 54392178 -134887376 - AluSx SINE Alu -11 301 16 231 130 43 0 chr6 54393241 54393287 -134886267 - MADE1 DNA Mariner -32 48 1 402 267 69 0 chr6 54393604 54393720 -134885834 + MER91C DNA MER1_type 4 127 -13 1832 151 31 20 chr6 54394764 54395056 -134884498 - AluJb SINE Alu -17 295 1 401 74 0 0 chr6 54395523 54395577 -134883977 + FLAM SINE Alu 59 112 -21 876 227 52 32 chr6 54396513 54396764 -134882790 + MIR SINE MIR 7 262 0 374 181 96 0 chr6 54397021 54397104 -134882450 - MER5B DNA MER1_type 0 178 88 500 92 0 13 chr6 54397213 54397289 -134882265 + MER5B DNA MER1_type 104 178 0 1098 157 73 0 chr6 54398038 54398242 -134881312 + MER20 DNA MER1_type 1 219 0 311 299 71 24 chr6 54398777 54398904 -134880650 - MIR SINE MIR -6 256 124 1795 170 19 16 chr6 54400925 54401236 -134878318 + AluJb SINE Alu 1 312 0 186 263 95 42 chr6 54402650 54402745 -134876809 - L2 LINE L2 -11 3261 3162 442 196 122 9 chr6 54402929 54403055 -134876499 + FLAM_A SINE Alu 19 142 0 27 49 0 0 chr6 54403744 54403785 -134875769 + AT_rich Low_complexity Low_complexity 1 41 0 495 308 36 25 chr6 54403975 54404184 -134875370 + MIR SINE MIR 35 245 -17 1087 147 78 5 chr6 54404268 54404472 -134875082 - MER20 DNA MER1_type 0 219 1 672 200 0 30 chr6 54404873 54405008 -134874546 - FLAM_C SINE Alu -1 132 2 273 330 117 15 chr6 54405332 54405596 -134873958 + L2 LINE L2 1725 2015 -1299 631 330 118 21 chr6 54407131 54407513 -134872041 + L2 LINE L2 2854 3272 0 2328 82 7 0 chr6 54407583 54407899 -134871655 + AluSq SINE Alu 1 318 0 244 181 143 9 chr6 54408717 54408822 -134870732 - L1ME4a LINE L1 -11 6110 5992 2284 104 16 10 chr6 54408994 54409303 -134870251 + AluSx SINE Alu 1 311 -1 725 233 44 40 chr6 54409313 54409764 -134869790 - L1ME3A LINE L1 -32 6138 5567 1950 169 0 3 chr6 54409781 54410076 -134869478 - AluJb SINE Alu -18 294 1 854 219 20 161 chr6 54410088 54410313 -134869241 - L1ME3A LINE L1 -578 5592 5337 2078 134 0 0 chr6 54410313 54410631 -134868923 - AluSx SINE Alu 0 318 1 854 219 20 161 chr6 54410631 54410744 -134868810 - L1ME3A LINE L1 -833 5337 5332 1540 196 6 52 chr6 54410744 54410923 -134868631 - AluJb SINE Alu 0 312 153 2325 104 0 3 chr6 54410923 54411222 -134868332 - AluSx SINE Alu -14 298 1 1540 196 6 52 chr6 54411222 54411369 -134868185 - AluJb SINE Alu -159 153 1 854 219 20 161 chr6 54411369 54411574 -134867980 - L1ME3A LINE L1 -838 5332 5100 1870 156 10 27 chr6 54411592 54411893 -134867661 + AluJb SINE Alu 1 296 -16 684 248 0 6 chr6 54411900 54412061 -134867493 + FRAM SINE Alu 13 172 -4 459 253 24 24 chr6 54412074 54412240 -134867314 - L1ME3A LINE L1 -1072 5074 4909 1318 116 0 0 chr6 54412253 54412425 -134867129 - AluSq SINE Alu -10 303 132 447 19 0 0 chr6 54412518 54412570 -134866984 + (CA)n Simple_repeat Simple_repeat 1 52 0 198 0 0 0 chr6 54412569 54412591 -134866963 + (TA)n Simple_repeat Simple_repeat 2 23 0 * 967 161 0 0 chr6 54412596 54412739 -134866815 - AluJb SINE Alu -14 298 156 2442 90 0 0 chr6 54412823 54413122 -134866432 - AluSq SINE Alu -14 299 1 2370 89 0 25 chr6 54413150 54413466 -134866088 - AluSx SINE Alu -4 308 1 643 228 55 0 chr6 54415814 54415959 -134863595 + FRAM SINE Alu 2 154 -12 22 0 0 0 chr6 54415959 54415981 -134863573 + AT_rich Low_complexity Low_complexity 1 22 0 2239 134 0 0 chr6 54415988 54416286 -134863268 + AluSx SINE Alu 1 298 -14 206 167 0 0 chr6 54416360 54416402 -134863152 + MIR SINE MIR 98 140 -68 2318 107 0 7 chr6 54416675 54416975 -134862579 - AluSg SINE Alu -12 298 1 218 0 94 0 chr6 54417220 54417252 -134862302 + T-rich Low_complexity Low_complexity 5 39 0 285 75 0 0 chr6 54417519 54417559 -134861995 + (TG)n Simple_repeat Simple_repeat 1 40 0 253 291 38 0 chr6 54418241 54418320 -134861234 - MIR SINE MIR -147 115 34 202 307 10 40 chr6 54418463 54418564 -134860990 + G-rich Low_complexity Low_complexity 1 98 0 2154 136 65 63 chr6 54419159 54419197 -134860357 - L1MB3 LINE L1 -7 6176 6140 2339 102 0 3 chr6 54419197 54419492 -134860062 - AluSp SINE Alu -19 294 1 2154 136 65 63 chr6 54419492 54419545 -134860009 - L1MB3 LINE L1 -43 6140 6089 2246 87 3 14 chr6 54419545 54419681 -134859873 + AluSx SINE Alu 1 137 -180 2247 113 0 0 chr6 54419681 54419973 -134859581 + AluSc SINE Alu 1 292 -17 2246 87 3 14 chr6 54419973 54420156 -134859398 + AluSx SINE Alu 137 317 0 2154 136 65 63 chr6 54420156 54420430 -134859124 - L1MB3 LINE L1 -94 6089 5805 2031 129 7 16 chr6 54420430 54420733 -134858821 - AluJb SINE Alu -12 300 1 2154 136 65 63 chr6 54420733 54420856 -134858698 - L1MB3 LINE L1 -378 5805 5684 481 226 159 6 chr6 54420890 54421070 -134858484 - MIR SINE MIR -14 248 41 584 211 33 67 chr6 54421249 54421429 -134858125 + MER5B DNA MER1_type 5 178 0 402 69 0 0 chr6 54421610 54421668 -134857886 + (TG)n Simple_repeat Simple_repeat 2 59 0 629 257 11 17 chr6 54422366 54422541 -134857013 - MER5B DNA MER1_type -3 175 2 800 201 6 6 chr6 54422600 54422764 -134856790 + MIR SINE MIR 99 262 0 186 245 38 38 chr6 54422863 54422916 -134856638 - L2 LINE L2 -15 3257 3205 196 321 83 24 chr6 54422948 54423032 -134856522 - L2 LINE L2 -60 3212 3124 2576 75 0 0 chr6 54423388 54423696 -134855858 - AluSg SINE Alu -2 308 1 2334 112 0 13 chr6 54423998 54424312 -134855242 - AluSx SINE Alu -2 310 1 414 123 0 0 chr6 54424442 54424507 -134855047 + Alu SINE Alu 240 304 -8 840 146 174 0 chr6 54424619 54424763 -134854791 - AluSc SINE Alu -10 299 131 338 224 0 0 chr6 54425692 54425759 -134853795 - L1MC/D LINE L1 -1991 5817 5751 235 236 18 0 chr6 54426134 54426189 -134853365 - MIR3 SINE MIR -11 197 142 395 263 273 25 chr6 54426196 54426394 -134853160 - MIR SINE MIR 0 262 16 248 229 217 0 chr6 54426404 54426487 -134853067 - MIR SINE MIR -59 149 49 2421 90 0 0 chr6 54427188 54427488 -134852066 - AluSq SINE Alu -10 303 4 279 0 0 0 chr6 54427489 54427520 -134852034 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1910 127 4 0 chr6 54427520 54427780 -134851774 - AluSx SINE Alu -27 285 25 205 273 36 0 chr6 54427891 54427946 -134851608 + L2 LINE L2 3216 3272 0 243 188 0 0 chr6 54428027 54428075 -134851479 + CT-rich Low_complexity Low_complexity 3 50 0 690 156 15 7 chr6 54428119 54428254 -134851300 - L1MB8 LINE L1 -1 6177 6042 193 377 50 19 chr6 54428275 54428434 -134851120 + L2 LINE L2 1654 1817 -1497 471 239 163 16 chr6 54428463 54428647 -134850907 - MIR SINE MIR -29 233 23 2389 100 0 3 chr6 54429076 54429376 -134850178 - AluSq SINE Alu -14 299 1 269 218 13 0 chr6 54429444 54429522 -134850032 + GA-rich Low_complexity Low_complexity 3 81 0 245 369 69 15 chr6 54429704 54429834 -134849720 + L2 LINE L2 3136 3272 0 1820 244 95 23 chr6 54429886 54430870 -134848684 - L2 LINE L2 -2 3311 2268 291 279 79 36 chr6 54430982 54431043 -134848511 + MIR SINE MIR 112 169 -93 408 20 0 0 chr6 54431043 54431092 -134848462 + (TG)n Simple_repeat Simple_repeat 2 50 0 291 279 79 36 chr6 54431092 54431115 -134848439 + MIR SINE MIR 169 190 -72 2045 139 4 0 chr6 54431115 54431438 -134848116 + AluSx SINE Alu 1 324 0 291 279 79 36 chr6 54431438 54431491 -134848063 + MIR SINE MIR 190 257 -5 2286 114 0 13 chr6 54431959 54432095 -134847459 + AluSq SINE Alu 1 137 -176 2870 13 3 0 chr6 54432095 54432401 -134847153 + AluYb8 SINE Alu 1 307 -11 2286 114 0 13 chr6 54432401 54432571 -134846983 + AluSq SINE Alu 137 303 -10 963 147 12 47 chr6 54432571 54432741 -134846813 + AluJb SINE Alu 137 300 -12 387 369 28 6 chr6 54433237 54433413 -134846141 - MIR SINE MIR -77 185 6 588 306 134 5 chr6 54434092 54434301 -134845253 + MIR SINE MIR 2 237 -25 433 306 64 17 chr6 54434346 54434519 -134845035 - MIR SINE MIR -73 189 9 285 98 0 0 chr6 54434526 54434567 -134844987 + (TG)n Simple_repeat Simple_repeat 2 42 0 989 179 191 60 chr6 54435467 54435880 -134843674 + MLT1C LTR MaLR 1 467 0 233 272 193 0 chr6 54435962 54436076 -134843478 - MIR SINE MIR 0 262 127 247 161 0 69 chr6 54436447 54436534 -134843020 + (CACCAT)n Simple_repeat Simple_repeat 3 83 0 755 318 16 12 chr6 54437880 54438125 -134841429 - MIR SINE MIR 0 262 17 362 247 78 54 chr6 54438210 54438376 -134841178 + MIR3 SINE MIR 21 190 -18 433 212 80 0 chr6 54438846 54438959 -134840595 - L2 LINE L2 -5 3267 3146 399 309 76 67 chr6 54439522 54439680 -134839874 - L2 LINE L2 0 3313 3158 2426 90 0 3 chr6 54439680 54439980 -134839574 + AluSg SINE Alu 1 299 -11 399 309 76 67 chr6 54439980 54440135 -134839419 - L2 LINE L2 -155 3158 2997 1680 213 73 35 chr6 54440141 54440592 -134838962 - MLT1J LTR MaLR -7 504 37 471 290 97 29 chr6 54440657 54440998 -134838556 - L2 LINE L2 -823 2491 2128 230 261 0 112 chr6 54441276 54441410 -134838144 + LTR67 LTR ERVL 418 536 -21 909 278 111 60 chr6 54441655 54442176 -134837378 - MLT1K LTR MaLR -15 573 26 306 296 181 31 chr6 54442373 54442599 -134836955 + MIR SINE MIR 2 261 -1 466 157 11 11 chr6 54443278 54443367 -134836187 - MER103 DNA DNA -67 99 11 233 311 40 0 chr6 54443898 54443972 -134835582 - MIR SINE MIR -68 140 64 238 341 63 8 chr6 54444714 54444840 -134834714 + MIR SINE MIR 30 162 -100 1666 135 0 4 chr6 54445419 54445663 -134833891 + AluJb SINE Alu 34 276 -36 354 282 215 27 chr6 54445697 54445846 -134833708 - MIR SINE MIR 0 262 86 341 245 132 0 chr6 54445988 54446094 -134833460 + L2 LINE L2 3192 3311 -2 324 242 50 33 chr6 54446102 54446214 -134833340 + L2 LINE L2 3146 3262 -10 228 67 0 0 chr6 54446214 54446244 -134833310 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 228 182 0 0 chr6 54446518 54446562 -134832992 + L2 LINE L2 3229 3272 0 249 33 0 0 chr6 54446653 54446683 -134832871 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1672 137 63 19 chr6 54446932 54447232 -134832322 + AluJb SINE Alu 2 313 0 687 251 62 0 chr6 54447232 54447411 -134832143 - MIR SINE MIR -2 260 71 264 304 38 64 chr6 54448225 54448538 -134831016 - HAL1b LINE L1 -2 6119 1187 7500 219 44 15 chr6 54448701 54448827 -134830727 + L1M4 LINE L1 1978 2099 -4283 1619 161 53 7 chr6 54448827 54448940 -134830614 + AluJb SINE Alu 1 107 -205 243 0 0 0 chr6 54448940 54448967 -134830587 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1619 161 53 7 chr6 54448967 54449138 -134830416 + AluJb SINE Alu 107 298 -14 2094 130 10 0 chr6 54449141 54449449 -134830105 + AluSx SINE Alu 1 311 -1 7500 219 44 15 chr6 54449449 54451734 -134827820 + L1M4 LINE L1 2100 4457 -1925 807 183 8 0 chr6 54451788 54451919 -134827635 + FLAM_C SINE Alu 1 132 -11 633 150 0 9 chr6 54451920 54452033 -134827521 + L1M4 LINE L1 5288 5399 -983 439 93 13 13 chr6 54452033 54452108 -134827446 + L1MB4 LINE L1 6106 6180 0 555 262 61 24 chr6 54452404 54452568 -134826986 + MIR SINE MIR 93 262 0 198 171 0 0 chr6 54453204 54453245 -134826309 + C-rich Low_complexity Low_complexity 2 42 0 217 306 83 28 chr6 54453394 54453502 -134826052 - MIR3 SINE MIR -84 124 11 2185 98 0 10 chr6 54454086 54454382 -134825172 - AluSx SINE Alu -19 293 1 1870 198 30 25 chr6 54454464 54454832 -134824722 + MLT1A2 LTR MaLR 5 374 0 233 279 272 6 chr6 54455376 54455534 -134824020 + L2 LINE L2 3073 3272 0 319 85 0 0 chr6 54456090 54456137 -134823417 - MER53 DNA DNA -1 188 142 225 179 0 0 chr6 54456228 54456267 -134823287 - MER53 DNA DNA -150 39 1 219 139 28 0 chr6 54456799 54456835 -134822719 + GA-rich Low_complexity Low_complexity 1 37 0 753 117 22 22 chr6 54456995 54457175 -134822379 + (TG)n Simple_repeat Simple_repeat 1 180 0 842 98 34 9 chr6 54457220 54457573 -134821981 + (TG)n Simple_repeat Simple_repeat 1 540 0 342 222 0 0 chr6 54458028 54458091 -134821463 - Charlie8 DNA MER1_type -2352 65 3 587 238 161 16 chr6 54458150 54458343 -134821211 + MIR SINE MIR 31 251 -11 306 377 19 13 chr6 54458372 54458531 -134821023 + L2 LINE L2 3016 3175 -97 294 277 24 0 chr6 54458559 54458642 -134820912 - L2 LINE L2 -2 3270 3186 399 239 32 71 chr6 54460658 54460813 -134818741 - MER104 DNA Tc2 -21 159 11 267 238 0 0 chr6 54460947 54461010 -134818544 + MIR SINE MIR 200 262 0 195 100 0 0 chr6 54461287 54461317 -134818237 + (CAAT)n Simple_repeat Simple_repeat 4 33 0 185 264 0 19 chr6 54461317 54461370 -134818184 - L2 LINE L2 -7 3265 3214 226 192 39 0 chr6 54462686 54462738 -134816816 - MER45 DNA AcHobo 0 1581 1528 200 163 23 0 chr6 54463313 54463356 -134816198 + (TG)n Simple_repeat Simple_repeat 1 44 0 198 0 0 0 chr6 54464761 54464783 -134814771 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 378 107 0 0 chr6 54465101 54465157 -134814397 + (TG)n Simple_repeat Simple_repeat 1 56 0 766 104 0 184 chr6 54466330 54466493 -134813061 + FLAM_C SINE Alu 1 133 0 296 361 98 22 chr6 54467237 54467647 -134811907 - L2 LINE L2 -542 2772 2332 248 302 23 0 chr6 54467757 54467843 -134811711 - MARNA DNA Mariner -90 496 409 232 306 105 16 chr6 54467843 54467967 -134811587 - L2 LINE L2 -19 3294 3160 867 165 18 12 chr6 54468004 54468168 -134811386 - MLT1E3 LTR MaLR -2 622 458 1504 177 0 0 chr6 54468170 54468418 -134811136 - AluJo SINE Alu -7 305 58 453 169 192 31 chr6 54468464 54468594 -134810960 - MLT1E1 LTR MaLR -503 151 1 844 204 71 173 chr6 54468594 54468972 -134810582 + L2 LINE L2 2763 3178 -135 2177 117 0 0 chr6 54468972 54469281 -134810273 + AluSx SINE Alu 2 310 -2 844 204 71 173 chr6 54469281 54469318 -134810236 + L2 LINE L2 3178 3217 -96 2140 122 0 0 chr6 54469318 54469613 -134809941 - AluSx SINE Alu -17 295 1 844 204 71 173 chr6 54469613 54469779 -134809775 + L2 LINE L2 3217 3311 -2 1850 232 35 60 chr6 54469910 54469971 -134809583 + L1M4 LINE L1 3090 3151 -2995 2026 129 0 3 chr6 54469971 54470266 -134809288 + AluSx SINE Alu 1 294 -18 1850 232 35 60 chr6 54470266 54470572 -134808982 + L1M4 LINE L1 3151 3433 -2713 1864 88 0 31 chr6 54470572 54470833 -134808721 + AluSx SINE Alu 1 253 -59 1850 232 35 60 chr6 54470833 54471159 -134808395 + L1M4 LINE L1 3433 3766 -2380 1337 175 40 0 chr6 54471192 54471444 -134808110 + MER7A DNA MER2_type 4 263 -83 801 231 48 15 chr6 54471480 54471749 -134807805 + L1M4 LINE L1 3786 4063 -2083 638 119 9 55 chr6 54471750 54471859 -134807695 + 5S rRNA rRNA 18 121 0 1158 244 22 16 chr6 54471895 54472215 -134807339 + L1M4 LINE L1 4076 4397 -1749 1233 251 61 36 chr6 54472237 54472763 -134806791 - HAL1 LINE L1 -1187 1320 782 719 211 0 9 chr6 54472767 54473001 -134806553 + (TG)n Simple_repeat Simple_repeat 1 231 0 207 211 0 0 chr6 54473002 54473040 -134806514 + (TATATG)n Simple_repeat Simple_repeat 6 43 0 296 241 115 0 chr6 54473043 54473130 -134806424 - HAL1 LINE L1 -1714 793 697 642 235 124 7 chr6 54473244 54473397 -134806157 - FAM SINE Alu -4 171 1 280 337 10 10 chr6 54473456 54473554 -134806000 + L2 LINE L2 3175 3272 0 1512 102 203 0 chr6 54473629 54473899 -134805655 + AluSx SINE Alu 1 318 0 401 315 43 9 chr6 54474513 54474693 -134804861 - MIR SINE MIR -10 252 65 559 263 123 6 chr6 54475298 54475469 -134804085 + MIR SINE MIR 10 200 -62 2053 115 13 7 chr6 54475508 54475813 -134803741 - AluSq SINE Alu -6 307 1 1463 176 49 39 chr6 54475852 54476159 -134803395 + AluJb SINE Alu 3 312 0 288 0 0 0 chr6 54476282 54476314 -134803240 + (CA)n Simple_repeat Simple_repeat 2 33 0 649 249 54 29 chr6 54476601 54476806 -134802748 - MIR SINE MIR 0 262 53 475 166 86 86 chr6 54477036 54477187 -134802367 - MER96 DNA MER1_type? -24 151 1 459 263 51 7 chr6 54479481 54479618 -134799936 - MIR3 SINE MIR -33 175 33 586 242 76 5 chr6 54482598 54482818 -134796736 - MIR SINE MIR -10 252 18 296 294 18 9 chr6 54483141 54483250 -134796304 - MIR3 SINE MIR -18 190 81 2070 111 28 0 chr6 54483269 54483557 -134795997 - AluSx SINE Alu -16 296 1 215 273 62 70 chr6 54484072 54484104 -134795450 + L2 LINE L2 2992 3023 -249 2215 105 0 0 chr6 54484104 54484410 -134795144 + AluSx SINE Alu 1 306 -6 215 273 62 70 chr6 54484410 54484505 -134795049 + L2 LINE L2 3023 3118 -154 485 258 88 13 chr6 54484756 54484915 -134794639 - MIR SINE MIR -85 177 7 219 36 0 0 chr6 54485597 54485625 -134793929 + (GA)n Simple_repeat Simple_repeat 1 28 0 180 135 0 0 chr6 54488610 54488647 -134790907 + (TG)n Simple_repeat Simple_repeat 1 37 0 38 22 0 0 chr6 54489020 54489065 -134790489 + GC_rich Low_complexity Low_complexity 1 45 0 22 80 0 0 chr6 54489689 54489739 -134789815 + GC_rich Low_complexity Low_complexity 1 50 0 228 135 0 0 chr6 54489890 54489927 -134789627 + (GGA)n Simple_repeat Simple_repeat 1 37 0 216 203 0 43 chr6 54490794 54490863 -134788691 + (CCCCG)n Simple_repeat Simple_repeat 2 67 0 318 196 93 28 chr6 54495079 54495186 -134784368 - MIR3 SINE MIR -37 171 58 622 279 25 35 chr6 54495730 54495931 -134783623 + MIR SINE MIR 57 255 -7 198 279 16 0 chr6 54496214 54496275 -134783279 + L3b LINE CR1 1325 1386 -197 564 198 76 12 chr6 54497548 54497720 -134781834 + MIR SINE MIR 80 262 0 208 311 0 0 chr6 54499792 54499866 -134779688 + CT-rich Low_complexity Low_complexity 2 75 0 204 185 0 0 chr6 54501039 54501093 -134778461 + GA-rich Low_complexity Low_complexity 2 55 0 285 127 38 0 chr6 54503818 54503897 -134775657 + (TA)n Simple_repeat Simple_repeat 2 83 0 204 97 0 0 chr6 54505050 54505081 -134774473 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 22 56 0 0 chr6 54505177 54505213 -134774341 + AT_rich Low_complexity Low_complexity 1 36 0 188 250 42 0 chr6 54506792 54506840 -134772714 - MIR SINE MIR -58 204 155 2308 89 3 0 chr6 54506840 54507144 -134772410 - AluSx SINE Alu -6 306 2 1074 293 69 21 chr6 54507162 54507690 -134771864 + L2 LINE L2 2601 3155 -158 793 189 32 162 chr6 54507693 54507871 -134771683 - MER33 DNA MER1_type -2261 324 221 2247 115 0 3 chr6 54507871 54508184 -134771370 - AluSx SINE Alu 0 312 1 793 189 32 162 chr6 54508184 54508387 -134771167 - MER33 DNA MER1_type -2364 221 1 565 136 144 16 chr6 54508399 54508524 -134771030 + L2 LINE L2 3171 3311 -2 528 293 28 14 chr6 54508729 54508910 -134770644 - MIR SINE MIR -68 140 3 425 271 103 42 chr6 54509624 54509838 -134769716 + MLT1H1 LTR MaLR 79 305 -244 237 197 0 0 chr6 54509838 54509899 -134769655 + GA-rich Low_complexity Low_complexity 2 62 0 477 234 191 43 chr6 54509899 54510130 -134769424 + MLT1H1 LTR MaLR 286 550 -5 233 291 110 8 chr6 54510375 54510502 -134769052 + L3b LINE CR1 1308 1447 -136 358 264 198 22 chr6 54511647 54511829 -134767725 + MIR SINE MIR 48 261 -1 206 100 0 0 chr6 54513099 54513129 -134766425 + MIR SINE MIR 37 66 -196 182 320 0 0 chr6 54513379 54513429 -134766125 + MIR SINE MIR 212 261 -1 469 329 24 29 chr6 54513439 54513646 -134765908 + MIR SINE MIR 7 212 -50 422 145 9 8 chr6 54514918 54515022 -134764532 + MER53 DNA DNA 3 189 0 365 324 0 0 chr6 54515537 54515648 -134763906 + MIR SINE MIR 33 143 -65 533 253 99 47 chr6 54515682 54515840 -134763714 - MER112 DNA MER1_type -12 248 73 198 0 0 0 chr6 54515840 54515862 -134763692 + (TG)n Simple_repeat Simple_repeat 2 23 0 533 253 99 47 chr6 54515862 54515936 -134763618 - MER112 DNA MER1_type -187 73 4 279 260 122 41 chr6 54517494 54517617 -134761937 - MIR3 SINE MIR -27 181 49 258 32 0 0 chr6 54517700 54517731 -134761823 + (TG)n Simple_repeat Simple_repeat 1 31 0 231 308 29 10 chr6 54518459 54518563 -134760991 + MIR3 SINE MIR 78 183 -25 235 241 12 36 chr6 54518878 54518961 -134760593 + GA-rich Low_complexity Low_complexity 5 85 0 222 294 69 0 chr6 54519046 54519148 -134760406 + L2 LINE L2 2996 3104 -209 1215 245 130 43 chr6 54519177 54519735 -134759819 + L2 LINE L2 2708 3310 -3 422 277 76 8 chr6 54519817 54519936 -134759618 + L2 LINE L2 3186 3312 -1 698 286 172 43 chr6 54521183 54521966 -134757588 + L2 LINE L2 2396 3303 -10 255 61 0 0 chr6 54521968 54522001 -134757553 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 309 285 18 60 chr6 54522205 54522348 -134757206 + MIR3 SINE MIR 48 185 -23 273 194 104 0 chr6 54522892 54522959 -134756595 + MIR3 SINE MIR 109 182 -26 334 283 110 12 chr6 54522990 54523142 -134756412 - MIR SINE MIR -56 152 38 195 139 0 0 chr6 54524046 54524082 -134755472 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 226 260 273 20 chr6 54524552 54524702 -134754852 - L2 LINE L2 -81 3191 3004 253 272 44 35 chr6 54524914 54525028 -134754526 - MIR SINE MIR -76 132 18 447 316 71 10 chr6 54526079 54526275 -134753279 - MIR SINE MIR -45 217 10 232 279 38 25 chr6 54526818 54526897 -134752657 - MIR SINE MIR -63 145 66 205 156 0 0 chr6 54527183 54527215 -134752339 - L3 LINE CR1 -137 1440 1409 1008 147 33 47 chr6 54527217 54527268 -134752286 + AluJo SINE Alu 85 135 -177 2017 115 23 0 chr6 54527268 54527572 -134751982 + AluY SINE Alu 1 311 0 1008 147 33 47 chr6 54527572 54527757 -134751797 + AluJo SINE Alu 135 312 0 242 377 143 8 chr6 54527987 54528345 -134751209 - L2 LINE L2 -682 2632 2227 1376 237 104 53 chr6 54528345 54528575 -134750979 - L2 LINE L2 -1 3312 3095 2210 97 3 0 chr6 54528575 54528874 -134750680 + AluSp SINE Alu 1 300 -13 1376 237 104 53 chr6 54528874 54529493 -134750061 - L2 LINE L2 -218 3095 2414 225 272 22 11 chr6 54529533 54529625 -134749929 - L2 LINE L2 -1410 1904 1812 1990 100 50 7 chr6 54529764 54530064 -134749490 - AluSq SINE Alu 0 313 1 1946 108 36 0 chr6 54530523 54530801 -134748753 - AluSx SINE Alu -24 288 1 2383 76 3 0 chr6 54531212 54531513 -134748041 + AluY SINE Alu 1 302 -9 288 265 68 114 chr6 54531629 54531832 -134747722 - HAL1 LINE L1 -2112 395 219 2356 89 0 0 chr6 54531832 54532135 -134747419 - AluY SINE Alu -8 303 1 288 265 68 114 chr6 54532135 54532343 -134747211 - HAL1 LINE L1 -2288 219 3 21 57 0 0 chr6 54533607 54533642 -134745912 + AT_rich Low_complexity Low_complexity 1 35 0 2243 113 3 0 chr6 54533726 54534035 -134745519 - AluSx SINE Alu -2 310 1 223 350 21 21 chr6 54534083 54534180 -134745374 - MIR SINE MIR -89 119 23 2009 87 17 17 chr6 54534511 54534635 -134744919 + AluSx SINE Alu 11 134 -178 2156 113 3 3 chr6 54534635 54534944 -134744610 + AluSg SINE Alu 1 309 -1 2009 87 17 17 chr6 54534944 54535107 -134744447 + AluSx SINE Alu 133 298 -14 299 250 231 0 chr6 54535183 54535291 -134744263 - MIR SINE MIR -40 222 90 1875 192 40 22 chr6 54535527 54535976 -134743578 - LTR2B LTR ERV1 0 490 1 1400 108 20 0 chr6 54536197 54536401 -134743153 - AluSg/x SINE Alu -24 288 81 1799 142 7 7 chr6 54536432 54536714 -134742840 + AluJb SINE Alu 3 284 -28 2023 102 0 84 chr6 54538647 54538822 -134740732 - AluSx SINE Alu -8 304 116 207 0 0 0 chr6 54538822 54538845 -134740709 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2126 44 33 11 chr6 54538847 54539120 -134740434 - AluY SINE Alu -31 280 2 2023 102 0 84 chr6 54539120 54539273 -134740281 - AluSx SINE Alu -197 115 1 197 204 184 0 chr6 54539273 54539322 -134740232 - L3 LINE CR1 -109 1468 1411 609 95 0 0 chr6 54540943 54541027 -134738527 + AluS SINE Alu 2 85 -227 384 254 166 22 chr6 54541042 54541223 -134738331 - MIR SINE MIR -21 241 35 226 396 10 0 chr6 54542153 54542249 -134737305 + MIR SINE MIR 64 160 -102 792 253 54 14 chr6 54542334 54542555 -134736999 - MIR SINE MIR -19 243 14 841 251 53 8 chr6 54543151 54543395 -134736159 - MIR SINE MIR -1 261 11 229 190 50 30 chr6 54544270 54544370 -134735184 + (CAGG)n Simple_repeat Simple_repeat 3 104 0 235 240 0 0 chr6 54544721 54544771 -134734783 + L2 LINE L2 3264 3313 0 523 294 181 12 chr6 54545186 54545529 -134734025 - L2 LINE L2 -2 3311 2911 5185 65 1 1 chr6 54545531 54546178 -134733376 - L1PA5 LINE L1 -1 6153 5507 704 18 2 3 chr6 54546178 54546280 -134733274 + L1PA5 LINE L1 5434 5534 -620 476 292 108 12 chr6 54546281 54546531 -134733023 - L2 LINE L2 -415 2899 2626 322 345 67 0 chr6 54546530 54546695 -134732859 + MIR SINE MIR 79 254 -8 * 182 351 96 11 chr6 54546732 54546826 -134732728 - L3 LINE CR1 -75 1502 1401 2423 157 13 13 chr6 54547302 54547698 -134731856 - MSTD LTR MaLR 0 396 1 205 326 112 31 chr6 54547810 54547908 -134731646 - MIR SINE MIR -16 246 141 757 264 62 73 chr6 54547968 54548324 -134731230 + LTR16A1 LTR ERVL 106 457 0 784 244 14 42 chr6 54548371 54548584 -134730970 - MIR SINE MIR 0 262 56 349 248 0 29 chr6 54548617 54548754 -134730800 + (CATA)n Simple_repeat Simple_repeat 4 136 0 209 231 15 31 chr6 54550492 54550557 -134728997 + CT-rich Low_complexity Low_complexity 4 67 0 506 298 115 52 chr6 54550559 54550942 -134728612 - L2 LINE L2 -1 3271 2865 321 293 121 59 chr6 54551133 54551389 -134728165 + MLT1K LTR MaLR 15 286 -302 263 267 76 76 chr6 54551394 54551525 -134728029 + MIR SINE MIR 132 262 0 287 235 106 12 chr6 54554117 54554202 -134725352 + MIR SINE MIR 23 115 -93 602 229 106 0 chr6 54555021 54555200 -134724354 - MIR SINE MIR -12 250 53 1609 233 119 20 chr6 54555205 54555900 -134723654 + L2 LINE L2 2545 3313 0 186 339 0 0 chr6 54556246 54556305 -134723249 - L2 LINE L2 -6 3266 3208 217 211 0 0 chr6 54556599 54556637 -134722917 + MIR SINE MIR 110 147 -61 217 306 222 9 chr6 54557101 54557209 -134722345 - MIR3 SINE MIR -63 145 15 726 287 55 28 chr6 54557415 54557669 -134721885 + MIR SINE MIR 2 262 0 453 296 51 15 chr6 54557890 54558086 -134721468 - MIR SINE MIR -11 251 49 618 121 11 58 chr6 54558330 54558504 -134721050 + (GGAA)n Simple_repeat Simple_repeat 3 168 0 264 172 0 0 chr6 54558521 54558579 -134720975 + GA-rich Low_complexity Low_complexity 3 60 0 253 376 0 0 chr6 54559516 54559609 -134719945 - MIR SINE MIR -63 145 53 233 253 42 32 chr6 54559698 54559793 -134719761 + MIR SINE MIR 123 218 -44 282 292 0 10 chr6 54559851 54559947 -134719607 + (TG)n Simple_repeat Simple_repeat 1 95 0 460 259 46 52 chr6 54560621 54560804 -134718750 - MIR3 SINE MIR -10 198 9 297 51 0 0 chr6 54560807 54560846 -134718708 + (CA)n Simple_repeat Simple_repeat 2 40 0 275 262 93 99 chr6 54560846 54561018 -134718536 + L2 LINE L2 3093 3263 -50 227 163 0 23 chr6 54561654 54561697 -134717857 + MIR SINE MIR 119 160 -102 202 291 0 0 chr6 54562479 54562534 -134717020 + L2 LINE L2 3137 3191 -81 507 296 27 32 chr6 54564178 54564364 -134715190 - MER5A DNA MER1_type 0 189 5 2128 94 3 20 chr6 54564697 54564996 -134714558 - AluSc SINE Alu -15 294 1 260 185 0 19 chr6 54565763 54565817 -134713737 - L3 LINE CR1 -754 823 771 404 310 126 73 chr6 54565928 54566286 -134713268 - L2 LINE L2 0 3272 2896 245 342 42 0 chr6 54566636 54566756 -134712798 + MIR SINE MIR 74 198 -64 568 298 37 11 chr6 54567255 54567446 -134712108 + MIR3 SINE MIR 10 205 -3 414 299 17 8 chr6 54567699 54567816 -134711738 - L2 LINE L2 0 3272 3155 379 237 18 26 chr6 54568947 54569061 -134710493 - MIR SINE MIR -76 132 20 604 205 24 16 chr6 54569085 54569212 -134710342 - MER45A DNA AcHobo 0 178 51 193 243 15 132 chr6 54569983 54570119 -134709435 + MIR3 SINE MIR 58 177 -31 299 306 212 36 chr6 54570835 54571113 -134708441 - L2 LINE L2 -338 2976 2650 1159 221 16 19 chr6 54571654 54571912 -134707642 - MIR SINE MIR 0 262 6 2167 81 13 10 chr6 54572511 54572809 -134706745 + AluSq SINE Alu 1 299 -14 393 204 66 72 chr6 54573132 54573284 -134706270 - MIR SINE MIR -72 190 40 209 313 111 0 chr6 54573257 54573381 -134706173 - MIR SINE MIR -27 181 38 * 429 331 61 7 chr6 54575081 54575229 -134704325 - MIR3 SINE MIR -31 177 22 2473 56 0 3 chr6 54575374 54575677 -134703877 - AluY SINE Alu -9 302 1 267 296 0 0 chr6 54575691 54575762 -134703792 + MIR3 SINE MIR 105 175 -33 247 292 112 24 chr6 54576182 54576564 -134702990 - L1ME3A LINE L1 -188 5982 5563 622 294 27 5 chr6 54576782 54576969 -134702585 - MIR SINE MIR -1 261 71 586 227 71 7 chr6 54578953 54579107 -134700447 + MER3 DNA MER1_type 1 164 -45 1130 188 0 10 chr6 54579116 54579318 -134700236 - AluJb SINE Alu -29 283 84 310 114 0 0 chr6 54579318 54579362 -134700192 + MER3 DNA MER1_type 155 198 -11 207 0 0 0 chr6 54581165 54581188 -134698366 + (TG)n Simple_repeat Simple_repeat 1 23 0 285 293 114 24 chr6 54581639 54581762 -134697792 + MIR3 SINE MIR 3 136 -72 733 181 10 93 chr6 54581945 54582072 -134697482 - MER5B DNA MER1_type -1 177 70 1682 174 14 11 chr6 54582072 54582359 -134697195 - AluJb SINE Alu -24 288 1 733 181 10 93 chr6 54582359 54582424 -134697130 - MER5B DNA MER1_type -108 70 1 210 188 0 42 chr6 54582567 54582615 -134696939 + MIR SINE MIR 100 145 -117 23 0 0 0 chr6 54584620 54584643 -134694911 + AT_rich Low_complexity Low_complexity 1 23 0 2033 136 0 0 chr6 54584646 54584954 -134694600 + AluSx SINE Alu 4 311 -1 265 190 190 0 chr6 54584990 54585069 -134694485 + L1MC4 LINE L1 7949 8042 0 500 239 117 27 chr6 54585823 54586011 -134693543 + MIR SINE MIR 28 232 -30 413 325 52 46 chr6 54588822 54589016 -134690538 + MIR SINE MIR 25 219 -43 302 206 48 0 chr6 54589059 54589122 -134690432 + MIR SINE MIR 108 173 -89 198 0 0 0 chr6 54590467 54590489 -134689065 + (TG)n Simple_repeat Simple_repeat 1 22 0 308 247 62 0 chr6 54590867 54590948 -134688606 + L2 LINE L2 3133 3218 -95 1342 186 38 0 chr6 54590949 54591213 -134688341 - AluJo SINE Alu -9 303 30 428 215 9 47 chr6 54591266 54591373 -134688181 + L2 LINE L2 3210 3312 -1 425 309 23 17 chr6 54591373 54591548 -134688006 - L2 LINE L2 -221 3051 2876 354 45 0 0 chr6 54591548 54591592 -134687962 + (TG)n Simple_repeat Simple_repeat 1 44 0 589 303 56 48 chr6 54591602 54591975 -134687579 - L2 LINE L2 -542 2772 2397 351 243 125 7 chr6 54592740 54592892 -134686662 - Charlie7 DNA MER1_type 0 2612 2443 302 282 121 13 chr6 54593168 54593317 -134686237 + L2 LINE L2 2934 3098 -174 786 192 58 0 chr6 54593334 54593490 -134686064 + MER6B DNA MER2_type 46 210 0 253 293 61 12 chr6 54593541 54593623 -134685931 + L2 LINE L2 3137 3222 -50 902 275 107 23 chr6 54593679 54593988 -134685566 + LTR16C LTR ERVL 127 461 -30 288 316 42 16 chr6 54594087 54594280 -134685274 - L2 LINE L2 -190 3082 2885 440 271 99 16 chr6 54594846 54595038 -134684516 + MIR3 SINE MIR 1 208 0 216 353 47 0 chr6 54595392 54595477 -134684077 + L3 LINE CR1 288 376 -1201 1446 271 103 13 chr6 54595955 54596491 -134683063 + L1MC4a LINE L1 5407 5990 -1818 5554 156 62 20 chr6 54597928 54598968 -134680586 - MER21-int LTR ERV1 -1036 3155 2072 612 211 45 8 chr6 54598968 54599101 -134680453 - MER21B LTR ERV1 -400 463 326 268 233 14 0 chr6 54599894 54599967 -134679587 + L2 LINE L2 2580 2653 -661 219 36 0 0 chr6 54600151 54600179 -134679375 + (TC)n Simple_repeat Simple_repeat 2 29 0 246 62 0 0 chr6 54600634 54600666 -134678888 + (TC)n Simple_repeat Simple_repeat 1 32 0 1493 176 45 28 chr6 54600666 54600956 -134678598 - AluJo SINE Alu -17 295 1 1286 272 104 19 chr6 54600986 54601609 -134677945 - L1ME3A LINE L1 -5 6165 5456 1276 231 17 22 chr6 54601854 54602213 -134677341 - L1ME1 LINE L1 -3 6163 5807 838 92 0 0 chr6 54602215 54602324 -134677230 - AluSq/x SINE Alu -204 109 1 264 175 0 0 chr6 54602414 54602477 -134677077 + GA-rich Low_complexity Low_complexity 2 64 0 1853 116 32 46 chr6 54603172 54603456 -134676098 + AluSx SINE Alu 15 294 -18 196 267 0 0 chr6 54603583 54603628 -134675926 - MIR SINE MIR -180 82 38 235 135 0 0 chr6 54604143 54604180 -134675374 + L3 LINE CR1 1539 1575 -2 267 253 36 24 chr6 54604670 54604753 -134674801 - MIR SINE MIR -102 160 77 223 286 71 63 chr6 54605647 54605868 -134673686 - MIR3 SINE MIR -26 236 10 218 336 74 25 chr6 54606597 54606719 -134672835 - MIR SINE MIR -66 196 69 1034 270 39 12 chr6 54607478 54607914 -134671640 + MLT1J LTR MaLR 1 488 -23 370 270 64 85 chr6 54608031 54608361 -134671193 + MLT1F LTR MaLR 20 342 -200 366 289 11 0 chr6 54608358 54608448 -134671106 + MLT1F LTR MaLR 447 537 -58 * 186 103 0 0 chr6 54608871 54608900 -134670654 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 853 221 84 9 chr6 54609049 54609262 -134670292 - MIR SINE MIR -1 261 33 191 186 47 0 chr6 54610659 54610702 -134668852 + MIR SINE MIR 40 84 -124 407 236 105 125 chr6 54610844 54611099 -134668455 + LTR8A LTR ERV1 1 248 -479 182 37 37 0 chr6 54611099 54611126 -134668428 + (CTAAG)n Simple_repeat Simple_repeat 2 29 0 407 236 105 125 chr6 54611126 54611231 -134668323 + LTR8A LTR ERV1 248 354 -373 682 256 71 33 chr6 54611339 54611677 -134667877 + LTR26 LTR ERV1 280 603 0 513 256 0 16 chr6 54612088 54612213 -134667341 + L2 LINE L2 3187 3309 -4 2004 135 0 30 chr6 54612493 54612797 -134666757 + AluJo SINE Alu 6 300 -12 216 273 73 55 chr6 54612799 54612909 -134666645 - MIR3 SINE MIR -82 126 15 206 346 111 7 chr6 54613306 54613459 -134666095 - L3 LINE CR1 -8 1569 1401 953 217 17 77 chr6 54613588 54613888 -134665666 - L1M4b LINE L1 -5372 1174 893 22 35 0 0 chr6 54613893 54613922 -134665632 + AT_rich Low_complexity Low_complexity 1 29 0 502 290 141 30 chr6 54613958 54614227 -134665327 - L1M4b LINE L1 -5667 875 577 251 306 0 14 chr6 54615433 54615505 -134664049 - L2 LINE L2 -76 3196 3126 387 254 284 0 chr6 54616108 54616277 -134663277 + MIR SINE MIR 35 251 -11 1435 247 90 10 chr6 54616518 54617008 -134662546 - L2 LINE L2 -8 3305 2775 350 293 78 6 chr6 54620289 54620450 -134659104 - MIR SINE MIR -57 205 30 729 274 53 30 chr6 54620647 54620946 -134658608 + L3 LINE CR1 559 864 -713 650 272 78 19 chr6 54620946 54621198 -134658356 + L1MC4a LINE L1 5639 5804 -438 261 0 0 0 chr6 54621380 54621409 -134658145 + (TG)n Simple_repeat Simple_repeat 2 30 0 653 332 61 72 chr6 54621429 54622055 -134657499 + L3 LINE CR1 886 1504 -73 199 333 14 0 chr6 54622071 54622140 -134657414 + MER5A DNA MER1_type 68 137 -52 700 348 95 9 chr6 54622381 54623010 -134656544 - L1ME2 LINE L1 -217 5947 5265 183 80 0 0 chr6 54623010 54623035 -134656519 + (TC)n Simple_repeat Simple_repeat 2 26 0 2296 96 3 0 chr6 54623363 54623655 -134655899 - AluSx SINE Alu -19 293 1 718 241 82 0 chr6 54624036 54624231 -134655323 - MIR SINE MIR -40 222 12 659 270 72 14 chr6 54624670 54624892 -134654662 + MIR SINE MIR 28 262 0 221 289 0 0 chr6 54625792 54625844 -134653710 - L2 LINE L2 -4 3309 3258 * 383 287 67 27 chr6 54625839 54625943 -134653611 - MIR SINE MIR -78 184 71 2301 105 3 3 chr6 54625943 54626249 -134653305 + AluSx SINE Alu 1 306 -6 383 287 67 27 chr6 54626249 54626294 -134653260 - MIR SINE MIR -191 71 29 374 228 337 21 chr6 54626353 54626546 -134653008 - MIR SINE MIR -1 261 8 1140 34 29 17 chr6 54627191 54627274 -134652280 + (GAAA)n Simple_repeat Simple_repeat 1 260 0 1140 34 29 17 chr6 54627274 54627449 -134652105 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 267 288 0 98 chr6 54627783 54627915 -134651639 + MIR SINE MIR 31 149 -113 445 297 84 70 chr6 54628334 54628368 -134651186 - L1MEd LINE L1 -5286 833 801 1379 248 73 39 chr6 54628368 54628905 -134650649 + MLT1H1 LTR MaLR 1 555 0 445 297 84 70 chr6 54628905 54629212 -134650342 - L1MEd LINE L1 -5318 801 541 272 268 41 21 chr6 54629497 54629594 -134649960 - L1MEd LINE L1 -5954 165 67 458 245 168 7 chr6 54630927 54631082 -134648472 - MIR SINE MIR -59 203 24 386 307 26 0 chr6 54631340 54631454 -134648100 + MIR SINE MIR 58 174 -88 180 271 165 0 chr6 54631790 54631875 -134647679 + MIR SINE MIR 43 141 -67 247 267 8 108 chr6 54632740 54632860 -134646694 + MER5B DNA MER1_type 31 138 -40 423 38 0 0 chr6 54633477 54633530 -134646024 + (CA)n Simple_repeat Simple_repeat 1 53 0 190 292 79 22 chr6 54634320 54634409 -134645145 + L2 LINE L2 3159 3252 -20 254 289 56 0 chr6 54635337 54635427 -134644127 + L2 LINE L2 3156 3250 -22 544 310 103 4 chr6 54636183 54636415 -134643139 + MIR SINE MIR 8 262 0 348 235 169 22 chr6 54637177 54637313 -134642241 + MIR SINE MIR 105 260 -2 292 229 57 0 chr6 54637553 54637623 -134641931 + MIR SINE MIR 107 180 -82 506 291 103 0 chr6 54638215 54638390 -134641164 - MIR SINE MIR -24 238 46 361 285 92 15 chr6 54638682 54638812 -134640742 - L2 LINE L2 0 3272 3133 2494 73 0 3 chr6 54640535 54640835 -134638719 + AluY SINE Alu 1 299 -12 2409 83 0 32 chr6 54640864 54641176 -134638378 - AluSx SINE Alu -10 302 1 2192 117 10 0 chr6 54641900 54642198 -134637356 - AluSx SINE Alu -11 301 1 328 333 17 8 chr6 54642212 54642332 -134637222 - L2 LINE L2 -5 3308 3188 195 176 39 20 chr6 54643095 54643146 -134636408 - L2 LINE L2 0 3313 3262 2229 99 3 20 chr6 54644313 54644615 -134634939 - AluSx SINE Alu -15 297 1 24 0 0 0 chr6 54644657 54644681 -134634873 + AT_rich Low_complexity Low_complexity 1 24 0 809 268 30 17 chr6 54644700 54644859 -134634695 + MIR SINE MIR 15 179 -83 2462 89 3 13 chr6 54644859 54645173 -134634381 - AluSp SINE Alu -2 311 1 809 268 30 17 chr6 54645173 54645248 -134634306 + MIR SINE MIR 179 252 -10 389 269 28 69 chr6 54645328 54645473 -134634081 + MIR SINE MIR 4 142 -120 626 268 30 0 chr6 54645512 54645676 -134633878 - MIR SINE MIR -33 229 61 1594 168 3 74 chr6 54645879 54646189 -134633365 + AluJo SINE Alu 11 298 -14 374 296 118 33 chr6 54648406 54648737 -134630817 - L2 LINE L2 -862 2452 2094 2318 71 0 3 chr6 54648948 54649244 -134630310 + AluY SINE Alu 1 295 -16 2352 94 0 0 chr6 54650805 54651114 -134628440 - AluSg SINE Alu -1 309 1 1017 204 47 17 chr6 54651193 54651428 -134628126 + MIR SINE MIR 2 243 -19 698 214 15 0 chr6 54651429 54651560 -134627994 + FLAM_A SINE Alu 1 133 0 249 301 24 36 chr6 54651631 54651714 -134627840 - L2 LINE L2 -58 3214 3133 659 203 45 23 chr6 54651843 54652020 -134627534 + L1ME3 LINE L1 5954 6134 -28 473 338 173 9 chr6 54652033 54652661 -134626893 - L2 LINE L2 -268 3004 2275 299 346 20 0 chr6 54652679 54652780 -134626774 - MIR SINE MIR -76 132 30 201 227 23 0 chr6 54654003 54654047 -134625507 + MIR SINE MIR 38 82 -126 241 300 57 0 chr6 54655790 54655860 -134623694 - MIR SINE MIR -119 89 16 1931 119 3 34 chr6 54655876 54656052 -134623502 - AluSq SINE Alu -29 284 119 2367 66 0 7 chr6 54656052 54656353 -134623201 - AluY SINE Alu -12 299 1 1931 119 3 34 chr6 54656353 54656469 -134623085 - AluSq SINE Alu -194 119 1 181 333 16 0 chr6 54657041 54657104 -134622450 + L2 LINE L2 3198 3261 -52 827 178 86 0 chr6 54657453 54657616 -134621938 + MER20 DNA MER1_type 36 212 -7 2355 82 3 0 chr6 54658133 54658438 -134621116 - AluSp SINE Alu -7 306 1 407 265 168 19 chr6 54658648 54658861 -134620693 - MIR SINE MIR -6 256 16 553 144 29 0 chr6 54659603 54659707 -134619847 + LTR33 LTR ERVL 1 107 -414 465 177 10 21 chr6 54659815 54659911 -134619643 + LTR33 LTR ERVL 427 521 0 2262 100 10 0 chr6 54660450 54660759 -134618795 + AluSx SINE Alu 1 312 0 437 316 51 71 chr6 54662379 54662575 -134616979 - MIR SINE MIR -11 251 60 248 153 333 0 chr6 54663174 54663246 -134616308 + L2 LINE L2 3209 3304 -9 366 308 15 0 chr6 54663416 54663546 -134616008 + (CA)n Simple_repeat Simple_repeat 2 133 0 418 289 90 6 chr6 54663856 54664022 -134615532 - MIR SINE MIR -71 191 12 474 275 96 24 chr6 54664376 54664610 -134614944 + L1MC4a LINE L1 5661 5907 -255 1697 162 48 0 chr6 54664628 54664918 -134614636 - AluSx SINE Alu -8 304 1 1921 128 6 40 chr6 54664985 54665306 -134614248 + AluSx SINE Alu 1 310 -2 526 267 107 24 chr6 54665561 54665767 -134613787 + MIR SINE MIR 40 262 0 276 173 133 13 chr6 54665993 54666068 -134613486 - MIR SINE MIR -108 154 71 297 0 0 0 chr6 54666739 54666772 -134612782 + (TA)n Simple_repeat Simple_repeat 1 33 0 373 238 349 0 chr6 54667424 54667596 -134611958 + MIR SINE MIR 22 253 -9 1485 154 86 11 chr6 54667821 54668100 -134611454 - AluSq SINE Alu -13 300 1 2076 109 3 0 chr6 54668138 54668421 -134611133 + AluSq SINE Alu 1 284 -29 236 297 155 32 chr6 54668651 54668870 -134610684 + L2 LINE L2 2809 3054 -218 594 266 29 2 chr6 54668967 54669120 -134610434 + MIR SINE MIR 8 161 -62 347 307 154 7 chr6 54669161 54669454 -134610100 + L2 LINE L2 2851 3186 -127 192 385 39 10 chr6 54669553 54669657 -134609897 + L2 LINE L2 3155 3261 -11 2258 97 0 3 chr6 54670112 54670420 -134609134 - AluSp SINE Alu -4 309 3 521 250 31 8 chr6 54671440 54671568 -134607986 - MIR SINE MIR -113 149 19 3128 181 65 24 chr6 54671793 54671810 -134607744 - L1MB5 LINE L1 -36 6138 6123 1883 129 10 3 chr6 54671810 54672104 -134607450 - AluSx SINE Alu -16 296 1 3128 181 65 24 chr6 54672104 54672154 -134607400 - L1MB5 LINE L1 -51 6123 6077 1866 153 10 13 chr6 54672154 54672467 -134607087 + AluJb SINE Alu 1 312 0 3128 181 65 24 chr6 54672467 54673120 -134606434 - L1MB5 LINE L1 -97 6077 5387 290 211 13 13 chr6 54673191 54673267 -134606287 + MIR SINE MIR 167 242 -20 896 269 74 3 chr6 54673581 54673893 -134605661 + LTR16C LTR ERVL 158 491 0 194 358 60 52 chr6 54673895 54674029 -134605525 - L2 LINE L2 -26 3246 3112 * 303 260 52 0 chr6 54674019 54674096 -134605458 - MIR SINE MIR -2 260 180 186 118 0 0 chr6 54674728 54674762 -134604792 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 495 242 17 25 chr6 54674767 54674887 -134604667 - MIR SINE MIR -81 181 63 996 130 11 51 chr6 54675051 54675228 -134604326 - AluJb SINE Alu -14 298 129 202 211 19 19 chr6 54675251 54675303 -134604251 + L3 LINE CR1 619 670 -907 1930 169 0 0 chr6 54675307 54675620 -134603934 + AluSp SINE Alu 1 313 0 1196 210 25 0 chr6 54675856 54676099 -134603455 + MIR SINE MIR 14 262 0 205 234 0 0 chr6 54676480 54676527 -134603027 + MIR SINE MIR 61 107 -101 469 269 58 49 chr6 54677014 54677237 -134602317 - L1MC5 LINE L1 -36 7925 7701 1646 155 3 36 chr6 54677275 54677578 -134601976 - AluJo SINE Alu -19 293 1 891 156 0 0 chr6 54678165 54678300 -134601254 + FRAM SINE Alu 1 134 -42 1389 155 8 24 chr6 54678545 54678797 -134600757 - AluJo SINE Alu 0 312 65 295 279 73 36 chr6 54679673 54679838 -134599716 + MIR3 SINE MIR 13 183 -25 823 246 49 25 chr6 54680055 54680299 -134599255 - MIR SINE MIR 0 262 13 199 311 129 15 chr6 54681104 54681236 -134598318 + MIR3 SINE MIR 1 147 -61 32 0 0 0 chr6 54681606 54681638 -134597916 + AT_rich Low_complexity Low_complexity 1 32 0 666 202 0 9 chr6 54681643 54681757 -134597797 - FLAM_C SINE Alu -26 117 5 229 304 98 0 chr6 54682375 54682477 -134597077 + MIR3 SINE MIR 81 192 -16 2278 77 0 13 chr6 54683332 54683631 -134595923 + AluY SINE Alu 1 295 -16 438 268 43 18 chr6 54683727 54683891 -134595663 - MER5B DNA MER1_type -6 172 5 213 344 32 0 chr6 54683921 54684014 -134595540 - MIR SINE MIR -77 131 36 227 242 125 37 chr6 54684071 54684199 -134595355 + MIR SINE MIR 32 163 -45 428 327 75 0 chr6 54684836 54684995 -134594559 - MIR SINE MIR -15 247 77 228 271 19 65 chr6 54685380 54685487 -134594067 - L2 LINE L2 -1 3271 3170 246 302 0 42 chr6 54685513 54685609 -134593945 - Charlie7 DNA MER1_type 0 2612 2521 26 30 0 0 chr6 54687083 54687116 -134592438 + GC_rich Low_complexity Low_complexity 1 33 0 205 180 0 60 chr6 54687764 54687814 -134591740 + C-rich Low_complexity Low_complexity 1 47 0 200 35 35 0 chr6 54690300 54690329 -134589225 + (CCCCCT)n Simple_repeat Simple_repeat 4 33 0 204 229 29 0 chr6 54690404 54690474 -134589080 + (CG)n Simple_repeat Simple_repeat 2 73 0 334 266 201 0 chr6 54691466 54691605 -134587949 + MIR SINE MIR 65 231 -31 601 310 108 26 chr6 54692261 54692784 -134586770 + L1MC4a LINE L1 4624 5103 -1080 791 179 0 0 chr6 54692784 54692907 -134586647 + FLAM_A SINE Alu 4 126 -7 601 310 108 26 chr6 54692907 54693509 -134586045 + L1MC4a LINE L1 5103 5846 -337 585 215 37 74 chr6 54693580 54693619 -134585935 + MER5A DNA MER1_type 33 72 -117 1618 124 110 0 chr6 54693619 54693892 -134585662 + AluJb SINE Alu 1 303 -9 585 215 37 74 chr6 54693892 54694015 -134585539 + MER5A DNA MER1_type 72 189 0 933 101 0 0 chr6 54694221 54694350 -134585204 + AluSg/x SINE Alu 172 300 -12 2378 100 35 72 chr6 54694378 54694807 -134584747 + L1MB3 LINE L1 5762 6174 -9 219 288 27 108 chr6 54696871 54696982 -134582572 - L2 LINE L2 -49 3223 3122 184 231 39 0 chr6 54697341 54697393 -134582161 - L2 LINE L2 -86 3186 3133 181 224 41 0 chr6 54698640 54698689 -134580865 + L2 LINE L2 3139 3189 -83 225 265 0 0 chr6 54698925 54698974 -134580580 + L2 LINE L2 3139 3187 -85 296 267 69 0 chr6 54699405 54699506 -134580048 - MIR SINE MIR -65 143 36 222 292 142 9 chr6 54699927 54700040 -134579514 - MIR SINE MIR -63 145 18 586 226 103 46 chr6 54700087 54700282 -134579272 + MIR SINE MIR 13 218 -44 316 262 187 9 chr6 54701124 54701231 -134578323 + MIR3 SINE MIR 75 200 -8 462 271 84 19 chr6 54701960 54702115 -134577439 - MIR SINE MIR -10 252 88 189 336 47 9 chr6 54702315 54702422 -134577132 - L3b LINE CR1 -196 1387 1277 253 331 48 18 chr6 54702536 54702702 -134576852 - L3b LINE CR1 -299 1284 1114 464 288 39 26 chr6 54703054 54703207 -134576347 - MIR SINE MIR 0 262 108 525 32 0 0 chr6 54703500 54703563 -134575991 + (TCCA)n Simple_repeat Simple_repeat 2 64 0 921 192 209 51 chr6 54703816 54704108 -134575446 - MLT1J LTR MaLR -154 357 20 511 191 64 0 chr6 54704336 54704446 -134575108 - MIR SINE MIR -69 193 77 201 182 0 0 chr6 54705824 54705857 -134573697 + (CA)n Simple_repeat Simple_repeat 2 34 0 282 371 23 8 chr6 54707438 54707570 -134571984 - MER5A DNA MER1_type -45 144 11 543 309 129 14 chr6 54707580 54707790 -134571764 + MIR SINE MIR 20 253 -9 2182 112 0 3 chr6 54707811 54708123 -134571431 + AluY SINE Alu 1 311 0 634 252 147 15 chr6 54708346 54708563 -134570991 - MIR SINE MIR 0 262 19 214 273 106 0 chr6 54709493 54709559 -134569995 - L2 LINE L2 -21 3292 3220 631 295 6 6 chr6 54709971 54710154 -134569400 - MER117 DNA MER1_type -14 183 1 463 318 37 5 chr6 54710709 54710898 -134568656 - LTR67 LTR ERVL 0 557 363 333 0 0 0 chr6 54711058 54711095 -134568459 + (CAA)n Simple_repeat Simple_repeat 2 38 0 250 309 21 41 chr6 54711145 54711242 -134568312 - LTR67 LTR ERVL -363 194 100 253 320 58 29 chr6 54711672 54711775 -134567779 - L2 LINE L2 -26 3287 3182 224 303 0 30 chr6 54712337 54712469 -134567085 + C-rich Low_complexity Low_complexity 1 128 0 190 286 32 0 chr6 54712921 54712984 -134566570 - L2 LINE L2 -82 3190 3126 305 263 20 50 chr6 54713737 54713836 -134565718 + MIR3 SINE MIR 96 191 -17 318 274 32 11 chr6 54714182 54714277 -134565277 - L2 LINE L2 -11 3302 3206 * 524 273 98 27 chr6 54714275 54714458 -134565096 + MIR SINE MIR 15 210 -52 329 327 74 38 chr6 54714551 54714870 -134564684 - L2 LINE L2 -189 3083 2724 260 325 81 38 chr6 54714986 54715150 -134564404 - MIR SINE MIR -48 214 39 627 290 76 73 chr6 54716316 54716630 -134562924 - L2 LINE L2 0 3272 2958 298 320 154 6 chr6 54716678 54716853 -134562701 - L2 LINE L2 -455 2859 2659 2274 99 3 0 chr6 54717392 54717696 -134561858 + AluSx SINE Alu 1 305 -7 493 322 4 0 chr6 54718213 54718493 -134561061 + (TG)n Simple_repeat Simple_repeat 1 281 0 375 274 6 30 chr6 54718414 54718578 -134560976 + (TATATG)n Simple_repeat Simple_repeat 6 165 0 * 450 244 0 9 chr6 54718580 54718929 -134560625 + (TG)n Simple_repeat Simple_repeat 1 345 0 332 264 6 0 chr6 54718945 54719108 -134560446 + (TG)n Simple_repeat Simple_repeat 1 164 0 546 228 0 0 chr6 54719156 54719400 -134560154 + (TG)n Simple_repeat Simple_repeat 1 244 0 430 213 0 43 chr6 54719418 54719606 -134559948 + (TG)n Simple_repeat Simple_repeat 1 180 0 712 286 10 0 chr6 54720440 54720643 -134558911 + MIR SINE MIR 45 249 -13 186 43 0 0 chr6 54721641 54721664 -134557890 + (TCCCC)n Simple_repeat Simple_repeat 5 27 0 211 137 20 20 chr6 54722083 54722134 -134557420 + CT-rich Low_complexity Low_complexity 3 53 0 230 54 0 27 chr6 54722190 54722227 -134557327 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 280 282 0 0 chr6 54723493 54723564 -134555990 - MIR SINE MIR -57 151 81 399 41 0 0 chr6 54725064 54725113 -134554441 + (TGGA)n Simple_repeat Simple_repeat 2 50 0 200 274 20 0 chr6 54725203 54725254 -134554300 + (TGAG)n Simple_repeat Simple_repeat 2 53 0 335 235 129 38 chr6 54725538 54725670 -134553884 + MIR SINE MIR 8 151 -111 255 281 125 0 chr6 54727882 54727978 -134551576 - MIR SINE MIR -82 180 73 234 253 91 20 chr6 54728100 54728199 -134551355 + L2 LINE L2 3138 3243 -29 * 265 262 140 28 chr6 54728191 54728298 -134551256 + MIR SINE MIR 16 134 -74 287 353 96 27 chr6 54728933 54729120 -134550434 - MIR3 SINE MIR -5 203 4 280 297 0 14 chr6 54729196 54729270 -134550284 - MER5B DNA MER1_type -105 73 1 384 318 56 0 chr6 54729311 54729437 -134550117 + MIR SINE MIR 70 202 -60 1070 229 184 38 chr6 54729446 54729710 -134549844 + L2 LINE L2 2834 3058 -255 1509 178 0 0 chr6 54729710 54729999 -134549555 - AluJo SINE Alu 0 312 44 1070 229 184 38 chr6 54729999 54730153 -134549401 + L2 LINE L2 3058 3313 0 180 364 0 0 chr6 54730336 54730402 -134549152 + MIR SINE MIR 79 144 -118 2227 96 10 6 chr6 54731337 54731649 -134547905 - AluSq SINE Alu 0 313 1 347 341 107 8 chr6 54731665 54732048 -134547506 - L2 LINE L2 -277 2995 2562 282 346 92 0 chr6 54732696 54732826 -134546728 - MIR3 SINE MIR -2 206 65 393 291 32 19 chr6 54732828 54733020 -134546534 - MIR3 SINE MIR -22 186 11 422 271 24 82 chr6 54734115 54734224 -134545330 + L2 LINE L2 2605 2702 -612 2292 80 10 0 chr6 54734224 54734525 -134545029 + AluSp SINE Alu 1 304 -9 422 271 24 82 chr6 54734525 54734585 -134544969 + L2 LINE L2 2702 2764 -550 1644 139 40 4 chr6 54734966 54735266 -134544288 + AluJb SINE Alu 1 310 0 230 204 0 0 chr6 54735464 54735508 -134544046 + MIR SINE MIR 93 136 -72 425 270 47 20 chr6 54735686 54735834 -134543720 - MIR SINE MIR -22 240 89 668 199 262 0 chr6 54736206 54736347 -134543207 - MER45A DNA AcHobo 0 178 1 263 328 0 0 chr6 54737014 54737078 -134542476 + L2 LINE L2 3250 3313 0 435 304 190 11 chr6 54737588 54737807 -134541747 + MIR SINE MIR 10 262 0 378 257 112 47 chr6 54739402 54739616 -134539938 - MIR SINE MIR 0 262 35 23 0 0 0 chr6 54739703 54739726 -134539828 + AT_rich Low_complexity Low_complexity 1 23 0 2152 103 0 0 chr6 54739813 54740117 -134539437 - AluSg SINE Alu 0 304 1 3023 183 30 57 chr6 54740424 54740916 -134538638 - L1MC3 LINE L1 -1579 6206 5741 2028 143 0 31 chr6 54740916 54741238 -134538316 - AluJb SINE Alu 0 312 1 3023 183 30 57 chr6 54741238 54741517 -134538037 - L1MC3 LINE L1 -2044 5741 5456 565 320 23 54 chr6 54741611 54741961 -134537593 + MLT1I LTR MaLR 71 409 0 227 305 24 12 chr6 54742068 54742150 -134537404 - MIR SINE MIR -2 260 178 198 294 0 0 chr6 54742975 54743026 -134536528 + MIR SINE MIR 209 259 -3 1070 227 10 0 chr6 54743121 54743328 -134536226 + MER3 DNA MER1_type 1 209 0 675 257 99 0 chr6 54743346 54743548 -134536006 + MIR SINE MIR 40 261 -1 190 273 0 0 chr6 54744488 54744532 -134535022 + L2 LINE L2 3140 3183 -89 324 276 119 8 chr6 54744647 54744781 -134534773 - L2 LINE L2 -237 3035 2887 190 300 0 0 chr6 54745106 54745166 -134534388 - L3b LINE CR1 -186 1397 1338 289 296 4 39 chr6 54745420 54745614 -134533940 + CT-rich Low_complexity Low_complexity 1 187 0 506 245 105 14 chr6 54747883 54748026 -134531528 - MIR SINE MIR -48 214 59 492 256 207 0 chr6 54748957 54749020 -134530534 - MER5C DNA MER1_type 0 324 275 2047 117 0 3 chr6 54749020 54749311 -134530243 + AluSx SINE Alu 1 290 -22 492 256 207 0 chr6 54749311 54749368 -134530186 - MER5C DNA MER1_type -49 275 231 1984 127 3 3 chr6 54749368 54749667 -134529887 - AluSq SINE Alu -14 299 1 492 256 207 0 chr6 54749667 54749772 -134529782 - MER5C DNA MER1_type -93 231 51 520 233 70 35 chr6 54749779 54749951 -134529603 - MER112 DNA MER1_type -60 200 23 338 205 17 60 chr6 54750516 54750633 -134528921 - L1M4 LINE L1 -385 5799 5688 1222 279 35 18 chr6 54750901 54751296 -134528258 - MLT1L LTR MaLR -18 597 196 750 164 0 50 chr6 54752666 54752806 -134526748 - FLAM_C SINE Alu 0 133 1 1074 300 104 39 chr6 54752806 54753009 -134526545 - L1MC4a LINE L1 -743 5403 5215 1862 132 10 3 chr6 54753009 54753322 -134526232 - AluSg SINE Alu 0 315 1 1074 300 104 39 chr6 54753322 54753352 -134526202 - L1MC4a LINE L1 -931 5215 5188 2126 94 0 7 chr6 54753352 54753670 -134525884 + AluSq SINE Alu 1 316 0 1074 300 104 39 chr6 54753670 54755110 -134524444 - L1MC4a LINE L1 -958 5188 4029 1097 170 10 10 chr6 54757312 54757506 -134522048 - MLT1L LTR MaLR -432 194 1 334 212 81 40 chr6 54757895 54757994 -134521560 + LTR33A LTR ERVL 421 523 0 623 284 11 81 chr6 54757994 54758117 -134521437 - L1ME4a LINE L1 -203 5918 5788 2449 76 0 0 chr6 54758117 54758421 -134521133 + AluSc SINE Alu 1 304 -5 623 284 11 81 chr6 54758421 54758667 -134520887 - L1ME4a LINE L1 -333 5788 5575 3258 238 54 44 chr6 54758680 54759209 -134520345 + L2 LINE L2 2005 2527 -786 1976 134 3 3 chr6 54759209 54759508 -134520046 + AluSx SINE Alu 1 299 -13 3258 238 54 44 chr6 54759508 54760157 -134519397 + L2 LINE L2 2527 3201 -112 2363 66 3 0 chr6 54760157 54760460 -134519094 - AluY SINE Alu -7 304 1 3258 238 54 44 chr6 54760460 54760575 -134518979 + L2 LINE L2 3201 3313 0 504 175 16 48 chr6 54760733 54760859 -134518695 + L1MA7 LINE L1 6169 6290 -1 446 256 39 19 chr6 54760898 54761054 -134518500 + MIR SINE MIR 104 262 0 336 282 105 24 chr6 54761054 54761178 -134518376 - MIR3 SINE MIR -63 145 12 223 292 42 31 chr6 54761277 54761373 -134518181 - L3 LINE CR1 -72 1505 1409 448 303 0 14 chr6 54761809 54761951 -134517603 + MLT1J LTR MaLR 221 360 -151 312 315 63 0 chr6 54762318 54762445 -134517109 + L2 LINE L2 3138 3272 0 411 296 0 9 chr6 54762619 54762727 -134516827 + MER5B DNA MER1_type 3 109 -69 668 240 23 68 chr6 54762966 54763187 -134516367 - MIR SINE MIR -29 233 23 197 308 25 58 chr6 54764473 54764593 -134514961 - MIR SINE MIR -112 150 35 257 304 20 10 chr6 54765417 54765519 -134514035 + (TGG)n Simple_repeat Simple_repeat 3 105 0 367 264 64 8 chr6 54765557 54765682 -134513872 + MIR SINE MIR 13 144 -118 338 309 29 34 chr6 54765814 54766021 -134513533 + L2 LINE L2 1703 1908 -1406 1693 184 3 0 chr6 54766987 54767280 -134512274 - AluJo SINE Alu -18 294 1 328 133 24 0 chr6 54767649 54767732 -134511822 + (CA)n Simple_repeat Simple_repeat 2 86 0 530 256 88 70 chr6 54767806 54768079 -134511475 + L1MEd LINE L1 780 1046 -5164 2203 120 0 0 chr6 54768079 54768379 -134511175 + AluSx SINE Alu 1 300 -12 530 256 88 70 chr6 54768379 54768624 -134510930 + L1MEd LINE L1 1046 1343 -4867 1811 99 18 93 chr6 54768681 54769013 -134510541 - AluSc SINE Alu -2 307 1 1047 90 0 0 chr6 54769014 54769148 -134510406 - AluSq/x SINE Alu -179 134 1 244 304 27 18 chr6 54769149 54769261 -134510293 + L1MEd LINE L1 1359 1471 -4839 3553 203 97 17 chr6 54769282 54770065 -134509489 - MER21B LTR ERV1 0 863 18 6090 151 43 30 chr6 54770073 54771255 -134508299 - Tigger3b DNA MER2_type -32 1199 2 313 314 85 4 chr6 54771279 54771527 -134508027 + L1MEd LINE L1 1473 1740 -4570 351 307 118 58 chr6 54771547 54771876 -134507678 + L1MEd LINE L1 1830 2178 -3953 498 151 0 2 chr6 54771902 54772152 -134507402 + AluJb SINE Alu 6 299 -13 668 243 101 8 chr6 54772155 54772402 -134507152 + L1MEd LINE L1 2194 2463 -3666 1295 209 76 7 chr6 54772402 54772703 -134506851 - MER2 DNA MER2_type 0 345 24 213 314 124 31 chr6 54772733 54772959 -134506595 + L2 LINE L2 2809 3055 -217 281 310 0 0 chr6 54773086 54773173 -134506381 + MIR3 SINE MIR 73 159 -49 334 292 80 0 chr6 54773203 54773340 -134506214 - MER20B DNA MER1_type -610 173 26 2141 85 7 7 chr6 54773586 54773879 -134505675 - AluSx SINE Alu -19 293 1 242 341 0 0 chr6 54774718 54774806 -134504748 - MIR SINE MIR -62 200 113 876 289 9 0 chr6 54775112 54775340 -134504214 - MIR SINE MIR 0 262 33 443 328 16 38 chr6 54775393 54775576 -134503978 + MIR3 SINE MIR 19 197 -11 203 133 22 0 chr6 54776651 54776696 -134502858 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 257 357 101 12 chr6 54776702 54776960 -134502594 - L3 LINE CR1 -83 1494 1214 710 149 18 18 chr6 54776979 54777147 -134502407 + CT-rich Low_complexity Low_complexity 4 171 0 289 319 118 0 chr6 54777171 54777290 -134502264 - L2 LINE L2 -1 3271 3139 441 334 168 7 chr6 54777400 54777822 -134501732 - L3 LINE CR1 -348 1229 740 378 314 34 42 chr6 54778589 54778828 -134500726 + L2 LINE L2 2818 3054 -218 181 429 26 0 chr6 54778939 54779093 -134500461 + MIR SINE MIR 105 262 0 728 276 102 17 chr6 54779152 54779446 -134500108 + L2 LINE L2 2960 3278 -35 417 54 0 0 chr6 54779512 54779568 -134499986 + (GA)n Simple_repeat Simple_repeat 2 57 0 391 246 42 8 chr6 54780808 54780926 -134498628 - MIR SINE MIR -64 144 23 218 243 0 43 chr6 54781762 54781832 -134497722 - L2 LINE L2 -80 3192 3126 252 0 0 0 chr6 54783903 54783931 -134495623 + (CCG)n Simple_repeat Simple_repeat 3 30 0 25 51 0 0 chr6 54784401 54784440 -134495114 + GC_rich Low_complexity Low_complexity 1 39 0 843 150 116 23 chr6 54784633 54784806 -134494748 + MER53 DNA DNA 1 189 0 349 247 0 13 chr6 54787058 54787135 -134492419 + MIR SINE MIR 84 159 -103 1336 185 8 8 chr6 54787159 54787418 -134492136 - AluJo SINE Alu -1 311 53 4351 113 344 98 chr6 54787419 54788777 -134490777 - pTR5 LTR ERV1 0 2438 747 225 274 0 0 chr6 54788777 54788828 -134490726 - AluJo SINE Alu -249 51 1 314 353 6 0 chr6 54789544 54789717 -134489837 + (CA)n Simple_repeat Simple_repeat 1 174 0 2089 189 15 50 chr6 54789728 54790203 -134489351 + MLT1C LTR MaLR 1 458 -9 468 0 0 0 chr6 54790213 54790265 -134489289 + (CA)n Simple_repeat Simple_repeat 1 52 0 1860 227 45 4 chr6 54790478 54790940 -134488614 + L1ME3 LINE L1 5674 6154 -8 1671 163 0 42 chr6 54792808 54793115 -134486439 - AluJo SINE Alu -17 295 2 206 279 44 15 chr6 54793718 54793786 -134485768 - MIR SINE MIR -115 93 24 498 256 88 19 chr6 54793904 54794064 -134485490 + MIR SINE MIR 17 187 -75 327 329 14 7 chr6 54794150 54794296 -134485258 + (CCA)n Simple_repeat Simple_repeat 1 147 0 662 269 65 25 chr6 54794634 54794835 -134484719 + MIR SINE MIR 48 256 -6 189 74 0 0 chr6 54794836 54794863 -134484691 + (TTA)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr6 54794869 54794891 -134484663 + GC_rich Low_complexity Low_complexity 1 22 0 466 204 71 9 chr6 54795078 54795191 -134484363 + MIR SINE MIR 24 143 -119 215 348 0 22 chr6 54796520 54796609 -134482945 + L2 LINE L2 3106 3192 -80 417 54 0 0 chr6 54797367 54797423 -134482131 + (CA)n Simple_repeat Simple_repeat 2 57 0 831 137 8 0 chr6 54797466 54797590 -134481964 - AluJo SINE Alu -176 136 12 502 240 207 0 chr6 54797604 54797783 -134481771 - MIR SINE MIR 0 262 47 317 285 124 24 chr6 54797793 54798091 -134481463 - L1MC5 LINE L1 -25 7936 7609 288 250 38 0 chr6 54800681 54800761 -134478793 - MIR SINE MIR -115 147 65 936 239 183 14 chr6 54801895 54802328 -134477226 + L2 LINE L2 2644 3136 -177 332 246 15 0 chr6 54802333 54802398 -134477156 + MLT1D LTR MaLR 1 66 -439 810 205 92 31 chr6 54802405 54802634 -134476920 + MLT1C LTR MaLR 6 248 -219 373 140 41 29 chr6 54802628 54802717 -134476837 + MLT1B LTR MaLR 303 374 -16 * 452 243 0 113 chr6 54802722 54802907 -134476647 + L2 LINE L2 3150 3313 0 784 282 67 32 chr6 54803531 54804007 -134475547 + MLT1H LTR MaLR 12 543 -6 294 198 35 138 chr6 54805447 54805541 -134474013 + MIR SINE MIR 89 170 -92 1495 150 88 7 chr6 54805541 54805814 -134473740 - AluJo SINE Alu -7 295 1 294 198 35 138 chr6 54805814 54805835 -134473719 + MIR SINE MIR 170 192 -70 355 266 40 75 chr6 54807134 54807307 -134472247 + LTR16C LTR ERVL 325 491 0 815 189 19 13 chr6 54808530 54808689 -134470865 + MLT2B3 LTR ERVL 1 160 -394 919 270 21 16 chr6 54809384 54809679 -134469875 + L1ME3A LINE L1 5637 5940 -230 2444 191 69 11 chr6 54810115 54810660 -134468894 - MLT1E1 LTR MaLR -2 652 1 207 320 82 10 chr6 54810663 54810760 -134468794 + MIR SINE MIR 108 211 -51 437 261 22 30 chr6 54810761 54810895 -134468659 - L2 LINE L2 -2 3311 3179 3240 208 38 55 chr6 54810900 54811235 -134468319 + L1ME1 LINE L1 4436 4775 -1391 729 202 0 8 chr6 54811235 54811364 -134468190 - FLAM_A SINE Alu -4 129 2 3240 208 38 55 chr6 54811364 54812768 -134466786 + L1ME1 LINE L1 4775 6149 -17 234 316 123 23 chr6 54813612 54813783 -134465771 + L2 LINE L2 2873 3060 -212 226 231 19 0 chr6 54813786 54813838 -134465716 + L1M4 LINE L1 4708 4760 -1386 1260 146 0 10 chr6 54814876 54815100 -134464454 + AluJo SINE Alu 86 307 0 673 228 21 0 chr6 54815101 54815246 -134464308 - MIR SINE MIR -24 238 91 203 317 17 0 chr6 54815334 54815394 -134464160 - MIR SINE MIR -62 146 86 317 231 39 0 chr6 54815715 54815793 -134463761 + MIR3 SINE MIR 108 188 -20 2269 100 0 0 chr6 54817646 54817946 -134461608 + AluSx SINE Alu 2 301 -11 236 322 0 46 chr6 54818028 54818115 -134461439 + MIR SINE MIR 17 99 -109 2336 82 7 0 chr6 54819053 54819357 -134460197 + AluSq SINE Alu 1 306 -7 703 237 69 0 chr6 54819370 54819543 -134460011 + MIR SINE MIR 52 236 -26 214 239 147 46 chr6 54819560 54819669 -134459885 - MIR SINE MIR -67 141 22 1090 139 96 24 chr6 54819882 54820091 -134459463 + MLT1C LTR MaLR 1 224 -243 2146 115 0 13 chr6 54820538 54820850 -134458704 - AluSx SINE Alu 0 312 5 1101 204 5 23 chr6 54821278 54821498 -134458056 - MER20 DNA MER1_type -3 216 1 378 0 0 0 chr6 54821723 54821765 -134457789 + (CA)n Simple_repeat Simple_repeat 2 43 0 425 264 119 6 chr6 54822426 54822585 -134456969 - MIR SINE MIR -10 252 76 586 304 0 12 chr6 54822898 54823059 -134456495 + MIR SINE MIR 104 262 0 1113 176 0 38 chr6 54823182 54823420 -134456134 - AluJb SINE Alu -4 308 80 749 153 0 0 chr6 54823421 54823532 -134456022 + AluJo/FRAM SINE Alu 178 288 -24 404 263 131 7 chr6 54823536 54823673 -134455881 - L2 LINE L2 -17 3296 3143 1756 158 3 7 chr6 54824217 54824537 -134455017 - AluSx SINE Alu 0 312 7 228 293 50 10 chr6 54825706 54825805 -134453749 + MIR SINE MIR 77 179 -83 604 105 32 0 chr6 54826572 54826667 -134452887 + AluS SINE Alu 2 99 -213 284 256 68 45 chr6 54827105 54827238 -134452316 + MIR SINE MIR 18 153 -109 423 246 120 7 chr6 54827978 54828120 -134451434 + MIR SINE MIR 48 205 -57 2338 58 3 0 chr6 54831829 54832124 -134447430 + AluY SINE Alu 13 308 -3 287 244 35 104 chr6 54832222 54832337 -134447217 + MER102a DNA MER1_type 196 302 -28 2311 94 0 3 chr6 54832743 54833052 -134446502 - AluSx SINE Alu -4 308 1 375 282 15 50 chr6 54834070 54834354 -134445200 + CT-rich Low_complexity Low_complexity 1 273 0 2249 72 0 3 chr6 54834628 54834921 -134444633 - AluY SINE Alu -19 292 1 843 202 24 6 chr6 54836250 54836418 -134443136 + AluJo SINE Alu 121 291 -21 1773 130 32 29 chr6 54837912 54838220 -134441334 + AluSx SINE Alu 1 309 -3 454 251 256 5 chr6 54838704 54838907 -134440647 + MER112 DNA MER1_type 1 254 -6 1600 134 63 0 chr6 54839928 54840182 -134439372 + AluSx SINE Alu 25 294 -18 2090 119 3 0 chr6 54840184 54840478 -134439076 + AluSp SINE Alu 1 295 -18 1682 145 69 0 chr6 54840480 54840756 -134438798 + AluSx SINE Alu 1 295 -17 2281 96 0 0 chr6 54840758 54841061 -134438493 + AluSx SINE Alu 1 303 -9 789 173 0 8 chr6 54841266 54841393 -134438161 - FLAM_C SINE Alu -16 127 2 300 240 40 47 chr6 54841395 54841545 -134438009 - L1M4 LINE L1 -853 5293 5145 2543 48 0 10 chr6 54841660 54841972 -134437582 - AluY SINE Alu -2 309 1 925 135 27 0 chr6 54842013 54842161 -134437393 - AluSg/x SINE Alu -7 303 152 1058 153 18 0 chr6 54842257 54842420 -134437134 - AluSp SINE Alu -147 166 1 273 254 73 124 chr6 54842422 54842689 -134436865 - L1M4 LINE L1 -1155 4991 4755 1830 139 9 22 chr6 54842689 54843005 -134436549 - AluJb SINE Alu 0 312 1 273 254 73 124 chr6 54843005 54843189 -134436365 - L1M4 LINE L1 -1391 4755 4563 1870 146 7 3 chr6 54843198 54843492 -134436062 - AluJb SINE Alu -17 295 1 838 194 0 7 chr6 54843535 54843690 -134435864 + FRAM SINE Alu 7 160 -16 2229 115 0 0 chr6 54843810 54844122 -134435432 - AluSx SINE Alu 0 312 1 196 322 148 9 chr6 54845215 54845330 -134434224 - MIR SINE MIR -6 256 126 236 236 69 0 chr6 54845703 54845775 -134433779 + L2 LINE L2 3180 3256 -16 2091 108 3 7 chr6 54846978 54847275 -134432279 - AluSq SINE Alu -17 296 1 487 307 137 15 chr6 54847395 54847600 -134431954 + MIR SINE MIR 1 230 -32 359 196 350 0 chr6 54847608 54847705 -134431849 + FLAM_C SINE Alu 2 132 -1 203 231 0 0 chr6 54847836 54847875 -134431679 - MIR SINE MIR -61 147 109 217 321 163 17 chr6 54848070 54848310 -134431244 - L2 LINE L2 -50 3222 2948 296 122 0 41 chr6 54848552 54848601 -134430953 - Tigger7 DNA MER2_type -476 74 28 207 0 0 0 chr6 54848700 54848723 -134430831 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2338 62 0 0 chr6 54848731 54849020 -134430534 - AluY SINE Alu -22 289 1 1019 126 33 65 chr6 54849042 54849206 -134430348 - L1MA8 LINE L1 0 6291 6134 2184 91 3 3 chr6 54849206 54849503 -134430051 - AluSx SINE Alu -15 297 1 1019 126 33 65 chr6 54849503 54849552 -134430002 - L1MA8 LINE L1 -157 6134 6085 33 43 0 0 chr6 54849611 54849658 -134429896 + AT_rich Low_complexity Low_complexity 1 47 0 377 129 81 0 chr6 54849658 54849720 -134429834 - FLAM SINE Alu -3 130 64 693 113 10 0 chr6 54850665 54850762 -134428792 + AluS SINE Alu 2 99 -214 520 230 66 33 chr6 54852250 54852353 -134427201 + MIR SINE MIR 37 135 -127 2203 98 7 0 chr6 54852353 54852649 -134426905 + AluSx SINE Alu 15 312 0 520 230 66 33 chr6 54852649 54852768 -134426786 + MIR SINE MIR 135 261 -1 537 264 190 0 chr6 54853039 54853255 -134426299 - MIR SINE MIR 0 262 6 765 231 181 0 chr6 54853439 54853655 -134425899 + MIR SINE MIR 8 262 0 637 123 0 53 chr6 54853666 54853682 -134425872 - AluJo/FRAM SINE Alu 0 312 297 1856 143 0 37 chr6 54853682 54854004 -134425550 - AluJo SINE Alu -2 310 1 637 123 0 53 chr6 54854004 54854101 -134425453 - AluJo/FRAM SINE Alu -15 297 205 180 0 0 0 chr6 54854141 54854161 -134425393 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 906 193 0 0 chr6 54854164 54854325 -134425229 - AluJb SINE Alu -18 294 134 2133 114 7 0 chr6 54854326 54854624 -134424930 - AluSx SINE Alu -12 300 1 771 136 8 0 chr6 54854624 54854749 -134424805 + LTR56 LTR ERV1 320 445 0 542 155 243 0 chr6 54854968 54855071 -134424483 - FLAM_A SINE Alu -5 128 1 1492 182 234 14 chr6 54855914 54856332 -134423222 - LTR10A LTR ERV1 -99 510 1 517 199 14 75 chr6 54856333 54856479 -134423075 - LTR10A-int LTR ERV1 -2 6647 6511 2104 122 0 10 chr6 54856596 54856907 -134422647 - AluSx SINE Alu -3 309 2 821 248 39 5 chr6 54858116 54858322 -134421232 - MIR SINE MIR -1 261 49 2031 92 68 0 chr6 54858802 54859083 -134420471 + AluSx SINE Alu 1 300 -12 796 91 5 51 chr6 54859329 54859560 -134419994 + (TG)n Simple_repeat Simple_repeat 1 220 0 239 233 0 33 chr6 54859864 54859924 -134419630 - MIR SINE MIR -66 142 85 181 250 0 0 chr6 54860122 54860162 -134419392 + MIR SINE MIR 24 63 -199 1207 216 151 36 chr6 54860188 54860604 -134418950 - MER4C LTR ERV1 -1 464 1 1993 99 7 11 chr6 54860700 54861016 -134418538 - AluSx SINE Alu 0 317 3 417 280 93 55 chr6 54861016 54861252 -134418302 - L2 LINE L2 -106 3207 2963 1207 248 127 45 chr6 54861276 54861813 -134417741 + MER34C LTR ERV1 5 585 0 775 139 0 97 chr6 54862254 54862398 -134417156 + AluJb SINE Alu 9 138 -174 1443 186 19 13 chr6 54862398 54862705 -134416849 + AluSx SINE Alu 1 309 -3 1103 151 131 28 chr6 54862708 54862960 -134416594 - LTR56 LTR ERV1 -133 312 35 2037 89 4 7 chr6 54863062 54863343 -134416211 - AluSx SINE Alu -32 280 1 1595 164 3 39 chr6 54863345 54863656 -134415898 - AluJo SINE Alu -12 300 1 3080 191 46 0 chr6 54864631 54865171 -134414383 - MLT1F1 LTR MaLR -2 565 1 826 172 8 0 chr6 54865968 54866102 -134413452 + AluJo SINE Alu 1 135 -177 1927 143 0 0 chr6 54866206 54866499 -134413055 + AluSx SINE Alu 1 293 -19 891 300 35 60 chr6 54867872 54868070 -134411484 + L2 LINE L2 2894 3096 -217 2073 125 0 3 chr6 54868070 54868383 -134411171 - AluSx SINE Alu 0 312 1 891 300 35 60 chr6 54868383 54868614 -134410940 + L2 LINE L2 3096 3312 -1 3062 148 37 114 chr6 54868626 54868896 -134410658 + L1MD2 LINE L1 5615 5904 -455 893 149 0 15 chr6 54868896 54869030 -134410524 + FLAM_C SINE Alu 2 133 0 3062 148 37 114 chr6 54869030 54869113 -134410441 + L1MD2 LINE L1 5904 5992 -367 2170 118 0 0 chr6 54869113 54869419 -134410135 - AluSx SINE Alu -6 306 1 3062 148 37 114 chr6 54869419 54869697 -134409857 + L1MD2 LINE L1 5992 6290 -69 1890 155 0 0 chr6 54869697 54869994 -134409560 + AluJb SINE Alu 1 297 -15 2160 98 10 3 chr6 54869994 54870299 -134409255 + AluSq SINE Alu 1 308 -5 3062 148 37 114 chr6 54870299 54870471 -134409083 + L1MD2 LINE L1 6288 6359 0 2183 119 3 0 chr6 54871660 54871970 -134407584 - AluSx SINE Alu -1 311 1 1066 192 42 9 chr6 54872049 54872263 -134407291 - AluJb SINE Alu -20 292 72 281 226 110 10 chr6 54872321 54872481 -134407073 - MIR SINE MIR -29 233 23 423 238 9 19 chr6 54872646 54872751 -134406803 - L2 LINE L2 0 3313 3210 1604 149 3 53 chr6 54872809 54873110 -134406444 + AluJo SINE Alu 2 287 -25 369 247 96 34 chr6 54873114 54873260 -134406294 - MER103 DNA DNA -3 163 9 793 138 17 0 chr6 54873484 54873600 -134405954 - AluJb SINE Alu -14 298 181 402 250 86 0 chr6 54874103 54874231 -134405323 + MIR SINE MIR 48 186 -76 184 349 0 0 chr6 54874313 54874379 -134405175 - L2 LINE L2 -3 3269 3204 1986 117 10 23 chr6 54875488 54875797 -134403757 + AluJo SINE Alu 1 305 -7 897 142 0 8 chr6 54875797 54875931 -134403623 + FLAM_C SINE Alu 1 133 0 1564 88 8 80 chr6 54875944 54876193 -134403361 + AluSg/x SINE Alu 69 299 -13 1442 196 72 0 chr6 54876395 54876671 -134402883 + AluJb SINE Alu 1 296 -16 721 273 64 27 chr6 54877237 54877534 -134402020 - L2 LINE L2 -1 3312 3005 219 296 148 9 chr6 54877551 54877659 -134401895 - L2 LINE L2 -1 3312 3190 265 330 34 0 chr6 54877790 54877878 -134401676 - L2 LINE L2 0 3272 3182 26 23 0 23 chr6 54878233 54878251 -134401303 + AT_rich Low_complexity Low_complexity 1 18 -25 1815 134 0 30 chr6 54878251 54878550 -134401004 - AluJo SINE Alu -22 290 1 26 23 0 23 chr6 54878550 54878575 -134400979 + AT_rich Low_complexity Low_complexity 18 43 0 2189 114 0 0 chr6 54878647 54878944 -134400610 + AluSg SINE Alu 1 297 -13 2052 128 0 34 chr6 54878951 54879272 -134400282 + AluSx SINE Alu 1 310 -2 672 187 0 58 chr6 54879309 54879448 -134400106 + FLAM_C SINE Alu 3 133 0 2361 83 0 0 chr6 54880103 54880404 -134399150 - AluSx SINE Alu -11 301 1 181 268 0 0 chr6 54880822 54880863 -134398691 + L3b LINE CR1 1342 1382 -201 537 215 81 86 chr6 54881363 54881496 -134398058 + MIR SINE MIR 72 205 -57 1788 163 3 0 chr6 54881496 54881790 -134397764 + AluJb SINE Alu 2 296 -16 537 215 81 86 chr6 54881790 54881842 -134397712 + MIR SINE MIR 205 256 -6 509 280 196 5 chr6 54883129 54883318 -134396236 + MIR SINE MIR 36 260 -2 215 263 136 17 chr6 54885801 54885919 -134393635 + MIR3 SINE MIR 75 206 -2 185 277 21 0 chr6 54937881 54937928 -134341626 - MER5B DNA MER1_type -36 142 95 252 152 29 114 chr6 54938251 54938321 -134341233 - MER53 DNA DNA -91 98 38 2457 47 0 3 chr6 54938321 54938620 -134340934 - AluY SINE Alu -13 298 1 252 152 29 114 chr6 54938620 54938654 -134340900 - MER53 DNA DNA -151 38 3 467 326 139 0 chr6 54938799 54938971 -134340583 - MER91A DNA MER1_type 0 196 1 268 336 88 0 chr6 54938971 54939108 -134340446 - L2 LINE L2 -896 2418 2270 1647 116 19 186 chr6 54939613 54940027 -134339527 + MER7A DNA MER2_type 4 346 0 21 0 0 0 chr6 54940046 54940067 -134339487 + AT_rich Low_complexity Low_complexity 1 21 0 433 177 0 0 chr6 54940384 54940463 -134339091 + Alu SINE Alu 234 312 0 2338 97 0 0 chr6 54940473 54940784 -134338770 + AluSx SINE Alu 1 311 -1 2211 121 0 6 chr6 54941228 54941543 -134338011 + AluSq SINE Alu 1 313 0 216 158 18 35 chr6 54942340 54942397 -134337157 + (CTG)n Simple_repeat Simple_repeat 3 58 0 205 196 0 43 chr6 54943045 54943091 -134336463 + L2 LINE L2 3262 3305 -8 2307 58 24 0 chr6 54943641 54943936 -134335618 + AluSp SINE Alu 1 302 -11 200 114 45 0 chr6 54944647 54944691 -134334863 + (CGGGG)n Simple_repeat Simple_repeat 1 46 0 1584 192 0 21 chr6 54945057 54945343 -134334211 - AluJo SINE Alu -31 281 2 2276 89 0 38 chr6 54945393 54945709 -134333845 + AluSg SINE Alu 1 304 -6 536 135 0 45 chr6 54945718 54945734 -134333820 - MER96B DNA MER1_type? -311 106 91 1833 152 0 13 chr6 54945734 54946044 -134333510 - AluJb SINE Alu -6 306 1 536 135 0 45 chr6 54946044 54946138 -134333416 - MER96B DNA MER1_type? -326 91 1 267 205 8 51 chr6 54948285 54948402 -134331152 + G-rich Low_complexity Low_complexity 2 113 0 431 268 87 8 chr6 54949406 54949533 -134330021 + MIR SINE MIR 56 192 -70 2257 104 0 3 chr6 54950084 54950392 -134329162 + AluSq SINE Alu 1 307 -6 309 208 0 42 chr6 54950477 54950549 -134329005 + L2 LINE L2 3204 3272 0 243 325 18 41 chr6 54951659 54951828 -134327726 + CT-rich Low_complexity Low_complexity 2 166 0 315 273 66 25 chr6 54952871 54952992 -134326562 + MIR SINE MIR 69 194 -68 191 274 20 0 chr6 54954407 54954458 -134325096 - L3b LINE CR1 -135 1448 1397 248 309 100 36 chr6 54955777 54956026 -134323528 - L2 LINE L2 -338 2976 2712 2091 114 17 0 chr6 54956494 54956784 -134322770 - AluSq SINE Alu -18 295 1 215 185 56 19 chr6 54957099 54957153 -134322401 - MIR SINE MIR -112 150 95 639 189 101 12 chr6 54957390 54957559 -134321995 - L1ME3 LINE L1 -2 6160 5977 228 233 0 0 chr6 54958703 54958763 -134320791 + (TCTG)n Simple_repeat Simple_repeat 3 62 0 182 307 11 114 chr6 54960850 54960938 -134318616 + MIR3 SINE MIR 99 177 -31 2203 89 3 32 chr6 54961434 54961750 -134317804 - AluSp SINE Alu -6 307 1 1333 99 22 0 chr6 54961789 54961971 -134317583 - AluSg SINE Alu -124 186 1 266 292 85 23 chr6 54963177 54963307 -134316247 - MIR SINE MIR -21 241 104 245 309 167 44 chr6 54964113 54964365 -134315189 + L2 LINE L2 2121 2403 -911 418 88 0 0 chr6 54964484 54964541 -134315013 + Alu SINE Alu 244 300 -12 1028 278 91 96 chr6 54964584 54964628 -134314926 + L1M4 LINE L1 2610 2653 -3493 2432 71 3 0 chr6 54964628 54964925 -134314629 + AluSp SINE Alu 1 298 -15 1028 278 91 96 chr6 54964925 54965026 -134314528 + L1M4 LINE L1 2653 2753 -3393 1977 151 0 7 chr6 54965026 54965330 -134314224 + AluJb SINE Alu 1 302 -10 1028 278 91 96 chr6 54965330 54965662 -134313892 + L1M4 LINE L1 2753 3085 -3061 2204 100 0 25 chr6 54965662 54965981 -134313573 + AluSx SINE Alu 1 311 -1 1028 278 91 96 chr6 54965981 54966092 -134313462 + L1M4 LINE L1 3085 3199 -2947 2026 109 23 7 chr6 54966092 54966396 -134313158 - AluSg SINE Alu 0 310 2 1028 278 91 96 chr6 54966396 54966431 -134313123 + L1M4 LINE L1 3199 3233 -2913 921 179 0 7 chr6 54966443 54966594 -134312960 + AluJo SINE Alu 3 152 -160 1534 150 63 43 chr6 54966650 54966950 -134312604 + AluJo SINE Alu 1 306 -6 647 304 78 16 chr6 54966952 54967337 -134312217 + L1M4 LINE L1 4037 4445 -1701 1275 223 73 34 chr6 54967759 54967912 -134311642 - MER58B DNA MER1_type -2080 340 195 2142 107 3 0 chr6 54967912 54968210 -134311344 + AluSx SINE Alu 1 299 -13 1275 223 73 34 chr6 54968210 54968383 -134311171 - MER58B DNA MER1_type -2225 195 1 2297 90 3 6 chr6 54968508 54968819 -134310735 - AluSp SINE Alu -3 310 1 2230 100 7 0 chr6 54969289 54969590 -134309964 - AluSg SINE Alu -7 303 1 2087 114 27 7 chr6 54969593 54969891 -134309663 - AluSq SINE Alu -8 305 2 220 250 92 13 chr6 54973161 54973237 -134306317 - MER5A DNA MER1_type -99 90 9 1390 191 68 7 chr6 54973935 54974213 -134305341 + AluJb SINE Alu 1 295 -17 277 314 0 21 chr6 54975153 54975327 -134304227 + GA-rich Low_complexity Low_complexity 1 170 0 2288 85 0 7 chr6 54977351 54977657 -134301897 - AluY SINE Alu -7 304 1 640 193 170 0 chr6 54977701 54977836 -134301718 - AluSx SINE Alu -129 183 26 29 0 0 0 chr6 54978971 54979000 -134300554 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr6 54981873 54981894 -134297660 + (TC)n Simple_repeat Simple_repeat 1 21 0 23 54 0 0 chr6 54982315 54982352 -134297202 + GC_rich Low_complexity Low_complexity 1 37 0 25 99 0 0 chr6 54982411 54982492 -134297062 + GC_rich Low_complexity Low_complexity 1 81 0 329 328 75 46 chr6 54982778 54983126 -134296428 + L2 LINE L2 2878 3235 -78 237 180 0 20 chr6 54984359 54984409 -134295145 - L3 LINE CR1 -5 1572 1524 394 265 63 80 chr6 54984497 54984735 -134294819 + MER102b DNA MER1_type 99 332 -9 284 307 57 0 chr6 54984750 54984838 -134294716 - MIR SINE MIR -100 108 16 531 31 0 0 chr6 54985687 54985752 -134293802 + (CA)n Simple_repeat Simple_repeat 2 66 0 701 316 103 10 chr6 54985932 54986223 -134293331 + L2 LINE L2 2996 3313 0 318 332 68 40 chr6 54987074 54987324 -134292230 + L2 LINE L2 2981 3237 -35 24 0 0 0 chr6 54990302 54990326 -134289228 + GC_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr6 54990489 54990521 -134289033 + GC_rich Low_complexity Low_complexity 1 32 0 303 130 0 0 chr6 54990604 54990658 -134288896 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 1632 107 148 8 chr6 54990742 54991005 -134288549 - AluSx SINE Alu 0 302 3 1976 117 23 29 chr6 54992402 54992710 -134286844 + AluSx SINE Alu 1 306 -6 331 195 69 0 chr6 54992727 54992814 -134286740 - MIR SINE MIR -109 153 61 233 385 9 0 chr6 54993658 54993767 -134285787 + L3b LINE CR1 1324 1433 -150 298 291 35 17 chr6 54994103 54994243 -134285311 + MIR SINE MIR 27 169 -78 185 265 221 44 chr6 54994310 54994446 -134285108 + L2 LINE L2 3149 3308 -5 596 253 7 47 chr6 54994594 54994744 -134284810 - MIR3 SINE MIR -34 174 31 240 192 19 58 chr6 54995375 54995479 -134284075 + C-rich Low_complexity Low_complexity 1 100 0 257 176 14 0 chr6 54995641 54995715 -134283839 + (CGG)n Simple_repeat Simple_repeat 1 75 0 29 110 0 0 chr6 54995819 54995946 -134283608 + GC_rich Low_complexity Low_complexity 1 127 0 252 0 0 0 chr6 54996741 54996769 -134282785 + (TG)n Simple_repeat Simple_repeat 1 28 0 247 312 104 0 chr6 54996842 54996967 -134282587 - L2 LINE L2 -8 3264 3127 938 234 24 19 chr6 54998546 54998751 -134280803 - MIR SINE MIR -28 234 29 1331 177 102 25 chr6 54998793 54999076 -134280478 + AluJb SINE Alu 1 305 -7 225 345 124 12 chr6 54999098 54999262 -134280292 - MIR SINE MIR -54 208 30 2482 68 0 0 chr6 54999697 55000008 -134279546 + AluY SINE Alu 1 311 0 22 0 0 0 chr6 55000941 55000963 -134278591 + GC_rich Low_complexity Low_complexity 1 22 0 33 43 0 0 chr6 55001053 55001100 -134278454 + GC_rich Low_complexity Low_complexity 1 47 0 222 62 0 0 chr6 55003731 55003763 -134275791 + (CA)n Simple_repeat Simple_repeat 2 33 0 432 0 0 0 chr6 55004609 55004657 -134274897 + (TG)n Simple_repeat Simple_repeat 2 49 0 413 183 162 96 chr6 55005280 55005477 -134274077 + MER112 DNA MER1_type 49 258 -2 439 268 117 34 chr6 55005481 55005871 -134273683 + MLT1L LTR MaLR 156 604 -11 252 200 0 0 chr6 55005882 55005937 -134273617 + (TG)n Simple_repeat Simple_repeat 2 56 0 458 263 142 5 chr6 55006100 55006253 -134273301 - MER112 DNA MER1_type -25 235 46 2316 106 0 0 chr6 55006253 55006545 -134273009 - AluSx SINE Alu -20 292 1 458 263 142 5 chr6 55006545 55006596 -134272958 - MER112 DNA MER1_type -214 46 3 339 241 37 86 chr6 55006630 55006792 -134272762 + MIR SINE MIR 47 200 -62 285 299 112 55 chr6 55007598 55007651 -134271903 - MIR SINE MIR -7 255 206 2654 68 0 0 chr6 55007651 55007962 -134271592 - AluY SINE Alu 0 311 1 285 299 112 55 chr6 55007962 55008158 -134271396 - MIR SINE MIR -56 206 1 470 347 61 41 chr6 55008406 55008749 -134270805 + L2 LINE L2 1046 1395 -1919 894 301 173 28 chr6 55008937 55010070 -134269484 + L2 LINE L2 1755 3052 -261 515 132 198 8 chr6 55010140 55010261 -134269293 - MER53 DNA DNA 0 189 46 834 173 0 14 chr6 55010262 55010401 -134269153 - FRAM SINE Alu -24 152 16 409 102 0 0 chr6 55010405 55010464 -134269090 - MER53 DNA DNA -130 59 1 306 326 171 0 chr6 55010489 55010618 -134268936 + L2 LINE L2 3117 3267 -5 401 165 87 170 chr6 55011722 55011940 -134267614 - L2 LINE L2 0 3313 3114 448 322 55 0 chr6 55012898 55013044 -134266510 + MIR SINE MIR 78 231 -31 573 265 53 68 chr6 55013075 55013339 -134266215 - MIR SINE MIR -1 261 2 747 163 20 102 chr6 55013472 55013572 -134265982 - Charlie5 DNA MER1_type 0 2585 2478 2245 136 0 0 chr6 55013572 55013882 -134265672 + AluSx SINE Alu 1 310 -2 747 163 20 102 chr6 55013882 55013902 -134265652 - Charlie5 DNA MER1_type -107 2478 2458 2310 85 31 0 chr6 55013902 55014196 -134265358 - AluSq SINE Alu -10 303 1 747 163 20 102 chr6 55014196 55014320 -134265234 - Charlie5 DNA MER1_type -127 2458 2360 526 223 36 14 chr6 55015062 55015201 -134264353 + MIR SINE MIR 43 184 -78 239 317 131 58 chr6 55016703 55017409 -134262145 + L2 LINE L2 2418 3225 -47 225 222 127 0 chr6 55017818 55017881 -134261673 + MLT1K LTR MaLR 509 579 -9 216 0 0 0 chr6 55018166 55018190 -134261364 + (A)n Simple_repeat Simple_repeat 1 24 0 833 154 0 0 chr6 55018192 55018322 -134261232 + FLAM_C SINE Alu 3 132 -1 296 240 122 67 chr6 55018326 55018510 -134261044 - MIR SINE MIR -62 146 7 695 284 42 28 chr6 55019517 55019732 -134259822 + MIR SINE MIR 44 261 -1 457 281 19 31 chr6 55019742 55019902 -134259652 - MIR SINE MIR -48 214 57 529 253 165 7 chr6 55022825 55023019 -134256535 + L2 LINE L2 2923 3085 -228 1406 161 33 72 chr6 55023019 55023324 -134256230 - AluJo SINE Alu -19 293 1 529 253 165 7 chr6 55023324 55023414 -134256140 + L2 LINE L2 3085 3252 -61 2299 91 0 7 chr6 55023751 55024038 -134255516 - AluSc SINE Alu -24 285 1 345 212 0 0 chr6 55027262 55027328 -134252226 + L2 LINE L2 3232 3297 -16 337 274 96 7 chr6 55027721 55027856 -134251698 - MIR3 SINE MIR -18 190 44 384 333 102 5 chr6 55031371 55031587 -134247967 - MIR SINE MIR -12 250 14 778 328 52 9 chr6 55031659 55032004 -134247550 + L2 LINE L2 2346 2705 -609 2306 93 0 13 chr6 55032014 55032316 -134247238 + AluSq SINE Alu 1 298 -15 2152 131 0 7 chr6 55032486 55032791 -134246763 - AluSx SINE Alu -9 303 1 1365 223 151 16 chr6 55032874 55033358 -134246196 + MLT1H LTR MaLR 1 549 0 445 304 44 13 chr6 55033483 55033641 -134245913 + L2 LINE L2 2346 2508 -806 663 293 132 32 chr6 55033644 55033992 -134245562 + L2 LINE L2 2930 3312 -1 204 240 164 29 chr6 55034606 55034710 -134244844 - MIR3 SINE MIR -6 202 85 282 279 0 0 chr6 55034723 55034802 -134244752 + MIR SINE MIR 183 261 -1 182 283 200 7 chr6 55035546 55035691 -134243863 + L2 LINE L2 2895 3067 -205 203 229 0 82 chr6 55035760 55035821 -134243733 - L2 LINE L2 -75 3197 3142 207 286 0 0 chr6 55036556 55036605 -134242949 - MIR SINE MIR -61 147 99 244 171 0 0 chr6 55037355 55037396 -134242158 + L2 LINE L2 3250 3290 -23 * 430 227 92 34 chr6 55037394 55037513 -134242041 - L2 LINE L2 0 3313 3188 296 24 24 0 chr6 55037586 55037627 -134241927 + (TG)n Simple_repeat Simple_repeat 2 43 0 350 114 0 100 chr6 55037675 55037745 -134241809 - L2 LINE L2 0 3313 3251 2121 123 17 0 chr6 55038520 55038812 -134240742 - AluSp SINE Alu -16 297 1 1814 153 0 31 chr6 55039001 55039360 -134240194 - L1MB8 LINE L1 0 6178 5831 417 168 42 42 chr6 55040282 55040377 -134239177 - MER5A DNA MER1_type -86 103 9 475 191 0 11 chr6 55040825 55040919 -134238635 - AluJo SINE Alu -178 134 42 3062 70 49 0 chr6 55040958 55041343 -134238211 + SVA Other Other 981 1384 -2 510 154 22 0 chr6 55041343 55041434 -134238120 + MER58 DNA MER1_type 2328 2420 0 280 250 16 65 chr6 55041532 55041656 -134237898 - L1ME3A LINE L1 -88 6082 5965 2406 101 0 0 chr6 55041673 55041969 -134237585 - AluSq SINE Alu -17 296 1 2348 232 41 75 chr6 55042055 55043003 -134236551 - L1MC5 LINE L1 -430 7531 6616 975 287 69 29 chr6 55043018 55043467 -134236087 - L2 LINE L2 -565 2749 2283 460 118 0 0 chr6 55043471 55043539 -134236015 - AluSg/x SINE Alu -51 261 194 739 333 159 12 chr6 55043571 55043779 -134235775 - L2 LINE L2 -1607 1707 1531 2235 100 0 0 chr6 55043779 55044060 -134235494 + AluSx SINE Alu 24 304 -8 739 333 159 12 chr6 55044060 55044431 -134235123 - L2 LINE L2 -1783 1531 1043 902 306 80 21 chr6 55044698 55045038 -134234516 + L1MEc LINE L1 1508 1891 -4505 1936 152 3 7 chr6 55045038 55045335 -134234219 + AluJb SINE Alu 1 296 -16 902 306 80 21 chr6 55045335 55045520 -134234034 + L1MEc LINE L1 1891 2064 -4332 332 257 14 0 chr6 55045520 55045590 -134233964 + Charlie1 DNA MER1_type 1 71 -2690 * 606 143 36 9 chr6 55045588 55045700 -134233854 + Charlie1 DNA MER1_type 2343 2457 -304 2005 141 7 7 chr6 55045702 55046001 -134233553 + AluSx SINE Alu 1 299 -13 735 207 7 0 chr6 55046113 55046253 -134233301 - AluJb SINE Alu -170 142 2 2222 111 0 3 chr6 55046296 55046585 -134232969 + AluSx SINE Alu 10 297 -15 350 279 0 26 chr6 55046587 55046741 -134232813 + L1MEc LINE L1 2108 2257 -4139 * 1543 185 25 0 chr6 55046739 55047058 -134232496 + L1ME2 LINE L1 5612 5938 -226 2015 145 3 3 chr6 55047079 55047376 -134232178 - AluJb SINE Alu -15 297 1 1583 215 3 0 chr6 55047400 55047708 -134231846 - AluJo SINE Alu 0 309 1 2155 126 0 19 chr6 55047772 55048090 -134231464 - AluSx SINE Alu 0 312 1 1864 165 3 3 chr6 55048094 55048391 -134231163 - AluSx SINE Alu -15 297 1 450 321 93 39 chr6 55048707 55048893 -134230661 + L1MC4a LINE L1 5818 5992 -1816 2266 121 7 0 chr6 55048893 55049199 -134230355 + AluSq SINE Alu 2 309 -4 450 321 93 39 chr6 55049199 55049376 -134230178 + L1MC4a LINE L1 5992 6201 -1607 1059 216 81 0 chr6 55050303 55050539 -134229015 - MIR SINE MIR 0 262 8 462 293 117 31 chr6 55050598 55050743 -134228811 + MLT1J LTR MaLR 78 209 -302 8528 47 7 0 chr6 55050743 55051705 -134227849 - LTR5 LTR ERVK 0 969 1 462 293 117 31 chr6 55051705 55051885 -134227669 + MLT1J LTR MaLR 209 493 -18 287 300 244 17 chr6 55052105 55052335 -134227219 - L2 LINE L2 0 3272 2991 193 229 14 14 chr6 55053292 55053335 -134226219 + (TA)n Simple_repeat Simple_repeat 1 46 -24 1779 158 79 3 chr6 55053335 55053621 -134225933 + THE1A LTR MaLR 1 317 -38 2238 84 0 43 chr6 55053621 55053920 -134225634 - AluSc SINE Alu -23 286 1 1779 158 79 3 chr6 55053920 55053963 -134225591 + THE1A LTR MaLR 317 355 0 193 229 14 14 chr6 55053963 55053989 -134225565 + (TA)n Simple_repeat Simple_repeat 45 70 0 2298 119 0 0 chr6 55054439 55054751 -134224803 - AluSx SINE Alu 0 312 1 284 191 111 0 chr6 55054807 55054870 -134224684 - L1ME3A LINE L1 -7 6163 6094 235 135 0 0 chr6 55054898 55054945 -134224609 - L1MB3 LINE L1 -1 6179 6133 1149 105 12 6 chr6 55054947 55055119 -134224435 - AluSg/x SINE Alu -3 309 137 1303 162 43 11 chr6 55055120 55055395 -134224159 - L1MB3 LINE L1 -40 6143 5853 502 267 187 80 chr6 55056371 55056821 -134222733 + MLT1H LTR MaLR 52 549 0 354 263 105 13 chr6 55057358 55057510 -134222044 + MIR SINE MIR 84 249 -13 790 181 0 0 chr6 55057533 55057666 -134221888 - FLAM_A SINE Alu -4 138 6 2256 93 3 3 chr6 55057767 55058057 -134221497 + AluSx SINE Alu 1 290 -22 1479 91 0 5 chr6 55058086 55058273 -134221281 - AluSx SINE Alu -126 186 1 780 250 60 0 chr6 55059195 55059411 -134220143 - MIR SINE MIR -11 251 23 927 277 133 34 chr6 55059954 55060419 -134219135 - LTR33 LTR ERVL -10 511 1 436 283 80 5 chr6 55060823 55061010 -134218544 + MIR SINE MIR 7 207 -55 349 277 53 0 chr6 55061031 55061125 -134218429 + L2 LINE L2 3159 3257 -15 186 133 0 0 chr6 55062986 55063016 -134216538 + (CCCA)n Simple_repeat Simple_repeat 3 32 0 590 165 9 9 chr6 55063019 55063128 -134216426 - L2 LINE L2 0 3313 3205 1313 189 105 43 chr6 55063276 55063599 -134215955 + MER2 DNA MER2_type 1 343 -2 1956 113 16 52 chr6 55063599 55063909 -134215645 - AluSx SINE Alu -13 299 1 432 51 0 0 chr6 55063950 55064009 -134215545 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 569 243 122 12 chr6 55064149 55064591 -134214963 + MLT1G3 LTR MaLR 4 553 -2 245 177 0 0 chr6 55064638 55064700 -134214854 + L1ME4a LINE L1 6060 6121 0 297 0 0 0 chr6 55067086 55067119 -134212435 + (TG)n Simple_repeat Simple_repeat 1 33 0 425 251 83 67 chr6 55068458 55068646 -134210908 - L1ME LINE L1 -450 5671 5478 1323 186 62 38 chr6 55068701 55068991 -134210563 + AluJb SINE Alu 1 297 -15 598 309 98 52 chr6 55069058 55069080 -134210474 - L1ME LINE L1 -769 5377 5357 1650 204 7 0 chr6 55069080 55069379 -134210175 - AluJb SINE Alu -11 301 1 598 309 98 52 chr6 55069379 55069472 -134210082 - L1ME LINE L1 -789 5357 5270 4873 56 12 3 chr6 55069472 55070075 -134209479 + L1PA7 LINE L1 5544 6151 -3 598 309 98 52 chr6 55070075 55070579 -134208975 - L1ME LINE L1 -876 5270 4728 282 267 0 0 chr6 55070588 55070648 -134208906 + MIR SINE MIR 81 140 -68 2027 104 4 11 chr6 55070704 55070982 -134208572 - AluSx SINE Alu -14 298 23 1597 194 58 30 chr6 55071333 55071403 -134208151 + HsTC2 DNA Tc2 1281 1348 -550 1970 73 29 141 chr6 55071403 55071563 -134207991 + AluSg SINE Alu 7 111 -199 2064 107 0 0 chr6 55071563 55071833 -134207721 + AluSx SINE Alu 20 289 -23 1970 73 29 141 chr6 55071833 55072012 -134207542 + AluSg SINE Alu 111 308 -2 1597 194 58 30 chr6 55072012 55072373 -134207181 + HsTC2 DNA Tc2 1348 1900 2 725 237 120 25 chr6 55072375 55072649 -134206905 - L1ME LINE L1 -3123 3023 2724 211 277 169 15 chr6 55072809 55072939 -134206615 - MER5A DNA MER1_type 0 189 40 528 294 0 14 chr6 55073082 55073228 -134206326 - MER5A DNA MER1_type -39 150 7 245 308 0 0 chr6 55073466 55073531 -134206023 - MER2 DNA MER2_type -12 333 269 2251 123 3 0 chr6 55073539 55073847 -134205707 + AluSx SINE Alu 3 311 -1 1179 140 0 83 chr6 55073874 55074102 -134205452 - MER2 DNA MER2_type -135 210 2 324 94 0 19 chr6 55074473 55074526 -134205028 - L2 LINE L2 -1 3271 3220 2023 116 19 53 chr6 55074822 55075141 -134204413 - AluSx SINE Alu -4 308 1 600 265 22 16 chr6 55075148 55075333 -134204221 + MIR SINE MIR 74 259 -3 1103 218 40 0 chr6 55075641 55075889 -134203665 + MIR SINE MIR 3 260 -2 753 231 5 21 chr6 55076076 55076262 -134203292 - AluJo SINE Alu -11 301 119 225 188 126 126 chr6 55076372 55076451 -134203103 - L1ME4a LINE L1 -3 6118 6040 2546 62 0 3 chr6 55076451 55076758 -134202796 + AluY SINE Alu 1 306 -5 1633 143 72 4 chr6 55076765 55077070 -134202484 + AluJo SINE Alu 1 323 0 225 188 126 126 chr6 55077070 55077220 -134202334 - L1ME4a LINE L1 -86 6035 5880 3511 127 16 16 chr6 55077246 55077513 -134202041 - L1MC1 LINE L1 -18 6315 6049 1632 170 54 20 chr6 55077513 55077807 -134201747 - AluJb SINE Alu -7 305 2 3511 127 16 16 chr6 55077807 55078113 -134201441 - L1MC1 LINE L1 -283 6050 5742 354 312 9 0 chr6 55078262 55078371 -134201183 - L1MC1 LINE L1 -396 5725 5616 525 324 97 36 chr6 55078720 55079084 -134200470 + L2 LINE L2 2234 2647 -667 1964 245 65 26 chr6 55079084 55079652 -134199902 - MLT1E LTR MaLR -3 590 1 525 324 97 36 chr6 55079652 55079864 -134199690 + L2 LINE L2 2647 2845 -469 1967 135 4 0 chr6 55080088 55080396 -134199158 - AluSq SINE Alu 0 309 1 293 143 20 0 chr6 55080419 55080468 -134199086 - FLAM SINE Alu -12 121 72 244 322 11 33 chr6 55080533 55080623 -134198931 + MLT1K LTR MaLR 197 284 -304 1769 151 30 43 chr6 55081244 55081615 -134197939 - L1MB8 LINE L1 0 6178 5813 3370 128 19 63 chr6 55081618 55081672 -134197882 - L1MB4 LINE L1 -6 6174 6119 1537 170 17 67 chr6 55081672 55081972 -134197582 - AluJb SINE Alu -24 288 4 3370 128 19 63 chr6 55081972 55082287 -134197267 - L1MB4 LINE L1 -61 6119 5842 2000 145 24 0 chr6 55082287 55082584 -134196970 - AluJb SINE Alu -8 304 1 3370 128 19 63 chr6 55082584 55082844 -134196710 - L1MB4 LINE L1 -338 5842 5572 727 168 0 0 chr6 55082860 55082973 -134196581 - AluSq/x SINE Alu -190 122 10 201 273 0 0 chr6 55083616 55083660 -134195894 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 367 272 40 16 chr6 55083751 55083876 -134195678 - MIR SINE MIR -115 147 20 2419 65 7 0 chr6 55085557 55085850 -134193704 - AluSp SINE Alu -17 296 2 1715 156 3 42 chr6 55085852 55086159 -134193395 - AluJb SINE Alu -17 295 1 763 162 11 17 chr6 55086309 55086488 -134193066 + CT-rich Low_complexity Low_complexity 3 180 0 1948 203 87 30 chr6 55086695 55087290 -134192264 - L1MC5 LINE L1 -36 7925 7297 2136 116 30 0 chr6 55087427 55087803 -134191751 - AluSx SINE Alu 0 385 1 1385 145 212 34 chr6 55087934 55088198 -134191356 - MER6A DNA MER2_type -482 383 49 1872 150 31 3 chr6 55088198 55088485 -134191069 - AluJb SINE Alu -15 297 3 1385 145 212 34 chr6 55088485 55088545 -134191009 - MER6A DNA MER2_type -816 49 1 2468 165 30 15 chr6 55088559 55089019 -134190535 - MLT1C LTR MaLR 0 467 1 23 33 0 0 chr6 55089104 55089134 -134190420 + AT_rich Low_complexity Low_complexity 1 30 0 550 153 10 0 chr6 55089671 55089769 -134189785 + MER91B DNA MER1_type 92 190 0 366 244 111 29 chr6 55089852 55090024 -134189530 - MLT1K LTR MaLR -7 581 396 1550 82 30 4 chr6 55090128 55090359 -134189195 + L1MA3 LINE L1 6067 6303 -2 250 217 130 0 chr6 55090865 55090934 -134188620 - MIR SINE MIR -94 168 91 423 270 66 15 chr6 55091124 55091261 -134188293 - MIR SINE MIR 0 262 119 212 125 50 0 chr6 55092096 55092136 -134187418 + (CCCCG)n Simple_repeat Simple_repeat 4 45 0 422 277 72 12 chr6 55092826 55092992 -134186562 + MIR SINE MIR 81 256 -6 250 282 0 14 chr6 55093037 55093108 -134186446 + L2 LINE L2 3243 3312 -1 253 247 51 85 chr6 55094445 55094636 -134184918 + MIR SINE MIR 26 212 -50 38 68 0 0 chr6 55094815 55094888 -134184666 + AT_rich Low_complexity Low_complexity 1 73 0 365 125 118 0 chr6 55094888 55095171 -134184383 + (TA)n Simple_repeat Simple_repeat 1 316 0 2450 77 0 0 chr6 55095211 55095511 -134184043 - AluY SINE Alu -11 300 1 521 212 15 23 chr6 55095704 55095836 -134183718 - AluSq/x SINE Alu -171 141 11 475 270 87 58 chr6 55096132 55096474 -134183080 - MLT1I LTR MaLR 0 409 67 2405 88 3 0 chr6 55096885 55097180 -134182374 - AluSq SINE Alu -17 296 1 376 331 51 11 chr6 55097191 55097366 -134182188 + MER5A DNA MER1_type 8 189 0 366 313 134 14 chr6 55097544 55097761 -134181793 - MIR SINE MIR 0 262 20 1741 109 0 0 chr6 55097860 55098081 -134181473 - AluSx SINE Alu -28 284 64 33 0 0 0 chr6 55098457 55098490 -134181064 + AT_rich Low_complexity Low_complexity 1 33 0 2272 60 0 0 chr6 55099656 55099924 -134179630 - AluY SINE Alu -14 297 30 1449 161 0 32 chr6 55100681 55100963 -134178591 + AluSx SINE Alu 43 316 0 1983 133 3 3 chr6 55100968 55101254 -134178300 + AluJb SINE Alu 1 286 -26 288 0 0 0 chr6 55101259 55101291 -134178263 + (TAAAA)n Simple_repeat Simple_repeat 5 36 0 188 252 29 78 chr6 55101680 55101783 -134177771 - L2 LINE L2 -2 3311 3214 1871 166 3 22 chr6 55102390 55102704 -134176850 + AluJo SINE Alu 1 308 -4 1736 338 80 41 chr6 55102857 55103042 -134176512 - L1MEc LINE L1 -5265 1131 955 2502 56 0 0 chr6 55103042 55103330 -134176224 + AluY SINE Alu 1 288 -23 1736 338 80 41 chr6 55103330 55103489 -134176065 - L1MEc LINE L1 -5441 955 804 200 0 100 0 chr6 55103489 55103519 -134176035 + T-rich Low_complexity Low_complexity 3 35 0 2189 106 3 0 chr6 55103522 55103806 -134175748 - AluSc SINE Alu -24 285 1 1736 338 80 41 chr6 55103806 55104502 -134175052 - L1MEc LINE L1 -5593 803 45 860 246 72 59 chr6 55106187 55106579 -134172975 - LTR33 LTR ERVL 0 521 135 2105 115 28 0 chr6 55106579 55106867 -134172687 + AluSx SINE Alu 5 300 -12 2181 136 0 0 chr6 55106871 55107165 -134172389 + AluSx SINE Alu 1 294 -18 860 246 72 59 chr6 55107165 55107239 -134172315 - LTR33 LTR ERVL -388 133 44 2349 98 0 3 chr6 55107568 55107875 -134171679 + AluSg SINE Alu 2 307 -3 753 213 64 52 chr6 55108247 55108576 -134170978 - L1MC4 LINE L1 0 8042 7710 2291 154 0 11 chr6 55108632 55109001 -134170553 - MLT1A1 LTR MaLR 0 365 1 2164 121 3 0 chr6 55109537 55109842 -134169712 + AluSq SINE Alu 1 306 -7 2417 75 0 31 chr6 55110356 55110695 -134168859 + AluY SINE Alu 1 329 0 1688 106 82 4 chr6 55112296 55112551 -134167003 + AluSx SINE Alu 1 275 -37 454 212 73 0 chr6 55113608 55113745 -134165809 - L1ME4a LINE L1 -11 6110 5964 21 0 0 0 chr6 55113745 55113766 -134165788 + AT_rich Low_complexity Low_complexity 1 21 0 1836 183 0 3 chr6 55114243 55114533 -134165021 - AluJo SINE Alu -20 292 4 501 222 0 0 chr6 55114682 55114781 -134164773 + FLAM_A SINE Alu 4 102 -40 417 121 0 0 chr6 55114783 55114841 -134164713 + FLAM_A SINE Alu 63 120 -22 441 91 0 0 chr6 55115078 55115144 -134164410 + L1MA4A LINE L1 5715 5780 -523 1642 166 7 4 chr6 55115144 55115422 -134164132 + AluJb SINE Alu 1 279 -33 252 0 0 0 chr6 55115530 55115558 -134163996 + (CA)n Simple_repeat Simple_repeat 2 29 0 2789 112 69 4 chr6 55115558 55116022 -134163532 + L1MA4A LINE L1 5797 6290 -13 517 291 31 40 chr6 55116029 55116225 -134163329 + MIR SINE MIR 37 231 -31 256 298 32 65 chr6 55116225 55116349 -134163205 + MER5A DNA MER1_type 2 121 -68 243 231 14 163 chr6 55116260 55116407 -134163147 - MER5A DNA MER1_type -22 167 43 * 583 287 56 5 chr6 55116660 55116855 -134162699 - MIR SINE MIR -54 208 4 3221 181 85 67 chr6 55117102 55117933 -134161621 - MER21B LTR ERV1 -11 852 7 4233 204 91 95 chr6 55119524 55119614 -134159940 - L1M4c LINE L1 -4833 2022 1933 1554 177 47 0 chr6 55119614 55119891 -134159663 - AluJo SINE Alu -22 290 1 4233 204 91 95 chr6 55119891 55120290 -134159264 - L1M4c LINE L1 -4922 1933 1534 2282 81 14 0 chr6 55120290 55120587 -134158967 - AluY SINE Alu -10 301 1 4233 204 91 95 chr6 55120587 55121022 -134158532 - L1M4c LINE L1 -5321 1534 1099 2037 138 20 0 chr6 55121022 55121319 -134158235 - AluSx SINE Alu -9 303 1 4233 204 91 95 chr6 55121319 55122294 -134157260 - L1M4c LINE L1 -5756 1099 200 6040 16 0 0 chr6 55122294 55122978 -134156576 - L1PA3 LINE L1 -3 6152 5469 4233 204 91 95 chr6 55122978 55123168 -134156386 - L1M4c LINE L1 -6655 200 11 323 256 56 56 chr6 55123251 55123376 -134156178 - HAL1b LINE L1 -38 1310 1186 528 322 87 23 chr6 55123523 55123950 -134155604 - L1ME LINE L1 -344 5777 5318 29 28 0 0 chr6 55124751 55124787 -134154767 + AT_rich Low_complexity Low_complexity 1 36 0 1612 170 46 11 chr6 55124790 55125072 -134154482 - AluJo SINE Alu -20 292 1 1684 164 20 17 chr6 55125339 55125631 -134153923 - AluJb SINE Alu -19 293 1 2319 107 0 16 chr6 55126529 55126839 -134152715 - AluSx SINE Alu -7 305 1 230 250 76 87 chr6 55127154 55127246 -134152308 - L2 LINE L2 -2 3270 3180 2019 120 6 46 chr6 55127262 55127587 -134151967 + AluSx SINE Alu 1 312 0 2198 100 0 23 chr6 55127968 55128269 -134151285 - AluSc SINE Alu -15 294 1 781 149 15 22 chr6 55128905 55129039 -134150515 - FLAM_C SINE Alu 0 133 1 2490 241 133 73 chr6 55129912 55130578 -134148976 - HAL1 LINE L1 -190 2317 1693 2986 155 31 2 chr6 55130578 55131121 -134148433 - L1MA8 LINE L1 -2 6289 5731 2490 241 133 73 chr6 55131121 55132229 -134147325 - HAL1 LINE L1 -814 1693 435 300 27 0 0 chr6 55132239 55132276 -134147278 + (GA)n Simple_repeat Simple_repeat 1 37 0 438 121 0 15 chr6 55132946 55133012 -134146542 - AluJb SINE Alu -17 295 231 913 170 0 13 chr6 55133012 55133165 -134146389 - AluJb SINE Alu -161 151 1 25 31 0 0 chr6 55133224 55133256 -134146298 + AT_rich Low_complexity Low_complexity 1 32 0 3382 167 75 45 chr6 55133314 55133415 -134146139 - L1MB7 LINE L1 0 6184 6088 2804 7 0 0 chr6 55133415 55133719 -134145835 - AluYa5 SINE Alu -7 304 1 3382 167 75 45 chr6 55133719 55134221 -134145333 - L1MB7 LINE L1 -96 6088 5603 1884 170 0 3 chr6 55134221 55134521 -134145033 - AluJb SINE Alu -12 300 2 3382 167 75 45 chr6 55134521 55134707 -134144847 - L1MB7 LINE L1 -581 5603 5424 1853 175 7 0 chr6 55134707 55135015 -134144539 - AluJb SINE Alu -2 310 1 441 0 0 0 chr6 55135020 55135069 -134144485 + (TG)n Simple_repeat Simple_repeat 2 50 0 3382 167 75 45 chr6 55135069 55135134 -134144420 - L1MB7 LINE L1 -763 5421 5296 648 218 16 8 chr6 55135149 55135273 -134144281 - FLAM_C SINE Alu -18 125 1 2102 206 25 4 chr6 55135277 55135825 -134143729 - L1MB7 LINE L1 -846 5300 4741 1191 243 110 30 chr6 55136012 55136485 -134143069 - MLT1J LTR MaLR 0 511 1 735 262 108 36 chr6 55136757 55137305 -134142249 - MLT2E LTR ERVL 0 628 1 1597 256 55 72 chr6 55137670 55138244 -134141310 - MLT1G LTR MaLR -33 557 1 7463 28 0 8 chr6 55138635 55139872 -134139682 - L1PA4 LINE L1 -3 6152 4918 1079 126 6 13 chr6 55140420 55140579 -134138975 - AluSg/x SINE Alu -23 289 132 1205 134 26 35 chr6 55140947 55140997 -134138557 + MER46A DNA MER2_type 1 50 -2681 2216 107 3 0 chr6 55140997 55141295 -134138259 - AluSp SINE Alu -14 299 1 1205 134 26 35 chr6 55141295 55141476 -134138078 + MER46A DNA MER2_type 50 230 -6 231 294 32 46 chr6 55141503 55141721 -134137833 + MER65A LTR ERV1 231 445 0 242 226 0 16 chr6 55141737 55141799 -134137755 - L1MC4 LINE L1 -58 7984 7924 1424 174 119 16 chr6 55142215 55142526 -134137028 - MER2 DNA MER2_type -1 343 1 193 302 19 19 chr6 55142527 55142580 -134136974 + L2 LINE L2 3134 3186 -86 1424 71 52 0 chr6 55144771 55144983 -134134571 - L1MA2 LINE L1 0 6304 6082 597 204 18 0 chr6 55145577 55145690 -134133864 + FLAM_A SINE Alu 5 119 -14 1066 161 137 0 chr6 55145818 55146023 -134133531 + MER46A DNA MER2_type 1 233 -3 295 295 16 100 chr6 55149125 55149367 -134130187 - MIR SINE MIR -29 233 4 321 325 67 49 chr6 55149533 55149655 -134129899 + MIR SINE MIR 2 120 -142 2068 151 0 0 chr6 55149655 55149959 -134129595 - AluSg SINE Alu -6 304 1 321 325 67 49 chr6 55149959 55150098 -134129456 + MIR SINE MIR 120 262 0 22 0 0 0 chr6 55150560 55150582 -134128972 + AT_rich Low_complexity Low_complexity 1 22 0 183 114 0 0 chr6 55150719 55150754 -134128800 + (T)n Simple_repeat Simple_repeat 1 35 0 2305 98 0 0 chr6 55151213 55151510 -134128044 - AluSc SINE Alu -12 297 1 420 292 18 9 chr6 55153791 55153904 -134125650 - L2 LINE L2 0 3313 3200 291 143 0 18 chr6 55156365 55156421 -134123133 + MIR SINE MIR 101 155 -107 2268 95 17 0 chr6 55156421 55156717 -134122837 - AluSq SINE Alu -12 301 1 404 251 86 43 chr6 55157215 55157402 -134122152 - L1MC5 LINE L1 -21 7940 7746 1849 153 10 7 chr6 55158594 55158888 -134120666 - AluJb SINE Alu -17 295 1 413 310 77 7 chr6 55159042 55159197 -134120357 + MER5B DNA MER1_type 13 178 0 207 69 0 0 chr6 55159298 55159327 -134120227 + (T)n Simple_repeat Simple_repeat 1 29 0 2919 148 47 8 chr6 55159488 55160021 -134119533 - L1MB8 LINE L1 0 6178 5625 479 241 94 31 chr6 55160357 55160548 -134119006 - MIR SINE MIR 0 262 60 2184 123 0 3 chr6 55160882 55161182 -134118372 - AluSx SINE Alu -13 299 1 5128 148 58 35 chr6 55161200 55161348 -134118206 - L1MA7 LINE L1 -6 6285 6142 2110 141 0 0 chr6 55161348 55161647 -134117907 - AluSx SINE Alu -13 299 1 5128 148 58 35 chr6 55161647 55162507 -134117047 - L1MA7 LINE L1 -149 6142 5254 341 125 0 0 chr6 55162518 55162566 -134116988 + Alu SINE Alu 1 48 -252 2281 115 0 0 chr6 55162569 55162874 -134116680 - AluSc SINE Alu -4 305 1 7866 219 69 49 chr6 55162877 55162998 -134116556 - L1M4c LINE L1 -3961 2773 2656 407 19 19 0 chr6 55162998 55163050 -134116504 + (TG)n Simple_repeat Simple_repeat 2 54 0 7866 219 69 49 chr6 55163050 55165918 -134113636 - L1M4c LINE L1 -4078 2656 21 184 326 16 111 chr6 55168068 55168258 -134111296 + L3 LINE CR1 816 987 -590 218 297 198 0 chr6 55168290 55168391 -134111163 - L2 LINE L2 0 3313 3193 374 270 137 30 chr6 55168417 55168650 -134110904 - L2 LINE L2 -14 3299 3042 278 30 0 0 chr6 55168650 55168683 -134110871 - tRNA-Gly-GGA tRNA tRNA -36 39 7 562 303 143 52 chr6 55168718 55169196 -134110358 - L2 LINE L2 -257 3056 2546 317 292 129 21 chr6 55169343 55169668 -134109886 - L1M4 LINE L1 -1979 4167 3808 880 152 0 14 chr6 55170012 55170150 -134109404 + FLAM_C SINE Alu 1 136 -7 2205 130 3 0 chr6 55170504 55170803 -134108751 - AluSx SINE Alu -12 300 1 26 30 0 0 chr6 55171036 55171069 -134108485 + AT_rich Low_complexity Low_complexity 1 33 0 362 312 129 22 chr6 55171074 55171391 -134108163 - L1M4 LINE L1 -2696 3450 3100 180 0 0 0 chr6 55171589 55171609 -134107945 + (T)n Simple_repeat Simple_repeat 1 20 0 253 224 105 28 chr6 55172039 55172182 -134107372 - L1M4 LINE L1 -3823 2323 2170 679 189 29 105 chr6 55172359 55172597 -134106957 - LTR41 LTR ERVL -10 763 544 228 250 191 0 chr6 55172827 55172963 -134106591 - LTR41 LTR ERVL -595 178 17 1031 230 71 20 chr6 55173355 55173607 -134105947 + Tigger7 DNA MER2_type 1 265 -2222 2612 150 73 73 chr6 55173615 55174174 -134105380 - MER7C DNA MER2_type 0 602 44 756 187 67 25 chr6 55174352 55174547 -134105007 + MER33 DNA MER1_type 1 188 -100 1218 145 13 48 chr6 55174548 55174776 -134104778 + Tigger2a DNA MER2_type 3 222 -212 471 214 0 0 chr6 55174780 55174869 -134104685 + AluJ/FLAM SINE Alu 6 94 -218 2873 216 57 23 chr6 55174884 55175624 -134103930 + L1MA9 LINE L1 5504 6268 -44 761 167 0 0 chr6 55175815 55175941 -134103613 - FLAM_C SINE Alu -7 126 1 683 140 0 0 chr6 55176053 55176160 -134103394 - AluSq/x SINE Alu -185 127 21 1409 135 0 0 chr6 55176625 55176825 -134102729 + AluSx SINE Alu 40 239 -73 833 0 10 0 chr6 55176847 55176944 -134102610 + (TAAAA)n Simple_repeat Simple_repeat 3 100 0 23 0 0 0 chr6 55177217 55177240 -134102314 + AT_rich Low_complexity Low_complexity 1 23 0 698 296 170 17 chr6 55178925 55179395 -134100159 + LTR67 LTR ERVL 5 546 -11 2091 128 3 3 chr6 55179958 55180254 -134099300 - AluSq SINE Alu -17 296 1 252 0 0 0 chr6 55180648 55180676 -134098878 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1472 165 88 4 chr6 55180678 55180938 -134098616 - AluJo SINE Alu -30 282 1 317 146 0 184 chr6 55181871 55181924 -134097630 - MER3 DNA MER1_type -4 205 177 2549 35 0 0 chr6 55181924 55182234 -134097320 + AluY SINE Alu 1 310 0 317 146 0 184 chr6 55182234 55182282 -134097272 - MER3 DNA MER1_type -32 177 122 782 181 0 0 chr6 55182427 55182554 -134097000 + AluJb SINE Alu 7 133 -179 1425 191 33 4 chr6 55182556 55182889 -134096665 + AluJo SINE Alu 1 341 0 306 161 149 35 chr6 55182977 55183064 -134096490 + L1MC/D LINE L1 5712 5808 -2000 180 125 0 0 chr6 55183370 55183402 -134096152 + (TC)n Simple_repeat Simple_repeat 2 33 0 322 287 0 11 chr6 55183581 55183668 -134095886 + MIR SINE MIR 30 115 -147 354 303 89 10 chr6 55184250 55184445 -134095109 + MIR SINE MIR 42 262 0 409 248 105 68 chr6 55184719 55184985 -134094569 + MLT1J LTR MaLR 143 418 -93 569 352 12 22 chr6 55185322 55185643 -134093911 + L3 LINE CR1 558 875 -702 2349 171 35 2 chr6 55185755 55186206 -134093348 - MLT1C LTR MaLR -1 466 1 220 291 194 0 chr6 55186218 55186321 -134093233 + L3 LINE CR1 1258 1380 -197 286 78 0 137 chr6 55186444 55186495 -134093059 + MER94 DNA DNA 6 49 -85 2257 180 70 49 chr6 55186541 55186737 -134092817 + MER97b DNA MER1_type? 83 274 -779 2418 92 0 0 chr6 55186737 55187041 -134092513 - AluSx SINE Alu -8 304 1 2257 180 70 49 chr6 55187041 55187227 -134092327 + MER97b DNA MER1_type? 274 455 -598 2292 105 7 0 chr6 55187227 55187531 -134092023 - AluSx SINE Alu -6 306 1 2257 180 70 49 chr6 55187531 55187736 -134091818 + MER97b DNA MER1_type? 455 683 -370 1950 170 0 0 chr6 55188385 55188696 -134090858 + AluSx SINE Alu 1 311 -1 248 277 226 20 chr6 55189774 55189969 -134089585 + MIR SINE MIR 28 262 0 2571 57 0 13 chr6 55190054 55190400 -134089154 + AluY SINE Alu 1 342 0 2006 104 0 15 chr6 55191084 55191353 -134088201 - AluSx SINE Alu -13 299 35 231 238 107 12 chr6 55192929 55193013 -134086541 - MIR SINE MIR -54 208 117 234 220 34 0 chr6 55194613 55194672 -134084882 + LTR33 LTR ERVL 45 105 -416 275 261 268 0 chr6 55195086 55195239 -134084315 + LTR33 LTR ERVL 233 426 -95 279 0 0 0 chr6 55195322 55195353 -134084201 + (TG)n Simple_repeat Simple_repeat 2 32 0 254 295 32 0 chr6 55195405 55195500 -134084054 - MIR SINE MIR -80 182 85 246 169 146 67 chr6 55195538 55195627 -134083927 - L1MC/D LINE L1 -1990 5818 5723 388 264 57 0 chr6 55197035 55197141 -134082413 + MER81 DNA DNA 1 112 -2 556 248 142 0 chr6 55198215 55198356 -134081198 - MER91A DNA MER1_type -35 161 1 736 205 29 54 chr6 55199828 55200033 -134079521 - L1ME2 LINE L1 0 6164 5965 1496 112 0 9 chr6 55200129 55200353 -134079201 - L1PA13 LINE L1 0 6163 5942 378 312 36 14 chr6 55200362 55200500 -134079054 - MIR3 SINE MIR -65 143 3 210 325 0 39 chr6 55202234 55202311 -134077243 - MER5A DNA MER1_type -55 134 61 410 247 178 23 chr6 55202344 55202563 -134076991 - L1ME4a LINE L1 -67 6054 5802 242 204 41 0 chr6 55202566 55202615 -134076939 - L1ME4a LINE L1 -438 5683 5633 286 163 43 98 chr6 55203180 55203272 -134076282 + MER53 DNA DNA 15 101 -88 * 374 105 53 53 chr6 55203197 55203273 -134076281 - MER53 DNA DNA -19 170 95 354 314 117 9 chr6 55204741 55204964 -134074590 - L1MC4a LINE L1 -1876 5932 5686 322 207 90 45 chr6 55205251 55205362 -134074192 - MER5A DNA MER1_type -73 116 1 1849 135 48 10 chr6 55205797 55205964 -134073590 - AluJo SINE Alu -12 300 116 267 31 0 0 chr6 55205964 55205996 -134073558 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1849 135 48 10 chr6 55205996 55206117 -134073437 - AluJo SINE Alu -196 116 1 237 269 22 66 chr6 55206195 55206377 -134073177 + (CAGAGA)n Simple_repeat Simple_repeat 2 175 0 801 266 115 22 chr6 55207585 55207897 -134071657 - MLT1I LTR MaLR -17 392 52 632 234 333 21 chr6 55208343 55208766 -134070788 + MLT1H1 LTR MaLR 1 555 0 964 161 17 0 chr6 55208936 55209110 -134070444 + L1MB2 LINE L1 5995 6171 0 355 315 63 0 chr6 55209712 55209839 -134069715 - MIR SINE MIR -21 241 107 1830 148 7 13 chr6 55209986 55210290 -134069264 + AluJo SINE Alu 11 312 0 577 223 32 38 chr6 55210314 55210471 -134069083 - L1ME3A LINE L1 -55 6115 5960 858 217 41 41 chr6 55211412 55211510 -134068044 + L2 LINE L2 2324 2421 -893 1043 230 88 100 chr6 55211510 55212111 -134067443 + MLT1G1 LTR MaLR 2 595 0 858 217 41 41 chr6 55212111 55212256 -134067298 + L2 LINE L2 2420 2567 -747 3282 167 25 75 chr6 55212307 55212672 -134066882 + MER21B LTR ERV1 118 437 -426 2148 151 74 20 chr6 55212672 55213076 -134066478 + MSTB LTR MaLR 1 426 0 3282 167 25 75 chr6 55213076 55213376 -134066178 + MER21B LTR ERV1 437 750 -113 357 315 197 19 chr6 55213447 55213505 -134066049 + L2 LINE L2 2555 2601 -712 2219 112 0 0 chr6 55213505 55213808 -134065746 - AluSp SINE Alu -10 303 1 357 315 197 19 chr6 55213808 55214251 -134065303 + L2 LINE L2 2601 3138 -175 258 61 0 0 chr6 55214315 55214348 -134065206 + U2 snRNA snRNA 1 33 -155 348 24 0 0 chr6 55214400 55214442 -134065112 - MADE1 DNA Mariner -34 46 5 513 198 27 9 chr6 55214453 55214564 -134064990 + L2 LINE L2 3177 3289 -24 361 264 72 16 chr6 55214587 55214712 -134064842 + MIR SINE MIR 103 234 -28 441 289 39 56 chr6 55214987 55215167 -134064387 - MIR3 SINE MIR -17 191 15 236 246 66 0 chr6 55215447 55215508 -134064046 + MLT1I LTR MaLR 345 409 0 198 0 0 0 chr6 55215579 55215601 -134063953 + (A)n Simple_repeat Simple_repeat 1 22 0 519 284 67 0 chr6 55215702 55215836 -134063718 + MIR3 SINE MIR 49 191 -17 252 299 52 0 chr6 55216198 55216275 -134063279 + MIR SINE MIR 80 160 -102 433 159 0 0 chr6 55216610 55216673 -134062881 + AluJ/FRAM SINE Alu 214 276 -36 2302 64 0 0 chr6 55216679 55216981 -134062573 + AluY SINE Alu 1 302 0 970 173 5 74 chr6 55217083 55217285 -134062269 - MER5A DNA MER1_type 0 189 2 797 222 15 20 chr6 55218776 55218979 -134060575 - MIR SINE MIR -32 230 29 900 285 102 12 chr6 55219417 55219750 -134059804 + MLT1J LTR MaLR 1 363 -148 288 246 0 43 chr6 55220060 55220152 -134059402 + MER5B DNA MER1_type 74 146 -32 551 290 140 36 chr6 55220242 55220521 -134059033 - L2 LINE L2 -1 3312 3005 919 258 80 23 chr6 55220658 55220960 -134058594 - MLT1J1 LTR MaLR -125 321 3 395 299 8 0 chr6 55220962 55221096 -134058458 - L2 LINE L2 -354 2959 2825 2347 203 39 71 chr6 55221503 55222040 -134057514 - MLT1F LTR MaLR -1 541 22 422 337 25 12 chr6 55222314 55222477 -134057077 - MIR3 SINE MIR -5 203 39 266 345 26 0 chr6 55223419 55223532 -134056022 + MIR3 SINE MIR 81 196 -12 585 277 44 24 chr6 55224512 55224718 -134054836 - MLT1L LTR MaLR -321 294 85 321 26 0 0 chr6 55224911 55224949 -134054605 + (TG)n Simple_repeat Simple_repeat 1 38 0 203 197 197 0 chr6 55225896 55225962 -134053592 + L2 LINE L2 3136 3214 -58 636 296 42 50 chr6 55226234 55226474 -134053080 - MIR SINE MIR -20 242 5 296 264 183 37 chr6 55226659 55226905 -134052649 - MLT1L LTR MaLR -328 287 6 311 264 36 36 chr6 55227319 55227429 -134052125 - MIR SINE MIR -17 245 136 502 215 215 49 chr6 55227435 55227598 -134051956 + MIR SINE MIR 73 262 0 212 177 76 0 chr6 55227591 55227643 -134051911 - MIR SINE MIR -105 157 101 * 524 186 0 8 chr6 55227701 55227825 -134051729 + GA-rich Low_complexity Low_complexity 2 124 0 273 169 0 0 chr6 55227833 55227892 -134051662 + (ATG)n Simple_repeat Simple_repeat 3 61 0 206 194 15 0 chr6 55227956 55228023 -134051531 + (ATG)n Simple_repeat Simple_repeat 2 69 0 304 290 64 36 chr6 55228044 55228230 -134051324 - MIR SINE MIR -1 261 10 610 264 43 7 chr6 55228277 55228417 -134051137 - MER5B DNA MER1_type -7 171 27 354 183 11 65 chr6 55228810 55228835 -134050719 - MIR3 SINE MIR -36 172 147 1352 164 65 38 chr6 55228835 55229128 -134050426 - AluJo SINE Alu -11 301 1 354 183 11 65 chr6 55229128 55229195 -134050359 - MIR3 SINE MIR -61 147 85 21 0 0 0 chr6 55229279 55229300 -134050254 + AT_rich Low_complexity Low_complexity 1 21 0 292 245 51 71 chr6 55229847 55229945 -134049609 - L2 LINE L2 -52 3261 3166 186 345 124 44 chr6 55229995 55230166 -134049388 - L2 LINE L2 -1551 1763 1607 2289 81 10 7 chr6 55230166 55230476 -134049078 + AluSp SINE Alu 1 311 -2 186 345 124 44 chr6 55230476 55231121 -134048433 - L2 LINE L2 -1707 1607 882 227 263 90 23 chr6 55231143 55231276 -134048278 + L1MEd LINE L1 4 145 -5974 245 239 88 44 chr6 55231626 55231874 -134047680 + L1MEd LINE L1 688 940 -5181 722 322 106 42 chr6 55231887 55232255 -134047299 - L2 LINE L2 -2465 849 437 1811 269 29 12 chr6 55232255 55232765 -134046789 - LTR40a LTR ERVL 0 519 1 722 322 106 42 chr6 55232765 55232915 -134046639 - L2 LINE L2 -2877 437 298 371 250 138 48 chr6 55233089 55233277 -134046277 + MIR3 SINE MIR 3 207 -1 226 309 37 12 chr6 55233599 55233680 -134045874 + MIR SINE MIR 22 104 -158 336 305 52 69 chr6 55233803 55234209 -134045345 + MLT1K LTR MaLR 187 585 -3 347 259 52 81 chr6 55234215 55234389 -134045165 + MIR SINE MIR 88 256 -6 567 199 58 45 chr6 55234430 55234586 -134044968 - MIR SINE MIR -2 260 103 1447 167 34 128 chr6 55234938 55235351 -134044203 + MLT1A2 LTR MaLR 1 374 0 773 141 0 7 chr6 55235574 55235716 -134043838 + (GGAA)n Simple_repeat Simple_repeat 4 144 0 1985 206 18 55 chr6 55236236 55236602 -134042952 - L1MA9 LINE L1 -30 6282 5939 2296 109 0 0 chr6 55236602 55236915 -134042639 + AluSq SINE Alu 1 313 0 1985 206 18 55 chr6 55236915 55237057 -134042497 - L1MA9 LINE L1 -373 5939 5793 399 31 46 0 chr6 55237057 55237122 -134042432 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 16361 193 28 33 chr6 55237140 55243939 -134035615 - L1MA4A LINE L1 -7 6998 193 334 276 10 0 chr6 55243947 55244045 -134035509 - L1MA4A LINE L1 -6739 110 12 3412 181 27 14 chr6 55244056 55245233 -134034321 - L1MA9 LINE L1 -527 5785 4589 22 0 0 0 chr6 55246377 55246399 -134033155 + AT_rich Low_complexity Low_complexity 1 22 0 194 354 33 61 chr6 55246401 55246582 -134032972 + L2 LINE L2 2738 2913 -401 326 312 158 30 chr6 55247785 55247987 -134031567 + MLT1L LTR MaLR 167 394 -221 460 203 57 24 chr6 55248017 55248140 -134031414 + MLT1L LTR MaLR 481 607 -8 292 250 198 9 chr6 55249004 55249120 -134030434 + LTR16C LTR ERVL 218 355 -136 418 189 33 11 chr6 55250854 55250944 -134028610 - MER39 LTR ERV1 0 707 616 1234 219 106 15 chr6 55251136 55251533 -134028021 - LTR16A LTR ERVL 0 450 18 435 265 10 0 chr6 55253013 55253115 -134026439 - MIR SINE MIR -137 125 23 204 239 0 22 chr6 55253855 55253901 -134025653 - L2 LINE L2 -24 3248 3204 902 279 67 20 chr6 55253946 55254348 -134025206 - LTR16A LTR ERVL -22 428 8 475 246 127 7 chr6 55254349 55254491 -134025063 - MIR SINE MIR -84 178 20 218 182 0 23 chr6 55254922 55254966 -134024588 - L2 LINE L2 -10 3262 3220 2048 181 52 45 chr6 55255539 55256003 -134023551 + MLT1C LTR MaLR 1 467 0 420 240 0 19 chr6 55256779 55256883 -134022671 + MER103 DNA DNA 8 109 -57 2225 80 10 10 chr6 55257003 55257304 -134022250 + AluSc SINE Alu 1 301 -8 2382 114 13 26 chr6 55257914 55258292 -134021262 + THE1C LTR MaLR 3 375 0 304 239 127 66 chr6 55258511 55258712 -134020842 + MER51A LTR ERV1 343 566 -68 219 69 0 0 chr6 55259914 55259943 -134019611 + (TCCCC)n Simple_repeat Simple_repeat 2 30 0 791 288 154 23 chr6 55260403 55260837 -134018717 + MLT1L LTR MaLR 125 615 0 202 313 31 62 chr6 55260853 55260949 -134018605 - L2 LINE L2 -25 3247 3155 746 209 63 6 chr6 55261021 55261179 -134018375 - MER58A DNA MER1_type 0 167 1 1039 159 208 80 chr6 55261822 55262173 -134017381 - MSTD LTR MaLR 0 396 1 1936 133 3 7 chr6 55263960 55264253 -134015301 + AluSx SINE Alu 1 292 -20 610 188 150 56 chr6 55264305 55264371 -134015183 + MER5A DNA MER1_type 9 67 -122 1625 174 7 4 chr6 55264371 55264681 -134014873 + AluJo SINE Alu 1 311 0 610 188 150 56 chr6 55264681 55264773 -134014781 + MER5A DNA MER1_type 67 183 -6 631 131 0 10 chr6 55265213 55265312 -134014242 + MER4A LTR ERV1 1 98 -566 1951 91 30 79 chr6 55265312 55265675 -134013879 + MER4A LTR ERV1 261 664 0 544 231 55 30 chr6 55265829 55266028 -134013526 + LTR67 LTR ERVL 352 555 -2 266 115 66 49 chr6 55267248 55267309 -134012245 + L1MC/D LINE L1 5703 5764 -2044 252 198 0 0 chr6 55267323 55267371 -134012183 - AluJ/FLAM SINE Alu -241 61 20 239 183 0 33 chr6 55267736 55267796 -134011758 - L1ME LINE L1 -216 5905 5848 195 69 0 0 chr6 55268105 55268134 -134011420 + (CCCCCA)n Simple_repeat Simple_repeat 5 33 0 1825 111 67 4 chr6 55268139 55268409 -134011145 + MER1B DNA MER1_type 52 338 -1 1058 194 0 84 chr6 55268513 55268797 -134010757 + AluJo SINE Alu 1 260 -52 285 350 20 0 chr6 55269092 55269192 -134010362 + L3b LINE CR1 1228 1329 -254 269 250 56 19 chr6 55269797 55269905 -134009649 - MIR3 SINE MIR -12 196 85 1399 239 99 50 chr6 55270125 55270589 -134008965 + LTR16C LTR ERVL 1 487 -4 646 289 102 30 chr6 55270820 55271055 -134008499 - MIR SINE MIR -10 252 1 357 323 60 45 chr6 55272061 55272194 -134007360 - L2 LINE L2 -17 3255 3121 468 316 53 16 chr6 55272292 55272479 -134007075 + MIR3 SINE MIR 13 206 -2 308 309 79 0 chr6 55272590 55272716 -134006838 - L3b LINE CR1 -145 1438 1303 475 147 112 26 chr6 55273261 55273377 -134006177 + MIR SINE MIR 70 195 -67 263 298 149 18 chr6 55273436 55273604 -134005950 + Charlie8 DNA MER1_type 92 281 -2136 606 250 76 6 chr6 55273948 55274127 -134005427 - MIR SINE MIR -33 229 38 656 145 94 0 chr6 55274290 55274407 -134005147 + MER20 DNA MER1_type 88 215 -4 844 170 0 53 chr6 55274419 55274590 -134004964 - FRAM SINE Alu -14 162 1 361 206 134 10 chr6 55274747 55274844 -134004710 - MIR3 SINE MIR -4 204 96 870 176 74 0 chr6 55275056 55275232 -134004322 - MER5A DNA MER1_type 0 189 1 442 281 94 12 chr6 55276580 55276751 -134002803 - MIR3 SINE MIR -7 201 17 351 268 0 0 chr6 55276861 55276943 -134002611 + L2 LINE L2 3186 3267 -5 2097 108 7 0 chr6 55277409 55277706 -134001848 - AluSx SINE Alu -13 299 1 188 325 34 51 chr6 55278121 55278238 -134001316 + MIR SINE MIR 49 163 -99 180 290 43 14 chr6 55278268 55278337 -134001217 + L3 LINE CR1 129 199 -1378 368 283 183 43 chr6 55281045 55281275 -133998279 - L1ME4a LINE L1 -172 5949 5688 38 51 0 0 chr6 55281289 55281348 -133998206 + AT_rich Low_complexity Low_complexity 1 59 0 216 0 0 0 chr6 55281355 55281379 -133998175 + (T)n Simple_repeat Simple_repeat 1 24 0 335 245 122 0 chr6 55281383 55281481 -133998073 - L1ME4a LINE L1 -35 6086 5977 180 312 78 0 chr6 55282558 55282635 -133996919 - L2 LINE L2 -42 3230 3148 585 250 90 0 chr6 55282657 55282813 -133996741 - MIR SINE MIR -6 256 87 426 213 32 0 chr6 55282904 55282998 -133996556 - MIR SINE MIR -63 145 49 323 269 39 0 chr6 55284036 55284114 -133995440 - MIR SINE MIR -77 185 105 202 306 111 0 chr6 55285312 55285384 -133994170 + MIR3 SINE MIR 109 188 -20 1499 191 34 7 chr6 55286273 55286566 -133992988 + AluJo SINE Alu 1 301 -11 205 300 0 53 chr6 55286571 55286709 -133992845 + MIR SINE MIR 94 220 -42 1845 116 18 4 chr6 55286726 55287045 -133992509 + AluSx SINE Alu 1 323 0 202 250 29 44 chr6 55287265 55287333 -133992221 + L2 LINE L2 2987 3053 -219 * 414 328 26 25 chr6 55287329 55287580 -133991974 - L2 LINE L2 -301 3012 2710 265 320 58 0 chr6 55287615 55287718 -133991836 - L2 LINE L2 -785 2529 2421 1436 263 88 26 chr6 55287941 55288443 -133991111 - MLT1E LTR MaLR -47 546 14 1211 105 0 0 chr6 55289017 55289189 -133990365 - AluSg/x SINE Alu -4 308 137 283 280 54 11 chr6 55289194 55289287 -133990267 - MIR SINE MIR -118 144 48 310 274 0 0 chr6 55289354 55289416 -133990138 - L2 LINE L2 -86 3186 3125 209 306 16 16 chr6 55289516 55289578 -133989976 - MER5A DNA MER1_type 0 189 128 850 262 46 30 chr6 55290097 55290402 -133989152 + L2 LINE L2 2997 3306 -7 602 156 148 0 chr6 55291786 55291908 -133987646 - MER103 DNA DNA -11 155 16 242 253 0 81 chr6 55292514 55292601 -133986953 - MIR SINE MIR -70 192 113 1023 208 51 51 chr6 55292815 55293128 -133986426 - L1MC5 LINE L1 -433 7528 7216 292 137 78 0 chr6 55293434 55293485 -133986069 - Alu SINE Alu -12 290 236 901 148 0 0 chr6 55293485 55293620 -133985934 + AluJo SINE Alu 17 151 -161 453 222 0 0 chr6 55293620 55293701 -133985853 - AluJb SINE Alu -91 221 141 307 186 0 0 chr6 55293701 55293755 -133985799 - Alu SINE Alu -258 44 2 1343 249 94 15 chr6 55293988 55294390 -133985164 + MLT1J2 LTR MaLR 17 450 0 324 0 0 0 chr6 55295185 55295221 -133984333 + (CA)n Simple_repeat Simple_repeat 2 37 0 4734 163 29 29 chr6 55295284 55296587 -133982967 + L1MB7 LINE L1 4867 6174 -10 962 227 72 0 chr6 55296607 55296814 -133982740 + MIR SINE MIR 31 252 -10 390 325 56 25 chr6 55297574 55297734 -133981820 + MIR3 SINE MIR 21 185 -23 375 221 13 0 chr6 55298530 55298607 -133980947 - L2 LINE L2 0 3313 3236 332 341 24 0 chr6 55298614 55298740 -133980814 - L2 LINE L2 -385 2929 2801 350 288 94 12 chr6 55298948 55299100 -133980454 + MIR SINE MIR 15 173 -61 636 242 37 0 chr6 55299211 55299372 -133980182 - LTR67 LTR ERVL -13 544 378 327 104 0 0 chr6 55299935 55299983 -133979571 + (TCCC)n Simple_repeat Simple_repeat 1 48 0 225 310 14 0 chr6 55300210 55300281 -133979273 + MIR SINE MIR 36 107 -101 267 315 122 11 chr6 55300282 55300463 -133979091 - MLT1K LTR MaLR 0 588 388 641 290 89 37 chr6 55302733 55303923 -133975631 - L1MEd LINE L1 -3783 2630 1266 251 344 48 40 chr6 55304030 55304155 -133975399 + L2 LINE L2 3137 3262 -10 25019 53 2 1 chr6 55304812 55310945 -133968609 - L1PA5 LINE L1 -8 6146 11 2183 145 0 0 chr6 55311527 55311838 -133967716 - AluSx SINE Alu -1 311 1 282 235 243 0 chr6 55311933 55312021 -133967533 - MIR SINE MIR -63 145 43 180 0 0 0 chr6 55312122 55312142 -133967412 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 227 227 0 0 chr6 55312363 55312407 -133967147 + L2 LINE L2 3221 3264 -8 1103 218 0 81 chr6 55313328 55313390 -133966164 - MIR SINE MIR 0 262 197 955 224 136 69 chr6 55313390 55313609 -133965945 - MLT1C LTR MaLR 0 467 264 210 37 0 0 chr6 55313609 55313636 -133965918 + (TC)n Simple_repeat Simple_repeat 2 28 0 1953 155 7 0 chr6 55313636 55313927 -133965627 - AluSx SINE Alu -19 293 1 955 224 136 69 chr6 55313927 55314140 -133965414 - MLT1C LTR MaLR -202 265 5 1103 218 0 81 chr6 55314140 55314361 -133965193 - MIR SINE MIR -65 197 2 1669 162 4 0 chr6 55314586 55314873 -133964681 + AluJo SINE Alu 28 315 0 468 270 108 34 chr6 55316212 55316524 -133963030 + MLT1I LTR MaLR 66 450 0 327 255 165 41 chr6 55316562 55316684 -133962870 - MIR SINE MIR -37 171 59 1444 265 92 69 chr6 55317180 55317224 -133962330 - L1MC4a LINE L1 -816 5330 5289 255 31 0 0 chr6 55317224 55317256 -133962298 + (TA)n Simple_repeat Simple_repeat 1 32 0 1444 265 92 69 chr6 55317256 55317842 -133961712 - L1MC4a LINE L1 -857 5289 5497 1594 174 61 17 chr6 55317842 55318136 -133961418 - AluJo SINE Alu -4 308 2 1444 265 92 69 chr6 55318136 55319173 -133960381 - L1MC4a LINE L1 -648 5498 4487 275 260 49 16 chr6 55319803 55319926 -133959628 - L1ME3A LINE L1 -2 6168 6042 689 121 0 0 chr6 55319927 55320018 -133959536 + AluJ/FLAM SINE Alu 2 92 -220 1468 196 29 14 chr6 55320018 55320294 -133959260 + AluJo SINE Alu 33 312 0 232 154 277 15 chr6 55320296 55320361 -133959193 - L1ME3 LINE L1 -113 6049 5968 183 288 61 0 chr6 55321990 55322056 -133957498 + L2 LINE L2 3019 3088 -225 982 165 16 22 chr6 55322066 55322248 -133957306 - AluJo SINE Alu -15 297 117 598 292 6 28 chr6 55322253 55322346 -133957208 + L2 LINE L2 3140 3229 -84 413 70 0 200 chr6 55322346 55322446 -133957108 + MADE1 DNA Mariner 1 80 0 598 292 6 28 chr6 55322446 55322530 -133957024 + L2 LINE L2 3229 3313 0 204 346 13 0 chr6 55323108 55323186 -133956368 + MIR SINE MIR 174 252 -10 519 277 8 0 chr6 55324969 55325099 -133954455 - MER94 DNA DNA -2 132 2 2037 128 0 24 chr6 55325122 55325419 -133954135 + AluSx SINE Alu 3 292 -20 278 293 61 0 chr6 55327191 55327290 -133952264 + MIR SINE MIR 32 136 -126 390 286 8 40 chr6 55327488 55327614 -133951940 - MIR SINE MIR -118 144 23 629 277 66 14 chr6 55329183 55329396 -133950158 + MIR SINE MIR 24 247 -15 228 194 90 30 chr6 55329418 55329485 -133950069 - L2 LINE L2 -31 3282 3212 229 274 24 48 chr6 55329600 55329684 -133949870 + MLT1J LTR MaLR 99 180 -331 1039 206 37 18 chr6 55329824 55330042 -133949512 + MER58A DNA MER1_type 1 222 -2 300 219 0 0 chr6 55330263 55330327 -133949227 - LTR67 LTR ERVL -10 547 484 1305 239 116 26 chr6 55330612 55331077 -133948477 + MLT1J LTR MaLR 5 511 0 1563 212 63 47 chr6 55331526 55332017 -133947537 - MLT1D LTR MaLR 0 505 7 2537 151 24 24 chr6 55332021 55332446 -133947108 + MSTB LTR MaLR 2 426 0 831 277 56 12 chr6 55332470 55332585 -133946969 - MIR SINE MIR -1 261 153 1592 211 116 75 chr6 55332585 55332751 -133946803 + MLT1E LTR MaLR 1 159 -434 2446 80 10 0 chr6 55332751 55333053 -133946501 + AluSq SINE Alu 1 305 -8 1592 211 116 75 chr6 55333053 55333456 -133946098 + MLT1E LTR MaLR 159 593 0 831 277 56 12 chr6 55333456 55333589 -133945965 - MIR SINE MIR -109 153 2 301 352 37 0 chr6 55334763 55334871 -133944683 + MIR SINE MIR 35 146 -62 2167 218 72 58 chr6 55334911 55335392 -133944162 - MLT1E LTR MaLR -2 591 99 2356 92 10 0 chr6 55335392 55335696 -133943858 + AluSp SINE Alu 1 307 -6 2167 218 72 58 chr6 55335696 55335797 -133943757 - MLT1E LTR MaLR -494 99 1 945 291 47 6 chr6 55336421 55336741 -133942813 + MLT1I LTR MaLR 59 391 -18 1324 220 17 10 chr6 55336959 55337250 -133942304 - AluJo SINE Alu -19 293 1 572 169 93 25 chr6 55337256 55337374 -133942180 - FLAM_A SINE Alu -3 130 5 926 113 57 0 chr6 55337614 55337755 -133941799 + MLT1A1 LTR MaLR 171 319 -46 230 358 25 0 chr6 55337767 55337848 -133941706 - MIR3 SINE MIR -28 180 98 211 143 0 0 chr6 55338826 55338861 -133940693 + L2 LINE L2 3217 3251 -21 2136 144 67 31 chr6 55339881 55340298 -133939256 - MLT1C LTR MaLR 0 467 36 180 0 0 0 chr6 55340479 55340499 -133939055 + (TCCA)n Simple_repeat Simple_repeat 2 21 0 180 111 0 0 chr6 55340504 55340531 -133939023 + (CA)n Simple_repeat Simple_repeat 1 27 0 392 238 98 42 chr6 55340634 55340777 -133938777 + MIR SINE MIR 20 170 -92 228 342 61 26 chr6 55341154 55341268 -133938286 - L2 LINE L2 0 3272 3155 483 250 0 92 chr6 55342371 55342535 -133937019 + MIR3 SINE MIR 57 205 -3 2118 136 0 3 chr6 55343125 55343426 -133936128 - AluSx SINE Alu -12 300 1 199 262 205 0 chr6 55343539 55343661 -133935893 + MIR SINE MIR 116 262 0 197 237 17 0 chr6 55343845 55343904 -133935650 + CT-rich Low_complexity Low_complexity 3 62 0 439 239 151 28 chr6 55343932 55344216 -133935338 - L1ME4a LINE L1 -4 6117 5799 789 262 47 5 chr6 55344620 55344834 -133934720 + MIR SINE MIR 40 262 0 22 0 0 0 chr6 55345346 55345368 -133934186 + AT_rich Low_complexity Low_complexity 1 22 0 581 207 0 6 chr6 55346719 55346898 -133932656 + (TG)n Simple_repeat Simple_repeat 1 178 0 230 213 0 12 chr6 55346957 55347037 -133932517 + (TG)n Simple_repeat Simple_repeat 1 79 0 237 259 59 24 chr6 55347525 55347610 -133931944 + MIR SINE MIR 105 192 -70 545 226 7 0 chr6 55348045 55348191 -133931363 + (TG)n Simple_repeat Simple_repeat 1 147 0 424 264 147 48 chr6 55349082 55349374 -133930180 - MLT1L LTR MaLR 0 615 295 273 175 88 0 chr6 55349796 55349853 -133929701 + MIR SINE MIR 106 167 -95 543 128 0 0 chr6 55350646 55350732 -133928822 + (TC)n Simple_repeat Simple_repeat 1 86 0 1840 205 12 11 chr6 55352587 55353142 -133926412 - MER82 DNA MER2_type 0 653 8 21 57 0 0 chr6 55353286 55353321 -133926233 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr6 55353361 55353393 -133926161 + AT_rich Low_complexity Low_complexity 1 32 0 464 250 22 15 chr6 55353456 55353592 -133925962 - MLT1B LTR MaLR -46 344 208 1707 239 3 0 chr6 55353609 55353948 -133925606 - MER58B DNA MER1_type -1 340 1 598 249 98 30 chr6 55353958 55354225 -133925329 - L1MC4a LINE L1 -303 5818 5585 2077 117 0 20 chr6 55354400 55354698 -133924856 + AluSx SINE Alu 5 296 -16 202 219 137 41 chr6 55355449 55355522 -133924032 - L2 LINE L2 -2 3311 3232 3970 144 16 13 chr6 55355720 55356394 -133923160 - L1MC1 LINE L1 -2 6331 5656 205 311 40 14 chr6 55356816 55356890 -133922664 - L2 LINE L2 -2 3311 3236 354 272 32 8 chr6 55357808 55357933 -133921621 + LTR67 LTR ERVL 4 131 -426 401 248 97 14 chr6 55358115 55358260 -133921294 + LTR67 LTR ERVL 401 557 0 1395 201 88 23 chr6 55358265 55358608 -133920946 - MLT1A1 LTR MaLR 0 365 1 3076 124 7 9 chr6 55358634 55359092 -133920462 + L1PA16 LINE L1 5710 6166 0 245 268 83 83 chr6 55359310 55359478 -133920076 - MIR3 SINE MIR -3 205 38 734 263 148 41 chr6 55359839 55360325 -133919229 - MLT1H1 LTR MaLR -2 553 16 2366 103 0 6 chr6 55360337 55360649 -133918905 - AluSx SINE Alu -2 310 1 305 301 0 14 chr6 55360679 55360752 -133918802 - MIR SINE MIR -84 124 53 296 321 9 71 chr6 55360997 55361109 -133918445 - MIR SINE MIR -88 120 16 217 309 0 60 chr6 55361258 55361342 -133918212 - MIR3 SINE MIR -12 196 118 228 338 0 0 chr6 55361574 55361642 -133917912 - L2 LINE L2 -2 3270 3203 2293 111 7 7 chr6 55362800 55363106 -133916448 + AluSx SINE Alu 1 306 -6 225 293 21 0 chr6 55363458 55363527 -133916027 - MIR SINE MIR -50 158 86 189 256 0 0 chr6 55364094 55364137 -133915417 + MIR SINE MIR 112 154 -108 699 267 104 30 chr6 55364440 55364691 -133914863 - L1MEd LINE L1 -4887 1232 1001 2081 127 7 3 chr6 55364691 55364990 -133914564 - AluSq SINE Alu -13 300 1 699 267 104 30 chr6 55364990 55365198 -133914356 - L1MEd LINE L1 -5118 1001 739 309 326 47 23 chr6 55365200 55365329 -133914225 + MIR SINE MIR 130 261 -1 207 284 40 14 chr6 55366218 55366292 -133913262 + MIR SINE MIR 89 164 -98 256 196 43 98 chr6 55366377 55366406 -133913148 + L2 LINE L2 3133 3162 -110 2661 23 0 32 chr6 55366406 55366714 -133912840 + AluYa5 SINE Alu 1 298 -13 256 196 43 98 chr6 55366714 55366776 -133912778 + L2 LINE L2 3162 3219 -53 1891 153 16 19 chr6 55367589 55367902 -133911652 - AluJb SINE Alu 0 312 1 1656 223 88 54 chr6 55368952 55369455 -133910099 + MLT2B1 LTR ERVL 1 520 0 747 147 21 0 chr6 55369727 55369870 -133909684 + L1MC3 LINE L1 6937 7082 -703 304 288 45 27 chr6 55369870 55369981 -133909573 + MLT1F1 LTR MaLR 25 137 -430 2592 171 46 34 chr6 55369994 55370562 -133908992 + L1MD3 LINE L1 7421 7995 0 649 253 42 32 chr6 55370764 55370954 -133908600 - MIR SINE MIR -24 238 47 2083 116 0 11 chr6 55370968 55371252 -133908302 + AluSq SINE Alu 25 305 -8 234 0 0 0 chr6 55371338 55371364 -133908190 + (CA)n Simple_repeat Simple_repeat 1 26 0 1089 168 25 0 chr6 55371487 55371683 -133907871 + MER20 DNA MER1_type 1 201 -18 637 268 6 22 chr6 55372078 55372257 -133907297 + MER5B DNA MER1_type 1 176 -2 484 238 146 12 chr6 55372385 55372549 -133907005 - MER5A DNA MER1_type 0 189 4 200 128 0 26 chr6 55372732 55372771 -133906783 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 201 74 0 0 chr6 55374623 55374650 -133904904 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 402 301 178 10 chr6 55374886 55375096 -133904458 + MIR SINE MIR 16 255 -7 805 100 0 9 chr6 55375341 55375451 -133904103 + AluJb SINE Alu 2 110 -202 919 149 91 0 chr6 55375451 55375605 -133903949 + AluSg/x SINE Alu 145 312 0 332 140 43 21 chr6 55375629 55375722 -133903832 + GA-rich Low_complexity Low_complexity 2 96 0 673 244 112 11 chr6 55375806 55376006 -133903548 - MIR SINE MIR -6 256 34 188 65 0 32 chr6 55376031 55376062 -133903492 + (CCTA)n Simple_repeat Simple_repeat 1 30 0 333 47 0 0 chr6 55377669 55377712 -133901842 + (CA)n Simple_repeat Simple_repeat 2 44 0 2069 160 3 6 chr6 55378543 55378856 -133900698 + AluJb SINE Alu 1 312 0 1461 133 74 27 chr6 55378901 55379157 -133900397 - L1MB5 LINE L1 0 6174 5907 670 233 296 8 chr6 55379176 55379528 -133900026 - L1ME3A LINE L1 0 6170 5718 368 233 12 12 chr6 55381102 55381116 -133898438 - MIR3 SINE MIR -33 175 162 333 275 62 42 chr6 55381116 55381309 -133898245 + MER117 DNA MER1_type 1 197 0 368 233 12 12 chr6 55381309 55381380 -133898174 - MIR3 SINE MIR -45 163 90 213 121 0 0 chr6 55381627 55381660 -133897894 + (T)n Simple_repeat Simple_repeat 1 33 0 266 264 11 22 chr6 55381936 55382027 -133897527 + L2 LINE L2 3144 3233 -39 1436 216 65 51 chr6 55382409 55382805 -133896749 - L1MC5 LINE L1 -49 7912 7504 1032 171 40 54 chr6 55382805 55383027 -133896527 + MER20 DNA MER1_type 1 219 0 1436 216 65 51 chr6 55383027 55383198 -133896356 - L1MC5 LINE L1 -457 7504 7337 200 277 92 0 chr6 55384077 55384142 -133895412 - L2 LINE L2 -47 3266 3196 227 300 43 0 chr6 55384218 55384288 -133895266 - L2 LINE L2 -222 3050 2978 366 271 156 15 chr6 55384397 55384596 -133894958 - L2 LINE L2 -538 2776 2550 313 93 0 0 chr6 55385278 55385321 -133894233 + (TC)n Simple_repeat Simple_repeat 1 43 0 324 211 16 49 chr6 55387693 55387816 -133891738 + GA-rich Low_complexity Low_complexity 4 122 0 209 237 62 44 chr6 55389102 55389194 -133890360 - MIR SINE MIR -57 151 56 959 261 91 28 chr6 55389768 55390163 -133889391 + MARNA DNA Mariner 9 428 -158 227 354 122 33 chr6 55390230 55390411 -133889143 - MIR SINE MIR -19 243 47 402 248 43 21 chr6 55391028 55391169 -133888385 + LTR67 LTR ERVL 405 548 -9 273 269 153 31 chr6 55391219 55391383 -133888171 - MIR SINE MIR -13 249 67 264 272 0 68 chr6 55392253 55392400 -133887154 + CT-rich Low_complexity Low_complexity 1 137 0 230 272 0 33 chr6 55392473 55392565 -133886989 + CT-rich Low_complexity Low_complexity 3 91 0 244 288 91 53 chr6 55392674 55392917 -133886637 - MLT1K LTR MaLR -17 571 320 393 281 59 30 chr6 55393294 55393429 -133886125 + MIR SINE MIR 12 150 -112 517 327 94 9 chr6 55393905 55394128 -133885426 + MIR SINE MIR 20 261 -1 377 229 0 0 chr6 55394266 55394336 -133885218 - L2 LINE L2 -4 3309 3240 441 198 91 41 chr6 55394338 55394459 -133885095 + MER91C DNA MER1_type 4 130 -10 761 294 78 8 chr6 55394558 55394813 -133884741 - L2 LINE L2 -492 2822 2550 283 372 33 0 chr6 55395839 55395960 -133883594 - L2 LINE L2 0 3313 3189 718 242 14 68 chr6 55396257 55396318 -133883236 - MIR SINE MIR -54 208 145 3009 124 30 18 chr6 55396318 55396818 -133882736 - L1MA4A LINE L1 -6 6297 5792 718 242 14 68 chr6 55396818 55396975 -133882579 - MIR SINE MIR -117 145 2 242 305 114 23 chr6 55397103 55397234 -133882320 + L3 LINE CR1 475 617 -960 1029 197 211 65 chr6 55397970 55398386 -133881168 - MLT1E2 LTR MaLR 0 626 150 219 242 0 0 chr6 55398551 55398613 -133880941 + (CA)n Simple_repeat Simple_repeat 1 62 0 232 255 0 0 chr6 55399181 55399228 -133880326 + (CA)n Simple_repeat Simple_repeat 1 47 0 524 296 109 15 chr6 55399571 55399838 -133879716 - MLT1L LTR MaLR 0 615 324 608 73 0 73 chr6 55399964 55400060 -133879494 - L1PA5 LINE L1 0 6154 6066 1281 20 0 0 chr6 55400060 55400212 -133879342 + L1PA5 LINE L1 5825 5976 -178 297 184 246 53 chr6 55400526 55400640 -133878914 - L2 LINE L2 -1 3271 3136 213 94 0 0 chr6 55401568 55401600 -133877954 + L2 LINE L2 3028 3059 -213 21 36 0 0 chr6 55401764 55401792 -133877762 + AT_rich Low_complexity Low_complexity 1 28 0 183 241 93 93 chr6 55402004 55402112 -133877442 + MIR SINE MIR 65 172 -90 216 237 158 0 chr6 55402288 55402364 -133877190 + L2 LINE L2 3221 3308 -5 279 0 0 0 chr6 55404590 55404621 -133874933 + (CA)n Simple_repeat Simple_repeat 2 32 0 296 322 35 9 chr6 55404732 55404847 -133874707 + LTR33A LTR ERVL 57 174 -349 266 230 0 69 chr6 55405326 55405413 -133874141 + MLT1J LTR MaLR 229 309 -202 1970 127 50 0 chr6 55405542 55405825 -133873729 + AluSx SINE Alu 2 298 -14 2185 141 0 3 chr6 55406448 55406754 -133872800 + AluSx SINE Alu 1 305 -7 9804 162 28 5 chr6 55407073 55409936 -133869618 - L1PB1 LINE L1 -2 6149 3227 1001 106 0 0 chr6 55409936 55410068 -133869486 - AluSp SINE Alu -181 132 1 260 188 138 50 chr6 55410552 55410632 -133868922 + MER31-int LTR ERV1 3402 3488 -1448 904 221 0 0 chr6 55410757 55410920 -133868634 + FRAM SINE Alu 4 166 0 348 94 0 0 chr6 55410923 55410976 -133868578 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 353 230 25 129 chr6 55410989 55411267 -133868287 + MER31-int LTR ERV1 3625 3873 -1063 2175 125 0 0 chr6 55411277 55411589 -133867965 + AluSx SINE Alu 1 312 0 244 120 40 0 chr6 55411595 55411645 -133867909 + GA-rich Low_complexity Low_complexity 2 53 0 452 277 76 33 chr6 55412076 55412260 -133867294 + LTR37B LTR ERV1 7 198 -270 662 195 85 6 chr6 55412332 55412496 -133867058 + LTR37B LTR ERV1 198 374 -94 2320 71 0 0 chr6 55412864 55413159 -133866395 + AluY SINE Alu 1 295 -16 228 223 11 106 chr6 55413598 55413692 -133865862 + L3 LINE CR1 640 724 -853 321 345 35 15 chr6 55414353 55414553 -133865001 + LTR33 LTR ERVL 15 218 -303 469 167 22 0 chr6 55414692 55414782 -133864772 + LTR33 LTR ERVL 427 518 -3 2026 105 3 14 chr6 55414851 55415168 -133864386 + AluSx SINE Alu 1 314 0 24 32 0 0 chr6 55415750 55415781 -133863773 + AT_rich Low_complexity Low_complexity 1 31 0 6218 16 1 1 chr6 55415781 55416483 -133863071 - L1PA2 LINE L1 -1 6154 5453 351 0 0 0 chr6 55417861 55417900 -133861654 + (CA)n Simple_repeat Simple_repeat 1 39 0 310 196 36 0 chr6 55418717 55418773 -133860781 - L2 LINE L2 0 3272 3215 517 286 94 6 chr6 55418776 55418947 -133860607 + MIR SINE MIR 28 213 -49 228 338 14 10 chr6 55419609 55419706 -133859848 + MIR SINE MIR 20 116 -110 225 94 0 0 chr6 55420635 55420667 -133858887 + (TC)n Simple_repeat Simple_repeat 1 32 0 259 324 14 0 chr6 55420742 55420816 -133858738 + L2 LINE L2 3238 3312 -1 217 174 22 0 chr6 55420891 55420937 -133858617 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 712 288 47 47 chr6 55420938 55421257 -133858297 + MLT1J LTR MaLR 114 432 -79 291 93 0 0 chr6 55421741 55421784 -133857770 + (TG)n Simple_repeat Simple_repeat 1 43 0 180 305 84 42 chr6 55422588 55422683 -133856871 + MIR SINE MIR 40 138 -70 436 267 121 47 chr6 55422820 55423053 -133856501 + MIR SINE MIR 3 262 0 500 282 77 31 chr6 55423383 55423578 -133855976 - MIR SINE MIR -34 228 25 546 128 0 0 chr6 55424112 55424206 -133855348 + (CA)n Simple_repeat Simple_repeat 1 94 0 211 250 21 104 chr6 55427557 55427653 -133851901 + MIR SINE MIR 106 193 -69 337 129 0 0 chr6 55428017 55428079 -133851475 + L1MA4 LINE L1 6237 6298 -2 2209 138 10 68 chr6 55428702 55429114 -133850440 - MLT1B LTR MaLR 0 390 3 2486 121 22 0 chr6 55429341 55429697 -133849857 - THE1B LTR MaLR 0 364 1 204 260 73 65 chr6 55429703 55429826 -133849728 - L2 LINE L2 -83 3230 3107 2419 74 0 0 chr6 55429829 55430127 -133849427 + AluSc SINE Alu 1 298 -11 1192 176 67 5 chr6 55430141 55430351 -133849203 + MER58A DNA MER1_type 2 224 0 223 354 61 27 chr6 55430409 55430556 -133848998 - L2 LINE L2 -222 3050 2899 237 345 121 48 chr6 55430651 55430816 -133848738 - L2 LINE L2 -56 3216 3040 2199 116 0 0 chr6 55430891 55431193 -133848361 + AluSx SINE Alu 1 302 -10 431 271 26 57 chr6 55431211 55431403 -133848151 - MIR SINE MIR -30 232 47 224 282 103 13 chr6 55434073 55434151 -133845403 - MIR3 SINE MIR -14 194 110 545 301 44 11 chr6 55434287 55434470 -133845084 + MIR SINE MIR 51 239 -23 2186 167 0 19 chr6 55434493 55434865 -133844689 - MLT1A1 LTR MaLR 0 365 1 859 304 81 69 chr6 55438081 55438690 -133840864 + L2 LINE L2 2332 2947 -367 1930 120 0 28 chr6 55438861 55439186 -133840368 - AluSg SINE Alu 0 317 1 379 313 93 4 chr6 55439648 55439907 -133839647 - L1ME4a LINE L1 -22 6099 5818 1157 275 104 13 chr6 55440234 55440627 -133838927 + MLT1J2 LTR MaLR 1 429 -21 364 288 82 24 chr6 55441463 55441633 -133837921 + MIR SINE MIR 54 233 -29 1073 141 191 5 chr6 55441636 55441835 -133837719 - MER46A DNA MER2_type 0 236 1 21 36 0 0 chr6 55441981 55442009 -133837545 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr6 55442442 55442462 -133837092 + (CA)n Simple_repeat Simple_repeat 1 20 0 418 186 269 19 chr6 55444107 55444263 -133835291 + MLT1H LTR MaLR 87 281 -268 655 132 70 18 chr6 55444320 55444434 -133835120 + MLT1H LTR MaLR 430 549 0 456 35 0 0 chr6 55445275 55445333 -133834221 + (TG)n Simple_repeat Simple_repeat 2 59 0 464 202 379 8 chr6 55446064 55446312 -133833242 + Charlie4a DNA MER1_type 1 340 -168 3679 144 48 22 chr6 55446312 55446537 -133833017 + L1MB3 LINE L1 5446 5664 -519 1854 62 49 4 chr6 55446537 55446781 -133832773 + AluY SINE Alu 35 289 -22 3679 144 48 22 chr6 55446781 55447243 -133832311 + L1MB3 LINE L1 5664 6151 -32 622 269 23 0 chr6 55447278 55447453 -133832101 + Charlie4a DNA MER1_type 330 508 0 600 238 8 8 chr6 55447826 55447952 -133831602 + MIR SINE MIR 47 172 -90 290 283 36 7 chr6 55448459 55448597 -133830957 + (CACG)n Simple_repeat Simple_repeat 4 145 0 445 119 15 0 chr6 55449414 55449481 -133830073 - MIR SINE MIR -110 152 85 1245 243 199 20 chr6 55449971 55450563 -133828991 + MER20B DNA MER1_type 86 783 0 266 253 13 63 chr6 55450598 55450677 -133828877 - L3 LINE CR1 -5 1572 1498 265 233 221 0 chr6 55451872 55451958 -133827596 - MIR3 SINE MIR -8 200 96 517 283 90 31 chr6 55452196 55452419 -133827135 - MIR SINE MIR 0 262 27 2604 120 91 0 chr6 55452735 55453143 -133826411 - LTR47A LTR ERVL -7 445 1 318 324 101 7 chr6 55453383 55453522 -133826032 + L1ME4a LINE L1 5621 5772 -349 376 271 119 53 chr6 55453582 55453826 -133825728 + L1ME4a LINE L1 5862 6121 0 599 311 153 4 chr6 55453854 55454082 -133825472 - MIR SINE MIR 0 262 1 570 232 201 71 chr6 55454579 55454958 -133824596 + MLT1H LTR MaLR 118 545 -4 288 246 0 16 chr6 55454997 55455058 -133824496 - L2 LINE L2 -10 3303 3244 287 317 77 0 chr6 55455567 55455671 -133823883 - MIR3 SINE MIR -14 194 83 215 300 58 50 chr6 55456289 55456409 -133823145 - MIR3 SINE MIR 0 208 88 3078 165 40 35 chr6 55457067 55457690 -133821864 + L1MB5 LINE L1 5538 6163 -11 2171 114 0 16 chr6 55457697 55458014 -133821540 - AluSx SINE Alu 0 312 1 420 282 195 40 chr6 55460988 55461326 -133818228 - L2 LINE L2 -2 3311 2919 466 237 79 53 chr6 55461395 55461585 -133817969 + MIR SINE MIR 35 229 -33 281 257 92 9 chr6 55461940 55462049 -133817505 + MIR SINE MIR 31 148 -114 2146 65 0 0 chr6 55462141 55462402 -133817152 + AluY SINE Alu 40 300 -11 2013 150 113 20 chr6 55464080 55464487 -133815067 - LTR56 LTR ERV1 0 445 1 10197 141 45 40 chr6 55464588 55465980 -133813574 - LTR56-int LTR ERV1 -219 5699 4315 6809 57 21 0 chr6 55465980 55466468 -133813086 - L1PA7 LINE L1 -6 6148 5672 2273 94 0 16 chr6 55466468 55466776 -133812778 - AluY SINE Alu -8 303 1 6809 57 21 0 chr6 55466776 55467328 -133812226 - L1PA7 LINE L1 -482 5672 5107 216 0 0 0 chr6 55467336 55467360 -133812194 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 10197 141 45 40 chr6 55467360 55468110 -133811444 - LTR56-int LTR ERV1 -1609 4309 3779 42661 60 3 0 chr6 55468126 55474249 -133805305 + L1PA4 LINE L1 12 6155 0 7231 54 3 2 chr6 55474217 55475110 -133804444 + L1PA5 LINE L1 5261 6154 0 * 43368 37 21 1 chr6 55475143 55481165 -133798389 - L1PA3 LINE L1 0 6155 13 7640 184 60 66 chr6 55481166 55483277 -133796277 - LTR56-int LTR ERV1 -1648 3633 1880 1549 115 104 24 chr6 55483260 55483468 -133796086 - LTR56-int LTR ERV1 -4649 1682 1443 * 24411 58 5 3 chr6 55483468 55487243 -133792311 - L1PA6 LINE L1 -3 6151 2362 1549 115 104 24 chr6 55487243 55487321 -133792233 - LTR56-int LTR ERV1 -4888 1443 1373 1019 185 92 40 chr6 55487446 55487695 -133791859 - LTR56-int LTR ERV1 -4949 1382 1121 2256 96 3 3 chr6 55488235 55488528 -133791026 - AluSc SINE Alu -16 293 1 2166 155 65 7 chr6 55489405 55489558 -133789996 - LTR56 LTR ERV1 0 445 302 4747 135 19 19 chr6 55489558 55490292 -133789262 - MER50 LTR ERV1 0 734 1 2166 155 65 7 chr6 55490292 55490551 -133789003 - LTR56 LTR ERV1 -143 302 9 1255 85 0 6 chr6 55490640 55490817 -133788737 - L1PA7 LINE L1 -1434 4712 4537 6842 64 15 0 chr6 55490817 55492208 -133787346 + L1PA7 LINE L1 4702 6109 -45 21 0 0 0 chr6 55492216 55492237 -133787317 + AT_rich Low_complexity Low_complexity 1 21 0 296 237 35 75 chr6 55493315 55493492 -133786062 + LTR8 LTR ERV1 1 149 -392 854 220 77 39 chr6 55493661 55493947 -133785607 + LTR8A LTR ERV1 288 584 -143 189 0 0 0 chr6 55493949 55493970 -133785584 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 7647 97 7 20 chr6 55493995 55494908 -133784646 - L1MA1 LINE L1 -14 6288 5390 1903 129 54 90 chr6 55494908 55495295 -133784259 + THE1C LTR MaLR 1 373 -2 7647 97 7 20 chr6 55495295 55495663 -133783891 - L1MA1 LINE L1 -912 5390 5019 437 240 6 117 chr6 55495663 55495834 -133783720 + LTR8A LTR ERV1 576 727 0 715 276 81 18 chr6 55495872 55496093 -133783461 + MLT1I LTR MaLR 14 248 -161 795 274 117 18 chr6 55496535 55496809 -133782745 + MLT1I LTR MaLR 108 408 -1 296 311 159 15 chr6 55496825 55496957 -133782597 - L2 LINE L2 0 3272 3122 1035 129 0 0 chr6 55497110 55497288 -133782266 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 254 376 93 19 chr6 55498024 55498186 -133781368 + MIR3 SINE MIR 30 203 -5 714 284 174 16 chr6 55498224 55498349 -133781205 - L1MC4a LINE L1 -1633 6175 6071 2058 228 94 13 chr6 55498349 55498827 -133780727 - LTR40a LTR ERVL -2 517 1 714 284 174 16 chr6 55498827 55499127 -133780427 - L1MC4a LINE L1 -1737 6071 5683 337 264 9 57 chr6 55499134 55499240 -133780314 - L1MC4a LINE L1 -2173 5635 5535 891 194 52 26 chr6 55499280 55499512 -133780042 - LTR50 LTR ERVL -557 238 1 736 180 63 26 chr6 55499519 55499708 -133779846 - L1MC4a LINE L1 -2317 5491 5296 429 291 105 0 chr6 55500466 55500638 -133778916 - MIR SINE MIR 0 262 73 239 279 16 23 chr6 55501286 55501415 -133778139 - L1ME4a LINE L1 -6 6115 5988 280 320 116 7 chr6 55501436 55501583 -133777971 - MIR SINE MIR -14 248 86 562 311 98 23 chr6 55501757 55502104 -133777450 - L1ME4a LINE L1 -341 5780 5408 398 279 0 0 chr6 55503262 55503373 -133776181 + MIR SINE MIR 61 171 -91 1119 236 53 20 chr6 55503384 55503685 -133775869 + L2 LINE L2 2405 2715 -599 1181 208 197 7 chr6 55503686 55503980 -133775574 + MLT1F LTR MaLR 179 528 -14 427 304 7 0 chr6 55503993 55504131 -133775423 + MLT1F-int LTR MaLR 3 141 -1230 555 314 37 0 chr6 55504140 55504382 -133775172 + MLT1F-int LTR MaLR 285 535 -836 491 276 33 22 chr6 55504639 55504820 -133774734 + MLT1F-int LTR MaLR 702 884 -487 742 227 44 110 chr6 55505004 55505387 -133774167 + MLT1F-int LTR MaLR 1014 1371 0 984 210 143 13 chr6 55505467 55505705 -133773849 + LTR16A1 LTR ERVL 189 457 0 242 268 72 43 chr6 55506146 55506284 -133773270 - L1ME3A LINE L1 -230 5940 5799 1769 264 128 76 chr6 55506296 55507093 -133772461 - L1MC4a LINE L1 -987 5159 4405 265 80 0 100 chr6 55507093 55507143 -133772411 + MADE1 DNA Mariner 1 45 -35 1769 264 128 76 chr6 55507143 55508396 -133771158 - L1MC4a LINE L1 -1741 4405 2951 191 259 69 0 chr6 55509752 55509810 -133769744 + L2 LINE L2 2454 2515 -799 411 209 213 66 chr6 55511027 55511386 -133768168 + L1ME2 LINE L1 5540 5871 -299 1532 137 58 8 chr6 55511625 55511866 -133767688 + AluJo SINE Alu 35 287 -25 593 214 46 0 chr6 55511939 55512070 -133767484 + MIR3 SINE MIR 41 177 -31 342 210 59 84 chr6 55512298 55512417 -133767137 + MIR3 SINE MIR 8 123 -85 1441 287 162 16 chr6 55512707 55513285 -133766269 - L2 LINE L2 0 3313 2821 2153 59 56 3 chr6 55513285 55513573 -133765981 - AluY SINE Alu -8 303 1 1441 287 162 16 chr6 55513573 55514033 -133765521 - L2 LINE L2 -492 2821 1806 315 216 81 34 chr6 55515857 55516005 -133763549 - L1MC5 LINE L1 -48 7913 7759 480 200 320 11 chr6 55516008 55516183 -133763371 - MLT1D LTR MaLR -1 504 276 852 196 31 0 chr6 55516235 55516398 -133763156 - MLT1D LTR MaLR -337 168 1 1349 207 70 142 chr6 55516398 55517636 -133761918 - L1MC5 LINE L1 -200 7761 6614 346 286 93 60 chr6 55517702 55517884 -133761670 - L1MC4a LINE L1 -1436 6372 6185 441 318 23 12 chr6 55517908 55518081 -133761473 + L2 LINE L2 3114 3288 -25 289 246 25 59 chr6 55518108 55518226 -133761328 - MIR SINE MIR -79 183 70 338 295 33 33 chr6 55518503 55518701 -133760853 + MIR SINE MIR 17 212 -50 468 283 22 14 chr6 55519088 55519226 -133760328 - MIR SINE MIR -89 173 35 2220 78 0 0 chr6 55519552 55519821 -133759733 + AluSx SINE Alu 44 312 0 188 408 61 0 chr6 55520001 55520099 -133759455 + MIR SINE MIR 36 139 -69 370 208 189 0 chr6 55520322 55520428 -133759126 + MIR SINE MIR 81 206 -56 180 238 0 48 chr6 55522563 55522605 -133756949 + MIR SINE MIR 30 69 -139 345 231 86 11 chr6 55522611 55522714 -133756840 + MIR SINE MIR 44 154 -54 1783 139 10 52 chr6 55522800 55523109 -133756445 - AluJo SINE Alu -16 296 1 1603 189 126 73 chr6 55523132 55523650 -133755904 + MLT1H LTR MaLR 3 547 -2 436 339 0 23 chr6 55525402 55525532 -133754022 - MER91A DNA MER1_type -53 143 17 342 198 49 0 chr6 55528170 55528251 -133751303 - L1MC4a LINE L1 -563 7245 7161 1679 163 80 18 chr6 55528262 55528648 -133750906 - L1MC4 LINE L1 -872 7170 6761 304 308 39 58 chr6 55530429 55530585 -133748969 - MIR3 SINE MIR -9 199 47 411 237 8 17 chr6 55530762 55530880 -133748674 + MLT1H1 LTR MaLR 439 555 0 751 233 6 0 chr6 55530890 55531066 -133748488 + ERVL LTR ERVL 5242 5418 -346 2084 134 89 7 chr6 55531276 55531289 -133748265 - L1MC3 LINE L1 -6 7779 7768 2318 84 0 10 chr6 55531289 55531585 -133747969 + AluSc SINE Alu 1 293 -16 2084 134 89 7 chr6 55531585 55531988 -133747566 - L1MC3 LINE L1 -17 7768 7329 438 198 28 9 chr6 55532012 55532118 -133747436 + Ricksha DNA DNA 238 345 -2901 1312 272 162 15 chr6 55532140 55532670 -133746884 + MLT2E LTR ERVL 19 626 -2 1686 208 156 31 chr6 55532745 55533284 -133746270 - MLT1E2 LTR MaLR 0 626 21 1813 150 10 24 chr6 55533860 55534153 -133745401 - AluJo SINE Alu -23 289 1 459 304 76 34 chr6 55534333 55534570 -133744984 + L1ME1 LINE L1 840 1086 -4984 334 262 52 14 chr6 55534575 55534785 -133744769 + L1ME1 LINE L1 1149 1366 -4895 2437 105 8 3 chr6 55534946 55535307 -133744247 + LTR57 LTR ERVL 7 369 -42 2173 140 0 0 chr6 55535332 55535640 -133743914 - AluSx SINE Alu -4 308 1 198 103 0 0 chr6 55535740 55535769 -133743785 + (TG)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr6 55535877 55535899 -133743655 + AT_rich Low_complexity Low_complexity 1 22 0 5847 220 128 58 chr6 55535995 55536477 -133743077 + L1ME1 LINE L1 2044 2491 -3609 496 111 0 25 chr6 55536477 55536558 -133742996 + MADE1 DNA Mariner 1 79 -1 5847 220 128 58 chr6 55536558 55537436 -133742118 + L1ME1 LINE L1 2491 3307 -2793 1711 160 7 31 chr6 55537436 55537724 -133741830 + AluJo SINE Alu 2 282 -30 5847 220 128 58 chr6 55537724 55540136 -133739418 + L1ME1 LINE L1 3307 6083 -17 1065 200 10 15 chr6 55540181 55540376 -133739178 + AluJo SINE Alu 9 202 -110 2365 29 38 54 chr6 55541245 55541561 -133737993 - AluY SINE Alu 0 311 1 596 299 18 6 chr6 55541981 55542148 -133737406 + MIR SINE MIR 5 173 -89 322 216 199 6 chr6 55542780 55542956 -133736598 - L1ME4a LINE L1 -4 6117 5908 572 286 115 17 chr6 55542984 55543333 -133736221 - L1ME4a LINE L1 -278 5843 5461 430 266 166 12 chr6 55543357 55543526 -133736028 - MIR SINE MIR -1 261 67 366 181 134 55 chr6 55543529 55543656 -133735898 - L1ME4a LINE L1 -732 5438 5302 24 32 0 0 chr6 55543677 55543708 -133735846 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 55543918 55543939 -133735615 + AT_rich Low_complexity Low_complexity 1 21 0 244 352 11 0 chr6 55544885 55544976 -133734578 - MIR SINE MIR -84 124 33 21 36 0 0 chr6 55545503 55545531 -133734023 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr6 55547454 55547490 -133732064 + AT_rich Low_complexity Low_complexity 1 36 0 1651 176 40 20 chr6 55549581 55549882 -133729672 - AluJo SINE Alu -3 309 3 307 274 27 68 chr6 55549937 55549996 -133729558 - L2 LINE L2 -575 2739 2679 2281 113 0 0 chr6 55549996 55550306 -133729248 + AluY SINE Alu 1 310 -1 307 274 27 68 chr6 55550306 55550392 -133729162 - L2 LINE L2 -635 2679 2600 185 178 22 0 chr6 55552786 55552831 -133726723 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 1567 183 63 11 chr6 55553004 55553171 -133726383 - AluJb SINE Alu -13 299 109 356 0 23 0 chr6 55553171 55553215 -133726339 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 1567 183 63 11 chr6 55553215 55553331 -133726223 - AluJb SINE Alu -203 109 1 3025 94 82 42 chr6 55554201 55554751 -133724803 - MER4B LTR ERV1 -36 574 3 227 420 51 0 chr6 55554768 55554906 -133724648 - L3b LINE CR1 -45 1538 1394 187 222 37 19 chr6 55555782 55555836 -133723718 + L2 LINE L2 3210 3264 -8 1979 207 60 55 chr6 55557628 55557703 -133721851 + Zaphod DNA AcHobo 178 251 -3780 2082 158 56 0 chr6 55557703 55558096 -133721458 + L1MB4 LINE L1 5757 6171 -9 1979 207 60 55 chr6 55558096 55558624 -133720930 + Zaphod DNA AcHobo 251 784 -3247 323 206 54 0 chr6 55558635 55558727 -133720827 + Zaphod DNA AcHobo 2423 2519 -1512 595 167 253 86 chr6 55558850 55559057 -133720497 + Zaphod DNA AcHobo 2757 2928 -1103 2245 123 0 3 chr6 55559057 55559366 -133720188 - AluSx SINE Alu -4 308 1 595 167 253 86 chr6 55559366 55559518 -133720036 + Zaphod DNA AcHobo 2928 3176 -855 350 296 3 8 chr6 55560071 55560224 -133719330 - L1ME LINE L1 -518 5603 5453 187 228 149 70 chr6 55560374 55560488 -133719066 + MIR SINE MIR 114 236 -26 226 245 137 0 chr6 55560750 55560852 -133718702 + L1M4 LINE L1 4726 4841 -1305 402 21 0 0 chr6 55560906 55560953 -133718601 + (CA)n Simple_repeat Simple_repeat 1 47 0 2475 90 0 0 chr6 55561627 55561937 -133717617 + AluY SINE Alu 1 310 -1 2117 132 0 3 chr6 55562594 55562889 -133716665 - AluSx SINE Alu -18 294 1 2240 94 3 3 chr6 55563503 55563802 -133715752 - AluSg SINE Alu -11 299 1 41072 44 3 3 chr6 55564108 55570248 -133709306 - L1PA4 LINE L1 -11 6144 6 28714 103 24 80 chr6 55570251 55576389 -133703165 - L1P3 LINE L1 -373 5781 1 363 210 10 23 chr6 55576368 55576478 -133703076 - L1ME LINE L1 -540 5581 5476 * 1047 94 123 0 chr6 55577789 55577959 -133701595 + MSTB LTR MaLR 234 424 -2 206 274 164 14 chr6 55578009 55578082 -133701472 + L2 LINE L2 3226 3309 -4 302 182 0 0 chr6 55578164 55578219 -133701335 + MSTB2 LTR MaLR 29 83 -374 503 294 201 20 chr6 55578565 55578858 -133700696 - L2 LINE L2 0 3313 2968 30 69 0 0 chr6 55579136 55579194 -133700360 + AT_rich Low_complexity Low_complexity 1 58 0 2915 231 98 15 chr6 55580014 55580660 -133698894 + L1ME1 LINE L1 3995 4768 -1378 486 49 0 0 chr6 55580660 55580721 -133698833 + (CA)n Simple_repeat Simple_repeat 2 62 0 2915 231 98 15 chr6 55580721 55581154 -133698400 + L1ME1 LINE L1 4768 5164 -982 1881 211 35 35 chr6 55581151 55581673 -133697881 + L1ME1 LINE L1 5645 6166 0 * 306 241 108 12 chr6 55581925 55582008 -133697546 - L2 LINE L2 -1 3271 3181 4385 105 91 8 chr6 55582212 55582937 -133696617 + LTR1 LTR ERV1 1 785 0 2144 124 7 0 chr6 55583386 55583685 -133695869 - AluSx SINE Alu -11 301 1 2456 87 0 0 chr6 55584245 55584543 -133695011 - AluSx SINE Alu -14 298 1 2278 116 3 13 chr6 55584714 55585025 -133694529 - AluSx SINE Alu -4 308 1 449 154 301 44 chr6 55585084 55585220 -133694334 + MER5B DNA MER1_type 7 177 -1 385 339 48 7 chr6 55585448 55585641 -133693913 - MIR SINE MIR -50 212 16 403 117 0 17 chr6 55585906 55585966 -133693588 + AluYa5 SINE Alu 115 173 -138 816 64 0 8 chr6 55585997 55586122 -133693432 - HERVKC4 LTR ERVK -2326 2936 2813 2647 7 0 3 chr6 55586140 55586433 -133693121 - AluYa5 SINE Alu -19 292 1 207 286 18 0 chr6 55587389 55587445 -133692109 - MIR3 SINE MIR -7 201 145 450 0 0 0 chr6 55587652 55587702 -133691852 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 809 222 195 14 chr6 55589992 55590213 -133689341 - MIR SINE MIR 0 262 2 765 177 0 0 chr6 55590294 55590418 -133689136 + AluJo SINE Alu 11 134 -178 382 215 105 52 chr6 55590438 55590610 -133688944 - LTR48 LTR ERV1 0 787 607 256 256 11 11 chr6 55590638 55590728 -133688826 - LTR48 LTR ERV1 -302 485 396 289 269 20 3 chr6 55590802 55590918 -133688636 - MER34B LTR ERV1 -428 114 26 352 279 48 0 chr6 55591200 55591304 -133688250 + L2 LINE L2 2592 2700 -614 242 252 10 87 chr6 55591740 55591843 -133687711 + L3 LINE CR1 1233 1327 -250 584 363 54 30 chr6 55594809 55595178 -133684376 + L2 LINE L2 2895 3272 0 560 210 112 56 chr6 55595210 55595353 -133684201 - MIR SINE MIR -2 260 110 321 215 0 0 chr6 55595483 55595548 -133684006 + MER116 DNA Mariner 2 66 -14 615 222 123 12 chr6 55597316 55597478 -133682076 - MIR3 SINE MIR -6 202 23 196 302 58 79 chr6 55598022 55598117 -133681437 + MIR SINE MIR 17 113 -95 1785 167 43 0 chr6 55598117 55598416 -133681138 - AluJo SINE Alu 0 312 1 2247 130 0 9 chr6 55598420 55598735 -133680819 - AluSx SINE Alu 0 312 1 196 302 58 79 chr6 55598735 55598773 -133680781 + MIR SINE MIR 116 152 -56 301 296 77 53 chr6 55599211 55599380 -133680174 + L2 LINE L2 2911 3083 -189 2211 103 3 28 chr6 55599439 55599760 -133679794 + AluSq SINE Alu 1 313 0 1094 305 18 58 chr6 55600226 55600728 -133678826 - L2 LINE L2 -28 3285 2804 600 162 0 9 chr6 55600733 55600838 -133678716 - THE1B LTR MaLR -10 354 251 3586 81 28 11 chr6 55600938 55601483 -133678071 - THE1B-int LTR MaLR -1026 554 1 1931 152 41 36 chr6 55601483 55601845 -133677709 - THE1B LTR MaLR 0 364 1 181 179 0 0 chr6 55601904 55601932 -133677622 - L2 LINE L2 -1527 1787 1760 189 0 0 0 chr6 55602184 55602205 -133677349 + (T)n Simple_repeat Simple_repeat 1 21 0 522 272 9 0 chr6 55602416 55602530 -133677024 + FLAM_A SINE Alu 2 116 -17 1705 134 45 0 chr6 55603232 55603479 -133676075 - AluSx SINE Alu -15 297 40 787 191 113 6 chr6 55604250 55604418 -133675136 + AluJo SINE Alu 117 302 -10 1969 148 14 0 chr6 55604563 55604854 -133674700 + AluJb SINE Alu 1 295 -17 824 290 18 25 chr6 55605192 55605478 -133674076 - L2 LINE L2 -2 3311 3028 1806 159 0 3 chr6 55605484 55605774 -133673780 - AluJo SINE Alu -23 289 1 2125 112 56 0 chr6 55607458 55607745 -133671809 + AluSx SINE Alu 1 303 -9 521 272 67 70 chr6 55608183 55608302 -133671252 + REP3 LTR ERV 190 308 -254 2520 71 0 3 chr6 55608302 55608612 -133670942 + AluSx SINE Alu 1 309 -3 521 272 67 70 chr6 55608612 55608819 -133670735 + REP3 LTR ERV 308 515 -47 730 176 8 0 chr6 55609000 55609125 -133670429 + FLAM_A SINE Alu 1 126 -7 762 140 0 0 chr6 55609246 55609353 -133670201 + FLAM_C SINE Alu 3 109 -34 490 324 87 0 chr6 55610069 55610288 -133669266 + MIR SINE MIR 4 241 -21 22 56 0 0 chr6 55611294 55611330 -133668224 + AT_rich Low_complexity Low_complexity 1 36 0 589 279 29 12 chr6 55612028 55612200 -133667354 + MIR3 SINE MIR 25 199 -9 289 308 56 28 chr6 55617959 55618066 -133661488 - L2 LINE L2 -9 3263 3154 345 280 63 10 chr6 55618678 55618803 -133660751 - MER5B DNA MER1_type -22 167 34 408 290 40 16 chr6 55619203 55619327 -133660227 - MIR3 SINE MIR 0 208 82 379 313 17 0 chr6 55621906 55622021 -133657533 + L2 LINE L2 3197 3313 0 252 114 0 0 chr6 55622824 55622859 -133656695 - U2 snRNA snRNA -153 35 1 1299 175 53 29 chr6 55623968 55624214 -133655340 - AluJb SINE Alu -21 291 40 32 26 0 0 chr6 55624249 55624288 -133655266 + AT_rich Low_complexity Low_complexity 1 39 0 2549 37 3 0 chr6 55624348 55624645 -133654909 - AluY SINE Alu -13 298 1 2148 140 0 6 chr6 55625858 55626172 -133653382 + AluJb SINE Alu 1 312 0 41002 33 21 1 chr6 55626178 55632208 -133647346 + L1PA2 LINE L1 1 6154 -1 493 161 193 0 chr6 55632217 55632378 -133647176 + L1M4 LINE L1 2860 3051 -3095 228 67 0 0 chr6 55632379 55632409 -133647145 + (A)n Simple_repeat Simple_repeat 1 30 0 316 198 59 0 chr6 55632626 55632727 -133646827 - L1ME4a LINE L1 -227 5894 5788 2012 122 0 7 chr6 55632727 55633005 -133646549 + AluSx SINE Alu 1 276 -36 15394 43 6 0 chr6 55633112 55635797 -133643757 + L1PA3 LINE L1 3453 6150 -5 671 273 37 27 chr6 55636001 55636188 -133643366 - MIR3 SINE MIR -8 200 12 7721 16 1 0 chr6 55636598 55638074 -133641480 - L1PA3 LINE L1 0 6155 4671 28 0 0 0 chr6 55638108 55638136 -133641418 + AT_rich Low_complexity Low_complexity 1 28 0 40 21 0 0 chr6 55638203 55638250 -133641304 + AT_rich Low_complexity Low_complexity 1 47 0 680 203 39 0 chr6 55638629 55638757 -133640797 - FLAM_A SINE Alu 0 133 1 287 265 10 20 chr6 55638760 55638858 -133640696 + MARNA DNA Mariner 364 460 -126 267 356 48 0 chr6 55639570 55639674 -133639880 + MIR SINE MIR 34 142 -66 637 269 29 0 chr6 55639681 55639852 -133639702 - MIR SINE MIR -1 261 86 184 222 0 22 chr6 55640301 55640346 -133639208 - MIR SINE MIR -39 223 180 322 311 19 19 chr6 55641036 55641139 -133638415 - L2 LINE L2 -21 3251 3149 1097 259 222 5 chr6 55641557 55641994 -133637560 + MLT1F LTR MaLR 2 533 -9 2142 114 7 3 chr6 55642776 55643084 -133636470 + AluSg SINE Alu 1 309 -1 14788 76 7 10 chr6 55643413 55645607 -133633947 + L1P LINE L1 7 2194 -3952 2030 104 19 57 chr6 55645956 55646085 -133633469 + AluSq SINE Alu 3 135 -178 2459 69 0 10 chr6 55646085 55646389 -133633165 + AluY SINE Alu 1 301 -10 2030 104 19 57 chr6 55646389 55646575 -133632979 + AluSq SINE Alu 135 306 -7 28 48 0 0 chr6 55649077 55649119 -133630435 + AT_rich Low_complexity Low_complexity 1 42 0 624 253 74 0 chr6 55649469 55649631 -133629923 + MIR SINE MIR 64 237 -25 1247 181 21 38 chr6 55649657 55649894 -133629660 - AluJo SINE Alu -38 274 42 647 258 131 41 chr6 55650142 55650456 -133629098 + L1MC4a LINE L1 5524 5865 -1943 1769 220 8 6 chr6 55650493 55650857 -133628697 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr6 55650954 55650977 -133628577 + AT_rich Low_complexity Low_complexity 1 23 0 12543 191 22 51 chr6 55652333 55652663 -133626891 - L1PB4 LINE L1 0 6156 5818 1822 179 3 0 chr6 55652663 55652954 -133626600 - AluSx SINE Alu -20 292 1 12543 191 22 51 chr6 55652954 55653197 -133626357 - L1PB4 LINE L1 -338 5818 5570 2246 102 0 7 chr6 55653197 55653492 -133626062 + AluSx SINE Alu 1 293 -19 12543 191 22 51 chr6 55653492 55653888 -133625666 - L1PB4 LINE L1 -586 5570 5164 1009 98 0 0 chr6 55653888 55654021 -133625533 - AluSg/x SINE Alu -5 307 175 12543 191 22 51 chr6 55654021 55657523 -133622031 - L1PB4 LINE L1 -992 5164 1747 506 282 74 40 chr6 55658260 55658583 -133620971 + L1ME LINE L1 67 400 -5670 564 206 39 0 chr6 55658601 55658703 -133620851 - FLAM_A SINE Alu -26 116 11 692 278 75 62 chr6 55658709 55659751 -133619803 + L1ME LINE L1 389 1458 -4803 560 210 112 56 chr6 55709830 55709973 -133569581 - MIR SINE MIR -2 260 110 321 215 0 0 chr6 55710103 55710168 -133569386 + MER116 DNA Mariner 2 66 -14 615 222 123 12 chr6 55711936 55712098 -133567456 - MIR3 SINE MIR -6 202 23 196 302 58 79 chr6 55712503 55712598 -133566956 + MIR SINE MIR 17 113 -95 1785 167 43 0 chr6 55712598 55712897 -133566657 - AluJo SINE Alu 0 312 1 2247 130 0 9 chr6 55712901 55713216 -133566338 - AluSx SINE Alu 0 312 1 196 302 58 79 chr6 55713216 55713254 -133566300 + MIR SINE MIR 116 152 -56 256 338 65 53 chr6 55713599 55713862 -133565692 + L2 LINE L2 2818 3083 -189 2211 103 3 28 chr6 55713921 55714242 -133565312 + AluSq SINE Alu 1 313 0 1094 305 18 58 chr6 55714708 55715210 -133564344 - L2 LINE L2 -28 3285 2804 1930 122 37 37 chr6 55715215 55715569 -133563985 - THE1B LTR MaLR -10 354 1 8471 87 166 7 chr6 55715569 55716932 -133562622 - THE1B-int LTR MaLR 0 1580 1 1931 152 41 36 chr6 55716932 55717294 -133562260 - THE1B LTR MaLR 0 364 1 181 179 0 0 chr6 55717353 55717381 -133562173 - L2 LINE L2 -1527 1787 1760 189 0 0 0 chr6 55717633 55717654 -133561900 + (T)n Simple_repeat Simple_repeat 1 21 0 522 272 9 0 chr6 55717865 55717979 -133561575 + FLAM_A SINE Alu 2 116 -17 1705 134 45 0 chr6 55718681 55718928 -133560626 - AluSx SINE Alu -15 297 40 2148 140 0 6 chr6 55721842 55722156 -133557398 + AluJb SINE Alu 1 312 0 41137 32 21 1 chr6 55722162 55728193 -133551361 + L1PA2 LINE L1 1 6154 -1 493 161 193 0 chr6 55728202 55728363 -133551191 + L1M4 LINE L1 2860 3051 -3095 228 67 0 0 chr6 55728364 55728394 -133551160 + (A)n Simple_repeat Simple_repeat 1 30 0 316 198 59 0 chr6 55728613 55728714 -133550840 - L1ME4a LINE L1 -227 5894 5788 2234 116 0 7 chr6 55728714 55729017 -133550537 + AluSx SINE Alu 1 301 -11 363 210 10 23 chr6 55730062 55730172 -133549382 + L1MC/D LINE L1 5476 5581 -540 * 29642 105 25 60 chr6 55730151 55736157 -133543397 + L1P3 LINE L1 1 5781 -373 41821 40 3 1 chr6 55736160 55742291 -133537263 + L1PA3 LINE L1 6 6144 -11 2274 90 3 3 chr6 55742597 55742896 -133536658 + AluSg SINE Alu 1 299 -11 2117 132 0 3 chr6 55743510 55743805 -133535749 + AluSx SINE Alu 1 294 -18 2410 97 0 3 chr6 55744256 55744567 -133534987 - AluY SINE Alu -1 310 1 402 21 0 0 chr6 55745241 55745288 -133534266 + (TG)n Simple_repeat Simple_repeat 1 47 0 226 245 137 0 chr6 55745342 55745444 -133534110 - L1M4 LINE L1 -1305 4841 4726 350 296 3 8 chr6 55745971 55746124 -133533430 + L1ME LINE L1 5453 5603 -518 1746 188 167 58 chr6 55746677 55746829 -133532725 - Zaphod DNA AcHobo -855 3176 3042 2245 123 0 3 chr6 55746829 55747138 -133532416 + AluSx SINE Alu 1 308 -4 1746 188 167 58 chr6 55747138 55747678 -133531876 - Zaphod DNA AcHobo -989 3042 2408 * 2069 203 58 55 chr6 55747674 55748204 -133531350 - Zaphod DNA AcHobo -3246 785 251 2082 158 56 0 chr6 55748204 55748597 -133530957 - L1MB4 LINE L1 -9 6171 5757 2069 203 58 55 chr6 55748597 55748672 -133530882 - Zaphod DNA AcHobo -3780 251 178 187 222 37 19 chr6 55750464 55750518 -133529036 - L2 LINE L2 -8 3264 3210 227 420 51 0 chr6 55751394 55751532 -133528022 + L3b LINE CR1 1394 1538 -45 2992 98 82 42 chr6 55751549 55752099 -133527455 + MER4B LTR ERV1 3 574 -36 1567 183 63 11 chr6 55752969 55753085 -133526469 + AluJb SINE Alu 1 109 -203 356 0 23 0 chr6 55753085 55753129 -133526425 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 1567 183 63 11 chr6 55753129 55753296 -133526258 + AluJb SINE Alu 109 299 -13 185 178 22 0 chr6 55753469 55753514 -133526040 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 309 265 27 75 chr6 55755907 55755994 -133523560 + L2 LINE L2 2600 2679 -635 2281 113 0 0 chr6 55755994 55756304 -133523250 - AluY SINE Alu -1 310 1 309 265 27 75 chr6 55756304 55756363 -133523191 + L2 LINE L2 2679 2739 -575 1651 176 40 20 chr6 55756418 55756719 -133522835 + AluJo SINE Alu 3 309 -3 22 56 0 0 chr6 55758810 55758846 -133520708 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr6 55760770 55760798 -133518756 + AT_rich Low_complexity Low_complexity 1 28 0 244 352 11 0 chr6 55761325 55761416 -133518138 + MIR SINE MIR 33 124 -84 21 0 0 0 chr6 55762362 55762383 -133517171 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 55762593 55762624 -133516930 + AT_rich Low_complexity Low_complexity 1 31 0 366 181 134 55 chr6 55762645 55762772 -133516782 + L1ME4a LINE L1 5302 5438 -732 430 266 166 12 chr6 55762775 55762944 -133516610 + MIR SINE MIR 67 261 -1 572 286 115 17 chr6 55762968 55763317 -133516237 + L1ME4a LINE L1 5461 5843 -278 322 216 199 6 chr6 55763345 55763521 -133516033 + L1ME4a LINE L1 5908 6117 -4 596 299 18 6 chr6 55764153 55764320 -133515234 - MIR SINE MIR -89 173 5 2365 29 38 54 chr6 55764740 55765056 -133514498 + AluY SINE Alu 1 311 0 1980 104 19 57 chr6 55766121 55766250 -133513304 + AluSq SINE Alu 3 135 -178 2413 69 0 10 chr6 55766250 55766554 -133513000 + AluY SINE Alu 1 301 -10 1980 104 19 57 chr6 55766554 55766740 -133512814 + AluSq SINE Alu 135 306 -7 28 48 0 0 chr6 55769242 55769284 -133510270 + AT_rich Low_complexity Low_complexity 1 42 0 623 253 74 0 chr6 55769634 55769796 -133509758 + MIR SINE MIR 64 237 -25 1216 181 21 38 chr6 55769822 55770059 -133509495 - AluJo SINE Alu -38 274 42 755 258 131 41 chr6 55770307 55770621 -133508933 + L1MC4a LINE L1 5524 5865 -1943 1764 220 8 6 chr6 55770658 55771022 -133508532 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr6 55771119 55771142 -133508412 + AT_rich Low_complexity Low_complexity 1 23 0 2181 111 0 3 chr6 55771718 55772016 -133507538 - AluSx SINE Alu -15 297 1 21 71 0 0 chr6 55772056 55772098 -133507456 + AT_rich Low_complexity Low_complexity 1 42 0 220 233 43 129 chr6 55772664 55772780 -133506774 - MIR SINE MIR -40 222 117 516 102 0 82 chr6 55772797 55772895 -133506659 - L1MD3 LINE L1 0 7995 7906 385 197 66 0 chr6 55772897 55772973 -133506581 + 5S rRNA rRNA 9 89 -32 288 307 148 37 chr6 55773568 55773757 -133505797 - MIR SINE MIR 0 262 53 435 266 54 69 chr6 55775002 55775205 -133504349 - MLT1J LTR MaLR -2 509 310 705 180 27 47 chr6 55775296 55775446 -133504108 - MER6 DNA MER2_type 0 865 -2 433 218 56 101 chr6 55775491 55775670 -133503884 - MLT1J LTR MaLR -336 175 5 385 289 3 41 chr6 55776611 55776755 -133502799 + MIR SINE MIR 7 142 -66 931 222 154 23 chr6 55776825 55777124 -133502430 + AluJo SINE Alu 1 302 0 216 0 0 0 chr6 55777209 55777233 -133502321 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2067 92 28 0 chr6 55777259 55777541 -133502013 - AluY SINE Alu -21 290 1 1390 208 52 10 chr6 55780083 55780203 -133499351 + AluJo SINE Alu 1 115 -197 428 14 28 28 chr6 55780203 55780274 -133499280 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 1390 208 52 10 chr6 55780274 55780442 -133499112 + AluJo SINE Alu 115 301 -11 626 228 42 47 chr6 55781271 55781464 -133498090 + MIR SINE MIR 59 250 -12 409 262 64 7 chr6 55781529 55781670 -133497884 + Charlie7 DNA MER1_type 1437 1585 -1027 601 275 75 10 chr6 55781732 55781932 -133497622 - L2 LINE L2 0 3313 3101 1573 178 45 68 chr6 55781973 55782355 -133497199 - MLT1A2 LTR MaLR 0 374 2 317 301 0 0 chr6 55782363 55782436 -133497118 - L2 LINE L2 -250 3063 2991 873 250 368 49 chr6 55782498 55783151 -133496403 - L2 LINE L2 -1351 1963 1103 26 30 0 0 chr6 55783453 55783486 -133496068 + AT_rich Low_complexity Low_complexity 1 33 0 256 254 22 43 chr6 55783492 55783630 -133495924 + L1 LINE L1 2890 3024 -3122 591 237 38 32 chr6 55783684 55783870 -133495684 - L1ME LINE L1 -448 5673 5487 3695 155 30 24 chr6 55784361 55785509 -133494045 - L1MA9 LINE L1 -375 5937 4780 551 93 0 0 chr6 55785510 55785585 -133493969 + MSTB LTR MaLR 28 102 -324 428 158 61 0 chr6 55785590 55785672 -133493882 - L1MA9 LINE L1 -1376 4770 4684 741 162 0 0 chr6 55785672 55785789 -133493765 + MSTB LTR MaLR 1 117 -309 43 35 0 0 chr6 55786010 55786067 -133493487 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr6 55786289 55786313 -133493241 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr6 55786789 55786816 -133492738 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 542 153 0 0 chr6 55786818 55786903 -133492651 - AluSg/x SINE Alu -31 279 195 1681 183 4 0 chr6 55788162 55788477 -133491077 + AluJb SINE Alu 2 317 0 261 296 46 46 chr6 55789451 55789559 -133489995 + L2 LINE L2 3205 3312 -1 422 310 140 83 chr6 55789792 55790214 -133489340 + MLT1K LTR MaLR 109 554 -34 21 0 0 0 chr6 55791567 55791588 -133487966 + AT_rich Low_complexity Low_complexity 1 21 0 362 176 93 19 chr6 55791829 55791937 -133487617 - MER103 DNA DNA -40 126 11 284 44 29 0 chr6 55792344 55792392 -133487162 - MADE1 DNA Mariner 0 80 41 355 323 86 42 chr6 55792401 55792738 -133486816 - L1M4 LINE L1 -1444 4702 4351 572 325 94 19 chr6 55792825 55793354 -133486200 - L1M4 LINE L1 -1869 4277 3709 314 64 64 0 chr6 55793737 55793784 -133485770 + MADE1 DNA Mariner 4 53 -27 332 70 0 0 chr6 55793882 55793925 -133485629 + MADE1 DNA Mariner 38 80 0 208 261 0 14 chr6 55794017 55794086 -133485468 + T-rich Low_complexity Low_complexity 3 70 0 187 322 126 23 chr6 55794628 55794715 -133484839 - MIR3 SINE MIR -28 180 85 1976 178 13 16 chr6 55794950 55794964 -133484590 + L1M2 LINE L1 4901 4914 -1232 3505 145 49 22 chr6 55794964 55795634 -133483920 - L1MA8 LINE L1 -6 6285 5598 1976 178 13 16 chr6 55795634 55796002 -133483552 + L1M2 LINE L1 4914 5282 -864 430 216 52 17 chr6 55795998 55796114 -133483440 - L1MD3 LINE L1 -134 7861 7742 * 1714 140 3 3 chr6 55796201 55796494 -133483060 + L1M2 LINE L1 5317 5609 -682 482 243 172 12 chr6 55796494 55796663 -133482891 + L2 LINE L2 1653 1848 -1466 306 288 20 50 chr6 55796664 55796829 -133482725 - L1MC4 LINE L1 -1463 6532 6374 * 2420 232 81 37 chr6 55796827 55797502 -133482052 + L1M4 LINE L1 4047 4773 -1373 2083 143 0 0 chr6 55797502 55797810 -133481744 + AluSx SINE Alu 1 308 -4 2420 232 81 37 chr6 55797810 55798036 -133481518 + L1M4 LINE L1 4773 4988 -1158 1064 259 25 9 chr6 55798238 55798562 -133480992 + L1M4 LINE L1 5064 5392 -754 * 1618 106 13 0 chr6 55798559 55798796 -133480758 + L1P LINE L1 4119 4358 -1788 185 121 0 61 chr6 55798970 55799003 -133480551 + MER5A DNA MER1_type 1 31 -158 22 0 0 0 chr6 55799335 55799357 -133480197 + AT_rich Low_complexity Low_complexity 1 22 0 189 372 12 23 chr6 55799504 55799590 -133479964 + MIR SINE MIR 30 114 -94 293 324 72 43 chr6 55799838 55799977 -133479577 - L2 LINE L2 -210 3062 2920 181 197 49 66 chr6 55800547 55800608 -133478946 + L2 LINE L2 3173 3232 -81 702 177 6 43 chr6 55800761 55800925 -133478629 + L1PA16 LINE L1 6007 6164 -2 408 71 0 0 chr6 55801053 55801109 -133478445 + (TG)n Simple_repeat Simple_repeat 2 57 0 22 0 0 0 chr6 55801276 55801298 -133478256 + AT_rich Low_complexity Low_complexity 1 22 0 2365 24 17 3 chr6 55801355 55801644 -133477910 - L1P2 LINE L1 -374 5781 5489 346 0 41 20 chr6 55801644 55801684 -133477870 + L1PA4 LINE L1 6104 6153 -2 2078 127 0 0 chr6 55801809 55802101 -133477453 - AluSq SINE Alu -21 292 1 193 322 102 8 chr6 55802308 55802426 -133477128 - MIR SINE MIR -29 233 105 269 311 9 110 chr6 55802765 55802993 -133476561 + L2 LINE L2 2880 3084 -188 500 302 101 0 chr6 55803459 55803638 -133475916 + L2 LINE L2 3117 3313 0 1022 233 18 14 chr6 55804393 55804616 -133474938 + MER58A DNA MER1_type 1 224 0 1900 112 10 20 chr6 55804866 55805160 -133474394 - AluSq SINE Alu -2 311 21 318 232 81 0 chr6 55806755 55806854 -133472700 - L1ME4a LINE L1 -13 6108 6002 339 22 0 0 chr6 55806862 55806908 -133472646 - AluSp/q SINE Alu -7 296 251 30 0 0 0 chr6 55806981 55807011 -133472543 + AT_rich Low_complexity Low_complexity 1 30 0 2003 109 0 56 chr6 55807011 55807313 -133472241 - AluSg SINE Alu -25 285 1 218 81 27 0 chr6 55807354 55807391 -133472163 + (TTTTC)n Simple_repeat Simple_repeat 5 42 0 1700 240 98 60 chr6 55807398 55808218 -133471336 - HAL1 LINE L1 -266 2241 1391 568 297 266 11 chr6 55808250 55808604 -133470950 + L2 LINE L2 2818 3261 -52 519 217 115 35 chr6 55808633 55808859 -133470695 - HAL1 LINE L1 -1109 1398 1155 256 326 109 23 chr6 55809267 55809442 -133470112 - MIR SINE MIR -6 256 67 190 273 0 111 chr6 55809823 55809922 -133469632 + MIR SINE MIR 99 186 -76 475 233 95 86 chr6 55810260 55810672 -133468882 + LTR33 LTR ERVL 37 521 0 233 250 117 0 chr6 55811257 55811317 -133468237 + L2 LINE L2 3246 3312 -1 201 319 77 33 chr6 55813005 55813096 -133466458 - MIR3 SINE MIR -6 202 108 1827 153 7 14 chr6 55814614 55814909 -133464645 + AluJo SINE Alu 1 293 -19 283 191 27 18 chr6 55815264 55815374 -133464180 + (TA)n Simple_repeat Simple_repeat 1 111 0 264 100 0 0 chr6 55815742 55815782 -133463772 + (T)n Simple_repeat Simple_repeat 1 40 0 219 259 136 0 chr6 55815983 55816064 -133463490 + MIR SINE MIR 163 254 -8 265 106 0 43 chr6 55817067 55817114 -133462440 - L2 LINE L2 -7 3306 3262 247 246 15 0 chr6 55817587 55817652 -133461902 + MER116 DNA Mariner 15 80 0 234 317 0 0 chr6 55817856 55817916 -133461638 - Charlie4 DNA MER1_type -10 1951 1892 470 31 0 0 chr6 55819330 55819448 -133460106 + L1PA2 LINE L1 6092 6209 0 923 156 14 0 chr6 55819636 55819777 -133459777 - FAM SINE Alu -42 143 1 234 393 0 9 chr6 55819836 55819943 -133459611 + L3 LINE CR1 866 971 -606 424 308 45 63 chr6 55819947 55820168 -133459386 + L3 LINE CR1 1078 1294 -283 1939 205 50 39 chr6 55820171 55820741 -133458813 - L1ME LINE L1 -350 5771 5209 183 80 0 0 chr6 55820784 55820809 -133458745 + (T)n Simple_repeat Simple_repeat 1 25 0 42465 40 22 1 chr6 55820845 55826869 -133452685 - L1PA5 LINE L1 -5 6149 1 189 0 0 0 chr6 55827402 55827423 -133452131 + (A)n Simple_repeat Simple_repeat 1 21 0 2354 109 23 0 chr6 55827698 55828048 -133451506 - L1PA11 LINE L1 -2 6172 5815 266 216 20 0 chr6 55828245 55828296 -133451258 - MER39 LTR ERV1 -655 52 1 1336 154 8 69 chr6 55828412 55828672 -133450882 + AluJo SINE Alu 50 293 -19 293 217 43 11 chr6 55828699 55828791 -133450763 + CT-rich Low_complexity Low_complexity 1 95 0 198 396 55 0 chr6 55828891 55828982 -133450572 + L2 LINE L2 3180 3275 -38 1307 252 182 116 chr6 55829612 55830385 -133449169 + L2 LINE L2 597 1420 -1894 33 0 0 0 chr6 55832636 55832669 -133446885 + AT_rich Low_complexity Low_complexity 1 33 0 33 66 0 0 chr6 55833390 55833451 -133446103 + AT_rich Low_complexity Low_complexity 1 61 0 617 326 140 17 chr6 55833704 55834232 -133445322 - L1MC4a LINE L1 -1952 5839 5247 1815 66 154 0 chr6 55834325 55834584 -133444970 + AluSp SINE Alu 2 300 -3 358 309 39 44 chr6 55834923 55835104 -133444450 - L1MC4a LINE L1 -3732 2397 2218 246 350 0 0 chr6 55835921 55836001 -133443553 - HAL1b LINE L1 -827 521 442 233 273 12 64 chr6 55836168 55836340 -133443214 - L1MC4a LINE L1 -4915 1204 1042 6062 211 42 54 chr6 55836694 55837225 -133442329 - L1MB8 LINE L1 -168 6508 5972 1670 189 3 7 chr6 55837225 55837521 -133442033 - AluJo SINE Alu -17 295 1 6062 211 42 54 chr6 55837521 55837613 -133441941 - L1MB8 LINE L1 -704 5972 5880 1795 145 3 18 chr6 55837613 55837895 -133441659 - AluSx SINE Alu -18 294 17 6062 211 42 54 chr6 55837895 55839350 -133440204 - L1MB8 LINE L1 -796 5880 4470 1413 211 32 67 chr6 55839350 55839724 -133439830 - MLT1A1 LTR MaLR 0 365 5 6062 211 42 54 chr6 55839724 55840263 -133439291 - L1MB8 LINE L1 -2206 4470 3926 228 233 0 0 chr6 55840509 55840552 -133439002 - MIR SINE MIR -108 154 112 192 111 0 0 chr6 55841347 55841383 -133438171 + (T)n Simple_repeat Simple_repeat 1 36 0 631 203 34 40 chr6 55841831 55842008 -133437546 - L1MB8 LINE L1 -5327 1215 1040 * 6054 141 6 23 chr6 55842006 55843671 -133435883 - L1PB1 LINE L1 0 6151 4514 404 248 148 0 chr6 55843666 55843815 -133435739 - L1MB8 LINE L1 -5493 1049 879 * 35 24 0 0 chr6 55843818 55843860 -133435694 + AT_rich Low_complexity Low_complexity 1 42 0 890 229 47 83 chr6 55843915 55844216 -133435338 - L1MB8 LINE L1 -5671 871 582 1639 249 69 4 chr6 55844227 55844688 -133434866 - MER39 LTR ERV1 -2 705 215 507 206 10 0 chr6 55844683 55844785 -133434769 - MER39 LTR ERV1 -25 682 580 * 376 256 49 13 chr6 55844786 55844929 -133434625 - MER39 LTR ERV1 -252 455 174 894 79 0 0 chr6 55844932 55845046 -133434508 - AluY SINE Alu -11 300 187 7381 116 33 27 chr6 55845171 55846225 -133433329 + THE1C-int LTR MaLR 431 1494 -86 2406 68 0 7 chr6 55846225 55846521 -133433033 + AluY SINE Alu 1 294 -17 7381 116 33 27 chr6 55846521 55846609 -133432945 + THE1C-int LTR MaLR 1494 1580 0 2638 98 3 13 chr6 55846610 55846987 -133432567 + THE1C LTR MaLR 1 373 -2 387 208 17 83 chr6 55846988 55847108 -133432446 - L2 LINE L2 -698 2616 2505 22 35 0 0 chr6 55848036 55848065 -133431489 + AT_rich Low_complexity Low_complexity 1 29 0 294 301 21 43 chr6 55848912 55849098 -133430456 - L1ME4a LINE L1 -76 6045 5864 200 308 108 0 chr6 55849841 55849906 -133429648 + MIR3 SINE MIR 96 167 -41 1874 158 0 10 chr6 55850206 55850510 -133429044 + AluJb SINE Alu 1 301 -11 249 298 29 94 chr6 55851712 55851883 -133427671 + MIR SINE MIR 47 206 -56 26 0 0 0 chr6 55851883 55851909 -133427645 + AT_rich Low_complexity Low_complexity 1 26 0 28 48 0 0 chr6 55851942 55851984 -133427570 + AT_rich Low_complexity Low_complexity 1 42 0 373 286 191 14 chr6 55853327 55853474 -133426080 + MIR3 SINE MIR 31 203 -5 313 316 0 0 chr6 55854086 55854165 -133425389 - L2 LINE L2 0 3313 3235 2184 106 3 0 chr6 55854288 55854581 -133424973 - AluY SINE Alu -17 294 1 2010 107 33 0 chr6 55854779 55855082 -133424472 - AluSx SINE Alu 0 312 1 448 216 14 0 chr6 55855120 55855268 -133424286 + (TA)n Simple_repeat Simple_repeat 1 150 0 281 239 0 15 chr6 55855356 55855423 -133424131 + GA-rich Low_complexity Low_complexity 1 66 0 31 0 0 0 chr6 55857686 55857717 -133421837 + AT_rich Low_complexity Low_complexity 1 31 0 191 32 65 0 chr6 55857816 55857847 -133421707 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1675 112 47 8 chr6 55857849 55857942 -133421612 - AluSx SINE Alu 0 312 224 216 0 0 0 chr6 55857942 55857966 -133421588 + (TCC)n Simple_repeat Simple_repeat 3 26 0 1675 112 47 8 chr6 55857966 55858130 -133421424 - AluSx SINE Alu -88 224 45 38 51 0 0 chr6 55858711 55858770 -133420784 + AT_rich Low_complexity Low_complexity 1 59 0 2108 102 34 3 chr6 55859109 55859235 -133420319 + AluSx SINE Alu 1 122 -190 216 0 0 0 chr6 55859235 55859259 -133420295 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 2108 102 34 3 chr6 55859259 55859426 -133420128 + AluSx SINE Alu 122 303 -9 336 280 134 0 chr6 55859518 55859675 -133419879 - HAL1 LINE L1 -868 1639 1462 419 295 23 8 chr6 55860522 55860651 -133418903 - L2 LINE L2 0 3272 3142 2192 77 40 3 chr6 55861798 55862096 -133417458 - AluSc SINE Alu 0 309 1 1643 102 4 34 chr6 55862117 55862167 -133417387 - L1PB1 LINE L1 -4 6147 6097 2371 58 7 7 chr6 55862167 55862460 -133417094 - AluY SINE Alu -18 293 1 1643 102 4 34 chr6 55862460 55862673 -133416881 - L1PB1 LINE L1 -54 6097 5892 1975 106 12 38 chr6 55862674 55863014 -133416540 - L1PBa LINE L1 -5897 966 636 1074 164 20 0 chr6 55863016 55863211 -133416343 - L1PBa LINE L1 -6663 200 2 447 219 0 130 chr6 55864192 55864261 -133415293 + MER5A DNA MER1_type 7 52 -137 2137 102 0 20 chr6 55864261 55864577 -133414977 + AluSq SINE Alu 1 310 0 447 219 0 130 chr6 55864577 55864650 -133414904 + MER5A DNA MER1_type 52 133 -56 265 106 0 43 chr6 55865121 55865168 -133414386 - L2 LINE L2 -7 3306 3262 247 246 15 0 chr6 55865641 55865706 -133413848 + MER116 DNA Mariner 15 80 0 234 317 0 0 chr6 55865910 55865970 -133413584 - Charlie4 DNA MER1_type -10 1951 1892 470 31 0 0 chr6 55867384 55867449 -133412105 + L1PA2 LINE L1 6092 6209 0 239 208 0 0 chr6 55867449 55867502 -133412052 + A-rich Low_complexity Low_complexity 1 180 0 923 156 14 0 chr6 55867690 55867831 -133411723 - FAM SINE Alu -42 143 1 234 393 0 9 chr6 55867890 55867997 -133411557 + L3 LINE CR1 866 971 -606 424 308 45 63 chr6 55868001 55868222 -133411332 + L3 LINE CR1 1078 1294 -283 1939 201 100 40 chr6 55868225 55868858 -133410696 - L1ME LINE L1 -350 5705 5048 7170 49 0 0 chr6 55868899 55870102 -133409452 - L1PA5 LINE L1 -4 6150 4948 1687 60 0 0 chr6 55870102 55870318 -133409236 + L1PA5 LINE L1 4757 4972 -1174 619 256 57 8 chr6 55870321 55870567 -133408987 - L1ME LINE L1 -1015 5065 4808 567 227 38 92 chr6 55870623 55870861 -133408693 - L1ME LINE L1 -1421 4659 4435 * 1162 262 75 103 chr6 55870855 55871011 -133408543 - L1ME LINE L1 -3731 2349 2190 14307 137 23 12 chr6 55871011 55873403 -133406151 - Tigger1 DNA MER2_type 0 2418 1 1162 262 75 103 chr6 55873403 55873508 -133406046 - L1ME LINE L1 -3890 2190 2084 1972 150 10 10 chr6 55873508 55873815 -133405739 - AluJo SINE Alu -1 311 5 1162 262 75 103 chr6 55873815 55874249 -133405305 - L1ME LINE L1 -3996 2084 1639 265 167 0 50 chr6 55874249 55874309 -133405245 - U2 snRNA snRNA -130 58 2 1162 262 75 103 chr6 55874309 55875575 -133403979 - L1ME LINE L1 -4441 1639 389 558 206 39 0 chr6 55875581 55875683 -133403871 + FLAM_A SINE Alu 11 116 -26 592 282 74 40 chr6 55875701 55876024 -133403530 - L1ME LINE L1 -5670 400 67 13393 191 22 51 chr6 55876761 55880263 -133399291 + L1PB4 LINE L1 1747 5349 -807 1009 96 0 0 chr6 55880263 55880398 -133399156 + AluSg/x SINE Alu 175 309 -3 13393 191 22 51 chr6 55880398 55880794 -133398760 + L1PB4 LINE L1 5349 5755 -401 2289 92 0 7 chr6 55880794 55881089 -133398465 - AluSx SINE Alu -19 293 1 13393 191 22 51 chr6 55881089 55881332 -133398222 + L1PB4 LINE L1 5755 5818 -338 1801 179 3 0 chr6 55881332 55881623 -133397931 + AluSx SINE Alu 1 292 -20 13393 191 22 51 chr6 55881623 55881953 -133397601 + L1PB4 LINE L1 5818 6156 0 23 0 0 0 chr6 55883309 55883332 -133396222 + AT_rich Low_complexity Low_complexity 1 23 0 1779 220 8 6 chr6 55883429 55883793 -133395761 - MLT1A1 LTR MaLR 0 365 1 736 258 131 41 chr6 55883830 55884144 -133395410 - L1MC4a LINE L1 -1943 5865 5524 1210 186 21 38 chr6 55884392 55884629 -133394925 + AluJo SINE Alu 42 274 -38 623 253 74 0 chr6 55884655 55884817 -133394737 - MIR SINE MIR -25 237 64 28 48 0 0 chr6 55885167 55885209 -133394345 + AT_rich Low_complexity Low_complexity 1 42 0 1997 104 19 57 chr6 55887711 55887897 -133391657 - AluSq SINE Alu -7 306 135 2459 69 0 10 chr6 55887897 55888202 -133391352 - AluY SINE Alu -9 302 1 1997 104 19 57 chr6 55888202 55888331 -133391223 - AluSq SINE Alu -178 135 3 2481 33 40 0 chr6 55889386 55889685 -133389869 - AluY SINE Alu 0 311 1 591 299 18 6 chr6 55890105 55890272 -133389282 + MIR SINE MIR 5 173 -89 366 216 199 6 chr6 55890904 55891080 -133388474 - L1ME4a LINE L1 -4 6117 5908 659 286 115 17 chr6 55891108 55891457 -133388097 - L1ME4a LINE L1 -278 5843 5461 330 280 187 0 chr6 55891481 55891631 -133387923 - MIR SINE MIR -1 261 84 242 173 158 1 chr6 55891632 55891759 -133387795 - L1M2 LINE L1 -713 5438 5316 24 32 0 0 chr6 55891801 55891832 -133387722 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 55892042 55892063 -133387491 + AT_rich Low_complexity Low_complexity 1 21 0 236 352 11 0 chr6 55893009 55893100 -133386454 - MIR SINE MIR -84 124 33 21 36 0 0 chr6 55893627 55893655 -133385899 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr6 55895579 55895615 -133383939 + AT_rich Low_complexity Low_complexity 1 36 0 1621 176 40 20 chr6 55897706 55898007 -133381547 - AluJo SINE Alu -3 309 3 305 274 27 68 chr6 55898062 55898121 -133381433 - L2 LINE L2 -575 2739 2679 2260 113 0 0 chr6 55898121 55898431 -133381123 + AluY SINE Alu 1 310 -1 305 274 27 68 chr6 55898431 55898517 -133381037 - L2 LINE L2 -635 2679 2600 185 178 22 0 chr6 55900910 55900955 -133378599 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 1555 183 63 11 chr6 55901128 55901295 -133378259 - AluJb SINE Alu -13 299 109 284 0 28 0 chr6 55901295 55901331 -133378223 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1555 183 63 11 chr6 55901331 55901447 -133378107 - AluJb SINE Alu -203 109 1 3216 94 82 42 chr6 55902317 55902867 -133376687 - MER4B LTR ERV1 -36 574 3 232 420 51 0 chr6 55902884 55903022 -133376532 - L3b LINE CR1 -45 1538 1394 186 222 37 19 chr6 55903898 55903952 -133375602 + L2 LINE L2 3210 3264 -8 227 254 34 0 chr6 55905682 55905741 -133373813 + Zaphod DNA AcHobo 1 61 -3970 2230 205 58 55 chr6 55905744 55905819 -133373735 + Zaphod DNA AcHobo 178 251 -3780 2113 158 56 0 chr6 55905819 55906212 -133373342 + L1MB4 LINE L1 5757 6171 -9 2230 205 58 55 chr6 55906212 55906742 -133372812 + Zaphod DNA AcHobo 251 785 -3246 1931 185 172 61 chr6 55906738 55907278 -133372276 + Zaphod DNA AcHobo 2408 3043 -988 * 2199 124 0 3 chr6 55907278 55907585 -133371969 - AluSx SINE Alu -6 306 1 1931 185 172 61 chr6 55907585 55907736 -133371818 + Zaphod DNA AcHobo 3043 3176 -855 380 318 7 20 chr6 55908289 55908442 -133371112 - L1ME LINE L1 -518 5603 5453 185 228 149 70 chr6 55908592 55908706 -133370848 + MIR SINE MIR 114 236 -26 252 245 137 0 chr6 55908968 55909070 -133370484 + L1M4 LINE L1 4726 4841 -1305 402 21 0 0 chr6 55909124 55909171 -133370383 + (CA)n Simple_repeat Simple_repeat 1 47 0 2459 90 0 0 chr6 55909845 55910156 -133369398 + AluY SINE Alu 1 311 0 2069 136 0 3 chr6 55910607 55910902 -133368652 - AluSx SINE Alu -18 294 1 2261 90 3 3 chr6 55911516 55911815 -133367739 - AluSg SINE Alu -11 299 1 42690 48 3 2 chr6 55912121 55918253 -133361301 - L1PA4 LINE L1 -11 6144 7 2135 110 7 3 chr6 55918582 55918890 -133360664 - AluSg SINE Alu -1 309 1 1097 259 222 5 chr6 55919673 55920110 -133359444 - MLT1F LTR MaLR -9 533 2 322 311 19 19 chr6 55920528 55920631 -133358923 + L2 LINE L2 3149 3251 -21 184 222 0 22 chr6 55921321 55921366 -133358188 + MIR SINE MIR 180 223 -39 637 269 29 0 chr6 55921815 55921986 -133357568 + MIR SINE MIR 86 261 -1 267 356 48 0 chr6 55921993 55922097 -133357457 - MIR SINE MIR -66 142 34 287 265 10 20 chr6 55922809 55922907 -133356647 - MARNA DNA Mariner -126 460 364 680 203 39 0 chr6 55922910 55923038 -133356516 + FLAM_A SINE Alu 1 133 0 40 21 0 0 chr6 55923415 55923462 -133356092 + AT_rich Low_complexity Low_complexity 1 47 0 28 0 0 0 chr6 55923529 55923557 -133355997 + AT_rich Low_complexity Low_complexity 1 28 0 7688 18 9 0 chr6 55923591 55925067 -133354487 + L1PA3 LINE L1 4671 6155 0 671 273 37 27 chr6 55925477 55925664 -133353890 + MIR3 SINE MIR 12 200 -8 1535 184 35 67 chr6 55925757 55926160 -133353394 - MLT1B LTR MaLR 0 390 1 3169 153 46 7 chr6 55926512 55927119 -133352435 - L1MB4 LINE L1 0 6180 5550 2717 55 61 0 chr6 55927156 55927518 -133352036 - L1PA7 LINE L1 -2 6152 5769 41931 38 2 1 chr6 55927529 55933669 -133345885 - L1PA3 LINE L1 -5 6150 6 29587 105 25 60 chr6 55933672 55939678 -133339876 - L1PA7 LINE L1 -373 5781 1 363 210 10 23 chr6 55939657 55939767 -133339787 - L1MB4 LINE L1 -540 5581 5476 * 2243 115 0 7 chr6 55940811 55941115 -133338439 - AluSx SINE Alu -10 302 1 316 198 59 0 chr6 55941115 55941216 -133338338 + L1ME4a LINE L1 5788 5894 -227 228 67 0 0 chr6 55941433 55941463 -133338091 + (T)n Simple_repeat Simple_repeat 1 30 0 493 161 193 0 chr6 55941464 55941625 -133337929 - L1M4 LINE L1 -3095 3051 2860 41160 31 21 1 chr6 55941634 55947665 -133331889 - L1PA2 LINE L1 -1 6154 1 2148 140 0 6 chr6 55947671 55947985 -133331569 - AluJb SINE Alu 0 312 1 1716 130 45 0 chr6 55950898 55951145 -133328409 + AluSx SINE Alu 40 297 -15 522 272 9 0 chr6 55951846 55951960 -133327594 - FLAM_A SINE Alu -17 116 2 21 0 0 0 chr6 55952169 55952190 -133327364 + AT_rich Low_complexity Low_complexity 1 21 0 181 179 0 0 chr6 55952442 55952470 -133327084 + L2 LINE L2 1760 1787 -1527 1931 152 41 36 chr6 55952529 55952891 -133326663 + THE1B LTR MaLR 1 364 0 8491 87 166 7 chr6 55952891 55954254 -133325300 + THE1B-int LTR MaLR 1 1580 0 1930 122 37 37 chr6 55954254 55954608 -133324946 + THE1B LTR MaLR 1 354 -10 1083 307 18 58 chr6 55954613 55955115 -133324439 + L2 LINE L2 2804 3285 -28 2224 100 3 28 chr6 55955585 55955905 -133323649 - AluSq SINE Alu -1 312 1 256 338 65 53 chr6 55955964 55956227 -133323327 - L2 LINE L2 -189 3083 2818 202 299 35 90 chr6 55956572 55956610 -133322944 - MIR SINE MIR -56 152 113 2247 130 0 9 chr6 55956610 55956925 -133322629 + AluSx SINE Alu 1 312 0 1785 167 43 0 chr6 55956934 55957233 -133322321 + AluJo SINE Alu 1 312 0 202 299 35 90 chr6 55957233 55957328 -133322226 - MIR SINE MIR -103 105 17 615 222 123 12 chr6 55957733 55957895 -133321659 + MIR3 SINE MIR 23 202 -6 321 215 0 0 chr6 55959663 55959728 -133319826 - MER116 DNA Mariner -14 66 2 560 210 112 56 chr6 55959858 55960001 -133319553 + MIR SINE MIR 110 260 -2 601 360 54 30 chr6 55960033 55960402 -133319152 - L2 LINE L2 0 3272 2895 242 252 10 87 chr6 55963361 55963464 -133316090 - L3 LINE CR1 -250 1327 1233 352 279 48 0 chr6 55963900 55964004 -133315550 - L2 LINE L2 -614 2700 2592 289 269 20 3 chr6 55964286 55964402 -133315152 + MER34B LTR ERV1 26 128 -428 256 256 11 11 chr6 55964476 55964566 -133314988 + LTR48 LTR ERV1 396 485 -302 382 215 105 52 chr6 55964594 55964766 -133314788 + LTR48 LTR ERV1 607 787 0 765 177 0 0 chr6 55964786 55964910 -133314644 - AluJo SINE Alu -178 134 11 809 222 195 14 chr6 55964991 55965212 -133314342 + MIR SINE MIR 2 262 0 522 0 0 0 chr6 55967501 55967559 -133311995 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 207 286 18 0 chr6 55967766 55967822 -133311732 + MIR3 SINE MIR 145 201 -7 2815 0 0 3 chr6 55968778 55969084 -133310470 + AluYa5 SINE Alu 1 305 -6 217 255 0 0 chr6 55969170 55969217 -133310337 - L2 LINE L2 -4 3309 3263 385 339 48 7 chr6 55969422 55969615 -133309939 + MIR SINE MIR 16 212 -50 449 154 301 44 chr6 55969843 55969979 -133309575 - MER5B DNA MER1_type -1 177 7 2264 116 3 16 chr6 55970038 55970349 -133309205 + AluSx SINE Alu 1 307 -5 2446 88 0 0 chr6 55970520 55970817 -133308737 + AluSx SINE Alu 1 297 -15 2144 124 7 0 chr6 55971377 55971676 -133307878 + AluSx SINE Alu 1 301 -11 4385 105 91 8 chr6 55972125 55972850 -133306704 - LTR1 LTR ERV1 0 785 1 306 241 108 12 chr6 55973054 55973137 -133306417 + L2 LINE L2 3181 3271 -1 1877 211 35 35 chr6 55973389 55973911 -133305643 - L1ME1 LINE L1 0 6166 5645 * 2928 232 96 15 chr6 55973908 55974341 -133305213 - L1ME1 LINE L1 -982 5164 4768 447 68 0 0 chr6 55974341 55974400 -133305154 + (TG)n Simple_repeat Simple_repeat 2 60 0 2928 232 96 15 chr6 55974400 55975048 -133304506 - L1ME1 LINE L1 -1378 4768 3995 30 69 0 0 chr6 55975868 55975926 -133303628 + AT_rich Low_complexity Low_complexity 1 58 0 503 294 201 20 chr6 55976204 55976497 -133303057 + L2 LINE L2 2968 3313 0 302 182 0 0 chr6 55976843 55976898 -133302656 - MSTB2 LTR MaLR -374 83 29 206 274 164 14 chr6 55976980 55977053 -133302501 - L2 LINE L2 -4 3309 3226 1047 94 123 0 chr6 55977103 55977273 -133302281 - MSTB LTR MaLR -2 424 234 2549 37 3 0 chr6 55978307 55978604 -133300950 + AluY SINE Alu 1 298 -13 32 26 0 0 chr6 55978664 55978703 -133300851 + AT_rich Low_complexity Low_complexity 1 39 0 1326 173 52 28 chr6 55978738 55978987 -133300567 + AluJb SINE Alu 40 294 -18 252 114 0 0 chr6 55980093 55980128 -133299426 + U2 snRNA snRNA 1 35 -153 379 313 17 0 chr6 55980931 55981046 -133298508 - L2 LINE L2 0 3313 3197 408 290 40 16 chr6 55983590 55983714 -133295840 + MIR3 SINE MIR 82 208 0 355 280 63 10 chr6 55984114 55984239 -133295315 + MER5B DNA MER1_type 34 167 -22 289 308 56 28 chr6 55984851 55984958 -133294596 + L2 LINE L2 3154 3263 -9 589 279 29 12 chr6 55990688 55990860 -133288694 - MIR3 SINE MIR -9 199 25 22 56 0 0 chr6 55991558 55991594 -133287960 + AT_rich Low_complexity Low_complexity 1 36 0 490 324 87 0 chr6 55992600 55992819 -133286735 - MIR SINE MIR -21 241 4 762 140 0 0 chr6 55993535 55993642 -133285912 - FLAM_C SINE Alu -34 109 3 730 176 8 0 chr6 55993763 55993888 -133285666 - FLAM_A SINE Alu -7 126 1 521 272 67 70 chr6 55994069 55994276 -133285278 - REP3 LTR ERV -47 515 308 2503 71 0 3 chr6 55994276 55994587 -133284967 - AluSq SINE Alu -3 310 1 521 272 67 70 chr6 55994587 55994706 -133284848 - REP3 LTR ERV -254 308 190 2047 119 56 0 chr6 55995145 55995430 -133284124 - AluSx SINE Alu -11 301 1 1806 159 0 3 chr6 55997114 55997404 -133282150 + AluJo SINE Alu 1 289 -23 824 290 18 25 chr6 55997410 55997696 -133281858 + L2 LINE L2 3028 3311 -2 1969 148 14 0 chr6 55998034 55998325 -133281229 - AluJb SINE Alu -17 295 1 1598 169 68 11 chr6 55998470 55998748 -133280806 - AluJo SINE Alu -10 302 9 5832 221 128 58 chr6 55998793 56001205 -133278349 - L1ME1 LINE L1 -17 6083 3840 1711 160 7 31 chr6 56001205 56001493 -133278061 - AluJo SINE Alu -30 282 2 5832 221 128 58 chr6 56001493 56002371 -133277183 - L1ME1 LINE L1 -2260 3840 3024 523 99 0 25 chr6 56002371 56002452 -133277102 - MADE1 DNA Mariner -1 79 1 5832 221 128 58 chr6 56002452 56002934 -133276620 - L1ME1 LINE L1 -3076 3024 2044 22 0 0 0 chr6 56003030 56003052 -133276502 + AT_rich Low_complexity Low_complexity 1 22 0 198 103 0 0 chr6 56003160 56003189 -133276365 + (CA)n Simple_repeat Simple_repeat 2 30 0 2162 143 0 0 chr6 56003289 56003597 -133275957 + AluSx SINE Alu 1 308 -4 2411 108 8 3 chr6 56003622 56003983 -133275571 - LTR57 LTR ERVL -42 369 7 334 262 52 14 chr6 56004144 56004354 -133275200 - L1ME1 LINE L1 -4895 1366 1149 459 304 76 34 chr6 56004359 56004596 -133274958 - L1ME1 LINE L1 -4984 1086 840 1837 147 10 24 chr6 56004776 56005069 -133274485 + AluJo SINE Alu 1 289 -23 1686 208 156 31 chr6 56005645 56006184 -133273370 + MLT1E2 LTR MaLR 21 626 0 1312 272 162 15 chr6 56006259 56006789 -133272765 - MLT2E LTR ERVL -2 626 19 438 198 28 9 chr6 56006811 56006917 -133272637 - Ricksha DNA DNA -2901 345 238 2084 134 89 7 chr6 56006941 56007344 -133272210 + L1MC3 LINE L1 7329 7768 -17 2318 84 0 10 chr6 56007344 56007640 -133271914 - AluSc SINE Alu -16 293 1 2084 134 89 7 chr6 56007640 56007653 -133271901 + L1MC3 LINE L1 7768 7779 -6 751 233 6 0 chr6 56007865 56008041 -133271513 - ERVL LTR ERVL -346 5418 5242 411 237 8 17 chr6 56008051 56008169 -133271385 - MLT1H1 LTR MaLR 0 555 439 304 308 39 58 chr6 56008346 56008502 -133271052 + MIR3 SINE MIR 47 199 -9 1679 163 80 18 chr6 56010283 56010669 -133268885 + L1MC4 LINE L1 6761 7170 -872 342 198 49 0 chr6 56010680 56010761 -133268793 + L1MC4a LINE L1 7161 7245 -563 436 339 0 23 chr6 56013399 56013529 -133266025 + MER91A DNA MER1_type 17 143 -53 1603 189 126 73 chr6 56015281 56015799 -133263755 - MLT1H LTR MaLR -2 547 3 1735 136 9 76 chr6 56015822 56016139 -133263415 + AluJo SINE Alu 1 296 -16 345 257 79 10 chr6 56016225 56016326 -133263228 - MIR3 SINE MIR -54 154 47 180 238 0 48 chr6 56016334 56016376 -133263178 - MIR SINE MIR -139 69 30 370 208 189 0 chr6 56018511 56018617 -133260937 - MIR SINE MIR -56 206 81 188 408 61 0 chr6 56018840 56018938 -133260616 - MIR SINE MIR -69 139 36 2190 82 0 0 chr6 56019118 56019385 -133260169 - AluSx SINE Alu -2 310 44 468 283 22 14 chr6 56019709 56019847 -133259707 + MIR SINE MIR 35 173 -89 334 295 33 33 chr6 56020234 56020432 -133259122 - MIR SINE MIR -50 212 17 286 246 25 59 chr6 56020709 56020827 -133258727 + MIR SINE MIR 70 183 -79 435 318 23 12 chr6 56020854 56021027 -133258527 - L2 LINE L2 -25 3288 3114 241 255 103 76 chr6 56021074 56021219 -133258335 + L1MC4a LINE L1 6209 6357 -1451 1097 211 62 105 chr6 56021299 56021834 -133257720 + L1MC5 LINE L1 6614 7125 -836 5761 243 59 42 chr6 56022361 56024606 -133254948 - L1M4c LINE L1 -4660 2299 11 250 289 209 32 chr6 56024861 56025048 -133254506 - MIR SINE MIR -33 229 10 5187 169 88 18 chr6 56025644 56026297 -133253257 - Tigger3b DNA MER2_type -1800 1228 623 231 114 0 0 chr6 56026297 56026332 -133253222 + (CA)n Simple_repeat Simple_repeat 1 35 0 5187 169 88 18 chr6 56026332 56026824 -133252730 - Tigger3b DNA MER2_type -2405 623 2 31 0 0 0 chr6 56026831 56026862 -133252692 + AT_rich Low_complexity Low_complexity 1 31 0 2099 49 11 0 chr6 56026862 56027125 -133252429 - L1PA3 LINE L1 -3 6152 5887 9327 35 0 1 chr6 56027228 56028378 -133251176 - L1P LINE L1 -1985 4161 3013 23 0 0 0 chr6 56031306 56031329 -133248225 + AT_rich Low_complexity Low_complexity 1 23 0 1035 176 75 0 chr6 56031691 56031878 -133247676 + MER8 DNA MER2_type 39 239 0 5767 81 33 13 chr6 56031966 56032828 -133246726 + L1PA14 LINE L1 5298 6177 0 1440 221 73 64 chr6 56033528 56033989 -133245565 + MLT2B1 LTR ERVL 1 373 -41 6376 95 10 0 chr6 56034122 56035276 -133244278 + L1PA10 LINE L1 5003 6167 -1 189 0 0 0 chr6 56035555 56035576 -133243978 + (T)n Simple_repeat Simple_repeat 1 21 0 42547 34 22 1 chr6 56036109 56042138 -133237416 + L1PA2 LINE L1 1 6155 0 218 56 28 0 chr6 56042639 56042675 -133236879 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 2270 83 33 3 chr6 56044123 56044425 -133235129 + AluSq SINE Alu 1 311 -2 401 295 64 6 chr6 56045697 56045853 -133233701 - MIR SINE MIR -25 237 73 307 238 48 19 chr6 56045899 56046004 -133233550 - HsTC2 DNA Tc2 -6 1892 1785 419 196 159 0 chr6 56046005 56046112 -133233442 + MER5C DNA MER1_type 1 124 -200 224 222 222 0 chr6 56046123 56046204 -133233350 + MER5C DNA MER1_type 226 324 0 919 209 127 60 chr6 56046206 56046537 -133233017 - HsTC2 DNA Tc2 -113 1785 1257 332 241 48 0 chr6 56047035 56047118 -133232436 - L1ME4a LINE L1 -12 6109 6023 332 314 66 8 chr6 56047797 56047918 -133231636 + L1ME2 LINE L1 4906 5033 -1113 670 218 22 11 chr6 56048003 56048228 -133231326 + L1ME2 LINE L1 5267 5494 -670 640 254 114 38 chr6 56048230 56048466 -133231088 + L1ME2 LINE L1 5883 6136 -28 189 205 0 0 chr6 56048566 56048605 -133230949 - L2 LINE L2 -4 3268 3230 21 36 0 0 chr6 56049694 56049722 -133229832 + AT_rich Low_complexity Low_complexity 1 28 0 2184 147 0 0 chr6 56051005 56051317 -133228237 + AluJo SINE Alu 1 312 0 1070 152 0 0 chr6 56051680 56051831 -133227723 - AluSq SINE Alu -160 153 3 2263 237 14 17 chr6 56052039 56052360 -133227194 - L1M1 LINE L1 -4170 3396 3076 198 71 0 0 chr6 56052360 56052388 -133227166 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2263 237 14 17 chr6 56052388 56052686 -133226868 - L1M1 LINE L1 -4490 3076 2577 1959 113 4 4 chr6 56052690 56052965 -133226589 + AluY SINE Alu 2 276 -35 379 191 16 24 chr6 56053028 56053154 -133226400 + GA-rich Low_complexity Low_complexity 2 126 0 5758 146 34 5 chr6 56053171 56054693 -133224861 + L1MA3 LINE L1 4702 6265 -40 1092 194 83 24 chr6 56056669 56056921 -133222633 + AluJo SINE Alu 22 288 -24 213 65 0 0 chr6 56059023 56059054 -133220500 + (T)n Simple_repeat Simple_repeat 1 31 0 198 406 31 8 chr6 56061751 56061879 -133217675 - L2 LINE L2 -4 3268 3138 2714 237 54 51 chr6 56062643 56064372 -133215182 - L1ME1 LINE L1 -41 6059 4343 4015 126 60 6 chr6 56064372 56065022 -133214532 - HSMAR2 DNA Mariner 0 1302 618 1551 149 19 0 chr6 56065141 56065410 -133214144 - HSMAR2 DNA Mariner -1028 274 1 889 270 74 20 chr6 56065438 56065842 -133213712 - L1ME1 LINE L1 -1778 4302 3877 1072 311 33 16 chr6 56065867 56066255 -133213299 - L1ME1 LINE L1 -2383 3697 3298 1339 142 0 45 chr6 56066255 56066501 -133213053 + MER46A DNA MER2_type 1 235 -1 1072 311 33 16 chr6 56066501 56066600 -133212954 - L1ME1 LINE L1 -2782 3298 3202 1398 247 125 69 chr6 56066625 56067190 -133212364 - MLT1E2 LTR MaLR -2 622 4 859 278 132 0 chr6 56067196 56067567 -133211987 - L1ME1 LINE L1 -3076 3004 2585 216 0 0 0 chr6 56067611 56067635 -133211919 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 694 213 41 15 chr6 56067646 56067843 -133211711 - L1ME1 LINE L1 -3574 2506 2305 374 249 190 32 chr6 56067848 56068069 -133211485 - L1ME1 LINE L1 -4341 1920 1665 1048 280 77 45 chr6 56068114 56069294 -133210260 - L1ME1 LINE L1 -4565 1515 311 1764 211 51 16 chr6 56069371 56069822 -133209732 + MLT1C LTR MaLR 1 467 0 207 358 9 46 chr6 56070071 56070180 -133209374 - MIR SINE MIR -81 127 23 348 302 47 23 chr6 56070344 56070473 -133209081 - L2 LINE L2 -238 3075 2944 950 153 12 24 chr6 56070490 56070660 -133208894 + BC200 scRNA scRNA 1 168 -32 427 269 17 47 chr6 56073636 56073818 -133205736 + MER58C DNA MER1_type 38 212 -3 2247 114 0 0 chr6 56075163 56075461 -133204093 - AluSg SINE Alu -12 298 1 409 353 131 5 chr6 56075630 56075851 -133203703 + MIR SINE MIR 14 262 0 268 111 0 0 chr6 56075962 56075998 -133203556 + U2 snRNA snRNA 1 36 -152 198 376 24 0 chr6 56076523 56076608 -133202946 + MER5B DNA MER1_type 92 178 0 1052 128 0 0 chr6 56076918 56077059 -133202495 + AluSq SINE Alu 144 284 -29 244 318 255 21 chr6 56077111 56077397 -133202157 + L2 LINE L2 2961 3313 0 368 264 35 28 chr6 56078425 56078569 -133200985 + MER103 DNA DNA 7 151 -15 1977 55 4 0 chr6 56078688 56078924 -133200630 - AluY SINE Alu -22 289 53 201 326 88 22 chr6 56078973 56079154 -133200400 - L2 LINE L2 -863 2451 2259 206 62 31 0 chr6 56080500 56080532 -133199022 + (GA)n Simple_repeat Simple_repeat 2 34 0 1545 209 31 14 chr6 56081252 56081611 -133197943 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr6 56082235 56082256 -133197298 + AT_rich Low_complexity Low_complexity 1 21 0 2169 129 3 0 chr6 56082304 56082607 -133196947 - AluSx SINE Alu -8 304 1 403 307 33 36 chr6 56082863 56083166 -133196388 + L1ME LINE L1 5484 5785 -336 32 67 0 0 chr6 56083191 56083251 -133196303 + AT_rich Low_complexity Low_complexity 1 60 0 994 188 128 23 chr6 56083845 56084111 -133195443 + MER58B DNA MER1_type 46 339 -2 574 92 23 0 chr6 56084265 56084352 -133195202 - MSTB LTR MaLR 0 426 338 23 0 0 0 chr6 56084793 56084816 -133194738 + AT_rich Low_complexity Low_complexity 1 23 0 1705 167 52 84 chr6 56085324 56085532 -133194022 + MSTA LTR MaLR 1 214 -214 1661 122 8 8 chr6 56085532 56085786 -133193768 + AluSx SINE Alu 40 293 -19 1705 167 52 84 chr6 56085786 56086019 -133193535 + MSTA LTR MaLR 214 428 0 1199 171 9 22 chr6 56086652 56086880 -133192674 - AluJo SINE Alu -20 292 68 3239 190 65 74 chr6 56088109 56088871 -133190683 + L1MA8 LINE L1 5034 5773 -518 2028 62 0 0 chr6 56088871 56089111 -133190443 + AluY SINE Alu 42 281 -30 3239 190 65 74 chr6 56089111 56089608 -133189946 + L1MA8 LINE L1 5773 6273 -18 267 234 96 32 chr6 56090236 56090330 -133189224 - L2 LINE L2 -5 3308 3209 2415 125 8 3 chr6 56092393 56092754 -133186800 - THE1B LTR MaLR -1 363 1 990 314 69 21 chr6 56093592 56093747 -133185807 - L1M4 LINE L1 -766 5380 5234 2410 230 66 13 chr6 56093747 56094365 -133185189 + MER82 DNA MER2_type 3 653 0 990 314 69 21 chr6 56094365 56094718 -133184836 - L1M4 LINE L1 -912 5234 4824 342 67 0 0 chr6 56094718 56094763 -133184791 + (TG)n Simple_repeat Simple_repeat 2 46 0 990 314 69 21 chr6 56094763 56094996 -133184558 - L1M4 LINE L1 -1322 4824 4603 1032 73 0 0 chr6 56096190 56096313 -133183241 + AluSg SINE Alu 1 123 -187 282 391 16 0 chr6 56096487 56096615 -133182939 - L2 LINE L2 -527 2787 2658 2335 87 0 0 chr6 56097137 56097460 -133182094 + AluSq SINE Alu 1 323 0 191 291 156 81 chr6 56097553 56097848 -133181706 - L2 LINE L2 -41 3231 2915 325 317 139 22 chr6 56098004 56098408 -133181146 + L1M4 LINE L1 4029 4479 -1667 497 294 60 18 chr6 56098940 56099222 -133180332 + L1ME2 LINE L1 106 399 -5997 1283 248 44 33 chr6 56099641 56099829 -133179725 + L1ME2 LINE L1 2146 2331 -3884 3150 178 38 31 chr6 56099829 56099906 -133179648 + L1MA4 LINE L1 5579 5654 -646 216 97 0 0 chr6 56099906 56099937 -133179617 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 3150 178 38 31 chr6 56099937 56100481 -133179073 + L1MA4 LINE L1 5654 6208 -92 2300 92 3 0 chr6 56100481 56100776 -133178778 + AluY SINE Alu 1 296 -15 3150 178 38 31 chr6 56100776 56100867 -133178687 + L1MA4 LINE L1 6208 6297 -3 1283 248 44 33 chr6 56100867 56101365 -133178189 + L1ME2 LINE L1 2331 2840 -3375 373 281 137 47 chr6 56101356 56101801 -133177753 + L1ME2 LINE L1 3311 3795 -2420 * 1141 263 116 28 chr6 56101783 56102292 -133177262 + L1ME2 LINE L1 5656 6209 -24 2051 113 4 0 chr6 56102519 56102793 -133176761 - AluSx SINE Alu -37 275 1 1108 162 29 54 chr6 56104675 56104916 -133174638 - MER46A DNA MER2_type 0 236 2 555 284 33 0 chr6 56106466 56106649 -133172905 - L1ME3A LINE L1 -61 6109 5921 2519 60 0 0 chr6 56106651 56106951 -133172603 + AluY SINE Alu 1 300 -11 262 215 0 31 chr6 56107006 56107071 -133172483 - MLT1I LTR MaLR -16 574 512 432 272 40 25 chr6 56107219 56107537 -133172017 - MLT1I LTR MaLR -43 366 6 948 330 81 34 chr6 56107747 56108366 -133171188 + HERVL LTR ERVL 2618 3265 -2389 340 366 6 0 chr6 56108438 56108602 -133170952 + HERVL LTR ERVL 3422 3586 -2178 238 301 27 0 chr6 56109818 56109911 -133169643 - MIR3 SINE MIR -24 184 87 2283 51 3 0 chr6 56110447 56110741 -133168813 + L1PA5 LINE L1 5860 6154 0 429 289 134 34 chr6 56110766 56111005 -133168549 + MLT1J2 LTR MaLR 188 450 0 1587 209 112 5 chr6 56112977 56113413 -133166141 + L1MA9 LINE L1 5792 6274 -38 392 250 0 46 chr6 56113453 56113561 -133165993 + AluJo SINE Alu 120 222 -80 22 0 0 0 chr6 56113565 56113587 -133165967 + AT_rich Low_complexity Low_complexity 1 22 0 186 412 10 10 chr6 56114286 56114383 -133165171 - MIR3 SINE MIR -54 154 58 258 343 128 42 chr6 56114512 56114631 -133164923 - L2 LINE L2 -644 2670 2563 750 206 103 49 chr6 56114631 56114854 -133164700 - MER46A DNA MER2_type -1 235 1 258 343 128 42 chr6 56114854 56115046 -133164508 - L2 LINE L2 -751 2563 2332 2192 119 3 3 chr6 56116282 56116584 -133162970 - AluSc SINE Alu -7 302 1 2433 106 0 14 chr6 56117277 56117644 -133161910 - L1PB1 LINE L1 -1 6150 5789 1531 143 15 11 chr6 56117644 56117917 -133161637 - L1PB1 LINE L1 -605 5546 5273 869 254 4 48 chr6 56118024 56118252 -133161302 - MER58A DNA MER1_type -6 218 1 1610 258 39 33 chr6 56118371 56118886 -133160668 - LTR40a LTR ERVL 0 519 2 1370 192 51 7 chr6 56119996 56120272 -133159282 + AluJo SINE Alu 8 295 -17 384 216 88 0 chr6 56120314 56120416 -133159138 - L1MA4A LINE L1 -6 6297 6187 4223 155 47 4 chr6 56122873 56123616 -133155938 + L1PA15 LINE L1 5391 6165 0 4369 105 30 103 chr6 56123888 56124234 -133155320 - L1MA3 LINE L1 -56 6249 5879 2103 141 0 0 chr6 56124234 56124533 -133155021 - AluSx SINE Alu -13 299 1 4369 105 30 103 chr6 56124533 56125059 -133154495 - L1MA3 LINE L1 -426 5879 5441 2090 126 16 10 chr6 56125059 56125369 -133154185 - AluSx SINE Alu 0 312 1 351 227 136 0 chr6 56125390 56125478 -133154076 + MER63 DNA MER1_type 961 1060 0 2579 185 79 23 chr6 56126066 56126110 -133153444 - MER73 LTR ERVL 0 644 604 2360 82 0 3 chr6 56126110 56126414 -133153140 - AluSx SINE Alu -9 303 1 2579 185 79 23 chr6 56126414 56126979 -133152575 - MER73 LTR ERVL -40 604 1 233 342 86 8 chr6 56127312 56127429 -133152125 - L2 LINE L2 -4 3268 3143 2137 125 3 0 chr6 56127599 56127902 -133151652 - AluSp SINE Alu -9 304 1 290 299 60 54 chr6 56127906 56128073 -133151481 - L2 LINE L2 -597 2717 2550 412 352 51 25 chr6 56128134 56128558 -133150996 + LTR16B LTR ERVL 41 450 0 452 217 70 26 chr6 56129110 56129225 -133150329 + MIR SINE MIR 106 225 -37 399 216 0 0 chr6 56129294 56129405 -133150149 + GA-rich Low_complexity Low_complexity 1 111 0 2654 190 91 12 chr6 56129709 56130272 -133149282 + MER21B LTR ERV1 1 607 -256 1444 212 14 3 chr6 56130385 56130673 -133148881 + MER21B LTR ERV1 572 862 -1 3873 38 2 0 chr6 56130678 56131151 -133148403 + L1PA4 LINE L1 5681 6154 -1 1127 89 0 0 chr6 56131219 56131365 -133148189 - AluSg/x SINE Alu -6 306 161 223 240 21 94 chr6 56133337 56133433 -133146121 - MIR SINE MIR -70 192 104 585 362 60 29 chr6 56134212 56134707 -133144847 + MERVL LTR ERVL 4011 4562 -984 578 267 122 30 chr6 56134719 56135194 -133144360 - L1M4 LINE L1 -1305 4841 4323 1971 58 4 4 chr6 56135204 56135461 -133144093 + L1PA4 LINE L1 5897 6153 -2 259 291 123 13 chr6 56135549 56135776 -133143778 - L1M4 LINE L1 -2499 3647 3396 1382 203 14 17 chr6 56135911 56136206 -133143348 - AluSp SINE Alu -18 295 2 259 289 10 19 chr6 56136550 56136654 -133142900 + GA-rich Low_complexity Low_complexity 3 105 0 189 74 0 0 chr6 56136699 56136726 -133142828 + (CCAA)n Simple_repeat Simple_repeat 3 29 0 2064 147 33 25 chr6 56136868 56137229 -133142325 + THE1B LTR MaLR 1 364 0 675 224 86 11 chr6 56137828 56138002 -133141552 + MER5A DNA MER1_type 2 188 -1 855 196 6 11 chr6 56138010 56138189 -133141365 - MER5B DNA MER1_type 0 178 1 456 370 17 40 chr6 56138972 56139493 -133140061 + MERVL LTR ERVL 1414 1922 -3842 1526 173 42 9 chr6 56139599 56139934 -133139620 + MLT2C2 LTR ERVL 5 345 -52 238 268 18 0 chr6 56139940 56139996 -133139558 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 2156 104 0 10 chr6 56140097 56140386 -133139168 - AluSg SINE Alu -21 289 4 528 307 18 6 chr6 56140480 56140643 -133138911 + MERVL LTR ERVL 3371 3535 -1950 391 320 89 20 chr6 56140754 56141181 -133138373 + MERVL LTR ERVL 3710 4212 -1442 613 321 92 22 chr6 56141356 56141802 -133137752 + MERVL LTR ERVL 4523 4999 -765 3001 222 42 47 chr6 56142941 56143839 -133135715 - L1ME1 LINE L1 -19 6147 5254 1117 257 172 27 chr6 56143839 56144614 -133134940 - L1ME1 LINE L1 -1446 4700 3814 270 0 0 0 chr6 56144689 56144715 -133134839 + (CA)n Simple_repeat Simple_repeat 1 56 0 270 0 0 0 chr6 56144715 56144745 -133134809 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 35 0 0 chr6 56144804 56144833 -133134721 + AT_rich Low_complexity Low_complexity 1 29 0 5433 143 19 11 chr6 56144899 56145830 -133133724 - L1MA5 LINE L1 -5 6295 5357 1001 181 48 13 chr6 56146116 56146343 -133133211 + L1MA3 LINE L1 6054 6288 -17 21 57 0 0 chr6 56146381 56146416 -133133138 + AT_rich Low_complexity Low_complexity 1 35 0 579 246 113 20 chr6 56146696 56146891 -133132663 + L2 LINE L2 3101 3313 0 7476 190 31 26 chr6 56147310 56148450 -133131104 + L1PA16 LINE L1 3371 4504 -1662 2236 95 0 0 chr6 56148450 56148775 -133130779 - AluSg SINE Alu 0 325 1 7476 190 31 26 chr6 56148775 56150409 -133129145 + L1PA16 LINE L1 4504 6157 -9 34 0 0 0 chr6 56150409 56150443 -133129111 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr6 56150537 56150559 -133128995 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr6 56152107 56152139 -133127415 + AT_rich Low_complexity Low_complexity 1 32 0 314 269 188 13 chr6 56153750 56153899 -133125655 - MIR SINE MIR -56 206 32 212 287 127 86 chr6 56154756 56155080 -133124474 + L2 LINE L2 2305 2641 -673 253 125 21 21 chr6 56156686 56156734 -133122820 - L3 LINE CR1 -3 1574 1527 490 273 22 7 chr6 56156815 56156954 -133122600 + MIR SINE MIR 51 191 -71 31 0 0 0 chr6 56157174 56157205 -133122349 + AT_rich Low_complexity Low_complexity 1 31 0 2259 109 3 0 chr6 56157754 56158057 -133121497 + AluSq SINE Alu 1 304 -9 23 0 0 0 chr6 56158508 56158531 -133121023 + AT_rich Low_complexity Low_complexity 1 23 0 201 343 0 0 chr6 56158621 56158691 -133120863 + MIR SINE MIR 187 256 -6 333 219 0 0 chr6 56161476 56161549 -133118005 + MER116 DNA Mariner 6 78 -2 215 338 0 0 chr6 56161550 56161618 -133117936 + MIR3 SINE MIR 141 208 0 5111 161 48 30 chr6 56165270 56165712 -133113842 + L1MA5 LINE L1 4887 5319 -981 777 182 8 0 chr6 56165712 56165844 -133113710 + FLAM_A SINE Alu 1 133 0 5111 161 48 30 chr6 56165844 56166429 -133113125 + L1MA5 LINE L1 5319 5956 -344 2374 80 3 0 chr6 56166429 56166731 -133112823 + AluSp SINE Alu 1 303 -10 5111 161 48 30 chr6 56166731 56167079 -133112475 + L1MA5 LINE L1 5956 6296 -4 294 276 37 30 chr6 56167253 56167387 -133112167 + L1ME1 LINE L1 5977 6111 -55 22 0 0 0 chr6 56167429 56167451 -133112103 + AT_rich Low_complexity Low_complexity 1 22 0 396 242 132 57 chr6 56167690 56167947 -133111607 + L1M4 LINE L1 1234 1515 -5344 2091 120 13 3 chr6 56167947 56168246 -133111308 + AluSx SINE Alu 3 304 -8 396 242 132 57 chr6 56168246 56168269 -133111285 + L1M4 LINE L1 1515 1535 -5324 363 275 70 41 chr6 56168770 56168941 -133110613 + L1M4 LINE L1 1762 1937 -5201 1078 272 66 21 chr6 56169057 56169591 -133109963 + L1M4 LINE L1 1947 2687 -4451 411 294 81 2 chr6 56169691 56169938 -133109616 - L1MDa LINE L1 -4679 1703 1320 296 286 78 38 chr6 56169941 56170608 -133108946 + L1M4 LINE L1 5176 5869 -1088 1258 139 59 130 chr6 56170627 56170951 -133108603 - Tigger1 DNA MER2_type 0 2418 2118 261 315 15 8 chr6 56170964 56171094 -133108460 + L1ME1 LINE L1 6030 6160 -6 1907 177 0 0 chr6 56171435 56171745 -133107809 + AluJb SINE Alu 1 310 -2 2302 100 3 0 chr6 56171817 56172118 -133107436 - AluSx SINE Alu -7 305 4 553 341 85 20 chr6 56172711 56173110 -133106444 + L1MEd LINE L1 350 774 -5345 793 220 17 0 chr6 56173303 56173476 -133106078 + L1 LINE L1 3989 4164 -1982 965 153 6 35 chr6 56173476 56173646 -133105908 + AluJo SINE Alu 1 165 -147 316 176 0 27 chr6 56173647 56173721 -133105833 + ERVL LTR ERVL 5372 5443 -321 899 296 55 12 chr6 56173796 56174285 -133105269 + L1M4 LINE L1 3811 4320 -1826 359 279 106 6 chr6 56174328 56174507 -133105047 + L1M4 LINE L1 4631 4827 -1319 187 321 38 0 chr6 56174507 56174560 -133104994 + L2 LINE L2 3192 3246 -67 2250 94 0 0 chr6 56176319 56176616 -133102938 - AluSg SINE Alu -13 297 1 27 0 0 0 chr6 56176623 56176650 -133102904 + AT_rich Low_complexity Low_complexity 1 27 0 280 217 0 0 chr6 56176701 56176747 -133102807 + MER81 DNA DNA 2 47 -67 464 268 63 14 chr6 56177270 56177412 -133102142 + MIR3 SINE MIR 33 181 -27 23 0 0 0 chr6 56177585 56177608 -133101946 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 56178248 56178269 -133101285 + AT_rich Low_complexity Low_complexity 1 21 0 2018 98 37 17 chr6 56178837 56179133 -133100421 + AluSx SINE Alu 1 302 -10 27 29 0 0 chr6 56179330 56179364 -133100190 + AT_rich Low_complexity Low_complexity 1 34 0 536 241 78 61 chr6 56179472 56179717 -133099837 - L2 LINE L2 -2 3311 3063 23 68 0 0 chr6 56179756 56179800 -133099754 + AT_rich Low_complexity Low_complexity 1 44 0 384 313 20 27 chr6 56180072 56180219 -133099335 - MIR3 SINE MIR -5 203 58 356 276 57 0 chr6 56180677 56180782 -133098772 - MER103 DNA DNA -2 164 54 219 197 0 127 chr6 56181048 56181119 -133098435 - L2 LINE L2 -7 3306 3245 408 246 9 0 chr6 56181521 56181631 -133097923 - L1MC4 LINE L1 -1 8041 7931 303 318 46 40 chr6 56181795 56181946 -133097608 - L3 LINE CR1 -182 1395 1244 936 205 19 5 chr6 56181997 56182207 -133097347 - L1MB7 LINE L1 -10 6174 5962 380 322 110 26 chr6 56182453 56182680 -133096874 - L3 LINE CR1 -929 648 403 189 426 96 0 chr6 56183862 56183998 -133095556 + L2 LINE L2 2905 3053 -219 421 298 206 16 chr6 56184110 56184358 -133095196 + MLT1H LTR MaLR 124 418 -131 515 283 187 5 chr6 56185257 56185444 -133094110 - MIR SINE MIR -10 252 32 642 241 0 0 chr6 56185588 56185721 -133093833 + FLAM_C SINE Alu 1 133 0 2343 81 7 7 chr6 56186950 56187258 -133092296 - AluSq SINE Alu -5 308 1 847 205 6 6 chr6 56188649 56188820 -133090734 - FRAM SINE Alu -5 171 1 23 101 0 0 chr6 56188833 56188912 -133090642 + AT_rich Low_complexity Low_complexity 1 79 0 683 260 25 83 chr6 56188961 56189323 -133090231 - MER58B DNA MER1_type 0 341 1 1968 120 27 7 chr6 56189643 56189942 -133089612 + AluSx SINE Alu 1 305 -7 26 64 0 0 chr6 56189972 56190019 -133089535 + AT_rich Low_complexity Low_complexity 1 47 0 1879 187 52 35 chr6 56190020 56190479 -133089075 + MLT1C LTR MaLR 1 467 0 556 252 15 0 chr6 56190770 56190901 -133088653 + Zaphod DNA AcHobo 391 523 -3508 308 254 16 0 chr6 56190906 56190969 -133088585 + Zaphod DNA AcHobo 3967 4030 -1 24 0 0 0 chr6 56192287 56192311 -133087243 + AT_rich Low_complexity Low_complexity 1 24 0 2090 135 0 0 chr6 56192316 56192620 -133086934 + AluSg SINE Alu 1 304 -6 654 288 39 5 chr6 56192668 56192873 -133086681 - MIR SINE MIR -37 225 14 827 220 82 13 chr6 56192887 56193192 -133086362 - L1M4 LINE L1 -2882 3264 2939 669 238 78 0 chr6 56193195 56193388 -133086166 - L1M4 LINE L1 -3618 2528 2321 302 328 52 22 chr6 56193480 56193507 -133086047 - L1MC4 LINE L1 -1310 6732 6707 2189 91 10 3 chr6 56193507 56193804 -133085750 + AluSc SINE Alu 1 299 -10 302 328 52 22 chr6 56193804 56193910 -133085644 - L1MC4 LINE L1 -1335 6707 6595 2256 108 0 0 chr6 56194100 56194396 -133085158 - AluSx SINE Alu -16 296 1 250 263 120 51 chr6 56194976 56195151 -133084403 + MER113 DNA MER1_type? 10 196 -325 2308 146 37 30 chr6 56195420 56195912 -133083642 - L1MB7 LINE L1 -9 6175 5681 183 42 0 0 chr6 56196095 56196119 -133083435 + (A)n Simple_repeat Simple_repeat 1 24 0 2435 78 3 0 chr6 56196122 56196428 -133083126 - AluSp SINE Alu -6 307 1 353 321 65 22 chr6 56196441 56196625 -133082929 + MIR3 SINE MIR 8 199 -9 1083 203 102 29 chr6 56197271 56197586 -133081968 - MER44D DNA MER2_type 0 609 2 404 292 130 6 chr6 56198238 56198399 -133081155 - MIR SINE MIR -70 192 12 361 244 51 39 chr6 56198934 56199090 -133080464 + L1MB7 LINE L1 44 201 -6341 509 178 0 0 chr6 56199322 56199412 -133080142 + MLT1A1 LTR MaLR 9 98 -276 2026 202 39 0 chr6 56199433 56199814 -133079740 - MSTD LTR MaLR 0 396 1 1733 163 80 3 chr6 56199814 56200152 -133079402 - MSTD-int LTR MaLR 0 1735 1372 2849 272 58 36 chr6 56200152 56201032 -133078522 - MSTD-int LTR MaLR -519 1216 318 750 258 55 14 chr6 56201052 56201269 -133078285 + MLT1A1 LTR MaLR 133 358 -7 1878 234 132 45 chr6 56201663 56203247 -133076307 + L1MB7 LINE L1 875 2721 -4104 * 3007 229 60 9 chr6 56203241 56204015 -133075539 + L1MB7 LINE L1 5605 6442 -240 219 36 0 0 chr6 56204015 56204043 -133075511 + (TG)n Simple_repeat Simple_repeat 1 28 0 3007 229 60 9 chr6 56204043 56204285 -133075269 + L1MB7 LINE L1 6442 6670 -12 23 33 0 0 chr6 56204543 56204573 -133074981 + AT_rich Low_complexity Low_complexity 1 30 0 1775 166 49 24 chr6 56204778 56206467 -133073087 + L1PB2 LINE L1 1 1646 -5221 2311 109 3 0 chr6 56206467 56206778 -133072776 + AluSx SINE Alu 1 312 0 1775 166 49 24 chr6 56206778 56207866 -133071688 + L1PB2 LINE L1 1646 2705 -4162 2354 98 3 0 chr6 56207866 56208173 -133071381 + AluSp SINE Alu 2 309 -4 1775 166 49 24 chr6 56208173 56211996 -133067558 + L1PB2 LINE L1 2705 6865 -2 684 306 15 23 chr6 56212384 56212645 -133066909 - MIR SINE MIR -3 259 1 440 304 61 0 chr6 56213630 56213778 -133065776 - MIR SINE MIR -31 231 75 274 61 0 0 chr6 56215282 56215315 -133064239 + U2 snRNA snRNA 1 33 -155 657 239 34 51 chr6 56215331 56215507 -133064047 + MER5B DNA MER1_type 1 173 -5 288 290 76 30 chr6 56215978 56216109 -133063445 + L2 LINE L2 2024 2160 -1154 2292 83 3 3 chr6 56216130 56216430 -133063124 - AluSg SINE Alu -10 300 1 2070 289 113 21 chr6 56217222 56217903 -133061651 + L2 LINE L2 1964 2581 -732 2025 128 3 3 chr6 56217903 56218201 -133061353 - AluSx SINE Alu -14 298 1 2070 289 113 21 chr6 56218201 56218766 -133060788 + L2 LINE L2 2581 3309 -4 1069 137 6 0 chr6 56218998 56219159 -133060395 + AluSx SINE Alu 1 162 -150 240 0 31 0 chr6 56219163 56219195 -133060359 - MER4E LTR ERV1 -726 40 8 2302 89 0 7 chr6 56219195 56219498 -133060056 + AluSx SINE Alu 1 301 -11 1642 188 131 32 chr6 56219833 56220329 -133059225 + LTR48 LTR ERV1 240 784 -3 1978 201 100 22 chr6 56220635 56221137 -133058417 - MER87 LTR ERV1 0 541 1 28 79 0 0 chr6 56221939 56222002 -133057552 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr6 56222155 56222176 -133057378 + AT_rich Low_complexity Low_complexity 1 21 0 507 152 29 38 chr6 56222789 56222894 -133056660 - MER5B DNA MER1_type 0 178 75 232 159 16 16 chr6 56222904 56222967 -133056587 + (TA)n Simple_repeat Simple_repeat 2 64 0 2283 80 3 0 chr6 56222967 56223255 -133056299 - AluSg SINE Alu -21 289 1 279 203 17 17 chr6 56223256 56223315 -133056239 + MER5B DNA MER1_type 116 174 -4 77 12 0 0 chr6 56223454 56223538 -133056016 + AT_rich Low_complexity Low_complexity 1 84 0 405 0 0 0 chr6 56223611 56223656 -133055898 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 315 49 0 0 chr6 56223667 56223708 -133055846 + (TA)n Simple_repeat Simple_repeat 2 42 0 593 110 0 0 chr6 56223708 56223790 -133055764 - AluSg/x SINE Alu -12 300 219 1087 249 93 0 chr6 56223979 56224236 -133055318 + MER69 DNA AcHobo 240 520 -2006 2129 123 105 10 chr6 56226281 56226670 -133052884 + MSTB LTR MaLR 1 426 0 186 43 0 0 chr6 56227630 56227653 -133051901 + (GAA)n Simple_repeat Simple_repeat 2 24 0 1398 202 35 14 chr6 56227655 56227942 -133051612 + AluJo SINE Alu 1 293 -19 255 328 62 11 chr6 56228915 56229092 -133050462 - MLT1L LTR MaLR 0 615 430 21 0 0 0 chr6 56229201 56229222 -133050332 + AT_rich Low_complexity Low_complexity 1 21 0 1104 215 19 0 chr6 56229320 56229525 -133050029 - MER82 DNA MER2_type -1 652 444 332 314 66 7 chr6 56229559 56229696 -133049858 + MIR SINE MIR 2 146 -116 403 277 0 0 chr6 56229778 56229872 -133049682 - MER82 DNA MER2_type -559 94 1 226 150 33 33 chr6 56230218 56230278 -133049276 + L1ME LINE L1 17 76 -6347 1976 265 63 27 chr6 56230344 56231319 -133048235 + L1ME LINE L1 780 1794 -4922 303 266 18 0 chr6 56231305 56231414 -133048140 + L1ME LINE L1 5984 6094 -847 * 1648 206 3 0 chr6 56231418 56231704 -133047850 + AluJb SINE Alu 1 287 -25 2256 81 17 3 chr6 56231714 56232010 -133047544 + AluY SINE Alu 1 300 -11 211 269 0 19 chr6 56232010 56232055 -133047499 + GA-rich Low_complexity Low_complexity 6 51 0 1512 185 22 39 chr6 56232060 56232423 -133047131 + L1ME LINE L1 6076 6432 -529 2245 117 3 0 chr6 56233208 56233517 -133046037 - AluSp SINE Alu -2 311 2 1038 160 30 0 chr6 56233671 56233840 -133045714 - MER46A DNA MER2_type 0 236 63 * 1191 100 0 0 chr6 56233836 56233996 -133045558 + MER4A LTR ERV1 505 664 0 228 247 216 31 chr6 56234536 56234633 -133044921 - MIR3 SINE MIR -11 197 83 22 103 0 0 chr6 56234731 56234809 -133044745 + AT_rich Low_complexity Low_complexity 1 78 0 2240 103 7 0 chr6 56237121 56237423 -133042131 - AluSg SINE Alu -6 304 1 2408 91 0 0 chr6 56237470 56237778 -133041776 - AluSc SINE Alu -1 308 1 2252 105 3 0 chr6 56238001 56238296 -133041258 - AluSg SINE Alu -14 296 1 268 279 0 0 chr6 56238780 56238848 -133040706 - MIR SINE MIR -21 241 174 774 182 0 0 chr6 56240304 56240436 -133039118 + FLAM_A SINE Alu 2 133 0 26 0 0 0 chr6 56240436 56240462 -133039092 + AT_rich Low_complexity Low_complexity 1 26 0 1308 167 142 39 chr6 56240635 56240965 -133038589 - THE1B LTR MaLR 0 364 1 17657 37 25 4 chr6 56241468 56247305 -133032249 + L1PA3 LINE L1 1 6166 0 2080 126 0 16 chr6 56247647 56247964 -133031590 - AluSx SINE Alu 0 312 1 290 44 89 0 chr6 56247973 56248018 -133031536 - L1MC1 LINE L1 0 6333 6285 2917 177 39 8 chr6 56248167 56248761 -133030793 + L1MB4 LINE L1 5427 6038 -142 1641 153 69 35 chr6 56248767 56249118 -133030436 - MSTB LTR MaLR 0 375 1 1387 164 90 32 chr6 56249136 56249599 -133029955 + L1MC2 LINE L1 5795 6339 -5 615 141 50 0 chr6 56249600 56249721 -133029833 + L1MB4 LINE L1 6052 6178 -2 633 263 78 80 chr6 56249964 56250363 -133029191 + L1MC2 LINE L1 60 457 -6083 1029 249 67 30 chr6 56250815 56251207 -133028347 + MER65B LTR ERV1 1 520 -11 1151 171 66 3 chr6 56251657 56251944 -133027610 + L1MC2 LINE L1 1088 1392 -5151 243 171 0 144 chr6 56251939 56252050 -133027504 + L1MC2 LINE L1 3902 3996 -2544 * 576 213 65 85 chr6 56252079 56252379 -133027175 + MER39 LTR ERV1 117 535 -172 557 199 46 30 chr6 56252390 56252521 -133027033 + FLAM_A SINE Alu 1 133 0 2087 136 0 0 chr6 56252535 56252830 -133026724 + AluSq SINE Alu 1 295 -18 380 203 54 40 chr6 56252847 56253016 -133026538 + MER34 LTR ERV1 370 702 -5 1078 184 33 108 chr6 56253020 56253256 -133026298 + L1MC2 LINE L1 3968 4159 -2381 4123 168 24 6 chr6 56253256 56253976 -133025578 + MER44D DNA MER2_type 1 605 0 1078 184 33 108 chr6 56253976 56254164 -133025390 + L1MC2 LINE L1 4159 4360 -2180 788 166 29 0 chr6 56254365 56254504 -133025050 - FLAM_C SINE Alu 0 143 1 21 0 0 0 chr6 56254528 56254549 -133025005 + AT_rich Low_complexity Low_complexity 1 21 0 408 237 107 0 chr6 56255479 56255610 -133023944 + MER103 DNA DNA 3 147 -19 4969 157 47 8 chr6 56256042 56257006 -133022548 + L1MC2 LINE L1 5580 6585 -153 379 126 149 0 chr6 56257008 56257095 -133022459 + L1MC2 LINE L1 6624 6723 -15 259 284 0 12 chr6 56258632 56258713 -133020841 - MER112 DNA MER1_type -171 89 10 1303 110 0 0 chr6 56258964 56259137 -133020417 + AluSq SINE Alu 129 301 -12 344 275 141 42 chr6 56261209 56261351 -133018203 + MIR SINE MIR 8 163 -99 486 256 273 11 chr6 56266026 56266202 -133013352 - MIR SINE MIR -21 241 20 24 0 0 0 chr6 56266947 56266971 -133012583 + AT_rich Low_complexity Low_complexity 1 24 0 496 362 58 62 chr6 56268747 56269247 -133010307 + L2 LINE L2 2412 2909 -405 2135 111 4 0 chr6 56269449 56269764 -133009790 + AluSx SINE Alu 3 318 0 2218 107 3 0 chr6 56271005 56271303 -133008251 + AluSx SINE Alu 9 307 -5 182 306 0 20 chr6 56271307 56271356 -133008198 - MIR SINE MIR -156 106 59 2529 281 104 50 chr6 56271565 56273041 -133006513 - L2 LINE L2 0 3313 1666 9662 134 24 54 chr6 56273050 56273928 -133005626 + Tigger1 DNA MER2_type 94 997 -1421 2065 139 3 3 chr6 56273928 56274231 -133005323 + AluSc SINE Alu 3 305 -4 9662 134 24 54 chr6 56274231 56275604 -133003950 + Tigger1 DNA MER2_type 997 2288 -130 3526 115 14 50 chr6 56275604 56276223 -133003331 + MER4A LTR ERV1 4 600 0 9662 134 24 54 chr6 56276223 56276351 -133003203 + Tigger1 DNA MER2_type 2288 2418 0 24 53 0 0 chr6 56276920 56276958 -133002596 + AT_rich Low_complexity Low_complexity 1 38 0 2150 118 0 0 chr6 56277050 56277346 -133002208 + AluSc SINE Alu 1 296 -13 1809 153 19 16 chr6 56277363 56277670 -133001884 + AluSg1 SINE Alu 1 308 -1 527 322 64 4 chr6 56277936 56277963 -133001591 - HAL1 LINE L1 -701 1806 1782 603 0 0 0 chr6 56277963 56278030 -133001524 + (TG)n Simple_repeat Simple_repeat 2 68 0 527 322 64 4 chr6 56278030 56278266 -133001288 - HAL1 LINE L1 -725 1782 1527 1467 209 20 10 chr6 56278914 56279211 -133000343 + AluJo SINE Alu 1 300 -12 251 186 0 17 chr6 56279241 56279300 -133000254 + (TA)n Simple_repeat Simple_repeat 1 58 0 204 216 0 0 chr6 56279334 56279385 -133000169 + (CATA)n Simple_repeat Simple_repeat 2 52 0 2685 193 30 19 chr6 56280138 56280671 -132998883 + MER44D DNA MER2_type 9 602 -3 372 250 0 75 chr6 56280733 56280824 -132998730 - MIR SINE MIR -12 250 169 1544 205 0 10 chr6 56280824 56281126 -132998428 - AluJo SINE Alu -11 301 3 372 250 0 75 chr6 56281126 56281154 -132998400 - MIR SINE MIR -93 169 140 3479 181 43 55 chr6 56281155 56281295 -132998259 - L1MB8 LINE L1 -2 6176 6036 2407 85 0 0 chr6 56281295 56281601 -132997953 + AluY SINE Alu 1 306 -5 3479 181 43 55 chr6 56281601 56281624 -132997930 - L1MB8 LINE L1 -142 6036 6014 1805 183 46 3 chr6 56281624 56281974 -132997580 - MLT1A1 LTR MaLR 0 365 1 3479 181 43 55 chr6 56281974 56282594 -132996960 - L1MB8 LINE L1 -164 6014 5401 474 220 17 17 chr6 56282634 56282752 -132996802 - MIR SINE MIR -111 151 34 320 243 63 18 chr6 56282834 56282945 -132996609 - MLT1L LTR MaLR -328 287 172 1089 143 174 39 chr6 56282961 56283201 -132996353 - MSTD LTR MaLR -6 390 70 3196 138 26 0 chr6 56283201 56283702 -132995852 + MER75 DNA T2_type 1 514 0 1089 143 174 39 chr6 56283702 56283783 -132995771 - MSTD LTR MaLR -326 70 1 4884 204 62 35 chr6 56284752 56286630 -132992924 + L1MD2 LINE L1 4424 6356 -3 23 33 0 0 chr6 56286807 56286837 -132992717 + AT_rich Low_complexity Low_complexity 1 30 0 41 48 0 0 chr6 56287208 56287270 -132992284 + AT_rich Low_complexity Low_complexity 1 62 0 1881 98 0 0 chr6 56287792 56288036 -132991518 + AluSg SINE Alu 58 301 -9 2267 123 0 0 chr6 56288235 56288544 -132991010 + AluSq SINE Alu 2 310 -3 21 36 0 0 chr6 56288748 56288776 -132990778 + AT_rich Low_complexity Low_complexity 1 28 0 329 227 52 31 chr6 56289285 56289382 -132990172 - MIR SINE MIR 0 262 164 189 121 0 0 chr6 56289557 56289590 -132989964 + (TG)n Simple_repeat Simple_repeat 2 34 0 1169 169 12 75 chr6 56289694 56289787 -132989767 + AluJo SINE Alu 37 134 -178 2025 93 57 0 chr6 56289787 56290066 -132989488 - AluSg SINE Alu -15 295 1 1169 169 12 75 chr6 56290066 56290227 -132989327 + AluJo SINE Alu 134 275 -37 185 81 0 27 chr6 56290237 56290274 -132989280 + (TA)n Simple_repeat Simple_repeat 2 37 0 507 175 155 0 chr6 56290277 56290380 -132989174 - FLAM_C SINE Alu -24 119 1 26 30 0 0 chr6 56290492 56290525 -132989029 + AT_rich Low_complexity Low_complexity 1 33 0 25 65 0 0 chr6 56291133 56291179 -132988375 + AT_rich Low_complexity Low_complexity 1 46 0 895 244 95 76 chr6 56291405 56291814 -132987740 + MLT2D LTR ERVL 5 421 -43 194 31 62 0 chr6 56291872 56291893 -132987661 + A-rich Low_complexity Low_complexity 1 26 -8 1835 152 32 0 chr6 56291893 56292176 -132987378 - AluSx SINE Alu -20 292 1 39 0 0 0 chr6 56292423 56292462 -132987092 + AT_rich Low_complexity Low_complexity 1 39 0 405 323 94 9 chr6 56292702 56292925 -132986629 - MIR SINE MIR 0 262 21 1839 178 35 31 chr6 56292927 56293381 -132986173 - L1MA4A LINE L1 0 6303 5848 9136 238 64 36 chr6 56293431 56293898 -132985656 - L1 LINE L1 -3466 3382 2930 225 0 0 0 chr6 56293898 56293923 -132985631 + (TA)n Simple_repeat Simple_repeat 1 25 0 2174 95 3 3 chr6 56293923 56294206 -132985348 - AluSc SINE Alu -26 283 1 9136 238 64 36 chr6 56294206 56297008 -132982546 - L1 LINE L1 -3917 2931 21 1946 126 0 0 chr6 56297518 56297796 -132981758 + AluSx SINE Alu 35 312 0 3246 129 16 4 chr6 56298965 56299470 -132980084 + MER9 LTR ERVK 1 511 0 4558 83 34 22 chr6 56299470 56300143 -132979411 + HERVK9 LTR ERVK 1 681 -5235 * 26340 118 25 27 chr6 56300128 56304429 -132975125 + HERVK9 LTR ERVK 1625 5916 0 3320 111 18 10 chr6 56304429 56304936 -132974618 + MER9 LTR ERVK 1 511 0 733 298 60 37 chr6 56305510 56306148 -132973406 + L1MEc LINE L1 287 909 -5306 2179 114 3 13 chr6 56306148 56306456 -132973098 + AluSx SINE Alu 1 305 -7 733 298 60 37 chr6 56306456 56307000 -132972554 + L1MEc LINE L1 909 3581 -2634 1869 126 28 11 chr6 56307127 56307412 -132972142 - AluJo SINE Alu -22 290 1 328 248 120 15 chr6 56307469 56307602 -132971952 - MER117 DNA MER1_type -49 148 2 4633 180 29 6 chr6 56308513 56309660 -132969894 - L1MB4 LINE L1 -8 6172 4998 1113 246 52 10 chr6 56309863 56310250 -132969304 + L1ME LINE L1 2777 3179 -2967 572 278 0 0 chr6 56310301 56310474 -132969080 + L1ME LINE L1 3297 3469 -2677 847 247 62 97 chr6 56310478 56310943 -132968611 + MER68 LTR ERV1 5 453 -109 2064 222 31 57 chr6 56310951 56311873 -132967681 + L1ME LINE L1 4633 5519 -647 2185 99 14 3 chr6 56311873 56312167 -132967387 + AluSc SINE Alu 1 297 -12 2064 222 31 57 chr6 56312167 56312293 -132967261 + L1ME LINE L1 5519 5647 -519 1611 255 106 94 chr6 56312661 56314065 -132965489 + HAL1 LINE L1 77 1502 -1005 1621 146 82 21 chr6 56314065 56314346 -132965208 - AluJo SINE Alu -14 298 1 1611 255 106 94 chr6 56314346 56314433 -132965121 + HAL1 LINE L1 1502 1586 -921 342 0 0 0 chr6 56314632 56314670 -132964884 + (CA)n Simple_repeat Simple_repeat 1 38 0 236 258 183 11 chr6 56315397 56315490 -132964064 - MIR SINE MIR -70 192 84 217 245 0 0 chr6 56315948 56315997 -132963557 - L2 LINE L2 0 3272 3224 21 0 0 0 chr6 56316448 56316469 -132963085 + AT_rich Low_complexity Low_complexity 1 21 0 6659 60 12 0 chr6 56316477 56317906 -132961648 - L1PA7 LINE L1 -45 6109 4671 28 0 0 0 chr6 56317940 56317968 -132961586 + AT_rich Low_complexity Low_complexity 1 28 0 40 21 0 0 chr6 56318035 56318082 -132961472 + AT_rich Low_complexity Low_complexity 1 47 0 574 156 0 0 chr6 56318456 56318552 -132961002 - FLAM_A SINE Alu -4 138 43 22957 42 0 3 chr6 56318660 56321548 -132958006 - L1P LINE L1 -1219 4927 2049 180 0 0 0 chr6 56322804 56322824 -132956730 + (A)n Simple_repeat Simple_repeat 1 20 0 1285 226 4 11 chr6 56323353 56323623 -132955931 + AluJo SINE Alu 1 268 -44 4640 220 45 49 chr6 56323730 56325632 -132953922 + L1M2 LINE L1 1342 3231 -3617 1064 189 46 0 chr6 56325629 56325912 -132953642 + L1MA5 LINE L1 5845 6300 0 * 871 194 58 92 chr6 56325926 56325983 -132953571 + L1MDa LINE L1 2241 2298 -4242 2069 125 0 0 chr6 56325983 56326290 -132953264 + AluSg SINE Alu 1 307 0 871 194 58 92 chr6 56326290 56326398 -132953156 + L1MDa LINE L1 2298 2408 -4132 2006 159 7 0 chr6 56326398 56326706 -132952848 + AluSx SINE Alu 1 310 -2 871 194 58 92 chr6 56326706 56326920 -132952634 + L1MDa LINE L1 2408 2609 -3931 3959 232 82 63 chr6 56326930 56327236 -132952318 + L1MDa LINE L1 2663 2962 -3578 2301 88 0 14 chr6 56327236 56327530 -132952024 + AluSp SINE Alu 1 290 -23 3959 232 82 63 chr6 56327530 56328548 -132951006 + L1MDa LINE L1 2962 4040 -2500 2309 107 0 7 chr6 56328548 56328858 -132950696 + AluSg SINE Alu 2 309 -1 3959 232 82 63 chr6 56328858 56329483 -132950071 + L1MDa LINE L1 4040 4651 -1889 403 39 0 0 chr6 56329509 56329561 -132949993 + L1PA6 LINE L1 5034 5085 -1061 4823 55 20 0 chr6 56329561 56330165 -132949389 + L1PA6 LINE L1 5532 6147 -7 269 224 123 29 chr6 56330187 56330357 -132949197 + L1MDa LINE L1 4686 4871 -1669 201 241 0 19 chr6 56330719 56330773 -132948781 + CT-rich Low_complexity Low_complexity 5 57 0 12974 48 0 1 chr6 56330836 56332479 -132947075 + L1P LINE L1 1006 2647 -3499 473 82 0 0 chr6 56382479 56382540 -132897014 - Alu SINE Alu -248 62 2 1613 176 22 41 chr6 56382627 56382945 -132896609 + AluJb SINE Alu 1 312 0 30 0 0 0 chr6 56383090 56383120 -132896434 + AT_rich Low_complexity Low_complexity 1 30 0 209 275 99 0 chr6 56384215 56384306 -132895248 - L2 LINE L2 0 3272 3173 2520 61 0 0 chr6 56384366 56384661 -132894893 - AluY SINE Alu -16 295 1 867 278 130 20 chr6 56384930 56385384 -132894170 + L2 LINE L2 1712 2215 -1099 1432 242 78 32 chr6 56385464 56385939 -132893615 + L2 LINE L2 2816 3312 -1 180 80 0 0 chr6 56386080 56386105 -132893449 + L2 LINE L2 3229 3253 -19 575 240 34 29 chr6 56386882 56387057 -132892497 - MIR SINE MIR -17 245 70 251 198 0 123 chr6 56387252 56387295 -132892259 + MER3 DNA MER1_type 16 48 -161 348 252 150 7 chr6 56387295 56387442 -132892112 - MER3 DNA MER1_type -1 208 41 293 341 0 0 chr6 56387643 56387734 -132891820 - MIR SINE MIR -124 138 48 2383 97 0 0 chr6 56387821 56388121 -132891433 - AluSx SINE Alu -12 300 1 652 159 12 38 chr6 56388977 56389242 -132890312 + GA-rich Low_complexity Low_complexity 1 258 0 24 32 0 0 chr6 56389521 56389552 -132890002 + GC_rich Low_complexity Low_complexity 1 31 0 281 257 71 57 chr6 56391960 56392100 -132887454 + LTR65 LTR ERV1 4 145 -524 520 336 76 10 chr6 56392104 56392393 -132887161 + MER90 LTR ERV1 301 608 -6 231 36 0 0 chr6 56393260 56393288 -132886266 + (TCC)n Simple_repeat Simple_repeat 1 28 0 194 340 199 0 chr6 56395052 56395208 -132884346 + MIR SINE MIR 76 262 0 815 275 91 32 chr6 56395266 56395641 -132883913 + MLT1L LTR MaLR 211 607 -8 552 305 5 11 chr6 56395681 56395868 -132883686 + L2 LINE L2 3115 3300 -13 207 69 0 0 chr6 56395868 56395897 -132883657 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 272 303 135 13 chr6 56396740 56396890 -132882664 + MIR SINE MIR 5 172 -36 271 233 209 35 chr6 56397169 56397341 -132882213 + MIR SINE MIR 43 244 -18 1915 172 61 29 chr6 56399199 56399577 -132879977 + MLT1B LTR MaLR 1 390 0 2105 125 7 3 chr6 56399993 56400282 -132879272 + AluSx SINE Alu 1 290 -22 1912 142 20 3 chr6 56400392 56400695 -132878859 - Tigger3(Golem) DNA MER2_type -1 3028 2721 335 241 51 13 chr6 56400693 56400772 -132878782 - Tigger3(Golem) DNA MER2_type -2947 82 1 * 1596 299 54 34 chr6 56401577 56401944 -132877610 + MLT2F LTR ERVL 1 388 -275 1421 233 96 6 chr6 56401944 56402279 -132877275 + MLT1A1 LTR MaLR 1 365 0 1596 299 54 34 chr6 56402279 56402561 -132876993 + MLT2F LTR ERVL 388 663 0 336 271 74 60 chr6 56403156 56403378 -132876176 + LTR33A LTR ERVL 1 211 -312 774 259 86 9 chr6 56403407 56403639 -132875915 + LTR33A LTR ERVL 274 523 0 239 226 97 0 chr6 56404553 56404615 -132874939 + L2 LINE L2 3205 3272 0 362 265 32 10 chr6 56406588 56406707 -132872847 + MIR SINE MIR 2 125 -83 207 315 0 0 chr6 56406922 56406976 -132872578 + GA-rich Low_complexity Low_complexity 2 55 0 403 306 82 0 chr6 56407159 56407306 -132872248 + MIR SINE MIR 53 211 -51 625 52 0 0 chr6 56407623 56407700 -132871854 - MADE1 DNA Mariner -3 77 1 2275 105 3 0 chr6 56407799 56408103 -132871451 + AluSx SINE Alu 1 305 -7 589 214 196 7 chr6 56408398 56408723 -132870831 + L2 LINE L2 2771 3159 -154 250 196 0 0 chr6 56408936 56408987 -132870567 + L2 LINE L2 3263 3313 0 416 323 37 6 chr6 56409260 56409424 -132870130 + MIR SINE MIR 48 216 -46 252 231 197 90 chr6 56409554 56409636 -132869918 - MER112 DNA MER1_type 0 260 188 2278 92 3 13 chr6 56409636 56409939 -132869615 + AluSc SINE Alu 1 300 -9 252 231 197 90 chr6 56409939 56410090 -132869464 - MER112 DNA MER1_type -72 188 2 3554 163 54 35 chr6 56410175 56410824 -132868730 - MER21B LTR ERV1 -22 841 181 728 200 62 0 chr6 56410959 56411104 -132868450 - MER21B LTR ERV1 -709 154 1 307 204 202 7 chr6 56411152 56411304 -132868250 - MIR SINE MIR -64 198 15 1400 225 63 39 chr6 56412303 56412796 -132866758 + MLT1D LTR MaLR 1 505 0 404 295 127 0 chr6 56413040 56413206 -132866348 + MIR SINE MIR 20 206 -56 294 270 22 0 chr6 56414640 56414729 -132864825 - MIR3 SINE MIR -8 200 110 256 250 74 65 chr6 56414889 56414997 -132864557 + L2 LINE L2 3156 3264 -8 212 293 88 27 chr6 56415145 56415292 -132864262 + L3 LINE CR1 1411 1566 -11 1596 145 173 7 chr6 56416090 56416379 -132863175 - MER1B DNA MER1_type 0 337 1 1771 183 100 12 chr6 56416666 56417066 -132862488 + MER63B DNA MER1_type 2 436 0 963 92 70 7 chr6 56417146 56417288 -132862266 - BC200 scRNA scRNA -48 152 2 1308 180 28 28 chr6 56417484 56417740 -132861814 + MER33 DNA MER1_type 3 261 -2324 2007 146 23 0 chr6 56417740 56418042 -132861512 + AluJo SINE Alu 1 309 -3 1308 180 28 28 chr6 56418042 56418107 -132861447 + MER33 DNA MER1_type 260 324 0 3710 200 29 39 chr6 56418531 56419885 -132859669 + L1ME1 LINE L1 4824 6161 -5 411 308 159 6 chr6 56420963 56421145 -132858409 - L3 LINE CR1 -1 1576 1367 574 199 6 70 chr6 56421145 56421301 -132858253 + L1MC4a LINE L1 5801 5946 -1862 1078 234 16 4 chr6 56421428 56421676 -132857878 - MIR SINE MIR -11 251 1 304 179 0 21 chr6 56421736 56421831 -132857723 + (TTGG)n Simple_repeat Simple_repeat 4 96 0 189 238 254 0 chr6 56421855 56421918 -132857636 - L2 LINE L2 -605 2709 2631 671 311 100 24 chr6 56422023 56422492 -132857062 - L3 LINE CR1 -370 1207 703 256 261 106 4 chr6 56422473 56422620 -132856934 - MIR SINE MIR -63 145 26 * 306 226 0 0 chr6 56425366 56425472 -132854082 + GA-rich Low_complexity Low_complexity 2 107 0 514 293 161 15 chr6 56425516 56425919 -132853635 - L1M4 LINE L1 -2660 3486 3025 264 267 167 0 chr6 56426084 56426174 -132853380 - MIR SINE MIR -67 141 37 195 211 0 0 chr6 56426256 56426294 -132853260 + MIR SINE MIR 111 148 -114 2425 79 3 9 chr6 56426305 56426620 -132852934 + AluSp SINE Alu 1 313 0 1524 217 67 36 chr6 56427103 56427195 -132852359 - L1M4 LINE L1 -2630 4327 4239 2019 119 10 26 chr6 56427195 56427505 -132852049 + AluSq SINE Alu 3 307 -6 1524 217 67 36 chr6 56427505 56427918 -132851636 - L1M4 LINE L1 -2718 4239 3806 488 223 50 8 chr6 56427937 56428058 -132851496 + L1M4 LINE L1 24 149 -6393 * 2496 222 46 14 chr6 56428053 56428149 -132851405 - L1ME LINE L1 -1498 5459 5368 2770 101 3 14 chr6 56428149 56428517 -132851037 + THE1B LTR MaLR 1 364 0 2496 222 46 14 chr6 56428517 56429050 -132850504 - L1ME LINE L1 -1589 5368 4810 3688 165 14 3 chr6 56429050 56429693 -132849861 + L1MB7 LINE L1 5534 6183 -1 3098 253 56 30 chr6 56429696 56432133 -132847421 - L1ME LINE L1 -3143 3814 1193 272 294 103 49 chr6 56432157 56432361 -132847193 - L1ME LINE L1 -5808 1047 833 557 226 68 50 chr6 56432548 56432793 -132846761 - L1ME LINE L1 -5968 979 11 312 231 106 0 chr6 56432799 56432903 -132846651 - MIR SINE MIR -62 200 86 247 280 211 34 chr6 56433137 56433312 -132846242 - MIR SINE MIR -34 228 23 258 333 109 14 chr6 56433357 56433567 -132845987 + L3b LINE CR1 1102 1331 -252 393 198 57 9 chr6 56435877 56435983 -132843571 + MIR SINE MIR 96 206 -56 248 229 0 0 chr6 56437223 56437284 -132842270 - Charlie2a DNA MER1_type -69 2793 2733 923 181 44 0 chr6 56437312 56437494 -132842060 - Charlie2a DNA MER1_type -1203 1659 1470 205 194 0 0 chr6 56437534 56437570 -132841984 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 2252 99 0 3 chr6 56437669 56437963 -132841591 - AluSg SINE Alu -17 293 1 903 281 30 10 chr6 56437965 56438264 -132841290 - Charlie2a DNA MER1_type -2557 305 1 495 305 48 23 chr6 56439402 56439625 -132839929 + MIR SINE MIR 30 262 0 286 185 27 158 chr6 56439774 56439920 -132839634 + L2 LINE L2 3183 3309 -4 180 97 0 0 chr6 56440162 56440193 -132839361 + (A)n Simple_repeat Simple_repeat 1 31 0 1584 186 103 10 chr6 56442933 56443245 -132836309 + MER58B DNA MER1_type 1 341 0 28 0 0 0 chr6 56443664 56443692 -132835862 + AT_rich Low_complexity Low_complexity 1 28 0 227 233 0 50 chr6 56443705 56443765 -132835789 - L2 LINE L2 -15 3298 3242 214 294 0 0 chr6 56445103 56445171 -132834383 + MER5A DNA MER1_type 43 110 -79 342 104 169 52 chr6 56446271 56446348 -132833206 + MIR SINE MIR 98 183 -79 278 350 51 25 chr6 56446898 56447095 -132832459 + MIR SINE MIR 5 206 -56 1324 241 78 20 chr6 56447107 56447502 -132832052 - MER113 DNA MER1_type? -103 418 1 356 316 26 0 chr6 56448150 56448264 -132831290 - MIR3 SINE MIR -7 201 85 25 31 0 0 chr6 56448367 56448399 -132831155 + AT_rich Low_complexity Low_complexity 1 32 0 190 313 208 14 chr6 56448811 56448955 -132830599 - MIR SINE MIR 0 262 91 226 286 169 19 chr6 56448970 56449124 -132830430 + L1MEd LINE L1 2 178 -5941 228 111 0 0 chr6 56449326 56449362 -132830192 + (A)n Simple_repeat Simple_repeat 1 36 0 688 288 101 37 chr6 56449561 56450471 -132829083 + L1MEd LINE L1 718 1731 -4579 225 94 0 0 chr6 56450848 56450880 -132828674 + L1PBa LINE L1 2866 2897 -3966 21 0 0 0 chr6 56451177 56451198 -132828356 + AT_rich Low_complexity Low_complexity 1 21 0 1801 158 0 101 chr6 56451219 56451604 -132827950 - MER7A DNA MER2_type -2 344 1 354 169 0 0 chr6 56451606 56451671 -132827883 + (TATG)n Simple_repeat Simple_repeat 2 66 0 1349 176 152 4 chr6 56451765 56452021 -132827533 + AluJo SINE Alu 4 297 -15 519 217 107 21 chr6 56452820 56453006 -132826548 + MIR SINE MIR 48 246 -16 21 0 0 0 chr6 56453007 56453028 -132826526 + AT_rich Low_complexity Low_complexity 1 21 0 188 237 0 17 chr6 56453424 56453483 -132826071 + GA-rich Low_complexity Low_complexity 1 58 0 489 224 72 8 chr6 56454594 56454719 -132824835 + MER94 DNA DNA 2 134 0 290 274 137 12 chr6 56454772 56454940 -132824614 - MIR SINE MIR -72 190 2 240 252 114 23 chr6 56455398 56455529 -132824025 - MIR SINE MIR -72 190 48 240 310 39 39 chr6 56456632 56456787 -132822767 - MIR3 SINE MIR -15 193 39 656 216 72 72 chr6 56457904 56458085 -132821469 - MER63A DNA MER1_type -21 189 9 1916 97 4 11 chr6 56458104 56458373 -132821181 + AluSg SINE Alu 44 310 0 231 36 0 0 chr6 56459489 56459517 -132820037 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 350 240 72 32 chr6 56459557 56459682 -132819872 + L1MC4 LINE L1 7601 7730 -312 44 70 0 0 chr6 56459695 56459781 -132819773 + AT_rich Low_complexity Low_complexity 1 86 0 468 146 0 0 chr6 56459811 56459914 -132819640 + (TA)n Simple_repeat Simple_repeat 2 104 0 321 253 132 16 chr6 56459917 56460099 -132819455 + L1MC4 LINE L1 7840 8042 0 1554 179 0 53 chr6 56460122 56460424 -132819130 + AluJo SINE Alu 1 286 -26 410 241 44 32 chr6 56460488 56460646 -132818908 + L2 LINE L2 2749 2908 -406 534 311 86 23 chr6 56460732 56460989 -132818565 + L2 LINE L2 2912 3184 -129 252 0 0 0 chr6 56461053 56461081 -132818473 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 2167 123 0 3 chr6 56461202 56461503 -132818051 + AluSx SINE Alu 1 300 -12 330 356 0 0 chr6 56461580 56461681 -132817873 + MIR SINE MIR 38 138 -124 351 252 150 7 chr6 56461882 56462029 -132817525 + MER3 DNA MER1_type 41 208 -1 250 198 0 123 chr6 56462029 56462072 -132817482 - MER3 DNA MER1_type -161 48 16 632 260 35 25 chr6 56462242 56462442 -132817112 + MIR SINE MIR 44 245 -17 2245 215 98 11 chr6 56463219 56463758 -132815796 + MLT1G LTR MaLR 1 586 -4 182 80 0 0 chr6 56463777 56463802 -132815752 - MIR SINE MIR -150 58 34 1623 168 45 0 chr6 56464002 56464270 -132815284 + AluJo SINE Alu 1 280 -32 23 54 0 0 chr6 56464301 56464338 -132815216 + AT_rich Low_complexity Low_complexity 1 37 0 212 296 114 51 chr6 56464758 56464934 -132814620 - MIR SINE MIR -10 252 66 1388 246 131 30 chr6 56465703 56466207 -132813347 + MLT1H1 LTR MaLR 1 555 0 1240 136 0 0 chr6 56467672 56467849 -132811705 + L1MB5 LINE L1 5992 6168 -6 957 57 57 0 chr6 56470442 56470601 -132808953 + CT-rich Low_complexity Low_complexity 4 171 0 274 287 159 80 chr6 56470708 56470837 -132808717 + L2 LINE L2 2998 3115 -157 2459 93 3 0 chr6 56470837 56471148 -132808406 - AluSx SINE Alu 0 312 1 274 287 159 80 chr6 56471148 56471269 -132808285 + L2 LINE L2 3115 3268 -4 2583 96 48 22 chr6 56471582 56471937 -132807617 + THE1B LTR MaLR 1 364 0 220 323 85 39 chr6 56472549 56472679 -132806875 + MIR3 SINE MIR 9 144 -64 345 268 57 51 chr6 56472790 56472947 -132806607 - MIR3 SINE MIR -9 199 42 211 217 22 0 chr6 56473449 56473495 -132806059 + GA-rich Low_complexity Low_complexity 2 48 0 214 266 0 53 chr6 56474310 56474404 -132805150 - MIR SINE MIR 0 262 174 578 250 164 21 chr6 56474436 56474637 -132804917 + MIR SINE MIR 5 232 -30 712 158 29 0 chr6 56477871 56478350 -132801204 + (CA)n Simple_repeat Simple_repeat 1 493 0 1202 142 28 57 chr6 56479781 56479993 -132799561 + MER20 DNA MER1_type 2 207 -12 229 310 86 17 chr6 56479993 56480109 -132799445 - MIR3 SINE MIR -50 158 35 22 0 0 0 chr6 56480147 56480169 -132799385 + AT_rich Low_complexity Low_complexity 1 22 0 210 118 0 0 chr6 56482153 56482187 -132797367 + (A)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr6 56483950 56483971 -132795583 + AT_rich Low_complexity Low_complexity 1 21 0 273 29 0 0 chr6 56486837 56486871 -132792683 + (CAGCC)n Simple_repeat Simple_repeat 1 34 0 422 96 151 0 chr6 56486943 56487016 -132792538 + MIR3 SINE MIR 122 205 -3 207 319 14 0 chr6 56493094 56493166 -132786388 + GA-rich Low_complexity Low_complexity 2 74 0 2597 62 0 0 chr6 56496541 56496849 -132782705 - AluY SINE Alu -3 308 1 2585 71 23 20 chr6 56496911 56497265 -132782289 - L1PA13 LINE L1 -2 6161 5807 235 320 137 6 chr6 56497735 56497910 -132781644 - MIR SINE MIR -45 217 20 2443 86 0 0 chr6 56497980 56498284 -132781270 + AluSx SINE Alu 3 306 -6 216 0 0 0 chr6 56499013 56499037 -132780517 + (CA)n Simple_repeat Simple_repeat 2 25 0 180 0 0 0 chr6 56499247 56499267 -132780287 + (A)n Simple_repeat Simple_repeat 1 20 0 405 321 30 6 chr6 56499672 56499840 -132779714 + MIR3 SINE MIR 30 201 -7 216 0 0 0 chr6 56499985 56500009 -132779545 + (A)n Simple_repeat Simple_repeat 1 24 0 2306 96 0 0 chr6 56500407 56500700 -132778854 - AluSc SINE Alu -16 293 1 358 346 33 28 chr6 56500996 56501207 -132778347 + MIR SINE MIR 1 212 -50 352 131 16 0 chr6 56502887 56502948 -132776606 + AluSp/q SINE Alu 240 301 -2 203 295 13 26 chr6 56503555 56503633 -132775921 - L2 LINE L2 -58 3255 3179 225 336 96 0 chr6 56503931 56504056 -132775498 + L2 LINE L2 3167 3303 -10 501 289 232 51 chr6 56504115 56504568 -132774986 + L3 LINE CR1 716 1250 -327 352 282 87 0 chr6 56505048 56505151 -132774403 - L2 LINE L2 -5 3308 3197 2058 120 17 0 chr6 56505198 56505489 -132774065 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr6 56505862 56505885 -132773669 + AT_rich Low_complexity Low_complexity 1 23 0 2005 118 3 14 chr6 56506082 56506371 -132773183 + AluSq SINE Alu 1 286 -27 423 0 0 0 chr6 56506376 56506423 -132773131 + (CA)n Simple_repeat Simple_repeat 2 48 0 2938 144 40 29 chr6 56506443 56506991 -132772563 + L1MC2 LINE L1 5784 6337 -7 194 315 93 46 chr6 56507205 56507313 -132772241 - MIR3 SINE MIR -83 125 13 25 31 0 0 chr6 56508439 56508471 -132771083 + AT_rich Low_complexity Low_complexity 1 32 0 1789 163 21 7 chr6 56508738 56509027 -132770527 + AluJo SINE Alu 1 293 -19 222 165 47 129 chr6 56510506 56510591 -132768963 - MIR SINE MIR 0 262 185 562 269 83 2 chr6 56510761 56510971 -132768583 - MIR SINE MIR 0 262 30 251 250 0 0 chr6 56512770 56512826 -132766728 + GA-rich Low_complexity Low_complexity 2 57 0 21 0 0 0 chr6 56514083 56514104 -132765450 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 56515145 56515176 -132764378 + AT_rich Low_complexity Low_complexity 1 31 0 460 258 107 79 chr6 56515195 56515447 -132764107 + MIR SINE MIR 1 259 -3 22 35 0 0 chr6 56515447 56515476 -132764078 + AT_rich Low_complexity Low_complexity 1 29 0 391 252 46 83 chr6 56516483 56516642 -132762912 + MIR SINE MIR 4 151 -62 436 296 130 22 chr6 56516652 56516875 -132762679 + MIR SINE MIR 3 249 -13 411 216 101 65 chr6 56517016 56517155 -132762399 + MIR SINE MIR 63 206 -56 26 0 0 0 chr6 56517167 56517193 -132762361 + AT_rich Low_complexity Low_complexity 1 26 0 222 170 85 0 chr6 56517274 56517321 -132762233 + L2 LINE L2 3258 3308 -5 22 0 0 0 chr6 56517342 56517364 -132762190 + AT_rich Low_complexity Low_complexity 1 22 0 2363 96 3 0 chr6 56517686 56517998 -132761556 + AluSp SINE Alu 1 313 0 551 243 119 11 chr6 56518143 56518320 -132761234 + MIR SINE MIR 57 252 -10 1588 143 50 50 chr6 56519259 56519559 -132759995 + AluJb SINE Alu 2 301 -11 22 56 0 0 chr6 56519571 56519607 -132759947 + AT_rich Low_complexity Low_complexity 1 36 0 241 189 19 0 chr6 56521514 56521567 -132757987 + (CATA)n Simple_repeat Simple_repeat 1 54 0 370 318 88 0 chr6 56521740 56521888 -132757666 + MIR3 SINE MIR 42 202 -6 358 293 40 137 chr6 56522845 56523196 -132756358 - L2 LINE L2 0 3272 2956 375 391 19 19 chr6 56523247 56523459 -132756095 - L2 LINE L2 -421 2893 2682 332 253 101 20 chr6 56523728 56523827 -132755727 + MER5A DNA MER1_type 78 184 -5 447 198 165 16 chr6 56524105 56524226 -132755328 - L3 LINE CR1 -192 1385 1247 201 236 123 75 chr6 56524286 56524392 -132755162 - L3 LINE CR1 -556 1021 911 858 279 193 26 chr6 56524480 56525130 -132754424 + L3 LINE CR1 383 1195 -382 192 291 103 46 chr6 56525449 56525624 -132753930 + L2 LINE L2 1180 1364 -1950 183 156 0 0 chr6 56526267 56526299 -132753255 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 199 246 82 33 chr6 56527875 56527936 -132751618 + MIR SINE MIR 79 142 -66 611 234 141 44 chr6 56528065 56528292 -132751262 + MIR SINE MIR 12 260 -2 502 355 24 47 chr6 56528414 56528710 -132750844 - L2 LINE L2 -43 3229 2941 25 0 0 0 chr6 56528722 56528747 -132750807 + AT_rich Low_complexity Low_complexity 1 25 0 603 297 137 37 chr6 56529137 56529518 -132750036 + L2 LINE L2 2399 2817 -497 606 291 82 34 chr6 56529572 56529840 -132749714 + L2 LINE L2 3032 3312 -1 211 290 16 0 chr6 56531785 56531847 -132747707 + MIR SINE MIR 60 122 -86 23 0 0 0 chr6 56532292 56532315 -132747239 + AT_rich Low_complexity Low_complexity 1 23 0 183 184 0 0 chr6 56532339 56532377 -132747177 + (TA)n Simple_repeat Simple_repeat 2 39 0 246 32 0 0 chr6 56532385 56532416 -132747138 + (CA)n Simple_repeat Simple_repeat 2 32 0 786 214 11 16 chr6 56532486 56532673 -132746881 - L1PB4 LINE L1 -1 6155 5970 27 29 0 0 chr6 56532901 56532935 -132746619 + AT_rich Low_complexity Low_complexity 1 34 0 210 37 0 0 chr6 56534501 56534528 -132745026 + (A)n Simple_repeat Simple_repeat 1 27 0 319 347 48 60 chr6 56535325 56535573 -132743981 + L3b LINE CR1 1114 1358 -225 182 340 0 0 chr6 56535982 56536035 -132743519 - MIR SINE MIR -68 140 88 198 118 0 0 chr6 56536424 56536458 -132743096 + (CA)n Simple_repeat Simple_repeat 1 34 0 669 227 17 35 chr6 56537443 56537615 -132741939 + MER5B DNA MER1_type 10 178 0 * 1289 300 25 25 chr6 56537615 56538080 -132741474 + L2 LINE L2 2177 2641 -673 814 289 103 15 chr6 56538089 56538428 -132741126 + L2 LINE L2 2945 3313 0 454 225 69 104 chr6 56538716 56538889 -132740665 - MIR3 SINE MIR -23 185 19 22 35 0 0 chr6 56539663 56539692 -132739862 + AT_rich Low_complexity Low_complexity 1 29 0 320 291 47 71 chr6 56539755 56539882 -132739672 - L2 LINE L2 -11 3261 3138 25 75 0 0 chr6 56540168 56540221 -132739333 + AT_rich Low_complexity Low_complexity 1 53 0 319 326 0 0 chr6 56540434 56540520 -132739034 - L1MC4 LINE L1 -1339 6703 6618 2251 98 6 19 chr6 56540645 56540962 -132738592 + AluSp SINE Alu 1 313 0 353 316 127 39 chr6 56542115 56542433 -132737121 + L2 LINE L2 2717 3055 -217 206 336 147 9 chr6 56542608 56542724 -132736830 + L2 LINE L2 3141 3272 0 277 308 63 28 chr6 56544207 56544350 -132735204 - MIR3 SINE MIR -1 207 60 254 82 41 0 chr6 56544981 56545030 -132734524 + (CAGAGA)n Simple_repeat Simple_repeat 3 53 0 983 90 22 0 chr6 56547075 56547241 -132732313 + AluSg/x SINE Alu 148 316 0 213 206 361 21 chr6 56547281 56547378 -132732176 + MIR SINE MIR 19 148 -60 249 119 0 0 chr6 56547442 56547484 -132732070 + (CA)n Simple_repeat Simple_repeat 1 42 0 353 244 45 114 chr6 56547575 56547751 -132731803 + MIR SINE MIR 35 198 -64 667 328 88 53 chr6 56547968 56548935 -132730619 - L2 LINE L2 -204 3068 2066 1277 108 0 0 chr6 56550968 56551134 -132728420 - AluSg/x SINE Alu -9 303 138 282 234 65 39 chr6 56551191 56551268 -132728286 + L2 LINE L2 3194 3272 0 297 0 0 0 chr6 56551706 56551739 -132727815 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 158 0 0 chr6 56552729 56552767 -132726787 + (CA)n Simple_repeat Simple_repeat 2 39 0 2393 59 23 3 chr6 56554375 56554678 -132724876 + AluY SINE Alu 1 309 -2 354 255 38 125 chr6 56556799 56556983 -132722571 - L2 LINE L2 0 3313 3146 2362 242 46 17 chr6 56557196 56557951 -132721603 + MER20B DNA MER1_type 1 777 -6 2216 118 0 10 chr6 56558531 56558864 -132720690 + AluSx SINE Alu 1 312 0 306 324 112 27 chr6 56558865 56559195 -132720359 - L2 LINE L2 -1244 2070 1713 350 325 66 0 chr6 56559602 56559753 -132719801 + MIR SINE MIR 20 180 -82 2344 85 10 7 chr6 56559776 56560081 -132719473 - AluSq SINE Alu -7 306 1 224 250 54 0 chr6 56562472 56562528 -132717026 + L2 LINE L2 3249 3307 -6 2351 72 7 23 chr6 56563874 56564178 -132715376 + AluSp SINE Alu 1 299 -14 260 306 61 0 chr6 56565302 56565400 -132714154 + MIR SINE MIR 79 182 -80 205 254 18 0 chr6 56565653 56565708 -132713846 + GA-rich Low_complexity Low_complexity 2 57 0 251 311 34 7 chr6 56565966 56566114 -132713440 + L1ME4a LINE L1 5936 6087 -34 2202 119 0 0 chr6 56568024 56568318 -132711236 - AluSx SINE Alu -18 294 1 2556 95 11 27 chr6 56568399 56568769 -132710785 + THE1B LTR MaLR 1 364 0 668 283 126 32 chr6 56569144 56569693 -132709861 + L2 LINE L2 2540 3204 -109 749 225 98 49 chr6 56569693 56569937 -132709617 - MIR SINE MIR -2 260 5 668 283 126 32 chr6 56569937 56570022 -132709532 + L2 LINE L2 3204 3280 -33 1986 133 24 0 chr6 56570651 56570944 -132708610 - AluJb SINE Alu -12 300 1 290 317 79 30 chr6 56571016 56571180 -132708374 - MIR3 SINE MIR -6 202 31 2187 102 0 3 chr6 56571542 56571826 -132707728 - AluSc SINE Alu -26 283 1 2251 105 3 7 chr6 56572694 56572999 -132706555 - AluSc SINE Alu 0 309 6 1333 111 0 0 chr6 56573110 56573282 -132706272 - AluSq SINE Alu -141 172 1 273 109 0 0 chr6 56573413 56573459 -132706095 + (CATA)n Simple_repeat Simple_repeat 3 48 0 22 0 0 0 chr6 56573779 56573801 -132705753 + AT_rich Low_complexity Low_complexity 1 22 0 195 100 0 0 chr6 56575430 56575460 -132704094 + (TG)n Simple_repeat Simple_repeat 2 31 0 1021 268 97 0 chr6 56576323 56576644 -132702910 - L3b LINE CR1 -121 1462 1111 739 264 113 52 chr6 56577354 56577718 -132701836 + L2 LINE L2 2928 3313 0 316 298 112 28 chr6 56578614 56578792 -132700762 + MIR SINE MIR 70 262 0 332 320 62 14 chr6 56578844 56578990 -132700564 - MIR SINE MIR -65 143 30 24 0 0 0 chr6 56581588 56581612 -132697942 + AT_rich Low_complexity Low_complexity 1 24 0 2231 89 0 4 chr6 56582790 56583092 -132696462 + AluSg SINE Alu 1 301 0 1749 123 4 0 chr6 56583964 56584200 -132695354 + AluSx SINE Alu 1 237 -75 21 36 0 0 chr6 56584222 56584250 -132695304 + AT_rich Low_complexity Low_complexity 1 28 0 831 230 87 124 chr6 56584617 56584767 -132694787 + MLT1H1 LTR MaLR 29 183 -372 1946 161 0 13 chr6 56584767 56585077 -132694477 + AluJo SINE Alu 5 310 -2 831 230 87 124 chr6 56585077 56585473 -132694081 + MLT1H1 LTR MaLR 183 553 -2 847 287 18 9 chr6 56586553 56586776 -132692778 - MIR SINE MIR 0 262 38 885 220 67 34 chr6 56587123 56587187 -132692367 + MER58A DNA MER1_type 1 61 -2359 1965 124 103 9 chr6 56587187 56587517 -132692037 + MER46B DNA MER2_type 1 236 0 885 220 67 34 chr6 56587517 56587661 -132691893 + MER58A DNA MER1_type 61 216 -8 411 119 0 0 chr6 56588395 56588462 -132691092 + (CA)n Simple_repeat Simple_repeat 2 68 0 416 365 77 1 chr6 56591631 56591827 -132687727 - MIR SINE MIR -53 209 2 22 35 0 0 chr6 56591862 56591891 -132687663 + AT_rich Low_complexity Low_complexity 1 29 0 2292 112 0 0 chr6 56592456 56592759 -132686795 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr6 56594317 56594339 -132685215 + AT_rich Low_complexity Low_complexity 1 22 0 321 226 24 121 chr6 56597908 56598005 -132681549 + L2 LINE L2 3160 3244 -28 2478 77 0 0 chr6 56598005 56598302 -132681252 - AluSx SINE Alu -15 297 1 321 226 24 121 chr6 56598302 56598328 -132681226 + L2 LINE L2 3244 3271 -1 22 80 0 0 chr6 56600700 56600750 -132678804 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr6 56601965 56601987 -132677567 + AT_rich Low_complexity Low_complexity 1 22 0 212 282 0 59 chr6 56602088 56602173 -132677381 + L2 LINE L2 3224 3303 -10 222 37 0 0 chr6 56602203 56602230 -132677324 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr6 56602725 56602753 -132676801 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 56605113 56605143 -132674411 + GC_rich Low_complexity Low_complexity 1 30 0 608 160 0 8 chr6 56605311 56605436 -132674118 + (CTG)n Simple_repeat Simple_repeat 3 126 0 219 340 0 20 chr6 56605566 56605666 -132673888 + G-rich Low_complexity Low_complexity 2 99 0 306 270 54 118 chr6 56605681 56606089 -132673465 - L1M2 LINE L1 -5933 916 535 1527 220 72 0 chr6 56610170 56610488 -132669066 + MER58B DNA MER1_type 1 341 0 2303 209 127 60 chr6 56612237 56612956 -132666598 + LTR41 LTR ERVL 1 767 -6 270 0 0 0 chr6 56613329 56613359 -132666195 + (A)n Simple_repeat Simple_repeat 1 30 0 340 235 31 62 chr6 56613499 56613661 -132665893 + MER103 DNA DNA 4 160 -6 579 183 27 70 chr6 56614055 56614241 -132665313 - MER96B DNA MER1_type? -238 179 2 23 33 0 0 chr6 56614304 56614334 -132665220 + AT_rich Low_complexity Low_complexity 1 30 0 2207 109 26 3 chr6 56614384 56614687 -132664867 + AluSg SINE Alu 1 310 0 2133 118 0 19 chr6 56615064 56615379 -132664175 + AluSx SINE Alu 2 310 -2 1793 152 19 44 chr6 56615733 56616048 -132663506 - AluJo SINE Alu -5 307 1 186 413 0 0 chr6 56617210 56617290 -132662264 + L2 LINE L2 2271 2350 -964 242 304 14 0 chr6 56617565 56617634 -132661920 + L2 LINE L2 3203 3272 0 558 350 38 35 chr6 56617649 56617989 -132661565 + L2 LINE L2 2437 2777 -537 513 299 51 7 chr6 56618442 56618638 -132660916 + L1MC/D LINE L1 5483 5685 -507 657 225 189 20 chr6 56619636 56619880 -132659674 + Charlie2 DNA MER1_type 3 287 -2575 523 95 0 0 chr6 56619884 56619958 -132659596 + Alu SINE Alu 234 307 -2 1095 207 44 61 chr6 56620000 56620314 -132659240 + Charlie2 DNA MER1_type 2226 2531 -331 1779 153 0 26 chr6 56620314 56620621 -132658933 + AluJo SINE Alu 1 299 -13 1095 207 44 61 chr6 56620621 56620765 -132658789 + Charlie2 DNA MER1_type 2531 2676 -186 527 141 13 0 chr6 56620773 56620851 -132658703 + AluS SINE Alu 9 87 -225 825 148 82 0 chr6 56620851 56620986 -132658568 + AluSc SINE Alu 140 285 -24 1704 113 42 4 chr6 56621433 56621672 -132657882 + AluSx SINE Alu 26 273 -39 678 257 40 10 chr6 56622054 56622256 -132657298 - MIR SINE MIR -6 256 49 660 246 6 84 chr6 56622261 56622315 -132657239 + MER63A DNA MER1_type 57 114 -1574 2339 86 7 0 chr6 56622315 56622607 -132656947 - AluSq SINE Alu -19 294 1 660 246 6 84 chr6 56622607 56622719 -132656835 + MER63A DNA MER1_type 114 210 0 191 296 61 51 chr6 56623155 56623253 -132656301 + L3b LINE CR1 1484 1582 -1 624 241 50 117 chr6 56623752 56623826 -132655728 + L2 LINE L2 2931 3008 -305 2287 123 0 0 chr6 56623826 56624136 -132655418 - AluSx SINE Alu -2 310 1 624 241 50 117 chr6 56624136 56624463 -132655091 + L2 LINE L2 3008 3305 -8 2525 72 3 0 chr6 56624581 56624888 -132654666 + AluSp SINE Alu 1 308 -5 1753 162 0 21 chr6 56625239 56625529 -132654025 - AluJo SINE Alu -28 284 1 440 294 40 65 chr6 56626498 56626699 -132652855 - MIR SINE MIR -62 200 5 304 292 51 51 chr6 56627045 56627182 -132652372 - L1MC4 LINE L1 -1 8041 7905 1176 124 0 4 chr6 56627876 56628151 -132651403 + (TTCC)n Simple_repeat Simple_repeat 1 274 0 741 167 0 18 chr6 56628253 56628421 -132651133 + CT-rich Low_complexity Low_complexity 3 167 0 348 294 17 8 chr6 56628423 56628466 -132651088 + GA-rich Low_complexity Low_complexity 4 45 -78 2514 74 0 0 chr6 56628466 56628764 -132650790 + AluSg SINE Alu 11 308 -2 348 294 17 8 chr6 56628764 56628839 -132650715 + GA-rich Low_complexity Low_complexity 45 123 0 508 234 143 11 chr6 56629194 56629369 -132650185 + MIR SINE MIR 63 260 -2 562 313 130 13 chr6 56629783 56630013 -132649541 - MIR SINE MIR -1 261 5 3050 170 31 107 chr6 56630401 56630706 -132648848 + L1MB8 LINE L1 5326 5653 -525 2296 73 0 20 chr6 56630706 56631006 -132648548 + AluY SINE Alu 2 295 -16 3050 170 31 107 chr6 56631006 56631412 -132648142 + L1MB8 LINE L1 5653 5956 -222 1594 180 0 0 chr6 56631412 56631662 -132647892 + AluJo SINE Alu 5 254 -58 3050 170 31 107 chr6 56631662 56631856 -132647698 + L1MB8 LINE L1 5956 6163 -15 27 0 0 0 chr6 56631861 56631888 -132647666 + AT_rich Low_complexity Low_complexity 1 27 0 1909 125 14 28 chr6 56632153 56632440 -132647114 + AluSx SINE Alu 6 288 -24 3995 175 58 172 chr6 56632824 56633716 -132645838 + L1MCa LINE L1 20 1013 -5413 2089 166 40 33 chr6 56633716 56633906 -132645648 + MSTB LTR MaLR 1 188 -238 1802 92 78 28 chr6 56633906 56634190 -132645364 + AluSg SINE Alu 1 298 -12 2089 166 40 33 chr6 56634190 56634386 -132645168 + MSTB LTR MaLR 188 393 -33 2206 98 7 0 chr6 56634386 56634682 -132644872 + AluY SINE Alu 1 298 -13 2089 166 40 33 chr6 56634682 56634715 -132644839 + MSTB LTR MaLR 393 424 -2 3995 175 58 172 chr6 56634715 56635419 -132644135 + L1MCa LINE L1 1013 1433 -4993 1712 177 30 16 chr6 56635586 56635891 -132643663 - AluJo SINE Alu -3 309 1 25 31 0 0 chr6 56635891 56635923 -132643631 + AT_rich Low_complexity Low_complexity 1 32 0 1979 108 88 23 chr6 56636225 56636577 -132642977 + THE1C LTR MaLR 1 375 0 2294 173 54 2 chr6 56636578 56636983 -132642571 - MSTB LTR MaLR 0 426 1 211 403 0 14 chr6 56637014 56637086 -132642468 + L2 LINE L2 3121 3191 -81 2023 127 17 0 chr6 56638094 56638385 -132641169 - AluSx SINE Alu -16 296 1 311 278 41 0 chr6 56638749 56638846 -132640708 + MARNA DNA Mariner 363 463 -123 637 205 139 6 chr6 56639537 56639703 -132639851 - MER5A DNA MER1_type -1 188 1 217 293 207 29 chr6 56640178 56640386 -132639168 + L2 LINE L2 1830 2074 -1240 187 243 103 47 chr6 56640450 56640557 -132638997 - L2 LINE L2 -995 2319 2207 355 339 170 34 chr6 56640727 56641396 -132638158 + L2 LINE L2 2217 2976 -338 275 188 203 0 chr6 56641478 56641547 -132638007 - MIR SINE MIR -8 254 172 2397 81 3 0 chr6 56641750 56642045 -132637509 + AluSp SINE Alu 4 299 -14 1802 157 11 0 chr6 56642222 56642496 -132637058 - AluSx SINE Alu -35 277 1 294 295 74 74 chr6 56642922 56643071 -132636483 + L2 LINE L2 3122 3270 -2 1523 186 61 10 chr6 56643111 56643407 -132636147 + AluJo SINE Alu 1 311 -1 23 78 0 0 chr6 56643468 56643519 -132636035 + AT_rich Low_complexity Low_complexity 1 51 0 1848 161 4 0 chr6 56643529 56643809 -132635745 + AluSx SINE Alu 1 281 -31 213 65 0 0 chr6 56643812 56643843 -132635711 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 256 300 225 6 chr6 56643874 56644034 -132635520 - MIR SINE MIR 0 262 68 1815 147 11 18 chr6 56644676 56644961 -132634593 - AluSx SINE Alu -29 283 1 1671 269 103 27 chr6 56645033 56645932 -132633622 + L2 LINE L2 2347 3304 -9 1876 161 0 10 chr6 56646385 56646690 -132632864 + AluJo SINE Alu 1 302 -10 386 290 37 0 chr6 56646780 56646887 -132632667 - MIR3 SINE MIR -7 201 91 2364 89 0 0 chr6 56647239 56647541 -132632013 + AluSg SINE Alu 1 302 -8 2340 67 7 3 chr6 56648232 56648529 -132631025 - AluSc SINE Alu -11 298 1 525 219 123 7 chr6 56650816 56650971 -132628583 + MIR SINE MIR 84 256 -6 342 169 0 0 chr6 56651198 56651263 -132628291 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 283 316 84 42 chr6 56651287 56651502 -132628052 + L3 LINE CR1 1248 1471 -106 866 161 14 60 chr6 56651527 56651744 -132627810 + MER3 DNA MER1_type 3 209 0 776 196 13 19 chr6 56652406 56652564 -132626990 + FRAM SINE Alu 1 157 -9 350 226 29 66 chr6 56652687 56652824 -132626730 - MER94 DNA DNA -2 132 1 2221 108 0 0 chr6 56652901 56653189 -132626365 - AluSq SINE Alu -25 288 1 460 325 19 13 chr6 56653618 56653775 -132625779 + MIR SINE MIR 48 205 -57 278 282 35 86 chr6 56653865 56654073 -132625481 + MIR SINE MIR 9 206 -56 2204 87 3 7 chr6 56654261 56654549 -132625005 + AluSx SINE Alu 1 287 -25 1417 158 37 57 chr6 56654870 56655007 -132624547 + AluJo SINE Alu 1 139 -173 2018 111 39 0 chr6 56655007 56655287 -132624267 + AluSx SINE Alu 1 291 -21 1417 158 37 57 chr6 56655287 56655447 -132624107 + AluJo SINE Alu 139 292 -20 621 248 164 7 chr6 56655771 56655992 -132623562 - MIR SINE MIR -1 261 5 609 236 7 14 chr6 56656106 56656246 -132623308 + MIR3 SINE MIR 16 154 -54 252 261 232 56 chr6 56656600 56656742 -132622812 + MIR SINE MIR 44 210 -52 1802 240 73 15 chr6 56657642 56658176 -132621378 + L2 LINE L2 2291 2855 -459 391 257 170 18 chr6 56658282 56658453 -132621101 + L2 LINE L2 3117 3313 0 23 54 0 0 chr6 56658685 56658722 -132620832 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr6 56659071 56659111 -132620443 + AT_rich Low_complexity Low_complexity 1 40 0 22 88 0 0 chr6 56659257 56659314 -132620240 + AT_rich Low_complexity Low_complexity 1 57 0 180 297 117 45 chr6 56661294 56661405 -132618149 - L2 LINE L2 -785 2529 2411 1082 212 65 13 chr6 56661625 56661856 -132617698 - MIR SINE MIR -1 261 19 683 171 75 80 chr6 56663862 56663986 -132615568 - Charlie1 DNA MER1_type 0 2761 2637 1576 117 0 0 chr6 56663986 56664192 -132615362 - AluSg/x SINE Alu -17 293 88 683 171 75 80 chr6 56664192 56664306 -132615248 - Charlie1 DNA MER1_type -124 2637 2524 280 230 67 89 chr6 56664627 56664762 -132614792 - L1MC5 LINE L1 -81 7880 7749 866 245 57 0 chr6 56664829 56665041 -132614513 + MER58A DNA MER1_type 1 224 0 25 0 0 0 chr6 56665078 56665103 -132614451 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr6 56665117 56665144 -132614410 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr6 56665159 56665182 -132614372 + AT_rich Low_complexity Low_complexity 1 23 0 228 35 0 0 chr6 56666034 56666063 -132613491 + (TTG)n Simple_repeat Simple_repeat 1 29 0 1941 121 0 11 chr6 56666066 56666346 -132613208 - AluSx SINE Alu -35 277 1 31 68 0 0 chr6 56666903 56666962 -132612592 + AT_rich Low_complexity Low_complexity 1 59 0 647 188 26 0 chr6 56667005 56667122 -132612432 - FLAM_A SINE Alu -13 120 1 269 286 0 0 chr6 56667347 56667410 -132612144 + L2 LINE L2 2327 2389 -925 722 256 48 12 chr6 56667752 56668002 -132611552 - MIR SINE MIR -1 261 3 1240 157 25 5 chr6 56668154 56668352 -132611202 - AluJb SINE Alu -110 202 1 25 31 0 0 chr6 56668934 56668966 -132610588 + AT_rich Low_complexity Low_complexity 1 32 0 604 229 202 9 chr6 56669223 56669441 -132610113 + MER46C DNA MER2_type 79 338 0 326 302 0 0 chr6 56669441 56669527 -132610027 + MIR SINE MIR 156 241 -21 547 274 120 0 chr6 56669693 56669868 -132609686 + MER3 DNA MER1_type 14 209 0 1465 163 51 34 chr6 56670488 56670783 -132608771 + AluJo SINE Alu 3 302 -10 2399 68 0 3 chr6 56670809 56671103 -132608451 + AluY SINE Alu 3 295 -16 2220 103 0 23 chr6 56671409 56671719 -132607835 + AluSx SINE Alu 1 303 -9 29 28 0 0 chr6 56671793 56671829 -132607725 + AT_rich Low_complexity Low_complexity 1 36 0 189 0 0 0 chr6 56672820 56672841 -132606713 + (TTAAA)n Simple_repeat Simple_repeat 5 25 0 1594 180 47 0 chr6 56672852 56673130 -132606424 + AluJb SINE Alu 1 291 -21 445 147 0 0 chr6 56673321 56673396 -132606158 - AluJ/FLAM SINE Alu -237 75 1 270 116 0 0 chr6 56673460 56673503 -132606051 + (TG)n Simple_repeat Simple_repeat 2 44 0 286 274 107 55 chr6 56674446 56674847 -132604707 - L1M4 LINE L1 -1112 5034 4613 1581 120 120 57 chr6 56676947 56677264 -132602290 - MER1B DNA MER1_type 0 337 1 205 237 68 17 chr6 56677740 56677799 -132601755 - MER5C DNA MER1_type -250 74 13 543 223 33 16 chr6 56677833 56677954 -132601600 - L2 LINE L2 -1 3312 3190 847 259 5 5 chr6 56678491 56678680 -132600874 - MER5A DNA MER1_type 0 189 1 239 200 80 0 chr6 56679100 56679150 -132600404 - L2 LINE L2 0 3272 3219 188 345 18 0 chr6 56679242 56679297 -132600257 - L2 LINE L2 -225 3047 2992 2113 120 0 26 chr6 56679421 56679729 -132599825 - AluSx SINE Alu -12 300 1 436 280 28 0 chr6 56679814 56679921 -132599633 - MIR SINE MIR -150 112 3 238 246 33 0 chr6 56680053 56680114 -132599440 + (CATA)n Simple_repeat Simple_repeat 2 64 0 211 228 0 139 chr6 56681221 56681249 -132598305 - L2 LINE L2 0 3313 3283 2091 123 17 7 chr6 56681249 56681550 -132598004 + AluSx SINE Alu 1 304 -8 211 228 0 139 chr6 56681550 56681600 -132597954 - L2 LINE L2 -30 3283 3246 204 289 154 51 chr6 56682071 56682227 -132597327 - L2 LINE L2 -230 3042 2871 197 328 0 16 chr6 56682549 56682610 -132596944 - L2 LINE L2 -848 2466 2407 218 231 0 90 chr6 56682940 56683018 -132596536 - MIR SINE MIR -33 229 159 433 324 95 35 chr6 56684188 56684472 -132595082 + L3 LINE CR1 214 514 -1063 867 70 61 0 chr6 56684772 56684886 -132594668 - AluSc SINE Alu -188 121 1 369 206 0 0 chr6 56684886 56684954 -132594600 - MER5A DNA MER1_type -113 76 9 343 271 181 19 chr6 56685021 56685176 -132594378 - MIR SINE MIR -34 228 49 2217 101 3 0 chr6 56685555 56685843 -132593711 + AluSc SINE Alu 1 289 -20 1908 146 4 4 chr6 56687490 56687771 -132591783 + AluJb SINE Alu 1 281 -31 705 244 109 10 chr6 56688051 56688244 -132591310 + MIR SINE MIR 36 247 -15 36 53 0 0 chr6 56688335 56688392 -132591162 + AT_rich Low_complexity Low_complexity 1 57 0 198 250 0 0 chr6 56688839 56688883 -132590671 - MER5B DNA MER1_type -134 44 1 556 212 220 0 chr6 56689185 56689317 -132590237 - MER96 DNA MER1_type? 0 175 15 21 0 0 0 chr6 56689332 56689353 -132590201 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 56690680 56690710 -132588844 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 56691520 56691541 -132588013 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr6 56693644 56693664 -132585890 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr6 56695746 56695767 -132583787 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 56696497 56696524 -132583030 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr6 56696986 56697009 -132582545 + (CA)n Simple_repeat Simple_repeat 1 23 0 183 80 0 0 chr6 56699934 56699959 -132579595 + (TC)n Simple_repeat Simple_repeat 1 25 0 201 74 0 0 chr6 56702449 56702476 -132577078 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 999 124 0 0 chr6 56703433 56703578 -132575976 + AluSp/q SINE Alu 166 310 -3 502 252 170 6 chr6 56703679 56703838 -132575716 - MER5A DNA MER1_type -1 188 4 316 213 185 37 chr6 56704032 56704140 -132575414 - L2 LINE L2 -1 3271 3148 293 221 12 47 chr6 56704240 56704326 -132575228 + MIR SINE MIR 69 151 -111 315 269 42 36 chr6 56704798 56704965 -132574589 - L1ME4a LINE L1 -75 6046 5879 352 284 30 8 chr6 56705028 56705182 -132574372 - L1ME4a LINE L1 -344 5777 5611 248 290 62 11 chr6 56705425 56705601 -132573953 - LTR33A LTR ERVL -11 512 328 1385 212 51 25 chr6 56706339 56706693 -132572861 - MLT1A1 LTR MaLR -1 364 2 701 241 73 52 chr6 56706757 56706989 -132572565 - MIR SINE MIR -14 248 12 26 30 0 0 chr6 56707532 56707565 -132571989 + AT_rich Low_complexity Low_complexity 1 33 0 40914 34 21 1 chr6 56707572 56713598 -132565956 - L1PA2 LINE L1 -3 6152 2 353 258 82 44 chr6 56714493 56714652 -132564902 - MIR3 SINE MIR -28 180 16 410 248 161 7 chr6 56714872 56714908 -132564646 + MER58C DNA MER1_type 44 73 -2347 2412 75 0 23 chr6 56714908 56715213 -132564341 - AluY SINE Alu -13 298 1 410 248 161 7 chr6 56715213 56715325 -132564229 + MER58C DNA MER1_type 73 215 0 2270 101 0 0 chr6 56716846 56717134 -132562420 + AluSg SINE Alu 20 307 -3 246 258 194 0 chr6 56717588 56717681 -132561873 - MIR3 SINE MIR -9 199 89 4090 156 36 44 chr6 56718318 56718460 -132561094 + L1MB3 LINE L1 5182 5324 -859 2289 105 0 13 chr6 56718460 56718764 -132560790 + AluY SINE Alu 1 300 -11 4090 156 36 44 chr6 56718764 56719064 -132560490 + L1MB3 LINE L1 5324 5625 -558 564 101 0 0 chr6 56719064 56719143 -132560411 - MADE1 DNA Mariner -1 79 1 4090 156 36 44 chr6 56719143 56719713 -132559841 + L1MB3 LINE L1 5625 6181 -2 23 0 0 0 chr6 56719810 56719833 -132559721 + AT_rich Low_complexity Low_complexity 1 23 0 585 293 179 19 chr6 56719987 56720362 -132559192 + MLT1H LTR MaLR 12 446 -103 699 269 156 27 chr6 56720530 56720935 -132558619 + MLT1J LTR MaLR 11 467 -44 2073 130 7 0 chr6 56720979 56721280 -132558274 - AluSp SINE Alu -10 303 1 241 284 37 16 chr6 56721505 56721596 -132557958 - MIR SINE MIR -58 150 61 532 245 141 12 chr6 56721992 56722155 -132557399 + MER91A DNA MER1_type 13 196 0 597 265 153 23 chr6 56722379 56722594 -132556960 - MIR SINE MIR 0 262 20 472 306 98 20 chr6 56722684 56722981 -132556573 + MLT1J2 LTR MaLR 67 386 -64 500 357 12 6 chr6 56723085 56723253 -132556301 - MIR SINE MIR -75 187 19 356 299 45 19 chr6 56723807 56723964 -132555590 - MIR SINE MIR -59 203 43 397 256 12 0 chr6 56724637 56724723 -132554831 - L2 LINE L2 0 3272 3186 929 302 13 13 chr6 56726521 56726898 -132552656 + L1ME1 LINE L1 5784 6160 -6 501 258 104 53 chr6 56726924 56727340 -132552214 + L1ME4a LINE L1 5607 6053 -68 1409 199 41 24 chr6 56727340 56727631 -132551923 - AluJo SINE Alu -14 298 3 501 258 104 53 chr6 56727631 56727703 -132551851 + L1ME4a LINE L1 6053 6120 -1 1277 73 0 6 chr6 56727752 56727931 -132551623 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 267 31 0 0 chr6 56727931 56727963 -132551591 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 186 235 39 0 chr6 56728867 56728918 -132550636 + MIR SINE MIR 92 144 -118 401 321 101 18 chr6 56729481 56729649 -132549905 - L2 LINE L2 0 3272 3091 490 263 38 31 chr6 56729882 56730042 -132549512 - L2 LINE L2 0 3313 3153 3219 185 60 21 chr6 56730046 56730978 -132548576 - Charlie1 DNA MER1_type 0 2761 1761 1267 93 0 65 chr6 56730978 56731063 -132548491 + L1PB1 LINE L1 5950 6039 -112 2268 76 3 16 chr6 56731063 56731366 -132548188 + AluY SINE Alu 1 299 -12 1267 93 0 65 chr6 56731366 56731495 -132548059 + L1PB1 LINE L1 6039 6150 -1 550 229 131 37 chr6 56731508 56731836 -132547718 + L1MEd LINE L1 833 1191 -4928 187 43 0 0 chr6 56731987 56732010 -132547544 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1403 109 5 55 chr6 56732010 56732230 -132547324 - AluSx SINE Alu -28 284 76 7487 36 5 0 chr6 56732243 56733194 -132546360 - L1PA4 LINE L1 -3 6152 5198 11070 26 2 0 chr6 56733196 56734487 -132545067 + L1PA4 LINE L1 3896 5189 -957 671 121 0 0 chr6 56734487 56734578 -132544976 - AluSx SINE Alu -220 92 2 350 294 73 7 chr6 56734620 56734756 -132544798 + MIR SINE MIR 47 191 -71 587 199 110 7 chr6 56734780 56734916 -132544638 - Charlie1 DNA MER1_type -985 1776 1627 871 282 39 10 chr6 56735054 56735477 -132544077 - L2 LINE L2 -170 3143 2713 264 220 0 110 chr6 56735638 56735729 -132543825 - MLT1J2 LTR MaLR -9 441 361 200 277 116 80 chr6 56736150 56736262 -132543292 + MER5A DNA MER1_type 20 135 -54 2117 131 7 0 chr6 56736597 56736902 -132542652 + AluSx SINE Alu 1 307 -5 181 259 56 77 chr6 56738116 56738193 -132541361 + MER5A DNA MER1_type 44 118 -71 3147 174 168 29 chr6 56738193 56738918 -132540636 + LTR1B LTR ERV1 1 826 0 181 259 56 77 chr6 56738918 56738983 -132540571 + MER5A DNA MER1_type 118 183 -6 536 310 92 34 chr6 56739062 56739527 -132540027 + L1ME4a LINE L1 5577 6068 -53 221 211 19 0 chr6 56739545 56739597 -132539957 + (TA)n Simple_repeat Simple_repeat 1 53 0 2369 92 3 0 chr6 56740174 56740467 -132539087 + AluSp SINE Alu 1 294 -19 691 191 124 22 chr6 56740865 56741043 -132538511 - MER3 DNA MER1_type 0 209 14 347 191 181 0 chr6 56741216 56741310 -132538244 - L2 LINE L2 0 3313 3203 214 273 30 30 chr6 56741687 56741753 -132537801 + MIR SINE MIR 59 124 -138 421 324 4 71 chr6 56742253 56742478 -132537076 + MIR SINE MIR 3 212 -50 564 221 87 7 chr6 56742495 56742644 -132536910 - MLT1J1 LTR MaLR 0 446 286 561 303 100 8 chr6 56742690 56742931 -132536623 - MLT1J2 LTR MaLR -124 326 64 308 125 0 0 chr6 56743177 56743225 -132536329 - L1PA5 LINE L1 0 6154 6107 253 305 14 92 chr6 56743298 56743439 -132536115 - L2 LINE L2 -1 3312 3183 286 311 0 48 chr6 56744129 56744288 -132535266 - MIR SINE MIR -65 143 21 888 238 114 28 chr6 56745756 56746298 -132533256 - L2 LINE L2 -19 3294 2692 463 266 131 65 chr6 56746606 56747237 -132532317 - L2 LINE L2 -12 3301 2613 2296 95 3 7 chr6 56747691 56747996 -132531558 + AluSq SINE Alu 1 304 -9 698 243 27 38 chr6 56749435 56749620 -132529934 + MIR SINE MIR 19 201 -61 1879 163 7 3 chr6 56750211 56750517 -132529037 - AluSx SINE Alu -5 307 1 634 278 42 66 chr6 56751290 56751349 -132528205 - MIR SINE MIR -1 261 202 2305 103 0 0 chr6 56751349 56751641 -132527913 - AluSx SINE Alu -20 292 1 634 278 42 66 chr6 56751641 56751822 -132527732 - MIR SINE MIR -60 202 27 269 279 39 10 chr6 56753387 56753491 -132526063 - MIR SINE MIR -83 125 19 1208 163 10 0 chr6 56753815 56754017 -132525537 + MER3 DNA MER1_type 6 209 0 237 341 87 7 chr6 56754133 56754271 -132525283 + MIR3 SINE MIR 2 150 -58 228 374 34 14 chr6 56755220 56755367 -132524187 - MIR SINE MIR -66 196 47 243 228 20 69 chr6 56755616 56755717 -132523837 - MIR SINE MIR -70 192 97 180 308 0 0 chr6 56756245 56756297 -132523257 - MIR SINE MIR -6 256 205 238 343 0 0 chr6 56757928 56758033 -132521521 - MIR SINE MIR -39 223 119 234 169 34 51 chr6 56758437 56758496 -132521058 - MARNA DNA Mariner -206 380 323 421 325 84 11 chr6 56758550 56758741 -132520813 - MARNA DNA Mariner -358 228 24 1316 280 56 75 chr6 56758861 56759201 -132520353 + L2 LINE L2 2393 2738 -575 1796 171 29 108 chr6 56759201 56759746 -132519808 + MLT1D LTR MaLR 2 503 -2 1316 280 56 75 chr6 56759746 56760213 -132519341 + L2 LINE L2 2738 3185 -128 2077 125 10 7 chr6 56760213 56760510 -132519044 + AluSx SINE Alu 1 298 -14 1316 280 56 75 chr6 56760510 56760636 -132518918 + L2 LINE L2 3185 3312 -1 258 258 91 23 chr6 56760893 56761025 -132518529 + MIR3 SINE MIR 45 185 -23 756 253 112 36 chr6 56761457 56761529 -132518025 + L1ME3A LINE L1 5566 5631 -539 1613 161 23 72 chr6 56761529 56761703 -132517851 + MLT1A2 LTR MaLR 1 182 -192 2256 115 0 3 chr6 56761703 56762007 -132517547 + AluSg SINE Alu 1 303 -7 1613 161 23 72 chr6 56762007 56762222 -132517332 + MLT1A2 LTR MaLR 182 371 -3 756 253 112 36 chr6 56762222 56762342 -132517212 + L1ME3A LINE L1 5631 5740 -430 218 95 24 0 chr6 56762342 56762384 -132517170 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 756 253 112 36 chr6 56762384 56762467 -132517087 + L1ME3A LINE L1 5740 5863 -307 183 323 50 20 chr6 56762850 56762949 -132516605 + MIR SINE MIR 19 120 -142 349 227 118 9 chr6 56763474 56763584 -132515970 + L1M4 LINE L1 2785 2906 -3240 2442 100 0 0 chr6 56763622 56763932 -132515622 + AluSg SINE Alu 1 310 0 2224 102 3 7 chr6 56765173 56765467 -132514087 + AluSx SINE Alu 1 293 -19 394 317 49 6 chr6 56767550 56767714 -132511840 - MIR SINE MIR -72 190 20 216 305 105 0 chr6 56768671 56768766 -132510788 - L2 LINE L2 -11 3261 3157 557 269 104 0 chr6 56769042 56769224 -132510330 - MIR SINE MIR -44 218 18 197 304 49 29 chr6 56769495 56769597 -132509957 - MIR SINE MIR -68 140 37 358 324 93 0 chr6 56770156 56770295 -132509259 + MIR SINE MIR 1 152 -110 249 313 12 0 chr6 56770397 56770480 -132509074 + (CAT)n Simple_repeat Simple_repeat 3 86 0 325 175 0 0 chr6 56770517 56770574 -132508980 - MIR SINE MIR -31 231 175 584 258 68 0 chr6 56771651 56771814 -132507740 - MIR SINE MIR -69 193 20 22 0 0 0 chr6 56771814 56771836 -132507718 + AT_rich Low_complexity Low_complexity 1 22 0 3460 82 0 0 chr6 56771836 56772288 -132507266 - L1PA14 LINE L1 -3 6158 5707 277 252 14 101 chr6 56772384 56772523 -132507031 + MIR SINE MIR 61 187 -75 239 370 0 12 chr6 56773144 56773225 -132506329 - L3 LINE CR1 -1 1576 1497 258 288 36 72 chr6 56773294 56773405 -132506149 + MIR SINE MIR 34 140 -122 53 0 0 0 chr6 56773565 56773618 -132505936 + AT_rich Low_complexity Low_complexity 1 53 0 388 194 97 10 chr6 56773629 56773732 -132505822 + MIR SINE MIR 151 262 0 1318 273 88 38 chr6 56773811 56774291 -132505263 - MLT1J LTR MaLR -2 509 6 2400 87 3 3 chr6 56776789 56777098 -132502456 + AluY SINE Alu 1 309 -2 245 301 0 24 chr6 56777282 56777365 -132502189 - MIR SINE MIR -111 97 17 335 297 136 0 chr6 56777389 56777544 -132502010 - MIR3 SINE MIR -30 178 3 1447 155 98 15 chr6 56777614 56777879 -132501675 + AluJo SINE Alu 11 297 -15 220 179 0 0 chr6 56778092 56778131 -132501423 - MER5B DNA MER1_type -139 39 1 389 227 25 68 chr6 56779404 56779567 -132499987 + L2 LINE L2 3158 3313 0 216 289 144 0 chr6 56779570 56779674 -132499880 - MIR SINE MIR -21 241 123 334 284 0 0 chr6 56781311 56781392 -132498162 + L2 LINE L2 3183 3263 -50 435 224 105 0 chr6 56781421 56781564 -132497990 + LTR33 LTR ERVL 1 158 -363 275 135 52 167 chr6 56781672 56781768 -132497786 + LTR33 LTR ERVL 434 518 -3 205 245 0 38 chr6 56782051 56782104 -132497450 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 322 232 40 80 chr6 56782216 56782341 -132497213 + MER117 DNA MER1_type 77 196 -1 248 231 0 77 chr6 56783084 56783162 -132496392 - MIR SINE MIR 0 262 191 1025 219 19 10 chr6 56783172 56783377 -132496177 - MER58A DNA MER1_type -1 223 17 2051 174 20 101 chr6 56783378 56783833 -132495721 + MER47B DNA MER2_type 1 418 0 234 305 23 10 chr6 56783848 56783986 -132495568 - MIR SINE MIR -54 208 34 1089 69 0 35 chr6 56783986 56784165 -132495389 - AluY SINE Alu 0 311 150 196 353 112 0 chr6 56784554 56784670 -132494884 + MIR SINE MIR 52 180 -82 375 267 9 38 chr6 56785071 56785176 -132494378 - L2 LINE L2 -16 3256 3155 1987 248 114 9 chr6 56786023 56786556 -132492998 - MLT1E LTR MaLR -4 589 1 41 72 0 0 chr6 56787082 56787165 -132492389 + AT_rich Low_complexity Low_complexity 1 83 0 277 302 112 35 chr6 56787168 56787284 -132492270 - MLT1I LTR MaLR -59 350 226 664 99 0 20 chr6 56787302 56787403 -132492151 - L1MA1 LINE L1 -1 6301 6203 360 178 136 46 chr6 56787585 56787805 -132491749 - Charlie2a DNA MER1_type -83 2779 1485 331 274 25 0 chr6 56787889 56787998 -132491556 - Charlie2b DNA MER1_type -2133 649 555 * 764 270 87 14 chr6 56787996 56788285 -132491269 - Charlie2b DNA MER1_type -2471 311 2 5118 182 20 5 chr6 56788392 56789237 -132490317 + MER21B LTR ERV1 1 858 -5 242 282 24 12 chr6 56789720 56789805 -132489749 + T-rich Low_complexity Low_complexity 1 86 0 423 289 12 15 chr6 56790060 56790190 -132489364 - MIR3 SINE MIR -4 204 75 347 286 55 23 chr6 56790495 56790670 -132488884 + MIR SINE MIR 19 206 -56 569 260 65 74 chr6 56790774 56791061 -132488493 + L2 LINE L2 2978 3263 -50 2018 106 65 0 chr6 56791061 56791354 -132488200 - AluSq SINE Alu -1 312 1 569 260 65 74 chr6 56791354 56791405 -132488149 + L2 LINE L2 3263 3313 0 21 0 0 0 chr6 56791680 56791701 -132487853 + AT_rich Low_complexity Low_complexity 1 21 0 1355 56 5 1 chr6 56791704 56791893 -132487661 - L1PA8 LINE L1 -61 6108 5921 274 225 42 0 chr6 56792316 56792387 -132487167 + (TTATA)n Simple_repeat Simple_repeat 5 78 0 206 121 0 0 chr6 56793950 56793983 -132485571 + (T)n Simple_repeat Simple_repeat 1 33 0 315 221 15 15 chr6 56794270 56794338 -132485216 + MER91B DNA MER1_type 6 73 -117 351 324 76 27 chr6 56794440 56794625 -132484929 + L2 LINE L2 2871 3064 -208 318 87 0 0 chr6 56795054 56795100 -132484454 + (CA)n Simple_repeat Simple_repeat 2 47 0 290 87 22 0 chr6 56795130 56795176 -132484378 + (TAA)n Simple_repeat Simple_repeat 2 48 0 686 285 47 17 chr6 56795178 56795413 -132484141 - MIR SINE MIR -13 249 8 194 308 19 0 chr6 56795622 56795674 -132483880 - L2 LINE L2 -78 3194 3142 257 148 0 19 chr6 56796648 56796702 -132482852 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 * 322 157 24 0 chr6 56796693 56796776 -132482778 + T-rich Low_complexity Low_complexity 4 88 0 189 0 0 0 chr6 56798693 56798714 -132480840 + (T)n Simple_repeat Simple_repeat 1 21 0 633 210 78 0 chr6 56800673 56800840 -132478714 - MER104 DNA MER2_type 0 180 1 3682 253 79 34 chr6 56800880 56803508 -132476046 + L1MEc LINE L1 775 3533 -2682 326 239 22 22 chr6 56803539 56803631 -132475923 + L1ME LINE L1 3 94 -5976 1224 41 24 6 chr6 56803632 56803730 -132475824 + (TTTC)n Simple_repeat Simple_repeat 1 272 0 1224 41 24 6 chr6 56803730 56803900 -132475654 + (TTTC)n Simple_repeat Simple_repeat 2 174 0 284 329 20 20 chr6 56804086 56804232 -132475322 + L1ME LINE L1 345 490 -5580 * 2776 242 118 44 chr6 56804221 56805885 -132473669 + L1ME LINE L1 383 2150 -3930 220 293 168 55 chr6 56807923 56808284 -132471270 - L2 LINE L2 -226 3087 2634 2461 193 51 32 chr6 56808288 56808486 -132471068 + L1ME2 LINE L1 5370 5563 -599 2546 146 32 0 chr6 56808486 56808863 -132470691 - MLT1B LTR MaLR 0 390 2 2461 193 51 32 chr6 56808863 56809256 -132470298 + L1ME2 LINE L1 5563 5972 -190 555 217 106 50 chr6 56809373 56809571 -132469983 + L1ME2 LINE L1 5944 6152 -12 264 256 11 22 chr6 56809677 56809767 -132469787 + MLT2F LTR ERVL 239 327 -336 309 320 59 20 chr6 56810083 56810236 -132469318 + MIR SINE MIR 8 166 -96 263 333 139 0 chr6 56811739 56811847 -132467707 - L2 LINE L2 -1 3271 3149 243 209 9 133 chr6 56812042 56812147 -132467407 + MER112 DNA MER1_type 73 164 -96 316 265 13 66 chr6 56812239 56812390 -132467164 + L3b LINE CR1 1234 1376 -207 739 295 100 8 chr6 56812761 56813022 -132466532 + L3 LINE CR1 1191 1475 -102 192 313 30 0 chr6 56813022 56813089 -132466465 - L2 LINE L2 -1 3271 3203 242 345 0 12 chr6 56813101 56813185 -132466369 + L3 LINE CR1 1486 1568 -9 204 205 0 0 chr6 56814034 56814073 -132465481 - MIR SINE MIR -7 255 217 336 48 0 0 chr6 56814651 56814693 -132464861 + (CA)n Simple_repeat Simple_repeat 2 43 0 496 250 29 43 chr6 56814861 56815001 -132464553 - MIR3 SINE MIR -51 157 20 192 320 41 49 chr6 56815441 56815563 -132463991 - L2 LINE L2 -9 3263 3143 261 0 0 0 chr6 56816822 56816851 -132462703 + (TG)n Simple_repeat Simple_repeat 1 29 0 525 279 157 5 chr6 56817645 56817849 -132461705 - MIR SINE MIR -26 236 2 478 229 51 51 chr6 56818233 56818390 -132461164 - MARNA DNA Mariner -8 578 422 378 286 186 7 chr6 56818394 56818534 -132461020 - MIR3 SINE MIR -33 175 11 545 246 42 24 chr6 56818547 56818714 -132460840 - MARNA DNA Mariner -172 414 245 25 0 0 0 chr6 56818720 56818745 -132460809 + AT_rich Low_complexity Low_complexity 1 25 0 345 159 0 0 chr6 56819941 56820004 -132459550 + (TA)n Simple_repeat Simple_repeat 1 63 0 1930 129 31 3 chr6 56820596 56820883 -132458671 - AluJb SINE Alu -17 295 1 187 278 167 33 chr6 56821967 56822057 -132457497 - MIR SINE MIR -71 191 90 346 272 0 0 chr6 56822231 56822312 -132457242 + MIR SINE MIR 77 157 -105 25 62 0 16 chr6 56822594 56822628 -132456926 + AT_rich Low_complexity Low_complexity 1 35 -28 222 62 0 0 chr6 56822628 56822660 -132456894 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 25 62 0 16 chr6 56822660 56822689 -132456865 + AT_rich Low_complexity Low_complexity 35 63 0 212 176 59 0 chr6 56823025 56823076 -132456478 + CT-rich Low_complexity Low_complexity 2 55 0 21 0 0 0 chr6 56824003 56824024 -132455530 + AT_rich Low_complexity Low_complexity 1 21 0 763 266 19 23 chr6 56825238 56825452 -132454102 - MIR SINE MIR 0 262 50 1373 174 9 9 chr6 56825635 56825853 -132453701 - MER58A DNA MER1_type -2 222 5 324 304 72 16 chr6 56826895 56827020 -132452534 - MER94 DNA DNA 0 134 3 1006 209 43 22 chr6 56829238 56829468 -132450086 + MER106A DNA MER1_type 1 235 -1 4518 239 23 27 chr6 56830352 56831246 -132448308 + L1M4 LINE L1 3809 4697 -1449 2073 111 7 10 chr6 56831246 56831544 -132448010 + AluSg SINE Alu 1 297 -13 4518 239 23 27 chr6 56831544 56831934 -132447620 + L1M4 LINE L1 4697 5087 -1059 642 130 200 0 chr6 56831964 56832079 -132447475 - FLAM_C SINE Alu 0 143 6 645 272 31 90 chr6 56832365 56832755 -132446799 - MLT1J LTR MaLR -141 370 4 562 295 31 84 chr6 56832889 56833493 -132446061 - HAL1 LINE L1 -999 1508 937 243 0 0 0 chr6 56834293 56834320 -132445234 + (TG)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr6 56835020 56835044 -132444510 + AT_rich Low_complexity Low_complexity 1 24 0 354 43 0 0 chr6 56836270 56836316 -132443238 + L1PA6 LINE L1 6105 6150 -4 240 296 174 17 chr6 56836444 56836616 -132442938 - MIR3 SINE MIR -8 200 2 215 59 0 29 chr6 56836952 56836986 -132442568 + (TC)n Simple_repeat Simple_repeat 2 34 0 246 62 0 0 chr6 56836986 56837018 -132442536 + (CA)n Simple_repeat Simple_repeat 1 32 0 349 222 78 0 chr6 56837038 56837128 -132442426 - MER112 DNA MER1_type -5 255 159 2409 65 0 3 chr6 56837700 56837994 -132441560 - AluY SINE Alu -18 293 1 1297 173 90 7 chr6 56840954 56841244 -132438310 + MER33 DNA MER1_type 1 304 -20 1503 294 94 57 chr6 56841244 56842611 -132436943 + L2 LINE L2 1557 2974 -340 339 299 56 21 chr6 56842886 56843030 -132436524 + L2 LINE L2 3122 3270 -2 328 219 210 17 chr6 56843354 56843473 -132436081 + MIR SINE MIR 47 188 -74 2222 117 42 31 chr6 56843899 56844259 -132435295 - THE1B LTR MaLR 0 364 1 483 300 68 5 chr6 56844367 56844557 -132434997 - L2 LINE L2 -244 3069 2868 1071 299 110 29 chr6 56844602 56845292 -132434262 - L2 LINE L2 -710 2604 1859 188 340 78 0 chr6 56846424 56846527 -132433027 - L2 LINE L2 -2 3270 3160 219 238 99 40 chr6 56847025 56847126 -132432428 + MIR SINE MIR 156 262 0 253 361 33 33 chr6 56847843 56848023 -132431531 + MER5A DNA MER1_type 2 181 -8 474 263 0 18 chr6 56848407 56848521 -132431033 - MER81 DNA DNA -1 113 2 799 299 39 29 chr6 56853604 56853915 -132425639 + L3b LINE CR1 1137 1450 -133 181 186 51 0 chr6 56854458 56854517 -132425037 + CT-rich Low_complexity Low_complexity 3 64 0 625 226 17 4 chr6 56855413 56855652 -132423902 + GA-rich Low_complexity Low_complexity 1 242 0 2233 147 14 8 chr6 56856220 56856581 -132422973 + MLT1A1 LTR MaLR 3 365 0 358 224 0 0 chr6 56857636 56857712 -132421842 - MER116 DNA Mariner -1 79 4 252 0 0 0 chr6 56858217 56858245 -132421309 + (GGA)n Simple_repeat Simple_repeat 3 30 0 968 199 38 24 chr6 56858464 56858675 -132420879 + MER20 DNA MER1_type 6 219 0 570 234 9 0 chr6 56859081 56859188 -132420366 - MER81 DNA DNA -5 109 2 384 239 31 0 chr6 56859241 56859344 -132420210 + L1MD2 LINE L1 6254 7769 -16 189 0 0 0 chr6 56860189 56860210 -132419344 + (T)n Simple_repeat Simple_repeat 1 21 0 347 255 71 50 chr6 56860747 56860888 -132418666 - MER5B DNA MER1_type -33 145 2 227 348 43 0 chr6 56860888 56861003 -132418551 - MIR3 SINE MIR -48 160 41 307 226 16 0 chr6 56861130 56861192 -132418362 + L2 LINE L2 3251 3313 0 775 203 85 38 chr6 56861950 56862162 -132417392 + MER106A DNA MER1_type 15 236 0 196 162 29 132 chr6 56862610 56862678 -132416876 + MIR SINE MIR 119 179 -83 280 214 175 16 chr6 56862854 56862980 -132416574 - MLT1J LTR MaLR -365 146 1 411 21 0 0 chr6 56863471 56863519 -132416035 + (CA)n Simple_repeat Simple_repeat 2 49 0 2317 60 0 7 chr6 56863548 56863858 -132415696 + AluY SINE Alu 1 308 0 203 336 139 0 chr6 56864174 56864311 -132415243 + L2 LINE L2 2909 3064 -208 182 191 0 0 chr6 56864413 56864455 -132415099 + L2 LINE L2 3272 3313 0 390 355 38 0 chr6 56864562 56864745 -132414809 + MIR SINE MIR 73 262 0 2176 95 3 3 chr6 56865479 56865797 -132413757 + AluSx SINE Alu 1 318 0 267 346 115 0 chr6 56866064 56866246 -132413308 - MIR SINE MIR 0 262 60 331 304 76 27 chr6 56866344 56866528 -132413026 + MIR3 SINE MIR 5 197 -11 2524 48 0 0 chr6 56866756 56867049 -132412505 + AluY SINE Alu 1 293 -18 1058 277 117 20 chr6 56867453 56867958 -132411596 - MLT1H1 LTR MaLR -1 554 1 658 258 205 25 chr6 56868083 56868625 -132410929 + L2 LINE L2 2671 3313 0 370 263 45 15 chr6 56868680 56868813 -132410741 - MIR3 SINE MIR -68 140 4 243 125 0 0 chr6 56869128 56869168 -132410386 + (T)n Simple_repeat Simple_repeat 1 40 0 292 315 162 13 chr6 56869455 56869690 -132409864 - L3 LINE CR1 -20 1557 1288 360 0 0 0 chr6 56869819 56869859 -132409695 + (TG)n Simple_repeat Simple_repeat 2 41 0 733 257 34 17 chr6 56869881 56870118 -132409436 + MIR SINE MIR 7 247 -15 1751 179 27 0 chr6 56870767 56871068 -132408486 - AluJb SINE Alu -3 309 1 199 208 21 0 chr6 56871070 56871118 -132408436 - L2 LINE L2 -12 3260 3212 2413 100 3 0 chr6 56871328 56871637 -132407917 - AluSp SINE Alu -3 310 1 340 263 8 68 chr6 56874343 56874456 -132405098 + MIR SINE MIR 111 216 -46 421 204 204 8 chr6 56874456 56874588 -132404966 - MER5A DNA MER1_type 0 189 32 209 276 236 8 chr6 56874482 56874605 -132404949 + MER5A DNA MER1_type 39 189 0 * 189 241 0 19 chr6 56874606 56874660 -132404894 + MIR SINE MIR 210 262 0 234 121 35 52 chr6 56876576 56876634 -132402920 + L2 LINE L2 2985 3041 -231 612 279 27 42 chr6 56877085 56877347 -132402207 - MIR SINE MIR -3 259 2 290 183 17 0 chr6 56877455 56877515 -132402039 + L2 LINE L2 3253 3313 0 279 157 0 0 chr6 56878191 56878242 -132401312 + (TG)n Simple_repeat Simple_repeat 1 51 0 1689 260 81 30 chr6 56878581 56878907 -132400647 + MER69 DNA AcHobo 9 374 -2152 4015 59 34 0 chr6 56878907 56879414 -132400140 - L1PA7 LINE L1 -7 6147 5624 1689 260 81 30 chr6 56879414 56879621 -132399933 + MER69 DNA AcHobo 374 569 -1957 286 255 50 57 chr6 56880415 56880556 -132398998 + MIR3 SINE MIR 66 205 -3 2510 64 0 3 chr6 56880714 56881012 -132398542 - AluY SINE Alu -14 297 1 231 268 0 14 chr6 56881619 56881690 -132397864 + MIR SINE MIR 13 82 -180 208 417 9 9 chr6 56883257 56883372 -132396182 + MIR SINE MIR 16 130 -78 493 224 68 19 chr6 56884558 56884719 -132394835 - MIR3 SINE MIR -6 202 34 229 279 24 0 chr6 56885223 56885291 -132394263 - MIR SINE MIR -46 162 88 18688 31 1 0 chr6 56885321 56888293 -132391261 - L1PA3 LINE L1 -3 6152 3179 210 364 11 0 chr6 56889251 56889339 -132390215 - MIR SINE MIR -78 130 42 273 261 239 0 chr6 56889396 56889484 -132390070 + L2 LINE L2 3163 3271 -1 243 233 27 14 chr6 56890108 56890181 -132389373 + L2 LINE L2 2686 2759 -555 2332 78 0 3 chr6 56890414 56890731 -132388823 + AluY SINE Alu 1 316 0 308 330 40 0 chr6 56891643 56891743 -132387811 + MIR SINE MIR 103 206 -56 807 366 54 16 chr6 56891790 56892347 -132387207 + L3 LINE CR1 180 757 -820 213 216 0 0 chr6 56893191 56893228 -132386326 - MIR SINE MIR -9 253 217 487 323 9 31 chr6 56893517 56893746 -132385808 - MIR SINE MIR -31 231 8 245 226 19 0 chr6 56894575 56894628 -132384926 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 279 183 55 18 chr6 56894632 56894796 -132384758 + (TA)n Simple_repeat Simple_repeat 2 171 0 1436 308 68 12 chr6 56895126 56895701 -132383853 - MLT1L LTR MaLR -8 607 1 212 167 264 0 chr6 56896001 56896073 -132383481 - MIR SINE MIR -5 257 167 280 256 0 39 chr6 56896428 56896506 -132383048 + MIR SINE MIR 113 187 -75 21 36 0 0 chr6 56896544 56896572 -132382982 + AT_rich Low_complexity Low_complexity 1 28 0 418 255 114 34 chr6 56897154 56897303 -132382251 + MER103 DNA DNA 4 164 -2 257 192 0 0 chr6 56897367 56897419 -132382135 - MIR SINE MIR -66 142 91 920 205 11 0 chr6 56897462 56897647 -132381907 - MER5A DNA MER1_type -2 187 1 333 276 29 0 chr6 56899644 56899749 -132379805 - MIR SINE MIR -72 190 83 189 0 0 0 chr6 56899950 56899971 -132379583 + (A)n Simple_repeat Simple_repeat 1 21 0 1284 185 140 11 chr6 56900083 56900440 -132379114 - MER69 DNA AcHobo -110 2416 2014 1815 258 53 48 chr6 56900443 56900989 -132378565 - MER69 DNA AcHobo -658 568 20 832 221 11 22 chr6 56901162 56901343 -132378211 - MER58A DNA MER1_type 0 224 46 228 35 0 0 chr6 56902473 56902502 -132377052 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1682 144 43 0 chr6 56902517 56902773 -132376781 - AluSq SINE Alu -46 267 1 290 244 16 65 chr6 56903015 56903138 -132376416 + MIR SINE MIR 3 119 -143 226 265 0 0 chr6 56904158 56904207 -132375347 + CT-rich Low_complexity Low_complexity 4 52 0 183 80 0 0 chr6 56904210 56904235 -132375319 + (TTCCC)n Simple_repeat Simple_repeat 5 29 0 717 142 11 38 chr6 56904267 56904450 -132375104 + CT-rich Low_complexity Low_complexity 1 178 0 214 133 0 0 chr6 56904450 56904480 -132375074 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 775 128 12 35 chr6 56904480 56904652 -132374902 + CT-rich Low_complexity Low_complexity 3 170 0 264 284 276 0 chr6 56905319 56905453 -132374101 + MER5A DNA MER1_type 12 182 -7 799 262 18 24 chr6 56905526 56905846 -132373708 - LTR37B LTR ERV1 -8 459 111 406 237 65 36 chr6 56905835 56905974 -132373580 - LTR37B LTR ERV1 -270 198 56 * 3966 165 41 39 chr6 56906384 56907172 -132372382 + MER54B LTR ERVL 1 789 -4 208 349 57 9 chr6 56909530 56909636 -132369918 + MIR SINE MIR 1 111 -151 1813 82 0 4 chr6 56909951 56910183 -132369371 + AluSg SINE Alu 35 265 -45 198 0 0 0 chr6 56910183 56910205 -132369349 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 198 254 68 0 chr6 56911619 56911678 -132367876 + L2 LINE L2 3250 3312 -1 1562 255 174 6 chr6 56912474 56912980 -132366574 + MLT1E LTR MaLR 1 591 -2 321 309 81 8 chr6 56913414 56913537 -132366017 - MER5A DNA MER1_type -30 159 28 748 289 37 9 chr6 56913788 56914006 -132365548 - MIR SINE MIR -35 227 4 848 259 47 111 chr6 56914338 56914560 -132364994 + MLT1L LTR MaLR 18 253 -362 1293 208 159 14 chr6 56914560 56914906 -132364648 + MSTD LTR MaLR 1 396 0 848 259 47 111 chr6 56914906 56915105 -132364449 + MLT1L LTR MaLR 253 509 -106 2081 125 0 4 chr6 56915105 56915426 -132364128 - AluSc SINE Alu 0 320 1 848 259 47 111 chr6 56915426 56915525 -132364029 + MLT1L LTR MaLR 509 613 -2 318 322 186 0 chr6 56915627 56915804 -132363750 + MIR SINE MIR 20 229 -33 182 342 97 0 chr6 56915841 56915955 -132363599 - MIR SINE MIR 0 262 138 279 239 14 14 chr6 56916795 56916866 -132362688 - MIR SINE MIR -89 119 49 221 282 28 39 chr6 56917064 56917245 -132362309 + (CATA)n Simple_repeat Simple_repeat 1 179 0 * 231 254 0 16 chr6 56917226 56917289 -132362265 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 220 326 171 17 chr6 56917516 56917691 -132361863 - MIR SINE MIR 0 262 61 24 0 0 0 chr6 56918878 56918902 -132360652 + AT_rich Low_complexity Low_complexity 1 24 0 289 328 82 8 chr6 56921400 56921534 -132358020 - MER103 DNA DNA -20 146 3 197 176 0 0 chr6 56921581 56921615 -132357939 + MIR3 SINE MIR 164 197 -11 318 330 72 69 chr6 56921750 56922099 -132357455 - L2 LINE L2 -5 3267 2918 491 291 35 47 chr6 56922218 56922390 -132357164 - MLT1L LTR MaLR -59 556 387 384 131 45 0 chr6 56922725 56922803 -132356751 - MLT1J LTR MaLR -321 125 43 329 128 0 78 chr6 56922976 56923078 -132356476 + (TCCCC)n Simple_repeat Simple_repeat 5 98 0 * 767 164 23 0 chr6 56923076 56923247 -132356307 + CT-rich Low_complexity Low_complexity 2 176 0 441 270 47 0 chr6 56925372 56925520 -132354034 - MER103 DNA DNA -10 156 2 1681 131 65 0 chr6 56925729 56926004 -132353550 + L1MA5A LINE L1 6005 6297 0 541 75 0 0 chr6 56926171 56926238 -132353316 + U6 snRNA snRNA 1 67 -40 1358 161 124 11 chr6 56926240 56926514 -132353040 + L1MA1 LINE L1 5998 6302 0 198 0 0 0 chr6 56926518 56926540 -132353014 + (A)n Simple_repeat Simple_repeat 1 22 0 2789 166 53 2 chr6 56926889 56927418 -132352136 - LTR38 LTR ERV1 0 556 1 197 160 0 20 chr6 56928620 56928670 -132350884 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 30 45 0 0 chr6 56928670 56928714 -132350840 + AT_rich Low_complexity Low_complexity 1 44 0 199 292 0 15 chr6 56929373 56929438 -132350116 + MIR SINE MIR 97 160 -102 623 119 60 7 chr6 56929472 56929623 -132349931 + CT-rich Low_complexity Low_complexity 2 160 0 2008 130 3 10 chr6 56929628 56929928 -132349626 - AluSq SINE Alu -2 311 14 389 331 32 28 chr6 56933035 56933283 -132346271 + L2 LINE L2 2633 2881 -433 768 243 29 0 chr6 56933406 56933616 -132345938 - L2 LINE L2 -203 3110 2895 2525 143 107 15 chr6 56934140 56934616 -132344938 - L1MB3 LINE L1 -3 6180 5661 238 330 50 20 chr6 56935231 56935383 -132344171 + MIR SINE MIR 6 162 -46 677 188 83 14 chr6 56935423 56935567 -132343987 - MER5B DNA MER1_type -12 166 13 442 268 196 0 chr6 56935682 56935876 -132343678 + MIR SINE MIR 31 262 0 525 247 70 104 chr6 56936569 56936925 -132342629 + L2 LINE L2 2461 2804 -510 1398 225 176 21 chr6 56936932 56937359 -132342195 - MLT1J LTR MaLR -8 503 11 469 269 169 59 chr6 56937376 56937815 -132341739 + L2 LINE L2 2827 3313 0 294 250 15 15 chr6 56937964 56938032 -132341522 + MIR SINE MIR 17 84 -124 752 257 48 0 chr6 56938049 56938255 -132341299 - L2 LINE L2 -757 2557 2342 320 319 62 42 chr6 56938735 56938976 -132340578 - L1MC/D LINE L1 -2212 5596 5351 315 272 87 0 chr6 56939416 56939519 -132340035 + L2 LINE L2 3202 3313 0 245 308 82 38 chr6 56939540 56939699 -132339855 + MIR3 SINE MIR 32 197 -11 * 250 352 11 0 chr6 56939679 56939770 -132339784 + MIR SINE MIR 77 168 -94 450 96 32 43 chr6 56939773 56939867 -132339687 - MER53 DNA DNA -1 188 96 580 231 8 0 chr6 56939974 56940091 -132339463 - L2 LINE L2 -5 3308 3191 717 34 0 0 chr6 56940668 56940756 -132338798 + (TTCTC)n Simple_repeat Simple_repeat 5 92 0 2284 85 3 0 chr6 56940757 56941040 -132338514 - AluSg SINE Alu -26 284 1 1585 189 65 0 chr6 56941449 56941724 -132337830 - AluJb SINE Alu -19 293 1 459 262 53 43 chr6 56942521 56942708 -132336846 - MIR3 SINE MIR -15 193 5 287 330 69 69 chr6 56942917 56943150 -132336404 + L2 LINE L2 3037 3269 -3 21 36 0 0 chr6 56943608 56943636 -132335918 + GC_rich Low_complexity Low_complexity 1 28 0 943 189 0 0 chr6 56944572 56944731 -132334823 - AluJb SINE Alu -17 295 137 379 179 63 11 chr6 56944865 56944960 -132334594 - MER20 DNA MER1_type -87 132 33 1074 79 0 0 chr6 56945146 56945272 -132334282 + AluSq/x SINE Alu 7 132 -180 539 297 35 8 chr6 56997851 56998107 -132281447 + L1ME4a LINE L1 5612 5874 -247 267 275 11 0 chr6 56998163 56998254 -132281300 + L1ME4a LINE L1 5984 6075 -46 1119 199 66 8 chr6 56998458 56998699 -132280855 + MIR SINE MIR 8 262 0 755 211 62 0 chr6 56998793 56998954 -132280600 + MER45A DNA AcHobo 7 177 -1 734 201 0 6 chr6 56999014 56999178 -132280376 + CT-rich Low_complexity Low_complexity 3 165 0 1042 299 165 25 chr6 56999278 56999931 -132279623 - HAL1 LINE L1 -1762 745 1 305 310 177 31 chr6 57000498 57000724 -132278830 - MIR SINE MIR 0 262 4 1672 134 51 0 chr6 57001387 57001640 -132277914 - AluJb SINE Alu -19 293 28 611 127 0 97 chr6 57003821 57003955 -132275599 - L2 LINE L2 -1 3312 3192 1394 193 34 95 chr6 57003980 57004151 -132275403 + MLT1B LTR MaLR 4 184 -206 2221 119 0 3 chr6 57004151 57004461 -132275093 + AluY SINE Alu 1 309 -2 1394 193 34 95 chr6 57004461 57004698 -132274856 + MLT1B LTR MaLR 184 387 -3 2151 238 47 60 chr6 57005278 57005879 -132273675 - MLT1E LTR MaLR 0 593 1 448 307 34 22 chr6 57006358 57006537 -132273017 + MIR SINE MIR 81 261 -1 273 182 0 0 chr6 57006628 57006672 -132272882 + LTR67 LTR ERVL 97 140 -417 423 336 111 9 chr6 57006760 57006986 -132272568 + MLT1L LTR MaLR 367 615 0 1229 224 34 44 chr6 57007390 57007685 -132271869 - AluJo SINE Alu -18 294 3 326 149 0 0 chr6 57008028 57008075 -132271479 + Charlie5 DNA MER1_type 21 67 -2545 814 243 80 19 chr6 57009380 57009674 -132269880 - MLT1D LTR MaLR -4 501 161 1135 144 0 0 chr6 57009685 57009845 -132269709 + AluSc SINE Alu 130 289 -20 773 141 41 71 chr6 57009862 57009982 -132269572 - MLT1D LTR MaLR -335 170 48 2196 123 85 20 chr6 57009982 57010324 -132269230 + THE1B LTR MaLR 1 364 0 12570 89 8 1 chr6 57010324 57011893 -132267661 + THE1B-int LTR MaLR 1 1580 0 2356 108 71 40 chr6 57011893 57012246 -132267308 + THE1B LTR MaLR 1 364 0 773 141 41 71 chr6 57012246 57012293 -132267261 - MLT1D LTR MaLR -454 51 6 441 316 138 4 chr6 57012313 57012538 -132267016 + MLT1L LTR MaLR 353 607 -8 186 282 12 59 chr6 57012677 57012762 -132266792 + L2 LINE L2 3139 3219 -94 207 0 0 0 chr6 57013021 57013044 -132266510 + (CA)n Simple_repeat Simple_repeat 1 23 0 33 25 0 0 chr6 57013744 57013784 -132265770 + AT_rich Low_complexity Low_complexity 1 40 0 2405 80 0 3 chr6 57013969 57014269 -132265285 + AluY SINE Alu 1 299 -12 724 252 37 72 chr6 57014650 57014811 -132264743 + MER110 LTR ERV1 149 296 -195 2225 86 0 7 chr6 57014811 57015131 -132264423 - AluSg1 SINE Alu 0 318 1 724 252 37 72 chr6 57015131 57015289 -132264265 + MER110 LTR ERV1 296 458 -33 804 216 31 35 chr6 57015912 57015966 -132263588 + MER112 DNA MER1_type 28 81 -179 279 93 0 0 chr6 57015966 57016009 -132263545 + (TG)n Simple_repeat Simple_repeat 2 44 0 804 216 31 35 chr6 57016009 57016181 -132263373 + MER112 DNA MER1_type 81 253 -7 336 295 80 10 chr6 57017830 57017969 -132261585 - MIR SINE MIR -57 151 1 302 319 151 8 chr6 57018525 57018644 -132260910 - L2 LINE L2 0 3272 3137 685 279 44 20 chr6 57018671 57018922 -132260632 + MIR SINE MIR 6 262 0 1217 149 33 19 chr6 57019043 57019257 -132260297 + MER20 DNA MER1_type 3 219 0 565 276 0 0 chr6 57019257 57019380 -132260174 + MIR SINE MIR 17 139 -123 2232 84 7 0 chr6 57020001 57020286 -132259268 + AluSx SINE Alu 1 287 -25 1311 91 0 0 chr6 57020301 57020466 -132259088 + AluSg/x SINE Alu 133 297 -13 773 235 49 0 chr6 57021840 57022023 -132257531 + MER58C DNA MER1_type 23 214 -1 279 0 0 0 chr6 57022186 57022217 -132257337 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 724 171 0 0 chr6 57022227 57022332 -132257222 - FLAM_A SINE Alu -32 110 6 235 184 20 0 chr6 57022381 57022430 -132257124 - L2 LINE L2 -2 3311 3262 202 284 55 47 chr6 57023209 57023336 -132256218 - L2 LINE L2 -160 3112 2985 324 337 63 0 chr6 57023860 57024050 -132255504 - L1ME LINE L1 -303 5818 5617 339 341 16 8 chr6 57024069 57024195 -132255359 + MIR SINE MIR 104 230 -32 1889 156 12 42 chr6 57025150 57025484 -132254070 + MLT2B2 LTR ERVL 1 324 -191 1652 164 71 45 chr6 57025730 57026066 -132253488 + MER47A DNA MER2_type 20 364 -2 348 283 33 0 chr6 57026068 57026188 -132253366 - L1ME4a LINE L1 -219 5902 5779 23 0 0 0 chr6 57026293 57026316 -132253238 + AT_rich Low_complexity Low_complexity 1 23 0 1464 224 32 96 chr6 57026608 57027140 -132252414 + L1M4 LINE L1 4501 4998 -1148 388 283 63 53 chr6 57027397 57027697 -132251857 + L1MEd LINE L1 777 1079 -5040 1402 299 80 17 chr6 57027697 57028300 -132251254 - ERVL LTR ERVL -655 5109 4469 716 297 72 10 chr6 57028510 57028816 -132250738 - ERVL LTR ERVL -1641 4123 3799 385 316 61 36 chr6 57029919 57030115 -132249439 + MIR SINE MIR 61 261 -1 993 74 0 0 chr6 57031578 57031722 -132247832 + AluSg/x SINE Alu 162 305 0 587 71 0 0 chr6 57033048 57033118 -132246436 - AluSg SINE Alu -185 125 56 1376 115 0 5 chr6 57033118 57033310 -132246244 + AluSg/x SINE Alu 122 312 0 2898 233 45 14 chr6 57033596 57034284 -132245270 - L1ME1 LINE L1 -5 6161 5453 1528 214 93 19 chr6 57034347 57034777 -132244777 + MLT1C LTR MaLR 6 467 0 2172 116 0 3 chr6 57038886 57039188 -132240366 + AluSx SINE Alu 1 301 -11 197 65 32 0 chr6 57039796 57039827 -132239727 + (TA)n Simple_repeat Simple_repeat 2 33 0 1499 181 48 10 chr6 57041995 57042287 -132237267 + AluJo SINE Alu 1 303 -9 282 209 11 22 chr6 57042295 57042386 -132237168 + GA-rich Low_complexity Low_complexity 3 92 0 2607 48 0 6 chr6 57043540 57043851 -132235703 + AluY SINE Alu 1 309 -2 454 151 0 0 chr6 57044175 57044248 -132235306 + MER5A DNA MER1_type 1 73 -116 4303 25 0 0 chr6 57044249 57044769 -132234785 - L1PA2 LINE L1 -771 5375 4856 2744 18 0 8 chr6 57044765 57045363 -132234191 + L1PA2 LINE L1 5374 6154 -1 * 264 189 19 0 chr6 57045363 57045416 -132234138 + MER5A DNA MER1_type 62 115 -74 233 265 0 0 chr6 57046443 57046492 -132233062 + L2 LINE L2 3257 3305 -8 205 86 29 0 chr6 57046510 57046545 -132233009 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 267 31 0 0 chr6 57047385 57047417 -132232137 + (CA)n Simple_repeat Simple_repeat 2 33 0 256 286 218 0 chr6 57049862 57049995 -132229559 - MIR3 SINE MIR -23 185 24 5296 209 136 46 chr6 57050316 57055991 -132223563 + L1MD2 LINE L1 8 6220 -282 245 265 0 0 chr6 57055993 57056042 -132223512 + L1MD2 LINE L1 6282 6330 -289 801 216 49 11 chr6 57056049 57056234 -132223320 - MLT1A2 LTR MaLR -4 370 179 5684 258 92 21 chr6 57056494 57057591 -132221963 - L1M4 LINE L1 -1338 4808 3790 2114 98 0 0 chr6 57057591 57057868 -132221686 + AluSc SINE Alu 1 277 -32 468 51 0 0 chr6 57057868 57057927 -132221627 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 5684 258 92 21 chr6 57057927 57059154 -132220400 - L1M4 LINE L1 -2356 3790 2294 2679 97 14 0 chr6 57059154 57059524 -132220030 + THE1C LTR MaLR 1 375 0 5684 258 92 21 chr6 57059524 57059686 -132219868 - L1M4 LINE L1 -3852 2294 2145 234 213 49 0 chr6 57059830 57059891 -132219663 + L1P LINE L1 3634 3697 -2449 185 244 134 59 chr6 57060672 57060791 -132218763 - L2 LINE L2 -1046 2268 2141 388 244 6 6 chr6 57060921 57061081 -132218473 + (CATATA)n Simple_repeat Simple_repeat 6 165 0 23 0 0 0 chr6 57061993 57062016 -132217538 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr6 57062701 57062730 -132216824 + AT_rich Low_complexity Low_complexity 1 29 0 228 217 108 0 chr6 57065955 57066038 -132213516 + L1MC5 LINE L1 7848 7939 -22 415 101 88 0 chr6 57066115 57066274 -132213280 + (TA)n Simple_repeat Simple_repeat 1 173 0 227 254 56 56 chr6 57066283 57066425 -132213129 + L1ME4a LINE L1 5956 6097 -24 963 241 14 0 chr6 57066511 57066731 -132212823 + MER58A DNA MER1_type 1 223 -1 292 347 177 39 chr6 57070006 57070470 -132209084 - L2 LINE L2 -1920 1394 867 316 219 16 140 chr6 57071602 57071731 -132207823 - MER5A DNA MER1_type -28 161 38 4160 180 53 15 chr6 57072664 57073884 -132205670 + L1MB8 LINE L1 4903 6173 -5 348 305 84 15 chr6 57074232 57074363 -132205191 + MIR3 SINE MIR 11 150 -58 9882 28 7 0 chr6 57075466 57077416 -132202138 + L1PA3 LINE L1 4190 6150 -5 458 221 101 51 chr6 57077668 57077826 -132201728 + MIR SINE MIR 15 180 -82 273 250 97 0 chr6 57079399 57079471 -132200083 + L2 LINE L2 3175 3253 -60 457 332 96 0 chr6 57079843 57080030 -132199524 + MIR SINE MIR 27 231 -31 463 279 43 11 chr6 57080493 57080678 -132198876 - MLT1L LTR MaLR -60 555 329 294 230 175 8 chr6 57080741 57080867 -132198687 - MLT1L LTR MaLR -350 265 119 1726 89 19 0 chr6 57081233 57081490 -132198064 + L1MA4A LINE L1 6040 6301 -2 187 365 47 28 chr6 57082178 57082285 -132197269 - L2 LINE L2 -13 3300 3192 1220 257 78 108 chr6 57082311 57082448 -132197106 + MLT1K LTR MaLR 10 149 -439 464 301 9 0 chr6 57082448 57082561 -132196993 + MER81 DNA DNA 1 114 0 1220 257 78 108 chr6 57082561 57082971 -132196583 + MLT1K LTR MaLR 149 541 -47 22 0 0 0 chr6 57082977 57082999 -132196555 + AT_rich Low_complexity Low_complexity 1 22 0 34909 53 2 0 chr6 57082999 57089122 -132190432 - L1PA5 LINE L1 -8 6146 11 1734 174 162 35 chr6 57089365 57089796 -132189758 - MLT1D LTR MaLR -5 500 15 213 376 43 26 chr6 57089963 57090080 -132189474 - L2 LINE L2 -20 3252 3134 516 202 28 9 chr6 57090092 57090201 -132189353 - MER94 DNA DNA -23 111 1 217 314 59 0 chr6 57090220 57090322 -132189232 - L2 LINE L2 -16 3297 3190 489 219 159 7 chr6 57090640 57090791 -132188763 - MER104 DNA Tc2 -3 177 4 292 330 62 20 chr6 57091161 57091322 -132188232 - MER5A DNA MER1_type -3 186 7 490 335 36 31 chr6 57091997 57092221 -132187333 - MIR SINE MIR -21 241 17 646 115 0 10 chr6 57093799 57093895 -132185659 - MLT1B LTR MaLR 0 390 296 3078 180 17 24 chr6 57093898 57094488 -132185066 + LTR60 LTR ERV1 1 586 0 286 260 31 10 chr6 57094513 57094609 -132184945 + TAR1 Satellite telomeric 196 293 -1818 1496 172 37 33 chr6 57094626 57094933 -132184621 - MLT1B LTR MaLR -79 388 1 330 291 65 95 chr6 57095169 57095509 -132184045 + L2 LINE L2 2554 2880 -434 2109 132 3 0 chr6 57095509 57095805 -132183749 - AluSx SINE Alu -15 297 1 330 291 65 95 chr6 57095805 57095897 -132183657 + L2 LINE L2 2880 2973 -341 2811 140 65 19 chr6 57095977 57096501 -132183053 - LTR49 LTR ERV1 -44 743 1 2707 112 25 8 chr6 57096508 57096866 -132182688 - THE1B LTR MaLR 0 364 1 24855 141 98 113 chr6 57096866 57098177 -132181377 - LTR49-int LTR ERV1 -2 6329 5000 4619 68 37 8 chr6 57098177 57098765 -132180789 - LTR14B LTR ERVK 0 608 4 24855 141 98 113 chr6 57098765 57099053 -132180501 - LTR49-int LTR ERV1 -1331 5000 4709 935 94 16 0 chr6 57099053 57099181 -132180373 - AluSc SINE Alu -178 131 2 24855 141 98 113 chr6 57099181 57099882 -132179672 - LTR49-int LTR ERV1 -1622 4709 3999 2083 116 3 7 chr6 57099882 57100166 -132179388 + AluSq SINE Alu 1 283 -30 24855 141 98 113 chr6 57100166 57100177 -132179377 - LTR49-int LTR ERV1 -2332 3999 3989 306 0 0 0 chr6 57100177 57100211 -132179343 + (CA)n Simple_repeat Simple_repeat 1 34 0 24855 141 98 113 chr6 57100211 57100523 -132179031 - LTR49-int LTR ERV1 -2342 3989 3674 2198 112 13 0 chr6 57100523 57100826 -132178728 - AluSp SINE Alu -6 307 1 24855 141 98 113 chr6 57100826 57102174 -132177380 - LTR49-int LTR ERV1 -2657 3674 2307 2106 116 0 14 chr6 57102174 57102458 -132177096 + AluSc SINE Alu 1 280 -29 24855 141 98 113 chr6 57102458 57103606 -132175948 - LTR49-int LTR ERV1 -4024 2307 1131 262 310 0 0 chr6 57103606 57103664 -132175890 - tRNA-Glu-GAG tRNA tRNA 0 75 18 24855 141 98 113 chr6 57103664 57104779 -132174775 - LTR49-int LTR ERV1 -5200 1131 1 3030 136 138 17 chr6 57104782 57105312 -132174242 - LTR49 LTR ERV1 -1 594 1 205 302 67 47 chr6 57105387 57105488 -132174066 + MIR SINE MIR 43 148 -65 3231 136 156 2 chr6 57105965 57106524 -132173030 + MER39B LTR ERV1 4 648 -5 1478 137 33 4 chr6 57106784 57107221 -132172333 + LTR54 LTR ERV1 1 510 0 1583 120 22 19 chr6 57107593 57107860 -132171694 + LTR49 LTR ERV1 328 595 0 22 56 0 0 chr6 57107896 57107932 -132171622 + AT_rich Low_complexity Low_complexity 1 36 0 260 300 0 0 chr6 57108174 57108244 -132171310 + MIR SINE MIR 80 149 -113 198 91 0 0 chr6 57108284 57108317 -132171237 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr6 57109079 57109102 -132170452 + AT_rich Low_complexity Low_complexity 1 23 0 392 258 26 45 chr6 57110475 57110630 -132168924 + MER5B DNA MER1_type 24 175 -3 285 222 182 0 chr6 57111236 57111335 -132168219 - L1MC4 LINE L1 -1 8041 7925 1273 211 14 61 chr6 57111493 57111854 -132167700 - L1ME2 LINE L1 -10 6154 5811 818 218 125 0 chr6 57111936 57112152 -132167402 + MLT1F LTR MaLR 177 419 -123 378 268 0 0 chr6 57112178 57112260 -132167294 - L1ME2 LINE L1 -366 5800 5719 2363 169 78 0 chr6 57112261 57112658 -132166896 + MSTA LTR MaLR 1 428 0 9775 167 36 7 chr6 57112728 57114332 -132165222 + MSTA-int LTR MaLR 1 1651 0 2291 172 78 2 chr6 57114334 57114730 -132164824 + MSTA LTR MaLR 3 428 0 1387 207 18 35 chr6 57114737 57115071 -132164483 - L1ME2 LINE L1 -461 5703 5379 455 250 162 47 chr6 57115106 57115254 -132164300 + MER5A DNA MER1_type 10 174 -15 400 316 88 12 chr6 57116314 57116485 -132163069 + MIR SINE MIR 7 190 -72 2436 125 8 0 chr6 57116510 57116878 -132162676 + L1MA8 LINE L1 5443 5813 -478 1357 188 12 20 chr6 57116881 57117126 -132162428 - AluJb SINE Alu -69 243 1 2804 151 16 16 chr6 57117126 57117422 -132162132 + L1MA8 LINE L1 5802 6100 -191 2277 179 25 3 chr6 57117422 57117814 -132161740 - MER57A LTR ERV1 0 403 3 2804 151 16 16 chr6 57117814 57118001 -132161553 + L1MA8 LINE L1 6099 6285 -6 323 309 8 40 chr6 57119177 57119303 -132160251 - MIR SINE MIR -111 151 30 245 242 313 0 chr6 57119997 57120096 -132159458 + L1ME4a LINE L1 5991 6120 -1 306 0 0 0 chr6 57120384 57120418 -132159136 + (CA)n Simple_repeat Simple_repeat 1 34 0 26289 41 9 0 chr6 57122190 57125344 -132154210 + L1P LINE L1 9 3190 -2956 388 321 15 23 chr6 57125404 57125535 -132154019 - L2 LINE L2 0 3313 3184 977 269 33 81 chr6 57125558 57126184 -132153370 - L2 LINE L2 -4 3309 2709 325 0 44 0 chr6 57126184 57126229 -132153325 + (CATA)n Simple_repeat Simple_repeat 1 47 0 318 257 92 37 chr6 57126247 57126356 -132153198 + MIR SINE MIR 25 139 -69 1288 198 137 6 chr6 57126407 57126736 -132152818 - Charlie1 DNA MER1_type -2 2759 2388 596 143 0 0 chr6 57126742 57126846 -132152708 - AluSg/x SINE Alu 0 305 202 1759 236 116 8 chr6 57126847 57127346 -132152208 - Charlie1a DNA MER1_type -902 553 1 721 229 27 16 chr6 57127528 57127711 -132151843 + LTR41 LTR ERVL 1 185 -588 390 257 18 9 chr6 57128152 57128261 -132151293 + LTR41 LTR ERVL 658 767 -6 466 311 46 13 chr6 57128515 57128666 -132150888 - MIR3 SINE MIR -23 185 30 246 196 43 0 chr6 57129180 57129226 -132150328 - MLT2D LTR ERVL 0 464 417 312 137 0 0 chr6 57129252 57129303 -132150251 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 57 0 0 chr6 57129344 57129379 -132150175 + AT_rich Low_complexity Low_complexity 1 35 0 245 146 21 0 chr6 57129379 57129427 -132150127 + (TA)n Simple_repeat Simple_repeat 2 50 0 1845 171 73 46 chr6 57129431 57129799 -132149755 - MLT2D LTR ERVL -36 378 1 770 213 100 0 chr6 57130515 57130675 -132148879 + MER45A DNA AcHobo 3 178 0 212 192 0 58 chr6 57130861 57130913 -132148641 + A-rich Low_complexity Low_complexity 2 50 0 1894 245 80 35 chr6 57131516 57132051 -132147503 + MLT1G1 LTR MaLR 21 579 -16 317 350 16 38 chr6 57133487 57133670 -132145884 + MER5A DNA MER1_type 11 189 0 183 228 0 141 chr6 57133699 57133791 -132145763 + MER5A DNA MER1_type 36 114 -75 242 319 80 58 chr6 57134451 57134777 -132144777 - L2 LINE L2 -20 3252 2920 2569 167 21 5 chr6 57134791 57135210 -132144344 - MSTB LTR MaLR 0 426 1 451 328 8 0 chr6 57136098 57136229 -132143325 + MIR3 SINE MIR 40 171 -37 224 333 0 0 chr6 57136326 57136401 -132143153 + L2 LINE L2 3197 3271 -1 231 304 80 48 chr6 57136673 57136798 -132142756 - MIR3 SINE MIR -49 159 31 207 0 0 0 chr6 57137005 57137028 -132142526 + (T)n Simple_repeat Simple_repeat 1 23 0 215 268 61 0 chr6 57137150 57137232 -132142322 + MIR SINE MIR 159 245 -17 378 285 126 13 chr6 57137943 57138094 -132141460 + MIR3 SINE MIR 34 201 -7 21 0 0 0 chr6 57138577 57138598 -132140956 + AT_rich Low_complexity Low_complexity 1 21 0 192 161 25 136 chr6 57139458 57139539 -132140015 + MIR SINE MIR 117 188 -74 526 195 181 7 chr6 57139784 57139933 -132139621 + MER5A DNA MER1_type 9 183 -6 219 36 0 0 chr6 57140089 57140117 -132139437 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 208 135 0 0 chr6 57140692 57140729 -132138825 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 271 264 87 77 chr6 57140819 57140865 -132138689 + L1MC4a LINE L1 5716 5760 -2048 2278 84 25 0 chr6 57140865 57141150 -132138404 + AluSc SINE Alu 1 292 -17 271 264 87 77 chr6 57141150 57141311 -132138243 + L1MC4a LINE L1 5760 5925 -1883 234 0 0 0 chr6 57141706 57141732 -132137822 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 501 17 0 0 chr6 57141731 57141789 -132137765 + (GA)n Simple_repeat Simple_repeat 2 59 0 1059 192 104 62 chr6 57141919 57142227 -132137327 - MER46C DNA MER2_type -16 322 2 444 234 75 9 chr6 57143573 57143680 -132135874 + MER81 DNA DNA 1 114 0 400 40 0 0 chr6 57143750 57143800 -132135754 + MADE1 DNA Mariner 3 52 -28 35 24 0 0 chr6 57144288 57144330 -132135224 + AT_rich Low_complexity Low_complexity 1 42 0 242 288 68 0 chr6 57145052 57145125 -132134429 - L2 LINE L2 0 3313 3236 408 257 128 11 chr6 57145233 57145412 -132134142 + MIR SINE MIR 49 248 -14 619 195 235 0 chr6 57145698 57145847 -132133707 - MER5A DNA MER1_type 0 189 6 2118 115 30 0 chr6 57145883 57146178 -132133376 + AluSq SINE Alu 1 304 -9 288 331 57 45 chr6 57146270 57146427 -132133127 + MIR SINE MIR 25 183 -79 2162 190 12 43 chr6 57146985 57147496 -132132058 - L1P LINE L1 -889 5257 4763 1814 130 3 3 chr6 57147501 57147786 -132131768 + L1PA16 LINE L1 5875 6159 -7 302 230 35 0 chr6 57147823 57147910 -132131644 + L1ME4a LINE L1 5831 5920 -201 1911 166 7 0 chr6 57148170 57148477 -132131077 - AluJb SINE Alu -3 309 1 2062 125 26 3 chr6 57148931 57149234 -132130320 + AluSx SINE Alu 1 310 -2 1985 175 30 3 chr6 57149588 57149926 -132129628 - MER7A DNA MER2_type 0 346 2 596 256 16 16 chr6 57151049 57151240 -132128314 + L2 LINE L2 3118 3308 -5 193 234 16 122 chr6 57151601 57151770 -132127784 + MIR3 SINE MIR 53 161 -47 249 259 12 0 chr6 57152420 57152501 -132127053 - L2 LINE L2 -428 2885 2804 443 268 186 5 chr6 57152729 57152949 -132126605 + LTR33 LTR ERVL 1 260 -261 2631 90 31 6 chr6 57153052 57153407 -132126147 + THE1B LTR MaLR 1 364 0 373 228 0 13 chr6 57153548 57153627 -132125927 + MIR SINE MIR 24 101 -107 1445 204 26 80 chr6 57154737 57155124 -132124430 - MLT1A2 LTR MaLR -1 373 8 2606 195 14 0 chr6 57155131 57155567 -132123987 - MLT1A2-int LTR MaLR 0 1735 1294 743 194 146 6 chr6 57155574 57155739 -132123815 - MLT2B1 LTR ERVL -332 188 1 216 289 0 0 chr6 57155739 57155791 -132123763 - L3 LINE CR1 -28 1549 1498 21 36 0 0 chr6 57157329 57157357 -132122197 + AT_rich Low_complexity Low_complexity 1 28 0 320 265 60 40 chr6 57158046 57158197 -132121357 + MIR SINE MIR 38 191 -71 1758 229 82 64 chr6 57158246 57158828 -132120726 + MLT1E LTR MaLR 1 593 0 24 0 0 0 chr6 57159621 57159645 -132119909 + AT_rich Low_complexity Low_complexity 1 24 0 670 194 103 86 chr6 57159879 57160111 -132119443 - MER106B DNA MER1_type 0 1059 1 230 234 0 0 chr6 57160111 57160158 -132119396 + (TG)n Simple_repeat Simple_repeat 1 47 0 469 340 20 33 chr6 57161037 57161281 -132118273 - L3 LINE CR1 -65 1512 1272 2913 88 0 8 chr6 57161452 57161840 -132117714 + L1PA8A LINE L1 5746 6130 -1 632 227 91 0 chr6 57162365 57162541 -132117013 + MIR SINE MIR 71 262 0 2937 74 17 10 chr6 57162942 57163345 -132116209 + L1PA10 LINE L1 5760 6165 -3 229 267 17 0 chr6 57163366 57163426 -132116128 - LTR67 LTR ERVL -8 549 489 3409 15 0 0 chr6 57163442 57163835 -132115719 - L1PA2 LINE L1 -880 5266 4874 7861 20 0 0 chr6 57163835 57164726 -132114828 + L1PA2 LINE L1 5265 6155 0 883 268 0 0 chr6 57166048 57166227 -132113327 + MER58A DNA MER1_type 44 222 -2 392 213 32 21 chr6 57166338 57166432 -132113122 - MIR3 SINE MIR 0 208 114 257 246 36 27 chr6 57166645 57166714 -132112840 + (TATATG)n Simple_repeat Simple_repeat 5 77 -38 2310 139 17 86 chr6 57166714 57166941 -132112613 + Tigger2a DNA MER2_type 1 181 -2527 2894 6 0 16 chr6 57166941 57167258 -132112296 - AluYb8 SINE Alu -6 312 1 2310 139 17 86 chr6 57167258 57167496 -132112058 + Tigger2a DNA MER2_type 181 434 0 257 246 36 27 chr6 57167496 57167536 -132112018 + (TATATG)n Simple_repeat Simple_repeat 77 115 0 2075 98 76 25 chr6 57167728 57168085 -132111469 - THE1C LTR MaLR 0 375 1 232 233 99 0 chr6 57168947 57169041 -132110513 + MIR SINE MIR 57 141 -67 390 300 40 20 chr6 57170203 57170353 -132109201 + MIR SINE MIR 21 173 -89 188 86 29 0 chr6 57170628 57170663 -132108891 + (CAA)n Simple_repeat Simple_repeat 1 36 0 300 323 110 24 chr6 57170898 57171062 -132108492 - MER5A DNA MER1_type 0 189 1 653 290 130 0 chr6 57171479 57171741 -132107813 + MLT1J2 LTR MaLR 4 299 -151 1938 167 39 22 chr6 57172817 57173176 -132106378 + MLT1A1 LTR MaLR 1 365 0 1086 122 0 0 chr6 57173189 57173369 -132106185 + (TA)n Simple_repeat Simple_repeat 1 180 0 2127 118 0 4 chr6 57173372 57173652 -132105902 - AluSg SINE Alu -31 279 1 2013 132 16 3 chr6 57173876 57174180 -132105374 - AluSc SINE Alu -1 308 1 365 216 26 78 chr6 57174576 57174692 -132104862 + MER69A DNA AcHobo 1 110 -67 222 302 32 0 chr6 57174928 57174991 -132104563 + L3b LINE CR1 1517 1581 -2 229 224 0 0 chr6 57175077 57175126 -132104428 + T-rich Low_complexity Low_complexity 1 49 0 582 158 25 17 chr6 57175126 57175246 -132104308 - L1MA4A LINE L1 0 6303 6183 186 210 12 86 chr6 57175733 57175814 -132103740 + L2 LINE L2 3224 3298 -15 390 250 8 25 chr6 57176152 57176272 -132103282 + MER5B DNA MER1_type 1 118 -60 514 288 17 11 chr6 57178599 57178776 -132100778 - MER5B DNA MER1_type 0 178 1 340 299 20 80 chr6 57179217 57179286 -132100268 - MIR SINE MIR -50 212 140 625 231 0 8 chr6 57179286 57179420 -132100134 - MER94 DNA DNA -1 133 1 340 299 20 80 chr6 57179420 57179551 -132100003 - MIR SINE MIR -122 140 24 511 184 0 34 chr6 57183297 57183444 -132096110 + GA-rich Low_complexity Low_complexity 6 147 0 260 235 24 24 chr6 57183713 57183798 -132095756 + T-rich Low_complexity Low_complexity 5 89 0 1178 220 163 52 chr6 57183803 57184362 -132095192 - L1ME3 LINE L1 -2 6160 5540 664 274 113 14 chr6 57184542 57184754 -132094800 - MIR SINE MIR -21 241 9 593 189 9 0 chr6 57185953 57186059 -132093495 + U6 snRNA snRNA 1 107 0 4408 246 32 46 chr6 57186062 57186613 -132092941 + L1ME1 LINE L1 1860 2417 -3798 2904 13 0 0 chr6 57186613 57186925 -132092629 + AluYb8 SINE Alu 1 312 -6 4408 246 32 46 chr6 57186925 57188253 -132091301 + L1ME1 LINE L1 2417 3687 -2528 3243 224 49 26 chr6 57188261 57189136 -132090418 + L1ME1 LINE L1 5323 6217 -18 228 273 0 0 chr6 57189969 57190024 -132089530 - L2 LINE L2 0 3313 3259 698 279 71 20 chr6 57190431 57190628 -132088926 - MIR SINE MIR 0 262 56 941 290 65 24 chr6 57191490 57191904 -132087650 + MLT1K LTR MaLR 136 566 -22 311 273 139 48 chr6 57192273 57192482 -132087072 + MIR SINE MIR 5 232 -30 444 275 90 35 chr6 57192526 57192726 -132086828 - MIR SINE MIR -38 224 14 1839 140 187 11 chr6 57192902 57193266 -132086288 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr6 57193409 57193430 -132086124 + AT_rich Low_complexity Low_complexity 1 21 0 445 270 35 9 chr6 57193851 57193966 -132085588 - L2 LINE L2 -1 3271 3154 731 325 57 28 chr6 57194221 57194609 -132084945 - L2 LINE L2 -18 3295 2897 2774 134 16 22 chr6 57195851 57196345 -132083209 - L1MC1 LINE L1 -8 6325 5835 354 241 48 0 chr6 57196346 57196429 -132083125 + L2 LINE L2 3224 3310 -3 474 193 29 77 chr6 57196556 57196734 -132082820 - MIR SINE MIR -62 146 17 348 343 111 55 chr6 57197265 57197760 -132081794 + L2 LINE L2 2230 2752 -562 221 264 28 42 chr6 57198195 57198267 -132081287 + L2 LINE L2 3169 3239 -33 190 246 0 18 chr6 57198296 57198353 -132081201 - L2 LINE L2 0 3313 3258 385 287 167 19 chr6 57198573 57198789 -132080765 + L1ME4a LINE L1 5325 5572 -2236 300 260 137 20 chr6 57198885 57199089 -132080465 + L1ME4a LINE L1 5737 5964 -157 357 213 28 0 chr6 57199089 57199197 -132080357 + (TA)n Simple_repeat Simple_repeat 2 112 0 1999 137 153 5 chr6 57199233 57199606 -132079948 - MSTA LTR MaLR 0 428 1 287 250 106 29 chr6 57200083 57200187 -132079367 + MER5A DNA MER1_type 21 132 -57 2439 88 0 0 chr6 57200190 57200495 -132079059 - AluSg SINE Alu -5 305 1 592 245 88 13 chr6 57201362 57201521 -132078033 - MER5B DNA MER1_type 0 178 8 936 174 0 30 chr6 57201668 57201835 -132077719 + FRAM SINE Alu 5 166 0 367 225 174 36 chr6 57202113 57202251 -132077303 + MIR SINE MIR 75 231 -31 248 372 21 0 chr6 57202333 57202427 -132077127 - MIR SINE MIR -76 132 37 2327 100 0 7 chr6 57202944 57203253 -132076301 - AluSc SINE Alu -2 307 1 192 226 109 109 chr6 57203485 57203515 -132076039 + L2 LINE L2 3136 3165 -107 2460 63 0 3 chr6 57203515 57203818 -132075736 - AluY SINE Alu -9 302 1 192 226 109 109 chr6 57203818 57203924 -132075630 + L2 LINE L2 3164 3272 0 251 266 0 0 chr6 57204591 57204655 -132074899 + (TGAA)n Simple_repeat Simple_repeat 3 66 0 218 267 160 61 chr6 57204828 57204959 -132074595 - MIR SINE MIR -30 232 89 24 0 0 0 chr6 57206693 57206717 -132072837 + AT_rich Low_complexity Low_complexity 1 24 0 208 146 0 55 chr6 57206721 57206776 -132072778 + (TAAAA)n Simple_repeat Simple_repeat 2 53 0 225 280 0 0 chr6 57207021 57207096 -132072458 + L1ME LINE L1 5357 5431 -928 517 322 70 9 chr6 57207129 57207356 -132072198 + MIR SINE MIR 1 241 -21 215 222 0 14 chr6 57207376 57207448 -132072106 + (ATGGTG)n Simple_repeat Simple_repeat 2 72 0 428 331 0 22 chr6 57207524 57207702 -132071852 + (TGG)n Simple_repeat Simple_repeat 1 174 0 313 234 5 27 chr6 57207707 57207891 -132071663 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 265 262 172 47 chr6 57208083 57208316 -132071238 + L1ME LINE L1 5561 5822 -299 526 320 22 0 chr6 57208916 57209094 -132070460 + MIR SINE MIR 79 260 -2 209 316 0 18 chr6 57209200 57209257 -132070297 + MIR3 SINE MIR 114 169 -39 26 30 0 0 chr6 57209376 57209409 -132070145 + AT_rich Low_complexity Low_complexity 1 33 0 315 288 20 57 chr6 57209967 57210106 -132069448 - MIR SINE MIR -72 136 9 581 338 54 0 chr6 57210391 57210595 -132068959 - MIR SINE MIR -1 261 47 40 49 0 0 chr6 57212931 57212992 -132066562 + AT_rich Low_complexity Low_complexity 1 61 0 215 230 138 58 chr6 57213407 57213494 -132066060 + MIR3 SINE MIR 100 193 -15 3973 242 68 15 chr6 57214157 57215214 -132064340 + MER69B DNA AcHobo 9 1135 -1391 2194 128 0 0 chr6 57215214 57215511 -132064043 - AluSx SINE Alu -15 297 1 3973 242 68 15 chr6 57215511 57215609 -132063945 + MER69B DNA AcHobo 1135 1226 0 182 293 52 17 chr6 57216742 57216800 -132062754 + MIR SINE MIR 3 62 -200 460 203 86 0 chr6 57217054 57217182 -132062372 + MER103 DNA DNA 22 160 -6 294 29 0 0 chr6 57218051 57218086 -132061468 + (TG)n Simple_repeat Simple_repeat 1 35 0 465 195 0 0 chr6 57218127 57218204 -132061350 - FLAM_A SINE Alu -59 83 7 189 299 168 9 chr6 57218367 57218474 -132061080 + L2 LINE L2 3182 3305 -8 428 261 109 14 chr6 57218485 57218623 -132060931 + MIR3 SINE MIR 31 181 -27 343 298 75 25 chr6 57218946 57219107 -132060447 - MIR SINE MIR -60 202 34 340 188 67 81 chr6 57219360 57219509 -132060045 - MER103 DNA DNA -7 159 13 387 251 68 30 chr6 57220148 57220383 -132059171 + HAL1 LINE L1 1017 1260 -1247 1103 235 33 55 chr6 57221758 57222124 -132057430 + MLT1A2 LTR MaLR 4 361 -13 2003 131 0 0 chr6 57222301 57222611 -132056943 - AluSq SINE Alu 0 310 1 1116 59 0 0 chr6 57222611 57222746 -132056808 - AluSq/x SINE Alu -178 135 1 346 252 53 122 chr6 57222921 57223052 -132056502 - MIR SINE MIR -14 248 138 1288 170 18 11 chr6 57223052 57223328 -132056226 + L1MB3 LINE L1 5905 6182 -1 346 252 53 122 chr6 57223328 57223425 -132056129 - MIR SINE MIR -124 138 36 270 251 58 146 chr6 57223558 57223704 -132055850 - MER91A DNA MER1_type -39 157 27 770 223 64 35 chr6 57223704 57223906 -132055648 - MER63A DNA MER1_type -1 209 2 270 251 58 146 chr6 57223906 57223930 -132055624 - MER91A DNA MER1_type -169 27 2 276 296 98 85 chr6 57224184 57224359 -132055195 + L2 LINE L2 2489 2671 -643 2687 90 3 0 chr6 57224359 57224713 -132054841 + THE1A LTR MaLR 1 355 0 276 296 98 85 chr6 57224713 57224854 -132054700 + L2 LINE L2 2671 2809 -505 225 65 0 0 chr6 57225278 57225309 -132054245 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 382 0 0 chr6 57225353 57225408 -132054146 + L2 LINE L2 3229 3283 -30 360 376 49 6 chr6 57225538 57225700 -132053854 - MIR SINE MIR -74 188 20 240 289 31 31 chr6 57226256 57226384 -132053170 + LTR67 LTR ERVL 413 540 -17 312 319 80 7 chr6 57226832 57226997 -132052557 - MIR SINE MIR -61 147 3 966 184 0 5 chr6 57227056 57227262 -132052292 - L1 LINE L1 -1027 5119 4915 27 0 0 0 chr6 57227262 57227289 -132052265 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr6 57227503 57227527 -132052027 + AT_rich Low_complexity Low_complexity 1 24 0 515 257 66 3 chr6 57227653 57227840 -132051714 - MIR SINE MIR -8 254 4 1957 121 0 11 chr6 57228378 57228699 -132050855 - AluSc SINE Alu 0 318 1 972 198 56 0 chr6 57229175 57229372 -132050182 + MER3 DNA MER1_type 2 209 0 301 223 48 19 chr6 57230515 57230618 -132048936 + L1ME1 LINE L1 37 142 -6254 2024 256 22 38 chr6 57230636 57231369 -132048185 + L1ME1 LINE L1 263 983 -5413 826 264 106 7 chr6 57231344 57231749 -132047805 + L1ME1 LINE L1 3398 3842 -2373 * 382 286 20 0 chr6 57231801 57231948 -132047606 + L1ME1 LINE L1 3807 3956 -2259 2612 225 67 27 chr6 57231974 57233134 -132046420 + L1ME1 LINE L1 5024 6228 -7 751 296 81 53 chr6 57233774 57234237 -132045317 - L2 LINE L2 -10 3262 2796 1133 224 68 51 chr6 57235103 57235540 -132044014 + MLT1C LTR MaLR 11 467 0 239 304 172 54 chr6 57235710 57235773 -132043781 - L2 LINE L2 -97 3175 3121 2384 126 23 23 chr6 57235773 57236163 -132043391 + MLT1B LTR MaLR 1 390 0 239 304 172 54 chr6 57236163 57236534 -132043020 - L2 LINE L2 -151 3121 2691 11188 161 19 26 chr6 57236539 57239460 -132040094 + L1PA13 LINE L1 3260 6163 0 288 226 0 0 chr6 57241734 57241796 -132037758 - MER91B DNA MER1_type -127 63 2 599 293 80 0 chr6 57242279 57242491 -132037063 - MIR SINE MIR -13 249 21 1670 192 24 0 chr6 57242494 57242611 -132036943 + AluJo SINE Alu 1 114 -198 225 0 0 0 chr6 57242611 57242636 -132036918 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1670 192 24 0 chr6 57242636 57242815 -132036739 + AluJo SINE Alu 114 304 -8 536 262 158 32 chr6 57243074 57243479 -132036075 + L2 LINE L2 2436 2891 -423 2136 200 75 2 chr6 57243504 57243955 -132035599 + MLT1D LTR MaLR 22 505 0 346 222 29 117 chr6 57243959 57244064 -132035490 + L2 LINE L2 3115 3201 -112 1545 105 186 8 chr6 57244064 57244311 -132035243 + AluSc SINE Alu 1 291 -18 346 222 29 117 chr6 57244311 57244376 -132035178 + L2 LINE L2 3201 3270 -43 2241 130 0 0 chr6 57245286 57245587 -132033967 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr6 57246144 57246165 -132033389 + AT_rich Low_complexity Low_complexity 1 21 0 375 329 42 12 chr6 57248892 57249059 -132030495 - MIR3 SINE MIR -21 187 16 385 204 136 140 chr6 57249079 57249314 -132030240 - MER106A DNA MER1_type 0 236 3 846 262 42 70 chr6 57249587 57250230 -132029324 + L2 LINE L2 2695 3309 -4 353 321 15 23 chr6 57250253 57250384 -132029170 + L2 LINE L2 3184 3313 0 12766 30 1 0 chr6 57250444 57251966 -132027588 - L1P LINE L1 -2956 3190 1667 325 196 11 11 chr6 57252101 57252193 -132027361 + CT-rich Low_complexity Low_complexity 3 94 0 12565 188 19 63 chr6 57252209 57253896 -132025658 - L1PA16 LINE L1 -31 6135 4376 189 0 0 0 chr6 57253896 57253917 -132025637 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 12565 188 19 63 chr6 57253917 57254010 -132025544 - L1PA16 LINE L1 -1790 4376 4280 2430 84 3 0 chr6 57254010 57254307 -132025247 - AluSp SINE Alu -15 298 1 12565 188 19 63 chr6 57254307 57257279 -132022275 - L1PA16 LINE L1 -1886 4280 1596 492 268 57 0 chr6 57257680 57257837 -132021717 - MIR SINE MIR -1 261 96 783 198 212 20 chr6 57258123 57258723 -132020831 + LTR50 LTR ERVL 1 760 -35 215 149 0 21 chr6 57259945 57259992 -132019562 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 346 368 0 0 chr6 57259995 57260112 -132019442 - MIR3 SINE MIR -52 156 40 182 237 0 0 chr6 57260587 57260625 -132018929 - L2 LINE L2 -6 3307 3270 508 318 129 7 chr6 57260783 57261085 -132018469 + L3 LINE CR1 1227 1565 -12 330 303 181 5 chr6 57261406 57261594 -132017960 - MIR SINE MIR -41 221 1 1818 98 0 0 chr6 57262118 57262343 -132017211 + AluSc SINE Alu 3 227 -82 2186 110 0 0 chr6 57262360 57262673 -132016881 - AluSc SINE Alu 0 313 1 335 235 0 87 chr6 57264453 57264568 -132014986 + MER69A DNA AcHobo 5 109 -68 425 305 48 16 chr6 57264606 57264793 -132014761 + MIR SINE MIR 67 259 -3 225 227 144 21 chr6 57266295 57266392 -132013162 - MIR SINE MIR -72 190 82 216 261 0 58 chr6 57269590 57269659 -132009895 + L3 LINE CR1 1489 1553 -24 414 85 0 0 chr6 57270245 57270304 -132009250 + (GA)n Simple_repeat Simple_repeat 2 60 0 180 0 0 0 chr6 57270434 57270454 -132009100 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 697 248 78 0 chr6 57271271 57271477 -132008077 + MIR SINE MIR 17 238 -24 415 299 115 47 chr6 57272251 57272572 -132006982 + MLT1J LTR MaLR 100 442 -69 2334 101 0 3 chr6 57272763 57273061 -132006493 - AluSg SINE Alu -13 297 1 194 220 0 20 chr6 57273082 57273132 -132006422 + L2 LINE L2 3263 3311 -2 345 197 0 0 chr6 57273619 57273690 -132005864 + (CATATA)n Simple_repeat Simple_repeat 6 76 0 2379 80 0 29 chr6 57273690 57274002 -132005552 - AluY SINE Alu -8 303 1 300 300 18 18 chr6 57274616 57274726 -132004828 - L2 LINE L2 -1 3271 3162 197 263 237 0 chr6 57274743 57274819 -132004735 + MER5A DNA MER1_type 4 97 -92 3276 105 71 8 chr6 57274848 57275352 -132004202 + MER34B LTR ERV1 1 536 -29 252 0 0 0 chr6 57276214 57276242 -132003312 + (TG)n Simple_repeat Simple_repeat 2 29 0 207 100 0 0 chr6 57278163 57278193 -132001361 + (CAG)n Simple_repeat Simple_repeat 2 31 0 562 255 7 13 chr6 57278200 57278353 -132001201 - MIR SINE MIR -16 246 95 1610 222 9 20 chr6 57278380 57278723 -132000831 + MER58B DNA MER1_type 3 341 0 530 141 27 141 chr6 57278963 57279101 -132000453 + MER104 DNA Tc2 4 119 -1779 2057 126 3 7 chr6 57279101 57279406 -132000148 - AluSx SINE Alu 0 304 1 530 141 27 141 chr6 57279406 57279451 -132000103 + MER104 DNA Tc2 119 167 -13 187 303 76 59 chr6 57279472 57279555 -131999999 - L3 LINE CR1 -105 1472 1385 2175 117 3 0 chr6 57279555 57279853 -131999701 - AluSc SINE Alu -10 299 1 187 303 76 59 chr6 57279853 57279888 -131999666 - L3 LINE CR1 -192 1385 1352 2338 104 0 0 chr6 57283643 57283951 -131995603 - AluSp SINE Alu -5 308 1 484 233 27 67 chr6 57283997 57284147 -131995407 - MIR SINE MIR -92 170 27 229 243 96 66 chr6 57284739 57284875 -131994679 - MIR SINE MIR -3 259 120 328 242 77 0 chr6 57284884 57284975 -131994579 - MIR SINE MIR -119 143 46 313 269 56 9 chr6 57285004 57285112 -131994442 + L2 LINE L2 3144 3256 -16 209 209 0 0 chr6 57285152 57285195 -131994359 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 1161 175 180 70 chr6 57286433 57286664 -131992890 - MLT1C LTR MaLR -2 465 261 1655 147 114 0 chr6 57286664 57286937 -131992617 - AluSx SINE Alu -8 304 1 1161 175 180 70 chr6 57286937 57287077 -131992477 - MLT1C LTR MaLR -206 261 53 1173 203 0 47 chr6 57287097 57287329 -131992225 - AluJo SINE Alu -22 290 70 880 186 44 20 chr6 57290463 57290667 -131988887 - MIR SINE MIR -17 245 37 1347 194 92 6 chr6 57291578 57291892 -131987662 + MER58B DNA MER1_type 1 341 0 225 0 0 0 chr6 57291996 57292021 -131987533 + (A)n Simple_repeat Simple_repeat 1 25 0 251 302 144 14 chr6 57292624 57292763 -131986791 - MIR SINE MIR -12 250 94 321 282 21 70 chr6 57292808 57292950 -131986604 + MLT1J2 LTR MaLR 72 206 -244 336 239 43 24 chr6 57292984 57293107 -131986447 + MLT1I LTR MaLR 309 438 -12 186 274 0 16 chr6 57293114 57293176 -131986378 - MIR SINE MIR -201 61 1 417 320 29 17 chr6 57293467 57293639 -131985915 - MIR3 SINE MIR -3 205 32 217 266 75 0 chr6 57294833 57294927 -131984627 - MIR SINE MIR -72 136 36 475 279 108 10 chr6 57295430 57295634 -131983920 + MIR SINE MIR 32 255 -7 204 274 0 0 chr6 57297640 57297691 -131981863 + L2 LINE L2 3251 3301 -12 1791 148 0 33 chr6 57297734 57298039 -131981515 + AluJo SINE Alu 10 304 -8 231 36 0 0 chr6 57299563 57299591 -131979963 + (TGG)n Simple_repeat Simple_repeat 3 30 0 474 296 71 31 chr6 57299844 57300040 -131979514 - MIR SINE MIR 0 262 59 2415 104 0 0 chr6 57301440 57301747 -131977807 + AluSg1 SINE Alu 1 307 -2 240 330 23 35 chr6 57302309 57302482 -131977072 + MLT1J LTR MaLR 6 176 -335 233 146 21 21 chr6 57302857 57302905 -131976649 + L2 LINE L2 3258 3305 -8 441 322 50 37 chr6 57302937 57303179 -131976375 - L3 LINE CR1 -1 1576 1332 185 277 0 0 chr6 57303346 57303393 -131976161 - L2 LINE L2 -5 3308 3262 21 57 0 0 chr6 57304673 57304708 -131974846 + AT_rich Low_complexity Low_complexity 1 35 0 660 244 75 19 chr6 57304713 57304926 -131974628 - MIR SINE MIR -29 233 9 1537 193 155 13 chr6 57305435 57305843 -131973711 + MLT1C LTR MaLR 1 505 0 486 0 0 0 chr6 57305868 57305922 -131973632 + (TA)n Simple_repeat Simple_repeat 1 54 0 403 18 36 0 chr6 57306395 57306451 -131973103 + (CATA)n Simple_repeat Simple_repeat 2 59 0 291 268 41 41 chr6 57306481 57306578 -131972976 + MIR SINE MIR 43 139 -69 1268 194 137 6 chr6 57306629 57306958 -131972596 - Charlie1 DNA MER1_type -2 2759 2388 593 163 0 0 chr6 57306964 57307089 -131972465 - AluSg/x SINE Alu 0 320 196 1753 234 116 8 chr6 57307092 57307583 -131971971 - Charlie1a DNA MER1_type -911 544 1 721 229 27 16 chr6 57307765 57307948 -131971606 + LTR41 LTR ERVL 1 185 -588 385 257 18 9 chr6 57308389 57308498 -131971056 + LTR41 LTR ERVL 658 767 -6 418 311 46 13 chr6 57308752 57308903 -131970651 - MIR3 SINE MIR -23 185 30 245 196 43 0 chr6 57309417 57309463 -131970091 - MLT2D LTR ERVL 0 464 417 312 137 0 0 chr6 57309489 57309540 -131970014 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 57 0 0 chr6 57309581 57309616 -131969938 + AT_rich Low_complexity Low_complexity 1 35 0 245 146 21 0 chr6 57309616 57309664 -131969890 + (TA)n Simple_repeat Simple_repeat 2 50 0 1862 172 74 41 chr6 57309668 57310034 -131969520 - MLT2D LTR ERVL -36 378 1 719 213 100 0 chr6 57310750 57310910 -131968644 + MER45A DNA AcHobo 3 178 0 212 192 0 58 chr6 57311096 57311148 -131968406 + A-rich Low_complexity Low_complexity 2 50 0 1893 245 80 35 chr6 57311751 57312286 -131967268 + MLT1G1 LTR MaLR 21 579 -16 524 216 22 65 chr6 57313766 57313905 -131965649 - MER5B DNA MER1_type -45 133 1 2397 169 21 5 chr6 57315026 57315445 -131964109 - MSTB LTR MaLR 0 426 1 411 328 8 0 chr6 57316333 57316464 -131963090 + MIR3 SINE MIR 40 171 -37 205 333 0 0 chr6 57316561 57316636 -131962918 + L2 LINE L2 3197 3271 -1 208 268 113 14 chr6 57316908 57316979 -131962575 - MIR3 SINE MIR -49 159 82 207 0 0 0 chr6 57317240 57317263 -131962291 + (T)n Simple_repeat Simple_repeat 1 23 0 196 268 61 0 chr6 57317385 57317467 -131962087 + MIR SINE MIR 159 245 -17 332 285 126 13 chr6 57318178 57318329 -131961225 + MIR3 SINE MIR 34 201 -7 21 0 0 0 chr6 57318812 57318833 -131960721 + AT_rich Low_complexity Low_complexity 1 21 0 192 161 25 136 chr6 57319693 57319774 -131959780 + MIR SINE MIR 117 188 -74 526 195 181 7 chr6 57320019 57320168 -131959386 + MER5A DNA MER1_type 9 183 -6 219 36 0 0 chr6 57320324 57320352 -131959202 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 208 135 0 0 chr6 57320927 57320964 -131958590 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 271 264 87 77 chr6 57321054 57321100 -131958454 + L1MC4a LINE L1 5716 5760 -2048 2250 88 25 0 chr6 57321100 57321385 -131958169 + AluSc SINE Alu 1 292 -17 271 264 87 77 chr6 57321385 57321546 -131958008 + L1MC4a LINE L1 5760 5925 -1883 234 0 0 0 chr6 57321941 57321967 -131957587 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 501 17 0 0 chr6 57321966 57322024 -131957530 + (GA)n Simple_repeat Simple_repeat 2 59 0 1059 192 104 62 chr6 57322154 57322462 -131957092 - MER46C DNA MER2_type -16 322 2 444 234 75 9 chr6 57323808 57323915 -131955639 + MER81 DNA DNA 1 114 0 400 40 0 0 chr6 57323985 57324035 -131955519 + MADE1 DNA Mariner 3 52 -28 35 24 0 0 chr6 57324523 57324565 -131954989 + AT_rich Low_complexity Low_complexity 1 42 0 242 288 68 0 chr6 57325287 57325360 -131954194 - L2 LINE L2 0 3313 3236 408 257 128 11 chr6 57325468 57325647 -131953907 + MIR SINE MIR 49 248 -14 619 195 235 0 chr6 57325933 57326082 -131953472 - MER5A DNA MER1_type 0 189 6 2110 116 31 0 chr6 57326118 57326412 -131953142 + AluSq SINE Alu 1 303 -10 288 331 57 45 chr6 57326504 57326661 -131952893 + MIR SINE MIR 25 183 -79 2162 190 12 43 chr6 57327219 57327730 -131951824 - L1P LINE L1 -889 5257 4763 1814 130 3 3 chr6 57327735 57328020 -131951534 + L1PA16 LINE L1 5875 6159 -7 302 230 35 0 chr6 57328057 57328144 -131951410 + L1ME4a LINE L1 5831 5920 -201 1895 169 7 0 chr6 57328404 57328711 -131950843 - AluJb SINE Alu -3 309 1 2070 125 26 3 chr6 57329165 57329469 -131950085 + AluSx SINE Alu 1 311 -1 1985 175 30 3 chr6 57329823 57330161 -131949393 - MER7A DNA MER2_type 0 346 2 596 256 16 16 chr6 57331284 57331475 -131948079 + L2 LINE L2 3118 3308 -5 193 234 16 122 chr6 57331836 57332005 -131947549 + MIR3 SINE MIR 53 161 -47 249 241 107 59 chr6 57332549 57332736 -131946818 - L2 LINE L2 -273 2999 2804 443 268 186 5 chr6 57332964 57333184 -131946370 + LTR33 LTR ERVL 1 260 -261 2631 90 31 6 chr6 57333287 57333642 -131945912 + THE1B LTR MaLR 1 364 0 373 228 0 13 chr6 57333783 57333862 -131945692 + MIR SINE MIR 24 101 -107 1445 204 26 80 chr6 57334972 57335359 -131944195 - MLT1A2 LTR MaLR -1 373 8 2606 195 14 0 chr6 57335366 57335802 -131943752 - MLT1A2-int LTR MaLR 0 1735 1294 743 194 146 6 chr6 57335809 57335974 -131943580 - MLT2B1 LTR ERVL -332 188 1 216 289 0 0 chr6 57335974 57336026 -131943528 - L3 LINE CR1 -28 1549 1498 21 36 0 0 chr6 57337564 57337592 -131941962 + AT_rich Low_complexity Low_complexity 1 28 0 320 265 60 40 chr6 57338281 57338432 -131941122 + MIR SINE MIR 38 191 -71 1758 229 82 64 chr6 57338481 57339063 -131940491 + MLT1E LTR MaLR 1 593 0 24 0 0 0 chr6 57339856 57339880 -131939674 + AT_rich Low_complexity Low_complexity 1 24 0 670 194 103 86 chr6 57340114 57340346 -131939208 - MER106B DNA MER1_type 0 1059 1 230 234 0 0 chr6 57340346 57340393 -131939161 + (TG)n Simple_repeat Simple_repeat 1 47 0 469 340 20 33 chr6 57341272 57341516 -131938038 - L3 LINE CR1 -65 1512 1272 2914 88 0 8 chr6 57341687 57342075 -131937479 + L1PA8A LINE L1 5746 6130 -1 713 227 91 0 chr6 57342600 57342776 -131936778 + MIR SINE MIR 71 262 0 2938 74 17 10 chr6 57343177 57343580 -131935974 + L1PA10 LINE L1 5760 6165 -3 230 267 17 0 chr6 57343601 57343661 -131935893 - LTR67 LTR ERVL -8 549 489 3392 15 0 0 chr6 57343677 57344070 -131935484 - L1PA2 LINE L1 -880 5266 4874 7838 20 0 0 chr6 57344070 57344961 -131934593 + L1PA2 LINE L1 5265 6155 0 883 268 0 0 chr6 57346283 57346462 -131933092 + MER58A DNA MER1_type 44 222 -2 410 253 179 31 chr6 57346573 57346735 -131932819 - MIR3 SINE MIR 0 208 23 257 246 36 27 chr6 57346880 57346949 -131932605 + (TATATG)n Simple_repeat Simple_repeat 5 77 -38 2299 139 17 86 chr6 57346949 57347176 -131932378 + Tigger2a DNA MER2_type 1 181 -2527 2751 6 0 16 chr6 57347176 57347493 -131932061 - AluYb8 SINE Alu -6 312 1 2299 139 17 86 chr6 57347493 57347731 -131931823 + Tigger2a DNA MER2_type 181 434 0 257 246 36 27 chr6 57347731 57347771 -131931783 + (TATATG)n Simple_repeat Simple_repeat 77 115 0 2081 98 76 25 chr6 57347963 57348320 -131931234 - THE1C LTR MaLR 0 375 1 326 272 161 22 chr6 57349182 57349362 -131930192 + MIR SINE MIR 57 261 -1 465 301 75 29 chr6 57350420 57350630 -131928924 + MIR SINE MIR 3 227 -35 188 86 29 0 chr6 57350863 57350898 -131928656 + (CAA)n Simple_repeat Simple_repeat 1 36 0 345 304 101 32 chr6 57351133 57351291 -131928263 - MER5A DNA MER1_type 0 189 21 677 294 130 0 chr6 57351714 57351976 -131927578 + MLT1J2 LTR MaLR 4 299 -151 1939 167 39 22 chr6 57353052 57353411 -131926143 + MLT1A1 LTR MaLR 1 365 0 1086 122 0 0 chr6 57353426 57353606 -131925948 + (TA)n Simple_repeat Simple_repeat 1 180 0 2005 118 0 4 chr6 57353609 57353889 -131925665 - AluSg SINE Alu -31 279 1 1899 132 16 3 chr6 57354113 57354417 -131925137 - AluSc SINE Alu -1 308 1 184 266 0 101 chr6 57354666 57354745 -131924809 - MIR3 SINE MIR -3 205 135 374 216 26 78 chr6 57354813 57354929 -131924625 + MER69A DNA AcHobo 1 110 -67 246 302 32 0 chr6 57355165 57355228 -131924326 + L3b LINE CR1 1517 1581 -2 191 167 100 100 chr6 57355260 57355320 -131924234 - MIR SINE MIR -107 101 42 207 209 0 0 chr6 57355320 57355363 -131924191 + T-rich Low_complexity Low_complexity 1 43 0 575 158 25 17 chr6 57355363 57355483 -131924071 - L1MA4A LINE L1 0 6303 6183 232 200 10 130 chr6 57355970 57356070 -131923484 + L2 LINE L2 3224 3311 -2 437 263 33 30 chr6 57356389 57356568 -131922986 + MER5B DNA MER1_type 1 187 -2 520 288 17 11 chr6 57358836 57359013 -131920541 - MER5B DNA MER1_type 0 178 1 197 212 97 88 chr6 57359284 57359397 -131920157 - MIR SINE MIR -47 215 102 417 299 20 80 chr6 57359454 57359523 -131920031 - MIR SINE MIR -50 212 140 620 231 0 8 chr6 57359523 57359657 -131919897 - MER94 DNA DNA -1 133 1 417 299 20 80 chr6 57359657 57359788 -131919766 - MIR SINE MIR -122 140 24 204 352 49 37 chr6 57360074 57360236 -131919318 + MIR SINE MIR 20 183 -79 337 243 201 28 chr6 57413879 57414093 -131865461 - HAL1 LINE L1 -887 1620 1370 537 241 162 16 chr6 57414111 57414302 -131865252 + MER58A DNA MER1_type 1 219 -5 388 272 75 86 chr6 57414312 57414834 -131864720 - HAL1 LINE L1 -1150 1357 842 632 255 58 43 chr6 57414939 57415265 -131864289 - LTR16A LTR ERVL -30 420 90 1812 259 37 28 chr6 57415769 57416333 -131863221 + MLT1E LTR MaLR 1 571 -22 279 174 0 0 chr6 57416334 57416380 -131863174 - MLT2D LTR ERVL -2 412 367 195 162 0 0 chr6 57416380 57416417 -131863137 + (TCTG)n Simple_repeat Simple_repeat 3 39 0 1771 186 45 11 chr6 57416436 57416790 -131862764 - MLT2D LTR ERVL -48 366 1 220 260 219 0 chr6 57416885 57416958 -131862596 + MIR SINE MIR 168 256 -6 321 286 33 11 chr6 57417307 57417398 -131862156 - MIR SINE MIR -150 112 20 266 261 0 68 chr6 57418701 57418789 -131860765 - MIR SINE MIR -87 175 94 456 139 14 0 chr6 57420339 57420411 -131859143 - AluJ/FRAM SINE Alu -8 304 232 2146 120 0 29 chr6 57421176 57421485 -131858069 + AluSg SINE Alu 1 300 -10 308 359 23 0 chr6 57422612 57422740 -131856814 + MER94 DNA DNA 4 134 0 21 0 0 0 chr6 57423298 57423319 -131856235 + AT_rich Low_complexity Low_complexity 1 21 0 2071 178 89 45 chr6 57423485 57423629 -131855925 - L1MC4 LINE L1 0 8042 7906 186 43 0 0 chr6 57423629 57423652 -131855902 + (CA)n Simple_repeat Simple_repeat 2 24 0 2071 178 89 45 chr6 57423652 57424058 -131855496 - L1MC4 LINE L1 -136 7906 7468 470 259 222 0 chr6 57424181 57424316 -131855238 + MER5B DNA MER1_type 1 165 -13 1171 176 48 19 chr6 57424617 57424827 -131854727 - MER20 DNA MER1_type -3 216 1 593 279 20 35 chr6 57424905 57425106 -131854448 + MIR SINE MIR 3 200 -62 253 211 135 58 chr6 57425122 57425226 -131854328 + MIR SINE MIR 151 262 0 * 411 291 7 8 chr6 57425208 57425341 -131854213 - MIR SINE MIR -64 144 32 201 94 0 0 chr6 57425728 57425760 -131853794 + (CA)n Simple_repeat Simple_repeat 1 32 0 205 264 19 0 chr6 57426099 57426152 -131853402 + (TG)n Simple_repeat Simple_repeat 1 54 0 198 306 74 28 chr6 57426773 57426881 -131852673 + L3b LINE CR1 1190 1302 -281 573 281 30 55 chr6 57426963 57427162 -131852392 - MIR SINE MIR -2 260 67 298 244 12 12 chr6 57427242 57427324 -131852230 + L2 LINE L2 3188 3269 -44 439 88 0 23 chr6 57427514 57427759 -131851795 + AluY SINE Alu 1 311 0 192 273 159 34 chr6 57428145 57428233 -131851321 - MIR3 SINE MIR -4 204 106 1651 174 37 0 chr6 57428419 57428689 -131850865 + AluJo SINE Alu 3 282 -30 246 225 211 0 chr6 57428767 57428838 -131850716 - MIR SINE MIR -88 120 35 316 241 170 43 chr6 57430493 57430634 -131848920 - MER5A DNA MER1_type -30 159 1 230 318 12 12 chr6 57430673 57430758 -131848796 - MER5A DNA MER1_type -28 161 77 442 109 0 0 chr6 57431012 57431076 -131848478 - L1PA10 LINE L1 -1 6167 6104 286 295 121 20 chr6 57431096 57431245 -131848309 + MIR SINE MIR 31 194 -68 1809 156 161 0 chr6 57431305 57431652 -131847902 + MER57A LTR ERV1 1 403 0 2440 85 0 7 chr6 57431971 57432277 -131847277 + AluSp SINE Alu 1 304 -9 180 184 184 69 chr6 57432578 57432665 -131846889 - L2 LINE L2 -5 3267 3171 282 263 11 32 chr6 57433091 57433186 -131846368 + MIR SINE MIR 119 211 -51 323 321 152 0 chr6 57434155 57434267 -131845287 + L2 LINE L2 3125 3253 -19 686 263 103 64 chr6 57435129 57435487 -131844067 + MLT1J LTR MaLR 44 415 -96 205 304 18 71 chr6 57437228 57437340 -131842214 - L2 LINE L2 -325 2988 2883 4494 48 0 4 chr6 57438084 57438605 -131840949 - L1PA7 LINE L1 -2 6152 5634 271 316 160 55 chr6 57438986 57439293 -131840261 - L2 LINE L2 -20 3252 2914 979 270 165 28 chr6 57439500 57440141 -131839413 + L1ME4a LINE L1 5282 6010 -111 314 349 194 23 chr6 57440244 57441231 -131838323 - L2 LINE L2 -609 2705 1550 426 20 0 0 chr6 57441426 57441477 -131838077 + (TG)n Simple_repeat Simple_repeat 1 51 0 664 283 82 66 chr6 57442457 57442939 -131836615 + L2 LINE L2 2763 3263 -50 394 281 111 29 chr6 57443164 57443335 -131836219 - L1ME3 LINE L1 -2 6160 5976 2166 151 8 11 chr6 57443335 57443705 -131835849 + LTR57 LTR ERVL 1 369 -42 1571 251 54 66 chr6 57443744 57444584 -131834970 - L1ME3 LINE L1 -180 5982 5131 344 353 8 8 chr6 57447741 57447874 -131831680 + MIR SINE MIR 58 190 -72 193 243 279 18 chr6 57447903 57448014 -131831540 + MIR3 SINE MIR 54 193 -15 192 304 0 0 chr6 57448086 57448132 -131831422 + L3b LINE CR1 1528 1573 -10 1726 139 8 8 chr6 57449160 57449426 -131830128 + AluSx SINE Alu 39 304 -8 2417 90 0 10 chr6 57450333 57450644 -131828910 - AluSq SINE Alu -5 308 1 181 337 114 29 chr6 57452103 57452453 -131827101 + L2 LINE L2 2265 2644 -670 261 319 55 11 chr6 57452511 57452602 -131826952 + MIR SINE MIR 65 159 -103 517 257 153 31 chr6 57453454 57453676 -131825878 - MIR SINE MIR -1 261 13 586 261 65 13 chr6 57454086 57454239 -131825315 + MLT1G1 LTR MaLR 2 162 -433 475 92 0 0 chr6 57454262 57454327 -131825227 + Tigger4(Zombi) DNA MER2_type 2666 2730 -1 1516 239 107 10 chr6 57454328 57454722 -131824832 + MLT1G1 LTR MaLR 161 592 -3 357 226 89 37 chr6 57454965 57455115 -131824439 + MER20B DNA MER1_type 3 169 -50 1517 169 20 37 chr6 57455173 57455468 -131824086 - AluJb SINE Alu -20 292 3 509 230 152 47 chr6 57455520 57455711 -131823843 - MIR SINE MIR -3 259 49 778 155 84 13 chr6 57458340 57458495 -131821059 + MIR SINE MIR 72 237 -25 423 255 51 0 chr6 57459500 57459598 -131819956 - L2 LINE L2 -3 3310 3208 2312 105 0 3 chr6 57460145 57460449 -131819105 + AluSg SINE Alu 1 303 -7 541 206 29 37 chr6 57460582 57460718 -131818836 + MIR SINE MIR 31 165 -97 230 267 183 0 chr6 57461307 57461427 -131818127 + MIR3 SINE MIR 64 205 -3 586 248 9 0 chr6 57462009 57462122 -131817432 - MER81 DNA DNA 0 114 1 210 308 0 15 chr6 57462130 57462195 -131817359 - MER5A DNA MER1_type -4 185 122 580 183 51 44 chr6 57462290 57462427 -131817127 + MER5B DNA MER1_type 1 138 -40 633 249 8 24 chr6 57462642 57462840 -131816714 + L1ME3A LINE L1 5650 5810 -311 887 207 0 6 chr6 57463716 57463880 -131815674 - MER5A DNA MER1_type -1 188 26 231 167 0 0 chr6 57463908 57463950 -131815604 + CT-rich Low_complexity Low_complexity 3 44 0 3135 160 36 33 chr6 57463950 57464526 -131815028 - L1MB5 LINE L1 -13 6161 5584 251 241 241 27 chr6 57464532 57464644 -131814910 - MIR SINE MIR -121 141 6 471 222 111 14 chr6 57464997 57465141 -131814413 - MIR SINE MIR -12 250 93 2399 105 0 3 chr6 57465922 57466235 -131813319 - AluSx SINE Alu 0 312 1 359 194 36 133 chr6 57466437 57466602 -131812952 + MLT1I LTR MaLR 249 397 -12 190 289 34 107 chr6 57466650 57466799 -131812755 - L2 LINE L2 -8 3305 3168 400 267 23 85 chr6 57467101 57467277 -131812277 - MIR3 SINE MIR -7 201 37 5974 190 43 60 chr6 57469061 57470329 -131809225 - Charlie1a DNA MER1_type -1306 1455 213 2338 138 20 0 chr6 57470329 57470670 -131808884 + MER7A DNA MER2_type 1 346 0 5974 190 43 60 chr6 57470670 57470880 -131808674 - Charlie1a DNA MER1_type -2548 213 1 236 247 100 53 chr6 57470983 57471173 -131808381 - L2 LINE L2 -1314 2000 1802 1943 207 50 7 chr6 57471312 57471728 -131807826 + MLT1C LTR MaLR 34 467 0 231 36 0 0 chr6 57471861 57471889 -131807665 + (TG)n Simple_repeat Simple_repeat 2 29 0 2136 121 0 3 chr6 57472703 57473029 -131806525 + AluSx SINE Alu 1 325 0 24 67 0 0 chr6 57473820 57473865 -131805689 + AT_rich Low_complexity Low_complexity 1 45 0 205 263 46 112 chr6 57473919 57473991 -131805563 - MIR SINE MIR -64 198 140 2251 111 47 60 chr6 57473991 57474371 -131805183 - THE1C LTR MaLR 0 375 1 205 263 46 112 chr6 57474371 57474450 -131805104 - MIR SINE MIR -122 140 57 371 250 0 0 chr6 57475556 57475636 -131803918 - MER69 DNA AcHobo 0 2526 2447 1128 163 0 0 chr6 57475648 57475832 -131803722 + AluJb SINE Alu 129 312 0 529 218 20 0 chr6 57475893 57475994 -131803560 - MER69 DNA AcHobo -2389 137 35 3166 211 91 14 chr6 57476187 57476903 -131802651 - MER21B LTR ERV1 -81 782 12 706 276 81 5 chr6 57477885 57478106 -131801448 + MIR SINE MIR 2 239 -23 202 246 16 0 chr6 57478212 57478273 -131801281 + (TA)n Simple_repeat Simple_repeat 1 62 0 572 322 136 49 chr6 57478680 57479090 -131800464 + L2 LINE L2 2254 2627 -645 832 178 0 16 chr6 57479090 57479246 -131800308 + FLAM_C SINE Alu 1 133 0 572 322 136 49 chr6 57479246 57479693 -131799861 + L2 LINE L2 2627 3197 -75 852 39 0 0 chr6 57480069 57480173 -131799381 + (TG)n Simple_repeat Simple_repeat 2 105 0 399 317 183 0 chr6 57481428 57481592 -131797962 - MIR SINE MIR -21 241 48 213 132 0 0 chr6 57481869 57481907 -131797647 + (TG)n Simple_repeat Simple_repeat 2 39 0 229 222 16 16 chr6 57482530 57482593 -131796961 - MIR SINE MIR 0 262 200 308 297 174 29 chr6 57482617 57482755 -131796799 + MER5A DNA MER1_type 25 182 -7 262 339 31 8 chr6 57483366 57483496 -131796058 - MIR3 SINE MIR -28 180 48 192 40 0 0 chr6 57483609 57483634 -131795920 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 230 213 185 0 chr6 57483827 57483935 -131795619 - L1ME4a LINE L1 -3 6118 5991 350 236 11 73 chr6 57483937 57484002 -131795552 - HAL1b LINE L1 -232 1116 1049 1484 203 34 14 chr6 57484002 57484293 -131795261 + AluJb SINE Alu 6 302 -10 350 236 11 73 chr6 57484293 57484405 -131795149 - HAL1b LINE L1 -299 1049 950 24 0 0 0 chr6 57484555 57484579 -131794975 + AT_rich Low_complexity Low_complexity 1 24 0 477 280 143 43 chr6 57485048 57485441 -131794113 - HAL1 LINE L1 -706 1801 1370 436 254 179 12 chr6 57485459 57485632 -131793922 + MER58A DNA MER1_type 1 202 -22 994 194 0 12 chr6 57485632 57485802 -131793752 - FRAM SINE Alu -11 165 1 39265 63 4 3 chr6 57486069 57491738 -131787816 - L1PA6 LINE L1 -153 6001 324 3797 134 65 0 chr6 57493512 57494110 -131785444 + L1PA16 LINE L1 5523 6159 -7 695 224 10 58 chr6 57494520 57494725 -131784829 + MIR SINE MIR 68 262 0 240 135 0 0 chr6 57494881 57494918 -131784636 + L1MCa LINE L1 2196 2232 -4194 648 262 5 5 chr6 57495093 57495303 -131784251 + L1MCa LINE L1 2412 2621 -3805 189 170 0 64 chr6 57496138 57496185 -131783369 + MIR SINE MIR 103 146 -116 1344 266 138 24 chr6 57496375 57497227 -131782327 - L2 LINE L2 0 3313 2309 192 308 0 0 chr6 57497478 57497530 -131782024 + MIR3 SINE MIR 146 197 -11 557 249 61 58 chr6 57497616 57497877 -131781677 - MIR SINE MIR 0 262 1 246 313 99 8 chr6 57498170 57498301 -131781253 - MIR3 SINE MIR -24 184 42 1806 224 59 8 chr6 57498456 57499389 -131780165 - L1ME3 LINE L1 -88 6074 5072 677 319 62 14 chr6 57501656 57501948 -131777606 + L2 LINE L2 3003 3308 -5 405 294 58 100 chr6 57502054 57502364 -131777190 - L2 LINE L2 -8 3264 2968 614 249 102 40 chr6 57502470 57502695 -131776859 - L2 LINE L2 0 3313 3075 638 301 32 20 chr6 57502985 57503231 -131776323 + MIR SINE MIR 14 262 0 415 295 176 41 chr6 57503525 57503888 -131775666 + L3 LINE CR1 1144 1555 -22 389 313 50 3 chr6 57504086 57504251 -131775303 - MIR SINE MIR -37 171 30 189 372 0 11 chr6 57504338 57504432 -131775122 + L2 LINE L2 2616 2708 -606 597 282 55 20 chr6 57504582 57504837 -131774717 - Charlie8 DNA MER1_type -2151 266 3 348 263 288 5 chr6 57505915 57506113 -131773441 - MIR SINE MIR 0 262 9 693 309 16 4 chr6 57506748 57506994 -131772560 + MLT1J LTR MaLR 7 255 -256 323 305 65 103 chr6 57508009 57508301 -131771253 + L2 LINE L2 2966 3246 -26 2146 147 0 0 chr6 57508981 57509293 -131770261 + AluSx SINE Alu 1 312 0 1824 161 11 0 chr6 57509687 57509966 -131769588 + AluJb SINE Alu 5 286 -26 610 238 184 20 chr6 57510146 57510581 -131768973 - L2 LINE L2 -61 3252 2742 699 261 20 15 chr6 57511129 57511324 -131768230 - MIR SINE MIR -2 260 65 309 289 12 12 chr6 57511501 57511584 -131767970 + L2 LINE L2 3190 3272 0 274 192 82 14 chr6 57511571 57511644 -131767910 + MIR SINE MIR 185 262 0 * 2229 80 0 13 chr6 57512343 57512666 -131766888 - AluY SINE Alu 0 311 1 323 264 107 21 chr6 57512734 57512874 -131766680 + MIR SINE MIR 52 203 -59 252 259 25 12 chr6 57513631 57513712 -131765842 + (TA)n Simple_repeat Simple_repeat 2 83 0 23 33 0 0 chr6 57514847 57514877 -131764677 + AT_rich Low_complexity Low_complexity 1 30 0 305 216 0 14 chr6 57515003 57515077 -131764477 - AluS SINE Alu -229 74 2 1452 206 114 46 chr6 57515833 57515877 -131763677 - MLT1C LTR MaLR 0 467 427 2387 88 0 0 chr6 57515877 57516172 -131763382 + AluSx SINE Alu 3 297 -15 1452 206 114 46 chr6 57516172 57516564 -131762990 - MLT1C LTR MaLR -40 427 1 1263 134 113 0 chr6 57516685 57516923 -131762631 + L1P LINE L1 1 265 -5881 242 317 214 25 chr6 57517740 57517983 -131761571 + L3b LINE CR1 1105 1393 -190 931 250 74 84 chr6 57518120 57518512 -131761042 + L2 LINE L2 2925 3312 -1 504 265 15 22 chr6 57519059 57519195 -131760359 + MER5B DNA MER1_type 44 178 0 514 304 56 0 chr6 57520318 57520479 -131759075 - MIR SINE MIR -2 260 91 212 268 0 0 chr6 57520935 57520976 -131758578 + L2 LINE L2 3217 3257 -15 201 310 127 0 chr6 57523589 57523660 -131755894 + L2 LINE L2 3193 3272 0 227 339 29 76 chr6 57524156 57524327 -131755227 - L2 LINE L2 -38 3234 3072 737 250 85 11 chr6 57524798 57524986 -131754568 + MER63A DNA MER1_type 9 210 0 216 0 0 0 chr6 57525699 57525723 -131753831 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2009 118 0 0 chr6 57525729 57526001 -131753553 - AluSc SINE Alu -37 272 1 1220 266 12 101 chr6 57526074 57526637 -131752917 + L2 LINE L2 2788 3313 0 324 248 0 26 chr6 57527160 57527273 -131752281 - L1MC5 LINE L1 -44 7917 7808 1067 156 33 0 chr6 57527278 57527458 -131752096 + MER5A DNA MER1_type 2 187 -2 1110 225 65 109 chr6 57527468 57528281 -131751273 - L1MC5 LINE L1 -158 7803 7027 607 133 10 10 chr6 57528303 57528401 -131751153 - AluJ/FLAM SINE Alu -212 100 3 1006 235 63 35 chr6 57528566 57528932 -131750622 - L1MC4a LINE L1 -897 6911 6536 1341 253 146 23 chr6 57529192 57529406 -131750148 - L1MC4a LINE L1 -1575 6233 6047 7397 35 12 0 chr6 57529406 57530318 -131749236 - L1PA3 LINE L1 -1 6154 5236 1341 253 146 23 chr6 57530318 57530838 -131748716 - L1MC4a LINE L1 -1761 6047 5409 261 218 11 35 chr6 57530974 57531061 -131748493 - L1MC4a LINE L1 -2370 5438 5354 883 267 73 40 chr6 57531072 57531469 -131748085 + L2 LINE L2 2887 3296 -17 195 100 0 0 chr6 57531471 57531501 -131748053 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 240 258 0 0 chr6 57532482 57532548 -131747006 + MLT1K LTR MaLR 523 588 0 255 333 16 41 chr6 57533033 57533156 -131746398 - MIR SINE MIR -87 121 2 204 315 56 35 chr6 57534621 57534764 -131744790 + L2 LINE L2 2333 2478 -836 244 273 31 78 chr6 57534940 57535068 -131744486 - MLT1K LTR MaLR -356 232 111 2104 144 0 6 chr6 57535825 57536137 -131743417 + AluSx SINE Alu 1 310 -2 248 316 134 62 chr6 57536197 57536488 -131743066 - L2 LINE L2 -3 3310 2999 195 300 56 56 chr6 57536750 57536840 -131742714 + L2 LINE L2 2613 2702 -612 355 265 0 12 chr6 57537090 57537173 -131742381 + L2 LINE L2 3190 3271 -1 788 250 109 37 chr6 57537515 57537846 -131741708 + MLT1J1 LTR MaLR 94 446 0 1388 69 133 0 chr6 57538391 57538594 -131740960 + MER30 DNA MER1_type 1 230 0 2117 111 0 3 chr6 57538611 57538899 -131740655 + AluSg SINE Alu 1 287 -23 1069 179 0 12 chr6 57539497 57539670 -131739884 + FRAM SINE Alu 1 168 -8 280 316 51 36 chr6 57539706 57539959 -131739595 + L1ME4a LINE L1 111 367 -6056 687 281 72 21 chr6 57539986 57540416 -131739138 + L1ME4a LINE L1 1916 2367 -4755 * 1932 235 89 26 chr6 57540414 57540470 -131739084 + L1MB8 LINE L1 5523 5574 -604 2580 63 0 0 chr6 57540470 57540769 -131738785 - AluY SINE Alu -12 299 1 1932 235 89 26 chr6 57540769 57541329 -131738225 + L1MB8 LINE L1 5574 6178 0 1076 260 45 48 chr6 57541448 57542032 -131737522 + L1ME4a LINE L1 2460 3041 -4081 2124 212 89 34 chr6 57542117 57542647 -131736907 + L1ME4a LINE L1 3032 3620 -3321 1937 186 78 36 chr6 57542647 57543148 -131736406 + Charlie1b DNA MER1_type 2 523 0 2124 212 89 34 chr6 57543148 57543394 -131736160 + L1ME4a LINE L1 3620 3851 -3090 367 231 56 9 chr6 57543392 57543500 -131736054 + L1ME4a LINE L1 4363 4475 -2466 * 297 240 107 0 chr6 57543583 57543733 -131735821 + L1ME4a LINE L1 6511 6676 -240 324 233 90 15 chr6 57543758 57543891 -131735663 + L1ME4a LINE L1 6741 6883 -33 2324 75 0 0 chr6 57543946 57544269 -131735285 - AluY SINE Alu 0 323 1 391 333 12 54 chr6 57544335 57544503 -131735051 - MIR3 SINE MIR -27 181 21 240 100 0 0 chr6 57544830 57544870 -131734684 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 236 331 24 65 chr6 57545663 57545787 -131733767 + MIR SINE MIR 34 152 -56 1905 103 14 21 chr6 57546405 57546687 -131732867 + L1PA8 LINE L1 5893 6172 0 1077 253 45 33 chr6 57546717 57547116 -131732438 + L2 LINE L2 2449 2852 -462 679 279 9 22 chr6 57547092 57547321 -131732233 + L2 LINE L2 3087 3312 -1 * 270 306 14 0 chr6 57547925 57547997 -131731557 - MIR SINE MIR -174 88 16 376 202 202 0 chr6 57548025 57548139 -131731415 + MIR SINE MIR 73 209 -53 438 207 45 36 chr6 57548220 57548331 -131731223 - MIR SINE MIR -150 112 1 312 176 33 33 chr6 57550170 57550261 -131729293 - LTR58 LTR ERV1 -239 440 350 459 0 0 0 chr6 57551299 57551350 -131728204 + (TG)n Simple_repeat Simple_repeat 2 52 0 252 323 0 0 chr6 57551397 57551462 -131728092 + MER5B DNA MER1_type 1 65 -113 731 255 20 15 chr6 57551462 57551658 -131727896 + L1MD3 LINE L1 7789 7985 -10 546 226 48 8 chr6 57551660 57551784 -131727770 + MER5B DNA MER1_type 50 178 0 441 0 0 0 chr6 57551991 57552040 -131727514 + (TG)n Simple_repeat Simple_repeat 2 50 0 404 239 26 51 chr6 57553490 57553607 -131725947 - MER5B DNA MER1_type -63 115 2 323 305 16 0 chr6 57553732 57553860 -131725694 - MIR SINE MIR -86 176 47 216 293 35 60 chr6 57553916 57554032 -131725522 - MIR SINE MIR -85 177 65 241 205 0 0 chr6 57554267 57554306 -131725248 - MER81 DNA DNA -75 39 1 521 281 81 27 chr6 57554642 57554827 -131724727 - MIR SINE MIR -10 252 58 307 316 112 13 chr6 57555683 57555835 -131723719 - MER5B DNA MER1_type -1 177 11 970 200 11 0 chr6 57555843 57556018 -131723536 + MER5B DNA MER1_type 1 177 -1 820 212 127 0 chr6 57556115 57556280 -131723274 - MER5A DNA MER1_type -3 186 1 229 333 65 32 chr6 57556941 57557064 -131722490 - MIR SINE MIR -125 137 11 311 221 255 67 chr6 57557150 57557299 -131722255 - MER5A DNA MER1_type -1 188 12 2459 71 0 7 chr6 57557344 57557654 -131721900 + AluY SINE Alu 1 308 -3 207 239 11 43 chr6 57559447 57559539 -131720015 + (TATAA)n Simple_repeat Simple_repeat 1 89 0 1037 205 36 12 chr6 57560854 57561103 -131718451 - LTR37A LTR ERV1 -4 422 168 821 247 109 22 chr6 57561923 57562190 -131717364 + L2 LINE L2 2833 3122 -191 687 84 34 230 chr6 57562192 57562288 -131717266 + Charlie3 DNA MER1_type 2564 2611 -95 2397 109 0 0 chr6 57562288 57562601 -131716953 + AluSq SINE Alu 1 313 0 687 84 34 230 chr6 57562601 57562682 -131716872 + Charlie3 DNA MER1_type 2611 2706 0 890 245 28 32 chr6 57562954 57563207 -131716347 - MIR SINE MIR 0 262 11 1752 183 58 84 chr6 57563554 57564052 -131715502 + MER31A LTR ERV1 1 485 0 288 0 0 0 chr6 57564117 57564149 -131715405 + (TA)n Simple_repeat Simple_repeat 2 33 0 1001 217 0 0 chr6 57565121 57565310 -131714244 - MER58A DNA MER1_type -5 219 31 7619 131 38 8 chr6 57565528 57566723 -131712831 - Tigger3b DNA MER2_type 0 1231 1 555 320 37 40 chr6 57567423 57567882 -131711672 + LTR33 LTR ERVL 1 519 -2 277 232 0 0 chr6 57568657 57568713 -131710841 - MLT1L LTR MaLR -7 608 553 462 270 43 37 chr6 57569349 57569512 -131710042 - MIR SINE MIR -14 248 85 229 331 161 0 chr6 57569982 57570106 -131709448 - MIR3 SINE MIR -13 195 52 1922 137 31 3 chr6 57570358 57570651 -131708903 - AluSx SINE Alu -9 303 3 204 274 0 16 chr6 57570954 57571016 -131708538 + CT-rich Low_complexity Low_complexity 6 66 0 288 346 39 10 chr6 57571233 57571337 -131708217 + L2 LINE L2 3162 3268 -4 1800 108 0 118 chr6 57572049 57572405 -131707149 - AluSx SINE Alu 0 320 3 191 326 98 42 chr6 57572516 57572752 -131706802 + L2 LINE L2 2633 2881 -433 1626 181 26 0 chr6 57572798 57573099 -131706455 - MER58B DNA MER1_type 0 341 27 203 219 78 31 chr6 57573383 57573447 -131706107 + L2 LINE L2 3205 3271 -1 2158 96 0 50 chr6 57573565 57573887 -131705667 + AluSg SINE Alu 5 310 0 340 317 87 12 chr6 57574947 57575108 -131704446 + MIR SINE MIR 12 184 -78 238 288 15 0 chr6 57575181 57575247 -131704307 + L2 LINE L2 3241 3307 -6 378 233 150 8 chr6 57575773 57575893 -131703661 - MER91C DNA MER1_type -1 139 3 1432 212 45 21 chr6 57577248 57577578 -131701976 - MER46C DNA MER2_type 0 338 1 884 206 11 16 chr6 57577614 57577803 -131701751 + MER5A DNA MER1_type 1 188 -1 196 250 69 42 chr6 57577804 57577876 -131701678 + MIR3 SINE MIR 1 74 -134 * 200 236 45 91 chr6 57577874 57577984 -131701570 + MIR SINE MIR 102 206 -56 283 129 145 16 chr6 57578445 57578507 -131701047 + MIR SINE MIR 60 129 -79 515 305 11 82 chr6 57579238 57579507 -131700047 + MIR SINE MIR 2 251 -11 290 269 14 123 chr6 57580270 57580331 -131699223 - L2 LINE L2 -160 3112 3046 396 59 0 0 chr6 57580331 57580382 -131699172 + (TG)n Simple_repeat Simple_repeat 1 51 0 290 269 14 123 chr6 57580382 57580539 -131699015 - L2 LINE L2 -226 3046 2918 974 197 61 10 chr6 57580761 57580959 -131698595 - MER3 DNA MER1_type 0 209 2 899 265 103 14 chr6 57581152 57581503 -131698051 + LTR33A LTR ERVL 142 523 0 222 241 37 0 chr6 57581704 57581758 -131697796 - MIR SINE MIR -105 157 102 840 238 36 66 chr6 57581764 57582096 -131697458 + L1ME2 LINE L1 5840 6161 -3 384 247 32 39 chr6 57582104 57582258 -131697296 + L1MC5 LINE L1 7772 7924 -37 3456 78 15 55 chr6 57582586 57582737 -131696817 + L1PA8A LINE L1 4864 5019 -1112 2385 100 0 13 chr6 57582737 57583047 -131696507 + AluSx SINE Alu 1 306 -6 3456 78 15 55 chr6 57583047 57583479 -131696075 + L1PA8A LINE L1 5019 5415 -716 2342 92 0 29 chr6 57583479 57583793 -131695761 + AluSq SINE Alu 1 305 -8 3456 78 15 55 chr6 57583793 57583871 -131695683 + L1PA8A LINE L1 5415 5495 -636 7932 38 0 6 chr6 57583871 57585462 -131694092 + L1PA5 LINE L1 4598 6154 0 5239 85 16 11 chr6 57585462 57586142 -131693412 + L1PA8 LINE L1 5474 6170 -2 290 364 96 32 chr6 57586384 57586604 -131692950 + L2 LINE L2 2830 3063 -209 21 0 0 0 chr6 57588164 57588185 -131691369 + AT_rich Low_complexity Low_complexity 1 21 0 226 324 169 7 chr6 57589966 57590102 -131689452 + MIR SINE MIR 69 226 -36 401 250 41 25 chr6 57590212 57590365 -131689189 + MIR SINE MIR 9 162 -67 857 41 0 0 chr6 57590381 57590479 -131689075 + L1PA5 LINE L1 5791 5888 -266 248 170 0 0 chr6 57591049 57591096 -131688458 + L2 LINE L2 3266 3312 -1 223 354 223 0 chr6 57591103 57591278 -131688276 + L3 LINE CR1 741 954 -623 450 333 25 0 chr6 57591855 57592014 -131687540 + MIR SINE MIR 86 248 -14 1926 255 93 47 chr6 57593195 57594010 -131685544 - L2 LINE L2 -499 2815 1963 443 271 60 54 chr6 57595282 57595448 -131684106 + MER5A DNA MER1_type 21 187 -2 193 209 30 0 chr6 57596633 57596700 -131682854 + (TG)n Simple_repeat Simple_repeat 2 70 0 3705 126 48 6 chr6 57596705 57597331 -131682223 + MER39B LTR ERV1 2 653 0 2404 81 0 3 chr6 57597364 57597662 -131681892 - AluY SINE Alu -14 297 1 1370 152 5 0 chr6 57597688 57597898 -131681656 + AluSp SINE Alu 1 211 -102 1540 310 98 26 chr6 57597999 57598905 -131680649 - L2 LINE L2 -618 2696 1726 24 53 0 0 chr6 57600180 57600218 -131679336 + AT_rich Low_complexity Low_complexity 1 38 0 2261 134 28 52 chr6 57600471 57600895 -131678659 + MLT2D LTR ERVL 1 414 0 414 294 218 46 chr6 57601051 57601445 -131678109 - L2 LINE L2 -481 2833 2372 25 0 0 0 chr6 57601723 57601748 -131677806 + AT_rich Low_complexity Low_complexity 1 25 0 281 147 13 27 chr6 57601799 57601840 -131677714 + L1MB7 LINE L1 6105 6146 -38 1611 195 36 3 chr6 57601840 57602173 -131677381 + MER2 DNA MER2_type 1 344 0 281 147 13 27 chr6 57602173 57602206 -131677348 + L1MB7 LINE L1 6146 6178 -6 2017 138 0 22 chr6 57602538 57602849 -131676705 - AluJb SINE Alu -8 304 1 500 247 101 74 chr6 57602992 57603369 -131676185 - L1ME LINE L1 -324 5797 5411 427 296 70 42 chr6 57603839 57604052 -131675502 - MIR SINE MIR -23 239 21 242 297 71 80 chr6 57604345 57604557 -131674997 + L2 LINE L2 899 1108 -2206 334 268 153 25 chr6 57604613 57604710 -131674844 - MER63B DNA MER1_type -627 434 351 336 102 0 0 chr6 57604710 57604759 -131674795 + (TA)n Simple_repeat Simple_repeat 2 50 0 334 268 153 25 chr6 57604759 57604818 -131674736 - MER63B DNA MER1_type -710 351 258 1451 108 0 0 chr6 57604835 57605021 -131674533 + AluSc SINE Alu 1 186 -123 939 266 25 0 chr6 57605075 57605312 -131674242 - MER63B DNA MER1_type -192 244 2 330 247 27 0 chr6 57605313 57605386 -131674168 + MER5A DNA MER1_type 115 189 0 29 28 0 0 chr6 57605652 57605688 -131673866 + AT_rich Low_complexity Low_complexity 1 36 0 26 64 0 0 chr6 57606063 57606110 -131673444 + AT_rich Low_complexity Low_complexity 1 47 0 2177 109 3 10 chr6 57606571 57606873 -131672681 - AluSx SINE Alu -12 300 1 247 277 72 0 chr6 57606955 57607038 -131672516 - L2 LINE L2 -36 3236 3148 196 347 147 18 chr6 57607175 57607576 -131671978 - L2 LINE L2 -575 2739 2287 435 329 50 100 chr6 57607588 57607889 -131671665 + L2 LINE L2 2986 3271 -1 2462 106 44 48 chr6 57608048 57608482 -131671072 + MSTB1 LTR MaLR 1 432 0 468 303 55 28 chr6 57609232 57609377 -131670177 - MIR3 SINE MIR -30 178 30 550 311 24 24 chr6 57609834 57610046 -131669508 - MIR SINE MIR 0 262 51 715 266 24 40 chr6 57610186 57610438 -131669116 - MIR SINE MIR -13 249 2 301 292 248 0 chr6 57610703 57610864 -131668690 + MIR SINE MIR 52 252 -10 465 242 57 32 chr6 57610898 57611022 -131668532 - L2 LINE L2 -9 3304 3178 547 200 37 7 chr6 57611167 57611302 -131668252 - Charlie1 DNA MER1_type 0 2761 2623 * 790 217 16 91 chr6 57611291 57611544 -131668010 - Charlie1 DNA MER1_type -2524 237 4 25 31 0 0 chr6 57611578 57611610 -131667944 + AT_rich Low_complexity Low_complexity 1 32 0 2212 130 7 0 chr6 57611918 57612226 -131667328 - AluSx SINE Alu -2 310 1 482 185 0 0 chr6 57612834 57612905 -131666649 - MIR SINE MIR -141 121 51 267 312 155 9 chr6 57612905 57613062 -131666492 + MIR SINE MIR 1 180 -82 587 295 114 17 chr6 57613315 57613552 -131666002 + MIR SINE MIR 2 261 -1 381 310 109 6 chr6 57614367 57614541 -131665013 + L2 LINE L2 3122 3313 0 336 234 108 104 chr6 57614706 57614937 -131664617 - HAL1 LINE L1 -2181 326 95 200 345 71 18 chr6 57615321 57615434 -131664120 + MIR3 SINE MIR 3 121 -87 366 297 65 19 chr6 57615664 57615819 -131663735 - L2 LINE L2 -34 3279 3118 360 339 137 36 chr6 57615904 57616349 -131663205 - L2 LINE L2 -354 2960 2471 234 128 0 0 chr6 57617146 57617185 -131662369 + (TG)n Simple_repeat Simple_repeat 2 40 0 900 171 7 7 chr6 57617247 57617399 -131662155 - AluJb SINE Alu -24 288 137 2065 127 3 0 chr6 57618229 57618543 -131661011 - AluSp SINE Alu 0 315 1 30 0 0 0 chr6 57618553 57618583 -131660971 + AT_rich Low_complexity Low_complexity 1 30 0 265 135 0 0 chr6 57618845 57618882 -131660672 + tRNA-Trp tRNA tRNA 1 37 -38 2034 170 76 47 chr6 57619377 57619825 -131659729 + MLT1D LTR MaLR 21 481 -24 268 225 88 0 chr6 57619854 57619934 -131659620 + MER63 DNA MER1_type 27 739 -97 1015 181 43 0 chr6 57620769 57620979 -131658575 + MER20 DNA MER1_type 1 219 0 2277 88 0 7 chr6 57622248 57622545 -131657009 - AluSq SINE Alu -18 295 1 608 318 0 26 chr6 57622660 57622852 -131656702 - MIR SINE MIR -71 191 5 330 290 130 0 chr6 57624814 57624914 -131654640 + L2 LINE L2 3199 3311 -2 274 266 57 16 chr6 57625471 57625595 -131653959 + MARNA DNA Mariner 263 391 -195 349 318 71 0 chr6 57627223 57627377 -131652177 - MIR SINE MIR -70 192 28 307 280 51 70 chr6 57628331 57628488 -131651066 + MER91A DNA MER1_type 1 154 -42 30 0 0 0 chr6 57629505 57629535 -131650019 + AT_rich Low_complexity Low_complexity 1 30 0 357 351 18 0 chr6 57630042 57630156 -131649398 - L2 LINE L2 -16 3256 3141 274 238 0 0 chr6 57630493 57630556 -131648998 + L1MA8 LINE L1 590 652 -6378 13449 191 71 30 chr6 57630557 57637099 -131642455 + L1MA8 LINE L1 732 7250 -1 634 275 89 19 chr6 57637240 57637553 -131642001 - MER46C DNA MER2_type -1 337 3 219 159 0 23 chr6 57637940 57637984 -131641570 + (TG)n Simple_repeat Simple_repeat 2 44 0 188 277 185 0 chr6 57638113 57638178 -131641376 + L2 LINE L2 3183 3259 -13 559 241 85 0 chr6 57638189 57638330 -131641224 + MIR SINE MIR 2 154 -108 660 267 89 75 chr6 57638337 57638696 -131640858 - MLT1I LTR MaLR -5 404 41 282 296 41 10 chr6 57638706 57638804 -131640750 + MIR SINE MIR 152 252 -10 22 56 0 0 chr6 57638815 57638851 -131640703 + AT_rich Low_complexity Low_complexity 1 36 0 1083 23 0 8 chr6 57638851 57638981 -131640573 + L1PA7 LINE L1 6024 6152 -2 2424 81 7 3 chr6 57641607 57641916 -131637638 + AluY SINE Alu 1 310 -1 725 221 50 112 chr6 57643299 57643557 -131635997 - MIR SINE MIR -7 255 14 198 200 89 0 chr6 57644070 57644115 -131635439 - MIR SINE MIR -86 122 73 22 35 0 0 chr6 57644522 57644551 -131635003 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 57644646 57644683 -131634871 + AT_rich Low_complexity Low_complexity 1 37 0 2055 112 0 21 chr6 57644943 57645230 -131634324 - AluSq SINE Alu -32 281 1 196 412 31 0 chr6 57645652 57645749 -131633805 + MIR SINE MIR 42 141 -67 1801 190 0 13 chr6 57646089 57646394 -131633160 - AluJo SINE Alu -11 301 1 207 265 88 140 chr6 57646532 57646804 -131632750 + L2 LINE L2 3015 3272 0 768 233 118 25 chr6 57647083 57647405 -131632149 - L1ME4a LINE L1 -29 6092 5741 2329 112 3 3 chr6 57647610 57647923 -131631631 - AluSp SINE Alu 0 313 1 327 304 37 91 chr6 57649369 57649612 -131629942 + L3 LINE CR1 1337 1566 -11 25 51 0 0 chr6 57650391 57650430 -131629124 + AT_rich Low_complexity Low_complexity 1 39 0 1160 268 87 30 chr6 57651378 57651871 -131627683 - LTR33 LTR ERVL 0 521 1 800 245 47 22 chr6 57653629 57653858 -131625696 + MIR SINE MIR 28 261 -1 603 245 123 0 chr6 57653966 57654129 -131625425 + MIR SINE MIR 8 190 -72 322 320 0 31 chr6 57654312 57654440 -131625114 + MIR SINE MIR 22 145 -63 213 111 44 22 chr6 57655114 57655159 -131624395 + CT-rich Low_complexity Low_complexity 1 46 0 1055 152 16 173 chr6 57656089 57656522 -131623032 + MLT1A1 LTR MaLR 1 365 0 2005 261 133 13 chr6 57657456 57658164 -131621390 - L2 LINE L2 -413 2901 2109 330 190 13 25 chr6 57658162 57658241 -131621313 + MIR SINE MIR 143 220 -42 * 284 340 60 0 chr6 57659036 57659136 -131620418 + L2 LINE L2 3164 3269 -3 204 135 0 0 chr6 57659717 57659754 -131619800 + (CA)n Simple_repeat Simple_repeat 1 37 0 248 218 18 18 chr6 57659755 57659810 -131619744 + L2 LINE L2 3214 3268 -4 214 345 136 0 chr6 57662159 57662269 -131617285 - L2 LINE L2 -1 3271 3147 341 221 148 60 chr6 57662490 57662634 -131616920 - MIR SINE MIR -37 171 37 269 347 63 0 chr6 57662823 57662918 -131616636 - L2 LINE L2 -9 3263 3163 359 178 0 109 chr6 57662954 57663055 -131616499 + MER21B LTR ERV1 1 90 -773 1181 242 17 48 chr6 57663204 57663555 -131615999 + MER21B LTR ERV1 127 466 -397 742 244 124 14 chr6 57663792 57664009 -131615545 + MIR SINE MIR 20 260 -2 259 311 62 36 chr6 57664491 57664684 -131614870 - MIR3 SINE MIR -6 202 5 980 113 63 0 chr6 57665972 57666131 -131613423 - AluSg/x SINE Alu -7 303 135 654 299 20 10 chr6 57666292 57666511 -131613043 + MIR SINE MIR 42 262 0 2165 80 17 7 chr6 57666777 57667066 -131612488 - AluY SINE Alu -19 292 1 227 328 49 41 chr6 57667186 57667308 -131612246 - L2 LINE L2 -5 3267 3145 251 314 191 0 chr6 57667337 57667442 -131612112 + L2 LINE L2 3147 3271 -1 43 35 0 0 chr6 57668352 57668409 -131611145 + AT_rich Low_complexity Low_complexity 1 57 0 894 296 74 25 chr6 57671112 57671663 -131607891 + L1ME4a LINE L1 5519 6096 -25 217 241 37 0 chr6 57672299 57672353 -131607201 - MIR SINE MIR -97 165 110 517 296 25 12 chr6 57672363 57672525 -131607029 + MIR SINE MIR 98 261 -1 304 366 0 0 chr6 57672545 57672627 -131606927 - MIR SINE MIR -111 97 16 298 314 50 16 chr6 57673707 57673828 -131605726 - MIR SINE MIR -69 193 69 423 220 77 66 chr6 57674080 57674262 -131605292 - MIR3 SINE MIR -15 193 10 675 288 46 23 chr6 57674353 57674572 -131604982 + MIR SINE MIR 38 261 -1 258 301 137 81 chr6 57675274 57675596 -131603958 + L2 LINE L2 2925 3264 -8 222 338 0 0 chr6 57678356 57678424 -131601130 - L3 LINE CR1 -9 1568 1501 490 312 45 56 chr6 57678466 57678732 -131600822 - L3 LINE CR1 -187 1390 1128 350 219 24 12 chr6 57678845 57678927 -131600627 + MIR SINE MIR 178 260 -2 695 259 147 18 chr6 57679303 57679527 -131600027 - MIR SINE MIR -8 254 2 4619 187 43 47 chr6 57679564 57680713 -131598841 - L1MC1 LINE L1 -30 6303 5164 2195 113 0 0 chr6 57680713 57680996 -131598558 - AluSg SINE Alu -23 287 5 4619 187 43 47 chr6 57680996 57681770 -131597784 - L1MC1 LINE L1 -1169 5164 4388 485 212 38 0 chr6 57681764 57681896 -131597658 - L1M4 LINE L1 -814 5332 5196 * 715 208 30 25 chr6 57681913 57682110 -131597444 - L1MC4 LINE L1 -1373 6669 6472 2010 152 3 0 chr6 57682284 57682581 -131596973 + AluJb SINE Alu 1 298 -14 670 298 100 65 chr6 57682586 57683016 -131596538 - L3 LINE CR1 -510 1067 623 2362 85 0 10 chr6 57683349 57683655 -131595899 + AluSc SINE Alu 3 305 -4 598 224 32 16 chr6 57683682 57683807 -131595747 - L2 LINE L2 0 3313 3187 200 200 0 25 chr6 57683992 57684032 -131595522 - L3 LINE CR1 -7 1570 1532 232 339 80 9 chr6 57684222 57684334 -131595220 - MIR SINE MIR -26 236 117 619 264 109 10 chr6 57684756 57684957 -131594597 - MIR SINE MIR -10 252 32 303 279 45 45 chr6 57685171 57685282 -131594272 - MIR SINE MIR -67 141 31 1437 214 22 9 chr6 57685848 57686170 -131593384 - MER90 LTR ERV1 0 614 289 214 195 0 0 chr6 57686657 57686698 -131592856 + A-rich Low_complexity Low_complexity 1 41 0 710 170 22 22 chr6 57687307 57687442 -131592112 + MER5A DNA MER1_type 47 181 -8 819 259 16 0 chr6 57687444 57687633 -131591921 - MIR SINE MIR -41 221 30 216 309 74 62 chr6 57687930 57688011 -131591543 - MER5A DNA MER1_type -48 141 60 312 27 0 0 chr6 57688667 57688704 -131590850 + (CA)n Simple_repeat Simple_repeat 2 38 0 427 249 114 78 chr6 57689006 57689199 -131590355 + MIR3 SINE MIR 6 205 -3 239 341 11 11 chr6 57690163 57690254 -131589300 - MIR SINE MIR -21 241 151 444 275 168 10 chr6 57690393 57690588 -131588966 + MIR SINE MIR 32 254 -8 683 176 176 0 chr6 57690735 57690888 -131588666 + MER5A DNA MER1_type 4 183 -6 359 301 23 69 chr6 57691192 57691454 -131588100 + MER112 DNA MER1_type 1 250 -10 240 200 15 46 chr6 57691536 57691601 -131587953 + L2 LINE L2 3210 3272 0 526 268 121 15 chr6 57692425 57692623 -131586931 + MIR SINE MIR 44 262 0 964 203 44 4 chr6 57692763 57693014 -131586540 + L1MD3 LINE L1 7735 7995 0 315 265 235 41 chr6 57693448 57693644 -131585910 + MIR SINE MIR 20 253 -9 421 304 60 37 chr6 57693835 57694052 -131585502 + MIR SINE MIR 28 249 -13 527 283 70 39 chr6 57694062 57694348 -131585206 + MLT1L LTR MaLR 10 304 -311 490 205 27 0 chr6 57694488 57694600 -131584954 + MLT1L LTR MaLR 500 614 -1 311 242 50 30 chr6 57694619 57694718 -131584836 - MIR SINE MIR -97 165 65 401 288 49 51 chr6 57695412 57695618 -131583936 - MIR SINE MIR -41 221 17 399 279 46 69 chr6 57696026 57696288 -131583266 + MER102a DNA MER1_type 75 330 0 302 262 56 0 chr6 57696293 57696419 -131583135 + L1ME4a LINE L1 5987 6119 -2 887 328 127 32 chr6 57696433 57696558 -131582996 + L3 LINE CR1 839 951 -626 180 0 0 0 chr6 57696558 57696578 -131582976 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 887 328 127 32 chr6 57696578 57697049 -131582505 + L3 LINE CR1 951 1492 -85 464 230 168 25 chr6 57697894 57698090 -131581464 - MIR SINE MIR -14 248 25 26 30 0 0 chr6 57698403 57698436 -131581118 + AT_rich Low_complexity Low_complexity 1 33 0 329 214 86 114 chr6 57698716 57698996 -131580558 + L1ME4a LINE L1 5850 6121 0 595 245 75 7 chr6 57699010 57699157 -131580397 - MIR SINE MIR 0 262 106 1549 140 0 9 chr6 57699680 57699908 -131579646 - AluSg/x SINE Alu -16 296 71 318 0 62 31 chr6 57700143 57700207 -131579347 + (TA)n Simple_repeat Simple_repeat 2 67 0 331 96 75 21 chr6 57700207 57700301 -131579253 + (TTATA)n Simple_repeat Simple_repeat 4 102 0 669 65 71 0 chr6 57700301 57700469 -131579085 + (TA)n Simple_repeat Simple_repeat 1 180 0 678 99 51 10 chr6 57700487 57700784 -131578770 + (TA)n Simple_repeat Simple_repeat 1 309 0 323 248 67 9 chr6 57700850 57700955 -131578599 - L1ME4a LINE L1 -38 6083 5973 262 231 15 0 chr6 57701104 57701169 -131578385 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 4434 162 30 34 chr6 57701197 57702093 -131577461 - L1MA9 LINE L1 -7 6305 5413 24 53 0 0 chr6 57702168 57702206 -131577348 + AT_rich Low_complexity Low_complexity 1 38 0 415 186 21 0 chr6 57702322 57702419 -131577135 + CT-rich Low_complexity Low_complexity 4 102 0 669 269 46 18 chr6 57702832 57703051 -131576503 + MLT1J LTR MaLR 26 250 -261 23 68 0 0 chr6 57703188 57703232 -131576322 + AT_rich Low_complexity Low_complexity 1 44 0 396 59 0 0 chr6 57703280 57703331 -131576223 + (TG)n Simple_repeat Simple_repeat 2 52 0 353 307 85 32 chr6 57704763 57705046 -131574508 + L1ME4a LINE L1 5813 6110 -11 262 260 22 29 chr6 57705240 57705323 -131574231 + MIR SINE MIR 78 164 -44 405 96 0 27 chr6 57705323 57705396 -131574158 - L1PA7 LINE L1 0 6154 6084 262 260 22 29 chr6 57705396 57705416 -131574138 + MIR SINE MIR 164 183 -25 2147 128 0 13 chr6 57706260 57706573 -131572981 - AluSx SINE Alu -3 309 1 351 304 119 24 chr6 57706906 57707074 -131572480 - MIR3 SINE MIR -10 198 15 384 250 28 37 chr6 57708060 57708168 -131571386 - MIR SINE MIR -91 171 65 203 88 29 0 chr6 57708243 57708277 -131571277 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 4690 69 31 0 chr6 57708530 57709151 -131570403 - L1PA13 LINE L1 0 6163 5524 235 302 47 0 chr6 57709279 57709365 -131570189 + MER103 DNA DNA 13 102 -64 189 171 0 0 chr6 57709399 57709434 -131570120 + T-rich Low_complexity Low_complexity 1 35 0 225 291 172 66 chr6 57709733 57709960 -131569594 + L2 LINE L2 3035 3291 -22 198 71 0 0 chr6 57709960 57709988 -131569566 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 259 293 40 0 chr6 57709988 57710063 -131569491 - L2 LINE L2 -13 3300 3223 23 54 0 0 chr6 57710159 57710196 -131569358 + AT_rich Low_complexity Low_complexity 1 37 0 446 360 59 11 chr6 57710271 57710457 -131569097 - MIR SINE MIR -48 214 20 1238 254 58 39 chr6 57712580 57712990 -131566564 - MLT1J2 LTR MaLR -9 441 24 30 0 0 0 chr6 57713306 57713336 -131566218 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr6 57713407 57713428 -131566126 + (GA)n Simple_repeat Simple_repeat 1 21 0 751 213 26 0 chr6 57714126 57714281 -131565273 + MIR SINE MIR 17 175 -87 189 266 13 63 chr6 57715527 57715606 -131563948 - MIR3 SINE MIR -9 199 125 188 309 113 0 chr6 57716001 57716098 -131563456 + MIR SINE MIR 154 261 -1 2132 110 10 0 chr6 57716274 57716566 -131562988 - AluSq SINE Alu -18 295 1 631 167 0 0 chr6 57717155 57717269 -131562285 - L1MB8 LINE L1 -2 6176 6063 1916 9 0 0 chr6 57717278 57717498 -131562056 - L1PA3 LINE L1 -1379 4767 4548 7741 23 0 1 chr6 57717498 57718894 -131560660 + L1PA3 LINE L1 4759 6155 0 894 157 13 0 chr6 57718911 57719070 -131560484 - L1MA9 LINE L1 -184 6128 5968 558 161 59 0 chr6 57719070 57719188 -131560366 + L1MA9 LINE L1 6118 6242 -70 3339 167 28 53 chr6 57719212 57719440 -131560114 - L1MB7 LINE L1 -147 6037 5805 509 71 47 35 chr6 57719440 57719525 -131560029 - L1MC1 LINE L1 0 6333 6248 3339 167 28 53 chr6 57719525 57720057 -131559497 - L1MB7 LINE L1 -379 5805 5296 1274 172 52 23 chr6 57720065 57720373 -131559181 - L1MB7 LINE L1 -947 5199 4883 364 358 16 16 chr6 57720380 57720503 -131559051 - MIR3 SINE MIR -76 132 10 3166 175 27 14 chr6 57720612 57721064 -131558490 - L1 LINE L1 -1177 4969 4504 2171 117 6 22 chr6 57721064 57721380 -131558174 - AluSx SINE Alu -1 311 1 3166 175 27 14 chr6 57721380 57721585 -131557969 - L1 LINE L1 -1642 4504 4303 4657 139 29 32 chr6 57721604 57722482 -131557072 + L1MA7 LINE L1 5417 6291 0 284 359 134 9 chr6 57722671 57722902 -131556652 - MIR SINE MIR 0 262 3 393 239 158 84 chr6 57723297 57723594 -131555960 - MLT1I LTR MaLR -8 401 83 679 209 43 0 chr6 57724753 57724892 -131554662 - FRAM SINE Alu -21 155 11 784 298 43 0 chr6 57725023 57725151 -131554403 + MIR SINE MIR 18 160 -102 180 0 0 0 chr6 57725151 57725171 -131554383 + (CAA)n Simple_repeat Simple_repeat 2 21 0 784 298 43 0 chr6 57725171 57725250 -131554304 + MIR SINE MIR 160 234 -28 13505 166 143 5 chr6 57725255 57727921 -131551633 + L1MA2 LINE L1 124 3156 -4409 * 13730 153 29 21 chr6 57727912 57729384 -131550170 + L1MA2 LINE L1 3950 5408 -2315 2099 127 3 3 chr6 57729384 57729684 -131549870 + AluSg SINE Alu 5 304 -6 13730 153 29 21 chr6 57729684 57731704 -131547850 + L1MA2 LINE L1 5408 7475 -248 207 0 0 0 chr6 57731704 57731727 -131547827 + (CA)n Simple_repeat Simple_repeat 2 24 0 13730 153 29 21 chr6 57731727 57731979 -131547575 + L1MA2 LINE L1 7475 7723 0 1384 148 3 94 chr6 57732044 57732341 -131547213 + AluJb SINE Alu 15 284 -28 445 369 87 9 chr6 57732982 57733315 -131546239 + LTR16C LTR ERVL 133 491 0 186 343 56 46 chr6 57734264 57734372 -131545182 - L2 LINE L2 -6 3266 3158 24 0 0 0 chr6 57734494 57734518 -131545036 + AT_rich Low_complexity Low_complexity 1 24 0 371 138 12 268 chr6 57737278 57737359 -131542195 + MER5A DNA MER1_type 1 4294967272 -213 1317 139 163 16 chr6 57737359 57737617 -131541937 + AluSg SINE Alu 1 296 -4 371 138 12 268 chr6 57737617 57737789 -131541765 + MER5A DNA MER1_type -25 189 0 192 211 42 99 chr6 57737729 57737800 -131541754 - MER5A DNA MER1_type -116 73 7 * 248 200 156 33 chr6 57738572 57738662 -131540892 + MIR SINE MIR 150 250 -12 988 188 0 67 chr6 57738688 57738911 -131540643 - MER3 DNA MER1_type 0 209 2 239 271 71 26 chr6 57739036 57739191 -131540363 - Charlie7 DNA MER1_type -17 2595 2434 315 85 0 0 chr6 57739587 57739634 -131539920 + (CA)n Simple_repeat Simple_repeat 2 48 0 217 352 14 0 chr6 57739966 57740037 -131539517 + L2 LINE L2 3201 3272 0 240 316 0 51 chr6 57740183 57740262 -131539292 + L2 LINE L2 3129 3203 -69 1774 280 116 57 chr6 57740652 57741917 -131537637 + L1MEc LINE L1 37 1226 -5170 2000 148 0 7 chr6 57741917 57742214 -131537340 + AluSx SINE Alu 3 297 -15 2231 114 7 0 chr6 57742214 57742519 -131537035 + AluSg1 SINE Alu 1 308 -1 1774 280 116 57 chr6 57742519 57742713 -131536841 + L1MEc LINE L1 1225 1583 -4813 1837 136 136 36 chr6 57742756 57743145 -131536409 - MSTA LTR MaLR 0 428 1 2349 94 0 0 chr6 57743272 57743571 -131535983 + AluSc SINE Alu 1 299 -10 189 0 0 0 chr6 57744417 57744438 -131535116 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 334 300 74 7 chr6 57744439 57744678 -131534876 - L2 LINE L2 -17 3296 2988 1986 269 66 48 chr6 57744734 57745517 -131534037 - L2 LINE L2 -552 2762 1966 1337 182 63 13 chr6 57746425 57746576 -131532978 + L1MA8 LINE L1 5968 6110 -181 2150 107 7 0 chr6 57746576 57746877 -131532677 - AluSx SINE Alu 0 305 3 1337 182 63 13 chr6 57746877 57747026 -131532528 + L1MA8 LINE L1 6110 6284 -7 820 163 0 0 chr6 57747042 57747165 -131532389 + AluSq/x SINE Alu 1 123 -189 227 30 0 30 chr6 57747165 57747198 -131532356 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 819 83 0 8 chr6 57748646 57748767 -131530787 + (TTTTA)n Simple_repeat Simple_repeat 1 180 0 1950 137 0 14 chr6 57748767 57749052 -131530502 - AluSx SINE Alu -31 281 1 1093 159 28 0 chr6 57749572 57749754 -131529800 - MER5A DNA MER1_type -2 187 1 285 361 0 0 chr6 57749963 57750096 -131529458 + A-rich Low_complexity Low_complexity 1 133 0 2875 124 27 14 chr6 57750096 57750578 -131528976 + LTR45B LTR ERV1 2 489 0 2169 126 16 49 chr6 57750827 57751215 -131528339 - THE1C LTR MaLR 0 375 1 30 27 0 0 chr6 57751337 57751374 -131528180 + AT_rich Low_complexity Low_complexity 1 37 0 258 231 0 0 chr6 57751391 57751456 -131528098 + (CATATA)n Simple_repeat Simple_repeat 3 67 0 3989 163 42 22 chr6 57751456 57752227 -131527327 - L1MA9 LINE L1 -76 7257 6472 1365 220 58 21 chr6 57752229 57752660 -131526894 - MER65B LTR ERV1 -5 526 1 12540 223 45 31 chr6 57752660 57755081 -131524473 - L1MA9 LINE L1 -724 6477 4092 2030 181 73 2 chr6 57755081 57755479 -131524075 - MSTB LTR MaLR 0 426 1 12540 223 45 31 chr6 57755479 57758177 -131521377 - L1MA9 LINE L1 -3109 4092 1579 418 323 71 62 chr6 57758510 57758990 -131520564 - MLT1K LTR MaLR -3 585 102 14450 229 42 33 chr6 57759411 57760456 -131519098 + L1PA15 LINE L1 1 1034 -5782 2353 161 16 19 chr6 57760456 57760885 -131518669 - MSTA LTR MaLR 0 428 1 14450 229 42 33 chr6 57760885 57765682 -131513872 + L1PA15 LINE L1 1034 6440 -376 1768 163 24 10 chr6 57765682 57765977 -131513577 + AluJo SINE Alu 1 299 -13 14450 229 42 33 chr6 57765977 57766358 -131513196 + L1PA15 LINE L1 6440 6816 0 312 310 60 17 chr6 57767354 57767470 -131512084 + L2 LINE L2 3152 3272 0 456 51 0 0 chr6 57769879 57769938 -131509616 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 513 256 45 65 chr6 57770194 57770393 -131509161 - MLT1L LTR MaLR 0 615 421 25 0 0 0 chr6 57770824 57770849 -131508705 + AT_rich Low_complexity Low_complexity 1 25 0 353 316 43 0 chr6 57770946 57771063 -131508491 + L2 LINE L2 3192 3313 0 196 403 97 8 chr6 57772081 57772205 -131507349 + L3b LINE CR1 1448 1582 -1 44 46 0 0 chr6 57772816 57772881 -131506673 + AT_rich Low_complexity Low_complexity 1 65 0 1808 162 7 7 chr6 57773728 57774024 -131505530 + AluJo SINE Alu 2 297 -15 25 51 0 0 chr6 57775098 57775137 -131504417 + AT_rich Low_complexity Low_complexity 1 39 0 388 264 73 41 chr6 57775174 57775489 -131504065 - L1ME4a LINE L1 -38 6083 5759 23 0 0 0 chr6 57775868 57775891 -131503663 + AT_rich Low_complexity Low_complexity 1 23 0 888 168 18 31 chr6 57776051 57776277 -131503277 + Charlie1 DNA MER1_type 2538 2760 -1 541 268 11 11 chr6 57777009 57777199 -131502355 + L1ME4a LINE L1 5636 5825 -296 1979 131 0 0 chr6 57777230 57777498 -131502056 + AluSx SINE Alu 1 268 -44 497 138 43 21 chr6 57777976 57778070 -131501484 + AluSg/x SINE Alu 214 309 0 2531 141 33 22 chr6 57778855 57780452 -131499102 + L1MA8 LINE L1 4595 6290 -1 368 234 170 7 chr6 57782670 57782811 -131496743 - MER103 DNA DNA 0 166 3 220 230 40 68 chr6 57783385 57783459 -131496095 + MIR SINE MIR 184 255 -7 724 310 33 41 chr6 57784143 57784537 -131495017 + L2 LINE L2 2088 2478 -836 2648 224 37 88 chr6 57784542 57784673 -131494881 + MER21B LTR ERV1 1 137 -726 1865 155 30 3 chr6 57784673 57784976 -131494578 - AluSx SINE Alu 0 312 2 2648 224 37 88 chr6 57784976 57785703 -131493851 + MER21B LTR ERV1 137 815 -48 489 333 139 9 chr6 57785708 57786032 -131493522 + L2 LINE L2 2456 2821 -493 * 690 239 22 31 chr6 57786023 57786215 -131493339 + MIR SINE MIR 55 243 -19 333 0 0 0 chr6 57786222 57786259 -131493295 + (TTA)n Simple_repeat Simple_repeat 2 38 0 956 78 0 0 chr6 57786259 57786374 -131493180 - AluSq/x SINE Alu -195 118 4 502 335 185 9 chr6 57786375 57786700 -131492854 + L2 LINE L2 2926 3307 -6 276 77 0 0 chr6 57786700 57786739 -131492815 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 1062 165 28 6 chr6 57786898 57787080 -131492474 - MER5A DNA MER1_type -1 188 3 1153 122 6 0 chr6 57787089 57787245 -131492309 + AluSp SINE Alu 3 159 -154 222 37 0 0 chr6 57787246 57787273 -131492281 + (A)n Simple_repeat Simple_repeat 1 27 0 835 204 115 0 chr6 57787688 57787761 -131491793 + MER58A DNA MER1_type 4 67 -2353 1867 133 61 123 chr6 57787761 57788256 -131491298 + MER4C LTR ERV1 1 464 -1 835 204 115 0 chr6 57788256 57788373 -131491181 + MER58A DNA MER1_type 67 216 -8 843 276 28 8 chr6 57788718 57788972 -131490582 + Charlie2a DNA MER1_type 53 311 -2551 278 262 24 0 chr6 57788984 57789068 -131490486 + Charlie2a DNA MER1_type 569 654 -2208 766 180 12 36 chr6 57789152 57789319 -131490235 + Charlie2a DNA MER1_type 1466 1628 -1234 427 253 0 40 chr6 57789357 57789463 -131490091 + Charlie2a DNA MER1_type 2719 2819 -43 1374 130 9 35 chr6 57789463 57789694 -131489860 + MER30 DNA MER1_type 5 229 -1 427 253 0 40 chr6 57789694 57789737 -131489817 + Charlie2a DNA MER1_type 2819 2862 0 24 0 0 0 chr6 57790013 57790037 -131489517 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 57790817 57790846 -131488708 + AT_rich Low_complexity Low_complexity 1 29 0 194 299 35 46 chr6 57791406 57791493 -131488061 - L2 LINE L2 0 3272 3187 245 314 59 8 chr6 57791565 57791683 -131487871 - MIR SINE MIR -137 125 2 252 86 0 0 chr6 57792021 57792056 -131487498 + (CA)n Simple_repeat Simple_repeat 2 36 0 34 24 0 0 chr6 57793064 57793105 -131486449 + AT_rich Low_complexity Low_complexity 1 41 0 2369 100 3 0 chr6 57793159 57793470 -131486084 - AluSq SINE Alu -1 312 1 2279 62 6 52 chr6 57793675 57793999 -131485555 + AluY SINE Alu 1 309 -2 1824 152 7 18 chr6 57794916 57795199 -131484355 - AluJo SINE Alu -30 282 3 322 296 72 40 chr6 57795285 57795437 -131484117 - L1M4 LINE L1 -1550 4596 4440 22 0 0 0 chr6 57797249 57797271 -131482283 + AT_rich Low_complexity Low_complexity 1 22 0 181 313 0 42 chr6 57797913 57797961 -131481593 - MIR SINE MIR -168 94 49 36 0 0 0 chr6 57798533 57798569 -131480985 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr6 57798613 57798646 -131480908 + AT_rich Low_complexity Low_complexity 1 33 0 227 128 0 0 chr6 57798837 57798876 -131480678 - MADE1 DNA Mariner -38 42 4 670 264 0 48 chr6 57799242 57799450 -131480104 - LTR67 LTR ERVL -2 555 358 412 325 103 36 chr6 57799548 57799742 -131479812 - LTR67 LTR ERVL -332 225 19 376 274 30 0 chr6 57799755 57799923 -131479631 + (TA)n Simple_repeat Simple_repeat 2 174 0 277 281 72 33 chr6 57800372 57800525 -131479029 + L2 LINE L2 2932 3090 -223 359 179 38 9 chr6 57800553 57800659 -131478895 + CT-rich Low_complexity Low_complexity 4 112 0 753 218 0 0 chr6 57800670 57800840 -131478714 + CT-rich Low_complexity Low_complexity 2 171 0 1154 205 111 8 chr6 57800841 57801085 -131478469 - AluJo SINE Alu -39 273 5 448 249 47 93 chr6 57801088 57801281 -131478273 + L2 LINE L2 3130 3313 0 502 307 48 0 chr6 57801287 57801453 -131478101 - L2 LINE L2 -430 2884 2711 607 333 64 0 chr6 57802196 57802415 -131477139 + MIR SINE MIR 30 262 0 596 317 57 18 chr6 57802689 57802916 -131476638 - MIR SINE MIR -4 258 23 23 0 0 0 chr6 57803290 57803313 -131476241 + AT_rich Low_complexity Low_complexity 1 23 0 883 248 86 30 chr6 57803348 57803687 -131475867 + MER74B LTR ERVL 110 467 -155 285 318 86 73 chr6 57803868 57804183 -131475371 - L2 LINE L2 -4 3309 2991 269 351 43 21 chr6 57804329 57804423 -131475131 + L2 LINE L2 3163 3258 -14 4214 230 14 24 chr6 57804511 57805612 -131473942 + L1M4 LINE L1 1 1091 -5451 381 237 0 0 chr6 57805640 57805716 -131473838 - Tigger5 DNA MER2_type -2247 76 1 1811 240 41 33 chr6 57805728 57806591 -131472963 + L1M4 LINE L1 1103 4363 -2281 1327 237 7 0 chr6 57806595 57806890 -131472664 + L1MB7 LINE L1 5861 6157 -27 27 0 0 0 chr6 57806895 57806922 -131472632 + AT_rich Low_complexity Low_complexity 1 27 0 895 179 32 6 chr6 57807014 57807170 -131472384 + FRAM SINE Alu 1 152 -24 936 211 70 123 chr6 57807708 57808254 -131471300 + MLT2B1 LTR ERVL 1 517 -3 22 35 0 0 chr6 57809119 57809148 -131470406 + AT_rich Low_complexity Low_complexity 1 29 0 233 246 49 0 chr6 57809724 57809785 -131469769 + MIR3 SINE MIR 92 155 -53 239 165 134 0 chr6 57811252 57811318 -131468236 - MIR3 SINE MIR -36 172 93 1771 156 55 27 chr6 57811464 57811829 -131467725 - THE1C LTR MaLR 0 375 1 2427 81 0 0 chr6 57811966 57812263 -131467291 - AluY SINE Alu -3 308 12 22 35 0 0 chr6 57812301 57812330 -131467224 + AT_rich Low_complexity Low_complexity 1 29 0 628 289 91 25 chr6 57813446 57813686 -131465868 - MIR SINE MIR -6 256 3 1107 128 0 12 chr6 57814503 57814694 -131464860 + AluSg/x SINE Alu 132 310 0 301 304 134 25 chr6 57814917 57815118 -131464436 - MIR SINE MIR 0 262 40 1102 217 4 38 chr6 57815785 57816025 -131463529 + MIR SINE MIR 5 236 -26 349 263 8 42 chr6 57816538 57816656 -131462898 - MIR SINE MIR 0 262 149 1659 166 60 14 chr6 57816673 57817022 -131462532 - MER65A LTR ERV1 -35 410 46 975 153 58 5 chr6 57817022 57817212 -131462342 - L1PA13 LINE L1 0 6163 5964 682 251 0 36 chr6 57817212 57817379 -131462175 - MIR SINE MIR -100 162 2 239 325 12 0 chr6 57817631 57817714 -131461840 + MIR SINE MIR 174 257 -5 24 0 0 0 chr6 57818100 57818124 -131461430 + AT_rich Low_complexity Low_complexity 1 24 0 2316 105 0 0 chr6 57818133 57818429 -131461125 + AluSg SINE Alu 1 296 -14 2073 120 71 31 chr6 57818615 57818965 -131460589 + THE1B LTR MaLR 1 364 0 2474 92 0 6 chr6 57819064 57819378 -131460176 - AluSx SINE Alu 0 312 1 435 213 331 0 chr6 57819805 57819941 -131459613 - MIR SINE MIR -43 219 39 340 248 44 18 chr6 57819926 57820039 -131459515 + MER5B DNA MER1_type 62 177 -1 * 1688 156 0 37 chr6 57820099 57820419 -131459135 - AluJo SINE Alu 0 309 1 312 225 0 42 chr6 57820421 57820492 -131459062 - MER5A DNA MER1_type -119 70 3 185 259 103 69 chr6 57820725 57820841 -131458713 + MIR SINE MIR 111 230 -32 937 258 13 20 chr6 57821467 57821765 -131457789 + MLT1A1 LTR MaLR 2 297 -68 651 188 21 7 chr6 57821759 57821903 -131457651 + MLT1A1 LTR MaLR 220 365 0 * 291 54 0 0 chr6 57822884 57822921 -131456633 + (CAA)n Simple_repeat Simple_repeat 3 39 0 247 88 0 0 chr6 57823867 57823901 -131455653 + Alu SINE Alu 255 288 -11 1977 141 14 0 chr6 57824389 57824686 -131454868 + AluSx SINE Alu 1 301 -11 251 282 51 0 chr6 57824933 57825011 -131454543 + L2 LINE L2 2979 3060 -212 1205 154 0 15 chr6 57825174 57825375 -131454179 - L1PA16 LINE L1 -9 6157 5960 256 312 55 0 chr6 57825724 57825833 -131453721 + L1ME LINE L1 5520 5634 -487 26 30 0 0 chr6 57827118 57827151 -131452403 + AT_rich Low_complexity Low_complexity 1 33 0 834 306 136 17 chr6 57827201 57827671 -131451883 + L2 LINE L2 1156 1681 -1633 793 238 68 8 chr6 57827690 57827955 -131451599 + Charlie4 DNA MER1_type 39 319 -1642 2371 169 23 4 chr6 57828455 57828927 -131450627 - L1MD1 LINE L1 0 6242 5762 711 178 20 26 chr6 57828944 57829096 -131450458 + FRAM SINE Alu 17 167 -9 5639 231 72 26 chr6 57829104 57831732 -131447822 - L1MD1 LINE L1 -486 5756 3002 452 221 37 0 chr6 57831781 57831933 -131447621 + L1M4 LINE L1 2231 2387 -3759 1285 73 21 3 chr6 57832265 57832477 -131447077 - L1P LINE L1 -743 5403 5208 * 3271 33 0 0 chr6 57832476 57832875 -131446679 + L1P2 LINE L1 5400 5798 -356 279 326 65 36 chr6 57833325 57833463 -131446091 - L2 LINE L2 -4 3268 3127 572 277 208 15 chr6 57833878 57834214 -131445340 + L2 LINE L2 2907 3307 -6 1279 186 37 6 chr6 57835170 57835562 -131443992 - L1MC/D LINE L1 -743 5403 5176 1420 68 0 21 chr6 57835889 57836080 -131443474 + L1PA7 LINE L1 5968 6154 0 21 71 0 0 chr6 57836749 57836791 -131442763 + AT_rich Low_complexity Low_complexity 1 42 0 198 0 0 0 chr6 57836987 57837009 -131442545 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 318 316 110 76 chr6 57838355 57838855 -131440699 - L1M2 LINE L1 -5888 961 445 1081 51 0 0 chr6 57841425 57841563 -131437991 + L1PA5 LINE L1 6016 6153 -1 359 298 63 47 chr6 57841971 57842162 -131437392 - MLT1E LTR MaLR -162 431 238 467 228 0 10 chr6 57842213 57842314 -131437240 - MLT1E LTR MaLR -438 155 56 1495 213 29 24 chr6 57842917 57842994 -131436560 - LTR52 LTR ERVL -3 418 343 354 45 0 0 chr6 57842994 57843038 -131436516 + (CA)n Simple_repeat Simple_repeat 2 45 0 1495 213 29 24 chr6 57843038 57843369 -131436185 - LTR52 LTR ERVL -78 343 8 1823 165 0 49 chr6 57843369 57843696 -131435858 - AluJo SINE Alu 0 312 2 420 265 92 84 chr6 57843858 57844474 -131435080 + L1ME4a LINE L1 5452 6072 -49 306 293 110 103 chr6 57845882 57846309 -131433245 + L1M2 LINE L1 981 1410 -5439 312 48 0 0 chr6 57848413 57848455 -131431099 + (T)n Simple_repeat Simple_repeat 1 42 0 315 0 0 0 chr6 57849098 57849133 -131430421 + (T)n Simple_repeat Simple_repeat 1 35 0 416 316 36 14 chr6 57849171 57849310 -131430244 + MER5A DNA MER1_type 46 187 -2 2256 108 0 19 chr6 57849728 57849907 -131429647 - AluSx SINE Alu -3 309 137 1748 127 8 0 chr6 57849907 57850143 -131429411 - AluSg SINE Alu -12 298 61 2256 108 0 19 chr6 57850143 57850278 -131429276 - AluSx SINE Alu -175 137 1 358 268 42 87 chr6 57850315 57850443 -131429111 + L1MC4 LINE L1 7790 7922 -120 1719 198 0 0 chr6 57850443 57850731 -131428823 + AluJo SINE Alu 1 288 -24 2263 111 3 0 chr6 57850741 57851048 -131428506 + AluSq SINE Alu 1 308 -5 358 268 42 87 chr6 57851048 57851173 -131428381 + L1MC4 LINE L1 7931 8042 0 24 67 0 0 chr6 57851246 57851291 -131428263 + AT_rich Low_complexity Low_complexity 1 45 0 241 246 79 44 chr6 57852058 57852172 -131427382 - L2 LINE L2 -19 3253 3136 397 344 38 11 chr6 57852205 57852388 -131427166 - L2 LINE L2 -216 3056 2869 216 232 18 0 chr6 57852762 57852818 -131426736 + (TA)n Simple_repeat Simple_repeat 1 57 0 353 284 78 17 chr6 57852871 57852987 -131426567 + MIR SINE MIR 18 140 -122 2164 123 0 3 chr6 57853132 57853440 -131426114 + AluSx SINE Alu 2 308 -4 26 30 0 0 chr6 57853444 57853477 -131426077 + AT_rich Low_complexity Low_complexity 1 33 0 336 351 119 5 chr6 57853477 57853679 -131425875 + L2 LINE L2 2595 2819 -495 228 35 0 0 chr6 57853785 57853814 -131425740 + (TG)n Simple_repeat Simple_repeat 2 30 0 380 217 58 0 chr6 57853830 57853950 -131425604 + L1ME4a LINE L1 5305 5431 -2377 348 333 100 21 chr6 57853958 57854280 -131425274 + L1ME4a LINE L1 5532 5889 -254 350 267 59 74 chr6 57854533 57854735 -131424819 - L2 LINE L2 0 3313 3115 430 274 0 0 chr6 57854823 57854929 -131424625 + L1MC4a LINE L1 5506 5611 -510 505 233 60 0 chr6 57854949 57855082 -131424472 + L1MC4a LINE L1 5764 5904 -1904 729 253 87 8 chr6 57855153 57855394 -131424160 + MIR SINE MIR 2 261 -1 213 242 88 33 chr6 57856352 57856443 -131423111 + MIR SINE MIR 45 140 -122 627 286 90 8 chr6 57857301 57857535 -131422019 + MIR SINE MIR 5 257 -5 210 299 23 35 chr6 57857622 57857709 -131421845 - MIR SINE MIR -85 123 38 26 30 0 0 chr6 57858516 57858549 -131421005 + AT_rich Low_complexity Low_complexity 1 33 0 292 296 179 77 chr6 57858720 57858965 -131420589 + L2 LINE L2 2246 2465 -849 2473 60 0 3 chr6 57858965 57859263 -131420291 + AluY SINE Alu 2 298 -13 292 296 179 77 chr6 57859263 57859538 -131420016 + L2 LINE L2 2465 2819 -495 347 327 88 85 chr6 57859656 57859962 -131419592 + L2 LINE L2 2966 3272 0 331 292 82 115 chr6 57860168 57860569 -131418985 + L2 LINE L2 2232 2619 -695 722 302 135 46 chr6 57860582 57861463 -131418091 + L2 LINE L2 2271 3250 -63 198 411 0 8 chr6 57861484 57861608 -131417946 + L2 LINE L2 2646 2768 -546 1583 156 35 8 chr6 57861622 57861879 -131417675 + AluSx SINE Alu 1 264 -48 1857 100 36 7 chr6 57861986 57862267 -131417287 - AluY SINE Alu -22 289 1 225 196 0 0 chr6 57863172 57863218 -131416336 + (TATAA)n Simple_repeat Simple_repeat 3 48 0 239 346 122 14 chr6 57863358 57863572 -131415982 - L2 LINE L2 -211 3061 2825 952 291 54 42 chr6 57863688 57864135 -131415419 - L2 LINE L2 -696 2618 2167 304 343 83 0 chr6 57864289 57864397 -131415157 - L2 LINE L2 -30 3242 3126 489 281 107 25 chr6 57864436 57864632 -131414922 - MIR SINE MIR -16 246 35 432 333 142 32 chr6 57864738 57865351 -131414203 - L2 LINE L2 -212 3060 2366 570 337 30 5 chr6 57865460 57865662 -131413892 - MIR SINE MIR -54 208 2 183 227 0 45 chr6 57865714 57865758 -131413796 + L3 LINE CR1 1437 1478 -99 315 0 0 0 chr6 57869349 57869384 -131410170 + (TA)n Simple_repeat Simple_repeat 1 35 0 494 329 36 0 chr6 57869623 57869760 -131409794 - MIR3 SINE MIR -27 181 40 33 78 0 26 chr6 57870264 57870379 -131409175 + AT_rich Low_complexity Low_complexity 1 112 0 2451 70 3 0 chr6 57870607 57870907 -131408647 + AluY SINE Alu 1 301 -10 215 390 39 45 chr6 57871248 57871376 -131408178 + MIR3 SINE MIR 21 149 -59 1886 117 45 10 chr6 57871376 57871667 -131407887 + AluSx SINE Alu 4 304 -8 215 390 39 45 chr6 57871667 57871692 -131407862 + MIR3 SINE MIR 149 173 -35 1641 128 122 3 chr6 57873072 57873399 -131406155 + L1MB4 LINE L1 5812 6177 -3 3855 241 70 21 chr6 57873416 57874681 -131404873 + L1M4 LINE L1 3714 5039 -1107 258 298 132 0 chr6 57875152 57875266 -131404288 - MIR SINE MIR -55 207 79 1227 218 186 26 chr6 57875406 57875570 -131403984 - L1MD2 LINE L1 -2 6357 6221 261 0 0 0 chr6 57875570 57875599 -131403955 + (TG)n Simple_repeat Simple_repeat 2 30 0 1227 218 186 26 chr6 57875599 57875903 -131403651 - L1MD2 LINE L1 -138 6221 5814 1819 146 4 0 chr6 57877951 57878225 -131401329 - AluJb SINE Alu -3 309 35 23 33 0 0 chr6 57878757 57878787 -131400767 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 57878867 57878888 -131400666 + AT_rich Low_complexity Low_complexity 1 21 0 286 293 34 14 chr6 57878934 57879081 -131400473 - L1ME4a LINE L1 -100 6021 5872 241 353 150 0 chr6 57879986 57880139 -131399415 + L2 LINE L2 2565 2740 -574 336 286 0 11 chr6 57880211 57880302 -131399252 - L1MC4 LINE L1 -1339 6703 6614 * 361 298 0 0 chr6 57880270 57880364 -131399190 + L1MC4 LINE L1 6614 6707 -1335 2290 90 3 0 chr6 57880367 57880667 -131398887 - AluY SINE Alu -10 301 1 1845 164 0 3 chr6 57881360 57881647 -131397907 + AluJo SINE Alu 1 286 -26 25 51 0 0 chr6 57881647 57881686 -131397868 + AT_rich Low_complexity Low_complexity 1 39 0 263 264 31 37 chr6 57882088 57882251 -131397303 - L1ME4a LINE L1 -22 6099 5938 228 186 136 0 chr6 57882338 57882397 -131397157 - L1MDb LINE L1 -4846 1694 1628 691 270 22 60 chr6 57882404 57882770 -131396784 - L1MDb LINE L1 -5322 1208 841 358 292 43 102 chr6 57883299 57883624 -131395930 - L1MDb LINE L1 -6209 331 26 328 254 79 8 chr6 57883629 57883755 -131395799 - L1ME4a LINE L1 -294 5827 5693 624 304 34 38 chr6 57886277 57886514 -131393040 - MIR SINE MIR -16 246 11 315 304 143 0 chr6 57886560 57886721 -131392833 + MIR SINE MIR 68 251 -11 342 0 0 0 chr6 57888195 57888233 -131391321 + (TC)n Simple_repeat Simple_repeat 1 38 0 288 0 0 0 chr6 57888232 57888264 -131391290 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 266 297 158 30 chr6 57889558 57889824 -131389730 + L2 LINE L2 1878 2177 -1137 2720 122 26 2 chr6 57891117 57891535 -131388019 + MSTA LTR MaLR 1 428 0 260 172 32 21 chr6 57893296 57893389 -131386165 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 538 300 206 52 chr6 57893490 57893820 -131385734 - L2 LINE L2 -1 3271 2891 351 206 0 0 chr6 57894036 57894104 -131385450 - MER116 DNA Mariner 0 80 13 420 281 130 14 chr6 57894590 57894736 -131384818 + MIR SINE MIR 48 210 -52 336 284 14 0 chr6 57894834 57894908 -131384646 - MIR SINE MIR -186 76 2 750 270 29 25 chr6 57895642 57895846 -131383708 + MIR SINE MIR 50 254 -8 1002 228 34 0 chr6 57896221 57896427 -131383127 + MER20 DNA MER1_type 5 217 -2 427 270 132 32 chr6 57896433 57896613 -131382941 + MIR SINE MIR 13 211 -51 817 248 81 20 chr6 57896613 57896859 -131382695 + MIR SINE MIR 2 262 0 1196 192 27 9 chr6 57897067 57897286 -131382268 - MER58A DNA MER1_type 0 224 2 1322 294 40 16 chr6 57897471 57897917 -131381637 + LTR16B LTR ERVL 2 458 -6 2466 71 3 0 chr6 57898490 57898787 -131380767 - AluSp SINE Alu -14 299 2 749 206 46 27 chr6 57899049 57899274 -131380280 + MIR SINE MIR 17 250 -12 224 259 59 35 chr6 57901063 57901148 -131378406 - L2 LINE L2 -18 3254 3168 419 286 58 96 chr6 57901224 57901531 -131378023 + L2 LINE L2 2226 2504 -810 2348 96 0 19 chr6 57901531 57901844 -131377710 - AluSc SINE Alu -2 307 1 419 286 58 96 chr6 57901844 57902091 -131377463 + L2 LINE L2 2504 2759 -555 349 343 86 69 chr6 57902315 57902735 -131376819 + L2 LINE L2 2837 3263 -9 363 221 96 0 chr6 57903179 57903292 -131376262 + MER5A DNA MER1_type 5 129 -60 311 344 82 20 chr6 57903445 57903640 -131375914 + MIR SINE MIR 53 259 -3 2201 110 0 23 chr6 57904869 57905177 -131374377 - AluSx SINE Alu -11 301 1 180 344 104 10 chr6 57905183 57905279 -131374275 - L2 LINE L2 -18 3254 3150 181 250 0 0 chr6 57907120 57907160 -131372394 + MIR SINE MIR 220 259 -3 232 316 114 9 chr6 57907252 57907366 -131372188 + L2 LINE L2 3188 3313 0 1251 277 82 52 chr6 57907511 57908221 -131371333 + L2 LINE L2 2582 3313 0 233 295 3 25 chr6 57908379 57908467 -131371087 + MLT1J2 LTR MaLR 67 142 -308 397 231 64 50 chr6 57908505 57908712 -131370842 + MLT1I LTR MaLR 239 403 -6 264 296 69 63 chr6 57908725 57908884 -131370670 - L2 LINE L2 -2 3270 3111 2098 123 7 3 chr6 57909067 57909360 -131370194 - AluSc SINE Alu -15 294 1 2014 152 76 32 chr6 57909660 57910186 -131369368 - MER39B LTR ERV1 -4 649 1 1962 136 14 0 chr6 57910482 57910762 -131368792 - AluSx SINE Alu -18 294 11 1960 193 48 75 chr6 57911340 57911857 -131367697 + MLT1D LTR MaLR 1 503 -2 1085 176 57 14 chr6 57912058 57912268 -131367286 + MER20 DNA MER1_type 1 219 0 438 339 70 0 chr6 57912679 57912850 -131366704 + MIR SINE MIR 2 184 -78 474 267 188 0 chr6 57913317 57913482 -131366072 - MIR SINE MIR -37 225 30 1258 138 37 37 chr6 57913482 57913700 -131365854 - MER20 DNA MER1_type -1 218 1 520 262 78 66 chr6 57913798 57914042 -131365512 + L3 LINE CR1 963 1209 -368 216 338 12 0 chr6 57914170 57914250 -131365304 + L3 LINE CR1 1437 1517 -60 789 251 33 97 chr6 57914303 57914602 -131364952 - MER102b DNA MER1_type -10 331 52 23 0 0 0 chr6 57915494 57915517 -131364037 + AT_rich Low_complexity Low_complexity 1 23 0 189 217 22 22 chr6 57915644 57915690 -131363864 - MIR SINE MIR -113 149 104 949 261 160 28 chr6 57915761 57916186 -131363368 + L2 LINE L2 2632 3158 -155 375 23 0 0 chr6 57916186 57916230 -131363324 + (CA)n Simple_repeat Simple_repeat 2 45 0 949 261 160 28 chr6 57916230 57916410 -131363144 + L2 LINE L2 3158 3313 0 648 138 11 22 chr6 57918134 57918315 -131361239 + GA-rich Low_complexity Low_complexity 2 180 0 2054 129 0 7 chr6 57918352 57918661 -131360893 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr6 57920037 57920062 -131359492 + AT_rich Low_complexity Low_complexity 1 25 0 619 296 45 18 chr6 57920127 57920350 -131359204 + MIR SINE MIR 30 258 -4 1134 106 39 17 chr6 57920783 57920962 -131358592 + MER53 DNA DNA 7 189 0 1919 173 0 19 chr6 57921236 57921554 -131358000 - AluJb SINE Alu 0 312 1 237 267 27 0 chr6 57921823 57921898 -131357656 + HAL1 LINE L1 1815 1891 -616 337 307 36 36 chr6 57922299 57922465 -131357089 + HAL1b LINE L1 746 911 -437 349 262 57 8 chr6 57922571 57922693 -131356861 + HAL1 LINE L1 2245 2372 -135 225 220 40 0 chr6 57922724 57922774 -131356780 + (TTGGGG)n Simple_repeat Simple_repeat 2 53 0 246 289 171 0 chr6 57923127 57923203 -131356351 + L2 LINE L2 3151 3239 -33 804 264 54 13 chr6 57923427 57923666 -131355888 + MIR SINE MIR 12 260 -2 211 277 11 11 chr6 57923667 57923706 -131355848 + (TA)n Simple_repeat Simple_repeat 1 39 -55 1879 199 86 33 chr6 57923706 57924193 -131355361 - LTR10D LTR ERV1 0 513 1 211 277 11 11 chr6 57924193 57924247 -131355307 + (TA)n Simple_repeat Simple_repeat 38 94 0 359 321 31 0 chr6 57925043 57925202 -131354352 - L1ME LINE L1 -357 5764 5601 183 308 76 58 chr6 57925311 57925483 -131354071 + L2 LINE L2 2721 2895 -419 756 305 35 4 chr6 57925518 57925777 -131353777 - LTR33 LTR ERVL -2 519 253 238 259 17 0 chr6 57925915 57925973 -131353581 - LTR33 LTR ERVL -462 59 1 283 128 0 0 chr6 57926909 57926956 -131352598 - MER41A LTR ERV1 -107 447 401 287 301 24 0 chr6 57926993 57927076 -131352478 + MIR SINE MIR 168 252 -10 239 349 111 0 chr6 57927242 57927368 -131352186 + MIR SINE MIR 5 144 -118 427 309 138 6 chr6 57927469 57927650 -131351904 + MIR SINE MIR 14 218 -44 269 320 24 16 chr6 57927904 57928029 -131351525 + MIR3 SINE MIR 79 204 -4 1347 72 0 0 chr6 57928423 57928603 -131350951 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1600 318 113 31 chr6 57929035 57930239 -131349315 + L2 LINE L2 1968 3308 -5 359 315 7 47 chr6 57930243 57930392 -131349162 + GA-rich Low_complexity Low_complexity 6 148 0 465 103 0 0 chr6 57930497 57930565 -131348989 + (TTCTCC)n Simple_repeat Simple_repeat 5 72 0 23 33 0 0 chr6 57930863 57930893 -131348661 + AT_rich Low_complexity Low_complexity 1 30 0 2652 184 37 4 chr6 57931436 57931974 -131347580 - L1MB7 LINE L1 0 6184 5629 628 217 4 4 chr6 57931974 57932227 -131347327 + L1M4 LINE L1 4716 5069 -1077 520 233 0 0 chr6 57932222 57932325 -131347229 - L1MB7 LINE L1 -1175 4971 4869 * 521 130 65 9 chr6 57932331 57932439 -131347115 - L1MB7 LINE L1 -1410 4736 4623 288 306 8 25 chr6 57932800 57932921 -131346633 + MER5B DNA MER1_type 60 178 0 352 246 280 0 chr6 57933004 57933122 -131346432 + MER5A DNA MER1_type 9 159 -30 280 238 48 0 chr6 57933131 57933194 -131346360 + MER58 DNA MER1_type 1 66 -149 336 172 125 0 chr6 57933728 57933792 -131345762 + MER58 DNA MER1_type 2349 2420 0 195 284 105 56 chr6 57933832 57933994 -131345560 + L2 LINE L2 2926 3095 -177 749 200 53 0 chr6 57934051 57934201 -131345353 - MER5A DNA MER1_type -5 184 27 2019 138 62 213 chr6 57934335 57935189 -131344365 - Charlie1a DNA MER1_type 0 1455 731 1471 229 43 12 chr6 57935187 57935515 -131344039 - Charlie1a DNA MER1_type -1116 339 2 * 262 308 161 0 chr6 57935597 57935727 -131343827 - MIR SINE MIR 0 262 112 201 39 0 0 chr6 57935744 57935770 -131343784 + (CTTA)n Simple_repeat Simple_repeat 3 28 0 2210 124 0 0 chr6 57936388 57936686 -131342868 - AluSx SINE Alu -14 298 1 359 362 97 0 chr6 57936698 57936883 -131342671 + MIR SINE MIR 53 255 -7 453 339 97 10 chr6 57937022 57937217 -131342337 - L2 LINE L2 -515 2799 2588 431 342 49 16 chr6 57937223 57937466 -131342088 - MIR SINE MIR -6 256 6 436 248 0 51 chr6 57938421 57938558 -131340996 + MIR3 SINE MIR 76 205 -3 945 159 45 6 chr6 57940054 57940230 -131339324 - L1MB2 LINE L1 -3 6168 5986 199 313 137 63 chr6 57940761 57941125 -131338429 + L2 LINE L2 1803 2193 -1121 275 302 63 16 chr6 57941909 57942035 -131337519 - L2 LINE L2 -6 3307 3176 351 194 51 20 chr6 57942447 57942545 -131337009 + L1ME4a LINE L1 6021 6121 0 1355 173 67 13 chr6 57943443 57943755 -131335799 + Charlie5 DNA MER1_type 2296 2624 0 421 125 23 11 chr6 57944293 57944381 -131335173 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 238 289 106 10 chr6 57944554 57944658 -131334896 + MIR SINE MIR 123 236 -26 438 267 69 0 chr6 57945042 57945173 -131334381 - MIR SINE MIR -38 224 85 632 261 58 14 chr6 57945199 57945406 -131334148 + MIR SINE MIR 41 256 -6 8071 29 0 0 chr6 57945944 57946856 -131332698 - L1PA4 LINE L1 -10 6145 5233 225 338 14 0 chr6 57947163 57947234 -131332320 - L2 LINE L2 -14 3258 3187 1476 160 55 124 chr6 57947382 57947801 -131331753 + MLT1B LTR MaLR 1 390 0 2019 132 3 0 chr6 57948611 57948929 -131330625 + AluSg SINE Alu 1 310 0 30 59 0 0 chr6 57948993 57949044 -131330510 + AT_rich Low_complexity Low_complexity 1 51 0 374 278 39 41 chr6 57949202 57949344 -131330210 - MIR SINE MIR -64 144 5 182 262 175 10 chr6 57949339 57949442 -131330112 + L2 LINE L2 2926 3045 -227 * 2007 143 7 7 chr6 57950046 57950353 -131329201 - AluSx SINE Alu -5 307 1 227 209 15 30 chr6 57950546 57950613 -131328941 + L1M4 LINE L1 4207 4272 -1874 5263 224 60 23 chr6 57950836 57953561 -131325993 + L1ME1 LINE L1 3292 6152 -14 394 304 58 18 chr6 57953723 57953894 -131325660 - MER5B DNA MER1_type 0 178 1 1026 220 66 70 chr6 57953941 57954410 -131325144 + Charlie4a DNA MER1_type 25 491 -17 2006 120 0 31 chr6 57954592 57954906 -131324648 + AluSx SINE Alu 1 305 0 354 83 0 0 chr6 57955105 57955153 -131324401 + Alu SINE Alu 1 48 -255 235 77 0 39 chr6 57955150 57955224 -131324330 + AluSp/q SINE Alu 254 325 0 * 180 152 0 0 chr6 57955490 57955523 -131324031 + (CA)n Simple_repeat Simple_repeat 2 34 0 323 274 59 66 chr6 57955751 57955933 -131323621 + MIR SINE MIR 2 187 -69 23 0 0 0 chr6 57956116 57956139 -131323415 + AT_rich Low_complexity Low_complexity 1 23 0 208 265 51 20 chr6 57956325 57956423 -131323131 + MIR SINE MIR 73 173 -89 629 321 5 5 chr6 57956468 57956655 -131322899 - MIR3 SINE MIR -19 189 3 984 226 39 0 chr6 57957604 57957861 -131321693 - L1MB7 LINE L1 -2 6182 5916 296 252 163 44 chr6 57957901 57958036 -131321518 - L2 LINE L2 0 3313 3163 270 308 130 60 chr6 57958248 57958595 -131320959 - L2 LINE L2 -376 2938 2568 6052 124 172 71 chr6 57958595 57960113 -131319441 + pTR5 LTR ERV1 768 2438 0 378 309 80 27 chr6 57960146 57960334 -131319220 + MIR SINE MIR 50 247 -15 379 222 11 0 chr6 57960489 57960579 -131318975 - Charlie4 DNA MER1_type -16 1945 1855 184 261 22 0 chr6 57960579 57960625 -131318929 - MER5B DNA MER1_type -130 48 2 818 310 114 35 chr6 57960708 57960884 -131318670 - L2 LINE L2 -4 3309 3148 1231 189 77 84 chr6 57960884 57961301 -131318253 - MLT2D LTR ERVL 0 414 1 818 310 114 35 chr6 57961301 57961841 -131317713 - L2 LINE L2 -165 3148 2525 1262 231 96 48 chr6 57962214 57962754 -131316800 - L1ME2 LINE L1 -9 6155 5590 204 226 19 0 chr6 57962871 57962924 -131316630 + (ATG)n Simple_repeat Simple_repeat 2 55 0 200 250 100 0 chr6 57962978 57963038 -131316516 - MIR SINE MIR -71 191 126 4985 114 33 8 chr6 57963042 57963532 -131316022 + L1PB1 LINE L1 5278 5754 -397 1032 156 0 0 chr6 57963532 57963712 -131315842 + (TA)n Simple_repeat Simple_repeat 1 180 0 4985 114 33 8 chr6 57963712 57963896 -131315658 + L1PB1 LINE L1 5754 5932 -219 2391 74 7 0 chr6 57963896 57964192 -131315362 + AluSc SINE Alu 1 298 -11 4985 114 33 8 chr6 57964192 57964369 -131315185 + L1PB1 LINE L1 5932 6151 0 478 140 25 6 chr6 57966090 57966247 -131313307 + (TTTAA)n Simple_repeat Simple_repeat 1 160 0 321 301 120 46 chr6 57966313 57966572 -131312982 - L2 LINE L2 -663 2651 2374 189 74 0 0 chr6 57966771 57966798 -131312756 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 260 338 68 8 chr6 57967376 57967509 -131312045 + MIR SINE MIR 21 161 -101 581 207 40 64 chr6 57967512 57967651 -131311903 - MLT1B LTR MaLR 0 390 249 2039 103 50 4 chr6 57967651 57967932 -131311622 - AluSc SINE Alu -15 294 1 581 207 40 64 chr6 57967932 57968108 -131311446 - MLT1B LTR MaLR -141 249 1 314 212 119 42 chr6 57968602 57968720 -131310834 + L1MC/D LINE L1 5614 5740 -2068 33 43 0 0 chr6 57969211 57969258 -131310296 + AT_rich Low_complexity Low_complexity 1 47 0 226 340 38 19 chr6 57970234 57970340 -131309214 - MIR SINE MIR -63 145 38 1338 214 67 17 chr6 57970355 57970711 -131308843 - L1ME1 LINE L1 -5 6161 5788 233 145 29 72 chr6 57970730 57970799 -131308755 - L1ME1 LINE L1 -347 5817 5752 517 252 8 8 chr6 57970841 57970960 -131308594 + L2 LINE L2 3139 3257 -15 192 40 0 0 chr6 57970961 57970986 -131308568 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 429 277 58 15 chr6 57971108 57971245 -131308309 + MIR SINE MIR 119 261 -1 21 0 0 0 chr6 57971542 57971563 -131307991 + AT_rich Low_complexity Low_complexity 1 21 0 184 376 30 30 chr6 57972079 57972212 -131307342 - L3b LINE CR1 -155 1428 1296 196 256 0 0 chr6 57972748 57972787 -131306767 + MER5A DNA MER1_type 53 91 -98 520 305 21 37 chr6 57972980 57973167 -131306387 + MER5A DNA MER1_type 1 184 -5 752 263 6 0 chr6 57973340 57973515 -131306039 + MIR SINE MIR 81 256 -6 767 213 106 24 chr6 57973588 57973795 -131305759 + MER58A DNA MER1_type 1 224 0 443 282 226 11 chr6 57974592 57974773 -131304781 - MIR SINE MIR -14 248 29 186 43 0 0 chr6 57975229 57975252 -131304302 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 572 237 128 19 chr6 57975623 57975728 -131303826 - MER63A DNA MER1_type -1515 173 44 186 43 0 0 chr6 57975728 57975751 -131303803 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 572 237 128 19 chr6 57975751 57975801 -131303753 - MER63A DNA MER1_type -1644 44 1 336 368 78 0 chr6 57975804 57975997 -131303557 - L1ME LINE L1 -384 5786 5579 691 308 53 24 chr6 57976010 57976942 -131302612 - L1ME LINE L1 -636 5528 4569 55 29 0 0 chr6 57977036 57977105 -131302449 + AT_rich Low_complexity Low_complexity 1 69 0 189 281 158 0 chr6 57978476 57978533 -131301021 - MIR SINE MIR -98 110 45 23 33 0 0 chr6 57978860 57978890 -131300664 + AT_rich Low_complexity Low_complexity 1 30 0 1068 253 45 73 chr6 57979122 57979300 -131300254 + L2 LINE L2 2359 2541 -773 2156 130 0 0 chr6 57979300 57979608 -131299946 - AluSg SINE Alu -2 308 1 1068 253 45 73 chr6 57979608 57979862 -131299692 + L2 LINE L2 2541 2777 -537 427 271 174 26 chr6 57979862 57980017 -131299537 + MER5A DNA MER1_type 4 181 -8 915 265 78 60 chr6 57980025 57980096 -131299458 + L2 LINE L2 2842 2910 -403 806 203 39 6 chr6 57980096 57980278 -131299276 + MER5A DNA MER1_type 2 189 0 915 265 78 60 chr6 57980278 57980670 -131298884 + L2 LINE L2 2910 3313 0 211 271 161 42 chr6 57981637 57981755 -131297799 + MIR3 SINE MIR 3 134 -74 1040 129 11 0 chr6 57981782 57981960 -131297594 + CT-rich Low_complexity Low_complexity 1 180 0 2298 120 0 0 chr6 57981969 57982277 -131297277 - AluSx SINE Alu -4 308 1 331 273 227 27 chr6 57984322 57984472 -131295082 - MER5A DNA MER1_type -1 188 9 262 177 32 0 chr6 57984631 57984693 -131294861 - L1MC4a LINE L1 -1400 6408 6345 4508 240 84 53 chr6 57984703 57987899 -131291655 - L1ME2 LINE L1 -19 6079 2789 963 271 50 11 chr6 57987927 57988304 -131291250 - L1ME2 LINE L1 -4410 1851 1460 21 36 0 0 chr6 57988316 57988344 -131291210 + AT_rich Low_complexity Low_complexity 1 28 0 348 289 0 0 chr6 57988644 57988748 -131290806 - L1ME3 LINE L1 -17 6145 6042 2213 239 61 22 chr6 57988754 57989612 -131289942 - L1ME2 LINE L1 -76 6088 5200 505 242 81 49 chr6 57989603 57990374 -131289180 - L1ME2 LINE L1 -4712 1368 526 * 712 305 26 55 chr6 57990621 57991041 -131288513 - L1ME2 LINE L1 -5617 453 46 212 322 51 34 chr6 57991289 57991407 -131288147 - L2 LINE L2 -31 3241 3122 655 178 23 8 chr6 57991416 57991545 -131288009 + FLAM_C SINE Alu 13 143 0 774 120 6 36 chr6 57991547 57991714 -131287840 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 * 795 136 7 13 chr6 57991706 57991860 -131287694 + (GAAA)n Simple_repeat Simple_repeat 4 156 0 11927 192 4 11 chr6 57993606 57997184 -131282370 - L1PB1 LINE L1 -157 6710 3156 231 200 0 0 chr6 57997187 57997237 -131282317 - L1PB1 LINE L1 -3857 3005 2956 734 189 0 42 chr6 57997251 57997442 -131282112 + L1 LINE L1 2849 3031 -3115 12253 107 115 7 chr6 57997469 57999568 -131279986 - L1PB1 LINE L1 -3913 2950 625 929 174 42 0 chr6 57999552 57999742 -131279812 - L1PB1 LINE L1 -6663 200 3 * 2169 100 0 4 chr6 57999931 58000237 -131279317 - AluSx SINE Alu 0 315 11 250 109 0 22 chr6 58000237 58000283 -131279271 - AluSp SINE Alu -139 164 120 230 284 102 34 chr6 58000288 58000376 -131279178 - L2 LINE L2 -23 3290 3197 256 248 0 28 chr6 58000538 58000647 -131278907 + GA-rich Low_complexity Low_complexity 4 109 0 723 151 20 48 chr6 58000729 58000875 -131278679 + L1PBa LINE L1 710 851 -6012 409 363 28 53 chr6 58000983 58001413 -131278141 - L2 LINE L2 -612 2702 2284 444 224 0 0 chr6 58002158 58002274 -131277280 + L1MB8 LINE L1 6063 6178 0 1422 209 32 11 chr6 58002853 58003136 -131276418 + AluJb SINE Alu 1 289 -23 1949 118 20 20 chr6 58004403 58004700 -131274854 - AluSq SINE Alu -16 297 1 896 195 52 0 chr6 58006125 58006279 -131273275 + MER58A DNA MER1_type 1 162 0 2146 127 0 3 chr6 58006555 58006854 -131272700 - AluSx SINE Alu -14 298 1 2138 132 0 3 chr6 58007339 58007649 -131271905 + AluSx SINE Alu 1 309 -3 209 200 33 33 chr6 58008377 58008497 -131271057 + (TTATA)n Simple_repeat Simple_repeat 4 123 0 * 301 194 28 10 chr6 58008483 58008776 -131270778 + (TA)n Simple_repeat Simple_repeat 1 298 0 452 194 32 0 chr6 58008831 58009172 -131270382 + (TA)n Simple_repeat Simple_repeat 1 352 0 455 188 0 0 chr6 58009634 58009719 -131269835 + MER58 DNA MER1_type 179 263 -78 1207 159 36 136 chr6 58010791 58011161 -131268393 - MER33 DNA MER1_type -8 355 1 193 292 82 99 chr6 58011181 58011352 -131268202 + MIR SINE MIR 41 208 -54 263 200 0 14 chr6 58013629 58013699 -131265855 + CT-rich Low_complexity Low_complexity 1 69 0 2280 80 0 20 chr6 58013987 58014288 -131265266 + AluSc SINE Alu 15 309 0 298 240 40 0 chr6 58016667 58016742 -131262812 + MER116 DNA Mariner 3 80 0 566 212 225 0 chr6 58016900 58017051 -131262503 + MIR SINE MIR 73 257 -5 414 261 92 0 chr6 58017733 58017852 -131261702 - L2 LINE L2 -4 3309 3180 947 116 0 0 chr6 58017988 58018117 -131261437 - AluSg/x SINE Alu -14 298 170 880 114 0 0 chr6 58018117 58018231 -131261323 - AluJb SINE Alu -197 115 2 468 48 0 0 chr6 58018431 58018494 -131261060 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 561 369 8 8 chr6 58020017 58020253 -131259301 - MIR SINE MIR 0 262 27 4170 232 36 15 chr6 58020447 58021520 -131258034 - L1MC4a LINE L1 -1 7807 6712 1938 116 36 36 chr6 58021899 58022202 -131257352 - AluSq SINE Alu -10 303 1 192 287 58 58 chr6 58022398 58022485 -131257069 - MIR SINE MIR -17 245 159 589 314 48 36 chr6 58022660 58022908 -131256646 + MIR SINE MIR 12 262 0 519 199 117 23 chr6 58023357 58023528 -131256026 + L2 LINE L2 3126 3312 -1 22 0 0 0 chr6 58023757 58023779 -131255775 + AT_rich Low_complexity Low_complexity 1 22 0 639 227 23 0 chr6 58024291 58024419 -131255135 - MER5A DNA MER1_type 0 189 59 289 300 36 36 chr6 58024542 58024682 -131254872 + MIR SINE MIR 12 151 -111 4965 164 70 50 chr6 58025893 58026942 -131252612 + MER11C LTR ERVK 1 1071 0 967 230 33 9 chr6 58027105 58027318 -131252236 - MER20 DNA MER1_type -1 218 1 295 268 71 36 chr6 58027803 58027915 -131251639 - MIR3 SINE MIR -26 182 67 186 43 0 0 chr6 58028345 58028368 -131251186 + (TG)n Simple_repeat Simple_repeat 2 24 0 1236 272 77 36 chr6 58028701 58028810 -131250744 + MLT1J LTR MaLR 26 129 -382 2048 122 62 46 chr6 58028810 58029179 -131250375 + THE1C LTR MaLR 1 375 0 1236 272 77 36 chr6 58029179 58029536 -131250018 + MLT1J LTR MaLR 129 511 0 493 307 52 33 chr6 58029695 58029907 -131249647 + MLT1K LTR MaLR 372 587 -1 544 300 110 13 chr6 58030470 58030707 -131248847 - MIR SINE MIR 0 262 3 738 308 25 8 chr6 58031381 58031621 -131247933 + MIR SINE MIR 14 257 -5 2925 120 40 7 chr6 58032391 58032841 -131246713 - MER4C LTR ERV1 0 465 1 233 250 0 0 chr6 58035633 58035681 -131243873 + (TATG)n Simple_repeat Simple_repeat 4 51 0 22 0 0 0 chr6 58036612 58036634 -131242920 + AT_rich Low_complexity Low_complexity 1 22 0 276 170 0 0 chr6 58037553 58037606 -131241948 + CT-rich Low_complexity Low_complexity 2 54 0 461 244 71 0 chr6 58039310 58039437 -131240117 - MIR SINE MIR -20 242 107 396 296 37 9 chr6 58041702 58041810 -131237744 - L2 LINE L2 0 3272 3162 288 0 0 0 chr6 58043827 58043859 -131235695 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 811 83 0 0 chr6 58043870 58043966 -131235588 - AluSq/x SINE Alu -184 129 34 485 127 0 0 chr6 58043966 58044029 -131235525 + AluSp/q SINE Alu 158 220 -93 474 274 109 46 chr6 58044068 58044353 -131235201 + LTR33 LTR ERVL 207 509 -12 630 192 0 8 chr6 58045299 58045419 -131234135 - MER94 DNA DNA -15 119 1 207 270 14 149 chr6 58045625 58045773 -131233781 + L2 LINE L2 3186 3313 0 183 384 0 27 chr6 58045912 58045985 -131233569 + L2 LINE L2 3000 3070 -202 234 0 0 0 chr6 58046713 58046739 -131232815 + (T)n Simple_repeat Simple_repeat 1 26 0 709 221 108 6 chr6 58047356 58047514 -131232040 + MER5B DNA MER1_type 5 178 0 2273 91 7 0 chr6 58048536 58048833 -131230721 - AluY SINE Alu -12 299 1 187 274 129 65 chr6 58048857 58048981 -131230573 + L2 LINE L2 3141 3272 0 417 397 22 22 chr6 58049497 58049681 -131229873 + L2 LINE L2 3080 3263 -9 186 318 16 0 chr6 58049912 58049975 -131229579 + L2 LINE L2 3250 3313 0 1236 301 77 27 chr6 58050003 58050667 -131228887 - L1MEd LINE L1 -5404 715 19 284 355 32 0 chr6 58051381 58051474 -131228080 - MIR3 SINE MIR -102 106 11 1115 193 41 16 chr6 58052167 58052410 -131227144 + MIR SINE MIR 14 262 0 290 278 193 40 chr6 58052616 58052839 -131226715 + MIR SINE MIR 6 262 0 321 295 90 26 chr6 58053528 58053684 -131225870 + L2 LINE L2 3148 3313 0 275 188 58 29 chr6 58053719 58053788 -131225766 + HSMAR1 DNA Mariner 1217 1287 0 25 65 0 0 chr6 58053942 58053988 -131225566 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr6 58054155 58054176 -131225378 + AT_rich Low_complexity Low_complexity 1 21 0 * 250 156 0 0 chr6 58054170 58054215 -131225339 - Alu SINE Alu 0 302 258 1602 178 34 24 chr6 58054176 58054469 -131225085 - AluJb SINE Alu -16 296 1 224 159 58 0 chr6 58054964 58055033 -131224521 + (TA)n Simple_repeat Simple_repeat 2 74 0 764 292 14 9 chr6 58056160 58056376 -131223178 + MIR SINE MIR 11 227 -35 329 334 156 25 chr6 58057046 58058072 -131221482 + L2 LINE L2 1513 2672 -642 1252 159 39 5 chr6 58058826 58059033 -131220521 + MER20 DNA MER1_type 6 219 0 180 278 41 82 chr6 58059409 58059506 -131220048 + MIR SINE MIR 127 219 -43 2087 109 27 14 chr6 58059512 58059830 -131219724 + AluSq SINE Alu 1 313 0 2067 133 0 3 chr6 58060610 58060911 -131218643 - AluSx SINE Alu -9 303 4 24 0 0 0 chr6 58060916 58060940 -131218614 + AT_rich Low_complexity Low_complexity 1 24 0 1303 46 17 0 chr6 58061235 58061409 -131218145 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 241 259 69 0 chr6 58061421 58061479 -131218075 + MIR SINE MIR 88 149 -113 485 192 133 8 chr6 58063029 58063149 -131216405 + L1MA10 LINE L1 6197 6331 -3 236 167 35 44 chr6 58063178 58063292 -131216262 + (TAA)n Simple_repeat Simple_repeat 1 113 0 1915 140 62 54 chr6 58063298 58063670 -131215884 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr6 58064505 58064526 -131215028 + AT_rich Low_complexity Low_complexity 1 21 0 402 338 7 14 chr6 58064569 58064708 -131214846 + MIR SINE MIR 18 155 -107 1505 184 0 32 chr6 58064818 58065095 -131214459 + AluJb SINE Alu 1 268 -44 341 252 84 8 chr6 58066285 58066404 -131213150 - LTR16B LTR ERVL 0 464 337 191 290 16 16 chr6 58067026 58067088 -131212466 + MIR SINE MIR 180 241 -21 2013 147 0 0 chr6 58067752 58068051 -131211503 - AluSx SINE Alu -13 299 1 1450 233 24 119 chr6 58068581 58068930 -131210624 + MLT1F LTR MaLR 4 290 -252 1940 122 36 10 chr6 58068930 58069233 -131210321 + AluJb SINE Alu 1 311 -1 1450 233 24 119 chr6 58069233 58069394 -131210160 + MLT1F LTR MaLR 290 465 -77 357 203 38 0 chr6 58069915 58069994 -131209560 + MLT1F LTR MaLR 483 564 -3 225 192 96 41 chr6 58071375 58071448 -131208106 - MER103 DNA DNA -1 165 89 226 347 8 25 chr6 58072711 58072832 -131206722 - L2 LINE L2 -629 2685 2567 367 114 11 69 chr6 58073164 58073339 -131206215 + (TA)n Simple_repeat Simple_repeat 2 166 0 216 174 54 22 chr6 58073406 58073498 -131206056 + (TATAG)n Simple_repeat Simple_repeat 2 96 0 226 175 0 18 chr6 58073544 58073601 -131205953 + L1MC4 LINE L1 6648 6703 -1339 266 106 45 15 chr6 58073744 58073810 -131205744 + (TA)n Simple_repeat Simple_repeat 1 68 0 188 307 40 13 chr6 58073811 58073886 -131205668 + L2 LINE L2 3118 3194 -78 1750 183 3 0 chr6 58074107 58074402 -131205152 - AluJb SINE Alu -16 296 1 2365 88 7 0 chr6 58074445 58074752 -131204802 + AluSx SINE Alu 1 309 -3 513 32 0 0 chr6 58076157 58076220 -131203334 + (CA)n Simple_repeat Simple_repeat 2 64 0 2231 107 0 0 chr6 58076479 58076777 -131202777 + AluSg SINE Alu 1 298 -12 635 323 136 27 chr6 58076897 58077265 -131202289 - L2 LINE L2 -18 3295 2888 387 246 181 25 chr6 58078615 58078814 -131200740 + MIR SINE MIR 5 234 -28 2143 119 3 0 chr6 58078906 58079199 -131200355 + AluY SINE Alu 1 294 -17 191 336 125 13 chr6 58079981 58080213 -131199341 + L2 LINE L2 2475 2732 -582 204 115 19 39 chr6 58080694 58080746 -131198808 + (TA)n Simple_repeat Simple_repeat 1 51 0 1860 168 40 3 chr6 58080749 58081076 -131198478 - MER2 DNA MER2_type 0 345 7 468 192 0 0 chr6 58081089 58081188 -131198366 + (CA)n Simple_repeat Simple_repeat 2 100 0 1928 76 111 0 chr6 58081585 58081847 -131197707 - AluSg SINE Alu -13 297 7 202 275 0 0 chr6 58082553 58082593 -131196961 + polypurine Low_complexity Low_complexity 1 40 0 189 94 0 0 chr6 58083666 58083698 -131195856 + (T)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr6 58084389 58084410 -131195144 + AT_rich Low_complexity Low_complexity 1 21 0 855 202 132 31 chr6 58084621 58084849 -131194705 + MIR SINE MIR 12 262 0 830 270 53 4 chr6 58084850 58085076 -131194478 + MIR SINE MIR 5 241 -21 626 199 64 0 chr6 58085560 58085701 -131193853 - MIR SINE MIR -99 163 14 276 220 68 0 chr6 58086537 58086596 -131192958 - MER5A DNA MER1_type -68 121 59 347 88 18 35 chr6 58087761 58087818 -131191736 - MADE1 DNA Mariner -24 56 1 441 271 103 14 chr6 58087830 58088044 -131191510 - MIR SINE MIR 0 262 30 183 254 32 48 chr6 58088148 58088211 -131191343 + MER5A DNA MER1_type 128 189 0 2614 189 10 8 chr6 58088248 58088729 -131190825 + L1MB2 LINE L1 5683 6164 -7 200 361 0 0 chr6 58089269 58089330 -131190224 + MER91A DNA MER1_type 2 62 -134 376 256 103 20 chr6 58089534 58089729 -131189825 + L1M4 LINE L1 2202 2412 -3734 591 298 11 5 chr6 58089826 58090014 -131189540 - MIR SINE MIR 0 262 74 905 168 0 0 chr6 58091383 58091514 -131188040 - FLAM_C SINE Alu -2 131 1 422 243 50 53 chr6 58091714 58091904 -131187650 + MIR SINE MIR 9 196 -62 182 133 0 44 chr6 58093273 58093318 -131186236 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 1116 208 6 105 chr6 58093702 58094049 -131185505 + AluJo SINE Alu 1 316 0 527 307 42 19 chr6 58094448 58094660 -131184894 - MIR SINE MIR -15 247 31 261 75 0 0 chr6 58094703 58094743 -131184811 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 499 222 26 34 chr6 58094784 58094901 -131184653 + MIR3 SINE MIR 54 169 -39 437 363 30 0 chr6 58095748 58095883 -131183671 - L2 LINE L2 0 3272 3134 907 222 23 71 chr6 58095952 58096218 -131183336 - MIR SINE MIR -1 261 9 597 261 24 86 chr6 58096243 58096560 -131182994 - L2 LINE L2 -191 3081 2781 633 318 62 46 chr6 58096562 58096687 -131182867 - L2 LINE L2 -1117 2197 2075 3158 127 4 9 chr6 58096687 58097137 -131182417 + MER83 LTR ERV1 1 448 0 633 318 62 46 chr6 58097137 58097225 -131182329 - L2 LINE L2 -1239 2075 1990 2104 133 0 3 chr6 58097225 58097533 -131182021 + AluSq SINE Alu 1 307 -6 633 318 62 46 chr6 58097533 58097755 -131181799 - L2 LINE L2 -1324 1990 1754 2287 122 0 0 chr6 58098853 58099165 -131180389 - AluSx SINE Alu 0 312 1 252 0 0 0 chr6 58099298 58099326 -131180228 + (TAA)n Simple_repeat Simple_repeat 1 28 0 269 312 83 18 chr6 58100564 58100673 -131178881 + L2 LINE L2 2571 2686 -628 194 188 16 125 chr6 58101024 58101088 -131178466 - L2 LINE L2 0 3272 3216 * 501 245 240 20 chr6 58101079 58101275 -131178279 - MIR SINE MIR -23 239 1 839 274 35 35 chr6 58101392 58101651 -131177903 + MIR SINE MIR 4 262 0 990 50 7 21 chr6 58101651 58101791 -131177763 - L1PA7 LINE L1 -126 6028 5891 943 70 0 16 chr6 58101791 58101919 -131177635 + L1PA6 LINE L1 6026 6151 -3 200 285 29 58 chr6 58102227 58102364 -131177190 - L2 LINE L2 -5 3308 3176 310 276 21 120 chr6 58102909 58103101 -131176453 - MER5B DNA MER1_type 0 178 6 2323 111 0 0 chr6 58104590 58104896 -131174658 + AluSx SINE Alu 1 306 -6 306 192 232 0 chr6 58106580 58106679 -131172875 - MIR3 SINE MIR 0 208 87 300 247 59 118 chr6 58106833 58106945 -131172609 + MIR SINE MIR 10 110 -152 2120 110 3 0 chr6 58106945 58107235 -131172319 - AluSx SINE Alu -21 291 1 300 247 59 118 chr6 58107235 58107292 -131172262 + MIR SINE MIR 110 169 -93 428 319 101 58 chr6 58108152 58108428 -131171126 + L2 LINE L2 2965 3252 -20 2732 251 120 17 chr6 58108451 58109482 -131170072 + L2 LINE L2 2071 3206 -107 2025 125 4 4 chr6 58109484 58109764 -131169790 + AluSq SINE Alu 1 280 -33 334 243 34 32 chr6 58111369 58111471 -131168083 - MIR SINE MIR -95 113 8 6951 28 0 0 chr6 58112747 58113561 -131165993 + L1PA4 LINE L1 5388 6201 0 2214 104 3 0 chr6 58113795 58114130 -131165424 - AluSq SINE Alu 0 336 1 705 278 233 36 chr6 58114671 58114780 -131164774 + L2 LINE L2 1327 1413 -1901 1984 148 0 3 chr6 58114780 58115078 -131164476 + AluJb SINE Alu 1 297 -15 705 278 233 36 chr6 58115078 58115698 -131163856 + L2 LINE L2 1413 2200 -1114 230 247 62 41 chr6 58115704 58115801 -131163753 + L1MDa LINE L1 1900 2283 -4258 1122 108 0 0 chr6 58115804 58115952 -131163602 + AluSg/x SINE Alu 158 305 -7 645 181 8 8 chr6 58115974 58116101 -131163453 - Charlie4 DNA MER1_type -18 1943 1817 210 245 19 0 chr6 58118211 58118264 -131161290 + (CA)n Simple_repeat Simple_repeat 2 55 0 3001 231 104 10 chr6 58118318 58119005 -131160549 - MER97a DNA MER1_type? -8 886 112 2487 81 0 0 chr6 58119005 58119312 -131160242 - AluY SINE Alu -4 307 1 3001 231 104 10 chr6 58119312 58119422 -131160132 - MER97a DNA MER1_type? -782 112 14 285 183 94 0 chr6 58120129 58120215 -131159339 - MIR SINE MIR -61 147 89 434 241 112 0 chr6 58120568 58120684 -131158870 - L2 LINE L2 0 3313 3185 460 277 113 28 chr6 58120687 58121005 -131158549 + LTR33 LTR ERVL 2 346 -175 268 224 35 0 chr6 58121083 58121141 -131158413 + LTR33 LTR ERVL 462 521 0 232 266 64 11 chr6 58121146 58121231 -131158323 - L2 LINE L2 -131 3182 3090 363 23 0 0 chr6 58121231 58121275 -131158279 + (TG)n Simple_repeat Simple_repeat 2 45 0 2942 169 45 17 chr6 58121513 58122041 -131157513 - MER44D DNA MER2_type 0 605 8 180 305 127 34 chr6 58122673 58122791 -131156763 - MER5A DNA MER1_type -58 131 3 2227 92 10 3 chr6 58122886 58123179 -131156375 - AluSc SINE Alu -14 295 1 379 173 0 49 chr6 58123965 58124046 -131155508 + Tigger2 DNA MER2_type 1 77 -2641 472 243 14 56 chr6 58124067 58124211 -131155343 - MER8 DNA MER2_type -63 176 39 207 339 102 25 chr6 58124914 58125004 -131154550 - MER5A DNA MER1_type -6 183 85 265 143 270 0 chr6 58125004 58125067 -131154487 + MER5A DNA MER1_type 2 81 -108 1428 214 25 0 chr6 58125071 58125347 -131154207 + AluJo SINE Alu 10 292 -20 240 204 0 20 chr6 58125347 58125396 -131154158 + GA-rich Low_complexity Low_complexity 1 48 0 910 0 18 0 chr6 58125397 58125507 -131154047 + (GAAAA)n Simple_repeat Simple_repeat 3 114 0 594 185 8 62 chr6 58125516 58125646 -131153908 + MER5A DNA MER1_type 67 189 0 668 126 45 0 chr6 58125905 58126016 -131153538 - L1MA9 LINE L1 -3 6309 6194 496 279 62 92 chr6 58126077 58126382 -131153172 + L2 LINE L2 2977 3272 0 579 289 54 18 chr6 58126397 58126624 -131152930 + MIR SINE MIR 1 245 -17 180 111 0 0 chr6 58126778 58126805 -131152749 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 220 220 0 40 chr6 58126860 58126910 -131152644 + (CGTG)n Simple_repeat Simple_repeat 3 50 0 253 288 30 0 chr6 58127387 58127453 -131152101 - L2 LINE L2 0 3313 3246 351 237 111 87 chr6 58127586 58127793 -131151761 - MIR SINE MIR -50 212 1 1854 191 17 41 chr6 58128099 58128444 -131151110 - MER1B DNA MER1_type 0 337 1 235 377 19 0 chr6 58128513 58128619 -131150935 - MER5A DNA MER1_type -69 120 13 226 182 25 83 chr6 58128634 58128755 -131150799 - Charlie7 DNA MER1_type -56 2556 2443 23 0 0 0 chr6 58129329 58129352 -131150202 + AT_rich Low_complexity Low_complexity 1 23 0 269 271 71 24 chr6 58129450 58129535 -131150019 - L2 LINE L2 -15 3257 3169 2409 130 28 3 chr6 58129722 58130077 -131149477 - THE1B LTR MaLR 0 364 1 413 320 125 36 chr6 58130125 58130684 -131148870 - L2 LINE L2 -1135 2179 1571 206 294 0 0 chr6 58131429 58131480 -131148074 + (CA)n Simple_repeat Simple_repeat 2 52 0 432 37 0 0 chr6 58132481 58132535 -131147019 + (TG)n Simple_repeat Simple_repeat 2 55 0 969 268 108 30 chr6 58134098 58134497 -131145057 - L3 LINE CR1 -16 1561 1132 2231 93 0 0 chr6 58134513 58134822 -131144732 - AluSc SINE Alu 0 309 1 200 239 0 22 chr6 58135059 58135105 -131144449 - L3 LINE CR1 -958 619 575 231 349 23 31 chr6 58136078 58136207 -131143347 - MIR3 SINE MIR -76 132 5 324 348 36 0 chr6 58136334 58136446 -131143108 + L2 LINE L2 3143 3258 -14 212 196 43 0 chr6 58136536 58136582 -131142972 + L2 LINE L2 3266 3313 0 189 107 0 0 chr6 58136698 58136726 -131142828 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 195 317 17 0 chr6 58136727 58136787 -131142767 - L2 LINE L2 -12 3260 3200 389 199 215 44 chr6 58137156 58137309 -131142245 - MER5A DNA MER1_type -1 188 4 1983 135 17 0 chr6 58137349 58137638 -131141916 + AluSx SINE Alu 1 294 -18 474 49 0 0 chr6 58137639 58137700 -131141854 + (TA)n Simple_repeat Simple_repeat 1 61 0 832 256 17 11 chr6 58139534 58139710 -131139844 - MER45A DNA AcHobo -1 177 1 246 301 92 72 chr6 58140083 58140429 -131139125 + L2 LINE L2 2878 3230 -42 574 147 0 32 chr6 58140479 58140574 -131138980 + FLAM_A SINE Alu 1 92 -50 248 193 60 12 chr6 58140579 58140662 -131138892 + (TTAAA)n Simple_repeat Simple_repeat 3 89 0 287 290 28 9 chr6 58140942 58141049 -131138505 + GA-rich Low_complexity Low_complexity 4 112 0 871 198 51 30 chr6 58141962 58142224 -131137330 + LTR37A LTR ERV1 200 426 0 22 56 0 0 chr6 58142798 58142834 -131136720 + AT_rich Low_complexity Low_complexity 1 36 0 195 184 0 0 chr6 58143521 58143559 -131135995 + GA-rich Low_complexity Low_complexity 4 41 0 615 172 29 23 chr6 58143574 58143748 -131135806 + GA-rich Low_complexity Low_complexity 4 178 0 719 144 0 36 chr6 58143768 58143935 -131135619 + (GGGA)n Simple_repeat Simple_repeat 3 163 0 282 286 41 34 chr6 58144009 58144156 -131135398 + L1ME LINE L1 5509 5656 -510 23 33 0 0 chr6 58144185 58144215 -131135339 + AT_rich Low_complexity Low_complexity 1 30 0 265 172 129 75 chr6 58147591 58147684 -131131870 - MIR SINE MIR 0 262 165 291 129 208 20 chr6 58148631 58148732 -131130822 + L3 LINE CR1 645 764 -813 378 339 51 6 chr6 58149580 58149757 -131129797 - MIR SINE MIR 0 262 78 237 213 0 0 chr6 58149804 58149851 -131129703 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 394 154 110 22 chr6 58151609 58151700 -131127854 - MER115 DNA AcHobo 0 693 595 1439 218 20 56 chr6 58151700 58151804 -131127750 - MLT2C1 LTR ERVL 0 397 291 1455 198 70 56 chr6 58151804 58152163 -131127391 + MLT1A1 LTR MaLR 1 364 -1 1439 218 20 56 chr6 58152163 58152466 -131127088 - MLT2C1 LTR ERVL -106 291 5 6796 220 87 28 chr6 58152471 58154601 -131124953 - Zaphod DNA AcHobo -95 3936 1682 2028 151 0 3 chr6 58154645 58154949 -131124605 + AluSx SINE Alu 1 303 -9 221 379 21 58 chr6 58155569 58155809 -131123745 + L2 LINE L2 2980 3210 -62 320 398 0 0 chr6 58156747 58156860 -131122694 - MIR3 SINE MIR -46 162 50 21 57 0 0 chr6 58157826 58157861 -131121693 + AT_rich Low_complexity Low_complexity 1 35 0 510 331 6 0 chr6 58158704 58158861 -131120693 - MER115 DNA AcHobo -267 426 269 644 312 63 4 chr6 58158978 58159231 -131120323 + MER115 DNA AcHobo 426 693 0 502 266 98 40 chr6 58160519 58160692 -131118862 - MIR SINE MIR -27 235 53 1209 115 0 60 chr6 58160823 58161057 -131118497 + L1MA4A LINE L1 5663 5882 -421 1740 169 45 10 chr6 58161104 58161394 -131118160 + AluJb SINE Alu 1 300 -12 821 202 60 0 chr6 58161687 58161855 -131117699 - MER45A DNA AcHobo 0 178 1 2277 86 0 23 chr6 58162315 58162619 -131116935 + AluY SINE Alu 1 297 -14 426 53 0 0 chr6 58163098 58163155 -131116399 + (CA)n Simple_repeat Simple_repeat 2 58 0 1412 243 80 70 chr6 58163431 58163970 -131115584 - MER77 LTR ERV1 -8 597 54 288 219 48 9 chr6 58163997 58164102 -131115452 + L1ME LINE L1 5748 5856 -265 240 35 0 0 chr6 58166215 58166244 -131113310 + (CA)n Simple_repeat Simple_repeat 2 30 0 186 381 72 22 chr6 58166312 58166451 -131113103 + L2 LINE L2 3121 3266 -6 873 103 0 41 chr6 58166513 58166658 -131112896 + L1PA14 LINE L1 6022 6160 -1 448 230 0 40 chr6 58167249 58167349 -131112205 + L2 LINE L2 3218 3313 0 237 119 0 0 chr6 58168434 58168476 -131111078 + (TTG)n Simple_repeat Simple_repeat 2 43 0 2033 90 34 0 chr6 58168476 58168742 -131110812 - AluSx SINE Alu -33 279 5 2306 53 0 7 chr6 58168908 58169230 -131110324 + AluY SINE Alu 1 320 0 228 317 24 8 chr6 58170093 58170216 -131109338 - MARNA DNA Mariner -163 423 299 1744 156 3 57 chr6 58170325 58170639 -131108915 + AluJb SINE Alu 1 297 -15 25 0 0 0 chr6 58170655 58170680 -131108874 + AT_rich Low_complexity Low_complexity 1 25 0 563 302 95 17 chr6 58170993 58171225 -131108329 - MIR SINE MIR 0 262 13 264 122 0 0 chr6 58171240 58171281 -131108273 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2478 159 27 3 chr6 58171846 58172593 -131106961 - L1MA4 LINE L1 0 6300 5345 358 319 164 10 chr6 58172731 58172938 -131106616 - MIR SINE MIR -15 247 9 296 299 281 0 chr6 58173010 58173177 -131106377 - MIR SINE MIR 0 262 49 788 223 33 11 chr6 58173405 58173589 -131105965 - MER5A DNA MER1_type 0 189 2 279 253 21 53 chr6 58174215 58174310 -131105244 - MIR3 SINE MIR -7 201 110 10978 53 10 2 chr6 58175587 58177757 -131101797 + L1PA6 LINE L1 3968 6153 -1 1292 254 61 24 chr6 58178019 58178445 -131101109 + L2 LINE L2 1895 2336 -978 2586 247 91 68 chr6 58178657 58178795 -131100759 - HAL1 LINE L1 -110 2397 2264 1618 106 13 0 chr6 58178795 58179022 -131100532 + MER30 DNA MER1_type 1 230 0 2586 247 91 68 chr6 58179022 58180590 -131098964 - HAL1 LINE L1 -243 2264 651 2060 156 5 30 chr6 58180595 58180968 -131098586 + THE1B LTR MaLR 1 364 0 1182 249 65 30 chr6 58181009 58181442 -131098112 - HAL1 LINE L1 -1945 562 115 1883 281 21 5 chr6 58181455 58182014 -131097540 + MLT1E LTR MaLR 21 588 -5 325 311 48 0 chr6 58183781 58183884 -131095670 + MIR SINE MIR 28 135 -73 303 324 90 14 chr6 58184929 58185074 -131094480 - MIR3 SINE MIR -10 198 43 25 0 0 0 chr6 58186432 58186457 -131093097 + AT_rich Low_complexity Low_complexity 1 25 0 229 217 43 0 chr6 58186564 58186610 -131092944 - L2 LINE L2 -22 3291 3244 4251 155 71 17 chr6 58187416 58188270 -131091284 + MER4D LTR ERV1 1 663 -1 393 320 31 34 chr6 58189114 58189288 -131090266 - MIR3 SINE MIR -9 199 22 290 276 66 13 chr6 58190003 58190079 -131089475 - L2 LINE L2 0 3272 3193 26 30 0 0 chr6 58190665 58190698 -131088856 + AT_rich Low_complexity Low_complexity 1 33 0 2118 90 0 3 chr6 58190904 58191194 -131088360 - L1PB1 LINE L1 -2 6149 5861 202 263 237 35 chr6 58191764 58191878 -131087676 + L2 LINE L2 3126 3262 -10 814 278 70 9 chr6 58192343 58192570 -131086984 - MIR SINE MIR -10 252 12 1130 186 10 0 chr6 58192725 58192924 -131086630 - MER58A DNA MER1_type 0 224 24 182 268 14 70 chr6 58194163 58194234 -131085320 + L2 LINE L2 1152 1218 -2096 354 318 42 21 chr6 58195457 58195646 -131083908 - L1M4 LINE L1 -3811 2335 2143 284 222 0 69 chr6 58195783 58195855 -131083699 - L2 LINE L2 -4 3309 3243 368 254 41 25 chr6 58196697 58196819 -131082735 - MIR SINE MIR 0 262 139 340 289 11 0 chr6 58196819 58196909 -131082645 - MIR SINE MIR -72 190 100 193 326 81 0 chr6 58196926 58197012 -131082542 - MIR SINE MIR -109 153 61 2213 108 0 13 chr6 58197139 58197444 -131082110 - AluSg SINE Alu -9 301 1 304 239 57 11 chr6 58197690 58197778 -131081776 - MIR3 SINE MIR -16 192 101 2146 121 85 73 chr6 58198035 58198458 -131081096 + MSTA LTR MaLR 1 428 0 376 288 118 7 chr6 58198458 58198611 -131080943 + MIR3 SINE MIR 26 195 -13 225 287 129 30 chr6 58199777 58199788 -131079766 + L2 LINE L2 3200 3209 -104 1953 146 0 20 chr6 58199788 58199947 -131079607 - AluSq SINE Alu -18 295 134 261 0 0 0 chr6 58199947 58199976 -131079578 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1952 130 0 31 chr6 58199976 58200269 -131079285 - AluSx SINE Alu -28 284 1 1953 146 0 20 chr6 58200269 58200409 -131079145 - AluSq SINE Alu -177 136 1 225 287 129 30 chr6 58200409 58200498 -131079056 + L2 LINE L2 3209 3310 -3 220 196 0 0 chr6 58200583 58200629 -131078925 + (TG)n Simple_repeat Simple_repeat 2 47 0 839 316 125 40 chr6 58201249 58201933 -131077621 - L2 LINE L2 -108 3205 2451 1188 230 40 40 chr6 58201933 58202328 -131077226 + L1ME2 LINE L1 5761 6155 -9 944 240 21 42 chr6 58202345 58202633 -131076921 - L2 LINE L2 -850 2464 2183 358 227 72 21 chr6 58202633 58202730 -131076824 - MIR SINE MIR -61 201 100 772 162 8 0 chr6 58203003 58203120 -131076434 + AluSq/x SINE Alu 3 120 -193 24 53 0 0 chr6 58203120 58203158 -131076396 + AT_rich Low_complexity Low_complexity 1 38 0 1317 223 68 0 chr6 58203183 58203475 -131076079 + AluJo SINE Alu 1 312 0 2369 90 0 3 chr6 58203773 58204085 -131075469 + AluY SINE Alu 1 311 0 2095 108 10 36 chr6 58204582 58204888 -131074666 + AluSq SINE Alu 1 298 -15 180 200 0 0 chr6 58205339 58205379 -131074175 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 2067 134 3 3 chr6 58205733 58206031 -131073523 - AluSx SINE Alu -14 298 1 28 0 0 0 chr6 58206032 58206060 -131073494 + AT_rich Low_complexity Low_complexity 1 28 0 294 296 35 52 chr6 58206867 58206982 -131072572 + L2 LINE L2 2987 3099 -173 1826 164 0 31 chr6 58207163 58207481 -131072073 - AluJo SINE Alu 0 312 5 1896 147 4 0 chr6 58208711 58208984 -131070570 - AluSx SINE Alu -38 274 1 294 71 0 0 chr6 58209038 58209080 -131070474 - MADE1 DNA Mariner -3 77 36 444 203 221 32 chr6 58209594 58209752 -131069802 - MER5A DNA MER1_type -1 188 1 929 276 70 26 chr6 58209795 58210179 -131069375 + MLT1I LTR MaLR 9 409 0 610 234 206 10 chr6 58211300 58211509 -131068045 + MIR SINE MIR 13 262 0 361 332 112 10 chr6 58211848 58212044 -131067510 - MIR SINE MIR -19 243 28 2065 291 84 11 chr6 58212291 58213041 -131066513 - L2 LINE L2 -373 2941 2137 500 331 22 28 chr6 58213080 58213258 -131066296 - MIR3 SINE MIR -4 204 28 991 187 15 10 chr6 58214087 58214290 -131065264 - MER3 DNA MER1_type -5 204 1 387 0 0 0 chr6 58214947 58214990 -131064564 + (TG)n Simple_repeat Simple_repeat 2 44 0 2219 128 0 0 chr6 58215129 58215433 -131064121 - AluSx SINE Alu -8 304 1 906 61 14 7 chr6 58215610 58215758 -131063796 + (TC)n Simple_repeat Simple_repeat 1 149 0 281 301 75 32 chr6 58216004 58216097 -131063457 + MER5A DNA MER1_type 45 141 -48 1463 161 88 15 chr6 58216114 58216375 -131063179 - AluJb SINE Alu -30 282 3 32 0 0 0 chr6 58216541 58216573 -131062981 + AT_rich Low_complexity Low_complexity 1 32 0 522 182 59 35 chr6 58216695 58216865 -131062689 + MER53 DNA DNA 3 176 -13 498 319 56 24 chr6 58216903 58217116 -131062438 + MIR SINE MIR 9 228 -34 187 311 89 11 chr6 58218490 58218580 -131060974 + MIR3 SINE MIR 82 178 -30 240 258 0 0 chr6 58218919 58218981 -131060573 - L2 LINE L2 -3 3269 3208 1420 115 7 82 chr6 58220189 58220319 -131059235 + L1PA16 LINE L1 5909 6011 -155 1915 131 3 0 chr6 58220319 58220638 -131058916 + AluSx SINE Alu 1 320 0 1420 115 7 82 chr6 58220638 58220775 -131058779 + L1PA16 LINE L1 6011 6157 -9 307 330 78 20 chr6 58221382 58221728 -131057826 - L1MC/D LINE L1 -2171 5637 5272 1583 201 10 26 chr6 58221874 58222183 -131057371 - AluJo SINE Alu -8 304 1 2198 112 0 0 chr6 58222226 58222531 -131057023 - AluSx SINE Alu -7 305 1 1673 106 19 0 chr6 58222822 58223078 -131056476 - L1MA5A LINE L1 0 6297 6037 2008 145 0 3 chr6 58224052 58224378 -131055176 + AluSq SINE Alu 3 313 0 2301 65 0 28 chr6 58224553 58224868 -131054686 + AluY SINE Alu 1 307 0 199 333 27 0 chr6 58225452 58225527 -131054027 - MIR SINE MIR -110 152 76 1733 173 14 3 chr6 58230132 58230427 -131049127 - AluJb SINE Alu -14 298 1 2676 109 57 15 chr6 58230453 58230928 -131048626 - L1MA3 LINE L1 0 6305 5811 349 286 349 0 chr6 58230966 58231155 -131048399 - MIR SINE MIR -6 256 2 276 261 46 0 chr6 58232328 58232393 -131047161 - L2 LINE L2 0 3272 3205 969 225 19 0 chr6 58232557 58232770 -131046784 + Charlie8 DNA MER1_type 1 217 -2200 693 291 130 16 chr6 58233292 58233739 -131045815 + L1MC/D LINE L1 5260 5757 -2051 252 239 56 0 chr6 58233776 58233847 -131045707 + MLT1I LTR MaLR 321 395 -14 2071 140 0 0 chr6 58234000 58234300 -131045254 + AluSx SINE Alu 6 305 -7 3812 31 0 0 chr6 58234857 58235333 -131044221 - L1PA2 LINE L1 -960 5186 4711 7880 14 0 0 chr6 58235333 58236328 -131043226 + L1PA2 LINE L1 5161 6155 0 321 293 55 50 chr6 58236359 58236759 -131042795 - L1MC/D LINE L1 -1196 4950 4549 1047 188 118 12 chr6 58236832 58237087 -131042467 + Ricksha DNA DNA 8 289 -2957 * 7147 145 49 30 chr6 58237085 58237169 -131042385 + Ricksha DNA DNA 1821 1902 -1344 2290 80 7 0 chr6 58237169 58237456 -131042098 + AluSx SINE Alu 1 289 -23 7147 145 49 30 chr6 58237456 58238542 -131041012 + Ricksha DNA DNA 1902 3024 -222 7206 48 13 0 chr6 58238542 58239584 -131039970 - L1PA7 LINE L1 -7 6147 5102 7147 145 49 30 chr6 58239584 58239812 -131039742 + Ricksha DNA DNA 3024 3246 0 22 0 0 0 chr6 58239847 58239869 -131039685 + AT_rich Low_complexity Low_complexity 1 22 0 330 240 40 10 chr6 58240686 58240786 -131038768 + L1ME LINE L1 5486 5588 -574 745 197 41 55 chr6 58240832 58240934 -131038620 + L1ME LINE L1 5588 5690 -476 1859 177 17 0 chr6 58240934 58241233 -131038321 + AluJb SINE Alu 1 304 -8 745 197 41 55 chr6 58241233 58241348 -131038206 + L1ME LINE L1 5690 5802 -364 255 100 0 0 chr6 58242463 58242503 -131037051 - MLT2B1 LTR ERVL 0 520 481 219 245 0 0 chr6 58242507 58242560 -131036994 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 782 222 87 26 chr6 58242560 58242959 -131036595 - MLT2B1 LTR ERVL -39 481 5 552 270 99 10 chr6 58243926 58244119 -131035435 - MIR SINE MIR -10 252 45 654 257 124 9 chr6 58245090 58245300 -131034254 + MIR SINE MIR 8 241 -21 374 269 173 39 chr6 58246568 58246724 -131032830 + MER91A DNA MER1_type 1 177 -19 327 312 0 18 chr6 58246855 58246964 -131032590 + CT-rich Low_complexity Low_complexity 5 111 0 812 206 34 82 chr6 58247296 58247563 -131031991 + MLT1E2 LTR MaLR 1 254 -372 * 827 206 10 119 chr6 58247537 58247917 -131031637 + MLT1E2 LTR MaLR 200 440 -65 3757 200 11 10 chr6 58247951 58248074 -131031480 - MER44D DNA MER2_type -1884 603 482 2287 133 88 10 chr6 58248074 58248471 -131031083 - MSTA LTR MaLR 0 428 1 3757 200 11 10 chr6 58248471 58249073 -131030481 - MER44D DNA MER2_type -2005 482 5 684 184 25 0 chr6 58249084 58249242 -131030312 + L1MD1 LINE L1 1573 1734 -4806 * 1157 243 63 53 chr6 58249227 58249909 -131029645 + L1MD1 LINE L1 3132 3820 -2720 6481 126 29 51 chr6 58249960 58250509 -131029045 + Tigger3b DNA MER2_type 2 562 -2466 632 183 30 23 chr6 58250509 58250640 -131028914 - FLAM_A SINE Alu -1 132 1 6481 126 29 51 chr6 58250640 58251070 -131028484 + Tigger3b DNA MER2_type 562 949 -2079 2074 171 12 3 chr6 58251070 58251404 -131028150 + MER1B DNA MER1_type 1 337 0 6481 126 29 51 chr6 58251404 58251681 -131027873 + Tigger3b DNA MER2_type 949 1231 0 2705 220 34 40 chr6 58251730 58252576 -131026978 + L1MD1 LINE L1 3899 4739 -1801 2528 160 40 64 chr6 58252572 58252794 -131026760 + L1MD1 LINE L1 6019 6245 -391 * 2010 130 24 0 chr6 58252794 58253086 -131026468 - AluSx SINE Alu -11 301 3 2528 160 40 64 chr6 58253086 58253488 -131026066 + L1MD1 LINE L1 6245 6628 -8 497 224 83 14 chr6 58253599 58253753 -131025801 - MLT1G1 LTR MaLR -388 161 1 261 333 40 56 chr6 58255123 58255249 -131024305 + L3 LINE CR1 1096 1219 -358 1396 127 84 32 chr6 58255516 58255824 -131023730 + MER33 DNA MER1_type 1 324 0 2275 125 0 7 chr6 58256424 58256729 -131022825 - AluSx SINE Alu -9 303 1 365 175 237 9 chr6 58256793 58256907 -131022647 + MIR SINE MIR 117 256 -6 327 49 0 0 chr6 58257966 58258007 -131021547 + (CA)n Simple_repeat Simple_repeat 2 42 0 539 271 214 21 chr6 58258098 58258486 -131021068 - L2 LINE L2 -785 2529 2067 276 294 91 14 chr6 58258699 58258842 -131020712 - L2 LINE L2 -1262 2052 1899 297 235 15 0 chr6 58258845 58258913 -131020641 + L1MA9 LINE L1 6162 6230 -82 22 35 0 0 chr6 58258940 58258969 -131020585 + AT_rich Low_complexity Low_complexity 1 29 0 2334 97 0 0 chr6 58259248 58259546 -131020008 + AluSg SINE Alu 1 298 -12 288 376 30 8 chr6 58261787 58261920 -131017634 - L2 LINE L2 0 3272 3137 2737 156 23 19 chr6 58262087 58262562 -131016992 - L1MB1 LINE L1 -1 6167 5691 554 274 86 16 chr6 58262865 58263051 -131016503 + MIR SINE MIR 62 260 -2 2129 120 10 0 chr6 58263072 58263372 -131016182 + AluSx SINE Alu 1 303 -9 325 250 0 0 chr6 58263389 58263469 -131016085 - MIR SINE MIR 0 262 183 1044 233 123 40 chr6 58263571 58263970 -131015584 - LTR16A1 LTR ERVL 0 457 26 816 239 21 21 chr6 58263970 58264158 -131015396 - MLT1G1 LTR MaLR -16 579 392 1176 226 37 54 chr6 58264196 58264377 -131015177 - MLT1G1 LTR MaLR -295 300 117 2002 198 27 14 chr6 58264377 58264746 -131014808 + MLT1A2 LTR MaLR 1 374 0 2010 165 7 89 chr6 58264751 58265016 -131014538 - MLT1B LTR MaLR 0 390 172 1357 177 30 37 chr6 58265016 58265316 -131014238 + AluJo SINE Alu 3 300 -12 2010 165 7 89 chr6 58265316 58265475 -131014079 - MLT1B LTR MaLR -218 172 1 1176 226 37 54 chr6 58265475 58265583 -131013971 - MLT1G1 LTR MaLR -482 113 10 21 57 0 0 chr6 58265847 58265882 -131013672 + AT_rich Low_complexity Low_complexity 1 35 0 22 88 0 0 chr6 58266137 58266194 -131013360 + AT_rich Low_complexity Low_complexity 1 57 0 2182 104 7 7 chr6 58266247 58266545 -131013009 - AluSx SINE Alu -14 298 1 751 213 60 14 chr6 58266763 58266979 -131012575 - L1MB1 LINE L1 -2309 5499 5274 2350 112 3 0 chr6 58267031 58267343 -131012211 + AluSp SINE Alu 1 313 0 387 250 160 19 chr6 58267569 58267725 -131011829 - MIR SINE MIR -10 252 75 1835 173 64 9 chr6 58268566 58268912 -131010642 - MLT1A1 LTR MaLR 0 365 1 442 230 95 8 chr6 58269004 58269130 -131010424 - MIR3 SINE MIR -57 151 15 264 103 26 0 chr6 58269345 58269384 -131010170 - MER96B DNA MER1_type? -188 229 190 585 194 111 33 chr6 58269619 58269799 -131009755 - MER96B DNA MER1_type? -216 201 8 2244 110 3 0 chr6 58269929 58270228 -131009326 + AluSq SINE Alu 1 300 -13 472 272 127 13 chr6 58271216 58271444 -131008110 - L1MEc LINE L1 -4267 1994 1741 1940 137 11 7 chr6 58271451 58271736 -131007818 - AluSg SINE Alu -22 288 3 293 241 52 52 chr6 58271767 58271883 -131007671 - L1MEc LINE L1 -5404 666 551 3210 52 0 0 chr6 58271883 58272251 -131007303 + L1PA8 LINE L1 5804 6171 -1 259 61 20 61 chr6 58272253 58272302 -131007252 + L1PA15 LINE L1 6119 6165 0 9993 89 9 0 chr6 58272315 58274386 -131005168 + L1PA7 LINE L1 4077 6163 0 1338 271 22 55 chr6 58274405 58274862 -131004692 - L1MEc LINE L1 -5627 443 2 229 313 40 20 chr6 58274969 58275068 -131004486 - L2 LINE L2 -16 3256 3156 298 362 7 35 chr6 58275284 58275425 -131004129 - MIR SINE MIR -113 149 13 1813 141 7 17 chr6 58275756 58276047 -131003507 - AluSx SINE Alu -14 298 11 243 201 180 2 chr6 58276057 58276133 -131003421 - MIR SINE MIR -60 148 65 282 358 62 34 chr6 58276287 58276463 -131003091 - MIR SINE MIR -62 200 20 1958 142 0 43 chr6 58277245 58277569 -131001985 - AluSx SINE Alu 0 312 3 251 356 17 25 chr6 58277909 58278027 -131001527 + MIR SINE MIR 32 148 -60 580 254 88 31 chr6 58278145 58278338 -131001216 - L2 LINE L2 -61 3252 3049 22 0 0 0 chr6 58278517 58278539 -131001015 + AT_rich Low_complexity Low_complexity 1 22 0 1740 261 77 31 chr6 58279379 58279545 -131000009 + MLT1F LTR MaLR 1 158 -384 2066 148 3 0 chr6 58279545 58279848 -130999706 + AluSx SINE Alu 1 304 -8 1740 261 77 31 chr6 58279848 58280199 -130999355 + MLT1F LTR MaLR 158 542 0 896 122 8 0 chr6 58281107 58281238 -130998316 + AluSg/x SINE Alu 166 297 -13 337 254 146 55 chr6 58282436 58282656 -130996898 + MIR SINE MIR 23 262 0 198 294 29 0 chr6 58283196 58283264 -130996290 - L2 LINE L2 -94 3219 3150 535 238 19 0 chr6 58283626 58283731 -130995823 - MER81 DNA DNA -7 107 1 488 350 106 4 chr6 58284030 58284267 -130995287 + MIR SINE MIR 1 261 -1 2421 87 3 0 chr6 58284353 58284652 -130994902 + AluSp SINE Alu 1 300 -13 538 281 57 17 chr6 58284763 58285179 -130994375 + LTR33 LTR ERVL 1 521 0 432 307 42 6 chr6 58285232 58285398 -130994156 - MER5B DNA MER1_type -5 173 2 310 248 148 10 chr6 58285533 58285634 -130993920 + L2 LINE L2 3194 3308 -5 834 284 134 17 chr6 58286763 58287165 -130992389 + LTR33 LTR ERVL 20 468 -53 233 350 133 22 chr6 58287192 58287418 -130992136 + L3b LINE CR1 1324 1574 -9 339 239 68 11 chr6 58288620 58288708 -130990846 - MIR3 SINE MIR -4 204 112 292 353 32 0 chr6 58289309 58289465 -130990089 - L2 LINE L2 -932 2382 2222 818 252 62 28 chr6 58289497 58289728 -130989826 + MIR SINE MIR 2 241 -21 3081 156 11 0 chr6 58289872 58290334 -130989220 + MLT1C LTR MaLR 1 467 0 325 335 0 71 chr6 58290397 58290567 -130988987 + L2 LINE L2 2925 3082 -190 266 154 0 0 chr6 58290656 58290695 -130988859 - 5S rRNA rRNA -81 40 2 363 291 89 25 chr6 58290713 58290871 -130988683 - MER5B DNA MER1_type -10 168 1 252 265 98 29 chr6 58290885 58290987 -130988567 + L2 LINE L2 3204 3312 -1 2084 130 0 16 chr6 58291169 58291476 -130988078 - AluSx SINE Alu -10 302 1 232 236 0 0 chr6 58291845 58291900 -130987654 - L1ME4a LINE L1 0 6121 6067 547 168 4 15 chr6 58291948 58292182 -130987372 + AluJo SINE Alu 38 304 -8 664 166 6 166 chr6 58292669 58292844 -130986710 + MER58B DNA MER1_type 195 341 0 504 270 173 22 chr6 58293332 58293558 -130985996 + MIR SINE MIR 3 262 0 1552 173 10 23 chr6 58293697 58294004 -130985550 + AluSx SINE Alu 1 303 -9 660 249 79 62 chr6 58294040 58294281 -130985273 + MER112 DNA MER1_type 7 251 -9 1732 172 0 24 chr6 58294451 58294747 -130984807 + AluJb SINE Alu 1 289 -23 238 284 0 12 chr6 58295961 58296042 -130983512 + MIR SINE MIR 113 192 -70 2532 51 0 0 chr6 58296976 58297269 -130982285 + AluY SINE Alu 1 293 -18 1219 155 16 72 chr6 58298069 58298320 -130981234 - AluJb SINE Alu -26 286 50 1271 315 76 28 chr6 58298644 58299292 -130980262 - L3 LINE CR1 -313 1264 586 23 0 0 0 chr6 58299897 58299920 -130979634 + AT_rich Low_complexity Low_complexity 1 23 0 723 249 127 5 chr6 58300696 58300901 -130978653 + MIR SINE MIR 5 234 -28 400 286 90 97 chr6 58301007 58301297 -130978257 - L2 LINE L2 -43 3229 2942 2401 54 3 10 chr6 58301403 58301701 -130977853 + AluY SINE Alu 1 296 -15 296 315 113 48 chr6 58301707 58302018 -130977536 + MLT1J LTR MaLR 32 362 -149 210 301 22 37 chr6 58302165 58302301 -130977253 + GA-rich Low_complexity Low_complexity 3 136 0 661 234 111 44 chr6 58302510 58302736 -130976818 - MIR SINE MIR -19 243 3 210 171 0 0 chr6 58303476 58303517 -130976037 + GA-rich Low_complexity Low_complexity 3 43 0 253 174 0 0 chr6 58303517 58303563 -130975991 + Charlie1 DNA MER1_type 96 141 -2620 2222 62 0 38 chr6 58303580 58303871 -130975683 + AluSx SINE Alu 1 280 -32 2343 81 0 0 chr6 58303915 58304211 -130975343 + AluY SINE Alu 1 296 -15 2340 174 72 19 chr6 58304211 58304723 -130974831 + Charlie1 DNA MER1_type 2221 2759 -2 4910 178 51 4 chr6 58304737 58305581 -130973973 - L1MC1 LINE L1 -1 6332 5449 9147 106 6 29 chr6 58305581 58306672 -130972882 - HSMAR1 DNA Mariner 0 1287 230 1644 149 0 76 chr6 58306672 58306974 -130972580 + L1PB1 LINE L1 5870 6148 -3 9147 106 6 29 chr6 58306974 58307199 -130972355 - HSMAR1 DNA Mariner -1057 230 1 1672 188 21 9 chr6 58307199 58307662 -130971892 - L1MC1 LINE L1 -745 5401 4981 1154 239 16 27 chr6 58307710 58308404 -130971150 - L1M4 LINE L1 -855 5291 4591 411 38 0 0 chr6 58308404 58308457 -130971097 + (TTTAA)n Simple_repeat Simple_repeat 3 55 0 2316 71 0 3 chr6 58308457 58308740 -130970814 - AluY SINE Alu -29 282 1 1154 239 16 27 chr6 58308740 58309253 -130970301 - L1M4 LINE L1 -1553 4593 3988 * 7314 152 39 26 chr6 58309252 58309290 -130970264 - L1MCa LINE L1 -5071 1355 1319 2110 112 3 7 chr6 58309290 58309586 -130969968 - AluSq SINE Alu -6 307 13 7314 152 39 26 chr6 58309586 58310867 -130968687 - L1MCa LINE L1 -5107 1319 19 267 297 20 10 chr6 58311265 58311366 -130968188 - MIR SINE MIR 0 262 161 515 291 115 0 chr6 58311437 58311602 -130967952 - MIR SINE MIR -71 191 8 344 174 0 14 chr6 58312183 58312253 -130967301 - AluS SINE Alu -245 57 5 * 416 198 2 4 chr6 58312240 58312334 -130967220 + MLT1A1 LTR MaLR 288 364 -1 2026 115 10 14 chr6 58312422 58312717 -130966837 + AluSx SINE Alu 1 294 -18 775 274 138 43 chr6 58314713 58315461 -130964093 + L2 LINE L2 2464 3286 -27 1518 166 65 11 chr6 58315807 58316085 -130963469 - AluSx SINE Alu -17 295 3 195 276 0 17 chr6 58317025 58317083 -130962471 - L2 LINE L2 0 3313 3257 2002 134 0 20 chr6 58317384 58317683 -130961871 + AluSx SINE Alu 1 293 -19 2112 115 24 0 chr6 58317722 58318018 -130961536 + AluSx SINE Alu 1 303 -9 269 228 237 26 chr6 58318581 58318695 -130960859 + L2 LINE L2 3160 3297 -16 33 0 0 0 chr6 58318814 58318847 -130960707 + AT_rich Low_complexity Low_complexity 1 33 0 558 257 128 40 chr6 58318851 58319248 -130960306 - L1ME4a LINE L1 -24 6097 5666 261 234 328 8 chr6 58319293 58319421 -130960133 - MIR SINE MIR -9 253 85 249 167 0 0 chr6 58319434 58319476 -130960078 - L1ME4a LINE L1 -518 5603 5562 218 245 78 49 chr6 58319529 58319631 -130959923 - L3b LINE CR1 -132 1451 1347 21 0 0 0 chr6 58320927 58320948 -130958606 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr6 58322299 58322335 -130957219 + AT_rich Low_complexity Low_complexity 1 36 0 2089 137 0 0 chr6 58322340 58322639 -130956915 - AluSx SINE Alu -13 299 1 222 254 55 0 chr6 58323249 58323304 -130956250 + MIR SINE MIR 115 172 -90 870 137 30 15 chr6 58323478 58323609 -130955945 - FLAM_C SINE Alu 0 133 1 679 183 60 9 chr6 58324332 58324612 -130954942 - LTR54 LTR ERV1 0 510 171 645 112 0 0 chr6 58324639 58324728 -130954826 - LTR54B LTR ERV1 -408 90 2 1912 126 6 60 chr6 58324843 58325160 -130954394 + AluSx SINE Alu 1 300 -12 1306 224 57 54 chr6 58325402 58325809 -130953745 + LTR37A LTR ERV1 19 426 0 1105 225 116 131 chr6 58325982 58326371 -130953183 - HAL1 LINE L1 -569 1938 1545 709 246 0 0 chr6 58326371 58326501 -130953053 - FLAM_A SINE Alu -3 130 1 1105 225 116 131 chr6 58326501 58326559 -130952995 - HAL1 LINE L1 -962 1545 1488 1167 79 11 6 chr6 58326559 58326737 -130952817 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1952 128 4 0 chr6 58326745 58327018 -130952536 - AluSx SINE Alu -38 274 1 2202 120 0 7 chr6 58327023 58327324 -130952230 - AluSq SINE Alu -14 299 1 1105 225 116 131 chr6 58327324 58327866 -130951688 - HAL1 LINE L1 -1030 1477 948 1151 219 20 4 chr6 58327896 58328143 -130951411 - L1MEc LINE L1 -6095 301 51 258 32 0 0 chr6 58328160 58328191 -130951363 + (TG)n Simple_repeat Simple_repeat 2 32 0 300 301 75 45 chr6 58328528 58328930 -130950624 - L1M4 LINE L1 -2212 3934 3521 223 258 16 32 chr6 58329252 58329314 -130950240 + MIR SINE MIR 7 67 -195 411 241 283 5 chr6 58329472 58329663 -130949891 - MIR SINE MIR -14 248 5 1111 174 11 16 chr6 58329693 58329883 -130949671 + MER5A DNA MER1_type 1 189 0 833 262 130 81 chr6 58331647 58332178 -130947376 + LTR67 LTR ERVL 1 557 0 259 235 103 0 chr6 58332179 58332247 -130947307 - MIR SINE MIR -60 202 128 2171 119 0 22 chr6 58332247 58332567 -130946987 - AluSq SINE Alu 0 313 1 309 381 88 5 chr6 58333741 58333956 -130945598 - MIR SINE MIR -6 256 24 1608 191 0 34 chr6 58334340 58334686 -130944868 - AluJo SINE Alu 0 312 1 1855 145 11 7 chr6 58335210 58335493 -130944061 + AluJb SINE Alu 1 284 -28 327 85 0 0 chr6 58335497 58335544 -130944010 + (GGGGA)n Simple_repeat Simple_repeat 5 51 0 872 154 0 0 chr6 58335706 58335829 -130943725 + FLAM_C SINE Alu 1 123 -20 562 286 6 18 chr6 58336289 58336460 -130943094 - LTR16A LTR ERVL -264 186 18 266 359 18 12 chr6 58336626 58336793 -130942761 - HERVL LTR ERVL -312 5342 5175 1922 287 44 6 chr6 58337035 58337582 -130941972 - HERV16 LTR ERVL -2760 2236 1669 3364 291 59 56 chr6 58337619 58338069 -130941485 - HERV16 LTR ERVL -3443 1553 1106 2223 66 10 23 chr6 58338069 58338372 -130941182 - AluY SINE Alu -12 299 1 3364 291 59 56 chr6 58338372 58339024 -130940530 - HERV16 LTR ERVL -3890 1106 457 2144 110 0 0 chr6 58339024 58339305 -130940249 - AluSx SINE Alu -23 289 9 3364 291 59 56 chr6 58339305 58339373 -130940181 - HERV16 LTR ERVL -4539 457 391 2031 122 0 14 chr6 58339373 58339659 -130939895 - AluSx SINE Alu -29 283 2 3364 291 59 56 chr6 58339659 58340035 -130939519 - HERV16 LTR ERVL -4605 391 1 1124 308 58 7 chr6 58340035 58340451 -130939103 - LTR16A LTR ERVL 0 450 14 966 107 20 0 chr6 58340546 58340695 -130938859 - L1MA5A LINE L1 0 6297 6146 356 209 76 76 chr6 58340800 58340958 -130938596 + MIR3 SINE MIR 1 158 -50 5578 168 30 29 chr6 58340964 58342050 -130937504 + L1MD2 LINE L1 5254 6341 -18 571 348 35 66 chr6 58342177 58342484 -130937070 - L2 LINE L2 0 3272 2982 1778 111 0 0 chr6 58342484 58342718 -130936836 + AluSc SINE Alu 1 234 -75 571 348 35 66 chr6 58342718 58342864 -130936690 - L2 LINE L2 -290 2982 2833 184 330 53 32 chr6 58342929 58343023 -130936531 + L3b LINE CR1 1341 1436 -147 1864 174 0 3 chr6 58343365 58343670 -130935884 - AluSx SINE Alu -8 304 1 404 335 90 12 chr6 58344809 58344976 -130934578 + MLT1I LTR MaLR 212 391 -18 24 53 0 0 chr6 58345113 58345151 -130934403 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr6 58345303 58345339 -130934215 + AT_rich Low_complexity Low_complexity 1 36 0 310 259 35 5 chr6 58345368 58345588 -130933966 - L1ME LINE L1 -238 5932 5664 400 254 46 46 chr6 58345593 58345790 -130933764 + L1ME LINE L1 5410 5606 -556 424 204 0 0 chr6 58346024 58346112 -130933442 + MIR SINE MIR 174 261 -1 535 252 15 8 chr6 58347201 58347332 -130932222 - MIR3 SINE MIR -6 202 71 721 284 139 3 chr6 58348301 58348667 -130930887 - L1ME4a LINE L1 -37 6084 5669 2898 185 13 55 chr6 58348840 58349119 -130930435 + MER82 DNA MER2_type 2 291 -362 2145 76 0 32 chr6 58349119 58349396 -130930158 + AluY SINE Alu 24 291 -20 2898 185 13 55 chr6 58349396 58349733 -130929821 + MER82 DNA MER2_type 291 592 -61 376 249 49 49 chr6 58349787 58349972 -130929582 + MLT1L LTR MaLR 423 607 -8 1332 202 72 14 chr6 58350051 58350343 -130929211 - AluJb SINE Alu -3 309 1 298 299 10 10 chr6 58351104 58351201 -130928353 - LTR67 LTR ERVL -3 554 458 766 273 11 0 chr6 58352273 58352449 -130927105 - MER45A DNA AcHobo 0 178 1 2499 224 28 16 chr6 58352620 58353128 -130926426 - MLT2B1 LTR ERVL -4 516 3 364 261 48 67 chr6 58353746 58353911 -130925643 + MIR SINE MIR 73 234 -28 180 0 0 0 chr6 58354321 58354341 -130925213 + (A)n Simple_repeat Simple_repeat 1 20 0 465 257 0 0 chr6 58354752 58354853 -130924701 - MER58 DNA MER1_type -3 2417 2317 2093 132 3 0 chr6 58354858 58355153 -130924401 + AluSq SINE Alu 1 296 -17 2039 154 0 0 chr6 58355183 58355481 -130924073 + AluJb SINE Alu 1 298 -14 820 290 73 89 chr6 58355489 58355796 -130923758 - L1MEd LINE L1 -5167 952 641 1714 111 0 12 chr6 58355796 58356049 -130923505 - L1MA2 LINE L1 0 6304 6055 820 290 73 89 chr6 58356049 58356252 -130923302 - L1MEd LINE L1 -5478 641 436 7732 41 4 3 chr6 58356252 58357223 -130922331 + L1PA6 LINE L1 5183 6154 0 820 290 73 89 chr6 58357223 58357541 -130922013 - L1MEd LINE L1 -5683 436 137 324 0 0 0 chr6 58357541 58357577 -130921977 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 820 290 73 89 chr6 58357577 58357655 -130921899 - L1MEd LINE L1 -5982 137 59 2067 146 3 0 chr6 58357706 58358001 -130921553 - AluSx SINE Alu -16 296 1 1642 245 140 11 chr6 58358044 58358522 -130921032 + MLT1F LTR MaLR 3 542 0 2215 154 39 31 chr6 58359209 58359751 -130919803 - MLT2A2 LTR ERVL 0 554 1 15907 99 5 3 chr6 58359751 58361852 -130917702 - HERVL-A2 LTR ERVL 0 5654 3550 * 24243 102 21 10 chr6 58361847 58365191 -130914363 - HERVL-A2 LTR ERVL -2272 3382 1 1792 161 81 67 chr6 58365191 58365727 -130913827 - MLT2A2 LTR ERVL 0 554 1 308 294 137 34 chr6 58365798 58365944 -130913610 + MER91A DNA MER1_type 9 169 -27 2232 125 31 23 chr6 58367134 58367486 -130912068 - L1PA16 LINE L1 0 6166 5812 1571 122 13 4 chr6 58367539 58367777 -130911777 - L1PA16 LINE L1 -347 5819 5580 271 169 108 0 chr6 58368175 58368240 -130911314 - L1ME2 LINE L1 0 6164 6093 590 324 32 9 chr6 58368532 58368748 -130910806 - MIR SINE MIR -7 255 35 359 303 63 14 chr6 58368768 58368910 -130910644 - L2 LINE L2 -7 3306 3158 466 243 0 19 chr6 58369692 58369795 -130909759 + MER5B DNA MER1_type 78 178 0 372 327 75 15 chr6 58369805 58370004 -130909550 + MIR SINE MIR 20 230 -32 496 332 102 8 chr6 58370607 58370842 -130908712 - MIR SINE MIR 0 262 6 558 199 90 19 chr6 58371028 58371184 -130908370 - MER53 DNA DNA 0 189 23 274 329 95 19 chr6 58371362 58371520 -130908034 - L2 LINE L2 -189 3083 2914 360 111 0 0 chr6 58372020 58372074 -130907480 + (A)n Simple_repeat Simple_repeat 1 54 0 19085 36 8 7 chr6 58372722 58375662 -130903892 + L1PA4 LINE L1 3214 6154 -1 681 174 23 159 chr6 58375770 58375894 -130903660 + L1ME2 LINE L1 5941 6014 -150 2065 140 3 0 chr6 58375894 58376194 -130903360 + AluSx SINE Alu 1 301 -11 681 174 23 159 chr6 58376194 58376327 -130903227 + L1ME2 LINE L1 6014 6163 -1 1802 180 0 7 chr6 58376583 58376872 -130902682 + AluJb SINE Alu 1 287 -25 461 219 61 128 chr6 58377037 58377334 -130902220 + MLT1J LTR MaLR 92 368 -143 314 289 70 26 chr6 58377538 58377652 -130901902 + L2 LINE L2 3149 3267 -5 209 336 16 56 chr6 58377740 58377865 -130901689 - L3b LINE CR1 -184 1399 1280 894 231 29 34 chr6 58378044 58378252 -130901302 - MER63A DNA MER1_type -3 207 1 267 254 133 77 chr6 58378365 58378422 -130901132 - MIR SINE MIR -71 191 139 2674 183 28 24 chr6 58378422 58378925 -130900629 - MLT1D LTR MaLR 0 505 1 267 254 133 77 chr6 58378925 58379048 -130900506 - MIR SINE MIR -123 139 1 2002 141 3 0 chr6 58379273 58379580 -130899974 - AluSx SINE Alu 0 308 1 220 326 53 21 chr6 58379947 58380042 -130899512 + MIR SINE MIR 37 134 -74 862 271 32 20 chr6 58380079 58380330 -130899224 + MIR SINE MIR 5 258 -4 630 233 9 0 chr6 58380344 58380460 -130899094 + MER5A DNA MER1_type 2 118 -71 377 281 70 53 chr6 58380481 58380652 -130898902 - MIR SINE MIR -72 190 17 * 472 155 24 36 chr6 58380617 58380701 -130898853 + MER5A DNA MER1_type 106 188 -1 220 208 21 0 chr6 58380705 58380753 -130898801 + MIR3 SINE MIR 156 204 -4 232 273 45 0 chr6 58381060 58381126 -130898428 + MIR SINE MIR 119 187 -75 370 333 43 48 chr6 58382347 58382578 -130896976 - MIR SINE MIR -13 249 20 575 324 48 34 chr6 58383096 58383451 -130896103 - L2 LINE L2 -1169 2145 1786 2731 150 20 49 chr6 58383472 58383960 -130895594 - L1PA16 LINE L1 -18 6148 5675 204 40 0 0 chr6 58386255 58386280 -130893274 + (TC)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr6 58386282 58386307 -130893247 + (CA)n Simple_repeat Simple_repeat 1 25 0 314 222 25 0 chr6 58388779 58388860 -130890694 - MIR SINE MIR -46 216 134 293 271 56 19 chr6 58389257 58389364 -130890190 - L1MC5 LINE L1 -36 7925 7815 192 309 74 42 chr6 58390042 58390211 -130889343 - L2 LINE L2 -302 3011 2836 202 209 0 23 chr6 58391059 58391102 -130888452 + L3 LINE CR1 1512 1553 -24 344 204 12 151 chr6 58392432 58392604 -130886950 + MER103 DNA DNA 6 153 -13 572 164 9 9 chr6 58392779 58392889 -130886665 + L1MB1 LINE L1 4945 5054 -1092 24209 167 25 36 chr6 58392911 58394844 -130884710 + L1PA11 LINE L1 10 1964 -4525 1913 172 3 0 chr6 58394844 58395147 -130884407 + AluSx SINE Alu 1 304 -8 24209 167 25 36 chr6 58395147 58399740 -130879814 + L1PA11 LINE L1 1964 6489 0 1597 183 16 19 chr6 58399738 58400183 -130879371 + L1MB1 LINE L1 5042 5478 -690 * 11195 32 2 0 chr6 58400187 58402211 -130877343 - L1PA4 LINE L1 -4 6151 4127 10771 36 1 0 chr6 58402211 58403504 -130876050 + L1P LINE L1 2874 4167 -1979 3938 130 46 24 chr6 58403529 58404184 -130875370 + L1MB1 LINE L1 5493 6161 -7 1737 133 108 0 chr6 58404261 58404540 -130875014 - AluSx SINE Alu -3 309 1 1870 162 3 7 chr6 58404592 58404895 -130874659 - AluJb SINE Alu -10 302 1 1248 202 14 126 chr6 58404919 58405038 -130874516 + L1ME2 LINE L1 5443 5574 -590 4257 101 82 2 chr6 58405038 58405634 -130873920 + LTR9B LTR ERV1 1 644 0 1248 202 14 126 chr6 58405634 58405950 -130873604 + L1ME2 LINE L1 5574 5829 -335 2572 204 2 0 chr6 58406258 58406768 -130872786 - L1PA16 LINE L1 -856 5290 4780 * 3532 172 139 8 chr6 58406767 58407159 -130872395 + L1PA16 LINE L1 5285 5624 -542 2268 118 0 6 chr6 58407159 58407473 -130872081 + AluSx SINE Alu 1 312 0 3532 172 139 8 chr6 58407473 58407849 -130871705 + L1PA16 LINE L1 5624 6154 -12 1108 231 107 56 chr6 58408008 58408437 -130871117 + L1MD2 LINE L1 5828 6278 -81 221 419 0 0 chr6 58408596 58408670 -130870884 + L2 LINE L2 3161 3234 -38 548 261 46 0 chr6 58408690 58408843 -130870711 + MIR SINE MIR 59 218 -44 381 265 77 17 chr6 58409334 58409451 -130870103 - L2 LINE L2 0 3313 3190 197 274 161 0 chr6 58409465 58409527 -130870027 + L2 LINE L2 3242 3313 0 1953 104 75 4 chr6 58409867 58410145 -130869409 - AluSp SINE Alu -15 298 1 183 347 116 21 chr6 58411441 58411536 -130868018 - MER5A DNA MER1_type -27 162 59 217 294 0 88 chr6 58411550 58411606 -130867948 + MER5B DNA MER1_type 6 51 -127 3430 106 35 27 chr6 58411606 58412091 -130867463 + L1PA13 LINE L1 5627 6118 -45 336 102 0 0 chr6 58412091 58412140 -130867414 + (CA)n Simple_repeat Simple_repeat 2 50 0 3430 106 35 27 chr6 58412140 58412172 -130867382 + L1PA13 LINE L1 6118 6148 -15 217 294 0 88 chr6 58412172 58412217 -130867337 + MER5B DNA MER1_type 51 98 -80 538 289 8 0 chr6 58412227 58412355 -130867199 - MER5B DNA MER1_type -48 130 2 366 278 117 43 chr6 58412508 58412570 -130866984 + MER5A DNA MER1_type 14 70 -119 2087 93 43 13 chr6 58412570 58412871 -130866683 + AluSg SINE Alu 1 310 0 366 278 117 43 chr6 58412871 58412970 -130866584 + MER5A DNA MER1_type 70 187 -2 191 271 0 51 chr6 58412978 58413037 -130866517 - MER5A DNA MER1_type -108 81 26 232 200 0 0 chr6 58413157 58413197 -130866357 + MER5A DNA MER1_type 150 189 0 263 326 110 45 chr6 58413298 58413697 -130865857 - L3 LINE CR1 -260 1317 893 554 264 125 5 chr6 58413839 58414047 -130865507 + MIR SINE MIR 28 260 -2 22 56 0 0 chr6 58415770 58415806 -130863748 + AT_rich Low_complexity Low_complexity 1 36 0 417 20 0 0 chr6 58416144 58416194 -130863360 + (CA)n Simple_repeat Simple_repeat 2 51 0 56 79 0 0 chr6 58417152 58417278 -130862276 + AT_rich Low_complexity Low_complexity 1 126 0 1749 139 60 7 chr6 58417515 58417796 -130861758 - AluSq SINE Alu -17 296 1 218 95 0 71 chr6 58418346 58418388 -130861166 + (CTGGGG)n Simple_repeat Simple_repeat 5 43 0 27 62 0 0 chr6 58418429 58418477 -130861077 + AT_rich Low_complexity Low_complexity 1 48 0 572 256 69 31 chr6 58418726 58418757 -130860797 - MIR3 SINE MIR -23 185 157 1884 165 76 22 chr6 58418757 58419127 -130860427 + MLT1B LTR MaLR 1 390 0 572 256 69 31 chr6 58419127 58419255 -130860299 - MIR3 SINE MIR -51 157 20 442 297 20 7 chr6 58419439 58419587 -130859967 - L2 LINE L2 -619 2695 2546 190 204 65 97 chr6 58419608 58419701 -130859853 - MIR SINE MIR -99 109 20 23 0 0 0 chr6 58421148 58421171 -130858383 + AT_rich Low_complexity Low_complexity 1 23 0 2111 110 0 0 chr6 58421308 58421590 -130857964 + AluSx SINE Alu 22 303 -9 2286 116 3 0 chr6 58422524 58422835 -130856719 + AluSx SINE Alu 1 312 0 298 336 29 0 chr6 58423213 58423317 -130856237 + MIR3 SINE MIR 72 178 -30 466 234 153 8 chr6 58423976 58424100 -130855454 - MIR SINE MIR -111 151 10 240 176 73 132 chr6 58425131 58425267 -130854287 + L1MC4 LINE L1 7909 8036 -6 214 186 0 23 chr6 58426871 58426914 -130852640 + (TATG)n Simple_repeat Simple_repeat 2 43 0 1803 149 0 0 chr6 58426972 58427233 -130852321 - AluSx SINE Alu -47 265 5 674 289 83 18 chr6 58427233 58427510 -130852044 - L1MC4a LINE L1 -1897 5911 5617 2389 56 0 10 chr6 58427559 58427863 -130851691 + AluY SINE Alu 1 301 -10 301 322 40 67 chr6 58428752 58428901 -130850653 + L2 LINE L2 3124 3268 -4 435 19 0 0 chr6 58428947 58428999 -130850555 + (TG)n Simple_repeat Simple_repeat 2 53 0 619 134 96 33 chr6 58429088 58429248 -130850306 + MER104 DNA Tc2 1 180 0 2288 139 147 5 chr6 58429257 58429632 -130849922 - MSTA LTR MaLR 0 428 1 202 320 20 0 chr6 58429702 58429752 -130849802 + L2 LINE L2 3210 3260 -12 264 213 79 5 chr6 58429944 58430016 -130849538 - MIR SINE MIR -87 121 46 186 237 103 72 chr6 58431797 58431894 -130847660 - MIR SINE MIR -75 187 88 400 279 42 24 chr6 58432416 58432581 -130846973 - MIR SINE MIR -50 212 45 186 397 80 26 chr6 58432646 58432797 -130846757 + L2 LINE L2 3076 3234 -38 501 252 106 120 chr6 58432879 58433737 -130845817 + L1MEc LINE L1 1565 2410 -3986 1878 120 133 3 chr6 58434348 58434664 -130844890 + MER46B DNA MER2_type 5 236 0 454 274 188 19 chr6 58436012 58436220 -130843334 - MIR SINE MIR -5 257 15 525 271 26 26 chr6 58436458 58436609 -130842945 - MER5B DNA MER1_type -27 151 1 267 133 0 0 chr6 58436623 58436668 -130842886 + (TG)n Simple_repeat Simple_repeat 1 45 0 430 153 0 14 chr6 58437385 58437457 -130842097 - Tigger7 DNA MER2_type -21 2466 2396 * 3195 145 17 28 chr6 58437451 58437982 -130841572 - Tigger7 DNA MER2_type -208 525 1 315 309 164 40 chr6 58438323 58438524 -130841030 - MIR SINE MIR -27 235 10 2289 112 0 3 chr6 58438979 58439282 -130840272 - AluSq SINE Alu -11 302 1 22 0 0 0 chr6 58439479 58439501 -130840053 + AT_rich Low_complexity Low_complexity 1 22 0 1850 148 7 0 chr6 58439766 58440049 -130839505 + AluJb SINE Alu 5 289 -23 193 175 140 53 chr6 58440439 58440496 -130839058 + MIR SINE MIR 85 146 -116 270 94 52 229 chr6 58441590 58441614 -130837940 - MADE1 DNA Mariner -1 79 52 1827 153 34 3 chr6 58441614 58441908 -130837646 + AluSx SINE Alu 1 303 -9 270 94 52 229 chr6 58441908 58441979 -130837575 - MADE1 DNA Mariner -28 52 1 1623 138 13 0 chr6 58442022 58442254 -130837300 - AluSq SINE Alu -74 239 5 1048 203 77 0 chr6 58442315 58442522 -130837032 - MER58A DNA MER1_type -1 223 1 2098 123 0 17 chr6 58442894 58443194 -130836360 - AluSx SINE Alu -17 295 1 311 360 43 0 chr6 58443368 58443532 -130836022 + MIR SINE MIR 16 185 -66 3120 261 92 16 chr6 58445903 58447214 -130832340 - L2 LINE L2 0 3313 1908 409 255 13 34 chr6 58447261 58447410 -130832144 + MER104 DNA Tc2 35 180 0 2221 85 46 0 chr6 58447765 58448047 -130831507 + AluSx SINE Alu 1 295 -17 264 30 0 0 chr6 58448892 58448925 -130830629 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 770 228 84 23 chr6 58448993 58449208 -130830346 + MIR SINE MIR 18 245 -17 2487 86 0 3 chr6 58450606 58450919 -130828635 - AluSx SINE Alu 0 312 1 210 284 247 25 chr6 58451195 58451357 -130828197 - MIR SINE MIR -57 205 8 727 274 51 8 chr6 58451606 58451843 -130827711 + MIR SINE MIR 2 248 -14 521 255 28 21 chr6 58452548 58452693 -130826861 + MIR3 SINE MIR 21 166 -42 507 78 0 0 chr6 58452708 58452785 -130826769 + (CA)n Simple_repeat Simple_repeat 2 78 0 23 0 0 0 chr6 58452908 58452931 -130826623 + AT_rich Low_complexity Low_complexity 1 23 0 35124 79 7 10 chr6 58453622 58459189 -130820365 + L1PA6 LINE L1 608 6154 0 386 259 99 23 chr6 58459551 58459682 -130819872 - MIR3 SINE MIR -53 155 15 559 222 146 41 chr6 58460060 58460231 -130819323 + MER58A DNA MER1_type 1 189 -35 234 29 29 0 chr6 58460493 58460527 -130819027 + (TTTTG)n Simple_repeat Simple_repeat 2 160 0 2090 113 7 0 chr6 58460527 58460811 -130818743 - AluSq SINE Alu -27 286 1 702 233 134 5 chr6 58461010 58461212 -130818342 - MIR SINE MIR -28 234 7 328 339 8 33 chr6 58461241 58461362 -130818192 - MIR3 SINE MIR -81 127 10 1122 196 25 0 chr6 58461872 58462076 -130817478 + MER3 DNA MER1_type 1 209 0 279 247 14 14 chr6 58462743 58462816 -130816738 + GA-rich Low_complexity Low_complexity 4 76 0 358 299 65 52 chr6 58464534 58464765 -130814789 + L1MC4 LINE L1 7629 7862 -180 233 175 63 0 chr6 58464793 58464856 -130814698 + (TA)n Simple_repeat Simple_repeat 2 68 0 2146 126 0 0 chr6 58464904 58465198 -130814356 - AluSx SINE Alu -16 296 3 423 241 23 15 chr6 58465216 58465349 -130814205 + L1MC4 LINE L1 7909 8042 0 23 0 0 0 chr6 58465350 58465373 -130814181 + AT_rich Low_complexity Low_complexity 1 23 0 962 124 226 11 chr6 58465517 58465624 -130813930 + MER30 DNA MER1_type 5 88 -142 2396 89 7 0 chr6 58465624 58465927 -130813627 + AluSp SINE Alu 2 306 -7 962 124 226 11 chr6 58465927 58466005 -130813549 + MER30 DNA MER1_type 88 230 0 964 253 121 54 chr6 58466074 58466596 -130812958 - L1ME4a LINE L1 -12 6109 5553 206 266 115 71 chr6 58467071 58467184 -130812370 + MIR3 SINE MIR 38 155 -53 366 271 52 0 chr6 58469095 58469191 -130810363 - MIR3 SINE MIR -24 184 84 226 288 92 98 chr6 58470290 58470453 -130809101 + MIR SINE MIR 51 212 -50 1887 148 3 26 chr6 58470553 58470857 -130808697 + AluSq SINE Alu 17 313 0 447 232 38 43 chr6 58470932 58471117 -130808437 + Charlie2 DNA MER1_type 2190 2373 -489 2722 248 70 20 chr6 58471182 58472041 -130807513 + L1ME3A LINE L1 5238 6136 -34 262 206 0 29 chr6 58472051 58472119 -130807435 + A-rich Low_complexity Low_complexity 4 69 0 2286 118 0 0 chr6 58473231 58473536 -130806018 + AluSx SINE Alu 1 305 -7 265 343 169 32 chr6 58474335 58475083 -130804471 - L2 LINE L2 -4 3309 2465 200 184 0 26 chr6 58475288 58475326 -130804228 + L3 LINE CR1 1524 1560 -17 273 259 102 19 chr6 58475858 58475966 -130803588 - MER5A DNA MER1_type -4 185 69 * 322 188 62 165 chr6 58475869 58476045 -130803509 + MER5A DNA MER1_type 32 189 0 253 249 73 45 chr6 58476181 58476358 -130803196 - L1ME4a LINE L1 -5 6116 5935 778 196 151 0 chr6 58476838 58477017 -130802537 + MER58A DNA MER1_type 1 206 -18 242 209 0 0 chr6 58477044 58477087 -130802467 + MER58A DNA MER1_type 182 224 0 287 247 26 0 chr6 58477225 58477302 -130802252 + L2 LINE L2 2709 2787 -527 363 296 142 50 chr6 58477313 58477573 -130801981 + L2 LINE L2 3030 3313 0 2208 75 4 4 chr6 58477658 58477961 -130801593 - AluSc SINE Alu 0 303 1 789 175 0 36 chr6 58478213 58478350 -130801204 - FLAM_C SINE Alu -1 132 1 2892 171 29 69 chr6 58479884 58480680 -130798874 + MER21B LTR ERV1 1 821 -110 604 228 48 18 chr6 58480746 58480913 -130798641 + MIR SINE MIR 81 252 -10 2196 125 0 10 chr6 58481030 58481342 -130798212 - AluSx SINE Alu -3 309 1 1153 161 44 80 chr6 58481717 58481991 -130797563 + AluJo SINE Alu 40 303 -9 1492 220 10 0 chr6 58482011 58482316 -130797238 + MER58B DNA MER1_type 34 341 0 339 282 31 43 chr6 58482316 58482474 -130797080 - MER103 DNA DNA -9 157 2 2158 94 3 17 chr6 58482728 58483025 -130796529 + AluSx SINE Alu 1 293 -19 21 0 0 0 chr6 58483045 58483066 -130796488 + AT_rich Low_complexity Low_complexity 1 21 0 506 236 32 131 chr6 58483192 58483523 -130796031 + L1ME LINE L1 5382 5681 -440 776 284 157 41 chr6 58483691 58484298 -130795256 + L2 LINE L2 2323 2997 -316 244 295 51 0 chr6 58484350 58484428 -130795126 + L2 LINE L2 3231 3312 -1 2543 171 24 0 chr6 58484994 58485408 -130794146 + MSTB LTR MaLR 1 424 -2 346 314 144 11 chr6 58486334 58486522 -130793032 + MIR SINE MIR 37 249 -13 245 282 13 13 chr6 58488875 58488953 -130790601 + MIR3 SINE MIR 125 202 -6 577 308 84 22 chr6 58489892 58490119 -130789435 + MIR SINE MIR 2 242 -20 1695 166 27 10 chr6 58490898 58491193 -130788361 - AluJo SINE Alu -12 300 1 23 0 0 0 chr6 58493051 58493074 -130786480 + GC_rich Low_complexity Low_complexity 1 23 0 553 197 0 61 chr6 58493811 58493943 -130785611 - MER5B DNA MER1_type -3 175 52 31 0 0 0 chr6 58494003 58494034 -130785520 + AT_rich Low_complexity Low_complexity 1 31 0 740 23 0 0 chr6 58495937 58496024 -130783530 + AluYb8 SINE Alu 231 317 -1 3637 107 2 4 chr6 58496211 58496715 -130782839 - MER9 LTR ERVK -8 503 1 5036 70 0 0 chr6 58496715 58497329 -130782225 - HERVK9 LTR ERVK 0 5916 5303 1325 45 0 0 chr6 58497415 58497572 -130781982 - HERVK9 LTR ERVK -2049 3867 3711 13718 49 15 2 chr6 58497579 58499218 -130780336 - HERVK9 LTR ERVK -3144 2772 1113 4572 55 11 3 chr6 58499219 58499783 -130779771 - HERVK9 LTR ERVK -5348 568 1 4037 92 2 4 chr6 58499783 58500295 -130779259 - MER9 LTR ERVK 0 511 1 1872 119 94 0 chr6 58500377 58500663 -130778891 + AluSq SINE Alu 1 313 0 225 94 0 0 chr6 58500663 58500695 -130778859 + (GA)n Simple_repeat Simple_repeat 2 33 0 625 23 57 0 chr6 58500699 58500787 -130778767 + (GAAAA)n Simple_repeat Simple_repeat 2 94 0 538 212 80 22 chr6 58501013 58501150 -130778404 + MLT1J LTR MaLR 66 210 -301 208 372 15 75 chr6 58501292 58501491 -130778063 + L2 LINE L2 2599 2785 -529 302 294 101 17 chr6 58501903 58502022 -130777532 + L2 LINE L2 3139 3267 -5 465 346 64 2 chr6 58502743 58502962 -130776592 + MIR SINE MIR 21 249 -13 529 257 0 78 chr6 58503145 58503324 -130776230 + MIR3 SINE MIR 38 202 -6 258 336 37 0 chr6 58503570 58503677 -130775877 - L2 LINE L2 -6 3266 3156 2383 101 0 0 chr6 58504296 58504594 -130774960 - AluSx SINE Alu -14 298 1 1947 126 3 26 chr6 58504777 58505087 -130774467 + AluSg SINE Alu 1 303 -7 2360 68 10 3 chr6 58505675 58505967 -130773587 + AluSp SINE Alu 1 294 -19 180 163 0 0 chr6 58506045 58506088 -130773466 + T-rich Low_complexity Low_complexity 1 43 0 188 324 132 55 chr6 58506296 58506515 -130773039 + L2 LINE L2 2621 2856 -458 210 328 172 8 chr6 58506681 58506809 -130772745 - L2 LINE L2 -1 3271 3123 191 311 33 0 chr6 58506835 58506896 -130772658 + L2 LINE L2 3210 3272 0 627 310 59 34 chr6 58507491 58507730 -130771824 - MIR SINE MIR -9 253 9 8896 155 26 11 chr6 58507947 58508261 -130771293 + L1MA8 LINE L1 3791 4099 -2192 2237 89 0 0 chr6 58508261 58508578 -130770976 - AluY SINE Alu 0 317 1 8896 155 26 11 chr6 58508578 58510666 -130768888 + L1MA8 LINE L1 4099 6230 -61 336 161 0 0 chr6 58510683 58510745 -130768809 + (TA)n Simple_repeat Simple_repeat 1 62 0 763 192 0 8 chr6 58510818 58510948 -130768606 + AluJo SINE Alu 7 135 -177 1860 174 0 3 chr6 58511006 58511317 -130768237 - AluJo SINE Alu -2 310 1 38519 89 8 8 chr6 58511360 58517510 -130762044 + L1PA6 LINE L1 11 6154 0 458 203 0 0 chr6 58518274 58518348 -130761206 + MER21B LTR ERV1 19 92 -771 3497 228 50 22 chr6 58518348 58519024 -130760530 + MER21B LTR ERV1 43 746 -117 3240 98 14 2 chr6 58519024 58519453 -130760101 - MER57B LTR ERV1 0 434 1 3497 228 50 22 chr6 58519453 58519564 -130759990 + MER21B LTR ERV1 746 852 -11 758 270 125 12 chr6 58519768 58520113 -130759441 + L2 LINE L2 2804 3187 -126 484 332 81 16 chr6 58520445 58520692 -130758862 - L2 LINE L2 -2058 1256 994 1995 191 40 70 chr6 58520705 58521175 -130758379 + MLT1D LTR MaLR 1 456 -49 357 24 0 0 chr6 58521177 58521219 -130758335 + (GA)n Simple_repeat Simple_repeat 1 42 0 471 316 13 7 chr6 58521369 58521521 -130758033 - MIR SINE MIR -3 259 107 417 296 122 35 chr6 58521795 58522025 -130757529 - MIR SINE MIR 0 262 13 632 192 8 17 chr6 58522101 58522221 -130757333 + MLT1D LTR MaLR 59 177 -328 236 254 0 51 chr6 58522603 58522662 -130756892 - L2 LINE L2 -13 3300 3245 6323 118 25 13 chr6 58522672 58523908 -130755646 + L1PB1 LINE L1 4911 6151 0 366 317 90 15 chr6 58523939 58524203 -130755351 - L2 LINE L2 -296 3017 2740 1994 100 37 0 chr6 58524310 58524579 -130754975 - AluSx SINE Alu -12 300 22 481 268 82 65 chr6 58524751 58525057 -130754497 + L1ME4a LINE L1 5597 5907 -214 318 67 0 0 chr6 58526622 58526667 -130752887 + (CA)n Simple_repeat Simple_repeat 1 45 0 183 301 0 84 chr6 58526768 58526851 -130752703 + MIR3 SINE MIR 131 206 -2 480 281 16 8 chr6 58527637 58527765 -130751789 + L2 LINE L2 3144 3272 0 1894 169 75 65 chr6 58527771 58528251 -130751303 - MER31A LTR ERV1 0 485 1 471 87 0 0 chr6 58528251 58528320 -130751234 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 1598 104 0 5 chr6 58529772 58529984 -130749570 - AluSc SINE Alu -6 303 93 514 335 120 34 chr6 58580162 58580530 -130699024 - L2 LINE L2 -602 2712 2284 1332 214 62 37 chr6 58580530 58580676 -130698878 + MLT1A1 LTR MaLR 1 142 -223 1691 196 10 16 chr6 58580676 58580988 -130698566 + AluJb SINE Alu 2 311 -1 1332 214 62 37 chr6 58580988 58581196 -130698358 + MLT1A1 LTR MaLR 142 364 -1 514 335 120 34 chr6 58581196 58581352 -130698202 - L2 LINE L2 -1030 2284 2143 1695 210 40 0 chr6 58581449 58581820 -130697734 + MSTD LTR MaLR 3 388 -8 1062 188 4 61 chr6 58582958 58583187 -130696367 - AluJo SINE Alu -80 232 17 308 179 179 28 chr6 58583207 58583313 -130696241 - L1MB8 LINE L1 0 6178 6057 378 212 0 0 chr6 58583430 58583515 -130696039 + L1MB7 LINE L1 5742 5826 -358 * 785 229 53 18 chr6 58583499 58583783 -130695771 + L1M4 LINE L1 2756 3049 -3097 2243 114 0 3 chr6 58584075 58584372 -130695182 + AluSx SINE Alu 1 296 -16 2390 71 0 0 chr6 58584376 58584671 -130694883 + AluY SINE Alu 1 295 -16 28 0 0 0 chr6 58584678 58584706 -130694848 + AT_rich Low_complexity Low_complexity 1 28 0 4605 235 68 26 chr6 58584706 58585583 -130693971 + L1M4 LINE L1 3096 3935 -2211 2199 119 0 19 chr6 58585583 58585895 -130693659 + AluSq SINE Alu 1 306 -7 4605 235 68 26 chr6 58585895 58586756 -130692798 + L1M4 LINE L1 3935 4907 -1239 790 193 0 6 chr6 58586749 58586920 -130692634 - L1MC3 LINE L1 -2 7783 7614 * 1321 184 0 35 chr6 58586920 58587148 -130692406 + AluJo SINE Alu 1 220 -92 606 203 0 74 chr6 58587150 58587276 -130692278 + L1MB7 LINE L1 5993 6106 -78 1847 168 10 10 chr6 58587276 58587585 -130691969 + AluJo SINE Alu 1 309 -3 606 203 0 74 chr6 58587585 58587621 -130691933 + L1MB7 LINE L1 6106 6143 -41 2306 118 0 0 chr6 58587979 58588285 -130691269 + AluSx SINE Alu 1 306 -6 264 40 60 0 chr6 58588453 58588503 -130691051 + (TG)n Simple_repeat Simple_repeat 2 54 0 1088 169 0 84 chr6 58590118 58590331 -130689223 + AluJo SINE Alu 87 281 -31 207 0 0 0 chr6 58590336 58590359 -130689195 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 933 266 70 21 chr6 58590393 58590720 -130688834 + LTR16C LTR ERVL 75 417 -74 2153 187 39 104 chr6 58590722 58591464 -130688090 - LTR8A LTR ERV1 0 727 34 287 197 0 30 chr6 58591483 58591549 -130688005 + LTR16C LTR ERVL 424 487 -4 4317 167 20 65 chr6 58591566 58592451 -130687103 - L1MB4 LINE L1 -1 6179 5256 790 158 0 0 chr6 58592451 58592603 -130686951 - FLAM_C SINE Alu 0 152 1 4317 167 20 65 chr6 58592603 58592888 -130686666 - L1MB4 LINE L1 -924 5256 5061 639 206 38 23 chr6 58592888 58593019 -130686535 - FLAM_A SINE Alu 0 133 1 4317 167 20 65 chr6 58593019 58593138 -130686416 - L1MB4 LINE L1 -1119 5061 4938 1628 157 91 14 chr6 58595494 58595780 -130683774 - AluSx SINE Alu -4 308 1 2049 110 0 30 chr6 58596152 58596453 -130683101 + AluSx SINE Alu 1 292 -20 1589 171 0 18 chr6 58596505 58596791 -130682763 - AluJo SINE Alu -31 281 1 2358 121 28 6 chr6 58598052 58598408 -130681146 + THE1B LTR MaLR 1 364 0 1612 167 4 19 chr6 58598524 58598787 -130680767 + AluJo SINE Alu 38 296 -16 423 144 33 11 chr6 58598814 58598904 -130680650 + MER2 DNA MER2_type 101 192 -153 4083 152 13 15 chr6 58598905 58599621 -130679933 + MER72 LTR ERV1 9 722 0 4793 66 10 2 chr6 58600094 58600716 -130678838 - L1PA8 LINE L1 -3 6169 5543 1168 155 186 21 chr6 58600812 58601103 -130678451 + MER4B-int LTR ERV1 1044 1382 -4949 2326 189 59 104 chr6 58601206 58601967 -130677587 + LTR8A LTR ERV1 1 727 0 1322 129 50 43 chr6 58601971 58602000 -130677554 + MER4B-int LTR ERV1 1372 1399 -4932 1964 135 75 77 chr6 58602000 58602429 -130677125 - MSTA LTR MaLR 0 428 1 8777 137 36 84 chr6 58602429 58604164 -130675390 - MSTA-int LTR MaLR 0 1651 1 2035 120 33 147 chr6 58604165 58604647 -130674907 - MSTA LTR MaLR -1 427 1 1322 129 50 43 chr6 58604647 58604892 -130674662 + MER4B-int LTR ERV1 1398 1651 -4680 758 149 16 0 chr6 58604892 58605013 -130674541 + FRAM SINE Alu 46 168 -8 394 195 39 0 chr6 58605021 58605098 -130674456 + MER4B-int LTR ERV1 1856 1935 -4396 1174 97 62 0 chr6 58605100 58605276 -130674278 - MSTA LTR MaLR 0 428 242 287 230 126 0 chr6 58605278 58605365 -130674189 + LTR10A LTR ERV1 1 98 -511 1467 135 138 36 chr6 58605411 58605744 -130673810 + LTR10A LTR ERV1 181 547 -62 1265 167 39 0 chr6 58605758 58605992 -130673562 - MSTA LTR MaLR -185 243 1 1083 272 39 7 chr6 58605992 58606297 -130673257 + MER4B-int LTR ERV1 1933 2247 -4084 345 231 0 0 chr6 58606319 58606412 -130673142 + MER4B-int LTR ERV1 856 2726 -3220 2088 140 0 3 chr6 58606412 58606720 -130672834 + AluSx SINE Alu 1 307 -5 959 186 85 67 chr6 58606759 58607161 -130672393 + MER4B-int LTR ERV1 1181 2866 -3528 347 231 0 0 chr6 58607170 58607235 -130672319 + MER2 DNA MER2_type 280 344 -1 * 453 233 0 0 chr6 58607235 58607320 -130672234 + Tigger7 DNA MER2_type 2402 2486 -1 354 214 57 156 chr6 58607598 58607790 -130671764 + L2 LINE L2 2296 2468 -846 1900 168 0 7 chr6 58607858 58608161 -130671393 - AluJb SINE Alu -11 301 1 1470 167 57 30 chr6 58608423 58608686 -130670868 + AluJo SINE Alu 19 288 -24 198 0 0 0 chr6 58609003 58609025 -130670529 + (T)n Simple_repeat Simple_repeat 1 22 0 288 0 0 0 chr6 58609094 58609126 -130670428 + (TG)n Simple_repeat Simple_repeat 2 33 0 266 274 49 39 chr6 58609260 58609362 -130670192 + L1ME1 LINE L1 374 476 -5920 1606 243 19 56 chr6 58609736 58610159 -130669395 + L1ME1 LINE L1 775 1171 -5238 1924 135 3 58 chr6 58610159 58610484 -130669070 + AluSx SINE Alu 1 307 -5 1606 243 19 56 chr6 58610484 58610653 -130668901 + L1ME1 LINE L1 1171 1345 -5064 810 186 0 0 chr6 58610656 58610780 -130668774 + FLAM_C SINE Alu 1 124 -19 292 245 14 65 chr6 58610784 58610923 -130668631 + L1ME1 LINE L1 1332 1463 -4943 * 2589 237 24 52 chr6 58610909 58611736 -130667818 + L1ME1 LINE L1 5599 6402 -24 841 150 0 0 chr6 58611891 58612024 -130667530 - FLAM_C SINE Alu 0 133 1 31 58 0 0 chr6 58612954 58613006 -130666548 + AT_rich Low_complexity Low_complexity 1 52 0 1966 164 0 3 chr6 58613211 58613523 -130666031 + AluSx SINE Alu 1 311 -1 736 240 54 5 chr6 58614428 58614649 -130664905 - MER106A DNA MER1_type -3 233 2 2376 103 0 0 chr6 58614656 58614968 -130664586 + AluSx SINE Alu 1 312 0 262 261 0 31 chr6 58615599 58615664 -130663890 + MIR3 SINE MIR 95 157 -51 2253 105 0 3 chr6 58615672 58615978 -130663576 - AluSx SINE Alu -7 305 1 2057 121 0 54 chr6 58616445 58616760 -130662794 - AluSg SINE Alu -12 298 1 2080 138 7 0 chr6 58616760 58617057 -130662497 - AluSx SINE Alu -12 300 2 429 246 54 15 chr6 58617253 58617383 -130662171 + LTR67 LTR ERVL 4 138 -419 864 206 42 39 chr6 58617398 58617708 -130661846 - MER69 DNA AcHobo 0 2526 2216 694 205 0 0 chr6 58617724 58617846 -130661708 - FLAM_C SINE Alu -19 124 3 8286 95 55 14 chr6 58617860 58619168 -130660386 - SVA Other Other 0 1386 26 303 28 0 0 chr6 58619182 58619218 -130660336 + (GGGAGA)n Simple_repeat Simple_repeat 1 36 0 416 203 62 0 chr6 58619226 58619354 -130660200 - MER69 DNA AcHobo -315 2211 2076 628 196 56 14 chr6 58619376 58619519 -130660035 - MER69 DNA AcHobo -1070 156 8 2483 112 28 8 chr6 58619520 58619877 -130659677 - THE1B LTR MaLR 0 364 1 796 291 42 42 chr6 58619894 58620299 -130659255 + LTR67 LTR ERVL 153 557 0 1657 184 3 7 chr6 58620629 58620922 -130658632 + AluJo SINE Alu 1 292 -20 319 332 88 55 chr6 58620963 58621414 -130658140 + L2 LINE L2 2573 3051 -221 221 320 137 27 chr6 58621655 58621874 -130657680 + MIR SINE MIR 20 262 0 487 314 204 12 chr6 58621875 58622292 -130657262 - L3 LINE CR1 -340 1237 741 1324 210 90 15 chr6 58622879 58623213 -130656341 + MLT1A1 LTR MaLR 5 363 -2 34 24 0 0 chr6 58623240 58623281 -130656273 + AT_rich Low_complexity Low_complexity 1 41 0 690 118 0 0 chr6 58623284 58623377 -130656177 - FLAM_C SINE Alu -21 122 30 381 294 98 38 chr6 58623398 58623663 -130655891 + L1MDa LINE L1 1784 2064 -4476 2311 91 3 0 chr6 58623873 58624158 -130655396 + AluSp SINE Alu 2 287 -26 2082 141 20 0 chr6 58624229 58624528 -130655026 + AluSx SINE Alu 1 305 -7 180 0 0 0 chr6 58624528 58624548 -130655006 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr6 58624693 58624714 -130654840 + AT_rich Low_complexity Low_complexity 1 21 0 231 317 0 0 chr6 58625678 58625738 -130653816 - MIR3 SINE MIR -8 200 141 2227 152 2 35 chr6 58625913 58626315 -130653239 + MLT1B LTR MaLR 1 389 -1 647 195 100 120 chr6 58626564 58626842 -130652712 + MER2 DNA MER2_type 1 272 -72 2294 125 0 0 chr6 58626842 58627155 -130652399 - AluSq SINE Alu 0 313 1 647 195 100 120 chr6 58627155 58627225 -130652329 + MER2 DNA MER2_type 272 342 -2 245 161 0 185 chr6 58627959 58628040 -130651514 + L2 LINE L2 3246 3311 -2 1998 155 0 3 chr6 58628550 58628847 -130650707 - AluJb SINE Alu -16 296 1 207 0 0 0 chr6 58628918 58628941 -130650613 + (T)n Simple_repeat Simple_repeat 1 23 0 2102 138 3 0 chr6 58629018 58629322 -130650232 - AluSx SINE Alu -7 305 1 920 165 0 47 chr6 58629930 58630100 -130649454 + AluJo SINE Alu 5 166 -146 244 253 44 22 chr6 58630898 58630989 -130648565 - MER5A DNA MER1_type 0 189 97 382 274 89 27 chr6 58631260 58631406 -130648148 + MIR SINE MIR 49 203 -59 862 160 0 0 chr6 58632023 58632154 -130647400 + FLAM_C SINE Alu 3 133 0 23 0 0 0 chr6 58632168 58632191 -130647363 + AT_rich Low_complexity Low_complexity 1 23 0 288 152 63 51 chr6 58632239 58632318 -130647236 + MER5A DNA MER1_type 27 106 -83 682 169 0 39 chr6 58632340 58632465 -130647089 + FLAM_C SINE Alu 1 121 -8 300 27 0 0 chr6 58632465 58632502 -130647052 + (TG)n Simple_repeat Simple_repeat 2 38 0 618 225 53 12 chr6 58634002 58634188 -130645366 - MIR SINE MIR -11 251 54 185 0 40 0 chr6 58635435 58635460 -130644094 + (TG)n Simple_repeat Simple_repeat 1 26 0 2196 96 3 3 chr6 58635585 58635905 -130643649 + AluSq SINE Alu 1 313 0 2381 86 0 13 chr6 58636359 58636663 -130642891 - AluY SINE Alu -11 300 1 200 233 0 0 chr6 58637301 58637344 -130642210 + T-rich Low_complexity Low_complexity 3 45 0 228 200 0 0 chr6 58637411 58637451 -130642103 + MLT1D LTR MaLR 250 289 -216 2189 115 0 29 chr6 58637698 58638011 -130641543 - AluSq SINE Alu -9 304 1 208 103 51 0 chr6 58638175 58638214 -130641340 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1787 193 10 0 chr6 58638577 58638882 -130640672 - AluJb SINE Alu -4 308 1 229 230 81 0 chr6 58639603 58639677 -130639877 + L1ME3A LINE L1 6086 6165 -5 806 279 86 65 chr6 58639883 58640238 -130639316 - LTR33A LTR ERVL 0 523 152 1574 203 115 38 chr6 58640238 58640707 -130638847 - MLT1D LTR MaLR 0 505 1 806 279 86 65 chr6 58640707 58640863 -130638691 - LTR33A LTR ERVL -371 152 1 309 270 131 36 chr6 58640876 58641216 -130638338 + L1ME LINE L1 5254 5635 -486 801 173 36 54 chr6 58641216 58641384 -130638170 - FRAM SINE Alu -1 165 1 210 231 0 19 chr6 58641461 58641513 -130638041 + CT-rich Low_complexity Low_complexity 1 51 0 512 317 80 5 chr6 58641570 58641794 -130637760 + MIR SINE MIR 22 262 0 2446 52 0 10 chr6 58642462 58642770 -130636784 + AluY SINE Alu 1 305 -6 15040 160 20 13 chr6 58643048 58645399 -130634155 + L1MA3 LINE L1 2816 5151 -1856 297 51 0 0 chr6 58645399 58645438 -130634116 + (CA)n Simple_repeat Simple_repeat 2 40 0 15040 160 20 13 chr6 58645438 58646318 -130633236 + L1MA3 LINE L1 5151 6024 -983 2373 101 0 0 chr6 58646318 58646616 -130632938 + AluSp SINE Alu 1 298 -15 15040 160 20 13 chr6 58646616 58647535 -130632019 + L1MA3 LINE L1 6024 7007 0 2393 98 0 0 chr6 58648107 58648403 -130631151 - AluSx SINE Alu -12 300 5 1749 137 0 65 chr6 58650265 58650571 -130628983 - AluJo SINE Alu -10 302 17 24 67 0 0 chr6 58650746 58650791 -130628763 + AT_rich Low_complexity Low_complexity 1 45 0 339 255 41 31 chr6 58651672 58651770 -130627784 - MIR SINE MIR -133 129 31 917 178 94 5 chr6 58655362 58655564 -130623990 + MIR SINE MIR 4 223 -39 204 67 0 0 chr6 58656228 58656258 -130623296 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2138 108 0 0 chr6 58656258 58656537 -130623017 - AluSx SINE Alu -33 279 1 33 25 0 0 chr6 58656638 58656678 -130622876 + AT_rich Low_complexity Low_complexity 1 40 0 1326 201 78 4 chr6 58656682 58656950 -130622604 - AluJo SINE Alu -24 288 1 2377 91 0 0 chr6 58657261 58657568 -130621986 - AluY SINE Alu -3 308 2 21 71 0 0 chr6 58657611 58657653 -130621901 + AT_rich Low_complexity Low_complexity 1 42 0 6078 135 81 16 chr6 58659754 58660910 -130618644 + Tigger3b DNA MER2_type 1 1231 0 2446 43 0 0 chr6 58662300 58662609 -130616945 + AluY SINE Alu 1 309 0 22 35 0 0 chr6 58662917 58662946 -130616608 + AT_rich Low_complexity Low_complexity 1 29 0 877 185 40 20 chr6 58663272 58663521 -130616033 - MER33 DNA MER1_type -31 293 40 1366 189 8 16 chr6 58663542 58663790 -130615764 + AluJo SINE Alu 47 292 -20 522 133 92 0 chr6 58663958 58664056 -130615498 + HY1 scRNA scRNA 1 107 -5 2430 64 10 26 chr6 58664056 58664367 -130615187 - AluSq SINE Alu -7 306 1 334 304 152 18 chr6 58664478 58664695 -130614859 - MIR SINE MIR -2 260 15 23 33 0 0 chr6 58664774 58664804 -130614750 + AT_rich Low_complexity Low_complexity 1 30 0 1629 187 3 35 chr6 58664859 58665175 -130614379 - AluJo SINE Alu -6 306 1 384 22 0 0 chr6 58666151 58666196 -130613358 + (TG)n Simple_repeat Simple_repeat 2 46 0 751 204 112 0 chr6 58667045 58667197 -130612357 - MLT1A1 LTR MaLR 0 365 197 1570 149 92 7 chr6 58667239 58667520 -130612034 - AluJo SINE Alu -7 305 1 3142 239 71 22 chr6 58667552 58669683 -130609871 - L1MCb LINE L1 -2806 3758 210 1141 241 86 47 chr6 58669683 58669767 -130609787 + MLT1C LTR MaLR 6 85 -382 1649 188 3 20 chr6 58669767 58670071 -130609483 + AluJb SINE Alu 1 299 -13 1141 241 86 47 chr6 58670071 58670429 -130609125 + MLT1C LTR MaLR 85 465 -2 513 243 55 44 chr6 58670429 58670663 -130608891 - L1MCa LINE L1 -5826 342 3 263 278 113 30 chr6 58671071 58671301 -130608253 - L1MCa LINE L1 -4741 1685 1437 361 287 64 59 chr6 58671503 58671705 -130607849 - HAL1 LINE L1 -6 2501 2299 240 221 12 23 chr6 58671873 58671959 -130607595 - HAL1b LINE L1 -518 830 746 624 136 41 23 chr6 58672082 58672302 -130607252 + CT-rich Low_complexity Low_complexity 1 224 0 1422 149 7 85 chr6 58672311 58672606 -130606948 - AluJb SINE Alu -38 274 3 295 292 221 0 chr6 58672754 58672908 -130606646 - HAL1 LINE L1 -590 1917 1730 515 292 185 24 chr6 58672958 58673536 -130606018 - HAL1 LINE L1 -731 1776 1106 261 225 125 0 chr6 58673754 58673834 -130605720 - L1MC4 LINE L1 -194 7848 7759 * 1907 236 81 18 chr6 58673828 58674188 -130605366 - L1MC4 LINE L1 -965 7077 6666 207 100 0 0 chr6 58674188 58674218 -130605336 + (TG)n Simple_repeat Simple_repeat 2 31 0 1907 236 81 18 chr6 58674218 58674425 -130605129 - L1MC4 LINE L1 -1376 6666 6474 238 225 14 99 chr6 58674544 58674615 -130604939 - HAL1 LINE L1 -1667 840 776 2050 83 53 0 chr6 58674626 58674917 -130604637 - AluSx SINE Alu 0 308 4 532 292 138 36 chr6 58675357 58675641 -130603913 - MLT1L LTR MaLR -2 613 359 2324 84 0 3 chr6 58675641 58675938 -130603616 - AluY SINE Alu -15 296 1 532 292 138 36 chr6 58675938 58675997 -130603557 - MLT1L LTR MaLR -256 359 307 840 129 0 23 chr6 58675997 58676129 -130603425 + FLAM_C SINE Alu 2 130 -3 532 292 138 36 chr6 58676129 58676175 -130603379 - MLT1L LTR MaLR -308 307 183 354 220 44 107 chr6 58676336 58676495 -130603059 - MLT1L LTR MaLR -461 154 6 1299 251 83 19 chr6 58676780 58677155 -130602399 - MLT1E LTR MaLR -7 586 188 982 181 170 47 chr6 58677191 58677385 -130602169 - AluJb SINE Alu -2 310 71 2215 107 0 0 chr6 58677385 58677683 -130601871 - AluSc SINE Alu -11 298 1 982 181 170 47 chr6 58677683 58677764 -130601790 - AluJb SINE Alu -241 71 1 768 187 0 0 chr6 58677766 58677889 -130601665 - MLT1E LTR MaLR -470 123 1 238 271 102 54 chr6 58678636 58678802 -130600752 - MIR SINE MIR -50 212 39 220 333 23 61 chr6 58679131 58679263 -130600291 + L2 LINE L2 3145 3271 -1 1049 155 0 6 chr6 58679324 58679498 -130600056 + MER2 DNA MER2_type 33 205 -140 13831 130 29 39 chr6 58679565 58679915 -130599639 - Tigger1 DNA MER2_type 0 2418 2066 6678 67 15 24 chr6 58679915 58681492 -130598062 - SVA Other Other -723 1386 57 551 14 28 0 chr6 58681492 58681563 -130597991 + (GGGAGA)n Simple_repeat Simple_repeat 1 73 0 13831 130 29 39 chr6 58681563 58682185 -130597369 - Tigger1 DNA MER2_type -351 2067 1440 1520 107 22 85 chr6 58682185 58682456 -130597098 - AluSg SINE Alu -56 254 1 13831 130 29 39 chr6 58682456 58683246 -130596308 - Tigger1 DNA MER2_type -978 1440 682 2269 101 3 0 chr6 58683246 58683543 -130596011 - AluSx SINE Alu -1 311 14 13831 130 29 39 chr6 58683543 58684219 -130595335 - Tigger1 DNA MER2_type -1736 682 1 313 283 67 83 chr6 58684383 58684503 -130595051 + MIR SINE MIR 26 143 -119 3911 212 83 48 chr6 58684853 58685504 -130594050 + L1MC3 LINE L1 6524 7151 -634 2532 71 0 7 chr6 58685504 58685812 -130593742 + AluSc SINE Alu 1 306 -3 3911 212 83 48 chr6 58685812 58686379 -130593175 + L1MC3 LINE L1 7151 7785 0 1339 102 0 110 chr6 58686541 58686591 -130592963 + AluY SINE Alu 84 138 -173 2402 49 10 0 chr6 58686591 58686879 -130592675 + AluY SINE Alu 1 291 -20 1339 102 0 110 chr6 58686879 58687073 -130592481 + AluY SINE Alu 138 301 -10 309 284 190 30 chr6 58688330 58688562 -130590992 - L1ME LINE L1 -352 5818 5550 229 250 71 24 chr6 58688613 58688697 -130590857 - L1M2 LINE L1 -844 5468 5381 2304 94 0 0 chr6 58689481 58689779 -130589775 + AluSx SINE Alu 1 298 -14 377 328 97 15 chr6 58691029 58691224 -130588330 - MLT1I LTR MaLR -198 211 1 2418 154 30 20 chr6 58691662 58691993 -130587561 + MSTB LTR MaLR 18 355 -71 1776 156 3 26 chr6 58691993 58692301 -130587253 - AluJb SINE Alu -11 301 1 2418 154 30 20 chr6 58692301 58692372 -130587182 + MSTB LTR MaLR 355 424 -2 308 231 60 75 chr6 58692481 58692615 -130586939 + MIR SINE MIR 82 213 -49 354 198 24 79 chr6 58692637 58692763 -130586791 - MER112 DNA MER1_type -55 205 87 1156 211 220 62 chr6 58692922 58693490 -130586064 - L1ME1 LINE L1 -7 6159 5502 434 269 45 60 chr6 58693718 58693919 -130585635 - L2 LINE L2 0 3313 3116 233 284 45 84 chr6 58694465 58694620 -130584934 - L2 LINE L2 -6 3307 3159 197 317 0 17 chr6 58695036 58695096 -130584458 - MIR SINE MIR -62 146 88 1953 211 62 127 chr6 58695135 58695860 -130583694 - L1MDa LINE L1 -5846 694 17 2296 89 0 0 chr6 58695981 58696273 -130583281 + AluSx SINE Alu 1 292 -20 2296 84 3 0 chr6 58696460 58696746 -130582808 + AluSp SINE Alu 16 302 -11 24 77 0 0 chr6 58697450 58697502 -130582052 + AT_rich Low_complexity Low_complexity 1 52 0 33 66 0 0 chr6 58697526 58697587 -130581967 + AT_rich Low_complexity Low_complexity 1 61 0 525 124 31 10 chr6 58698038 58698135 -130581419 + L1MA9 LINE L1 6184 6282 -30 234 286 0 16 chr6 58698143 58698206 -130581348 + MLT1I LTR MaLR 280 341 -68 23 54 0 0 chr6 58699765 58699802 -130579752 + AT_rich Low_complexity Low_complexity 1 37 0 1935 148 0 0 chr6 58702903 58703186 -130576368 - AluSx SINE Alu -29 283 1 263 253 182 10 chr6 58703295 58703394 -130576160 - L2 LINE L2 -9 3304 3189 450 233 22 15 chr6 58703521 58703699 -130575855 - L1ME1 LINE L1 -807 5339 5167 3241 155 52 5 chr6 58703948 58704522 -130575032 + MER6A DNA MER2_type 5 605 0 303 395 12 32 chr6 58704567 58704820 -130574734 + L2 LINE L2 2812 3059 -213 353 256 0 32 chr6 58704901 58704916 -130574638 - L1MA10 LINE L1 -1 6333 6319 965 236 136 35 chr6 58704916 58705322 -130574232 - L1ME1 LINE L1 -5 6161 5715 326 292 88 22 chr6 58705335 58705472 -130574082 + L2 LINE L2 3159 3304 -9 597 151 0 28 chr6 58705704 58705810 -130573744 + FLAM_C SINE Alu 26 128 -15 1054 194 93 8 chr6 58705893 58706140 -130573414 - MER119 DNA MER1_type 0 583 316 229 137 20 0 chr6 58706140 58706191 -130573363 - LTR61 LTR ERV1 0 595 544 191 130 0 22 chr6 58706887 58706933 -130572621 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 305 400 0 8 chr6 58708471 58708591 -130570963 - L2 LINE L2 0 3272 3154 271 93 47 0 chr6 58708594 58708637 -130570917 + Alu SINE Alu 253 297 -5 505 342 46 25 chr6 58711324 58711564 -130567990 - MIR SINE MIR -15 247 3 423 288 12 82 chr6 58712035 58712205 -130567349 + MIR3 SINE MIR 44 201 -7 486 263 154 6 chr6 58713360 58713516 -130566038 + MER5A DNA MER1_type 4 182 -7 1755 175 10 3 chr6 58714275 58714572 -130564982 + AluJb SINE Alu 2 300 -12 526 325 53 60 chr6 58714877 58715160 -130564394 - L2 LINE L2 -3 3269 2989 288 0 0 0 chr6 58715320 58715352 -130564202 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1968 99 4 4 chr6 58715356 58715628 -130563926 - AluSc SINE Alu -37 272 1 229 202 273 30 chr6 58715738 58715837 -130563717 + MER5A DNA MER1_type 43 165 -24 * 460 210 40 0 chr6 58715764 58715864 -130563690 - MER5A DNA MER1_type -77 112 9 222 309 0 0 chr6 58715873 58715928 -130563626 + MIR SINE MIR 201 255 -7 645 128 183 49 chr6 58716876 58717040 -130562514 - MER53 DNA DNA -3 186 1 261 75 0 0 chr6 58717146 58717186 -130562368 + (T)n Simple_repeat Simple_repeat 1 40 0 550 294 12 6 chr6 58718006 58718176 -130561378 + MER5B DNA MER1_type 4 174 -4 742 191 145 0 chr6 58718178 58718330 -130561224 - MER5A DNA MER1_type -15 174 1 22 0 0 0 chr6 58718533 58718555 -130560999 + AT_rich Low_complexity Low_complexity 1 22 0 3117 151 29 44 chr6 58719073 58719625 -130559929 - L1MB1 LINE L1 -280 5888 5329 1682 123 116 8 chr6 58719625 58719923 -130559631 - AluSg SINE Alu 0 310 2 3117 151 29 44 chr6 58719923 58720029 -130559525 - L1MB1 LINE L1 -839 5329 5239 2131 115 29 50 chr6 58720029 58720412 -130559142 - THE1C LTR MaLR 0 375 1 3117 151 29 44 chr6 58720412 58720491 -130559063 - L1MB1 LINE L1 -929 5239 5160 968 265 46 15 chr6 58720601 58721058 -130558496 - L1M4 LINE L1 -2717 3429 2959 483 331 14 7 chr6 58721463 58721611 -130557943 + MER5B DNA MER1_type 29 177 -1 312 384 75 0 chr6 58723557 58723690 -130555864 - L2 LINE L2 -4 3268 3126 471 207 96 22 chr6 58725005 58725140 -130554414 - MIR SINE MIR -37 225 81 1244 138 37 32 chr6 58726334 58726552 -130553002 - MER20 DNA MER1_type 0 219 1 183 241 63 38 chr6 58726608 58726687 -130552867 - L3b LINE CR1 -194 1389 1309 180 0 0 0 chr6 58727612 58727632 -130551922 + (T)n Simple_repeat Simple_repeat 1 20 0 1715 194 22 11 chr6 58727722 58728083 -130551471 - MLT1A1 LTR MaLR 0 365 1 266 364 45 15 chr6 58729737 58729869 -130549685 - L2 LINE L2 0 3272 3137 540 307 88 14 chr6 58729884 58730099 -130549455 + MIR SINE MIR 31 261 -1 424 257 0 20 chr6 58730994 58731095 -130548459 - MER58A DNA MER1_type -6 101 3 362 290 231 12 chr6 58734834 58735003 -130544551 + MIR SINE MIR 44 249 -13 208 339 0 0 chr6 58735523 58735579 -130543975 - MIR3 SINE MIR 0 208 153 629 231 154 0 chr6 58735588 58735744 -130543810 + MER5A DNA MER1_type 10 189 0 293 308 79 75 chr6 58735751 58736017 -130543537 - L3 LINE CR1 -854 723 457 228 336 32 16 chr6 58736035 58736160 -130543394 - L1ME3A LINE L1 -15 6155 6029 877 301 48 15 chr6 58736310 58736706 -130542848 - L1ME3A LINE L1 -222 5948 5540 1881 106 12 81 chr6 58736969 58737291 -130542263 - AluSx SINE Alu -12 300 1 1987 150 36 6 chr6 58738236 58738595 -130540959 - Tigger7 DNA MER2_type 0 2487 2118 3601 186 65 6 chr6 58738595 58739322 -130540232 - Tigger7 DNA MER2_type -1717 770 1 598 220 9 142 chr6 58739583 58739611 -130539943 - MER5A DNA MER1_type 0 189 159 2105 191 8 46 chr6 58739611 58740115 -130539439 - MER31A LTR ERV1 0 485 1 598 220 9 142 chr6 58740115 58740304 -130539250 - MER5A DNA MER1_type -30 159 1 339 85 0 0 chr6 58743189 58743236 -130536318 + (CA)n Simple_repeat Simple_repeat 2 48 0 2076 178 46 33 chr6 58744137 58744616 -130534938 - MER31A LTR ERV1 0 485 1 8573 189 110 110 chr6 58744616 58747408 -130532146 - MER31A-int LTR ERV1 -19 4917 2121 1843 174 6 3 chr6 58747408 58747719 -130531835 + AluSx SINE Alu 1 312 0 8573 189 110 110 chr6 58747719 58748210 -130531344 - MER31A-int LTR ERV1 -2814 2122 1632 5219 205 40 43 chr6 58748221 58749506 -130530048 - MER31-int LTR ERV1 -3483 1453 173 391 312 88 10 chr6 58751476 58751681 -130527873 - MIR SINE MIR -2 260 40 405 260 31 8 chr6 58753384 58753511 -130526043 + GA-rich Low_complexity Low_complexity 1 130 0 251 221 243 29 chr6 58754757 58754893 -130524661 - L1ME4a LINE L1 -69 6052 5888 542 65 39 0 chr6 58755104 58755181 -130524373 - MADE1 DNA Mariner 0 80 1 353 272 28 176 chr6 58755673 58755901 -130523653 + L2 LINE L2 2927 3086 -186 2328 88 0 0 chr6 58755901 58756196 -130523358 - AluY SINE Alu -16 295 1 353 272 28 176 chr6 58756196 58756320 -130523234 + L2 LINE L2 3086 3227 -45 310 253 143 0 chr6 58756324 58756415 -130523139 + L2 LINE L2 3168 3271 -1 336 408 5 5 chr6 58757306 58757490 -130522064 - MIR3 SINE MIR -8 200 17 446 288 152 11 chr6 58757612 58757803 -130521751 - MIR SINE MIR -40 222 5 21 57 0 0 chr6 58757812 58757847 -130521707 + AT_rich Low_complexity Low_complexity 1 35 0 243 328 35 47 chr6 58757862 58758033 -130521521 + MIR SINE MIR 29 197 -65 484 298 82 39 chr6 58759171 58759450 -130520104 + L2 LINE L2 2606 2896 -418 731 328 87 30 chr6 58759772 58760420 -130519134 - L2 LINE L2 0 3313 2626 282 343 137 20 chr6 58760768 58760914 -130518640 + MIR3 SINE MIR 21 183 -25 21 0 0 0 chr6 58761550 58761571 -130517983 + AT_rich Low_complexity Low_complexity 1 21 0 13501 89 32 5 chr6 58762393 58765055 -130514499 + L1PA7 LINE L1 3473 6154 0 258 32 0 0 chr6 58767683 58767714 -130511840 + (TG)n Simple_repeat Simple_repeat 1 31 0 2077 136 0 13 chr6 58768385 58768694 -130510860 - AluSx SINE Alu -7 305 1 220 350 109 7 chr6 58768696 58768833 -130510721 + MIR SINE MIR 104 254 -8 346 324 9 0 chr6 58769717 58769822 -130509732 + MIR3 SINE MIR 49 154 -54 2311 98 3 0 chr6 58770719 58771015 -130508539 - AluSx SINE Alu -15 297 1 3365 314 142 23 chr6 58771451 58772870 -130506684 - L2 LINE L2 -1 3312 2063 234 0 0 0 chr6 58772870 58772896 -130506658 + (TTA)n Simple_repeat Simple_repeat 3 28 0 8754 45 3 3 chr6 58772896 58774747 -130504807 - L1PA4 LINE L1 -18 6137 4286 3365 314 142 23 chr6 58774747 58775366 -130504188 - L2 LINE L2 -1249 2064 1009 364 284 75 92 chr6 58775366 58775658 -130503896 - MLT1I LTR MaLR -7 402 116 501 176 117 1 chr6 58775901 58776018 -130503536 - MLT1G LTR MaLR -2 588 412 182 311 126 15 chr6 58776371 58776506 -130503048 + MIR3 SINE MIR 31 180 -28 213 179 0 89 chr6 58778649 58778705 -130500849 + L2 LINE L2 3261 3311 -2 1846 118 0 38 chr6 58779177 58779465 -130500089 - AluSx SINE Alu -35 277 1 528 82 82 0 chr6 58779579 58779664 -130499890 + L1PA13 LINE L1 6065 6156 -7 24 32 0 0 chr6 58780524 58780555 -130498999 + AT_rich Low_complexity Low_complexity 1 31 0 252 264 88 74 chr6 58781157 58781305 -130498249 + L2 LINE L2 3164 3313 0 865 297 95 52 chr6 58781376 58781837 -130497717 + LTR33 LTR ERVL 3 483 -38 263 321 28 0 chr6 58782600 58782706 -130496848 - L3 LINE CR1 -584 993 885 235 316 13 0 chr6 58783153 58783229 -130496325 - L1ME3A LINE L1 -106 6064 5988 409 291 95 47 chr6 58783347 58784301 -130495253 - L1MEc LINE L1 -3662 2553 1597 455 255 84 82 chr6 58784349 58784729 -130494825 - L1MEc LINE L1 -4923 1473 1093 21 0 0 0 chr6 58784888 58784909 -130494645 + AT_rich Low_complexity Low_complexity 1 21 0 2383 117 8 3 chr6 58784920 58785272 -130494282 - THE1A LTR MaLR -1 354 1 10812 107 28 0 chr6 58785272 58786809 -130492745 - THE1A-int LTR MaLR 0 1580 1 2146 123 20 8 chr6 58786809 58787160 -130492394 - THE1A LTR MaLR 0 355 1 2023 138 3 3 chr6 58787574 58787871 -130491683 + AluSx SINE Alu 1 297 -15 1286 65 5 33 chr6 58788235 58788419 -130491135 - L1PA4 LINE L1 -4 6151 5973 456 319 128 4 chr6 58789277 58789503 -130490051 - MIR SINE MIR 0 262 9 21 57 0 0 chr6 58789648 58789683 -130489871 + AT_rich Low_complexity Low_complexity 1 35 0 31 58 0 0 chr6 58790879 58790931 -130488623 + AT_rich Low_complexity Low_complexity 1 52 0 2000 152 24 21 chr6 58791088 58791462 -130488092 + THE1C LTR MaLR 1 375 0 335 215 76 0 chr6 58792785 58792864 -130486690 - L2 LINE L2 -5 3308 3224 2575 43 3 0 chr6 58792864 58793169 -130486385 + AluY SINE Alu 1 306 -5 347 259 147 29 chr6 58794362 58794532 -130485022 + HAL1b LINE L1 16 205 -1143 699 236 159 35 chr6 58794539 58794941 -130484613 + HAL1b LINE L1 515 966 -382 935 226 26 52 chr6 58796309 58796615 -130482939 - L1ME2 LINE L1 -9 6155 5858 241 254 119 0 chr6 58796798 58796857 -130482697 + MER113 DNA MER1_type? 453 518 -3 519 309 55 10 chr6 58796871 58797072 -130482482 + MIR SINE MIR 53 262 0 529 246 115 15 chr6 58797107 58797297 -130482257 - MIR SINE MIR -43 219 19 345 288 10 35 chr6 58797458 58797572 -130481982 + GA-rich Low_complexity Low_complexity 3 193 0 23 0 0 0 chr6 58797925 58797948 -130481606 + AT_rich Low_complexity Low_complexity 1 23 0 1627 254 127 21 chr6 58797948 58798476 -130481078 - MLT1E LTR MaLR 0 593 10 213 261 0 0 chr6 58798495 58798541 -130481013 + MIR SINE MIR 100 145 -117 461 305 91 29 chr6 58798569 58798910 -130480644 - L1ME2 LINE L1 -442 5679 5318 2002 120 0 7 chr6 58798952 58799278 -130480276 - AluSg SINE Alu 0 324 1 230 357 61 10 chr6 58799845 58799943 -130479611 + L2 LINE L2 3154 3256 -16 519 215 0 19 chr6 58800130 58800237 -130479317 + L1PA8A LINE L1 6014 6118 -13 23 33 0 0 chr6 58800237 58800267 -130479287 + AT_rich Low_complexity Low_complexity 1 30 0 329 375 143 5 chr6 58800402 58800618 -130478936 - L2 LINE L2 0 3272 3027 207 0 0 0 chr6 58800632 58800655 -130478899 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 215 321 60 12 chr6 58800655 58800729 -130478825 + L2 LINE L2 3192 3272 0 1153 164 43 19 chr6 58800979 58801187 -130478367 + MER20 DNA MER1_type 7 219 0 717 252 137 51 chr6 58802779 58803383 -130476171 - HAL1b LINE L1 -4 1344 689 1550 269 171 17 chr6 58803413 58804275 -130475279 - HAL1 LINE L1 -185 2322 1329 667 249 85 42 chr6 58804289 58804667 -130474887 - HAL1 LINE L1 -1394 1113 720 272 317 82 60 chr6 58804686 58804869 -130474685 + MER5A DNA MER1_type 1 187 -2 * 707 247 69 6 chr6 58804709 58804883 -130474671 - MER5A DNA MER1_type -3 186 2 332 336 81 28 chr6 58804886 58805097 -130474457 - HAL1 LINE L1 -1841 666 445 541 277 79 62 chr6 58805108 58805462 -130474092 - HAL1 LINE L1 -2129 378 19 21 0 0 0 chr6 58806952 58806973 -130472581 + AT_rich Low_complexity Low_complexity 1 21 0 14070 137 28 18 chr6 58807085 58809480 -130470074 + Tigger1 DNA MER2_type 1 2418 0 2068 79 46 4 chr6 58809688 58810004 -130469550 - AluY SINE Alu 0 311 1 346 260 30 95 chr6 58811113 58811282 -130468272 + MLT1I LTR MaLR 58 215 -194 1436 148 4 22 chr6 58811327 58811597 -130467957 - L1MB1 LINE L1 -7 6161 5897 4200 260 107 20 chr6 58811913 58813645 -130465909 - L1MEc LINE L1 -4427 1969 87 362 167 0 83 chr6 58813678 58813762 -130465792 - L1MEc LINE L1 -6284 112 36 2320 98 0 13 chr6 58814104 58814419 -130465135 + AluY SINE Alu 1 311 0 208 0 62 0 chr6 58814726 58814758 -130464796 + (TA)n Simple_repeat Simple_repeat 1 34 0 25 0 0 0 chr6 58814794 58814819 -130464735 + AT_rich Low_complexity Low_complexity 1 25 0 2229 108 0 3 chr6 58814826 58815122 -130464432 - AluSx SINE Alu -13 299 5 632 273 132 0 chr6 58815246 58815275 -130464279 + MIR SINE MIR 6 30 -232 2455 85 0 0 chr6 58815275 58815582 -130463972 + AluY SINE Alu 1 307 -4 632 273 132 0 chr6 58815582 58815779 -130463775 + MIR SINE MIR 30 262 0 23 68 0 0 chr6 58816034 58816078 -130463476 + AT_rich Low_complexity Low_complexity 1 44 0 392 332 60 8 chr6 58816200 58816435 -130463119 + MER112 DNA MER1_type 1 247 -13 1016 121 7 0 chr6 58816924 58817064 -130462490 - AluSq/x SINE Alu -165 147 7 180 77 0 0 chr6 58818047 58818073 -130461481 + (CAT)n Simple_repeat Simple_repeat 3 28 0 192 152 0 0 chr6 58818156 58818189 -130461365 + (TATG)n Simple_repeat Simple_repeat 2 34 0 205 193 11 57 chr6 58818195 58818272 -130461282 + (TATATG)n Simple_repeat Simple_repeat 1 75 -9 1804 210 3 6 chr6 58818272 58818620 -130460934 - MER7A DNA MER2_type -1 345 1 205 193 11 57 chr6 58818620 58818630 -130460924 + (TATATG)n Simple_repeat Simple_repeat 75 84 0 213 310 155 28 chr6 58818670 58818812 -130460742 - L2 LINE L2 -5 3267 3108 230 271 47 56 chr6 58819833 58819940 -130459614 + LTR33 LTR ERVL 331 436 -85 1404 300 168 17 chr6 58820109 58820919 -130458635 + L2 LINE L2 1826 2757 -557 2716 46 0 0 chr6 58820933 58821261 -130458293 + L1PA4 LINE L1 5825 6152 -3 26 30 0 0 chr6 58821559 58821592 -130457962 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr6 58821725 58821746 -130457808 + AT_rich Low_complexity Low_complexity 1 21 0 244 268 13 38 chr6 58821822 58821979 -130457575 + L1ME3A LINE L1 5810 5962 -208 201 191 85 0 chr6 58822490 58822537 -130457017 - L3 LINE CR1 -715 862 812 520 348 13 0 chr6 58822603 58822758 -130456796 + L2 LINE L2 3116 3272 0 211 231 0 103 chr6 58823358 58823436 -130456118 - MIR3 SINE MIR -2 206 137 723 237 59 0 chr6 58823708 58823894 -130455660 - MER58A DNA MER1_type 0 224 28 237 250 73 0 chr6 58824058 58824126 -130455428 + L2 LINE L2 3200 3272 0 684 327 11 15 chr6 58825153 58825413 -130454141 - MARNA DNA Mariner -67 519 261 22 0 0 0 chr6 58825636 58825658 -130453896 + AT_rich Low_complexity Low_complexity 1 22 0 639 268 74 11 chr6 58825685 58825875 -130453679 - MIR SINE MIR -31 231 30 283 308 19 19 chr6 58826250 58826357 -130453197 - MLT2E LTR ERVL -486 142 36 21 0 0 0 chr6 58827057 58827078 -130452476 + AT_rich Low_complexity Low_complexity 1 21 0 442 282 113 5 chr6 58827702 58827897 -130451657 - MIR SINE MIR -15 247 32 397 305 0 58 chr6 58827939 58828129 -130451425 + L2 LINE L2 537 715 -2599 * 553 269 150 0 chr6 58828120 58828280 -130451274 + MER5A DNA MER1_type 6 189 0 4630 267 193 17 chr6 58828326 58829307 -130450247 + L2 LINE L2 707 1514 -1799 2196 118 0 0 chr6 58829307 58829611 -130449943 - AluSx SINE Alu -8 304 1 4630 267 193 17 chr6 58829611 58830820 -130448734 + L2 LINE L2 1514 3294 -19 355 253 11 21 chr6 58831129 58831224 -130448330 + MER94 DNA DNA 7 100 -34 746 285 65 29 chr6 58831231 58831582 -130447972 + L2 LINE L2 2492 2855 -459 547 294 61 54 chr6 58831555 58831851 -130447703 + L2 LINE L2 3016 3313 0 * 1691 124 98 9 chr6 58833105 58833420 -130446134 - MER61A LTR ERV1 0 343 1 250 296 167 53 chr6 58835725 58835857 -130443697 - L2 LINE L2 0 3272 3126 880 146 0 0 chr6 58836659 58836782 -130442772 + FLAM_C SINE Alu 5 127 -16 180 77 0 0 chr6 58836793 58836819 -130442735 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 318 244 194 56 chr6 58837708 58837868 -130441686 - MIR SINE MIR -33 229 48 633 164 18 0 chr6 58838024 58838134 -130441420 - MER5A DNA MER1_type -77 112 1 526 256 33 0 chr6 58839223 58839344 -130440210 - L2 LINE L2 -10 3303 3179 333 186 35 26 chr6 58839364 58839477 -130440077 + (CATATA)n Simple_repeat Simple_repeat 1 114 0 261 179 36 0 chr6 58839534 58839618 -130439936 + (TA)n Simple_repeat Simple_repeat 2 88 0 344 252 109 34 chr6 58839628 58839775 -130439779 - L2 LINE L2 -157 3156 2999 514 280 84 0 chr6 58839930 58840144 -130439410 - MIR SINE MIR -15 247 16 574 311 19 6 chr6 58841881 58842042 -130437512 + MER91A DNA MER1_type 5 167 -29 228 347 82 0 chr6 58842047 58842145 -130437409 + MER91A DNA MER1_type 91 196 0 1098 287 79 57 chr6 58842375 58842428 -130437126 - MLT1J LTR MaLR -3 508 458 1686 141 63 4 chr6 58842428 58842588 -130436966 - AluJo SINE Alu -17 295 111 345 47 0 0 chr6 58842588 58842631 -130436923 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 1686 141 63 4 chr6 58842631 58842739 -130436815 - AluJo SINE Alu -201 111 11 1098 287 79 57 chr6 58842739 58843176 -130436378 - MLT1J LTR MaLR -53 458 7 209 33 33 0 chr6 58843505 58843535 -130436019 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 549 298 56 81 chr6 58844000 58844430 -130435124 + L2 LINE L2 2206 2624 -690 694 263 125 2 chr6 58844434 58844777 -130434777 - MLT1J2 LTR MaLR 0 450 16 690 310 71 41 chr6 58844813 58845375 -130434179 + L2 LINE L2 2687 3313 0 1003 252 95 72 chr6 58845421 58845882 -130433672 - MLT1J LTR MaLR -39 472 1 193 156 0 0 chr6 58847261 58847293 -130432261 + MIR SINE MIR 86 117 -145 32 26 0 0 chr6 58847380 58847419 -130432135 + AT_rich Low_complexity Low_complexity 1 39 0 282 95 0 0 chr6 58847895 58847937 -130431617 + (TG)n Simple_repeat Simple_repeat 2 43 0 260 161 3 0 chr6 58849733 58849785 -130429769 - MLT2C2 LTR ERVL 0 464 345 787 61 18 0 chr6 58849786 58849900 -130429654 + (TAGA)n Simple_repeat Simple_repeat 4 119 0 46 19 0 0 chr6 58849904 58849957 -130429597 + AT_rich Low_complexity Low_complexity 1 53 0 1220 222 251 26 chr6 58849967 58850346 -130429208 - MLT2B1 LTR ERVL -56 464 1 284 325 61 18 chr6 58850669 58850783 -130428771 + MER5A DNA MER1_type 35 153 -36 712 192 14 20 chr6 58851331 58851477 -130428077 - MIR SINE MIR -71 191 47 1632 277 30 37 chr6 58852468 58853034 -130426520 + L2 LINE L2 1918 2479 -835 530 300 131 33 chr6 58853142 58853502 -130426052 - LTR33A LTR ERVL -128 395 1 390 314 16 8 chr6 58853585 58853706 -130425848 + L2 LINE L2 3179 3300 -13 247 250 0 0 chr6 58854739 58854791 -130424763 + GA-rich Low_complexity Low_complexity 4 55 0 1142 176 59 31 chr6 58854838 58855060 -130424494 + AluJb SINE Alu 3 230 -82 34 24 0 0 chr6 58855072 58855113 -130424441 + AT_rich Low_complexity Low_complexity 1 41 0 529 222 74 37 chr6 58856306 58856495 -130423059 - L1MDb LINE L1 -5465 1078 883 1511 266 37 59 chr6 58856702 58857243 -130422311 - L1MDb LINE L1 -6007 533 5 478 262 80 53 chr6 58859184 58859409 -130420145 + L2 LINE L2 2575 2805 -509 378 0 0 0 chr6 58859492 58859534 -130420020 + (TG)n Simple_repeat Simple_repeat 1 42 0 1250 185 9 0 chr6 58860038 58860260 -130419294 - MER58A DNA MER1_type 0 224 1 1678 254 50 34 chr6 58860294 58860949 -130418605 + L2 LINE L2 2597 3308 -5 208 146 21 0 chr6 58860951 58860963 -130418591 + (TGAA)n Simple_repeat Simple_repeat 3 13 -38 1860 174 7 0 chr6 58860963 58861262 -130418292 + AluJb SINE Alu 1 301 -11 208 146 21 0 chr6 58861262 58861297 -130418257 + (TGAA)n Simple_repeat Simple_repeat 13 51 0 211 240 0 40 chr6 58862686 58862736 -130416818 + polypurine Low_complexity Low_complexity 1 48 0 276 130 0 0 chr6 58862785 58862831 -130416723 + (CAT)n Simple_repeat Simple_repeat 2 47 0 1473 225 19 50 chr6 58863186 58863387 -130416167 + L1MB8 LINE L1 3608 3814 -2332 2792 31 0 0 chr6 58863387 58863705 -130415849 - AluYb8 SINE Alu 0 318 1 1473 225 19 50 chr6 58863705 58863965 -130415589 + L1MB8 LINE L1 3814 4055 -2091 4170 169 41 18 chr6 58863978 58864964 -130414590 + L1MB8 LINE L1 5171 6177 -1 187 160 60 0 chr6 58865721 58865771 -130413783 + CT-rich Low_complexity Low_complexity 4 56 0 2369 88 7 0 chr6 58866334 58866641 -130412913 + AluY SINE Alu 1 309 -2 246 213 188 25 chr6 58867557 58867637 -130411917 - L2 LINE L2 -12 3260 3168 248 283 121 0 chr6 58868554 58868653 -130410901 - L2 LINE L2 -8 3305 3195 341 325 138 0 chr6 58868689 58868877 -130410677 + L3 LINE CR1 1173 1386 -191 180 292 0 21 chr6 58868968 58869016 -130410538 + L2 LINE L2 3257 3303 -10 2170 121 0 10 chr6 58869423 58869728 -130409826 - AluSx SINE Alu -10 302 1 454 356 96 4 chr6 58869968 58870207 -130409347 - MIR SINE MIR 0 262 2 504 302 93 33 chr6 58870840 58871055 -130408499 - MIR SINE MIR 0 262 35 2319 93 0 0 chr6 58871271 58871562 -130407992 + AluSc SINE Alu 3 293 -16 1925 251 61 34 chr6 58872742 58873331 -130406223 - MER90 LTR ERV1 -9 605 1 2009 135 0 44 chr6 58873334 58873652 -130405902 - AluSx SINE Alu -8 304 1 590 319 86 9 chr6 58873995 58874227 -130405327 - MIR SINE MIR -12 250 1 26 0 0 0 chr6 58874346 58874372 -130405182 + AT_rich Low_complexity Low_complexity 1 26 0 252 284 0 26 chr6 58874399 58874554 -130405000 + (CATATA)n Simple_repeat Simple_repeat 2 152 0 3593 32 0 0 chr6 58874594 58875026 -130404528 - L1PA3 LINE L1 -876 5270 4839 7814 13 5 0 chr6 58875026 58875918 -130403636 + L1PA3 LINE L1 5255 6152 -3 2299 77 0 0 chr6 58876212 58876499 -130403055 - AluY SINE Alu -21 290 4 64 75 0 0 chr6 58877246 58877380 -130402174 + AT_rich Low_complexity Low_complexity 1 134 0 2007 139 3 0 chr6 58878467 58878762 -130400792 + AluSx SINE Alu 8 303 -9 24 0 0 0 chr6 58879031 58879055 -130400499 + AT_rich Low_complexity Low_complexity 1 24 0 280 183 17 0 chr6 58880443 58880503 -130399051 - MER4-int LTR ERV1 -5433 1165 1105 267 247 110 27 chr6 58880506 58880652 -130398902 + L1ME4a LINE L1 5959 6116 -5 1071 187 48 0 chr6 58880713 58880922 -130398632 + MER20 DNA MER1_type 1 219 0 211 296 51 51 chr6 58881368 58881466 -130398088 + L2 LINE L2 3174 3271 -1 283 211 14 14 chr6 58883153 58883224 -130396330 - MLT1J LTR MaLR -332 179 109 184 310 35 0 chr6 58883773 58883831 -130395723 + L2 LINE L2 3248 3307 -6 27 29 0 0 chr6 58884601 58884635 -130394919 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr6 58891850 58891880 -130387674 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr6 58894477 58894506 -130385048 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr6 58895701 58895731 -130383823 + AT_rich Low_complexity Low_complexity 1 30 0 591 301 6 0 chr6 58898143 58898319 -130381235 + MER5B DNA MER1_type 2 178 0 21 0 0 0 chr6 58898771 58898792 -130380762 + AT_rich Low_complexity Low_complexity 1 21 0 287 305 43 50 chr6 58898801 58898942 -130380612 - L2 LINE L2 -610 2704 2565 207 217 43 0 chr6 58900106 58900152 -130379402 - L2 LINE L2 -2 3270 3223 189 171 0 0 chr6 58900237 58900272 -130379282 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 1083 193 0 6 chr6 58900301 58900482 -130379072 - MER5A DNA MER1_type 0 189 10 788 141 39 6 chr6 58900931 58901087 -130378467 - MER53 DNA DNA -28 161 1 558 254 29 0 chr6 58901200 58901338 -130378216 + MER69 DNA AcHobo 6 147 -2379 429 195 0 0 chr6 58901335 58901412 -130378142 + MER69 DNA AcHobo 2450 2526 0 * 249 268 0 61 chr6 58902694 58902776 -130376778 - L2 LINE L2 0 3313 3237 23 0 0 0 chr6 58903249 58903272 -130376282 + AT_rich Low_complexity Low_complexity 1 23 0 820 281 168 32 chr6 58904620 58905026 -130374528 + L2 LINE L2 2852 3312 -1 186 43 0 0 chr6 58908849 58908872 -130370682 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 599 316 6 72 chr6 58909312 58909644 -130369910 + L3 LINE CR1 1033 1342 -235 188 316 18 0 chr6 58911007 58911064 -130368490 + MIR3 SINE MIR 129 186 -22 986 307 126 41 chr6 58911221 58911713 -130367841 - L3 LINE CR1 -104 1473 940 251 305 24 12 chr6 58912429 58912511 -130367043 + MIR SINE MIR 58 140 -122 914 112 0 0 chr6 58914075 58914209 -130365345 - L1PB1 LINE L1 -2 6149 6016 220 268 56 113 chr6 58914667 58914726 -130364828 + MIR SINE MIR 53 114 -148 1975 128 27 7 chr6 58914726 58915022 -130364532 - AluSg SINE Alu -8 302 1 220 268 56 113 chr6 58915022 58915104 -130364450 + MIR SINE MIR 114 186 -76 245 0 89 0 chr6 58915663 58915708 -130363846 + T-rich Low_complexity Low_complexity 3 51 0 628 248 38 6 chr6 58915768 58915925 -130363629 + MLT1G1 LTR MaLR 434 595 0 216 392 20 14 chr6 58915946 58916094 -130363460 - MIR3 SINE MIR -1 207 59 480 284 8 64 chr6 58917372 58917636 -130361918 + HAL1 LINE L1 90 338 -2169 1538 137 4 0 chr6 58918016 58918249 -130361305 + MER46A DNA MER2_type 3 236 0 945 292 168 14 chr6 58918628 58919063 -130360491 - L2 LINE L2 0 3313 2812 25 51 0 0 chr6 58919132 58919171 -130360383 + AT_rich Low_complexity Low_complexity 1 39 0 865 333 109 66 chr6 58919173 58920981 -130358573 - L2 LINE L2 -1205 2109 224 1840 171 55 6 chr6 58920992 58921338 -130358216 + MLT1A1 LTR MaLR 3 365 0 718 282 18 26 chr6 58922269 58922496 -130357058 - MIR SINE MIR 0 262 38 1309 180 41 103 chr6 58923809 58924198 -130355356 - MLT1A1 LTR MaLR 0 365 1 218 333 45 15 chr6 58924293 58924425 -130355129 + L2 LINE L2 2741 2876 -438 266 278 90 23 chr6 58924646 58924779 -130354775 + L2 LINE L2 3172 3313 0 1738 201 57 41 chr6 58924859 58925304 -130354250 + MLT1D LTR MaLR 6 442 -63 2132 132 39 76 chr6 58925304 58925358 -130354196 + MER65A LTR ERV1 1 55 -390 1666 202 0 29 chr6 58925358 58925665 -130353889 + AluSx SINE Alu 1 298 -14 2132 132 39 76 chr6 58925665 58925932 -130353622 + MER65A LTR ERV1 55 304 -141 1862 164 0 4 chr6 58925932 58926267 -130353287 + AluSx SINE Alu 4 337 0 2132 132 39 76 chr6 58926267 58926404 -130353150 + MER65A LTR ERV1 304 445 0 1738 201 57 41 chr6 58926404 58926450 -130353104 + MLT1D LTR MaLR 442 505 0 224 30 30 0 chr6 58926544 58926577 -130352977 + (TG)n Simple_repeat Simple_repeat 2 35 0 280 246 105 53 chr6 58927096 58927210 -130352344 - MIR3 SINE MIR -19 189 70 1072 269 81 42 chr6 58927934 58928381 -130351173 + MLT1J LTR MaLR 3 466 -45 2374 25 43 0 chr6 58928754 58929035 -130350519 + AluY SINE Alu 1 293 -18 344 218 40 75 chr6 58929203 58929250 -130350304 + L1MC4a LINE L1 5720 5767 -2041 2008 138 5 68 chr6 58929250 58929650 -130349904 + THE1C LTR MaLR 1 375 0 344 218 40 75 chr6 58929650 58929776 -130349778 + L1MC4a LINE L1 5767 5887 -1921 201 304 14 0 chr6 58930078 58930147 -130349407 - MIR SINE MIR -97 165 96 439 259 172 43 chr6 58930213 58930445 -130349109 + MIR SINE MIR 1 262 0 456 289 140 22 chr6 58930560 58930882 -130348672 + MLT1J2 LTR MaLR 20 379 -71 671 130 0 28 chr6 58930882 58930990 -130348564 - FLAM_C SINE Alu -10 133 29 226 265 0 15 chr6 58933090 58933158 -130346396 + (TA)n Simple_repeat Simple_repeat 1 67 0 1099 102 11 6 chr6 58933192 58933287 -130346267 + (GAAA)n Simple_repeat Simple_repeat 1 273 0 1099 102 11 6 chr6 58933287 58933464 -130346090 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 308 348 63 21 chr6 58935964 58936150 -130343404 - MIR SINE MIR -7 201 5 681 267 64 48 chr6 58937757 58938008 -130341546 + MIR SINE MIR 1 255 -7 369 236 14 74 chr6 58938323 58938471 -130341083 + L1MC5 LINE L1 7763 7901 -60 218 176 20 0 chr6 58938521 58938572 -130340982 + (TA)n Simple_repeat Simple_repeat 2 53 0 195 246 373 0 chr6 58940530 58940648 -130338906 - MIR SINE MIR -31 231 70 201 323 20 10 chr6 58940897 58940996 -130338558 + L2 LINE L2 2763 2862 -452 796 219 6 0 chr6 58941024 58941188 -130338366 - U1 snRNA snRNA 0 165 1 275 315 10 123 chr6 58942392 58942449 -130337105 - MER5A DNA MER1_type 0 189 127 2098 128 10 0 chr6 58942449 58942745 -130336809 - AluSg SINE Alu -11 299 1 275 315 10 123 chr6 58942745 58942890 -130336664 - MER5A DNA MER1_type -62 127 10 349 161 0 32 chr6 58943308 58943370 -130336184 - MER8 DNA MER2_type 0 239 180 2659 120 35 2 chr6 58943379 58943804 -130335750 + Tigger2 DNA MER2_type 2280 2718 0 523 279 89 11 chr6 58944160 58944339 -130335215 + MIR SINE MIR 1 193 -69 550 189 176 0 chr6 58944349 58944411 -130335143 - MER58A DNA MER1_type -2202 218 168 297 0 0 0 chr6 58944411 58944444 -130335110 + (TC)n Simple_repeat Simple_repeat 2 34 0 550 189 176 0 chr6 58944444 58944529 -130335025 - MER58A DNA MER1_type -2252 168 45 207 0 0 0 chr6 58945056 58945079 -130334475 + (TTAAA)n Simple_repeat Simple_repeat 5 27 0 219 125 31 16 chr6 58945177 58945241 -130334313 + (TA)n Simple_repeat Simple_repeat 1 65 0 322 269 29 29 chr6 58946952 58947056 -130332498 - MER5A DNA MER1_type -77 112 9 490 261 121 29 chr6 58947746 58947953 -130331601 - MIR SINE MIR -31 231 6 282 279 70 23 chr6 58951149 58951278 -130328276 - MIR SINE MIR -20 242 108 446 0 0 18 chr6 58951454 58951509 -130328045 + (TTG)n Simple_repeat Simple_repeat 2 55 0 23 0 0 0 chr6 58952729 58952752 -130326802 + AT_rich Low_complexity Low_complexity 1 23 0 203 136 45 0 chr6 58952939 58952983 -130326571 + (CATA)n Simple_repeat Simple_repeat 3 48 0 449 240 45 67 chr6 58953556 58953735 -130325819 + MER5B DNA MER1_type 4 178 0 357 284 21 78 chr6 58955540 58955681 -130323873 + MIR SINE MIR 20 152 -110 190 215 31 62 chr6 58957220 58957285 -130322269 - L2 LINE L2 -8 3264 3202 2366 86 3 0 chr6 58957410 58957702 -130321852 - AluSq SINE Alu -20 293 1 303 280 131 0 chr6 58958036 58958143 -130321411 - L2 LINE L2 0 3313 3193 250 321 0 0 chr6 58958518 58958599 -130320955 + MLT1K LTR MaLR 151 231 -357 198 0 0 0 chr6 58959131 58959153 -130320401 + (CA)n Simple_repeat Simple_repeat 1 22 0 395 270 9 27 chr6 58962020 58962131 -130317423 - MIR3 SINE MIR -11 197 89 314 291 37 32 chr6 58962138 58962327 -130317227 - LTR67 LTR ERVL -8 549 360 483 260 72 91 chr6 58962678 58962997 -130316557 - L2 LINE L2 -1 3312 3000 181 393 128 0 chr6 58963319 58963436 -130316118 - L2 LINE L2 0 3272 3141 3350 176 45 14 chr6 58963741 58964445 -130315109 + LTR8A LTR ERV1 1 726 -1 276 160 0 40 chr6 58965308 58965383 -130314171 + (TA)n Simple_repeat Simple_repeat 2 73 0 261 221 39 16 chr6 58965944 58966071 -130313483 + (TA)n Simple_repeat Simple_repeat 2 131 0 211 296 0 42 chr6 58967009 58967080 -130312474 + L2 LINE L2 3229 3296 -17 2630 121 0 0 chr6 58967401 58967765 -130311789 + THE1B LTR MaLR 1 364 0 326 198 0 130 chr6 58967905 58968082 -130311472 + Charlie7 DNA MER1_type 2 155 -2457 379 370 45 0 chr6 58968276 58968430 -130311124 - MIR SINE MIR -66 196 36 306 0 0 0 chr6 58968764 58968798 -130310756 + (TG)n Simple_repeat Simple_repeat 1 34 0 182 105 53 18 chr6 58968798 58968855 -130310699 + GA-rich Low_complexity Low_complexity 2 60 0 196 291 73 0 chr6 58969413 58969468 -130310086 - MER5B DNA MER1_type -59 119 61 1195 243 6 46 chr6 58970817 58971146 -130308408 + L3 LINE CR1 1261 1576 -1 467 220 71 37 chr6 58973219 58973425 -130306129 - L1M4 LINE L1 -2144 4002 3797 214 316 0 0 chr6 58973465 58973522 -130306032 + GA-rich Low_complexity Low_complexity 3 59 0 246 81 0 0 chr6 58974147 58974184 -130305370 + (GA)n Simple_repeat Simple_repeat 1 37 0 746 275 92 69 chr6 58975043 58975479 -130304075 - L2 LINE L2 -5 3308 2863 891 251 64 46 chr6 58976672 58976955 -130302599 - AluJo SINE Alu -12 290 3 414 235 10 39 chr6 58977259 58977361 -130302193 + MER5B DNA MER1_type 1 99 -79 233 270 111 0 chr6 58977698 58977761 -130301793 + L2 LINE L2 3242 3311 -2 2131 126 0 3 chr6 58979979 58980273 -130299281 + AluSx SINE Alu 1 293 -19 375 209 44 33 chr6 58980842 58980933 -130298621 + L2 LINE L2 3213 3304 -9 239 250 12 0 chr6 58981154 58981238 -130298316 + GA-rich Low_complexity Low_complexity 1 85 0 888 146 9 158 chr6 58981407 58981723 -130297831 - MER33 DNA MER1_type -1 323 55 205 297 31 16 chr6 58981964 58982028 -130297526 + L3 LINE CR1 1513 1577 0 224 118 59 0 chr6 58982913 58982981 -130296573 + (TA)n Simple_repeat Simple_repeat 1 72 0 323 327 48 0 chr6 58984112 58984216 -130295338 + MIR SINE MIR 37 145 -63 1591 170 3 40 chr6 58984619 58984919 -130294635 - AluJo SINE Alu -23 289 1 22 0 0 0 chr6 58991098 58991120 -130288434 + AT_rich Low_complexity Low_complexity 1 22 0 322 223 0 64 chr6 58991389 58991483 -130288071 - MIR SINE MIR -34 228 141 893 113 7 0 chr6 58991484 58991626 -130287928 - L1MA5A LINE L1 -4 6293 6151 190 173 13 26 chr6 58991696 58991742 -130287812 - MIR SINE MIR -87 121 74 335 285 89 25 chr6 58992464 58992622 -130286932 + L2 LINE L2 725 892 -2422 2186 116 140 8 chr6 58992823 58993201 -130286353 - MSTA LTR MaLR 0 428 1 1883 163 6 28 chr6 58993699 58994018 -130285536 + AluJb SINE Alu 1 312 0 248 290 16 0 chr6 58994024 58994086 -130285468 - L2 LINE L2 -28 3285 3223 1465 198 69 57 chr6 58994713 58995102 -130284452 - MSTD LTR MaLR -2 394 1 447 275 28 64 chr6 58995126 58995377 -130284177 - L2 LINE L2 -129 3184 2943 352 348 14 35 chr6 58996159 58996300 -130283254 - L2 LINE L2 -1 3271 3134 2756 153 30 6 chr6 58996370 58996894 -130282660 + L1MA8 LINE L1 5751 6287 -4 21 0 0 0 chr6 58996895 58996916 -130282638 + AT_rich Low_complexity Low_complexity 1 21 0 985 205 123 47 chr6 58996922 58997303 -130282251 + L1MEc LINE L1 1727 2136 -4260 39 0 0 0 chr6 58997362 58997401 -130282153 + AT_rich Low_complexity Low_complexity 1 39 0 1229 213 45 135 chr6 58997438 58997838 -130281716 - MLT2B1 LTR ERVL -48 366 3 584 189 0 0 chr6 58997840 58997967 -130281587 + L1MEc LINE L1 2190 2316 -4080 1002 48 0 0 chr6 58997967 58998092 -130281462 + L1PA5 LINE L1 6030 6154 0 834 214 18 7 chr6 58998151 58998400 -130281154 + L1MEc LINE L1 2260 2523 -3709 268 172 117 68 chr6 58998397 58998560 -130280994 + L1MEc LINE L1 3083 3253 -2962 * 211 168 53 0 chr6 58999299 58999394 -130280160 + (TA)n Simple_repeat Simple_repeat 1 100 0 4378 63 26 0 chr6 59000652 59001235 -130278319 + L1PA7 LINE L1 5556 6153 -1 227 318 100 27 chr6 59001302 59001412 -130278142 - MIR SINE MIR -73 135 18 1456 171 4 15 chr6 59001478 59001747 -130277807 - L1MB1 LINE L1 -294 5874 5609 1357 148 43 8 chr6 59001751 59002008 -130277546 + L1MB1 LINE L1 5900 6165 -3 4524 139 37 7 chr6 59002066 59002408 -130277146 + L1MC1 LINE L1 5559 5889 -444 292 58 19 39 chr6 59002408 59002460 -130277094 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 4524 139 37 7 chr6 59002460 59002860 -130276694 + L1MC1 LINE L1 5885 6325 -4 2053 108 40 3 chr6 59002860 59003156 -130276398 + AluY SINE Alu 1 307 -4 33 73 0 0 chr6 59003160 59003228 -130276326 + AT_rich Low_complexity Low_complexity 1 68 0 486 276 0 5 chr6 59003639 59003789 -130275765 + MIR SINE MIR 3 226 -36 353 261 152 18 chr6 59004019 59004184 -130275370 + MIR SINE MIR 42 228 -34 27 29 0 0 chr6 59004656 59004690 -130274864 + AT_rich Low_complexity Low_complexity 1 34 0 203 294 107 80 chr6 59005172 59005392 -130274162 - L3 LINE CR1 -530 1047 814 2829 13 0 0 chr6 59005392 59005703 -130273851 + AluYa5 SINE Alu 1 311 0 203 294 107 80 chr6 59005703 59005809 -130273745 - L3 LINE CR1 -763 814 712 338 290 36 14 chr6 59005815 59005953 -130273601 + L1ME4a LINE L1 5732 5872 -249 26 0 0 0 chr6 59006126 59006152 -130273402 + AT_rich Low_complexity Low_complexity 1 26 0 216 184 0 0 chr6 59006635 59006684 -130272870 + (CA)n Simple_repeat Simple_repeat 2 50 0 739 167 0 8 chr6 59007905 59008025 -130271529 + FLAM_A SINE Alu 1 119 -14 269 236 11 11 chr6 59008033 59008122 -130271432 + L1MC5 LINE L1 7837 7925 -36 2220 113 73 14 chr6 59008211 59008555 -130270999 - THE1B LTR MaLR 0 364 1 343 200 44 44 chr6 59008941 59009173 -130270381 + (TA)n Simple_repeat Simple_repeat 1 232 0 1137 192 58 31 chr6 59009213 59009504 -130270050 - MLT1A2 LTR MaLR -75 299 1 304 291 126 50 chr6 59010304 59010668 -130268886 + L1ME LINE L1 696 1087 -5118 656 333 73 14 chr6 59010707 59011271 -130268283 + L1ME LINE L1 1237 1833 -4563 26 50 0 0 chr6 59012088 59012128 -130267426 + AT_rich Low_complexity Low_complexity 1 40 0 553 208 100 85 chr6 59012131 59012339 -130267215 + L1ME LINE L1 2189 2369 -3846 480 323 35 10 chr6 59012339 59012540 -130267014 - MER63A DNA MER1_type 0 210 5 553 208 100 85 chr6 59012540 59012658 -130266896 + L1ME LINE L1 2369 2484 -3731 651 127 0 2 chr6 59012667 59012931 -130266623 + AluSx SINE Alu 1 314 0 776 188 0 61 chr6 59013111 59013322 -130266232 + Charlie5 DNA MER1_type 1 198 -2414 1056 86 6 61 chr6 59013322 59013485 -130266069 + MER4E LTR ERV1 1 154 -625 6092 200 36 24 chr6 59013490 59013542 -130266012 + Charlie5 DNA MER1_type 532 582 -2042 1740 132 0 0 chr6 59013542 59013800 -130265754 - AluSg1 SINE Alu -15 294 37 6092 200 36 24 chr6 59013800 59015274 -130264280 + Charlie5 DNA MER1_type 582 2076 -548 1618 162 49 125 chr6 59015502 59015538 -130264016 + Charlie5 DNA MER1_type 2093 2130 -494 2205 108 0 0 chr6 59015538 59015833 -130263721 - AluY SINE Alu -16 295 1 1618 162 49 125 chr6 59015833 59016371 -130263183 + Charlie5 DNA MER1_type 2130 2623 -1 663 236 16 11 chr6 59016374 59016556 -130262998 + L1ME LINE L1 2671 2853 -3362 23 0 0 0 chr6 59016726 59016749 -130262805 + AT_rich Low_complexity Low_complexity 1 23 0 2196 91 7 3 chr6 59016749 59017047 -130262507 + AluSp SINE Alu 1 299 -14 23 0 0 0 chr6 59017465 59017488 -130262066 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 59018158 59018179 -130261375 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 59018369 59018391 -130261163 + AT_rich Low_complexity Low_complexity 1 22 0 3971 63 0 0 chr6 59018944 59019452 -130260102 + L1PA5 LINE L1 5646 6153 -1 288 227 196 21 chr6 59019837 59019934 -130259620 + MIR SINE MIR 19 132 -76 2452 182 47 41 chr6 59020060 59020549 -130259005 + MLT1D LTR MaLR 1 492 -13 576 265 115 10 chr6 59020627 59020873 -130258681 + L1M3 LINE L1 5566 5831 -340 244 164 146 55 chr6 59020919 59021029 -130258525 + L1ME4a LINE L1 5979 6098 -23 2325 91 3 3 chr6 59021356 59021665 -130257889 - AluSx SINE Alu -3 309 1 216 163 0 0 chr6 59022143 59022186 -130257368 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 231 276 0 92 chr6 59023545 59023632 -130255922 + L2 LINE L2 3234 3312 -1 2003 260 114 89 chr6 59023998 59025526 -130254028 + L2 LINE L2 1 1566 -1748 255 272 185 31 chr6 59025786 59025942 -130253612 + MIR SINE MIR 30 211 -46 2294 77 22 29 chr6 59025942 59026255 -130253299 - AluY SINE Alu 0 311 1 2036 165 39 90 chr6 59026391 59026554 -130253000 + MLT1D LTR MaLR 20 190 -315 2228 121 0 0 chr6 59026554 59026852 -130252702 + AluSg SINE Alu 6 303 -7 2036 165 39 90 chr6 59026852 59027198 -130252356 + MLT1D LTR MaLR 190 503 -2 325 234 54 71 chr6 59027230 59027414 -130252140 - L1MC4a LINE L1 -1762 6046 5866 277 363 0 11 chr6 59027650 59027741 -130251813 - L2 LINE L2 -619 2695 2606 193 250 0 0 chr6 59027745 59027789 -130251765 - MIR SINE MIR -168 94 51 2674 195 93 20 chr6 59028350 59029006 -130250548 - L1MB2 LINE L1 0 6171 5468 1639 196 45 85 chr6 59029019 59029721 -130249833 - MER4A LTR ERV1 -9 685 1 2038 191 88 31 chr6 59030327 59030804 -130248750 - MLT1D LTR MaLR 0 505 2 219 69 0 0 chr6 59030909 59030938 -130248616 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 414 0 0 0 chr6 59032792 59032838 -130246716 + (TC)n Simple_repeat Simple_repeat 1 46 0 584 227 136 47 chr6 59033228 59033633 -130245921 + L1M4 LINE L1 4198 4638 -1508 403 248 48 33 chr6 59033706 59033862 -130245692 + MIR SINE MIR 40 196 -62 268 297 54 0 chr6 59033902 59033976 -130245578 + L2 LINE L2 3136 3213 -59 764 302 131 0 chr6 59036320 59036595 -130242959 - LTR16A LTR ERVL -14 436 126 2296 89 92 0 chr6 59036620 59036945 -130242609 + THE1B LTR MaLR 1 355 -9 286 252 29 29 chr6 59036937 59037040 -130242514 - LTR16A1 LTR ERVL -351 106 4 * 2256 184 0 32 chr6 59037414 59037482 -130242072 - MLT1B LTR MaLR 0 390 321 2276 110 13 0 chr6 59037482 59037783 -130241771 + AluSq SINE Alu 1 305 -8 2256 184 0 32 chr6 59037783 59038117 -130241437 - MLT1B LTR MaLR -69 321 1 405 324 47 55 chr6 59038679 59038935 -130240619 - MIR SINE MIR -7 255 2 2299 187 49 5 chr6 59039560 59039967 -130239587 + MSTB LTR MaLR 1 425 -1 341 272 0 43 chr6 59040796 59040888 -130238666 + MER5A DNA MER1_type 80 167 -22 201 39 0 0 chr6 59041353 59041379 -130238175 + (GA)n Simple_repeat Simple_repeat 2 27 0 271 326 54 0 chr6 59042374 59042466 -130237088 + MLT1I LTR MaLR 7 103 -306 199 318 15 15 chr6 59042701 59042767 -130236787 - MIR SINE MIR -67 141 87 186 143 0 0 chr6 59042888 59042923 -130236631 + (CCCCCA)n Simple_repeat Simple_repeat 3 37 0 562 203 24 0 chr6 59043424 59043547 -130236007 - MIR SINE MIR -56 206 81 672 188 62 51 chr6 59046328 59046504 -130233050 - MER104 DNA MER2_type -1 179 2 420 263 0 66 chr6 59046807 59046959 -130232595 + MIR3 SINE MIR 67 208 0 306 306 0 48 chr6 59049163 59049287 -130230267 - 7SK RNA RNA -69 124 7 537 209 0 74 chr6 59051097 59051260 -130228294 - MER103 DNA DNA -1 165 15 2276 151 0 23 chr6 59051327 59051672 -130227882 - MER1B DNA MER1_type 0 337 1 2357 89 0 0 chr6 59053016 59053308 -130226246 + AluSc SINE Alu 1 292 -17 323 295 170 29 chr6 59053905 59054146 -130225408 - L2 LINE L2 -194 3078 2804 661 151 135 113 chr6 59054270 59054326 -130225228 - MER53 DNA DNA 0 189 136 3516 201 22 11 chr6 59054326 59054972 -130224582 + MER82 DNA MER2_type 1 653 0 661 151 135 113 chr6 59054972 59055100 -130224454 - MER53 DNA DNA -53 136 1 1097 180 0 6 chr6 59055102 59055285 -130224269 - MER58A DNA MER1_type -29 195 14 281 316 102 56 chr6 59056800 59056996 -130222558 - MIR3 SINE MIR -1 207 3 599 280 72 32 chr6 59057647 59057885 -130221669 - MIR SINE MIR -2 260 10 1048 166 126 25 chr6 59057885 59058084 -130221470 - MER20 DNA MER1_type 0 219 1 599 280 72 32 chr6 59058084 59058095 -130221459 - MIR SINE MIR -252 10 1 257 338 0 0 chr6 59058563 59058643 -130220911 - L2 LINE L2 0 3272 3193 286 185 0 120 chr6 59059328 59059350 -130220204 + MER112 DNA MER1_type 4 27 -233 2106 124 3 0 chr6 59059350 59059648 -130219906 + AluY SINE Alu 1 299 -12 286 185 0 120 chr6 59059648 59059717 -130219837 + MER112 DNA MER1_type 27 84 -176 463 202 6 121 chr6 59059783 59059956 -130219598 + MER112 DNA MER1_type 99 251 -9 1969 115 68 0 chr6 59060247 59060526 -130219028 + AluSq SINE Alu 2 299 -14 234 103 51 0 chr6 59062258 59062297 -130217257 + MER103 DNA DNA 2 42 -124 270 203 174 0 chr6 59062354 59062423 -130217131 - MER103 DNA DNA -75 91 11 2042 142 0 16 chr6 59062438 59062748 -130216806 + AluSq SINE Alu 1 305 -8 305 301 0 0 chr6 59063656 59063729 -130215825 + L2 LINE L2 3200 3272 0 251 315 0 0 chr6 59063936 59064009 -130215545 + MER117 DNA MER1_type 105 177 -20 302 44 0 22 chr6 59064642 59064687 -130214867 + (TG)n Simple_repeat Simple_repeat 2 45 0 206 130 0 130 chr6 59065026 59065080 -130214474 - L3 LINE CR1 -3 1574 1528 204 40 0 0 chr6 59065184 59065209 -130214345 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 246 303 0 26 chr6 59066805 59066881 -130212673 - L2 LINE L2 -14 3258 3185 186 268 71 0 chr6 59067416 59067472 -130212082 - MIR SINE MIR -19 243 184 191 375 9 18 chr6 59067906 59068018 -130211536 + MIR3 SINE MIR 93 203 -5 836 167 12 0 chr6 59068346 59068508 -130211046 + GA-rich Low_complexity Low_complexity 3 166 0 215 303 165 18 chr6 59068902 59069011 -130210543 + MIR SINE MIR 19 143 -65 181 93 0 47 chr6 59069973 59070016 -130209538 + (TCTCTG)n Simple_repeat Simple_repeat 6 46 0 1149 126 0 0 chr6 59071044 59071212 -130208342 - AluSg SINE Alu -16 296 137 515 75 0 0 chr6 59071212 59071279 -130208275 - AluSg SINE Alu -243 67 1 558 209 59 107 chr6 59071935 59072060 -130207494 - MER5B DNA MER1_type 0 178 63 2172 101 0 11 chr6 59072060 59072347 -130207207 - AluSx SINE Alu -24 288 5 558 209 59 107 chr6 59072347 59072408 -130207146 - MER5B DNA MER1_type -115 63 1 918 210 6 0 chr6 59072730 59072906 -130206648 + MER5B DNA MER1_type 2 178 0 218 245 31 41 chr6 59073039 59073137 -130206417 + GA-rich Low_complexity Low_complexity 4 100 0 2131 109 0 10 chr6 59074328 59074621 -130204933 - AluSg SINE Alu -17 293 4 2091 116 0 14 chr6 59074724 59075018 -130204536 + AluSx SINE Alu 3 292 -20 1449 112 0 10 chr6 59075825 59076031 -130203523 - AluSc SINE Alu -40 269 66 585 290 28 5 chr6 59076077 59076291 -130203263 + AluJo SINE Alu 1 219 -93 700 67 67 0 chr6 59076417 59076521 -130203033 + LTR61 LTR ERV1 485 595 0 280 197 28 14 chr6 59076521 59076589 -130202965 - MER119 DNA MER1_type -264 319 251 2320 88 0 3 chr6 59076706 59077003 -130202551 + AluSx SINE Alu 1 296 -16 806 146 15 7 chr6 59077137 59077274 -130202280 + AluJb SINE Alu 161 298 -14 405 0 0 0 chr6 59077292 59077337 -130202217 + (CA)n Simple_repeat Simple_repeat 2 46 0 304 196 56 56 chr6 59077362 59077469 -130202085 - L1 LINE L1 -1157 4989 4883 354 255 125 54 chr6 59077492 59077845 -130201709 - L1 LINE L1 -1313 4833 4456 1254 205 81 22 chr6 59077887 59078209 -130201345 + MER58B DNA MER1_type 1 341 0 196 211 35 88 chr6 59079270 59079327 -130200227 - L2 LINE L2 -78 3235 3182 1699 112 62 0 chr6 59079340 59079582 -130199972 + AluSx SINE Alu 1 257 -55 1624 181 21 11 chr6 59079719 59080006 -130199548 - AluJb SINE Alu -16 296 7 881 93 78 0 chr6 59080052 59080181 -130199373 - MER85 DNA T2_type 0 139 1 22 0 0 0 chr6 59081255 59081277 -130198277 + AT_rich Low_complexity Low_complexity 1 22 0 459 240 98 22 chr6 59082369 59082552 -130197002 - L1MC4 LINE L1 -1 8041 7845 1398 130 174 12 chr6 59082712 59082965 -130196589 - AluSg SINE Alu -15 295 2 2166 121 0 13 chr6 59083144 59083459 -130196095 - AluSq SINE Alu 0 313 3 23 54 0 0 chr6 59083471 59083508 -130196046 + AT_rich Low_complexity Low_complexity 1 37 0 222 320 66 16 chr6 59084282 59084404 -130195150 - L2 LINE L2 -324 2989 2862 193 322 174 0 chr6 59084500 59084649 -130194905 + MIR SINE MIR 57 231 -31 1918 143 29 16 chr6 59084812 59085120 -130194434 + AluJb SINE Alu 1 312 0 2429 85 0 3 chr6 59086031 59086337 -130193217 - AluY SINE Alu -4 307 3 423 316 103 11 chr6 59086586 59086760 -130192794 - MIR3 SINE MIR -3 205 16 1241 203 106 47 chr6 59087314 59087654 -130191900 + MLT1A1 LTR MaLR 1 360 -5 2437 90 7 0 chr6 59087784 59088094 -130191460 + AluSx SINE Alu 1 312 0 1294 207 51 67 chr6 59088344 59088716 -130190838 - MLT1B LTR MaLR -6 384 19 484 248 9 0 chr6 59088725 59088830 -130190724 - MER5A DNA MER1_type -80 109 4 22 0 0 0 chr6 59090039 59090061 -130189493 + AT_rich Low_complexity Low_complexity 1 22 0 5419 144 48 18 chr6 59090066 59091471 -130188083 + L1PB1 LINE L1 10 2342 -4521 * 14049 187 24 18 chr6 59091470 59096108 -130183446 + L1PB1 LINE L1 2224 6867 0 26 0 0 0 chr6 59096110 59096136 -130183418 + AT_rich Low_complexity Low_complexity 1 26 0 405 308 32 0 chr6 59096355 59096511 -130183043 - MIR SINE MIR 0 262 102 1258 235 191 16 chr6 59096517 59097019 -130182535 - MLT1G LTR MaLR 0 590 23 3073 85 4 26 chr6 59097066 59097524 -130182030 - L1PB1 LINE L1 0 6151 5704 1857 140 0 67 chr6 59098253 59098581 -130180973 - AluSx SINE Alu -6 306 1 23 33 0 0 chr6 59098637 59098667 -130180887 + AT_rich Low_complexity Low_complexity 1 30 0 1373 147 182 0 chr6 59098868 59099126 -130180428 - AluJb SINE Alu -7 305 1 28 48 0 0 chr6 59099688 59099730 -130179824 + AT_rich Low_complexity Low_complexity 1 42 0 15227 90 4 2 chr6 59100977 59101363 -130178191 - L1PA7 LINE L1 0 6154 5770 1580 90 0 5 chr6 59101363 59101564 -130177990 - AluSp SINE Alu -113 200 1 15227 90 4 2 chr6 59101564 59104169 -130175385 - L1PA7 LINE L1 -384 5770 3221 1402 196 44 30 chr6 59104173 59104469 -130175085 - AluJo SINE Alu -12 300 1 21 0 0 0 chr6 59104499 59104520 -130175034 + AT_rich Low_complexity Low_complexity 1 21 0 222 296 197 40 chr6 59104777 59104929 -130174625 - MIR3 SINE MIR -3 205 30 2441 239 107 46 chr6 59104995 59106039 -130173515 - L1MC4 LINE L1 -2 8040 6933 639 251 101 10 chr6 59106049 59106248 -130173306 - L1ME1 LINE L1 -5 6161 5945 1017 256 132 14 chr6 59106263 59106619 -130172935 - L1MC4 LINE L1 -1097 6945 6548 1957 83 64 4 chr6 59106687 59106979 -130172575 - AluY SINE Alu 0 308 1 264 218 36 0 chr6 59108370 59108425 -130171129 - MLT1I LTR MaLR -232 177 121 1478 266 174 28 chr6 59110431 59111157 -130168397 + L2 LINE L2 2304 3134 -179 303 220 0 0 chr6 59111216 59111275 -130168279 - L1MC4 LINE L1 -1338 6704 6646 3215 92 9 18 chr6 59111418 59111876 -130167678 - L1PA8A LINE L1 -13 6118 5665 310 315 79 39 chr6 59112299 59112426 -130167128 - L2 LINE L2 0 3272 3141 274 311 121 18 chr6 59112825 59113098 -130166456 - L2 LINE L2 -630 2684 2384 551 260 144 74 chr6 59113209 59113375 -130166179 - L2 LINE L2 -957 2357 2204 2159 100 0 13 chr6 59113375 59113674 -130165880 + AluSg SINE Alu 1 295 -15 551 260 144 74 chr6 59113674 59114034 -130165520 - L2 LINE L2 -1110 2204 1794 411 298 286 0 chr6 59115581 59115759 -130163795 - MIR SINE MIR -32 230 2 446 308 105 69 chr6 59116167 59116833 -130162721 + L1MEc LINE L1 44 733 -5663 883 265 33 0 chr6 59116864 59117075 -130162479 - MER20 DNA MER1_type -1 218 1 240 278 96 9 chr6 59117211 59117326 -130162228 + L1ME2 LINE L1 6031 6155 -9 559 317 38 42 chr6 59117545 59117807 -130161747 + MIR SINE MIR 2 262 0 24 0 0 0 chr6 59118127 59118151 -130161403 + AT_rich Low_complexity Low_complexity 1 24 0 2446 68 0 3 chr6 59118400 59118696 -130160858 - AluY SINE Alu -8 303 9 53 17 0 0 chr6 59119469 59119529 -130160025 + AT_rich Low_complexity Low_complexity 1 60 0 313 266 43 21 chr6 59120176 59120270 -130159284 + L3 LINE CR1 1481 1576 -1 693 218 14 14 chr6 59121002 59121144 -130158410 - FRAM SINE Alu -24 152 11 336 256 64 48 chr6 59121626 59121751 -130157803 + L2 LINE L2 3187 3313 0 206 244 0 0 chr6 59121839 59121884 -130157670 + L2 LINE L2 3265 3309 -4 822 158 0 16 chr6 59122666 59122793 -130156761 - FLAM_C SINE Alu -18 125 1 24 32 0 0 chr6 59122833 59122864 -130156690 + AT_rich Low_complexity Low_complexity 1 31 0 315 250 78 17 chr6 59122871 59122987 -130156567 - L1MA9 LINE L1 -56 6256 6134 1486 178 0 45 chr6 59123135 59123427 -130156127 - AluJo SINE Alu -31 281 3 2163 107 0 10 chr6 59123573 59123872 -130155682 - AluSx SINE Alu -16 296 1 953 169 0 3 chr6 59124033 59124264 -130155290 + AluJb SINE Alu 1 296 -16 256 256 81 23 chr6 59126464 59126550 -130153004 + MER3 DNA MER1_type 13 103 -106 * 580 178 85 8 chr6 59126501 59126619 -130152935 - MER3 DNA MER1_type -5 204 78 192 314 246 17 chr6 59126691 59126809 -130152745 - MIR3 SINE MIR -54 154 10 2222 77 27 3 chr6 59127696 59127996 -130151558 - AluY SINE Alu -2 309 3 5282 189 51 10 chr6 59128008 59129396 -130150158 - L1MC1 LINE L1 0 6333 4897 22 70 0 0 chr6 59129583 59129626 -130149928 + AT_rich Low_complexity Low_complexity 1 43 0 639 235 69 65 chr6 59129650 59129927 -130149627 - Charlie7 DNA MER1_type -304 2308 2028 2300 62 0 33 chr6 59129927 59130231 -130149323 + AluY SINE Alu 1 294 -17 639 235 69 65 chr6 59130231 59130259 -130149295 - Charlie7 DNA MER1_type -584 2028 2002 2667 281 118 11 chr6 59130270 59131435 -130148119 + L1MEc LINE L1 45 1333 -5063 757 313 27 0 chr6 59131451 59131710 -130147844 + L1MEc LINE L1 1565 1830 -4566 22 35 0 0 chr6 59131977 59132006 -130147548 + AT_rich Low_complexity Low_complexity 1 29 0 239 310 31 86 chr6 59133016 59133345 -130146209 + L2 LINE L2 2949 3312 -1 505 285 120 15 chr6 59133491 59133691 -130145863 - MLT1L LTR MaLR -25 590 370 294 206 0 0 chr6 59134295 59134363 -130145191 + (CA)n Simple_repeat Simple_repeat 2 69 0 253 229 96 0 chr6 59134363 59134446 -130145108 - L1MC4 LINE L1 -1337 6705 6615 230 185 37 0 chr6 59134447 59134501 -130145053 - L1MC4 LINE L1 -1339 6703 6648 314 359 24 12 chr6 59134990 59135160 -130144394 + L1M4 LINE L1 529 700 -5327 210 324 0 19 chr6 59135192 59135297 -130144257 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 317 280 17 58 chr6 59135304 59135384 -130144170 + L1M4 LINE L1 1043 1125 -4994 1059 241 13 8 chr6 59135384 59135620 -130143934 - MER8 DNA MER2_type -2 237 1 317 280 17 58 chr6 59135620 59135799 -130143755 + L1M4 LINE L1 1125 1211 -4908 * 834 120 0 14 chr6 59135793 59135935 -130143619 + L1 LINE L1 4465 4604 -1542 478 281 42 20 chr6 59135959 59136294 -130143260 + L1ME3A LINE L1 5729 6127 -43 1532 185 10 36 chr6 59136749 59137051 -130142503 - AluJo SINE Alu -18 294 1 698 199 84 6 chr6 59137199 59137365 -130142189 + L1MB5 LINE L1 4922 5100 -1046 459 168 0 109 chr6 59137365 59137466 -130142088 + MER21B LTR ERV1 1 90 -773 2165 208 69 16 chr6 59137598 59138088 -130141466 + MER21B LTR ERV1 294 809 -54 705 203 67 121 chr6 59138112 59138445 -130141109 + L1MB5 LINE L1 5089 5411 -777 3364 191 81 30 chr6 59138445 59139210 -130140344 + L1MB5 LINE L1 5371 6174 0 25 83 0 0 chr6 59140568 59140628 -130138926 + AT_rich Low_complexity Low_complexity 1 60 0 3854 154 41 22 chr6 59141057 59141857 -130137697 - L1MA8 LINE L1 -3 6288 5474 6121 85 3 6 chr6 59142954 59143826 -130135728 + L1PB1 LINE L1 5282 6150 -1 31 0 0 0 chr6 59143831 59143862 -130135692 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr6 59143934 59143967 -130135587 + AT_rich Low_complexity Low_complexity 1 33 0 1322 173 3 107 chr6 59147516 59147834 -130131720 + AluJo SINE Alu 17 301 -11 5163 109 46 16 chr6 59151593 59152463 -130127091 - L1MA3 LINE L1 -3 6302 5407 24 67 0 0 chr6 59153133 59153178 -130126376 + AT_rich Low_complexity Low_complexity 1 45 0 25 51 0 0 chr6 59153990 59154029 -130125525 + AT_rich Low_complexity Low_complexity 1 39 0 1573 166 0 73 chr6 59154310 59154623 -130124931 + AluJb SINE Alu 1 290 -22 265 254 0 42 chr6 59154903 59154974 -130124580 + MIR3 SINE MIR 131 198 -10 203 290 14 43 chr6 59155085 59155154 -130124400 - MIR SINE MIR -184 78 12 186 43 0 0 chr6 59155865 59155888 -130123666 + (TA)n Simple_repeat Simple_repeat 2 24 0 356 230 102 27 chr6 59156015 59156202 -130123352 + L1ME3A LINE L1 5750 5950 -220 23 0 0 0 chr6 59156467 59156490 -130123064 + AT_rich Low_complexity Low_complexity 1 23 0 1411 89 49 18 chr6 59157560 59157784 -130121770 + L1MA3 LINE L1 5778 6008 -297 11097 139 53 10 chr6 59157808 59159696 -130119858 - Tigger1 DNA MER2_type -448 1970 1 2051 161 72 22 chr6 59160242 59160647 -130118907 - MSTB LTR MaLR -1 425 1 35 0 0 0 chr6 59160673 59160708 -130118846 + AT_rich Low_complexity Low_complexity 1 35 0 351 0 0 0 chr6 59160708 59160747 -130118807 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1694 120 0 16 chr6 59160748 59160998 -130118556 - AluY SINE Alu -65 246 1 2114 145 0 6 chr6 59160998 59161309 -130118245 - AluSx SINE Alu -3 309 1 262 254 0 32 chr6 59161355 59161418 -130118136 + MIR SINE MIR 66 126 -82 1819 174 10 7 chr6 59161870 59162180 -130117374 - AluJo SINE Alu -1 311 1 183 290 77 77 chr6 59162258 59162441 -130117113 + L2 LINE L2 2205 2387 -927 2133 110 7 3 chr6 59162952 59163242 -130116312 + AluSx SINE Alu 1 291 -21 232 360 53 0 chr6 59163349 59163463 -130116091 + L2 LINE L2 3193 3312 -1 9311 177 16 3 chr6 59163996 59166783 -130112771 - L1PB1 LINE L1 -4 6863 4044 3120 236 76 12 chr6 59166800 59167775 -130111779 - L1PB1 LINE L1 -5821 1042 6 239 339 95 36 chr6 59168326 59168494 -130111060 + MIR SINE MIR 20 197 -65 23 33 0 0 chr6 59168660 59168690 -130110864 + AT_rich Low_complexity Low_complexity 1 30 0 387 0 0 0 chr6 59169595 59169638 -130109916 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr6 59169638 59169659 -130109895 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr6 59170455 59170491 -130109063 + AT_rich Low_complexity Low_complexity 1 36 0 344 283 124 14 chr6 59172181 59172326 -130107228 + MIR SINE MIR 77 237 -25 236 167 24 0 chr6 59172846 59172888 -130106666 + MLT1K LTR MaLR 544 586 -2 1469 185 0 39 chr6 59173592 59173900 -130105654 - AluJb SINE Alu -12 300 5 776 181 94 35 chr6 59174988 59175159 -130104395 - Charlie1a DNA MER1_type -1216 239 59 271 312 13 13 chr6 59175170 59175247 -130104307 + L2 LINE L2 3196 3272 0 569 303 55 43 chr6 59175503 59175757 -130103797 - MIR SINE MIR -4 258 2 1740 147 52 36 chr6 59176079 59176386 -130103168 + AluJo SINE Alu 1 312 0 278 294 64 9 chr6 59176570 59176679 -130102875 + MIR SINE MIR 20 134 -128 206 233 23 93 chr6 59176669 59176755 -130102799 - L3b LINE CR1 -208 1375 1296 * 1826 139 18 7 chr6 59177892 59178172 -130101382 - AluSx SINE Alu -29 283 1 1570 164 132 62 chr6 59178482 59178921 -130100633 - MLT1D LTR MaLR 0 505 36 866 194 23 11 chr6 59179499 59179674 -130099880 + MER110 LTR ERV1 1 177 -314 1995 172 75 34 chr6 59179692 59180133 -130099421 + LTR2B LTR ERV1 32 490 0 3159 74 7 0 chr6 59180133 59180551 -130099003 + Harlequin LTR ERV1 1 421 -6475 37399 61 5 2 chr6 59180563 59186082 -130093472 - L1PA5 LINE L1 -1 6153 623 759 74 0 0 chr6 59186080 59186175 -130093379 - L1PA5 LINE L1 -6048 98 4 * 49348 70 20 11 chr6 59186175 59192603 -130086951 + Harlequin LTR ERV1 413 6896 0 1970 182 77 34 chr6 59192619 59193059 -130086495 + LTR2B LTR ERV1 32 490 0 924 238 123 18 chr6 59193064 59193341 -130086213 + MER110 LTR ERV1 179 484 -7 2763 149 5 29 chr6 59193767 59194210 -130085344 + Tigger2a DNA MER2_type 3 434 0 349 247 43 0 chr6 59194374 59194467 -130085087 + MER96 DNA MER1_type? 1 97 -78 771 328 91 24 chr6 59194578 59194978 -130084576 - L2 LINE L2 -281 2991 2554 2371 140 15 0 chr6 59194978 59195320 -130084234 - MER7A DNA MER2_type -1 345 1 771 328 91 24 chr6 59195320 59195405 -130084149 - L2 LINE L2 -718 2554 2476 233 277 0 15 chr6 59195450 59195515 -130084039 + GA-rich Low_complexity Low_complexity 6 69 0 2125 160 90 5 chr6 59195613 59196014 -130083540 + L1MB2 LINE L1 5737 6171 0 995 327 115 32 chr6 59196014 59196769 -130082785 - L2 LINE L2 -1291 2023 1206 400 157 88 96 chr6 59196777 59196972 -130082582 + HsTC2 DNA Tc2 4 1898 0 193 264 149 25 chr6 59196983 59197104 -130082450 - L2 LINE L2 -2118 1196 1061 287 379 43 14 chr6 59197420 59197560 -130081994 - L2 LINE L2 -4 3268 3125 591 272 42 37 chr6 59197577 59197794 -130081760 - L2 LINE L2 -2 3311 3094 1328 140 176 4 chr6 59197838 59198088 -130081466 - AluSx SINE Alu -19 293 1 620 306 73 87 chr6 59198099 59198593 -130080961 - MLT1L LTR MaLR -17 598 112 310 310 0 0 chr6 59198629 59198700 -130080854 - L2 LINE L2 -259 3054 2984 204 305 37 0 chr6 59199333 59199415 -130080139 + MIR3 SINE MIR 114 198 -10 197 260 77 67 chr6 59199627 59199731 -130079823 + L2 LINE L2 3169 3273 -40 320 248 10 30 chr6 59199732 59199759 -130079795 + L1MCa LINE L1 1970 1996 -4430 936 207 11 0 chr6 59199759 59199933 -130079621 + L1MC1 LINE L1 6151 6326 -7 320 248 10 30 chr6 59199933 59200006 -130079548 + L1MCa LINE L1 1996 2068 -4358 * 343 256 47 0 chr6 59199973 59200059 -130079495 + L1MC4 LINE L1 6894 6983 -1339 207 0 0 0 chr6 59200059 59200082 -130079472 + (TA)n Simple_repeat Simple_repeat 2 24 0 1634 169 10 30 chr6 59200084 59200380 -130079174 - AluJo SINE Alu -22 290 1 499 260 85 6 chr6 59200816 59200993 -130078561 - MLT1I LTR MaLR -13 396 206 536 217 13 96 chr6 59202868 59203025 -130076529 + MER97b DNA MER1_type? 23 166 -887 242 198 83 42 chr6 59203651 59203747 -130075807 + L1MC4 LINE L1 7943 8042 0 546 294 0 16 chr6 59203760 59203886 -130075668 - MER5B DNA MER1_type -54 124 1 432 0 0 0 chr6 59205176 59205224 -130074330 + (CA)n Simple_repeat Simple_repeat 2 49 0 189 132 0 0 chr6 59205874 59205912 -130073642 + (A)n Simple_repeat Simple_repeat 1 38 0 220 426 37 6 chr6 59207548 59207710 -130071844 + L2 LINE L2 2560 2726 -588 2508 67 0 19 chr6 59208119 59208433 -130071121 - AluY SINE Alu -3 308 1 244 13 0 203 chr6 59208697 59208776 -130070778 + (T)n Simple_repeat Simple_repeat 1 63 0 399 321 136 44 chr6 59208779 59209140 -130070414 - LTR33 LTR ERVL -92 429 36 219 157 0 0 chr6 59209762 59209813 -130069741 + (TATAA)n Simple_repeat Simple_repeat 2 52 0 340 275 31 42 chr6 59209847 59210040 -130069514 - L1ME LINE L1 -298 5823 5633 1576 169 3 77 chr6 59210400 59210737 -130068817 - AluJb SINE Alu 0 312 1 459 192 8 17 chr6 59210968 59211088 -130068466 + CT-rich Low_complexity Low_complexity 3 121 0 278 105 0 0 chr6 59211088 59211126 -130068428 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 1132 101 6 6 chr6 59211126 59211305 -130068249 + (TCC)n Simple_repeat Simple_repeat 2 180 0 204 167 62 0 chr6 59211309 59211357 -130068197 + L3b LINE CR1 1276 1326 -257 343 300 35 39 chr6 59211381 59211536 -130068018 + MIR SINE MIR 21 180 -62 13513 107 28 126 chr6 59211555 59213387 -130066167 + Tigger1 DNA MER2_type 1 2011 -407 252 0 0 0 chr6 59213387 59213415 -130066139 + (TATTG)n Simple_repeat Simple_repeat 2 29 0 1773 117 75 0 chr6 59213415 59213680 -130065874 - AluSq SINE Alu -27 286 2 13513 107 28 126 chr6 59213680 59214524 -130065030 + Tigger1 DNA MER2_type 2009 2416 -2 372 130 0 0 chr6 59214579 59214665 -130064889 + AluS SINE Alu 230 315 0 21 0 0 0 chr6 59215847 59215868 -130063686 + AT_rich Low_complexity Low_complexity 1 21 0 228 309 0 0 chr6 59217852 59217907 -130061647 - L2 LINE L2 -19 3253 3199 370 250 224 0 chr6 59218918 59219074 -130060480 + MER20B DNA MER1_type 1 191 -592 409 327 6 42 chr6 59219379 59219547 -130060007 - MIR3 SINE MIR -27 181 20 571 250 51 45 chr6 59220445 59220621 -130058933 + MIR3 SINE MIR 11 187 -21 256 311 0 0 chr6 59221070 59221144 -130058410 + (CATA)n Simple_repeat Simple_repeat 1 74 0 278 338 35 49 chr6 59221144 59221286 -130058268 - L2 LINE L2 -36 3236 3097 524 271 63 81 chr6 59221501 59221722 -130057832 - MIR SINE MIR -43 219 3 1865 197 129 6 chr6 59221819 59222331 -130057223 - MER69 DNA AcHobo -42 2484 1910 867 256 34 25 chr6 59222331 59222569 -130056985 - MER69 DNA AcHobo -892 334 95 414 271 10 0 chr6 59222611 59222707 -130056847 - MER69 DNA AcHobo -1129 97 1 667 216 48 18 chr6 59223166 59223333 -130056221 - L1PA15 LINE L1 0 6165 5994 2283 99 3 3 chr6 59223562 59223866 -130055688 - AluSg SINE Alu -6 304 1 248 219 47 0 chr6 59224474 59224538 -130055016 - MER115 DNA AcHobo -575 118 52 1155 168 82 5 chr6 59224538 59224746 -130054808 - MER58A DNA MER1_type 0 224 1 21 0 0 0 chr6 59225158 59225179 -130054375 + AT_rich Low_complexity Low_complexity 1 21 0 252 274 196 39 chr6 59225503 59225605 -130053949 + L2 LINE L2 3155 3272 0 193 271 85 0 chr6 59225625 59225684 -130053870 - L2 LINE L2 -3 3310 3247 556 260 158 0 chr6 59226175 59226321 -130053233 - MER5A DNA MER1_type -9 180 12 420 277 25 74 chr6 59227865 59228067 -130051487 + MIR SINE MIR 6 197 -65 240 274 132 25 chr6 59228321 59228525 -130051029 - L1ME4a LINE L1 -102 6019 5794 1741 215 48 3 chr6 59229301 59229678 -130049876 - MER63 DNA MER1_type 0 1060 667 220 231 19 0 chr6 59230672 59230724 -130048830 - MER5B DNA MER1_type -41 137 85 305 230 126 11 chr6 59231884 59231971 -130047583 + L2 LINE L2 3213 3309 -4 395 257 142 0 chr6 59232345 59232458 -130047096 - MIR SINE MIR -49 213 85 612 276 157 51 chr6 59232459 59232891 -130046663 - LTR67 LTR ERVL -30 527 50 324 67 50 0 chr6 59233211 59233271 -130046283 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 281 146 0 0 chr6 59233333 59233381 -130046173 - Alu SINE Alu -6 296 249 186 250 0 0 chr6 59333431 59333467 -129946087 + MIR SINE MIR 225 260 -2 455 259 34 10 chr6 59333972 59334121 -129945433 - MIR3 SINE MIR -69 139 6 495 156 0 0 chr6 59335326 59335416 -129944138 - L1MB7 LINE L1 -8 6176 6087 1642 204 6 14 chr6 59335417 59335770 -129943784 - L1MB7 LINE L1 -322 5862 5513 272 250 29 0 chr6 59335809 59335877 -129943677 + MLT1L LTR MaLR 5 74 -541 340 258 159 6 chr6 59335974 59336137 -129943417 - LTR16A1 LTR ERVL -83 374 187 2231 122 3 3 chr6 59336624 59336935 -129942619 - AluSx SINE Alu -1 311 1 288 143 0 0 chr6 59337463 59337519 -129942035 + (GA)n Simple_repeat Simple_repeat 1 56 0 369 141 0 0 chr6 59339188 59339259 -129940295 + (GA)n Simple_repeat Simple_repeat 1 71 0 180 274 0 0 chr6 59339326 59339377 -129940177 - L2 LINE L2 -1 3271 3221 1370 265 57 0 chr6 59340502 59340887 -129938667 - LTR16C LTR ERVL 0 491 85 2367 99 0 0 chr6 59341186 59341490 -129938064 - AluSg1 SINE Alu -5 304 1 1187 130 6 0 chr6 59343079 59343240 -129936314 - AluJb SINE Alu -17 295 134 283 234 32 121 chr6 59343267 59343293 -129936261 + L2 LINE L2 3164 3191 -122 2308 98 0 3 chr6 59343293 59343589 -129935965 - AluSg SINE Alu -15 295 1 283 234 32 121 chr6 59343589 59343686 -129935868 + L2 LINE L2 3191 3276 -37 3240 211 9 79 chr6 59343792 59343841 -129935713 - L1MEc LINE L1 -5468 928 877 2358 112 3 0 chr6 59343841 59344153 -129935401 - AluSp SINE Alu 0 313 1 3240 211 9 79 chr6 59344153 59345065 -129934489 - L1MEc LINE L1 -5519 877 34 295 252 165 0 chr6 59345203 59345318 -129934236 - MLT1H LTR MaLR -10 539 406 1438 148 5 0 chr6 59346216 59346426 -129933128 + AluJo SINE Alu 12 222 -90 562 179 0 16 chr6 59346426 59346549 -129933005 + FRAM SINE Alu 1 40 0 240 35 0 0 chr6 59346676 59346705 -129932849 + (TG)n Simple_repeat Simple_repeat 1 29 0 364 261 135 47 chr6 59346969 59347184 -129932370 - L2 LINE L2 -58 3255 3022 286 113 38 0 chr6 59348708 59348761 -129930793 - Alu SINE Alu 0 300 246 536 145 16 59 chr6 59348769 59348955 -129930599 + CT-rich Low_complexity Low_complexity 3 180 0 1137 55 11 27 chr6 59348959 59349142 -129930412 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 209 193 0 18 chr6 59349154 59349211 -129930343 + CT-rich Low_complexity Low_complexity 1 56 0 2204 128 7 0 chr6 59349211 59349516 -129930038 - AluSx SINE Alu -3 309 3 392 256 16 40 chr6 59349645 59349770 -129929784 + MIR3 SINE MIR 10 131 -77 451 225 0 45 chr6 59349815 59349926 -129929628 + MER5A DNA MER1_type 4 109 -80 394 284 72 7 chr6 59350484 59350631 -129928923 + MER5B DNA MER1_type 3 189 0 202 321 132 9 chr6 59351235 59351341 -129928213 - MIR SINE MIR -71 137 19 595 239 78 34 chr6 59352342 59352587 -129926967 + MIR SINE MIR 3 251 -11 1289 302 152 29 chr6 59352844 59354418 -129925136 + L2 LINE L2 1531 3310 -3 252 77 0 0 chr6 59354503 59354542 -129925012 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 309 300 190 31 chr6 59355844 59355938 -129923616 + L2 LINE L2 2640 2718 -596 2038 116 59 31 chr6 59355938 59356292 -129923262 + THE1B LTR MaLR 1 364 0 309 300 190 31 chr6 59356292 59356487 -129923067 + L2 LINE L2 2718 2975 -339 657 219 100 43 chr6 59356710 59356920 -129922634 + MLT1J LTR MaLR 33 254 -257 867 212 53 17 chr6 59357775 59357998 -129921556 + MLT1A2 LTR MaLR 1 235 -161 389 82 33 0 chr6 59357998 59358059 -129921495 + (TCTCCC)n Simple_repeat Simple_repeat 6 68 0 322 330 0 0 chr6 59358059 59358150 -129921404 + MLT1A2 LTR MaLR 173 263 -111 2253 136 14 3 chr6 59358150 59358511 -129921043 + MLT1A1 LTR MaLR 1 365 0 2357 114 0 3 chr6 59358549 59358855 -129920699 - AluSq SINE Alu -8 305 1 752 254 47 19 chr6 59358944 59359157 -129920397 - MIR SINE MIR -35 227 9 261 224 26 26 chr6 59359498 59359574 -129919980 - MIR3 SINE MIR -21 187 112 220 241 0 0 chr6 59360880 59360934 -129918620 - MIR SINE MIR -65 143 90 302 299 24 24 chr6 59361331 59361495 -129918059 + GA-rich Low_complexity Low_complexity 4 167 0 2235 115 3 13 chr6 59361538 59361851 -129917703 - AluSg SINE Alu 0 310 1 260 242 0 48 chr6 59361887 59361949 -129917605 + MIR3 SINE MIR 98 156 -52 494 187 122 8 chr6 59362275 59362398 -129917156 + MIR SINE MIR 21 157 -105 180 0 0 0 chr6 59363089 59363109 -129916445 + (T)n Simple_repeat Simple_repeat 1 20 0 1891 135 3 75 chr6 59363124 59363458 -129916096 - AluJb SINE Alu 0 312 3 5364 160 34 25 chr6 59364007 59364513 -129915041 - L1MC2 LINE L1 -2 6342 5842 2202 122 0 0 chr6 59364513 59364808 -129914746 - AluSx SINE Alu -15 297 3 5364 160 34 25 chr6 59364808 59365510 -129914044 - L1MC2 LINE L1 -502 5842 5122 267 182 107 74 chr6 59366316 59366437 -129913117 + L1M4 LINE L1 4931 5055 -1091 390 291 61 30 chr6 59366449 59366614 -129912940 + MIR SINE MIR 69 238 -24 287 249 92 54 chr6 59366628 59366803 -129912751 - L1MC/D LINE L1 -669 5501 5334 1931 143 10 27 chr6 59366803 59367104 -129912450 + AluJb SINE Alu 1 296 -16 287 249 92 54 chr6 59367104 59367161 -129912393 - L1MC/D LINE L1 -836 5334 5281 198 143 0 0 chr6 59367161 59367196 -129912358 + (TA)n Simple_repeat Simple_repeat 1 35 0 2537 73 7 0 chr6 59367366 59367666 -129911888 - AluSx SINE Alu -8 304 3 2425 178 18 12 chr6 59367677 59368165 -129911389 - L1MC3 LINE L1 0 7785 7295 2368 88 17 0 chr6 59368176 59368471 -129911083 - AluSx SINE Alu -12 300 1 2472 89 0 0 chr6 59369352 59369655 -129909899 - AluSx SINE Alu -9 303 1 330 219 35 35 chr6 59369766 59369880 -129909674 + L1ME4a LINE L1 6007 6120 -1 1920 230 62 4 chr6 59369985 59370438 -129909116 + REP3 LTR ERV 1 479 -83 1671 234 48 2 chr6 59370558 59370976 -129908578 + Charlie4a DNA MER1_type 2 438 -70 306 284 64 28 chr6 59371013 59371122 -129908432 + MIR3 SINE MIR 70 182 -26 373 254 143 37 chr6 59371277 59371485 -129908069 + L1ME4a LINE L1 5678 5862 -259 1614 153 35 45 chr6 59371485 59371795 -129907759 - AluJb SINE Alu 0 307 1 373 254 143 37 chr6 59371795 59371991 -129907563 + L1ME4a LINE L1 5862 6121 0 941 262 20 28 chr6 59372696 59372963 -129906591 - MIR SINE MIR 0 262 1 2204 125 3 3 chr6 59373183 59373487 -129906067 + AluSx SINE Alu 1 304 -8 309 317 55 33 chr6 59374589 59374772 -129904782 - L3b LINE CR1 -136 1447 1261 2379 87 0 22 chr6 59374773 59375117 -129904437 + AluSq SINE Alu 1 313 0 350 260 77 0 chr6 59375611 59375715 -129903839 - MIR SINE MIR -73 189 78 647 312 92 4 chr6 59375731 59375981 -129903573 - L3 LINE CR1 -66 1511 1240 2163 81 0 90 chr6 59376003 59376325 -129903229 - AluSc SINE Alu -16 293 1 360 268 101 30 chr6 59376575 59376743 -129902811 - MIR SINE MIR -34 228 49 280 326 82 33 chr6 59376772 59376956 -129902598 - L3 LINE CR1 -571 1006 814 260 339 36 9 chr6 59378149 59378261 -129901293 - MIR SINE MIR -109 153 39 760 261 172 7 chr6 59378267 59378764 -129900790 - L2 LINE L2 0 3313 2723 404 268 176 13 chr6 59379745 59379898 -129899656 + MER5B DNA MER1_type 1 178 0 228 301 98 15 chr6 59380213 59380346 -129899208 - MIR3 SINE MIR -45 163 20 1061 185 77 0 chr6 59382907 59383102 -129896452 + MER63A DNA MER1_type 1 210 0 820 316 51 32 chr6 59383258 59383669 -129895885 + LTR33 LTR ERVL 103 521 0 6313 148 24 11 chr6 59385322 59387397 -129892157 + L1MA7 LINE L1 4187 6289 -2 1758 166 21 19 chr6 59387422 59387747 -129891807 + MLT2B1 LTR ERVL 195 520 0 242 273 0 0 chr6 59388301 59388367 -129891187 - L2 LINE L2 0 3272 3207 261 115 19 19 chr6 59388369 59388421 -129891133 - MIR3 SINE MIR -45 163 112 344 221 0 0 chr6 59388472 59388540 -129891014 - L2 LINE L2 0 3272 3205 1388 189 100 0 chr6 59388974 59389255 -129890299 - AluJo SINE Alu -3 309 1 345 154 63 0 chr6 59390091 59390234 -129889320 + (CA)n Simple_repeat Simple_repeat 1 152 0 293 145 53 40 chr6 59390214 59390366 -129889188 + (CATA)n Simple_repeat Simple_repeat 4 157 0 * 255 170 19 19 chr6 59390373 59390426 -129889128 + (CA)n Simple_repeat Simple_repeat 1 53 0 221 313 73 62 chr6 59391322 59391514 -129888040 - L2 LINE L2 -50 3222 3029 550 250 134 17 chr6 59391715 59391947 -129887607 + MIR SINE MIR 2 260 -2 192 152 0 0 chr6 59392450 59392483 -129887071 + (CA)n Simple_repeat Simple_repeat 1 33 0 1929 214 30 7 chr6 59392510 59392936 -129886618 + MER63B DNA MER1_type 1 436 0 5971 159 22 8 chr6 59394060 59396074 -129883480 - L1PA16 LINE L1 0 6166 4125 292 279 215 12 chr6 59396950 59397122 -129882432 + MIR SINE MIR 2 208 -54 1407 288 72 43 chr6 59397998 59398651 -129880903 + L3 LINE CR1 901 1572 -5 491 297 158 27 chr6 59398955 59399329 -129880225 - L3 LINE CR1 -11 1566 1144 192 281 0 47 chr6 59401322 59401386 -129878168 - L2 LINE L2 -11 3302 3242 267 326 57 47 chr6 59401433 59401626 -129877928 - MER117 DNA MER1_type 0 197 3 2362 120 0 0 chr6 59401655 59401964 -129877590 + AluSx SINE Alu 1 309 -3 281 277 107 9 chr6 59401974 59402086 -129877468 + MIR SINE MIR 32 154 -108 436 154 19 19 chr6 59403787 59403891 -129875663 + (TATG)n Simple_repeat Simple_repeat 2 105 0 520 271 93 70 chr6 59404492 59405140 -129874414 + L1MEd LINE L1 905 1670 -820 680 276 71 8 chr6 59405167 59405406 -129874148 + MIR SINE MIR 8 261 -1 30 45 0 0 chr6 59405459 59405503 -129874051 + AT_rich Low_complexity Low_complexity 1 44 0 253 306 0 24 chr6 59405896 59405981 -129873573 + (TATG)n Simple_repeat Simple_repeat 1 83 0 27 49 0 0 chr6 59406155 59406196 -129873358 + AT_rich Low_complexity Low_complexity 1 41 0 655 259 141 0 chr6 59408474 59408694 -129870860 + MIR SINE MIR 11 261 -1 2252 167 31 29 chr6 59410718 59411131 -129868423 + MLT2D LTR ERVL 1 414 0 1516 222 96 27 chr6 59413238 59413644 -129865910 - LTR16C LTR ERVL 0 491 58 237 273 61 0 chr6 59414813 59414879 -129864675 - L1M3de LINE L1 -5385 1268 1199 8595 229 43 40 chr6 59415082 59417920 -129861634 - L1ME1 LINE L1 -2 6164 3296 1874 133 48 3 chr6 59417920 59418214 -129861340 - AluSg SINE Alu -3 307 1 8595 229 43 40 chr6 59418214 59418660 -129860894 - L1ME1 LINE L1 -2870 3296 2853 1919 146 3 26 chr6 59418660 59418962 -129860592 - AluJo SINE Alu -17 295 1 634 287 145 14 chr6 59419856 59420387 -129859167 + L1ME LINE L1 5168 5770 -392 237 65 0 0 chr6 59420533 59420564 -129858990 + (TC)n Simple_repeat Simple_repeat 1 31 0 205 224 0 105 chr6 59420969 59421045 -129858509 + MIR SINE MIR 117 184 -78 187 336 28 28 chr6 59425089 59425196 -129854358 - L3b LINE CR1 -323 1260 1154 860 291 69 20 chr6 59425319 59425617 -129853937 + MLT1K LTR MaLR 98 413 -175 194 0 39 0 chr6 59425617 59425643 -129853911 + (GGAGA)n Simple_repeat Simple_repeat 5 31 0 466 300 20 0 chr6 59426347 59426497 -129853057 - MER91A DNA MER1_type 0 196 44 2255 121 0 3 chr6 59426813 59427118 -129852436 + AluSg1 SINE Alu 1 304 -5 216 0 0 0 chr6 59427208 59427232 -129852322 + (A)n Simple_repeat Simple_repeat 1 24 0 239 206 29 15 chr6 59427246 59427314 -129852240 - HsTC2 DNA Tc2 -1827 71 3 324 198 66 75 chr6 59427314 59427420 -129852134 + MIR SINE MIR 149 253 -9 1353 213 163 7 chr6 59430162 59430566 -129848988 - Charlie4a DNA MER1_type -1 507 41 2318 119 0 3 chr6 59430977 59431287 -129848267 + AluSx SINE Alu 1 309 -3 1095 226 4 13 chr6 59432307 59432533 -129847021 + MER58A DNA MER1_type 1 224 0 266 325 89 30 chr6 59432657 59432826 -129846728 - L1ME4a LINE L1 -188 5933 5755 278 218 98 98 chr6 59433194 59433387 -129846167 - L1MC5 LINE L1 -44 7917 7725 575 298 120 41 chr6 59435218 59436018 -129843536 + L2 LINE L2 1998 2860 -454 541 259 30 12 chr6 59436255 59436421 -129843133 + L2 LINE L2 3144 3312 -1 1879 149 10 24 chr6 59438374 59438669 -129840885 + AluJb SINE Alu 1 291 -21 362 278 111 12 chr6 59440012 59440174 -129839380 + MER5B DNA MER1_type 1 178 0 233 344 25 45 chr6 59440778 59440935 -129838619 - L1ME4a LINE L1 -393 5769 5616 2334 82 3 0 chr6 59441534 59441826 -129837728 + AluY SINE Alu 1 293 -18 333 275 52 28 chr6 59441902 59442113 -129837441 + L2 LINE L2 1897 2112 -1202 200 191 0 43 chr6 59442234 59442281 -129837273 - L2 LINE L2 -2 3311 3267 209 296 38 68 chr6 59444057 59444189 -129835365 + L2 LINE L2 3182 3309 -4 1895 131 7 37 chr6 59446188 59446528 -129833026 + AluSx SINE Alu 1 312 0 221 269 90 15 chr6 59446844 59446969 -129832585 - MIR SINE MIR -27 235 98 218 207 69 35 chr6 59447195 59447282 -129832272 + L2 LINE L2 3133 3222 -91 6018 154 14 5 chr6 59447289 59449256 -129830298 - L1PB3 LINE L1 0 6154 4171 180 0 0 0 chr6 59449362 59449382 -129830172 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 6675 112 110 11 chr6 59449624 59449868 -129829686 + Tigger3b DNA MER2_type 1 219 -2809 2146 100 18 4 chr6 59449868 59450180 -129829374 - AluSq SINE Alu 0 316 1 6675 112 110 11 chr6 59450180 59451053 -129828501 + Tigger3b DNA MER2_type 219 1230 -1 361 320 46 7 chr6 59453020 59453173 -129826381 - MER117 DNA MER1_type 0 197 39 2454 65 0 3 chr6 59454738 59455088 -129824466 + AluY SINE Alu 1 311 0 1885 187 0 0 chr6 59455345 59455650 -129823904 - AluSx SINE Alu -7 305 1 267 233 41 0 chr6 59455841 59455914 -129823640 - MIR SINE MIR -13 249 174 412 278 80 17 chr6 59455963 59456139 -129823415 - MIR SINE MIR -48 214 28 1395 119 87 145 chr6 59456196 59456339 -129823215 - L1MA9 LINE L1 -5 6307 6157 192 40 0 0 chr6 59456339 59456364 -129823190 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1395 119 87 145 chr6 59456364 59456622 -129822932 - L1MA9 LINE L1 -155 6157 5929 346 301 46 13 chr6 59457981 59458153 -129821401 + MIR SINE MIR 8 183 -64 222 288 0 14 chr6 59458285 59458358 -129821196 + L2 LINE L2 3242 3313 0 2251 117 13 0 chr6 59458389 59458696 -129820858 - AluSq SINE Alu -2 311 1 23 0 0 0 chr6 59458762 59458785 -129820769 + AT_rich Low_complexity Low_complexity 1 23 0 218 333 124 12 chr6 59459111 59459369 -129820185 + L2 LINE L2 1393 1679 -1635 631 304 28 4 chr6 59459578 59459831 -129819723 + L2 LINE L2 1706 1964 -1350 492 276 81 88 chr6 59459860 59460088 -129819466 + MLT1I LTR MaLR 102 329 -80 2282 102 0 0 chr6 59460088 59460381 -129819173 - AluSq SINE Alu -20 293 1 492 276 81 88 chr6 59460381 59460460 -129819094 + MLT1I LTR MaLR 329 407 -2 1228 294 141 51 chr6 59460469 59461392 -129818162 + L2 LINE L2 1970 2975 -339 612 241 136 20 chr6 59462354 59462429 -129817125 - L1ME4a LINE L1 -3 6118 6053 2030 143 0 0 chr6 59462429 59462715 -129816839 + AluJb SINE Alu 1 286 -26 612 241 136 20 chr6 59462715 59462934 -129816620 - L1ME4a LINE L1 -68 6053 5790 582 287 85 18 chr6 59463022 59463304 -129816250 - L2 LINE L2 0 3313 3013 213 299 15 15 chr6 59463421 59463488 -129816066 + MIR SINE MIR 71 137 -125 276 155 103 0 chr6 59463940 59463998 -129815556 + MIR SINE MIR 118 181 -81 222 361 58 0 chr6 59465645 59465836 -129813718 + L2 LINE L2 1893 2094 -1220 646 262 20 40 chr6 59466134 59466386 -129813168 + L1MEd LINE L1 1009 1255 -4864 189 0 0 0 chr6 59466438 59466459 -129813095 + (A)n Simple_repeat Simple_repeat 1 21 0 43368 32 21 1 chr6 59466464 59472441 -129807113 + L1PA2 LINE L1 52 6152 -3 341 297 43 10 chr6 59472443 59472661 -129806893 + L1MEd LINE L1 1294 1613 -877 226 373 85 0 chr6 59472775 59472893 -129806661 + L2 LINE L2 2934 3061 -252 712 192 165 86 chr6 59473320 59473726 -129805828 - Charlie5 DNA MER1_type 0 2624 2187 * 1111 190 97 34 chr6 59473725 59473994 -129805560 - Charlie5 DNA MER1_type -2326 286 1 531 282 92 73 chr6 59474047 59474458 -129805096 + MLT1L LTR MaLR 197 615 0 344 264 62 2 chr6 59475307 59475455 -129804099 - L1ME4a LINE L1 -3 6050 1193 425 324 103 74 chr6 59477292 59478076 -129801478 + L2 LINE L2 2446 3272 0 208 130 43 0 chr6 59478128 59478174 -129801380 + CT-rich Low_complexity Low_complexity 2 49 0 7520 225 44 50 chr6 59478254 59481481 -129798073 + L1M4b LINE L1 1 3199 -3758 1020 112 0 0 chr6 59481481 59481615 -129797939 - L1PA13 LINE L1 -11 6152 6019 7520 225 44 50 chr6 59481615 59482030 -129797524 + L1M4b LINE L1 3199 3615 -3342 328 313 20 0 chr6 59483974 59484121 -129795433 + L2 LINE L2 1759 1908 -1406 336 80 0 0 chr6 59484765 59484815 -129794739 - AluSp SINE Alu -1 302 253 2263 83 4 0 chr6 59484815 59485092 -129794462 - AluSp SINE Alu -35 278 1 216 147 0 0 chr6 59486375 59486409 -129793145 + MIR SINE MIR 219 252 -10 396 241 20 110 chr6 59486994 59487170 -129792384 + MIR SINE MIR 34 191 -47 3031 63 16 11 chr6 59487751 59488129 -129791425 + L1PA10 LINE L1 5789 6168 0 185 257 0 57 chr6 59488889 59488959 -129790595 - L2 LINE L2 -13 3300 3235 1159 283 56 37 chr6 59488959 59489453 -129790101 + L1MC4a LINE L1 5336 5829 -1979 2358 91 0 3 chr6 59489487 59489795 -129789759 + AluSc SINE Alu 1 307 -2 381 188 0 59 chr6 59489803 59489904 -129789650 - L1MA9 LINE L1 -38 6274 6180 5058 94 9 0 chr6 59489955 59490624 -129788930 - L1PB1 LINE L1 -1 6150 5476 10292 191 25 3 chr6 59490630 59492979 -129786575 - L1P5 LINE L1 -618 5533 3133 441 279 65 68 chr6 59492972 59493294 -129786260 + L1MC4a LINE L1 5851 6171 -1637 * 315 0 0 0 chr6 59493913 59493948 -129785606 + (CA)n Simple_repeat Simple_repeat 1 35 0 338 279 70 44 chr6 59494623 59494781 -129784773 + MER117 DNA MER1_type 36 197 0 301 289 97 18 chr6 59494787 59494901 -129784653 - MIR SINE MIR -70 138 16 193 276 172 30 chr6 59496389 59496523 -129783031 - L2 LINE L2 -410 2904 2752 198 246 145 0 chr6 59496943 59497012 -129782542 - MIR SINE MIR -111 151 73 487 311 123 18 chr6 59497224 59497452 -129782102 + L2 LINE L2 3032 3283 -30 983 195 51 19 chr6 59497726 59497941 -129781613 - MIR SINE MIR -17 245 24 1728 264 69 37 chr6 59497962 59498500 -129781054 + MLT1H1 LTR MaLR 1 555 0 24 53 0 0 chr6 59499019 59499057 -129780497 + AT_rich Low_complexity Low_complexity 1 38 0 861 252 128 16 chr6 59499173 59499494 -129780060 + LTR16A LTR ERVL 30 386 -64 225 0 0 0 chr6 59499897 59499922 -129779632 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 494 240 89 0 chr6 59499939 59500085 -129779469 + MER112 DNA MER1_type 87 245 -15 430 330 130 54 chr6 59500273 59500588 -129778966 + L2 LINE L2 2926 3264 -8 739 257 116 82 chr6 59502879 59503451 -129776103 + MLT1G1 LTR MaLR 1 551 -4 579 313 80 43 chr6 59503464 59503937 -129775617 + MLT1G1-int LTR MaLR 3 605 -766 528 198 24 156 chr6 59505125 59505292 -129774262 - MIR3 SINE MIR -10 198 54 266 115 39 0 chr6 59505309 59505361 -129774193 - L2 LINE L2 0 3272 3219 225 209 0 0 chr6 59507511 59507554 -129772000 + MER103 DNA DNA 2 44 -122 285 252 9 104 chr6 59508263 59508378 -129771176 - MIR SINE MIR -3 259 156 269 250 0 79 chr6 59509901 59509977 -129769577 - MER5A DNA MER1_type -3 186 117 994 209 43 19 chr6 59510404 59510615 -129768939 - MER58A DNA MER1_type -8 216 1 31 0 0 0 chr6 59510625 59510656 -129768898 + AT_rich Low_complexity Low_complexity 1 31 0 393 355 84 52 chr6 59510977 59511324 -129768230 - L2 LINE L2 -1 3271 2914 315 301 0 18 chr6 59511430 59511543 -129768011 + LTR33 LTR ERVL 391 501 -20 664 281 47 10 chr6 59512451 59512643 -129766911 + MIR SINE MIR 63 261 -1 1160 163 37 19 chr6 59512850 59513065 -129766489 + L1PA11 LINE L1 10 228 -7353 24133 157 11 17 chr6 59513067 59518442 -129761112 + L1PA11 LINE L1 1480 7612 0 533 147 10 88 chr6 59518445 59518547 -129761007 + MER21B LTR ERV1 13 106 -757 * 1784 226 47 32 chr6 59518545 59519250 -129760304 + MER21B LTR ERV1 19 811 -52 207 0 0 0 chr6 59519518 59519541 -129760013 + (TTTCC)n Simple_repeat Simple_repeat 1 23 0 819 64 0 0 chr6 59519541 59519651 -129759903 + (TTCC)n Simple_repeat Simple_repeat 1 110 0 319 169 13 13 chr6 59519760 59519837 -129759717 + CT-rich Low_complexity Low_complexity 4 80 0 295 198 0 31 chr6 59519831 59519927 -129759627 + C-rich Low_complexity Low_complexity 1 93 0 * 209 229 0 21 chr6 59519929 59519977 -129759577 + T-rich Low_complexity Low_complexity 3 49 0 16397 128 17 30 chr6 59520146 59521984 -129757570 + L1P LINE L1 11 1807 -4339 2354 97 3 0 chr6 59521984 59522294 -129757260 - AluY SINE Alu 0 311 1 16397 128 17 30 chr6 59522294 59523110 -129756444 + L1P LINE L1 1807 2632 -3514 7435 61 4 8 chr6 59523111 59524014 -129755540 + L1PA6 LINE L1 5255 6154 0 506 261 69 48 chr6 59524805 59525027 -129754527 - MIR SINE MIR -27 235 14 1301 236 202 14 chr6 59525309 59525750 -129753804 + MER69 DNA AcHobo 12 535 -691 1328 175 106 47 chr6 59525756 59526116 -129753438 + MER69 DNA AcHobo 2146 2526 0 262 271 104 35 chr6 59527708 59527852 -129751702 + L1MC/D LINE L1 5746 5899 -1909 1229 169 77 0 chr6 59527856 59528063 -129751491 + MER46A DNA MER2_type 14 236 0 207 164 55 73 chr6 59528088 59528143 -129751411 + L2 LINE L2 3219 3272 0 305 177 57 28 chr6 59528225 59528366 -129751188 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 37 69 0 0 chr6 59528372 59528444 -129751110 + AT_rich Low_complexity Low_complexity 1 72 0 252 0 0 0 chr6 59531606 59531634 -129747920 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2121 115 3 10 chr6 59531641 59531955 -129747599 + AluSq SINE Alu 1 312 -1 732 195 43 22 chr6 59532096 59532281 -129747273 - MER53 DNA DNA 0 189 1 605 314 46 41 chr6 59533758 59534146 -129745408 + L2 LINE L2 102 491 -2823 233 301 81 24 chr6 59534286 59534409 -129745145 + L2 LINE L2 631 760 -2554 503 330 119 58 chr6 59534421 59535549 -129744005 + L2 LINE L2 1802 3038 -234 468 0 0 0 chr6 59535549 59535601 -129743953 + (TA)n Simple_repeat Simple_repeat 2 53 0 503 330 119 58 chr6 59535601 59535852 -129743702 + L2 LINE L2 3038 3272 0 219 36 0 0 chr6 59536026 59536054 -129743500 + (TG)n Simple_repeat Simple_repeat 1 28 0 315 113 0 0 chr6 59536056 59536109 -129743445 + (GA)n Simple_repeat Simple_repeat 2 54 0 1401 261 45 24 chr6 59536354 59536776 -129742778 + LTR16A LTR ERVL 16 446 -4 894 206 0 9 chr6 59537050 59537255 -129742299 - AluJb SINE Alu -16 296 3 1749 98 5 0 chr6 59537376 59537600 -129741954 + AluSq SINE Alu 1 225 -88 738 105 0 0 chr6 59537600 59537753 -129741801 + AluSg/x SINE Alu 188 340 0 5356 141 19 24 chr6 59539737 59540659 -129738895 - L1MA7 LINE L1 0 6291 5374 2761 193 42 40 chr6 59540648 59541408 -129738146 + L1 LINE L1 4511 5330 -816 * 2403 79 0 3 chr6 59541408 59541700 -129737854 + AluY SINE Alu 1 291 -20 2761 193 42 40 chr6 59541700 59541742 -129737812 + L1 LINE L1 5330 5370 -776 197 391 35 9 chr6 59541744 59541859 -129737695 + L2 LINE L2 2939 3056 -216 227 250 146 0 chr6 59544128 59544224 -129735330 + MIR SINE MIR 132 241 -21 239 196 0 18 chr6 59544253 59544309 -129735245 + L2 LINE L2 3257 3311 -2 213 94 0 0 chr6 59544310 59544342 -129735212 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 45080 38 0 9 chr6 59544922 59551134 -129728420 + L1PA3 LINE L1 1 6155 0 2264 102 0 3 chr6 59551252 59551546 -129728008 - AluSg SINE Alu -17 293 1 394 291 158 42 chr6 59553416 59553777 -129725777 - L2 LINE L2 0 3313 2911 454 185 12 0 chr6 59553810 59553891 -129725663 + MER20 DNA MER1_type 135 216 -3 579 303 8 75 chr6 59553892 59554146 -129725408 - L2 LINE L2 -403 2911 2675 198 252 53 5 chr6 59554733 59554807 -129724747 - MIR SINE MIR -116 92 15 25 0 0 0 chr6 59556150 59556175 -129723379 + AT_rich Low_complexity Low_complexity 1 25 0 225 312 152 41 chr6 59557872 59558379 -129721175 + L2 LINE L2 1146 1708 -1606 2136 139 0 0 chr6 59558447 59558748 -129720806 + AluSx SINE Alu 1 301 -11 298 291 99 28 chr6 59559557 59559770 -129719784 - L1ME4a LINE L1 -155 5966 5739 811 252 29 10 chr6 59561221 59561427 -129718127 - MIR SINE MIR 0 262 53 205 171 0 24 chr6 59561850 59561891 -129717663 + GA-rich Low_complexity Low_complexity 4 43 0 1791 98 8 0 chr6 59562830 59563076 -129716478 - L1MA4 LINE L1 -477 5823 5576 2916 139 17 11 chr6 59563076 59563540 -129716014 + L1MA4 LINE L1 5823 6291 -9 185 272 74 25 chr6 59563686 59563767 -129715787 + MIR SINE MIR 76 160 -102 334 262 191 14 chr6 59563849 59563990 -129715564 + MER5A DNA MER1_type 24 189 0 373 344 60 6 chr6 59564273 59564456 -129715098 - MIR SINE MIR -50 212 20 2281 117 0 3 chr6 59567574 59567881 -129711673 + AluSx SINE Alu 1 306 -6 207 242 0 0 chr6 59568949 59569011 -129710543 + (TA)n Simple_repeat Simple_repeat 1 62 0 30 45 0 0 chr6 59569739 59569783 -129709771 + AT_rich Low_complexity Low_complexity 1 44 0 33 43 0 0 chr6 59569966 59570013 -129709541 + AT_rich Low_complexity Low_complexity 1 47 0 183 288 175 12 chr6 59571586 59571666 -129707888 - L2 LINE L2 -3 3310 3218 500 138 9 92 chr6 59571855 59571964 -129707590 + MER53 DNA DNA 90 189 0 262 211 39 0 chr6 59572328 59572380 -129707174 + MIR SINE MIR 96 149 -59 1650 122 0 25 chr6 59573261 59573499 -129706055 - AluSx SINE Alu -18 294 63 246 340 27 27 chr6 59673672 59673819 -129605735 + L1ME3A LINE L1 6009 6155 -15 299 296 85 82 chr6 59673833 59674103 -129605451 + L3 LINE CR1 453 723 -854 622 231 154 0 chr6 59674110 59674266 -129605288 - MER5A DNA MER1_type 0 189 10 207 339 0 0 chr6 59674275 59674331 -129605223 + MIR3 SINE MIR 153 208 0 365 290 231 12 chr6 59674850 59675019 -129604535 - MIR SINE MIR -13 249 44 440 248 0 20 chr6 59678758 59678859 -129600695 + MER58A DNA MER1_type 3 101 -6 525 312 88 14 chr6 59679754 59679969 -129599585 - MIR SINE MIR -1 261 31 272 364 45 15 chr6 59679984 59680116 -129599438 + L2 LINE L2 3137 3272 0 1728 191 22 11 chr6 59681770 59682131 -129597423 + MLT1A1 LTR MaLR 1 365 0 180 0 0 0 chr6 59682221 59682241 -129597313 + (A)n Simple_repeat Simple_repeat 1 20 0 183 241 63 38 chr6 59683165 59683244 -129596310 + L3b LINE CR1 1309 1389 -194 1244 138 37 32 chr6 59683300 59683518 -129596036 + MER20 DNA MER1_type 1 219 0 458 215 96 22 chr6 59684712 59684847 -129594707 + MIR SINE MIR 81 225 -37 318 385 74 0 chr6 59686162 59686297 -129593257 + L2 LINE L2 3126 3270 -2 483 331 14 7 chr6 59688241 59688389 -129591165 - MER5B DNA MER1_type -1 177 29 21 0 0 0 chr6 59688908 59688929 -129590625 + AT_rich Low_complexity Low_complexity 1 21 0 268 213 0 16 chr6 59689179 59689240 -129590314 - MIR SINE MIR -133 129 70 657 122 183 49 chr6 59691103 59691267 -129588287 - MER53 DNA DNA -3 186 1 243 79 0 0 chr6 59691373 59691411 -129588143 + (T)n Simple_repeat Simple_repeat 1 38 0 568 288 12 6 chr6 59692231 59692401 -129587153 + MER5B DNA MER1_type 4 174 -4 742 191 145 0 chr6 59692403 59692555 -129586999 - MER5A DNA MER1_type -15 174 1 22 0 0 0 chr6 59692758 59692780 -129586774 + AT_rich Low_complexity Low_complexity 1 22 0 235 309 0 0 chr6 59693260 59693315 -129586239 - MIR SINE MIR -7 255 201 466 210 40 0 chr6 59693324 59693424 -129586130 + MER5A DNA MER1_type 9 112 -77 218 212 273 30 chr6 59693351 59693450 -129586104 - MER5A DNA MER1_type -24 165 43 * 1968 99 4 4 chr6 59693560 59693832 -129585722 + AluSc SINE Alu 1 272 -37 216 0 0 0 chr6 59693836 59693860 -129585694 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 481 334 113 47 chr6 59693966 59694373 -129585181 + L2 LINE L2 2836 3269 -3 1755 175 10 3 chr6 59694678 59694975 -129584579 - AluJb SINE Alu -12 300 2 486 263 154 6 chr6 59695734 59695890 -129583664 - MER5A DNA MER1_type -7 182 4 423 288 12 82 chr6 59697049 59697219 -129582335 - MIR3 SINE MIR -7 201 44 505 342 46 25 chr6 59697690 59697930 -129581624 + MIR SINE MIR 3 247 -15 276 91 45 0 chr6 59700301 59700345 -129579209 - Alu SINE Alu -4 298 253 297 403 0 8 chr6 59700348 59700467 -129579087 + L2 LINE L2 3154 3271 -1 203 130 0 22 chr6 59702007 59702053 -129577501 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 204 244 16 65 chr6 59702878 59703001 -129576553 + (CACCC)n Simple_repeat Simple_repeat 5 121 0 30 27 0 0 chr6 59703065 59703102 -129576452 + GC_rich Low_complexity Low_complexity 1 37 0 209 250 0 0 chr6 59703342 59703386 -129576168 + G-rich Low_complexity Low_complexity 1 44 0 198 103 0 0 chr6 59703862 59703891 -129575663 + (TG)n Simple_repeat Simple_repeat 2 30 0 345 24 0 0 chr6 59704316 59704358 -129575196 + (TG)n Simple_repeat Simple_repeat 2 43 0 387 367 114 13 chr6 59704733 59704970 -129574584 - L3 LINE CR1 -15 1562 1302 295 372 26 0 chr6 59705213 59705326 -129574228 - MIR SINE MIR -65 143 28 260 216 95 0 chr6 59705633 59705707 -129573847 + L1ME4a LINE L1 5955 6035 -86 5101 171 69 75 chr6 59705731 59706324 -129573230 - L1MC3 LINE L1 -20 7765 7169 306 196 0 0 chr6 59706324 59706375 -129573179 - MLT1F1 LTR MaLR -465 102 52 5101 171 69 75 chr6 59706375 59707055 -129572499 - L1MC3 LINE L1 -616 7169 6451 36 62 0 0 chr6 59707063 59707127 -129572427 + AT_rich Low_complexity Low_complexity 1 64 0 240 371 48 0 chr6 59707493 59707617 -129571937 + MIR3 SINE MIR 4 133 -75 342 304 97 64 chr6 59707715 59708117 -129571437 - MLT1J2 LTR MaLR -15 435 15 1007 243 169 21 chr6 59708423 59708843 -129570711 - MLT1L LTR MaLR -42 573 92 252 0 0 0 chr6 59708867 59708895 -129570659 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 24 100 0 0 chr6 59709130 59709210 -129570344 + AT_rich Low_complexity Low_complexity 1 80 0 8479 178 45 91 chr6 59709777 59712305 -129567249 - Tigger1 DNA MER2_type -6 2412 1 246 246 0 16 chr6 59712845 59712906 -129566648 + CT-rich Low_complexity Low_complexity 1 60 0 2483 46 3 3 chr6 59713038 59713341 -129566213 + AluY SINE Alu 1 303 -8 704 228 38 0 chr6 59713830 59713988 -129565566 - MER97a DNA MER1_type? -715 179 16 261 0 0 0 chr6 59714172 59714201 -129565353 + (T)n Simple_repeat Simple_repeat 1 29 0 680 251 29 48 chr6 59715545 59715752 -129563802 + MIR SINE MIR 2 204 -58 26 30 0 0 chr6 59715784 59715817 -129563737 + AT_rich Low_complexity Low_complexity 1 33 0 228 331 69 23 chr6 59716013 59716143 -129563411 - MIR SINE MIR -16 246 111 305 306 29 46 chr6 59716717 59716890 -129562664 - HAL1 LINE L1 -36 2471 2302 27 29 0 0 chr6 59717041 59717075 -129562479 + AT_rich Low_complexity Low_complexity 1 34 0 180 163 0 0 chr6 59717329 59717372 -129562182 + (TA)n Simple_repeat Simple_repeat 1 43 0 894 114 64 121 chr6 59717386 59717650 -129561904 - Cheshire DNA MER1_type -1 2419 2171 1998 247 72 34 chr6 59717651 59718246 -129561308 + MLT1E2 LTR MaLR 1 618 -8 2441 194 40 65 chr6 59718260 59718923 -129560631 - Cheshire DNA MER1_type -247 2173 1528 2013 119 3 35 chr6 59718923 59719235 -129560319 - AluSx SINE Alu 0 312 11 2441 194 40 65 chr6 59719235 59719294 -129560260 - Cheshire DNA MER1_type -892 1528 1469 5483 228 42 8 chr6 59719305 59720620 -129558934 - Cheshire DNA MER1_type -1060 1360 1 25 31 0 0 chr6 59721148 59721180 -129558374 + AT_rich Low_complexity Low_complexity 1 32 0 574 310 75 5 chr6 59721685 59721885 -129557669 - MIR SINE MIR -1 261 48 21 36 0 0 chr6 59722171 59722199 -129557355 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr6 59722232 59722267 -129557287 + AT_rich Low_complexity Low_complexity 1 35 0 2065 131 0 7 chr6 59722963 59723268 -129556286 + AluSq SINE Alu 1 303 -10 195 286 57 76 chr6 59724583 59724688 -129554866 - MIR SINE MIR -27 235 133 22 56 0 0 chr6 59725183 59725219 -129554335 + AT_rich Low_complexity Low_complexity 1 36 0 188 43 64 21 chr6 59725468 59725515 -129554039 + (TAA)n Simple_repeat Simple_repeat 1 49 0 443 221 255 0 chr6 59725541 59725690 -129553864 + MER5A DNA MER1_type 2 188 -1 355 272 141 0 chr6 59725683 59725775 -129553779 + MER5A DNA MER1_type 1 105 -84 * 243 88 0 0 chr6 59725807 59725841 -129553713 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 2021 125 7 13 chr6 59725841 59726144 -129553410 - AluSx SINE Alu -4 308 8 393 75 0 0 chr6 59726180 59726233 -129553321 + (CA)n Simple_repeat Simple_repeat 2 54 0 535 235 8 17 chr6 59727389 59727508 -129552046 - MIR3 SINE MIR 0 208 91 21 71 0 0 chr6 59727572 59727614 -129551940 + AT_rich Low_complexity Low_complexity 1 42 0 790 257 17 59 chr6 59729024 59729386 -129550168 + L1ME1 LINE L1 5814 6310 -24 2207 92 3 22 chr6 59729603 59729919 -129549635 + AluY SINE Alu 1 310 -1 213 343 128 0 chr6 59730198 59730300 -129549254 - L2 LINE L2 -45 3268 3154 21 0 0 0 chr6 59730307 59730328 -129549226 + AT_rich Low_complexity Low_complexity 1 21 0 2265 109 0 0 chr6 59730536 59730840 -129548714 + AluSx SINE Alu 6 309 -3 28 86 0 0 chr6 59731396 59731466 -129548088 + AT_rich Low_complexity Low_complexity 1 70 0 258 362 135 6 chr6 59731504 59731667 -129547887 - MIR SINE MIR -30 232 49 2205 127 0 0 chr6 59732529 59732837 -129546717 - AluSx SINE Alu -1 311 4 27 81 0 0 chr6 59735139 59735201 -129544353 + AT_rich Low_complexity Low_complexity 1 62 0 227 217 0 0 chr6 59735247 59735293 -129544261 + A-rich Low_complexity Low_complexity 1 46 0 461 327 43 43 chr6 59735294 59735670 -129543884 + L1M4 LINE L1 2192 2567 -3579 21 0 0 0 chr6 59735828 59735849 -129543705 + AT_rich Low_complexity Low_complexity 1 21 0 43576 42 3 1 chr6 59736677 59742818 -129536736 + L1PA4 LINE L1 1 6155 0 281 265 56 56 chr6 59743009 59743330 -129536224 + L1M4 LINE L1 3175 3495 -2651 3639 180 35 75 chr6 59743648 59744834 -129534720 + L1MA9 LINE L1 5014 6168 -144 339 25 0 0 chr6 59744834 59744874 -129534680 + (CA)n Simple_repeat Simple_repeat 1 40 0 3639 180 35 75 chr6 59744874 59744898 -129534656 + L1MA9 LINE L1 6168 6191 -121 273 29 0 0 chr6 59744980 59745014 -129534540 + (TA)n Simple_repeat Simple_repeat 1 34 0 901 246 134 54 chr6 59745177 59745564 -129533990 + LTR33 LTR ERVL 14 431 -90 186 345 0 0 chr6 59746879 59746934 -129532620 + L3 LINE CR1 40 94 -1483 24 32 0 0 chr6 59748635 59748666 -129530888 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr6 59748700 59748727 -129530827 + AT_rich Low_complexity Low_complexity 1 27 0 253 328 260 0 chr6 59748875 59749079 -129530475 + MIR SINE MIR 5 261 -1 526 172 0 11 chr6 59749225 59749318 -129530236 + MLT1A1 LTR MaLR 1 92 -273 2306 119 0 0 chr6 59749687 59749997 -129529557 - AluSx SINE Alu -2 310 1 236 348 0 18 chr6 59750512 59750624 -129528930 - MIR SINE MIR -56 206 97 22 0 0 0 chr6 59751217 59751239 -129528315 + AT_rich Low_complexity Low_complexity 1 22 0 675 283 104 18 chr6 59751307 59751673 -129527881 - LTR16A LTR ERVL 0 450 59 899 277 20 8 chr6 59752270 59752519 -129527035 + MIR SINE MIR 1 252 -10 206 364 35 7 chr6 59752614 59752806 -129526748 - MIR SINE MIR -49 213 13 1060 180 127 42 chr6 59754293 59754577 -129524977 + MLT1A1 LTR MaLR 58 365 0 334 323 68 56 chr6 59754836 59755087 -129524467 - L3 LINE CR1 -192 1385 1132 376 283 88 0 chr6 59755235 59755348 -129524206 - MIR SINE MIR -82 180 58 470 315 82 43 chr6 59755704 59755961 -129523593 - L3 LINE CR1 -694 883 617 3514 142 25 15 chr6 59756016 59756515 -129523039 - L1PA15 LINE L1 -321 5844 5338 1781 127 25 81 chr6 59756515 59756641 -129522913 + AluSx SINE Alu 1 132 -180 225 0 0 0 chr6 59756641 59756666 -129522888 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1781 127 25 81 chr6 59756666 59756861 -129522693 + AluSx SINE Alu 132 304 -8 3514 142 25 15 chr6 59756861 59757247 -129522307 - L1PA15 LINE L1 -827 5338 4957 1823 145 0 22 chr6 59757247 59757561 -129521993 + L1PA15 LINE L1 5849 6165 0 242 395 43 0 chr6 59757716 59757878 -129521676 - MIR SINE MIR -81 181 13 192 26 53 26 chr6 59758272 59758310 -129521244 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2303 95 0 0 chr6 59758426 59758730 -129520824 - AluY SINE Alu -7 304 1 207 100 0 0 chr6 59759262 59759292 -129520262 + (A)n Simple_repeat Simple_repeat 1 30 0 266 344 52 0 chr6 59759920 59760016 -129519538 - MIR SINE MIR -76 132 32 296 233 0 0 chr6 59760134 59760194 -129519360 - MIR SINE MIR -105 157 98 434 289 12 64 chr6 59760731 59760904 -129518650 - MIR SINE MIR -2 260 97 217 246 0 0 chr6 59761224 59761281 -129518273 + T-rich Low_complexity Low_complexity 1 57 0 199 310 46 23 chr6 59761364 59761451 -129518103 - L2 LINE L2 -1 3312 3224 192 319 0 0 chr6 59761738 59761785 -129517769 - MIR SINE MIR -90 118 72 288 269 21 21 chr6 59761974 59762067 -129517487 + MIR SINE MIR 109 201 -61 217 341 85 62 chr6 59762421 59762550 -129517004 - L2 LINE L2 -81 3191 3060 861 178 22 109 chr6 59764214 59764444 -129515110 - MER6B DNA MER2_type 0 210 1 2577 201 32 87 chr6 59764450 59764848 -129514706 - L1MA10 LINE L1 -17 6157 5739 450 65 0 0 chr6 59764848 59764910 -129514644 + (TA)n Simple_repeat Simple_repeat 1 62 0 2577 201 32 87 chr6 59764910 59765006 -129514548 - L1MA10 LINE L1 -435 5739 5639 257 0 30 0 chr6 59765006 59765039 -129514515 + (TA)n Simple_repeat Simple_repeat 2 35 0 2577 201 32 87 chr6 59765039 59766019 -129513535 - L1MA10 LINE L1 -535 5639 4862 1101 188 26 146 chr6 59766021 59766446 -129513108 - MLT1A2 LTR MaLR 0 374 1 22 0 0 0 chr6 59766646 59766668 -129512886 + AT_rich Low_complexity Low_complexity 1 22 0 281 336 20 40 chr6 59766717 59766866 -129512688 - L2 LINE L2 -188 3084 2939 819 354 63 17 chr6 59766900 59767491 -129512063 - L2 LINE L2 -467 2847 2230 1579 190 14 7 chr6 59769108 59769403 -129510151 - AluJo SINE Alu -15 297 1 1856 226 73 27 chr6 59769645 59770162 -129509392 - MLT1F LTR MaLR 0 542 2 186 43 0 0 chr6 59771069 59771092 -129508462 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 244 290 21 65 chr6 59771376 59771562 -129507992 + L1M4c LINE L1 1326 1503 -4881 2397 143 40 12 chr6 59771606 59772027 -129507527 - L1PA16 LINE L1 -10 6156 5724 1516 234 43 5 chr6 59773579 59773955 -129505599 - MLT1B LTR MaLR 0 390 1 2386 75 0 7 chr6 59774966 59775261 -129504293 - AluY SINE Alu -18 293 1 495 262 138 24 chr6 59775285 59775495 -129504059 + MER106A DNA MER1_type 1 234 -2 1232 211 91 4 chr6 59777046 59777321 -129502233 + AluJo SINE Alu 1 299 -13 380 331 25 8 chr6 59777420 59777541 -129502013 + L2 LINE L2 3188 3310 -3 195 162 0 0 chr6 59777591 59777628 -129501926 + (TA)n Simple_repeat Simple_repeat 1 37 0 266 264 50 57 chr6 59777853 59777993 -129501561 - HAL1 LINE L1 0 2507 2369 285 254 0 0 chr6 59778122 59778181 -129501373 + L2 LINE L2 3246 3304 -9 252 318 75 9 chr6 59779828 59779935 -129499619 + MIR3 SINE MIR 74 187 -21 180 0 0 0 chr6 59781654 59781674 -129497880 + (A)n Simple_repeat Simple_repeat 1 20 0 187 283 115 106 chr6 59782042 59782155 -129497399 - MIR SINE MIR -65 143 30 189 116 23 116 chr6 59782202 59782245 -129497309 - L2 LINE L2 -76 3237 3199 464 284 75 50 chr6 59782287 59782488 -129497066 + MIR SINE MIR 45 250 -12 392 303 0 32 chr6 59783337 59783522 -129496032 + (CCA)n Simple_repeat Simple_repeat 2 180 0 29 28 0 0 chr6 59784664 59784700 -129494854 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr6 59784712 59784754 -129494800 + AT_rich Low_complexity Low_complexity 1 42 0 1111 276 36 29 chr6 59784939 59785360 -129494194 + L1PA12 LINE L1 1672 2095 -5486 1244 276 38 0 chr6 59785368 59785738 -129493816 + L1PA12 LINE L1 2147 2530 -5051 3150 225 8 9 chr6 59785764 59786503 -129493051 + L1PA12 LINE L1 2676 3413 -4171 5099 45 5 2 chr6 59786503 59787528 -129492026 + MER11A LTR ERVK 1 1266 0 12470 227 21 23 chr6 59787528 59790831 -129488723 + L1PA12 LINE L1 3409 6705 -879 2744 205 10 0 chr6 59790832 59791319 -129488235 - L1PA15-16 LINE L1 -6026 823 332 274 125 0 0 chr6 59791316 59791356 -129488198 - L1MEc LINE L1 -3440 3517 3478 * 299 247 111 53 chr6 59791365 59791555 -129487999 - L1MEc LINE L1 -4314 2824 2624 1550 284 60 19 chr6 59791768 59793288 -129486266 - L1MEc LINE L1 -4564 2395 635 813 206 22 28 chr6 59793347 59793527 -129486027 + MSTD LTR MaLR 218 396 0 949 227 42 25 chr6 59793886 59794130 -129485424 - L1MC3 LINE L1 -916 6919 6656 364 149 35 9 chr6 59795773 59795887 -129483667 + (TA)n Simple_repeat Simple_repeat 2 118 0 388 304 54 20 chr6 59797376 59797524 -129482030 + MIR SINE MIR 91 243 -19 331 165 0 21 chr6 59797665 59797740 -129481814 + MLT1A1 LTR MaLR 1 59 -306 1236 191 4 40 chr6 59797776 59798049 -129481505 + MLT1A1 LTR MaLR 62 324 -41 338 189 142 28 chr6 59798096 59798202 -129481352 + MIR SINE MIR 95 212 -50 1928 188 32 36 chr6 59800340 59800892 -129478662 - MLT2A2 LTR ERVL 0 554 1 2045 230 35 23 chr6 59801807 59802324 -129477230 + L1MD1 LINE L1 18 540 -6000 1444 214 86 0 chr6 59802370 59802674 -129476880 + Ricksha DNA DNA 1 330 -1716 * 1495 154 42 0 chr6 59802672 59802931 -129476623 + Ricksha DNA DNA 231 500 -2746 10952 147 31 45 chr6 59802935 59805020 -129474534 + Ricksha DNA DNA 1190 3245 -1 469 268 10 0 chr6 59805033 59805130 -129474424 + L1MD1 LINE L1 632 729 -5811 725 226 72 38 chr6 59805157 59805475 -129474079 + L1MD1 LINE L1 1195 1523 -5017 3665 193 35 16 chr6 59805475 59806270 -129473284 + L1MD1 LINE L1 5814 6623 -13 4672 220 106 8 chr6 59806597 59807922 -129471632 + Charlie1a DNA MER1_type 2 1455 0 846 263 78 55 chr6 59808207 59808822 -129470732 - L1MC5 LINE L1 -71 7890 7262 896 254 44 119 chr6 59808935 59809714 -129469840 - L1MC5 LINE L1 -733 7228 6480 2239 143 8 3 chr6 59809770 59810134 -129469420 - MER47A DNA MER2_type 0 366 1 356 103 17 0 chr6 59810134 59810192 -129469362 - L1 LINE L1 -1406 4740 4682 21 36 0 0 chr6 59811374 59811402 -129468152 + AT_rich Low_complexity Low_complexity 1 28 0 3097 192 71 1 chr6 59811992 59812665 -129466889 + Tigger6a DNA MER2_type 1 720 -363 1719 230 129 34 chr6 59812672 59813324 -129466230 - L1MC4 LINE L1 -126 7916 7203 219 125 0 0 chr6 59813346 59813386 -129466168 + (TTTTTG)n Simple_repeat Simple_repeat 6 45 0 3668 150 38 9 chr6 59813408 59814088 -129465466 + L1MC1 LINE L1 5634 6333 0 1820 320 89 26 chr6 59814496 59815336 -129464218 + L1M4b LINE L1 55 947 -5912 3876 180 24 38 chr6 59815727 59816743 -129462811 + L1MB8 LINE L1 5183 6176 -2 304 264 64 96 chr6 59816761 59817041 -129462513 - L1M4 LINE L1 -3241 2905 2635 181 264 0 57 chr6 59817044 59817097 -129462457 - MER5B DNA MER1_type -41 137 88 31 0 0 0 chr6 59817828 59817859 -129461695 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr6 59820429 59820457 -129459097 + AT_rich Low_complexity Low_complexity 1 28 0 968 193 88 60 chr6 59820466 59820818 -129458736 - LTR37A LTR ERV1 -14 412 51 27 0 0 0 chr6 59820965 59820992 -129458562 + AT_rich Low_complexity Low_complexity 1 27 0 564 222 23 51 chr6 59820993 59821169 -129458385 + MER76 LTR ERV 90 260 -428 519 296 35 12 chr6 59821175 59821344 -129458210 + MER76 LTR ERV 516 688 0 2165 114 0 3 chr6 59821630 59821937 -129457617 + AluSq SINE Alu 1 306 -7 237 310 0 14 chr6 59822556 59822627 -129456927 - MLT1I LTR MaLR -8 401 332 335 190 13 25 chr6 59822684 59822763 -129456791 + L1MC4a LINE L1 6338 6415 -1393 * 2617 208 26 130 chr6 59822760 59823441 -129456113 + L1MC3 LINE L1 6379 6960 -848 347 73 0 18 chr6 59823441 59823496 -129456058 + MADE1 DNA Mariner 1 54 -26 2617 208 26 130 chr6 59823496 59823881 -129455673 + L1MC3 LINE L1 6960 7383 -425 26 0 0 0 chr6 59824043 59824069 -129455485 + AT_rich Low_complexity Low_complexity 1 26 0 307 349 94 17 chr6 59824138 59824436 -129455118 - L1M4 LINE L1 -3136 3010 2690 241 218 46 81 chr6 59824666 59824753 -129454801 - MIR SINE MIR -13 249 166 2754 225 33 11 chr6 59826709 59827348 -129452206 + MER82 DNA MER2_type 1 653 0 225 154 0 0 chr6 59827756 59827795 -129451759 + CT-rich Low_complexity Low_complexity 3 41 0 2444 50 3 3 chr6 59829578 59829879 -129449675 + AluY SINE Alu 1 301 -10 407 362 101 41 chr6 59829889 59830276 -129449278 - L3 LINE CR1 -87 1490 1081 2296 71 0 3 chr6 59831174 59831471 -129448083 + AluY SINE Alu 1 296 -15 602 257 95 24 chr6 59832503 59832841 -129446713 - L1M4 LINE L1 -762 5384 5023 236 163 0 0 chr6 59832894 59832937 -129446617 - MLT1H LTR MaLR -2 547 505 300 27 0 0 chr6 59832950 59832987 -129446567 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 728 203 0 0 chr6 59832987 59833105 -129446449 - AluSq SINE Alu -62 251 134 298 122 43 26 chr6 59833192 59833307 -129446247 + (TA)n Simple_repeat Simple_repeat 2 118 0 264 60 0 140 chr6 59833330 59833380 -129446174 - MLT2A2 LTR ERVL -12 441 399 303 123 57 41 chr6 59833388 59833510 -129446044 + (TA)n Simple_repeat Simple_repeat 2 125 0 422 71 50 66 chr6 59833542 59833724 -129445830 + (TA)n Simple_repeat Simple_repeat 2 180 0 385 41 0 0 chr6 59833728 59833780 -129445774 + MLT2A2 LTR ERVL 346 453 0 316 307 56 91 chr6 59833819 59834050 -129445504 - MLT1H LTR MaLR -246 303 81 340 111 4 11 chr6 59834065 59834129 -129445425 - L1M4 LINE L1 -1200 4946 4885 329 154 0 0 chr6 59834345 59834397 -129445157 + MER67D LTR ERV1 1 52 -462 546 254 64 78 chr6 59834436 59834719 -129444835 - L1M4 LINE L1 -2797 3349 3071 743 184 7 0 chr6 59835807 59835943 -129443611 + MER67D LTR ERV1 1 137 -377 7268 99 10 20 chr6 59835943 59837010 -129442544 + MER11C LTR ERVK 1 1057 -14 1590 182 98 5 chr6 59837050 59837418 -129442136 + MER67D LTR ERV1 129 510 -4 595 243 86 95 chr6 59838283 59838506 -129441048 + MLT1H1 LTR MaLR 40 263 -327 321 257 76 35 chr6 59838692 59838836 -129440718 + MLT1H1 LTR MaLR 406 555 0 384 318 101 16 chr6 59839200 59839329 -129440225 + MIR SINE MIR 18 157 -105 1628 199 0 3 chr6 59841336 59841622 -129437932 - AluJo SINE Alu -23 289 5 230 330 20 20 chr6 59841949 59842049 -129437505 - MIR SINE MIR -108 154 55 32 43 0 0 chr6 59842110 59842156 -129437398 + AT_rich Low_complexity Low_complexity 1 46 0 3174 244 49 27 chr6 59842281 59843824 -129435730 - L1ME1 LINE L1 -5 6230 4652 672 287 197 15 chr6 59843825 59844418 -129435136 - L1ME1 LINE L1 -1662 4553 3853 548 172 31 31 chr6 59844423 59844563 -129434991 + MER51A LTR ERV1 1 140 -237 1776 122 65 10 chr6 59844627 59844921 -129434633 + MER51B LTR ERV1 68 377 0 298 211 53 35 chr6 59844924 59845038 -129434516 - L1 LINE L1 -2391 3824 3709 182 33 67 0 chr6 59849000 59849030 -129430524 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 806 287 88 46 chr6 59849188 59850283 -129429271 - L1ME1 LINE L1 -4898 1498 358 5768 108 26 6 chr6 59850286 59850658 -129428896 - L1PB1 LINE L1 -7 6144 5781 477 13 13 53 chr6 59850658 59850734 -129428820 + (TA)n Simple_repeat Simple_repeat 2 74 0 5768 108 26 6 chr6 59850734 59851614 -129427940 - L1PB1 LINE L1 -370 5781 4892 3315 123 29 3 chr6 59851617 59852421 -129427133 + L1PBa LINE L1 2412 3234 -3628 414 345 42 30 chr6 59852422 59852755 -129426799 - L1ME1 LINE L1 -6025 371 35 2715 187 10 41 chr6 59854109 59854713 -129424841 + LTR60 LTR ERV1 1 585 -1 463 244 18 77 chr6 59855439 59855660 -129423894 + L1MEc LINE L1 662 869 -5527 257 304 11 0 chr6 59855657 59855749 -129423805 - L1MEc LINE L1 -4617 1779 1687 * 2066 271 50 12 chr6 59855734 59856377 -129423177 - L1MEc LINE L1 -5696 700 34 714 147 0 0 chr6 59856443 59856559 -129422995 - AluSp/q SINE Alu -5 308 193 24 32 0 0 chr6 59856828 59856859 -129422695 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr6 59856923 59856956 -129422598 + AT_rich Low_complexity Low_complexity 1 33 0 2979 171 27 24 chr6 59856965 59857661 -129421893 - L1MA7 LINE L1 -31 6260 5457 875 185 6 0 chr6 59857661 59857814 -129421740 + L1PA8A LINE L1 5971 6128 -3 820 99 0 0 chr6 59857869 59857980 -129421574 - AluSg/x SINE Alu -8 302 192 559 176 125 43 chr6 59857980 59858092 -129421462 - L1MA7 LINE L1 -753 5393 5292 474 18 0 0 chr6 59858092 59858147 -129421407 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 559 176 125 43 chr6 59858147 59858254 -129421300 - L1MA7 LINE L1 -854 5292 5190 233 214 0 0 chr6 59858258 59858300 -129421254 + L1 LINE L1 4931 4972 -1174 702 101 0 10 chr6 59858301 59858400 -129421154 + MER4A LTR ERV1 1 98 -566 1829 123 158 75 chr6 59858400 59858773 -129420781 + MER4A LTR ERV1 261 664 0 1097 190 14 0 chr6 59858773 59858989 -129420565 + L1 LINE L1 4970 5188 -958 23 0 0 0 chr6 59859051 59859074 -129420480 + AT_rich Low_complexity Low_complexity 1 23 0 298 336 41 0 chr6 59859441 59859563 -129419991 + MIR SINE MIR 132 258 -4 23 54 0 0 chr6 59859564 59859601 -129419953 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 59859870 59859893 -129419661 + AT_rich Low_complexity Low_complexity 1 23 0 217 330 77 11 chr6 59860136 59860227 -129419327 - L2 LINE L2 -186 3086 2990 298 314 50 16 chr6 59860542 59860663 -129418891 - MIR3 SINE MIR -2 206 82 201 158 0 0 chr6 59860806 59860844 -129418710 + T-rich Low_complexity Low_complexity 3 40 0 25 0 0 0 chr6 59860898 59860923 -129418631 + AT_rich Low_complexity Low_complexity 1 25 0 3016 130 11 2 chr6 59860926 59861394 -129418160 - L1PA16 LINE L1 -9 6157 5686 1062 156 34 0 chr6 59861946 59862151 -129417403 - L1MA5A LINE L1 -3 6294 6083 264 30 0 0 chr6 59862688 59862721 -129416833 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 219 186 0 0 chr6 59863190 59863233 -129416321 + (TATG)n Simple_repeat Simple_repeat 2 44 0 227 174 0 0 chr6 59863235 59863281 -129416273 - LTR66 LTR ERVL -171 439 394 534 295 20 13 chr6 59863427 59863576 -129415978 + MER5B DNA MER1_type 20 169 -9 23 78 0 0 chr6 59863746 59863797 -129415757 + AT_rich Low_complexity Low_complexity 1 51 0 243 113 25 100 chr6 59864162 59864242 -129415312 + T-rich Low_complexity Low_complexity 3 76 0 3235 179 33 0 chr6 59865574 59866179 -129413375 - MST-int LTR MaLR -1026 625 1 367 333 38 9 chr6 59866464 59866677 -129412877 - MIR SINE MIR -38 224 6 194 367 28 28 chr6 59866759 59866868 -129412686 - L2 LINE L2 -40 3273 3165 252 328 114 48 chr6 59867077 59867367 -129412187 - L2 LINE L2 -348 2966 2658 293 365 9 0 chr6 59867898 59868005 -129411549 - MIR SINE MIR -68 140 33 6040 210 15 4 chr6 59869345 59870882 -129408672 + L1PA12 LINE L1 2667 4222 -3362 1768 166 80 11 chr6 59871324 59871697 -129407857 - L1MB2 LINE L1 0 6171 5773 619 146 0 0 chr6 59871767 59871863 -129407691 - L1MB2 LINE L1 -388 5783 5688 1832 142 39 0 chr6 59872287 59872598 -129406956 - L1MA2 LINE L1 -82 6222 5900 1291 194 14 47 chr6 59872598 59872877 -129406677 + AluJb SINE Alu 37 306 -6 36 0 0 0 chr6 59873563 59873599 -129405955 + AT_rich Low_complexity Low_complexity 1 36 0 13093 168 10 1 chr6 59873767 59875850 -129403704 + L1PA12 LINE L1 1 2102 -5479 307 188 0 0 chr6 59875951 59876049 -129403505 + Alu SINE Alu 235 332 0 1936 181 63 5 chr6 59876054 59876479 -129403075 + L1MC2 LINE L1 5890 6339 -5 240 366 0 21 chr6 59877063 59877156 -129402398 - L2 LINE L2 -5 3267 3177 2763 200 25 31 chr6 59877178 59877752 -129401802 - MER77 LTR ERV1 -4 601 54 198 288 0 17 chr6 59877770 59877829 -129401725 - L2 LINE L2 -76 3237 3180 218 208 19 0 chr6 59877834 59877887 -129401667 + (CCA)n Simple_repeat Simple_repeat 3 56 0 488 313 42 42 chr6 59877906 59878190 -129401364 - L2 LINE L2 -168 3145 2862 184 340 43 32 chr6 59878593 59878687 -129400867 + MIR3 SINE MIR 91 185 -23 2149 196 88 9 chr6 59878864 59879319 -129400235 - MLT1D LTR MaLR -1 504 14 200 195 24 0 chr6 59880793 59880834 -129398720 - L2 LINE L2 -205 3067 3026 337 320 118 0 chr6 59882281 59882459 -129397095 - L1MEc LINE L1 -2865 3350 3152 613 80 11 0 chr6 59882560 59882648 -129396906 - AluS SINE Alu -223 89 1 252 0 0 0 chr6 59882725 59882753 -129396801 + (TG)n Simple_repeat Simple_repeat 2 29 0 255 31 0 0 chr6 59882779 59882811 -129396743 + (TG)n Simple_repeat Simple_repeat 2 33 0 985 216 48 6 chr6 59883721 59884036 -129395518 - L1MEc LINE L1 -3970 2426 2099 818 159 0 8 chr6 59884057 59884189 -129395365 + FLAM_C SINE Alu 1 131 -12 997 258 92 18 chr6 59884201 59884635 -129394919 - L1MEc LINE L1 -4322 2074 1609 355 308 83 8 chr6 59884635 59884755 -129394799 - L1MEc LINE L1 -5142 1254 1126 660 234 6 30 chr6 59884894 59885061 -129394493 + MIR SINE MIR 100 262 0 271 233 0 0 chr6 59885124 59885184 -129394370 + MIR SINE MIR 36 95 -167 355 113 16 16 chr6 59885199 59885261 -129394293 - MER96 DNA MER1_type? -2 173 112 223 282 59 24 chr6 59885605 59885690 -129393864 - L2 LINE L2 -461 2853 2766 2835 84 0 5 chr6 59886342 59886736 -129392818 - L1P LINE L1 -1668 4478 4087 * 5128 69 61 1 chr6 59886730 59887840 -129391714 + L1PA7 LINE L1 4844 5992 -162 763 274 109 53 chr6 59888037 59888526 -129391028 + L1MC4a LINE L1 5257 5780 -2028 1883 173 7 10 chr6 59888526 59888826 -129390728 + AluJb SINE Alu 1 299 -13 763 274 109 53 chr6 59888826 59888879 -129390675 + L1MC4a LINE L1 5780 5829 -1979 244 174 22 0 chr6 59889403 59889449 -129390105 - MLT1H LTR MaLR 0 549 503 551 200 128 0 chr6 59889557 59889682 -129389872 + MIR SINE MIR 81 221 -41 808 113 9 9 chr6 59891678 59891793 -129387761 + AluJo/FLAM SINE Alu 18 132 -180 1565 202 3 18 chr6 59891795 59892077 -129387477 + AluJb SINE Alu 1 278 -34 532 196 26 15 chr6 59892082 59892354 -129387200 + GA-rich Low_complexity Low_complexity 1 275 0 259 354 0 13 chr6 59892890 59892969 -129386585 - L2 LINE L2 -19 3294 3217 540 260 78 7 chr6 59894002 59894156 -129385398 - MER5B DNA MER1_type -1 177 13 258 214 48 87 chr6 59894188 59894291 -129385263 - MER5A DNA MER1_type -35 154 56 332 349 78 6 chr6 59894457 59894623 -129384931 + MER5B DNA MER1_type 1 178 0 202 299 47 37 chr6 59894625 59894732 -129384822 - L3 LINE CR1 -367 1210 1103 2223 110 0 23 chr6 59895034 59895342 -129384212 + AluSx SINE Alu 1 301 -11 410 373 52 30 chr6 59895427 59895698 -129383856 + L2 LINE L2 2996 3272 0 244 306 82 45 chr6 59895905 59896039 -129383515 - MIR SINE MIR -55 207 69 242 167 33 50 chr6 59896455 59896515 -129383039 + CT-rich Low_complexity Low_complexity 3 61 0 483 160 76 69 chr6 59896518 59896649 -129382905 - FLAM_C SINE Alu 0 133 2 188 149 85 21 chr6 59897076 59897123 -129382431 - L2 LINE L2 -6 3266 3217 303 85 0 0 chr6 59897317 59897364 -129382190 + (TG)n Simple_repeat Simple_repeat 2 48 0 475 288 0 6 chr6 59897397 59897574 -129381980 + (TG)n Simple_repeat Simple_repeat 2 177 0 950 209 0 6 chr6 59897804 59897986 -129381568 + MLT1A1 LTR MaLR 185 365 0 1067 218 5 14 chr6 59898201 59898421 -129381133 + MLT1E LTR MaLR 376 593 0 563 287 79 21 chr6 59898765 59899007 -129380547 - MIR SINE MIR 0 262 2 477 0 0 0 chr6 59899616 59899669 -129379885 + (CA)n Simple_repeat Simple_repeat 1 53 0 384 214 30 69 chr6 59899784 59899915 -129379639 - MLT1L LTR MaLR -6 609 484 402 281 10 99 chr6 59900159 59900351 -129379203 + MER5A DNA MER1_type 7 181 -8 410 189 0 0 chr6 59900922 59900996 -129378558 - MER52A LTR ERV1 0 1755 1682 * 4348 200 38 51 chr6 59900986 59902121 -129377433 - MER52A LTR ERV1 -559 1196 77 1454 153 58 8 chr6 59902420 59902662 -129376892 + AluJb SINE Alu 38 291 -21 953 191 173 58 chr6 59902762 59903108 -129376446 + MLT1D LTR MaLR 120 505 0 457 271 108 18 chr6 59903541 59903707 -129375847 - MER5A DNA MER1_type -6 183 3 383 270 10 0 chr6 59903719 59903819 -129375735 - MIR3 SINE MIR -27 181 81 235 170 132 0 chr6 59904804 59904857 -129374697 - L2 LINE L2 -19 3294 3235 * 298 193 241 0 chr6 59904842 59904925 -129374629 + L2 LINE L2 3211 3313 0 225 317 8 25 chr6 59905241 59905361 -129374193 + GA-rich Low_complexity Low_complexity 2 119 0 363 44 0 0 chr6 59907119 59907164 -129372390 + (GGCTG)n Simple_repeat Simple_repeat 5 49 0 239 339 52 9 chr6 59907339 59907454 -129372100 - MIR3 SINE MIR -78 130 11 428 268 213 11 chr6 59908115 59908298 -129371256 + MIR SINE MIR 5 224 -38 190 284 202 0 chr6 59908551 59908660 -129370894 - L2 LINE L2 -217 3055 2925 2088 145 0 0 chr6 59908662 59908958 -129370596 + AluJb SINE Alu 1 296 -16 1354 221 65 9 chr6 59910346 59910685 -129368869 + MLT2D LTR ERVL 1 358 -56 240 130 22 0 chr6 59910768 59910814 -129368740 + MLT2D LTR ERVL 474 520 0 597 307 97 50 chr6 59910923 59911811 -129367743 + L2 LINE L2 2335 3312 -1 1254 133 15 10 chr6 59912221 59912417 -129367137 - MER1B DNA MER1_type 0 339 143 1089 139 0 18 chr6 59912427 59912593 -129366961 - AluSg/x SINE Alu 0 312 150 1692 197 39 77 chr6 59912823 59912987 -129366567 + MLT1C LTR MaLR 8 177 -290 1907 159 3 3 chr6 59912987 59913283 -129366271 + AluJo SINE Alu 1 296 -16 1692 197 39 77 chr6 59913283 59913586 -129365968 + MLT1C LTR MaLR 177 457 -10 191 324 9 65 chr6 59913704 59913812 -129365742 - MIR SINE MIR -44 218 117 377 235 12 0 chr6 59916207 59916292 -129363262 - LTR16C LTR ERVL 0 491 406 246 171 0 0 chr6 59916559 59916600 -129362954 + Alu SINE Alu 49 89 -77 2042 127 0 3 chr6 59916808 59917145 -129362409 + AluSx SINE Alu 2 337 0 185 260 269 19 chr6 59917607 59917711 -129361843 - L2 LINE L2 -5 3267 3138 462 333 101 8 chr6 59918694 59918931 -129360623 - MIR SINE MIR -2 260 2 256 269 55 0 chr6 59919777 59919903 -129359651 - MIR SINE MIR -33 175 42 350 285 171 0 chr6 59920108 59920231 -129359323 - L2 LINE L2 -21 3251 3108 806 281 142 43 chr6 59920843 59921380 -129358174 - L2 LINE L2 -872 2442 1853 220 380 65 0 chr6 59921550 59921642 -129357912 + L2 LINE L2 3116 3213 -59 263 206 82 0 chr6 59921642 59921715 -129357839 + L1M4 LINE L1 4986 5064 -1082 288 200 0 43 chr6 59921822 59921892 -129357662 - L1MD3 LINE L1 -33 7962 7896 1711 237 9 16 chr6 59921894 59922325 -129357229 - L1MD3 LINE L1 -166 7829 7402 306 0 0 0 chr6 59922344 59922378 -129357176 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 523 290 0 22 chr6 59922771 59922909 -129356645 + MIR SINE MIR 23 157 -105 333 259 120 9 chr6 59923400 59923508 -129356046 + MIR SINE MIR 28 147 -115 233 336 61 30 chr6 59923961 59924092 -129355462 + MIR SINE MIR 126 260 -2 2241 98 10 0 chr6 59924929 59925225 -129354329 + AluSx SINE Alu 1 299 -13 318 312 56 92 chr6 59926007 59926257 -129353297 + L2 LINE L2 2953 3193 -79 2989 154 10 35 chr6 59927185 59927619 -129351935 + Tigger1 DNA MER2_type 1342 1758 -660 2486 54 7 7 chr6 59927619 59927916 -129351638 - AluY SINE Alu -14 297 1 2989 154 10 35 chr6 59927916 59928080 -129351474 + Tigger1 DNA MER2_type 1758 1925 -493 806 167 0 78 chr6 59928167 59928286 -129351268 + Tigger1 DNA MER2_type 1906 2006 -412 1299 231 23 13 chr6 59928286 59928593 -129350961 - AluJo SINE Alu -2 310 1 806 167 0 78 chr6 59928593 59928665 -129350889 + Tigger1 DNA MER2_type 2006 2082 -336 338 200 253 0 chr6 59929856 59929951 -129349603 - MER5A DNA MER1_type -32 157 39 321 216 143 0 chr6 59929993 59930093 -129349461 - MER5B DNA MER1_type -21 160 55 227 322 92 0 chr6 59930315 59930402 -129349152 + L2 LINE L2 3147 3241 -31 715 210 64 13 chr6 59933434 59933591 -129345963 - MER5B DNA MER1_type -13 165 1 507 246 55 55 chr6 59934642 59934825 -129344729 - MIR SINE MIR -61 201 19 250 248 19 0 chr6 59934864 59934937 -129344617 + MER5A DNA MER1_type 17 91 -98 684 96 56 16 chr6 59935340 59935465 -129344089 - MER41B LTR ERV1 -2 633 504 1193 73 34 6 chr6 59935606 59935783 -129343771 + MER41B LTR ERV1 1 182 -453 2283 126 0 0 chr6 59935903 59936204 -129343350 + AluSx SINE Alu 1 301 -11 295 231 88 16 chr6 59936235 59936393 -129343161 - LTR16A LTR ERVL -78 372 127 275 272 78 24 chr6 59936740 59936866 -129342688 - MIR SINE MIR -67 141 17 269 291 13 0 chr6 59937532 59937611 -129341943 - L2 LINE L2 -17 3296 3217 582 192 0 40 chr6 59937611 59937736 -129341818 + FLAM_C SINE Alu 13 132 -11 4429 84 11 9 chr6 59938676 59939308 -129340246 + MER41B LTR ERV1 1 633 -2 307 300 50 0 chr6 59939345 59939445 -129340109 + MIR SINE MIR 93 197 -65 745 188 0 30 chr6 59939564 59939697 -129339857 + MER58A DNA MER1_type 5 133 0 11638 114 28 25 chr6 59939808 59939994 -129339560 + Tigger1 DNA MER2_type 461 645 -1773 2711 137 17 9 chr6 59939994 59940454 -129339100 + L1PA16 LINE L1 5703 6166 0 11638 114 28 25 chr6 59940454 59941880 -129337674 + Tigger1 DNA MER2_type 645 2083 -335 1681 199 3 7 chr6 59941880 59942181 -129337373 + AluJo SINE Alu 2 301 -11 11638 114 28 25 chr6 59942181 59942518 -129337036 + Tigger1 DNA MER2_type 2083 2417 -1 1648 177 42 11 chr6 59943561 59943844 -129335710 - AluJo SINE Alu -20 292 1 359 307 106 82 chr6 59944398 59944727 -129334827 + L2 LINE L2 2934 3270 -2 253 239 104 15 chr6 59947134 59947201 -129332353 + L2 LINE L2 3199 3271 -1 648 244 15 13 chr6 59948917 59949100 -129330454 + MIR SINE MIR 19 197 -65 2107 110 11 7 chr6 59949104 59949385 -129330169 - AluSx SINE Alu -14 298 17 586 258 161 23 chr6 59949401 59949618 -129329936 - MIR SINE MIR -14 248 2 2152 124 6 16 chr6 59950043 59950358 -129329196 + AluSx SINE Alu 1 312 0 731 142 22 8 chr6 59951032 59951166 -129328388 - L1PB4 LINE L1 -90 6066 5931 279 262 19 28 chr6 59951602 59951709 -129327845 + LTR67 LTR ERVL 428 533 -24 659 179 77 6 chr6 59952192 59952360 -129327194 - MER104 DNA MER2_type 0 180 1 316 273 166 29 chr6 59952370 59952575 -129326979 - MIR SINE MIR 0 262 30 1813 199 79 19 chr6 59953027 59953459 -129326095 - L1ME1 LINE L1 -6 6160 5703 3974 32 0 2 chr6 59953472 59953967 -129325587 - L1PA4 LINE L1 -3 6152 5659 930 269 53 43 chr6 59954070 59954464 -129325090 - LTR16B LTR ERVL -66 398 1 939 238 167 3 chr6 59954466 59954760 -129324794 - L2 LINE L2 -988 2326 1985 293 306 87 11 chr6 59954880 59955098 -129324456 + LTR16A1 LTR ERVL 16 305 -145 624 283 16 65 chr6 59955264 59955511 -129324043 + L2 LINE L2 3075 3309 -4 572 240 20 7 chr6 59956807 59956957 -129322597 - MIR SINE MIR -98 164 13 366 229 55 122 chr6 59957109 59957240 -129322314 + MLT1C LTR MaLR 1 92 -298 2041 120 13 3 chr6 59957240 59957539 -129322015 + AluJb SINE Alu 1 302 -10 366 229 55 122 chr6 59957539 59957661 -129321893 + MLT1C LTR MaLR 92 221 -169 269 154 39 0 chr6 59957662 59957714 -129321840 + MIR SINE MIR 111 164 -98 849 238 43 23 chr6 59957822 59958078 -129321476 + MLT1C LTR MaLR 207 467 0 419 265 143 10 chr6 59958827 59959092 -129320462 + L1ME LINE L1 5526 5837 -284 634 180 0 9 chr6 59959092 59959203 -129320351 - FRAM SINE Alu -21 155 46 221 235 39 0 chr6 59960526 59960577 -129318977 + MIR SINE MIR 85 137 -125 219 274 0 0 chr6 59961504 59961555 -129317999 + L2 LINE L2 3213 3263 -9 267 31 0 0 chr6 59961557 59961589 -129317965 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 261 197 0 33 chr6 59962915 59962976 -129316578 + L2 LINE L2 3255 3313 0 2281 117 14 11 chr6 59963056 59963416 -129316138 - THE1B LTR MaLR 0 364 4 282 276 23 23 chr6 59963418 59963505 -129316049 - MIR SINE MIR -157 105 19 1274 211 45 102 chr6 59963775 59964199 -129315355 - MLT1C LTR MaLR 0 467 73 757 135 15 15 chr6 59964199 59964332 -129315222 + FLAM_C SINE Alu 1 133 0 1274 211 45 102 chr6 59964332 59964396 -129315158 - MLT1C LTR MaLR -394 73 7 581 226 8 0 chr6 59964737 59964861 -129314693 - L1MB7 LINE L1 -335 5849 5725 901 241 4 0 chr6 59964868 59965109 -129314445 - L1MA6 LINE L1 -17 6283 6042 943 229 67 32 chr6 59965832 59965937 -129313617 + MLT1H LTR MaLR 12 112 -437 1169 231 143 36 chr6 59965937 59966357 -129313197 - MLT1C LTR MaLR -2 465 1 943 229 67 32 chr6 59966357 59966504 -129313050 + MLT1H LTR MaLR 112 273 -276 561 252 124 41 chr6 59966474 59966716 -129312838 + MLT1H LTR MaLR 288 549 0 * 2026 122 14 0 chr6 59966797 59967111 -129312443 + AluSg1 SINE Alu 1 318 0 2206 100 0 4 chr6 59967197 59967526 -129312028 + AluSg SINE Alu 1 328 0 309 204 57 11 chr6 59968698 59968786 -129310768 + L3 LINE CR1 1398 1489 -88 293 269 58 10 chr6 59968813 59968917 -129310637 - MIR SINE MIR -73 189 81 557 208 117 13 chr6 59970190 59970344 -129309210 + LTR16C LTR ERVL 316 485 -6 955 266 37 0 chr6 59971329 59971573 -129307981 - MIR SINE MIR -5 257 5 2130 110 11 0 chr6 59971678 59971982 -129307572 + AluSx SINE Alu 1 307 0 677 208 23 17 chr6 59972011 59972184 -129307370 + MLT2B1 LTR ERVL 1 174 -346 184 379 9 9 chr6 59972752 59972868 -129306686 - MIR SINE MIR -71 137 22 231 300 29 0 chr6 59972868 59972938 -129306616 + (CATG)n Simple_repeat Simple_repeat 1 72 0 350 307 59 13 chr6 59973786 59973939 -129305615 + LTR16C LTR ERVL 83 242 -249 459 274 14 14 chr6 59973999 59974145 -129305409 + LTR16C LTR ERVL 346 491 0 271 303 30 91 chr6 59974169 59974335 -129305219 + MIR SINE MIR 35 189 -61 2593 66 0 0 chr6 59974794 59975095 -129304459 + AluSq SINE Alu 1 301 -12 343 296 21 5 chr6 59975103 59975303 -129304251 + (CATCC)n Simple_repeat Simple_repeat 1 203 0 641 319 20 0 chr6 59975692 59975896 -129303658 + MIR SINE MIR 9 216 -46 338 229 0 0 chr6 59976007 59976068 -129303486 - MST-int LTR MaLR -897 754 694 6143 91 9 1 chr6 59976780 59978125 -129301429 + L1PA5 LINE L1 4810 6153 -1 308 260 34 62 chr6 59978866 59979012 -129300542 - MIR SINE MIR -2 260 119 384 208 32 40 chr6 59979118 59979243 -129300311 + Charlie4 DNA MER1_type 1816 1939 -22 2018 125 17 17 chr6 59979693 59979988 -129299566 + AluSx SINE Alu 1 295 -17 192 363 12 12 chr6 59980166 59980246 -129299308 + L2 LINE L2 3191 3270 -2 300 133 0 0 chr6 59980323 59980383 -129299171 + (GA)n Simple_repeat Simple_repeat 2 61 0 547 228 57 0 chr6 59982604 59982727 -129296827 - MIR SINE MIR -108 154 25 2542 72 3 0 chr6 59983715 59984020 -129295534 - AluY SINE Alu -5 306 1 240 346 82 6 chr6 59984299 59984458 -129295096 - MIR SINE MIR -71 191 21 390 246 70 18 chr6 59985683 59985797 -129293757 + MIR3 SINE MIR 8 127 -81 481 300 80 61 chr6 59985891 59986000 -129293554 - LTR67 LTR ERVL -5 552 447 1743 145 42 53 chr6 59986000 59986041 -129293513 - THE1C LTR MaLR 0 375 335 2200 103 3 7 chr6 59986041 59986341 -129293213 + AluSx SINE Alu 1 299 -13 1743 145 42 53 chr6 59986341 59986678 -129292876 - THE1C LTR MaLR -40 335 1 481 300 80 61 chr6 59986678 59987092 -129292462 - LTR67 LTR ERVL -110 447 19 251 105 0 0 chr6 59987367 59987405 -129292149 - MLT2B1 LTR ERVL -6 514 477 279 140 0 0 chr6 59987429 59987479 -129292075 + (TG)n Simple_repeat Simple_repeat 1 50 0 237 266 83 118 chr6 59987811 59987980 -129291574 + MLT1I LTR MaLR 96 258 -151 22 0 0 0 chr6 59989173 59989195 -129290359 + AT_rich Low_complexity Low_complexity 1 22 0 221 167 0 0 chr6 59989421 59989463 -129290091 + T-rich Low_complexity Low_complexity 1 42 0 7681 23 0 0 chr6 59989464 59990545 -129289009 - L1PA3 LINE L1 -3 6152 5072 30 0 0 0 chr6 59992588 59992618 -129286936 + AT_rich Low_complexity Low_complexity 1 30 0 225 370 16 24 chr6 59992821 59992948 -129286606 - L3 LINE CR1 -840 737 612 794 273 97 43 chr6 59993073 59993557 -129285997 + L2 LINE L2 2531 3042 -271 2524 32 0 3 chr6 59994655 59994965 -129284589 + L1PA5 LINE L1 5840 6148 -6 268 395 87 30 chr6 59995356 59995655 -129283899 + L2 LINE L2 2662 2977 -337 343 284 134 15 chr6 59995776 59995977 -129283577 + L2 LINE L2 3084 3308 -5 313 338 89 30 chr6 59996441 59996635 -129282919 - L1MC5 LINE L1 -243 7718 7537 313 0 51 34 chr6 59996635 59996694 -129282860 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 313 338 89 30 chr6 59996694 59996904 -129282650 - L1MC5 LINE L1 -424 7537 7290 226 246 82 16 chr6 59997028 59997150 -129282404 - L1MC4a LINE L1 -633 7175 7046 7093 53 6 3 chr6 59998503 59999397 -129280157 - L1PA5 LINE L1 -1 6153 5258 7279 41 6 0 chr6 59999678 60001064 -129278490 - L1PA5 LINE L1 -1 6153 4766 911 274 58 87 chr6 60001367 60002242 -129277312 + L1MC5 LINE L1 6277 6975 -833 249 241 18 106 chr6 60002270 60002440 -129277114 + L1MC5 LINE L1 7763 7917 -44 405 0 0 0 chr6 60003097 60003142 -129276412 + (TG)n Simple_repeat Simple_repeat 2 46 0 1697 197 3 0 chr6 60004851 60005156 -129274398 + AluJb SINE Alu 6 311 -1 2396 93 0 6 chr6 60005160 60005471 -129274083 + AluSc SINE Alu 1 309 0 254 114 23 0 chr6 60006123 60006167 -129273387 - MADE1 DNA Mariner -34 46 2 625 244 23 112 chr6 60006258 60006516 -129273038 - MLT1H LTR MaLR -312 237 3 26 0 0 0 chr6 60006735 60006761 -129272793 + AT_rich Low_complexity Low_complexity 1 26 0 216 229 200 0 chr6 60007626 60007696 -129271858 + MIR SINE MIR 71 154 -108 1021 280 149 25 chr6 60007756 60008285 -129271269 - MLT1G1 LTR MaLR 0 595 1 181 376 86 8 chr6 60008755 60008872 -129270682 + L2 LINE L2 3176 3301 -12 317 250 69 28 chr6 60009994 60010138 -129269416 - L1M4 LINE L1 -1420 4726 4577 22 0 0 0 chr6 60010142 60010164 -129269390 + AT_rich Low_complexity Low_complexity 1 22 0 1596 21 0 0 chr6 60010599 60010814 -129268740 + L1PA2 LINE L1 5957 6171 0 22 70 0 0 chr6 60011003 60011046 -129268508 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr6 60011227 60011259 -129268295 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 60011297 60011319 -129268235 + AT_rich Low_complexity Low_complexity 1 22 0 233 167 42 0 chr6 60011531 60011579 -129267975 - L2 LINE L2 -1 3312 3263 1833 190 103 48 chr6 60012532 60012567 -129266987 + MER89 LTR ERV1 7 39 -520 1758 176 73 0 chr6 60012567 60012908 -129266646 + MER47A DNA MER2_type 1 366 0 1833 190 103 48 chr6 60012908 60013356 -129266198 + MER89 LTR ERV1 39 517 -42 29 28 0 0 chr6 60013684 60013720 -129265834 + AT_rich Low_complexity Low_complexity 1 36 0 257 314 44 14 chr6 60014052 60014198 -129265356 + MLT1G LTR MaLR 21 210 -339 417 235 30 88 chr6 60014393 60014634 -129264920 + MLT1G LTR MaLR 322 573 -17 246 176 0 0 chr6 60014908 60014959 -129264595 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 250 235 0 0 chr6 60015045 60015096 -129264458 - L1MC4 LINE L1 -1333 6709 6659 186 333 65 28 chr6 60015190 60015298 -129264256 - MIR SINE MIR -67 195 84 2003 142 3 0 chr6 60015341 60015650 -129263904 - AluSg SINE Alu 0 310 1 320 287 259 0 chr6 60015923 60016066 -129263488 - MER5A DNA MER1_type -6 183 4 5243 93 12 5 chr6 60016395 60017147 -129262407 - L1P LINE L1 -1303 4843 4087 2812 131 4 2 chr6 60017140 60017598 -129261956 + L1P LINE L1 4843 5301 -845 * 526 265 24 56 chr6 60017703 60018076 -129261478 - L1MEc LINE L1 -3024 3191 2831 230 266 131 29 chr6 60018087 60018530 -129261024 - L1MEc LINE L1 -3442 2773 2286 247 320 128 11 chr6 60018995 60019432 -129260122 - L1MEc LINE L1 -4662 1734 1247 225 0 0 0 chr6 60019432 60019457 -129260097 + (CA)n Simple_repeat Simple_repeat 2 26 0 1564 32 0 0 chr6 60020118 60020345 -129259209 + L1PA2 LINE L1 5957 6183 0 22 70 0 0 chr6 60020534 60020577 -129258977 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr6 60021333 60021362 -129258192 + AT_rich Low_complexity Low_complexity 1 29 0 1172 256 28 36 chr6 60021920 60022275 -129257279 - MLT2E LTR ERVL -2 626 275 1986 244 61 6 chr6 60022275 60022750 -129256804 - REP3 LTR ERV 0 562 62 242 367 124 24 chr6 60023787 60023956 -129255598 - MIR SINE MIR 0 262 77 343 350 24 0 chr6 60024389 60024512 -129255042 + MER5B DNA MER1_type 52 177 -1 975 230 0 22 chr6 60024519 60024741 -129254813 - MER20 DNA MER1_type -1 218 2 425 308 34 0 chr6 60024787 60024904 -129254650 - MER5A DNA MER1_type -1 188 68 2047 195 5 26 chr6 60025363 60025788 -129253766 - Tigger1 DNA MER2_type -2002 416 1 536 296 22 43 chr6 60025788 60026018 -129253536 - L2 LINE L2 -163 3150 2926 885 299 28 14 chr6 60026719 60027003 -129252551 + MLT1E LTR MaLR 306 593 0 1339 187 153 48 chr6 60027989 60028401 -129251153 + MSTB2 LTR MaLR 3 457 0 1636 290 65 50 chr6 60029774 60031014 -129248540 + L1ME3A LINE L1 4876 6133 -37 222 377 53 9 chr6 60031392 60031506 -129248048 - MIR SINE MIR -78 184 66 182 408 50 25 chr6 60031572 60031692 -129247862 + L2 LINE L2 3140 3262 -10 258 56 0 0 chr6 60032906 60032942 -129246612 + (CA)n Simple_repeat Simple_repeat 2 37 0 281 156 0 16 chr6 60033133 60033197 -129246357 + CT-rich Low_complexity Low_complexity 3 65 0 1922 187 24 29 chr6 60034283 60034840 -129244714 - MLT2A2 LTR ERVL 0 554 1 2066 136 0 16 chr6 60035174 60035483 -129244071 + AluSx SINE Alu 1 304 -8 3772 191 99 2 chr6 60035689 60036586 -129242968 - L1 LINE L1 -845 5301 4318 505 252 84 62 chr6 60036686 60036912 -129242642 + MIR SINE MIR 32 262 0 385 83 14 14 chr6 60037051 60037123 -129242431 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 37 69 0 0 chr6 60037725 60037797 -129241757 + AT_rich Low_complexity Low_complexity 1 72 0 2915 198 78 6 chr6 60037854 60038520 -129241034 - L1MC3 LINE L1 -7 7778 7065 224 270 14 14 chr6 60038884 60038958 -129240596 - L3b LINE CR1 -196 1387 1314 1444 211 60 88 chr6 60038991 60039032 -129240522 - MLT2B1 LTR ERVL 0 520 479 210 37 0 0 chr6 60039032 60039059 -129240495 + (TG)n Simple_repeat Simple_repeat 2 28 0 1444 211 60 88 chr6 60039059 60039552 -129240002 - MLT2B1 LTR ERVL -41 479 1 28 48 0 0 chr6 60039703 60039745 -129239809 + AT_rich Low_complexity Low_complexity 1 42 0 259 292 36 58 chr6 60039917 60040054 -129239500 - L2 LINE L2 -18 3295 3162 260 199 33 40 chr6 60040129 60040280 -129239274 + (TAA)n Simple_repeat Simple_repeat 3 152 0 384 148 111 12 chr6 60040418 60040499 -129239055 - L1MC3 LINE L1 -15 7770 7682 1833 174 42 94 chr6 60040558 60041059 -129238495 + LTR42 LTR ERVL 4 478 -17 629 266 128 24 chr6 60041075 60041395 -129238159 - L2 LINE L2 -171 3142 2804 2108 134 0 6 chr6 60041982 60042296 -129237258 - AluSx SINE Alu 0 312 1 180 401 94 5 chr6 60042577 60042769 -129236785 - MIR SINE MIR -23 239 31 873 197 152 26 chr6 60043387 60043656 -129235898 + MER58D DNA MER1_type 79 381 -5 578 188 8 39 chr6 60043893 60044021 -129235533 + FLAM_C SINE Alu 1 124 -9 25 0 0 0 chr6 60044022 60044047 -129235507 + AT_rich Low_complexity Low_complexity 1 25 0 1813 213 28 44 chr6 60044193 60044626 -129234928 + MSTB LTR MaLR 1 426 0 7060 219 28 28 chr6 60044626 60046277 -129233277 + MSTB-int LTR MaLR 1 1651 0 2043 200 24 21 chr6 60046277 60046702 -129232852 + MSTB LTR MaLR 1 426 0 1789 130 0 0 chr6 60047131 60047378 -129232176 + AluSq SINE Alu 4 250 -63 25 0 0 0 chr6 60047378 60047403 -129232151 + AT_rich Low_complexity Low_complexity 1 25 0 315 338 14 27 chr6 60048179 60048327 -129231227 + MER5A DNA MER1_type 38 183 -6 678 261 68 3 chr6 60048373 60048727 -129230827 + LTR40c LTR ERVL 44 441 -21 2091 96 18 0 chr6 60048820 60049121 -129230433 + AluSp SINE Alu 1 306 0 267 103 0 0 chr6 60049325 60049364 -129230190 + (CA)n Simple_repeat Simple_repeat 2 40 0 879 81 8 0 chr6 60050234 60050358 -129229196 - AluY SINE Alu -11 300 176 226 270 16 0 chr6 60051821 60051884 -129227670 - LTR50 LTR ERVL -122 673 610 363 289 158 18 chr6 60052057 60052205 -129227349 - LTR50 LTR ERVL -514 281 155 221 0 0 33 chr6 60052205 60052235 -129227319 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 363 289 158 18 chr6 60052235 60052314 -129227240 - LTR50 LTR ERVL -640 155 22 379 134 24 0 chr6 60052924 60053006 -129226548 + CT-rich Low_complexity Low_complexity 3 86 0 2309 61 0 4 chr6 60053886 60054164 -129225390 + AluY SINE Alu 11 287 -24 2204 86 0 0 chr6 60054515 60054793 -129224761 - AluSp SINE Alu -35 278 1 255 313 87 20 chr6 60055207 60055402 -129224152 - L2 LINE L2 -1312 2002 1795 180 0 0 0 chr6 60055433 60055453 -129224101 + (TAA)n Simple_repeat Simple_repeat 1 20 0 354 181 105 67 chr6 60055486 60055591 -129223963 - MIR SINE MIR -74 188 80 1476 84 15 5 chr6 60055595 60055797 -129223757 + AluY SINE Alu 100 303 -8 27 0 0 0 chr6 60056285 60056312 -129223242 + AT_rich Low_complexity Low_complexity 1 27 0 1209 152 41 4 chr6 60056320 60056563 -129222991 - L1MA8 LINE L1 -4 6287 6036 283 98 0 0 chr6 60056733 60056774 -129222780 + MER21A LTR ERV1 538 578 -353 27 49 0 0 chr6 60057463 60057504 -129222050 + AT_rich Low_complexity Low_complexity 1 41 0 247 367 55 31 chr6 60058630 60058758 -129220796 - MIR SINE MIR -111 151 21 264 293 0 0 chr6 60058977 60059052 -129220502 + (TG)n Simple_repeat Simple_repeat 2 76 0 195 42 0 0 chr6 60059798 60059822 -129219732 + (T)n Simple_repeat Simple_repeat 1 24 0 213 322 35 46 chr6 60060029 60060116 -129219438 - MIR3 SINE MIR -122 86 1 26 0 0 0 chr6 60060386 60060412 -129219142 + AT_rich Low_complexity Low_complexity 1 26 0 287 355 103 7 chr6 60060992 60061147 -129218407 + MIR3 SINE MIR 33 202 -6 266 60 0 140 chr6 60062406 60062456 -129217098 + MLT1B LTR MaLR 1 43 -347 836 200 30 6 chr6 60062466 60062631 -129216923 + MLT1B LTR MaLR 222 390 0 345 192 126 26 chr6 60063315 60063466 -129216088 + MER104 DNA Tc2 14 179 -1 1235 126 56 9 chr6 60064302 60064517 -129215037 - L1P LINE L1 -1265 4881 4657 776 51 10 0 chr6 60064517 60064609 -129214945 + L1PA7 LINE L1 6047 6145 -9 539 271 132 49 chr6 60064689 60065086 -129214468 - MLT1E LTR MaLR -131 411 7 357 258 0 0 chr6 60065103 60065266 -129214288 + (TA)n Simple_repeat Simple_repeat 1 163 0 350 343 116 37 chr6 60065648 60066164 -129213390 - HAL1 LINE L1 -768 1739 1183 26 50 0 0 chr6 60066164 60066204 -129213350 + AT_rich Low_complexity Low_complexity 1 40 0 883 349 105 57 chr6 60067364 60068555 -129210999 - L2 LINE L2 0 3313 1970 1536 211 39 11 chr6 60068555 60068910 -129210644 + MLT1A1 LTR MaLR 1 365 0 883 349 105 57 chr6 60068910 60069744 -129209810 - L2 LINE L2 -1343 1970 1178 195 289 0 0 chr6 60069791 60069843 -129209711 - L2 LINE L2 -247 3066 3015 25 0 0 0 chr6 60070765 60070790 -129208764 + AT_rich Low_complexity Low_complexity 1 25 0 1221 235 17 24 chr6 60071352 60071641 -129207913 - MLT1C LTR MaLR 0 467 181 8408 94 2 19 chr6 60071759 60073263 -129206291 - L1PA7 LINE L1 -13 6141 4661 2139 93 7 0 chr6 60073263 60073543 -129206011 - AluSg1 SINE Alu -17 292 11 8408 94 2 19 chr6 60073543 60074040 -129205514 - L1PA7 LINE L1 -1493 4661 4157 512 249 12 59 chr6 60074041 60074210 -129205344 - MLT1C LTR MaLR -298 169 9 189 0 0 0 chr6 60074513 60074534 -129205020 + (T)n Simple_repeat Simple_repeat 1 21 0 2323 57 0 54 chr6 60074570 60074886 -129204668 - AluY SINE Alu -12 299 1 243 353 8 42 chr6 60076228 60076347 -129203207 + L3 LINE CR1 362 476 -1101 345 24 0 0 chr6 60076719 60076761 -129202793 + (TG)n Simple_repeat Simple_repeat 2 43 0 213 178 0 0 chr6 60077134 60077179 -129202375 + CT-rich Low_complexity Low_complexity 1 45 0 405 113 28 0 chr6 60077179 60077250 -129202304 - L1PA16 LINE L1 -1 6165 6093 314 264 157 16 chr6 60078148 60078269 -129201285 - MLT1E1 LTR MaLR -516 138 1 1083 275 87 88 chr6 60078270 60078950 -129200604 - MLT1E3-int LTR MaLR -1 1370 692 595 285 89 31 chr6 60079173 60079214 -129200340 - MLT1E3-int LTR MaLR -765 606 569 1715 115 0 4 chr6 60079214 60079457 -129200097 - AluSc SINE Alu -9 300 59 595 285 89 31 chr6 60079457 60079873 -129199681 - MLT1E3-int LTR MaLR -802 569 1 1699 260 48 34 chr6 60079873 60080507 -129199047 - MLT1E3 LTR MaLR 0 624 6 910 358 46 29 chr6 60080583 60081240 -129198314 - HERV16 LTR ERVL -1145 4619 3952 1115 263 146 24 chr6 60081255 60081674 -129197880 + MLT1D LTR MaLR 32 501 -4 1670 333 59 45 chr6 60082339 60082977 -129196577 - HERV16 LTR ERVL -2417 2600 1972 1788 108 90 7 chr6 60082977 60083256 -129196298 + AluSx SINE Alu 1 302 -10 1670 333 59 45 chr6 60083256 60083915 -129195639 - HERV16 LTR ERVL -3045 1972 1187 279 316 54 18 chr6 60083897 60084065 -129195489 - HERV16 LTR ERVL -4202 794 621 * 657 328 15 38 chr6 60084632 60084894 -129194660 - LTR16A LTR ERVL -12 438 183 221 281 0 0 chr6 60085062 60085119 -129194435 + CT-rich Low_complexity Low_complexity 2 58 0 1184 247 26 45 chr6 60085164 60085545 -129194009 + MLT1A2 LTR MaLR 1 374 0 833 131 0 15 chr6 60085717 60085847 -129193707 - AluY SINE Alu -143 168 41 851 103 0 0 chr6 60085882 60085999 -129193555 + AluSg/x SINE Alu 180 296 -14 25 0 0 0 chr6 60086296 60086321 -129193233 + AT_rich Low_complexity Low_complexity 1 25 0 404 312 81 0 chr6 60086696 60086882 -129192672 + MLT1G LTR MaLR 344 544 -46 243 333 0 0 chr6 60086953 60087031 -129192523 - MIR SINE MIR -1 261 184 * 267 354 27 27 chr6 60087023 60087170 -129192384 - MIR SINE MIR -15 247 101 242 87 22 0 chr6 60088079 60088125 -129191429 + (TTTTA)n Simple_repeat Simple_repeat 4 50 0 2155 16 0 0 chr6 60088126 60088374 -129191180 - L1PA2 LINE L1 -5 6150 5903 227 362 150 0 chr6 60088374 60088501 -129191053 - MIR3 SINE MIR -47 161 16 22 56 0 0 chr6 60088687 60088723 -129190831 + AT_rich Low_complexity Low_complexity 1 36 0 1018 151 19 19 chr6 60089971 60090177 -129189377 - L1 LINE L1 -760 5386 5181 * 3353 169 25 11 chr6 60090172 60090799 -129188755 + L1MA4 LINE L1 5538 6173 -127 709 196 21 21 chr6 60090899 60091093 -129188461 - L1 LINE L1 -772 5374 5181 3877 150 54 10 chr6 60091093 60091813 -129187741 + L1MA4A LINE L1 5538 6294 -9 441 0 0 0 chr6 60092395 60092444 -129187110 + (TA)n Simple_repeat Simple_repeat 1 49 0 214 200 0 0 chr6 60092709 60092749 -129186805 + A-rich Low_complexity Low_complexity 1 40 0 184 114 68 0 chr6 60093771 60093815 -129185739 + CT-rich Low_complexity Low_complexity 5 51 0 253 393 78 14 chr6 60093916 60094135 -129185419 + MIR SINE MIR 20 252 -10 413 369 13 7 chr6 60095041 60095190 -129184364 - L3 LINE CR1 -6 1571 1422 297 343 29 17 chr6 60095206 60095378 -129184176 - LTR33 LTR ERVL 0 521 348 578 281 202 15 chr6 60095491 60095758 -129183796 + L2 LINE L2 582 898 -2416 184 269 58 39 chr6 60095798 60095850 -129183704 + L2 LINE L2 1494 1546 -1768 796 301 32 94 chr6 60095852 60096335 -129183219 + L2 LINE L2 2689 3123 -190 2009 114 3 3 chr6 60096335 60096624 -129182930 + AluSc SINE Alu 1 289 -20 796 301 32 94 chr6 60096624 60096801 -129182753 + L2 LINE L2 3123 3309 -4 199 390 21 0 chr6 60097027 60097122 -129182432 + MER5A DNA MER1_type 53 149 -40 22 70 0 0 chr6 60097889 60097932 -129181622 + AT_rich Low_complexity Low_complexity 1 43 0 5807 116 12 6 chr6 60098182 60100021 -129179533 - L1PA14 LINE L1 -10 6151 4301 505 182 11 0 chr6 60100027 60100115 -129179439 - L1PA14 LINE L1 -2074 4072 3984 * 1737 185 0 9 chr6 60100107 60100431 -129179123 + L1PA14 LINE L1 3673 3993 -2153 348 250 0 0 chr6 60100436 60100516 -129179038 - L1MC4 LINE L1 -1339 6703 6624 2189 84 0 7 chr6 60100517 60100803 -129178751 - AluY SINE Alu -27 284 1 2054 136 7 0 chr6 60100991 60101299 -129178255 - AluSg SINE Alu 0 310 1 180 0 0 0 chr6 60101303 60101323 -129178231 + (T)n Simple_repeat Simple_repeat 1 20 0 1361 272 91 47 chr6 60102066 60102808 -129176746 - L1ME3A LINE L1 -8 6162 5375 1065 145 0 0 chr6 60102808 60102987 -129176567 + (TA)n Simple_repeat Simple_repeat 2 180 0 1361 272 91 47 chr6 60102987 60103104 -129176450 - L1ME3A LINE L1 -795 5375 5265 23 0 0 0 chr6 60103205 60103228 -129176326 + AT_rich Low_complexity Low_complexity 1 23 0 397 50 33 0 chr6 60103261 60103321 -129176233 + (TA)n Simple_repeat Simple_repeat 1 62 0 554 282 108 21 chr6 60103324 60103742 -129175812 - L1ME3A LINE L1 -913 5233 4780 441 289 96 20 chr6 60103771 60104176 -129175378 - L1ME3A LINE L1 -1446 4700 4265 292 228 13 0 chr6 60104176 60104255 -129175299 - MER116 DNA Mariner 0 80 1 768 305 38 35 chr6 60104275 60104303 -129175251 - L1ME3A LINE L1 -1906 4240 4214 2293 136 27 5 chr6 60104303 60104670 -129174884 - THE1C LTR MaLR 0 375 1 768 305 38 35 chr6 60104670 60105248 -129174306 - L1ME3A LINE L1 -1932 4214 3632 479 343 46 0 chr6 60105311 60105594 -129173960 + L1M4 LINE L1 3313 3608 -2538 996 270 141 6 chr6 60105860 60106478 -129173076 + LTR50 LTR ERVL 6 793 -2 303 28 0 0 chr6 60106671 60106707 -129172847 + (TG)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr6 60106706 60106728 -129172826 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 25 51 0 0 chr6 60107217 60107256 -129172298 + AT_rich Low_complexity Low_complexity 1 39 0 661 258 17 11 chr6 60107458 60107636 -129171918 + LTR41 LTR ERVL 1 179 -594 228 323 15 0 chr6 60107960 60108025 -129171529 + LTR41 LTR ERVL 512 577 -196 387 166 42 11 chr6 60108048 60108159 -129171395 + LTR50 LTR ERVL 664 793 -2 294 239 119 101 chr6 60109243 60109402 -129170152 - MER5B DNA MER1_type 0 178 17 926 116 24 216 chr6 60110126 60110418 -129169136 + LTR23 LTR ERV1 1 236 -201 965 171 19 28 chr6 60110519 60110735 -129168819 + LTR23 LTR ERV1 224 437 0 1545 185 57 12 chr6 60110847 60111182 -129168372 - L1MA6 LINE L1 -472 5828 5479 2192 179 29 40 chr6 60111185 60111298 -129168256 + L1MA6 LINE L1 5829 5942 -358 1500 179 33 16 chr6 60111298 60111605 -129167949 + AluJb SINE Alu 1 312 0 2192 179 29 40 chr6 60111605 60111967 -129167587 + L1MA6 LINE L1 5942 6299 -1 2065 176 43 39 chr6 60112029 60112494 -129167060 + LTR24 LTR ERV1 1 467 0 274 289 39 19 chr6 60113494 60113598 -129165956 - 7SK RNA RNA -57 136 31 190 301 84 12 chr6 60113675 60113758 -129165796 - MIR SINE MIR -52 210 122 21 0 0 0 chr6 60114415 60114436 -129165118 + AT_rich Low_complexity Low_complexity 1 21 0 304 268 148 61 chr6 60115194 60115605 -129163949 + L1ME4a LINE L1 5532 5978 -143 270 81 0 0 chr6 60116306 60116343 -129163211 + (T)n Simple_repeat Simple_repeat 1 37 0 29 28 0 0 chr6 60116839 60116875 -129162679 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr6 60117518 60117542 -129162012 + AT_rich Low_complexity Low_complexity 1 24 0 325 310 13 19 chr6 60118516 60118565 -129160989 + MER103 DNA DNA 9 57 -109 396 0 0 0 chr6 60118565 60118609 -129160945 + (TG)n Simple_repeat Simple_repeat 2 45 0 325 310 13 19 chr6 60118609 60118717 -129160837 + MER103 DNA DNA 57 165 -1 6943 187 10 12 chr6 60119197 60121320 -129158234 + L1PA13 LINE L1 4045 6162 -1 1510 147 121 0 chr6 60121909 60122174 -129157380 + AluSx SINE Alu 1 297 -15 461 249 162 27 chr6 60124112 60124297 -129155257 + MIR SINE MIR 47 256 -6 1974 200 65 54 chr6 60124542 60124723 -129154831 - MER67D LTR ERV1 -4 510 333 3293 112 27 0 chr6 60124723 60125207 -129154347 + LOR1a LTR ERV1 1 497 0 1974 200 65 54 chr6 60125207 60125529 -129154025 - MER67D LTR ERV1 -181 333 1 915 254 22 0 chr6 60126769 60126997 -129152557 + L1M3 LINE L1 5573 5805 -378 1145 235 91 37 chr6 60127029 60127382 -129152172 - MLT1B LTR MaLR -18 372 1 366 269 76 38 chr6 60127393 60127631 -129151923 - L1M4 LINE L1 -999 5147 4901 1344 145 124 3 chr6 60127813 60128095 -129151459 - L1MA7 LINE L1 0 6291 5976 632 255 66 41 chr6 60128087 60128479 -129151075 - L1M4 LINE L1 -1416 4730 4329 * 9973 178 33 11 chr6 60128720 60128771 -129150783 + L1PA13 LINE L1 3267 3315 -2848 228 35 0 0 chr6 60128771 60128800 -129150754 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 9973 178 33 11 chr6 60128800 60130154 -129149400 + L1PA13 LINE L1 3315 4637 -1526 272 65 43 0 chr6 60130154 60130200 -129149354 + A-rich Low_complexity Low_complexity 2 49 0 9973 178 33 11 chr6 60130200 60131626 -129147928 + L1PA13 LINE L1 4637 6163 0 393 275 82 26 chr6 60131634 60132023 -129147531 - L1M4 LINE L1 -2561 3585 3175 1910 221 41 12 chr6 60132119 60132603 -129146951 - L1MC3 LINE L1 0 7785 7288 1078 244 67 23 chr6 60132610 60133206 -129146348 - MER76 LTR ERV -6 682 2 959 176 21 125 chr6 60133213 60133492 -129146062 - L1MC3 LINE L1 -499 7286 7037 360 305 27 14 chr6 60133474 60133697 -129145857 - L1M4 LINE L1 -2258 3888 3663 * 295 302 65 44 chr6 60134206 60134344 -129145210 - MIR SINE MIR -63 145 21 1534 196 10 25 chr6 60135118 60135434 -129144120 + MER74C LTR ERVL 158 460 0 2300 268 65 38 chr6 60135439 60136449 -129143105 - L1MDa LINE L1 -5403 1137 34 1206 273 86 35 chr6 60136485 60136991 -129142563 - L1MC4 LINE L1 -1 8041 7497 1810 147 7 14 chr6 60136991 60137305 -129142249 - AluSq SINE Alu 0 312 1 1206 273 86 35 chr6 60137305 60137402 -129142152 - L1MC4 LINE L1 -545 7497 7406 22 0 0 0 chr6 60137731 60137753 -129141801 + AT_rich Low_complexity Low_complexity 1 22 0 465 308 41 50 chr6 60138696 60138917 -129140637 - MLT1L LTR MaLR -200 415 197 189 171 0 0 chr6 60139329 60139364 -129140190 + (CA)n Simple_repeat Simple_repeat 2 36 0 400 188 0 0 chr6 60140192 60140261 -129139293 + MIR SINE MIR 52 120 -142 244 331 62 7 chr6 60140272 60140417 -129139137 + MIR SINE MIR 97 249 -13 201 156 0 0 chr6 60141421 60141453 -129138101 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 391 311 93 14 chr6 60141456 60141669 -129137885 - MIR SINE MIR -10 252 20 727 204 199 6 chr6 60142101 60142282 -129137272 + MER20 DNA MER1_type 1 216 -3 280 307 51 15 chr6 60142501 60142638 -129136916 + L1MC/D LINE L1 5693 5834 -1974 637 232 24 6 chr6 60142714 60142878 -129136676 - L1MD3 LINE L1 -11 7984 7818 793 228 53 0 chr6 60142878 60143049 -129136505 - MER58A DNA MER1_type 0 224 45 4220 241 91 43 chr6 60143067 60144752 -129134802 - L1MC4a LINE L1 -158 7650 5885 442 340 118 36 chr6 60144916 60145333 -129134221 + L1MC/D LINE L1 5301 5751 -411 22 0 0 0 chr6 60147611 60147633 -129131921 + AT_rich Low_complexity Low_complexity 1 22 0 1275 229 21 12 chr6 60149120 60149452 -129130102 + L1MC3 LINE L1 7451 7785 0 271 224 15 0 chr6 60150777 60150844 -129128710 + LTR60 LTR ERV1 1 68 -518 1143 262 26 14 chr6 60150948 60151299 -129128255 + LTR43 LTR ERV1 117 471 -131 253 364 42 17 chr6 60151588 60151706 -129127848 + MER5A DNA MER1_type 43 163 -26 181 114 0 45 chr6 60151830 60151874 -129127680 + (GAAAA)n Simple_repeat Simple_repeat 5 46 0 387 351 52 39 chr6 60151901 60152459 -129127095 + L1MEc LINE L1 100 664 -5732 707 232 92 97 chr6 60153033 60153431 -129126123 - MER66A LTR ERV1 -86 392 97 249 236 28 66 chr6 60153501 60153607 -129125947 - MIR SINE MIR -37 225 124 21 36 0 0 chr6 60154727 60154755 -129124799 + AT_rich Low_complexity Low_complexity 1 28 0 818 261 96 56 chr6 60155485 60155880 -129123674 + MLT1C LTR MaLR 57 467 0 21 36 0 0 chr6 60155995 60156023 -129123531 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr6 60156754 60156784 -129122770 + AT_rich Low_complexity Low_complexity 1 30 0 2293 151 22 35 chr6 60156795 60157258 -129122296 - L1MA4 LINE L1 -16 6284 5828 237 395 34 17 chr6 60157880 60157999 -129121555 + L2 LINE L2 3145 3265 -7 454 173 0 0 chr6 60158041 60158116 -129121438 - AluSg/x SINE Alu -18 292 218 235 173 0 80 chr6 60158275 60158350 -129121204 + A-rich Low_complexity Low_complexity 2 70 0 22 0 0 0 chr6 60158409 60158431 -129121123 + AT_rich Low_complexity Low_complexity 1 22 0 1613 145 0 0 chr6 60158436 60158685 -129120869 + AluSq SINE Alu 6 254 -59 27 62 0 0 chr6 60159000 60159048 -129120506 + AT_rich Low_complexity Low_complexity 1 48 0 580 366 78 0 chr6 60159762 60160134 -129119420 + MLT1J LTR MaLR 6 406 -105 251 106 35 94 chr6 60160233 60160318 -129119236 + A-rich Low_complexity Low_complexity 3 82 0 85 60 0 6 chr6 60160361 60160437 -129119117 + AT_rich Low_complexity Low_complexity 1 76 -89 257 45 0 45 chr6 60160437 60160481 -129119073 + (TAAAA)n Simple_repeat Simple_repeat 4 45 0 85 60 0 6 chr6 60160481 60160570 -129118984 + AT_rich Low_complexity Low_complexity 76 165 0 446 229 0 0 chr6 60162069 60162152 -129117402 + MLT1E1 LTR MaLR 3 85 -569 20177 114 45 5 chr6 60163839 60167653 -129111901 + L1PA7 LINE L1 2251 6090 -64 315 0 0 0 chr6 60167653 60167688 -129111866 + (CA)n Simple_repeat Simple_repeat 2 36 0 20177 114 45 5 chr6 60167688 60167756 -129111798 + L1PA7 LINE L1 6090 6154 0 10502 213 49 17 chr6 60167874 60169651 -129109903 + L1P4 LINE L1 2 1721 -5066 1706 163 42 0 chr6 60169651 60169772 -129109782 + AluSx SINE Alu 1 115 -197 207 0 0 0 chr6 60169772 60169795 -129109759 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1706 163 42 0 chr6 60169795 60169961 -129109593 + AluSx SINE Alu 115 300 -12 10502 213 49 17 chr6 60169961 60170073 -129109481 + L1P4 LINE L1 1721 1828 -4959 2122 103 0 0 chr6 60170073 60170377 -129109177 + AluY SINE Alu 1 304 0 10502 213 49 17 chr6 60170377 60170640 -129108914 + L1P4 LINE L1 1828 2225 -4562 12124 173 10 28 chr6 60170741 60173318 -129106236 + L1P4 LINE L1 3610 6140 -672 285 121 0 0 chr6 60173324 60173379 -129106175 + L1PA14 LINE L1 6109 6163 -2 348 270 20 20 chr6 60173682 60173782 -129105772 + MER5B DNA MER1_type 1 100 -78 1967 114 3 24 chr6 60173849 60174147 -129105407 - AluSx SINE Alu -20 292 1 396 0 0 0 chr6 60174274 60174318 -129105236 + (TG)n Simple_repeat Simple_repeat 1 44 0 35 0 0 0 chr6 60174518 60174553 -129105001 + AT_rich Low_complexity Low_complexity 1 35 0 326 167 56 14 chr6 60174572 60174644 -129104910 + MER116 DNA Mariner 1 75 -5 213 173 27 27 chr6 60174895 60174970 -129104584 + GA-rich Low_complexity Low_complexity 2 76 0 21 95 0 0 chr6 60175170 60175233 -129104321 + AT_rich Low_complexity Low_complexity 1 63 0 2710 106 0 5 chr6 60175749 60176126 -129103428 + THE1C LTR MaLR 1 375 0 2193 103 10 6 chr6 60177023 60177335 -129102219 - AluSp SINE Alu 0 313 1 200 330 107 19 chr6 60177342 60177445 -129102109 - L2 LINE L2 0 3272 3161 231 234 0 0 chr6 60177944 60177991 -129101563 + L2 LINE L2 3261 3307 -6 23 78 0 0 chr6 60178199 60178250 -129101304 + AT_rich Low_complexity Low_complexity 1 51 0 282 338 56 60 chr6 60179683 60179917 -129099637 + L2 LINE L2 3081 3313 0 260 304 200 8 chr6 60180588 60180713 -129098841 + MER5A DNA MER1_type 38 186 -3 712 131 41 21 chr6 60182195 60182340 -129097214 - L1MA8 LINE L1 -3 6288 6141 1227 146 32 20 chr6 60182340 60182586 -129096968 + L1MA8 LINE L1 5908 6156 -135 627 280 6 6 chr6 60183951 60184126 -129095428 - MER5B DNA MER1_type -3 175 1 2455 130 14 3 chr6 60185358 60185728 -129093826 - THE1C LTR MaLR 0 375 2 1622 229 30 0 chr6 60185978 60186315 -129093239 + MLT1D LTR MaLR 3 349 -156 283 321 0 0 chr6 60186341 60186425 -129093129 - MIR SINE MIR -17 245 162 296 290 37 47 chr6 60186527 60186634 -129092920 + MER115 DNA AcHobo 119 224 -469 822 273 46 21 chr6 60186684 60186922 -129092632 - MLT1J LTR MaLR -93 418 175 192 125 0 0 chr6 60187070 60187102 -129092452 + (TG)n Simple_repeat Simple_repeat 2 33 0 2072 137 0 3 chr6 60187763 60188069 -129091485 - AluSg SINE Alu -5 305 1 269 270 98 77 chr6 60188069 60188539 -129091015 - L1MEd LINE L1 -4959 1160 681 808 291 18 4 chr6 60189305 60189532 -129090022 + MIR SINE MIR 32 261 -1 22 35 0 0 chr6 60191034 60191063 -129088491 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr6 60191708 60191730 -129087824 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 60192170 60192198 -129087356 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr6 60192311 60192340 -129087214 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 2009 133 3 0 chr6 60192342 60192628 -129086926 - AluSx SINE Alu -21 291 5 263 286 12 0 chr6 60192699 60192783 -129086771 - L1MC4 LINE L1 -145 7897 7813 1219 267 93 0 chr6 60192785 60193182 -129086372 - L1MC4 LINE L1 -288 7754 7321 222 386 21 29 chr6 60193215 60193355 -129086199 - MIR3 SINE MIR -58 150 12 181 336 125 19 chr6 60194286 60194390 -129085164 - L2 LINE L2 -257 3056 2942 291 253 58 0 chr6 60194456 60194543 -129085011 - MER45A DNA AcHobo 0 178 87 1302 189 14 43 chr6 60194543 60194824 -129084730 + AluJb SINE Alu 18 290 -22 1743 66 0 0 chr6 60194831 60195097 -129084457 + AluY SINE Alu 73 338 0 469 234 63 0 chr6 60195111 60195222 -129084332 - MER45A DNA AcHobo -60 118 1 261 0 0 0 chr6 60195519 60195548 -129084006 + (CA)n Simple_repeat Simple_repeat 2 30 0 1216 187 27 5 chr6 60196049 60196268 -129083286 - MLT1A1 LTR MaLR 0 365 142 2905 124 178 45 chr6 60196285 60196880 -129082674 - MER4D LTR ERV1 -21 882 209 647 165 9 9 chr6 60196875 60196990 -129082564 - MLT1A1 LTR MaLR -250 115 1 * 209 193 0 157 chr6 60197047 60197130 -129082424 + MER5B DNA MER1_type 60 129 -49 417 271 7 43 chr6 60197255 60197395 -129082159 - L2 LINE L2 -14 3299 3165 1300 113 5 5 chr6 60197889 60198092 -129081462 + L1PB1 LINE L1 5944 6146 -5 13001 113 8 6 chr6 60198170 60200971 -129078583 - L1PA8 LINE L1 0 6172 3384 1990 138 0 35 chr6 60200971 60201289 -129078265 - AluSx SINE Alu -5 307 1 14671 149 22 107 chr6 60201289 60202259 -129077295 - L1PA8 LINE L1 -2843 3303 2253 186 43 0 0 chr6 60202259 60202282 -129077272 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 14671 149 22 107 chr6 60202282 60204515 -129075039 - L1PA8 LINE L1 -3893 2253 433 468 0 0 0 chr6 60204515 60204567 -129074987 + (CA)n Simple_repeat Simple_repeat 2 53 0 14671 149 22 107 chr6 60204567 60204957 -129074597 - L1PA8 LINE L1 -5713 433 12 393 268 18 9 chr6 60206291 60206403 -129073151 - MER81 DNA DNA 0 114 2 308 111 0 0 chr6 60206573 60206618 -129072936 - MER58 DNA MER1_type -2 2418 2374 441 139 76 0 chr6 60207056 60207135 -129072419 - LTR40a LTR ERVL -373 146 62 21 0 0 0 chr6 60208475 60208496 -129071058 + AT_rich Low_complexity Low_complexity 1 21 0 296 290 50 10 chr6 60208499 60208599 -129070955 - L2 LINE L2 -18 3295 3192 182 339 31 15 chr6 60208637 60208702 -129070852 - MIR SINE MIR -177 85 20 1207 259 140 21 chr6 60209248 60209770 -129069784 + MLT1E2 LTR MaLR 1 551 -42 24 0 0 0 chr6 60210384 60210408 -129069146 + AT_rich Low_complexity Low_complexity 1 24 0 457 301 57 84 chr6 60210761 60211057 -129068497 - MLT1J LTR MaLR -11 500 213 2146 115 26 7 chr6 60211111 60211415 -129068139 + AluSg SINE Alu 1 310 0 459 355 58 40 chr6 60211819 60212166 -129067388 + MLT1K LTR MaLR 74 426 -162 241 280 40 0 chr6 60213540 60213615 -129065939 - L1MEd LINE L1 -5451 668 591 810 293 62 66 chr6 60213649 60214134 -129065420 - L1MEd LINE L1 -5616 503 21 215 275 99 62 chr6 60214283 60214494 -129065060 + L2 LINE L2 467 685 -2629 310 115 0 0 chr6 60214607 60214659 -129064895 - L1PB4 LINE L1 -2 6154 6103 20519 185 41 24 chr6 60215258 60222671 -129056883 - L1MA1 LINE L1 -7 7714 16 1566 198 52 54 chr6 60223117 60223561 -129055993 - LTR47B LTR ERVL 0 443 1 296 289 54 42 chr6 60223683 60223849 -129055705 + L2 LINE L2 3141 3308 -5 27 49 0 0 chr6 60224735 60224776 -129054778 + AT_rich Low_complexity Low_complexity 1 41 0 2191 123 3 0 chr6 60224841 60225134 -129054420 - AluSx SINE Alu -18 294 1 227 297 78 55 chr6 60225351 60225479 -129054075 - L2 LINE L2 -25 3247 3117 1820 261 105 2 chr6 60226488 60226966 -129052588 - MLT1E LTR MaLR -32 561 35 3420 34 0 2 chr6 60227088 60227502 -129052052 - L1PA4 LINE L1 -3 6152 5740 2129 56 23 0 chr6 60227502 60227805 -129051749 + L1P LINE L1 3136 3445 -2701 2227 81 7 17 chr6 60227805 60228100 -129051454 - AluY SINE Alu -5 306 15 386 313 15 70 chr6 60228100 60228301 -129051253 - MIR SINE MIR -33 229 40 1114 291 52 35 chr6 60228328 60228844 -129050710 - L1ME3A LINE L1 -4 6166 5642 256 252 89 22 chr6 60228944 60229079 -129050475 - L1ME3A LINE L1 -2276 5509 5366 392 256 81 57 chr6 60229162 60229373 -129050181 - L1ME3A LINE L1 -920 5226 5011 367 303 35 0 chr6 60229554 60229696 -129049858 + L1MEc LINE L1 1300 1446 -4950 289 297 33 0 chr6 60230776 60230867 -129048687 - MIR SINE MIR -73 189 96 890 210 6 0 chr6 60231149 60231311 -129048243 - FRAM SINE Alu -3 163 1 251 301 60 38 chr6 60231800 60231933 -129047621 - MIR SINE MIR -71 191 56 1171 298 109 19 chr6 60232287 60233023 -129046531 - L2 LINE L2 0 3313 2510 277 198 163 12 chr6 60234058 60234144 -129045410 + MIR SINE MIR 97 195 -67 1569 242 38 64 chr6 60234322 60234856 -129044698 + MLT2B1 LTR ERVL 1 520 0 1659 186 3 7 chr6 60234969 60235264 -129044290 + AluJo SINE Alu 1 294 -18 2907 129 59 8 chr6 60236174 60236646 -129042908 + LOR1a LTR ERV1 2 497 0 23 54 0 0 chr6 60237247 60237284 -129042270 + AT_rich Low_complexity Low_complexity 1 37 0 2420 122 22 5 chr6 60238130 60238499 -129041055 - THE1C LTR MaLR 0 375 1 2106 221 33 2 chr6 60238746 60239234 -129040320 + MLT1D LTR MaLR 3 505 0 287 245 82 20 chr6 60239747 60239845 -129039709 - L2 LINE L2 0 3272 3169 851 90 52 0 chr6 60240419 60240553 -129039001 - L1MB2 LINE L1 -2 6169 6029 333 0 0 0 chr6 60240844 60240881 -129038673 + (TG)n Simple_repeat Simple_repeat 2 38 0 510 267 23 23 chr6 60241162 60241338 -129038216 + MER5B DNA MER1_type 1 176 -2 1212 195 17 67 chr6 60241790 60242088 -129037466 + MLT1A1 LTR MaLR 83 365 0 718 254 80 45 chr6 60242088 60242359 -129037195 + MLT2C2 LTR ERVL 144 429 -35 213 39 0 0 chr6 60242359 60242385 -129037169 + (CA)n Simple_repeat Simple_repeat 2 27 0 718 254 80 45 chr6 60242385 60242423 -129037131 + MLT2C2 LTR ERVL 429 464 0 342 0 0 0 chr6 60243655 60243693 -129035861 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2332 55 0 10 chr6 60243695 60243986 -129035568 - AluY SINE Alu -23 288 1 196 310 42 0 chr6 60244452 60244523 -129035031 + L2 LINE L2 1492 1565 -1749 188 273 0 0 chr6 60244513 60244557 -129034997 + L2 LINE L2 3229 3272 0 * 321 372 110 28 chr6 60244616 60245145 -129034409 + L2 LINE L2 1608 2179 -1135 189 0 0 0 chr6 60245206 60245227 -129034327 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 462 49 0 0 chr6 60245242 60245303 -129034251 - L1PB3 LINE L1 -2 6152 6092 721 232 18 24 chr6 60245321 60245489 -129034065 - MER20 DNA MER1_type -52 167 1 355 365 181 21 chr6 60245565 60246196 -129033358 + L2 LINE L2 2211 2942 -372 1539 251 40 34 chr6 60246262 60246764 -129032790 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chr6 60248404 60248425 -129031129 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 60248466 60248497 -129031057 + AT_rich Low_complexity Low_complexity 1 31 0 241 206 151 0 chr6 60249679 60249752 -129029802 + L1MD3 LINE L1 7912 7995 0 1846 56 0 0 chr6 60249964 60250198 -129029356 - L1PA4 LINE L1 -127 6028 5795 246 27 27 0 chr6 60250184 60250221 -129029333 + L1PA2 LINE L1 6112 6149 -6 * 26 0 0 0 chr6 60250298 60250324 -129029230 + AT_rich Low_complexity Low_complexity 1 26 0 364 319 102 28 chr6 60251049 60251184 -129028370 - MIR SINE MIR -12 250 92 1994 119 7 3 chr6 60251184 60251469 -129028085 + AluSp SINE Alu 1 286 -27 364 319 102 28 chr6 60251469 60251549 -129028005 - MIR SINE MIR -170 92 19 1445 204 3 39 chr6 60251698 60252006 -129027548 + AluJb SINE Alu 1 297 -15 405 167 0 0 chr6 60252103 60252169 -129027385 + LTR41 LTR ERVL 105 170 -603 270 359 52 49 chr6 60252542 60252890 -129026664 - L2 LINE L2 -1021 2293 1945 569 303 284 18 chr6 60252926 60253337 -129026217 - L2 LINE L2 -1555 1759 1458 306 0 0 0 chr6 60253337 60253371 -129026183 + (TG)n Simple_repeat Simple_repeat 1 34 0 569 303 284 18 chr6 60253371 60253781 -129025773 - L2 LINE L2 -1856 1458 720 2203 161 88 2 chr6 60255553 60255951 -129023603 - MSTB1 LTR MaLR 0 432 1 602 379 50 19 chr6 60255996 60256460 -129023094 + L2 LINE L2 2380 2857 -457 228 172 0 0 chr6 60256652 60256710 -129022844 + (TA)n Simple_repeat Simple_repeat 2 59 0 23 33 0 0 chr6 60257481 60257511 -129022043 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr6 60258140 60258173 -129021381 + AT_rich Low_complexity Low_complexity 1 33 0 262 309 101 0 chr6 60258203 60258342 -129021212 + MIR SINE MIR 110 262 0 491 324 78 57 chr6 60258561 60258947 -129020607 + MLT1K LTR MaLR 84 477 -111 291 161 36 0 chr6 60258951 60259007 -129020547 + MLT1A1 LTR MaLR 3 60 -314 1757 185 47 6 chr6 60259008 60259349 -129020205 + MLT1A1 LTR MaLR 11 365 0 437 237 101 21 chr6 60260185 60260500 -129019054 - L1ME3A LINE L1 -9 6161 5873 899 211 48 22 chr6 60260500 60260727 -129018827 + MER46A DNA MER2_type 2 234 -2 437 237 101 21 chr6 60260727 60261086 -129018468 - L1ME3A LINE L1 -297 5873 5327 285 104 26 143 chr6 60261343 60261420 -129018134 + MADE1 DNA Mariner 13 80 0 540 333 10 0 chr6 60261610 60261802 -129017752 - MIR SINE MIR -16 246 53 2321 62 0 26 chr6 60261842 60262186 -129017368 + AluY SINE Alu 6 311 0 346 310 21 0 chr6 60262299 60262444 -129017110 + L2 LINE L2 1902 2049 -1265 432 0 0 0 chr6 60264346 60264394 -129015160 + (TA)n Simple_repeat Simple_repeat 1 48 0 22 56 0 0 chr6 60264451 60264487 -129015067 + AT_rich Low_complexity Low_complexity 1 36 0 789 241 99 32 chr6 60265473 60265715 -129013839 - MER114 LTR ERV 0 648 371 2403 76 0 0 chr6 60265715 60266018 -129013536 - AluY SINE Alu -8 303 1 789 241 99 32 chr6 60266018 60266148 -129013406 - MER114 LTR ERV -277 371 251 4103 181 35 34 chr6 60266342 60267273 -129012281 - L1MA10 LINE L1 -29 6305 5374 4516 25 0 0 chr6 60268456 60269022 -129010532 + L1PA4 LINE L1 5612 6177 0 225 333 0 0 chr6 60269072 60269129 -129010425 - MIR SINE MIR -119 89 33 198 167 0 0 chr6 60270550 60270586 -129008968 + (CATA)n Simple_repeat Simple_repeat 3 38 0 276 383 55 8 chr6 60271357 60271485 -129008069 - L2 LINE L2 0 3272 3139 2221 108 7 7 chr6 60272500 60272805 -129006749 - AluSx SINE Alu -7 305 1 2585 42 0 10 chr6 60274019 60274331 -129005223 + AluY SINE Alu 1 309 -2 204 97 0 0 chr6 60274419 60274450 -129005104 + (CA)n Simple_repeat Simple_repeat 1 31 0 2019 123 0 47 chr6 60275841 60276159 -129003395 - AluSx SINE Alu -9 303 1 2073 133 16 3 chr6 60276367 60276676 -129002878 - AluSq SINE Alu 0 313 1 216 0 0 0 chr6 60276676 60276700 -129002854 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1513 145 7 73 chr6 60276708 60276997 -129002557 - AluSx SINE Alu -38 274 5 3182 21 0 8 chr6 60278144 60278525 -129001029 + L1PA4 LINE L1 5776 6153 -2 819 119 0 0 chr6 60279126 60279252 -129000302 + (TA)n Simple_repeat Simple_repeat 1 126 0 189 0 0 0 chr6 60279251 60279272 -129000282 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 24 32 0 0 chr6 60280290 60280321 -128999233 + AT_rich Low_complexity Low_complexity 1 31 0 1462 104 26 26 chr6 60280392 60280622 -128998932 + MER30 DNA MER1_type 1 230 0 4184 147 14 26 chr6 60280748 60281474 -128998080 + LTR62 LTR ERVK 1 717 -2 181 363 75 0 chr6 60282018 60282098 -128997456 + MIR SINE MIR 58 143 -65 29 47 0 0 chr6 60282235 60282278 -128997276 + AT_rich Low_complexity Low_complexity 1 43 0 1196 258 74 30 chr6 60283124 60283624 -128995930 - L1ME3A LINE L1 0 6170 5649 314 236 28 0 chr6 60283628 60283700 -128995854 - MER116 DNA Mariner -6 74 1 653 302 74 23 chr6 60283716 60284049 -128995505 - L1ME3A LINE L1 -543 5627 5313 252 100 0 0 chr6 60284049 60284089 -128995465 + (TG)n Simple_repeat Simple_repeat 2 41 0 653 302 74 23 chr6 60284089 60284507 -128995047 - L1ME3A LINE L1 -857 5313 4836 449 318 83 12 chr6 60284513 60284765 -128994789 - MARNA DNA Mariner -177 409 140 1354 79 0 11 chr6 60284767 60284956 -128994598 + L1PA8 LINE L1 5982 6168 -4 286 252 17 35 chr6 60286306 60286421 -128993133 + L1M4 LINE L1 5155 5267 -879 4250 197 80 109 chr6 60286880 60287069 -128992485 - L1MC3 LINE L1 -9 7776 7583 1700 178 72 41 chr6 60287069 60287485 -128992069 - MSTB1 LTR MaLR -3 429 1 4250 197 80 109 chr6 60287485 60287871 -128991683 - L1MC3 LINE L1 -202 7583 7187 278 304 0 0 chr6 60287871 60287950 -128991604 - MLT1F1 LTR MaLR -444 123 45 4250 197 80 109 chr6 60287950 60288812 -128990742 - L1MC3 LINE L1 -598 7187 6305 872 194 5 0 chr6 60288828 60289014 -128990540 - L1MA5 LINE L1 0 6300 6114 292 182 0 0 chr6 60289015 60289070 -128990484 - MER41B LTR ERV1 -580 55 1 538 300 130 15 chr6 60289084 60289284 -128990270 + L1PA10 LINE L1 1036 1258 -5529 17197 184 15 21 chr6 60289288 60291691 -128987863 + L1PA10 LINE L1 1397 3812 -3000 342 0 0 0 chr6 60291691 60291729 -128987825 + (CA)n Simple_repeat Simple_repeat 2 39 0 17197 184 15 21 chr6 60291729 60294076 -128985478 + L1PA10 LINE L1 3812 6158 -654 1657 114 84 0 chr6 60294076 60294338 -128985216 + L1PA10 LINE L1 6532 6815 -4 17197 184 15 21 chr6 60294338 60294386 -128985168 + L1PA10 LINE L1 6158 6205 -607 25 65 0 0 chr6 60294419 60294465 -128985089 + AT_rich Low_complexity Low_complexity 1 46 0 46 45 0 0 chr6 60294826 60294893 -128984661 + AT_rich Low_complexity Low_complexity 1 67 0 22 0 0 0 chr6 60294983 60295005 -128984549 + AT_rich Low_complexity Low_complexity 1 22 0 210 288 81 56 chr6 60296262 60296460 -128983094 + L2 LINE L2 1750 1952 -1362 42426 36 23 1 chr6 60296480 60302497 -128977057 + L1PA3 LINE L1 1 6152 -3 1469 177 99 30 chr6 60302508 60302842 -128976712 - L1MA7 LINE L1 -152 6139 5783 386 197 28 0 chr6 60302844 60302915 -128976639 - Tigger5 DNA MER2_type -1 2322 2250 348 263 0 0 chr6 60302991 60303067 -128976487 - Tigger5 DNA MER2_type -2244 79 4 2398 173 9 0 chr6 60303067 60303488 -128976066 - L1MA7 LINE L1 -505 5786 5362 321 261 48 0 chr6 60303488 60303571 -128975983 + MIR3 SINE MIR 74 160 -48 203 171 0 0 chr6 60303576 60303617 -128975937 + T-rich Low_complexity Low_complexity 1 41 0 452 309 72 7 chr6 60303627 60303779 -128975775 - MER5B DNA MER1_type -16 162 1 10438 49 6 46 chr6 60304047 60305480 -128974074 - SVA Other Other -1 1385 10 24 0 0 0 chr6 60305740 60305764 -128973790 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr6 60305823 60305859 -128973695 + AT_rich Low_complexity Low_complexity 1 36 0 2018 178 89 0 chr6 60306026 60306441 -128973113 - LTR47A LTR ERVL 0 452 1 1962 121 11 0 chr6 60307086 60307366 -128972188 + AluSx SINE Alu 1 283 -29 378 42 0 0 chr6 60307367 60307415 -128972139 + (CA)n Simple_repeat Simple_repeat 1 48 0 807 304 110 16 chr6 60308375 60309020 -128970534 + L1M4 LINE L1 4496 5201 -945 1302 151 38 0 chr6 60309521 60309733 -128969821 + AluJb SINE Alu 64 283 -29 1115 129 104 71 chr6 60309743 60309983 -128969571 - AluSx SINE Alu -64 248 1 24 53 0 0 chr6 60310066 60310104 -128969450 + AT_rich Low_complexity Low_complexity 1 38 0 293 145 16 0 chr6 60310701 60310763 -128968791 + GA-rich Low_complexity Low_complexity 1 63 0 1348 113 0 5 chr6 60311034 60311246 -128968308 - L1MA3 LINE L1 0 6305 6095 365 340 6 13 chr6 60311358 60311517 -128968037 + CT-rich Low_complexity Low_complexity 6 163 0 3326 253 59 56 chr6 60312794 60312864 -128966690 + L1MCa LINE L1 81 149 -6415 183 42 0 0 chr6 60312864 60312888 -128966666 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3326 253 59 56 chr6 60312888 60314245 -128965309 + L1MCa LINE L1 149 1501 -5063 953 32 0 24 chr6 60314245 60314371 -128965183 + L1PA4 LINE L1 6030 6152 -3 3326 253 59 56 chr6 60314371 60315624 -128963930 + L1MCa LINE L1 1501 2853 -3711 183 42 0 0 chr6 60315635 60315659 -128963895 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2246 123 15 0 chr6 60315661 60316002 -128963552 - L1PB3 LINE L1 -7 6147 5802 228 163 0 0 chr6 60316021 60316064 -128963490 + L1M4 LINE L1 4804 4846 -1300 7286 209 41 17 chr6 60316078 60317874 -128961680 - L1 LINE L1 -1279 4867 3029 2009 108 13 29 chr6 60317879 60318195 -128961359 - L1PB2 LINE L1 -1 6150 5840 6443 212 41 50 chr6 60318200 60319461 -128960093 - L1PBb LINE L1 -2190 4013 2742 248 185 37 0 chr6 60319461 60319515 -128960039 + MADE1 DNA Mariner 25 80 0 6443 212 41 50 chr6 60319515 60322323 -128957231 - L1PBb LINE L1 -3461 2742 1 * 6681 218 53 9 chr6 60322299 60323856 -128955698 - L1PBa LINE L1 -5235 1628 3 1792 286 28 96 chr6 60323878 60325236 -128954318 - L1P LINE L1 -3113 3033 1768 246 286 10 0 chr6 60325249 60325347 -128954207 + L1MC1 LINE L1 2425 2523 -3623 4060 256 75 19 chr6 60325353 60327177 -128952377 + L1MC1 LINE L1 3077 5008 -1138 341 214 22 34 chr6 60327172 60327261 -128952293 + L1MC1 LINE L1 5965 6052 -281 * 594 238 154 0 chr6 60327274 60327417 -128952137 - LTR42 LTR ERVL -12 483 319 278 197 16 0 chr6 60327418 60327479 -128952075 + L1MC3 LINE L1 6262 6323 -1462 * 1187 181 4 13 chr6 60327470 60327707 -128951847 + L1MA4 LINE L1 5892 6126 -174 6209 179 22 34 chr6 60327722 60329902 -128949652 - L1PA13 LINE L1 -9 6154 3989 627 266 94 15 chr6 60330482 60330685 -128948869 + MIR SINE MIR 37 255 -7 206 233 0 0 chr6 60330688 60330731 -128948823 + (CTA)n Simple_repeat Simple_repeat 1 43 0 207 0 0 0 chr6 60330948 60330971 -128948583 + (TTTAA)n Simple_repeat Simple_repeat 5 27 0 2030 304 127 23 chr6 60332713 60334012 -128945542 + L2 LINE L2 1891 3313 0 2032 150 114 10 chr6 60335338 60335724 -128943830 - MSTA LTR MaLR 0 428 3 522 70 0 0 chr6 60336299 60336370 -128943184 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 358 93 0 0 chr6 60337144 60337198 -128942356 - MADE1 DNA Mariner 0 80 27 1311 254 141 20 chr6 60337956 60338888 -128940666 - L1ME2 LINE L1 -13 6220 5175 * 1768 255 97 42 chr6 60338885 60340084 -128939470 - L1ME2 LINE L1 -1280 4935 3529 2221 106 0 0 chr6 60340084 60340386 -128939168 + AluY SINE Alu 1 302 -9 1768 255 97 42 chr6 60340386 60340890 -128938664 - L1ME2 LINE L1 -2686 3529 3054 * 1975 283 87 33 chr6 60340878 60341885 -128937669 - L1ME2 LINE L1 -5300 1096 35 27 0 0 0 chr6 60342015 60342042 -128937512 + AT_rich Low_complexity Low_complexity 1 27 0 201 39 0 0 chr6 60342213 60342239 -128937315 + (TC)n Simple_repeat Simple_repeat 2 27 0 240 35 0 0 chr6 60342260 60342289 -128937265 + (TG)n Simple_repeat Simple_repeat 2 30 0 29 0 0 0 chr6 60342367 60342396 -128937158 + AT_rich Low_complexity Low_complexity 1 29 0 273 272 87 0 chr6 60342561 60342653 -128936901 - MLT1H LTR MaLR -11 538 439 186 414 19 0 chr6 60342983 60343087 -128936467 + L2 LINE L2 2705 2810 -504 1728 151 60 0 chr6 60343190 60343475 -128936079 + AluJb SINE Alu 6 307 -5 36 0 0 0 chr6 60343791 60343827 -128935727 + AT_rich Low_complexity Low_complexity 1 36 0 283 367 101 6 chr6 60343843 60344001 -128935553 - MIR SINE MIR -18 244 72 653 223 6 8 chr6 60344142 60344316 -128935238 - MLT1E1 LTR MaLR 0 654 444 352 311 10 82 chr6 60344345 60344384 -128935170 + L1MC4a LINE L1 5696 5736 -2072 2151 123 3 0 chr6 60344384 60344685 -128934869 + AluSp SINE Alu 1 302 -11 352 311 10 82 chr6 60344685 60344851 -128934703 + L1MC4a LINE L1 5736 5886 -1922 2360 11 104 0 chr6 60345060 60345339 -128934215 + AluYb8 SINE Alu 1 308 -10 1734 181 3 3 chr6 60346426 60346724 -128932830 + AluJb SINE Alu 1 298 -14 540 0 0 0 chr6 60346728 60346788 -128932766 + (TA)n Simple_repeat Simple_repeat 1 60 0 1795 270 57 3 chr6 60347218 60347742 -128931812 + MLT1H1 LTR MaLR 1 595 0 243 146 0 0 chr6 60348447 60348488 -128931066 + (TC)n Simple_repeat Simple_repeat 1 41 0 281 311 23 23 chr6 60348492 60348624 -128930930 + LTR16C LTR ERVL 360 491 0 25 31 0 0 chr6 60349058 60349090 -128930464 + AT_rich Low_complexity Low_complexity 1 32 0 957 92 4 228 chr6 60349684 60349965 -128929589 - L1MA8 LINE L1 -634 5657 5440 * 2578 153 0 20 chr6 60349958 60350402 -128929152 + L1MA8 LINE L1 5680 6114 -177 767 185 39 0 chr6 60350466 60350644 -128928910 + L1MA8 LINE L1 6101 6285 -6 1177 268 83 48 chr6 60351836 60352235 -128927319 - MLT1E LTR MaLR 0 593 181 339 65 0 0 chr6 60352281 60352327 -128927227 + (CA)n Simple_repeat Simple_repeat 1 46 0 623 311 72 0 chr6 60352598 60352807 -128926747 - MIR SINE MIR -21 241 18 199 347 129 24 chr6 60352867 60352991 -128926563 + MIR3 SINE MIR 66 202 -6 196 283 179 9 chr6 60353286 60353392 -128926162 + MIR SINE MIR 29 152 -110 360 252 0 0 chr6 60354006 60354129 -128925425 + (CA)n Simple_repeat Simple_repeat 1 123 0 296 313 45 0 chr6 60354408 60354520 -128925034 - MER20B DNA MER1_type -602 181 65 1951 121 0 0 chr6 60354913 60355178 -128924376 - AluSg SINE Alu -45 265 1 1587 168 14 0 chr6 60355522 60355807 -128923747 - L1MC1 LINE L1 -6 6327 6039 3841 105 38 68 chr6 60355807 60356493 -128923061 - MER52C LTR ERV1 0 1278 614 2199 190 69 13 chr6 60356493 60356542 -128923012 - L1MC1 LINE L1 -394 5939 5894 2106 107 0 17 chr6 60356542 60356860 -128922694 + AluSx SINE Alu 1 313 0 2199 190 69 13 chr6 60356860 60357273 -128922281 - L1MC1 LINE L1 -439 5894 5450 332 373 93 42 chr6 60357744 60358293 -128921261 + L2 LINE L2 2282 2858 -456 1559 274 18 10 chr6 60358356 60358743 -128920811 - MSTD LTR MaLR 0 396 7 182 37 37 0 chr6 60359140 60359167 -128920387 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 207 0 0 0 chr6 60359416 60359439 -128920115 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 182 343 15 15 chr6 60359639 60359706 -128919848 + MIR SINE MIR 49 115 -147 347 250 116 0 chr6 60359741 60359853 -128919701 + L2 LINE L2 3186 3310 -3 213 39 0 0 chr6 60362042 60362068 -128917486 + (CA)n Simple_repeat Simple_repeat 2 27 0 303 28 0 0 chr6 60362097 60362133 -128917421 + (CA)n Simple_repeat Simple_repeat 2 37 0 387 0 0 0 chr6 60364016 60364059 -128915495 + (CA)n Simple_repeat Simple_repeat 2 44 0 626 295 160 25 chr6 60364332 60364824 -128914730 + MLT1G LTR MaLR 28 590 0 1936 181 3 19 chr6 60364942 60365313 -128914241 + MLT1A1 LTR MaLR 1 365 0 274 316 26 17 chr6 60365462 60365579 -128913975 + MLT1-int LTR MaLR 397 514 -857 2039 127 56 31 chr6 60366362 60366717 -128912837 - THE1B LTR MaLR 0 364 1 359 324 149 32 chr6 60367061 60367404 -128912150 + HAL1 LINE L1 1171 1553 -954 610 100 22 0 chr6 60367963 60368053 -128911501 + AluSg/x SINE Alu 204 295 -14 23 33 0 0 chr6 60368288 60368318 -128911236 + AT_rich Low_complexity Low_complexity 1 30 0 27 73 0 0 chr6 60368336 60368391 -128911163 + AT_rich Low_complexity Low_complexity 1 55 0 206 32 32 0 chr6 60368394 60368425 -128911129 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1927 108 0 28 chr6 60368428 60368716 -128910838 - AluSg SINE Alu -30 280 1 247 355 91 0 chr6 60369423 60369533 -128910021 - MIR SINE MIR -111 151 32 6448 83 15 15 chr6 60369826 60371178 -128908376 - L1PA10 LINE L1 -4 6164 4810 4443 195 7 84 chr6 60371890 60372928 -128906626 + MSTB-int LTR MaLR 694 1651 0 2127 193 39 0 chr6 60372928 60373338 -128906216 + MSTB LTR MaLR 1 426 0 3490 187 43 2 chr6 60373393 60374015 -128905539 - L1MA6 LINE L1 -359 5941 5346 243 0 0 0 chr6 60374015 60374042 -128905512 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3490 187 43 2 chr6 60374042 60374753 -128904801 - L1MA6 LINE L1 -954 5346 4564 1994 205 51 3 chr6 60374753 60375124 -128904430 - MSTB LTR MaLR -37 389 1 8486 207 32 25 chr6 60375124 60377252 -128902302 - L1MA6 LINE L1 -1581 4565 2423 238 222 111 17 chr6 60378322 60378439 -128901115 - L1ME4a LINE L1 -42 6079 5952 287 370 100 17 chr6 60379639 60379939 -128899615 + L2 LINE L2 2181 2505 -809 843 146 108 155 chr6 60380100 60380416 -128899138 - AluJb SINE Alu 0 302 2 1252 94 94 0 chr6 60380441 60380622 -128898932 - AluY SINE Alu -112 199 2 189 191 71 0 chr6 60380660 60380702 -128898852 + L2 LINE L2 2702 2746 -568 332 366 30 0 chr6 60381096 60381197 -128898357 + L2 LINE L2 3164 3267 -5 2413 67 0 0 chr6 60381594 60381892 -128897662 + AluY SINE Alu 1 298 -13 21 0 0 0 chr6 60382796 60382817 -128896737 + AT_rich Low_complexity Low_complexity 1 21 0 5484 196 53 4 chr6 60382902 60384318 -128895236 - L1PB1 LINE L1 -2747 4115 2630 8863 179 10 8 chr6 60384319 60386340 -128893214 + L1PB1 LINE L1 4131 6147 -720 3660 100 4 4 chr6 60386340 60386851 -128892703 - MER9 LTR ERVK 0 511 1 8863 179 10 8 chr6 60386851 60387195 -128892359 + L1PB1 LINE L1 6147 6489 -378 261 0 0 0 chr6 60387195 60387224 -128892330 + (TA)n Simple_repeat Simple_repeat 1 29 0 8863 179 10 8 chr6 60387224 60387587 -128891967 + L1PB1 LINE L1 6489 6866 -1 21 0 0 0 chr6 60387587 60387608 -128891946 + AT_rich Low_complexity Low_complexity 1 21 0 3205 101 11 0 chr6 60387608 60388082 -128891472 - L1MA1 LINE L1 -6 6296 5818 250 319 59 49 chr6 60388221 60388525 -128891029 + MLT1K LTR MaLR 263 569 -19 278 315 60 46 chr6 60390028 60390244 -128889310 - L2 LINE L2 0 3313 3095 209 266 75 0 chr6 60390635 60390729 -128888825 - L2 LINE L2 -1282 2032 1932 23 0 0 0 chr6 60390891 60390914 -128888640 + AT_rich Low_complexity Low_complexity 1 23 0 278 343 40 40 chr6 60391004 60391179 -128888375 + MIR SINE MIR 32 206 -56 21 0 0 0 chr6 60392077 60392098 -128887456 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr6 60392398 60392433 -128887121 + AT_rich Low_complexity Low_complexity 1 35 0 1939 87 22 0 chr6 60392639 60392914 -128886640 - L1PA13 LINE L1 -3 6160 5880 1378 244 86 63 chr6 60394151 60394627 -128884927 + MLT1D LTR MaLR 1 487 -18 1977 130 32 35 chr6 60394761 60395137 -128884417 - THE1C LTR MaLR 0 375 1 2358 74 0 10 chr6 60396118 60396429 -128883125 - AluY SINE Alu -3 308 1 1988 125 30 7 chr6 60396639 60396944 -128882610 - AluSx SINE Alu 0 312 1 919 302 42 6 chr6 60396977 60397308 -128882246 + L1MCc LINE L1 17 359 -6064 321 327 60 7 chr6 60397765 60397915 -128881639 + L1M4 LINE L1 3014 3171 -2975 25 31 0 0 chr6 60397915 60397947 -128881607 + AT_rich Low_complexity Low_complexity 1 32 0 302 308 47 6 chr6 60397978 60398150 -128881404 + L1M4 LINE L1 3937 4115 -2031 253 323 8 0 chr6 60398156 60398280 -128881274 + L1M4 LINE L1 4244 4368 -1778 367 265 25 12 chr6 60398340 60398502 -128881052 + L1M4 LINE L1 4460 4623 -1523 374 318 45 34 chr6 60398945 60399124 -128880430 + MIR SINE MIR 82 262 0 6491 133 17 23 chr6 60399958 60401160 -128878394 + L1MA3 LINE L1 4593 5783 -522 1251 267 3 0 chr6 60401160 60401452 -128878102 + AluJb SINE Alu 1 293 -9 6491 133 17 23 chr6 60401452 60401973 -128877581 + L1MA3 LINE L1 5783 6305 0 2752 194 4 4 chr6 60403212 60403754 -128875800 - L1MB1 LINE L1 -3 6165 5624 220 315 0 0 chr6 60404223 60404277 -128875277 - MER5A DNA MER1_type -7 182 129 464 225 18 0 chr6 60404525 60404636 -128874918 + MER104 DNA Tc2 2 114 -66 1649 170 68 12 chr6 60406394 60406717 -128872837 - L1PA16 LINE L1 0 6166 5826 363 78 0 0 chr6 60407771 60407822 -128871732 + (GA)n Simple_repeat Simple_repeat 2 52 0 20304 173 21 13 chr6 60407937 60411849 -128867705 + L1MA3 LINE L1 1 3941 -3624 11335 167 21 28 chr6 60411846 60413820 -128865734 + L1MA3 LINE L1 4245 5515 -2209 * 1282 102 5 42 chr6 60413820 60413880 -128865674 + L1MA1 LINE L1 6090 6151 -151 1807 176 0 10 chr6 60413880 60414186 -128865368 + AluJb SINE Alu 1 303 -9 1282 102 5 42 chr6 60414186 60414335 -128865219 + L1MA1 LINE L1 6151 6296 -6 11335 167 21 28 chr6 60414335 60415190 -128864364 + L1MA3 LINE L1 5515 6374 -1350 1971 137 9 29 chr6 60415190 60415532 -128864022 - MER1B DNA MER1_type 0 337 3 11335 167 21 28 chr6 60415532 60416019 -128863535 + L1MA3 LINE L1 6374 6863 -861 2126 96 3 20 chr6 60416019 60416349 -128863205 + AluSp SINE Alu 1 325 0 11335 167 21 28 chr6 60416349 60416488 -128863066 + L1MA3 LINE L1 6863 7681 -43 291 310 40 77 chr6 60418647 60418833 -128860721 - MIR SINE MIR -65 197 21 613 345 48 36 chr6 60419941 60420446 -128859108 + L1M3b LINE L1 1217 1727 -5769 2734 275 60 40 chr6 60420706 60422273 -128857281 + L1M3b LINE L1 2097 3589 -3976 3917 181 28 12 chr6 60422274 60422590 -128856964 + L1MA6 LINE L1 5478 5787 -513 516 72 0 0 chr6 60422590 60422659 -128856895 + (TA)n Simple_repeat Simple_repeat 2 70 0 3917 181 28 12 chr6 60422659 60423152 -128856402 + L1MA6 LINE L1 5787 6300 0 585 255 117 0 chr6 60423200 60423396 -128856158 + MIR SINE MIR 36 254 -8 314 159 14 0 chr6 60423397 60423466 -128856088 + (CACCAT)n Simple_repeat Simple_repeat 1 70 0 253 317 98 61 chr6 60423970 60424216 -128855338 + L2 LINE L2 2125 2379 -935 318 302 241 9 chr6 60424278 60424490 -128855064 + MIR SINE MIR 2 262 0 243 0 0 0 chr6 60425771 60425798 -128853756 + (ATG)n Simple_repeat Simple_repeat 2 28 0 9558 29 13 0 chr6 60425830 60426985 -128852569 - L1PA3 LINE L1 -3116 3030 1861 19212 36 0 0 chr6 60426987 60430152 -128849402 + L1PA3 LINE L1 3029 6194 0 594 116 158 0 chr6 60431354 60431449 -128848105 + THE1B LTR MaLR 1 110 -254 7043 40 7 2 chr6 60431482 60432354 -128847200 + L1PA5 LINE L1 5276 6151 -3 326 265 33 60 chr6 60433098 60433249 -128846305 - MIR SINE MIR -2 260 114 405 212 8 42 chr6 60433357 60433475 -128846079 + Charlie4 DNA MER1_type 1826 1939 -22 1934 122 17 17 chr6 60433925 60434220 -128845334 + AluSx SINE Alu 1 295 -17 204 349 24 12 chr6 60434395 60434478 -128845076 + L2 LINE L2 3187 3270 -2 300 133 0 0 chr6 60434555 60434615 -128844939 + (GA)n Simple_repeat Simple_repeat 2 61 0 26 0 0 0 chr6 60434862 60434888 -128844666 + AT_rich Low_complexity Low_complexity 1 26 0 13023 42 0 1 chr6 60434891 60437269 -128842285 - L1PA3 LINE L1 -4 6151 3777 264 231 8 90 chr6 60437453 60437587 -128841967 - L1MC5 LINE L1 -76 7885 7763 912 270 66 88 chr6 60437615 60438488 -128841066 - L1MC5 LINE L1 -794 7014 6279 5853 110 10 12 chr6 60438792 60440196 -128839358 + L1PA13 LINE L1 4766 6162 -1 1510 147 121 0 chr6 60440785 60441050 -128838504 + AluSx SINE Alu 1 297 -15 290 302 65 44 chr6 60492452 60492590 -128786964 - MIR SINE MIR -63 145 21 1441 195 10 26 chr6 60493372 60493680 -128785874 + MER74C LTR ERVL 158 460 0 2300 268 65 38 chr6 60493685 60494695 -128784859 - L1MDa LINE L1 -5403 1137 34 21 36 0 0 chr6 60494715 60494743 -128784811 + AT_rich Low_complexity Low_complexity 1 28 0 * 1206 273 86 35 chr6 60494731 60495237 -128784317 - L1MC4 LINE L1 -1 8041 7497 1812 140 7 18 chr6 60495237 60495551 -128784003 - AluSx SINE Alu 0 311 1 1206 273 86 35 chr6 60495551 60495648 -128783906 - L1MC4 LINE L1 -545 7497 7406 22 0 0 0 chr6 60495977 60495999 -128783555 + AT_rich Low_complexity Low_complexity 1 22 0 444 312 41 50 chr6 60496942 60497163 -128782391 - MLT1L LTR MaLR -200 415 197 189 171 0 0 chr6 60497575 60497610 -128781944 + (CA)n Simple_repeat Simple_repeat 2 36 0 183 301 71 26 chr6 60498317 60498430 -128781124 + L2 LINE L2 2844 2961 -352 400 188 0 0 chr6 60498438 60498507 -128781047 + MIR SINE MIR 52 120 -142 244 331 62 7 chr6 60498518 60498663 -128780891 + MIR SINE MIR 97 249 -13 201 156 0 0 chr6 60499667 60499699 -128779855 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 391 311 93 14 chr6 60499702 60499915 -128779639 - MIR SINE MIR -10 252 20 727 204 199 6 chr6 60500347 60500528 -128779026 + MER20 DNA MER1_type 1 216 -3 280 307 51 15 chr6 60500747 60500884 -128778670 + L1MC/D LINE L1 5693 5834 -1974 632 250 18 0 chr6 60500960 60501124 -128778430 - L1MD3 LINE L1 -11 7984 7818 793 228 53 0 chr6 60501124 60501295 -128778259 - MER58A DNA MER1_type 0 224 45 4209 241 92 43 chr6 60501313 60502997 -128776557 - L1MC4a LINE L1 -158 7650 5885 442 340 118 36 chr6 60503161 60503578 -128775976 + L1MC/D LINE L1 5301 5751 -411 22 0 0 0 chr6 60505856 60505878 -128773676 + AT_rich Low_complexity Low_complexity 1 22 0 1254 232 21 12 chr6 60507364 60507696 -128771858 + L1MC3 LINE L1 7451 7785 0 271 224 15 0 chr6 60509021 60509088 -128770466 + LTR60 LTR ERV1 1 68 -518 1143 262 26 14 chr6 60509192 60509543 -128770011 + LTR43 LTR ERV1 117 471 -131 253 364 42 17 chr6 60509832 60509950 -128769604 + MER5A DNA MER1_type 43 163 -26 181 114 0 45 chr6 60510074 60510118 -128769436 + (GAAAA)n Simple_repeat Simple_repeat 5 46 0 432 348 52 39 chr6 60510145 60510703 -128768851 + L1MEc LINE L1 100 664 -5732 707 232 92 97 chr6 60511277 60511675 -128767879 - MER66A LTR ERV1 -86 392 97 251 264 19 57 chr6 60511745 60511851 -128767703 - MIR SINE MIR -37 225 124 21 36 0 0 chr6 60512971 60512999 -128766555 + AT_rich Low_complexity Low_complexity 1 28 0 818 261 96 56 chr6 60513729 60514124 -128765430 + MLT1C LTR MaLR 57 467 0 21 36 0 0 chr6 60514239 60514267 -128765287 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr6 60514998 60515028 -128764526 + AT_rich Low_complexity Low_complexity 1 30 0 2293 151 22 35 chr6 60515039 60515502 -128764052 - L1MA4 LINE L1 -16 6284 5828 237 395 34 17 chr6 60516124 60516243 -128763311 + L2 LINE L2 3145 3265 -7 454 173 0 0 chr6 60516285 60516360 -128763194 - AluSg/x SINE Alu -18 292 218 235 173 0 80 chr6 60516519 60516594 -128762960 + A-rich Low_complexity Low_complexity 2 70 0 22 0 0 0 chr6 60516653 60516675 -128762879 + AT_rich Low_complexity Low_complexity 1 22 0 1589 149 0 0 chr6 60516680 60516929 -128762625 + AluSq SINE Alu 6 254 -59 27 62 0 0 chr6 60517244 60517292 -128762262 + AT_rich Low_complexity Low_complexity 1 48 0 580 366 78 0 chr6 60518006 60518378 -128761176 + MLT1J LTR MaLR 6 406 -105 251 106 35 94 chr6 60518477 60518562 -128760992 + A-rich Low_complexity Low_complexity 3 82 0 78 63 0 6 chr6 60518612 60518681 -128760873 + AT_rich Low_complexity Low_complexity 1 69 -89 257 45 0 45 chr6 60518681 60518725 -128760829 + (TAAAA)n Simple_repeat Simple_repeat 4 45 0 78 63 0 6 chr6 60518725 60518814 -128760740 + AT_rich Low_complexity Low_complexity 69 158 0 446 229 0 0 chr6 60520313 60520396 -128759158 + MLT1E1 LTR MaLR 3 85 -569 20186 114 54 0 chr6 60522084 60525888 -128753666 + L1PA7 LINE L1 2251 6091 -63 426 39 0 0 chr6 60525888 60525940 -128753614 + (CA)n Simple_repeat Simple_repeat 1 52 0 20186 114 54 0 chr6 60525940 60526008 -128753546 + L1PA7 LINE L1 6091 6154 0 13541 206 41 19 chr6 60526126 60527903 -128751651 + L1PA13 LINE L1 2 1737 -5060 1732 160 42 0 chr6 60527903 60528024 -128751530 + AluSx SINE Alu 1 115 -197 315 0 0 0 chr6 60528024 60528059 -128751495 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1732 160 42 0 chr6 60528059 60528225 -128751329 + AluSx SINE Alu 115 300 -12 13541 206 41 19 chr6 60528225 60528337 -128751217 + L1PA13 LINE L1 1737 1845 -4952 2110 103 0 0 chr6 60528337 60528641 -128750913 + AluY SINE Alu 1 304 0 13541 206 41 19 chr6 60528641 60531957 -128747597 + L1PA13 LINE L1 1845 5340 -1457 5659 133 16 13 chr6 60531961 60532990 -128746564 + L1PA13 LINE L1 5793 6807 -7 33 43 0 0 chr6 60533186 60533233 -128746321 + AT_rich Low_complexity Low_complexity 1 47 0 298 317 73 47 chr6 60533392 60533733 -128745821 + L1M4 LINE L1 2370 2719 -3427 849 334 28 70 chr6 60533740 60534384 -128745170 + L1PA13 LINE L1 788 1404 -6170 9021 259 94 20 chr6 60534807 60538572 -128740982 + L1PA13 LINE L1 2182 6301 -1283 1925 130 3 7 chr6 60538572 60538881 -128740673 + AluSx SINE Alu 1 308 0 9021 259 94 20 chr6 60538881 60539190 -128740364 + L1PA13 LINE L1 6301 6586 -998 2400 64 3 6 chr6 60539344 60539656 -128739898 - AluY SINE Alu 0 311 1 207 246 23 46 chr6 60539685 60539860 -128739694 + (TAAA)n Simple_repeat Simple_repeat 4 174 0 707 231 9 86 chr6 60540331 60540552 -128739002 + MER58C DNA MER1_type 11 214 -1 331 283 0 40 chr6 60540880 60540979 -128738575 - L1MC4 LINE L1 -1334 6708 6614 318 238 25 12 chr6 60540968 60541048 -128738506 - L1MCa LINE L1 -4358 2068 1988 * 1094 37 0 0 chr6 60542325 60542460 -128737094 + L1PA5 LINE L1 6020 6154 0 2008 102 0 4 chr6 60543234 60543509 -128736045 + AluY SINE Alu 2 275 -36 258 32 0 0 chr6 60543509 60543540 -128736014 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 463 324 46 46 chr6 60543585 60543823 -128735731 + MIR SINE MIR 21 258 -4 2151 70 0 28 chr6 60543823 60544280 -128735274 - AluY SINE Alu 0 451 3 23 0 0 0 chr6 60544284 60544307 -128735247 + AT_rich Low_complexity Low_complexity 1 23 0 301 260 14 14 chr6 60544354 60544427 -128735127 - MER2 DNA MER2_type 0 345 273 1882 151 0 0 chr6 60544476 60544755 -128734799 + AluSx SINE Alu 1 279 -33 1058 126 0 11 chr6 60544756 60544938 -128734616 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 771 149 17 35 chr6 60544940 60545536 -128734018 + GA-rich Low_complexity Low_complexity 1 585 0 810 155 75 37 chr6 60545537 60545724 -128733830 - MER2 DNA MER2_type -150 195 2 232 278 0 14 chr6 60545725 60545797 -128733757 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 373 365 89 5 chr6 60545988 60546202 -128733352 - MIR SINE MIR -11 251 20 21 57 0 0 chr6 60547094 60547129 -128732425 + AT_rich Low_complexity Low_complexity 1 35 0 1397 208 46 19 chr6 60547529 60547895 -128731659 + L1MC2 LINE L1 5969 6344 0 240 373 47 20 chr6 60547973 60548123 -128731431 - MIR SINE MIR -97 165 12 220 185 19 19 chr6 60548388 60548442 -128731112 + (TA)n Simple_repeat Simple_repeat 2 55 0 1247 234 39 102 chr6 60548741 60549309 -128730245 - L1MC4 LINE L1 0 8042 7511 424 333 0 0 chr6 60549911 60550028 -128729526 - MIR3 SINE MIR 0 208 92 1086 148 0 11 chr6 60550265 60550454 -128729100 + L1MA6 LINE L1 6108 6294 -6 1613 149 4 8 chr6 60551256 60551511 -128728043 + AluJb SINE Alu 1 254 -58 4481 37 4 0 chr6 60551648 60552189 -128727365 + L1PA4 LINE L1 5609 6151 -4 219 195 0 0 chr6 60552434 60552475 -128727079 - MIR SINE MIR -83 125 85 316 355 65 16 chr6 60552491 60552736 -128726818 + L2 LINE L2 2231 2487 -827 206 213 0 0 chr6 60553285 60553332 -128726222 - MIR SINE MIR -114 148 102 706 239 15 15 chr6 60556750 60556947 -128722607 - Charlie1b DNA MER1_type -241 282 86 1916 256 91 27 chr6 60557022 60557986 -128721568 - L1M4 LINE L1 -1566 4762 3737 699 294 60 25 chr6 60558220 60558478 -128721076 - L1MEc LINE L1 -4283 2113 1865 2171 110 16 0 chr6 60558478 60558786 -128720768 - AluSp SINE Alu 0 313 1 699 294 60 25 chr6 60558786 60558804 -128720750 - L1MEc LINE L1 -4531 1865 1849 450 0 0 0 chr6 60558804 60558854 -128720700 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 699 294 60 25 chr6 60558854 60559011 -128720543 - L1MEc LINE L1 -4547 1849 1664 8953 182 34 11 chr6 60559028 60559790 -128719764 - L1MA4 LINE L1 -9 6291 5548 293 100 20 0 chr6 60559790 60559840 -128719714 + (TTG)n Simple_repeat Simple_repeat 1 51 0 8953 182 34 11 chr6 60559840 60561846 -128717708 - L1MA4 LINE L1 -752 5548 3459 2787 39 17 0 chr6 60561854 60562215 -128717339 - L1P LINE L1 -743 5403 5037 5960 22 1 0 chr6 60562215 60562904 -128716650 + L1PA3 LINE L1 5462 6152 -3 4402 258 60 14 chr6 60562915 60565929 -128713625 - L1M4 LINE L1 -2643 3685 536 630 192 140 22 chr6 60616758 60616987 -128662567 + MER5C DNA MER1_type 1 256 -68 324 140 35 0 chr6 60616988 60617045 -128662509 + L1MA6 LINE L1 6233 6291 -9 258 161 0 0 chr6 60617057 60617119 -128662435 + L1MA7 LINE L1 6230 6291 0 194 266 114 13 chr6 60617121 60617200 -128662354 + MER5C DNA MER1_type 238 324 0 237 211 0 0 chr6 60618100 60618152 -128661402 + A-rich Low_complexity Low_complexity 1 52 0 343 66 0 33 chr6 60619028 60619089 -128660465 + (TG)n Simple_repeat Simple_repeat 2 60 0 986 227 23 101 chr6 60619609 60620005 -128659549 + MLT1A1 LTR MaLR 1 365 0 1711 313 60 51 chr6 60620008 60621203 -128658351 + L2 LINE L2 2092 3298 -15 22 35 0 0 chr6 60621735 60621764 -128657790 + AT_rich Low_complexity Low_complexity 1 29 0 2218 115 0 0 chr6 60622787 60623083 -128656471 - AluSq SINE Alu -17 296 1 2089 177 63 7 chr6 60623225 60623672 -128655882 + L1MB8 LINE L1 5701 6172 -6 903 119 86 0 chr6 60624886 60625037 -128654517 - MER54B LTR ERVL 0 793 630 389 214 31 20 chr6 60625026 60625124 -128654430 + MER54B LTR ERVL 543 641 -152 * 4281 145 70 6 chr6 60625220 60625944 -128653610 - MER4E LTR ERV1 -5 774 4 1426 174 6 77 chr6 60625954 60626265 -128653289 - MER54B LTR ERVL -504 289 1 257 310 20 30 chr6 60626690 60626790 -128652764 - L2 LINE L2 -3 3269 3171 2182 110 3 0 chr6 60627781 60628072 -128651482 + AluSc SINE Alu 1 292 -17 355 148 83 18 chr6 60629511 60629680 -128649874 + (TA)n Simple_repeat Simple_repeat 1 180 0 35 24 0 0 chr6 60629693 60629735 -128649819 + AT_rich Low_complexity Low_complexity 1 42 0 620 120 29 17 chr6 60629835 60630010 -128649544 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 287 68 96 0 chr6 60630010 60630083 -128649471 + (TA)n Simple_repeat Simple_repeat 1 80 0 639 99 0 68 chr6 60630083 60630275 -128649279 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 186 134 41 31 chr6 60630292 60630389 -128649165 + (TATAA)n Simple_repeat Simple_repeat 2 99 0 23 33 0 0 chr6 60630389 60630419 -128649135 + AT_rich Low_complexity Low_complexity 1 30 0 183 202 30 0 chr6 60630425 60630524 -128649030 + (TA)n Simple_repeat Simple_repeat 2 103 0 54 49 0 0 chr6 60630526 60630608 -128648946 + AT_rich Low_complexity Low_complexity 1 82 0 227 253 44 33 chr6 60630890 60630981 -128648573 - L1M4 LINE L1 -2253 3893 3802 410 200 39 0 chr6 60630991 60631121 -128648433 - L1M4 LINE L1 -2947 3199 3065 867 135 77 168 chr6 60631124 60631398 -128648156 + LTR23 LTR ERV1 1 249 -188 211 40 0 133 chr6 60631411 60631486 -128648068 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 32 26 0 0 chr6 60631491 60631530 -128648024 + AT_rich Low_complexity Low_complexity 1 39 0 816 194 24 15 chr6 60631530 60631736 -128647818 + LTR23 LTR ERV1 230 437 0 1946 142 4 4 chr6 60631814 60632095 -128647459 + AluSx SINE Alu 3 283 -29 811 208 72 83 chr6 60632112 60632237 -128647317 + LTR23-int LTR ERV1 66 191 -4932 1395 211 29 29 chr6 60632237 60632549 -128647005 + AluJo SINE Alu 1 312 0 811 208 72 83 chr6 60632549 60632788 -128646766 + LTR23-int LTR ERV1 191 567 -4556 3821 173 42 10 chr6 60632789 60633478 -128646076 - MER50 LTR ERV1 -23 711 1 271 186 157 0 chr6 60634298 60634368 -128645186 + LTR23-int LTR ERV1 1133 1213 -5118 391 212 9 26 chr6 60634397 60634510 -128645044 + LTR23-int LTR ERV1 1289 1399 -4932 351 123 14 82 chr6 60634619 60634649 -128644905 + LTR23-int LTR ERV1 1380 1410 -4921 1046 164 95 125 chr6 60634649 60635113 -128644441 + LTR7 LTR ERV1 1 450 0 351 123 14 82 chr6 60635113 60635155 -128644399 + LTR23-int LTR ERV1 1410 1447 -4884 1841 198 90 42 chr6 60635171 60635388 -128644166 - LTR49 LTR ERV1 -23 572 367 3217 133 39 8 chr6 60635388 60635923 -128643631 - MER41C LTR ERV1 0 554 3 1841 198 90 42 chr6 60635923 60636251 -128643303 - LTR49 LTR ERV1 -228 367 1 495 144 0 41 chr6 60636251 60636348 -128643206 + LTR23-int LTR ERV1 1445 1537 -4794 182 37 37 0 chr6 60636476 60636503 -128643051 + (TAA)n Simple_repeat Simple_repeat 1 28 0 385 221 0 0 chr6 60636509 60636586 -128642968 + LTR49-int LTR ERV1 914 990 -4133 384 265 34 22 chr6 60636588 60636793 -128642761 + MER34C LTR ERV1 160 408 -177 701 231 81 0 chr6 60636794 60636967 -128642587 + LTR49-int LTR ERV1 1209 1395 -3728 624 216 14 0 chr6 60637021 60637169 -128642385 - LTR23-int LTR ERV1 -2617 2506 2357 1565 139 4 4 chr6 60637170 60637422 -128642132 - L1PA12 LINE L1 -2305 5279 5028 6649 263 30 15 chr6 60637423 60639349 -128640205 - L1PA12 LINE L1 -2904 4680 2693 191 36 36 0 chr6 60639349 60639377 -128640177 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 6649 263 30 15 chr6 60639377 60640668 -128638886 - L1PA12 LINE L1 -4891 2693 1422 461 168 53 11 chr6 60640681 60640776 -128638778 + LTR9 LTR ERV1 1 99 -513 5976 55 25 3 chr6 60640779 60641541 -128638013 - L1PA5 LINE L1 0 6154 5376 1770 206 35 69 chr6 60641541 60642065 -128637489 + LTR9 LTR ERV1 98 596 -16 2209 329 19 62 chr6 60642120 60643313 -128636241 - L1PA12 LINE L1 -5632 1949 1 367 226 8 51 chr6 60643318 60643487 -128636067 + LTR49-int LTR ERV1 2928 4221 -2035 2019 142 4 47 chr6 60643489 60644062 -128635492 - MER51A LTR ERV1 0 634 5 2990 178 26 5 chr6 60644068 60644686 -128634868 + LTR49-int LTR ERV1 4222 4852 -1479 5232 202 8 5 chr6 60644687 60645984 -128633570 - L1P5 LINE L1 -1727 4419 3085 3918 185 32 3 chr6 60645984 60647187 -128632367 + L1P5 LINE L1 4413 5647 -504 219 36 0 0 chr6 60648067 60648095 -128631459 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1708 143 57 14 chr6 60648097 60648377 -128631177 - AluSx SINE Alu -20 292 1 284 281 168 54 chr6 60648833 60649036 -128630518 + Charlie2 DNA MER1_type 83 308 -2554 244 216 122 0 chr6 60649372 60649446 -128630108 + MLT1I LTR MaLR 307 389 -20 4938 134 46 11 chr6 60649684 60651099 -128628455 + L1PA16 LINE L1 4706 6157 -9 256 306 49 28 chr6 60651227 60651371 -128628183 - MERVL LTR ERVL -2940 2545 2399 29 20 0 39 chr6 60651593 60651625 -128627929 + AT_rich Low_complexity Low_complexity 1 32 -17 868 132 60 6 chr6 60651625 60651792 -128627762 - L1MA8 LINE L1 -2 6289 6114 29 20 0 39 chr6 60651792 60651810 -128627744 + AT_rich Low_complexity Low_complexity 32 49 0 6198 43 5 2 chr6 60652170 60653032 -128626522 - L1PA5 LINE L1 -139 6015 5153 537 116 0 12 chr6 60653023 60653109 -128626445 - L1MA8 LINE L1 -194 6097 6013 * 22 0 0 0 chr6 60653981 60654003 -128625551 + AT_rich Low_complexity Low_complexity 1 22 0 1570 109 8 35 chr6 60654151 60654407 -128625147 - AluSx SINE Alu -15 297 49 207 318 141 0 chr6 60654434 60654519 -128625035 + MIR SINE MIR 150 246 -16 21 0 0 0 chr6 60655097 60655118 -128624436 + AT_rich Low_complexity Low_complexity 1 21 0 629 115 10 10 chr6 60656894 60656990 -128622564 - L1M1 LINE L1 -519 5786 5691 391 212 0 20 chr6 60657250 60657358 -128622196 + AluJ/FLAM SINE Alu 14 87 -215 251 315 37 37 chr6 60657492 60657600 -128621954 - MIR SINE MIR -58 150 43 265 335 89 6 chr6 60657829 60657987 -128621567 + MIR SINE MIR 61 231 -31 282 56 0 0 chr6 60659255 60659291 -128620263 + (CA)n Simple_repeat Simple_repeat 2 37 0 381 106 47 12 chr6 60660620 60660705 -128618849 + GA-rich Low_complexity Low_complexity 1 88 0 34 0 0 0 chr6 60660902 60660936 -128618618 + AT_rich Low_complexity Low_complexity 1 34 0 292 60 60 0 chr6 60660997 60661047 -128618507 + CT-rich Low_complexity Low_complexity 1 53 0 186 300 0 0 chr6 60661142 60661182 -128618372 + L2 LINE L2 3217 3256 -16 33 0 0 0 chr6 60662961 60662994 -128616560 + AT_rich Low_complexity Low_complexity 1 33 0 2074 113 0 14 chr6 60662994 60663286 -128616268 - AluSx SINE Alu -24 288 1 315 371 25 20 chr6 60663327 60663529 -128616025 + MIR SINE MIR 47 249 -13 260 306 14 0 chr6 60663541 60663613 -128615941 - L2 LINE L2 0 3313 3241 434 312 61 67 chr6 60663623 60664014 -128615540 - MLT1I LTR MaLR -20 389 1 206 300 67 42 chr6 60664016 60664136 -128615418 - L2 LINE L2 -74 3239 3117 472 238 45 68 chr6 60664757 60665093 -128614461 + L1MEd LINE L1 904 1231 -4888 478 305 111 30 chr6 60665330 60665628 -128613926 - L1MEd LINE L1 -5794 325 4 24 0 0 0 chr6 60665803 60665827 -128613727 + AT_rich Low_complexity Low_complexity 1 24 0 1934 177 68 0 chr6 60666042 60666437 -128613117 - MER95 LTR ERV -1 430 9 746 259 32 0 chr6 60666780 60666965 -128612589 + MIR SINE MIR 67 257 -5 24 0 0 0 chr6 60667066 60667090 -128612464 + AT_rich Low_complexity Low_complexity 1 24 0 12400 183 26 9 chr6 60668123 60670719 -128608835 + L1M1 LINE L1 8 3735 -3830 589 219 0 0 chr6 60670881 60671009 -128608545 + LTR49-int LTR ERV1 4849 4976 -1355 1326 223 0 42 chr6 60671019 60671302 -128608252 - AluJo SINE Alu -36 276 6 1528 203 3 17 chr6 60671316 60671612 -128607942 - AluJo SINE Alu -20 292 1 494 103 39 0 chr6 60671613 60671691 -128607863 + LTR23-int LTR ERV1 4969 5049 -1282 2251 138 14 9 chr6 60671698 60672047 -128607507 - THE1B LTR MaLR -11 353 3 10050 124 11 28 chr6 60672049 60673657 -128605897 - THE1B-int LTR MaLR 0 1580 1 2396 135 6 6 chr6 60673657 60674021 -128605533 - THE1B LTR MaLR 0 364 1 673 159 9 0 chr6 60674021 60674134 -128605420 + LTR23-int LTR ERV1 5045 5158 -1173 778 211 13 13 chr6 60674137 60674293 -128605261 + FRAM SINE Alu 1 153 -23 736 132 25 0 chr6 60674421 60674542 -128605012 + LTR23-int LTR ERV1 5313 5436 -895 541 221 15 15 chr6 60674542 60674678 -128604876 + AluJb SINE Alu 1 136 -176 2385 215 22 58 chr6 60674682 60675444 -128604110 + LTR23-int LTR ERV1 4427 5123 0 1040 168 23 0 chr6 60675460 60675633 -128603921 + AluSg/x SINE Alu 132 308 -4 1222 171 35 9 chr6 60675642 60675870 -128603684 + LTR23 LTR ERV1 5 238 -199 803 128 0 0 chr6 60675871 60675988 -128603566 + AluSg/x SINE Alu 188 304 -8 818 183 20 10 chr6 60675994 60676198 -128603356 + LTR23 LTR ERV1 230 467 0 1686 279 69 38 chr6 60676444 60677107 -128602447 + MER21B LTR ERV1 55 738 -125 233 247 0 13 chr6 60678279 60678356 -128601198 + A-rich Low_complexity Low_complexity 5 80 0 742 273 109 77 chr6 60678411 60678978 -128600576 - MLT1H1 LTR MaLR 0 555 1 414 0 0 0 chr6 60680730 60680776 -128598778 + (TG)n Simple_repeat Simple_repeat 2 47 0 1726 194 0 0 chr6 60681666 60681955 -128597599 - AluJb SINE Alu -19 293 5 2130 105 0 0 chr6 60683540 60683834 -128595720 + AluY SINE Alu 2 295 -16 2968 187 36 8 chr6 60683925 60684041 -128595513 + LTR29 LTR ERV1 3 114 -508 204 111 0 0 chr6 60684041 60684077 -128595477 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2968 187 36 8 chr6 60684077 60684563 -128594991 + LTR29 LTR ERV1 114 622 0 1673 210 92 107 chr6 60684673 60685411 -128594143 - LTR8A LTR ERV1 0 727 1 3326 181 20 0 chr6 60685735 60685820 -128593734 + L1MC2 LINE L1 5454 5535 -809 3326 185 22 32 chr6 60685820 60686545 -128593009 + L1MC2 LINE L1 5626 6344 0 3326 181 20 0 chr6 60686545 60686558 -128592996 + L1MC2 LINE L1 5535 6344 0 206 203 27 40 chr6 60686792 60686866 -128592688 + (TA)n Simple_repeat Simple_repeat 2 74 0 238 254 15 0 chr6 60687472 60687539 -128592015 + L1ME LINE L1 4885 4952 -1194 366 297 49 5 chr6 60687825 60688010 -128591544 + L1ME LINE L1 5319 5511 -651 21 0 0 0 chr6 60688083 60688104 -128591450 + AT_rich Low_complexity Low_complexity 1 21 0 1995 128 10 22 chr6 60688104 60688417 -128591137 + AluSc SINE Alu 1 309 0 1238 126 0 0 chr6 60688622 60688804 -128590750 + AluY SINE Alu 126 307 -4 1467 166 25 40 chr6 60688856 60689181 -128590373 + L1MA9 LINE L1 5993 6312 0 394 252 80 0 chr6 60689350 60689480 -128590074 + MLT1G3 LTR MaLR 1 139 -416 235 354 44 9 chr6 60690183 60690296 -128589258 - L2 LINE L2 -540 2774 2658 3658 189 37 37 chr6 60691067 60691928 -128587626 - L1MB1 LINE L1 -2 6166 5306 1891 236 26 36 chr6 60692075 60692656 -128586898 - L1MA9 LINE L1 -904 5242 4668 * 4080 193 34 48 chr6 60692655 60693647 -128585907 + L1MA9 LINE L1 5254 6231 -81 267 189 0 0 chr6 60693647 60693700 -128585854 + (CATA)n Simple_repeat Simple_repeat 3 55 0 681 233 0 0 chr6 60693766 60693895 -128585659 - FLAM_C SINE Alu -4 129 1 500 271 38 21 chr6 60693904 60694144 -128585410 - L1MB1 LINE L1 -2230 3916 3673 4486 69 9 0 chr6 60694334 60694916 -128584638 + LTR14C LTR ERVK 1 587 0 12793 96 2 6 chr6 60694916 60696699 -128582855 + HERVK14C LTR ERVK 1 1777 -5640 4850 83 0 2 chr6 60696699 60697338 -128582216 + HERVK14C LTR ERVK 1907 2544 -4873 * 14137 68 2 13 chr6 60697331 60698472 -128581082 + HERVK14C LTR ERVK 5289 6406 -1011 2220 93 0 0 chr6 60698472 60698791 -128580763 + AluY SINE Alu 1 319 0 14137 68 2 13 chr6 60698791 60699488 -128580066 + HERVK14C LTR ERVK 6406 7109 -308 4505 210 27 16 chr6 60699588 60700666 -128578888 + L1MA2 LINE L1 2338 3427 -2719 1689 199 83 119 chr6 60700883 60701645 -128577909 - LTR1B LTR ERV1 -85 741 8 9095 157 13 55 chr6 60701652 60704673 -128574881 + L1MA2 LINE L1 3421 6304 0 402 304 34 7 chr6 60704696 60704844 -128574710 + L1ME1 LINE L1 5467 5618 -548 2579 229 37 80 chr6 60704848 60705229 -128574325 + L1MCb LINE L1 1 397 -5648 180 0 0 0 chr6 60705229 60705249 -128574305 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2579 229 37 80 chr6 60705249 60705835 -128573719 + L1MCb LINE L1 397 927 -5118 535 435 112 10 chr6 60705841 60706243 -128573311 + L1ME1 LINE L1 5719 6161 -5 799 199 3 170 chr6 60707604 60707886 -128571668 + MER8 DNA MER2_type 1 235 -4 305 379 44 56 chr6 60708280 60708531 -128571023 - MIR SINE MIR -14 248 1 209 354 30 48 chr6 60709729 60709944 -128569610 + MIR SINE MIR 13 218 -44 2001 120 40 7 chr6 60711114 60711415 -128568139 - AluSx SINE Alu -1 311 1 24 0 0 0 chr6 60712430 60712454 -128567100 + AT_rich Low_complexity Low_complexity 1 24 0 2035 81 0 4 chr6 60712755 60713013 -128566541 - AluSg SINE Alu -51 259 3 26 0 0 0 chr6 60713272 60713298 -128566256 + AT_rich Low_complexity Low_complexity 1 26 0 2222 181 25 104 chr6 60713298 60713392 -128566162 + MLT2B2 LTR ERVL 1 101 -414 1099 221 66 68 chr6 60713392 60713758 -128565796 - MLT1A1 LTR MaLR 0 365 1 2222 181 25 104 chr6 60713758 60714222 -128565332 + MLT2B2 LTR ERVL 101 515 0 21 57 0 0 chr6 60714313 60714348 -128565206 + AT_rich Low_complexity Low_complexity 1 35 0 1360 233 72 53 chr6 60715493 60715663 -128563891 - L1MC4a LINE L1 -1978 5830 5665 7785 70 4 4 chr6 60715663 60716669 -128562885 - LTR13 LTR ERVK 0 1007 2 1360 233 72 53 chr6 60716669 60716971 -128562583 - L1MC4a LINE L1 -2143 5665 5349 276 264 77 71 chr6 60717681 60718007 -128561547 - L1MC4a LINE L1 -1643 4503 4176 1413 271 87 14 chr6 60718324 60718438 -128561116 + L1ME2 LINE L1 4447 4551 -1595 411 21 0 0 chr6 60718438 60718486 -128561068 + (TA)n Simple_repeat Simple_repeat 2 49 0 1413 271 87 14 chr6 60718486 60718944 -128560610 + L1ME2 LINE L1 4551 5061 -1085 731 243 72 59 chr6 60718953 60719257 -128560297 + L1ME2 LINE L1 5759 6066 -98 21 0 0 0 chr6 60719289 60719310 -128560244 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 60719804 60719833 -128559721 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 60719935 60719964 -128559590 + AT_rich Low_complexity Low_complexity 1 29 0 237 278 46 83 chr6 60720975 60721083 -128558471 - L2 LINE L2 0 3272 3169 307 372 78 50 chr6 60723526 60723784 -128555770 - HAL1 LINE L1 -2080 427 163 368 264 107 0 chr6 60724022 60724143 -128555411 + LTR33 LTR ERVL 368 501 -20 186 43 0 0 chr6 60724282 60724305 -128555249 + (TAA)n Simple_repeat Simple_repeat 2 24 0 188 346 58 19 chr6 60724316 60724420 -128555134 - L3 LINE CR1 -1 1576 1469 25 0 0 0 chr6 60724928 60724953 -128554601 + AT_rich Low_complexity Low_complexity 1 25 0 851 492 14 0 chr6 60726961 60727258 -128552296 - AluSq SINE Alu -2 301 1 31 58 0 0 chr6 60727645 60727697 -128551857 + AT_rich Low_complexity Low_complexity 1 52 0 25 31 0 0 chr6 60727724 60727756 -128551798 + AT_rich Low_complexity Low_complexity 1 32 0 999 157 76 0 chr6 60727906 60728129 -128551425 - L1MA8 LINE L1 -2 6289 6050 1187 254 50 16 chr6 60728216 60728731 -128550823 + MER114 LTR ERV 45 577 -71 29 70 0 0 chr6 60729430 60729487 -128550067 + AT_rich Low_complexity Low_complexity 1 57 0 1955 117 7 42 chr6 60729585 60729893 -128549661 - AluSx SINE Alu -12 300 4 31 0 0 0 chr6 60730024 60730055 -128549499 + AT_rich Low_complexity Low_complexity 1 31 0 7438 139 36 20 chr6 60730084 60730261 -128549293 - HSMAR2 DNA Mariner -1 1301 1128 300 27 0 0 chr6 60730261 60730298 -128549256 + (TTGG)n Simple_repeat Simple_repeat 2 38 0 7438 139 36 20 chr6 60730298 60731396 -128548158 - HSMAR2 DNA Mariner -174 1128 6 3898 181 34 62 chr6 60731400 60731531 -128548023 - L1MA9 LINE L1 -82 6230 6097 411 62 185 0 chr6 60731531 60731596 -128547958 - MADE1 DNA Mariner -3 77 1 3898 181 34 62 chr6 60731596 60732609 -128546945 - L1MA9 LINE L1 -215 6097 5118 22 0 0 0 chr6 60733370 60733392 -128546162 + AT_rich Low_complexity Low_complexity 1 22 0 790 194 0 0 chr6 60733393 60733527 -128546027 - AluJb SINE Alu -178 134 1 24 32 0 0 chr6 60733531 60733562 -128545992 + AT_rich Low_complexity Low_complexity 1 31 0 245 217 17 0 chr6 60735082 60735142 -128544412 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 251 28 28 0 chr6 60735843 60735879 -128543675 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 2212 68 4 4 chr6 60735879 60736158 -128543396 - AluY SINE Alu -32 279 1 228 35 0 0 chr6 60737310 60737339 -128542215 + (CCA)n Simple_repeat Simple_repeat 3 31 0 2423 61 3 0 chr6 60737370 60737667 -128541887 + AluY SINE Alu 1 298 -13 28 0 0 0 chr6 60738033 60738061 -128541493 + AT_rich Low_complexity Low_complexity 1 28 0 1366 227 7 26 chr6 60738064 60738368 -128541186 + AluJo SINE Alu 1 298 -14 507 285 43 52 chr6 60739024 60739350 -128540204 + L1MC4 LINE L1 7435 7757 -285 1609 126 3 56 chr6 60739350 60739635 -128539919 + LTR12 LTR ERV1 3 272 -442 300 218 39 0 chr6 60739640 60739718 -128539836 + LTR30 LTR ERV1 544 624 -98 505 178 140 9 chr6 60739719 60739826 -128539728 + LTR12 LTR ERV1 360 480 -234 233 240 39 19 chr6 60740004 60740108 -128539446 + (TCTA)n Simple_repeat Simple_repeat 4 109 0 336 277 62 0 chr6 60740125 60740237 -128539317 + L1MC4 LINE L1 7907 8025 -17 2074 120 10 0 chr6 60740775 60741076 -128538478 + AluY SINE Alu 3 306 -5 1813 116 17 34 chr6 60741359 60741651 -128537903 + AluSp SINE Alu 3 289 -24 2461 90 0 0 chr6 60741751 60742073 -128537481 + LTR14C LTR ERVK 266 587 0 617 186 0 62 chr6 60742073 60742193 -128537361 + Charlie1a DNA MER1_type 48 159 -1296 3662 216 22 47 chr6 60742198 60742472 -128537082 + Charlie1a DNA MER1_type 291 570 -2191 1984 121 0 7 chr6 60742472 60742786 -128536768 - AluY SINE Alu 0 312 1 3662 216 22 47 chr6 60742786 60743606 -128535948 + Charlie1a DNA MER1_type 570 1358 -97 1087 250 63 73 chr6 60744139 60744621 -128534933 + MLT2B1 LTR ERVL 2 480 -40 425 99 12 0 chr6 60744621 60744702 -128534852 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 1087 250 63 73 chr6 60744702 60744739 -128534815 + MLT2B1 LTR ERVL 480 516 -4 509 326 61 72 chr6 60744961 60745390 -128534164 + L2 LINE L2 2889 3312 -1 378 314 127 31 chr6 60747479 60747708 -128531846 - MIR SINE MIR -11 251 1 304 322 61 9 chr6 60747887 60748002 -128531552 - L2 LINE L2 -1064 2250 2130 525 294 81 15 chr6 60748543 60748740 -128530814 - MIR SINE MIR -5 257 48 609 200 43 14 chr6 60749022 60749162 -128530392 + Tigger1 DNA MER2_type 14 157 -2261 * 1143 160 34 5 chr6 60749154 60749360 -128530194 + Tigger1 DNA MER2_type 2205 2416 -2 247 384 90 0 chr6 60749662 60749795 -128529759 + L2 LINE L2 2949 3093 -179 2019 92 14 0 chr6 60750091 60750375 -128529179 + L1PA13 LINE L1 5870 6157 -6 531 218 109 57 chr6 60750402 60750631 -128528923 - Charlie5 DNA MER1_type -41 2571 2331 1938 120 145 6 chr6 60750634 60750951 -128528603 - MSTA LTR MaLR -67 361 1 850 234 35 5 chr6 60751215 60751412 -128528142 - MER3 DNA MER1_type -6 203 1 1948 129 35 27 chr6 60752444 60752816 -128526738 - THE1C LTR MaLR 0 375 1 396 0 0 0 chr6 60752941 60752985 -128526569 + (TA)n Simple_repeat Simple_repeat 1 44 0 36 62 0 0 chr6 60753532 60753596 -128525958 + AT_rich Low_complexity Low_complexity 1 64 0 317 349 89 20 chr6 60753709 60753855 -128525699 + MER5B DNA MER1_type 7 162 -16 1564 218 57 0 chr6 60753955 60754290 -128525264 - MLT1A1 LTR MaLR -11 354 1 2056 176 36 49 chr6 60756699 60757205 -128522349 - L1 LINE L1 -1617 4529 4031 489 255 94 42 chr6 60758547 60758739 -128520815 - MER63A DNA MER1_type -5 205 4 337 302 90 56 chr6 60759688 60760009 -128519545 + L2 LINE L2 2150 2481 -833 26 30 0 0 chr6 60761312 60761345 -128518209 + AT_rich Low_complexity Low_complexity 1 33 0 682 333 9 4 chr6 60761459 60761687 -128517867 - MIR SINE MIR -32 230 2 309 51 0 0 chr6 60762375 60762414 -128517140 + (CA)n Simple_repeat Simple_repeat 2 40 0 1707 252 64 30 chr6 60762752 60763220 -128516334 + MLT2B1 LTR ERVL 2 485 -35 232 119 214 0 chr6 60763265 60763307 -128516247 + MLT2C2 LTR ERVL 414 464 0 7962 14 0 0 chr6 60763331 60764729 -128514825 - L1HS LINE L1 0 6155 4758 187 246 73 73 chr6 60765516 60765626 -128513928 - MIR SINE MIR -55 207 98 294 87 0 0 chr6 60766034 60766080 -128513474 + (TG)n Simple_repeat Simple_repeat 2 47 0 550 335 96 11 chr6 60766170 60766442 -128513112 - LTR16A LTR ERVL -97 353 59 645 152 33 26 chr6 60766612 60766763 -128512791 - L1MA9 LINE L1 -2 6310 6159 261 197 0 0 chr6 60766770 60766831 -128512723 + CT-rich Low_complexity Low_complexity 2 62 0 1202 207 93 23 chr6 60766834 60766869 -128512685 - L1MA9 LINE L1 -159 6153 6122 2384 88 3 0 chr6 60766869 60767174 -128512380 - AluSp SINE Alu -6 307 2 1202 207 93 23 chr6 60767174 60767438 -128512116 - L1MA9 LINE L1 -190 6122 5833 * 2561 170 22 14 chr6 60767423 60768222 -128511332 + L1M2 LINE L1 4915 5726 -586 10124 84 12 8 chr6 60768264 60770523 -128509031 - L1PA7 LINE L1 0 6154 3943 2470 158 71 2 chr6 60772354 60772791 -128506763 + MLT1C LTR MaLR 1 467 0 1344 133 0 0 chr6 60772890 60773120 -128506434 + L1PA7 LINE L1 5942 6171 0 256 154 46 0 chr6 60773563 60773628 -128505926 + (TATG)n Simple_repeat Simple_repeat 1 68 0 23 0 0 0 chr6 60775684 60775707 -128503847 + AT_rich Low_complexity Low_complexity 1 23 0 601 276 79 28 chr6 60777350 60777604 -128501950 + L1ME3A LINE L1 5639 5905 -265 2551 108 0 0 chr6 60777727 60778106 -128501448 + L1PA13 LINE L1 5785 6163 0 25 75 0 0 chr6 60778287 60778340 -128501214 + AT_rich Low_complexity Low_complexity 1 53 0 380 20 20 0 chr6 60780017 60780066 -128499488 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 229 313 36 41 chr6 60780300 60780495 -128499059 - HAL1 LINE L1 -48 2459 2266 454 293 59 69 chr6 60780781 60780887 -128498667 - HAL1 LINE L1 -914 1593 1487 2494 55 3 3 chr6 60780887 60781196 -128498358 - AluY SINE Alu -2 309 1 454 293 59 69 chr6 60781196 60781680 -128497874 - HAL1 LINE L1 -1020 1487 1009 6289 185 36 11 chr6 60781874 60783027 -128496527 + MSTB-int LTR MaLR 471 1651 0 2160 177 31 14 chr6 60783027 60783445 -128496109 + MSTB LTR MaLR 1 425 -1 225 0 0 0 chr6 60783445 60783470 -128496084 + (TG)n Simple_repeat Simple_repeat 1 25 0 1800 279 63 20 chr6 60783494 60784129 -128495425 - L1ME1 LINE L1 -93 6073 5412 529 277 10 10 chr6 60784143 60784338 -128495216 - L1ME LINE L1 -686 5480 5286 5284 272 59 23 chr6 60784405 60786957 -128492597 - L1ME LINE L1 -889 5257 2550 4990 164 33 3 chr6 60786957 60787834 -128491720 + MER4D LTR ERV1 1 903 0 5284 272 59 23 chr6 60787834 60787923 -128491631 - L1ME LINE L1 -3596 2550 2466 26 0 0 0 chr6 60788035 60788061 -128491493 + AT_rich Low_complexity Low_complexity 1 26 0 351 316 117 19 chr6 60788407 60788673 -128490881 + HAL1 LINE L1 1519 1810 -697 240 170 0 0 chr6 60788916 60788969 -128490585 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr6 60789637 60789658 -128489896 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr6 60790798 60790848 -128488706 + AT_rich Low_complexity Low_complexity 1 50 0 257 286 8 92 chr6 60791489 60791608 -128487946 + MIR3 SINE MIR 93 201 -7 2122 158 78 0 chr6 60792006 60792406 -128487148 - L1MA6 LINE L1 -376 5924 5494 238 192 40 40 chr6 60793114 60793213 -128486341 + (TTAAA)n Simple_repeat Simple_repeat 3 101 0 9481 174 27 10 chr6 60793261 60796013 -128483541 - L1MA3 LINE L1 -1 7723 4915 261 0 0 0 chr6 60796013 60796042 -128483512 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 9481 174 27 10 chr6 60796042 60796275 -128483279 - L1MA3 LINE L1 -2809 4915 4687 19139 163 29 25 chr6 60796276 60799794 -128479760 - L1MA3 LINE L1 -3977 3588 55 48 53 0 0 chr6 60799932 60800008 -128479546 + AT_rich Low_complexity Low_complexity 1 76 0 713 284 5 10 chr6 60800294 60800495 -128479059 + MER77 LTR ERV1 396 595 -10 1051 219 158 0 chr6 60800557 60800836 -128478718 + MER2 DNA MER2_type 22 344 -1 807 257 74 56 chr6 60800969 60801292 -128478262 + L1ME1 LINE L1 5831 6159 -7 274 238 155 0 chr6 60801346 60801430 -128478124 - L2 LINE L2 -9 3304 3208 27 0 0 0 chr6 60802587 60802614 -128476940 + AT_rich Low_complexity Low_complexity 1 27 0 284 376 0 16 chr6 60802704 60802829 -128476725 + MIR3 SINE MIR 54 176 -32 1404 194 63 0 chr6 60803558 60803857 -128475697 - L1MA8 LINE L1 -22 6269 5952 234 247 0 0 chr6 60804299 60804376 -128475178 + (CA)n Simple_repeat Simple_repeat 2 78 0 286 346 88 16 chr6 60805365 60805671 -128473883 + MARNA DNA Mariner 15 342 -244 7320 24 1 36 chr6 60806339 60807452 -128472102 + L1PA4 LINE L1 5073 6152 -3 1762 280 75 36 chr6 60808280 60808393 -128471161 + L1MEc LINE L1 23 130 -6266 207 0 0 0 chr6 60808393 60808416 -128471138 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1762 280 75 36 chr6 60808416 60809301 -128470253 + L1MEc LINE L1 130 1060 -5336 694 270 30 13 chr6 60809348 60809581 -128469973 - L1M4 LINE L1 -1206 4940 4704 1575 262 102 62 chr6 60811062 60811852 -128467702 + L1ME2 LINE L1 5328 6149 -15 519 142 28 28 chr6 60812837 60812943 -128466611 - MER53 DNA DNA -1 188 83 2801 104 26 0 chr6 60812944 60813328 -128466226 + MLT2A2 LTR ERVL 1 394 -59 310 55 55 55 chr6 60813425 60813480 -128466074 + MLT2A2 LTR ERVL 390 444 0 392 221 11 11 chr6 60813511 60813606 -128465948 - MER53 DNA DNA -94 95 1 1253 59 20 0 chr6 60815788 60816149 -128463405 + (GAAA)n Simple_repeat Simple_repeat 1 368 0 240 307 49 93 chr6 60817209 60817328 -128462226 + L2 LINE L2 734 843 -2471 2227 62 0 28 chr6 60817328 60817654 -128461900 - AluY SINE Alu 0 318 1 240 307 49 93 chr6 60817654 60817738 -128461816 + L2 LINE L2 843 929 -2385 1200 316 118 41 chr6 60817745 60818655 -128460899 + L2 LINE L2 1381 2360 -954 207 356 25 25 chr6 60818683 60818801 -128460753 + L2 LINE L2 2554 2671 -643 25 31 0 0 chr6 60818912 60818944 -128460610 + AT_rich Low_complexity Low_complexity 1 32 0 2374 194 24 2 chr6 60819235 60819745 -128459809 + L1MB2 LINE L1 5644 6164 -7 520 194 16 0 chr6 60822038 60822162 -128457392 + CT-rich Low_complexity Low_complexity 2 127 0 213 337 0 53 chr6 60822189 60822284 -128457270 - MIR SINE MIR -94 168 79 242 133 20 71 chr6 60823255 60823353 -128456201 + (TTATA)n Simple_repeat Simple_repeat 5 97 0 266 305 32 11 chr6 60824563 60824658 -128454896 + MER91A DNA MER1_type 2 98 -98 267 270 45 34 chr6 60824725 60824814 -128454740 + MIR SINE MIR 79 168 -94 28 0 0 0 chr6 60824818 60824846 -128454708 + AT_rich Low_complexity Low_complexity 1 28 0 201 133 0 0 chr6 60825663 60825693 -128453861 + (ATG)n Simple_repeat Simple_repeat 3 32 0 333 267 139 42 chr6 60828666 60828831 -128450723 - MIR SINE MIR -60 202 22 22 0 0 0 chr6 60829426 60829448 -128450106 + AT_rich Low_complexity Low_complexity 1 22 0 311 343 60 22 chr6 60829708 60829842 -128449712 - L2 LINE L2 0 3272 3134 184 276 83 64 chr6 60829924 60830080 -128449474 + L2 LINE L2 3145 3303 -10 889 285 24 0 chr6 60830289 60830542 -128449012 - MIR SINE MIR 0 262 4 186 339 0 32 chr6 60830777 60830839 -128448715 + MIR SINE MIR 7 66 -196 420 322 96 0 chr6 60830842 60830988 -128448566 + MLT1I LTR MaLR 6 165 -244 246 215 86 65 chr6 60831116 60831209 -128448345 + MIR SINE MIR 63 157 -105 186 337 81 47 chr6 60831342 60831514 -128448040 - L2 LINE L2 -766 2548 2371 216 329 98 28 chr6 60831866 60832009 -128447545 + MIR SINE MIR 99 251 -11 28 48 0 0 chr6 60832134 60832176 -128447378 + AT_rich Low_complexity Low_complexity 1 42 0 2277 67 0 3 chr6 60832537 60832857 -128446697 + AluY SINE Alu 1 319 0 21 0 0 0 chr6 60833248 60833269 -128446285 + AT_rich Low_complexity Low_complexity 1 21 0 395 288 77 12 chr6 60833480 60833650 -128445904 + L1MEc LINE L1 39 219 -6177 237 199 0 0 chr6 60834254 60834327 -128445227 + L1MEc LINE L1 813 885 -5320 * 4045 158 19 6 chr6 60834319 60835131 -128444423 + L1MA8 LINE L1 5155 5969 -322 203 401 8 15 chr6 60836120 60836252 -128443302 - MIR SINE MIR -112 150 20 218 330 275 9 chr6 60836467 60836576 -128442978 + L2 LINE L2 3116 3253 -19 234 152 0 0 chr6 60836660 60836706 -128442848 + LTR66 LTR ERVL 394 439 -171 232 170 43 0 chr6 60836854 60836901 -128442653 - L1MB7 LINE L1 -8 6176 6128 194 337 20 41 chr6 60836940 60837038 -128442516 - MIR SINE MIR -48 214 119 2504 71 0 0 chr6 60837061 60837371 -128442183 - AluY SINE Alu -1 310 1 324 239 128 18 chr6 60838021 60838130 -128441424 + L2 LINE L2 3193 3313 0 4082 133 39 0 chr6 60840232 60840907 -128438647 - Tigger3(Golem) DNA MER2_type 0 3029 2329 3738 300 29 29 chr6 60840917 60842457 -128437097 + L1PBa LINE L1 3 1542 -5321 2488 178 56 9 chr6 60842453 60843313 -128436241 + L1PBb LINE L1 711 1614 -4590 * 31 76 0 0 chr6 60843340 60843406 -128436148 + AT_rich Low_complexity Low_complexity 1 66 0 197 303 129 37 chr6 60843721 60843962 -128435592 + L3 LINE CR1 1242 1504 -73 933 244 92 62 chr6 60844282 60844683 -128434871 - MLT1C LTR MaLR -2 465 53 3293 96 125 118 chr6 60844933 60846045 -128433509 - pTR5 LTR ERV1 0 2438 990 430 148 0 0 chr6 60846281 60846362 -128433192 + pTR5 LTR ERV1 743 823 -1615 3242 101 120 115 chr6 60846368 60847482 -128432072 + pTR5 LTR ERV1 990 2438 0 311 233 17 41 chr6 60847798 60847970 -128431584 + (TTATA)n Simple_repeat Simple_repeat 3 170 0 5960 150 78 9 chr6 60848273 60849356 -128430198 + L1PB1 LINE L1 1 1157 -5706 7087 136 47 13 chr6 60849360 60850468 -128429086 + L1PB1 LINE L1 1311 2380 -4482 1465 114 0 5 chr6 60850468 60850669 -128428885 - AluSg/x SINE Alu -13 299 100 7087 136 47 13 chr6 60850669 60851889 -128427665 + L1PB1 LINE L1 2380 3708 -3154 7217 199 115 8 chr6 60851889 60853475 -128426079 + MER52A LTR ERV1 1 1755 0 8859 201 28 5 chr6 60853478 60856234 -128423320 + L1PB1 LINE L1 3708 6507 -360 243 0 0 0 chr6 60856300 60856327 -128423227 + (TA)n Simple_repeat Simple_repeat 2 28 0 2524 103 5 3 chr6 60856328 60856695 -128422859 + L1PB1 LINE L1 6500 6867 0 1002 273 26 23 chr6 60858220 60858605 -128420949 + L1MCc LINE L1 53 438 -5985 23 33 0 0 chr6 60909365 60909395 -128370159 + AT_rich Low_complexity Low_complexity 1 30 0 1328 181 41 23 chr6 60909787 60910097 -128369457 - MER61B LTR ERV1 -15 409 1 22 0 0 0 chr6 60911542 60911564 -128367990 + AT_rich Low_complexity Low_complexity 1 22 0 6909 32 0 6 chr6 60911564 60912397 -128367157 - L1PA4 LINE L1 -1 6154 5327 1158 65 0 0 chr6 60912395 60912550 -128367004 + L1P LINE L1 3294 3448 -2698 * 765 218 70 14 chr6 60913557 60913756 -128365798 + L1MB1 LINE L1 5971 6159 -9 23 68 0 0 chr6 60914402 60914446 -128365108 + AT_rich Low_complexity Low_complexity 1 44 0 24 53 0 0 chr6 60914798 60914836 -128364718 + AT_rich Low_complexity Low_complexity 1 38 0 5030 213 54 64 chr6 60915043 60915732 -128363822 - L1MC4a LINE L1 0 7808 7114 180 0 0 0 chr6 60915732 60915752 -128363802 + (TC)n Simple_repeat Simple_repeat 1 20 0 1714 142 29 4 chr6 60915753 60916027 -128363527 - AluJb SINE Alu -31 281 1 5030 213 54 64 chr6 60916027 60916899 -128362655 - L1MC4a LINE L1 -693 7115 6260 340 216 182 7 chr6 60918272 60918420 -128361134 + MER104 DNA Tc2 4 177 -3 458 320 32 45 chr6 60918420 60918667 -128360887 + L2 LINE L2 2288 2531 -783 453 246 63 8 chr6 60918735 60918861 -128360693 - L1ME1 LINE L1 -7 6159 6027 295 175 35 0 chr6 60918873 60918930 -128360624 - L1ME1 LINE L1 -206 5958 5900 1163 43 0 38 chr6 60918944 60919130 -128360424 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2064 109 4 0 chr6 60919130 60919406 -128360148 - AluSc SINE Alu -32 277 1 18488 153 19 11 chr6 60919412 60925801 -128353753 - L1PA8 LINE L1 -3 6484 1 1465 244 6 6 chr6 60925800 60926153 -128353401 - L1ME1 LINE L1 -255 5909 5557 * 561 298 80 34 chr6 60926427 60926779 -128352775 + LTR52 LTR ERVL 3 370 -51 659 280 69 0 chr6 60927160 60927335 -128352219 + MER5A DNA MER1_type 1 187 -2 28 29 0 0 chr6 60927674 60927709 -128351845 + AT_rich Low_complexity Low_complexity 1 35 0 705 360 67 38 chr6 60927709 60928487 -128351067 + L2 LINE L2 2495 3304 -9 1270 237 36 24 chr6 60928916 60929253 -128350301 + MER58B DNA MER1_type 1 341 0 336 94 0 0 chr6 60931612 60931665 -128347889 + (TG)n Simple_repeat Simple_repeat 2 54 0 286 339 55 9 chr6 60932154 60932289 -128347265 - MIR SINE MIR -64 144 3 331 337 0 0 chr6 60932858 60932950 -128346604 + MIR SINE MIR 49 140 -122 2168 66 0 0 chr6 60932983 60933256 -128346298 + AluY SINE Alu 39 311 0 1379 184 80 69 chr6 60934816 60935250 -128344304 - THE1B LTR MaLR 0 428 1 11190 110 2 1 chr6 60935250 60936827 -128342727 - THE1B-int LTR MaLR 0 1580 1 2119 130 51 25 chr6 60936827 60937182 -128342372 - THE1B LTR MaLR 0 364 1 1958 139 0 0 chr6 60937508 60937821 -128341733 + AluSx SINE Alu 3 315 0 6166 96 7 10 chr6 60937822 60938985 -128340569 + L1PB1 LINE L1 4990 6150 -1 939 273 99 14 chr6 60939637 60939989 -128339565 + MLT1J1 LTR MaLR 1 382 -64 232 170 0 0 chr6 60940008 60940055 -128339499 + T-rich Low_complexity Low_complexity 1 47 0 307 317 80 10 chr6 60940234 60940433 -128339121 - L1M4 LINE L1 -968 5178 4966 738 176 11 11 chr6 60940731 60940907 -128338647 - L1MA6 LINE L1 0 6300 6125 4208 203 43 16 chr6 60940926 60942302 -128337252 - L1MA6 LINE L1 -69 6231 4814 * 7539 216 72 18 chr6 60942286 60944313 -128335241 - L1MA6 LINE L1 -1899 4247 2112 224 0 65 0 chr6 60944489 60944520 -128335034 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 1407 175 58 31 chr6 60944523 60944814 -128334740 - AluJo SINE Alu -5 307 9 53 40 0 0 chr6 60945036 60945110 -128334444 + AT_rich Low_complexity Low_complexity 1 74 0 207 0 0 0 chr6 60945226 60945249 -128334305 + (T)n Simple_repeat Simple_repeat 1 23 0 2217 104 0 10 chr6 60945645 60945952 -128333602 - AluSx SINE Alu -8 304 1 1837 73 92 11 chr6 60946017 60946305 -128333249 - AluY SINE Alu 0 309 1 194 292 108 0 chr6 60946903 60946968 -128332586 + L3 LINE CR1 1041 1112 -465 484 305 30 0 chr6 60947765 60947896 -128331658 - MER5A DNA MER1_type 0 189 55 1013 162 18 0 chr6 60948358 60948525 -128331029 - FRAM SINE Alu -8 168 1 184 194 167 14 chr6 60948560 60948632 -128330922 + MIR SINE MIR 124 206 -56 21 0 0 0 chr6 60949829 60949850 -128329704 + AT_rich Low_complexity Low_complexity 1 21 0 642 130 0 0 chr6 60950263 60950371 -128329183 + (GGA)n Simple_repeat Simple_repeat 2 109 0 359 301 26 9 chr6 60950799 60950912 -128328642 + MIR SINE MIR 117 231 -31 22 35 0 0 chr6 60951450 60951479 -128328075 + AT_rich Low_complexity Low_complexity 1 29 0 535 265 107 5 chr6 60951562 60951748 -128327806 + MLT1A1 LTR MaLR 26 206 -389 2079 108 20 0 chr6 60951792 60952088 -128327466 + AluSg SINE Alu 1 302 -8 1788 142 155 31 chr6 60952555 60952936 -128326618 - MSTA LTR MaLR 0 428 1 275 172 86 0 chr6 60953044 60953102 -128326452 + MLT2B3 LTR ERVL 9 71 -483 1374 237 50 31 chr6 60953199 60953557 -128325997 + MLT2B3 LTR ERVL 75 439 -115 797 213 50 30 chr6 60953558 60953760 -128325794 + MLT1A1 LTR MaLR 160 365 0 554 308 81 19 chr6 60953993 60954204 -128325350 - MIR SINE MIR -7 255 32 884 216 10 34 chr6 60954303 60954507 -128325047 + MER105 DNA DNA 1 199 -5 248 222 69 0 chr6 60954564 60954636 -128324918 - MLT1K LTR MaLR -7 581 505 2032 161 25 6 chr6 60957068 60957423 -128322131 - THE1B LTR MaLR 0 364 3 238 250 13 13 chr6 60957620 60957696 -128321858 + A-rich Low_complexity Low_complexity 6 81 0 935 131 0 0 chr6 60957730 60957867 -128321687 + FRAM SINE Alu 32 168 -8 618 282 83 62 chr6 60957869 60958513 -128321041 + HAL1b LINE L1 282 800 -548 219 103 0 0 chr6 60958784 60958823 -128320731 + (GA)n Simple_repeat Simple_repeat 2 40 0 694 159 7 58 chr6 60959093 60959231 -128320323 - FLAM_C SINE Alu -2 131 1 302 298 0 0 chr6 60959587 60959671 -128319883 + L1M4 LINE L1 2739 2822 -3324 22 35 0 0 chr6 60959764 60959793 -128319761 + AT_rich Low_complexity Low_complexity 1 29 0 192 77 0 0 chr6 60959859 60959885 -128319669 + (CATA)n Simple_repeat Simple_repeat 2 27 0 322 232 88 16 chr6 60959886 60960011 -128319543 + L1M4 LINE L1 3069 3202 -2944 390 252 26 0 chr6 60960211 60960326 -128319228 + MER20 DNA MER1_type 98 215 -4 1010 315 79 32 chr6 60960449 60961208 -128318346 + L1M4 LINE L1 4109 4903 -1243 622 186 0 25 chr6 60961219 60961337 -128318217 + AluJb SINE Alu 174 288 -24 3564 246 84 67 chr6 60961665 60962526 -128317028 + L1M4 LINE L1 27 872 -5772 405 0 0 0 chr6 60962526 60962571 -128316983 + (CA)n Simple_repeat Simple_repeat 2 46 0 3564 246 84 67 chr6 60962571 60963765 -128315789 + L1M4 LINE L1 872 2044 -4600 2529 65 0 0 chr6 60963765 60964072 -128315482 + AluY SINE Alu 1 307 -4 3564 246 84 67 chr6 60964072 60965993 -128313561 + L1M4 LINE L1 2044 4136 -2508 587 121 59 44 chr6 60965993 60966162 -128313392 - MLT1B LTR MaLR -170 220 1 1687 199 40 10 chr6 60967609 60968006 -128311548 + L1MD3 LINE L1 7577 7985 -10 28 29 0 0 chr6 60969119 60969154 -128310400 + AT_rich Low_complexity Low_complexity 1 35 0 188 35 35 0 chr6 60969725 60969754 -128309800 + (TTTTTA)n Simple_repeat Simple_repeat 5 34 0 192 330 75 21 chr6 60973055 60973149 -128306405 + L2 LINE L2 3171 3269 -3 236 30 30 0 chr6 60973937 60973970 -128305584 + (GA)n Simple_repeat Simple_repeat 2 35 0 383 325 0 8 chr6 60975922 60976048 -128303506 + CT-rich Low_complexity Low_complexity 3 127 0 1791 136 28 163 chr6 60976191 60976876 -128302678 - MER4A LTR ERV1 0 465 1 311 0 0 25 chr6 60977024 60977064 -128302490 + (TTTTC)n Simple_repeat Simple_repeat 5 43 0 205 250 0 0 chr6 60977393 60977437 -128302117 + CT-rich Low_complexity Low_complexity 1 44 0 908 278 23 46 chr6 60977439 60977745 -128301809 - L1M4 LINE L1 -6084 458 160 3975 146 54 0 chr6 60977752 60978377 -128301177 + LTR28 LTR ERV1 3 661 -359 806 223 0 0 chr6 60978392 60978540 -128301014 + LTR28 LTR ERV1 763 910 -110 653 265 0 6 chr6 60978561 60978731 -128300823 - L1M4 LINE L1 -6372 170 2 191 204 20 0 chr6 60978800 60978849 -128300705 + CT-rich Low_complexity Low_complexity 5 54 0 27 0 0 0 chr6 60979591 60979618 -128299936 + AT_rich Low_complexity Low_complexity 1 27 0 2062 136 25 35 chr6 60980986 60981354 -128298200 - THE1B LTR MaLR 0 364 1 10631 116 19 2 chr6 60981400 60982938 -128296616 - THE1B-int LTR MaLR -16 1564 1 2293 118 25 25 chr6 60982938 60983302 -128296252 - THE1B LTR MaLR 0 364 1 1372 214 14 43 chr6 60983310 60983703 -128295851 + MER67C LTR ERV1 1 404 -236 339 25 0 0 chr6 60983723 60983763 -128295791 + (CA)n Simple_repeat Simple_repeat 2 41 0 385 231 91 8 chr6 60983770 60983891 -128295663 + MER67D LTR ERV1 381 511 -3 27 0 0 0 chr6 60984357 60984384 -128295170 + AT_rich Low_complexity Low_complexity 1 27 0 329 254 185 121 chr6 60984567 60984897 -128294657 + L3 LINE CR1 1132 1482 -95 228 163 0 0 chr6 60985437 60985480 -128294074 + T-rich Low_complexity Low_complexity 1 43 0 2472 199 28 14 chr6 60986078 60986580 -128292974 + L1PA16 LINE L1 1 509 -6340 * 9315 225 100 19 chr6 60986573 60990283 -128289271 + L1PA16 LINE L1 2725 6754 -115 2419 84 0 0 chr6 60990283 60990593 -128288961 - AluY SINE Alu -1 310 1 9315 225 100 19 chr6 60990593 60990713 -128288841 + L1PA16 LINE L1 6754 6863 -6 286 407 111 25 chr6 60991208 60991488 -128288066 - L2 LINE L2 -11 3261 2958 228 362 21 14 chr6 60991515 60991656 -128287898 - LTR16A LTR ERVL -154 296 155 1531 273 57 19 chr6 60991789 60992771 -128286783 + L1MA6 LINE L1 2850 3873 -3692 349 247 6 22 chr6 60992827 60993009 -128286545 + (TA)n Simple_repeat Simple_repeat 2 180 0 10846 199 69 31 chr6 60993019 60996711 -128282843 + L1MA6 LINE L1 3867 7710 -9 235 307 114 0 chr6 60996745 60996833 -128282721 - LTR16A LTR ERVL -345 105 8 243 283 72 51 chr6 60997023 60997161 -128282393 - L2 LINE L2 -8 3305 3165 632 335 129 46 chr6 60997290 60998003 -128281551 + L3 LINE CR1 229 1000 -577 923 238 54 12 chr6 60998013 60998253 -128281301 - MER67C LTR ERV1 -460 250 1 1684 205 7 0 chr6 60998749 60999056 -128280498 + AluJo SINE Alu 1 309 -3 6690 137 13 16 chr6 60999324 61000454 -128279100 - L1MA2 LINE L1 -4 6300 5168 1499 153 114 0 chr6 61000454 61000732 -128278822 - AluSx SINE Alu 0 307 1 6690 137 13 16 chr6 61000732 61000894 -128278660 - L1MA2 LINE L1 -1136 5168 5007 2746 19 0 3 chr6 61000894 61001205 -128278349 - AluYb8 SINE Alu -8 310 1 6690 137 13 16 chr6 61001205 61001625 -128277929 - L1MA2 LINE L1 -1297 5007 4595 5744 72 32 1 chr6 61001644 61002421 -128277133 - L1PA8 LINE L1 -13 6159 5359 4418 119 9 0 chr6 61002408 61003097 -128276457 + L1PA8 LINE L1 4659 5353 -793 * 18309 170 49 27 chr6 61003077 61003954 -128275600 - L1 LINE L1 -3346 4219 3363 2305 107 0 0 chr6 61003954 61004253 -128275301 - AluY SINE Alu -12 299 1 18309 170 49 27 chr6 61004253 61007489 -128272065 - L1 LINE L1 -4202 3363 10 490 301 97 10 chr6 61007545 61007741 -128271813 - MIR SINE MIR -1 261 49 561 265 14 7 chr6 61008165 61008312 -128271242 + MER5B DNA MER1_type 30 177 -1 183 333 118 21 chr6 61008424 61008517 -128271037 - L2 LINE L2 -19 3253 3152 267 291 35 0 chr6 61009702 61009788 -128269766 + LTR48B LTR ERV1 1 89 -555 * 1041 236 127 36 chr6 61009774 61010185 -128269369 + MER39 LTR ERV1 260 707 0 465 264 118 11 chr6 61010185 61010363 -128269191 - L2 LINE L2 -1421 1893 1697 4288 99 7 54 chr6 61010377 61011075 -128268479 - L1PB1 LINE L1 -5 6146 5482 198 0 0 0 chr6 61011118 61011140 -128268414 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2431 92 0 0 chr6 61011140 61011468 -128268086 - L1PB1 LINE L1 -42 6109 5782 347 85 49 0 chr6 61011475 61011557 -128267997 + (TA)n Simple_repeat Simple_repeat 1 86 0 3010 93 7 5 chr6 61011557 61011996 -128267558 - L1PB1 LINE L1 -360 5791 5352 * 3120 142 4 8 chr6 61011977 61012476 -128267078 - L1PBa LINE L1 -5015 1848 1352 2891 129 20 0 chr6 61012456 61012912 -128266642 - L1PBa LINE L1 -5404 1459 995 * 1109 151 0 20 chr6 61012908 61013107 -128266447 - L1PBa LINE L1 -6665 198 4 * 3377 307 118 23 chr6 61013126 61014685 -128264869 - L2 LINE L2 -1607 1707 1 265 393 67 7 chr6 61015261 61015396 -128264158 + L2 LINE L2 3118 3260 -12 297 343 30 47 chr6 61015590 61015759 -128263795 + MIR SINE MIR 41 206 -56 7402 98 6 19 chr6 61016529 61017600 -128261954 - MER11C LTR ERVK -14 1057 1 243 61 0 0 chr6 61017876 61017909 -128261645 + (CAGAGA)n Simple_repeat Simple_repeat 3 35 0 1280 254 3 10 chr6 61018749 61019044 -128260510 - AluJo SINE Alu -19 293 1 3839 249 53 14 chr6 61019156 61020159 -128259395 + L1MD1 LINE L1 19 1060 -5480 1841 159 98 28 chr6 61020174 61020601 -128258953 + L1MA8 LINE L1 5770 6226 -65 1917 125 25 4 chr6 61020633 61020913 -128258641 + AluSc SINE Alu 4 289 -20 21 0 0 0 chr6 61020944 61020965 -128258589 + AT_rich Low_complexity Low_complexity 1 21 0 1003 195 88 26 chr6 61021042 61021349 -128258205 + L1MD1 LINE L1 1111 1436 -5104 1305 139 9 0 chr6 61021354 61021569 -128257985 + L1PA15 LINE L1 5945 6161 -4 308 196 0 43 chr6 61021610 61021702 -128257852 + L1MD1 LINE L1 1426 1513 -5030 * 5002 184 11 26 chr6 61021687 61023056 -128256498 + L1PA15 LINE L1 4816 6165 0 450 218 103 12 chr6 61023081 61023259 -128256295 + L1MD1 LINE L1 1424 1708 -4832 * 4330 181 31 16 chr6 61023256 61024162 -128255392 + L1MD1 LINE L1 5701 6620 -16 989 189 46 132 chr6 61024743 61025023 -128254531 + AluJo SINE Alu 27 282 -30 23 54 0 0 chr6 61025111 61025148 -128254406 + AT_rich Low_complexity Low_complexity 1 37 0 1931 142 30 7 chr6 61025271 61025574 -128253980 + AluSx SINE Alu 1 310 -2 229 229 60 36 chr6 61025679 61025762 -128253792 + L2 LINE L2 3225 3309 -4 1877 60 0 0 chr6 61026057 61026292 -128253262 - L1PA7 LINE L1 -341 5813 5579 2588 49 11 20 chr6 61026292 61026635 -128252919 + L1PA7 LINE L1 5809 6154 0 3119 199 24 3 chr6 61026771 61027439 -128252115 - L1 LINE L1 -1368 4778 4097 1019 80 0 0 chr6 61028413 61028551 -128251003 - AluY SINE Alu 0 311 174 2430 53 10 0 chr6 61028623 61028927 -128250627 + AluY SINE Alu 1 307 -4 712 246 163 0 chr6 61028946 61029149 -128250405 + MIR SINE MIR 15 250 -12 2146 59 93 17 chr6 61030527 61030816 -128248738 - AluY SINE Alu 0 311 1 323 335 51 33 chr6 61031358 61031573 -128247981 + L1MDa LINE L1 2810 3028 -3512 220 136 23 23 chr6 61031689 61031733 -128247821 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 1743 198 22 25 chr6 61032590 61032948 -128246606 - MLT1A1 LTR MaLR 0 365 9 2393 92 48 53 chr6 61033204 61033583 -128245971 + MER51B LTR ERV1 1 377 0 198 208 0 0 chr6 61033685 61033733 -128245821 + T-rich Low_complexity Low_complexity 1 48 0 238 176 81 29 chr6 61036137 61036206 -128243348 + MIR SINE MIR 53 132 -76 273 281 80 68 chr6 61036697 61036903 -128242651 - MIR3 SINE MIR -9 253 48 22 35 0 0 chr6 61037537 61037566 -128241988 + AT_rich Low_complexity Low_complexity 1 29 0 2151 111 4 0 chr6 61037916 61038195 -128241359 - AluSx SINE Alu -30 282 3 308 337 62 17 chr6 61038707 61038885 -128240669 - MIR3 SINE MIR -3 205 20 1436 259 94 105 chr6 61038947 61040053 -128239501 - MER52A LTR ERV1 -3 1752 659 21 36 0 0 chr6 61040184 61040212 -128239342 + AT_rich Low_complexity Low_complexity 1 28 0 313 263 105 38 chr6 61040212 61040345 -128239209 + L1MC5 LINE L1 4757 4898 -1248 395 313 94 49 chr6 61040405 61040670 -128238884 - MLT1J LTR MaLR -7 504 228 392 327 72 40 chr6 61041187 61041685 -128237869 + L1MC5 LINE L1 5265 5778 -2030 30 0 0 0 chr6 61041693 61041723 -128237831 + AT_rich Low_complexity Low_complexity 1 30 0 3462 166 21 2 chr6 61041917 61042524 -128237030 + LTR31 LTR ERV1 1 619 0 339 85 0 0 chr6 61042882 61042929 -128236625 + (GAAAA)n Simple_repeat Simple_repeat 4 50 0 270 314 63 40 chr6 61043021 61043196 -128236358 + L2 LINE L2 1324 1502 -1812 2176 111 3 0 chr6 61043272 61043570 -128235984 + AluSp SINE Alu 1 299 -14 27 73 0 0 chr6 61043630 61043685 -128235869 + AT_rich Low_complexity Low_complexity 1 55 0 1437 240 36 91 chr6 61043685 61044539 -128235015 + L1MC5 LINE L1 6760 7566 -395 263 354 21 35 chr6 61044761 61044905 -128234649 + L2 LINE L2 3168 3309 -4 858 245 36 31 chr6 61044959 61045318 -128234236 + L1MC5 LINE L1 7553 7913 -48 504 335 56 22 chr6 61045332 61045687 -128233867 + L2 LINE L2 1705 2071 -1243 275 375 35 0 chr6 61046040 61046184 -128233370 + L2 LINE L2 3159 3307 -6 261 201 158 103 chr6 61046347 61046531 -128233023 - MER112 DNA MER1_type -1 259 66 24 32 0 0 chr6 61047497 61047528 -128232026 + AT_rich Low_complexity Low_complexity 1 31 0 4838 106 45 14 chr6 61048955 61049684 -128229870 + L1P LINE L1 11 762 -5384 4095 144 33 68 chr6 61049684 61050889 -128228665 + pTR5 LTR ERV1 6 558 -156 23900 54 4 1 chr6 61050897 61056310 -128223244 + L1PA5 LINE L1 731 6154 0 209 115 31 62 chr6 61056337 61056433 -128223121 + (TATAA)n Simple_repeat Simple_repeat 2 94 0 415 162 5 73 chr6 61056456 61056647 -128222907 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 225 200 12 38 chr6 61056768 61056848 -128222706 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 182 121 52 43 chr6 61056863 61056979 -128222575 + (TATAA)n Simple_repeat Simple_repeat 2 118 0 282 239 22 28 chr6 61057007 61057187 -128222367 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 207 170 0 0 chr6 61057188 61057235 -128222319 + (TTATA)n Simple_repeat Simple_repeat 1 47 0 592 110 22 0 chr6 61058241 61058332 -128221222 - MER85 DNA T2_type 0 139 47 23 33 0 0 chr6 61058458 61058488 -128221066 + AT_rich Low_complexity Low_complexity 1 30 0 29 47 0 0 chr6 61059208 61059251 -128220303 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr6 61059496 61059521 -128220033 + AT_rich Low_complexity Low_complexity 1 25 0 4019 179 40 28 chr6 61059527 61060420 -128219134 - L1MA6 LINE L1 0 6300 5397 13552 162 28 5 chr6 61060429 61062772 -128216782 - Tigger1 DNA MER2_type 0 2418 22 3363 158 27 30 chr6 61062778 61063482 -128216072 - L1MA6 LINE L1 -765 5381 4680 1207 248 45 13 chr6 61063589 61063629 -128215925 - L1 LINE L1 -2974 3172 3135 741 117 9 0 chr6 61063629 61063740 -128215814 - L1PA10 LINE L1 0 6168 6057 1207 248 45 13 chr6 61063740 61064101 -128215453 - L1 LINE L1 -3011 3135 2754 2442 31 7 0 chr6 61065125 61065418 -128214136 + L1PA4 LINE L1 5860 6154 -1 23 0 0 0 chr6 61065704 61065727 -128213827 + AT_rich Low_complexity Low_complexity 1 23 0 29 21 0 21 chr6 61065973 61065997 -128213557 + AT_rich Low_complexity Low_complexity 1 25 -21 1730 162 4 0 chr6 61065997 61066268 -128213286 - AluSx SINE Alu -24 288 17 29 21 0 21 chr6 61066268 61066290 -128213264 + AT_rich Low_complexity Low_complexity 25 46 0 31 82 0 0 chr6 61066550 61066623 -128212931 + AT_rich Low_complexity Low_complexity 1 73 0 473 319 81 8 chr6 61066817 61067288 -128212266 + L1M4 LINE L1 2136 2640 -3506 724 333 85 19 chr6 61067352 61067895 -128211659 + MERVL LTR ERVL 2951 3531 -1954 1689 164 64 31 chr6 61067933 61068292 -128211262 + THE1C LTR MaLR 5 375 0 22 35 0 0 chr6 61068408 61068437 -128211117 + AT_rich Low_complexity Low_complexity 1 29 0 313 291 79 12 chr6 61068590 61068755 -128210799 - L1 LINE L1 -3804 2342 2167 6079 98 11 6 chr6 61068757 61069721 -128209833 + L1PA13 LINE L1 5187 6163 0 22 0 0 0 chr6 61069721 61069743 -128209811 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 61069752 61069778 -128209776 + AT_rich Low_complexity Low_complexity 1 26 0 369 311 82 22 chr6 61069789 61069972 -128209582 - LTR67 LTR ERVL -277 280 87 2102 114 0 35 chr6 61070190 61070505 -128209049 - AluSc SINE Alu -5 304 1 1502 225 177 51 chr6 61071937 61072605 -128206949 - LTR1B LTR ERV1 -74 752 1 608 314 104 25 chr6 61072610 61073043 -128206511 + L2 LINE L2 1289 1755 -1559 215 398 108 0 chr6 61073076 61073307 -128206247 + L2 LINE L2 1996 2251 -1063 251 343 103 11 chr6 61073528 61073703 -128205851 + L2 LINE L2 2289 2479 -835 222 37 0 0 chr6 61074159 61074186 -128205368 + (CA)n Simple_repeat Simple_repeat 2 28 0 364 269 28 55 chr6 61074999 61075144 -128204410 + MIR SINE MIR 68 208 -54 36 40 0 0 chr6 61076362 61076412 -128203142 + AT_rich Low_complexity Low_complexity 1 50 0 850 146 11 70 chr6 61076455 61076640 -128202914 - L1 LINE L1 -2679 3467 3294 1855 142 77 30 chr6 61076649 61077015 -128202539 + L1MA6 LINE L1 5711 6093 -207 575 293 5 0 chr6 61077031 61077219 -128202335 + L1PA16 LINE L1 6 194 -6669 * 8606 146 80 20 chr6 61077195 61079163 -128200391 + L1PA16 LINE L1 872 3130 -3732 801 221 5 16 chr6 61079164 61079354 -128200200 + L1MA6 LINE L1 6077 6264 -36 21 36 0 0 chr6 61079368 61079396 -128200158 + AT_rich Low_complexity Low_complexity 1 28 0 383 282 154 0 chr6 61080452 61080601 -128198953 + MIR SINE MIR 18 189 -73 2191 97 7 13 chr6 61082372 61082680 -128196874 - AluY SINE Alu -1 310 5 5372 147 22 4 chr6 61082905 61083870 -128195684 + L1PA16 LINE L1 5887 6866 -16 856 336 66 46 chr6 61084350 61084940 -128194614 + L1MEd LINE L1 1019 1620 -4910 356 218 57 16 chr6 61084985 61085109 -128194445 + L1MEd LINE L1 1875 2003 -4537 2602 259 48 42 chr6 61085182 61085218 -128194336 + L1MCb LINE L1 1 35 -6010 288 0 0 0 chr6 61085218 61085250 -128194304 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2602 259 48 42 chr6 61085250 61086156 -128193398 + L1MCb LINE L1 35 948 -5097 2397 263 92 29 chr6 61086213 61087485 -128192069 + L1M2a LINE L1 1469 2786 -4382 764 121 175 54 chr6 61087487 61087653 -128191901 - AluY SINE Alu -18 293 108 9451 180 66 98 chr6 61087656 61089877 -128189677 + L1MA8 LINE L1 2857 5147 -2563 1686 202 33 6 chr6 61089877 61090208 -128189346 - MER2 DNA MER2_type -5 340 1 9451 180 66 98 chr6 61090208 61091089 -128188465 + L1MA8 LINE L1 5147 6054 -1656 5054 82 135 0 chr6 61091089 61091817 -128187737 - LTR12 LTR ERV1 0 826 1 9451 180 66 98 chr6 61091817 61093383 -128186171 + L1MA8 LINE L1 6054 7709 -1 516 290 25 37 chr6 61093763 61094151 -128185403 + LTR33 LTR ERVL 49 521 0 233 253 0 27 chr6 61094727 61094802 -128184752 + T-rich Low_complexity Low_complexity 2 74 0 185 300 50 93 chr6 61096589 61096729 -128182825 + L2 LINE L2 2737 2870 -444 183 253 74 84 chr6 61096950 61097045 -128182509 + L2 LINE L2 3169 3262 -51 187 313 30 15 chr6 61097112 61097179 -128182375 + MIR3 SINE MIR 113 180 -28 5215 119 10 6 chr6 61098152 61098973 -128180581 + L1PB2 LINE L1 5327 6150 -1 381 300 81 26 chr6 61099116 61099501 -128180053 + L1MCb LINE L1 1311 1567 -4999 24 0 0 0 chr6 61099615 61099639 -128179915 + AT_rich Low_complexity Low_complexity 1 24 0 1795 123 80 52 chr6 61100003 61100368 -128179186 - THE1C LTR MaLR 0 375 1 440 279 51 30 chr6 61101121 61101318 -128178236 - L2 LINE L2 0 3313 3113 4041 216 44 41 chr6 61101849 61102516 -128177038 + L1MCc LINE L1 1 664 -5871 231 61 0 0 chr6 61102516 61102549 -128177005 + (CA)n Simple_repeat Simple_repeat 1 33 0 4041 216 44 41 chr6 61102549 61103168 -128176386 + L1MCc LINE L1 664 1651 -4884 1526 84 67 4 chr6 61103168 61103393 -128176161 - MER75B DNA T2_type -4 239 1 4041 216 44 41 chr6 61103393 61103428 -128176126 + L1MCc LINE L1 1651 1684 -4851 21 0 0 0 chr6 61103796 61103817 -128175737 + AT_rich Low_complexity Low_complexity 1 21 0 380 276 19 9 chr6 61103832 61103937 -128175617 + L1ME LINE L1 387 492 -5553 288 198 22 11 chr6 61103933 61104024 -128175530 + CT-rich Low_complexity Low_complexity 1 92 0 * 344 351 14 34 chr6 61104165 61104313 -128175241 - MIR SINE MIR -115 147 3 1711 276 77 16 chr6 61106410 61106582 -128172972 + MLT1F LTR MaLR 13 173 -369 495 0 0 0 chr6 61106582 61106637 -128172917 + (TC)n Simple_repeat Simple_repeat 1 55 0 1711 276 77 16 chr6 61106637 61106957 -128172597 + MLT1F LTR MaLR 173 535 -7 329 341 23 15 chr6 61107255 61107387 -128172167 + L2 LINE L2 2807 2939 -374 273 390 0 0 chr6 61107488 61107634 -128171920 + L2 LINE L2 3160 3305 -8 972 202 5 5 chr6 61107818 61108006 -128171548 - MER5A DNA MER1_type -1 188 1 22 0 0 0 chr6 61108479 61108501 -128171053 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 61108605 61108634 -128170920 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr6 61108944 61108966 -128170588 + (A)n Simple_repeat Simple_repeat 1 22 0 2295 220 57 70 chr6 61109906 61111024 -128168530 + L1ME LINE L1 3085 4188 -2376 1339 173 40 11 chr6 61111041 61111313 -128168241 - LTR4 LTR ERV1 0 596 317 261 211 53 0 chr6 61111398 61111455 -128168099 - LTR4 LTR ERV1 -239 357 298 2611 235 120 52 chr6 61111605 61111742 -128167812 + L1ME LINE L1 4204 4330 -2252 353 100 0 0 chr6 61111742 61111792 -128167762 + U5 snRNA snRNA 1 50 -66 2611 235 120 52 chr6 61111792 61113301 -128166253 + L1ME LINE L1 4330 6023 -559 1648 228 37 95 chr6 61113411 61114061 -128165493 + LTR9 LTR ERV1 1 612 0 205 352 48 0 chr6 61114123 61114228 -128165326 + MIR SINE MIR 103 212 -50 222 269 0 0 chr6 61114543 61114595 -128164959 + (TG)n Simple_repeat Simple_repeat 2 53 0 403 156 13 13 chr6 61115134 61115211 -128164343 + MER4A LTR ERV1 22 98 -566 1549 111 13 140 chr6 61115211 61115607 -128163947 + MER4A LTR ERV1 261 664 0 21 0 0 0 chr6 61116042 61116063 -128163491 + AT_rich Low_complexity Low_complexity 1 21 0 2038 149 49 3 chr6 61116247 61116595 -128162959 + THE1B LTR MaLR 1 364 0 921 223 29 86 chr6 61116759 61117185 -128162369 + LTR9B LTR ERV1 40 441 -185 207 341 88 11 chr6 61117238 61117329 -128162225 - L2 LINE L2 -26 3246 3149 379 314 76 16 chr6 61117473 61117658 -128161896 - MIR SINE MIR -48 214 19 28 79 0 0 chr6 61117817 61117880 -128161674 + AT_rich Low_complexity Low_complexity 1 63 0 1810 139 36 7 chr6 61117880 61118160 -128161394 - AluSx SINE Alu -24 288 1 1688 229 82 75 chr6 61118180 61118751 -128160803 - MLT1E1 LTR MaLR -79 575 1 417 102 17 0 chr6 61119193 61119252 -128160302 - U7 snRNA snRNA -2 61 2 24 32 0 0 chr6 61121173 61121204 -128158350 + AT_rich Low_complexity Low_complexity 1 31 0 2444 80 0 3 chr6 61121480 61121791 -128157763 + AluY SINE Alu 1 310 -1 1957 113 36 0 chr6 61122815 61123125 -128156429 - AluSx SINE Alu 0 320 1 1748 225 84 6 chr6 61123301 61123907 -128155647 + Cheshire DNA MER1_type 139 984 -1436 365 272 12 0 chr6 61123907 61123988 -128155566 - MER2 DNA MER2_type 0 345 264 2196 121 3 3 chr6 61123997 61124310 -128155244 + AluSq SINE Alu 1 313 0 12413 218 22 33 chr6 61124667 61130107 -128149447 + L1PB4 LINE L1 1408 6843 -16 482 83 14 0 chr6 61130243 61130315 -128149239 - MER2 DNA MER2_type -152 193 121 1492 190 42 10 chr6 61130328 61130617 -128148937 + AluJo SINE Alu 13 310 -2 669 233 8 0 chr6 61130630 61130763 -128148791 - MER2 DNA MER2_type -210 135 2 5493 198 58 23 chr6 61130764 61132130 -128147424 + Cheshire DNA MER1_type 983 2396 -24 743 125 75 0 chr6 61132216 61132361 -128147193 + AluSg/x SINE Alu 154 307 0 1975 182 56 34 chr6 61133351 61133399 -128146155 - MLT2A2 LTR ERVL -2 552 507 2094 128 51 25 chr6 61133399 61133752 -128145802 + THE1B LTR MaLR 3 364 0 1975 182 56 34 chr6 61133752 61134248 -128145306 - MLT2A2 LTR ERVL -47 507 1 987 299 105 51 chr6 61135004 61135750 -128143804 - ERVL LTR ERVL -2882 2772 1987 441 0 0 0 chr6 61135889 61135938 -128143616 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 275 380 35 0 chr6 61137354 61137525 -128142029 - LTR67 LTR ERVL -27 530 354 22 35 0 0 chr6 61139284 61139313 -128140241 + AT_rich Low_complexity Low_complexity 1 29 0 228 160 140 0 chr6 61139798 61139848 -128139706 + MLT1J LTR MaLR 88 144 -367 1682 152 48 45 chr6 61139848 61140222 -128139332 - THE1C LTR MaLR 0 375 1 8023 128 147 13 chr6 61140222 61141613 -128137941 - THE1C-int LTR MaLR 0 1580 4 1733 166 32 42 chr6 61141616 61141995 -128137559 - THE1C LTR MaLR 0 375 1 366 344 84 26 chr6 61142083 61142310 -128137244 + MLT1J LTR MaLR 222 461 -50 2287 91 98 33 chr6 61142578 61142816 -128136738 + L1PA13 LINE L1 5741 6017 -146 2392 84 0 7 chr6 61142816 61143124 -128136430 + AluY SINE Alu 1 306 -5 2287 91 98 33 chr6 61143124 61143282 -128136272 + L1PA13 LINE L1 6017 6163 0 2017 133 14 0 chr6 61144070 61144356 -128135198 - AluSx SINE Alu -22 290 1 617 361 28 14 chr6 61144383 61144674 -128134880 - LTR16A LTR ERVL -142 308 14 503 304 37 21 chr6 61145007 61145198 -128134356 - ERVL LTR ERVL -2153 3611 3418 241 266 63 0 chr6 61145584 61145663 -128133891 - MIR SINE MIR -10 252 169 2206 110 0 7 chr6 61146382 61146692 -128132862 - AluSg SINE Alu -2 308 1 270 318 37 28 chr6 61147334 61147551 -128132003 + L1ME4a LINE L1 5567 5785 -336 210 245 0 47 chr6 61147556 61147662 -128131892 + (TA)n Simple_repeat Simple_repeat 1 101 0 251 214 46 19 chr6 61147678 61147785 -128131769 + L1ME4a LINE L1 5811 5914 -207 27 62 0 0 chr6 61147891 61147939 -128131615 + AT_rich Low_complexity Low_complexity 1 48 0 460 316 92 77 chr6 61148088 61148282 -128131272 + L2 LINE L2 2916 3106 -207 2907 79 61 23 chr6 61148282 61148710 -128130844 + MLT2A1 LTR ERVL 1 444 0 460 316 92 77 chr6 61148710 61148907 -128130647 + L2 LINE L2 3106 3313 0 221 81 0 27 chr6 61149119 61149156 -128130398 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 22 0 0 0 chr6 61150696 61150718 -128128836 + AT_rich Low_complexity Low_complexity 1 22 0 2845 89 54 0 chr6 61151205 61151611 -128127943 + L1PA11 LINE L1 5747 6174 0 247 321 67 8 chr6 61152220 61152354 -128127200 + MER103 DNA DNA 21 162 -4 2295 116 0 0 chr6 61152539 61152849 -128126705 + AluSx SINE Alu 1 310 -2 600 242 146 29 chr6 61152929 61153314 -128126240 + L1ME1 LINE L1 3563 3992 -2154 1665 177 7 16 chr6 61153319 61153629 -128125925 - AluSx SINE Alu -5 307 1 522 217 0 93 chr6 61153657 61153818 -128125736 + FRAM SINE Alu 1 146 -30 492 213 47 47 chr6 61153837 61154006 -128125548 + L1ME1 LINE L1 4007 4175 -1971 2354 246 84 56 chr6 61154017 61154085 -128125469 + L1ME1 LINE L1 4596 4661 -1505 2007 143 0 10 chr6 61154085 61154385 -128125169 + AluSx SINE Alu 1 297 -15 2354 246 84 56 chr6 61154385 61154998 -128124556 + L1ME1 LINE L1 4661 5255 -911 189 0 0 0 chr6 61154998 61155019 -128124535 + (TA)n Simple_repeat Simple_repeat 1 21 0 2354 246 84 56 chr6 61155019 61155318 -128124236 + L1ME1 LINE L1 5255 5544 -622 190 0 0 0 chr6 61155324 61155345 -128124209 + (TTTTA)n Simple_repeat Simple_repeat 1 60 0 6072 102 12 1 chr6 61155345 61155964 -128123590 - L1PA10 LINE L1 -20 6148 5537 2434 71 0 7 chr6 61155964 61156274 -128123280 - AluY SINE Alu -3 308 1 6072 102 12 1 chr6 61156274 61157331 -128122223 - L1ME1 LINE L1 -631 5537 4467 2354 246 84 56 chr6 61157331 61157873 -128121681 + L1ME1 LINE L1 5544 6165 -1 2113 157 28 23 chr6 61158705 61159093 -128120461 + MLT1B LTR MaLR 1 390 0 183 129 0 0 chr6 61159715 61159746 -128119808 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 316 303 37 0 chr6 61160546 61160655 -128118899 - MIR SINE MIR -78 184 72 42726 34 22 1 chr6 61161272 61167298 -128112256 + L1PA3 LINE L1 1 6155 0 218 245 20 0 chr6 61167716 61167765 -128111789 + L2 LINE L2 3137 3186 -86 393 311 85 6 chr6 61167818 61167982 -128111572 - MIR SINE MIR -58 204 28 187 306 56 14 chr6 61168204 61168276 -128111278 + L3 LINE CR1 1482 1556 -21 2358 96 0 13 chr6 61168836 61169149 -128110405 - AluSc SINE Alu 0 309 1 2456 122 11 3 chr6 61169411 61169772 -128109782 + THE1B LTR MaLR 1 364 0 2031 148 11 42 chr6 61169919 61170278 -128109276 + MER7A DNA MER2_type 1 346 0 22 56 0 0 chr6 61170493 61170529 -128109025 + AT_rich Low_complexity Low_complexity 1 36 0 2707 96 19 28 chr6 61170826 61171253 -128108301 + L1PB1 LINE L1 5728 6150 -1 203 375 0 0 chr6 61171361 61171433 -128108121 - L2 LINE L2 -557 2757 2686 2126 110 4 0 chr6 61172128 61172439 -128107115 - AluSq SINE Alu 0 312 1 336 310 95 6 chr6 61173553 61173711 -128105843 - MIR SINE MIR -26 236 65 370 296 155 22 chr6 61176114 61176340 -128103214 + MIR SINE MIR 1 256 -6 2152 155 157 7 chr6 61176375 61176826 -128102728 + L1MC3 LINE L1 7260 7778 -7 1799 141 44 3 chr6 61176829 61177148 -128102406 + L1PA15 LINE L1 5830 6161 -4 225 314 220 26 chr6 61177438 61177629 -128101925 - MIR SINE MIR -33 229 2 216 341 12 12 chr6 61177819 61177904 -128101650 - MIR SINE MIR -3 259 175 2198 154 8 3 chr6 61177982 61178351 -128101203 - L1PB4 LINE L1 -2 6154 5784 32 0 0 0 chr6 61178351 61178383 -128101171 + AT_rich Low_complexity Low_complexity 1 32 0 4351 174 30 16 chr6 61178470 61179804 -128099750 - L1PB4 LINE L1 -377 5779 4429 802 221 58 13 chr6 61180005 61180231 -128099323 + L1MA9 LINE L1 6047 6282 -30 2172 226 91 11 chr6 61181913 61182616 -128096938 + L1M4 LINE L1 3735 4493 -1653 247 274 103 26 chr6 61182810 61182927 -128096627 + LTR67 LTR ERVL 426 551 -6 214 211 53 140 chr6 61183060 61183174 -128096380 - MIR SINE MIR -61 201 98 3849 192 33 9 chr6 61183422 61184082 -128095472 - L1MB1 LINE L1 -44 6145 5460 450 0 0 0 chr6 61184082 61184132 -128095422 + (TA)n Simple_repeat Simple_repeat 1 50 0 3849 192 33 9 chr6 61184132 61184284 -128095270 - L1MB1 LINE L1 -729 5460 5313 27 0 0 0 chr6 61184321 61184348 -128095206 + AT_rich Low_complexity Low_complexity 1 27 0 317 155 0 0 chr6 61184376 61184434 -128095120 - L1MB1 LINE L1 -869 5277 5220 900 158 7 7 chr6 61234822 61234974 -128044580 - AluY SINE Alu -159 152 1 189 0 0 0 chr6 61235425 61235446 -128044108 + (CAA)n Simple_repeat Simple_repeat 1 21 0 906 141 21 0 chr6 61235460 61235602 -128043952 + FRAM SINE Alu 12 156 -20 255 256 11 11 chr6 61235934 61236024 -128043530 + (TA)n Simple_repeat Simple_repeat 2 91 0 1795 136 26 39 chr6 61236448 61236757 -128042797 - AluSc SINE Alu -4 305 1 1027 173 0 0 chr6 61236825 61236987 -128042567 - FRAM SINE Alu -16 160 1 1909 133 0 42 chr6 61237386 61237671 -128041883 + AluSx SINE Alu 1 273 -39 326 78 0 20 chr6 61237673 61237724 -128041830 + (GGGA)n Simple_repeat Simple_repeat 3 52 0 265 50 0 0 chr6 61237824 61237864 -128041690 + AluSx SINE Alu 257 296 -4 440 209 37 98 chr6 61239019 61239182 -128040372 + L1MC5 LINE L1 7360 7512 -449 1466 183 81 14 chr6 61239639 61239758 -128039796 + AluJo SINE Alu 1 111 -201 180 0 0 0 chr6 61239758 61239778 -128039776 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1466 183 81 14 chr6 61239778 61239943 -128039611 + AluJo SINE Alu 111 304 -8 180 77 0 0 chr6 61240810 61240836 -128038718 + (TG)n Simple_repeat Simple_repeat 2 27 0 450 0 0 0 chr6 61241434 61241484 -128038070 + (TA)n Simple_repeat Simple_repeat 2 51 0 2290 78 0 0 chr6 61241643 61241924 -128037630 + AluY SINE Alu 1 281 -30 323 225 72 36 chr6 61241989 61242100 -128037454 - MIR SINE MIR -1 261 147 707 239 71 46 chr6 61242138 61242377 -128037177 + MER89 LTR ERV1 178 422 -137 2027 213 40 8 chr6 61242377 61242447 -128037107 - MER67D LTR ERV1 0 514 448 1728 167 9 38 chr6 61242447 61242765 -128036789 + AluSx SINE Alu 1 309 -3 2027 213 40 8 chr6 61242765 61242977 -128036577 - MER67D LTR ERV1 -66 448 244 207 0 0 0 chr6 61242977 61243000 -128036554 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2027 213 40 8 chr6 61243000 61243214 -128036340 - MER67D LTR ERV1 -270 244 1 585 213 0 0 chr6 61243214 61243333 -128036221 + MER89 LTR ERV1 419 537 -22 24 0 0 0 chr6 61243369 61243393 -128036161 + AT_rich Low_complexity Low_complexity 1 24 0 2222 98 7 0 chr6 61243393 61243678 -128035876 - AluSp SINE Alu -26 287 1 434 273 188 13 chr6 61244438 61244592 -128034962 - MER5A DNA MER1_type 0 189 9 570 188 0 0 chr6 61244744 61244840 -128034714 + AluJ/FLAM SINE Alu 1 96 -216 316 248 92 18 chr6 61245083 61245192 -128034362 - MIR SINE MIR -4 258 142 590 147 0 0 chr6 61245424 61245526 -128034028 - L1MA7 LINE L1 -4 6287 6186 373 205 205 32 chr6 61245725 61245915 -128033639 - L1MC5 LINE L1 -34 7927 7705 1283 196 20 0 chr6 61245953 61246203 -128033351 - MER68 LTR ERV1 0 562 308 504 176 0 0 chr6 61246204 61246289 -128033265 - AluJ/FLAM SINE Alu -227 85 1 1174 198 72 14 chr6 61246289 61246582 -128032972 - MER68 LTR ERV1 -252 310 1 515 205 90 29 chr6 61246625 61246869 -128032685 - L1MC5 LINE L1 -337 7624 7366 185 254 73 0 chr6 61247561 61247616 -128031938 + L3 LINE CR1 1181 1239 -338 2044 108 57 3 chr6 61247634 61247930 -128031624 + AluSx SINE Alu 1 312 0 183 42 0 0 chr6 61248136 61248160 -128031394 + (TTG)n Simple_repeat Simple_repeat 2 25 0 418 214 194 83 chr6 61248169 61248214 -128031340 - MER57A LTR ERV1 0 403 364 1817 146 19 13 chr6 61248214 61248522 -128031032 + AluSx SINE Alu 3 312 0 418 214 194 83 chr6 61248522 61248836 -128030718 - MER57A LTR ERV1 -39 364 4 2223 97 3 0 chr6 61249065 61249355 -128030199 + AluSg SINE Alu 1 291 -19 478 227 176 0 chr6 61250422 61250541 -128029013 - MER5A DNA MER1_type -1 188 49 210 329 25 0 chr6 61250799 61250878 -128028676 - MIR3 SINE MIR -43 165 85 22 80 0 0 chr6 61250960 61251010 -128028544 + AT_rich Low_complexity Low_complexity 1 50 0 220 338 167 29 chr6 61251570 61251780 -128027774 - MIR SINE MIR -17 245 7 1990 150 0 0 chr6 61252072 61252365 -128027189 + AluSx SINE Alu 1 293 -19 898 246 76 98 chr6 61252472 61253196 -128026358 - L2 LINE L2 -674 2640 1933 768 201 78 15 chr6 61253245 61253449 -128026105 + L1ME3A LINE L1 5879 6095 -75 272 217 0 0 chr6 61253612 61253672 -128025882 + L1ME3A LINE L1 6100 6159 -11 446 314 101 5 chr6 61253712 61253919 -128025635 + L1ME4a LINE L1 5601 5827 -294 290 262 12 0 chr6 61255287 61255371 -128024183 - L1ME LINE L1 -438 5683 5599 2306 99 0 43 chr6 61255455 61255808 -128023746 - AluSc SINE Alu 0 339 1 26 30 0 0 chr6 61256190 61256223 -128023331 + AT_rich Low_complexity Low_complexity 1 33 0 655 237 25 0 chr6 61256532 61256730 -128022824 - L1PA16 LINE L1 -5 6161 5959 2209 88 37 0 chr6 61256735 61257029 -128022525 - AluSg SINE Alu -5 305 1 594 313 50 43 chr6 61257579 61257975 -128021579 + L1MD3 LINE L1 4630 5031 -1115 1875 158 3 32 chr6 61257975 61258286 -128021268 + AluJb SINE Alu 11 312 0 594 313 50 43 chr6 61258286 61258305 -128021249 + L1MD3 LINE L1 5031 5048 -1098 1075 246 72 36 chr6 61258592 61259095 -128020459 + L1MD3 LINE L1 5283 5803 -2005 973 131 0 14 chr6 61259331 61259476 -128020078 + FLAM_C SINE Alu 1 143 0 348 286 68 50 chr6 61259486 61259671 -128019883 + L1MD3 LINE L1 6666 6873 -1169 2209 128 0 3 chr6 61259671 61259984 -128019570 + AluSx SINE Alu 1 312 0 348 286 68 50 chr6 61259984 61260138 -128019416 + L1MD3 LINE L1 6873 7023 -1019 1660 185 3 17 chr6 61260355 61260657 -128018897 - AluJb SINE Alu -14 298 1 1282 269 102 14 chr6 61260661 61261385 -128018169 + L1MC4 LINE L1 7104 7891 -151 24 53 0 0 chr6 61261448 61261486 -128018068 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr6 61261723 61261760 -128017794 + AT_rich Low_complexity Low_complexity 1 37 0 731 165 8 8 chr6 61261964 61262085 -128017469 + FLAM_C SINE Alu 1 121 -22 203 0 0 36 chr6 61262087 61262115 -128017439 + (TAA)n Simple_repeat Simple_repeat 2 28 0 223 207 0 207 chr6 61262136 61262223 -128017331 - L2 LINE L2 -38 3275 3207 662 261 97 0 chr6 61262244 61262420 -128017134 - MIR SINE MIR -36 226 34 1668 194 83 6 chr6 61262474 61262834 -128016720 + MSTD LTR MaLR 1 388 -8 242 28 0 28 chr6 61262866 61262902 -128016652 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1285 219 45 0 chr6 61263055 61263324 -128016230 + AluJo SINE Alu 1 281 -31 21 57 0 0 chr6 61263324 61263359 -128016195 + AT_rich Low_complexity Low_complexity 1 35 0 2324 109 3 0 chr6 61263361 61263665 -128015889 + AluSc SINE Alu 1 305 -4 24 0 0 0 chr6 61264132 61264156 -128015398 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr6 61265030 61265054 -128014500 + AT_rich Low_complexity Low_complexity 1 24 0 2099 127 0 0 chr6 61265584 61265906 -128013648 + AluSx SINE Alu 1 322 0 357 300 111 57 chr6 61266141 61266421 -128013133 - MLT1I LTR MaLR -17 392 98 329 338 22 7 chr6 61266564 61266703 -128012851 - L2 LINE L2 -1035 2279 2139 1878 162 10 0 chr6 61267017 61267313 -128012241 + AluJb SINE Alu 5 303 -9 638 199 38 54 chr6 61267504 61267812 -128011742 - MLT1B LTR MaLR -11 379 2 451 268 22 39 chr6 61268027 61268206 -128011348 + MER5B DNA MER1_type 3 178 0 1928 158 0 19 chr6 61268403 61268714 -128010840 - AluSx SINE Alu -7 305 1 259 305 51 42 chr6 61268719 61268837 -128010717 - MER5B DNA MER1_type -1 177 59 930 295 29 41 chr6 61269444 61269858 -128009696 - MER90 LTR ERV1 -17 558 150 288 328 44 38 chr6 61270817 61270973 -128008581 + MER5B DNA MER1_type 2 177 -12 2077 120 3 3 chr6 61271043 61271357 -128008197 + AluSq SINE Alu 1 314 0 553 280 77 14 chr6 61271506 61271713 -128007841 + MIR SINE MIR 30 249 -13 518 268 0 7 chr6 61271763 61271901 -128007653 - FLAM_A SINE Alu -2 140 4 1763 179 10 13 chr6 61272114 61272427 -128007127 - AluSx SINE Alu 0 312 1 470 106 14 183 chr6 61272782 61272924 -128006630 + FLAM_C SINE Alu 1 118 -15 24 0 0 0 chr6 61275016 61275040 -128004514 + AT_rich Low_complexity Low_complexity 1 24 0 254 250 42 0 chr6 61275540 61275612 -128003942 - MIR SINE MIR -117 145 71 2213 112 6 10 chr6 61275730 61276044 -128003510 - AluSp SINE Alu 0 313 1 757 218 64 36 chr6 61276456 61276676 -128002878 + MIR SINE MIR 32 257 -5 2286 74 0 7 chr6 61277198 61277496 -128002058 - AluY SINE Alu -15 296 1 272 173 0 0 chr6 61278276 61278328 -128001226 - FLAM_A SINE Alu 0 133 82 1378 64 6 0 chr6 61278328 61278501 -128001053 - AluY SINE Alu -17 294 121 1028 251 92 83 chr6 61278601 61278709 -128000845 + MER97a DNA MER1_type? 23 129 -765 2068 90 0 4 chr6 61278709 61278977 -128000577 - AluSq SINE Alu -46 267 1 1028 251 92 83 chr6 61278977 61279276 -128000278 + MER97a DNA MER1_type? 129 424 -470 2167 118 0 3 chr6 61279276 61279573 -127999981 - AluSx SINE Alu -16 296 1 1028 251 92 83 chr6 61279573 61279873 -127999681 + MER97a DNA MER1_type? 424 737 -157 953 191 0 29 chr6 61279877 61280050 -127999504 - AluJo SINE Alu -30 282 115 369 258 155 32 chr6 61280056 61280113 -127999441 + MER97b DNA MER1_type? 771 820 -233 2575 127 46 5 chr6 61280113 61280524 -127999030 + MSTA LTR MaLR 1 428 0 369 258 155 32 chr6 61280524 61280718 -127998836 + MER97b DNA MER1_type? 820 1053 0 2001 154 0 3 chr6 61280779 61281085 -127998469 - AluSx SINE Alu -7 305 1 321 87 12 86 chr6 61281087 61281159 -127998395 - AluSc SINE Alu -168 131 66 3324 105 18 10 chr6 61281208 61281704 -127997850 + Charlie3 DNA MER1_type 1 500 -2210 3024 104 17 15 chr6 61281698 61282160 -127997394 + Charlie3 DNA MER1_type 2242 2704 -6 * 528 118 20 39 chr6 61282350 61282452 -127997102 + L1MA1 LINE L1 6203 6302 0 1194 176 137 143 chr6 61282502 61283019 -127996535 + MER67D LTR ERV1 1 514 0 1829 146 0 63 chr6 61283252 61283568 -127995986 - AluSx SINE Alu -16 296 1 203 302 56 56 chr6 61284604 61284730 -127994824 - L2 LINE L2 -178 3094 2969 1636 116 5 5 chr6 61285377 61285601 -127993953 + AluSx SINE Alu 1 224 -88 387 0 0 0 chr6 61285926 61285969 -127993585 + (TG)n Simple_repeat Simple_repeat 2 44 0 356 370 61 9 chr6 61286979 61287209 -127992345 + MIR SINE MIR 20 261 -1 23 0 0 0 chr6 61287371 61287394 -127992160 + AT_rich Low_complexity Low_complexity 1 23 0 1444 151 4 62 chr6 61287498 61287757 -127991797 - AluSx SINE Alu -68 244 1 694 211 0 15 chr6 61287890 61288023 -127991531 + FLAM_A SINE Alu 1 131 -2 2150 129 6 6 chr6 61288141 61288452 -127991102 + AluSx SINE Alu 1 311 -1 596 26 26 0 chr6 61288510 61288587 -127990967 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 1830 177 0 7 chr6 61288587 61288869 -127990685 - AluJo SINE Alu -32 280 1 247 169 46 0 chr6 61289642 61289707 -127989847 + GA-rich Low_complexity Low_complexity 1 68 0 22 0 0 0 chr6 61290767 61290789 -127988765 + AT_rich Low_complexity Low_complexity 1 22 0 237 32 0 0 chr6 61291383 61291414 -127988140 + HSMAR1 DNA Mariner 1257 1287 0 874 113 84 0 chr6 61292255 61292397 -127987157 + MER39B LTR ERV1 1 154 -499 1424 136 180 0 chr6 61292449 61292677 -127986877 - AluSx SINE Alu -43 269 1 2254 130 93 0 chr6 61292717 61293148 -127986406 + MER39B LTR ERV1 183 653 0 226 111 0 37 chr6 61293968 61294022 -127985532 + (TG)n Simple_repeat Simple_repeat 1 52 0 1946 163 3 3 chr6 61294323 61294623 -127984931 + AluSp SINE Alu 5 304 -9 2411 105 18 34 chr6 61295085 61295466 -127984088 + THE1C LTR MaLR 1 375 0 1038 173 74 123 chr6 61295512 61295974 -127983580 + L1MC4 LINE L1 7592 8030 -12 3370 175 38 12 chr6 61296269 61296959 -127982595 + MER67C LTR ERV1 3 710 0 229 296 23 23 chr6 61296959 61297047 -127982507 - L2 LINE L2 -7 3265 3178 205 284 37 62 chr6 61297146 61297227 -127982327 + L2 LINE L2 3235 3313 0 2002 269 48 33 chr6 61297944 61298175 -127981379 - L1MEc LINE L1 -5533 863 637 1824 179 0 7 chr6 61298175 61298471 -127981083 - AluJb SINE Alu -18 294 1 2002 269 48 33 chr6 61298471 61299054 -127980500 - L1MEc LINE L1 -5759 637 37 216 67 0 0 chr6 61299436 61299466 -127980088 + (TG)n Simple_repeat Simple_repeat 1 30 0 485 314 119 5 chr6 61299640 61299834 -127979720 - MIR SINE MIR -44 218 3 1722 212 10 20 chr6 61300197 61300588 -127978966 - MLT1B LTR MaLR -3 387 1 254 359 26 26 chr6 61301023 61301140 -127978414 + MIR SINE MIR 8 124 -138 1907 146 0 0 chr6 61301398 61301672 -127977882 - AluSx SINE Alu -34 278 5 1744 196 6 3 chr6 61302019 61302340 -127977214 + MER21B LTR ERV1 1 322 -541 1273 178 36 64 chr6 61302353 61302634 -127976920 - AluJo SINE Alu -39 273 1 2446 172 62 33 chr6 61302647 61303165 -127976389 + MER21B LTR ERV1 330 862 -1 1577 186 99 26 chr6 61303252 61303710 -127975844 - LTR10A LTR ERV1 -61 548 1 244 255 0 78 chr6 61304082 61304184 -127975370 + GA-rich Low_complexity Low_complexity 3 96 0 678 199 19 147 chr6 61304188 61304399 -127975155 + AluJo SINE Alu 1 184 -128 2566 124 64 156 chr6 61304524 61304898 -127974656 + MER39B LTR ERV1 1 279 -374 2218 156 92 0 chr6 61304898 61305288 -127974266 + MSTB LTR MaLR 1 426 0 2566 124 64 156 chr6 61305288 61305632 -127973922 + MER39B LTR ERV1 279 653 0 26 30 0 0 chr6 61305801 61305834 -127973720 + AT_rich Low_complexity Low_complexity 1 33 0 2190 181 74 55 chr6 61305872 61306496 -127973058 - MER92B LTR ERV1 0 636 1 1941 122 45 51 chr6 61306969 61307281 -127972273 - AluSg SINE Alu 0 310 1 207 0 0 0 chr6 61307321 61307344 -127972210 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 457 254 7 14 chr6 61308450 61308588 -127970966 + L1MC4 LINE L1 6450 6586 -1456 1592 187 52 7 chr6 61308609 61308898 -127970656 - AluJo SINE Alu 0 312 11 1155 243 285 7 chr6 61309515 61309703 -127969851 + L1MC4 LINE L1 6553 6688 -1354 2188 113 7 3 chr6 61309703 61310036 -127969518 + AluSq SINE Alu 1 313 0 1155 243 285 7 chr6 61310036 61310716 -127968838 + L1MC4 LINE L1 6688 7729 -313 320 320 86 0 chr6 61310767 61310895 -127968659 - MIR SINE MIR -78 184 46 255 40 40 20 chr6 61310942 61310992 -127968562 + (TA)n Simple_repeat Simple_repeat 2 52 0 2250 106 0 0 chr6 61310992 61311285 -127968269 - AluSx SINE Alu -19 293 1 213 108 0 0 chr6 61312058 61312095 -127967459 + (TA)n Simple_repeat Simple_repeat 2 38 0 278 116 0 106 chr6 61312189 61312388 -127967166 + (TA)n Simple_repeat Simple_repeat 2 179 0 370 127 0 51 chr6 61312417 61312575 -127966979 + (TA)n Simple_repeat Simple_repeat 2 151 0 183 42 0 0 chr6 61313859 61313883 -127965671 + (TG)n Simple_repeat Simple_repeat 1 24 0 38342 65 6 0 chr6 61314682 61319886 -127959668 + L1P LINE L1 1 5233 -913 298 179 0 30 chr6 61320655 61320722 -127958832 - MER103 DNA DNA -89 77 13 5469 110 44 2 chr6 61321555 61322451 -127957103 + L1PA15 LINE L1 5221 6150 -15 1432 104 64 0 chr6 61323652 61323872 -127955682 - LTR12 LTR ERV1 -133 581 348 313 188 0 0 chr6 61323873 61323942 -127955612 - LTR30 LTR ERV1 -110 612 544 6880 123 54 21 chr6 61323942 61325275 -127954279 - pTR5 LTR ERV1 -413 2025 171 312 224 31 20 chr6 61325277 61325375 -127954179 - LTR30 LTR ERV1 -80 642 544 4367 127 42 28 chr6 61325375 61326328 -127953226 - pTR5 LTR ERV1 -413 2025 743 376 319 105 22 chr6 61326484 61326713 -127952841 - MIR SINE MIR -10 252 5 740 265 126 33 chr6 61328323 61328712 -127950842 + MLT1D LTR MaLR 81 505 0 1112 193 117 41 chr6 61328750 61329212 -127950342 + L1MC5 LINE L1 7333 7829 -132 2309 107 0 19 chr6 61329212 61329531 -127950023 + AluSq SINE Alu 1 313 0 184 256 0 0 chr6 61329531 61329570 -127949984 - L2 LINE L2 -88 3225 3187 434 238 73 40 chr6 61329621 61329772 -127949782 - MER58C DNA MER1_type -22 193 38 14097 134 12 19 chr6 61331059 61333471 -127946083 - Tigger1 DNA MER2_type 0 2418 23 288 288 140 8 chr6 61333554 61333797 -127945757 - L1MC4a LINE L1 -1903 5905 5631 2272 116 3 0 chr6 61333981 61334292 -127945262 + AluSp SINE Alu 1 312 -1 312 244 69 23 chr6 61334320 61334451 -127945103 + L1MC5 LINE L1 7781 7917 -44 458 207 86 0 chr6 61335499 61335615 -127943939 - MER90 LTR ERV1 0 614 489 628 145 28 0 chr6 61336130 61336263 -127943291 + MSTB1 LTR MaLR 1 128 -298 678 106 53 9 chr6 61336263 61336376 -127943178 + MSTB1 LTR MaLR 313 430 -2 5892 186 147 13 chr6 61336376 61337814 -127941740 + MSTB1-int LTR MaLR 3 1633 -18 1992 165 64 10 chr6 61337823 61338211 -127941343 + MSTB1 LTR MaLR 24 432 0 2135 103 33 0 chr6 61338232 61338532 -127941022 + AluSx SINE Alu 2 311 -1 2399 97 7 0 chr6 61339036 61339345 -127940209 + AluSx SINE Alu 1 311 -1 368 275 110 72 chr6 61339374 61339707 -127939847 + L1ME LINE L1 5256 5601 -520 541 15 29 0 chr6 61340374 61340442 -127939112 - L1PA5 LINE L1 -5 6149 6080 719 215 18 103 chr6 61340570 61340793 -127938761 - MIR SINE MIR 0 262 59 1056 113 0 38 chr6 61343465 61343625 -127935929 + AluSx SINE Alu 1 154 -158 6673 55 58 0 chr6 61343625 61344473 -127935081 - MER11D LTR ERVK 0 897 1 37217 37 4 7 chr6 61344473 61349186 -127930368 - HERVK11D LTR ERVK 0 7752 3054 6442 65 6 0 chr6 61349174 61350029 -127929525 - HERVK11D LTR ERVK -6892 860 1 * 6830 59 29 16 chr6 61350029 61350402 -127929152 - MER11D LTR ERVK 0 897 531 1993 66 0 0 chr6 61350402 61350680 -127928874 + AluY SINE Alu 41 318 0 6830 59 29 16 chr6 61350680 61351190 -127928364 - MER11D LTR ERVK -366 531 1 1020 111 15 0 chr6 61351190 61351363 -127928191 + AluSx SINE Alu 149 323 0 2537 213 68 7 chr6 61351535 61352150 -127927404 + MER82 DNA MER2_type 1 653 0 21 36 0 0 chr6 61352241 61352269 -127927285 + AT_rich Low_complexity Low_complexity 1 28 0 574 36 48 0 chr6 61352288 61352371 -127927183 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 2307 80 10 26 chr6 61352378 61352689 -127926865 - AluSp SINE Alu -7 306 1 454 266 37 37 chr6 61353858 61354046 -127925508 - L2 LINE L2 -5 3308 3121 26 0 0 0 chr6 61354421 61354447 -127925107 + AT_rich Low_complexity Low_complexity 1 26 0 234 317 29 29 chr6 61354509 61354613 -127924941 - MER5A DNA MER1_type -25 164 61 1377 77 0 0 chr6 61354632 61354814 -127924740 - L1PA8 LINE L1 -1 6171 5990 448 221 23 0 chr6 61356173 61356259 -127923295 + FLAM_A SINE Alu 1 88 -54 757 217 143 33 chr6 61356516 61356760 -127922794 - L1ME3A LINE L1 -155 6015 5745 1623 147 19 26 chr6 61356906 61357172 -127922382 + AluJb SINE Alu 11 274 -38 497 202 0 0 chr6 61357174 61357273 -127922281 + AluJo/FRAM SINE Alu 208 306 -6 216 116 116 47 chr6 61357664 61357707 -127921847 - L2 LINE L2 -4 3268 3223 7255 32 2 0 chr6 61358188 61359049 -127920505 + L1PA5 LINE L1 5284 6146 -8 24 0 0 0 chr6 61359049 61359073 -127920481 + AT_rich Low_complexity Low_complexity 1 24 0 30 59 0 0 chr6 61359107 61359158 -127920396 + AT_rich Low_complexity Low_complexity 1 51 0 296 244 12 23 chr6 61359235 61359321 -127920233 + HAL1 LINE L1 1385 1469 -1038 21 36 0 0 chr6 61359550 61359578 -127919976 + AT_rich Low_complexity Low_complexity 1 28 0 251 98 39 0 chr6 61360790 61360841 -127918713 + CT-rich Low_complexity Low_complexity 4 56 0 564 159 131 0 chr6 61360994 61361101 -127918453 - FLAM_C SINE Alu -12 131 11 275 304 51 0 chr6 61361895 61361974 -127917580 - L2 LINE L2 -4 3309 3227 199 254 73 0 chr6 61362192 61362247 -127917307 + L2 LINE L2 3214 3272 0 21 0 0 0 chr6 61362373 61362394 -127917160 + AT_rich Low_complexity Low_complexity 1 21 0 314 277 108 15 chr6 61362627 61362766 -127916788 - L1ME LINE L1 -380 5741 5616 1969 120 14 0 chr6 61362766 61363050 -127916504 - AluSx SINE Alu -22 290 3 314 277 108 15 chr6 61363050 61363283 -127916271 - L1ME LINE L1 -505 5616 5335 2725 68 3 0 chr6 61364254 61364607 -127914947 + L1PA8 LINE L1 5802 6155 -17 594 272 12 35 chr6 61364825 61364998 -127914556 - MIR3 SINE MIR -19 189 21 804 244 22 50 chr6 61365621 61365940 -127913614 - L1MA9 LINE L1 -17 6295 5986 1996 126 0 29 chr6 61366116 61366426 -127913128 - AluSx SINE Alu -11 301 1 2286 107 0 0 chr6 61367447 61367745 -127911809 - AluSx SINE Alu -12 300 3 759 183 158 17 chr6 61368087 61368328 -127911226 - L1MD3 LINE L1 -2 7993 7719 2150 109 0 31 chr6 61368559 61368880 -127910674 - AluSq SINE Alu -2 311 1 2135 98 0 14 chr6 61369299 61369628 -127909926 - AluSg SINE Alu 0 325 1 700 188 26 0 chr6 61369766 61369903 -127909651 - FLAM_A SINE Alu 0 140 1 543 269 54 21 chr6 61370316 61370502 -127909052 + MIR SINE MIR 20 211 -51 1071 160 0 6 chr6 61370580 61370755 -127908799 + FRAM SINE Alu 1 173 -3 503 368 75 39 chr6 61371448 61371885 -127907669 + L2 LINE L2 2809 3261 -52 376 282 90 13 chr6 61372170 61372326 -127907228 + MIR SINE MIR 95 262 0 1848 211 3 6 chr6 61373182 61373523 -127906031 - MLT1A1 LTR MaLR 0 365 26 2500 131 3 5 chr6 61423536 61423918 -127855636 + MER4B LTR ERV1 230 610 0 7567 27 7 0 chr6 61424026 61425177 -127854377 + L1PA4 LINE L1 4999 6155 0 553 255 28 23 chr6 61425183 61425399 -127854155 - L1M4 LINE L1 -2079 4067 3851 180 152 0 0 chr6 61425399 61425432 -127854122 + (TA)n Simple_repeat Simple_repeat 1 33 0 2386 67 3 3 chr6 61425476 61425776 -127853778 - AluY SINE Alu -11 300 1 425 364 156 7 chr6 61425777 61426118 -127853436 + L2 LINE L2 2617 3005 -308 251 272 22 33 chr6 61426137 61426229 -127853325 + L2 LINE L2 2701 2791 -523 646 265 37 85 chr6 61426237 61426531 -127853023 + L2 LINE L2 3034 3313 0 344 429 21 0 chr6 61426686 61426919 -127852635 - L2 LINE L2 -349 2965 2728 2220 189 89 34 chr6 61427244 61427805 -127851749 - L1MD3 LINE L1 0 7995 7404 272 267 22 22 chr6 61427805 61427895 -127851659 - MLT1F1 LTR MaLR -442 125 36 314 315 105 27 chr6 61427938 61428233 -127851321 - L2 LINE L2 -1299 2015 1698 649 191 67 96 chr6 61429012 61429221 -127850333 - MER3 DNA MER1_type 0 209 7 197 319 82 115 chr6 61429324 61429801 -127849753 + L2 LINE L2 2292 2752 -562 1832 146 0 4 chr6 61430624 61430899 -127848655 + AluSx SINE Alu 1 274 -38 25 65 0 0 chr6 61431207 61431253 -127848301 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr6 61431551 61431574 -127847980 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr6 61434915 61434948 -127844606 + AT_rich Low_complexity Low_complexity 1 33 0 289 183 33 0 chr6 61436973 61437033 -127842521 + MER3 DNA MER1_type 148 209 0 259 182 18 0 chr6 61436988 61437043 -127842511 - MER3 DNA MER1_type -117 92 37 * 314 330 140 21 chr6 61437540 61437776 -127841778 + LTR33 LTR ERVL 258 521 0 307 298 39 34 chr6 61438003 61438208 -127841346 + L1ME LINE L1 5583 5788 -333 257 237 17 0 chr6 61439001 61439060 -127840494 + MLT1A2 LTR MaLR 31 90 -284 368 71 18 0 chr6 61440429 61440485 -127839069 + (TG)n Simple_repeat Simple_repeat 2 58 0 2387 69 23 0 chr6 61440685 61441037 -127838517 + AluY SINE Alu 1 359 0 462 298 96 40 chr6 61441282 61441687 -127837867 + L1M4 LINE L1 3726 4158 -1988 200 35 35 0 chr6 61441687 61441716 -127837838 + (TA)n Simple_repeat Simple_repeat 1 30 0 462 298 96 40 chr6 61441716 61441736 -127837818 + L1M4 LINE L1 4158 4175 -1971 44 0 0 0 chr6 61441743 61441787 -127837767 + AT_rich Low_complexity Low_complexity 1 44 0 480 330 168 32 chr6 61441794 61442219 -127837335 + L1M4 LINE L1 4178 4705 -1441 2188 127 0 0 chr6 61442219 61442527 -127837027 + AluSx SINE Alu 5 312 0 480 330 168 32 chr6 61442527 61442686 -127836868 + L1M4 LINE L1 4705 4841 -1305 32 0 0 0 chr6 61445616 61445648 -127833906 + AT_rich Low_complexity Low_complexity 1 32 0 1505 204 14 10 chr6 61445652 61445941 -127833613 - AluJo SINE Alu -17 295 6 201 251 49 110 chr6 61447089 61447252 -127832302 + MIR SINE MIR 108 260 -2 207 171 0 0 chr6 61447819 61447854 -127831700 + (CA)n Simple_repeat Simple_repeat 2 36 0 445 245 74 18 chr6 61447865 61448028 -127831526 - LTR16A1 LTR ERVL -2 455 284 355 291 45 15 chr6 61448111 61448245 -127831309 - LTR16A1 LTR ERVL -319 138 1 243 281 134 0 chr6 61448519 61448601 -127830953 + MIR SINE MIR 120 212 -50 3017 169 31 86 chr6 61448909 61448969 -127830585 - L1MA8 LINE L1 -3 6288 6226 790 198 123 5 chr6 61448969 61449156 -127830398 - MER6B DNA MER2_type -1 209 1 3017 169 31 86 chr6 61449156 61449890 -127829664 - L1MA8 LINE L1 -65 6226 5537 267 79 0 0 chr6 61450214 61450252 -127829302 - L1PA15 LINE L1 -7 6158 6121 * 16159 224 29 48 chr6 61450249 61451615 -127827939 - L1PA12 LINE L1 -1034 6550 5160 256 24 49 0 chr6 61451615 61451656 -127827898 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2101 114 0 0 chr6 61451661 61451932 -127827622 - AluSg SINE Alu -39 271 1 16159 224 29 48 chr6 61451932 61453853 -127825701 - L1PA12 LINE L1 -2428 5156 3201 2025 136 7 0 chr6 61453853 61454140 -127825414 + AluSc SINE Alu 1 289 -20 16159 224 29 48 chr6 61454140 61454670 -127824884 - L1PA12 LINE L1 -4383 3201 2663 667 120 0 0 chr6 61454670 61454762 -127824792 - AluS SINE Alu -218 94 3 16159 224 29 48 chr6 61454762 61454930 -127824624 - L1PA12 LINE L1 -4921 2663 2493 2094 147 0 0 chr6 61454930 61455229 -127824325 + AluSx SINE Alu 1 299 -13 16159 224 29 48 chr6 61455229 61455304 -127824250 - L1PA12 LINE L1 -5091 2493 2418 501 17 0 0 chr6 61455304 61455362 -127824192 + (TG)n Simple_repeat Simple_repeat 1 58 0 16159 224 29 48 chr6 61455362 61458128 -127821426 - L1PA12 LINE L1 -5166 2418 12 198 0 0 0 chr6 61458503 61458525 -127821029 + (TG)n Simple_repeat Simple_repeat 1 22 0 338 259 69 21 chr6 61460004 61460174 -127819380 - MLT1G LTR MaLR -45 550 280 669 219 34 14 chr6 61460186 61460332 -127819222 - MLT1G LTR MaLR -432 158 10 198 0 0 0 chr6 61460358 61460380 -127819174 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1942 234 157 2 chr6 61460894 61461373 -127818181 - MSTB1-int LTR MaLR -157 1494 942 1791 214 16 8 chr6 61461357 61461745 -127817809 - MSTB1-int LTR MaLR -1254 397 7 * 1822 192 74 17 chr6 61461749 61462156 -127817398 - MSTB1 LTR MaLR -2 430 1 1226 117 0 0 chr6 61462156 61462336 -127817218 - Tigger5 DNA MER2_type -84 2239 2060 1142 212 28 0 chr6 61462327 61462539 -127817015 - Tigger5 DNA MER2_type -2105 218 1 * 231 88 0 0 chr6 61462704 61462738 -127816816 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 326 308 9 47 chr6 61462738 61462845 -127816709 + MER5A DNA MER1_type 84 186 -3 351 0 0 0 chr6 61462963 61463002 -127816552 + (TA)n Simple_repeat Simple_repeat 1 39 0 32 43 0 0 chr6 61463432 61463478 -127816076 + AT_rich Low_complexity Low_complexity 1 46 0 7525 12 0 0 chr6 61465364 61466216 -127813338 - L1PA2 LINE L1 0 6155 5304 1542 22 0 0 chr6 61466215 61466395 -127813159 + L1P LINE L1 4908 5087 -1059 * 302 257 19 179 chr6 61466770 61467027 -127812527 + L2 LINE L2 2847 3062 -251 264 299 179 15 chr6 61467209 61467343 -127812211 - MIR SINE MIR -50 212 57 309 303 85 24 chr6 61467560 61467645 -127811909 + MIR SINE MIR 61 139 -123 511 101 13 0 chr6 61467645 61467724 -127811830 - MADE1 DNA Mariner 0 80 1 309 303 85 24 chr6 61467724 61467803 -127811751 + MIR SINE MIR 139 235 -27 203 189 0 0 chr6 61467824 61467861 -127811693 + (TTA)n Simple_repeat Simple_repeat 2 38 0 307 245 0 59 chr6 61468677 61468779 -127810775 - MER20B DNA MER1_type -1 782 687 300 27 0 0 chr6 61468920 61468957 -127810597 + (CA)n Simple_repeat Simple_repeat 2 38 0 22 80 0 0 chr6 61469414 61469464 -127810090 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr6 61469501 61469526 -127810028 + AT_rich Low_complexity Low_complexity 1 25 0 277 263 34 25 chr6 61469526 61469644 -127809910 - MER20B DNA MER1_type -146 637 519 213 235 0 29 chr6 61471016 61471084 -127808470 + T-rich Low_complexity Low_complexity 3 68 0 4239 30 0 0 chr6 61471085 61471585 -127807969 - L1PA4 LINE L1 -2 6153 5654 1867 158 19 65 chr6 61472085 61472516 -127807038 - LTR19A LTR ERV1 -75 411 1 1346 270 144 50 chr6 61472796 61473497 -127806057 + Charlie2b DNA MER1_type 203 969 -1813 292 258 125 8 chr6 61474046 61474166 -127805388 + MIR SINE MIR 129 262 0 755 226 122 85 chr6 61474921 61475297 -127804257 - MER57A LTR ERV1 0 403 14 571 266 196 50 chr6 61475988 61476412 -127803142 + LTR33 LTR ERVL 4 489 -32 228 214 204 51 chr6 61476415 61476513 -127803041 - MER81 DNA DNA 0 114 2 24 0 0 0 chr6 61476743 61476767 -127802787 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 61477004 61477033 -127802521 + AT_rich Low_complexity Low_complexity 1 29 0 277 269 75 0 chr6 61477516 61477583 -127801971 - L2 LINE L2 -32 3240 3169 412 312 64 6 chr6 61478370 61478527 -127801027 - MIR3 SINE MIR -7 201 36 559 265 54 0 chr6 61478565 61478712 -127800842 - MER5A DNA MER1_type -28 161 7 24 32 0 0 chr6 61478943 61478974 -127800580 + AT_rich Low_complexity Low_complexity 1 31 0 184 222 28 0 chr6 61480235 61480307 -127799247 + (CATA)n Simple_repeat Simple_repeat 2 75 0 3342 89 30 162 chr6 61480326 61481098 -127798456 - Tigger3(Golem) DNA MER2_type -83 2946 2277 556 250 0 0 chr6 61481089 61481197 -127798357 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 258 356 43 18 chr6 61481638 61481801 -127797753 + MLT1J1 LTR MaLR 70 236 -210 807 278 28 0 chr6 61482005 61482217 -127797337 - MER20B DNA MER1_type 0 219 2 2074 122 3 0 chr6 61482846 61483133 -127796421 + AluSx SINE Alu 14 301 -11 1836 174 0 3 chr6 61483356 61483650 -127795904 + AluSx SINE Alu 11 303 -9 192 77 0 0 chr6 61484169 61484195 -127795359 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 306 256 39 62 chr6 61484238 61484367 -127795187 + MLT1J LTR MaLR 3 128 -383 774 263 165 37 chr6 61487520 61487927 -127791627 + Charlie2b DNA MER1_type 224 682 -2100 406 226 75 50 chr6 61487992 61488191 -127791363 + Charlie2a DNA MER1_type 1467 1670 -1192 669 196 56 0 chr6 61488191 61488334 -127791220 + L1M4 LINE L1 5466 5616 -568 3020 262 48 44 chr6 61488355 61489468 -127790086 + L1MC3 LINE L1 5500 6620 -1165 2108 234 75 20 chr6 61489468 61490058 -127789496 - MLT1E2 LTR MaLR 0 626 5 3020 262 48 44 chr6 61490058 61490126 -127789428 + L1MC3 LINE L1 6620 6686 -1099 362 238 0 40 chr6 61490128 61490229 -127789325 + L1MC3 LINE L1 7032 7128 -657 225 0 0 0 chr6 61491343 61491368 -127788186 + (TTA)n Simple_repeat Simple_repeat 3 27 0 42547 36 22 1 chr6 61491368 61497377 -127782177 - L1PA3 LINE L1 -18 6137 2 24 0 0 0 chr6 61497877 61497901 -127781653 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr6 61498017 61498048 -127781506 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr6 61498305 61498332 -127781222 + AT_rich Low_complexity Low_complexity 1 27 0 242 238 7 28 chr6 61499066 61499209 -127780345 + A-rich Low_complexity Low_complexity 4 143 0 902 76 21 35 chr6 61500266 61500410 -127779144 + L1MA1 LINE L1 6087 6228 -74 979 71 0 0 chr6 61500410 61500534 -127779020 + L1MA1 LINE L1 6176 6302 0 21 0 0 0 chr6 61500700 61500721 -127778833 + AT_rich Low_complexity Low_complexity 1 21 0 712 72 65 51 chr6 61500904 61500973 -127778581 + THE1A-int LTR MaLR 1440 1507 -73 1885 134 11 3 chr6 61500973 61501281 -127778273 + AluSx SINE Alu 1 310 0 712 72 65 51 chr6 61501281 61501348 -127778206 + THE1A-int LTR MaLR 1507 1579 -1 2604 91 6 0 chr6 61501349 61501702 -127777852 + THE1A LTR MaLR 1 355 0 255 174 0 0 chr6 61501725 61501771 -127777783 + HsTC2 DNA Tc2 29 74 -1824 29 0 0 0 chr6 61502081 61502110 -127777444 + AT_rich Low_complexity Low_complexity 1 29 0 2131 129 3 3 chr6 61502187 61502513 -127777041 - L1PA15 LINE L1 -6 6159 5834 1390 165 28 0 chr6 61502513 61502762 -127776792 + L1PA15-16 LINE L1 2430 2685 -4164 2436 80 0 0 chr6 61502872 61503171 -127776383 + AluY SINE Alu 1 299 -12 2629 96 3 6 chr6 61503678 61504043 -127775511 + THE1B LTR MaLR 1 364 0 2031 123 0 0 chr6 61504109 61504410 -127775144 - Tigger1 DNA MER2_type -891 1527 1227 2348 86 0 0 chr6 61504410 61504702 -127774852 + AluSg SINE Alu 1 292 -18 9254 220 22 46 chr6 61504706 61505438 -127774116 + L1PA11 LINE L1 6 754 -5707 2133 119 7 0 chr6 61505438 61505733 -127773821 - AluSg SINE Alu -13 297 1 9254 220 22 46 chr6 61505733 61508258 -127771296 + L1PA11 LINE L1 754 3210 -3251 1176 142 0 16 chr6 61508242 61508425 -127771129 - THE1-int LTR MaLR -286 1294 1115 * 1073 153 23 6 chr6 61508425 61508601 -127770953 + THE1B LTR MaLR 185 363 -1 8143 148 7 2 chr6 61508601 61510777 -127768777 + L1PA11 LINE L1 4297 6488 -1 5075 135 23 31 chr6 61510777 61511056 -127768498 - Tigger1 DNA MER2_type -1185 1233 953 1093 179 22 9 chr6 61511056 61511280 -127768274 + L1PA16 LINE L1 5940 6166 0 5075 135 23 31 chr6 61511280 61511315 -127768239 - Tigger1 DNA MER2_type -1465 953 919 1848 193 0 0 chr6 61511315 61511616 -127767938 - AluSx SINE Alu -11 301 1 5075 135 23 31 chr6 61511616 61512544 -127767010 - Tigger1 DNA MER2_type -1499 919 1 1894 159 24 83 chr6 61512544 61513047 -127766507 + L1MB3 LINE L1 5682 6154 -29 1909 219 43 35 chr6 61513179 61513714 -127765840 - MER67A LTR ERV1 0 543 5 26 30 0 0 chr6 61515445 61515478 -127764076 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr6 61516025 61516051 -127763503 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr6 61516409 61516434 -127763120 + AT_rich Low_complexity Low_complexity 1 25 0 400 244 24 31 chr6 61517211 61517338 -127762216 - MIR SINE MIR -43 219 94 21 0 0 0 chr6 61518163 61518184 -127761370 + AT_rich Low_complexity Low_complexity 1 21 0 678 307 65 4 chr6 61518323 61518554 -127761000 + MIR SINE MIR 13 257 -5 465 294 96 0 chr6 61519104 61519250 -127760304 + MER5A DNA MER1_type 29 188 -1 312 272 130 0 chr6 61519269 61519361 -127760193 + MIR SINE MIR 34 137 -125 258 230 14 3 chr6 61520087 61520167 -127759387 + HsTC2 DNA Tc2 1818 1896 -2 237 33 0 0 chr6 61520229 61520259 -127759295 + L1PA8A LINE L1 5544 5573 -558 740 241 22 50 chr6 61520336 61520655 -127758899 - L1MA9 LINE L1 -17 6295 5986 2219 104 0 23 chr6 61520831 61521139 -127758415 - AluSx SINE Alu -11 301 1 2299 107 0 0 chr6 61522160 61522458 -127757096 - AluSx SINE Alu -12 300 3 690 183 158 17 chr6 61522800 61523041 -127756513 - L1MD3 LINE L1 -2 7993 7719 2200 109 0 28 chr6 61523272 61523592 -127755962 - AluSq SINE Alu -2 311 1 2141 98 0 14 chr6 61524011 61524340 -127755214 - AluSg SINE Alu 0 325 1 709 188 26 0 chr6 61524478 61524615 -127754939 - FLAM_A SINE Alu 0 140 1 540 269 54 21 chr6 61525028 61525214 -127754340 + MIR SINE MIR 20 211 -51 1084 161 0 6 chr6 61525292 61525466 -127754088 + FRAM SINE Alu 1 172 -4 489 371 75 39 chr6 61526159 61526596 -127752958 + L2 LINE L2 2809 3261 -52 368 282 90 13 chr6 61526881 61527037 -127752517 + MIR SINE MIR 95 262 0 1921 208 6 6 chr6 61527893 61528258 -127751296 - MLT1A1 LTR MaLR 0 365 1 274 312 43 11 chr6 61528558 61528651 -127750903 + MIR3 SINE MIR 13 108 -100 181 330 77 11 chr6 61528882 61528973 -127750581 + L2 LINE L2 3126 3222 -91 395 266 38 18 chr6 61529212 61529346 -127750208 + MIR SINE MIR 32 172 -66 2043 110 13 32 chr6 61529612 61529921 -127749633 - AluSx SINE Alu -9 303 1 377 267 216 48 chr6 61530282 61530597 -127748957 + LTR16A LTR ERVL 14 381 -69 210 205 154 26 chr6 61530855 61530933 -127748621 + MIR3 SINE MIR 108 195 -13 * 283 216 68 14 chr6 61530930 61531004 -127748550 - MIR SINE MIR -108 154 77 2018 123 24 68 chr6 61531147 61531307 -127748247 + THE1B LTR MaLR 1 167 -197 1985 124 21 3 chr6 61531307 61531598 -127747956 - AluSg SINE Alu -13 297 2 2018 123 24 68 chr6 61531598 61531818 -127747736 + THE1B LTR MaLR 167 364 0 2560 29 0 10 chr6 61531921 61532228 -127747326 - AluY SINE Alu -7 304 1 831 260 14 18 chr6 61532652 61532871 -127746683 + MER20 DNA MER1_type 1 218 -1 30 27 0 0 chr6 61533267 61533304 -127746250 + AT_rich Low_complexity Low_complexity 1 37 0 2238 90 3 7 chr6 61533304 61533594 -127745960 - AluSx SINE Alu -22 290 2 259 163 363 0 chr6 61533682 61533762 -127745792 + MIR SINE MIR 74 182 -80 185 212 136 61 chr6 61533749 61533815 -127745739 + L2 LINE L2 3200 3270 -43 * 570 265 71 51 chr6 61534347 61534600 -127744954 + MIR SINE MIR 5 262 0 255 61 0 0 chr6 61534682 61534715 -127744839 + (CACCAT)n Simple_repeat Simple_repeat 6 38 0 2497 129 0 0 chr6 61534828 61535192 -127744362 - THE1B LTR MaLR 0 364 1 9336 128 65 9 chr6 61535192 61536689 -127742865 - THE1B-int LTR MaLR 0 1580 1 2630 94 17 6 chr6 61536689 61537049 -127742505 - THE1B LTR MaLR 0 364 1 243 0 0 0 chr6 61537226 61537253 -127742301 + (CA)n Simple_repeat Simple_repeat 2 28 0 1448 146 71 21 chr6 61537265 61537505 -127742049 - AluJo SINE Alu -30 282 31 6108 138 96 96 chr6 61537508 61539203 -127740351 - pTR5 LTR ERV1 0 2438 743 2039 258 112 18 chr6 61539808 61540839 -127738715 - L1MC4 LINE L1 -206 7836 6709 510 214 40 24 chr6 61541099 61541225 -127738329 + Charlie1a DNA MER1_type 1 128 -1327 * 2041 238 34 24 chr6 61541221 61541818 -127737736 + Charlie1a DNA MER1_type 331 933 -522 205 299 103 0 chr6 61542324 61542421 -127737133 + L2 LINE L2 3151 3257 -15 453 181 75 0 chr6 61542769 61542863 -127736691 - MER105 DNA DNA -103 101 1 231 310 0 0 chr6 61542995 61543053 -127736501 + L2 LINE L2 3136 3193 -79 1656 185 6 14 chr6 61543081 61543427 -127736127 - L1MA4A LINE L1 -11 6292 5950 1645 120 34 24 chr6 61543429 61543720 -127735834 + L1M2 LINE L1 5513 5806 -494 736 160 40 7 chr6 61543891 61544041 -127735513 - L1MA9 LINE L1 -6 6306 6152 258 116 0 0 chr6 61544047 61544090 -127735464 + (TG)n Simple_repeat Simple_repeat 2 44 0 331 202 56 0 chr6 61544130 61544219 -127735335 - L1MA9 LINE L1 -173 6139 6046 192 77 0 0 chr6 61544558 61544584 -127734970 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 27 29 0 0 chr6 61544925 61544959 -127734595 + AT_rich Low_complexity Low_complexity 1 34 0 222 349 0 0 chr6 61546195 61546258 -127733296 - L2 LINE L2 -5 3267 3205 315 287 78 87 chr6 61547833 61548154 -127731400 + L2 LINE L2 2996 3313 0 25 31 0 0 chr6 61548232 61548264 -127731290 + AT_rich Low_complexity Low_complexity 1 32 0 197 231 148 74 chr6 61548739 61548847 -127730707 + MIR SINE MIR 35 150 -112 2290 100 0 0 chr6 61549112 61549401 -127730153 - AluSx SINE Alu -23 289 1 1406 197 95 45 chr6 61549864 61550347 -127729207 - Charlie4a DNA MER1_type -1 507 1 325 312 21 7 chr6 61550659 61550780 -127728774 - MIR SINE MIR -73 135 16 23 0 0 0 chr6 61550808 61550831 -127728723 + AT_rich Low_complexity Low_complexity 1 23 0 2417 66 7 0 chr6 61550978 61551279 -127728275 + AluY SINE Alu 1 303 -8 283 209 11 44 chr6 61551577 61551668 -127727886 + (TATATG)n Simple_repeat Simple_repeat 5 92 0 2150 94 0 36 chr6 61552016 61552351 -127727203 + AluSc SINE Alu 1 309 0 674 134 8 8 chr6 61552596 61552723 -127726831 - L1MB8 LINE L1 -6 6172 6046 2986 125 0 5 chr6 61552792 61553241 -127726313 - L1PA15 LINE L1 -1 6164 5718 2688 222 42 8 chr6 61553241 61553976 -127725578 - L1MB7 LINE L1 -110 6074 5315 1503 195 40 4 chr6 61554353 61554630 -127724924 + AluJb SINE Alu 1 287 -25 2180 212 60 2 chr6 61554699 61555217 -127724337 - L1MD3 LINE L1 0 7995 7448 215 346 53 80 chr6 61555728 61555916 -127723638 - MIR SINE MIR -48 214 32 388 333 49 37 chr6 61556455 61556701 -127722853 + MIR SINE MIR 2 250 -12 333 47 0 0 chr6 61558871 61558914 -127720640 + (CAA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr6 61559060 61559082 -127720472 + AT_rich Low_complexity Low_complexity 1 22 0 341 173 0 13 chr6 61559316 61559391 -127720163 + GA-rich Low_complexity Low_complexity 3 76 0 777 218 18 0 chr6 61561081 61561251 -127718303 - MER2 DNA MER2_type -172 173 1 593 314 54 21 chr6 61562087 61562326 -127717228 - MIR SINE MIR -13 249 3 281 89 22 0 chr6 61563088 61563141 -127716413 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 513 181 22 11 chr6 61563141 61563323 -127716231 + CT-rich Low_complexity Low_complexity 1 184 0 2076 175 24 0 chr6 61563352 61563735 -127715819 - L1MA9 LINE L1 -148 6164 5773 346 337 111 17 chr6 61564612 61564784 -127714770 + MER5A DNA MER1_type 1 188 -1 411 198 228 0 chr6 61565097 61565196 -127714358 - MER105 DNA DNA -37 167 46 685 180 8 0 chr6 61565196 61565318 -127714236 - Charlie1 DNA MER1_type 0 2761 2639 182 150 25 0 chr6 61565398 61565438 -127714116 + (TA)n Simple_repeat Simple_repeat 1 41 0 218 383 70 17 chr6 61565969 61566084 -127713470 + MIR3 SINE MIR 37 157 -51 3766 128 34 49 chr6 61567137 61567809 -127711745 - L1PA16 LINE L1 -180 5986 5325 1810 180 0 0 chr6 61568196 61568507 -127711047 + AluJb SINE Alu 2 312 0 5889 213 33 34 chr6 61568601 61569457 -127710097 + L1MB3 LINE L1 3646 4502 -1681 2460 206 19 9 chr6 61569457 61569922 -127709632 + MER70A LTR ERVL 3 472 0 5889 213 33 34 chr6 61569922 61571606 -127707948 + L1MB3 LINE L1 4502 6179 -4 226 26 0 26 chr6 61572288 61572327 -127707227 + L1P LINE L1 3855 3892 -2254 2016 66 0 0 chr6 61572766 61573025 -127706529 - L1PA7 LINE L1 -3 6151 5893 2887 67 3 0 chr6 61573025 61573400 -127706154 + L1PA7 LINE L1 5508 5883 -271 21 0 0 0 chr6 61573715 61573736 -127705818 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr6 61573931 61573960 -127705594 + AT_rich Low_complexity Low_complexity 1 29 0 185 356 0 39 chr6 61574776 61574880 -127704674 + MIR SINE MIR 55 154 -108 515 291 109 49 chr6 61575823 61576318 -127703236 - L2 LINE L2 0 3313 2791 352 369 151 3 chr6 61576950 61577302 -127702252 + L2 LINE L2 2236 2639 -675 329 399 32 32 chr6 61577680 61577868 -127701686 + L2 LINE L2 3075 3262 -10 189 261 0 0 chr6 61578252 61578298 -127701256 - MIR SINE MIR -55 153 108 1513 320 44 25 chr6 61578637 61579534 -127700020 + L2 LINE L2 2384 3294 -19 16293 75 5 0 chr6 61579604 61582575 -127696979 + L1PA6 LINE L1 3169 6154 0 22 0 0 0 chr6 61582757 61582779 -127696775 + AT_rich Low_complexity Low_complexity 1 22 0 1486 182 47 60 chr6 61583798 61584178 -127695376 + THE1C LTR MaLR 1 375 0 1547 183 0 32 chr6 61584971 61585255 -127694299 - AluJb SINE Alu -7 305 31 182 371 0 10 chr6 61585284 61585381 -127694173 - L3 LINE CR1 -848 729 634 2097 256 37 11 chr6 61585675 61586218 -127693336 - LTR26 LTR ERV1 0 603 47 225 111 0 28 chr6 61586232 61586268 -127693286 + tRNA-Gly-GGG tRNA tRNA 1 35 -39 500 345 98 16 chr6 61588031 61588419 -127691135 - L3 LINE CR1 -394 1183 764 265 156 67 0 chr6 61588728 61588773 -127690781 - MER5A DNA MER1_type -47 142 95 2043 131 0 14 chr6 61588780 61589096 -127690458 - AluSx SINE Alu 0 312 1 6325 84 15 6 chr6 61589097 61590500 -127689054 - L1PA13 LINE L1 -12 6151 4741 21 0 0 0 chr6 61590705 61590726 -127688828 + AT_rich Low_complexity Low_complexity 1 21 0 511 229 0 0 chr6 61590821 61590917 -127688637 - FLAM_A SINE Alu -46 96 1 413 285 212 0 chr6 61591311 61591476 -127688078 + L2 LINE L2 2168 2367 -947 990 65 35 12 chr6 61591559 61591652 -127687902 + (TTTC)n Simple_repeat Simple_repeat 1 268 0 990 65 35 12 chr6 61591652 61591821 -127687733 + (TTTC)n Simple_repeat Simple_repeat 2 174 0 1978 132 4 0 chr6 61591969 61592291 -127687263 + AluSq SINE Alu 3 325 0 252 291 0 13 chr6 61592305 61592384 -127687170 - L1ME3 LINE L1 -24 6138 6061 2201 100 30 0 chr6 61592483 61592784 -127686770 + AluSg SINE Alu 1 310 0 261 0 0 0 chr6 61592785 61592814 -127686740 + (TA)n Simple_repeat Simple_repeat 1 29 0 380 333 100 33 chr6 61593062 61593235 -127686319 + MIR SINE MIR 12 203 -59 1835 175 9 26 chr6 61593235 61593583 -127685971 + MER2 DNA MER2_type 2 343 -1 380 333 100 33 chr6 61593583 61593619 -127685935 + MIR SINE MIR 203 235 -27 198 302 93 12 chr6 61594434 61594520 -127685034 + L2 LINE L2 3165 3257 -56 2684 238 69 52 chr6 61594531 61595550 -127684004 - L1MC4a LINE L1 -1205 6603 5568 5739 50 1 3 chr6 61595566 61596280 -127683274 + L1PA4 LINE L1 5417 6129 -26 1850 142 9 22 chr6 61597943 61598259 -127681295 - AluSq SINE Alu -1 312 1 222 288 17 0 chr6 61598547 61598606 -127680948 - MIR SINE MIR -1 261 202 22 35 0 0 chr6 61598672 61598701 -127680853 + AT_rich Low_complexity Low_complexity 1 29 0 860 250 34 34 chr6 61600586 61600938 -127678616 - L1M4 LINE L1 -2352 5213 4862 550 98 5 31 chr6 61602111 61602220 -127677334 - L1PA16 LINE L1 -336 5818 5728 407 235 265 0 chr6 61602344 61602506 -127677048 - MER3 DNA MER1_type 0 209 5 249 313 0 0 chr6 61602594 61602658 -127676896 + L2 LINE L2 2299 2362 -952 1949 210 59 9 chr6 61602738 61603195 -127676359 - L1M4 LINE L1 -5118 2447 1968 614 287 113 54 chr6 61603269 61603727 -127675827 - L1M4 LINE L1 -6508 981 209 1847 94 12 0 chr6 61603823 61604079 -127675475 - AluSg SINE Alu -8 302 44 212 179 0 0 chr6 61605673 61605712 -127673842 + A-rich Low_complexity Low_complexity 1 39 0 181 0 69 0 chr6 61606487 61606516 -127673038 + (TG)n Simple_repeat Simple_repeat 2 32 0 35 54 0 0 chr6 61608313 61608369 -127671185 + AT_rich Low_complexity Low_complexity 1 56 0 235 411 16 8 chr6 61608505 61608629 -127670925 + MIR SINE MIR 16 140 -68 21 57 0 0 chr6 61609995 61610030 -127669524 + AT_rich Low_complexity Low_complexity 1 35 0 2437 88 0 33 chr6 61610237 61610601 -127668953 - L1PB1 LINE L1 -18 6133 5782 245 218 35 69 chr6 61610601 61610688 -127668866 - L1MC4 LINE L1 -1344 6698 6615 586 138 55 5 chr6 61610701 61610922 -127668632 + (TA)n Simple_repeat Simple_repeat 1 232 0 474 123 35 24 chr6 61610933 61611103 -127668451 + (TTATA)n Simple_repeat Simple_repeat 3 174 0 * 655 129 41 6 chr6 61611092 61611262 -127668292 + (TA)n Simple_repeat Simple_repeat 1 176 0 4300 172 19 18 chr6 61611262 61612756 -127666798 - L1P5 LINE L1 -360 6507 5022 12808 110 45 2 chr6 61612756 61615158 -127664396 - L1P5 LINE L1 -4371 2492 1 721 195 54 36 chr6 61617362 61617394 -127662160 - MER33 DNA MER1_type -2347 238 208 1301 244 67 31 chr6 61617394 61617845 -127661709 + MLT1C LTR MaLR 1 467 0 721 195 54 36 chr6 61617845 61618033 -127661521 - MER33 DNA MER1_type -2377 208 14 206 386 39 16 chr6 61619391 61619518 -127660036 - MIR SINE MIR -108 154 25 1649 163 0 60 chr6 61619935 61620279 -127659275 + AluJo SINE Alu 1 326 0 336 312 32 0 chr6 61624017 61624110 -127655444 + L2 LINE L2 3177 3272 0 5673 140 105 49 chr6 61624842 61625592 -127653962 + MER51A-int LTR ERV1 6619 7455 -361 189 0 0 0 chr6 61625592 61625613 -127653941 + (CAAAC)n Simple_repeat Simple_repeat 4 24 0 5673 140 105 49 chr6 61625613 61625997 -127653557 + MER51A-int LTR ERV1 7455 7816 0 316 134 194 0 chr6 61625999 61626066 -127653488 + MER51A LTR ERV1 1 80 -554 1120 173 55 10 chr6 61626068 61626270 -127653284 + MER50 LTR ERV1 287 497 -237 3066 105 5 0 chr6 61626277 61626705 -127652849 - MER41A LTR ERV1 -124 430 1 13622 125 32 18 chr6 61626705 61629427 -127650127 - MER41A-int LTR ERV1 -2 5944 2954 1843 143 3 53 chr6 61629427 61629749 -127649805 - AluY SINE Alu -5 306 1 13622 125 32 18 chr6 61629749 61630530 -127649024 - MER41A-int LTR ERV1 -2992 2954 2186 4121 137 16 5 chr6 61630506 61631134 -127648420 - MER41A-int LTR ERV1 -5311 635 1 * 4122 83 5 0 chr6 61631134 61631685 -127647869 - MER41A LTR ERV1 0 554 1 1483 124 0 5 chr6 61631685 61631902 -127647652 + MER50 LTR ERV1 492 707 -27 313 190 101 0 chr6 61632296 61632375 -127647179 - L1MCa LINE L1 -4863 1563 1477 * 731 217 45 153 chr6 61632368 61632547 -127647007 - L1M4 LINE L1 -1840 4306 4109 3444 132 55 12 chr6 61632547 61633132 -127646422 + MER4B LTR ERV1 1 610 0 731 217 45 153 chr6 61633132 61633240 -127646314 - L1M4 LINE L1 -2037 4109 3991 7517 29 7 0 chr6 61633240 61634391 -127645163 + L1PA4 LINE L1 4999 6155 0 731 217 45 153 chr6 61634391 61634613 -127644941 - L1M4 LINE L1 -2155 3991 3851 180 152 0 0 chr6 61634613 61634646 -127644908 + (TA)n Simple_repeat Simple_repeat 1 33 0 2479 68 0 3 chr6 61634690 61635001 -127644553 - AluY SINE Alu -1 310 1 425 364 156 7 chr6 61635002 61635343 -127644211 + L2 LINE L2 2617 3005 -308 251 272 22 33 chr6 61635362 61635454 -127644100 + L2 LINE L2 2701 2791 -523 646 265 37 85 chr6 61635462 61635756 -127643798 + L2 LINE L2 3034 3313 0 344 429 21 0 chr6 61635911 61636144 -127643410 - L2 LINE L2 -349 2965 2728 2220 189 89 34 chr6 61636469 61637030 -127642524 - L1MD3 LINE L1 0 7995 7404 272 267 22 22 chr6 61637030 61637120 -127642434 - MLT1F1 LTR MaLR -442 125 36 314 315 105 27 chr6 61637163 61637458 -127642096 - L2 LINE L2 -1299 2015 1698 649 191 67 96 chr6 61638237 61638446 -127641108 - MER3 DNA MER1_type 0 209 7 235 324 84 28 chr6 61638549 61638691 -127640863 + L2 LINE L2 2292 2441 -873 2629 96 3 6 chr6 61639151 61639516 -127640038 + THE1B LTR MaLR 1 364 0 2005 126 0 0 chr6 61639582 61639883 -127639671 - Tigger1 DNA MER2_type -891 1527 1227 2348 86 0 0 chr6 61639883 61640175 -127639379 + AluSg SINE Alu 1 292 -18 9247 220 22 46 chr6 61640179 61640912 -127638642 + L1PA11 LINE L1 6 756 -5705 2133 119 7 0 chr6 61640912 61641207 -127638347 - AluSg SINE Alu -13 297 1 9247 220 22 46 chr6 61641207 61643732 -127635822 + L1PA11 LINE L1 756 3210 -3251 1176 142 0 16 chr6 61643716 61643899 -127635655 - THE1-int LTR MaLR -286 1294 1115 * 1073 153 23 6 chr6 61643899 61644075 -127635479 + THE1B LTR MaLR 185 363 -1 8143 148 7 2 chr6 61644075 61646251 -127633303 + L1PA11 LINE L1 4297 6488 -1 6813 148 25 35 chr6 61646251 61646530 -127633024 - Tigger1 DNA MER2_type -1185 1233 953 1121 174 22 9 chr6 61646530 61646754 -127632800 + L1PA16 LINE L1 5940 6166 0 6813 148 25 35 chr6 61646754 61646789 -127632765 - Tigger1 DNA MER2_type -1465 953 919 1829 189 0 0 chr6 61646789 61647090 -127632464 - AluSx SINE Alu -11 301 1 6813 148 25 35 chr6 61647090 61648019 -127631535 - Tigger1 DNA MER2_type -1499 919 1 2052 157 24 85 chr6 61648019 61648523 -127631031 + L1MB3 LINE L1 5682 6154 -29 1926 219 43 35 chr6 61648655 61649190 -127630364 - MER67A LTR ERV1 0 543 5 26 30 0 0 chr6 61650920 61650953 -127628601 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr6 61651500 61651526 -127628028 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr6 61651884 61651909 -127627645 + AT_rich Low_complexity Low_complexity 1 25 0 402 244 24 31 chr6 61652685 61652812 -127626742 - MIR SINE MIR -43 219 94 21 0 0 0 chr6 61653637 61653658 -127625896 + AT_rich Low_complexity Low_complexity 1 21 0 681 307 65 4 chr6 61653797 61654028 -127625526 + MIR SINE MIR 13 257 -5 459 294 96 0 chr6 61654578 61654724 -127624830 + MER5A DNA MER1_type 29 188 -1 311 261 130 0 chr6 61654743 61654835 -127624719 + MIR SINE MIR 34 137 -125 278 230 14 3 chr6 61655562 61655642 -127623912 + HsTC2 DNA Tc2 1818 1896 -2 4354 95 18 0 chr6 61655704 61656314 -127623240 + L1PA10 LINE L1 5544 6164 -4 21 0 0 0 chr6 61657639 61657660 -127621894 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 61659393 61659414 -127620140 + AT_rich Low_complexity Low_complexity 1 21 0 409 299 89 59 chr6 61659526 61659918 -127619636 + L1MEd LINE L1 1190 1593 -4937 860 212 0 6 chr6 61659966 61660131 -127619423 + FAM SINE Alu 1 164 -11 321 68 0 0 chr6 61660132 61660176 -127619378 + (GA)n Simple_repeat Simple_repeat 2 45 0 319 320 20 0 chr6 61660208 61660308 -127619246 + HAL1 LINE L1 1379 1480 -1027 3088 88 16 2 chr6 61660906 61661349 -127618205 + L1MA1 LINE L1 5854 6302 0 30 0 0 0 chr6 61661458 61661488 -127618066 + AT_rich Low_complexity Low_complexity 1 30 0 835 253 40 69 chr6 61662472 61662851 -127616703 + L1MEd LINE L1 34 401 -6139 2077 228 89 36 chr6 61662908 61663708 -127615846 + L1MEd LINE L1 1695 2536 -4004 285 321 67 8 chr6 61664367 61664501 -127615053 + MIR SINE MIR 65 206 -56 402 21 0 0 chr6 61665682 61665729 -127613825 + (CA)n Simple_repeat Simple_repeat 2 48 0 2573 45 0 3 chr6 61666181 61666493 -127613061 - AluY SINE Alu 0 311 1 230 207 83 77 chr6 61666953 61667122 -127612432 - L1ME LINE L1 -312 5809 5640 422 297 81 29 chr6 61668122 61668368 -127611186 - MIR SINE MIR 0 262 4 2479 48 0 13 chr6 61671662 61671977 -127607577 - AluY SINE Alu 0 311 1 27 81 0 0 chr6 61672420 61672482 -127607072 + AT_rich Low_complexity Low_complexity 1 62 0 235 274 12 24 chr6 61672866 61672950 -127606604 + GA-rich Low_complexity Low_complexity 2 84 0 1322 218 0 50 chr6 61674491 61674812 -127604742 + AluJo SINE Alu 1 305 -7 594 156 10 0 chr6 61676065 61676161 -127603393 - L1MC/D LINE L1 -460 5782 5686 245 298 43 43 chr6 61677097 61677238 -127602316 + MIR SINE MIR 48 188 -74 256 254 45 15 chr6 61678119 61678186 -127601368 + MIR SINE MIR 21 89 -119 272 296 86 7 chr6 61678530 61678682 -127600872 - L1M4 LINE L1 -2258 3888 3725 707 270 11 11 chr6 61678805 61678990 -127600564 + MLT1B LTR MaLR 206 390 0 1976 235 15 11 chr6 61678990 61679663 -127599891 + MLT1B-int LTR MaLR 1 887 -484 341 256 0 0 chr6 61679728 61679810 -127599744 + MLT-int LTR MaLR 686 767 -968 1928 253 39 7 chr6 61679931 61680393 -127599161 + MLT1B-int LTR MaLR 1256 1732 -3 720 219 70 135 chr6 61680402 61680817 -127598737 + MLT1B LTR MaLR 1 388 -2 2972 166 34 71 chr6 61680819 61681523 -127598031 + L1MB3 LINE L1 5502 6179 -4 2225 173 59 5 chr6 61682617 61683021 -127596533 + MSTB LTR MaLR 1 426 0 226 334 0 0 chr6 61683940 61684011 -127595543 + MIR SINE MIR 72 143 -65 611 354 28 0 chr6 61684175 61684387 -127595167 - MIR SINE MIR -28 234 17 827 204 167 34 chr6 61684584 61684907 -127594647 + LOR1b LTR ERV1 96 461 0 2235 23 4 0 chr6 61685332 61685596 -127593958 + L1PA3 LINE L1 5888 6152 -3 303 310 179 0 chr6 61686270 61686415 -127593139 + MIR SINE MIR 87 257 -5 547 257 95 0 chr6 61686961 61687109 -127592445 + MER5A DNA MER1_type 28 189 0 333 258 124 21 chr6 61687127 61687224 -127592330 + MIR SINE MIR 34 140 -122 420 248 62 31 chr6 61687771 61687932 -127591622 + LTR16C LTR ERVL 324 489 -2 360 0 0 0 chr6 61688185 61688225 -127591329 + (TG)n Simple_repeat Simple_repeat 1 40 0 593 360 84 39 chr6 61688448 61689606 -127589948 + L2 LINE L2 368 1577 -1737 1002 157 7 0 chr6 61689718 61689871 -127589683 - AluSc SINE Alu -23 286 133 215 324 7 34 chr6 61689871 61690019 -127589535 + L2 LINE L2 1674 1817 -1497 724 206 25 60 chr6 61690096 61690295 -127589259 + MER20 DNA MER1_type 27 218 -1 228 342 116 17 chr6 61690296 61690597 -127588957 + L2 LINE L2 1871 2201 -1113 194 373 151 16 chr6 61690602 61690854 -127588700 + L2 LINE L2 2670 2955 -359 24 32 0 0 chr6 61692039 61692070 -127587484 + AT_rich Low_complexity Low_complexity 1 31 0 569 349 13 8 chr6 61692395 61692630 -127586924 + MIR SINE MIR 26 261 -1 1650 237 66 47 chr6 61692926 61693411 -127586143 + MLT1D LTR MaLR 12 505 0 2629 208 37 30 chr6 61694150 61694717 -127584837 + L1M4c LINE L1 2 572 -6277 * 9481 221 45 25 chr6 61694715 61696940 -127582614 + L1M4c LINE L1 2040 4764 -2084 1885 155 10 3 chr6 61696940 61697231 -127582323 + AluSx SINE Alu 1 293 -19 9481 221 45 25 chr6 61697231 61697679 -127581875 + L1M4c LINE L1 4764 5201 -1647 268 279 29 21 chr6 61699230 61699246 -127580308 - L1MA10 LINE L1 0 6334 6319 1932 263 68 42 chr6 61699246 61699723 -127579831 - L1ME3 LINE L1 -7 6155 5692 402 21 0 0 chr6 61699723 61699770 -127579784 + (TG)n Simple_repeat Simple_repeat 2 48 0 1932 263 68 42 chr6 61699770 61700364 -127579190 - L1ME3 LINE L1 -470 5692 5050 653 317 15 24 chr6 61700379 61700710 -127578844 + L1ME3 LINE L1 5392 5719 -1129 415 299 94 18 chr6 61701620 61701844 -127577710 - MIR SINE MIR -4 258 18 318 318 9 9 chr6 61702176 61702286 -127577268 - L2 LINE L2 -4 3309 3200 26 0 0 0 chr6 61702766 61702792 -127576762 + AT_rich Low_complexity Low_complexity 1 26 0 1733 279 60 4 chr6 61704370 61704883 -127574671 - MLT1F LTR MaLR 0 542 1 1403 223 13 60 chr6 61705077 61705458 -127574096 + MLT1A1 LTR MaLR 1 363 -2 599 309 186 6 chr6 61705584 61705950 -127573604 - LTR33 LTR ERVL 0 521 90 2067 116 0 19 chr6 61706153 61706504 -127573050 + AluSq SINE Alu 1 345 0 739 103 50 3 chr6 61706615 61706959 -127572595 + (TA)n Simple_repeat Simple_repeat 1 360 0 711 137 0 16 chr6 61706979 61707162 -127572392 + (TA)n Simple_repeat Simple_repeat 1 180 0 22 103 0 8 chr6 61707166 61707199 -127572355 + AT_rich Low_complexity Low_complexity 1 33 -83 2219 141 0 3 chr6 61707199 61707568 -127571986 + L1PB1 LINE L1 5784 6151 0 22 103 0 8 chr6 61707568 61707651 -127571903 + AT_rich Low_complexity Low_complexity 33 116 0 737 243 145 55 chr6 61707902 61708327 -127571227 + MLT1C LTR MaLR 1 464 -3 501 310 87 29 chr6 61708393 61708738 -127570816 - L1ME3A LINE L1 -189 5981 5617 2156 60 3 3 chr6 61709260 61709567 -127569987 + AluY SINE Alu 1 307 0 1992 186 25 32 chr6 61709910 61710346 -127569208 + Tigger2a DNA MER2_type 1 433 -1 2272 202 23 39 chr6 61710809 61711324 -127568230 + MER67D LTR ERV1 8 514 0 436 247 97 39 chr6 61712561 61712715 -127566839 - HAL1 LINE L1 -1603 904 742 364 188 0 0 chr6 61713385 61713449 -127566105 - MER92C LTR ERV1 0 554 491 328 257 14 0 chr6 61713621 61713695 -127565859 - MER92B LTR ERV1 -561 75 1 1074 200 57 5 chr6 61714172 61714466 -127565088 + MER67C LTR ERV1 245 457 -57 358 174 54 33 chr6 61714446 61714538 -127565016 + MER92B LTR ERV1 543 636 0 * 284 290 113 99 chr6 61714689 61715034 -127564520 - HAL1 LINE L1 -1879 628 279 301 278 33 11 chr6 61716007 61716097 -127563457 + MER5A DNA MER1_type 86 177 -12 456 332 28 43 chr6 61717162 61717373 -127562181 - MIR SINE MIR -50 212 5 290 311 42 17 chr6 61717381 61717500 -127562054 + MIR SINE MIR 99 220 -42 21 36 0 0 chr6 61718041 61718069 -127561485 + AT_rich Low_complexity Low_complexity 1 28 0 207 227 303 34 chr6 61719710 61719829 -127559725 - MIR SINE MIR -64 198 48 2438 128 70 2 chr6 61720037 61720436 -127559118 - MSTB LTR MaLR 0 426 1 21 57 0 0 chr6 61721868 61721903 -127557651 + AT_rich Low_complexity Low_complexity 1 35 0 333 0 0 0 chr6 61722243 61722280 -127557274 + (TG)n Simple_repeat Simple_repeat 2 38 0 12769 196 57 13 chr6 61725413 61730737 -127548817 - L1PBa LINE L1 -1157 5705 6 1619 245 17 40 chr6 61730875 61731344 -127548210 + LTR22A LTR ERVK 1 458 0 5189 118 24 4 chr6 61731344 61732106 -127547448 + HERVK22 LTR ERVK 1 777 -6060 * 22103 106 5 3 chr6 61732076 61735285 -127544269 + HERVK22 LTR ERVK 2294 6837 0 592 139 131 8 chr6 61735285 61735407 -127544147 + LTR22 LTR ERVK 1 137 -372 292 21 10 104 chr6 61735453 61735549 -127544005 + (TA)n Simple_repeat Simple_repeat 1 87 0 189 121 0 0 chr6 61735542 61735575 -127543979 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 14481 168 49 17 chr6 61735589 61737990 -127541564 + L1MA3 LINE L1 17 2340 -5384 2181 87 0 4 chr6 61737990 61738267 -127541287 + AluY SINE Alu 36 311 0 14481 168 49 17 chr6 61738267 61739513 -127540041 + L1MA3 LINE L1 2340 3545 -4179 2266 138 46 0 chr6 61739513 61739904 -127539650 + L1PA13 LINE L1 5754 6162 -1 14481 168 49 17 chr6 61739904 61741295 -127538259 + L1MA3 LINE L1 3545 4890 -2834 351 0 0 0 chr6 61741295 61741334 -127538220 + (CA)n Simple_repeat Simple_repeat 2 40 0 14481 168 49 17 chr6 61741334 61741579 -127537975 + L1MA3 LINE L1 4890 5126 -2598 252 77 0 0 chr6 61741579 61741618 -127537936 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 14481 168 49 17 chr6 61741618 61743426 -127536128 + L1MA3 LINE L1 5126 7723 -1 3509 113 35 4 chr6 61743483 61744033 -127535521 + Tigger4(Zombi) DNA MER2_type 2164 2730 -1 9727 152 20 10 chr6 61745272 61747782 -127531772 - L1PA11 LINE L1 -2 6172 3631 193 0 61 30 chr6 61749123 61749156 -127530398 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 954 68 8 8 chr6 61749156 61749289 -127530265 - L1PA4 LINE L1 -14 6141 6009 7246 31 0 1 chr6 61749289 61750777 -127528777 + L1PA4 LINE L1 4518 6004 -151 183 80 0 0 chr6 61851618 61851643 -127427911 + (TG)n Simple_repeat Simple_repeat 2 26 0 693 286 71 5 chr6 61851790 61852014 -127427540 - MIR SINE MIR -15 247 9 1876 304 122 23 chr6 61852276 61853192 -127426362 + L3 LINE CR1 411 1417 -160 237 328 126 30 chr6 61853609 61854014 -127425540 - L1ME LINE L1 -361 5760 5317 2079 125 0 0 chr6 61854416 61854719 -127424835 + AluSg SINE Alu 2 304 -6 635 183 0 8 chr6 61854881 61855001 -127424553 - L1PA15 LINE L1 0 6165 6047 1803 148 16 14 chr6 61855001 61855526 -127424028 - L1P4 LINE L1 -609 5556 5029 242 250 11 0 chr6 61855519 61855607 -127423947 - L1P LINE L1 -2975 3171 3083 * 614 244 11 0 chr6 61855605 61855781 -127423773 + L1 LINE L1 3351 3528 -2618 * 6609 213 79 7 chr6 61855779 61857358 -127422196 - L1P4 LINE L1 -1102 5044 3352 887 229 8 12 chr6 61857357 61857601 -127421953 + L1P4 LINE L1 3083 3325 -2821 * 198 0 0 0 chr6 61857651 61857673 -127421881 + (TG)n Simple_repeat Simple_repeat 2 23 0 216 354 0 0 chr6 61858082 61858161 -127421393 + L3b LINE CR1 1254 1332 -251 263 371 53 16 chr6 61858430 61858748 -127420806 + L1MC/D LINE L1 5391 5720 -2088 29 0 0 0 chr6 61858940 61858969 -127420585 + AT_rich Low_complexity Low_complexity 1 29 0 1376 184 32 46 chr6 61860727 61861044 -127418510 - AluJo SINE Alu 0 316 4 251 318 9 0 chr6 61861403 61861513 -127418041 + (TA)n Simple_repeat Simple_repeat 2 112 0 2804 209 42 34 chr6 61861513 61861921 -127417633 - MER82 DNA MER2_type 0 653 237 1743 187 59 35 chr6 61861921 61862376 -127417178 + MER31B LTR ERV1 1 466 0 2804 209 42 34 chr6 61862376 61862613 -127416941 - MER82 DNA MER2_type -416 237 3 215 209 0 0 chr6 61862829 61862872 -127416682 + GA-rich Low_complexity Low_complexity 2 44 0 514 171 60 17 chr6 61865312 61865429 -127414125 - MER31A LTR ERV1 0 485 364 2811 75 5 0 chr6 61865429 61865802 -127413752 - L1P LINE L1 -1120 5026 4652 * 6677 56 9 0 chr6 61865795 61866827 -127412727 + L1PA5 LINE L1 5067 6107 -47 1679 197 10 38 chr6 61866848 61867239 -127412315 - MER31A LTR ERV1 -104 381 2 528 271 38 46 chr6 61867249 61867489 -127412065 + L2 LINE L2 3076 3313 0 207 100 0 0 chr6 61868445 61868475 -127411079 + (CAA)n Simple_repeat Simple_repeat 2 31 0 270 173 25 12 chr6 61869820 61869901 -127409653 + CT-rich Low_complexity Low_complexity 4 85 0 1501 136 296 3 chr6 61872230 61872561 -127406993 + MSTA LTR MaLR 1 428 0 26 74 0 0 chr6 61874598 61874652 -127404902 + AT_rich Low_complexity Low_complexity 1 54 0 5677 111 16 3 chr6 61874816 61875742 -127403812 + L1MA1 LINE L1 5364 6301 -1 211 182 0 0 chr6 61876242 61876275 -127403279 + polypyrimidine Low_complexity Low_complexity 1 33 0 257 344 21 0 chr6 61877336 61877429 -127402125 + L2 LINE L2 2494 2588 -726 1387 151 87 4 chr6 61877471 61877736 -127401818 + LTR57 LTR ERVL 125 411 0 2062 144 41 36 chr6 61878065 61878427 -127401127 + THE1B LTR MaLR 1 364 0 11152 106 13 3 chr6 61878428 61879990 -127399564 + THE1B-int LTR MaLR 2 1580 0 1876 161 8 25 chr6 61879990 61880351 -127399203 + THE1A LTR MaLR 1 355 0 721 297 38 60 chr6 61880381 61880748 -127398806 - L1M2c LINE L1 -6168 621 263 10900 197 42 29 chr6 61880769 61882382 -127397172 + L1PA13 LINE L1 1 1666 -5131 2134 104 13 20 chr6 61882382 61882680 -127396874 - AluY SINE Alu -15 296 1 10900 197 42 29 chr6 61882680 61883367 -127396187 + L1PA13 LINE L1 1666 2343 -4454 10236 200 4 23 chr6 61883367 61884536 -127395018 + L1PA13 LINE L1 3844 5033 -1781 1902 176 24 21 chr6 61884536 61884872 -127394682 - MER1B DNA MER1_type 0 337 1 10236 200 4 23 chr6 61884872 61886697 -127392857 + L1PA13 LINE L1 5033 6795 -19 241 289 70 114 chr6 61886697 61886970 -127392584 - L1M2c LINE L1 -6526 263 3 794 335 76 38 chr6 61886972 61887562 -127391992 + L2 LINE L2 2619 3220 -93 1264 249 33 33 chr6 61887562 61887952 -127391602 - MLT1B LTR MaLR 0 390 1 234 116 0 0 chr6 61889343 61889386 -127390168 + (TA)n Simple_repeat Simple_repeat 2 44 0 608 90 20 0 chr6 61889395 61889495 -127390059 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 1351 209 77 25 chr6 61889656 61890019 -127389535 - L1MB5 LINE L1 -104 6070 5689 2641 257 117 23 chr6 61890196 61891324 -127388230 - L1MEc LINE L1 -5118 1278 45 21 0 0 0 chr6 61891531 61891552 -127388002 + AT_rich Low_complexity Low_complexity 1 21 0 346 327 18 0 chr6 61892684 61892797 -127386757 + L3 LINE CR1 674 788 -789 214 147 0 0 chr6 61892880 61892914 -127386640 + (TG)n Simple_repeat Simple_repeat 1 34 0 1588 174 48 28 chr6 61893672 61894029 -127385525 - MLT1B LTR MaLR -26 364 1 373 334 86 47 chr6 61894076 61894316 -127385238 - HERV16 LTR ERVL -2296 3468 3208 2313 106 0 6 chr6 61894316 61894627 -127384927 - AluSg SINE Alu -1 309 1 373 334 86 47 chr6 61894627 61894748 -127384806 - HERV16 LTR ERVL -2556 3208 3093 1005 329 50 15 chr6 61894749 61895287 -127384267 - HERV16 LTR ERVL -2022 2974 2418 1179 310 47 40 chr6 61895304 61896069 -127383485 - HERV16 LTR ERVL -3906 1090 321 540 341 5 9 chr6 61896106 61896317 -127383237 - HERV16 LTR ERVL -4752 244 35 278 329 72 0 chr6 61896359 61896526 -127383028 - LTR16A LTR ERVL -12 438 260 337 162 29 0 chr6 61897214 61897282 -127382272 + MLT1F LTR MaLR 466 535 -7 360 340 12 37 chr6 61897299 61897461 -127382093 + L2 LINE L2 3155 3312 -1 23 54 0 0 chr6 61898600 61898637 -127380917 + AT_rich Low_complexity Low_complexity 1 37 0 214 156 31 0 chr6 61898643 61898707 -127380847 + (TA)n Simple_repeat Simple_repeat 1 66 0 1568 213 96 14 chr6 61900125 61900491 -127379063 - MSTD LTR MaLR 0 396 1 6963 167 153 19 chr6 61900686 61902234 -127377320 + MER52A LTR ERV1 1 1755 0 365 259 121 30 chr6 61902851 61903017 -127376537 - L2 LINE L2 -11 3302 3122 2221 119 0 0 chr6 61903971 61904264 -127375290 + AluSq SINE Alu 3 295 -18 2398 60 0 13 chr6 61904577 61904878 -127374676 - AluSc SINE Alu -12 297 1 2194 111 6 13 chr6 61906148 61906463 -127373091 - AluSp SINE Alu 0 313 1 209 154 58 19 chr6 61907374 61907426 -127372128 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 181 283 75 0 chr6 61908821 61908874 -127370680 - L2 LINE L2 -225 3047 2991 380 250 139 7 chr6 61908954 61909098 -127370456 - MIR SINE MIR -73 189 27 207 315 87 92 chr6 61909294 61909593 -127369961 - L2 LINE L2 -452 2862 2564 1845 173 0 7 chr6 61909593 61909899 -127369655 + AluJb SINE Alu 1 304 -8 207 315 87 92 chr6 61909899 61910091 -127369463 - L2 LINE L2 -750 2564 2373 23 33 0 0 chr6 61910734 61910764 -127368790 + AT_rich Low_complexity Low_complexity 1 30 0 2237 101 0 7 chr6 61911255 61911552 -127368002 - AluY SINE Alu -15 296 2 289 309 37 12 chr6 61911902 61911983 -127367571 + MIR SINE MIR 10 92 -170 41960 42 1 3 chr6 61912601 61918763 -127360791 + L1PA4 LINE L1 8 6152 -3 445 337 76 6 chr6 61919515 61919687 -127359867 + MIR3 SINE MIR 16 199 -9 264 271 28 37 chr6 61920442 61920549 -127359005 - MIR SINE MIR -7 255 150 349 310 33 33 chr6 61921612 61921796 -127357758 + MIR SINE MIR 79 262 0 24 77 0 0 chr6 61923581 61923633 -127355921 + AT_rich Low_complexity Low_complexity 1 52 0 224 297 0 0 chr6 61923652 61923726 -127355828 + (TA)n Simple_repeat Simple_repeat 1 74 0 285 339 70 17 chr6 61926083 61926320 -127353234 + MIR3 SINE MIR 11 262 0 198 260 80 40 chr6 61926642 61926742 -127352812 + MIR SINE MIR 157 260 -2 255 304 22 11 chr6 61927262 61927354 -127352200 - MIR SINE MIR -14 248 156 21 0 0 0 chr6 61927695 61927716 -127351838 + AT_rich Low_complexity Low_complexity 1 21 0 796 250 57 29 chr6 61928014 61928258 -127351296 - MIR SINE MIR -1 261 11 1010 261 13 36 chr6 61930326 61930633 -127348921 - L1MD2 LINE L1 -5 6354 6055 4227 240 57 38 chr6 61930665 61932397 -127347157 - L1MDa LINE L1 -3515 3025 1183 2504 55 0 7 chr6 61932397 61932706 -127346848 + AluY SINE Alu 1 307 -4 4227 240 57 38 chr6 61932706 61933044 -127346510 - L1MDa LINE L1 -5357 1183 853 529 280 63 85 chr6 61933196 61933514 -127346040 - L1MDa LINE L1 -6196 344 34 594 273 59 86 chr6 61933670 61934007 -127345547 - L1MDa LINE L1 -6196 344 17 257 279 87 19 chr6 61934008 61934112 -127345442 + MIR SINE MIR 104 214 -48 448 16 33 0 chr6 61934896 61934957 -127344597 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 529 306 70 36 chr6 61935310 61935611 -127343943 - L2 LINE L2 -1390 1924 1614 417 127 0 0 chr6 61935940 61936003 -127343551 + L1MA4A LINE L1 6063 6125 -178 6097 90 16 4 chr6 61936004 61937206 -127342348 - L1PA13 LINE L1 -5 6158 4949 1015 99 23 17 chr6 61937206 61937318 -127342236 + L1MA4A LINE L1 6125 6245 -58 387 147 67 0 chr6 61937318 61937393 -127342161 + MADE1 DNA Mariner 1 80 0 1015 99 23 17 chr6 61937393 61937447 -127342107 + L1MA4A LINE L1 6245 6297 -6 231 293 20 20 chr6 61938268 61938415 -127341139 - L1MC4a LINE L1 -1564 6244 6098 514 277 98 13 chr6 61938428 61938663 -127340891 - L1MC4a LINE L1 -1795 6013 5759 190 379 0 0 chr6 61938919 61938977 -127340577 - MIR SINE MIR -135 73 16 243 316 13 0 chr6 61939968 61940044 -127339510 + GA-rich Low_complexity Low_complexity 1 77 0 333 155 0 0 chr6 61942575 61942633 -127336921 + CT-rich Low_complexity Low_complexity 4 61 0 2382 143 17 38 chr6 61942633 61943109 -127336445 - L1MA8 LINE L1 0 6291 5826 1102 271 207 26 chr6 61944149 61944603 -127334951 + MLT1G LTR MaLR 10 545 -45 26 50 0 0 chr6 61945635 61945675 -127333879 + AT_rich Low_complexity Low_complexity 1 40 0 618 200 17 94 chr6 61946107 61946287 -127333267 - MER20 DNA MER1_type -17 202 37 241 227 23 23 chr6 61948810 61948898 -127330656 - L1MC4 LINE L1 -1340 6702 6615 446 71 29 0 chr6 61948906 61948976 -127330578 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 532 230 62 12 chr6 61949117 61949278 -127330276 - L1MB5 LINE L1 -93 6091 5923 255 306 207 9 chr6 61950154 61950265 -127329289 - L2 LINE L2 -216 3056 2924 620 133 9 26 chr6 61950297 61950410 -127329144 - AluSg/x SINE Alu -10 300 190 759 136 15 15 chr6 61950514 61950646 -127328908 - AluSq/x SINE Alu -175 138 7 475 296 56 110 chr6 61950915 61951203 -127328351 + LTR16B LTR ERVL 28 283 -181 1185 63 23 6 chr6 61951203 61951378 -127328176 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 475 296 56 110 chr6 61951378 61951551 -127328003 + LTR16B LTR ERVL 283 464 0 340 297 125 86 chr6 61953083 61953386 -127326168 - L2 LINE L2 -489 2825 2511 307 289 50 8 chr6 61953521 61953642 -127325912 + MER94 DNA DNA 5 130 -4 658 323 121 44 chr6 61953716 61954449 -127325105 + L2 LINE L2 1896 2685 -629 313 301 0 82 chr6 61954871 61955017 -127324537 + L2 LINE L2 3180 3313 0 237 315 34 22 chr6 61955093 61955182 -127324372 + MIR SINE MIR 59 148 -114 262 304 0 0 chr6 61956308 61956387 -127323167 + GA-rich Low_complexity Low_complexity 2 80 0 378 309 66 11 chr6 61956795 61956863 -127322691 - L3b LINE CR1 -66 1517 1454 1572 108 5 0 chr6 61956863 61957075 -127322479 + AluSp SINE Alu 87 299 -14 378 309 66 11 chr6 61957075 61957187 -127322367 - L3b LINE CR1 -129 1454 1327 188 98 0 24 chr6 61959554 61959595 -127319959 + (TC)n Simple_repeat Simple_repeat 1 40 0 1105 309 40 31 chr6 61959627 61960051 -127319503 + LTR16A LTR ERVL 18 445 -5 222 62 0 0 chr6 61960239 61960271 -127319283 + (CA)n Simple_repeat Simple_repeat 1 32 0 481 279 107 38 chr6 61960300 61960748 -127318806 - L1M4 LINE L1 -768 5378 4900 267 296 129 38 chr6 61961153 61961285 -127318269 + MIR SINE MIR 50 193 -69 26 0 0 0 chr6 61961336 61961362 -127318192 + AT_rich Low_complexity Low_complexity 1 26 0 1377 132 0 9 chr6 61961496 61961740 -127317814 - AluSg/x SINE Alu 0 313 72 1452 122 101 82 chr6 61961803 61962171 -127317383 - THE1C LTR MaLR 0 375 1 2141 132 3 0 chr6 61962278 61962582 -127316972 - AluSg SINE Alu -5 305 1 446 327 30 5 chr6 61962619 61962821 -127316733 - HAL1 LINE L1 -699 1808 1602 547 280 77 79 chr6 61962824 61963227 -127316327 - MLT1I LTR MaLR -4 405 4 418 347 96 5 chr6 61963518 61963737 -127315817 + L2 LINE L2 2472 2710 -604 4018 228 7 30 chr6 61963739 61964807 -127314747 + L1PA16 LINE L1 2912 3954 -2192 1831 233 56 66 chr6 61964811 61965369 -127314185 + MLT2B3 LTR ERVL 3 554 0 5436 187 23 16 chr6 61965369 61967557 -127311997 + L1PA16 LINE L1 3952 6157 -9 444 37 0 0 chr6 61967558 61967612 -127311942 + (CA)n Simple_repeat Simple_repeat 2 55 0 324 348 168 20 chr6 61967628 61968119 -127311435 + L2 LINE L2 2742 3313 0 1646 196 0 3 chr6 61968254 61968555 -127310999 - AluJo SINE Alu -10 302 3 22 80 0 0 chr6 61968596 61968646 -127310908 + AT_rich Low_complexity Low_complexity 1 50 0 2518 62 0 0 chr6 61969082 61969386 -127310168 - AluY SINE Alu -7 304 1 2411 257 47 42 chr6 61969415 61971097 -127308457 - L1ME1 LINE L1 -7 6159 4464 803 284 50 0 chr6 61971094 61971316 -127308238 - L1ME LINE L1 -462 5704 5472 * 543 280 55 39 chr6 61971333 61971694 -127307860 - L1ME1 LINE L1 -1712 4434 4068 23 92 0 0 chr6 61971783 61971848 -127307706 + AT_rich Low_complexity Low_complexity 1 65 0 817 252 105 44 chr6 61971887 61972315 -127307239 - L1ME4a LINE L1 -177 5944 5491 698 259 32 0 chr6 61972569 61972789 -127306765 - L1ME1 LINE L1 -2178 3968 3742 5231 191 19 13 chr6 61972961 61974938 -127304616 - L1MA9 LINE L1 -148 6164 4175 1130 208 7 15 chr6 61974933 61975202 -127304352 - L1MA9 LINE L1 -2449 3697 3431 * 1645 205 0 0 chr6 61975241 61975538 -127304016 + AluJb SINE Alu 6 302 -10 247 335 32 38 chr6 61975567 61975725 -127303829 - L1ME3A LINE L1 -52 6118 5962 1282 266 80 55 chr6 61975893 61976571 -127302983 - L1MC5 LINE L1 -522 7439 6745 361 320 94 27 chr6 61976951 61977207 -127302347 - HAL1b LINE L1 -687 661 389 4956 141 23 23 chr6 61977224 61978305 -127301249 + L1PA16 LINE L1 4397 5492 -674 225 0 0 0 chr6 61978305 61978330 -127301224 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4956 141 23 23 chr6 61978330 61978997 -127300557 + L1PA16 LINE L1 5491 6157 -9 24 0 0 0 chr6 61979367 61979391 -127300163 + AT_rich Low_complexity Low_complexity 1 24 0 9294 92 11 13 chr6 61980217 61981670 -127297884 + L1PA7 LINE L1 4027 5482 -672 2426 84 0 3 chr6 61981670 61981981 -127297573 + AluY SINE Alu 1 310 -1 9294 92 11 13 chr6 61981981 61982646 -127296908 + L1PA7 LINE L1 5482 6147 -7 2129 140 0 0 chr6 61982810 61983118 -127296436 + AluSg1 SINE Alu 1 308 -1 23 0 0 0 chr6 61985121 61985144 -127294410 + AT_rich Low_complexity Low_complexity 1 23 0 1287 218 49 3 chr6 61985144 61985429 -127294125 + AluJo SINE Alu 1 298 -14 29 47 0 0 chr6 61986177 61986220 -127293334 + AT_rich Low_complexity Low_complexity 1 43 0 320 265 20 0 chr6 61987640 61987738 -127291816 - MER103 DNA DNA -64 102 3 514 271 136 6 chr6 61987862 61988039 -127291515 - MER58C DNA MER1_type -15 200 1 5136 132 40 19 chr6 61988249 61989007 -127290547 + L1PA15 LINE L1 4964 5751 -414 2044 141 0 13 chr6 61989007 61989312 -127290242 + AluSg SINE Alu 4 304 -6 5136 132 40 19 chr6 61989312 61989735 -127289819 + L1PA15 LINE L1 5751 6164 -1 231 123 82 0 chr6 61990036 61990109 -127289445 + (TA)n Simple_repeat Simple_repeat 2 80 0 26 0 0 0 chr6 61991943 61991969 -127287585 + AT_rich Low_complexity Low_complexity 1 26 0 768 132 7 7 chr6 61992981 61993117 -127286437 + L1PA15 LINE L1 6030 6165 0 2676 94 8 6 chr6 61994164 61994527 -127285027 - THE1B LTR MaLR 0 364 1 31 26 0 0 chr6 61994832 61994870 -127284684 + AT_rich Low_complexity Low_complexity 1 38 0 653 161 9 0 chr6 61995840 61995952 -127283602 + L1PA13 LINE L1 6034 6146 -17 234 0 0 0 chr6 61998219 61998245 -127281309 + (CA)n Simple_repeat Simple_repeat 2 27 0 231 114 0 0 chr6 61998608 61998643 -127280911 + (TTC)n Simple_repeat Simple_repeat 2 36 0 360 357 40 22 chr6 61999627 61999854 -127279700 - MIR SINE MIR -27 235 5 231 307 204 0 chr6 62001197 62001373 -127278181 + MIR SINE MIR 35 246 -16 498 46 0 0 chr6 62001516 62001581 -127277973 + (TG)n Simple_repeat Simple_repeat 2 66 0 534 215 37 0 chr6 62002442 62002549 -127277005 + MER5A DNA MER1_type 79 189 0 288 0 0 0 chr6 62002937 62002969 -127276585 + (TA)n Simple_repeat Simple_repeat 2 33 0 5002 135 18 54 chr6 62003560 62003982 -127275572 + L1MC1 LINE L1 5426 5862 -471 1502 183 0 66 chr6 62003982 62004328 -127275226 + AluJb SINE Alu 3 328 0 5002 135 18 54 chr6 62004328 62004846 -127274708 + L1MC1 LINE L1 5862 6333 0 25 0 0 0 chr6 62004909 62004934 -127274620 + AT_rich Low_complexity Low_complexity 1 25 0 1068 51 0 0 chr6 62004934 62005071 -127274483 - L1PA4 LINE L1 -3 6152 6016 316 26 0 0 chr6 62005071 62005109 -127274445 + L1P LINE L1 2841 2878 -3268 290 351 31 21 chr6 62005550 62005741 -127273813 + MIR3 SINE MIR 3 195 -13 386 347 16 0 chr6 62005778 62005899 -127273655 - MIR SINE MIR -124 138 16 21 0 0 0 chr6 62006054 62006075 -127273479 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 62007247 62007269 -127272285 + AT_rich Low_complexity Low_complexity 1 22 0 196 51 128 0 chr6 62007755 62007794 -127271760 - MIR SINE MIR -154 108 65 2187 41 41 24 chr6 62009888 62010179 -127269375 - AluY SINE Alu -14 297 2 288 250 97 73 chr6 62012157 62012281 -127267273 + L2 LINE L2 3182 3308 -5 453 337 80 20 chr6 62012522 62012721 -127266833 + MIR SINE MIR 20 230 -32 24 53 0 0 chr6 62012805 62012843 -127266711 + AT_rich Low_complexity Low_complexity 1 38 0 378 257 11 81 chr6 62013906 62014086 -127265468 - MIR SINE MIR -50 158 30 206 324 199 23 chr6 62014214 62014430 -127265124 - MIR SINE MIR -7 255 2 26 30 0 0 chr6 62014840 62014873 -127264681 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr6 62014923 62014952 -127264602 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 62015289 62015312 -127264242 + AT_rich Low_complexity Low_complexity 1 23 0 42 20 0 0 chr6 62015610 62015659 -127263895 + AT_rich Low_complexity Low_complexity 1 49 0 257 252 114 30 chr6 62016794 62016925 -127262629 + MLT1L LTR MaLR 466 607 -8 193 351 52 0 chr6 62017905 62017982 -127261572 - L2 LINE L2 0 3272 3192 255 61 0 0 chr6 62018511 62018544 -127261010 + (TG)n Simple_repeat Simple_repeat 1 33 0 431 304 47 7 chr6 62020707 62020855 -127258699 - MIR SINE MIR 0 262 109 350 238 94 56 chr6 62021295 62021455 -127258099 + MIR SINE MIR 97 262 0 2333 51 13 35 chr6 62022093 62022406 -127257148 - AluY SINE Alu 0 311 1 2591 295 58 13 chr6 62022757 62023673 -127255881 + L2 LINE L2 1575 2531 -783 26 0 0 0 chr6 62023839 62023865 -127255689 + AT_rich Low_complexity Low_complexity 1 26 0 231 345 149 38 chr6 62024602 62025124 -127254430 - L2 LINE L2 -639 2675 2096 430 213 0 0 chr6 62025133 62025213 -127254341 - FLAM_A SINE Alu -59 83 4 341 262 68 10 chr6 62026110 62026213 -127253341 - MIR SINE MIR -31 231 123 283 366 29 80 chr6 62027153 62027509 -127252045 - L2 LINE L2 0 3272 2936 804 290 23 5 chr6 62027509 62027723 -127251831 + MIR SINE MIR 3 220 -42 365 209 86 9 chr6 62028924 62029029 -127250525 + MIR SINE MIR 96 208 -54 30 0 0 0 chr6 62029200 62029230 -127250324 + AT_rich Low_complexity Low_complexity 1 30 0 627 313 50 20 chr6 62029306 62029606 -127249948 + MLT1I LTR MaLR 99 407 -2 498 301 56 46 chr6 62029669 62029865 -127249689 - MIR SINE MIR -62 200 3 342 247 107 84 chr6 62031219 62031397 -127248157 + L3b LINE CR1 1262 1443 -140 275 224 122 30 chr6 62031406 62031583 -127247971 - MIR3 SINE MIR -3 205 12 * 370 303 130 6 chr6 62031517 62031679 -127247875 + MIR SINE MIR 8 189 -73 427 245 126 0 chr6 62032080 62032239 -127247315 - MER69 DNA AcHobo -1 2525 2347 455 229 174 0 chr6 62032240 62032384 -127247170 - MER69 DNA AcHobo -473 753 585 234 308 0 11 chr6 62032418 62032509 -127247045 + L1MC4 LINE L1 6614 6703 -1339 920 278 82 68 chr6 62032537 62033023 -127246531 - MER69 DNA AcHobo -721 505 13 297 289 89 0 chr6 62033385 62033520 -127246034 + MARNA DNA Mariner 111 257 -329 24 67 0 0 chr6 62033627 62033672 -127245882 + AT_rich Low_complexity Low_complexity 1 45 0 247 260 84 52 chr6 62033706 62033860 -127245694 - L1ME3A LINE L1 -89 6081 5923 1860 242 56 80 chr6 62033932 62034919 -127244635 - L1MC5 LINE L1 -433 7528 6555 274 277 55 9 chr6 62035335 62035449 -127244105 - L1M4c LINE L1 -768 1417 471 269 51 26 0 chr6 62035455 62035494 -127244060 + (TA)n Simple_repeat Simple_repeat 2 41 0 400 313 34 68 chr6 62035584 62035878 -127243676 - HAL1b LINE L1 -981 367 84 261 0 0 0 chr6 62038567 62038596 -127240958 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 588 243 89 37 chr6 62039497 62039711 -127239843 + LTR16A1 LTR ERVL 231 455 -2 444 246 199 0 chr6 62041689 62041860 -127237694 - L2 LINE L2 -190 3123 2919 23 54 0 0 chr6 62045185 62045222 -127234332 + AT_rich Low_complexity Low_complexity 1 37 0 246 359 84 12 chr6 62046289 62046456 -127233098 + MIR SINE MIR 9 187 -75 279 0 0 0 chr6 62046954 62046985 -127232569 + (A)n Simple_repeat Simple_repeat 1 31 0 252 143 13 26 chr6 62049370 62049447 -127230107 + (TA)n Simple_repeat Simple_repeat 2 77 0 221 0 35 0 chr6 62049447 62049476 -127230078 + (CA)n Simple_repeat Simple_repeat 2 31 0 288 77 0 0 chr6 62050895 62050934 -127228620 + (CA)n Simple_repeat Simple_repeat 2 40 0 26 30 0 0 chr6 62051882 62051915 -127227639 + AT_rich Low_complexity Low_complexity 1 33 0 494 298 120 43 chr6 62051963 62052000 -127227554 - MER58A DNA MER1_type -2196 224 191 14528 143 7 25 chr6 62052000 62054462 -127225092 - Tigger1 DNA MER2_type 0 2418 2 494 298 120 43 chr6 62054462 62054632 -127224922 - MER58A DNA MER1_type -2229 191 1 219 329 61 24 chr6 62054645 62054727 -127224827 + MIR SINE MIR 47 131 -131 * 284 289 86 20 chr6 62054689 62054841 -127224713 - MIR SINE MIR -48 214 53 1008 281 35 29 chr6 62055201 62055664 -127223890 + MLT2B1 LTR ERVL 1 519 -1 886 248 22 13 chr6 62056044 62056274 -127223280 + MLT1C LTR MaLR 234 465 -2 21 71 0 0 chr6 62057125 62057167 -127222387 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr6 62057550 62057572 -127221982 + AT_rich Low_complexity Low_complexity 1 22 0 182 200 22 22 chr6 62058886 62058931 -127220623 + L2 LINE L2 3261 3305 -8 762 263 64 24 chr6 62060801 62061052 -127218502 - MIR SINE MIR 0 262 2 7736 148 14 8 chr6 62061232 62062565 -127216989 - L1PA11 LINE L1 -833 5313 3972 6078 97 11 9 chr6 62062564 62063439 -127216115 + L1PA11 LINE L1 5297 6173 -1 * 265 371 21 21 chr6 62063492 62063635 -127215919 + MIR3 SINE MIR 55 197 -11 258 441 0 0 chr6 62063839 62063950 -127215604 + L2 LINE L2 3137 3247 -25 971 158 29 102 chr6 62064270 62064516 -127215038 + AluJb SINE Alu 11 238 -74 428 322 66 63 chr6 62064530 62064955 -127214599 + MLT1H LTR MaLR 122 547 -2 275 0 29 0 chr6 62066127 62066162 -127213392 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 57 0 0 chr6 62067691 62067726 -127211828 + AT_rich Low_complexity Low_complexity 1 35 0 327 155 172 0 chr6 62068294 62068352 -127211202 - MER58A DNA MER1_type -34 73 6 529 227 17 0 chr6 62068352 62068471 -127211083 - MER96B DNA MER1_type? -296 121 1 264 122 0 0 chr6 62068894 62068935 -127210619 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2064 103 0 7 chr6 62069075 62069367 -127210187 + AluSg SINE Alu 1 290 -20 212 318 82 0 chr6 62070831 62070916 -127208638 - MIR SINE MIR -68 194 103 243 401 20 14 chr6 62071023 62071170 -127208384 - MIR SINE MIR -113 149 2 1589 273 61 40 chr6 62071347 62072183 -127207371 + L2 LINE L2 2432 3285 -28 1191 230 11 43 chr6 62072196 62072544 -127207010 + LTR52 LTR ERVL 13 349 -72 250 170 0 0 chr6 62072545 62072592 -127206962 - L1 LINE L1 -925 5221 5175 874 218 57 31 chr6 62074150 62074250 -127205304 + MIR SINE MIR 3 99 -163 2420 113 16 14 chr6 62074250 62074613 -127204941 - THE1B LTR MaLR 0 364 1 874 218 57 31 chr6 62074613 62074741 -127204813 + MIR SINE MIR 99 237 -25 2370 162 30 40 chr6 62075607 62075902 -127203652 + L1 LINE L1 4114 4403 -1743 495 0 0 0 chr6 62075902 62075957 -127203597 + (TAAAA)n Simple_repeat Simple_repeat 3 57 0 2370 162 30 40 chr6 62075957 62076187 -127203367 + L1 LINE L1 4403 4634 -1512 25 0 0 0 chr6 62076190 62076215 -127203339 + AT_rich Low_complexity Low_complexity 1 25 0 297 336 29 0 chr6 62076344 62076448 -127203106 + MIR SINE MIR 28 134 -128 565 153 0 0 chr6 62077289 62077391 -127202163 - L1MA2 LINE L1 -285 5878 5777 999 260 30 17 chr6 62078555 62079096 -127200458 + MER97c DNA MER1_type? 1 640 -450 265 184 0 0 chr6 62079127 62079176 -127200378 - L1MC4 LINE L1 -1334 6708 6660 6614 140 34 6 chr6 62079354 62080967 -127198587 - L1MA3 LINE L1 -10 6295 4627 22 0 0 0 chr6 62080993 62081015 -127198539 + AT_rich Low_complexity Low_complexity 1 22 0 464 309 77 32 chr6 62081223 62081469 -127198085 - MIR SINE MIR -4 258 2 21 0 0 0 chr6 62083636 62083657 -127195897 + AT_rich Low_complexity Low_complexity 1 21 0 51 0 0 0 chr6 62083758 62083809 -127195745 + AT_rich Low_complexity Low_complexity 1 51 0 443 278 88 1 chr6 62086117 62086316 -127193238 - L1ME3A LINE L1 -292 5872 5659 840 274 71 86 chr6 62086497 62086917 -127192637 + MLT1J1 LTR MaLR 9 422 -24 229 374 68 0 chr6 62086925 62087072 -127192482 + MIR SINE MIR 96 252 -10 204 287 32 43 chr6 62087079 62087173 -127192381 - MIR3 SINE MIR -7 201 109 798 181 5 102 chr6 62088516 62088721 -127190833 - MER67D LTR ERV1 -329 185 1 29 28 0 0 chr6 62090036 62090072 -127189482 + AT_rich Low_complexity Low_complexity 1 36 0 196 237 0 0 chr6 62090072 62090110 -127189444 + MIR SINE MIR 102 139 -123 23 54 0 0 chr6 62090673 62090710 -127188844 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 62092369 62092390 -127187164 + AT_rich Low_complexity Low_complexity 1 21 0 351 253 12 0 chr6 62092459 62092542 -127187012 + L2 LINE L2 3226 3309 -4 1716 158 3 7 chr6 62092649 62092934 -127186620 - AluJb SINE Alu -20 292 9 21 57 0 0 chr6 62094818 62094853 -127184701 + AT_rich Low_complexity Low_complexity 1 35 0 186 275 50 38 chr6 62094970 62095050 -127184504 - MIR SINE MIR -44 218 138 2246 96 0 3 chr6 62095726 62096027 -127183527 - AluSq SINE Alu -13 300 1 2751 200 17 91 chr6 62096244 62097005 -127182549 + L1M3e LINE L1 1 705 -6325 323 343 7 15 chr6 62097133 62097270 -127182284 + L1ME3A LINE L1 5205 5340 -806 252 264 3 0 chr6 62097300 62097388 -127182166 + L1P2 LINE L1 5387 5475 -687 353 278 218 21 chr6 62097392 62097626 -127181928 + L1ME3A LINE L1 5644 5923 -247 351 0 0 0 chr6 62097630 62097669 -127181885 + (CA)n Simple_repeat Simple_repeat 2 40 0 1675 229 6 0 chr6 62097670 62098028 -127181526 - MER47A DNA MER2_type -4 362 3 1434 161 21 8 chr6 62098067 62098303 -127181251 + Tigger3(Golem) DNA MER2_type 2791 3029 0 186 260 0 0 chr6 62098303 62098376 -127181178 + (TA)n Simple_repeat Simple_repeat 1 73 0 276 323 48 18 chr6 62098469 62098636 -127180918 + L1ME3A LINE L1 5965 6136 -34 183 162 0 0 chr6 62098745 62098782 -127180772 + (TTA)n Simple_repeat Simple_repeat 2 38 0 23 54 0 0 chr6 62098960 62098997 -127180557 + AT_rich Low_complexity Low_complexity 1 37 0 36 23 0 0 chr6 62099176 62099219 -127180335 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr6 62100418 62100444 -127179110 + AT_rich Low_complexity Low_complexity 1 26 0 186 43 0 0 chr6 62100949 62100972 -127178582 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 509 257 135 65 chr6 62101765 62102181 -127177373 - L1ME LINE L1 -442 5720 5276 760 309 68 15 chr6 62102185 62102718 -127176836 + L1M4 LINE L1 3935 4515 -1631 1052 70 0 14 chr6 62103786 62103929 -127175625 + L1PA7 LINE L1 6014 6154 0 26 30 0 0 chr6 62104040 62104073 -127175481 + AT_rich Low_complexity Low_complexity 1 33 0 863 141 0 0 chr6 62104200 62104335 -127175219 - THE1C LTR MaLR -240 135 1 897 261 55 45 chr6 62104382 62104804 -127174750 + L1MC4 LINE L1 7480 7905 -137 202 308 0 0 chr6 62104814 62104879 -127174675 + (TA)n Simple_repeat Simple_repeat 2 66 0 252 250 48 0 chr6 62104896 62105000 -127174554 + L1MC4 LINE L1 7933 8041 -1 407 329 144 14 chr6 62105054 62105289 -127174265 + L1M4 LINE L1 2910 3113 -3033 6695 64 23 0 chr6 62105289 62106765 -127172789 + L1PA7 LINE L1 4653 6153 -1 407 329 144 14 chr6 62106765 62106891 -127172663 + L1M4 LINE L1 3113 3318 -2828 1161 196 94 5 chr6 62106909 62107271 -127172283 - MLT1D LTR MaLR -2 503 31 13049 231 33 12 chr6 62107556 62112822 -127166732 - L1PA16 LINE L1 -9 7595 2187 1924 133 0 4 chr6 62113610 62113888 -127165666 - AluSx SINE Alu -35 277 1 12708 178 44 19 chr6 62113888 62116527 -127163027 - L1 LINE L1 -1226 6339 3587 1736 90 84 74 chr6 62116527 62116837 -127162717 - AluSq SINE Alu 0 313 1 12708 178 44 19 chr6 62116837 62117247 -127162307 - L1 LINE L1 -3978 3587 3189 8627 193 84 14 chr6 62117240 62118969 -127160585 - L1 LINE L1 -5704 1861 13 * 410 228 40 0 chr6 62118974 62119075 -127160479 - L1M4 LINE L1 -1396 4750 4646 * 2038 269 30 6 chr6 62119069 62119761 -127159793 - L1M4 LINE L1 -3158 2988 2280 213 322 16 58 chr6 62120166 62120287 -127159267 + MIR3 SINE MIR 93 208 0 832 210 42 0 chr6 62120345 62120512 -127159042 + MER5A DNA MER1_type 16 189 0 2231 115 0 10 chr6 62120565 62120879 -127158675 - AluSq SINE Alu -2 311 1 2257 113 0 0 chr6 62121081 62121383 -127158171 + AluSg SINE Alu 1 302 -8 21 82 0 0 chr6 62121430 62121479 -127158075 + AT_rich Low_complexity Low_complexity 1 49 0 612 209 92 76 chr6 62122120 62122369 -127157185 + L1MD3 LINE L1 7732 7984 -11 736 242 51 33 chr6 62122501 62122716 -127156838 + MER20 DNA MER1_type 1 219 0 28 0 0 0 chr6 62123493 62123521 -127156033 + AT_rich Low_complexity Low_complexity 1 28 0 689 309 77 5 chr6 62123854 62124061 -127155493 - MER58A DNA MER1_type -1 223 2 1002 204 27 32 chr6 62126280 62126500 -127153054 - MER20 DNA MER1_type 0 219 1 22 0 0 0 chr6 62126622 62126644 -127152910 + AT_rich Low_complexity Low_complexity 1 22 0 489 265 23 73 chr6 62128066 62128285 -127151269 - L2 LINE L2 0 3313 3106 1032 313 135 23 chr6 62128370 62128926 -127150628 - L2 LINE L2 -389 2925 2308 707 293 53 28 chr6 62128932 62129253 -127150301 - L2 LINE L2 -1683 1631 1303 225 188 14 29 chr6 62129347 62129416 -127150138 - MER116 DNA Mariner -5 75 8 300 359 77 32 chr6 62129418 62129730 -127149824 + L2 LINE L2 1661 1986 -1328 196 337 11 0 chr6 62130766 62130858 -127148696 + MIR SINE MIR 168 260 -2 201 320 64 0 chr6 62131060 62131138 -127148416 + L2 LINE L2 3186 3268 -4 324 271 135 0 chr6 62131270 62131403 -127148151 - MIR SINE MIR -28 234 84 203 340 66 0 chr6 62131508 62131614 -127147940 - L2 LINE L2 -1 3312 3200 214 207 17 0 chr6 62132681 62132739 -127146815 + (TA)n Simple_repeat Simple_repeat 1 59 0 320 213 53 43 chr6 62133275 62133369 -127146185 - L1MC4 LINE L1 -1337 6705 6611 2141 62 3 3 chr6 62134931 62135220 -127144334 - L1PA4 LINE L1 -3 6152 5864 2281 81 3 0 chr6 62136614 62136910 -127142644 + AluY SINE Alu 1 297 -14 2098 123 0 0 chr6 62137417 62137717 -127141837 - AluSc SINE Alu -9 300 1 269 311 22 0 chr6 62137862 62137952 -127141602 + L2 LINE L2 3219 3310 -3 215 100 0 25 chr6 62137969 62138009 -127141545 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 319 294 64 0 chr6 62138082 62138191 -127141363 + MIR3 SINE MIR 92 207 -1 282 301 72 36 chr6 62138216 62138299 -127141255 + MER58 DNA MER1_type 1 86 -2334 322 196 46 29 chr6 62138367 62138540 -127141014 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 408 98 43 71 chr6 62138642 62138826 -127140728 + (TA)n Simple_repeat Simple_repeat 2 180 0 3732 154 9 11 chr6 62138860 62139607 -127139947 - L1P5 LINE L1 -361 5790 5045 2174 115 7 0 chr6 62139607 62139903 -127139651 - AluSx SINE Alu -14 298 1 3732 154 9 11 chr6 62139903 62140156 -127139398 - L1P5 LINE L1 -1106 5045 4793 243 236 125 0 chr6 62140159 62140231 -127139323 + MER58 DNA MER1_type 2339 2419 -1 697 285 41 0 chr6 62140262 62140434 -127139120 + MER5A DNA MER1_type 11 189 0 1321 190 73 152 chr6 62141053 62141600 -127137954 + MER67D LTR ERV1 2 505 -9 228 384 12 0 chr6 62141851 62141937 -127137617 + L2 LINE L2 3227 3313 0 3924 169 16 11 chr6 62142401 62143163 -127136391 - L1MA6 LINE L1 0 6300 5535 4065 249 71 36 chr6 62143517 62146195 -127133359 - L1ME LINE L1 -710 5736 3154 2180 64 0 7 chr6 62146195 62146476 -127133078 - AluY SINE Alu -6 305 27 4065 249 71 36 chr6 62146476 62146612 -127132942 - L1ME LINE L1 -3292 3154 3024 701 229 0 0 chr6 62146612 62146743 -127132811 - FLAM_A SINE Alu -1 132 2 4065 249 71 36 chr6 62146743 62146862 -127132692 - L1ME LINE L1 -3422 3024 2495 299 217 25 33 chr6 62146865 62146985 -127132569 - L1ME LINE L1 -3981 2445 2327 5623 166 30 18 chr6 62147004 62147325 -127132229 + HSMAR2 DNA Mariner 249 565 -737 1933 157 3 0 chr6 62147325 62147624 -127131930 + AluSx SINE Alu 1 300 -12 5623 166 30 18 chr6 62147624 62148334 -127131220 + HSMAR2 DNA Mariner 565 1292 -10 202 256 158 24 chr6 62148783 62148865 -127130689 - MIR3 SINE MIR -5 203 111 821 234 16 16 chr6 62148931 62149119 -127130435 + MER5A DNA MER1_type 2 189 0 21 0 0 0 chr6 62149594 62149615 -127129939 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr6 62149790 62149834 -127129720 + AT_rich Low_complexity Low_complexity 1 44 0 1610 118 0 0 chr6 62150284 62150505 -127129049 + AluSx SINE Alu 1 221 -91 19496 185 24 11 chr6 62150505 62153041 -127126513 - L1 LINE L1 -3205 4360 1743 2142 135 0 0 chr6 62153041 62153353 -127126201 + AluSx SINE Alu 1 312 0 19496 185 24 11 chr6 62153353 62155106 -127124448 - L1 LINE L1 -5822 1743 14 181 286 18 36 chr6 62155144 62155200 -127124354 + MIR3 SINE MIR 105 159 -49 1858 194 23 5 chr6 62155251 62155648 -127123906 - L1MC1 LINE L1 0 6333 5930 646 245 71 103 chr6 62155729 62156080 -127123474 - MER57A LTR ERV1 0 403 64 1134 278 30 48 chr6 62156120 62156559 -127122995 - MER57A-int LTR ERV1 -392 7145 6715 3237 235 78 73 chr6 62156621 62157998 -127121556 - MER57A-int LTR ERV1 -1494 3442 2581 2763 79 0 0 chr6 62157998 62158364 -127121190 + L1PA8 LINE L1 5805 6170 -2 3237 235 78 73 chr6 62158364 62159036 -127120518 - MER57A-int LTR ERV1 -2355 2581 1914 284 215 15 0 chr6 62159099 62159164 -127120390 - MER34 LTR ERV1 0 542 477 395 195 13 0 chr6 62159190 62159267 -127120287 - MER34 LTR ERV1 -332 210 133 964 215 95 38 chr6 62159415 62159841 -127119713 - MER57A-int LTR ERV1 -2964 1907 1044 2227 118 0 0 chr6 62159944 62160249 -127119305 + AluSg SINE Alu 4 308 -2 682 266 24 39 chr6 62160583 62160846 -127118708 - MER57A-int LTR ERV1 -7238 299 3 496 253 109 99 chr6 62160854 62161249 -127118305 - MER57A LTR ERV1 -4 399 1 255 93 0 0 chr6 62161441 62161484 -127118070 + (CA)n Simple_repeat Simple_repeat 2 44 0 442 258 12 90 chr6 62162292 62162459 -127117095 + MIR SINE MIR 2 155 -107 459 0 0 0 chr6 62163045 62163096 -127116458 + (TG)n Simple_repeat Simple_repeat 2 52 0 437 0 19 0 chr6 62163394 62163447 -127116107 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 21 36 0 0 chr6 62163605 62163633 -127115921 + AT_rich Low_complexity Low_complexity 1 28 0 240 59 0 0 chr6 62165453 62165487 -127114067 + (A)n Simple_repeat Simple_repeat 1 34 0 254 267 17 0 chr6 62165524 62165584 -127113970 + MER5A DNA MER1_type 128 188 -1 182 146 0 24 chr6 62165629 62165670 -127113884 + (TTCTC)n Simple_repeat Simple_repeat 5 44 0 276 323 213 18 chr6 62166140 62166453 -127113101 + L2 LINE L2 2580 2971 -342 266 293 88 33 chr6 62166529 62166710 -127112844 + L2 LINE L2 3098 3288 -25 203 254 99 0 chr6 62166751 62166822 -127112732 - MIR SINE MIR -60 202 125 246 253 36 12 chr6 62167597 62167680 -127111874 - MIR SINE MIR -101 161 77 251 288 47 82 chr6 62167914 62168084 -127111470 + MER5A DNA MER1_type 15 189 0 251 346 10 10 chr6 62168268 62168369 -127111185 + MIR SINE MIR 7 107 -155 649 176 206 0 chr6 62168384 62168520 -127111034 - AluSg/x SINE Alu -12 300 137 293 336 41 20 chr6 62168523 62168669 -127110885 + MIR SINE MIR 111 259 -3 244 105 0 0 chr6 62169019 62169057 -127110497 - L1PA13 LINE L1 -11 6152 6115 189 0 0 0 chr6 62169260 62169281 -127110273 + (TAA)n Simple_repeat Simple_repeat 2 22 0 24 0 0 0 chr6 62169316 62169340 -127110214 + AT_rich Low_complexity Low_complexity 1 24 0 249 33 0 0 chr6 62169866 62169896 -127109658 + (TTA)n Simple_repeat Simple_repeat 1 30 0 1957 213 83 12 chr6 62170478 62170958 -127108596 + L1MA3 LINE L1 5792 6305 0 622 319 38 21 chr6 62171082 62171320 -127108234 + MIR SINE MIR 11 252 -10 271 240 10 80 chr6 62172485 62172585 -127106969 + MER105 DNA DNA 43 135 -69 27 29 0 0 chr6 62173072 62173106 -127106448 + AT_rich Low_complexity Low_complexity 1 34 0 554 313 88 14 chr6 62173688 62173905 -127105649 + MIR SINE MIR 16 248 -14 23 0 0 0 chr6 62175206 62175229 -127104325 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr6 62175884 62175915 -127103639 + AT_rich Low_complexity Low_complexity 1 31 0 24 85 0 0 chr6 62176146 62176205 -127103349 + AT_rich Low_complexity Low_complexity 1 59 0 368 299 25 61 chr6 62176692 62176889 -127102665 + MLT1G LTR MaLR 401 590 0 503 210 31 49 chr6 62176962 62177124 -127102430 + L1ME3 LINE L1 14 172 -6370 254 272 153 78 chr6 62177483 62178335 -127101219 + HAL1 LINE L1 894 1809 -698 251 272 0 0 chr6 62178461 62178542 -127101012 + A-rich Low_complexity Low_complexity 1 81 0 25 0 0 0 chr6 62180120 62180145 -127099409 + AT_rich Low_complexity Low_complexity 1 25 0 313 228 140 26 chr6 62180245 62180359 -127099195 + L1ME3 LINE L1 3398 3524 -3120 329 247 144 34 chr6 62180363 62180654 -127098900 + L1ME3 LINE L1 3536 3858 -2786 963 238 76 0 chr6 62180659 62180936 -127098618 - L1M4 LINE L1 -2413 3733 3436 796 304 123 45 chr6 62181000 62182218 -127097336 + L1ME3 LINE L1 5293 6614 -46 24 67 0 0 chr6 62182820 62182865 -127096689 + AT_rich Low_complexity Low_complexity 1 45 0 26 64 0 0 chr6 62183201 62183248 -127096306 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr6 62183678 62183700 -127095854 + AT_rich Low_complexity Low_complexity 1 22 0 2397 178 33 9 chr6 62184583 62185033 -127094521 - LOR1b LTR ERV1 0 461 1 3982 197 35 1 chr6 62185078 62185823 -127093731 + Tigger7 DNA MER2_type 1 770 -1717 1502 168 144 25 chr6 62185826 62186153 -127093401 + Tigger7 DNA MER2_type 2122 2487 0 186 235 98 0 chr6 62186650 62186701 -127092853 + MIR SINE MIR 84 139 -123 2429 305 91 50 chr6 62186902 62188291 -127091263 - L2 LINE L2 -732 2582 1136 203 182 23 0 chr6 62188454 62188498 -127091056 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 288 81 0 0 chr6 62188645 62188682 -127090872 - U2 snRNA snRNA -151 37 1 1486 199 60 23 chr6 62188774 62189121 -127090433 - MLT1B LTR MaLR -1 389 30 215 313 16 16 chr6 62189191 62189255 -127090299 - L2 LINE L2 -215 3057 2994 1007 261 64 25 chr6 62189334 62189789 -127089765 - MER77 LTR ERV1 -5 600 56 241 200 27 27 chr6 62190047 62190122 -127089432 + (TA)n Simple_repeat Simple_repeat 1 75 0 216 224 17 0 chr6 62192711 62192769 -127086785 + (TA)n Simple_repeat Simple_repeat 1 59 0 1718 164 143 13 chr6 62243248 62243627 -127035927 + MSTA LTR MaLR 1 428 0 708 290 57 0 chr6 62245705 62245898 -127033656 + MLT2E LTR ERVL 1 204 -424 454 223 27 0 chr6 62245900 62246012 -127033542 + HERVL LTR ERVL 4274 4388 -1266 1087 140 0 0 chr6 62246191 62246348 -127033206 - FRAM SINE Alu -26 150 1 3101 202 85 33 chr6 62246372 62247324 -127032230 + L1MB8 LINE L1 5171 6176 -2 1846 224 72 80 chr6 62247492 62248121 -127031433 - MER21B LTR ERV1 -75 788 165 186 233 67 33 chr6 62248794 62248854 -127030700 - L3 LINE CR1 -200 1377 1316 21 0 0 0 chr6 62249019 62249040 -127030514 + AT_rich Low_complexity Low_complexity 1 21 0 204 111 0 0 chr6 62249741 62249777 -127029777 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chr6 62249965 62249994 -127029560 + AT_rich Low_complexity Low_complexity 1 29 0 3001 74 22 17 chr6 62250330 62250747 -127028807 - L1PA6 LINE L1 -7 6147 5729 436 248 68 56 chr6 62251004 62251165 -127028389 - MIR SINE MIR -50 212 50 280 350 29 15 chr6 62251172 62251309 -127028245 - MIR SINE MIR -21 241 103 1332 269 50 17 chr6 62251510 62251927 -127027627 - LTR47B LTR ERVL 0 443 13 249 233 133 42 chr6 62252846 62252966 -127026588 - MIR SINE MIR -1 261 131 673 198 154 0 chr6 62253139 62253301 -127026253 + MER5A DNA MER1_type 2 188 -1 224 217 43 0 chr6 62253324 62253370 -127026184 - L2 LINE L2 -1 3312 3265 23 0 0 0 chr6 62253978 62254001 -127025553 + AT_rich Low_complexity Low_complexity 1 23 0 15395 79 1 1 chr6 62254493 62256506 -127023048 - L1P LINE L1 -4133 2013 1 25 0 0 0 chr6 62256695 62256720 -127022834 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr6 62259102 62259123 -127020431 + AT_rich Low_complexity Low_complexity 1 21 0 225 327 79 40 chr6 62259545 62259747 -127019807 - L2 LINE L2 -871 2443 2234 501 315 83 8 chr6 62260499 62260740 -127018814 + MIR SINE MIR 4 262 0 500 288 137 9 chr6 62261830 62262049 -127017505 - MIR SINE MIR -2 260 14 2300 51 0 41 chr6 62263034 62263351 -127016203 - AluY SINE Alu 0 305 1 2287 133 16 14 chr6 62264036 62264404 -127015150 - L1PB1 LINE L1 -7 6144 5776 181 114 0 45 chr6 62264416 62264460 -127015094 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 3511 100 17 2 chr6 62264467 62264997 -127014557 - L1PB1 LINE L1 -360 5791 5254 224 226 0 0 chr6 62265112 62265165 -127014389 - MIR SINE MIR -71 191 139 246 116 0 0 chr6 62265771 62265814 -127013740 + (CA)n Simple_repeat Simple_repeat 2 44 0 198 0 0 0 chr6 62266819 62266841 -127012713 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2297 62 0 0 chr6 62267529 62267805 -127011749 - AluY SINE Alu -35 276 1 259 333 62 0 chr6 62269278 62269374 -127010180 - MIR SINE MIR -44 218 117 240 152 0 0 chr6 62271198 62271244 -127008310 - AluSx SINE Alu -1 301 256 3167 104 11 0 chr6 62271246 62271690 -127007864 - MLT2A2 LTR ERVL -2 451 3 1572 170 15 4 chr6 62271690 62271949 -127007605 - AluSx SINE Alu -50 262 1 28 0 0 0 chr6 62272699 62272727 -127006827 + AT_rich Low_complexity Low_complexity 1 28 0 2317 110 20 59 chr6 62273397 62273739 -127005815 + THE1C LTR MaLR 1 328 -47 2175 104 14 0 chr6 62273739 62274028 -127005526 - AluSc SINE Alu -13 296 4 2317 110 20 59 chr6 62274028 62274075 -127005479 + THE1C LTR MaLR 328 375 0 10135 121 29 20 chr6 62274075 62274227 -127005327 + THE1C-int LTR MaLR 1 150 -1430 2582 119 3 11 chr6 62274227 62274605 -127004949 - THE1C LTR MaLR 0 375 1 10135 121 29 20 chr6 62274605 62276018 -127003536 + THE1C-int LTR MaLR 150 1580 0 718 144 51 0 chr6 62276018 62276136 -127003418 + THE1C LTR MaLR 1 124 -251 277 322 11 0 chr6 62276239 62276326 -127003228 - LTR50 LTR ERVL -214 581 494 551 266 106 23 chr6 62276372 62276628 -127002926 - LTR50 LTR ERVL -506 289 1 338 274 85 46 chr6 62276652 62276878 -127002676 - L1MDa LINE L1 -4711 1504 1147 243 0 0 0 chr6 62278157 62278184 -127001370 + (CA)n Simple_repeat Simple_repeat 1 27 0 226 276 118 26 chr6 62278402 62278478 -127001076 + MIR3 SINE MIR 87 169 -39 312 133 36 12 chr6 62279378 62279461 -127000093 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 324 0 0 0 chr6 62279704 62279740 -126999814 + (TA)n Simple_repeat Simple_repeat 1 36 0 325 132 0 29 chr6 62279861 62279929 -126999625 + (TA)n Simple_repeat Simple_repeat 1 66 0 249 211 11 63 chr6 62279931 62280026 -126999528 + L1MC4 LINE L1 6614 6703 -1339 222 37 0 0 chr6 62280026 62280053 -126999501 + (TA)n Simple_repeat Simple_repeat 2 28 0 579 265 108 15 chr6 62280729 62280997 -126998557 - L1ME3A LINE L1 -135 6035 5743 2258 260 98 36 chr6 62281242 62282242 -126997312 - L1MDa LINE L1 -5222 1174 102 2263 55 6 73 chr6 62282242 62282570 -126996984 - AluY SINE Alu -5 306 1 2258 260 98 36 chr6 62282570 62282642 -126996912 - L1MDa LINE L1 -6294 102 36 303 93 0 0 chr6 62283625 62283668 -126995886 + (TA)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr6 62283667 62283687 -126995867 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 23 0 0 0 chr6 62284597 62284620 -126994934 + AT_rich Low_complexity Low_complexity 1 23 0 366 281 44 7 chr6 62284695 62284830 -126994724 + L1ME LINE L1 5525 5664 -457 21 0 0 0 chr6 62286124 62286145 -126993409 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 62286328 62286351 -126993203 + AT_rich Low_complexity Low_complexity 1 23 0 413 286 71 42 chr6 62286357 62286525 -126993029 - MIR3 SINE MIR -16 192 20 187 152 15 30 chr6 62286802 62286868 -126992686 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 22 56 0 0 chr6 62288274 62288310 -126991244 + AT_rich Low_complexity Low_complexity 1 36 0 233 306 37 52 chr6 62290271 62290308 -126989246 + MIR SINE MIR 60 96 -166 487 280 47 52 chr6 62290308 62290519 -126989035 + MER63A DNA MER1_type 1 210 0 233 306 37 52 chr6 62290519 62290615 -126988939 + MIR SINE MIR 96 191 -71 319 338 176 29 chr6 62290714 62291339 -126988215 + L3 LINE CR1 670 1386 -191 1953 136 7 10 chr6 62291908 62292218 -126987336 - AluJb SINE Alu -3 309 1 2086 150 9 3 chr6 62293869 62294202 -126985352 - PABL_A LTR ERV1 0 660 326 264 319 9 71 chr6 62294303 62294416 -126985138 + MER5A DNA MER1_type 81 186 -3 1280 315 120 14 chr6 62295250 62295808 -126983746 - MLT2E LTR ERVL -2 626 10 200 397 8 24 chr6 62295877 62296013 -126983541 + MIR SINE MIR 9 139 -69 5327 166 32 42 chr6 62296208 62296447 -126983107 + L1PA15 LINE L1 4141 4381 -1784 2222 93 21 0 chr6 62296447 62296736 -126982818 + AluSc SINE Alu 1 295 -14 5327 166 32 42 chr6 62296736 62297404 -126982150 + L1PA15 LINE L1 4381 5054 -1111 1937 180 9 3 chr6 62297404 62297737 -126981817 - MER1B DNA MER1_type -2 335 1 5327 166 32 42 chr6 62297737 62298712 -126980842 + L1PA15 LINE L1 5054 6160 -5 417 241 0 132 chr6 62298881 62299055 -126980499 - MER5B DNA MER1_type -20 158 8 21 36 0 0 chr6 62299719 62299747 -126979807 + AT_rich Low_complexity Low_complexity 1 28 0 303 288 8 68 chr6 62300058 62300190 -126979364 - MIR SINE MIR -21 241 118 426 132 0 0 chr6 62300272 62300348 -126979206 + (TCCA)n Simple_repeat Simple_repeat 1 76 0 257 391 70 19 chr6 62300544 62300759 -126978795 + LTR33 LTR ERVL 91 316 -207 356 217 58 80 chr6 62300775 62300913 -126978641 + Charlie8 DNA MER1_type 70 204 -2213 22 35 0 0 chr6 62301527 62301556 -126977998 + AT_rich Low_complexity Low_complexity 1 29 0 358 211 32 89 chr6 62302332 62302455 -126977099 + Charlie8 DNA MER1_type 89 204 -2213 22 35 0 0 chr6 62303069 62303098 -126976456 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 62305558 62305595 -126973959 + AT_rich Low_complexity Low_complexity 1 37 0 1751 24 0 0 chr6 62306509 62306719 -126972835 + L1P LINE L1 4922 5131 -1015 7622 243 63 53 chr6 62308084 62309592 -126969962 - L1MEc LINE L1 -1022 5935 4443 564 151 9 0 chr6 62309592 62309698 -126969856 - FLAM_C SINE Alu 0 143 37 7622 243 63 53 chr6 62309698 62311257 -126968297 - L1MEc LINE L1 -2514 4443 2754 3544 166 11 3 chr6 62311257 62311873 -126967681 - L1PA16 LINE L1 -9 6157 5537 7622 243 63 53 chr6 62311873 62311989 -126967565 - L1MEc LINE L1 -4203 2754 2641 23 0 0 0 chr6 62312327 62312350 -126967204 + AT_rich Low_complexity Low_complexity 1 23 0 1759 283 59 40 chr6 62312359 62313397 -126966157 - L1MEc LINE L1 -4590 2369 1312 2648 301 22 39 chr6 62313408 62314357 -126965197 - L1MEc LINE L1 -5916 943 11 200 219 24 0 chr6 62317271 62317312 -126962242 + L2 LINE L2 3263 3304 -9 947 252 17 21 chr6 62317676 62317910 -126961644 + LTR40a LTR ERVL 287 519 0 291 207 0 0 chr6 62317928 62317986 -126961568 - MLT1G1 LTR MaLR -7 588 531 2056 210 31 72 chr6 62317987 62318581 -126960973 + L1MC/D LINE L1 4782 5342 -1004 1796 68 0 24 chr6 62318581 62318829 -126960725 + AluY SINE Alu 1 242 -69 2056 210 31 72 chr6 62318829 62319081 -126960473 + L1MC/D LINE L1 5342 5603 -743 333 0 0 0 chr6 62319120 62319157 -126960397 + (CA)n Simple_repeat Simple_repeat 1 37 0 470 301 45 66 chr6 62319591 62319860 -126959694 + MIR SINE MIR 9 262 0 262 279 0 0 chr6 62320463 62320531 -126959023 + L2 LINE L2 3246 3313 0 241 143 54 0 chr6 62320946 62321002 -126958552 + (CATA)n Simple_repeat Simple_repeat 4 62 0 23 33 0 0 chr6 62321137 62321167 -126958387 + AT_rich Low_complexity Low_complexity 1 30 0 785 245 120 0 chr6 62322576 62322776 -126956778 - MER58A DNA MER1_type 0 224 1 1900 163 3 0 chr6 62322897 62323204 -126956350 + AluJo SINE Alu 1 308 -4 2197 104 3 0 chr6 62324232 62324530 -126955024 + AluSp SINE Alu 1 299 -14 386 314 73 48 chr6 62325067 62325465 -126954089 - L2 LINE L2 -101 3212 2805 1802 155 11 0 chr6 62325811 62326095 -126953459 - AluJb SINE Alu -3 309 23 1059 72 0 0 chr6 62327277 62327416 -126952138 + L1PA3 LINE L1 6014 6152 -3 23 54 0 0 chr6 62327416 62327453 -126952101 + AT_rich Low_complexity Low_complexity 1 37 0 257 0 0 29 chr6 62327453 62327487 -126952067 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr6 62328167 62328188 -126951366 + AT_rich Low_complexity Low_complexity 1 21 0 963 158 248 17 chr6 62328207 62328469 -126951085 - AluSg SINE Alu 0 300 1 28 48 0 0 chr6 62328885 62328927 -126950627 + AT_rich Low_complexity Low_complexity 1 42 0 208 350 43 43 chr6 62329017 62329203 -126950351 + MIR SINE MIR 3 188 -74 204 290 170 0 chr6 62330870 62330970 -126948584 + MIR SINE MIR 87 203 -59 228 111 0 0 chr6 62331262 62331298 -126948256 + (TG)n Simple_repeat Simple_repeat 1 36 0 7240 157 27 9 chr6 62332466 62334717 -126944837 - L1MA8 LINE L1 -1 6290 3997 229 357 31 62 chr6 62335031 62335160 -126944394 + L2 LINE L2 3134 3258 -14 960 108 0 29 chr6 62335273 62335412 -126944142 + AluSq SINE Alu 47 181 -132 282 56 0 0 chr6 62335997 62336033 -126943521 + (CA)n Simple_repeat Simple_repeat 2 37 0 384 285 48 56 chr6 62336687 62336870 -126942684 - MIR3 SINE MIR -28 180 3 191 288 17 0 chr6 62336956 62337015 -126942539 - MIR3 SINE MIR -54 154 95 21 0 0 0 chr6 62339042 62339063 -126940491 + AT_rich Low_complexity Low_complexity 1 21 0 29 81 0 27 chr6 62340000 62340111 -126939443 + AT_rich Low_complexity Low_complexity 1 108 0 1625 163 62 0 chr6 62340111 62340387 -126939167 + AluY SINE Alu 1 293 -18 492 18 0 0 chr6 62341007 62341064 -126938490 + (TG)n Simple_repeat Simple_repeat 2 58 0 384 378 61 11 chr6 62341080 62341358 -126938196 - HAL1 LINE L1 -790 1717 1426 497 318 56 10 chr6 62342135 62342330 -126937224 + MLT2E LTR ERVL 1 204 -424 2489 268 46 14 chr6 62342332 62343248 -126936306 + ERVL-E LTR ERVL 4272 5235 -250 600 200 11 84 chr6 62343249 62343439 -126936115 + MER96B DNA MER1_type? 1 176 -241 911 267 93 46 chr6 62343518 62344047 -126935507 + MLT2E LTR ERVL 1 628 0 1762 268 19 28 chr6 62344051 62344622 -126934932 - L1 LINE L1 -3200 2946 2381 4967 168 31 33 chr6 62344667 62346260 -126933294 - L1PB3 LINE L1 -2 7214 5623 3162 108 16 0 chr6 62346260 62346705 -126932849 - MLT2A2 LTR ERVL 0 453 2 11492 88 12 4 chr6 62346706 62347131 -126932423 - HERVL-A2 LTR ERVL 0 5654 5234 261 0 0 0 chr6 62347131 62347160 -126932394 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 11492 88 12 4 chr6 62347160 62348769 -126930785 - HERVL-A2 LTR ERVL -420 5234 3518 1606 244 152 26 chr6 62348775 62349977 -126929577 - L1PB3 LINE L1 -3261 3947 2593 2036 188 34 30 chr6 62349998 62350543 -126929011 - MLT2A2 LTR ERVL -4 550 1 1795 235 25 95 chr6 62350559 62351501 -126928053 - L1PB3 LINE L1 -4652 2557 1695 232 347 36 36 chr6 62351668 62351864 -126927690 - L1PB3 LINE L1 -5860 1349 1154 1035 357 59 20 chr6 62351963 62352691 -126926863 - L1PB3 LINE L1 -6320 889 69 2367 87 0 0 chr6 62352925 62353223 -126926331 - AluY SINE Alu -10 301 4 297 0 0 0 chr6 62354412 62354445 -126925109 + (CA)n Simple_repeat Simple_repeat 2 34 0 27132 45 3 0 chr6 62355492 62359661 -126919893 - L1PA4 LINE L1 0 6155 1977 1805 73 0 0 chr6 62361098 62361370 -126918184 + L1PA7 LINE L1 5909 6180 0 269 287 0 21 chr6 62362686 62362780 -126916774 + MIR SINE MIR 124 215 -47 297 369 45 25 chr6 62362848 62363092 -126916462 - L2 LINE L2 -729 2585 2337 324 376 168 10 chr6 62363272 62363860 -126915694 - L2 LINE L2 -352 2962 2282 356 172 17 0 chr6 62363860 62363918 -126915636 - Tigger5 DNA MER2_type 0 2323 2265 2045 134 7 3 chr6 62363919 62364226 -126915328 - AluSx SINE Alu -4 308 1 365 222 14 0 chr6 62364231 62364303 -126915251 + Tigger5 DNA MER2_type 2248 2320 -3 329 250 40 0 chr6 62364303 62364378 -126915176 - Tigger5 DNA MER2_type -2245 78 1 253 316 53 113 chr6 62364378 62364603 -126914951 - L2 LINE L2 -1029 2285 2099 1645 110 0 4 chr6 62364603 62364831 -126914723 + AluY SINE Alu 79 305 -6 253 316 53 113 chr6 62364831 62365057 -126914497 - L2 LINE L2 -1215 2099 1861 509 259 171 22 chr6 62365421 62365649 -126913905 - MIR SINE MIR 0 262 1 2527 62 3 3 chr6 62365919 62366243 -126913311 - L1PA5 LINE L1 -8 6146 5823 2100 33 0 0 chr6 62366244 62366560 -126912994 + L1P2 LINE L1 5137 5452 -702 180 169 15 31 chr6 62366837 62366902 -126912652 + GA-rich Low_complexity Low_complexity 1 64 0 2173 88 0 30 chr6 62367353 62367650 -126911904 + AluY SINE Alu 1 288 -23 234 0 0 0 chr6 62367661 62367687 -126911867 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 286 411 78 38 chr6 62368047 62368129 -126911425 - L2 LINE L2 -12 3260 3183 2084 157 0 0 chr6 62368129 62368441 -126911113 + AluSx SINE Alu 1 312 0 286 411 78 38 chr6 62368441 62368784 -126910770 - L2 LINE L2 -89 3183 2818 311 370 61 68 chr6 62369381 62369437 -126910117 + L2 LINE L2 2405 2460 -812 1880 166 26 37 chr6 62369437 62369816 -126909738 - THE1C LTR MaLR 0 375 1 311 370 61 68 chr6 62369816 62370626 -126908928 + L2 LINE L2 2460 3268 -4 180 431 7 15 chr6 62371237 62371374 -126908180 - L2 LINE L2 -952 2362 2227 2357 231 44 47 chr6 62371380 62372130 -126907424 + L1MB7 LINE L1 5428 6175 -9 2670 73 3 3 chr6 62372254 62372608 -126906946 + THE1A LTR MaLR 1 354 -1 2129 63 4 4 chr6 62372608 62372877 -126906677 + AluY SINE Alu 1 269 -42 207 88 0 0 chr6 62372882 62372916 -126906638 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1985 128 7 40 chr6 62373059 62373363 -126906191 + AluSx SINE Alu 1 294 -18 22 56 0 0 chr6 62373574 62373610 -126905944 + AT_rich Low_complexity Low_complexity 1 36 0 346 241 0 0 chr6 62373901 62373979 -126905575 + MIR SINE MIR 72 148 -62 2411 181 46 49 chr6 62374118 62374201 -126905353 + L1MA4 LINE L1 4720 4802 -1344 1994 147 3 0 chr6 62374201 62374500 -126905054 + AluY SINE Alu 1 300 -11 2411 181 46 49 chr6 62374500 62374575 -126904979 + L1MA4 LINE L1 4802 4876 -1270 2361 111 0 42 chr6 62374575 62374953 -126904601 - L1PA10 LINE L1 0 6168 5807 2411 181 46 49 chr6 62374953 62375406 -126904148 + L1MA4 LINE L1 4876 5330 -816 3110 103 11 0 chr6 62375407 62375854 -126903700 + L1PA10 LINE L1 5706 6157 -11 5354 162 12 8 chr6 62375985 62376960 -126902594 + L1MA4 LINE L1 5316 6294 -6 360 208 62 141 chr6 62377226 62377418 -126902136 + L1MC4 LINE L1 7849 8025 -17 279 0 0 0 chr6 62378377 62378408 -126901146 + (T)n Simple_repeat Simple_repeat 1 31 0 2171 125 3 0 chr6 62378646 62378941 -126900613 + AluSq SINE Alu 1 296 -17 2286 97 0 3 chr6 62379077 62379387 -126900167 + AluSq SINE Alu 1 309 -4 1240 228 26 45 chr6 62379735 62380112 -126899442 - MLT1A2 LTR MaLR -4 370 1 826 364 72 16 chr6 62380114 62380743 -126898811 - L3 LINE CR1 -593 984 321 21 0 0 0 chr6 62380900 62380921 -126898633 + AT_rich Low_complexity Low_complexity 1 21 0 2424 57 0 0 chr6 62383838 62384135 -126895419 + AluY SINE Alu 1 297 -14 809 348 77 19 chr6 62384259 62384882 -126894672 - L2 LINE L2 -472 2842 2184 1348 209 22 4 chr6 62385069 62385337 -126894217 + AluJo SINE Alu 9 281 -31 223 346 71 24 chr6 62386635 62386762 -126892792 - MIR3 SINE MIR -63 145 13 1939 144 0 7 chr6 62387431 62387723 -126891831 - AluSx SINE Alu -22 290 1 24 0 0 0 chr6 62388220 62388244 -126891310 + AT_rich Low_complexity Low_complexity 1 24 0 2018 139 150 5 chr6 62388545 62388919 -126890635 - MSTA LTR MaLR 0 428 1 725 228 63 5 chr6 62388921 62389220 -126890334 + MLT1A1 LTR MaLR 1 359 -6 1365 260 56 37 chr6 62389583 62390064 -126889490 - MLT1J LTR MaLR 0 511 22 429 347 19 50 chr6 62391277 62391539 -126888015 + MLT1K LTR MaLR 325 578 -10 420 301 45 0 chr6 62391819 62391952 -126887602 - MIR SINE MIR -8 254 116 26 30 0 0 chr6 62392355 62392388 -126887166 + AT_rich Low_complexity Low_complexity 1 33 0 1994 146 44 14 chr6 62392871 62393235 -126886319 + THE1C LTR MaLR 1 375 0 677 254 10 71 chr6 62393348 62393545 -126886009 + MER58A DNA MER1_type 1 185 -39 1028 268 43 87 chr6 62393629 62394192 -126885362 - MER68 LTR ERV1 -19 543 6 252 246 0 0 chr6 62394475 62394532 -126885022 + MLT1K LTR MaLR 191 247 -341 2158 128 0 0 chr6 62394716 62395014 -126884540 + AluSq SINE Alu 1 298 -15 447 278 19 9 chr6 62395220 62395342 -126884212 - MIR SINE MIR -63 145 33 36 40 0 0 chr6 62396614 62396664 -126882890 + AT_rich Low_complexity Low_complexity 1 50 0 506 263 0 58 chr6 62396676 62396847 -126882707 + MER112 DNA MER1_type 79 239 -21 531 308 69 49 chr6 62397105 62397410 -126882144 + MLT1J2 LTR MaLR 139 449 -1 32 57 0 0 chr6 62398799 62398852 -126880702 + AT_rich Low_complexity Low_complexity 1 53 0 1207 214 78 19 chr6 62399449 62399720 -126879834 - AluJo SINE Alu -23 289 3 309 311 40 119 chr6 62399968 62400322 -126879232 - L1MEd LINE L1 -4625 1759 1434 470 256 65 29 chr6 62400350 62400596 -126878958 - L1MEd LINE L1 -4867 1505 1251 529 305 164 63 chr6 62400930 62401533 -126878021 - L1MEd LINE L1 -5445 927 264 2405 230 86 39 chr6 62401702 62402701 -126876853 + L1ME2 LINE L1 5127 6164 0 250 361 59 20 chr6 62403763 62403965 -126875589 + L2 LINE L2 2549 2758 -556 203 236 19 19 chr6 62404198 62404304 -126875250 + GA-rich Low_complexity Low_complexity 3 108 0 182 214 24 0 chr6 62404606 62404648 -126874906 + L2 LINE L2 2904 2946 -326 * 373 335 94 6 chr6 62404645 62404815 -126874739 + MER91B DNA MER1_type 5 189 -1 643 300 152 12 chr6 62404828 62405151 -126874403 + L2 LINE L2 2941 3308 -5 229 258 0 0 chr6 62405169 62405231 -126874323 + GA-rich Low_complexity Low_complexity 3 64 0 975 138 44 12 chr6 62405295 62405455 -126874099 + FRAM SINE Alu 1 165 -1 334 351 195 3 chr6 62406176 62406509 -126873045 + L2 LINE L2 2473 2869 -445 401 256 19 83 chr6 62406786 62406942 -126872612 + MIR SINE MIR 100 245 -17 2151 113 7 7 chr6 62407518 62407818 -126871736 + AluSp SINE Alu 1 300 -13 2299 108 0 0 chr6 62408975 62409280 -126870274 + AluSx SINE Alu 1 305 -7 332 252 99 54 chr6 62409713 62409824 -126869730 - MLT1L LTR MaLR -332 283 168 229 323 0 0 chr6 62409938 62410000 -126869554 + MLT1K LTR MaLR 185 246 -342 26 74 0 0 chr6 62410179 62410233 -126869321 + AT_rich Low_complexity Low_complexity 1 54 0 1622 206 113 38 chr6 62410528 62410998 -126868556 - MLT1D LTR MaLR 0 505 1 311 304 59 52 chr6 62411710 62411845 -126867709 - L2 LINE L2 -18 3295 3160 216 67 0 0 chr6 62412242 62412272 -126867282 + (CA)n Simple_repeat Simple_repeat 2 31 0 443 323 20 35 chr6 62413097 62413295 -126866259 - MIR SINE MIR -39 223 29 915 216 64 15 chr6 62413743 62413947 -126865607 + MER20 DNA MER1_type 6 219 0 374 295 64 12 chr6 62414163 62414336 -126865218 - L1ME LINE L1 -366 5755 5574 475 241 108 32 chr6 62415770 62415928 -126863626 - MIR3 SINE MIR -1 207 38 431 266 188 0 chr6 62416788 62416916 -126862638 + MER5A DNA MER1_type 32 183 -6 21 0 0 0 chr6 62417067 62417088 -126862466 + AT_rich Low_complexity Low_complexity 1 21 0 362 376 38 19 chr6 62417223 62417433 -126862121 - MIR SINE MIR 0 262 49 438 290 112 70 chr6 62417724 62418196 -126861358 + L1ME4a LINE L1 5613 6104 -17 21 57 0 0 chr6 62419732 62419767 -126859787 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 62420123 62420144 -126859410 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr6 62422020 62422049 -126857505 + (A)n Simple_repeat Simple_repeat 1 29 0 229 260 14 14 chr6 62422642 62422715 -126856839 + (TA)n Simple_repeat Simple_repeat 2 74 0 22 56 0 0 chr6 62423180 62423216 -126856338 + AT_rich Low_complexity Low_complexity 1 36 0 2170 102 0 3 chr6 62424345 62424648 -126854906 + AluSq SINE Alu 1 302 -11 8163 218 96 44 chr6 62424651 62427214 -126852340 + L1MD1 LINE L1 26 2716 -3824 1431 204 3 40 chr6 62427227 62427526 -126852028 + AluJo SINE Alu 6 293 -19 241 263 0 0 chr6 62427561 62427618 -126851936 + MER20 DNA MER1_type 160 216 -3 807 217 80 29 chr6 62427650 62427926 -126851628 + L1MC4 LINE L1 7753 8042 0 2239 263 29 11 chr6 62427946 62428702 -126850852 + L1MD1 LINE L1 2722 3491 -3049 * 38827 54 7 0 chr6 62428688 62434792 -126844762 + L1PA4 LINE L1 1 6147 -8 4826 228 68 60 chr6 62434822 62435922 -126843632 + L1MD1 LINE L1 3467 4557 -2079 2900 3 0 0 chr6 62435922 62436233 -126843321 - AluYa5 SINE Alu 0 311 1 4826 228 68 60 chr6 62436233 62438118 -126841436 + L1MD1 LINE L1 4557 6467 -169 9688 78 8 1 chr6 62438119 62439441 -126840113 + L1P LINE L1 3906 5236 -910 6686 74 7 3 chr6 62439441 62440499 -126839055 + L1PA7 LINE L1 5087 6152 -2 1041 147 0 0 chr6 62440499 62440662 -126838892 + L1MD1 LINE L1 6455 6617 -19 499 194 0 0 chr6 62441100 62441193 -126838361 + L1MC/D LINE L1 5530 5622 -620 303 49 0 0 chr6 62442687 62442728 -126836826 + (TAA)n Simple_repeat Simple_repeat 1 41 0 903 362 131 18 chr6 62442872 62443853 -126835701 + L2 LINE L2 2186 3272 0 22 0 0 0 chr6 62444735 62444757 -126834797 + AT_rich Low_complexity Low_complexity 1 22 0 229 301 14 14 chr6 62445132 62445205 -126834349 - MIR SINE MIR -113 149 77 26 0 0 0 chr6 62445384 62445410 -126834144 + AT_rich Low_complexity Low_complexity 1 26 0 562 237 26 26 chr6 62446600 62446756 -126832798 + MIR SINE MIR 14 169 -93 1031 220 85 61 chr6 62446999 62447472 -126832082 - L1MC5 LINE L1 -228 7733 7250 416 184 39 0 chr6 62447530 62447633 -126831921 - L1MA8 LINE L1 -35 6256 6150 1346 201 74 72 chr6 62447645 62448172 -126831382 - L1MC5 LINE L1 -722 7239 6712 560 249 141 43 chr6 62448251 62448621 -126830933 - L1MC4 LINE L1 -153 7889 7484 21 57 0 0 chr6 62449032 62449067 -126830487 + AT_rich Low_complexity Low_complexity 1 35 0 441 98 0 0 chr6 62449413 62449474 -126830080 - Alu SINE Alu -257 61 1 271 316 127 42 chr6 62449486 62449698 -126829856 + MIR SINE MIR 32 261 -1 13474 206 44 32 chr6 62450113 62455479 -126824075 + L1MA4A LINE L1 140 5618 -1387 2405 80 0 0 chr6 62455479 62455778 -126823776 + AluY SINE Alu 1 299 -12 13474 206 44 32 chr6 62455778 62457063 -126822491 + L1MA4A LINE L1 5618 6886 -119 919 208 0 2 chr6 62457064 62457300 -126822254 + AluJb SINE Alu 3 287 -25 525 151 8 79 chr6 62457303 62457429 -126822125 + L1MA4A LINE L1 6874 6990 -15 24 0 0 0 chr6 62457593 62457617 -126821937 + AT_rich Low_complexity Low_complexity 1 24 0 201 355 26 26 chr6 62457663 62457739 -126821815 - MER5A DNA MER1_type -7 182 107 234 0 0 0 chr6 62457746 62457772 -126821782 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 209 161 0 0 chr6 62457791 62457822 -126821732 - MER5A DNA MER1_type -155 34 4 216 97 0 0 chr6 62457952 62457983 -126821571 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 582 369 69 5 chr6 62458453 62458830 -126820724 - L2 LINE L2 -1601 1713 1313 29 0 0 0 chr6 62458908 62458937 -126820617 + AT_rich Low_complexity Low_complexity 1 29 0 1317 139 5 5 chr6 62458968 62459170 -126820384 - AluSg/x SINE Alu -10 302 101 383 239 0 23 chr6 62459545 62459633 -126819921 + MIR SINE MIR 79 164 -98 196 231 39 0 chr6 62459757 62459809 -126819745 - MIR SINE MIR -118 144 91 28 29 0 0 chr6 62459852 62459887 -126819667 + AT_rich Low_complexity Low_complexity 1 35 0 417 299 84 28 chr6 62459936 62460187 -126819367 + HAL1 LINE L1 1489 1753 -754 354 266 53 21 chr6 62460818 62461077 -126818477 + HAL1b LINE L1 746 2403 -104 275 264 114 47 chr6 62461105 62461298 -126818256 + HAL1 LINE L1 2276 2481 -26 22 0 0 0 chr6 62461323 62461345 -126818209 + AT_rich Low_complexity Low_complexity 1 22 0 615 248 132 54 chr6 62461529 62461833 -126817721 + MLT1J LTR MaLR 1 290 -156 852 274 28 20 chr6 62462350 62462605 -126816949 + MIR SINE MIR 6 262 0 23 33 0 0 chr6 62463126 62463156 -126816398 + AT_rich Low_complexity Low_complexity 1 30 0 658 298 82 34 chr6 62463650 62464003 -126815551 - MLT1L LTR MaLR -27 588 219 2305 104 3 0 chr6 62465647 62465954 -126813600 + AluY SINE Alu 1 308 -3 277 333 60 18 chr6 62465966 62466134 -126813420 + MER5A DNA MER1_type 8 182 -7 1910 148 30 3 chr6 62466279 62466576 -126812978 - AluJb SINE Alu -7 305 1 268 354 71 9 chr6 62466598 62466711 -126812843 + L2 LINE L2 3144 3263 -9 264 77 0 0 chr6 62468530 62468569 -126810985 + (TA)n Simple_repeat Simple_repeat 2 40 0 2165 101 0 0 chr6 62468578 62468855 -126810699 - AluSg SINE Alu -30 280 4 444 317 35 83 chr6 62468985 62469089 -126810465 - L1MC/D LINE L1 -1988 5820 5713 1308 195 120 10 chr6 62469089 62469397 -126810157 + MER2 DNA MER2_type 3 344 0 444 317 35 83 chr6 62469397 62469752 -126809802 - L1MC/D LINE L1 -2095 5713 5383 2438 87 0 0 chr6 62469873 62470172 -126809382 + AluSq SINE Alu 2 300 -13 195 42 0 0 chr6 62470172 62470196 -126809358 + (TG)n Simple_repeat Simple_repeat 2 25 0 1570 185 28 11 chr6 62470226 62470391 -126809163 - AluJo SINE Alu -20 292 118 216 0 0 0 chr6 62470391 62470415 -126809139 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1570 185 28 11 chr6 62470415 62470536 -126809018 - AluJo SINE Alu -194 118 1 481 252 0 10 chr6 62470717 62470820 -126808734 - L2 LINE L2 -8 3305 3204 216 97 0 0 chr6 62472098 62472129 -126807425 + (TC)n Simple_repeat Simple_repeat 2 32 0 1406 146 5 5 chr6 62473468 62473680 -126805874 + AluSx SINE Alu 1 212 -100 215 132 38 19 chr6 62474611 62474664 -126804890 + A-rich Low_complexity Low_complexity 2 55 0 24 85 0 0 chr6 62474754 62474813 -126804741 + AT_rich Low_complexity Low_complexity 1 59 0 1795 213 34 24 chr6 62475039 62475456 -126804098 - MER82 DNA MER2_type -232 421 1 261 301 161 49 chr6 62477144 62477287 -126802267 - MIR3 SINE MIR -19 189 31 2268 92 7 7 chr6 62477326 62477620 -126801934 + AluSc SINE Alu 1 294 -15 804 273 6 0 chr6 62477642 62477825 -126801729 - MER5A DNA MER1_type -5 184 1 182 317 48 67 chr6 62478349 62478453 -126801101 - L2 LINE L2 -17 3255 3154 306 343 119 66 chr6 62480057 62480934 -126798620 - L2 LINE L2 -1344 1970 1048 322 241 98 0 chr6 62480990 62481102 -126798452 + L1MA1 LINE L1 5815 5937 -365 2184 78 3 3 chr6 62481019 62481315 -126798239 + L1PB1 LINE L1 5855 6150 -1 856 291 52 16 chr6 62481962 62482271 -126797283 - MER110 LTR ERV1 -5 486 167 25 0 0 0 chr6 62483763 62483788 -126795766 + AT_rich Low_complexity Low_complexity 1 25 0 2220 99 0 3 chr6 62484353 62484646 -126794908 - AluSc SINE Alu -17 292 1 447 34 0 0 chr6 62484858 62484917 -126794637 + L1PA6 LINE L1 6096 6154 0 1708 170 3 35 chr6 62484930 62485242 -126794312 + AluJo SINE Alu 3 304 -8 21 0 0 0 chr6 62485745 62485766 -126793788 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr6 62486026 62486049 -126793505 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 491 285 97 43 chr6 62487115 62487662 -126791892 + L1ME4a LINE L1 5310 5883 -238 227 192 41 41 chr6 62487712 62487785 -126791769 + L1ME4a LINE L1 5975 6047 -74 5651 111 31 29 chr6 62487938 62488146 -126791408 + L1PA13 LINE L1 5127 5333 -830 1597 60 0 28 chr6 62488146 62488364 -126791190 - L1PA5 LINE L1 -2 6152 5941 5651 111 31 29 chr6 62488364 62489190 -126790364 + L1PA13 LINE L1 5333 6163 0 257 316 0 0 chr6 62489945 62490021 -126789533 + MER117 DNA MER1_type 11 86 -111 187 268 54 0 chr6 62490339 62490395 -126789159 - L2 LINE L2 0 3313 3255 195 348 0 14 chr6 62491432 62491501 -126788053 + MIR3 SINE MIR 96 163 -45 916 191 59 187 chr6 62491902 62492597 -126786957 + L1MC4 LINE L1 7437 8042 0 1339 170 4 32 chr6 62492668 62492915 -126786639 + AluJo SINE Alu 47 286 -26 411 56 0 0 chr6 62492915 62492969 -126786585 + (TA)n Simple_repeat Simple_repeat 2 55 0 415 278 118 14 chr6 62493215 62493359 -126786195 + MER102b DNA MER1_type 134 292 -49 290 273 0 0 chr6 62493499 62493565 -126785989 + MER102b DNA MER1_type 276 341 0 730 256 64 17 chr6 62493984 62494225 -126785329 - MIR SINE MIR 0 262 16 446 269 214 7 chr6 62495524 62495669 -126783885 - MER5A DNA MER1_type -6 183 9 285 330 35 9 chr6 62495669 62495784 -126783770 - MIR3 SINE MIR -40 168 51 191 211 143 91 chr6 62495758 62495933 -126783621 + MIR SINE MIR 12 195 -67 * 206 309 82 14 chr6 62496365 62496469 -126783085 + MIR SINE MIR 41 145 -63 201 246 0 53 chr6 62497544 62497601 -126781953 + CT-rich Low_complexity Low_complexity 3 56 0 188 324 14 27 chr6 62498048 62498122 -126781432 + L2 LINE L2 3196 3268 -4 681 158 20 86 chr6 62498189 62498341 -126781213 + MER20B DNA MER1_type 1 142 -77 2503 50 0 0 chr6 62498594 62498892 -126780662 + AluY SINE Alu 1 298 -13 329 235 103 73 chr6 62498975 62499111 -126780443 + MIR SINE MIR 48 187 -75 210 71 0 0 chr6 62499111 62499139 -126780415 + (TA)n Simple_repeat Simple_repeat 2 29 0 489 269 65 10 chr6 62499431 62499624 -126779930 + MLT1I LTR MaLR 195 446 -4 233 350 20 0 chr6 62500885 62500985 -126778569 + MER20B DNA MER1_type 1 102 -681 925 262 92 37 chr6 62501031 62501550 -126778004 + MER20B DNA MER1_type 223 770 -13 316 277 51 96 chr6 62503198 62503375 -126776179 + L2 LINE L2 2616 2784 -530 966 206 82 116 chr6 62503588 62503966 -126775588 - MLT1A1 LTR MaLR 0 365 1 251 348 52 17 chr6 62504080 62504195 -126775359 + L2 LINE L2 3154 3272 0 299 381 8 0 chr6 62504892 62505018 -126774536 + L2 LINE L2 3186 3312 -1 187 340 83 35 chr6 62505673 62505817 -126773737 - L2 LINE L2 -1199 2115 1965 417 86 0 0 chr6 62506960 62507018 -126772536 + (TTGG)n Simple_repeat Simple_repeat 2 59 0 521 275 8 0 chr6 62507578 62507709 -126771845 - MER94 DNA DNA -1 133 2 2779 200 50 22 chr6 62507949 62508163 -126771391 + L1MB8 LINE L1 5539 5746 -432 1261 190 0 4 chr6 62508163 62508400 -126771154 - MER46A DNA MER2_type 0 236 1 2779 200 50 22 chr6 62508400 62508806 -126770748 + L1MB8 LINE L1 5746 6176 -2 304 267 30 30 chr6 62508884 62509019 -126770535 - MIR SINE MIR -56 206 72 2121 134 111 10 chr6 62509887 62510276 -126769278 + MSTC LTR MaLR 1 428 0 2198 214 16 45 chr6 62510504 62511079 -126768475 + L1MB7 LINE L1 5563 6120 -64 293 204 171 0 chr6 62511107 62511195 -126768359 + L1ME LINE L1 3840 3942 -2204 708 265 19 94 chr6 62511246 62511551 -126768003 - MLT1I LTR MaLR 0 409 142 1889 35 0 13 chr6 62511551 62511780 -126767774 - AluY SINE Alu -1 310 85 708 265 19 94 chr6 62511780 62511847 -126767707 - MLT1I LTR MaLR -267 142 72 426 69 0 0 chr6 62512543 62512601 -126766953 + (TA)n Simple_repeat Simple_repeat 2 59 0 577 299 10 25 chr6 62514119 62514311 -126765243 + MIR3 SINE MIR 6 196 -12 234 0 0 0 chr6 62514327 62514353 -126765201 + (TATG)n Simple_repeat Simple_repeat 3 28 0 2073 139 0 0 chr6 62514355 62514649 -126764905 - AluSx SINE Alu -12 300 7 979 126 0 20 chr6 62514763 62514914 -126764640 - AluSx SINE Alu -153 159 12 370 258 56 56 chr6 62515077 62515310 -126764244 + L1MC5 LINE L1 7679 7911 -50 731 304 53 12 chr6 62515595 62515937 -126763617 + L1ME LINE L1 4878 5233 -913 2899 166 35 6 chr6 62516045 62516580 -126762974 + L1MC3 LINE L1 7126 7676 -109 180 0 0 0 chr6 62516580 62516600 -126762954 + (GA)n Simple_repeat Simple_repeat 2 21 0 590 245 82 70 chr6 62516661 62516941 -126762613 + MLT1H1 LTR MaLR 207 493 -62 2078 115 0 7 chr6 62516941 62517269 -126762285 - AluSg1 SINE Alu 0 309 1 590 245 82 70 chr6 62517269 62517331 -126762223 + MLT1H1 LTR MaLR 493 553 -2 784 283 5 14 chr6 62517734 62517953 -126761601 + MIR SINE MIR 46 262 0 496 381 46 21 chr6 62518115 62518503 -126761051 + L1ME LINE L1 5403 5800 -321 3006 167 31 28 chr6 62519137 62519682 -126759872 - MER21A LTR ERV1 -9 922 376 1182 173 92 32 chr6 62519687 62519936 -126759618 - MER21A LTR ERV1 -667 264 1 1520 181 92 12 chr6 62520829 62521167 -126758387 + MLT1A1 LTR MaLR 1 365 0 184 360 71 66 chr6 62521311 62521522 -126758032 - L2 LINE L2 -230 3042 2831 588 236 8 8 chr6 62521592 62521715 -126757839 + FLAM_A SINE Alu 1 123 -10 1698 168 0 44 chr6 62521732 62522053 -126757501 + AluJb SINE Alu 3 309 -3 3726 75 20 6 chr6 62522067 62522573 -126756981 - L1PA8 LINE L1 -7 6165 5653 305 35 58 58 chr6 62522573 62522659 -126756895 + (TTAA)n Simple_repeat Simple_repeat 1 86 0 6098 106 12 32 chr6 62522665 62523613 -126755941 - L1PA8 LINE L1 -1142 5004 4076 2444 114 8 13 chr6 62523982 62524359 -126755195 - THE1C LTR MaLR 0 375 1 23 33 0 0 chr6 62524499 62524529 -126755025 + AT_rich Low_complexity Low_complexity 1 30 0 958 266 22 0 chr6 62524529 62524755 -126754799 - MIR SINE MIR 0 262 32 228 305 11 21 chr6 62525762 62525857 -126753697 + LTR67 LTR ERVL 460 553 -4 26 39 0 20 chr6 62526879 62526909 -126752645 + AT_rich Low_complexity Low_complexity 1 31 -19 1362 245 14 0 chr6 62526909 62527195 -126752359 - AluJo SINE Alu -22 290 1 26 39 0 20 chr6 62527195 62527215 -126752339 + AT_rich Low_complexity Low_complexity 31 50 0 1943 226 18 18 chr6 62527258 62527772 -126751782 + L1MC1 LINE L1 4670 5183 -963 5455 157 28 18 chr6 62527775 62529396 -126750158 + L1PA13 LINE L1 4519 6159 -4 * 5951 168 16 6 chr6 62529387 62530549 -126749005 + L1MC1 LINE L1 5156 6328 -5 21 71 0 0 chr6 62530631 62530673 -126748881 + AT_rich Low_complexity Low_complexity 1 42 0 377 272 48 0 chr6 62530742 62530867 -126748687 - L1MC4a LINE L1 -1965 5843 5713 572 106 11 0 chr6 62530937 62531031 -126748523 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 661 259 41 48 chr6 62531381 62531674 -126747880 - HAL1 LINE L1 -722 1785 1495 776 311 105 40 chr6 62531775 62532529 -126747025 - HAL1 LINE L1 -1172 1335 319 188 391 66 13 chr6 62532940 62533091 -126746463 - MER5A DNA MER1_type -30 159 1 25 99 0 0 chr6 62533768 62533849 -126745705 + AT_rich Low_complexity Low_complexity 1 81 0 27 49 0 0 chr6 62533883 62533924 -126745630 + AT_rich Low_complexity Low_complexity 1 41 0 205 179 0 0 chr6 62534132 62534171 -126745383 + T-rich Low_complexity Low_complexity 3 41 0 185 246 70 18 chr6 62536365 62536422 -126743132 + L3 LINE CR1 1380 1439 -138 3374 133 36 19 chr6 62538270 62538885 -126740669 - L1MA9 LINE L1 0 6312 5688 30 27 0 0 chr6 62539008 62539045 -126740509 + AT_rich Low_complexity Low_complexity 1 37 0 1959 123 7 0 chr6 62539313 62539627 -126739927 - AluSg1 SINE Alu 0 316 1 690 234 32 83 chr6 62540961 62541239 -126738315 + MLT1C LTR MaLR 158 421 -46 216 311 14 14 chr6 62543586 62543660 -126735894 + MIR SINE MIR 76 149 -113 22 0 0 0 chr6 62544313 62544335 -126735219 + AT_rich Low_complexity Low_complexity 1 22 0 808 175 0 0 chr6 62544337 62544463 -126735091 - FLAM_C SINE Alu -7 126 1 1589 132 53 18 chr6 62545181 62545462 -126734092 + L1PA16 LINE L1 5876 6166 0 291 224 8 16 chr6 62546616 62546741 -126732813 + (TA)n Simple_repeat Simple_repeat 2 125 0 22 35 0 0 chr6 62546874 62546903 -126732651 + AT_rich Low_complexity Low_complexity 1 29 0 968 241 108 7 chr6 62547767 62548053 -126731501 - MER46C DNA MER2_type 0 338 24 21 0 0 0 chr6 62548170 62548191 -126731363 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr6 62548295 62548351 -126731203 + AT_rich Low_complexity Low_complexity 1 56 0 26 30 0 0 chr6 62548448 62548481 -126731073 + AT_rich Low_complexity Low_complexity 1 33 0 354 248 9 28 chr6 62548765 62548874 -126730680 + GA-rich Low_complexity Low_complexity 3 109 0 271 284 0 0 chr6 62549578 62549645 -126729909 + GA-rich Low_complexity Low_complexity 4 70 0 21 0 0 0 chr6 62550611 62550632 -126728922 + AT_rich Low_complexity Low_complexity 1 21 0 222 345 36 12 chr6 62551206 62551290 -126728264 + MIR3 SINE MIR 10 95 -113 287 314 143 9 chr6 62551346 62551451 -126728103 + MIR3 SINE MIR 82 200 -8 386 276 123 12 chr6 62552125 62552295 -126727259 + MIR3 SINE MIR 13 201 -7 660 265 77 5 chr6 62557564 62557760 -126721794 - MIR SINE MIR 0 262 53 331 371 107 0 chr6 62558180 62558339 -126721215 + MIR3 SINE MIR 20 195 -13 305 303 15 53 chr6 62558762 62558894 -126720660 - MIR SINE MIR -50 212 86 1562 185 99 0 chr6 62559546 62559859 -126719695 + MER7A DNA MER2_type 5 346 0 180 0 0 0 chr6 62559886 62559906 -126719648 + (A)n Simple_repeat Simple_repeat 1 20 0 2351 86 0 0 chr6 62560929 62561230 -126718324 + AluSg SINE Alu 1 301 -9 180 237 0 0 chr6 62561412 62561450 -126718104 + MIR SINE MIR 58 95 -167 1795 94 4 0 chr6 62561556 62561790 -126717764 - AluSg/x SINE Alu 0 310 76 359 102 0 0 chr6 62561800 62561849 -126717705 - AluSq/x SINE Alu -176 126 78 1003 249 75 73 chr6 62563469 62563978 -126715576 + MER67D LTR ERV1 1 510 -4 9031 241 47 44 chr6 62564033 62566444 -126713110 + L1ME2 LINE L1 58 2461 -4079 2183 107 0 10 chr6 62566444 62566742 -126712812 + AluY SINE Alu 1 295 -16 9031 241 47 44 chr6 62566742 62568111 -126711443 + L1ME2 LINE L1 2461 3825 -2715 2261 85 7 13 chr6 62568111 62568418 -126711136 + AluY SINE Alu 1 305 -6 9031 241 47 44 chr6 62568418 62570313 -126709241 + L1ME2 LINE L1 3825 5749 -791 1933 197 2 2 chr6 62570309 62570761 -126708793 + L1P LINE L1 4941 5392 -759 * 1502 108 0 33 chr6 62570761 62571087 -126708467 + L1PB1 LINE L1 5171 5488 -663 42716 50 2 1 chr6 62571091 62577229 -126702325 + L1PA4 LINE L1 7 6152 -3 4249 129 9 7 chr6 62577247 62577920 -126701634 + L1PB1 LINE L1 5476 6149 -2 1302 251 74 18 chr6 62577930 62578376 -126701178 + L1ME2 LINE L1 5759 6229 -331 361 108 0 95 chr6 62578376 62578524 -126701030 + (TA)n Simple_repeat Simple_repeat 2 135 0 743 239 45 67 chr6 62578526 62578857 -126700697 + L1ME2 LINE L1 6226 6549 -9 257 198 99 50 chr6 62578879 62578980 -126700574 + L1MCc LINE L1 19 124 -6299 1523 282 79 34 chr6 62579149 62580415 -126699139 + L1MCc LINE L1 799 2123 -4818 1082 271 93 29 chr6 62580492 62581221 -126698333 + L1MCc LINE L1 2752 3485 -3456 16349 51 107 7 chr6 62581240 62584612 -126694942 - L1PA5 LINE L1 -8 6146 2193 590 243 74 10 chr6 62584612 62584866 -126694688 - MLT1E1 LTR MaLR -333 293 53 2858 241 39 76 chr6 62584932 62585523 -126694031 + L1MCc LINE L1 4137 4749 -2192 378 0 0 0 chr6 62585523 62585565 -126693989 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2858 241 39 76 chr6 62585565 62585936 -126693618 + L1MCc LINE L1 4749 5030 -1911 932 111 11 44 chr6 62585936 62586116 -126693438 + L1MA8 LINE L1 6106 6279 -12 2858 241 39 76 chr6 62586116 62586578 -126692976 + L1MCc LINE L1 5030 5508 -1433 532 159 0 26 chr6 62586577 62586690 -126692864 + L1MA9 LINE L1 6026 6135 -177 * 561 197 14 7 chr6 62586700 62586842 -126692712 + GA-rich Low_complexity Low_complexity 1 143 0 1494 133 12 4 chr6 62587523 62587763 -126691791 - L1MA4 LINE L1 -355 5945 5704 1252 130 9 9 chr6 62587763 62587977 -126691577 + L1MA5 LINE L1 6083 6297 -3 387 350 55 5 chr6 62587980 62588180 -126691374 + MIR SINE MIR 53 262 0 261 273 13 13 chr6 62590295 62590372 -126689182 - HAL1 LINE L1 -1674 833 757 519 312 39 24 chr6 62592188 62592393 -126687161 + MLT1J2 LTR MaLR 241 448 -2 24 32 0 0 chr6 62592511 62592542 -126687012 + AT_rich Low_complexity Low_complexity 1 31 0 1788 148 13 0 chr6 62593972 62594276 -126685278 + L1PB4 LINE L1 5846 6153 -3 2357 74 0 3 chr6 62594296 62594593 -126684961 + AluY SINE Alu 1 296 -15 2882 78 0 0 chr6 62594863 62595237 -126684317 - L1PA6 LINE L1 -11 6143 5770 29814 70 1 5 chr6 62595249 62600015 -126679539 - L1HS LINE L1 0 6155 1411 2199 137 44 0 chr6 62600162 62600505 -126679049 + THE1B LTR MaLR 5 362 -2 9980 117 32 36 chr6 62600507 62602094 -126677460 + THE1B-int LTR MaLR 1 1580 0 2424 150 0 0 chr6 62602094 62602455 -126677099 + THE1B LTR MaLR 1 361 -3 287 365 95 69 chr6 62602487 62603464 -126676090 - L2 LINE L2 -2194 1120 118 269 252 112 42 chr6 62605714 62605857 -126673697 + L3b LINE CR1 1184 1336 -247 2066 182 34 19 chr6 62606111 62606528 -126673026 + MSTB LTR MaLR 4 426 0 636 228 69 90 chr6 62606666 62606899 -126672655 - MLT1J1 LTR MaLR -14 432 205 188 35 35 0 chr6 62607732 62607761 -126671793 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 180 229 164 16 chr6 62607828 62607889 -126671665 + L2 LINE L2 3244 3313 0 283 370 50 0 chr6 62608946 62609046 -126670508 - L2 LINE L2 -14 3258 3154 28 29 0 0 chr6 62609254 62609289 -126670265 + AT_rich Low_complexity Low_complexity 1 35 0 359 254 131 16 chr6 62609355 62609477 -126670077 - MER5A DNA MER1_type -3 186 51 269 195 179 49 chr6 62609377 62609500 -126670054 + MER5A DNA MER1_type 35 173 -16 * 195 42 0 0 chr6 62609632 62609656 -126669898 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 2710 179 36 46 chr6 62609743 62610356 -126669198 + L1MB3 LINE L1 5572 6178 -5 21 0 0 0 chr6 62611148 62611169 -126668385 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 62611226 62611253 -126668301 + AT_rich Low_complexity Low_complexity 1 27 0 383 253 84 0 chr6 62611903 62611998 -126667556 + L2 LINE L2 3169 3271 -1 22 35 0 0 chr6 62613236 62613265 -126666289 + AT_rich Low_complexity Low_complexity 1 29 0 261 295 77 0 chr6 62613846 62613924 -126665630 + L2 LINE L2 3210 3293 -20 1865 51 0 0 chr6 62614434 62614668 -126664886 - L1PA4 LINE L1 -3 6152 5919 253 347 24 32 chr6 62615099 62615223 -126664331 + MER5A DNA MER1_type 45 167 -22 241 337 69 29 chr6 62615301 62615476 -126664078 + MIR SINE MIR 39 220 -42 2151 122 0 7 chr6 62616560 62616864 -126662690 + AluSq SINE Alu 1 302 -11 344 143 12 0 chr6 62617201 62617285 -126662269 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 291 28 0 0 chr6 62617295 62617331 -126662223 + (CA)n Simple_repeat Simple_repeat 1 36 0 554 278 92 112 chr6 62617362 62617642 -126661912 + MLT1J2 LTR MaLR 5 274 -176 914 186 116 40 chr6 62617642 62617943 -126661611 - MER33 DNA MER1_type 0 324 1 554 278 92 112 chr6 62617943 62618116 -126661438 + MLT1J2 LTR MaLR 274 449 -1 2003 153 3 0 chr6 62618292 62618599 -126660955 + AluJb SINE Alu 1 308 -4 230 323 153 8 chr6 62619082 62619206 -126660348 - MIR SINE MIR -72 190 49 527 252 36 7 chr6 62619717 62619856 -126659698 + MLT1I LTR MaLR 1 143 -266 1991 133 0 10 chr6 62620045 62620339 -126659215 + AluSx SINE Alu 1 291 -21 628 306 124 30 chr6 62620975 62621036 -126658518 - MLT1I LTR MaLR -2 407 353 982 220 41 14 chr6 62621036 62621254 -126658300 + MER58A DNA MER1_type 1 224 0 628 306 124 30 chr6 62621254 62621555 -126657999 - MLT1I LTR MaLR -56 353 11 355 206 164 27 chr6 62621607 62621753 -126657801 - L1MA10 LINE L1 0 6334 6169 827 231 71 9 chr6 62621753 62622077 -126657477 - L1M4 LINE L1 -1652 4494 4151 * 1002 270 33 13 chr6 62622071 62622467 -126657087 - L1M4 LINE L1 -2701 3445 3042 623 280 52 47 chr6 62622514 62622918 -126656636 + HsTC2 DNA Tc2 1318 1899 0 768 237 35 12 chr6 62623519 62623692 -126655862 + MER97b DNA MER1_type? 1 177 -876 206 354 193 0 chr6 62624959 62625015 -126654539 - MIR SINE MIR -27 235 191 2176 119 3 0 chr6 62625015 62625310 -126654244 - AluSq SINE Alu -17 296 1 206 354 193 0 chr6 62625310 62625414 -126654140 - MIR SINE MIR -71 191 44 257 217 19 38 chr6 62625618 62625724 -126653830 + (TTATA)n Simple_repeat Simple_repeat 5 108 0 894 286 92 63 chr6 62625730 62626255 -126653299 - L2 LINE L2 -32 3281 2735 326 359 23 30 chr6 62626300 62626431 -126653123 - L2 LINE L2 -566 2748 2619 727 248 33 70 chr6 62626433 62626548 -126653006 + L1M4 LINE L1 4878 4996 -1150 1520 157 48 54 chr6 62626548 62626842 -126652712 + AluJo SINE Alu 1 292 -20 727 248 33 70 chr6 62626842 62627096 -126652458 + L1M4 LINE L1 4996 5235 -911 878 62 44 6 chr6 62627096 62627256 -126652298 + (TAGA)n Simple_repeat Simple_repeat 1 166 0 727 248 33 70 chr6 62627256 62627322 -126652232 + L1M4 LINE L1 5235 5302 -844 631 237 79 7 chr6 62627322 62627474 -126652080 - MLT1E LTR MaLR -430 163 1 803 231 77 80 chr6 62627488 62627826 -126651728 - L1MC4a LINE L1 -1881 5927 5591 268 295 57 8 chr6 62627871 62627993 -126651561 - L1MC4a LINE L1 -2363 5445 5318 1994 120 7 39 chr6 62628019 62628328 -126651226 - AluSx SINE Alu -13 299 1 277 130 19 0 chr6 62628635 62628689 -126650865 - L1MC/D LINE L1 -1979 5829 5775 * 327 264 142 10 chr6 62628682 62628939 -126650615 + L1 LINE L1 3654 3952 -2194 361 275 17 25 chr6 62629904 62630024 -126649530 - L2 LINE L2 -50 3263 3145 1400 202 19 0 chr6 62630033 62630300 -126649254 + AluJo SINE Alu 20 291 -21 192 125 0 0 chr6 62631361 62631393 -126648161 + (CATATA)n Simple_repeat Simple_repeat 3 34 0 299 296 134 48 chr6 62632261 62632447 -126647107 + MIR3 SINE MIR 6 207 -1 240 295 74 32 chr6 62632654 62632749 -126646805 + L2 LINE L2 3116 3214 -58 2764 273 159 27 chr6 62632795 62633843 -126645711 + L2 LINE L2 1174 2082 -1231 1432 166 50 28 chr6 62633843 62634126 -126645428 - AluJo SINE Alu -23 289 1 2764 273 159 27 chr6 62634126 62634443 -126645111 + L2 LINE L2 2082 2356 -957 2138 136 3 0 chr6 62634443 62634753 -126644801 + AluSp SINE Alu 1 311 -2 2764 273 159 27 chr6 62634753 62635101 -126644453 + L2 LINE L2 2356 3115 -198 200 222 0 0 chr6 62635111 62635156 -126644398 + L2 LINE L2 3268 3312 -1 27 29 0 0 chr6 62635631 62635665 -126643889 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr6 62635859 62635884 -126643670 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 62635924 62635946 -126643608 + AT_rich Low_complexity Low_complexity 1 22 0 201 196 0 0 chr6 62637333 62637384 -126642170 + (TG)n Simple_repeat Simple_repeat 2 52 0 567 213 12 0 chr6 62637709 62637955 -126641599 + (CCA)n Simple_repeat Simple_repeat 1 249 0 718 283 36 14 chr6 62638850 62639073 -126640481 + MIR SINE MIR 18 245 -17 330 224 56 48 chr6 62639488 62639613 -126639941 - MLT1I LTR MaLR -279 130 5 1530 160 36 7 chr6 62641134 62641409 -126638145 - AluSx SINE Alu -9 303 21 1504 126 0 5 chr6 62641783 62642005 -126637549 + AluSc SINE Alu 83 303 -6 232 281 12 24 chr6 62642351 62642433 -126637121 + LTR67 LTR ERVL 477 557 0 291 159 0 63 chr6 62642581 62642644 -126636910 + MADE1 DNA Mariner 1 59 -21 617 251 91 26 chr6 62643078 62643309 -126636245 - MLT1J LTR MaLR -250 261 16 1321 154 38 58 chr6 62643751 62644193 -126635361 - L1MC2 LINE L1 -2 6342 5860 3010 153 19 51 chr6 62644232 62644801 -126634753 - L1MA8 LINE L1 0 6291 5741 317 280 57 81 chr6 62644944 62645155 -126634399 - MER76 LTR ERV -42 646 441 805 212 7 7 chr6 62645216 62645367 -126634187 - MER76 LTR ERV -516 172 22 437 248 88 0 chr6 62645863 62645988 -126633566 + MLT1J LTR MaLR 22 157 -354 375 327 1 42 chr6 62646681 62646841 -126632713 - MLT1H1 LTR MaLR -402 153 2 21 0 0 0 chr6 62646981 62647002 -126632552 + AT_rich Low_complexity Low_complexity 1 21 0 522 142 88 53 chr6 62648535 62648648 -126630906 + FRAM SINE Alu 59 175 -1 2016 125 54 0 chr6 62648726 62649022 -126630532 + AluSq SINE Alu 1 312 -1 329 339 85 0 chr6 62649022 62649187 -126630367 - MIR3 SINE MIR -11 197 19 24 0 0 0 chr6 62650197 62650221 -126629333 + AT_rich Low_complexity Low_complexity 1 24 0 225 65 0 0 chr6 62651143 62651174 -126628380 + (TG)n Simple_repeat Simple_repeat 1 31 0 388 204 38 31 chr6 62651817 62651956 -126627598 + MLT1J2 LTR MaLR 294 385 -24 1145 140 115 8 chr6 62652066 62652309 -126627245 - MER33 DNA MER1_type -8 316 48 2237 264 58 0 chr6 62652309 62652880 -126626674 - MER90 LTR ERV1 0 614 11 1299 189 74 32 chr6 62652899 62653211 -126626343 - MLT1B LTR MaLR 0 390 66 262 226 16 0 chr6 62653248 62653310 -126626244 - MER3 DNA MER1_type -112 97 35 848 123 0 0 chr6 62654499 62654613 -126624941 + AluSq/x SINE Alu 1 114 -198 248 215 333 0 chr6 62655129 62655222 -126624332 + L2 LINE L2 3174 3297 -16 196 250 0 0 chr6 62655188 62655228 -126624326 + MIR SINE MIR 219 258 -4 * 1381 84 6 0 chr6 62655244 62655423 -126624131 + AluY SINE Alu 120 299 -12 198 0 0 0 chr6 62656809 62656831 -126622723 + (A)n Simple_repeat Simple_repeat 1 22 0 294 145 24 36 chr6 62657178 62657261 -126622293 + GA-rich Low_complexity Low_complexity 1 82 0 397 219 192 7 chr6 62657653 62657799 -126621755 - MIR SINE MIR 0 262 90 429 228 28 69 chr6 62658520 62658665 -126620889 + MIR SINE MIR 118 256 -6 182 238 0 129 chr6 62658683 62658784 -126620770 + MIR SINE MIR 124 211 -51 1382 45 6 0 chr6 62659452 62659630 -126619924 + (GAA)n Simple_repeat Simple_repeat 2 180 0 1988 74 74 18 chr6 62659743 62660026 -126619528 + AluSg SINE Alu 1 299 -11 248 226 19 19 chr6 62661195 62661301 -126618253 + GA-rich Low_complexity Low_complexity 3 108 0 293 48 32 32 chr6 62662271 62662333 -126617221 + (CA)n Simple_repeat Simple_repeat 2 63 0 180 0 0 0 chr6 62665332 62665352 -126614202 + (T)n Simple_repeat Simple_repeat 1 20 0 294 95 0 0 chr6 62665368 62665410 -126614144 + (CGG)n Simple_repeat Simple_repeat 2 43 0 324 83 0 0 chr6 62666031 62666079 -126613475 + (TG)n Simple_repeat Simple_repeat 1 48 0 358 20 39 0 chr6 62666926 62666977 -126612577 + (TC)n Simple_repeat Simple_repeat 2 54 0 279 0 0 0 chr6 62666977 62667008 -126612546 + (CA)n Simple_repeat Simple_repeat 1 31 0 384 167 0 0 chr6 62667663 62667735 -126611819 + GA-rich Low_complexity Low_complexity 3 74 0 218 240 13 13 chr6 62668860 62668935 -126610619 + (TA)n Simple_repeat Simple_repeat 1 75 0 578 71 0 12 chr6 62670646 62670731 -126608823 + (GAAA)n Simple_repeat Simple_repeat 4 87 0 480 35 0 0 chr6 62671714 62671772 -126607782 + (CA)n Simple_repeat Simple_repeat 2 59 0 367 301 187 0 chr6 62678704 62678827 -126600727 - MER5A DNA MER1_type 0 189 44 513 301 46 23 chr6 62681903 62682076 -126597478 + MER5B DNA MER1_type 2 178 0 231 36 0 0 chr6 62682674 62682702 -126596852 + (CA)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr6 62684078 62684101 -126595453 + AT_rich Low_complexity Low_complexity 1 23 0 330 26 0 0 chr6 62685208 62685247 -126594307 + (TG)n Simple_repeat Simple_repeat 2 40 0 255 279 15 0 chr6 62685532 62685600 -126593954 + MIR SINE MIR 86 154 -108 607 286 112 49 chr6 62685612 62685961 -126593593 - MLT1J2 LTR MaLR -10 440 70 480 303 112 11 chr6 62686182 62686370 -126593184 + MIR SINE MIR 28 234 -28 233 302 104 47 chr6 62686372 62686478 -126593076 - MIR SINE MIR -64 144 33 1380 181 50 20 chr6 62688194 62688493 -126591061 - AluJb SINE Alu 0 312 5 838 304 45 21 chr6 62688843 62689264 -126590290 - L1MC4a LINE L1 -1848 5960 5530 514 309 47 94 chr6 62689417 62689887 -126589667 - L1MC4a LINE L1 -816 5330 4883 312 257 164 33 chr6 62690203 62690302 -126589252 - MER5B DNA MER1_type 0 178 93 3584 43 0 2 chr6 62690302 62690742 -126588812 - L1PA5 LINE L1 -3 6151 5713 312 257 164 33 chr6 62690742 62690794 -126588760 - MER5B DNA MER1_type -85 93 7 326 333 0 0 chr6 62691004 62691085 -126588469 - L2 LINE L2 -5 3267 3187 2021 115 0 21 chr6 62691651 62691964 -126587590 - AluSg1 SINE Alu 0 307 1 27 81 0 0 chr6 62692297 62692359 -126587195 + AT_rich Low_complexity Low_complexity 1 62 0 1946 123 10 0 chr6 62692509 62692809 -126586745 - L1PA13 LINE L1 0 6163 5861 225 65 0 0 chr6 62692809 62692840 -126586714 + L1P4 LINE L1 5594 5624 -544 661 109 8 17 chr6 62693754 62693873 -126585681 + (TAGA)n Simple_repeat Simple_repeat 3 120 0 369 0 0 0 chr6 62694182 62694223 -126585331 + (CA)n Simple_repeat Simple_repeat 2 42 0 1460 176 4 16 chr6 62694583 62694882 -126584672 - AluJb SINE Alu 0 326 31 2294 121 46 3 chr6 62695275 62695648 -126583906 - L1PA15 LINE L1 -3 6162 5774 1657 184 0 3 chr6 62697455 62697765 -126581789 - AluJb SINE Alu 0 309 1 21 57 0 0 chr6 62699612 62699647 -126579907 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr6 62700225 62700249 -126579305 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 62700404 62700425 -126579129 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 62700625 62700656 -126578898 + AT_rich Low_complexity Low_complexity 1 31 0 1660 192 24 35 chr6 62702656 62703025 -126576529 - MLT1A1 LTR MaLR 0 365 1 541 15 0 0 chr6 62703388 62703453 -126576101 + L1PA3 LINE L1 6088 6152 -3 288 295 52 62 chr6 62704021 62704214 -126575340 + MIR SINE MIR 17 207 -55 4433 186 69 5 chr6 62705194 62705560 -126573994 - L1MB2 LINE L1 0 6171 5830 282 95 0 0 chr6 62705560 62705602 -126573952 + (TG)n Simple_repeat Simple_repeat 1 42 0 4433 186 69 5 chr6 62705602 62706401 -126573153 - L1MB2 LINE L1 -341 5830 4936 307 301 33 104 chr6 62706615 62706798 -126572756 - MER5B DNA MER1_type -6 172 3 503 206 0 0 chr6 62706932 62707029 -126572525 + AluJo SINE Alu 40 136 -176 1271 203 86 10 chr6 62707101 62707391 -126572163 - AluJb SINE Alu 0 312 1 378 191 62 0 chr6 62708471 62708633 -126570921 + (TA)n Simple_repeat Simple_repeat 1 172 0 393 120 64 9 chr6 62708652 62709075 -126570479 + (TA)n Simple_repeat Simple_repeat 1 445 0 370 282 229 24 chr6 62709467 62709839 -126569715 - L3 LINE CR1 -7 1570 1123 711 111 0 34 chr6 62710078 62710195 -126569359 - MER31A LTR ERV1 -372 113 1 297 371 46 13 chr6 62710500 62710651 -126568903 + MIR3 SINE MIR 39 194 -14 236 245 31 71 chr6 62711227 62711325 -126568229 - MER103 DNA DNA -1 165 72 549 246 8 30 chr6 62711577 62711711 -126567843 + MER5B DNA MER1_type 46 176 -2 188 159 0 23 chr6 62713591 62713635 -126565919 + (CA)n Simple_repeat Simple_repeat 1 43 0 225 108 0 0 chr6 62714074 62714111 -126565443 + (GA)n Simple_repeat Simple_repeat 2 38 0 1089 325 62 35 chr6 62714227 62714855 -126564699 - L3 LINE CR1 -671 906 262 1323 241 84 8 chr6 62714856 62715225 -126564329 + L1ME1 LINE L1 5765 6161 -5 21 0 0 0 chr6 62715266 62715287 -126564267 + AT_rich Low_complexity Low_complexity 1 21 0 350 209 0 0 chr6 62715729 62715796 -126563758 + L1PB4 LINE L1 6088 6154 -2 2664 132 35 37 chr6 62716002 62716510 -126563044 - L1MA9 LINE L1 -5 6307 5801 6369 172 29 29 chr6 62716517 62717878 -126561676 - L1MA9 LINE L1 -581 5731 4367 2830 19 0 0 chr6 62717878 62718195 -126561359 - AluYb8 SINE Alu -1 317 1 6369 172 29 29 chr6 62718195 62718576 -126560978 - L1MA9 LINE L1 -1945 4367 3987 738 268 0 0 chr6 62719561 62719725 -126559829 - FRAM SINE Alu -2 164 1 2022 103 41 17 chr6 62720131 62720421 -126559133 - AluSg SINE Alu -13 297 1 180 306 0 16 chr6 62720500 62720562 -126558992 - MIR3 SINE MIR -13 195 135 625 256 43 0 chr6 62721002 62721166 -126558388 + MIR SINE MIR 90 260 -2 26 0 0 0 chr6 62721924 62721950 -126557604 + AT_rich Low_complexity Low_complexity 1 26 0 276 208 0 0 chr6 62722417 62722470 -126557084 - MLT1J LTR MaLR -53 458 406 517 267 76 12 chr6 62722551 62722723 -126556831 - MLT1J LTR MaLR -315 196 14 5964 34 7 0 chr6 62722905 62723622 -126555932 + L1PA5 LINE L1 5424 6145 -9 21 0 0 0 chr6 62723622 62723643 -126555911 + AT_rich Low_complexity Low_complexity 1 21 0 213 230 0 0 chr6 62724212 62724286 -126555268 + A-rich Low_complexity Low_complexity 1 74 0 26 0 0 0 chr6 62726678 62726704 -126552850 + AT_rich Low_complexity Low_complexity 1 26 0 2200 97 13 3 chr6 62726854 62727152 -126552402 + AluSq SINE Alu 3 303 -10 213 175 0 0 chr6 62727842 62727882 -126551672 + (TA)n Simple_repeat Simple_repeat 2 41 0 874 273 24 16 chr6 62727955 62728204 -126551350 + MIR SINE MIR 11 261 -1 204 281 47 16 chr6 62728263 62728327 -126551227 - L2 LINE L2 -21 3292 3227 2147 129 3 0 chr6 62728900 62729210 -126550344 - AluSx SINE Alu -1 311 1 262 267 61 78 chr6 62729680 62729860 -126549694 - LTR50 LTR ERVL -111 684 508 293 219 162 45 chr6 62730002 62730141 -126549413 - LTR50 LTR ERVL -352 189 52 324 308 66 30 chr6 62730781 62730847 -126548707 + MLT1J1 LTR MaLR 3 65 -381 1201 205 5 9 chr6 62730847 62731071 -126548483 - MER58A DNA MER1_type -1 223 1 324 308 66 30 chr6 62731071 62731213 -126548341 + MLT1J1 LTR MaLR 65 216 -230 677 217 32 90 chr6 62731236 62731425 -126548129 - MER20 DNA MER1_type 0 219 42 250 273 0 0 chr6 62731454 62731520 -126548034 + MLT1J2 LTR MaLR 266 331 -119 520 296 72 96 chr6 62731647 62731929 -126547625 + L2 LINE L2 2262 2549 -723 1967 145 0 3 chr6 62731929 62732232 -126547322 + AluSx SINE Alu 1 302 -10 520 296 72 96 chr6 62732232 62732740 -126546814 + L2 LINE L2 2549 3031 -241 1767 248 72 38 chr6 62732753 62733310 -126546244 - MLT1E2 LTR MaLR 0 626 51 2699 45 0 0 chr6 62733426 62733760 -126545794 - L1PA4 LINE L1 -1 6154 5821 3012 44 0 0 chr6 62733761 62734123 -126545431 + L1PA4 LINE L1 5451 5812 -343 2228 112 0 3 chr6 62734195 62734498 -126545056 - AluSx SINE Alu -10 302 1 575 266 22 0 chr6 62734570 62734709 -126544845 + MIR SINE MIR 119 260 -2 292 258 0 0 chr6 62735865 62735927 -126543627 - L2 LINE L2 0 3313 3252 1149 177 0 0 chr6 62736311 62736486 -126543068 + FAM SINE Alu 1 175 0 1112 189 11 0 chr6 62736712 62736903 -126542651 - MER20 DNA MER1_type -4 215 23 473 274 43 30 chr6 62737451 62737615 -126541939 + MLT1H LTR MaLR 382 547 -2 1057 172 0 17 chr6 62737864 62738038 -126541516 + AluJo SINE Alu 1 171 -141 207 125 0 0 chr6 62738040 62738080 -126541474 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 528 16 0 0 chr6 62738098 62738159 -126541395 + (TA)n Simple_repeat Simple_repeat 1 61 0 232 280 194 0 chr6 62738214 62738307 -126541247 - L2 LINE L2 -1 3312 3202 517 277 45 39 chr6 62738440 62738595 -126540959 + MIR SINE MIR 83 238 -24 406 306 189 5 chr6 62738622 62738818 -126540736 + MIR SINE MIR 12 243 -19 240 314 78 76 chr6 62738887 62739246 -126540308 - L2 LINE L2 -192 3080 2708 21 82 0 0 chr6 62739903 62739952 -126539602 + AT_rich Low_complexity Low_complexity 1 49 0 32 0 0 0 chr6 62739964 62739996 -126539558 + AT_rich Low_complexity Low_complexity 1 32 0 2356 220 54 16 chr6 62740517 62741017 -126538537 + LTR40a LTR ERVL 1 519 0 199 287 103 0 chr6 62741079 62741166 -126538388 + L2 LINE L2 3217 3312 -1 417 259 29 22 chr6 62741505 62741644 -126537910 + L2 LINE L2 2920 3059 -213 194 375 0 0 chr6 62743869 62743933 -126535621 + MIR SINE MIR 84 147 -115 182 279 0 127 chr6 62744266 62744345 -126535209 + MIR SINE MIR 16 84 -178 623 280 16 44 chr6 62744377 62744559 -126534995 - MIR SINE MIR -84 178 2 241 350 98 21 chr6 62744559 62744710 -126534844 + MIR SINE MIR 94 262 0 266 340 10 0 chr6 62744808 62744911 -126534643 - MIR3 SINE MIR -15 193 90 288 288 85 85 chr6 62745308 62745485 -126534069 + MER5A DNA MER1_type 11 187 -2 492 158 0 0 chr6 62745621 62745716 -126533838 + CT-rich Low_complexity Low_complexity 2 96 0 2219 113 3 6 chr6 62747065 62747376 -126532178 + AluSg SINE Alu 1 310 0 374 92 175 1 chr6 62747457 62747535 -126532019 - L1MA4A LINE L1 -169 6126 6032 436 229 0 69 chr6 62747628 62747759 -126531795 - L2 LINE L2 0 3313 3192 1479 182 0 20 chr6 62747910 62748163 -126531391 + AluJo SINE Alu 1 248 -64 1301 156 66 56 chr6 62748207 62748509 -126531045 + L1MA3 LINE L1 6001 6305 0 739 283 101 68 chr6 62749464 62749486 -126530068 - MLT1J LTR MaLR -3 508 488 2810 7 0 0 chr6 62749486 62749787 -126529767 + AluY SINE Alu 1 301 -10 739 283 101 68 chr6 62749787 62750160 -126529394 - MLT1J LTR MaLR -23 488 100 255 189 0 0 chr6 62750400 62750453 -126529101 - L1MC4 LINE L1 -64 7978 7926 1035 233 146 3 chr6 62750457 62750800 -126528754 - L1MC4 LINE L1 -154 7888 7497 710 212 50 17 chr6 62750808 62750987 -126528567 + L1MC4 LINE L1 7313 7497 -545 6215 88 29 10 chr6 62752158 62752813 -126526741 - L1PA10 LINE L1 -9 6159 5488 2472 80 0 3 chr6 62752813 62753124 -126526430 - AluSq SINE Alu -3 310 1 6215 88 29 10 chr6 62753124 62753352 -126526202 - L1PA10 LINE L1 -680 5488 5266 2796 9 0 28 chr6 62753471 62753788 -126525766 - AluYb8 SINE Alu -10 308 1 218 231 51 51 chr6 62754623 62754701 -126524853 + MIR SINE MIR 185 262 0 487 267 57 74 chr6 62755184 62755360 -126524194 + MIR3 SINE MIR 21 193 -15 891 209 41 50 chr6 62755674 62755894 -126523660 - MER20 DNA MER1_type 0 219 2 243 297 0 51 chr6 62755927 62756045 -126523509 + CT-rich Low_complexity Low_complexity 3 114 0 352 330 48 40 chr6 62756145 62756372 -126523182 + MIR SINE MIR 32 260 -2 2125 138 51 36 chr6 62757554 62757910 -126521644 + THE1B LTR MaLR 1 361 -3 321 26 0 0 chr6 62757911 62757949 -126521605 + (CA)n Simple_repeat Simple_repeat 1 38 0 1802 88 4 0 chr6 62758008 62758234 -126521320 + AluSp SINE Alu 1 227 -86 26 0 0 0 chr6 62758306 62758332 -126521222 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr6 62758348 62758370 -126521184 + AT_rich Low_complexity Low_complexity 1 22 0 433 311 91 26 chr6 62759001 62759265 -126520289 - L3 LINE CR1 -2 1575 1295 261 284 15 15 chr6 62759294 62759361 -126520193 - L2 LINE L2 -38 3234 3168 687 336 55 68 chr6 62759361 62759509 -126520045 - L3 LINE CR1 -284 1293 1145 1465 168 0 87 chr6 62759509 62759819 -126519735 - AluJo SINE Alu -7 305 23 687 336 55 68 chr6 62759819 62760450 -126519104 - L3 LINE CR1 -432 1145 524 205 370 31 8 chr6 62760470 62760597 -126518957 - MIR SINE MIR -9 253 124 10552 75 17 8 chr6 62760677 62762049 -126517505 - SVA Other Other -2 1384 1 242 330 34 0 chr6 62762053 62762141 -126517413 - MIR SINE MIR -157 105 15 439 321 79 63 chr6 62762197 62762453 -126517101 - L3 LINE CR1 -1110 467 200 1591 165 0 65 chr6 62762453 62762775 -126516779 - AluSx SINE Alu -11 301 1 439 321 79 63 chr6 62762775 62762963 -126516591 - L3 LINE CR1 -1377 200 16 1644 207 33 18 chr6 62763003 62763158 -126516396 + MLT1A1 LTR MaLR 3 154 -211 1714 130 12 84 chr6 62763158 62763481 -126516073 + AluSx SINE Alu 1 300 -12 1644 207 33 18 chr6 62763481 62763658 -126515896 + MLT1A1 LTR MaLR 154 340 -25 1674 171 10 29 chr6 62764053 62764363 -126515191 + AluJo SINE Alu 1 304 -8 2034 130 3 0 chr6 62764449 62764733 -126514821 - AluSq SINE Alu -14 299 15 325 323 10 10 chr6 62764734 62764830 -126514724 - MIR3 SINE MIR -49 159 64 204 250 0 0 chr6 62768362 62768426 -126511128 + GA-rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr6 62768549 62768570 -126510984 + AT_rich Low_complexity Low_complexity 1 21 0 213 246 15 77 chr6 62770333 62770398 -126509156 - L2 LINE L2 -244 3069 3009 201 100 100 0 chr6 62771034 62771124 -126508430 + (CGAGG)n Simple_repeat Simple_repeat 4 102 0 288 192 14 27 chr6 62771668 62771741 -126507813 + GA-rich Low_complexity Low_complexity 5 76 0 282 210 48 0 chr6 62772080 62772204 -126507350 + GA-rich Low_complexity Low_complexity 1 130 0 21 0 0 0 chr6 62773216 62773237 -126506317 + AT_rich Low_complexity Low_complexity 1 21 0 236 253 12 0 chr6 62773423 62773506 -126506048 + CT-rich Low_complexity Low_complexity 2 85 0 254 212 0 12 chr6 62774540 62774625 -126504929 + CT-rich Low_complexity Low_complexity 1 84 0 225 0 0 0 chr6 62775099 62775124 -126504430 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 189 0 0 0 chr6 62777794 62777815 -126501739 + (CG)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr6 62781176 62781196 -126498358 + (TC)n Simple_repeat Simple_repeat 1 20 0 6450 113 24 20 chr6 62782879 62782983 -126496571 - Tigger1 DNA MER2_type -1165 1253 1151 2188 126 0 3 chr6 62782983 62783293 -126496261 - AluSc SINE Alu 0 309 1 6450 113 24 20 chr6 62783293 62784149 -126495405 - Tigger1 DNA MER2_type -1267 1151 289 30 0 0 0 chr6 62784267 62784297 -126495257 + AT_rich Low_complexity Low_complexity 1 30 0 25 40 0 20 chr6 62784831 62784849 -126494705 + AT_rich Low_complexity Low_complexity 1 18 -31 1850 220 128 51 chr6 62784849 62785363 -126494191 + MLT2B3 LTR ERVL 1 554 0 25 40 0 20 chr6 62785363 62785394 -126494160 + AT_rich Low_complexity Low_complexity 18 49 0 1765 70 0 0 chr6 62785394 62785608 -126493946 + AluY SINE Alu 13 226 -85 221 152 0 65 chr6 62785610 62785656 -126493898 - MIR SINE MIR -110 152 110 2214 221 17 25 chr6 62785699 62786225 -126493329 - L1ME1 LINE L1 -5 6161 5640 260 139 0 0 chr6 62786225 62786268 -126493286 - MADE1 DNA Mariner 0 80 38 1232 86 0 12 chr6 62786268 62786430 -126493124 + AluSg/x SINE Alu 147 306 -6 390 41 0 0 chr6 62786448 62786497 -126493057 - MADE1 DNA Mariner -30 50 2 1754 217 51 22 chr6 62786501 62787240 -126492314 - L1ME1 LINE L1 -521 5643 4885 217 333 125 10 chr6 62788369 62788465 -126491089 + MIR SINE MIR 39 145 -63 360 64 0 0 chr6 62789086 62789133 -126490421 + (CA)n Simple_repeat Simple_repeat 1 47 0 1534 108 36 0 chr6 62789240 62789462 -126490092 - MER30 DNA MER1_type 0 230 1 845 249 25 0 chr6 62789681 62789882 -126489672 - MER63A DNA MER1_type 0 210 5 3365 138 38 29 chr6 62790762 62791390 -126488164 - L1MB8 LINE L1 -6 6172 5539 877 152 0 0 chr6 62794355 62794487 -126485067 - FLAM_A SINE Alu -1 132 1 35 41 0 0 chr6 62794878 62794927 -126484627 + AT_rich Low_complexity Low_complexity 1 49 0 609 261 12 0 chr6 62795290 62795451 -126484103 - FRAM SINE Alu -13 163 1 1146 332 48 30 chr6 62796920 62797423 -126482131 + LTR67 LTR ERVL 36 547 -10 367 318 34 14 chr6 62797474 62797618 -126481936 + MIR SINE MIR 8 150 -58 22 0 0 0 chr6 62797734 62797756 -126481798 + AT_rich Low_complexity Low_complexity 1 22 0 232 361 9 37 chr6 62798004 62798112 -126481442 + L2 LINE L2 2983 3087 -185 203 312 54 108 chr6 62798331 62798424 -126481130 + L2 LINE L2 3149 3236 -36 1075 128 6 0 chr6 62798478 62798634 -126480920 - AluSg/x SINE Alu -6 304 148 21 0 0 0 chr6 62799118 62799139 -126480415 + AT_rich Low_complexity Low_complexity 1 21 0 2241 104 3 3 chr6 62799377 62799685 -126479869 - AluSp SINE Alu -5 308 1 7850 14 0 0 chr6 62799795 62800792 -126478762 + L1PA3 LINE L1 5171 6167 0 1392 221 10 17 chr6 62800901 62801195 -126478359 + AluJo SINE Alu 3 294 -18 33 25 0 0 chr6 62801200 62801240 -126478314 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr6 62801263 62801293 -126478261 + AT_rich Low_complexity Low_complexity 1 30 0 2012 162 11 0 chr6 62801298 62801663 -126477891 + L1MA5 LINE L1 5929 6297 -3 2430 80 0 6 chr6 62801806 62802117 -126477437 + AluSc SINE Alu 1 309 0 29 70 0 0 chr6 62802324 62802381 -126477173 + AT_rich Low_complexity Low_complexity 1 57 0 262 273 172 10 chr6 62803175 62803435 -126476119 + L2 LINE L2 2817 3176 -137 312 264 78 16 chr6 62803439 62803568 -126475986 + L1ME LINE L1 5706 5842 -322 279 200 0 0 chr6 62803569 62803624 -126475930 - MLT1E2 LTR MaLR 0 626 572 21 36 0 0 chr6 62803639 62803667 -126475887 + AT_rich Low_complexity Low_complexity 1 28 0 373 301 22 15 chr6 62803669 62803805 -126475749 + L2 LINE L2 3159 3295 -18 386 284 226 0 chr6 62807006 62807161 -126472393 + MIR SINE MIR 2 191 -71 410 167 8 11 chr6 62807267 62807393 -126472161 - AluJ/FRAM SINE Alu -16 296 135 216 388 25 0 chr6 62807393 62807473 -126472081 + MIR SINE MIR 50 131 -77 21 0 0 0 chr6 62808328 62808349 -126471205 + AT_rich Low_complexity Low_complexity 1 21 0 219 365 35 0 chr6 62808773 62808888 -126470666 - MIR SINE MIR -93 169 51 2875 251 83 42 chr6 62808918 62810011 -126469543 + L1ME1 LINE L1 56 1193 -5203 1715 168 57 52 chr6 62810025 62810206 -126469348 + L1MA9 LINE L1 4533 4712 -1434 1433 182 97 0 chr6 62810206 62810475 -126469079 + AluSq SINE Alu 2 296 -7 1715 168 57 52 chr6 62810475 62810716 -126468838 + L1MA9 LINE L1 4712 4957 -1189 42220 56 4 1 chr6 62810726 62816861 -126462693 + L1PA3 LINE L1 1 6154 -1 3408 190 55 28 chr6 62816889 62817182 -126462372 + L1MA9 LINE L1 5476 5760 -552 327 25 0 0 chr6 62817182 62817222 -126462332 + (TG)n Simple_repeat Simple_repeat 2 41 0 3408 190 55 28 chr6 62817222 62817706 -126461848 + L1MA9 LINE L1 5760 6274 -38 2058 282 48 25 chr6 62817860 62818450 -126461104 + L1ME1 LINE L1 1285 1914 -4482 1893 146 7 3 chr6 62818450 62818744 -126460810 + AluSx SINE Alu 9 303 -9 2058 282 48 25 chr6 62818744 62819245 -126460309 + L1ME1 LINE L1 1914 2402 -3994 1381 209 77 139 chr6 62820168 62821237 -126458317 + L1ME1 LINE L1 2346 3347 -2868 5567 234 61 32 chr6 62821251 62822550 -126457004 + L1ME1 LINE L1 3550 4811 -1424 369 0 0 0 chr6 62822550 62822591 -126456963 + (CA)n Simple_repeat Simple_repeat 2 42 0 5567 234 61 32 chr6 62822591 62823838 -126455716 + L1ME1 LINE L1 4811 6230 -5 230 284 30 15 chr6 62823910 62823977 -126455577 - L2 LINE L2 -4 3309 3242 25 0 0 0 chr6 62824167 62824192 -126455362 + AT_rich Low_complexity Low_complexity 1 25 0 420 289 10 69 chr6 62824602 62824806 -126454748 + MIR SINE MIR 71 262 0 609 257 22 123 chr6 62826301 62826577 -126452977 - MIR SINE MIR -2 260 13 2263 89 7 0 chr6 62826759 62827051 -126452503 + AluSx SINE Alu 14 307 -5 198 299 103 0 chr6 62827168 62827255 -126452299 - MIR SINE MIR -86 176 81 512 308 54 0 chr6 62828694 62828879 -126450675 - MLT1J2 LTR MaLR 0 450 256 649 276 31 0 chr6 62828881 62829073 -126450481 + MER105 DNA DNA 7 204 0 215 214 24 0 chr6 62829082 62829124 -126450430 + MER5B DNA MER1_type 4 46 -132 711 211 69 29 chr6 62829204 62829408 -126450146 - MLT1J2 LTR MaLR -238 212 1 1042 126 0 16 chr6 62830193 62830376 -126449178 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1890 145 13 10 chr6 62831049 62831359 -126448195 + AluSx SINE Alu 1 311 -1 230 114 0 45 chr6 62832578 62832622 -126446932 + LTR33A LTR ERVL 451 492 -31 291 266 43 11 chr6 62832636 62832730 -126446824 - MIR SINE MIR -66 196 100 991 194 84 24 chr6 62832731 62833764 -126445790 + L1MC2 LINE L1 5188 6336 -8 2428 228 19 21 chr6 62833797 62834469 -126445085 + L1M4 LINE L1 4016 4686 -1460 23 33 0 0 chr6 62835391 62835421 -126444133 + AT_rich Low_complexity Low_complexity 1 30 0 1816 140 33 27 chr6 62835422 62835722 -126443832 + AluSx SINE Alu 1 302 -10 582 183 0 0 chr6 62835722 62835837 -126443717 + GA-rich Low_complexity Low_complexity 1 115 0 1277 245 20 17 chr6 62835865 62836220 -126443334 + L1M4 LINE L1 4681 5036 -1110 423 161 0 136 chr6 62836220 62836338 -126443216 - MLT1A1 LTR MaLR 0 505 404 1451 274 59 69 chr6 62836342 62836612 -126442942 + L1MEc LINE L1 390 661 -5735 2160 131 0 3 chr6 62836612 62836925 -126442629 + AluSq SINE Alu 1 312 -1 1451 274 59 69 chr6 62836925 62837189 -126442365 + L1MEc LINE L1 661 926 -5470 200 246 18 0 chr6 62837189 62837246 -126442308 + (TA)n Simple_repeat Simple_repeat 2 59 0 1451 274 59 69 chr6 62837246 62837740 -126441814 + L1MEc LINE L1 926 1464 -4932 * 3612 15 0 0 chr6 62837735 62838338 -126441216 - L1PA2 LINE L1 -606 5549 4947 5308 8 0 0 chr6 62838338 62838958 -126440596 + L1PA2 LINE L1 5552 6171 0 814 244 77 47 chr6 62839011 62839568 -126439986 + L1M4 LINE L1 2894 3467 -2679 21 36 0 0 chr6 62840419 62840447 -126439107 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr6 62840653 62840681 -126438873 + AT_rich Low_complexity Low_complexity 1 28 0 1529 166 32 11 chr6 62844216 62844500 -126435054 - MLT1A1 LTR MaLR -46 319 30 2151 24 0 4 chr6 62844507 62844762 -126434792 + L1PA2 LINE L1 5901 6154 -1 33 0 0 0 chr6 62845011 62845044 -126434510 + AT_rich Low_complexity Low_complexity 1 33 0 314 250 227 8 chr6 62845624 62845752 -126433802 + MIR3 SINE MIR 39 194 -14 1874 77 0 0 chr6 62846049 62846283 -126433271 - AluY SINE Alu -17 294 61 931 255 39 4 chr6 62847517 62847748 -126431806 - MIR SINE MIR -5 257 19 271 250 73 0 chr6 62848166 62848234 -126431320 + tRNA-Glu-GAG tRNA tRNA 3 75 0 403 297 97 0 chr6 62848285 62848440 -126431114 + MIR SINE MIR 80 249 -13 226 245 0 0 chr6 62848542 62848595 -126430959 - L2 LINE L2 0 3313 3261 405 0 0 0 chr6 62849972 62850017 -126429537 + (CA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr6 62850431 62850452 -126429102 + AT_rich Low_complexity Low_complexity 1 21 0 269 192 0 0 chr6 62850646 62850698 -126428856 + L1M3 LINE L1 5593 5644 -524 2076 113 11 7 chr6 62850835 62851118 -126428436 + AluSx SINE Alu 15 298 -14 245 350 38 80 chr6 62851961 62852198 -126427356 + L2 LINE L2 2864 3090 -182 295 206 43 0 chr6 62852319 62852411 -126427143 + G-rich Low_complexity Low_complexity 2 97 0 657 228 101 0 chr6 62852800 62852958 -126426596 - MIR SINE MIR -21 241 68 385 202 50 67 chr6 62853508 62853627 -126425927 + MLT2C1 LTR ERVL 31 147 -250 387 0 0 0 chr6 62853798 62853841 -126425713 + (CA)n Simple_repeat Simple_repeat 1 43 0 318 382 69 44 chr6 62855102 62855421 -126424133 - L2 LINE L2 -5 3267 2941 372 320 0 16 chr6 62856306 62856428 -126423126 + MIR SINE MIR 1 120 -142 275 314 23 59 chr6 62856454 62856674 -126422880 + LTR16C LTR ERVL 280 491 0 26 74 0 0 chr6 62857762 62857816 -126421738 + AT_rich Low_complexity Low_complexity 1 54 0 559 279 75 38 chr6 62858227 62858467 -126421087 - MIR SINE MIR -6 256 8 477 231 19 83 chr6 62860238 62860394 -126419160 - MIR3 SINE MIR -23 185 40 646 186 0 0 chr6 62860587 62860705 -126418849 + FLAM_C SINE Alu 21 138 -5 255 125 0 0 chr6 62863844 62863884 -126415670 + (A)n Simple_repeat Simple_repeat 1 40 0 310 157 29 0 chr6 62865064 62865134 -126414420 + L1MA7 LINE L1 6218 6289 -2 1728 185 3 3 chr6 62865144 62865430 -126414124 + AluJo SINE Alu 2 287 -25 2116 225 91 31 chr6 62865483 62866283 -126413271 - L1MC4 LINE L1 -250 7792 6945 23 0 0 0 chr6 62866313 62866336 -126413218 + AT_rich Low_complexity Low_complexity 1 23 0 336 267 43 0 chr6 62866403 62866519 -126413035 + MER103 DNA DNA 3 123 -43 1294 246 26 42 chr6 62867004 62867431 -126412123 - MLT1C LTR MaLR -42 425 6 322 240 128 40 chr6 62867648 62867773 -126411781 - MIR SINE MIR -56 206 71 247 293 0 27 chr6 62868036 62868111 -126411443 + GA-rich Low_complexity Low_complexity 5 77 0 237 260 26 13 chr6 62869026 62869103 -126410451 + CT-rich Low_complexity Low_complexity 3 80 0 261 0 0 0 chr6 62869989 62870018 -126409536 + (TG)n Simple_repeat Simple_repeat 1 29 0 314 262 123 48 chr6 62871933 62872120 -126407434 + MIR SINE MIR 62 262 0 228 202 119 71 chr6 62872490 62872574 -126406980 + L2 LINE L2 3214 3301 -12 241 328 0 0 chr6 62872663 62872721 -126406833 + L2 LINE L2 3154 3211 -61 2055 127 0 3 chr6 62872792 62873083 -126406471 + AluSx SINE Alu 1 290 -22 421 135 22 0 chr6 62873083 62873172 -126406382 + GA-rich Low_complexity Low_complexity 1 91 0 396 243 61 81 chr6 62873364 62873462 -126406092 + MER5B DNA MER1_type 18 114 -64 2385 98 0 0 chr6 62873462 62873768 -126405786 - AluY SINE Alu -5 306 1 396 243 61 81 chr6 62873768 62873817 -126405737 + MER5B DNA MER1_type 114 162 -16 2236 123 9 4 chr6 62874601 62875021 -126404533 + L1PA16 LINE L1 5175 5600 -566 2375 127 12 12 chr6 62875506 62875922 -126403632 + L1PA16 LINE L1 5593 6008 -158 1466 189 29 33 chr6 62875923 62876198 -126403356 + AluSx SINE Alu 1 275 -37 243 0 0 0 chr6 62876198 62876225 -126403329 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 996 117 13 0 chr6 62876227 62876381 -126403173 + L1PA16 LINE L1 6002 6157 -9 1466 189 29 33 chr6 62876381 62876409 -126403145 + AluSx SINE Alu 276 306 -6 2156 128 31 25 chr6 62876734 62877094 -126402460 - THE1B LTR MaLR 0 364 3 676 177 0 57 chr6 62877298 62877439 -126402115 - FLAM_A SINE Alu 0 133 1 222 149 21 0 chr6 62878819 62878866 -126400688 + A-rich Low_complexity Low_complexity 2 49 0 204 0 83 0 chr6 62883863 62883899 -126395655 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 239 247 130 13 chr6 62884227 62884304 -126395250 - MIR3 SINE MIR -31 177 92 24 0 0 0 chr6 62888871 62888895 -126390659 + AT_rich Low_complexity Low_complexity 1 24 0 344 299 42 60 chr6 62890937 62891104 -126388450 - MER5A DNA MER1_type -2 187 24 258 56 0 0 chr6 62896379 62896415 -126383139 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 312 306 40 26 chr6 62896925 62897069 -126382485 + MIR SINE MIR 23 172 -71 270 0 0 0 chr6 62899156 62899186 -126380368 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 216 301 174 17 chr6 62900338 62900485 -126379069 + MIR SINE MIR 26 187 -21 900 166 50 30 chr6 62901055 62901254 -126378300 + L1MC3 LINE L1 6716 6918 -867 1445 131 9 0 chr6 62901254 62901476 -126378078 + AluSg/x SINE Alu 89 312 0 3471 180 64 33 chr6 62901482 62902327 -126377227 + L1MC3 LINE L1 6909 7779 -6 7519 80 8 24 chr6 62902448 62903585 -126375969 - L1PA7 LINE L1 -1077 5069 3951 6807 64 4 10 chr6 62903585 62904663 -126374891 + L1PA7 LINE L1 5077 6149 -5 399 41 0 0 chr6 62905046 62905095 -126374459 + (CA)n Simple_repeat Simple_repeat 2 50 0 342 273 66 25 chr6 62905576 62905697 -126373857 + L1ME4a LINE L1 5954 6079 -42 3876 144 14 11 chr6 62905716 62906369 -126373185 - L1PA15 LINE L1 -3 6162 5508 22 56 0 0 chr6 62906431 62906467 -126373087 + AT_rich Low_complexity Low_complexity 1 36 0 436 343 84 0 chr6 62907484 62907627 -126371927 + MIR3 SINE MIR 40 194 -14 248 259 34 61 chr6 62907994 62908141 -126371413 - MLT1H LTR MaLR -311 238 96 2245 128 10 0 chr6 62908236 62908540 -126371014 - AluSq SINE Alu -5 308 2 248 238 0 16 chr6 62908588 62908651 -126370903 - L2 LINE L2 -2 3311 3250 * 522 237 52 23 chr6 62908645 62908818 -126370736 - L2 LINE L2 -792 2522 2345 1069 251 142 43 chr6 62908960 62909497 -126370057 - MLT1E3 LTR MaLR -34 590 1 2169 117 3 7 chr6 62909957 62910256 -126369298 - AluSx SINE Alu -14 298 1 265 312 56 0 chr6 62910272 62910397 -126369157 + MER103 DNA DNA 1 132 -34 265 315 76 11 chr6 62911890 62911982 -126367572 - L2 LINE L2 0 3272 3175 224 325 32 32 chr6 62912716 62912839 -126366715 - L2 LINE L2 -683 2631 2509 428 204 133 0 chr6 62913546 62913659 -126365895 - MIR SINE MIR -1 261 134 421 289 64 11 chr6 62914353 62914608 -126364946 + L1MC4a LINE L1 5526 5803 -436 1387 185 32 56 chr6 62914609 62914949 -126364605 + MER44D DNA MER2_type 1 602 -7 269 194 39 97 chr6 62915028 62915131 -126364423 + L1MC4a LINE L1 5855 5951 -1857 1006 303 53 18 chr6 62915281 62915680 -126363874 - LTR16B LTR ERVL 0 464 52 1654 78 74 0 chr6 62916076 62916307 -126363247 + L1PA8 LINE L1 5925 6172 0 220 286 0 32 chr6 62916307 62916370 -126363184 - MIR SINE MIR -161 101 41 588 249 66 35 chr6 62916933 62917130 -126362424 - MIR SINE MIR -11 251 49 1048 244 98 4 chr6 62917206 62917481 -126362073 + MER58B DNA MER1_type 5 305 -36 332 326 116 29 chr6 62917548 62917686 -126361868 + MER5A DNA MER1_type 27 187 -2 196 353 16 8 chr6 62919093 62919215 -126360339 + L2 LINE L2 2942 3064 -208 392 293 64 0 chr6 62919559 62919694 -126359860 - MIR3 SINE MIR -7 201 58 281 252 70 35 chr6 62920858 62920973 -126358581 + MIR3 SINE MIR 73 191 -17 423 324 33 44 chr6 62921191 62921437 -126358117 + MIR SINE MIR 11 252 -10 1534 116 27 4 chr6 62922715 62922940 -126356614 + MER30 DNA MER1_type 1 230 0 1445 172 58 24 chr6 62923060 62923381 -126356173 - AluJo SINE Alu 0 312 1 288 258 12 6 chr6 62923582 62923745 -126355809 + (TA)n Simple_repeat Simple_repeat 2 165 0 4176 152 32 24 chr6 62924063 62924297 -126355257 - L1MA4 LINE L1 -2 6298 6067 2114 120 0 23 chr6 62924297 62924597 -126354957 - AluSq SINE Alu -10 303 11 4176 152 32 24 chr6 62924597 62925292 -126354262 - L1MA4 LINE L1 -233 6067 5290 267 308 45 15 chr6 62925621 62925754 -126353800 + HAL1 LINE L1 1617 1753 -754 403 301 38 0 chr6 62927244 62927377 -126352177 + MIR SINE MIR 45 182 -80 2064 95 60 0 chr6 62927688 62927972 -126351582 - AluSq SINE Alu -12 301 1 21 36 0 0 chr6 62928281 62928309 -126351245 + AT_rich Low_complexity Low_complexity 1 28 0 321 176 65 43 chr6 62928978 62929073 -126350481 - MER91B DNA MER1_type -92 98 1 361 205 90 0 chr6 62928989 62929067 -126350487 + MER91C DNA MER1_type 56 140 0 255 290 16 32 chr6 62929775 62929899 -126349655 + LTR67 LTR ERVL 428 549 -8 732 299 41 63 chr6 62929928 62930486 -126349068 + L1ME LINE L1 4453 4998 -1148 21 0 0 0 chr6 62930665 62930686 -126348868 + AT_rich Low_complexity Low_complexity 1 21 0 317 326 0 0 chr6 62930781 62930879 -126348675 + L1ME LINE L1 5721 5818 -303 2138 130 0 3 chr6 62931558 62931850 -126347704 - AluSx SINE Alu -21 291 1 805 265 49 35 chr6 62932085 62932264 -126347290 + L2 LINE L2 3009 3184 -129 306 50 0 0 chr6 62932264 62932304 -126347250 + (TC)n Simple_repeat Simple_repeat 1 40 0 231 36 0 0 chr6 62932303 62932331 -126347223 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 805 265 49 35 chr6 62932304 62932438 -126347116 + L2 LINE L2 3184 3299 -14 325 312 166 6 chr6 62934998 62935155 -126344399 + MIR SINE MIR 81 262 0 1910 206 71 29 chr6 62935175 62935651 -126343903 + MLT1D LTR MaLR 1 496 -9 252 0 0 0 chr6 62936022 62936050 -126343504 + (A)n Simple_repeat Simple_repeat 1 28 0 389 239 46 9 chr6 62936187 62936296 -126343258 + MLT1J LTR MaLR 83 195 -316 231 207 24 110 chr6 62936448 62936530 -126343024 + MLT1J LTR MaLR 376 450 -61 366 350 29 21 chr6 62936872 62937012 -126342542 + MIR3 SINE MIR 5 145 -63 348 305 35 20 chr6 62937117 62937320 -126342234 + Charlie8 DNA MER1_type 1 206 -2211 183 80 0 0 chr6 62937330 62937355 -126342199 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 213 325 44 18 chr6 62937355 62937469 -126342085 - L2 LINE L2 -13 3300 3184 250 367 13 0 chr6 62937740 62937819 -126341735 - L2 LINE L2 0 3272 3193 342 255 0 41 chr6 62938004 62938102 -126341452 - MIR SINE MIR -46 216 123 329 290 76 38 chr6 62938408 62938539 -126341015 - MIR SINE MIR -107 155 20 286 267 99 20 chr6 62939955 62940056 -126339498 + MIR SINE MIR 3 111 -151 1269 93 10 31 chr6 62940124 62940318 -126339236 + L1PB1 LINE L1 5962 6151 0 2118 270 93 16 chr6 62940587 62941666 -126337888 - L2 LINE L2 -2 3311 2155 600 53 0 0 chr6 62942232 62942308 -126337246 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 619 195 59 0 chr6 62942317 62942435 -126337119 - FLAM_A SINE Alu -8 125 1 2177 116 0 13 chr6 62944360 62944670 -126334884 + AluSg SINE Alu 1 306 -4 21 0 0 0 chr6 62944670 62944691 -126334863 + AT_rich Low_complexity Low_complexity 1 21 0 2425 85 3 0 chr6 62944912 62945218 -126334336 + AluSp SINE Alu 4 310 -3 2189 275 83 39 chr6 62947071 62947954 -126331600 + L2 LINE L2 1431 2352 -962 3645 182 52 16 chr6 62947958 62948956 -126330598 + L1MC2 LINE L1 5032 6064 -280 2363 94 3 0 chr6 62949181 62949479 -126330075 + AluSx SINE Alu 2 300 -12 307 236 38 51 chr6 62949480 62949637 -126329917 - MER41B LTR ERV1 -208 427 273 1462 188 11 0 chr6 62949826 62950103 -126329451 + L1MC1 LINE L1 6054 6333 0 1206 302 74 17 chr6 62950186 62950936 -126328618 + L2 LINE L2 2505 3305 -8 21 0 0 0 chr6 62951558 62951579 -126327975 + AT_rich Low_complexity Low_complexity 1 21 0 380 250 54 68 chr6 62953524 62953672 -126325882 + MER5A DNA MER1_type 38 183 -6 22 0 0 0 chr6 62954296 62954318 -126325236 + AT_rich Low_complexity Low_complexity 1 22 0 222 271 34 0 chr6 62954479 62954538 -126325016 + L2 LINE L2 3251 3311 -2 916 261 55 8 chr6 62955168 62955406 -126324148 + MIR SINE MIR 2 250 -12 294 205 0 0 chr6 62955408 62955491 -126324063 + (TA)n Simple_repeat Simple_repeat 2 84 0 363 259 52 91 chr6 62955711 62955943 -126323611 - MIR SINE MIR -31 231 9 1865 171 0 3 chr6 62957049 62957353 -126322201 + AluJo SINE Alu 3 305 -7 2185 101 3 3 chr6 62957353 62957639 -126321915 + AluSq SINE Alu 1 287 -26 232 278 0 14 chr6 62957717 62957789 -126321765 + HAL1b LINE L1 1196 1266 -82 890 174 28 42 chr6 62958088 62958300 -126321254 - MER3 DNA MER1_type 0 209 1 600 165 31 0 chr6 62958895 62958992 -126320562 + MER5A DNA MER1_type 11 110 -79 818 181 72 0 chr6 62960034 62960200 -126319354 + MER20 DNA MER1_type 40 217 -2 209 339 0 0 chr6 62960307 62960369 -126319185 - L2 LINE L2 -6 3307 3246 2037 194 34 93 chr6 62961266 62961536 -126318018 + L1MC4a LINE L1 7147 7431 -377 2018 135 0 10 chr6 62961536 62961839 -126317715 + AluSx SINE Alu 5 304 -8 2037 194 34 93 chr6 62961839 62962245 -126317309 + L1MC4a LINE L1 7431 7783 -25 7326 126 17 8 chr6 62962249 62963452 -126316102 - Tigger1 DNA MER2_type -1 2417 1204 364 169 0 0 chr6 62963586 62963651 -126315903 + MSTB1 LTR MaLR 368 432 0 240 394 43 11 chr6 62963651 62963839 -126315715 - MIR SINE MIR -49 213 20 411 332 95 20 chr6 62964934 62965280 -126314274 - L1ME4a LINE L1 -265 5856 5485 25 0 0 0 chr6 62966025 62966050 -126313504 + AT_rich Low_complexity Low_complexity 1 25 0 742 290 61 17 chr6 62966427 62966658 -126312896 - MIR SINE MIR -2 260 20 40454 51 7 1 chr6 62966759 62972870 -126306684 - L1PA4 LINE L1 0 6155 6 459 329 42 6 chr6 62973106 62973273 -126306281 + MIR SINE MIR 20 192 -70 283 214 79 111 chr6 62973280 62973406 -126306148 + L2 LINE L2 3192 3313 0 2135 134 0 3 chr6 62973448 62973755 -126305799 + AluSg SINE Alu 1 306 -4 207 0 0 0 chr6 62974192 62974215 -126305339 + (TG)n Simple_repeat Simple_repeat 2 24 0 259 262 66 0 chr6 62974480 62974541 -126305013 - MER2 DNA MER2_type 0 345 281 * 740 262 6 0 chr6 62974527 62974691 -126304863 - MER8 DNA MER2_type -72 167 3 25 31 0 0 chr6 62974839 62974871 -126304683 + AT_rich Low_complexity Low_complexity 1 32 0 1754 182 3 7 chr6 62974871 62975162 -126304392 - AluJo SINE Alu -12 300 11 1924 62 8 0 chr6 62975163 62975405 -126304149 - L1PA6 LINE L1 -4 6150 5907 345 269 11 11 chr6 62975425 62975518 -126304036 - MIR SINE MIR -13 249 157 332 225 25 0 chr6 62975670 62975750 -126303804 - MLT1E-int LTR MaLR -1289 82 1 1138 250 76 94 chr6 62975750 62975967 -126303587 - MLT1E LTR MaLR 0 593 374 1750 120 0 4 chr6 62975967 62976208 -126303346 - AluSx SINE Alu -13 299 60 1138 250 76 94 chr6 62976208 62976593 -126302961 - MLT1E LTR MaLR -219 374 2 243 233 311 29 chr6 62976594 62976697 -126302857 - MIR SINE MIR -130 132 1 539 146 6 134 chr6 62978211 62978382 -126301172 + LTR33 LTR ERVL 1 149 -372 498 244 0 0 chr6 62978379 62978498 -126301056 + LTR33 LTR ERVL 397 515 -6 * 216 222 22 0 chr6 62979338 62979383 -126300171 + MIR3 SINE MIR 115 160 -48 995 111 6 0 chr6 62981238 62981400 -126298154 + L1MB3 LINE L1 6006 6168 -15 1526 150 24 103 chr6 62982168 62982507 -126297047 - AluJb SINE Alu 0 312 1 2065 129 3 7 chr6 62983214 62983516 -126296038 + AluSx SINE Alu 1 301 -11 212 250 153 48 chr6 62984007 62984131 -126295423 - MIR SINE MIR -3 259 123 316 333 0 20 chr6 62984654 62984753 -126294801 + MIR3 SINE MIR 106 202 -6 3331 88 5 5 chr6 62987149 62987593 -126291961 + MLT2A1 LTR ERVL 1 444 0 26125 73 19 2 chr6 62987593 62992991 -126286563 + HERVL-A1 LTR ERVL 1 5490 -164 22 35 0 0 chr6 62993134 62993163 -126286391 + AT_rich Low_complexity Low_complexity 1 29 0 40345 55 3 1 chr6 62993229 62999371 -126280183 - L1PA3 LINE L1 -3 6152 1 593 240 100 18 chr6 62999381 62999610 -126279944 - L1 LINE L1 -1189 4957 4710 402 226 43 0 chr6 62999694 62999787 -126279767 - AluJo SINE Alu -100 212 116 16595 44 5 0 chr6 62999894 63002093 -126277461 + L1P LINE L1 1006 3214 -2932 898 164 66 14 chr6 63002262 63002475 -126277079 - L1MC3 LINE L1 -651 7134 6911 1417 135 9 0 chr6 63002475 63002697 -126276857 - AluSg/x SINE Alu 0 312 89 2800 203 70 49 chr6 63002697 63003558 -126275996 - L1MC3 LINE L1 -867 6918 6040 989 165 45 14 chr6 63003736 63003981 -126275573 - L1MC3 LINE L1 -280 6079 5816 1075 310 110 56 chr6 63003984 63004946 -126274608 - L1M4 LINE L1 -1087 5059 4046 180 0 0 0 chr6 63005694 63005714 -126273840 + (TG)n Simple_repeat Simple_repeat 1 20 0 428 67 0 44 chr6 63005714 63005804 -126273750 + (TA)n Simple_repeat Simple_repeat 2 87 0 529 236 27 47 chr6 63008371 63008519 -126271035 - MIR SINE MIR -10 252 108 2660 39 0 3 chr6 63008588 63008898 -126270656 - AluY SINE Alu -2 309 1 208 306 0 0 chr6 63008917 63008979 -126270575 + A-rich Low_complexity Low_complexity 3 64 0 958 240 79 44 chr6 63009598 63009965 -126269589 - L1MC3 LINE L1 -1879 5929 5550 1807 126 0 0 chr6 63010190 63010460 -126269094 + AluSg SINE Alu 38 307 0 327 49 0 0 chr6 63011635 63011676 -126267878 + (CA)n Simple_repeat Simple_repeat 2 42 0 1190 137 78 5 chr6 63012217 63012421 -126267133 - MER20 DNA MER1_type 0 219 1 2030 156 11 35 chr6 63012804 63013176 -126266378 - MLT1A1 LTR MaLR 0 365 3 204 295 62 54 chr6 63013381 63013493 -126266061 + L2 LINE L2 3165 3277 -36 478 294 50 0 chr6 63013505 63013624 -126265930 + L2 LINE L2 3148 3272 0 615 308 39 24 chr6 63013989 63014197 -126265357 + MIR SINE MIR 7 217 -45 2162 98 3 41 chr6 63014303 63014618 -126264936 - AluSx SINE Alu -9 303 1 288 0 0 0 chr6 63018177 63018209 -126261345 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 471 63 0 0 chr6 63018208 63018271 -126261283 + (TG)n Simple_repeat Simple_repeat 2 64 0 1964 156 17 97 chr6 63018328 63018538 -126261016 + MSTB LTR MaLR 1 155 -271 995 171 37 14 chr6 63018538 63018755 -126260799 - L1PA13 LINE L1 -8 6155 5934 1964 156 17 97 chr6 63018755 63019007 -126260547 + MSTB LTR MaLR 155 426 0 240 394 43 11 chr6 63019007 63019195 -126260359 - MIR SINE MIR -49 213 20 411 332 95 20 chr6 63020291 63020637 -126258917 - L1ME4a LINE L1 -265 5856 5485 25 0 0 0 chr6 63021382 63021407 -126258147 + AT_rich Low_complexity Low_complexity 1 25 0 742 290 61 17 chr6 63021784 63022015 -126257539 - MIR SINE MIR -2 260 20 40488 50 7 1 chr6 63022116 63028227 -126251327 - L1PA4 LINE L1 0 6155 6 459 329 42 6 chr6 63028463 63028630 -126250924 + MIR SINE MIR 20 192 -70 283 214 79 111 chr6 63028637 63028763 -126250791 + L2 LINE L2 3192 3313 0 2135 134 0 3 chr6 63028805 63029112 -126250442 + AluSg SINE Alu 1 306 -4 207 0 0 0 chr6 63029549 63029572 -126249982 + (TG)n Simple_repeat Simple_repeat 2 24 0 259 262 66 0 chr6 63029837 63029898 -126249656 - MER2 DNA MER2_type 0 345 281 * 740 262 6 0 chr6 63029884 63030048 -126249506 - MER8 DNA MER2_type -72 167 3 25 31 0 0 chr6 63030196 63030228 -126249326 + AT_rich Low_complexity Low_complexity 1 32 0 1754 182 3 7 chr6 63030228 63030519 -126249035 - AluJo SINE Alu -12 300 11 1924 62 8 0 chr6 63030520 63030762 -126248792 - L1PA6 LINE L1 -4 6150 5907 345 269 11 11 chr6 63030782 63030875 -126248679 - MIR SINE MIR -13 249 157 332 225 25 0 chr6 63031027 63031107 -126248447 - MLT1E-int LTR MaLR -1289 82 1 1138 250 76 94 chr6 63031107 63031324 -126248230 - MLT1E LTR MaLR 0 593 374 1750 120 0 4 chr6 63031324 63031565 -126247989 - AluSx SINE Alu -13 299 60 1138 250 76 94 chr6 63031565 63031950 -126247604 - MLT1E LTR MaLR -219 374 2 243 233 311 29 chr6 63031951 63032054 -126247500 - MIR SINE MIR -130 132 1 539 146 6 134 chr6 63033568 63033739 -126245815 + LTR33 LTR ERVL 1 149 -372 498 244 0 0 chr6 63033736 63033855 -126245699 + LTR33 LTR ERVL 397 515 -6 * 216 222 22 0 chr6 63034695 63034740 -126244814 + MIR3 SINE MIR 115 160 -48 995 111 6 0 chr6 63036595 63036757 -126242797 + L1MB3 LINE L1 6006 6168 -15 1526 150 24 103 chr6 63037525 63037864 -126241690 - AluJb SINE Alu 0 312 1 2065 129 3 7 chr6 63038571 63038873 -126240681 + AluSx SINE Alu 1 301 -11 210 250 153 48 chr6 63039364 63039488 -126240066 - MIR SINE MIR -3 259 123 316 333 0 20 chr6 63040011 63040110 -126239444 + MIR3 SINE MIR 106 202 -6 3312 90 5 5 chr6 63042506 63042950 -126236604 + MLT2A1 LTR ERVL 1 444 0 41917 72 19 2 chr6 63042950 63048348 -126231206 + HERVL-A1 LTR ERVL 1 5490 -164 22 35 0 0 chr6 63048491 63048520 -126231034 + AT_rich Low_complexity Low_complexity 1 29 0 2166 61 0 0 chr6 63048586 63048864 -126230690 - L1PA3 LINE L1 -3 6152 5875 1049 75 12 12 chr6 63048864 63049024 -126230530 + HERVL-A1 LTR ERVL 5495 5654 0 2892 85 35 5 chr6 63049024 63049430 -126230124 + MLT2A1 LTR ERVL 1 486 -34 25 31 0 0 chr6 63049430 63049462 -126230092 + AT_rich Low_complexity Low_complexity 1 32 0 373 119 0 12 chr6 63049462 63049532 -126230022 + MLT2A2 LTR ERVL 399 453 0 337 405 139 7 chr6 63049770 63050064 -126229490 + L2 LINE L2 2932 3264 -8 468 259 18 0 chr6 63050394 63050506 -126229048 - MER81 DNA DNA 0 114 1 192 342 13 0 chr6 63050739 63050815 -126228739 - L2 LINE L2 -8 3305 3229 1058 216 115 96 chr6 63050859 63051388 -126228166 + MLT1F LTR MaLR 2 540 -2 186 232 107 54 chr6 63051443 63051499 -126228055 + L2 LINE L2 3214 3272 0 408 335 22 49 chr6 63051999 63052184 -126227370 + MIR3 SINE MIR 2 181 -27 300 163 0 0 chr6 63052560 63052609 -126226945 + L2 LINE L2 3265 3313 0 202 354 106 6 chr6 63052773 63052934 -126226620 + MIR SINE MIR 83 259 -3 701 149 4 208 chr6 63054790 63055059 -126224495 - MER20 DNA MER1_type -4 215 2 342 235 70 99 chr6 63056295 63056508 -126223046 + L1MC4 LINE L1 7824 8030 -12 304 293 12 0 chr6 63058131 63058213 -126221341 - MIR SINE MIR -112 150 68 231 321 73 46 chr6 63058525 63058634 -126220920 - MIR3 SINE MIR -48 160 49 2803 130 12 2 chr6 63059167 63059590 -126219964 - MSTA LTR MaLR -1 427 1 2127 110 31 0 chr6 63060529 63060819 -126218735 - AluSq SINE Alu -14 299 1 280 364 156 35 chr6 63061859 63062897 -126216657 + L2 LINE L2 1238 2401 -913 2468 65 0 19 chr6 63062928 63063235 -126216319 + AluY SINE Alu 1 301 -10 303 28 0 0 chr6 63063235 63063271 -126216283 + (TA)n Simple_repeat Simple_repeat 2 37 0 13895 182 36 13 chr6 63063272 63069194 -126210360 - L1PB2 LINE L1 -8 6859 626 1134 147 5 0 chr6 63069191 63069382 -126210172 - L1PB2 LINE L1 -6665 198 7 * 855 176 72 10 chr6 63069555 63069748 -126209806 - L1MA9 LINE L1 -2 6310 6106 185 374 12 24 chr6 63069760 63069843 -126209711 + L2 LINE L2 2555 2636 -678 260 352 11 0 chr6 63069859 63069947 -126209607 - L2 LINE L2 -665 2649 2561 208 313 46 30 chr6 63069947 63070078 -126209476 - L2 LINE L2 -1945 1369 1237 378 209 23 0 chr6 63070161 63070247 -126209307 + MLT1D-int LTR MaLR 1269 1356 -15 2092 199 49 20 chr6 63070265 63070752 -126208802 + MLT1D LTR MaLR 5 505 0 1409 191 0 0 chr6 63071027 63071263 -126208291 + AluJb SINE Alu 1 236 -76 1044 205 20 5 chr6 63072428 63072623 -126206931 + MER58A DNA MER1_type 12 209 -15 10945 98 9 1 chr6 63073200 63074796 -126204758 - L1P LINE L1 -2299 3847 2239 242 239 174 46 chr6 63076095 63076204 -126203350 + MIR SINE MIR 112 234 -28 729 245 99 10 chr6 63077346 63077538 -126202016 - MER58A DNA MER1_type -15 209 1 609 329 58 12 chr6 63077556 63077799 -126201755 - MIR SINE MIR -6 256 3 436 195 0 0 chr6 63078905 63078987 -126200567 - MLT1A1 LTR MaLR 0 365 284 695 273 31 21 chr6 63078991 63079051 -126200503 - L1MEd LINE L1 -3167 2962 2904 2411 77 0 0 chr6 63079051 63079349 -126200205 + AluY SINE Alu 1 298 -13 695 273 31 21 chr6 63079349 63079574 -126199980 - L1MEd LINE L1 -3225 2904 2674 1663 137 4 0 chr6 63079604 63079852 -126199702 - L1PA15 LINE L1 -21 6144 5896 386 241 52 0 chr6 63080503 63080619 -126198935 - L1MEd LINE L1 -4597 1532 1411 308 250 77 39 chr6 63080694 63080798 -126198756 - L1MC4a LINE L1 -1535 6273 6166 554 48 0 71 chr6 63080798 63080882 -126198672 - L1PA3 LINE L1 -5 6150 6073 679 220 106 51 chr6 63080951 63081362 -126198192 - L1MEd LINE L1 -4797 1332 903 271 255 21 53 chr6 63081671 63081765 -126197789 - L1MEd LINE L1 -5494 625 535 3653 102 50 9 chr6 63082131 63082690 -126196864 - L1PA11 LINE L1 -8 6166 5585 457 66 14 80 chr6 63082744 63082961 -126196593 + (TA)n Simple_repeat Simple_repeat 1 202 0 23 0 0 0 chr6 63083055 63083078 -126196476 + AT_rich Low_complexity Low_complexity 1 23 0 425 254 53 0 chr6 63083741 63083855 -126195699 + MIR SINE MIR 90 209 -53 1376 162 60 60 chr6 63083855 63084157 -126195397 + AluJb SINE Alu 1 302 -10 288 0 0 0 chr6 63085230 63085262 -126194292 + (TG)n Simple_repeat Simple_repeat 1 32 0 4938 203 26 6 chr6 63085286 63085437 -126194117 - L1MA10 LINE L1 -14 6320 6174 306 50 0 0 chr6 63085437 63085477 -126194077 + (TTA)n Simple_repeat Simple_repeat 3 42 0 4938 203 26 6 chr6 63085477 63086360 -126193194 - L1MA10 LINE L1 -160 6174 5265 307 273 65 39 chr6 63087086 63087240 -126192314 + L2 LINE L2 3111 3268 -4 402 328 65 40 chr6 63087640 63087859 -126191695 + MIR SINE MIR 7 230 -32 235 340 0 0 chr6 63087897 63087950 -126191604 + L2 LINE L2 3201 3253 -19 1139 192 86 32 chr6 63088440 63088753 -126190801 - L1MA9 LINE L1 -38 6274 5945 733 231 41 68 chr6 63089035 63089256 -126190298 - MER20 DNA MER1_type -4 215 1 287 290 155 0 chr6 63089729 63089872 -126189682 + MIR3 SINE MIR 36 208 0 709 285 53 29 chr6 63091130 63091520 -126188034 - LTR16A LTR ERVL 0 450 16 16565 32 3 0 chr6 63091918 63094071 -126185483 - L1PA3 LINE L1 -993 5153 2997 7959 34 0 7 chr6 63094071 63095050 -126184504 + L1PA3 LINE L1 5183 6155 0 2163 115 3 6 chr6 63095568 63095880 -126183674 - AluSq SINE Alu -2 311 1 512 274 116 25 chr6 63096044 63096390 -126183164 - MLT1J2 LTR MaLR -27 423 1 291 298 76 32 chr6 63096527 63096685 -126182869 - L2 LINE L2 -1218 2096 1932 1338 260 89 0 chr6 63096775 63097167 -126182387 + L1ME3A LINE L1 5652 6078 -92 1875 234 88 0 chr6 63097178 63097632 -126181922 + MLT1D LTR MaLR 12 505 0 321 363 42 8 chr6 63097684 63097921 -126181633 - L2 LINE L2 -1356 1958 1714 1266 266 93 61 chr6 63098204 63098328 -126181226 - MLT1H LTR MaLR 0 549 430 1260 196 72 34 chr6 63098328 63098619 -126180935 - AluJb SINE Alu -10 302 1 1266 266 93 61 chr6 63098619 63099021 -126180533 - MLT1H LTR MaLR -119 430 6 2263 96 10 10 chr6 63100344 63100646 -126178908 - AluY SINE Alu -9 302 1 21 0 0 0 chr6 63100649 63100670 -126178884 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 63100812 63100835 -126178719 + AT_rich Low_complexity Low_complexity 1 23 0 204 261 0 0 chr6 63100835 63100881 -126178673 + L2 LINE L2 3264 3309 -4 188 339 0 0 chr6 63101537 63101599 -126177955 - L2 LINE L2 -1 3271 3210 365 245 102 0 chr6 63101630 63101728 -126177826 - MIR SINE MIR -138 124 17 371 314 57 19 chr6 63101752 63101911 -126177643 + MIR SINE MIR 83 247 -15 521 240 26 26 chr6 63101923 63102077 -126177477 - MIR3 SINE MIR -39 169 16 249 218 57 5 chr6 63102542 63102609 -126176945 - MIR SINE MIR -65 143 77 787 184 6 18 chr6 63102725 63102888 -126176666 + MER96B DNA MER1_type? 16 176 -241 198 0 0 0 chr6 63104036 63104058 -126175496 + (A)n Simple_repeat Simple_repeat 1 22 0 684 240 22 33 chr6 63104790 63104973 -126174581 - LTR8A LTR ERV1 -62 665 485 209 373 127 16 chr6 63106546 63106672 -126172882 - L2 LINE L2 0 3272 3133 220 307 79 0 chr6 63107160 63107261 -126172293 - MIR SINE MIR -31 231 123 311 303 33 49 chr6 63108726 63108848 -126170706 - MIR SINE MIR -115 147 28 475 292 27 89 chr6 63110147 63110404 -126169150 + MIR SINE MIR 13 253 -9 252 278 13 48 chr6 63111533 63111633 -126167921 - MER5A DNA MER1_type -1 188 87 195 100 0 0 chr6 63111633 63111663 -126167891 + (TG)n Simple_repeat Simple_repeat 2 31 0 252 278 13 48 chr6 63111663 63111679 -126167875 - MER5A DNA MER1_type -102 87 72 542 255 45 38 chr6 63111683 63111840 -126167714 - MER63A DNA MER1_type 0 210 53 1041 124 0 37 chr6 63111862 63112023 -126167531 + AluSg/x SINE Alu 137 291 -21 7928 56 1 9 chr6 63112157 63113162 -126166392 + L1P LINE L1 2 998 -5148 247 250 28 14 chr6 63213255 63213327 -126066227 - MIR SINE MIR -157 105 33 215 298 0 0 chr6 63213887 63213934 -126065620 + polypurine Low_complexity Low_complexity 2 48 0 305 316 101 6 chr6 63214128 63214286 -126065268 + MIR SINE MIR 84 256 -6 1660 95 14 0 chr6 63215604 63215850 -126063704 - AluY SINE Alu 0 305 57 283 343 47 23 chr6 63216748 63216920 -126062634 + MER5A DNA MER1_type 2 188 -1 2416 200 59 7 chr6 63216939 63217484 -126062070 - MER34C LTR ERV1 -2 583 11 787 288 214 7 chr6 63218098 63218504 -126061050 - L2 LINE L2 -1 3312 2823 584 257 60 78 chr6 63218534 63218752 -126060802 - MIR SINE MIR 0 262 49 788 168 9 163 chr6 63219688 63219980 -126059574 + MIR SINE MIR 16 262 0 911 264 76 45 chr6 63220545 63220927 -126058627 + MLT1H1 LTR MaLR 1 394 -161 453 289 28 0 chr6 63220979 63221121 -126058433 + MLT1H1 LTR MaLR 364 509 -46 1110 193 59 116 chr6 63221146 63221551 -126058003 + MSTD LTR MaLR 15 396 0 204 186 93 0 chr6 63221724 63221767 -126057787 + MER5B DNA MER1_type 1 47 -131 250 247 26 52 chr6 63223052 63223129 -126056425 - L2 LINE L2 -60 3253 3179 25 0 0 0 chr6 63223145 63223170 -126056384 + AT_rich Low_complexity Low_complexity 1 25 0 1240 252 136 18 chr6 63224329 63224778 -126054776 - MLT1D LTR MaLR -3 502 1 191 408 69 0 chr6 63224806 63224936 -126054618 + L2 LINE L2 3127 3265 -7 183 286 48 0 chr6 63225446 63225488 -126054066 - MIR SINE MIR -164 98 55 2095 119 30 0 chr6 63225678 63225980 -126053574 - AluSp SINE Alu -2 311 1 351 0 0 0 chr6 63226232 63226271 -126053283 + (TG)n Simple_repeat Simple_repeat 2 40 0 460 313 0 17 chr6 63227227 63227342 -126052212 + L2 LINE L2 3141 3253 -19 252 292 123 35 chr6 63227386 63227557 -126051997 - L2 LINE L2 -5 3308 3123 1446 226 33 28 chr6 63227790 63228153 -126051401 - MLT1A1 LTR MaLR 0 365 1 229 363 62 62 chr6 63228168 63228328 -126051226 + MIR SINE MIR 34 193 -69 188 277 0 0 chr6 63228595 63228642 -126050912 + MIR SINE MIR 93 139 -69 245 146 0 42 chr6 63230769 63230817 -126048737 + Alu SINE Alu 249 294 -7 22 0 0 0 chr6 63231168 63231190 -126048364 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr6 63231894 63231926 -126047628 + AT_rich Low_complexity Low_complexity 1 32 0 270 0 0 0 chr6 63231944 63231974 -126047580 + (CA)n Simple_repeat Simple_repeat 2 31 0 270 0 0 0 chr6 63232264 63232294 -126047260 + (TA)n Simple_repeat Simple_repeat 2 31 0 601 317 94 34 chr6 63232294 63232742 -126046812 - MLT1J LTR MaLR -7 504 30 381 252 167 40 chr6 63232784 63233006 -126046548 - LTR16A1 LTR ERVL 0 457 208 203 100 0 50 chr6 63233419 63233459 -126046095 + (TCC)n Simple_repeat Simple_repeat 2 39 0 25 0 0 0 chr6 63233875 63233900 -126045654 + AT_rich Low_complexity Low_complexity 1 25 0 913 224 21 5 chr6 63234613 63234805 -126044749 + MIR SINE MIR 2 196 -66 21 57 0 0 chr6 63234873 63234908 -126044646 + AT_rich Low_complexity Low_complexity 1 35 0 198 265 0 0 chr6 63234975 63235024 -126044530 + L2 LINE L2 3265 3313 0 305 304 100 32 chr6 63235293 63235513 -126044041 - Charlie8 DNA MER1_type -2171 246 1 267 323 113 10 chr6 63235578 63235773 -126043781 + L2 LINE L2 2590 2804 -510 335 208 113 19 chr6 63235908 63236014 -126043540 + MLT1C LTR MaLR 6 121 -346 327 318 113 10 chr6 63236318 63236513 -126043041 + L2 LINE L2 2590 2804 -510 1919 231 36 11 chr6 63236648 63237098 -126042456 + MLT1C LTR MaLR 6 466 -1 505 311 33 7 chr6 63237431 63237582 -126041972 + MIR3 SINE MIR 54 208 0 21 0 0 0 chr6 63237660 63237681 -126041873 + AT_rich Low_complexity Low_complexity 1 21 0 263 222 37 25 chr6 63237735 63237816 -126041738 + L2 LINE L2 3232 3313 0 21 0 0 0 chr6 63238662 63238683 -126040871 + AT_rich Low_complexity Low_complexity 1 21 0 501 345 50 23 chr6 63238858 63239159 -126040395 - LTR16C LTR ERVL -1 490 182 799 249 14 46 chr6 63239650 63239867 -126039687 + MER63A DNA MER1_type 1 210 0 497 314 99 40 chr6 63239907 63240130 -126039424 + MIR SINE MIR 5 240 -22 330 279 23 0 chr6 63241001 63241087 -126038467 + MIR SINE MIR 151 238 -24 392 55 18 0 chr6 63241112 63241167 -126038387 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 302 336 36 58 chr6 63241864 63242001 -126037553 + L2 LINE L2 3121 3254 -18 357 344 16 24 chr6 63242409 63242534 -126037020 - L2 LINE L2 0 3272 3149 212 234 26 13 chr6 63242659 63242736 -126036818 + T-rich Low_complexity Low_complexity 2 79 0 216 333 222 19 chr6 63243021 63243129 -126036425 + MIR3 SINE MIR 60 189 -19 2496 167 95 8 chr6 63243138 63243612 -126035942 - MLT2B2 LTR ERVL 0 515 1 222 298 96 19 chr6 63245096 63245200 -126034354 + L2 LINE L2 3156 3267 -5 818 294 68 14 chr6 63245350 63245646 -126033908 - MARNA DNA Mariner -19 567 256 387 0 0 0 chr6 63245861 63245904 -126033650 + (CA)n Simple_repeat Simple_repeat 2 44 0 284 288 100 18 chr6 63245983 63246148 -126033406 + MIR SINE MIR 38 207 -55 324 0 0 0 chr6 63246222 63246258 -126033296 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 736 304 64 10 chr6 63247096 63247392 -126032162 - MARNA DNA Mariner -19 567 256 351 0 0 0 chr6 63247607 63247646 -126031908 + (CA)n Simple_repeat Simple_repeat 2 40 0 284 288 100 18 chr6 63247725 63247890 -126031664 + MIR SINE MIR 38 207 -55 324 0 0 0 chr6 63247964 63248000 -126031554 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 337 261 99 49 chr6 63248232 63248645 -126030909 + MLT1J LTR MaLR 1 476 -35 342 353 200 8 chr6 63248868 63249103 -126030451 + L2 LINE L2 913 1192 -2122 957 314 72 71 chr6 63249125 63249472 -126030082 + L2 LINE L2 1314 1659 -1655 2112 125 57 20 chr6 63249472 63249823 -126029731 + THE1B LTR MaLR 1 364 0 957 314 72 71 chr6 63249823 63250216 -126029338 + L2 LINE L2 1659 2058 -1256 752 128 0 0 chr6 63250216 63250333 -126029221 - L1PB1 LINE L1 -1 6150 6034 957 314 72 71 chr6 63250333 63250410 -126029144 + L2 LINE L2 2058 2133 -1181 417 265 10 0 chr6 63250444 63250542 -126029012 + L2 LINE L2 3215 3313 0 2125 102 0 18 chr6 63252409 63252744 -126026810 + AluSg SINE Alu 4 333 0 211 140 0 35 chr6 63253965 63254022 -126025532 + (TA)n Simple_repeat Simple_repeat 2 56 0 381 269 187 15 chr6 63254078 63254212 -126025342 - MER5A DNA MER1_type -6 183 27 323 277 44 7 chr6 63254251 63254388 -126025166 + L1ME3A LINE L1 5772 5913 -257 27 49 0 0 chr6 63255616 63255657 -126023897 + AT_rich Low_complexity Low_complexity 1 41 0 487 191 254 16 chr6 63256025 63256151 -126023403 - MER5B DNA MER1_type -16 162 7 1635 93 13 0 chr6 63256713 63256939 -126022615 + MER30 DNA MER1_type 1 229 -1 2158 147 35 48 chr6 63257538 63257973 -126021581 + MSTB1 LTR MaLR 4 432 0 327 25 0 0 chr6 63258066 63258106 -126021448 + (TG)n Simple_repeat Simple_repeat 1 40 0 182 256 26 0 chr6 63260621 63260660 -126018894 + MIR SINE MIR 36 75 -133 7659 25 0 3 chr6 63260812 63262495 -126017059 + L1PA3 LINE L1 4477 6155 0 648 183 0 0 chr6 63262518 63262660 -126016894 + CT-rich Low_complexity Low_complexity 3 144 0 583 255 0 50 chr6 63262670 63262831 -126016723 + MIR SINE MIR 90 242 -20 530 284 71 42 chr6 63264779 63265018 -126014536 - MIR SINE MIR -2 260 15 23 0 0 0 chr6 63265326 63265349 -126014205 + AT_rich Low_complexity Low_complexity 1 23 0 337 161 0 0 chr6 63265388 63265444 -126014110 - L1PB4 LINE L1 -41 6115 6060 * 1390 198 12 6 chr6 63265442 63265765 -126013789 + L1 LINE L1 4851 5175 -971 251 261 84 34 chr6 63266085 63266204 -126013350 - MLT1J LTR MaLR -362 149 25 506 307 68 6 chr6 63266446 63266622 -126012932 + MIR SINE MIR 20 206 -56 1368 146 45 0 chr6 63266763 63266983 -126012571 + MER30 DNA MER1_type 1 230 0 439 361 114 32 chr6 63267169 63267879 -126011675 + L2 LINE L2 1991 2758 -556 321 364 0 12 chr6 63269390 63269735 -126009819 + (CATA)n Simple_repeat Simple_repeat 1 340 0 326 151 0 118 chr6 63270034 63270153 -126009401 - Charlie5 DNA MER1_type -33 2579 2475 2077 146 0 0 chr6 63270397 63270705 -126008849 + AluSx SINE Alu 1 308 -4 190 343 10 78 chr6 63271629 63271731 -126007823 + L2 LINE L2 3150 3244 -28 543 54 33 0 chr6 63271780 63271872 -126007682 + (TA)n Simple_repeat Simple_repeat 1 95 0 28845 115 12 56 chr6 63271872 63275675 -126003879 - L1PA7 LINE L1 -22 6132 2164 180 0 0 0 chr6 63275675 63275695 -126003859 + (TTG)n Simple_repeat Simple_repeat 2 21 0 28845 115 12 56 chr6 63275695 63275922 -126003632 - L1PA7 LINE L1 -3990 2164 1929 212 0 36 0 chr6 63275922 63275950 -126003604 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 28845 115 12 56 chr6 63275950 63278335 -126001219 - L1PA7 LINE L1 -4225 1929 9 297 273 9 27 chr6 63279170 63279280 -126000274 - MIR SINE MIR -42 220 113 194 287 158 40 chr6 63279285 63279386 -126000168 - L2 LINE L2 -2 3270 3158 188 324 0 29 chr6 63279642 63279710 -125999844 - L2 LINE L2 -211 3061 2996 976 106 8 0 chr6 63279710 63279842 -125999712 + AluSq/x SINE Alu 1 133 -180 1483 122 0 9 chr6 63279947 63280161 -125999393 + AluSg/x SINE Alu 89 300 -12 224 313 0 0 chr6 63281117 63281200 -125998354 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 365 324 46 0 chr6 63281364 63281472 -125998082 - L2 LINE L2 0 3313 3201 222 203 94 62 chr6 63282693 63282757 -125996797 + MIR SINE MIR 87 152 -56 375 23 0 0 chr6 63283259 63283303 -125996251 + (TG)n Simple_repeat Simple_repeat 2 45 0 200 324 169 29 chr6 63285005 63285141 -125994413 - L2 LINE L2 -8 3264 3110 438 309 30 52 chr6 63285305 63285490 -125994064 + MIR SINE MIR 16 197 -65 1422 171 100 41 chr6 63285490 63285829 -125993725 + MLT1A1 LTR MaLR 5 363 -2 438 309 30 52 chr6 63285829 63285876 -125993678 + MIR SINE MIR 197 243 -19 243 61 0 0 chr6 63285888 63285921 -125993633 + (CAT)n Simple_repeat Simple_repeat 1 33 0 332 285 63 38 chr6 63286128 63286286 -125993268 + MER5A DNA MER1_type 9 170 -19 351 173 8 0 chr6 63286618 63286700 -125992854 - MSTB1 LTR MaLR -4 428 366 376 339 71 12 chr6 63287001 63287169 -125992385 + MIR3 SINE MIR 19 196 -12 478 276 63 76 chr6 63287324 63287428 -125992126 - MER57A LTR ERV1 -25 378 274 2297 103 0 26 chr6 63287428 63287739 -125991815 - AluSg SINE Alu -7 303 1 478 276 63 76 chr6 63287739 63287949 -125991605 - MER57A LTR ERV1 -129 274 68 336 340 28 35 chr6 63288081 63288225 -125991329 - MIR SINE MIR -86 176 34 536 259 0 0 chr6 63288618 63288730 -125990824 + MER81 DNA DNA 3 114 0 208 403 36 10 chr6 63289568 63289764 -125989790 + L3b LINE CR1 1317 1517 -66 260 346 69 53 chr6 63290002 63290190 -125989364 - MIR3 SINE MIR -13 195 5 180 191 15 132 chr6 63290261 63290329 -125989225 - L2 LINE L2 -69 3244 3185 378 228 44 66 chr6 63291613 63291749 -125987805 + MIR SINE MIR 74 206 -56 570 299 35 43 chr6 63292738 63292969 -125986585 - MIR SINE MIR -2 260 32 221 329 137 48 chr6 63292974 63293120 -125986434 - L2 LINE L2 -185 3087 2929 691 285 24 13 chr6 63293159 63293543 -125986011 - LTR33 LTR ERVL -37 484 15 308 342 9 18 chr6 63294373 63294484 -125985070 - MIR SINE MIR -62 146 37 286 89 18 18 chr6 63295379 63295435 -125984119 + (TA)n Simple_repeat Simple_repeat 2 57 0 213 197 0 0 chr6 63295489 63295550 -125984004 + (TG)n Simple_repeat Simple_repeat 1 61 0 193 269 31 92 chr6 63298479 63298609 -125980945 + MIR SINE MIR 63 184 -78 398 307 106 23 chr6 63299829 63300178 -125979376 + HAL1 LINE L1 1150 1527 -980 25 0 0 0 chr6 63300615 63300640 -125978914 + AT_rich Low_complexity Low_complexity 1 25 0 290 353 45 28 chr6 63301138 63301370 -125978184 + MIR3 SINE MIR 15 259 -3 24 0 0 0 chr6 63302438 63302462 -125977092 + AT_rich Low_complexity Low_complexity 1 24 0 210 118 0 0 chr6 63303640 63303674 -125975880 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 892 235 77 14 chr6 63305049 63305270 -125974284 + MIR SINE MIR 1 235 -27 292 292 231 0 chr6 63305481 63305611 -125973943 - MIR SINE MIR -6 256 97 194 211 0 58 chr6 63305602 63305654 -125973900 + MIR SINE MIR 98 146 -62 * 325 271 85 8 chr6 63306033 63306151 -125973403 + MLT1I LTR MaLR 1 127 -282 461 186 44 26 chr6 63306165 63306278 -125973276 + MLT1I LTR MaLR 295 409 0 1336 11 17 17 chr6 63306867 63307047 -125972507 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 319 171 26 0 chr6 63307056 63307132 -125972422 + GA-rich Low_complexity Low_complexity 4 81 0 588 309 88 53 chr6 63307134 63307620 -125971934 + L1MEd LINE L1 123 625 -5494 303 261 54 89 chr6 63308020 63308223 -125971331 + L1MEd LINE L1 819 1014 -5105 2375 99 0 0 chr6 63308224 63308527 -125971027 - AluSc SINE Alu -4 305 3 270 0 0 0 chr6 63308940 63308970 -125970584 + (TTG)n Simple_repeat Simple_repeat 1 30 0 725 257 18 0 chr6 63309453 63309624 -125969930 - MER5A DNA MER1_type -15 174 1 485 57 0 14 chr6 63309732 63309802 -125969752 + (TTATA)n Simple_repeat Simple_repeat 5 73 0 304 330 0 19 chr6 63310176 63310279 -125969275 - MIR SINE MIR -142 120 20 412 259 44 44 chr6 63311192 63311327 -125968227 - MER5B DNA MER1_type 0 178 44 588 193 260 0 chr6 63311509 63311659 -125967895 + MER5A DNA MER1_type 1 189 0 238 329 14 0 chr6 63311689 63311762 -125967792 + MER5A DNA MER1_type 33 106 -83 851 274 91 27 chr6 63311877 63312256 -125967298 - MLT1J1 LTR MaLR 0 446 63 279 306 41 0 chr6 63312648 63312746 -125966808 - MIR SINE MIR -86 176 75 867 224 16 69 chr6 63312798 63313043 -125966511 + MLT1E LTR MaLR 1 232 -361 1064 219 29 0 chr6 63313068 63313278 -125966276 + MLT1E LTR MaLR 346 561 -32 198 0 0 0 chr6 63314391 63314413 -125965141 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 703 249 161 0 chr6 63314483 63314676 -125964878 + MER58A DNA MER1_type 1 224 0 364 359 42 5 chr6 63314802 63314994 -125964560 - MIR SINE MIR 0 262 64 23 33 0 0 chr6 63315620 63315650 -125963904 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr6 63316623 63316645 -125962909 + (T)n Simple_repeat Simple_repeat 1 22 0 30 27 0 0 chr6 63319022 63319059 -125960495 + AT_rich Low_complexity Low_complexity 1 37 0 1805 219 47 53 chr6 63319376 63319507 -125960047 - MLT1D LTR MaLR -1 504 374 2851 3 0 0 chr6 63319507 63319813 -125959741 + AluY SINE Alu 1 306 -5 1805 219 47 53 chr6 63319813 63320188 -125959366 - MLT1D LTR MaLR -131 374 1 898 272 93 61 chr6 63320284 63320758 -125958796 - LTR33 LTR ERVL -24 497 9 276 340 125 7 chr6 63321145 63321289 -125958265 - MIR SINE MIR -7 255 95 273 305 53 0 chr6 63321295 63321390 -125958164 - L2 LINE L2 0 3313 3214 254 318 12 0 chr6 63321928 63322013 -125957541 - MER117 DNA MER1_type -91 106 21 219 275 30 42 chr6 63323315 63323482 -125956072 + (CATA)n Simple_repeat Simple_repeat 2 166 0 * 275 251 29 58 chr6 63323412 63323583 -125955971 + (CATATA)n Simple_repeat Simple_repeat 6 171 0 253 247 33 44 chr6 63323529 63323711 -125955843 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 516 216 85 15 chr6 63323804 63324003 -125955551 - MER20B DNA MER1_type -45 738 526 776 265 41 9 chr6 63324236 63324455 -125955099 - MER20B DNA MER1_type -557 226 1 647 315 31 0 chr6 63325403 63325657 -125953897 - MIR SINE MIR 0 262 1 22 35 0 0 chr6 63325757 63325786 -125953768 + AT_rich Low_complexity Low_complexity 1 29 0 693 286 12 61 chr6 63327001 63327273 -125952281 + MIR SINE MIR 2 261 -1 716 327 0 0 chr6 63327415 63327623 -125951931 - MIR SINE MIR 0 262 55 2428 74 7 0 chr6 63328100 63328409 -125951145 - AluY SINE Alu 0 311 1 21 71 0 0 chr6 63328946 63328988 -125950566 + AT_rich Low_complexity Low_complexity 1 42 0 188 291 43 60 chr6 63329219 63329336 -125950218 + MIR SINE MIR 117 231 -31 369 304 50 31 chr6 63329514 63329675 -125949879 - MIR3 SINE MIR -28 180 17 272 289 0 13 chr6 63330134 63330210 -125949344 + L2 LINE L2 3237 3311 -2 212 339 29 50 chr6 63331122 63331301 -125948253 + MIR SINE MIR 28 204 -4 222 349 63 16 chr6 63333481 63333607 -125945947 - L2 LINE L2 0 3313 3182 602 334 111 19 chr6 63334070 63334609 -125944945 - L2 LINE L2 -2 3311 2709 782 269 110 69 chr6 63334780 63335245 -125944309 + MLT1G3 LTR MaLR 14 517 -50 28 71 0 0 chr6 63335291 63335347 -125944207 + AT_rich Low_complexity Low_complexity 1 56 0 314 256 68 36 chr6 63335695 63335914 -125943640 + L1ME4a LINE L1 5743 5968 -153 189 0 0 0 chr6 63338853 63338874 -125940680 + (T)n Simple_repeat Simple_repeat 1 21 0 2630 101 19 5 chr6 63341437 63341805 -125937749 + THE1C LTR MaLR 1 373 -2 214 255 255 21 chr6 63341993 63342087 -125937467 + MER5A DNA MER1_type 48 163 -26 * 217 303 46 28 chr6 63342014 63342123 -125937431 - MER5A DNA MER1_type -77 112 2 194 366 70 48 chr6 63342834 63343061 -125936493 + L2 LINE L2 2815 3046 -226 663 260 66 11 chr6 63343149 63343330 -125936224 - MIR SINE MIR -55 207 17 207 339 52 26 chr6 63343354 63343469 -125936085 + L2 LINE L2 3171 3288 -25 546 320 41 20 chr6 63344046 63344243 -125935311 + MIR SINE MIR 31 231 -31 288 250 31 31 chr6 63344673 63344769 -125934785 - MLT1J2 LTR MaLR -241 209 114 26 30 0 0 chr6 63344861 63344894 -125934660 + AT_rich Low_complexity Low_complexity 1 33 0 200 214 18 36 chr6 63345232 63345288 -125934266 - MIR SINE MIR -64 144 90 343 133 0 40 chr6 63345612 63345687 -125933867 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 209 56 0 28 chr6 63346060 63346096 -125933458 + (CAAAAA)n Simple_repeat Simple_repeat 4 38 0 182 255 39 98 chr6 63346379 63346481 -125933073 - L2 LINE L2 0 3313 3218 185 316 158 9 chr6 63346542 63346656 -125932898 + L2 LINE L2 2250 2380 -934 4616 77 10 2 chr6 63346859 63347482 -125932072 - L1PB1 LINE L1 0 6151 5524 274 156 0 0 chr6 63347481 63347526 -125932028 + L1PB1 LINE L1 5482 5526 -625 306 311 44 7 chr6 63347801 63347936 -125931618 + MIR SINE MIR 49 188 -74 267 304 67 14 chr6 63348538 63348678 -125930876 + MIR SINE MIR 50 203 -59 211 298 149 25 chr6 63348887 63349008 -125930546 - MIR SINE MIR -14 248 113 201 323 10 42 chr6 63349002 63349098 -125930456 + MIR SINE MIR 9 101 -161 * 978 188 16 0 chr6 63349174 63349366 -125930188 + L1PB1 LINE L1 6 200 -6663 2753 128 27 16 chr6 63349366 63349810 -125929744 + L1PB1 LINE L1 634 1082 -5781 10048 173 31 59 chr6 63349812 63353461 -125926093 + L1PB1 LINE L1 3310 6851 -16 30 0 0 0 chr6 63353469 63353499 -125926055 + AT_rich Low_complexity Low_complexity 1 30 0 273 75 0 0 chr6 63353502 63353542 -125926012 + (ATG)n Simple_repeat Simple_repeat 1 40 0 710 172 34 28 chr6 63354501 63354737 -125924817 - L1ME2 LINE L1 -8 6154 5885 3683 99 13 8 chr6 63354779 63355313 -125924241 - L1PA11 LINE L1 0 6174 5638 3913 127 13 0 chr6 63355314 63355919 -125923635 + L1P LINE L1 3727 4339 -1807 273 349 83 15 chr6 63355970 63356102 -125923452 - MIR SINE MIR -67 141 1 233 394 58 0 chr6 63356152 63356256 -125923298 + MIR SINE MIR 45 154 -108 342 236 29 14 chr6 63357868 63358008 -125921546 + (TA)n Simple_repeat Simple_repeat 1 142 0 267 271 30 15 chr6 63358053 63358186 -125921368 + (TA)n Simple_repeat Simple_repeat 2 136 0 338 197 131 36 chr6 63358341 63358478 -125921076 + MIR SINE MIR 100 249 -13 199 88 0 59 chr6 63358454 63358488 -125921066 + L2 LINE L2 3271 3302 -11 * 441 299 84 78 chr6 63359323 63359761 -125919793 - L1ME4a LINE L1 -157 5964 5524 22 0 0 0 chr6 63360889 63360911 -125918643 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 63362078 63362108 -125917446 + AT_rich Low_complexity Low_complexity 1 30 0 446 226 126 19 chr6 63362182 63362341 -125917213 + MER5B DNA MER1_type 3 178 0 2135 132 0 0 chr6 63364508 63364818 -125914736 + AluSx SINE Alu 1 310 -2 299 329 35 0 chr6 63365853 63365938 -125913616 + L2 LINE L2 3185 3272 0 6854 151 18 45 chr6 63366048 63367330 -125912224 - L1P LINE L1 -4889 1257 11 234 185 74 0 chr6 63369607 63369661 -125909893 - MIR SINE MIR -74 188 131 1635 193 70 70 chr6 63369860 63370362 -125909192 + MLT1D LTR MaLR 3 504 -1 493 87 0 106 chr6 63372054 63372158 -125907396 - L1PA13 LINE L1 -4 6159 6067 203 156 0 0 chr6 63373056 63373088 -125906466 + GA-rich Low_complexity Low_complexity 1 32 0 23230 95 6 7 chr6 63373543 63373978 -125905576 + L1PA3 LINE L1 1907 2341 -3814 180 0 0 0 chr6 63373978 63373998 -125905556 + (CAA)n Simple_repeat Simple_repeat 2 21 0 23230 95 6 7 chr6 63373998 63377679 -125901875 + L1PA3 LINE L1 2341 6012 -143 14623 61 1 2 chr6 63377791 63380203 -125899351 + L1PA6 LINE L1 3462 5873 -281 314 316 41 0 chr6 63381956 63382054 -125897500 - L2 LINE L2 -10 3303 3202 183 301 68 0 chr6 63382297 63382370 -125897184 - L2 LINE L2 -93 3220 3143 201 342 99 61 chr6 63382427 63382772 -125896782 + L2 LINE L2 2257 2614 -700 391 82 0 0 chr6 63382878 63382927 -125896627 + THE1A LTR MaLR 307 355 0 796 291 137 28 chr6 63383107 63383465 -125896089 + L2 LINE L2 2917 3313 0 192 77 0 0 chr6 63385498 63385524 -125894030 + (A)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chr6 63386797 63386822 -125892732 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 229 313 62 45 chr6 63387462 63387574 -125891980 - L2 LINE L2 -5 3267 3154 331 316 26 18 chr6 63388767 63388881 -125890673 + MIR SINE MIR 58 172 -90 1086 197 152 10 chr6 63390171 63390460 -125889094 - MER2 DNA MER2_type -14 331 2 319 338 33 52 chr6 63391142 63391352 -125888202 - MIR SINE MIR -50 212 7 365 109 16 0 chr6 63392094 63392158 -125887396 + (TC)n Simple_repeat Simple_repeat 2 66 0 232 91 0 73 chr6 63393364 63393419 -125886135 + (TATAG)n Simple_repeat Simple_repeat 5 55 0 642 178 0 0 chr6 63393433 63393540 -125886014 - MER58B DNA MER1_type -3 338 232 346 311 59 22 chr6 63394234 63394369 -125885185 + MIR3 SINE MIR 69 208 0 278 241 38 13 chr6 63396070 63396149 -125883405 + MIR SINE MIR 175 255 -7 2222 89 17 3 chr6 63396478 63396770 -125882784 - AluSc SINE Alu -12 297 2 1098 252 74 47 chr6 63396866 63397271 -125882283 + MLT1J2 LTR MaLR 35 450 0 216 307 80 0 chr6 63397400 63397475 -125882079 + L2 LINE L2 3228 3308 -5 740 261 26 52 chr6 63397540 63397770 -125881784 + MIR SINE MIR 24 247 -15 1379 258 134 16 chr6 63398885 63399334 -125880220 - MLT1D LTR MaLR -3 502 1 1603 137 52 0 chr6 63400291 63400540 -125879014 - AluSx SINE Alu -50 262 1 266 255 189 28 chr6 63401070 63401176 -125878378 + MIR3 SINE MIR 69 191 -17 188 344 0 0 chr6 63402544 63402605 -125876949 - L2 LINE L2 -92 3221 3161 391 218 45 6 chr6 63453895 63454051 -125825503 + (TA)n Simple_repeat Simple_repeat 1 162 0 21 0 0 0 chr6 63454458 63454479 -125825075 + AT_rich Low_complexity Low_complexity 1 21 0 240 341 111 31 chr6 63454502 63454738 -125824816 + MIR SINE MIR 1 253 -9 381 288 65 7 chr6 63454770 63454909 -125824645 - MIR SINE MIR -7 255 109 204 174 65 22 chr6 63455945 63455991 -125823563 - MIR SINE MIR -112 150 103 220 298 96 10 chr6 63456081 63456185 -125823369 - MIR SINE MIR -119 143 31 376 20 39 0 chr6 63456346 63456397 -125823157 - MADE1 DNA Mariner 0 80 28 292 0 51 0 chr6 63456453 63456492 -125823062 + MADE1 DNA Mariner 10 50 -30 329 174 224 20 chr6 63457469 63457567 -125821987 + L2 LINE L2 3186 3303 -10 260 330 123 17 chr6 63457659 63457838 -125821716 - L2 LINE L2 -1 3312 3115 2098 99 3 3 chr6 63459882 63460206 -125819348 + AluSp SINE Alu 1 324 0 226 184 0 53 chr6 63461018 63461094 -125818460 + L1ME LINE L1 5360 5431 -690 2301 94 3 28 chr6 63461336 63461656 -125817898 + AluSx SINE Alu 1 312 0 345 292 58 0 chr6 63461795 63461915 -125817639 - MLT1L LTR MaLR -347 268 142 347 141 16 0 chr6 63462145 63462209 -125817345 + GA-rich Low_complexity Low_complexity 4 68 0 432 0 0 0 chr6 63463970 63464018 -125815536 + (TA)n Simple_repeat Simple_repeat 2 49 0 205 320 48 58 chr6 63464186 63464289 -125815265 - MER5A DNA MER1_type -25 164 63 * 260 309 31 21 chr6 63464205 63464302 -125815252 + MER5A DNA MER1_type 55 152 -37 22 35 0 0 chr6 63464659 63464688 -125814866 + AT_rich Low_complexity Low_complexity 1 29 0 811 117 7 15 chr6 63465032 63465169 -125814385 - L1MA5 LINE L1 -5 6295 6160 21 0 0 0 chr6 63467052 63467073 -125812481 + AT_rich Low_complexity Low_complexity 1 21 0 674 274 119 44 chr6 63468082 63469059 -125810495 + L1ME3A LINE L1 4382 5434 -736 349 264 63 17 chr6 63469195 63469369 -125810185 + L1ME3A LINE L1 5784 5965 -205 878 199 37 32 chr6 63470091 63470307 -125809247 - MER20 DNA MER1_type -2 217 1 22 0 0 0 chr6 63470896 63470918 -125808636 + AT_rich Low_complexity Low_complexity 1 22 0 2329 152 49 0 chr6 63472652 63473041 -125806513 - L1MA7 LINE L1 -390 5901 5494 1636 149 25 87 chr6 63473048 63473451 -125806103 + L1MA7 LINE L1 5914 6291 0 278 206 55 14 chr6 63473722 63473795 -125805759 + MLT1L LTR MaLR 8 83 -532 388 267 116 69 chr6 63473970 63474202 -125805352 + MLT1L LTR MaLR 370 612 -3 790 305 58 48 chr6 63474737 63475137 -125804417 + LTR16A LTR ERVL 18 421 -29 3547 302 41 20 chr6 63475174 63475765 -125803789 + HERV16 LTR ERVL 5 583 -4413 1013 206 23 23 chr6 63475765 63475984 -125803570 - MER20 DNA MER1_type 0 219 1 3547 302 41 20 chr6 63475984 63476672 -125802882 + HERV16 LTR ERVL 583 1310 -3686 1112 322 91 30 chr6 63476793 63477786 -125801768 + HERV16 LTR ERVL 2695 3754 -1900 314 368 8 8 chr6 63477817 63477934 -125801620 + L2 LINE L2 3156 3272 0 2123 117 3 0 chr6 63477970 63478261 -125801293 - AluSx SINE Alu 0 312 21 811 167 0 0 chr6 63478964 63479102 -125800452 + L1MC1 LINE L1 5617 5754 -590 1297 160 9 0 chr6 63479203 63479422 -125800132 + L1MC1 LINE L1 5967 6187 -146 269 70 0 68 chr6 63479422 63479473 -125800081 - MADE1 DNA Mariner -38 42 1 802 132 0 0 chr6 63479473 63479594 -125799960 + L1MC1 LINE L1 6194 6314 -19 353 293 74 70 chr6 63479922 63480273 -125799281 + MLT1J LTR MaLR 9 361 -150 5682 123 14 0 chr6 63480965 63481998 -125797556 - L1PA16 LINE L1 -9 6157 5107 363 346 8 23 chr6 63482821 63482954 -125796600 - L2 LINE L2 -2 3270 3140 267 349 189 25 chr6 63484958 63485233 -125794321 - L2 LINE L2 -2 3270 2951 186 376 0 11 chr6 63485357 63485450 -125794104 - L2 LINE L2 -565 2749 2658 675 292 47 47 chr6 63485562 63485949 -125793605 + HAL1 LINE L1 13 399 -2108 2238 290 70 57 chr6 63486013 63486426 -125793128 + HAL1 LINE L1 535 941 -1566 342 91 0 0 chr6 63486426 63486481 -125793073 + (TG)n Simple_repeat Simple_repeat 2 56 0 2238 290 70 57 chr6 63486481 63486581 -125792973 + HAL1 LINE L1 941 1038 -1469 2035 138 3 6 chr6 63486581 63486892 -125792662 - AluSx SINE Alu -2 310 1 2238 290 70 57 chr6 63486892 63487391 -125792163 + HAL1 LINE L1 1038 1572 -935 2215 118 0 0 chr6 63487391 63487688 -125791866 + AluSx SINE Alu 3 299 -13 2238 290 70 57 chr6 63487688 63488010 -125791544 + HAL1 LINE L1 1572 1888 -619 536 309 108 16 chr6 63488901 63489215 -125790339 + L2 LINE L2 1715 2057 -1257 243 341 167 34 chr6 63489410 63490122 -125789432 + L2 LINE L2 2051 2857 -457 1663 176 10 10 chr6 63491145 63491441 -125788113 + AluJo SINE Alu 1 296 -16 24 0 0 0 chr6 63491465 63491489 -125788065 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 63493622 63493643 -125785911 + AT_rich Low_complexity Low_complexity 1 21 0 901 229 144 43 chr6 63493647 63494183 -125785371 - L1MEd LINE L1 -4872 1247 658 1304 303 46 7 chr6 63494761 63495177 -125784377 - LTR16A LTR ERVL -3 447 16 264 273 0 39 chr6 63495541 63495618 -125783936 - MLT1J2 LTR MaLR -318 132 59 616 224 19 131 chr6 63495933 63496201 -125783353 + LTR27 LTR ERV1 397 634 -2 624 133 0 31 chr6 63496427 63496555 -125782999 - L1MB8 LINE L1 -37 6141 6018 * 1255 218 49 9 chr6 63496533 63496881 -125782673 + L1M4 LINE L1 3614 3975 -2171 718 136 8 0 chr6 63496881 63497006 -125782548 + L1M4 LINE L1 5343 5468 -710 210 232 29 29 chr6 63498388 63498457 -125781097 - MIR3 SINE MIR -8 200 132 2253 97 3 3 chr6 63499242 63499552 -125780002 + AluSq SINE Alu 1 310 -3 467 165 21 21 chr6 63500134 63500231 -125779323 - AluS SINE Alu -216 97 1 226 224 0 0 chr6 63501067 63501116 -125778438 + L2 LINE L2 3265 3313 0 256 200 0 17 chr6 63501343 63501403 -125778151 + FLAM SINE Alu 71 129 -4 191 35 0 35 chr6 63501403 63501432 -125778122 + (TG)n Simple_repeat Simple_repeat 1 28 0 461 288 18 0 chr6 63501469 63501580 -125777974 + MER81 DNA DNA 1 113 -1 25 0 0 0 chr6 63502851 63502876 -125776678 + AT_rich Low_complexity Low_complexity 1 25 0 1963 256 37 11 chr6 63502876 63503419 -125776135 - L1ME1 LINE L1 -31 6135 5579 1946 132 139 24 chr6 63503419 63503799 -125775755 - MSTA LTR MaLR 0 428 5 791 96 8 24 chr6 63503808 63503933 -125775621 - MSTA-int LTR MaLR 0 1580 1458 * 2610 126 8 2 chr6 63503932 63504330 -125775224 - MSTA-int LTR MaLR -1175 405 6 1575 163 107 42 chr6 63504335 63504672 -125774882 - MSTA LTR MaLR 0 428 70 1247 254 20 45 chr6 63504681 63505348 -125774206 - L1ME1 LINE L1 -615 5551 4901 22 0 0 0 chr6 63505352 63505374 -125774180 + AT_rich Low_complexity Low_complexity 1 22 0 4707 190 20 31 chr6 63505374 63505745 -125773809 - L1MA9 LINE L1 -38 6860 6487 279 0 0 0 chr6 63505745 63505776 -125773778 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4707 190 20 31 chr6 63505776 63506898 -125772656 - L1MA9 LINE L1 -411 6487 5374 213 132 0 0 chr6 63506898 63506936 -125772618 + (TC)n Simple_repeat Simple_repeat 2 39 0 279 96 72 0 chr6 63506939 63507022 -125772532 + (TA)n Simple_repeat Simple_repeat 2 90 0 9674 237 38 33 chr6 63507022 63507509 -125772045 - L1MA9 LINE L1 -1329 5403 4920 1919 140 0 19 chr6 63507509 63507816 -125771738 - AluSx SINE Alu 0 312 12 9674 237 38 33 chr6 63507816 63508679 -125770875 - L1MA9 LINE L1 -1812 4920 4062 933 211 0 0 chr6 63508679 63508845 -125770709 - FRAM SINE Alu 0 166 1 9674 237 38 33 chr6 63508845 63512021 -125767533 - L1MA9 LINE L1 -2670 4062 1186 1708 286 68 48 chr6 63512111 63512984 -125766570 - L1MA9 LINE L1 -5207 1446 15 328 283 25 25 chr6 63513075 63513195 -125766359 - L1M3d LINE L1 -5763 128 9 2517 258 66 15 chr6 63513199 63514196 -125765358 - L1M4 LINE L1 -1243 4903 3856 2352 219 40 3 chr6 63514207 63514824 -125764730 + L1 LINE L1 4333 4972 -1174 2197 117 42 31 chr6 63514824 63515184 -125764370 - THE1B LTR MaLR 0 364 1 713 224 83 43 chr6 63515187 63515464 -125764090 + pTR5 LTR ERV1 741 1028 -1410 4379 122 105 22 chr6 63515543 63516306 -125763248 + LTR12 LTR ERV1 1 826 0 913 73 81 0 chr6 63516306 63516429 -125763125 + LTR12 LTR ERV1 582 714 0 5571 103 43 2 chr6 63516430 63517601 -125761953 + L1PB1 LINE L1 4970 6176 0 240 307 69 20 chr6 63517606 63517707 -125761847 - MIR SINE MIR -143 119 14 260 369 0 17 chr6 63518500 63518632 -125760922 + MIR SINE MIR 27 153 -76 484 296 186 17 chr6 63521166 63521511 -125758043 - L1ME4a LINE L1 0 6121 5719 1659 199 117 30 chr6 63522477 63522940 -125756614 + MLT1D LTR MaLR 3 505 0 2203 98 27 0 chr6 63523289 63523585 -125755969 - AluSp SINE Alu -8 305 2 4185 121 46 4 chr6 63523686 63524405 -125755149 + L1MA5A LINE L1 5547 6295 -2 370 248 0 76 chr6 63525517 63525622 -125753932 - MER81 DNA DNA -11 103 7 24 0 0 0 chr6 63525829 63525853 -125753701 + AT_rich Low_complexity Low_complexity 1 24 0 2078 234 77 44 chr6 63526985 63527582 -125751972 - MLT1E2 LTR MaLR -7 619 1 1745 146 8 0 chr6 63528128 63528388 -125751166 + AluSc SINE Alu 32 293 -16 622 330 30 26 chr6 63528388 63528618 -125750936 - MER115 DNA AcHobo -454 239 9 325 352 30 26 chr6 63529411 63529678 -125749876 + HAL1b LINE L1 548 815 -533 22 56 0 0 chr6 63529781 63529817 -125749737 + AT_rich Low_complexity Low_complexity 1 36 0 1067 217 0 5 chr6 63529904 63530107 -125749447 - MLT1A2 LTR MaLR 0 374 173 180 111 0 0 chr6 63530277 63530304 -125749250 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 332 271 41 16 chr6 63530304 63530426 -125749128 - L2 LINE L2 -1605 1709 1585 1824 176 43 0 chr6 63530739 63531062 -125748492 - MER7A DNA MER2_type -4 342 8 30 45 0 0 chr6 63531683 63531727 -125747827 + AT_rich Low_complexity Low_complexity 1 44 0 895 138 13 0 chr6 63533059 63533218 -125746336 - L1MA8 LINE L1 -4 6287 6127 333 363 160 8 chr6 63533841 63534097 -125745457 - L2 LINE L2 -788 2526 2232 191 312 65 11 chr6 63537081 63537174 -125742380 + MIR SINE MIR 38 135 -73 21 36 0 0 chr6 63537197 63537225 -125742329 + AT_rich Low_complexity Low_complexity 1 28 0 300 53 0 0 chr6 63537781 63537819 -125741735 + (TA)n Simple_repeat Simple_repeat 1 38 0 429 330 117 33 chr6 63540177 63540574 -125738980 - L1M4 LINE L1 -1546 4600 4145 2150 133 0 9 chr6 63540574 63540889 -125738665 - AluSx SINE Alu 0 312 1 429 330 117 33 chr6 63540889 63541031 -125738523 - L1M4 LINE L1 -2001 4145 4016 835 188 67 18 chr6 63541057 63541222 -125738332 - FAM SINE Alu -2 173 1 542 335 36 28 chr6 63541668 63541916 -125737638 - MIR SINE MIR -11 251 2 191 311 14 14 chr6 63541919 63541993 -125737561 - L2 LINE L2 -545 2769 2696 201 94 0 0 chr6 63543115 63543147 -125736407 + (CA)n Simple_repeat Simple_repeat 1 32 0 644 198 154 6 chr6 63544333 63544515 -125735039 + MER33 DNA MER1_type 1 209 -115 566 259 48 6 chr6 63544612 63544778 -125734776 - L1MD2 LINE L1 0 6359 6187 513 275 68 34 chr6 63544873 63545080 -125734474 - L2 LINE L2 0 3313 3100 4820 120 8 1 chr6 63545091 63545818 -125733736 - L1PA16 LINE L1 -1 6165 5434 3093 152 37 17 chr6 63545819 63546564 -125732990 + L1MA10 LINE L1 4724 5481 -728 3755 173 100 18 chr6 63546624 63547660 -125731894 + Charlie1 DNA MER1_type 1556 2755 -6 216 0 0 0 chr6 63548867 63548891 -125730663 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2148 98 0 11 chr6 63548950 63549236 -125730318 - AluSq SINE Alu 0 313 31 371 277 50 0 chr6 63549286 63549387 -125730167 + MIR SINE MIR 157 262 0 212 241 0 19 chr6 63549834 63549888 -125729666 + L2 LINE L2 3261 3313 0 1324 244 39 68 chr6 63550416 63550899 -125728655 + L1ME1 LINE L1 5667 6135 -31 484 263 82 110 chr6 63550475 63551094 -125728460 + L1MA10 LINE L1 5733 6334 0 * 1600 187 0 35 chr6 63551938 63552254 -125727300 - AluJo SINE Alu -7 305 1 866 266 68 78 chr6 63552461 63552920 -125726634 - L2 LINE L2 0 3313 2860 213 81 14 68 chr6 63553301 63553308 -125726246 + (CAA)n Simple_repeat Simple_repeat 2 8 -63 1286 161 106 59 chr6 63553308 63553581 -125725973 + AluJb SINE Alu 1 286 -16 213 81 14 68 chr6 63553581 63553647 -125725907 + (CAA)n Simple_repeat Simple_repeat 8 71 0 479 200 18 9 chr6 63554463 63554573 -125724981 - LTR37B LTR ERV1 -28 440 330 746 216 85 85 chr6 63554639 63554652 -125724902 + LTR37B LTR ERV1 5 17 -451 2297 108 0 0 chr6 63554652 63554949 -125724605 + AluSg SINE Alu 1 297 -13 746 216 85 85 chr6 63554949 63555371 -125724183 + LTR37B LTR ERV1 16 440 -28 419 284 211 14 chr6 63556163 63556381 -125723173 - MIR SINE MIR 0 262 2 21 36 0 0 chr6 63556383 63556411 -125723143 + AT_rich Low_complexity Low_complexity 1 28 0 221 0 35 0 chr6 63556612 63556641 -125722913 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 200 285 66 88 chr6 63557869 63558006 -125721548 + L3b LINE CR1 1241 1374 -209 5412 53 22 7 chr6 63558378 63559104 -125720450 + L1PA7 LINE L1 5436 6171 0 2122 124 0 0 chr6 63559587 63559877 -125719677 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr6 63560413 63560436 -125719118 + AT_rich Low_complexity Low_complexity 1 23 0 1383 115 31 31 chr6 63560717 63560943 -125718611 - L1PA10 LINE L1 -4 6164 5939 225 0 0 0 chr6 63561713 63561738 -125717816 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2089 103 4 0 chr6 63561742 63562015 -125717539 - AluSc SINE Alu -35 274 1 2109 125 3 3 chr6 63562426 63562730 -125716824 - AluSx SINE Alu -8 304 1 839 304 122 39 chr6 63563634 63564150 -125715404 + L2 LINE L2 2352 2910 -404 489 237 187 7 chr6 63566652 63566791 -125712763 + MER63 DNA MER1_type 671 1688 0 192 184 0 0 chr6 63566791 63566829 -125712725 - MIR SINE MIR -56 206 169 653 251 74 11 chr6 63566941 63567116 -125712438 - MIR SINE MIR -6 256 71 234 0 0 0 chr6 63567477 63567503 -125712051 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 203 282 26 39 chr6 63569800 63569878 -125709676 - L2 LINE L2 -10 3303 3227 181 189 27 0 chr6 63570106 63570143 -125709411 + MIR SINE MIR 221 258 -4 398 258 0 25 chr6 63570690 63570810 -125708744 - LTR33A LTR ERVL 0 523 407 503 202 77 5 chr6 63572306 63572488 -125707066 - MLT1E1 LTR MaLR -2 652 363 5274 63 1 6 chr6 63572489 63573167 -125706387 + L1PA8 LINE L1 5428 6102 -70 1897 162 17 0 chr6 63573370 63573672 -125705882 - AluJb SINE Alu -5 307 1 25 0 0 0 chr6 63573825 63573850 -125705704 + AT_rich Low_complexity Low_complexity 1 25 0 189 194 28 0 chr6 63576782 63576818 -125702736 - L2 LINE L2 -15 3298 3262 35 83 0 0 chr6 63576840 63576924 -125702630 + AT_rich Low_complexity Low_complexity 1 84 0 3551 227 32 25 chr6 63577001 63577812 -125701742 - MER21B LTR ERV1 -2 861 45 292 197 13 0 chr6 63577947 63578023 -125701531 + (TA)n Simple_repeat Simple_repeat 2 78 0 458 247 11 26 chr6 63578771 63578961 -125700593 + L1 LINE L1 2901 3087 -3059 967 148 122 26 chr6 63578961 63579052 -125700502 + L1MA9 LINE L1 6062 6143 -169 192 77 0 0 chr6 63579052 63579078 -125700476 + (CA)n Simple_repeat Simple_repeat 1 26 0 967 148 122 26 chr6 63579078 63579215 -125700339 + L1MA9 LINE L1 6143 6312 0 461 257 133 24 chr6 63579272 63579611 -125699943 + L1 LINE L1 3112 3487 -2659 29 28 0 0 chr6 63579627 63579663 -125699891 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr6 63580094 63580119 -125699435 + AT_rich Low_complexity Low_complexity 1 25 0 194 358 0 0 chr6 63580159 63580226 -125699328 + MIR SINE MIR 66 132 -76 1215 248 74 22 chr6 63582825 63583269 -125696285 - MER69 DNA AcHobo -1 2525 2059 37577 33 24 1 chr6 63583271 63588687 -125690867 - L1PA3 LINE L1 -8 6147 606 266 243 0 0 chr6 63588689 63588759 -125690795 - MER69 DNA AcHobo -447 2079 2010 1269 306 125 2 chr6 63588842 63589257 -125690297 - MER69 DNA AcHobo -751 475 10 386 332 128 15 chr6 63589336 63589679 -125689875 - L2 LINE L2 -2179 1135 754 1864 188 18 51 chr6 63589776 63590248 -125689306 + MER89 LTR ERV1 1 556 -3 238 393 84 0 chr6 63590507 63590614 -125688940 - L2 LINE L2 -2908 406 291 259 154 31 0 chr6 63591111 63591176 -125688378 + CT-rich Low_complexity Low_complexity 1 67 0 27 29 0 0 chr6 63591682 63591716 -125687838 + AT_rich Low_complexity Low_complexity 1 34 0 225 108 0 0 chr6 63592943 63592980 -125686574 + (A)n Simple_repeat Simple_repeat 1 37 0 505 346 15 0 chr6 63594840 63595042 -125684512 + MIR SINE MIR 3 207 -55 180 0 0 0 chr6 63595537 63595557 -125683997 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 837 264 40 22 chr6 63596619 63596846 -125682708 + MIR SINE MIR 5 235 -27 22 0 0 0 chr6 63597267 63597289 -125682265 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 63597428 63597451 -125682103 + AT_rich Low_complexity Low_complexity 1 23 0 369 271 49 31 chr6 63598380 63598428 -125681126 + MLT1I LTR MaLR 130 176 -233 1192 213 9 0 chr6 63598428 63598649 -125680905 + MER58A DNA MER1_type 2 224 0 369 271 49 31 chr6 63598649 63598796 -125680758 + MLT1I LTR MaLR 176 358 -51 259 336 8 64 chr6 63600483 63600608 -125678946 - L2 LINE L2 -2 3270 3153 309 292 44 51 chr6 63600760 63600897 -125678657 - MIR SINE MIR -7 255 120 490 274 73 39 chr6 63600925 63601104 -125678450 + MLT1J2 LTR MaLR 266 450 0 22 35 0 0 chr6 63602211 63602240 -125677314 + AT_rich Low_complexity Low_complexity 1 29 0 1080 261 99 43 chr6 63603028 63603491 -125676063 + L2 LINE L2 2824 3312 -1 185 304 87 0 chr6 63604156 63604248 -125675306 - MIR SINE MIR -114 148 49 243 318 19 28 chr6 63604294 63604401 -125675153 - MIR SINE MIR -71 191 86 234 304 34 108 chr6 63605001 63605094 -125674460 + MIR3 SINE MIR 46 126 -82 12572 153 12 1 chr6 63605094 63606709 -125672845 + L1PA13 LINE L1 3037 4658 -1505 2201 117 0 0 chr6 63606709 63607008 -125672546 + AluSg SINE Alu 1 299 -11 12572 153 12 1 chr6 63607008 63608513 -125671041 + L1PA13 LINE L1 4658 6144 -19 234 304 34 108 chr6 63608513 63608567 -125670987 + MIR3 SINE MIR 126 182 -26 261 0 0 0 chr6 63608967 63608996 -125670558 + (CA)n Simple_repeat Simple_repeat 1 29 0 383 327 94 15 chr6 63610133 63610335 -125669219 - MIR SINE MIR -8 254 37 792 266 104 0 chr6 63610477 63610699 -125668855 - MIR SINE MIR -17 245 1 27 29 0 0 chr6 63611065 63611099 -125668455 + AT_rich Low_complexity Low_complexity 1 34 0 1844 141 0 37 chr6 63611103 63611400 -125668154 - AluSx SINE Alu -26 286 1 439 125 0 34 chr6 63612116 63612204 -125667350 + (GAA)n Simple_repeat Simple_repeat 3 87 0 1872 132 33 0 chr6 63613612 63613914 -125665640 + AluSx SINE Alu 1 311 0 980 199 44 19 chr6 63614172 63614378 -125665176 - MER20 DNA MER1_type -2 217 7 2004 244 46 19 chr6 63615828 63616397 -125663157 - L1ME1 LINE L1 -51 6115 5532 324 0 0 0 chr6 63616626 63616662 -125662892 + (TG)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chr6 63616881 63616910 -125662644 + AT_rich Low_complexity Low_complexity 1 29 0 672 168 62 25 chr6 63618505 63618666 -125660888 - MER58 DNA MER1_type 0 2420 2254 807 107 38 0 chr6 63618733 63618864 -125660690 + L1PB1 LINE L1 5660 5795 -356 183 56 111 0 chr6 63618864 63618918 -125660636 + (TA)n Simple_repeat Simple_repeat 2 61 0 2477 117 8 0 chr6 63618918 63619285 -125660269 + L1PB1 LINE L1 5775 6144 -7 22 35 0 0 chr6 63619323 63619352 -125660202 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 63619489 63619513 -125660041 + AT_rich Low_complexity Low_complexity 1 24 0 243 341 167 34 chr6 63620985 63621697 -125657857 - L2 LINE L2 -457 2857 2051 595 291 112 16 chr6 63621892 63622205 -125657349 - L2 LINE L2 -1257 2057 1715 23 0 0 0 chr6 63622501 63622524 -125657030 + AT_rich Low_complexity Low_complexity 1 23 0 259 274 0 0 chr6 63623219 63623281 -125656273 + GA-rich Low_complexity Low_complexity 3 64 0 220 284 232 0 chr6 63624008 63624103 -125655451 - MER91A DNA MER1_type -1 195 79 1578 352 135 17 chr6 63624124 63625490 -125654064 + L2 LINE L2 1546 3068 -204 461 272 22 0 chr6 63625491 63625627 -125653927 + MER58C DNA MER1_type 7 145 -70 348 175 16 0 chr6 63625688 63625751 -125653803 + MER58C DNA MER1_type 152 215 0 357 371 86 11 chr6 63625797 63625972 -125653582 + L2 LINE L2 3080 3267 -5 2134 105 0 3 chr6 63626631 63626927 -125652627 + AluSx SINE Alu 1 295 -17 22 56 0 0 chr6 63627095 63627131 -125652423 + AT_rich Low_complexity Low_complexity 1 36 0 412 275 180 9 chr6 63627411 63627622 -125651932 - MIR SINE MIR -10 252 6 404 311 8 0 chr6 63627958 63628090 -125651464 + LTR16C LTR ERVL 349 481 -10 315 325 118 28 chr6 63629375 63629587 -125649967 + MIR SINE MIR 5 235 -27 276 279 0 0 chr6 63629710 63629778 -125649776 + MIR SINE MIR 192 259 -3 22 70 0 0 chr6 63629788 63629831 -125649723 + AT_rich Low_complexity Low_complexity 1 43 0 188 188 203 0 chr6 63629870 63629939 -125649615 - L3b LINE CR1 -136 1447 1365 2218 113 0 0 chr6 63630794 63631086 -125648468 + AluSg SINE Alu 1 292 -18 854 203 27 11 chr6 63631242 63631429 -125648125 - MER3 DNA MER1_type -1 208 19 401 202 20 20 chr6 63631916 63632015 -125647539 - MIR SINE MIR -108 154 56 21 0 0 0 chr6 63632748 63632769 -125646785 + AT_rich Low_complexity Low_complexity 1 21 0 239 337 79 68 chr6 63633313 63633503 -125646051 + MLT1K LTR MaLR 126 317 -271 1680 174 22 48 chr6 63633800 63633846 -125645708 + MER7A DNA MER2_type 1 47 -2991 2075 130 0 0 chr6 63633846 63634131 -125645423 + AluSq SINE Alu 13 297 -16 1680 174 22 48 chr6 63634131 63634441 -125645113 + MER7A DNA MER2_type 47 346 0 848 123 0 0 chr6 63635918 63636032 -125643522 - AluJb SINE Alu -17 295 182 994 180 42 0 chr6 63636074 63636263 -125643291 - MER20 DNA MER1_type 0 219 23 254 281 53 35 chr6 63636506 63636620 -125642934 + L2 LINE L2 3152 3267 -5 440 319 106 90 chr6 63636785 63637440 -125642114 + L2 LINE L2 2484 3176 -137 396 59 0 0 chr6 63637440 63637491 -125642063 + (TG)n Simple_repeat Simple_repeat 2 52 0 440 319 106 90 chr6 63637491 63637632 -125641922 + L2 LINE L2 3176 3313 0 739 97 97 0 chr6 63637829 63637943 -125641611 - MER85 DNA T2_type -14 125 1 206 217 43 22 chr6 63637997 63638089 -125641465 + (TTA)n Simple_repeat Simple_repeat 3 96 0 337 374 101 5 chr6 63639104 63639323 -125640231 + MIR SINE MIR 20 259 -3 2747 188 87 53 chr6 63640512 63641247 -125638307 + LTR48 LTR ERV1 2 761 -26 263 27 0 27 chr6 63641271 63641308 -125638246 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 916 234 32 36 chr6 63641333 63641581 -125637973 + MLT1D LTR MaLR 1 247 -258 233 247 0 56 chr6 63642180 63642269 -125637285 + GA-rich Low_complexity Low_complexity 1 84 0 1093 247 139 6 chr6 63643528 63643844 -125635710 + MLT1E2 LTR MaLR 13 370 -256 294 133 10 174 chr6 63643860 63643958 -125635596 + LTR38B LTR ERV1 10 91 -519 2257 238 76 29 chr6 63643960 63644661 -125634893 - MER50 LTR ERV1 0 734 1 267 162 99 117 chr6 63645142 63645253 -125634301 + LTR38 LTR ERV1 448 556 0 1205 243 4 0 chr6 63645254 63645513 -125634041 + MLT1E2 LTR MaLR 367 626 0 242 272 49 0 chr6 63646375 63646456 -125633098 - L1MC/D LINE L1 -2278 5530 5446 438 313 90 0 chr6 63646526 63646692 -125632862 - MIR SINE MIR -74 188 8 482 289 109 32 chr6 63646713 63647025 -125632529 - L1MC/D LINE L1 -756 5390 5055 1012 147 0 37 chr6 63647646 63647809 -125631745 - AluJb SINE Alu -35 277 121 218 213 0 0 chr6 63647922 63647969 -125631585 + A-rich Low_complexity Low_complexity 1 47 0 207 122 102 41 chr6 63648369 63648418 -125631136 + L3 LINE CR1 802 853 -724 429 232 0 0 chr6 63648474 63648569 -125630985 + MER3 DNA MER1_type 74 168 -41 814 237 175 9 chr6 63648584 63648909 -125630645 + MER3 DNA MER1_type 2246 2624 0 4418 184 40 24 chr6 63648993 63649961 -125629593 + L1MB3 LINE L1 5145 6133 -50 2243 89 14 0 chr6 63649961 63650253 -125629301 + AluY SINE Alu 1 296 -15 4418 184 40 24 chr6 63650253 63650302 -125629252 + L1MB3 LINE L1 6133 6180 -3 416 267 113 92 chr6 63650320 63650612 -125628942 + L3 LINE CR1 1152 1449 -128 541 201 50 50 chr6 63650824 63650983 -125628571 + MER103 DNA DNA 3 161 -5 254 340 181 21 chr6 63651141 63651285 -125628269 - L2 LINE L2 -1 3271 3105 899 193 18 6 chr6 63651520 63651691 -125627863 - MER2 DNA MER2_type -172 173 1 742 299 42 4 chr6 63651910 63652151 -125627403 + MIR SINE MIR 13 262 0 468 302 112 26 chr6 63652315 63652346 -125627208 + MIR SINE MIR 3 30 -232 1937 162 0 25 chr6 63652346 63652661 -125626893 + AluJo SINE Alu 1 307 -5 468 302 112 26 chr6 63652661 63652861 -125626693 + MIR SINE MIR 30 254 -8 303 49 0 0 chr6 63654408 63654449 -125625105 + (TG)n Simple_repeat Simple_repeat 2 42 0 645 231 199 0 chr6 63654608 63654824 -125624730 - MER5C DNA MER1_type -34 290 32 1059 238 3 59 chr6 63654992 63655332 -125624222 + L1MA9 LINE L1 5951 6271 -41 292 309 67 33 chr6 63655348 63655600 -125623954 + L2 LINE L2 2768 3044 -228 214 258 0 32 chr6 63655702 63655795 -125623759 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 355 213 35 0 chr6 63655797 63655938 -125623616 + (TA)n Simple_repeat Simple_repeat 1 146 0 1831 158 3 0 chr6 63655942 63656226 -125623328 - AluSx SINE Alu -25 287 3 362 301 49 28 chr6 63656268 63656411 -125623143 + L2 LINE L2 3167 3312 -1 1090 252 22 4 chr6 63658248 63658522 -125621032 + LTR16C LTR ERVL 213 491 0 184 205 26 0 chr6 63658938 63658977 -125620577 - MIR SINE MIR -6 256 217 1379 304 168 28 chr6 63659379 63660433 -125619121 - L2 LINE L2 -67 3246 2035 22 56 0 0 chr6 63661578 63661614 -125617940 + AT_rich Low_complexity Low_complexity 1 36 0 304 351 123 7 chr6 63661637 63661791 -125617763 - L2 LINE L2 0 3272 3101 21 0 0 0 chr6 63661836 63661857 -125617697 + AT_rich Low_complexity Low_complexity 1 21 0 1213 189 47 128 chr6 63661917 63662257 -125617297 + MLT1A2 LTR MaLR 1 304 -70 904 166 18 12 chr6 63662257 63662420 -125617134 + FRAM SINE Alu 2 165 -1 1213 189 47 128 chr6 63662420 63662486 -125617068 + MLT1A2 LTR MaLR 304 374 0 605 251 24 18 chr6 63663113 63663280 -125616274 - MLT1H LTR MaLR -361 188 21 238 326 113 21 chr6 63663965 63664106 -125615448 + MIR SINE MIR 43 196 -66 757 147 0 0 chr6 63664120 63664236 -125615318 + FLAM_C SINE Alu 1 116 -27 32 26 0 0 chr6 63664236 63664275 -125615279 + AT_rich Low_complexity Low_complexity 1 39 0 660 212 7 27 chr6 63666256 63666402 -125613152 - MIR SINE MIR -21 241 99 694 178 89 20 chr6 63667167 63667313 -125612241 - MER21B LTR ERV1 -381 482 327 1985 155 0 0 chr6 63667484 63667774 -125611780 - AluSx SINE Alu -22 290 1 1063 193 80 12 chr6 63668050 63668299 -125611255 + L1MD3 LINE L1 7730 7995 0 270 264 168 8 chr6 63668361 63668486 -125611068 - L2 LINE L2 -5 3308 3164 856 162 115 31 chr6 63668912 63669103 -125610451 - MER20 DNA MER1_type 0 219 13 191 378 27 9 chr6 63671126 63671237 -125608317 + MIR SINE MIR 28 140 -68 207 161 0 0 chr6 63671249 63671280 -125608274 + (TG)n Simple_repeat Simple_repeat 2 32 0 342 160 57 0 chr6 63672111 63672195 -125607359 + MIR SINE MIR 52 140 -68 213 372 12 0 chr6 63672491 63672577 -125606977 - L2 LINE L2 0 3272 3186 426 259 196 14 chr6 63673210 63673430 -125606124 + L1ME4a LINE L1 5785 6044 -77 2044 141 37 3 chr6 63673536 63673862 -125605692 - MER1B DNA MER1_type 0 337 1 422 158 142 31 chr6 63673972 63674099 -125605455 + L1MC3 LINE L1 6020 6160 -1625 1434 191 9 41 chr6 63674417 63674712 -125604842 + AluJo SINE Alu 1 287 -25 351 0 0 0 chr6 63674712 63674751 -125604803 + (GA)n Simple_repeat Simple_repeat 2 40 0 1434 191 9 41 chr6 63674751 63674774 -125604780 + AluJo SINE Alu 287 309 -3 492 346 66 4 chr6 63676372 63676600 -125602954 - MIR SINE MIR -1 261 20 4278 161 25 26 chr6 63677589 63678436 -125601118 + L1MA8 LINE L1 5446 6291 0 986 265 51 71 chr6 63678558 63678951 -125600603 + L2 LINE L2 2367 2751 -563 21 0 0 0 chr6 63679346 63679367 -125600187 + AT_rich Low_complexity Low_complexity 1 21 0 633 214 75 6 chr6 63679500 63679659 -125599895 + L1MD3 LINE L1 7802 7971 -24 699 261 47 14 chr6 63679805 63680016 -125599538 + MIR SINE MIR 21 238 -24 372 346 207 12 chr6 63680231 63680647 -125598907 + L2 LINE L2 2289 2785 -529 1821 19 0 0 chr6 63680647 63680862 -125598692 - L1PA2 LINE L1 0 6155 5941 3938 15 0 0 chr6 63680873 63681327 -125598227 + L1P1 LINE L1 5254 5707 -448 212 292 28 14 chr6 63681528 63681600 -125597954 + L2 LINE L2 3191 3263 -9 243 180 0 20 chr6 63682489 63682539 -125597015 - MER5A DNA MER1_type -42 147 99 198 118 0 0 chr6 63682739 63682773 -125596781 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 184 321 57 19 chr6 63682784 63682837 -125596717 - L2 LINE L2 -25 3247 3193 185 128 0 26 chr6 63682882 63682921 -125596633 + (CA)n Simple_repeat Simple_repeat 1 38 0 526 271 42 0 chr6 63683598 63683764 -125595790 - LTR50 LTR ERVL -99 696 524 391 230 28 22 chr6 63684413 63684591 -125594963 + (TA)n Simple_repeat Simple_repeat 2 180 0 288 198 45 10 chr6 63684629 63684925 -125594629 + (TA)n Simple_repeat Simple_repeat 1 306 0 247 304 49 20 chr6 63685055 63685157 -125594397 + MLT1K LTR MaLR 447 551 -37 294 247 0 0 chr6 63685271 63685344 -125594210 - L1P3 LINE L1 -4838 1623 1551 * 546 136 0 0 chr6 63685342 63685430 -125594124 + L1P1 LINE L1 5686 5773 -382 658 290 200 32 chr6 63685575 63686599 -125592955 + L2 LINE L2 2053 3313 0 258 298 32 73 chr6 63686597 63686721 -125592833 + L2 LINE L2 2942 3060 -212 * 403 303 87 10 chr6 63687180 63687388 -125592166 - L1MC/D LINE L1 -2331 5477 5254 336 23 0 0 chr6 63687436 63687479 -125592075 - L1PA3 LINE L1 -3 6152 6110 456 36 0 0 chr6 63687479 63687535 -125592019 + L1PA4 LINE L1 6008 6063 -92 425 338 98 42 chr6 63687535 63688074 -125591480 - L1MC/D LINE L1 -918 5228 4631 7110 36 6 0 chr6 63688074 63688969 -125590585 - L1PA4 LINE L1 -3 6152 5236 425 338 98 42 chr6 63688969 63689207 -125590347 - L1MC/D LINE L1 -1515 4631 4408 23 0 0 0 chr6 63690732 63690755 -125588799 + AT_rich Low_complexity Low_complexity 1 23 0 277 304 0 0 chr6 63691303 63691418 -125588136 + T-rich Low_complexity Low_complexity 1 115 0 1608 180 54 15 chr6 63691531 63691883 -125587671 + MLT2C1 LTR ERVL 2 480 -40 237 65 0 0 chr6 63691934 63691965 -125587589 + (CA)n Simple_repeat Simple_repeat 2 32 0 1961 138 17 0 chr6 63692074 63692364 -125587190 + AluSx SINE Alu 1 295 -17 311 310 17 69 chr6 63692518 63692692 -125586862 - HAL1b LINE L1 -811 537 373 21 89 0 0 chr6 63694241 63694297 -125585257 + AT_rich Low_complexity Low_complexity 1 56 0 390 149 35 23 chr6 63694315 63694402 -125585152 - Charlie7 DNA MER1_type -2513 99 12 26 30 0 0 chr6 63695782 63695815 -125583739 + AT_rich Low_complexity Low_complexity 1 33 0 390 335 98 15 chr6 63696260 63696463 -125583091 + MIR SINE MIR 30 249 -13 22 35 0 0 chr6 63696506 63696535 -125583019 + AT_rich Low_complexity Low_complexity 1 29 0 386 287 90 80 chr6 63696847 63697012 -125582542 + MLT1I LTR MaLR 15 177 -232 180 111 0 0 chr6 63697012 63697039 -125582515 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 386 287 90 80 chr6 63697039 63697249 -125582305 + MLT1I LTR MaLR 177 394 -15 512 322 16 0 chr6 63697259 63697442 -125582112 - MIR SINE MIR -29 233 48 306 0 0 0 chr6 63698414 63698448 -125581106 + (A)n Simple_repeat Simple_repeat 1 34 0 437 291 110 0 chr6 63699098 63699225 -125580329 - MIR SINE MIR -73 189 49 277 370 70 0 chr6 63699650 63699750 -125579804 + L2 LINE L2 2978 3084 -188 234 293 47 38 chr6 63699766 63699872 -125579682 + L1MC/D LINE L1 5609 5715 -2093 244 321 114 7 chr6 63700015 63700155 -125579399 + L2 LINE L2 2933 3087 -185 468 321 78 17 chr6 63700348 63700769 -125578785 + L1ME4a LINE L1 2384 2830 -3316 402 252 60 32 chr6 63700809 63700840 -125578714 + L1ME4a LINE L1 5173 5202 -960 2144 123 0 7 chr6 63700840 63701149 -125578405 + AluSc SINE Alu 1 307 -2 402 252 60 32 chr6 63701149 63701407 -125578147 + L1ME4a LINE L1 5202 5467 -695 525 261 61 22 chr6 63702250 63702429 -125577125 + MIR SINE MIR 76 260 -2 37 52 0 0 chr6 63702759 63702817 -125576737 + AT_rich Low_complexity Low_complexity 1 58 0 78 12 0 0 chr6 63704079 63704164 -125575390 + AT_rich Low_complexity Low_complexity 1 85 0 314 80 0 20 chr6 63704974 63705024 -125574530 - MADE1 DNA Mariner -1 79 31 299 322 11 11 chr6 63705078 63705165 -125574389 + MIR SINE MIR 59 145 -63 625 310 72 70 chr6 63705451 63705880 -125573674 + L2 LINE L2 2864 3293 -20 615 304 26 31 chr6 63706701 63706928 -125572626 - MIR SINE MIR -5 257 32 443 367 85 14 chr6 63706907 63707272 -125572282 + L2 LINE L2 2414 2804 -510 * 310 288 0 0 chr6 63707510 63707583 -125571971 + L2 LINE L2 3200 3272 0 2223 111 7 0 chr6 63707813 63708111 -125571443 + AluSq SINE Alu 1 300 -13 308 319 122 56 chr6 63708617 63709028 -125570526 + L3 LINE CR1 575 1012 -565 730 290 109 64 chr6 63709051 63709548 -125570006 + LTR33 LTR ERVL 1 519 -2 656 261 138 14 chr6 63709548 63709766 -125569788 - MIR SINE MIR -10 252 8 780 261 75 55 chr6 63709874 63710369 -125569185 + L1ME4a LINE L1 5511 6015 -106 592 322 88 24 chr6 63710556 63710851 -125568703 + L3 LINE CR1 1261 1574 -3 676 228 68 76 chr6 63712454 63712691 -125566863 + MIR SINE MIR 4 238 -24 804 249 92 14 chr6 63713238 63713455 -125566099 + MLT1J2 LTR MaLR 1 234 -216 190 43 0 0 chr6 63713455 63713478 -125566076 + MER5A DNA MER1_type 1 23 -166 4962 95 0 13 chr6 63714082 63714787 -125564767 - L1PA11 LINE L1 -3 6171 5476 1144 74 117 0 chr6 63714787 63714949 -125564605 - AluY SINE Alu -16 295 115 20262 164 18 12 chr6 63714949 63717552 -125562002 - L1PA11 LINE L1 -690 5471 2887 1793 155 20 14 chr6 63717552 63717848 -125561706 - AluSx SINE Alu -14 298 1 20262 164 18 12 chr6 63717848 63718831 -125560723 - L1PA11 LINE L1 -3274 2887 1862 2113 148 3 0 chr6 63718831 63719141 -125560413 + AluSx SINE Alu 1 311 -1 20262 164 18 12 chr6 63719141 63719479 -125560075 - L1PA11 LINE L1 -4299 1862 1528 192 369 12 36 chr6 63719801 63719885 -125559669 + L2 LINE L2 3208 3289 -24 216 204 23 0 chr6 63719890 63719934 -125559620 + (CA)n Simple_repeat Simple_repeat 2 46 0 180 111 0 0 chr6 63720051 63720078 -125559476 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 252 0 0 0 chr6 63722389 63722417 -125557137 + (GA)n Simple_repeat Simple_repeat 1 28 0 236 337 109 10 chr6 63724341 63724442 -125555112 - L2 LINE L2 0 3313 3203 2225 95 0 3 chr6 63724448 63724732 -125554822 - AluSq SINE Alu -20 293 11 193 311 81 0 chr6 63725122 63725196 -125554358 + MIR SINE MIR 183 262 0 292 358 166 35 chr6 63725196 63725509 -125554045 - L2 LINE L2 -5 3267 2914 4852 128 5 1 chr6 63725535 63726276 -125553278 + L1PA16 LINE L1 5414 6157 -9 257 340 107 30 chr6 63726297 63726559 -125552995 - L2 LINE L2 -410 2904 2623 2038 33 0 4 chr6 63726560 63726804 -125552750 - L1P2 LINE L1 -338 5817 5575 1193 43 0 25 chr6 63726805 63726968 -125552586 + L1PA4 LINE L1 5994 6152 -3 276 337 108 51 chr6 63726968 63727401 -125552153 - L2 LINE L2 -687 2627 2170 192 91 0 0 chr6 63727868 63727880 -125551674 + (TA)n Simple_repeat Simple_repeat 1 12 -21 2148 105 3 35 chr6 63727880 63728194 -125551360 + AluSx SINE Alu 1 304 -8 192 91 0 0 chr6 63728194 63728214 -125551340 + (TA)n Simple_repeat Simple_repeat 11 33 0 345 47 0 0 chr6 63728214 63728257 -125551297 + (TG)n Simple_repeat Simple_repeat 2 44 0 1379 167 103 10 chr6 63728510 63728822 -125550732 + L1MB8 LINE L1 5837 6177 -1 23 54 0 0 chr6 63729159 63729196 -125550358 + AT_rich Low_complexity Low_complexity 1 37 0 445 288 171 37 chr6 63729997 63730909 -125548645 - L1M4 LINE L1 -1198 4948 3915 307 311 88 27 chr6 63731631 63731891 -125547663 - L1M4 LINE L1 -2286 3860 3585 323 320 35 30 chr6 63732027 63732208 -125547346 + L1MC4a LINE L1 5687 5824 -297 452 283 174 28 chr6 63732281 63732493 -125547061 + MIR SINE MIR 7 249 -13 25 75 0 0 chr6 63732493 63732546 -125547008 + AT_rich Low_complexity Low_complexity 1 53 0 21 57 0 0 chr6 63732649 63732684 -125546870 + AT_rich Low_complexity Low_complexity 1 35 0 251 269 20 16 chr6 63732803 63732899 -125546655 + MIR SINE MIR 16 113 -95 5225 145 23 15 chr6 63733076 63733958 -125545596 + MER4D LTR ERV1 15 903 0 264 368 110 25 chr6 63735913 63736239 -125543315 - L2 LINE L2 -1 3271 2918 2540 155 8 2 chr6 63737243 63737642 -125541912 + MER57A LTR ERV1 1 401 -2 227 241 116 36 chr6 63739182 63739294 -125540260 + MIR SINE MIR 26 146 -116 1011 254 140 42 chr6 63739303 63739638 -125539916 + MLT1J LTR MaLR 1 368 -143 26 30 0 0 chr6 63739699 63739732 -125539822 + AT_rich Low_complexity Low_complexity 1 33 0 367 292 80 58 chr6 63740324 63740461 -125539093 + L2 LINE L2 3133 3272 0 529 281 44 91 chr6 63740779 63741170 -125538384 - MLT1G3 LTR MaLR -182 413 14 929 212 85 0 chr6 63741183 63741419 -125538135 + Charlie4a DNA MER1_type 253 508 0 592 219 0 9 chr6 63742030 63742144 -125537410 - MER81 DNA DNA 0 114 2 1938 82 109 0 chr6 63742441 63742721 -125536833 - AluSx SINE Alu 0 308 1 23 33 0 0 chr6 63744920 63744950 -125534604 + AT_rich Low_complexity Low_complexity 1 30 0 189 175 0 0 chr6 63745887 63745927 -125533627 + (CATA)n Simple_repeat Simple_repeat 3 42 0 922 284 50 86 chr6 63745960 63746485 -125533069 + MLT1G1 LTR MaLR 77 582 -13 253 282 118 10 chr6 63748135 63748244 -125531310 - MIR SINE MIR -61 147 31 240 381 71 34 chr6 63748305 63748573 -125530981 + L2 LINE L2 2990 3267 -5 21 57 0 0 chr6 63748784 63748819 -125530735 + AT_rich Low_complexity Low_complexity 1 35 0 691 272 45 40 chr6 63748948 63749172 -125530382 + MIR SINE MIR 20 244 -18 1017 249 42 4 chr6 63750560 63750801 -125528753 + MIR SINE MIR 12 261 -1 412 291 133 15 chr6 63751981 63752393 -125527161 - L1ME4a LINE L1 -46 6075 5615 241 337 68 83 chr6 63752970 63753222 -125526332 - L2 LINE L2 -218 3054 2807 280 317 21 21 chr6 63753321 63753463 -125526091 - L2 LINE L2 -998 2316 2175 446 358 59 3 chr6 63754231 63754519 -125525035 - L2 LINE L2 -1206 2108 1805 375 294 102 28 chr6 63755616 63755793 -125523761 + MIR3 SINE MIR 16 205 -3 218 335 124 19 chr6 63756129 63756290 -125523264 + L2 LINE L2 3118 3295 -18 2191 118 3 10 chr6 63758158 63758472 -125521082 + AluSx SINE Alu 1 312 0 21 0 0 0 chr6 63758903 63758924 -125520630 + AT_rich Low_complexity Low_complexity 1 21 0 806 327 28 0 chr6 63759445 63759699 -125519855 + MIR SINE MIR 1 261 -1 320 245 20 0 chr6 63761739 63761841 -125517713 - MER113 DNA MER1_type? -415 106 3 261 374 55 36 chr6 63761936 63762104 -125517450 + MIR SINE MIR 6 179 -29 305 140 18 0 chr6 63762104 63762161 -125517393 + CT-rich Low_complexity Low_complexity 4 61 0 191 306 42 14 chr6 63764591 63764663 -125514891 + L2 LINE L2 2693 2766 -548 24 0 0 0 chr6 63766302 63766326 -125513228 + AT_rich Low_complexity Low_complexity 1 24 0 217 299 26 26 chr6 63766360 63766477 -125513077 + (CATATA)n Simple_repeat Simple_repeat 2 118 0 1762 197 0 3 chr6 63767683 63767993 -125511561 - AluJb SINE Alu -2 310 2 463 139 0 0 chr6 63767994 63768073 -125511481 - FLAM_A SINE Alu -2 140 62 583 297 87 13 chr6 63768159 63768388 -125511166 - MIR SINE MIR -2 260 15 413 348 19 0 chr6 63768905 63769060 -125510494 - MIR3 SINE MIR 0 208 51 482 248 32 19 chr6 63769168 63769325 -125510229 - MIR SINE MIR -73 189 31 25282 128 11 17 chr6 63769652 63774848 -125504706 - L1PA8A LINE L1 -1 6445 1239 219 88 0 0 chr6 63774848 63774882 -125504672 + (TTG)n Simple_repeat Simple_repeat 3 36 0 25282 128 11 17 chr6 63774882 63776102 -125503452 - L1PA8A LINE L1 -5207 1239 13 597 95 9 38 chr6 63777054 63777159 -125502395 - AluSp/q SINE Alu 0 313 212 322 287 52 0 chr6 63777513 63777628 -125501926 + L2 LINE L2 3192 3312 -1 328 347 21 7 chr6 63778221 63778365 -125501189 + MIR SINE MIR 68 213 -49 318 307 151 47 chr6 63778812 63779024 -125500530 - L3 LINE CR1 -15 1562 1329 230 240 0 0 chr6 63779448 63779498 -125500056 + L2 LINE L2 3263 3312 -1 2434 74 0 0 chr6 63779978 63780277 -125499277 + AluY SINE Alu 1 299 -12 2389 100 0 3 chr6 63781535 63781846 -125497708 - AluSq SINE Alu -3 310 1 286 291 52 60 chr6 63782670 63782804 -125496750 + L3 LINE CR1 1398 1530 -47 746 270 29 0 chr6 63782834 63783038 -125496516 - MER63A DNA MER1_type 0 210 1 388 325 24 0 chr6 63783798 63783924 -125495630 - MIR SINE MIR -85 177 49 23 0 0 0 chr6 63784581 63784604 -125494950 + AT_rich Low_complexity Low_complexity 1 23 0 362 335 88 44 chr6 63785087 63785383 -125494171 - L2 LINE L2 -659 2655 2347 886 135 67 10 chr6 63785387 63785595 -125493959 - MER33 DNA MER1_type -44 280 61 212 175 29 155 chr6 63786642 63786745 -125492809 - MIR3 SINE MIR -5 203 114 * 459 231 0 10 chr6 63786718 63786822 -125492732 - MER5A DNA MER1_type -83 106 4 249 268 42 0 chr6 63786822 63786885 -125492669 - MIR3 SINE MIR -32 176 111 292 308 65 9 chr6 63786994 63787101 -125492453 + MER81 DNA DNA 1 113 -1 29 47 0 0 chr6 63788254 63788297 -125491257 + AT_rich Low_complexity Low_complexity 1 43 0 224 273 64 82 chr6 63788993 63789103 -125490451 - L2 LINE L2 -20 3252 3145 1148 193 14 9 chr6 63789103 63789321 -125490233 + MER20 DNA MER1_type 1 219 0 22 56 0 0 chr6 63789718 63789754 -125489800 + AT_rich Low_complexity Low_complexity 1 36 0 247 218 0 0 chr6 63789761 63789816 -125489738 - Charlie7 DNA MER1_type -2507 105 51 366 388 66 36 chr6 63789849 63790287 -125489267 + L2 LINE L2 2804 3254 -18 353 342 82 33 chr6 63790881 63791065 -125488489 - L2 LINE L2 -1 3271 3079 3316 221 31 21 chr6 63791457 63792430 -125487124 + L1ME1 LINE L1 5191 6334 0 1648 260 103 51 chr6 63792496 63793135 -125486419 + HAL1 LINE L1 797 1508 -999 2111 131 0 0 chr6 63793135 63793433 -125486121 - AluSx SINE Alu -5 307 10 1648 260 103 51 chr6 63793433 63793790 -125485764 + HAL1 LINE L1 1508 1845 -662 500 248 136 20 chr6 63793776 63793974 -125485580 + L1ME3A LINE L1 5511 5731 -439 * 437 251 6 50 chr6 63793984 63794163 -125485391 + L1ME3A LINE L1 5878 6048 -122 22 35 0 0 chr6 63794163 63794192 -125485362 + AT_rich Low_complexity Low_complexity 1 29 0 395 242 8 31 chr6 63794208 63794336 -125485218 + L1ME3A LINE L1 6037 6161 -9 319 345 24 15 chr6 63794662 63794868 -125484686 - L2 LINE L2 -1064 2250 2043 240 269 54 23 chr6 63794982 63795112 -125484442 + MER94 DNA DNA 1 134 0 1087 80 0 0 chr6 63795380 63795517 -125484037 + AluY SINE Alu 1 137 -174 40855 30 21 1 chr6 63795517 63801511 -125478043 + L1HS LINE L1 35 6153 -2 207 0 0 0 chr6 63801513 63801536 -125478018 + (A)n Simple_repeat Simple_repeat 1 23 0 1543 44 0 0 chr6 63801536 63801717 -125477837 + AluY SINE Alu 119 299 -12 252 86 0 0 chr6 63801799 63801834 -125477720 + (T)n Simple_repeat Simple_repeat 1 35 0 344 275 65 0 chr6 63802034 63802172 -125477382 - L1MA9 LINE L1 -109 6203 6057 288 331 84 18 chr6 63802367 63802533 -125477021 + MIR3 SINE MIR 31 207 -1 1042 220 229 3 chr6 63804495 63804818 -125474736 + MSTD LTR MaLR 1 396 0 21 0 0 0 chr6 63804875 63804896 -125474658 + AT_rich Low_complexity Low_complexity 1 21 0 1191 220 6 28 chr6 63804900 63805218 -125474336 - L1M4 LINE L1 -1143 5003 4693 361 374 18 18 chr6 63806177 63806343 -125473211 + MIR3 SINE MIR 43 208 0 213 39 0 0 chr6 63806564 63806590 -125472964 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2873 185 3 44 chr6 63807094 63807747 -125471807 + L1MA10 LINE L1 5709 6334 0 2368 161 21 26 chr6 63808153 63808581 -125470973 + MSTA LTR MaLR 1 426 -2 274 243 87 10 chr6 63809183 63809286 -125470268 + MER102a DNA MER1_type 41 151 -179 333 225 12 0 chr6 63809361 63809441 -125470113 + MER102a DNA MER1_type 248 328 -2 508 181 285 0 chr6 63810165 63810309 -125469245 + MER53 DNA DNA 1 185 -4 548 248 54 20 chr6 63810841 63810990 -125468564 - MIR SINE MIR -70 192 39 210 37 0 0 chr6 63811995 63812022 -125467532 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2387 80 3 0 chr6 63812024 63812312 -125467242 - AluSp SINE Alu -24 289 1 333 0 0 0 chr6 63812446 63812483 -125467071 + (CA)n Simple_repeat Simple_repeat 2 38 0 805 218 60 56 chr6 63813089 63813305 -125466249 + MER20 DNA MER1_type 3 219 0 184 176 176 94 chr6 63813988 63814073 -125465481 + L2 LINE L2 3173 3264 -8 563 222 42 37 chr6 63815492 63815681 -125463873 + L1MD3 LINE L1 7798 7987 -8 201 175 0 0 chr6 63815751 63815791 -125463763 + (CA)n Simple_repeat Simple_repeat 2 41 0 538 232 0 0 chr6 63815905 63816004 -125463550 + AluJ/FLAM SINE Alu 1 99 -213 40348 38 23 2 chr6 63816390 63822417 -125457137 + L1PA3 LINE L1 4 6155 0 289 194 69 0 chr6 63822960 63823032 -125456522 + L1MD3 LINE L1 7911 7987 -8 1376 104 52 56 chr6 63824038 63824269 -125455285 - MER30 DNA MER1_type 0 230 1 252 0 0 0 chr6 63824566 63824594 -125454960 + (TA)n Simple_repeat Simple_repeat 2 29 0 306 370 84 28 chr6 63826210 63826532 -125453022 - L2 LINE L2 -353 2961 2622 291 355 14 51 chr6 63827730 63827868 -125451686 - L2 LINE L2 -6 3266 3134 194 237 0 92 chr6 63828227 63828303 -125451251 + L3 LINE CR1 1264 1332 -245 460 61 15 0 chr6 63828325 63828391 -125451163 + L1PA10 LINE L1 6097 6163 -5 262 265 0 29 chr6 63829614 63829682 -125449872 - MIR SINE MIR -161 101 36 329 316 75 23 chr6 63829707 63829881 -125449673 + MER5A DNA MER1_type 4 186 -3 306 267 123 70 chr6 63831582 63831882 -125447672 + L2 LINE L2 2156 2471 -843 381 367 40 20 chr6 63833548 63833796 -125445758 + MIR SINE MIR 3 255 -7 21 36 0 0 chr6 63834696 63834724 -125444830 + AT_rich Low_complexity Low_complexity 1 28 0 280 344 107 8 chr6 63836142 63836264 -125443290 + L2 LINE L2 3179 3312 -1 316 136 15 15 chr6 63837896 63837962 -125441592 + GA-rich Low_complexity Low_complexity 1 66 0 380 326 76 57 chr6 63838096 63838412 -125441142 - L2 LINE L2 -15 3257 2936 18092 59 6 1 chr6 63838932 63842006 -125437548 - L1PA7 LINE L1 -1 6153 3002 11265 117 13 17 chr6 63842021 63843806 -125435748 - L1PA7 LINE L1 -4357 1789 11 298 193 36 48 chr6 63843815 63843898 -125435656 - MLT1D LTR MaLR -418 87 6 309 305 84 19 chr6 63843901 63843995 -125435559 + L1 LINE L1 4903 5012 -1134 966 228 13 31 chr6 63843995 63844219 -125435335 - MER58A DNA MER1_type -1 223 4 309 305 84 19 chr6 63844219 63844278 -125435276 + L1 LINE L1 5012 5066 -1080 339 246 8 63 chr6 63844663 63844789 -125434765 + MIR SINE MIR 98 216 -46 859 341 49 22 chr6 63845063 63845509 -125434045 - L2 LINE L2 -420 2894 2437 691 300 47 9 chr6 63845601 63845834 -125433720 - MIR SINE MIR -1 261 20 1064 226 80 51 chr6 63846094 63846172 -125433382 + MLT2B1 LTR ERVL 1 75 -479 357 24 0 0 chr6 63846172 63846214 -125433340 + (TG)n Simple_repeat Simple_repeat 2 43 0 1064 226 80 51 chr6 63846214 63846506 -125433048 + MLT2B1 LTR ERVL 75 431 -123 354 171 0 0 chr6 63846506 63846576 -125432978 + CT-rich Low_complexity Low_complexity 1 70 0 490 259 37 82 chr6 63846636 63846879 -125432675 - L2 LINE L2 0 3313 3082 807 241 26 56 chr6 63846936 63847202 -125432352 + MLT1K LTR MaLR 330 587 -1 222 259 0 0 chr6 63851106 63851160 -125428394 + (TG)n Simple_repeat Simple_repeat 1 54 0 339 156 5 94 chr6 63852545 63852737 -125426817 + GA-rich Low_complexity Low_complexity 6 180 0 201 269 58 0 chr6 63853499 63853551 -125426003 + L2 LINE L2 3204 3258 -14 795 302 39 15 chr6 63854238 63854576 -125424978 - MLT1I LTR MaLR 0 409 64 232 243 73 44 chr6 63855817 63855953 -125423601 + LTR67 LTR ERVL 418 557 0 32 43 0 0 chr6 63856032 63856078 -125423476 + AT_rich Low_complexity Low_complexity 1 46 0 872 262 72 112 chr6 63856236 63856912 -125422642 + L2 LINE L2 2658 3313 0 5454 135 41 11 chr6 63857314 63858186 -125421368 + MER4D LTR ERV1 1 898 -5 286 333 16 8 chr6 63858442 63858571 -125420983 + MIR SINE MIR 121 250 -12 1462 176 62 62 chr6 63858623 63858974 -125420580 + LTR8A LTR ERV1 1 351 -376 3047 85 25 22 chr6 63858974 63859421 -125420133 + LTR7 LTR ERV1 1 448 -2 15734 103 16 38 chr6 63859424 63861970 -125417584 + HERVH LTR ERV1 1 2615 -5098 2975 9 0 0 chr6 63861970 63862288 -125417266 - AluYb8 SINE Alu 0 318 1 15734 103 16 38 chr6 63862288 63862661 -125416893 + HERVH LTR ERV1 2615 2995 -4718 5656 110 13 3 chr6 63862640 63863486 -125416068 + HERVH LTR ERV1 3140 3993 -3720 * 3173 122 0 4 chr6 63863488 63864104 -125415450 + HERVH LTR ERV1 4488 5149 -2564 1466 112 0 0 chr6 63864135 63864340 -125415214 + HERVH LTR ERV1 5615 5819 -1894 2360 104 50 13 chr6 63864340 63864716 -125414838 + HERVH LTR ERV1 7324 7713 0 3243 74 29 20 chr6 63864716 63865160 -125414394 + LTR7 LTR ERV1 1 448 -2 1592 188 43 74 chr6 63865160 63865554 -125414000 + LTR8A LTR ERV1 346 727 0 209 319 62 9 chr6 63866006 63866119 -125413435 + MIR3 SINE MIR 14 132 -76 202 313 148 8 chr6 63866388 63866516 -125413038 - MIR SINE MIR -6 256 111 669 290 74 7 chr6 63867744 63868013 -125411541 + L2 LINE L2 1766 2052 -1262 1967 265 80 45 chr6 63868316 63869222 -125410332 + L2 LINE L2 2040 2976 -338 598 292 31 5 chr6 63869204 63869399 -125410155 + L2 LINE L2 3108 3307 -6 * 281 257 9 105 chr6 63869988 63870093 -125409461 + L3b LINE CR1 1394 1488 -95 180 0 0 0 chr6 63870954 63870974 -125408580 + (TA)n Simple_repeat Simple_repeat 2 21 0 850 222 94 0 chr6 63871237 63871408 -125408146 - MER5A DNA MER1_type -1 188 2 367 328 45 23 chr6 63872544 63872721 -125406833 - L2 LINE L2 -470 2844 2664 276 342 43 8 chr6 63873134 63873251 -125406303 - L2 LINE L2 -2 3270 3150 24 0 0 0 chr6 63873311 63873335 -125406219 + AT_rich Low_complexity Low_complexity 1 24 0 438 193 0 232 chr6 63874867 63875147 -125404407 - MIR SINE MIR 0 262 48 400 144 13 183 chr6 63875338 63875491 -125404063 - L1MA9 LINE L1 -38 6274 6148 23 0 0 0 chr6 63875756 63875779 -125403775 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 63875922 63875947 -125403607 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 63876014 63876036 -125403518 + AT_rich Low_complexity Low_complexity 1 22 0 314 280 10 20 chr6 63876938 63877038 -125402516 + (TATATG)n Simple_repeat Simple_repeat 3 101 0 234 0 0 0 chr6 63877039 63877065 -125402489 + (TG)n Simple_repeat Simple_repeat 2 27 0 1159 271 199 14 chr6 63877193 63877723 -125401831 - L2 LINE L2 -7 3306 2695 709 306 45 64 chr6 63877763 63878231 -125401323 - MLT1J LTR MaLR -34 477 19 681 266 78 5 chr6 63878233 63878451 -125401103 - L2 LINE L2 -684 2630 2397 318 26 0 0 chr6 63879548 63879587 -125399967 + (CA)n Simple_repeat Simple_repeat 2 40 0 273 306 32 40 chr6 63879982 63880116 -125399438 - MIR SINE MIR -63 145 36 390 132 0 0 chr6 63880778 63880854 -125398700 + (TTGG)n Simple_repeat Simple_repeat 2 77 0 25 0 0 0 chr6 63880918 63880943 -125398611 + AT_rich Low_complexity Low_complexity 1 25 0 201 246 105 0 chr6 63882541 63882598 -125396956 - MIR3 SINE MIR -15 193 131 182 388 15 15 chr6 63882620 63882754 -125396800 + MER5B DNA MER1_type 42 175 -3 225 281 10 62 chr6 63883272 63883368 -125396186 - MIR SINE MIR -88 174 84 652 296 153 12 chr6 63883401 63883742 -125395812 + L2 LINE L2 2919 3307 -6 474 279 128 10 chr6 63885177 63885381 -125394173 + L2 LINE L2 3086 3313 0 205 362 29 9 chr6 63885778 63885883 -125393671 - L3 LINE CR1 -601 976 870 394 258 55 39 chr6 63886196 63886324 -125393230 - L3 LINE CR1 -1167 410 281 1984 119 26 25 chr6 63886811 63887156 -125392398 - MER4A LTR ERV1 0 664 261 632 120 0 20 chr6 63887156 63887256 -125392298 - MER4A LTR ERV1 -566 98 1 383 249 315 10 chr6 63887415 63887612 -125391942 - L2 LINE L2 -9 3304 3048 414 0 0 0 chr6 63887619 63887665 -125391889 + (GATTG)n Simple_repeat Simple_repeat 5 50 0 677 194 294 0 chr6 63887915 63888085 -125391469 + MER58A DNA MER1_type 3 222 -2 336 48 0 0 chr6 63888372 63888414 -125391140 + (TG)n Simple_repeat Simple_repeat 1 42 0 239 240 0 0 chr6 63888415 63888465 -125391089 + (CA)n Simple_repeat Simple_repeat 1 50 0 1989 202 121 70 chr6 63889607 63890137 -125389417 + MLT1E1 LTR MaLR 7 563 -91 5309 156 33 43 chr6 63890144 63891899 -125387655 - L1PB4 LINE L1 0 6156 4403 577 168 20 0 chr6 63891909 63892010 -125387544 + MLT1E1 LTR MaLR 520 622 -2 1725 161 3 11 chr6 63892409 63892767 -125386787 - AluJb SINE Alu 0 356 1 208 211 0 0 chr6 63893343 63893381 -125386173 - L2 LINE L2 -16 3256 3219 204 40 0 0 chr6 63894936 63894961 -125384593 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2503 71 3 7 chr6 63895289 63895597 -125383957 + L1PB1 LINE L1 5844 6150 -1 1051 159 34 0 chr6 63895610 63895786 -125383768 + MLT1B LTR MaLR 164 345 -45 38 22 0 0 chr6 63895793 63895838 -125383716 + AT_rich Low_complexity Low_complexity 1 45 0 4336 165 44 56 chr6 63895938 63896405 -125383149 + L1MB3 LINE L1 5048 5519 -664 1661 160 10 42 chr6 63896405 63896717 -125382837 + 7SLRNA srpRNA srpRNA 19 320 0 4336 165 44 56 chr6 63896717 63897388 -125382166 + L1MB3 LINE L1 5519 6176 -7 2368 94 10 3 chr6 63897401 63897708 -125381846 + AluSc SINE Alu 1 309 0 434 223 116 0 chr6 63897850 63897962 -125381592 - MIR3 SINE MIR -24 184 60 202 310 112 74 chr6 63899451 63899844 -125379710 + L2 LINE L2 2092 2499 -815 402 276 95 0 chr6 63900030 63900146 -125379408 + L2 LINE L2 3187 3313 0 195 100 0 0 chr6 63900277 63900307 -125379247 + (TC)n Simple_repeat Simple_repeat 1 30 0 227 373 55 9 chr6 63900748 63900858 -125378696 + L2 LINE L2 3139 3253 -19 341 247 186 0 chr6 63901239 63901336 -125378218 - L2 LINE L2 -4 3268 3154 1422 182 39 31 chr6 63902060 63902988 -125376566 - SVA Other Other -728 722 432 454 129 0 0 chr6 63903261 63903323 -125376231 - L1PA12 LINE L1 -6019 1562 1501 * 1379 162 0 0 chr6 63903321 63903543 -125376011 - L1PA12 LINE L1 -7350 231 10 3005 173 45 10 chr6 63903543 63904121 -125375433 + L1PA16 LINE L1 5562 6159 -7 2415 205 4 0 chr6 63904520 63905012 -125374542 - L1 LINE L1 -1625 4521 4028 21 36 0 0 chr6 63905232 63905260 -125374294 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr6 63905403 63905450 -125374104 + AT_rich Low_complexity Low_complexity 1 47 0 637 167 0 28 chr6 63905804 63905912 -125373642 + AluSg/x SINE Alu 191 295 -15 2880 233 51 6 chr6 63905912 63906690 -125372864 + L1M4 LINE L1 4492 5304 -842 976 171 11 11 chr6 63908630 63908806 -125370748 + FAM SINE Alu 1 48 -1 6870 184 17 11 chr6 63909960 63911489 -125368065 + L1P LINE L1 2658 4196 -1950 4649 83 62 59 chr6 63911663 63912459 -125367095 + SVA Other Other 69 866 -520 7547 82 13 2 chr6 63913002 63914138 -125365416 - L1P LINE L1 -3160 2986 1838 1841 158 17 0 chr6 63915183 63915475 -125364079 - AluJb SINE Alu -15 297 1 198 290 0 70 chr6 63915750 63915850 -125363704 - MIR SINE MIR -51 211 119 194 337 114 59 chr6 63916005 63916260 -125363294 - L2 LINE L2 -5 3267 2999 23 0 0 0 chr6 63916841 63916864 -125362690 + AT_rich Low_complexity Low_complexity 1 23 0 2233 100 0 0 chr6 63919087 63919376 -125360178 + AluSx SINE Alu 1 289 -23 362 127 0 0 chr6 63919442 63919505 -125360049 - L1MA4 LINE L1 -1 6299 6237 548 329 36 24 chr6 63920963 63921212 -125358342 - MIR SINE MIR 0 262 11 501 312 126 9 chr6 63921471 63921686 -125357868 + MIR SINE MIR 12 251 -11 388 252 63 8 chr6 63921809 63921936 -125357618 + L1ME2 LINE L1 6022 6155 -9 29 0 0 0 chr6 63921956 63921985 -125357569 + AT_rich Low_complexity Low_complexity 1 29 0 203 273 129 57 chr6 63922313 63922507 -125357047 - MIR SINE MIR -51 211 4 268 263 0 0 chr6 63923488 63923545 -125356009 + GA-rich Low_complexity Low_complexity 2 58 0 297 255 49 20 chr6 63923727 63923829 -125355725 + MIR SINE MIR 69 173 -89 1794 222 16 36 chr6 63923963 63924521 -125355033 - LTR55 LTR ERV -1 547 1 351 331 97 7 chr6 63924554 63924708 -125354846 - MIR SINE MIR -6 256 89 775 195 204 51 chr6 63924725 63925038 -125354516 + MER57A LTR ERV1 43 403 0 321 278 86 31 chr6 63926091 63926253 -125353301 + MIR SINE MIR 81 251 -11 372 226 118 0 chr6 63926985 63927078 -125352476 + HAL1 LINE L1 1588 1691 -816 35 0 0 0 chr6 63927099 63927134 -125352420 + AT_rich Low_complexity Low_complexity 1 35 0 257 240 125 29 chr6 63927173 63927277 -125352277 + HAL1 LINE L1 1815 1928 -579 2096 121 20 3 chr6 63927330 63927628 -125351926 + AluSp SINE Alu 1 303 -10 342 311 50 55 chr6 63927652 63927871 -125351683 + HAL1 LINE L1 2047 2264 -243 21 0 0 0 chr6 63927905 63927926 -125351628 + AT_rich Low_complexity Low_complexity 1 21 0 374 314 153 47 chr6 63927954 63928295 -125351259 + L1MC/D LINE L1 5436 5812 -1996 545 291 167 38 chr6 63930313 63930917 -125348637 + L1MC/D LINE L1 4524 5205 -941 1136 251 28 26 chr6 63930934 63931356 -125348198 + L1MC/D LINE L1 5256 5678 -2130 2106 168 10 90 chr6 63931398 63931586 -125347968 + MLT1C LTR MaLR 7 208 -259 2191 103 21 3 chr6 63931586 63931877 -125347677 + AluSg SINE Alu 1 296 -14 2106 168 10 90 chr6 63931877 63932189 -125347365 + MLT1C LTR MaLR 208 467 0 4246 181 26 7 chr6 63932189 63932736 -125346818 + L1MB7 LINE L1 4957 5492 -692 1903 166 137 8 chr6 63932736 63933115 -125346439 + MSTA LTR MaLR 1 428 0 4246 181 26 7 chr6 63933115 63933757 -125345797 + L1MB7 LINE L1 5492 6165 -19 1122 249 97 31 chr6 63933826 63934412 -125345142 + L2 LINE L2 2574 3198 -115 612 229 176 0 chr6 63934766 63934919 -125344635 - MER5A DNA MER1_type -6 183 4 192 77 0 0 chr6 63935065 63935091 -125344463 + (TCTCCC)n Simple_repeat Simple_repeat 1 26 0 227 268 71 0 chr6 63935212 63935268 -125344286 - MER81 DNA DNA 0 114 55 387 211 26 0 chr6 63935272 63935348 -125344206 - MER81 DNA DNA -36 78 1 238 330 10 10 chr6 63939212 63939309 -125340245 + L3b LINE CR1 1260 1356 -227 189 107 0 0 chr6 63940167 63940195 -125339359 + (GGAA)n Simple_repeat Simple_repeat 2 29 0 466 286 108 30 chr6 63941005 63941236 -125338318 + MIR SINE MIR 8 256 -6 303 287 32 0 chr6 63941701 63941795 -125337759 + L1MC5 LINE L1 7813 7909 -52 771 311 21 0 chr6 63942192 63942427 -125337127 + MIR SINE MIR 13 252 -10 189 270 16 32 chr6 63944068 63944131 -125335423 - L3 LINE CR1 0 1577 1516 352 257 108 7 chr6 63944184 63944332 -125335222 + MER103 DNA DNA 3 165 -1 2464 65 0 3 chr6 63944334 63944643 -125334911 - AluY SINE Alu -3 308 1 1795 165 0 20 chr6 63944788 63945091 -125334463 - AluJo SINE Alu -15 297 1 227 374 34 20 chr6 63945681 63945828 -125333726 + L2 LINE L2 2900 3048 -224 2171 104 0 13 chr6 63946217 63946515 -125333039 - AluY SINE Alu -15 296 3 215 139 0 23 chr6 63948852 63948895 -125330659 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 2479 75 0 7 chr6 63951633 63951939 -125327615 - AluY SINE Alu -7 304 1 490 283 217 5 chr6 63952190 63952388 -125327166 - MIR SINE MIR -21 241 2 242 299 30 0 chr6 63952872 63952939 -125326615 + GA-rich Low_complexity Low_complexity 3 71 0 22 0 0 0 chr6 63953406 63953428 -125326126 + AT_rich Low_complexity Low_complexity 1 22 0 186 259 114 60 chr6 63953644 63953810 -125325744 + L2 LINE L2 1741 1915 -1399 1155 259 70 65 chr6 63953951 63955269 -125324285 - L1MEc LINE L1 -1384 4831 302 231 346 147 13 chr6 63955610 63955841 -125323713 + L2 LINE L2 2844 3105 -167 240 339 40 0 chr6 63955931 63956055 -125323499 - MER103 DNA DNA 0 166 38 24 0 0 0 chr6 63956373 63956397 -125323157 + AT_rich Low_complexity Low_complexity 1 24 0 1076 130 26 0 chr6 63956397 63956551 -125323003 - AluSq SINE Alu -27 286 129 2062 139 0 7 chr6 63956554 63956889 -125322665 - AluSx SINE Alu 0 312 1 4729 80 2 0 chr6 63956908 63957543 -125322011 - L1PB1 LINE L1 -1 6150 5515 337 234 13 0 chr6 63957811 63957888 -125321666 - MER94 DNA DNA -52 82 5 301 270 79 48 chr6 63958432 63958558 -125320996 + MIR3 SINE MIR 75 204 -4 818 246 167 0 chr6 63958885 63959100 -125320454 - MIR SINE MIR 0 262 12 210 197 134 15 chr6 63959121 63959227 -125320327 - MIR SINE MIR -56 206 80 242 270 0 32 chr6 63959654 63959717 -125319837 + L2 LINE L2 3210 3270 -2 239 335 53 59 chr6 63959891 63960043 -125319511 + L3b LINE CR1 1416 1566 -17 215 351 18 18 chr6 63961620 63961734 -125317820 - MIR SINE MIR -73 135 22 277 315 217 23 chr6 63961919 63962265 -125317289 - L3 LINE CR1 -325 1252 840 516 357 26 22 chr6 63962280 63962507 -125317047 + MIR SINE MIR 21 248 -14 249 330 100 0 chr6 63962562 63962662 -125316892 - L3 LINE CR1 -737 840 731 509 275 98 21 chr6 63963007 63963200 -125316354 - L3 LINE CR1 -1182 395 188 346 258 32 16 chr6 63963776 63963900 -125315654 + (CATATA)n Simple_repeat Simple_repeat 6 131 0 199 298 0 18 chr6 63963938 63963995 -125315559 - MIR SINE MIR -132 76 21 317 236 76 10 chr6 63964172 63964272 -125315282 + MIR SINE MIR 2 111 -97 430 287 239 6 chr6 63964272 63964713 -125314841 + L2 LINE L2 2760 3313 0 1212 88 9 12 chr6 63964714 63965044 -125314510 + (TGGA)n Simple_repeat Simple_repeat 1 329 0 605 294 55 14 chr6 63965158 63965451 -125314103 - L1ME4a LINE L1 -47 6074 5770 422 295 83 28 chr6 63965459 63965713 -125313841 - L1ME4a LINE L1 -382 5739 5472 2493 79 0 0 chr6 63965760 63966063 -125313491 + AluY SINE Alu 1 303 -8 2213 141 0 0 chr6 63966571 63966883 -125312671 + AluSx SINE Alu 1 312 0 1402 279 89 26 chr6 63968219 63968731 -125310823 - L1ME3 LINE L1 -208 5954 5395 1740 146 29 7 chr6 63968731 63969032 -125310522 - AluSx SINE Alu 0 307 1 1402 279 89 26 chr6 63969032 63969218 -125310336 - L1ME3 LINE L1 -767 5395 5222 183 170 43 43 chr6 63969591 63969638 -125309916 + L2 LINE L2 3222 3268 -4 371 270 56 0 chr6 63969815 63969904 -125309650 + MIR SINE MIR 30 123 -85 464 194 107 29 chr6 63970720 63970823 -125308731 - MER5A DNA MER1_type -78 111 1 287 335 94 31 chr6 63970883 63971107 -125308447 + L3b LINE CR1 1338 1575 -8 200 318 80 0 chr6 63971732 63971820 -125307734 - L2 LINE L2 0 3313 3219 263 172 0 17 chr6 63971947 63972005 -125307549 + CT-rich Low_complexity Low_complexity 2 58 0 376 273 116 57 chr6 63973447 63973816 -125305738 - L1MC4a LINE L1 -61 6060 5657 224 172 43 54 chr6 63976842 63976935 -125302619 + (TTATA)n Simple_repeat Simple_repeat 4 95 0 319 318 21 58 chr6 63978332 63978424 -125301130 + MIR3 SINE MIR 16 99 -109 1107 215 157 71 chr6 63978424 63978889 -125300665 + MLT1D LTR MaLR 1 505 0 319 318 21 58 chr6 63978889 63978985 -125300569 + MIR3 SINE MIR 99 197 -11 2294 150 26 0 chr6 63979720 63980059 -125299495 - MER7A DNA MER2_type 0 346 1 289 253 0 23 chr6 63980059 63980141 -125299413 + (TA)n Simple_repeat Simple_repeat 2 81 0 894 198 40 17 chr6 63980501 63980678 -125298876 + MER5A DNA MER1_type 4 184 -5 215 351 53 23 chr6 63981400 63981531 -125298023 + MIR SINE MIR 20 154 -108 248 305 61 0 chr6 63981661 63981743 -125297811 + L2 LINE L2 3208 3294 -19 329 271 67 2 chr6 63981794 63981932 -125297622 + MIR SINE MIR 60 205 -57 189 107 0 0 chr6 63983281 63983309 -125296245 + (TAA)n Simple_repeat Simple_repeat 1 28 0 396 282 46 15 chr6 63983314 63983445 -125296109 - MIR SINE MIR -11 251 117 317 319 121 24 chr6 63984284 63984450 -125295104 + MIR3 SINE MIR 22 203 -5 221 267 17 17 chr6 63984904 63984964 -125294590 - L2 LINE L2 -76 3196 3137 339 299 55 16 chr6 63985068 63985195 -125294359 + MIR SINE MIR 7 138 -124 1184 160 30 10 chr6 63985261 63985461 -125294093 - MER20 DNA MER1_type 0 219 16 493 298 128 9 chr6 63985735 63985953 -125293601 - MIR SINE MIR 0 262 19 288 200 50 25 chr6 63986468 63986548 -125293006 + MIR SINE MIR 57 138 -124 463 120 13 27 chr6 63986611 63986686 -125292868 - MER20 DNA MER1_type 0 219 146 2218 107 0 0 chr6 63987950 63988240 -125291314 - AluSc SINE Alu -19 290 1 183 303 81 61 chr6 63988266 63988365 -125291189 + L2 LINE L2 3099 3199 -73 315 0 0 0 chr6 63989297 63989332 -125290222 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 2016 129 61 3 chr6 63989775 63990070 -125289484 - AluJb SINE Alu 0 312 1 230 204 0 0 chr6 63990104 63990153 -125289401 - LTR66 LTR ERVL -164 446 398 257 73 0 24 chr6 63990157 63990198 -125289356 + (CATA)n Simple_repeat Simple_repeat 4 43 0 655 127 18 9 chr6 63990946 63991056 -125288498 - MER114 LTR ERV -537 111 1 28 29 0 0 chr6 63991111 63991146 -125288408 + AT_rich Low_complexity Low_complexity 1 35 0 35 71 0 0 chr6 63991365 63991435 -125288119 + AT_rich Low_complexity Low_complexity 1 70 0 1375 175 98 21 chr6 63991704 63991990 -125287564 - AluJo SINE Alu -4 308 1 332 298 102 44 chr6 63995064 63995270 -125284284 + MIR SINE MIR 47 262 0 1106 189 18 31 chr6 63995373 63995595 -125283959 - MER20 DNA MER1_type 0 219 1 239 274 0 0 chr6 63996857 63996908 -125282646 + (TG)n Simple_repeat Simple_repeat 2 52 0 231 172 69 46 chr6 63996908 63996948 -125282606 - LTR66 LTR ERVL -171 439 401 417 20 0 0 chr6 63996948 63996998 -125282556 + (GA)n Simple_repeat Simple_repeat 2 51 0 231 172 69 46 chr6 63996998 63997044 -125282510 - LTR66 LTR ERVL -209 401 351 2080 116 0 32 chr6 63998402 63998713 -125280841 + AluSx SINE Alu 10 310 -2 230 328 132 64 chr6 63999200 63999496 -125280058 - L2 LINE L2 -16 3256 2941 387 233 90 15 chr6 64000318 64000451 -125279103 + MIR SINE MIR 86 228 -34 257 314 36 36 chr6 64001479 64001619 -125277935 + MIR SINE MIR 123 262 0 226 44 22 44 chr6 64002367 64002412 -125277142 + (CAAAAA)n Simple_repeat Simple_repeat 1 44 0 235 286 79 43 chr6 64002546 64002686 -125276868 + MIR SINE MIR 118 262 0 925 240 58 21 chr6 64003428 64003670 -125275884 + MIR SINE MIR 8 258 -4 187 159 0 91 chr6 64007088 64007132 -125272422 + L3 LINE CR1 760 799 -778 792 278 57 12 chr6 64007495 64007743 -125271811 + MIR SINE MIR 3 261 -1 255 306 122 0 chr6 64008845 64008943 -125270611 + L2 LINE L2 3199 3308 -5 623 297 69 0 chr6 64011485 64011687 -125267867 + MIR SINE MIR 29 244 -18 192 278 146 46 chr6 64012215 64012366 -125267188 - MIR3 SINE MIR -1 207 42 1484 174 32 6 chr6 64012603 64012919 -125266635 + MER33 DNA MER1_type 1 324 0 359 320 41 25 chr6 64013295 64013417 -125266137 - L2 LINE L2 -8 3264 3141 684 205 113 0 chr6 64015286 64015437 -125264117 - MER5A DNA MER1_type -15 174 7 247 174 0 0 chr6 64017685 64017731 -125261823 - L1MA8 LINE L1 -4 6287 6242 238 169 14 28 chr6 64018969 64019040 -125260514 + (CATATA)n Simple_repeat Simple_repeat 5 74 0 204 40 0 0 chr6 64019044 64019069 -125260485 + (TG)n Simple_repeat Simple_repeat 1 25 0 1929 155 0 0 chr6 64019070 64019348 -125260206 - AluSx SINE Alu -34 278 1 276 250 0 69 chr6 64019528 64019600 -125259954 - L2 LINE L2 -5 3267 3201 189 164 16 33 chr6 64020166 64020227 -125259327 + CT-rich Low_complexity Low_complexity 3 62 0 220 377 0 0 chr6 64021811 64021872 -125257682 - L2 LINE L2 -87 3185 3125 1195 285 97 5 chr6 64022628 64023053 -125256501 + LTR16B LTR ERVL 1 464 0 622 265 66 38 chr6 64023237 64023448 -125256106 + LTR33 LTR ERVL 3 219 -302 557 263 68 34 chr6 64023505 64023710 -125255844 + LTR33 LTR ERVL 304 515 -6 7813 39 16 5 chr6 64023882 64025074 -125254480 - L1PA4 LINE L1 -1 6154 4956 180 313 31 31 chr6 64025095 64025191 -125254363 + L2 LINE L2 2661 2756 -558 1916 168 0 7 chr6 64025239 64025548 -125254006 - AluJb SINE Alu -5 307 1 869 251 96 60 chr6 64025565 64026139 -125253415 - L2 LINE L2 -1 3312 2716 714 309 75 42 chr6 64026135 64026630 -125252924 - L2 LINE L2 -25 3288 2778 * 23 0 0 0 chr6 64026635 64026658 -125252896 + AT_rich Low_complexity Low_complexity 1 23 0 1056 103 0 0 chr6 64026658 64026804 -125252750 - AluY SINE Alu 0 311 166 1504 148 16 68 chr6 64026835 64027145 -125252409 + AluJo SINE Alu 1 294 -18 7149 37 3 0 chr6 64027145 64028263 -125251291 + L1PA4 LINE L1 4977 6096 -59 11853 24 0 0 chr6 64028363 64030002 -125249552 - L1P1 LINE L1 -428 5727 4034 1837 147 3 7 chr6 64030090 64030376 -125249178 + AluSq SINE Alu 6 290 -23 42418 38 0 40 chr6 64030596 64036009 -125243545 - L1P LINE L1 -946 5200 3 1999 151 3 3 chr6 64037153 64037464 -125242090 + AluSx SINE Alu 1 311 -1 482 230 0 0 chr6 64037496 64037583 -125241971 + MER81 DNA DNA 1 87 -27 450 244 17 34 chr6 64038400 64038519 -125241035 + MLT1G LTR MaLR 1 117 -473 1671 170 14 0 chr6 64038519 64038796 -125240758 + AluJb SINE Alu 1 281 -31 390 269 8 37 chr6 64038900 64039034 -125240520 - MIR SINE MIR -71 191 62 252 287 107 41 chr6 64039675 64039797 -125239757 - MIR SINE MIR -56 206 77 1383 213 82 46 chr6 64041152 64041589 -125237965 + LTR16A1 LTR ERVL 1 453 -4 229 289 79 33 chr6 64041965 64042117 -125237437 + MIR SINE MIR 104 262 0 32 26 0 0 chr6 64042796 64042835 -125236719 + AT_rich Low_complexity Low_complexity 1 39 0 1743 183 140 45 chr6 64042840 64043283 -125236271 + MLT1D LTR MaLR 1 485 -20 355 274 85 26 chr6 64044056 64044209 -125235345 - MER103 DNA DNA -3 163 2 538 263 0 0 chr6 64045011 64045129 -125234425 - MIR3 SINE MIR -45 163 46 1332 78 0 0 chr6 64045635 64045801 -125233753 + L1PA4 LINE L1 5987 6152 -3 21 71 0 0 chr6 64045884 64045926 -125233628 + AT_rich Low_complexity Low_complexity 1 42 0 991 287 263 15 chr6 64045977 64046654 -125232900 - L2 LINE L2 -701 2613 1769 182 224 41 0 chr6 64046702 64046751 -125232803 - L2 LINE L2 -1635 1679 1629 319 254 45 36 chr6 64047111 64047221 -125232333 + L2 LINE L2 3160 3270 -2 365 137 49 20 chr6 64047222 64047324 -125232230 + GA-rich Low_complexity Low_complexity 4 108 0 608 228 133 14 chr6 64047352 64047563 -125231991 + L1MA9 LINE L1 6047 6282 -30 232 226 30 45 chr6 64048200 64048333 -125231221 + GA-rich Low_complexity Low_complexity 3 133 0 262 377 0 0 chr6 64048810 64048932 -125230622 + L2 LINE L2 2534 2655 -659 1871 226 62 80 chr6 64048954 64049556 -125229998 + MLT1E LTR MaLR 1 591 -2 342 334 188 22 chr6 64049604 64050242 -125229312 + L2 LINE L2 2006 2749 -565 3657 209 55 63 chr6 64050341 64051553 -125228001 - L1ME1 LINE L1 -5 6230 5027 2257 111 0 7 chr6 64051553 64051851 -125227703 - AluSc SINE Alu -13 296 1 3657 209 55 63 chr6 64051851 64052345 -125227209 - L1ME1 LINE L1 -1208 5027 4531 1984 152 0 0 chr6 64052346 64052629 -125226925 - AluSx SINE Alu -20 292 10 890 218 126 11 chr6 64052663 64052934 -125226620 - L1ME1 LINE L1 -6060 336 35 408 332 33 106 chr6 64052949 64053274 -125226280 + L2 LINE L2 2894 3186 -86 1628 154 0 73 chr6 64053274 64053604 -125225950 - AluJo SINE Alu -1 311 6 408 332 33 106 chr6 64053604 64053676 -125225878 + L2 LINE L2 3186 3262 -10 210 340 0 0 chr6 64053717 64053770 -125225784 + L2 LINE L2 3134 3186 -86 334 246 123 33 chr6 64053837 64054059 -125225495 - L1MC/D LINE L1 -528 5638 5383 278 252 10 78 chr6 64054126 64054229 -125225325 + LTR33 LTR ERVL 10 105 -416 511 268 113 21 chr6 64054258 64054452 -125225102 + LTR33 LTR ERVL 296 507 -14 379 224 22 15 chr6 64054582 64054716 -125224838 - L1MC/D LINE L1 -815 5331 5197 406 270 27 27 chr6 64055064 64055175 -125224379 + L2 LINE L2 3186 3296 -17 258 32 0 0 chr6 64055175 64055206 -125224348 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 584 205 137 0 chr6 64057594 64057711 -125221843 + FLAM_A SINE Alu 1 133 0 1708 272 55 28 chr6 64058216 64058757 -125220797 + Charlie2 DNA MER1_type 35 590 -2272 245 278 8 38 chr6 64059038 64059171 -125220383 + (TTCA)n Simple_repeat Simple_repeat 3 131 0 2063 302 74 19 chr6 64059172 64059305 -125220249 - L2 LINE L2 0 3313 3189 1907 245 88 30 chr6 64059305 64059865 -125219689 - MLT1E LTR MaLR -1 592 1 2063 302 74 19 chr6 64059865 64060708 -125218846 - L2 LINE L2 -124 3189 2259 1358 229 63 15 chr6 64061289 64061686 -125217868 + Charlie2a DNA MER1_type 1459 1874 -988 1243 232 110 38 chr6 64061699 64061974 -125217580 - LTR40c LTR ERVL -5 460 142 207 69 0 0 chr6 64061974 64062003 -125217551 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1243 232 110 38 chr6 64062003 64062154 -125217400 - LTR40c LTR ERVL -323 142 3 * 2023 224 49 8 chr6 64062154 64062683 -125216871 + Charlie2a DNA MER1_type 1864 2414 -448 225 0 0 0 chr6 64062691 64062716 -125216838 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1133 176 10 5 chr6 64062716 64062909 -125216645 - AluJb SINE Alu -32 280 87 1086 243 63 24 chr6 64062942 64063357 -125216197 + Charlie2a DNA MER1_type 2415 2845 -17 21 0 0 0 chr6 64063364 64063385 -125216169 + AT_rich Low_complexity Low_complexity 1 21 0 302 314 59 13 chr6 64063545 64063698 -125215856 - L3b LINE CR1 -206 1377 1218 253 233 33 0 chr6 64063728 64063788 -125215766 + GA-rich Low_complexity Low_complexity 3 64 0 211 294 29 0 chr6 64064276 64064344 -125215210 + MIR3 SINE MIR 98 167 -41 203 238 82 74 chr6 64064497 64064619 -125214935 - MIR SINE MIR -66 196 74 21 0 0 0 chr6 64066518 64066539 -125213015 + AT_rich Low_complexity Low_complexity 1 21 0 360 324 46 113 chr6 64066838 64067255 -125212299 + L2 LINE L2 2872 3260 -12 375 60 0 0 chr6 64067783 64067833 -125211721 + (GGAGA)n Simple_repeat Simple_repeat 2 51 0 25 0 0 0 chr6 64069166 64069191 -125210363 + AT_rich Low_complexity Low_complexity 1 25 0 1108 126 6 0 chr6 64069903 64070070 -125209484 + MER5A DNA MER1_type 1 168 -21 180 240 53 53 chr6 64070968 64071043 -125208511 - MER5A DNA MER1_type -50 139 65 265 296 34 84 chr6 64071102 64071281 -125208273 - MER5B DNA MER1_type -6 172 3 * 287 315 90 51 chr6 64071276 64071454 -125208100 + MIR SINE MIR 3 187 -75 31 110 0 0 chr6 64072730 64072866 -125206688 + AT_rich Low_complexity Low_complexity 1 136 0 395 181 60 0 chr6 64072910 64072993 -125206561 - MIR SINE MIR -91 171 84 258 238 69 30 chr6 64075015 64075116 -125204438 + MIR SINE MIR 107 211 -51 946 176 60 65 chr6 64077496 64077712 -125201842 + MER20 DNA MER1_type 2 216 -3 362 339 39 11 chr6 64078774 64078954 -125200600 - MIR SINE MIR -75 187 3 456 214 20 10 chr6 64079191 64079289 -125200265 - MER5A DNA MER1_type 0 189 91 626 253 31 10 chr6 64079412 64079606 -125199948 + L1ME3A LINE L1 5734 5931 -239 2037 139 7 0 chr6 64079809 64080111 -125199443 + AluSx SINE Alu 1 304 -8 30 83 0 0 chr6 64080158 64080230 -125199324 + AT_rich Low_complexity Low_complexity 1 72 0 247 156 67 0 chr6 64081222 64081267 -125198287 + MIR SINE MIR 119 166 -96 1150 192 17 58 chr6 64081267 64081507 -125198047 + AluJo SINE Alu 3 232 -80 453 276 39 39 chr6 64081728 64081909 -125197645 + MIR SINE MIR 8 188 -74 2325 113 0 3 chr6 64082124 64082434 -125197120 - AluSx SINE Alu -3 309 1 819 220 84 16 chr6 64082706 64082897 -125196657 + MIR SINE MIR 33 236 -26 2364 105 0 0 chr6 64084361 64084665 -125194889 - AluSc SINE Alu -5 304 1 225 264 154 11 chr6 64085349 64085440 -125194114 - HAL1 LINE L1 0 2507 2404 269 303 0 20 chr6 64085810 64085909 -125193645 - L3b LINE CR1 -207 1376 1280 232 105 26 0 chr6 64086136 64086174 -125193380 + MADE1 DNA Mariner 1 39 -41 330 26 0 0 chr6 64086398 64086437 -125193117 + (CA)n Simple_repeat Simple_repeat 1 39 0 1229 225 92 24 chr6 64086438 64086796 -125192758 - MLT2D LTR ERVL -21 533 1 288 0 0 0 chr6 64087933 64087965 -125191589 + (CA)n Simple_repeat Simple_repeat 2 33 0 201 242 65 0 chr6 64089187 64089249 -125190305 - MIR SINE MIR -71 191 126 21 0 0 0 chr6 64089749 64089770 -125189784 + AT_rich Low_complexity Low_complexity 1 21 0 24 77 0 0 chr6 64089893 64089945 -125189609 + AT_rich Low_complexity Low_complexity 1 52 0 1401 297 87 55 chr6 64090013 64091573 -125187981 + L1ME4a LINE L1 3562 5171 -975 291 280 4 0 chr6 64091700 64091817 -125187737 + L1ME4a LINE L1 5353 5469 -718 4888 112 7 16 chr6 64092171 64092879 -125186675 + THE1C-int LTR MaLR 879 1580 0 1823 170 66 38 chr6 64092879 64093244 -125186310 + THE1C LTR MaLR 1 375 0 281 250 53 0 chr6 64093700 64093776 -125185778 - MIR3 SINE MIR -45 163 84 193 357 57 0 chr6 64093812 64093882 -125185672 - MIR3 SINE MIR -125 83 10 916 260 44 8 chr6 64093902 64094152 -125185402 + MIR SINE MIR 4 262 0 1450 185 66 21 chr6 64095020 64095355 -125184199 - MER39 LTR ERV1 -1 706 357 748 178 89 0 chr6 64095526 64095695 -125183859 + Charlie5 DNA MER1_type 2402 2585 -27 204 291 194 30 chr6 64095884 64096049 -125183505 + MIR3 SINE MIR 16 207 -1 266 335 39 56 chr6 64096369 64096548 -125183006 - L2 LINE L2 -1 3271 3096 431 336 13 47 chr6 64096641 64096873 -125182681 + MIR SINE MIR 13 236 -26 1663 173 48 3 chr6 64097314 64097603 -125181951 - AluJo SINE Alu -10 302 1 893 276 125 19 chr6 64097758 64097829 -125181725 + L1ME4a LINE L1 5568 5630 -491 1508 95 20 5 chr6 64097829 64098056 -125181498 - AluSq SINE Alu 0 314 85 893 276 125 19 chr6 64098056 64098461 -125181093 + L1ME4a LINE L1 5630 6097 -24 6398 144 10 9 chr6 64098905 64100237 -125179317 + L1PA16 LINE L1 4836 6166 0 2719 88 44 0 chr6 64100440 64100780 -125178774 - THE1A LTR MaLR 0 355 1 11909 99 15 5 chr6 64100780 64102343 -125177211 - THE1A-int LTR MaLR 0 1580 1 2899 80 11 0 chr6 64102343 64102694 -125176860 - THE1A LTR MaLR 0 355 1 25 0 0 0 chr6 64103172 64103197 -125176357 + AT_rich Low_complexity Low_complexity 1 25 0 1767 140 0 44 chr6 64103611 64103904 -125175650 + AluSx SINE Alu 1 280 -32 1093 40 7 14 chr6 64103906 64104054 -125175500 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 212 320 70 10 chr6 64104600 64104700 -125174854 - MIR SINE MIR -125 137 32 2402 63 0 7 chr6 64107218 64107533 -125172021 + AluSq SINE Alu 1 313 0 555 283 78 26 chr6 64107551 64107742 -125171812 - MIR SINE MIR -43 219 19 238 188 0 21 chr6 64107841 64107889 -125171665 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 216 229 10 52 chr6 64108445 64108541 -125171013 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 313 368 71 6 chr6 64110060 64110242 -125169312 + MIR SINE MIR 3 196 -66 305 335 25 55 chr6 64110501 64110737 -125168817 + L1ME4a LINE L1 5714 5942 -179 520 207 54 0 chr6 64111169 64111280 -125168274 + L2 LINE L2 3194 3310 -3 514 288 164 14 chr6 64111452 64111671 -125167883 - MIR SINE MIR -6 256 5 24 0 0 0 chr6 64113924 64113948 -125165606 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 64113976 64114001 -125165553 + AT_rich Low_complexity Low_complexity 1 25 0 267 276 103 0 chr6 64114458 64114545 -125165009 - MIR3 SINE MIR -41 167 72 217 385 154 0 chr6 64115533 64115624 -125163930 - L2 LINE L2 -25 3247 3143 253 333 74 0 chr6 64115949 64116057 -125163497 - L2 LINE L2 -199 3073 2958 297 229 13 29 chr6 64116617 64116774 -125162780 - LTR33A LTR ERVL -3 520 321 303 259 25 137 chr6 64116788 64116985 -125162569 - LTR33A LTR ERVL -346 177 3 21 36 0 0 chr6 64117545 64117573 -125161981 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 64118604 64118626 -125160928 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 64119046 64119067 -125160487 + AT_rich Low_complexity Low_complexity 1 21 0 201 171 0 0 chr6 64119859 64119894 -125159660 + T-rich Low_complexity Low_complexity 2 36 0 248 375 25 0 chr6 64120423 64120543 -125159011 - L3b LINE CR1 -212 1371 1249 225 132 0 0 chr6 64122724 64122762 -125156792 + (TG)n Simple_repeat Simple_repeat 1 38 0 259 298 75 75 chr6 64122864 64123156 -125156398 + L2 LINE L2 2384 2675 -639 222 343 116 0 chr6 64123688 64123860 -125155694 + L2 LINE L2 2323 2514 -800 327 283 117 30 chr6 64124002 64124165 -125155389 - MLT1J1 LTR MaLR -5 445 260 1059 165 127 34 chr6 64124174 64124465 -125155089 + MER33 DNA MER1_type 1 318 -6 364 234 16 55 chr6 64124528 64124656 -125154898 - MLT1J2 LTR MaLR -325 125 3 205 333 46 52 chr6 64124958 64125132 -125154422 + L2 LINE L2 2690 2862 -452 193 247 65 52 chr6 64125274 64125351 -125154203 + MER5B DNA MER1_type 77 154 -24 * 210 226 20 128 chr6 64125295 64125397 -125154157 - MER5A DNA MER1_type -98 91 1 1999 143 0 0 chr6 64125478 64125764 -125153790 + AluSx SINE Alu 1 286 -26 248 99 112 6 chr6 64125764 64125925 -125153629 + (TA)n Simple_repeat Simple_repeat 1 178 0 206 131 71 0 chr6 64125942 64126041 -125153513 + (TA)n Simple_repeat Simple_repeat 1 106 0 322 366 66 24 chr6 64126192 64126405 -125153149 + HAL1b LINE L1 269 490 -858 256 221 0 15 chr6 64126465 64126533 -125153021 + L1ME3A LINE L1 6091 6157 -13 1689 183 0 185 chr6 64126545 64126601 -125152953 + MLT2B2 LTR ERVL 3 68 -447 2094 130 54 35 chr6 64126601 64126969 -125152585 + THE1C LTR MaLR 1 375 0 1689 183 0 185 chr6 64126969 64127452 -125152102 + MLT2B2 LTR ERVL 68 442 -73 1280 370 0 39 chr6 64128067 64128378 -125151176 + AluY SINE Alu 1 299 -12 1074 143 6 0 chr6 64128402 64128577 -125150977 - AluSg SINE Alu -15 295 120 957 132 26 13 chr6 64128578 64128730 -125150824 - AluSg/x SINE Alu -15 297 144 1439 97 0 5 chr6 64128731 64128917 -125150637 - AluSg SINE Alu -125 185 1 815 91 0 0 chr6 64128917 64129016 -125150538 - AluSg SINE Alu -177 133 35 276 294 138 35 chr6 64129448 64129846 -125149708 + L1ME LINE L1 4100 4538 -1608 1058 180 6 0 chr6 64129878 64130050 -125149504 - FAM SINE Alu -2 173 1 3971 219 71 85 chr6 64130460 64131138 -125148416 + HAL1 LINE L1 201 887 -1620 2108 134 7 0 chr6 64131138 64131444 -125148110 + AluSx SINE Alu 1 308 -4 3971 219 71 85 chr6 64131444 64131458 -125148096 + HAL1 LINE L1 887 900 -1607 4670 176 109 29 chr6 64131458 64132450 -125147104 - MER11C LTR ERVK 0 1071 1 3971 219 71 85 chr6 64132450 64133457 -125146097 + HAL1 LINE L1 900 1877 -630 278 220 77 44 chr6 64133844 64133935 -125145619 - MLT1J2 LTR MaLR -76 374 281 23 54 0 0 chr6 64134260 64134297 -125145257 + AT_rich Low_complexity Low_complexity 1 37 0 681 135 0 0 chr6 64134366 64134455 -125145099 + AluS SINE Alu 2 90 -222 580 176 11 0 chr6 64134454 64134545 -125145009 + AluSc SINE Alu 126 217 -92 * 1203 238 99 37 chr6 64134991 64135373 -125144181 + L2 LINE L2 2908 3313 0 510 300 38 55 chr6 64135426 64135793 -125143761 + L1ME LINE L1 5321 5681 -440 1333 27 0 0 chr6 64135946 64136096 -125143458 - L1PA2 LINE L1 -2 6153 6004 24 53 0 0 chr6 64136096 64136134 -125143420 + AT_rich Low_complexity Low_complexity 1 38 0 953 141 43 12 chr6 64136489 64136652 -125142902 + AluSg/x SINE Alu 132 299 -13 2277 105 10 0 chr6 64137380 64137685 -125141869 + AluSx SINE Alu 5 312 0 755 315 73 75 chr6 64137878 64138845 -125140709 + L2 LINE L2 1615 2579 -735 776 280 57 179 chr6 64139215 64139651 -125139903 + L2 LINE L2 903 1391 -1923 264 83 0 0 chr6 64139651 64139687 -125139867 + LTR41 LTR ERVL 3 38 -735 776 280 57 179 chr6 64139687 64141125 -125138429 + L2 LINE L2 1391 2579 -735 1417 226 80 149 chr6 64141498 64141937 -125137617 + L2 LINE L2 903 1305 -2009 264 83 0 0 chr6 64141937 64141973 -125137581 + LTR41 LTR ERVL 3 38 -735 1417 226 80 149 chr6 64141973 64142263 -125137291 + L2 LINE L2 1305 1614 -1700 186 252 68 107 chr6 64142822 64142925 -125136629 + L2 LINE L2 3170 3268 -4 3887 149 8 73 chr6 64144375 64145114 -125134440 - LTR8 LTR ERV1 0 691 1 342 285 49 32 chr6 64145157 64145280 -125134274 - MIR SINE MIR -120 142 18 212 238 16 0 chr6 64145668 64145731 -125133823 + GA-rich Low_complexity Low_complexity 3 66 0 189 289 133 0 chr6 64145760 64145843 -125133711 + L2 LINE L2 3218 3311 -2 265 325 107 0 chr6 64146192 64146361 -125133193 - MIR SINE MIR -2 260 74 574 265 102 12 chr6 64147649 64147815 -125131739 - MIR SINE MIR -64 198 18 213 312 97 21 chr6 64148236 64148329 -125131225 + MIR3 SINE MIR 85 184 -24 2135 107 17 0 chr6 64148488 64148778 -125130776 - AluSx SINE Alu -17 295 1 955 132 0 0 chr6 64148778 64148914 -125130640 - AluSq/x SINE Alu -176 136 1 841 133 133 0 chr6 64149145 64149295 -125130259 - AluSg/x SINE Alu -13 297 128 1730 129 8 0 chr6 64149395 64149636 -125129918 + AluSx SINE Alu 38 280 -32 324 0 0 0 chr6 64149637 64149673 -125129881 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 229 300 14 0 chr6 64149769 64149839 -125129715 - MIR SINE MIR -16 246 176 2161 113 0 3 chr6 64150280 64150581 -125128973 - AluSx SINE Alu -7 305 6 7825 101 8 8 chr6 64150669 64151833 -125127721 + L1P LINE L1 4034 5197 -949 3179 46 2 4 chr6 64151962 64154217 -125125337 + L1PA3 LINE L1 3612 5916 -239 758 205 10 7 chr6 64154698 64154868 -125124686 + L1ME1 LINE L1 5391 5561 -605 1831 176 153 5 chr6 64154871 64155297 -125124257 + LTR54B LTR ERV1 8 496 -2 590 199 167 6 chr6 64155297 64155453 -125124101 + L1ME1 LINE L1 5558 5738 -428 1154 199 82 37 chr6 64155453 64155845 -125123709 + MSTC LTR MaLR 1 428 0 6094 242 78 36 chr6 64155846 64157511 -125122043 + MSTC-int LTR MaLR 1 1735 0 240 125 75 0 chr6 64157513 64157553 -125122001 + L1MA6 LINE L1 6248 6290 -10 1056 174 103 14 chr6 64157660 64157873 -125121681 + MSTC LTR MaLR 197 428 0 745 209 25 6 chr6 64157873 64158036 -125121518 + L1ME1 LINE L1 5736 5901 -265 21 36 0 0 chr6 64158080 64158108 -125121446 + AT_rich Low_complexity Low_complexity 1 28 0 357 131 0 0 chr6 64159007 64159068 -125120486 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 1421 192 11 45 chr6 64159287 64159574 -125119980 + AluJo SINE Alu 29 305 -7 423 317 102 63 chr6 64161961 64162730 -125116824 + L2 LINE L2 2212 3010 -262 2034 140 3 0 chr6 64162758 64163051 -125116503 - AluSx SINE Alu -18 294 1 1953 177 102 30 chr6 64165097 64165566 -125113988 - MLT1D LTR MaLR -2 503 1 2470 62 0 13 chr6 64165581 64165886 -125113668 - AluY SINE Alu -10 301 1 1515 196 19 32 chr6 64166652 64166963 -125112591 + AluJo SINE Alu 1 307 -5 259 302 142 0 chr6 64167017 64167123 -125112431 - MLT1G3 LTR MaLR -6 549 429 640 229 78 30 chr6 64167141 64167307 -125112247 + MER45A DNA AcHobo 4 177 -1 732 236 52 58 chr6 64167308 64167586 -125111968 - MLT1G3 LTR MaLR -137 412 106 448 269 42 26 chr6 64168044 64168237 -125111317 + MIR SINE MIR 66 261 -1 571 235 29 7 chr6 64169180 64169316 -125110238 - MIR SINE MIR -36 226 88 21 71 0 0 chr6 64169453 64169495 -125110059 + AT_rich Low_complexity Low_complexity 1 42 0 732 248 34 47 chr6 64169795 64170029 -125109525 - MIR SINE MIR -23 239 9 359 294 65 28 chr6 64170648 64170862 -125108692 - MIR SINE MIR 0 262 41 377 270 175 0 chr6 64171652 64171789 -125107765 + MIR3 SINE MIR 27 187 -21 382 350 64 0 chr6 64172031 64172234 -125107320 + L2 LINE L2 2844 3059 -213 1493 163 78 39 chr6 64172329 64172487 -125107067 - AluJo SINE Alu -19 293 118 222 37 0 0 chr6 64172487 64172514 -125107040 + (TG)n Simple_repeat Simple_repeat 2 28 0 1493 163 78 39 chr6 64172514 64172637 -125106917 - AluJo SINE Alu -194 118 1 25 31 0 0 chr6 64173694 64173726 -125105828 + AT_rich Low_complexity Low_complexity 1 32 0 310 270 166 18 chr6 64174298 64174461 -125105093 + MIR SINE MIR 24 210 -52 2380 153 32 5 chr6 64174745 64175145 -125104409 + LTR57 LTR ERVL 1 411 0 249 282 48 39 chr6 64176469 64176572 -125102982 + L2 LINE L2 2950 3053 -219 237 65 0 0 chr6 64176744 64176775 -125102779 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 2438 95 0 0 chr6 64177170 64177474 -125102080 + AluSx SINE Alu 1 304 -8 211 300 14 0 chr6 64177915 64177985 -125101569 + MIR SINE MIR 176 246 -16 288 0 0 0 chr6 64178081 64178113 -125101441 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2117 118 4 0 chr6 64178114 64178393 -125101161 - AluSx SINE Alu -32 280 1 344 313 6 42 chr6 64178671 64178837 -125100717 - MIR SINE MIR -56 206 47 525 265 102 12 chr6 64179944 64180110 -125099444 - MIR SINE MIR -64 198 18 187 312 97 21 chr6 64180531 64180624 -125098930 + MIR3 SINE MIR 85 184 -24 2169 110 14 0 chr6 64180783 64181074 -125098480 - AluSx SINE Alu -17 295 1 1074 96 0 0 chr6 64181074 64181210 -125098344 - AluSq/x SINE Alu -177 136 1 2870 183 18 112 chr6 64182117 64183120 -125096434 - MER21A LTR ERV1 -19 912 70 315 220 0 0 chr6 64183229 64183288 -125096266 - MER21A LTR ERV1 -859 72 14 242 226 94 0 chr6 64185223 64185276 -125094278 - L2 LINE L2 -14 3258 3201 183 310 28 14 chr6 64186350 64186421 -125093133 - L2 LINE L2 -10 3262 3191 1950 134 13 26 chr6 64186938 64187244 -125092310 + AluJb SINE Alu 1 302 -10 962 141 43 12 chr6 64187636 64187799 -125091755 + AluSg/x SINE Alu 130 297 -13 1992 148 3 7 chr6 64188527 64188824 -125090730 + AluJb SINE Alu 5 300 -12 205 254 17 0 chr6 64188932 64188991 -125090563 + CT-rich Low_complexity Low_complexity 1 60 0 1776 159 0 14 chr6 64189501 64189791 -125089763 + AluJo SINE Alu 1 286 -26 189 0 0 0 chr6 64190050 64190071 -125089483 + (GA)n Simple_repeat Simple_repeat 1 21 0 422 155 0 68 chr6 64190180 64190283 -125089271 + MER5A DNA MER1_type 9 104 -85 324 272 10 10 chr6 64191761 64191864 -125087690 + L3 LINE CR1 1467 1569 -8 212 189 0 0 chr6 64191923 64191960 -125087594 + (TG)n Simple_repeat Simple_repeat 1 37 0 283 282 173 6 chr6 64192806 64192962 -125086592 - MIR3 SINE MIR -10 198 17 1531 108 8 58 chr6 64193076 64193317 -125086237 + MER1B DNA MER1_type 104 332 -7 2068 113 7 11 chr6 64193509 64193826 -125085728 - AluSq SINE Alu 0 316 1 1917 136 7 4 chr6 64193882 64194197 -125085357 - AluSx SINE Alu 0 316 1 472 296 103 25 chr6 64194455 64194698 -125084856 + L1ME LINE L1 5480 5741 -380 2357 100 3 0 chr6 64195202 64195501 -125084053 + AluSp SINE Alu 1 300 -13 360 257 93 7 chr6 64195529 64195669 -125083885 + MIR SINE MIR 63 214 -48 1600 156 83 4 chr6 64196124 64196400 -125083154 + AluJo SINE Alu 1 298 -14 1915 114 68 4 chr6 64196864 64197145 -125082409 + AluSx SINE Alu 1 299 -13 1921 156 13 13 chr6 64197374 64197676 -125081878 + AluJb SINE Alu 1 302 -10 282 207 0 0 chr6 64197688 64197746 -125081808 - MIR3 SINE MIR -27 181 124 233 271 186 8 chr6 64198599 64198717 -125080837 - MIR SINE MIR -82 180 42 935 116 0 16 chr6 64199544 64199673 -125079881 - FLAM_C SINE Alu -16 127 1 1947 142 13 19 chr6 64200316 64200627 -125078927 + AluJb SINE Alu 1 309 -3 566 307 117 3 chr6 64202000 64202283 -125077271 + L1MC/D LINE L1 5510 5824 -1984 836 158 8 0 chr6 64202292 64202419 -125077135 + AluJo SINE Alu 7 134 -178 2468 60 7 13 chr6 64204109 64204411 -125075143 - AluY SINE Alu -11 300 1 1925 139 7 0 chr6 64204544 64204831 -125074723 - AluJb SINE Alu -13 299 11 224 300 0 30 chr6 64204879 64204979 -125074575 + CT-rich Low_complexity Low_complexity 1 97 0 406 211 74 0 chr6 64205845 64205940 -125073614 + MER5B DNA MER1_type 77 178 0 187 238 127 0 chr6 64206887 64206950 -125072604 + MER5A DNA MER1_type 97 167 -22 380 237 75 0 chr6 64206950 64207043 -125072511 - MIR3 SINE MIR -54 154 55 2407 93 0 16 chr6 64207061 64207374 -125072180 + AluSg SINE Alu 3 310 0 199 381 0 0 chr6 64207825 64207888 -125071666 + L3 LINE CR1 1306 1368 -209 1419 128 144 0 chr6 64207959 64208202 -125071352 + AluJb SINE Alu 14 291 -21 2244 112 3 6 chr6 64208376 64208690 -125070864 + AluSp SINE Alu 1 313 0 193 378 0 14 chr6 64208748 64208822 -125070732 + L2 LINE L2 2982 3054 -218 183 306 0 0 chr6 64209686 64209735 -125069819 - MIR SINE MIR -108 154 106 1763 165 3 32 chr6 64211413 64211722 -125067832 + AluJb SINE Alu 1 300 -12 852 144 0 0 chr6 64211938 64212079 -125067475 - FLAM_C SINE Alu 0 141 1 322 238 24 56 chr6 64212101 64212227 -125067327 + MER5B DNA MER1_type 4 125 -53 550 228 54 30 chr6 64212311 64212478 -125067076 + MIR SINE MIR 48 218 -44 620 266 84 25 chr6 64212500 64212737 -125066817 + L1MC/D LINE L1 5552 5802 -2006 2479 84 0 3 chr6 64214802 64215113 -125064441 + AluSg SINE Alu 1 310 0 1620 222 163 0 chr6 64216862 64217340 -125062214 + L1ME3A LINE L1 5593 6148 -22 721 260 67 9 chr6 64217385 64217608 -125061946 - MIR SINE MIR -12 250 15 280 285 157 29 chr6 64217762 64217934 -125061620 + MIR3 SINE MIR 5 198 -10 209 252 86 36 chr6 64217934 64218073 -125061481 + L2 LINE L2 3158 3303 -10 1543 193 17 17 chr6 64218409 64218709 -125060845 + AluJo SINE Alu 1 300 -12 636 218 102 7 chr6 64218716 64218885 -125060669 + FAM SINE Alu 1 47 0 21 0 0 0 chr6 64220154 64220175 -125059379 + AT_rich Low_complexity Low_complexity 1 21 0 408 149 181 0 chr6 64220795 64220889 -125058665 + L1MA9 LINE L1 6164 6274 -38 640 190 40 2 chr6 64222730 64222866 -125056688 - L1ME3A LINE L1 0 6170 6028 226 281 52 52 chr6 64223461 64223557 -125055997 + MIR3 SINE MIR 102 197 -11 581 230 56 17 chr6 64224521 64224699 -125054855 + MIR SINE MIR 75 259 -3 2139 123 3 7 chr6 64225035 64225337 -125054217 + AluSq SINE Alu 1 301 -12 432 200 257 0 chr6 64225577 64225682 -125053872 - FLAM_C SINE Alu -1 132 1 2238 89 28 0 chr6 64225686 64225977 -125053577 - AluSg SINE Alu -11 299 1 1166 170 66 60 chr6 64226341 64226528 -125053026 - MER33 DNA MER1_type -2261 324 133 1823 136 32 0 chr6 64226528 64226807 -125052747 - AluJo SINE Alu 0 312 25 1166 170 66 60 chr6 64226807 64226936 -125052618 - MER33 DNA MER1_type -2452 133 6 554 287 79 15 chr6 64226988 64227190 -125052364 - MIR SINE MIR 0 262 48 1936 135 38 0 chr6 64227231 64227520 -125052034 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr6 64227602 64227623 -125051931 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 64227662 64227690 -125051864 + AT_rich Low_complexity Low_complexity 1 28 0 226 293 27 0 chr6 64227957 64228032 -125051522 - L2 LINE L2 -553 2761 2685 2266 98 26 3 chr6 64228085 64228391 -125051163 + AluSq SINE Alu 1 313 0 2062 137 39 39 chr6 64228541 64228905 -125050649 + THE1B LTR MaLR 1 364 0 2488 34 0 14 chr6 64229129 64229424 -125050130 + AluY SINE Alu 2 292 -19 22 0 0 0 chr6 64230433 64230455 -125049099 + AT_rich Low_complexity Low_complexity 1 22 0 343 256 12 0 chr6 64230473 64230559 -125048995 - MIR3 SINE MIR -14 194 108 243 272 87 35 chr6 64230659 64230832 -125048722 + L1MEd LINE L1 903 1084 -5035 2350 59 0 11 chr6 64230968 64231282 -125048272 + AluY SINE Alu 1 311 0 1065 167 5 5 chr6 64231345 64231531 -125048023 + MER3 DNA MER1_type 20 205 -4 27 0 0 0 chr6 64232072 64232099 -125047455 + AT_rich Low_complexity Low_complexity 1 27 0 2430 130 41 66 chr6 64232440 64232497 -125047057 + MSTB LTR MaLR 1 58 -368 2311 120 3 0 chr6 64232497 64232806 -125046748 + AluSx SINE Alu 3 312 0 2430 130 41 66 chr6 64232806 64233185 -125046369 + MSTB LTR MaLR 58 426 0 1123 148 67 0 chr6 64233198 64233408 -125046146 - MER44D DNA MER2_type -28 577 299 268 189 57 82 chr6 64233433 64233555 -125045999 - MER51D LTR ERV1 -28 629 511 * 1870 156 67 58 chr6 64233532 64233935 -125045619 - LTR60 LTR ERV1 -7 579 170 1905 83 56 15 chr6 64233935 64234081 -125045473 - AluSx SINE Alu -16 296 133 1978 76 0 0 chr6 64234081 64234319 -125045235 - AluSc SINE Alu -70 239 2 1905 83 56 15 chr6 64234319 64234438 -125045116 - AluSx SINE Alu -179 133 20 1870 156 67 58 chr6 64234438 64234464 -125045090 - LTR60 LTR ERV1 -416 170 146 732 215 47 0 chr6 64234522 64234671 -125044883 - LTR60 LTR ERV1 -430 156 1 * 1409 189 91 0 chr6 64234671 64234945 -125044609 - MER44D DNA MER2_type -401 304 6 254 183 84 0 chr6 64235013 64235084 -125044470 + GA-rich Low_complexity Low_complexity 6 82 0 270 185 33 87 chr6 64235258 64235350 -125044204 + L2 LINE L2 3186 3272 0 2406 95 3 0 chr6 64235499 64235804 -125043750 - AluSp SINE Alu -6 307 2 2232 105 3 3 chr6 64236193 64236488 -125043066 - AluSq SINE Alu -18 295 1 430 273 30 76 chr6 64237528 64237633 -125041921 + MER67B LTR ERV1 1 94 -567 1578 162 25 101 chr6 64237633 64238028 -125041526 - MLT1A1 LTR MaLR 0 365 1 430 273 30 76 chr6 64238028 64238120 -125041434 + MER67B LTR ERV1 94 189 -472 254 310 0 44 chr6 64238215 64238328 -125041226 + MER67A LTR ERV1 372 479 -64 728 140 0 9 chr6 64238568 64238682 -125040872 - MLT1A1 LTR MaLR -252 113 1 2482 126 62 14 chr6 64238682 64239119 -125040435 - L1MB2 LINE L1 -148 6023 5566 1722 159 0 48 chr6 64239364 64239679 -125039875 + AluJo SINE Alu 1 300 -12 2168 163 68 32 chr6 64240868 64241311 -125038243 - LTR2B LTR ERV1 0 490 32 2215 89 0 61 chr6 64241427 64241753 -125037801 + AluSx SINE Alu 1 306 -6 292 309 61 30 chr6 64242330 64242495 -125037059 + MIR3 SINE MIR 30 199 -9 284 265 0 0 chr6 64242615 64242683 -125036871 - L2 LINE L2 -7 3265 3198 2406 65 14 0 chr6 64243722 64244016 -125035538 + AluSp SINE Alu 1 298 -15 285 338 0 27 chr6 64244367 64244515 -125035039 + C-rich Low_complexity Low_complexity 4 147 0 290 256 26 0 chr6 64244516 64244594 -125034960 - L1MC4 LINE L1 -13 8029 7950 186 43 0 0 chr6 64244777 64244800 -125034754 + (GAA)n Simple_repeat Simple_repeat 2 24 0 446 198 194 77 chr6 64245437 64245499 -125034055 + MER102a DNA MER1_type 70 123 -1294 2384 84 0 0 chr6 64245499 64245795 -125033759 + AluSg SINE Alu 1 296 -14 446 198 194 77 chr6 64245795 64245954 -125033600 + MER102a DNA MER1_type 123 317 -13 526 211 77 96 chr6 64245992 64246156 -125033398 - L2 LINE L2 -119 3194 3035 1880 161 7 3 chr6 64246156 64246448 -125033106 - AluJo SINE Alu -19 293 1 526 211 77 96 chr6 64246448 64246544 -125033010 - L2 LINE L2 -278 3035 2939 2262 106 0 3 chr6 64246618 64246921 -125032633 - AluY SINE Alu -9 302 1 1171 206 14 52 chr6 64247187 64247426 -125032128 + L1MD2 LINE L1 6061 6289 -70 2202 125 0 10 chr6 64247426 64247730 -125031824 - AluSc SINE Alu -8 301 1 1171 206 14 52 chr6 64247730 64247777 -125031777 + L1MD2 LINE L1 6289 6336 -23 25 0 0 0 chr6 64247824 64247849 -125031705 + AT_rich Low_complexity Low_complexity 1 25 0 211 355 43 0 chr6 64247922 64248015 -125031539 - L3 LINE CR1 -1189 388 292 222 393 53 0 chr6 64248056 64248206 -125031348 - L3 LINE CR1 -1353 224 67 433 250 11 76 chr6 64248366 64248550 -125031004 + MIR SINE MIR 35 206 -56 203 315 0 0 chr6 64248630 64248684 -125030870 - L3 LINE CR1 -12 1565 1512 556 235 147 5 chr6 64248799 64249003 -125030551 - MIR SINE MIR -10 252 20 1514 191 15 73 chr6 64249135 64249532 -125030022 + MLT1A2 LTR MaLR 1 374 0 425 183 0 0 chr6 64250184 64250255 -125029299 - LTR54 LTR ERV1 -38 472 402 435 308 78 78 chr6 64250773 64250952 -125028602 + L2 LINE L2 2836 3014 -299 2284 91 0 38 chr6 64250952 64251271 -125028283 + AluSg SINE Alu 3 309 -1 435 308 78 78 chr6 64251271 64251568 -125027986 + L2 LINE L2 3013 3312 -1 2003 116 18 0 chr6 64252046 64252357 -125027197 - AluSx SINE Alu 0 316 1 2283 108 0 0 chr6 64253394 64253691 -125025863 + AluY SINE Alu 1 297 -14 21 0 0 0 chr6 64253877 64253898 -125025656 + AT_rich Low_complexity Low_complexity 1 21 0 1916 140 0 34 chr6 64254026 64254341 -125025213 + AluSx SINE Alu 1 305 0 603 300 15 41 chr6 64255253 64255520 -125024034 - MIR SINE MIR 0 262 3 2311 112 0 13 chr6 64255744 64256058 -125023496 - AluSx SINE Alu -2 310 1 2260 86 3 26 chr6 64256786 64257088 -125022466 - AluSc SINE Alu -14 295 1 236 293 107 13 chr6 64257169 64257244 -125022310 + L2 LINE L2 3138 3219 -53 2672 46 0 0 chr6 64257617 64257920 -125021634 - AluY SINE Alu -8 303 1 473 310 16 27 chr6 64258002 64258189 -125021365 - MIR SINE MIR -71 191 7 1977 140 0 24 chr6 64258201 64258520 -125021034 + AluSx SINE Alu 1 312 0 8308 140 10 6 chr6 64258604 64259879 -125019675 - Tigger1 DNA MER2_type -1112 1306 26 271 228 13 25 chr6 64260026 64260105 -125019449 - HERV16 LTR ERVL -336 4660 4583 584 373 45 8 chr6 64260133 64260433 -125019121 - HERV16 LTR ERVL -750 5014 4696 2159 126 3 0 chr6 64260433 64260734 -125018820 + AluSq SINE Alu 1 302 -11 584 373 45 8 chr6 64260734 64260808 -125018746 - HERV16 LTR ERVL -1068 4696 4626 1642 241 89 59 chr6 64260820 64261520 -125018034 - MER50 LTR ERV1 0 734 14 1276 278 72 3 chr6 64261743 64262103 -125017451 - HERV16 LTR ERVL -3708 1288 904 270 125 21 0 chr6 64262108 64262156 -125017398 - MER51C LTR ERV1 0 640 592 2215 107 7 3 chr6 64262157 64262457 -125017097 - AluSx SINE Alu -11 301 1 3687 102 6 23 chr6 64262460 64262639 -125016915 - MER51C LTR ERV1 -114 526 345 2417 93 0 0 chr6 64262639 64262949 -125016605 + AluSg SINE Alu 1 310 0 3687 102 6 23 chr6 64262949 64263327 -125016227 - MER51C LTR ERV1 -295 345 1 1044 275 64 33 chr6 64263398 64263791 -125015763 - HERV16 LTR ERVL -4501 495 91 2902 91 34 59 chr6 64263794 64264266 -125015288 - MER4C LTR ERV1 0 465 6 437 204 204 15 chr6 64264315 64264447 -125015107 - LTR16A LTR ERVL -174 276 120 1085 79 0 72 chr6 64264472 64264624 -125014930 + AluSg SINE Alu 1 141 -169 1984 188 75 25 chr6 64264624 64265061 -125014493 - LTR2B LTR ERV1 0 490 32 1116 130 12 0 chr6 64265080 64265242 -125014312 + AluSg SINE Alu 139 302 -8 24 32 0 0 chr6 64265668 64265699 -125013855 + AT_rich Low_complexity Low_complexity 1 31 0 2254 109 6 0 chr6 64266203 64266514 -125013040 - AluSp SINE Alu 0 313 1 2186 117 3 3 chr6 64266721 64267021 -125012533 - AluSx SINE Alu -9 303 4 219 171 24 0 chr6 64267170 64267211 -125012343 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 269 355 26 61 chr6 64267371 64267782 -125011772 - L2 LINE L2 -160 3112 2709 2457 82 0 3 chr6 64267957 64268262 -125011292 - AluSp SINE Alu -9 304 1 442 304 72 16 chr6 64269017 64269211 -125010343 + LTR67 LTR ERVL 350 554 -3 228 317 117 0 chr6 64269236 64269466 -125010088 - L2 LINE L2 -1230 2084 1828 2209 89 7 0 chr6 64269489 64269770 -125009784 - AluSg SINE Alu -23 287 5 1859 184 0 3 chr6 64270021 64270388 -125009166 + AluJo SINE Alu 1 366 0 334 155 0 0 chr6 64270330 64270572 -125008982 + GA-rich Low_complexity Low_complexity 1 242 0 650 255 103 19 chr6 64270618 64270857 -125008697 + MIR SINE MIR 3 257 -5 1349 204 125 39 chr6 64271563 64271619 -125007935 - L1MA8 LINE L1 0 6291 6241 2390 89 0 3 chr6 64271619 64271921 -125007633 - AluSg SINE Alu -9 301 1 1349 204 125 39 chr6 64271921 64272305 -125007249 - L1MA8 LINE L1 -50 6241 5813 228 247 62 0 chr6 64273577 64273658 -125005896 - L2 LINE L2 0 3313 3228 405 238 122 30 chr6 64273703 64273867 -125005687 + MIR SINE MIR 79 257 -5 427 183 12 24 chr6 64274134 64274216 -125005338 + MLT1K LTR MaLR 143 223 -365 325 267 20 20 chr6 64274221 64274322 -125005232 + MLT1K LTR MaLR 484 584 -4 432 324 120 64 chr6 64274348 64274809 -125004745 - L2 LINE L2 -2 3270 2778 2182 240 36 67 chr6 64275306 64275832 -125003722 + MLT1E LTR MaLR 1 507 -86 855 153 0 0 chr6 64275832 64275969 -125003585 + L1PB4 LINE L1 6018 6154 -2 2182 240 36 67 chr6 64275969 64276054 -125003500 + MLT1E LTR MaLR 507 593 0 395 314 80 29 chr6 64276073 64276312 -125003242 + MLT1L LTR MaLR 3 253 -362 230 233 110 0 chr6 64276353 64276426 -125003128 + MLT1L LTR MaLR 314 394 -221 297 0 0 0 chr6 64276478 64276511 -125003043 + (TA)n Simple_repeat Simple_repeat 1 33 0 1748 121 0 0 chr6 64276513 64276752 -125002802 - AluSc SINE Alu 0 309 71 2380 102 0 0 chr6 64276752 64277055 -125002499 - AluY SINE Alu -6 305 1 537 158 0 0 chr6 64277057 64277139 -125002415 - AluSc SINE Alu -226 83 2 366 243 19 0 chr6 64277155 64277258 -125002296 + MLT1L LTR MaLR 510 614 -1 273 275 12 0 chr6 64277555 64277635 -125001919 + MLT1K LTR MaLR 492 572 -16 347 124 0 23 chr6 64277936 64278015 -125001539 - Alu SINE Alu -20 282 235 23 0 0 0 chr6 64278109 64278132 -125001422 + AT_rich Low_complexity Low_complexity 1 23 0 2145 92 0 0 chr6 64278135 64278397 -125001157 - AluSx SINE Alu -26 286 25 3148 165 44 47 chr6 64278866 64279238 -125000316 - L1MD2 LINE L1 -13 6346 5975 1889 147 80 6 chr6 64279238 64279551 -125000003 + MER1B DNA MER1_type 2 337 0 3148 165 44 47 chr6 64279551 64279839 -124999715 - L1MD2 LINE L1 -384 5975 5688 307 220 17 0 chr6 64279855 64279914 -124999640 + MER112 DNA MER1_type 180 239 -21 2384 103 0 0 chr6 64279914 64280215 -124999339 - AluSx SINE Alu -11 301 1 183 314 34 51 chr6 64280255 64280373 -124999181 + L2 LINE L2 2857 2972 -300 2414 137 61 12 chr6 64280464 64280834 -124998720 + MSTA LTR MaLR 1 394 -34 2269 116 0 0 chr6 64280834 64281137 -124998417 - AluSx SINE Alu -9 303 1 2414 137 61 12 chr6 64281137 64281174 -124998380 + MSTA LTR MaLR 394 428 0 361 155 48 0 chr6 64281177 64281261 -124998293 + GA-rich Low_complexity Low_complexity 3 90 0 561 193 46 0 chr6 64281309 64281418 -124998136 - MER58 DNA MER1_type 0 2420 2307 364 275 63 58 chr6 64282003 64282210 -124997344 - MLT1J LTR MaLR -165 346 139 * 435 318 91 16 chr6 64282206 64282448 -124997106 - MLT1K LTR MaLR -198 390 131 2027 99 88 14 chr6 64282687 64282970 -124996584 + AluY SINE Alu 1 304 -7 1907 146 13 42 chr6 64283041 64283350 -124996204 + AluJb SINE Alu 1 300 -12 322 283 133 0 chr6 64284299 64284412 -124995142 + MIR3 SINE MIR 58 185 -23 180 0 0 0 chr6 64285095 64285115 -124994439 + (TTG)n Simple_repeat Simple_repeat 2 21 0 225 185 15 62 chr6 64285167 64285232 -124994322 - MLT1K LTR MaLR -342 246 185 1755 169 17 47 chr6 64286012 64286330 -124993224 + L1MB7 LINE L1 5820 6127 -57 1674 185 31 0 chr6 64286330 64286616 -124992938 + AluJo SINE Alu 1 295 -17 1755 169 17 47 chr6 64286616 64286657 -124992897 + L1MB7 LINE L1 6127 6168 -16 1564 135 85 32 chr6 64286718 64286867 -124992687 + AluSq SINE Alu 1 141 -172 2385 90 7 0 chr6 64286867 64287167 -124992387 + AluSp SINE Alu 1 302 -11 1564 135 85 32 chr6 64287167 64287299 -124992255 + AluSq SINE Alu 141 297 -16 2219 123 0 0 chr6 64287310 64287610 -124991944 + AluY SINE Alu 1 300 -11 231 370 19 0 chr6 64287932 64288040 -124991514 - L2 LINE L2 -1 3271 3162 1793 174 27 0 chr6 64288937 64289230 -124990324 + AluJo SINE Alu 1 301 -11 247 222 25 0 chr6 64289242 64289323 -124990231 + GA-rich Low_complexity Low_complexity 2 84 0 251 306 116 16 chr6 64290000 64290121 -124989433 + L2 LINE L2 3180 3312 -1 2146 126 10 0 chr6 64291037 64291330 -124988224 + AluSx SINE Alu 1 296 -16 2286 97 0 3 chr6 64291838 64292136 -124987418 - AluSg SINE Alu -13 297 1 259 262 115 16 chr6 64292442 64292564 -124986990 - L2 LINE L2 -1 3312 3179 2117 148 3 0 chr6 64293409 64293720 -124985834 + AluSx SINE Alu 1 312 0 22 0 0 30 chr6 64294103 64294116 -124985438 + AT_rich Low_complexity Low_complexity 1 13 -19 2724 127 35 61 chr6 64294116 64294481 -124985073 + L1MA4 LINE L1 5798 6148 -152 1960 143 0 19 chr6 64294481 64294788 -124984766 + AluJb SINE Alu 11 311 -1 2724 127 35 61 chr6 64294788 64294933 -124984621 + L1MA4 LINE L1 6148 6295 -5 22 0 0 30 chr6 64294933 64294952 -124984602 + AT_rich Low_complexity Low_complexity 13 32 0 2356 78 0 7 chr6 64295587 64295883 -124983671 + AluSq SINE Alu 1 294 -19 214 277 0 0 chr6 64295943 64296008 -124983546 - MIR SINE MIR -100 162 98 1381 125 191 27 chr6 64296008 64296264 -124983290 + AluSg SINE Alu 1 298 -2 1249 144 0 0 chr6 64297971 64298145 -124981409 - AluJo SINE Alu -138 174 1 189 0 0 0 chr6 64300010 64300031 -124979523 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 180 0 0 0 chr6 64300219 64300239 -124979315 + (T)n Simple_repeat Simple_repeat 1 20 0 721 243 21 21 chr6 64300601 64300790 -124978764 - MARNA DNA Mariner -48 538 350 459 258 0 0 chr6 64300964 64301061 -124978493 - Tigger2 DNA MER2_type 0 2718 2622 293 283 22 0 chr6 64301053 64301145 -124978409 + MARNA DNA Mariner 482 575 -11 * 573 265 44 17 chr6 64301515 64301696 -124977858 + MIR SINE MIR 77 262 0 271 136 23 0 chr6 64301912 64301956 -124977598 - LTR24C LTR ERV1 -79 556 512 27 0 0 0 chr6 64302286 64302313 -124977241 + AT_rich Low_complexity Low_complexity 1 27 0 2129 97 31 17 chr6 64302890 64303179 -124976375 - AluSg SINE Alu -17 293 1 1144 145 29 48 chr6 64303209 64303416 -124976138 + MER20 DNA MER1_type 16 218 -1 263 330 10 21 chr6 64303416 64303513 -124976041 + MIR SINE MIR 15 110 -152 1307 133 0 6 chr6 64304082 64304262 -124975292 + AluJo SINE Alu 1 179 -133 395 281 23 8 chr6 64304433 64304561 -124974993 + MER5B DNA MER1_type 3 132 -46 1251 102 48 29 chr6 64304923 64305129 -124974425 + THE1C LTR MaLR 1 210 -165 212 294 55 55 chr6 64306902 64307011 -124972543 + L2 LINE L2 3104 3212 -101 562 256 108 40 chr6 64307083 64307333 -124972221 - L2 LINE L2 -2 3311 3045 410 267 174 0 chr6 64307843 64308015 -124971539 - MIR SINE MIR -3 259 58 219 69 0 0 chr6 64308729 64308758 -124970796 + (TC)n Simple_repeat Simple_repeat 2 30 0 407 272 0 0 chr6 64308775 64308867 -124970687 - L1MC5 LINE L1 -51 7910 7819 270 56 0 0 chr6 64308869 64308905 -124970649 + (TA)n Simple_repeat Simple_repeat 2 37 0 425 183 61 0 chr6 64308910 64308992 -124970562 - L1MC5 LINE L1 -181 7780 7694 683 280 32 0 chr6 64308994 64309183 -124970371 - MIR SINE MIR -67 195 1 2491 136 57 2 chr6 64309987 64310393 -124969161 + MSTA LTR MaLR 1 428 0 1421 192 56 14 chr6 64310538 64310825 -124968729 - AluJo SINE Alu 0 312 14 40 0 0 0 chr6 64311059 64311099 -124968455 + AT_rich Low_complexity Low_complexity 1 40 0 489 200 58 107 chr6 64311271 64311476 -124968078 - MER117 DNA MER1_type 0 197 3 1672 140 16 75 chr6 64311638 64311959 -124967595 - AluJo SINE Alu -10 302 1 740 227 81 53 chr6 64314109 64314356 -124965198 + MIR SINE MIR 6 259 -3 289 254 79 42 chr6 64314420 64314585 -124964969 - L2 LINE L2 -863 2451 2281 2191 94 16 73 chr6 64314611 64314646 -124964908 + L1MB2 LINE L1 5795 5830 -341 2307 90 0 0 chr6 64314646 64314934 -124964620 + AluSg SINE Alu 1 288 -22 2191 94 16 73 chr6 64314934 64314950 -124964604 + L1MB2 LINE L1 5830 5845 -326 2244 133 0 0 chr6 64314950 64315259 -124964295 + AluSx SINE Alu 1 309 -3 2191 94 16 73 chr6 64315259 64315587 -124963967 + L1MB2 LINE L1 5845 6153 -18 2206 91 14 10 chr6 64315589 64315751 -124963803 - AluSx SINE Alu -14 298 133 2529 64 0 3 chr6 64315751 64316062 -124963492 - AluY SINE Alu -1 310 1 2206 91 14 10 chr6 64316062 64316079 -124963475 - AluSx SINE Alu -179 133 1 887 94 0 0 chr6 64316079 64316196 -124963358 - AluSq/x SINE Alu -195 117 1 341 223 17 97 chr6 64316221 64316396 -124963158 - L2 LINE L2 -152 3161 3001 1759 169 31 0 chr6 64317461 64317751 -124961803 + AluJb SINE Alu 1 299 -13 285 343 78 66 chr6 64318146 64318478 -124961076 - L2 LINE L2 -8 3264 2929 447 241 55 24 chr6 64318503 64318727 -124960827 + L1ME2 LINE L1 5665 5897 -267 1406 178 89 19 chr6 64318939 64319209 -124960345 - AluJb SINE Alu -21 291 3 234 262 66 0 chr6 64319448 64319509 -124960045 + MER112 DNA MER1_type 1 65 -195 2760 10 0 0 chr6 64319515 64319813 -124959741 + AluYa5 SINE Alu 1 298 -13 5352 140 46 22 chr6 64320784 64321175 -124958379 + L1PA16 LINE L1 4628 5008 -1158 2388 122 8 60 chr6 64321175 64321559 -124957995 + THE1B LTR MaLR 1 364 0 5352 140 46 22 chr6 64321559 64321737 -124957817 + L1PA16 LINE L1 5008 5180 -986 1711 167 7 13 chr6 64321737 64322036 -124957518 + AluJb SINE Alu 1 297 -15 5352 140 46 22 chr6 64322036 64322969 -124956585 + L1PA16 LINE L1 5180 6159 -7 578 86 0 0 chr6 64323154 64323224 -124956330 - Alu SINE Alu -19 290 221 1868 185 19 25 chr6 64323738 64323839 -124955715 + MLT1A1 LTR MaLR 1 101 -264 3407 125 47 19 chr6 64323839 64324229 -124955325 + MER1A DNA MER1_type 1 410 -2290 2078 144 0 0 chr6 64324229 64324528 -124955026 + AluSx SINE Alu 1 299 -13 3407 125 47 19 chr6 64324528 64324650 -124954904 + MER1A DNA MER1_type 410 527 0 1868 185 19 25 chr6 64324650 64324915 -124954639 + MLT1A1 LTR MaLR 101 365 0 286 241 0 46 chr6 64327318 64327405 -124952149 - L2 LINE L2 0 3313 3231 321 295 47 54 chr6 64327419 64327568 -124951986 - L1ME4a LINE L1 -254 5867 5720 401 337 6 58 chr6 64328139 64328227 -124951327 - MIR3 SINE MIR -39 169 93 1908 108 4 11 chr6 64328227 64328495 -124951059 + AluSx SINE Alu 33 298 -14 401 337 6 58 chr6 64328495 64328578 -124950976 - MIR3 SINE MIR -115 93 7 984 254 45 4 chr6 64329205 64329449 -124950105 + MIR SINE MIR 9 262 0 1984 151 17 0 chr6 64329469 64329768 -124949786 - AluJo SINE Alu -8 304 1 213 39 0 0 chr6 64329783 64329809 -124949745 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 273 279 103 92 chr6 64329850 64330112 -124949442 - L2 LINE L2 -83 3189 2925 2028 180 25 8 chr6 64330584 64330950 -124948604 + MER47B DNA MER2_type 47 418 0 2306 104 0 19 chr6 64331122 64331431 -124948123 + AluSx SINE Alu 1 303 -9 216 273 111 20 chr6 64331594 64331693 -124947861 + L2 LINE L2 2279 2386 -928 201 344 64 25 chr6 64331961 64332118 -124947436 - MIR3 SINE MIR -42 166 4 394 323 61 75 chr6 64332163 64332457 -124947097 - L2 LINE L2 -5 3267 2978 250 308 99 27 chr6 64332924 64333145 -124946409 - L2 LINE L2 -924 2390 2154 2319 115 0 3 chr6 64334331 64334645 -124944909 - AluSq SINE Alu 0 313 1 2151 118 0 3 chr6 64334691 64334995 -124944559 - AluSx SINE Alu -9 303 1 203 244 0 0 chr6 64336194 64336239 -124943315 + CT-rich Low_complexity Low_complexity 2 46 0 239 347 156 12 chr6 64336498 64336671 -124942883 - MIR SINE MIR -36 226 29 350 277 64 119 chr6 64336691 64337052 -124942502 + L2 LINE L2 2899 3239 -33 528 223 147 33 chr6 64337074 64337258 -124942296 - MIR SINE MIR -11 251 47 2109 128 3 3 chr6 64338221 64338511 -124941043 + AluSx SINE Alu 1 290 -22 2198 80 4 0 chr6 64338512 64338786 -124940768 + AluSp SINE Alu 37 311 -2 242 284 149 0 chr6 64338794 64338868 -124940686 - MIR3 SINE MIR -15 193 109 1551 145 52 31 chr6 64338937 64339227 -124940327 + AluJo SINE Alu 1 296 -16 207 290 65 0 chr6 64342572 64342634 -124936920 + MER5C DNA MER1_type 19 84 -240 2126 134 0 7 chr6 64342700 64343005 -124936549 - AluJb SINE Alu -9 303 1 288 0 0 0 chr6 64343825 64343857 -124935697 + (A)n Simple_repeat Simple_repeat 1 32 0 268 287 23 11 chr6 64344651 64344738 -124934816 - L2 LINE L2 -2 3311 3224 209 255 98 0 chr6 64345539 64345590 -124933964 - MIR SINE MIR -78 130 75 638 241 316 14 chr6 64346651 64346996 -124932558 - L2 LINE L2 -32 3281 2833 764 291 58 17 chr6 64347431 64347672 -124931882 - MIR SINE MIR 0 262 12 2180 112 13 0 chr6 64348326 64348629 -124930925 - AluSp SINE Alu -6 307 1 1664 204 57 76 chr6 64349029 64349505 -124930049 + MLT1C LTR MaLR 1 467 0 645 49 0 0 chr6 64350132 64350213 -124929341 + (TG)n Simple_repeat Simple_repeat 1 81 0 821 208 107 19 chr6 64350440 64350656 -124928898 - MIR SINE MIR -2 260 26 482 219 122 24 chr6 64350665 64350870 -124928684 - L1MC5 LINE L1 -30 7931 7707 970 201 43 63 chr6 64350893 64351242 -124928312 - L1MC5 LINE L1 -202 7759 7418 250 350 121 7 chr6 64351481 64351621 -124927933 - MIR3 SINE MIR -49 159 4 181 305 0 17 chr6 64351953 64352012 -124927542 + MIR3 SINE MIR 99 156 -52 380 232 102 68 chr6 64352071 64352248 -124927306 + MER112 DNA MER1_type 71 253 -7 305 325 58 8 chr6 64352292 64352412 -124927142 - L2 LINE L2 -2 3311 3186 1796 121 36 0 chr6 64353361 64353609 -124925945 - AluSx SINE Alu -55 257 1 2425 76 7 0 chr6 64354231 64354535 -124925019 - AluSq SINE Alu -6 307 2 21 0 0 0 chr6 64354675 64354696 -124924858 + AT_rich Low_complexity Low_complexity 1 21 0 232 287 30 50 chr6 64355111 64355212 -124924342 + MER5A DNA MER1_type 55 153 -36 871 103 9 0 chr6 64355609 64355725 -124923829 + FLAM_C SINE Alu 2 118 -15 551 172 0 9 chr6 64355726 64355842 -124923712 + GA-rich Low_complexity Low_complexity 1 115 0 21 36 0 0 chr6 64358865 64358893 -124920661 + AT_rich Low_complexity Low_complexity 1 28 0 258 296 59 27 chr6 64358992 64359178 -124920376 - L1ME LINE L1 -216 5905 5714 1460 150 69 75 chr6 64359632 64359938 -124919616 - AluJb SINE Alu -8 304 1 186 333 0 0 chr6 64361147 64361198 -124918356 - L2 LINE L2 -1 3271 3221 22 0 0 0 chr6 64361741 64361763 -124917791 + AT_rich Low_complexity Low_complexity 1 22 0 383 330 167 27 chr6 64362312 64363054 -124916500 + L2 LINE L2 1830 2675 -639 512 314 105 45 chr6 64363156 64363789 -124915765 + L2 LINE L2 2456 3222 -91 518 288 88 0 chr6 64364047 64364207 -124915347 + MIR3 SINE MIR 24 197 -11 14043 194 51 11 chr6 64364322 64370842 -124908712 - L1PB1 LINE L1 0 6867 6 213 121 0 0 chr6 64371014 64371047 -124908507 + (TA)n Simple_repeat Simple_repeat 1 33 0 913 275 103 39 chr6 64371167 64371527 -124908027 + L2 LINE L2 2126 2508 -806 677 284 60 11 chr6 64372043 64372226 -124907328 + MIR3 SINE MIR 14 205 -3 2059 143 0 0 chr6 64372769 64373070 -124906484 - AluSx SINE Alu -10 302 2 267 190 17 0 chr6 64373554 64373612 -124905942 - MER58 DNA MER1_type 0 2420 2362 1354 182 29 113 chr6 64373614 64374031 -124905523 - MLT1B LTR MaLR -1 389 8 806 218 113 8 chr6 64374037 64374276 -124905278 - MER58 DNA MER1_type -68 273 10 259 246 0 16 chr6 64375519 64375580 -124903974 - L2 LINE L2 -5 3308 3249 632 277 62 5 chr6 64375663 64375887 -124903667 - L2 LINE L2 -91 3222 2986 2272 172 10 0 chr6 64376199 64376605 -124902949 + MER82 DNA MER2_type 2 411 -242 249 33 0 0 chr6 64376609 64376639 -124902915 + (TATATG)n Simple_repeat Simple_repeat 4 33 0 6494 163 22 3 chr6 64376639 64378422 -124901132 - L1P4 LINE L1 -388 5780 3961 17558 49 0 4 chr6 64378428 64381400 -124898154 - L1PA5 LINE L1 -2 6152 3179 24 0 0 0 chr6 64381407 64381431 -124898123 + AT_rich Low_complexity Low_complexity 1 24 0 1736 51 0 0 chr6 64381431 64381645 -124897909 - L1PA2 LINE L1 -3 6152 5939 22544 80 8 3 chr6 64381645 64384823 -124894731 - L1PA5 LINE L1 -2951 3195 2 10856 201 11 12 chr6 64384823 64385231 -124894323 - L1P4 LINE L1 -2173 3973 3566 2449 64 14 0 chr6 64385231 64385526 -124894028 + AluY SINE Alu 1 299 -12 10856 201 11 12 chr6 64385526 64386906 -124892648 - L1P4 LINE L1 -2580 3566 2184 2099 123 0 3 chr6 64386906 64387228 -124892326 - AluSx SINE Alu 0 321 1 10856 201 11 12 chr6 64387228 64387894 -124891660 - L1P4 LINE L1 -3962 2184 1519 1599 212 7 3 chr6 64388424 64388730 -124890824 - AluJo SINE Alu -5 307 1 2009 149 7 0 chr6 64390938 64391234 -124888320 + AluJb SINE Alu 1 298 -14 2372 103 0 0 chr6 64391501 64391803 -124887751 + AluY SINE Alu 1 302 -9 383 294 58 58 chr6 64391958 64392233 -124887321 + L1ME2 LINE L1 5748 6022 -142 22 0 0 0 chr6 64392272 64392294 -124887260 + AT_rich Low_complexity Low_complexity 1 22 0 2085 125 0 3 chr6 64392760 64393057 -124886497 + AluSx SINE Alu 1 296 -16 905 197 13 44 chr6 64394130 64394358 -124885196 + L1ME1 LINE L1 4786 5006 -1140 225 188 0 0 chr6 64394358 64394406 -124885148 + Alu SINE Alu 255 302 0 4350 128 115 8 chr6 64394406 64395357 -124884197 + L1PA16 LINE L1 5110 6162 -4 2773 243 51 17 chr6 64395369 64395781 -124883773 + L1ME1 LINE L1 5159 5556 -610 2354 60 0 7 chr6 64395781 64396105 -124883449 - AluY SINE Alu 0 322 1 2773 243 51 17 chr6 64396105 64396668 -124882886 + L1ME1 LINE L1 5556 6161 -5 446 260 126 24 chr6 64396681 64397052 -124882502 + L1ME LINE L1 1669 2075 -4465 4198 104 21 2 chr6 64397204 64397826 -124881728 - L1PA13 LINE L1 -2 6161 5528 338 310 33 16 chr6 64397908 64398211 -124881343 + L1ME LINE L1 2711 3018 -3522 954 267 88 54 chr6 64398252 64398733 -124880821 + L1ME LINE L1 3193 3656 -2884 2201 114 7 7 chr6 64398733 64399031 -124880523 + AluSx SINE Alu 1 298 -14 954 267 88 54 chr6 64399031 64399150 -124880404 + L1ME LINE L1 3656 3770 -2770 2088 82 52 36 chr6 64399150 64399455 -124880099 - AluY SINE Alu -1 310 1 954 267 88 54 chr6 64399455 64399801 -124879753 + L1ME LINE L1 3770 4172 -2368 474 344 5 15 chr6 64400455 64400650 -124878904 + L2 LINE L2 3121 3313 0 336 301 84 28 chr6 64401339 64401588 -124877966 + L1ME LINE L1 5711 5973 -542 29 78 0 0 chr6 64401593 64401657 -124877897 + AT_rich Low_complexity Low_complexity 1 64 0 2013 137 3 14 chr6 64401659 64401951 -124877603 + AluSx SINE Alu 1 289 -23 246 74 56 0 chr6 64401951 64402005 -124877549 + (TA)n Simple_repeat Simple_repeat 2 58 0 501 376 53 51 chr6 64402390 64402823 -124876731 + L2 LINE L2 2830 3263 -9 2178 107 7 0 chr6 64403315 64403613 -124875941 - AluSx SINE Alu -12 300 1 22 35 0 0 chr6 64403812 64403841 -124875713 + AT_rich Low_complexity Low_complexity 1 29 0 323 321 36 24 chr6 64406635 64406803 -124872751 - MIR SINE MIR -73 189 20 183 215 28 140 chr6 64406836 64406943 -124872611 + L3 LINE CR1 190 284 -1293 218 167 0 0 chr6 64407123 64407159 -124872395 + (TG)n Simple_repeat Simple_repeat 2 37 0 308 304 75 63 chr6 64407453 64407706 -124871848 + L1MDa LINE L1 963 1218 -5312 2176 124 0 7 chr6 64407716 64408022 -124871532 + AluSx SINE Alu 1 304 -8 34 0 0 0 chr6 64408026 64408060 -124871494 + AT_rich Low_complexity Low_complexity 1 34 0 231 132 19 0 chr6 64408234 64408287 -124871267 + L1PA15 LINE L1 6112 6165 0 727 255 195 8 chr6 64408299 64408699 -124870855 + L1MDa LINE L1 4346 4820 -1720 1470 241 143 54 chr6 64409009 64409631 -124869923 + L1MDa LINE L1 4859 5424 -1140 1802 166 0 3 chr6 64409631 64409914 -124869640 + AluSx SINE Alu 1 282 -30 180 0 0 0 chr6 64409915 64409935 -124869619 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 1470 241 143 54 chr6 64409935 64410173 -124869381 + L1MDa LINE L1 5424 5639 -925 1462 173 58 18 chr6 64410173 64410450 -124869104 + AluJo SINE Alu 1 288 -24 1470 241 143 54 chr6 64410450 64411123 -124868431 + L1MDa LINE L1 5639 6518 -46 890 293 99 18 chr6 64411855 64412247 -124867307 - L2 LINE L2 0 3313 2890 531 201 126 75 chr6 64412257 64412431 -124867123 + MER97c DNA MER1_type? 1 183 -907 2596 215 71 15 chr6 64412431 64413160 -124866394 + L1MC4a LINE L1 7021 7790 -18 331 274 0 11 chr6 64413250 64413345 -124866209 - L2 LINE L2 -512 2802 2709 7695 23 1 0 chr6 64413670 64414571 -124864983 + L1PA2 LINE L1 5254 6155 0 666 227 41 137 chr6 64414750 64415115 -124864439 + MER102b DNA MER1_type 4 333 -8 2647 252 39 49 chr6 64416100 64416119 -124863435 - L2 LINE L2 -1 3312 3294 2365 143 51 5 chr6 64416119 64416533 -124863021 - Tigger2a DNA MER2_type 0 434 2 2647 252 39 49 chr6 64416533 64417637 -124861917 - L2 LINE L2 -19 3294 2188 288 0 0 0 chr6 64417637 64417669 -124861885 + (TC)n Simple_repeat Simple_repeat 1 32 0 1401 163 70 33 chr6 64417669 64417939 -124861615 - AluJo SINE Alu -32 280 1 520 248 222 0 chr6 64417939 64418092 -124861462 - L2 LINE L2 -1120 2194 2008 5103 170 54 42 chr6 64418093 64418190 -124861364 - Tigger6a DNA MER2_type -535 1062 968 2349 81 0 7 chr6 64418190 64418485 -124861069 + AluSg SINE Alu 2 294 -16 5103 170 54 42 chr6 64418485 64419434 -124860120 - Tigger6a DNA MER2_type -629 968 3 2471 186 92 5 chr6 64419456 64419903 -124859651 - MER66B LTR ERV1 0 486 1 396 157 8 74 chr6 64419926 64420047 -124859507 - L2 LINE L2 -1392 1922 1810 419 210 140 49 chr6 64520786 64520881 -124758673 - MIR SINE MIR -42 220 106 2218 116 3 0 chr6 64520881 64521192 -124758362 + AluSx SINE Alu 1 312 0 419 210 140 49 chr6 64521192 64521239 -124758315 - MIR SINE MIR -156 106 65 1289 161 102 41 chr6 64521760 64522100 -124757454 - MSTA LTR MaLR -4 424 19 1965 230 15 7 chr6 64522362 64522692 -124756862 - L1PA15-16 LINE L1 -2865 3984 3647 2258 118 0 10 chr6 64522692 64522998 -124756556 - AluSx SINE Alu -9 303 1 1965 230 15 7 chr6 64522998 64523206 -124756348 - L1PA15-16 LINE L1 -3202 3647 3442 351 250 10 0 chr6 64523325 64523421 -124756133 + L1MC/D LINE L1 5089 5185 -961 1885 146 3 31 chr6 64523421 64523742 -124755812 + AluSx SINE Alu 1 312 0 2001 119 7 0 chr6 64523754 64524031 -124755523 + AluSx SINE Alu 1 279 -33 309 256 112 40 chr6 64524063 64524188 -124755366 + L1MC/D LINE L1 5176 5309 -837 1085 179 84 68 chr6 64524219 64524470 -124755084 - AluJb SINE Alu -57 255 1 574 216 54 48 chr6 64524470 64524637 -124754917 + L1MC/D LINE L1 5305 5472 -770 4792 231 11 30 chr6 64525261 64526940 -124752614 - L1PA15-16 LINE L1 -3490 3359 1718 650 179 57 0 chr6 64526962 64527102 -124752452 - AluSc SINE Alu -8 301 154 2845 10 0 0 chr6 64527395 64527706 -124751848 - AluYa5 SINE Alu 0 311 1 1078 160 123 47 chr6 64527730 64528030 -124751524 - MER33 DNA MER1_type -1 323 1 1694 194 0 7 chr6 64528064 64528374 -124751180 + AluJo SINE Alu 1 308 -4 211 348 18 18 chr6 64528675 64528787 -124750767 - L2 LINE L2 -218 3054 2943 317 240 50 0 chr6 64529109 64529209 -124750345 - MER67C LTR ERV1 -2 708 604 189 0 0 0 chr6 64529310 64529331 -124750223 + (G)n Simple_repeat Simple_repeat 1 21 0 23 33 0 0 chr6 64530228 64530258 -124749296 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 64530841 64530869 -124748685 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr6 64531035 64531062 -124748492 + AT_rich Low_complexity Low_complexity 1 27 0 1794 114 0 50 chr6 64531906 64532187 -124747367 - AluSx SINE Alu -9 303 37 374 286 19 29 chr6 64532203 64532308 -124747246 - L2 LINE L2 0 3272 3169 182 219 188 0 chr6 64532389 64532453 -124747101 + MIR3 SINE MIR 133 208 0 634 184 121 7 chr6 64532852 64532993 -124746561 + AluYa5 SINE Alu 155 311 0 548 280 29 29 chr6 64533003 64533210 -124746344 + L1M2a LINE L1 411 617 -6949 8262 213 46 17 chr6 64533541 64534436 -124745118 + L1M2a LINE L1 2097 2965 -4600 275 65 22 0 chr6 64534436 64534482 -124745072 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 8262 213 46 17 chr6 64534482 64536940 -124742614 + L1M2a LINE L1 2965 5384 -2181 389 214 0 80 chr6 64538421 64538533 -124741021 - MER5A DNA MER1_type -83 106 4 330 87 0 0 chr6 64538581 64538627 -124740927 + (CA)n Simple_repeat Simple_repeat 2 47 0 5135 155 20 18 chr6 64539104 64539410 -124740144 - MER4D LTR ERV1 0 903 599 2060 110 13 29 chr6 64539410 64539718 -124739836 + AluSq SINE Alu 1 303 -10 5135 155 20 18 chr6 64539718 64540312 -124739242 - MER4D LTR ERV1 -304 599 1 341 151 0 0 chr6 64540816 64540869 -124738685 + LTR45 LTR ERV1 1 53 -472 315 308 25 61 chr6 64541313 64541511 -124738043 - MLT1J LTR MaLR -211 300 110 1259 130 0 0 chr6 64541655 64541832 -124737722 - AluSg/x SINE Alu -42 270 94 32 26 0 0 chr6 64542016 64542055 -124737499 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr6 64543217 64543238 -124736316 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 573 266 40 6 chr6 64543303 64543476 -124736078 + MER93b LTR ERV1 191 369 -4 239 129 0 0 chr6 64543540 64543571 -124735983 - AluSq SINE Alu -52 250 220 1254 150 0 0 chr6 64543571 64543758 -124735796 - AluSq SINE Alu -126 187 1 1416 173 124 50 chr6 64544020 64544343 -124735211 + MLT2C1 LTR ERVL 4 350 -47 224 308 81 81 chr6 64544557 64544601 -124734953 + L2 LINE L2 2966 3009 -304 1941 121 0 60 chr6 64544601 64544915 -124734639 - AluSq SINE Alu -18 295 1 224 308 81 81 chr6 64544915 64545042 -124734512 + L2 LINE L2 3008 3137 -176 233 318 16 0 chr6 64545138 64545201 -124734353 - MER2 DNA MER2_type 0 345 282 572 164 26 9 chr6 64545275 64545391 -124734163 - MER2 DNA MER2_type -162 183 66 50 31 0 0 chr6 64545391 64545455 -124734099 + AT_rich Low_complexity Low_complexity 1 64 0 221 70 70 0 chr6 64545455 64545512 -124734042 + (TATAA)n Simple_repeat Simple_repeat 4 64 0 569 189 11 0 chr6 64545519 64545614 -124733940 - MER2 DNA MER2_type -248 97 2 266 252 57 89 chr6 64545614 64545737 -124733817 + MLT1J LTR MaLR 104 222 -289 277 262 50 78 chr6 64546018 64546159 -124733395 + L2 LINE L2 3153 3289 -24 366 23 0 0 chr6 64546524 64546567 -124732987 + (T)n Simple_repeat Simple_repeat 1 43 0 2483 219 31 22 chr6 64546667 64547246 -124732308 - L1M1 LINE L1 -6960 605 22 862 218 38 17 chr6 64548684 64548923 -124730631 + MER96B DNA MER1_type? 2 245 -172 1980 144 0 16 chr6 64549064 64549369 -124730185 - AluSx SINE Alu -12 300 1 400 245 46 26 chr6 64549830 64549978 -124729576 + MLT1J2 LTR MaLR 1 150 -261 429 103 0 0 chr6 64551012 64551070 -124728484 - THE1A LTR MaLR -295 60 3 11607 98 3 1 chr6 64551072 64552649 -124726905 - THE1A-int LTR MaLR 0 1580 1 2513 111 6 0 chr6 64552649 64553002 -124726552 - THE1A LTR MaLR 0 355 1 1320 91 6 17 chr6 64553002 64553203 -124726351 + THE1B LTR MaLR 172 364 0 2709 130 7 19 chr6 64553458 64553889 -124725665 - MSTA LTR MaLR 0 428 3 1665 172 40 20 chr6 64554060 64554363 -124725191 - AluSq SINE Alu -4 309 1 1008 186 42 25 chr6 64554394 64554630 -124724924 - AluSq SINE Alu -30 283 44 272 331 52 22 chr6 64554886 64554943 -124724611 + L2 LINE L2 3168 3222 -91 1962 91 0 0 chr6 64554943 64555195 -124724359 - AluY SINE Alu -5 306 55 272 331 52 22 chr6 64555195 64555273 -124724281 + L2 LINE L2 3222 3307 -6 1108 162 24 19 chr6 64555405 64555615 -124723939 - AluJb SINE Alu -7 305 95 313 259 134 27 chr6 64556138 64556250 -124723304 - MIR SINE MIR -21 241 118 1771 177 0 3 chr6 64556378 64556689 -124722865 + AluJb SINE Alu 3 312 0 547 248 54 108 chr6 64556890 64557185 -124722369 - MER102b DNA MER1_type -33 308 30 214 204 0 20 chr6 64557387 64557436 -124722118 + CT-rich Low_complexity Low_complexity 1 48 0 1074 203 32 8 chr6 64557808 64557965 -124721589 - L1MD3 LINE L1 -14 7981 7814 1710 95 0 0 chr6 64557965 64558187 -124721367 + AluSg/x SINE Alu 78 299 -11 1074 203 32 8 chr6 64558187 64558275 -124721279 - L1MD3 LINE L1 -181 7814 7730 21 0 0 0 chr6 64558711 64558732 -124720822 + AT_rich Low_complexity Low_complexity 1 21 0 226 300 0 0 chr6 64561861 64561931 -124717623 - MIR SINE MIR -5 257 188 329 190 17 0 chr6 64562402 64562460 -124717094 - Tigger5 DNA MER2_type 0 2323 2265 611 336 106 27 chr6 64562614 64562710 -124716844 - L2 LINE L2 -364 2950 2863 2113 132 0 0 chr6 64562710 64563013 -124716541 + AluSg SINE Alu 1 303 -7 611 336 106 27 chr6 64563013 64563360 -124716194 - L2 LINE L2 -451 2863 2472 23 54 0 0 chr6 64563435 64563472 -124716082 + AT_rich Low_complexity Low_complexity 1 37 0 219 254 17 0 chr6 64563820 64563879 -124715675 - L2 LINE L2 -1316 1998 1939 190 164 16 16 chr6 64564737 64564798 -124714756 + GA-rich Low_complexity Low_complexity 6 66 0 365 303 52 39 chr6 64566472 64566627 -124712927 + L2 LINE L2 2594 2750 -564 1506 148 41 30 chr6 64566669 64566940 -124712614 + AluJb SINE Alu 26 299 -13 5694 162 31 15 chr6 64567043 64568144 -124711410 + L1MC1 LINE L1 5211 6332 -1 897 222 8 12 chr6 64568403 64568646 -124710908 - L1M4 LINE L1 -816 5330 5089 299 282 24 24 chr6 64568705 64568829 -124710725 + L1 LINE L1 2419 2542 -3604 330 299 0 0 chr6 64569035 64569102 -124710452 - MER82 DNA MER2_type -128 525 459 352 176 40 0 chr6 64569117 64569191 -124710363 - MER116 DNA Mariner -2 78 2 1549 196 42 10 chr6 64570018 64570324 -124709230 - MER1B DNA MER1_type 0 339 24 225 94 0 0 chr6 64572173 64572205 -124707349 + (TG)n Simple_repeat Simple_repeat 2 33 0 358 273 168 66 chr6 64572253 64572509 -124707045 - MLT1J LTR MaLR -136 375 94 1198 176 0 5 chr6 64573198 64573408 -124706146 + L1 LINE L1 3949 4157 -1989 533 221 50 65 chr6 64573430 64573629 -124705925 - L1M4 LINE L1 -2652 3494 3299 5478 219 58 38 chr6 64573655 64575441 -124704113 + L1MD1 LINE L1 3522 5360 -882 2589 118 0 3 chr6 64575441 64575806 -124703748 - THE1B LTR MaLR 0 364 1 5478 219 58 38 chr6 64575806 64576389 -124703165 + L1MD1 LINE L1 5360 5930 -312 290 214 24 0 chr6 64576394 64576478 -124703076 + L1MD1 LINE L1 6156 6241 -1 460 249 163 69 chr6 64576484 64576877 -124702677 + L1ME LINE L1 4370 4806 -1340 2118 117 3 0 chr6 64576877 64577177 -124702377 + AluSg SINE Alu 1 301 -9 460 249 163 69 chr6 64577177 64577201 -124702353 + L1ME LINE L1 4806 4826 -1320 620 277 92 46 chr6 64577301 64577951 -124701603 + L1ME LINE L1 4900 5573 -589 472 316 54 17 chr6 64578105 64578402 -124701152 + L1PA12 LINE L1 8 315 -7266 749 150 61 0 chr6 64579126 64579273 -124700281 + AluSc SINE Alu 154 309 0 2331 177 40 48 chr6 64579287 64579812 -124699742 + L1PA12 LINE L1 2433 2953 -4621 262 130 0 22 chr6 64579913 64579959 -124699595 + L1PA10 LINE L1 6119 6163 -5 3861 184 55 6 chr6 64579980 64580795 -124698759 - L1 LINE L1 -864 5282 4428 27 29 0 0 chr6 64582412 64582446 -124697108 + AT_rich Low_complexity Low_complexity 1 34 0 3650 127 82 33 chr6 64584062 64584755 -124694799 + LTR8A LTR ERV1 1 727 0 751 163 12 47 chr6 64585193 64585365 -124694189 + LTR28 LTR ERV1 2 167 -853 * 1686 162 70 12 chr6 64585350 64585677 -124693877 + LTR27 LTR ERV1 291 636 0 1166 98 0 0 chr6 64586790 64586953 -124692601 - AluY SINE Alu 0 311 149 1925 127 31 7 chr6 64587038 64587330 -124692224 + AluSx SINE Alu 14 312 0 2057 126 0 35 chr6 64587335 64587468 -124692086 + AluSg SINE Alu 1 137 -173 2379 59 0 16 chr6 64587468 64587771 -124691783 + AluY SINE Alu 1 298 -13 2057 126 0 35 chr6 64587771 64587954 -124691600 + AluSg SINE Alu 137 306 -4 534 57 0 0 chr6 64587996 64588066 -124691488 + (TG)n Simple_repeat Simple_repeat 2 71 0 1811 195 35 47 chr6 64589098 64589504 -124690050 - MLT2D LTR ERVL -11 403 3 346 278 150 103 chr6 64589525 64589644 -124689910 + L1ME LINE L1 375 487 -5632 2201 114 122 16 chr6 64589644 64590030 -124689524 - MSTA LTR MaLR 0 428 2 346 278 150 103 chr6 64590030 64590270 -124689284 + L1ME LINE L1 487 751 -5368 474 316 37 20 chr6 64590296 64590650 -124688904 + L1ME LINE L1 4113 4472 -1657 647 283 144 14 chr6 64590899 64591541 -124688013 + L1ME LINE L1 4897 5632 -515 27 29 0 0 chr6 64591695 64591729 -124687825 + AT_rich Low_complexity Low_complexity 1 34 0 230 265 176 15 chr6 64592648 64592852 -124686702 + L1ME LINE L1 5636 5872 -281 204 260 0 41 chr6 64593621 64593694 -124685860 - L2 LINE L2 -75 3238 3169 240 325 12 12 chr6 64593884 64593967 -124685587 + L1MEd LINE L1 480 562 -5557 399 264 159 6 chr6 64594768 64594931 -124684623 - MIR SINE MIR -24 238 51 210 37 0 0 chr6 64595005 64595032 -124684522 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1496 201 14 11 chr6 64595038 64595316 -124684238 - AluJo SINE Alu -28 284 6 42 20 0 0 chr6 64596096 64596145 -124683409 + AT_rich Low_complexity Low_complexity 1 49 0 1379 110 11 0 chr6 64596414 64596605 -124682949 + AluSg/x SINE Alu 99 291 -19 25 0 0 0 chr6 64597130 64597155 -124682399 + AT_rich Low_complexity Low_complexity 1 25 0 1042 254 67 53 chr6 64597633 64598598 -124680956 - L1ME3A LINE L1 -17 6153 5129 387 327 63 13 chr6 64598925 64599084 -124680470 + MIR SINE MIR 22 188 -74 198 254 135 56 chr6 64599177 64599303 -124680251 - MIR SINE MIR 0 262 127 1190 249 52 30 chr6 64599743 64600105 -124679449 - MLT1A2 LTR MaLR 0 374 5 191 315 213 23 chr6 64600469 64600685 -124678869 - MIR SINE MIR -4 258 2 22 56 0 0 chr6 64601176 64601212 -124678342 + AT_rich Low_complexity Low_complexity 1 36 0 502 276 8 0 chr6 64601791 64601914 -124677640 + FLAM_A SINE Alu 1 124 -9 239 163 92 0 chr6 64603347 64603445 -124676109 + (TA)n Simple_repeat Simple_repeat 2 108 0 857 195 13 0 chr6 64603445 64603604 -124675950 - Tigger2 DNA MER2_type -10 2708 2548 * 963 166 50 10 chr6 64603571 64603770 -124675784 - Tigger2 DNA MER2_type -2505 213 7 299 241 179 9 chr6 64604531 64604643 -124674911 + MIR SINE MIR 118 248 -14 23 33 0 0 chr6 64605592 64605622 -124673932 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 64605951 64605973 -124673581 + AT_rich Low_complexity Low_complexity 1 22 0 5272 105 32 8 chr6 64605973 64606763 -124672791 - L1PA13 LINE L1 0 6163 5355 4654 180 20 29 chr6 64606751 64607644 -124671910 - L1M1 LINE L1 -5939 1626 742 * 283 214 0 0 chr6 64607975 64608031 -124671523 + L1MC4 LINE L1 7475 7530 -512 700 231 108 10 chr6 64608134 64608329 -124671225 + L1MC4a LINE L1 7595 7808 0 282 303 62 0 chr6 64608378 64608523 -124671031 - L1ME LINE L1 -292 5829 5676 247 213 13 55 chr6 64609906 64610017 -124669537 + MER90 LTR ERV1 379 569 -6 201 320 95 54 chr6 64610406 64610553 -124669001 + MIR3 SINE MIR 16 168 -40 270 303 189 8 chr6 64610762 64610884 -124668670 + MER5A DNA MER1_type 46 189 0 211 219 0 0 chr6 64611546 64611587 -124667967 + MIR3 SINE MIR 114 154 -54 237 343 112 21 chr6 64611587 64611639 -124667915 + MER5B DNA MER1_type 4 50 -128 2207 109 0 19 chr6 64611639 64611952 -124667602 - AluSx SINE Alu -5 307 1 237 343 112 21 chr6 64611952 64612042 -124667512 + MER5B DNA MER1_type 50 159 -19 274 306 10 10 chr6 64612071 64612169 -124667385 + MER5A DNA MER1_type 9 106 -83 235 191 0 21 chr6 64612306 64612353 -124667201 + L2 LINE L2 3268 3313 0 226 298 117 58 chr6 64612613 64612801 -124666753 + L2 LINE L2 1913 2111 -1203 637 169 7 7 chr6 64612897 64613039 -124666515 + G-rich Low_complexity Low_complexity 4 145 0 219 282 39 78 chr6 64613363 64613466 -124666088 - MER5A DNA MER1_type -56 133 35 613 233 8 0 chr6 64614640 64614760 -124664794 + MER5A DNA MER1_type 1 121 -68 828 222 11 27 chr6 64614823 64615008 -124664546 + MER5A DNA MER1_type 5 186 -3 2369 103 0 0 chr6 64615051 64615363 -124664191 - AluSx SINE Alu 0 312 1 342 283 148 42 chr6 64616635 64616872 -124662682 - MIR SINE MIR 0 262 1 723 152 109 36 chr6 64617079 64617244 -124662310 - MER3 DNA MER1_type -4 205 29 21 0 0 0 chr6 64617871 64617892 -124661662 + AT_rich Low_complexity Low_complexity 1 21 0 2500 53 0 0 chr6 64618077 64618380 -124661174 - AluY SINE Alu -8 303 1 192 77 0 0 chr6 64618734 64618760 -124660794 + (T)n Simple_repeat Simple_repeat 1 26 0 28 61 0 0 chr6 64619111 64619160 -124660394 + AT_rich Low_complexity Low_complexity 1 49 0 1765 127 4 11 chr6 64619293 64619560 -124659994 + AluSq SINE Alu 1 265 -48 286 140 10 130 chr6 64619661 64619761 -124659793 - L1M4 LINE L1 -1840 4306 4219 2295 96 0 7 chr6 64619835 64620138 -124659416 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr6 64620753 64620774 -124658780 + AT_rich Low_complexity Low_complexity 1 21 0 761 257 171 105 chr6 64622156 64622387 -124657167 + L2 LINE L2 2045 2259 -1054 264 30 0 0 chr6 64622387 64622420 -124657134 + (TG)n Simple_repeat Simple_repeat 2 34 0 761 257 171 105 chr6 64622420 64622637 -124656917 + L2 LINE L2 2259 2460 -853 256 145 0 81 chr6 64622637 64622699 -124656855 - Charlie6 DNA MER1_type -2179 1321 1265 761 257 171 105 chr6 64622699 64623336 -124656218 + L2 LINE L2 2460 3264 -49 614 314 35 43 chr6 64623466 64623724 -124655830 + MIR SINE MIR 7 262 0 1678 175 0 20 chr6 64623786 64624083 -124655471 - AluJo SINE Alu -21 291 1 2426 69 0 3 chr6 64624599 64624905 -124654649 + AluY SINE Alu 1 305 -6 653 148 19 9 chr6 64627935 64628043 -124651511 + FLAM_A SINE Alu 1 109 -33 257 214 143 12 chr6 64628162 64628246 -124651308 + MER103 DNA DNA 2 96 -70 4608 166 31 53 chr6 64628322 64628485 -124651069 - L1MA7 LINE L1 -10 6281 6116 2734 88 5 8 chr6 64628485 64628870 -124650684 + L1PA8 LINE L1 5783 6166 -6 4608 166 31 53 chr6 64628870 64629737 -124649817 - L1MA7 LINE L1 -175 6116 5274 622 92 41 0 chr6 64629736 64629834 -124649720 + L1PA10 LINE L1 5939 6040 -128 * 2090 147 0 0 chr6 64629968 64630280 -124649274 + AluSx SINE Alu 1 312 0 353 295 139 20 chr6 64630393 64630637 -124648917 - L3 LINE CR1 -176 1401 1129 14710 31 1 1 chr6 64630657 64632452 -124647102 + L1P LINE L1 2530 4325 -1821 1074 186 87 29 chr6 64632629 64632972 -124646582 + MSTD LTR MaLR 3 396 0 2100 113 3 3 chr6 64633152 64633445 -124646109 + AluSg1 SINE Alu 1 293 -16 246 62 0 0 chr6 64633445 64633477 -124646077 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 22 35 0 0 chr6 64633520 64633549 -124646005 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 64633702 64633731 -124645823 + AT_rich Low_complexity Low_complexity 1 29 0 547 266 116 9 chr6 64633846 64634079 -124645475 - MER20B DNA MER1_type 0 783 526 280 304 81 62 chr6 64634215 64634376 -124645178 - MER20B DNA MER1_type -542 241 78 195 295 121 24 chr6 64635174 64635340 -124644214 - MIR SINE MIR -59 203 22 2230 108 7 3 chr6 64635966 64636273 -124643281 - AluSx SINE Alu -1 311 4 378 306 132 23 chr6 64637191 64637410 -124642144 + MIR SINE MIR 20 262 0 1063 181 72 1 chr6 64638870 64639129 -124640425 + L1MA8 LINE L1 5755 6038 -120 205 50 25 25 chr6 64639139 64639179 -124640375 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 1516 184 11 0 chr6 64640439 64640700 -124638854 + Tigger7 DNA MER2_type 1 264 -2223 541 216 0 0 chr6 64640702 64640799 -124638755 + Tigger7 DNA MER2_type 2391 2487 0 385 224 154 42 chr6 64640804 64640947 -124638607 + MIR SINE MIR 104 262 0 345 290 11 0 chr6 64641175 64641268 -124638286 + MIR3 SINE MIR 98 191 -17 858 238 84 0 chr6 64641998 64642200 -124637354 + MER58A DNA MER1_type 2 220 -4 26 30 0 0 chr6 64642306 64642339 -124637215 + AT_rich Low_complexity Low_complexity 1 33 0 2143 108 3 19 chr6 64642889 64643196 -124636358 - AluSg SINE Alu -8 302 1 267 245 0 0 chr6 64644159 64644208 -124635346 + L2 LINE L2 3247 3295 -18 2540 142 41 5 chr6 64644989 64645406 -124634148 + MSTB1 LTR MaLR 1 432 0 220 200 0 0 chr6 64645712 64645752 -124633802 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 604 250 0 0 chr6 64645911 64646043 -124633511 + FLAM_A SINE Alu 1 132 -1 2972 143 52 15 chr6 64647116 64647678 -124631876 + LTR24B LTR ERV1 1 635 0 261 309 37 0 chr6 64647798 64647879 -124631675 - L2 LINE L2 -803 2511 2428 2178 189 100 7 chr6 64648021 64648471 -124631083 + MER67C LTR ERV1 1 492 -218 598 76 0 0 chr6 64648571 64648650 -124630904 - AluS SINE Alu -234 79 1 2102 110 0 0 chr6 64648765 64649085 -124630469 + AluSx SINE Alu 1 320 0 198 128 0 0 chr6 64649563 64649602 -124629952 + (T)n Simple_repeat Simple_repeat 1 39 0 582 38 0 25 chr6 64649699 64649779 -124629775 - MER11A LTR ERVK 0 1266 1189 * 702 129 0 0 chr6 64649766 64649867 -124629687 - MER11B LTR ERVK -1135 101 1 441 277 119 11 chr6 64651657 64651834 -124627720 - MIR SINE MIR 0 262 67 376 263 134 27 chr6 64652029 64652253 -124627301 + MER112 DNA MER1_type 2 249 -11 316 325 89 8 chr6 64652861 64652984 -124626570 - MER5A DNA MER1_type -1 188 56 254 341 45 0 chr6 64653664 64653752 -124625802 + MIR SINE MIR 12 103 -159 300 322 107 0 chr6 64653816 64653937 -124625617 - MIR SINE MIR -55 207 74 180 77 0 0 chr6 64654387 64654413 -124625141 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2301 109 0 3 chr6 64654823 64655134 -124624420 + AluSg SINE Alu 1 310 0 48 18 0 0 chr6 64656523 64656578 -124622976 + AT_rich Low_complexity Low_complexity 1 55 0 240 309 74 40 chr6 64656669 64656818 -124622736 + MIR SINE MIR 63 216 -46 240 324 176 25 chr6 64657461 64657665 -124621889 + MIR SINE MIR 22 256 -6 182 316 13 51 chr6 64658067 64658146 -124621408 + MIR SINE MIR 63 138 -124 509 266 19 32 chr6 64658167 64658325 -124621229 + MIR SINE MIR 63 218 -44 213 287 50 59 chr6 64659591 64659692 -124619862 - L2 LINE L2 -505 2809 2710 7221 43 0 4 chr6 64660138 64661462 -124618092 + L1PA5 LINE L1 4832 6151 -3 636 321 106 45 chr6 64662224 64662648 -124616906 - L2 LINE L2 -4 3309 2860 236 370 87 0 chr6 64662727 64662935 -124616619 - L2 LINE L2 -1186 2128 1903 1094 201 21 58 chr6 64662951 64663280 -124616274 + L1M4 LINE L1 4869 5185 -961 290 122 0 0 chr6 64663280 64663321 -124616233 + Alu SINE Alu 1 41 -259 1822 166 77 26 chr6 64663465 64663555 -124615999 + LTR45 LTR ERV1 157 241 -284 1878 144 160 5 chr6 64663555 64663924 -124615630 - MSTA LTR MaLR 0 428 3 1822 166 77 26 chr6 64663924 64664182 -124615372 + LTR45 LTR ERV1 241 523 -2 1564 192 29 0 chr6 64664679 64664986 -124614568 + AluSx SINE Alu 1 315 0 2194 129 3 0 chr6 64665931 64666241 -124613313 + AluSp SINE Alu 1 311 -2 245 359 11 0 chr6 64666293 64666385 -124613169 + MIR SINE MIR 49 141 -121 5059 173 29 25 chr6 64666407 64667779 -124611775 + L1MA7 LINE L1 4635 6020 -271 2183 105 0 16 chr6 64667779 64668092 -124611462 + AluY SINE Alu 1 308 -3 5059 173 29 25 chr6 64668092 64668362 -124611192 + L1MA7 LINE L1 6020 6287 -4 24 32 0 0 chr6 64668411 64668442 -124611112 + AT_rich Low_complexity Low_complexity 1 31 0 225 243 29 29 chr6 64668458 64668528 -124611026 + MIR SINE MIR 178 247 -15 3316 249 177 21 chr6 64668850 64669986 -124609568 + L1MD2 LINE L1 16 1328 -5081 3599 248 26 22 chr6 64670027 64670473 -124609081 + L1MD2 LINE L1 4439 4882 -1561 2235 110 0 0 chr6 64670473 64670765 -124608789 - AluSg SINE Alu -17 293 2 3599 248 26 22 chr6 64670765 64671580 -124607974 + L1MD2 LINE L1 4882 5700 -743 554 181 38 29 chr6 64671580 64671685 -124607869 + U6 snRNA snRNA 1 106 -1 246 245 0 0 chr6 64671702 64671751 -124607803 - MIR SINE MIR -68 140 92 236 207 0 0 chr6 64671803 64671861 -124607693 + L1MD2 LINE L1 5682 5739 -763 2112 112 10 0 chr6 64671907 64672202 -124607352 - AluSx SINE Alu -14 298 1 1541 227 40 42 chr6 64672202 64672651 -124606903 + L1MD2 LINE L1 6171 6618 -1 1584 130 96 7 chr6 64672662 64672954 -124606600 + L1MA8 LINE L1 5793 6110 -181 9688 47 0 0 chr6 64673697 64675667 -124603887 + L1PA5 LINE L1 4175 6148 -6 189 189 0 0 chr6 64675782 64675819 -124603735 + L2 LINE L2 3273 3309 -4 2594 180 19 31 chr6 64676682 64677123 -124602431 - L1MC2 LINE L1 -17 6327 5893 2282 114 0 3 chr6 64677123 64677431 -124602123 - AluSq SINE Alu -5 308 2 2594 180 19 31 chr6 64677431 64677562 -124601992 - L1MC2 LINE L1 -451 5893 5762 1741 254 10 2 chr6 64677566 64678047 -124601507 - L1MC2 LINE L1 -963 5183 4699 2310 105 3 0 chr6 64678515 64678821 -124600733 - AluSg SINE Alu -3 307 1 22 56 0 0 chr6 64678832 64678868 -124600686 + AT_rich Low_complexity Low_complexity 1 36 0 219 355 0 51 chr6 64679406 64679544 -124600010 - MIR SINE MIR -52 210 80 1817 137 40 0 chr6 64679635 64679913 -124599641 + AluSq SINE Alu 1 289 -24 1983 117 37 20 chr6 64679938 64680236 -124599318 + AluSx SINE Alu 1 303 -9 316 341 65 8 chr6 64780798 64780921 -124498633 - L2 LINE L2 0 3272 3143 709 165 8 8 chr6 64780939 64781060 -124498494 + MSTD LTR MaLR 1 121 -275 1934 137 0 51 chr6 64781290 64781604 -124497950 - AluSq SINE Alu -15 298 1 23 33 0 0 chr6 64782064 64782094 -124497460 + AT_rich Low_complexity Low_complexity 1 30 0 863 161 0 0 chr6 64782094 64782212 -124497342 - FLAM_C SINE Alu -15 118 1 238 282 14 28 chr6 64782717 64782788 -124496766 + L2 LINE L2 3244 3313 0 1822 44 0 0 chr6 64784025 64784231 -124495323 + L1PA3 LINE L1 5945 6150 -5 2324 96 0 0 chr6 64784289 64784590 -124494964 - AluSg SINE Alu -4 306 6 2249 102 14 0 chr6 64784788 64785081 -124494473 + AluSx SINE Alu 2 298 -14 384 334 138 60 chr6 64785083 64785481 -124494073 - L2 LINE L2 -22 3250 2822 791 185 217 32 chr6 64785933 64786122 -124493432 - MER58A DNA MER1_type 0 224 1 229 269 0 0 chr6 64786137 64786189 -124493365 + L2 LINE L2 3261 3312 -1 225 364 30 36 chr6 64786476 64786641 -124492913 - MIR SINE MIR -81 181 18 330 306 55 32 chr6 64787444 64787663 -124491891 + L1MC4a LINE L1 5681 5904 -1904 237 279 84 55 chr6 64787483 64787720 -124491834 + L1MB8 LINE L1 5725 5968 -210 * 2267 105 3 0 chr6 64787873 64788177 -124491377 - AluSx SINE Alu -3 309 5 22 35 0 0 chr6 64788228 64788257 -124491297 + AT_rich Low_complexity Low_complexity 1 29 0 229 280 30 55 chr6 64788672 64788872 -124490682 + L1MB2 LINE L1 4464 4658 -1488 2189 111 0 7 chr6 64789116 64789414 -124490140 - AluSx SINE Alu -16 296 1 1019 59 0 15 chr6 64789421 64789433 -124490121 + L1P LINE L1 5068 5079 -1067 407 102 34 0 chr6 64789433 64789492 -124490062 - L1PA6 LINE L1 -10 6144 6084 1019 59 0 15 chr6 64789492 64789614 -124489940 + L1P LINE L1 5079 5200 -946 903 252 181 4 chr6 64790024 64790533 -124489021 + L2 LINE L2 2684 3313 0 266 233 33 67 chr6 64791023 64791151 -124488403 + L1ME4a LINE L1 5264 5388 -2420 1445 199 16 33 chr6 64791151 64791457 -124488097 + AluJo SINE Alu 1 301 -11 266 233 33 67 chr6 64791457 64791478 -124488076 + L1ME4a LINE L1 5388 5408 -2400 5682 158 15 10 chr6 64791520 64792181 -124487373 + L1MB2 LINE L1 4771 5427 -744 552 125 0 0 chr6 64792181 64792261 -124487293 - MADE1 DNA Mariner 0 80 1 5682 158 15 10 chr6 64792261 64792979 -124486575 + L1MB2 LINE L1 5427 6161 -10 30 0 0 0 chr6 64793376 64793406 -124486148 + AT_rich Low_complexity Low_complexity 1 30 0 471 18 0 0 chr6 64793466 64793522 -124486032 + (CA)n Simple_repeat Simple_repeat 1 56 0 443 289 90 48 chr6 64793629 64793893 -124485661 + L1ME4a LINE L1 5519 5771 -350 2236 103 0 14 chr6 64793893 64794185 -124485369 + AluSx SINE Alu 1 288 -24 443 289 90 48 chr6 64794185 64794241 -124485313 + L1ME4a LINE L1 5771 5823 -298 6271 101 4 45 chr6 64794241 64794686 -124484868 + L1PA13 LINE L1 4874 5336 -827 2429 54 20 0 chr6 64794686 64794980 -124484574 + AluY SINE Alu 1 300 -11 6271 101 4 45 chr6 64794980 64795569 -124483985 + L1PA13 LINE L1 5336 5872 -291 2452 74 0 0 chr6 64795569 64795865 -124483689 + AluSg SINE Alu 1 296 -14 6271 101 4 45 chr6 64795865 64796142 -124483412 + L1PA13 LINE L1 5872 6159 -4 443 289 90 48 chr6 64796142 64796398 -124483156 + L1ME4a LINE L1 5823 6120 -1 412 188 76 91 chr6 64797052 64797184 -124482370 + Charlie7 DNA MER1_type 2415 2545 -67 351 0 0 0 chr6 64797184 64797223 -124482331 + (CA)n Simple_repeat Simple_repeat 2 40 0 412 188 76 91 chr6 64797223 64797287 -124482267 + Charlie7 DNA MER1_type 2545 2608 -4 2065 131 14 0 chr6 64798331 64798628 -124480926 + AluSx SINE Alu 1 301 -11 285 283 20 40 chr6 64799173 64799272 -124480282 + L3b LINE CR1 1391 1487 -96 294 219 0 16 chr6 64799522 64799586 -124479968 - MER5B DNA MER1_type 0 178 116 2714 205 16 32 chr6 64799586 64799858 -124479696 + L1M4 LINE L1 4439 4714 -1432 1958 109 40 0 chr6 64799858 64800134 -124479420 + AluSx SINE Alu 5 291 -21 2714 205 16 32 chr6 64800134 64800491 -124479063 + L1M4 LINE L1 4714 5058 -1088 312 340 21 0 chr6 64800519 64800616 -124478938 + MER5B DNA MER1_type 50 148 -30 368 250 40 14 chr6 64802012 64802160 -124477394 + L1ME1 LINE L1 35 186 -6210 5145 228 56 53 chr6 64802179 64802274 -124477280 + L1ME1 LINE L1 3597 3690 -2525 1356 213 51 11 chr6 64802274 64802429 -124477125 - AluJo SINE Alu -28 284 112 279 0 0 0 chr6 64802429 64802460 -124477094 + (TG)n Simple_repeat Simple_repeat 2 32 0 1356 213 51 11 chr6 64802460 64802577 -124476977 - AluJo SINE Alu -200 112 1 5145 228 56 53 chr6 64802577 64802928 -124476626 + L1ME1 LINE L1 3690 4039 -2176 1989 138 42 30 chr6 64802928 64803261 -124476293 - MER1B DNA MER1_type 0 337 1 5145 228 56 53 chr6 64803261 64804602 -124474952 + L1ME1 LINE L1 4039 5390 -825 2112 192 57 22 chr6 64804610 64804869 -124474685 + L1MDa LINE L1 15 298 -6242 246 32 0 0 chr6 64804869 64804900 -124474654 + (CA)n Simple_repeat Simple_repeat 2 32 0 2112 192 57 22 chr6 64804900 64805093 -124474461 + L1MDa LINE L1 298 483 -6057 559 181 0 26 chr6 64805583 64805598 -124473956 + L1MA7 LINE L1 6164 6178 -113 2261 98 0 7 chr6 64805598 64805895 -124473659 - AluSx SINE Alu -17 295 1 559 181 0 26 chr6 64805895 64806034 -124473520 + L1MA7 LINE L1 6178 6289 -2 970 213 65 21 chr6 64806077 64806468 -124473086 - L1ME2 LINE L1 -47 6119 5689 265 174 47 58 chr6 64806470 64806556 -124472998 + L1ME LINE L1 5813 5897 -224 2656 195 57 117 chr6 64806664 64807576 -124471978 + L1ME1 LINE L1 5379 6235 0 187 328 45 0 chr6 64808111 64808178 -124471376 + MIR SINE MIR 36 105 -157 2167 96 3 0 chr6 64808186 64808468 -124471086 - AluSp SINE Alu 0 313 31 2560 104 27 77 chr6 64808468 64808878 -124470676 - LTR12 LTR ERV1 -125 2313 1884 2040 75 4 19 chr6 64808878 64809146 -124470408 - AluY SINE Alu -16 295 32 2560 104 27 77 chr6 64809146 64809232 -124470322 - LTR12 LTR ERV1 -554 1884 1 363 224 84 19 chr6 64809249 64809356 -124470198 + MIR SINE MIR 76 189 -73 1652 141 53 7 chr6 64809370 64809654 -124469900 + AluJo SINE Alu 13 309 -3 573 303 13 7 chr6 64810609 64810764 -124468790 - MIR SINE MIR -71 191 36 2258 128 23 0 chr6 64811228 64811580 -124467974 + L1MA9 LINE L1 5953 6312 0 195 42 0 0 chr6 64811994 64812018 -124467536 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 765 197 5 83 chr6 64812373 64812566 -124466988 - MER5B DNA MER1_type 0 178 1 192 239 0 22 chr6 64812582 64812628 -124466926 - L2 LINE L2 -17 3255 3211 289 266 10 78 chr6 64813620 64813812 -124465742 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 604 225 160 100 chr6 64814362 64814811 -124464743 + MLT1K LTR MaLR 1 476 0 193 234 247 13 chr6 64814833 64814910 -124464644 - MIR SINE MIR -101 161 67 21 0 0 0 chr6 64814971 64814992 -124464562 + AT_rich Low_complexity Low_complexity 1 21 0 2023 110 90 16 chr6 64815077 64815387 -124464167 + THE1B LTR MaLR 1 333 -31 1062 185 15 46 chr6 64815712 64815774 -124463780 - MER5A DNA MER1_type 0 189 127 1578 137 103 15 chr6 64815774 64816062 -124463492 + AluSx SINE Alu 1 311 0 1062 185 15 46 chr6 64816062 64816193 -124463361 - MER5A DNA MER1_type -62 127 1 1069 229 59 16 chr6 64816671 64816924 -124462630 + MER45C DNA AcHobo 39 302 -651 520 294 56 0 chr6 64816971 64817131 -124462423 + MER45C DNA AcHobo 431 599 -354 1856 144 28 7 chr6 64817596 64817881 -124461673 + AluJb SINE Alu 1 291 -21 217 196 20 20 chr6 64818630 64818681 -124460873 + GA-rich Low_complexity Low_complexity 1 51 0 392 309 0 0 chr6 64820329 64820426 -124459128 - L2 LINE L2 -1 3271 3175 2065 199 26 21 chr6 64820907 64821325 -124458229 + LTR52 LTR ERVL 1 420 -1 1737 186 0 3 chr6 64821477 64821768 -124457786 + AluJo SINE Alu 5 294 -18 1093 50 30 15 chr6 64821771 64821980 -124457574 + (GAAA)n Simple_repeat Simple_repeat 1 212 0 590 221 23 101 chr6 64822130 64822388 -124457166 + L1MDb LINE L1 788 1025 -5384 276 183 50 0 chr6 64822355 64822415 -124457139 + L1ME1 LINE L1 6346 6408 -18 * 187 319 50 115 chr6 64822529 64822711 -124456843 - L2 LINE L2 -169 3103 2934 391 271 136 39 chr6 64822954 64823336 -124456218 + MLT1J2 LTR MaLR 1 407 -2 472 285 0 28 chr6 64823549 64823693 -124455861 - L3 LINE CR1 -16 1561 1422 763 205 73 0 chr6 64824278 64824483 -124455071 + L1MD1 LINE L1 5114 5333 -813 1989 151 123 3 chr6 64824486 64824844 -124454710 + MSTA LTR MaLR 1 401 -27 6733 59 22 47 chr6 64824862 64826876 -124452678 - SVA Other Other -589 1383 432 386 0 0 85 chr6 64826851 64826910 -124452644 + (GGGAGA)n Simple_repeat Simple_repeat 1 54 0 * 951 100 0 15 chr6 64826911 64827041 -124452513 - AluSg/x SINE Alu -29 283 156 302 98 0 0 chr6 64827041 64827082 -124452472 + MSTA LTR MaLR 388 428 0 515 131 162 0 chr6 64827082 64827181 -124452373 + L1MD1 LINE L1 5332 5446 -796 279 0 0 0 chr6 64827867 64827898 -124451656 + (CA)n Simple_repeat Simple_repeat 2 32 0 4485 151 49 18 chr6 64827907 64828697 -124450857 + L1MD1 LINE L1 5428 6242 0 2011 109 13 33 chr6 64828706 64829010 -124450544 + AluSq SINE Alu 1 298 -15 517 240 25 0 chr6 64829013 64829134 -124450420 + MER5B DNA MER1_type 55 178 0 2140 106 0 35 chr6 64829390 64829702 -124449852 - AluSx SINE Alu -11 301 1 1285 164 65 9 chr6 64829782 64830013 -124449541 + Tigger7 DNA MER2_type 23 266 -284 517 153 41 41 chr6 64830012 64830110 -124449444 + Tigger7 DNA MER2_type 2394 2491 0 * 1819 146 7 29 chr6 64830280 64830588 -124448966 - AluJb SINE Alu -11 301 1 196 372 27 21 chr6 64831524 64831712 -124447842 + L2 LINE L2 2849 3037 -276 808 177 0 15 chr6 64831932 64832062 -124447492 + FRAM SINE Alu 26 153 -23 2309 98 0 3 chr6 64832535 64832841 -124446713 + AluSx SINE Alu 1 305 -7 818 186 101 21 chr6 64832849 64833037 -124446517 + MIR SINE MIR 57 259 -3 1528 66 10 30 chr6 64833360 64833558 -124445996 - MER107 DNA MER1_type -1 196 3 313 237 10 41 chr6 64835589 64835686 -124443868 - MIR SINE MIR -119 143 50 291 196 0 0 chr6 64836028 64836074 -124443480 - MER81 DNA DNA -29 85 40 293 231 0 0 chr6 64836075 64836127 -124443427 - MER81 DNA DNA -30 84 33 273 208 0 0 chr6 64836131 64836179 -124443375 - MER81 DNA DNA -40 74 27 * 309 169 124 79 chr6 64836147 64836236 -124443318 - MER81 DNA DNA -15 99 7 1368 179 168 31 chr6 64838750 64839102 -124440452 + Charlie4a DNA MER1_type 109 508 0 282 233 111 11 chr6 64839386 64839476 -124440078 - MIR3 SINE MIR -28 180 82 321 244 61 46 chr6 64839893 64840024 -124439530 + L3 LINE CR1 1239 1371 -206 1655 135 18 29 chr6 64840025 64840299 -124439255 + AluJb SINE Alu 23 293 -19 208 235 15 59 chr6 64840529 64840597 -124438957 + MIR SINE MIR 86 150 -112 294 282 64 27 chr6 64842023 64842133 -124437421 - L2 LINE L2 0 3313 3200 535 296 111 79 chr6 64842342 64843009 -124436545 + L2 LINE L2 2314 3002 -270 2370 159 95 9 chr6 64843012 64843433 -124436121 + LTR32 LTR ERVL 15 471 0 865 181 128 0 chr6 64843836 64844024 -124435530 - MIR SINE MIR -6 256 45 661 188 33 77 chr6 64844303 64844484 -124435070 + MIR SINE MIR 80 252 -10 1904 126 53 20 chr6 64844751 64845053 -124434501 - AluSx SINE Alu 0 312 1 1756 184 3 3 chr6 64846130 64846423 -124433131 - AluJb SINE Alu -19 293 1 2288 136 88 13 chr6 64846483 64846879 -124432675 - MSTA LTR MaLR 0 428 3 495 33 0 0 chr6 64848181 64848242 -124431312 + (TG)n Simple_repeat Simple_repeat 1 61 0 435 286 168 25 chr6 64848448 64848651 -124430903 + MIR SINE MIR 5 236 -26 257 357 87 0 chr6 64849799 64849925 -124429629 - L3 LINE CR1 -3 1574 1438 355 326 186 27 chr6 64849928 64850262 -124429292 - L2 LINE L2 -7 3265 2879 291 229 62 21 chr6 64850303 64850399 -124429155 - L2 LINE L2 -557 2757 2658 867 128 0 0 chr6 64850448 64850589 -124428965 + (TA)n Simple_repeat Simple_repeat 1 141 0 345 290 57 57 chr6 64850604 64850728 -124428826 - MIR SINE MIR -62 146 23 485 101 40 0 chr6 64850729 64850828 -124428726 + (TG)n Simple_repeat Simple_repeat 1 103 0 397 254 9 53 chr6 64850831 64850945 -124428609 - MER5B DNA MER1_type 0 178 70 264 340 85 0 chr6 64850940 64851034 -124428520 + L2 LINE L2 3157 3258 -14 * 22 35 0 0 chr6 64852467 64852496 -124427058 + AT_rich Low_complexity Low_complexity 1 29 0 2227 131 0 0 chr6 64853048 64853379 -124426175 + AluSx SINE Alu 1 312 0 2206 112 6 10 chr6 64853470 64853784 -124425770 - AluSp SINE Alu 0 313 1 841 257 153 37 chr6 64854587 64855078 -124424476 + L1ME4a LINE L1 5558 6105 -16 2116 130 30 0 chr6 64855182 64855483 -124424071 + AluSx SINE Alu 1 310 -2 425 341 85 0 chr6 64856698 64856862 -124422692 + MIR3 SINE MIR 23 200 -8 350 300 21 93 chr6 64856985 64857222 -124422332 + HsTC2 DNA Tc2 658 877 -1021 554 284 80 12 chr6 64857968 64858248 -124421306 + L1ME LINE L1 5469 5764 -357 361 253 73 27 chr6 64858259 64858409 -124421145 - L1ME4a LINE L1 -252 5869 5713 2262 105 0 32 chr6 64858869 64859182 -124420372 + AluSg SINE Alu 1 303 -7 2300 100 7 3 chr6 64859199 64859509 -124420045 + AluSx SINE Alu 1 311 -1 656 119 0 0 chr6 64860365 64860449 -124419105 + AluJ/FLAM SINE Alu 2 85 -227 378 250 34 11 chr6 64860910 64860998 -124418556 + MIR SINE MIR 33 122 -86 494 269 39 120 chr6 64861428 64861662 -124417892 + MIR SINE MIR 22 236 -26 829 243 41 129 chr6 64863647 64863960 -124415594 + MLT1H1 LTR MaLR 14 342 -253 * 2765 146 45 5 chr6 64863954 64864398 -124415156 + LTR32 LTR ERVL 10 471 0 1691 215 92 82 chr6 64864686 64865091 -124414463 + L1MC5 LINE L1 6707 7106 -855 1953 152 30 0 chr6 64865091 64865388 -124414166 - AluSx SINE Alu -6 306 1 1691 215 92 82 chr6 64865388 64865472 -124414082 + L1MC5 LINE L1 7106 7188 -773 2426 72 0 20 chr6 64865472 64865777 -124413777 + AluSg SINE Alu 1 299 -11 1691 215 92 82 chr6 64865777 64865978 -124413576 + L1MC5 LINE L1 7188 7405 -556 316 239 54 0 chr6 64866639 64866731 -124412823 + L1MC5 LINE L1 7819 7915 -46 273 57 0 0 chr6 64867583 64867618 -124411936 + (CCAA)n Simple_repeat Simple_repeat 2 36 0 629 254 166 0 chr6 64867767 64867984 -124411570 - LTR50 LTR ERVL -8 787 535 189 0 0 0 chr6 64868080 64868101 -124411453 + (GA)n Simple_repeat Simple_repeat 1 21 0 275 299 139 7 chr6 64868512 64868649 -124410905 + MIR SINE MIR 53 207 -55 24 32 0 0 chr6 64869442 64869473 -124410081 + AT_rich Low_complexity Low_complexity 1 31 0 310 284 0 0 chr6 64869950 64870017 -124409537 - MIR SINE MIR -86 122 56 21 36 0 0 chr6 64870072 64870100 -124409454 + AT_rich Low_complexity Low_complexity 1 28 0 1687 191 64 9 chr6 64870854 64870960 -124408594 + MER7A DNA MER2_type 1 100 -2938 2270 108 3 0 chr6 64870960 64871255 -124408299 - AluSp SINE Alu -17 296 1 1687 191 64 9 chr6 64871255 64871478 -124408076 + MER7A DNA MER2_type 100 346 0 24 53 0 0 chr6 64872126 64872164 -124407390 + AT_rich Low_complexity Low_complexity 1 38 0 1695 175 0 7 chr6 64872172 64872464 -124407090 - AluJo SINE Alu -16 296 7 307 59 20 20 chr6 64873295 64873346 -124406208 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 1217 186 12 59 chr6 64874563 64874816 -124404738 + AluJb SINE Alu 1 241 -71 4380 81 24 0 chr6 64874816 64875357 -124404197 + MER41A LTR ERV1 1 554 0 4163 116 40 15 chr6 64875440 64876046 -124403508 + MER41A-int LTR ERV1 1 621 -5325 * 7416 121 18 43 chr6 64876033 64878319 -124401235 + MER41A-int LTR ERV1 2606 4227 -788 750 91 0 27 chr6 64878347 64878457 -124401097 + MER41A LTR ERV1 92 198 -356 6386 82 24 9 chr6 64878460 64878542 -124401012 + MER41A-int LTR ERV1 5071 5150 -796 2198 119 3 0 chr6 64878542 64878837 -124400717 - AluSx SINE Alu -16 296 1 6386 82 24 9 chr6 64878837 64879613 -124399941 + MER41A-int LTR ERV1 5150 5942 -4 4073 86 30 0 chr6 64879617 64880153 -124399401 + MER41A LTR ERV1 3 554 0 402 98 0 0 chr6 64880155 64880206 -124399348 + AluJb SINE Alu 240 290 -12 331 286 0 12 chr6 64880506 64880590 -124398964 - MER5B DNA MER1_type -92 86 4 254 282 118 0 chr6 64880764 64880874 -124398680 + L1MC5 LINE L1 7292 7414 -547 275 287 11 0 chr6 64880909 64880996 -124398558 + MER5A DNA MER1_type 18 105 -84 329 242 33 8 chr6 64881122 64881242 -124398312 + L1MC5 LINE L1 7475 7597 -364 233 156 0 0 chr6 64881244 64881273 -124398281 - Tigger5 DNA MER2_type 0 2323 2295 2083 47 8 0 chr6 64881273 64881527 -124398027 - MER41A LTR ERV1 0 554 299 2972 184 28 0 chr6 64881692 64882198 -124397356 + MLT2B1 LTR ERVL 1 520 0 388 286 76 17 chr6 64882716 64882835 -124396719 - L2 LINE L2 0 3272 3147 345 324 92 14 chr6 64883427 64883634 -124395920 + MIR SINE MIR 40 262 0 2273 128 0 3 chr6 64884727 64885040 -124394514 - AluSx SINE Alu 0 312 1 1298 236 74 85 chr6 64885436 64885990 -124393564 - MLT1H1 LTR MaLR 0 555 8 1657 128 15 47 chr6 64887451 64887725 -124391829 + AluJb SINE Alu 16 280 -32 2127 138 30 41 chr6 64889514 64889731 -124389823 + MLT1A1 LTR MaLR 1 214 -151 1977 125 75 31 chr6 64889731 64890090 -124389464 + THE1C LTR MaLR 1 375 0 2127 138 30 41 chr6 64890090 64890241 -124389313 + MLT1A1 LTR MaLR 214 365 0 342 244 51 77 chr6 64890712 64890767 -124388787 + L2 LINE L2 3047 3102 -211 2123 132 48 28 chr6 64890767 64891124 -124388430 + THE1B LTR MaLR 1 364 0 342 244 51 77 chr6 64891124 64891342 -124388212 + L2 LINE L2 3102 3313 0 * 457 315 27 7 chr6 64891335 64891484 -124388070 + MIR3 SINE MIR 8 159 -49 2487 70 0 0 chr6 64892386 64892687 -124386867 + AluY SINE Alu 1 301 -10 820 247 99 34 chr6 64893083 64893115 -124386439 - L1ME1 LINE L1 -11 6159 6131 1709 91 0 5 chr6 64893115 64893335 -124386219 + AluSq SINE Alu 79 297 -16 820 247 99 34 chr6 64893335 64893374 -124386180 - L1ME1 LINE L1 -39 6131 6096 2131 130 3 7 chr6 64893374 64893673 -124385881 - AluSx SINE Alu -14 298 1 820 247 99 34 chr6 64893673 64893964 -124385590 - L1ME1 LINE L1 -74 6096 5798 1155 215 9 0 chr6 64893972 64894186 -124385368 - MLT1C LTR MaLR -8 459 244 418 308 223 0 chr6 64894635 64894976 -124384578 + L2 LINE L2 1739 2155 -1159 2042 209 62 5 chr6 64894986 64895392 -124384162 + MLT1F1 LTR MaLR 139 567 0 244 238 113 0 chr6 64895547 64895627 -124383927 + L2 LINE L2 3217 3305 -8 462 235 128 66 chr6 64896381 64896590 -124382964 + LTR33 LTR ERVL 218 445 -76 2053 123 67 17 chr6 64896590 64896947 -124382607 + THE1C LTR MaLR 1 375 0 462 235 128 66 chr6 64896947 64896980 -124382574 + LTR33 LTR ERVL 445 475 -46 1908 163 7 0 chr6 64896980 64897287 -124382267 - AluSx SINE Alu -3 309 1 28 0 0 0 chr6 64897500 64897528 -124382026 + AT_rich Low_complexity Low_complexity 1 28 0 1695 171 99 38 chr6 64898235 64898579 -124380975 + MER93b LTR ERV1 9 373 0 549 176 157 57 chr6 64899100 64899259 -124380295 + MLT1C LTR MaLR 2 176 -291 2691 164 62 0 chr6 64899283 64899747 -124379807 - LTR42 LTR ERVL -2 493 1 4598 95 20 25 chr6 64900097 64900264 -124379290 + HUERS-P3 LTR ERV1 4009 4175 -3243 2233 74 0 0 chr6 64900264 64900533 -124379021 + AluY SINE Alu 39 307 -4 4598 95 20 25 chr6 64900533 64901034 -124378520 + HUERS-P3 LTR ERV1 4175 6694 -724 3261 125 0 0 chr6 64901031 64901479 -124378075 + HUERS-P3 LTR ERV1 8469 8916 -3 * 3789 104 35 11 chr6 64901481 64902028 -124377526 + LTR9B LTR ERV1 1 560 -84 234 0 0 0 chr6 64902028 64902054 -124377500 + (A)n Simple_repeat Simple_repeat 1 26 0 319 28 0 0 chr6 64903401 64903437 -124376117 - U2 snRNA snRNA -152 36 1 305 332 65 37 chr6 64903723 64904302 -124375252 - LTR57-int LTR ERVL -1267 4076 3639 1798 146 25 41 chr6 64904522 64904837 -124374717 - MSTB LTR MaLR -9 417 108 1943 187 31 104 chr6 64904840 64905417 -124374137 + MLT2B3 LTR ERVL 20 554 0 783 145 0 0 chr6 64905417 64905534 -124374020 - MSTB LTR MaLR -309 117 1 1003 311 79 49 chr6 64906056 64906940 -124372614 - LTR57-int LTR ERVL -3139 2908 1998 948 151 52 58 chr6 64906967 64907208 -124372346 + MLT2A2 LTR ERVL 293 453 0 2052 128 0 64 chr6 64907579 64907908 -124371646 - AluSx SINE Alu -4 308 1 2751 140 28 5 chr6 64908120 64908548 -124371006 - LTR42 LTR ERVL -51 444 7 1218 220 57 10 chr6 64908567 64908867 -124370687 + MLT1C LTR MaLR 145 458 -9 21 36 0 0 chr6 64911049 64911077 -124368477 + AT_rich Low_complexity Low_complexity 1 28 0 840 221 55 18 chr6 64911107 64911324 -124368230 + AluJo SINE Alu 86 310 -2 2098 222 20 26 chr6 64912303 64912844 -124366710 - L1MB7 LINE L1 -68 6116 5579 547 282 14 50 chr6 64915183 64915403 -124364151 + MIR SINE MIR 49 260 -2 1313 199 76 14 chr6 64915650 64915941 -124363613 + MER65A LTR ERV1 137 445 0 878 213 5 0 chr6 64916552 64916740 -124362814 - MER53 DNA DNA 0 189 1 235 260 91 0 chr6 64916756 64916833 -124362721 + L2 LINE L2 2886 2969 -303 298 262 78 10 chr6 64917030 64917133 -124362421 - L1MC5 LINE L1 -46 7915 7806 1118 274 120 16 chr6 64917170 64917604 -124361950 + MLT1D LTR MaLR 27 505 0 485 205 40 107 chr6 64917609 64917907 -124361647 - L1MC5 LINE L1 -160 7801 7524 3328 202 26 83 chr6 64918149 64919176 -124360378 - LTR5 LTR ERVK 0 969 1 205 380 13 0 chr6 64919427 64919506 -124360048 - L2 LINE L2 -598 2716 2637 2168 221 28 31 chr6 64923563 64924169 -124355385 - L1MB7 LINE L1 0 6184 5581 1879 169 14 0 chr6 64925086 64925381 -124354173 - AluSx SINE Alu -13 299 1 421 207 74 22 chr6 64926883 64927018 -124352536 + L2 LINE L2 3169 3310 -3 849 259 46 28 chr6 64927121 64927553 -124352001 - L1MC5 LINE L1 -30 7931 7492 249 83 0 0 chr6 64927849 64927885 -124351669 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 202 319 104 18 chr6 64928152 64928315 -124351239 - MIR SINE MIR -3 259 83 266 281 175 9 chr6 64928740 64928854 -124350700 - MIR SINE MIR -74 188 56 492 222 133 11 chr6 64928895 64929075 -124350479 - MER112 DNA MER1_type 0 260 59 2172 135 3 0 chr6 64929442 64929754 -124349800 - AluSq SINE Alu 0 313 1 251 313 129 7 chr6 64930367 64930514 -124349040 - MIR SINE MIR -85 177 13 302 247 62 0 chr6 64930943 64931040 -124348514 + MIR SINE MIR 95 197 -65 417 241 29 17 chr6 64931148 64931322 -124348232 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 608 199 21 86 chr6 64931570 64931700 -124347854 + MER20 DNA MER1_type 4 120 -99 6024 129 21 21 chr6 64931700 64932669 -124346885 + LTR5 LTR ERVK 1 969 0 608 199 21 86 chr6 64932669 64932724 -124346830 + MER20 DNA MER1_type 120 177 -42 253 278 97 0 chr6 64932794 64932866 -124346688 - MIR SINE MIR -91 117 39 889 186 57 6 chr6 64933736 64933913 -124345641 + MER53 DNA DNA 1 186 -3 595 276 89 36 chr6 64934054 64934358 -124345196 + MLT1D LTR MaLR 18 337 -168 214 289 82 0 chr6 64934592 64934689 -124344865 + L2 LINE L2 3168 3272 0 351 0 0 0 chr6 64936917 64936956 -124342598 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1727 173 13 89 chr6 64937481 64937874 -124341680 + MLT1A1 LTR MaLR 1 363 -2 1628 202 71 3 chr6 64937923 64938260 -124341294 + MER89 LTR ERV1 200 559 0 552 230 58 37 chr6 64938369 64938560 -124340994 + MER89-int LTR ERV1 140 334 -6467 395 266 63 35 chr6 64938650 64938793 -124340761 + MER89-int LTR ERV1 452 598 -6203 415 165 253 0 chr6 64938893 64938984 -124340570 - MER21B LTR ERV1 -423 440 327 253 335 24 37 chr6 64939238 64939402 -124340152 - MIR SINE MIR -17 245 84 22 35 0 0 chr6 64939640 64939669 -124339885 + AT_rich Low_complexity Low_complexity 1 29 0 2077 124 10 0 chr6 64939994 64940293 -124339261 - AluSx SINE Alu -9 303 2 1459 212 50 17 chr6 64940299 64940657 -124338897 - L1MB7 LINE L1 -1 6183 5814 3408 37 0 0 chr6 64940663 64941046 -124338508 - L1PA4 LINE L1 -3 6152 5770 44486 45 2 0 chr6 64941098 64947243 -124332311 - L1PA2 LINE L1 0 6155 2 1130 206 16 0 chr6 64947242 64947485 -124332069 - L1MB7 LINE L1 -357 5827 5581 * 608 309 40 5 chr6 64951658 64951859 -124327695 + MIR SINE MIR 42 249 -13 455 245 0 0 chr6 64952209 64952307 -124327247 + MIR SINE MIR 51 148 -114 3206 180 18 88 chr6 64952977 64953766 -124325788 - MSTA-int LTR MaLR -915 736 3 2049 121 104 9 chr6 64953768 64954114 -124325440 - MSTA LTR MaLR 0 428 50 807 97 67 8 chr6 64954101 64954235 -124325319 - MSTA LTR MaLR -286 142 1 * 1448 207 10 3 chr6 64954446 64954745 -124324809 + AluJo SINE Alu 1 301 -11 548 237 46 67 chr6 64954843 64955037 -124324517 + MER20 DNA MER1_type 23 212 -7 227 357 83 0 chr6 64955083 64955167 -124324387 - MIR SINE MIR -85 123 33 218 301 223 10 chr6 64955227 64955330 -124324224 + L2 LINE L2 3116 3240 -32 22 35 0 0 chr6 64955450 64955479 -124324075 + AT_rich Low_complexity Low_complexity 1 29 0 842 102 0 0 chr6 64956126 64956234 -124323320 - AluSq/x SINE Alu -204 108 1 2011 153 3 10 chr6 64956307 64956621 -124322933 - AluJb SINE Alu 0 312 1 457 224 13 0 chr6 64957103 64957259 -124322295 + (TGGA)n Simple_repeat Simple_repeat 3 160 0 268 123 0 88 chr6 64957469 64957526 -124322028 + L2 LINE L2 3262 3313 0 253 216 22 60 chr6 64958016 64958150 -124321404 + GA-rich Low_complexity Low_complexity 1 129 0 363 301 32 16 chr6 64959399 64959468 -124320086 - MIR SINE MIR -75 187 121 1948 122 59 0 chr6 64959468 64959754 -124319800 + AluSx SINE Alu 1 303 -9 2221 106 0 52 chr6 64959754 64960083 -124319471 + AluSq SINE Alu 1 312 -1 363 301 32 16 chr6 64960083 64960135 -124319419 - MIR SINE MIR -140 122 63 372 298 46 26 chr6 64960185 64960336 -124319218 + MIR3 SINE MIR 26 179 -29 685 200 46 23 chr6 64961089 64961264 -124318290 + MER104 DNA MER2_type 2 180 0 2054 148 3 0 chr6 64961449 64961753 -124317801 + AluSx SINE Alu 1 305 -7 1211 229 90 3 chr6 64962000 64962301 -124317253 - MLT1E2 LTR MaLR 0 626 300 586 170 0 27 chr6 64962326 64962438 -124317116 - LTR56 LTR ERV1 -10 435 327 958 151 24 12 chr6 64962572 64962738 -124316816 - MLT1E2 LTR MaLR -337 168 1 318 281 49 0 chr6 64962738 64962820 -124316734 + MLT1L LTR MaLR 204 289 -326 674 267 71 51 chr6 64962849 64963104 -124316450 + MLT1L LTR MaLR 348 607 -8 1407 175 35 0 chr6 64963663 64963891 -124315663 - AluJb SINE Alu -18 294 59 518 262 151 6 chr6 64963999 64964171 -124315383 - MIR SINE MIR -46 216 20 1847 230 21 18 chr6 64964294 64964729 -124314825 + MER63B DNA MER1_type 1 436 0 1435 207 88 6 chr6 64966224 64966576 -124312978 + L1ME3A LINE L1 5790 6170 0 245 302 0 0 chr6 64966709 64966762 -124312792 + MIR SINE MIR 30 82 -126 764 251 163 9 chr6 64966992 64967207 -124312347 + MIR SINE MIR 10 257 -5 274 276 184 0 chr6 64967228 64967326 -124312228 - MIR SINE MIR -108 154 39 210 71 0 0 chr6 64967389 64967417 -124312137 + (TAA)n Simple_repeat Simple_repeat 3 30 0 530 315 35 10 chr6 64967440 64967637 -124311917 - MIR SINE MIR -48 214 13 218 285 115 46 chr6 64968850 64968980 -124310574 - MER5A DNA MER1_type 0 189 51 2269 116 0 3 chr6 64969153 64969454 -124310100 - AluSx SINE Alu -12 300 1 1577 85 0 0 chr6 64969464 64969663 -124309891 - AluSg/x SINE Alu -13 297 99 1156 63 0 28 chr6 64969663 64969805 -124309749 - AluSc SINE Alu -171 138 1 286 165 63 25 chr6 64969860 64969939 -124309615 + L1ME4a LINE L1 6026 6107 -14 21 71 0 0 chr6 64970555 64970597 -124308957 + AT_rich Low_complexity Low_complexity 1 42 0 7691 62 0 1 chr6 64970740 64971860 -124307694 + L1PA8 LINE L1 5043 6172 0 939 234 41 29 chr6 64973786 64974030 -124305524 + MIR SINE MIR 5 251 -11 248 282 43 68 chr6 64974063 64974085 -124305469 - L1MA10 LINE L1 -1 6333 6312 1233 236 23 0 chr6 64974085 64974344 -124305210 - L1ME1 LINE L1 -5 6161 5897 557 217 0 18 chr6 64975788 64975954 -124303600 + C-rich Low_complexity Low_complexity 4 166 0 1856 146 0 0 chr6 64975966 64976234 -124303320 - AluSx SINE Alu -12 300 33 310 220 0 44 chr6 64977423 64977514 -124302040 - MLT1E LTR MaLR 0 567 481 8899 125 11 0 chr6 64977533 64979567 -124299987 - L1PA10 LINE L1 -5 6163 4079 1262 211 59 44 chr6 64979567 64980038 -124299516 - MLT1E LTR MaLR -53 540 1 244 287 180 12 chr6 64980048 64980215 -124299339 - L2 LINE L2 -19 3294 3100 2210 218 85 15 chr6 64980373 64980959 -124298595 + L1MC4a LINE L1 7182 7808 0 310 264 0 11 chr6 64981035 64981126 -124298428 - L2 LINE L2 -516 2798 2709 7856 22 1 0 chr6 64981451 64982352 -124297202 + L1PA2 LINE L1 5254 6155 0 776 227 41 137 chr6 64982531 64982896 -124296658 + MER102b DNA MER1_type 4 333 -8 2671 253 39 49 chr6 64983881 64983900 -124295654 - L2 LINE L2 -1 3312 3294 2426 145 51 5 chr6 64983900 64984314 -124295240 - Tigger2a DNA MER2_type 0 434 2 2671 253 39 49 chr6 64984314 64985418 -124294136 - L2 LINE L2 -19 3294 2188 324 0 0 0 chr6 64985418 64985454 -124294100 + (TC)n Simple_repeat Simple_repeat 1 36 0 1317 156 70 33 chr6 64985454 64985724 -124293830 - AluJo SINE Alu -32 280 1 519 248 222 0 chr6 64985724 64985877 -124293677 - L2 LINE L2 -1120 2194 2008 4979 169 54 42 chr6 64985878 64985975 -124293579 - Tigger6a DNA MER2_type -535 1062 968 2250 81 0 7 chr6 64985975 64986270 -124293284 + AluSg SINE Alu 2 294 -16 4979 169 54 42 chr6 64986270 64987219 -124292335 - Tigger6a DNA MER2_type -629 968 3 2327 186 92 5 chr6 64987241 64987688 -124291866 - MER66B LTR ERV1 0 486 1 1696 187 107 73 chr6 64987711 64988133 -124291421 - L2 LINE L2 -1392 1922 1473 2187 200 52 14 chr6 64988133 64988633 -124290921 - Charlie1b DNA MER1_type 0 523 5 1696 187 107 73 chr6 64988633 64988797 -124290757 - L2 LINE L2 -1841 1473 1316 354 192 61 0 chr6 64988860 64988959 -124290595 - MER104 DNA Tc2 -47 133 29 524 245 0 0 chr6 64989022 64989124 -124290430 - L2 LINE L2 -1997 1317 1216 28 48 0 0 chr6 64989230 64989272 -124290282 + AT_rich Low_complexity Low_complexity 1 42 0 2152 164 51 17 chr6 64989399 64989814 -124289740 + MSTB1 LTR MaLR 4 432 0 185 323 48 0 chr6 64990813 64990875 -124288679 - L2 LINE L2 -2 3311 3247 1153 209 0 30 chr6 64990912 64991142 -124288412 - MER58A DNA MER1_type 0 224 2 369 279 22 59 chr6 64992271 64992407 -124287147 - L1ME4a LINE L1 -1 6120 5990 372 256 166 51 chr6 64992545 64992995 -124286559 - L1MC4a LINE L1 -297 5824 5533 190 278 120 53 chr6 64993145 64993278 -124286276 + MIR3 SINE MIR 6 147 -61 3405 72 87 2 chr6 64995494 64995955 -124283599 - LTR3b LTR ERVK 0 500 1 225 286 36 71 chr6 64995955 64996067 -124283487 + MIR SINE MIR 93 200 -62 1578 212 9 118 chr6 64996460 64996538 -124283016 + MLT2B1 LTR ERVL 5 90 -430 1526 199 0 7 chr6 64996538 64996830 -124282724 - AluJo SINE Alu -22 290 1 1578 212 9 118 chr6 64996830 64997285 -124282269 + MLT2B1 LTR ERVL 90 480 -40 319 263 0 42 chr6 64997298 64997393 -124282161 + L1MC4 LINE L1 6610 6700 -1342 1250 118 0 21 chr6 64997393 64997580 -124281974 + AluSg/x SINE Alu 111 293 -19 459 180 45 0 chr6 64998013 64998102 -124281452 - Tigger5 DNA MER2_type 0 2323 2231 249 211 58 0 chr6 64998107 64998159 -124281395 - Tigger5 DNA MER2_type -2268 55 1 2277 125 23 6 chr6 64998505 64998893 -124280661 - L1PA16 LINE L1 -19 6144 5721 884 157 7 0 chr6 64999492 64999645 -124279909 - FRAM SINE Alu -1 175 22 246 32 0 0 chr6 65000109 65000140 -124279414 + (CA)n Simple_repeat Simple_repeat 2 32 0 210 37 0 0 chr6 65004432 65004459 -124275095 + (T)n Simple_repeat Simple_repeat 1 27 0 278 311 25 50 chr6 65004652 65004771 -124274783 + L2 LINE L2 3189 3304 -9 2103 100 14 3 chr6 65005466 65005757 -124273797 - AluSq SINE Alu -19 294 1 188 323 23 45 chr6 65010106 65010239 -124269315 + L2 LINE L2 2924 3053 -219 224 413 56 19 chr6 65011242 65011402 -124268152 + L2 LINE L2 3107 3272 0 2208 112 0 0 chr6 65012665 65012969 -124266585 + AluSq SINE Alu 1 304 -9 485 344 41 24 chr6 65013685 65013934 -124265620 + MIR SINE MIR 2 250 -12 1404 249 114 22 chr6 65014204 65014832 -124264722 + L1MEd LINE L1 36 758 -5361 1931 120 31 3 chr6 65015017 65015309 -124264245 - AluSq SINE Alu -13 300 1 341 267 155 37 chr6 65017018 65017205 -124262349 + HAL1b LINE L1 1140 1348 0 661 269 123 51 chr6 65017262 65017858 -124261696 - L2 LINE L2 0 3272 2571 670 177 311 0 chr6 65017858 65018022 -124261532 - MER20 DNA MER1_type -3 216 2 661 269 123 51 chr6 65018022 65018142 -124261412 - L2 LINE L2 -701 2571 2461 24 0 0 0 chr6 65018161 65018185 -124261369 + AT_rich Low_complexity Low_complexity 1 24 0 516 245 69 31 chr6 65020905 65021064 -124258490 + MIR SINE MIR 2 166 -96 790 248 85 29 chr6 65021068 65021314 -124258240 + MIR SINE MIR 3 262 0 246 221 116 47 chr6 65021323 65021409 -124258145 + MIR SINE MIR 169 260 -2 372 342 107 26 chr6 65022247 65022519 -124257035 - L2 LINE L2 -468 2846 2553 276 288 12 0 chr6 65023049 65023129 -124256425 - L2 LINE L2 -34 3279 3199 4764 161 21 31 chr6 65023172 65024081 -124255473 + L1MB2 LINE L1 5272 6171 0 284 300 132 29 chr6 65024085 65024358 -124255196 - L2 LINE L2 -414 2900 2600 183 313 0 0 chr6 65024504 65024552 -124255002 - MIR SINE MIR -59 203 156 1767 125 54 24 chr6 65024828 65025123 -124254431 - AluSx SINE Alu -8 304 1 182 253 179 42 chr6 65025181 65025276 -124254278 - L3 LINE CR1 -1210 367 260 2197 52 0 21 chr6 65025325 65025688 -124253866 + AluY SINE Alu 1 357 0 935 225 92 103 chr6 65025914 65026447 -124253107 - Charlie8 DNA MER1_type -1888 529 3 1967 251 24 34 chr6 65027158 65027767 -124251787 + L1ME3 LINE L1 5181 5785 -747 627 253 88 6 chr6 65027769 65027939 -124251615 + MER5A DNA MER1_type 5 188 -1 326 213 156 16 chr6 65027978 65028100 -124251454 + L1ME3 LINE L1 5925 6063 -99 533 207 35 48 chr6 65028140 65028285 -124251269 + L1MC4a LINE L1 5821 5963 -1845 291 260 84 67 chr6 65028911 65029134 -124250420 - MIR SINE MIR -23 239 3 1546 148 101 88 chr6 65029402 65029441 -124250113 + MLT1B LTR MaLR 1 38 -352 2045 102 0 0 chr6 65029441 65029716 -124249838 + AluSg SINE Alu 1 275 -35 1546 148 101 88 chr6 65029716 65030053 -124249501 + MLT1B LTR MaLR 38 382 -8 546 29 0 0 chr6 65030054 65030122 -124249432 + (CA)n Simple_repeat Simple_repeat 2 69 0 1985 118 0 8 chr6 65030339 65030602 -124248952 - AluSx SINE Alu -51 261 1 21 0 0 0 chr6 65030883 65030904 -124248650 + AT_rich Low_complexity Low_complexity 1 21 0 2238 114 7 0 chr6 65031011 65031319 -124248235 + AluSx SINE Alu 1 310 -2 430 182 34 0 chr6 65031694 65031782 -124247772 + L1ME3A LINE L1 6069 6159 -11 397 204 48 39 chr6 65032104 65032207 -124247347 + MIR3 SINE MIR 78 181 -27 2483 69 0 3 chr6 65032800 65033104 -124246450 - AluY SINE Alu -8 303 1 452 238 168 0 chr6 65033348 65033491 -124246063 - MER5A DNA MER1_type -2 187 21 661 164 33 20 chr6 65033939 65034091 -124245463 - MER53 DNA DNA -23 166 13 1938 166 97 49 chr6 65034313 65034758 -124244796 + MLT1C LTR MaLR 1 466 -1 180 0 0 0 chr6 65035034 65035054 -124244500 + (A)n Simple_repeat Simple_repeat 1 20 0 421 297 187 40 chr6 65035493 65035867 -124243687 + L2 LINE L2 2871 3299 -14 634 290 68 12 chr6 65036429 65036767 -124242787 + L1ME4a LINE L1 5568 5924 -197 1438 178 31 34 chr6 65036858 65037184 -124242370 + L1MB4 LINE L1 5844 6168 -12 244 200 67 33 chr6 65037601 65037661 -124241893 - MIR SINE MIR -140 122 61 2137 107 28 0 chr6 65037723 65038013 -124241541 + AluSq SINE Alu 1 298 -15 2248 113 6 0 chr6 65038013 65038324 -124241230 + AluSp SINE Alu 1 313 0 624 210 40 109 chr6 65038452 65038728 -124240826 + Charlie8 DNA MER1_type 4 260 -2157 2155 128 0 3 chr6 65039314 65039612 -124239942 + AluSg SINE Alu 1 297 -13 465 309 20 13 chr6 65040439 65040591 -124238963 + MIR SINE MIR 8 160 -102 239 293 27 0 chr6 65040619 65040694 -124238860 + MER5B DNA MER1_type 100 176 -2 246 248 43 86 chr6 65041614 65041731 -124237823 + L2 LINE L2 3160 3271 -1 741 208 88 0 chr6 65042490 65042649 -124236905 + MER5B DNA MER1_type 1 173 -5 3213 192 27 8 chr6 65042726 65043361 -124236193 + MER82 DNA MER2_type 1 647 -6 232 192 0 68 chr6 65043417 65043490 -124236064 - L1MB8 LINE L1 0 6178 6111 282 310 9 62 chr6 65044051 65044164 -124235390 - MIR SINE MIR -102 160 54 192 125 0 0 chr6 65044827 65044859 -124234695 + (GA)n Simple_repeat Simple_repeat 2 33 0 478 253 0 0 chr6 65045048 65045143 -124234411 + MIR SINE MIR 46 140 -68 537 274 7 7 chr6 65045150 65045285 -124234269 - MIR SINE MIR 0 262 128 24 0 0 0 chr6 65046176 65046200 -124233354 + AT_rich Low_complexity Low_complexity 1 24 0 336 339 117 21 chr6 65050000 65050450 -124229104 - L2 LINE L2 -220 3052 2558 451 209 70 17 chr6 65050761 65050876 -124228678 + L2 LINE L2 3190 3310 -3 232 296 128 15 chr6 65050876 65051079 -124228475 - L2 LINE L2 -1377 1937 1712 203 287 139 0 chr6 65052027 65052128 -124227426 - L2 LINE L2 0 3272 3158 196 341 44 0 chr6 65052197 65052288 -124227266 - MIR SINE MIR -6 256 162 298 239 98 0 chr6 65052294 65052386 -124227168 - MIR SINE MIR 0 262 162 530 311 144 9 chr6 65052395 65052617 -124226937 - MIR SINE MIR -4 258 7 205 241 190 25 chr6 65052750 65052829 -124226725 + L2 LINE L2 3210 3301 -12 334 97 0 32 chr6 65053140 65053202 -124226352 + (TCCC)n Simple_repeat Simple_repeat 1 60 0 622 301 86 15 chr6 65054043 65054369 -124225185 + LTR33 LTR ERVL 170 518 -3 1974 144 0 55 chr6 65054455 65054782 -124224772 - AluSx SINE Alu -3 309 1 254 301 130 20 chr6 65056359 65056505 -124223049 + MIR3 SINE MIR 16 177 -31 239 109 0 43 chr6 65057234 65057280 -124222274 - MER103 DNA DNA -69 97 54 364 304 161 22 chr6 65057559 65057789 -124221765 + MIR SINE MIR 1 262 0 2297 108 16 0 chr6 65058156 65058463 -124221091 + AluSx SINE Alu 1 312 0 913 151 29 10 chr6 65058680 65058926 -124220628 - AluJb SINE Alu -12 300 2 220 297 0 33 chr6 65059127 65059218 -124220336 + C-rich Low_complexity Low_complexity 3 90 0 504 292 60 53 chr6 65059289 65059570 -124219984 - L1ME4a LINE L1 -3 6118 5836 2133 150 0 3 chr6 65060182 65060495 -124219059 - AluSx SINE Alu 0 312 1 2344 117 0 0 chr6 65060559 65060858 -124218696 + AluSx SINE Alu 1 299 -13 1932 109 8 0 chr6 65060859 65061116 -124218438 + AluSq SINE Alu 35 293 -20 489 264 98 43 chr6 65061258 65061493 -124218061 - MIR SINE MIR -6 256 9 189 351 169 13 chr6 65062252 65062329 -124217225 + L2 LINE L2 3098 3186 -86 637 133 33 25 chr6 65062372 65062492 -124217062 + L1MB2 LINE L1 6051 6171 0 412 283 0 0 chr6 65063201 65063300 -124216254 + MIR SINE MIR 47 145 -117 * 522 355 53 0 chr6 65063290 65063518 -124216036 + MIR SINE MIR 7 246 -16 184 336 65 47 chr6 65063568 65063675 -124215879 + L2 LINE L2 2992 3100 -172 419 284 96 46 chr6 65063815 65063872 -124215682 - L1MC4a LINE L1 -8 6113 6060 2330 95 6 19 chr6 65063872 65064189 -124215365 + AluSq SINE Alu 1 313 0 419 284 96 46 chr6 65064189 65064497 -124215057 - L1MC4a LINE L1 -61 6060 5730 2110 158 42 89 chr6 65064783 65065188 -124214366 + L1MB7 LINE L1 5618 5990 -194 1874 151 0 47 chr6 65065188 65065391 -124214163 - AluSx SINE Alu -4 308 124 2561 51 3 16 chr6 65065391 65065702 -124213852 - AluY SINE Alu -4 307 1 1874 151 0 47 chr6 65065702 65065816 -124213738 - AluSx SINE Alu -188 124 6 2110 158 42 89 chr6 65065816 65065985 -124213569 + L1MB7 LINE L1 5990 6165 -19 218 383 187 7 chr6 65066044 65066344 -124213210 - L2 LINE L2 -3 3269 2916 253 275 35 106 chr6 65066422 65066477 -124213077 - L2 LINE L2 -9 3304 3247 1910 85 19 0 chr6 65066477 65066737 -124212817 - L1PA7 LINE L1 -3 6151 5887 253 275 35 106 chr6 65066737 65066823 -124212731 - L2 LINE L2 -66 3247 3173 1486 233 45 45 chr6 65066878 65067351 -124212203 + L1MC4a LINE L1 5574 6049 -1759 2204 64 86 0 chr6 65067351 65067631 -124211923 + AluY SINE Alu 1 304 -7 1486 233 45 45 chr6 65067631 65067741 -124211813 + L1MC4a LINE L1 6048 6157 -1651 274 352 99 23 chr6 65068268 65068703 -124210851 + L2 LINE L2 2804 3271 -1 269 375 47 8 chr6 65070868 65070996 -124208558 + L2 LINE L2 3175 3307 -6 264 296 52 37 chr6 65071964 65072099 -124207455 - MIR3 SINE MIR -65 143 7 424 119 148 69 chr6 65072985 65073026 -124206528 + MLT1A2 LTR MaLR 260 296 -78 2193 122 16 0 chr6 65073026 65073329 -124206225 + AluSx SINE Alu 1 308 -4 424 119 148 69 chr6 65073329 65073388 -124206166 + MLT1A2 LTR MaLR 296 368 -6 259 295 62 54 chr6 65073645 65073757 -124205797 + L2 LINE L2 3199 3311 -2 365 322 105 0 chr6 65073864 65074007 -124205547 + MIR3 SINE MIR 37 194 -14 196 269 58 19 chr6 65075796 65075848 -124203706 - MIR SINE MIR -17 245 192 2205 106 3 0 chr6 65076235 65076518 -124203036 + AluSx SINE Alu 1 284 -28 276 235 25 12 chr6 65079093 65079174 -124200380 - MIR SINE MIR -64 198 117 22 35 0 0 chr6 65080833 65080862 -124198692 + GC_rich Low_complexity Low_complexity 1 29 0 181 106 21 43 chr6 65080911 65080958 -124198596 + (CCCG)n Simple_repeat Simple_repeat 2 47 0 287 195 18 35 chr6 65080978 65081091 -124198463 + C-rich Low_complexity Low_complexity 2 112 0 22 35 0 0 chr6 65081069 65081098 -124198456 + GC_rich Low_complexity Low_complexity 1 29 0 * 253 255 167 10 chr6 65081522 65081624 -124197930 - L2 LINE L2 -14 3299 3182 1525 122 22 13 chr6 65082383 65082613 -124196941 - AluSx SINE Alu -26 286 55 1934 109 51 0 chr6 65082614 65082889 -124196665 - AluSq SINE Alu -24 289 1 1089 167 29 52 chr6 65082892 65083102 -124196452 - Tigger3(Golem) DNA MER2_type -2820 209 5 2747 177 57 17 chr6 65083105 65083636 -124195918 + MLT1F1 LTR MaLR 16 567 0 228 361 82 43 chr6 65083833 65083957 -124195597 - L2 LINE L2 -453 2861 2743 2304 103 3 0 chr6 65083957 65084258 -124195296 - AluSp SINE Alu -10 303 2 228 361 82 43 chr6 65084258 65084388 -124195166 - L2 LINE L2 -571 2743 2597 1899 146 17 7 chr6 65084393 65084687 -124194867 - AluJo SINE Alu -15 297 1 198 319 84 56 chr6 65085204 65085524 -124194030 - L2 LINE L2 -1466 1848 1520 1861 153 58 7 chr6 65085863 65086158 -124193396 - AluSx SINE Alu -2 310 1 1487 249 106 33 chr6 65086653 65087162 -124192392 - MLT1L LTR MaLR -67 548 3 28 29 0 0 chr6 65087445 65087480 -124192074 + AT_rich Low_complexity Low_complexity 1 35 0 318 193 44 97 chr6 65087546 65087660 -124191894 + MER97b DNA MER1_type? 1 108 -945 1380 150 82 0 chr6 65087660 65087893 -124191661 + L1MD3 LINE L1 7735 7986 -9 2195 205 70 30 chr6 65087893 65088100 -124191454 + MER97a DNA MER1_type? 90 287 -607 1682 163 3 48 chr6 65088100 65088413 -124191141 + AluJo SINE Alu 1 299 -13 2195 205 70 30 chr6 65088413 65088746 -124190808 + MER97a DNA MER1_type? 287 652 -242 279 0 0 0 chr6 65088758 65088789 -124190765 + (TG)n Simple_repeat Simple_repeat 2 32 0 777 167 23 15 chr6 65088843 65088975 -124190579 + FLAM_C SINE Alu 1 133 0 1943 128 24 14 chr6 65089053 65089349 -124190205 + AluSx SINE Alu 1 299 -13 215 309 175 24 chr6 65089351 65089477 -124190077 - MIR3 SINE MIR -36 172 28 187 276 62 62 chr6 65089512 65089657 -124189897 - MIR3 SINE MIR -63 145 1 207 0 0 0 chr6 65089894 65089917 -124189637 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1240 113 0 0 chr6 65089918 65090078 -124189476 - AluSg/x SINE Alu -38 274 115 984 254 45 4 chr6 65090310 65090554 -124189000 + MIR SINE MIR 9 262 0 1994 156 16 0 chr6 65090564 65090871 -124188683 - AluJo SINE Alu 0 312 1 213 39 0 0 chr6 65090886 65090912 -124188642 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 273 279 103 92 chr6 65090953 65091215 -124188339 - L2 LINE L2 -83 3189 2925 2028 180 25 8 chr6 65091687 65092053 -124187501 + MER47B DNA MER2_type 47 418 0 2306 104 0 19 chr6 65092225 65092534 -124187020 + AluSx SINE Alu 1 303 -9 216 273 111 20 chr6 65092697 65092796 -124186758 + L2 LINE L2 2279 2386 -928 201 344 64 25 chr6 65093064 65093221 -124186333 - MIR3 SINE MIR -42 166 4 394 323 61 75 chr6 65093266 65093560 -124185994 - L2 LINE L2 -5 3267 2978 250 308 99 27 chr6 65094027 65094248 -124185306 - L2 LINE L2 -924 2390 2154 2319 115 0 3 chr6 65095434 65095748 -124183806 - AluSq SINE Alu 0 313 1 2152 116 0 3 chr6 65095794 65096095 -124183459 - AluSx SINE Alu -12 300 1 203 244 0 0 chr6 65097294 65097339 -124182215 + CT-rich Low_complexity Low_complexity 2 46 0 239 347 156 12 chr6 65097598 65097771 -124181783 - MIR SINE MIR -36 226 29 350 277 64 119 chr6 65097791 65098152 -124181402 + L2 LINE L2 2899 3239 -33 528 223 147 33 chr6 65098174 65098358 -124181196 - MIR SINE MIR -11 251 47 2124 124 3 3 chr6 65099321 65099611 -124179943 + AluSx SINE Alu 1 290 -22 2193 83 4 0 chr6 65099612 65099888 -124179666 + AluSp SINE Alu 37 313 0 242 284 149 0 chr6 65099892 65099966 -124179588 - MIR3 SINE MIR -15 193 109 1551 145 52 31 chr6 65100035 65100325 -124179229 + AluJo SINE Alu 1 296 -16 207 290 65 0 chr6 65103670 65103732 -124175822 + MER5C DNA MER1_type 19 84 -240 2126 134 0 7 chr6 65103798 65104103 -124175451 - AluJb SINE Alu -9 303 1 288 0 0 0 chr6 65104919 65104951 -124174603 + (A)n Simple_repeat Simple_repeat 1 32 0 268 287 23 11 chr6 65105745 65105832 -124173722 - L2 LINE L2 -2 3311 3224 209 255 98 0 chr6 65106633 65106684 -124172870 - MIR SINE MIR -78 130 75 638 241 316 14 chr6 65107745 65108090 -124171464 - L2 LINE L2 -32 3281 2833 764 291 58 17 chr6 65108519 65108760 -124170794 - MIR SINE MIR 0 262 12 2180 112 13 0 chr6 65109414 65109717 -124169837 - AluSp SINE Alu -6 307 1 1664 204 57 76 chr6 65110117 65110593 -124168961 + MLT1C LTR MaLR 1 467 0 516 121 0 0 chr6 65111220 65111311 -124168243 + (TG)n Simple_repeat Simple_repeat 1 91 0 821 208 107 19 chr6 65111538 65111754 -124167800 - MIR SINE MIR -2 260 26 482 219 122 24 chr6 65111763 65111968 -124167586 - L1MC5 LINE L1 -30 7931 7707 970 201 43 63 chr6 65111991 65112340 -124167214 - L1MC5 LINE L1 -202 7759 7418 250 350 121 7 chr6 65112579 65112719 -124166835 - MIR3 SINE MIR -49 159 4 181 305 0 17 chr6 65113051 65113110 -124166444 + MIR3 SINE MIR 99 156 -52 380 232 102 68 chr6 65113169 65113346 -124166208 + MER112 DNA MER1_type 71 253 -7 305 325 58 8 chr6 65113390 65113510 -124166044 - L2 LINE L2 -2 3311 3186 1796 121 36 0 chr6 65114459 65114707 -124164847 - AluSx SINE Alu -55 257 1 2425 76 7 0 chr6 65115329 65115633 -124163921 - AluSq SINE Alu -6 307 2 21 0 0 0 chr6 65115773 65115794 -124163760 + AT_rich Low_complexity Low_complexity 1 21 0 232 287 30 50 chr6 65116209 65116310 -124163244 + MER5A DNA MER1_type 55 153 -36 871 103 9 0 chr6 65116707 65116823 -124162731 + FLAM_C SINE Alu 2 118 -15 575 167 0 8 chr6 65116824 65116944 -124162610 + GA-rich Low_complexity Low_complexity 1 119 0 21 36 0 0 chr6 65119973 65120001 -124159553 + AT_rich Low_complexity Low_complexity 1 28 0 258 296 59 27 chr6 65120100 65120286 -124159268 - L1ME LINE L1 -216 5905 5714 1460 150 69 75 chr6 65120740 65121046 -124158508 - AluJb SINE Alu -8 304 1 186 333 0 0 chr6 65122256 65122307 -124157247 - L2 LINE L2 -1 3271 3221 22 0 0 0 chr6 65122850 65122872 -124156682 + AT_rich Low_complexity Low_complexity 1 22 0 383 330 167 27 chr6 65123421 65124163 -124155391 + L2 LINE L2 1830 2675 -639 512 313 100 44 chr6 65124265 65124900 -124154654 + L2 LINE L2 2456 3222 -91 518 288 88 0 chr6 65125158 65125318 -124154236 + MIR3 SINE MIR 24 197 -11 15639 191 52 13 chr6 65125433 65131953 -124147601 - L1PB1 LINE L1 0 6867 6 213 121 0 0 chr6 65132125 65132158 -124147396 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 228 158 0 53 chr6 65132127 65132184 -124147370 - L1MC4 LINE L1 -1339 6703 6650 912 275 103 39 chr6 65132278 65132638 -124146916 + L2 LINE L2 2126 2508 -806 677 284 60 11 chr6 65133154 65133337 -124146217 + MIR3 SINE MIR 14 205 -3 2072 139 0 0 chr6 65133880 65134181 -124145373 - AluSx SINE Alu -10 302 2 267 190 17 0 chr6 65134665 65134723 -124144831 - MER58 DNA MER1_type 0 2420 2362 1354 182 29 113 chr6 65134725 65135142 -124144412 - MLT1B LTR MaLR -1 389 8 806 218 113 8 chr6 65135148 65135387 -124144167 - MER58 DNA MER1_type -68 273 10 259 246 0 16 chr6 65136630 65136691 -124142863 - L2 LINE L2 -5 3308 3249 632 277 62 5 chr6 65136774 65136998 -124142556 - L2 LINE L2 -91 3222 2986 2272 172 10 0 chr6 65137310 65137716 -124141838 + MER82 DNA MER2_type 2 411 -242 249 33 0 0 chr6 65137720 65137750 -124141804 + (TATATG)n Simple_repeat Simple_repeat 4 33 0 6486 163 22 3 chr6 65137750 65139533 -124140021 - L1P4 LINE L1 -388 5780 3961 17579 49 0 4 chr6 65139539 65142511 -124137043 - L1PA5 LINE L1 -2 6152 3179 24 0 0 0 chr6 65142518 65142542 -124137012 + AT_rich Low_complexity Low_complexity 1 24 0 1716 56 0 0 chr6 65142542 65142756 -124136798 - L1PA2 LINE L1 -3 6152 5939 22539 80 8 3 chr6 65142756 65145934 -124133620 - L1PA5 LINE L1 -2951 3195 2 10902 201 11 12 chr6 65145934 65146342 -124133212 - L1P4 LINE L1 -2173 3973 3566 2497 64 7 0 chr6 65146342 65146638 -124132916 + AluY SINE Alu 1 298 -13 10902 201 11 12 chr6 65146638 65148018 -124131536 - L1P4 LINE L1 -2580 3566 2184 2099 123 0 3 chr6 65148018 65148340 -124131214 - AluSx SINE Alu 0 321 1 10902 201 11 12 chr6 65148340 65149006 -124130548 - L1P4 LINE L1 -3962 2184 1519 1599 212 7 3 chr6 65149536 65149842 -124129712 - AluJo SINE Alu -5 307 1 2009 149 7 0 chr6 65152050 65152346 -124127208 + AluJb SINE Alu 1 298 -14 2372 103 0 0 chr6 65152613 65152915 -124126639 + AluY SINE Alu 1 302 -9 383 294 58 58 chr6 65153070 65153345 -124126209 + L1ME2 LINE L1 5748 6022 -142 22 0 0 0 chr6 65153384 65153406 -124126148 + AT_rich Low_complexity Low_complexity 1 22 0 2085 125 0 3 chr6 65153872 65154169 -124125385 + AluSx SINE Alu 1 296 -16 905 197 13 44 chr6 65155242 65155470 -124124084 + L1ME1 LINE L1 4786 5006 -1140 225 188 0 0 chr6 65155470 65155518 -124124036 + Alu SINE Alu 255 302 0 4331 127 116 8 chr6 65155518 65156468 -124123086 + L1PA16 LINE L1 5110 6162 -4 2787 242 51 17 chr6 65156480 65156892 -124122662 + L1ME1 LINE L1 5159 5556 -610 2354 60 0 7 chr6 65156892 65157216 -124122338 - AluY SINE Alu 0 322 1 2787 242 51 17 chr6 65157216 65157779 -124121775 + L1ME1 LINE L1 5556 6161 -5 446 260 126 24 chr6 65157792 65158163 -124121391 + L1ME LINE L1 1669 2075 -4465 4198 104 21 2 chr6 65158315 65158937 -124120617 - L1PA13 LINE L1 -2 6161 5528 338 310 33 16 chr6 65159019 65159322 -124120232 + L1ME LINE L1 2711 3018 -3522 968 269 88 50 chr6 65159363 65159844 -124119710 + L1ME LINE L1 3193 3654 -2886 2201 114 7 7 chr6 65159844 65160142 -124119412 + AluSx SINE Alu 1 298 -14 968 269 88 50 chr6 65160142 65160257 -124119297 + L1ME LINE L1 3654 3763 -2777 2088 82 52 36 chr6 65160257 65160562 -124118992 - AluY SINE Alu -1 310 1 968 269 88 50 chr6 65160562 65160908 -124118646 + L1ME LINE L1 3763 4172 -2368 467 344 5 15 chr6 65161562 65161757 -124117797 + L2 LINE L2 3121 3313 0 336 301 84 28 chr6 65162446 65162695 -124116859 + L1ME LINE L1 5711 5973 -542 29 78 0 0 chr6 65162700 65162764 -124116790 + AT_rich Low_complexity Low_complexity 1 64 0 2013 137 3 14 chr6 65162766 65163058 -124116496 + AluSx SINE Alu 1 289 -23 246 74 56 0 chr6 65163058 65163112 -124116442 + (TA)n Simple_repeat Simple_repeat 2 58 0 501 376 53 51 chr6 65163497 65163930 -124115624 + L2 LINE L2 2830 3263 -9 2178 107 7 0 chr6 65164422 65164720 -124114834 - AluSx SINE Alu -12 300 1 22 35 0 0 chr6 65164919 65164948 -124114606 + AT_rich Low_complexity Low_complexity 1 29 0 323 321 36 24 chr6 65167743 65167911 -124111643 - MIR SINE MIR -73 189 20 183 215 28 140 chr6 65167944 65168051 -124111503 + L3 LINE CR1 190 284 -1293 218 167 0 0 chr6 65168231 65168267 -124111287 + (TG)n Simple_repeat Simple_repeat 2 37 0 308 304 75 63 chr6 65168561 65168814 -124110740 + L1MDa LINE L1 963 1218 -5312 2176 124 0 7 chr6 65168824 65169130 -124110424 + AluSx SINE Alu 1 304 -8 34 0 0 0 chr6 65169134 65169168 -124110386 + AT_rich Low_complexity Low_complexity 1 34 0 231 132 19 0 chr6 65169342 65169395 -124110159 + L1PA15 LINE L1 6112 6165 0 727 255 195 8 chr6 65169407 65169807 -124109747 + L1MDa LINE L1 4346 4820 -1720 1470 241 143 54 chr6 65170117 65170739 -124108815 + L1MDa LINE L1 4859 5424 -1140 1813 163 0 3 chr6 65170739 65171022 -124108532 + AluSx SINE Alu 1 282 -30 180 0 0 0 chr6 65171023 65171043 -124108511 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 1470 241 143 54 chr6 65171043 65171281 -124108273 + L1MDa LINE L1 5424 5639 -925 1462 173 58 18 chr6 65171281 65171558 -124107996 + AluJo SINE Alu 1 288 -24 1470 241 143 54 chr6 65171558 65172231 -124107323 + L1MDa LINE L1 5639 6518 -46 890 293 99 18 chr6 65172963 65173355 -124106199 - L2 LINE L2 0 3313 2890 531 201 126 75 chr6 65173365 65173539 -124106015 + MER97a DNA MER1_type? 1 183 -711 819 220 14 10 chr6 65173539 65173748 -124105806 + L1MC4a LINE L1 7021 7230 -578 1059 215 9 0 chr6 65173855 65174069 -124105485 - MLT1C LTR MaLR -8 459 244 484 299 241 0 chr6 65174518 65174862 -124104692 + L2 LINE L2 1739 2165 -1149 1872 209 62 5 chr6 65174869 65175275 -124104279 + MLT1F1 LTR MaLR 139 567 0 281 234 93 42 chr6 65175396 65175522 -124104032 + L2 LINE L2 3142 3313 0 378 239 128 66 chr6 65176264 65176473 -124103081 + LTR33 LTR ERVL 218 445 -76 1979 126 70 17 chr6 65176473 65176829 -124102725 + THE1C LTR MaLR 1 375 0 378 239 128 66 chr6 65176829 65176862 -124102692 + LTR33 LTR ERVL 445 475 -46 1909 163 7 0 chr6 65176862 65177169 -124102385 - AluSx SINE Alu -3 309 1 28 0 0 0 chr6 65177382 65177410 -124102144 + AT_rich Low_complexity Low_complexity 1 28 0 1564 169 99 38 chr6 65178117 65178461 -124101093 + MER93b LTR ERV1 9 373 0 186 337 72 30 chr6 65178591 65178757 -124100797 + L2 LINE L2 2741 2913 -401 497 170 157 57 chr6 65178982 65179141 -124100413 + MLT1C LTR MaLR 2 176 -291 2639 166 62 0 chr6 65179165 65179629 -124099925 - LTR42 LTR ERVL -2 493 1 4350 92 18 24 chr6 65179979 65180146 -124099408 + HUERS-P3b LTR ERV1 4009 4175 -3243 2200 75 0 0 chr6 65180146 65180414 -124099140 + AluY SINE Alu 39 306 -5 4350 92 18 24 chr6 65180414 65180916 -124098638 + HUERS-P3b LTR ERV1 4175 6694 -724 3047 109 0 22 chr6 65180913 65181361 -124098193 + HUERS-P3b LTR ERV1 6973 7410 -8 * 3548 105 35 6 chr6 65181363 65181907 -124097647 + LTR9B LTR ERV1 1 560 -84 270 0 0 0 chr6 65181907 65181937 -124097617 + (A)n Simple_repeat Simple_repeat 1 30 0 318 28 0 0 chr6 65183284 65183320 -124096234 - U2 snRNA snRNA -152 36 1 309 319 66 33 chr6 65183609 65183913 -124095641 - LTR57-int LTR ERVL -1267 4076 3763 1788 146 25 41 chr6 65184405 65184720 -124094834 - MSTB LTR MaLR -9 417 108 1916 192 28 101 chr6 65184723 65185300 -124094254 + MLT2B3 LTR ERVL 20 554 0 780 145 0 0 chr6 65185300 65185417 -124094137 - MSTB LTR MaLR -309 117 1 981 320 75 46 chr6 65185894 65186823 -124092731 - LTR57-int LTR ERVL -3094 2953 1998 947 151 52 58 chr6 65186850 65187091 -124092463 + MLT2A2 LTR ERVL 293 453 0 2043 127 0 64 chr6 65187462 65187792 -124091762 - AluSx SINE Alu -3 309 1 2742 140 28 5 chr6 65188004 65188432 -124091122 - LTR42 LTR ERVL -51 444 7 1225 220 57 10 chr6 65188451 65188751 -124090803 + MLT1C LTR MaLR 145 458 -9 21 36 0 0 chr6 65190933 65190961 -124088593 + AT_rich Low_complexity Low_complexity 1 28 0 813 217 55 18 chr6 65190991 65191208 -124088346 + AluJo SINE Alu 86 310 -2 2128 222 20 26 chr6 65192187 65192728 -124086826 - L1MB7 LINE L1 -68 6116 5579 606 282 14 50 chr6 65195067 65195287 -124084267 + MIR SINE MIR 49 260 -2 1362 203 69 7 chr6 65195534 65195825 -124083729 + MER65A LTR ERV1 137 445 0 908 213 5 0 chr6 65196436 65196624 -124082930 - MER53 DNA DNA 0 189 1 260 260 91 0 chr6 65196640 65196717 -124082837 + L2 LINE L2 2886 2969 -303 309 262 78 10 chr6 65196914 65197017 -124082537 - L1MC5 LINE L1 -46 7915 7806 1103 276 120 16 chr6 65197054 65197488 -124082066 + MLT1D LTR MaLR 27 505 0 533 205 40 107 chr6 65197493 65197791 -124081763 - L1MC5 LINE L1 -160 7801 7524 3334 200 25 83 chr6 65198033 65199061 -124080493 - LTR5 LTR ERVK 0 969 1 226 250 0 0 chr6 65202055 65202107 -124077447 + L1MC4 LINE L1 7836 7887 -155 2206 221 28 31 chr6 65203449 65204055 -124075499 - L1MB7 LINE L1 0 6184 5581 1881 169 14 0 chr6 65204972 65205268 -124074286 - AluSx SINE Alu -12 300 1 464 216 80 16 chr6 65206780 65206905 -124072649 + L2 LINE L2 3137 3269 -3 887 257 51 28 chr6 65207008 65207440 -124072114 - L1MC5 LINE L1 -30 7931 7490 249 83 0 0 chr6 65207736 65207772 -124071782 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 215 313 104 18 chr6 65208039 65208202 -124071352 - MIR SINE MIR -3 259 83 266 281 175 9 chr6 65208627 65208741 -124070813 - MIR SINE MIR -74 188 56 492 222 133 11 chr6 65208782 65208962 -124070592 - MER112 DNA MER1_type 0 260 59 2145 138 3 0 chr6 65209329 65209641 -124069913 - AluSq SINE Alu 0 313 1 251 313 129 7 chr6 65210254 65210401 -124069153 - MIR SINE MIR -85 177 13 348 227 62 0 chr6 65210830 65210927 -124068627 + MIR SINE MIR 95 197 -65 413 236 35 23 chr6 65211035 65211209 -124068345 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 624 194 21 86 chr6 65211457 65211587 -124067967 + MER20 DNA MER1_type 4 120 -99 6069 127 21 21 chr6 65211587 65212556 -124066998 + LTR5 LTR ERVK 1 969 0 624 194 21 86 chr6 65212556 65212611 -124066943 + MER20 DNA MER1_type 120 177 -42 241 292 97 0 chr6 65212681 65212753 -124066801 - MIR SINE MIR -91 117 39 889 186 57 6 chr6 65213623 65213800 -124065754 + MER53 DNA DNA 1 186 -3 608 273 89 36 chr6 65213941 65214245 -124065309 + MLT1D LTR MaLR 18 337 -168 206 324 14 0 chr6 65214479 65214553 -124065001 + L2 LINE L2 3168 3242 -30 216 0 0 0 chr6 65216802 65216826 -124062728 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1727 173 13 89 chr6 65217351 65217744 -124061810 + MLT1A1 LTR MaLR 1 363 -2 1610 205 71 3 chr6 65217793 65218130 -124061424 + MER89 LTR ERV1 200 559 0 570 225 58 37 chr6 65218239 65218430 -124061124 + MER89-int LTR ERV1 140 334 -6467 395 266 63 35 chr6 65218520 65218663 -124060891 + MER89-int LTR ERV1 452 598 -6203 415 165 253 0 chr6 65218763 65218854 -124060700 - MER21B LTR ERV1 -423 440 327 253 335 24 37 chr6 65219108 65219272 -124060282 - MIR SINE MIR -17 245 84 22 35 0 0 chr6 65219510 65219539 -124060015 + AT_rich Low_complexity Low_complexity 1 29 0 2061 127 10 0 chr6 65219865 65220164 -124059390 - AluSx SINE Alu -9 303 2 1459 212 50 17 chr6 65220170 65220528 -124059026 - L1MB7 LINE L1 -1 6183 5814 3385 39 0 0 chr6 65220534 65220917 -124058637 - L1PA4 LINE L1 -3 6152 5770 44468 45 1 0 chr6 65220968 65227114 -124052440 - L1PA2 LINE L1 0 6155 2 1111 210 16 0 chr6 65227113 65227356 -124052198 - L1MB7 LINE L1 -357 5827 5581 * 623 304 40 5 chr6 65231528 65231729 -124047825 + MIR SINE MIR 42 249 -13 455 245 0 0 chr6 65232079 65232177 -124047377 + MIR SINE MIR 51 148 -114 3206 181 18 86 chr6 65232847 65233635 -124045919 - MSTA-int LTR MaLR -915 736 3 2056 116 107 12 chr6 65233637 65233983 -124045571 - MSTA LTR MaLR 0 428 50 807 97 67 8 chr6 65233970 65234104 -124045450 - MSTA LTR MaLR -286 142 1 * 1463 207 10 3 chr6 65234315 65234614 -124044940 + AluJo SINE Alu 1 301 -11 568 232 46 67 chr6 65234712 65234906 -124044648 + MER20 DNA MER1_type 23 212 -7 227 357 83 0 chr6 65234952 65235036 -124044518 - MIR SINE MIR -85 123 33 22 35 0 0 chr6 65235319 65235348 -124044206 + AT_rich Low_complexity Low_complexity 1 29 0 5922 95 97 83 chr6 65236070 65237576 -124041978 + pTR5 LTR ERV1 741 2438 0 1808 191 72 12 chr6 65237683 65238101 -124041453 + MER65A LTR ERV1 1 443 -2 905 201 5 5 chr6 65238723 65238912 -124040642 - MER53 DNA DNA 0 189 1 212 278 0 0 chr6 65238950 65239004 -124040550 + L2 LINE L2 2915 2968 -304 190 284 137 29 chr6 65239071 65239173 -124040381 + L2 LINE L2 3134 3246 -26 312 218 81 65 chr6 65239184 65239308 -124040246 - L1MC5 LINE L1 -34 7927 7802 1027 296 32 32 chr6 65239313 65239775 -124039779 + MLT1C LTR MaLR 6 467 0 523 198 40 107 chr6 65239780 65240078 -124039476 - L1MC5 LINE L1 -160 7801 7524 23 33 0 0 chr6 65240082 65240112 -124039442 + AT_rich Low_complexity Low_complexity 1 30 0 201 380 13 0 chr6 65240574 65240653 -124038901 - L2 LINE L2 -598 2716 2637 2194 223 25 22 chr6 65244671 65245273 -124034281 - L1MB7 LINE L1 0 6184 5581 372 227 0 0 chr6 65246188 65246276 -124033278 + (TA)n Simple_repeat Simple_repeat 1 88 0 1807 176 20 0 chr6 65246276 65246572 -124032982 - AluSx SINE Alu -10 302 1 421 207 74 22 chr6 65248069 65248204 -124031350 + L2 LINE L2 3169 3310 -3 856 251 28 37 chr6 65248307 65248737 -124030817 - L1MC5 LINE L1 -30 7931 7506 234 62 0 0 chr6 65249031 65249063 -124030491 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 185 325 84 18 chr6 65249329 65249495 -124030059 - MIR SINE MIR -3 259 83 243 293 171 8 chr6 65249916 65250039 -124029515 - MIR SINE MIR -71 191 49 411 221 52 29 chr6 65250108 65250244 -124029310 - MER112 DNA MER1_type -57 203 65 21 0 0 0 chr6 65250606 65250627 -124028927 + AT_rich Low_complexity Low_complexity 1 21 0 2013 126 3 0 chr6 65250627 65250913 -124028641 - AluSq SINE Alu -26 287 1 248 330 54 0 chr6 65251513 65251625 -124027929 - MIR SINE MIR -74 188 71 302 281 53 0 chr6 65252106 65252220 -124027334 + MIR SINE MIR 95 214 -48 431 230 35 23 chr6 65252316 65252490 -124027064 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 754 189 31 63 chr6 65252738 65252929 -124026625 + MER20 DNA MER1_type 4 188 -31 225 292 97 0 chr6 65252993 65253065 -124026489 - MIR SINE MIR -91 117 39 895 169 57 6 chr6 65253939 65254116 -124025438 + MER53 DNA DNA 1 186 -3 641 263 95 43 chr6 65254257 65254561 -124024993 + MLT1D LTR MaLR 18 337 -168 378 0 0 0 chr6 65257115 65257157 -124022397 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1549 186 10 87 chr6 65257683 65258076 -124021478 + MLT1A1 LTR MaLR 1 363 -2 1410 221 94 3 chr6 65258125 65258455 -124021099 + MER89 LTR ERV1 200 559 0 571 247 37 26 chr6 65258567 65258757 -124020797 + MER89-int LTR ERV1 143 334 -6467 269 240 70 70 chr6 65258861 65258990 -124020564 + MER89-int LTR ERV1 470 598 -6203 691 159 9 0 chr6 65259090 65259203 -124020351 - MER21B LTR ERV1 -423 440 327 195 341 24 37 chr6 65259455 65259619 -124019935 - MIR SINE MIR -17 245 84 22 35 0 0 chr6 65259832 65259861 -124019693 + AT_rich Low_complexity Low_complexity 1 29 0 2192 120 0 3 chr6 65260210 65260519 -124019035 - AluSc SINE Alu -1 308 1 2222 122 0 0 chr6 65260524 65260819 -124018735 - AluSx SINE Alu -16 296 2 2611 212 34 7 chr6 65260825 65261411 -124018143 - L1MB7 LINE L1 -2 6182 5581 610 282 42 14 chr6 65263839 65264052 -124015502 + MIR SINE MIR 42 260 -2 420 245 0 0 chr6 65264391 65264489 -124015065 + MIR SINE MIR 51 148 -114 459 234 7 35 chr6 65265535 65265676 -124013878 + L2 LINE L2 3173 3309 -4 2578 152 42 73 chr6 65265903 65266495 -124013059 - MER4B LTR ERV1 -36 574 1 346 280 16 0 chr6 65266504 65266629 -124012925 - L1MC5 LINE L1 -136 7825 7699 300 282 161 8 chr6 65267347 65267471 -124012083 - MIR SINE MIR -71 191 49 353 224 69 0 chr6 65267562 65267678 -124011876 - MER112 DNA MER1_type -77 183 60 293 267 113 26 chr6 65268612 65268774 -124010780 - MIR3 SINE MIR -69 139 1 203 297 69 0 chr6 65269195 65269296 -124010258 + MIR SINE MIR 112 219 -43 2167 149 91 8 chr6 65270449 65270844 -124008710 - MSTA LTR MaLR 0 428 1 8087 187 16 49 chr6 65270860 65272531 -124007023 - MSTA-int LTR MaLR -34 1617 3 2320 131 88 10 chr6 65272533 65272930 -124006624 - MSTA LTR MaLR 0 428 1 1450 217 7 3 chr6 65273142 65273442 -124006112 + AluJo SINE Alu 1 301 -11 578 216 52 72 chr6 65273540 65273734 -124005820 + MER20 DNA MER1_type 23 212 -7 199 313 138 0 chr6 65273780 65273860 -124005694 - MIR SINE MIR -85 123 33 183 311 223 10 chr6 65273920 65274023 -124005531 + L2 LINE L2 3116 3240 -32 22 35 0 0 chr6 65274140 65274169 -124005385 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr6 65274456 65274480 -124005074 + (TCTCCC)n Simple_repeat Simple_repeat 3 26 0 7660 82 12 194 chr6 65274483 65276105 -124003449 + SVA Other Other 60 1386 0 1486 188 41 0 chr6 65276392 65276685 -124002869 + MER65A LTR ERV1 139 443 -2 756 243 5 5 chr6 65277302 65277491 -124002063 - MER53 DNA DNA 0 189 1 229 267 78 22 chr6 65277507 65277597 -124001957 + L2 LINE L2 2886 2980 -292 295 248 66 50 chr6 65277767 65277888 -124001666 - L1MC5 LINE L1 -34 7927 7805 488 213 40 74 chr6 65277896 65278067 -124001487 + MLT1C LTR MaLR 6 177 -328 3963 143 93 47 chr6 65278068 65279471 -124000083 - pTR5 LTR ERV1 0 2606 1524 694 276 42 8 chr6 65279492 65279731 -123999823 + MLT1C LTR MaLR 187 433 -34 394 221 44 99 chr6 65279777 65280071 -123999483 - L1MC5 LINE L1 -160 7801 7524 238 96 58 58 chr6 65283312 65283364 -123996190 + L1MC4 LINE L1 7836 7887 -155 2174 232 29 30 chr6 65284717 65285371 -123994183 - L1MB7 LINE L1 0 6184 5535 2237 132 0 0 chr6 65286238 65286542 -123993012 - AluSx SINE Alu -8 304 1 603 285 34 19 chr6 65287986 65288193 -123991361 + MIR SINE MIR 49 258 -4 388 272 10 0 chr6 65288480 65288583 -123990971 + MIR SINE MIR 51 154 -108 535 188 29 29 chr6 65289618 65289756 -123989798 + L2 LINE L2 3173 3310 -3 807 260 65 18 chr6 65289879 65290279 -123989275 - L1MC5 LINE L1 -51 7910 7492 187 357 77 11 chr6 65290855 65291037 -123988517 - MIR SINE MIR -3 259 66 368 309 180 11 chr6 65291387 65291565 -123987989 - MIR SINE MIR -6 256 49 454 194 65 29 chr6 65291634 65291773 -123987781 - MER112 DNA MER1_type -57 203 60 1943 144 7 3 chr6 65292133 65292431 -123987123 - AluSq SINE Alu -11 302 4 6344 57 8 0 chr6 65292487 65293272 -123986282 - L1PA7 LINE L1 -2 6152 5362 282 255 59 20 chr6 65294376 65294478 -123985076 + MIR SINE MIR 95 200 -62 434 233 34 28 chr6 65294586 65294762 -123984792 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 694 216 20 59 chr6 65295007 65295211 -123984343 + MER20 DNA MER1_type 4 199 -20 279 250 97 0 chr6 65295262 65295334 -123984220 - MIR SINE MIR -91 117 39 902 206 5 5 chr6 65296212 65296401 -123983153 - MER53 DNA DNA 0 189 1 636 270 92 40 chr6 65296530 65296834 -123982720 + MLT1D LTR MaLR 18 337 -168 203 308 29 29 chr6 65300196 65300300 -123979254 - MIR SINE MIR -3 259 156 24421 82 8 2 chr6 65300775 65304898 -123974656 - L1PA7 LINE L1 -3 6466 2324 12806 112 4 3 chr6 65304871 65306750 -123972804 - L1PA7 LINE L1 -4587 1864 1 * 2373 227 20 25 chr6 65306759 65307367 -123972187 - L1MB7 LINE L1 0 6184 5580 1859 164 7 0 chr6 65308280 65308585 -123970969 - AluSx SINE Alu 0 307 1 2205 117 0 0 chr6 65309340 65309638 -123969916 - AluSg SINE Alu -12 298 1 488 291 40 20 chr6 65310348 65310547 -123969007 + MIR SINE MIR 49 251 -11 44271 45 3 2 chr6 65310555 65312385 -123967169 + L1PA3 LINE L1 1 1828 -4327 2610 34 0 0 chr6 65312385 65312683 -123966871 - AluYa5 SINE Alu -13 298 1 44271 45 3 2 chr6 65312683 65317001 -123962553 + L1PA3 LINE L1 1828 6155 0 3280 50 0 3 chr6 65317013 65317396 -123962158 + L1PA4 LINE L1 5770 6151 -4 900 113 138 44 chr6 65317411 65317614 -123961940 + Charlie5 DNA MER1_type 2352 2573 -39 225 0 0 0 chr6 65317880 65317905 -123961649 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 510 267 123 11 chr6 65318263 65318450 -123961104 + MIR SINE MIR 51 258 -4 562 192 89 96 chr6 65319181 65319393 -123960161 - L1MC5 LINE L1 -159 7802 7591 2199 120 3 0 chr6 65319393 65319692 -123959862 - AluSp SINE Alu -13 300 1 562 192 89 96 chr6 65319692 65319792 -123959762 - L1MC5 LINE L1 -370 7591 7492 300 27 0 0 chr6 65320088 65320125 -123959429 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 207 359 83 11 chr6 65320399 65320580 -123958974 - MIR SINE MIR -3 259 66 304 228 189 55 chr6 65320961 65321088 -123958466 - MIR SINE MIR -70 192 49 415 200 27 0 chr6 65321187 65321297 -123958257 - MER112 DNA MER1_type -88 172 60 295 248 104 38 chr6 65322232 65322377 -123957177 - MIR3 SINE MIR -54 154 22 216 0 0 0 chr6 65324557 65324581 -123954973 + (A)n Simple_repeat Simple_repeat 1 24 0 1812 203 9 9 chr6 65325113 65325462 -123954092 + MLT1A1 LTR MaLR 1 349 -16 1646 216 56 3 chr6 65325523 65325865 -123953689 + MER89 LTR ERV1 200 559 0 732 260 106 68 chr6 65325974 65326416 -123953138 + MER89-int LTR ERV1 140 598 -6203 612 179 8 34 chr6 65326516 65326633 -123952921 - MER21B LTR ERV1 -423 440 327 253 287 49 73 chr6 65326898 65327062 -123952492 - MIR SINE MIR -19 243 84 24 32 0 0 chr6 65327300 65327331 -123952223 + AT_rich Low_complexity Low_complexity 1 31 0 1964 212 44 7 chr6 65327429 65327886 -123951668 - L1MB7 LINE L1 -131 6053 5580 448 298 22 89 chr6 65330315 65330454 -123949100 + MIR SINE MIR 42 162 -100 2390 103 0 0 chr6 65330454 65330766 -123948788 + AluSx SINE Alu 1 312 0 448 298 22 89 chr6 65330766 65330851 -123948703 + MIR SINE MIR 162 251 -11 464 235 0 0 chr6 65331190 65331288 -123948266 + MIR SINE MIR 51 148 -114 207 0 0 0 chr6 65331902 65331925 -123947629 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 536 212 7 36 chr6 65332374 65332511 -123947043 + L2 LINE L2 3173 3305 -8 2470 129 33 68 chr6 65332685 65332976 -123946578 - MER4B LTR ERV1 -7 772 472 3587 196 20 66 chr6 65332976 65333992 -123945562 + LTR5 LTR ERVK 1 969 0 2470 129 33 68 chr6 65333992 65334343 -123945211 - MER4B LTR ERV1 -307 472 1 835 246 46 30 chr6 65334352 65334681 -123944873 - L1MC5 LINE L1 -136 7825 7492 204 135 0 0 chr6 65334983 65335020 -123944534 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 215 282 25 112 chr6 65335287 65335401 -123944153 - MIR SINE MIR -3 259 169 2245 94 17 0 chr6 65335401 65335699 -123943855 - AluY SINE Alu -8 303 1 215 282 25 112 chr6 65335699 65335790 -123943764 - MIR SINE MIR -93 169 72 2252 144 29 27 chr6 65335956 65336330 -123943224 + THE1C LTR MaLR 1 375 0 407 244 163 0 chr6 65336576 65336699 -123942855 - MIR SINE MIR -71 191 49 2158 117 3 10 chr6 65336724 65337031 -123942523 + AluSx SINE Alu 6 310 -2 397 220 28 0 chr6 65337111 65337220 -123942334 - MER112 DNA MER1_type -89 171 60 195 228 0 18 chr6 65338183 65338240 -123941314 - MIR SINE MIR -69 139 84 1987 157 0 0 chr6 65338754 65339054 -123940500 + AluSx SINE Alu 1 300 -12 1890 145 40 40 chr6 65339108 65339481 -123940073 + THE1C LTR MaLR 1 373 -2 261 0 0 0 chr6 65339598 65339627 -123939927 + (TC)n Simple_repeat Simple_repeat 2 30 0 2609 121 3 3 chr6 65339763 65340127 -123939427 + THE1B LTR MaLR 1 364 0 1865 155 6 25 chr6 65340686 65341042 -123938512 + AluJb SINE Alu 1 350 0 662 262 48 10 chr6 65341655 65341861 -123937693 + MER20 DNA MER1_type 2 215 -4 269 309 83 0 chr6 65341899 65341983 -123937571 - MIR SINE MIR -85 123 33 26 64 0 0 chr6 65342075 65342122 -123937432 + AT_rich Low_complexity Low_complexity 1 47 0 1850 208 49 7 chr6 65342948 65343375 -123936179 + MER65A LTR ERV1 1 445 0 851 214 5 0 chr6 65343994 65344181 -123935373 - MER53 DNA DNA 0 189 2 211 226 0 48 chr6 65344213 65344275 -123935279 + L2 LINE L2 2911 2969 -303 241 276 82 10 chr6 65344352 65344450 -123935104 + L2 LINE L2 3142 3246 -26 253 242 0 50 chr6 65344464 65344563 -123934991 - L1MC5 LINE L1 -36 7925 7832 700 262 120 33 chr6 65344590 65345015 -123934539 + MLT1D LTR MaLR 6 467 0 415 226 30 48 chr6 65345020 65345188 -123934366 - L1MC5 LINE L1 -164 7797 7633 1486 150 69 98 chr6 65348409 65348788 -123930766 - LTR10A LTR ERV1 -61 548 181 285 239 162 81 chr6 65348801 65349023 -123930531 - LTR10A LTR ERV1 -356 253 14 207 299 11 96 chr6 65349913 65349978 -123929576 - MIR SINE MIR -17 245 176 2020 142 10 3 chr6 65349978 65350289 -123929265 - AluSq SINE Alu 0 313 1 207 299 11 96 chr6 65350289 65350400 -123929154 - MIR SINE MIR -86 176 84 2494 224 20 17 chr6 65350828 65351431 -123928123 - L1MB7 LINE L1 0 6184 5580 2430 49 7 33 chr6 65353033 65353337 -123926217 + AluY SINE Alu 1 296 -15 1818 175 3 13 chr6 65353702 65354017 -123925537 - AluJo SINE Alu 0 312 1 325 244 89 0 chr6 65354642 65354732 -123924822 + L2 LINE L2 3196 3293 -20 758 261 48 36 chr6 65354864 65355282 -123924272 - L1MC5 LINE L1 -51 7910 7488 279 54 0 0 chr6 65355587 65355624 -123923930 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 319 312 117 19 chr6 65355951 65356105 -123923449 - MIR3 SINE MIR -24 184 16 7770 25 0 11 chr6 65356151 65357715 -123921839 + L1PA3 LINE L1 4601 6155 0 1509 205 37 7 chr6 65357967 65358265 -123921289 + AluJb SINE Alu 1 307 -5 21 0 0 0 chr6 65358388 65358409 -123921145 + AT_rich Low_complexity Low_complexity 1 21 0 349 231 8 8 chr6 65358641 65358758 -123920796 + GA-rich Low_complexity Low_complexity 1 117 0 270 250 58 33 chr6 65360064 65360184 -123919370 + L2 LINE L2 3133 3255 -17 7804 192 40 71 chr6 65360381 65362465 -123917089 - L1MC4a LINE L1 -27 7781 5768 2003 138 0 26 chr6 65362465 65362776 -123916778 - AluSg SINE Alu -7 303 1 7804 192 40 71 chr6 65362776 65362894 -123916660 - L1MC4a LINE L1 -2040 5768 5648 378 368 25 16 chr6 65363496 65363814 -123915740 - L2 LINE L2 -526 2788 2468 252 301 105 13 chr6 65364416 65364569 -123914985 + L2 LINE L2 2726 2892 -422 1063 62 0 0 chr6 65364603 65364733 -123914821 - LTR17 LTR ERV1 -650 130 1 2376 79 0 0 chr6 65364733 65365025 -123914529 - HERV17 LTR ERV1 0 8626 8335 289 77 0 0 chr6 65365015 65365054 -123914500 - HERV17 LTR ERV1 -1078 7548 7510 * 30225 47 6 6 chr6 65365047 65366660 -123912894 - HERV17 LTR ERV1 -2607 6019 4407 2279 107 0 0 chr6 65366660 65366958 -123912596 + AluY SINE Alu 3 300 -11 30225 47 6 6 chr6 65366958 65368936 -123910618 - HERV17 LTR ERV1 -4219 4407 2430 15048 73 31 4 chr6 65368919 65370882 -123908672 - HERV17 LTR ERV1 -6610 2016 2 * 5813 76 29 3 chr6 65370882 65371642 -123907912 - LTR17 LTR ERV1 0 780 1 2489 239 46 11 chr6 65371642 65372181 -123907373 + HERV3 LTR ERV1 924 1481 -6945 1946 114 85 80 chr6 65372175 65372407 -123907147 + HERV3 LTR ERV1 3946 4182 -3631 * 8298 50 9 1 chr6 65372407 65373365 -123906189 + LTR5 LTR ERVK 1 966 -3 1946 114 85 80 chr6 65373365 65373509 -123906045 + HERV3 LTR ERV1 4182 4324 -3489 1705 233 91 0 chr6 65373516 65373846 -123905708 + HERV3 LTR ERV1 1721 2080 -6346 1619 255 9 63 chr6 65374078 65374433 -123905121 + HERV3 LTR ERV1 2066 2396 -6030 2595 59 3 0 chr6 65374433 65374740 -123904814 + AluY SINE Alu 1 308 -3 1619 255 9 63 chr6 65374740 65374811 -123904743 + HERV3 LTR ERV1 2396 2469 -5957 489 270 8 24 chr6 65374810 65374936 -123904618 + HERV3 LTR ERV1 3701 3824 -4602 * 6570 201 20 6 chr6 65374930 65376061 -123903493 + HERV3 LTR ERV1 5149 6295 -2131 2026 186 34 27 chr6 65376135 65376250 -123903304 + HERV3 LTR ERV1 7012 7125 -688 306 0 0 0 chr6 65376250 65376284 -123903270 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2026 186 34 27 chr6 65376284 65376882 -123902672 + HERV3 LTR ERV1 7125 7811 -2 1627 215 46 58 chr6 65376957 65377371 -123902183 + LTR2 LTR ERV1 41 449 0 2123 102 17 7 chr6 65377831 65378124 -123901430 + AluSq SINE Alu 1 296 -17 1870 141 33 20 chr6 65378414 65378719 -123900835 - AluSg SINE Alu -1 309 1 268 336 129 0 chr6 65379209 65379349 -123900205 - MIR SINE MIR -85 177 20 604 196 183 0 chr6 65379599 65379752 -123899802 - MER5A DNA MER1_type 0 189 9 200 171 0 0 chr6 65380482 65380517 -123899037 - L2 LINE L2 -19 3253 3219 189 74 0 0 chr6 65380537 65380564 -123898990 + (CA)n Simple_repeat Simple_repeat 2 28 0 227 256 72 34 chr6 65381253 65381449 -123898105 + MIR SINE MIR 1 247 -15 225 168 22 88 chr6 65381551 65381688 -123897866 - Zaphod DNA AcHobo -3190 841 714 2357 90 0 7 chr6 65381760 65382059 -123897495 - AluSq SINE Alu -16 297 1 26 101 0 0 chr6 65382203 65382292 -123897262 + AT_rich Low_complexity Low_complexity 1 89 0 312 98 0 0 chr6 65382701 65382742 -123896812 - 5S rRNA rRNA -80 41 1 466 302 13 0 chr6 65382865 65383014 -123896540 + MIR SINE MIR 106 256 -6 2115 153 11 21 chr6 65383434 65383807 -123895747 + L1MB4 LINE L1 5806 6174 -6 2781 116 24 12 chr6 65384412 65384835 -123894719 + MSTA LTR MaLR 1 428 0 447 225 193 28 chr6 65385014 65385232 -123894322 + L1ME1 LINE L1 5931 6184 0 1730 189 13 3 chr6 65385242 65385549 -123894005 + AluJb SINE Alu 1 310 -2 268 200 0 82 chr6 65385557 65385642 -123893912 + L1ME3 LINE L1 6084 6161 -1 1463 133 115 4 chr6 65385715 65385974 -123893580 - AluJb SINE Alu 0 306 22 2205 113 0 25 chr6 65386033 65386353 -123893201 + AluSx SINE Alu 1 312 0 184 354 26 26 chr6 65386485 65386598 -123892956 + MIR SINE MIR 30 142 -120 582 92 35 23 chr6 65388860 65388947 -123890607 + FRAM SINE Alu 72 159 -17 2140 154 0 0 chr6 65390001 65390300 -123889254 - AluSx SINE Alu -13 299 1 235 278 28 0 chr6 65390303 65390375 -123889179 + L1MC4a LINE L1 5608 5681 -440 713 189 8 8 chr6 65390389 65390511 -123889043 + FLAM_C SINE Alu 2 123 -20 2142 126 0 17 chr6 65390552 65390853 -123888701 + AluSg SINE Alu 1 296 -14 420 242 60 101 chr6 65390865 65391233 -123888321 + L1MC4a LINE L1 5720 6072 -1736 2064 143 0 3 chr6 65391268 65391562 -123887992 - AluSx SINE Alu -19 293 1 2281 120 0 0 chr6 65391793 65392093 -123887461 - AluSx SINE Alu -12 300 1 1421 123 5 0 chr6 65392622 65392817 -123886737 - AluSc SINE Alu -18 291 96 2315 85 7 0 chr6 65392849 65393142 -123886412 - AluSc SINE Alu -14 295 1 1707 187 0 10 chr6 65393169 65393479 -123886075 + AluJo SINE Alu 1 307 -5 333 0 0 0 chr6 65393485 65393522 -123886032 + (CA)n Simple_repeat Simple_repeat 1 37 0 8769 62 3 2 chr6 65393635 65394703 -123884851 + MER11C LTR ERVK 2 1070 -1 1063 178 0 0 chr6 65394705 65394885 -123884669 + AluJb SINE Alu 129 308 -4 579 29 0 0 chr6 65394891 65394960 -123884594 + (CA)n Simple_repeat Simple_repeat 1 69 0 180 0 0 0 chr6 65395308 65395328 -123884226 + (CAA)n Simple_repeat Simple_repeat 2 21 0 414 281 60 78 chr6 65395850 65396042 -123883512 + L1MEd LINE L1 666 851 -5268 2445 136 87 2 chr6 65396042 65396455 -123883099 - MER83 LTR ERV1 0 448 1 414 281 60 78 chr6 65396455 65396597 -123882957 + L1MEd LINE L1 851 994 -5125 386 258 68 21 chr6 65396599 65396789 -123882765 + L1MEd LINE L1 1056 1254 -4865 250 135 0 58 chr6 65396836 65396888 -123882666 + AluJb SINE Alu 86 134 -168 653 173 0 0 chr6 65396893 65397003 -123882551 + AluJb SINE Alu 6 115 -197 315 0 0 0 chr6 65397003 65397038 -123882516 + (CA)n Simple_repeat Simple_repeat 2 36 0 1191 160 127 20 chr6 65397047 65397160 -123882394 + AluJo SINE Alu 6 106 -206 315 0 0 0 chr6 65397160 65397195 -123882359 + (CA)n Simple_repeat Simple_repeat 1 35 0 1191 160 127 20 chr6 65397195 65397325 -123882229 + AluJo SINE Alu 106 275 -37 477 34 0 0 chr6 65397325 65397384 -123882170 + (TG)n Simple_repeat Simple_repeat 1 59 0 247 223 21 21 chr6 65397398 65397425 -123882129 + GA-rich Low_complexity Low_complexity 4 30 -67 3497 204 19 65 chr6 65397425 65398441 -123881113 - LTR5 LTR ERVK 0 969 1 247 223 21 21 chr6 65398441 65398507 -123881047 + GA-rich Low_complexity Low_complexity 29 97 0 382 301 67 38 chr6 65398521 65398863 -123880691 + HAL1 LINE L1 1424 1775 -732 2343 97 53 19 chr6 65399595 65399955 -123879599 + Tigger2a DNA MER2_type 1 372 -62 247 252 129 39 chr6 65400047 65400202 -123879352 + L1ME4a LINE L1 5942 6110 -11 2352 99 0 3 chr6 65400999 65401302 -123878252 - AluSx SINE Alu -10 302 1 285 105 0 0 chr6 65401469 65401507 -123878047 + L1MD3 LINE L1 6769 6806 -1189 2297 87 0 36 chr6 65401508 65401817 -123877737 + AluSx SINE Alu 3 300 -12 191 319 14 0 chr6 65402443 65402512 -123877042 + L2 LINE L2 3203 3272 0 642 204 23 15 chr6 65402972 65403104 -123876450 + FLAM_A SINE Alu 1 133 0 2011 155 7 0 chr6 65403109 65403419 -123876135 + AluSx SINE Alu 1 312 0 959 271 172 34 chr6 65404139 65404604 -123874950 + MLT1H LTR MaLR 18 546 -3 2026 148 7 0 chr6 65404806 65405104 -123874450 + AluSx SINE Alu 1 300 -12 718 118 0 0 chr6 65405693 65405795 -123873759 + AluSq/x SINE Alu 3 104 -209 209 357 0 25 chr6 65406265 65406422 -123873132 + CT-rich Low_complexity Low_complexity 1 153 0 278 245 41 71 chr6 65407473 65407571 -123871983 + L1ME3A LINE L1 5964 6058 -112 3620 182 122 7 chr6 65407733 65408470 -123871084 - MER21B LTR ERV1 -41 822 1 349 150 0 0 chr6 65408548 65408608 -123870946 - MER21B-int LTR ERV1 -42 4149 4090 305 54 0 0 chr6 65408599 65408636 -123870918 - pTR5 LTR ERV1 -2044 394 358 * 19751 105 48 46 chr6 65408648 65412474 -123867080 - MER21-int LTR ERV1 0 2438 17 990 171 113 42 chr6 65412473 65412712 -123866842 - pTR5 LTR ERV1 -1440 998 743 * 4156 126 49 23 chr6 65412711 65413293 -123866261 - MER21-int LTR ERV1 -90 4101 3497 3161 101 11 117 chr6 65413293 65413865 -123865689 + MER9 LTR ERVK 1 511 0 4156 126 49 23 chr6 65413865 65413973 -123865581 - MER21-int LTR ERV1 -694 3497 3393 391 177 63 13 chr6 65413974 65414053 -123865501 - LTR36 LTR ERV1 0 611 529 2266 89 23 0 chr6 65414701 65415003 -123864551 + AluSq SINE Alu 1 309 -4 2121 117 7 3 chr6 65415370 65415669 -123863885 - AluSx SINE Alu -12 300 1 262 250 0 48 chr6 65416383 65416467 -123863087 + MIR SINE MIR 103 182 -80 767 123 0 0 chr6 65417074 65417188 -123862366 + AluSg/x SINE Alu 195 308 -4 2149 135 3 0 chr6 65417608 65417911 -123861643 - AluSx SINE Alu -8 304 1 297 0 0 0 chr6 65418733 65418766 -123860788 + (A)n Simple_repeat Simple_repeat 1 33 0 1765 106 4 4 chr6 65418772 65419009 -123860545 + AluSp SINE Alu 1 237 -76 459 250 182 5 chr6 65419070 65419256 -123860298 + MIR SINE MIR 32 250 -12 326 277 43 0 chr6 65419348 65419442 -123860112 + MER5A DNA MER1_type 8 105 -84 252 233 0 68 chr6 65420671 65420744 -123858810 + MIR3 SINE MIR 121 188 -20 1977 163 0 0 chr6 65420761 65421061 -123858493 - AluJo SINE Alu -12 300 1 22 0 0 0 chr6 65422988 65423010 -123856544 + AT_rich Low_complexity Low_complexity 1 22 0 277 345 42 0 chr6 65423051 65423170 -123856384 - L2 LINE L2 -6 3307 3184 1566 216 61 31 chr6 65423199 65423488 -123856066 + L1MCa LINE L1 1969 2258 -4168 3314 68 23 14 chr6 65423488 65423928 -123855626 + MLT2A1 LTR ERVL 1 444 0 1566 216 61 31 chr6 65423928 65424157 -123855397 + L1MCa LINE L1 2258 2479 -3947 187 183 70 0 chr6 65424163 65424226 -123855328 - L2 LINE L2 -161 3152 3082 2080 133 3 0 chr6 65424226 65424512 -123855042 + AluSx SINE Alu 1 287 -25 1395 128 21 45 chr6 65425700 65425942 -123853612 - MER46A DNA MER2_type 0 236 1 859 214 80 116 chr6 65426092 65426428 -123853126 - MER77 LTR ERV1 -240 365 42 1857 109 0 82 chr6 65427005 65427299 -123852255 - AluSx SINE Alu -14 298 29 1159 106 196 0 chr6 65428468 65428657 -123850897 + MER30 DNA MER1_type 1 226 -4 679 44 55 11 chr6 65428892 65428983 -123850571 - HY3 scRNA scRNA -6 95 1 192 286 0 0 chr6 65429407 65429456 -123850098 - MIR SINE MIR -3 259 211 2252 112 3 0 chr6 65430035 65430331 -123849223 - AluSx SINE Alu -15 297 1 339 317 62 46 chr6 65430443 65430683 -123848871 + MIR SINE MIR 6 249 -13 1693 215 34 0 chr6 65431096 65431417 -123848137 - MER58B DNA MER1_type 0 341 10 211 381 18 18 chr6 65431423 65431591 -123847963 + MIR3 SINE MIR 31 198 -10 815 165 8 0 chr6 65431965 65432092 -123847462 + FLAM_A SINE Alu 1 128 -5 411 83 0 0 chr6 65432591 65432651 -123846903 + (GA)n Simple_repeat Simple_repeat 2 61 0 438 280 51 2 chr6 65433202 65433375 -123846179 + MIR SINE MIR 5 183 -67 381 263 34 0 chr6 65434646 65434764 -123844790 - MIR SINE MIR 0 262 141 2179 110 14 0 chr6 65435498 65435788 -123843766 + AluSg SINE Alu 1 294 -16 1051 188 9 28 chr6 65435901 65436114 -123843440 - MER3 DNA MER1_type 0 209 1 361 314 0 10 chr6 65436745 65436847 -123842707 + GA-rich Low_complexity Low_complexity 3 103 0 2902 142 35 8 chr6 65437149 65437656 -123841898 + L1MA4 LINE L1 5769 6289 -11 714 193 250 32 chr6 65437752 65438068 -123841486 + L1MC4a LINE L1 6670 7054 -754 830 256 117 58 chr6 65438070 65438597 -123840957 + L1MC4 LINE L1 7295 7868 -174 4312 94 7 9 chr6 65438597 65439152 -123840402 + MER41A LTR ERV1 1 554 0 830 256 117 58 chr6 65439152 65439264 -123840290 + L1MC4 LINE L1 7868 7972 -70 880 192 48 43 chr6 65439582 65439790 -123839764 - AluJb SINE Alu -14 298 90 442 270 27 0 chr6 65440603 65440714 -123838840 - Charlie8 DNA MER1_type -2196 221 108 645 246 127 25 chr6 65440825 65441061 -123838493 + L1MC5 LINE L1 6977 7236 -725 385 221 12 0 chr6 65441235 65441321 -123838233 + L1MC5 LINE L1 7299 7385 -576 958 235 124 34 chr6 65441419 65441484 -123838070 + L1MD3 LINE L1 6694 6752 -1243 2300 94 7 0 chr6 65441484 65441781 -123837773 - AluSg SINE Alu -11 299 1 958 235 124 34 chr6 65441781 65442094 -123837460 + L1MD3 LINE L1 6752 7106 -889 413 256 0 0 chr6 65442097 65442183 -123837371 + MLT1F1 LTR MaLR 35 120 -447 2335 186 77 23 chr6 65442183 65442546 -123837008 + L1MD3 LINE L1 7408 7813 -182 2058 113 7 7 chr6 65442546 65442837 -123836717 + AluSx SINE Alu 1 291 -21 2335 186 77 23 chr6 65442837 65443031 -123836523 + L1MD3 LINE L1 7813 7995 0 846 244 71 52 chr6 65443026 65443464 -123836090 + L1MC5 LINE L1 7480 7925 -36 * 225 262 29 39 chr6 65444868 65444971 -123834583 + GA-rich Low_complexity Low_complexity 1 102 0 1195 64 0 182 chr6 65445348 65445584 -123833970 + 7SK RNA RNA 1 193 0 48 32 0 0 chr6 65445706 65445768 -123833786 + AT_rich Low_complexity Low_complexity 1 62 0 1761 66 49 0 chr6 65445774 65446000 -123833554 - AluSx SINE Alu -75 237 1 186 209 0 0 chr6 65446176 65446219 -123833335 + (TA)n Simple_repeat Simple_repeat 1 43 0 194 337 58 0 chr6 65446611 65446697 -123832857 - L2 LINE L2 -590 2724 2634 504 0 0 0 chr6 65446848 65446904 -123832650 + (CA)n Simple_repeat Simple_repeat 2 57 0 372 278 156 17 chr6 65446912 65447085 -123832469 + L2 LINE L2 3117 3313 0 2090 118 3 10 chr6 65447222 65447527 -123832027 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr6 65447867 65447888 -123831666 + AT_rich Low_complexity Low_complexity 1 21 0 318 131 16 0 chr6 65447913 65447974 -123831580 - L1MA8 LINE L1 -4 6287 6226 938 168 6 12 chr6 65447974 65448130 -123831424 + MER2 DNA MER2_type 1 155 -190 1374 161 175 7 chr6 65448130 65448415 -123831139 - MER65A LTR ERV1 0 445 113 279 0 0 0 chr6 65448416 65448447 -123831107 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1742 153 43 0 chr6 65448449 65448730 -123830824 - AluJb SINE Alu -19 293 1 378 203 14 0 chr6 65448793 65448867 -123830687 + MER116 DNA Mariner 4 78 -2 2622 196 73 4 chr6 65448895 65448956 -123830598 + MER41D LTR ERV1 2 57 -500 1517 121 17 4 chr6 65448956 65449188 -123830366 + L1PA8 LINE L1 5938 6172 0 2622 196 73 4 chr6 65449188 65449646 -123829908 + MER41D LTR ERV1 57 557 0 249 33 0 0 chr6 65449874 65449904 -123829650 + (CCTA)n Simple_repeat Simple_repeat 2 31 0 1903 160 3 0 chr6 65450495 65450801 -123828753 - AluJo SINE Alu -3 309 3 279 137 0 179 chr6 65453115 65453185 -123826369 + MER116 DNA Mariner 1 51 -29 2156 91 59 0 chr6 65453185 65453471 -123826083 + AluY SINE Alu 1 303 -8 279 137 0 179 chr6 65453471 65453495 -123826059 + MER116 DNA Mariner 51 78 -2 1687 258 100 34 chr6 65455150 65456015 -123823539 + L2 LINE L2 2383 3309 -4 278 323 177 5 chr6 65456443 65456663 -123822891 - L1MC4a LINE L1 -1870 5938 5681 276 276 102 47 chr6 65456710 65456837 -123822717 + L2 LINE L2 3139 3272 0 968 271 91 29 chr6 65457089 65457375 -123822179 + L1M1 LINE L1 5318 5645 -530 2149 93 0 34 chr6 65457375 65457723 -123821831 + AluSx SINE Alu 1 338 0 968 271 91 29 chr6 65457723 65457885 -123821669 + L1M1 LINE L1 5645 5795 -380 209 167 42 28 chr6 65457897 65457969 -123821585 + (TA)n Simple_repeat Simple_repeat 1 73 0 2230 102 3 23 chr6 65458155 65458459 -123821095 - AluSx SINE Alu -14 298 1 691 246 177 35 chr6 65460060 65460602 -123818952 + L2 LINE L2 2546 3246 -67 286 260 156 0 chr6 65460680 65460757 -123818797 + L2 LINE L2 3223 3311 -2 2164 114 0 3 chr6 65461045 65461335 -123818219 + AluSx SINE Alu 3 291 -21 318 300 83 51 chr6 65462756 65462914 -123816640 - MIR SINE MIR -1 261 91 1152 228 15 8 chr6 65462914 65463173 -123816381 - MIR SINE MIR 0 262 2 318 300 83 51 chr6 65463173 65463267 -123816287 - MIR SINE MIR -171 91 1 245 356 40 10 chr6 65463982 65464083 -123815471 + MIR SINE MIR 55 158 -104 276 333 94 13 chr6 65465192 65465351 -123814203 + MIR SINE MIR 70 241 -21 236 250 164 0 chr6 65466362 65466466 -123813088 - MER103 DNA DNA -1 165 45 181 319 0 0 chr6 65466547 65466594 -123812960 + L3 LINE CR1 1530 1576 -1 262 262 93 52 chr6 65466917 65467089 -123812465 - L2 LINE L2 0 3313 3135 257 258 11 43 chr6 65468470 65468563 -123810991 + GA-rich Low_complexity Low_complexity 1 90 0 1473 176 35 49 chr6 65469414 65469698 -123809856 - AluJo SINE Alu -32 280 1 1522 164 0 8 chr6 65470179 65470417 -123809137 + MER46A DNA MER2_type 1 236 0 2169 98 0 14 chr6 65470765 65471050 -123808504 + AluSx SINE Alu 1 281 -31 560 178 56 0 chr6 65471373 65471463 -123808091 + Tigger3b DNA MER2_type 1 95 -1136 5481 103 92 17 chr6 65471465 65472356 -123807198 + Tigger3b DNA MER2_type 274 1231 0 207 0 0 0 chr6 65472480 65472503 -123807051 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 311 316 41 31 chr6 65472506 65472604 -123806950 - L2 LINE L2 -11 3261 3163 2373 92 0 0 chr6 65472664 65472959 -123806595 - AluY SINE Alu -16 295 1 2171 124 3 0 chr6 65474560 65474859 -123804695 - AluSx SINE Alu -12 300 1 800 190 88 60 chr6 65475691 65475875 -123803679 + MIR SINE MIR 10 203 -59 2033 94 60 0 chr6 65475875 65476175 -123803379 - AluSx SINE Alu 0 316 1 800 190 88 60 chr6 65476175 65476205 -123803349 + MIR SINE MIR 203 231 -31 1763 132 0 42 chr6 65477449 65477593 -123801961 + AluSx SINE Alu 1 129 -183 2506 57 3 3 chr6 65477593 65477893 -123801661 + AluY SINE Alu 2 301 -10 1763 132 0 42 chr6 65477893 65478035 -123801519 + AluSx SINE Alu 129 275 -37 303 308 65 35 chr6 65478145 65478314 -123801240 + MIR SINE MIR 41 214 -48 216 0 0 0 chr6 65478547 65478571 -123800983 + (TG)n Simple_repeat Simple_repeat 2 25 0 228 206 0 59 chr6 65478578 65478646 -123800908 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 230 163 0 0 chr6 65478668 65478711 -123800843 + L1MC4 LINE L1 6663 6705 -1337 628 140 21 0 chr6 65479366 65479459 -123800095 + FLAM_A SINE Alu 30 124 -18 2049 119 7 0 chr6 65481564 65481858 -123797696 - AluSp SINE Alu -17 296 1 219 238 0 0 chr6 65482035 65482046 -123797508 + A-rich Low_complexity Low_complexity 1 11 -69 776 33 0 0 chr6 65482046 65482136 -123797418 + L1PA3 LINE L1 6063 6152 -3 219 238 0 0 chr6 65482136 65482204 -123797350 + A-rich Low_complexity Low_complexity 10 80 0 1919 182 17 57 chr6 65486064 65486141 -123793413 + MER58D DNA MER1_type 1 80 -2340 2250 116 0 0 chr6 65486141 65486442 -123793112 - AluSx SINE Alu -11 301 1 1919 182 17 57 chr6 65486442 65486766 -123792788 + MER58D DNA MER1_type 80 386 0 938 185 95 11 chr6 65488027 65488216 -123791338 + MER3 DNA MER1_type 1 205 -4 1958 189 24 3 chr6 65488237 65488571 -123790983 + MER58B DNA MER1_type 1 341 0 216 304 29 0 chr6 65488701 65488770 -123790784 - MIR SINE MIR -126 136 66 279 262 127 56 chr6 65488833 65488959 -123790595 - L2 LINE L2 -1 3271 3137 180 382 13 0 chr6 65489037 65489113 -123790441 - L2 LINE L2 -497 2817 2741 715 251 26 0 chr6 65489114 65489309 -123790245 - LTR16C LTR ERVL 0 491 292 467 322 130 40 chr6 65489472 65489873 -123789681 - L2 LINE L2 -594 2720 2284 2170 219 72 25 chr6 65489881 65490447 -123789107 + MLT1E LTR MaLR 1 593 0 212 277 0 0 chr6 65490541 65490588 -123788966 + MIR SINE MIR 98 144 -64 391 233 101 54 chr6 65491190 65491316 -123788238 + MER58A DNA MER1_type 48 179 -45 3087 135 74 10 chr6 65491316 65491877 -123787677 + MER6A DNA MER2_type -2 605 0 1679 189 23 0 chr6 65492411 65492754 -123786800 + L1MD3 LINE L1 7637 7987 -8 2196 108 0 0 chr6 65492760 65493047 -123786507 + AluSx SINE Alu 1 287 -25 40 0 0 0 chr6 65493047 65493087 -123786467 + AT_rich Low_complexity Low_complexity 1 40 0 350 314 34 17 chr6 65493359 65493477 -123786077 - L2 LINE L2 -12 3301 3182 1641 109 31 12 chr6 65493859 65494116 -123785438 + MER1B DNA MER1_type 1 262 -77 740 238 40 30 chr6 65494121 65494356 -123785198 + L1MC4 LINE L1 7737 7977 -65 1116 218 93 34 chr6 65494356 65494709 -123784845 + MLT1A2 LTR MaLR 1 374 0 740 238 40 30 chr6 65494709 65494776 -123784778 + L1MC4 LINE L1 7977 8042 0 2132 136 22 6 chr6 65495079 65495439 -123784115 + MER47A DNA MER2_type 1 366 0 21 0 0 0 chr6 65495517 65495538 -123784016 + AT_rich Low_complexity Low_complexity 1 21 0 499 305 125 16 chr6 65495700 65495956 -123783598 - L3b LINE CR1 -196 1387 1104 215 324 43 99 chr6 65496154 65496407 -123783147 - L3 LINE CR1 -1101 476 238 480 258 116 7 chr6 65496753 65496908 -123782646 - MER5B DNA MER1_type -1 177 6 332 326 145 43 chr6 65496938 65497019 -123782535 - L2 LINE L2 -448 2866 2795 1498 181 29 38 chr6 65497019 65497333 -123782221 - AluJo SINE Alu -1 311 1 332 326 145 43 chr6 65497333 65497533 -123782021 - L2 LINE L2 -519 2795 2556 298 227 53 13 chr6 65497761 65497836 -123781718 + MER91C DNA MER1_type 25 102 -38 302 282 286 24 chr6 65497851 65498106 -123781448 + L3 LINE CR1 1008 1329 -248 353 285 107 32 chr6 65498405 65498876 -123780678 + MLT1L LTR MaLR 3 527 -88 1834 158 24 0 chr6 65499455 65499747 -123779807 - AluJo SINE Alu -13 299 1 209 165 38 13 chr6 65500162 65500241 -123779313 + (TA)n Simple_repeat Simple_repeat 1 81 0 33 0 0 23 chr6 65500246 65500270 -123779284 + AT_rich Low_complexity Low_complexity 1 25 -18 1800 160 7 14 chr6 65500270 65500563 -123778991 + AluJb SINE Alu 1 291 -21 33 0 0 23 chr6 65500563 65500582 -123778972 + AT_rich Low_complexity Low_complexity 25 43 0 1537 240 96 17 chr6 65501028 65501495 -123778059 - MLT1D LTR MaLR 0 505 2 2620 72 11 11 chr6 65501658 65502017 -123777537 - L1PA8A LINE L1 -9 6122 5764 312 279 34 67 chr6 65502157 65502177 -123777377 + Charlie8 DNA MER1_type 102 121 -220 2267 114 7 0 chr6 65502177 65502483 -123777071 + AluSg SINE Alu 1 308 -2 312 279 34 67 chr6 65502483 65502641 -123776913 + Charlie8 DNA MER1_type 121 274 -67 741 237 77 21 chr6 65503141 65503335 -123776219 - MIR SINE MIR -18 244 40 240 275 154 7 chr6 65503542 65503691 -123775863 + MIR3 SINE MIR 38 208 0 220 362 19 29 chr6 65504132 65504237 -123775317 + MIR SINE MIR 46 149 -113 25 0 0 0 chr6 65505586 65505611 -123773943 + AT_rich Low_complexity Low_complexity 1 25 0 1007 214 42 0 chr6 65506044 65506259 -123773295 - MER58A DNA MER1_type 0 224 1 311 215 39 108 chr6 65506362 65506492 -123773062 + L2 LINE L2 3192 3312 -1 195 254 85 34 chr6 65507446 65507505 -123772049 - MIR3 SINE MIR -27 181 120 197 253 213 0 chr6 65508962 65509037 -123770517 - MIR SINE MIR -112 150 60 234 355 45 20 chr6 65509236 65509436 -123770118 - L2 LINE L2 -261 3011 2807 264 188 0 0 chr6 65509596 65509644 -123769910 - L2 LINE L2 0 3272 3225 182 327 142 0 chr6 65509644 65509806 -123769748 - L2 LINE L2 -683 2631 2447 343 160 53 0 chr6 65511901 65511976 -123767578 + L1MB4 LINE L1 6078 6156 -24 462 187 22 33 chr6 65512311 65512402 -123767152 - MER5A DNA MER1_type 0 189 100 2180 76 10 0 chr6 65513538 65513827 -123765727 + AluSg SINE Alu 1 292 -18 2222 77 25 0 chr6 65513939 65514225 -123765329 - AluSg SINE Alu -16 294 2 314 292 184 64 chr6 65514990 65515538 -123764016 + L1M2 LINE L1 473 1086 -5763 22 0 0 0 chr6 65516332 65516354 -123763200 + AT_rich Low_complexity Low_complexity 1 22 0 217 274 105 42 chr6 65516796 65516891 -123762663 - L2 LINE L2 0 3313 3213 208 206 87 98 chr6 65516914 65517006 -123762548 - MIR3 SINE MIR -9 199 109 339 291 67 61 chr6 65517165 65517330 -123762224 - L2 LINE L2 -218 3054 2889 1900 153 10 0 chr6 65518381 65518676 -123760878 - AluJb SINE Alu -14 298 1 524 267 8 0 chr6 65518725 65518845 -123760709 + FLAM_A SINE Alu 1 121 -12 823 175 148 44 chr6 65519211 65519576 -123759978 + L1MC5 LINE L1 7251 7653 -308 2042 149 13 3 chr6 65519737 65520046 -123759508 - AluSx SINE Alu 0 312 1 1048 206 169 7 chr6 65520186 65520482 -123759072 - MER2 DNA MER2_type 0 344 1 612 282 124 10 chr6 65521297 65521730 -123757824 + L1MC4a LINE L1 5327 5824 -297 1284 248 116 5 chr6 65522023 65522410 -123757144 - LTR16A LTR ERVL -5 445 16 2206 100 0 10 chr6 65522450 65522749 -123756805 - AluSx SINE Alu -16 296 1 3520 173 114 4 chr6 65524066 65524854 -123754700 - L1MD2 LINE L1 -16 6343 5469 1190 123 6 11 chr6 65524864 65525043 -123754511 - AluSx SINE Alu -14 295 118 309 142 0 11 chr6 65525092 65525161 -123754393 + Alu SINE Alu 2 45 -258 804 135 0 0 chr6 65525161 65525272 -123754282 - AluSx SINE Alu -201 111 1 1265 171 70 75 chr6 65525277 65525464 -123754090 - L1MC/D LINE L1 -743 5403 5217 2166 121 0 3 chr6 65525464 65525770 -123753784 - AluSx SINE Alu -7 305 1 1265 171 70 75 chr6 65525770 65526191 -123753363 - L1MC/D LINE L1 -929 5217 4855 503 209 86 0 chr6 65526383 65526488 -123753066 + MER2 DNA MER2_type 1 114 -231 21 36 0 0 chr6 65526514 65526542 -123753012 + AT_rich Low_complexity Low_complexity 1 28 0 354 239 0 0 chr6 65526542 65526609 -123752945 + MER2 DNA MER2_type 278 344 -1 21 0 0 0 chr6 65526622 65526643 -123752911 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr6 65526759 65526797 -123752757 + AT_rich Low_complexity Low_complexity 1 38 0 2845 0 3 0 chr6 65526919 65527227 -123752327 + AluYa5 SINE Alu 1 309 -2 1810 173 0 17 chr6 65527898 65528198 -123751356 + AluJo SINE Alu 1 295 -17 340 238 38 0 chr6 65528969 65529074 -123750480 + L1MC5 LINE L1 7817 7925 -36 186 71 0 0 chr6 65530024 65530052 -123749502 + (T)n Simple_repeat Simple_repeat 1 28 0 2045 116 0 11 chr6 65530988 65531299 -123748255 - AluSg SINE Alu 0 308 1 2048 143 0 0 chr6 65531516 65531809 -123747745 + AluSx SINE Alu 4 296 -16 772 161 14 0 chr6 65532765 65532908 -123746646 + L1P LINE L1 4887 5031 -1115 2303 123 89 19 chr6 65533117 65533533 -123746021 - MER65A LTR ERV1 0 445 1 1041 231 78 9 chr6 65533533 65534097 -123745457 - MER65A-int LTR ERV1 0 4871 4237 1168 237 153 18 chr6 65534097 65534490 -123745064 - MER65A-int LTR ERV1 -739 4132 3687 784 211 88 24 chr6 65534617 65534889 -123744665 - MER65A-int LTR ERV1 -977 3959 3594 960 207 121 44 chr6 65534898 65535363 -123744191 - MER65A-int LTR ERV1 -1593 4738 2534 * 1090 196 79 85 chr6 65535354 65535594 -123743960 - MER65A-int LTR ERV1 -1913 4418 4178 2333 93 3 0 chr6 65535594 65535896 -123743658 + AluSp SINE Alu 1 303 -10 1090 196 79 85 chr6 65535896 65536321 -123743233 - MER65A-int LTR ERV1 -2153 4178 3735 716 125 19 116 chr6 65536399 65536512 -123743042 - MER65A-int LTR ERV1 -2868 3730 3608 1360 150 146 8 chr6 65536512 65536786 -123742768 + AluJo SINE Alu 1 308 0 1835 191 3 3 chr6 65536789 65537098 -123742456 + AluJo SINE Alu 4 312 0 716 125 19 116 chr6 65537098 65537195 -123742359 - MER65A-int LTR ERV1 -2992 3606 3536 1227 159 128 68 chr6 65537458 65537943 -123741611 - MER65A-int LTR ERV1 -3119 3479 2966 863 161 93 51 chr6 65537960 65538196 -123741358 - LTR57-int LTR ERVL -4793 550 305 197 182 0 91 chr6 65538199 65538254 -123741300 - L3b LINE CR1 -105 1478 1429 2078 126 7 7 chr6 65538317 65538626 -123740928 - AluSx SINE Alu -3 309 1 1041 60 8 0 chr6 65538636 65538770 -123740784 - AluY SINE Alu 0 311 177 2396 67 0 6 chr6 65538788 65539101 -123740453 - AluY SINE Alu 0 311 1 1065 241 161 26 chr6 65539103 65539593 -123739961 - MER65A-int LTR ERV1 -4245 626 71 2312 115 96 10 chr6 65539665 65540073 -123739481 - MER65A LTR ERV1 -2 443 1 779 70 0 10 chr6 65540127 65540227 -123739327 + HY3 scRNA scRNA 1 99 -2 1087 150 0 12 chr6 65540426 65540593 -123738961 - AluJo SINE Alu -31 281 117 308 122 0 0 chr6 65540618 65540659 -123738895 - FAM SINE Alu -9 166 126 1885 200 0 6 chr6 65540687 65541002 -123738552 + 7SLRNA srpRNA srpRNA 1 313 -7 1031 283 202 21 chr6 65541075 65541101 -123738453 + L2 LINE L2 2459 2479 -834 2238 106 0 0 chr6 65541101 65541393 -123738161 - AluSg SINE Alu -18 292 1 1031 283 202 21 chr6 65541393 65542081 -123737473 + L2 LINE L2 2479 3311 -2 27 29 0 0 chr6 65542421 65542455 -123737099 + AT_rich Low_complexity Low_complexity 1 34 0 219 292 106 44 chr6 65543399 65543512 -123736042 - MER5B DNA MER1_type -30 148 29 235 343 0 20 chr6 65544939 65545041 -123734513 + MIR SINE MIR 98 197 -65 353 238 66 40 chr6 65545497 65545648 -123733906 + L1ME4a LINE L1 5420 5574 -588 1760 182 0 3 chr6 65546352 65546649 -123732905 + AluJo SINE Alu 4 299 -13 389 231 173 0 chr6 65547039 65547195 -123732359 + L1ME4a LINE L1 5709 5891 -230 186 43 0 0 chr6 65547631 65547654 -123731900 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 441 0 0 0 chr6 65547653 65547702 -123731852 + (TA)n Simple_repeat Simple_repeat 1 49 0 23 33 0 0 chr6 65547745 65547775 -123731779 + AT_rich Low_complexity Low_complexity 1 30 0 764 149 0 108 chr6 65548186 65548334 -123731220 + FLAM_A SINE Alu 1 132 -1 1756 173 0 20 chr6 65548831 65549126 -123730428 + AluJb SINE Alu 1 289 -23 1735 174 7 10 chr6 65549185 65549483 -123730071 + AluJo SINE Alu 1 297 -15 21 0 0 0 chr6 65549895 65549916 -123729638 + AT_rich Low_complexity Low_complexity 1 21 0 356 286 35 23 chr6 65550536 65550707 -123728847 - L1ME LINE L1 -374 5747 5575 417 263 0 76 chr6 65551171 65551234 -123728320 + HAL1 LINE L1 27 93 -2414 690 126 67 82 chr6 65551234 65551369 -123728185 + FLAM_C SINE Alu 1 133 0 417 263 0 76 chr6 65551369 65551476 -123728078 + HAL1 LINE L1 93 184 -2323 297 258 129 49 chr6 65551522 65551685 -123727869 + MIR SINE MIR 86 261 -1 701 289 107 35 chr6 65551827 65552249 -123727305 + HAL1 LINE L1 593 1044 -1463 392 279 8 33 chr6 65552313 65552435 -123727119 - MIR3 SINE MIR -12 196 78 2036 159 40 26 chr6 65552536 65552914 -123726640 + L1MA7 LINE L1 5905 6287 -4 879 167 151 21 chr6 65552939 65553131 -123726423 + AluJb SINE Alu 86 302 -10 382 251 196 18 chr6 65553206 65553369 -123726185 - MIR SINE MIR -56 206 15 1459 156 78 26 chr6 65553446 65553754 -123725800 - MER33 DNA MER1_type 0 324 1 216 0 0 0 chr6 65554450 65554474 -123725080 + (T)n Simple_repeat Simple_repeat 1 24 0 454 257 7 52 chr6 65555016 65555152 -123724402 + MER94 DNA DNA 1 130 -4 236 211 18 35 chr6 65555817 65555874 -123723680 + L2 LINE L2 3207 3262 -10 319 215 189 66 chr6 65556206 65556253 -123723301 + MIR SINE MIR 6 46 -216 1721 126 98 7 chr6 65556253 65556538 -123723016 - AluSx SINE Alu -1 311 1 319 215 189 66 chr6 65556538 65556718 -123722836 + MIR SINE MIR 46 261 -1 586 229 20 26 chr6 65556936 65557089 -123722465 + MER117 DNA MER1_type 39 190 -7 2127 100 11 4 chr6 65557509 65557819 -123721735 + AluSq SINE Alu 1 312 0 254 203 14 68 chr6 65558544 65558618 -123720936 - L1ME4a LINE L1 -59 6062 5993 991 179 23 6 chr6 65559670 65559843 -123719711 - MLT1D LTR MaLR -329 176 1 1783 192 0 0 chr6 65560403 65560695 -123718859 + AluJb SINE Alu 5 296 -16 683 285 98 0 chr6 65560726 65560919 -123718635 - MIR SINE MIR -44 218 7 427 308 18 29 chr6 65561079 65561237 -123718317 + MIR SINE MIR 29 183 -62 616 146 0 0 chr6 65561302 65561391 -123718163 - AluJb SINE Alu -13 299 211 489 271 104 63 chr6 65561726 65562043 -123717511 - MER102a DNA MER1_type 0 330 1 284 298 97 26 chr6 65563010 65563124 -123716430 - MIR3 SINE MIR -77 131 10 1832 215 101 39 chr6 65563459 65564002 -123715552 - MER34B LTR ERV1 -19 546 1 250 208 21 0 chr6 65564059 65564107 -123715447 + MER57A LTR ERV1 295 343 -60 276 163 0 0 chr6 65564259 65564302 -123715252 - MIR SINE MIR -109 153 111 650 316 26 17 chr6 65564310 65564541 -123715013 - MIR SINE MIR -17 245 13 446 319 22 15 chr6 65564566 65564701 -123714853 - L2 LINE L2 -37 3235 3100 1304 223 67 82 chr6 65564716 65565255 -123714299 + MER34B LTR ERV1 35 565 0 1312 294 116 14 chr6 65565793 65566345 -123713209 - MLT2F LTR ERVL -53 610 3 26 0 0 0 chr6 65616751 65616777 -123662777 + AT_rich Low_complexity Low_complexity 1 26 0 469 268 85 66 chr6 65616795 65617211 -123662343 + L1 LINE L1 3036 3463 -2683 1795 164 24 3 chr6 65617266 65617553 -123662001 + AluJo SINE Alu 1 293 -19 21 0 0 0 chr6 65617578 65617599 -123661955 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr6 65618174 65618206 -123661348 + AT_rich Low_complexity Low_complexity 1 32 0 1976 145 18 68 chr6 65618215 65618541 -123661013 + L1MB2 LINE L1 5797 6102 -69 1758 154 11 18 chr6 65618541 65618850 -123660704 + AluJb SINE Alu 1 307 0 1976 145 18 68 chr6 65618850 65618916 -123660638 + L1MB2 LINE L1 6102 6170 -1 2124 114 7 7 chr6 65619053 65619351 -123660203 - AluSx SINE Alu -14 298 1 293 254 0 69 chr6 65619491 65619621 -123659933 - L2 LINE L2 -14 3258 3138 403 258 161 16 chr6 65620416 65620602 -123658952 - MIR SINE MIR 0 262 50 2304 112 0 0 chr6 65620645 65620940 -123658614 + AluSg SINE Alu 1 295 -15 2109 110 17 3 chr6 65622256 65622548 -123657006 - AluSg SINE Alu -14 296 1 1174 95 12 12 chr6 65622550 65622718 -123656836 - L1PA10 LINE L1 -2 6166 5999 607 129 0 143 chr6 65623299 65623439 -123656115 + AluJo/FLAM SINE Alu 12 131 -181 2260 126 0 0 chr6 65623441 65623751 -123655803 + AluSx SINE Alu 1 310 -2 26 0 0 0 chr6 65623839 65623865 -123655689 + AT_rich Low_complexity Low_complexity 1 26 0 244 234 0 0 chr6 65623871 65623918 -123655636 - LTR51 LTR ERV1 -48 623 577 2382 101 3 0 chr6 65624009 65624315 -123655239 + AluSp SINE Alu 1 307 -6 1136 134 39 0 chr6 65624571 65624750 -123654804 + AluSg/x SINE Alu 117 302 -10 300 271 12 0 chr6 65624954 65625039 -123654515 + CT-rich Low_complexity Low_complexity 1 86 0 2268 110 7 0 chr6 65626781 65627082 -123652472 - AluSx SINE Alu -9 303 1 276 30 0 0 chr6 65627576 65627609 -123651945 + (CA)n Simple_repeat Simple_repeat 1 33 0 2264 91 0 42 chr6 65628009 65628316 -123651238 - AluSg SINE Alu -16 294 1 251 323 94 24 chr6 65628621 65628748 -123650806 + MIR3 SINE MIR 22 157 -51 259 200 27 160 chr6 65629319 65629469 -123650085 + MLT1L LTR MaLR 45 174 -441 487 261 111 30 chr6 65629542 65629741 -123649813 + MLT1L LTR MaLR 349 563 -52 1294 214 19 26 chr6 65629842 65630150 -123649404 - MLT1F LTR MaLR -12 530 225 2525 168 31 31 chr6 65630152 65630340 -123649214 - MER74A LTR ERVL -3 555 368 2125 127 0 3 chr6 65630340 65630631 -123648923 - AluSc SINE Alu -19 290 1 2525 168 31 31 chr6 65630631 65630923 -123648631 - MER74A LTR ERVL -189 369 75 911 237 74 9 chr6 65630957 65631172 -123648382 - MLT1F LTR MaLR -313 229 1 433 248 0 17 chr6 65631250 65631367 -123648187 - LTR67 LTR ERVL -14 543 429 2001 139 0 7 chr6 65631996 65632283 -123647271 + AluSx SINE Alu 1 285 -27 1049 63 0 8 chr6 65632446 65632572 -123646982 - AluSc SINE Alu -78 231 107 901 206 22 0 chr6 65632882 65633066 -123646488 - MER5A DNA MER1_type -1 188 1 1912 122 0 7 chr6 65633133 65633424 -123646130 - AluSq SINE Alu 0 330 42 765 307 77 17 chr6 65633535 65633887 -123645667 - MLT1J LTR MaLR -23 488 116 302 295 29 0 chr6 65634153 65634258 -123645296 + MER103 DNA DNA 56 163 -3 2196 101 34 3 chr6 65634552 65634849 -123644705 - AluSx SINE Alu -6 306 1 248 125 25 0 chr6 65634999 65635039 -123644515 + Alu SINE Alu 109 149 -17 844 107 0 0 chr6 65635056 65635168 -123644386 - AluSq/x SINE Alu -201 112 1 844 170 105 29 chr6 65635172 65635343 -123644211 - MLT1E2 LTR MaLR -440 186 3 946 184 32 32 chr6 65636003 65636221 -123643333 - MER20 DNA MER1_type -1 218 1 973 196 0 0 chr6 65637617 65637780 -123641774 - AluJb SINE Alu -17 295 133 2479 185 60 18 chr6 65637789 65638404 -123641150 - Zaphod DNA AcHobo -105 3926 3286 1032 257 125 5 chr6 65638397 65638489 -123641065 - Zaphod DNA AcHobo -3348 683 603 * 2314 92 34 0 chr6 65638489 65638782 -123640772 + AluSg SINE Alu 1 303 -7 1032 257 125 5 chr6 65638782 65639155 -123640399 - Zaphod DNA AcHobo -3428 603 114 763 223 52 61 chr6 65639243 65639656 -123639898 + MLT1D LTR MaLR 1 364 -1 789 249 0 11 chr6 65639716 65639905 -123639649 - MIR SINE MIR -28 234 48 203 147 0 0 chr6 65640541 65640575 -123638979 + (TG)n Simple_repeat Simple_repeat 1 34 0 384 77 0 0 chr6 65641821 65641873 -123637681 + (TTCA)n Simple_repeat Simple_repeat 4 55 0 258 255 186 25 chr6 65641915 65642076 -123637478 - L2 LINE L2 -82 3231 3045 396 187 13 0 chr6 65642087 65642162 -123637392 + MER53 DNA DNA 2 77 -112 2564 117 8 0 chr6 65642174 65642541 -123637013 - L1PB1 LINE L1 0 6151 5782 328 276 23 0 chr6 65642541 65642628 -123636926 - L1MC4 LINE L1 -1340 6702 6614 2215 107 3 13 chr6 65642645 65642954 -123636600 - AluSx SINE Alu -6 306 1 3160 69 12 7 chr6 65642957 65643375 -123636179 - L1P5 LINE L1 -364 5787 5368 577 147 29 0 chr6 65643385 65643487 -123636067 - MER53 DNA DNA -62 127 23 346 261 62 90 chr6 65643538 65643749 -123635805 - L2 LINE L2 -346 2968 2764 1953 146 3 7 chr6 65644641 65644942 -123634612 - AluJb SINE Alu -10 302 3 312 225 90 11 chr6 65644984 65645073 -123634481 - MIR SINE MIR -116 146 51 501 250 26 32 chr6 65645324 65645480 -123634074 - L1ME4a LINE L1 -11 6110 5956 22 0 0 0 chr6 65645672 65645694 -123633860 + AT_rich Low_complexity Low_complexity 1 22 0 2274 112 0 31 chr6 65645701 65646023 -123633531 + AluSx SINE Alu 1 312 0 378 281 201 23 chr6 65647240 65647576 -123631978 - L2 LINE L2 -179 3134 2741 191 258 81 0 chr6 65647993 65648055 -123631499 - MIR SINE MIR -139 123 57 2217 136 29 29 chr6 65648078 65648453 -123631101 + THE1C LTR MaLR 1 375 0 375 267 92 42 chr6 65648506 65648626 -123630928 - L2 LINE L2 -1 3271 3146 555 292 124 24 chr6 65648943 65649241 -123630313 + HsTC2 DNA Tc2 492 819 -1079 2131 128 0 0 chr6 65649617 65649913 -123629641 - AluSx SINE Alu -16 296 1 334 246 0 0 chr6 65650308 65650369 -123629185 + MIR SINE MIR 89 149 -59 280 252 160 0 chr6 65651237 65651356 -123628198 - MIR3 SINE MIR -6 202 65 457 289 75 16 chr6 65651610 65651797 -123627757 - MIR SINE MIR -2 260 63 2104 109 3 17 chr6 65652054 65652347 -123627207 - AluSx SINE Alu -23 289 1 2271 75 10 39 chr6 65652505 65652810 -123626744 + AluY SINE Alu 2 297 -14 257 333 17 61 chr6 65653497 65653677 -123625877 + L2 LINE L2 2925 3096 -176 251 345 87 19 chr6 65654530 65654736 -123624818 + L3 LINE CR1 208 427 -1150 471 230 135 65 chr6 65654802 65655002 -123624552 - MIR SINE MIR -26 236 23 22 0 0 0 chr6 65655283 65655305 -123624249 + AT_rich Low_complexity Low_complexity 1 22 0 1072 195 5 24 chr6 65656002 65656212 -123623342 - AluJo SINE Alu -19 293 88 1005 166 0 24 chr6 65656213 65656382 -123623172 + MER58B DNA MER1_type 171 335 -6 239 317 125 17 chr6 65659726 65659846 -123619708 + L2 LINE L2 3140 3272 0 2255 89 0 0 chr6 65660581 65660862 -123618692 + AluSc SINE Alu 1 281 -28 659 183 38 30 chr6 65660939 65661070 -123618484 - FLAM_A SINE Alu -1 132 1 182 139 83 0 chr6 65661577 65661613 -123617941 + MIR SINE MIR 116 154 -108 932 138 0 0 chr6 65661617 65661747 -123617807 - FLAM_C SINE Alu -2 131 2 212 299 69 11 chr6 65662270 65662357 -123617197 + MIR SINE MIR 18 109 -99 257 273 91 0 chr6 65663318 65663417 -123616137 + MIR SINE MIR 26 133 -75 836 179 89 34 chr6 65665937 65666116 -123613438 - MER5A DNA MER1_type 0 189 1 376 234 190 36 chr6 65666734 65666871 -123612683 + MIR3 SINE MIR 23 180 -28 245 351 140 29 chr6 65668151 65668322 -123611232 + L2 LINE L2 2724 2913 -401 296 381 60 8 chr6 65668337 65668471 -123611083 + MIR3 SINE MIR 5 145 -63 262 374 54 81 chr6 65668566 65668900 -123610654 + L2 LINE L2 2946 3270 -2 1902 153 0 7 chr6 65669912 65670206 -123609348 - AluJb SINE Alu -20 292 1 249 268 170 0 chr6 65670682 65670794 -123608760 - MIR3 SINE MIR -48 160 30 236 274 0 53 chr6 65672407 65672502 -123607052 + L1MEd LINE L1 3 92 -6027 355 254 145 15 chr6 65672885 65673189 -123606365 + L1MEd LINE L1 895 1628 -862 1782 174 0 0 chr6 65673335 65673610 -123605944 + AluJo SINE Alu 1 275 -37 22 0 0 0 chr6 65673613 65673635 -123605919 + AT_rich Low_complexity Low_complexity 1 22 0 5737 144 30 27 chr6 65673916 65674878 -123604676 + Tigger1 DNA MER2_type 1 965 -1453 1741 187 10 7 chr6 65674907 65675217 -123604337 - AluJo SINE Alu -1 311 1 995 151 48 21 chr6 65675217 65675403 -123604151 + Tigger1 DNA MER2_type 2223 2413 -5 1875 157 0 16 chr6 65675591 65675897 -123603657 + AluJo SINE Alu 1 301 -11 26 82 0 0 chr6 65676325 65676386 -123603168 + AT_rich Low_complexity Low_complexity 1 61 0 1763 158 42 0 chr6 65678095 65678380 -123601174 + AluJb SINE Alu 1 297 -15 195 291 100 36 chr6 65678581 65678691 -123600863 + MIR3 SINE MIR 83 199 -9 2304 83 7 3 chr6 65678748 65679050 -123600504 + AluSq SINE Alu 1 303 -10 25 31 0 0 chr6 65681278 65681310 -123598244 + AT_rich Low_complexity Low_complexity 1 32 0 2162 139 0 0 chr6 65681820 65682129 -123597425 + AluSx SINE Alu 1 309 -3 2170 135 0 0 chr6 65682617 65682929 -123596625 - AluSx SINE Alu 0 312 1 1052 276 105 26 chr6 65683497 65683964 -123595590 + MLT1L LTR MaLR 94 597 -18 384 337 88 0 chr6 65684042 65684247 -123595307 - L1MC/D LINE L1 -2032 5776 5554 21 57 0 0 chr6 65685499 65685534 -123594020 + AT_rich Low_complexity Low_complexity 1 35 0 372 254 24 53 chr6 65685729 65685898 -123593656 - MER112 DNA MER1_type -89 171 8 2601 181 96 22 chr6 65686598 65687107 -123592447 + MER44D DNA MER2_type 1 602 -3 604 211 154 62 chr6 65687743 65687951 -123591603 + MIR SINE MIR 26 252 -10 387 215 54 32 chr6 65688063 65688156 -123591398 - MER20B DNA MER1_type -631 152 58 181 287 92 23 chr6 65688876 65688963 -123590591 + L3b LINE CR1 1360 1452 -131 487 297 173 26 chr6 65689629 65690016 -123589538 - L2 LINE L2 -1 3312 2869 186 43 0 0 chr6 65693694 65693717 -123585837 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 288 0 0 0 chr6 65693748 65693780 -123585774 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 6093 61 27 63 chr6 65693780 65695576 -123583978 - SVA Other Other -589 1363 1 505 15 0 102 chr6 65695576 65695713 -123583841 + (GGGAGA)n Simple_repeat Simple_repeat 1 123 0 269 290 50 30 chr6 65696410 65696510 -123583044 - L2 LINE L2 0 3272 3171 1131 191 68 0 chr6 65696569 65696804 -123582750 + MIR SINE MIR 12 262 0 232 305 80 46 chr6 65697627 65697778 -123581776 + L2 LINE L2 3117 3272 0 354 302 107 13 chr6 65697826 65697985 -123581569 - MER5B DNA MER1_type -4 174 1 252 287 96 21 chr6 65698474 65698568 -123580986 + L2 LINE L2 3160 3260 -12 180 0 0 0 chr6 65698609 65698629 -123580925 + (CTG)n Simple_repeat Simple_repeat 3 22 0 1523 210 135 57 chr6 65698831 65699326 -123580228 + MLT1F LTR MaLR 1 534 -8 282 283 26 118 chr6 65699642 65699713 -123579841 - MIR SINE MIR -114 148 97 422 298 58 0 chr6 65699713 65699817 -123579737 + MER81 DNA DNA 1 110 -4 282 283 26 118 chr6 65699817 65699897 -123579657 - MIR SINE MIR -165 97 11 760 129 8 40 chr6 65699928 65700052 -123579502 - FLAM_C SINE Alu -13 120 1 3255 176 38 8 chr6 65700590 65701197 -123578357 + L1MB7 LINE L1 5445 6069 -115 265 220 110 20 chr6 65701268 65701368 -123578186 + L1ME LINE L1 5627 5735 -386 2826 174 109 10 chr6 65701470 65702058 -123577496 + L1MD1 LINE L1 5597 6242 0 1712 141 37 40 chr6 65702675 65702973 -123576581 - AluJo SINE Alu -15 297 1 219 265 29 44 chr6 65703840 65703908 -123575646 - L2 LINE L2 -6 3266 3200 23 33 0 0 chr6 65704020 65704050 -123575504 + AT_rich Low_complexity Low_complexity 1 30 0 1639 191 34 48 chr6 65704343 65704721 -123574833 - MLT1A2 LTR MaLR -1 373 1 556 224 7 35 chr6 65705278 65705421 -123574133 + MIR SINE MIR 84 222 -40 188 291 94 82 chr6 65705494 65705738 -123573816 - L2 LINE L2 -47 3266 3020 4124 65 2 2 chr6 65706621 65707116 -123572438 + L1PA4 LINE L1 5658 6152 -3 260 125 0 18 chr6 65707119 65707175 -123572379 + (TAAAA)n Simple_repeat Simple_repeat 1 55 0 209 310 305 0 chr6 65707257 65707457 -123572097 - MIR SINE MIR 0 262 2 207 240 209 101 chr6 65707623 65707752 -123571802 + MIR SINE MIR 85 227 -35 22 80 0 0 chr6 65707759 65707809 -123571745 + AT_rich Low_complexity Low_complexity 1 50 0 1280 162 0 26 chr6 65707847 65708081 -123571473 + AluJb SINE Alu 85 312 0 991 152 73 131 chr6 65708134 65708313 -123571241 - Charlie5 DNA MER1_type -94 2530 2342 2521 43 40 0 chr6 65708313 65708612 -123570942 + AluYa5 SINE Alu 1 311 0 991 152 73 131 chr6 65708612 65708842 -123570712 - Charlie5 DNA MER1_type -282 2342 1 1861 150 7 10 chr6 65709343 65709636 -123569918 + AluSx SINE Alu 1 292 -20 2244 73 45 0 chr6 65709646 65709934 -123569620 - AluY SINE Alu -10 301 1 491 259 32 25 chr6 65710712 65710870 -123568684 - L1ME LINE L1 -350 5771 5613 314 291 47 0 chr6 65712277 65712363 -123567191 - MIR SINE MIR -1 261 172 186 267 22 0 chr6 65712396 65712441 -123567113 - MIR SINE MIR -200 62 17 2101 81 44 14 chr6 65712888 65713185 -123566369 - AluSp SINE Alu -7 306 1 2238 131 0 3 chr6 65713281 65713594 -123565960 + AluSx SINE Alu 1 312 0 1960 140 13 3 chr6 65713705 65714013 -123565541 + AluJb SINE Alu 1 311 -1 1915 144 39 21 chr6 65716681 65717014 -123562540 + L1MB5 LINE L1 5835 6173 -1 513 268 64 6 chr6 65717464 65717621 -123561933 - MER3 DNA MER1_type -1 208 43 312 91 0 0 chr6 65718493 65718537 -123561017 + (CTA)n Simple_repeat Simple_repeat 3 46 0 505 172 69 59 chr6 65718579 65718782 -123560772 + Charlie1 DNA MER1_type 2523 2727 -34 2146 141 3 0 chr6 65718853 65719165 -123560389 + AluSq SINE Alu 1 313 0 2687 138 74 40 chr6 65719330 65719829 -123559725 - Tigger3b DNA MER2_type -5 1227 712 967 131 88 0 chr6 65719829 65719989 -123559565 - FAM SINE Alu -3 46 1 3434 145 97 24 chr6 65719998 65720367 -123559187 - Tigger3b DNA MER2_type -2309 719 378 1608 194 14 0 chr6 65720367 65720656 -123558898 + AluJo SINE Alu 9 301 -11 3434 145 97 24 chr6 65720656 65720955 -123558599 - Tigger3b DNA MER2_type -2650 378 2 2233 171 74 17 chr6 65721100 65721503 -123558051 - MSTB LTR MaLR 0 426 1 240 295 11 21 chr6 65721870 65721965 -123557589 + GA-rich Low_complexity Low_complexity 1 94 0 21 0 0 0 chr6 65723121 65723142 -123556412 + AT_rich Low_complexity Low_complexity 1 21 0 29 70 0 0 chr6 65723718 65723775 -123555779 + AT_rich Low_complexity Low_complexity 1 57 0 307 279 125 29 chr6 65724260 65724396 -123555158 + MIR3 SINE MIR 37 185 -23 607 207 80 48 chr6 65725027 65725215 -123554339 + MLT1J LTR MaLR 69 262 -249 312 213 66 118 chr6 65725270 65725406 -123554148 + MLT1J LTR MaLR 383 511 0 1548 195 0 11 chr6 65725689 65725966 -123553588 + AluJb SINE Alu 1 274 -38 185 294 0 0 chr6 65726999 65727050 -123552504 - MIR SINE MIR -34 228 178 4140 116 66 124 chr6 65728831 65729593 -123549961 + Tigger3(Golem) DNA MER2_type 2 807 -2222 601 188 129 0 chr6 65729593 65729694 -123549860 - FLAM_C SINE Alu -24 119 6 4140 116 66 124 chr6 65729694 65730137 -123549417 + Tigger3(Golem) DNA MER2_type 807 3028 -1 932 222 72 9 chr6 65730715 65730936 -123548618 + MIR SINE MIR 1 235 -27 371 264 71 45 chr6 65730944 65731099 -123548455 - L1MC4a LINE L1 -1960 5848 5690 257 258 33 83 chr6 65731185 65731305 -123548249 - MIR SINE MIR -90 172 59 1921 176 0 0 chr6 65732518 65732824 -123546730 - AluJb SINE Alu -6 306 1 304 202 143 0 chr6 65733329 65733413 -123546141 - HsTC2 DNA Tc2 -1802 96 1 281 284 200 19 chr6 65733873 65734028 -123545526 + MIR SINE MIR 80 262 0 296 103 23 3 chr6 65734631 65734682 -123544872 + MLT1L LTR MaLR 538 608 0 233 178 87 189 chr6 65735149 65735206 -123544348 + MIR SINE MIR 79 140 -122 4175 58 2 0 chr6 65735206 65735705 -123543849 - L1PA8 LINE L1 -1 6171 5672 233 178 87 189 chr6 65735705 65735832 -123543722 + MIR SINE MIR 140 244 -18 201 318 149 7 chr6 65736236 65736384 -123543170 - MIR SINE MIR -10 252 84 2561 81 0 0 chr6 65739166 65739476 -123540078 - AluSx SINE Alu -2 310 1 242 308 0 15 chr6 65740217 65740282 -123539272 - Charlie7 DNA MER1_type -2548 64 1 326 301 35 9 chr6 65740291 65740404 -123539150 + L2 LINE L2 3198 3313 0 2153 92 21 7 chr6 65741076 65741386 -123538168 - AluSq SINE Alu 0 314 1 282 368 34 0 chr6 65742045 65742162 -123537392 + L2 LINE L2 3151 3271 -1 2560 276 57 31 chr6 65742270 65743408 -123536146 + L2 LINE L2 2155 3305 -8 329 326 11 0 chr6 65743878 65743967 -123535587 - MIR SINE MIR -128 134 45 1235 223 44 27 chr6 65745376 65745672 -123533882 - AluJb SINE Alu -11 301 1 2077 141 0 0 chr6 65745702 65746000 -123533554 - AluSx SINE Alu -14 298 1 271 254 172 37 chr6 65746147 65746281 -123533273 + L2 LINE L2 3152 3303 -10 1232 267 78 80 chr6 65746415 65746954 -123532600 + MLT1E LTR MaLR 4 592 -1 237 309 111 41 chr6 65747868 65748111 -123531443 + L2 LINE L2 2994 3253 -60 891 166 6 0 chr6 65748128 65748285 -123531269 - FRAM SINE Alu -9 167 10 33 43 0 0 chr6 65748720 65748767 -123530787 + GC_rich Low_complexity Low_complexity 1 47 0 281 69 0 69 chr6 65749593 65749651 -123529903 + (A)n Simple_repeat Simple_repeat 1 54 0 296 276 86 46 chr6 65749704 65749856 -123529698 - MIR SINE MIR -71 191 34 1760 137 72 33 chr6 65749858 65750303 -123529251 - MER51A LTR ERV1 -16 618 72 2251 100 3 3 chr6 65750303 65750613 -123528941 - AluSg SINE Alu 0 310 1 1760 137 72 33 chr6 65750613 65750688 -123528866 - MER51A LTR ERV1 -562 72 1 328 295 169 16 chr6 65751441 65751695 -123527859 + L2 LINE L2 2668 2960 -354 6986 154 137 34 chr6 65751780 65753321 -123526233 - pTR5 LTR ERV1 0 2438 740 364 383 85 0 chr6 65753508 65753649 -123525905 + L2 LINE L2 3117 3269 -3 797 192 0 20 chr6 65753769 65753915 -123525639 - FLAM_C SINE Alu 0 143 1 675 142 25 17 chr6 65753939 65754059 -123525495 + MER3 DNA MER1_type 43 163 -46 1048 161 88 35 chr6 65754064 65754292 -123525262 + MER3 DNA MER1_type 2280 2494 -130 3104 126 26 56 chr6 65754292 65754434 -123525120 + L1MB4 LINE L1 5628 5773 -407 1925 134 105 37 chr6 65754434 65754602 -123524952 - THE1C LTR MaLR 0 375 220 180 0 0 0 chr6 65754602 65754622 -123524932 + (GA)n Simple_repeat Simple_repeat 2 21 0 1925 134 105 37 chr6 65754622 65754804 -123524750 - THE1C LTR MaLR -155 220 1 10448 135 6 49 chr6 65754804 65755975 -123523579 - THE1C-int LTR MaLR 0 1580 500 2296 91 0 17 chr6 65755975 65756273 -123523281 - AluSq SINE Alu -20 293 1 10448 135 6 49 chr6 65756273 65756751 -123522803 - THE1C-int LTR MaLR -1080 500 3 3104 126 26 56 chr6 65756751 65756770 -123522784 + L1MB4 LINE L1 5772 5790 -390 2511 90 0 0 chr6 65756770 65757081 -123522473 - AluY SINE Alu 0 311 1 2026 133 63 41 chr6 65757081 65757448 -123522106 - THE1C LTR MaLR 0 375 1 3104 126 26 56 chr6 65757448 65757853 -123521701 + L1MB4 LINE L1 5788 6180 0 1048 161 88 35 chr6 65757853 65757885 -123521669 + MER3 DNA MER1_type 2494 2554 -70 281 103 0 0 chr6 65757901 65757940 -123521614 + THE1-int LTR MaLR 752 790 -790 812 73 28 45 chr6 65758412 65758590 -123520964 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 225 196 0 0 chr6 65758579 65758625 -123520929 + CT-rich Low_complexity Low_complexity 3 48 0 * 1906 155 7 7 chr6 65758625 65758934 -123520620 - AluSx SINE Alu -3 309 1 2334 105 3 0 chr6 65760300 65760606 -123518948 + AluSq SINE Alu 1 307 -6 944 150 0 0 chr6 65761201 65761334 -123518220 + FLAM_A SINE Alu 1 133 0 2452 88 0 0 chr6 65761340 65761648 -123517906 + AluSg SINE Alu 1 308 -2 203 395 23 0 chr6 65762465 65762551 -123517003 + MER5A DNA MER1_type 64 151 -38 255 307 94 0 chr6 65763072 65763199 -123516355 - MIR SINE MIR -53 209 71 387 259 28 9 chr6 65763755 65763863 -123515691 - L2 LINE L2 -1 3312 3203 33 56 0 0 chr6 65764986 65765040 -123514514 + AT_rich Low_complexity Low_complexity 1 54 0 1014 161 6 0 chr6 65766249 65766411 -123513143 - AluSg/x SINE Alu -20 292 130 2151 133 0 0 chr6 65768287 65768589 -123510965 - AluSx SINE Alu -7 305 4 505 336 80 8 chr6 65769018 65769256 -123510298 - MIR SINE MIR 0 262 8 241 301 118 20 chr6 65769610 65769856 -123509698 + L1MC/D LINE L1 3743 4012 -2134 2097 136 0 13 chr6 65769880 65770189 -123509365 - AluSx SINE Alu -7 305 1 2084 104 14 0 chr6 65770221 65770500 -123509054 + AluSp SINE Alu 11 293 -20 302 179 54 0 chr6 65770625 65770681 -123508873 + L2 LINE L2 3251 3309 -4 320 326 90 0 chr6 65770691 65770835 -123508719 + L1MC/D LINE L1 4159 4315 -1831 39824 77 7 9 chr6 65772052 65775028 -123504526 + L1PA6 LINE L1 13 2996 -3158 2530 63 0 0 chr6 65775028 65775330 -123504224 - AluY SINE Alu -9 302 1 39824 77 7 9 chr6 65775330 65778511 -123501043 + L1PA6 LINE L1 2996 6154 0 225 324 135 0 chr6 65778808 65778919 -123500635 + L1MC/D LINE L1 5564 5689 -2119 180 111 0 0 chr6 65779032 65779059 -123500495 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1399 173 98 4 chr6 65779061 65779316 -123500238 - AluSg SINE Alu -31 279 1 222 150 0 0 chr6 65779358 65779398 -123500156 + (CA)n Simple_repeat Simple_repeat 1 40 0 419 252 144 0 chr6 65779449 65779560 -123499994 - FLAM_A SINE Alu -14 128 2 2159 122 3 0 chr6 65780286 65780580 -123498974 - AluSx SINE Alu -17 295 1 287 258 217 8 chr6 65780762 65780882 -123498672 + L1MC/D LINE L1 5701 5845 -1963 1448 158 4 20 chr6 65781287 65781533 -123498021 + L1MA10 LINE L1 5347 5588 -580 4557 160 64 48 chr6 65781540 65782345 -123497209 - MER21A LTR ERV1 -6 925 103 354 23 0 0 chr6 65782345 65782388 -123497166 + (GA)n Simple_repeat Simple_repeat 2 44 0 4557 160 64 48 chr6 65782388 65782469 -123497085 - MER21A LTR ERV1 -828 103 25 336 24 0 0 chr6 65782469 65782510 -123497044 + (TC)n Simple_repeat Simple_repeat 1 41 0 4053 141 33 48 chr6 65782523 65783273 -123496281 + L1MA10 LINE L1 5586 6324 -10 2246 112 0 7 chr6 65783291 65783596 -123495958 + AluSx SINE Alu 1 303 -9 285 274 167 39 chr6 65783617 65783733 -123495821 - L1ME4a LINE L1 -138 5983 5883 1537 185 32 7 chr6 65783733 65784014 -123495540 + AluJo SINE Alu 5 292 -20 285 274 167 39 chr6 65784014 65784101 -123495453 - L1ME4a LINE L1 -238 5883 5754 514 229 0 38 chr6 65784420 65784551 -123495003 + L2 LINE L2 3171 3296 -17 286 293 68 80 chr6 65785050 65785557 -123493997 - L2 LINE L2 -160 3112 2614 2799 181 62 17 chr6 65786370 65786890 -123492664 - MER67A LTR ERV1 0 543 1 3167 222 59 47 chr6 65787631 65789165 -123490389 - L1ME2 LINE L1 0 6164 4615 44551 43 1 5 chr6 65789365 65795540 -123484014 - L1PA4 LINE L1 -1 6154 1 181 242 48 97 chr6 65795927 65796051 -123483503 + L2 LINE L2 2290 2407 -907 454 323 104 100 chr6 65796241 65797245 -123482309 - L2 LINE L2 -1 3271 2242 298 315 83 28 chr6 65797809 65797917 -123481637 - L2 LINE L2 -1 3271 3158 515 267 23 8 chr6 65797926 65798057 -123481497 + MER5B DNA MER1_type 2 134 -44 496 254 39 73 chr6 65798068 65798379 -123481175 - L1MC5 LINE L1 -51 7910 7619 2277 103 3 3 chr6 65798379 65798680 -123480874 - AluSx SINE Alu -9 303 3 496 254 39 73 chr6 65798680 65798836 -123480718 - L1MC5 LINE L1 -342 7619 7459 225 0 0 0 chr6 65798836 65798861 -123480693 + (T)n Simple_repeat Simple_repeat 1 25 0 3817 175 35 106 chr6 65798871 65799378 -123480176 - Tigger5 DNA MER2_type -1260 1063 680 2351 99 0 0 chr6 65799378 65799682 -123479872 + AluSc SINE Alu 1 304 -5 3817 175 35 106 chr6 65799682 65800318 -123479236 - Tigger5 DNA MER2_type -1643 680 1 570 253 36 26 chr6 65800331 65800525 -123479029 + L1MC5 LINE L1 6615 6810 -1151 557 258 17 11 chr6 65800496 65800674 -123478880 + L1MC5 LINE L1 7030 7208 -753 * 1711 180 72 24 chr6 65801119 65801492 -123478062 - MSTD LTR MaLR -4 392 2 443 316 42 0 chr6 65802127 65802320 -123477234 - L1MC/D LINE L1 -2059 5749 5549 283 246 0 0 chr6 65802320 65802381 -123477173 - MER5B DNA MER1_type -116 62 2 478 339 22 6 chr6 65803173 65803356 -123476198 + L2 LINE L2 2877 3062 -251 1104 163 12 98 chr6 65803394 65803616 -123475938 - MER33 DNA MER1_type -2283 302 115 2087 144 20 0 chr6 65803616 65803922 -123475632 - AluSx SINE Alu 0 312 1 1104 163 12 98 chr6 65803922 65804025 -123475529 - MER33 DNA MER1_type -2470 115 5 429 287 43 57 chr6 65804061 65804270 -123475284 + L2 LINE L2 3108 3313 0 269 256 156 11 chr6 65804516 65804606 -123474948 + MIR SINE MIR 13 115 -147 263 337 0 10 chr6 65804605 65804703 -123474851 + MER5A DNA MER1_type 90 186 -3 * 270 281 11 22 chr6 65804825 65804914 -123474640 - 7SK RNA RNA -100 93 6 533 183 0 0 chr6 65805159 65805241 -123474313 - FLAM_A SINE Alu -59 83 2 233 329 0 93 chr6 65805242 65805382 -123474172 + L1MB3 LINE L1 5511 5637 -2171 1480 169 29 73 chr6 65805422 65805835 -123473719 + L1MB3 LINE L1 5785 6179 -4 552 262 43 18 chr6 65805840 65806004 -123473550 + L1MC4a LINE L1 5680 5847 -1961 283 296 0 0 chr6 65806143 65806224 -123473330 + LTR33 LTR ERVL 197 277 -244 568 299 98 57 chr6 65806314 65807025 -123472529 + ERVL LTR ERVL 1248 1970 -3684 752 224 11 29 chr6 65807025 65807199 -123472355 + FRAM SINE Alu 1 168 -8 910 328 40 23 chr6 65807214 65807686 -123471868 + ERVL LTR ERVL 2020 2499 -3265 227 165 71 94 chr6 65808087 65808172 -123471382 + MLT1J LTR MaLR 353 435 -76 1164 137 0 12 chr6 65808172 65808340 -123471214 + AluJo SINE Alu 21 186 -126 1991 316 71 9 chr6 65808505 65809452 -123470102 + ERVL LTR ERVL 3641 4645 -1119 313 391 6 0 chr6 65809520 65809681 -123469873 + ERVL LTR ERVL 4761 4922 -842 445 301 7 0 chr6 65809915 65810068 -123469486 + ERVL LTR ERVL 5227 5380 -384 2208 168 62 19 chr6 65810127 65810596 -123468958 - L1MB7 LINE L1 -14 6170 5682 3445 169 18 37 chr6 65810685 65811067 -123468487 - L1MB7 LINE L1 -493 5691 5303 2173 126 31 0 chr6 65811067 65811361 -123468193 - AluSx SINE Alu -7 305 3 3445 169 18 37 chr6 65811361 65812113 -123467441 - L1MB7 LINE L1 -881 5303 4573 1733 283 36 2 chr6 65812300 65812795 -123466759 + LTR33 LTR ERVL 2 513 -8 1758 162 14 7 chr6 65812998 65813430 -123466124 - AluJb SINE Alu 0 454 21 689 262 171 44 chr6 65813430 65813816 -123465738 - MLT1J LTR MaLR -76 435 1 1455 220 132 20 chr6 65814189 65814630 -123464924 - MLT1E2 LTR MaLR 0 626 137 615 176 0 8 chr6 65814655 65814780 -123464774 + L1 LINE L1 4792 4915 -1231 527 122 0 0 chr6 65814789 65814871 -123464683 - AluS SINE Alu -230 82 1 2082 76 4 4 chr6 65815027 65815291 -123464263 + AluSc SINE Alu 1 264 -45 30 45 0 0 chr6 65815317 65815361 -123464193 + AT_rich Low_complexity Low_complexity 1 44 0 294 271 65 126 chr6 65815426 65815640 -123463914 - MIR SINE MIR -8 254 54 342 261 46 35 chr6 65815688 65815922 -123463632 - L1M4c LINE L1 -4436 2127 1736 262 154 0 0 chr6 65815935 65815974 -123463580 - MIR SINE MIR -138 70 32 426 62 0 0 chr6 65816261 65816325 -123463229 + L1PA2 LINE L1 6092 6155 0 23 54 0 0 chr6 65816750 65816787 -123462767 + AT_rich Low_complexity Low_complexity 1 37 0 1328 246 125 67 chr6 65817054 65818071 -123461483 - HAL1b LINE L1 -1 1347 272 186 330 47 52 chr6 65818542 65818733 -123460821 - L2 LINE L2 -256 3016 2827 364 308 65 5 chr6 65819014 65819228 -123460326 + L1MA4 LINE L1 5659 5885 -415 * 1393 211 34 31 chr6 65819048 65819465 -123460089 + L1ME1 LINE L1 5697 6114 -52 570 224 46 0 chr6 65819360 65819512 -123460042 + L1MA10 LINE L1 6169 6327 -7 * 236 277 125 9 chr6 65819622 65819734 -123459820 - L2 LINE L2 -1097 2217 2093 1238 256 60 7 chr6 65819743 65820157 -123459397 - L1MC/D LINE L1 -2009 5799 5364 287 302 67 31 chr6 65820182 65820603 -123458951 - L1MC/D LINE L1 -830 5316 4881 788 194 45 124 chr6 65820677 65821032 -123458522 + MLT1A1 LTR MaLR 39 365 0 1583 204 11 14 chr6 65821141 65821489 -123458065 - MLT1A1 LTR MaLR -18 347 1 1796 184 0 13 chr6 65821624 65821939 -123457615 + AluJb SINE Alu 1 311 -1 2342 71 0 3 chr6 65824362 65824656 -123454898 - AluY SINE Alu -18 293 1 180 0 0 0 chr6 65824975 65824995 -123454559 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2398 103 0 0 chr6 65825029 65825339 -123454215 + AluSx SINE Alu 1 310 -2 456 295 23 0 chr6 65825509 65825638 -123453916 - MER94 DNA DNA -2 132 1 24 0 0 0 chr6 65826120 65826144 -123453410 + AT_rich Low_complexity Low_complexity 1 24 0 342 326 35 42 chr6 65826246 65826390 -123453164 + MIR3 SINE MIR 2 144 -64 610 270 108 25 chr6 65826408 65826622 -123452932 - MIR SINE MIR -10 252 34 601 299 137 27 chr6 65826635 65826970 -123452584 + LTR33 LTR ERVL 40 411 -110 356 305 109 70 chr6 65827284 65827641 -123451913 + L2 LINE L2 2924 3294 -19 1861 156 10 3 chr6 65828564 65828853 -123450701 - AluJb SINE Alu -21 291 1 23 68 0 0 chr6 65829964 65830008 -123449546 + AT_rich Low_complexity Low_complexity 1 44 0 705 270 95 8 chr6 65830877 65831120 -123448434 - L1ME LINE L1 -375 5746 5526 815 272 97 26 chr6 65831120 65831502 -123448052 - MLT1I LTR MaLR 0 409 1 705 270 95 8 chr6 65831502 65831681 -123447873 - L1ME LINE L1 -595 5526 5283 249 224 0 0 chr6 65831848 65831906 -123447648 + MLT1H1 LTR MaLR 21 78 -464 324 246 190 39 chr6 65832006 65832311 -123447243 + MLT1H1 LTR MaLR 168 518 -37 524 243 112 40 chr6 65832471 65832623 -123446931 - MIR SINE MIR -99 163 1 2372 79 10 0 chr6 65833379 65833682 -123445872 + AluSp SINE Alu 1 306 -7 265 293 10 20 chr6 65833877 65833976 -123445578 + HAL1 LINE L1 14 111 -2396 2537 138 7 16 chr6 65834771 65835200 -123444354 + MSTB1 LTR MaLR 1 425 -7 197 206 0 29 chr6 65835206 65835274 -123444280 + (CATA)n Simple_repeat Simple_repeat 2 67 0 352 339 136 0 chr6 65835379 65835556 -123443998 + L1M4 LINE L1 4819 5019 -1127 207 236 0 0 chr6 65836132 65836204 -123443350 + (TA)n Simple_repeat Simple_repeat 2 73 0 309 100 0 0 chr6 65836207 65836257 -123443297 - MSTB1 LTR MaLR -13 419 370 271 235 84 19 chr6 65836916 65837063 -123442491 + L1M2 LINE L1 5314 5443 -857 1448 166 15 41 chr6 65837959 65838230 -123441324 - AluJo SINE Alu -15 297 34 367 231 261 0 chr6 65838447 65838581 -123440973 - MIR SINE MIR -13 249 81 215 395 57 8 chr6 65838681 65838805 -123440749 + L2 LINE L2 2643 2772 -542 870 181 28 23 chr6 65838816 65838993 -123440561 + MER5A DNA MER1_type 3 180 -9 936 266 4 30 chr6 65839124 65839357 -123440197 + MIR SINE MIR 2 228 -34 2359 103 0 0 chr6 65839357 65839657 -123439897 + AluSx SINE Alu 1 300 -12 1066 227 177 35 chr6 65839708 65840131 -123439423 - MLT1D LTR MaLR 0 505 23 928 114 0 0 chr6 65840134 65840257 -123439297 + FLAM_C SINE Alu 5 127 -6 257 284 17 26 chr6 65840334 65840450 -123439104 + L2 LINE L2 2970 3084 -188 285 167 0 0 chr6 65840456 65840510 -123439044 + (CA)n Simple_repeat Simple_repeat 1 54 0 5335 141 37 25 chr6 65840512 65841765 -123437789 - L1MC2 LINE L1 -22 6322 5058 313 179 0 13 chr6 65841813 65841891 -123437663 - L1MC2 LINE L1 -1083 5063 4987 2004 141 0 7 chr6 65843389 65843679 -123435875 + AluSx SINE Alu 4 291 -21 1090 103 6 39 chr6 65843782 65843938 -123435616 - AluSg SINE Alu -159 151 1 438 225 63 9 chr6 65844030 65844141 -123435413 + MER45 DNA AcHobo 1 117 -836 189 74 0 0 chr6 65844145 65844172 -123435382 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 743 149 9 0 chr6 65844176 65844290 -123435264 - FLAM_C SINE Alu -16 117 3 294 286 0 12 chr6 65844611 65844695 -123434859 - MER94 DNA DNA -27 107 25 25 31 0 0 chr6 65845223 65845255 -123434299 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr6 65845272 65845295 -123434259 + (TG)n Simple_repeat Simple_repeat 2 24 0 271 183 83 0 chr6 65845947 65846007 -123433547 + MER53 DNA DNA 1 65 -124 1232 139 5 9 chr6 65846037 65846253 -123433301 - L1MA3 LINE L1 -1 6304 6090 6290 153 6 14 chr6 65846254 65846495 -123433059 - L1 LINE L1 -1353 6212 5970 1799 166 3 26 chr6 65846495 65846808 -123432746 - AluSx SINE Alu -6 306 1 6290 153 6 14 chr6 65846808 65847748 -123431806 - L1 LINE L1 -1595 5970 5041 784 178 57 0 chr6 65847730 65847887 -123431667 - L1 LINE L1 -7394 171 6 * 897 206 23 32 chr6 65848027 65848246 -123431308 - MLT1C LTR MaLR 0 467 251 435 238 210 0 chr6 65848799 65848942 -123430612 - MIR SINE MIR -60 202 30 232 314 76 17 chr6 65850176 65850294 -123429260 - MIR SINE MIR -11 251 127 562 100 0 0 chr6 65850488 65850568 -123428986 + MADE1 DNA Mariner 1 80 0 2142 158 98 13 chr6 65851037 65851485 -123428069 + L1MB5 LINE L1 5689 6174 0 222 37 0 0 chr6 65852396 65852423 -123427131 + (TG)n Simple_repeat Simple_repeat 1 27 0 2205 118 0 3 chr6 65852915 65853221 -123426333 + AluSx SINE Alu 1 305 -7 197 108 27 0 chr6 65854246 65854283 -123425271 + GA-rich Low_complexity Low_complexity 4 41 0 1733 247 103 64 chr6 65854809 65855062 -123424492 + L1MC5 LINE L1 5694 5936 -2025 1802 169 3 26 chr6 65855062 65855370 -123424184 + AluJb SINE Alu 3 303 -9 1733 247 103 64 chr6 65855370 65856119 -123423435 + L1MC5 LINE L1 5936 6655 -1306 1060 207 57 111 chr6 65856119 65856505 -123423049 - MLT1A1 LTR MaLR 0 365 1 1733 247 103 64 chr6 65856505 65857171 -123422383 + L1MC5 LINE L1 6655 7469 -492 987 312 76 13 chr6 65857196 65857657 -123421897 + LTR16C LTR ERVL 2 491 0 668 206 179 25 chr6 65857666 65857725 -123421829 + L1MC5 LINE L1 7498 7547 -414 212 0 36 0 chr6 65857725 65857753 -123421801 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 668 206 179 25 chr6 65857753 65858057 -123421497 + L1MC5 LINE L1 7547 7917 -44 198 287 23 103 chr6 65858096 65858183 -123421371 + L2 LINE L2 3231 3310 -3 1056 158 6 6 chr6 65858777 65858942 -123420612 + FAM SINE Alu 1 165 -10 24 0 0 0 chr6 65859217 65859241 -123420313 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 65859302 65859324 -123420230 + AT_rich Low_complexity Low_complexity 1 22 0 390 275 67 0 chr6 65860323 65860443 -123419111 - MIR SINE MIR -27 235 108 1858 172 0 20 chr6 65862020 65862317 -123417237 - AluSx SINE Alu -21 291 1 26 0 0 0 chr6 65862523 65862549 -123417005 + AT_rich Low_complexity Low_complexity 1 26 0 235 0 28 28 chr6 65863157 65863193 -123416361 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 261 275 50 0 chr6 65864342 65864422 -123415132 - MIR SINE MIR 0 262 179 472 200 174 19 chr6 65865353 65865508 -123414046 - MER58A DNA MER1_type -15 209 31 198 0 0 0 chr6 65865600 65865622 -123413932 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1605 150 0 104 chr6 65865648 65865830 -123413724 - AluJb SINE Alu -9 293 158 2058 112 0 55 chr6 65865830 65866160 -123413394 - AluSx SINE Alu 0 312 1 1605 150 0 104 chr6 65866160 65866303 -123413251 - AluJb SINE Alu -144 158 2 769 179 0 15 chr6 65866307 65866441 -123413113 - FLAM_C SINE Alu -1 132 1 709 222 12 0 chr6 65867046 65867208 -123412346 + MLT1C LTR MaLR 1 164 -226 309 48 0 0 chr6 65867210 65867252 -123412302 + MADE1 DNA Mariner 3 44 -36 2095 130 0 23 chr6 65867289 65867596 -123411958 - AluSq SINE Alu -13 300 1 1052 186 27 125 chr6 65867610 65867938 -123411616 + MLT1C LTR MaLR 165 460 -7 735 277 55 17 chr6 65868624 65868859 -123410695 - MIR SINE MIR -1 261 18 318 290 201 12 chr6 65869166 65869335 -123410219 - MIR SINE MIR -4 258 58 24 53 0 0 chr6 65869501 65869539 -123410015 + AT_rich Low_complexity Low_complexity 1 38 0 1496 122 58 55 chr6 65869545 65869872 -123409682 - L1MA8 LINE L1 -25 6266 5939 411 193 0 0 chr6 65869872 65869955 -123409599 + (TA)n Simple_repeat Simple_repeat 1 83 0 3782 138 35 26 chr6 65869955 65871054 -123408500 - L1MA8 LINE L1 -6 6148 5112 233 342 13 0 chr6 65871150 65871229 -123408325 - MIR SINE MIR -181 81 2 312 254 0 79 chr6 65871969 65872083 -123407471 - MIR SINE MIR -46 216 112 456 19 0 0 chr6 65872553 65872606 -123406948 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 1730 181 35 0 chr6 65873223 65873510 -123406044 - AluJb SINE Alu -15 297 1 25 83 0 0 chr6 65873567 65873627 -123405927 + AT_rich Low_complexity Low_complexity 1 60 0 2044 225 66 21 chr6 65873828 65874413 -123405141 - MLT1E2 LTR MaLR -7 619 3 414 0 0 0 chr6 65874695 65874741 -123404813 + (TG)n Simple_repeat Simple_repeat 1 46 0 2071 125 0 0 chr6 65874741 65875020 -123404534 - AluSx SINE Alu -33 279 1 697 194 90 7 chr6 65875950 65876105 -123403449 + AluJb SINE Alu 138 305 -7 2421 74 60 8 chr6 65877173 65877525 -123402029 + THE1C LTR MaLR 1 370 -5 228 235 20 0 chr6 65877935 65877986 -123401568 + (CA)n Simple_repeat Simple_repeat 2 53 0 360 318 122 19 chr6 65878441 65878655 -123400899 - L2 LINE L2 0 3313 3078 321 307 104 6 chr6 65878724 65878887 -123400667 - LTR33 LTR ERVL -322 199 21 291 227 151 8 chr6 65879696 65879815 -123399739 + MLT1J2 LTR MaLR 5 140 -310 22 0 0 0 chr6 65881174 65881196 -123398358 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 65884123 65884143 -123395411 + (A)n Simple_repeat Simple_repeat 1 20 0 27 29 0 0 chr6 65886176 65886210 -123393344 + AT_rich Low_complexity Low_complexity 1 34 0 269 219 24 73 chr6 65886542 65886624 -123392930 + MIR SINE MIR 99 176 -86 2312 128 0 0 chr6 65888318 65888630 -123390924 - AluSx SINE Alu 0 312 1 250 240 0 20 chr6 65889207 65889307 -123390247 + (TA)n Simple_repeat Simple_repeat 2 99 0 300 273 106 31 chr6 65889493 65889654 -123389900 + L1M4 LINE L1 5061 5233 -913 1907 163 0 19 chr6 65889655 65889962 -123389592 - AluJb SINE Alu -11 301 1 404 256 30 30 chr6 65889972 65890105 -123389449 + MER63A DNA MER1_type 77 209 -1 358 268 16 63 chr6 65890137 65890327 -123389227 - L1MC4a LINE L1 -1909 5899 5719 405 0 0 0 chr6 65890334 65890379 -123389175 + (TG)n Simple_repeat Simple_repeat 2 46 0 521 229 5 53 chr6 65891406 65891594 -123387960 + L1M4 LINE L1 2782 2960 -3186 487 333 26 11 chr6 65891594 65891783 -123387771 + MIR SINE MIR 57 248 -14 204 97 0 0 chr6 65892914 65892945 -123386609 + (TA)n Simple_repeat Simple_repeat 2 32 0 487 242 0 0 chr6 65892949 65893077 -123386477 - L1M4 LINE L1 -3428 2718 2591 2240 110 0 10 chr6 65893255 65893556 -123385998 + AluSx SINE Alu 1 298 -14 619 222 27 93 chr6 65895649 65895874 -123383680 - MIR SINE MIR -4 258 49 785 217 0 0 chr6 65896870 65897050 -123382504 + MER53 DNA DNA 6 185 -4 968 120 13 0 chr6 65898668 65898826 -123380728 + (GAAA)n Simple_repeat Simple_repeat 2 161 0 891 362 95 18 chr6 65899174 65899845 -123379709 + L3 LINE CR1 854 1576 -1 480 197 0 0 chr6 65900106 65900210 -123379344 - FLAM_C SINE Alu 0 145 42 246 83 0 28 chr6 65900762 65900798 -123378756 + L2 LINE L2 3195 3229 -84 1149 233 9 22 chr6 65900801 65901119 -123378435 + MLT1E LTR MaLR 299 555 -38 483 333 115 0 chr6 65901161 65901326 -123378228 - MIR SINE MIR -66 196 13 370 292 69 23 chr6 65901304 65901434 -123378120 + L2 LINE L2 3133 3268 -4 * 798 207 68 55 chr6 65901661 65901732 -123377822 - MER33 DNA MER1_type -2272 313 244 2389 110 0 0 chr6 65901732 65902042 -123377512 + AluSg SINE Alu 1 310 0 798 207 68 55 chr6 65902042 65902279 -123377275 - MER33 DNA MER1_type -2341 244 1 391 252 9 124 chr6 65903276 65903502 -123376052 + LTR67 LTR ERVL 25 224 -333 2336 86 7 3 chr6 65904568 65904869 -123374685 - AluSq SINE Alu -11 302 1 2487 82 0 0 chr6 65905376 65905682 -123373872 + AluY SINE Alu 1 306 -5 186 244 0 0 chr6 65906102 65906143 -123373411 + L2 LINE L2 3215 3255 -17 435 238 210 0 chr6 65907379 65907522 -123372032 + MIR SINE MIR 30 202 -60 909 214 18 32 chr6 65908075 65908295 -123371259 + MLT1C LTR MaLR 251 467 0 784 178 57 0 chr6 65908435 65908592 -123370962 + L1 LINE L1 6 171 -7394 * 6304 154 6 14 chr6 65908574 65909514 -123370040 + L1 LINE L1 5041 5970 -1595 1799 166 3 26 chr6 65909514 65909827 -123369727 + AluSx SINE Alu 1 306 -6 6304 154 6 14 chr6 65909827 65910073 -123369481 + L1 LINE L1 5970 6217 -1348 1396 121 0 0 chr6 65910073 65910284 -123369270 + L1MA3 LINE L1 6090 6304 -1 271 183 83 0 chr6 65910313 65910373 -123369181 - MER53 DNA DNA -124 65 1 207 0 0 0 chr6 65911025 65911048 -123368506 + (CA)n Simple_repeat Simple_repeat 2 24 0 25 31 0 0 chr6 65911065 65911097 -123368457 + AT_rich Low_complexity Low_complexity 1 32 0 184 255 85 21 chr6 65911520 65911614 -123367940 + L2 LINE L2 1802 1901 -1413 294 286 0 12 chr6 65911625 65911709 -123367845 + MER94 DNA DNA 25 107 -27 721 158 9 0 chr6 65912030 65912144 -123367410 + FLAM_C SINE Alu 3 117 -16 189 74 0 0 chr6 65912148 65912175 -123367379 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 424 234 63 9 chr6 65912179 65912290 -123367264 - MER45 DNA AcHobo -836 117 1 2267 115 0 19 chr6 65912382 65912696 -123366858 + AluSg SINE Alu 1 308 -2 2172 133 3 0 chr6 65912979 65913288 -123366266 - AluSx SINE Alu -2 310 1 1146 138 0 0 chr6 65913573 65913747 -123365807 - MER2 DNA MER2_type -170 175 2 231 287 0 0 chr6 65913751 65913845 -123365709 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 1049 294 53 26 chr6 65913947 65914602 -123364952 - L2 LINE L2 -3 3310 2770 373 238 12 0 chr6 65915669 65915749 -123363805 - L2 LINE L2 -1 3312 3232 1452 92 65 5 chr6 65915872 65916089 -123363465 - MER30 DNA MER1_type 0 230 1 20127 139 13 43 chr6 65916204 65918158 -123361396 - L1MA3 LINE L1 0 7724 5714 1993 151 3 0 chr6 65918158 65918450 -123361104 + AluSx SINE Alu 1 293 -19 20127 139 13 43 chr6 65918450 65924295 -123355259 - L1MA3 LINE L1 -2010 5714 7 2105 197 21 19 chr6 65924435 65924901 -123354653 - MLT1C LTR MaLR 0 467 1 522 222 16 8 chr6 65924942 65925068 -123354486 + MER97a DNA MER1_type? 50 176 -718 2281 149 3 10 chr6 65925124 65925514 -123354040 - MLT1B LTR MaLR -3 387 1 749 34 0 0 chr6 65925896 65926012 -123353542 + AluY SINE Alu 193 308 0 40 0 0 0 chr6 65926113 65926153 -123353401 + AT_rich Low_complexity Low_complexity 1 40 0 396 284 75 69 chr6 65926387 65926866 -123352688 - L1ME4a LINE L1 -48 6073 5592 2289 119 0 0 chr6 65927051 65927362 -123352192 - AluSx SINE Alu -1 311 1 1768 152 55 18 chr6 65927398 65927780 -123351774 - L1MB2 LINE L1 -3 6168 5773 4849 119 11 9 chr6 65927811 65928558 -123350996 - L1PA15 LINE L1 0 6165 5418 249 230 15 0 chr6 65928559 65928638 -123350916 - L1ME4a LINE L1 -1563 4583 4504 320 206 62 31 chr6 65928648 65928745 -123350809 - L1MB2 LINE L1 -2453 5355 5256 2126 102 4 0 chr6 65928835 65929110 -123350444 - AluSx SINE Alu -36 276 1 835 232 137 17 chr6 65929223 65929456 -123350098 - MIR SINE MIR 0 262 2 7005 46 16 0 chr6 65929546 65930739 -123348815 - L1PA7 LINE L1 -6 6148 4944 22 35 0 0 chr6 65931680 65931709 -123347845 + AT_rich Low_complexity Low_complexity 1 29 0 855 181 0 0 chr6 65931720 65931893 -123347661 + FLAM_A SINE Alu 1 173 0 260 297 77 0 chr6 65932061 65932152 -123347402 + L2 LINE L2 3204 3301 -12 23 0 0 0 chr6 65932801 65932824 -123346730 + AT_rich Low_complexity Low_complexity 1 23 0 243 88 0 0 chr6 65934221 65934255 -123345299 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 258 306 185 23 chr6 65934362 65934535 -123345019 + MIR SINE MIR 50 250 -12 294 331 106 19 chr6 65934784 65934937 -123344617 - MIR3 SINE MIR 0 208 39 1858 181 3 10 chr6 65934937 65935247 -123344307 - AluJo SINE Alu 0 312 5 407 282 57 0 chr6 65935353 65935477 -123344077 + MIR SINE MIR 92 222 -40 1800 191 8 20 chr6 65935668 65936060 -123343494 - L1MD2 LINE L1 -1 6358 5972 3074 167 6 43 chr6 65936070 65936724 -123342830 - L1MD2 LINE L1 -355 5887 5258 21998 30 1 1 chr6 65936795 65940219 -123339335 + L1PA4 LINE L1 2726 6152 -3 251 350 7 0 chr6 65940236 65940376 -123339178 + L1MEc LINE L1 1915 2055 -4341 189 0 0 0 chr6 65940403 65940424 -123339130 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 6407 54 1 1 chr6 65940424 65941260 -123338294 - L1PA7 LINE L1 -16 6138 5303 2316 241 64 14 chr6 65941314 65942252 -123337302 + L1MEc LINE L1 2151 3092 -3123 544 333 7 7 chr6 65942474 65942627 -123336927 - MIR3 SINE MIR -19 189 37 430 234 63 109 chr6 65942698 65943001 -123336553 + MLT1K LTR MaLR 283 571 -17 190 356 204 0 chr6 65943389 65943521 -123336033 - MIR SINE MIR -56 206 48 2125 123 45 28 chr6 65943716 65944074 -123335480 + THE1B LTR MaLR 1 364 0 372 246 26 0 chr6 65944173 65944287 -123335267 - L1ME3 LINE L1 -29 6133 6017 1090 148 30 6 chr6 65944319 65944488 -123335066 - AluJo SINE Alu -54 258 86 1208 208 84 9 chr6 65944708 65945040 -123334514 + MLT1A1 LTR MaLR 1 357 -8 375 191 95 12 chr6 65945991 65946075 -123333479 + MER5A DNA MER1_type 16 106 -83 551 203 54 7 chr6 65949099 65949247 -123330307 - MER104 DNA Tc2 -4 176 22 2230 106 0 10 chr6 65950218 65950521 -123329033 - AluSx SINE Alu -12 300 1 352 276 149 27 chr6 65951577 65951798 -123327756 - MIR SINE MIR -12 250 3 1811 176 29 58 chr6 65952334 65952710 -123326844 + MLT1A1 LTR MaLR 1 365 0 301 240 168 62 chr6 65953025 65953204 -123326350 - L1MEd LINE L1 -4922 1197 1000 791 164 0 47 chr6 65953352 65953480 -123326074 + FLAM_A SINE Alu 1 122 -11 619 240 24 0 chr6 65953524 65953649 -123325905 - FLAM_A SINE Alu -5 128 1 22 0 0 0 chr6 65954995 65955017 -123324537 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr6 65956970 65957003 -123322551 + AT_rich Low_complexity Low_complexity 1 33 0 464 303 18 42 chr6 65957314 65957479 -123322075 - MER5B DNA MER1_type 0 178 18 2412 83 0 13 chr6 65958940 65959254 -123320300 - AluY SINE Alu -1 310 1 187 306 0 0 chr6 65960249 65960298 -123319256 - L2 LINE L2 -1408 1906 1858 285 343 67 0 chr6 65960376 65960481 -123319073 + L2 LINE L2 3183 3294 -19 2137 125 14 0 chr6 65961250 65961547 -123318007 - AluSx SINE Alu -11 301 1 502 142 0 80 chr6 65961703 65961816 -123317738 - L1MA4 LINE L1 0 6300 6197 280 247 144 24 chr6 65962743 65962913 -123316641 - MIR3 SINE MIR -14 194 10 950 190 89 34 chr6 65964258 65964527 -123315027 + MER33 DNA MER1_type 7 290 -34 240 304 43 0 chr6 65964549 65964618 -123314936 + L2 LINE L2 3012 3083 -189 1780 170 0 31 chr6 65966382 65966699 -123312855 - AluJo SINE Alu -5 307 1 787 165 103 62 chr6 65967045 65967239 -123312315 + MER3 DNA MER1_type 1 202 -7 21 57 0 0 chr6 65967439 65967474 -123312080 + AT_rich Low_complexity Low_complexity 1 35 0 2301 114 0 0 chr6 65967543 65967851 -123311703 - AluSx SINE Alu -2 310 3 2222 122 0 0 chr6 65970462 65970757 -123308797 - AluSx SINE Alu -17 295 1 2419 62 0 3 chr6 65970994 65971285 -123308269 + AluY SINE Alu 1 290 -21 967 232 43 5 chr6 65971425 65971636 -123307918 - MIR SINE MIR -42 220 2 346 204 188 36 chr6 65973449 65973619 -123305935 - MIR SINE MIR -54 208 16 2467 73 0 0 chr6 65975819 65976120 -123303434 + AluY SINE Alu 1 301 -10 334 294 153 89 chr6 65976823 65977105 -123302449 - L2 LINE L2 -1 3271 2972 25 65 0 0 chr6 65977745 65977791 -123301763 + AT_rich Low_complexity Low_complexity 1 46 0 352 235 46 10 chr6 65978316 65978468 -123301086 - MER3 DNA MER1_type -1 208 1 455 283 97 7 chr6 65980316 65980461 -123299093 + MIR SINE MIR 105 262 0 395 252 126 33 chr6 65980509 65980660 -123298894 - MER112 DNA MER1_type -8 252 88 362 271 210 20 chr6 65980749 65981063 -123298491 + L2 LINE L2 2713 3090 -223 2247 114 3 3 chr6 65983089 65983397 -123296157 - AluSq SINE Alu -5 308 1 1027 215 54 70 chr6 65983715 65984013 -123295541 + L1ME1 LINE L1 34 326 -6070 * 1407 209 43 33 chr6 65984010 65984403 -123295151 + L1ME1 LINE L1 4450 4846 -1369 697 211 8 8 chr6 65984404 65984532 -123295022 + FLAM_A SINE Alu 1 128 -5 2033 148 3 3 chr6 65984535 65984846 -123294708 + AluSx SINE Alu 1 311 -1 2526 199 119 58 chr6 65984851 65985767 -123293787 + L1ME1 LINE L1 5278 6230 -5 623 161 0 73 chr6 65986827 65986917 -123292637 + AluJb SINE Alu 198 278 -34 276 53 0 0 chr6 65986917 65986955 -123292599 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 623 161 0 73 chr6 65986955 65986988 -123292566 + AluJb SINE Alu 278 312 0 469 282 58 13 chr6 65987159 65987315 -123292239 - MIR SINE MIR -19 243 81 1057 163 0 35 chr6 65987446 65987618 -123291936 - FRAM SINE Alu 0 166 1 2113 68 0 19 chr6 65987628 65987894 -123291660 - AluY SINE Alu -11 300 40 202 237 92 79 chr6 65988251 65988327 -123291227 + MIR SINE MIR 7 83 -179 517 220 71 116 chr6 65989304 65989492 -123290062 + MER112 DNA MER1_type 3 198 -62 2711 146 36 23 chr6 65989492 65989970 -123289584 + L1MB1 LINE L1 5674 6157 -11 342 0 0 0 chr6 65989970 65990008 -123289546 + (CA)n Simple_repeat Simple_repeat 1 38 0 517 220 71 116 chr6 65990008 65990086 -123289468 + MER112 DNA MER1_type 196 258 -2 2321 89 3 7 chr6 65990235 65990539 -123289015 + AluSq SINE Alu 1 303 -10 21 0 0 0 chr6 65990802 65990823 -123288731 + AT_rich Low_complexity Low_complexity 1 21 0 1606 143 74 0 chr6 65991195 65991453 -123288101 - AluJo SINE Alu -35 277 1 2201 113 17 0 chr6 65992036 65992336 -123287218 + AluSg SINE Alu 1 305 -5 304 253 126 29 chr6 65992405 65992579 -123286975 - L2 LINE L2 0 3313 3123 213 39 0 0 chr6 65993953 65993979 -123285575 + (TCC)n Simple_repeat Simple_repeat 1 26 0 229 286 16 0 chr6 65994788 65994851 -123284703 + MIR SINE MIR 52 115 -147 306 67 0 0 chr6 65995517 65995562 -123283992 + (TG)n Simple_repeat Simple_repeat 1 45 0 250 359 87 0 chr6 65995841 65995944 -123283610 + L2 LINE L2 3145 3256 -16 1513 185 65 30 chr6 65996061 65996570 -123282984 + Charlie5 DNA MER1_type 1 2624 0 21 36 0 0 chr6 65997511 65997539 -123282015 + GC_rich Low_complexity Low_complexity 1 28 0 274 271 205 8 chr6 65997956 65998078 -123281476 - MIR SINE MIR -104 158 13 2435 19 0 0 chr6 65998229 65998496 -123281058 - AluYa5 SINE Alu -6 305 39 243 350 43 25 chr6 65998669 65998832 -123280722 + MIR3 SINE MIR 38 203 -5 203 269 115 66 chr6 65999026 65999208 -123280346 - L2 LINE L2 -1588 1726 1536 2286 90 7 3 chr6 65999405 65999704 -123279850 - AluSx SINE Alu -12 300 1 1026 113 0 0 chr6 65999704 65999837 -123279717 - AluSq/x SINE Alu -176 137 5 3837 141 63 83 chr6 66000050 66000134 -123279420 + MER4D LTR ERV1 2 86 -817 2210 116 3 7 chr6 66000134 66000444 -123279110 + AluSx SINE Alu 1 309 -3 3837 141 63 83 chr6 66000444 66001015 -123278539 + MER4D LTR ERV1 86 667 -236 2597 99 3 3 chr6 66001015 66001370 -123278184 + THE1A LTR MaLR 1 355 0 11832 87 8 8 chr6 66001370 66002951 -123276603 + THE1A-int LTR MaLR 1 1580 0 2673 90 3 0 chr6 66002951 66003305 -123276249 + THE1A LTR MaLR 1 355 0 3837 141 63 83 chr6 66003305 66003566 -123275988 + MER4D LTR ERV1 664 903 0 23 0 0 0 chr6 66004069 66004092 -123275462 + AT_rich Low_complexity Low_complexity 1 23 0 350 195 52 0 chr6 66004204 66004281 -123275273 + MER20 DNA MER1_type 137 217 -2 3804 96 54 7 chr6 66004291 66004864 -123274690 + MER4A LTR ERV1 1 600 0 609 121 0 10 chr6 66005122 66005221 -123274333 + MER4A LTR ERV1 1 98 -566 1826 120 9 22 chr6 66005221 66005571 -123273983 + MER4A LTR ERV1 261 664 0 3832 136 136 49 chr6 66005574 66006508 -123273046 + MER4A-int LTR ERV1 1 1015 -5583 213 65 0 0 chr6 66006508 66006539 -123273015 + (TG)n Simple_repeat Simple_repeat 2 32 0 7068 112 47 15 chr6 66006539 66007832 -123271722 + MER4A-int LTR ERV1 1161 2495 -4103 1136 171 80 4 chr6 66007832 66008071 -123271483 - LTR8 LTR ERV1 -434 257 1 3957 128 76 40 chr6 66008071 66008601 -123270953 + MER4A-int LTR ERV1 2737 3246 -3352 2018 112 0 14 chr6 66008601 66008917 -123270637 + AluSx SINE Alu 1 312 0 3957 128 76 40 chr6 66008917 66009056 -123270498 + MER4A-int LTR ERV1 3246 3379 -3219 2257 111 0 0 chr6 66009056 66009353 -123270201 - AluSg SINE Alu -13 297 1 3957 128 76 40 chr6 66009353 66009593 -123269961 + MER4A-int LTR ERV1 3379 3681 -2917 * 15967 98 47 16 chr6 66009592 66012267 -123267287 + MER4A-int LTR ERV1 3837 6593 -5 653 101 0 10 chr6 66012278 66012377 -123267177 + MER4A LTR ERV1 1 98 -566 1743 134 171 23 chr6 66012377 66012727 -123266827 + MER4A LTR ERV1 261 662 -2 391 270 178 29 chr6 66012949 66013123 -123266431 + MIR SINE MIR 56 255 -7 439 236 56 49 chr6 66014036 66014180 -123265374 - MIR SINE MIR -105 157 13 929 174 67 5 chr6 66014487 66014682 -123264872 - L1PB4 LINE L1 0 6156 5950 1369 109 9 27 chr6 66015569 66015601 -123263953 + AluSg/x SINE Alu 94 125 -185 363 44 0 0 chr6 66015601 66015646 -123263908 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1369 109 9 27 chr6 66015646 66015834 -123263720 + AluSg/x SINE Alu 125 310 0 451 309 43 7 chr6 66016031 66016170 -123263384 - L2 LINE L2 -1 3312 3169 228 333 0 0 chr6 66017437 66017506 -123262048 + GA-rich Low_complexity Low_complexity 2 70 0 2226 111 7 0 chr6 66017652 66017950 -123261604 - AluSx SINE Alu -11 301 2 202 294 29 15 chr6 66017988 66018056 -123261498 + MIR SINE MIR 144 212 -50 302 325 43 27 chr6 66018463 66018651 -123260903 - MIR SINE MIR -3 259 69 540 266 61 84 chr6 66018986 66019146 -123260408 - L2 LINE L2 -8 3305 3143 4172 70 76 64 chr6 66019146 66019690 -123259864 - PABL_B LTR ERV1 0 667 131 1939 110 3 53 chr6 66019690 66020015 -123259539 - AluSx SINE Alu 0 310 1 1937 90 7 24 chr6 66020025 66020344 -123259210 - AluY SINE Alu 0 314 1 4172 70 76 64 chr6 66020344 66020445 -123259109 - PABL_B LTR ERV1 -544 123 1 540 266 61 84 chr6 66020445 66020581 -123258973 - L2 LINE L2 -170 3143 3016 463 196 116 18 chr6 66021509 66021621 -123257933 - FLAM_A SINE Alu -9 133 11 47 70 0 9 chr6 66021633 66021689 -123257865 + AT_rich Low_complexity Low_complexity 1 56 -57 3854 63 53 4 chr6 66021689 66022212 -123257342 + L1PB1 LINE L1 5596 6144 -7 47 70 0 9 chr6 66022212 66022269 -123257285 + AT_rich Low_complexity Low_complexity 56 113 0 869 102 0 0 chr6 66022269 66022387 -123257167 - FLAM_C SINE Alu -15 118 1 321 225 33 83 chr6 66023204 66023324 -123256230 - MIR SINE MIR -117 145 32 2379 100 0 0 chr6 66023664 66023973 -123255581 - AluSx SINE Alu -3 309 1 218 213 0 21 chr6 66024103 66024150 -123255404 + CT-rich Low_complexity Low_complexity 1 46 0 185 296 111 12 chr6 66024179 66024260 -123255294 - L2 LINE L2 -33 3280 3192 1921 183 3 6 chr6 66024572 66024927 -123254627 + MLT1A1 LTR MaLR 12 365 0 1854 151 17 17 chr6 66025068 66025360 -123254194 - AluSx SINE Alu -20 292 1 1838 129 32 26 chr6 66025640 66025767 -123253787 + AluSx SINE Alu 2 127 -185 2400 58 7 0 chr6 66025767 66026092 -123253462 + AluY SINE Alu 1 311 0 1838 129 32 26 chr6 66026092 66026273 -123253281 + AluSx SINE Alu 127 312 0 726 236 23 39 chr6 66026275 66026533 -123253021 - L1MC5 LINE L1 -48 7913 7660 1821 170 0 7 chr6 66026543 66026837 -123252717 + AluJb SINE Alu 1 292 -20 1981 163 3 3 chr6 66026945 66027251 -123252303 + AluJb SINE Alu 1 306 -6 274 178 297 10 chr6 66027308 66027409 -123252145 - LTR50 LTR ERVL -423 372 243 1749 222 25 79 chr6 66027704 66028293 -123251261 - L1ME1 LINE L1 -5 6161 5607 1988 154 0 0 chr6 66028293 66028591 -123250963 - AluSx SINE Alu -14 298 1 1749 222 25 79 chr6 66028591 66028637 -123250917 - L1ME1 LINE L1 -559 5607 5560 1886 165 61 3 chr6 66028659 66029004 -123250550 - MSTB LTR MaLR -36 390 26 727 234 142 0 chr6 66029011 66029216 -123250338 - L1ME1 LINE L1 -601 5565 5332 625 217 14 0 chr6 66029213 66029356 -123250198 + L1M4 LINE L1 2715 2859 -3287 * 304 242 53 15 chr6 66029358 66029490 -123250064 - HAL1 LINE L1 -984 1523 1387 539 335 63 23 chr6 66029500 66029801 -123249753 - L1MEd LINE L1 -4864 1255 943 2050 128 7 0 chr6 66029919 66030201 -123249353 - AluSx SINE Alu -27 285 2 231 114 0 0 chr6 66031135 66031170 -123248384 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 293 323 11 11 chr6 66031692 66031785 -123247769 + L3b LINE CR1 1279 1371 -212 1021 209 11 0 chr6 66032007 66032194 -123247360 - MER5A DNA MER1_type 0 189 1 520 311 16 49 chr6 66032202 66032385 -123247169 - MER5B DNA MER1_type 0 178 2 1108 119 49 7 chr6 66032549 66032775 -123246779 + MSTA LTR MaLR 199 428 0 577 248 80 90 chr6 66033034 66033445 -123246109 + MLT1H LTR MaLR 8 414 -135 24 91 0 0 chr6 66033576 66033642 -123245912 + AT_rich Low_complexity Low_complexity 1 66 0 1744 315 95 43 chr6 66034115 66035526 -123244028 + L2 LINE L2 1787 3264 -8 315 0 0 0 chr6 66035563 66035598 -123243956 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1998 143 0 40 chr6 66035601 66035922 -123243632 - AluJb SINE Alu -4 308 1 722 177 8 8 chr6 66036197 66036327 -123243227 + FLAM_A SINE Alu 1 130 -3 1140 145 45 21 chr6 66036333 66036575 -123242979 - MER33 DNA MER1_type -76 248 1 225 125 83 0 chr6 66036616 66036664 -123242890 + CT-rich Low_complexity Low_complexity 2 53 0 2243 99 3 7 chr6 66037420 66037722 -123241832 - AluSx SINE Alu -11 301 1 316 253 136 32 chr6 66038172 66038326 -123241228 + LTR16C LTR ERVL 311 480 -11 944 336 112 15 chr6 66038352 66039102 -123240452 - L2 LINE L2 -830 2484 1662 2179 109 0 3 chr6 66039553 66039847 -123239707 - AluSx SINE Alu -14 298 6 2006 80 13 25 chr6 66040403 66040520 -123239034 - L1MA4A LINE L1 -6 6297 6180 2472 111 8 16 chr6 66040520 66040898 -123238656 + THE1C LTR MaLR 1 375 0 2006 80 13 25 chr6 66040898 66041094 -123238460 - L1MA4A LINE L1 -123 6180 5988 330 258 97 71 chr6 66041405 66041560 -123237994 + MIR SINE MIR 98 256 -6 38 0 0 0 chr6 66041616 66041654 -123237900 + AT_rich Low_complexity Low_complexity 1 38 0 643 210 0 0 chr6 66041654 66041773 -123237781 - FLAM_A SINE Alu -11 122 4 1402 138 169 27 chr6 66041801 66042062 -123237492 - AluJb SINE Alu -4 298 1 200 308 15 31 chr6 66042203 66042268 -123237286 + MIR SINE MIR 36 99 -109 605 307 57 0 chr6 66043027 66043203 -123236351 - MER91A DNA MER1_type 0 196 11 427 276 47 16 chr6 66044623 66044750 -123234804 + MIR3 SINE MIR 30 160 -48 563 250 87 24 chr6 66044850 66045233 -123234321 + Charlie2 DNA MER1_type 163 598 -2184 1969 143 16 34 chr6 66045437 66045822 -123233732 - MLT1B LTR MaLR 0 390 13 1230 285 51 43 chr6 66045833 66045990 -123233564 - L1MEc LINE L1 -4656 1740 1586 2080 121 3 14 chr6 66045990 66046319 -123233235 - AluSg SINE Alu 0 310 1 1230 285 51 43 chr6 66046319 66046460 -123233094 - L1MEc LINE L1 -4810 1586 1448 2478 139 65 0 chr6 66046460 66046862 -123232692 - MSTA LTR MaLR 0 428 1 1230 285 51 43 chr6 66046862 66047139 -123232415 - L1MEc LINE L1 -4948 1448 1175 1617 183 105 15 chr6 66047139 66047473 -123232081 - MLT1A1 LTR MaLR -1 364 1 1230 285 51 43 chr6 66047473 66047736 -123231818 - L1MEc LINE L1 -5221 1175 893 719 231 12 12 chr6 66047744 66047917 -123231637 + MER58B DNA MER1_type 169 341 0 566 307 50 30 chr6 66048099 66048461 -123231093 - L1MEc LINE L1 -5920 476 108 2324 92 3 0 chr6 66049165 66049459 -123230095 + AluSp SINE Alu 1 295 -18 450 247 59 41 chr6 66049950 66050120 -123229434 + MER58C DNA MER1_type 40 212 -3 2033 147 0 10 chr6 66050580 66050887 -123228667 - AluJb SINE Alu -8 304 1 542 202 10 0 chr6 66051377 66051481 -123228073 + MER20 DNA MER1_type 111 215 -4 185 145 29 29 chr6 66052033 66052102 -123227452 + (TTAA)n Simple_repeat Simple_repeat 4 72 0 1974 146 0 0 chr6 66052190 66052503 -123227051 - AluSx SINE Alu 0 313 1 2189 97 31 0 chr6 66053455 66053743 -123225811 - AluSg SINE Alu -13 297 1 823 138 8 31 chr6 66053745 66053875 -123225679 - AluJo/FLAM SINE Alu -185 127 1 237 65 0 0 chr6 66053970 66054001 -123225553 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1369 259 61 38 chr6 66054622 66055094 -123224460 - L2 LINE L2 0 3313 2831 25 0 0 0 chr6 66055477 66055502 -123224052 + AT_rich Low_complexity Low_complexity 1 25 0 6368 77 3 40 chr6 66055641 66056002 -123223552 - L1PB1 LINE L1 -1 6150 5777 231 88 0 0 chr6 66056002 66056036 -123223518 + (TA)n Simple_repeat Simple_repeat 1 34 0 6368 77 3 40 chr6 66056036 66056755 -123222799 - L1PB1 LINE L1 -374 5777 5068 310 178 14 28 chr6 66056937 66057030 -123222524 + L1ME1 LINE L1 5378 5460 -706 968 197 0 10 chr6 66057033 66057231 -123222323 - L1M3 LINE L1 -463 5720 5525 1827 155 6 37 chr6 66057252 66057574 -123221980 - AluJb SINE Alu 0 312 1 23 78 0 0 chr6 66057637 66057688 -123221866 + AT_rich Low_complexity Low_complexity 1 51 0 21 71 0 0 chr6 66057710 66057752 -123221802 + AT_rich Low_complexity Low_complexity 1 42 0 1972 119 14 7 chr6 66058034 66058329 -123221225 + AluSx SINE Alu 6 302 -10 25 0 0 0 chr6 66058997 66059022 -123220532 + AT_rich Low_complexity Low_complexity 1 25 0 22 80 0 0 chr6 66059055 66059105 -123220449 + AT_rich Low_complexity Low_complexity 1 50 0 1415 124 29 9 chr6 66059311 66059521 -123220033 - AluSg/x SINE Alu -14 298 85 28 29 0 0 chr6 66059960 66059995 -123219559 + AT_rich Low_complexity Low_complexity 1 35 0 933 199 24 116 chr6 66060099 66060470 -123219084 + L1ME1 LINE L1 5789 6125 -41 457 179 42 11 chr6 66061204 66061299 -123218255 + MER5A DNA MER1_type 9 106 -83 730 215 130 60 chr6 66062115 66062431 -123217123 - MER46C DNA MER2_type 0 338 1 385 236 159 85 chr6 66062815 66063073 -123216481 + MLT1J LTR MaLR 235 511 0 1053 136 5 42 chr6 66063086 66063277 -123216277 - FRAM SINE Alu 0 176 1 2706 111 13 63 chr6 66063312 66063984 -123215570 - LTR8A LTR ERV1 0 727 1 1271 187 0 0 chr6 66064066 66064280 -123215274 + AluJo SINE Alu 85 298 -14 25 31 0 0 chr6 66064360 66064392 -123215162 + AT_rich Low_complexity Low_complexity 1 32 0 604 231 16 35 chr6 66064398 66064627 -123214927 + L1ME3 LINE L1 5905 6130 -34 186 239 102 45 chr6 66064844 66064932 -123214622 + L2 LINE L2 1680 1772 -1542 2441 143 34 0 chr6 66066107 66066520 -123213034 - MSTA LTR MaLR -1 427 1 261 370 49 0 chr6 66066588 66066669 -123212885 + L2 LINE L2 3136 3220 -52 243 0 0 0 chr6 66067109 66067136 -123212418 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1754 172 0 0 chr6 66067144 66067411 -123212143 - AluJb SINE Alu -45 267 1 4031 189 33 20 chr6 66068630 66069438 -123210116 - MER21B LTR ERV1 -44 819 1 390 242 58 11 chr6 66069515 66069634 -123209920 + MIR SINE MIR 14 130 -78 657 154 8 0 chr6 66069647 66069770 -123209784 + L1MC4 LINE L1 7919 8042 0 2351 81 0 3 chr6 66171095 66171403 -123108151 - AluSc SINE Alu -2 307 1 197 250 0 50 chr6 66171403 66171463 -123108091 + MER5B DNA MER1_type 114 170 -8 25 51 0 0 chr6 66172183 66172222 -123107332 + AT_rich Low_complexity Low_complexity 1 39 0 1938 125 0 54 chr6 66172274 66172609 -123106945 - AluSx SINE Alu 0 319 1 309 158 37 0 chr6 66172659 66172741 -123106813 + (TA)n Simple_repeat Simple_repeat 2 86 0 1650 181 7 13 chr6 66174223 66174522 -123105032 - AluJo SINE Alu -5 307 11 643 262 198 20 chr6 66174657 66175001 -123104553 + LTR16C LTR ERVL 33 437 -54 2722 193 37 40 chr6 66175059 66175478 -123104076 + MER82 DNA MER2_type 13 431 -222 2289 90 0 3 chr6 66175478 66175777 -123103777 - AluSq SINE Alu -15 298 1 2722 193 37 40 chr6 66175777 66175975 -123103579 + MER82 DNA MER2_type 431 628 -25 459 321 227 21 chr6 66176915 66177523 -123102031 - L2 LINE L2 -803 2511 1779 639 295 19 19 chr6 66177740 66177947 -123101607 - MIR SINE MIR -50 212 6 6990 53 0 23 chr6 66177963 66178918 -123100636 + L1PA7 LINE L1 5219 6152 -2 194 91 30 0 chr6 66179550 66179583 -123099971 + (TTA)n Simple_repeat Simple_repeat 2 35 0 36 0 0 0 chr6 66179954 66179990 -123099564 + AT_rich Low_complexity Low_complexity 1 36 0 246 143 0 0 chr6 66180590 66180639 -123098915 + (CA)n Simple_repeat Simple_repeat 1 49 0 27 62 0 0 chr6 66181034 66181082 -123098472 + AT_rich Low_complexity Low_complexity 1 48 0 3053 99 22 5 chr6 66182290 66182734 -123096820 + L1PA11 LINE L1 5720 6171 -3 28 29 0 0 chr6 66182734 66182769 -123096785 + AT_rich Low_complexity Low_complexity 1 35 0 321 336 38 43 chr6 66182848 66183059 -123096495 - L1 LINE L1 -1834 4312 4103 3148 261 89 77 chr6 66183750 66183883 -123095671 - HAL1 LINE L1 -629 1878 1748 2585 49 7 0 chr6 66183883 66184191 -123095363 - AluY SINE Alu -1 310 1 3148 261 89 77 chr6 66184191 66184777 -123094777 - HAL1 LINE L1 -759 1748 1170 1564 141 76 57 chr6 66184777 66185145 -123094409 - THE1C LTR MaLR 0 375 1 3148 261 89 77 chr6 66185145 66185171 -123094383 - HAL1 LINE L1 -1337 1170 1146 242 105 26 0 chr6 66185171 66185209 -123094345 + MER81 DNA DNA 35 73 -41 3148 261 89 77 chr6 66185209 66185424 -123094130 - HAL1 LINE L1 -1361 1146 935 279 0 0 0 chr6 66185424 66185455 -123094099 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3148 261 89 77 chr6 66185455 66186310 -123093244 - HAL1 LINE L1 -1572 935 1 284 297 92 5 chr6 66186382 66186567 -123092987 - L1 LINE L1 -2322 3824 3624 1735 141 50 94 chr6 66186617 66186900 -123092654 + MER7A DNA MER2_type 4 267 -2771 3906 112 3 16 chr6 66186900 66187505 -123092049 + L1PB1 LINE L1 5552 6148 -3 1735 141 50 94 chr6 66187505 66187582 -123091972 + MER7A DNA MER2_type 267 346 0 370 334 70 73 chr6 66187585 66188199 -123091355 - L1 LINE L1 -2576 3570 2959 5241 160 38 52 chr6 66188430 66188778 -123090776 + L1MA9 LINE L1 4710 5061 -1251 198 0 0 0 chr6 66188778 66188800 -123090754 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 5241 160 38 52 chr6 66188800 66190046 -123089508 + L1MA9 LINE L1 5061 6311 -1 430 296 78 48 chr6 66190079 66190349 -123089205 - L1 LINE L1 -3240 2906 2629 335 260 45 45 chr6 66190997 66191151 -123088403 - Charlie7 DNA MER1_type -971 1641 1488 2079 280 54 48 chr6 66191274 66192428 -123087126 - Charlie7 DNA MER1_type -1346 1266 106 481 254 25 8 chr6 66192428 66192550 -123087004 - MER58A DNA MER1_type -1 223 100 540 202 39 0 chr6 66192558 66192662 -123086892 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3558 113 69 69 chr6 66192653 66192866 -123086688 + Tigger3(Golem) DNA MER2_type 2277 2489 -539 2422 77 3 10 chr6 66192866 66193176 -123086378 - AluY SINE Alu -3 308 1 3558 113 69 69 chr6 66193176 66193282 -123086272 + Tigger3(Golem) DNA MER2_type 2489 2594 -434 1904 151 14 0 chr6 66193282 66193567 -123085987 + AluSx SINE Alu 1 289 -23 3558 113 69 69 chr6 66193567 66193998 -123085556 + Tigger3(Golem) DNA MER2_type 2593 3028 0 493 212 20 10 chr6 66193998 66194088 -123085466 - MER58A DNA MER1_type -16 91 1 1511 203 36 62 chr6 66195975 66196618 -123082936 + L1MA9 LINE L1 5700 6291 -9 335 200 24 12 chr6 66197064 66197149 -123082405 + L2 LINE L2 3190 3275 -38 2039 120 0 20 chr6 66198390 66198682 -123080872 - AluSx SINE Alu -26 286 1 183 162 0 0 chr6 66199534 66199571 -123079983 + (CA)n Simple_repeat Simple_repeat 1 37 0 193 250 68 45 chr6 66199743 66199831 -123079723 - MIR3 SINE MIR -4 204 115 830 204 7 0 chr6 66200280 66200432 -123079122 - MER20 DNA MER1_type 0 219 67 196 217 36 121 chr6 66200452 66200535 -123079019 - MIR3 SINE MIR -48 160 85 2063 104 49 3 chr6 66200857 66201144 -123078410 - AluSx SINE Alu -12 300 1 330 45 0 0 chr6 66201933 66201977 -123077577 + (CGGTG)n Simple_repeat Simple_repeat 1 44 0 183 80 0 0 chr6 66202190 66202215 -123077339 + (A)n Simple_repeat Simple_repeat 1 25 0 1842 164 0 10 chr6 66203510 66203802 -123075752 - AluJo SINE Alu -23 289 1 22 0 0 0 chr6 66203852 66203874 -123075680 + AT_rich Low_complexity Low_complexity 1 22 0 2117 63 0 11 chr6 66203970 66204239 -123075315 - AluY SINE Alu -22 289 24 24 32 0 0 chr6 66207659 66207690 -123071864 + AT_rich Low_complexity Low_complexity 1 31 0 359 294 3 80 chr6 66208142 66208217 -123071337 - MIR3 SINE MIR -17 191 127 2286 93 3 0 chr6 66208217 66208529 -123071025 + AluSq SINE Alu 1 313 0 359 294 3 80 chr6 66208529 66208596 -123070958 - MIR3 SINE MIR -81 127 56 37 81 0 0 chr6 66208602 66208688 -123070866 + AT_rich Low_complexity Low_complexity 1 86 0 1816 161 0 20 chr6 66209188 66209492 -123070062 - AluJb SINE Alu -14 298 1 198 136 0 0 chr6 66209789 66209833 -123069721 + (TA)n Simple_repeat Simple_repeat 2 45 0 27 0 0 0 chr6 66210096 66210123 -123069431 + AT_rich Low_complexity Low_complexity 1 27 0 248 254 0 0 chr6 66210286 66210341 -123069213 - L2 LINE L2 -5 3308 3254 205 247 14 41 chr6 66211596 66211669 -123067885 + CT-rich Low_complexity Low_complexity 4 74 0 387 73 0 0 chr6 66213174 66213229 -123066325 + (CA)n Simple_repeat Simple_repeat 1 55 0 227 395 0 0 chr6 66213358 66213434 -123066120 + MIR SINE MIR 46 121 -87 386 304 177 6 chr6 66213808 66213966 -123065588 + MER5A DNA MER1_type 4 188 -1 189 342 26 40 chr6 66214690 66214766 -123064788 - L2 LINE L2 -49 3223 3149 975 286 120 36 chr6 66214839 66215407 -123064147 + L2 LINE L2 2708 3313 0 2910 84 33 2 chr6 66215474 66215900 -123063654 + L1PA10 LINE L1 5717 6155 -13 195 331 29 58 chr6 66217257 66217396 -123062158 + MIR SINE MIR 68 202 -60 185 196 18 0 chr6 66219424 66219480 -123060074 + (TA)n Simple_repeat Simple_repeat 2 58 0 201 74 0 0 chr6 66220080 66220107 -123059447 + (TA)n Simple_repeat Simple_repeat 1 27 0 420 357 20 15 chr6 66220417 66220613 -123058941 - MIR3 SINE MIR -9 199 3 21 36 0 0 chr6 66220779 66220807 -123058747 + AT_rich Low_complexity Low_complexity 1 28 0 2515 53 0 0 chr6 66220997 66221300 -123058254 + AluY SINE Alu 1 303 -8 1058 167 126 7 chr6 66221448 66221718 -123057836 + MER33 DNA MER1_type 1 302 -22 834 206 24 0 chr6 66222817 66222987 -123056567 - L1MB1 LINE L1 -7 6161 5988 305 297 78 0 chr6 66223050 66223178 -123056376 - HAL1 LINE L1 -861 1646 1509 265 313 62 21 chr6 66223235 66223427 -123056127 - HAL1 LINE L1 -1078 1429 1230 638 229 0 8 chr6 66223434 66223556 -123055998 + Tigger3(Golem) DNA MER2_type 2 122 -2907 * 2818 111 69 18 chr6 66223542 66224036 -123055518 + Tigger3(Golem) DNA MER2_type 2285 2803 -226 1387 115 0 28 chr6 66224074 66224292 -123055262 - AluSc SINE Alu -20 289 78 428 256 22 0 chr6 66224292 66224382 -123055172 + Tigger3(Golem) DNA MER2_type 2937 3028 -1 245 302 90 16 chr6 66224404 66224593 -123054961 - L1MEd LINE L1 -5022 1097 895 1929 170 19 24 chr6 66225256 66225633 -123053921 + THE1C LTR MaLR 1 375 0 34 42 0 0 chr6 66227378 66227426 -123052128 + AT_rich Low_complexity Low_complexity 1 48 0 668 87 0 0 chr6 66228256 66228348 -123051206 + AluSc SINE Alu 208 299 -10 15069 172 29 32 chr6 66229485 66233875 -123045679 + L1MA2 LINE L1 15 4732 -2991 6171 97 11 0 chr6 66233875 66235517 -123044037 - L1PA10 LINE L1 -4 6164 4513 15069 172 29 32 chr6 66235517 66238500 -123041054 + L1MA2 LINE L1 4732 7723 0 337 210 152 43 chr6 66238888 66239026 -123040528 + MIR SINE MIR 110 262 0 180 125 0 0 chr6 66239351 66239383 -123040171 + (T)n Simple_repeat Simple_repeat 1 32 0 385 284 32 26 chr6 66239588 66239743 -123039811 + L2 LINE L2 3158 3313 0 513 149 0 0 chr6 66239826 66239913 -123039641 - L1MA5A LINE L1 0 6297 6211 225 284 30 0 chr6 66241238 66241305 -123038249 + GA-rich Low_complexity Low_complexity 4 72 0 513 294 64 49 chr6 66241312 66241516 -123038038 - MIR SINE MIR -15 247 41 894 355 97 29 chr6 66242629 66243382 -123036172 + L2 LINE L2 458 1261 -2053 592 276 25 35 chr6 66243441 66243644 -123035910 - L2 LINE L2 0 3313 3113 390 273 91 58 chr6 66243755 66243909 -123035645 - L2 LINE L2 -232 3081 2923 2632 306 98 11 chr6 66244673 66245750 -123033804 - L2 LINE L2 -362 2952 1782 279 312 35 85 chr6 66245766 66245965 -123033589 + L2 LINE L2 1343 1531 -1783 1907 183 34 25 chr6 66245974 66246329 -123033225 - MLT1A1 LTR MaLR -1 364 7 386 335 75 19 chr6 66246334 66246546 -123033008 + L2 LINE L2 1609 1832 -1482 2165 222 35 8 chr6 66247099 66247621 -123031933 + L1ME1 LINE L1 5626 6161 -5 294 230 59 20 chr6 66248592 66248744 -123030810 + L1MDa LINE L1 2402 2559 -3981 360 346 42 23 chr6 66249681 66249895 -123029659 + L2 LINE L2 2819 3036 -277 270 261 29 14 chr6 66249936 66250005 -123029549 + L2 LINE L2 3239 3308 -5 27 29 0 0 chr6 66250179 66250213 -123029341 + AT_rich Low_complexity Low_complexity 1 34 0 491 230 96 38 chr6 66251001 66251240 -123028314 + MER112 DNA MER1_type 4 256 0 227 149 0 21 chr6 66251350 66251397 -123028157 + (GAAAA)n Simple_repeat Simple_repeat 1 46 0 2366 105 0 6 chr6 66251875 66252226 -123027328 - L1P LINE L1 -1120 5026 4678 1262 273 91 21 chr6 66252195 66252711 -123026843 - L1ME LINE L1 -5513 606 55 * 1713 183 3 3 chr6 66252882 66253171 -123026383 + AluJo SINE Alu 8 296 -16 356 258 10 21 chr6 66253294 66253391 -123026163 - L1ME LINE L1 -5914 205 110 234 231 64 77 chr6 66253397 66253475 -123026079 + MER116 DNA Mariner 2 78 -2 298 322 144 11 chr6 66253558 66253732 -123025822 + MARNA DNA Mariner 341 537 -49 2067 203 120 9 chr6 66254361 66254828 -123024726 - LTR53 LTR ERVL 0 519 1 255 379 116 47 chr6 66254918 66255348 -123024206 + L2 LINE L2 2809 3268 -4 26 50 0 0 chr6 66256076 66256116 -123023438 + AT_rich Low_complexity Low_complexity 1 40 0 202 350 15 51 chr6 66257445 66257582 -123021972 + MIR3 SINE MIR 1 132 -76 22 56 0 0 chr6 66257994 66258030 -123021524 + AT_rich Low_complexity Low_complexity 1 36 0 2233 108 0 13 chr6 66258217 66258524 -123021030 - AluSx SINE Alu -9 303 1 716 226 0 0 chr6 66258624 66258757 -123020797 + FLAM_A SINE Alu 1 133 0 2526 79 44 0 chr6 66259415 66259755 -123019799 + THE1A LTR MaLR 1 355 0 22 0 0 0 chr6 66262661 66262683 -123016871 + AT_rich Low_complexity Low_complexity 1 22 0 192 200 0 0 chr6 66264349 66264394 -123015160 + (CATA)n Simple_repeat Simple_repeat 2 46 0 226 311 28 19 chr6 66264532 66264638 -123014916 + MIR3 SINE MIR 81 187 -21 210 202 307 44 chr6 66264746 66264860 -123014694 - MIR SINE MIR -56 206 63 884 241 46 17 chr6 66265000 66265241 -123014313 - MIR SINE MIR -1 261 14 440 319 173 4 chr6 66265370 66265596 -123013958 - L3 LINE CR1 -7 1570 1307 330 307 65 61 chr6 66265885 66266116 -123013438 - L3 LINE CR1 -610 967 736 1554 203 0 14 chr6 66266318 66266604 -123012950 - AluJo SINE Alu -30 282 1 223 179 0 0 chr6 66266604 66266643 -123012911 - L2 LINE L2 -12 3301 3263 2013 165 37 3 chr6 66267368 66267690 -123011864 + MER1B DNA MER1_type 1 333 -4 322 380 41 0 chr6 66268178 66268299 -123011255 + L2 LINE L2 3137 3262 -10 2020 117 43 0 chr6 66268594 66268876 -123010678 + AluSq SINE Alu 7 300 -13 991 281 157 35 chr6 66269228 66269940 -123009614 + L2 LINE L2 2514 3311 -2 2308 103 3 0 chr6 66270487 66270789 -123008765 + AluSx SINE Alu 1 303 -9 23 68 0 0 chr6 66272015 66272059 -123007495 + AT_rich Low_complexity Low_complexity 1 44 0 242 346 90 27 chr6 66272298 66272486 -123007068 + MIR SINE MIR 2 201 -61 24 32 0 0 chr6 66277520 66277551 -123002003 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr6 66277629 66277664 -123001890 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 66277813 66277834 -123001720 + AT_rich Low_complexity Low_complexity 1 21 0 184 278 226 15 chr6 66278782 66278915 -123000639 + L2 LINE L2 2594 2754 -560 189 385 30 22 chr6 66279462 66279597 -122999957 + L2 LINE L2 1293 1428 -1886 187 341 47 47 chr6 66279675 66279845 -122999709 + L2 LINE L2 1536 1705 -1609 739 297 79 39 chr6 66279897 66280355 -122999199 + MLT1H LTR MaLR 72 547 -2 1036 192 109 64 chr6 66280499 66280998 -122998556 + MLT1E1 LTR MaLR 17 626 0 233 366 81 8 chr6 66281021 66281256 -122998298 + L2 LINE L2 1854 2105 -1209 237 317 112 52 chr6 66281259 66281527 -122998027 + L2 LINE L2 2945 3228 -44 23 0 0 0 chr6 66281536 66281559 -122997995 + AT_rich Low_complexity Low_complexity 1 23 0 231 36 0 0 chr6 66282667 66282695 -122996859 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 305 314 58 41 chr6 66282695 66282816 -122996738 - L2 LINE L2 -14 3258 3136 729 227 58 0 chr6 66283210 66283382 -122996172 - MIR SINE MIR -12 250 69 247 318 167 46 chr6 66283412 66284136 -122995418 + L2 LINE L2 1806 2617 -697 222 346 45 83 chr6 66284373 66284529 -122995025 - L2 LINE L2 -6 3266 3117 374 364 56 0 chr6 66284689 66284851 -122994703 - L2 LINE L2 -1 3271 3101 305 121 0 18 chr6 66288399 66288456 -122991098 + L1MD3 LINE L1 7938 8038 -4 187 219 49 81 chr6 66288664 66288787 -122990767 + L2 LINE L2 3092 3210 -103 2556 35 6 10 chr6 66288865 66289176 -122990378 + AluY SINE Alu 1 310 -1 337 275 25 17 chr6 66289189 66289309 -122990245 + HAL1 LINE L1 1758 1878 -629 335 304 45 59 chr6 66289991 66290211 -122989343 + L1M4 LINE L1 4096 4312 -1834 28 29 0 0 chr6 66290290 66290325 -122989229 + AT_rich Low_complexity Low_complexity 1 35 0 3053 99 22 5 chr6 66290325 66290769 -122988785 - L1PA11 LINE L1 -3 6171 5720 27 62 0 0 chr6 66291977 66292025 -122987529 + AT_rich Low_complexity Low_complexity 1 48 0 246 143 0 0 chr6 66292420 66292469 -122987085 + (TG)n Simple_repeat Simple_repeat 1 49 0 36 0 0 0 chr6 66293069 66293105 -122986449 + AT_rich Low_complexity Low_complexity 1 36 0 194 91 30 0 chr6 66293476 66293509 -122986045 + (TAA)n Simple_repeat Simple_repeat 2 35 0 6990 53 0 0 chr6 66294141 66295096 -122984458 - L1PA7 LINE L1 -2 6152 5219 609 282 29 24 chr6 66295112 66295318 -122984236 + MIR SINE MIR 6 212 -50 459 321 227 21 chr6 66295535 66296143 -122983411 + L2 LINE L2 1779 2511 -803 2691 196 37 40 chr6 66297083 66297281 -122982273 - MER82 DNA MER2_type -25 628 431 2265 94 0 3 chr6 66297281 66297579 -122981975 + AluSq SINE Alu 1 297 -16 2691 196 37 40 chr6 66297579 66297998 -122981556 - MER82 DNA MER2_type -222 431 13 643 262 198 20 chr6 66298056 66298400 -122981154 - LTR16C LTR ERVL -54 437 33 1650 181 7 13 chr6 66298535 66298834 -122980720 + AluJo SINE Alu 11 307 -5 21 0 0 0 chr6 66299006 66299027 -122980527 + AT_rich Low_complexity Low_complexity 1 21 0 396 330 55 21 chr6 66299629 66299865 -122979689 - L1ME LINE L1 -420 5701 5458 553 290 74 35 chr6 66299865 66300096 -122979458 - MIR SINE MIR -20 242 3 309 185 0 46 chr6 66301507 66301572 -122977982 + MER5B DNA MER1_type 1 62 -116 270 279 29 58 chr6 66301604 66301708 -122977846 + MER5A DNA MER1_type 82 182 -7 2916 201 30 32 chr6 66303363 66304075 -122975479 - MER67C LTR ERV1 0 710 1 349 322 68 7 chr6 66305401 66305547 -122974007 - L3 LINE CR1 -6 1571 1417 261 342 149 25 chr6 66305648 66305809 -122973745 + MIR SINE MIR 79 259 -3 583 263 108 39 chr6 66308469 66308701 -122970853 - MIR SINE MIR 0 262 15 492 341 31 7 chr6 66308969 66309380 -122970174 - L1ME3A LINE L1 -244 5926 5493 193 290 174 51 chr6 66309485 66309551 -122970003 - MIR SINE MIR -47 215 159 2082 164 41 27 chr6 66309551 66309989 -122969565 - MER65A LTR ERV1 0 445 2 193 290 174 51 chr6 66309989 66310060 -122969494 - MIR SINE MIR -103 159 61 182 273 94 62 chr6 66310141 66310269 -122969285 - L2 LINE L2 -1905 1409 1278 772 250 158 13 chr6 66310350 66310578 -122968976 - LTR16C LTR ERVL -2 489 229 227 283 11 11 chr6 66314797 66314889 -122964665 + (CA)n Simple_repeat Simple_repeat 2 93 0 235 210 100 60 chr6 66315153 66315253 -122964301 - MER117 DNA MER1_type -93 104 1 307 287 8 57 chr6 66315968 66316090 -122963464 + MLT1L LTR MaLR 180 295 -320 845 354 23 30 chr6 66316096 66316492 -122963062 + L1M3d LINE L1 2 394 -5497 7294 42 0 18 chr6 66316632 66317841 -122961713 - L1PA5 LINE L1 -2 6152 4955 1052 190 109 64 chr6 66318085 66318584 -122960970 + MLT1E1 LTR MaLR 17 626 0 233 366 81 8 chr6 66318607 66318842 -122960712 + L2 LINE L2 1854 2105 -1209 247 321 108 48 chr6 66318845 66319113 -122960441 + L2 LINE L2 2945 3228 -44 23 0 0 0 chr6 66319122 66319145 -122960409 + AT_rich Low_complexity Low_complexity 1 23 0 231 36 0 0 chr6 66320253 66320281 -122959273 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 305 314 58 41 chr6 66320281 66320402 -122959152 - L2 LINE L2 -14 3258 3136 751 221 58 0 chr6 66320796 66320968 -122958586 - MIR SINE MIR -12 250 69 238 319 167 46 chr6 66320998 66321722 -122957832 + L2 LINE L2 1806 2617 -697 222 346 45 83 chr6 66321959 66322115 -122957439 - L2 LINE L2 -6 3266 3117 374 364 56 0 chr6 66322275 66322437 -122957117 - L2 LINE L2 -1 3271 3101 305 121 0 18 chr6 66325985 66326042 -122953512 + L1MD3 LINE L1 7938 8038 -4 187 219 49 81 chr6 66326250 66326373 -122953181 + L2 LINE L2 3092 3210 -103 2487 40 0 13 chr6 66326451 66326753 -122952801 + AluY SINE Alu 1 298 -13 256 326 98 14 chr6 66327527 66327807 -122951747 - L1MC/D LINE L1 -502 5619 5364 24 67 0 0 chr6 66328033 66328078 -122951476 + AT_rich Low_complexity Low_complexity 1 45 0 253 236 56 45 chr6 66328765 66328854 -122950700 - L2 LINE L2 -1 3312 3223 2356 74 0 16 chr6 66329147 66329457 -122950097 + AluY SINE Alu 1 305 -6 319 308 76 28 chr6 66329482 66329693 -122949861 - L2 LINE L2 -1458 1856 1636 5182 148 26 34 chr6 66329867 66331689 -122947865 - L1MA8 LINE L1 -22 6269 4465 2119 86 11 0 chr6 66331689 66332019 -122947535 - AluY SINE Alu 0 333 1 5154 166 44 12 chr6 66332044 66332170 -122947384 - L1MA8 LINE L1 -1927 4219 4098 2317 97 3 0 chr6 66332170 66332480 -122947074 + AluY SINE Alu 1 311 0 5154 166 44 12 chr6 66332480 66333356 -122946198 - L1MA8 LINE L1 -2048 4098 3185 3596 294 114 13 chr6 66333472 66334881 -122944673 + L2 LINE L2 41 1591 -1723 787 205 70 32 chr6 66334865 66335050 -122944504 - L2 LINE L2 -1 3312 3121 * 1418 304 95 4 chr6 66335045 66335559 -122943995 - L2 LINE L2 -674 2640 2080 25 0 0 0 chr6 66336533 66336558 -122942996 + AT_rich Low_complexity Low_complexity 1 25 0 180 111 0 0 chr6 66338443 66338470 -122941084 + (A)n Simple_repeat Simple_repeat 1 27 0 2354 72 7 3 chr6 66339401 66339705 -122939849 + AluY SINE Alu 1 305 -6 533 95 24 0 chr6 66339708 66339792 -122939762 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 360 250 202 0 chr6 66339804 66339928 -122939626 - MER5A DNA MER1_type 0 189 41 502 306 14 13 chr6 66340149 66340334 -122939220 + MIR SINE MIR 20 205 -57 213 159 0 0 chr6 66340540 66340584 -122938970 + (TA)n Simple_repeat Simple_repeat 2 45 0 231 214 0 0 chr6 66340607 66340663 -122938891 + (TA)n Simple_repeat Simple_repeat 2 57 0 279 333 133 17 chr6 66341850 66341970 -122937584 - L2 LINE L2 0 3272 3139 1285 307 129 21 chr6 66342636 66343248 -122936306 + L2 LINE L2 1982 2659 -655 1278 244 139 3 chr6 66343323 66343667 -122935887 + LTR16A LTR ERVL 57 447 -3 993 263 170 26 chr6 66343667 66344216 -122935338 + L2 LINE L2 2669 3308 -5 331 250 88 44 chr6 66344530 66344666 -122934888 + MIR3 SINE MIR 37 178 -30 341 207 36 54 chr6 66346126 66346237 -122933317 + MIR SINE MIR 17 125 -137 339 226 132 19 chr6 66346242 66346348 -122933206 + MER94 DNA DNA 6 123 -11 184 273 23 68 chr6 66346555 66346643 -122932911 + L2 LINE L2 2941 3024 -248 614 307 75 15 chr6 66346716 66346983 -122932571 + L2 LINE L2 3028 3310 -3 184 265 7 103 chr6 66346974 66347110 -122932444 + L3 LINE CR1 1191 1313 -264 * 382 258 122 58 chr6 66347367 66347599 -122931955 - MIR SINE MIR -12 250 1 527 317 44 26 chr6 66348102 66348329 -122931225 + MIR SINE MIR 26 256 -6 444 171 108 45 chr6 66348871 66348982 -122930572 + L2 LINE L2 3196 3313 0 228 318 28 28 chr6 66349476 66349583 -122929971 + MIR SINE MIR 156 262 0 31 0 0 0 chr6 66350466 66350497 -122929057 + AT_rich Low_complexity Low_complexity 1 31 0 1057 224 57 4 chr6 66350700 66350928 -122928626 + MIR SINE MIR 23 262 0 1775 146 16 50 chr6 66351217 66351539 -122928015 + AluJo SINE Alu 1 311 -1 508 320 53 18 chr6 66351768 66351996 -122927558 + MIR SINE MIR 27 262 0 799 294 85 4 chr6 66352202 66352450 -122927104 + MLT1J LTR MaLR 69 336 -175 492 334 95 28 chr6 66352898 66353320 -122926234 - LTR16A LTR ERVL 0 450 1 25 31 0 0 chr6 66354256 66354288 -122925266 + AT_rich Low_complexity Low_complexity 1 32 0 252 200 0 0 chr6 66355532 66355587 -122923967 + (TTA)n Simple_repeat Simple_repeat 2 56 0 881 219 0 0 chr6 66355752 66355916 -122923638 - MER58B DNA MER1_type 0 341 178 197 339 25 59 chr6 66356095 66356213 -122923341 + MIR3 SINE MIR 47 160 -48 585 0 0 0 chr6 66356289 66356354 -122923200 + (AATAG)n Simple_repeat Simple_repeat 3 67 0 2031 136 0 13 chr6 66356507 66356809 -122922745 + AluSq SINE Alu 1 298 -15 35 92 0 0 chr6 66356953 66357051 -122922503 + AT_rich Low_complexity Low_complexity 1 98 0 996 216 9 9 chr6 66358502 66358720 -122920834 + MER20 DNA MER1_type 2 219 0 186 103 0 0 chr6 66358969 66358998 -122920556 + (TC)n Simple_repeat Simple_repeat 2 30 0 321 26 0 0 chr6 66358998 66359036 -122920518 + (CA)n Simple_repeat Simple_repeat 1 38 0 183 42 0 0 chr6 66360020 66360044 -122919510 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 270 270 46 52 chr6 66360750 66360924 -122918630 - Charlie7 DNA MER1_type -2 2610 2438 1262 296 34 24 chr6 66362544 66363143 -122916411 - L2 LINE L2 -2 3311 2714 621 230 0 0 chr6 66363144 66363270 -122916284 + L1MC4a LINE L1 6657 6782 -1026 713 309 0 18 chr6 66363315 66363538 -122916016 - L2 LINE L2 -939 2375 2157 187 233 23 81 chr6 66363740 66363826 -122915728 - L2 LINE L2 -1041 2273 2193 561 271 89 23 chr6 66364205 66364419 -122915135 - MIR SINE MIR -24 238 11 33 0 0 0 chr6 66365693 66365726 -122913828 + AT_rich Low_complexity Low_complexity 1 33 0 22 70 0 0 chr6 66366459 66366502 -122913052 + AT_rich Low_complexity Low_complexity 1 43 0 661 266 116 8 chr6 66366858 66367125 -122912429 + L1ME4a LINE L1 5312 5607 -557 1091 137 0 23 chr6 66367136 66367311 -122912243 + THE1C LTR MaLR 1 171 -204 368 242 96 59 chr6 66367357 66367576 -122911978 + L1ME4a LINE L1 5676 5902 -262 21 36 0 0 chr6 66367624 66367652 -122911902 + AT_rich Low_complexity Low_complexity 1 28 0 2337 82 0 16 chr6 66367971 66368289 -122911265 + AluSq SINE Alu 1 313 0 181 125 31 0 chr6 66368654 66368686 -122910868 - MIR3 SINE MIR 0 208 176 204 144 56 11 chr6 66368882 66368972 -122910582 + (TA)n Simple_repeat Simple_repeat 1 94 0 303 243 78 10 chr6 66370095 66370198 -122909356 + L1ME4a LINE L1 5969 6078 -43 346 217 0 0 chr6 66370544 66370627 -122908927 - MER53 DNA DNA -19 170 88 * 442 114 20 161 chr6 66370623 66370693 -122908861 - MER53 DNA DNA -58 131 91 2329 105 3 3 chr6 66370693 66371006 -122908548 + AluSq SINE Alu 1 313 0 442 114 20 161 chr6 66371006 66371084 -122908470 - MER53 DNA DNA -98 91 4 1579 163 56 31 chr6 66371087 66371375 -122908179 - AluJb SINE Alu -17 295 1 707 236 133 15 chr6 66372249 66372444 -122907110 + MER58A DNA MER1_type 2 219 -5 185 310 14 14 chr6 66374110 66374181 -122905373 - MIR SINE MIR 0 262 192 2350 79 7 0 chr6 66374414 66374717 -122904837 - AluSp SINE Alu -8 305 1 270 288 234 11 chr6 66374816 66374993 -122904561 - MIR SINE MIR -14 248 32 884 211 74 0 chr6 66375955 66376130 -122903424 + MER5A DNA MER1_type 2 189 0 1901 135 13 28 chr6 66377216 66377534 -122902020 - LTR26 LTR ERV1 0 603 291 243 180 140 0 chr6 66377564 66377614 -122901940 - LTR26 LTR ERV1 -285 318 262 1563 143 16 0 chr6 66377675 66377920 -122901634 - LTR26 LTR ERV1 -354 249 1 32 0 0 0 chr6 66378496 66378528 -122901026 + AT_rich Low_complexity Low_complexity 1 32 0 1143 223 60 6 chr6 66378663 66379025 -122900529 + Charlie4a DNA MER1_type 17 508 0 1825 166 55 0 chr6 66379923 66380248 -122899306 - MER2 DNA MER2_type -1 343 1 496 254 59 75 chr6 66380793 66381035 -122898519 + MIR SINE MIR 2 235 -27 1942 134 14 0 chr6 66381253 66381536 -122898018 + AluSx SINE Alu 5 291 -21 264 88 0 0 chr6 66381536 66381570 -122897984 + (GGGGA)n Simple_repeat Simple_repeat 3 36 0 587 129 0 10 chr6 66381570 66381671 -122897883 + (GGAA)n Simple_repeat Simple_repeat 4 103 0 208 308 42 58 chr6 66382833 66382953 -122896601 + L2 LINE L2 3119 3236 -36 207 170 0 0 chr6 66383163 66383210 -122896344 + (CA)n Simple_repeat Simple_repeat 1 47 0 337 318 204 3 chr6 66383436 66383779 -122895775 + L1ME4a LINE L1 5583 5994 -127 196 349 111 26 chr6 66384075 66384264 -122895290 - L3b LINE CR1 -125 1458 1254 430 320 67 21 chr6 66384417 66384611 -122894943 - MIR SINE MIR -31 231 29 224 216 40 0 chr6 66384828 66384902 -122894652 + (TA)n Simple_repeat Simple_repeat 2 78 0 315 0 0 0 chr6 66385928 66385963 -122893591 + (CA)n Simple_repeat Simple_repeat 1 35 0 1992 131 16 13 chr6 66386459 66386764 -122892790 - AluSq SINE Alu -7 306 1 259 235 0 0 chr6 66386800 66386851 -122892703 - L2 LINE L2 0 3272 3222 31 26 0 0 chr6 66386945 66386983 -122892571 + AT_rich Low_complexity Low_complexity 1 38 0 251 320 88 0 chr6 66388213 66388338 -122891216 - MIR SINE MIR -60 202 67 204 286 0 0 chr6 66390782 66390831 -122888723 + CT-rich Low_complexity Low_complexity 2 50 0 210 432 60 32 chr6 66390982 66391167 -122888387 + L2 LINE L2 2982 3171 -101 532 314 0 46 chr6 66391178 66391353 -122888201 - MER91A DNA MER1_type -8 188 22 329 320 10 10 chr6 66391350 66391447 -122888107 + L2 LINE L2 3172 3268 -4 * 413 286 36 29 chr6 66391960 66392100 -122887454 + L3 LINE CR1 1370 1510 -67 857 242 23 18 chr6 66392462 66392681 -122886873 + MIR SINE MIR 33 252 -10 276 341 132 0 chr6 66393421 66393588 -122885966 + L3 LINE CR1 781 969 -608 30 0 0 0 chr6 66393663 66393693 -122885861 + AT_rich Low_complexity Low_complexity 1 30 0 208 225 0 0 chr6 66393796 66393836 -122885718 - L2 LINE L2 -75 3238 3199 342 234 179 107 chr6 66393845 66394135 -122885419 + L2 LINE L2 3003 3313 0 2450 51 3 0 chr6 66394499 66394793 -122884761 + AluY SINE Alu 1 295 -16 457 195 203 0 chr6 66395942 66396070 -122883484 - MIR SINE MIR -35 227 74 281 188 29 14 chr6 66396399 66396468 -122883086 + MER116 DNA Mariner 10 79 -1 380 274 123 54 chr6 66396474 66396678 -122882876 + MIR SINE MIR 8 225 -37 687 196 27 82 chr6 66397595 66397814 -122881740 + MLT1K LTR MaLR 368 574 -14 467 307 43 12 chr6 66397898 66398061 -122881493 - MIR3 SINE MIR -7 201 34 22 35 0 0 chr6 66398340 66398369 -122881185 + AT_rich Low_complexity Low_complexity 1 29 0 32 57 0 0 chr6 66398468 66398521 -122881033 + AT_rich Low_complexity Low_complexity 1 53 0 439 253 101 53 chr6 66399102 66399477 -122880077 + L1ME4a LINE L1 5727 6119 -2 411 285 70 35 chr6 66400390 66400562 -122878992 - MER5B DNA MER1_type 0 178 1 445 269 178 14 chr6 66401729 66401937 -122877617 + MIR SINE MIR 8 249 -13 381 307 69 14 chr6 66403040 66403258 -122876296 + L1ME4a LINE L1 5712 5941 -180 24 0 0 0 chr6 66403347 66403371 -122876183 + AT_rich Low_complexity Low_complexity 1 24 0 471 153 35 0 chr6 66403692 66403777 -122875777 - MSTA LTR MaLR 0 428 341 2030 139 141 5 chr6 66403777 66404145 -122875409 - MSTA LTR MaLR -10 418 1 2052 122 7 0 chr6 66404323 66404618 -122874936 - AluSx SINE Alu -15 297 1 263 259 158 9 chr6 66406894 66407040 -122872514 - MIR SINE MIR -68 140 3 203 203 16 0 chr6 66407287 66407351 -122872203 + GA-rich Low_complexity Low_complexity 3 67 0 323 246 186 22 chr6 66407705 66407888 -122871666 + MER20 DNA MER1_type 2 214 -5 1840 250 37 24 chr6 66407929 66408558 -122870996 + L1ME1 LINE L1 5318 6018 -148 4384 133 6 4 chr6 66408594 66409301 -122870253 - L1PA16 LINE L1 0 6166 5459 326 273 110 96 chr6 66409350 66409559 -122869995 + L2 LINE L2 3102 3313 0 237 108 0 0 chr6 66412190 66412227 -122867327 + (TC)n Simple_repeat Simple_repeat 2 38 0 189 132 0 0 chr6 66412229 66412267 -122867287 + (CA)n Simple_repeat Simple_repeat 1 38 0 1600 138 19 2 chr6 66412857 66413142 -122866412 - L1P5 LINE L1 -421 5735 5454 1081 71 13 0 chr6 66413272 66413426 -122866128 - L1P LINE L1 -1734 4412 4257 303 226 0 0 chr6 66413498 66413560 -122865994 - MIR SINE MIR -75 187 126 2743 209 24 22 chr6 66413563 66414450 -122865104 + L1MD2 LINE L1 4996 5889 -470 4266 111 38 46 chr6 66414463 66415221 -122864333 - Tigger3(Golem) DNA MER2_type -1 3028 2277 689 189 0 0 chr6 66415209 66415320 -122864234 - Tigger3(Golem) DNA MER2_type -2918 111 1 * 389 258 88 25 chr6 66416025 66416122 -122863432 + MIR SINE MIR 16 128 -134 2270 108 0 0 chr6 66416122 66416417 -122863137 + AluSg SINE Alu 3 297 -13 389 258 88 25 chr6 66416417 66416478 -122863076 + MIR SINE MIR 128 184 -78 1764 151 8 0 chr6 66416867 66417132 -122862422 + AluSx SINE Alu 37 303 -9 224 227 0 0 chr6 66418132 66418176 -122861378 + (CA)n Simple_repeat Simple_repeat 1 44 0 24 67 0 0 chr6 66418961 66419006 -122860548 + AT_rich Low_complexity Low_complexity 1 45 0 219 313 84 0 chr6 66419720 66419803 -122859751 - MIR SINE MIR -72 190 101 1006 192 77 146 chr6 66420085 66420476 -122859078 - MLT1A1 LTR MaLR -1 364 1 358 257 38 87 chr6 66420581 66420764 -122858790 + HAL1 LINE L1 1 174 -2333 432 55 0 0 chr6 66422255 66422310 -122857244 + (TG)n Simple_repeat Simple_repeat 2 56 0 240 239 164 0 chr6 66422749 66422816 -122856738 - MIR3 SINE MIR -48 160 83 252 0 0 0 chr6 66422942 66422970 -122856584 + (CA)n Simple_repeat Simple_repeat 2 29 0 1925 121 3 40 chr6 66424536 66424854 -122854700 + AluSx SINE Alu 1 307 0 2092 133 3 0 chr6 66425373 66425667 -122853887 + AluSq SINE Alu 1 295 -18 2229 102 0 0 chr6 66425815 66426108 -122853446 + AluSq SINE Alu 1 293 -20 29 0 0 0 chr6 66426108 66426137 -122853417 + AT_rich Low_complexity Low_complexity 1 29 0 37 52 0 0 chr6 66426232 66426290 -122853264 + AT_rich Low_complexity Low_complexity 1 58 0 2461 49 0 0 chr6 66426479 66426799 -122852755 - AluY SINE Alu 0 320 1 241 176 0 39 chr6 66428100 66428151 -122851403 + (TCTTG)n Simple_repeat Simple_repeat 2 50 0 22 35 0 0 chr6 66428434 66428463 -122851091 + AT_rich Low_complexity Low_complexity 1 29 0 367 341 50 6 chr6 66429385 66429567 -122849987 - MIR SINE MIR -48 214 25 185 62 0 31 chr6 66431637 66431669 -122847885 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 27 29 0 0 chr6 66432348 66432382 -122847172 + AT_rich Low_complexity Low_complexity 1 34 0 288 340 10 0 chr6 66432491 66432588 -122846966 - MIR SINE MIR -25 237 140 1600 140 22 4 chr6 66432588 66432859 -122846695 + MLT1B LTR MaLR 1 276 -114 30 45 0 0 chr6 66433545 66433589 -122845965 + AT_rich Low_complexity Low_complexity 1 44 0 682 194 8 0 chr6 66433590 66433719 -122845835 + MLT1B LTR MaLR 261 390 0 329 274 263 64 chr6 66434036 66434394 -122845160 + L2 LINE L2 2876 3304 -9 249 288 0 27 chr6 66434406 66434479 -122845075 + GA-rich Low_complexity Low_complexity 3 73 0 440 322 39 43 chr6 66434640 66434870 -122844684 + MIR SINE MIR 20 248 -14 4561 170 19 12 chr6 66434959 66434977 -122844577 + L1MB7 LINE L1 5187 5203 -981 1924 140 52 27 chr6 66434977 66435306 -122844248 + MER1B DNA MER1_type 1 337 0 4561 170 19 12 chr6 66435306 66436279 -122843275 + L1MB7 LINE L1 5203 6184 0 207 0 0 0 chr6 66438214 66438237 -122841317 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 380 304 169 0 chr6 66440436 66440584 -122838970 + MER5A DNA MER1_type 17 189 0 467 290 78 28 chr6 66440738 66440955 -122838599 - MIR SINE MIR -23 239 12 229 241 72 12 chr6 66441221 66441304 -122838250 + LTR9B LTR ERV1 477 564 -80 189 0 0 0 chr6 66441305 66441326 -122838228 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 340 209 147 58 chr6 66441364 66441464 -122838090 - L1ME4a LINE L1 -38 6083 5993 2354 89 0 0 chr6 66441464 66441755 -122837799 + AluSc SINE Alu 1 291 -18 340 209 147 58 chr6 66441755 66441879 -122837675 - L1ME4a LINE L1 -128 5993 5839 1110 114 30 35 chr6 66443358 66443559 -122835995 + L1MA4 LINE L1 6095 6294 -6 1978 144 7 0 chr6 66443620 66443911 -122835643 - AluSx SINE Alu -19 293 1 295 292 83 21 chr6 66444056 66444152 -122835402 - L2 LINE L2 -1 3271 3170 2142 100 6 26 chr6 66444439 66444750 -122834804 + AluSx SINE Alu 1 305 -7 219 188 0 0 chr6 66444857 66444905 -122834649 + CT-rich Low_complexity Low_complexity 1 48 0 1593 183 0 69 chr6 66445771 66446088 -122833466 + AluJo SINE Alu 1 295 -17 309 294 20 0 chr6 66446429 66446531 -122833023 + MIR SINE MIR 87 190 -72 387 311 82 15 chr6 66447124 66447330 -122832224 - MIR SINE MIR -9 253 34 1692 270 103 18 chr6 66447583 66448153 -122831401 - MLT2E LTR ERVL 0 628 10 204 250 17 33 chr6 66448162 66448222 -122831332 - L2 LINE L2 -660 2654 2596 22 0 0 0 chr6 66448544 66448566 -122830988 + AT_rich Low_complexity Low_complexity 1 22 0 1564 99 0 14 chr6 66449158 66449369 -122830185 - AluSg/x SINE Alu -5 307 100 944 239 68 39 chr6 66450116 66450425 -122829129 - LTR27 LTR ERV1 0 636 319 585 128 39 0 chr6 66450404 66450506 -122829048 - LTR28 LTR ERV1 -914 106 1 * 735 221 174 0 chr6 66450594 66450784 -122828770 - Charlie8 DNA MER1_type -2154 263 41 387 355 76 56 chr6 66451042 66451451 -122828103 + L2 LINE L2 2852 3268 -4 213 369 21 21 chr6 66454221 66454362 -122825192 + MER5A DNA MER1_type 4 144 -45 * 236 294 35 47 chr6 66454295 66454380 -122825174 - MER5A DNA MER1_type -66 123 40 2204 110 0 38 chr6 66454603 66454922 -122824632 + AluSq SINE Alu 1 307 -6 5714 241 59 68 chr6 66454931 66457084 -122822470 + L1MC4a LINE L1 4860 6982 -826 1550 192 101 21 chr6 66457084 66457422 -122822132 + MLT1A1 LTR MaLR 1 365 0 5714 241 59 68 chr6 66457422 66458024 -122821530 + L1MC4a LINE L1 6982 7588 -220 438 259 134 20 chr6 66458043 66458244 -122821310 + L1MC4 LINE L1 7689 7912 -130 213 231 46 0 chr6 66458246 66458311 -122821243 + (TA)n Simple_repeat Simple_repeat 2 69 0 365 189 49 57 chr6 66458351 66458473 -122821081 + L1MC4 LINE L1 7922 8042 0 1894 117 94 28 chr6 66458495 66458847 -122820707 - THE1C LTR MaLR 0 375 1 647 283 60 11 chr6 66461733 66462083 -122817471 - LTR16A LTR ERVL -76 374 8 217 271 104 52 chr6 66462828 66462924 -122816630 + MIR SINE MIR 49 149 -59 299 59 0 59 chr6 66463629 66463680 -122815874 + (TC)n Simple_repeat Simple_repeat 2 49 0 198 0 0 0 chr6 66463680 66463702 -122815852 + (CA)n Simple_repeat Simple_repeat 1 22 0 239 294 0 0 chr6 66463816 66463884 -122815670 + GA-rich Low_complexity Low_complexity 3 70 0 227 274 27 48 chr6 66463827 66463973 -122815581 + (CAGAGA)n Simple_repeat Simple_repeat 2 144 0 * 195 298 33 83 chr6 66464615 66464736 -122814818 + MIR SINE MIR 102 216 -46 21 71 0 0 chr6 66465673 66465715 -122813839 + AT_rich Low_complexity Low_complexity 1 42 0 2295 153 60 0 chr6 66466030 66466430 -122813124 + MSTB LTR MaLR 1 424 -2 2152 120 6 43 chr6 66467736 66468086 -122811468 - MER1B DNA MER1_type 0 337 1 4521 127 18 14 chr6 66468309 66469087 -122810467 + L1PB4 LINE L1 5375 6155 -1 21 36 0 0 chr6 66469230 66469258 -122810296 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr6 66469655 66469691 -122809863 + AT_rich Low_complexity Low_complexity 1 36 0 276 185 22 98 chr6 66469692 66469784 -122809770 + Charlie7 DNA MER1_type 1 85 -2527 258 209 23 62 chr6 66469788 66469917 -122809637 + Charlie7 DNA MER1_type 2442 2565 -47 295 193 148 0 chr6 66470470 66470558 -122808996 - MER33 DNA MER1_type -22 302 202 726 243 52 5 chr6 66470629 66470839 -122808715 - MER33 DNA MER1_type -104 220 1 1126 144 6 0 chr6 66471003 66471177 -122808377 + AluSg/x SINE Alu 136 310 -2 213 300 43 14 chr6 66471423 66471493 -122808061 + L2 LINE L2 3211 3282 -31 2117 83 29 39 chr6 66472047 66472359 -122807195 - AluSg SINE Alu 0 310 2 203 184 0 0 chr6 66473377 66473415 -122806139 + A-rich Low_complexity Low_complexity 1 38 0 2281 98 0 0 chr6 66473761 66474057 -122805497 + AluY SINE Alu 1 296 -15 202 345 50 22 chr6 66474099 66474238 -122805316 - L2 LINE L2 -4 3309 3167 788 220 106 0 chr6 66474294 66474530 -122805024 + MIR SINE MIR 2 262 0 292 357 96 58 chr6 66474691 66475428 -122804126 - L2 LINE L2 -380 2934 2170 1963 163 2 118 chr6 66475439 66475912 -122803642 - MER47B DNA MER2_type 0 418 1 1880 124 79 28 chr6 66476040 66476396 -122803158 + THE1C LTR MaLR 2 375 0 30 59 0 0 chr6 66476857 66476908 -122802646 + AT_rich Low_complexity Low_complexity 1 51 0 2150 133 10 0 chr6 66477163 66477463 -122802091 - AluSx SINE Alu -9 303 1 436 215 269 34 chr6 66477831 66477980 -122801574 - MER5A DNA MER1_type -5 184 1 1493 197 36 14 chr6 66478207 66478568 -122800986 + LTR52 LTR ERVL 51 419 -2 3135 261 73 44 chr6 66478800 66479629 -122799925 + HAL1 LINE L1 773 1577 -930 2491 85 0 0 chr6 66479629 66479934 -122799620 - AluY SINE Alu -6 305 1 3135 261 73 44 chr6 66479934 66480780 -122798774 + HAL1 LINE L1 1577 2496 -11 578 300 125 31 chr6 66481828 66482211 -122797343 - L2 LINE L2 -983 2331 1913 548 314 83 0 chr6 66482236 66482465 -122797089 - L2 LINE L2 -2074 1240 993 393 303 13 17 chr6 66482483 66482697 -122796857 - L1ME LINE L1 -396 5725 5511 240 177 25 13 chr6 66483022 66483101 -122796453 + CT-rich Low_complexity Low_complexity 1 80 0 2108 111 0 20 chr6 66483495 66483801 -122795753 - AluSx SINE Alu -12 300 1 268 299 37 47 chr6 66483822 66483929 -122795625 - MIR SINE MIR -80 128 23 2172 149 31 8 chr6 66484104 66484460 -122795094 - THE1B LTR MaLR 0 364 1 2184 115 0 0 chr6 66484569 66484864 -122794690 - AluSg SINE Alu -15 295 1 302 261 23 11 chr6 66484947 66485035 -122794519 + (CATA)n Simple_repeat Simple_repeat 2 90 0 24 0 0 0 chr6 66486098 66486122 -122793432 + AT_rich Low_complexity Low_complexity 1 24 0 512 268 221 0 chr6 66488264 66488477 -122791077 + MIR SINE MIR 2 261 -1 22 0 0 0 chr6 66488592 66488614 -122790940 + AT_rich Low_complexity Low_complexity 1 22 0 2189 59 4 4 chr6 66488655 66488928 -122790626 - AluY SINE Alu -38 273 1 2205 91 0 7 chr6 66490014 66490340 -122789214 + AluY SINE Alu 1 324 0 742 185 6 9 chr6 66490835 66491063 -122788491 + MLT1A1 LTR MaLR 1 303 -71 1895 105 12 4 chr6 66491452 66491710 -122787844 + AluSc SINE Alu 33 292 -17 626 178 19 0 chr6 66491798 66491905 -122787649 + MIR SINE MIR 36 144 -118 247 279 0 25 chr6 66492275 66492354 -122787200 + L1MEd LINE L1 496 572 -5547 316 238 12 36 chr6 66492425 66492641 -122786913 + L1MEd LINE L1 687 1090 -5029 406 313 77 6 chr6 66492668 66492991 -122786563 + L1MEd LINE L1 1183 1528 -4782 1550 283 73 17 chr6 66493570 66494377 -122785177 + L1M4 LINE L1 3479 4330 -1816 316 149 37 56 chr6 66494648 66494755 -122784799 + L1MEd LINE L1 2311 2415 -3714 230 284 91 0 chr6 66494973 66495061 -122784493 + L1ME3A LINE L1 6039 6134 -36 428 267 122 32 chr6 66495099 66495320 -122784234 + L1ME3 LINE L1 4429 4669 -1477 226 247 0 26 chr6 66495338 66495415 -122784139 + L1MC4 LINE L1 6628 6702 -1340 223 220 34 0 chr6 66495415 66495474 -122784080 + (CAGAGA)n Simple_repeat Simple_repeat 1 61 0 789 246 37 62 chr6 66495474 66495828 -122783726 - MLT2C1 LTR ERVL -52 345 1 347 269 129 33 chr6 66496081 66496415 -122783139 + L1ME3 LINE L1 4995 5360 -786 248 340 25 12 chr6 66496622 66496818 -122782736 + L1ME3 LINE L1 5505 5702 -460 2221 102 3 7 chr6 66496818 66497121 -122782433 + AluSx SINE Alu 1 302 -10 830 163 0 7 chr6 66497140 66497275 -122782279 + FLAM_C SINE Alu 9 142 -1 380 268 134 9 chr6 66497275 66497506 -122782048 + L1ME3 LINE L1 5693 5952 -210 18580 178 18 10 chr6 66497764 66504482 -122775072 - L1PA13 LINE L1 -19 6795 1 2395 100 0 3 chr6 66504499 66504808 -122774746 - AluSx SINE Alu -4 308 1 22 0 0 0 chr6 66507310 66507332 -122772222 + AT_rich Low_complexity Low_complexity 1 22 0 255 303 105 25 chr6 66507712 66507874 -122771680 - L2 LINE L2 -540 2774 2600 650 259 26 0 chr6 66508040 66508233 -122771321 + MER58A DNA MER1_type 1 198 -26 244 219 31 0 chr6 66508510 66508574 -122770980 + HsTC2 DNA Tc2 10 75 -1823 360 302 9 0 chr6 66508581 66508687 -122770867 - L1MEd LINE L1 -5470 649 543 497 227 7 43 chr6 66508729 66508870 -122770684 - MSTC LTR MaLR -292 136 1 1597 209 36 65 chr6 66508870 66509392 -122770162 + L1MA9 LINE L1 5646 6152 -160 2106 137 40 20 chr6 66509393 66509743 -122769811 - THE1B LTR MaLR -7 357 1 542 132 33 50 chr6 66509813 66509934 -122769620 + L1MA9 LINE L1 6193 6311 -1 245 178 32 16 chr6 66510811 66510884 -122768670 + HsTC2 DNA Tc2 1822 1895 -3 194 255 21 0 chr6 66511959 66512006 -122767548 + L2 LINE L2 3219 3266 -6 2096 116 14 6 chr6 66513554 66514038 -122765516 - L1P4 LINE L1 -587 5574 5084 280 188 12 25 chr6 66514038 66514118 -122765436 + L1PA13 LINE L1 6080 6158 -5 2372 91 0 0 chr6 66514123 66514432 -122765122 - AluSc SINE Alu 0 309 1 979 274 99 12 chr6 66514542 66514954 -122764600 + LTR16A LTR ERVL 1 448 -2 589 246 0 0 chr6 66515115 66515233 -122764321 + FLAM_A SINE Alu 1 118 -15 503 133 78 0 chr6 66515260 66515350 -122764204 + FRAM SINE Alu 75 171 -5 625 263 76 34 chr6 66516065 66516301 -122763253 - MER112 DNA MER1_type -14 246 1 330 305 113 19 chr6 66516305 66516561 -122762993 - L2 LINE L2 -1305 2009 1730 327 198 17 4 chr6 66517545 66517671 -122761883 - MER58B DNA MER1_type -9 332 39 467 275 94 19 chr6 66518584 66518744 -122760810 - MIR SINE MIR -71 191 20 1025 178 22 0 chr6 66518759 66518944 -122760610 + MER5A DNA MER1_type 1 189 0 3107 140 82 0 chr6 66520818 66521305 -122758249 - MER1A DNA MER1_type 0 527 1 389 340 81 6 chr6 66521511 66521747 -122757807 + MIR SINE MIR 3 250 -12 2295 117 0 0 chr6 66521839 66522146 -122757408 + AluSx SINE Alu 1 307 -5 439 206 168 13 chr6 66523035 66523190 -122756364 - MIR SINE MIR -35 227 49 2041 121 10 3 chr6 66523683 66523981 -122755573 - AluSg SINE Alu -10 300 1 25 0 0 0 chr6 66527637 66527662 -122751892 + AT_rich Low_complexity Low_complexity 1 25 0 2040 150 0 0 chr6 66528417 66528723 -122750831 + AluJb SINE Alu 1 306 -6 200 122 0 24 chr6 66529211 66529252 -122750302 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 24 0 0 0 chr6 66530190 66530214 -122749340 + AT_rich Low_complexity Low_complexity 1 24 0 249 108 0 0 chr6 66530429 66530466 -122749088 + (A)n Simple_repeat Simple_repeat 1 37 0 27 0 0 0 chr6 66532997 66533024 -122746530 + AT_rich Low_complexity Low_complexity 1 27 0 245 279 106 0 chr6 66533190 66533294 -122746260 - L1MC/D LINE L1 -1901 5907 5793 21 0 0 0 chr6 66533316 66533337 -122746217 + AT_rich Low_complexity Low_complexity 1 21 0 353 353 134 11 chr6 66534700 66534983 -122744571 - L2 LINE L2 -15 3257 2940 315 194 194 28 chr6 66535331 66535439 -122744115 - MIR SINE MIR -63 145 20 211 286 71 41 chr6 66538863 66538961 -122740593 + MIR SINE MIR 9 109 -153 278 177 88 75 chr6 66540067 66540214 -122739340 - L1ME4a LINE L1 0 6121 5973 692 220 41 60 chr6 66540311 66540529 -122739025 + MIR SINE MIR 25 238 -24 433 282 94 11 chr6 66540586 66540767 -122738787 - L1MC/D LINE L1 -443 5678 5483 180 77 0 0 chr6 66542713 66542739 -122736815 + (TA)n Simple_repeat Simple_repeat 2 27 0 298 214 0 71 chr6 66542850 66542934 -122736620 - MER5A DNA MER1_type -80 109 32 420 296 30 45 chr6 66543080 66543212 -122736342 - L2 LINE L2 -6 3266 3137 3575 83 2 0 chr6 66543618 66544097 -122735457 - L1PA13 LINE L1 -318 5845 5366 1818 144 13 0 chr6 66544097 66544385 -122735169 + L1PA13 LINE L1 5856 6158 -5 321 169 0 0 chr6 66544411 66544470 -122735084 + (TG)n Simple_repeat Simple_repeat 2 60 0 30 69 0 0 chr6 66544759 66544817 -122734737 + AT_rich Low_complexity Low_complexity 1 58 0 296 289 40 54 chr6 66544860 66545009 -122734545 + MIR3 SINE MIR 60 206 -2 251 287 59 22 chr6 66547608 66547880 -122731674 + L1M4 LINE L1 2199 2480 -3666 21 0 0 0 chr6 66547990 66548011 -122731543 + AT_rich Low_complexity Low_complexity 1 21 0 310 171 0 102 chr6 66548405 66548493 -122731061 - MER116 DNA Mariner -1 79 1 1052 236 55 50 chr6 66548643 66549007 -122730547 + LTR16A1 LTR ERVL 88 453 -4 432 311 30 15 chr6 66550237 66550372 -122729182 + MIR3 SINE MIR 51 187 -21 339 336 51 0 chr6 66550522 66550659 -122728895 + MIR SINE MIR 81 224 -38 391 313 64 101 chr6 66550832 66551238 -122728316 + L2 LINE L2 2882 3272 0 615 75 11 75 chr6 66552227 66552414 -122727140 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 2266 118 0 0 chr6 66554008 66554312 -122725242 - AluSg SINE Alu -4 306 3 311 64 0 21 chr6 66554628 66554675 -122724879 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 710 264 36 21 chr6 66555101 66555294 -122724260 + MIR SINE MIR 18 213 -49 1306 264 44 17 chr6 66556492 66557012 -122722542 + L1MB7 LINE L1 1088 1621 -4682 5859 230 62 40 chr6 66557014 66558779 -122720775 + L1MB7 LINE L1 2166 4007 -2375 1989 71 54 17 chr6 66558779 66559073 -122720481 + AluY SINE Alu 7 311 0 5859 230 62 40 chr6 66559073 66559430 -122720124 + L1MB7 LINE L1 4007 4354 -2028 1092 204 25 0 chr6 66559431 66559676 -122719878 + L1MB7 LINE L1 4680 4930 -1452 7178 54 1 0 chr6 66559678 66560625 -122718929 + L1PA5 LINE L1 5200 6147 -7 356 280 0 50 chr6 66560758 66560858 -122718696 + MLT1L LTR MaLR 419 513 -102 313 109 0 0 chr6 66560855 66560901 -122718653 + MLT1K LTR MaLR 519 564 -24 * 2265 216 44 14 chr6 66561008 66561572 -122717982 + L1MB7 LINE L1 5829 6409 -11 386 299 19 58 chr6 66561621 66561929 -122717625 + HAL1b LINE L1 350 645 -703 482 201 17 84 chr6 66562054 66562233 -122717321 + L1MC5 LINE L1 7360 7526 -435 270 274 89 59 chr6 66562314 66562449 -122717105 + L1ME3A LINE L1 5964 6102 -68 317 278 114 34 chr6 66562540 66562716 -122716838 - MIR SINE MIR 0 262 73 214 149 0 202 chr6 66562840 66562934 -122716620 - L2 LINE L2 -4 3309 3235 231 36 0 0 chr6 66563320 66563348 -122716206 + (TC)n Simple_repeat Simple_repeat 1 28 0 184 352 259 5 chr6 66563438 66563654 -122715900 + L3 LINE CR1 1288 1558 -19 301 227 31 10 chr6 66563895 66564000 -122715554 + MIR SINE MIR 39 146 -62 552 278 72 6 chr6 66564513 66564693 -122714861 + MIR SINE MIR 20 211 -51 740 294 51 13 chr6 66566036 66566271 -122713283 + MIR SINE MIR 19 262 0 246 342 0 0 chr6 66566827 66566906 -122712648 - L2 LINE L2 -6 3307 3229 225 0 0 0 chr6 66567065 66567090 -122712464 + (T)n Simple_repeat Simple_repeat 1 25 0 312 266 58 72 chr6 66567831 66567970 -122711584 - L2 LINE L2 -222 3050 2914 808 316 62 15 chr6 66568031 66568436 -122711118 - LTR16A LTR ERVL -9 441 18 615 333 51 54 chr6 66568465 66568856 -122710698 - L2 LINE L2 -465 2849 2460 260 290 99 85 chr6 66568922 66569274 -122710280 + MLT1I LTR MaLR 42 398 -11 327 25 0 0 chr6 66569314 66569354 -122710200 + (TG)n Simple_repeat Simple_repeat 2 41 0 357 320 73 24 chr6 66569355 66569561 -122709993 - L2 LINE L2 -911 2403 2188 188 216 0 0 chr6 66571156 66571193 -122708361 - L2 LINE L2 -12 3301 3265 202 267 9 121 chr6 66571751 66571867 -122707687 + MER5B DNA MER1_type 76 178 0 1871 123 3 17 chr6 66572150 66572451 -122707103 - L1PA15 LINE L1 0 6165 5869 9806 221 36 17 chr6 66572454 66574519 -122705035 - L1PA13 LINE L1 -3404 3393 1230 198 0 0 0 chr6 66574519 66574541 -122705013 + (CAG)n Simple_repeat Simple_repeat 1 22 0 9806 221 36 17 chr6 66574541 66575795 -122703759 - L1PA13 LINE L1 -5567 1230 1 338 283 34 51 chr6 66576039 66576216 -122703338 - MIR SINE MIR -40 222 49 7620 23 0 0 chr6 66576351 66577288 -122702266 - L1PA4 LINE L1 -3 6152 5218 10756 37 1 1 chr6 66577288 66578597 -122700957 + L1PA4 LINE L1 3903 5211 -935 526 368 143 16 chr6 66578770 66579286 -122700268 + L2 LINE L2 2181 2762 -552 259 281 16 74 chr6 66579286 66579407 -122700147 - LTR67 LTR ERVL -10 547 434 306 343 60 101 chr6 66579807 66580154 -122699400 + L2 LINE L2 2940 3272 0 237 33 0 0 chr6 66581915 66581945 -122697609 + (CA)n Simple_repeat Simple_repeat 2 31 0 717 257 44 5 chr6 66582563 66582769 -122696785 - MER20 DNA MER1_type -5 214 1 567 264 71 5 chr6 66582816 66583013 -122696541 - Charlie7 DNA MER1_type -2181 431 222 5190 165 33 6 chr6 66583120 66584139 -122695415 + L1MA8 LINE L1 5058 6113 -178 1322 235 52 3 chr6 66584139 66584467 -122695087 - MER2 DNA MER2_type 0 344 1 5190 165 33 6 chr6 66584467 66584651 -122694903 + L1MA8 LINE L1 6113 6291 0 238 374 138 9 chr6 66585001 66585335 -122694219 - L2 LINE L2 -1812 1502 1126 * 1217 281 102 23 chr6 66585334 66585862 -122693692 - L2 LINE L2 0 3313 2733 598 300 86 0 chr6 66586058 66586278 -122693276 - MIR SINE MIR 0 262 21 870 134 0 25 chr6 66586285 66586442 -122693112 - L1MA9 LINE L1 -1 6311 6159 257 180 0 16 chr6 66586442 66586503 -122693051 + CT-rich Low_complexity Low_complexity 2 61 0 22 0 0 0 chr6 66586741 66586763 -122692791 + AT_rich Low_complexity Low_complexity 1 22 0 419 230 40 88 chr6 66586913 66587061 -122692493 - MIR3 SINE MIR -62 146 6 191 111 0 28 chr6 66588394 66588430 -122691124 + (TTTC)n Simple_repeat Simple_repeat 1 35 0 279 0 0 0 chr6 66589435 66589535 -122690019 + (TG)n Simple_repeat Simple_repeat 1 100 0 1672 169 13 13 chr6 66589478 66589504 -122690050 - AluJo SINE Alu -6 306 281 279 0 0 0 chr6 66589504 66589535 -122690019 + (TG)n Simple_repeat Simple_repeat 1 31 0 1672 169 13 13 chr6 66589535 66589809 -122689745 - AluJo SINE Alu -30 282 6 607 196 23 11 chr6 66589848 66590170 -122689384 + CT-rich Low_complexity Low_complexity 1 325 0 793 193 15 0 chr6 66590188 66590455 -122689099 + CT-rich Low_complexity Low_complexity 1 271 0 470 323 82 8 chr6 66590738 66591128 -122688426 - L1ME LINE L1 -413 5753 5325 364 385 36 9 chr6 66591128 66591460 -122688094 - L1ME LINE L1 -1398 4748 4408 1398 163 4 12 chr6 66591473 66591724 -122687830 - AluJb SINE Alu 0 312 64 29 0 0 0 chr6 66591729 66591758 -122687796 + AT_rich Low_complexity Low_complexity 1 29 0 303 286 109 24 chr6 66591878 66592126 -122687428 + L1M4 LINE L1 4007 4275 -1871 458 311 17 28 chr6 66592135 66592315 -122687239 + Charlie8 DNA MER1_type 88 265 -2152 206 323 16 0 chr6 66592379 66592441 -122687113 + MER91 DNA MER1_type 78 140 0 368 192 0 14 chr6 66592906 66592979 -122686575 - MIR SINE MIR -6 256 185 38 75 0 0 chr6 66593143 66593223 -122686331 + AT_rich Low_complexity Low_complexity 1 80 0 554 262 99 36 chr6 66593799 66594020 -122685534 - MLT1J LTR MaLR -274 237 3 1568 178 16 35 chr6 66594815 66595129 -122684425 + AluJo SINE Alu 1 308 -4 1850 317 111 29 chr6 66596486 66596718 -122682836 + L2 LINE L2 1395 1607 -1707 2624 115 0 6 chr6 66596718 66597084 -122682470 + THE1B LTR MaLR 1 364 0 1850 317 111 29 chr6 66597084 66597953 -122681601 + L2 LINE L2 1607 2586 -728 385 262 86 48 chr6 66597993 66598203 -122681351 - L2 LINE L2 -460 2854 2637 1662 135 4 26 chr6 66601449 66601715 -122677839 + AluSx SINE Alu 1 260 -52 185 83 28 0 chr6 66601740 66601776 -122677778 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2063 146 0 0 chr6 66603101 66603403 -122676151 + AluSx SINE Alu 1 302 -10 700 291 132 48 chr6 66603558 66603974 -122675580 - MLT1H LTR MaLR 0 549 99 320 248 45 90 chr6 66604866 66605132 -122674422 + MER112 DNA MER1_type 7 260 0 21 0 0 0 chr6 66605639 66605660 -122673894 + AT_rich Low_complexity Low_complexity 1 21 0 29 78 0 0 chr6 66605694 66605758 -122673796 + AT_rich Low_complexity Low_complexity 1 64 0 28257 117 8 49 chr6 66606589 66613095 -122666459 + L1PA7 LINE L1 12 6154 0 361 315 81 7 chr6 66613904 66614053 -122665501 - MIR SINE MIR -1 261 102 389 331 29 0 chr6 66615552 66615691 -122663863 + MIR SINE MIR 116 258 -4 24 32 0 0 chr6 66616001 66616032 -122663522 + AT_rich Low_complexity Low_complexity 1 31 0 29 47 0 0 chr6 66616428 66616471 -122663083 + AT_rich Low_complexity Low_complexity 1 43 0 2165 114 0 3 chr6 66616679 66616986 -122662568 - AluSx SINE Alu -6 306 1 21 36 0 0 chr6 66617700 66617728 -122661826 + AT_rich Low_complexity Low_complexity 1 28 0 2216 89 10 13 chr6 66617872 66618176 -122661378 + AluSc SINE Alu 1 303 -6 308 230 0 23 chr6 66618453 66618540 -122661014 + HsTC2 DNA Tc2 2 86 -1812 630 271 78 67 chr6 66618594 66618955 -122660599 - MLT1J LTR MaLR 0 511 147 299 210 16 0 chr6 66619738 66619800 -122659754 + MLT1J LTR MaLR 429 491 -20 21 0 0 0 chr6 66619828 66619849 -122659705 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 66620364 66620387 -122659167 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr6 66620996 66621025 -122658529 + AT_rich Low_complexity Low_complexity 1 29 0 203 322 27 62 chr6 66621312 66621458 -122658096 + MIR SINE MIR 78 218 -44 189 0 0 0 chr6 66621495 66621516 -122658038 + (TG)n Simple_repeat Simple_repeat 1 21 0 2169 86 0 36 chr6 66621794 66622098 -122657456 - AluSg SINE Alu -15 295 3 31 26 0 0 chr6 66622551 66622589 -122656965 + AT_rich Low_complexity Low_complexity 1 38 0 382 358 74 6 chr6 66624794 66624956 -122654598 - MIR3 SINE MIR -19 189 17 27 29 0 0 chr6 66625296 66625330 -122654224 + AT_rich Low_complexity Low_complexity 1 34 0 367 225 93 62 chr6 66625645 66625774 -122653780 + L2 LINE L2 3140 3272 0 260 359 38 0 chr6 66626389 66626495 -122653059 - L2 LINE L2 -4 3309 3200 1290 204 101 26 chr6 66627861 66628209 -122651345 - MLT1A2 LTR MaLR 0 374 1 26 30 0 0 chr6 66628560 66628593 -122650961 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr6 66628767 66628789 -122650765 + AT_rich Low_complexity Low_complexity 1 22 0 41 66 0 0 chr6 66629400 66629476 -122650078 + AT_rich Low_complexity Low_complexity 1 76 0 228 345 54 47 chr6 66629832 66630182 -122649372 + L2 LINE L2 2741 3084 -188 21 0 0 0 chr6 66631841 66631862 -122647692 + AT_rich Low_complexity Low_complexity 1 21 0 253 323 30 30 chr6 66632024 66632125 -122647429 + MIR SINE MIR 20 121 -87 219 286 32 0 chr6 66632358 66632421 -122647133 - L2 LINE L2 -3 3269 3205 288 0 0 0 chr6 66635147 66635179 -122644375 + (TG)n Simple_repeat Simple_repeat 2 33 0 351 113 0 0 chr6 66635274 66635327 -122644227 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 7465 33 6 1 chr6 66635836 66637525 -122642029 - L1PA3 LINE L1 -3 6152 4458 324 0 0 0 chr6 66637866 66637902 -122641652 + (TG)n Simple_repeat Simple_repeat 2 37 0 351 136 0 0 chr6 66637991 66638050 -122641504 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 272 224 0 0 chr6 66638122 66638171 -122641383 - L1ME LINE L1 -583 5538 5490 1704 158 42 7 chr6 66638408 66638692 -122640862 + AluSx SINE Alu 1 294 -18 23 0 0 0 chr6 66638874 66638897 -122640657 + AT_rich Low_complexity Low_complexity 1 23 0 2800 274 123 48 chr6 66638928 66640619 -122638935 + L2 LINE L2 1526 3313 0 491 297 6 0 chr6 66642454 66642629 -122636925 - MER104 DNA MER2_type -4 176 1 328 337 17 59 chr6 66642944 66643416 -122636138 + Tigger1 DNA MER2_type 2 453 -1965 198 0 0 0 chr6 66644112 66644134 -122635420 + (T)n Simple_repeat Simple_repeat 1 22 0 10759 145 8 6 chr6 66644134 66644531 -122635023 + Tigger1 DNA MER2_type 55 450 -1968 1914 128 163 19 chr6 66644531 66644905 -122634649 - MSTA LTR MaLR 0 428 1 10759 145 8 6 chr6 66644905 66646227 -122633327 + Tigger1 DNA MER2_type 450 1777 -641 181 300 184 28 chr6 66646519 66646839 -122632715 - L2 LINE L2 -558 2756 2387 344 374 92 44 chr6 66647077 66647620 -122631934 - L2 LINE L2 -1691 1623 1055 25 31 0 0 chr6 66647748 66647780 -122631774 + AT_rich Low_complexity Low_complexity 1 32 0 278 67 22 0 chr6 66648028 66648073 -122631481 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 512 352 62 30 chr6 66648564 66648933 -122630621 - MLT1J2 LTR MaLR 0 450 70 595 237 17 0 chr6 66649149 66649267 -122630287 + FLAM_A SINE Alu 1 120 -13 188 208 125 83 chr6 66649365 66649461 -122630093 - MIR SINE MIR -77 185 86 258 32 0 0 chr6 66649515 66649546 -122630008 + (TG)n Simple_repeat Simple_repeat 1 31 0 266 106 21 0 chr6 66649844 66649891 -122629663 + (GA)n Simple_repeat Simple_repeat 1 48 0 309 357 45 48 chr6 66649976 66650245 -122629309 - L2 LINE L2 -191 3081 2814 194 351 0 40 chr6 66650668 66650742 -122628812 - L2 LINE L2 -81 3191 3121 1550 201 67 9 chr6 66651008 66651351 -122628203 - MLT1A1 LTR MaLR 0 365 3 245 172 30 20 chr6 66651470 66651569 -122627985 + (TTATA)n Simple_repeat Simple_repeat 5 104 0 61 58 0 0 chr6 66651576 66651679 -122627875 + AT_rich Low_complexity Low_complexity 1 103 0 27 29 0 0 chr6 66652730 66652764 -122626790 + AT_rich Low_complexity Low_complexity 1 34 0 386 323 6 12 chr6 66653220 66653384 -122626170 - L2 LINE L2 -1232 2082 1920 35 63 0 0 chr6 66653689 66653752 -122625802 + AT_rich Low_complexity Low_complexity 1 63 0 326 287 23 0 chr6 66653770 66653857 -122625697 - L2 LINE L2 0 3272 3184 261 0 0 0 chr6 66654377 66654406 -122625148 + (TG)n Simple_repeat Simple_repeat 2 30 0 501 284 131 0 chr6 66654476 66654652 -122624902 + MIR SINE MIR 5 203 -59 43 20 0 0 chr6 66654805 66654855 -122624699 + AT_rich Low_complexity Low_complexity 1 50 0 2426 97 0 0 chr6 66655248 66655558 -122623996 - AluSq SINE Alu -3 310 1 347 157 14 0 chr6 66655979 66656049 -122623505 + (TA)n Simple_repeat Simple_repeat 2 72 0 250 289 66 0 chr6 66656756 66656855 -122622699 + MIR SINE MIR 56 159 -49 563 261 121 13 chr6 66656863 66657020 -122622534 - MER58A DNA MER1_type -49 175 2 189 256 0 0 chr6 66657030 66657069 -122622485 + MIR3 SINE MIR 159 197 -11 198 260 70 90 chr6 66657804 66657904 -122621650 + L2 LINE L2 2324 2421 -893 439 282 34 0 chr6 66658898 66659015 -122620539 - L2 LINE L2 0 3313 3193 414 313 135 37 chr6 66659009 66659367 -122620187 + L2 LINE L2 2576 2977 -336 * 1930 141 0 0 chr6 66660485 66660798 -122618756 + AluSx SINE Alu 1 313 0 219 276 214 14 chr6 66662530 66662675 -122616879 + MIR SINE MIR 41 214 -48 27 29 0 0 chr6 66662789 66662823 -122616731 + AT_rich Low_complexity Low_complexity 1 34 0 3245 72 7 0 chr6 66663037 66663465 -122616089 - L1PA7 LINE L1 -1 6153 5723 223 123 12 49 chr6 66664186 66664267 -122615287 + (TA)n Simple_repeat Simple_repeat 2 79 0 207 100 0 0 chr6 66664303 66664333 -122615221 + (TA)n Simple_repeat Simple_repeat 2 31 0 231 196 18 18 chr6 66664355 66664411 -122615143 + (TA)n Simple_repeat Simple_repeat 2 57 0 26 50 0 0 chr6 66664882 66664922 -122614632 + AT_rich Low_complexity Low_complexity 1 40 0 357 407 0 0 chr6 66665535 66665670 -122613884 + L2 LINE L2 3138 3272 0 29 0 0 0 chr6 66665710 66665739 -122613815 + AT_rich Low_complexity Low_complexity 1 29 0 230 162 0 0 chr6 66665791 66665828 -122613726 - LTR40a LTR ERVL 0 519 483 1648 245 66 56 chr6 66665961 66666570 -122612984 + LTR68 LTR ERV1 126 740 0 21 0 0 0 chr6 66666621 66666642 -122612912 + AT_rich Low_complexity Low_complexity 1 21 0 4707 61 3 0 chr6 66667019 66667613 -122611941 + L1PA7 LINE L1 5552 6147 -7 308 319 56 19 chr6 66667829 66667989 -122611565 + L1ME3 LINE L1 1554 1719 -4677 1836 244 78 31 chr6 66668014 66669132 -122610422 + L1ME3 LINE L1 2627 3966 -2249 2090 118 3 16 chr6 66669132 66669447 -122610107 - AluSx SINE Alu -1 311 1 1836 244 78 31 chr6 66669447 66669492 -122610062 + L1ME3 LINE L1 3966 4007 -2208 1246 241 76 63 chr6 66669493 66669874 -122609680 - MLT1E3 LTR MaLR -4 620 204 942 247 69 38 chr6 66669964 66670586 -122608968 + L1ME3 LINE L1 4993 5637 -596 892 250 115 44 chr6 66670595 66670979 -122608575 + L1ME3 LINE L1 5814 6224 -7 374 387 62 41 chr6 66672338 66672757 -122606797 + L2 LINE L2 2827 3254 -18 442 269 37 0 chr6 66674566 66674700 -122604854 - LTR16C LTR ERVL -7 484 346 453 332 80 0 chr6 66674771 66674958 -122604596 - LTR16C LTR ERVL -285 206 5 857 311 105 12 chr6 66675731 66676149 -122603405 - LTR33A LTR ERVL -2 521 65 1374 203 142 72 chr6 66676508 66677080 -122602474 - LTR9 LTR ERV1 0 612 1 1831 158 35 14 chr6 66677910 66678276 -122601278 + THE1C LTR MaLR 2 375 0 288 319 55 0 chr6 66678397 66678488 -122601066 - MER91A DNA MER1_type -98 98 3 309 318 64 36 chr6 66678541 66678651 -122600903 - L2 LINE L2 -4 3268 3156 686 201 78 7 chr6 66679124 66679278 -122600276 + L1MA10 LINE L1 6167 6331 -3 21 0 0 0 chr6 66679599 66679620 -122599934 + AT_rich Low_complexity Low_complexity 1 21 0 327 208 24 39 chr6 66679721 66679856 -122599698 - L1ME LINE L1 -381 5789 5655 476 286 44 22 chr6 66679864 66680046 -122599508 + MER5A DNA MER1_type 3 188 -1 206 182 23 0 chr6 66680056 66680100 -122599454 + (TA)n Simple_repeat Simple_repeat 1 45 0 294 340 21 0 chr6 66680154 66680295 -122599259 - L1ME LINE L1 -601 5565 5422 1032 146 0 0 chr6 66680498 66680663 -122598891 - L1MA4A LINE L1 -5 6298 6134 2244 76 3 13 chr6 66680839 66681140 -122598414 + AluY SINE Alu 1 298 -13 311 192 13 0 chr6 66681469 66681547 -122598007 + (TA)n Simple_repeat Simple_repeat 2 80 0 322 262 53 47 chr6 66681617 66681957 -122597597 - L1M4 LINE L1 -2791 3355 3014 183 245 38 0 chr6 66683025 66683078 -122596476 + MIR SINE MIR 78 132 -130 194 361 0 0 chr6 66683105 66683166 -122596388 - L2 LINE L2 -13 3259 3199 333 301 141 47 chr6 66683934 66684428 -122595126 - L2 LINE L2 -19 3294 2746 514 312 247 22 chr6 66684432 66684893 -122594661 - L2 LINE L2 -422 2892 2328 2887 53 3 5 chr6 66685373 66685748 -122593806 - L1PA5 LINE L1 0 6154 5781 23 0 0 0 chr6 66685953 66685976 -122593578 + AT_rich Low_complexity Low_complexity 1 23 0 40 87 0 0 chr6 66687108 66687211 -122592343 + AT_rich Low_complexity Low_complexity 1 103 0 270 106 0 0 chr6 66687220 66687267 -122592287 + (CATA)n Simple_repeat Simple_repeat 2 48 0 271 285 14 95 chr6 66687407 66687628 -122591926 - MLT1K LTR MaLR -13 575 373 778 211 43 27 chr6 66687743 66687928 -122591626 + MER5A DNA MER1_type 2 189 0 280 308 19 37 chr6 66688351 66688458 -122591096 - MIR SINE MIR -97 165 61 187 253 0 80 chr6 66689650 66689725 -122589829 - L2 LINE L2 -2721 593 525 18993 39 0 1 chr6 66693654 66696769 -122582785 - L1PA3 LINE L1 -3 6152 3039 255 182 36 0 chr6 66697178 66697233 -122582321 + LTR67 LTR ERVL 457 513 -44 864 179 25 20 chr6 66697235 66697436 -122582118 - L1 LINE L1 -3104 2866 2665 1607 275 55 24 chr6 66697449 66698104 -122581450 - L1 LINE L1 -3490 2480 1757 366 23 0 0 chr6 66698104 66698147 -122581407 + (TG)n Simple_repeat Simple_repeat 2 44 0 1607 275 55 24 chr6 66698147 66698692 -122580862 - L1 LINE L1 -4213 1757 1230 1755 300 41 49 chr6 66698693 66699930 -122579624 - L1 LINE L1 -4895 996 2 497 289 102 6 chr6 66700089 66700404 -122579150 - L1M4 LINE L1 -3000 3146 2802 555 373 62 8 chr6 66700552 66700909 -122578645 + L2 LINE L2 1498 1873 -1441 832 351 34 29 chr6 66702173 66702391 -122577163 + L1MEc LINE L1 32 247 -6149 414 0 0 0 chr6 66702391 66702437 -122577117 + (TG)n Simple_repeat Simple_repeat 2 47 0 832 351 34 29 chr6 66702437 66702834 -122576720 + L1MEc LINE L1 247 650 -5746 5622 113 5 9 chr6 66702859 66703716 -122575838 - L1PA13 LINE L1 -4 6159 5307 1213 283 45 18 chr6 66703717 66704438 -122575116 + L1MEc LINE L1 673 1281 -4832 585 287 48 48 chr6 66704448 66704716 -122574838 - MLT1H LTR MaLR -142 407 140 204 217 0 0 chr6 66704736 66704782 -122574772 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 248 173 0 0 chr6 66704782 66704834 -122574720 - L1MC4 LINE L1 -1339 6703 6652 2718 91 3 10 chr6 66705209 66705594 -122573960 - L1PA13 LINE L1 -1 6162 5781 478 274 64 99 chr6 66705688 66705929 -122573625 + L1MEc LINE L1 865 1113 -5092 306 0 0 0 chr6 66705929 66705963 -122573591 + (TA)n Simple_repeat Simple_repeat 2 35 0 2240 106 7 0 chr6 66705963 66706266 -122573288 - AluSg SINE Alu -5 305 1 478 274 64 99 chr6 66706266 66706428 -122573126 + L1MEc LINE L1 1111 1255 -4950 372 263 22 104 chr6 66706435 66706752 -122572802 + L1MEc LINE L1 1519 1755 -861 367 309 122 16 chr6 66706983 66707229 -122572325 + L1MEc LINE L1 2023 2294 -4102 192 107 0 0 chr6 66707244 66707272 -122572282 - L2 LINE L2 -19 3294 3267 27 29 0 0 chr6 66708224 66708258 -122571296 + AT_rich Low_complexity Low_complexity 1 34 0 491 333 58 24 chr6 66708349 66708643 -122570911 + L2 LINE L2 3009 3312 -1 1244 223 42 3 chr6 66709414 66709701 -122569853 + L1MEc LINE L1 3463 3764 -2451 288 0 0 0 chr6 66709701 66709733 -122569821 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1244 223 42 3 chr6 66709733 66709755 -122569799 + L1MEc LINE L1 3764 3784 -2431 * 6126 154 26 54 chr6 66709754 66712081 -122567473 + L1MA9 LINE L1 4116 6380 -1 193 152 196 0 chr6 66713017 66713063 -122566491 + L2 LINE L2 3205 3259 -54 369 102 0 0 chr6 66713078 66713137 -122566417 + (TGAA)n Simple_repeat Simple_repeat 3 61 0 286 319 35 9 chr6 66714006 66714122 -122565432 + L3 LINE CR1 1453 1571 -6 26 0 0 0 chr6 66714202 66714228 -122565326 + AT_rich Low_complexity Low_complexity 1 26 0 231 288 0 0 chr6 66714408 66714481 -122565073 + T-rich Low_complexity Low_complexity 1 73 0 637 230 168 0 chr6 66715096 66715257 -122564297 - MER5A DNA MER1_type 0 189 2 456 326 111 51 chr6 66716228 66716642 -122562912 - MLT1K LTR MaLR -17 571 133 522 261 168 56 chr6 66717210 66717779 -122561775 + L2 LINE L2 2672 3313 0 388 109 0 0 chr6 66718182 66718237 -122561317 - MLT2A2 LTR ERVL 0 453 399 324 258 22 11 chr6 66718261 66718350 -122561204 - L1MC4 LINE L1 -1339 6703 6614 2880 78 21 8 chr6 66718370 66718757 -122560797 - MLT2A1 LTR ERVL -52 392 1 409 245 71 10 chr6 66719555 66719653 -122559901 + L2 LINE L2 3204 3307 -6 281 220 0 0 chr6 66720074 66720124 -122559430 + LTR67 LTR ERVL 507 556 -1 1552 205 30 0 chr6 66720178 66720475 -122559079 - MLT1A1 LTR MaLR -2 363 58 236 254 28 0 chr6 66720501 66720572 -122558982 - MLT1A1 LTR MaLR -301 73 1 21 0 0 0 chr6 66721317 66721338 -122558216 + AT_rich Low_complexity Low_complexity 1 21 0 603 237 74 37 chr6 66721690 66721960 -122557594 - HAL1 LINE L1 -955 1552 1273 271 264 55 55 chr6 66722045 66722246 -122557308 - HAL1 LINE L1 -1384 1123 923 19251 162 30 25 chr6 66722250 66726378 -122553176 - L1MA1 LINE L1 0 7721 3619 2099 118 6 13 chr6 66726378 66726693 -122552861 - AluSp SINE Alu 0 313 1 19251 162 30 25 chr6 66726693 66729160 -122550394 - L1MA1 LINE L1 -4102 3619 1068 3723 155 39 74 chr6 66729160 66729973 -122549581 - LTR1 LTR ERV1 0 785 1 19251 162 30 25 chr6 66729973 66731043 -122548511 - L1MA1 LINE L1 -6653 1068 6 505 279 12 18 chr6 66731048 66731213 -122548341 - HAL1 LINE L1 -1610 897 734 263 326 104 14 chr6 66731222 66731366 -122548188 + MIR SINE MIR 74 230 -32 837 179 0 7 chr6 66731378 66731529 -122548025 - LTR32 LTR ERVL -5 466 317 232 167 71 0 chr6 66731529 66731571 -122547983 - LTR32 LTR ERVL -103 368 324 1914 179 24 18 chr6 66731660 66731990 -122547564 - LTR32 LTR ERVL -119 352 21 600 311 55 25 chr6 66732116 66732351 -122547203 + MIR SINE MIR 8 249 -13 883 245 57 5 chr6 66732554 66732766 -122546788 - MER58A DNA MER1_type -1 223 1 217 283 132 13 chr6 66734348 66734477 -122545077 - MIR SINE MIR -13 249 104 192 77 0 0 chr6 66735083 66735109 -122544445 + (CAA)n Simple_repeat Simple_repeat 1 26 0 224 392 21 0 chr6 66735496 66735593 -122543961 + MIR SINE MIR 53 151 -111 251 372 103 0 chr6 66735596 66735741 -122543813 - L2 LINE L2 0 3313 3154 1149 294 173 12 chr6 66736015 66736444 -122543110 + MLT1E LTR MaLR 19 516 -77 4513 190 21 45 chr6 66736490 66737838 -122541716 - L1MB3 LINE L1 -8 6175 4848 * 5734 166 48 9 chr6 66737834 66737896 -122541658 + L1M4c LINE L1 1196 1254 -5130 258 32 0 0 chr6 66737896 66737927 -122541627 + (TA)n Simple_repeat Simple_repeat 2 32 0 5734 166 48 9 chr6 66737927 66738993 -122540561 + L1M4c LINE L1 1254 2368 -4016 355 325 73 15 chr6 66739070 66739276 -122540278 + LTR16C LTR ERVL 243 460 -31 192 375 106 19 chr6 66739330 66739586 -122539968 - L2 LINE L2 -662 2652 2375 432 349 57 29 chr6 66739724 66740039 -122539515 + LTR16C LTR ERVL 168 491 0 2112 94 44 96 chr6 66740165 66740383 -122539171 - THE1B LTR MaLR 0 364 173 2229 107 0 22 chr6 66740383 66740701 -122538853 + AluSq SINE Alu 2 312 -1 2112 94 44 96 chr6 66740701 66740866 -122538688 - THE1B LTR MaLR -191 173 1 240 370 30 12 chr6 66740892 66741057 -122538497 - L2 LINE L2 -1896 1418 1251 24 0 0 0 chr6 66741073 66741097 -122538457 + AT_rich Low_complexity Low_complexity 1 24 0 311 295 58 45 chr6 66742931 66743087 -122536467 + MIR SINE MIR 84 241 -21 23844 59 2 1 chr6 66743276 66746359 -122533195 - L1PA5 LINE L1 -1912 4234 1150 9269 42 4 1 chr6 66746340 66748201 -122531353 + L1PA5 LINE L1 4237 6099 -55 * 230 233 0 17 chr6 66748201 66748261 -122531293 + LTR37B LTR ERV1 5 63 -405 999 174 22 5 chr6 66751597 66751781 -122527773 - MER5A DNA MER1_type -2 187 1 315 289 145 24 chr6 66751931 66752180 -122527374 + L2 LINE L2 3035 3313 0 720 64 0 0 chr6 66753708 66753735 -122525819 + (TTCC)n Simple_repeat Simple_repeat 1 121 0 720 64 0 0 chr6 66753735 66753829 -122525725 + (TTCC)n Simple_repeat Simple_repeat 2 95 0 441 290 161 44 chr6 66753956 66754204 -122525350 - L2 LINE L2 -27 3286 3010 699 336 30 11 chr6 66754240 66754564 -122524990 - L2 LINE L2 -440 2873 2474 738 377 85 26 chr6 66754662 66755288 -122524266 - L2 LINE L2 -2285 1029 367 599 146 0 0 chr6 66755309 66755419 -122524135 + L1PA13 LINE L1 4784 4893 -1253 * 4791 116 21 16 chr6 66755415 66755557 -122523997 + L1PA13 LINE L1 5390 5530 -633 2716 88 3 0 chr6 66755557 66755911 -122523643 + THE1A LTR MaLR 1 355 0 4791 116 21 16 chr6 66755911 66756535 -122523019 + L1PA13 LINE L1 5530 6160 -3 180 368 42 21 chr6 66756604 66756699 -122522855 - L2 LINE L2 -2977 337 241 754 298 36 30 chr6 66756943 66757279 -122522275 + MER93a LTR ERV1 63 400 -2 182 36 0 36 chr6 66758553 66758581 -122520973 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 351 0 0 0 chr6 66758925 66758964 -122520590 + (TG)n Simple_repeat Simple_repeat 2 40 0 200 292 79 22 chr6 66760751 66760840 -122518714 - MIR SINE MIR -26 236 143 404 274 30 10 chr6 66760843 66760944 -122518610 + MLT1E1 LTR MaLR 2 100 -493 2311 112 0 3 chr6 66760944 66761256 -122518298 - AluSx SINE Alu -1 311 1 3351 119 25 33 chr6 66761277 66761890 -122517664 + MER4B LTR ERV1 1 779 0 1016 211 98 4 chr6 66761900 66762156 -122517398 + MLT1E1 LTR MaLR 137 416 -238 499 135 0 106 chr6 66762158 66762262 -122517292 + THE1C LTR MaLR 1 93 -282 683 258 15 2 chr6 66762890 66763065 -122516489 - MER5A DNA MER1_type 0 189 1 2610 145 36 2 chr6 66763224 66763672 -122515882 + L1PB3 LINE L1 5682 6144 -10 445 286 214 10 chr6 66763700 66763889 -122515665 - MIR SINE MIR -26 236 4 1082 203 114 75 chr6 66763889 66764248 -122515306 + MLT1A2 LTR MaLR 1 373 -1 1350 244 146 25 chr6 66765033 66765594 -122513960 - L1ME3 LINE L1 -212 5950 5322 218 269 0 115 chr6 66765709 66765787 -122513767 - MER5A DNA MER1_type -6 183 115 * 232 323 188 0 chr6 66765751 66765847 -122513707 + MER5A DNA MER1_type 50 163 -26 341 253 24 12 chr6 66766108 66766191 -122513363 - L2 LINE L2 -38 3275 3192 296 296 34 45 chr6 66766613 66766880 -122512674 - L1M4 LINE L1 -3705 2441 2178 201 159 45 23 chr6 66766927 66766971 -122512583 + CT-rich Low_complexity Low_complexity 1 45 0 1310 260 97 20 chr6 66767046 66767572 -122511982 + MLT1F1 LTR MaLR 1 564 -3 21 0 0 0 chr6 66767859 66767880 -122511674 + AT_rich Low_complexity Low_complexity 1 21 0 3781 65 29 13 chr6 66768093 66768615 -122510939 - L1PA7 LINE L1 0 6154 5625 3902 134 50 54 chr6 66768642 66769420 -122510134 - LTR1 LTR ERV1 0 785 11 23 0 0 0 chr6 66769694 66769717 -122509837 + AT_rich Low_complexity Low_complexity 1 23 0 264 275 22 43 chr6 66769931 66770069 -122509485 - HAL1 LINE L1 -1450 1057 923 896 204 66 0 chr6 66770295 66770462 -122509092 + MER5A DNA MER1_type 12 189 0 1404 246 52 48 chr6 66770694 66771154 -122508400 + MLT1C LTR MaLR 6 467 0 26 0 0 0 chr6 66771616 66771642 -122507912 + AT_rich Low_complexity Low_complexity 1 26 0 264 169 15 62 chr6 66771952 66772017 -122507537 - L1ME LINE L1 -289 5832 5771 602 95 0 0 chr6 66772878 66772962 -122506592 - AluSp/q SINE Alu -10 303 220 313 323 75 32 chr6 66773719 66773905 -122505649 + L2 LINE L2 1863 2056 -1258 334 358 36 66 chr6 66774033 66774307 -122505247 + L2 LINE L2 2573 2838 -476 249 340 175 10 chr6 66774500 66774597 -122504957 + L2 LINE L2 3122 3234 -38 2159 169 77 2 chr6 66774625 66775069 -122504485 - L1MA3 LINE L1 0 7724 7248 11072 186 44 15 chr6 66775069 66777581 -122501973 - L1MA3 LINE L1 -1186 6379 3795 * 15793 153 22 14 chr6 66777566 66779592 -122499962 - L1MA3 LINE L1 -4643 2922 870 958 25 17 0 chr6 66779592 66779710 -122499844 - L1PA4 LINE L1 -3 6152 6033 15793 153 22 14 chr6 66779710 66780318 -122499236 - L1MA3 LINE L1 -6695 870 268 1991 90 22 71 chr6 66781477 66781800 -122497754 - AluSc SINE Alu -2 307 1 1133 264 78 26 chr6 66781810 66782234 -122497320 - L1MD2 LINE L1 -10 6349 5904 2410 176 26 105 chr6 66782239 66782774 -122496780 - LTR42 LTR ERVL -2 493 1 1043 220 16 4 chr6 66782779 66783029 -122496525 - L1MD2 LINE L1 -460 5899 5647 520 208 48 0 chr6 66783043 66783168 -122496386 + L1MC/D LINE L1 5660 5790 -554 435 356 54 0 chr6 66783211 66783433 -122496121 + L1M3a LINE L1 550 783 -5172 2713 255 71 45 chr6 66783433 66784903 -122494651 + L1MA9 LINE L1 323 1547 -4487 5125 83 4 0 chr6 66784903 66785585 -122493969 + L1PA6 LINE L1 5469 6154 0 2713 255 71 45 chr6 66785585 66787004 -122492550 + L1MA9 LINE L1 1547 2928 -3106 * 7791 193 34 39 chr6 66786994 66787007 -122492547 + L1MA9 LINE L1 3329 3341 -2693 1654 179 3 26 chr6 66787007 66787319 -122492235 + AluJb SINE Alu 1 305 -7 7791 193 34 39 chr6 66787319 66787502 -122492052 + L1MA9 LINE L1 3341 3523 -2511 16963 38 3 0 chr6 66787502 66790318 -122489236 - L1PA4 LINE L1 -3 6152 3318 7791 193 34 39 chr6 66790318 66792070 -122487484 + L1MA9 LINE L1 3523 5269 -765 7805 132 27 92 chr6 66792070 66793680 -122485874 - Tigger1 DNA MER2_type 0 2418 914 6125 17 1 0 chr6 66793697 66794403 -122485151 - L1PA3 LINE L1 0 6155 5449 9035 28 4 1 chr6 66794403 66795547 -122484007 + L1PA3 LINE L1 4298 5444 -711 4924 156 28 14 chr6 66795548 66796408 -122483146 - Tigger1 DNA MER2_type -1545 873 2 2171 219 57 16 chr6 66796409 66796984 -122482570 + L1MA9 LINE L1 5268 5866 -334 1842 175 58 8 chr6 66796987 66797381 -122482173 + L1MA9 LINE L1 5898 6311 -1 870 186 91 74 chr6 66797406 66797745 -122481809 + L1MC3 LINE L1 5812 6156 -1629 416 250 38 44 chr6 66797768 66797928 -122481626 - L1MDa LINE L1 -6354 186 28 27 0 0 0 chr6 66797947 66797974 -122481580 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr6 66798838 66798877 -122480677 + AT_rich Low_complexity Low_complexity 1 39 0 364 374 71 41 chr6 66798902 66799196 -122480358 + HAL1 LINE L1 52 354 -2153 234 276 9 48 chr6 66799279 66799384 -122480170 + HAL1 LINE L1 1682 1782 -725 1914 129 11 4 chr6 66799831 66800134 -122479420 - AluSx SINE Alu 0 305 1 372 289 90 77 chr6 66800185 66800717 -122478837 - L1M4 LINE L1 -1471 4675 4137 784 300 88 26 chr6 66801145 66801522 -122478032 - L2 LINE L2 -3 3310 2911 203 98 235 0 chr6 66801574 66801625 -122477929 - L2 LINE L2 -496 2818 2756 329 325 37 32 chr6 66801626 66801814 -122477740 - MLT1J LTR MaLR 0 511 323 274 74 37 37 chr6 66801992 66802046 -122477508 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 2068 130 13 0 chr6 66802051 66802350 -122477204 - AluSx SINE Alu -1 311 9 283 222 26 26 chr6 66802826 66802979 -122476575 + (TA)n Simple_repeat Simple_repeat 2 154 0 22 56 0 0 chr6 66803238 66803274 -122476280 + AT_rich Low_complexity Low_complexity 1 36 0 3483 216 72 51 chr6 66803729 66804877 -122474677 + L1MC4 LINE L1 6865 8036 -6 24 67 0 0 chr6 66805326 66805371 -122474183 + AT_rich Low_complexity Low_complexity 1 45 0 1960 141 20 0 chr6 66806572 66806876 -122472678 + AluSq SINE Alu 1 310 -3 467 344 85 52 chr6 66807367 66807977 -122471577 + L2 LINE L2 2017 2646 -668 225 129 0 0 chr6 66807980 66808011 -122471543 - LTR33 LTR ERVL -7 514 484 638 303 179 17 chr6 66808040 66808393 -122471161 - LTR33 LTR ERVL -111 410 1 360 0 0 0 chr6 66808580 66808620 -122470934 + (CA)n Simple_repeat Simple_repeat 2 41 0 1243 341 80 3 chr6 66808772 66809411 -122470143 - L2 LINE L2 -184 3129 2447 281 282 0 14 chr6 66809549 66809620 -122469934 + L2 LINE L2 3203 3272 0 186 118 0 0 chr6 66809621 66809655 -122469899 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1871 143 14 7 chr6 66809658 66809944 -122469610 - AluSx SINE Alu -24 288 1 299 294 9 0 chr6 66810691 66810800 -122468754 + (TA)n Simple_repeat Simple_repeat 1 110 0 1597 188 13 16 chr6 66811202 66811510 -122468044 + AluJb SINE Alu 1 307 -5 480 224 95 104 chr6 66811562 66811803 -122467751 + LTR37B LTR ERV1 117 355 -113 341 224 40 13 chr6 66811831 66811907 -122467647 - MER58A DNA MER1_type -29 78 1 280 244 101 0 chr6 66812196 66812315 -122467239 + LTR37A LTR ERV1 296 426 0 809 236 86 119 chr6 66812428 66812906 -122466648 + MLT1C LTR MaLR 6 467 0 5218 148 56 7 chr6 66813132 66814421 -122465133 + L1PA16 LINE L1 4809 6166 0 401 298 149 17 chr6 66814447 66814682 -122464872 - L1ME4a LINE L1 -281 5840 5575 26 64 0 0 chr6 66814792 66814839 -122464715 + AT_rich Low_complexity Low_complexity 1 47 0 1963 195 26 42 chr6 66814875 66815331 -122464223 - MLT1C LTR MaLR 0 467 19 25 31 0 0 chr6 66815496 66815528 -122464026 + AT_rich Low_complexity Low_complexity 1 32 0 7954 50 5 11 chr6 66815718 66816562 -122462992 - L1PA6 LINE L1 -1 6153 5305 2407 77 0 0 chr6 66816562 66816859 -122462695 - AluY SINE Alu -14 297 1 7954 50 5 11 chr6 66816859 66817834 -122461720 - L1PA6 LINE L1 -849 5305 4353 13647 65 8 2 chr6 66817834 66819656 -122459898 + L1PA6 LINE L1 2517 4350 -1796 378 382 7 0 chr6 66819885 66820029 -122459525 + MIR3 SINE MIR 58 202 -6 189 368 88 26 chr6 66820113 66820227 -122459327 + MIR SINE MIR 28 148 -60 1410 219 88 52 chr6 66821923 66822480 -122457074 - MER69 DNA AcHobo -3 2523 1947 1096 273 73 26 chr6 66822479 66822823 -122456731 - MER69 DNA AcHobo -838 388 29 * 242 325 98 0 chr6 66823801 66823924 -122455630 - L2 LINE L2 -219 3053 2919 194 326 239 0 chr6 66825565 66825703 -122453851 + MIR SINE MIR 80 250 -12 505 340 82 0 chr6 66826815 66827059 -122452495 + MLT1L LTR MaLR 352 615 0 275 300 115 0 chr6 66828290 66828420 -122451134 + MIR SINE MIR 117 261 -1 421 388 70 21 chr6 66829802 66830315 -122449239 + HERVL LTR ERVL 3443 3940 -1714 5551 123 12 1 chr6 66830677 66832079 -122447475 - L1PB1 LINE L1 -4 6147 4740 6612 231 30 18 chr6 66832079 66833408 -122446146 - L1 LINE L1 -2396 3750 2382 2057 140 3 0 chr6 66833408 66833715 -122445839 - AluSq SINE Alu -5 308 1 6612 231 30 18 chr6 66833715 66834684 -122444870 - L1 LINE L1 -3764 2382 1426 1129 189 0 5 chr6 66836027 66836228 -122443326 - AluSx SINE Alu -14 298 99 436 246 95 8 chr6 66836230 66836356 -122443198 + L2 LINE L2 2201 2337 -977 688 133 0 0 chr6 66836356 66836461 -122443093 - AluSx SINE Alu -207 105 1 229 255 0 0 chr6 66836501 66836548 -122443006 - MLT1K LTR MaLR -197 391 345 1742 327 96 41 chr6 66836569 66837522 -122442032 + L2 LINE L2 2020 3061 -252 2573 52 0 0 chr6 66837522 66837830 -122441724 - AluY SINE Alu -3 308 1 1742 327 96 41 chr6 66837830 66838085 -122441469 + L2 LINE L2 3061 3300 -13 249 33 0 0 chr6 66838087 66838117 -122441437 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 234 262 8 139 chr6 66838237 66838359 -122441195 - MLT1K LTR MaLR -416 172 67 360 159 29 0 chr6 66838680 66838749 -122440805 - L1PA14 LINE L1 -2420 3726 3656 5453 174 38 11 chr6 66838750 66839982 -122439572 + L1PA14 LINE L1 3729 4927 -1234 189 0 0 0 chr6 66839982 66840003 -122439551 + (CA)n Simple_repeat Simple_repeat 1 21 0 5453 174 38 11 chr6 66840003 66840953 -122438601 + L1PA14 LINE L1 4927 6159 -2 5136 150 20 9 chr6 66840953 66842208 -122437346 + L1PA15 LINE L1 4909 6165 0 17735 100 21 23 chr6 66842369 66843139 -122436415 + L1PA8 LINE L1 2477 3247 -2925 2727 56 0 0 chr6 66843139 66843476 -122436078 + L1PA3 LINE L1 5814 6155 0 17735 100 21 23 chr6 66843476 66846397 -122433157 + L1PA8 LINE L1 3247 6152 -20 1411 193 111 0 chr6 66846754 66847060 -122432494 - MER58B DNA MER1_type -1 340 1 268 200 82 45 chr6 66847491 66847601 -122431953 + L1ME4a LINE L1 5990 6103 -18 23 0 0 0 chr6 66847615 66847638 -122431916 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 66848614 66848635 -122430919 + AT_rich Low_complexity Low_complexity 1 21 0 886 257 90 50 chr6 66849237 66849735 -122429819 + HAL1 LINE L1 647 1164 -1343 23 0 0 0 chr6 66850332 66850355 -122429199 + AT_rich Low_complexity Low_complexity 1 23 0 884 329 50 30 chr6 66850651 66851055 -122428499 + MLT1G1 LTR MaLR 3 414 -181 297 191 157 0 chr6 66851304 66851393 -122428161 + LTR47A LTR ERVL 261 363 -89 295 195 110 59 chr6 66851416 66851534 -122428020 + MLT1G1 LTR MaLR 366 489 -41 6377 125 35 1 chr6 66851534 66853209 -122426345 + L1PA13 LINE L1 4412 6145 -18 281 337 58 37 chr6 66853482 66853672 -122425882 - MIR SINE MIR -46 216 23 3802 33 0 4 chr6 66853876 66854352 -122425202 + L1PA3 LINE L1 5686 6159 0 272 253 13 0 chr6 66854377 66854452 -122425102 + L1ME LINE L1 5624 5699 -422 803 124 93 12 chr6 66854599 66854760 -122424794 + L1MB2 LINE L1 5996 6169 -2 2337 253 70 6 chr6 66855034 66855881 -122423673 - L1MCb LINE L1 -2758 3806 2906 757 203 0 0 chr6 66855888 66856021 -122423533 - FLAM_A SINE Alu -2 140 8 2201 237 114 48 chr6 66856031 66856304 -122423250 - L1MCb LINE L1 -3662 2902 2649 180 111 0 0 chr6 66856304 66856331 -122423223 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2201 237 114 48 chr6 66856331 66856751 -122422803 - L1MCb LINE L1 -3915 2649 2258 231 88 0 0 chr6 66856751 66856785 -122422769 + (TTA)n Simple_repeat Simple_repeat 1 34 0 2201 237 114 48 chr6 66856785 66857411 -122422143 - L1MCb LINE L1 -4306 2258 1496 * 3908 230 61 17 chr6 66857407 66858950 -122420604 - L1MCb LINE L1 -4849 1196 65 5300 132 26 83 chr6 66859156 66860019 -122419535 - L1PB1 LINE L1 0 6151 5424 3902 70 0 0 chr6 66860019 66860530 -122419024 - L1PA7 LINE L1 -2 6152 5642 5300 132 26 83 chr6 66860530 66861381 -122418173 - L1PB1 LINE L1 -727 5424 4526 2154 186 31 20 chr6 66861495 66862256 -122417298 + MER21A LTR ERV1 5 925 -6 1487 251 62 20 chr6 66863744 66864194 -122415360 - MER110 LTR ERV1 -22 469 1 288 335 101 13 chr6 66864220 66864378 -122415176 - MER5B DNA MER1_type 0 178 7 3510 178 42 31 chr6 66864551 66864711 -122414843 - LTR39 LTR ERV1 -2 781 624 2380 49 16 13 chr6 66864711 66865017 -122414537 - AluY SINE Alu -4 307 1 3510 178 42 31 chr6 66865017 66865574 -122413980 - LTR39 LTR ERV1 -159 624 56 192 286 116 54 chr6 66865790 66866014 -122413540 - MER5C DNA MER1_type -16 308 71 27 73 0 0 chr6 66866706 66866761 -122412793 + AT_rich Low_complexity Low_complexity 1 55 0 4501 110 20 1 chr6 66866861 66867509 -122412045 + PABL_A LTR ERV1 1 660 0 2924 240 88 23 chr6 66867628 66868509 -122411045 - L1ME2 LINE L1 -15 6218 5396 2669 23 0 7 chr6 66868509 66868810 -122410744 - AluYa5 SINE Alu -12 299 1 2924 240 88 23 chr6 66868810 66868915 -122410639 - L1ME2 LINE L1 -837 5396 5299 1574 201 16 3 chr6 66868915 66869218 -122410336 - AluJo SINE Alu -5 307 1 2924 240 88 23 chr6 66869218 66869601 -122409953 - L1ME2 LINE L1 -934 5299 4751 673 290 67 60 chr6 66869602 66870598 -122408956 - L1ME2 LINE L1 -5219 1002 51 194 260 39 67 chr6 66872133 66872228 -122407326 - MIR SINE MIR -11 251 158 1628 183 56 14 chr6 66872228 66872588 -122406966 + THE1C LTR MaLR 1 375 0 267 31 0 0 chr6 66873697 66873729 -122405825 + (GA)n Simple_repeat Simple_repeat 1 32 0 327 200 47 12 chr6 66873782 66873867 -122405687 + MLT1K LTR MaLR 487 574 -14 5527 169 24 26 chr6 66877386 66878545 -122401009 + L1MC1 LINE L1 5175 6333 0 279 301 48 39 chr6 66879026 66879232 -122400322 + HERVL LTR ERVL 978 1185 -4579 384 335 109 25 chr6 66879278 66879517 -122400037 + HERVL LTR ERVL 3205 3463 -2191 238 256 15 29 chr6 66879564 66879701 -122399853 + (TAA)n Simple_repeat Simple_repeat 2 136 0 * 253 231 0 43 chr6 66879614 66879731 -122399823 + A-rich Low_complexity Low_complexity 1 112 0 21 0 0 0 chr6 66880582 66880603 -122398951 + AT_rich Low_complexity Low_complexity 1 21 0 272 306 133 33 chr6 66880941 66881301 -122398253 + L1MC4a LINE L1 5510 5905 -1903 25 0 0 0 chr6 66881340 66881365 -122398189 + AT_rich Low_complexity Low_complexity 1 25 0 2157 98 3 16 chr6 66881616 66881931 -122397623 - AluY SINE Alu 0 311 1 358 298 70 70 chr6 66881933 66882050 -122397504 - MIR SINE MIR -46 216 97 2071 84 47 37 chr6 66882050 66882348 -122397206 + AluSg SINE Alu 1 301 -9 358 298 70 70 chr6 66882348 66882445 -122397109 - MIR SINE MIR -164 98 2 1862 145 10 24 chr6 66882603 66882893 -122396661 + AluJo SINE Alu 1 286 -26 457 298 81 43 chr6 66882944 66883179 -122396375 - L3 LINE CR1 -227 1350 1107 1568 250 70 31 chr6 66884115 66884599 -122394955 - MLT1D LTR MaLR 0 505 3 2672 194 26 7 chr6 66884698 66885238 -122394316 - MER44D DNA MER2_type 0 605 1 2126 113 3 0 chr6 66885265 66885548 -122394006 + AluSx SINE Alu 1 284 -28 22 0 0 0 chr6 66885548 66885570 -122393984 + AT_rich Low_complexity Low_complexity 1 22 0 2329 88 0 13 chr6 66885865 66886171 -122393383 + AluSg SINE Alu 1 302 -8 180 219 0 0 chr6 66886819 66886860 -122392694 + (CA)n Simple_repeat Simple_repeat 1 41 0 959 266 56 44 chr6 66887682 66887752 -122391802 + L1ME4a LINE L1 5493 5561 -560 377 101 130 14 chr6 66887752 66887821 -122391733 - MADE1 DNA Mariner -3 77 1 959 266 56 44 chr6 66887821 66887865 -122391689 + L1ME4a LINE L1 5561 5603 -518 1618 173 60 11 chr6 66887865 66888148 -122391406 - AluJo SINE Alu -15 297 1 959 266 56 44 chr6 66888148 66888529 -122391025 + L1ME4a LINE L1 5603 5995 -126 22 0 0 0 chr6 66889374 66889396 -122390158 + AT_rich Low_complexity Low_complexity 1 22 0 754 203 7 20 chr6 66891444 66891592 -122387962 - AluJo/FRAM SINE Alu -12 300 155 359 229 14 0 chr6 66891592 66891662 -122387892 - AluJ/FLAM SINE Alu -231 71 1 5698 137 27 57 chr6 66891665 66892735 -122386819 - L1MC1 LINE L1 0 6333 5296 204 67 0 0 chr6 66892738 66892768 -122386786 + (TC)n Simple_repeat Simple_repeat 1 30 0 217 0 61 0 chr6 66892768 66892801 -122386753 + (TA)n Simple_repeat Simple_repeat 1 35 0 6404 87 10 2 chr6 66892802 66893867 -122385687 - L1PA8A LINE L1 -20 6111 5038 1398 156 8 0 chr6 66893864 66894101 -122385453 + L1PA8A LINE L1 4796 5034 -1112 * 1116 227 45 7 chr6 66894097 66894405 -122385149 - L1M4 LINE L1 -810 5336 5017 * 3701 217 44 5 chr6 66894436 66895316 -122384238 - L1M4 LINE L1 -1281 4865 3951 555 250 154 13 chr6 66895418 66895574 -122383980 + MER5A DNA MER1_type 12 189 0 344 331 88 17 chr6 66895641 66895822 -122383732 + MIR SINE MIR 13 206 -56 1882 131 7 11 chr6 66896664 66896947 -122382607 + AluSx SINE Alu 1 282 -30 297 0 0 0 chr6 66896954 66896987 -122382567 + (CAA)n Simple_repeat Simple_repeat 3 35 0 654 170 0 0 chr6 66897066 66897166 -122382388 + AluJb SINE Alu 16 115 -197 222 37 0 0 chr6 66897168 66897195 -122382359 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 316 174 0 98 chr6 66897309 66897401 -122382153 + MLT1J2 LTR MaLR 362 444 -6 191 322 0 0 chr6 66897699 66897758 -122381796 - L2 LINE L2 -5 3308 3250 1315 233 58 0 chr6 66897781 66897898 -122381656 + AluJo SINE Alu 1 110 -202 210 71 0 0 chr6 66897898 66897926 -122381628 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 1315 233 58 0 chr6 66897926 66898083 -122381471 + AluJo SINE Alu 110 291 -21 371 322 85 14 chr6 66898202 66898413 -122381141 + MIR SINE MIR 37 262 0 495 260 164 0 chr6 66898465 66898611 -122380943 - MER5A DNA MER1_type -9 180 11 741 200 56 20 chr6 66898622 66898817 -122380737 + MER3 DNA MER1_type 1 202 -7 249 316 0 0 chr6 66899395 66899474 -122380080 - MLT1L LTR MaLR -536 79 1 272 212 12 47 chr6 66899568 66899653 -122379901 + HAL1b LINE L1 642 723 -625 21 0 0 0 chr6 66899979 66900000 -122379554 + AT_rich Low_complexity Low_complexity 1 21 0 48 18 0 0 chr6 66900264 66900319 -122379235 + AT_rich Low_complexity Low_complexity 1 55 0 2710 175 32 23 chr6 66900439 66901005 -122378549 - L1M4 LINE L1 -2315 3831 3261 318 267 95 9 chr6 66901301 66901406 -122378148 + MER103 DNA DNA 8 121 -45 23 0 0 0 chr6 66901435 66901458 -122378096 + AT_rich Low_complexity Low_complexity 1 23 0 341 330 84 11 chr6 66901824 66902003 -122377551 + L1ME2 LINE L1 3776 3967 -2179 7890 172 20 30 chr6 66902046 66904195 -122375359 + L1P3 LINE L1 1 2185 -4276 2741 240 50 20 chr6 66904209 66905107 -122374447 + L1ME2 LINE L1 5171 6092 -72 193 220 99 77 chr6 66905837 66905928 -122373626 - L2 LINE L2 -3 3310 3218 223 358 62 0 chr6 66907358 66907470 -122372084 + MIR SINE MIR 20 138 -70 494 306 28 0 chr6 66908013 66908157 -122371397 - LTR16A LTR ERVL -2 448 301 329 295 48 19 chr6 66908331 66908436 -122371118 + MIR SINE MIR 65 172 -90 600 279 37 26 chr6 66908438 66908707 -122370847 - LTR16A LTR ERVL -161 289 18 492 311 56 11 chr6 66908792 66908972 -122370582 - MIR SINE MIR -6 256 69 395 301 51 19 chr6 66910125 66910281 -122369273 + MIR SINE MIR 50 210 -52 4003 192 40 60 chr6 66910317 66911267 -122368287 + MER21A LTR ERV1 1 931 0 331 309 129 8 chr6 66911317 66911573 -122367981 - L1MC/D LINE L1 -2267 5541 5255 1376 229 3 0 chr6 66911795 66912079 -122367475 + L1ME2 LINE L1 5479 5763 -403 233 118 0 0 chr6 66912160 66912194 -122367360 - LTR6A LTR ERV1 -458 106 73 937 181 54 5 chr6 66913104 66913308 -122366246 + L1ME2 LINE L1 5759 5972 -192 15030 135 55 35 chr6 66913627 66916281 -122363273 + Tigger2 DNA MER2_type 1 2708 -10 2720 250 32 45 chr6 66916281 66917387 -122362167 + L1ME1 LINE L1 5027 6115 -51 1932 149 3 0 chr6 66917481 66917769 -122361785 + AluSx SINE Alu 3 291 -21 670 207 107 14 chr6 66917869 66918009 -122361545 - FRAM SINE Alu -10 156 4 1766 157 50 38 chr6 66918080 66918423 -122361131 + MLT2B2 LTR ERVL 17 363 -152 207 0 0 0 chr6 66918451 66918474 -122361080 + (CA)n Simple_repeat Simple_repeat 2 24 0 305 164 0 0 chr6 66918492 66918547 -122361007 + MLT2B2 LTR ERVL 466 520 0 2375 148 54 0 chr6 66918722 66919127 -122360427 + MSTA LTR MaLR 2 428 0 186 100 0 60 chr6 66919747 66919797 -122359757 + (TA)n Simple_repeat Simple_repeat 2 48 0 300 355 43 7 chr6 66920349 66920487 -122359067 - MIR SINE MIR -70 192 50 216 289 66 13 chr6 66920994 66921070 -122358484 + L2 LINE L2 3149 3228 -44 25 63 0 38 chr6 66922131 66922210 -122357344 + AT_rich Low_complexity Low_complexity 1 76 0 2302 197 38 77 chr6 66922539 66923219 -122356335 - MLT1E1 LTR MaLR 0 654 1 308 344 119 32 chr6 66923390 66923701 -122355853 + L1ME4a LINE L1 6 343 -5776 1811 198 34 46 chr6 66923731 66924141 -122355413 - MLT2D LTR ERVL -7 407 3 351 272 150 103 chr6 66924162 66924281 -122355273 + L1ME4a LINE L1 375 487 -5632 2224 114 122 16 chr6 66924281 66924667 -122354887 - MSTA LTR MaLR 0 428 2 351 272 150 103 chr6 66924667 66924907 -122354647 + L1ME4a LINE L1 487 751 -5368 488 309 82 16 chr6 66924933 66925383 -122354171 + L1ME4a LINE L1 4113 4592 -1537 23 33 0 0 chr6 66925543 66925573 -122353981 + AT_rich Low_complexity Low_complexity 1 30 0 573 297 89 7 chr6 66925731 66926178 -122353376 + L1ME4a LINE L1 5139 5632 -515 27 29 0 0 chr6 66926332 66926366 -122353188 + AT_rich Low_complexity Low_complexity 1 34 0 358 229 147 73 chr6 66927286 66927608 -122351946 + L1ME4a LINE L1 5636 5978 -126 206 260 0 41 chr6 66928259 66928332 -122351222 - L2 LINE L2 -75 3238 3169 237 325 12 12 chr6 66928522 66928605 -122350949 + L1MEd LINE L1 480 562 -5557 404 251 159 6 chr6 66929406 66929569 -122349985 - MIR SINE MIR -24 238 51 210 37 0 0 chr6 66929643 66929670 -122349884 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1448 212 14 11 chr6 66929676 66929954 -122349600 - AluJo SINE Alu -28 284 6 42 20 0 0 chr6 66930734 66930783 -122348771 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr6 66930969 66931004 -122348550 + AT_rich Low_complexity Low_complexity 1 35 0 204 217 29 14 chr6 66931311 66931380 -122348174 + (TA)n Simple_repeat Simple_repeat 1 70 0 300 27 0 0 chr6 66931638 66931675 -122347879 + (TTA)n Simple_repeat Simple_repeat 3 39 0 824 50 0 0 chr6 66931675 66931776 -122347778 - L1PA4 LINE L1 -18 6137 6037 1516 142 123 0 chr6 66932376 66932629 -122346925 - AluJb SINE Alu -27 285 2 249 307 20 87 chr6 66933099 66933249 -122346305 + MIR SINE MIR 2 141 -121 2531 47 15 0 chr6 66933450 66933791 -122345763 - L1P LINE L1 -3284 2862 2517 33 66 0 0 chr6 66933970 66934031 -122345523 + AT_rich Low_complexity Low_complexity 1 61 0 343 189 33 25 chr6 66934769 66934891 -122344663 - L1M4 LINE L1 -816 5330 5208 356 273 168 66 chr6 66935479 66935735 -122343819 + MLT1J LTR MaLR 94 375 -136 225 94 0 0 chr6 66935783 66935815 -122343739 + (CA)n Simple_repeat Simple_repeat 2 33 0 1549 196 42 10 chr6 66937664 66937970 -122341584 + MER1B DNA MER1_type 24 339 0 352 176 40 0 chr6 66938797 66938871 -122340683 + MER116 DNA Mariner 2 78 -2 330 299 0 0 chr6 66938886 66938953 -122340601 + MER82 DNA MER2_type 459 525 -128 299 282 24 24 chr6 66939159 66939283 -122340271 - L1M4 LINE L1 -3604 2542 2419 897 222 8 12 chr6 66939342 66939585 -122339969 + L1M4 LINE L1 5089 5330 -816 5744 191 28 28 chr6 66939844 66941798 -122337756 - L1MC1 LINE L1 -1 6332 4370 3194 41 2 0 chr6 66941798 66942191 -122337363 + L1PA4 LINE L1 5757 6150 -5 5744 191 28 28 chr6 66942191 66942344 -122337210 - L1MC1 LINE L1 -1963 4370 4219 2324 96 0 7 chr6 66942418 66942721 -122336833 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr6 66943336 66943357 -122336197 + AT_rich Low_complexity Low_complexity 1 21 0 762 263 168 103 chr6 66944739 66944970 -122334584 + L2 LINE L2 2045 2259 -1054 264 30 0 0 chr6 66944970 66945003 -122334551 + (TG)n Simple_repeat Simple_repeat 2 34 0 762 263 168 103 chr6 66945003 66945220 -122334334 + L2 LINE L2 2259 2460 -853 252 145 0 81 chr6 66945220 66945282 -122334272 - Charlie6 DNA MER1_type -2179 1321 1265 762 263 168 103 chr6 66945282 66945919 -122333635 + L2 LINE L2 2460 3264 -49 603 314 35 43 chr6 66946049 66946307 -122333247 + MIR SINE MIR 7 262 0 1706 175 0 20 chr6 66946369 66946666 -122332888 - AluJo SINE Alu -21 291 1 2464 69 0 3 chr6 66947182 66947488 -122332066 + AluY SINE Alu 1 305 -6 668 148 19 9 chr6 66950518 66950626 -122328928 + FLAM_A SINE Alu 1 109 -33 243 214 143 12 chr6 66950745 66950829 -122328725 + MER103 DNA DNA 2 96 -70 4569 166 36 59 chr6 66950905 66951068 -122328486 - L1MA7 LINE L1 -10 6281 6116 2749 88 5 8 chr6 66951068 66951453 -122328101 + L1PA8 LINE L1 5783 6166 -6 4569 166 36 59 chr6 66951453 66952319 -122327235 - L1MA7 LINE L1 -175 6116 5282 1556 81 23 5 chr6 66952319 66952540 -122327014 + L1PA10 LINE L1 5939 6163 -5 4569 166 36 59 chr6 66952540 66953376 -122326178 - L1MA7 LINE L1 -1009 5282 4428 27 29 0 0 chr6 66954993 66955027 -122324527 + AT_rich Low_complexity Low_complexity 1 34 0 3674 127 82 33 chr6 66956643 66957336 -122322218 + LTR8A LTR ERV1 1 727 0 761 163 12 47 chr6 66957774 66957946 -122321608 + LTR28 LTR ERV1 2 167 -853 * 1717 162 70 12 chr6 66957931 66958258 -122321296 + LTR27 LTR ERV1 291 636 0 1185 98 0 0 chr6 66959371 66959534 -122320020 - AluY SINE Alu 0 311 149 2057 114 31 0 chr6 66959619 66959909 -122319645 + AluSx SINE Alu 14 312 0 2082 126 0 35 chr6 66959914 66960047 -122319507 + AluSg SINE Alu 1 137 -173 2417 59 0 16 chr6 66960047 66960350 -122319204 + AluY SINE Alu 1 298 -13 2082 126 0 35 chr6 66960350 66960533 -122319021 + AluSg SINE Alu 137 306 -4 534 57 0 0 chr6 66960575 66960645 -122318909 + (TG)n Simple_repeat Simple_repeat 2 71 0 2121 147 0 0 chr6 66961766 66962078 -122317476 + AluSx SINE Alu 1 312 0 351 295 139 20 chr6 66962191 66962435 -122317119 - L3 LINE CR1 -176 1401 1129 14734 31 1 1 chr6 66962455 66964250 -122315304 + L1P LINE L1 2530 4325 -1821 1090 189 87 25 chr6 66964427 66964769 -122314785 + MSTD LTR MaLR 3 396 0 2131 113 3 3 chr6 66964949 66965242 -122314312 + AluSg1 SINE Alu 1 293 -16 246 62 0 0 chr6 66965242 66965274 -122314280 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 22 35 0 0 chr6 66965317 66965346 -122314208 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 66965499 66965528 -122314026 + AT_rich Low_complexity Low_complexity 1 29 0 529 266 116 9 chr6 66965643 66965876 -122313678 - MER20B DNA MER1_type 0 783 526 269 304 81 62 chr6 66966012 66966173 -122313381 - MER20B DNA MER1_type -542 241 78 188 295 121 24 chr6 66966971 66967137 -122312417 - MIR SINE MIR -59 203 22 2259 108 7 3 chr6 66967763 66968070 -122311484 - AluSx SINE Alu -1 311 4 260 217 0 0 chr6 66968027 66968073 -122311481 - AluJ/monomer SINE Alu -253 46 1 378 306 132 23 chr6 66968988 66969207 -122310347 + MIR SINE MIR 20 262 0 1063 181 72 1 chr6 66970667 66970926 -122308628 + L1MA8 LINE L1 5755 6038 -120 205 50 25 25 chr6 66970936 66970976 -122308578 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 1516 184 11 0 chr6 66972236 66972497 -122307057 + Tigger7 DNA MER2_type 1 264 -2223 541 216 0 0 chr6 66972499 66972596 -122306958 + Tigger7 DNA MER2_type 2491 2587 0 385 224 154 42 chr6 66972601 66972744 -122306810 + MIR SINE MIR 104 262 0 345 290 11 0 chr6 66972972 66973065 -122306489 + MIR3 SINE MIR 98 191 -17 858 238 84 0 chr6 66973795 66973997 -122305557 + MER58A DNA MER1_type 2 220 -4 26 30 0 0 chr6 66974103 66974136 -122305418 + AT_rich Low_complexity Low_complexity 1 33 0 2143 108 3 19 chr6 66974686 66974993 -122304561 - AluSg SINE Alu -8 302 1 267 245 0 0 chr6 66975956 66976005 -122303549 + L2 LINE L2 3247 3295 -18 2515 144 41 5 chr6 66976786 66977203 -122302351 + MSTB1 LTR MaLR 1 432 0 220 200 0 0 chr6 66977509 66977549 -122302005 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 604 250 0 0 chr6 66977708 66977840 -122301714 + FLAM_A SINE Alu 1 132 -1 2972 143 52 15 chr6 66978913 66979475 -122300079 + LTR24B LTR ERV1 1 635 0 3002 197 75 9 chr6 66979818 66980482 -122299072 + MER67C LTR ERV1 1 708 -2 204 348 18 18 chr6 66980804 66980916 -122298638 + L2 LINE L2 2943 3054 -218 1662 194 0 7 chr6 66981217 66981527 -122298027 - AluJo SINE Alu -4 308 1 1095 160 123 47 chr6 66981561 66981861 -122297693 + MER33 DNA MER1_type 1 323 -1 2802 10 0 0 chr6 66981885 66982196 -122297358 + AluYa5 SINE Alu 1 311 0 283 262 50 78 chr6 66982577 66982718 -122296836 - L2 LINE L2 -24 3289 3153 262 252 57 89 chr6 66982999 66983122 -122296432 - MLT1J LTR MaLR -289 222 104 566 189 11 0 chr6 66983122 66983217 -122296337 + MER2 DNA MER2_type 2 97 -248 221 70 70 0 chr6 66983224 66983281 -122296273 + (TTATA)n Simple_repeat Simple_repeat 4 64 0 50 31 0 0 chr6 66983281 66983345 -122296209 + AT_rich Low_complexity Low_complexity 1 64 0 585 164 26 9 chr6 66983345 66983461 -122296093 + MER2 DNA MER2_type 66 183 -162 236 318 16 0 chr6 66983535 66983598 -122295956 + MER2 DNA MER2_type 282 345 0 230 308 81 81 chr6 66983694 66983821 -122295733 - L2 LINE L2 -176 3137 3008 1909 121 0 60 chr6 66983821 66984135 -122295419 + AluSq SINE Alu 1 295 -18 230 308 81 81 chr6 66984135 66984179 -122295375 - L2 LINE L2 -304 3009 2966 1416 184 121 48 chr6 66984385 66984716 -122294838 - MLT2C1 LTR ERVL -39 358 4 236 147 0 1 chr6 66984978 66985196 -122294358 + AluSq SINE Alu 1 248 -52 580 266 40 6 chr6 66985260 66985433 -122294121 - MER93b LTR ERV1 -4 369 191 189 0 0 0 chr6 66985498 66985519 -122294035 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 32 26 0 0 chr6 66986681 66986720 -122292834 + AT_rich Low_complexity Low_complexity 1 39 0 1241 130 0 0 chr6 66986904 66987081 -122292473 + AluSg/x SINE Alu 94 270 -42 318 308 25 61 chr6 66987225 66987423 -122292131 + MLT1J LTR MaLR 110 300 -211 414 341 106 24 chr6 66987681 66988059 -122291495 - L2 LINE L2 -1222 2092 1684 21 0 0 0 chr6 66990240 66990261 -122289293 + AT_rich Low_complexity Low_complexity 1 21 0 1086 203 32 8 chr6 66990697 66990785 -122288769 + L1MD3 LINE L1 7730 7814 -181 1686 95 0 0 chr6 66990785 66991007 -122288547 - AluSg/x SINE Alu -11 299 78 1086 203 32 8 chr6 66991007 66991164 -122288390 + L1MD3 LINE L1 7814 7981 -14 214 204 0 20 chr6 66991536 66991585 -122287969 + GA-rich Low_complexity Low_complexity 1 48 0 556 225 58 116 chr6 66991806 66992082 -122287472 + MER102a DNA MER1_type 38 297 -33 1739 177 0 3 chr6 66992283 66992594 -122286960 - AluJb SINE Alu 0 312 3 314 259 134 27 chr6 66992722 66992834 -122286720 + MIR SINE MIR 118 241 -21 1092 162 24 19 chr6 66993357 66993567 -122285987 + AluJb SINE Alu 95 305 -7 276 331 52 22 chr6 66993699 66993777 -122285777 - L2 LINE L2 -6 3307 3222 1941 91 0 0 chr6 66993777 66994029 -122285525 + AluY SINE Alu 55 306 -5 276 331 52 22 chr6 66994029 66994086 -122285468 - L2 LINE L2 -91 3222 3168 231 252 118 42 chr6 66994208 66994327 -122285227 - L1ME4a LINE L1 -3 6118 5991 283 214 0 0 chr6 66994501 66994557 -122284997 + L1MC4 LINE L1 7475 7530 -512 700 231 108 10 chr6 66994660 66994855 -122284699 + L1MC4a LINE L1 7595 7808 0 282 303 62 0 chr6 66994904 66995049 -122284505 - L1ME4a LINE L1 -292 5829 5676 247 213 13 55 chr6 66996432 66996543 -122283011 + MER90 LTR ERV1 379 569 -6 201 320 95 54 chr6 66996932 66997079 -122282475 + MIR3 SINE MIR 16 168 -40 270 303 189 8 chr6 66997288 66997410 -122282144 + MER5A DNA MER1_type 46 189 0 211 219 0 0 chr6 66998072 66998113 -122281441 + MIR3 SINE MIR 114 154 -54 237 343 112 21 chr6 66998113 66998165 -122281389 + MER5B DNA MER1_type 4 50 -128 2207 109 0 19 chr6 66998165 66998478 -122281076 - AluSx SINE Alu -5 307 1 237 343 112 21 chr6 66998478 66998568 -122280986 + MER5B DNA MER1_type 50 159 -19 274 306 10 10 chr6 66998597 66998695 -122280859 + MER5A DNA MER1_type 9 106 -83 235 191 0 21 chr6 66998832 66998879 -122280675 + L2 LINE L2 3268 3313 0 226 298 117 58 chr6 66999139 66999327 -122280227 + L2 LINE L2 1913 2111 -1203 211 175 16 16 chr6 66999423 66999486 -122280068 + G-rich Low_complexity Low_complexity 4 66 0 587 159 9 0 chr6 66999599 66999712 -122279842 + G-rich Low_complexity Low_complexity 2 115 0 219 282 39 78 chr6 67000036 67000139 -122279415 - MER5A DNA MER1_type -56 133 35 613 233 8 0 chr6 67001313 67001433 -122278121 + MER5A DNA MER1_type 1 121 -68 828 222 11 27 chr6 67001496 67001681 -122277873 + MER5A DNA MER1_type 5 186 -3 2369 103 0 0 chr6 67001724 67002036 -122277518 - AluSx SINE Alu 0 312 1 342 283 148 42 chr6 67003308 67003545 -122276009 - MIR SINE MIR 0 262 1 723 152 109 36 chr6 67003752 67003917 -122275637 - MER3 DNA MER1_type -4 205 29 21 0 0 0 chr6 67004544 67004565 -122274989 + AT_rich Low_complexity Low_complexity 1 21 0 2500 53 0 0 chr6 67004750 67005053 -122274501 - AluY SINE Alu -8 303 1 192 77 0 0 chr6 67005407 67005433 -122274121 + (T)n Simple_repeat Simple_repeat 1 26 0 28 61 0 0 chr6 67005784 67005833 -122273721 + AT_rich Low_complexity Low_complexity 1 49 0 2016 126 3 10 chr6 67005966 67006268 -122273286 + AluSx SINE Alu 1 300 -12 360 130 0 0 chr6 67006605 67006659 -122272895 - AluSc SINE Alu -10 289 236 2102 110 0 0 chr6 67006886 67007206 -122272348 + AluSx SINE Alu 1 320 0 198 128 0 0 chr6 67007684 67007723 -122271831 + (T)n Simple_repeat Simple_repeat 1 39 0 582 38 0 25 chr6 67007820 67007900 -122271654 - MER11A LTR ERVK 0 1266 1189 * 702 129 0 0 chr6 67007887 67007988 -122271566 - MER11B LTR ERVK -1135 101 1 441 277 119 11 chr6 67009778 67009955 -122269599 - MIR SINE MIR 0 262 67 376 263 134 27 chr6 67010150 67010374 -122269180 + MER112 DNA MER1_type 2 249 -11 316 325 89 8 chr6 67010982 67011105 -122268449 - MER5A DNA MER1_type -1 188 56 254 341 45 0 chr6 67011785 67011873 -122267681 + MIR SINE MIR 12 103 -159 300 322 107 0 chr6 67011937 67012058 -122267496 - MIR SINE MIR -55 207 74 180 77 0 0 chr6 67012508 67012534 -122267020 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2301 109 0 3 chr6 67012944 67013255 -122266299 + AluSg SINE Alu 1 310 0 48 18 0 0 chr6 67014644 67014699 -122264855 + AT_rich Low_complexity Low_complexity 1 55 0 240 309 74 40 chr6 67014790 67014939 -122264615 + MIR SINE MIR 63 216 -46 240 324 176 25 chr6 67015582 67015786 -122263768 + MIR SINE MIR 22 256 -6 182 316 13 51 chr6 67016187 67016266 -122263288 + MIR SINE MIR 63 138 -124 509 266 19 32 chr6 67016287 67016445 -122263109 + MIR SINE MIR 63 218 -44 213 287 50 59 chr6 67017711 67017812 -122261742 - L2 LINE L2 -505 2809 2710 7221 43 0 4 chr6 67018258 67019582 -122259972 + L1PA5 LINE L1 4832 6151 -3 636 321 106 45 chr6 67020344 67020768 -122258786 - L2 LINE L2 -4 3309 2860 236 370 87 0 chr6 67020847 67021055 -122258499 - L2 LINE L2 -1186 2128 1903 1094 201 21 58 chr6 67021071 67021400 -122258154 + L1M4 LINE L1 4869 5185 -961 290 122 0 0 chr6 67021400 67021441 -122258113 + Alu SINE Alu 1 41 -262 788 241 5 9 chr6 67021443 67021663 -122257891 + L1MC/D LINE L1 4967 5185 -961 1860 146 3 31 chr6 67021663 67021984 -122257570 + AluSx SINE Alu 1 312 0 1417 147 25 104 chr6 67021996 67022323 -122257231 + AluYb8 SINE Alu 1 301 -17 817 276 9 48 chr6 67022326 67022789 -122256765 - L1 LINE L1 -1534 4612 4186 3316 249 177 21 chr6 67022840 67023976 -122255578 - L1MDb LINE L1 -5081 1328 16 225 243 29 29 chr6 67024298 67024368 -122255186 - MIR SINE MIR -15 247 178 24 32 0 0 chr6 67024384 67024415 -122255139 + AT_rich Low_complexity Low_complexity 1 31 0 5059 170 30 32 chr6 67024464 67024734 -122254820 - L1MA7 LINE L1 -4 6287 6018 2183 105 0 16 chr6 67024734 67025047 -122254507 - AluY SINE Alu -3 308 1 5059 170 30 32 chr6 67025047 67026035 -122253519 - L1MA7 LINE L1 -273 6018 5030 980 177 92 68 chr6 67026211 67026460 -122253094 - AluJb SINE Alu -57 255 1 585 216 54 48 chr6 67026460 67026627 -122252927 + L1MC/D LINE L1 5305 5472 -770 1395 151 97 37 chr6 67027195 67027539 -122252015 - MSTA LTR MaLR 0 428 19 7005 234 13 24 chr6 67027801 67028131 -122251423 - L1PA15-16 LINE L1 -2865 4719 4387 2229 118 0 10 chr6 67028131 67028437 -122251117 - AluSx SINE Alu -9 303 1 7005 234 13 24 chr6 67028437 67030404 -122249150 - L1PA15-16 LINE L1 -3197 4387 2453 749 150 61 0 chr6 67030419 67030566 -122248988 - AluSc SINE Alu 0 309 154 472 316 54 17 chr6 67031290 67031587 -122247967 - L1PA15-16 LINE L1 -7266 315 8 620 277 92 46 chr6 67031741 67032391 -122247163 - L1ME LINE L1 -589 5573 4900 460 249 163 69 chr6 67032491 67032515 -122247039 - L1ME LINE L1 -1320 4826 4806 2118 117 3 0 chr6 67032515 67032815 -122246739 - AluSg SINE Alu -9 301 1 460 249 163 69 chr6 67032815 67033208 -122246346 - L1ME LINE L1 -1340 4806 4370 290 214 24 0 chr6 67033214 67033298 -122246256 - L1MD1 LINE L1 -1 6241 6156 5478 219 58 38 chr6 67033303 67033886 -122245668 - L1MD1 LINE L1 -312 5930 5360 2589 118 0 3 chr6 67033886 67034251 -122245303 + THE1B LTR MaLR 1 364 0 5478 219 58 38 chr6 67034251 67036037 -122243517 - L1MD1 LINE L1 -882 5360 3522 533 221 50 65 chr6 67036063 67036262 -122243292 + L1M4 LINE L1 3299 3494 -2652 9510 224 48 25 chr6 67036284 67038934 -122240620 - L1 LINE L1 -1989 5576 2970 275 65 22 0 chr6 67038934 67038980 -122240574 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 9510 224 48 25 chr6 67038980 67039875 -122239679 - L1 LINE L1 -4595 2970 2097 551 280 29 29 chr6 67040206 67040413 -122239141 - L1 LINE L1 -6949 617 411 1493 193 61 7 chr6 67040423 67040719 -122238835 - AluSx SINE Alu 0 312 1 2140 107 7 0 chr6 67040742 67041031 -122238523 + AluSg SINE Alu 1 291 -19 25 0 0 0 chr6 67041556 67041581 -122237973 + AT_rich Low_complexity Low_complexity 1 25 0 1042 254 67 53 chr6 67042059 67043024 -122236530 - L1ME3A LINE L1 -17 6153 5129 387 327 63 13 chr6 67043351 67043510 -122236044 + MIR SINE MIR 22 188 -74 198 254 135 56 chr6 67043603 67043729 -122235825 - MIR SINE MIR 0 262 127 1190 249 52 30 chr6 67044169 67044531 -122235023 - MLT1A2 LTR MaLR 0 374 5 191 315 213 23 chr6 67044895 67045111 -122234443 - MIR SINE MIR -4 258 2 22 56 0 0 chr6 67045602 67045638 -122233916 + AT_rich Low_complexity Low_complexity 1 36 0 502 276 8 0 chr6 67046217 67046340 -122233214 + FLAM_A SINE Alu 1 124 -9 239 163 92 0 chr6 67047773 67047871 -122231683 + (TA)n Simple_repeat Simple_repeat 2 108 0 857 195 13 0 chr6 67047871 67048030 -122231524 - Tigger2 DNA MER2_type -10 2708 2548 * 963 166 50 10 chr6 67047997 67048196 -122231358 - Tigger2 DNA MER2_type -2505 213 7 299 241 179 9 chr6 67048957 67049069 -122230485 + MIR SINE MIR 118 248 -14 23 33 0 0 chr6 67050018 67050048 -122229506 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 67050377 67050399 -122229155 + AT_rich Low_complexity Low_complexity 1 22 0 5272 105 32 8 chr6 67050399 67051189 -122228365 - L1PA13 LINE L1 0 6163 5355 * 7780 198 26 24 chr6 67051177 67052779 -122226775 - L1M1 LINE L1 -5939 1626 22 873 218 38 17 chr6 67054217 67054456 -122225098 + MER96B DNA MER1_type? 2 245 -172 1951 144 0 16 chr6 67054597 67054902 -122224652 - AluSx SINE Alu -12 300 1 398 245 46 26 chr6 67055363 67055511 -122224043 + MLT1J2 LTR MaLR 1 150 -261 1515 146 40 29 chr6 67056824 67057099 -122222455 - AluJb SINE Alu -9 303 26 324 361 107 35 chr6 67057141 67057487 -122222067 - L2 LINE L2 -564 2750 2380 190 164 16 16 chr6 67058970 67059031 -122220523 + CT-rich Low_complexity Low_complexity 6 66 0 220 254 17 0 chr6 67059889 67059948 -122219606 + L2 LINE L2 1939 1998 -1316 23 54 0 0 chr6 67060296 67060333 -122219221 + AT_rich Low_complexity Low_complexity 1 37 0 623 338 106 27 chr6 67060334 67060755 -122218799 + L2 LINE L2 2392 2863 -451 2084 132 0 0 chr6 67060755 67061058 -122218496 - AluSg SINE Alu -7 303 1 623 338 106 27 chr6 67061058 67061154 -122218400 + L2 LINE L2 2863 2950 -364 330 190 17 0 chr6 67061308 67061366 -122218188 + Tigger5 DNA MER2_type 2265 2323 0 231 300 0 0 chr6 67061837 67061907 -122217647 + MIR SINE MIR 188 257 -5 422 210 140 49 chr6 67063362 67063457 -122216097 - MIR SINE MIR -42 220 106 2186 116 3 0 chr6 67063457 67063768 -122215786 + AluSx SINE Alu 1 312 0 422 210 140 49 chr6 67063768 67063815 -122215739 - MIR SINE MIR -156 106 65 23 33 0 0 chr6 67065530 67065560 -122213994 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 67066143 67066171 -122213383 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr6 67066337 67066364 -122213190 + AT_rich Low_complexity Low_complexity 1 27 0 9594 101 2 1 chr6 67067046 67068351 -122211203 - THE1A-int LTR MaLR -273 1307 1 753 118 0 0 chr6 67068351 67068453 -122211101 - THE1A LTR MaLR 0 355 254 246 245 0 0 chr6 67068604 67068653 -122210901 - MIR SINE MIR -68 140 92 2112 112 10 0 chr6 67068809 67069104 -122210450 - AluSx SINE Alu -14 298 1 1541 227 40 42 chr6 67069104 67069553 -122210001 + L1MD2 LINE L1 5911 6358 -1 1584 130 96 7 chr6 67069564 67069856 -122209698 + L1MA8 LINE L1 5793 6110 -181 1309 183 35 0 chr6 67070584 67070841 -122208713 - L1 LINE L1 -1246 4900 4635 245 359 11 0 chr6 67070863 67070955 -122208599 - MIR SINE MIR -121 141 49 2194 129 3 0 chr6 67071007 67071317 -122208237 - AluSp SINE Alu -2 311 1 1563 192 29 0 chr6 67072262 67072569 -122206985 - AluSx SINE Alu 0 315 1 2835 157 56 18 chr6 67073066 67073324 -122206230 - LTR45 LTR ERV1 -2 523 276 1878 144 160 5 chr6 67073324 67073693 -122205861 + MSTA LTR MaLR 3 428 0 2835 157 56 18 chr6 67073693 67073938 -122205616 - LTR45 LTR ERV1 -249 276 1 5125 155 20 18 chr6 67074442 67075036 -122204518 + MER4D LTR ERV1 1 599 -304 2032 110 13 29 chr6 67075036 67075344 -122204210 - AluSq SINE Alu -10 303 1 5125 155 20 18 chr6 67075344 67075650 -122203904 + MER4D LTR ERV1 599 903 0 330 87 0 0 chr6 67076127 67076173 -122203381 + (TG)n Simple_repeat Simple_repeat 2 47 0 385 214 0 80 chr6 67076221 67076333 -122203221 + MER5A DNA MER1_type 4 106 -83 9669 47 0 0 chr6 67078017 67079987 -122199567 + L1PA5 LINE L1 4175 6148 -6 194 189 0 0 chr6 67080102 67080139 -122199415 + L2 LINE L2 3273 3309 -4 2578 181 19 31 chr6 67081002 67081443 -122198111 - L1MC2 LINE L1 -17 6327 5893 2258 114 0 3 chr6 67081443 67081751 -122197803 - AluSq SINE Alu -5 308 2 2578 181 19 31 chr6 67081751 67081882 -122197672 - L1MC2 LINE L1 -451 5893 5762 1940 247 35 2 chr6 67081886 67082421 -122197133 - L1MC2 LINE L1 -963 5183 4631 2280 105 3 0 chr6 67082835 67083141 -122196413 - AluSg SINE Alu -3 307 1 22 56 0 0 chr6 67083152 67083188 -122196366 + AT_rich Low_complexity Low_complexity 1 36 0 222 355 0 51 chr6 67083726 67083864 -122195690 - MIR SINE MIR -52 210 80 1788 137 40 0 chr6 67083955 67084233 -122195321 + AluSq SINE Alu 1 289 -24 1817 145 36 20 chr6 67084258 67084561 -122194993 + AluSx SINE Alu 1 308 -4 2682 130 7 19 chr6 67084732 67085163 -122194391 + MSTA LTR MaLR 3 428 0 26 30 0 0 chr6 67085715 67085748 -122193806 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr6 67086328 67086364 -122193190 + AT_rich Low_complexity Low_complexity 1 36 0 207 269 129 54 chr6 67086368 67086461 -122193093 - L2 LINE L2 -37 3235 3136 186 405 20 26 chr6 67138989 67139142 -122140412 - L2 LINE L2 -217 3055 2904 856 249 43 0 chr6 67140253 67140462 -122139092 + MER20B DNA MER1_type 1 218 -1 2107 115 11 0 chr6 67141011 67141297 -122138257 - AluSc SINE Alu -8 301 13 1159 192 27 14 chr6 67141680 67141899 -122137655 + AluSg/x SINE Alu 85 306 -4 29 60 0 0 chr6 67143504 67143554 -122136000 + AT_rich Low_complexity Low_complexity 1 50 0 417 226 61 9 chr6 67144262 67144377 -122135177 + MER97c DNA MER1_type? 58 178 -912 3484 56 2 0 chr6 67144919 67145365 -122134189 - L1PA5 LINE L1 -1 6153 5707 583 266 109 60 chr6 67145443 67145691 -122133863 - MIR SINE MIR 0 262 3 197 352 102 34 chr6 67145834 67146070 -122133484 + L2 LINE L2 2828 3079 -193 4745 136 5 5 chr6 67146182 67146931 -122132623 + L1P LINE L1 3544 4292 -1854 21 36 0 0 chr6 67147004 67147032 -122132522 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 67147094 67147123 -122132431 + AT_rich Low_complexity Low_complexity 1 29 0 496 328 48 5 chr6 67147165 67147354 -122132200 + L2 LINE L2 3116 3312 -1 259 312 32 11 chr6 67147825 67147918 -122131636 - MIR SINE MIR -151 111 17 807 339 155 33 chr6 67148579 67149351 -122130203 - L2 LINE L2 -240 3073 2190 211 250 36 0 chr6 67150545 67150601 -122128953 + MER5A DNA MER1_type 132 189 0 180 77 0 0 chr6 67151177 67151203 -122128351 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 231 329 91 35 chr6 67153067 67153210 -122126344 - L2 LINE L2 -5 3308 3158 180 290 0 75 chr6 67153349 67153442 -122126112 + MIR3 SINE MIR 111 196 -12 805 88 0 0 chr6 67153826 67153928 -122125626 + AluSg1 SINE Alu 12 113 -196 207 167 0 0 chr6 67154330 67154366 -122125188 + L2 LINE L2 3216 3251 -21 1074 299 126 20 chr6 67155421 67156244 -122123310 + L2 LINE L2 2400 3313 0 539 211 47 16 chr6 67156702 67156830 -122122724 + MIR SINE MIR 121 252 -10 24 0 0 0 chr6 67157724 67157748 -122121806 + AT_rich Low_complexity Low_complexity 1 24 0 2070 111 24 3 chr6 67157847 67158144 -122121410 + AluSq SINE Alu 1 303 -10 378 0 0 0 chr6 67158145 67158187 -122121367 + (TA)n Simple_repeat Simple_repeat 2 43 0 247 295 0 18 chr6 67158667 67158833 -122120721 + CT-rich Low_complexity Low_complexity 3 165 0 191 218 182 18 chr6 67159345 67159400 -122120154 - MIR SINE MIR -71 137 74 857 162 0 34 chr6 67161303 67161451 -122118103 + FLAM_C SINE Alu 1 143 0 1837 163 54 0 chr6 67162694 67162869 -122116685 - AluSx SINE Alu -1 311 112 369 0 0 0 chr6 67162869 67162910 -122116644 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1837 163 54 0 chr6 67162910 67163029 -122116525 - AluSx SINE Alu -200 112 1 22 56 0 0 chr6 67164670 67164706 -122114848 + AT_rich Low_complexity Low_complexity 1 36 0 607 302 60 9 chr6 67164963 67165178 -122114376 + L3 LINE CR1 1203 1428 -149 227 266 71 80 chr6 67165250 67165363 -122114191 - MER5B DNA MER1_type 0 178 78 21 36 0 0 chr6 67166260 67166288 -122113266 + AT_rich Low_complexity Low_complexity 1 28 0 476 287 56 10 chr6 67166306 67166501 -122113053 + MLT1J LTR MaLR 6 209 -302 339 206 160 15 chr6 67166543 67166674 -122112880 + MLT1J LTR MaLR 343 492 -19 323 159 53 93 chr6 67166858 67166955 -122112599 - MLT1H LTR MaLR 0 542 452 346 304 41 23 chr6 67167124 67167295 -122112259 - MLT1H LTR MaLR -375 174 1 2099 121 0 40 chr6 67167651 67167974 -122111580 + AluSx SINE Alu 3 312 0 590 37 0 12 chr6 67169480 67169562 -122109992 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 4816 173 32 47 chr6 67169985 67170321 -122109233 - L1MB1 LINE L1 0 6168 5828 2054 127 30 0 chr6 67170321 67170621 -122108933 - AluSx SINE Alu -2 310 2 4816 173 32 47 chr6 67170621 67172345 -122107209 - L1MB1 LINE L1 -340 5828 4143 1667 162 13 108 chr6 67172345 67172807 -122106747 + L1MB1 LINE L1 3749 4166 -1980 1002 120 80 6 chr6 67173074 67173249 -122106305 - MSTA LTR MaLR -240 188 1 201 404 58 0 chr6 67173418 67173522 -122106032 - L2 LINE L2 -52 3220 3111 262 270 79 0 chr6 67174355 67174444 -122105110 + MIR SINE MIR 141 236 -26 2098 125 0 0 chr6 67176334 67176735 -122102819 - AluY SINE Alu 0 311 1 261 0 0 0 chr6 67177236 67177265 -122102289 + (TA)n Simple_repeat Simple_repeat 1 29 0 1024 149 11 6 chr6 67177265 67177439 -122102115 - AluSg/x SINE Alu -1 311 137 935 144 4 144 chr6 67177818 67178082 -122101472 + L1MA6 LINE L1 5901 6127 -173 2344 105 0 0 chr6 67178104 67178408 -122101146 - AluSg SINE Alu -6 304 1 302 265 48 101 chr6 67178415 67178604 -122100950 + L1ME3 LINE L1 5901 6079 -83 2406 60 0 10 chr6 67179091 67179389 -122100165 - AluY SINE Alu -16 295 1 210 37 0 0 chr6 67179693 67179720 -122099834 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 324 0 0 0 chr6 67180170 67180206 -122099348 + (TTA)n Simple_repeat Simple_repeat 2 37 0 184 0 0 88 chr6 67180245 67180279 -122099275 + (TTTTTA)n Simple_repeat Simple_repeat 2 32 0 190 329 50 81 chr6 67181240 67181401 -122098153 - MIR SINE MIR -85 177 22 2513 59 0 7 chr6 67181512 67181815 -122097739 - AluY SINE Alu -10 301 1 265 276 64 44 chr6 67181983 67182186 -122097368 + L1ME LINE L1 5688 5894 -227 289 340 0 19 chr6 67182255 67182414 -122097140 - L2 LINE L2 -341 2973 2818 7939 13 0 0 chr6 67182635 67183783 -122095771 - L1HS LINE L1 0 6155 5008 3160 19 0 0 chr6 67183778 67184143 -122095411 + L1HS LINE L1 4641 5005 -1141 * 560 235 91 37 chr6 67184229 67184472 -122095082 - MER20B DNA MER1_type -3 780 525 698 266 99 16 chr6 67184598 67184850 -122094704 - MER20B DNA MER1_type -440 343 71 24 32 0 0 chr6 67185664 67185695 -122093859 + AT_rich Low_complexity Low_complexity 1 31 0 192 313 0 0 chr6 67186366 67186414 -122093140 + L2 LINE L2 3208 3255 -17 1658 122 83 56 chr6 67186643 67186931 -122092623 - AluSg SINE Alu -14 296 1 2243 114 7 0 chr6 67187380 67187686 -122091868 + AluSg SINE Alu 1 308 -2 216 97 0 0 chr6 67188056 67188087 -122091467 + (TA)n Simple_repeat Simple_repeat 2 32 0 270 56 0 0 chr6 67188087 67188123 -122091431 + (GA)n Simple_repeat Simple_repeat 1 36 0 196 380 0 0 chr6 67188874 67188953 -122090601 - MIR SINE MIR -80 128 50 2030 203 30 49 chr6 67189409 67189916 -122089638 - MLT1D LTR MaLR -8 497 1 25 51 0 0 chr6 67190069 67190108 -122089446 + AT_rich Low_complexity Low_complexity 1 39 0 222 37 0 0 chr6 67190108 67190135 -122089419 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1622 174 0 17 chr6 67190137 67190424 -122089130 - AluJo SINE Alu -30 282 1 2019 141 0 10 chr6 67190555 67190852 -122088702 - AluSx SINE Alu -18 294 1 644 275 35 10 chr6 67191185 67191385 -122088169 - MIR SINE MIR 0 262 58 184 300 42 50 chr6 67191643 67191763 -122087791 + L2 LINE L2 2635 2753 -561 1451 293 60 2 chr6 67191875 67192309 -122087245 + L2 LINE L2 2447 2905 -409 1434 207 0 46 chr6 67192402 67192726 -122086828 + AluJo SINE Alu 3 311 -1 6592 69 0 4 chr6 67193249 67194497 -122085057 - L1PA8 LINE L1 -3 6169 4934 24189 135 39 46 chr6 67194502 67197615 -122081939 - L1PA8 LINE L1 -1591 4555 1481 2221 102 41 0 chr6 67197615 67197910 -122081644 - AluY SINE Alu -4 307 1 24189 135 39 46 chr6 67197910 67199381 -122080173 - L1PA8 LINE L1 -4665 1481 2 30 0 0 0 chr6 67199391 67199421 -122080133 + AT_rich Low_complexity Low_complexity 1 30 0 1521 215 6 12 chr6 67199492 67199822 -122079732 - L1M3 LINE L1 -376 5804 5477 280 281 11 0 chr6 67199860 67199949 -122079605 + L1MC/D LINE L1 5683 5772 -2036 438 328 66 0 chr6 67200175 67200358 -122079196 + MLT1J LTR MaLR 191 385 -126 4243 286 112 30 chr6 67200434 67202261 -122077293 - L2 LINE L2 -655 2659 682 476 71 29 0 chr6 67202307 67202377 -122077177 - MSTA LTR MaLR 0 428 357 1474 149 8 0 chr6 67202378 67202613 -122076941 + AluSx SINE Alu 1 237 -75 32 57 0 0 chr6 67203385 67203438 -122076116 + AT_rich Low_complexity Low_complexity 1 53 0 1797 166 54 27 chr6 67203724 67204097 -122075457 + L1MD1 LINE L1 5562 5944 -298 1133 218 0 0 chr6 67204101 67204335 -122075219 + L1MD1 LINE L1 6009 6242 0 449 330 37 5 chr6 67204385 67204576 -122074978 + MIR SINE MIR 5 201 -61 315 49 0 0 chr6 67204583 67204624 -122074930 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1300 227 93 39 chr6 67205047 67205488 -122074066 + MLT1C LTR MaLR 3 467 0 24 0 0 0 chr6 67206595 67206619 -122072935 + AT_rich Low_complexity Low_complexity 1 24 0 301 360 106 26 chr6 67206658 67206922 -122072632 + L3 LINE CR1 597 881 -696 228 294 59 12 chr6 67206935 67207020 -122072534 + L3b LINE CR1 1177 1265 -318 370 358 7 0 chr6 67207058 67207209 -122072345 + MIR SINE MIR 41 192 -70 1820 144 20 26 chr6 67207684 67207990 -122071564 - AluSx SINE Alu -8 304 1 182 316 213 22 chr6 67208013 67208149 -122071405 - MIR3 SINE MIR -30 178 17 401 316 24 34 chr6 67208351 67208560 -122070994 + PABL_B LTR ERV1 1 207 -460 1037 245 51 35 chr6 67208568 67208882 -122070672 + PABL_B LTR ERV1 349 667 0 1552 187 44 7 chr6 67209018 67209312 -122070242 - AluJb SINE Alu -7 305 1 616 126 0 0 chr6 67209513 67209600 -122069954 + AluS SINE Alu 1 87 -225 1122 240 26 34 chr6 67209749 67210132 -122069422 - L1M4 LINE L1 -1110 5036 4657 388 283 73 57 chr6 67210140 67210317 -122069237 - MER21B LTR ERV1 -373 490 311 227 209 30 30 chr6 67210400 67210467 -122069087 + L1ME4a LINE L1 5838 5904 -217 243 0 0 0 chr6 67210514 67210541 -122069013 + (CA)n Simple_repeat Simple_repeat 2 28 0 260 222 61 30 chr6 67210547 67210646 -122068908 + L1ME4a LINE L1 6003 6104 -17 334 313 36 0 chr6 67211022 67211105 -122068449 + L2 LINE L2 3137 3222 -50 22 0 0 0 chr6 67211191 67211213 -122068341 + AT_rich Low_complexity Low_complexity 1 22 0 2072 110 0 3 chr6 67211225 67211507 -122068047 + AluSg SINE Alu 1 281 -29 484 317 134 34 chr6 67212448 67212929 -122066625 + L2 LINE L2 2149 3251 -62 27 0 0 0 chr6 67213644 67213671 -122065883 + AT_rich Low_complexity Low_complexity 1 27 0 911 310 111 8 chr6 67215258 67215726 -122063828 + Tigger8 DNA MER2_type 2 517 -149 10765 134 15 9 chr6 67215821 67217537 -122062017 - Tigger1 DNA MER2_type -1 2417 691 734 82 107 25 chr6 67217537 67217659 -122061895 + MER30 DNA MER1_type 1 132 -98 431 236 0 0 chr6 67217762 67217834 -122061720 + MER30 DNA MER1_type 159 230 0 3879 154 53 0 chr6 67217837 67218493 -122061061 - Tigger1 DNA MER2_type -1726 692 2 2091 110 0 14 chr6 67218580 67218714 -122060840 + AluSg SINE Alu 1 135 -175 2726 23 0 0 chr6 67218714 67219021 -122060533 + AluYa5 SINE Alu 1 307 -4 2091 110 0 14 chr6 67219021 67219178 -122060376 + AluSg SINE Alu 135 288 -22 444 97 0 0 chr6 67219305 67219367 -122060187 - Alu SINE Alu -251 62 1 1808 234 148 50 chr6 67219377 67219619 -122059935 - L1MDb LINE L1 -830 5576 5359 2081 121 3 35 chr6 67219619 67219755 -122059799 + AluSx SINE Alu 1 140 -172 2269 106 0 0 chr6 67219755 67220058 -122059496 + AluSc SINE Alu 3 305 -4 2081 121 3 35 chr6 67220058 67220235 -122059319 + AluSx SINE Alu 140 304 -8 1808 234 148 50 chr6 67220235 67220507 -122059047 - L1MDb LINE L1 -1047 5359 5115 2592 37 0 0 chr6 67220507 67220803 -122058751 - AluY SINE Alu -15 296 1 1808 234 148 50 chr6 67220803 67221410 -122058144 - L1MDb LINE L1 -1291 5115 4344 2276 43 0 0 chr6 67221417 67221719 -122057835 + L1PA4 LINE L1 5861 6162 0 817 281 69 29 chr6 67221775 67222888 -122056666 - L1MDb LINE L1 -2251 4155 2947 819 185 25 167 chr6 67222888 67223164 -122056390 - MER8 DNA MER2_type -1 238 2 817 281 69 29 chr6 67223164 67223203 -122056351 - L1MDb LINE L1 -3459 2947 2911 308 252 111 40 chr6 67223550 67223766 -122055788 - L1MDb LINE L1 -3841 2565 2342 23 0 0 0 chr6 67223827 67223850 -122055704 + AT_rich Low_complexity Low_complexity 1 23 0 536 288 53 50 chr6 67224067 67224887 -122054667 - L1MDb LINE L1 -4607 1980 1119 929 144 30 99 chr6 67225177 67225379 -122054175 + MER2 DNA MER2_type 18 205 -140 788 175 0 29 chr6 67227551 67227688 -122051866 - FLAM_C SINE Alu 0 133 1 2569 77 20 0 chr6 67227998 67228349 -122051205 - L1PA13 LINE L1 0 6163 5806 214 106 43 0 chr6 67228414 67228461 -122051093 + (TA)n Simple_repeat Simple_repeat 2 50 0 1368 235 128 7 chr6 67228487 67228982 -122050572 + MLT1F LTR MaLR 1 542 0 211 278 0 0 chr6 67229393 67229465 -122050089 + (TA)n Simple_repeat Simple_repeat 1 72 0 320 289 58 62 chr6 67230283 67230491 -122049063 + L3 LINE CR1 553 759 -818 419 197 0 0 chr6 67230561 67230637 -122048917 + MIR SINE MIR 1 76 -186 366 312 136 0 chr6 67230686 67230840 -122048714 - MIR SINE MIR -71 191 17 1011 99 0 0 chr6 67231472 67231613 -122047941 - AluSg/x SINE Alu -12 300 160 2002 121 0 20 chr6 67231614 67231920 -122047634 - AluSg SINE Alu -9 301 2 23 33 0 0 chr6 67232424 67232454 -122047100 + AT_rich Low_complexity Low_complexity 1 30 0 443 344 22 70 chr6 67234238 67234596 -122044958 + L2 LINE L2 2293 2633 -681 182 415 34 43 chr6 67234651 67234858 -122044696 + L2 LINE L2 3031 3235 -37 1404 199 75 23 chr6 67235194 67235541 -122044013 - MLT1A1 LTR MaLR 0 365 1 24 53 0 0 chr6 67236228 67236266 -122043288 + AT_rich Low_complexity Low_complexity 1 38 0 442 181 0 0 chr6 67238001 67238084 -122041470 - FLAM_A SINE Alu -59 83 1 319 309 89 53 chr6 67238887 67239324 -122040230 - L1MC/D LINE L1 -2004 5804 5352 222 282 13 26 chr6 67240608 67240686 -122038868 + GA-rich Low_complexity Low_complexity 2 78 0 1277 144 32 8 chr6 67241101 67241351 -122038203 - L1MA7 LINE L1 -10 6281 6026 21 82 0 0 chr6 67242065 67242114 -122037440 + AT_rich Low_complexity Low_complexity 1 49 0 2029 128 3 0 chr6 67242119 67242415 -122037139 - AluSx SINE Alu -15 297 1 277 277 0 84 chr6 67243381 67243464 -122036090 - L3 LINE CR1 -7 1570 1495 36 40 0 0 chr6 67244231 67244281 -122035273 + AT_rich Low_complexity Low_complexity 1 50 0 262 259 67 140 chr6 67244621 67244814 -122034740 + MIR SINE MIR 5 183 -79 570 76 13 0 chr6 67245097 67245176 -122034378 + MADE1 DNA Mariner 1 80 0 190 413 39 32 chr6 67245493 67245648 -122033906 - L2 LINE L2 -180 3092 2937 344 263 31 62 chr6 67246123 67246283 -122033271 + LTR33 LTR ERVL 10 164 -357 312 231 8 100 chr6 67246369 67246499 -122033055 + LTR33 LTR ERVL 402 519 -2 267 31 0 0 chr6 67246872 67246904 -122032650 + (TG)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr6 67247176 67247205 -122032349 + AT_rich Low_complexity Low_complexity 1 29 0 24 77 0 0 chr6 67248266 67248318 -122031236 + AT_rich Low_complexity Low_complexity 1 52 0 499 313 73 0 chr6 67249062 67249254 -122030300 - MIR SINE MIR -4 258 53 798 209 70 70 chr6 67249493 67249866 -122029688 - L1MC5 LINE L1 -111 7850 7478 198 208 0 0 chr6 67250864 67250912 -122028642 + (TGGA)n Simple_repeat Simple_repeat 4 51 0 2884 6 0 0 chr6 67251256 67251573 -122027981 + AluYb8 SINE Alu 1 317 -1 22 0 0 0 chr6 67253186 67253208 -122026346 + AT_rich Low_complexity Low_complexity 1 22 0 299 220 64 18 chr6 67253691 67253800 -122025754 + L1MC4 LINE L1 7928 8041 -1 2681 96 5 3 chr6 67254101 67254475 -122025079 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr6 67257989 67258014 -122021540 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr6 67258106 67258134 -122021420 + AT_rich Low_complexity Low_complexity 1 28 0 228 245 43 64 chr6 67258572 67258666 -122020888 + L2 LINE L2 575 666 -2648 370 235 96 0 chr6 67258746 67258861 -122020693 - L1MC5 LINE L1 -30 7931 7806 2194 278 32 62 chr6 67258956 67259777 -122019777 + L2 LINE L2 905 1700 -1614 966 147 117 5 chr6 67259779 67259920 -122019634 - L1MA6 LINE L1 -360 5940 5769 303 28 0 0 chr6 67259920 67259956 -122019598 + (CA)n Simple_repeat Simple_repeat 2 37 0 966 147 117 5 chr6 67259956 67260011 -122019543 - L1MA6 LINE L1 -531 5769 5722 548 280 91 33 chr6 67260051 67260405 -122019149 + L2 LINE L2 1696 2136 -1178 1039 287 103 32 chr6 67260410 67261162 -122018392 + L2 LINE L2 2451 3284 -29 1213 195 25 13 chr6 67261346 67261582 -122017972 - MER8 DNA MER2_type 0 239 1 22 0 0 0 chr6 67261997 67262019 -122017535 + AT_rich Low_complexity Low_complexity 1 22 0 2021 110 3 10 chr6 67262465 67262764 -122016790 - AluSg SINE Alu -13 297 1 207 0 0 0 chr6 67263460 67263483 -122016071 + (A)n Simple_repeat Simple_repeat 1 23 0 504 319 37 6 chr6 67263483 67263646 -122015908 + MIR3 SINE MIR 19 186 -22 476 274 40 0 chr6 67264105 67264229 -122015325 + MIR SINE MIR 85 213 -49 24 32 0 0 chr6 67264838 67264869 -122014685 + AT_rich Low_complexity Low_complexity 1 31 0 544 271 146 38 chr6 67265577 67266030 -122013524 - HAL1 LINE L1 -19 2488 1987 24 0 0 0 chr6 67266258 67266282 -122013272 + AT_rich Low_complexity Low_complexity 1 24 0 359 287 98 12 chr6 67266304 67266468 -122013086 - HAL1 LINE L1 -910 1597 1420 231 174 29 14 chr6 67266466 67266535 -122013019 - L1 LINE L1 -3047 3335 3266 * 288 180 22 34 chr6 67266544 67266633 -122012921 - L1MA4A LINE L1 -7 6296 6209 3874 234 75 51 chr6 67266633 67267739 -122011815 - L1 LINE L1 -3100 3282 2204 2254 112 0 3 chr6 67267739 67268043 -122011511 - AluSq SINE Alu -10 303 1 3874 234 75 51 chr6 67268043 67269429 -122010125 - L1 LINE L1 -4178 2204 795 481 298 115 77 chr6 67270027 67270715 -122008839 - HAL1 LINE L1 -1651 856 143 599 316 216 25 chr6 67270897 67271803 -122007751 - L2 LINE L2 0 3313 2232 180 349 24 12 chr6 67273353 67273436 -122006118 - MIR3 SINE MIR -10 198 115 5705 157 18 3 chr6 67273615 67275179 -122004375 - L1PB2 LINE L1 0 6151 4567 25 0 0 0 chr6 67278211 67278236 -122001318 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr6 67278282 67278306 -122001248 + AT_rich Low_complexity Low_complexity 1 24 0 2240 84 0 0 chr6 67278636 67278911 -122000643 - AluSg SINE Alu -14 296 22 25 75 0 0 chr6 67279280 67279333 -122000221 + AT_rich Low_complexity Low_complexity 1 53 0 518 155 10 10 chr6 67280631 67280728 -121998826 - FLAM_A SINE Alu -14 128 32 1849 145 34 3 chr6 67281125 67281422 -121998132 - AluSx SINE Alu -6 306 1 23 0 0 0 chr6 67282146 67282169 -121997385 + AT_rich Low_complexity Low_complexity 1 23 0 204 308 87 29 chr6 67282241 67282345 -121997209 + L2 LINE L2 3193 3302 -11 1155 115 0 0 chr6 67282955 67283112 -121996442 + AluSg/x SINE Alu 136 292 -20 180 263 0 0 chr6 67283666 67283704 -121995850 + L2 LINE L2 3219 3256 -16 2244 115 3 3 chr6 67284836 67285148 -121994406 - AluSp SINE Alu -1 312 1 22 0 0 0 chr6 67285468 67285490 -121994064 + AT_rich Low_complexity Low_complexity 1 22 0 349 259 99 19 chr6 67286455 67286617 -121992937 - MER112 DNA MER1_type -48 212 38 2117 114 50 34 chr6 67286712 67287070 -121992484 + THE1B LTR MaLR 1 364 0 338 216 194 0 chr6 67287120 67287254 -121992300 - L1MC5 LINE L1 -173 7788 7629 1726 126 79 0 chr6 67287846 67288100 -121991454 + AluSg1 SINE Alu 7 280 -29 206 330 108 77 chr6 67288365 67288874 -121990680 - L2 LINE L2 -639 2675 2151 960 212 17 6 chr6 67290430 67290609 -121988945 - MER5A DNA MER1_type 0 189 9 342 0 0 0 chr6 67290884 67290922 -121988632 + (CA)n Simple_repeat Simple_repeat 2 39 0 1511 159 37 33 chr6 67291539 67291810 -121987744 - AluJo SINE Alu -35 277 6 442 371 59 5 chr6 67292275 67292496 -121987058 - MIR SINE MIR 0 262 30 287 258 125 39 chr6 67294574 67294702 -121984852 + MIR SINE MIR 1 139 -123 1583 211 9 36 chr6 67294704 67294999 -121984555 - MER58B DNA MER1_type -2082 338 52 2391 63 7 0 chr6 67294999 67295300 -121984254 + AluY SINE Alu 1 303 -8 1583 211 9 36 chr6 67295300 67295341 -121984213 - MER58B DNA MER1_type -2368 52 11 246 291 12 0 chr6 67295348 67295434 -121984120 + MIR SINE MIR 128 214 -48 544 227 7 21 chr6 67297020 67297161 -121982393 + MER69 DNA AcHobo 2149 2287 -239 42471 35 22 1 chr6 67297161 67303216 -121976338 + L1PA3 LINE L1 8 6189 0 410 270 94 17 chr6 67303241 67303474 -121976080 + MER69 DNA AcHobo 2264 2514 -12 282 319 65 7 chr6 67303762 67303900 -121975654 + MIR SINE MIR 107 252 -10 310 303 32 64 chr6 67304129 67304317 -121975237 + MARNA DNA Mariner 391 572 -14 591 88 0 0 chr6 67304778 67304858 -121974696 - MADE1 DNA Mariner 0 80 1 33 25 0 0 chr6 67305569 67305609 -121973945 + AT_rich Low_complexity Low_complexity 1 40 0 990 170 0 0 chr6 67307810 67307969 -121971585 + FRAM SINE Alu 5 163 -3 1328 207 47 92 chr6 67310810 67311298 -121968256 + MLT1C LTR MaLR 2 467 0 22 0 0 0 chr6 67311453 67311475 -121968079 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 67311576 67311597 -121967957 + AT_rich Low_complexity Low_complexity 1 21 0 277 266 122 7 chr6 67311606 67311745 -121967809 - L1ME LINE L1 -255 5866 5712 230 300 30 35 chr6 67313073 67313273 -121966281 + L1MEd LINE L1 939 1137 -4982 396 328 98 44 chr6 67313303 67313760 -121965794 + HAL1 LINE L1 1284 1765 -742 288 0 0 0 chr6 67314233 67314265 -121965289 + (TG)n Simple_repeat Simple_repeat 2 33 0 743 234 0 0 chr6 67314272 67314409 -121965145 + MER82 DNA MER2_type 2 138 -515 3894 134 17 129 chr6 67314794 67316346 -121963208 + pTR5 LTR ERV1 741 2606 0 1797 237 53 11 chr6 67316419 67316853 -121962701 + MER82 DNA MER2_type 201 652 -1 225 65 0 0 chr6 67316854 67316885 -121962669 + (TG)n Simple_repeat Simple_repeat 1 31 0 189 0 0 0 chr6 67317073 67317094 -121962460 + (T)n Simple_repeat Simple_repeat 1 21 0 2203 93 10 0 chr6 67317325 67317636 -121961918 + L1PA14 LINE L1 5846 6159 -2 2419 172 16 12 chr6 67317728 67318152 -121961402 - MSTB LTR MaLR 0 426 1 338 305 54 42 chr6 67318914 67319081 -121960473 + MIR SINE MIR 5 173 -89 197 383 53 0 chr6 67319093 67319124 -121960430 + L2 LINE L2 3189 3217 -96 213 39 0 0 chr6 67319124 67319150 -121960404 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 197 383 53 0 chr6 67319150 67319212 -121960342 + L2 LINE L2 3217 3287 -26 237 108 0 0 chr6 67319214 67319251 -121960303 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 346 279 116 0 chr6 67319271 67319400 -121960154 - MIR SINE MIR -24 238 95 2532 118 5 8 chr6 67319765 67320139 -121959415 - THE1C LTR MaLR 0 375 3 487 189 22 0 chr6 67320196 67320286 -121959268 - Tigger7 DNA MER2_type -8 2479 2388 * 1149 226 49 49 chr6 67320285 67320550 -121959004 - Tigger7 DNA MER2_type -2221 266 2 439 299 32 19 chr6 67320552 67320709 -121958845 + MLT1J LTR MaLR 83 241 -270 358 335 106 28 chr6 67321084 67321302 -121958252 - MIR SINE MIR -3 259 25 958 224 5 10 chr6 67321655 67321851 -121957703 + Tigger3b DNA MER2_type 12 206 -1025 490 211 0 0 chr6 67321861 67321988 -121957566 - ALR/Alpha Satellite centromeric 0 127 1 2269 114 23 8 chr6 67322015 67322366 -121957188 + Tigger3b DNA MER2_type 205 560 -671 604 217 129 95 chr6 67322769 67323032 -121956522 + L1PBb LINE L1 794 1065 -5784 1094 290 24 68 chr6 67323182 67323736 -121955818 + L1PBb LINE L1 999 1610 -5238 5173 243 29 13 chr6 67323749 67325939 -121953615 + L1PBb LINE L1 1678 3910 -2938 2182 126 0 0 chr6 67325939 67326240 -121953314 + AluSg SINE Alu 1 301 -9 5173 243 29 13 chr6 67326240 67326274 -121953280 + L1PBb LINE L1 3910 3942 -2906 37 0 0 0 chr6 67326277 67326314 -121953240 + AT_rich Low_complexity Low_complexity 1 37 0 2887 166 60 17 chr6 67326314 67326915 -121952639 + Tigger3b DNA MER2_type 606 1232 0 682 234 47 47 chr6 67327360 67327428 -121952126 - MLT1A2 LTR MaLR -141 233 166 321 26 0 0 chr6 67327428 67327466 -121952088 + (GA)n Simple_repeat Simple_repeat 1 38 0 682 234 47 47 chr6 67327466 67327611 -121951943 - MLT1A2 LTR MaLR -207 167 20 473 257 7 50 chr6 67328227 67328367 -121951187 + LTR16C LTR ERVL 260 393 -98 2013 135 0 3 chr6 67328505 67328808 -121950746 - AluSg SINE Alu -8 302 1 2321 99 0 0 chr6 67329292 67329595 -121949959 - AluY SINE Alu -8 303 1 27 49 0 0 chr6 67330910 67330951 -121948603 + AT_rich Low_complexity Low_complexity 1 41 0 196 193 18 105 chr6 67432443 67432500 -121847054 - L2 LINE L2 -3 3269 3218 21 0 0 0 chr6 67433103 67433124 -121846430 + AT_rich Low_complexity Low_complexity 1 21 0 2125 105 0 3 chr6 67434457 67434751 -121844803 + AluSg SINE Alu 2 294 -16 184 324 59 0 chr6 67434794 67434862 -121844692 - L2 LINE L2 -4 3309 3238 26 0 0 0 chr6 67435342 67435368 -121844186 + AT_rich Low_complexity Low_complexity 1 26 0 23 68 0 0 chr6 67435401 67435445 -121844109 + AT_rich Low_complexity Low_complexity 1 44 0 1230 90 5 5 chr6 67436891 67437080 -121842474 + L1PB1 LINE L1 5260 5448 -703 936 143 19 6 chr6 67437080 67437241 -121842313 - AluSg/x SINE Alu -1 311 149 4624 101 26 3 chr6 67437258 67437953 -121841601 + L1PB1 LINE L1 5440 6150 -1 397 77 89 24 chr6 67437995 67438163 -121841391 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 30 0 0 chr6 67438163 67438196 -121841358 + AT_rich Low_complexity Low_complexity 1 33 0 296 99 76 35 chr6 67438198 67438370 -121841184 + (TA)n Simple_repeat Simple_repeat 2 180 0 198 0 0 0 chr6 67438450 67438472 -121841082 + (TA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr6 67438607 67438629 -121840925 + AT_rich Low_complexity Low_complexity 1 22 0 184 224 164 0 chr6 67438885 67438952 -121840602 - L2 LINE L2 -62 3251 3174 252 228 0 18 chr6 67440928 67440985 -121838569 - MLT1I-int LTR MaLR -1309 62 7 571 283 92 41 chr6 67440991 67441305 -121838249 - MLT1I LTR MaLR 0 409 80 451 313 84 40 chr6 67441393 67441564 -121837990 + MIR SINE MIR 1 188 -74 1218 72 106 11 chr6 67441564 67441708 -121837846 + MER107 DNA MER1_type 1 167 -30 180 0 0 0 chr6 67441708 67441728 -121837826 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1218 72 106 11 chr6 67441728 67441763 -121837791 + MER107 DNA MER1_type 167 197 0 451 313 84 40 chr6 67441763 67441840 -121837714 + MIR SINE MIR 188 260 -2 23 0 0 0 chr6 67442565 67442588 -121836966 + AT_rich Low_complexity Low_complexity 1 23 0 225 308 0 0 chr6 67443283 67443335 -121836219 - L2 LINE L2 -17 3255 3204 1849 253 40 54 chr6 67443572 67444493 -121835061 + L1MEc LINE L1 1765 2648 -3567 2298 94 7 0 chr6 67444493 67444802 -121834752 + AluY SINE Alu 1 311 0 1849 253 40 54 chr6 67444802 67444941 -121834613 + L1MEc LINE L1 2648 2787 -3428 1139 215 15 69 chr6 67444949 67445339 -121834215 + L1MEc LINE L1 4135 4503 -1712 1614 181 3 20 chr6 67445361 67445659 -121833895 + AluSx SINE Alu 3 295 -17 1703 194 17 6 chr6 67446173 67446528 -121833026 + MER46B DNA MER2_type 1 234 -2 4167 207 40 10 chr6 67446530 67448233 -121831321 + L1MB7 LINE L1 4508 6253 0 22 0 0 0 chr6 67448253 67448275 -121831279 + AT_rich Low_complexity Low_complexity 1 22 0 234 365 81 46 chr6 67449091 67449486 -121830068 + L2 LINE L2 1696 2104 -1210 809 240 31 72 chr6 67449608 67449929 -121829625 - L1M4 LINE L1 -1391 4755 4448 380 127 32 32 chr6 67449929 67450086 -121829468 + (TA)n Simple_repeat Simple_repeat 2 158 0 805 218 111 8 chr6 67450136 67450388 -121829166 - L1M4 LINE L1 -1778 4368 4091 725 314 33 8 chr6 67450388 67450748 -121828806 - L1M4 LINE L1 -2299 3847 3479 1805 90 4 12 chr6 67451349 67451593 -121827961 - AluSp SINE Alu -13 300 59 275 0 0 28 chr6 67454468 67454504 -121825050 + (TTA)n Simple_repeat Simple_repeat 2 36 0 396 0 0 0 chr6 67455264 67455308 -121824246 + (CA)n Simple_repeat Simple_repeat 2 45 0 184 136 91 23 chr6 67456239 67456283 -121823271 + L3b LINE CR1 1223 1269 -314 21 0 0 0 chr6 67458694 67458715 -121820839 + AT_rich Low_complexity Low_complexity 1 21 0 235 244 144 22 chr6 67458986 67459076 -121820478 - L2 LINE L2 -47 3225 3125 219 250 19 0 chr6 67459959 67460011 -121819543 + GA-rich Low_complexity Low_complexity 2 54 0 759 234 33 5 chr6 67460072 67460256 -121819298 + MER5A DNA MER1_type 1 189 0 22 35 0 0 chr6 67463185 67463214 -121816340 + AT_rich Low_complexity Low_complexity 1 29 0 340 294 0 40 chr6 67464207 67464333 -121815221 + L2 LINE L2 3193 3313 0 29 28 0 0 chr6 67465431 67465467 -121814087 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 67465598 67465620 -121813934 + AT_rich Low_complexity Low_complexity 1 22 0 2033 130 3 22 chr6 67465876 67466192 -121813362 + AluSx SINE Alu 1 310 -2 4799 80 89 3 chr6 67466702 67467412 -121812142 + L1PA7 LINE L1 5384 6154 0 22 56 0 0 chr6 67467801 67467837 -121811717 + AT_rich Low_complexity Low_complexity 1 36 0 2377 162 21 7 chr6 67468093 67468513 -121811041 - MSTB LTR MaLR 0 426 1 236 270 100 50 chr6 67468548 67468648 -121810906 - MER5A DNA MER1_type -22 167 63 198 348 0 0 chr6 67468631 67468677 -121810877 - MER5B DNA MER1_type -75 103 58 * 2106 125 0 3 chr6 67469411 67469716 -121809838 + AluSg SINE Alu 1 304 -6 2342 75 0 28 chr6 67470115 67470435 -121809119 + AluY SINE Alu 1 311 0 6256 48 1 9 chr6 67470467 67471256 -121808298 + L1PA7 LINE L1 5371 6153 -1 4905 176 28 95 chr6 67471684 67473277 -121806277 - L1PB4 LINE L1 0 6156 4734 1297 44 0 0 chr6 67473277 67473432 -121806122 + L1PA5 LINE L1 5995 6154 0 4905 176 28 95 chr6 67473432 67473786 -121805768 - L1PB4 LINE L1 -1422 4734 4358 233 138 103 69 chr6 67474112 67474170 -121805384 + L2 LINE L2 3254 3313 0 2303 87 0 3 chr6 67474195 67474495 -121805059 - AluY SINE Alu -12 299 1 230 310 60 26 chr6 67474561 67474677 -121804877 - L2 LINE L2 -27 3286 3167 394 296 55 69 chr6 67476178 67476469 -121803085 - MLT1J LTR MaLR -2 509 223 310 311 111 21 chr6 67476809 67476999 -121802555 + L1M4 LINE L1 2205 2411 -3735 418 298 34 39 chr6 67477347 67477555 -121801999 + MIR SINE MIR 49 255 -7 34 55 0 0 chr6 67477743 67477798 -121801756 + AT_rich Low_complexity Low_complexity 1 55 0 1597 189 48 21 chr6 67478097 67478431 -121801123 + MER2 DNA MER2_type 1 343 -1 927 283 39 41 chr6 67478654 67479243 -121800311 + MLT1H1 LTR MaLR 1 544 -11 518 228 0 41 chr6 67479658 67479781 -121799773 + FLAM_C SINE Alu 3 120 -13 24 77 0 0 chr6 67479781 67479833 -121799721 + AT_rich Low_complexity Low_complexity 1 52 0 926 281 97 9 chr6 67480071 67480402 -121799152 + L2 LINE L2 1711 2070 -1244 864 321 110 25 chr6 67480447 67481023 -121798531 + L2 LINE L2 2615 3251 -62 2021 187 26 19 chr6 67481023 67481446 -121798108 + MSTB LTR MaLR 1 426 0 864 321 110 25 chr6 67481446 67481515 -121798039 + L2 LINE L2 3251 3313 0 354 328 97 21 chr6 67481523 67481761 -121797793 + L1ME4a LINE L1 5765 6020 -101 24 67 0 0 chr6 67481769 67481814 -121797740 + AT_rich Low_complexity Low_complexity 1 45 0 2575 122 15 0 chr6 67481853 67482246 -121797308 - L1PA11 LINE L1 0 6174 5776 5158 188 14 11 chr6 67482961 67484170 -121795384 - L1MA7 LINE L1 0 7710 6500 * 28323 42 1 2 chr6 67484167 67487679 -121791875 - L1PA3 LINE L1 -2283 3863 356 12566 41 3 0 chr6 67487679 67490022 -121789532 + L1PA3 LINE L1 3857 6203 0 10745 224 38 51 chr6 67490022 67490693 -121788861 - L1MA7 LINE L1 -1053 6512 5834 387 41 0 0 chr6 67490693 67490742 -121788812 + (TG)n Simple_repeat Simple_repeat 1 49 0 10745 224 38 51 chr6 67490742 67490818 -121788736 - L1MA7 LINE L1 -1731 5834 5759 252 0 0 0 chr6 67490818 67490846 -121788708 + (TG)n Simple_repeat Simple_repeat 2 29 0 10745 224 38 51 chr6 67490846 67491459 -121788095 - L1MA7 LINE L1 -1806 5759 5140 1613 154 7 0 chr6 67491459 67491744 -121787810 - L1MA3 LINE L1 0 6305 6019 10745 224 38 51 chr6 67491744 67491910 -121787644 - L1MA7 LINE L1 -2425 5140 4973 1977 55 0 4 chr6 67491910 67492165 -121787389 - L1PA4 LINE L1 0 6155 5902 10745 224 38 51 chr6 67492165 67494531 -121785023 - L1MA7 LINE L1 -2592 4973 2663 1524 215 36 49 chr6 67494528 67494918 -121784636 - L1PA16 LINE L1 -1 6165 5781 * 6390 246 28 35 chr6 67494898 67496955 -121782599 - L1M3de LINE L1 -1098 2137 2 2096 142 0 0 chr6 67497072 67497375 -121782179 - AluSx SINE Alu -9 303 1 354 221 80 61 chr6 67497375 67497528 -121782026 - L1MA7 LINE L1 -5732 1754 1596 2229 89 16 22 chr6 67497602 67498012 -121781542 - AluSq SINE Alu 0 408 1 861 237 41 27 chr6 67500834 67501129 -121778425 + Charlie4a DNA MER1_type 155 453 -55 383 352 82 19 chr6 67501623 67501941 -121777613 + MLT1K LTR MaLR 214 551 -37 24 0 0 0 chr6 67503962 67503986 -121775568 + AT_rich Low_complexity Low_complexity 1 24 0 239 356 76 23 chr6 67506034 67506166 -121773388 - L2 LINE L2 -11 3261 3123 271 378 127 27 chr6 67506793 67507354 -121772200 - L2 LINE L2 -980 2334 1718 2267 96 0 13 chr6 67508177 67508490 -121771064 - AluSc SINE Alu 0 309 1 246 149 15 60 chr6 67508584 67508651 -121770903 + A-rich Low_complexity Low_complexity 1 64 0 209 105 132 0 chr6 67509070 67509108 -121770446 - L2 LINE L2 -4 3309 3267 347 102 0 0 chr6 67509849 67509908 -121769646 - L1MA1 LINE L1 -7 6295 6237 539 308 52 9 chr6 67510238 67510449 -121769105 + Charlie2 DNA MER1_type 27 246 -2536 3397 231 109 100 chr6 67510505 67511664 -121767890 - L1ME1 LINE L1 -207 5959 4813 387 0 0 0 chr6 67511664 67511707 -121767847 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 3397 231 109 100 chr6 67511707 67511726 -121767828 - L1ME1 LINE L1 -1353 4813 4796 1673 182 3 0 chr6 67511726 67512012 -121767542 - AluSx SINE Alu -25 287 1 3397 231 109 100 chr6 67512012 67513873 -121765681 - L1ME1 LINE L1 -1370 4796 2871 1902 140 3 0 chr6 67513873 67514158 -121765396 - AluSx SINE Alu -26 286 1 3397 231 109 100 chr6 67514158 67514265 -121765289 - L1ME1 LINE L1 -3295 2871 2767 315 353 101 58 chr6 67514657 67515537 -121764017 - L2 LINE L2 -556 2758 1841 187 326 0 0 chr6 67516130 67516176 -121763378 + L2 LINE L2 3210 3255 -17 40977 66 2 4 chr6 67516316 67522473 -121757081 + L1PA5 LINE L1 11 6154 0 253 311 28 0 chr6 67522480 67522586 -121756968 + L1M4 LINE L1 2722 2830 -3316 202 356 101 36 chr6 67523030 67523524 -121756030 - L2 LINE L2 -2432 882 357 * 236 343 38 0 chr6 67523515 67523620 -121755934 + L2 LINE L2 2013 2121 -1193 231 36 0 0 chr6 67524006 67524034 -121755520 + (TG)n Simple_repeat Simple_repeat 2 29 0 824 233 41 92 chr6 67524197 67524587 -121754967 - MLT1A2 LTR MaLR -4 370 1 239 339 169 0 chr6 67525208 67525326 -121754228 + L2 LINE L2 3129 3266 -6 1326 170 55 84 chr6 67526161 67526472 -121753082 + AluJo SINE Alu 1 302 -10 21 0 0 0 chr6 67527592 67527613 -121751941 + AT_rich Low_complexity Low_complexity 1 21 0 4355 118 53 1 chr6 67527810 67528489 -121751065 - LTR62 LTR ERVK -5 714 1 269 275 275 0 chr6 67528602 67528711 -121750843 - L2 LINE L2 0 3272 3134 188 302 143 74 chr6 67528770 67528959 -121750595 - L2 LINE L2 -337 2977 2776 381 179 10 122 chr6 67529432 67529628 -121749926 + MER104 DNA MER2_type 5 178 -2 28 48 0 0 chr6 67530759 67530801 -121748753 + AT_rich Low_complexity Low_complexity 1 42 0 1006 155 0 12 chr6 67530974 67531135 -121748419 + L1PA8A LINE L1 5973 6131 0 260 243 54 0 chr6 67531147 67531221 -121748333 - L1ME LINE L1 -303 5818 5741 9833 187 39 14 chr6 67531224 67533452 -121746102 - L1 LINE L1 -1724 4658 2375 23 0 0 0 chr6 67533476 67533499 -121746055 + AT_rich Low_complexity Low_complexity 1 23 0 23 78 0 0 chr6 67533781 67533832 -121745722 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr6 67533851 67533873 -121745681 + AT_rich Low_complexity Low_complexity 1 22 0 353 22 22 0 chr6 67534927 67534973 -121744581 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 576 188 134 99 chr6 67535198 67535421 -121744133 - MLT1H LTR MaLR 0 549 319 314 250 0 0 chr6 67536146 67536234 -121743320 + (TA)n Simple_repeat Simple_repeat 2 89 0 1169 217 45 30 chr6 67537037 67537374 -121742180 + MER2 DNA MER2_type 2 343 -1 279 250 14 0 chr6 67537829 67537901 -121741653 + MER112 DNA MER1_type 181 253 -7 198 0 0 0 chr6 67538063 67538085 -121741469 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 421 222 17 17 chr6 67538608 67538838 -121740716 + GA-rich Low_complexity Low_complexity 1 230 0 42723 36 21 1 chr6 67539205 67545236 -121734318 - L1PA2 LINE L1 0 6155 3 279 314 104 20 chr6 67545235 67545464 -121734090 - L1MC/D LINE L1 -385 5785 5584 * 29 28 0 0 chr6 67545509 67545545 -121734009 + AT_rich Low_complexity Low_complexity 1 36 0 38 22 0 0 chr6 67545912 67545957 -121733597 + AT_rich Low_complexity Low_complexity 1 45 0 323 248 262 7 chr6 67546120 67546269 -121733285 - L1ME3A LINE L1 -219 5951 5765 271 309 134 0 chr6 67546379 67546476 -121733078 + MER5B DNA MER1_type 2 111 -67 1036 307 51 16 chr6 67546484 67546797 -121732757 + MER45C DNA AcHobo 2 325 -628 494 327 43 43 chr6 67546824 67547451 -121732103 - L1MC/D LINE L1 -1602 4544 3918 450 347 126 32 chr6 67547649 67548174 -121731380 + L2 LINE L2 1744 2317 -997 561 292 133 51 chr6 67548184 67548574 -121730980 - MLT1J2 LTR MaLR -24 422 1 11597 136 17 89 chr6 67549457 67549502 -121730052 - L1P4 LINE L1 -688 5486 5439 4308 97 10 3 chr6 67549502 67550112 -121729442 - L1PA11 LINE L1 -1 6173 5560 11597 136 17 89 chr6 67550112 67552665 -121726889 - L1P4 LINE L1 -735 5439 3088 411 201 291 37 chr6 67553270 67553459 -121726095 - MLT1J1 LTR MaLR -209 237 1 660 294 112 30 chr6 67554040 67554309 -121725245 - HERVL LTR ERVL -1331 4433 4143 447 264 106 16 chr6 67554412 67554645 -121724909 - HERVL LTR ERVL -1546 3939 3687 270 301 15 38 chr6 67554700 67554833 -121724721 - HERVL LTR ERVL -2161 3324 3195 1574 45 5 0 chr6 67554931 67555129 -121724425 - L1PA14 LINE L1 -4 6157 5959 3630 168 68 3 chr6 67555283 67555343 -121724211 - L1MA8 LINE L1 -3 6288 6233 207 0 0 0 chr6 67555343 67555366 -121724188 + (CA)n Simple_repeat Simple_repeat 2 24 0 3630 168 68 3 chr6 67555366 67556026 -121723528 - L1MA8 LINE L1 -58 6233 5521 509 320 17 29 chr6 67556157 67556329 -121723225 - MER5A DNA MER1_type -3 186 17 215 298 18 0 chr6 67556474 67556531 -121723023 + L2 LINE L2 3238 3295 -18 210 71 0 0 chr6 67556532 67556560 -121722994 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 205 178 0 44 chr6 67557621 67557666 -121721888 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 352 333 111 15 chr6 67558480 67558678 -121720876 + MIR SINE MIR 45 261 -1 593 167 201 21 chr6 67558868 67559012 -121720542 - MER5A DNA MER1_type -10 179 10 1763 131 33 67 chr6 67559113 67559473 -121720081 + MER7A DNA MER2_type 1 346 0 439 243 58 19 chr6 67559529 67559632 -121719922 - MER5A DNA MER1_type -82 107 1 1015 48 0 0 chr6 67559813 67559938 -121719616 + L1PA7 LINE L1 5915 6039 -115 942 51 34 0 chr6 67560038 67560156 -121719398 + L1PA7 LINE L1 6031 6152 -2 21 36 0 0 chr6 67560218 67560246 -121719308 + AT_rich Low_complexity Low_complexity 1 28 0 637 288 68 14 chr6 67561298 67561520 -121718034 - MIR SINE MIR -27 235 2 197 296 98 91 chr6 67561655 67561787 -121717767 + MIR3 SINE MIR 37 169 -39 1429 84 5 20 chr6 67564975 67565177 -121714377 - L1PA13 LINE L1 -11 6152 5954 215 337 72 0 chr6 67565246 67565329 -121714225 + MER5B DNA MER1_type 74 162 -16 247 311 88 26 chr6 67565396 67565589 -121713965 - MIR SINE MIR -55 207 3 598 287 134 4 chr6 67566171 67566425 -121713129 - MLT1I LTR MaLR -17 392 106 2297 75 0 0 chr6 67566485 67566764 -121712790 + AluSg SINE Alu 1 279 -31 411 21 0 0 chr6 67566764 67566812 -121712742 + (CA)n Simple_repeat Simple_repeat 1 48 0 265 338 31 44 chr6 67566891 67567051 -121712503 - MIR3 SINE MIR -41 167 10 338 305 75 70 chr6 67567218 67567357 -121712197 - MIR SINE MIR 0 262 120 1538 184 47 4 chr6 67567357 67567634 -121711920 + AluJo SINE Alu 12 300 -12 338 305 75 70 chr6 67567634 67567707 -121711847 - MIR SINE MIR -142 120 49 1420 105 29 0 chr6 67568554 67568764 -121710790 + L1PA13 LINE L1 5945 6160 -3 200 372 139 14 chr6 67569350 67569565 -121709989 - L2 LINE L2 -238 3075 2834 * 937 336 110 33 chr6 67569553 67570315 -121709239 - L2 LINE L2 -417 2897 2077 353 325 53 12 chr6 67570329 67570498 -121709056 - L2 LINE L2 -1403 1911 1736 221 278 0 28 chr6 67570761 67570833 -121708721 + GA-rich Low_complexity Low_complexity 3 72 0 33 0 0 0 chr6 67571040 67571073 -121708481 + AT_rich Low_complexity Low_complexity 1 33 0 183 80 0 0 chr6 67571659 67571684 -121707870 + (A)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr6 67572586 67572615 -121706939 + AT_rich Low_complexity Low_complexity 1 29 0 1576 187 10 3 chr6 67572754 67573043 -121706511 - AluJo SINE Alu -10 302 12 2949 0 0 0 chr6 67573114 67573428 -121706126 + AluYb8 SINE Alu 1 314 -4 1864 174 8 20 chr6 67573681 67574032 -121705522 + MER7A DNA MER2_type 2 346 0 23 0 0 0 chr6 67575174 67575197 -121704357 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr6 67577058 67577113 -121702441 + AT_rich Low_complexity Low_complexity 1 55 0 414 175 0 0 chr6 67577762 67577842 -121701712 + CT-rich Low_complexity Low_complexity 2 81 0 2220 107 0 10 chr6 67577844 67578152 -121701402 - AluSq SINE Alu -3 310 6 182 370 16 16 chr6 67579539 67579666 -121699888 - L2 LINE L2 -314 2958 2832 200 255 0 0 chr6 67579968 67580015 -121699539 + L2 LINE L2 3267 3313 0 392 256 0 0 chr6 67580191 67580273 -121699281 - L2 LINE L2 0 3313 3232 463 264 161 85 chr6 67580622 67581069 -121698485 + LTR33 LTR ERVL 40 520 -1 28 48 0 0 chr6 67581734 67581776 -121697778 + AT_rich Low_complexity Low_complexity 1 42 0 2425 70 0 13 chr6 67582444 67582746 -121696808 - AluSg SINE Alu -12 298 1 181 322 124 55 chr6 67583000 67583202 -121696352 - MIR SINE MIR -42 220 5 281 265 144 0 chr6 67583351 67583483 -121696071 - MLT1L LTR MaLR -43 572 422 260 222 111 14 chr6 67583609 67583681 -121695873 - MLT1L LTR MaLR -536 79 1 2428 114 40 3 chr6 67584079 67584430 -121695124 + THE1B LTR MaLR 1 364 0 2112 126 0 0 chr6 67585327 67585628 -121693926 - AluSx SINE Alu -11 301 1 2224 100 6 10 chr6 67585766 67586084 -121693470 - AluY SINE Alu 0 318 2 852 333 61 26 chr6 67586270 67586730 -121692824 - L2 LINE L2 -1093 2221 1746 245 236 200 0 chr6 67586743 67586853 -121692701 - L2 LINE L2 -1905 1409 1278 386 245 31 125 chr6 67586876 67587068 -121692486 + MIR SINE MIR 41 214 -48 224 294 245 35 chr6 67587130 67587273 -121692281 - L2 LINE L2 -2074 1240 1068 1458 220 142 70 chr6 67587420 67588096 -121691458 + MER50 LTR ERV1 10 734 0 512 250 59 0 chr6 67588289 67588425 -121691129 + L1MA7 LINE L1 5875 6018 -273 393 313 23 23 chr6 67588433 67588561 -121690993 + MER5B DNA MER1_type 50 177 -1 789 233 33 0 chr6 67588565 67588745 -121690809 + MER5A DNA MER1_type 1 186 -3 345 377 36 39 chr6 67588755 67588995 -121690559 + L2 LINE L2 351 591 -2723 2485 103 46 0 chr6 67588995 67589343 -121690211 - THE1B LTR MaLR 0 364 1 345 377 36 39 chr6 67589343 67589407 -121690147 + L2 LINE L2 591 654 -2660 1067 136 79 13 chr6 67589426 67589654 -121689900 - L1MA8 LINE L1 -20 6271 6029 281 391 94 5 chr6 67589658 67589860 -121689694 - L2 LINE L2 -2962 352 133 249 371 22 0 chr6 67590427 67590516 -121689038 + L2 LINE L2 2579 2669 -645 2133 120 10 0 chr6 67590519 67590818 -121688736 - AluSq SINE Alu -11 302 1 596 283 52 16 chr6 67590927 67591178 -121688376 + MIR SINE MIR 3 262 0 387 370 90 19 chr6 67591210 67591632 -121687922 + L2 LINE L2 2819 3270 -43 21 36 0 0 chr6 67592071 67592099 -121687455 + AT_rich Low_complexity Low_complexity 1 28 0 2305 93 0 10 chr6 67592467 67592769 -121686785 + AluY SINE Alu 1 299 -12 2269 90 7 0 chr6 67594000 67594289 -121685265 + AluSc SINE Alu 1 291 -18 22 0 0 0 chr6 67594748 67594770 -121684784 + AT_rich Low_complexity Low_complexity 1 22 0 854 301 64 21 chr6 67594842 67595124 -121684430 - MLT1I LTR MaLR -10 399 106 358 376 0 20 chr6 67595211 67595417 -121684137 - MIR SINE MIR -42 220 23 185 315 197 16 chr6 67596036 67596163 -121683391 - L2 LINE L2 -8 3264 3115 26 64 0 0 chr6 67596439 67596486 -121683068 + AT_rich Low_complexity Low_complexity 1 47 0 24 0 0 0 chr6 67596510 67596534 -121683020 + AT_rich Low_complexity Low_complexity 1 24 0 931 102 18 96 chr6 67597329 67597496 -121682058 - Tigger1 DNA MER2_type -316 2102 1949 915 92 0 8 chr6 67597497 67597616 -121681938 + AluSq/x SINE Alu 1 118 -194 12374 142 65 24 chr6 67598004 67598473 -121681081 - Tigger1 DNA MER2_type 0 2418 1970 2273 98 3 3 chr6 67598473 67598779 -121680775 + AluSq SINE Alu 1 306 -7 12374 142 65 24 chr6 67598779 67600577 -121678977 - Tigger1 DNA MER2_type -448 1970 51 186 43 0 0 chr6 67600577 67600600 -121678954 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 12374 142 65 24 chr6 67600600 67600653 -121678901 - Tigger1 DNA MER2_type -2367 51 2 297 362 11 21 chr6 67601272 67601460 -121678094 + L2 LINE L2 2850 3035 -237 189 285 177 46 chr6 67601769 67601899 -121677655 + L2 LINE L2 3117 3263 -50 269 273 211 57 chr6 67602060 67602269 -121677285 + MLT1L LTR MaLR 206 446 -169 1082 244 63 58 chr6 67602283 67602665 -121676889 - LTR52 LTR ERVL -3 418 35 209 244 26 103 chr6 67602714 67602792 -121676762 + L2 LINE L2 3241 3312 -1 305 323 46 46 chr6 67603312 67603442 -121676112 + L2 LINE L2 3142 3271 -1 252 411 40 0 chr6 67603869 67603993 -121675561 - L2 LINE L2 -37 3235 3107 344 300 41 49 chr6 67604440 67604707 -121674847 - MARNA DNA Mariner -62 524 260 235 281 35 0 chr6 67604845 67604902 -121674652 + MARNA DNA Mariner 445 503 -83 2243 125 0 0 chr6 67605007 67605318 -121674236 + AluSx SINE Alu 1 311 -1 604 329 8 49 chr6 67606645 67606888 -121672666 - MIR SINE MIR -1 261 29 730 248 12 6 chr6 67607258 67607419 -121672135 - MER5A DNA MER1_type 0 189 28 1830 174 126 5 chr6 67607420 67607800 -121671754 + MSTA LTR MaLR 3 428 0 241 186 0 0 chr6 67607924 67607967 -121671587 - MER5A DNA MER1_type -146 43 1 212 337 5 98 chr6 67607979 67608163 -121671391 - MER5B DNA MER1_type -4 174 8 680 288 146 49 chr6 67608913 67609344 -121670210 - L2 LINE L2 0 3313 2841 280 254 0 30 chr6 67609345 67609408 -121670146 - L2 LINE L2 -962 2352 2292 367 258 199 7 chr6 67609408 67609559 -121669995 - MER5A DNA MER1_type -1 188 9 304 343 134 34 chr6 67613494 67613815 -121665739 - L2 LINE L2 -482 2832 2480 214 213 21 0 chr6 67614180 67614227 -121665327 - L2 LINE L2 -2 3311 3264 613 276 29 11 chr6 67615855 67616029 -121663525 - MIR SINE MIR -15 247 71 369 250 19 29 chr6 67616401 67616505 -121663049 - MER5A DNA MER1_type -51 138 36 198 143 0 0 chr6 67616514 67616549 -121663005 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 274 155 0 0 chr6 67616552 67616619 -121662935 - L1MC3 LINE L1 0 7995 7717 2206 117 10 0 chr6 67716660 67716959 -121562595 - AluSx SINE Alu -10 302 1 4039 141 21 7 chr6 67717149 67717829 -121561725 - L1PA16 LINE L1 -13 6153 5465 605 319 47 0 chr6 67718479 67718670 -121560884 + MIR SINE MIR 34 233 -29 1452 168 58 93 chr6 67718670 67719153 -121560401 + MER31B LTR ERV1 1 466 0 394 227 51 141 chr6 67719222 67719478 -121560076 + MER31B-int LTR ERV1 35 267 -4669 734 211 55 28 chr6 67719515 67719733 -121559821 + MER31B-int LTR ERV1 199 422 -4514 276 340 7 14 chr6 67720171 67720315 -121559239 + MER31B-int LTR ERV1 1230 1372 -5429 2418 88 0 0 chr6 67721773 67722069 -121557485 - AluY SINE Alu -15 296 1 287 349 74 0 chr6 67722114 67722263 -121557291 + MER31B-int LTR ERV1 2549 2708 -4093 414 193 73 0 chr6 67723522 67723631 -121555923 + MER31B-int LTR ERV1 4796 4912 -24 1277 206 42 102 chr6 67723635 67724107 -121555447 + MER31B LTR ERV1 1 444 -22 218 264 0 97 chr6 67724525 67724597 -121554957 + MIR SINE MIR 52 116 -92 258 56 0 0 chr6 67725373 67725409 -121554145 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 293 334 89 16 chr6 67725508 67725640 -121553914 - MIR SINE MIR -66 142 33 5118 27 0 22 chr6 67725654 67726298 -121553256 + L1PA3 LINE L1 5530 6159 0 22 0 0 0 chr6 67726300 67726322 -121553232 + AT_rich Low_complexity Low_complexity 1 22 0 308 272 0 12 chr6 67726982 67727063 -121552491 + L2 LINE L2 3188 3267 -5 1102 203 129 68 chr6 67728071 67728568 -121550986 + MER39 LTR ERV1 2 707 0 479 204 31 0 chr6 67728635 67728733 -121550821 - AluJo SINE Alu -175 137 37 320 291 51 76 chr6 67728872 67729109 -121550445 - L1 LINE L1 -3659 2487 2257 3583 202 80 33 chr6 67729788 67730819 -121548735 + L1MC4a LINE L1 6730 7808 0 2203 101 3 3 chr6 67730825 67731122 -121548432 + AluSx SINE Alu 1 297 -15 2173 118 3 0 chr6 67732338 67732642 -121546912 + AluSq SINE Alu 1 305 -8 419 246 16 16 chr6 67733276 67733398 -121546156 - L2 LINE L2 -949 2365 2244 275 272 0 25 chr6 67733508 67733589 -121545965 + MER116 DNA Mariner 1 79 -1 955 200 142 10 chr6 67733928 67734218 -121545336 - MER51A LTR ERV1 0 640 329 487 129 0 0 chr6 67734369 67734439 -121545115 - MER51A LTR ERV1 -564 70 1 23 54 0 0 chr6 67734952 67734989 -121544565 + AT_rich Low_complexity Low_complexity 1 37 0 697 212 0 89 chr6 67735300 67735479 -121544075 + FRAM SINE Alu 1 163 -3 939 239 20 0 chr6 67735641 67735838 -121543716 - MER58A DNA MER1_type -15 209 9 311 350 67 6 chr6 67735985 67736165 -121543389 - L2 LINE L2 -665 2649 2459 942 233 126 41 chr6 67736780 67737145 -121542409 - MSTD LTR MaLR 0 396 1 681 288 101 62 chr6 67737318 67737686 -121541868 - L2 LINE L2 0 3313 2932 442 269 46 0 chr6 67737847 67737955 -121541599 + MER81 DNA DNA 1 113 -1 412 266 25 19 chr6 67738361 67738519 -121541035 + L1MDb LINE L1 1157 1315 -5114 1212 241 123 47 chr6 67738522 67738928 -121540626 - LTR40a LTR ERVL 0 519 83 443 282 105 16 chr6 67739007 67739330 -121540224 + L1MDb LINE L1 1421 1772 -4654 710 189 7 0 chr6 67739340 67739483 -121540071 - L1MB2 LINE L1 -9 6162 6019 1426 233 23 28 chr6 67739491 67739843 -121539711 - MLT1A1 LTR MaLR -12 353 4 1231 188 8 8 chr6 67739845 67740085 -121539469 - L1MB2 LINE L1 -150 6021 5782 518 228 144 20 chr6 67740127 67740329 -121539225 + L1MDb LINE L1 1706 1988 -4438 657 255 107 34 chr6 67740403 67740881 -121538673 + L1MDb LINE L1 2108 2620 -3987 39 60 0 0 chr6 67740908 67740975 -121538579 + AT_rich Low_complexity Low_complexity 1 67 0 340 278 12 68 chr6 67741050 67741212 -121538342 + L1PA13 LINE L1 1 153 -6634 950 151 7 0 chr6 67741215 67741387 -121538167 + AluSp SINE Alu 145 317 0 1297 296 14 3 chr6 67741400 67741752 -121537802 + L1PA13 LINE L1 145 500 -6287 707 207 62 34 chr6 67741752 67741960 -121537594 + L1ME3A LINE L1 5951 6164 -6 4462 61 2 5 chr6 67743206 67743778 -121535776 - L1PA6 LINE L1 0 6154 5585 690 211 30 12 chr6 67744021 67744187 -121535367 - MIR SINE MIR 0 262 94 1584 172 33 0 chr6 67744379 67744652 -121534902 - AluJo SINE Alu -30 282 1 336 312 86 5 chr6 67745205 67745405 -121534149 - MIR SINE MIR -21 241 28 265 315 7 107 chr6 67745451 67745600 -121533954 - L2 LINE L2 0 3272 3139 235 328 76 29 chr6 67745781 67746019 -121533535 - L2 LINE L2 -220 3052 2804 762 171 116 61 chr6 67746271 67746452 -121533102 - MER20 DNA MER1_type -27 192 2 481 298 217 6 chr6 67746472 67746818 -121532736 - L2 LINE L2 -786 2528 2110 1520 194 7 20 chr6 67750979 67751272 -121528282 + AluJo SINE Alu 3 291 -21 504 0 0 0 chr6 67752177 67752233 -121527321 + (TG)n Simple_repeat Simple_repeat 1 56 0 367 183 110 0 chr6 67752259 67752341 -121527213 + L2 LINE L2 3210 3300 -13 213 191 0 21 chr6 67752879 67752926 -121526628 + L2 LINE L2 3263 3308 -5 24 0 0 0 chr6 67753819 67753843 -121525711 + AT_rich Low_complexity Low_complexity 1 24 0 341 377 82 14 chr6 67754030 67754176 -121525378 - MIR3 SINE MIR -15 193 38 235 256 70 23 chr6 67754462 67754548 -121525006 + MIR SINE MIR 117 206 -56 17059 93 11 13 chr6 67754886 67758196 -121521358 - L1PA7 LINE L1 -4 6465 3159 7622 117 15 18 chr6 67758315 67759980 -121519574 - L1PA7 LINE L1 -4013 2448 778 703 255 30 51 chr6 67760726 67760961 -121518593 - L2 LINE L2 -505 2809 2580 26 64 0 0 chr6 67761700 67761747 -121517807 + AT_rich Low_complexity Low_complexity 1 47 0 183 397 0 0 chr6 67762391 67762454 -121517100 + MIR SINE MIR 41 103 -105 415 318 108 45 chr6 67762549 67762772 -121516782 + MIR SINE MIR 1 237 -25 1593 116 165 131 chr6 67762773 67763101 -121516453 + Charlie3 DNA MER1_type 1 2712 0 219 154 0 0 chr6 67763129 67763168 -121516386 + (TTA)n Simple_repeat Simple_repeat 3 41 0 551 314 94 34 chr6 67763791 67764006 -121515548 + LTR67 LTR ERVL 91 292 -265 1033 251 5 5 chr6 67764006 67764229 -121515325 + MER58A DNA MER1_type 2 224 0 551 314 94 34 chr6 67764229 67764449 -121515105 + LTR67 LTR ERVL 292 552 -5 26 30 0 0 chr6 67766166 67766199 -121513355 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr6 67766306 67766330 -121513224 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr6 67766386 67766423 -121513131 + AT_rich Low_complexity Low_complexity 1 37 0 392 258 113 26 chr6 67766932 67767083 -121512471 - L2 LINE L2 -613 2701 2538 2278 123 32 13 chr6 67767805 67768180 -121511374 + L1PA16 LINE L1 5780 6161 -5 2217 113 7 0 chr6 67768982 67769284 -121510270 + AluSg SINE Alu 5 308 -2 6839 26 0 0 chr6 67769288 67770094 -121509460 - L1P LINE L1 -1337 4809 4004 2214 97 31 0 chr6 67770648 67770937 -121508617 - AluSq SINE Alu -15 298 1 2269 195 132 21 chr6 67771619 67772644 -121506910 + L1ME2 LINE L1 4600 5743 -421 2702 229 99 21 chr6 67772670 67773426 -121506128 - MER21B LTR ERV1 -30 833 19 368 216 0 103 chr6 67773451 67773548 -121506006 - MER21B LTR ERV1 -776 87 1 1578 220 33 28 chr6 67773549 67773971 -121505583 + L1ME2 LINE L1 5741 6164 0 339 161 0 35 chr6 67774123 67774210 -121505344 + L1ME2 LINE L1 6080 6163 -1 276 363 49 79 chr6 67774577 67774905 -121504649 - L2 LINE L2 -2 3270 2953 340 293 170 24 chr6 67775062 67775274 -121504280 - MIR SINE MIR 0 262 20 466 169 0 12 chr6 67776178 67776373 -121503181 + AluJo SINE Alu 1 223 -89 717 210 31 46 chr6 67776373 67776568 -121502986 + MER21B LTR ERV1 526 717 -146 458 224 279 0 chr6 67777087 67777234 -121502320 - AluY SINE Alu -21 290 103 238 314 122 12 chr6 67777257 67777429 -121502125 + MIR SINE MIR 66 256 -6 1800 162 7 0 chr6 67777587 67777898 -121501656 - AluJo SINE Alu 0 313 1 2025 111 35 3 chr6 67779303 67779591 -121499963 - AluSq SINE Alu -16 297 1 291 252 195 26 chr6 67779606 67779751 -121499803 + MER5A DNA MER1_type 2 186 -3 489 277 133 36 chr6 67779761 67780010 -121499544 - L3 LINE CR1 -572 1005 733 1151 169 27 5 chr6 67780081 67780300 -121499254 - L1MC1 LINE L1 -6 6327 6104 1444 155 20 24 chr6 67780351 67780648 -121498906 - L1MCa LINE L1 -5129 1297 1002 * 6877 197 16 26 chr6 67780633 67781269 -121498285 - L1 LINE L1 -1193 4953 4312 1501 122 148 38 chr6 67781269 67781532 -121498022 + AluSx SINE Alu 1 292 -20 6877 197 16 26 chr6 67781532 67781928 -121497626 - L1 LINE L1 -1834 4312 3914 2319 94 0 0 chr6 67781928 67782227 -121497327 - AluY SINE Alu -12 299 1 6877 197 16 26 chr6 67782227 67782792 -121496762 - L1 LINE L1 -2232 3914 3371 241 330 112 74 chr6 67784519 67784777 -121494777 - L2 LINE L2 -15 3257 2990 240 275 37 83 chr6 67785175 67785284 -121494270 - MIR3 SINE MIR -101 107 4 1565 183 35 10 chr6 67785696 67785985 -121493569 + AluJb SINE Alu 1 296 -16 277 403 40 11 chr6 67786195 67786371 -121493183 + L2 LINE L2 3089 3269 -3 2192 113 3 7 chr6 67787317 67787619 -121491935 - AluSx SINE Alu -11 301 1 978 247 38 3 chr6 67787895 67788237 -121491317 + L1ME1 LINE L1 2415 2785 -3361 330 244 197 5 chr6 67788247 67788440 -121491114 + L1ME1 LINE L1 4137 4366 -1780 2212 216 71 37 chr6 67788570 67789768 -121489786 + L1ME1 LINE L1 4691 5927 -239 1881 147 7 23 chr6 67790025 67790331 -121489223 - AluJo SINE Alu 0 312 12 338 325 75 52 chr6 67790387 67790639 -121488915 + HAL1 LINE L1 2245 2502 -5 944 191 166 36 chr6 67790805 67791083 -121488471 - LTR40b LTR ERVL 0 462 149 25 0 0 0 chr6 67791083 67791108 -121488446 + AT_rich Low_complexity Low_complexity 1 25 0 856 85 0 0 chr6 67791108 67791214 -121488340 - AluSp/q SINE Alu -22 291 186 744 122 89 0 chr6 67791274 67791397 -121488157 + MER1B DNA MER1_type 1 134 -163 1894 109 43 23 chr6 67791407 67791710 -121487844 + MER1B DNA MER1_type 31 339 0 297 320 30 10 chr6 67791713 67791813 -121487741 - LTR40a LTR ERVL -414 105 4 2270 78 11 0 chr6 67791919 67792200 -121487354 + AluY SINE Alu 1 284 -27 189 0 0 0 chr6 67792208 67792229 -121487325 + (TG)n Simple_repeat Simple_repeat 2 22 0 1841 134 23 29 chr6 67792483 67792790 -121486764 + AluJo SINE Alu 1 305 -7 1372 196 68 4 chr6 67792960 67793225 -121486329 + AluJo SINE Alu 1 282 -30 464 299 124 34 chr6 67793539 67793716 -121485838 - MIR SINE MIR -24 238 46 1605 161 145 3 chr6 67793979 67794365 -121485189 - L1MB5 LINE L1 0 6410 5970 1755 147 101 58 chr6 67794365 67794780 -121484774 - MLT1C LTR MaLR -34 433 1 2999 180 43 12 chr6 67794780 67795652 -121483902 - L1MB5 LINE L1 -711 5703 4809 590 250 54 0 chr6 67795670 67795854 -121483700 + L1PBa LINE L1 6 199 -6664 7722 163 54 6 chr6 67795861 67797253 -121482301 + L1PBa LINE L1 663 2370 -4492 2191 121 7 0 chr6 67797253 67797551 -121482003 + AluY SINE Alu 1 300 -11 7722 163 54 6 chr6 67797551 67798304 -121481250 + L1PBa LINE L1 2370 3086 -3776 845 222 53 23 chr6 67798333 67798430 -121481124 - L1MB5 LINE L1 -4036 2348 2255 949 208 130 87 chr6 67798430 67798777 -121480777 - MLT1A1 LTR MaLR -3 362 1 845 222 53 23 chr6 67798777 67799279 -121480275 - L1MB5 LINE L1 -4129 2255 1650 1142 107 0 0 chr6 67799283 67799433 -121480121 - AluSg/x SINE Alu -5 307 158 761 159 75 31 chr6 67799469 67799695 -121479859 + Charlie5 DNA MER1_type 2389 2624 0 228 200 62 15 chr6 67801577 67801642 -121477912 + CT-rich Low_complexity Low_complexity 4 71 0 256 346 58 0 chr6 67801899 67802003 -121477551 - L2 LINE L2 -221 3051 2942 * 447 303 123 41 chr6 67802001 67802139 -121477415 - L2 LINE L2 0 3313 3188 2085 129 36 41 chr6 67802139 67802503 -121477051 - THE1B LTR MaLR 0 364 3 447 303 123 41 chr6 67802503 67802608 -121476946 - L2 LINE L2 -125 3188 3050 2060 148 0 3 chr6 67803697 67804002 -121475552 - AluJb SINE Alu -8 304 1 1831 174 4 0 chr6 67804075 67804356 -121475198 + AluSx SINE Alu 1 282 -30 7856 14 0 0 chr6 67804624 67805963 -121473591 - L1PA2 LINE L1 0 6155 4815 2351 33 7 3 chr6 67805963 67806270 -121473284 + L1P LINE L1 3597 3904 -2242 18191 78 8 0 chr6 67806371 67808895 -121470659 - L1P LINE L1 -3603 2543 1 3344 288 62 25 chr6 67808897 67810327 -121469227 + L2 LINE L2 1825 3313 0 2157 133 7 0 chr6 67810340 67810690 -121468864 + AluSx SINE Alu 1 352 0 487 183 8 71 chr6 67810924 67811050 -121468504 - MER58B DNA MER1_type -5 336 219 706 234 15 5 chr6 67811208 67811405 -121468149 + L1ME LINE L1 5606 5804 -317 1108 312 51 62 chr6 67811959 67812253 -121467301 - L2 LINE L2 -499 2815 2519 2229 124 16 0 chr6 67812253 67812560 -121466994 + AluSx SINE Alu 1 312 0 1108 312 51 62 chr6 67812560 67813075 -121466479 - L2 LINE L2 -795 2519 2015 781 273 60 23 chr6 67813250 67813598 -121465956 + Charlie2b DNA MER1_type 73 433 -2349 4140 208 104 99 chr6 67814056 67815331 -121464223 + Charlie2b DNA MER1_type 453 1851 -1011 581 176 93 0 chr6 67815331 67815439 -121464115 + AluJb SINE Alu 182 299 -13 4140 208 104 99 chr6 67815439 67816209 -121463345 + Charlie2b DNA MER1_type 1851 2616 -166 4716 163 51 7 chr6 67816244 67817498 -121462056 - L1MA8 LINE L1 -3 7707 6399 25 0 0 0 chr6 67817506 67817531 -121462023 + AT_rich Low_complexity Low_complexity 1 25 0 4581 150 58 19 chr6 67817531 67818685 -121460869 - L1PA16 LINE L1 -16 6150 4949 1166 255 34 53 chr6 67818688 67819010 -121460544 - L1PA15-16 LINE L1 -5773 1076 761 2175 153 114 5 chr6 67819021 67819407 -121460147 + MSTA LTR MaLR 1 428 0 7888 159 83 15 chr6 67819407 67820952 -121458602 + MSTA-int LTR MaLR 1 1651 0 1805 175 127 41 chr6 67820952 67821346 -121458208 + MSTA LTR MaLR 1 428 0 3295 179 84 29 chr6 67821346 67821690 -121457864 - L1PA15-16 LINE L1 -6094 755 431 1860 162 0 13 chr6 67821690 67821998 -121457556 + AluSx SINE Alu 1 304 -8 3295 179 84 29 chr6 67821998 67822367 -121457187 - L1PA15-16 LINE L1 -6418 431 3 * 4466 171 30 50 chr6 67822366 67823518 -121456036 - L1MA8 LINE L1 -1167 6398 5269 22 80 0 0 chr6 67823524 67823574 -121455980 + AT_rich Low_complexity Low_complexity 1 50 0 30141 117 19 31 chr6 67823576 67829817 -121449737 - L1PA7 LINE L1 0 6154 2 5685 206 57 12 chr6 67829833 67830320 -121449234 - L1MA8 LINE L1 -2415 5150 4686 2708 146 73 0 chr6 67830320 67830798 -121448756 - MER75 DNA T2_type 0 514 2 5685 206 57 12 chr6 67830798 67831853 -121447701 - L1MA8 LINE L1 -2879 4686 3537 1510 236 23 41 chr6 67831895 67832251 -121447303 - L1MA8 LINE L1 -4246 3320 2976 2380 81 0 3 chr6 67832251 67832547 -121447007 - AluY SINE Alu -16 295 1 1510 236 23 41 chr6 67832547 67832749 -121446805 - L1MA8 LINE L1 -4590 2976 2772 312 226 19 19 chr6 67832776 67832882 -121446672 + Charlie2 DNA MER1_type 2721 2826 -36 1038 178 14 68 chr6 67832885 67833104 -121446450 + AluJb SINE Alu 88 294 -18 1061 241 107 50 chr6 67833143 67833621 -121445933 - MLT1D LTR MaLR 0 505 1 2059 136 7 3 chr6 67833742 67834051 -121445503 + AluSx SINE Alu 3 312 0 24 0 0 0 chr6 67834489 67834513 -121445041 + AT_rich Low_complexity Low_complexity 1 24 0 189 171 0 0 chr6 67835239 67835274 -121444280 + (CA)n Simple_repeat Simple_repeat 2 36 0 438 281 51 56 chr6 67835565 67835761 -121443793 + MIR3 SINE MIR 3 197 -11 1888 169 0 3 chr6 67836084 67836379 -121443175 + AluJb SINE Alu 2 295 -17 199 315 11 45 chr6 67837585 67837674 -121441880 - MIR SINE MIR -91 171 86 2035 105 3 11 chr6 67838775 67839089 -121440465 - AluSx SINE Alu 0 312 1 258 146 62 0 chr6 67839755 67839803 -121439751 - MIR SINE MIR 0 262 212 2308 91 10 0 chr6 67840426 67840723 -121438831 + AluSc SINE Alu 1 300 -9 303 297 61 40 chr6 67841200 67841348 -121438206 - MIR SINE MIR -20 242 92 1422 143 56 4 chr6 67842910 67843161 -121436393 - Tigger5 DNA MER2_type -1 2322 2059 1040 216 0 19 chr6 67843413 67843621 -121435933 - MIR SINE MIR -16 246 43 202 366 53 8 chr6 67843864 67843995 -121435559 + MIR SINE MIR 47 183 -79 446 254 47 82 chr6 67844157 67844668 -121434886 + L1MC5 LINE L1 7261 7728 -233 1279 209 35 28 chr6 67844683 67845105 -121434449 + MLT2B1 LTR ERVL 1 467 -53 21 0 0 0 chr6 67845172 67845193 -121434361 + AT_rich Low_complexity Low_complexity 1 21 0 833 207 96 29 chr6 67845449 67845657 -121433897 + MER58A DNA MER1_type 2 223 -1 21 57 0 0 chr6 67845922 67845957 -121433597 + AT_rich Low_complexity Low_complexity 1 35 0 1897 132 6 60 chr6 67846480 67846798 -121432756 + AluSx SINE Alu 1 301 -11 1411 212 71 79 chr6 67847497 67847992 -121431562 - L2 LINE L2 -667 2647 2157 13873 128 26 36 chr6 67848042 67848898 -121430656 + Tigger1 DNA MER2_type 5 868 -1550 2031 120 3 7 chr6 67848898 67849198 -121430356 + AluSx SINE Alu 1 299 -13 13873 128 26 36 chr6 67849198 67850778 -121428776 + Tigger1 DNA MER2_type 868 2416 -2 1705 171 27 10 chr6 67851275 67851568 -121427986 - AluJo SINE Alu -14 298 1 359 270 61 17 chr6 67852003 67852118 -121427436 + L2 LINE L2 2987 3106 -166 559 278 116 31 chr6 67852164 67852394 -121427160 - MIR SINE MIR -14 248 3 5901 102 11 5 chr6 67852634 67853826 -121425728 - L1PA14 LINE L1 0 6161 4963 1301 190 0 0 chr6 67853927 67854180 -121425374 - L1PA14 LINE L1 -1513 4633 4381 2067 140 0 0 chr6 67854634 67854927 -121424627 + AluSx SINE Alu 1 293 -19 224 176 216 14 chr6 67858174 67858248 -121421306 + MIR SINE MIR 58 146 -116 756 238 64 42 chr6 67858355 67858620 -121420934 + L2 LINE L2 3042 3312 -1 24 0 0 0 chr6 67859080 67859104 -121420450 + AT_rich Low_complexity Low_complexity 1 24 0 2140 110 3 0 chr6 67860128 67860410 -121419144 - AluSp SINE Alu -30 283 1 1033 50 0 0 chr6 67860412 67860532 -121419022 - AluSp SINE Alu -181 132 13 215 333 156 28 chr6 67860948 67861128 -121418426 + MIR SINE MIR 23 225 -37 * 227 444 0 0 chr6 67861120 67861255 -121418299 + L2 LINE L2 1095 1229 -2085 349 317 25 8 chr6 67861262 67861382 -121418172 + MIR SINE MIR 123 244 -18 23 0 0 0 chr6 67861410 67861433 -121418121 + AT_rich Low_complexity Low_complexity 1 23 0 344 286 54 9 chr6 67861663 67861775 -121417779 - L2 LINE L2 -1 3312 3196 1007 166 36 20 chr6 67862052 67862255 -121417299 + MSTC LTR MaLR 216 428 0 614 194 172 0 chr6 67862270 67862404 -121417150 - MER5A DNA MER1_type 0 189 33 1200 136 127 0 chr6 67862883 67863104 -121416450 + L1PA16 LINE L1 5909 6157 -9 28 0 0 0 chr6 67863104 67863132 -121416422 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr6 67863430 67863467 -121416087 + AT_rich Low_complexity Low_complexity 1 37 0 37 23 0 0 chr6 67863789 67863833 -121415721 + AT_rich Low_complexity Low_complexity 1 44 0 2179 111 0 3 chr6 67864630 67864919 -121414635 + AluSp SINE Alu 1 288 -25 21 0 0 0 chr6 67864919 67864940 -121414614 + AT_rich Low_complexity Low_complexity 1 21 0 231 240 0 0 chr6 67865061 67865111 -121414443 + (TA)n Simple_repeat Simple_repeat 2 51 0 326 152 0 0 chr6 67865230 67865276 -121414278 - MER5A DNA MER1_type -111 78 33 749 261 16 11 chr6 67865514 67865698 -121413856 - L2 LINE L2 0 3313 3129 2787 93 87 5 chr6 67865875 67866324 -121413230 + LTR19A LTR ERV1 1 486 0 22 56 0 0 chr6 67867442 67867478 -121412076 + AT_rich Low_complexity Low_complexity 1 36 0 2096 108 3 24 chr6 67867773 67868089 -121411465 + AluSx SINE Alu 1 310 0 827 222 26 92 chr6 67868095 67868401 -121411153 + MLT2B1 LTR ERVL 26 311 -209 982 153 15 111 chr6 67868404 67868666 -121410888 - Tigger2 DNA MER2_type -1 2717 2481 1034 92 0 0 chr6 67868670 67868801 -121410753 + AluSq/x SINE Alu 3 133 -179 1391 146 5 0 chr6 67868890 67869103 -121410451 - Tigger2 DNA MER2_type -1965 753 540 2128 113 13 0 chr6 67870066 67870368 -121409186 - AluSx SINE Alu -6 306 1 1119 290 49 8 chr6 67870368 67870733 -121408821 - LTR16C LTR ERVL -32 459 80 344 279 78 8 chr6 67870859 67870988 -121408566 + LTR33 LTR ERVL 327 464 -57 301 233 0 14 chr6 67871330 67871403 -121408151 + MIR SINE MIR 172 243 -19 * 1593 267 158 40 chr6 67871402 67871456 -121408098 - L2 LINE L2 0 3313 3267 2156 100 0 4 chr6 67871456 67871736 -121407818 + AluSg1 SINE Alu 17 295 -14 1593 267 158 40 chr6 67871736 67872387 -121407167 - L2 LINE L2 -46 3267 2525 267 27 108 0 chr6 67872398 67872435 -121407119 - MLT2A2 LTR ERVL 0 453 413 377 29 29 29 chr6 67872438 67872507 -121407047 + (TA)n Simple_repeat Simple_repeat 1 69 0 461 18 0 0 chr6 67872527 67872582 -121406972 - MLT2A2 LTR ERVL -398 55 1 396 58 0 0 chr6 67872582 67872634 -121406920 - HERVL LTR ERVL 0 5654 5603 269 211 14 14 chr6 67872634 67872653 -121406901 - Ricksha DNA DNA -1700 346 276 557 118 37 6 chr6 67872653 67872814 -121406740 + (TA)n Simple_repeat Simple_repeat 2 167 0 2728 81 35 10 chr6 67872814 67873208 -121406346 - MLT2A1 LTR ERVL -40 404 1 16089 72 10 1 chr6 67873208 67875250 -121404304 - HERVL-A1 LTR ERVL 0 5654 3593 250 239 11 11 chr6 67875250 67875338 -121404216 + (TA)n Simple_repeat Simple_repeat 2 89 0 238 298 48 0 chr6 67875344 67875428 -121404126 - L1MC4 LINE L1 -1341 6701 6614 234 220 0 0 chr6 67875389 67875439 -121404115 + L1MC4 LINE L1 6653 6702 -1340 * 228 301 0 43 chr6 67875463 67875556 -121403998 + L1MC4 LINE L1 6615 6703 -1339 355 274 12 12 chr6 67875567 67875731 -121403823 + (CATG)n Simple_repeat Simple_repeat 1 164 0 220 281 35 0 chr6 67875741 67875798 -121403756 + (TATG)n Simple_repeat Simple_repeat 2 60 0 253 250 0 17 chr6 67875798 67875858 -121403696 + MER4-int LTR ERV1 1102 1160 -5438 299 216 0 20 chr6 67875858 67875960 -121403594 + (TATG)n Simple_repeat Simple_repeat 4 103 0 334 237 0 15 chr6 67876043 67876174 -121403380 + (TA)n Simple_repeat Simple_repeat 1 129 0 2148 113 6 10 chr6 67976199 67976510 -121303044 - AluSg SINE Alu 0 310 1 311 262 7 28 chr6 67976512 67976653 -121302901 - MER113 DNA MER1_type? -290 231 94 525 364 68 28 chr6 67977145 67977617 -121301937 - L1M4 LINE L1 -3182 2964 2474 236 329 0 0 chr6 67978066 67978148 -121301406 + CT-rich Low_complexity Low_complexity 2 83 0 381 309 102 38 chr6 67978458 67978773 -121300781 - L1 LINE L1 -2854 3292 2849 2217 100 3 7 chr6 67979030 67979329 -121300225 - AluSx SINE Alu -14 298 1 465 261 37 30 chr6 67979470 67979604 -121299950 + MIR SINE MIR 101 235 -27 892 125 62 7 chr6 67979642 67979786 -121299768 + FRAM SINE Alu 18 169 -7 2379 109 0 0 chr6 67979786 67980097 -121299457 + AluSx SINE Alu 1 311 -1 1868 120 4 11 chr6 67980156 67980431 -121299123 + AluSx SINE Alu 40 312 0 201 242 61 0 chr6 67980449 67980515 -121299039 + MIR SINE MIR 137 206 -56 1331 150 117 22 chr6 67980650 67980923 -121298631 + AluSq SINE Alu 1 299 -4 2209 113 3 3 chr6 67980931 67981231 -121298323 + AluSg SINE Alu 1 300 -10 1937 112 3 31 chr6 67981623 67981909 -121297645 - AluSp SINE Alu -13 300 23 1895 94 0 58 chr6 67981909 67982183 -121297371 - AluSg SINE Alu -51 259 1 2301 119 0 0 chr6 67982678 67982980 -121296574 + AluSg SINE Alu 1 302 -8 212 0 36 0 chr6 67983256 67983284 -121296270 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1960 117 0 67 chr6 67983285 67983585 -121295969 - AluSx SINE Alu -32 280 1 377 211 178 70 chr6 67983585 67983770 -121295784 + MIR SINE MIR 40 244 -18 1673 174 0 37 chr6 67983795 67984123 -121295431 - AluJo SINE Alu 0 317 1 573 126 0 118 chr6 67984132 67984161 -121295393 - FLAM_A SINE Alu -177 134 103 2448 80 3 0 chr6 67984161 67984461 -121295093 + AluSc SINE Alu 1 301 -8 573 126 0 118 chr6 67984461 67984566 -121294988 - FLAM_A SINE Alu -208 103 16 434 101 45 11 chr6 67985219 67985308 -121294246 - MER67C LTR ERV1 0 710 619 2453 78 0 3 chr6 67985334 67985630 -121293924 + AluSp SINE Alu 1 295 -18 704 175 8 8 chr6 67985647 67985773 -121293781 - AluJb SINE Alu -185 127 2 1709 151 61 4 chr6 67985788 67986066 -121293488 - AluJo SINE Alu -16 296 3 2115 130 3 3 chr6 67986093 67986392 -121293162 - AluSq SINE Alu -14 299 1 627 189 47 0 chr6 67986392 67986519 -121293035 - MER67C LTR ERV1 -91 619 487 2784 167 81 0 chr6 67986535 67987093 -121292461 - LTR26 LTR ERV1 0 603 1 1147 187 40 53 chr6 67987097 67987174 -121292380 - MER67C LTR ERV1 -207 503 426 2510 69 0 3 chr6 67987174 67987478 -121292076 - AluY SINE Alu -8 303 1 2314 89 3 13 chr6 67987478 67987779 -121291775 - AluSx SINE Alu -13 299 1 1147 187 40 53 chr6 67987779 67988000 -121291554 - MER67C LTR ERV1 -282 428 208 2235 121 10 0 chr6 67988221 67988528 -121291026 - AluSx SINE Alu 0 312 3 351 78 47 0 chr6 67988583 67988647 -121290907 + CT-rich Low_complexity Low_complexity 1 67 0 273 98 0 0 chr6 67988736 67988777 -121290777 + (CA)n Simple_repeat Simple_repeat 2 42 0 1998 113 62 0 chr6 67989558 67989849 -121289705 + AluSx SINE Alu 1 309 -3 233 318 6 51 chr6 67989963 67990139 -121289415 + (TTGGGG)n Simple_repeat Simple_repeat 1 168 0 223 374 32 0 chr6 67991646 67991769 -121287785 - L2 LINE L2 -220 3052 2926 2111 130 0 3 chr6 67991983 67992282 -121287272 + AluSx SINE Alu 1 298 -14 2319 61 17 7 chr6 67992678 67992974 -121286580 + AluSq SINE Alu 1 299 -14 371 315 168 33 chr6 67993241 67993758 -121285796 - L2 LINE L2 -724 2590 2004 2013 97 7 45 chr6 67993770 67993911 -121285643 + AluSx SINE Alu 1 146 -166 2112 74 53 11 chr6 67993911 67994195 -121285359 + AluSg SINE Alu 1 296 -14 2013 97 7 45 chr6 67994195 67994361 -121285193 + AluSx SINE Alu 146 296 -16 275 266 11 0 chr6 67995141 67995235 -121284319 + GA-rich Low_complexity Low_complexity 1 95 0 317 242 200 33 chr6 67995794 67995914 -121283640 - MIR3 SINE MIR -54 154 15 442 280 80 23 chr6 67996189 67996364 -121283190 + L2 LINE L2 3092 3276 -37 1318 130 0 0 chr6 67996364 67996564 -121282990 + AluSg/x SINE Alu 105 304 -8 256 250 26 26 chr6 67996584 67996660 -121282894 + MIR SINE MIR 175 250 -12 1069 196 0 0 chr6 67996725 67996893 -121282661 + FAM SINE Alu 1 168 -7 203 185 37 49 chr6 67996929 67997010 -121282544 + (TCTCTG)n Simple_repeat Simple_repeat 3 82 0 * 231 213 16 0 chr6 67996952 67997013 -121282541 + CT-rich Low_complexity Low_complexity 2 63 0 793 154 0 42 chr6 67997356 67997499 -121282055 + FLAM_C SINE Alu 1 137 -6 436 303 13 26 chr6 67997609 67997764 -121281790 + L2 LINE L2 2910 3062 -251 27 0 0 0 chr6 67997778 67997805 -121281749 + AT_rich Low_complexity Low_complexity 1 27 0 1753 135 53 3 chr6 67997809 67998091 -121281463 + AluJb SINE Alu 1 296 -16 354 269 128 79 chr6 67998360 67998577 -121280977 + L1ME3A LINE L1 5811 6050 -114 2088 96 11 0 chr6 67998577 67998880 -121280674 + AluSp SINE Alu 1 306 0 354 269 128 79 chr6 67998880 67998966 -121280588 + L1ME3A LINE L1 6050 6130 -34 2045 75 53 3 chr6 67998967 67999249 -121280305 + AluSc SINE Alu 1 296 -13 1376 174 0 16 chr6 67999315 67999562 -121279992 - AluJb SINE Alu -55 257 15 366 139 35 0 chr6 67999802 67999888 -121279666 + G-rich Low_complexity Low_complexity 3 91 0 188 247 13 52 chr6 68100888 68100965 -121178589 - MIR SINE MIR -55 207 134 2174 120 10 0 chr6 68101022 68101322 -121178232 + AluSc SINE Alu 1 303 -6 643 291 236 18 chr6 68101433 68101818 -121177736 - L2 LINE L2 -1 3312 2844 266 225 25 58 chr6 68101838 68101958 -121177596 + L1MC4 LINE L1 6621 6736 -1306 512 227 81 21 chr6 68102748 68102939 -121176615 - MLT1J1 LTR MaLR -215 235 36 5643 47 18 6 chr6 68103114 68103821 -121175733 + L1PA8 LINE L1 5452 6167 -5 234 302 0 0 chr6 68105156 68105242 -121174312 + L1MEd LINE L1 674 759 -5360 525 318 75 39 chr6 68105476 68105784 -121173770 - L2 LINE L2 0 3313 2995 328 271 31 0 chr6 68105849 68105945 -121173609 + MLT1J2 LTR MaLR 43 141 -309 390 228 99 19 chr6 68105956 68106118 -121173436 + L1MEd LINE L1 2760 2934 -3195 578 271 86 27 chr6 68106205 68106720 -121172834 + L1P4 LINE L1 4914 5455 -711 342 175 0 0 chr6 68106858 68106915 -121172639 - L2 LINE L2 0 3313 3257 5717 101 15 14 chr6 68106995 68107872 -121171682 - L1PA13 LINE L1 0 6163 5289 860 298 75 27 chr6 68108030 68108759 -121170795 + L1ME4a LINE L1 5347 6110 -11 330 290 65 19 chr6 68108807 68108962 -121170592 - L1M LINE L1 -695 5426 5265 180 337 0 23 chr6 68109331 68109417 -121170137 + L2 LINE L2 1544 1627 -1687 207 385 0 0 chr6 68109582 68109660 -121169894 - L2 LINE L2 -14 3258 3181 2610 39 0 7 chr6 68109719 68110027 -121169527 - AluY SINE Alu -5 306 1 1699 165 90 9 chr6 68111029 68111351 -121168203 + MER7A DNA MER2_type 1 346 0 249 33 0 0 chr6 68111351 68111381 -121168173 + (CA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr6 68112407 68112429 -121167125 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 68113073 68113095 -121166459 + AT_rich Low_complexity Low_complexity 1 22 0 216 243 71 43 chr6 68114670 68114740 -121164814 - L2 LINE L2 0 3272 3201 256 111 62 37 chr6 68116352 68116433 -121163121 + (TATAA)n Simple_repeat Simple_repeat 2 84 0 280 188 109 119 chr6 68116433 68116534 -121163020 - MER63 DNA MER1_type -336 726 1 254 205 12 0 chr6 68116753 68116836 -121162718 + (TA)n Simple_repeat Simple_repeat 2 85 0 206 317 0 0 chr6 68117429 68117489 -121162065 - L2 LINE L2 -17 3296 3237 1503 205 3 10 chr6 68118167 68118186 -121161368 - AluJb SINE Alu -12 300 282 189 0 0 0 chr6 68118186 68118207 -121161347 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1503 205 3 10 chr6 68118207 68118489 -121161065 - AluJb SINE Alu -30 282 1 414 170 132 0 chr6 68119213 68119319 -121160235 + L1P LINE L1 5118 5237 -909 1613 171 11 0 chr6 68119319 68119582 -121159972 + AluJb SINE Alu 1 266 -46 581 270 86 45 chr6 68119604 68120290 -121159264 - L1M4 LINE L1 -3049 3097 2384 7375 53 12 21 chr6 68120384 68122098 -121157456 + SVA Other Other 7 1386 0 1715 133 33 7 chr6 68122524 68122824 -121156730 - Tigger4(Zombi) DNA MER2_type 0 2731 2424 201 325 26 0 chr6 68122838 68122915 -121156639 - L2 LINE L2 -665 2649 2571 354 248 29 73 chr6 68123001 68123138 -121156416 + L1ME LINE L1 5513 5643 -478 1735 186 10 10 chr6 68123196 68123508 -121156046 - AluJo SINE Alu 0 312 1 1560 179 28 6 chr6 68123970 68124294 -121155260 + L1MA4 LINE L1 5969 6299 -1 1919 150 14 0 chr6 68124355 68124649 -121154905 - AluSx SINE Alu -14 298 1 26 0 0 0 chr6 68124651 68124677 -121154877 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr6 68125099 68125134 -121154420 + AT_rich Low_complexity Low_complexity 1 35 0 2197 124 30 37 chr6 68125722 68126150 -121153404 - L1MA5 LINE L1 -8 6292 5868 1138 136 31 11 chr6 68126150 68126341 -121153213 + L1M1 LINE L1 5592 5786 -514 1434 224 31 36 chr6 68126956 68127314 -121152240 + MLT1A1 LTR MaLR 10 365 0 21 36 0 0 chr6 68128688 68128716 -121150838 + AT_rich Low_complexity Low_complexity 1 28 0 273 287 59 0 chr6 68128866 68128967 -121150587 + MIR SINE MIR 2 108 -154 34 0 0 0 chr6 68129007 68129041 -121150513 + AT_rich Low_complexity Low_complexity 1 34 0 306 309 21 0 chr6 68129092 68129189 -121150365 + MIR SINE MIR 151 249 -13 370 307 132 33 chr6 68130030 68130661 -121148893 + L1M4 LINE L1 3443 4135 -2011 821 185 63 44 chr6 68130883 68131153 -121148401 + MER33 DNA MER1_type 50 324 0 204 40 0 0 chr6 68131228 68131253 -121148301 + (GGA)n Simple_repeat Simple_repeat 1 25 0 2247 112 0 0 chr6 68131880 68132167 -121147387 - AluSc SINE Alu -20 289 3 217 373 31 37 chr6 68132527 68132688 -121146866 - L2 LINE L2 -187 3085 2926 437 330 78 80 chr6 68133057 68133849 -121145705 + L2 LINE L2 1680 2470 -844 197 422 7 7 chr6 68134133 68134268 -121145286 + L2 LINE L2 2730 2864 -450 312 301 68 38 chr6 68134365 68134498 -121145056 - L2 LINE L2 0 3272 3136 1526 165 26 88 chr6 68134606 68134994 -121144560 + MLT1A1 LTR MaLR 1 364 -1 299 373 30 30 chr6 68135601 68135802 -121143752 - L2 LINE L2 -918 2396 2196 751 185 0 0 chr6 68135996 68136115 -121143439 + FLAM_C SINE Alu 5 123 -20 2292 75 0 0 chr6 68136606 68136951 -121142603 + AluY SINE Alu 1 345 0 316 247 11 22 chr6 68137596 68137685 -121141869 + L1MC4 LINE L1 6616 6703 -1339 348 368 30 6 chr6 68137782 68137948 -121141606 - L2 LINE L2 -231 3041 2872 216 0 0 0 chr6 68138035 68138059 -121141495 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1694 191 37 57 chr6 68138205 68138607 -121140947 + MLT1C LTR MaLR 74 467 0 25 0 0 0 chr6 68138723 68138748 -121140806 + AT_rich Low_complexity Low_complexity 1 25 0 387 196 78 10 chr6 68138748 68138803 -121140751 - L1MA9 LINE L1 -22 6290 6240 180 111 0 0 chr6 68138803 68138830 -121140724 + (TA)n Simple_repeat Simple_repeat 2 28 0 387 196 78 10 chr6 68138830 68138876 -121140678 - L1MA9 LINE L1 -72 6240 6182 3853 167 33 0 chr6 68138881 68139580 -121139974 - L1MA9 LINE L1 -232 6080 5359 3342 204 35 11 chr6 68139578 68140374 -121139180 + L1 LINE L1 4583 5397 -749 * 213 39 0 0 chr6 68140462 68140488 -121139066 + (T)n Simple_repeat Simple_repeat 1 26 0 242 228 82 134 chr6 68141056 68141227 -121138327 + L2 LINE L2 3149 3310 -3 1327 240 37 91 chr6 68141683 68141709 -121137845 - MLT1F1 LTR MaLR -12 555 529 1119 189 74 74 chr6 68141709 68142074 -121137480 + MLT1A1 LTR MaLR 1 365 0 1327 240 37 91 chr6 68142074 68142564 -121136990 - MLT1F1 LTR MaLR -38 529 67 572 290 61 75 chr6 68142891 68143332 -121136222 - L1MEd LINE L1 -5041 1078 644 435 38 0 0 chr6 68143474 68143527 -121136027 + (TATCG)n Simple_repeat Simple_repeat 3 55 0 2038 110 7 0 chr6 68143527 68143809 -121135745 - AluSg1 SINE Alu -25 284 1 315 307 63 59 chr6 68143939 68144177 -121135377 - L1MEd LINE L1 -5779 340 102 23 0 0 0 chr6 68145326 68145349 -121134205 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr6 68146733 68146771 -121132783 + AT_rich Low_complexity Low_complexity 1 38 0 196 318 56 65 chr6 68146823 68146930 -121132624 - L2 LINE L2 -5 3308 3203 615 310 125 4 chr6 68146942 68147174 -121132380 - MIR SINE MIR -1 261 2 368 343 53 6 chr6 68147519 68147688 -121131866 - MIR SINE MIR -71 191 15 369 247 16 186 chr6 68148328 68148575 -121130979 - MIR SINE MIR -50 212 8 667 254 6 12 chr6 68149482 68149651 -121129903 + FAM SINE Alu 1 168 -7 291 114 0 0 chr6 68149658 68149702 -121129852 + (TTA)n Simple_repeat Simple_repeat 2 45 0 469 218 63 69 chr6 68150918 68151092 -121128462 - MER5B DNA MER1_type -1 177 5 216 0 0 0 chr6 68151891 68151915 -121127639 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 199 308 220 0 chr6 68152330 68152421 -121127133 - L2 LINE L2 -13 3300 3190 22 56 0 0 chr6 68157205 68157241 -121122313 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr6 68160566 68160596 -121118958 + AT_rich Low_complexity Low_complexity 1 30 0 550 296 6 3 chr6 68163481 68163652 -121115902 + MIR SINE MIR 17 184 -65 983 189 11 0 chr6 68163655 68163830 -121115724 - MER45A DNA AcHobo 0 178 2 607 271 133 64 chr6 68163905 68164392 -121115162 - LTR33 LTR ERVL 0 521 1 293 248 257 0 chr6 68165486 68165587 -121113967 + MIR SINE MIR 28 154 -108 233 188 257 49 chr6 68165743 68165887 -121113667 - L3 LINE CR1 -1115 462 289 1293 248 106 10 chr6 68166774 68167178 -121112376 - MSTB2 LTR MaLR 0 457 15 1429 163 4 8 chr6 68167393 68167639 -121111915 - Tigger3(Golem) DNA MER2_type 0 3029 2785 766 186 50 19 chr6 68167615 68167776 -121111778 - Tigger3(Golem) DNA MER2_type -2854 175 10 * 442 332 61 8 chr6 68167835 68168082 -121111472 - MIR SINE MIR 0 262 3 269 261 0 15 chr6 68168277 68168342 -121111212 - L2 LINE L2 0 3272 3209 301 339 63 8 chr6 68169428 68169555 -121109999 - MIR SINE MIR -57 151 18 1482 199 7 0 chr6 68171134 68171410 -121108144 - AluJb SINE Alu -24 288 11 373 224 42 56 chr6 68171447 68171590 -121107964 + MER103 DNA DNA 1 141 -25 267 286 157 49 chr6 68171725 68172151 -121107403 - L1ME4a LINE L1 -58 6063 5592 3387 54 52 17 chr6 68172269 68172731 -121106823 - L1PA8 LINE L1 -4 6168 5691 2108 130 3 0 chr6 68173376 68173684 -121105870 + AluSq SINE Alu 1 309 -4 437 259 37 19 chr6 68173854 68174016 -121105538 - HsTC2 DNA Tc2 -1006 892 728 28 61 0 0 chr6 68174558 68174607 -121104947 + AT_rich Low_complexity Low_complexity 1 49 0 2393 245 67 29 chr6 68174731 68175489 -121104065 + L1ME1 LINE L1 5360 6146 -20 673 200 0 0 chr6 68176016 68176136 -121103418 - FRAM SINE Alu -17 159 40 215 132 38 0 chr6 68176149 68176202 -121103352 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 436 243 62 21 chr6 68176746 68176890 -121102664 - MER97b DNA MER1_type? -3 1050 901 195 204 0 0 chr6 68176896 68176940 -121102614 + (TA)n Simple_repeat Simple_repeat 2 45 0 22 35 0 0 chr6 68177415 68177444 -121102110 + AT_rich Low_complexity Low_complexity 1 29 0 708 223 40 17 chr6 68177458 68177633 -121101921 + MER97a DNA MER1_type? 394 572 -322 * 1686 215 20 3 chr6 68177626 68177984 -121101570 - MER97a DNA MER1_type? -530 364 1 339 169 0 0 chr6 68178039 68178110 -121101444 + GA-rich Low_complexity Low_complexity 1 71 0 882 19 0 0 chr6 68178171 68178275 -121101279 + (TTTTA)n Simple_repeat Simple_repeat 3 106 0 2024 106 0 7 chr6 68178280 68178564 -121100990 - AluSc SINE Alu -27 282 1 23 0 0 0 chr6 68178570 68178593 -121100961 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 68178972 68178993 -121100561 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 68179229 68179254 -121100300 + AT_rich Low_complexity Low_complexity 1 25 0 255 214 114 14 chr6 68179724 68179794 -121099760 - HAL1 LINE L1 0 2507 2431 269 67 0 22 chr6 68180263 68180308 -121099246 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 327 247 234 51 chr6 68180486 68180644 -121098910 - MIR SINE MIR -72 190 4 655 72 18 27 chr6 68180973 68181084 -121098470 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 700 255 56 10 chr6 68181114 68181310 -121098244 - MIR SINE MIR -10 252 48 532 356 74 13 chr6 68181322 68181701 -121097853 + L3 LINE CR1 795 1196 -381 * 852 281 56 84 chr6 68181699 68182298 -121097256 + L2 LINE L2 2737 3313 0 379 307 268 19 chr6 68182282 68182595 -121096959 + L3 LINE CR1 1186 1576 -1 * 203 217 43 0 chr6 68182661 68182707 -121096847 - MIR3 SINE MIR -6 202 155 360 336 10 0 chr6 68182799 68182903 -121096651 - L2 LINE L2 -2 3311 3207 203 211 70 0 chr6 68182935 68182992 -121096562 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 244 344 38 8 chr6 68184007 68184138 -121095416 + MER20B DNA MER1_type 647 781 -2 245 347 42 11 chr6 68184220 68184315 -121095239 + MIR SINE MIR 49 146 -116 295 239 112 21 chr6 68184471 68184659 -121094895 - MER20B DNA MER1_type -64 719 515 23 0 0 0 chr6 68186738 68186761 -121092793 + AT_rich Low_complexity Low_complexity 1 23 0 378 368 57 69 chr6 68188631 68189284 -121090270 + L1MEc LINE L1 95 739 -5657 2464 50 0 10 chr6 68189735 68190038 -121089516 - AluY SINE Alu -10 301 2 183 417 25 12 chr6 68191598 68191761 -121087793 - L2 LINE L2 -347 2967 2803 250 221 125 39 chr6 68191880 68191984 -121087570 + L2 LINE L2 3194 3306 -7 236 357 143 17 chr6 68195673 68195973 -121083581 + L3 LINE CR1 1222 1559 -18 216 263 18 0 chr6 68197249 68197306 -121082248 - MIR SINE MIR -6 256 199 790 169 19 0 chr6 68200013 68200167 -121079387 - L1MA6 LINE L1 0 6300 6144 1800 123 0 11 chr6 68200423 68200683 -121078871 + AluSx SINE Alu 44 300 -12 279 0 0 0 chr6 68201789 68201820 -121077734 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 912 129 0 0 chr6 68201820 68201952 -121077602 - AluY SINE Alu -179 132 1 21 36 0 0 chr6 68202155 68202183 -121077371 + AT_rich Low_complexity Low_complexity 1 28 0 188 33 0 33 chr6 68203720 68203750 -121075804 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 21 95 0 0 chr6 68204962 68205025 -121074529 + AT_rich Low_complexity Low_complexity 1 63 0 207 330 11 44 chr6 68205846 68205937 -121073617 + L3 LINE CR1 1432 1519 -58 21 0 0 0 chr6 68206877 68206898 -121072656 + AT_rich Low_complexity Low_complexity 1 21 0 316 265 49 0 chr6 68206938 68207040 -121072514 + MIR SINE MIR 136 242 -20 234 167 133 17 chr6 68207404 68207464 -121072090 - HSMAR1 DNA Mariner 0 1287 1221 297 0 0 0 chr6 68208762 68208795 -121070759 + (CA)n Simple_repeat Simple_repeat 2 34 0 186 348 0 56 chr6 68210676 68210765 -121068789 + L2 LINE L2 3188 3271 -1 13997 149 24 6 chr6 68211117 68213480 -121066074 + Tigger1 DNA MER2_type 1 2406 -12 1768 158 85 0 chr6 68213680 68214008 -121065546 - MER47A DNA MER2_type 0 366 11 21 0 0 0 chr6 68214170 68214191 -121065363 + AT_rich Low_complexity Low_complexity 1 21 0 185 108 27 0 chr6 68214697 68214734 -121064820 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 733 249 28 52 chr6 68214742 68214955 -121064599 + MIR SINE MIR 54 261 -1 243 326 76 49 chr6 68215616 68215760 -121063794 - L2 LINE L2 -583 2731 2584 238 308 75 45 chr6 68216177 68216310 -121063244 - L2 LINE L2 -793 2521 2385 26 0 0 0 chr6 68216792 68216818 -121062736 + AT_rich Low_complexity Low_complexity 1 26 0 3765 147 30 55 chr6 68217185 68217691 -121061863 - L1MA4 LINE L1 -2 6298 5818 2407 75 3 0 chr6 68217691 68217999 -121061555 - AluY SINE Alu -2 309 1 3765 147 30 55 chr6 68217999 68218294 -121061260 - L1MA4 LINE L1 -482 5818 5517 21 0 0 0 chr6 68219115 68219136 -121060418 + AT_rich Low_complexity Low_complexity 1 21 0 1238 257 75 0 chr6 68219177 68219484 -121060070 + MER58B DNA MER1_type 1 330 -11 34 42 0 0 chr6 68220028 68220076 -121059478 + AT_rich Low_complexity Low_complexity 1 48 0 27 29 0 0 chr6 68220215 68220249 -121059305 + AT_rich Low_complexity Low_complexity 1 34 0 1312 277 78 41 chr6 68220338 68221308 -121058246 - L2 LINE L2 -1 3312 2319 273 295 78 56 chr6 68221430 68221661 -121057893 - MIR SINE MIR -2 260 32 372 59 0 0 chr6 68223094 68223145 -121056409 + (T)n Simple_repeat Simple_repeat 1 51 0 222 37 0 0 chr6 68223145 68223172 -121056382 + (TG)n Simple_repeat Simple_repeat 2 28 0 22 56 0 0 chr6 68225112 68225148 -121054406 + AT_rich Low_complexity Low_complexity 1 36 0 294 73 0 0 chr6 68227944 68227985 -121051569 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 57 0 0 chr6 68228398 68228433 -121051121 + AT_rich Low_complexity Low_complexity 1 35 0 2030 131 7 0 chr6 68229827 68230110 -121049444 + AluSq SINE Alu 1 285 -28 270 0 0 0 chr6 68230110 68230140 -121049414 + (CAAAT)n Simple_repeat Simple_repeat 2 31 0 342 0 0 0 chr6 68230474 68230512 -121049042 + (CA)n Simple_repeat Simple_repeat 2 39 0 495 278 79 72 chr6 68230771 68231315 -121048239 + L1MEd LINE L1 679 1226 -4979 345 256 102 45 chr6 68231402 68231648 -121047906 + L1MEd LINE L1 1564 1823 -4573 824 254 62 5 chr6 68231892 68232101 -121047453 - MER58A DNA MER1_type -3 221 1 1424 187 33 15 chr6 68232231 68232504 -121047050 + AluJo SINE Alu 1 278 -34 360 282 80 46 chr6 68232651 68233087 -121046467 + L1MEd LINE L1 2323 2773 -3442 1066 113 25 0 chr6 68233092 68233251 -121046303 - THE1B LTR MaLR 0 364 202 1157 305 73 8 chr6 68234169 68234661 -121044893 - L2 LINE L2 -316 2997 2477 2081 168 69 5 chr6 68234661 68235054 -121044500 - MSTB LTR MaLR 0 426 9 435 340 122 8 chr6 68235079 68235317 -121044237 - L2 LINE L2 -870 2444 2180 377 348 38 22 chr6 68235748 68235932 -121043622 + L3b LINE CR1 1324 1510 -73 325 268 80 41 chr6 68236646 68236916 -121042638 + L1ME3A LINE L1 5368 5650 -514 246 254 27 9 chr6 68237101 68237211 -121042343 + L1ME3A LINE L1 5838 5949 -221 195 42 0 0 chr6 68237785 68237809 -121041745 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 251 278 14 0 chr6 68238067 68238139 -121041415 + MLT1J LTR MaLR 117 189 -322 513 160 0 0 chr6 68238223 68238329 -121041225 + GA-rich Low_complexity Low_complexity 1 106 0 362 339 40 77 chr6 68238573 68238821 -121040733 + L2 LINE L2 2567 2805 -509 206 325 111 0 chr6 68238836 68238962 -121040592 + MIR SINE MIR 123 262 0 29384 47 2 1 chr6 68240606 68246751 -121032803 - L1PA4 LINE L1 -3 6152 4 2256 109 0 3 chr6 68248455 68248766 -121030788 + AluSx SINE Alu 1 310 -2 1645 206 63 38 chr6 68250864 68251262 -121028292 - MLT1D LTR MaLR -91 414 7 382 221 57 8 chr6 68251278 68251400 -121028154 + LTR16A1 LTR ERVL 330 457 0 1473 12 0 0 chr6 68251961 68252130 -121027424 + L1HS LINE L1 5987 6155 0 186 43 0 0 chr6 68252163 68252186 -121027368 + (A)n Simple_repeat Simple_repeat 1 23 0 832 210 20 41 chr6 68252643 68252838 -121026716 - MER20 DNA MER1_type 0 219 29 394 323 68 81 chr6 68252860 68253390 -121026164 + HAL1 LINE L1 975 1497 -1010 327 333 76 0 chr6 68253414 68253558 -121025996 + HAL1 LINE L1 1543 1697 -810 28 48 0 0 chr6 68253861 68253903 -121025651 + AT_rich Low_complexity Low_complexity 1 42 0 1097 265 179 21 chr6 68253980 68254494 -121025060 - MLT1G1 LTR MaLR 0 595 1 1834 226 69 49 chr6 68255096 68255262 -121024292 + MLT1E2 LTR MaLR 5 166 -460 2530 114 11 3 chr6 68255262 68255622 -121023932 + THE1B LTR MaLR 2 364 0 1834 226 69 49 chr6 68255622 68256068 -121023486 + MLT1E2 LTR MaLR 166 626 0 208 245 0 20 chr6 68257317 68257366 -121022188 + CT-rich Low_complexity Low_complexity 3 50 0 2381 58 0 35 chr6 68258031 68258344 -121021210 - AluY SINE Alu -3 308 7 361 230 118 30 chr6 68259270 68259405 -121020149 + MER103 DNA DNA 20 166 0 1986 109 31 24 chr6 68259768 68260062 -121019492 - AluSx SINE Alu -8 304 9 700 246 117 99 chr6 68260536 68261140 -121018414 - Charlie7 DNA MER1_type 0 2612 1981 632 94 10 0 chr6 68261140 68261236 -121018318 - L1PB1 LINE L1 -1 6150 6054 700 246 117 99 chr6 68261236 68261624 -121017930 - Charlie7 DNA MER1_type -631 1981 1602 832 297 68 63 chr6 68261915 68262605 -121016949 - L1ME3A LINE L1 -225 5945 5257 2326 25 43 0 chr6 68262607 68262886 -121016668 + AluY SINE Alu 10 300 -11 375 302 17 9 chr6 68263040 68263156 -121016398 - Charlie7 DNA MER1_type -1009 1603 1487 30 27 0 0 chr6 68263309 68263346 -121016208 + AT_rich Low_complexity Low_complexity 1 37 0 576 213 100 63 chr6 68263497 68263736 -121015818 + Charlie2 DNA MER1_type 61 308 -2554 1363 166 67 20 chr6 68263877 68264130 -121015424 + AluJb SINE Alu 1 265 -47 434 269 81 37 chr6 68264189 68264460 -121015094 + Charlie2 DNA MER1_type 2015 2297 -565 733 268 111 7 chr6 68264511 68264926 -121014628 + Charlie2 DNA MER1_type 2393 2850 -12 26 0 0 0 chr6 68265332 68265358 -121014196 + AT_rich Low_complexity Low_complexity 1 26 0 1766 160 42 8 chr6 68265793 68266150 -121013404 + L1MB7 LINE L1 5816 6184 0 202 294 15 15 chr6 68266338 68266406 -121013148 - MIR SINE MIR -107 155 88 1426 122 36 0 chr6 68266427 68266649 -121012905 + MER30 DNA MER1_type 1 230 0 694 308 39 80 chr6 68267593 68268083 -121011471 + L2 LINE L2 2844 3313 0 223 333 137 0 chr6 68269459 68269561 -121009993 - MIR SINE MIR -30 232 117 21 36 0 0 chr6 68269835 68269863 -121009691 + AT_rich Low_complexity Low_complexity 1 28 0 428 303 78 23 chr6 68270475 68270693 -121008861 + L2 LINE L2 2627 2856 -458 286 345 210 0 chr6 68270935 68271135 -121008419 - MIR SINE MIR -1 261 20 585 213 124 30 chr6 68271303 68271472 -121008082 + MIR SINE MIR 2 186 -76 987 203 47 91 chr6 68273347 68273732 -121005822 - MER110A LTR ERV1 0 491 139 2251 111 0 3 chr6 68273846 68274152 -121005402 + AluSg SINE Alu 1 305 -5 1591 276 56 67 chr6 68277046 68277809 -121001745 - MER21B LTR ERV1 -108 755 1 1479 187 57 49 chr6 68278234 68278640 -121000914 + LTR37A LTR ERV1 18 426 0 22 35 0 0 chr6 68278817 68278846 -121000708 + AT_rich Low_complexity Low_complexity 1 29 0 241 247 41 41 chr6 68278996 68279069 -121000485 + L2 LINE L2 2205 2277 -1037 1607 293 89 3 chr6 68279071 68279658 -120999896 - L2 LINE L2 -859 2455 1819 754 156 0 33 chr6 68279662 68279784 -120999770 + AluSq/x SINE Alu 7 124 -188 490 29 29 0 chr6 68279785 68279853 -120999701 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 852 313 140 17 chr6 68279877 68280485 -120999069 + L2 LINE L2 2617 3303 -10 2298 104 0 0 chr6 68280555 68280863 -120998691 + AluY SINE Alu 1 308 -3 282 291 29 0 chr6 68280979 68281082 -120998472 + L1ME LINE L1 5617 5722 -399 698 274 105 43 chr6 68281589 68282008 -120997546 - L1ME4a LINE L1 -224 5897 5453 358 262 104 24 chr6 68282019 68282183 -120997371 - L1ME4a LINE L1 -748 5398 5222 567 311 210 5 chr6 68282234 68282658 -120996896 + L2 LINE L2 773 1283 -2031 28 0 0 0 chr6 68283508 68283536 -120996018 + AT_rich Low_complexity Low_complexity 1 28 0 192 340 75 9 chr6 68283833 68283939 -120995615 - MIR SINE MIR -64 198 86 2094 91 0 32 chr6 68284369 68284677 -120994877 - AluY SINE Alu -13 298 1 26 50 0 0 chr6 68285197 68285237 -120994317 + AT_rich Low_complexity Low_complexity 1 40 0 310 350 45 38 chr6 68285364 68285521 -120994033 + L2 LINE L2 3111 3268 -4 186 43 0 0 chr6 68286785 68286808 -120992746 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 198 0 0 0 chr6 68287739 68287761 -120991793 + (T)n Simple_repeat Simple_repeat 1 22 0 305 81 0 135 chr6 68288555 68288629 -120990925 - L1MB3 LINE L1 -3 6180 6117 4042 248 83 36 chr6 68288644 68289145 -120990409 + L1M4 LINE L1 2410 2886 -3260 541 259 0 8 chr6 68289145 68289276 -120990278 - FLAM_A SINE Alu -2 131 2 4042 248 83 36 chr6 68289276 68289721 -120989833 + L1M4 LINE L1 2886 3308 -2838 2112 96 3 26 chr6 68289721 68290023 -120989531 - AluSp SINE Alu -18 295 1 4042 248 83 36 chr6 68290023 68290841 -120988713 + L1M4 LINE L1 3308 4259 -1887 2217 112 0 0 chr6 68290878 68291165 -120988389 - AluSc SINE Alu -20 289 3 213 373 31 37 chr6 68291525 68291686 -120987868 - L2 LINE L2 -187 3085 2926 460 330 78 80 chr6 68292055 68292847 -120986707 + L2 LINE L2 1680 2470 -844 196 422 7 7 chr6 68293131 68293266 -120986288 + L2 LINE L2 2730 2864 -450 303 329 103 51 chr6 68293363 68293597 -120985957 - L2 LINE L2 0 3272 3027 1515 165 26 88 chr6 68293604 68293992 -120985562 + MLT1A1 LTR MaLR 1 364 -1 181 392 165 0 chr6 68294467 68294564 -120984990 + L2 LINE L2 3137 3249 -23 303 373 30 30 chr6 68294599 68294800 -120984754 - L2 LINE L2 -918 2396 2196 741 185 0 0 chr6 68294994 68295113 -120984441 + FLAM_C SINE Alu 5 123 -20 2250 75 0 0 chr6 68295604 68295949 -120983605 + AluY SINE Alu 1 345 0 318 247 11 22 chr6 68296594 68296683 -120982871 + L1MC4 LINE L1 6616 6703 -1339 349 368 30 6 chr6 68296780 68296946 -120982608 - L2 LINE L2 -231 3041 2872 216 0 0 0 chr6 68297033 68297057 -120982497 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1693 191 37 57 chr6 68297203 68297605 -120981949 + MLT1C LTR MaLR 74 467 0 25 0 0 0 chr6 68297721 68297746 -120981808 + AT_rich Low_complexity Low_complexity 1 25 0 402 196 78 10 chr6 68297746 68297801 -120981753 - L1MA9 LINE L1 -22 6290 6240 180 111 0 0 chr6 68297801 68297828 -120981726 + (TA)n Simple_repeat Simple_repeat 1 27 0 402 196 78 10 chr6 68297828 68297874 -120981680 - L1MA9 LINE L1 -72 6240 6182 3879 167 33 0 chr6 68297879 68298578 -120980976 - L1MA9 LINE L1 -232 6080 5359 3403 204 35 11 chr6 68298576 68299372 -120980182 + L1 LINE L1 4583 5397 -749 * 213 39 0 0 chr6 68299460 68299486 -120980068 + (T)n Simple_repeat Simple_repeat 1 26 0 242 228 82 134 chr6 68300054 68300225 -120979329 + L2 LINE L2 3149 3310 -3 1327 240 37 91 chr6 68300681 68300707 -120978847 - MLT1F1 LTR MaLR -12 555 529 1119 189 74 74 chr6 68300707 68301072 -120978482 + MLT1A1 LTR MaLR 1 365 0 1327 240 37 91 chr6 68301072 68301562 -120977992 - MLT1F1 LTR MaLR -38 529 67 572 290 61 75 chr6 68301889 68302330 -120977224 - L1MEd LINE L1 -5041 1078 644 435 38 0 0 chr6 68302472 68302525 -120977029 + (TATCG)n Simple_repeat Simple_repeat 3 55 0 2038 110 7 0 chr6 68302525 68302807 -120976747 - AluSg1 SINE Alu -25 284 1 315 307 63 59 chr6 68302937 68303175 -120976379 - L1MEd LINE L1 -5779 340 102 23 0 0 0 chr6 68304324 68304347 -120975207 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr6 68305731 68305769 -120973785 + AT_rich Low_complexity Low_complexity 1 38 0 196 318 56 65 chr6 68305821 68305928 -120973626 - L2 LINE L2 -5 3308 3203 615 310 125 4 chr6 68305940 68306172 -120973382 - MIR SINE MIR -1 261 2 368 343 53 6 chr6 68306517 68306686 -120972868 - MIR SINE MIR -71 191 15 369 247 16 186 chr6 68307326 68307573 -120971981 - MIR SINE MIR -50 212 8 667 254 6 12 chr6 68308480 68308649 -120970905 + FAM SINE Alu 1 168 -7 291 114 0 0 chr6 68308656 68308700 -120970854 + (TTA)n Simple_repeat Simple_repeat 2 45 0 469 218 63 69 chr6 68309916 68310090 -120969464 - MER5B DNA MER1_type -1 177 5 216 0 0 0 chr6 68310889 68310913 -120968641 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 199 308 220 0 chr6 68311328 68311419 -120968135 - L2 LINE L2 -13 3300 3190 22 56 0 0 chr6 68316203 68316239 -120963315 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr6 68319564 68319594 -120959960 + AT_rich Low_complexity Low_complexity 1 30 0 550 296 6 3 chr6 68322479 68322650 -120956904 + MIR SINE MIR 17 184 -65 983 189 11 0 chr6 68322653 68322828 -120956726 - MER45A DNA AcHobo 0 178 2 607 271 133 64 chr6 68322903 68323390 -120956164 - LTR33 LTR ERVL 0 521 1 293 248 257 0 chr6 68324484 68324585 -120954969 + MIR SINE MIR 28 154 -108 233 188 257 49 chr6 68324741 68324885 -120954669 - L3 LINE CR1 -1115 462 289 1293 248 106 10 chr6 68325772 68326176 -120953378 - MSTB2 LTR MaLR 0 457 15 1429 163 4 8 chr6 68326391 68326637 -120952917 - Tigger3(Golem) DNA MER2_type -1 3028 2784 766 186 50 19 chr6 68326613 68326774 -120952780 - Tigger3(Golem) DNA MER2_type -2854 175 10 * 442 332 61 8 chr6 68326833 68327080 -120952474 - MIR SINE MIR 0 262 3 269 261 0 15 chr6 68327275 68327340 -120952214 - L2 LINE L2 0 3272 3209 301 339 63 8 chr6 68328426 68328553 -120951001 - MIR SINE MIR -57 151 18 1482 199 7 0 chr6 68330132 68330408 -120949146 - AluJb SINE Alu -24 288 11 373 224 42 56 chr6 68330445 68330588 -120948966 + MER103 DNA DNA 1 141 -25 267 286 157 49 chr6 68330723 68331149 -120948405 - L1ME4a LINE L1 -58 6063 5592 3387 54 52 17 chr6 68331267 68331729 -120947825 - L1PA8 LINE L1 -4 6168 5691 2108 130 3 0 chr6 68332374 68332682 -120946872 + AluSq SINE Alu 1 309 -4 437 259 37 19 chr6 68332852 68333014 -120946540 - HsTC2 DNA Tc2 -1006 892 728 28 61 0 0 chr6 68333556 68333605 -120945949 + AT_rich Low_complexity Low_complexity 1 49 0 2393 245 67 29 chr6 68333729 68334487 -120945067 + L1ME1 LINE L1 5360 6146 -20 673 200 0 0 chr6 68335014 68335134 -120944420 - FRAM SINE Alu -17 159 40 215 132 38 0 chr6 68335147 68335200 -120944354 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 436 243 62 21 chr6 68335744 68335888 -120943666 - MER97b DNA MER1_type? -3 1050 901 195 204 0 0 chr6 68335894 68335938 -120943616 + (TA)n Simple_repeat Simple_repeat 2 45 0 22 35 0 0 chr6 68336413 68336442 -120943112 + AT_rich Low_complexity Low_complexity 1 29 0 708 223 40 17 chr6 68336456 68336631 -120942923 + MER97c DNA MER1_type? 394 572 -518 * 1686 215 20 3 chr6 68336624 68336982 -120942572 - MER97a DNA MER1_type? -530 364 1 339 169 0 0 chr6 68337037 68337108 -120942446 + GA-rich Low_complexity Low_complexity 1 71 0 882 19 0 0 chr6 68337169 68337273 -120942281 + (TTTTA)n Simple_repeat Simple_repeat 3 106 0 2024 106 0 7 chr6 68337278 68337562 -120941992 - AluSc SINE Alu -27 282 1 23 0 0 0 chr6 68337568 68337591 -120941963 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 68337970 68337991 -120941563 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 68338227 68338252 -120941302 + AT_rich Low_complexity Low_complexity 1 25 0 255 214 114 14 chr6 68338722 68338792 -120940762 - HAL1 LINE L1 0 2507 2431 269 67 0 22 chr6 68339261 68339306 -120940248 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 327 247 234 51 chr6 68339484 68339642 -120939912 - MIR SINE MIR -72 190 4 655 72 18 27 chr6 68339971 68340082 -120939472 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 700 255 56 10 chr6 68340112 68340308 -120939246 - MIR SINE MIR -10 252 48 532 356 74 13 chr6 68340320 68340699 -120938855 + L3 LINE CR1 795 1196 -381 * 852 281 56 84 chr6 68340697 68341296 -120938258 + L2 LINE L2 2737 3313 0 379 307 268 19 chr6 68341280 68341593 -120937961 + L3 LINE CR1 1186 1576 -1 * 203 217 43 0 chr6 68341659 68341705 -120937849 - MIR3 SINE MIR -6 202 155 360 336 10 0 chr6 68341797 68341901 -120937653 - L2 LINE L2 -2 3311 3207 203 211 70 0 chr6 68341933 68341990 -120937564 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 244 344 38 8 chr6 68343005 68343136 -120936418 + MER20B DNA MER1_type 647 781 -2 245 347 42 11 chr6 68343218 68343313 -120936241 + MIR SINE MIR 49 146 -116 295 239 112 21 chr6 68343469 68343657 -120935897 - MER20B DNA MER1_type -64 719 515 23 0 0 0 chr6 68345735 68345758 -120933796 + AT_rich Low_complexity Low_complexity 1 23 0 232 302 58 0 chr6 68348374 68348460 -120931094 + L1ME2 LINE L1 1434 1524 -5335 336 24 0 0 chr6 68348468 68348509 -120931045 + (TC)n Simple_repeat Simple_repeat 2 42 0 1541 191 27 64 chr6 68348509 68348784 -120930770 + MLT1B LTR MaLR 2 259 -131 243 0 0 0 chr6 68348784 68348811 -120930743 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 1541 191 27 64 chr6 68348811 68348939 -120930615 + MLT1B LTR MaLR 259 390 0 344 292 86 51 chr6 68348957 68349181 -120930373 + L1ME2 LINE L1 1817 2032 -4925 1795 173 9 24 chr6 68349181 68349522 -120930032 - MER1B DNA MER1_type 0 337 2 344 292 86 51 chr6 68349522 68349728 -120929826 + L1ME2 LINE L1 2032 2262 -4695 1218 261 93 18 chr6 68349897 68350350 -120929204 + L1ME2 LINE L1 4808 5294 -1663 446 253 65 61 chr6 68350362 68350710 -120928844 + L1ME2 LINE L1 5954 6319 -654 1669 175 29 0 chr6 68350799 68351079 -120928475 + AluJo SINE Alu 3 290 -22 181 83 12 119 chr6 68351103 68351187 -120928367 + (TAAAAA)n Simple_repeat Simple_repeat 2 76 0 432 240 20 59 chr6 68351193 68351494 -120928060 + L1ME2 LINE L1 6504 6949 -26 7119 108 19 5 chr6 68351754 68352900 -120926654 + L1MA1 LINE L1 5141 6302 0 22 0 0 0 chr6 68352900 68352922 -120926632 + AT_rich Low_complexity Low_complexity 1 22 0 548 110 0 11 chr6 68352985 68353076 -120926478 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 853 192 0 0 chr6 68353203 68353359 -120926195 + AluJb SINE Alu 144 299 -13 426 69 0 0 chr6 68353748 68353806 -120925748 + (TG)n Simple_repeat Simple_repeat 2 59 0 1976 135 0 16 chr6 68355310 68355613 -120923941 - AluSq SINE Alu -15 298 1 1722 183 0 16 chr6 68357274 68357580 -120921974 - AluJo SINE Alu -8 304 4 336 289 78 21 chr6 68358375 68358517 -120921037 - HAL1 LINE L1 -632 1875 1726 2197 278 126 34 chr6 68358528 68359688 -120919866 - HAL1 LINE L1 -1032 1475 209 397 305 35 7 chr6 68361089 68361230 -120918324 - L2 LINE L2 -4 3309 3165 680 249 93 35 chr6 68363069 68363326 -120916228 + MER90 LTR ERV1 342 613 -1 226 371 11 11 chr6 68363504 68363593 -120915961 + MIR SINE MIR 32 120 -88 225 227 13 13 chr6 68363656 68363731 -120915823 + (TTTA)n Simple_repeat Simple_repeat 3 77 0 22 0 0 0 chr6 68365048 68365070 -120914484 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 68367540 68367566 -120911988 + AT_rich Low_complexity Low_complexity 1 26 0 26 50 0 0 chr6 68367818 68367858 -120911696 + AT_rich Low_complexity Low_complexity 1 40 0 705 302 50 0 chr6 68367934 68368176 -120911378 - MER46C DNA MER2_type -83 255 2 449 235 27 74 chr6 68368279 68368428 -120911126 + MIR SINE MIR 91 232 -30 400 175 0 82 chr6 68368911 68369008 -120910546 + AluJo SINE Alu 127 215 -97 23 0 0 0 chr6 68369010 68369033 -120910521 + AT_rich Low_complexity Low_complexity 1 23 0 321 26 0 0 chr6 68369656 68369694 -120909860 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1748 179 3 0 chr6 68369698 68369988 -120909566 + AluJb SINE Alu 5 295 -17 433 121 24 0 chr6 68371417 68371500 -120908054 + (TCTA)n Simple_repeat Simple_repeat 1 85 0 332 275 114 30 chr6 68371514 68371681 -120907873 - L3 LINE CR1 -205 1372 1192 283 139 0 0 chr6 68371810 68371853 -120907701 - MER103 DNA DNA -47 119 77 27 29 0 0 chr6 68371853 68371887 -120907667 + AT_rich Low_complexity Low_complexity 1 34 0 221 56 0 28 chr6 68372636 68372672 -120906882 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 7214 41 0 1 chr6 68372672 68373550 -120906004 - L1PA4 LINE L1 -24 6131 5255 198 0 0 0 chr6 68373577 68373599 -120905955 + (CA)n Simple_repeat Simple_repeat 2 23 0 264 333 26 39 chr6 68373756 68373912 -120905642 + MIR SINE MIR 18 171 -91 403 305 91 41 chr6 68374205 68374569 -120904985 - L3 LINE CR1 -572 1005 624 2279 104 0 10 chr6 68375256 68375564 -120903990 - AluSq SINE Alu -8 305 1 33 56 0 0 chr6 68376210 68376264 -120903290 + AT_rich Low_complexity Low_complexity 1 54 0 452 264 87 50 chr6 68376437 68376610 -120902944 + L1ME4a LINE L1 5637 5827 -294 2318 65 7 0 chr6 68376610 68376904 -120902650 - AluY SINE Alu -15 296 1 452 264 87 50 chr6 68376904 68377029 -120902525 + L1ME4a LINE L1 5827 5946 -175 183 42 0 0 chr6 68377253 68377277 -120902277 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 519 113 0 0 chr6 68378693 68378773 -120900781 + (GA)n Simple_repeat Simple_repeat 2 81 0 298 254 0 0 chr6 68378919 68378986 -120900568 - MIR SINE MIR -11 251 185 428 221 6 104 chr6 68379414 68379669 -120899885 + MER20 DNA MER1_type 2 219 0 212 184 20 0 chr6 68380781 68380830 -120898724 + (TA)n Simple_repeat Simple_repeat 2 51 0 6274 157 3 8 chr6 68381488 68382532 -120897022 + L1PA8A LINE L1 3 1041 -4834 13667 109 11 1 chr6 68382532 68385009 -120894545 + L1PA8A LINE L1 3643 6175 -440 1092 100 6 0 chr6 68385009 68385167 -120894387 + L1PA8 LINE L1 6316 6476 -11 1186 247 92 43 chr6 68385869 68386314 -120893240 - MLT1C LTR MaLR 0 467 1 1345 277 32 93 chr6 68386337 68387024 -120892530 - MLT2F LTR ERVL -18 645 1 2131 100 6 34 chr6 68387086 68387406 -120892148 - AluSq SINE Alu -1 312 2 401 56 0 0 chr6 68387624 68387678 -120891876 - MADE1 DNA Mariner 0 80 27 3450 247 80 25 chr6 68387683 68388729 -120890825 - ERVL-F LTR ERVL -321 5443 4340 1423 275 139 13 chr6 68388771 68389309 -120890245 - MLT2F LTR ERVL -55 608 3 286 320 183 0 chr6 68389538 68389691 -120889863 + MIR3 SINE MIR 19 199 -9 2027 151 136 0 chr6 68390491 68390889 -120888665 - LTR47A LTR ERVL 0 452 1 254 242 32 0 chr6 68390971 68391033 -120888521 + CT-rich Low_complexity Low_complexity 3 66 0 1696 182 40 71 chr6 68392101 68392496 -120887058 + MLT1B LTR MaLR 1 383 -7 2489 66 0 0 chr6 68392503 68392807 -120886747 + AluY SINE Alu 8 311 0 2447 34 0 0 chr6 68393619 68393911 -120885643 + L1PA3 LINE L1 5863 6154 -1 30 27 0 0 chr6 68395491 68395528 -120884026 + AT_rich Low_complexity Low_complexity 1 37 0 362 243 23 9 chr6 68396445 68396553 -120883001 + L1ME1 LINE L1 6060 6157 -9 201 161 0 0 chr6 68396799 68396830 -120882724 - L2 LINE L2 -13 3300 3270 218 282 49 86 chr6 68397070 68397233 -120882321 - L2 LINE L2 -237 3035 2879 405 280 32 48 chr6 68397265 68397451 -120882103 + MER115 DNA AcHobo 499 681 -12 2464 50 0 10 chr6 68397856 68398159 -120881395 - AluY SINE Alu -10 301 2 183 417 25 12 chr6 68399719 68399882 -120879672 - L2 LINE L2 -347 2967 2803 250 221 125 39 chr6 68400001 68400105 -120879449 + L2 LINE L2 3194 3306 -7 200 214 51 0 chr6 68453459 68453557 -120825997 + (TA)n Simple_repeat Simple_repeat 2 104 0 2256 112 3 0 chr6 68453860 68454163 -120825391 + AluSp SINE Alu 1 304 -9 200 169 0 51 chr6 68454845 68454904 -120824650 + T-rich Low_complexity Low_complexity 3 58 0 * 459 73 0 0 chr6 68454899 68454967 -120824587 + (TC)n Simple_repeat Simple_repeat 1 68 0 2310 143 49 3 chr6 68455618 68456004 -120823550 + MER65A LTR ERV1 42 445 0 378 250 88 0 chr6 68456465 68456545 -120823009 - MER81 DNA DNA -27 87 1 1316 143 37 25 chr6 68457063 68457308 -120822246 - MSTA LTR MaLR 0 428 181 22 35 0 0 chr6 68457916 68457945 -120821609 + AT_rich Low_complexity Low_complexity 1 29 0 294 250 40 30 chr6 68458535 68458635 -120820919 - ERVL LTR ERVL -436 5328 5228 2364 72 3 3 chr6 68458890 68459195 -120820359 - AluY SINE Alu 0 311 7 400 275 44 48 chr6 68461455 68461673 -120817881 + MIR SINE MIR 2 216 -46 245 391 0 0 chr6 68462739 68462826 -120816728 - L2 LINE L2 -50 3222 3136 349 210 34 28 chr6 68463028 68463204 -120816350 + (TA)n Simple_repeat Simple_repeat 2 178 0 618 289 66 27 chr6 68463807 68464108 -120815446 + HsTC2 DNA Tc2 1 313 -1585 696 205 16 5 chr6 68464111 68464296 -120815258 + HsTC2 DNA Tc2 1706 1892 -6 263 379 87 19 chr6 68464753 68464914 -120814640 - L2 LINE L2 0 3272 3101 29 0 0 0 chr6 68465163 68465192 -120814362 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 68465258 68465281 -120814273 + AT_rich Low_complexity Low_complexity 1 23 0 291 371 86 21 chr6 68465426 68465612 -120813942 + L2 LINE L2 3075 3272 0 217 258 233 17 chr6 68466396 68466516 -120813038 + L2 LINE L2 3167 3312 -1 236 250 0 14 chr6 68466751 68466823 -120812731 + (CATATA)n Simple_repeat Simple_repeat 3 73 0 4253 197 23 26 chr6 68466868 68468306 -120811248 - L1MB7 LINE L1 -16 6168 4739 1976 138 0 10 chr6 68468306 68468610 -120810944 + AluSx SINE Alu 1 301 -11 4253 197 23 26 chr6 68468610 68469078 -120810476 - L1MB7 LINE L1 -1445 4739 4271 264 336 11 48 chr6 68469118 68469454 -120810100 - L1MC/D LINE L1 -340 5822 5559 2295 67 0 14 chr6 68469508 68469805 -120809749 + AluY SINE Alu 1 293 -18 254 367 70 32 chr6 68470758 68470916 -120808638 - L2 LINE L2 -1 3271 3108 941 145 55 145 chr6 68471192 68471481 -120808073 + MER7A DNA MER2_type 1 261 -85 261 254 0 0 chr6 68471678 68471733 -120807821 + MER7A DNA MER2_type 289 343 -3 374 336 119 20 chr6 68471913 68472208 -120807346 - L1MC/D LINE L1 -2164 5644 5321 21 57 0 0 chr6 68472307 68472342 -120807212 + AT_rich Low_complexity Low_complexity 1 35 0 303 315 176 20 chr6 68472357 68472703 -120806851 - L1MC/D LINE L1 -1013 5133 4734 327 393 7 7 chr6 68473756 68473896 -120805658 + MER115 DNA AcHobo 229 368 -325 225 344 90 49 chr6 68476501 68476745 -120802809 - L2 LINE L2 -2 3270 3017 2061 134 32 32 chr6 68477039 68477412 -120802142 - THE1C LTR MaLR -2 373 1 2374 128 48 0 chr6 68477488 68477902 -120801652 - L1MC3 LINE L1 -9 7776 7343 241 326 73 67 chr6 68478284 68478600 -120800954 + L2 LINE L2 2995 3312 -1 354 278 0 0 chr6 68479082 68479172 -120800382 - L1MC4 LINE L1 -1339 6703 6614 189 147 0 0 chr6 68479175 68479209 -120800345 + (TA)n Simple_repeat Simple_repeat 1 34 0 16655 162 20 29 chr6 68479387 68483572 -120795982 - L1MA3 LINE L1 0 7724 3502 2846 10 0 0 chr6 68483572 68483882 -120795672 - AluY SINE Alu -1 310 1 16655 162 20 29 chr6 68483882 68484788 -120794766 - L1MA3 LINE L1 -4222 3502 2589 1976 147 124 18 chr6 68484788 68485175 -120794379 - MSTA LTR MaLR 0 428 1 16655 162 20 29 chr6 68485175 68485255 -120794299 - L1MA3 LINE L1 -5135 2589 2510 9276 147 10 36 chr6 68485255 68486875 -120792679 - MSTA-int LTR MaLR 0 1580 3 1956 146 131 13 chr6 68486877 68487260 -120792294 - MSTA LTR MaLR 0 428 1 16655 162 20 29 chr6 68487260 68489150 -120790404 - L1MA3 LINE L1 -5215 2509 723 2224 113 0 0 chr6 68489151 68489442 -120790112 - AluSx SINE Alu -13 299 9 676 153 76 0 chr6 68489449 68489567 -120789987 - THE1-int LTR MaLR -1170 410 284 3722 171 6 92 chr6 68489578 68490360 -120789194 - L1MA3 LINE L1 -6831 734 20 1109 351 46 38 chr6 68490998 68491720 -120787834 - L2 LINE L2 -263 3050 2319 1149 196 20 22 chr6 68492059 68492366 -120787188 + L1MD3 LINE L1 7512 7995 0 229 211 0 39 chr6 68492919 68492971 -120786583 - MLT1K LTR MaLR -355 233 184 292 260 61 39 chr6 68493160 68493341 -120786213 + L1ME4a LINE L1 5657 5841 -280 26 0 0 0 chr6 68493445 68493471 -120786083 + AT_rich Low_complexity Low_complexity 1 26 0 246 206 95 40 chr6 68493574 68493700 -120785854 + L1ME4a LINE L1 5985 6117 -4 2330 65 16 10 chr6 68493711 68494020 -120785534 - AluYa5 SINE Alu 0 311 1 26 30 0 0 chr6 68495504 68495537 -120784017 + AT_rich Low_complexity Low_complexity 1 33 0 2146 116 3 7 chr6 68495559 68495853 -120783701 - AluSx SINE Alu -18 294 2 21 0 0 0 chr6 68495906 68495927 -120783627 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 68496277 68496308 -120783246 + AT_rich Low_complexity Low_complexity 1 31 0 1861 287 64 4 chr6 68496506 68496991 -120782563 + MER69 DNA AcHobo 10 523 -2003 354 241 248 0 chr6 68497151 68497292 -120782262 - MIR SINE MIR -5 257 82 311 223 107 18 chr6 68497744 68497856 -120781698 - L1MEd LINE L1 -5960 245 124 639 241 65 25 chr6 68498119 68498318 -120781236 + MLT1J2 LTR MaLR 1 207 -243 361 268 22 58 chr6 68498352 68498413 -120781141 + MLT1J2 LTR MaLR 284 346 -104 2156 145 91 5 chr6 68498413 68498807 -120780747 + MSTA LTR MaLR 1 428 0 361 268 22 58 chr6 68498807 68498883 -120780671 + MLT1J2 LTR MaLR 346 416 -34 190 294 20 98 chr6 68499759 68499788 -120779766 - MIR3 SINE MIR -54 154 124 4168 126 48 13 chr6 68499788 68500495 -120779059 + L1PA15 LINE L1 5434 6165 0 190 294 20 98 chr6 68500495 68500618 -120778936 - MIR3 SINE MIR -84 124 14 3399 151 45 22 chr6 68501055 68501679 -120777875 - L1MA7 LINE L1 -6 6285 5642 2107 152 15 0 chr6 68501679 68502022 -120777532 - MER7A DNA MER2_type 0 346 1 3399 151 45 22 chr6 68502022 68502086 -120777468 - L1MA7 LINE L1 -649 5642 5581 628 240 0 66 chr6 68502380 68502563 -120776991 - L1MEd LINE L1 -6192 204 34 381 338 19 6 chr6 68502843 68503000 -120776554 - MLT1I LTR MaLR -148 261 103 7042 96 15 3 chr6 68503015 68504628 -120774926 - HERVH LTR ERV1 -130 7583 5769 1220 116 21 0 chr6 68504614 68504803 -120774751 - HERVH LTR ERV1 -3033 4680 4488 * 3122 134 14 6 chr6 68504805 68505303 -120774251 - HERVH LTR ERV1 -3720 3993 3492 983 120 7 0 chr6 68505293 68505443 -120774111 - HERVH LTR ERV1 -4423 3290 3140 * 16239 110 22 25 chr6 68505422 68508675 -120770879 - HERVH LTR ERV1 -4718 2995 1 2699 83 125 2 chr6 68508677 68509076 -120770478 - LTR7 LTR ERV1 -2 448 1 47 33 0 0 chr6 68510023 68510084 -120769470 + AT_rich Low_complexity Low_complexity 1 61 0 344 272 79 26 chr6 68510232 68510346 -120769208 - LTR33 LTR ERVL -309 212 93 182 229 0 21 chr6 68510646 68510694 -120768860 + L2 LINE L2 3267 3313 0 219 69 0 0 chr6 68511516 68511545 -120768009 + (TTG)n Simple_repeat Simple_repeat 2 30 0 199 315 37 0 chr6 68511939 68511993 -120767561 + MIR SINE MIR 20 75 -187 267 388 30 12 chr6 68512521 68512686 -120766868 - L2 LINE L2 -423 2891 2724 1583 258 118 28 chr6 68512866 68513408 -120766146 + MLT1E LTR MaLR 1 591 -2 270 175 0 0 chr6 68513891 68513931 -120765623 + Alu SINE Alu 1 40 -259 298 287 109 52 chr6 68515024 68515198 -120764356 - MIR3 SINE MIR -12 196 13 348 325 93 0 chr6 68515204 68515355 -120764199 - MER117 DNA MER1_type -31 166 2 957 279 69 15 chr6 68516064 68516472 -120763082 + MER57B LTR ERV1 1 430 -4 23 33 0 0 chr6 68516703 68516733 -120762821 + AT_rich Low_complexity Low_complexity 1 30 0 580 293 115 49 chr6 68517220 68517647 -120761907 + MLT1J LTR MaLR 3 457 -54 21 0 0 0 chr6 68517703 68517724 -120761830 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr6 68517724 68517752 -120761802 + (TG)n Simple_repeat Simple_repeat 2 29 0 363 265 0 10 chr6 68518034 68518132 -120761422 - LTR67 LTR ERVL -11 546 450 1422 204 83 70 chr6 68518363 68518752 -120760802 - LTR68 LTR ERV1 -274 466 69 351 0 0 0 chr6 68518752 68518791 -120760763 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1422 204 83 70 chr6 68518791 68518861 -120760693 - LTR68 LTR ERV1 -671 69 1 742 289 145 37 chr6 68518946 68519326 -120760228 - LTR16A LTR ERVL -8 442 22 379 266 52 121 chr6 68519445 68519735 -120759819 - ERVL LTR ERVL -1315 4449 4180 310 294 95 59 chr6 68520283 68520433 -120759121 - ERVL LTR ERVL -3101 2663 2501 1959 158 91 37 chr6 68520433 68520839 -120758715 - MSTA LTR MaLR 0 428 1 310 294 95 59 chr6 68520839 68520909 -120758645 - ERVL LTR ERVL -3263 2501 2435 332 288 25 17 chr6 68521098 68521216 -120758338 - ERVL LTR ERVL -3571 2193 2075 21 0 0 0 chr6 68521238 68521259 -120758295 + AT_rich Low_complexity Low_complexity 1 21 0 219 324 122 0 chr6 68521292 68521366 -120758188 - MIR SINE MIR -107 101 19 21 71 0 0 chr6 68521981 68522023 -120757531 + AT_rich Low_complexity Low_complexity 1 42 0 1334 121 10 19 chr6 68522549 68522756 -120756798 + THE1C LTR MaLR 171 375 0 9921 181 92 27 chr6 68522756 68522922 -120756632 - L1MCa LINE L1 -3844 2582 2428 2135 87 0 14 chr6 68522922 68523233 -120756321 + AluY SINE Alu 1 307 0 9921 181 92 27 chr6 68523233 68525470 -120754084 - L1MCa LINE L1 -3998 2428 5 2117 93 4 0 chr6 68526450 68526719 -120752835 + AluSc SINE Alu 29 298 -11 991 39 0 16 chr6 68526719 68526847 -120752707 + L1PA5 LINE L1 6027 6152 -2 189 254 0 0 chr6 68526887 68526958 -120752596 + A-rich Low_complexity Low_complexity 1 71 0 746 177 8 0 chr6 68527002 68527132 -120752422 + AluJo SINE Alu 11 141 -171 24 53 0 0 chr6 68527149 68527187 -120752367 + AT_rich Low_complexity Low_complexity 1 38 0 873 113 7 7 chr6 68527435 68527577 -120751977 + L1PA15 LINE L1 6024 6165 0 484 114 0 13 chr6 68527614 68527693 -120751861 - Charlie1 DNA MER1_type -46 2715 2638 * 1636 237 60 12 chr6 68527692 68528110 -120751444 - Charlie1 DNA MER1_type -1746 1015 578 1204 81 0 0 chr6 68528276 68528436 -120751118 - L1PA10 LINE L1 -257 5911 5752 900 236 141 17 chr6 68528434 68528821 -120750733 - L1ME LINE L1 -489 5673 5239 * 522 345 40 23 chr6 68528855 68529159 -120750395 + L2 LINE L2 2819 3127 -186 22 0 0 0 chr6 68529834 68529856 -120749698 + AT_rich Low_complexity Low_complexity 1 22 0 271 254 79 92 chr6 68530074 68530254 -120749300 + MIR3 SINE MIR 4 175 -63 266 146 0 18 chr6 68530774 68530829 -120748725 + (TC)n Simple_repeat Simple_repeat 1 54 0 2505 137 41 10 chr6 68530965 68531380 -120748174 + MSTA LTR MaLR 1 428 0 243 256 107 0 chr6 68532414 68532535 -120747019 - MER103 DNA DNA -10 156 23 328 335 128 32 chr6 68532802 68533145 -120746409 - MLT1L LTR MaLR -1 614 239 270 286 0 0 chr6 68533221 68533305 -120746249 - MLT1L LTR MaLR -531 84 1 2864 244 115 31 chr6 68533756 68534962 -120744592 + L1ME1 LINE L1 871 1975 -4240 1110 231 0 5 chr6 68534962 68535183 -120744371 + MER58A DNA MER1_type 5 224 0 2864 244 115 31 chr6 68535183 68535880 -120743674 + L1ME1 LINE L1 1975 2612 -3603 2227 141 32 44 chr6 68535880 68536313 -120743241 + MSTC LTR MaLR 1 428 0 2864 244 115 31 chr6 68536313 68536635 -120742919 + L1ME1 LINE L1 2612 3283 -2932 941 218 47 44 chr6 68536636 68536999 -120742555 + L1ME1 LINE L1 4318 4681 -1534 755 220 35 13 chr6 68537023 68537255 -120742299 + L1ME1 LINE L1 5105 5341 -874 * 2291 209 50 21 chr6 68537253 68537819 -120741735 + L1ME1 LINE L1 5650 6231 -4 1622 128 0 128 chr6 68539103 68539448 -120740106 + AluY SINE Alu 1 301 0 294 250 10 31 chr6 68540068 68540164 -120739390 - MIR SINE MIR 0 262 169 186 300 14 57 chr6 68540604 68540674 -120738880 + MIR SINE MIR 19 85 -177 207 298 161 16 chr6 68542445 68542569 -120736985 + MIR SINE MIR 31 172 -90 251 336 67 20 chr6 68543631 68543705 -120735849 + L2 LINE L2 2591 2660 -654 1630 159 26 46 chr6 68543705 68544051 -120735503 + MER44D DNA MER2_type 1 609 0 251 336 67 20 chr6 68544051 68544125 -120735429 + L2 LINE L2 2660 2746 -568 429 187 27 23 chr6 68544297 68544395 -120735159 + MER5B DNA MER1_type 76 162 -16 2129 121 13 3 chr6 68544708 68545022 -120734532 - L1PA13 LINE L1 -354 5814 5498 2360 80 12 21 chr6 68545022 68545358 -120734196 + L1PA13 LINE L1 5824 6156 -7 495 0 0 0 chr6 68546152 68546207 -120733347 + (TG)n Simple_repeat Simple_repeat 1 55 0 2174 124 0 13 chr6 68546604 68546910 -120732644 + AluSx SINE Alu 1 302 -10 2088 117 13 0 chr6 68546910 68547209 -120732345 + AluSp SINE Alu 1 303 -10 486 320 44 17 chr6 68547289 68547470 -120732084 - MIR SINE MIR -70 192 7 804 257 149 58 chr6 68547825 68548253 -120731301 - MLT1B LTR MaLR 0 390 1 207 238 30 89 chr6 68550822 68550923 -120728631 - MIR SINE MIR -2 260 166 533 263 12 19 chr6 68550934 68551094 -120728460 - MIR SINE MIR 0 262 104 23 0 0 0 chr6 68552559 68552582 -120726972 + AT_rich Low_complexity Low_complexity 1 23 0 234 261 29 0 chr6 68552605 68552674 -120726880 + L1ME LINE L1 5595 5665 -456 205 302 58 12 chr6 68553588 68553674 -120725880 - L2 LINE L2 -60 3253 3164 22 0 0 0 chr6 68554160 68554182 -120725372 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr6 68554262 68554299 -120725255 + AT_rich Low_complexity Low_complexity 1 37 0 32 0 0 0 chr6 68557308 68557340 -120722214 + AT_rich Low_complexity Low_complexity 1 32 0 229 364 15 0 chr6 68557428 68557494 -120722060 - L2 LINE L2 0 3313 3247 227 252 142 79 chr6 68558160 68558287 -120721267 - L2 LINE L2 -649 2665 2531 470 259 15 22 chr6 68558306 68558441 -120721113 - L2 LINE L2 -914 2400 2267 329 195 0 13 chr6 68559243 68559320 -120720234 + (TATG)n Simple_repeat Simple_repeat 3 78 0 279 272 117 10 chr6 68560116 68560219 -120719335 - MIR3 SINE MIR -11 197 84 26 30 0 0 chr6 68561821 68561854 -120717700 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr6 68561972 68561993 -120717561 + AT_rich Low_complexity Low_complexity 1 21 0 244 301 54 0 chr6 68561994 68562160 -120717394 - L1ME LINE L1 -268 5853 5679 253 250 90 10 chr6 68563781 68563881 -120715673 + L3 LINE CR1 267 374 -1203 22 0 0 0 chr6 68564075 68564097 -120715457 + AT_rich Low_complexity Low_complexity 1 22 0 3522 90 33 13 chr6 68564099 68564620 -120714934 - L1PA10 LINE L1 -7 6161 5631 895 233 31 36 chr6 68564853 68565076 -120714478 + MER58A DNA MER1_type 2 223 -1 22 0 0 0 chr6 68565089 68565111 -120714443 + AT_rich Low_complexity Low_complexity 1 22 0 266 340 10 0 chr6 68565129 68565229 -120714325 + L3 LINE CR1 804 904 -673 340 238 0 76 chr6 68565348 68565453 -120714101 + L3 LINE CR1 920 1016 -561 25 0 0 0 chr6 68567427 68567452 -120712102 + AT_rich Low_complexity Low_complexity 1 25 0 719 284 61 58 chr6 68568703 68569505 -120710049 + L1MEd LINE L1 783 1622 -868 21 36 0 0 chr6 68569696 68569724 -120709830 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 68570272 68570294 -120709260 + AT_rich Low_complexity Low_complexity 1 22 0 667 201 54 49 chr6 68622227 68622411 -120657143 + MER5A DNA MER1_type 2 186 -3 443 19 0 0 chr6 68622563 68622616 -120656938 - MADE1 DNA Mariner 0 80 28 867 202 27 0 chr6 68622881 68623064 -120656490 - MER5A DNA MER1_type 0 189 2 195 327 146 27 chr6 68624263 68624459 -120655095 + MIR SINE MIR 18 230 -32 372 242 85 42 chr6 68624769 68624934 -120654620 + MIR SINE MIR 78 249 -13 263 341 175 47 chr6 68624951 68625487 -120654067 + L2 LINE L2 982 1586 -1728 199 315 41 0 chr6 68625498 68625571 -120653983 + L2 LINE L2 2268 2343 -971 2440 267 45 25 chr6 68625937 68626962 -120652592 + L1M4 LINE L1 3504 4581 -1565 393 245 0 32 chr6 68626968 68627062 -120652492 + MLT1F1 LTR MaLR 35 125 -442 2383 217 20 18 chr6 68627077 68627631 -120651923 + L1MD3 LINE L1 7432 7986 -9 2152 127 0 29 chr6 68627631 68627946 -120651608 + AluSq SINE Alu 1 306 -7 1133 269 36 10 chr6 68627955 68628345 -120651209 + L1M4 LINE L1 4603 5002 -1144 19707 166 24 35 chr6 68628346 68628720 -120650834 + L1MA1 LINE L1 13 390 -7175 2397 90 3 0 chr6 68628720 68629032 -120650522 - AluSp SINE Alu 0 313 1 19707 166 24 35 chr6 68629032 68630520 -120649034 + L1MA1 LINE L1 390 1893 -5672 7133 14 39 0 chr6 68630520 68631352 -120648202 + L1PA2 LINE L1 5275 6155 0 19707 166 24 35 chr6 68631352 68635455 -120644099 + L1MA1 LINE L1 1893 5914 -1651 21 0 0 0 chr6 68636209 68636230 -120643324 + AT_rich Low_complexity Low_complexity 1 21 0 2341 56 0 14 chr6 68636795 68637114 -120642440 - AluY SINE Alu 0 315 1 2421 79 0 0 chr6 68637181 68637485 -120642069 - AluSg SINE Alu -6 304 1 21 100 0 0 chr6 68638155 68638225 -120641329 + AT_rich Low_complexity Low_complexity 1 70 0 530 254 109 50 chr6 68639246 68639584 -120639970 - HAL1 LINE L1 -205 2302 1945 432 278 148 18 chr6 68639666 68639889 -120639665 - HAL1 LINE L1 -775 1732 1481 4992 146 16 12 chr6 68639993 68640903 -120638651 + L1MA1 LINE L1 6112 7033 -688 2132 108 10 13 chr6 68640903 68641209 -120638345 + AluSq SINE Alu 6 310 -3 4992 146 16 12 chr6 68641209 68641603 -120637951 + L1MA1 LINE L1 7033 7424 -297 1304 173 4 0 chr6 68641601 68641838 -120637716 + L1MC1 LINE L1 5825 6062 -271 * 180 111 0 0 chr6 68641849 68641876 -120637678 + (CATATA)n Simple_repeat Simple_repeat 1 27 0 378 250 0 22 chr6 68641876 68641968 -120637586 - L1MC4 LINE L1 -1339 6703 6614 706 193 90 36 chr6 68641971 68642137 -120637417 + L1MC1 LINE L1 6080 6254 -79 252 200 100 0 chr6 68642318 68642378 -120637176 - HAL1 LINE L1 -1106 1401 1336 538 332 26 30 chr6 68642383 68642615 -120636939 - MER115 DNA AcHobo -298 395 165 387 263 140 36 chr6 68642737 68643106 -120636448 - HAL1 LINE L1 -1520 987 658 2162 122 3 0 chr6 68643106 68643410 -120636144 - AluSq SINE Alu -8 305 1 387 263 140 36 chr6 68643410 68643674 -120635880 - HAL1 LINE L1 -1849 658 259 252 86 0 0 chr6 68644121 68644156 -120635398 + (TG)n Simple_repeat Simple_repeat 1 35 0 195 170 0 0 chr6 68644156 68644203 -120635351 + GA-rich Low_complexity Low_complexity 2 48 0 201 39 0 0 chr6 68644404 68644430 -120635124 + (TG)n Simple_repeat Simple_repeat 2 27 0 252 0 0 0 chr6 68644615 68644643 -120634911 + (TA)n Simple_repeat Simple_repeat 1 28 0 40 59 0 0 chr6 68644655 68644723 -120634831 + AT_rich Low_complexity Low_complexity 1 68 0 305 295 93 50 chr6 68645347 68645486 -120634068 + MLT1I LTR MaLR 265 409 0 40 59 0 0 chr6 68646490 68646558 -120632996 + AT_rich Low_complexity Low_complexity 1 68 0 299 349 32 11 chr6 68646699 68646980 -120632574 + L1MC/D LINE L1 4550 4836 -1310 2370 119 5 19 chr6 68647089 68647458 -120632096 + THE1B LTR MaLR 1 364 0 11415 106 10 0 chr6 68647460 68649022 -120630532 + THE1B-int LTR MaLR 4 1580 0 2130 111 18 80 chr6 68649022 68649410 -120630144 + THE1B LTR MaLR 1 364 0 28 29 0 0 chr6 68649451 68649486 -120630068 + AT_rich Low_complexity Low_complexity 1 35 0 313 277 115 64 chr6 68649717 68650107 -120629447 + L1MC/D LINE L1 5309 5718 -2090 21 0 0 0 chr6 68650110 68650131 -120629423 + AT_rich Low_complexity Low_complexity 1 21 0 547 294 93 5 chr6 68650535 68650749 -120628805 + MLT1I LTR MaLR 167 399 -10 239 343 48 0 chr6 68651481 68651601 -120627953 + MIR SINE MIR 19 150 -62 207 114 0 0 chr6 68651820 68651855 -120627699 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 488 88 0 0 chr6 68652475 68652543 -120627011 - MADE1 DNA Mariner -12 68 1 235 180 20 0 chr6 68652741 68652791 -120626763 + (TA)n Simple_repeat Simple_repeat 2 52 0 1351 294 79 43 chr6 68652825 68653549 -120626005 - L2 LINE L2 -1152 2162 1413 360 300 0 0 chr6 68653706 68653806 -120625748 - MIR SINE MIR -59 203 104 207 232 0 0 chr6 68653891 68653947 -120625607 + (CA)n Simple_repeat Simple_repeat 1 56 0 21 36 0 0 chr6 68654580 68654608 -120624946 + AT_rich Low_complexity Low_complexity 1 28 0 1915 107 14 3 chr6 68655529 68655818 -120623736 + L1MA6 LINE L1 5650 5941 -359 22 35 0 0 chr6 68656318 68656347 -120623207 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr6 68656420 68656450 -120623104 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr6 68656621 68656667 -120622887 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr6 68656824 68656852 -120622702 + AT_rich Low_complexity Low_complexity 1 28 0 2410 92 0 0 chr6 68657624 68657930 -120621624 - AluY SINE Alu -5 306 1 260 350 34 60 chr6 68658151 68658268 -120621286 + L2 LINE L2 3121 3234 -38 194 298 18 18 chr6 68658519 68658576 -120620978 + MIR SINE MIR 30 86 -176 * 649 199 51 19 chr6 68658561 68658717 -120620837 - MIR SINE MIR -41 221 61 239 362 119 10 chr6 68659210 68659441 -120620113 + MIR3 SINE MIR 3 256 -6 480 219 62 120 chr6 68661654 68661896 -120617658 + L2 LINE L2 3084 3311 -2 208 188 47 16 chr6 68662077 68662141 -120617413 + (TA)n Simple_repeat Simple_repeat 1 66 0 369 380 127 8 chr6 68662370 68662615 -120616939 - L3 LINE CR1 -354 1223 950 300 27 0 0 chr6 68662763 68662800 -120616754 + (GA)n Simple_repeat Simple_repeat 2 38 0 419 303 56 28 chr6 68662847 68663025 -120616529 - L3b LINE CR1 -277 1306 1124 312 393 127 8 chr6 68663235 68663479 -120616075 - L3 LINE CR1 -354 1223 951 199 301 72 12 chr6 68663525 68663608 -120615946 - L3 LINE CR1 -746 831 744 1378 270 116 18 chr6 68663943 68664495 -120615059 + L2 LINE L2 2255 2860 -454 2223 58 4 0 chr6 68664668 68664945 -120614609 + AluY SINE Alu 1 278 -33 450 0 0 0 chr6 68664945 68664995 -120614559 + (CA)n Simple_repeat Simple_repeat 1 50 0 369 328 120 16 chr6 68665172 68665355 -120614199 - MIR3 SINE MIR -3 205 4 2363 73 0 10 chr6 68665372 68665685 -120613869 + AluY SINE Alu 1 310 -1 2205 181 102 2 chr6 68666437 68666896 -120612658 - MLT1D LTR MaLR 0 505 1 1794 308 152 16 chr6 68667621 68668436 -120611118 + L2 LINE L2 1392 2427 -887 1182 229 108 40 chr6 68668436 68668807 -120610747 + MSTD LTR MaLR 1 396 0 1794 308 152 16 chr6 68668807 68669205 -120610349 + L2 LINE L2 2427 2770 -544 1989 92 37 3 chr6 68669347 68669641 -120609913 - L1PA13 LINE L1 -1 6162 5859 1634 167 38 24 chr6 68670040 68670333 -120609221 - AluSx SINE Alu -15 297 1 1814 178 44 137 chr6 68670708 68671271 -120608283 + MER67D LTR ERV1 4 514 0 1976 140 34 0 chr6 68671738 68672031 -120607523 - AluSx SINE Alu -9 303 1 22 56 0 0 chr6 68672510 68672546 -120607008 + AT_rich Low_complexity Low_complexity 1 36 0 2023 159 3 0 chr6 68672691 68672999 -120606555 - AluJb SINE Alu 0 312 4 2116 135 0 0 chr6 68673765 68674061 -120605493 - AluSg SINE Alu -14 296 1 180 0 0 0 chr6 68674065 68674085 -120605469 + (T)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr6 68674300 68674328 -120605226 + AT_rich Low_complexity Low_complexity 1 28 0 1000 270 39 0 chr6 68674646 68674879 -120604675 - MIR SINE MIR -9 253 12 2209 72 7 3 chr6 68677860 68678152 -120601402 + AluSc SINE Alu 2 294 -15 27 29 0 0 chr6 68679276 68679310 -120600244 + AT_rich Low_complexity Low_complexity 1 34 0 360 0 0 0 chr6 68680338 68680378 -120599176 + (CA)n Simple_repeat Simple_repeat 2 41 0 205 148 37 37 chr6 68680637 68680691 -120598863 + (TTATA)n Simple_repeat Simple_repeat 4 57 0 2036 96 4 0 chr6 68680804 68681076 -120598478 + AluSq SINE Alu 5 277 -36 186 71 0 0 chr6 68681076 68681104 -120598450 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 248 323 114 59 chr6 68682979 68683468 -120596086 + L2 LINE L2 1888 2403 -911 326 353 69 25 chr6 68684659 68684868 -120594686 + MIR SINE MIR 2 218 -44 3747 252 108 14 chr6 68686284 68687584 -120591970 + L1MB1 LINE L1 1056 2477 -3907 1083 139 0 120 chr6 68687584 68687800 -120591754 + AluJb SINE Alu 85 274 -38 343 172 58 0 chr6 68687801 68687888 -120591666 + GA-rich Low_complexity Low_complexity 4 95 0 12572 201 50 13 chr6 68687899 68691081 -120588473 + L1MB1 LINE L1 2470 5760 -743 231 167 0 0 chr6 68691084 68691126 -120588428 + GA-rich Low_complexity Low_complexity 4 45 0 649 150 42 8 chr6 68691126 68691246 -120588308 + L1MB1 LINE L1 6267 6390 -14 495 145 0 65 chr6 68691286 68691472 -120588082 + (GGA)n Simple_repeat Simple_repeat 1 174 0 474 137 0 0 chr6 68691472 68691567 -120587987 + (TAG)n Simple_repeat Simple_repeat 2 96 0 2393 50 10 7 chr6 68691944 68692244 -120587310 + AluY SINE Alu 3 303 -8 279 292 39 0 chr6 68693338 68693468 -120586086 + L1ME4a LINE L1 5649 5783 -338 262 226 190 36 chr6 68693609 68693746 -120585808 + L1ME4a LINE L1 5964 6121 0 349 283 99 7 chr6 68695347 68695499 -120584055 + L2 LINE L2 2918 3083 -189 220 344 49 35 chr6 68696137 68696318 -120583236 + MIR3 SINE MIR 7 188 -74 23 33 0 0 chr6 68696339 68696369 -120583185 + AT_rich Low_complexity Low_complexity 1 30 0 258 262 0 0 chr6 68696597 68696658 -120582896 - MIR SINE MIR -40 222 162 369 270 65 30 chr6 68697627 68697827 -120581727 + L1ME LINE L1 -492 4294967010 -6194 704 276 103 39 chr6 68698099 68698760 -120580794 + L1ME LINE L1 926 1720 -4887 4923 225 93 82 chr6 68698762 68699857 -120579697 + L1ME LINE L1 2668 3749 -2695 2830 7 0 0 chr6 68699857 68700165 -120579389 - AluYb8 SINE Alu -10 308 1 4923 225 93 82 chr6 68700165 68701440 -120578114 + L1ME LINE L1 3749 5094 -1350 1888 172 47 40 chr6 68701440 68701865 -120577689 - MSTC LTR MaLR 0 428 1 4923 225 93 82 chr6 68701865 68702875 -120576679 + L1ME LINE L1 5094 6091 -353 10674 227 44 78 chr6 68702876 68704442 -120575112 + L1MA9 LINE L1 714 2331 -4296 14791 91 32 0 chr6 68704442 68705755 -120573799 + L1PA7 LINE L1 3060 4329 -1825 1814 120 3 28 chr6 68705755 68706039 -120573515 + AluSg SINE Alu 21 297 -13 14791 91 32 0 chr6 68706039 68707753 -120571801 + L1PA7 LINE L1 4329 6153 -1 10674 227 44 78 chr6 68707753 68708183 -120571371 + L1MA9 LINE L1 2331 2774 -3853 1953 109 63 0 chr6 68708183 68708467 -120571087 - AluSc SINE Alu -7 302 1 10674 227 44 78 chr6 68708467 68709243 -120570311 + L1MA9 LINE L1 2774 3575 -3052 2579 143 24 19 chr6 68709243 68709668 -120569886 + MSTC LTR MaLR 2 428 0 10674 227 44 78 chr6 68709668 68712949 -120566605 + L1MA9 LINE L1 3575 6622 -5 238 319 81 21 chr6 68713866 68714076 -120565478 + MIR3 SINE MIR 41 215 -2 926 296 152 19 chr6 68714212 68714735 -120564819 - L2 LINE L2 -3 3310 2713 7491 27 0 0 chr6 68714736 68716059 -120563495 - L1PA4 LINE L1 -3 6152 4830 213 315 76 0 chr6 68716106 68716198 -120563356 + MIR SINE MIR 163 261 -1 426 216 99 37 chr6 68716551 68716713 -120562841 + MER69 DNA AcHobo 2168 2339 -187 274 339 24 31 chr6 68716813 68716940 -120562614 + L2 LINE L2 3139 3264 -8 776 260 41 9 chr6 68717858 68718089 -120561465 + L1MC5 LINE L1 6669 6908 -900 28936 119 13 71 chr6 68718102 68721112 -120558442 + L1P LINE L1 9 2567 -3579 372 71 0 0 chr6 68721112 68721168 -120558386 + (TA)n Simple_repeat Simple_repeat 2 57 0 28936 119 13 71 chr6 68721168 68723539 -120556015 + L1P LINE L1 2567 5075 -1071 6579 68 27 0 chr6 68723539 68724699 -120554855 + L1PA7 LINE L1 4970 6154 0 230 266 226 8 chr6 68724743 68724867 -120554687 + L1MC5 LINE L1 6958 7108 -853 345 155 17 0 chr6 68724903 68724961 -120554593 + L1MC5 LINE L1 7173 7231 -730 360 251 81 21 chr6 68725021 68725237 -120554317 + L1MC5 LINE L1 7292 7495 -542 259 216 97 75 chr6 68725278 68725412 -120554142 + L1MC5 LINE L1 7508 7644 -317 29 47 0 0 chr6 68725514 68725557 -120553997 + AT_rich Low_complexity Low_complexity 1 43 0 582 114 0 0 chr6 68725594 68725682 -120553872 + (TA)n Simple_repeat Simple_repeat 1 88 0 282 240 27 0 chr6 68725682 68725757 -120553797 + L1M4 LINE L1 5194 5270 -876 185 261 193 108 chr6 68727360 68727536 -120552018 + MIR3 SINE MIR 16 206 -2 304 223 98 27 chr6 68727913 68728025 -120551529 + MIR SINE MIR 92 211 -51 276 152 22 0 chr6 68728197 68728243 -120551311 - L2 LINE L2 -2 3311 3265 356 283 28 44 chr6 68729988 68730168 -120549386 + MIR SINE MIR 73 249 -13 328 374 58 12 chr6 68731943 68732114 -120547440 - MIR3 SINE MIR -27 181 3 7437 105 9 26 chr6 68732914 68733990 -120545564 + HSMAR1 DNA Mariner 2 1059 -228 21 0 0 0 chr6 68733995 68734016 -120545538 + AT_rich Low_complexity Low_complexity 1 21 0 210 289 13 13 chr6 68734568 68734644 -120544910 + MIR SINE MIR 183 258 -4 371 320 10 0 chr6 68735051 68735148 -120544406 - L3 LINE CR1 -112 1465 1368 429 243 83 24 chr6 68735160 68735329 -120544225 - MIR SINE MIR 0 262 84 668 232 111 5 chr6 68735493 68735691 -120543863 - MER20 DNA MER1_type 0 219 1 1408 229 27 7 chr6 68735871 68736164 -120543390 + AluJo SINE Alu 1 299 -13 2380 88 0 0 chr6 68736421 68736715 -120542839 + AluSq SINE Alu 1 294 -19 21 0 0 0 chr6 68737663 68737684 -120541870 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr6 68738063 68738095 -120541459 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 68738285 68738306 -120541248 + AT_rich Low_complexity Low_complexity 1 21 0 1348 256 101 22 chr6 68738358 68738765 -120540789 + LTR40a LTR ERVL 81 519 0 21 71 0 0 chr6 68740125 68740167 -120539387 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr6 68740889 68740917 -120538637 + AT_rich Low_complexity Low_complexity 1 28 0 267 374 86 11 chr6 68741180 68741367 -120538187 + L3b LINE CR1 1294 1494 -89 257 285 78 34 chr6 68742081 68742260 -120537294 - L2 LINE L2 0 3313 3127 234 277 66 18 chr6 68743227 68743393 -120536161 + L1ME LINE L1 5731 5904 -217 1315 179 80 33 chr6 68743529 68743803 -120535751 + AluJo SINE Alu 1 287 -25 585 300 103 15 chr6 68743947 68744220 -120535334 - MLT1I LTR MaLR -15 394 98 726 241 85 17 chr6 68744352 68744588 -120534966 - MER112 DNA MER1_type -7 253 2 248 339 18 48 chr6 68745868 68746033 -120533521 + MIR3 SINE MIR 44 203 -5 450 309 126 47 chr6 68747867 68748337 -120531217 + HAL1 LINE L1 1036 1542 -965 377 341 89 29 chr6 68748453 68748834 -120530720 + L1MEc LINE L1 2120 2523 -3873 190 286 71 0 chr6 68749062 68749132 -120530422 + L2 LINE L2 1853 1927 -1387 197 324 70 0 chr6 68749928 68749999 -120529555 + L3 LINE CR1 340 415 -1162 694 340 209 9 chr6 68750086 68750821 -120528733 + L3 LINE CR1 575 1456 -121 297 276 143 0 chr6 68752665 68752763 -120526791 + L2 LINE L2 3202 3313 0 198 0 0 0 chr6 68752861 68752883 -120526671 + (A)n Simple_repeat Simple_repeat 1 22 0 512 310 20 25 chr6 68753293 68753493 -120526061 - MIR SINE MIR -1 261 63 272 162 189 36 chr6 68753800 68753911 -120525643 - L1ME4a LINE L1 -5 6116 5989 22 0 0 0 chr6 68754027 68754049 -120525505 + AT_rich Low_complexity Low_complexity 1 22 0 1227 133 52 86 chr6 68754177 68754301 -120525253 + MLT1A1 LTR MaLR 1 128 -300 1906 153 38 41 chr6 68754301 68754666 -120524888 + THE1B LTR MaLR 1 364 0 1227 133 52 86 chr6 68754666 68754927 -120524627 + MLT1A1 LTR MaLR 128 428 0 1102 252 77 17 chr6 68755525 68755878 -120523676 + MLT1A2 LTR MaLR 1 374 0 239 300 29 0 chr6 68756405 68756475 -120523079 + L2 LINE L2 3241 3312 -1 24 0 0 0 chr6 68756635 68756659 -120522895 + AT_rich Low_complexity Low_complexity 1 24 0 193 355 116 48 chr6 68757381 68757570 -120521984 + MIR3 SINE MIR 4 205 -3 190 157 39 78 chr6 68757684 68757735 -120521819 - MER5B DNA MER1_type -129 49 1 279 246 31 0 chr6 68757743 68757808 -120521746 + MER5A DNA MER1_type 1 67 -122 1225 195 19 31 chr6 68758009 68758266 -120521288 - MIR SINE MIR 0 262 9 26 101 0 0 chr6 68758932 68759021 -120520533 + AT_rich Low_complexity Low_complexity 1 89 0 638 229 73 49 chr6 68760004 68760209 -120519345 - MIR SINE MIR -42 220 11 736 218 31 52 chr6 68761032 68761225 -120518329 - MER5A DNA MER1_type 0 189 1 647 203 37 37 chr6 68761248 68761411 -120518143 - MER5B DNA MER1_type -15 163 1 701 262 148 60 chr6 68762634 68763088 -120516466 + L2 LINE L2 2817 3310 -3 3268 192 65 22 chr6 68763229 68764315 -120515239 + L1MB7 LINE L1 5034 6163 -21 302 192 26 0 chr6 68764320 68764398 -120515156 + L1MB7 LINE L1 6105 6184 0 1812 210 50 48 chr6 68764653 68765192 -120514362 + MLT1E3 LTR MaLR 85 624 0 189 319 0 0 chr6 68765922 68765969 -120513585 - L2 LINE L2 -38 3275 3229 21 0 0 0 chr6 68766877 68766898 -120512656 + AT_rich Low_complexity Low_complexity 1 21 0 236 278 0 67 chr6 68767184 68767274 -120512280 - MLT1K LTR MaLR -496 92 9 801 262 128 33 chr6 68767745 68768112 -120511442 + MLT1K LTR MaLR 179 580 -8 200 311 57 9 chr6 68769116 68769222 -120510332 - L3b LINE CR1 -362 1221 1111 249 259 0 0 chr6 68769523 68769581 -120509973 + MIR3 SINE MIR 130 187 -21 360 0 0 0 chr6 68769767 68769807 -120509747 + (TG)n Simple_repeat Simple_repeat 2 41 0 28 0 0 0 chr6 68771118 68771146 -120508408 + AT_rich Low_complexity Low_complexity 1 28 0 575 262 18 0 chr6 68771726 68771894 -120507660 + L1ME4a LINE L1 5522 5692 -429 1251 203 72 0 chr6 68772002 68772293 -120507261 - MER58B DNA MER1_type 0 341 30 24 32 0 0 chr6 68772304 68772335 -120507219 + AT_rich Low_complexity Low_complexity 1 31 0 318 231 46 46 chr6 68772401 68772509 -120507045 + L1ME4a LINE L1 6008 6115 -6 24 0 0 0 chr6 68773162 68773186 -120506368 + AT_rich Low_complexity Low_complexity 1 24 0 389 242 38 8 chr6 68773341 68773473 -120506081 - MER103 DNA DNA -19 147 12 1959 141 40 0 chr6 68774735 68775033 -120504521 + AluSx SINE Alu 1 310 -2 843 78 0 0 chr6 68775059 68775188 -120504366 + (GGAA)n Simple_repeat Simple_repeat 4 132 0 384 22 0 0 chr6 68775282 68775327 -120504227 + (TG)n Simple_repeat Simple_repeat 2 46 0 313 207 0 46 chr6 68775628 68775715 -120503839 - MER96 DNA MER1_type? -92 83 1 1534 213 28 17 chr6 68775781 68776133 -120503421 + MLT1A1 LTR MaLR 10 365 0 312 240 147 93 chr6 68776273 68776531 -120503023 - MLT1I LTR MaLR -26 383 112 339 233 89 0 chr6 68776901 68776991 -120502563 - MIR SINE MIR -19 243 146 371 273 76 23 chr6 68777519 68777651 -120501903 - MIR SINE MIR -116 146 8 * 372 217 191 52 chr6 68777649 68777764 -120501790 + L2 LINE L2 3183 3313 0 226 281 37 0 chr6 68778325 68778407 -120501147 - L3b LINE CR1 -258 1325 1241 237 83 0 0 chr6 68778523 68778559 -120500995 + (CA)n Simple_repeat Simple_repeat 1 36 0 494 304 130 42 chr6 68778902 68779287 -120500267 + L2 LINE L2 1981 2399 -915 850 197 0 155 chr6 68780859 68781123 -120498431 + MER58A DNA MER1_type 2 224 0 215 264 0 0 chr6 68781734 68781787 -120497767 - MIR SINE MIR 0 262 210 327 280 217 37 chr6 68781846 68782035 -120497519 + MLT1J2 LTR MaLR 107 329 -121 2170 110 13 7 chr6 68782036 68782346 -120497208 + AluSx SINE Alu 1 312 0 226 277 10 50 chr6 68782632 68782733 -120496821 + L1PA12 LINE L1 2086 2182 -5399 4595 235 32 11 chr6 68782967 68783934 -120495620 + L1PA12 LINE L1 2182 3127 -4457 2839 13 0 0 chr6 68783934 68784244 -120495310 + AluYa5 SINE Alu 1 310 -1 4595 235 32 11 chr6 68784244 68785175 -120494379 + L1PA12 LINE L1 3127 4123 -3461 1505 168 62 37 chr6 68785190 68785542 -120494012 + THE1C LTR MaLR 15 375 0 8653 128 41 58 chr6 68785544 68787149 -120492405 + THE1C-int LTR MaLR 3 1580 0 1843 165 47 16 chr6 68787149 68787513 -120492041 + THE1C LTR MaLR 1 375 0 779 253 23 20 chr6 68787514 68787819 -120491735 + L1PA12 LINE L1 4149 4454 -3130 7963 214 26 13 chr6 68788036 68790158 -120489396 + L1 LINE L1 2983 5132 -1014 5220 132 11 24 chr6 68790272 68791289 -120488265 + L1PA16 LINE L1 5153 6157 -9 2349 75 3 40 chr6 68791697 68792018 -120487536 - AluY SINE Alu -2 309 1 197 0 71 0 chr6 68792031 68792059 -120487495 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1903 73 0 0 chr6 68792059 68792306 -120487248 - L1PA5 LINE L1 -16 6138 5892 233 250 0 15 chr6 68792309 68792377 -120487177 + MLT1J1 LTR MaLR 364 430 -16 206 330 58 10 chr6 68793675 68793778 -120485776 - L3b LINE CR1 -152 1431 1324 183 304 36 0 chr6 68793941 68793997 -120485557 - L2 LINE L2 -1 3312 3255 250 298 53 11 chr6 68794240 68794334 -120485220 - L2 LINE L2 -18 3254 3157 229 306 56 0 chr6 68794471 68794543 -120485011 - MIR SINE MIR -94 168 93 1551 150 68 41 chr6 68794544 68794838 -120484716 + AluJb SINE Alu 1 302 -10 876 211 17 0 chr6 68847788 68847963 -120431591 - MER20 DNA MER1_type -1 218 41 199 263 70 0 chr6 68848130 68848187 -120431367 + L2 LINE L2 3208 3268 -4 768 303 11 31 chr6 68848376 68848637 -120430917 + MIR SINE MIR 7 262 0 434 324 77 6 chr6 68848998 68849187 -120430367 + MIR SINE MIR 33 233 -29 190 351 18 0 chr6 68849372 68849429 -120430125 - L2 LINE L2 -12 3260 3203 3255 164 11 26 chr6 68849454 68850453 -120429101 - L1MA4 LINE L1 -364 5792 4993 1092 240 41 15 chr6 68851094 68851361 -120428193 - MER90 LTR ERV1 0 614 341 269 274 60 0 chr6 68853783 68853867 -120425687 + MIR SINE MIR 69 157 -105 6123 124 7 9 chr6 68853912 68855105 -120424449 - L1PB2 LINE L1 0 6151 4963 2240 179 4 73 chr6 68855103 68855638 -120423916 + L1 LINE L1 4427 4924 -1222 * 613 276 167 5 chr6 68855682 68855874 -120423680 - MIR SINE MIR -36 226 4 236 290 0 32 chr6 68855902 68855964 -120423590 + MIR SINE MIR 194 253 -9 305 254 102 17 chr6 68856384 68856420 -120423134 + MIR SINE MIR 84 116 -146 228 35 0 0 chr6 68856420 68856449 -120423105 + (TG)n Simple_repeat Simple_repeat 2 30 0 305 254 102 17 chr6 68856449 68856530 -120423024 + MIR SINE MIR 116 211 -51 512 188 68 38 chr6 68856847 68856980 -120422574 + L2 LINE L2 3175 3311 -2 267 290 9 37 chr6 68858371 68858478 -120421076 - MLT1L LTR MaLR -16 599 496 712 191 0 0 chr6 68858642 68858773 -120420781 - L1PA16 LINE L1 -20 6146 6016 263 271 47 9 chr6 68858790 68858897 -120420657 - MLT1L LTR MaLR -347 268 158 1475 247 63 83 chr6 68861340 68862223 -120417331 - HAL1 LINE L1 -97 2410 1545 22 0 0 0 chr6 68862332 68862354 -120417200 + AT_rich Low_complexity Low_complexity 1 22 0 2364 92 0 7 chr6 68862503 68862809 -120416745 - AluSc SINE Alu -5 304 1 27 49 0 0 chr6 68863078 68863119 -120416435 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr6 68863794 68863824 -120415730 + AT_rich Low_complexity Low_complexity 1 30 0 2544 271 195 52 chr6 68864253 68864703 -120414851 - L2 LINE L2 -1168 2146 1762 2169 126 0 0 chr6 68864703 68864997 -120414557 - AluSx SINE Alu -18 294 1 2544 271 195 52 chr6 68864997 68865180 -120414374 - L2 LINE L2 -1552 1762 1607 2101 132 0 7 chr6 68865180 68865483 -120414071 - AluSx SINE Alu -11 301 1 2544 271 195 52 chr6 68865483 68866516 -120413038 - L2 LINE L2 -1707 1607 239 401 236 0 0 chr6 68866796 68866885 -120412669 - MER115 DNA AcHobo -114 579 491 302 294 214 10 chr6 68866919 68867321 -120412233 - HAL1 LINE L1 -1970 537 54 777 294 20 104 chr6 68867660 68868295 -120411259 + MLT1K LTR MaLR 3 584 -4 36 23 0 0 chr6 68869353 68869396 -120410158 + AT_rich Low_complexity Low_complexity 1 43 0 359 238 38 0 chr6 68869977 68870057 -120409497 - MIR SINE MIR -179 83 1 319 273 220 8 chr6 68870070 68870202 -120409352 - MIR SINE MIR -3 259 100 340 231 130 42 chr6 68870669 68870885 -120408669 + L1ME LINE L1 5566 5800 -321 226 211 16 130 chr6 68871158 68871281 -120408273 + MLT1G1 LTR MaLR 3 111 -456 599 246 134 46 chr6 68871346 68871699 -120407855 + MLT1G1 LTR MaLR 201 595 0 201 121 0 0 chr6 68871934 68871967 -120407587 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 579 269 103 0 chr6 68873073 68873248 -120406306 - MIR SINE MIR -13 249 57 215 291 0 0 chr6 68873277 68873332 -120406222 - MIR SINE MIR -13 249 195 919 216 51 104 chr6 68873340 68873793 -120405761 + LTR37B LTR ERV1 16 444 -24 1488 85 5 15 chr6 68873909 68874110 -120405444 + AluSg/x SINE Alu 97 295 -17 1511 252 92 56 chr6 68874403 68874615 -120404939 + L1M4c LINE L1 1085 1288 -5275 1508 161 158 3 chr6 68874615 68874932 -120404622 + MER47A DNA MER2_type 1 366 0 1511 252 92 56 chr6 68874932 68876026 -120403528 + L1M4c LINE L1 1288 2561 -4002 987 265 56 83 chr6 68876077 68876632 -120402922 - MER21B LTR ERV1 -109 754 215 3261 151 22 26 chr6 68876664 68877246 -120402308 - LTR22 LTR ERVK 0 580 1 646 209 78 68 chr6 68877246 68877452 -120402102 - MER21B LTR ERV1 -643 220 13 216 0 0 0 chr6 68877473 68877497 -120402057 + (CA)n Simple_repeat Simple_repeat 2 25 0 312 258 11 0 chr6 68877539 68877632 -120401922 + L1M4c LINE L1 2548 2641 -3741 431 128 0 0 chr6 68878360 68878438 -120401116 - Alu SINE Alu 0 312 235 5353 223 97 15 chr6 68878438 68883252 -120396302 - L1PBa LINE L1 -2600 4262 1 * 12792 180 47 30 chr6 68883246 68886269 -120393285 - L1 LINE L1 -946 6619 3648 360 0 0 0 chr6 68886269 68886309 -120393245 + (TG)n Simple_repeat Simple_repeat 2 41 0 12792 180 47 30 chr6 68886309 68887386 -120392168 - L1 LINE L1 -3917 3648 2591 2165 114 13 22 chr6 68887386 68887420 -120392134 - AluSx SINE Alu 0 312 279 216 0 0 0 chr6 68887420 68887444 -120392110 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2165 114 13 22 chr6 68887444 68887724 -120391830 - AluSx SINE Alu -33 279 1 12792 180 47 30 chr6 68887724 68889458 -120390096 - L1 LINE L1 -4974 2591 12 249 292 31 0 chr6 68889796 68889861 -120389693 - MIR3 SINE MIR -16 192 126 2003 135 44 76 chr6 68890097 68890556 -120388998 + L1MB5 LINE L1 5382 5825 -349 1273 134 0 0 chr6 68890556 68890728 -120388826 + AluSq SINE Alu 1 172 -141 920 103 0 0 chr6 68890780 68890897 -120388657 + AluSq SINE Alu 176 292 -21 2192 137 14 0 chr6 68890897 68891247 -120388307 + L1MB5 LINE L1 5814 6168 -6 1068 184 33 4 chr6 68891292 68891538 -120388016 + MLT1D LTR MaLR 227 348 -42 1458 206 23 17 chr6 68893389 68893738 -120385816 + MLT1A1 LTR MaLR 1 351 -14 1074 204 45 101 chr6 68893956 68894353 -120385201 - MLT1B LTR MaLR -15 375 1 2788 177 43 55 chr6 68895707 68896339 -120383215 + MER82 DNA MER2_type 24 647 -6 825 225 1 69 chr6 68896369 68896420 -120383134 + L1MC/D LINE L1 5289 5342 -822 2495 156 21 7 chr6 68896420 68896838 -120382716 - MSTB LTR MaLR -2 424 1 825 225 1 69 chr6 68896838 68897077 -120382477 + L1MC/D LINE L1 5342 5562 -602 11907 155 23 37 chr6 68897429 68899516 -120380038 - L1M1 LINE L1 -5294 2271 217 2307 81 0 42 chr6 68899516 68899824 -120379730 + AluSg SINE Alu 1 295 -15 11907 155 23 37 chr6 68899824 68900028 -120379526 - L1M1 LINE L1 -7348 217 12 604 309 72 52 chr6 68900262 68900722 -120378832 + L2 LINE L2 1608 2076 -1238 675 276 47 24 chr6 68901088 68901561 -120377993 - LTR33 LTR ERVL 0 521 1 2052 88 4 0 chr6 68902062 68902324 -120377230 - AluSc SINE Alu -8 301 39 269 404 29 10 chr6 68902617 68902825 -120376729 + MLT1K LTR MaLR 129 340 -248 369 153 14 0 chr6 68902831 68902903 -120376651 - LTR67 LTR ERVL -6 551 479 1360 145 45 0 chr6 68902912 68903181 -120376373 + L1MA8 LINE L1 6004 6284 -7 2393 99 0 0 chr6 68903182 68903485 -120376069 - AluSx SINE Alu -9 303 1 322 299 90 90 chr6 68903493 68903992 -120375562 - LTR67 LTR ERVL -51 506 8 658 241 24 67 chr6 68904004 68904257 -120375297 + MLT1K LTR MaLR 345 586 -2 268 247 144 0 chr6 68906686 68906880 -120372674 - L1ME4a LINE L1 -50 6071 5850 309 202 27 28 chr6 68906975 68907105 -120372449 - L1M3 LINE L1 -726 5445 5318 1712 172 32 0 chr6 68908793 68909078 -120370476 + AluJo SINE Alu 3 296 -16 609 309 173 14 chr6 68909090 68909594 -120369960 - MLT1L LTR MaLR -26 589 6 226 268 0 0 chr6 68913048 68913104 -120366450 + MER20B DNA MER1_type 103 158 -625 494 288 48 0 chr6 68913325 68913471 -120366083 + MIR SINE MIR 36 188 -74 544 184 159 10 chr6 68914411 68914618 -120364936 - L1ME4a LINE L1 0 6121 5884 290 87 22 0 chr6 68915010 68915056 -120364498 + (CA)n Simple_repeat Simple_repeat 2 48 0 233 313 55 8 chr6 68915250 68915378 -120364176 - L1ME4a LINE L1 -262 5859 5726 25 0 0 0 chr6 68915398 68915423 -120364131 + AT_rich Low_complexity Low_complexity 1 25 0 191 321 36 36 chr6 68915540 68915652 -120363902 - MIR SINE MIR -92 170 59 189 0 0 0 chr6 68915692 68915713 -120363841 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1990 113 25 4 chr6 68915713 68915987 -120363567 - AluSx SINE Alu -32 280 1 1317 208 135 16 chr6 68918650 68919102 -120360452 - HsTC2a DNA Tc2 -35 707 202 407 312 47 12 chr6 68919378 68919548 -120360006 - HsTC2a DNA Tc2 -567 177 2 235 228 43 87 chr6 68919555 68919647 -120359907 - MIR SINE MIR -69 193 106 533 181 0 114 chr6 68920373 68920522 -120359032 + MER20 DNA MER1_type 81 212 -7 1849 240 92 48 chr6 68920983 68921913 -120357641 - L1MC5 LINE L1 -68 7893 6923 1372 176 109 4 chr6 68921938 68922205 -120357349 - AluJb SINE Alu -17 295 1 917 208 54 13 chr6 68922431 68922759 -120356795 - L1ME3A LINE L1 -1 6161 5812 394 68 0 0 chr6 68922831 68922890 -120356664 - L1MA5 LINE L1 0 6300 6242 216 329 20 7 chr6 68922923 68923069 -120356485 + T-rich Low_complexity Low_complexity 5 152 0 750 267 54 70 chr6 68923170 68923722 -120355832 - MLT1G LTR MaLR -8 559 3 2213 118 3 3 chr6 68923741 68924047 -120355507 - AluSx SINE Alu -6 306 1 1348 120 0 75 chr6 68924533 68924692 -120354862 - MER96B DNA MER1_type? -170 247 114 744 192 8 0 chr6 68924692 68924817 -120354737 - FLAM_A SINE Alu -7 126 1 1348 120 0 75 chr6 68924817 68924924 -120354630 - MER96B DNA MER1_type? -303 114 1 247 303 92 18 chr6 68925154 68925372 -120354182 - L1ME LINE L1 -5594 476 243 257 325 12 0 chr6 68925709 68925792 -120353762 + L2 LINE L2 3223 3306 -7 248 339 71 39 chr6 68928568 68928695 -120350859 + L2 LINE L2 3142 3272 0 28 71 0 0 chr6 68928847 68928903 -120350651 + AT_rich Low_complexity Low_complexity 1 56 0 604 249 0 127 chr6 68929134 68929331 -120350223 - MER5B DNA MER1_type -1 177 6 950 220 33 89 chr6 68930348 68930743 -120348811 + L1ME3 LINE L1 5790 6162 0 472 316 108 22 chr6 68931243 68931474 -120348080 + MIR SINE MIR 12 262 0 2043 142 118 8 chr6 68931803 68932177 -120347377 - MSTA LTR MaLR 0 428 14 1693 160 14 31 chr6 68932858 68933146 -120346408 - AluJo SINE Alu -29 283 1 28 48 0 0 chr6 68934838 68934880 -120344674 + AT_rich Low_complexity Low_complexity 1 42 0 2901 149 39 13 chr6 68934901 68935437 -120344117 - L1MC1 LINE L1 -7 6326 5777 320 45 0 0 chr6 68936459 68936503 -120343051 - L1MC2 LINE L1 -482 5862 5819 329 310 55 7 chr6 68937593 68937738 -120341816 + MIR SINE MIR 4 155 -107 2270 88 0 10 chr6 68938556 68938853 -120340701 + AluSg SINE Alu 16 309 -1 358 266 196 0 chr6 68939124 68939282 -120340272 - MIR SINE MIR -59 203 15 724 187 33 7 chr6 68940523 68940673 -120338881 - MER5A DNA MER1_type 0 189 36 259 277 0 48 chr6 68940695 68940778 -120338776 + MIR SINE MIR 184 262 0 2855 190 16 4 chr6 68941022 68941574 -120337980 - MER89 LTR ERV1 0 559 1 1337 251 38 5 chr6 68941766 68942136 -120337418 - MSTD LTR MaLR -12 384 3 255 310 43 35 chr6 68942352 68942468 -120337086 - MIR SINE MIR 0 262 146 401 206 29 39 chr6 68942477 68942579 -120336975 - MER5A DNA MER1_type -79 110 10 196 237 0 0 chr6 68942671 68942709 -120336845 - L2 LINE L2 -253 3060 3023 2666 237 58 25 chr6 68942794 68943693 -120335861 + L1ME1 LINE L1 5237 6162 -4 277 316 43 71 chr6 68943952 68944303 -120335251 + L1ME LINE L1 5321 5661 -460 715 202 15 10 chr6 68944463 68944661 -120334893 + L1PB4 LINE L1 4451 4649 -1497 3167 159 21 2 chr6 68945027 68946118 -120333436 + L1PB4 LINE L1 4655 5770 -386 919 187 23 0 chr6 68946118 68946288 -120333266 + L1PB4 LINE L1 5976 6150 -6 30 45 0 0 chr6 68946596 68946640 -120332914 + AT_rich Low_complexity Low_complexity 1 44 0 865 248 71 10 chr6 68949311 68949556 -120329998 + MIR SINE MIR 6 262 0 1179 214 75 0 chr6 68949797 68950142 -120329412 - L1MEc LINE L1 -3550 2665 2295 463 308 36 9 chr6 68950168 68950389 -120329165 - L1MEc LINE L1 -4658 1738 1512 290 322 86 13 chr6 68950423 68950575 -120328979 + L2 LINE L2 3142 3304 -9 370 303 101 0 chr6 68951644 68951763 -120327791 - L2 LINE L2 0 3313 3183 413 312 88 23 chr6 68952151 68952366 -120327188 - MIR SINE MIR -2 260 32 265 294 106 0 chr6 68952468 68952553 -120327001 - MIR3 SINE MIR -6 202 109 212 309 72 58 chr6 68953697 68953836 -120325718 + MIR SINE MIR 50 190 -72 257 225 35 70 chr6 68954123 68954265 -120325289 + MER103 DNA DNA 3 139 -27 627 232 26 7 chr6 68955561 68955716 -120323838 - MLT1J LTR MaLR -353 158 1 588 293 104 31 chr6 68956001 68956223 -120323331 - MIR SINE MIR -13 249 12 603 218 147 6 chr6 68957733 68957889 -120321665 + MER5B DNA MER1_type 1 178 0 3905 177 35 20 chr6 68958480 68959283 -120320271 + L1MB3 LINE L1 5366 6180 -3 2505 48 0 0 chr6 68960108 68960398 -120319156 + AluY SINE Alu 22 311 0 552 346 15 10 chr6 68960681 68960886 -120318668 - L1MC/D LINE L1 -2160 5648 5443 2008 149 3 3 chr6 68961110 68961411 -120318143 + AluSx SINE Alu 1 301 -11 607 207 37 53 chr6 68962542 68962577 -120316977 + MER53 DNA DNA 2 36 -153 1984 141 10 16 chr6 68962577 68962883 -120316671 + AluSx SINE Alu 3 306 -6 607 207 37 53 chr6 68962883 68963035 -120316519 + MER53 DNA DNA 36 186 -3 259 250 171 11 chr6 68963043 68963131 -120316423 - L3 LINE CR1 -150 1427 1326 330 206 222 32 chr6 68963149 68963275 -120316279 + MIR SINE MIR 21 170 -92 360 254 169 58 chr6 68963983 68964243 -120315311 - L3 LINE CR1 -554 1023 735 2533 49 0 3 chr6 68965146 68965450 -120314104 + AluY SINE Alu 1 303 -8 801 204 193 46 chr6 68967072 68967533 -120312021 + MLT1E LTR MaLR 1 560 -7 334 183 63 24 chr6 68967670 68967796 -120311758 + L1ME4a LINE L1 5986 6116 -5 2345 95 0 0 chr6 68968249 68968553 -120311001 + AluSg SINE Alu 1 304 -6 267 302 73 39 chr6 68969118 68969297 -120310257 + MIR SINE MIR 65 249 -13 1002 240 94 87 chr6 68970710 68971356 -120308198 + Charlie7 DNA MER1_type 36 686 -1926 334 214 0 34 chr6 68971381 68971470 -120308084 + Charlie7 DNA MER1_type 2527 2612 0 285 167 0 0 chr6 68972548 68972602 -120306952 + A-rich Low_complexity Low_complexity 1 54 0 28 29 0 0 chr6 68973757 68973792 -120305762 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr6 68981311 68981338 -120298216 + AT_rich Low_complexity Low_complexity 1 27 0 237 108 0 0 chr6 68981562 68981599 -120297955 + (A)n Simple_repeat Simple_repeat 1 37 0 24 53 0 0 chr6 68983206 68983244 -120296310 + AT_rich Low_complexity Low_complexity 1 38 0 240 35 0 0 chr6 68983856 68983885 -120295669 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 29 28 0 0 chr6 68984939 68984975 -120294579 + AT_rich Low_complexity Low_complexity 1 36 0 286 194 42 0 chr6 68986179 68986251 -120293303 - MER116 DNA Mariner 0 80 6 387 0 0 0 chr6 68986483 68986526 -120293028 + (CA)n Simple_repeat Simple_repeat 2 44 0 197 311 67 22 chr6 68988594 68988684 -120290870 - MIR SINE MIR -112 150 57 763 209 104 43 chr6 68988685 68988915 -120290639 - MIR SINE MIR -1 261 18 2248 93 0 17 chr6 68989903 68990215 -120289339 + AluSx SINE Alu 1 307 0 1445 125 19 9 chr6 68990472 68990688 -120288866 + AluJb SINE Alu 91 308 -4 369 0 0 0 chr6 68991096 68991137 -120288417 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr6 68992101 68992130 -120287424 + AT_rich Low_complexity Low_complexity 1 29 0 2126 92 24 7 chr6 68992376 68992670 -120286884 + AluSg SINE Alu 1 299 -11 1761 156 58 3 chr6 68993396 68993722 -120285832 + MER2 DNA MER2_type 1 344 -1 4878 170 8 15 chr6 68994522 68995627 -120283927 + L1PB4 LINE L1 5042 6142 -14 270 0 0 0 chr6 68999229 68999259 -120280295 + (T)n Simple_repeat Simple_repeat 1 30 0 204 200 0 0 chr6 68999588 68999643 -120279911 + (CA)n Simple_repeat Simple_repeat 2 56 0 219 133 0 44 chr6 69000021 69000066 -120279488 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 731 261 17 25 chr6 69001459 69001724 -120277830 - L1ME2 LINE L1 -1 6163 5905 2727 26 0 0 chr6 69001783 69002089 -120277465 + AluYa5 SINE Alu 1 306 -5 465 383 17 20 chr6 69002294 69002589 -120276965 - L2 LINE L2 -438 2876 2583 789 173 194 5 chr6 69003075 69003352 -120276202 + MER47A DNA MER2_type 2 366 0 182 259 103 17 chr6 69003581 69003639 -120275915 - MER5B DNA MER1_type 0 178 116 1887 121 24 20 chr6 69008291 69008588 -120270966 + AluSx SINE Alu 1 298 -14 459 197 0 0 chr6 69010176 69010252 -120269302 + MIR SINE MIR 73 148 -60 496 153 73 24 chr6 69010671 69010795 -120268759 - L1MB7 LINE L1 -20 6164 6035 26 30 0 0 chr6 69011190 69011223 -120268331 + AT_rich Low_complexity Low_complexity 1 33 0 3801 33 0 0 chr6 69012425 69012876 -120266678 + L1PA3 LINE L1 5702 6152 -3 2571 61 0 0 chr6 69064272 69064582 -120214972 - AluY SINE Alu -1 310 1 369 328 123 0 chr6 69064631 69064802 -120214752 + MIR SINE MIR 41 232 -30 210 184 41 0 chr6 69066634 69066683 -120212871 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 206 319 70 32 chr6 69068093 69068250 -120211304 + L2 LINE L2 2220 2382 -932 297 305 60 92 chr6 69068513 69068555 -120210999 + L2 LINE L2 2575 2617 -697 943 184 27 5 chr6 69068555 69068740 -120210814 - MER5A DNA MER1_type 0 189 1 297 305 60 92 chr6 69068740 69068946 -120210608 + L2 LINE L2 2617 2815 -499 205 325 65 16 chr6 69069014 69069137 -120210417 + L2 LINE L2 2931 3059 -213 314 311 17 25 chr6 69069739 69069858 -120209696 - MIR SINE MIR -11 251 134 211 288 58 72 chr6 69071333 69071472 -120208082 - MIR SINE MIR -106 156 20 22 35 0 0 chr6 69072166 69072195 -120207359 + AT_rich Low_complexity Low_complexity 1 29 0 34 42 0 0 chr6 69072621 69072669 -120206885 + AT_rich Low_complexity Low_complexity 1 48 0 13352 83 16 10 chr6 69072791 69075307 -120204247 - L1PA7 LINE L1 -3 6466 3934 2322 110 3 0 chr6 69075307 69075617 -120203937 - AluY SINE Alu 0 311 1 13352 83 16 10 chr6 69075617 69075784 -120203770 - L1PA7 LINE L1 -2535 3934 3769 7827 85 5 1 chr6 69075784 69076860 -120202694 - L1PA7 LINE L1 -5381 1080 1 269 320 39 48 chr6 69077128 69077231 -120202323 + MIR SINE MIR 8 109 -153 21 0 0 0 chr6 69077627 69077648 -120201906 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 69078308 69078335 -120201219 + AT_rich Low_complexity Low_complexity 1 27 0 2353 92 0 10 chr6 69079239 69079544 -120200010 + AluY SINE Alu 1 302 -9 3351 125 31 4 chr6 69080370 69080883 -120198671 - MER1A DNA MER1_type 0 527 1 29 28 0 0 chr6 69082251 69082287 -120197267 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 69084180 69084201 -120195353 + AT_rich Low_complexity Low_complexity 1 21 0 1198 167 0 0 chr6 69085380 69085578 -120193976 + L1PA16 LINE L1 5968 6165 -1 431 167 67 0 chr6 69085769 69085857 -120193697 + MLT1A1 LTR MaLR 1 94 -280 279 264 0 66 chr6 69085857 69085948 -120193606 + MER21B LTR ERV1 1 85 -778 386 243 0 0 chr6 69085975 69086049 -120193505 + MER21B LTR ERV1 19 92 -771 3377 185 58 36 chr6 69086053 69086707 -120192847 + MER21B LTR ERV1 49 724 -139 204 40 0 0 chr6 69086707 69086732 -120192822 + (AATTG)n Simple_repeat Simple_repeat 2 26 0 3377 185 58 36 chr6 69086732 69086854 -120192700 + MER21B LTR ERV1 724 842 -21 845 222 42 23 chr6 69086878 69087139 -120192415 + MLT1A1 LTR MaLR 89 354 -11 279 194 0 30 chr6 69087546 69087613 -120191941 + Charlie7 DNA MER1_type 39 103 -2509 260 277 60 30 chr6 69087600 69087766 -120191788 + Charlie7 DNA MER1_type 2437 2607 -5 * 313 183 183 0 chr6 69088115 69088186 -120191368 - AluJ/FLAM SINE Alu -218 84 1 1263 203 8 17 chr6 69088340 69088581 -120190973 + AluJb SINE Alu 54 292 -20 757 189 17 28 chr6 69090285 69090465 -120189089 - MER3 DNA MER1_type 0 209 32 1544 159 15 30 chr6 69090468 69090738 -120188816 + AluJo SINE Alu 6 271 -41 264 91 0 0 chr6 69090754 69090798 -120188756 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1837 171 0 16 chr6 69090918 69091233 -120188321 - AluJb SINE Alu -2 310 1 225 0 0 0 chr6 69091250 69091275 -120188279 + (A)n Simple_repeat Simple_repeat 1 25 0 255 321 104 52 chr6 69091977 69092398 -120187156 + L2 LINE L2 2286 2728 -586 1981 161 66 5 chr6 69092398 69092593 -120186961 + MSTA LTR MaLR 1 183 -245 186 43 0 0 chr6 69092593 69092616 -120186938 + (TC)n Simple_repeat Simple_repeat 1 23 0 1981 161 66 5 chr6 69092616 69092798 -120186756 + MSTA LTR MaLR 183 401 -27 25676 30 2 0 chr6 69092800 69096785 -120182769 - L1PA4 LINE L1 -1 6154 2161 11456 48 0 5 chr6 69096784 69098296 -120181258 + L1PA4 LINE L1 669 2173 -3973 * 233 94 0 0 chr6 69098296 69098328 -120181226 + MSTA LTR MaLR 386 417 -9 329 364 108 19 chr6 69098551 69098820 -120180734 + L2 LINE L2 2976 3268 -4 700 200 13 32 chr6 69101628 69101783 -120177771 - L2 LINE L2 -1 3312 3161 2224 98 3 46 chr6 69101889 69102215 -120177339 + AluSx SINE Alu 1 312 0 2242 97 0 7 chr6 69103432 69103732 -120175822 + AluY SINE Alu 1 298 -13 409 234 51 22 chr6 69104946 69105083 -120174471 + MIR SINE MIR 88 228 -34 342 276 238 38 chr6 69105348 69105743 -120173811 + L2 LINE L2 2808 3281 -32 285 229 33 0 chr6 69105857 69105918 -120173636 + L2 LINE L2 3236 3298 -15 286 268 144 20 chr6 69106036 69106189 -120173365 - MIR3 SINE MIR -36 172 1 2200 117 0 0 chr6 69106197 69106525 -120173029 - AluSc SINE Alu 0 309 1 1881 158 10 0 chr6 69107161 69107452 -120172102 + AluJo SINE Alu 3 296 -16 566 293 73 14 chr6 69107464 69107700 -120171854 + MIR SINE MIR 23 262 0 26 0 0 0 chr6 69108924 69108950 -120170604 + AT_rich Low_complexity Low_complexity 1 26 0 884 291 55 0 chr6 69111061 69111298 -120168256 - MIR SINE MIR -11 251 2 22 35 0 0 chr6 69111920 69111949 -120167605 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 69112033 69112062 -120167492 + AT_rich Low_complexity Low_complexity 1 29 0 1762 137 105 0 chr6 69112426 69112741 -120166813 + MER7A DNA MER2_type 1 346 0 24 0 0 0 chr6 69112821 69112845 -120166709 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 69114652 69114681 -120164873 + AT_rich Low_complexity Low_complexity 1 29 0 219 245 0 0 chr6 69116382 69116431 -120163123 + (CAT)n Simple_repeat Simple_repeat 3 51 0 21 0 0 0 chr6 69119614 69119635 -120159919 + AT_rich Low_complexity Low_complexity 1 21 0 292 260 179 21 chr6 69121393 69121537 -120158017 + MIR SINE MIR 23 188 -58 1553 201 10 7 chr6 69122286 69122574 -120156980 + AluJb SINE Alu 1 289 -23 1123 129 7 0 chr6 69123077 69123232 -120156322 + AluJb SINE Alu 132 287 -25 252 307 0 11 chr6 69124372 69124460 -120155094 + MIR SINE MIR 66 152 -110 22 0 0 0 chr6 69131149 69131171 -120148383 + AT_rich Low_complexity Low_complexity 1 22 0 183 336 149 0 chr6 69131208 69131315 -120148239 - MIR3 SINE MIR -71 137 15 2298 71 16 23 chr6 69132487 69132795 -120146759 + AluSg1 SINE Alu 1 306 -3 827 179 24 6 chr6 69135120 69135288 -120144266 + L1MB4 LINE L1 6010 6180 0 7109 126 47 14 chr6 69135635 69136826 -120142728 + Tigger3b DNA MER2_type 2 1231 0 2245 113 0 0 chr6 69140980 69141281 -120138273 - AluSx SINE Alu -11 301 1 48 32 0 0 chr6 69141301 69141363 -120138191 + AT_rich Low_complexity Low_complexity 1 62 0 191 343 14 14 chr6 69141772 69141842 -120137712 + L2 LINE L2 3191 3260 -12 29 110 0 0 chr6 69142533 69142660 -120136894 + AT_rich Low_complexity Low_complexity 1 127 0 2713 7 0 0 chr6 69143432 69143724 -120135830 - AluYa5 SINE Alu -19 292 1 2054 87 33 7 chr6 69143724 69144000 -120135554 - AluSp SINE Alu -30 283 1 232 343 15 0 chr6 69144145 69144212 -120135342 + L2 LINE L2 3246 3313 0 951 249 3 87 chr6 69145205 69145539 -120134015 + L2 LINE L2 3006 3311 -2 189 0 0 0 chr6 69146434 69146455 -120133099 + (TA)n Simple_repeat Simple_repeat 1 21 0 276 130 0 0 chr6 69146455 69146501 -120133053 + (CA)n Simple_repeat Simple_repeat 1 46 0 259 267 47 0 chr6 69146536 69146622 -120132932 + L1MC4 LINE L1 6614 6703 -1339 2216 118 0 3 chr6 69146998 69147312 -120132242 + AluSq SINE Alu 1 313 0 31 0 0 0 chr6 69148296 69148327 -120131227 + AT_rich Low_complexity Low_complexity 1 31 0 282 342 54 33 chr6 69148989 69149173 -120130381 - MIR SINE MIR -1 261 74 1047 172 50 0 chr6 69150852 69151050 -120128504 + L1MC2 LINE L1 6117 6324 -20 315 191 175 63 chr6 69151181 69151307 -120128247 - L1ME LINE L1 -400 5721 5582 306 0 0 0 chr6 69151314 69151348 -120128206 + (GA)n Simple_repeat Simple_repeat 2 35 0 2004 138 0 3 chr6 69151503 69151799 -120127755 + AluSx SINE Alu 1 295 -17 275 59 0 0 chr6 69153973 69154007 -120125547 + U2 snRNA snRNA 1 34 -154 655 276 66 22 chr6 69154071 69154299 -120125255 - MIR SINE MIR -12 250 13 407 288 77 68 chr6 69154648 69154971 -120124583 - L2 LINE L2 -22 3291 2966 2374 122 28 0 chr6 69155015 69155369 -120124185 + THE1B LTR MaLR 1 364 0 196 333 0 0 chr6 69155919 69155973 -120123581 - MIR SINE MIR -68 140 87 2365 94 0 0 chr6 69157887 69158184 -120121370 - AluSx SINE Alu -15 297 1 486 300 12 18 chr6 69159106 69159276 -120120278 + MER117 DNA MER1_type 29 197 0 207 0 0 0 chr6 69160524 69160547 -120119007 + (A)n Simple_repeat Simple_repeat 1 23 0 2289 97 3 0 chr6 69163602 69163900 -120115654 + AluSq SINE Alu 1 299 -14 210 250 0 0 chr6 69164785 69164873 -120114681 + (TA)n Simple_repeat Simple_repeat 1 88 0 2329 98 0 0 chr6 69165077 69165382 -120114172 + AluSx SINE Alu 1 305 -7 444 351 104 23 chr6 69165874 69166182 -120113372 + L2 LINE L2 2903 3235 -37 799 275 17 17 chr6 69166653 69166889 -120112665 - MIR SINE MIR -7 255 20 233 209 127 100 chr6 69167175 69167285 -120112269 + MER5A DNA MER1_type 74 186 -3 1134 172 33 5 chr6 69167739 69167954 -120111600 + L1MB3 LINE L1 5955 6175 -8 2122 128 0 3 chr6 69167958 69168264 -120111290 - AluSx SINE Alu -7 305 1 1001 67 0 37 chr6 69168268 69168403 -120111151 - AluSc SINE Alu -18 291 162 255 246 149 26 chr6 69168471 69168585 -120110969 + MIR SINE MIR 18 145 -63 244 265 88 0 chr6 69168901 69168969 -120110585 - L2 LINE L2 0 3313 3240 199 345 166 24 chr6 69169032 69169441 -120110113 - L2 LINE L2 -337 2977 2511 1344 345 119 26 chr6 69169462 69170533 -120109021 - L2 LINE L2 -1098 2216 1047 222 37 0 0 chr6 69170812 69170839 -120108715 + (A)n Simple_repeat Simple_repeat 1 27 0 2285 81 0 3 chr6 69171789 69172086 -120107468 - AluSq SINE Alu -17 296 1 663 230 115 13 chr6 69172384 69172655 -120106899 + L1MC/D LINE L1 5529 5822 -299 2043 107 0 31 chr6 69172856 69173196 -120106358 + AluSx SINE Alu 1 331 0 28 61 0 0 chr6 69174144 69174193 -120105361 + AT_rich Low_complexity Low_complexity 1 49 0 255 293 27 106 chr6 69175768 69175858 -120103696 + MIR SINE MIR 61 130 -132 1119 126 68 5 chr6 69175858 69176048 -120103506 + L1PA16 LINE L1 5956 6157 -9 255 293 27 106 chr6 69176048 69176145 -120103409 + MIR SINE MIR 130 233 -29 28 71 0 0 chr6 69176453 69176509 -120103045 + AT_rich Low_complexity Low_complexity 1 56 0 816 159 0 0 chr6 69176936 69177062 -120102492 - AluJ SINE Alu -14 298 173 1093 153 0 0 chr6 69177245 69177408 -120102146 - AluJ SINE Alu -149 163 1 186 189 0 0 chr6 69178011 69178048 -120101506 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 574 146 0 0 chr6 69178135 69178224 -120101330 - FLAM_A SINE Alu -14 128 40 2002 108 0 82 chr6 69178658 69178973 -120100581 + AluSq SINE Alu 1 289 -24 30 0 0 0 chr6 69178973 69179003 -120100551 + AT_rich Low_complexity Low_complexity 1 30 0 267 286 14 0 chr6 69179063 69179133 -120100421 + GA-rich Low_complexity Low_complexity 3 73 0 449 324 108 6 chr6 69179134 69179310 -120100244 + MIR SINE MIR 20 213 -49 2196 106 0 0 chr6 69179532 69179815 -120099739 + AluSx SINE Alu 21 303 -9 879 239 108 0 chr6 69179870 69180083 -120099471 + MIR SINE MIR 19 254 -8 378 115 0 0 chr6 69180311 69180372 -120099182 + (TG)n Simple_repeat Simple_repeat 2 62 0 1305 188 118 7 chr6 69180426 69180697 -120098857 - AluJb SINE Alu -11 301 1 21 36 0 0 chr6 69180752 69180780 -120098774 + AT_rich Low_complexity Low_complexity 1 28 0 191 143 0 0 chr6 69181058 69181086 -120098468 - L2 LINE L2 -23 3290 3263 * 378 273 39 39 chr6 69181064 69181218 -120098336 + MIR SINE MIR 106 259 -3 192 255 0 0 chr6 69181295 69181342 -120098212 - MIR SINE MIR -112 150 104 198 291 151 12 chr6 69181815 69181901 -120097653 - MIR SINE MIR -59 149 52 349 345 88 20 chr6 69182054 69182202 -120097352 + MIR3 SINE MIR 37 194 -14 354 253 236 35 chr6 69182800 69182974 -120096580 + MIR SINE MIR 50 258 -4 1102 158 43 11 chr6 69183171 69183355 -120096199 + AluJo SINE Alu 1 190 -122 1379 118 132 9 chr6 69283358 69283586 -119995968 - MER4B LTR ERV1 -354 256 1 2514 140 20 10 chr6 69283665 69283786 -119995768 - MER41B LTR ERV1 0 635 517 1944 133 7 7 chr6 69283786 69284095 -119995459 + AluSc SINE Alu 1 309 0 2514 140 20 10 chr6 69284095 69284374 -119995180 - MER41B LTR ERV1 -118 517 231 403 138 0 0 chr6 69284475 69284533 -119995021 + AluSg/x SINE Alu 214 271 -29 2987 168 20 18 chr6 69284533 69285094 -119994460 - MSTD-int LTR MaLR -1172 563 2 1009 192 10 21 chr6 69285096 69285289 -119994265 - MSTD LTR MaLR 0 396 206 1185 133 0 6 chr6 69285308 69285489 -119994065 - AluSq SINE Alu -4 309 130 2019 127 7 3 chr6 69285650 69285949 -119993605 - AluSx SINE Alu -12 300 1 2868 218 25 73 chr6 69285951 69286727 -119992827 - L1MC5 LINE L1 -433 7528 6804 2170 74 20 3 chr6 69286727 69287025 -119992529 - AluY SINE Alu -8 303 1 2868 218 25 73 chr6 69287025 69287187 -119992367 - L1MC5 LINE L1 -1157 6804 6636 1898 156 0 6 chr6 69287237 69287551 -119992003 - AluSx SINE Alu 0 312 1 808 102 0 0 chr6 69287802 69287936 -119991618 + AluSg/x SINE Alu 172 305 0 1928 105 25 0 chr6 69288911 69289197 -119990357 - AluSx SINE Alu -19 293 1 360 176 0 0 chr6 69289557 69289625 -119989929 + (CA)n Simple_repeat Simple_repeat 1 68 0 1127 165 10 0 chr6 69289741 69289935 -119989619 - AluJo SINE Alu -9 303 108 1423 85 33 24 chr6 69290043 69290255 -119989299 + AluSq SINE Alu 87 300 -13 213 121 0 0 chr6 69290517 69290550 -119989004 + (A)n Simple_repeat Simple_repeat 1 33 0 1397 153 70 35 chr6 69290627 69290914 -119988640 - AluJb SINE Alu -15 297 1 2367 83 0 0 chr6 69291176 69291477 -119988077 + AluSq SINE Alu 1 301 -12 434 253 133 18 chr6 69291609 69291775 -119987779 + MIR3 SINE MIR 8 192 -16 539 233 25 149 chr6 69291949 69292076 -119987478 + MIR SINE MIR 10 151 -111 811 174 8 0 chr6 69292076 69292208 -119987346 - FLAM_C SINE Alu 0 133 1 539 233 25 149 chr6 69292208 69292280 -119987274 + MIR SINE MIR 151 168 -94 1583 158 0 24 chr6 69292280 69292578 -119986976 - AluJo SINE Alu -21 291 1 539 233 25 149 chr6 69292578 69292652 -119986902 + MIR SINE MIR 168 250 -12 960 158 5 59 chr6 69292753 69292956 -119986598 - AluJo SINE Alu -120 192 1 400 284 37 0 chr6 69292957 69293066 -119986488 - MIR SINE MIR -116 146 34 845 159 12 0 chr6 69293113 69293276 -119986278 - MER96B DNA MER1_type? -12 405 241 2095 120 0 0 chr6 69293862 69294161 -119985393 - AluSx SINE Alu -13 299 1 26 0 0 0 chr6 69294274 69294300 -119985254 + AT_rich Low_complexity Low_complexity 1 26 0 409 110 65 13 chr6 69294300 69294455 -119985099 + (TTATA)n Simple_repeat Simple_repeat 4 166 0 25 0 0 0 chr6 69294455 69294480 -119985074 + AT_rich Low_complexity Low_complexity 1 25 0 1379 195 0 50 chr6 69294497 69294794 -119984760 - AluJb SINE Alu -30 282 1 568 309 55 27 chr6 69295464 69295684 -119983870 + MIR SINE MIR 36 261 -1 1636 142 18 14 chr6 69295703 69296020 -119983534 - AluJb SINE Alu 0 318 1 23 0 0 0 chr6 69296023 69296046 -119983508 + AT_rich Low_complexity Low_complexity 1 23 0 713 186 8 0 chr6 69296046 69296170 -119983384 - FLAM_C SINE Alu -17 126 2 845 107 0 33 chr6 69296495 69296617 -119982937 + FLAM_C SINE Alu 1 118 -15 26 50 0 0 chr6 69296617 69296657 -119982897 + AT_rich Low_complexity Low_complexity 1 40 0 2066 105 54 0 chr6 69296660 69296954 -119982600 + AluSx SINE Alu 1 310 -2 1125 199 58 19 chr6 69297196 69297457 -119982097 - AluJo SINE Alu -41 271 1 567 43 0 0 chr6 69298755 69298825 -119980729 + (GA)n Simple_repeat Simple_repeat 1 70 0 1859 129 4 4 chr6 69299355 69299635 -119979919 - AluSx SINE Alu -32 280 1 256 365 26 17 chr6 69299641 69299756 -119979798 + L2 LINE L2 3198 3313 0 1813 123 0 57 chr6 69299940 69300257 -119979297 - AluSx SINE Alu -7 305 7 536 304 0 22 chr6 69300722 69300860 -119978694 - L2 LINE L2 -2 3311 3177 * 927 265 49 4 chr6 69300847 69301092 -119978462 - MIR SINE MIR 0 262 7 214 308 0 0 chr6 69301100 69301152 -119978402 - L2 LINE L2 -71 3242 3191 23 42 0 21 chr6 69301288 69301313 -119978241 + AT_rich Low_complexity Low_complexity 1 26 -21 2214 79 0 0 chr6 69301313 69301592 -119977962 - AluSq SINE Alu -25 288 10 23 42 0 21 chr6 69301592 69301614 -119977940 + AT_rich Low_complexity Low_complexity 26 47 0 22 0 0 0 chr6 69301904 69301926 -119977628 + AT_rich Low_complexity Low_complexity 1 22 0 526 291 96 11 chr6 69302027 69302298 -119977256 + L1MC4a LINE L1 5639 5932 -1876 1777 179 0 0 chr6 69303133 69303430 -119976124 + AluJb SINE Alu 1 297 -15 58 96 0 0 chr6 69303431 69303608 -119975946 + AT_rich Low_complexity Low_complexity 1 177 0 453 228 10 10 chr6 69303612 69303713 -119975841 - AluJb SINE Alu -7 305 205 438 128 116 0 chr6 69303818 69303904 -119975650 - MLT2B1 LTR ERVL -421 99 4 2213 110 3 0 chr6 69303907 69304217 -119975337 + AluSx SINE Alu 1 311 -1 734 235 80 84 chr6 69304385 69304636 -119974918 + MIR SINE MIR 2 251 -11 2246 89 3 0 chr6 69305886 69306179 -119973375 - AluSp SINE Alu -19 294 1 1968 192 45 3 chr6 69306210 69306585 -119972969 - MSTD LTR MaLR -5 391 1 3133 224 108 92 chr6 69306585 69306919 -119972635 - MSTD-int LTR MaLR 0 1735 1408 2278 95 0 0 chr6 69306919 69307223 -119972331 + AluSc SINE Alu 1 304 -5 3133 224 108 92 chr6 69307223 69307734 -119971820 - MSTD-int LTR MaLR -327 1408 865 186 43 0 0 chr6 69307734 69307757 -119971797 + (TA)n Simple_repeat Simple_repeat 1 23 0 3133 224 108 92 chr6 69307757 69308045 -119971509 - MSTD-int LTR MaLR -870 865 583 1177 104 29 6 chr6 69308048 69308221 -119971333 + AluSq SINE Alu 3 179 -134 1551 96 5 0 chr6 69308321 69308530 -119971024 - AluSx SINE Alu -102 210 1 318 267 67 9 chr6 69308567 69308672 -119970882 + MIR SINE MIR 150 260 -2 517 346 0 13 chr6 69309023 69309179 -119970375 - MIR SINE MIR -94 168 15 576 312 107 34 chr6 69309238 69309368 -119970186 + L3 LINE CR1 1238 1357 -220 1938 139 0 16 chr6 69309368 69309685 -119969869 - AluSx SINE Alu 0 312 1 576 312 107 34 chr6 69309685 69309810 -119969744 + L3 LINE CR1 1357 1520 -57 1853 191 13 27 chr6 69309810 69310186 -119969368 - MLT1A2 LTR MaLR 0 374 4 576 312 107 34 chr6 69310186 69310227 -119969327 + L3 LINE CR1 1520 1557 -20 2067 117 17 0 chr6 69310285 69310576 -119968978 + AluSx SINE Alu 1 296 -16 692 136 0 0 chr6 69310596 69310699 -119968855 - FLAM_C SINE Alu -20 123 21 2122 108 7 0 chr6 69310733 69311021 -119968533 + AluSx SINE Alu 1 290 -22 293 241 15 139 chr6 69311058 69311195 -119968359 + L2 LINE L2 3144 3263 -9 263 200 0 0 chr6 69311597 69311647 -119967907 - MIR SINE MIR -113 149 100 1752 142 17 34 chr6 69311647 69311942 -119967612 + AluSp SINE Alu 1 290 -23 1077 176 4 73 chr6 69312055 69312327 -119967227 + AluJo SINE Alu 1 253 -59 508 91 0 0 chr6 69312327 69312393 -119967161 - FRAM SINE Alu -80 96 31 235 134 10 0 chr6 69312441 69312561 -119966993 + AluJ/FLAM SINE Alu 2 106 -196 323 169 0 84 chr6 69312668 69312705 -119966849 - Charlie5 DNA MER1_type -6 2579 2551 2000 116 7 0 chr6 69312705 69312999 -119966555 - AluSx SINE Alu -16 296 1 323 169 0 84 chr6 69312999 69313044 -119966510 - Charlie5 DNA MER1_type -34 2551 2504 1513 178 0 41 chr6 69313044 69313337 -119966217 + AluJo SINE Alu 1 281 -31 1394 189 29 0 chr6 69313347 69313627 -119965927 + AluJo SINE Alu 1 288 -24 739 207 0 14 chr6 69313639 69313779 -119965775 - MER3 DNA MER1_type -71 138 1 240 235 173 12 chr6 69314177 69314258 -119965296 + MIR SINE MIR 47 140 -68 2097 137 0 13 chr6 69314330 69314637 -119964917 + AluSx SINE Alu 3 305 -7 613 202 46 64 chr6 69314818 69314956 -119964598 + MER5A DNA MER1_type 14 150 -39 1628 146 34 37 chr6 69314956 69315221 -119964333 + MER33 DNA MER1_type 3 270 -2315 2136 91 0 0 chr6 69315221 69315513 -119964041 - AluSx SINE Alu 0 311 20 1628 146 34 37 chr6 69315513 69315568 -119963986 + MER33 DNA MER1_type 270 324 0 613 202 46 64 chr6 69315568 69315602 -119963952 + MER5A DNA MER1_type 150 183 -6 2130 97 3 47 chr6 69315881 69316205 -119963349 - AluSx SINE Alu 0 311 1 242 185 0 99 chr6 69316205 69316286 -119963268 - MIR SINE MIR -66 196 124 1519 155 0 0 chr6 69316531 69316770 -119962784 + AluSx SINE Alu 60 298 -14 1998 145 0 7 chr6 69317491 69317795 -119961759 - AluSx SINE Alu -9 303 2 225 167 30 38 chr6 69317846 69317978 -119961576 + (TA)n Simple_repeat Simple_repeat 2 132 0 332 242 17 83 chr6 69318038 69318126 -119961428 + L2 LINE L2 3202 3283 -30 1996 103 33 0 chr6 69318126 69318437 -119961117 - AluSx SINE Alu 0 322 3 332 242 17 83 chr6 69318437 69318467 -119961087 + L2 LINE L2 3283 3313 0 1295 201 54 56 chr6 69318558 69318842 -119960712 + Charlie4a DNA MER1_type 9 293 -1668 1125 248 9 0 chr6 69318842 69319064 -119960490 + MER58A DNA MER1_type 1 224 0 1295 201 54 56 chr6 69319064 69319171 -119960383 + Charlie4a DNA MER1_type 293 399 -109 652 118 49 69 chr6 69319273 69319417 -119960137 + L1MB8 LINE L1 6029 6169 -9 224 114 29 29 chr6 69319457 69319527 -119960027 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 4239 131 34 103 chr6 69319588 69321095 -119958459 + pTR5 LTR ERV1 743 2606 0 288 133 0 0 chr6 69321190 69321235 -119958319 + Alu SINE Alu 1 45 -257 980 106 0 0 chr6 69321235 69321367 -119958187 + AluSg/x SINE Alu 154 285 -25 210 143 0 0 chr6 69321368 69321403 -119958151 + (TATAA)n Simple_repeat Simple_repeat 3 37 0 1048 160 45 5 chr6 69321417 69321617 -119957937 + MER3 DNA MER1_type 2 209 0 382 286 0 0 chr6 69322173 69322285 -119957269 - MIR SINE MIR 0 262 151 343 331 77 0 chr6 69323517 69323647 -119955907 - MIR SINE MIR -52 210 71 2198 102 3 0 chr6 69324317 69324633 -119954921 - AluSq SINE Alu 0 317 1 233 219 123 0 chr6 69325184 69325257 -119954297 + L1ME LINE L1 5488 5569 -601 2101 123 0 7 chr6 69325363 69325656 -119953898 + AluSx SINE Alu 1 291 -21 908 265 92 26 chr6 69325658 69326080 -119953474 - HAL1b LINE L1 -28 1320 871 422 230 79 0 chr6 69326064 69326190 -119953364 - L1MC5 LINE L1 -36 7925 7790 * 259 250 19 67 chr6 69326210 69326229 -119953325 + CT-rich Low_complexity Low_complexity 2 20 -80 2306 116 3 0 chr6 69326229 69326540 -119953014 - AluSx SINE Alu 0 312 1 259 250 19 67 chr6 69326540 69326624 -119952930 + CT-rich Low_complexity Low_complexity 20 100 0 228 250 59 0 chr6 69326624 69326692 -119952862 - L1MC5 LINE L1 -158 7803 7732 647 215 60 84 chr6 69326699 69326997 -119952557 - HAL1b LINE L1 -436 912 622 196 164 0 36 chr6 69327003 69327058 -119952496 + T-rich Low_complexity Low_complexity 2 54 0 816 150 0 17 chr6 69327064 69327237 -119952317 + CT-rich Low_complexity Low_complexity 2 171 0 1787 183 13 10 chr6 69327241 69327547 -119952007 - AluJo SINE Alu -5 307 1 573 277 100 28 chr6 69327558 69328014 -119951540 - HAL1b LINE L1 -739 609 67 1268 162 17 120 chr6 69328205 69328556 -119950998 - L1MB8 LINE L1 -2 6176 5862 1297 130 77 5 chr6 69328571 69328778 -119950776 - AluJo SINE Alu -27 285 64 904 145 0 0 chr6 69328881 69329005 -119950549 - AluJb SINE Alu -152 160 37 2383 216 34 7 chr6 69329024 69329618 -119949936 - L1MB8 LINE L1 -772 5374 4765 233 29 29 0 chr6 69329713 69329747 -119949807 + (TC)n Simple_repeat Simple_repeat 2 36 0 482 304 95 29 chr6 69330519 69330865 -119948689 + L1ME4a LINE L1 5547 5915 -206 1557 185 20 34 chr6 69331125 69331423 -119948131 + AluJb SINE Alu 1 294 -18 422 204 10 0 chr6 69331423 69331521 -119948033 + GA-rich Low_complexity Low_complexity 2 100 0 262 311 143 19 chr6 69331539 69331700 -119947854 + MIR SINE MIR 72 252 -10 714 153 9 0 chr6 69332300 69332411 -119947143 - FLAM_A SINE Alu -30 112 1 254 50 25 0 chr6 69332418 69332458 -119947096 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1962 120 0 63 chr6 69332876 69333192 -119946362 - AluJb SINE Alu -16 296 1 718 252 126 5 chr6 69333395 69333601 -119945953 - MIR SINE MIR -11 251 21 878 239 32 25 chr6 69334007 69334287 -119945267 + L1MC2 LINE L1 2464 2745 -3401 1848 136 3 45 chr6 69334288 69334596 -119944958 - AluJo SINE Alu -17 295 1 467 192 104 0 chr6 69334596 69334778 -119944776 + L1MC2 LINE L1 3032 3232 -2914 400 164 0 0 chr6 69334778 69334839 -119944715 + AluS SINE Alu 1 61 -247 5362 217 35 20 chr6 69334961 69335038 -119944516 + L1MC2 LINE L1 3209 3283 -2863 2363 103 6 0 chr6 69335038 69335349 -119944205 + AluSp SINE Alu 1 313 0 5362 217 35 20 chr6 69335349 69336620 -119942934 + L1MC2 LINE L1 3283 4577 -1569 3174 172 64 22 chr6 69336619 69337335 -119942219 + L1MC2 LINE L1 5597 6342 -2 * 2129 128 10 0 chr6 69337387 69337684 -119941870 - AluSx SINE Alu -12 300 1 289 240 136 26 chr6 69337747 69337901 -119941653 + L1ME4a LINE L1 5569 5739 -382 21 57 0 0 chr6 69338013 69338048 -119941506 + AT_rich Low_complexity Low_complexity 1 35 0 3940 153 23 23 chr6 69338054 69338787 -119940767 + L1MB3 LINE L1 5447 6179 -4 528 167 21 10 chr6 69338880 69338976 -119940578 + MER4A LTR ERV1 1 97 -567 1787 125 20 39 chr6 69338976 69339328 -119940226 + MER4A LTR ERV1 261 664 0 33 0 0 0 chr6 69339590 69339623 -119939931 + AT_rich Low_complexity Low_complexity 1 33 0 496 223 50 22 chr6 69339704 69339843 -119939711 - L1ME2 LINE L1 -14 6150 6008 377 202 149 9 chr6 69339922 69340036 -119939518 + L1ME4a LINE L1 5960 6089 -32 397 314 14 7 chr6 69340610 69340750 -119938804 + MIR SINE MIR 13 153 -109 740 218 19 16 chr6 69340756 69340932 -119938622 - MIR SINE MIR -55 207 34 562 184 16 0 chr6 69341438 69341563 -119937991 + CT-rich Low_complexity Low_complexity 3 129 0 292 368 39 7 chr6 69341781 69341936 -119937618 - MIR SINE MIR -71 191 32 435 298 40 36 chr6 69342207 69342242 -119937312 + MIR SINE MIR 31 64 -198 1898 126 11 18 chr6 69342242 69342528 -119937026 - AluJo SINE Alu -24 288 5 435 298 40 36 chr6 69342528 69342717 -119936837 + MIR SINE MIR 64 256 -6 540 55 0 0 chr6 69342743 69342816 -119936738 - Alu SINE Alu -9 302 230 2234 110 13 0 chr6 69342953 69343261 -119936293 + AluSx SINE Alu 1 312 0 1738 161 6 61 chr6 69343461 69343791 -119935763 - AluJb SINE Alu 0 312 1 295 212 0 15 chr6 69344555 69344621 -119934933 - MLT1K LTR MaLR 0 588 524 2135 122 3 0 chr6 69344753 69345040 -119934514 + AluSx SINE Alu 5 292 -20 205 282 19 19 chr6 69345213 69345316 -119934238 + (TATATG)n Simple_repeat Simple_repeat 3 105 0 1949 133 39 0 chr6 69345947 69346232 -119933322 + AluSx SINE Alu 3 298 -14 1754 145 33 36 chr6 69346232 69346535 -119933019 + AluJb SINE Alu 1 302 -10 1324 167 13 4 chr6 69346866 69347100 -119932454 + MER119 DNA MER1_type 348 583 0 189 94 0 0 chr6 69347104 69347136 -119932418 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 662 38 0 0 chr6 69347139 69347219 -119932335 - L1PA3 LINE L1 -3 6152 6073 1972 134 7 29 chr6 69347221 69347527 -119932027 - AluSx SINE Alu -13 299 1 1580 176 54 21 chr6 69347549 69347706 -119931848 - AluJo SINE Alu -24 288 117 384 22 0 0 chr6 69347706 69347751 -119931803 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1580 176 54 21 chr6 69347751 69347872 -119931682 - AluJo SINE Alu -195 117 1 2623 168 78 16 chr6 69348416 69349034 -119930520 + MER39 LTR ERV1 13 707 0 260 237 191 40 chr6 69349143 69349295 -119930259 - MER5B DNA MER1_type -3 175 1 2276 115 0 0 chr6 69349314 69349618 -119929936 + AluSx SINE Alu 1 304 -8 391 211 211 16 chr6 69349852 69349975 -119929579 + MER5A DNA MER1_type 37 183 -6 2005 139 13 19 chr6 69350513 69350822 -119928732 + AluJb SINE Alu 1 307 -5 236 150 0 0 chr6 69350927 69350967 -119928587 - MER20 DNA MER1_type 0 219 180 2331 141 19 3 chr6 69350967 69351335 -119928219 + MLT1B LTR MaLR 1 374 -16 1340 178 209 22 chr6 69351335 69351751 -119927803 + LTR54B LTR ERV1 1 494 -4 888 148 3 97 chr6 69351762 69351972 -119927582 - MER20 DNA MER1_type -49 170 1 2238 115 0 0 chr6 69352040 69352344 -119927210 - AluSx SINE Alu -8 304 1 283 301 77 39 chr6 69352671 69352827 -119926727 - MIR3 SINE MIR -41 167 6 2443 89 3 0 chr6 69352875 69353177 -119926377 + AluSq SINE Alu 1 303 -10 202 219 96 14 chr6 69353434 69353507 -119926047 + MIR SINE MIR 58 136 -72 185 275 87 0 chr6 69353831 69353900 -119925654 - MIR3 SINE MIR -45 163 89 242 185 0 99 chr6 69354142 69354223 -119925331 + MIR SINE MIR 124 196 -66 2324 102 3 0 chr6 69354223 69354516 -119925038 + AluSp SINE Alu 1 294 -19 1966 94 16 62 chr6 69354678 69354985 -119924569 - AluSx SINE Alu -19 293 1 670 135 291 0 chr6 69354986 69355134 -119924420 - MSTD LTR MaLR -205 191 1 2436 84 3 0 chr6 69355903 69356201 -119923353 - AluSq SINE Alu -14 299 1 2168 120 7 7 chr6 69356823 69357124 -119922430 + AluSx SINE Alu 1 301 -11 194 274 68 0 chr6 69357602 69357675 -119921879 + MIR SINE MIR 179 256 -6 455 233 78 0 chr6 69357741 69357857 -119921697 + MIR SINE MIR 59 183 -79 2180 122 0 0 chr6 69358049 69358343 -119921211 + AluSx SINE Alu 1 294 -18 420 290 65 14 chr6 69358388 69358526 -119921028 + MIR SINE MIR 36 180 -82 210 244 0 0 chr6 69358550 69358595 -119920959 + (CAT)n Simple_repeat Simple_repeat 3 47 0 1960 49 0 16 chr6 69358611 69358856 -119920698 + L1PA5 LINE L1 5913 6153 -1 1870 126 20 14 chr6 69358878 69359171 -119920383 + AluSx SINE Alu 1 295 -17 192 225 163 12 chr6 69359824 69359904 -119919650 + MIR3 SINE MIR 69 160 -48 569 196 53 15 chr6 69359942 69360102 -119919452 + MER63 DNA MER1_type 38 1062 0 233 286 27 62 chr6 69360110 69360222 -119919332 - MER102a DNA MER1_type 0 330 223 2361 139 11 8 chr6 69360367 69360726 -119918828 - MER47A DNA MER2_type 0 366 7 2193 107 0 10 chr6 69361737 69362035 -119917519 - AluSx SINE Alu -17 295 1 254 260 164 0 chr6 69362558 69362631 -119916923 - L1ME4a LINE L1 -83 6038 5954 1042 147 13 0 chr6 69362736 69362893 -119916661 - FRAM SINE Alu -13 163 5 1368 168 4 29 chr6 69362998 69363236 -119916318 + AluJo SINE Alu 63 294 -18 1878 142 3 32 chr6 69363900 69364211 -119915343 + AluJo SINE Alu 1 302 -10 226 319 43 43 chr6 69364761 69364902 -119914652 + MIR3 SINE MIR 20 160 -48 593 219 84 84 chr6 69364909 69365022 -119914532 - MER113 DNA MER1_type? -7 514 402 1583 158 0 88 chr6 69365022 69365216 -119914338 - AluJo SINE Alu -1 311 158 1840 164 11 0 chr6 69365216 69365502 -119914052 - AluJb SINE Alu -23 289 1 1583 158 0 88 chr6 69365502 69365648 -119913906 - AluJo SINE Alu -154 158 1 593 219 84 84 chr6 69365648 69365821 -119913733 - MER113 DNA MER1_type? -118 403 228 1982 157 0 10 chr6 69365824 69366136 -119913418 + AluJb SINE Alu 2 310 -2 287 234 145 0 chr6 69366177 69366301 -119913253 - MER113 DNA MER1_type? -287 234 93 297 190 30 60 chr6 69366336 69366436 -119913118 - MER113 DNA MER1_type? -424 97 1 234 0 0 0 chr6 69366903 69366929 -119912625 + (CA)n Simple_repeat Simple_repeat 2 27 0 1022 109 7 0 chr6 69367100 69367247 -119912307 + MER41B LTR ERV1 1 148 -487 867 167 0 0 chr6 69367374 69367500 -119912054 + FLAM_C SINE Alu 1 126 -17 1453 183 12 4 chr6 69367628 69367874 -119911680 + AluSx SINE Alu 41 288 -24 24 0 0 0 chr6 69368160 69368184 -119911370 + AT_rich Low_complexity Low_complexity 1 24 0 974 197 16 11 chr6 69369028 69369216 -119910338 - MER5A DNA MER1_type 0 189 1 2666 241 55 38 chr6 69369350 69370537 -119909017 + L1MC/D LINE L1 2651 3872 -2274 2334 133 12 82 chr6 69370547 69370842 -119908712 + L1MA7 LINE L1 5828 6075 -216 1777 182 0 3 chr6 69370842 69371128 -119908426 + AluSx SINE Alu 1 285 -27 2334 133 12 82 chr6 69371128 69371330 -119908224 + L1MA7 LINE L1 6075 6290 -1 4209 205 18 39 chr6 69371363 69371510 -119908044 + L1MC/D LINE L1 4233 4382 -1802 2353 114 0 0 chr6 69371510 69371809 -119907745 + AluSg SINE Alu 3 301 -9 4209 205 18 39 chr6 69371809 69372899 -119906655 + L1MC/D LINE L1 4382 5441 -743 729 177 0 35 chr6 69372901 69373042 -119906512 + FLAM_C SINE Alu 2 137 -6 1442 152 13 0 chr6 69373046 69373276 -119906278 + L1MC/D LINE L1 5432 5664 -669 713 219 15 10 chr6 69373267 69373468 -119906086 + L1M4 LINE L1 4358 4559 -1587 * 1234 120 5 42 chr6 69373636 69373852 -119905702 + MER21A LTR ERV1 1 208 -723 2115 147 7 0 chr6 69373853 69374159 -119905395 - AluSx SINE Alu -4 308 1 3002 162 36 40 chr6 69374227 69374776 -119904778 + MER21A LTR ERV1 380 926 -5 186 71 0 0 chr6 69374806 69374834 -119904720 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1961 128 4 0 chr6 69374845 69375110 -119904444 - AluSx SINE Alu -46 266 1 900 200 155 49 chr6 69375757 69376265 -119903289 + LTR28 LTR ERV1 1 611 -215 274 44 44 0 chr6 69376273 69376318 -119903236 + AluY SINE Alu 254 300 0 404 78 0 16 chr6 69376322 69376414 -119903140 + AluSp/q SINE Alu 244 313 0 1630 92 31 0 chr6 69376426 69376655 -119902899 + Tigger7 DNA MER2_type 2256 2491 0 558 266 6 19 chr6 69376701 69376859 -119902695 + MLT1I LTR MaLR 254 409 0 711 200 0 0 chr6 69377061 69377181 -119902373 - FLAM_A SINE Alu -13 120 1 892 212 64 10 chr6 69377335 69377538 -119902016 - MER20 DNA MER1_type -4 215 2 261 304 35 26 chr6 69377539 69377654 -119901900 + MIR SINE MIR 111 226 -36 1655 142 47 22 chr6 69377867 69378142 -119901412 - AluJo SINE Alu -24 288 7 1877 145 35 0 chr6 69378479 69378769 -119900785 - AluJb SINE Alu -12 300 1 2246 99 13 10 chr6 69378773 69379077 -119900477 - AluY SINE Alu -6 305 1 951 141 0 0 chr6 69379077 69379212 -119900342 - AluSq/x SINE Alu -178 135 1 2250 117 0 0 chr6 69380183 69380491 -119899063 - AluSx SINE Alu -2 310 3 851 191 32 0 chr6 69380616 69380773 -119898781 - AluJ SINE Alu -16 296 135 1862 170 3 7 chr6 69380773 69381079 -119898475 - AluSx SINE Alu -7 305 1 466 159 112 0 chr6 69381080 69381187 -119898367 + MER53 DNA DNA 2 120 -69 191 103 26 0 chr6 69381598 69381637 -119897917 + A-rich Low_complexity Low_complexity 2 41 0 327 130 0 0 chr6 69381638 69381684 -119897870 + AluJb SINE Alu 82 127 -175 23 33 0 0 chr6 69381684 69381714 -119897840 + AT_rich Low_complexity Low_complexity 1 30 0 525 301 29 29 chr6 69381748 69381954 -119897600 - MIR SINE MIR -35 227 22 862 118 0 29 chr6 69381954 69382090 -119897464 - AluJ SINE Alu -170 132 1 739 113 35 0 chr6 69382090 69382205 -119897349 + MER58B DNA MER1_type 223 341 0 2254 108 3 3 chr6 69382413 69382719 -119896835 - AluSx SINE Alu -6 306 1 451 301 127 12 chr6 69382721 69382887 -119896667 + Charlie8 DNA MER1_type 92 276 -2141 441 141 0 14 chr6 69382950 69383021 -119896533 + Charlie8 DNA MER1_type 2335 2404 -13 591 106 0 0 chr6 69383249 69383334 -119896220 + AluSp/q SINE Alu 223 307 -6 214 372 13 0 chr6 69383339 69383417 -119896137 - MIR3 SINE MIR -16 192 114 2028 154 0 3 chr6 69383552 69383851 -119895703 - AluJb SINE Alu -12 300 3 254 263 153 8 chr6 69384027 69384145 -119895409 + L2 LINE L2 2926 3060 -212 2144 138 0 0 chr6 69384251 69384547 -119895007 - AluSx SINE Alu -16 296 1 883 110 0 0 chr6 69384967 69385085 -119894469 + FLAM_C SINE Alu 1 118 -15 360 0 0 0 chr6 69385090 69385130 -119894424 + (CA)n Simple_repeat Simple_repeat 2 41 0 390 329 37 65 chr6 69385752 69385876 -119893678 + L1MEd LINE L1 252 370 -5749 2013 100 0 63 chr6 69385876 69386200 -119893354 + AluSx SINE Alu 1 305 0 390 329 37 65 chr6 69386200 69386290 -119893264 + L1MEd LINE L1 370 461 -5658 347 184 26 13 chr6 69386456 69386532 -119893022 + Charlie8 DNA MER1_type 166 242 -2175 2064 134 0 0 chr6 69389109 69389415 -119890139 - AluSx SINE Alu 0 306 1 2547 83 0 3 chr6 69389419 69389733 -119889821 - AluSq SINE Alu 0 313 1 436 119 0 0 chr6 69389735 69389794 -119889760 - AluJb SINE Alu -169 143 85 247 224 75 0 chr6 69389990 69390057 -119889497 + L2 LINE L2 3238 3309 -4 1716 172 48 0 chr6 69391078 69391368 -119888186 + AluSq SINE Alu 1 304 -9 1472 201 22 35 chr6 69391570 69391884 -119887670 + AluJo SINE Alu 1 310 -2 421 300 119 24 chr6 69391884 69392094 -119887460 + MER102a DNA MER1_type 100 329 -1 228 229 0 0 chr6 69392145 69392193 -119887361 + MIR SINE MIR 108 155 -107 2211 124 0 9 chr6 69392941 69393256 -119886298 + AluSx SINE Alu 1 312 0 2126 126 3 19 chr6 69393557 69393866 -119885688 - AluSq SINE Alu -9 304 1 255 239 0 0 chr6 69394663 69394751 -119884803 + GA-rich Low_complexity Low_complexity 2 89 0 282 258 0 0 chr6 69394783 69394872 -119884682 + (CA)n Simple_repeat Simple_repeat 2 90 0 243 0 0 0 chr6 69394987 69395014 -119884540 + (CA)n Simple_repeat Simple_repeat 2 28 0 487 274 6 6 chr6 69395090 69395269 -119884285 + GA-rich Low_complexity Low_complexity 2 180 0 207 357 7 28 chr6 69395284 69395427 -119884127 + G-rich Low_complexity Low_complexity 4 143 0 * 376 278 5 48 chr6 69395320 69395507 -119884047 + GA-rich Low_complexity Low_complexity 1 179 0 1991 152 0 0 chr6 69395734 69396024 -119883530 + AluJb SINE Alu 3 292 -20 565 208 87 64 chr6 69396231 69396293 -119883261 - MER5B DNA MER1_type -1 177 118 2353 89 6 22 chr6 69396293 69396609 -119882945 + AluSq SINE Alu 1 311 -2 565 208 87 64 chr6 69396609 69396719 -119882835 - MER5B DNA MER1_type -60 118 1 1997 143 0 3 chr6 69397766 69398052 -119881502 - AluJb SINE Alu -13 299 15 692 33 0 11 chr6 69398099 69398191 -119881363 + (TA)n Simple_repeat Simple_repeat 2 92 0 2269 95 0 10 chr6 69398191 69398485 -119881069 - AluSg SINE Alu -19 291 1 2717 195 24 7 chr6 69398497 69399076 -119880478 - L1MB3 LINE L1 -3 6180 5592 1987 129 24 0 chr6 69399411 69399698 -119879856 + AluSx SINE Alu 3 296 -16 26 30 0 0 chr6 69400488 69400521 -119879033 + AT_rich Low_complexity Low_complexity 1 33 0 2293 104 0 10 chr6 69400530 69400829 -119878725 - AluSx SINE Alu -16 296 1 224 254 15 0 chr6 69400921 69400988 -119878566 + (TA)n Simple_repeat Simple_repeat 2 69 0 564 282 114 36 chr6 69401005 69401539 -119878015 - L2 LINE L2 -4 3309 2736 333 0 0 0 chr6 69401568 69401605 -119877949 + (TG)n Simple_repeat Simple_repeat 1 37 0 237 254 0 36 chr6 69402543 69402598 -119876956 - L2 LINE L2 -16 3256 3204 1961 125 0 48 chr6 69402712 69403025 -119876529 - AluSx SINE Alu -14 298 1 424 188 34 40 chr6 69403124 69403300 -119876254 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 22 70 0 0 chr6 69403310 69403353 -119876201 + AT_rich Low_complexity Low_complexity 1 43 0 526 300 45 57 chr6 69403406 69403507 -119876047 - L1ME3A LINE L1 -310 5860 5759 207 0 0 0 chr6 69403507 69403530 -119876024 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2109 113 3 17 chr6 69403532 69403823 -119875731 - AluSx SINE Alu -25 287 1 526 300 45 57 chr6 69403823 69404051 -119875503 - L1ME3A LINE L1 -412 5758 5532 1550 119 81 46 chr6 69404101 69404207 -119875347 + L1PA15 LINE L1 5869 5970 -195 2357 101 3 0 chr6 69404207 69404513 -119875041 + AluSg SINE Alu 1 307 -3 1550 119 81 46 chr6 69404513 69404691 -119874863 + L1PA15 LINE L1 5970 6163 -2 556 228 69 26 chr6 69405001 69405190 -119874364 - L2 LINE L2 -1 3312 3116 206 157 39 20 chr6 69405207 69405258 -119874296 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 1310 100 0 0 chr6 69405344 69405504 -119874050 + AluSx SINE Alu 1 160 -152 846 218 16 10 chr6 69405762 69405955 -119873599 - AluJ SINE Alu -1 311 118 918 144 0 0 chr6 69406005 69406130 -119873424 - AluJ SINE Alu -187 125 1 1794 125 56 49 chr6 69406160 69406464 -119873090 + AluSx SINE Alu 1 306 -6 1040 243 28 8 chr6 69407196 69407443 -119872111 - MIR SINE MIR -10 252 1 1383 198 27 34 chr6 69407622 69407915 -119871639 - AluJb SINE Alu -21 291 1 782 234 81 124 chr6 69407918 69408436 -119871118 + MLT1H LTR MaLR 54 549 0 368 241 74 3 chr6 69408460 69408585 -119870969 - MIR SINE MIR -67 141 52 767 239 7 7 chr6 69409251 69409406 -119870148 + AluJb SINE Alu 144 298 -14 2155 119 0 23 chr6 69409535 69409838 -119869716 + AluSx SINE Alu 2 297 -15 1755 148 0 0 chr6 69410320 69410570 -119868984 + AluJb SINE Alu 1 250 -62 27 0 0 0 chr6 69410583 69410610 -119868944 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr6 69410731 69410756 -119868798 + AT_rich Low_complexity Low_complexity 1 25 0 651 226 24 30 chr6 69410756 69410920 -119868634 - FRAM SINE Alu -3 163 1 255 239 248 9 chr6 69411186 69411295 -119868259 - MIR SINE MIR -38 224 90 197 128 0 26 chr6 69411339 69411378 -119868176 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 301 286 89 9 chr6 69412161 69412273 -119867281 - MIR SINE MIR -108 154 34 541 200 8 25 chr6 69412593 69412713 -119866841 - L2 LINE L2 -8 3305 3188 2116 124 7 0 chr6 69412834 69413124 -119866430 + AluSx SINE Alu 1 292 -20 186 43 0 0 chr6 69413322 69413345 -119866209 + (TGGA)n Simple_repeat Simple_repeat 3 25 0 323 277 36 0 chr6 69413351 69413463 -119866091 + L1MC4 LINE L1 7926 8041 -1 199 246 98 0 chr6 69413627 69413688 -119865866 + MIR SINE MIR 33 99 -109 227 254 0 0 chr6 69413688 69413743 -119865811 + (ATGGTG)n Simple_repeat Simple_repeat 5 59 0 255 213 82 0 chr6 69413795 69413856 -119865698 - MIR SINE MIR -62 146 81 1795 118 0 12 chr6 69413870 69414149 -119865405 + AluSx SINE Alu 38 312 0 1216 137 0 11 chr6 69414202 69414377 -119865177 - FRAM SINE Alu -11 165 1 2100 115 0 0 chr6 69414840 69415119 -119864435 + AluSx SINE Alu 24 302 -10 239 327 159 19 chr6 69415152 69415259 -119864295 - L2 LINE L2 -10 3262 3141 1463 156 0 63 chr6 69416004 69416274 -119863280 + AluJo SINE Alu 1 253 -59 274 143 0 0 chr6 69416284 69416326 -119863228 - 5S rRNA rRNA -79 42 1 305 144 239 12 chr6 69416331 69416414 -119863140 + MLT1J2 LTR MaLR 346 450 0 262 267 13 13 chr6 69416481 69416556 -119862998 + L2 LINE L2 3239 3313 0 2142 118 7 3 chr6 69417001 69417305 -119862249 - AluSx SINE Alu -7 305 1 2194 114 16 3 chr6 69418151 69418459 -119861095 - AluSx SINE Alu 0 312 1 435 326 82 0 chr6 69418467 69418651 -119860903 + MIR SINE MIR 48 246 -16 330 269 54 0 chr6 69418684 69418777 -119860777 - MIR SINE MIR -95 113 16 2114 148 0 0 chr6 69418883 69419186 -119860368 + AluSx SINE Alu 1 303 -9 1931 160 3 13 chr6 69419454 69419767 -119859787 - AluSp SINE Alu -3 310 1 192 152 0 0 chr6 69420172 69420205 -119859349 + (TG)n Simple_repeat Simple_repeat 2 34 0 219 265 82 0 chr6 69420236 69420285 -119859269 + L2 LINE L2 3209 3261 -11 43978 33 21 1 chr6 69420467 69426498 -119853056 - L1PA2 LINE L1 0 6155 1 2144 118 24 0 chr6 69426499 69426788 -119852766 - AluSq SINE Alu -17 296 1 1241 166 124 19 chr6 69426793 69427058 -119852496 - AluSg SINE Alu -17 293 1 565 117 0 0 chr6 69427902 69427979 -119851575 - MADE1 DNA Mariner 0 80 4 344 264 11 11 chr6 69428026 69428113 -119851441 + L2 LINE L2 3186 3272 0 2044 142 0 16 chr6 69428235 69428538 -119851016 - AluJb SINE Alu -14 298 1 191 339 80 27 chr6 69428539 69428651 -119850903 + L2 LINE L2 3153 3270 -2 2307 88 0 0 chr6 69429772 69430086 -119849468 - AluSx SINE Alu 0 314 1 859 248 15 5 chr6 69430213 69430415 -119849139 + MIR SINE MIR 1 204 -58 277 316 0 0 chr6 69431227 69431306 -119848248 + (TG)n Simple_repeat Simple_repeat 1 79 0 300 53 0 0 chr6 69431620 69431658 -119847896 + (TCC)n Simple_repeat Simple_repeat 2 39 0 389 226 219 32 chr6 69431733 69431915 -119847639 + MIR SINE MIR 31 252 -10 1026 247 37 24 chr6 69432486 69432782 -119846772 + L1ME1 LINE L1 5845 6144 -22 384 239 21 7 chr6 69432805 69432925 -119846629 + L1MC4 LINE L1 7509 7678 -181 207 0 0 0 chr6 69432926 69432949 -119846605 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1425 131 0 0 chr6 69432959 69433150 -119846404 - AluSx SINE Alu -121 191 1 597 208 5 81 chr6 69433189 69433386 -119846168 + L1MC4a LINE L1 7627 7808 0 401 296 0 67 chr6 69433427 69433540 -119846014 + MIR SINE MIR 37 135 -127 1884 157 27 0 chr6 69433540 69433833 -119845721 - AluJo SINE Alu -11 301 1 401 296 0 67 chr6 69433833 69433898 -119845656 + MIR SINE MIR 135 203 -59 354 329 61 33 chr6 69433922 69434135 -119845419 + L2 LINE L2 2841 3059 -213 438 146 0 0 chr6 69434172 69434254 -119845300 + (TCCC)n Simple_repeat Simple_repeat 1 82 0 463 258 31 8 chr6 69434307 69434435 -119845119 + L2 LINE L2 3137 3267 -5 693 104 96 40 chr6 69434938 69435063 -119844491 + FLAM_C SINE Alu 2 133 -10 448 282 9 0 chr6 69435088 69435198 -119844356 - L2 LINE L2 -14 3299 3189 413 279 73 0 chr6 69435225 69435361 -119844193 - MIR SINE MIR -70 192 47 2974 55 3 0 chr6 69436450 69436812 -119842742 + L1PA8 LINE L1 5806 6168 -4 21 0 0 0 chr6 69436812 69436833 -119842721 + AT_rich Low_complexity Low_complexity 1 21 0 311 203 58 14 chr6 69436833 69436902 -119842652 + MER58 DNA MER1_type 189 260 -81 248 174 14 43 chr6 69436904 69436973 -119842581 + L1MA9 LINE L1 6216 6282 -30 421 120 9 0 chr6 69436978 69437050 -119842504 + MER58 DNA MER1_type 257 2410 -10 2340 105 0 3 chr6 69437291 69437596 -119841958 + AluSx SINE Alu 1 304 -8 2265 92 7 10 chr6 69438313 69438619 -119840935 - AluSc SINE Alu -2 307 3 1970 141 0 26 chr6 69438623 69438935 -119840619 - AluJo SINE Alu -8 304 1 2188 93 41 3 chr6 69439028 69439318 -119840236 - AluSq SINE Alu -12 301 1 693 205 0 25 chr6 69439451 69439612 -119839942 - MER5B DNA MER1_type 0 178 22 363 277 21 28 chr6 69440081 69440222 -119839332 - MIR SINE MIR -115 147 8 756 200 0 0 chr6 69440651 69440781 -119838773 - FLAM_A SINE Alu -3 130 1 313 98 0 0 chr6 69440802 69440843 -119838711 - U2 snRNA snRNA -147 41 1 723 211 17 28 chr6 69440944 69441124 -119838430 - MER5B DNA MER1_type 0 178 1 1861 157 4 0 chr6 69441253 69441636 -119837918 - AluJb SINE Alu 0 384 1 1629 242 48 42 chr6 69441804 69442308 -119837246 + MLT1H LTR MaLR 1 549 0 21 36 0 0 chr6 69442509 69442537 -119837017 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr6 69442615 69442652 -119836902 + AT_rich Low_complexity Low_complexity 1 37 0 324 0 0 0 chr6 69442659 69442695 -119836859 + (TG)n Simple_repeat Simple_repeat 2 37 0 484 267 119 52 chr6 69442748 69442958 -119836596 + MIR SINE MIR 39 262 0 2188 120 0 0 chr6 69442962 69443253 -119836301 - AluSx SINE Alu -21 291 1 952 216 25 0 chr6 69443380 69443584 -119835970 - MER3 DNA MER1_type 0 209 1 2340 97 3 0 chr6 69443614 69443914 -119835640 - AluSx SINE Alu -11 301 1 1805 175 0 3 chr6 69444160 69444457 -119835097 - AluJb SINE Alu -16 296 1 418 289 68 37 chr6 69444609 69444799 -119834755 - MIR SINE MIR -45 217 22 1873 168 21 10 chr6 69546078 69546465 -119733089 - L1M3 LINE L1 -468 5703 5313 229 183 12 73 chr6 69547710 69547792 -119731762 - L1M3 LINE L1 -1028 5118 5042 2077 153 3 0 chr6 69547811 69548118 -119731436 - AluSx SINE Alu -4 308 1 908 193 35 10 chr6 69548448 69548645 -119730909 - MLT1A2 LTR MaLR 0 374 173 1096 129 32 0 chr6 69549075 69549261 -119730293 - Tigger7 DNA MER2_type -1 2490 2299 849 164 23 0 chr6 69549363 69549491 -119730063 - FLAM_C SINE Alu -10 133 3 1807 191 3 0 chr6 69549506 69549800 -119729754 - AluJb SINE Alu -17 295 1 306 177 0 0 chr6 69549800 69549862 -119729692 + L1MB8 LINE L1 6111 6172 -6 3284 163 94 26 chr6 69549869 69550611 -119728943 - Cheshire DNA MER1_type -1110 1310 518 1884 134 11 0 chr6 69550614 69550883 -119728671 + AluSx SINE Alu 3 274 -38 350 251 111 55 chr6 69551069 69551332 -119728222 - HAL1 LINE L1 -1152 1355 1063 1965 154 7 7 chr6 69551332 69551631 -119727923 + AluSx SINE Alu 1 299 -13 350 251 111 55 chr6 69551631 69551746 -119727808 - HAL1 LINE L1 -1444 1063 956 201 180 16 49 chr6 69552236 69552297 -119727257 + A-rich Low_complexity Low_complexity 1 59 0 674 135 9 0 chr6 69552469 69552580 -119726974 + LTR8A LTR ERV1 1 112 -615 245 358 90 0 chr6 69552844 69552978 -119726576 - MIR SINE MIR -70 192 47 2263 111 0 0 chr6 69553170 69553468 -119726086 + AluSx SINE Alu 3 300 -12 1231 124 0 60 chr6 69553763 69553997 -119725557 + MER50 LTR ERV1 497 716 -18 472 136 0 12 chr6 69553992 69554072 -119725482 + LTR29 LTR ERV1 500 578 -44 745 156 0 0 chr6 69554072 69554194 -119725360 - LTR8 LTR ERV1 0 691 570 2349 103 0 3 chr6 69554296 69554598 -119724956 - AluSq SINE Alu -12 301 1 2097 123 20 0 chr6 69554880 69555182 -119724372 - AluSx SINE Alu -4 308 1 181 338 26 26 chr6 69555636 69555713 -119723841 + L2 LINE L2 1851 1927 -1387 33 25 0 0 chr6 69556036 69556076 -119723478 + AT_rich Low_complexity Low_complexity 1 40 0 234 0 0 0 chr6 69556076 69556102 -119723452 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1524 119 0 0 chr6 69556107 69556309 -119723245 - AluSg/x SINE Alu -37 275 74 2774 282 59 43 chr6 69556471 69556793 -119722761 + L2 LINE L2 1891 2207 -1106 1963 164 3 0 chr6 69556793 69557104 -119722450 + AluSx SINE Alu 1 312 0 2774 282 59 43 chr6 69557104 69558025 -119721529 + L2 LINE L2 2207 3165 -148 2418 77 3 0 chr6 69558180 69558479 -119721075 - AluY SINE Alu -11 300 1 636 259 25 106 chr6 69558480 69558800 -119720754 - L2 LINE L2 0 3313 3020 606 137 108 14 chr6 69559246 69559385 -119720169 + L1 LINE L1 4980 5131 -1015 24 0 0 0 chr6 69560387 69560411 -119719143 + AT_rich Low_complexity Low_complexity 1 24 0 183 196 78 39 chr6 69560853 69560904 -119718650 - L3b LINE CR1 -151 1432 1380 377 218 11 23 chr6 69561347 69561434 -119718120 - MER5A DNA MER1_type -44 145 60 443 325 7 7 chr6 69562014 69562168 -119717386 + MIR SINE MIR 107 260 -2 2080 113 3 0 chr6 69562519 69562828 -119716726 + AluSq SINE Alu 1 310 0 504 252 101 43 chr6 69562838 69563116 -119716438 - L1M4 LINE L1 -1541 4605 4312 1539 188 4 0 chr6 69563993 69564248 -119715306 - AluJb SINE Alu -44 268 13 995 181 80 19 chr6 69564261 69564575 -119714979 - MER69 DNA AcHobo -249 2277 1945 501 261 60 14 chr6 69564576 69564798 -119714756 - MER69 DNA AcHobo -2136 390 123 2152 107 3 17 chr6 69564798 69565097 -119714457 + AluSx SINE Alu 1 295 -17 501 261 60 14 chr6 69565097 69565176 -119714378 - MER69 DNA AcHobo -2403 123 49 2238 121 0 0 chr6 69565476 69565782 -119713772 - AluSx SINE Alu -5 307 2 25 51 0 0 chr6 69565797 69565836 -119713718 + AT_rich Low_complexity Low_complexity 1 39 0 1393 138 14 5 chr6 69567514 69567732 -119711822 - AluJo SINE Alu -9 303 84 183 100 0 0 chr6 69567953 69567983 -119711571 + (A)n Simple_repeat Simple_repeat 1 30 0 3797 194 100 21 chr6 69568091 69569252 -119710302 + Charlie5 DNA MER1_type 1321 2582 -42 2429 58 10 0 chr6 69569252 69569545 -119710009 + AluY SINE Alu 1 296 -15 3797 194 100 21 chr6 69569545 69569591 -119709963 + Charlie5 DNA MER1_type 2582 2623 -1 470 322 237 16 chr6 69569594 69569957 -119709597 + L2 LINE L2 2217 2659 -655 324 143 154 41 chr6 69570275 69570381 -119709173 - MLT1L LTR MaLR -338 173 99 205 339 16 0 chr6 69570456 69570518 -119709036 + L2 LINE L2 2709 2771 -543 264 344 10 10 chr6 69570588 69570684 -119708870 - MIR3 SINE MIR -28 180 85 216 0 0 0 chr6 69570743 69570767 -119708787 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 805 165 0 0 chr6 69570770 69570891 -119708663 - FLAM_C SINE Alu -22 121 1 2331 82 3 3 chr6 69570922 69571216 -119708338 - AluSg SINE Alu -16 294 1 207 368 21 0 chr6 69571218 69571313 -119708241 + MIR SINE MIR 64 160 -102 1705 183 11 0 chr6 69571326 69571630 -119707924 - AluJo SINE Alu 0 307 1 320 218 84 45 chr6 69571634 69571836 -119707718 - MER69 DNA AcHobo -10 2516 2307 210 71 0 0 chr6 69572739 69572767 -119706787 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 730 133 0 0 chr6 69572767 69572872 -119706682 + FRAM SINE Alu 1 97 -79 229 173 19 39 chr6 69572872 69572921 -119706633 - LTR29 LTR ERV1 0 622 575 2133 142 39 92 chr6 69572921 69573486 -119706068 + LTR8 LTR ERV1 1 535 -156 1961 112 10 7 chr6 69574127 69574422 -119705132 + AluSx SINE Alu 1 296 -16 1824 155 0 14 chr6 69574631 69574922 -119704632 - AluJo SINE Alu -25 287 1 203 319 101 25 chr6 69574946 69575065 -119704489 - L2 LINE L2 -8 3264 3137 248 57 29 0 chr6 69575769 69575804 -119703750 + LTR8 LTR ERV1 521 556 -135 2510 135 23 5 chr6 69575996 69576433 -119703121 + L1MD1 LINE L1 5484 5928 -314 614 184 54 7 chr6 69576889 69577036 -119702518 + L1MD1 LINE L1 5924 6077 -165 2132 167 108 30 chr6 69577036 69577508 -119702046 + LTR22 LTR ERVK 1 509 0 5143 106 14 1 chr6 69577508 69578284 -119701270 + HERVK22 LTR ERVK 1 786 -6051 * 10019 72 4 1 chr6 69578277 69579633 -119699921 + HERVK22 LTR ERVK 2314 3674 -3163 457 196 132 25 chr6 69579733 69579929 -119699625 - MSTC LTR MaLR -180 216 1 204 344 167 13 chr6 69583161 69583388 -119696166 + L2 LINE L2 2127 2388 -926 662 176 44 0 chr6 69585649 69585808 -119693746 - MER53 DNA DNA -23 166 1 318 252 137 51 chr6 69585872 69586265 -119693289 - HAL1 LINE L1 -1049 1458 1032 1812 164 50 39 chr6 69586299 69586658 -119692896 + MLT1A1 LTR MaLR 1 363 -2 945 134 102 16 chr6 69587456 69587643 -119691911 - Tigger1 DNA MER2_type 0 2418 2216 770 162 7 44 chr6 69587643 69587779 -119691775 + FLAM_C SINE Alu 1 131 -12 5823 124 17 50 chr6 69587789 69588577 -119690977 - Tigger1 DNA MER2_type -188 2230 1484 2209 114 0 0 chr6 69588577 69588874 -119690680 - AluSq SINE Alu -16 297 1 5823 124 17 50 chr6 69588874 69589141 -119690413 - Tigger1 DNA MER2_type -934 1484 1210 2133 103 33 13 chr6 69589141 69589443 -119690111 - AluSc SINE Alu -1 308 1 1641 167 34 27 chr6 69589930 69590223 -119689331 + AluJb SINE Alu 1 295 -17 699 270 87 35 chr6 69590223 69590534 -119689020 + L1MCc LINE L1 939 1265 -5158 1287 254 94 5 chr6 69590546 69590940 -119688614 + L1MEc LINE L1 35 463 -5933 423 197 17 9 chr6 69591086 69591213 -119688341 + HERVL68 LTR ERVL 1690 3880 -1262 * 455 207 77 77 chr6 69591198 69591406 -119688148 + HERVL68 LTR ERVL 1769 1976 -1061 617 232 73 6 chr6 69591499 69591676 -119687878 + HERVL68 LTR ERVL 2011 2199 -838 15428 150 19 11 chr6 69591822 69594346 -119685208 + L1PB1 LINE L1 18 2566 -4999 2324 99 10 0 chr6 69594346 69594650 -119684904 + AluSg SINE Alu 3 309 -1 15428 150 19 11 chr6 69594650 69594782 -119684772 + L1PB1 LINE L1 2566 2695 -4870 6311 164 7 11 chr6 69594792 69596534 -119683020 + L1PB1 LINE L1 5396 7131 -439 2967 100 31 0 chr6 69596634 69596734 -119682820 + L1PB1 LINE L1 7107 7202 -368 291 54 0 0 chr6 69596734 69596771 -119682783 + (CA)n Simple_repeat Simple_repeat 2 38 0 2967 100 31 0 chr6 69596771 69597119 -119682435 + L1PB1 LINE L1 7202 7569 -1 1667 113 0 10 chr6 69597152 69597444 -119682110 + L1 LINE L1 4556 4844 -1302 825 183 104 0 chr6 69597463 69597665 -119681889 + LTR65 LTR ERV1 326 548 -121 1476 205 11 11 chr6 69597677 69598053 -119681501 - L1 LINE L1 -922 5224 4849 268 244 0 98 chr6 69598060 69598183 -119681371 + LTR65 LTR ERV1 554 664 -5 237 200 20 0 chr6 69598536 69598586 -119680968 + (TA)n Simple_repeat Simple_repeat 1 51 0 4707 200 23 8 chr6 69600465 69602614 -119676940 + L1M3f LINE L1 7 2330 -3998 891 196 145 0 chr6 69602614 69602793 -119676761 + AluJo SINE Alu 87 291 -21 5262 217 18 6 chr6 69602793 69604126 -119675428 + L1M3f LINE L1 2320 3668 -2660 873 218 74 22 chr6 69604237 69604549 -119675005 - Tigger8 DNA MER2_type -186 480 153 5718 78 10 31 chr6 69604919 69605749 -119673805 + THE1A-int LTR MaLR 769 1580 0 2120 116 11 59 chr6 69605749 69606120 -119673434 + THE1A LTR MaLR 1 353 -2 4641 135 37 8 chr6 69606482 69607243 -119672311 + LTR39 LTR ERV1 1 783 0 185 316 70 76 chr6 69607491 69607649 -119671905 - L2 LINE L2 -542 2772 2616 522 196 0 10 chr6 69607735 69607832 -119671722 - FLAM_A SINE Alu -13 129 34 350 46 62 0 chr6 69608224 69608289 -119671265 + (TA)n Simple_repeat Simple_repeat 2 70 0 212 86 29 0 chr6 69608292 69608327 -119671227 + (GA)n Simple_repeat Simple_repeat 1 36 0 27 29 0 0 chr6 69608500 69608534 -119671020 + AT_rich Low_complexity Low_complexity 1 34 0 2477 78 3 0 chr6 69609346 69609652 -119669902 + AluSc SINE Alu 2 308 -1 538 274 30 11 chr6 69610457 69610720 -119668834 + L1ME1 LINE L1 3327 3594 -2552 3121 209 48 10 chr6 69610737 69611753 -119667801 + L1ME1 LINE L1 5003 6052 -114 339 25 0 0 chr6 69611769 69611809 -119667745 + (TC)n Simple_repeat Simple_repeat 2 41 0 207 0 0 0 chr6 69611808 69611831 -119667723 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 1809 161 39 4 chr6 69611844 69612123 -119667431 - AluJo SINE Alu -23 289 1 591 266 50 32 chr6 69612365 69612731 -119666823 + MLT1H LTR MaLR 136 549 0 183 232 0 0 chr6 69613161 69613217 -119666337 + (TGGA)n Simple_repeat Simple_repeat 2 57 0 181 57 57 0 chr6 69613361 69613396 -119666158 + T-rich Low_complexity Low_complexity 6 42 0 2360 71 0 3 chr6 69613441 69613735 -119665819 + AluSx SINE Alu 1 293 -19 276 30 0 0 chr6 69613887 69613920 -119665634 + (CA)n Simple_repeat Simple_repeat 1 33 0 4706 162 36 8 chr6 69614042 69615088 -119664466 + L1MB3 LINE L1 5111 6181 -2 1945 114 71 0 chr6 69615565 69615845 -119663709 + AluSx SINE Alu 1 300 -12 831 228 53 20 chr6 69615874 69616120 -119663434 + MER112 DNA MER1_type 6 259 -1 2160 110 3 0 chr6 69616944 69617245 -119662309 - AluY SINE Alu -9 302 1 1883 152 26 16 chr6 69617421 69617730 -119661824 + AluJo SINE Alu 1 312 0 667 248 0 0 chr6 69618017 69618162 -119661392 - MIR SINE MIR -4 258 114 692 292 31 6 chr6 69618420 69618865 -119660689 + LTR33 LTR ERVL 7 521 0 2216 102 0 0 chr6 69619638 69619954 -119659600 + AluSx SINE Alu 1 316 0 243 0 0 0 chr6 69620336 69620363 -119659191 + (TA)n Simple_repeat Simple_repeat 2 28 0 596 181 0 0 chr6 69620365 69620470 -119659084 - FRAM SINE Alu -17 159 55 1565 191 31 3 chr6 69621244 69621537 -119658017 + AluJo SINE Alu 1 301 -11 455 276 159 7 chr6 69621816 69621961 -119657593 + MIR SINE MIR 13 179 -83 245 236 27 9 chr6 69621985 69622095 -119657459 + (TTA)n Simple_repeat Simple_repeat 1 112 0 * 330 176 33 55 chr6 69622054 69622269 -119657285 + (TTATA)n Simple_repeat Simple_repeat 1 210 0 655 244 97 6 chr6 69622953 69623129 -119656425 + MIR SINE MIR 68 259 -3 1413 183 147 31 chr6 69623750 69624105 -119655449 - MSTD LTR MaLR 0 396 1 530 136 0 0 chr6 69624478 69624559 -119654995 - AluS SINE Alu -231 81 1 374 276 176 20 chr6 69627483 69627685 -119651869 + MIR SINE MIR 38 262 0 614 253 7 0 chr6 69628165 69628311 -119651243 + L2 LINE L2 3167 3313 0 192 0 0 116 chr6 69631009 69631052 -119648502 + (CAAAAA)n Simple_repeat Simple_repeat 6 43 0 342 285 80 22 chr6 69631245 69631382 -119648172 + MIR3 SINE MIR 37 181 -27 241 286 52 0 chr6 69631550 69631627 -119647927 - L2 LINE L2 -227 3086 3006 3577 161 35 23 chr6 69631641 69632301 -119647253 + Tigger7 DNA MER2_type 1 668 -1819 712 156 28 7 chr6 69632303 69632444 -119647110 + Tigger7 DNA MER2_type 2344 2487 0 2054 122 17 3 chr6 69632744 69633038 -119646516 + AluSc SINE Alu 1 298 -11 806 338 138 50 chr6 69633463 69634213 -119645341 + L2 LINE L2 1301 1984 -1330 1179 122 9 45 chr6 69634213 69634435 -119645119 - L1MB8 LINE L1 -6 6172 5959 806 338 138 50 chr6 69634435 69634446 -119645108 + L2 LINE L2 1984 1993 -1321 678 97 0 71 chr6 69634446 69634559 -119644995 - U6 snRNA snRNA -2 105 1 806 338 138 50 chr6 69634559 69635045 -119644509 + L2 LINE L2 1993 2658 -656 278 268 72 22 chr6 69635110 69635248 -119644306 - MLT1L LTR MaLR -6 609 465 250 238 50 12 chr6 69635415 69635495 -119644059 - MLT1J LTR MaLR -331 180 98 198 265 0 0 chr6 69635547 69635596 -119643958 + L2 LINE L2 2718 2766 -548 324 227 15 0 chr6 69635965 69636031 -119643523 + L2 LINE L2 3206 3272 0 2233 124 0 0 chr6 69636155 69636454 -119643100 - AluSx SINE Alu -13 299 1 1763 134 0 19 chr6 69636655 69636916 -119642638 + AluSq SINE Alu 58 313 0 21 0 0 0 chr6 69636938 69636959 -119642595 + AT_rich Low_complexity Low_complexity 1 21 0 1908 163 3 25 chr6 69637311 69637630 -119641924 + AluJo SINE Alu 1 312 0 2826 242 80 41 chr6 69637652 69638551 -119641003 + L1MEc LINE L1 1868 2730 -3485 1709 194 7 0 chr6 69638551 69638835 -119640719 + AluJb SINE Alu 1 286 -26 2826 242 80 41 chr6 69638835 69639444 -119640110 + L1MEc LINE L1 2730 3413 -2802 1786 164 6 31 chr6 69639444 69639762 -119639792 + AluJb SINE Alu 3 312 0 2826 242 80 41 chr6 69639762 69639842 -119639712 + L1MEc LINE L1 3413 3488 -2727 312 235 136 0 chr6 69639880 69639961 -119639593 - Charlie1 DNA MER1_type -2669 92 1 191 234 13 0 chr6 69640019 69640096 -119639458 + (TA)n Simple_repeat Simple_repeat 2 79 0 10907 98 27 17 chr6 69640197 69641990 -119637564 + HERVK22 LTR ERVK 3188 6837 0 2420 173 82 11 chr6 69641991 69642465 -119637089 + LTR22 LTR ERVK 2 509 0 424 170 117 11 chr6 69642465 69642559 -119636995 + L1MD1 LINE L1 6072 6175 -67 6690 217 40 74 chr6 69642577 69643574 -119635980 - L1MB8 LINE L1 -12 6977 5947 2067 145 3 3 chr6 69643574 69643884 -119635670 - AluJb SINE Alu 0 312 3 6690 217 40 74 chr6 69643884 69644071 -119635483 - L1MB8 LINE L1 -1042 5947 5755 2175 94 0 0 chr6 69644071 69644348 -119635206 - AluSc SINE Alu -5 304 28 6690 217 40 74 chr6 69644348 69644998 -119634556 - L1MB8 LINE L1 -1234 5755 5084 2165 121 0 0 chr6 69644998 69645295 -119634259 - AluSx SINE Alu -15 297 1 6690 217 40 74 chr6 69645295 69645468 -119634086 - L1MB8 LINE L1 -1905 5084 4907 2271 104 3 13 chr6 69645468 69645777 -119633777 - AluSq SINE Alu -7 306 1 6690 217 40 74 chr6 69645777 69647040 -119632514 - L1MB8 LINE L1 -2082 4907 3602 1910 147 3 20 chr6 69647040 69647339 -119632215 - AluJb SINE Alu -16 296 3 2188 71 3 25 chr6 69647349 69647631 -119631923 - AluSp SINE Alu -13 300 25 6690 217 40 74 chr6 69647631 69647676 -119631878 - L1MB8 LINE L1 -3396 3593 3548 560 167 40 16 chr6 69647676 69647802 -119631752 - L1MA8 LINE L1 -6 6285 6157 6690 217 40 74 chr6 69647802 69648396 -119631158 - L1MB8 LINE L1 -3441 3548 3200 1417 221 24 10 chr6 69648398 69648688 -119630866 + AluJb SINE Alu 3 296 -6 1023 40 0 0 chr6 69648690 69648850 -119630704 + L1PA3 LINE L1 6008 6167 0 667 181 13 13 chr6 69648856 69649039 -119630515 - L1MB8 LINE L1 -3761 3196 3014 1976 243 64 36 chr6 69649069 69651181 -119628373 - L1MB8 LINE L1 -4753 2206 11 1172 107 0 0 chr6 69651185 69651344 -119628210 - AluSg/x SINE Alu -17 295 137 240 150 7 0 chr6 69651353 69651417 -119628137 + L1MD1 LINE L1 6179 6359 0 27 73 0 0 chr6 69651639 69651694 -119627860 + AT_rich Low_complexity Low_complexity 1 55 0 2008 238 87 35 chr6 69651694 69652303 -119627251 + L1MC4 LINE L1 7093 7756 -286 2288 75 7 3 chr6 69652303 69652596 -119626958 + AluSg SINE Alu 1 294 -16 2008 238 87 35 chr6 69652596 69652790 -119626764 + L1MC4 LINE L1 7756 7938 -104 1880 89 0 102 chr6 69653651 69653975 -119625579 - AluY SINE Alu -20 291 1 2326 90 10 0 chr6 69654911 69655211 -119624343 - AluY SINE Alu -8 303 1 1731 191 24 0 chr6 69655216 69655514 -119624040 - AluJo SINE Alu -7 305 1 2148 122 143 11 chr6 69655624 69656002 -119623552 + MSTA LTR MaLR 1 428 0 273 167 67 44 chr6 69656119 69656209 -119623345 - L1ME LINE L1 -338 5783 5692 1722 154 0 21 chr6 69656637 69656916 -119622638 - AluJb SINE Alu -11 301 29 377 218 11 23 chr6 69658750 69658837 -119620717 + MER5A DNA MER1_type 60 145 -44 378 239 77 17 chr6 69660204 69660321 -119619233 - L1ME3A LINE L1 -9 6161 6038 1024 156 15 35 chr6 69661585 69661784 -119617770 - AluJo SINE Alu 0 312 118 23 78 0 0 chr6 69661904 69661955 -119617599 + AT_rich Low_complexity Low_complexity 1 51 0 389 217 63 56 chr6 69662180 69662323 -119617231 + MIR SINE MIR 119 262 0 1948 145 10 13 chr6 69662617 69662920 -119616634 - AluJo SINE Alu -7 305 4 1848 163 0 3 chr6 69663096 69663411 -119616143 - AluSx SINE Alu 0 312 4 258 136 0 0 chr6 69663441 69663485 -119616069 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 583 140 32 11 chr6 69663733 69663826 -119615728 - FLAM_A SINE Alu -36 106 12 1716 186 7 14 chr6 69664017 69664312 -119615242 - AluJo SINE Alu -19 293 1 657 194 143 74 chr6 69664595 69664644 -119614910 - MER63C DNA MER1_type -130 930 886 2275 100 0 7 chr6 69664644 69664945 -119614609 + AluSx SINE Alu 1 299 -13 657 194 143 74 chr6 69664945 69665153 -119614401 - MER63C DNA MER1_type -174 886 655 1214 139 0 0 chr6 69665331 69665497 -119614057 + AluSx SINE Alu 7 172 -140 1214 118 0 0 chr6 69665496 69665657 -119613897 + AluSg/x SINE Alu 132 292 -20 556 184 6 0 chr6 69665685 69665802 -119613752 - MER63C DNA MER1_type -551 379 259 407 149 0 15 chr6 69665802 69665869 -119613685 - MER2 DNA MER2_type 0 345 280 22 35 0 0 chr6 69665869 69665898 -119613656 + AT_rich Low_complexity Low_complexity 1 29 0 660 180 62 0 chr6 69665907 69666068 -119613486 - MER2 DNA MER2_type -135 210 40 28 71 0 0 chr6 69667470 69667526 -119612028 + AT_rich Low_complexity Low_complexity 1 56 0 902 149 260 21 chr6 69668301 69668536 -119611018 - MER63D DNA MER1_type -619 442 152 2531 188 141 10 chr6 69668987 69669782 -119609772 + Charlie5 DNA MER1_type 1 897 -1715 1148 145 0 0 chr6 69669786 69669952 -119609602 - AluSg/x SINE Alu -13 299 134 2099 116 10 10 chr6 69669952 69670245 -119609309 - AluSx SINE Alu -18 294 2 969 213 59 59 chr6 69670245 69670280 -119609274 + Charlie5 DNA MER1_type 889 923 -1701 1643 163 37 34 chr6 69670280 69670575 -119608979 - AluJb SINE Alu -16 296 1 969 213 59 59 chr6 69670575 69670685 -119608869 + Charlie5 DNA MER1_type 923 1032 -1592 2249 108 0 0 chr6 69670685 69670980 -119608574 + AluY SINE Alu 2 296 -15 969 213 59 59 chr6 69670980 69671208 -119608346 + Charlie5 DNA MER1_type 1031 1263 -1361 752 119 8 24 chr6 69671208 69671334 -119608220 + AluYb8 SINE Alu 1 124 -194 511 124 101 11 chr6 69671459 69671548 -119608006 - AluS SINE Alu -216 97 1 671 221 116 6 chr6 69673082 69673254 -119606300 + MIR SINE MIR 11 201 -61 23 0 0 0 chr6 69673694 69673717 -119605837 + AT_rich Low_complexity Low_complexity 1 23 0 716 181 12 12 chr6 69676530 69676701 -119602853 + L1 LINE L1 3599 3769 -2377 502 144 93 0 chr6 69676701 69676798 -119602756 - MER20 DNA MER1_type -80 139 34 198 0 0 0 chr6 69677827 69677849 -119601705 + (A)n Simple_repeat Simple_repeat 1 22 0 2231 105 0 3 chr6 69677962 69678268 -119601286 + AluSx SINE Alu 2 306 -6 524 190 0 10 chr6 69678305 69678405 -119601149 + FLAM_C SINE Alu 35 133 -10 1530 167 45 28 chr6 69678583 69678871 -119600683 - AluJb SINE Alu -19 293 1 411 186 107 79 chr6 69679814 69679954 -119599600 - MER103 DNA DNA -2 164 21 356 198 0 0 chr6 69680615 69680691 -119598863 - AluS SINE Alu -239 61 1 48 18 0 0 chr6 69681588 69681643 -119597911 + AT_rich Low_complexity Low_complexity 1 55 0 2244 215 78 33 chr6 69681790 69682389 -119597165 + MLT1E2 LTR MaLR 1 626 0 2287 70 10 45 chr6 69682851 69683163 -119596391 - AluY SINE Alu -10 301 1 21 0 0 0 chr6 69683267 69683288 -119596266 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr6 69683706 69683756 -119595798 + AT_rich Low_complexity Low_complexity 1 50 0 251 322 33 22 chr6 69684239 69684329 -119595225 - MIR3 SINE MIR -19 189 99 216 200 22 0 chr6 69684461 69684506 -119595048 - L2 LINE L2 -5 3267 3222 808 293 4 29 chr6 69684537 69684783 -119594771 - MIR SINE MIR 0 262 23 332 353 0 26 chr6 69684797 69684913 -119594641 - L2 LINE L2 -36 3236 3124 907 234 125 99 chr6 69684936 69685479 -119594075 + MER77 LTR ERV1 43 599 -6 364 295 21 53 chr6 69685902 69686092 -119593462 - L1ME4a LINE L1 -129 5992 5809 1036 225 73 20 chr6 69686159 69686501 -119593053 - L1ME2 LINE L1 -62 6102 5743 2155 126 3 0 chr6 69686537 69686838 -119592716 - AluSx SINE Alu -10 302 1 191 128 51 0 chr6 69686893 69686932 -119592622 + T-rich Low_complexity Low_complexity 5 45 0 1818 162 50 0 chr6 69686936 69687233 -119592321 - AluJb SINE Alu 0 312 1 525 309 74 42 chr6 69687233 69687564 -119591990 - L1ME2 LINE L1 -390 5727 5388 193 207 110 37 chr6 69687639 69687721 -119591833 + MIR SINE MIR 175 262 0 2765 199 87 73 chr6 69688044 69689229 -119590325 - L1MC5 LINE L1 -126 7835 6635 23 33 0 0 chr6 69689245 69689275 -119590279 + AT_rich Low_complexity Low_complexity 1 30 0 3371 119 21 8 chr6 69689275 69690092 -119589462 - L1MA5A LINE L1 -23 6274 5319 241 210 0 0 chr6 69690092 69690154 -119589400 - FAM SINE Alu 0 179 118 238 220 0 0 chr6 69690154 69690204 -119589350 + PABL_B LTR ERV1 1 50 -617 707 226 49 47 chr6 69690459 69690854 -119588700 + PABL_B LTR ERV1 263 667 0 1058 169 9 66 chr6 69690921 69691134 -119588420 - AluJo SINE Alu -67 245 45 2810 157 30 21 chr6 69691150 69691375 -119588179 - L1 LINE L1 -1006 5140 4918 1823 167 7 7 chr6 69691375 69691674 -119587880 - AluJo SINE Alu -13 299 1 2810 157 30 21 chr6 69691674 69692022 -119587532 - L1 LINE L1 -1228 4918 4562 774 231 18 6 chr6 69692234 69692403 -119587151 - MER45A DNA AcHobo -7 171 1 776 249 122 30 chr6 69692411 69692648 -119586906 - MIR SINE MIR -2 260 2 677 256 109 59 chr6 69692664 69692985 -119586569 - L1ME2 LINE L1 -1295 4851 4499 2163 102 7 13 chr6 69692985 69693288 -119586266 - AluSx SINE Alu -11 301 1 677 256 109 59 chr6 69693288 69693426 -119586128 - L1ME2 LINE L1 -1647 4499 4369 377 284 14 47 chr6 69693543 69693758 -119585796 - HAL1 LINE L1 -54 2453 2246 594 136 178 17 chr6 69693758 69693876 -119585678 - AluJo SINE Alu -119 193 57 7980 247 30 18 chr6 69694439 69695190 -119584364 - L1PA15-16 LINE L1 -1882 4967 4226 297 51 0 0 chr6 69695190 69695229 -119584325 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1715 185 3 3 chr6 69695231 69695517 -119584037 - AluJo SINE Alu -25 287 2 7980 247 30 18 chr6 69695517 69697275 -119582279 - L1PA15-16 LINE L1 -2623 4226 2420 1804 176 3 26 chr6 69697275 69697581 -119581973 + AluJb SINE Alu 2 300 -12 7980 247 30 18 chr6 69697581 69697679 -119581875 - L1PA15-16 LINE L1 -4429 2420 2325 686 139 53 20 chr6 69697684 69697835 -119581719 - L1PA15-16 LINE L1 -5146 1703 1548 4722 87 68 33 chr6 69698145 69698869 -119580685 - SVA Other Other 0 1386 638 4544 168 7 36 chr6 69698874 69699751 -119579803 - L1PA15-16 LINE L1 -5290 1559 709 1632 181 116 24 chr6 69699881 69700302 -119579252 + MLT1C LTR MaLR 8 467 0 1365 263 129 18 chr6 69700302 69700868 -119578686 - L2 LINE L2 -1405 1909 1281 444 291 96 57 chr6 69701016 69701246 -119578308 - MIR SINE MIR 0 262 24 2590 52 3 0 chr6 69701247 69701554 -119578000 - AluY SINE Alu -3 308 1 1944 163 0 7 chr6 69701732 69702039 -119577515 + AluJo SINE Alu 1 305 -7 205 305 11 74 chr6 69702847 69702942 -119576612 + L2 LINE L2 3184 3272 0 457 238 146 0 chr6 69703900 69704051 -119575503 + L1ME3A LINE L1 5993 6165 -5 1659 141 50 20 chr6 69704072 69704370 -119575184 + AluJb SINE Alu 1 307 -5 352 254 8 34 chr6 69704477 69704595 -119574959 + L1ME3 LINE L1 4428 4542 -1604 296 342 27 9 chr6 69704790 69704901 -119574653 - MIR SINE MIR -115 147 35 1062 278 101 45 chr6 69704910 69705186 -119574368 + L1ME3 LINE L1 4537 4796 -1366 1887 167 17 0 chr6 69705186 69705486 -119574068 + AluJb SINE Alu 1 305 -7 1062 278 101 45 chr6 69705486 69706543 -119573011 + L1ME3 LINE L1 4796 5952 -210 229 143 60 24 chr6 69706544 69706628 -119572926 + (TA)n Simple_repeat Simple_repeat 1 87 0 2062 137 0 7 chr6 69706682 69706988 -119572566 - AluSx SINE Alu -8 304 1 2314 94 0 7 chr6 69707419 69707726 -119571828 + AluSc SINE Alu 1 305 -4 2268 111 0 13 chr6 69708454 69708769 -119570785 + AluSx SINE Alu 1 311 -1 31 26 0 0 chr6 69709252 69709290 -119570264 + AT_rich Low_complexity Low_complexity 1 38 0 956 164 7 0 chr6 69709290 69709442 -119570112 - FRAM SINE Alu -23 153 1 274 235 12 12 chr6 69709456 69709537 -119570017 + (TA)n Simple_repeat Simple_repeat 1 81 0 666 280 52 55 chr6 69709987 69710316 -119569238 + MLT1J LTR MaLR 5 332 -179 359 266 49 108 chr6 69711199 69711465 -119568089 + L1MC/D LINE L1 5418 5655 -2153 1835 182 3 10 chr6 69711465 69711778 -119567776 - AluJo SINE Alu -1 311 1 359 266 49 108 chr6 69711778 69711899 -119567655 + L1MC/D LINE L1 5655 5782 -2026 1624 241 14 43 chr6 69711975 69712535 -119567019 + L1MA9 LINE L1 5731 6274 -38 422 278 57 35 chr6 69712614 69712844 -119566710 + L1MC4a LINE L1 5674 5908 -1900 250 277 113 13 chr6 69712866 69713025 -119566529 + L1MC4a LINE L1 5940 6114 -1694 25 51 0 0 chr6 69713051 69713090 -119566464 + AT_rich Low_complexity Low_complexity 1 39 0 861 144 0 0 chr6 69713499 69713617 -119565937 + FLAM_C SINE Alu 6 123 -20 986 140 7 13 chr6 69714601 69714751 -119564803 + AluJb SINE Alu 1 149 -163 28 0 0 0 chr6 69714853 69714881 -119564673 + AT_rich Low_complexity Low_complexity 1 28 0 1873 164 3 19 chr6 69715226 69715544 -119564010 + AluSq SINE Alu 1 313 0 1746 163 95 8 chr6 69715889 69716269 -119563285 - Cheshire DNA MER1_type -3 2417 2005 3124 178 29 37 chr6 69716400 69717149 -119562405 - Cheshire DNA MER1_type -393 2027 1285 344 200 0 0 chr6 69717151 69717221 -119562333 + L1MB8 LINE L1 4632 4701 -1445 * 481 203 61 18 chr6 69717219 69717382 -119562172 + L1MB8 LINE L1 5936 6105 -73 243 0 0 0 chr6 69717403 69717430 -119562124 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 906 136 0 0 chr6 69717430 69717562 -119561992 - FRAM SINE Alu -32 144 13 477 191 21 50 chr6 69717683 69717753 -119561801 - Cheshire DNA MER1_type -1897 523 457 2451 74 0 0 chr6 69717753 69718050 -119561504 + AluY SINE Alu 1 297 -14 477 191 21 50 chr6 69718050 69718120 -119561434 - Cheshire DNA MER1_type -1963 457 387 1925 116 22 0 chr6 69719097 69719407 -119560147 - AluSq SINE Alu 0 318 3 180 0 0 0 chr6 69719523 69719543 -119560011 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1118 271 33 12 chr6 69719549 69719885 -119559669 - Cheshire DNA MER1_type -2040 380 38 393 228 0 0 chr6 69720084 69720163 -119559391 + Tigger7 DNA MER2_type 4 82 -2405 2756 60 3 0 chr6 69770164 69770516 -119509038 - L1P LINE L1 -5772 374 22 315 273 34 0 chr6 69770628 69770716 -119508838 - MIR SINE MIR -30 232 142 882 165 63 0 chr6 69770728 69770886 -119508668 - AluJo SINE Alu -30 282 115 3285 164 40 27 chr6 69770887 69771592 -119507962 + L1MA8 LINE L1 5568 6281 -10 883 259 104 27 chr6 69771719 69772170 -119507384 + HAL1 LINE L1 1186 1671 -836 8439 197 60 55 chr6 69772175 69774179 -119505375 + L1MB5 LINE L1 2035 4027 -2383 2317 88 0 23 chr6 69774179 69774484 -119505070 - AluSg SINE Alu -12 298 1 8439 197 60 55 chr6 69774484 69774872 -119504682 + L1MB5 LINE L1 4027 4411 -1999 729 97 303 0 chr6 69774872 69775017 -119504537 + AluY SINE Alu 122 310 -1 8439 197 60 55 chr6 69775017 69775580 -119503974 + L1MB5 LINE L1 4411 4969 -1441 2089 118 70 17 chr6 69775580 69775936 -119503618 - THE1C LTR MaLR 0 375 1 8439 197 60 55 chr6 69775936 69777190 -119502364 + L1MB5 LINE L1 4969 6402 -8 1848 154 23 52 chr6 69777239 69777584 -119501970 + MER1B DNA MER1_type 3 337 0 2157 103 10 10 chr6 69778183 69778483 -119501071 + AluSx SINE Alu 1 300 -12 2016 154 0 0 chr6 69778640 69778939 -119500615 - AluSx SINE Alu -13 299 1 1729 191 23 3 chr6 69779785 69780089 -119499465 + AluJb SINE Alu 1 310 -2 1507 202 28 3 chr6 69781286 69781573 -119497981 - AluJo SINE Alu -18 294 1 1655 62 45 0 chr6 69781586 69781810 -119497744 - L1PA8 LINE L1 0 6172 5939 947 193 5 67 chr6 69782200 69782423 -119497131 - MIR SINE MIR 0 262 54 2745 73 11 11 chr6 69782655 69783025 -119496529 - THE1C LTR MaLR -3 372 3 885 261 23 43 chr6 69783445 69783702 -119495852 + MIR SINE MIR 11 262 0 716 318 171 8 chr6 69783703 69784364 -119495190 + L2 LINE L2 1955 2723 -591 593 184 9 0 chr6 69784532 69784641 -119494913 + MER20 DNA MER1_type 110 219 0 194 387 62 0 chr6 69785567 69785792 -119493762 + L2 LINE L2 2364 2602 -712 232 253 147 0 chr6 69785800 69785895 -119493659 + L2 LINE L2 1913 2021 -1293 449 309 80 92 chr6 69786182 69786596 -119492958 + L2 LINE L2 2864 3272 0 6084 36 2 0 chr6 69787486 69788867 -119490687 - L1PA5 LINE L1 -127 6027 4644 6886 43 0 0 chr6 69788869 69789777 -119489777 + L1P LINE L1 2353 3260 -2886 261 337 105 72 chr6 69789873 69789920 -119489634 + L2 LINE L2 2812 2856 -416 2310 125 0 0 chr6 69789920 69790231 -119489323 - AluSx SINE Alu 0 312 2 261 337 105 72 chr6 69790231 69790393 -119489161 + L2 LINE L2 2856 3035 -237 1792 153 0 36 chr6 69790393 69790694 -119488860 + AluJb SINE Alu 1 290 -22 261 337 105 72 chr6 69790694 69790759 -119488795 + L2 LINE L2 3035 3096 -176 372 333 41 7 chr6 69790817 69790964 -119488590 - L2 LINE L2 -5 3267 3116 2353 72 7 10 chr6 69791032 69791336 -119488218 - AluSp SINE Alu -10 303 1 702 249 136 10 chr6 69791428 69791729 -119487825 + HAL1 LINE L1 1689 2027 -480 1936 163 0 13 chr6 69791742 69791878 -119487676 + AluJb SINE Alu 1 137 -175 2012 110 3 13 chr6 69791878 69792179 -119487375 + AluY SINE Alu 1 298 -13 1936 163 0 13 chr6 69792179 69792343 -119487211 + AluJb SINE Alu 137 297 -15 441 230 185 6 chr6 69792913 69793091 -119486463 + LTR16C LTR ERVL 224 433 -58 24 0 0 0 chr6 69793837 69793861 -119485693 + AT_rich Low_complexity Low_complexity 1 24 0 2386 105 0 0 chr6 69793904 69794209 -119485345 + AluSg SINE Alu 1 305 -5 386 299 0 35 chr6 69794569 69794713 -119484841 + MER34 LTR ERV1 5 143 -399 1985 106 11 7 chr6 69794721 69794994 -119484560 - AluSx SINE Alu -2 310 37 888 212 50 71 chr6 69794999 69795406 -119484148 + MER39 LTR ERV1 280 542 0 25 65 0 0 chr6 69795678 69795724 -119483830 + AT_rich Low_complexity Low_complexity 1 46 0 2390 92 3 0 chr6 69796645 69796950 -119482604 - AluSx SINE Alu -6 306 1 227 213 0 0 chr6 69798576 69798623 -119480931 + (TA)n Simple_repeat Simple_repeat 2 48 0 232 283 0 22 chr6 69798624 69798716 -119480838 - L1MC4 LINE L1 -1339 6703 6614 265 202 0 22 chr6 69798718 69798807 -119480747 + (TA)n Simple_repeat Simple_repeat 1 87 0 314 259 35 12 chr6 69798822 69798907 -119480647 + L1MC4 LINE L1 6614 6700 -1342 1221 309 179 26 chr6 69799473 69800462 -119479092 - L2 LINE L2 -1858 1456 317 246 143 71 0 chr6 69801458 69801500 -119478054 - Tigger5 DNA MER2_type 0 2323 2279 335 167 30 0 chr6 69801503 69801569 -119477985 - Tigger5 DNA MER2_type -22 2301 2234 358 157 14 14 chr6 69801622 69801692 -119477862 - Tigger5 DNA MER2_type -3 2320 2251 241 220 0 0 chr6 69801661 69801711 -119477843 - Tigger5 DNA MER2_type -2268 55 6 * 1886 134 70 0 chr6 69802008 69802292 -119477262 + AluSx SINE Alu 2 305 -7 3476 183 22 12 chr6 69802355 69803001 -119476553 + MER82 DNA MER2_type 2 653 0 182 152 0 43 chr6 69803657 69803703 -119475851 + A-rich Low_complexity Low_complexity 2 45 0 391 227 227 23 chr6 69804383 69804511 -119475043 + MIR SINE MIR 68 221 -41 1682 144 18 0 chr6 69804533 69804811 -119474743 + MER46B DNA MER2_type 4 161 -75 1725 165 0 31 chr6 69804811 69805133 -119474421 + AluJo SINE Alu 1 313 0 284 308 68 48 chr6 69805612 69805758 -119473796 - MER5A DNA MER1_type -2 187 39 431 239 54 7 chr6 69805917 69806119 -119473435 + LTR16B LTR ERVL 209 451 -13 418 254 0 141 chr6 69806184 69806242 -119473312 - MER5B DNA MER1_type -1 177 112 1870 146 13 19 chr6 69806242 69806550 -119473004 + AluJo SINE Alu 1 306 -6 418 254 0 141 chr6 69806550 69806606 -119472948 - MER5B DNA MER1_type -66 112 84 2068 98 19 81 chr6 69806606 69806965 -119472589 - MER1B DNA MER1_type 0 337 1 418 254 0 141 chr6 69806965 69806991 -119472563 - MER5B DNA MER1_type -94 84 56 7123 186 138 41 chr6 69807228 69807959 -119471595 + L1MDa LINE L1 16 675 -5865 1853 143 42 3 chr6 69807959 69808246 -119471308 - AluJb SINE Alu -14 298 1 7123 186 138 41 chr6 69808246 69809610 -119469944 + L1MDa LINE L1 675 2336 -4204 1939 148 57 9 chr6 69809610 69809941 -119469613 + MER7A DNA MER2_type 1 345 -1 7123 186 138 41 chr6 69809941 69810037 -119469517 + L1MDa LINE L1 2336 2421 -4119 353 176 183 8 chr6 69810020 69810151 -119469403 + L1MDa LINE L1 2994 3147 -3393 * 2660 134 35 35 chr6 69810161 69810689 -119468865 - MER41B LTR ERV1 -12 597 114 2944 239 60 27 chr6 69810707 69810948 -119468606 + L1MDa LINE L1 3164 3396 -3144 1954 139 13 0 chr6 69810948 69811250 -119468304 - AluSx SINE Alu -6 306 1 2944 239 60 27 chr6 69811250 69812211 -119467343 + L1MDa LINE L1 3396 4406 -2134 2018 125 3 10 chr6 69812211 69812506 -119467048 + AluSx SINE Alu 1 293 -19 544 122 0 0 chr6 69812606 69812680 -119466874 - AluS SINE Alu -235 74 1 273 325 42 17 chr6 69814134 69814254 -119465300 + L2 LINE L2 3149 3271 -1 1931 114 0 62 chr6 69815664 69815972 -119463582 + AluSx SINE Alu 1 289 -23 189 0 0 0 chr6 69815973 69815994 -119463560 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr6 69816229 69816252 -119463302 + AT_rich Low_complexity Low_complexity 1 23 0 1852 137 3 65 chr6 69817755 69818076 -119461478 - AluSx SINE Alu -8 304 4 1852 204 19 33 chr6 69818078 69818559 -119460995 - L1MC4a LINE L1 -722 7086 6613 356 122 47 28 chr6 69818583 69818690 -119460864 + (CCA)n Simple_repeat Simple_repeat 2 110 0 1394 149 23 179 chr6 69818747 69819346 -119460208 - L1MC4a LINE L1 -1254 6554 6049 288 294 34 54 chr6 69819353 69819557 -119459997 - L2 LINE L2 -855 2459 2260 23 54 0 0 chr6 69819739 69819776 -119459778 + AT_rich Low_complexity Low_complexity 1 37 0 255 103 0 0 chr6 69820114 69820153 -119459401 + (TC)n Simple_repeat Simple_repeat 2 40 0 201 74 0 0 chr6 69821504 69821531 -119458023 + (TG)n Simple_repeat Simple_repeat 1 27 0 518 87 0 0 chr6 69821802 69821871 -119457683 + Alu SINE Alu 1 69 -240 1119 138 6 0 chr6 69822267 69822434 -119457120 + AluSp SINE Alu 1 168 -145 28533 35 15 1 chr6 69822534 69828130 -119451424 + L1PA3 LINE L1 430 6155 0 27 0 0 0 chr6 69828240 69828267 -119451287 + AT_rich Low_complexity Low_complexity 1 27 0 1179 170 280 24 chr6 69831007 69831378 -119448176 - MER31B LTR ERV1 0 466 1 1800 172 10 3 chr6 69831799 69832090 -119447464 + AluJb SINE Alu 1 293 -19 915 70 0 0 chr6 69832193 69832308 -119447246 - L1MB3 LINE L1 -15 6168 6054 794 263 50 36 chr6 69832308 69832666 -119446888 - L1M4 LINE L1 -1029 5117 4755 683 321 49 29 chr6 69832684 69833033 -119446521 + L2 LINE L2 2949 3304 -9 2280 102 0 9 chr6 69833813 69834128 -119445426 + AluSx SINE Alu 1 312 0 297 291 146 9 chr6 69834132 69834242 -119445312 - L2 LINE L2 -4 3268 3144 244 263 40 30 chr6 69835375 69835474 -119444080 - MIR SINE MIR -70 192 93 447 204 72 145 chr6 69836024 69836131 -119443423 - MIR SINE MIR -22 240 158 1876 61 56 0 chr6 69836131 69836362 -119443192 - AluSg SINE Alu -30 280 37 447 204 72 145 chr6 69836362 69836489 -119443065 - MIR SINE MIR -104 158 23 21 0 0 0 chr6 69836698 69836719 -119442835 + AT_rich Low_complexity Low_complexity 1 21 0 702 97 89 0 chr6 69837041 69837165 -119442389 + Tigger3(Golem) DNA MER2_type 199 333 -2696 * 3566 101 83 15 chr6 69837164 69837454 -119442100 + Tigger3(Golem) DNA MER2_type 2277 2546 -482 2232 105 3 0 chr6 69837454 69837748 -119441806 + AluSx SINE Alu 1 295 -17 3566 101 83 15 chr6 69837748 69838049 -119441505 + Tigger3(Golem) DNA MER2_type 2546 2908 -120 2629 185 94 56 chr6 69838049 69838317 -119441237 + L1M4c LINE L1 912 1169 -5394 225 0 0 0 chr6 69838317 69838342 -119441212 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 2629 185 94 56 chr6 69838342 69838887 -119440667 + L1M4c LINE L1 1169 1951 -4612 212 245 133 20 chr6 69839063 69839161 -119440393 + MIR SINE MIR 79 187 -75 695 233 49 12 chr6 69839429 69839592 -119439962 - MIR SINE MIR -90 172 4 2918 6 0 0 chr6 69840031 69840342 -119439212 + AluY SINE Alu 1 311 0 1158 171 0 0 chr6 69840343 69840518 -119439036 + AluJo/FRAM SINE Alu 129 303 -9 255 203 64 129 chr6 69840610 69840777 -119438777 + HAL1 LINE L1 2299 2452 -55 2390 52 52 0 chr6 69840777 69841064 -119438490 - AluY SINE Alu -9 302 1 255 203 64 129 chr6 69841064 69841098 -119438456 + HAL1 LINE L1 2452 2487 -20 206 327 0 0 chr6 69841247 69841299 -119438255 + L2 LINE L2 3250 3301 -12 1899 115 3 24 chr6 69842544 69842867 -119436687 - AluSx SINE Alu 0 317 1 618 223 14 0 chr6 69842879 69843018 -119436536 - MER45R DNA AcHobo -645 936 796 2339 120 276 9 chr6 69843020 69843470 -119436084 + MER101B LTR ERV1 1 570 0 2159 208 152 62 chr6 69843470 69843571 -119435983 - MER45R DNA AcHobo -784 797 707 1969 93 75 4 chr6 69843571 69843849 -119435705 + AluSp SINE Alu 1 298 -15 2159 208 152 62 chr6 69843849 69844471 -119435083 - MER45R DNA AcHobo -874 707 9 2584 50 0 7 chr6 69845947 69846249 -119433305 - AluY SINE Alu -11 300 1 1674 149 115 52 chr6 69847476 69847936 -119431618 - MER51A LTR ERV1 0 634 1 2299 114 0 0 chr6 69848553 69848860 -119430694 + AluSq SINE Alu 1 307 -6 910 284 71 69 chr6 69849380 69849858 -119429696 - L2 LINE L2 0 3313 2835 1403 167 17 4 chr6 69849900 69850133 -119429421 + MER46A DNA MER2_type 1 236 0 579 283 70 5 chr6 69850395 69850582 -119428972 - MLT1J2 LTR MaLR 0 450 252 7373 70 5 4 chr6 69851457 69852655 -119426899 + L1PA8 LINE L1 4974 6172 0 37390 91 14 18 chr6 69852673 69858848 -119420706 + L1PA6 LINE L1 11 6154 0 519 323 9 5 chr6 69858847 69859064 -119420490 + L1MC4a LINE L1 5689 5906 -1902 * 2273 100 0 7 chr6 69859064 69859363 -119420191 + AluSx SINE Alu 1 297 -15 422 230 7 0 chr6 69859419 69859567 -119419987 + (TA)n Simple_repeat Simple_repeat 2 150 0 1822 123 72 4 chr6 69859681 69859957 -119419597 - AluSx SINE Alu -17 295 1 11960 105 14 1 chr6 69860070 69861809 -119417745 - L1P LINE L1 -1194 4952 3191 398 259 158 0 chr6 69861808 69861947 -119417607 - L1ME LINE L1 -415 5706 5546 * 376 336 15 0 chr6 69862576 69862707 -119416847 + MER94 DNA DNA 2 134 0 2242 130 52 47 chr6 69863757 69864142 -119415412 - MLT1B LTR MaLR -3 387 1 2940 177 32 50 chr6 69865179 69865834 -119413720 + L1MA4 LINE L1 5494 6125 -117 2287 104 3 0 chr6 69865834 69866132 -119413422 + AluSg SINE Alu 2 300 -10 2940 177 32 50 chr6 69866132 69866248 -119413306 + L1MA4 LINE L1 6125 6242 0 415 211 102 8 chr6 69866354 69866482 -119413072 + L1ME4a LINE L1 5982 6121 0 239 314 170 34 chr6 69866566 69866959 -119412595 + L2 LINE L2 2776 3240 -32 2050 134 7 0 chr6 69868305 69868595 -119410959 - AluSx SINE Alu -20 292 1 2314 76 0 17 chr6 69868611 69868942 -119410612 - AluY SINE Alu 0 326 1 362 328 147 0 chr6 69869131 69869247 -119410307 + L2 LINE L2 3140 3272 0 321 143 275 11 chr6 69869322 69869413 -119410141 + L2 LINE L2 3199 3313 0 263 161 18 0 chr6 69869615 69869671 -119409883 + CT-rich Low_complexity Low_complexity 3 59 0 1319 175 44 24 chr6 69869740 69869991 -119409563 - AluJb SINE Alu -19 293 38 282 179 0 0 chr6 69870140 69870196 -119409358 + (TA)n Simple_repeat Simple_repeat 1 56 0 2153 123 7 3 chr6 69870222 69870532 -119409022 - AluSx SINE Alu -1 311 1 514 306 26 34 chr6 69870534 69870802 -119408752 - L1ME3A LINE L1 -231 5939 5674 1784 129 89 11 chr6 69871131 69871411 -119408143 - AluSx SINE Alu -10 302 1 1734 126 60 39 chr6 69871572 69871857 -119407697 + AluSc SINE Alu 1 291 -18 3684 85 0 8 chr6 69871859 69872343 -119407211 + L1P LINE L1 1 480 -5666 376 88 0 0 chr6 69872448 69872505 -119407049 - L1PA8 LINE L1 -4 6168 6112 1566 63 0 19 chr6 69872510 69872717 -119406837 - SVA Other Other -2 1384 1182 6643 15 0 34 chr6 69872717 69873464 -119406090 - L1PA2 LINE L1 -2 6153 5432 2621 19 0 0 chr6 69873464 69873816 -119405738 + L1PA2 LINE L1 5087 5438 -717 4315 124 54 24 chr6 69873816 69875624 -119403930 - SVA Other Other -705 1196 15 896 218 150 4 chr6 69875736 69875970 -119403584 - L1MCa LINE L1 -6062 364 97 34 0 0 0 chr6 69876355 69876389 -119403165 + AT_rich Low_complexity Low_complexity 1 34 0 210 225 0 0 chr6 69877307 69877347 -119402207 + (CA)n Simple_repeat Simple_repeat 1 40 0 902 128 0 0 chr6 69878114 69878239 -119401315 + AluSq/x SINE Alu 1 125 -188 271 255 78 21 chr6 69878677 69878818 -119400736 - MER103 DNA DNA -14 152 4 552 236 93 7 chr6 69879071 69879232 -119400322 + MIR SINE MIR 2 177 -31 825 199 55 22 chr6 69879378 69879559 -119399995 + MER58A DNA MER1_type 37 223 -1 385 297 76 11 chr6 69879938 69880123 -119399431 - L1ME LINE L1 -323 5798 5602 249 308 0 0 chr6 69880639 69880691 -119398863 - L2 LINE L2 -257 3056 3005 318 357 43 14 chr6 69881494 69881634 -119397920 + L2 LINE L2 3121 3264 -8 198 252 252 34 chr6 69881877 69881996 -119397558 - MER5B DNA MER1_type 0 178 34 1193 143 0 0 chr6 69883913 69884088 -119395466 + AluJo SINE Alu 1 175 -137 289 230 310 10 chr6 69884202 69884302 -119395252 + FLAM_A SINE Alu 1 130 -3 21 36 0 0 chr6 69885084 69885112 -119394442 + AT_rich Low_complexity Low_complexity 1 28 0 1596 129 70 33 chr6 69885148 69885451 -119394103 - AluJb SINE Alu 0 313 1 299 252 119 28 chr6 69886894 69887037 -119392517 - L1ME4a LINE L1 -11 6110 5955 191 316 76 80 chr6 69887848 69888085 -119391469 - L2 LINE L2 -626 2688 2453 296 244 137 53 chr6 69888389 69888520 -119391034 + MIR SINE MIR 2 143 -119 529 265 166 7 chr6 69888864 69889015 -119390539 - MER5A DNA MER1_type -6 183 9 2238 177 42 8 chr6 69889233 69889732 -119389822 - L1MB8 LINE L1 -179 5999 5440 2180 108 0 3 chr6 69889742 69890037 -119389517 - AluSg SINE Alu -16 294 1 304 295 57 9 chr6 69890171 69890268 -119389286 - L1MC4 LINE L1 -1330 6712 6608 568 134 179 0 chr6 69890268 69890380 -119389174 - FLAM_C SINE Alu -1 132 1 385 333 64 0 chr6 69890788 69890944 -119388610 + MIR SINE MIR 93 258 -4 1502 184 75 4 chr6 69891236 69891514 -119388040 + AluJo SINE Alu 1 298 -14 296 283 22 19 chr6 69891564 69891758 -119387796 + L1P4 LINE L1 5245 5440 -734 1056 101 0 0 chr6 69891759 69891898 -119387656 + AluJb SINE Alu 1 139 -173 300 299 114 25 chr6 69891940 69892141 -119387413 + L1ME LINE L1 5527 5745 -417 2366 201 72 38 chr6 69893972 69894849 -119384705 - L1ME3 LINE L1 -291 5854 4961 855 219 118 4 chr6 69894843 69895113 -119384441 - L1ME3 LINE L1 -2920 3209 2909 * 2191 180 34 76 chr6 69895125 69895710 -119383844 + L1MB8 LINE L1 5587 6146 -32 2183 131 0 0 chr6 69895710 69896016 -119383538 - AluSx SINE Alu -6 306 1 2191 180 34 76 chr6 69896016 69896048 -119383506 + L1MB8 LINE L1 6146 6178 0 240 200 31 0 chr6 69896057 69896122 -119383432 - L1ME3 LINE L1 -3215 2914 2848 2039 131 3 3 chr6 69896122 69896419 -119383135 + AluSx SINE Alu 1 297 -15 284 236 91 0 chr6 69896466 69896576 -119382978 - L1ME3 LINE L1 -3277 2852 2733 5488 141 40 11 chr6 69896778 69898154 -119381400 - L1PB4 LINE L1 -2 6154 4740 23 54 0 0 chr6 69900372 69900409 -119379145 + AT_rich Low_complexity Low_complexity 1 37 0 770 189 0 0 chr6 69900897 69901019 -119378535 - FLAM_C SINE Alu -10 123 2 2460 66 0 35 chr6 69902555 69902873 -119376681 + AluY SINE Alu 1 307 -4 198 0 0 0 chr6 69903007 69903029 -119376525 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 255 291 58 39 chr6 69903952 69904055 -119375499 + L2 LINE L2 3207 3311 -2 2076 114 7 10 chr6 69904071 69904369 -119375185 - AluSx SINE Alu -15 297 1 480 299 73 63 chr6 69904455 69904756 -119374798 - L1ME3 LINE L1 -5493 626 323 2134 112 13 25 chr6 69904874 69905188 -119374366 - AluSx SINE Alu -2 310 1 275 81 0 0 chr6 69906150 69906187 -119373367 - tRNA-Cys-TGC tRNA tRNA -38 37 1 2288 100 0 3 chr6 69906679 69906978 -119372576 + AluSq SINE Alu 1 298 -15 195 42 0 0 chr6 69907291 69907315 -119372239 + (T)n Simple_repeat Simple_repeat 1 24 0 293 318 28 19 chr6 69907429 69907536 -119372018 + MIR SINE MIR 46 153 -109 1944 132 112 0 chr6 69908222 69908525 -119371029 - MER1B DNA MER1_type 0 337 1 212 240 20 0 chr6 69909390 69909440 -119370114 - MIR SINE MIR -14 248 198 348 272 26 35 chr6 69909493 69909607 -119369947 - MIR SINE MIR -74 188 76 1411 116 22 30 chr6 69910900 69911132 -119368422 - MER30 DNA MER1_type 0 230 1 232 256 0 12 chr6 69911411 69911493 -119368061 + (TA)n Simple_repeat Simple_repeat 1 81 0 904 194 99 0 chr6 69911544 69911755 -119367799 - L1MC3 LINE L1 0 7785 7554 198 0 0 0 chr6 69911760 69911782 -119367772 + (TCCCC)n Simple_repeat Simple_repeat 5 26 0 215 200 0 0 chr6 69911782 69911822 -119367732 + (TCTCG)n Simple_repeat Simple_repeat 2 41 0 1993 136 0 7 chr6 69911823 69912110 -119367444 - AluJb SINE Alu -27 285 1 317 211 42 0 chr6 69912112 69912183 -119367371 - L1MC3 LINE L1 -215 7570 7497 563 233 148 55 chr6 69912819 69913021 -119366533 + MER58A DNA MER1_type 4 224 0 21 0 0 0 chr6 69913137 69913158 -119366396 + AT_rich Low_complexity Low_complexity 1 21 0 1172 134 0 17 chr6 69913161 69913340 -119366214 - AluSg/x SINE Alu -3 307 132 286 56 0 0 chr6 69914639 69914675 -119364879 - MER116 DNA Mariner 0 80 45 351 335 57 57 chr6 69914693 69914905 -119364649 + L2 LINE L2 3043 3254 -18 2884 6 0 0 chr6 69914914 69915225 -119364329 - AluY SINE Alu 0 311 1 704 233 49 12 chr6 69915664 69915827 -119363727 + MIR SINE MIR 4 172 -90 225 245 133 20 chr6 69916095 69916193 -119363361 - MIR SINE MIR -75 187 79 2539 181 102 56 chr6 69916368 69916914 -119362640 - L1M4c LINE L1 -4471 1911 1166 225 0 0 0 chr6 69916914 69916939 -119362615 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 2539 181 102 56 chr6 69916939 69917207 -119362347 - L1M4c LINE L1 -5216 1166 912 3436 103 83 15 chr6 69917207 69917508 -119362046 - Tigger3(Golem) DNA MER2_type -120 2908 2629 2216 105 3 0 chr6 69917508 69917802 -119361752 - AluSx SINE Alu -17 295 1 3436 103 83 15 chr6 69917802 69918092 -119361462 - Tigger3(Golem) DNA MER2_type -399 2629 2277 1871 154 38 0 chr6 69918091 69918410 -119361144 - Tigger3(Golem) DNA MER2_type -2696 333 3 * 491 181 0 11 chr6 69918505 69918599 -119360955 + Tigger5 DNA MER2_type 14 106 -2217 216 97 0 0 chr6 69918658 69918689 -119360865 + (CA)n Simple_repeat Simple_repeat 2 32 0 674 232 104 21 chr6 69918700 69918941 -119360613 - L1M4 LINE L1 -1231 4915 4655 300 247 178 0 chr6 69919269 69919342 -119360212 + L2 LINE L2 3224 3309 -4 23 33 0 0 chr6 69919463 69919493 -119360061 + AT_rich Low_complexity Low_complexity 1 30 0 1308 241 123 41 chr6 69921816 69922615 -119356939 - L2 LINE L2 0 3313 2449 430 102 0 0 chr6 69923073 69923157 -119356397 - Alu SINE Alu 0 305 222 998 163 12 0 chr6 69923202 69923362 -119356192 + AluJb SINE Alu 136 297 -15 313 289 134 80 chr6 69923785 69924159 -119355395 + L1M2 LINE L1 1006 1399 -5450 344 45 0 0 chr6 69926768 69926812 -119352742 + MER21A LTR ERV1 39 82 -849 3825 146 161 44 chr6 69926812 69927615 -119351939 + MER21A LTR ERV1 35 931 0 627 247 58 0 chr6 69927660 69927814 -119351740 - MIR SINE MIR -91 171 9 184 233 0 0 chr6 69927928 69927958 -119351596 - L2 LINE L2 -22 3291 3262 258 308 59 71 chr6 69928251 69928420 -119351134 - MIR SINE MIR -27 235 69 2158 109 3 3 chr6 69928609 69928903 -119350651 + AluSx SINE Alu 1 294 -18 471 291 0 7 chr6 69929620 69929761 -119349793 + L1ME3 LINE L1 1075 1214 -4905 474 255 184 42 chr6 69931342 69931652 -119347902 + L1ME3 LINE L1 4029 4382 -1747 367 285 48 92 chr6 69931768 69931996 -119347558 + L1ME3 LINE L1 4598 4815 -1314 231 298 79 23 chr6 69932016 69932231 -119347323 + L1P LINE L1 4886 5112 -1034 538 316 90 34 chr6 69932437 69932885 -119346669 + L1ME3 LINE L1 5346 5822 -323 1223 161 69 72 chr6 69932885 69933190 -119346364 + AluSx SINE Alu 1 304 -8 538 316 90 34 chr6 69933190 69933206 -119346348 + L1ME3 LINE L1 5822 5836 -309 180 0 0 0 chr6 69934006 69934026 -119345528 + (A)n Simple_repeat Simple_repeat 1 20 0 2313 81 3 0 chr6 69934126 69934409 -119345145 - AluSx SINE Alu -11 301 18 513 272 83 26 chr6 69936439 69936667 -119342887 - L1ME LINE L1 -350 5771 5531 2271 95 0 3 chr6 69937797 69938091 -119341463 - AluSg SINE Alu -17 293 1 24 32 0 0 chr6 69940253 69940284 -119339270 + AT_rich Low_complexity Low_complexity 1 31 0 2135 139 50 14 chr6 69942187 69942604 -119336950 - L1MB3 LINE L1 -7 6176 5745 278 224 143 25 chr6 69942737 69942898 -119336656 - L1MC4a LINE L1 -1773 6035 5856 1753 143 17 17 chr6 69942923 69943224 -119336330 - AluSx SINE Alu -10 302 2 1523 173 36 22 chr6 69943341 69943619 -119335935 - AluJo SINE Alu -30 282 1 227 263 42 76 chr6 69943820 69943938 -119335616 - L2 LINE L2 -56 3257 3144 831 143 15 15 chr6 69944083 69944216 -119335338 + AluJ SINE Alu 1 133 -169 25 51 0 0 chr6 69945861 69945900 -119333654 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr6 69946676 69946699 -119332855 + AT_rich Low_complexity Low_complexity 1 23 0 1840 219 142 12 chr6 69946902 69947382 -119332172 + MLT1F LTR MaLR 1 542 0 207 0 0 0 chr6 69948093 69948116 -119331438 + (CAAT)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chr6 69948614 69948642 -119330912 + AT_rich Low_complexity Low_complexity 1 28 0 1641 159 44 14 chr6 69949210 69949388 -119330166 - AluJo SINE Alu -8 304 112 262 43 64 0 chr6 69949388 69949435 -119330119 + T-rich Low_complexity Low_complexity 5 54 0 1641 159 44 14 chr6 69949435 69949551 -119330003 - AluJo SINE Alu -200 112 1 1866 86 0 4 chr6 69949763 69950007 -119329547 + AluY SINE Alu 56 298 -13 1124 148 0 0 chr6 69950009 69950171 -119329383 + AluJ SINE Alu 136 297 -15 501 230 185 6 chr6 69950741 69950919 -119328635 + LTR16C LTR ERVL 224 433 -58 24 0 0 0 chr6 69951665 69951689 -119327865 + AT_rich Low_complexity Low_complexity 1 24 0 2359 105 0 0 chr6 69951732 69952037 -119327517 + AluSg SINE Alu 1 305 -5 430 299 0 35 chr6 69952397 69952541 -119327013 + MER34 LTR ERV1 5 143 -399 1943 110 11 7 chr6 69952549 69952822 -119326732 - AluSx SINE Alu -2 310 37 1051 222 52 74 chr6 69952827 69953237 -119326317 + MER34 LTR ERV1 143 542 0 25 65 0 0 chr6 69953509 69953555 -119325999 + AT_rich Low_complexity Low_complexity 1 46 0 2368 92 3 0 chr6 69954476 69954781 -119324773 - AluSx SINE Alu -6 306 1 227 213 0 0 chr6 69956407 69956454 -119323100 + (TA)n Simple_repeat Simple_repeat 2 48 0 254 283 0 22 chr6 69956455 69956547 -119323007 - L1MC4 LINE L1 -1339 6703 6614 230 296 0 0 chr6 69956475 69956563 -119322991 + L1MC4 LINE L1 6618 6705 -1337 * 223 186 0 29 chr6 69956568 69956638 -119322916 + (TA)n Simple_repeat Simple_repeat 1 68 0 233 264 35 11 chr6 69956653 69956740 -119322814 + L1MC4 LINE L1 6614 6702 -1340 1201 308 179 26 chr6 69957306 69958295 -119321259 - L2 LINE L2 -1858 1456 317 363 138 16 203 chr6 69959291 69959414 -119320140 - Tigger5 DNA MER2_type 0 2323 2224 380 157 14 14 chr6 69959455 69959525 -119320029 - Tigger5 DNA MER2_type -3 2320 2251 256 220 0 0 chr6 69959494 69959544 -119320010 - Tigger5 DNA MER2_type -2268 55 6 * 1872 134 70 0 chr6 69959841 69960125 -119319429 + AluSx SINE Alu 2 305 -7 3518 183 22 12 chr6 69960188 69960834 -119318720 + MER82 DNA MER2_type 2 653 0 182 152 0 43 chr6 69961490 69961536 -119318018 + A-rich Low_complexity Low_complexity 2 45 0 390 227 227 23 chr6 69962216 69962344 -119317210 + MIR SINE MIR 68 221 -41 1772 144 18 0 chr6 69962366 69962644 -119316910 + MER46B DNA MER2_type 4 161 -75 1718 163 0 31 chr6 69962647 69962966 -119316588 + AluJo SINE Alu 4 313 0 285 308 68 48 chr6 69963445 69963591 -119315963 - MER5A DNA MER1_type -2 187 39 466 249 53 7 chr6 69963750 69963957 -119315597 + LTR16B LTR ERVL 209 456 -8 416 254 0 141 chr6 69964017 69964075 -119315479 - MER5B DNA MER1_type -1 177 112 1848 146 13 19 chr6 69964075 69964383 -119315171 + AluJo SINE Alu 1 306 -6 416 254 0 141 chr6 69964383 69964439 -119315115 - MER5B DNA MER1_type -66 112 84 2015 100 19 81 chr6 69964439 69964798 -119314756 - MER1B DNA MER1_type 0 337 1 416 254 0 141 chr6 69964798 69964824 -119314730 - MER5B DNA MER1_type -94 84 56 7811 186 138 41 chr6 69965061 69965792 -119313762 + L1ME1 LINE L1 16 675 -5865 1837 143 42 3 chr6 69965792 69966079 -119313475 - AluJb SINE Alu -14 298 1 7811 186 138 41 chr6 69966079 69967443 -119312111 + L1ME1 LINE L1 675 2336 -4204 1954 148 57 9 chr6 69967443 69967774 -119311780 + MER7A DNA MER2_type 1 345 -1 7811 186 138 41 chr6 69967774 69967870 -119311684 + L1ME1 LINE L1 2336 2421 -4119 389 181 181 8 chr6 69967853 69967986 -119311568 + L1ME1 LINE L1 2994 3149 -3391 * 2825 134 35 35 chr6 69967994 69968522 -119311032 - MER41B LTR ERV1 -12 597 114 7440 221 82 20 chr6 69968540 69968781 -119310773 + L1ME1 LINE L1 3164 3389 -3171 1940 139 13 0 chr6 69968781 69969083 -119310471 - AluSx SINE Alu -6 306 1 7440 221 82 20 chr6 69969083 69970045 -119309509 + L1ME1 LINE L1 3389 4290 -2270 2074 126 3 10 chr6 69970045 69970354 -119309200 + AluSx SINE Alu 1 307 -5 7440 221 82 20 chr6 69970354 69972327 -119307227 + L1ME1 LINE L1 4290 6534 -26 27 49 0 0 chr6 69972330 69972371 -119307183 + AT_rich Low_complexity Low_complexity 1 41 0 1778 248 52 48 chr6 69974252 69974945 -119304609 + L1ME3A LINE L1 5460 6155 -15 4733 138 30 36 chr6 69975100 69975631 -119303923 + L1MB3 LINE L1 5297 5822 -361 629 200 78 0 chr6 69975631 69975746 -119303808 + FLAM_A SINE Alu 2 125 -8 4733 138 30 36 chr6 69975746 69976099 -119303455 + L1MB3 LINE L1 5822 6176 -7 1137 217 74 75 chr6 69976251 69976794 -119302760 + MER34 LTR ERV1 1 542 0 859 287 97 50 chr6 69977544 69978357 -119301197 - L2 LINE L2 -38 3275 2431 2364 97 7 0 chr6 69978837 69979145 -119300409 + AluSx SINE Alu 1 310 -2 986 211 78 9 chr6 69980158 69980376 -119299178 + MIR SINE MIR 23 255 -7 664 281 115 73 chr6 69980599 69980953 -119298601 - L1MEd LINE L1 -4905 1214 876 2335 103 0 13 chr6 69980953 69981265 -119298289 - AluSg SINE Alu -2 308 1 664 281 115 73 chr6 69981265 69981816 -119297738 - L1MEd LINE L1 -5243 876 271 299 261 45 11 chr6 69982516 69982604 -119296950 + MER20B DNA MER1_type 35 125 -658 253 240 25 50 chr6 69982877 69982998 -119296556 + L1MC/D LINE L1 5194 5311 -835 385 279 120 17 chr6 69983015 69983271 -119296283 + L1MC/D LINE L1 5359 5637 -484 2285 85 17 3 chr6 69983746 69984041 -119295513 + AluSg SINE Alu 1 299 -11 352 243 140 37 chr6 69985081 69985145 -119294409 - L1MC4a LINE L1 -1716 6092 6036 1524 184 0 44 chr6 69985145 69985438 -119294116 - AluJo SINE Alu -32 280 1 352 243 140 37 chr6 69985438 69985509 -119294045 - L1MC4a LINE L1 -1772 6036 5943 2154 113 0 0 chr6 69985985 69986298 -119293256 - AluY SINE Alu 0 313 1 1398 194 81 0 chr6 69986366 69986650 -119292904 + AluJo SINE Alu 1 307 -5 2146 125 0 3 chr6 69986658 69986962 -119292592 + AluSq SINE Alu 3 305 -8 2577 150 17 92 chr6 69987038 69987579 -119291975 + MLT1D LTR MaLR 1 500 -5 8060 31 0 0 chr6 69987893 69989401 -119290153 - L1PA5 LINE L1 -2 6152 4644 7381 43 0 0 chr6 69989403 69990311 -119289243 + L1P LINE L1 2353 3260 -2886 271 325 106 75 chr6 69990407 69990454 -119289100 + L2 LINE L2 2812 2856 -416 2296 125 0 0 chr6 69990454 69990765 -119288789 - AluSx SINE Alu 0 312 2 271 325 106 75 chr6 69990765 69990928 -119288626 + L2 LINE L2 2856 3034 -238 1791 149 0 36 chr6 69990928 69991229 -119288325 + AluJb SINE Alu 1 290 -22 271 325 106 75 chr6 69991229 69991282 -119288272 + L2 LINE L2 3034 3084 -188 352 333 41 7 chr6 69991352 69991499 -119288055 - L2 LINE L2 -5 3267 3116 2404 71 7 10 chr6 69991567 69991876 -119287678 - AluSp SINE Alu -5 308 1 812 252 134 10 chr6 69991968 69992274 -119287280 + HAL1 LINE L1 1689 2032 -475 1934 163 0 32 chr6 69992282 69992418 -119287136 + AluJo SINE Alu 1 140 -172 2483 71 3 3 chr6 69992418 69992729 -119286825 + AluY SINE Alu 1 311 0 1934 163 0 32 chr6 69992729 69992905 -119286649 + AluJo SINE Alu 140 303 -9 257 234 55 114 chr6 69992998 69993164 -119286390 + HAL1 LINE L1 2299 2453 -54 2340 57 53 0 chr6 69993164 69993447 -119286107 - AluY SINE Alu -13 298 1 257 234 55 114 chr6 69993447 69993481 -119286073 + HAL1 LINE L1 2453 2487 -20 206 327 0 0 chr6 69993630 69993682 -119285872 + L2 LINE L2 3250 3301 -12 1885 118 3 24 chr6 69994927 69995250 -119284304 - AluSx SINE Alu 0 317 1 618 223 14 0 chr6 69995262 69995401 -119284153 - MER45R DNA AcHobo -645 936 796 2339 120 276 9 chr6 69995403 69995853 -119283701 + MER101B LTR ERV1 1 570 0 2159 208 152 62 chr6 69995853 69995954 -119283600 - MER45R DNA AcHobo -784 797 707 1947 98 76 4 chr6 69995954 69996231 -119283323 + AluSp SINE Alu 1 297 -16 2159 208 152 62 chr6 69996231 69996853 -119282701 - MER45R DNA AcHobo -874 707 9 2584 50 0 7 chr6 69998329 69998631 -119280923 - AluY SINE Alu -11 300 1 1674 149 115 52 chr6 69999858 70000318 -119279236 - MER51A LTR ERV1 0 634 1 2299 114 0 0 chr6 70000935 70001242 -119278312 + AluSq SINE Alu 1 307 -6 910 284 71 69 chr6 70001762 70002240 -119277314 - L2 LINE L2 0 3313 2835 1384 172 17 4 chr6 70002282 70002515 -119277039 + MER46A DNA MER2_type 1 236 0 579 283 70 5 chr6 70002777 70002964 -119276590 - MLT1J2 LTR MaLR 0 450 252 428 202 67 10 chr6 70003752 70003856 -119275698 - MIR SINE MIR -12 250 141 2276 103 0 0 chr6 70003915 70004216 -119275338 - AluSx SINE Alu -11 301 1 962 189 46 0 chr6 70005504 70005679 -119273875 - MER5A DNA MER1_type -6 183 1 5374 78 6 3 chr6 70005921 70006579 -119272975 + PABL_A LTR ERV1 1 660 0 2484 73 0 0 chr6 70006692 70006993 -119272561 + AluY SINE Alu 1 301 -10 363 44 0 0 chr6 70007480 70007525 -119272029 + (CA)n Simple_repeat Simple_repeat 2 46 0 326 107 18 0 chr6 70008107 70008163 -119271391 + (CA)n Simple_repeat Simple_repeat 2 58 0 294 29 0 0 chr6 70008190 70008225 -119271329 + (CA)n Simple_repeat Simple_repeat 1 35 0 2443 74 3 0 chr6 70008746 70009044 -119270510 - AluSp SINE Alu -12 301 3 821 264 84 0 chr6 70009113 70009340 -119270214 + MIR SINE MIR 14 259 -3 665 259 103 62 chr6 70010744 70010987 -119268567 - MLT1H LTR MaLR -200 349 97 410 250 134 9 chr6 70010987 70011099 -119268455 - FLAM_A SINE Alu -16 126 1 967 243 65 132 chr6 70011124 70011557 -119267997 + LTR16A LTR ERVL 1 404 -53 1154 232 224 13 chr6 70012603 70013046 -119266508 - LTR33A LTR ERVL -2 521 1 734 269 149 29 chr6 70013130 70013506 -119266048 + LTR33 LTR ERVL 99 519 -2 377 248 52 59 chr6 70013576 70013729 -119265825 + MIR SINE MIR 2 153 -109 180 277 85 0 chr6 70014523 70014570 -119264984 + L2 LINE L2 3214 3264 -8 180 328 35 17 chr6 70014622 70014680 -119264874 + L2 LINE L2 3003 3061 -211 1853 208 50 28 chr6 70014704 70015161 -119264393 - MLT1C LTR MaLR 0 467 1 1731 128 0 4 chr6 70016070 70016320 -119263234 - AluSc SINE Alu -9 300 52 261 211 11 78 chr6 70016459 70016549 -119263005 + MIR SINE MIR 129 212 -50 236 260 24 118 chr6 70018284 70018453 -119261101 + MIR SINE MIR 107 259 -3 688 251 16 11 chr6 70018760 70018943 -119260611 - LTR16C LTR ERVL -33 458 275 658 176 17 8 chr6 70019108 70019227 -119260327 + FLAM_C SINE Alu 7 126 -17 4084 31 0 0 chr6 70019331 70019819 -119259735 - L1P LINE L1 -782 5364 4877 1054 139 0 0 chr6 70019894 70020045 -119259509 + AluJo SINE Alu 7 157 -155 494 184 0 11 chr6 70020045 70020132 -119259422 - AluJ/FLAM SINE Alu -225 87 2 38215 38 3 0 chr6 70020898 70026249 -119253305 - L1PA3 LINE L1 -3 6152 791 1792 140 31 3 chr6 70077556 70077842 -119201712 + MER49 LTR ERV1 1 294 -629 1671 191 31 14 chr6 70077869 70078226 -119201328 + MER4D LTR ERV1 541 903 0 1076 137 12 0 chr6 70080043 70080204 -119199350 + AluSg/x SINE Alu 136 298 -12 436 242 170 50 chr6 70081164 70081346 -119198208 + L1MC4a LINE L1 6443 6646 -1162 256 217 48 36 chr6 70081346 70081429 -119198125 + MIR3 SINE MIR 122 205 -3 2367 94 0 0 chr6 70082036 70082333 -119197221 - AluSg SINE Alu -13 297 1 4479 167 44 27 chr6 70082513 70083946 -119195608 + L1MA7 LINE L1 4812 6291 0 352 287 120 6 chr6 70084836 70085003 -119194551 + LTR37B LTR ERV1 198 383 -85 612 200 0 0 chr6 70086227 70086342 -119193212 + FRAM SINE Alu 62 176 0 401 260 31 8 chr6 70086491 70086618 -119192936 + L1ME4a LINE L1 5989 6118 -3 21 0 0 0 chr6 70086652 70086673 -119192881 + AT_rich Low_complexity Low_complexity 1 21 0 2197 123 3 0 chr6 70086905 70087215 -119192339 + AluSx SINE Alu 1 311 -1 659 122 10 0 chr6 70087615 70087713 -119191841 + AluSq SINE Alu 4 102 -211 954 72 7 29 chr6 70087715 70087853 -119191701 + AluSp/q SINE Alu 169 303 -10 1839 154 31 0 chr6 70088665 70088957 -119190597 + AluJb SINE Alu 3 303 -9 2310 168 42 0 chr6 70089274 70089684 -119189870 + MSTA LTR MaLR 2 428 0 759 132 23 8 chr6 70090762 70090891 -119188663 + MER67B LTR ERV1 531 661 0 198 231 0 0 chr6 70091456 70091495 -119188059 - MER5A DNA MER1_type -3 186 148 1655 169 22 35 chr6 70091536 70091849 -119187705 + AluJb SINE Alu 3 311 -1 527 251 164 12 chr6 70092303 70092397 -119187157 - MIR SINE MIR -34 228 150 2301 94 3 3 chr6 70092397 70092695 -119186859 + AluSp SINE Alu 3 300 -13 527 251 164 12 chr6 70092695 70092771 -119186783 - MIR SINE MIR -112 150 32 1673 45 0 0 chr6 70093178 70093379 -119186175 + L1PA3 LINE L1 5953 6153 -2 819 202 79 6 chr6 70093450 70093628 -119185926 - MER58A DNA MER1_type -33 191 1 24 0 0 0 chr6 70094025 70094049 -119185505 + AT_rich Low_complexity Low_complexity 1 24 0 1545 164 39 18 chr6 70094961 70095247 -119184307 - AluJo SINE Alu -18 294 3 2280 105 0 22 chr6 70095861 70096176 -119183378 + AluSx SINE Alu 3 310 -2 484 183 7 65 chr6 70096630 70096772 -119182782 + L1MD2 LINE L1 5335 5476 -690 303 125 0 36 chr6 70096775 70096831 -119182723 + MLT1A2 LTR MaLR 321 374 0 * 1059 140 19 128 chr6 70096831 70097083 -119182471 - MLT1B LTR MaLR -158 232 9 1850 171 139 19 chr6 70097093 70097509 -119182045 + MER31B LTR ERV1 1 466 0 1069 234 176 16 chr6 70097509 70097890 -119181664 + L1MD2 LINE L1 5906 6347 -12 335 221 15 15 chr6 70097905 70097973 -119181581 - LTR67 LTR ERVL -87 470 403 2033 120 14 0 chr6 70099002 70099293 -119180261 + AluSx SINE Alu 1 295 -17 510 217 0 0 chr6 70099836 70099942 -119179612 - L1ME LINE L1 -384 5782 5677 868 208 68 14 chr6 70099945 70100166 -119179388 - L1ME LINE L1 -613 5551 5319 882 280 42 31 chr6 70100177 70100531 -119179023 + L1ME2 LINE L1 5791 6148 -16 2014 72 80 4 chr6 70101105 70101369 -119178185 + AluSc SINE Alu 1 284 -25 180 111 0 0 chr6 70101604 70101631 -119177923 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2011 110 62 0 chr6 70104183 70104474 -119175080 + AluSx SINE Alu 1 309 -3 362 273 143 39 chr6 70105433 70105827 -119173727 + L2 LINE L2 1900 2379 -935 272 191 32 16 chr6 70106031 70106094 -119173460 - LTR67 LTR ERVL -46 511 448 2212 116 0 0 chr6 70106105 70106397 -119173157 - AluSg SINE Alu -18 292 1 23 0 0 0 chr6 70106828 70106851 -119172703 + AT_rich Low_complexity Low_complexity 1 23 0 199 374 86 0 chr6 70107428 70107591 -119171963 + L2 LINE L2 2556 2732 -582 22 56 0 0 chr6 70107877 70107913 -119171641 + AT_rich Low_complexity Low_complexity 1 36 0 2449 73 3 16 chr6 70107920 70108233 -119171321 + AluSc SINE Alu 1 309 0 11924 132 25 15 chr6 70108714 70109353 -119170201 + Tigger1 DNA MER2_type 1 632 -1786 2382 107 0 0 chr6 70109353 70109662 -119169892 + AluSx SINE Alu 1 309 -3 11924 132 25 15 chr6 70109662 70111338 -119168216 + Tigger1 DNA MER2_type 632 2418 0 250 318 0 0 chr6 70112244 70112310 -119167244 - L2 LINE L2 -5 3267 3202 494 161 11 0 chr6 70113114 70113207 -119166347 + HSMAR1 DNA Mariner 1 94 -1193 388 229 99 93 chr6 70114108 70114462 -119165092 + L1ME4a LINE L1 5585 5940 -181 37 23 0 0 chr6 70114580 70114624 -119164930 + AT_rich Low_complexity Low_complexity 1 44 0 601 237 154 13 chr6 70114767 70115048 -119164506 + L1ME1 LINE L1 3611 3919 -2227 1364 187 66 4 chr6 70115049 70115306 -119164248 - AluJb SINE Alu -34 278 6 1978 141 89 14 chr6 70115312 70115673 -119163881 - MSTA LTR MaLR -40 388 1 1176 249 30 9 chr6 70115697 70116026 -119163528 + L1ME1 LINE L1 3964 4299 -1847 * 1467 216 81 43 chr6 70116022 70116258 -119163296 + L1ME1 LINE L1 4665 4891 -1255 2147 99 3 40 chr6 70116258 70116582 -119162972 - AluSx SINE Alu 0 312 1 1467 216 81 43 chr6 70116582 70116901 -119162653 + L1ME1 LINE L1 4891 5241 -905 1416 188 101 58 chr6 70116904 70117146 -119162408 + L1ME1 LINE L1 5407 5674 -492 2237 85 7 3 chr6 70117146 70117440 -119162114 + AluY SINE Alu 1 295 -16 1416 188 101 58 chr6 70117440 70117595 -119161959 + L1ME1 LINE L1 5674 5821 -345 22 35 0 0 chr6 70117596 70117625 -119161929 + AT_rich Low_complexity Low_complexity 1 29 0 1224 181 14 14 chr6 70117680 70117896 -119161658 + AluJo SINE Alu 73 288 -24 709 258 6 0 chr6 70117899 70118077 -119161477 + L1ME1 LINE L1 5837 6015 -151 2021 128 7 3 chr6 70118180 70118486 -119161068 + LTR9B LTR ERV1 338 644 0 442 285 99 7 chr6 70118637 70118788 -119160766 + MIR SINE MIR 84 248 -14 455 91 15 0 chr6 70119071 70119137 -119160417 + MER41A LTR ERV1 398 464 -90 27 29 0 0 chr6 70119837 70119871 -119159683 + AT_rich Low_complexity Low_complexity 1 34 0 201 156 0 0 chr6 70120694 70120726 -119158828 + (ATG)n Simple_repeat Simple_repeat 3 34 0 182 250 0 0 chr6 70120877 70120917 -119158637 + L2 LINE L2 3224 3263 -9 215 309 111 12 chr6 70122202 70122283 -119157271 - L2 LINE L2 -24 3248 3160 374 223 64 10 chr6 70122624 70122777 -119156777 + MLT1A2 LTR MaLR 163 374 0 2277 93 0 19 chr6 70123058 70123370 -119156184 + AluY SINE Alu 1 306 -5 10941 163 23 45 chr6 70124298 70126659 -119152895 + L1PA14 LINE L1 1368 3779 -3805 7188 50 0 2 chr6 70126659 70127601 -119151953 + L1PA5 LINE L1 5237 6176 0 10941 163 23 45 chr6 70127601 70128362 -119151192 + L1PA14 LINE L1 3779 4555 -3029 2215 111 3 3 chr6 70128362 70128668 -119150886 + AluSc SINE Alu 1 306 -3 339 42 0 0 chr6 70128675 70128723 -119150831 + AluSc SINE Alu 250 297 -2 10941 163 23 45 chr6 70128723 70128900 -119150654 + L1PA14 LINE L1 4561 4648 -2936 15026 167 29 9 chr6 70128903 70133939 -119145615 + L1PB1 LINE L1 1729 6865 -2 22 0 0 0 chr6 70133939 70133961 -119145593 + AT_rich Low_complexity Low_complexity 1 22 0 6299 91 20 1 chr6 70134242 70136230 -119143324 + L1PA14 LINE L1 5588 7599 0 517 101 13 0 chr6 70136408 70136487 -119143067 - MADE1 DNA Mariner 0 80 1 1586 188 0 34 chr6 70137205 70137525 -119142029 + AluJb SINE Alu 1 309 -3 438 368 26 0 chr6 70137734 70137927 -119141627 + L2 LINE L2 2258 2455 -859 729 282 172 0 chr6 70137927 70138136 -119141418 + MIR SINE MIR 2 246 -16 1013 311 74 37 chr6 70138168 70138696 -119140858 + L2 LINE L2 2465 3011 -302 337 339 18 18 chr6 70138707 70138819 -119140735 + L2 LINE L2 3160 3271 -42 285 175 138 12 chr6 70138938 70139018 -119140536 + LTR41 LTR ERVL 8 97 -676 390 327 7 20 chr6 70139108 70139261 -119140293 + MIR SINE MIR 37 187 -75 282 380 67 49 chr6 70139325 70139549 -119140005 - L2 LINE L2 -9 3263 3036 1847 157 30 3 chr6 70140156 70140352 -119139202 - AluJo SINE Alu 0 328 119 348 24 0 0 chr6 70140352 70140393 -119139161 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1847 157 30 3 chr6 70140393 70140516 -119139038 - AluJo SINE Alu -209 119 1 565 220 60 44 chr6 70140544 70140726 -119138828 + L1ME LINE L1 5588 5772 -398 1524 242 88 8 chr6 70140739 70141218 -119138336 + L1MC4 LINE L1 7384 7900 -142 24 32 0 0 chr6 70141261 70141292 -119138262 + AT_rich Low_complexity Low_complexity 1 31 0 1367 174 124 57 chr6 70142059 70142429 -119137125 + MLT1C LTR MaLR 1 510 -86 817 253 96 78 chr6 70142714 70143161 -119136393 - MLT1L LTR MaLR -10 605 151 334 321 30 71 chr6 70145589 70145757 -119133797 + MIR3 SINE MIR 42 202 -6 252 274 105 24 chr6 70147445 70147736 -119131818 + L1ME LINE L1 5414 5783 -338 189 0 0 0 chr6 70147789 70147810 -119131744 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 458 272 59 0 chr6 70147923 70148059 -119131495 + L1ME LINE L1 533 676 -5443 1890 162 6 16 chr6 70148254 70148569 -119130985 + AluJo SINE Alu 1 312 0 366 267 25 23 chr6 70148571 70148870 -119130684 + ALR/Alpha Satellite centromeric 1 299 -31 1202 253 58 35 chr6 70149274 70149432 -119130122 + L1ME LINE L1 4140 4293 -1836 2087 111 3 41 chr6 70149432 70149747 -119129807 + AluSg SINE Alu 1 303 -7 1202 253 58 35 chr6 70149747 70150106 -119129448 + L1ME LINE L1 4293 4669 -1460 510 245 5 34 chr6 70150090 70150298 -119129256 + L1ME LINE L1 5256 5457 -688 * 631 193 0 8 chr6 70150307 70150426 -119129128 + FLAM_A SINE Alu 1 118 -15 1055 190 115 82 chr6 70150426 70150695 -119128859 - AluJb SINE Alu -34 278 1 618 239 0 23 chr6 70150696 70150826 -119128728 - AluJo/FLAM SINE Alu -171 131 5 245 171 0 24 chr6 70150847 70150888 -119128666 + FRAM SINE Alu 1 34 -131 617 144 0 0 chr6 70150946 70151036 -119128518 + FRAM SINE Alu 43 132 -44 10098 125 18 10 chr6 70151040 70151734 -119127820 + L1PA11 LINE L1 3642 4329 -1845 1977 138 17 0 chr6 70151734 70152025 -119127529 + AluSx SINE Alu 1 296 -16 2472 25 4 0 chr6 70152028 70152346 -119127208 + AluY SINE Alu 1 319 0 10098 125 18 10 chr6 70152346 70154052 -119125502 + L1PA11 LINE L1 4330 6058 -116 282 290 93 0 chr6 70154157 70154264 -119125290 - MIR SINE MIR -27 235 119 23 0 0 0 chr6 70154975 70154998 -119124556 + AT_rich Low_complexity Low_complexity 1 23 0 2182 109 3 13 chr6 70155622 70155926 -119123628 + AluSx SINE Alu 1 301 -11 499 312 58 0 chr6 70156534 70156688 -119122866 + MIR SINE MIR 88 250 -12 1060 293 57 12 chr6 70157503 70157838 -119121716 + MLT1I LTR MaLR 60 409 0 420 213 37 19 chr6 70157836 70157944 -119121610 - Charlie7 DNA MER1_type 0 2612 2503 * 225 244 49 61 chr6 70158237 70158319 -119121235 + MER5A DNA MER1_type 34 114 -75 1267 284 131 11 chr6 70158643 70159100 -119120454 + MLT1H1 LTR MaLR 8 519 -36 520 195 0 0 chr6 70159870 70159957 -119119597 + MER81 DNA DNA 1 87 -27 229 339 65 86 chr6 70160289 70160642 -119118912 + L2 LINE L2 2855 3201 -71 1786 140 57 23 chr6 70160642 70160942 -119118612 - AluJo SINE Alu -2 310 1 229 339 65 86 chr6 70160942 70160971 -119118583 + L2 LINE L2 3201 3229 -43 23 92 0 0 chr6 70161459 70161524 -119118030 + AT_rich Low_complexity Low_complexity 1 65 0 889 274 69 37 chr6 70162229 70163136 -119116418 + L1MEd LINE L1 586 1569 -4612 1668 241 38 87 chr6 70167012 70167498 -119112056 - MLT1H1 LTR MaLR -1 554 99 899 144 53 5 chr6 70167498 70167686 -119111868 + L1MB3 LINE L1 5980 6176 -7 1668 241 38 87 chr6 70167686 70167777 -119111777 - MLT1H1 LTR MaLR -456 99 5 24 77 0 0 chr6 70167844 70167896 -119111658 + AT_rich Low_complexity Low_complexity 1 52 0 405 349 177 23 chr6 70168566 70168726 -119110828 - L2 LINE L2 0 3272 3138 2177 91 14 7 chr6 70168726 70169023 -119110531 + AluSq SINE Alu 1 299 -14 405 349 177 23 chr6 70169023 70169387 -119110167 - L2 LINE L2 -134 3138 2662 2246 106 3 0 chr6 70169389 70169691 -119109863 + AluSg SINE Alu 1 303 -7 219 416 0 0 chr6 70169698 70169775 -119109779 - L2 LINE L2 -707 2607 2531 744 232 114 25 chr6 70170242 70170479 -119109075 - MIR SINE MIR 0 262 5 1717 154 38 20 chr6 70170678 70170971 -119108583 + AluJb SINE Alu 1 298 -14 2294 103 10 6 chr6 70171286 70171598 -119107956 - AluSq SINE Alu 0 313 1 212 182 0 18 chr6 70172372 70172427 -119107127 + GA-rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr6 70172903 70172924 -119106630 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 70173459 70173480 -119106074 + (T)n Simple_repeat Simple_repeat 1 21 0 2178 114 0 0 chr6 70174081 70174378 -119105176 + AluSg SINE Alu 1 297 -13 667 269 12 0 chr6 70174554 70174725 -119104829 - MIR SINE MIR -4 258 86 190 367 124 17 chr6 70174761 70175172 -119104382 + L2 LINE L2 2162 2616 -698 1100 166 67 14 chr6 70175265 70175488 -119104066 + MER46A DNA MER2_type 1 235 -1 28 48 0 0 chr6 70176233 70176275 -119103279 + AT_rich Low_complexity Low_complexity 1 42 0 1117 264 93 64 chr6 70177010 70177575 -119101979 - MER20B DNA MER1_type -1 783 189 2171 105 10 0 chr6 70177575 70177871 -119101683 + AluSc SINE Alu 1 299 -10 1117 264 93 64 chr6 70177871 70178066 -119101488 - MER20B DNA MER1_type -595 189 1 31 0 0 0 chr6 70178243 70178274 -119101280 + AT_rich Low_complexity Low_complexity 1 31 0 425 239 60 60 chr6 70178803 70178875 -119100679 + MIR SINE MIR 94 165 -97 1698 177 18 0 chr6 70178875 70179152 -119100402 + AluJo SINE Alu 1 282 -30 425 239 60 60 chr6 70179152 70179246 -119100308 + MIR SINE MIR 164 260 -2 2254 95 0 10 chr6 70180001 70180295 -119099259 + AluSg SINE Alu 1 291 -19 4038 123 2 22 chr6 70180373 70181006 -119098548 + MER41B LTR ERV1 15 634 -1 315 0 0 0 chr6 70181111 70181146 -119098408 + (CA)n Simple_repeat Simple_repeat 2 36 0 1820 158 3 30 chr6 70181157 70181455 -119098099 + AluSx SINE Alu 4 293 -19 1015 170 280 24 chr6 70182501 70182872 -119096682 + MER31B LTR ERV1 1 466 0 27 0 0 0 chr6 70185612 70185639 -119093915 + AT_rich Low_complexity Low_complexity 1 27 0 40423 36 23 1 chr6 70185749 70191752 -119087802 - L1PA3 LINE L1 0 6155 22 316 273 34 0 chr6 70191864 70191952 -119087602 - MIR SINE MIR -30 232 142 916 174 60 0 chr6 70191955 70192122 -119087432 - AluJo SINE Alu -21 291 115 3212 164 40 27 chr6 70192123 70192828 -119086726 + L1MA8 LINE L1 5568 6281 -10 739 259 104 27 chr6 70192955 70193406 -119086148 + HAL1 LINE L1 1186 1671 -836 9938 198 58 56 chr6 70193411 70195415 -119084139 + L1MB5 LINE L1 2035 4034 -2376 2317 88 0 23 chr6 70195415 70195720 -119083834 - AluSg SINE Alu -12 298 1 9938 198 58 56 chr6 70195720 70196108 -119083446 + L1MB5 LINE L1 4034 4420 -1990 729 97 303 0 chr6 70196108 70196253 -119083301 + AluY SINE Alu 122 310 -1 9938 198 58 56 chr6 70196253 70196816 -119082738 + L1MB5 LINE L1 4420 4980 -1430 2089 118 70 17 chr6 70196816 70197172 -119082382 - THE1C LTR MaLR 0 375 1 9938 198 58 56 chr6 70197172 70198426 -119081128 + L1MB5 LINE L1 4980 6402 -8 1996 139 23 49 chr6 70198475 70198819 -119080735 + MER1B DNA MER1_type 3 337 0 2157 103 10 10 chr6 70199419 70199719 -119079835 + AluSx SINE Alu 1 300 -12 2016 154 0 0 chr6 70199876 70200175 -119079379 - AluSx SINE Alu -13 299 1 1729 191 23 3 chr6 70201021 70201325 -119078229 + AluJb SINE Alu 1 310 -2 1507 202 28 3 chr6 70202522 70202809 -119076745 - AluJo SINE Alu -18 294 1 1655 62 45 0 chr6 70202822 70203046 -119076508 - L1PA8 LINE L1 0 6172 5939 947 193 5 67 chr6 70203437 70203660 -119075894 - MIR SINE MIR 0 262 54 2745 73 11 11 chr6 70203892 70204262 -119075292 - THE1C LTR MaLR -3 372 3 885 261 23 43 chr6 70204682 70204939 -119074615 + MIR SINE MIR 11 262 0 716 318 171 8 chr6 70204940 70205601 -119073953 + L2 LINE L2 1955 2723 -591 593 184 9 0 chr6 70205769 70205878 -119073676 + MER20 DNA MER1_type 110 219 0 214 368 84 0 chr6 70206790 70207029 -119072525 + L2 LINE L2 2344 2602 -712 215 263 147 0 chr6 70207037 70207132 -119072422 + L2 LINE L2 1913 2021 -1293 449 309 80 92 chr6 70207419 70207833 -119071721 + L2 LINE L2 2864 3272 0 250 263 40 30 chr6 70209450 70209549 -119070005 - MIR SINE MIR -70 192 93 463 204 72 145 chr6 70210099 70210206 -119069348 - MIR SINE MIR -22 240 158 1864 61 56 0 chr6 70210206 70210437 -119069117 - AluSg SINE Alu -30 280 37 463 204 72 145 chr6 70210437 70210564 -119068990 - MIR SINE MIR -104 158 23 21 0 0 0 chr6 70210773 70210794 -119068760 + AT_rich Low_complexity Low_complexity 1 21 0 298 291 146 9 chr6 70211956 70212066 -119067488 + L2 LINE L2 3144 3268 -4 2274 102 0 9 chr6 70212070 70212385 -119067169 - AluSx SINE Alu 0 312 1 721 321 49 29 chr6 70213165 70213514 -119066040 - L2 LINE L2 -9 3304 2949 650 276 45 31 chr6 70213532 70213890 -119065664 + L1ME3A LINE L1 4755 5117 -1029 850 70 0 0 chr6 70213890 70214005 -119065549 + L1MB3 LINE L1 6054 6168 -15 1819 172 10 3 chr6 70214108 70214399 -119065155 - AluJb SINE Alu -19 293 1 4288 122 57 27 chr6 70214550 70216377 -119063177 + SVA Other Other 1 1196 -190 2472 19 0 0 chr6 70216377 70216731 -119062823 - L1PA2 LINE L1 -717 5438 5085 6228 15 0 34 chr6 70216731 70217476 -119062078 + L1PA2 LINE L1 5432 6153 -2 1561 63 0 19 chr6 70217476 70217683 -119061871 + SVA Other Other 1182 1384 -2 356 98 0 0 chr6 70217688 70217749 -119061805 + L1PA8 LINE L1 6112 6172 0 1033 246 89 60 chr6 70217749 70218195 -119061359 + L1ME3A LINE L1 5293 5725 -445 1913 145 23 0 chr6 70218195 70218499 -119061055 + AluJb SINE Alu 1 311 -1 1033 246 89 60 chr6 70218499 70218651 -119060903 + L1ME3A LINE L1 5725 5871 -299 713 243 138 102 chr6 70218651 70219080 -119060474 + LTR33 LTR ERVL 1 413 -108 2226 65 54 0 chr6 70219080 70219358 -119060196 + AluY SINE Alu 1 293 -18 713 243 138 102 chr6 70219358 70219375 -119060179 + LTR33 LTR ERVL 413 428 -93 2224 111 0 46 chr6 70219375 70219699 -119059855 - AluSg SINE Alu -1 309 1 713 243 138 102 chr6 70219699 70219753 -119059801 + LTR33 LTR ERVL 428 520 -1 1033 246 89 60 chr6 70219753 70219772 -119059782 + L1ME3A LINE L1 5871 5929 -241 273 325 42 17 chr6 70221153 70221273 -119058281 + L2 LINE L2 3149 3271 -1 1931 114 0 62 chr6 70222683 70222991 -119056563 + AluSx SINE Alu 1 289 -23 189 0 0 0 chr6 70222992 70223013 -119056541 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr6 70223248 70223271 -119056283 + AT_rich Low_complexity Low_complexity 1 23 0 1862 137 3 65 chr6 70224774 70225096 -119054458 - AluSx SINE Alu -8 304 3 2197 121 3 0 chr6 70225105 70225412 -119054142 - AluSp SINE Alu -5 308 1 518 87 0 0 chr6 70225808 70225877 -119053677 - Alu SINE Alu -241 69 1 201 74 0 0 chr6 70226148 70226175 -119053379 + (CA)n Simple_repeat Simple_repeat 1 27 0 255 103 0 0 chr6 70227526 70227565 -119051989 + (GA)n Simple_repeat Simple_repeat 2 40 0 24 53 0 0 chr6 70227902 70227940 -119051614 + AT_rich Low_complexity Low_complexity 1 38 0 1981 118 0 4 chr6 70228232 70228538 -119051016 - AluSg SINE Alu 0 305 1 3842 186 36 103 chr6 70228647 70229150 -119050404 - L1MC4a LINE L1 -189 7666 7131 2272 102 0 20 chr6 70229150 70229455 -119050099 - AluSx SINE Alu -10 302 4 3842 186 36 103 chr6 70229455 70230725 -119048829 - L1MC4a LINE L1 -724 7131 6049 288 294 34 54 chr6 70230732 70230936 -119048618 - L2 LINE L2 -855 2459 2260 22 0 0 0 chr6 70231258 70231280 -119048274 + AT_rich Low_complexity Low_complexity 1 22 0 388 258 35 91 chr6 70231452 70231527 -119048027 - L1ME4a LINE L1 0 6121 6043 1832 123 72 4 chr6 70231527 70231803 -119047751 + AluSx SINE Alu 1 295 -17 388 258 35 91 chr6 70231803 70231925 -119047629 - L1ME4a LINE L1 -78 6043 5935 383 236 7 0 chr6 70231925 70232065 -119047489 + (TA)n Simple_repeat Simple_repeat 2 142 0 2274 100 0 7 chr6 70232121 70232420 -119047134 - AluSx SINE Alu -15 297 1 519 323 9 5 chr6 70232420 70232637 -119046917 - L1MC4a LINE L1 -1902 5906 5689 * 37390 91 14 18 chr6 70232636 70238811 -119040743 - L1PA6 LINE L1 0 6154 11 15581 102 13 2 chr6 70238829 70241787 -119037767 - L1PA8 LINE L1 0 6172 3191 391 261 159 0 chr6 70241787 70241925 -119037629 - L1MC4a LINE L1 -416 5705 5546 376 336 15 0 chr6 70242554 70242685 -119036869 + MER94 DNA DNA 2 134 0 2242 130 52 47 chr6 70243735 70244120 -119035434 - MLT1B LTR MaLR -3 387 1 2940 177 32 50 chr6 70245157 70245812 -119033742 + L1MA4 LINE L1 5494 6125 -117 2287 104 3 0 chr6 70245812 70246110 -119033444 + AluSg SINE Alu 2 300 -10 2940 177 32 50 chr6 70246110 70246226 -119033328 + L1MA4 LINE L1 6125 6242 0 415 211 102 8 chr6 70246332 70246460 -119033094 + L1ME4a LINE L1 5982 6121 0 239 314 170 34 chr6 70246544 70246937 -119032617 + L2 LINE L2 2776 3240 -32 2050 134 7 0 chr6 70248283 70248573 -119030981 - AluSx SINE Alu -20 292 1 2314 76 0 17 chr6 70248589 70248920 -119030634 - AluY SINE Alu 0 326 1 362 328 147 0 chr6 70249109 70249225 -119030329 + L2 LINE L2 3140 3272 0 321 143 275 11 chr6 70249300 70249391 -119030163 + L2 LINE L2 3199 3313 0 263 161 18 0 chr6 70249593 70249649 -119029905 + CT-rich Low_complexity Low_complexity 3 59 0 1319 175 44 24 chr6 70249718 70249969 -119029585 - AluJb SINE Alu -19 293 38 282 179 0 0 chr6 70250118 70250174 -119029380 + (TA)n Simple_repeat Simple_repeat 1 56 0 2153 123 7 3 chr6 70250200 70250510 -119029044 - AluSx SINE Alu -1 311 1 514 306 26 34 chr6 70250512 70250780 -119028774 - L1ME3A LINE L1 -231 5939 5674 1784 129 89 11 chr6 70251109 70251389 -119028165 - AluSx SINE Alu -10 302 1 1734 126 60 39 chr6 70251550 70251835 -119027719 + AluSc SINE Alu 1 291 -18 1682 83 0 17 chr6 70251837 70252067 -119027487 + L1P LINE L1 1 226 -5920 2073 152 3 7 chr6 70303918 70304228 -118975326 - AluSx SINE Alu -3 309 1 41413 46 1 5 chr6 70304565 70310728 -118968826 - L1PA4 LINE L1 -2 6153 13 468 282 120 4 chr6 70310914 70311225 -118968329 - MLT1I LTR MaLR 0 409 37 2268 113 0 3 chr6 70311238 70311548 -118968006 + AluSq SINE Alu 5 313 0 264 264 107 8 chr6 70311774 70311895 -118967659 + MLT1I LTR MaLR 280 439 -7 610 307 71 5 chr6 70311898 70312110 -118967444 + MIR SINE MIR 26 251 -11 266 301 87 29 chr6 70312142 70312245 -118967309 + L3 LINE CR1 1437 1545 -32 1653 191 36 8 chr6 70312404 70312761 -118966793 - MLT2C2 LTR ERVL -94 370 4 214 303 53 13 chr6 70314713 70314789 -118964765 + MIR SINE MIR 1 79 -183 181 299 46 35 chr6 70315932 70316019 -118963535 + MIR3 SINE MIR 2 89 -119 1751 190 3 3 chr6 70316044 70316354 -118963200 + AluJb SINE Alu 1 310 -2 486 301 86 75 chr6 70316730 70317102 -118962452 + L2 LINE L2 2857 3236 -77 1976 163 3 0 chr6 70317102 70317409 -118962145 - AluSg SINE Alu -2 308 1 486 301 86 75 chr6 70317409 70317488 -118962066 + L2 LINE L2 3236 3313 0 253 240 0 0 chr6 70317551 70317601 -118961953 - MIR SINE MIR 0 262 213 450 244 32 16 chr6 70317647 70317770 -118961784 - MIR SINE MIR -28 234 110 476 256 133 98 chr6 70317951 70318350 -118961204 + LTR67 LTR ERVL 2 414 -143 901 190 9 75 chr6 70318376 70318602 -118960952 + MIR SINE MIR 21 231 -31 7114 47 35 0 chr6 70318656 70319665 -118959889 - L1PA7 LINE L1 -2 6152 5135 1440 109 76 0 chr6 70319683 70319894 -118959660 + AluSp SINE Alu 83 309 -4 9840 100 6 5 chr6 70319894 70321408 -118958146 - L1P LINE L1 -1000 5146 3632 273 238 0 0 chr6 70323163 70323243 -118956311 + CT-rich Low_complexity Low_complexity 2 81 0 1953 84 0 0 chr6 70324922 70325161 -118954393 + AluSq SINE Alu 1 239 -74 231 114 0 0 chr6 70325168 70325203 -118954351 + (A)n Simple_repeat Simple_repeat 1 35 0 455 271 166 20 chr6 70326183 70326334 -118953220 + MER5B DNA MER1_type 1 173 -5 2361 59 3 13 chr6 70326949 70327252 -118952302 - AluY SINE Alu -11 300 1 201 74 0 0 chr6 70327411 70327438 -118952116 + (CTG)n Simple_repeat Simple_repeat 1 27 0 281 130 169 39 chr6 70327438 70327515 -118952039 + MSTC LTR MaLR 9 95 -333 186 246 136 51 chr6 70327518 70327636 -118951918 - MIR SINE MIR -97 165 38 2076 138 44 5 chr6 70327982 70328367 -118951187 - L1MB8 LINE L1 0 6178 5779 195 284 68 23 chr6 70328447 70328535 -118951019 - MIR SINE MIR -60 148 57 262 324 38 9 chr6 70328549 70328654 -118950900 - L2 LINE L2 -7 3306 3199 1224 111 6 0 chr6 70329529 70329700 -118949854 - AluSp SINE Alu -5 308 137 1548 178 7 25 chr6 70329803 70330084 -118949470 - AluJo SINE Alu -36 276 1 307 274 116 21 chr6 70330832 70330927 -118948627 - MIR SINE MIR -74 188 85 904 180 0 44 chr6 70331109 70331292 -118948262 - FRAM SINE Alu -2 174 1 443 216 54 18 chr6 70331453 70331564 -118947990 + MIR SINE MIR 29 143 -119 2151 119 3 0 chr6 70331651 70331946 -118947608 + AluSp SINE Alu 1 296 -17 803 236 46 19 chr6 70333067 70333326 -118946228 - L1MD2 LINE L1 -11 6348 6083 318 211 118 75 chr6 70333315 70333410 -118946144 - L1MD1 LINE L1 -181 6061 5955 * 2075 140 3 0 chr6 70333410 70333710 -118945844 - AluSc SINE Alu -8 301 1 318 211 118 75 chr6 70333710 70333775 -118945779 - L1MD1 LINE L1 -287 5955 5894 566 193 13 33 chr6 70333780 70333930 -118945624 - L1MD3 LINE L1 -18 7977 7831 * 2948 180 80 50 chr6 70333928 70334665 -118944889 - L1MD2 LINE L1 -212 6147 5386 212 327 63 19 chr6 70334976 70335135 -118944419 - L2 LINE L2 -942 2372 2207 195 231 88 44 chr6 70335380 70335471 -118944083 - L2 LINE L2 -1605 1709 1615 2178 102 7 0 chr6 70335707 70336001 -118943553 - AluSx SINE Alu -14 298 3 261 272 79 53 chr6 70337247 70337361 -118942193 + L2 LINE L2 2737 2853 -461 532 265 209 64 chr6 70337451 70337825 -118941729 + L2 LINE L2 2883 3310 -3 242 247 106 24 chr6 70337955 70338040 -118941514 + MLT1K LTR MaLR 147 238 -350 180 311 118 30 chr6 70338571 70338706 -118940848 - L2 LINE L2 0 3313 3167 384 33 0 100 chr6 70339058 70339118 -118940436 - MER85 DNA T2_type 0 139 86 775 81 121 0 chr6 70339120 70339244 -118940310 - MER85 DNA T2_type 0 139 1 1895 124 0 0 chr6 70340121 70340386 -118939168 - AluSq SINE Alu -48 265 1 416 213 146 10 chr6 70340862 70340978 -118938576 - MIR SINE MIR -61 147 25 355 297 97 7 chr6 70341436 70341581 -118937973 - MER70B LTR ERVL -17 561 404 2391 76 0 10 chr6 70342136 70342440 -118937114 + AluY SINE Alu 1 301 -10 309 260 97 39 chr6 70343427 70343581 -118935973 + L1MDa LINE L1 1254 1416 -5124 848 141 23 0 chr6 70343633 70343761 -118935793 - FLAM_C SINE Alu -2 131 1 296 317 11 27 chr6 70343765 70343948 -118935606 + L1MDa LINE L1 1467 1646 -4884 3181 145 10 2 chr6 70344517 70345014 -118934540 - MER61D LTR ERV1 0 501 1 1260 149 164 7 chr6 70345087 70345135 -118934419 - MER33 DNA MER1_type -2266 319 280 2283 94 0 3 chr6 70345135 70345433 -118934121 + AluSx SINE Alu 16 312 0 1260 149 164 7 chr6 70345433 70345659 -118933895 - MER33 DNA MER1_type -2305 280 2 372 292 109 22 chr6 70345932 70346069 -118933485 + L2 LINE L2 2301 2449 -865 1838 165 3 20 chr6 70348614 70348917 -118930637 - AluJo SINE Alu -14 298 1 1214 199 146 49 chr6 70352242 70352653 -118926901 + MER39 LTR ERV1 257 707 0 239 340 196 21 chr6 70352739 70353204 -118926350 + L2 LINE L2 2188 2733 -581 3074 135 46 4 chr6 70353290 70353815 -118925739 - LTR24B LTR ERV1 -5 571 25 2346 102 0 0 chr6 70354182 70354495 -118925059 - AluSq SINE Alu 0 313 1 4111 150 71 6 chr6 70355016 70355694 -118923860 + MER72 LTR ERV1 1 722 0 527 280 32 32 chr6 70355987 70356176 -118923378 - L2 LINE L2 -3 3310 3122 2127 124 0 23 chr6 70356363 70356669 -118922885 + AluSx SINE Alu 1 299 -13 363 277 0 0 chr6 70356770 70356853 -118922701 - L2 LINE L2 -257 3056 2974 195 333 17 0 chr6 70357011 70357071 -118922483 + MIR3 SINE MIR 125 185 -23 466 78 13 13 chr6 70357105 70357182 -118922372 - L1PB4 LINE L1 0 6156 6080 310 357 117 9 chr6 70358438 70358651 -118920903 - L2 LINE L2 -518 2796 2561 23 33 0 0 chr6 70359615 70359645 -118919909 + AT_rich Low_complexity Low_complexity 1 30 0 300 202 154 58 chr6 70360701 70360805 -118918749 - L1ME4a LINE L1 -1 6120 6007 2157 119 3 0 chr6 70360842 70361136 -118918418 - AluSx SINE Alu -17 295 1 225 65 0 0 chr6 70361143 70361174 -118918380 + (TTG)n Simple_repeat Simple_repeat 2 32 0 544 262 95 41 chr6 70361193 70361487 -118918067 - L1ME4a LINE L1 -219 5902 5593 295 286 0 0 chr6 70361958 70362035 -118917519 + T-rich Low_complexity Low_complexity 4 80 0 54 56 0 0 chr6 70362669 70362758 -118916796 + AT_rich Low_complexity Low_complexity 1 89 0 252 188 35 12 chr6 70362763 70362848 -118916706 + (TA)n Simple_repeat Simple_repeat 1 87 0 309 304 125 55 chr6 70362885 70363174 -118916380 + L2 LINE L2 3005 3313 0 506 316 17 66 chr6 70364601 70364902 -118914652 - L2 LINE L2 -880 2434 2149 2246 121 3 0 chr6 70365492 70365799 -118913755 - AluSx SINE Alu 0 312 5 1958 116 73 0 chr6 70366518 70366793 -118912761 + AluSx SINE Alu 1 295 -17 1872 229 122 40 chr6 70368683 70369256 -118910298 - MLT1E2 LTR MaLR 0 626 7 1004 194 0 28 chr6 70370339 70370550 -118909004 + MER3 DNA MER1_type 5 209 0 28 29 0 0 chr6 70370566 70370601 -118908953 + AT_rich Low_complexity Low_complexity 1 35 0 508 304 80 57 chr6 70371230 70371493 -118908061 + L2 LINE L2 3029 3297 -16 249 108 0 0 chr6 70371493 70371530 -118908024 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 8685 50 6 1 chr6 70371834 70372900 -118906654 - MER11C LTR ERVK 0 1071 1 411 172 17 0 chr6 70373582 70373674 -118905880 - L1ME1 LINE L1 -1 6183 6086 25 0 0 0 chr6 70375350 70375375 -118904179 + AT_rich Low_complexity Low_complexity 1 25 0 926 162 35 53 chr6 70375379 70375434 -118904120 - MER33 DNA MER1_type -2349 236 182 667 207 0 22 chr6 70375434 70375569 -118903985 - FLAM_A SINE Alu -1 132 1 926 162 35 53 chr6 70375569 70375741 -118903813 - MER33 DNA MER1_type -2403 182 13 270 290 74 74 chr6 70376076 70376238 -118903316 - MIR SINE MIR -30 232 71 2381 89 3 9 chr6 70377337 70377652 -118901902 + AluSp SINE Alu 1 313 0 21 0 0 0 chr6 70377916 70377937 -118901617 + AT_rich Low_complexity Low_complexity 1 21 0 206 322 139 26 chr6 70380371 70380486 -118899068 + MIR SINE MIR 17 144 -64 293 310 123 19 chr6 70380592 70380747 -118898807 - MIR SINE MIR -21 241 71 21 36 0 0 chr6 70381080 70381108 -118898446 + AT_rich Low_complexity Low_complexity 1 28 0 1327 236 97 17 chr6 70381502 70381854 -118897700 - MLT1B LTR MaLR 0 390 11 581 213 126 17 chr6 70382451 70382625 -118896929 - L2 LINE L2 0 3313 3121 589 350 107 12 chr6 70382738 70383167 -118896387 + L2 LINE L2 289 758 -2556 608 325 167 7 chr6 70383209 70383825 -118895729 + L2 LINE L2 2599 3313 0 231 364 37 21 chr6 70383832 70384019 -118895535 - L2 LINE L2 -217 3055 2866 2151 125 0 10 chr6 70384278 70384591 -118894963 + AluSx SINE Alu 1 310 -2 245 303 0 61 chr6 70384803 70384902 -118894652 - L2 LINE L2 -1531 1783 1691 3250 186 72 13 chr6 70385150 70385859 -118893695 + L1MD2 LINE L1 5598 6351 -8 327 146 73 0 chr6 70385864 70385960 -118893594 - Charlie5 DNA MER1_type -106 2506 2404 1433 166 39 50 chr6 70386706 70386989 -118892565 - AluJo SINE Alu -19 293 14 1740 188 36 29 chr6 70387291 70387675 -118891879 - MLT1B LTR MaLR 0 390 4 457 214 63 19 chr6 70388012 70388171 -118891383 - L1ME4a LINE L1 -250 5871 5706 303 28 0 0 chr6 70388243 70388279 -118891275 + (TG)n Simple_repeat Simple_repeat 1 36 0 2220 119 0 0 chr6 70388316 70388619 -118890935 + AluSx SINE Alu 1 303 -9 225 163 0 0 chr6 70388854 70388903 -118890651 + (CA)n Simple_repeat Simple_repeat 2 50 0 602 246 8 0 chr6 70388929 70389047 -118890507 - MLT2B1 LTR ERVL -90 430 312 4306 146 36 7 chr6 70389049 70389780 -118889774 + Tigger2 DNA MER2_type 2 753 -1965 992 105 0 0 chr6 70389869 70390002 -118889552 - AluSq/x SINE Alu -180 133 1 1042 155 19 101 chr6 70390004 70390262 -118889292 + Tigger2 DNA MER2_type 2481 2717 -1 897 240 23 70 chr6 70390264 70390564 -118888990 - MLT2B1 LTR ERVL -209 311 26 2260 94 3 23 chr6 70390580 70390888 -118888666 - AluSx SINE Alu -10 302 1 21 57 0 0 chr6 70391180 70391215 -118888339 + AT_rich Low_complexity Low_complexity 1 35 0 3001 89 80 0 chr6 70392336 70392786 -118886768 - LTR19A LTR ERV1 0 486 1 749 261 16 11 chr6 70392963 70393147 -118886407 + L2 LINE L2 3129 3313 0 326 152 0 0 chr6 70393385 70393431 -118886123 + MER5A DNA MER1_type 33 78 -111 256 220 0 0 chr6 70393550 70393600 -118885954 + (TA)n Simple_repeat Simple_repeat 2 51 0 2246 96 0 10 chr6 70393742 70394033 -118885521 - AluSp SINE Alu -25 288 1 37 23 0 0 chr6 70394829 70394873 -118884681 + AT_rich Low_complexity Low_complexity 1 44 0 33 0 0 0 chr6 70395532 70395565 -118883989 + AT_rich Low_complexity Low_complexity 1 33 0 1183 132 132 0 chr6 70395565 70395785 -118883769 - L1PA16 LINE L1 -9 6157 5909 636 162 155 47 chr6 70396252 70396400 -118883154 + MER5A DNA MER1_type 26 189 0 1007 166 36 20 chr6 70396415 70396618 -118882936 - MSTC LTR MaLR 0 428 216 322 304 54 9 chr6 70396895 70397007 -118882547 + L2 LINE L2 3196 3312 -1 333 325 25 8 chr6 70397286 70397406 -118882148 - MIR SINE MIR -18 244 123 242 311 161 33 chr6 70397536 70397716 -118881838 - MIR SINE MIR -37 225 23 2177 82 4 0 chr6 70398132 70398402 -118881152 + AluSp SINE Alu 13 283 -30 23 0 0 0 chr6 70399424 70399447 -118880107 + AT_rich Low_complexity Low_complexity 1 23 0 793 241 60 38 chr6 70399899 70400164 -118879390 - L2 LINE L2 -1 3312 3042 223 255 170 19 chr6 70400271 70400377 -118879177 - MIR SINE MIR -116 146 25 2082 137 0 0 chr6 70403590 70403883 -118875671 - AluSx SINE Alu -19 293 1 6176 97 20 1 chr6 70404337 70406092 -118873462 + L1PA14 LINE L1 4382 6161 0 547 279 87 37 chr6 70406330 70406560 -118872994 + MIR SINE MIR 3 248 -14 352 270 61 17 chr6 70406606 70406721 -118872833 - L2 LINE L2 -166 3106 2987 1805 162 24 10 chr6 70407157 70407453 -118872101 + AluJo SINE Alu 1 300 -12 14159 127 28 36 chr6 70407951 70409525 -118870029 - Tigger1 DNA MER2_type -2 2416 867 2083 116 3 7 chr6 70409525 70409835 -118869719 - AluSx SINE Alu -3 309 1 14159 127 28 36 chr6 70409835 70410688 -118868866 - Tigger1 DNA MER2_type -1551 867 9 966 219 30 104 chr6 70410743 70411071 -118868483 + L2 LINE L2 2155 2458 -856 42042 41 23 3 chr6 70411088 70417118 -118862436 - L1PA3 LINE L1 -1 6154 2 416 230 161 0 chr6 70417129 70417290 -118862264 + L2 LINE L2 2461 2647 -667 1921 112 7 62 chr6 70417990 70418294 -118861260 - AluSx SINE Alu -11 301 15 892 192 96 29 chr6 70419148 70419356 -118860198 - MER58A DNA MER1_type -1 223 2 1359 199 35 28 chr6 70419692 70420114 -118859440 - MLT2B1 LTR ERVL -53 467 1 398 250 65 84 chr6 70420129 70420632 -118858922 - L1MC5 LINE L1 -233 7728 7261 202 366 53 8 chr6 70420804 70420935 -118858619 - MIR SINE MIR -79 183 47 1048 225 28 40 chr6 70421137 70421386 -118858168 + MIR SINE MIR 1 246 -16 22 0 0 0 chr6 70421612 70421634 -118857920 + AT_rich Low_complexity Low_complexity 1 22 0 1443 139 56 4 chr6 70421638 70421889 -118857665 + Tigger5 DNA MER2_type 2059 2322 -1 306 305 73 30 chr6 70423444 70423608 -118855946 + MIR SINE MIR 92 262 0 2156 101 11 0 chr6 70424068 70424365 -118855189 - AluSc SINE Alu 0 300 1 260 135 162 40 chr6 70424957 70425031 -118854523 + MIR SINE MIR 180 262 0 2139 112 6 10 chr6 70425697 70426010 -118853544 + AluSx SINE Alu 1 312 0 704 207 0 89 chr6 70427277 70427456 -118852098 - FRAM SINE Alu -13 163 1 23 54 0 0 chr6 70427764 70427801 -118851753 + AT_rich Low_complexity Low_complexity 1 37 0 498 127 21 29 chr6 70428314 70428408 -118851146 + MER51A LTR ERV1 1 91 -286 905 245 88 36 chr6 70428448 70428823 -118850731 + MER51A LTR ERV1 257 640 0 288 259 0 25 chr6 70429163 70429244 -118850310 - MER116 DNA Mariner -1 79 1 402 254 16 16 chr6 70429354 70429476 -118850078 + L2 LINE L2 2244 2365 -949 2099 122 3 0 chr6 70430116 70430410 -118849144 - AluSq SINE Alu -18 295 1 446 329 80 14 chr6 70431516 70431729 -118847825 + MIR SINE MIR 6 232 -30 2379 90 3 0 chr6 70431731 70432032 -118847522 - AluSx SINE Alu -10 302 1 3936 201 80 32 chr6 70432038 70433068 -118846486 - L1MC4a LINE L1 0 7808 6730 33 43 0 0 chr6 70433966 70434013 -118845541 + AT_rich Low_complexity Low_complexity 1 47 0 553 178 20 125 chr6 70434089 70434241 -118845313 + AluJo SINE Alu 2 137 -175 1210 202 129 67 chr6 70434308 70434805 -118844749 - MER39 LTR ERV1 0 707 2 308 272 0 12 chr6 70435812 70435893 -118843661 - L2 LINE L2 -5 3267 3188 1018 158 64 6 chr6 70435935 70436106 -118843448 - AluJo SINE Alu -128 184 4 188 286 107 0 chr6 70436158 70436242 -118843312 + MIR3 SINE MIR 110 202 -6 23 33 0 0 chr6 70436741 70436771 -118842783 + AT_rich Low_complexity Low_complexity 1 30 0 3245 31 0 0 chr6 70436771 70437152 -118842402 - L1PA3 LINE L1 -5 6150 5770 225 0 0 0 chr6 70437153 70437178 -118842376 + (TTA)n Simple_repeat Simple_repeat 3 27 0 4954 37 5 18 chr6 70437178 70437493 -118842061 - L1PA3 LINE L1 -18 6137 5832 2602 32 7 3 chr6 70437493 70437801 -118841753 - AluY SINE Alu -2 309 1 4954 37 5 18 chr6 70437801 70438101 -118841453 - L1PA3 LINE L1 -323 5832 5530 276 337 79 12 chr6 70438124 70438247 -118841307 + MIR SINE MIR 41 169 -68 273 29 0 0 chr6 70438343 70438377 -118841177 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 216 264 0 97 chr6 70439148 70439220 -118840334 - MIR SINE MIR -92 116 52 1470 199 42 102 chr6 70439638 70440110 -118839444 - MER31B LTR ERV1 -22 444 1 393 219 61 0 chr6 70440110 70440224 -118839330 - MER31B-int LTR ERV1 -20 4916 4796 358 316 61 50 chr6 70441488 70441683 -118837871 - MER31B-int LTR ERV1 -4093 2708 2517 2337 103 0 0 chr6 70441683 70441983 -118837571 + AluY SINE Alu 1 300 -11 358 316 61 50 chr6 70441983 70442168 -118837386 - MER31B-int LTR ERV1 -4284 2517 179 338 333 7 14 chr6 70443444 70443588 -118835966 - MER31B-int LTR ERV1 -5429 1372 1230 823 249 80 31 chr6 70443951 70444240 -118835314 - MER31B-int LTR ERV1 -4435 501 199 483 227 51 141 chr6 70444277 70444533 -118835021 - MER31B-int LTR ERV1 -4669 267 35 1483 169 56 93 chr6 70444602 70445086 -118834468 - MER31B LTR ERV1 0 466 1 566 330 48 0 chr6 70445089 70445277 -118834277 - MIR SINE MIR -32 230 34 3955 143 22 9 chr6 70445926 70446606 -118832948 + L1PA16 LINE L1 5465 6153 -13 2193 117 10 0 chr6 70446796 70447095 -118832459 + AluSx SINE Alu 1 302 -10 2220 96 31 0 chr6 70447597 70447889 -118831665 - AluSq SINE Alu -12 301 1 2177 196 133 22 chr6 70448567 70449592 -118829962 + L1ME2 LINE L1 4600 5743 -421 2806 224 101 20 chr6 70449618 70450372 -118829182 - MER21B LTR ERV1 -30 833 19 353 227 0 103 chr6 70450397 70450494 -118829060 - MER21B LTR ERV1 -776 87 1 1837 227 5 25 chr6 70450495 70450927 -118828627 + L1ME2 LINE L1 5741 6163 -1 312 351 49 79 chr6 70451294 70451622 -118827932 - L2 LINE L2 -2 3270 2953 333 297 170 24 chr6 70451779 70451991 -118827563 - MIR SINE MIR 0 262 20 466 174 0 12 chr6 70452887 70453082 -118826472 + AluJo SINE Alu 1 223 -89 715 205 31 46 chr6 70453082 70453277 -118826277 + MER21B LTR ERV1 526 717 -146 507 201 253 13 chr6 70453799 70453953 -118825601 - AluSc SINE Alu -16 293 103 243 296 128 17 chr6 70453976 70454148 -118825406 + MIR SINE MIR 66 256 -6 1773 166 7 0 chr6 70454306 70454632 -118824922 - AluJo SINE Alu 0 328 1 1964 115 35 7 chr6 70456036 70456323 -118823231 - AluSq SINE Alu -18 295 1 265 265 195 26 chr6 70456338 70456483 -118823071 + MER5A DNA MER1_type 2 186 -3 426 293 133 36 chr6 70456493 70456742 -118822812 - L3 LINE CR1 -572 1005 733 1163 164 27 5 chr6 70456815 70457034 -118822520 - L1MC1 LINE L1 -6 6327 6104 1295 143 92 7 chr6 70457085 70457173 -118822381 - L1MCa LINE L1 -5129 1297 1218 189 0 0 0 chr6 70457173 70457194 -118822360 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1295 143 92 7 chr6 70457194 70457378 -118822176 - L1MCa LINE L1 -5208 1218 1002 * 6817 198 17 26 chr6 70457363 70457998 -118821556 - L1 LINE L1 -1193 4953 4314 1486 126 148 38 chr6 70457998 70458261 -118821293 + AluSx SINE Alu 1 292 -20 6817 198 17 26 chr6 70458261 70458657 -118820897 - L1 LINE L1 -1832 4314 3916 2395 78 0 0 chr6 70458657 70458953 -118820601 - AluY SINE Alu -15 296 1 6817 198 17 26 chr6 70458953 70459518 -118820036 - L1 LINE L1 -2230 3916 3371 210 325 107 75 chr6 70461254 70461506 -118818048 - L2 LINE L2 -33 3239 2980 226 318 9 64 chr6 70461896 70462006 -118817548 - MIR3 SINE MIR -101 107 4 193 388 51 15 chr6 70462114 70462387 -118817167 - L2 LINE L2 -1212 2102 1820 1469 203 34 10 chr6 70462418 70462713 -118816841 + AluJb SINE Alu 1 302 -10 257 409 40 11 chr6 70462928 70463104 -118816450 + L2 LINE L2 3089 3269 -3 2139 110 3 7 chr6 70464048 70464347 -118815207 - AluSx SINE Alu -14 298 1 989 249 43 4 chr6 70464623 70464964 -118814590 + L1ME1 LINE L1 2415 2785 -3361 403 233 197 5 chr6 70464974 70465167 -118814387 + L1ME1 LINE L1 4137 4366 -1780 2300 211 82 42 chr6 70465300 70466146 -118813408 + L1ME1 LINE L1 4691 5607 -559 6165 7 0 3 chr6 70466146 70466842 -118812712 + L1PA2 LINE L1 5462 6155 0 2300 211 82 42 chr6 70466842 70467240 -118812314 + L1ME1 LINE L1 5607 5987 -179 1845 147 7 23 chr6 70467458 70467764 -118811790 - AluJo SINE Alu 0 312 12 332 340 63 43 chr6 70467821 70468074 -118811480 + HAL1 LINE L1 2245 2502 -5 665 216 34 15 chr6 70468240 70468514 -118811040 - LTR40b LTR ERVL 0 462 206 23 0 0 0 chr6 70468515 70468538 -118811016 + AT_rich Low_complexity Low_complexity 1 23 0 812 106 0 0 chr6 70468538 70468642 -118810912 - AluSp/q SINE Alu -24 289 186 243 226 57 0 chr6 70468648 70468701 -118810853 - LTR40a LTR ERVL -362 157 102 793 122 89 0 chr6 70468702 70468825 -118810729 + MER1B DNA MER1_type 1 134 -163 2060 102 43 23 chr6 70468835 70469138 -118810416 + MER1B DNA MER1_type 31 339 0 352 314 29 10 chr6 70469139 70469241 -118810313 - LTR40a LTR ERVL -412 107 4 2251 79 11 0 chr6 70469347 70469626 -118809928 + AluY SINE Alu 1 282 -29 432 0 0 0 chr6 70469626 70469674 -118809880 + (TA)n Simple_repeat Simple_repeat 2 49 0 333 0 0 0 chr6 70469673 70469710 -118809844 + (TG)n Simple_repeat Simple_repeat 2 38 0 * 1779 161 6 13 chr6 70469970 70470281 -118809273 + AluJb SINE Alu 1 309 -3 1507 192 25 4 chr6 70470454 70470730 -118808824 + AluJo SINE Alu 1 282 -30 475 294 124 34 chr6 70471044 70471221 -118808333 - MIR SINE MIR -24 238 46 1807 155 143 0 chr6 70471484 70471870 -118807684 - L1MB5 LINE L1 0 6410 5970 1816 159 99 55 chr6 70471870 70472285 -118807269 - MLT1C LTR MaLR -34 433 1 3273 177 43 12 chr6 70472285 70473157 -118806397 - L1MB5 LINE L1 -711 5703 4809 589 261 54 0 chr6 70473175 70473359 -118806195 + L1PBa LINE L1 6 199 -6664 * 8240 162 55 5 chr6 70473356 70474754 -118804800 + L1PBa LINE L1 652 2372 -4490 2182 124 0 0 chr6 70474754 70475052 -118804502 + AluY SINE Alu 1 298 -13 8240 162 55 5 chr6 70475052 70475805 -118803749 + L1PBa LINE L1 2372 3086 -3776 1007 223 58 21 chr6 70475834 70475931 -118803623 - L1MB5 LINE L1 -4036 2348 2256 824 217 136 90 chr6 70475931 70476277 -118803277 - MLT1A1 LTR MaLR -3 362 1 1007 223 58 21 chr6 70476277 70476777 -118802777 - L1MB5 LINE L1 -4128 2256 1650 1200 80 0 0 chr6 70476782 70476932 -118802622 - AluSg/x SINE Alu -5 307 158 824 147 80 31 chr6 70476962 70477186 -118802368 + Charlie5 DNA MER1_type 2380 2614 0 223 215 62 15 chr6 70479062 70479127 -118800427 + CT-rich Low_complexity Low_complexity 4 71 0 256 346 58 0 chr6 70479383 70479487 -118800067 - L2 LINE L2 -221 3051 2942 * 463 303 123 41 chr6 70479485 70479623 -118799931 - L2 LINE L2 0 3313 3188 2084 129 36 41 chr6 70479623 70479987 -118799567 - THE1B LTR MaLR 0 364 3 463 303 123 41 chr6 70479987 70480092 -118799462 - L2 LINE L2 -125 3188 3050 1985 154 0 3 chr6 70481462 70481761 -118797793 - AluJb SINE Alu -14 298 1 1934 157 10 0 chr6 70481834 70482127 -118797427 + AluSx SINE Alu 1 296 -16 2267 115 0 0 chr6 70482197 70482502 -118797052 - AluSg SINE Alu -2 308 4 2138 146 26 13 chr6 70483305 70483682 -118795872 - L1PA16 LINE L1 -5 6161 5780 644 316 70 4 chr6 70484404 70484648 -118794906 + L2 LINE L2 2538 2797 -517 25 0 0 0 chr6 70485191 70485216 -118794338 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr6 70485326 70485356 -118794198 + AT_rich Low_complexity Low_complexity 1 30 0 604 303 108 46 chr6 70487071 70487290 -118792264 - LTR67 LTR ERVL -5 552 348 1056 254 0 5 chr6 70487290 70487514 -118792040 - MER58A DNA MER1_type 0 224 2 604 303 108 46 chr6 70487514 70487729 -118791825 - LTR67 LTR ERVL -209 348 91 235 254 30 0 chr6 70487975 70488042 -118791512 - Charlie8 DNA MER1_type -2348 69 1 219 154 0 0 chr6 70488352 70488391 -118791163 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1504 125 165 131 chr6 70488419 70488747 -118790807 - Charlie3 DNA MER1_type 0 2712 1 415 350 85 22 chr6 70488748 70488971 -118790583 - MIR SINE MIR -25 237 1 26 64 0 0 chr6 70489772 70489819 -118789735 + AT_rich Low_complexity Low_complexity 1 47 0 703 248 31 44 chr6 70490574 70490800 -118788754 + L2 LINE L2 2587 2809 -505 30788 98 11 14 chr6 70491549 70497239 -118782315 + L1PA7 LINE L1 778 6464 -5 278 233 70 23 chr6 70497581 70497667 -118781887 - MIR SINE MIR -56 206 117 343 378 81 14 chr6 70497923 70498071 -118781483 + MIR3 SINE MIR 38 195 -13 24 0 0 0 chr6 70498255 70498279 -118781275 + AT_rich Low_complexity Low_complexity 1 24 0 205 213 0 21 chr6 70499171 70499218 -118780336 - L2 LINE L2 -5 3308 3263 358 217 96 0 chr6 70499762 70499845 -118779709 - L2 LINE L2 -13 3300 3210 231 36 0 0 chr6 70499867 70499895 -118779659 + (CA)n Simple_repeat Simple_repeat 1 28 0 1404 204 35 14 chr6 70500740 70501025 -118778529 - AluJb SINE Alu -11 291 1 519 305 164 11 chr6 70505181 70505535 -118774019 + L2 LINE L2 2110 2517 -797 763 170 115 60 chr6 70505556 70505738 -118773816 + MER20 DNA MER1_type 1 192 -27 304 326 62 105 chr6 70505990 70506523 -118773031 + L2 LINE L2 2804 3313 0 294 312 83 10 chr6 70506586 70506769 -118772785 + MIR SINE MIR 50 241 -21 1553 179 33 0 chr6 70507322 70507595 -118771959 + AluJo SINE Alu 1 282 -30 685 217 30 12 chr6 70507787 70507953 -118771601 + MIR SINE MIR 94 262 0 4537 56 0 7 chr6 70508196 70508770 -118770784 + L1PA6 LINE L1 5585 6154 0 671 216 62 34 chr6 70510018 70510226 -118769328 - L1ME3A LINE L1 -6 6164 5951 1333 289 14 3 chr6 70510226 70510583 -118768971 - L1PA13 LINE L1 -6287 500 140 968 147 7 0 chr6 70510595 70510762 -118768792 - AluSp SINE Alu 0 312 145 321 284 12 68 chr6 70510765 70510927 -118768627 - L1PA13 LINE L1 -6634 153 1 42 48 0 0 chr6 70511002 70511065 -118768489 + AT_rich Low_complexity Low_complexity 1 63 0 618 261 81 52 chr6 70511092 70511612 -118767942 - L1MCa LINE L1 -3987 2600 2066 518 282 17 0 chr6 70511636 70511846 -118767708 - L1MCa LINE L1 -4572 1834 1686 1283 204 14 14 chr6 70511848 70512132 -118767422 + L1MB2 LINE L1 5738 6021 -150 1513 225 23 26 chr6 70512134 70512485 -118767069 + MLT1A1 LTR MaLR 4 353 -12 749 182 7 0 chr6 70512493 70512636 -118766918 + L1MB2 LINE L1 6019 6162 -9 402 285 102 12 chr6 70512645 70512968 -118766586 - L1MCa LINE L1 -4654 1752 1401 1177 242 126 47 chr6 70513047 70513452 -118766102 + LTR40a LTR ERVL 83 519 0 429 243 22 44 chr6 70513455 70513636 -118765918 - L1MCa LINE L1 -5114 1295 1119 384 280 56 0 chr6 70514284 70514391 -118765163 - MER81 DNA DNA -1 113 1 730 281 100 71 chr6 70514511 70514920 -118764634 + L2 LINE L2 2893 3313 0 1007 222 126 41 chr6 70515093 70515458 -118764096 + MSTD LTR MaLR 1 396 0 386 315 122 15 chr6 70516043 70516240 -118763314 + L2 LINE L2 2419 2636 -678 970 249 19 5 chr6 70516401 70516614 -118762940 + MER58A DNA MER1_type 9 224 0 351 244 236 36 chr6 70517085 70517310 -118762244 + L2 LINE L2 2196 2465 -849 2528 90 63 8 chr6 70517354 70517733 -118761821 + MLT2A1 LTR ERVL 1 400 -44 305 258 0 43 chr6 70517737 70517830 -118761724 - L1MC4 LINE L1 -1339 6703 6615 210 265 0 0 chr6 70517834 70517902 -118761652 + (TA)n Simple_repeat Simple_repeat 1 68 0 255 184 40 40 chr6 70517902 70517978 -118761576 - LTR38-int LTR ERV1 -355 1431 1356 261 154 0 0 chr6 70517978 70518017 -118761537 + (CATA)n Simple_repeat Simple_repeat 1 39 0 592 255 8 15 chr6 70518024 70518284 -118761270 + (CATATA)n Simple_repeat Simple_repeat 1 257 0 266 217 33 33 chr6 70518291 70518411 -118761143 + (CATG)n Simple_repeat Simple_repeat 4 123 0 253 256 73 0 chr6 70518419 70518501 -118761053 - L1MC4 LINE L1 -1339 6703 6616 * 262 273 23 0 chr6 70518473 70518561 -118760993 - L1MC4 LINE L1 -1339 6703 6614 15790 76 14 0 chr6 70518579 70520613 -118758941 + HERVL-A1 LTR ERVL 3593 5654 0 2693 80 44 13 chr6 70520615 70521005 -118758549 + MLT2A1 LTR ERVL 3 404 -40 731 124 31 0 chr6 70521005 70521327 -118758227 + (TA)n Simple_repeat Simple_repeat 1 332 0 29 47 0 0 chr6 70521329 70521372 -118758182 + AT_rich Low_complexity Low_complexity 1 43 0 598 143 26 14 chr6 70521372 70521868 -118757686 + (TA)n Simple_repeat Simple_repeat 1 501 0 315 194 20 92 chr6 70521877 70521975 -118757579 + L1MC4 LINE L1 6613 6703 -1339 376 152 9 9 chr6 70521980 70522085 -118757469 + (TA)n Simple_repeat Simple_repeat 2 106 0 380 125 0 16 chr6 70522085 70522149 -118757405 + HERVL-A2 LTR ERVL 5592 5654 0 446 61 2 2 chr6 70522149 70522216 -118757338 + MLT2A2 LTR ERVL 1 57 -396 278 94 75 38 chr6 70522225 70522278 -118757276 + MLT2A2 LTR ERVL 399 453 0 1584 259 156 24 chr6 70522288 70522941 -118756613 + L2 LINE L2 2524 3276 -37 2087 96 21 17 chr6 70522941 70523232 -118756322 - AluSg1 SINE Alu -17 292 1 1584 259 156 24 chr6 70523232 70523276 -118756278 + L2 LINE L2 3276 3313 0 301 233 0 14 chr6 70523275 70523348 -118756206 - MIR SINE MIR -19 243 172 * 360 271 78 8 chr6 70523690 70523819 -118755735 - LTR33 LTR ERVL -57 464 327 1178 284 46 8 chr6 70523943 70524309 -118755245 + LTR16C LTR ERVL 80 459 -32 2004 136 17 0 chr6 70524309 70524610 -118754944 + AluSx SINE Alu 1 306 -6 215 328 67 37 chr6 70526429 70526563 -118752991 + MIR SINE MIR 34 171 -91 196 326 69 66 chr6 70527247 70527609 -118751945 + L2 LINE L2 2615 2977 -337 1735 185 28 0 chr6 70527778 70528065 -118751489 - AluJb SINE Alu -16 296 2 416 277 56 56 chr6 70528389 70528584 -118750970 - MIR3 SINE MIR -11 197 3 321 89 0 0 chr6 70528936 70528981 -118750573 + (TG)n Simple_repeat Simple_repeat 2 46 0 2044 131 7 3 chr6 70530160 70530465 -118749089 - AluSx SINE Alu -4 308 3 1367 223 104 52 chr6 70530586 70531066 -118748488 + MLT1D LTR MaLR 1 505 0 968 216 10 19 chr6 70531106 70531314 -118748240 - AluJb SINE Alu -19 293 88 404 198 19 19 chr6 70531317 70531423 -118748131 - Charlie2 DNA MER1_type -36 2826 2721 1690 229 26 49 chr6 70531449 70531654 -118747900 + L1M4c LINE L1 2048 2256 -4593 2439 80 0 3 chr6 70531654 70531955 -118747599 + AluY SINE Alu 1 300 -11 1690 229 26 49 chr6 70531955 70532318 -118747236 + L1M4c LINE L1 2256 2603 -4246 6621 205 50 14 chr6 70532349 70533415 -118746139 + L1M4c LINE L1 2809 3970 -2878 2748 139 82 0 chr6 70533415 70533889 -118745665 + MER75 DNA T2_type 2 514 0 6621 205 50 14 chr6 70533889 70534508 -118745046 + L1M4c LINE L1 3970 4565 -2283 24679 114 13 26 chr6 70534508 70536964 -118742590 + L1PA7 LINE L1 2 2489 -3665 252 0 0 0 chr6 70536964 70536992 -118742562 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 24679 114 13 26 chr6 70536992 70540819 -118738735 + L1PA7 LINE L1 2489 6154 0 24 67 0 0 chr6 70540822 70540867 -118738687 + AT_rich Low_complexity Low_complexity 1 45 0 4705 168 27 31 chr6 70540873 70541973 -118737581 + L1M4c LINE L1 4552 5647 -1201 575 174 7 90 chr6 70541973 70542128 -118737426 + L1MA8 LINE L1 5074 5215 -1167 * 3451 163 85 38 chr6 70542127 70542502 -118737052 + L1PA15-16 LINE L1 3 359 -6490 2060 147 0 6 chr6 70542502 70542816 -118736738 - AluSx SINE Alu 0 312 1 3451 163 85 38 chr6 70542816 70543159 -118736395 + L1PA15-16 LINE L1 359 755 -6094 1845 165 127 41 chr6 70543159 70543553 -118736001 - MSTA LTR MaLR 0 428 1 7885 165 82 14 chr6 70543553 70545098 -118734456 - MSTA-int LTR MaLR 0 1651 1 2055 171 111 5 chr6 70545098 70545485 -118734069 - MSTA LTR MaLR 0 428 1 1231 256 34 50 chr6 70545496 70545817 -118733737 + L1PA15-16 LINE L1 761 1076 -5773 4730 143 56 27 chr6 70545820 70547000 -118732554 + L1PA16 LINE L1 4949 6165 -1 4777 162 51 6 chr6 70547012 70548266 -118731288 + L1MA8 LINE L1 5216 6523 -4 1465 226 158 16 chr6 70548307 70549080 -118730474 - Charlie2b DNA MER1_type -167 2615 1813 603 173 91 0 chr6 70549084 70549194 -118730360 - AluJb SINE Alu -11 301 182 234 232 0 0 chr6 70549206 70549262 -118730292 - Charlie2b DNA MER1_type -1061 1801 1666 279 71 0 0 chr6 70549289 70549331 -118730223 + (A)n Simple_repeat Simple_repeat 1 42 0 3518 223 79 42 chr6 70549353 70550503 -118729051 - Charlie2b DNA MER1_type -1137 1645 453 781 273 60 23 chr6 70551047 70551395 -118728159 - Charlie2b DNA MER1_type -2429 433 73 1108 312 51 62 chr6 70551570 70552085 -118727469 + L2 LINE L2 2015 2519 -795 2229 124 16 0 chr6 70552085 70552392 -118727162 - AluSx SINE Alu 0 312 1 1108 312 51 62 chr6 70552392 70552686 -118726868 + L2 LINE L2 2519 2815 -499 706 234 15 5 chr6 70553240 70553437 -118726117 - L1ME LINE L1 -317 5804 5606 487 183 8 71 chr6 70553595 70553721 -118725833 + MER58B DNA MER1_type 219 336 -5 2156 133 7 0 chr6 70553955 70554305 -118725249 - AluSx SINE Alu 0 352 1 3344 288 62 25 chr6 70554318 70555748 -118723806 - L2 LINE L2 0 3313 1825 20878 83 6 1 chr6 70555750 70558698 -118720856 + L1P LINE L1 1 2965 -3181 2203 101 3 3 chr6 70558816 70559113 -118720441 - AluSx SINE Alu -15 297 1 3583 202 80 33 chr6 70559119 70560150 -118719404 - L1MC4a LINE L1 0 7808 6730 320 291 51 76 chr6 70560829 70561066 -118718488 + L1 LINE L1 2257 2487 -3659 479 204 31 0 chr6 70561205 70561303 -118718251 + AluJo SINE Alu 37 137 -175 1102 203 129 68 chr6 70561370 70561867 -118717687 - MER39 LTR ERV1 0 707 2 308 272 0 12 chr6 70562875 70562956 -118716598 - L2 LINE L2 -5 3267 3188 263 161 18 18 chr6 70562998 70563054 -118716500 - AluSp SINE Alu -119 184 129 22 0 0 0 chr6 70563443 70563465 -118716089 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr6 70563467 70563489 -118716065 + (TTA)n Simple_repeat Simple_repeat 3 24 0 5101 29 0 22 chr6 70563489 70564111 -118715443 - L1PA3 LINE L1 -18 6137 5530 293 334 89 16 chr6 70564125 70564257 -118715297 + MIR SINE MIR 33 169 -66 258 56 0 0 chr6 70564356 70564392 -118715162 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 218 264 0 97 chr6 70565168 70565240 -118714314 - MIR SINE MIR -92 116 52 1277 206 42 102 chr6 70565658 70566130 -118713424 - MER31B LTR ERV1 -22 444 1 414 193 73 0 chr6 70566134 70566243 -118713311 - MER31B-int LTR ERV1 -24 4912 4796 287 349 74 0 chr6 70567502 70567651 -118711903 - MER31B-int LTR ERV1 -4093 2708 2549 2418 88 0 0 chr6 70567696 70567992 -118711562 + AluY SINE Alu 1 296 -15 276 340 7 14 chr6 70569450 70569594 -118709960 - MER31B-int LTR ERV1 -5429 1372 1230 734 211 55 28 chr6 70570032 70570250 -118709304 - MER31B-int LTR ERV1 -4514 422 199 394 227 51 141 chr6 70570287 70570543 -118709011 - MER31B-int LTR ERV1 -4669 267 35 1452 168 58 93 chr6 70570612 70571095 -118708459 - MER31B LTR ERV1 0 466 1 605 319 47 0 chr6 70571095 70571286 -118708268 - MIR SINE MIR -29 233 34 4039 141 21 7 chr6 70571936 70572616 -118706938 + L1PA16 LINE L1 5465 6153 -13 2206 117 10 0 chr6 70572806 70573105 -118706449 + AluSx SINE Alu 1 302 -10 403 258 113 26 chr6 70573249 70573400 -118706154 - L2 LINE L2 -613 2701 2538 2267 123 32 13 chr6 70574122 70574497 -118705057 + L1PA16 LINE L1 5780 6161 -5 2239 113 7 0 chr6 70575299 70575601 -118703953 + AluSg SINE Alu 5 308 -2 6543 26 0 0 chr6 70575605 70576411 -118703143 - L1P LINE L1 -1337 4809 4004 1544 197 7 20 chr6 70576649 70576944 -118702610 - AluJo SINE Alu -21 291 1 483 298 217 6 chr6 70581103 70581449 -118698105 + L2 LINE L2 2110 2528 -786 704 171 116 61 chr6 70581469 70581650 -118697904 + MER20 DNA MER1_type 2 192 -27 250 328 76 29 chr6 70581902 70582140 -118697414 + L2 LINE L2 2804 3052 -220 265 315 7 107 chr6 70582321 70582470 -118697084 + L2 LINE L2 3139 3272 0 336 312 86 5 chr6 70582516 70582716 -118696838 + MIR SINE MIR 28 241 -21 1598 172 33 0 chr6 70583269 70583542 -118696012 + AluJo SINE Alu 1 282 -30 688 211 30 12 chr6 70583734 70583900 -118695654 + MIR SINE MIR 94 262 0 4465 61 2 5 chr6 70584143 70584715 -118694839 + L1PA6 LINE L1 5585 6154 0 642 204 63 34 chr6 70585961 70586167 -118693387 - L1ME3A LINE L1 -6 6164 5953 1178 296 14 3 chr6 70586169 70586521 -118693033 - L1PA13 LINE L1 -6287 500 145 956 151 7 0 chr6 70586534 70586706 -118692848 - AluSp SINE Alu 0 317 145 295 278 12 68 chr6 70586709 70586871 -118692683 - L1PA13 LINE L1 -6634 153 1 39 60 0 0 chr6 70586946 70587013 -118692541 + AT_rich Low_complexity Low_complexity 1 67 0 566 255 104 33 chr6 70587025 70587518 -118692036 - L1MCa LINE L1 -3828 2600 2088 476 228 144 20 chr6 70587592 70587794 -118691760 - L1MCa LINE L1 -4438 1968 1686 1159 188 8 8 chr6 70587836 70588076 -118691478 + L1MB2 LINE L1 5782 6021 -150 1306 233 23 28 chr6 70588078 70588430 -118691124 + MLT1A1 LTR MaLR 4 353 -12 696 189 7 0 chr6 70588438 70588581 -118690973 + L1MB2 LINE L1 6019 6162 -9 359 276 105 19 chr6 70588591 70588906 -118690648 - L1MCa LINE L1 -4654 1752 1411 1086 244 123 47 chr6 70588993 70589399 -118690155 + LTR40a LTR ERVL 83 519 0 375 266 25 19 chr6 70589402 70589560 -118689994 - L1MCa LINE L1 -5114 1295 1137 403 260 48 0 chr6 70589970 70590074 -118689480 - MER81 DNA DNA -5 109 1 671 288 101 62 chr6 70590235 70590603 -118688951 + L2 LINE L2 2932 3313 0 931 225 132 47 chr6 70590776 70591141 -118688413 + MSTD LTR MaLR 1 396 0 309 350 67 6 chr6 70591756 70591936 -118687618 + L2 LINE L2 2459 2649 -665 874 239 20 0 chr6 70592083 70592280 -118687274 + MER58A DNA MER1_type 9 209 -15 195 253 0 80 chr6 70594016 70594091 -118685463 + L2 LINE L2 525 593 -2721 2351 33 7 3 chr6 70595186 70595493 -118684061 - L1P LINE L1 -2242 3904 3597 7856 14 2 0 chr6 70595493 70596832 -118682722 + L1PA2 LINE L1 4815 6155 0 1831 174 4 0 chr6 70597101 70597382 -118682172 - AluSx SINE Alu -30 282 1 2060 148 0 3 chr6 70597455 70597760 -118681794 + AluJb SINE Alu 1 304 -8 240 275 37 83 chr6 70610882 70610991 -118668563 - MIR3 SINE MIR -101 107 4 1565 183 35 10 chr6 70611403 70611692 -118667862 + AluJb SINE Alu 1 296 -16 277 403 40 11 chr6 70611902 70612078 -118667476 + L2 LINE L2 3089 3269 -3 2192 113 3 7 chr6 70613024 70613326 -118666228 - AluSx SINE Alu -11 301 1 978 247 38 3 chr6 70613602 70613944 -118665610 + L1ME1 LINE L1 2415 2785 -3361 330 244 197 5 chr6 70613954 70614147 -118665407 + L1ME1 LINE L1 4137 4366 -1780 2212 216 71 37 chr6 70614277 70615475 -118664079 + L1ME1 LINE L1 4691 5927 -239 1881 147 7 23 chr6 70615732 70616038 -118663516 - AluJo SINE Alu 0 312 12 338 325 75 52 chr6 70616094 70616346 -118663208 + HAL1 LINE L1 2245 2502 -5 944 191 166 36 chr6 70616512 70616790 -118662764 - LTR40b LTR ERVL 0 462 149 25 0 0 0 chr6 70616790 70616815 -118662739 + AT_rich Low_complexity Low_complexity 1 25 0 856 85 0 0 chr6 70616815 70616921 -118662633 - AluSp/q SINE Alu -22 291 186 744 122 89 0 chr6 70616981 70617104 -118662450 + MER1B DNA MER1_type 1 134 -163 1894 109 43 23 chr6 70617114 70617417 -118662137 + MER1B DNA MER1_type 31 339 0 327 300 30 10 chr6 70617420 70617520 -118662034 - LTR40a LTR ERVL -414 105 4 222 219 31 146 chr6 70617591 70617625 -118661929 - L2 LINE L2 -10 3303 3267 2037 107 21 17 chr6 70617625 70617916 -118661638 + AluSg1 SINE Alu 1 292 -17 222 219 31 146 chr6 70617916 70617977 -118661577 - L2 LINE L2 -46 3267 3219 2153 113 13 0 chr6 70618940 70619242 -118660312 - AluSx SINE Alu -6 306 1 993 290 49 8 chr6 70619242 70619607 -118659947 - LTR16C LTR ERVL -32 459 80 304 279 78 8 chr6 70619733 70619862 -118659692 + LTR33 LTR ERVL 327 464 -57 302 233 0 14 chr6 70620204 70620277 -118659277 + MIR SINE MIR 172 243 -19 * 1620 267 158 40 chr6 70620276 70620330 -118659224 - L2 LINE L2 0 3313 3267 2174 100 0 4 chr6 70620330 70620610 -118658944 + AluSg1 SINE Alu 17 295 -14 1620 267 158 40 chr6 70620610 70621261 -118658293 - L2 LINE L2 -46 3267 2525 254 27 108 0 chr6 70621272 70621309 -118658245 - MLT2A1 LTR ERVL 0 453 413 377 29 29 29 chr6 70621312 70621381 -118658173 + (TA)n Simple_repeat Simple_repeat 2 70 0 441 18 0 0 chr6 70621401 70621456 -118658098 - MLT2A2 LTR ERVL -398 55 1 378 58 0 0 chr6 70621456 70621508 -118658046 - HERVL-A2 LTR ERVL 0 5654 5603 623 116 35 6 chr6 70621512 70621684 -118657870 + (TA)n Simple_repeat Simple_repeat 1 177 0 2580 81 35 10 chr6 70621688 70622082 -118657472 - MLT2A1 LTR ERVL -40 404 1 15311 72 10 1 chr6 70622082 70624124 -118655430 - HERVL-A1 LTR ERVL 0 5654 3593 523 256 6 6 chr6 70624151 70624323 -118655231 + (TA)n Simple_repeat Simple_repeat 1 172 0 393 272 15 15 chr6 70624324 70624597 -118654957 + (CATG)n Simple_repeat Simple_repeat 1 273 0 333 156 89 11 chr6 70674929 70675019 -118604535 - Charlie4 DNA MER1_type -1280 681 585 2261 50 18 7 chr6 70675588 70675911 -118603643 - AluY SINE Alu 0 326 1 294 241 0 69 chr6 70676655 70676771 -118602783 + MLT1J LTR MaLR 6 113 -398 314 349 25 47 chr6 70677545 70677780 -118601774 + L2 LINE L2 3084 3313 0 249 98 0 0 chr6 70677956 70677997 -118601557 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 227 302 0 0 chr6 70678133 70678196 -118601358 - tRNA-Met-e tRNA tRNA -2 73 11 185 288 110 63 chr6 70678716 70678927 -118600627 - MIR3 SINE MIR -30 232 15 236 324 0 0 chr6 70679123 70679191 -118600363 - L2 LINE L2 -1 3271 3204 1895 259 112 34 chr6 70679454 70679977 -118599577 - L1MDb LINE L1 -3504 2902 2421 2034 136 0 3 chr6 70679977 70680272 -118599282 - AluSq SINE Alu -19 294 1 1895 259 112 34 chr6 70680272 70681762 -118597792 - L1MDb LINE L1 -3985 2421 783 427 164 0 0 chr6 70682342 70682415 -118597139 - tRNA-Ala-GCA tRNA tRNA -3 73 1 306 0 0 0 chr6 70683173 70683207 -118596347 + (TG)n Simple_repeat Simple_repeat 2 35 0 277 274 41 0 chr6 70683890 70683963 -118595591 + MIR SINE MIR 79 154 -108 190 340 61 61 chr6 70684845 70685139 -118594415 + L2 LINE L2 3019 3312 -1 550 138 18 0 chr6 70685326 70685435 -118594119 + GA-rich Low_complexity Low_complexity 2 112 0 277 250 0 0 chr6 70685556 70685624 -118593930 - tRNA-Met-e tRNA tRNA -2 73 6 2290 62 3 10 chr6 70686309 70686613 -118592941 - AluY SINE Alu -9 302 1 2082 93 40 33 chr6 70686824 70687125 -118592429 - AluSx SINE Alu -9 303 1 360 64 0 0 chr6 70687140 70687187 -118592367 + (TTTTA)n Simple_repeat Simple_repeat 1 47 0 1614 160 0 0 chr6 70687210 70687460 -118592094 - AluSx SINE Alu -62 250 1 252 299 82 10 chr6 70687578 70687675 -118591879 - L2 LINE L2 -1 3271 3168 2060 268 81 39 chr6 70687923 70689844 -118589710 - L1MDa LINE L1 -3493 3047 1005 521 110 0 0 chr6 70690520 70690593 -118588961 - tRNA-Ala-GCA tRNA tRNA -3 73 1 320 0 25 0 chr6 70690932 70690972 -118588582 + (TG)n Simple_repeat Simple_repeat 2 42 0 315 0 0 0 chr6 70691425 70691460 -118588094 + (TG)n Simple_repeat Simple_repeat 1 35 0 198 0 0 0 chr6 70693254 70693276 -118586278 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 240 252 165 35 chr6 70693953 70694068 -118585486 + L2 LINE L2 3183 3312 -1 410 176 14 0 chr6 70694381 70694455 -118585099 - tRNA-Met-e tRNA tRNA 0 75 1 246 297 16 0 chr6 70695382 70695446 -118584108 - L2 LINE L2 -4 3268 3204 508 300 33 0 chr6 70695685 70695955 -118583599 - L1M4 LINE L1 -3488 2658 2380 259 185 49 0 chr6 70696063 70696144 -118583410 + (TA)n Simple_repeat Simple_repeat 2 86 0 1171 118 114 24 chr6 70697047 70697302 -118582252 - L1MB4 LINE L1 0 6180 5903 329 140 0 0 chr6 70697825 70697882 -118581672 - tRNA-Ala-GCA tRNA tRNA -16 60 4 363 263 0 0 chr6 70698333 70698409 -118581145 - tRNA-Val-GTT tRNA tRNA 0 76 1 14162 158 42 34 chr6 70698467 70702826 -118576728 - L1MA8 LINE L1 -3 7707 3314 23 0 0 0 chr6 70703247 70703270 -118576284 + AT_rich Low_complexity Low_complexity 1 23 0 278 292 154 46 chr6 70704532 70704792 -118574762 + L2 LINE L2 2923 3210 -103 305 194 48 0 chr6 70705177 70705239 -118574315 + tRNA-His-CAC tRNA tRNA 1 65 -10 272 132 147 15 chr6 70705867 70705935 -118573619 - L2 LINE L2 -1 3312 3236 236 174 65 0 chr6 70706519 70706565 -118572989 - MER66A LTR ERV1 -141 337 289 541 96 0 0 chr6 70708571 70708644 -118570910 - tRNA-Ala-GCA tRNA tRNA -3 73 1 258 81 0 0 chr6 70708980 70709017 -118570537 + (TG)n Simple_repeat Simple_repeat 2 38 0 295 307 22 80 chr6 70709459 70709596 -118569958 - MIR3 SINE MIR -77 131 3 2083 122 7 0 chr6 70709679 70709975 -118569579 - AluSq SINE Alu -15 298 1 1707 180 28 0 chr6 70709987 70710270 -118569284 - AluJb SINE Alu -21 291 1 254 274 78 29 chr6 70710391 70710493 -118569061 - L2 LINE L2 -4 3268 3162 2188 263 82 46 chr6 70710809 70712668 -118566886 - L1MDa LINE L1 -3572 2968 1005 497 123 0 0 chr6 70713336 70713409 -118566145 - tRNA-Ala-GCA tRNA tRNA -3 73 1 25 51 0 0 chr6 70713704 70713743 -118565811 + AT_rich Low_complexity Low_complexity 1 39 0 194 0 39 0 chr6 70713748 70713774 -118565780 + (TG)n Simple_repeat Simple_repeat 2 28 0 198 0 0 0 chr6 70714221 70714243 -118565311 + (TG)n Simple_repeat Simple_repeat 1 22 0 279 311 78 0 chr6 70714919 70715022 -118564532 + MIR SINE MIR 44 154 -108 21 0 0 0 chr6 70715242 70715263 -118564291 + AT_rich Low_complexity Low_complexity 1 21 0 250 288 41 0 chr6 70716183 70716256 -118563298 + MIR SINE MIR 79 154 -108 367 332 45 38 chr6 70717153 70717445 -118562109 + L2 LINE L2 3019 3312 -1 1133 37 37 0 chr6 70717631 70717792 -118561762 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 284 250 0 0 chr6 70717914 70717982 -118561572 - tRNA-Met-e tRNA tRNA -2 73 6 225 347 32 34 chr6 70718614 70718768 -118560786 - MIR SINE MIR -77 131 3 2285 103 7 0 chr6 70718847 70719157 -118560397 - AluSx SINE Alu 0 312 1 404 0 39 0 chr6 70719167 70719218 -118560336 + (TTTTA)n Simple_repeat Simple_repeat 5 57 0 1560 172 32 0 chr6 70719218 70719468 -118560086 - AluSx SINE Alu -32 280 23 197 306 0 0 chr6 70719603 70719652 -118559902 - L2 LINE L2 -4 3268 3220 2140 270 84 39 chr6 70719938 70721847 -118557707 - L1MDa LINE L1 -3506 3034 1005 521 110 0 0 chr6 70722515 70722588 -118556966 - tRNA-Ala-GCA tRNA tRNA -3 73 1 28 29 0 0 chr6 70722880 70722915 -118556639 + AT_rich Low_complexity Low_complexity 1 35 0 206 62 31 0 chr6 70722918 70722950 -118556604 + (TG)n Simple_repeat Simple_repeat 2 34 0 279 311 78 0 chr6 70723249 70723352 -118556202 + MIR SINE MIR 44 154 -108 189 0 0 0 chr6 70724223 70724244 -118555310 + (A)n Simple_repeat Simple_repeat 1 21 0 311 271 18 12 chr6 70724893 70725063 -118554491 + (TATG)n Simple_repeat Simple_repeat 4 174 0 238 344 22 0 chr6 70725063 70725153 -118554401 + (CATG)n Simple_repeat Simple_repeat 2 93 0 197 289 0 19 chr6 70725153 70725257 -118554297 + (TATG)n Simple_repeat Simple_repeat 3 104 0 243 333 0 21 chr6 70725294 70725387 -118554167 + (CATG)n Simple_repeat Simple_repeat 1 91 0 294 276 21 9 chr6 70725387 70725703 -118553851 + (TATG)n Simple_repeat Simple_repeat 1 319 0 346 317 24 16 chr6 70725703 70725826 -118553728 + (CATG)n Simple_repeat Simple_repeat 1 124 0 192 218 35 23 chr6 70725840 70725927 -118553627 + (TATG)n Simple_repeat Simple_repeat 3 90 0 1082 169 24 17 chr6 70725958 70726319 -118553235 - MLT2A2 LTR ERVL 0 453 190 198 167 0 0 chr6 70726321 70726357 -118553197 + (TATG)n Simple_repeat Simple_repeat 3 38 0 600 340 40 14 chr6 70726357 70726662 -118552892 - L1ME3A LINE L1 -230 5940 5644 2181 205 40 89 chr6 70726662 70727068 -118552486 + LTR8 LTR ERV1 1 426 -265 258 32 0 0 chr6 70727068 70727099 -118552455 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1589 93 35 26 chr6 70727105 70727331 -118552223 + AluSg/x SINE Alu 83 310 0 2181 205 40 89 chr6 70727331 70727644 -118551910 + LTR8 LTR ERV1 431 691 0 600 340 40 14 chr6 70727644 70727758 -118551796 - L1ME3A LINE L1 -526 5644 5510 2640 102 11 5 chr6 70728001 70728374 -118551180 + THE1C LTR MaLR 1 375 0 475 179 104 0 chr6 70728678 70728784 -118550770 - MER99 DNA DNA -3 825 709 900 217 8 13 chr6 70728795 70729046 -118550508 + MLT1D LTR MaLR 6 182 -323 740 164 249 10 chr6 70729048 70729249 -118550305 + MSTA LTR MaLR 180 428 0 2613 124 0 0 chr6 70729251 70729654 -118549900 + THE1C-int LTR MaLR 3 405 -1175 1306 111 0 0 chr6 70729667 70729838 -118549716 - AluSg/x SINE Alu -2 310 140 6145 169 31 8 chr6 70729899 70731037 -118548517 + THE1C-int LTR MaLR 417 1580 0 1552 158 97 31 chr6 70731040 70731389 -118548165 + THE1C LTR MaLR 4 375 0 994 191 32 0 chr6 70731389 70731693 -118547861 + L1MA7 LINE L1 5861 6280 -11 227 170 38 0 chr6 70731698 70731751 -118547803 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 36 0 0 chr6 70731812 70731840 -118547714 + AT_rich Low_complexity Low_complexity 1 28 0 282 206 0 0 chr6 70732215 70732278 -118547276 + (TA)n Simple_repeat Simple_repeat 2 64 0 1322 319 80 40 chr6 70732493 70733143 -118546411 + MER115 DNA AcHobo 8 683 -10 2485 132 24 2 chr6 70733584 70734010 -118545544 + L1MA5A LINE L1 5860 6294 -3 2038 115 11 0 chr6 70734199 70734525 -118545029 + AluSp SINE Alu 1 329 0 206 241 0 0 chr6 70734704 70734758 -118544796 + (TTA)n Simple_repeat Simple_repeat 3 56 0 30 0 0 0 chr6 70736575 70736605 -118542949 + AT_rich Low_complexity Low_complexity 1 30 0 7024 65 3 4 chr6 70736688 70737647 -118541907 - L1P LINE L1 -1689 4457 3500 6852 61 3 3 chr6 70737647 70739224 -118540330 + L1PA6 LINE L1 4598 6152 -2 1826 192 13 18 chr6 70739869 70740260 -118539294 + MLT1B LTR MaLR 1 389 -1 25 0 0 0 chr6 70740519 70740544 -118539010 + AT_rich Low_complexity Low_complexity 1 25 0 284 364 92 0 chr6 70740807 70740980 -118538574 - MIR SINE MIR -11 251 63 240 264 0 0 chr6 70741154 70741241 -118538313 + (TA)n Simple_repeat Simple_repeat 1 87 0 31 58 0 0 chr6 70741315 70741367 -118538187 + AT_rich Low_complexity Low_complexity 1 52 0 1064 190 0 63 chr6 70743015 70743142 -118536412 - MLT1C LTR MaLR 0 467 358 2151 121 7 0 chr6 70743142 70743449 -118536105 - AluY SINE Alu -2 309 1 1064 190 0 63 chr6 70743449 70743542 -118536012 - MLT1C LTR MaLR -109 358 261 625 114 18 44 chr6 70743542 70743656 -118535898 - L1M2 LINE L1 -799 5513 5403 * 653 238 12 6 chr6 70743650 70743810 -118535744 + L1MA9 LINE L1 5881 6041 -271 372 278 22 0 chr6 70743947 70744037 -118535517 + L1PA16 LINE L1 2082 2173 -5408 2293 99 3 3 chr6 70744181 70744483 -118535071 + AluSx SINE Alu 1 302 -10 9265 237 88 27 chr6 70744577 70746901 -118532653 + L1PA16 LINE L1 2182 4361 -3243 2081 104 0 4 chr6 70746901 70747195 -118532359 + AluSg SINE Alu 14 306 0 9265 237 88 27 chr6 70747195 70750031 -118529523 + L1PA16 LINE L1 4361 7604 0 218 175 0 0 chr6 70750751 70750791 -118528763 - MER5B DNA MER1_type 0 178 139 205 165 0 47 chr6 70750802 70750887 -118528667 + (TAGA)n Simple_repeat Simple_repeat 3 83 0 197 268 93 41 chr6 70750938 70751035 -118528519 + MER5B DNA MER1_type 77 178 0 1869 100 6 103 chr6 70752175 70752515 -118527039 - AluSx SINE Alu -5 307 1 21 0 0 0 chr6 70753191 70753212 -118526342 + AT_rich Low_complexity Low_complexity 1 21 0 1978 246 28 18 chr6 70753570 70754070 -118525484 + MLT1D LTR MaLR 1 505 0 2397 86 0 0 chr6 70754250 70754554 -118525000 - AluSx SINE Alu -8 304 1 253 214 0 43 chr6 70754957 70755027 -118524527 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 30 83 0 0 chr6 70755796 70755868 -118523686 + AT_rich Low_complexity Low_complexity 1 72 0 448 332 9 57 chr6 70756581 70756792 -118522762 + MIR SINE MIR 2 202 -60 211 189 0 0 chr6 70756829 70756866 -118522688 + GA-rich Low_complexity Low_complexity 2 38 0 238 255 0 0 chr6 70756984 70757035 -118522519 - LTR16A1 LTR ERVL -2 455 405 2149 198 31 8 chr6 70758134 70758518 -118521036 - MSTD LTR MaLR -3 393 1 673 143 0 42 chr6 70759259 70759378 -118520176 + L1PA14 LINE L1 6044 6157 -4 47 61 0 0 chr6 70759454 70759536 -118520018 + AT_rich Low_complexity Low_complexity 1 82 0 26 50 0 0 chr6 70759742 70759782 -118519772 + AT_rich Low_complexity Low_complexity 1 40 0 29 47 0 0 chr6 70760746 70760789 -118518765 + AT_rich Low_complexity Low_complexity 1 43 0 303 28 0 0 chr6 70760856 70760892 -118518662 + (CA)n Simple_repeat Simple_repeat 2 37 0 1862 218 31 0 chr6 70761037 70761395 -118518159 + MLT2B3 LTR ERVL 133 501 -53 240 35 0 0 chr6 70761402 70761431 -118518123 + (TC)n Simple_repeat Simple_repeat 2 30 0 215 130 0 43 chr6 70761432 70761478 -118518076 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 25 31 0 0 chr6 70761655 70761687 -118517867 + AT_rich Low_complexity Low_complexity 1 32 0 370 212 0 0 chr6 70762033 70762099 -118517455 - U4 snRNA snRNA -79 66 1 25 31 0 0 chr6 70762169 70762201 -118517353 + AT_rich Low_complexity Low_complexity 1 32 0 267 103 0 0 chr6 70764333 70764372 -118515182 + (TG)n Simple_repeat Simple_repeat 2 40 0 660 333 105 6 chr6 70764427 70764778 -118514776 - LTR16B LTR ERVL -31 433 48 1148 208 36 88 chr6 70764908 70765293 -118514261 + MLT1A1 LTR MaLR 1 365 0 1446 179 4 50 chr6 70765397 70765788 -118513766 - L1M LINE L1 -740 5428 5067 * 4089 193 26 32 chr6 70765771 70766682 -118512872 + L1MA10 LINE L1 5420 6325 -9 25 51 0 0 chr6 70767412 70767451 -118512103 + AT_rich Low_complexity Low_complexity 1 39 0 254 273 0 0 chr6 70767557 70767612 -118511942 - MLT1I LTR MaLR 0 409 355 300 308 38 23 chr6 70767743 70767876 -118511678 - MLT1I LTR MaLR -270 139 5 239 337 79 48 chr6 70767879 70768131 -118511423 - L3 LINE CR1 -921 656 397 1732 133 23 41 chr6 70768164 70768488 -118511066 - MER44D DNA MER2_type -1 608 19 313 310 39 8 chr6 70768587 70768716 -118510838 + MIR SINE MIR 81 213 -49 234 309 51 29 chr6 70768861 70769036 -118510518 - L1ME LINE L1 -303 5818 5640 23 33 0 0 chr6 70769237 70769267 -118510287 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 70769352 70769380 -118510174 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 70769672 70769701 -118509853 + AT_rich Low_complexity Low_complexity 1 29 0 256 253 77 0 chr6 70769757 70769848 -118509706 + MLT1I LTR MaLR 312 409 0 1840 123 0 4 chr6 70770150 70770418 -118509136 - AluSg SINE Alu -43 267 1 441 93 0 0 chr6 70770429 70770483 -118509071 - Alu SINE Alu -258 60 7 2270 81 14 7 chr6 70770883 70771179 -118508375 - AluY SINE Alu -13 298 1 1855 157 3 3 chr6 70771181 70771475 -118508079 - AluJo SINE Alu -18 294 1 2720 36 3 0 chr6 70772243 70772552 -118507002 + L1PA2 LINE L1 5846 6155 0 1388 191 102 0 chr6 70772739 70772995 -118506559 + AluJb SINE Alu 1 282 -30 258 32 0 0 chr6 70772995 70773026 -118506528 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 1720 173 21 0 chr6 70773049 70773333 -118506221 + AluJb SINE Alu 1 290 -22 573 181 95 0 chr6 70773342 70773458 -118506096 - MER3 DNA MER1_type -61 148 22 1537 196 14 17 chr6 70773460 70773615 -118505939 - AluJb SINE Alu -21 291 136 2292 99 0 10 chr6 70773615 70773917 -118505637 - AluSg SINE Alu -11 299 1 1537 196 14 17 chr6 70773917 70774052 -118505502 - AluJb SINE Alu -176 136 2 1811 143 13 52 chr6 70774115 70774422 -118505132 + AluSx SINE Alu 1 295 -17 2156 134 3 0 chr6 70774750 70775057 -118504497 + AluSx SINE Alu 1 308 -4 188 351 76 72 chr6 70775090 70775366 -118504188 - L2 LINE L2 -3 3269 2993 1554 144 93 4 chr6 70775383 70775653 -118503901 + AluJo SINE Alu 12 305 -7 838 146 0 8 chr6 70775658 70775788 -118503766 + FLAM_C SINE Alu 7 135 -8 1740 179 0 0 chr6 70776026 70776323 -118503231 + AluJo SINE Alu 1 297 -15 1162 138 5 35 chr6 70776863 70777066 -118502488 + AluJo SINE Alu 24 220 -92 508 167 83 21 chr6 70777454 70777550 -118502004 - AluSg/x SINE Alu -14 298 197 1196 125 0 0 chr6 70777550 70777710 -118501844 + AluSg/x SINE Alu 139 298 -14 1893 159 10 19 chr6 70777720 70778034 -118501520 + AluJo SINE Alu 1 311 -1 225 265 98 39 chr6 70778037 70778139 -118501415 + MER5A DNA MER1_type 74 181 -8 * 269 211 0 0 chr6 70778131 70778188 -118501366 + MIR3 SINE MIR 147 203 -5 903 103 0 0 chr6 70778347 70778464 -118501090 + FLAM_C SINE Alu 2 118 -15 2058 148 3 0 chr6 70778784 70779135 -118500419 + AluSx SINE Alu 1 352 0 1481 177 43 46 chr6 70779533 70779656 -118499898 + AluJo SINE Alu 2 124 -188 1816 123 17 34 chr6 70779656 70779949 -118499605 + AluSg SINE Alu 1 288 -22 1481 177 43 46 chr6 70779949 70780130 -118499424 + AluJo SINE Alu 124 305 -7 257 268 179 18 chr6 70780193 70780305 -118499249 - L2 LINE L2 -205 3067 2938 1905 122 7 24 chr6 70780349 70780670 -118498884 - AluSx SINE Alu 0 316 1 1483 165 39 54 chr6 70781495 70781622 -118497932 + AluJo SINE Alu 1 128 -184 2053 122 10 0 chr6 70781622 70781910 -118497644 - AluSx SINE Alu -21 291 1 1483 165 39 54 chr6 70781910 70782061 -118497493 + AluJo SINE Alu 128 275 -37 485 0 33 0 chr6 70782066 70782126 -118497428 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 2358 105 0 0 chr6 70782571 70782877 -118496677 - AluSg SINE Alu -4 306 1 1861 140 0 0 chr6 70782915 70783187 -118496367 - AluSx SINE Alu -2 310 39 1611 101 27 0 chr6 70783708 70784026 -118495528 + L1P4 LINE L1 5161 5485 -683 2218 102 0 7 chr6 70784027 70784322 -118495232 + AluSx SINE Alu 2 294 -18 1966 221 143 58 chr6 70784503 70784652 -118494902 + MER82 DNA MER2_type 1 136 -517 2054 122 0 46 chr6 70784652 70784956 -118494598 + AluSx SINE Alu 1 290 -22 1966 221 143 58 chr6 70784956 70785408 -118494146 + MER82 DNA MER2_type 136 653 0 841 132 16 99 chr6 70786075 70786257 -118493297 - FAM SINE Alu -11 174 8 430 252 50 8 chr6 70786318 70786437 -118493117 + MLT1G1 LTR MaLR 16 139 -456 2549 112 25 6 chr6 70786536 70786893 -118492661 + THE1B LTR MaLR 1 364 0 9850 102 60 43 chr6 70786894 70788441 -118491113 + THE1B-int LTR MaLR 2 1574 -6 1340 108 49 5 chr6 70788448 70788651 -118490903 + THE1B LTR MaLR 3 214 -150 801 177 15 0 chr6 70788660 70788790 -118490764 - FLAM_C SINE Alu -1 132 1 631 158 0 0 chr6 70788792 70788893 -118490661 - AluSp/q SINE Alu -3 310 210 21 0 0 0 chr6 70791929 70791950 -118487604 + AT_rich Low_complexity Low_complexity 1 21 0 296 240 115 19 chr6 70792358 70792462 -118487092 + L2 LINE L2 3104 3217 -96 1692 174 66 0 chr6 70792468 70792772 -118486782 + MER2 DNA MER2_type 1 324 -21 1370 122 91 0 chr6 70792772 70792993 -118486561 + L1MA6 LINE L1 6056 6296 -4 23 33 0 0 chr6 70793009 70793039 -118486515 + AT_rich Low_complexity Low_complexity 1 30 0 1677 209 13 73 chr6 70793275 70793319 -118486235 + MLT1A2 LTR MaLR 1 46 -328 2522 58 3 13 chr6 70793319 70793629 -118485925 + AluY SINE Alu 1 307 -4 1677 209 13 73 chr6 70793629 70793912 -118485642 + MLT1A2 LTR MaLR 46 303 -71 1976 155 30 0 chr6 70793912 70794216 -118485338 - AluSx SINE Alu 0 313 1 1677 209 13 73 chr6 70794216 70794284 -118485270 + MLT1A2 LTR MaLR 303 374 0 1028 173 81 20 chr6 70794304 70794435 -118485119 + MER3 DNA MER1_type 1 149 -60 2510 63 0 0 chr6 70794435 70794734 -118484820 - AluY SINE Alu -12 299 1 1028 173 81 20 chr6 70794734 70794799 -118484755 + MER3 DNA MER1_type 149 209 0 25 51 0 0 chr6 70795345 70795384 -118484170 + AT_rich Low_complexity Low_complexity 1 39 0 1037 225 126 48 chr6 70796123 70796745 -118482809 + LTR41 LTR ERVL 1 773 0 487 229 8 8 chr6 70797148 70797266 -118482288 + LTR37B LTR ERV1 351 468 0 2505 73 0 3 chr6 70797373 70797676 -118481878 + AluY SINE Alu 1 302 -9 988 223 28 14 chr6 70797741 70797956 -118481598 + MER20 DNA MER1_type 1 218 -1 24 0 0 0 chr6 70798087 70798111 -118481443 + AT_rich Low_complexity Low_complexity 1 24 0 605 228 6 56 chr6 70799473 70799635 -118479919 - MER20 DNA MER1_type -6 213 60 1018 249 194 58 chr6 70800039 70800318 -118479236 + MLT1E LTR MaLR 1 241 -352 2316 132 33 36 chr6 70800318 70800683 -118478871 + THE1B LTR MaLR 1 364 0 1018 249 194 58 chr6 70800683 70800925 -118478629 + MLT1E LTR MaLR 241 593 0 988 267 30 18 chr6 70801103 70801436 -118478118 + MER90 LTR ERV1 40 376 -199 2089 162 45 38 chr6 70801443 70801999 -118477555 - MLT2A2 LTR ERVL 0 554 1 457 256 35 74 chr6 70802000 70802203 -118477351 + MER90 LTR ERV1 420 614 0 2333 85 0 3 chr6 70803174 70803479 -118476075 + AluSg SINE Alu 1 304 -6 1948 158 3 3 chr6 70803488 70803799 -118475755 + AluSx SINE Alu 1 311 -1 734 124 124 16 chr6 70803972 70804093 -118475461 - FLAM_C SINE Alu -4 139 6 2005 137 3 7 chr6 70804121 70804420 -118475134 - AluSx SINE Alu -14 298 1 2197 102 10 3 chr6 70804465 70804760 -118474794 + AluSg SINE Alu 1 297 -13 309 214 114 0 chr6 70805097 70805167 -118474387 - MER21B LTR ERV1 -289 574 497 21 0 0 0 chr6 70805215 70805236 -118474318 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 70805462 70805491 -118474063 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr6 70805548 70805570 -118473984 + AT_rich Low_complexity Low_complexity 1 22 0 249 366 20 10 chr6 70805661 70805762 -118473792 - MIR SINE MIR -87 121 20 2308 98 0 3 chr6 70805778 70806075 -118473479 - AluSq SINE Alu -17 296 1 312 68 0 0 chr6 70806228 70806272 -118473282 + L1MA3 LINE L1 6262 6305 0 21 0 0 0 chr6 70806272 70806293 -118473261 + AT_rich Low_complexity Low_complexity 1 21 0 1616 135 4 4 chr6 70806297 70806527 -118473027 + AluSx SINE Alu 35 264 -48 2204 77 0 40 chr6 70806778 70807076 -118472478 + AluY SINE Alu 1 286 -25 2309 208 165 63 chr6 70807081 70807348 -118472206 + MER21B LTR ERV1 15 253 -610 1896 152 16 13 chr6 70807348 70807651 -118471903 - AluJo SINE Alu -8 304 1 2309 208 165 63 chr6 70807651 70808099 -118471455 + MER21B LTR ERV1 253 803 -60 1608 170 0 51 chr6 70808106 70808200 -118471354 + AluJb SINE Alu 13 110 -202 2336 72 28 3 chr6 70808200 70808491 -118471063 - AluY SINE Alu -13 298 1 1608 170 0 51 chr6 70808491 70808707 -118470847 + AluJb SINE Alu 110 307 -5 527 253 174 11 chr6 70808790 70808980 -118470574 + L1MC5 LINE L1 7690 7910 -51 2218 90 0 14 chr6 70809001 70809320 -118470234 + AluY SINE Alu 2 316 0 2119 118 0 7 chr6 70809327 70809623 -118469931 + AluSx SINE Alu 1 294 -18 282 91 76 0 chr6 70809755 70809821 -118469733 + T-rich Low_complexity Low_complexity 1 71 0 2118 124 0 0 chr6 70809846 70810158 -118469396 - AluSq SINE Alu 0 312 1 2095 133 20 0 chr6 70810185 70810486 -118469068 + AluSc SINE Alu 1 307 -2 2288 98 0 3 chr6 70810486 70810780 -118468774 + AluSg SINE Alu 1 294 -16 1971 141 3 0 chr6 70810808 70811112 -118468442 - AluSq SINE Alu -8 305 1 721 190 325 8 chr6 70811569 70811806 -118467748 + MLT1E2 LTR MaLR 87 398 -228 1725 169 24 3 chr6 70811941 70812236 -118467318 + AluJb SINE Alu 3 303 -9 2468 62 0 7 chr6 70812236 70812545 -118467009 + AluY SINE Alu 1 307 -4 287 322 7 35 chr6 70812797 70812940 -118466614 + L1ME LINE L1 5478 5616 -505 1017 110 27 0 chr6 70813776 70813922 -118465632 - AluSg/x SINE Alu -14 298 149 1992 82 15 19 chr6 70813928 70814242 -118465312 - AluSx SINE Alu 0 312 20 2175 119 0 3 chr6 70814253 70814547 -118465007 - AluSg SINE Alu -9 301 9 775 207 14 0 chr6 70815646 70815786 -118463768 - AluSg/x SINE Alu -16 296 155 186 133 0 0 chr6 70816042 70816072 -118463482 + (CATA)n Simple_repeat Simple_repeat 2 31 0 284 175 16 0 chr6 70816123 70816186 -118463368 + (TA)n Simple_repeat Simple_repeat 1 64 0 3007 163 24 11 chr6 70816347 70816888 -118462666 + L1MA4 LINE L1 5742 6289 -11 278 295 21 21 chr6 70818025 70818120 -118461434 + MER69 DNA AcHobo 50 144 -2382 371 200 12 0 chr6 70818918 70818998 -118460556 - MLT1H LTR MaLR -3 546 466 240 321 36 0 chr6 70819126 70819210 -118460344 - MLT1H LTR MaLR -296 253 167 1859 200 99 32 chr6 70821142 70821577 -118457977 + MLT2B1 LTR ERVL 1 464 -56 303 140 0 0 chr6 70821582 70821632 -118457922 + (CA)n Simple_repeat Simple_repeat 1 50 0 255 82 102 20 chr6 70821632 70821667 -118457887 + Ricksha DNA DNA 865 903 -1143 1347 251 89 0 chr6 70821667 70822017 -118457537 + ERVL-B1 LTR ERVL 2 382 -5382 216 209 0 0 chr6 70822772 70822815 -118456739 + (TAA)n Simple_repeat Simple_repeat 3 45 0 2248 111 19 0 chr6 70822991 70823298 -118456256 + AluSq SINE Alu 1 313 0 21 0 0 0 chr6 70825902 70825923 -118453631 + AT_rich Low_complexity Low_complexity 1 21 0 1004 181 39 0 chr6 70825977 70826159 -118453395 - MER5A DNA MER1_type 0 189 1 243 310 51 82 chr6 70826163 70826367 -118453187 + MIR SINE MIR 19 216 -46 252 235 54 108 chr6 70826539 70826743 -118452811 + L1MC4a LINE L1 4628 4820 -1326 5637 106 29 7 chr6 70826756 70827519 -118452035 + LTR17 LTR ERV1 1 780 0 239 286 0 13 chr6 70827519 70827591 -118451963 + (CATA)n Simple_repeat Simple_repeat 1 71 0 305 315 0 0 chr6 70827592 70827681 -118451873 + L1MC4 LINE L1 6615 6703 -1339 374 280 59 29 chr6 70827874 70828113 -118451441 + L1MC4a LINE L1 5114 5359 -787 234 91 0 0 chr6 70828113 70828146 -118451408 + (GAA)n Simple_repeat Simple_repeat 1 33 0 549 304 132 7 chr6 70828195 70828484 -118451070 + L1MC4a LINE L1 5491 5815 -1993 398 156 101 37 chr6 70828535 70828644 -118450910 + L1MEd LINE L1 72 187 -5932 264 297 71 50 chr6 70828694 70828876 -118450678 + L1MEd LINE L1 270 455 -5664 * 542 308 80 17 chr6 70828874 70829499 -118450055 + L1ME3A LINE L1 5265 5952 -218 735 283 0 11 chr6 70830987 70831174 -118448380 - MER5A DNA MER1_type -4 185 1 22 35 0 0 chr6 70831291 70831320 -118448234 + AT_rich Low_complexity Low_complexity 1 29 0 2563 72 0 0 chr6 70831399 70831704 -118447850 + AluSc SINE Alu 1 305 -4 1002 204 195 13 chr6 70831912 70832230 -118447324 + L1MC4a LINE L1 6579 6954 -854 * 1068 195 68 152 chr6 70832224 70832844 -118446710 + L1MC4 LINE L1 7475 8042 0 30 69 0 0 chr6 70832850 70832908 -118446646 + AT_rich Low_complexity Low_complexity 1 58 0 626 236 89 16 chr6 70833607 70833798 -118445756 + MIR SINE MIR 34 238 -24 1977 124 21 7 chr6 70833982 70834272 -118445282 - AluSx SINE Alu -18 294 1 2458 71 0 7 chr6 70835203 70835512 -118444042 + AluY SINE Alu 1 307 -4 28 0 0 0 chr6 70839077 70839105 -118440449 + AT_rich Low_complexity Low_complexity 1 28 0 804 273 244 7 chr6 70839105 70839559 -118439995 - L1ME3A LINE L1 0 6170 5609 204 296 174 23 chr6 70840066 70840238 -118439316 + MIR SINE MIR 65 262 0 2244 163 31 8 chr6 70842222 70842609 -118436945 - MER57A LTR ERV1 0 403 8 189 0 0 0 chr6 70842677 70842698 -118436856 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 207 185 37 37 chr6 70843624 70843705 -118435849 + (TA)n Simple_repeat Simple_repeat 1 81 0 238 233 110 0 chr6 70843705 70843778 -118435776 - L1MC/D LINE L1 -2031 5777 5697 674 335 128 7 chr6 70843783 70844099 -118435455 + L2 LINE L2 2956 3309 -4 * 768 263 149 0 chr6 70844094 70844349 -118435205 - L1MC/D LINE L1 -2121 5687 5395 2419 63 0 7 chr6 70844547 70844848 -118434706 - AluY SINE Alu -12 299 1 1923 140 14 0 chr6 70845078 70845371 -118434183 + AluSx SINE Alu 1 297 -15 24 53 0 0 chr6 70846784 70846822 -118432732 + AT_rich Low_complexity Low_complexity 1 38 0 3209 216 27 42 chr6 70846854 70847846 -118431708 - L1ME1 LINE L1 -5 6230 5256 3904 247 72 19 chr6 70847861 70849272 -118430282 - L1ME1 LINE L1 -4876 1520 35 271 239 0 30 chr6 70849812 70849879 -118429675 - MIR SINE MIR -80 182 118 223 379 42 11 chr6 70850176 70850271 -118429283 + L2 LINE L2 3175 3272 0 517 278 232 3 chr6 70850519 70850872 -118428682 + L2 LINE L2 2543 2976 -338 1427 179 31 82 chr6 70852358 70852748 -118426806 + MLT1A2 LTR MaLR 4 373 -1 25 0 0 0 chr6 70852996 70853021 -118426533 + AT_rich Low_complexity Low_complexity 1 25 0 401 315 107 75 chr6 70853526 70854207 -118425347 - L2 LINE L2 -8 3264 2545 302 358 82 31 chr6 70854558 70854851 -118424703 + L1M4 LINE L1 3490 3797 -2349 2026 168 5 35 chr6 70855076 70855452 -118424102 + MLT1A1 LTR MaLR 1 365 0 2143 205 91 0 chr6 70855610 70856073 -118423481 - MLT1D LTR MaLR 0 505 1 411 339 33 6 chr6 70856130 70856313 -118423241 + MIR SINE MIR 31 218 -44 227 273 61 42 chr6 70856326 70856590 -118422964 + HAL1 LINE L1 993 1261 -1246 2224 116 7 0 chr6 70856624 70856934 -118422620 + AluSx SINE Alu 1 312 0 786 268 176 6 chr6 70857020 70857360 -118422194 + HAL1 LINE L1 1491 1888 -619 394 225 113 0 chr6 70857430 70857553 -118422001 - MLT1J LTR MaLR -255 256 78 418 345 116 13 chr6 70857630 70857862 -118421692 - MIR SINE MIR -5 257 2 213 200 0 0 chr6 70858577 70858622 -118420932 + (TG)n Simple_repeat Simple_repeat 1 45 0 1902 67 0 31 chr6 70859211 70859466 -118420088 + AluY SINE Alu 63 309 -2 293 261 68 0 chr6 70861176 70861264 -118418290 - MLT1J2 LTR MaLR -13 437 344 546 304 103 10 chr6 70861383 70861587 -118417967 - MER58A DNA MER1_type -1 223 1 385 314 33 7 chr6 70861600 70861753 -118417801 - MLT1J2 LTR MaLR -267 183 27 2448 124 30 3 chr6 70862498 70862862 -118416692 + THE1C LTR MaLR 2 375 0 674 267 129 23 chr6 70864900 70865112 -118414442 + MIR SINE MIR 2 236 -26 542 252 0 0 chr6 70865112 70865215 -118414339 + MER5A DNA MER1_type 3 105 -84 216 293 51 96 chr6 70865138 70865295 -118414259 - MER5A DNA MER1_type -16 173 24 * 1925 116 3 77 chr6 70865492 70865802 -118413752 - AluSx SINE Alu -20 292 6 484 354 77 11 chr6 70867562 70867836 -118411718 + L3 LINE CR1 1173 1464 -113 272 230 50 60 chr6 70868072 70868172 -118411382 + LTR48B LTR ERV1 1 99 -545 * 1436 185 50 76 chr6 70868147 70868607 -118410947 + MER39 LTR ERV1 260 707 0 * 1690 219 50 44 chr6 70868607 70869150 -118410404 - MER77 LTR ERV1 -7 598 1 224 283 0 54 chr6 70869259 70869351 -118410203 - MER5B DNA MER1_type -84 94 8 355 264 18 27 chr6 70870272 70870382 -118409172 - L2 LINE L2 -12 3301 3193 199 376 12 0 chr6 70870693 70870778 -118408776 + L2 LINE L2 2564 2649 -665 215 294 99 41 chr6 70870884 70871105 -118408449 + L2 LINE L2 2830 3063 -209 32 0 0 0 chr6 70871358 70871390 -118408164 + AT_rich Low_complexity Low_complexity 1 32 0 244 340 21 91 chr6 70872480 70872765 -118406789 + L2 LINE L2 2905 3169 -103 2239 123 3 3 chr6 70873710 70874020 -118405534 + AluSx SINE Alu 1 310 -2 1151 178 57 44 chr6 70874127 70874168 -118405386 - MLT1D LTR MaLR 0 505 466 1841 181 3 7 chr6 70874168 70874471 -118405083 + AluJo SINE Alu 3 304 -8 1151 178 57 44 chr6 70874471 70874750 -118404804 - MLT1D LTR MaLR -39 466 116 325 241 69 0 chr6 70874940 70875027 -118404527 - MLT1D LTR MaLR -339 166 74 5279 40 0 0 chr6 70875067 70875694 -118403860 - L1PA5 LINE L1 0 6154 5528 2414 224 20 11 chr6 70875694 70876234 -118403320 - MER68 LTR ERV1 -17 545 1 284 211 0 0 chr6 70876234 70876286 -118403268 - MLT1D LTR MaLR -426 79 28 3138 70 2 0 chr6 70876287 70876700 -118402854 - L1PA7 LINE L1 -3 6151 5738 4101 68 9 4 chr6 70876700 70877567 -118401987 - L1P3 LINE L1 -341 5813 4944 590 344 74 45 chr6 70877723 70878502 -118401052 + L2 LINE L2 2405 3272 0 652 202 0 0 chr6 70878530 70878649 -118400905 + L1MB8 LINE L1 5554 5672 -506 * 746 197 40 48 chr6 70878631 70878859 -118400695 + L1MB8 LINE L1 5953 6178 0 1180 236 112 50 chr6 70879021 70879457 -118400097 - Charlie1a DNA MER1_type -992 463 1 1756 183 7 7 chr6 70879609 70879904 -118399650 - AluJo SINE Alu -12 300 6 392 161 0 11 chr6 70881189 70881276 -118398278 + GA-rich Low_complexity Low_complexity 4 89 0 634 250 44 17 chr6 70881910 70882090 -118397464 + MIR SINE MIR 74 258 -4 281 93 19 0 chr6 70882141 70882195 -118397359 + (GA)n Simple_repeat Simple_repeat 2 56 0 512 326 23 27 chr6 70883615 70883836 -118395718 - LTR40a LTR ERVL -143 376 157 345 274 47 0 chr6 70883851 70883957 -118395597 - LTR40a LTR ERVL -321 198 88 349 304 178 4 chr6 70883997 70884185 -118395369 + MIR SINE MIR 11 229 -33 372 291 75 42 chr6 70884204 70884469 -118395085 - MLT1J LTR MaLR 0 511 238 326 256 13 0 chr6 70884621 70884699 -118394855 - MLT1L LTR MaLR -536 79 1 508 250 146 26 chr6 70885698 70885890 -118393664 - MER58C DNA MER1_type 0 215 1 405 186 27 82 chr6 70885921 70886104 -118393450 - Charlie7 DNA MER1_type 0 2612 2440 342 263 10 20 chr6 70886097 70886196 -118393358 - Charlie7 DNA MER1_type -2507 105 8 * 374 194 117 0 chr6 70887343 70887446 -118392108 + LTR50 LTR ERVL 650 764 -31 * 487 303 99 7 chr6 70887444 70887887 -118391667 - LTR50 LTR ERVL -143 652 87 194 250 107 0 chr6 70888774 70888830 -118390724 + MIR SINE MIR 153 214 -48 2250 84 3 34 chr6 70889477 70889797 -118389757 + AluY SINE Alu 1 310 -1 1225 89 0 58 chr6 70889798 70889988 -118389566 + AluSc SINE Alu 131 309 0 914 288 102 38 chr6 70890569 70890675 -118388879 + L2 LINE L2 2219 2317 -997 1777 160 5 61 chr6 70890675 70891051 -118388503 + THE1A LTR MaLR 1 355 0 914 288 102 38 chr6 70891051 70891465 -118388089 + L2 LINE L2 2317 2772 -542 1598 184 20 20 chr6 70891634 70891927 -118387627 - AluJo SINE Alu -17 295 3 425 280 136 47 chr6 70892040 70892276 -118387278 + MIR SINE MIR 1 257 -5 456 320 32 15 chr6 70892872 70893069 -118386485 - MIR SINE MIR -21 241 37 319 157 90 11 chr6 70893294 70893383 -118386171 - Charlie4 DNA MER1_type -1280 681 586 2168 75 18 7 chr6 70893951 70894252 -118385302 - AluY SINE Alu 0 304 1 245 315 0 36 chr6 70895052 70895163 -118384391 - MLT1J LTR MaLR -416 126 20 648 270 14 60 chr6 70895174 70895389 -118384165 + MLT1J LTR MaLR 6 210 -301 1690 225 57 55 chr6 70895398 70895926 -118383628 - MLT1F1 LTR MaLR -13 554 1 297 245 240 25 chr6 70896526 70896722 -118382832 + MIR SINE MIR 13 250 -12 309 51 0 0 chr6 70896828 70896867 -118382687 + (TG)n Simple_repeat Simple_repeat 2 40 0 255 298 134 59 chr6 70897227 70898014 -118381540 - L2 LINE L2 -188 3084 2245 32 57 0 0 chr6 70898486 70898539 -118381015 + AT_rich Low_complexity Low_complexity 1 53 0 311 302 54 40 chr6 70898589 70898738 -118380816 - L1MC4a LINE L1 -1883 5925 5775 1175 240 49 32 chr6 70898844 70899287 -118380267 + LTR40a LTR ERVL 1 450 -12 478 292 139 1 chr6 70899333 70899532 -118380022 - MIR SINE MIR -3 259 34 26 0 0 0 chr6 70899722 70899748 -118379806 + AT_rich Low_complexity Low_complexity 1 26 0 209 366 24 12 chr6 70899762 70899844 -118379710 - L2 LINE L2 -63 3209 3127 318 115 0 0 chr6 70900173 70900225 -118379329 + (CA)n Simple_repeat Simple_repeat 1 52 0 22 56 0 0 chr6 70901201 70901237 -118378317 + AT_rich Low_complexity Low_complexity 1 36 0 261 230 27 74 chr6 70902538 70902686 -118376868 - Charlie7 DNA MER1_type -1 2611 2471 845 215 0 13 chr6 70902824 70902982 -118376572 - FRAM SINE Alu -10 156 1 335 281 0 0 chr6 70902992 70903088 -118376466 - Charlie7 DNA MER1_type -1914 698 603 2048 104 60 0 chr6 70903107 70903443 -118376111 - L1MA5A LINE L1 -5 6292 5937 5222 158 35 15 chr6 70903456 70903980 -118375574 - L1MA4 LINE L1 -4 6296 5784 306 0 0 0 chr6 70903980 70904014 -118375540 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1754 173 11 11 chr6 70904014 70904297 -118375257 - AluSx SINE Alu -29 283 1 5222 158 35 15 chr6 70904297 70905490 -118374064 - L1MA4 LINE L1 -515 5785 4543 1316 275 103 19 chr6 70905490 70906032 -118373522 - Charlie7 DNA MER1_type -1995 617 30 255 182 78 13 chr6 70906706 70906783 -118372771 - Charlie7 DNA MER1_type -2501 111 30 190 228 101 139 chr6 70908480 70908638 -118370916 + MER5A DNA MER1_type 2 164 -25 22 0 0 0 chr6 70912318 70912340 -118367214 + AT_rich Low_complexity Low_complexity 1 22 0 2038 139 0 0 chr6 70912351 70912646 -118366908 + AluSx SINE Alu 1 295 -17 28 61 0 0 chr6 70913510 70913559 -118365995 + AT_rich Low_complexity Low_complexity 1 49 0 605 162 142 0 chr6 70914022 70914144 -118365410 + MLT1G1 LTR MaLR 1 97 -458 476 210 109 0 chr6 70914144 70914263 -118365291 - MIR SINE MIR -46 216 85 201 147 0 0 chr6 70914330 70914364 -118365190 + MIR SINE MIR 229 262 0 273 118 0 0 chr6 70915843 70915894 -118363660 + (CAAAA)n Simple_repeat Simple_repeat 3 53 0 4297 124 9 3 chr6 70915972 70916619 -118362935 - MER39B LTR ERV1 0 653 3 20817 166 62 74 chr6 70916693 70917953 -118361601 - MER39B-int LTR ERV1 -165 6166 4892 2116 116 17 7 chr6 70917953 70918246 -118361308 - AluSq SINE Alu -17 296 1 20817 166 62 74 chr6 70918246 70920118 -118359436 - MER39B-int LTR ERV1 -1439 4892 2999 2216 92 0 23 chr6 70920118 70920423 -118359131 - AluY SINE Alu -13 298 1 20817 166 62 74 chr6 70920423 70922653 -118356901 - MER39B-int LTR ERV1 -3332 2999 868 2937 176 80 0 chr6 70922685 70923212 -118356342 - MER39B-int LTR ERV1 -5762 569 1 418 139 0 14 chr6 70923214 70923286 -118356268 - MER39B LTR ERV1 -1 594 524 459 136 0 0 chr6 70923334 70923400 -118356154 + MER39B LTR ERV1 586 651 -2 758 266 50 18 chr6 70924448 70924666 -118354888 - MIR SINE MIR -6 256 32 755 190 0 0 chr6 70924711 70924832 -118354722 + AluSp SINE Alu 2 122 -191 198 0 0 0 chr6 70924832 70924854 -118354700 + (T)n Simple_repeat Simple_repeat 1 22 0 180 111 0 0 chr6 70925913 70925940 -118353614 + (CAT)n Simple_repeat Simple_repeat 3 29 0 21 0 0 0 chr6 70926901 70926922 -118352632 + AT_rich Low_complexity Low_complexity 1 21 0 339 256 73 43 chr6 70927768 70927932 -118351622 + L1M4 LINE L1 4417 4585 -1561 25 51 0 0 chr6 70928044 70928083 -118351471 + AT_rich Low_complexity Low_complexity 1 39 0 231 348 104 7 chr6 70928083 70928218 -118351336 + L3 LINE CR1 1420 1567 -10 325 242 71 40 chr6 70928806 70928905 -118350649 + MER5A DNA MER1_type 88 189 0 634 319 239 29 chr6 70929304 70930275 -118349279 - L2 LINE L2 -41 3272 2096 305 286 12 0 chr6 70931389 70931473 -118348081 - MIR SINE MIR -111 151 67 192 349 94 28 chr6 70931624 70931730 -118347824 - MER5B DNA MER1_type 0 178 66 1044 83 0 0 chr6 70932274 70932406 -118347148 + AluY SINE Alu 172 303 -8 419 247 108 114 chr6 70932722 70933082 -118346472 - L1M4 LINE L1 -3111 3035 2678 678 183 29 22 chr6 70933236 70933373 -118346181 + MLT1C LTR MaLR 329 466 -1 2263 327 48 26 chr6 70933639 70934529 -118345025 + L1PA15 LINE L1 1 910 -5877 12408 231 73 8 chr6 70934613 70938868 -118340686 + L1PA15 LINE L1 1333 5929 -868 1492 192 4 4 chr6 70938868 70939139 -118340415 + L1PA15 LINE L1 6540 6815 -1 2200 96 0 26 chr6 70939594 70939906 -118339648 - AluSc SINE Alu -5 304 1 2854 112 2 30 chr6 70940120 70940556 -118338998 - MSTA LTR MaLR -3 425 2 728 116 16 0 chr6 70940645 70940766 -118338788 + L1PA16 LINE L1 6043 6165 -1 231 205 128 13 chr6 70942031 70942109 -118337445 - MER34 LTR ERV1 -6 536 450 22 0 0 0 chr6 70942301 70942323 -118337231 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 70942417 70942443 -118337111 + AT_rich Low_complexity Low_complexity 1 26 0 230 140 0 40 chr6 70942588 70942638 -118336916 + (GGGA)n Simple_repeat Simple_repeat 3 50 0 2282 97 13 0 chr6 70942878 70943178 -118336376 + AluSg SINE Alu 2 305 -5 288 133 0 0 chr6 70946143 70946203 -118333351 + (CCTG)n Simple_repeat Simple_repeat 2 61 0 2001 105 0 7 chr6 70946206 70946482 -118333072 - AluSq SINE Alu -39 274 1 779 141 11 97 chr6 70946845 70946881 -118332673 - L1MB3 LINE L1 -8 6175 6137 1914 129 36 0 chr6 70946881 70947161 -118332393 + AluSx SINE Alu 1 290 -22 779 141 11 97 chr6 70947161 70947309 -118332245 - L1MB3 LINE L1 -46 6137 6007 250 177 9 66 chr6 70947310 70947417 -118332137 + MER34C LTR ERV1 83 232 -353 414 56 0 0 chr6 70947609 70947663 -118331891 - Alu SINE Alu -11 299 246 540 194 67 42 chr6 70947664 70947829 -118331725 + MER34 LTR ERV1 372 540 -2 3068 149 41 11 chr6 70947831 70948393 -118331161 - L1MB3 LINE L1 -216 5967 5389 2828 218 65 49 chr6 70948465 70949026 -118330528 - L1ME1 LINE L1 -5 6161 5611 2246 218 55 33 chr6 70949026 70949568 -118329986 - MLT2B3 LTR ERVL 0 554 1 2828 218 65 49 chr6 70949568 70950103 -118329451 - L1ME1 LINE L1 -555 5611 5048 563 315 49 20 chr6 70950452 70950655 -118328899 + L1PA13 LINE L1 802 1010 -6564 * 1788 294 32 2 chr6 70950651 70951243 -118328311 + L1PA13 LINE L1 2179 2788 -4793 1744 165 0 7 chr6 70951266 70951538 -118328016 + AluJb SINE Alu 12 281 -31 530 167 0 0 chr6 70951560 70951662 -118327892 + L1PA13 LINE L1 2778 2879 -4702 3325 15 0 0 chr6 70951663 70952218 -118327336 - L1PA3 LINE L1 -602 5553 4999 5496 19 0 0 chr6 70952218 70952843 -118326711 + L1PA3 LINE L1 5529 6154 -1 12394 248 22 12 chr6 70952850 70955794 -118323760 + L1PA13 LINE L1 2868 5854 -1730 2314 68 13 23 chr6 70955794 70956103 -118323451 + AluY SINE Alu 1 306 -5 12394 248 22 12 chr6 70956103 70956623 -118322931 + L1PA13 LINE L1 5854 6367 -1217 618 170 0 0 chr6 70956623 70956729 -118322825 + AluSg/x SINE Alu 205 310 0 1975 197 131 11 chr6 70956731 70957345 -118322209 + L1M1 LINE L1 1769 2440 -3986 33 43 0 0 chr6 70957443 70957490 -118322064 + AT_rich Low_complexity Low_complexity 1 47 0 834 217 0 17 chr6 70957631 70957811 -118321743 + MER3 DNA MER1_type 1 130 -79 24 53 0 0 chr6 70957937 70957975 -118321579 + AT_rich Low_complexity Low_complexity 1 38 0 276 280 105 67 chr6 70959220 70959459 -118320095 + HAL1b LINE L1 340 587 -761 225 65 0 0 chr6 70960464 70960495 -118319059 + (CA)n Simple_repeat Simple_repeat 2 32 0 227 233 11 67 chr6 70960680 70960770 -118318784 + HAL1b LINE L1 623 707 -641 279 215 46 0 chr6 70961742 70961807 -118317747 - MIR SINE MIR 0 262 195 394 227 8 42 chr6 70961976 70962095 -118317459 + L1ME4a LINE L1 5969 6083 -38 507 350 67 9 chr6 70962903 70963126 -118316428 - MIR SINE MIR -26 236 1 21 0 0 0 chr6 70963233 70963254 -118316300 + AT_rich Low_complexity Low_complexity 1 21 0 1400 280 161 10 chr6 70963274 70963785 -118315769 + MLT2E LTR ERVL 41 628 0 1010 285 25 67 chr6 70963842 70964273 -118315281 - MLT1K LTR MaLR -13 575 163 463 291 14 14 chr6 70965386 70965527 -118314027 + MIR SINE MIR 8 148 -114 957 126 11 77 chr6 70965527 70965709 -118313845 + MER2 DNA MER2_type 1 170 -175 4237 158 14 7 chr6 70965750 70966511 -118313043 + L1MB8 LINE L1 5406 6172 -6 325 319 134 0 chr6 70967247 70967404 -118312150 + MER117 DNA MER1_type 1 178 -19 440 301 107 49 chr6 70967706 70968072 -118311482 + MLT1L LTR MaLR 5 391 -224 2032 200 35 33 chr6 70968329 70968813 -118310741 + LTR45B LTR ERV1 5 489 0 225 65 0 0 chr6 70968819 70968850 -118310704 + (TG)n Simple_repeat Simple_repeat 2 32 0 235 286 107 71 chr6 70968864 70968976 -118310578 - MIR SINE MIR -79 183 68 256 316 86 86 chr6 70969055 70969207 -118310347 - L2 LINE L2 -5 3308 3157 2016 139 0 16 chr6 70969207 70969524 -118310030 + AluSx SINE Alu 1 312 0 256 316 86 86 chr6 70969524 70969801 -118309753 - L2 LINE L2 -155 3158 2879 246 261 292 0 chr6 70969874 70970004 -118309550 - L2 LINE L2 -560 2754 2587 666 320 104 0 chr6 70970005 70970227 -118309327 - Zaphod DNA AcHobo -3639 392 148 2365 104 77 13 chr6 70970676 70971198 -118308356 - MER51A LTR ERV1 0 634 3 204 40 0 0 chr6 70972323 70972348 -118307206 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 252 289 109 23 chr6 70974541 70974669 -118304885 - HAL1 LINE L1 -1070 1437 1299 22 0 0 0 chr6 70975475 70975497 -118304057 + AT_rich Low_complexity Low_complexity 1 22 0 779 176 0 27 chr6 70975526 70975674 -118303880 + Tigger1 DNA MER2_type 23 166 -2252 281 22 152 0 chr6 70975758 70975804 -118303750 + Tigger1 DNA MER2_type 198 250 -2168 * 4368 119 13 53 chr6 70975798 70976316 -118303238 + Tigger1 DNA MER2_type 1695 2175 -243 2101 105 7 14 chr6 70976316 70976612 -118302942 - AluSc SINE Alu -15 294 1 4368 119 13 53 chr6 70976612 70976842 -118302712 + Tigger1 DNA MER2_type 2175 2413 -5 1754 184 83 61 chr6 70977625 70978002 -118301552 - LTR48 LTR ERV1 0 787 419 1924 154 0 37 chr6 70978002 70978326 -118301228 - AluSx SINE Alu 0 312 1 1754 184 83 61 chr6 70978326 70978634 -118300920 - LTR48 LTR ERV1 -368 419 1 24 53 0 0 chr6 70979108 70979146 -118300408 + AT_rich Low_complexity Low_complexity 1 38 0 1682 188 0 25 chr6 70980078 70980397 -118299157 + AluJo SINE Alu 1 311 -1 287 190 0 0 chr6 70982749 70982807 -118296747 + MER53 DNA DNA 1 58 -131 457 161 37 0 chr6 70983090 70983171 -118296383 + MER67D LTR ERV1 5 88 -426 10591 98 9 3 chr6 70983197 70985534 -118294020 - L1PA8 LINE L1 -1 6171 3824 8644 120 14 4 chr6 70985534 70986891 -118292663 + L1PA8 LINE L1 2439 3809 -2337 1267 189 90 90 chr6 70986891 70987257 -118292297 + MER67D LTR ERV1 71 436 -78 226 145 0 145 chr6 70987240 70987302 -118292252 + MER92C LTR ERV1 494 546 -8 * 257 316 13 0 chr6 70987310 70987386 -118292168 - MER5B DNA MER1_type -100 78 2 35 45 0 15 chr6 70987495 70987523 -118292031 + AT_rich Low_complexity Low_complexity 1 28 -38 1552 196 0 7 chr6 70987523 70987803 -118291751 + AluJo SINE Alu 5 282 -30 35 45 0 15 chr6 70987803 70987841 -118291713 + AT_rich Low_complexity Low_complexity 28 66 0 180 271 43 29 chr6 70988143 70988213 -118291341 + L2 LINE L2 3227 3297 -16 6890 184 21 19 chr6 70988428 70990544 -118289010 + L1PA15 LINE L1 4040 6160 -5 181 258 101 11 chr6 70990619 70990708 -118288846 - MIR SINE MIR -68 140 44 389 275 0 0 chr6 70990722 70990802 -118288752 - L2 LINE L2 -2 3270 3191 636 191 53 0 chr6 70990806 70990937 -118288617 - LTR24B LTR ERV1 -17 559 422 * 851 179 34 56 chr6 70990934 70991113 -118288441 - MER20 DNA MER1_type -41 178 4 2293 172 33 14 chr6 70992214 70992638 -118286916 + MSTB1 LTR MaLR 1 432 0 2583 141 29 12 chr6 70994392 70994811 -118284743 - MSTA LTR MaLR 0 428 3 269 324 95 0 chr6 70995264 70995369 -118284185 + MIR SINE MIR 65 179 -83 22 0 0 0 chr6 70995847 70995869 -118283685 + AT_rich Low_complexity Low_complexity 1 22 0 4746 164 10 14 chr6 70996202 70997097 -118282457 - L1MB4 LINE L1 0 6180 5290 264 30 0 0 chr6 70997321 70997354 -118282200 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2399 164 21 7 chr6 70997852 70998272 -118281282 + MSTB LTR MaLR 1 426 0 379 252 49 42 chr6 70998373 70998516 -118281038 - MLT1H LTR MaLR 0 549 406 412 240 12 29 chr6 70998699 70998831 -118280723 - MLT1H LTR MaLR -381 168 1 29 28 0 0 chr6 71000265 71000301 -118279253 + AT_rich Low_complexity Low_complexity 1 36 0 2013 87 59 0 chr6 71000591 71000880 -118278674 - L1PA10 LINE L1 -4 6164 5859 3754 71 12 0 chr6 71000895 71001463 -118278091 + L1P4 LINE L1 5178 5750 -418 4342 67 26 0 chr6 71001604 71002226 -118277328 + L1PA10 LINE L1 5214 5854 -314 316 226 54 121 chr6 71002436 71002750 -118276804 - L1ME4a LINE L1 -77 6044 5752 226 179 15 15 chr6 71002848 71002915 -118276639 + CT-rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr6 71003566 71003590 -118275964 + AT_rich Low_complexity Low_complexity 1 24 0 234 300 239 0 chr6 71003746 71003876 -118275678 - MIR SINE MIR -13 249 89 243 239 28 0 chr6 71004686 71004757 -118274797 + (TA)n Simple_repeat Simple_repeat 2 74 0 4583 139 72 9 chr6 71005245 71005917 -118273637 - L1MA3 LINE L1 0 7724 6987 1810 116 0 0 chr6 71005917 71006167 -118273387 - AluSc SINE Alu -4 305 56 4583 139 72 9 chr6 71006167 71006341 -118273213 - L1MA3 LINE L1 -737 6987 6825 11863 164 17 107 chr6 71006343 71008454 -118271100 - L1MA3 LINE L1 -897 6668 4370 1404 173 15 34 chr6 71008454 71008720 -118270834 - AluJo SINE Alu -29 283 23 11863 164 17 107 chr6 71008720 71009276 -118270278 - L1MA3 LINE L1 -3195 4370 4028 5037 146 72 35 chr6 71009276 71010309 -118269245 + MER11C LTR ERVK 1 1071 0 11863 164 17 107 chr6 71010309 71010493 -118269061 - L1MA3 LINE L1 -3537 4028 3829 * 16819 142 26 3 chr6 71010492 71013110 -118266444 - L1MA3 LINE L1 -4689 2876 198 537 149 4 30 chr6 71013110 71013283 -118266271 + AluJb SINE Alu 1 220 -92 3750 127 53 7 chr6 71013283 71013866 -118265688 - LTR9 LTR ERV1 0 612 3 537 149 4 30 chr6 71013866 71013940 -118265614 + AluJb SINE Alu 220 294 -18 1077 157 22 5 chr6 71013983 71014168 -118265386 - L1MA3 LINE L1 -7366 199 12 21 0 0 0 chr6 71015516 71015537 -118264017 + AT_rich Low_complexity Low_complexity 1 21 0 371 278 76 42 chr6 71016077 71016221 -118263333 - MIR SINE MIR -108 154 6 1824 162 60 42 chr6 71016685 71017068 -118262486 - MLT1B LTR MaLR 0 390 1 1770 171 0 32 chr6 71018782 71019098 -118260456 - AluJb SINE Alu -6 306 1 577 229 25 45 chr6 71019851 71020008 -118259546 + MIR SINE MIR 2 155 -107 2948 21 0 0 chr6 71020023 71020359 -118259195 - L1PA5 LINE L1 -282 5873 5538 2405 32 0 0 chr6 71020359 71020643 -118258911 + L1PA5 LINE L1 5866 6150 -4 244 232 18 0 chr6 71020656 71020712 -118258842 + MIR SINE MIR 196 252 -10 45 45 0 0 chr6 71020780 71020846 -118258708 + AT_rich Low_complexity Low_complexity 1 66 0 2479 68 0 10 chr6 71021603 71021913 -118257641 + AluSq SINE Alu 1 307 -6 22 0 0 0 chr6 71023281 71023303 -118256251 + AT_rich Low_complexity Low_complexity 1 22 0 499 316 99 0 chr6 71024532 71024744 -118254810 - MER20B DNA MER1_type -256 527 295 6033 94 27 0 chr6 71026700 71027040 -118252514 - L1PA13 LINE L1 -2 6161 5832 2162 110 7 3 chr6 71027040 71027340 -118252214 - AluSp SINE Alu -12 301 1 6033 94 27 0 chr6 71027340 71027988 -118251566 - L1PA13 LINE L1 -331 5832 5179 217 344 25 25 chr6 71028926 71029048 -118250506 + MIR SINE MIR 20 141 -67 201 94 0 0 chr6 71029561 71029593 -118249961 + (CA)n Simple_repeat Simple_repeat 2 33 0 1725 201 22 11 chr6 71029605 71029964 -118249590 + MLT1A1 LTR MaLR 1 363 -2 859 218 37 102 chr6 71030004 71030298 -118249256 - MER20B DNA MER1_type -508 275 1 243 88 0 0 chr6 71031286 71031320 -118248234 + (CATA)n Simple_repeat Simple_repeat 2 35 0 14625 130 25 21 chr6 71031385 71033783 -118245771 - Tigger1 DNA MER2_type 0 2418 11 25 0 0 0 chr6 71034930 71034955 -118244599 + AT_rich Low_complexity Low_complexity 1 25 0 647 273 58 6 chr6 71034965 71035137 -118244417 + MIR SINE MIR 12 192 -70 893 163 39 28 chr6 71035137 71035315 -118244239 + AluJo SINE Alu 122 301 -11 1519 77 5 14 chr6 71035555 71035762 -118243792 - AluSg SINE Alu -105 205 1 22 0 0 0 chr6 71036513 71036535 -118243019 + AT_rich Low_complexity Low_complexity 1 22 0 255 184 204 20 chr6 71036583 71036681 -118242873 + MLT1K LTR MaLR 374 489 -99 368 154 0 109 chr6 71036839 71037243 -118242311 + (TATAA)n Simple_repeat Simple_repeat 1 359 0 244 174 0 109 chr6 71037263 71037872 -118241682 + (TATAA)n Simple_repeat Simple_repeat 1 542 0 31 92 0 0 chr6 71037887 71037974 -118241580 + AT_rich Low_complexity Low_complexity 1 87 0 291 158 0 114 chr6 71037993 71038195 -118241359 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 29 0 0 0 chr6 71038203 71038232 -118241322 + AT_rich Low_complexity Low_complexity 1 29 0 201 271 229 8 chr6 71038416 71038534 -118241020 + MIR SINE MIR 48 191 -71 183 244 0 0 chr6 71039168 71039213 -118240341 + MIR SINE MIR 218 262 0 2761 203 104 55 chr6 71041068 71041738 -118237816 + MER44D DNA MER2_type 1 575 -30 25 31 0 0 chr6 71041748 71041780 -118237774 + AT_rich Low_complexity Low_complexity 1 32 0 1242 239 132 55 chr6 71041939 71042408 -118237146 - MLT1D LTR MaLR 0 505 1 25 0 0 0 chr6 71042620 71042645 -118236909 + AT_rich Low_complexity Low_complexity 1 25 0 567 328 81 72 chr6 71043458 71044015 -118235539 - L2 LINE L2 0 3272 2701 201 159 29 72 chr6 71044167 71044236 -118235318 + T-rich Low_complexity Low_complexity 3 68 0 903 146 18 12 chr6 71044237 71044402 -118235152 - L1MB1 LINE L1 -1 6167 6002 437 271 37 0 chr6 71044422 71044529 -118235025 - L2 LINE L2 -593 2721 2611 701 329 42 0 chr6 71045802 71046039 -118233515 + MIR SINE MIR 5 251 -11 25 51 0 0 chr6 71046245 71046284 -118233270 + AT_rich Low_complexity Low_complexity 1 39 0 2065 164 23 3 chr6 71046989 71047343 -118232211 - MLT1A1 LTR MaLR -4 361 1 189 0 0 0 chr6 71048303 71048324 -118231230 + (TCTCCC)n Simple_repeat Simple_repeat 2 22 0 9027 94 12 59 chr6 71048325 71049730 -118229824 + SVA Other Other 48 1386 0 192 302 31 54 chr6 71049799 71049910 -118229644 - MIR SINE MIR -52 156 47 468 363 5 21 chr6 71054908 71055098 -118224456 + MIR3 SINE MIR 17 203 -5 905 88 0 0 chr6 71055442 71055567 -118223987 - THE1A-int LTR MaLR -1453 127 3 246 94 0 0 chr6 71055569 71055601 -118223953 - THE1A LTR MaLR 0 355 324 4098 185 71 72 chr6 71056305 71058479 -118221075 - L1 LINE L1 -2724 4124 1957 2593 178 7 0 chr6 71058487 71058947 -118220607 - L1 LINE L1 -5090 1759 1297 21 0 0 0 chr6 71061716 71061737 -118217817 + AT_rich Low_complexity Low_complexity 1 21 0 248 294 19 62 chr6 71062065 71062225 -118217329 - HAL1b LINE L1 -445 903 751 357 273 140 49 chr6 71062797 71062940 -118216614 - HAL1 LINE L1 -592 1915 1760 254 271 128 23 chr6 71063269 71063402 -118216152 - HAL1 LINE L1 -2318 189 43 38 22 0 0 chr6 71063422 71063467 -118216087 + AT_rich Low_complexity Low_complexity 1 45 0 259 353 98 17 chr6 71063500 71063673 -118215881 - MIR SINE MIR -74 188 2 2181 139 0 0 chr6 71063739 71064049 -118215505 + AluSg SINE Alu 1 310 0 36 40 0 0 chr6 71064251 71064301 -118215253 + AT_rich Low_complexity Low_complexity 1 50 0 311 264 168 12 chr6 71064718 71064885 -118214669 - L2 LINE L2 -2 3311 3119 220 282 42 0 chr6 71064883 71064954 -118214600 + MIR SINE MIR 151 224 -38 * 15721 41 5 0 chr6 71065067 71067752 -118211802 + L1PA4 LINE L1 3463 6155 0 688 258 42 6 chr6 71068205 71068372 -118211182 - MER45A DNA AcHobo -5 173 1 699 234 74 47 chr6 71068685 71069215 -118210339 + LTR48B LTR ERV1 1 633 -11 384 332 32 27 chr6 71069244 71069431 -118210123 - MIR SINE MIR -72 190 3 203 358 0 12 chr6 71069514 71069595 -118209959 - L2 LINE L2 0 3272 3193 292 129 0 32 chr6 71069762 71069824 -118209730 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 593 248 14 71 chr6 71069863 71069956 -118209598 + MIR SINE MIR 65 162 -100 2845 159 10 90 chr6 71069956 71070558 -118208996 + MLT2B3 LTR ERVL 1 554 0 593 248 14 71 chr6 71070558 71070625 -118208929 + MIR SINE MIR 162 213 -49 1954 164 118 0 chr6 71070625 71071008 -118208546 - MSTA LTR MaLR 0 428 1 593 248 14 71 chr6 71071008 71071056 -118208498 + MIR SINE MIR 213 262 0 763 332 33 62 chr6 71072975 71073424 -118206130 + L3 LINE CR1 1139 1574 -3 277 240 40 0 chr6 71073668 71073743 -118205811 - L1MC4 LINE L1 -1339 6703 6626 309 309 56 28 chr6 71073828 71074006 -118205548 + MER5A DNA MER1_type 1 183 -6 770 310 109 54 chr6 71074454 71074692 -118204862 - MLT1K LTR MaLR 0 588 365 1457 166 212 33 chr6 71074692 71075083 -118204471 + LOR1b LTR ERV1 1 461 0 770 310 109 54 chr6 71075083 71075366 -118204188 - MLT1K LTR MaLR -223 365 38 343 345 96 0 chr6 71076462 71076639 -118202915 - MIR SINE MIR -41 221 28 321 317 84 12 chr6 71076711 71076878 -118202676 - MIR SINE MIR -79 183 5 21 57 0 0 chr6 71077694 71077729 -118201825 + AT_rich Low_complexity Low_complexity 1 35 0 1222 103 66 9 chr6 71077733 71077946 -118201608 + L1MB4 LINE L1 5956 6180 0 234 367 49 39 chr6 71078094 71078380 -118201174 + HAL1 LINE L1 755 1043 -1464 551 248 141 24 chr6 71078410 71078708 -118200846 + HAL1 LINE L1 1132 1464 -1043 1971 204 79 15 chr6 71078727 71079402 -118200152 + L1MB7 LINE L1 5280 6037 -147 5320 154 41 2 chr6 71079417 71080512 -118199042 - L1PA16 LINE L1 -9 6157 5023 * 43477 44 2 2 chr6 71080511 71086635 -118192919 - L1PA4 LINE L1 -26 6129 7 6097 203 15 32 chr6 71086638 71088149 -118191405 - L1 LINE L1 -1118 5028 3544 1318 100 35 0 chr6 71088249 71088449 -118191105 + L1P4 LINE L1 5279 5485 -676 2280 95 0 7 chr6 71088450 71088755 -118190799 + AluSx SINE Alu 2 304 -8 1916 223 80 62 chr6 71088972 71089081 -118190473 + MER82 DNA MER2_type 79 185 -468 2107 112 0 43 chr6 71089081 71089385 -118190169 + AluSx SINE Alu 1 291 -21 1916 223 80 62 chr6 71089385 71089840 -118189714 + MER82 DNA MER2_type 185 653 0 946 157 16 54 chr6 71090303 71090488 -118189066 - FAM SINE Alu 0 49 1 427 252 50 8 chr6 71090549 71090668 -118188886 + MLT1G1 LTR MaLR 16 139 -456 2264 123 22 8 chr6 71090767 71091126 -118188428 + THE1B LTR MaLR 1 364 0 2062 110 23 0 chr6 71091127 71091436 -118188118 + THE1B-int LTR MaLR 2 317 -1263 1817 221 44 38 chr6 71091806 71092308 -118187246 + MLT1D LTR MaLR 1 505 0 746 213 45 10 chr6 71092688 71092937 -118186617 - MLT2B3 LTR ERVL -106 448 190 204 188 0 0 chr6 71092939 71092971 -118186583 + (CATG)n Simple_repeat Simple_repeat 3 34 0 703 333 42 16 chr6 71092971 71093280 -118186274 - L1ME3A LINE L1 -226 5944 5645 2067 211 40 94 chr6 71093280 71093686 -118185868 + LTR8 LTR ERV1 1 428 -263 198 71 0 0 chr6 71093686 71093714 -118185840 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1475 90 49 27 chr6 71093724 71093947 -118185607 + AluSg/x SINE Alu 85 312 0 2067 211 40 94 chr6 71093947 71094260 -118185294 + LTR8 LTR ERV1 437 691 0 703 333 42 16 chr6 71094260 71094374 -118185180 - L1ME3A LINE L1 -525 5645 5510 2634 102 11 5 chr6 71094616 71094989 -118184565 + THE1C LTR MaLR 1 375 0 509 179 104 0 chr6 71095293 71095399 -118184155 - MER99 DNA DNA -3 825 709 957 217 8 13 chr6 71095410 71095661 -118183893 + MLT1D LTR MaLR 6 182 -323 807 159 249 10 chr6 71095663 71095864 -118183690 + MSTA LTR MaLR 180 428 0 2751 124 0 0 chr6 71095866 71096269 -118183285 + MSTA-int LTR MaLR 3 405 -1175 1291 111 0 0 chr6 71096282 71096453 -118183101 - AluSg/x SINE Alu -2 310 140 3874 179 25 4 chr6 71096514 71097201 -118182353 + MSTA-int LTR MaLR 417 1117 -463 1458 90 0 5 chr6 71097201 71097389 -118182165 + AluSq SINE Alu 110 296 -17 247 366 20 10 chr6 71097405 71097506 -118182048 + MIR SINE MIR 20 121 -87 22 0 0 0 chr6 71097597 71097619 -118181935 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 71097676 71097705 -118181849 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 71097931 71097952 -118181602 + AT_rich Low_complexity Low_complexity 1 21 0 302 214 114 0 chr6 71098000 71098070 -118181484 + MER21B LTR ERV1 497 574 -289 2188 102 10 3 chr6 71098407 71098702 -118180852 - AluSg SINE Alu -13 297 1 323 169 0 34 chr6 71098747 71098806 -118180748 + AluS SINE Alu 1 57 -243 13019 50 5 0 chr6 71298859 71301184 -117978370 - L1PA4 LINE L1 -24 6131 3800 4146 54 4 0 chr6 71301359 71301879 -117977675 - L1PA4 LINE L1 -2355 3791 3270 2109 181 131 13 chr6 71301879 71303506 -117976048 - SATR1 Satellite Satellite -3 1819 1 2276 191 107 4 chr6 71303534 71304279 -117975275 - SATR1 Satellite Satellite -4 821 1 3982 47 0 0 chr6 71304301 71305066 -117974488 - L1P2 LINE L1 -508 5647 4883 2500 188 117 21 chr6 71305188 71308285 -117971269 + SATR1 Satellite Satellite 1 3393 0 2286 174 120 18 chr6 71308313 71312583 -117966971 - SATR1 Satellite Satellite -1 4701 1 3337 58 2 14 chr6 71312684 71313101 -117966453 + L1PA4 LINE L1 5744 6155 0 2469 207 94 22 chr6 71313112 71315559 -117963995 + SATR1 Satellite Satellite 1 2622 0 2410 197 104 16 chr6 71315587 71318353 -117961201 - SATR1 Satellite Satellite -146 3010 1 2258 140 121 34 chr6 71318366 71319429 -117960125 + SATR1 Satellite Satellite 1 1154 -95 1249 145 15 0 chr6 71319539 71319739 -117959815 - AluSq SINE Alu -94 219 17 1829 209 114 16 chr6 71319741 71320893 -117958661 + SATR1 Satellite Satellite 1 1265 0 2176 187 86 39 chr6 71320920 71322031 -117957523 + SATR1 Satellite Satellite 1 1162 -14 1843 169 23 17 chr6 71322138 71322488 -117957066 + MER89 LTR ERV1 208 559 0 682 172 62 21 chr6 71322543 71322688 -117956866 - L1MB8 LINE L1 0 6178 6028 337 329 48 55 chr6 71322699 71323097 -117956457 + L1PA13 LINE L1 1003 1397 -6177 278 375 0 0 chr6 71323212 71323308 -117956246 + L1PA13 LINE L1 2087 2182 -5399 11681 258 29 45 chr6 71323550 71327887 -117951667 + L1PA13 LINE L1 2182 6465 -1119 37009 54 4 30 chr6 71327891 71332717 -117946837 + L1P LINE L1 7 4707 -1439 27477 68 2 2 chr6 71332827 71336353 -117943201 - L1P LINE L1 -2622 3524 1 2536 181 108 11 chr6 71336692 71342198 -117937356 - SATR1 Satellite Satellite -144 6039 1 2332 177 101 28 chr6 71342216 71345067 -117934487 + SATR1 Satellite Satellite 1 3058 -142 13806 42 1 0 chr6 71345646 71348001 -117931553 - L1PA3 LINE L1 -3 6152 3795 2667 150 110 10 chr6 71348102 71349589 -117929965 - SATR1 Satellite Satellite -3 3171 1834 2050 133 0 0 chr6 71349589 71349883 -117929671 + AluSg SINE Alu 1 294 -16 2667 150 110 10 chr6 71349883 71350986 -117928568 - SATR1 Satellite Satellite -1340 1834 1 34 55 0 0 chr6 71352276 71352331 -117927223 + AT_rich Low_complexity Low_complexity 1 55 0 3138 159 11 60 chr6 71352572 71353193 -117926361 + MER6A DNA MER2_type 1 591 -14 837 148 7 0 chr6 71353236 71353371 -117926183 + L1M2 LINE L1 10 145 -6704 2613 171 7 0 chr6 71353974 71354408 -117925146 + L1PA12 LINE L1 1694 2130 -5451 1906 183 110 33 chr6 71354427 71355791 -117923763 + SATR1 Satellite Satellite 1 1470 -25 488 353 11 21 chr6 71357864 71358051 -117921503 + MIR3 SINE MIR 19 203 -5 923 72 0 0 chr6 71358394 71358519 -117921035 - THE1A-int LTR MaLR -1453 127 3 246 94 0 0 chr6 71358521 71358553 -117921001 - THE1A LTR MaLR 0 355 324 3283 230 75 72 chr6 71359265 71361418 -117918136 - L1PA15-16 LINE L1 -2724 4125 2042 2655 167 7 0 chr6 71361426 71361886 -117917668 - L1M2 LINE L1 -5090 1759 1297 288 253 0 38 chr6 71361884 71361963 -117917591 - L1ME1 LINE L1 -5 6161 6086 * 183 42 0 0 chr6 71364479 71364503 -117915051 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 298 258 253 21 chr6 71364752 71364946 -117914608 - HAL1 LINE L1 -592 1915 1677 38 22 0 0 chr6 71365377 71365422 -117914132 + AT_rich Low_complexity Low_complexity 1 45 0 263 353 98 17 chr6 71365455 71365628 -117913926 - MIR SINE MIR -74 188 2 2090 147 7 0 chr6 71365694 71366001 -117913553 + AluSg SINE Alu 1 309 -1 47 19 0 0 chr6 71366202 71366256 -117913298 + AT_rich Low_complexity Low_complexity 1 54 0 275 252 89 16 chr6 71366715 71366838 -117912716 - L2 LINE L2 -63 3250 3119 238 268 42 0 chr6 71366836 71366907 -117912647 + MIR SINE MIR 151 224 -38 * 15623 38 5 0 chr6 71367020 71369701 -117909853 + L1PA4 LINE L1 3463 6151 -4 714 251 42 6 chr6 71370154 71370321 -117909233 - MER45A DNA AcHobo -5 173 1 618 235 87 45 chr6 71370636 71371166 -117908388 + LTR48B LTR ERV1 1 631 -13 319 353 32 27 chr6 71371196 71371383 -117908171 - MIR SINE MIR -72 190 3 215 346 0 12 chr6 71371466 71371547 -117908007 - L2 LINE L2 0 3272 3193 22 0 0 0 chr6 71371601 71371623 -117907931 + AT_rich Low_complexity Low_complexity 1 22 0 217 177 0 32 chr6 71371727 71371789 -117907765 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 622 248 20 55 chr6 71371828 71371916 -117907638 + MIR SINE MIR 65 155 -107 2832 161 10 90 chr6 71371916 71372518 -117907036 + MLT2B3 LTR ERVL 1 554 0 622 248 20 55 chr6 71372518 71372585 -117906969 + MIR SINE MIR 155 214 -48 2009 157 118 0 chr6 71372585 71372968 -117906586 - MSTA LTR MaLR 0 428 1 622 248 20 55 chr6 71372968 71373013 -117906541 + MIR SINE MIR 214 259 -3 433 324 66 19 chr6 71374939 71375152 -117904402 + L3 LINE CR1 1139 1361 -216 6073 238 35 56 chr6 71375569 71376570 -117902984 - L1P3 LINE L1 -3692 2769 1748 1933 146 10 7 chr6 71376570 71376872 -117902682 - AluSx SINE Alu -9 303 1 6073 238 35 56 chr6 71376872 71378665 -117900889 - L1P3 LINE L1 -4713 1748 2 2357 141 24 24 chr6 71379053 71379479 -117900075 - L1M2 LINE L1 -530 5782 5357 894 256 4 4 chr6 71379483 71379682 -117899872 + L1 LINE L1 5098 5299 -847 207 0 0 0 chr6 71379682 71379705 -117899849 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 894 256 4 4 chr6 71379705 71379767 -117899787 + L1 LINE L1 5298 5359 -787 300 217 14 0 chr6 71379767 71379836 -117899718 + MER67D LTR ERV1 442 511 -3 718 315 124 22 chr6 71379841 71380235 -117899319 + L2 LINE L2 2625 3088 -225 2448 167 88 6 chr6 71380235 71380702 -117898852 + MLT1D LTR MaLR 1 505 0 718 315 124 22 chr6 71380702 71380872 -117898682 + L2 LINE L2 3088 3239 -74 261 323 30 60 chr6 71381129 71381262 -117898292 + MLT1I LTR MaLR 112 240 -169 967 225 11 0 chr6 71381885 71382072 -117897482 - MER58A DNA MER1_type 0 224 36 1797 198 25 14 chr6 71382182 71382220 -117897334 - MLT2C1 LTR ERVL -7 407 371 252 0 0 0 chr6 71382220 71382248 -117897306 + (CA)n Simple_repeat Simple_repeat 2 29 0 3180 201 26 9 chr6 71382249 71382890 -117896664 + MER82 DNA MER2_type 1 652 -1 1797 198 25 14 chr6 71382890 71383254 -117896300 - MLT2C1 LTR ERVL -42 372 1 230 172 23 81 chr6 71383288 71383375 -117896179 + L1MC5 LINE L1 7665 7746 -215 1271 246 180 42 chr6 71383532 71384053 -117895501 - MLT1E LTR MaLR 0 593 1 29 0 0 0 chr6 71384225 71384254 -117895300 + AT_rich Low_complexity Low_complexity 1 29 0 414 363 65 19 chr6 71384460 71384769 -117894785 - L1MDb LINE L1 -5173 1236 914 225 167 0 37 chr6 71385509 71385563 -117893991 + (TTTAA)n Simple_repeat Simple_repeat 5 56 0 25 0 0 0 chr6 71385579 71385604 -117893950 + AT_rich Low_complexity Low_complexity 1 25 0 352 326 81 26 chr6 71385625 71385935 -117893619 - L1MEc LINE L1 -847 1729 1389 340 354 128 7 chr6 71386094 71386382 -117893172 - L1M2 LINE L1 -4631 2218 1896 629 293 124 9 chr6 71386429 71386654 -117892900 + MIR SINE MIR 10 260 -2 430 333 133 14 chr6 71386663 71387168 -117892386 - L1MEc LINE L1 -5251 954 390 980 189 0 14 chr6 71388069 71388305 -117891249 - L1M2 LINE L1 -744 6821 6654 2245 178 28 5 chr6 71388305 71388727 -117890827 + MSTB1 LTR MaLR 1 432 0 6614 208 98 17 chr6 71388729 71390256 -117889298 + MSTB1-int LTR MaLR 2 1651 0 2018 183 14 6 chr6 71390260 71390610 -117888944 + MSTB1 LTR MaLR 5 357 -75 3928 241 44 41 chr6 71390711 71391020 -117888534 - L1M2 LINE L1 -3335 4230 3924 2339 101 3 0 chr6 71391020 71391328 -117888226 - AluY SINE Alu -2 309 1 3928 241 44 41 chr6 71391328 71393191 -117886363 - L1M2 LINE L1 -3641 3924 2039 3192 185 24 6 chr6 71393188 71393400 -117886154 + L1 LINE L1 4528 4735 -1411 * 2362 152 30 28 chr6 71393400 71393833 -117885721 - Tigger2a DNA MER2_type 0 434 1 3192 185 24 6 chr6 71393833 71394286 -117885268 + L1 LINE L1 4735 5205 -941 1326 174 14 7 chr6 71394477 71394758 -117884796 + Charlie1 DNA MER1_type 2346 2628 -133 45 0 0 0 chr6 71394770 71394815 -117884739 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr6 71394907 71394930 -117884624 + AT_rich Low_complexity Low_complexity 1 23 0 748 163 0 0 chr6 71394930 71395053 -117884501 + Charlie1 DNA MER1_type 2639 2761 0 3137 200 19 36 chr6 71395108 71395453 -117884101 - L1M4 LINE L1 -963 5183 4834 1711 158 7 4 chr6 71395453 71395732 -117883822 + AluSx SINE Alu 21 300 -12 3137 200 19 36 chr6 71395732 71396141 -117883413 - L1M4 LINE L1 -1312 4834 4442 1678 198 91 13 chr6 71397641 71398036 -117881518 + MSTC LTR MaLR 3 428 0 2370 176 93 32 chr6 71398828 71399456 -117880098 - SATR1 Satellite Satellite 0 2781 2193 1837 157 0 4 chr6 71399456 71399737 -117879817 + AluSx SINE Alu 15 294 -18 2370 176 93 32 chr6 71399737 71401449 -117878105 - SATR1 Satellite Satellite -588 2193 1 234 150 0 0 chr6 71401756 71401796 -117877758 + (CA)n Simple_repeat Simple_repeat 2 41 0 255 309 43 35 chr6 71401935 71402081 -117877473 + MER5A DNA MER1_type 26 183 -6 753 308 109 54 chr6 71402529 71402767 -117876787 - MLT1K LTR MaLR 0 588 365 1406 170 216 28 chr6 71402767 71403155 -117876399 + LOR1b LTR ERV1 1 461 0 753 308 109 54 chr6 71403155 71403438 -117876116 - MLT1K LTR MaLR -223 365 38 315 350 96 0 chr6 71404427 71404604 -117874950 - MIR SINE MIR -41 221 28 391 292 148 14 chr6 71404627 71404843 -117874711 - MIR SINE MIR -13 249 5 384 77 0 0 chr6 71405660 71405712 -117873842 + (TA)n Simple_repeat Simple_repeat 1 52 0 1184 136 56 0 chr6 71405730 71405943 -117873611 + L1MB4 LINE L1 5956 6180 0 229 393 21 14 chr6 71406091 71406231 -117873323 + HAL1 LINE L1 755 895 -1612 239 336 156 8 chr6 71407107 71407229 -117872325 - MIR SINE MIR -115 147 8 517 292 65 0 chr6 71407712 71407880 -117871674 - MIR SINE MIR -2 260 82 408 293 49 68 chr6 71407883 71407953 -117871601 + LTR33 LTR ERVL 2 72 -449 766 268 0 22 chr6 71407953 71408132 -117871422 + MER45A DNA AcHobo 4 178 0 408 293 49 68 chr6 71408132 71408266 -117871288 + LTR33 LTR ERVL 72 202 -319 476 253 33 13 chr6 71408358 71408508 -117871046 + LTR33 LTR ERVL 367 519 -2 29169 42 1 0 chr6 71409605 71413231 -117866323 + L1P LINE L1 1667 5294 -852 8171 148 21 42 chr6 71413331 71415688 -117863866 - L1P3 LINE L1 -4049 2412 1 1999 115 23 39 chr6 71415703 71416008 -117863546 - AluSx SINE Alu -12 300 1 2828 78 5 3 chr6 71416582 71416966 -117862588 - L1PA6 LINE L1 0 6154 5770 318 50 0 0 chr6 71416968 71417008 -117862546 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 6044 32 3 0 chr6 71417008 71417726 -117861828 - L1PA3 LINE L1 -10 6145 5426 24147 65 7 16 chr6 71417726 71420932 -117858622 - L1P LINE L1 -2970 3176 2 21328 52 2 2 chr6 71420919 71423666 -117855888 - L1PA6 LINE L1 -771 5375 2629 * 238 305 24 37 chr6 71424498 71424580 -117854974 + MER5B DNA MER1_type 96 176 -2 22 35 0 0 chr6 71428265 71428294 -117851260 + AT_rich Low_complexity Low_complexity 1 29 0 22 88 0 0 chr6 71428495 71428552 -117851002 + AT_rich Low_complexity Low_complexity 1 57 0 242 319 90 35 chr6 71429811 71429955 -117849599 - L2 LINE L2 -194 3078 2927 2441 59 0 47 chr6 71429979 71430299 -117849255 + AluY SINE Alu 1 305 -6 285 325 79 61 chr6 71430392 71430620 -117848934 - L2 LINE L2 -589 2725 2494 1612 125 8 0 chr6 71431275 71431531 -117848023 - MSTA-int LTR MaLR -1393 258 1 2112 142 129 5 chr6 71431531 71431912 -117847642 - MSTA LTR MaLR 0 428 1 540 324 30 15 chr6 71431923 71432228 -117847326 - MLT1J2 LTR MaLR -83 367 24 9078 143 79 21 chr6 71432230 71433829 -117845725 - Tigger2 DNA MER2_type 0 2718 1027 640 177 128 29 chr6 71433826 71434069 -117845485 + Charlie5 DNA MER1_type 2351 2617 0 * 22 80 0 0 chr6 71434192 71434242 -117845312 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr6 71434591 71434615 -117844939 + AT_rich Low_complexity Low_complexity 1 24 0 14514 91 4 2 chr6 71434633 71436602 -117842952 + L1P LINE L1 14 1986 -4160 22 0 0 0 chr6 71436884 71436906 -117842648 + AT_rich Low_complexity Low_complexity 1 22 0 254 308 45 35 chr6 71437258 71437456 -117842098 - L1M4 LINE L1 -1449 4697 4498 26 50 0 0 chr6 71437936 71437976 -117841578 + AT_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr6 71438617 71438643 -117840911 + AT_rich Low_complexity Low_complexity 1 26 0 195 129 0 0 chr6 71438912 71438943 -117840611 + (T)n Simple_repeat Simple_repeat 1 31 0 895 267 77 47 chr6 71439046 71439503 -117840051 + MER77 LTR ERV1 215 668 -8 183 269 19 19 chr6 71439604 71439656 -117839898 - L2 LINE L2 0 3313 3262 2016 25 16 4 chr6 71440353 71440596 -117838958 - L1PA3 LINE L1 -2 6153 5908 449 92 0 0 chr6 71441354 71441419 -117838135 + L1PA3 LINE L1 6088 6152 -3 593 332 54 21 chr6 71442005 71442246 -117837308 - MIR SINE MIR -8 254 6 272 172 0 0 chr6 71442429 71442487 -117837067 + (TA)n Simple_repeat Simple_repeat 2 59 0 854 90 0 0 chr6 71442489 71442600 -117836954 - AluSg/x SINE Alu -22 288 178 203 385 13 0 chr6 71443490 71443568 -117835986 - L2 LINE L2 -41 3272 3194 21 36 0 0 chr6 71444453 71444481 -117835073 + AT_rich Low_complexity Low_complexity 1 28 0 283 353 35 24 chr6 71447792 71447978 -117831576 + MIR SINE MIR 18 206 -56 188 286 0 0 chr6 71448209 71448258 -117831296 - L2 LINE L2 -2 3270 3222 260 397 72 13 chr6 71448733 71448970 -117830584 + MIR SINE MIR 3 253 -9 2473 118 53 67 chr6 71449063 71449497 -117830057 - MSTA LTR MaLR 0 428 1 284 311 89 11 chr6 71449596 71449686 -117829868 - MIR SINE MIR -154 108 12 204 262 66 42 chr6 71450350 71450446 -117829108 + MIR SINE MIR 69 174 -66 682 249 117 84 chr6 71451765 71452230 -117827324 - MLT1H LTR MaLR -34 515 1 442 325 83 27 chr6 71453045 71453654 -117825900 + L1ME3 LINE L1 5280 5837 -325 22 0 0 0 chr6 71453939 71453961 -117825593 + AT_rich Low_complexity Low_complexity 1 22 0 233 231 0 0 chr6 71454305 71454357 -117825197 - L1MC/D LINE L1 -1922 5886 5835 29676 121 18 54 chr6 71454927 71461320 -117818234 - L1PA7 LINE L1 0 6154 2 1999 115 23 39 chr6 71461334 71461639 -117817915 - AluSx SINE Alu -12 300 1 2828 78 5 3 chr6 71462213 71462597 -117816957 - L1PA6 LINE L1 0 6154 5770 318 50 0 0 chr6 71462599 71462639 -117816915 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 7419 29 0 0 chr6 71462639 71464209 -117815345 - L1PA3 LINE L1 -10 6145 4573 15689 33 4 1 chr6 71464209 71466134 -117813420 + L1PA3 LINE L1 2643 4573 -1573 340 219 123 2 chr6 71466534 71466688 -117812866 - MER20 DNA MER1_type -15 204 1 405 256 62 102 chr6 71467071 71467345 -117812209 - MLT1J LTR MaLR -140 371 109 323 326 69 17 chr6 71467524 71467699 -117811855 - MIR SINE MIR -7 255 72 190 286 61 82 chr6 71468527 71468615 -117810939 + L3 LINE CR1 889 974 -603 4341 226 16 29 chr6 71468615 71469669 -117809885 - MER45B DNA AcHobo 0 1040 1 190 286 61 82 chr6 71469669 71469727 -117809827 + L3 LINE CR1 974 1032 -545 22 0 0 0 chr6 71469761 71469783 -117809771 + AT_rich Low_complexity Low_complexity 1 22 0 1634 90 0 5 chr6 71470619 71470830 -117808724 + AluSc SINE Alu 79 288 -21 237 200 0 31 chr6 71471277 71471342 -117808212 - MLT2C1 LTR ERVL -2 395 333 285 157 24 36 chr6 71471343 71471426 -117808128 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 2103 207 7 12 chr6 71471439 71471850 -117807704 - MLT2C2 LTR ERVL -55 409 1 215 287 85 21 chr6 71472046 71472140 -117807414 - L2 LINE L2 -946 2368 2269 26 0 0 49 chr6 71473361 71473385 -117806169 + AT_rich Low_complexity Low_complexity 1 24 -15 968 169 16 0 chr6 71473385 71473574 -117805980 - L1MA5A LINE L1 -5 6292 6101 26 0 0 49 chr6 71473574 71473590 -117805964 + AT_rich Low_complexity Low_complexity 24 39 0 183 205 0 0 chr6 71473784 71473823 -117805731 + (CA)n Simple_repeat Simple_repeat 2 40 0 201 387 21 0 chr6 71474009 71474102 -117805452 + L2 LINE L2 3214 3308 -5 28 29 0 0 chr6 71474419 71474454 -117805100 + AT_rich Low_complexity Low_complexity 1 35 0 1445 251 77 2 chr6 71474866 71475269 -117804285 + HsTC2 DNA Tc2 81 513 -1385 1153 216 82 38 chr6 71475241 71475691 -117803863 + HsTC2 DNA Tc2 1243 1888 -10 * 243 88 0 0 chr6 71476917 71476951 -117802603 + (CA)n Simple_repeat Simple_repeat 2 35 0 1599 190 0 14 chr6 71476959 71477248 -117802306 - AluJb SINE Alu -27 285 1 222 346 173 0 chr6 71478757 71478861 -117800693 + L2 LINE L2 1714 1835 -1479 787 244 69 52 chr6 71478866 71479214 -117800340 - L1MC4 LINE L1 -1 8041 7688 1766 212 12 7 chr6 71479263 71479668 -117799886 - L1M4 LINE L1 -1763 4383 3977 968 246 55 67 chr6 71479677 71480080 -117799474 + MLT1C LTR MaLR 68 465 -2 2992 249 74 63 chr6 71480080 71480819 -117798735 - L1M4 LINE L1 -2163 3983 3254 759 34 0 0 chr6 71480819 71480940 -117798614 + L1PA3 LINE L1 6050 6170 0 2992 249 74 63 chr6 71480940 71481735 -117797819 - L1M4 LINE L1 -2892 3254 2431 237 284 61 27 chr6 71481815 71481963 -117797591 - L1MC5 LINE L1 -51 7910 7758 590 255 50 46 chr6 71482171 71482224 -117797330 - L1MC5 LINE L1 -392 7569 7518 307 333 16 0 chr6 71482224 71482353 -117797201 + MER94 DNA DNA 1 131 -3 590 255 50 46 chr6 71482353 71482558 -117796996 - L1MC5 LINE L1 -443 7518 7310 260 267 48 75 chr6 71482594 71482802 -117796752 - L1MC4 LINE L1 -576 7466 7254 1711 147 72 31 chr6 71482802 71483162 -117796392 - THE1C LTR MaLR 0 375 1 260 267 48 75 chr6 71483162 71483366 -117796188 - L1MC4 LINE L1 -788 7254 6983 22 35 0 0 chr6 71483508 71483537 -117796017 + AT_rich Low_complexity Low_complexity 1 29 0 2068 143 125 10 chr6 71484762 71485146 -117794408 + MSTA LTR MaLR 1 428 0 431 293 153 0 chr6 71485984 71486141 -117793413 + MER5A DNA MER1_type 9 189 0 492 224 0 0 chr6 71486322 71486420 -117793134 - FLAM_A SINE Alu -20 122 25 6080 31 3 0 chr6 71486720 71487439 -117792115 - L1PA3 LINE L1 -9 6146 5426 24147 65 7 16 chr6 71487439 71490645 -117788909 - L1P LINE L1 -2970 3176 2 21351 52 2 2 chr6 71490632 71493379 -117786175 - L1P LINE L1 -771 5375 2629 * 238 305 24 37 chr6 71494211 71494293 -117785261 + MER5B DNA MER1_type 96 176 -2 21 0 0 0 chr6 71496735 71496756 -117782798 + AT_rich Low_complexity Low_complexity 1 21 0 678 283 145 44 chr6 71497874 71499550 -117780004 + HAL1 LINE L1 378 2344 -163 21 57 0 0 chr6 71499768 71499803 -117779751 + AT_rich Low_complexity Low_complexity 1 35 0 242 271 51 0 chr6 71500613 71500672 -117778882 - MIR SINE MIR -109 99 38 1848 189 70 61 chr6 71500804 71501349 -117778205 + LTR49 LTR ERV1 1 550 -45 843 224 73 56 chr6 71501696 71501982 -117777572 + LTR49-int LTR ERV1 999 1289 -5042 548 184 0 18 chr6 71502027 71502141 -117777413 + LTR49-int LTR ERV1 1290 1401 -4930 4394 21 1 0 chr6 71502230 71502828 -117776726 - L1P1 LINE L1 -388 5767 5169 8013 167 42 38 chr6 71502828 71504702 -117774852 + LTR49-int LTR ERV1 4450 6330 -1 1369 163 68 131 chr6 71504703 71505274 -117774280 + LTR49 LTR ERV1 6 540 -55 1071 300 76 10 chr6 71506147 71506634 -117772920 - LTR33A LTR ERVL -2 521 3 1039 207 91 42 chr6 71506668 71507225 -117772329 - LTR48 LTR ERV1 -74 713 1 2536 158 68 0 chr6 71507239 71507696 -117771858 + Tigger1 DNA MER2_type 1 488 -1930 8363 119 5 15 chr6 71507722 71508918 -117770636 - HSMAR1 DNA Mariner -6 1281 96 2827 9 0 6 chr6 71508918 71509234 -117770320 + AluYb8 SINE Alu 1 314 -4 8363 119 5 15 chr6 71509234 71509330 -117770224 - HSMAR1 DNA Mariner -1191 96 1 5776 133 19 4 chr6 71509330 71510303 -117769251 + Tigger1 DNA MER2_type 491 1478 -940 2866 10 0 0 chr6 71510305 71510616 -117768938 + AluYa5 SINE Alu 1 311 0 645 237 0 15 chr6 71510626 71510761 -117768793 + FLAM_A SINE Alu 1 133 0 29760 101 9 8 chr6 71510770 71516503 -117763051 + L1PA7 LINE L1 714 6460 -9 877 213 11 11 chr6 71516503 71516677 -117762877 + AluJo SINE Alu 127 300 -12 4534 126 141 6 chr6 71516677 71517516 -117762038 + Tigger1 DNA MER2_type 1467 2418 0 23 68 0 0 chr6 71517761 71517805 -117761749 + AT_rich Low_complexity Low_complexity 1 44 0 2414 110 29 8 chr6 71519031 71519414 -117760140 - MER4C LTR ERV1 0 465 75 4202 202 88 15 chr6 71519414 71520968 -117758586 - MER52A LTR ERV1 0 1755 1 45364 113 23 19 chr6 71520979 71523293 -117756261 - MER52A-int LTR ERV1 -9 7082 4779 2135 116 0 0 chr6 71523293 71523569 -117755985 - AluSp SINE Alu -23 290 15 45364 113 23 19 chr6 71523569 71524516 -117755038 - MER52A-int LTR ERV1 -2312 4779 3837 1764 181 50 8 chr6 71524516 71524876 -117754678 + THE1C LTR MaLR 1 375 0 9408 136 43 23 chr6 71524876 71526425 -117753129 + THE1B-int LTR MaLR 1 1580 0 1775 148 42 79 chr6 71526425 71526803 -117752751 + THE1B LTR MaLR 1 364 0 45364 113 23 19 chr6 71526803 71530165 -117749389 - MER52A-int LTR ERV1 -3254 3837 490 231 36 0 0 chr6 71530165 71530193 -117749361 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 45364 113 23 19 chr6 71530193 71530468 -117749086 - MER52A-int LTR ERV1 -6601 490 147 1955 152 0 3 chr6 71530468 71530797 -117748757 - AluSg SINE Alu 0 328 1 45364 113 23 19 chr6 71530797 71530945 -117748609 - MER52A-int LTR ERV1 -6944 147 1 6893 177 149 22 chr6 71530945 71532502 -117747052 - MER52A LTR ERV1 0 1755 1 450 101 0 25 chr6 71532503 71532582 -117746972 - MER4C LTR ERV1 -388 77 1 2639 133 8 107 chr6 71532597 71533250 -117746304 - MER4C-int LTR ERV1 -3 6595 6008 7616 28 3 1 chr6 71533251 71534745 -117744809 - L1PA2 LINE L1 -1 6154 4660 987 154 7 0 chr6 71534745 71534894 -117744660 - AluSg/x SINE Alu -31 281 132 12348 162 62 53 chr6 71534894 71538748 -117740806 - MER4C-int LTR ERV1 -587 6011 786 1888 202 34 31 chr6 71538749 71539329 -117740225 - MER4C-int LTR ERV1 -3734 3024 1830 243 226 203 15 chr6 71539335 71539468 -117740086 - MER34C LTR ERV1 -268 317 160 513 125 11 23 chr6 71539505 71539593 -117739961 - MER4C-int LTR ERV1 -3214 2732 2646 * 1477 247 46 30 chr6 71539589 71540022 -117739532 - MER4C-int LTR ERV1 -4048 2283 1844 2314 152 134 23 chr6 71540057 71540703 -117738851 - MER4C-int LTR ERV1 -5772 826 1 2796 106 38 16 chr6 71540709 71541161 -117738393 - MER4C LTR ERV1 -3 462 1 1798 135 37 57 chr6 71541394 71541713 -117737841 + AluSx SINE Alu 1 312 0 38 0 0 0 chr6 71541730 71541768 -117737786 + AT_rich Low_complexity Low_complexity 1 38 0 261 0 0 0 chr6 71542100 71542129 -117737425 + (CA)n Simple_repeat Simple_repeat 2 30 0 2723 165 28 28 chr6 71543167 71543736 -117735818 - L1MC3 LINE L1 -7 7778 7210 228 143 0 0 chr6 71544511 71544553 -117735001 + (CA)n Simple_repeat Simple_repeat 1 42 0 201 182 0 0 chr6 71544894 71544927 -117734627 + A-rich Low_complexity Low_complexity 1 33 0 637 302 95 29 chr6 71544971 71545213 -117734341 + MIR SINE MIR 2 259 -3 303 209 45 0 chr6 71545288 71545372 -117734182 + MIR SINE MIR 54 143 -65 390 254 127 0 chr6 71546109 71546243 -117733311 + L1MEc LINE L1 43 193 -6203 2627 143 2 2 chr6 71546252 71546685 -117732869 - ERVL LTR ERVL -1688 4076 3644 193 353 44 0 chr6 71546689 71546757 -117732797 + MER5A DNA MER1_type 108 178 -11 186 254 30 30 chr6 71547014 71547081 -117732473 + MIR SINE MIR 84 150 -112 480 242 192 25 chr6 71547732 71547930 -117731624 + MIR SINE MIR 32 262 0 1648 157 42 11 chr6 71548225 71548511 -117731043 - AluJo SINE Alu -17 295 1 5162 83 55 4 chr6 71549156 71550103 -117729451 + L1P3 LINE L1 4540 5536 -618 329 305 44 40 chr6 71550458 71550707 -117728847 + L1MC5 LINE L1 7511 7760 -201 612 103 9 86 chr6 71550712 71550828 -117728726 - THE1C LTR MaLR -268 107 1 249 213 25 41 chr6 71550844 71550966 -117728588 - L1MC4 LINE L1 -825 7217 7098 331 176 20 66 chr6 71551569 71551676 -117727878 - L1MC4 LINE L1 0 8042 7898 373 297 38 34 chr6 71551710 71551919 -117727635 + MLT1J LTR MaLR 301 510 -1 1192 58 0 7 chr6 71553038 71553192 -117726362 + L1PA5 LINE L1 5991 6143 -11 22 0 0 0 chr6 71553192 71553214 -117726340 + AT_rich Low_complexity Low_complexity 1 22 0 2385 54 7 0 chr6 71553805 71554101 -117725453 + L1PA3 LINE L1 5855 6152 -3 6501 60 13 12 chr6 71554124 71554984 -117724570 + L1PA7 LINE L1 5294 6154 0 27 0 0 0 chr6 71554999 71555026 -117724528 + AT_rich Low_complexity Low_complexity 1 27 0 675 219 66 25 chr6 71555347 71555543 -117724011 - MER3 DNA MER1_type 0 209 6 297 233 95 78 chr6 71556697 71556993 -117722561 + L1MEd LINE L1 904 1204 -4915 1155 254 37 39 chr6 71557131 71557537 -117722017 + L1M4 LINE L1 226 630 -5912 18617 175 24 13 chr6 71557551 71563517 -117716037 + L1MA1 LINE L1 13 6081 -1640 4785 174 34 35 chr6 71563517 71564583 -117714971 + MER11C LTR ERVK 3 1067 -4 18617 175 24 13 chr6 71564583 71566235 -117713319 + L1MA1 LINE L1 6081 7714 -7 28 29 0 0 chr6 71566235 71566270 -117713284 + AT_rich Low_complexity Low_complexity 1 35 0 3265 210 55 95 chr6 71566288 71567631 -117711923 + L1M4 LINE L1 632 1919 -4727 2272 201 26 28 chr6 71568241 71568812 -117710742 + L1MB7 LINE L1 5615 6184 0 663 258 130 12 chr6 71568809 71569131 -117710423 + L1M4 LINE L1 4940 5299 -1345 * 1102 242 91 58 chr6 71569962 71570359 -117709195 - MLT1J1 LTR MaLR 0 446 37 2256 104 0 0 chr6 71571153 71571461 -117708093 + AluSq SINE Alu 1 308 -5 399 311 0 8 chr6 71571527 71571659 -117707895 + LTR16C LTR ERVL 361 491 0 240 324 216 10 chr6 71571677 71571779 -117707775 - MIR SINE MIR -121 141 19 195 255 0 20 chr6 71571791 71571842 -117707712 + MIR3 SINE MIR 155 204 -4 2270 89 0 3 chr6 71571941 71572233 -117707321 - AluY SINE Alu -20 291 1 6002 153 5 11 chr6 71573663 71574719 -117704835 + L1PA11 LINE L1 4067 5115 -1031 * 22809 55 8 4 chr6 71574712 71577704 -117701850 - L1PA4 LINE L1 -751 5395 2392 5747 56 4 1 chr6 71577706 71578436 -117701118 + L1PA4 LINE L1 5419 6150 -5 5814 123 14 10 chr6 71578447 71579549 -117700005 + L1PA11 LINE L1 5098 6173 -1 396 411 37 25 chr6 71579613 71579856 -117699698 + L2 LINE L2 2938 3183 -89 252 200 0 17 chr6 71581817 71581877 -117697677 + LTR68 LTR ERV1 1 59 -681 198 0 0 0 chr6 71581907 71581929 -117697625 + (TG)n Simple_repeat Simple_repeat 1 22 0 1499 189 37 11 chr6 71581929 71582199 -117697355 - AluJb SINE Alu -33 279 3 185 186 21 21 chr6 71582479 71582576 -117696978 + (TA)n Simple_repeat Simple_repeat 1 97 0 346 263 34 96 chr6 71582594 71582887 -117696667 - L1MC4 LINE L1 -144 7898 7624 2777 175 8 4 chr6 71582929 71583426 -117696128 - L1PA15 LINE L1 -2 6163 5665 8905 243 39 11 chr6 71583426 71585573 -117693981 - L1PA13 LINE L1 -2085 4712 2480 1943 124 10 17 chr6 71585573 71585872 -117693682 + AluSq SINE Alu 1 297 -16 8905 243 39 11 chr6 71585872 71586291 -117693263 - L1PA13 LINE L1 -4317 2480 2074 664 178 15 0 chr6 71586292 71586427 -117693127 + L1MDa LINE L1 2511 2647 -3893 1171 222 16 13 chr6 71586470 71586781 -117692773 + L1MDa LINE L1 2775 3086 -3454 26080 56 5 3 chr6 71586820 71590970 -117688584 - L1PA4 LINE L1 -1 6154 1996 842 143 41 27 chr6 71590970 71591117 -117688437 + AluSg/x SINE Alu 68 216 -94 3034 206 20 9 chr6 71591151 71591811 -117687743 - L1PA13 LINE L1 -4801 1986 1320 357 159 29 14 chr6 71591900 71591969 -117687585 - MER94 DNA DNA -49 85 16 259 254 0 0 chr6 71592410 71592469 -117687085 + LTR40a LTR ERVL 454 512 -7 25 0 0 0 chr6 71593375 71593400 -117686154 + AT_rich Low_complexity Low_complexity 1 25 0 226 341 0 0 chr6 71593695 71593786 -117685768 + L1MC4 LINE L1 6611 6701 -1341 * 280 300 0 0 chr6 71593712 71593802 -117685752 - L1MC4 LINE L1 -1339 6703 6614 450 176 0 0 chr6 71593802 71593887 -117685667 + (TATG)n Simple_repeat Simple_repeat 1 85 0 268 294 18 18 chr6 71594387 71594489 -117685065 + GA-rich Low_complexity Low_complexity 1 102 0 21 71 0 0 chr6 71595096 71595138 -117684416 + AT_rich Low_complexity Low_complexity 1 42 0 1710 198 64 17 chr6 71595344 71595749 -117683805 - MSTA LTR MaLR -4 424 1 229 269 108 46 chr6 71595770 71595900 -117683654 - MIR3 SINE MIR -68 140 3 23676 60 6 1 chr6 71597510 71601388 -117678166 + L1PA4 LINE L1 2258 6149 -6 2078 147 6 0 chr6 71601427 71601746 -117677808 + HERVK11 LTR ERVK 1 321 -7632 * 20910 102 10 2 chr6 71601741 71605389 -117674165 + HERVK11 LTR ERVK 206 3892 -4061 1058 149 13 1 chr6 71605389 71607340 -117672214 - ALR/Alpha Satellite centromeric 0 1974 1 1262 126 8 5 chr6 71607379 71609406 -117670148 - ALR/Alpha Satellite centromeric 0 6789 4769 185 0 40 0 chr6 71609406 71609431 -117670123 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7526 29 0 0 chr6 71609431 71610501 -117669053 - L1PA3 LINE L1 -10 6145 5077 1262 126 8 5 chr6 71610501 71614149 -117665405 - ALR/Alpha Satellite centromeric -2019 4770 1 2968 155 20 6 chr6 71614149 71614653 -117664901 - MER9 LTR ERVK 0 511 1 2041 133 6 0 chr6 71614653 71614975 -117664579 - HERVK9 LTR ERVK 0 5916 4936 38929 94 23 18 chr6 71615030 71619768 -117659786 - HERVK9 LTR ERVK -282 5634 759 183 240 77 67 chr6 71619768 71619872 -117659682 - MER5B DNA MER1_type -16 162 58 38929 94 23 18 chr6 71619872 71620635 -117658919 - HERVK9 LTR ERVK -5157 759 1 3154 152 0 8 chr6 71620635 71621150 -117658404 - MER9 LTR ERVK 0 511 1 1077 111 0 0 chr6 71621150 71621353 -117658201 - ALR/Alpha Satellite centromeric 0 203 1 1219 140 6 2 chr6 71621364 71628326 -117651228 - ALR/Alpha Satellite centromeric -3 6992 1 1172 143 3 1 chr6 71628339 71629939 -117649615 - ALR/Alpha Satellite centromeric 0 1603 1 1172 146 6 2 chr6 71629951 71632357 -117647197 - ALR/Alpha Satellite centromeric 0 2414 1 1817 33 0 0 chr6 71632357 71632569 -117646985 - L1P1 LINE L1 -381 5774 5563 247 33 0 0 chr6 71632564 71632594 -117646960 - L1P1 LINE L1 -1242 4904 4875 * 1179 154 10 1 chr6 71632594 71632613 -117646941 + ALR/Alpha Satellite centromeric 1 18 -3300 3238 34 0 0 chr6 71632613 71632995 -117646559 + L1PA3 LINE L1 5770 6155 0 1179 154 10 1 chr6 71632995 71635869 -117643685 + ALR/Alpha Satellite centromeric 18 3305 -13 1214 142 5 1 chr6 71635883 71647851 -117631703 + ALR/Alpha Satellite centromeric 1 12007 -15 1238 140 2 2 chr6 71647869 71650351 -117629203 + ALR/Alpha Satellite centromeric 1 2482 -26 34792 59 9 2 chr6 71650366 71656474 -117623080 - L1PA3 LINE L1 -3 6152 10 1273 138 3 2 chr6 71656478 71662076 -117617478 + ALR/Alpha Satellite centromeric 1 5603 -26 40930 46 28 2 chr6 71662080 71668074 -117611480 - L1PA2 LINE L1 0 6155 1 1355 130 3 0 chr6 71668074 71689644 -117589910 + ALR/Alpha Satellite centromeric 1 21625 0 1260 140 7 3 chr6 71689660 71697821 -117581733 + ALR/Alpha Satellite centromeric 1 8193 0 1337 134 7 1 chr6 71697833 71724716 -117554838 + ALR/Alpha Satellite centromeric 1 27040 0 1250 130 6 0 chr6 71724730 71730799 -117548755 + ALR/Alpha Satellite centromeric 1 6105 0 1202 132 9 0 chr6 71730904 71731647 -117547907 + ALR/Alpha Satellite centromeric 1 749 0 1263 137 7 0 chr6 71731661 71739057 -117540497 + ALR/Alpha Satellite centromeric 1 7440 -33 1337 136 6 1 chr6 71739165 71756680 -117522874 + ALR/Alpha Satellite centromeric 1 17595 -57 1266 138 3 1 chr6 71806681 71810500 -117469054 + ALR/Alpha Satellite centromeric 1 3827 -11 1217 140 2 3 chr6 71810514 71814118 -117465436 + ALR/Alpha Satellite centromeric 1 3600 -7 7004 43 2 0 chr6 71814118 71814976 -117464578 + L1PA4 LINE L1 5293 6152 -3 1279 121 9 3 chr6 71814989 71816990 -117462564 + ALR/Alpha Satellite centromeric 1 3019 -730 6997 107 13 1 chr6 71816990 71817983 -117461571 + LTR13 LTR ERVK 1 1005 -2 1279 121 9 3 chr6 71817983 71818681 -117460873 + ALR/Alpha Satellite centromeric 3019 3712 -37 * 1797 90 4 0 chr6 71818677 71818932 -117460622 + LTR13 LTR ERVK 1 256 -751 1214 142 2 0 chr6 71818943 71822004 -117457550 - ALR/Alpha Satellite centromeric 0 3067 1 1189 134 11 8 chr6 71822015 71825422 -117454132 - ALR/Alpha Satellite centromeric 0 3417 1 1151 128 1 0 chr6 71825434 71826032 -117453522 - ALR/Alpha Satellite centromeric 0 598 1 1196 140 5 0 chr6 71826056 71832769 -117446785 - ALR/Alpha Satellite centromeric -13 6742 1 1195 128 12 4 chr6 71832783 71834703 -117444851 - ALR/Alpha Satellite centromeric 0 1935 1 2961 161 8 8 chr6 71834705 71835213 -117444341 - MER9 LTR ERVK -2 509 2 2044 93 7 0 chr6 71835214 71835494 -117444060 - HERVK9 LTR ERVK 0 5916 5635 2393 90 0 0 chr6 71835589 71835900 -117443654 - HERVK9 LTR ERVK -282 5634 5324 339 303 63 7 chr6 71835900 71836042 -117443512 - ALR/Alpha Satellite centromeric -21 150 1 * 1184 133 6 4 chr6 71835918 71844875 -117434679 - ALR/Alpha Satellite centromeric -7 8973 1 1259 132 6 1 chr6 71844887 71849356 -117430198 + ALR/Alpha Satellite centromeric 1 4491 0 1102 159 3 2 chr6 71849370 71850471 -117429083 + ALR/Alpha Satellite centromeric 1 1102 0 1083 148 2 0 chr6 71850491 71850807 -117428747 + ALR/Alpha Satellite centromeric 1 316 -3 1219 136 6 1 chr6 71850818 71856988 -117422566 + ALR/Alpha Satellite centromeric 1 6199 0 1277 139 16 1 chr6 71856999 71858735 -117420819 + ALR/Alpha Satellite centromeric 1 1761 -31 30292 48 11 2 chr6 71858735 71863391 -117416163 + L1PA4 LINE L1 1457 6151 -4 1082 220 31 88 chr6 71863391 71863778 -117415776 - MLT1B LTR MaLR -25 365 1 421 255 10 0 chr6 71864029 71864131 -117415423 + MIR SINE MIR 110 212 -50 566 317 97 36 chr6 71864897 71865288 -117414266 + L2 LINE L2 1351 1765 -1549 364 189 74 53 chr6 71865289 71865402 -117414152 + MER34C LTR ERV1 12 136 -449 2314 137 315 4 chr6 71865402 71865900 -117413654 + MER39B LTR ERV1 1 653 0 1252 208 168 28 chr6 71865900 71866304 -117413250 + MER34B LTR ERV1 102 565 0 733 287 52 0 chr6 71866304 71866555 -117412999 + L2 LINE L2 1768 2031 -1283 325 321 115 34 chr6 71866573 71866782 -117412772 + MIR SINE MIR 25 250 -12 2564 172 4 8 chr6 71867282 71867759 -117411795 + L1PA13 LINE L1 4496 4970 -1176 2072 177 43 27 chr6 71867763 71868296 -117411258 - MLT2A2 LTR ERVL 0 554 2 5671 121 9 6 chr6 71868296 71869475 -117410079 + L1PA13 LINE L1 4969 6149 -14 29215 124 17 57 chr6 71869496 71875893 -117403661 + L1PA7 LINE L1 12 6139 -15 773 343 18 7 chr6 71878376 71878650 -117400904 - MLT1I LTR MaLR -74 335 59 258 230 14 54 chr6 71878736 71878751 -117400803 + L2 LINE L2 3243 3257 -56 351 0 0 0 chr6 71878751 71878790 -117400764 + (TG)n Simple_repeat Simple_repeat 2 40 0 * 420 20 0 0 chr6 71878789 71878838 -117400716 + (TA)n Simple_repeat Simple_repeat 1 49 0 258 230 14 54 chr6 71878790 71878896 -117400658 + L2 LINE L2 3257 3313 0 328 180 18 126 chr6 71878920 71879031 -117400523 + MER112 DNA MER1_type 122 220 -40 264 279 91 82 chr6 71879957 71880176 -117399378 - MLT1J LTR MaLR -192 319 99 186 213 33 66 chr6 71880249 71880310 -117399244 + MIR SINE MIR 158 216 -46 5859 148 23 12 chr6 71880982 71882232 -117397322 + L1MA3 LINE L1 5016 6281 -24 23 54 0 0 chr6 71882232 71882269 -117397285 + AT_rich Low_complexity Low_complexity 1 37 0 3253 43 0 0 chr6 71882687 71883084 -117396470 + L1PA4 LINE L1 5754 6150 -5 854 170 0 0 chr6 71883159 71883300 -117396254 + FLAM_C SINE Alu 1 141 -2 243 0 0 0 chr6 71883497 71883524 -117396030 + (TG)n Simple_repeat Simple_repeat 2 28 0 1164 192 46 87 chr6 71883656 71884046 -117395508 + MLT1A2 LTR MaLR 1 374 0 22 35 0 0 chr6 71884247 71884276 -117395278 + AT_rich Low_complexity Low_complexity 1 29 0 4890 149 41 7 chr6 71884392 71885229 -117394325 - MER6 DNA MER2_type 0 865 1 365 368 47 6 chr6 71885599 71885770 -117393784 + MER5B DNA MER1_type 1 178 0 198 220 34 0 chr6 71886358 71886417 -117393137 + MER5B DNA MER1_type 1 61 -117 * 536 218 218 0 chr6 71886380 71886513 -117393041 - MER5A DNA MER1_type -24 165 4 307 260 10 60 chr6 71886844 71886944 -117392610 - MER63A DNA MER1_type -4 206 112 1554 181 142 95 chr6 71887295 71887971 -117391583 - Charlie1a DNA MER1_type -7 1448 741 5181 120 14 7 chr6 71888040 71888762 -117390792 - L1PA15 LINE L1 -4 6161 5445 1780 165 7 7 chr6 71888762 71889065 -117390489 - AluSx SINE Alu -5 307 5 5181 120 14 7 chr6 71889065 71889934 -117389620 - L1PA15 LINE L1 -720 5445 4579 581 205 8 0 chr6 71889935 71890052 -117389502 - L1PA15 LINE L1 -1777 4369 4252 13034 227 21 13 chr6 71890065 71894313 -117385241 - L1PA13 LINE L1 -1548 5249 955 2591 213 16 102 chr6 71894329 71895147 -117384407 - Charlie1a DNA MER1_type -707 748 1 13915 176 26 18 chr6 71895524 71896275 -117383279 - L1 LINE L1 -2392 5173 4429 1616 199 14 7 chr6 71896275 71896571 -117382983 + AluJb SINE Alu 1 298 -14 13915 176 26 18 chr6 71896571 71899774 -117379780 - L1 LINE L1 -3136 4429 1188 3034 216 33 4 chr6 71900411 71901101 -117378453 + MER67C LTR ERV1 1 710 0 5291 147 21 51 chr6 71902805 71903994 -117375560 + L1MA4 LINE L1 4663 5784 -516 324 70 0 0 chr6 71903994 71904037 -117375517 + (TG)n Simple_repeat Simple_repeat 1 43 0 5291 147 21 51 chr6 71904037 71904524 -117375030 + L1MA4 LINE L1 5784 6284 -16 707 141 0 74 chr6 71904558 71904693 -117374861 - LTR8 LTR ERV1 -565 126 2 2430 180 52 22 chr6 71904857 71905356 -117374198 - MER67D LTR ERV1 0 514 1 1308 196 14 29 chr6 71905387 71905662 -117373892 + AluJo SINE Alu 38 308 -4 382 328 8 8 chr6 71905665 71905796 -117373758 + CT-rich Low_complexity Low_complexity 2 132 0 2126 201 9 2 chr6 71905925 71906382 -117373172 - L1 LINE L1 -1082 5064 4605 15909 177 56 5 chr6 71906395 71911503 -117368051 + L1PB2 LINE L1 3 5404 -1458 2235 129 3 0 chr6 71911503 71911814 -117367740 + AluSp SINE Alu 1 312 -1 15909 177 56 5 chr6 71911814 71912105 -117367449 + L1PB2 LINE L1 5404 5679 -1183 1791 158 7 13 chr6 71912623 71912921 -117366633 + AluSq SINE Alu 5 300 -13 5997 125 13 1 chr6 71912921 71914105 -117365449 + L1PB2 LINE L1 5665 6864 0 2066 183 56 0 chr6 71914116 71914563 -117364991 - L1 LINE L1 -1530 4616 4145 225 306 41 0 chr6 71914640 71914738 -117364816 - L1MA10 LINE L1 -7 6327 6226 332 196 11 11 chr6 71914791 71914883 -117364671 - L1 LINE L1 -3145 3001 2910 394 265 73 0 chr6 71914905 71915041 -117364513 - L1MEc LINE L1 -6206 190 45 277 111 0 0 chr6 71916183 71916228 -117363326 + MADE1 DNA Mariner 36 80 0 2235 100 3 0 chr6 71917771 71918061 -117361493 + AluSp SINE Alu 1 291 -22 3961 101 65 86 chr6 71918215 71918917 -117360637 + LTR12 LTR ERV1 1 688 0 378 195 47 35 chr6 71919502 71919671 -117359883 + (TATAA)n Simple_repeat Simple_repeat 2 172 0 314 283 73 93 chr6 71920174 71920657 -117358897 + L1M4 LINE L1 3209 3679 -2467 1227 229 70 19 chr6 71921085 71921456 -117358098 - L1ME2 LINE L1 -106 6058 5669 * 3339 247 55 21 chr6 71921454 71922609 -117356945 - L1ME2 LINE L1 -1231 4915 3722 319 337 21 0 chr6 71923459 71923554 -117356000 + MIR3 SINE MIR 85 181 -27 536 286 80 46 chr6 71923946 71924208 -117355346 + MLT1K LTR MaLR 316 586 -2 613 317 45 45 chr6 71924516 71924936 -117354618 + MLT1K LTR MaLR 167 586 -2 205 339 0 0 chr6 71925993 71926052 -117353502 - L2 LINE L2 -1 3312 3254 1463 184 4 36 chr6 71926519 71926796 -117352758 + AluJb SINE Alu 24 291 -21 3018 91 2 21 chr6 71926796 71927253 -117352301 + L1PA8 LINE L1 5727 6175 0 216 402 0 0 chr6 71928740 71928822 -117350732 - MIR SINE MIR -169 93 12 1834 171 135 72 chr6 71929816 71929900 -117349654 - LTR49 LTR ERV1 -3 592 515 1521 201 6 13 chr6 71929900 71930214 -117349340 + AluJo SINE Alu 1 312 0 1834 171 135 72 chr6 71930214 71930684 -117348870 - LTR49 LTR ERV1 -80 515 3 9986 174 71 54 chr6 71930709 71933156 -117346398 - LTR49-int LTR ERV1 -16 6315 3828 829 180 7 0 chr6 71933189 71933339 -117346215 + L1M1 LINE L1 5617 5767 -538 437 232 69 36 chr6 71933454 71933743 -117345811 - LTR49-int LTR ERV1 -1972 2908 1951 405 120 43 43 chr6 71933817 71933909 -117345645 - LTR49-int LTR ERV1 -3194 1929 1838 408 169 0 0 chr6 71934093 71934164 -117345390 - MER31-int LTR ERV1 -2997 3334 3264 654 195 43 71 chr6 71934216 71934426 -117345128 - MER31-int LTR ERV1 -3059 3272 3069 298 200 0 70 chr6 71934458 71934558 -117344996 - MER31-int LTR ERV1 -3729 1394 1302 292 233 17 0 chr6 71934566 71934626 -117344928 - MER31-int LTR ERV1 -4641 1957 1897 23 0 0 0 chr6 71934630 71934653 -117344901 + AT_rich Low_complexity Low_complexity 1 23 0 2205 120 0 0 chr6 71934653 71934945 -117344609 - AluSc SINE Alu -17 292 1 663 253 124 35 chr6 71934988 71935245 -117344309 - MER34C LTR ERV1 -146 439 160 477 254 46 15 chr6 71935377 71935507 -117344047 - MER31-int LTR ERV1 -4290 2041 1908 688 221 41 112 chr6 71935555 71935728 -117343826 - MER31-int LTR ERV1 -4326 1902 1718 357 24 0 0 chr6 71935728 71935770 -117343784 + (TA)n Simple_repeat Simple_repeat 1 42 0 688 221 41 112 chr6 71935770 71935961 -117343593 - MER31-int LTR ERV1 -4510 1718 364 255 61 0 0 chr6 71936821 71936854 -117342700 + (T)n Simple_repeat Simple_repeat 1 33 0 1987 112 0 14 chr6 71936915 71937202 -117342352 - AluSg SINE Alu 0 310 28 3052 221 43 60 chr6 71937333 71938106 -117341448 - MER31-int LTR ERV1 -5416 915 131 180 0 0 0 chr6 71938106 71938126 -117341428 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3052 221 43 60 chr6 71938126 71938181 -117341373 - MER31-int LTR ERV1 -6196 135 100 3124 93 5 7 chr6 71938181 71938630 -117340924 + LTR7 LTR ERV1 1 448 -2 2486 181 33 29 chr6 71938632 71939228 -117340326 + HERVH LTR ERV1 1 560 -7153 * 14633 112 3 25 chr6 71939216 71941497 -117338057 + HERVH LTR ERV1 756 2985 -4728 7792 123 7 13 chr6 71941494 71943212 -117336342 + HERVH LTR ERV1 3504 5225 -1866 * 1253 140 17 64 chr6 71943213 71943449 -117336105 + HERVH LTR ERV1 5600 5824 -1889 * 2257 109 50 13 chr6 71943443 71943819 -117335735 + HERVH LTR ERV1 7324 7713 0 3182 91 5 7 chr6 71943819 71944268 -117335286 + LTR7 LTR ERV1 1 448 -2 758 124 0 0 chr6 71944270 71944375 -117335179 - LTR49-int LTR ERV1 -6226 105 1 1857 184 105 89 chr6 71944382 71944936 -117334618 - LTR49 LTR ERV1 -5 590 1 25 0 0 0 chr6 71945273 71945298 -117334256 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 71945362 71945384 -117334170 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr6 71945516 71945541 -117334013 + (A)n Simple_repeat Simple_repeat 1 25 0 2267 107 0 0 chr6 71945685 71945983 -117333571 - AluSx SINE Alu -14 298 1 332 265 49 27 chr6 71946019 71946204 -117333350 + L1M4 LINE L1 4567 4755 -1391 200 152 43 0 chr6 71946229 71946275 -117333279 + (CATA)n Simple_repeat Simple_repeat 2 49 0 243 218 0 0 chr6 71946294 71946349 -117333205 + (TG)n Simple_repeat Simple_repeat 2 56 0 5165 65 1 1 chr6 71946434 71947093 -117332461 - L1PA7 LINE L1 0 6154 5496 2078 91 4 4 chr6 71947093 71947358 -117332196 + AluSq SINE Alu 23 287 -26 2182 87 0 11 chr6 71947887 71948173 -117331381 + AluY SINE Alu 1 283 -28 24 0 0 0 chr6 71948173 71948197 -117331357 + AT_rich Low_complexity Low_complexity 1 24 0 1621 246 111 30 chr6 71948337 71948861 -117330693 - MLT1F1 LTR MaLR 0 567 2 21 0 0 0 chr6 71949053 71949074 -117330480 + AT_rich Low_complexity Low_complexity 1 21 0 841 202 15 9 chr6 71949751 71949928 -117329626 - L1PA16 LINE L1 -74 6080 5903 413 276 92 6 chr6 71950429 71950592 -117328962 + MIR SINE MIR 74 250 -12 308 237 336 0 chr6 71950610 71950741 -117328813 - MIR SINE MIR -13 249 75 2579 58 0 0 chr6 71950836 71951147 -117328407 - AluY SINE Alu 0 311 1 496 291 0 33 chr6 71951165 71951316 -117328238 + L2 LINE L2 3161 3306 -7 267 325 123 13 chr6 71951378 71951532 -117328022 - MIR3 SINE MIR -5 203 33 188 303 71 50 chr6 71952081 71952180 -117327374 - MIR SINE MIR -114 148 48 445 313 33 28 chr6 71952765 71952947 -117326607 + MIR SINE MIR 18 200 -62 2340 106 3 0 chr6 71952947 71953258 -117326296 + AluSx SINE Alu 1 312 0 268 235 15 0 chr6 71953289 71953357 -117326197 + MIR SINE MIR 191 259 -3 1237 171 8 25 chr6 71953601 71953840 -117325714 + MER46A DNA MER2_type 1 235 -1 294 29 0 0 chr6 71954460 71954495 -117325059 + (TA)n Simple_repeat Simple_repeat 1 35 0 25 31 0 0 chr6 71954515 71954547 -117325007 + AT_rich Low_complexity Low_complexity 1 32 0 329 261 43 35 chr6 71954715 71954830 -117324724 - MIR SINE MIR -75 133 18 219 36 0 0 chr6 71956081 71956109 -117323445 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2101 121 0 12 chr6 71956459 71956791 -117322763 - L1PA13 LINE L1 -3 6160 5833 260 216 98 29 chr6 71956905 71957007 -117322547 + L2 LINE L2 3158 3266 -47 2851 139 30 4 chr6 71957118 71957433 -117322121 - L1PB3 LINE L1 -3 6151 5845 279 0 0 0 chr6 71957433 71957464 -117322090 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2163 112 3 0 chr6 71957464 71957749 -117321805 - AluSp SINE Alu -27 286 1 2851 139 30 4 chr6 71957749 71957907 -117321647 - L1PB3 LINE L1 -308 5846 5665 283 241 81 23 chr6 71957990 71958077 -117321477 + MIR SINE MIR 168 259 -3 23 33 0 0 chr6 71958120 71958150 -117321404 + AT_rich Low_complexity Low_complexity 1 30 0 355 339 23 8 chr6 71958445 71958575 -117320979 + MIR SINE MIR 23 154 -108 781 290 76 40 chr6 71958595 71959040 -117320514 + LTR16B LTR ERVL 1 461 -3 1532 325 46 26 chr6 71959051 71959634 -117319920 + HERV16 LTR ERVL 10 580 -4416 1651 236 130 34 chr6 71959634 71960172 -117319382 + MLT1E LTR MaLR 1 590 -3 1532 325 46 26 chr6 71960172 71961305 -117318249 + HERV16 LTR ERVL 580 1859 -3137 1661 337 60 25 chr6 71961308 71962367 -117317187 + HERVL LTR ERVL 3147 4242 -1412 345 337 52 37 chr6 71962842 71963243 -117316311 + HERVL LTR ERVL 4834 5240 -414 770 306 116 42 chr6 71963381 71963813 -117315741 + LTR16B LTR ERVL 1 464 0 2816 10 0 0 chr6 71964967 71965278 -117314276 + AluY SINE Alu 1 311 0 248 297 39 39 chr6 71965286 71965414 -117314140 + MER77 LTR ERV1 66 193 -412 * 1266 266 41 95 chr6 71965391 71966046 -117313508 + MER21B LTR ERV1 98 717 -146 279 0 0 0 chr6 71966206 71966237 -117313317 + (T)n Simple_repeat Simple_repeat 1 31 0 246 312 112 32 chr6 71969167 71969292 -117310262 - L2 LINE L2 -2 3270 3136 288 0 0 0 chr6 71969301 71969333 -117310221 + (A)n Simple_repeat Simple_repeat 1 32 0 274 399 23 8 chr6 71971590 71971723 -117307831 + L2 LINE L2 3179 3313 0 186 231 0 0 chr6 71972863 71972902 -117306652 + L2 LINE L2 2604 2642 -672 1124 175 25 30 chr6 71974535 71974735 -117304819 + MER20 DNA MER1_type 20 218 -1 190 356 27 41 chr6 71974773 71974919 -117304635 + L2 LINE L2 3154 3297 -16 7493 34 3 0 chr6 71975028 71976074 -117303480 - L1PA3 LINE L1 0 6155 5109 4535 38 0 0 chr6 71976074 71976622 -117302932 + L1PA3 LINE L1 4563 5110 -1036 269 312 39 52 chr6 71977619 71977773 -117301781 + L2 LINE L2 3159 3310 -3 531 255 130 29 chr6 71977940 71978285 -117301269 + L1MC5 LINE L1 7521 7900 -61 216 387 19 33 chr6 71979086 71979298 -117300256 + L2 LINE L2 2550 2758 -556 265 378 54 0 chr6 71979664 71979775 -117299779 + L2 LINE L2 3154 3270 -2 239 275 0 58 chr6 71979939 71980008 -117299546 - MIR3 SINE MIR -47 161 97 27 0 0 0 chr6 71980182 71980209 -117299345 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 26 chr6 71980358 71980369 -117299185 + AT_rich Low_complexity Low_complexity 1 11 -26 1714 161 3 20 chr6 71980369 71980673 -117298881 + AluJb SINE Alu 1 299 -13 27 0 0 26 chr6 71980673 71980699 -117298855 + AT_rich Low_complexity Low_complexity 11 37 0 255 295 32 0 chr6 71980786 71980881 -117298673 + MARNA DNA Mariner 164 261 -325 229 296 0 12 chr6 71981051 71981132 -117298422 + (TA)n Simple_repeat Simple_repeat 2 81 0 7431 173 7 16 chr6 71981242 71983484 -117296070 + L1PA13 LINE L1 3924 6163 0 611 272 56 0 chr6 71983962 71984124 -117295430 + MIR SINE MIR 47 217 -45 2147 115 3 0 chr6 71984810 71985114 -117294440 - AluSx SINE Alu -7 305 1 29 28 0 0 chr6 71986137 71986173 -117293381 + AT_rich Low_complexity Low_complexity 1 36 0 272 280 53 0 chr6 71986484 71986559 -117292995 - L2 LINE L2 -3 3310 3232 2048 193 72 27 chr6 71986985 71987497 -117292057 - LTR55 LTR ERV -13 535 1 804 285 126 57 chr6 71987518 71988479 -117291075 + L2 LINE L2 2281 3308 -5 219 356 20 0 chr6 71988738 71988839 -117290715 + L3b LINE CR1 1282 1384 -199 424 211 11 11 chr6 71989107 71989202 -117290352 - MIR SINE MIR -10 252 158 1672 144 35 66 chr6 71989204 71989552 -117290002 - MER46B DNA MER2_type 0 236 25 548 299 7 0 chr6 71989569 71989713 -117289841 - MIR SINE MIR -106 156 12 252 270 54 0 chr6 71990217 71990291 -117289263 - L2 LINE L2 -1 3271 3194 29 47 0 0 chr6 71990418 71990461 -117289093 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr6 71991390 71991412 -117288142 + AT_rich Low_complexity Low_complexity 1 22 0 251 327 106 0 chr6 71991491 71991595 -117287959 - L2 LINE L2 -10 3303 3189 264 30 0 0 chr6 71991602 71991635 -117287919 + (GA)n Simple_repeat Simple_repeat 1 33 0 405 286 46 129 chr6 71992522 71993019 -117286535 - LTR33A LTR ERVL -4 519 64 369 62 0 0 chr6 71993209 71993257 -117286297 + (CA)n Simple_repeat Simple_repeat 2 49 0 1944 133 7 3 chr6 71993259 71993544 -117286010 - AluSx SINE Alu -20 292 7 534 241 251 11 chr6 71994269 71994460 -117285094 - MIR SINE MIR -11 251 15 815 235 55 5 chr6 71994559 71994759 -117284795 + MER63A DNA MER1_type 1 210 0 232 283 106 26 chr6 71996023 71996136 -117283418 - L2 LINE L2 0 3313 3192 325 290 65 30 chr6 71996540 71996709 -117282845 - MER5B DNA MER1_type -3 175 1 23 33 0 0 chr6 71997557 71997587 -117281967 + AT_rich Low_complexity Low_complexity 1 30 0 536 267 64 12 chr6 71997840 71998012 -117281542 + MIR SINE MIR 82 262 0 390 239 0 0 chr6 71998048 71998136 -117281418 + MER94 DNA DNA 13 100 -34 239 273 0 0 chr6 71998663 71998718 -117280836 + (CTATT)n Simple_repeat Simple_repeat 4 58 0 8383 30 0 1 chr6 71999635 72001406 -117278148 + L1PA4 LINE L1 4383 6152 -3 198 0 0 0 chr6 72001415 72001437 -117278117 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 234 0 0 0 chr6 72001496 72001522 -117278032 + (TA)n Simple_repeat Simple_repeat 2 27 0 22 56 0 0 chr6 72006301 72006337 -117273217 + AT_rich Low_complexity Low_complexity 1 36 0 218 247 79 45 chr6 72007161 72007250 -117272304 + MIR SINE MIR 154 245 -17 23 86 0 0 chr6 72007518 72007576 -117271978 + AT_rich Low_complexity Low_complexity 1 58 0 283 253 24 12 chr6 72007708 72007791 -117271763 - MIR SINE MIR -87 175 92 7650 21 0 0 chr6 72009842 72011292 -117268262 - L1PA3 LINE L1 0 6155 4704 5944 22 0 0 chr6 72011287 72011982 -117267572 + L1PA3 LINE L1 4008 4702 -1444 1074 224 22 0 chr6 72012896 72013168 -117266386 - L1MA4 LINE L1 -3 6297 6020 22 56 0 0 chr6 72013716 72013752 -117265802 + AT_rich Low_complexity Low_complexity 1 36 0 237 65 0 0 chr6 72018635 72018666 -117260888 + (A)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr6 72019328 72019349 -117260205 + AT_rich Low_complexity Low_complexity 1 21 0 355 284 10 93 chr6 72019362 72019556 -117259998 - MER5B DNA MER1_type 0 178 1 21 0 0 0 chr6 72020343 72020364 -117259190 + AT_rich Low_complexity Low_complexity 1 21 0 994 236 19 0 chr6 72020464 72020680 -117258874 + MER58A DNA MER1_type 1 220 -4 204 215 76 101 chr6 72021370 72021449 -117258105 + L2 LINE L2 3195 3271 -42 31 58 0 0 chr6 72022876 72022928 -117256626 + AT_rich Low_complexity Low_complexity 1 52 0 199 277 0 96 chr6 72022949 72023032 -117256522 - L2 LINE L2 -19 3253 3179 297 350 25 0 chr6 72024591 72024711 -117254843 - MIR SINE MIR -35 227 105 30 27 0 0 chr6 72024829 72024866 -117254688 + AT_rich Low_complexity Low_complexity 1 37 0 239 309 53 0 chr6 72025361 72025455 -117254099 + L2 LINE L2 3174 3272 0 743 291 63 107 chr6 72026789 72027499 -117252055 + MER21B LTR ERV1 8 686 -177 225 159 0 0 chr6 72027848 72027892 -117251662 + (TA)n Simple_repeat Simple_repeat 2 45 0 610 278 6 28 chr6 72028963 72029139 -117250415 - MER5B DNA MER1_type -6 172 1 21 57 0 0 chr6 72029555 72029590 -117249964 + AT_rich Low_complexity Low_complexity 1 35 0 33 94 0 0 chr6 72030338 72030434 -117249120 + AT_rich Low_complexity Low_complexity 1 96 0 25 0 0 0 chr6 72030465 72030490 -117249064 + AT_rich Low_complexity Low_complexity 1 25 0 272 345 168 0 chr6 72032170 72032283 -117247271 + L2 LINE L2 3180 3311 -2 216 0 0 0 chr6 72033218 72033242 -117246312 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 372 284 35 17 chr6 72033250 72033366 -117246188 + MIR SINE MIR 37 154 -108 202 167 104 0 chr6 72033619 72033667 -117245887 + MIR SINE MIR 102 154 -108 894 195 0 6 chr6 72033966 72034130 -117245424 - FAM SINE Alu -11 174 12 21 71 0 0 chr6 72034147 72034189 -117245365 + AT_rich Low_complexity Low_complexity 1 42 0 2089 95 0 11 chr6 72034233 72034552 -117245002 - AluSc SINE Alu 0 316 1 23 33 0 0 chr6 72034680 72034710 -117244844 + AT_rich Low_complexity Low_complexity 1 30 0 965 289 155 13 chr6 72035818 72036365 -117243189 + L2 LINE L2 1572 2196 -1118 1276 299 45 53 chr6 72036365 72037189 -117242365 + L2 LINE L2 2487 3313 0 26 0 0 0 chr6 72037272 72037298 -117242256 + AT_rich Low_complexity Low_complexity 1 26 0 317 239 15 75 chr6 72038542 72038676 -117240878 + MLT1J LTR MaLR 69 194 -317 258 32 0 0 chr6 72039679 72039710 -117239844 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 370 278 113 35 chr6 72040256 72040493 -117239061 + MLT1J1 LTR MaLR 195 409 0 215 290 16 16 chr6 72040497 72040559 -117238995 + L2 LINE L2 3211 3272 0 23 54 0 0 chr6 72040732 72040769 -117238785 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr6 72041272 72041300 -117238254 + AT_rich Low_complexity Low_complexity 1 28 0 356 163 88 0 chr6 72041300 72041380 -117238174 - L1MA9 LINE L1 -38 6274 6188 277 291 106 53 chr6 72042420 72042702 -117236852 - L2 LINE L2 -341 2973 2677 * 318 313 71 0 chr6 72042690 72042789 -117236765 + L2 LINE L2 3208 3313 0 185 336 107 20 chr6 72043395 72043544 -117236010 - MIR SINE MIR -22 240 79 488 260 89 34 chr6 72043906 72044052 -117235502 + L2 LINE L2 3159 3312 -1 938 294 56 42 chr6 72044792 72045221 -117234333 - L2 LINE L2 -5 3308 2874 23 0 0 0 chr6 72046018 72046041 -117233513 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 72046393 72046418 -117233136 + AT_rich Low_complexity Low_complexity 1 25 0 29 28 0 0 chr6 72046559 72046595 -117232959 + AT_rich Low_complexity Low_complexity 1 36 0 183 139 0 0 chr6 72046735 72046771 -117232783 + (TAGA)n Simple_repeat Simple_repeat 4 39 0 387 297 115 24 chr6 72047002 72047167 -117232387 + MIR SINE MIR 80 259 -3 328 335 67 34 chr6 72048798 72048977 -117230577 - MER5A DNA MER1_type 0 189 5 197 132 26 0 chr6 72049044 72049082 -117230472 + L2 LINE L2 3275 3313 0 1023 347 90 27 chr6 72049123 72049789 -117229765 + L3 LINE CR1 495 1202 -375 341 267 0 11 chr6 72050176 72050266 -117229288 - MLT1H LTR MaLR -438 111 23 290 311 34 79 chr6 72050325 72050502 -117229052 + L3 LINE CR1 1264 1432 -145 371 309 162 25 chr6 72050526 72050730 -117228824 + MIR SINE MIR 31 262 0 745 279 56 12 chr6 72050851 72051174 -117228380 + MER46C DNA MER2_type 1 337 -1 23 0 0 0 chr6 72051292 72051315 -117228239 + AT_rich Low_complexity Low_complexity 1 23 0 526 180 0 55 chr6 72051495 72051623 -117227931 - L1PB4 LINE L1 -1390 4756 4636 * 4690 157 18 47 chr6 72051612 72053054 -117226500 + L1PB4 LINE L1 4748 6156 0 239 229 49 0 chr6 72053849 72053910 -117225644 + Charlie8 DNA MER1_type 57 120 -2297 1409 259 147 21 chr6 72053978 72054461 -117225093 + MLT1G LTR MaLR 45 588 -2 305 283 12 114 chr6 72054461 72054625 -117224929 + Charlie8 DNA MER1_type 130 276 -2141 452 307 92 15 chr6 72055916 72056127 -117223427 + MIR SINE MIR 36 261 -1 510 312 83 11 chr6 72056427 72056693 -117222861 + LTR33 LTR ERVL 1 285 -236 14606 28 1 0 chr6 72057741 72060252 -117219302 - L1PA3 LINE L1 0 6155 3643 2190 103 0 0 chr6 72060673 72060965 -117218589 - AluY SINE Alu -12 299 8 4765 194 27 79 chr6 72060966 72061120 -117218434 + L1PA11 LINE L1 1088 1248 -5213 236 30 30 0 chr6 72061120 72061153 -117218401 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4765 194 27 79 chr6 72061153 72061472 -117218082 + L1PA11 LINE L1 1248 1582 -4879 268 119 0 0 chr6 72061472 72061514 -117218040 + AluSc SINE Alu 240 315 0 274 29 0 0 chr6 72061514 72061548 -117218006 + (CAAA)n Simple_repeat Simple_repeat 2 164 0 4765 194 27 79 chr6 72061548 72062621 -117216933 + L1PA11 LINE L1 1582 2650 -3811 14009 159 22 17 chr6 72062735 72066164 -117213390 + L1PA11 LINE L1 3031 6489 0 444 303 81 38 chr6 72066164 72066534 -117213020 + L1ME4a LINE L1 5680 6065 -56 225 88 0 0 chr6 72066546 72066580 -117212974 - L1PA13 LINE L1 -19 6144 6111 3610 101 18 4 chr6 72066581 72067124 -117212430 + L1PA12 LINE L1 5550 6100 -68 1902 195 17 22 chr6 72067125 72067664 -117211890 - L1ME LINE L1 -501 5665 5132 313 278 22 11 chr6 72067815 72067905 -117211649 - L2 LINE L2 0 3272 3182 191 340 57 28 chr6 72068324 72068430 -117211124 - L2 LINE L2 -221 3051 2943 955 281 18 7 chr6 72069561 72069842 -117209712 + L1ME1 LINE L1 5878 6161 -5 212 213 16 16 chr6 72070938 72070999 -117208555 + GA-rich Low_complexity Low_complexity 2 62 0 2164 104 0 16 chr6 72071005 72071313 -117208241 + AluSq SINE Alu 1 303 -10 355 310 120 50 chr6 72071640 72071982 -117207572 - HAL1 LINE L1 -1045 1462 1097 380 306 149 48 chr6 72072009 72072783 -117206771 - HAL1 LINE L1 0 2507 1656 1015 277 63 57 chr6 72072832 72073431 -117206123 - L1MC4 LINE L1 0 8042 7440 898 259 106 24 chr6 72073446 72073909 -117205645 - HAL1 LINE L1 -864 1643 1143 315 0 0 0 chr6 72073909 72073944 -117205610 + (CA)n Simple_repeat Simple_repeat 1 35 0 252 326 43 37 chr6 72074538 72074725 -117204829 + L2 LINE L2 3118 3305 -8 233 245 0 0 chr6 72075095 72075148 -117204406 + (TA)n Simple_repeat Simple_repeat 1 53 0 991 205 49 151 chr6 72076669 72077200 -117202354 + MER63C DNA MER1_type 1 477 -453 2152 223 57 4 chr6 72077212 72077723 -117201831 + MER63 DNA MER1_type 511 1048 -13 183 396 0 43 chr6 72077810 72077949 -117201605 - L2 LINE L2 -181 3091 2959 289 221 99 0 chr6 72078246 72078349 -117201205 - L1ME LINE L1 -4939 1638 1410 340 281 49 0 chr6 72078528 72078610 -117200944 - L2 LINE L2 -1018 2296 2211 786 163 0 0 chr6 72079170 72079305 -117200249 - L1PA16 LINE L1 -9 6157 6023 416 169 13 0 chr6 72079324 72079401 -117200153 - MER116 DNA Mariner -2 78 1 30 0 0 0 chr6 72080827 72080857 -117198697 + AT_rich Low_complexity Low_complexity 1 30 0 202 309 119 32 chr6 72080970 72081096 -117198458 - MIR SINE MIR -88 174 38 3730 37 4 0 chr6 72081330 72081785 -117197769 - L1PA4 LINE L1 -3 6152 5696 311 247 25 0 chr6 72081804 72081885 -117197669 - LTR40b LTR ERVL 0 462 380 3476 57 0 0 chr6 72081988 72082429 -117197125 - L1PA2 LINE L1 -19 6136 5696 1056 274 93 19 chr6 72082462 72082892 -117196662 - LTR40c LTR ERVL -3 462 1 180 0 0 0 chr6 72084185 72084205 -117195349 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 321 47 0 0 chr6 72084374 72084417 -117195137 + (TTTAG)n Simple_repeat Simple_repeat 3 45 0 3530 66 10 122 chr6 72084417 72085041 -117194513 - L1PA8 LINE L1 -12 6160 5607 2602 102 0 14 chr6 72085065 72085485 -117194069 + L1P LINE L1 4988 5401 -745 1941 136 3 3 chr6 72086340 72086627 -117192927 - AluSg SINE Alu -21 289 3 222 91 0 0 chr6 72086674 72086707 -117192847 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 874 179 12 6 chr6 72087155 72087323 -117192231 + MER3 DNA MER1_type 2 123 -86 2471 71 0 3 chr6 72087342 72087653 -117191901 - AluY SINE Alu -1 310 1 226 184 0 0 chr6 72087672 72087710 -117191844 + MER3 DNA MER1_type 166 203 -6 22 35 0 0 chr6 72089309 72089338 -117190216 + AT_rich Low_complexity Low_complexity 1 29 0 1879 157 2 83 chr6 72090061 72090482 -117189072 - MLT1B LTR MaLR -1 389 3 344 347 21 14 chr6 72090640 72090784 -117188770 - MIR SINE MIR -116 146 2 514 291 41 88 chr6 72090945 72091240 -117188314 - L2 LINE L2 -5 3308 3028 185 150 0 25 chr6 72091486 72091526 -117188028 + (TC)n Simple_repeat Simple_repeat 1 39 0 1508 187 163 23 chr6 72092067 72092510 -117187044 + MLT1D LTR MaLR 1 505 0 264 342 34 26 chr6 72093579 72093696 -117185858 - MER5B DNA MER1_type -60 118 1 2021 115 38 3 chr6 72093870 72094158 -117185396 + AluSg SINE Alu 1 298 -12 22 0 0 0 chr6 72094579 72094601 -117184953 + AT_rich Low_complexity Low_complexity 1 22 0 1950 127 3 13 chr6 72094601 72094900 -117184654 - AluSx SINE Alu -16 296 1 704 277 41 80 chr6 72095057 72095447 -117184107 - L1ME1 LINE L1 -39 6196 5822 * 789 234 43 8 chr6 72095445 72095680 -117183874 - L1M4 LINE L1 -3437 2709 2467 253 187 0 80 chr6 72095675 72095750 -117183804 - L1ME1 LINE L1 -629 5624 5556 * 913 225 33 39 chr6 72095732 72096066 -117183488 - L1ME1 LINE L1 -3961 2435 2104 1857 276 70 16 chr6 72096073 72096690 -117182864 - L1ME1 LINE L1 -5705 691 42 262 305 38 53 chr6 72096739 72096870 -117182684 + L2 LINE L2 3184 3312 -1 269 337 20 20 chr6 72097039 72097140 -117182414 + MIR SINE MIR 80 180 -82 1829 167 6 3 chr6 72098691 72099002 -117180552 + AluJb SINE Alu 1 312 0 182 384 41 27 chr6 72100008 72100081 -117179473 + MIR SINE MIR 1 74 -188 22 56 0 0 chr6 72100276 72100312 -117179242 + AT_rich Low_complexity Low_complexity 1 36 0 1664 178 126 3 chr6 72100687 72101069 -117178485 + MSTB1 LTR MaLR 4 432 0 5123 111 0 4 chr6 72102159 72103213 -117176341 - L1PA8A LINE L1 -3 6128 5161 24 77 0 0 chr6 72103273 72103325 -117176229 + AT_rich Low_complexity Low_complexity 1 52 0 1283 223 19 0 chr6 72103533 72103836 -117175718 + AluJo SINE Alu 23 330 0 287 128 0 0 chr6 72103857 72103904 -117175650 - L1MA3 LINE L1 0 6305 6259 8718 162 34 17 chr6 72103906 72107032 -117172522 - L1 LINE L1 -2073 5492 2311 1112 216 42 12 chr6 72107030 72107271 -117172283 - L1 LINE L1 -7307 258 11 * 21 36 0 0 chr6 72107374 72107402 -117172152 + AT_rich Low_complexity Low_complexity 1 28 0 27121 51 7 7 chr6 72107516 72110969 -117168585 + L1PA4 LINE L1 1 3454 -2692 261 57 0 0 chr6 72110969 72111004 -117168550 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 7951 28 3 3 chr6 72111004 72112702 -117166852 - L1PA3 LINE L1 -24 6131 4432 2012 54 0 8 chr6 72112680 72112940 -117166614 + L1PA3 LINE L1 4186 4443 -1703 * 15501 44 5 0 chr6 72112935 72115639 -117163915 + L1PA4 LINE L1 3441 6152 -3 207 0 0 0 chr6 72116162 72116185 -117163369 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1186 136 40 0 chr6 72116192 72116391 -117163163 - L1PA14 LINE L1 -4 6157 5951 446 70 0 0 chr6 72116393 72116450 -117163104 + L1 LINE L1 4102 4158 -1988 226 280 98 38 chr6 72116636 72116768 -117162786 - MIR SINE MIR -32 230 91 24 0 0 0 chr6 72118013 72118037 -117161517 + AT_rich Low_complexity Low_complexity 1 24 0 300 286 198 21 chr6 72118045 72118237 -117161317 - MIR SINE MIR -6 256 31 28 0 0 0 chr6 72118498 72118526 -117161028 + AT_rich Low_complexity Low_complexity 1 28 0 1734 144 37 0 chr6 72118559 72118830 -117160724 + AluJb SINE Alu 1 281 -31 200 135 27 0 chr6 72118841 72118878 -117160676 + A-rich Low_complexity Low_complexity 2 39 0 446 223 0 0 chr6 72119925 72120037 -117159517 - L1MA4A LINE L1 -3 6300 6189 189 0 0 0 chr6 72121030 72121051 -117158503 + (TA)n Simple_repeat Simple_repeat 2 22 0 283 238 0 0 chr6 72121051 72121131 -117158423 - L1MC4 LINE L1 -1339 6703 6624 256 287 81 29 chr6 72121295 72121431 -117158123 - MLT1H LTR MaLR -378 171 29 299 337 310 4 chr6 72121586 72121841 -117157713 + L2 LINE L2 2939 3271 -1 32 43 0 0 chr6 72122057 72122103 -117157451 + AT_rich Low_complexity Low_complexity 1 46 0 330 115 64 39 chr6 72122993 72123071 -117156483 + MER116 DNA Mariner 1 80 0 1723 197 0 3 chr6 72123209 72123509 -117156045 + AluJb SINE Alu 3 301 -11 358 351 73 12 chr6 72123583 72123828 -117155726 + L1MC/D LINE L1 5401 5660 -2148 189 107 0 0 chr6 72124518 72124546 -117155008 + (GA)n Simple_repeat Simple_repeat 1 28 0 21 57 0 0 chr6 72124871 72124906 -117154648 + AT_rich Low_complexity Low_complexity 1 35 0 978 229 86 50 chr6 72124932 72125233 -117154321 - MER110 LTR ERV1 -166 325 14 43 47 0 0 chr6 72125346 72125410 -117154144 + AT_rich Low_complexity Low_complexity 1 64 0 606 255 67 36 chr6 72125417 72125678 -117153876 - L1ME4a LINE L1 -265 5856 5584 24 0 0 0 chr6 72127150 72127174 -117152380 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr6 72127209 72127233 -117152321 + AT_rich Low_complexity Low_complexity 1 24 0 373 299 76 21 chr6 72127289 72127433 -117152121 + MIR SINE MIR 17 168 -94 193 314 58 0 chr6 72128166 72128252 -117151302 - MIR SINE MIR -58 204 114 970 284 134 38 chr6 72128918 72130001 -117149553 - L1MEc LINE L1 -2297 4551 3365 539 274 122 88 chr6 72130134 72130863 -117148691 - L1MEc LINE L1 -4020 3009 2256 306 281 21 0 chr6 72130895 72130991 -117148563 - L1M4 LINE L1 -4355 2494 2397 388 330 73 46 chr6 72131107 72131629 -117147925 + L1M4 LINE L1 4500 5035 -1111 298 148 0 0 chr6 72131673 72131727 -117147827 - L1MA4A LINE L1 -2 6301 6248 405 296 126 5 chr6 72132497 72132703 -117146851 - MIR SINE MIR 0 262 32 2369 91 0 19 chr6 72133197 72133515 -117146039 + AluSx SINE Alu 1 312 0 23 0 0 0 chr6 72133865 72133888 -117145666 + AT_rich Low_complexity Low_complexity 1 23 0 299 284 165 15 chr6 72134301 72134442 -117145112 + MIR SINE MIR 13 172 -36 27 29 0 0 chr6 72134679 72134713 -117144841 + AT_rich Low_complexity Low_complexity 1 34 0 229 176 66 77 chr6 72135629 72135720 -117143834 - MIR SINE MIR -39 223 134 366 23 0 0 chr6 72136066 72136109 -117143445 + (TG)n Simple_repeat Simple_repeat 2 44 0 28 29 0 0 chr6 72136119 72136154 -117143400 + AT_rich Low_complexity Low_complexity 1 35 0 1637 169 3 3 chr6 72136198 72136488 -117143066 - L1PA15 LINE L1 0 6165 5876 21 71 0 0 chr6 72137191 72137233 -117142321 + AT_rich Low_complexity Low_complexity 1 42 0 220 200 0 0 chr6 72139965 72140005 -117139549 + (ATG)n Simple_repeat Simple_repeat 2 41 0 2235 232 58 28 chr6 72140100 72140698 -117138856 + MLT1E3 LTR MaLR 6 621 -3 375 246 18 27 chr6 72141802 72141912 -117137642 - MIR SINE MIR 0 262 154 473 94 0 0 chr6 72141922 72141986 -117137568 - THE1-int LTR MaLR -981 599 536 1745 145 86 9 chr6 72141987 72142311 -117137243 - THE1C LTR MaLR -26 349 1 9155 129 46 31 chr6 72142316 72143869 -117135685 - THE1C-int LTR MaLR -4 1576 1 1616 193 50 16 chr6 72143869 72144232 -117135322 - THE1C LTR MaLR 0 375 1 446 270 54 14 chr6 72144236 72144384 -117135170 - MIR SINE MIR -100 162 9 480 270 18 0 chr6 72144384 72144495 -117135059 + MLT1G LTR MaLR 1 113 -482 482 312 17 46 chr6 72144531 72144704 -117134850 + MLT1G LTR MaLR 125 292 -298 243 320 27 0 chr6 72144779 72144854 -117134700 + MLT1G LTR MaLR 370 446 -96 395 143 31 41 chr6 72145157 72145255 -117134299 - L1MA8 LINE L1 0 6291 6195 5050 123 19 8 chr6 72145377 72146176 -117133378 + L1PA15 LINE L1 5355 6162 -3 22 35 0 0 chr6 72146461 72146490 -117133064 + AT_rich Low_complexity Low_complexity 1 29 0 22 106 0 0 chr6 72147149 72147234 -117132320 + AT_rich Low_complexity Low_complexity 1 85 0 22 80 0 0 chr6 72148891 72148941 -117130613 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr6 72149267 72149292 -117130262 + AT_rich Low_complexity Low_complexity 1 25 0 4104 150 25 3 chr6 72149299 72149993 -117129561 - L1PA16 LINE L1 -9 6157 5449 268 290 0 0 chr6 72150658 72150720 -117128834 + L2 LINE L2 3246 3307 -6 212 312 65 22 chr6 72150733 72150871 -117128683 - MIR SINE MIR -21 241 98 210 229 66 33 chr6 72152414 72152475 -117127079 + L3 LINE CR1 1512 1574 -3 1999 123 13 0 chr6 72152670 72152972 -117126582 + AluSc SINE Alu 1 306 -3 537 182 0 0 chr6 72153084 72153171 -117126383 - Tigger7 DNA MER2_type 0 2491 2405 1802 181 24 18 chr6 72153171 72153507 -117126047 + MER2 DNA MER2_type 1 338 -7 1187 215 45 5 chr6 72153536 72153759 -117125795 - Tigger7 DNA MER2_type -499 234 3 1329 206 41 86 chr6 72154507 72154996 -117124558 + MLT1C LTR MaLR 1 467 0 26 88 0 0 chr6 72157627 72157695 -117121859 + AT_rich Low_complexity Low_complexity 1 68 0 427 248 172 7 chr6 72158294 72158439 -117121115 - MIR SINE MIR -85 177 9 452 333 59 38 chr6 72158573 72158861 -117120693 - L2 LINE L2 -684 2630 2337 377 390 11 26 chr6 72159532 72159722 -117119832 + MER5A DNA MER1_type 2 188 -1 619 385 42 15 chr6 72160362 72160882 -117118672 + L2 LINE L2 2150 2683 -631 255 254 8 110 chr6 72161284 72161402 -117118152 + L2 LINE L2 3187 3292 -21 23 0 0 0 chr6 72162367 72162390 -117117164 + AT_rich Low_complexity Low_complexity 1 23 0 1850 144 115 18 chr6 72162518 72162908 -117116646 + MSTA LTR MaLR 1 428 0 768 307 4 31 chr6 72164029 72164283 -117115271 + MIR SINE MIR 11 257 -5 726 256 132 68 chr6 72164555 72164895 -117114659 + LTR33 LTR ERVL 50 411 -110 1582 237 6 20 chr6 72165926 72166268 -117113286 - MLT1A2 LTR MaLR -7 367 31 1986 110 3 11 chr6 72167518 72167800 -117111754 - AluSx SINE Alu -28 284 5 185 0 40 0 chr6 72169691 72169716 -117109838 + (TG)n Simple_repeat Simple_repeat 1 26 0 23 54 0 0 chr6 72169756 72169793 -117109761 + AT_rich Low_complexity Low_complexity 1 37 0 1541 199 27 3 chr6 72170301 72170598 -117108956 + AluJo SINE Alu 3 306 -6 21 0 0 0 chr6 72171216 72171237 -117108317 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 72172177 72172206 -117107348 + AT_rich Low_complexity Low_complexity 1 29 0 217 337 12 60 chr6 72173729 72173895 -117105659 + MIR SINE MIR 80 237 -25 303 28 0 0 chr6 72174044 72174080 -117105474 + (TG)n Simple_repeat Simple_repeat 1 36 0 201 94 0 0 chr6 72174083 72174115 -117105439 + (GA)n Simple_repeat Simple_repeat 1 32 0 183 287 26 87 chr6 72174325 72174440 -117105114 - MIR3 SINE MIR -38 170 63 21 71 0 0 chr6 72176811 72176853 -117102701 + AT_rich Low_complexity Low_complexity 1 42 0 483 344 94 27 chr6 72177009 72177449 -117102105 + L2 LINE L2 2531 3017 -255 235 294 29 0 chr6 72177850 72177918 -117101636 + MIR SINE MIR 45 114 -148 26 30 0 0 chr6 72179734 72179767 -117099787 + AT_rich Low_complexity Low_complexity 1 33 0 2917 127 49 153 chr6 72180917 72181679 -117097875 + L1MB7 LINE L1 5480 6161 -23 1811 111 24 31 chr6 72181682 72182005 -117097549 - AluSx SINE Alu 0 321 1 327 281 52 10 chr6 72182923 72183019 -117096535 + L2 LINE L2 3195 3294 -19 2349 67 3 7 chr6 72183650 72183948 -117095606 - AluSc SINE Alu -12 297 1 2172 130 82 15 chr6 72184181 72184582 -117094972 + MSTA LTR MaLR 1 428 0 25 51 0 0 chr6 72185371 72185410 -117094144 + AT_rich Low_complexity Low_complexity 1 39 0 2190 183 20 14 chr6 72185508 72186141 -117093413 + MER67C LTR ERV1 2 710 0 218 341 34 23 chr6 72186517 72186605 -117092949 - MER5A DNA MER1_type -98 91 3 948 65 0 0 chr6 72186810 72186934 -117092620 + (TA)n Simple_repeat Simple_repeat 1 124 0 737 251 128 38 chr6 72187279 72187702 -117091852 + LTR37B LTR ERV1 8 468 0 22 0 0 0 chr6 72188249 72188271 -117091283 + AT_rich Low_complexity Low_complexity 1 22 0 261 250 24 0 chr6 72189539 72189623 -117089931 + L1MC4 LINE L1 6618 6703 -1339 207 200 0 0 chr6 72189624 72189659 -117089895 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 1934 189 5 20 chr6 72189710 72190106 -117089448 + MLT1B LTR MaLR 1 390 0 2174 123 7 0 chr6 72190280 72190588 -117088966 + AluSq SINE Alu 1 310 -3 2244 86 0 0 chr6 72190640 72190920 -117088634 + AluSc SINE Alu 17 296 -13 25 31 0 0 chr6 72191113 72191145 -117088409 + AT_rich Low_complexity Low_complexity 1 32 0 690 279 139 35 chr6 72191994 72192396 -117087158 - MLT1J LTR MaLR 0 511 68 536 218 78 7 chr6 72193678 72193820 -117085734 + MIR SINE MIR 52 203 -59 330 26 0 0 chr6 72193962 72194001 -117085553 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 655 274 68 8 chr6 72194093 72194327 -117085227 + LTR16C LTR ERVL 224 471 -20 22 0 0 0 chr6 72196262 72196284 -117083270 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 72197075 72197104 -117082450 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr6 72197451 72197485 -117082069 + AT_rich Low_complexity Low_complexity 1 34 0 243 290 76 21 chr6 72198417 72198562 -117080992 + L1ME3A LINE L1 1317 1469 -4927 19955 182 30 45 chr6 72198617 72203605 -117075949 - L1PA12 LINE L1 -69 7537 2472 1946 129 74 34 chr6 72203605 72203955 -117075599 - THE1B LTR MaLR 0 364 1 10116 97 76 17 chr6 72203956 72205447 -117074107 - THE1B-int LTR MaLR -1 1579 1 1664 137 113 30 chr6 72205447 72205783 -117073771 - THE1B LTR MaLR 0 364 1 19955 182 30 45 chr6 72205783 72207611 -117071943 - L1PA12 LINE L1 -5132 2474 24 266 283 104 24 chr6 72207634 72207846 -117071708 + L1ME3A LINE L1 1513 1741 -4655 11705 112 28 37 chr6 72207903 72210193 -117069361 + L1P3 LINE L1 1 2299 -4162 1795 107 0 0 chr6 72210193 72210445 -117069109 + L1PA7 LINE L1 5902 6153 -1 263 321 15 0 chr6 72210906 72211040 -117068514 + L1ME3A LINE L1 4518 4653 -1562 599 297 82 15 chr6 72211265 72211818 -117067736 + L1ME3A LINE L1 4955 5538 -697 331 280 148 71 chr6 72211923 72212105 -117067449 + L1ME3A LINE L1 5743 5938 -301 210 71 0 0 chr6 72213527 72213555 -117065999 + (GA)n Simple_repeat Simple_repeat 2 29 0 31 0 0 0 chr6 72214198 72214229 -117065325 + AT_rich Low_complexity Low_complexity 1 31 0 1161 217 4 22 chr6 72215303 72215529 -117064025 + MER58A DNA MER1_type 3 224 0 275 0 29 0 chr6 72215772 72215807 -117063747 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 397 378 78 5 chr6 72216860 72217064 -117062490 + MIR SINE MIR 23 241 -21 469 318 130 0 chr6 72217071 72217294 -117062260 + MIR SINE MIR 5 256 -6 343 307 58 26 chr6 72221583 72221772 -117057782 - MER117 DNA MER1_type -2 195 1 1359 240 74 16 chr6 72223240 72223727 -117055827 - MER69 DNA AcHobo 0 2526 2012 1299 237 171 5 chr6 72223722 72224160 -117055394 - MER69 DNA AcHobo -1954 572 62 * 207 280 93 56 chr6 72225228 72225335 -117054219 + L3 LINE CR1 1424 1534 -43 300 254 167 8 chr6 72225492 72225618 -117053936 + MIR SINE MIR 117 262 0 2299 80 3 0 chr6 72226902 72227201 -117052353 - AluY SINE Alu -11 300 1 225 340 120 21 chr6 72227462 72227653 -117051901 - MIR SINE MIR -2 260 51 1179 309 125 35 chr6 72227750 72228575 -117050979 + L2 LINE L2 2402 3312 -1 2329 46 0 0 chr6 72229629 72229914 -117049640 - L1PA4 LINE L1 -2350 3796 3512 12899 37 6 0 chr6 72229914 72232252 -117047302 + L1PA4 LINE L1 3813 6155 0 22 56 0 0 chr6 72232588 72232624 -117046930 + AT_rich Low_complexity Low_complexity 1 36 0 350 168 50 59 chr6 72234550 72234651 -117044903 - MER94 DNA DNA -34 100 1 271 360 72 27 chr6 72235039 72235414 -117044140 + L2 LINE L2 1795 2186 -1128 583 231 170 0 chr6 72235479 72235626 -117043928 + MER5B DNA MER1_type 7 178 0 290 284 81 54 chr6 72235626 72235773 -117043781 - MIR SINE MIR -55 207 57 258 56 0 0 chr6 72236040 72236076 -117043478 + (TC)n Simple_repeat Simple_repeat 1 36 0 244 205 39 51 chr6 72236657 72236735 -117042819 - MIR SINE MIR -3 259 183 416 191 61 27 chr6 72236834 72236981 -117042573 - MER104 DNA Tc2 -25 155 4 334 277 0 12 chr6 72236986 72237069 -117042485 - MIR SINE MIR -178 84 3 309 169 39 13 chr6 72238146 72238223 -117041331 + MER116 DNA Mariner 1 79 -1 21 57 0 0 chr6 72238390 72238425 -117041129 + AT_rich Low_complexity Low_complexity 1 35 0 287 282 183 15 chr6 72239311 72239442 -117040112 + MIR SINE MIR 76 228 -34 1761 137 41 0 chr6 72240273 72240590 -117038964 - AluSx SINE Alu 0 328 1 222 62 0 0 chr6 72240848 72240880 -117038674 + (CA)n Simple_repeat Simple_repeat 2 33 0 241 314 0 0 chr6 72241843 72241913 -117037641 + GA-rich Low_complexity Low_complexity 1 70 0 380 286 116 45 chr6 72242086 72242397 -117037157 + MLT1H LTR MaLR 217 549 0 721 325 127 17 chr6 72242819 72243237 -117036317 + LTR16B LTR ERVL 1 464 0 2139 98 27 0 chr6 72244191 72244486 -117035068 - AluSg SINE Alu -6 304 2 6220 150 10 13 chr6 72244592 72246040 -117033514 - L1MA3 LINE L1 0 6305 4862 2357 84 0 0 chr6 72246694 72246993 -117032561 + AluY SINE Alu 1 299 -12 1869 158 0 7 chr6 72247412 72247710 -117031844 - AluSx SINE Alu -16 296 1 25 31 0 0 chr6 72249887 72249919 -117029635 + AT_rich Low_complexity Low_complexity 1 32 0 33 43 0 0 chr6 72251829 72251876 -117027678 + AT_rich Low_complexity Low_complexity 1 47 0 726 306 153 29 chr6 72251903 72252676 -117026878 - L2 LINE L2 -51 3262 2392 2387 25 4 0 chr6 72252724 72253005 -117026549 + L1PA4 LINE L1 5866 6147 -8 202 317 110 0 chr6 72253645 72253727 -117025827 + MIR SINE MIR 56 146 -116 4695 152 31 103 chr6 72254918 72256146 -117023408 + L1MC1 LINE L1 5186 6320 -13 1130 202 118 40 chr6 72256675 72257022 -117022532 + MLT1A2 LTR MaLR 1 374 0 447 308 118 19 chr6 72258548 72258759 -117020795 + MIR SINE MIR 30 261 -1 21 57 0 0 chr6 72259923 72259958 -117019596 + AT_rich Low_complexity Low_complexity 1 35 0 348 312 119 23 chr6 72260056 72260399 -117019155 - L1ME4a LINE L1 -238 5883 5508 2993 261 66 32 chr6 72260579 72261680 -117017874 + L1MEc LINE L1 35 1173 -5223 357 309 35 15 chr6 72261678 72261879 -117017675 + L1MEc LINE L1 3312 3516 -2699 * 2124 233 58 35 chr6 72261932 72262714 -117016840 + L1MEc LINE L1 3869 4668 -1547 277 270 79 0 chr6 72262785 72262874 -117016680 + L1MA10 LINE L1 6176 6271 -63 35 101 0 0 chr6 72263156 72263275 -117016279 + AT_rich Low_complexity Low_complexity 1 119 0 1642 170 10 42 chr6 72263880 72264191 -117015363 + AluJb SINE Alu 1 301 -11 371 285 100 0 chr6 72264324 72264454 -117015100 - MIR SINE MIR -10 252 110 199 316 138 10 chr6 72265506 72265702 -117013852 + MIR SINE MIR 15 235 -27 21 0 0 0 chr6 72265986 72266007 -117013547 + AT_rich Low_complexity Low_complexity 1 21 0 1363 202 18 90 chr6 72268373 72268760 -117010794 + MLT1A1 LTR MaLR 3 361 -4 375 23 0 0 chr6 72268969 72269013 -117010541 + (A)n Simple_repeat Simple_repeat 1 44 0 1057 93 0 0 chr6 72269025 72269165 -117010389 + AluSg/x SINE Alu 166 305 -7 22 94 0 0 chr6 72269527 72269591 -117009963 + AT_rich Low_complexity Low_complexity 1 64 0 226 188 0 21 chr6 72269881 72269929 -117009625 + (TA)n Simple_repeat Simple_repeat 1 47 0 289 203 0 0 chr6 72270076 72270140 -117009414 - L1MA8 LINE L1 -2 6289 6226 439 98 16 0 chr6 72270140 72270201 -117009353 + Tigger2 DNA MER2_type 1 62 -2656 2602 131 44 21 chr6 72270208 72270308 -117009246 + Tigger2 DNA MER2_type 2280 2376 -342 180 0 0 0 chr6 72270308 72270328 -117009226 + (TCC)n Simple_repeat Simple_repeat 2 21 0 2602 131 44 21 chr6 72270328 72270655 -117008899 + Tigger2 DNA MER2_type 2376 2717 -1 2488 176 30 52 chr6 72270655 72270964 -117008590 - L1MA8 LINE L1 -63 6228 5914 2153 65 28 3 chr6 72270964 72271255 -117008299 + AluY SINE Alu 1 298 -13 2488 176 30 52 chr6 72271255 72271434 -117008120 - L1MA8 LINE L1 -377 5914 5753 1859 167 132 5 chr6 72271434 72271812 -117007742 - MSTA LTR MaLR 0 428 3 2488 176 30 52 chr6 72271812 72271919 -117007635 - L1MA8 LINE L1 -538 5753 5645 1771 198 43 3 chr6 72271920 72272248 -117007306 - MER7A DNA MER2_type -2 344 6 2015 125 34 43 chr6 72272252 72272848 -117006706 - L1MA8 LINE L1 -653 5647 5051 212 393 0 18 chr6 72274124 72274236 -117005318 - MIR3 SINE MIR -12 196 87 242 299 81 46 chr6 72275073 72275270 -117004284 - L1MEd LINE L1 -856 1887 1523 232 335 50 22 chr6 72275544 72275726 -117003828 - L1MEd LINE L1 -5059 1313 1127 23 0 0 0 chr6 72275797 72275820 -117003734 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 72276561 72276583 -117002971 + AT_rich Low_complexity Low_complexity 1 22 0 829 241 19 19 chr6 72277404 72277620 -117001934 + MER20 DNA MER1_type 1 216 -3 203 226 47 162 chr6 72277750 72277985 -117001569 + L2 LINE L2 3105 3312 -1 22 94 0 0 chr6 72278539 72278603 -117000951 + AT_rich Low_complexity Low_complexity 1 64 0 7585 179 39 196 chr6 72278738 72278962 -117000592 + L1MA4A LINE L1 191 448 -6401 417 227 0 0 chr6 72278962 72279037 -117000517 - AluJ/FLAM SINE Alu -227 75 1 7585 179 39 196 chr6 72279037 72280398 -116999156 + L1MA4A LINE L1 448 2020 -4829 215 0 0 62 chr6 72280398 72280430 -116999124 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1083 199 62 62 chr6 72280430 72280706 -116998848 - AluJo SINE Alu -36 276 1 7585 179 39 196 chr6 72280706 72281975 -116997579 + L1MA4A LINE L1 2018 2894 -3955 5308 163 24 21 chr6 72281981 72283247 -116996307 + L1MA4A LINE L1 5726 7000 -5 2107 132 0 0 chr6 72283254 72283558 -116995996 + AluSx SINE Alu 1 304 -8 324 0 0 0 chr6 72283561 72283597 -116995957 + (TA)n Simple_repeat Simple_repeat 1 36 0 25 65 0 0 chr6 72283620 72283666 -116995888 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr6 72283989 72284019 -116995535 + AT_rich Low_complexity Low_complexity 1 30 0 256 258 32 11 chr6 72284976 72285069 -116994485 - LTR33 LTR ERVL 0 521 427 185 322 17 0 chr6 72285838 72285897 -116993657 + L2 LINE L2 3249 3308 -5 483 281 55 32 chr6 72286062 72286279 -116993275 - MER112 DNA MER1_type -38 222 1 369 0 0 0 chr6 72286359 72286400 -116993154 + (TAA)n Simple_repeat Simple_repeat 2 42 0 321 345 36 0 chr6 72286954 72287064 -116992490 + MIR SINE MIR 76 189 -73 672 188 8 0 chr6 72287100 72287256 -116992298 - FLAM_A SINE Alu 0 157 1 454 122 0 24 chr6 72290954 72291036 -116988518 + MADE1 DNA Mariner 1 80 0 21 0 0 0 chr6 72291453 72291474 -116988080 + AT_rich Low_complexity Low_complexity 1 21 0 238 254 0 0 chr6 72292677 72292732 -116986822 + (TG)n Simple_repeat Simple_repeat 2 56 0 250 229 0 62 chr6 72292744 72292840 -116986714 + L1MC4 LINE L1 6614 6703 -1339 257 241 37 0 chr6 72292840 72292894 -116986660 + (CATG)n Simple_repeat Simple_repeat 4 59 0 227 146 91 0 chr6 72292895 72292950 -116986604 + L1MCa LINE L1 2006 2065 -4361 229 243 0 14 chr6 72292969 72293039 -116986515 - L1MCa LINE L1 -4363 2063 1995 281 317 10 0 chr6 72293039 72293140 -116986414 + (TA)n Simple_repeat Simple_repeat 2 103 0 232 250 95 24 chr6 72293140 72293224 -116986330 + L1MC4 LINE L1 6614 6703 -1339 234 256 128 0 chr6 72293238 72293316 -116986238 - L1MC4 LINE L1 -1341 6701 6614 256 242 0 63 chr6 72293329 72293424 -116986130 + L1MC4 LINE L1 6615 6703 -1339 252 271 47 0 chr6 72293356 72293441 -116986113 - L1MC4 LINE L1 -1339 6703 6615 * 296 223 0 43 chr6 72293446 72293540 -116986014 - L1MC4 LINE L1 -1339 6703 6614 705 231 0 0 chr6 72293540 72293713 -116985841 + (TA)n Simple_repeat Simple_repeat 2 174 0 274 261 0 22 chr6 72293746 72293838 -116985716 + L1MC4 LINE L1 6614 6703 -1339 252 222 0 16 chr6 72293871 72293934 -116985620 + L1MCa LINE L1 2006 2067 -4359 226 182 121 0 chr6 72293875 72293941 -116985613 - L1MC3 LINE L1 -1140 6645 6572 * 249 322 0 0 chr6 72293942 72294032 -116985522 + L1MC4 LINE L1 6614 6703 -1339 251 333 0 0 chr6 72294036 72294126 -116985428 + L1MC4 LINE L1 6614 6703 -1339 233 179 0 77 chr6 72294057 72294135 -116985419 - L1MC3 LINE L1 -1142 6643 6572 * 222 171 0 0 chr6 72294136 72294177 -116985377 + (TA)n Simple_repeat Simple_repeat 2 42 0 531 285 68 63 chr6 72294225 72294432 -116985122 - MIR SINE MIR -31 231 24 1699 97 0 4 chr6 72294434 72294662 -116984892 + AluSc SINE Alu 76 302 -7 333 305 130 11 chr6 72295173 72295350 -116984204 + MIR SINE MIR 59 256 -6 342 0 0 0 chr6 72295351 72295389 -116984165 + (CAT)n Simple_repeat Simple_repeat 3 40 0 7205 109 6 17 chr6 72295389 72296458 -116983096 + MER11C LTR ERVK 1 1057 -14 361 351 73 58 chr6 72296970 72297626 -116981928 + L2 LINE L2 742 1407 -1907 383 212 77 104 chr6 72299616 72299838 -116979716 - L2 LINE L2 0 3313 3098 420 133 11 22 chr6 72299839 72299929 -116979625 + GA-rich Low_complexity Low_complexity 2 90 0 805 313 36 27 chr6 72299939 72300384 -116979170 - L2 LINE L2 -202 3111 2660 358 239 64 0 chr6 72301891 72302000 -116977554 + MER103 DNA DNA 8 123 -43 25 31 0 0 chr6 72304122 72304154 -116975400 + AT_rich Low_complexity Low_complexity 1 32 0 380 111 14 0 chr6 72305833 72305905 -116973649 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 224 146 24 0 chr6 72306234 72306275 -116973279 + CT-rich Low_complexity Low_complexity 1 42 0 538 191 15 15 chr6 72306276 72306412 -116973142 + (CATA)n Simple_repeat Simple_repeat 2 137 0 219 316 13 0 chr6 72307205 72307281 -116972273 + MIR SINE MIR 69 146 -62 225 211 0 0 chr6 72310044 72310101 -116969453 + CT-rich Low_complexity Low_complexity 1 57 0 214 217 22 0 chr6 72310367 72310413 -116969141 + L2 LINE L2 3256 3302 -11 1845 146 42 0 chr6 72311286 72311574 -116967980 + AluSx SINE Alu 1 300 -12 400 308 84 0 chr6 72312643 72312750 -116966804 + MER91C DNA MER1_type 25 140 0 2176 114 0 0 chr6 72313073 72313401 -116966153 + AluSg SINE Alu 3 330 0 193 320 21 21 chr6 72314020 72314070 -116965484 - L2 LINE L2 -99 3214 3162 306 0 0 0 chr6 72314070 72314104 -116965450 + (CA)n Simple_repeat Simple_repeat 1 34 0 193 320 21 21 chr6 72314104 72314150 -116965404 - L2 LINE L2 -150 3163 3118 460 330 140 24 chr6 72314152 72314533 -116965021 - L2 LINE L2 -121 3192 2762 293 305 30 69 chr6 72314639 72314770 -116964784 - L2 LINE L2 -2 3270 3145 227 239 0 42 chr6 72314861 72314932 -116964622 - L1MC3 LINE L1 -1118 6667 6600 405 248 28 62 chr6 72315020 72315165 -116964389 - MIR SINE MIR -49 213 74 448 90 0 112 chr6 72317309 72317398 -116962156 + MADE1 DNA Mariner 2 80 0 3195 163 86 13 chr6 72318992 72319617 -116959937 + LTR51 LTR ERV1 1 671 0 2885 178 36 92 chr6 72319646 72320513 -116959041 + MER67C-int LTR ERV1 2408 3213 -1723 2008 221 27 80 chr6 72320650 72320814 -116958740 + MER67C-int LTR ERV1 3216 3387 -1549 2398 73 0 0 chr6 72320814 72321116 -116958438 + AluY SINE Alu 1 302 -9 2008 221 27 80 chr6 72321116 72321585 -116957969 + MER67C-int LTR ERV1 3387 3815 -1121 455 0 0 18 chr6 72321625 72321681 -116957873 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 786 167 8 0 chr6 72321683 72321815 -116957739 - FLAM_C SINE Alu 0 133 1 2035 190 21 23 chr6 72321817 72322248 -116957306 + MER67C-int LTR ERV1 3824 4253 -683 309 187 131 37 chr6 72322251 72322358 -116957196 + LTR37A LTR ERV1 1 117 -309 457 289 30 86 chr6 72322387 72322688 -116956866 + MER67C-int LTR ERV1 4411 4694 -242 27 0 0 0 chr6 72323715 72323742 -116955812 + AT_rich Low_complexity Low_complexity 1 27 0 592 288 77 34 chr6 72324440 72324673 -116954881 + MIR SINE MIR 2 244 -18 193 261 0 0 chr6 72324694 72324740 -116954814 - MIR SINE MIR -147 115 70 25 0 0 0 chr6 72324842 72324867 -116954687 + AT_rich Low_complexity Low_complexity 1 25 0 1907 173 22 22 chr6 72325026 72325396 -116954158 - MLT1A2 LTR MaLR -2 372 3 430 297 13 32 chr6 72325488 72325643 -116953911 + MIR SINE MIR 6 157 -105 3842 161 20 8 chr6 72327472 72328174 -116951380 + MER67C LTR ERV1 1 710 0 786 287 109 35 chr6 72328262 72328628 -116950926 + LTR16C LTR ERVL 96 488 -3 307 304 128 47 chr6 72328807 72329064 -116950490 + HAL1 LINE L1 1275 1552 -955 2047 123 3 10 chr6 72329145 72329446 -116950108 - AluSc SINE Alu -10 299 1 219 255 0 0 chr6 72331032 72331079 -116948475 + (TG)n Simple_repeat Simple_repeat 2 48 0 216 0 0 0 chr6 72332090 72332114 -116947440 + (TA)n Simple_repeat Simple_repeat 2 25 0 307 327 39 48 chr6 72333323 72333531 -116946023 - L2 LINE L2 -337 2977 2772 266 291 13 0 chr6 72333948 72334027 -116945527 - MER94 DNA DNA -17 117 38 399 322 187 55 chr6 72335040 72335241 -116944313 - L3 LINE CR1 -155 1422 1249 2074 111 4 0 chr6 72335241 72335520 -116944034 - AluSg SINE Alu -30 280 1 399 322 187 55 chr6 72335520 72336119 -116943435 - L3 LINE CR1 -328 1249 516 249 222 19 0 chr6 72337325 72337379 -116942175 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 651 186 16 23 chr6 72338424 72338553 -116941001 - MLT1D LTR MaLR -377 128 1 198 71 0 0 chr6 72338555 72338583 -116940971 + (TG)n Simple_repeat Simple_repeat 1 28 0 388 247 25 0 chr6 72338726 72338807 -116940747 - MER117 DNA MER1_type -47 150 68 22 70 0 0 chr6 72340761 72340804 -116938750 + AT_rich Low_complexity Low_complexity 1 43 0 27 29 0 0 chr6 72340915 72340949 -116938605 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr6 72341232 72341268 -116938286 + AT_rich Low_complexity Low_complexity 1 36 0 631 178 0 0 chr6 72341616 72341717 -116937837 + AluJb SINE Alu 181 281 -31 291 54 0 0 chr6 72341723 72341760 -116937794 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 11010 77 12 8 chr6 72341890 72343446 -116936108 + L1P LINE L1 2422 3983 -2163 26 74 0 0 chr6 72343829 72343883 -116935671 + AT_rich Low_complexity Low_complexity 1 54 0 302 296 67 62 chr6 72344114 72344533 -116935021 + L1MEc LINE L1 871 1291 -4914 295 276 71 25 chr6 72344658 72344874 -116934680 + L1MEc LINE L1 1516 1739 -864 278 331 63 14 chr6 72346745 72346887 -116932667 + MIR SINE MIR 74 222 -40 2174 137 19 25 chr6 72347026 72347390 -116932164 + THE1B LTR MaLR 1 362 -2 11164 100 13 3 chr6 72347392 72348957 -116930597 + THE1B-int LTR MaLR 1 1580 0 1344 161 75 34 chr6 72348957 72349275 -116930279 + THE1B LTR MaLR 1 332 -43 190 286 0 0 chr6 72350181 72350223 -116929331 + MIR SINE MIR 204 245 -17 848 332 136 24 chr6 72350494 72351400 -116928154 + L2 LINE L2 2256 3259 -54 36 62 0 0 chr6 72351909 72351973 -116927581 + AT_rich Low_complexity Low_complexity 1 64 0 29 47 0 0 chr6 72352013 72352056 -116927498 + AT_rich Low_complexity Low_complexity 1 43 0 245 360 59 20 chr6 72353654 72353807 -116925747 - MIR3 SINE MIR -4 204 46 316 213 19 12 chr6 72354910 72355070 -116924484 + (TA)n Simple_repeat Simple_repeat 1 161 0 28 29 0 0 chr6 72355075 72355110 -116924444 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr6 72355466 72355489 -116924065 + AT_rich Low_complexity Low_complexity 1 23 0 184 239 0 18 chr6 72356631 72356744 -116922810 + (TA)n Simple_repeat Simple_repeat 2 112 0 333 0 0 0 chr6 72356744 72356781 -116922773 + (TG)n Simple_repeat Simple_repeat 2 38 0 1926 60 28 0 chr6 72356834 72357085 -116922469 - AluY SINE Alu -53 258 1 3406 242 50 46 chr6 72357671 72359274 -116920280 - L1M4 LINE L1 -2105 4041 2252 3233 119 25 52 chr6 72359274 72359864 -116919690 + L1PA13 LINE L1 5590 6163 0 3406 242 50 46 chr6 72359864 72359942 -116919612 - L1M4 LINE L1 -3894 2252 2176 411 154 8 41 chr6 72360365 72360488 -116919066 + (TA)n Simple_repeat Simple_repeat 2 120 0 25 0 0 0 chr6 72361974 72361999 -116917555 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr6 72362945 72362968 -116916586 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 72363005 72363033 -116916521 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 72363445 72363473 -116916081 + AT_rich Low_complexity Low_complexity 1 28 0 715 270 74 35 chr6 72363941 72364401 -116915153 - L1MC5 LINE L1 -228 7733 7256 1091 240 76 22 chr6 72364843 72365156 -116914398 - AluJb SINE Alu 0 330 3 367 237 0 82 chr6 72365782 72365879 -116913675 + MER21B LTR ERV1 1 89 -774 2508 210 66 52 chr6 72365948 72366647 -116912907 + MER21B LTR ERV1 98 806 -57 31 58 0 0 chr6 72367568 72367620 -116911934 + AT_rich Low_complexity Low_complexity 1 52 0 23 54 0 0 chr6 72369161 72369198 -116910356 + AT_rich Low_complexity Low_complexity 1 37 0 1264 232 46 3 chr6 72369245 72369573 -116909981 + L1ME1 LINE L1 5657 5998 -168 10997 177 31 6 chr6 72369590 72370574 -116908980 + L1MA2 LINE L1 844 1802 -5763 2974 87 4 66 chr6 72370574 72371045 -116908509 + MLT2A1 LTR ERVL 1 442 -2 10997 177 31 6 chr6 72371045 72372064 -116907490 + L1MA2 LINE L1 1802 2897 -4668 206 158 26 26 chr6 72372066 72372142 -116907412 + (TA)n Simple_repeat Simple_repeat 2 77 0 228 95 0 0 chr6 72372143 72372185 -116907369 + L1MA2 LINE L1 2900 2941 -4624 226 94 0 0 chr6 72372185 72372217 -116907337 + Alu SINE Alu 174 205 -94 4024 175 43 55 chr6 72372226 72373225 -116906329 + L1MA2 LINE L1 4558 5544 -2021 6184 126 13 9 chr6 72373231 72374235 -116905319 + L1MA2 LINE L1 6715 7722 -1 1033 171 25 15 chr6 72374801 72375000 -116904554 + L1PA15 LINE L1 5963 6163 -2 226 339 55 28 chr6 72375212 72375321 -116904233 + MIR3 SINE MIR 86 197 -11 330 80 0 0 chr6 72377685 72377735 -116901819 + (CA)n Simple_repeat Simple_repeat 2 51 0 189 0 0 0 chr6 72378623 72378644 -116900910 + (CAATA)n Simple_repeat Simple_repeat 2 22 0 186 167 0 0 chr6 72378674 72378710 -116900844 + (CA)n Simple_repeat Simple_repeat 2 37 0 1694 275 24 35 chr6 72378799 72379396 -116900158 - MLT1G LTR MaLR 0 590 1 2236 116 0 0 chr6 72379488 72379791 -116899763 + AluSq SINE Alu 1 303 -10 21 36 0 0 chr6 72382364 72382392 -116897162 + AT_rich Low_complexity Low_complexity 1 28 0 1558 163 0 95 chr6 72382629 72382966 -116896588 + AluJb SINE Alu 8 312 0 354 143 57 0 chr6 72383256 72383326 -116896228 - MER31B LTR ERV1 -392 74 1 358 282 243 24 chr6 72383370 72383625 -116895929 - L2 LINE L2 -964 2350 2040 193 245 204 0 chr6 72383639 72383688 -116895866 - L2 LINE L2 -1528 1786 1728 22 0 0 0 chr6 72383692 72383714 -116895840 + AT_rich Low_complexity Low_complexity 1 22 0 423 347 191 6 chr6 72383754 72384094 -116895460 + L2 LINE L2 2906 3308 -5 222 118 0 0 chr6 72384389 72384423 -116895131 + (A)n Simple_repeat Simple_repeat 1 34 0 29 28 0 0 chr6 72384463 72384499 -116895055 + AT_rich Low_complexity Low_complexity 1 36 0 348 24 0 0 chr6 72386557 72386598 -116892956 + (CA)n Simple_repeat Simple_repeat 2 42 0 379 123 14 14 chr6 72387369 72387442 -116892112 + T-rich Low_complexity Low_complexity 3 75 0 341 273 20 10 chr6 72387467 72387566 -116891988 + L1ME2 LINE L1 4028 4127 -2019 * 496 270 45 0 chr6 72387565 72387743 -116891811 + L1ME2 LINE L1 4767 4952 -1194 427 255 49 22 chr6 72387761 72387945 -116891609 + L1ME2 LINE L1 4941 5129 -1017 1164 167 19 13 chr6 72387945 72388181 -116891373 - L1M LINE L1 -743 5403 5182 5175 77 19 4 chr6 72388181 72388881 -116890673 + L1PA7 LINE L1 5443 6153 -1 353 241 52 9 chr6 72388911 72389027 -116890527 + L1ME2 LINE L1 5178 5298 -848 1877 231 110 31 chr6 72389050 72389704 -116889850 + L1ME2 LINE L1 5451 6156 -8 923 227 9 22 chr6 72389750 72389979 -116889575 - L1MA9 LINE L1 -1100 5046 4821 * 3156 203 40 13 chr6 72389977 72390977 -116888577 + L1MA9 LINE L1 5043 6075 -114 445 119 0 60 chr6 72390980 72391064 -116888490 - MER1B DNA MER1_type -2 331 253 1637 141 22 25 chr6 72391078 72391354 -116888200 - MER1B DNA MER1_type -64 275 1 597 219 44 44 chr6 72391355 72391560 -116887994 + L1MA9 LINE L1 6070 6274 -38 260 296 78 45 chr6 72391725 72392083 -116887471 + L1ME3A LINE L1 3641 4010 -2136 698 312 109 31 chr6 72392238 72392844 -116886710 + L1ME3A LINE L1 4217 4869 -1277 2254 203 48 15 chr6 72392860 72393338 -116886216 + MLT1D LTR MaLR 8 501 -4 357 222 43 8 chr6 72393380 72393497 -116886057 + L1ME3A LINE L1 4928 5048 -1098 542 259 115 27 chr6 72393673 72394051 -116885503 + L1ME3A LINE L1 5282 5701 -461 322 319 62 0 chr6 72394627 72394740 -116884814 + L1ME3A LINE L1 5762 5881 -289 24 53 0 0 chr6 72397356 72397394 -116882160 + AT_rich Low_complexity Low_complexity 1 38 0 297 0 0 0 chr6 72397638 72397671 -116881883 + (T)n Simple_repeat Simple_repeat 1 33 0 970 237 41 7 chr6 72398253 72398523 -116881031 - L1M4 LINE L1 -1286 5671 5393 1562 154 15 8 chr6 72398542 72398809 -116880745 - Tigger2 DNA MER2_type -11 2707 2439 2964 177 59 2 chr6 72398859 72399417 -116880137 - Tigger2 DNA MER2_type -1974 744 155 2193 243 45 42 chr6 72399428 72399803 -116879751 - L1M4 LINE L1 -2163 4794 4422 16220 40 1 1 chr6 72399803 72402562 -116876992 - L1PA4 LINE L1 0 6155 3396 2193 243 45 42 chr6 72402562 72403153 -116876401 - L1M4 LINE L1 -2535 4422 3825 625 303 71 28 chr6 72403149 72403472 -116876082 - L1M4 LINE L1 -5916 943 607 * 628 211 16 48 chr6 72403566 72403769 -116875785 + MLT1E1 LTR MaLR 350 627 -27 395 278 53 25 chr6 72403769 72403986 -116875568 + MER87 LTR ERV1 319 544 -12 269 313 8 16 chr6 72404202 72404330 -116875224 - L1MEd LINE L1 -4975 1144 1018 1674 200 58 0 chr6 72404580 72404925 -116874629 + MLT1A1 LTR MaLR 1 365 0 207 69 0 0 chr6 72405350 72405379 -116874175 + (TC)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr6 72406047 72406068 -116873486 + AT_rich Low_complexity Low_complexity 1 21 0 1570 202 0 14 chr6 72406236 72406528 -116873026 + AluJo SINE Alu 13 300 -12 1093 224 27 38 chr6 72406707 72406970 -116872584 + MER76 LTR ERV 1 260 -428 446 294 98 19 chr6 72407019 72407233 -116872321 + MER76 LTR ERV 424 654 -34 23 0 0 0 chr6 72408016 72408039 -116871515 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr6 72408891 72408920 -116870634 + AT_rich Low_complexity Low_complexity 1 29 0 33 56 0 0 chr6 72409487 72409541 -116870013 + AT_rich Low_complexity Low_complexity 1 54 0 307 341 56 28 chr6 72409664 72409843 -116869711 - MIR SINE MIR -4 258 75 1122 306 83 21 chr6 72410097 72410580 -116868974 + LTR33 LTR ERVL 1 513 -8 22 0 0 0 chr6 72411315 72411337 -116868217 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr6 72411775 72411812 -116867742 + (TG)n Simple_repeat Simple_repeat 1 37 0 2186 204 102 62 chr6 72412446 72413240 -116866314 + LTR1B LTR ERV1 1 826 0 180 111 0 0 chr6 72415213 72415240 -116864314 + (TTAGGG)n Simple_repeat Simple_repeat 4 30 0 241 145 24 84 chr6 72416906 72416989 -116862565 + A-rich Low_complexity Low_complexity 6 83 0 12199 111 6 27 chr6 72417065 72419157 -116860397 - L1P3 LINE L1 -4397 2064 8 31 26 0 0 chr6 72420033 72420071 -116859483 + AT_rich Low_complexity Low_complexity 1 38 0 268 313 236 19 chr6 72421180 72421388 -116858166 + MIR SINE MIR 8 260 -2 21 0 0 0 chr6 72422697 72422718 -116856836 + AT_rich Low_complexity Low_complexity 1 21 0 5359 152 16 32 chr6 72422818 72423330 -116856224 - L1MA6 LINE L1 -1 7718 7199 333 0 0 0 chr6 72423330 72423367 -116856187 + (TG)n Simple_repeat Simple_repeat 2 38 0 5359 152 16 32 chr6 72423367 72424616 -116854938 - L1MA6 LINE L1 -520 7199 5992 629 154 0 8 chr6 72424634 72424764 -116854790 + L1 LINE L1 4353 4481 -1665 1337 178 77 115 chr6 72424765 72425114 -116854440 + Tigger3(Golem) DNA MER2_type 13 3029 0 8484 223 33 29 chr6 72425114 72428764 -116850790 - L1MA6 LINE L1 -1917 5648 1990 336 350 19 0 chr6 72429021 72429178 -116850376 - L1MA6 LINE L1 -6649 840 681 6633 148 17 1 chr6 72429267 72430350 -116849204 + Tigger1 DNA MER2_type 1318 2417 -1 947 304 153 0 chr6 72430814 72431225 -116848329 - L2 LINE L2 -498 2816 2343 580 140 10 20 chr6 72431726 72431826 -116847728 - THE1B LTR MaLR 0 364 266 * 2455 226 134 118 chr6 72431815 72433250 -116846304 - MER52A LTR ERV1 -298 1457 1 574 259 64 32 chr6 72433293 72433606 -116845948 + L1MEc LINE L1 1569 1891 -4505 * 1999 267 64 25 chr6 72433597 72433767 -116845787 + L1MEc LINE L1 2643 2805 -3410 1086 23 0 0 chr6 72433767 72433895 -116845659 - L1PA2 LINE L1 -2 6153 6026 1999 267 64 25 chr6 72433895 72434786 -116844768 + L1MEc LINE L1 2805 3746 -2469 9053 37 0 1 chr6 72434858 72435992 -116843562 - L1PA2 LINE L1 -2602 3544 2412 15051 34 0 2 chr6 72435992 72438584 -116840970 + L1PA2 LINE L1 3548 6155 0 319 304 89 0 chr6 72439457 72439569 -116839985 - L2 LINE L2 0 3313 3192 21 89 0 0 chr6 72439780 72439836 -116839718 + AT_rich Low_complexity Low_complexity 1 56 0 2921 223 81 12 chr6 72440354 72441846 -116837708 - L1MB7 LINE L1 -10 6174 4582 849 161 15 0 chr6 72441865 72441995 -116837559 - Tigger2 DNA MER2_type -11 2707 2576 30 27 0 0 chr6 72443455 72443492 -116836062 + AT_rich Low_complexity Low_complexity 1 37 0 288 0 0 0 chr6 72443737 72443769 -116835785 + (T)n Simple_repeat Simple_repeat 1 32 0 242 369 127 26 chr6 72443873 72444339 -116835215 - L2 LINE L2 -649 2665 2153 318 26 0 0 chr6 72445126 72445165 -116834389 + (TC)n Simple_repeat Simple_repeat 2 40 0 8782 40 0 0 chr6 72445478 72446559 -116832995 - L1PA2 LINE L1 -3766 2380 1300 24900 30 0 2 chr6 72446559 72450333 -116829221 + L1PA2 LINE L1 2385 6155 0 319 304 89 0 chr6 72451206 72451318 -116828236 - L2 LINE L2 0 3313 3192 21 89 0 0 chr6 72451529 72451585 -116827969 + AT_rich Low_complexity Low_complexity 1 56 0 2921 223 81 12 chr6 72452103 72453595 -116825959 - L1MB7 LINE L1 -10 6985 5393 1546 154 15 8 chr6 72453614 72453881 -116825673 - Tigger2 DNA MER2_type -11 2707 2439 2931 177 59 2 chr6 72453931 72454489 -116825065 - Tigger2 DNA MER2_type -1974 744 155 2101 242 45 43 chr6 72454500 72454875 -116824679 - L1MB7 LINE L1 -2163 4794 4421 16253 40 1 1 chr6 72454875 72457634 -116821920 - L1PA4 LINE L1 0 6155 3396 2101 242 45 43 chr6 72457634 72458226 -116821328 - L1MB7 LINE L1 -2536 4421 3825 629 322 65 22 chr6 72458222 72458545 -116821009 - L1MB7 LINE L1 -5916 943 607 * 630 206 19 50 chr6 72458639 72458842 -116820712 + MLT1E1 LTR MaLR 325 627 -27 396 278 53 25 chr6 72458842 72459059 -116820495 + MER87 LTR ERV1 319 544 -12 255 313 8 16 chr6 72459275 72459403 -116820151 - L1MEd LINE L1 -4975 1144 1018 1687 200 58 0 chr6 72459653 72459998 -116819556 + MLT1A1 LTR MaLR 1 365 0 207 69 0 0 chr6 72460423 72460452 -116819102 + (TC)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr6 72461120 72461141 -116818413 + AT_rich Low_complexity Low_complexity 1 21 0 1584 202 0 14 chr6 72461309 72461601 -116817953 + AluJo SINE Alu 13 300 -12 1105 224 27 38 chr6 72461780 72462043 -116817511 + MER76 LTR ERV 1 260 -428 455 294 98 19 chr6 72462092 72462306 -116817248 + MER76 LTR ERV 424 654 -34 23 0 0 0 chr6 72463089 72463112 -116816442 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr6 72463964 72463993 -116815561 + AT_rich Low_complexity Low_complexity 1 29 0 33 56 0 0 chr6 72464560 72464614 -116814940 + AT_rich Low_complexity Low_complexity 1 54 0 296 341 56 28 chr6 72464737 72464916 -116814638 - MIR SINE MIR -4 258 75 1131 306 83 21 chr6 72465170 72465653 -116813901 + LTR33 LTR ERVL 1 513 -8 22 0 0 0 chr6 72466388 72466410 -116813144 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr6 72466848 72466885 -116812669 + (TG)n Simple_repeat Simple_repeat 1 37 0 2270 204 102 62 chr6 72467519 72468313 -116811241 + LTR1B LTR ERV1 1 826 0 201 74 0 0 chr6 72470286 72470313 -116809241 + (TTAGGG)n Simple_repeat Simple_repeat 4 30 0 241 145 24 84 chr6 72471979 72472062 -116807492 + A-rich Low_complexity Low_complexity 6 83 0 12199 108 7 47 chr6 72472138 72474230 -116805324 - L1P3 LINE L1 -4397 2064 8 31 26 0 0 chr6 72475106 72475144 -116804410 + AT_rich Low_complexity Low_complexity 1 38 0 268 313 236 19 chr6 72476254 72476462 -116803092 + MIR SINE MIR 8 260 -2 21 0 0 0 chr6 72477771 72477792 -116801762 + AT_rich Low_complexity Low_complexity 1 21 0 5359 152 16 32 chr6 72477892 72478404 -116801150 - L1MA6 LINE L1 -1 7718 7199 279 0 0 0 chr6 72478404 72478435 -116801119 + (TG)n Simple_repeat Simple_repeat 2 32 0 5359 152 16 32 chr6 72478435 72479684 -116799870 - L1MA6 LINE L1 -520 7199 5992 653 146 0 8 chr6 72479702 72479832 -116799722 + L1 LINE L1 4353 4481 -1665 1337 178 77 115 chr6 72479833 72480182 -116799372 + Tigger3(Golem) DNA MER2_type 13 3028 -1 8484 223 33 29 chr6 72480182 72483832 -116795722 - L1MA6 LINE L1 -1917 5648 1990 336 350 19 0 chr6 72484089 72484246 -116795308 - L1MA6 LINE L1 -6649 840 681 6660 147 17 1 chr6 72484335 72485418 -116794136 + Tigger1 DNA MER2_type 1318 2417 -1 947 304 153 0 chr6 72485882 72486293 -116793261 - L2 LINE L2 -498 2816 2343 580 140 10 20 chr6 72486794 72486894 -116792660 - THE1B LTR MaLR 0 364 266 * 2471 225 134 118 chr6 72486883 72488318 -116791236 - MER52A LTR ERV1 -298 1457 1 574 259 64 32 chr6 72488361 72488674 -116790880 + L1ME1 LINE L1 1569 1891 -4505 * 1999 267 64 25 chr6 72488665 72488835 -116790719 + L1ME1 LINE L1 2643 2805 -3410 1086 23 0 0 chr6 72488835 72488963 -116790591 - L1PA2 LINE L1 -2 6153 6026 1999 267 64 25 chr6 72488963 72489854 -116789700 + L1ME1 LINE L1 2805 3746 -2469 9031 38 0 1 chr6 72489926 72491060 -116788494 - L1PA3 LINE L1 -2602 3544 2412 15049 34 1 3 chr6 72491060 72493652 -116785902 + L1PA3 LINE L1 3548 6155 0 1131 220 162 43 chr6 72493679 72494234 -116785320 + L1ME1 LINE L1 3861 4481 -1734 223 235 20 20 chr6 72494276 72494374 -116785180 + GA-rich Low_complexity Low_complexity 2 99 0 1097 171 66 29 chr6 72494395 72494669 -116784885 + L1ME1 LINE L1 5036 5319 -896 1715 226 27 94 chr6 72494671 72495396 -116784158 + L1ME1 LINE L1 5507 6181 -50 321 274 110 27 chr6 72495299 72495445 -116784109 + L1MA10 LINE L1 6246 6403 0 * 217 171 24 0 chr6 72495902 72495943 -116783611 - L2 LINE L2 0 3313 3272 244 258 65 0 chr6 72496095 72496157 -116783397 - MER5A DNA MER1_type -1 188 123 1346 203 51 18 chr6 72496169 72496445 -116783109 + AluJo SINE Alu 15 299 -13 635 214 32 0 chr6 72496447 72496573 -116782981 - MER5A DNA MER1_type -56 133 4 2467 114 16 0 chr6 72498399 72498768 -116780786 - THE1C LTR MaLR 0 375 1 234 308 103 8 chr6 72498948 72499065 -116780489 + MIR SINE MIR 79 206 -56 267 273 156 8 chr6 72499165 72499293 -116780261 - MIR SINE MIR 0 262 116 277 272 147 29 chr6 72499907 72500043 -116779511 - MIR SINE MIR -97 165 14 256 264 47 47 chr6 72500419 72500612 -116778942 + L1M4 LINE L1 2848 3040 -3106 1696 158 66 18 chr6 72500663 72500998 -116778556 - L1MA7 LINE L1 -62 6229 5879 5169 167 38 29 chr6 72501022 72502320 -116777234 - L1MA4 LINE L1 -13 6287 4965 2149 125 0 0 chr6 72502320 72502617 -116776937 - AluSx SINE Alu -15 297 1 5169 167 38 29 chr6 72502617 72503038 -116776516 - L1MA4 LINE L1 -1335 4965 4549 1539 219 64 32 chr6 72503087 72503580 -116775974 + MLT2A1 LTR ERVL 32 554 0 26541 108 7 7 chr6 72503580 72507297 -116772257 + HERVL-A1 LTR ERVL 1 3718 -1936 29 28 0 0 chr6 72507398 72507434 -116772120 + AT_rich Low_complexity Low_complexity 1 36 0 4648 62 3 0 chr6 72507455 72508039 -116771515 - L1PA6 LINE L1 -13 6141 5556 341 275 0 0 chr6 72508565 72508645 -116770909 + L2 LINE L2 1876 1955 -1359 306 0 0 0 chr6 72509128 72509162 -116770392 + (CA)n Simple_repeat Simple_repeat 2 35 0 2529 158 22 4 chr6 72509165 72509622 -116769932 - L1P5 LINE L1 -384 5772 5308 * 9450 174 38 6 chr6 72509618 72511211 -116768343 + L1M1 LINE L1 153 1796 -5769 398 293 184 24 chr6 72512160 72512372 -116767182 - L3 LINE CR1 -201 1376 1131 498 250 107 6 chr6 72512689 72512857 -116766697 + MIR SINE MIR 1 185 -77 243 0 0 0 chr6 72513086 72513113 -116766441 + (TC)n Simple_repeat Simple_repeat 2 28 0 795 220 52 0 chr6 72514182 72514373 -116765181 - MER3 DNA MER1_type 0 209 9 468 289 96 6 chr6 72514869 72515035 -116764519 + MIR SINE MIR 4 184 -78 26 101 0 0 chr6 72515073 72515162 -116764392 + AT_rich Low_complexity Low_complexity 1 89 0 2018 157 23 3 chr6 72515162 72515513 -116764041 - MER47A DNA MER2_type -1 365 8 26 74 0 0 chr6 72515535 72515589 -116763965 + AT_rich Low_complexity Low_complexity 1 54 0 300 373 28 14 chr6 72515594 72515736 -116763818 + MER5A DNA MER1_type 46 189 0 726 312 82 40 chr6 72515905 72516354 -116763200 - LTR33 LTR ERVL -44 477 10 768 216 27 22 chr6 72516881 72517066 -116762488 + MER5A DNA MER1_type 3 188 -1 608 175 50 8 chr6 72517494 72517614 -116761940 - MER58A DNA MER1_type -15 209 85 410 219 10 0 chr6 72517628 72517724 -116761830 + L1MA9 LINE L1 5461 5557 -755 2050 128 48 31 chr6 72517724 72518082 -116761472 + THE1B LTR MaLR 1 364 0 10877 108 27 1 chr6 72518082 72519623 -116759931 + THE1B-int LTR MaLR 1 1580 0 2081 112 56 34 chr6 72519623 72519979 -116759575 + THE1B LTR MaLR 1 364 0 2726 178 40 88 chr6 72519981 72520738 -116758816 + L1MA9 LINE L1 5555 6274 -38 247 297 62 0 chr6 72520764 72520828 -116758726 - MER58A DNA MER1_type -39 68 1 2577 48 0 3 chr6 72521530 72521842 -116757712 - AluY SINE Alu 0 311 1 230 294 10 88 chr6 72522081 72522183 -116757371 - Charlie8 DNA MER1_type -2117 300 207 21 0 0 0 chr6 72523785 72523806 -116755748 + AT_rich Low_complexity Low_complexity 1 21 0 2408 66 0 3 chr6 72523812 72524113 -116755441 + AluY SINE Alu 1 300 -11 237 353 39 0 chr6 72524890 72524992 -116754562 - L2 LINE L2 -597 2717 2612 226 351 64 20 chr6 72525309 72525511 -116754043 - L2 LINE L2 -1230 2084 1874 28 79 0 0 chr6 72527351 72527414 -116752140 + AT_rich Low_complexity Low_complexity 1 63 0 532 323 88 39 chr6 72527989 72528351 -116751203 - L3 LINE CR1 -204 1373 994 182 314 256 21 chr6 72528471 72528857 -116750697 - L3 LINE CR1 -828 749 273 1021 173 38 0 chr6 72529526 72529711 -116749843 + MSTB1 LTR MaLR 241 432 0 21 0 0 0 chr6 72529846 72529867 -116749687 + AT_rich Low_complexity Low_complexity 1 21 0 1647 128 84 4 chr6 72530258 72530531 -116749023 + MER46B DNA MER2_type 1 170 -66 25 0 0 0 chr6 72531182 72531207 -116748347 + AT_rich Low_complexity Low_complexity 1 25 0 2012 153 21 140 chr6 72533027 72533718 -116745836 + MER4A LTR ERV1 1 465 0 375 299 63 58 chr6 72534885 72535092 -116744462 - MIR SINE MIR -24 238 31 265 249 47 136 chr6 72535598 72535767 -116743787 + MIR SINE MIR 1 154 -108 756 279 56 32 chr6 72536428 72536579 -116742975 + MIR SINE MIR 5 166 -96 2253 100 3 0 chr6 72536579 72536889 -116742665 + AluSp SINE Alu 1 311 -2 756 279 56 32 chr6 72536889 72536988 -116742566 + MIR SINE MIR 166 261 -1 21 0 0 0 chr6 72538986 72539007 -116740547 + AT_rich Low_complexity Low_complexity 1 21 0 766 333 85 55 chr6 72539481 72540058 -116739496 - L2 LINE L2 -557 2757 2164 2290 41 0 101 chr6 72541180 72541525 -116738029 - AluY SINE Alu -1 310 1 1681 85 127 15 chr6 72541614 72541874 -116737680 + AluSc SINE Alu 1 289 -20 25 51 0 0 chr6 72542192 72542231 -116737323 + AT_rich Low_complexity Low_complexity 1 39 0 329 308 158 0 chr6 72542450 72542596 -116736958 + MIR SINE MIR 81 249 -13 263 357 89 27 chr6 72542845 72543069 -116736485 - MIR SINE MIR -24 238 1 2461 148 9 32 chr6 72544103 72544542 -116735012 - Tigger2a DNA MER2_type -1 433 5 563 221 20 40 chr6 72544554 72544703 -116734851 - L2 LINE L2 -4 3309 3164 334 339 28 76 chr6 72544717 72544968 -116734586 - L2 LINE L2 -112 3201 2963 525 270 77 95 chr6 72545019 72545304 -116734250 - L2 LINE L2 -478 2836 2557 1639 189 58 9 chr6 72545347 72545691 -116733863 - L1MB3 LINE L1 -7 6176 5816 660 146 32 0 chr6 72545705 72545828 -116733726 - L1M4c LINE L1 -3885 2499 2373 225 170 38 0 chr6 72545876 72545929 -116733625 + A-rich Low_complexity Low_complexity 5 59 0 878 173 4 113 chr6 72545936 72546167 -116733387 - MER2 DNA MER2_type -138 207 2 5119 135 41 6 chr6 72546167 72547054 -116732500 - L1M4c LINE L1 -4008 2376 1459 1301 203 0 4 chr6 72547053 72547289 -116732265 - L1M4c LINE L1 -6134 250 16 * 863 306 142 6 chr6 72547291 72547778 -116731776 - L2 LINE L2 -769 2545 1993 457 330 34 56 chr6 72547808 72548075 -116731479 + L3 LINE CR1 1296 1556 -21 204 420 0 11 chr6 72548249 72548337 -116731217 + MIR SINE MIR 45 131 -77 237 280 119 25 chr6 72548792 72548910 -116730644 + MIR SINE MIR 134 262 0 282 330 102 30 chr6 72549205 72549469 -116730085 - L1MC/D LINE L1 -2143 5665 5383 23 33 0 0 chr6 72549654 72549684 -116729870 + AT_rich Low_complexity Low_complexity 1 30 0 330 26 0 0 chr6 72549782 72549821 -116729733 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 233 178 68 0 chr6 72550182 72550255 -116729299 - L1MB4 LINE L1 0 6180 6103 512 259 43 0 chr6 72550258 72550374 -116729180 - FLAM_A SINE Alu -12 121 1 2101 184 31 38 chr6 72550374 72550824 -116728730 - L1MB4 LINE L1 -38 6142 5696 237 65 0 0 chr6 72551446 72551477 -116728077 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1220 309 52 6 chr6 72553039 72553524 -116726030 - HsTC2 DNA Tc2 -1391 507 1 317 344 0 0 chr6 72553576 72553666 -116725888 + L1MC4 LINE L1 6614 6703 -1339 * 346 315 0 0 chr6 72553586 72553675 -116725879 - L1MC4 LINE L1 -1339 6703 6615 225 267 0 22 chr6 72553691 72553781 -116725773 + L1MC4 LINE L1 6615 6702 -1340 * 237 172 0 62 chr6 72553762 72553826 -116725728 - L1MC4 LINE L1 -1339 6703 6644 329 146 0 0 chr6 72553831 72553879 -116725675 - MER66B LTR ERV1 -141 345 298 494 298 54 56 chr6 72553983 72554392 -116725162 + L1PA12 LINE L1 7 414 -7167 303 342 26 7 chr6 72555017 72555172 -116724382 + L1PA12 LINE L1 2165 2322 -5259 * 11395 216 43 16 chr6 72555171 72558926 -116720628 + L1PA13 LINE L1 1253 5116 -1681 23 0 0 0 chr6 72558926 72558949 -116720605 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr6 72558970 72558993 -116720561 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr6 72559061 72559093 -116720461 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr6 72559373 72559403 -116720151 + AT_rich Low_complexity Low_complexity 1 30 0 324 261 99 27 chr6 72560063 72560174 -116719380 + MIR3 SINE MIR 84 202 -6 21 57 0 0 chr6 72561641 72561676 -116717878 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 72562123 72562144 -116717410 + AT_rich Low_complexity Low_complexity 1 21 0 371 313 132 43 chr6 72562740 72563146 -116716408 - L2 LINE L2 -273 3040 2589 466 108 0 0 chr6 72564561 72564626 -116714928 - L1PA4 LINE L1 -297 5858 5794 384 71 0 0 chr6 72564619 72564675 -116714879 + L1PA8A LINE L1 5861 5916 -215 * 6123 200 22 8 chr6 72564678 72566216 -116713338 + L1MA10 LINE L1 4069 5626 -542 1303 203 3 68 chr6 72566217 72566538 -116713016 + MLT1A1 LTR MaLR 1 300 -65 972 196 0 92 chr6 72566548 72566777 -116712777 + MLT1A1 LTR MaLR 156 363 -2 1791 201 18 10 chr6 72566790 72567187 -116712367 + L1MA10 LINE L1 5922 6321 -13 183 100 0 0 chr6 72567205 72567235 -116712319 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 204 329 41 0 chr6 72568946 72569019 -116710535 - MIR SINE MIR -78 184 109 287 300 171 29 chr6 72569517 72569657 -116709897 + MIR SINE MIR 27 186 -76 207 270 0 32 chr6 72570482 72570545 -116709009 + MIR SINE MIR 71 131 -77 187 242 32 48 chr6 72570612 72570674 -116708880 + MIR SINE MIR 40 100 -162 409 293 100 20 chr6 72570760 72570910 -116708644 + MIR SINE MIR 100 261 -1 252 330 18 9 chr6 72571683 72571792 -116707762 - MIR SINE MIR -33 229 120 482 264 94 13 chr6 72571893 72572052 -116707502 - L2 LINE L2 0 3313 3142 626 204 34 17 chr6 72572058 72572234 -116707320 - L1MA10 LINE L1 -1 6333 6155 1708 166 47 19 chr6 72572281 72572377 -116707177 - L1MB1 LINE L1 -28 6161 6069 2372 159 26 0 chr6 72572377 72572792 -116706762 - MSTB LTR MaLR 0 426 1 1708 166 47 19 chr6 72572792 72573015 -116706539 - L1MB1 LINE L1 -120 6069 5833 500 361 42 11 chr6 72573017 72573302 -116706252 - L2 LINE L2 -177 3136 2843 1086 248 71 121 chr6 72573310 72573381 -116706173 + MLT1F1 LTR MaLR 144 217 -350 2058 134 0 10 chr6 72573381 72573694 -116705860 + AluSx SINE Alu 1 310 -2 1086 248 71 121 chr6 72573694 72574061 -116705493 + MLT1F1 LTR MaLR 217 560 -7 1539 315 126 8 chr6 72574141 72574902 -116704652 - L2 LINE L2 -662 2652 1802 186 353 96 58 chr6 72575130 72575609 -116703945 + L2 LINE L2 2239 2735 -579 194 186 93 0 chr6 72575645 72575688 -116703866 + L2 LINE L2 3267 3313 0 249 337 74 32 chr6 72576046 72576141 -116703413 + L2 LINE L2 3126 3224 -48 239 200 0 13 chr6 72577670 72577745 -116701809 + (TA)n Simple_repeat Simple_repeat 2 75 0 3774 233 27 33 chr6 72578181 72579026 -116700528 - L1M4 LINE L1 -585 5599 4763 1940 142 3 22 chr6 72579026 72579344 -116700210 - AluSx SINE Alu 0 312 1 3774 233 27 33 chr6 72579344 72579877 -116699677 - L1M4 LINE L1 -1421 4763 4229 21 0 0 0 chr6 72579979 72580000 -116699554 + AT_rich Low_complexity Low_complexity 1 21 0 358 368 26 21 chr6 72580421 72580614 -116698940 + L3 LINE CR1 1360 1553 -24 638 262 7 0 chr6 72580698 72580847 -116698707 - Zaphod DNA AcHobo -1 4030 3881 284 425 81 0 chr6 72580975 72581135 -116698419 - MER115 DNA AcHobo -270 423 251 * 695 350 46 35 chr6 72581130 72581498 -116698056 - MER115 DNA AcHobo -320 373 2 22455 44 6 0 chr6 72582184 72585779 -116693775 + L1PA4 LINE L1 2549 6153 -2 28 48 0 0 chr6 72586296 72586338 -116693216 + AT_rich Low_complexity Low_complexity 1 42 0 233 286 0 16 chr6 72587065 72587128 -116692426 - L2 LINE L2 -54 3259 3198 189 415 46 7 chr6 72587314 72587466 -116692088 - L2 LINE L2 -206 3066 2909 309 240 110 55 chr6 72587469 72587615 -116691939 + L2 LINE L2 3154 3307 -6 * 394 283 139 77 chr6 72587610 72588179 -116691375 - L2 LINE L2 -420 2894 2291 2057 168 56 5 chr6 72588335 72588746 -116690808 + MSTB1 LTR MaLR 1 432 0 1180 180 31 4 chr6 72588930 72589158 -116690396 - MER46A DNA MER2_type 0 236 3 328 280 0 0 chr6 72589179 72589254 -116690300 + LTR40a LTR ERVL 26 100 -419 815 236 44 11 chr6 72589286 72589468 -116690086 + MER8 DNA MER2_type 50 237 -2 1531 279 22 5 chr6 72589470 72589883 -116689671 + LTR40a LTR ERVL 100 519 0 1376 248 64 16 chr6 72592308 72592744 -116686810 - L1MA9 LINE L1 -25 6287 5831 920 177 12 0 chr6 72592755 72592919 -116686635 - FAM SINE Alu -10 175 10 2576 184 6 4 chr6 72592963 72593447 -116686107 - L1MA9 LINE L1 -506 5806 5322 1289 204 7 4 chr6 72593444 72593714 -116685840 + L1MA9 LINE L1 5049 5319 -827 * 1906 187 53 28 chr6 72594071 72594611 -116684943 + MLT2A2 LTR ERVL 1 554 0 2099 105 0 3 chr6 72594836 72595122 -116684432 - AluSx SINE Alu -7 305 21 305 91 0 0 chr6 72596129 72596173 -116683381 - L1PA13 LINE L1 -11 6152 6109 3253 100 7 0 chr6 72596178 72596629 -116682925 + L1PA13 LINE L1 5499 5952 -211 207 69 0 0 chr6 72596833 72596862 -116682692 + (GA)n Simple_repeat Simple_repeat 2 30 0 2060 170 65 46 chr6 72596931 72597389 -116682165 + MLT1C LTR MaLR 1 467 0 2182 70 0 0 chr6 72598147 72598419 -116681135 + AluY SINE Alu 40 311 0 303 252 37 9 chr6 72599000 72599107 -116680447 + L1ME LINE L1 67 176 -5943 508 272 37 19 chr6 72599107 72599269 -116680285 - MLT1J2 LTR MaLR -285 165 1 22 70 0 0 chr6 72600096 72600139 -116679415 + AT_rich Low_complexity Low_complexity 1 43 0 212 184 0 0 chr6 72601207 72601245 -116678309 + T-rich Low_complexity Low_complexity 1 38 0 456 288 83 31 chr6 72603118 72603181 -116676373 + L1ME LINE L1 898 956 -5163 2399 201 43 2 chr6 72603181 72603693 -116675861 + L1PB4 LINE L1 5623 6155 -1 456 288 83 31 chr6 72603693 72604052 -116675502 + L1ME LINE L1 956 1249 -4870 486 286 63 0 chr6 72604110 72604299 -116675255 + L1MC4 LINE L1 7686 7886 -156 299 187 10 38 chr6 72604301 72604518 -116675036 + (TA)n Simple_repeat Simple_repeat 1 210 0 339 271 96 68 chr6 72604530 72605414 -116674140 + L1ME LINE L1 1285 2218 -4092 2310 244 35 17 chr6 72605462 72606094 -116673460 + L1MA9 LINE L1 5613 6255 -57 330 294 72 61 chr6 72606157 72606681 -116672873 + L1ME LINE L1 2455 2984 -3145 291 146 0 0 chr6 72606732 72606787 -116672767 + (GA)n Simple_repeat Simple_repeat 1 55 0 2238 114 23 11 chr6 72606805 72607156 -116672398 - THE1A LTR MaLR 0 355 1 323 102 0 0 chr6 72607158 72607207 -116672347 - THE1A-int LTR MaLR -2 1578 1530 9925 102 7 2 chr6 72607208 72608572 -116670982 - THE1A-int LTR MaLR -210 1370 1 2014 123 42 50 chr6 72608572 72608930 -116670624 - THE1A LTR MaLR 0 355 1 940 238 28 5 chr6 72609517 72609731 -116669823 + MER20 DNA MER1_type 1 219 0 14997 135 8 4 chr6 72610053 72613341 -116666213 - L1PA8 LINE L1 -9 6478 3184 6762 154 3 11 chr6 72613342 72614484 -116665070 - L1PA8 LINE L1 -4742 1133 1 21 0 0 0 chr6 72615450 72615471 -116664083 + AT_rich Low_complexity Low_complexity 1 21 0 1532 156 71 82 chr6 72615721 72616100 -116663454 - THE1C LTR MaLR 0 375 1 451 282 34 8 chr6 72616746 72616863 -116662691 + L2 LINE L2 3191 3310 -3 290 255 92 0 chr6 72617282 72617380 -116662174 - MLT1L LTR MaLR -3 612 506 3661 109 9 4 chr6 72618013 72618565 -116660989 - L1PA13 LINE L1 -6 6157 5603 254 341 111 8 chr6 72618759 72618885 -116660669 + MIR SINE MIR 49 187 -75 196 284 173 37 chr6 72618922 72619003 -116660551 - L2 LINE L2 0 3272 3181 24 0 0 0 chr6 72619452 72619476 -116660078 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr6 72619597 72619618 -116659936 + (T)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr6 72620222 72620245 -116659309 + AT_rich Low_complexity Low_complexity 1 23 0 28 71 0 0 chr6 72620970 72621026 -116658528 + AT_rich Low_complexity Low_complexity 1 56 0 449 265 34 20 chr6 72621152 72621299 -116658255 + MIR SINE MIR 110 258 -4 2067 112 0 45 chr6 72622286 72622599 -116656955 + AluSg SINE Alu 1 299 -11 291 206 10 0 chr6 72622841 72622917 -116656637 - L1MC/D LINE L1 -554 5610 5561 680 293 132 23 chr6 72623052 72623217 -116656337 + L1MC4 LINE L1 7092 7238 -804 315 0 0 0 chr6 72623217 72623252 -116656302 + (CA)n Simple_repeat Simple_repeat 2 36 0 680 293 132 23 chr6 72623252 72623609 -116655945 + L1MC4 LINE L1 7238 7671 -371 522 196 49 49 chr6 72623627 72623790 -116655764 + L1MC4 LINE L1 7736 7898 -144 1911 144 0 0 chr6 72623818 72624127 -116655427 + AluSx SINE Alu 1 309 0 1903 141 3 0 chr6 72624200 72624508 -116655046 - AluSx SINE Alu 0 309 1 807 139 30 18 chr6 72624518 72624684 -116654870 - L1MC3 LINE L1 0 7785 7618 * 1687 211 48 164 chr6 72624661 72625529 -116654025 - L1MC3 LINE L1 -797 6988 6294 432 302 24 0 chr6 72625615 72625741 -116653813 - MER69 DNA AcHobo -2391 135 7 362 323 55 3 chr6 72626099 72626297 -116653257 + MIR SINE MIR 1 262 0 738 228 96 0 chr6 72626881 72627078 -116652476 - MER20 DNA MER1_type 0 219 4 25 0 0 0 chr6 72627149 72627174 -116652380 + AT_rich Low_complexity Low_complexity 1 25 0 243 156 13 26 chr6 72627674 72627751 -116651803 + (TA)n Simple_repeat Simple_repeat 2 77 0 185 270 63 0 chr6 72628340 72628403 -116651151 + L2 LINE L2 3202 3268 -4 327 296 87 78 chr6 72628403 72628747 -116650807 - L1M4 LINE L1 -2144 4002 3656 24 67 0 0 chr6 72630081 72630126 -116649428 + AT_rich Low_complexity Low_complexity 1 45 0 201 39 0 0 chr6 72630623 72630649 -116648905 + (TA)n Simple_repeat Simple_repeat 1 26 0 28 0 0 0 chr6 72631322 72631350 -116648204 + AT_rich Low_complexity Low_complexity 1 28 0 284 111 0 0 chr6 72631740 72631785 -116647769 - MADE1 DNA Mariner 0 80 36 414 46 231 0 chr6 72631825 72631890 -116647664 - MADE1 DNA Mariner 0 80 1 286 372 83 13 chr6 72632054 72632210 -116647344 + MIR SINE MIR 5 171 -91 2065 130 7 0 chr6 72632860 72633160 -116646394 - AluSx SINE Alu 0 312 11 26 30 0 0 chr6 72634373 72634406 -116645148 + AT_rich Low_complexity Low_complexity 1 33 0 290 143 16 0 chr6 72635004 72635067 -116644487 + GA-rich Low_complexity Low_complexity 3 66 0 416 305 88 35 chr6 72635067 72635293 -116644261 + L1MC4 LINE L1 7087 7324 -718 711 282 91 29 chr6 72635347 72635656 -116643898 + L1MC4 LINE L1 7550 7877 -165 276 198 12 70 chr6 72635878 72635964 -116643590 + L1MC4 LINE L1 7961 8041 -1 406 286 25 0 chr6 72635972 72636091 -116643463 - MIR SINE MIR -140 122 1 196 247 178 0 chr6 72638805 72638878 -116640676 - L2 LINE L2 -5 3267 3182 297 343 41 76 chr6 72639005 72639326 -116640228 - L2 LINE L2 -288 3025 2706 217 270 96 9 chr6 72639367 72639482 -116640072 + MIR SINE MIR 134 258 -4 487 278 144 0 chr6 72639859 72640039 -116639515 - MIR SINE MIR -14 248 43 459 0 0 0 chr6 72640118 72640169 -116639385 + (CA)n Simple_repeat Simple_repeat 2 52 0 1940 147 0 10 chr6 72640362 72640662 -116638892 + AluSx SINE Alu 1 297 -15 2184 118 51 25 chr6 72640816 72641171 -116638383 + THE1B LTR MaLR 1 364 0 379 299 104 41 chr6 72641484 72641705 -116637849 - MIR SINE MIR -15 247 13 184 308 128 0 chr6 72641793 72641871 -116637683 + MIR SINE MIR 169 256 -6 605 113 0 0 chr6 72642473 72642553 -116637001 + Tigger4(Zombi) DNA MER2_type 5 84 -2647 1326 159 9 5 chr6 72642554 72642774 -116636780 - Tigger4(Zombi) DNA MER2_type -455 2276 2056 3007 153 28 15 chr6 72642782 72643312 -116636242 + Tigger4(Zombi) DNA MER2_type 2195 2731 0 248 243 0 0 chr6 72643660 72643730 -116635824 - L1ME4a LINE L1 -3 6118 6049 232 262 235 40 chr6 72644555 72644704 -116634850 + MIR SINE MIR 21 198 -64 199 320 51 0 chr6 72647198 72647276 -116632278 + L2 LINE L2 3227 3308 -5 243 125 0 0 chr6 72649920 72649960 -116629594 + (TG)n Simple_repeat Simple_repeat 2 41 0 1016 301 103 22 chr6 72650770 72651176 -116628378 + LTR16C LTR ERVL 53 491 0 327 227 15 0 chr6 72651510 72651576 -116627978 + LTR16C LTR ERVL 425 491 0 2241 245 56 33 chr6 72653510 72654586 -116624968 + L1ME2 LINE L1 4882 6001 -163 2271 174 16 28 chr6 72654586 72654790 -116624764 + MSTB LTR MaLR 2 207 -219 347 0 23 0 chr6 72654790 72654833 -116624721 + (TC)n Simple_repeat Simple_repeat 1 44 0 2271 174 16 28 chr6 72654833 72655058 -116624496 + MSTB LTR MaLR 207 426 0 2241 245 56 33 chr6 72655058 72655220 -116624334 + L1ME2 LINE L1 6001 6158 -6 365 271 55 55 chr6 72655302 72655485 -116624069 - MIR SINE MIR -12 196 11 325 243 7 103 chr6 72655487 72655623 -116623931 + MER112 DNA MER1_type 1 123 -137 218 244 0 13 chr6 72655625 72655703 -116623851 + (TA)n Simple_repeat Simple_repeat 2 78 0 6086 132 90 17 chr6 72655703 72656850 -116622704 + Tigger3b DNA MER2_type 2 1231 0 255 376 18 18 chr6 72657472 72657637 -116621917 - MIR SINE MIR -90 172 8 334 221 13 0 chr6 72657670 72657747 -116621807 - MER116 DNA Mariner -1 79 2 742 352 131 21 chr6 72657761 72658448 -116621106 + L2 LINE L2 1753 2592 -722 1850 112 16 0 chr6 72658448 72658706 -116620848 - AluSg SINE Alu -8 302 41 742 352 131 21 chr6 72658706 72659046 -116620508 + L2 LINE L2 2592 2893 -421 253 385 59 0 chr6 72659146 72659281 -116620273 + L2 LINE L2 2983 3125 -147 315 0 0 0 chr6 72659521 72659556 -116619998 + (CA)n Simple_repeat Simple_repeat 2 36 0 542 285 123 13 chr6 72661344 72661572 -116617982 + MIR SINE MIR 1 253 -9 188 167 0 19 chr6 72661693 72661747 -116617807 + (TA)n Simple_repeat Simple_repeat 1 53 0 2312 60 0 3 chr6 72661847 72662154 -116617400 - AluY SINE Alu 0 306 1 552 286 49 38 chr6 72663139 72663324 -116616230 + L1MDa LINE L1 91 277 -6263 2388 60 0 0 chr6 72663325 72663642 -116615912 + AluY SINE Alu 1 317 0 264 330 88 81 chr6 72663951 72664372 -116615182 - L2 LINE L2 -2 3270 2847 217 288 48 112 chr6 72664405 72664530 -116615024 - L2 LINE L2 -20 3252 3136 276 330 114 36 chr6 72664837 72665170 -116614384 - L2 LINE L2 -1205 2109 1751 2123 134 0 0 chr6 72665852 72666151 -116613403 + AluSg SINE Alu 1 299 -11 206 0 0 65 chr6 72666200 72666231 -116613323 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 267 264 42 0 chr6 72666235 72666307 -116613247 - MIR SINE MIR -81 181 107 410 282 124 13 chr6 72667337 72667491 -116612063 - MIR3 SINE MIR -21 187 20 22 56 0 0 chr6 72669248 72669284 -116610270 + AT_rich Low_complexity Low_complexity 1 36 0 244 327 103 64 chr6 72671963 72672119 -116607435 - MIR SINE MIR -52 210 49 431 373 40 42 chr6 72672208 72672680 -116606874 - L2 LINE L2 -7 3306 2836 261 0 0 0 chr6 72674817 72674846 -116604708 + (TG)n Simple_repeat Simple_repeat 2 30 0 808 212 59 133 chr6 72675942 72676400 -116603154 + L1MC4 LINE L1 7632 7995 0 2002 125 0 0 chr6 72676772 72677080 -116602474 + AluSq SINE Alu 3 310 0 387 0 0 0 chr6 72677479 72677522 -116602032 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 3582 214 51 16 chr6 72677542 72679552 -116600002 + L1MB5 LINE L1 3964 6166 -8 29 0 0 0 chr6 72680080 72680109 -116599445 + AT_rich Low_complexity Low_complexity 1 29 0 294 50 0 0 chr6 72680419 72680459 -116599095 + (CA)n Simple_repeat Simple_repeat 1 40 0 34 0 0 0 chr6 72680754 72680788 -116598766 + AT_rich Low_complexity Low_complexity 1 34 0 847 244 58 11 chr6 72680789 72681063 -116598491 - MLT1F1 LTR MaLR 0 567 232 511 286 30 48 chr6 72681100 72681268 -116598286 - MIR SINE MIR -91 171 7 1500 234 79 29 chr6 72682007 72682411 -116597143 - MLT1D LTR MaLR -2 503 70 1360 254 72 37 chr6 72682411 72682895 -116596659 + MLT1D LTR MaLR 5 505 0 1500 234 79 29 chr6 72682895 72682969 -116596585 - MLT1D LTR MaLR -435 70 1 21 0 0 0 chr6 72683253 72683274 -116596280 + AT_rich Low_complexity Low_complexity 1 21 0 232 279 0 58 chr6 72683408 72683562 -116595992 + A-rich Low_complexity Low_complexity 5 149 0 198 103 0 0 chr6 72684386 72684415 -116595139 + (T)n Simple_repeat Simple_repeat 1 29 0 283 324 68 64 chr6 72684575 72684794 -116594760 - L2 LINE L2 -190 3082 2863 794 292 112 29 chr6 72684830 72685241 -116594313 + MLT1J LTR MaLR 56 500 -11 536 340 34 31 chr6 72685241 72685532 -116594022 - L2 LINE L2 -685 2629 2338 204 67 0 0 chr6 72685810 72685840 -116593714 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 191 385 15 30 chr6 72686773 72686908 -116592646 - L2 LINE L2 -21 3292 3160 25 51 0 0 chr6 72687683 72687722 -116591832 + AT_rich Low_complexity Low_complexity 1 39 0 953 195 48 82 chr6 72687922 72688214 -116591340 - AluJo SINE Alu -19 293 12 585 283 80 21 chr6 72688223 72688598 -116590956 - L1MEc LINE L1 -1960 4255 3859 226 266 104 12 chr6 72688626 72688799 -116590755 - L1MEc LINE L1 -2911 3304 3116 1906 106 0 88 chr6 72688804 72689133 -116590421 - AluSx SINE Alu -12 300 1 477 0 0 0 chr6 72689137 72689190 -116590364 + (TG)n Simple_repeat Simple_repeat 2 54 0 904 118 0 0 chr6 72689193 72689312 -116590242 - AluSq/x SINE Alu -194 119 1 985 290 102 8 chr6 72689319 72689936 -116589618 - L1MEc LINE L1 -3113 3102 2428 322 308 128 0 chr6 72689939 72690111 -116589443 - L1MEc LINE L1 -4658 1738 1545 1682 252 60 50 chr6 72690131 72690813 -116588741 - L1ME1 LINE L1 -5 6230 5542 1087 255 141 36 chr6 72690813 72691068 -116588486 - L1ME1 LINE L1 -3204 3011 2784 332 43 22 0 chr6 72691068 72691114 -116588440 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1087 255 141 36 chr6 72691114 72691470 -116588084 - L1ME1 LINE L1 -3431 2784 2467 2261 34 0 41 chr6 72691470 72691794 -116587760 - AluY SINE Alu 0 312 1 1087 255 141 36 chr6 72691794 72691889 -116587665 - L1ME1 LINE L1 -3748 2467 2383 416 139 19 65 chr6 72691889 72691997 -116587557 - L1MA5 LINE L1 -3 6297 6195 1087 255 141 36 chr6 72691997 72692070 -116587484 - L1ME1 LINE L1 -3832 2383 2177 1095 310 146 16 chr6 72692096 72692658 -116586896 - L1ME1 LINE L1 -5727 669 35 241 228 41 103 chr6 72692696 72692841 -116586713 - LTR33 LTR ERVL -4 517 382 206 0 0 65 chr6 72692842 72692873 -116586681 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 351 266 169 16 chr6 72693050 72693174 -116586380 - LTR33 LTR ERVL -378 143 1 383 336 45 48 chr6 72693192 72693504 -116586050 + L2 LINE L2 2420 2730 -584 636 82 0 0 chr6 72693824 72693909 -116585645 + AluSp/q SINE Alu 192 276 -37 4585 139 8 40 chr6 72693909 72694764 -116584790 + L1PB1 LINE L1 5323 6150 -1 732 240 87 10 chr6 72695042 72695250 -116584304 + MIR SINE MIR 39 262 0 915 306 90 32 chr6 72695278 72695789 -116583765 + L2 LINE L2 1518 3313 0 982 171 6 6 chr6 72696381 72696551 -116583003 + MLT1B LTR MaLR 1 170 -220 42520 44 7 8 chr6 72696553 72702708 -116576846 + L1PA4 LINE L1 4 6152 -3 28 48 0 0 chr6 72702728 72702770 -116576784 + AT_rich Low_complexity Low_complexity 1 42 0 1179 181 0 0 chr6 72702799 72702998 -116576556 + MLT1B LTR MaLR 192 390 0 241 358 221 6 chr6 72703306 72703627 -116575927 + L2 LINE L2 2587 2976 -338 30 0 0 0 chr6 72703740 72703770 -116575784 + AT_rich Low_complexity Low_complexity 1 30 0 32 43 0 0 chr6 72705189 72705235 -116574319 + AT_rich Low_complexity Low_complexity 1 46 0 4812 167 35 11 chr6 72705362 72706258 -116573296 + L1MC1 LINE L1 5398 6314 -19 369 326 54 50 chr6 72707603 72707842 -116571712 + MIR SINE MIR 9 248 -14 253 364 107 16 chr6 72707913 72708155 -116571399 - L2 LINE L2 -787 2527 2264 21 0 0 0 chr6 72710047 72710068 -116569486 + AT_rich Low_complexity Low_complexity 1 21 0 322 339 31 16 chr6 72710075 72710202 -116569352 - L2 LINE L2 -12 3260 3132 292 264 46 11 chr6 72710574 72710661 -116568893 - L2 LINE L2 -4 3309 3220 35 54 0 0 chr6 72710870 72710926 -116568628 + AT_rich Low_complexity Low_complexity 1 56 0 220 312 0 13 chr6 72711853 72711930 -116567624 + CT-rich Low_complexity Low_complexity 2 77 0 1220 207 68 47 chr6 72712278 72712660 -116566894 - MLT1B LTR MaLR 0 390 1 191 125 25 0 chr6 72712864 72712904 -116566650 + CT-rich Low_complexity Low_complexity 2 42 0 284 0 28 0 chr6 72712904 72712940 -116566614 + (CA)n Simple_repeat Simple_repeat 1 37 0 697 244 138 20 chr6 72713898 72714152 -116565402 - MER115 DNA AcHobo -3 690 407 230 204 0 0 chr6 72714312 72714356 -116565198 + L2 LINE L2 3217 3260 -12 203 189 0 0 chr6 72714950 72714987 -116564567 + T-rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr6 72714987 72715009 -116564545 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7510 26 0 2 chr6 72715009 72716167 -116563387 - L1PA4 LINE L1 -18 6137 4981 3806 213 38 20 chr6 72716267 72716970 -116562584 - L1MB8 LINE L1 -11 6167 5439 1672 223 16 11 chr6 72716970 72717333 -116562221 + MLT1A1 LTR MaLR 1 365 0 3806 213 38 20 chr6 72717333 72717766 -116561788 - L1MB8 LINE L1 -739 5439 5015 537 327 48 37 chr6 72717768 72718040 -116561514 + L2 LINE L2 2944 3218 -95 23 0 0 0 chr6 72718476 72718499 -116561055 + AT_rich Low_complexity Low_complexity 1 23 0 403 255 206 34 chr6 72719731 72719935 -116559619 + MIR SINE MIR 24 262 0 1161 153 0 10 chr6 72721642 72721838 -116557716 + MLT2C1 LTR ERVL 8 201 -196 1316 294 60 10 chr6 72721838 72722355 -116557199 + L1P4 LINE L1 12 554 -7027 2202 111 50 29 chr6 72722359 72722702 -116556852 - THE1B LTR MaLR 0 364 15 731 324 65 67 chr6 72722742 72723840 -116555714 + L1P4 LINE L1 1076 2171 -5410 12382 240 44 17 chr6 72724077 72728192 -116551362 + L1P4 LINE L1 2182 6454 -1150 1815 154 0 11 chr6 72728192 72728501 -116551053 - AluSx SINE Alu 0 306 1 12382 240 44 17 chr6 72728501 72729193 -116550361 + L1P4 LINE L1 6454 7126 -478 449 175 100 0 chr6 72729234 72729314 -116550240 + L1PA12 LINE L1 9 96 -7485 7038 219 19 2 chr6 72729354 72730720 -116548834 + L1PA12 LINE L1 54 1442 -6139 2002 148 30 21 chr6 72731143 72731515 -116548039 - THE1C LTR MaLR 0 375 1 2224 66 28 3 chr6 72731843 72732132 -116547422 - AluY SINE Alu -10 301 6 246 32 0 0 chr6 72732193 72732224 -116547330 + (CA)n Simple_repeat Simple_repeat 2 32 0 194 369 69 15 chr6 72733934 72734064 -116545490 + MIR SINE MIR 2 138 -124 702 178 16 0 chr6 72734682 72734811 -116544743 + MER69 DNA AcHobo 19 149 -2377 243 0 0 0 chr6 72734840 72734867 -116544687 + (TA)n Simple_repeat Simple_repeat 1 27 0 11058 157 19 31 chr6 72734905 72736912 -116542642 - Tigger2 DNA MER2_type 0 2718 737 21 0 0 0 chr6 72737210 72737231 -116542323 + AT_rich Low_complexity Low_complexity 1 21 0 2196 66 35 0 chr6 72737283 72737569 -116541985 - AluY SINE Alu -15 296 1 209 238 119 36 chr6 72737630 72737714 -116541840 + MIR SINE MIR 171 261 -1 216 0 0 0 chr6 72738223 72738247 -116541307 + (CA)n Simple_repeat Simple_repeat 1 24 0 2040 117 0 0 chr6 72738683 72738965 -116540589 + AluSx SINE Alu 1 282 -30 21 0 0 0 chr6 72738968 72738989 -116540565 + AT_rich Low_complexity Low_complexity 1 21 0 5333 143 15 1 chr6 72739890 72740747 -116538807 + L1PA12 LINE L1 1856 2724 -4857 5859 23 11 0 chr6 72740747 72741441 -116538113 + L1PA4 LINE L1 5449 6150 -5 2118 125 0 0 chr6 72741858 72742153 -116537401 + AluSx SINE Alu 3 297 -15 1322 204 72 129 chr6 72742256 72742862 -116536692 + MER77 LTR ERV1 55 601 -4 310 248 69 83 chr6 72742882 72743027 -116536527 - MLT1J LTR MaLR -132 379 237 511 326 41 10 chr6 72743434 72743630 -116535924 - MLT1J LTR MaLR -309 202 1 1111 255 130 9 chr6 72743777 72744232 -116535322 + L1ME2 LINE L1 5646 6155 -9 27 0 0 0 chr6 72744232 72744259 -116535295 + AT_rich Low_complexity Low_complexity 1 27 0 226 370 0 0 chr6 72744445 72744518 -116535036 + MER5A DNA MER1_type 117 189 0 23 54 0 0 chr6 72744716 72744753 -116534801 + AT_rich Low_complexity Low_complexity 1 37 0 286 221 126 31 chr6 72745551 72745678 -116533876 + MIR SINE MIR 124 262 0 190 322 0 0 chr6 72747156 72747215 -116532339 + L2 LINE L2 3251 3309 -4 1671 178 11 7 chr6 72748995 72749312 -116530242 - AluJo SINE Alu 0 318 1 37 0 0 0 chr6 72749385 72749422 -116530132 + AT_rich Low_complexity Low_complexity 1 37 0 435 123 0 0 chr6 72750053 72750134 -116529420 + (TC)n Simple_repeat Simple_repeat 2 82 0 189 74 0 0 chr6 72750136 72750163 -116529391 + (CA)n Simple_repeat Simple_repeat 1 27 0 4928 120 46 0 chr6 72750192 72750995 -116528559 + L1PA16 LINE L1 5317 6156 -10 22 0 0 0 chr6 72751051 72751073 -116528481 + AT_rich Low_complexity Low_complexity 1 22 0 230 279 0 51 chr6 72753103 72753182 -116526372 - L2 LINE L2 -910 2404 2330 1311 206 21 11 chr6 72753504 72753785 -116525769 + L1MB3 LINE L1 5366 5649 -534 2580 174 18 21 chr6 72753887 72754400 -116525154 + L1MB3 LINE L1 5673 6183 0 21 0 0 0 chr6 72755207 72755228 -116524326 + AT_rich Low_complexity Low_complexity 1 21 0 245 379 95 0 chr6 72756693 72756809 -116522745 - L2 LINE L2 -12 3260 3134 343 360 49 12 chr6 72756842 72757006 -116522548 + L3 LINE CR1 1407 1576 -1 21 0 0 0 chr6 72757410 72757431 -116522123 + AT_rich Low_complexity Low_complexity 1 21 0 500 310 142 45 chr6 72758113 72758684 -116520870 + L2 LINE L2 1966 2591 -723 1979 122 4 0 chr6 72758972 72759250 -116520304 - AluSg SINE Alu -11 299 21 24 0 0 0 chr6 72759256 72759280 -116520274 + AT_rich Low_complexity Low_complexity 1 24 0 428 371 83 30 chr6 72759942 72760603 -116518951 + L2 LINE L2 2601 3301 -12 633 370 88 42 chr6 72760686 72761595 -116517959 + L3 LINE CR1 199 1149 -428 216 337 111 47 chr6 72761811 72762001 -116517553 - MIR SINE MIR -12 250 49 802 184 0 0 chr6 72762459 72762584 -116516970 + FRAM SINE Alu 1 122 -54 209 331 79 39 chr6 72762638 72762765 -116516789 - MIR SINE MIR -116 146 15 6075 73 39 0 chr6 72763186 72763981 -116515573 + LTR12 LTR ERV1 1 826 0 17266 30 1 3 chr6 72766965 72769671 -116509883 - L1PA3 LINE L1 -147 6008 3308 246 128 0 0 chr6 72770179 72770218 -116509336 + (ATG)n Simple_repeat Simple_repeat 1 39 0 832 296 45 4 chr6 72770225 72770472 -116509082 - MIR SINE MIR -5 257 1 384 317 211 0 chr6 72770560 72770740 -116508814 - MER58A DNA MER1_type -1 223 6 548 254 24 77 chr6 72771188 72771436 -116508118 - L1ME1 LINE L1 0 6959 6725 1153 233 108 24 chr6 72771455 72771911 -116507643 - L1ME1 LINE L1 -413 6548 6055 * 1412 300 82 43 chr6 72771910 72772318 -116507236 - L1ME1 LINE L1 -4600 2522 2131 270 81 0 0 chr6 72772318 72772355 -116507199 + (TG)n Simple_repeat Simple_repeat 1 37 0 1412 300 82 43 chr6 72772355 72773389 -116506165 - L1ME1 LINE L1 -4991 2131 814 650 254 27 43 chr6 72773603 72773859 -116505695 + L1ME2 LINE L1 5905 6156 -8 204 426 68 6 chr6 72776288 72776450 -116503104 + MIR SINE MIR 20 191 -71 381 43 0 0 chr6 72777802 72777849 -116501705 + (CA)n Simple_repeat Simple_repeat 2 48 0 24 53 0 0 chr6 72779018 72779056 -116500498 + AT_rich Low_complexity Low_complexity 1 38 0 6265 143 18 12 chr6 72779082 72780584 -116498970 - L1MA3 LINE L1 0 7724 6213 12413 166 48 29 chr6 72780684 72781315 -116498239 - L1MA3 LINE L1 -2221 5344 4727 2252 83 3 0 chr6 72781315 72781615 -116497939 - AluY SINE Alu -10 301 1 12413 166 48 29 chr6 72781615 72784931 -116494623 - L1MA3 LINE L1 -2838 4727 1323 311 0 0 0 chr6 72784984 72785021 -116494533 - L1P LINE L1 -1805 4341 4305 2284 42 0 3 chr6 72785021 72785303 -116494251 + L1PA4 LINE L1 5869 6152 -3 472 294 111 63 chr6 72785414 72785839 -116493715 - L1MEc LINE L1 -3435 2780 2336 260 296 10 0 chr6 72786300 72786398 -116493156 - L1MEc LINE L1 -4637 1759 1661 298 322 38 33 chr6 72786561 72786744 -116492810 + MLT1H1 LTR MaLR 75 258 -297 270 204 19 0 chr6 72786790 72786844 -116492710 + MLT1H1 LTR MaLR 497 551 -4 1476 242 77 71 chr6 72787017 72787550 -116492004 - MER77 LTR ERV1 -6 599 64 325 237 77 6 chr6 72787914 72788070 -116491484 + MER53 DNA DNA 1 167 -22 444 327 85 24 chr6 72790248 72790459 -116489095 - MIR SINE MIR -30 232 9 280 107 0 36 chr6 72790671 72790727 -116488827 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 1268 172 4 0 chr6 72791230 72791468 -116488086 + L1MA5 LINE L1 6062 6300 0 21 0 0 0 chr6 72791991 72792012 -116487542 + AT_rich Low_complexity Low_complexity 1 21 0 1682 128 210 3 chr6 72792138 72792457 -116487097 + L1PA11 LINE L1 5784 6168 -6 1839 154 3 10 chr6 72792891 72793190 -116486364 + AluSx SINE Alu 5 301 -11 24 53 0 0 chr6 72793231 72793269 -116486285 + AT_rich Low_complexity Low_complexity 1 38 0 2116 116 3 0 chr6 72793577 72793879 -116485675 - AluSx SINE Alu -9 303 1 1661 154 0 45 chr6 72794321 72794607 -116484947 + AluJb SINE Alu 7 279 -33 228 86 0 0 chr6 72794609 72794644 -116484910 + (CAA)n Simple_repeat Simple_repeat 1 35 0 24 0 0 0 chr6 72794765 72794789 -116484765 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr6 72795030 72795052 -116484502 + (A)n Simple_repeat Simple_repeat 1 22 0 253 197 61 0 chr6 72795712 72795778 -116483776 - MLT2B1 LTR ERVL 0 520 451 897 165 34 6 chr6 72795799 72795975 -116483579 - Tigger1 DNA MER2_type 0 2418 2238 4312 192 12 17 chr6 72795993 72796074 -116483480 + L1PA13 LINE L1 2682 2762 -3401 180 0 0 0 chr6 72796074 72796094 -116483460 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 4312 192 12 17 chr6 72796094 72799325 -116480229 + L1PA13 LINE L1 2762 6159 -4 605 289 63 39 chr6 72799575 72799990 -116479564 + HAL1 LINE L1 1260 1684 -823 357 287 61 37 chr6 72800024 72800188 -116479366 + HAL1 LINE L1 2057 2224 -283 4359 52 2 0 chr6 72800209 72800768 -116478786 + L1PA5 LINE L1 3411 3970 -2176 11158 36 7 1 chr6 72800868 72803004 -116476550 + L1PA5 LINE L1 3999 6151 -3 1961 156 10 3 chr6 72803088 72803396 -116476158 - AluSx SINE Alu 0 312 3 22 0 0 0 chr6 72803425 72803447 -116476107 + AT_rich Low_complexity Low_complexity 1 22 0 603 195 49 24 chr6 72803633 72803797 -116475757 + MER96B DNA MER1_type? 12 179 -238 431 318 91 65 chr6 72804122 72804616 -116474938 - MLT1J LTR MaLR 0 511 5 196 312 70 51 chr6 72805443 72805600 -116473954 - MIR SINE MIR -56 206 47 292 272 143 11 chr6 72805734 72806052 -116473502 - L1M4b LINE L1 -5177 1783 1331 333 109 0 0 chr6 72806137 72806192 -116473362 + (TG)n Simple_repeat Simple_repeat 2 56 0 252 0 0 0 chr6 72806585 72806613 -116472941 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 191 88 29 0 chr6 72806612 72806646 -116472908 + (TG)n Simple_repeat Simple_repeat 2 36 0 * 7128 104 17 2 chr6 72807009 72808000 -116471554 + L1PA7 LINE L1 4291 5319 -835 216 0 0 0 chr6 72808000 72808024 -116471530 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7128 104 17 2 chr6 72808024 72808864 -116470690 + L1PA7 LINE L1 5319 6145 -9 377 266 36 83 chr6 72809023 72809281 -116470273 + MER77 LTR ERV1 56 372 -233 565 190 41 16 chr6 72809343 72809464 -116470090 + MER77 LTR ERV1 468 591 -14 358 296 31 57 chr6 72810255 72810414 -116469140 + MER5A DNA MER1_type 30 184 -5 509 82 0 0 chr6 72810752 72810825 -116468729 + L1PA3 LINE L1 6080 6152 -3 30 0 0 0 chr6 72810825 72810855 -116468699 + AT_rich Low_complexity Low_complexity 1 30 0 467 245 61 41 chr6 72812420 72812714 -116466840 - L1M4 LINE L1 -1962 4184 3885 23 33 0 0 chr6 72812786 72812816 -116466738 + AT_rich Low_complexity Low_complexity 1 30 0 560 292 12 12 chr6 72813707 72813875 -116465679 - MLT1H LTR MaLR -5 544 377 1266 224 80 14 chr6 72814047 72814396 -116465158 - MLT1A2 LTR MaLR 0 374 3 330 197 42 0 chr6 72814618 72814689 -116464865 - L1PA16 LINE L1 -9 6157 6084 4071 192 34 4 chr6 72814692 72816149 -116463405 - L1PA16 LINE L1 -170 5996 4495 7452 252 25 30 chr6 72816153 72816329 -116463225 + L1PA15-16 LINE L1 1989 2164 -4685 2204 129 0 0 chr6 72816329 72816639 -116462915 + AluSg SINE Alu 1 310 0 7452 252 25 30 chr6 72816639 72819241 -116460313 + L1PA15-16 LINE L1 2164 4770 -2079 3549 174 19 53 chr6 72819213 72820323 -116459231 - L1P4 LINE L1 -622 5544 4481 * 1015 103 0 26 chr6 72820330 72820486 -116459068 - L1PB1 LINE L1 0 6151 6000 11574 158 44 21 chr6 72820486 72824763 -116454791 - L1PBa LINE L1 -1201 5661 1308 2512 149 106 17 chr6 72824769 72825252 -116454302 - L1PBa LINE L1 -5704 1159 634 967 207 10 0 chr6 72825252 72825450 -116454104 - L1PBa LINE L1 -6663 200 1 11721 237 21 16 chr6 72825460 72829674 -116449880 - L1PA13 LINE L1 -1653 5144 752 29 47 0 0 chr6 72829922 72829965 -116449589 + AT_rich Low_complexity Low_complexity 1 43 0 536 303 150 22 chr6 72830886 72831200 -116448354 + L2 LINE L2 2935 3288 -25 217 0 61 0 chr6 72832600 72832633 -116446921 + (TA)n Simple_repeat Simple_repeat 2 36 0 27 49 0 0 chr6 72833520 72833561 -116445993 + AT_rich Low_complexity Low_complexity 1 41 0 1475 48 0 5 chr6 72834088 72834276 -116445278 - L1PA4 LINE L1 0 6155 5969 21 0 0 0 chr6 72834677 72834698 -116444856 + AT_rich Low_complexity Low_complexity 1 21 0 1131 171 187 73 chr6 72835020 72835335 -116444219 - MER31B LTR ERV1 -5 461 111 2186 160 60 22 chr6 72835343 72835844 -116443710 - L1MA3 LINE L1 0 6305 5786 210 78 0 78 chr6 72835851 72835902 -116443652 + (TTATA)n Simple_repeat Simple_repeat 1 47 0 279 159 0 0 chr6 72835905 72835949 -116443605 + L1M2 LINE L1 5725 5768 -523 324 0 0 0 chr6 72835966 72836002 -116443552 + (CA)n Simple_repeat Simple_repeat 2 37 0 792 214 37 17 chr6 72836025 72836248 -116443306 - L1P5 LINE L1 -384 5770 5552 2989 180 22 7 chr6 72836267 72836862 -116442692 - L1MC1 LINE L1 0 6333 5730 3613 237 101 28 chr6 72836864 72837429 -116442125 - L1MDa LINE L1 -2402 4138 3616 1596 238 6 3 chr6 72837429 72837791 -116441763 - MLT1A1 LTR MaLR -2 363 1 3613 237 101 28 chr6 72837791 72838684 -116440870 - L1MDa LINE L1 -2924 3616 2570 2831 130 8 17 chr6 72838693 72839161 -116440393 - L1PA15 LINE L1 0 6165 5702 550 200 43 0 chr6 72839162 72839277 -116440277 - MER31B LTR ERV1 -346 120 1 195 295 33 78 chr6 72839897 72840051 -116439503 + MIR SINE MIR 74 220 -42 413 316 102 62 chr6 72840189 72840705 -116438849 + L2 LINE L2 2774 3305 -8 6335 77 9 5 chr6 72840757 72841619 -116437935 - L1PA8 LINE L1 -7 6165 5300 225 0 0 0 chr6 72842119 72842144 -116437410 + (A)n Simple_repeat Simple_repeat 1 25 0 1963 121 16 7 chr6 72842304 72842610 -116436944 - AluSg SINE Alu -1 309 1 23 54 0 0 chr6 72842783 72842820 -116436734 + AT_rich Low_complexity Low_complexity 1 37 0 246 255 23 47 chr6 72843298 72843453 -116436101 + L1ME LINE L1 5691 5849 -272 2213 86 0 32 chr6 72843533 72843847 -116435707 - AluSc SINE Alu -5 304 1 24 53 0 0 chr6 72843853 72843891 -116435663 + AT_rich Low_complexity Low_complexity 1 38 0 24 85 0 0 chr6 72845429 72845488 -116434066 + AT_rich Low_complexity Low_complexity 1 59 0 214 238 29 29 chr6 72845646 72845751 -116433803 + T-rich Low_complexity Low_complexity 2 106 0 353 354 10 0 chr6 72846361 72846457 -116433097 + L2 LINE L2 3134 3230 -42 253 353 40 70 chr6 72846590 72846791 -116432763 - MLT1K LTR MaLR -391 197 3 420 308 69 0 chr6 72847028 72847158 -116432396 + L2 LINE L2 3134 3272 0 233 298 0 0 chr6 72848611 72848668 -116430886 + L2 LINE L2 3256 3312 -1 987 174 87 15 chr6 72849538 72849734 -116429820 + MER2 DNA MER2_type 1 210 -135 33 0 0 0 chr6 72849746 72849779 -116429775 + AT_rich Low_complexity Low_complexity 1 33 0 1789 129 30 17 chr6 72850827 72851129 -116428425 - L1MA3 LINE L1 -20 6285 5980 570 201 11 23 chr6 72851139 72851313 -116428241 + GA-rich Low_complexity Low_complexity 1 172 0 30 45 0 0 chr6 72851738 72851782 -116427772 + AT_rich Low_complexity Low_complexity 1 44 0 2785 87 0 6 chr6 72852526 72852892 -116426662 + THE1B LTR MaLR 1 364 0 1096 210 183 31 chr6 72853311 72853759 -116425795 - MER69 DNA AcHobo -1 2525 2010 944 308 163 4 chr6 72853764 72854244 -116425310 - MER69 DNA AcHobo -1969 557 2 654 269 15 20 chr6 72856725 72856926 -116422628 + L1MB7 LINE L1 12 211 -6648 1032 328 47 30 chr6 72856949 72857416 -116422138 + L1MB7 LINE L1 482 956 -5903 1775 265 68 41 chr6 72857932 72858357 -116421197 + L1MB7 LINE L1 1205 1617 -5342 1940 135 3 7 chr6 72858357 72858646 -116420908 + AluSx SINE Alu 1 288 -24 1775 265 68 41 chr6 72858646 72859272 -116420282 + L1MB7 LINE L1 1617 2278 -4681 * 5172 217 74 21 chr6 72859264 72861371 -116418183 + L1MB7 LINE L1 4467 6691 -304 489 211 41 41 chr6 72861421 72861568 -116417986 + MER97a DNA MER1_type? 2 148 -746 361 189 0 67 chr6 72861736 72861789 -116417765 + MER67D LTR ERV1 1 47 -467 213 39 0 0 chr6 72861789 72861815 -116417739 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 361 189 0 67 chr6 72861815 72861851 -116417703 + MER67D LTR ERV1 47 84 -430 1538 204 60 0 chr6 72861899 72862217 -116417337 + MER67C LTR ERV1 67 403 -307 224 288 30 0 chr6 72862969 72863035 -116416519 + L3 LINE CR1 1355 1422 -155 1011 182 11 0 chr6 72863062 72863238 -116416316 + MER6B DNA MER2_type 32 209 -1 209 294 29 0 chr6 72863260 72863328 -116416226 + MIR SINE MIR 63 132 -130 23 33 0 0 chr6 72867672 72867702 -116411852 + AT_rich Low_complexity Low_complexity 1 30 0 252 239 97 30 chr6 72868070 72868204 -116411350 + L1MC/D LINE L1 5664 5806 -2002 1154 294 50 63 chr6 72869581 72870159 -116409395 - L1ME LINE L1 -4968 1112 528 2228 99 3 0 chr6 72870159 72870462 -116409092 - AluSg SINE Alu -4 306 3 1154 294 50 63 chr6 72870462 72870926 -116408628 - L1ME LINE L1 -5552 528 88 207 88 0 0 chr6 72870926 72870960 -116408594 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1154 294 50 63 chr6 72870960 72871019 -116408535 - L1ME LINE L1 -5992 88 30 201 197 184 26 chr6 72871277 72871353 -116408201 - MIR SINE MIR -89 173 86 294 29 0 0 chr6 72872150 72872185 -116407369 + (CA)n Simple_repeat Simple_repeat 2 36 0 1660 172 17 21 chr6 72873729 72874020 -116405534 + AluJb SINE Alu 1 290 -22 1714 204 0 0 chr6 72874990 72875289 -116404265 + AluJb SINE Alu 2 300 -12 15863 136 18 99 chr6 72875501 72879282 -116400272 + L1P LINE L1 12 3484 -2662 288 278 43 17 chr6 72879385 72879445 -116400109 - MER58A DNA MER1_type -220 121 64 318 50 0 0 chr6 72879445 72879485 -116400069 + (CAA)n Simple_repeat Simple_repeat 3 42 0 288 278 43 17 chr6 72879485 72879539 -116400015 - MER58A DNA MER1_type -277 64 4 2067 60 0 0 chr6 72879651 72879900 -116399654 + AluY SINE Alu 1 249 -62 842 291 71 45 chr6 72881065 72881621 -116397933 + L2 LINE L2 2752 3310 -3 26 50 0 0 chr6 72884080 72884120 -116395434 + AT_rich Low_complexity Low_complexity 1 40 0 5319 30 0 0 chr6 72884864 72885511 -116394043 + L1PA3 LINE L1 5516 6162 0 695 255 160 29 chr6 72886227 72886842 -116392712 + LTR50 LTR ERVL 3 791 -4 242 337 42 11 chr6 72887238 72887333 -116392221 - MIR3 SINE MIR -51 157 60 599 244 3 0 chr6 72887533 72887679 -116391875 + MSTC LTR MaLR 1 149 -216 183 267 35 70 chr6 72888661 72888747 -116390807 - MIR SINE MIR -73 189 107 204 67 0 0 chr6 72889147 72889177 -116390377 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 2161 113 3 3 chr6 72889177 72889478 -116390076 - AluSg SINE Alu -9 301 1 30 97 0 0 chr6 72889561 72889654 -116389900 + AT_rich Low_complexity Low_complexity 1 93 0 21 0 0 0 chr6 72890066 72890087 -116389467 + AT_rich Low_complexity Low_complexity 1 21 0 24 77 0 0 chr6 72890578 72890630 -116388924 + AT_rich Low_complexity Low_complexity 1 52 0 192 208 83 0 chr6 72891526 72891574 -116387980 + L2 LINE L2 3262 3313 0 239 88 0 0 chr6 72892923 72892957 -116386597 - Tigger6 DNA MER2_type -101 1496 1463 1696 164 0 48 chr6 72893190 72893500 -116386054 + AluJo SINE Alu 1 295 -17 5319 83 6 19 chr6 72893759 72894564 -116384990 + HERVH LTR ERV1 1069 1863 -5850 * 23243 59 2 2 chr6 72894551 72897673 -116381881 + HERVH LTR ERV1 4593 7713 0 2619 78 131 0 chr6 72897673 72898069 -116381485 + LTR7 LTR ERV1 1 448 -2 578 228 50 40 chr6 72898100 72898302 -116381252 + MER3 DNA MER1_type 1 204 -5 337 314 21 26 chr6 72898511 72898705 -116380849 + ERVL LTR ERVL 2368 2560 -2925 1018 183 102 104 chr6 72898713 72899211 -116380343 - L1 LINE L1 -1703 4443 3947 3071 184 25 57 chr6 72899254 72900360 -116379194 + L1MB1 LINE L1 4538 5678 -490 2087 90 4 4 chr6 72900360 72900638 -116378916 + AluSc SINE Alu 2 279 -30 243 0 0 0 chr6 72900643 72900670 -116378884 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3071 184 25 57 chr6 72900670 72900891 -116378663 + L1MB1 LINE L1 5682 5829 -339 993 276 7 1 chr6 72900935 72901280 -116378274 + L1M4 LINE L1 2270 2615 -3531 1149 216 7 16 chr6 72901285 72901595 -116377959 - L1M4 LINE L1 -1961 4185 3879 4920 114 17 0 chr6 72901596 72902312 -116377242 + THE1A-int LTR MaLR 853 1580 0 2359 118 6 11 chr6 72902313 72902669 -116376885 + THE1A LTR MaLR 2 355 0 583 351 47 34 chr6 72902709 72903204 -116376350 + ERVL LTR ERVL 4038 4538 -1226 4188 186 35 9 chr6 72904874 72905785 -116373769 - L1MA7 LINE L1 -11 6280 5346 732 326 148 22 chr6 72906010 72906639 -116372915 - L2 LINE L2 -1450 1864 1157 1027 194 45 9 chr6 72906658 72906911 -116372643 + MSTB1 LTR MaLR 1 262 -164 254 312 13 0 chr6 72906911 72906988 -116372566 + CT-rich Low_complexity Low_complexity 2 79 0 345 228 0 0 chr6 72907043 72907122 -116372432 - L1P4 LINE L1 -531 5634 5556 488 213 9 0 chr6 72907122 72907226 -116372328 + L1PA16 LINE L1 6054 6162 -4 883 211 47 13 chr6 72907226 72907458 -116372096 + MSTB1 LTR MaLR 193 432 0 2051 188 5 7 chr6 72908540 72908971 -116370583 - L1MB3 LINE L1 0 6183 5754 533 365 50 29 chr6 72909250 72909634 -116369920 + L2 LINE L2 2921 3312 -1 25 0 0 0 chr6 72912036 72912061 -116367493 + AT_rich Low_complexity Low_complexity 1 25 0 1815 171 46 14 chr6 72912550 72912900 -116366654 - MER21B LTR ERV1 -369 494 134 14023 193 40 32 chr6 72912917 72912944 -116366610 - MER50-int LTR ERV1 -591 3600 3575 1650 214 7 0 chr6 72912944 72913252 -116366302 + AluJb SINE Alu 1 310 -2 14023 193 40 32 chr6 72913252 72916298 -116363256 - MER50-int LTR ERV1 -616 3575 502 3849 200 39 1 chr6 72916302 72917118 -116362436 - MSTA-int LTR MaLR -804 847 1 1841 155 144 13 chr6 72917122 72917497 -116362057 - MSTA LTR MaLR -4 424 1 476 247 87 27 chr6 72917660 72917810 -116361744 - MER50-int LTR ERV1 -5413 1792 1634 269 177 48 16 chr6 72917896 72917958 -116361596 - MER50-int LTR ERV1 -5587 1618 1555 3822 282 25 41 chr6 72918162 72919515 -116360039 - MER50-int LTR ERV1 -5755 1450 119 1755 153 137 3 chr6 72919515 72919836 -116359718 + THE1B LTR MaLR 1 364 0 11402 109 4 0 chr6 72919836 72921410 -116358144 + THE1B-int LTR MaLR 1 1580 0 1622 145 96 19 chr6 72921410 72921734 -116357820 + THE1B LTR MaLR 1 349 -15 1721 233 122 30 chr6 72921882 72922449 -116357105 - MER50 LTR ERV1 -115 619 1 516 341 98 19 chr6 72922939 72923306 -116356248 + L2 LINE L2 1904 2299 -1015 4077 145 61 46 chr6 72923307 72924161 -116355393 + MER4D LTR ERV1 4 870 -33 20458 38 1 0 chr6 72924261 72927847 -116351707 - L1P1 LINE L1 -700 5455 1868 2892 82 0 0 chr6 72927846 72928223 -116351331 - L1P1 LINE L1 -5763 383 7 * 5727 100 31 36 chr6 72928284 72929219 -116350335 - L1PA13 LINE L1 0 6163 5235 12033 102 0 13 chr6 72929354 72931957 -116347597 + L1PA7 LINE L1 3553 6151 -3 1511 177 7 11 chr6 72932070 72932352 -116347202 - L1MA6 LINE L1 -22 6278 5998 23 33 0 0 chr6 72934093 72934123 -116345431 + AT_rich Low_complexity Low_complexity 1 30 0 720 250 0 0 chr6 72935144 72935296 -116344258 - MLT1D LTR MaLR 0 505 354 1248 195 29 4 chr6 72935399 72935640 -116343914 + MLT1A1 LTR MaLR 119 365 0 21 36 0 0 chr6 72935696 72935724 -116343830 + AT_rich Low_complexity Low_complexity 1 28 0 340 314 92 20 chr6 72936727 72936880 -116342674 - MLT1L LTR MaLR -237 378 215 21 36 0 0 chr6 72937006 72937034 -116342520 + AT_rich Low_complexity Low_complexity 1 28 0 263 265 73 29 chr6 72937324 72937460 -116342094 + L1ME1 LINE L1 5524 5665 -456 466 294 11 28 chr6 72937603 72937783 -116341771 + L1ME1 LINE L1 5938 6114 -52 2854 3 0 0 chr6 72937785 72938096 -116341458 + AluYb8 SINE Alu 1 311 -7 217 191 0 32 chr6 72938106 72938169 -116341385 + GA-rich Low_complexity Low_complexity 2 62 0 815 336 73 13 chr6 72939619 72940071 -116339483 - REP3 LTR ERV -83 479 1 485 309 104 31 chr6 72942808 72943193 -116336361 + L1MC/D LINE L1 5256 5668 -2140 491 281 208 10 chr6 72943287 72943407 -116336147 - L2 LINE L2 -5 3308 3213 192 97 0 0 chr6 72943407 72943438 -116336116 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 491 281 208 10 chr6 72943438 72943605 -116335949 - L2 LINE L2 -100 3213 2964 221 333 9 0 chr6 72943735 72943840 -116335714 + (TATG)n Simple_repeat Simple_repeat 4 109 0 26 50 0 0 chr6 72944018 72944058 -116335496 + AT_rich Low_complexity Low_complexity 1 40 0 32 43 0 0 chr6 72944444 72944490 -116335064 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr6 72944612 72944637 -116334917 + AT_rich Low_complexity Low_complexity 1 25 0 191 289 0 0 chr6 72946434 72946472 -116333082 - MIR SINE MIR -108 100 63 2170 98 0 3 chr6 72946624 72946921 -116332633 - L1PA11 LINE L1 -20 6154 5859 23 0 0 0 chr6 72947424 72947447 -116332107 + AT_rich Low_complexity Low_complexity 1 23 0 206 333 0 0 chr6 72947980 72948031 -116331523 - MIR SINE MIR -97 111 61 28 48 0 0 chr6 72948066 72948108 -116331446 + AT_rich Low_complexity Low_complexity 1 42 0 374 293 21 57 chr6 72949259 72949399 -116330155 + MIR3 SINE MIR 34 168 -40 438 327 13 6 chr6 72949748 72949907 -116329647 + MER5B DNA MER1_type 18 177 -1 2117 123 0 3 chr6 72951600 72951901 -116327653 + AluSq SINE Alu 1 300 -13 462 331 58 18 chr6 72951912 72952190 -116327364 + L2 LINE L2 2246 2534 -780 797 177 0 0 chr6 72952392 72952516 -116327038 + FLAM_C SINE Alu 1 124 -9 437 357 45 24 chr6 72952651 72953032 -116326522 + L1MC4a LINE L1 3289 3677 -2469 310 277 102 25 chr6 72953035 72953270 -116326284 + L1MC4a LINE L1 3706 3958 -2188 653 292 42 75 chr6 72953745 72954001 -116325553 + L1MC4a LINE L1 4178 4441 -1705 2258 119 0 0 chr6 72954001 72954312 -116325242 + AluSq SINE Alu 1 311 -2 653 292 42 75 chr6 72954312 72954958 -116324596 + L1MC4a LINE L1 4441 5050 -1096 360 259 90 38 chr6 72955007 72955219 -116324335 + L1MC4a LINE L1 5871 6093 -1715 1957 263 78 5 chr6 72955290 72955969 -116323585 + L1MC4a LINE L1 6615 7263 -545 941 250 106 77 chr6 72956001 72956628 -116322926 + LTR41 LTR ERVL 76 767 -6 770 218 65 35 chr6 72956632 72956861 -116322693 + L1MC4a LINE L1 7270 7505 -303 245 305 21 21 chr6 72956932 72957027 -116322527 + L2 LINE L2 2796 2890 -424 370 297 63 0 chr6 72957142 72957253 -116322301 + L2 LINE L2 3186 3303 -10 289 264 0 35 chr6 72957619 72957706 -116321848 - MLT1J2 LTR MaLR -13 437 354 536 250 40 67 chr6 72957761 72957985 -116321569 - MLT1J1 LTR MaLR -225 221 4 393 320 23 8 chr6 72958594 72958722 -116320832 + MIR SINE MIR 14 143 -119 957 293 33 21 chr6 72958931 72959265 -116320289 + MLT1J1 LTR MaLR 1 338 -108 593 331 24 43 chr6 72959874 72960128 -116319426 - MLT1H1 LTR MaLR -290 265 17 2126 158 5 11 chr6 72960153 72960520 -116319034 + MLT1A1 LTR MaLR 1 365 0 2052 87 0 40 chr6 72960798 72961098 -116318456 - AluSp SINE Alu -25 288 1 190 195 0 0 chr6 72961655 72961696 -116317858 + L2 LINE L2 3273 3313 0 1753 160 3 10 chr6 72962565 72962871 -116316683 - AluSx SINE Alu -8 304 1 2102 92 7 0 chr6 72963052 72963336 -116316218 + AluY SINE Alu 25 310 -1 1792 161 10 3 chr6 72963468 72963778 -116315776 + MER44D DNA MER2_type 1 582 -27 2518 198 57 27 chr6 72964788 72965418 -116314136 - Tigger6 DNA MER2_type -1 1596 948 255 31 0 0 chr6 72965554 72965586 -116313968 + (A)n Simple_repeat Simple_repeat 1 32 0 268 328 41 8 chr6 72965586 72965708 -116313846 - Tigger3(Golem) DNA MER2_type -1463 1566 1441 261 276 29 19 chr6 72965684 72965789 -116313765 - Tigger7 DNA MER2_type -1156 1331 1226 * 1380 237 28 16 chr6 72965819 72965917 -116313637 - Tigger6 DNA MER2_type -761 322 227 6654 140 46 12 chr6 72965917 72967106 -116312448 - Tigger3b DNA MER2_type -1 1230 1 1380 237 28 16 chr6 72967106 72967324 -116312230 - Tigger6 DNA MER2_type -856 227 2 7578 29 0 0 chr6 72968300 72969336 -116310218 - L1PA3 LINE L1 -8 6147 5112 1635 26 0 0 chr6 72969336 72969530 -116310024 + L1PA3 LINE L1 4910 5103 -1043 1937 154 51 26 chr6 72970677 72971027 -116308527 + THE1B LTR MaLR 1 359 -5 257 191 95 0 chr6 72971094 72971157 -116308397 + GA-rich Low_complexity Low_complexity 3 71 0 313 289 155 21 chr6 72972698 72972892 -116306662 + L1ME LINE L1 5350 5569 -595 21 36 0 0 chr6 72973249 72973277 -116306277 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr6 72975067 72975089 -116304465 + (CA)n Simple_repeat Simple_repeat 2 23 0 372 232 0 0 chr6 72975092 72975191 -116304363 + (TATATG)n Simple_repeat Simple_repeat 2 100 0 274 194 32 0 chr6 72975351 72975413 -116304141 - MER117 DNA MER1_type -89 108 45 23 0 0 0 chr6 72976303 72976326 -116303228 + AT_rich Low_complexity Low_complexity 1 23 0 2915 60 3 0 chr6 72976326 72976694 -116302860 - L1PA5 LINE L1 -8 6146 5778 2788 93 29 31 chr6 72976817 72977266 -116302288 + LTR7 LTR ERV1 1 448 -2 6133 111 74 7 chr6 72977268 72978342 -116301212 + HERVH LTR ERV1 1 1145 -6568 1427 112 14 23 chr6 72978459 72978673 -116300881 - THE1B LTR MaLR -152 212 1 3893 83 14 2 chr6 72978845 72979401 -116300153 + L1PA13 LINE L1 5601 6163 0 31 0 0 0 chr6 72979419 72979450 -116300104 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr6 72981408 72981437 -116298117 + AT_rich Low_complexity Low_complexity 1 29 0 26 52 0 17 chr6 72982498 72982526 -116297028 + AT_rich Low_complexity Low_complexity 1 28 -29 1935 145 3 0 chr6 72982526 72982830 -116296724 - AluSx SINE Alu -7 305 1 26 52 0 17 chr6 72982830 72982859 -116296695 + AT_rich Low_complexity Low_complexity 28 57 0 22 56 0 0 chr6 72983007 72983043 -116296511 + AT_rich Low_complexity Low_complexity 1 36 0 7600 24 0 0 chr6 72983169 72984746 -116294808 - L1PA2 LINE L1 -2 6153 4579 960 311 110 10 chr6 72985006 72985424 -116294130 + LTR16B LTR ERVL 1 460 -4 831 257 86 58 chr6 72985936 72986364 -116293190 + L1ME3A LINE L1 5731 6170 0 229 314 192 20 chr6 72986536 72986819 -116292735 + L2 LINE L2 2741 3077 -195 433 236 11 40 chr6 72986993 72987149 -116292405 - L1MD3 LINE L1 -38 7929 6194 2239 66 3 66 chr6 72989630 72989950 -116289604 + AluY SINE Alu 1 300 -11 282 73 0 0 chr6 72989975 72990016 -116289538 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 284 339 76 17 chr6 72990917 72991035 -116288519 + MIR SINE MIR 17 141 -121 449 376 30 39 chr6 72991398 72991762 -116287792 - L2 LINE L2 -920 2394 2034 363 187 252 9 chr6 72991886 72991993 -116287561 - MLT2C1 LTR ERVL -149 248 116 5560 236 42 4 chr6 72991998 72993210 -116286344 + L1M2 LINE L1 1 1258 -5591 21 0 0 0 chr6 72993406 72993427 -116286127 + AT_rich Low_complexity Low_complexity 1 21 0 1763 116 89 0 chr6 72995336 72995618 -116283936 + AluSx SINE Alu 3 307 0 200 285 160 83 chr6 72995619 72995763 -116283791 + MIR3 SINE MIR 45 199 -9 479 272 51 59 chr6 72996027 72996281 -116283273 + L1ME LINE L1 5454 5705 -459 180 0 0 0 chr6 72996282 72996302 -116283252 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1344 196 0 29 chr6 72996309 72996589 -116282965 - AluJb SINE Alu 0 312 41 24 0 0 0 chr6 72996602 72996626 -116282928 + AT_rich Low_complexity Low_complexity 1 24 0 392 168 70 13 chr6 72996652 72996740 -116282814 + (TA)n Simple_repeat Simple_repeat 1 83 -812 1876 167 0 3 chr6 72996740 72997034 -116282520 + AluSx SINE Alu 1 293 -19 392 168 70 13 chr6 72997034 72997499 -116282055 + (TA)n Simple_repeat Simple_repeat 83 895 0 34 0 0 0 chr6 72997504 72997538 -116282016 + AT_rich Low_complexity Low_complexity 1 34 0 39 22 0 0 chr6 72997991 72998037 -116281517 + AT_rich Low_complexity Low_complexity 1 46 0 3833 31 4 0 chr6 72998524 72998981 -116280573 + L1PA4 LINE L1 5697 6155 0 364 347 25 5 chr6 73000447 73000643 -116278911 + L1MEc LINE L1 70 269 -6127 728 296 59 33 chr6 73000666 73001532 -116278022 + L1MEc LINE L1 705 1450 -4767 1863 67 0 16 chr6 73001542 73001796 -116277758 - L1PA4 LINE L1 -3 6152 5903 7418 49 0 3 chr6 73001798 73002735 -116276819 - L1P LINE L1 -1470 4676 3743 4363 42 0 0 chr6 73002734 73003276 -116276278 + L1P LINE L1 3202 3743 -2403 * 218 136 23 0 chr6 73003370 73003414 -116276140 + (TA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr6 73003449 73003470 -116276084 + AT_rich Low_complexity Low_complexity 1 21 0 305 208 164 38 chr6 73003470 73003629 -116275925 + L1MEc LINE L1 1624 1802 -4594 189 0 0 0 chr6 73004185 73004206 -116275348 + (TG)n Simple_repeat Simple_repeat 2 22 0 850 332 97 14 chr6 73004321 73004861 -116274693 + L2 LINE L2 2488 3081 -232 31 68 0 0 chr6 73005026 73005085 -116274469 + AT_rich Low_complexity Low_complexity 1 59 0 268 157 60 96 chr6 73006059 73006142 -116273412 + MIR SINE MIR 69 148 -114 273 109 0 0 chr6 73006178 73006224 -116273330 + (TA)n Simple_repeat Simple_repeat 1 46 0 205 149 43 0 chr6 73006464 73006511 -116273043 + T-rich Low_complexity Low_complexity 2 50 0 2032 251 99 37 chr6 73006655 73007392 -116272162 + L1ME1 LINE L1 5379 6161 -5 30 69 0 0 chr6 73007454 73007512 -116272042 + AT_rich Low_complexity Low_complexity 1 58 0 1907 91 65 23 chr6 73007680 73007987 -116271567 + L1PA10 LINE L1 5846 6165 -3 1353 331 66 20 chr6 73008131 73008813 -116270741 - L3 LINE CR1 -193 1384 672 239 336 27 18 chr6 73008994 73009104 -116270450 + MLT1K LTR MaLR 152 262 -326 938 235 104 0 chr6 73009705 73009973 -116269581 - MER63B DNA MER1_type -137 299 4 602 270 14 2 chr6 73010029 73010202 -116269352 - MIR SINE MIR -57 205 30 1122 168 164 48 chr6 73010480 73010748 -116268806 - AluJo SINE Alu -6 306 8 25 65 0 0 chr6 73010822 73010868 -116268686 + AT_rich Low_complexity Low_complexity 1 46 0 2019 144 3 7 chr6 73010963 73011269 -116268285 + AluSx SINE Alu 5 309 -3 202 213 85 0 chr6 73011888 73011935 -116267619 + L2 LINE L2 3251 3301 -12 22 0 0 0 chr6 73011998 73012020 -116267534 + AT_rich Low_complexity Low_complexity 1 22 0 199 205 51 0 chr6 73012195 73012234 -116267320 - MIR SINE MIR -55 153 113 522 269 181 0 chr6 73012250 73012421 -116267133 - MIR SINE MIR -49 213 12 257 317 48 10 chr6 73013036 73013140 -116266414 - MIR SINE MIR -96 166 59 331 179 145 17 chr6 73014107 73014224 -116265330 - L1ME4a LINE L1 -12 6109 5978 23 54 0 0 chr6 73014224 73014261 -116265293 + AT_rich Low_complexity Low_complexity 1 37 0 227 73 73 0 chr6 73015413 73015468 -116264086 + (TA)n Simple_repeat Simple_repeat 1 59 0 364 246 33 1 chr6 73015468 73015611 -116263943 + L1 LINE L1 2208 2353 -3793 206 27 123 14 chr6 73015613 73015686 -116263868 + (TA)n Simple_repeat Simple_repeat 1 81 0 28 29 0 0 chr6 73016674 73016709 -116262845 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr6 73016870 73016893 -116262661 + AT_rich Low_complexity Low_complexity 1 23 0 8449 245 42 22 chr6 73016899 73019019 -116260535 + L1MB2 LINE L1 2113 4295 -1851 381 43 0 0 chr6 73019019 73019066 -116260488 + (CA)n Simple_repeat Simple_repeat 2 48 0 8449 245 42 22 chr6 73019066 73019575 -116259979 + L1MB2 LINE L1 4295 4793 -1353 657 248 13 13 chr6 73019579 73019736 -116259818 + LTR1 LTR ERV1 1 157 -628 2138 142 0 0 chr6 73019749 73020058 -116259496 + AluSx SINE Alu 3 311 -1 3431 173 23 5 chr6 73020061 73020720 -116258834 + L1MB2 LINE L1 5499 6169 -2 23 33 0 0 chr6 73020722 73020752 -116258802 + AT_rich Low_complexity Low_complexity 1 30 0 289 202 141 20 chr6 73021072 73021171 -116258383 + Charlie1 DNA MER1_type 56 166 -2595 931 216 5 5 chr6 73021173 73021377 -116258177 + Charlie1 DNA MER1_type 2310 2513 -248 30 27 0 0 chr6 73021412 73021449 -116258105 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr6 73021504 73021541 -116258013 + AT_rich Low_complexity Low_complexity 1 37 0 243 159 175 16 chr6 73021648 73021711 -116257843 + L1MB2 LINE L1 6077 6149 -22 588 228 34 0 chr6 73021729 73021878 -116257676 + Charlie1 DNA MER1_type 2607 2760 -1 364 210 5 43 chr6 73022579 73022765 -116256789 + A-rich Low_complexity Low_complexity 1 179 0 2330 70 0 3 chr6 73022843 73023143 -116256411 - AluY SINE Alu -12 299 1 1744 236 103 41 chr6 73073297 73075051 -116204503 + SATR1 Satellite Satellite 1 1862 -338 717 252 89 50 chr6 73075221 73075862 -116203692 - SATR1 Satellite Satellite 0 666 1 479 273 0 39 chr6 73076390 73076595 -116202959 - SATR1 Satellite Satellite -131 339 143 1720 231 124 21 chr6 73076814 73077682 -116201872 - SATR1 Satellite Satellite 0 957 1 2159 217 114 8 chr6 73077710 73079187 -116200367 - SATR1 Satellite Satellite -1 1633 1 2156 178 120 23 chr6 73079214 73081636 -116197918 - SATR1 Satellite Satellite -28 2656 1 1823 226 93 6 chr6 73081668 73082204 -116197350 - SATR1 Satellite Satellite -3 582 1 2188 178 106 2 chr6 73082747 73084154 -116195400 - SATR1 Satellite Satellite -1 1553 1 1771 202 130 9 chr6 73084188 73084825 -116194729 - SATR1 Satellite Satellite -2 713 1 2116 191 101 0 chr6 73084853 73085658 -116193896 - SATR1 Satellite Satellite 0 885 1 2121 183 104 8 chr6 73085694 73088314 -116191240 - SATR1 Satellite Satellite -4 2871 1 1523 198 40 33 chr6 73088314 73088820 -116190734 + LTR22 LTR ERVK 1 577 -3 2070 192 103 19 chr6 73088853 73090862 -116188692 + SATR1 Satellite Satellite 1 2179 -131 1981 191 92 65 chr6 73090873 73092620 -116186934 + SATR1 Satellite Satellite 1 1794 -143 1990 207 112 12 chr6 73092729 73094758 -116184796 - SATR1 Satellite Satellite -1 2232 1 2115 176 106 6 chr6 73094788 73096850 -116182704 - SATR1 Satellite Satellite -3 2268 1 2057 187 108 17 chr6 73096878 73099833 -116179721 + SATR1 Satellite Satellite 1 3224 -7 1627 214 126 2 chr6 73099873 73100279 -116179275 + SATR1 Satellite Satellite 6 461 -9 2133 198 104 7 chr6 73100317 73106428 -116173126 + SATR1 Satellite Satellite 1 6704 0 2282 185 99 9 chr6 73106457 73110325 -116169229 + SATR1 Satellite Satellite 1 4216 0 2253 169 97 21 chr6 73110353 73112454 -116167100 + SATR1 Satellite Satellite 1 2262 0 1963 187 122 11 chr6 73112483 73113191 -116166363 + SATR1 Satellite Satellite 1 786 -15 968 220 80 67 chr6 73113369 73113859 -116165695 + HsTC2 DNA Tc2 1337 1832 -66 458 245 18 74 chr6 73114662 73114825 -116164729 - MIR SINE MIR -13 249 96 231 313 0 0 chr6 73115322 73115402 -116164152 + GA-rich Low_complexity Low_complexity 2 81 0 186 189 0 0 chr6 73115420 73115457 -116164097 + GA-rich Low_complexity Low_complexity 4 40 0 2063 187 109 15 chr6 73115600 73118747 -116160807 - SATR1 Satellite Satellite 0 3441 1 274 244 25 134 chr6 73119533 73119688 -116159866 - L3 LINE CR1 -302 1275 1143 475 227 72 0 chr6 73119688 73119785 -116159769 + MER5B DNA MER1_type 1 104 -74 1357 169 113 37 chr6 73119792 73120118 -116159436 - MER101B LTR ERV1 0 570 220 346 153 208 0 chr6 73120123 73120195 -116159359 - MER101B LTR ERV1 -475 95 9 331 182 76 0 chr6 73120212 73120278 -116159276 + MER5B DNA MER1_type 108 178 0 376 107 107 68 chr6 73120621 73120678 -116158876 - LTR37A LTR ERV1 0 426 362 1874 158 164 0 chr6 73120678 73121044 -116158510 - MSTA LTR MaLR 0 428 3 376 107 107 68 chr6 73121044 73121089 -116158465 - LTR37A LTR ERV1 -64 362 320 562 170 130 81 chr6 73121118 73121341 -116158213 - LTR37A LTR ERV1 -170 256 23 2120 181 97 28 chr6 73121478 73123242 -116156312 - SATR1 Satellite Satellite -18 1885 1 2277 169 109 9 chr6 73124079 73128106 -116151448 + SATR1 Satellite Satellite 1 4429 -4 2231 161 108 17 chr6 73128141 73129471 -116150083 + SATR1 Satellite Satellite 1 1451 -8 4862 41 0 1 chr6 73129574 73130340 -116149214 + L1P2 LINE L1 4798 5562 -592 1472 241 51 11 chr6 73130349 73130879 -116148675 + L1MEc LINE L1 2170 2677 -3538 21 0 0 0 chr6 73131183 73131204 -116148350 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr6 73132048 73132091 -116147463 + AT_rich Low_complexity Low_complexity 1 43 0 338 99 99 0 chr6 73132192 73132354 -116147200 + (TA)n Simple_repeat Simple_repeat 2 179 0 1644 254 43 32 chr6 73133117 73133720 -116145834 + L1MD1 LINE L1 5378 5925 -317 422 324 45 0 chr6 73133801 73133980 -116145574 + L1ME1 LINE L1 5956 6142 -24 290 276 20 0 chr6 73134045 73134143 -116145411 + L1ME LINE L1 538 637 -6188 247 262 48 0 chr6 73134140 73134243 -116145311 + L1ME LINE L1 1494 1601 -5224 * 212 286 16 0 chr6 73134258 73134321 -116145233 + GA-rich Low_complexity Low_complexity 3 66 0 350 324 19 60 chr6 73134357 73134573 -116144981 + L1ME LINE L1 1444 1650 -4892 1802 137 50 28 chr6 73134575 73134897 -116144657 + THE1B LTR MaLR 2 330 -34 590 221 0 39 chr6 73134898 73135025 -116144529 + FLAM_A SINE Alu 2 123 -10 23 0 0 0 chr6 73135025 73135048 -116144506 + AT_rich Low_complexity Low_complexity 1 23 0 401 91 0 0 chr6 73135102 73135168 -116144386 - L1MA3 LINE L1 -1 6304 6239 19356 176 22 21 chr6 73135168 73141762 -116137792 - L1M1 LINE L1 -692 7032 12 8418 208 30 24 chr6 73141758 73143551 -116136003 - L1M3f LINE L1 -4289 2276 87 * 318 26 0 0 chr6 73143551 73143590 -116135964 + (TAGA)n Simple_repeat Simple_repeat 1 39 0 8418 208 30 24 chr6 73143590 73143669 -116135885 - L1M3f LINE L1 -6478 87 10 627 228 140 39 chr6 73143673 73143695 -116135859 + L1ME LINE L1 2743 2761 -3883 2014 125 10 7 chr6 73143695 73143991 -116135563 + AluSg SINE Alu 3 299 -11 627 228 140 39 chr6 73143991 73144324 -116135230 + L1ME LINE L1 2761 3134 -3510 757 270 134 5 chr6 73144358 73144791 -116134763 + L1ME LINE L1 4741 5229 -1415 262 282 88 28 chr6 73144831 73145012 -116134542 + L1ME LINE L1 5377 5568 -1076 359 244 12 0 chr6 73145012 73145098 -116134456 + L1ME1 LINE L1 5749 5835 -331 2877 155 14 8 chr6 73145104 73145664 -116133890 + L1PB4 LINE L1 5200 5762 -394 262 284 0 0 chr6 73145667 73145734 -116133820 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 1538 161 4 8 chr6 73145734 73145988 -116133566 + L1PB4 LINE L1 5883 6135 -21 984 307 10 0 chr6 73146018 73146321 -116133233 + L1ME1 LINE L1 5858 6163 -3 743 185 123 51 chr6 73146745 73147037 -116132517 + MER33 DNA MER1_type 7 319 -5 1027 239 22 4 chr6 73147060 73147290 -116132264 + MLT1E2 LTR MaLR 1 234 -392 4131 228 50 63 chr6 73147326 73148758 -116130796 + L1MDa LINE L1 743 2154 -4386 321 330 101 25 chr6 73149002 73149357 -116130197 + L1ME LINE L1 5756 6137 -531 1815 154 35 0 chr6 73151006 73151291 -116128263 + AluSg SINE Alu 1 295 -15 396 319 213 26 chr6 73152303 73152810 -116126744 + L2 LINE L2 1904 2505 -809 205 359 13 0 chr6 73153764 73153842 -116125712 + MIR SINE MIR 82 160 -102 230 321 36 50 chr6 73155251 73155391 -116124163 - MIR SINE MIR -93 169 32 563 116 0 0 chr6 73155511 73155597 -116123957 + AluS SINE Alu 222 307 -2 383 352 14 0 chr6 73155662 73155804 -116123750 - MIR SINE MIR -9 253 110 514 286 107 21 chr6 73155811 73156264 -116123290 + LTR33 LTR ERVL 10 521 0 331 333 38 0 chr6 73156803 73156908 -116122646 - L2 LINE L2 -1 3312 3204 3915 127 57 14 chr6 73157414 73158121 -116121433 - L1MA4A LINE L1 -8 6295 5559 6142 200 21 16 chr6 73158136 73159922 -116119632 - L1 LINE L1 -2424 4424 2620 461 150 0 0 chr6 73159922 73160002 -116119552 - MADE1 DNA Mariner 0 80 1 6142 200 21 16 chr6 73160002 73160682 -116118872 - L1 LINE L1 -4228 2620 1945 2744 219 13 40 chr6 73160707 73161410 -116118144 - L1 LINE L1 -6001 848 3 507 224 122 63 chr6 73161732 73161987 -116117567 + L1MC4 LINE L1 7199 7468 -574 26 74 0 0 chr6 73162118 73162172 -116117382 + AT_rich Low_complexity Low_complexity 1 54 0 328 247 93 0 chr6 73162636 73162733 -116116821 - MIR SINE MIR -50 212 107 880 272 102 77 chr6 73166284 73166736 -116112818 + MLT2B1 LTR ERVL 1 463 -57 1059 253 22 4 chr6 73166773 73167002 -116112552 + MER8 DNA MER2_type 2 234 -5 333 0 0 0 chr6 73167008 73167045 -116112509 + (CA)n Simple_repeat Simple_repeat 2 38 0 434 289 89 13 chr6 73168248 73168441 -116111113 - MLT1H1 LTR MaLR 0 590 369 800 270 44 68 chr6 73168507 73168874 -116110680 - MLT1H1 LTR MaLR -185 370 13 1162 213 49 63 chr6 73169235 73169601 -116109953 - MLT1A1 LTR MaLR -4 361 1 21 0 0 0 chr6 73169710 73169731 -116109823 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 73170490 73170519 -116109035 + AT_rich Low_complexity Low_complexity 1 29 0 6640 68 13 0 chr6 73171334 73172719 -116106835 - L1PA7 LINE L1 -6 6148 4768 7827 243 67 29 chr6 73172867 73175530 -116104024 + L1PA13 LINE L1 1 2826 -3971 326 255 43 0 chr6 73175535 73175629 -116103925 + L1 LINE L1 3614 3711 -3086 580 295 84 12 chr6 73177957 73178320 -116101234 + L1MEc LINE L1 2241 2597 -3618 492 250 15 0 chr6 73178614 73178750 -116100804 - L1MCc LINE L1 -3615 3326 3189 1444 295 79 48 chr6 73178801 73180607 -116098947 - L1MCc LINE L1 -4394 2728 662 421 259 40 50 chr6 73181134 73181335 -116098219 - HAL1 LINE L1 -882 1625 1427 300 318 91 50 chr6 73181335 73181653 -116097901 - L1MCa LINE L1 -4964 1462 1132 1951 136 6 19 chr6 73182162 73182478 -116097076 - AluSx SINE Alu 0 312 1 1820 109 53 11 chr6 73183948 73184231 -116095323 + AluJb SINE Alu 1 295 -17 236 279 0 0 chr6 73184544 73184612 -116094942 + T-rich Low_complexity Low_complexity 1 68 0 294 343 49 0 chr6 73185239 73185382 -116094172 + MLT1J LTR MaLR 111 260 -251 2212 126 0 0 chr6 73185740 73186050 -116093504 + AluSg SINE Alu 1 310 0 415 315 9 0 chr6 73187376 73187484 -116092070 - MIR3 SINE MIR -13 195 87 233 326 51 20 chr6 73187667 73187765 -116091789 - MER5A DNA MER1_type -7 182 82 28 91 0 0 chr6 73188032 73188109 -116091445 + AT_rich Low_complexity Low_complexity 1 77 0 23 33 0 0 chr6 73188164 73188194 -116091360 + AT_rich Low_complexity Low_complexity 1 30 0 2914 219 35 13 chr6 73189182 73189265 -116090289 - L1MB8 LINE L1 -301 5877 5797 2035 135 0 10 chr6 73189265 73189576 -116089978 + AluSx SINE Alu 1 308 -4 2914 219 35 13 chr6 73189576 73190781 -116088773 - L1MB8 LINE L1 -381 5797 4557 445 215 19 0 chr6 73190778 73190885 -116088669 + L1M4 LINE L1 4324 4432 -1714 * 23 0 0 0 chr6 73190907 73190930 -116088624 + AT_rich Low_complexity Low_complexity 1 23 0 342 269 78 21 chr6 73191002 73191143 -116088411 - HAL1 LINE L1 -908 1599 1451 456 319 66 53 chr6 73191209 73191620 -116087934 - L1MEd LINE L1 -4862 1257 842 340 188 94 0 chr6 73191624 73191709 -116087845 + L1MA8 LINE L1 6197 6289 -2 314 270 62 28 chr6 73191722 73191900 -116087654 - L1MEd LINE L1 -5289 830 647 27 73 0 0 chr6 73192459 73192514 -116087040 + AT_rich Low_complexity Low_complexity 1 55 0 21 57 0 0 chr6 73192689 73192724 -116086830 + AT_rich Low_complexity Low_complexity 1 35 0 349 321 50 7 chr6 73192970 73193110 -116086444 - MIR SINE MIR -32 230 85 740 92 23 6 chr6 73193569 73193702 -116085852 - L1P LINE L1 -840 5306 5191 303 88 0 53 chr6 73193680 73193737 -116085817 + L1PA6 LINE L1 6101 6154 0 * 26 50 0 0 chr6 73194115 73194155 -116085399 + AT_rich Low_complexity Low_complexity 1 40 0 25 65 0 0 chr6 73194454 73194500 -116085054 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr6 73195209 73195232 -116084322 + AT_rich Low_complexity Low_complexity 1 23 0 669 151 17 73 chr6 73195851 73196030 -116083524 - L1MA10 LINE L1 -3 6331 6163 1781 158 145 16 chr6 73196041 73196420 -116083134 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr6 73197172 73197194 -116082360 + AT_rich Low_complexity Low_complexity 1 22 0 188 163 23 0 chr6 73197388 73197431 -116082123 + T-rich Low_complexity Low_complexity 2 45 0 4775 106 29 49 chr6 73197702 73198497 -116081057 - MER4E LTR ERV1 0 779 1 360 82 13 0 chr6 73199030 73199140 -116080414 - MADE1 DNA Mariner 0 80 1 1289 171 146 9 chr6 73199150 73199271 -116080283 - LTR37A LTR ERV1 -53 373 270 3903 58 14 0 chr6 73199271 73199754 -116079800 + LTR2B LTR ERV1 1 490 0 1289 171 146 9 chr6 73199754 73199954 -116079600 - LTR37A LTR ERV1 -156 270 8 312 159 159 29 chr6 73199981 73200049 -116079505 + Tigger5 DNA MER2_type 2 78 -2245 434 203 0 0 chr6 73200049 73200128 -116079426 - Tigger5 DNA MER2_type -3 2320 2242 405 213 0 0 chr6 73200120 73200200 -116079354 + Tigger5 DNA MER2_type 2244 2323 0 * 5820 161 12 11 chr6 73200891 73202288 -116077266 + L1M2 LINE L1 4247 5642 -658 34 24 0 0 chr6 73202599 73202640 -116076914 + AT_rich Low_complexity Low_complexity 1 41 0 2119 240 11 11 chr6 73202854 73203329 -116076225 + MLT1A2-int LTR MaLR 1253 1727 -8 1596 234 19 11 chr6 73203337 73203708 -116075846 + MLT1A2 LTR MaLR 1 374 0 277 311 38 28 chr6 73204352 73204458 -116075096 - MIR SINE MIR -120 142 36 1654 170 0 28 chr6 73204574 73204863 -116074691 + AluJo SINE Alu 1 281 -31 21 0 0 0 chr6 73204863 73204884 -116074670 + AT_rich Low_complexity Low_complexity 1 21 0 419 35 18 0 chr6 73204970 73205027 -116074527 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 1613 155 0 48 chr6 73205320 73205629 -116073925 - L1MA7 LINE L1 -247 6044 5751 378 176 12 0 chr6 73205629 73205713 -116073841 + L1MA7 LINE L1 6204 6289 -2 21 36 0 0 chr6 73206416 73206444 -116073110 + AT_rich Low_complexity Low_complexity 1 28 0 195 69 0 0 chr6 73206589 73206618 -116072936 + (T)n Simple_repeat Simple_repeat 1 29 0 2263 56 0 11 chr6 73207381 73207710 -116071844 - AluY SINE Alu 0 326 1 23 33 0 0 chr6 73207719 73207749 -116071805 + AT_rich Low_complexity Low_complexity 1 30 0 409 293 78 36 chr6 73209322 73209452 -116070102 - MIR SINE MIR -63 199 59 2095 102 0 20 chr6 73209452 73209755 -116069799 + AluSg SINE Alu 1 297 -13 409 293 78 36 chr6 73209755 73209791 -116069763 - MIR SINE MIR -203 59 26 605 309 39 5 chr6 73210163 73210370 -116069184 + MIR SINE MIR 39 252 -10 22 56 0 0 chr6 73211966 73212002 -116067552 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 73212051 73212073 -116067481 + AT_rich Low_complexity Low_complexity 1 22 0 376 338 81 9 chr6 73212575 73212797 -116066757 + MIR SINE MIR 21 258 -4 24 0 0 0 chr6 73214679 73214703 -116064851 + AT_rich Low_complexity Low_complexity 1 24 0 525 73 107 4 chr6 73214703 73215555 -116063999 + (TA)n Simple_repeat Simple_repeat 1 939 0 21 0 0 0 chr6 73215559 73215580 -116063974 + AT_rich Low_complexity Low_complexity 1 21 0 537 96 93 4 chr6 73215580 73215852 -116063702 + (TA)n Simple_repeat Simple_repeat 1 296 0 853 293 103 42 chr6 73215925 73216430 -116063124 + MLT1F LTR MaLR 7 542 0 22 0 0 0 chr6 73218377 73218399 -116061155 + AT_rich Low_complexity Low_complexity 1 22 0 185 310 17 0 chr6 73218944 73219002 -116060552 - MIR SINE MIR -15 247 189 1829 164 15 69 chr6 73219085 73219493 -116060061 - MLT1B LTR MaLR -4 386 1 22 0 0 0 chr6 73219823 73219845 -116059709 + AT_rich Low_complexity Low_complexity 1 22 0 2369 173 58 0 chr6 73220151 73220618 -116058936 - L1MC1 LINE L1 0 6333 5840 1466 159 110 6 chr6 73220621 73220966 -116058588 - L1MCa LINE L1 -4824 1602 1222 440 361 25 8 chr6 73221309 73221550 -116058004 + LTR16A LTR ERVL 206 450 0 254 307 45 34 chr6 73222036 73222215 -116057339 + L1MCa LINE L1 18 198 -6228 1259 178 35 18 chr6 73222793 73223079 -116056475 - L1MCa LINE L1 -4016 2410 2120 228 182 0 0 chr6 73223128 73223172 -116056382 + (TG)n Simple_repeat Simple_repeat 2 45 0 1179 274 95 23 chr6 73223179 73223925 -116055629 + L1MCa LINE L1 1665 2464 -4143 2679 159 17 0 chr6 73223927 73224343 -116055211 - MSTA LTR MaLR -5 423 1 245 274 69 0 chr6 73224343 73224445 -116055109 + L1MCa LINE L1 2420 2528 -3898 182 36 0 36 chr6 73224447 73224475 -116055079 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1763 132 4 14 chr6 73224475 73224756 -116054798 - L1PB1 LINE L1 -5 6862 6585 2054 91 17 5 chr6 73224756 73225111 -116054443 + LTR7 LTR ERV1 1 448 -2 14707 118 17 29 chr6 73225113 73228009 -116051545 + HERVH LTR ERV1 1 2995 -4718 869 167 7 0 chr6 73227988 73228138 -116051416 + HERVH LTR ERV1 3140 3290 -4423 * 1546 141 8 4 chr6 73228128 73228370 -116051184 + HERVH LTR ERV1 3492 3734 -3979 7680 110 24 11 chr6 73228382 73229535 -116050019 + HERVH LTR ERV1 3994 5149 -2564 1400 125 19 0 chr6 73229536 73229752 -116049802 + HERVH LTR ERV1 5600 5819 -1894 * 2118 127 53 13 chr6 73229750 73230127 -116049427 + HERVH LTR ERV1 7322 7713 0 2707 91 95 0 chr6 73230127 73230536 -116049018 + LTR7 LTR ERV1 1 448 -2 512 118 0 0 chr6 73230537 73230613 -116048941 - L1PB1 LINE L1 -278 6589 6514 * 16835 179 35 11 chr6 73230606 73231608 -116047946 - L1PB1 LINE L1 -657 6210 5234 221 75 25 0 chr6 73231608 73231648 -116047906 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 16835 179 35 11 chr6 73231648 73231694 -116047860 - L1PB1 LINE L1 -1633 5234 5191 282 56 0 0 chr6 73231694 73231730 -116047824 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 16835 179 35 11 chr6 73231730 73233210 -116046344 - L1PB1 LINE L1 -1676 5191 3748 1959 154 3 3 chr6 73233210 73233509 -116046045 - AluSx SINE Alu -11 301 3 16835 179 35 11 chr6 73233509 73237037 -116042517 - L1PB1 LINE L1 -3119 3748 1 1566 237 50 51 chr6 73237071 73238410 -116041144 + L1MD3 LINE L1 6559 7987 -8 200 173 19 19 chr6 73239505 73239557 -116039997 + (TTA)n Simple_repeat Simple_repeat 1 52 0 1124 211 133 33 chr6 73240150 73240482 -116039072 + MLT1A1 LTR MaLR 1 365 0 35 33 0 17 chr6 73242374 73242394 -116037160 + AT_rich Low_complexity Low_complexity 1 20 -39 946 9 0 0 chr6 73242394 73242503 -116037051 + L1PA2 LINE L1 6046 6154 -1 35 33 0 17 chr6 73242503 73242542 -116037012 + AT_rich Low_complexity Low_complexity 20 59 0 22 35 0 0 chr6 73242577 73242606 -116036948 + AT_rich Low_complexity Low_complexity 1 29 0 315 303 46 20 chr6 73242926 73243078 -116036476 + LTR68 LTR ERV1 278 433 -307 1689 172 46 30 chr6 73243179 73243546 -116036008 - THE1C LTR MaLR -2 373 1 268 356 30 23 chr6 73243747 73243879 -116035675 - MIR SINE MIR -95 167 35 373 266 14 127 chr6 73244620 73245044 -116034510 + HAL1b LINE L1 109 484 -864 410 231 19 138 chr6 73245134 73245445 -116034109 - MER46C DNA MER2_type -41 297 24 189 147 0 0 chr6 73245745 73245779 -116033775 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 26 0 0 0 chr6 73245797 73245823 -116033731 + AT_rich Low_complexity Low_complexity 1 26 0 291 274 85 19 chr6 73246217 73246323 -116033231 + HAL1b LINE L1 1153 1265 -83 658 335 77 37 chr6 73246383 73247060 -116032494 + L1M4 LINE L1 2456 3159 -2987 355 336 65 47 chr6 73247462 73247739 -116031815 + L1M4 LINE L1 3607 3888 -2258 25 0 0 0 chr6 73247949 73247974 -116031580 + AT_rich Low_complexity Low_complexity 1 25 0 245 351 0 0 chr6 73248314 73248388 -116031166 - MIR SINE MIR -128 134 61 10549 52 15 1 chr6 73248768 73250890 -116028664 - L1PA6 LINE L1 -3 6151 4010 7387 140 17 0 chr6 73250890 73252009 -116027545 - L1P LINE L1 -5008 1138 1 28 29 0 0 chr6 73253332 73253367 -116026187 + AT_rich Low_complexity Low_complexity 1 35 0 570 255 115 20 chr6 73253500 73253814 -116025740 - MLT1A2 LTR MaLR 0 374 3 183 80 0 0 chr6 73253834 73253859 -116025695 + (TATG)n Simple_repeat Simple_repeat 4 28 0 2068 117 10 17 chr6 73254691 73254991 -116024563 + AluSp SINE Alu 1 298 -15 2138 130 0 0 chr6 73255600 73255908 -116023646 - AluSc SINE Alu -1 308 1 1514 223 18 89 chr6 73256962 73257638 -116021916 + LTR9 LTR ERV1 1 777 -2 581 268 105 26 chr6 73257658 73257886 -116021668 - MLT1L LTR MaLR -369 246 1 288 319 44 18 chr6 73257886 73257999 -116021555 + L2 LINE L2 3194 3309 -4 1280 152 289 18 chr6 73258103 73258585 -116020969 + MER4A LTR ERV1 1 663 -1 1051 221 30 34 chr6 73258603 73258901 -116020653 + AluJb SINE Alu 2 298 -4 724 304 53 12 chr6 73258939 73259186 -116020368 + L2 LINE L2 1873 2129 -1185 5781 102 10 62 chr6 73259187 73259781 -116019773 + L1P LINE L1 4079 4605 -1541 19599 35 3 1 chr6 73259781 73262947 -116016607 - L1PA4 LINE L1 -8 6147 2977 5781 102 10 62 chr6 73262947 73263324 -116016230 + L1P LINE L1 4605 5000 -1146 256 164 0 0 chr6 73263595 73263650 -116015904 + C-rich Low_complexity Low_complexity 1 55 0 211 146 12 73 chr6 73263748 73263830 -116015724 + C-rich Low_complexity Low_complexity 2 78 0 17716 38 1 1 chr6 73263840 73266024 -116013530 - L1P LINE L1 -985 5161 2977 4271 121 15 1 chr6 73266023 73266692 -116012862 + L1P LINE L1 4615 5292 -854 * 251 148 74 37 chr6 73366800 73366854 -115912700 - MLT1L LTR MaLR -55 560 505 4494 76 52 9 chr6 73367600 73368233 -115911321 - PABL_A LTR ERV1 0 660 1 41 30 0 15 chr6 73368247 73368271 -115911283 + AT_rich Low_complexity Low_complexity 1 24 -41 2004 134 0 7 chr6 73368271 73368563 -115910991 + AluSx SINE Alu 1 290 -22 41 30 0 15 chr6 73368563 73368604 -115910950 + AT_rich Low_complexity Low_complexity 24 65 0 24 0 0 0 chr6 73368939 73368963 -115910591 + AT_rich Low_complexity Low_complexity 1 24 0 3625 90 12 4 chr6 73369097 73369606 -115909948 - LTR10D LTR ERV1 0 513 1 24 107 0 0 chr6 73370918 73370974 -115908580 + AT_rich Low_complexity Low_complexity 1 56 0 27 62 0 0 chr6 73371137 73371185 -115908369 + AT_rich Low_complexity Low_complexity 1 48 0 6728 26 1 12 chr6 73371284 73372095 -115907459 - L1PA3 LINE L1 -1 6154 5353 * 12367 40 3 0 chr6 73372094 73373632 -115905922 + L1P LINE L1 3809 5357 -797 26 82 0 0 chr6 73373766 73373827 -115905727 + AT_rich Low_complexity Low_complexity 1 61 0 21 36 0 0 chr6 73374577 73374605 -115904949 + AT_rich Low_complexity Low_complexity 1 28 0 1921 106 11 9 chr6 73375457 73375847 -115903707 + LTR7 LTR ERV1 1 442 -8 2734 167 34 27 chr6 73375855 73376447 -115903107 + HERVH LTR ERV1 1 559 -7154 524 184 0 0 chr6 73376555 73376642 -115902912 + HERVH LTR ERV1 2897 2983 -4730 7920 128 5 4 chr6 73376644 73378346 -115901208 + HERVH LTR ERV1 3507 5286 -1805 1435 127 5 5 chr6 73378350 73378570 -115900984 + HERVH LTR ERV1 5600 5819 -1894 1307 121 10 0 chr6 73378574 73378780 -115900774 + HERVH LTR ERV1 7328 7535 -178 809 83 28 35 chr6 73378884 73379028 -115900526 + HERVH LTR ERV1 7571 7713 0 2220 95 132 37 chr6 73379028 73379437 -115900117 + LTR7 LTR ERV1 1 448 -2 298 278 116 58 chr6 73380087 73380260 -115899294 - LTR33 LTR ERVL -323 198 16 21 0 0 0 chr6 73380276 73380297 -115899257 + AT_rich Low_complexity Low_complexity 1 21 0 956 139 4 107 chr6 73380411 73380683 -115898871 - MER4A LTR ERV1 -101 563 261 672 101 0 10 chr6 73380683 73380782 -115898772 - MER4A LTR ERV1 -566 98 1 23 0 0 0 chr6 73381372 73381395 -115898159 + AT_rich Low_complexity Low_complexity 1 23 0 291 130 19 0 chr6 73381642 73381696 -115897858 - L1MA3 LINE L1 0 6305 6251 1056 112 31 41 chr6 73381715 73381911 -115897643 - L1MA1 LINE L1 -137 6165 5972 43 56 0 0 chr6 73383249 73383320 -115896234 + AT_rich Low_complexity Low_complexity 1 71 0 184 365 64 4 chr6 73383320 73383451 -115896103 - L2 LINE L2 -4 3309 3168 2485 174 9 80 chr6 73383828 73384352 -115895202 + Tigger1 DNA MER2_type 1 487 -1931 2151 110 3 0 chr6 73384355 73384645 -115894909 + AluSg SINE Alu 3 293 -17 3886 120 3 2 chr6 73384652 73385230 -115894324 + Tigger1 DNA MER2_type 1198 1776 -642 2071 169 95 0 chr6 73385230 73385621 -115893933 + MSTA LTR MaLR 1 428 0 3486 141 68 5 chr6 73385623 73386228 -115893326 + Tigger1 DNA MER2_type 1775 2417 -1 189 147 0 0 chr6 73386282 73386316 -115893238 + (TA)n Simple_repeat Simple_repeat 1 34 0 554 195 115 0 chr6 73386316 73386429 -115893125 - FLAM_C SINE Alu -14 129 4 222 37 0 0 chr6 73386762 73386789 -115892765 + (TG)n Simple_repeat Simple_repeat 2 28 0 25 31 0 0 chr6 73387951 73387983 -115891571 + AT_rich Low_complexity Low_complexity 1 32 0 1679 181 107 28 chr6 73388894 73389287 -115890267 + MSTB LTR MaLR 1 424 -2 650 187 24 42 chr6 73389506 73389706 -115889848 + L1P LINE L1 5104 5283 -863 1067 163 51 51 chr6 73389859 73390116 -115889438 - Tigger2 DNA MER2_type 0 2718 2462 203 330 85 9 chr6 73391802 73391908 -115887646 + L2 LINE L2 3175 3288 -25 871 277 122 30 chr6 73391987 73392446 -115887108 + MLT1F1 LTR MaLR 67 567 0 766 222 107 23 chr6 73394230 73394446 -115885108 - MER31A LTR ERV1 -4 481 248 27 0 0 0 chr6 73394786 73394813 -115884741 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr6 73394906 73394931 -115884623 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr6 73395965 73395998 -115883556 + AT_rich Low_complexity Low_complexity 1 33 0 206 214 0 0 chr6 73396080 73396122 -115883432 + L2 LINE L2 3271 3312 -1 221 211 77 0 chr6 73396689 73396741 -115882813 + L2 LINE L2 3236 3291 -22 691 216 258 0 chr6 73396774 73396964 -115882590 + MIR SINE MIR 3 241 -21 5528 35 5 0 chr6 73397106 73397773 -115881781 - L1P LINE L1 -949 5197 4528 252 26 0 0 chr6 73397771 73397809 -115881745 + L1PA3 LINE L1 6115 6152 -3 * 303 250 48 10 chr6 73398367 73398471 -115881083 - HAL1b LINE L1 -7 1341 1234 2630 119 5 7 chr6 73398474 73398887 -115880667 - L1P LINE L1 -995 5151 4740 330 240 20 108 chr6 73398889 73399093 -115880461 - HAL1b LINE L1 -129 1219 1034 289 272 26 26 chr6 73399178 73399292 -115880262 - LTR67 LTR ERVL -15 542 429 337 244 122 45 chr6 73399878 73400124 -115879430 - HAL1b LINE L1 -867 481 217 2309 101 3 0 chr6 73400167 73400474 -115879080 - AluSp SINE Alu -4 309 2 535 276 9 62 chr6 73401755 73401965 -115877589 + MLT2C1 LTR ERVL 1 199 -198 979 204 41 5 chr6 73402547 73402743 -115876811 - MLT1D LTR MaLR -2 503 301 251 315 27 49 chr6 73403161 73403345 -115876209 - ERVL LTR ERVL -381 5383 5204 1973 146 3 0 chr6 73403364 73403658 -115875896 - AluSc SINE Alu -14 295 1 435 306 28 17 chr6 73403858 73404038 -115875516 - ERVL LTR ERVL -784 4870 4689 628 173 107 33 chr6 73404292 73404561 -115874993 - MLT1B LTR MaLR 0 390 1 215 233 0 0 chr6 73405167 73405210 -115874344 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 4021 118 9 5 chr6 73405350 73405987 -115873567 + L1MA2 LINE L1 5662 6301 -3 376 295 70 30 chr6 73406045 73406245 -115873309 - L1ME LINE L1 -373 5748 5541 181 164 0 33 chr6 73406252 73406313 -115873241 + (TAA)n Simple_repeat Simple_repeat 3 61 0 28 79 0 0 chr6 73406384 73406447 -115873107 + AT_rich Low_complexity Low_complexity 1 63 0 23170 90 14 0 chr6 73407622 73411437 -115868117 - L1PA7 LINE L1 0 6154 2285 252 0 0 0 chr6 73411437 73411465 -115868089 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 23170 90 14 0 chr6 73411465 73411747 -115867807 - L1PA7 LINE L1 -3869 2285 2008 5241 118 12 11 chr6 73411910 73412731 -115866823 - L1PA12 LINE L1 -1 6167 5346 1905 162 7 0 chr6 73412807 73413115 -115866439 + AluSx SINE Alu 2 311 -1 1555 153 59 47 chr6 73413157 73413496 -115866058 - MER2 DNA MER2_type 0 344 2 25 0 0 0 chr6 73413727 73413752 -115865802 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr6 73413854 73413889 -115865665 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr6 73413948 73413971 -115865583 + AT_rich Low_complexity Low_complexity 1 23 0 1567 197 13 22 chr6 73414884 73415199 -115864355 + AluJo SINE Alu 1 312 0 958 50 0 0 chr6 73416174 73416295 -115863259 + L1PA4 LINE L1 6032 6152 -3 27 0 0 0 chr6 73416596 73416623 -115862931 + AT_rich Low_complexity Low_complexity 1 27 0 2687 142 25 2 chr6 73416623 73417061 -115862493 - L1PA16 LINE L1 -9 6157 5710 1325 199 36 3 chr6 73417066 73417367 -115862187 - L1 LINE L1 -1401 4745 4435 476 231 83 41 chr6 73417558 73417727 -115861827 + MER5B DNA MER1_type 2 177 -1 1398 183 90 7 chr6 73417928 73418207 -115861347 + AluSx SINE Alu 1 302 -10 276 30 0 0 chr6 73418207 73418240 -115861314 + (CA)n Simple_repeat Simple_repeat 2 34 0 369 294 19 19 chr6 73418631 73418748 -115860806 - MIR SINE MIR -64 144 39 278 335 112 0 chr6 73418839 73419000 -115860554 - MIR SINE MIR -26 236 58 1007 160 24 14 chr6 73419103 73419316 -115860238 - L1P LINE L1 -778 5368 5154 4434 118 12 1 chr6 73419721 73420398 -115859156 - L1PA12 LINE L1 -2 6166 5483 212 0 0 35 chr6 73420398 73420427 -115859127 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 335 111 19 0 chr6 73420429 73420483 -115859071 - L1PA12 LINE L1 -760 5401 5347 * 31245 61 151 4 chr6 73420481 73426176 -115853378 + L1PA3 LINE L1 52 6015 -140 830 317 144 62 chr6 73427605 73428259 -115851295 - HAL1 LINE L1 -1130 1377 645 1480 209 27 0 chr6 73428259 73428551 -115851003 + AluJb SINE Alu 1 300 -12 830 317 144 62 chr6 73428551 73428690 -115850864 - HAL1 LINE L1 -1862 645 519 2368 143 3 11 chr6 73428890 73429268 -115850286 + THE1C LTR MaLR 1 375 0 8162 123 57 26 chr6 73429268 73430587 -115848967 + THE1C-int LTR MaLR 2 1360 -220 339 128 11 106 chr6 73430587 73430681 -115848873 + L1PA15 LINE L1 6079 6163 -2 297 371 84 8 chr6 73432384 73432621 -115846933 - MIR SINE MIR 0 262 8 833 274 39 8 chr6 73433203 73433458 -115846096 - LTR16A LTR ERVL -10 440 178 4921 123 13 26 chr6 73433764 73434130 -115845424 - L1PB1 LINE L1 -4 6147 5778 414 0 0 0 chr6 73434130 73434176 -115845378 + (CA)n Simple_repeat Simple_repeat 2 47 0 4921 123 13 26 chr6 73434176 73434644 -115844910 - L1PB1 LINE L1 -373 5778 5324 3316 222 80 14 chr6 73434635 73436412 -115843142 - L1PBa LINE L1 -4819 2044 6 * 37187 94 8 8 chr6 73437189 73443330 -115836224 - L1PA6 LINE L1 -1 6153 11 32 26 0 0 chr6 73444086 73444125 -115835429 + AT_rich Low_complexity Low_complexity 1 39 0 736 110 0 0 chr6 73444412 73444512 -115835042 - LTR12 LTR ERV1 0 714 615 283 255 31 20 chr6 73444515 73444613 -115834941 - LTR30 LTR ERV1 -80 642 544 1693 91 99 4 chr6 73444613 73444866 -115834688 - LTR12 LTR ERV1 -437 277 1 57513 107 15 12 chr6 73444866 73453183 -115826371 - HERV9 LTR ERV1 0 8399 60 739 121 93 107 chr6 73453171 73453311 -115826243 - LTR12 LTR ERV1 -130 584 300 * 269 229 52 21 chr6 73453311 73453407 -115826147 - LTR30 LTR ERV1 -80 642 544 1559 112 117 4 chr6 73453407 73453656 -115825898 - LTR12 LTR ERV1 -437 277 1 2389 83 3 10 chr6 73453988 73454300 -115825254 + AluY SINE Alu 1 310 -1 1279 160 13 25 chr6 73454510 73454747 -115824807 + MER46A DNA MER2_type 2 235 -1 180 0 0 0 chr6 73454855 73454875 -115824679 + (A)n Simple_repeat Simple_repeat 1 20 0 342 285 85 44 chr6 73455150 73455539 -115824015 + HAL1b LINE L1 55 459 -889 583 271 90 68 chr6 73456259 73456525 -115823029 - L2 LINE L2 -1 3312 3041 607 287 102 45 chr6 73456684 73457172 -115822382 - L1M4 LINE L1 -2960 3186 2671 198 71 0 0 chr6 73457408 73457436 -115822118 + (CA)n Simple_repeat Simple_repeat 1 28 0 507 319 39 20 chr6 73457788 73458042 -115821512 + HAL1b LINE L1 380 638 -710 1711 91 0 0 chr6 73458449 73458681 -115820873 + L1PA11 LINE L1 5943 6174 0 371 324 62 29 chr6 73458683 73459099 -115820455 + L1M4c LINE L1 2274 2701 -3681 428 346 62 15 chr6 73459390 73459731 -115819823 + L1MEc LINE L1 750 1106 -5290 593 236 52 11 chr6 73459985 73460159 -115819395 + L1ME3A LINE L1 5989 6169 -1 320 339 46 0 chr6 73461311 73461441 -115818113 + L1ME3 LINE L1 5440 5575 -595 315 252 52 9 chr6 73461507 73461622 -115817932 + L1ME3 LINE L1 5701 5820 -301 561 280 39 10 chr6 73461901 73462086 -115817468 + MIR SINE MIR 25 216 -46 915 263 70 56 chr6 73463004 73463227 -115816327 - MLT1I LTR MaLR -31 378 147 1652 186 9 40 chr6 73463227 73463549 -115816005 + AluJo SINE Alu 1 312 0 915 263 70 56 chr6 73463549 73463698 -115815856 - MLT1I LTR MaLR -262 147 1 23 68 0 0 chr6 73463822 73463866 -115815688 + AT_rich Low_complexity Low_complexity 1 44 0 540 222 68 105 chr6 73465416 73465521 -115814033 + L1ME3 LINE L1 5848 5955 -207 3487 133 3 92 chr6 73465521 73466089 -115813465 + MER41B LTR ERV1 1 618 -17 2087 103 3 17 chr6 73466089 73466389 -115813165 - AluSc SINE Alu -10 299 4 1978 153 3 10 chr6 73466392 73466706 -115812848 - AluSx SINE Alu 0 312 1 3487 133 3 92 chr6 73466706 73466830 -115812724 + MER41B LTR ERV1 620 635 0 540 222 68 105 chr6 73466830 73466919 -115812635 + L1ME3 LINE L1 5955 6046 -116 13181 152 44 13 chr6 73466919 73469264 -115810290 - Tigger1 DNA MER2_type -1 2417 1 540 222 68 105 chr6 73469264 73469392 -115810162 + L1ME3 LINE L1 6046 6159 -3 2318 21 3 11 chr6 73469396 73469681 -115809873 - L1PA4 LINE L1 0 6155 5873 3210 211 69 7 chr6 73469795 73470640 -115808914 - L1 LINE L1 -2215 3931 3035 13864 172 22 27 chr6 73470645 73471154 -115808400 - L1MA3 LINE L1 -1 7723 7213 1659 191 30 0 chr6 73471154 73471457 -115808097 - AluJb SINE Alu 0 312 1 13864 172 22 27 chr6 73471457 73473499 -115806055 - L1MA3 LINE L1 -511 7213 5196 5318 68 3 0 chr6 73473499 73474193 -115805361 - L1PA8 LINE L1 -13 6159 5464 13864 172 22 27 chr6 73474193 73475818 -115803736 - L1MA3 LINE L1 -2528 5196 3565 317 0 70 0 chr6 73475818 73475861 -115803693 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 834 95 0 0 chr6 73475861 73475966 -115803588 - AluY SINE Alu -193 118 14 15821 169 14 30 chr6 73475971 73478915 -115800639 - L1MA3 LINE L1 -3998 3567 670 2023 108 10 45 chr6 73479445 73479759 -115799795 + AluSq SINE Alu 1 303 -10 562 271 13 20 chr6 73479762 73479913 -115799641 + MIR SINE MIR 26 175 -87 30 45 0 0 chr6 73482217 73482261 -115797293 + AT_rich Low_complexity Low_complexity 1 44 0 443 272 0 0 chr6 73482616 73482719 -115796835 + MER63 DNA MER1_type 684 786 -276 2089 123 0 0 chr6 73482854 73483185 -115796369 + AluSx SINE Alu 1 331 0 401 269 65 0 chr6 73484301 73484409 -115795145 - MER117 DNA MER1_type 0 197 83 23 0 0 0 chr6 73484658 73484681 -115794873 + AT_rich Low_complexity Low_complexity 1 23 0 26 82 0 0 chr6 73484942 73485003 -115794551 + AT_rich Low_complexity Low_complexity 1 61 0 450 264 168 32 chr6 73485204 73485359 -115794195 + MIR3 SINE MIR 32 207 -1 306 336 67 8 chr6 73485987 73486106 -115793448 + MIR SINE MIR 29 154 -108 482 292 80 0 chr6 73486327 73486464 -115793090 + MER63A DNA MER1_type 51 198 -12 22 35 0 0 chr6 73486744 73486773 -115792781 + AT_rich Low_complexity Low_complexity 1 29 0 198 330 9 46 chr6 73486787 73486896 -115792658 + MIR SINE MIR 157 261 -1 2042 117 14 14 chr6 73487282 73487573 -115791981 + AluSx SINE Alu 1 291 -21 485 290 135 5 chr6 73487889 73488082 -115791472 + LTR33 LTR ERVL 79 296 -225 696 287 112 20 chr6 73488092 73488395 -115791159 - LTR33 LTR ERVL -16 505 175 4828 23 0 5 chr6 73488528 73489094 -115790460 + L1PA3 LINE L1 5593 6155 0 22 35 0 0 chr6 73489134 73489163 -115790391 + AT_rich Low_complexity Low_complexity 1 29 0 1944 174 0 0 chr6 73489271 73489570 -115789984 + AluJb SINE Alu 9 307 -5 25 65 0 0 chr6 73489621 73489667 -115789887 + AT_rich Low_complexity Low_complexity 1 46 0 690 293 32 28 chr6 73489875 73490128 -115789426 + MIR SINE MIR 7 260 -2 395 318 46 6 chr6 73490172 73490345 -115789209 + L1 LINE L1 4632 4811 -1335 285 277 4 15 chr6 73491674 73491760 -115787794 + MLT1I LTR MaLR 78 160 -249 242 275 0 44 chr6 73491889 73491980 -115787574 + MLT1I LTR MaLR 323 409 0 285 146 0 0 chr6 73492163 73492211 -115787343 + (TA)n Simple_repeat Simple_repeat 1 48 0 371 273 44 88 chr6 73492362 73492443 -115787111 - MLT1J LTR MaLR -58 453 370 1967 138 90 56 chr6 73492443 73492856 -115786698 + MSTA LTR MaLR 2 428 0 371 273 44 88 chr6 73492856 73492979 -115786575 - MLT1J LTR MaLR -141 370 258 204 40 0 0 chr6 73493371 73493396 -115786158 + (CA)n Simple_repeat Simple_repeat 2 26 0 286 269 157 0 chr6 73494130 73494238 -115785316 + MER5A DNA MER1_type 64 188 -1 1456 115 0 0 chr6 73494354 73494571 -115784983 - L1PB1 LINE L1 -2 6149 5933 5698 229 14 4 chr6 73494573 73495126 -115784428 - L1 LINE L1 -2422 3724 3178 186 43 0 0 chr6 73495126 73495149 -115784405 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5698 229 14 4 chr6 73495149 73496108 -115783446 - L1 LINE L1 -2968 3178 2197 * 8540 115 61 1 chr6 73496102 73497871 -115781683 - L1PBa LINE L1 -3995 2868 845 26 0 0 0 chr6 73498114 73498140 -115781414 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr6 73498655 73498676 -115780878 + AT_rich Low_complexity Low_complexity 1 21 0 1414 227 30 42 chr6 73498681 73499082 -115780472 - MLT1C LTR MaLR 0 467 72 295 21 12 0 chr6 73499085 73499126 -115780428 - MLT2A2 LTR ERVL -4 449 416 314 225 56 22 chr6 73499169 73499258 -115780296 + L1MC4 LINE L1 6612 6703 -1339 2779 88 2 10 chr6 73499263 73499663 -115779891 - MLT2A1 LTR ERVL -47 397 1 40891 81 12 3 chr6 73499663 73505265 -115774289 - HERVL-A1-A1 LTR ERVL 0 5654 1 2890 92 6 79 chr6 73505265 73505744 -115773810 - MLT2A1 LTR ERVL 0 444 1 391 208 0 0 chr6 73505744 73505821 -115773733 - MLT1C LTR MaLR -390 77 1 215 246 42 66 chr6 73505937 73506079 -115773475 + MIR3 SINE MIR 33 172 -36 15839 188 42 46 chr6 73506218 73508743 -115770811 + L1MA2 LINE L1 17 2512 -5053 2301 106 26 0 chr6 73508743 73509046 -115770508 + AluY SINE Alu 1 311 0 15839 188 42 46 chr6 73509046 73511526 -115768028 + L1MA2 LINE L1 2512 5000 -2565 1900 164 32 27 chr6 73511526 73511899 -115767655 + THE1C LTR MaLR 1 375 0 8064 132 78 40 chr6 73511899 73513415 -115766139 + THE1C-int LTR MaLR 1 1574 -6 2070 144 19 27 chr6 73513420 73513796 -115765758 + THE1C LTR MaLR 1 373 -2 5173 139 56 14 chr6 73513797 73515410 -115764144 + L1MA2 LINE L1 5988 7671 -52 1943 145 24 0 chr6 73515484 73515781 -115763773 + AluJb SINE Alu 1 304 -8 1192 274 0 10 chr6 73515967 73516259 -115763295 + AluJo SINE Alu 13 301 -11 221 208 19 0 chr6 73517734 73517787 -115761767 + (TA)n Simple_repeat Simple_repeat 1 54 0 22 0 0 0 chr6 73519392 73519414 -115760140 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr6 73519661 73519699 -115759855 + AT_rich Low_complexity Low_complexity 1 38 0 183 313 0 60 chr6 73519704 73519771 -115759783 - L2 LINE L2 0 3272 3210 2223 122 3 0 chr6 73520027 73520351 -115759203 - AluSp SINE Alu 0 325 1 225 253 84 42 chr6 73520609 73520704 -115758850 + L2 LINE L2 3168 3266 -6 345 272 0 125 chr6 73520718 73520854 -115758700 + L2 LINE L2 3191 3309 -4 2241 122 0 0 chr6 73521134 73521438 -115758116 + AluSx SINE Alu 2 305 -7 1292 201 50 21 chr6 73521440 73521779 -115757775 + MER65C LTR ERV1 1 349 -112 363 233 74 108 chr6 73521924 73522276 -115757278 - MLT2C1 LTR ERVL -14 383 44 * 501 165 0 10 chr6 73522188 73522285 -115757269 - MLT1E3 LTR MaLR -473 151 56 399 320 8 8 chr6 73522293 73522421 -115757133 - MLT2F LTR ERVL -517 146 19 1066 155 5 0 chr6 73522438 73522631 -115756923 + L1PBa LINE L1 1 194 -6669 237 226 0 0 chr6 73522631 73522684 -115756870 + L1PBa LINE L1 995 1047 -5816 6793 118 31 8 chr6 73522685 73523923 -115755631 + L1PBa LINE L1 1092 2505 -4358 1527 130 0 13 chr6 73523989 73524220 -115755334 + AluSq SINE Alu 74 301 -12 1230 114 0 0 chr6 73524220 73524404 -115755150 + L1PB1 LINE L1 5964 6147 -4 23 33 0 0 chr6 73524411 73524441 -115755113 + AT_rich Low_complexity Low_complexity 1 30 0 243 374 65 0 chr6 73524510 73524617 -115754937 - L2 LINE L2 -56 3216 3103 22 35 0 0 chr6 73524670 73524699 -115754855 + AT_rich Low_complexity Low_complexity 1 29 0 1823 141 27 51 chr6 73524815 73525185 -115754369 + THE1C LTR MaLR 15 375 0 208 390 16 0 chr6 73525275 73525398 -115754156 - MIR3 SINE MIR -6 202 78 40 73 0 0 chr6 73525731 73525813 -115753741 + AT_rich Low_complexity Low_complexity 1 82 0 335 156 50 44 chr6 73526404 73526564 -115752990 + (TA)n Simple_repeat Simple_repeat 1 161 0 2192 109 0 3 chr6 73526633 73526927 -115752627 - AluSx SINE Alu -19 293 1 835 305 33 44 chr6 73527488 73528001 -115751553 + MLT1H LTR MaLR 1 549 0 6021 75 8 281 chr6 73530255 73532193 -115747361 + SVA Other Other 13 1433 0 749 233 179 54 chr6 73532443 73532868 -115746686 - MLT1D LTR MaLR -27 478 1 2190 127 0 0 chr6 73533008 73533316 -115746238 - AluY SINE Alu -3 308 1 28992 93 6 5 chr6 73533912 73540072 -115739482 + L1PA6 LINE L1 11 6178 0 332 248 21 71 chr6 73541095 73541236 -115738318 + L1ME3A LINE L1 5106 5239 -907 415 70 18 0 chr6 73541272 73541329 -115738225 + MADE1 DNA Mariner 1 58 -22 611 300 103 16 chr6 73541343 73541827 -115737727 + L1ME3A LINE L1 5416 5941 -229 434 319 119 44 chr6 73542229 73542640 -115736914 + L2 LINE L2 2088 2529 -785 261 0 0 0 chr6 73542731 73542760 -115736794 + (TG)n Simple_repeat Simple_repeat 2 30 0 189 195 0 0 chr6 73542760 73542801 -115736753 + (TA)n Simple_repeat Simple_repeat 1 41 0 234 343 37 67 chr6 73543802 73543848 -115735706 + MIR SINE MIR 16 62 -200 3048 123 25 8 chr6 73543848 73544336 -115735218 - L1PA16 LINE L1 -2 6164 5669 234 343 37 67 chr6 73544336 73544423 -115735131 + MIR SINE MIR 62 145 -117 241 319 7 72 chr6 73544451 73544551 -115735003 + L1M4 LINE L1 3526 3616 -2530 2367 193 39 60 chr6 73544551 73544770 -115734784 - MER68 LTR ERV1 0 562 340 1698 153 17 36 chr6 73544770 73545071 -115734483 - AluSx SINE Alu -17 295 1 2367 193 39 60 chr6 73545071 73545421 -115734133 - MER68 LTR ERV1 -222 340 5 241 319 7 72 chr6 73545421 73545458 -115734096 + L1M4 LINE L1 3616 3654 -2492 451 303 0 15 chr6 73545523 73545655 -115733899 + MIR SINE MIR 108 237 -25 382 273 8 8 chr6 73545721 73545849 -115733705 + L1M4 LINE L1 3694 3821 -2325 391 263 151 50 chr6 73545881 73546318 -115733236 + L1M4 LINE L1 3897 4377 -1769 249 294 128 25 chr6 73546465 73546700 -115732854 + L1M4 LINE L1 4586 4844 -1302 1510 170 22 29 chr6 73547132 73547409 -115732145 + AluJo SINE Alu 11 285 -27 209 125 0 42 chr6 73547409 73547457 -115732097 + (GGGGA)n Simple_repeat Simple_repeat 3 48 0 224 57 0 29 chr6 73547471 73547506 -115732048 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1394 212 0 0 chr6 73547506 73547780 -115731774 - L1 LINE L1 -1241 4905 4632 327 89 0 0 chr6 73547782 73547827 -115731727 - MADE1 DNA Mariner -35 45 1 2075 119 33 0 chr6 73549221 73549523 -115730031 - AluSq SINE Alu -1 312 1 21 36 0 0 chr6 73549567 73549595 -115729959 + AT_rich Low_complexity Low_complexity 1 28 0 210 222 0 0 chr6 73549704 73549758 -115729796 + GA-rich Low_complexity Low_complexity 5 58 0 21 36 0 0 chr6 73550026 73550054 -115729500 + AT_rich Low_complexity Low_complexity 1 28 0 239 0 32 0 chr6 73551178 73551209 -115728345 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 581 252 59 0 chr6 73551209 73551344 -115728210 - AluSg/x SINE Alu -33 277 135 2643 104 8 11 chr6 73553162 73553538 -115726016 + THE1C LTR MaLR 1 375 0 1536 210 28 19 chr6 73554283 73554645 -115724909 + MLT1A1 LTR MaLR 1 365 0 531 309 75 28 chr6 73554920 73555240 -115724314 + LTR16C LTR ERVL 156 490 -1 193 211 113 14 chr6 73555420 73555491 -115724063 + MIR3 SINE MIR 101 178 -30 29 47 0 0 chr6 73556154 73556197 -115723357 + AT_rich Low_complexity Low_complexity 1 43 0 1529 218 10 51 chr6 73556563 73556953 -115722601 - MLT1A2 LTR MaLR 0 374 1 3391 242 106 55 chr6 73556959 73558256 -115721298 - MLT1A2-int LTR MaLR -7 1364 2 1197 237 89 80 chr6 73558257 73558429 -115721125 - MLT2B1 LTR ERVL 0 520 351 1436 111 0 9 chr6 73558429 73558655 -115720899 + L1MA2 LINE L1 6079 6302 -2 1197 237 89 80 chr6 73558655 73558996 -115720558 - MLT2B1 LTR ERVL -169 351 2 2220 122 0 3 chr6 73560679 73560990 -115718564 - AluSq SINE Alu -3 310 1 7098 184 13 6 chr6 73560993 73562765 -115716789 - L1P5 LINE L1 -545 5606 3818 1825 160 3 3 chr6 73562939 73563226 -115716328 - AluSx SINE Alu -14 298 12 1990 150 16 0 chr6 73563334 73563641 -115715913 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 73564695 73564717 -115714837 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 73564936 73564957 -115714597 + AT_rich Low_complexity Low_complexity 1 21 0 272 224 30 15 chr6 73566649 73566716 -115712838 + MIR3 SINE MIR 102 169 -39 380 262 65 19 chr6 73567359 73567466 -115712088 + MIR SINE MIR 12 123 -139 291 184 0 0 chr6 73567471 73567520 -115712034 + MER45 DNA AcHobo 1533 1581 0 24 0 0 0 chr6 73569084 73569108 -115710446 + AT_rich Low_complexity Low_complexity 1 24 0 2237 93 0 17 chr6 73569200 73569501 -115710053 + AluY SINE Alu 1 296 -15 270 188 0 0 chr6 73569566 73569614 -115709940 - MIR SINE MIR -31 231 184 1180 306 43 12 chr6 73569735 73570150 -115709404 + L2 LINE L2 2010 2437 -877 2013 149 76 15 chr6 73570150 73570493 -115709061 - THE1B LTR MaLR 0 364 1 11290 102 4 2 chr6 73570493 73572040 -115707514 - THE1B-int LTR MaLR 0 1580 31 532 287 40 20 chr6 73572090 73572156 -115707398 - THE1B LTR MaLR -1 374 311 189 0 0 0 chr6 73572156 73572177 -115707377 + (A)n Simple_repeat Simple_repeat 1 21 0 532 287 40 20 chr6 73572177 73572365 -115707189 - THE1B LTR MaLR -64 311 115 426 296 38 69 chr6 73572470 73572761 -115706793 + MLT1H LTR MaLR 268 549 0 256 308 54 31 chr6 73572762 73572892 -115706662 - MLT1L LTR MaLR -361 254 122 6087 74 8 282 chr6 73575015 73576907 -115702647 + SVA Other Other 13 1386 0 883 233 179 54 chr6 73577204 73577629 -115701925 - MLT1D LTR MaLR -27 478 1 2168 119 0 0 chr6 73577782 73578077 -115701477 - AluY SINE Alu -16 295 1 12759 142 19 19 chr6 73578664 73580829 -115698725 + L1P LINE L1 2 2164 -3982 10201 105 66 0 chr6 73580833 73582315 -115697239 + THE1A-int LTR MaLR 1 1580 0 2545 107 3 0 chr6 73582315 73582669 -115696885 + THE1A LTR MaLR 1 355 0 3313 148 4 30 chr6 73585470 73586032 -115693522 + MER44D DNA MER2_type 1 602 -3 23 78 0 0 chr6 73587008 73587059 -115692495 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr6 73587330 73587352 -115692202 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr6 73587762 73587789 -115691765 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 203 53 53 26 chr6 73587829 73587867 -115691687 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3173 133 4 4 chr6 73587876 73588373 -115691181 + LOR1a LTR ERV1 1 497 0 2344 109 3 0 chr6 73588689 73589024 -115690530 - AluSp SINE Alu 0 336 1 26 50 0 0 chr6 73589428 73589468 -115690086 + AT_rich Low_complexity Low_complexity 1 40 0 1378 162 58 52 chr6 73589524 73590044 -115689510 + LTR4 LTR ERV1 27 596 0 26 0 0 0 chr6 73590633 73590659 -115688895 + AT_rich Low_complexity Low_complexity 1 26 0 420 273 53 90 chr6 73591076 73591431 -115688123 - L1MC4a LINE L1 -1906 5902 5561 26 0 0 0 chr6 73591815 73591841 -115687713 + AT_rich Low_complexity Low_complexity 1 26 0 919 168 45 59 chr6 73592013 73592233 -115687321 - MLT1A1 LTR MaLR 0 365 149 360 0 0 0 chr6 73592233 73592273 -115687281 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1419 212 30 4 chr6 73592290 73592554 -115687000 - AluJo SINE Alu -41 271 1 679 181 12 38 chr6 73592555 73592715 -115686839 - MLT1A1 LTR MaLR -209 156 1 1687 148 70 7 chr6 73594920 73595204 -115684350 - AluSx SINE Alu -10 302 1 532 272 89 30 chr6 73596583 73596785 -115682769 - MIR SINE MIR -5 257 44 331 257 103 15 chr6 73597289 73597425 -115682129 + MIR SINE MIR 112 259 -3 23 0 0 0 chr6 73597808 73597831 -115681723 + AT_rich Low_complexity Low_complexity 1 23 0 273 253 12 24 chr6 73597842 73597925 -115681629 + MIR SINE MIR 33 114 -148 395 158 150 0 chr6 73598731 73598851 -115680703 + LTR37A LTR ERV1 286 423 -3 202 393 44 22 chr6 73599205 73599340 -115680214 - L2 LINE L2 -194 3078 2941 351 0 0 0 chr6 73600032 73600071 -115679483 + (TG)n Simple_repeat Simple_repeat 2 40 0 1289 55 0 0 chr6 73600714 73600877 -115678677 - L1PA4 LINE L1 -3 6152 5990 582 238 134 64 chr6 73601409 73601813 -115677741 + L1MC4a LINE L1 5843 6274 -1534 600 263 80 64 chr6 73601856 73602183 -115677371 + L1MC4 LINE L1 7256 7587 -455 1682 95 0 0 chr6 73602473 73602684 -115676870 - AluSc SINE Alu -26 283 73 446 191 44 73 chr6 73602763 73603775 -115675779 - SVA Other Other -798 588 457 * 572 88 12 0 chr6 73603768 73603848 -115675706 - AluSc SINE Alu -225 84 4 210 297 14 0 chr6 73605736 73605810 -115673744 - MIR SINE MIR -167 95 21 324 256 0 11 chr6 73606407 73606497 -115673057 - L1M1 LINE L1 -3947 3618 3530 22801 86 7 6 chr6 73606529 73610792 -115668762 - L1PA7 LINE L1 -1 6153 1891 682 273 33 7 chr6 73610801 73611101 -115668453 + L1MC4 LINE L1 7611 7918 -124 835 335 51 25 chr6 73611136 73611305 -115668249 + HERVL LTR ERVL 4136 4299 -1355 1805 176 45 114 chr6 73611305 73611857 -115667697 - MER67D LTR ERV1 0 514 1 835 335 51 25 chr6 73611857 73612198 -115667356 + HERVL LTR ERVL 4299 4659 -995 1424 196 136 14 chr6 73612438 73612791 -115666763 - MSTD LTR MaLR 0 396 1 383 379 43 13 chr6 73613578 73613810 -115665744 + LTR16C LTR ERVL 162 400 -91 347 324 28 34 chr6 73613896 73614075 -115665479 + MIR SINE MIR 85 262 0 186 294 114 69 chr6 73614343 73614588 -115664966 - L2 LINE L2 -1704 1610 1355 25 0 0 0 chr6 73615264 73615289 -115664265 + AT_rich Low_complexity Low_complexity 1 25 0 3339 260 50 45 chr6 73615427 73616845 -115662709 + L1MEc LINE L1 36 1465 -4931 2318 103 0 0 chr6 73616845 73617146 -115662408 + AluSg SINE Alu 1 301 -9 3339 260 50 45 chr6 73617146 73617376 -115662178 + L1MEc LINE L1 1465 1692 -4704 609 253 29 0 chr6 73617376 73617550 -115662004 + L1M4 LINE L1 4712 4890 -1256 219 414 11 0 chr6 73618330 73618417 -115661137 - L2 LINE L2 -2889 425 338 269 120 0 0 chr6 73618807 73618857 -115660697 - AluSc SINE Alu -3 296 247 423 160 64 0 chr6 73619337 73619431 -115660123 + MER53 DNA DNA 1 100 -89 1671 181 3 26 chr6 73619562 73619872 -115659682 + AluJb SINE Alu 1 303 -9 423 269 156 30 chr6 73620207 73620429 -115659125 - MIR SINE MIR -2 260 19 1926 88 26 7 chr6 73620681 73620954 -115658600 - L1PA10 LINE L1 -4 6164 5887 183 156 0 0 chr6 73621525 73621557 -115657997 + (CATATA)n Simple_repeat Simple_repeat 1 32 0 1393 67 11 0 chr6 73621838 73622017 -115657537 + AluY SINE Alu 1 181 -130 896 91 8 0 chr6 73622118 73622250 -115657304 + (GAAA)n Simple_repeat Simple_repeat 4 136 0 2230 74 0 13 chr6 73623697 73623995 -115655559 + AluY SINE Alu 1 294 -17 2406 68 3 6 chr6 73624361 73624672 -115654882 + AluY SINE Alu 1 310 -1 355 143 91 0 chr6 73624858 73624935 -115654619 - MLT1D LTR MaLR -2 503 420 1700 121 76 9 chr6 73625036 73625351 -115654203 - MER50 LTR ERV1 -391 343 8 2379 66 3 3 chr6 73626546 73626847 -115652707 + AluY SINE Alu 1 301 -10 216 0 0 0 chr6 73626925 73626949 -115652605 + (CA)n Simple_repeat Simple_repeat 1 24 0 202 341 71 24 chr6 73627032 73627117 -115652437 + MIR SINE MIR 59 147 -61 408 143 0 0 chr6 73627413 73627476 -115652078 + AluSc SINE Alu 230 292 -17 2283 125 0 3 chr6 73627530 73627842 -115651712 + AluSx SINE Alu 1 311 -1 25 0 0 0 chr6 73629863 73629888 -115649666 + AT_rich Low_complexity Low_complexity 1 25 0 510 268 40 71 chr6 73629888 73630086 -115649468 - MIR SINE MIR -19 243 52 298 250 15 29 chr6 73630091 73630159 -115649395 - MIR SINE MIR -165 97 31 252 0 0 0 chr6 73630307 73630335 -115649219 + (TG)n Simple_repeat Simple_repeat 1 28 0 325 220 340 7 chr6 73631046 73631187 -115648367 - MER5A DNA MER1_type 0 189 2 1345 266 74 5 chr6 73632013 73632445 -115647109 + LTR40b LTR ERVL 1 462 0 1631 194 86 19 chr6 73632556 73632927 -115646627 - MSTD LTR MaLR 0 396 1 21 0 0 0 chr6 73633046 73633067 -115646487 + AT_rich Low_complexity Low_complexity 1 21 0 187 140 40 0 chr6 73633300 73633350 -115646204 + (TA)n Simple_repeat Simple_repeat 2 53 0 2264 93 0 3 chr6 73634670 73634982 -115644572 - AluY SINE Alu 0 311 1 228 198 8 41 chr6 73635239 73635360 -115644194 + (TA)n Simple_repeat Simple_repeat 1 117 0 247 229 60 0 chr6 73635375 73635458 -115644096 + MER20B DNA MER1_type 686 773 -10 1485 255 30 39 chr6 73636089 73636649 -115642905 - L1ME1 LINE L1 -12 6154 5600 851 179 17 28 chr6 73636887 73637066 -115642488 - MLT1D LTR MaLR -328 177 1 690 282 108 59 chr6 73638180 73638622 -115640932 + L2 LINE L2 2701 3175 -138 252 86 0 0 chr6 73638622 73638657 -115640897 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 690 282 108 59 chr6 73638657 73638804 -115640750 + L2 LINE L2 3175 3313 0 338 385 14 0 chr6 73638831 73638974 -115640580 - MIR SINE MIR -69 193 49 21 36 0 0 chr6 73639013 73639041 -115640513 + AT_rich Low_complexity Low_complexity 1 28 0 1666 88 5 0 chr6 73639217 73639434 -115640120 - AluSp SINE Alu -13 300 83 288 0 0 0 chr6 73640150 73640182 -115639372 + (CA)n Simple_repeat Simple_repeat 2 33 0 2255 167 21 35 chr6 73641139 73641178 -115638376 - MSTB LTR MaLR 0 426 388 1672 93 0 0 chr6 73641178 73641394 -115638160 + AluSg/x SINE Alu 89 304 -8 2255 167 21 35 chr6 73641394 73641786 -115637768 - MSTB LTR MaLR -38 388 1 2292 89 0 3 chr6 73642104 73642443 -115637111 - AluSp SINE Alu 0 338 1 799 164 124 144 chr6 73642604 73642952 -115636602 + MER7A DNA MER2_type 1 339 -7 211 213 21 0 chr6 73642968 73643015 -115636539 + CT-rich Low_complexity Low_complexity 2 49 0 181 167 37 0 chr6 73643622 73643676 -115635878 + (TA)n Simple_repeat Simple_repeat 2 57 0 23 54 0 0 chr6 73645145 73645182 -115634372 + AT_rich Low_complexity Low_complexity 1 37 0 211 276 35 17 chr6 73645767 73645825 -115633729 + MIR3 SINE MIR 10 68 -140 266 356 41 7 chr6 73645837 73645983 -115633571 + MIR SINE MIR 106 256 -6 352 239 22 11 chr6 73646133 73646225 -115633329 - LTR67 LTR ERVL -39 518 426 4532 103 119 135 chr6 73646414 73647933 -115631621 - pTR5 LTR ERV1 0 2438 741 288 325 8 16 chr6 73647934 73648060 -115631494 - LTR67 LTR ERVL -423 134 10 186 118 0 0 chr6 73648074 73648108 -115631446 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 228 306 24 12 chr6 73649128 73649213 -115630341 + L2 LINE L2 3184 3269 -3 206 81 27 0 chr6 73649905 73649942 -115629612 + (CA)n Simple_repeat Simple_repeat 1 38 0 401 188 12 0 chr6 73649966 73650051 -115629503 - MLT1J LTR MaLR -25 486 401 1965 134 37 7 chr6 73650241 73650540 -115629014 + AluSx SINE Alu 5 312 0 304 327 54 18 chr6 73650556 73650724 -115628830 - MLT1J LTR MaLR -316 195 22 1743 148 0 11 chr6 73650882 73651160 -115628394 - AluJo SINE Alu -9 303 29 299 44 22 0 chr6 73653741 73653786 -115625768 + (TA)n Simple_repeat Simple_repeat 2 47 0 569 254 45 23 chr6 73654358 73654535 -115625019 + MIR3 SINE MIR 25 205 -3 181 301 36 48 chr6 73654542 73654625 -115624929 - L2 LINE L2 -18 3254 3173 223 244 0 0 chr6 73654769 73654810 -115624744 + polypyrimidine Low_complexity Low_complexity 1 41 0 672 208 14 7 chr6 73654810 73654954 -115624600 - MLT1A1 LTR MaLR -49 316 172 180 379 32 16 chr6 73655430 73655554 -115624000 - L3b LINE CR1 -237 1346 1221 2447 76 3 0 chr6 73656133 73656437 -115623117 - AluSq SINE Alu -8 305 1 724 305 34 4 chr6 73658407 73658669 -115620885 + LTR33 LTR ERVL 2 271 -250 949 112 0 8 chr6 73658691 73658825 -115620729 - AluSq/x SINE Alu -179 133 1 2299 110 0 3 chr6 73658838 73659146 -115620408 - AluSx SINE Alu -5 307 1 614 248 84 23 chr6 73659146 73659360 -115620194 + LTR33 LTR ERVL 255 481 -40 830 264 35 0 chr6 73659816 73660017 -115619537 + MIR SINE MIR 18 225 -37 2363 91 0 3 chr6 73660585 73660894 -115618660 - AluY SINE Alu -3 308 1 1879 120 3 34 chr6 73661077 73661475 -115618079 - AluSx SINE Alu 0 389 1 575 340 15 5 chr6 73661586 73661786 -115617768 - MIR SINE MIR -48 214 13 473 284 0 85 chr6 73661995 73662196 -115617358 + MIR SINE MIR 29 212 -50 1931 171 3 0 chr6 73662574 73662867 -115616687 + AluSx SINE Alu 1 294 -18 621 277 148 28 chr6 73662876 73663201 -115616353 - LTR33 LTR ERVL -58 463 100 526 316 62 36 chr6 73663203 73663510 -115616044 + MLT1L LTR MaLR 205 519 -96 2058 107 20 20 chr6 73663510 73663810 -115615744 - AluSx SINE Alu -12 300 1 1187 228 4 8 chr6 73663867 73664117 -115615437 - MER76 LTR ERV -439 249 1 1090 173 30 0 chr6 73664132 73664334 -115615220 + L1MDa LINE L1 41 248 -6292 * 2017 209 55 64 chr6 73664326 73664835 -115614719 - L1MDa LINE L1 -5923 617 114 2442 73 0 3 chr6 73664835 73665137 -115614417 - AluSc SINE Alu -8 301 1 2017 209 55 64 chr6 73665137 73665250 -115614304 - L1MDa LINE L1 -6426 114 1 850 236 111 1 chr6 73665813 73666151 -115613403 - LTR50 LTR ERVL -1 794 344 462 227 221 0 chr6 73666229 73666383 -115613171 - LTR50 LTR ERVL -573 222 35 225 0 0 0 chr6 73666458 73666483 -115613071 + (TG)n Simple_repeat Simple_repeat 2 26 0 2190 109 36 0 chr6 73666548 73666850 -115612704 + AluSq SINE Alu 1 313 0 362 123 0 31 chr6 73667717 73667782 -115611772 + THE1C LTR MaLR 1 63 -312 815 225 79 29 chr6 73667975 73668215 -115611339 + MER34C LTR ERV1 162 413 -172 382 215 13 28 chr6 73668223 73668363 -115611191 + LTR23-int LTR ERV1 1096 1190 -3681 334 211 20 99 chr6 73668484 73668636 -115610918 + LTR57-int LTR ERVL 1023 1162 -4181 * 652 147 23 0 chr6 73668561 73668690 -115610864 + LTR23-int LTR ERV1 3141 3272 -3059 441 184 0 0 chr6 73668742 73668818 -115610736 + LTR23-int LTR ERV1 3264 3339 -2992 488 192 0 0 chr6 73668881 73668980 -115610574 + LTR23-int LTR ERV1 3355 3453 -2878 1747 194 7 0 chr6 73669132 73669436 -115610118 + AluJb SINE Alu 6 311 -1 591 222 32 5 chr6 73669524 73669740 -115609814 + LTR23-int LTR ERV1 1911 2132 -2991 1680 160 47 7 chr6 73669751 73670051 -115609503 + AluSx SINE Alu 1 312 0 320 321 54 18 chr6 73670066 73670234 -115609320 - MLT1J LTR MaLR -316 195 22 1727 152 0 7 chr6 73670392 73670669 -115608885 - AluJo SINE Alu -9 303 29 332 22 22 0 chr6 73673250 73673295 -115606259 + (TA)n Simple_repeat Simple_repeat 2 47 0 553 238 33 40 chr6 73674484 73674635 -115604919 + MIR SINE MIR 58 207 -55 2457 143 10 3 chr6 73674971 73675356 -115604198 - MLT1B LTR MaLR -2 388 1 1853 129 3 37 chr6 73675522 73675817 -115603737 + AluSx SINE Alu 2 286 -26 592 182 126 57 chr6 73675831 73675990 -115603564 + AluJb SINE Alu 124 293 -19 1355 177 56 53 chr6 73676123 73676462 -115603092 + MER2 DNA MER2_type 1 340 -4 2180 137 0 6 chr6 73676564 73676877 -115602677 - AluSx SINE Alu -1 311 1 1174 165 77 18 chr6 73676877 73676986 -115602568 - L1MDa LINE L1 -3642 2898 2797 1180 207 74 21 chr6 73676986 73677271 -115602283 - AluJb SINE Alu 0 302 3 1531 212 11 0 chr6 73677281 73677564 -115601990 - AluJb SINE Alu -23 289 4 1174 165 77 18 chr6 73677564 73677911 -115601643 - L1MDa LINE L1 -3751 2789 2386 315 217 75 0 chr6 73677939 73678045 -115601509 - L1MDa LINE L1 -4133 2407 2294 543 205 19 51 chr6 73678082 73678238 -115601316 - L1MC1 LINE L1 0 6333 6183 2047 133 3 13 chr6 73678267 73678569 -115600985 + AluSx SINE Alu 1 299 -13 244 292 0 0 chr6 73679586 73679658 -115599896 + HsTC2 DNA Tc2 1663 1734 -164 849 232 134 13 chr6 73679664 73679888 -115599666 - MER45C DNA AcHobo 0 953 703 698 240 62 61 chr6 73679869 73680208 -115599346 - MER45C DNA AcHobo -541 412 20 * 2350 95 0 0 chr6 73680596 73680891 -115598663 - AluSc SINE Alu -14 295 1 2111 135 0 10 chr6 73680903 73681199 -115598355 - AluSx SINE Alu -19 293 1 268 203 0 0 chr6 73681199 73681258 -115598296 - L1MDa LINE L1 -5100 1440 1382 1031 190 92 39 chr6 73681261 73681598 -115597956 - L1MDa LINE L1 -5112 1428 1074 434 188 21 42 chr6 73681751 73681895 -115597659 - LOR1-int LTR ERV1 -3816 4304 4164 308 178 55 53 chr6 73681911 73682063 -115597491 - LOR1-int LTR ERV1 -2617 3714 2997 2121 143 0 0 chr6 73682067 73682375 -115597179 - AluSx SINE Alu -4 308 1 1532 176 0 34 chr6 73682379 73682646 -115596908 - AluJo SINE Alu -16 296 39 2235 113 0 0 chr6 73683391 73683683 -115595871 + AluSq SINE Alu 1 292 -21 501 339 45 52 chr6 73684028 73684432 -115595122 + L2 LINE L2 1763 2163 -1151 1970 128 36 0 chr6 73684489 73684795 -115594759 - AluSx SINE Alu 0 316 1 228 208 42 42 chr6 73686392 73686464 -115593090 + LTR16A1 LTR ERVL 386 457 0 650 198 25 0 chr6 73686780 73686901 -115592653 - FLAM_C SINE Alu -19 124 1 6243 32 4 1 chr6 73687138 73687923 -115591631 - L1PA3 LINE L1 -44 6111 5325 * 7922 30 3 0 chr6 73687921 73688938 -115590616 + L1P LINE L1 2095 3114 -3032 440 240 26 64 chr6 73689041 73689274 -115590280 + HAL1 LINE L1 1928 2151 -356 372 325 0 0 chr6 73689737 73689863 -115589691 - MLT1J LTR MaLR 0 511 386 2152 203 77 16 chr6 73690502 73691318 -115588236 + Charlie1 DNA MER1_type 1864 2757 -4 372 305 92 35 chr6 73692801 73692942 -115586612 - MIR3 SINE MIR -23 185 37 211 269 60 0 chr6 73692965 73693032 -115586522 + MIR SINE MIR 186 256 -6 373 275 256 19 chr6 73693055 73693262 -115586292 + MIR SINE MIR 2 257 -5 1546 152 30 71 chr6 73693748 73694044 -115585510 + AluSx SINE Alu 1 284 -28 308 263 74 0 chr6 73694170 73694265 -115585289 + L1ME4a LINE L1 6017 6118 -3 1885 116 7 51 chr6 73694270 73694609 -115584945 + AluSg SINE Alu 1 326 0 228 245 117 92 chr6 73694616 73694812 -115584742 - L2 LINE L2 0 3313 3113 1963 181 16 8 chr6 73694929 73695316 -115584238 - MLT1B LTR MaLR 0 390 1 298 369 82 5 chr6 73695321 73695516 -115584038 + L2 LINE L2 3104 3313 0 22 35 0 0 chr6 73695945 73695974 -115583580 + AT_rich Low_complexity Low_complexity 1 29 0 536 291 29 0 chr6 73696778 73696953 -115582601 + Charlie8 DNA MER1_type 37 216 -2201 571 207 7 44 chr6 73696991 73697126 -115582428 - MER58B DNA MER1_type -2 339 210 1483 177 68 51 chr6 73697389 73698100 -115581454 - LTR1B LTR ERV1 0 785 1 2095 224 80 18 chr6 73698100 73698653 -115580901 + MLT1E2 LTR MaLR 5 591 -35 1803 220 118 24 chr6 73698706 73699216 -115580338 + MER77 LTR ERV1 41 598 -7 1550 175 34 0 chr6 73699364 73699632 -115579922 - AluJo SINE Alu -35 277 1 219 341 23 0 chr6 73699733 73699821 -115579733 - MIR3 SINE MIR 0 208 119 472 198 17 157 chr6 73700252 73700340 -115579214 + MER97a DNA MER1_type? 1 55 -839 2028 123 3 27 chr6 73700340 73700640 -115578914 + AluSx SINE Alu 1 293 -19 472 198 17 157 chr6 73700640 73700723 -115578831 + MER97a DNA MER1_type? 55 148 -746 22 0 0 0 chr6 73702587 73702609 -115576945 + AT_rich Low_complexity Low_complexity 1 22 0 212 54 54 0 chr6 73702769 73702806 -115576748 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 251 200 157 0 chr6 73703085 73703155 -115576399 - MIR SINE MIR -116 146 66 2123 105 0 48 chr6 73703354 73703668 -115575886 + AluSg SINE Alu 1 299 -11 1115 215 159 17 chr6 73704062 73704415 -115575139 + MER57A LTR ERV1 1 403 0 3255 185 38 58 chr6 73704415 73705281 -115574273 + MER57A-int LTR ERV1 1 849 -6688 441 270 7 20 chr6 73705370 73705522 -115574032 + MER57A-int LTR ERV1 841 990 -4133 815 225 79 29 chr6 73705527 73705767 -115573787 + MER34C LTR ERV1 162 413 -172 382 215 13 28 chr6 73705775 73705915 -115573639 + MER57A-int LTR ERV1 1096 1190 -3681 334 211 20 99 chr6 73706036 73706188 -115573366 + LTR57-int LTR ERVL 1023 1162 -4181 * 671 124 8 234 chr6 73706113 73706370 -115573184 + MER57A-int LTR ERV1 3141 3339 -2992 488 192 0 0 chr6 73706433 73706532 -115573022 + MER57A-int LTR ERV1 3355 3453 -2878 1772 191 7 0 chr6 73706684 73706988 -115572566 + AluJb SINE Alu 6 311 -1 582 213 57 39 chr6 73707076 73707303 -115572251 + MER57A-int LTR ERV1 1911 2132 -4199 2082 149 0 0 chr6 73707303 73707611 -115571943 + AluSx SINE Alu 1 308 -4 582 213 57 39 chr6 73707611 73707761 -115571793 + MER57A-int LTR ERV1 2132 3714 -2617 5015 200 56 87 chr6 73707783 73709139 -115570415 + MER57A-int LTR ERV1 2553 3949 -3494 1730 129 0 4 chr6 73709139 73709379 -115570175 + AluSq SINE Alu 1 239 -74 5015 200 56 87 chr6 73709379 73709621 -115569933 + MER57A-int LTR ERV1 3949 5821 -1622 5803 201 29 40 chr6 73709950 73711285 -115568269 + MER57A-int LTR ERV1 5825 7144 -393 690 181 132 85 chr6 73711285 73711604 -115567950 + LTR54 LTR ERV1 1 387 -111 472 194 0 19 chr6 73711605 73711708 -115567846 + MER57A-int LTR ERV1 7437 7537 0 1726 142 114 26 chr6 73711709 73712061 -115567493 + MER57A LTR ERV1 12 394 -9 2004 131 3 23 chr6 73712073 73712379 -115567175 + AluJb SINE Alu 1 300 -12 299 291 193 28 chr6 73712405 73712618 -115566936 - MIR SINE MIR -7 255 8 551 231 8 0 chr6 73713081 73713211 -115566343 - Charlie8 DNA MER1_type -2215 202 72 829 254 40 5 chr6 73713420 73713644 -115565910 - MIR SINE MIR 0 262 31 335 350 105 0 chr6 73715230 73715373 -115564181 + L1ME LINE L1 5586 5743 -378 2343 94 3 0 chr6 73715447 73715745 -115563809 + AluSx SINE Alu 1 299 -13 1169 164 75 0 chr6 73715879 73716147 -115563407 - L1MA8 LINE L1 -3 6288 6001 322 385 39 10 chr6 73716147 73716355 -115563199 + L2 LINE L2 2626 2839 -475 3493 126 19 95 chr6 73716635 73716808 -115562746 - L1MA8 LINE L1 -6 6285 6100 7900 128 22 4 chr6 73716808 73718084 -115561470 - HSMAR2 DNA Mariner -1 1301 3 3493 126 19 95 chr6 73718084 73718655 -115560899 - L1MA8 LINE L1 -191 6100 5598 264 351 249 20 chr6 73718942 73719437 -115560117 - L2 LINE L2 -637 2677 2297 189 0 0 0 chr6 73719437 73719458 -115560096 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 264 351 249 20 chr6 73719458 73719660 -115559894 - L2 LINE L2 -1017 2297 1820 2091 150 0 6 chr6 73719849 73720162 -115559392 + AluSx SINE Alu 1 311 -1 396 88 0 0 chr6 73720162 73720219 -115559335 + (CATA)n Simple_repeat Simple_repeat 3 59 0 1232 221 28 45 chr6 73720406 73720764 -115558790 + MLT1A1 LTR MaLR 14 365 0 389 335 149 24 chr6 73720972 73721354 -115558200 - L2 LINE L2 -1889 1425 996 206 300 29 0 chr6 73721411 73721481 -115558073 + L2 LINE L2 3201 3272 0 357 24 0 0 chr6 73721910 73721952 -115557602 + (TG)n Simple_repeat Simple_repeat 1 42 0 180 97 0 0 chr6 73721967 73721998 -115557556 + (TA)n Simple_repeat Simple_repeat 2 32 0 26 50 0 0 chr6 73723037 73723077 -115556477 + AT_rich Low_complexity Low_complexity 1 40 0 909 202 96 14 chr6 73723503 73723721 -115555833 - MIR SINE MIR -14 248 13 213 317 24 37 chr6 73728275 73728357 -115551197 + L3 LINE CR1 1122 1202 -375 1013 138 58 0 chr6 73729542 73729716 -115549838 - L1PB4 LINE L1 -2 6154 5971 426 39 0 0 chr6 73729848 73729900 -115549654 + (CA)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr6 73729922 73729945 -115549609 + AT_rich Low_complexity Low_complexity 1 23 0 1047 219 16 16 chr6 73729998 73730064 -115549490 - Charlie1b DNA MER1_type -2505 256 191 2251 90 7 3 chr6 73730064 73730365 -115549189 - AluSx SINE Alu -10 302 1 1047 219 16 16 chr6 73730365 73730554 -115549000 - Charlie1b DNA MER1_type -2569 192 1 251 279 87 19 chr6 73730615 73730719 -115548835 + MIR3 SINE MIR 95 205 -3 3257 184 15 34 chr6 73730740 73731119 -115548435 + L1MA4A LINE L1 2667 3052 -3094 2057 141 7 3 chr6 73731119 73731425 -115548129 + AluSc SINE Alu 1 307 -2 3257 184 15 34 chr6 73731425 73731891 -115547663 + L1MA4A LINE L1 3052 3496 -2650 1406 116 49 0 chr6 73731891 73732115 -115547439 - LTR12 LTR ERV1 0 714 480 342 208 30 20 chr6 73732116 73732217 -115547337 - LTR30 LTR ERV1 -80 642 541 6269 121 52 29 chr6 73732218 73733922 -115545632 - pTR5 LTR ERV1 0 8399 504 263 213 0 0 chr6 73733918 73733979 -115545575 - HERV17 LTR ERV1 -835 7564 7504 * 455 180 58 10 chr6 73733980 73734164 -115545390 - HERV17 LTR ERV1 -5900 996 743 34855 90 12 6 chr6 73734165 73739332 -115540222 - HERV17 LTR ERV1 -1935 503 17 297 188 39 30 chr6 73739332 73739434 -115540120 - LTR30 LTR ERV1 -73 721 556 521 99 279 9 chr6 73739434 73739545 -115540009 - pTR5 LTR ERV1 -408 2030 1890 * 624 234 64 6 chr6 73739542 73739713 -115539841 + L1MA4A LINE L1 3492 3672 -2474 195 42 0 0 chr6 73739713 73739737 -115539817 + (GAAAA)n Simple_repeat Simple_repeat 4 27 0 496 239 6 17 chr6 73739766 73739946 -115539608 + GA-rich Low_complexity Low_complexity 3 180 0 1832 154 65 20 chr6 73739972 73741150 -115538404 + L1MA4A LINE L1 3691 4815 -1488 2077 125 3 23 chr6 73741150 73741455 -115538099 + AluSg SINE Alu 1 299 -11 1832 154 65 20 chr6 73741455 73742685 -115536869 + L1MA4A LINE L1 4815 6302 -1 387 0 0 0 chr6 73742813 73742856 -115536698 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 35 0 0 chr6 73742856 73742885 -115536669 + AT_rich Low_complexity Low_complexity 1 29 0 1634 131 112 15 chr6 73742926 73743193 -115536361 - AluSx SINE Alu -19 293 1 2359 99 0 3 chr6 73743212 73743516 -115536038 - AluSg SINE Alu -7 303 1 1195 130 5 74 chr6 73743558 73743773 -115535781 + AluSg/x SINE Alu 83 282 -28 189 0 0 0 chr6 73743779 73743800 -115535754 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1433 177 4 8 chr6 73743819 73744056 -115535498 + AluJb SINE Alu 6 241 -71 4675 76 0 19 chr6 73744114 73744760 -115534794 - L1PA13 LINE L1 0 6163 5530 1913 156 0 7 chr6 73744910 73745205 -115534349 + AluSx SINE Alu 1 293 -19 1087 122 11 28 chr6 73745312 73745492 -115534062 - AluSq SINE Alu -8 305 129 2112 81 3 50 chr6 73745496 73745820 -115533734 - AluSx SINE Alu 0 310 1 624 276 72 47 chr6 73745820 73746309 -115533245 - HAL1 LINE L1 -203 2304 1804 2139 86 52 0 chr6 73746316 73746607 -115532947 - AluSc SINE Alu -3 306 1 1048 127 5 81 chr6 73746723 73746944 -115532610 + MER2 DNA MER2_type 1 204 -141 341 267 13 0 chr6 73747034 73747109 -115532445 + MER2 DNA MER2_type 269 344 -1 228 219 0 0 chr6 73747150 73747232 -115532322 + A-rich Low_complexity Low_complexity 1 82 0 2252 94 3 7 chr6 73748818 73749117 -115530437 - AluSp SINE Alu -15 298 1 638 257 96 71 chr6 73749286 73749620 -115529934 - L2 LINE L2 0 3313 2989 2134 111 20 3 chr6 73749620 73749918 -115529636 - AluSx SINE Alu -9 303 1 638 257 96 71 chr6 73749918 73750124 -115529430 - L2 LINE L2 -324 2989 2600 2178 122 3 3 chr6 73750237 73750549 -115529005 - AluSx SINE Alu 0 312 1 2165 109 3 0 chr6 73750561 73750855 -115528699 - AluSx SINE Alu -17 295 1 765 242 75 35 chr6 73751533 73751760 -115527794 + MIR SINE MIR 9 244 -18 4238 136 91 139 chr6 73752390 73753998 -115525556 + pTR5 LTR ERV1 743 2438 0 2229 85 7 10 chr6 73754665 73754959 -115524595 - AluSp SINE Alu -19 294 2 1738 159 89 19 chr6 73755379 73755749 -115523805 - MER61B LTR ERV1 -29 396 1 250 298 32 73 chr6 73755782 73755906 -115523648 + L2 LINE L2 3192 3310 -3 1162 194 41 41 chr6 73756354 73756522 -115523032 - AluSx SINE Alu -16 296 126 7587 26 3 0 chr6 73756522 73757626 -115521928 - L1PA3 LINE L1 -6 6149 5045 1162 194 41 41 chr6 73757626 73757751 -115521803 - AluSx SINE Alu -185 127 3 2140 99 18 0 chr6 73757950 73758233 -115521321 - AluSx SINE Alu -24 288 1 291 135 0 0 chr6 73758399 73758462 -115521092 + Alu SINE Alu 251 300 -2 346 244 0 24 chr6 73758667 73758794 -115520760 + CT-rich Low_complexity Low_complexity 4 127 0 1697 115 0 0 chr6 73759465 73759691 -115519863 - AluSx SINE Alu -86 226 1 198 0 0 0 chr6 73759742 73759764 -115519790 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 7564 205 64 15 chr6 73759898 73762344 -115517210 - L1 LINE L1 -2689 4519 1298 261 0 0 0 chr6 73762344 73762373 -115517181 + (TG)n Simple_repeat Simple_repeat 2 30 0 7564 205 64 15 chr6 73762373 73763237 -115516317 - L1 LINE L1 -5910 1298 478 374 294 86 58 chr6 73763460 73763786 -115515768 + LTR67 LTR ERVL 197 531 -26 1787 220 100 25 chr6 73765144 73765735 -115513819 + MLT1E2 LTR MaLR 1 626 0 1397 266 86 28 chr6 73765738 73766380 -115513174 + HAL1 LINE L1 1473 2151 -356 724 268 91 93 chr6 73766843 73767350 -115512204 - MLT1J LTR MaLR 0 511 6 318 341 62 17 chr6 73767351 73767530 -115512024 - L1M4 LINE L1 -1225 4921 4735 481 155 0 72 chr6 73767530 73767627 -115511927 + MER21B LTR ERV1 1 90 -773 2480 222 108 14 chr6 73767659 73768281 -115511273 + MER21B LTR ERV1 44 723 -140 473 309 99 10 chr6 73768273 73768474 -115511080 + MER21B LTR ERV1 179 397 -466 * 565 236 114 0 chr6 73768465 73768605 -115510949 - MER21B LTR ERV1 -664 199 44 274 206 151 41 chr6 73768610 73768683 -115510871 + MER21B LTR ERV1 723 803 -60 387 240 147 34 chr6 73768738 73768942 -115510612 - L1M4 LINE L1 -1433 4713 4487 252 59 0 0 chr6 73769052 73769086 -115510468 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 1993 104 0 0 chr6 73769716 73769975 -115509579 + AluSx SINE Alu 40 298 -14 776 151 0 43 chr6 73770257 73770396 -115509158 - FLAM_C SINE Alu 0 133 1 1358 223 52 45 chr6 73770858 73771239 -115508315 + MLT1E3 LTR MaLR 3 386 -238 605 268 24 6 chr6 73771246 73771414 -115508140 - MLT1E2 LTR MaLR -47 579 409 265 56 444 0 chr6 73771599 73771653 -115507901 + MADE1 DNA Mariner 3 80 0 2064 133 23 0 chr6 73772075 73772376 -115507178 + AluSx SINE Alu 1 308 -4 1783 201 19 14 chr6 73772474 73772837 -115506717 + MLT1A1 LTR MaLR 1 365 0 309 68 0 0 chr6 73772879 73772923 -115506631 + (TG)n Simple_repeat Simple_repeat 1 44 0 366 91 0 0 chr6 73772923 73772978 -115506576 + (GA)n Simple_repeat Simple_repeat 2 56 0 1799 164 7 4 chr6 73772982 73773263 -115506291 - AluSx SINE Alu -30 282 1 1462 204 12 0 chr6 73773887 73774142 -115505412 + AluJo SINE Alu 1 258 -54 255 61 0 0 chr6 73774142 73774175 -115505379 + (TC)n Simple_repeat Simple_repeat 2 34 0 330 45 0 0 chr6 73774175 73774219 -115505335 + (CA)n Simple_repeat Simple_repeat 1 44 0 4271 165 38 6 chr6 73775118 73776580 -115502974 + L1MA4A LINE L1 4608 6113 -190 997 303 151 15 chr6 73778656 73779257 -115500297 + L2 LINE L2 1249 1931 -1383 347 262 109 14 chr6 73779273 73779548 -115500006 - L1M4 LINE L1 -2863 4702 4402 248 389 20 0 chr6 73779910 73780059 -115499495 - MIR SINE MIR -58 204 53 220 278 0 0 chr6 73780320 73780374 -115499180 + (CATAT)n Simple_repeat Simple_repeat 4 57 0 216 0 0 0 chr6 73780623 73780647 -115498907 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 10134 54 6 79 chr6 73780647 73782122 -115497432 - SVA Other Other -17 1369 2 32 0 0 0 chr6 73782252 73782284 -115497270 + AT_rich Low_complexity Low_complexity 1 32 0 8981 223 47 31 chr6 73782319 73782671 -115496883 - L1PB3 LINE L1 -1 7113 6768 369 0 0 0 chr6 73782671 73782712 -115496842 + (TG)n Simple_repeat Simple_repeat 2 42 0 8981 223 47 31 chr6 73782712 73785013 -115494541 - L1PB3 LINE L1 -346 6768 4135 192 40 0 0 chr6 73785013 73785038 -115494516 + (TGG)n Simple_repeat Simple_repeat 1 25 0 8981 223 47 31 chr6 73785038 73786476 -115493078 - L1PB3 LINE L1 -2979 4135 2722 4342 252 62 13 chr6 73786473 73786555 -115492999 - L1PB3 LINE L1 -4599 2497 2420 * 422 48 0 16 chr6 73786555 73786617 -115492937 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 4342 252 62 13 chr6 73786617 73787774 -115491780 - L1PB3 LINE L1 -4676 2420 1197 2016 255 29 32 chr6 73788000 73788553 -115491001 - L1PB3 LINE L1 -5885 1211 661 2138 261 62 33 chr6 73788624 73789825 -115489729 - L1M4 LINE L1 -4388 3177 2011 1249 308 44 39 chr6 73789930 73790502 -115489052 - L1PB3 LINE L1 -6449 581 7 1943 208 40 14 chr6 73791183 73791679 -115487875 + L1MA8 LINE L1 5783 6291 0 232 211 35 0 chr6 73791682 73791739 -115487815 + GA-rich Low_complexity Low_complexity 4 62 0 233 293 17 0 chr6 73792158 73792216 -115487338 + L2 LINE L2 3251 3309 -4 682 169 31 15 chr6 73792231 73792361 -115487193 - MLT2A2 LTR ERVL -1 452 321 5068 215 38 15 chr6 73792476 73793613 -115485941 + L1PA15 LINE L1 3191 4300 -3265 5304 147 12 3 chr6 73793613 73795201 -115484353 + L1PA15 LINE L1 5949 7576 -8 5068 215 38 15 chr6 73795201 73795791 -115483763 + L1PA15 LINE L1 4300 5595 -1970 213 367 37 9 chr6 73796179 73796288 -115483266 + L2 LINE L2 2715 2826 -488 198 71 0 0 chr6 73796297 73796325 -115483229 + (CA)n Simple_repeat Simple_repeat 1 28 0 227 316 18 0 chr6 73796432 73796489 -115483065 + L2 LINE L2 3154 3211 -61 24 0 0 0 chr6 73796584 73796608 -115482946 + AT_rich Low_complexity Low_complexity 1 24 0 198 71 0 0 chr6 73797137 73797165 -115482389 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr6 73797540 73797568 -115481986 + AT_rich Low_complexity Low_complexity 1 28 0 2138 98 28 3 chr6 73797574 73797860 -115481694 + AluSq SINE Alu 6 298 -15 307 200 0 0 chr6 73798016 73798076 -115481478 + MER53 DNA DNA 129 188 -1 26 50 0 0 chr6 73798564 73798604 -115480950 + AT_rich Low_complexity Low_complexity 1 40 0 337 257 111 0 chr6 73799340 73799483 -115480071 + MIR SINE MIR 45 201 -61 218 293 151 9 chr6 73799737 73799843 -115479711 - MIR SINE MIR -14 248 128 236 284 12 0 chr6 73800269 73800350 -115479204 + (TA)n Simple_repeat Simple_repeat 2 83 0 29 0 0 0 chr6 73800773 73800802 -115478752 + AT_rich Low_complexity Low_complexity 1 29 0 264 388 57 29 chr6 73800802 73801137 -115478417 + L2 LINE L2 2707 3044 -228 352 275 127 21 chr6 73801686 73801828 -115477726 - MIR SINE MIR -77 185 29 1697 208 75 10 chr6 73802751 73803150 -115476404 - MSTB LTR MaLR -1 425 1 558 275 6 6 chr6 73803656 73803816 -115475738 + MER8 DNA MER2_type 1 160 -79 261 0 0 0 chr6 73803882 73803911 -115475643 + (CA)n Simple_repeat Simple_repeat 2 30 0 232 151 0 38 chr6 73803967 73804020 -115475534 + L1MC4 LINE L1 6653 6703 -1339 * 268 214 0 82 chr6 73803990 73804088 -115475466 - L1MC4 LINE L1 -1339 6703 6614 1832 231 14 10 chr6 73805355 73805771 -115473783 + L1MA9 LINE L1 5742 6159 -153 191 284 54 0 chr6 73806216 73806290 -115473264 - MIR SINE MIR -108 154 77 243 259 17 0 chr6 73806855 73806913 -115472641 - L2 LINE L2 -5 3308 3250 1446 272 42 20 chr6 73807815 73808359 -115471195 - L1ME1 LINE L1 -3 6163 5608 503 299 15 54 chr6 73808337 73808541 -115471013 + L1MDa LINE L1 15 210 -6330 * 246 32 0 0 chr6 73808690 73808718 -115470836 + (TG)n Simple_repeat Simple_repeat 1 59 0 246 32 0 0 chr6 73808718 73808749 -115470805 + (TG)n Simple_repeat Simple_repeat 2 32 0 23 33 0 0 chr6 73808923 73808953 -115470601 + AT_rich Low_complexity Low_complexity 1 30 0 1887 46 50 4 chr6 73809516 73809757 -115469797 + AluY SINE Alu 1 252 -59 514 194 0 0 chr6 73809870 73809968 -115469586 - FLAM_A SINE Alu -4 138 41 459 326 76 10 chr6 73809988 73810439 -115469115 + L1MDa LINE L1 1105 1606 -4934 335 277 0 0 chr6 73810537 73810638 -115468916 + L1P4 LINE L1 5513 5613 -555 21 36 0 0 chr6 73811637 73811665 -115467889 + AT_rich Low_complexity Low_complexity 1 28 0 539 40 0 27 chr6 73813269 73813344 -115466210 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 22 80 0 0 chr6 73815752 73815802 -115463752 + AT_rich Low_complexity Low_complexity 1 50 0 3043 309 32 37 chr6 73816252 73817895 -115461659 + L1PBa LINE L1 3 1636 -5227 * 3507 214 59 18 chr6 73817864 73819609 -115459945 + L1MA4 LINE L1 1 2570 -3633 611 99 11 0 chr6 73820297 73820388 -115459166 + L1MA2 LINE L1 6211 6302 -2 24 0 0 0 chr6 73820389 73820413 -115459141 + AT_rich Low_complexity Low_complexity 1 24 0 4094 179 33 21 chr6 73820461 73822025 -115457529 - L1MA8 LINE L1 -5 6286 4694 2532 119 31 31 chr6 73822044 73822491 -115457063 - L1MA1 LINE L1 -4 6298 5852 5913 9 3 10 chr6 73822533 73822549 -115457005 - L1HS LINE L1 -3 6152 6137 333 75 30 15 chr6 73822549 73822616 -115456938 + (TTTTA)n Simple_repeat Simple_repeat 4 71 0 5913 9 3 10 chr6 73822616 73823284 -115456270 - L1HS LINE L1 -18 6137 5473 1576 258 49 0 chr6 73823263 73823729 -115455825 - L1MA8 LINE L1 -3208 2938 2450 * 2365 228 97 93 chr6 73823830 73824770 -115454784 - L1MC3 LINE L1 -1341 7119 6176 4467 177 12 14 chr6 73824772 73826831 -115452723 + L1MA4 LINE L1 4151 6351 -6 883 213 80 4 chr6 73826831 73827056 -115452498 - L1MC3 LINE L1 -2036 6167 5926 391 235 25 0 chr6 73827075 73827194 -115452360 - L1MC3 LINE L1 -2289 4275 4154 301 215 0 0 chr6 73827231 73827310 -115452244 + L1M4 LINE L1 2833 2911 -3235 24 85 0 0 chr6 73831020 73831079 -115448475 + AT_rich Low_complexity Low_complexity 1 59 0 1724 133 85 28 chr6 73831128 73831481 -115448073 - THE1C LTR MaLR 0 375 3 403 211 352 0 chr6 73831966 73832108 -115447446 - MLT1D LTR MaLR 0 505 314 180 0 0 0 chr6 73832220 73832240 -115447314 + (T)n Simple_repeat Simple_repeat 1 20 0 990 219 177 38 chr6 73832571 73832777 -115446777 - L1MC3 LINE L1 -4187 2377 2201 1863 159 72 0 chr6 73832777 73833110 -115446444 - MER46B DNA MER2_type 0 236 5 990 219 177 38 chr6 73833110 73833356 -115446198 - L1MC3 LINE L1 -4363 2201 1862 436 258 65 65 chr6 73833347 73833564 -115445990 - L1MC3 LINE L1 -5853 192 4 * 27 73 0 0 chr6 73834709 73834764 -115444790 + AT_rich Low_complexity Low_complexity 1 55 0 29 0 0 0 chr6 73834949 73834978 -115444576 + AT_rich Low_complexity Low_complexity 1 29 0 3020 100 33 13 chr6 73836549 73837009 -115442545 + L1PA11 LINE L1 5706 6174 0 21 0 0 0 chr6 73837687 73837708 -115441846 + AT_rich Low_complexity Low_complexity 1 21 0 7384 135 85 2 chr6 73837885 73839085 -115440469 - THE1C-int LTR MaLR -281 1299 1 2040 150 16 44 chr6 73839085 73839471 -115440083 - THE1C LTR MaLR 0 375 1 23 33 0 0 chr6 73839573 73839603 -115439951 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr6 73839912 73839959 -115439595 + AT_rich Low_complexity Low_complexity 1 47 0 253 167 0 0 chr6 73840093 73840135 -115439419 - THE1C-int LTR MaLR -213 1367 1326 900 160 14 108 chr6 73841313 73841525 -115438029 - AluJo SINE Alu -115 197 6 2252 109 3 0 chr6 73841542 73841846 -115437708 - AluSq SINE Alu -4 309 5 1627 160 16 29 chr6 73841846 73842158 -115437396 - LTR23 LTR ERV1 -127 310 3 2298 107 7 0 chr6 73842230 73842540 -115437014 + AluSx SINE Alu 1 312 0 2300 109 0 0 chr6 73842553 73842857 -115436697 + AluSg1 SINE Alu 1 304 -5 336 213 27 0 chr6 73843282 73843357 -115436197 + MIR SINE MIR 111 187 -75 2512 50 0 10 chr6 73843367 73843665 -115435889 + AluY SINE Alu 1 295 -16 3604 244 49 23 chr6 73843666 73844908 -115434646 + L1M4 LINE L1 2251 3524 -2622 983 191 0 0 chr6 73844910 73845083 -115434471 + FRAM SINE Alu 1 173 -3 1134 191 64 104 chr6 73845090 73845514 -115434040 + L1M4 LINE L1 3505 3911 -2235 5018 74 0 19 chr6 73845550 73846196 -115433358 - L1PA13 LINE L1 0 6163 5530 1899 156 0 7 chr6 73846346 73846641 -115432913 + AluSx SINE Alu 1 293 -19 1076 122 11 28 chr6 73846748 73846928 -115432626 - AluSq SINE Alu -8 305 129 2120 81 3 50 chr6 73846932 73847256 -115432298 - AluSx SINE Alu 0 310 1 717 282 79 56 chr6 73847256 73847752 -115431802 - HAL1 LINE L1 -203 2304 1792 2148 86 52 0 chr6 73847752 73848043 -115431511 - AluSc SINE Alu -3 306 1 717 282 79 56 chr6 73848043 73848103 -115431451 - HAL1 LINE L1 -715 1792 1735 1212 174 29 140 chr6 73848159 73848545 -115431009 + MER2 DNA MER2_type 1 343 -1 228 219 0 0 chr6 73848586 73848668 -115430886 + A-rich Low_complexity Low_complexity 1 82 0 2257 94 3 7 chr6 73850254 73850553 -115429001 - AluSp SINE Alu -15 298 1 639 242 106 82 chr6 73850722 73851056 -115428498 - L2 LINE L2 0 3313 2988 2131 113 20 3 chr6 73851056 73851357 -115428197 - AluSx SINE Alu -6 306 1 639 242 106 82 chr6 73851357 73851563 -115427991 - L2 LINE L2 -325 2988 2600 2174 122 3 3 chr6 73851676 73851988 -115427566 - AluSx SINE Alu 0 312 1 2168 109 3 0 chr6 73852000 73852294 -115427260 - AluSx SINE Alu -17 295 1 754 238 75 35 chr6 73852972 73853199 -115426355 + MIR SINE MIR 9 244 -18 4631 137 91 139 chr6 73853830 73855438 -115424116 + pTR5 LTR ERV1 743 2438 0 2236 85 7 10 chr6 73856105 73856399 -115423155 - AluSp SINE Alu -19 294 2 1892 159 89 19 chr6 73856819 73857189 -115422365 - MER61B LTR ERV1 -29 396 1 240 133 89 0 chr6 73857301 73857346 -115422208 + L2 LINE L2 3262 3310 -3 1481 99 119 109 chr6 73857794 73857959 -115421595 - AluSx SINE Alu -16 296 125 8093 27 0 0 chr6 73857959 73859067 -115420487 - L1PA3 LINE L1 -3 6152 5045 1481 99 119 109 chr6 73859067 73859194 -115420360 - AluSx SINE Alu -187 125 1 2146 99 18 0 chr6 73859391 73859674 -115419880 - AluSx SINE Alu -24 288 1 314 135 0 0 chr6 73859840 73859903 -115419651 + Alu SINE Alu 250 299 -2 346 244 0 24 chr6 73860108 73860235 -115419319 + CT-rich Low_complexity Low_complexity 4 127 0 612 257 5 43 chr6 73860356 73860543 -115419011 - L2 LINE L2 -1086 2228 2049 1665 166 43 65 chr6 73860784 73861077 -115418477 - MLT1B LTR MaLR -3 406 109 2119 133 0 0 chr6 73861077 73861378 -115418176 - AluSx SINE Alu -11 301 1 1665 166 43 65 chr6 73861378 73861485 -115418069 - MLT1B LTR MaLR -300 109 1 2202 108 10 7 chr6 73861509 73861814 -115417740 - AluSq SINE Alu -7 306 1 2117 118 11 0 chr6 73861824 73862111 -115417443 - AluSx SINE Alu -22 290 1 2089 123 3 0 chr6 73862143 73862427 -115417127 - AluSx SINE Alu -23 289 5 2053 124 40 0 chr6 73863099 73863398 -115416156 - AluSp SINE Alu -2 311 1 306 377 63 13 chr6 73863567 73863726 -115415828 + MIR3 SINE MIR 19 185 -23 888 124 16 0 chr6 73864129 73864258 -115415296 - AluSg SINE Alu -179 131 1 1702 147 64 4 chr6 73865087 73865352 -115414202 - AluSx SINE Alu -31 281 1 244 326 113 7 chr6 73865563 73865704 -115413850 - MIR SINE MIR -44 218 63 284 273 0 0 chr6 73866210 73866265 -115413289 + L2 LINE L2 3133 3187 -85 1790 123 8 16 chr6 73866350 73866601 -115412953 + AluSx SINE Alu 1 249 -63 1003 235 28 20 chr6 73867046 73867301 -115412253 + MIR SINE MIR 6 262 0 578 194 99 26 chr6 73867973 73868164 -115411390 + L1MC5 LINE L1 7734 7938 -23 495 200 154 0 chr6 73868185 73868315 -115411239 + MIR SINE MIR 56 205 -57 305 282 160 17 chr6 73868417 73868532 -115411022 - L2 LINE L2 0 3313 3216 186 43 0 0 chr6 73868532 73868555 -115410999 + (TA)n Simple_repeat Simple_repeat 1 23 0 305 282 160 17 chr6 73868555 73868620 -115410934 - L2 LINE L2 -97 3216 3107 24 53 0 0 chr6 73868679 73868717 -115410837 + AT_rich Low_complexity Low_complexity 1 38 0 748 183 37 58 chr6 73868861 73869052 -115410502 + MLT1A2 LTR MaLR 65 251 -123 2460 81 0 3 chr6 73869731 73870041 -115409513 + AluY SINE Alu 1 309 -2 22 0 0 0 chr6 73870041 73870063 -115409491 + AT_rich Low_complexity Low_complexity 1 22 0 2175 129 0 3 chr6 73870263 73870574 -115408980 + AluSx SINE Alu 1 310 -2 402 301 73 78 chr6 73871017 73871399 -115408155 + Charlie8 DNA MER1_type 13 392 -2025 552 99 25 0 chr6 73871402 73871483 -115408071 + AluSg1 SINE Alu 4 86 -223 289 228 0 0 chr6 73871588 73871645 -115407909 + L2 LINE L2 3257 3313 0 1490 183 12 0 chr6 73871761 73872001 -115407553 + AluSx SINE Alu 1 243 -69 2102 138 0 0 chr6 73872017 73872315 -115407239 - AluSx SINE Alu -14 298 1 290 333 0 0 chr6 73872316 73872403 -115407151 - L2 LINE L2 -4 3309 3223 272 314 97 0 chr6 73872517 73872641 -115406913 - MLT1L LTR MaLR -125 490 355 1558 88 0 19 chr6 73872683 73872888 -115406666 - AluSg/x SINE Alu -15 295 95 238 143 0 0 chr6 73872888 73872923 -115406631 - Alu SINE Alu -273 35 1 739 174 98 84 chr6 73872947 73873275 -115406279 - MLT1B LTR MaLR 0 390 1 1159 147 6 0 chr6 73873307 73873484 -115406070 + AluJo SINE Alu 121 298 -14 1862 122 3 68 chr6 73873535 73873856 -115405698 + AluSx SINE Alu 1 300 -12 5101 86 18 0 chr6 73874352 73875018 -115404536 - L1PA13 LINE L1 0 6163 5486 2263 110 0 3 chr6 73875044 73875344 -115404210 - AluSx SINE Alu -13 299 1 570 263 100 70 chr6 73875786 73875989 -115403565 - LTR40a LTR ERVL -120 399 203 1419 166 129 14 chr6 73875989 73876130 -115403424 - AluJb SINE Alu -2 310 187 293 0 27 0 chr6 73876130 73876167 -115403387 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2129 121 3 0 chr6 73876167 73876449 -115403105 - AluSx SINE Alu -29 283 1 1419 166 129 14 chr6 73876449 73876584 -115402970 - AluJb SINE Alu -124 188 1 570 263 100 70 chr6 73876584 73876650 -115402904 - LTR40a LTR ERVL -316 203 122 2121 129 3 0 chr6 73877013 73877308 -115402246 + AluSx SINE Alu 1 296 -16 514 249 40 46 chr6 73877556 73877742 -115401812 - MIR SINE MIR -42 220 36 1128 130 5 38 chr6 73877984 73878169 -115401385 + AluSq SINE Alu 135 313 0 1901 176 0 3 chr6 73878672 73878984 -115400570 - AluSx SINE Alu -1 311 1 1958 133 11 11 chr6 73878989 73879321 -115400233 - AluSx SINE Alu 0 333 2 22 35 0 0 chr6 73879326 73879355 -115400199 + AT_rich Low_complexity Low_complexity 1 29 0 264 151 47 0 chr6 73879819 73879875 -115399679 - MLT2B1 LTR ERVL 0 520 349 1056 162 17 0 chr6 73879881 73880054 -115399500 - AluSg/x SINE Alu -2 310 135 2068 171 62 8 chr6 73880065 73880450 -115399104 - MLT2B1 LTR ERVL -84 436 31 2489 53 10 3 chr6 73881063 73881362 -115398192 + AluSq SINE Alu 1 301 -12 2491 86 0 0 chr6 73883262 73883564 -115395990 - AluSx SINE Alu -10 302 1 436 213 0 0 chr6 73883943 73884023 -115395531 - FLAM SINE Alu -10 133 54 679 256 119 0 chr6 73884490 73884717 -115394837 - MIR SINE MIR -4 258 5 2019 142 30 0 chr6 73884761 73885064 -115394490 - AluSx SINE Alu 0 312 1 30 0 0 0 chr6 73885230 73885260 -115394294 + AT_rich Low_complexity Low_complexity 1 30 0 2057 115 7 0 chr6 73885260 73885539 -115394015 - AluSx SINE Alu -31 281 1 298 220 78 78 chr6 73885594 73885735 -115393819 + L2 LINE L2 3173 3313 0 506 261 164 15 chr6 73885875 73885933 -115393621 - MIR SINE MIR -3 259 211 656 211 211 0 chr6 73885933 73886066 -115393488 - FRAM SINE Alu -5 161 1 506 261 164 15 chr6 73886066 73886202 -115393352 - MIR SINE MIR -51 211 36 1302 156 136 27 chr6 73886312 73886569 -115392985 - AluJo SINE Alu -11 301 17 2173 105 0 13 chr6 73886581 73886885 -115392669 + AluSx SINE Alu 1 300 -12 2303 107 3 0 chr6 73887229 73887528 -115392026 - AluSp SINE Alu -9 304 5 351 271 112 9 chr6 73887793 73887900 -115391654 + L2 LINE L2 3144 3261 -11 227 276 204 0 chr6 73888656 73888754 -115390800 + MIR SINE MIR 61 178 -84 229 368 0 0 chr6 73889634 73889721 -115389833 + MIR SINE MIR 13 99 -163 2337 96 3 13 chr6 73889721 73890034 -115389520 - AluSp SINE Alu -2 311 2 2148 133 0 3 chr6 73890043 73890343 -115389211 - AluSx SINE Alu -13 299 1 2097 111 38 3 chr6 73890404 73890693 -115388861 + AluSq SINE Alu 1 299 -14 425 315 128 15 chr6 73890717 73890984 -115388570 + MLT1L LTR MaLR 236 608 0 1705 191 3 13 chr6 73891115 73891414 -115388140 - AluJo SINE Alu -16 296 1 265 271 66 33 chr6 73892575 73892697 -115386857 - LTR67 LTR ERVL 0 557 432 1882 141 0 7 chr6 73892947 73893238 -115386316 + AluJb SINE Alu 1 289 -23 21 0 0 0 chr6 73893295 73893316 -115386238 + AT_rich Low_complexity Low_complexity 1 21 0 1840 140 7 33 chr6 73893461 73893556 -115385998 - AluSq SINE Alu -21 292 196 2373 84 3 0 chr6 73893556 73893854 -115385700 - AluY SINE Alu -12 299 1 1840 140 7 33 chr6 73893854 73894058 -115385496 - AluSq SINE Alu -117 196 1 1774 114 0 4 chr6 73894609 73894845 -115384709 + AluSx SINE Alu 1 235 -77 684 36 0 0 chr6 73894868 73894951 -115384603 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 306 0 0 0 chr6 73894964 73894998 -115384556 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1844 133 34 0 chr6 73895000 73895263 -115384291 - AluSg SINE Alu -38 272 1 22 0 0 0 chr6 73895481 73895503 -115384051 + AT_rich Low_complexity Low_complexity 1 22 0 2102 96 4 4 chr6 73895546 73895877 -115383677 - AluSg SINE Alu 0 331 1 253 306 14 42 chr6 73896189 73896333 -115383221 - LTR16C LTR ERVL -9 482 343 540 343 52 46 chr6 73896394 73896892 -115382662 - ERVL LTR ERVL -1910 3854 3354 21 0 0 0 chr6 73897709 73897730 -115381824 + AT_rich Low_complexity Low_complexity 1 21 0 2377 91 0 7 chr6 73897949 73898257 -115381297 + AluSp SINE Alu 1 306 -7 34 72 0 0 chr6 73898305 73898374 -115381180 + AT_rich Low_complexity Low_complexity 1 69 0 2217 108 7 0 chr6 73898383 73898679 -115380875 - AluSx SINE Alu -14 298 1 299 229 28 37 chr6 73898679 73898788 -115380766 + L1ME4a LINE L1 5815 5922 -199 24 32 0 0 chr6 73898823 73898854 -115380700 + AT_rich Low_complexity Low_complexity 1 31 0 365 307 67 18 chr6 73899034 73899197 -115380357 - MIR3 SINE MIR -14 194 20 192 97 0 0 chr6 73899763 73899794 -115379760 + (T)n Simple_repeat Simple_repeat 1 31 0 303 352 45 0 chr6 73899884 73899972 -115379582 - L2 LINE L2 -20 3293 3202 2325 118 0 3 chr6 73899976 73900289 -115379265 - AluSx SINE Alu 0 312 1 2419 99 0 6 chr6 73900557 73900870 -115378684 - AluSq SINE Alu -2 311 1 21 0 0 0 chr6 73901224 73901245 -115378309 + AT_rich Low_complexity Low_complexity 1 21 0 639 295 133 31 chr6 73901267 73901395 -115378159 - MLT1L LTR MaLR -35 580 467 2160 125 0 0 chr6 73901395 73901692 -115377862 - AluSx SINE Alu -10 302 6 639 295 133 31 chr6 73901692 73902051 -115377503 - MLT1L LTR MaLR -148 467 43 290 296 74 0 chr6 73902181 73902262 -115377292 - L2 LINE L2 -4 3309 3223 463 277 132 28 chr6 73902276 73902633 -115376921 - MLT1L LTR MaLR -11 604 211 2263 123 0 0 chr6 73902943 73903251 -115376303 + AluSx SINE Alu 1 308 -4 23 54 0 0 chr6 73903329 73903366 -115376188 + AT_rich Low_complexity Low_complexity 1 37 0 183 42 0 0 chr6 73903537 73903561 -115375993 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1908 140 4 0 chr6 73903570 73903841 -115375713 - AluSx SINE Alu -40 272 1 1534 190 24 10 chr6 73904023 73904318 -115375236 - AluJb SINE Alu -13 299 1 1044 166 0 0 chr6 73904325 73904482 -115375072 - FRAM SINE Alu -20 156 1 2006 131 7 0 chr6 73904527 73904845 -115374709 - AluSq SINE Alu 0 320 1 349 280 120 16 chr6 73905769 73905894 -115373660 + MIR SINE MIR 12 149 -113 797 241 126 55 chr6 73906006 73906371 -115373183 + MLT1J LTR MaLR 119 509 -2 21 36 0 0 chr6 73906449 73906477 -115373077 + AT_rich Low_complexity Low_complexity 1 28 0 240 122 0 0 chr6 73906938 73906979 -115372575 + (CA)n Simple_repeat Simple_repeat 2 42 0 2124 116 7 7 chr6 73907186 73907489 -115372065 + AluSx SINE Alu 1 303 -9 333 278 88 11 chr6 73907864 73908006 -115371548 - MIR3 SINE MIR -66 142 3 914 217 50 71 chr6 73908170 73908347 -115371207 - MER46C DNA MER2_type -23 315 147 2130 108 28 0 chr6 73908347 73908633 -115370921 + AluSq SINE Alu 1 294 -19 914 217 50 71 chr6 73908633 73908777 -115370777 - MER46C DNA MER2_type -191 147 1 2088 122 0 14 chr6 73909659 73909988 -115369566 + AluSx SINE Alu 1 325 0 2574 77 58 3 chr6 73910190 73910584 -115368970 + L1PA8 LINE L1 5785 6172 0 549 278 70 27 chr6 73911187 73911374 -115368180 - MIR3 SINE MIR -13 195 1 2099 142 0 3 chr6 73912177 73912480 -115367074 - AluSx SINE Alu -10 302 1 1464 103 108 5 chr6 73912614 73912854 -115366700 + AluSx SINE Alu 50 311 0 1155 86 81 5 chr6 73912969 73913155 -115366399 - MER30 DNA MER1_type -30 200 1 21 0 0 0 chr6 73913261 73913282 -115366272 + AT_rich Low_complexity Low_complexity 1 21 0 1889 156 7 10 chr6 73913303 73913598 -115365956 - AluSx SINE Alu -17 295 2 270 400 19 7 chr6 73914372 73914527 -115365027 + MER5A DNA MER1_type 1 157 -32 1454 219 230 6 chr6 73914541 73915190 -115364364 + LTR50 LTR ERVL 2 795 0 2252 124 0 0 chr6 73915357 73915664 -115363890 + AluSx SINE Alu 1 307 -5 1972 117 37 0 chr6 73915842 73916115 -115363439 + AluSc SINE Alu 1 283 -26 312 83 0 0 chr6 73916115 73916163 -115363391 + (TA)n Simple_repeat Simple_repeat 2 49 0 322 346 31 15 chr6 73916929 73917059 -115362495 - MIR SINE MIR -56 152 21 658 216 0 0 chr6 73917629 73917745 -115361809 + FLAM_A SINE Alu 1 116 -17 1384 177 3 116 chr6 73917757 73918085 -115361469 + AluSp SINE Alu 1 291 -22 2041 92 0 0 chr6 73918158 73918408 -115361146 + AluSq SINE Alu 38 287 -26 195 129 0 0 chr6 73918408 73918439 -115361115 + (TA)n Simple_repeat Simple_repeat 1 31 0 347 313 0 0 chr6 73918439 73918535 -115361019 + L1MC4 LINE L1 6614 6709 -1333 406 260 42 0 chr6 73919798 73919894 -115359660 + MER91C DNA MER1_type 4 103 -37 939 186 97 115 chr6 73920609 73920850 -115358704 - MER69 DNA AcHobo -1 2525 2281 1455 176 4 24 chr6 73920850 73921105 -115358449 - AluJb SINE Alu -62 250 1 939 186 97 115 chr6 73921105 73921146 -115358408 - MER69 DNA AcHobo -245 2281 2241 1928 97 97 0 chr6 73921146 73921413 -115358141 - AluSg1 SINE Alu -16 293 1 939 186 97 115 chr6 73921413 73921633 -115357921 - MER69 DNA AcHobo -285 2241 2031 1068 241 105 35 chr6 73921651 73922079 -115357475 - MER69 DNA AcHobo -1966 560 103 1965 157 0 0 chr6 73922414 73922707 -115356847 + AluSx SINE Alu 1 293 -19 317 363 22 0 chr6 73922895 73923030 -115356524 + L3 LINE CR1 636 773 -804 234 0 0 0 chr6 73923147 73923173 -115356381 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1927 159 3 0 chr6 73923173 73923457 -115356097 - AluSx SINE Alu -27 285 1 342 61 0 0 chr6 73923752 73923801 -115355753 + (CA)n Simple_repeat Simple_repeat 1 49 0 940 212 32 23 chr6 73923848 73924065 -115355489 + AluJo SINE Alu 2 220 -92 1389 126 16 0 chr6 73924189 73924379 -115355175 + AluSq SINE Alu 95 287 -26 1970 120 13 20 chr6 73924498 73924797 -115354757 + AluSx SINE Alu 1 297 -15 262 91 0 23 chr6 73925144 73925188 -115354366 - AluSx SINE Alu -7 295 253 1329 133 0 0 chr6 73925188 73925384 -115354170 - AluSx SINE Alu -113 199 4 2006 118 7 0 chr6 73925384 73925673 -115353881 + AluSq SINE Alu 21 311 -2 24 85 0 0 chr6 73926064 73926123 -115353431 + AT_rich Low_complexity Low_complexity 1 59 0 48 32 0 0 chr6 73926335 73926397 -115353157 + AT_rich Low_complexity Low_complexity 1 62 0 787 213 30 0 chr6 73926532 73926701 -115352853 + MER5A DNA MER1_type 13 186 -3 479 244 35 17 chr6 73926701 73926814 -115352740 + MER5B DNA MER1_type 25 139 -39 893 161 44 28 chr6 73928009 73928189 -115351365 - MER5A DNA MER1_type 0 189 7 189 0 0 0 chr6 73928196 73928217 -115351337 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1971 142 0 3 chr6 73928220 73928508 -115351046 - AluSx SINE Alu -25 287 1 2119 91 35 11 chr6 73928810 73929095 -115350459 + AluSc SINE Alu 1 292 -17 370 309 62 52 chr6 73929097 73929421 -115350133 + L1ME LINE L1 5322 5648 -518 2170 127 0 19 chr6 73929655 73929971 -115349583 + AluSx SINE Alu 3 312 0 1262 123 10 30 chr6 73930120 73930323 -115349231 + AluSg/x SINE Alu 90 288 -22 398 92 0 15 chr6 73930323 73930388 -115349166 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 1618 116 46 4 chr6 73930624 73930865 -115348689 + AluSg SINE Alu 38 288 -22 427 307 157 22 chr6 73930924 73931237 -115348317 + L2 LINE L2 1343 1697 -1617 2770 80 3 5 chr6 73931319 73931337 -115348217 + L1PB1 LINE L1 5763 5780 -371 360 0 0 0 chr6 73931337 73931377 -115348177 + (TG)n Simple_repeat Simple_repeat 2 41 0 2770 80 3 5 chr6 73931377 73931748 -115347806 + L1PB1 LINE L1 5780 6151 0 384 264 194 5 chr6 73932074 73932275 -115347279 + L2 LINE L2 2464 2702 -612 416 203 75 15 chr6 73932309 73932442 -115347112 - L1MC5 LINE L1 -76 7885 7745 372 204 45 11 chr6 73932485 73932573 -115346981 - MER81 DNA DNA 0 114 24 328 325 129 49 chr6 73932581 73932867 -115346687 + L2 LINE L2 3005 3313 0 4133 215 61 41 chr6 73933515 73934642 -115344912 - L1MC4 LINE L1 -7 8035 6880 2325 110 0 3 chr6 73934642 73934952 -115344602 + AluSx SINE Alu 1 309 -3 4133 215 61 41 chr6 73934952 73935079 -115344475 - L1MC4 LINE L1 -1162 6880 6757 397 241 0 11 chr6 73935082 73935169 -115344385 - L1MC4a LINE L1 -1245 6563 6478 192 179 0 0 chr6 73935169 73935208 -115344346 + A-rich Low_complexity Low_complexity 1 39 0 358 171 13 0 chr6 73935209 73935285 -115344269 - L1MC4a LINE L1 -1319 6489 6413 2846 146 55 65 chr6 73935288 73935738 -115343816 + L1MA9 LINE L1 5593 6035 -277 2105 136 0 0 chr6 73935738 73936033 -115343521 + AluSq SINE Alu 1 295 -18 2846 146 55 65 chr6 73936033 73936309 -115343245 + L1MA9 LINE L1 6035 6312 0 2240 126 0 0 chr6 73936502 73936804 -115342750 - AluSx SINE Alu -10 302 1 2549 55 0 19 chr6 73936813 73937125 -115342429 - AluY SINE Alu -5 306 1 239 318 24 40 chr6 73937360 73937486 -115342068 + L2 LINE L2 2972 3095 -177 666 241 174 5 chr6 73937544 73937739 -115341815 + MIR SINE MIR 32 259 -3 269 298 40 80 chr6 73937787 73937938 -115341616 + L2 LINE L2 3125 3269 -3 2961 111 27 27 chr6 73938891 73939415 -115340139 + L1MA5A LINE L1 5768 6291 -6 198 0 0 0 chr6 73939927 73939949 -115339605 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 1907 133 3 7 chr6 73939955 73940240 -115339314 - AluSx SINE Alu -28 284 1 2168 115 0 0 chr6 73940394 73940680 -115338874 - AluSx SINE Alu -26 286 1 250 241 56 28 chr6 73940705 73940813 -115338741 - L1ME4a LINE L1 -54 6067 5957 7245 30 21 1 chr6 73940855 73942260 -115337294 - L1PA4 LINE L1 -2 6153 4729 1998 112 40 0 chr6 73943830 73944108 -115335446 + AluSx SINE Alu 1 289 -23 2198 121 10 0 chr6 73945007 73945305 -115334249 - AluSx SINE Alu -11 301 1 23 33 0 0 chr6 73945458 73945488 -115334066 + AT_rich Low_complexity Low_complexity 1 30 0 1339 173 50 73 chr6 73945494 73945795 -115333759 - AluJb SINE Alu -18 294 1 246 298 0 0 chr6 73946358 73946405 -115333149 - L2 LINE L2 -21 3292 3246 26 0 0 0 chr6 73946571 73946597 -115332957 + AT_rich Low_complexity Low_complexity 1 26 0 1929 124 24 24 chr6 73946602 73946893 -115332661 + AluSx SINE Alu 5 295 -17 238 325 86 48 chr6 73946929 73947197 -115332357 - L2 LINE L2 -343 2971 2694 2142 73 66 0 chr6 73947210 73947484 -115332070 - AluSg SINE Alu -18 292 1 226 191 15 15 chr6 73947574 73947642 -115331912 + GA-rich Low_complexity Low_complexity 1 68 0 379 310 114 72 chr6 73947751 73948128 -115331426 - L2 LINE L2 -831 2483 2091 362 210 74 0 chr6 73948206 73948287 -115331267 + MIR SINE MIR 167 253 -9 2335 101 0 0 chr6 73948779 73949077 -115330477 + AluSg SINE Alu 1 298 -12 291 232 0 0 chr6 73949088 73949144 -115330410 + AluS SINE Alu 2 57 -251 708 113 0 0 chr6 73949144 73949241 -115330313 - AluJ/FLAM SINE Alu -215 97 1 894 213 30 34 chr6 73949420 73949453 -115330101 - MER5C DNA MER1_type -89 235 203 1691 113 0 0 chr6 73949453 73949683 -115329871 + AluSq SINE Alu 84 313 0 894 213 30 34 chr6 73949683 73949717 -115329837 - MER5C DNA MER1_type -121 203 170 1976 133 10 17 chr6 73949717 73950018 -115329536 - AluSx SINE Alu -13 299 1 894 213 30 34 chr6 73950018 73950184 -115329370 - MER5C DNA MER1_type -154 170 2 460 323 179 5 chr6 73950463 73950686 -115328868 + MIR SINE MIR 1 262 0 2403 94 3 0 chr6 73951505 73951812 -115327742 - AluSp SINE Alu -4 309 2 186 266 53 80 chr6 73951893 73952006 -115327548 + MIR SINE MIR 153 262 0 510 333 153 23 chr6 73952346 73953019 -115326535 + L2 LINE L2 2535 3302 -11 215 368 52 0 chr6 73953045 73953181 -115326373 - L2 LINE L2 -1109 2205 2063 2325 91 0 3 chr6 73953317 73953613 -115325941 + AluSx SINE Alu 11 305 -7 1123 196 5 14 chr6 73954320 73954539 -115325015 - AluJo SINE Alu -8 304 88 21 0 0 0 chr6 73954873 73954894 -115324660 + AT_rich Low_complexity Low_complexity 1 21 0 13439 132 49 7 chr6 73955256 73955413 -115324141 - Tigger1 DNA MER2_type -1 2417 2268 2203 184 91 22 chr6 73955413 73955874 -115323680 - LTR42 LTR ERVL 0 495 3 13439 132 49 7 chr6 73955874 73958013 -115321541 - Tigger1 DNA MER2_type -150 2268 24 22 56 0 0 chr6 73958030 73958066 -115321488 + AT_rich Low_complexity Low_complexity 1 36 0 1874 125 3 31 chr6 73958578 73958865 -115320689 - AluSx SINE Alu -20 292 14 1547 154 42 8 chr6 73959407 73959666 -115319888 + AluSq SINE Alu 37 304 -9 237 204 20 10 chr6 73961883 73961981 -115317573 + (CCG)n Simple_repeat Simple_repeat 2 100 0 453 319 128 55 chr6 73962128 73962870 -115316684 - L1M2 LINE L1 -5458 1391 596 253 158 40 13 chr6 73965393 73965469 -115314085 + (TA)n Simple_repeat Simple_repeat 2 79 0 1818 102 20 4 chr6 73966872 73967118 -115312436 - AluSx SINE Alu -13 299 50 212 221 15 15 chr6 73967148 73967216 -115312338 + (TTATA)n Simple_repeat Simple_repeat 3 70 0 21 36 0 0 chr6 73968407 73968435 -115311119 + AT_rich Low_complexity Low_complexity 1 28 0 386 221 113 74 chr6 73968905 73969136 -115310418 - L1ME2 LINE L1 -9 6155 5916 21 36 0 0 chr6 73970320 73970348 -115309206 + AT_rich Low_complexity Low_complexity 1 28 0 194 231 250 28 chr6 73971037 73971145 -115308409 + MIR SINE MIR 42 173 -89 182 185 259 37 chr6 73972956 73973037 -115306517 - MIR SINE MIR -113 149 51 1280 124 22 0 chr6 73973091 73973276 -115306278 - AluSp SINE Alu -11 302 114 186 43 0 0 chr6 73973810 73973833 -115305721 + (TG)n Simple_repeat Simple_repeat 2 24 0 1946 152 3 3 chr6 73973854 73974150 -115305404 - AluJb SINE Alu -16 296 1 207 0 0 0 chr6 73974170 73974193 -115305361 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 949 76 8 0 chr6 73974193 73974312 -115305242 - AluY SINE Alu -191 120 1 345 176 120 19 chr6 73974397 73974505 -115305049 + MER103 DNA DNA 14 132 -34 244 179 18 18 chr6 73974513 73974569 -115304985 - LTR33 LTR ERVL 0 521 466 10309 124 25 0 chr6 73974578 73977059 -115302495 + L1PA10 LINE L1 3673 6166 -2 2056 94 14 0 chr6 73977061 73977381 -115302173 - AluSx SINE Alu 0 325 2 440 293 139 19 chr6 73977430 73977754 -115301800 - LTR33 LTR ERVL -157 364 2 1726 128 4 34 chr6 73977983 73978306 -115301248 - AluSx SINE Alu 0 339 25 1277 107 19 0 chr6 73978309 73978515 -115301039 + L1P LINE L1 5156 5365 -781 2233 72 3 3 chr6 73978515 73978805 -115300749 + AluY SINE Alu 1 290 -21 2583 128 22 27 chr6 73979241 73979688 -115299866 - MER65A LTR ERV1 0 445 1 2422 97 0 7 chr6 73980296 73980606 -115298948 + AluSx SINE Alu 1 308 -4 2092 98 36 39 chr6 73980617 73980923 -115298631 + AluSc SINE Alu 3 307 -2 291 368 86 0 chr6 73981095 73981212 -115298342 - L2 LINE L2 0 3272 3146 2231 121 0 6 chr6 73981412 73981727 -115297827 + AluSq SINE Alu 1 313 0 1385 231 128 59 chr6 73982107 73982515 -115297039 + MLT1F LTR MaLR 1 452 -90 1652 130 111 11 chr6 73982515 73982785 -115296769 - AluSx SINE Alu -15 297 1 1385 231 128 59 chr6 73982785 73982883 -115296671 + MLT1F LTR MaLR 452 542 0 960 194 106 37 chr6 73982890 73983267 -115296287 - L1MC5 LINE L1 -170 7791 7389 367 187 134 22 chr6 73983325 73983459 -115296095 - L1MC5 LINE L1 -567 7394 7246 2208 97 21 0 chr6 73983485 73983774 -115295780 - AluSq SINE Alu -18 295 1 843 276 27 35 chr6 73983794 73984274 -115295280 - L1MC5 LINE L1 -826 6982 6614 1719 185 30 6 chr6 73984289 73984624 -115294930 + L1PA16 LINE L1 5805 6147 -19 2203 98 3 7 chr6 73984627 73984922 -115294632 - AluSp SINE Alu -19 294 1 1149 199 3 51 chr6 73984945 73985241 -115294313 + L1MB8 LINE L1 5896 6177 -1 27 49 0 0 chr6 73985666 73985707 -115293847 + AT_rich Low_complexity Low_complexity 1 41 0 1735 186 3 0 chr6 73985758 73986059 -115293495 + AluJb SINE Alu 1 302 -10 2043 147 0 3 chr6 73986110 73986409 -115293145 + AluSx SINE Alu 1 298 -14 1449 108 123 0 chr6 73986509 73986777 -115292777 - L1MA7 LINE L1 -2 6289 5989 291 175 0 26 chr6 73986778 73986892 -115292662 + (TTAA)n Simple_repeat Simple_repeat 2 112 0 255 288 69 85 chr6 73987240 73987266 -115292288 + MLT1L LTR MaLR 129 154 -461 466 239 78 24 chr6 73987266 73987433 -115292121 + MER5B DNA MER1_type 1 176 -2 255 288 69 85 chr6 73987433 73987725 -115291829 + MLT1L LTR MaLR 154 442 -173 1541 302 39 12 chr6 73987730 73988290 -115291264 - MLT2E LTR ERVL -29 599 25 2199 126 0 0 chr6 73988852 73989162 -115290392 - AluSx SINE Alu -2 310 1 1638 63 0 54 chr6 73989801 73990022 -115289532 - AluSc SINE Alu -26 283 75 248 75 0 25 chr6 73990122 73990162 -115289392 + (TTCCC)n Simple_repeat Simple_repeat 1 39 0 2018 142 7 3 chr6 73990162 73990458 -115289096 - AluSx SINE Alu -15 297 1 1043 99 14 0 chr6 73990811 73990952 -115288602 + AluSq/x SINE Alu 1 143 -169 547 287 252 16 chr6 73990952 73991266 -115288288 - L2 LINE L2 -98 3215 2828 204 40 0 0 chr6 73991278 73991303 -115288251 + (T)n Simple_repeat Simple_repeat 1 25 0 555 223 15 89 chr6 73991339 73991541 -115288013 + MER112 DNA MER1_type 70 256 -4 483 274 28 73 chr6 73991541 73991720 -115287834 - L2 LINE L2 -508 2806 2636 724 305 34 4 chr6 73992317 73992579 -115286975 + LTR33 LTR ERVL 2 271 -250 1005 105 0 0 chr6 73992602 73992735 -115286819 - AluSq/x SINE Alu -180 133 1 2299 110 0 3 chr6 73992748 73993056 -115286498 - AluSx SINE Alu -5 307 1 703 254 84 19 chr6 73993056 73993269 -115286285 + LTR33 LTR ERVL 255 481 -40 813 264 35 0 chr6 73993725 73993926 -115285628 + MIR SINE MIR 18 225 -37 2369 91 0 3 chr6 73994494 73994803 -115284751 - AluY SINE Alu -3 308 1 1888 128 3 31 chr6 73994986 73995428 -115284126 - AluSx SINE Alu 0 434 1 550 340 15 5 chr6 73995536 73995736 -115283818 - MIR SINE MIR -48 214 13 475 276 0 87 chr6 73995950 73996146 -115283408 + MIR SINE MIR 34 212 -50 765 276 134 46 chr6 73996462 73996526 -115283028 - LTR33 LTR ERVL 0 521 464 1935 172 3 0 chr6 73996526 73996829 -115282725 + AluSx SINE Alu 1 304 -8 765 276 134 46 chr6 73996829 73997152 -115282402 - LTR33 LTR ERVL -57 464 100 668 316 55 29 chr6 73997154 73997461 -115282093 + MLT1L LTR MaLR 205 519 -96 2089 107 20 20 chr6 73997461 73997761 -115281793 - AluSx SINE Alu -12 300 1 772 144 56 24 chr6 73998187 73998312 -115281242 - FLAM_A SINE Alu -4 129 1 2167 102 3 0 chr6 73998564 73998872 -115280682 + AluSx SINE Alu 1 309 0 26 30 0 0 chr6 73999193 73999226 -115280328 + AT_rich Low_complexity Low_complexity 1 33 0 2062 117 20 3 chr6 73999871 74000169 -115279385 + AluSq SINE Alu 1 303 -10 1893 166 3 3 chr6 74000400 74000712 -115278842 + AluSx SINE Alu 1 312 0 774 143 8 15 chr6 74001167 74001300 -115278254 - L1MD1 LINE L1 0 6636 6505 795 181 0 0 chr6 74001382 74001515 -115278039 - FLAM_C SINE Alu 0 143 11 3949 169 50 28 chr6 74001518 74002279 -115277275 - L1MD1 LINE L1 -164 6472 5690 1673 180 41 0 chr6 74002279 74002574 -115276980 - AluJo SINE Alu -5 307 1 3949 169 50 28 chr6 74002574 74002650 -115276904 - L1MD1 LINE L1 -946 5690 5617 294 29 0 0 chr6 74002671 74002706 -115276848 + (TG)n Simple_repeat Simple_repeat 2 36 0 1426 240 37 35 chr6 74002706 74003146 -115276408 - L1MD1 LINE L1 -2476 4064 3621 2167 137 0 6 chr6 74003146 74003459 -115276095 - AluSx SINE Alu -1 311 1 4463 205 198 82 chr6 74003459 74003569 -115275985 - L1MD1 LINE L1 -3642 2898 2802 1287 207 74 21 chr6 74003569 74003854 -115275700 - AluJb SINE Alu 0 302 3 1497 212 11 0 chr6 74003864 74004147 -115275407 - AluJb SINE Alu -23 289 4 4463 205 198 82 chr6 74004147 74004851 -115274703 - L1MD1 LINE L1 -3745 2795 2174 2054 135 0 13 chr6 74004851 74005154 -115274400 + AluSx SINE Alu 1 299 -13 4463 205 198 82 chr6 74005154 74005459 -115274095 - L1MD1 LINE L1 -4366 2174 1906 2443 94 0 0 chr6 74005459 74005767 -115273787 - AluSc SINE Alu -1 308 1 4463 205 198 82 chr6 74005767 74005779 -115273775 - L1MD1 LINE L1 -4634 1906 1897 2095 135 0 10 chr6 74005779 74006075 -115273479 - AluSx SINE Alu -19 293 1 4463 205 198 82 chr6 74006075 74006678 -115272876 - L1MD1 LINE L1 -4643 1897 1365 2430 239 88 12 chr6 74006678 74006996 -115272558 - MER76 LTR ERV 0 688 395 2276 81 10 3 chr6 74006996 74007291 -115272263 - AluY SINE Alu -14 297 1 2430 239 88 12 chr6 74007291 74007304 -115272250 - MER76 LTR ERV -293 395 384 2081 109 30 0 chr6 74007304 74007608 -115271946 - AluSq SINE Alu 0 313 1 2430 239 88 12 chr6 74007608 74007915 -115271639 - MER76 LTR ERV -304 384 1 4463 205 198 82 chr6 74007915 74008633 -115270921 - L1MD1 LINE L1 -5175 1365 732 2502 70 0 0 chr6 74008633 74008934 -115270620 - AluSc SINE Alu -8 301 1 4463 205 198 82 chr6 74008934 74009047 -115270507 - L1MD1 LINE L1 -5808 732 1 958 238 138 20 chr6 74009610 74010180 -115269374 - LTR50 LTR ERVL -1 794 35 243 0 0 0 chr6 74010255 74010282 -115269272 + (TG)n Simple_repeat Simple_repeat 2 28 0 2224 112 30 0 chr6 74010347 74010651 -115268903 + AluSq SINE Alu 1 313 0 2140 132 23 79 chr6 74011521 74011875 -115267679 + THE1C LTR MaLR 1 332 -43 1741 147 23 33 chr6 74011875 74012175 -115267379 - AluSx SINE Alu -11 301 5 2140 132 23 79 chr6 74012175 74012214 -115267340 + THE1C LTR MaLR 332 372 -3 22 35 0 0 chr6 74012222 74012251 -115267303 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr6 74012257 74012293 -115267261 + AT_rich Low_complexity Low_complexity 1 36 0 1655 176 36 0 chr6 74012293 74012571 -115266983 - AluJb SINE Alu -23 289 2 1196 171 128 13 chr6 74012581 74012879 -115266675 - L1MA10 LINE L1 0 6334 6003 207 0 0 0 chr6 74013042 74013065 -115266489 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 201 290 130 0 chr6 74013611 74013680 -115265874 - MIR SINE MIR -101 107 30 21 36 0 0 chr6 74013988 74014016 -115265538 + AT_rich Low_complexity Low_complexity 1 28 0 752 166 0 37 chr6 74014257 74014444 -115265110 + CT-rich Low_complexity Low_complexity 1 180 0 928 109 11 33 chr6 74014586 74014769 -115264785 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1344 34 11 6 chr6 74014791 74014970 -115264584 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2040 137 7 0 chr6 74014977 74015276 -115264278 - AluSx SINE Alu -11 301 1 1656 172 7 26 chr6 74015499 74015802 -115263752 - AluJb SINE Alu -15 297 1 26 0 0 0 chr6 74015834 74015860 -115263694 + AT_rich Low_complexity Low_complexity 1 26 0 182 162 0 149 chr6 74015874 74015948 -115263606 - L2 LINE L2 -71 3242 3180 273 221 250 10 chr6 74017187 74017291 -115262263 - MIR SINE MIR -10 252 124 2208 108 3 10 chr6 74017301 74017607 -115261947 - AluSq SINE Alu -9 304 1 375 338 34 0 chr6 74017705 74017853 -115261701 - MIR SINE MIR -108 154 2 1711 206 0 3 chr6 74018149 74018445 -115261109 + AluJo SINE Alu 1 295 -17 27399 28 0 0 chr6 74018500 74021725 -115257829 - L1PA3 LINE L1 -825 5321 2097 7617 24 0 0 chr6 74021725 74022553 -115257001 + L1PA3 LINE L1 5325 6152 -3 1541 205 95 15 chr6 74022591 74022927 -115256627 + MLT1A1 LTR MaLR 1 363 -2 232 206 9 75 chr6 74022976 74023083 -115256471 - L1M4 LINE L1 -2665 3481 3382 1182 212 107 17 chr6 74023114 74023380 -115256174 - MLT1E LTR MaLR -8 585 344 345 47 0 0 chr6 74023380 74023423 -115256131 + (GA)n Simple_repeat Simple_repeat 1 43 0 1182 212 107 17 chr6 74023423 74023604 -115255950 - MLT1E LTR MaLR -249 344 1 832 272 70 0 chr6 74023656 74023998 -115255556 - L1M4 LINE L1 -2824 3322 2957 246 98 49 24 chr6 74024196 74024237 -115255317 - MLT2D LTR ERVL 0 554 513 259 75 0 38 chr6 74024242 74024295 -115255259 + (TC)n Simple_repeat Simple_repeat 2 52 0 2097 177 8 27 chr6 74024299 74024666 -115254888 - MLT2D LTR ERVL -54 360 1 593 374 100 18 chr6 74024668 74025326 -115254228 + L2 LINE L2 706 1417 -1897 531 307 11 6 chr6 74025368 74025544 -115254010 + LTR33 LTR ERVL 343 519 -2 1303 178 4 29 chr6 74025947 74026188 -115253366 - AluJo SINE Alu -15 297 63 2207 116 0 0 chr6 74026358 74026650 -115252904 - AluSq SINE Alu -21 292 1 1516 172 0 34 chr6 74027395 74027662 -115251892 + AluJo SINE Alu 39 296 -16 2492 70 0 3 chr6 74027666 74027967 -115251587 + AluSq SINE Alu 1 300 -13 6847 139 28 18 chr6 74027975 74028255 -115251299 - Tigger3b DNA MER2_type -1799 1229 953 1313 209 72 14 chr6 74028255 74028532 -115251022 + AluJo SINE Alu 1 293 -19 6847 139 28 18 chr6 74028532 74029403 -115250151 - Tigger3b DNA MER2_type -2075 953 67 1930 132 0 74 chr6 74029403 74029728 -115249826 - AluSx SINE Alu -11 301 1 3193 89 36 28 chr6 74032603 74033073 -115246481 - MER41B LTR ERV1 0 635 162 2281 65 14 0 chr6 74033096 74033374 -115246180 - AluSx SINE Alu -28 284 3 1171 101 6 28 chr6 74033375 74033497 -115246057 - MER41B LTR ERV1 -461 174 51 3609 128 79 22 chr6 74033497 74033883 -115245671 - LTR9 LTR ERV1 0 612 249 2036 103 0 38 chr6 74033883 74034175 -115245379 + AluSx SINE Alu 1 281 -31 2588 52 3 3 chr6 74034176 74034486 -115245068 + AluY SINE Alu 1 310 -1 3609 128 79 22 chr6 74034486 74034676 -115244878 - LTR9 LTR ERV1 -362 250 1 1171 101 6 28 chr6 74034676 74034731 -115244823 - MER41B LTR ERV1 -584 51 1 444 218 0 0 chr6 74035248 74035326 -115244228 - Tigger3b DNA MER2_type -1152 79 2 2570 45 0 13 chr6 74036474 74036787 -115242767 - AluY SINE Alu -2 309 1 1948 98 3 51 chr6 74036788 74037083 -115242471 - AluSx SINE Alu -31 281 1 2502 132 36 8 chr6 74037083 74037469 -115242085 + LTR9 LTR ERV1 216 612 0 848 106 8 0 chr6 74037469 74037591 -115241963 + MER41B LTR ERV1 52 174 -461 2253 72 14 0 chr6 74037592 74037870 -115241684 + AluSx SINE Alu 3 284 -28 1548 134 53 50 chr6 74037893 74038192 -115241362 + MER41B LTR ERV1 162 461 -174 251 50 0 0 chr6 74038298 74038364 -115241190 + AluSx SINE Alu 269 334 0 527 237 33 46 chr6 74039252 74039404 -115240150 + MIR SINE MIR 58 207 -55 2651 143 10 3 chr6 74039740 74040125 -115239429 - MLT1B LTR MaLR -2 388 1 1850 129 3 37 chr6 74040291 74040586 -115238968 + AluSx SINE Alu 2 286 -26 689 174 124 56 chr6 74040600 74040761 -115238793 + AluJb SINE Alu 124 295 -17 1491 180 56 53 chr6 74040895 74041234 -115238320 + MER2 DNA MER2_type 1 340 -4 2148 132 0 7 chr6 74041345 74041649 -115237905 - AluSx SINE Alu -10 302 1 194 62 31 0 chr6 74042044 74042076 -115237478 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1005 293 41 79 chr6 74042980 74043331 -115236223 - MLT1L LTR MaLR 0 615 252 1591 185 32 72 chr6 74043331 74043648 -115235906 - MLT1B LTR MaLR 0 390 62 2002 114 14 14 chr6 74043648 74043928 -115235626 + AluSq SINE Alu 1 280 -33 432 0 0 0 chr6 74043928 74043976 -115235578 + (CA)n Simple_repeat Simple_repeat 1 48 0 1591 185 32 72 chr6 74043976 74044062 -115235492 - MLT1B LTR MaLR -326 64 2 1005 293 41 79 chr6 74044062 74044345 -115235209 - MLT1L LTR MaLR -363 252 5 301 252 134 47 chr6 74044587 74044714 -115234840 + MIR SINE MIR 55 192 -70 306 0 0 0 chr6 74045060 74045094 -115234460 + (TG)n Simple_repeat Simple_repeat 2 35 0 821 182 0 0 chr6 74045203 74045324 -115234230 + FLAM_C SINE Alu 1 121 -22 258 32 0 0 chr6 74045324 74045355 -115234199 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 228 208 42 42 chr6 74045643 74045715 -115233839 - LTR16A1 LTR ERVL 0 457 386 2058 148 0 16 chr6 74047246 74047551 -115232003 - AluJb SINE Alu -12 300 1 2314 97 3 3 chr6 74048328 74048628 -115230926 + AluSq SINE Alu 1 300 -13 299 317 20 10 chr6 74048708 74048809 -115230745 - MER5A DNA MER1_type -49 140 39 210 361 34 17 chr6 74048715 74048834 -115230720 + MER5A DNA MER1_type 69 189 0 * 190 383 21 11 chr6 74049489 74049583 -115229971 + L2 LINE L2 2708 2802 -512 2266 137 58 17 chr6 74049587 74050002 -115229552 + MSTB1 LTR MaLR 1 432 0 305 251 67 4 chr6 74050106 74050228 -115229326 + MLT1J2 LTR MaLR 102 236 -173 198 298 114 26 chr6 74050286 74050400 -115229154 + L2 LINE L2 2860 2983 -289 186 43 0 0 chr6 74050408 74050431 -115229123 + (T)n Simple_repeat Simple_repeat 1 23 0 505 89 0 13 chr6 74050438 74050517 -115229037 - Tigger1 DNA MER2_type -1710 708 631 2446 86 0 3 chr6 74050522 74050835 -115228719 - AluSx SINE Alu 0 312 1 398 296 173 22 chr6 74052388 74052614 -115226940 + MIR SINE MIR 3 262 0 30 27 0 0 chr6 74053042 74053079 -115226475 + AT_rich Low_complexity Low_complexity 1 37 0 512 216 60 5 chr6 74053678 74053867 -115225687 + MLT1D LTR MaLR 265 502 -3 436 218 27 18 chr6 74053941 74054051 -115225503 + HsTC2 DNA Tc2 13 123 -1775 2146 165 85 109 chr6 74054164 74054521 -115225033 - L1MC4 LINE L1 -1 8041 7677 1414 126 150 16 chr6 74054521 74054775 -115224779 - AluSx SINE Alu -14 288 1 2146 165 85 109 chr6 74054775 74055233 -115224321 - L1MC4 LINE L1 -365 7677 7246 1233 225 128 10 chr6 74055241 74055735 -115223819 + HsTC2 DNA Tc2 1338 1889 -9 244 292 0 0 chr6 74057435 74057507 -115222047 + HsTC2 DNA Tc2 1665 1736 -162 849 232 134 13 chr6 74057513 74057737 -115221817 - MER45C DNA AcHobo 0 953 703 698 240 62 61 chr6 74057718 74058057 -115221497 - MER45C DNA AcHobo -541 412 20 * 195 129 0 0 chr6 74058411 74058442 -115221112 + (TTCTCC)n Simple_repeat Simple_repeat 1 31 0 1589 151 77 11 chr6 74058442 74058727 -115220827 - AluJb SINE Alu -8 304 1 324 288 163 13 chr6 74058860 74059013 -115220541 + MER5B DNA MER1_type 1 176 -2 771 272 98 84 chr6 74059619 74060097 -115219457 - L2 LINE L2 0 3313 2829 200 304 114 0 chr6 74060151 74060230 -115219324 + L3 LINE CR1 1486 1573 -4 34807 72 51 3 chr6 74060366 74066227 -115213327 - L1PA5 LINE L1 -2 6152 2 1134 113 56 15 chr6 74066227 74066422 -115213132 + Tigger3b DNA MER2_type 262 464 -767 253 366 30 15 chr6 74066426 74066557 -115212997 + L2 LINE L2 3179 3311 -2 14131 81 5 1 chr6 74066660 74068612 -115210942 + L1PA4 LINE L1 2 1961 -4185 18454 38 6 1 chr6 74068614 74071626 -115207928 + L1PA4 LINE L1 3136 6152 -3 545 319 81 45 chr6 74071747 74071888 -115207666 + L2 LINE L2 2967 3101 -212 2213 119 0 16 chr6 74071888 74072206 -115207348 - AluSq SINE Alu 0 313 1 545 319 81 45 chr6 74072206 74072236 -115207318 + L2 LINE L2 3101 3128 -185 1820 170 41 88 chr6 74072236 74072485 -115207069 + MLT1C LTR MaLR 4 220 -247 1808 158 10 10 chr6 74072485 74072783 -115206771 + AluSp SINE Alu 1 298 -15 1820 170 41 88 chr6 74072783 74073020 -115206534 + MLT1C LTR MaLR 220 467 0 545 319 81 45 chr6 74073020 74073179 -115206375 + L2 LINE L2 3128 3310 -3 1115 103 5 11 chr6 74073199 74073384 -115206170 - L1MA4A LINE L1 -2 6301 6118 321 309 65 0 chr6 74075297 74075436 -115204118 + MIR SINE MIR 84 231 -31 1584 205 10 3 chr6 74075482 74075785 -115203769 - AluJo SINE Alu -7 305 1 204 296 222 0 chr6 74075862 74076024 -115203530 - L2 LINE L2 0 3313 3116 815 144 23 8 chr6 74076826 74076958 -115202596 + AluSg/x SINE Alu 166 299 -13 1627 109 4 4 chr6 74076991 74077221 -115202333 - AluSq SINE Alu 0 313 84 672 118 0 0 chr6 74077433 74077526 -115202028 + AluJ/FLAM SINE Alu 1 93 -219 291 232 0 0 chr6 74077529 74077585 -115201969 - AluS SINE Alu -246 57 2 2195 112 0 16 chr6 74077596 74077901 -115201653 - AluSx SINE Alu -12 300 1 765 232 26 0 chr6 74077912 74078067 -115201487 - MER5C DNA MER1_type -164 160 2 1533 196 17 0 chr6 74078623 74078914 -115200640 - AluJo SINE Alu -16 296 1 1256 138 0 0 chr6 74078934 74079144 -115200410 - L1MA4 LINE L1 -11 6289 6080 583 224 6 26 chr6 74079154 74079310 -115200244 - MLT1G1 LTR MaLR 0 567 415 1005 226 33 26 chr6 74079408 74079714 -115199840 - MLT1G1 LTR MaLR -289 266 1 21 0 0 0 chr6 74080103 74080124 -115199430 + AT_rich Low_complexity Low_complexity 1 21 0 891 218 12 31 chr6 74080990 74081247 -115198307 - L1MD3 LINE L1 -15 7980 7729 259 250 33 0 chr6 74081435 74081495 -115198059 + MARNA DNA Mariner 152 213 -373 536 245 34 108 chr6 74081919 74082449 -115197105 - L1MC5 LINE L1 -72 7889 7399 1363 128 124 64 chr6 74082571 74082865 -115196689 + AluSx SINE Alu 1 310 0 1089 299 33 51 chr6 74082956 74083507 -115196047 + L2 LINE L2 2083 2623 -691 552 288 63 44 chr6 74083609 74083925 -115195629 + L1M4 LINE L1 3146 3467 -2679 856 200 22 5 chr6 74083925 74084110 -115195444 + L1M4 LINE L1 5420 5607 -571 2012 141 0 26 chr6 74084110 74084415 -115195139 + AluSx SINE Alu 1 297 -15 25 65 0 0 chr6 74084800 74084846 -115194708 + AT_rich Low_complexity Low_complexity 1 46 0 243 188 0 0 chr6 74085046 74085094 -115194460 - Alu SINE Alu -251 48 1 2549 55 0 19 chr6 74085103 74085415 -115194139 - AluY SINE Alu -5 306 1 258 309 24 40 chr6 74085650 74085776 -115193778 + L2 LINE L2 2972 3095 -177 666 241 174 5 chr6 74085834 74086029 -115193525 + MIR SINE MIR 32 259 -3 244 305 40 80 chr6 74086077 74086228 -115193326 + L2 LINE L2 3125 3269 -3 2149 112 7 7 chr6 74086776 74087079 -115192475 + AluSx SINE Alu 1 303 -9 317 289 88 11 chr6 74087454 74087596 -115191958 - MIR3 SINE MIR -66 142 3 639 236 79 6 chr6 74087760 74087938 -115191616 - MER46C DNA MER2_type -23 315 125 2163 106 27 0 chr6 74087938 74088231 -115191323 + AluSx SINE Alu 1 301 -11 2195 117 3 0 chr6 74089204 74089504 -115190050 - AluSx SINE Alu -11 301 1 22 0 0 0 chr6 74091897 74091919 -115187635 + AT_rich Low_complexity Low_complexity 1 22 0 972 189 16 5 chr6 74092852 74093037 -115186517 - AluSx SINE Alu -125 187 1 324 64 0 0 chr6 74093332 74093379 -115186175 + (CA)n Simple_repeat Simple_repeat 1 47 0 914 217 32 23 chr6 74093426 74093643 -115185911 + AluJo SINE Alu 2 220 -92 1389 126 16 0 chr6 74093767 74093957 -115185597 + AluSq SINE Alu 95 287 -26 1970 120 13 20 chr6 74094076 74094375 -115185179 + AluSx SINE Alu 1 297 -15 1498 201 6 3 chr6 74095641 74095979 -115183575 - L1M4 LINE L1 -1145 5001 4663 227 289 120 0 chr6 74096237 74096379 -115183175 - L1M4 LINE L1 -1959 4187 4029 325 367 26 53 chr6 74096462 74096661 -115182893 - L2 LINE L2 -339 2975 2783 2258 120 0 0 chr6 74096661 74096962 -115182592 - AluSx SINE Alu -7 305 5 325 367 26 53 chr6 74096962 74097026 -115182528 - L2 LINE L2 -531 2783 2719 207 330 34 23 chr6 74097121 74097209 -115182345 + L2 LINE L2 2891 2979 -293 1913 107 7 11 chr6 74097849 74098121 -115181433 - AluSx SINE Alu -41 271 1 247 254 16 40 chr6 74098813 74098939 -115180615 + CT-rich Low_complexity Low_complexity 5 127 0 1420 40 0 96 chr6 74099102 74099301 -115180253 - AluSg SINE Alu -130 180 1 482 281 18 12 chr6 74099589 74099872 -115179682 - MLT1J1 LTR MaLR -117 329 1 661 276 96 47 chr6 74099903 74100849 -115178705 - L1M3 LINE L1 -630 5541 4549 594 222 76 10 chr6 74100940 74101138 -115178416 + L1MC2 LINE L1 6084 6294 -50 1359 199 49 23 chr6 74101493 74101759 -115177795 - AluJb SINE Alu -39 273 1 2208 104 3 3 chr6 74101767 74102065 -115177489 - AluSp SINE Alu -15 298 1 2005 122 39 3 chr6 74102130 74102416 -115177138 + AluSq SINE Alu 5 300 -13 1668 117 0 4 chr6 74102719 74102950 -115176604 + AluSg/x SINE Alu 79 308 -2 5806 107 66 10 chr6 74103114 74104109 -115175445 - L1MA2 LINE L1 0 6304 5254 2078 102 0 0 chr6 74104216 74104491 -115175063 + AluSx SINE Alu 1 275 -37 415 185 26 106 chr6 74104501 74104652 -115174902 - MER46C DNA MER2_type -199 139 1 885 174 0 31 chr6 74105306 74105501 -115174053 - AluSq SINE Alu -124 189 1 265 299 11 11 chr6 74106823 74106910 -115172644 + MIR SINE MIR 170 256 -6 806 197 101 5 chr6 74107105 74107323 -115172231 - Charlie1 DNA MER1_type -181 2580 2342 312 143 0 0 chr6 74109565 74109621 -115169933 + (A)n Simple_repeat Simple_repeat 1 56 0 670 267 112 13 chr6 74110025 74110257 -115169297 + MIR SINE MIR 2 256 -6 710 315 56 0 chr6 74110761 74110993 -115168561 + MIR SINE MIR 5 249 -13 190 365 16 0 chr6 74111009 74111072 -115168482 + MIR SINE MIR 6 69 -193 298 171 117 90 chr6 74111145 74111256 -115168298 + MIR SINE MIR 94 207 -55 724 176 160 27 chr6 74111256 74111444 -115168110 - MER20 DNA MER1_type 0 219 7 339 317 124 30 chr6 74111616 74111818 -115167736 + L2 LINE L2 2904 3124 -189 411 21 0 0 chr6 74111970 74112018 -115167536 + (TG)n Simple_repeat Simple_repeat 2 49 0 188 313 82 75 chr6 74112269 74112403 -115167151 - L2 LINE L2 0 3313 3179 447 137 0 0 chr6 74112984 74113057 -115166497 + (CA)n Simple_repeat Simple_repeat 2 74 0 21 57 0 0 chr6 74114415 74114450 -115165104 + AT_rich Low_complexity Low_complexity 1 35 0 309 250 11 33 chr6 74114450 74114542 -115165012 - L1MC4 LINE L1 -1339 6703 6614 661 162 37 120 chr6 74114927 74114992 -115164562 + MIR SINE MIR 67 136 -126 2454 71 7 0 chr6 74114992 74115301 -115164253 - AluSp SINE Alu 0 313 3 661 162 37 120 chr6 74115301 74115426 -115164128 + MIR SINE MIR 136 241 -21 926 291 79 28 chr6 74117022 74117655 -115161899 - HAL1 LINE L1 -743 1764 1100 2093 88 64 0 chr6 74117655 74117938 -115161616 - AluSg SINE Alu -9 301 1 226 191 15 15 chr6 74118028 74118096 -115161458 + GA-rich Low_complexity Low_complexity 1 68 0 286 303 51 56 chr6 74118210 74118388 -115161166 - L2 LINE L2 -836 2478 2302 1439 137 14 28 chr6 74118647 74118931 -115160623 - AluSc SINE Alu -19 280 1 2519 43 0 0 chr6 74119184 74119483 -115160071 - AluY SINE Alu -12 299 1 21 71 0 0 chr6 74119797 74119839 -115159715 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr6 74120136 74120159 -115159395 + AT_rich Low_complexity Low_complexity 1 23 0 213 342 184 7 chr6 74121162 74121314 -115158240 - MIR SINE MIR -48 214 36 823 230 7 0 chr6 74121459 74121611 -115157943 + FRAM SINE Alu 2 154 -12 640 214 0 8 chr6 74121867 74121993 -115157561 + L2 LINE L2 3189 3313 0 665 255 88 46 chr6 74122472 74122688 -115156866 + MIR SINE MIR 2 226 -36 803 136 66 3 chr6 74122688 74122947 -115156607 + MLT1B LTR MaLR 1 341 -49 317 337 0 0 chr6 74123457 74123546 -115156008 - L1MC4 LINE L1 -1340 6702 6614 * 335 289 0 0 chr6 74123484 74123574 -115155980 + L1MC4 LINE L1 6614 6703 -1339 311 322 0 0 chr6 74123547 74123634 -115155920 - L1MC4 LINE L1 -1340 6702 6616 * 22 35 0 0 chr6 74123870 74123899 -115155655 + AT_rich Low_complexity Low_complexity 1 29 0 182 185 259 37 chr6 74125118 74125199 -115154355 - MIR SINE MIR -113 149 51 2069 121 13 3 chr6 74125253 74125551 -115154003 - AluSx SINE Alu -11 301 1 291 368 86 0 chr6 74125751 74125868 -115153686 + L2 LINE L2 3146 3272 0 2070 101 36 39 chr6 74126040 74126346 -115153208 - AluSc SINE Alu -2 307 3 2413 97 0 7 chr6 74126357 74126666 -115152888 - AluSx SINE Alu -5 307 1 2583 128 22 27 chr6 74127274 74127721 -115151833 + MER65A LTR ERV1 1 445 0 2245 69 3 3 chr6 74128157 74128447 -115151107 - AluY SINE Alu -21 290 1 1277 107 19 0 chr6 74128447 74128653 -115150901 - L1P LINE L1 -781 5365 5156 1913 133 0 25 chr6 74128656 74128941 -115150613 + AluSx SINE Alu 25 302 -10 2773 148 55 66 chr6 74129134 74129411 -115150143 - L1MA9 LINE L1 0 6312 6033 2114 135 0 0 chr6 74129411 74129707 -115149847 - AluSq SINE Alu -17 296 1 2773 148 55 66 chr6 74129707 74130157 -115149397 - L1MA9 LINE L1 -279 6033 5593 324 197 13 0 chr6 74130160 74130236 -115149318 + L1MC4a LINE L1 6413 6489 -1319 192 179 0 0 chr6 74130237 74130276 -115149278 + T-rich Low_complexity Low_complexity 1 39 0 606 218 5 18 chr6 74130276 74130492 -115149062 + L1MC4a LINE L1 6478 6795 -1013 2175 107 37 3 chr6 74130493 74130792 -115148762 - AluSx SINE Alu -3 309 1 192 167 0 0 chr6 74131078 74131108 -115148446 + L2 LINE L2 2940 2969 -303 21 71 0 0 chr6 74131287 74131329 -115148225 + AT_rich Low_complexity Low_complexity 1 42 0 27 49 0 0 chr6 74131356 74131397 -115148157 + AT_rich Low_complexity Low_complexity 1 41 0 325 299 77 85 chr6 74131421 74131857 -115147697 + L1M4c LINE L1 938 1540 -1203 1986 123 39 3 chr6 74132069 74132354 -115147200 - AluSp SINE Alu -18 295 1 876 222 12 31 chr6 74133351 74133608 -115145946 - L1MD3 LINE L1 -15 7980 7729 275 250 25 12 chr6 74133796 74133876 -115145678 + MARNA DNA Mariner 152 232 -354 206 245 0 20 chr6 74134017 74134066 -115145488 + L2 LINE L2 3265 3312 -1 235 325 16 24 chr6 74134249 74134375 -115145179 + MARNA DNA Mariner 373 497 -89 21 89 0 0 chr6 74134771 74134827 -115144727 + AT_rich Low_complexity Low_complexity 1 56 0 387 305 23 0 chr6 74135180 74135311 -115144243 - L1ME1 LINE L1 -74 6092 5959 1610 149 42 14 chr6 74135314 74135603 -115143951 - AluJb SINE Alu -14 298 2 194 330 163 15 chr6 74135685 74135888 -115143666 + MIR SINE MIR 22 254 -8 198 0 0 0 chr6 74137233 74137255 -115142299 + (T)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr6 74137262 74137283 -115142271 + AT_rich Low_complexity Low_complexity 1 21 0 252 86 0 0 chr6 74137290 74137325 -115142229 + (T)n Simple_repeat Simple_repeat 1 35 0 507 208 7 107 chr6 74137459 74137608 -115141946 + MER94 DNA DNA 1 134 0 901 169 119 51 chr6 74137754 74138049 -115141505 + MER33 DNA MER1_type 5 319 -5 21 82 0 0 chr6 74138375 74138424 -115141130 + AT_rich Low_complexity Low_complexity 1 49 0 357 24 0 0 chr6 74139506 74139548 -115140006 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 734 150 0 8 chr6 74139550 74139670 -115139884 - FLAM_C SINE Alu -24 119 1 5174 181 65 55 chr6 74141540 74141781 -115137773 - L1MA5 LINE L1 -12 6288 6051 2200 124 0 0 chr6 74141781 74142088 -115137466 - AluSx SINE Alu -5 307 1 5174 181 65 55 chr6 74142088 74144709 -115134845 - L1MA5 LINE L1 -249 6051 3481 449 289 113 68 chr6 74145034 74145316 -115134238 + L3 LINE CR1 1230 1529 -48 1780 149 0 62 chr6 74145316 74145502 -115134052 - AluJb SINE Alu -9 303 144 2111 110 0 43 chr6 74145502 74145803 -115133751 - AluSp SINE Alu -25 288 1 1780 149 0 62 chr6 74145803 74145939 -115133615 - AluJb SINE Alu -168 144 1 449 289 113 68 chr6 74145939 74145967 -115133587 + L3 LINE CR1 1529 1554 -23 799 141 0 15 chr6 74146234 74146369 -115133185 - FLAM_C SINE Alu 0 133 1 731 285 71 15 chr6 74147177 74147503 -115132051 - HAL1 LINE L1 -882 1625 1282 2229 144 27 64 chr6 74147716 74148167 -115131387 - Tigger2a DNA MER2_type 0 434 1 458 281 133 91 chr6 74148175 74148573 -115130981 - HAL1 LINE L1 -1560 947 533 302 299 118 24 chr6 74148763 74148890 -115130664 - HAL1 LINE L1 -2363 144 6 2196 154 12 59 chr6 74149101 74149135 -115130419 - MLT2D LTR ERVL -9 405 371 405 0 0 0 chr6 74149135 74149180 -115130374 + (TG)n Simple_repeat Simple_repeat 2 46 0 2196 154 12 59 chr6 74149180 74149567 -115129987 - MLT2D LTR ERVL -43 371 4 645 90 139 0 chr6 74149567 74149689 -115129865 + L1MA8 LINE L1 6146 6284 -7 372 282 34 54 chr6 74149938 74150020 -115129534 - MIR SINE MIR -31 231 152 1196 129 71 22 chr6 74150020 74150245 -115129309 - MER46A DNA MER2_type 0 236 1 372 282 34 54 chr6 74150245 74150311 -115129243 - MIR SINE MIR -110 152 86 184 311 0 49 chr6 74150784 74150845 -115128709 - MIR3 SINE MIR -54 154 97 397 303 9 37 chr6 74150885 74150994 -115128560 - L2 LINE L2 -18 3254 3149 1375 214 50 57 chr6 74151105 74151525 -115128029 + LTR40c LTR ERVL 44 460 -5 23 33 0 0 chr6 74151597 74151627 -115127927 + AT_rich Low_complexity Low_complexity 1 30 0 2216 133 18 0 chr6 74152320 74152651 -115126903 + MER1B DNA MER1_type 1 337 0 1155 298 101 24 chr6 74154074 74154541 -115125013 - MLT1J LTR MaLR -1 510 8 21 71 0 0 chr6 74155035 74155077 -115124477 + AT_rich Low_complexity Low_complexity 1 42 0 1214 219 123 94 chr6 74155101 74155899 -115123655 - Charlie7 DNA MER1_type -274 2338 1510 2107 128 3 10 chr6 74155899 74156211 -115123343 - AluSx SINE Alu -2 310 1 1214 219 123 94 chr6 74156211 74156297 -115123257 - Charlie7 DNA MER1_type -1102 1510 1428 316 281 188 12 chr6 74156299 74156459 -115123095 - Charlie7 DNA MER1_type -2311 301 114 23 33 0 0 chr6 74156824 74156854 -115122700 + AT_rich Low_complexity Low_complexity 1 30 0 1328 166 32 24 chr6 74156909 74157162 -115122392 + MER2 DNA MER2_type 2 256 -89 2053 113 0 0 chr6 74157178 74157452 -115122102 - AluSx SINE Alu -16 296 23 714 167 9 0 chr6 74157452 74157566 -115121988 - AluJo/FLAM SINE Alu -197 115 1 23 0 0 0 chr6 74157743 74157766 -115121788 + AT_rich Low_complexity Low_complexity 1 23 0 236 266 73 16 chr6 74157766 74157890 -115121664 - L1MC4 LINE L1 0 8042 7912 237 174 174 20 chr6 74157931 74158029 -115121525 - L1MC5 LINE L1 -237 7724 7612 517 267 160 22 chr6 74158209 74158634 -115120920 - L1MC5 LINE L1 -547 7495 7056 1767 134 24 31 chr6 74158770 74159062 -115120492 - AluJb SINE Alu -22 290 1 2226 79 0 58 chr6 74160678 74161007 -115118547 - AluY SINE Alu 0 311 2 376 259 28 70 chr6 74161127 74161270 -115118284 - L2 LINE L2 0 3313 3177 447 235 59 10 chr6 74161667 74161769 -115117785 - L2 LINE L2 -5 3308 3202 413 203 0 0 chr6 74161778 74161857 -115117697 + MADE1 DNA Mariner 1 79 -1 249 325 25 49 chr6 74161895 74162058 -115117496 - L2 LINE L2 -225 3088 2930 1705 108 0 4 chr6 74162164 74162417 -115117137 - AluSc SINE Alu 0 302 51 1120 103 0 0 chr6 74162417 74162563 -115116991 - AluSc SINE Alu -163 146 1 21 57 0 0 chr6 74162656 74162691 -115116863 + AT_rich Low_complexity Low_complexity 1 35 0 2778 114 16 7 chr6 74163076 74163506 -115116048 + MER57B LTR ERV1 1 434 0 206 204 0 19 chr6 74164704 74164758 -115114796 + (TA)n Simple_repeat Simple_repeat 2 54 0 2317 267 97 41 chr6 74166612 74167948 -115111606 - L2 LINE L2 0 3313 1914 258 226 53 89 chr6 74168099 74168289 -115111265 - L1ME4a LINE L1 -22 6099 5917 2422 91 7 0 chr6 74168363 74168671 -115110883 + AluSx SINE Alu 1 310 -2 190 194 0 0 chr6 74168843 74168874 -115110680 + MIR SINE MIR 4 34 -228 222 331 108 39 chr6 74169210 74169340 -115110214 + L3b LINE CR1 1422 1560 -23 572 217 90 42 chr6 74169354 74169520 -115110034 - MIR SINE MIR -1 261 88 239 271 0 0 chr6 74169868 74169927 -115109627 + T-rich Low_complexity Low_complexity 1 59 0 4338 262 120 41 chr6 74170748 74172993 -115106561 - HAL1 LINE L1 -74 2433 12 30 27 0 0 chr6 74173406 74173443 -115106111 + AT_rich Low_complexity Low_complexity 1 37 0 352 216 41 21 chr6 74173563 74173660 -115105894 + MER94 DNA DNA 2 100 -34 21 57 0 0 chr6 74174138 74174173 -115105381 + AT_rich Low_complexity Low_complexity 1 35 0 1831 127 21 25 chr6 74177559 74177842 -115101712 + AluSx SINE Alu 1 282 -30 1786 56 0 9 chr6 74178407 74178623 -115100931 + AluY SINE Alu 83 296 -15 518 92 28 37 chr6 74178642 74178751 -115100803 + (TCCCC)n Simple_repeat Simple_repeat 3 110 0 1921 140 10 3 chr6 74178753 74179046 -115100508 - AluSx SINE Alu -17 295 1 485 255 191 11 chr6 74183084 74183272 -115096282 - L3 LINE CR1 -12 1565 1344 181 304 65 109 chr6 74183530 74183745 -115095809 - L3 LINE CR1 -910 667 461 2045 130 17 0 chr6 74183745 74184037 -115095517 + AluSx SINE Alu 1 297 -15 181 304 65 109 chr6 74184037 74184051 -115095503 - L3 LINE CR1 -1116 461 448 252 289 165 8 chr6 74184254 74184375 -115095179 - L2 LINE L2 -15 3298 3159 23 54 0 0 chr6 74185192 74185229 -115094325 + AT_rich Low_complexity Low_complexity 1 37 0 406 326 144 45 chr6 74185347 74185743 -115093811 - L2 LINE L2 -50 3263 2829 796 290 244 10 chr6 74185941 74186424 -115093130 - L2 LINE L2 -502 2812 2217 1137 157 35 5 chr6 74186443 74186641 -115092913 + MER46A DNA MER2_type 33 236 0 2684 251 120 49 chr6 74186641 74186729 -115092825 - L2 LINE L2 -1102 2212 2132 1878 162 3 3 chr6 74186729 74187031 -115092523 - AluJo SINE Alu -10 302 1 2684 251 120 49 chr6 74187031 74188250 -115091304 - L2 LINE L2 -1182 2132 812 21 36 0 0 chr6 74189267 74189295 -115090259 + AT_rich Low_complexity Low_complexity 1 28 0 2132 111 3 0 chr6 74190002 74190300 -115089254 - AluSg SINE Alu -11 299 1 2000 135 0 0 chr6 74191001 74191283 -115088271 - AluSc SINE Alu -17 292 11 406 242 138 5 chr6 74191562 74191821 -115087733 + MER46C DNA MER2_type 11 337 -1 248 320 87 10 chr6 74192686 74192789 -115086765 + L2 LINE L2 3156 3266 -6 28 0 0 0 chr6 74192877 74192905 -115086649 + AT_rich Low_complexity Low_complexity 1 28 0 2192 126 0 0 chr6 74193288 74193589 -115085965 - AluSx SINE Alu -11 301 1 22 0 0 0 chr6 74194426 74194448 -115085106 + AT_rich Low_complexity Low_complexity 1 22 0 5603 142 18 40 chr6 74194479 74195504 -115084050 - L1MD3 LINE L1 0 7995 5334 2005 131 33 39 chr6 74195736 74196073 -115083481 + MER1B DNA MER1_type 2 336 -1 1924 149 7 3 chr6 74198275 74198584 -115080970 - AluSx SINE Alu -2 310 1 24 91 0 0 chr6 74198909 74198975 -115080579 + AT_rich Low_complexity Low_complexity 1 66 0 713 158 14 48 chr6 74200134 74200280 -115079274 - MLT1J LTR MaLR -344 167 27 186 278 0 19 chr6 74200419 74200473 -115079081 + L2 LINE L2 3261 3313 0 298 242 32 74 chr6 74201254 74201349 -115078205 + MIR SINE MIR 40 130 -78 224 282 13 13 chr6 74203842 74203920 -115075634 + (CAGAGA)n Simple_repeat Simple_repeat 6 83 0 367 266 47 23 chr6 74206584 74206712 -115072842 - MIR SINE MIR -124 138 8 1920 173 58 70 chr6 74206927 74207429 -115072125 - MLT1D LTR MaLR -7 498 3 1149 200 164 0 chr6 74208732 74209092 -115070462 - Charlie1 DNA MER1_type 0 2761 2343 1012 240 145 15 chr6 74210177 74210640 -115068914 - HAL1 LINE L1 0 2507 1985 381 290 157 60 chr6 74212578 74212826 -115066728 + L2 LINE L2 2813 3084 -188 529 250 49 54 chr6 74213298 74213502 -115066052 + L2 LINE L2 3111 3313 0 1752 126 56 4 chr6 74214206 74214521 -115065033 - AluSx SINE Alu 0 329 1 30 45 0 0 chr6 74214817 74214861 -115064693 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr6 74215516 74215542 -115064012 + AT_rich Low_complexity Low_complexity 1 26 0 313 300 0 106 chr6 74217919 74218003 -115061551 - MER5A DNA MER1_type -26 163 104 1526 134 38 102 chr6 74218003 74218242 -115061312 + AluJo SINE Alu 1 217 -95 240 111 0 0 chr6 74218242 74218278 -115061276 + (TGGGGG)n Simple_repeat Simple_repeat 2 37 0 1526 134 38 102 chr6 74218278 74218352 -115061202 + AluJo SINE Alu 217 294 -18 313 300 0 106 chr6 74218352 74218437 -115061117 - MER5A DNA MER1_type -85 104 12 1816 172 61 15 chr6 74218819 74219231 -115060323 - L1MC1 LINE L1 0 6333 5903 2070 195 32 13 chr6 74219232 74220062 -115059492 - L1MC1 LINE L1 -672 5672 4834 227 351 0 0 chr6 74220064 74220141 -115059413 - L1MC/D LINE L1 -555 5804 5728 1167 341 89 28 chr6 74220180 74220895 -115058659 + L2 LINE L2 2095 2853 -461 409 248 50 10 chr6 74220889 74220990 -115058564 + MER91C DNA MER1_type 15 119 -21 * 2210 105 0 3 chr6 74221156 74221442 -115058112 + AluSc SINE Alu 3 287 -22 290 332 117 10 chr6 74221502 74221809 -115057745 - L1MC/D LINE L1 -2172 5636 5297 676 283 148 43 chr6 74223216 74223615 -115055939 - L2 LINE L2 -64 3249 2809 1597 232 87 42 chr6 74223620 74223691 -115055863 - LTR40a LTR ERVL -2 517 451 2112 133 3 6 chr6 74223691 74224022 -115055532 - L1PA16 LINE L1 0 6166 5837 1597 232 87 42 chr6 74224022 74224399 -115055155 - LTR40a LTR ERVL -68 451 43 1893 118 26 10 chr6 74224399 74224704 -115054850 + L1PA16 LINE L1 5853 6162 -4 1597 232 87 42 chr6 74224704 74224749 -115054805 - LTR40a LTR ERVL -476 43 1 1574 255 80 9 chr6 74224786 74225249 -115054305 - L2 LINE L2 -549 2765 2270 380 286 52 9 chr6 74225249 74225459 -115054095 + L1M4 LINE L1 2560 2778 -3368 1094 235 88 115 chr6 74225725 74225908 -115053646 - L1MD3 LINE L1 -5 8035 7848 207 0 0 0 chr6 74225908 74225931 -115053623 + (CA)n Simple_repeat Simple_repeat 1 23 0 1094 235 88 115 chr6 74225931 74226524 -115053030 - L1MD3 LINE L1 -192 7848 7303 * 13963 25 0 1 chr6 74226509 74228154 -115051400 - L1PA3 LINE L1 -1002 5144 3501 7597 28 0 1 chr6 74228154 74229163 -115050391 + L1PA3 LINE L1 5146 6153 -2 687 236 33 123 chr6 74229200 74229623 -115049931 - L1MC4 LINE L1 -720 7322 6938 893 256 148 64 chr6 74229625 74230031 -115049523 - LTR16A LTR ERVL 0 450 11 2065 109 0 21 chr6 74230127 74230411 -115049143 - AluSg SINE Alu -31 279 2 2151 96 87 29 chr6 74230564 74230908 -115048646 + THE1B LTR MaLR 1 364 0 1985 210 24 13 chr6 74233158 74233610 -115045944 - L1MD2 LINE L1 -469 5890 5434 2403 94 0 0 chr6 74234973 74235282 -115044272 - AluSx SINE Alu -3 309 1 450 291 63 58 chr6 74235315 74235693 -115043861 + L1MEd LINE L1 89 468 -5737 511 276 106 0 chr6 74235710 74235880 -115043674 + MLT1C LTR MaLR 189 376 -91 254 288 91 25 chr6 74235893 74236091 -115043463 + L1MEd LINE L1 1544 1754 -4642 1424 235 14 29 chr6 74236153 74236502 -115043052 + MLT1A2 LTR MaLR 4 347 -27 12608 144 2 22 chr6 74236502 74238600 -115040954 - L1P LINE L1 -2157 3989 1933 230 35 0 0 chr6 74238615 74238644 -115040910 - L1M2 LINE L1 -538 5762 5734 * 334 140 0 0 chr6 74238641 74238691 -115040863 + L1P LINE L1 4737 4786 -1360 * 351 82 0 0 chr6 74238690 74238739 -115040815 - L1P5 LINE L1 -392 5764 5716 * 6487 192 5 1 chr6 74238728 74240000 -115039554 - L1P LINE L1 -2303 3843 2567 2479 152 23 5 chr6 74239997 74240393 -115039161 - L1PA13 LINE L1 -6384 403 1 * 1223 277 40 109 chr6 74240402 74241348 -115038206 - L1M3d LINE L1 -4725 1166 9 2439 63 0 10 chr6 74242923 74243224 -115036330 - AluY SINE Alu -10 301 4 214 224 0 35 chr6 74243441 74243499 -115036055 + T-rich Low_complexity Low_complexity 4 59 0 327 177 0 0 chr6 74243548 74243610 -115035944 + (TA)n Simple_repeat Simple_repeat 2 63 0 942 144 66 121 chr6 74243937 74244193 -115035361 - THE1C LTR MaLR -133 242 1 12269 69 27 1 chr6 74244626 74247088 -115032466 - L1PA6 LINE L1 -1 6153 3622 4586 89 26 18 chr6 74247088 74248203 -115031351 + MER11A LTR ERVK 1 1266 0 1749 186 3 10 chr6 74248324 74248635 -115030919 - AluJo SINE Alu -3 309 1 309 265 31 0 chr6 74249692 74249785 -115029769 - MIR SINE MIR -41 167 67 204 97 0 0 chr6 74251051 74251082 -115028472 + (TATG)n Simple_repeat Simple_repeat 2 32 0 * 559 59 12 12 chr6 74251081 74251166 -115028388 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 240 296 185 7 chr6 74251565 74251700 -115027854 - L2 LINE L2 -217 3055 2897 368 196 20 59 chr6 74253783 74253864 -115025690 - MER53 DNA DNA 0 189 111 2621 90 11 16 chr6 74253864 74254241 -115025313 + THE1C LTR MaLR 1 375 0 368 196 20 59 chr6 74254241 74254261 -115025293 - MER53 DNA DNA -78 111 92 279 0 0 0 chr6 74254303 74254334 -115025220 + (TA)n Simple_repeat Simple_repeat 2 32 0 255 190 0 0 chr6 74254386 74254444 -115025110 + CT-rich Low_complexity Low_complexity 1 58 0 22 35 0 0 chr6 74255256 74255285 -115024269 + AT_rich Low_complexity Low_complexity 1 29 0 2959 94 10 0 chr6 74255938 74256354 -115023200 - L1MA2 LINE L1 -2 6302 5883 965 209 52 5 chr6 74256530 74256741 -115022813 - MER58A DNA MER1_type -1 223 3 304 415 0 0 chr6 74256747 74256865 -115022689 + L2 LINE L2 3150 3267 -5 437 227 149 7 chr6 74257029 74257170 -115022384 - MIR SINE MIR 0 262 102 7070 200 14 7 chr6 74257329 74259670 -115019884 + L1PA16 LINE L1 3803 6161 -5 387 248 45 57 chr6 74260526 74260683 -115018871 - MIR SINE MIR -1 261 107 978 280 39 0 chr6 74262298 74262580 -115016974 - L1MC4 LINE L1 -1048 6994 6702 906 121 0 0 chr6 74262600 74262724 -115016830 - AluSg/x SINE Alu -19 293 170 514 282 137 40 chr6 74262990 74263582 -115015972 - L1MC4a LINE L1 -1451 6357 5709 363 269 43 0 chr6 74263600 74263693 -115015861 - L1MC4a LINE L1 -2275 5533 5437 2135 104 3 3 chr6 74264602 74264890 -115014664 - AluSq SINE Alu -14 299 12 1236 133 18 0 chr6 74264955 74265173 -115014381 + L1MA8 LINE L1 6067 6288 -3 340 179 54 45 chr6 74265217 74265329 -115014225 + Charlie1 DNA MER1_type 2460 2572 -189 310 132 0 0 chr6 74266259 74266312 -115013242 - L1MB7 LINE L1 -10 6174 6122 210 358 26 58 chr6 74266804 74266994 -115012560 + MIR SINE MIR 29 212 -50 317 219 68 82 chr6 74268713 74268859 -115010695 - L1ME4a LINE L1 -17 6104 5961 385 304 39 0 chr6 74269003 74269184 -115010370 - L1ME4a LINE L1 -336 5785 5598 23 54 0 0 chr6 74269369 74269406 -115010148 + AT_rich Low_complexity Low_complexity 1 37 0 2368 82 13 0 chr6 74269609 74269914 -115009640 + AluY SINE Alu 1 309 -2 18511 57 0 0 chr6 74270181 74273322 -115006232 - L1PA5 LINE L1 0 6154 3013 285 169 56 90 chr6 74273629 74273718 -115005836 - MLT1J1 LTR MaLR -34 412 327 * 552 280 60 0 chr6 74273717 74273867 -115005687 - MLT1J2 LTR MaLR -220 230 72 217 313 31 42 chr6 74273892 74273988 -115005566 - L2 LINE L2 -27 3286 3192 2075 204 40 40 chr6 74274244 74274763 -115004791 + MLT2B1 LTR ERVL 2 520 0 2013 148 138 5 chr6 74274841 74275218 -115004336 - MSTA LTR MaLR -1 427 1 865 187 127 0 chr6 74275370 74275536 -115004018 - MER5A DNA MER1_type -2 187 1 251 261 0 14 chr6 74275764 74275833 -115003721 + CT-rich Low_complexity Low_complexity 1 68 0 970 157 0 0 chr6 74276159 74276312 -115003242 + AluJb SINE Alu 1 153 -159 735 182 135 0 chr6 74276508 74276656 -115002898 + AluSg/x SINE Alu 132 299 -11 2279 73 17 0 chr6 74276839 74277140 -115002414 + L1PA8 LINE L1 5865 6170 -2 453 302 54 34 chr6 74277173 74277322 -115002232 - MER5A DNA MER1_type -34 155 4 307 304 97 65 chr6 74277846 74278093 -115001461 + L2 LINE L2 3041 3295 -18 2144 78 11 0 chr6 74278112 74278381 -115001173 + AluSp SINE Alu 21 292 -21 202 297 128 45 chr6 74278928 74279194 -115000360 + L2 LINE L2 2621 2908 -406 215 360 126 46 chr6 74279220 74279459 -115000095 + L2 LINE L2 2992 3249 -23 325 214 24 48 chr6 74280838 74280922 -114998632 - MER5B DNA MER1_type -96 82 1 2370 71 0 40 chr6 74281716 74282038 -114997516 + AluY SINE Alu 1 309 -2 207 346 70 64 chr6 74282074 74282574 -114996980 - L2 LINE L2 -462 2852 2350 954 43 0 0 chr6 74282909 74283026 -114996528 + L1PA5 LINE L1 6030 6146 -8 191 337 48 24 chr6 74283058 74283141 -114996413 + MER5B DNA MER1_type 64 148 -30 4328 190 51 60 chr6 74283191 74284223 -114995331 + MER45B DNA AcHobo 17 1039 -1 267 269 60 0 chr6 74284390 74284457 -114995097 - MIR SINE MIR -181 81 11 367 203 73 57 chr6 74284537 74284660 -114994894 + MIR SINE MIR 126 250 -12 21 0 0 0 chr6 74287043 74287064 -114992490 + AT_rich Low_complexity Low_complexity 1 21 0 582 86 0 0 chr6 74289373 74289454 -114990100 + (TA)n Simple_repeat Simple_repeat 1 81 0 2235 96 10 0 chr6 74289455 74289746 -114989808 - AluSq SINE Alu -19 294 1 23 54 0 0 chr6 74289748 74289785 -114989769 + AT_rich Low_complexity Low_complexity 1 37 0 2177 102 0 16 chr6 74290950 74291253 -114988301 + AluSx SINE Alu 1 298 -14 343 253 61 10 chr6 74291784 74291883 -114987671 + L2 LINE L2 3209 3312 -1 1398 52 0 0 chr6 74292735 74292909 -114986645 + L1PA8 LINE L1 5998 6171 -1 25 31 0 0 chr6 74292946 74292978 -114986576 + AT_rich Low_complexity Low_complexity 1 32 0 354 125 56 0 chr6 74293115 74293187 -114986367 + L1MA5A LINE L1 6222 6297 0 401 338 26 52 chr6 74294141 74294410 -114985144 - L2 LINE L2 -19 3294 3033 621 307 65 17 chr6 74294426 74294443 -114985111 - MIR SINE MIR -14 248 233 2388 92 3 0 chr6 74294443 74294748 -114984806 - AluSp SINE Alu -7 306 1 621 307 65 17 chr6 74294748 74294961 -114984593 - MIR SINE MIR -29 233 7 713 336 39 6 chr6 74294972 74295302 -114984252 - L2 LINE L2 -350 2964 2624 219 324 99 45 chr6 74295598 74295709 -114983845 - MIR SINE MIR -66 142 26 2197 125 16 19 chr6 74296035 74296411 -114983143 + THE1C LTR MaLR 1 375 0 181 296 0 0 chr6 74298517 74298561 -114980993 - L2 LINE L2 -40 3232 3189 252 355 66 12 chr6 74298631 74298797 -114980757 - L2 LINE L2 -335 2978 2804 719 164 148 11 chr6 74299249 74299432 -114980122 + Charlie5 DNA MER1_type 2374 2581 -31 22 35 0 0 chr6 74299872 74299901 -114979653 + AT_rich Low_complexity Low_complexity 1 29 0 2132 83 0 62 chr6 74300392 74300716 -114978838 + AluY SINE Alu 1 304 -7 390 318 61 0 chr6 74300938 74301086 -114978468 + MIR SINE MIR 5 161 -101 2853 312 107 39 chr6 74301149 74303008 -114976546 + L2 LINE L2 1237 3229 -84 2038 150 0 3 chr6 74303406 74303712 -114975842 - AluJb SINE Alu -7 305 1 610 255 137 24 chr6 74305598 74305810 -114973744 - MIR SINE MIR -6 256 21 22 56 0 0 chr6 74305877 74305913 -114973641 + AT_rich Low_complexity Low_complexity 1 36 0 351 259 139 0 chr6 74306832 74306940 -114972614 - LTR67 LTR ERVL 0 557 435 457 165 35 0 chr6 74307547 74307632 -114971922 - Charlie4 DNA MER1_type -1745 216 129 406 313 87 59 chr6 74307652 74308010 -114971544 - LTR33A LTR ERVL -48 475 108 272 290 28 0 chr6 74308204 74308311 -114971243 - ERVL LTR ERVL -455 5309 5200 1333 257 34 14 chr6 74308422 74308865 -114970689 - Charlie4a DNA MER1_type -22 486 35 858 162 57 20 chr6 74309026 74309391 -114970163 + MER74C LTR ERVL 2 458 -2 570 198 158 23 chr6 74309446 74309623 -114969931 + L2 LINE L2 3113 3313 0 398 316 109 40 chr6 74310015 74310488 -114969066 - ERVL LTR ERVL -852 4633 4160 469 286 100 31 chr6 74310520 74311258 -114968296 - L1M2 LINE L1 -661 5509 4766 22 0 0 0 chr6 74311320 74311342 -114968212 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr6 74311531 74311562 -114967992 + AT_rich Low_complexity Low_complexity 1 31 0 2121 124 7 0 chr6 74312545 74312844 -114966710 - AluSx SINE Alu -11 301 1 256 309 65 20 chr6 74313142 74313343 -114966211 - L1M2 LINE L1 -1956 4190 3981 412 305 103 77 chr6 74313451 74314317 -114965237 - L1M4 LINE L1 -2240 3906 3019 6664 203 154 11 chr6 74314905 74316721 -114962833 + L1PBa LINE L1 100 2175 -4688 1245 94 50 10 chr6 74366722 74366923 -114912631 + L1PA15 LINE L1 5955 6163 -2 487 284 82 67 chr6 74367008 74367334 -114912220 + L1MEd LINE L1 815 1149 -4970 2668 107 5 5 chr6 74367334 74367709 -114911845 - THE1C LTR MaLR 0 375 1 487 284 82 67 chr6 74367709 74367773 -114911781 + L1MEd LINE L1 1149 1211 -4908 3499 93 53 11 chr6 74367785 74368352 -114911202 - L1MA3 LINE L1 0 6305 5715 775 158 0 0 chr6 74368544 74368664 -114910890 + FLAM_C SINE Alu 1 120 -23 3720 178 39 41 chr6 74368695 74369523 -114910031 - LTR1B LTR ERV1 0 826 1 24 0 0 0 chr6 74369584 74369608 -114909946 + AT_rich Low_complexity Low_complexity 1 24 0 377 296 42 21 chr6 74370124 74370266 -114909288 - MIR SINE MIR -48 214 70 322 122 0 10 chr6 74370468 74370542 -114909012 - Alu SINE Alu -255 48 1 340 216 0 136 chr6 74370822 74370883 -114908671 - MER81 DNA DNA 0 114 77 2402 50 12 41 chr6 74370883 74371202 -114908352 + AluY SINE Alu 2 311 0 340 216 0 136 chr6 74371202 74371265 -114908289 - MER81 DNA DNA -37 77 7 15249 209 29 24 chr6 74372001 74372822 -114906732 + L1P4 LINE L1 1164 1980 -4836 2325 84 0 3 chr6 74372822 74373120 -114906434 + AluY SINE Alu 1 297 -14 15249 209 29 24 chr6 74373120 74377604 -114901950 + L1P4 LINE L1 1980 6468 -348 773 290 40 60 chr6 74378293 74378696 -114900858 - MLT1J LTR MaLR -12 499 105 706 124 0 0 chr6 74379582 74379679 -114899875 - AluS SINE Alu -216 97 1 324 0 0 0 chr6 74380395 74380431 -114899123 + (T)n Simple_repeat Simple_repeat 1 36 0 827 238 81 19 chr6 74380534 74380744 -114898810 - MIR SINE MIR -21 241 19 23 0 0 0 chr6 74381412 74381435 -114898119 + AT_rich Low_complexity Low_complexity 1 23 0 399 342 59 38 chr6 74381729 74382068 -114897486 + LTR16C LTR ERVL 146 491 0 1045 332 94 40 chr6 74382252 74382923 -114896631 + L2 LINE L2 2149 2899 -414 1887 196 22 0 chr6 74382923 74383280 -114896274 + MLT1A1 LTR MaLR 1 365 0 1045 332 94 40 chr6 74383280 74383635 -114895919 + L2 LINE L2 2899 3233 -80 22 0 0 0 chr6 74383737 74383759 -114895795 + AT_rich Low_complexity Low_complexity 1 22 0 2359 104 0 0 chr6 74384977 74385285 -114894269 - AluSg SINE Alu -2 308 1 243 271 19 28 chr6 74386297 74386404 -114893150 + MLT1K LTR MaLR 11 116 -472 516 258 189 45 chr6 74386430 74386764 -114892790 + MLT1K LTR MaLR 196 577 -11 21 36 0 0 chr6 74388597 74388625 -114890929 + AT_rich Low_complexity Low_complexity 1 28 0 255 309 17 94 chr6 74389032 74389213 -114890341 + MER5A DNA MER1_type 1 167 -22 206 178 44 0 chr6 74390663 74390708 -114888846 + CT-rich Low_complexity Low_complexity 2 48 0 189 250 56 56 chr6 74390953 74391025 -114888529 + MIR SINE MIR 183 254 -8 631 197 35 64 chr6 74392682 74392703 -114886851 + LTR41 LTR ERVL 5 25 -770 2251 125 0 3 chr6 74392703 74393007 -114886547 + AluSx SINE Alu 2 304 -8 631 197 35 64 chr6 74393007 74393194 -114886360 + LTR41 LTR ERVL 25 231 -564 390 186 0 0 chr6 74393635 74393721 -114885833 + (TG)n Simple_repeat Simple_repeat 2 87 0 426 193 35 107 chr6 74393733 74393801 -114885753 + LTR41 LTR ERVL 590 661 -112 2154 123 3 3 chr6 74393801 74394102 -114885452 - AluSx SINE Alu -11 301 1 426 193 35 107 chr6 74394102 74394230 -114885324 + LTR41 LTR ERVL 661 772 -1 37192 76 14 3 chr6 74394328 74400424 -114879130 - L1PA5 LINE L1 0 6154 1 202 366 50 6 chr6 74400451 74400612 -114878942 - L2 LINE L2 -852 2462 2295 283 229 16 0 chr6 74401164 74401225 -114878329 + MER94 DNA DNA 72 133 -1 2637 86 101 12 chr6 74401405 74401780 -114877774 + MLT2A1 LTR ERVL 2 342 -102 276 30 0 0 chr6 74401780 74401813 -114877741 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 * 495 0 0 0 chr6 74401812 74401867 -114877687 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2637 86 101 12 chr6 74401813 74401898 -114877656 + MLT2A1 LTR ERVL 342 444 0 533 349 82 65 chr6 74403824 74404285 -114875269 - L2 LINE L2 0 3272 2804 188 244 114 23 chr6 74404522 74404653 -114874901 + L2 LINE L2 2782 2924 -390 232 350 33 8 chr6 74404947 74405067 -114874487 + LTR16C LTR ERVL 361 483 -8 275 279 103 79 chr6 74405109 74405399 -114874155 + L2 LINE L2 2919 3215 -98 239 324 0 0 chr6 74405520 74405591 -114873963 + L2 LINE L2 3242 3312 -1 613 231 77 22 chr6 74405825 74406007 -114873547 + L1ME3 LINE L1 5971 6162 0 201 203 51 51 chr6 74406924 74406983 -114872571 - L2 LINE L2 0 3272 3214 203 238 200 67 chr6 74407036 74407141 -114872413 + MER5A DNA MER1_type 2 120 -69 180 0 0 0 chr6 74408747 74408767 -114870787 + (T)n Simple_repeat Simple_repeat 1 20 0 30014 121 17 52 chr6 74408796 74415104 -114864450 + L1PA7 LINE L1 9 6086 -68 2019 142 64 0 chr6 74415204 74415548 -114864006 + Tigger2 DNA MER2_type 2353 2718 0 430 240 99 8 chr6 74416444 74416565 -114862989 + MLT1K LTR MaLR 457 588 0 750 135 98 0 chr6 74416837 74417000 -114862554 - L1MA8 LINE L1 -10 6281 6103 2013 133 9 28 chr6 74417022 74417339 -114862215 + AluSx SINE Alu 1 311 -1 2293 110 41 14 chr6 74417465 74417830 -114861724 - THE1C LTR MaLR 0 375 1 343 292 110 7 chr6 74418417 74418571 -114860983 - MIR3 SINE MIR -14 194 25 888 92 23 0 chr6 74419229 74419360 -114860194 + L1MA3 LINE L1 6172 6305 0 472 306 50 22 chr6 74419545 74419725 -114859829 + MIR SINE MIR 4 188 -74 32 57 0 0 chr6 74419748 74419801 -114859753 + AT_rich Low_complexity Low_complexity 1 53 0 222 171 0 0 chr6 74420972 74421013 -114858541 + CT-rich Low_complexity Low_complexity 4 44 0 201 186 35 47 chr6 74421209 74421295 -114858259 + (TA)n Simple_repeat Simple_repeat 2 86 0 297 338 133 33 chr6 74421642 74421882 -114857672 + L2 LINE L2 2818 3081 -191 189 107 0 0 chr6 74421920 74421948 -114857606 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 222 300 86 0 chr6 74421975 74422045 -114857509 + L2 LINE L2 3104 3179 -93 452 279 52 0 chr6 74422048 74422184 -114857370 + MER82 DNA MER2_type 1 143 -510 2229 82 0 3 chr6 74422267 74422597 -114856957 + AluSg1 SINE Alu 1 329 0 2193 84 67 6 chr6 74422602 74422969 -114856585 + LTR7 LTR ERV1 1 450 0 19663 141 11 18 chr6 74422969 74426669 -114852885 + HERVH LTR ERV1 1 3993 -3720 5743 149 8 4 chr6 74426652 74427599 -114851955 + HERVH LTR ERV1 3993 5288 -1803 * 2185 168 10 0 chr6 74427596 74427983 -114851571 + HERVH LTR ERV1 5626 6016 -1697 * 3682 97 12 14 chr6 74427976 74428534 -114851020 + HERVH LTR ERV1 7157 7713 0 1964 103 76 6 chr6 74428534 74428898 -114850656 + LTR7 LTR ERV1 1 450 0 455 132 61 70 chr6 74428968 74429082 -114850472 - L1MA7 LINE L1 0 6291 6179 2036 205 28 35 chr6 74429430 74429888 -114849666 + MER82 DNA MER2_type 199 653 0 315 294 50 69 chr6 74430525 74430787 -114848767 - L2 LINE L2 0 3313 3057 340 107 0 36 chr6 74430788 74430844 -114848710 + MSTC LTR MaLR 1 54 -374 8707 139 56 13 chr6 74430844 74431429 -114848125 + Tigger1 DNA MER2_type 856 1415 -1003 6487 94 11 0 chr6 74431429 74432414 -114847140 + L1PA8 LINE L1 5178 6172 0 8707 139 56 13 chr6 74432414 74433327 -114846227 + Tigger1 DNA MER2_type 1415 2418 0 1377 207 108 24 chr6 74433414 74433569 -114845985 - MLT1A1 LTR MaLR -2 363 222 2148 108 55 102 chr6 74433569 74434041 -114845513 + LTR7 LTR ERV1 1 450 0 1377 207 108 24 chr6 74434041 74434218 -114845336 - MLT1A1 LTR MaLR -143 222 3 7206 42 1 15 chr6 74434321 74435660 -114843894 + L1PA4 LINE L1 4828 6153 -2 283 256 68 116 chr6 74438275 74438482 -114841072 + MIR SINE MIR 20 216 -46 2423 139 10 5 chr6 74438490 74438893 -114840661 + L1PB1 LINE L1 5745 6149 -2 688 268 104 14 chr6 74438979 74439199 -114840355 + MIR SINE MIR 23 262 0 2432 195 71 10 chr6 74439243 74439761 -114839793 - MER44D DNA MER2_type 0 605 1 205 286 0 0 chr6 74440291 74440340 -114839214 - MIR SINE MIR -94 114 66 183 291 159 13 chr6 74441460 74441611 -114837943 + L2 LINE L2 3115 3287 -26 724 263 121 36 chr6 74442117 74442341 -114837213 - MER45C DNA AcHobo 0 953 711 * 851 311 32 14 chr6 74442331 74442701 -114836853 - MER45C DNA AcHobo -542 411 1 2217 108 0 0 chr6 74442729 74443025 -114836529 + AluY SINE Alu 1 296 -15 724 163 144 98 chr6 74443225 74443502 -114836052 - LTR37B LTR ERV1 -4 464 175 219 326 61 14 chr6 74444251 74444398 -114835156 + L3b LINE CR1 1335 1488 -95 236 304 14 14 chr6 74444707 74444776 -114834778 - MIR3 SINE MIR -49 159 91 4176 50 5 32 chr6 74444917 74445473 -114834081 - L1PA7 LINE L1 -1 6153 5613 427 82 0 0 chr6 74445574 74445635 -114833919 - L1PA7 LINE L1 -760 5412 5352 306 42 0 21 chr6 74445638 74445686 -114833868 + L1P LINE L1 5261 5307 -865 554 269 21 0 chr6 74447965 74448105 -114831449 + LTR37B LTR ERV1 7 149 -319 3050 174 46 29 chr6 74448105 74448692 -114830862 - MER7C DNA MER2_type 0 602 6 912 221 35 74 chr6 74448697 74449036 -114830518 + LTR37B LTR ERV1 143 468 0 533 218 20 20 chr6 74449080 74449227 -114830327 - MER69 DNA AcHobo -1 2525 2379 285 128 0 0 chr6 74449298 74449337 -114830217 - LTR8 LTR ERV1 -106 585 547 1151 125 4 88 chr6 74449448 74449688 -114829866 - L1MA4 LINE L1 -19 6281 6062 226 111 130 37 chr6 74449786 74449840 -114829714 - MER69 DNA AcHobo -118 59 1 883 209 85 24 chr6 74451396 74451607 -114827947 + MER58A DNA MER1_type 1 224 0 1863 245 50 55 chr6 74454478 74455074 -114824480 - MLT1E LTR MaLR 0 593 1 213 186 17 17 chr6 74456261 74456320 -114823234 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 1816 181 32 97 chr6 74457247 74457743 -114821811 + MLT1C LTR MaLR 1 464 -3 6528 82 6 6 chr6 74457982 74459218 -114820336 + L1PA14 LINE L1 4918 6158 -3 22 0 0 0 chr6 74461823 74461845 -114817709 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 74462434 74462455 -114817099 + AT_rich Low_complexity Low_complexity 1 21 0 921 350 53 30 chr6 74462478 74463093 -114816461 + L1M3d LINE L1 421 1084 -5219 243 413 13 45 chr6 74463165 74463320 -114816234 + L1M3d LINE L1 934 1083 -5220 1984 262 154 36 chr6 74463494 74464585 -114814969 + L1MB1 LINE L1 800 2014 -4370 422 66 26 66 chr6 74464585 74464661 -114814893 - L1PA16 LINE L1 0 6166 6094 1984 262 154 36 chr6 74464661 74465006 -114814548 + L1MB1 LINE L1 2014 2317 -4067 338 227 0 0 chr6 74465008 74465083 -114814471 + L1MB1 LINE L1 2464 2538 -3844 2076 212 89 14 chr6 74465259 74465910 -114813644 + L1MB1 LINE L1 4487 5186 -1196 4010 148 26 79 chr6 74466649 74467529 -114812025 + L1MB1 LINE L1 5180 6003 -401 1931 157 24 29 chr6 74467529 74467911 -114811643 + L1MA7 LINE L1 5909 6288 -3 4010 148 26 79 chr6 74467911 74468228 -114811326 + L1MB1 LINE L1 6003 6335 -69 295 80 0 0 chr6 74468318 74468368 -114811186 + L1PA8 LINE L1 6122 6171 -1 896 188 84 24 chr6 74468426 74468639 -114810915 + MIR SINE MIR 10 235 -27 274 278 105 23 chr6 74470013 74470146 -114809408 + MIR SINE MIR 119 262 0 263 274 57 0 chr6 74471807 74471913 -114807641 + L1ME4a LINE L1 5994 6105 -16 388 200 0 150 chr6 74471926 74471989 -114807565 + MER81 DNA DNA 7 45 -69 1540 167 13 41 chr6 74471989 74472307 -114807247 - AluY SINE Alu 0 311 3 388 200 0 150 chr6 74472307 74472363 -114807191 + MER81 DNA DNA 45 108 -6 474 87 58 0 chr6 74472520 74472589 -114806965 + L1PA7 LINE L1 6074 6146 -8 1613 216 43 52 chr6 74473037 74473432 -114806122 + MLT1C LTR MaLR 8 401 -66 2068 97 0 21 chr6 74473432 74473749 -114805805 - AluY SINE Alu 0 311 1 1613 216 43 52 chr6 74473749 74473816 -114805738 + MLT1C LTR MaLR 401 467 0 251 331 201 0 chr6 74474199 74474338 -114805216 - MIR3 SINE MIR -1 207 41 3159 161 51 3 chr6 74475241 74475845 -114803709 - L1MC1 LINE L1 0 6333 5701 1397 215 126 30 chr6 74476096 74476557 -114802997 + MLT1D LTR MaLR 1 505 0 2137 122 0 13 chr6 74477059 74477371 -114802183 + AluSg SINE Alu 1 308 -2 466 346 109 36 chr6 74478420 74478723 -114800831 + L2 LINE L2 2948 3272 0 332 287 43 113 chr6 74479318 74479618 -114799936 + L1M4 LINE L1 379 657 -5667 1439 287 74 19 chr6 74479668 74480562 -114798992 + L1M4 LINE L1 657 1614 -4814 800 157 234 35 chr6 74480571 74480735 -114798819 - MER46A DNA MER2_type -2495 236 25 1899 167 0 10 chr6 74480735 74481046 -114798508 - AluSx SINE Alu -4 308 1 800 157 234 35 chr6 74481046 74481078 -114798476 - MER46A DNA MER2_type -2706 25 1 680 256 100 47 chr6 74481078 74481665 -114797889 + L1M4 LINE L1 1686 2394 -4213 846 287 248 2 chr6 74481697 74482101 -114797453 - L2 LINE L2 -1826 1488 986 318 271 208 27 chr6 74482409 74482630 -114796924 + L2 LINE L2 3046 3306 -7 429 289 48 24 chr6 74483517 74483683 -114795871 + MER69A DNA AcHobo 2 171 -6 1856 141 19 62 chr6 74483738 74484108 -114795446 - L1MB5 LINE L1 -10 6164 5811 2579 55 0 3 chr6 74484173 74484483 -114795071 - AluY SINE Alu -2 309 1 399 258 13 50 chr6 74485663 74485822 -114793732 + MER106B DNA MER1_type 907 1059 0 2329 130 35 98 chr6 74486483 74486843 -114792711 - L1PB4 LINE L1 0 6156 5775 189 0 0 0 chr6 74486843 74486864 -114792690 + (CA)n Simple_repeat Simple_repeat 2 22 0 2329 130 35 98 chr6 74486864 74486888 -114792666 - L1PB4 LINE L1 -381 5775 5751 261 0 0 0 chr6 74486888 74486917 -114792637 + (TG)n Simple_repeat Simple_repeat 2 30 0 2329 130 35 98 chr6 74486917 74487040 -114792514 - L1PB4 LINE L1 -405 5751 5680 1344 123 34 0 chr6 74487033 74487269 -114792285 + L1P5 LINE L1 5358 5601 -555 * 2223 120 0 0 chr6 74487293 74487602 -114791952 - AluSx SINE Alu -3 309 1 575 262 33 61 chr6 74488338 74488552 -114791002 - MER63A DNA MER1_type -1 209 2 732 254 12 6 chr6 74488556 74488725 -114790829 - MER5B DNA MER1_type -5 173 4 252 341 29 39 chr6 74488738 74488943 -114790611 - L2 LINE L2 -1042 2272 2070 259 314 234 0 chr6 74489045 74489169 -114790385 + L3 LINE CR1 1374 1526 -51 201 125 25 25 chr6 74490362 74490402 -114789152 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 208 374 211 0 chr6 74490710 74490833 -114788721 - L2 LINE L2 -8 3264 3116 25 0 0 0 chr6 74490868 74490893 -114788661 + AT_rich Low_complexity Low_complexity 1 25 0 1298 179 64 29 chr6 74491151 74491429 -114788125 - MER33 DNA MER1_type -2261 324 32 2319 110 85 15 chr6 74491429 74491829 -114787725 + MSTA LTR MaLR 1 428 0 1298 179 64 29 chr6 74491829 74491863 -114787691 - MER33 DNA MER1_type -2553 32 1 1957 200 57 7 chr6 74492180 74492639 -114786915 - L1MB7 LINE L1 -9 6175 5694 14002 120 30 10 chr6 74492645 74493279 -114786275 + Tigger1 DNA MER2_type 1 621 -1797 2145 108 3 23 chr6 74493279 74493584 -114785970 + AluSx SINE Alu 1 299 -13 14002 120 30 10 chr6 74493584 74495114 -114784440 + Tigger1 DNA MER2_type 621 2209 -209 1493 158 39 34 chr6 74495151 74495608 -114783946 - L1MB7 LINE L1 -597 5581 5118 206 340 0 0 chr6 74495985 74496035 -114783519 + (CGTG)n Simple_repeat Simple_repeat 2 51 0 189 0 0 0 chr6 74498164 74498185 -114781369 + (T)n Simple_repeat Simple_repeat 1 21 0 386 314 81 25 chr6 74499101 74499520 -114780034 + LTR33 LTR ERVL 55 516 -5 2353 80 3 13 chr6 74499730 74500044 -114779510 - AluY SINE Alu 0 311 1 180 231 46 138 chr6 74500407 74500537 -114779017 + MIR SINE MIR 66 183 -79 227 356 0 11 chr6 74500596 74500683 -114778871 + MIR3 SINE MIR 108 193 -15 1040 216 55 41 chr6 74500787 74501079 -114778475 + MLT1B LTR MaLR 95 390 0 2203 117 0 0 chr6 74501131 74501421 -114778133 + AluSx SINE Alu 2 291 -21 573 302 11 22 chr6 74501714 74501893 -114777661 + MIR3 SINE MIR 21 197 -11 31 26 0 0 chr6 74502391 74502429 -114777125 + AT_rich Low_complexity Low_complexity 1 38 0 1978 101 17 0 chr6 74502430 74502718 -114776836 - L1PA16 LINE L1 -9 6157 5865 350 287 37 37 chr6 74503451 74503587 -114775967 + MIR3 SINE MIR 70 205 -3 1540 70 78 53 chr6 74504386 74504490 -114775064 - L1PA8 LINE L1 -13 6159 6059 2284 96 0 3 chr6 74504490 74504793 -114774761 - AluY SINE Alu -9 302 1 1540 70 78 53 chr6 74504793 74504932 -114774622 - L1PA8 LINE L1 -113 6059 5910 472 226 79 51 chr6 74505913 74506090 -114773464 + MIR SINE MIR 22 203 -59 277 257 54 0 chr6 74506887 74506961 -114772593 + MIR SINE MIR 79 156 -106 485 283 0 8 chr6 74507201 74507321 -114772233 + L2 LINE L2 3189 3307 -6 249 33 0 0 chr6 74507375 74507405 -114772149 + (TG)n Simple_repeat Simple_repeat 1 30 0 899 154 6 0 chr6 74508953 74509115 -114770439 + L1MA7 LINE L1 6125 6287 -4 247 156 0 0 chr6 74509157 74509202 -114770352 - HAL1b LINE L1 -559 789 745 236 183 17 33 chr6 74509875 74509935 -114769619 + MER94 DNA DNA 40 98 -36 3191 151 3 86 chr6 74510482 74511182 -114768372 - L1MA5 LINE L1 -5 6295 5654 4223 159 41 61 chr6 74511504 74512086 -114767468 - MER21B LTR ERV1 -1 862 303 1887 108 97 0 chr6 74512086 74512354 -114767200 - AluSx SINE Alu -18 294 1 4223 159 41 61 chr6 74512354 74512651 -114766903 - MER21B LTR ERV1 -560 303 1 7439 32 6 0 chr6 74512765 74513702 -114765852 + L1PA4 LINE L1 5214 6155 0 416 310 16 0 chr6 74513956 74514085 -114765469 + L2 LINE L2 3183 3313 0 888 186 12 68 chr6 74514150 74514398 -114765156 + MLT1B LTR MaLR 1 234 -156 * 895 162 45 34 chr6 74514377 74514556 -114764998 + MLT1B LTR MaLR 187 367 -23 518 252 86 7 chr6 74514557 74514708 -114764846 - MIR SINE MIR -23 239 77 213 296 0 0 chr6 74515391 74515445 -114764109 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 501 17 0 0 chr6 74516130 74516188 -114763366 + (T)n Simple_repeat Simple_repeat 1 58 0 2330 54 0 4 chr6 74516332 74516612 -114762942 - AluY SINE Alu -32 279 1 340 118 73 9 chr6 74516777 74516842 -114762712 + MLT1A1 LTR MaLR 307 365 0 6644 131 68 7 chr6 74518503 74519609 -114759945 + Tigger2 DNA MER2_type 6 1178 -1540 7217 54 0 0 chr6 74519617 74520508 -114759046 - L1PA5 LINE L1 -1 6153 5263 4632 137 13 61 chr6 74520508 74521364 -114758190 + Tigger2 DNA MER2_type 1155 1969 -749 258 363 56 52 chr6 74621365 74621843 -114657711 + L2 LINE L2 2693 3250 -22 24 67 0 0 chr6 74622026 74622071 -114657483 + AT_rich Low_complexity Low_complexity 1 45 0 494 304 159 40 chr6 74623233 74623687 -114655867 + LTR33 LTR ERVL 14 521 0 188 366 89 11 chr6 74623867 74624058 -114655496 - L2 LINE L2 -1255 2059 1854 21 82 0 0 chr6 74624283 74624332 -114655222 + AT_rich Low_complexity Low_complexity 1 49 0 206 244 0 0 chr6 74624564 74624609 -114654945 + (TATG)n Simple_repeat Simple_repeat 2 46 0 274 373 81 42 chr6 74626293 74626529 -114653025 + L2 LINE L2 3027 3271 -1 360 0 0 0 chr6 74626645 74626685 -114652869 + (ATG)n Simple_repeat Simple_repeat 1 40 0 1905 177 103 47 chr6 74628153 74628520 -114651034 + MER67D LTR ERV1 2 404 -110 273 57 0 0 chr6 74628520 74628555 -114650999 + (CA)n Simple_repeat Simple_repeat 2 36 0 1905 177 103 47 chr6 74628555 74628673 -114650881 + MER67D LTR ERV1 404 514 0 745 282 99 45 chr6 74628794 74629277 -114650277 + MLT1J LTR MaLR 1 509 -2 325 276 131 25 chr6 74629407 74629682 -114649872 - L1M4 LINE L1 -1533 4613 4310 29 0 0 0 chr6 74629691 74629720 -114649834 + AT_rich Low_complexity Low_complexity 1 29 0 1527 166 29 16 chr6 74629764 74630072 -114649482 - L1MA3 LINE L1 0 6305 5994 705 194 7 0 chr6 74630075 74630219 -114649335 + L1 LINE L1 5053 5197 -949 1146 217 20 0 chr6 74630684 74630933 -114648621 - AluJb SINE Alu -58 254 1 29 104 0 0 chr6 74631184 74631290 -114648264 + AT_rich Low_complexity Low_complexity 1 106 0 180 291 36 0 chr6 74631769 74631815 -114647739 - L2 LINE L2 -1879 1435 1388 601 329 43 20 chr6 74631815 74632070 -114647484 + MIR SINE MIR 1 261 -1 1277 271 105 26 chr6 74633081 74633506 -114646048 - MLT1H LTR MaLR -2 547 74 1798 158 27 0 chr6 74633506 74633798 -114645756 + AluSx SINE Alu 1 300 -12 1277 271 105 26 chr6 74633798 74633877 -114645677 - MLT1H LTR MaLR -475 74 3 194 250 38 50 chr6 74634623 74634703 -114644851 + MIR SINE MIR 171 249 -13 623 245 72 32 chr6 74636881 74637130 -114642424 + L1MC4a LINE L1 5627 5885 -1923 606 314 67 24 chr6 74637356 74637684 -114641870 - L2 LINE L2 -612 2702 2361 434 296 61 29 chr6 74639742 74640022 -114639532 - L1ME3A LINE L1 -208 5962 5674 322 347 58 5 chr6 74640177 74640367 -114639187 - L1ME3A LINE L1 -819 5327 5128 1128 149 0 0 chr6 74640711 74640886 -114638668 - AluSg/x SINE Alu -5 307 133 204 40 0 0 chr6 74640972 74640997 -114638557 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3615 95 8 0 chr6 74641029 74641545 -114638009 - L1P LINE L1 -3870 2276 1757 394 290 173 43 chr6 74641546 74642007 -114637547 - L1ME3A LINE L1 -1539 4607 4097 330 269 21 0 chr6 74642064 74642157 -114637397 - L1ME3A LINE L1 -2161 3985 3891 186 43 0 0 chr6 74643050 74643073 -114636481 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 1363 168 18 31 chr6 74643073 74643359 -114636195 - AluSq SINE Alu -31 282 1 198 0 0 0 chr6 74643360 74643382 -114636172 + (T)n Simple_repeat Simple_repeat 1 22 0 415 326 219 16 chr6 74643388 74643753 -114635801 + L2 LINE L2 2875 3313 0 363 145 95 11 chr6 74644298 74644386 -114635168 - AluY SINE Alu 0 301 234 1187 101 0 0 chr6 74644386 74644545 -114635009 - AluY SINE Alu -103 208 50 2018 106 3 33 chr6 74644553 74644856 -114634698 + AluY SINE Alu 1 294 -17 490 297 267 24 chr6 74646644 74647135 -114632419 + L3 LINE CR1 941 1550 -27 355 68 34 0 chr6 74647596 74647655 -114631899 + (TC)n Simple_repeat Simple_repeat 1 61 0 1299 184 47 4 chr6 74647655 74647888 -114631666 - AluJo SINE Alu -25 287 45 202 250 31 0 chr6 74648629 74648693 -114630861 + CT-rich Low_complexity Low_complexity 2 67 0 337 211 165 18 chr6 74649188 74649297 -114630257 + MIR3 SINE MIR 83 207 -1 559 255 150 32 chr6 74651370 74651592 -114627962 + MLT1G LTR MaLR 357 590 0 215 274 21 74 chr6 74651645 74651740 -114627814 + L2 LINE L2 2477 2566 -748 673 357 93 26 chr6 74651777 74652388 -114627166 + L2 LINE L2 2658 3311 -2 2323 113 11 8 chr6 74652538 74652892 -114626662 - THE1A LTR MaLR 0 355 1 10287 92 37 53 chr6 74652892 74654498 -114625056 - THE1A-int LTR MaLR 0 1580 1 2325 114 20 8 chr6 74654498 74654849 -114624705 - THE1A LTR MaLR 0 355 1 238 270 191 8 chr6 74654859 74654985 -114624569 + MIR SINE MIR 108 256 -6 21 36 0 0 chr6 74656202 74656230 -114623324 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr6 74656263 74656290 -114623264 + AT_rich Low_complexity Low_complexity 1 27 0 234 368 9 45 chr6 74657040 74657263 -114622291 + L2 LINE L2 2143 2357 -957 221 342 111 30 chr6 74657610 74657908 -114621646 + L2 LINE L2 2376 2697 -617 276 351 69 15 chr6 74658087 74658218 -114621336 + L2 LINE L2 2950 3087 -185 188 250 83 83 chr6 74658516 74658624 -114620930 + L2 LINE L2 3195 3302 -11 240 35 0 0 chr6 74658624 74658653 -114620901 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 285 297 27 0 chr6 74659112 74659186 -114620368 + L2 LINE L2 3116 3191 -81 834 207 20 0 chr6 74659699 74659849 -114619705 - MER58B DNA MER1_type -6 335 183 650 288 24 34 chr6 74660809 74661014 -114618540 - MIR SINE MIR -32 230 28 298 248 98 75 chr6 74661684 74661817 -114617737 - MIR SINE MIR -27 235 100 21 57 0 0 chr6 74662537 74662572 -114616982 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr6 74663212 74663246 -114616308 + AT_rich Low_complexity Low_complexity 1 34 0 1282 251 88 7 chr6 74663525 74663959 -114615595 + Charlie1a DNA MER1_type 91 559 -896 1139 57 0 14 chr6 74663971 74664112 -114615442 + AluY SINE Alu 1 139 -172 679 131 18 0 chr6 74664119 74664340 -114615214 + L1PA4 LINE L1 6029 6250 0 1011 12 6 48 chr6 74664443 74664608 -114614946 + (GAA)n Simple_repeat Simple_repeat 2 159 0 1279 94 0 0 chr6 74664608 74664778 -114614776 + AluY SINE Alu 131 300 -11 2769 206 48 21 chr6 74664778 74665503 -114614051 + Charlie1a DNA MER1_type 569 1313 -142 2532 224 61 22 chr6 74665503 74665572 -114613982 + L1M4c LINE L1 29 94 -6290 501 17 0 0 chr6 74665572 74665630 -114613924 + (TA)n Simple_repeat Simple_repeat 2 59 0 2305 112 0 0 chr6 74665630 74665935 -114613619 - AluSg SINE Alu -5 305 1 2532 224 61 22 chr6 74665935 74666458 -114613096 + L1M4c LINE L1 93 645 -5739 * 3826 194 71 41 chr6 74666445 74666726 -114612828 + L1M4c LINE L1 1372 1643 -4739 2229 128 0 0 chr6 74666726 74667030 -114612524 + AluSx SINE Alu 1 304 -8 3826 194 71 41 chr6 74667030 74668020 -114611534 + L1M4c LINE L1 1643 2676 -3706 2054 173 113 19 chr6 74668030 74668492 -114611062 + LTR22 LTR ERVK 1 505 -4 4989 115 37 12 chr6 74668497 74669246 -114610308 + HERVK22 LTR ERVK 1 768 -6069 18601 170 22 22 chr6 74669479 74672501 -114607053 + HERVK22 LTR ERVK 2327 6837 0 1653 199 109 50 chr6 74672504 74672591 -114606963 + LTR22 LTR ERVK 4 84 -425 2678 20 3 0 chr6 74672591 74672892 -114606662 + AluY SINE Alu 1 302 -9 1653 199 109 50 chr6 74672892 74673282 -114606272 + LTR22 LTR ERVK 84 509 0 1293 228 75 71 chr6 74673295 74674141 -114605413 + L1M4c LINE L1 2695 3526 -2856 290 258 32 0 chr6 74674141 74674234 -114605320 - L1M4 LINE L1 -1747 4399 4304 2834 209 83 33 chr6 74674252 74675212 -114604342 + L1MA9 LINE L1 4446 5457 -743 198 0 0 0 chr6 74676115 74676137 -114603417 + (GA)n Simple_repeat Simple_repeat 1 22 0 406 58 0 0 chr6 74676290 74676342 -114603212 - L1MA9 LINE L1 -591 5743 5692 1631 200 22 90 chr6 74676349 74676894 -114602660 + L1MA9 LINE L1 5767 6274 -38 21 71 0 0 chr6 74677981 74678023 -114601531 + AT_rich Low_complexity Low_complexity 1 42 0 5228 111 18 36 chr6 74678613 74678715 -114600839 + L1PA13 LINE L1 5302 5404 -759 2173 110 10 0 chr6 74678715 74679007 -114600547 + AluSc SINE Alu 1 295 -14 5228 111 18 36 chr6 74679007 74679782 -114599772 + L1PA13 LINE L1 5404 6163 0 43 35 0 0 chr6 74680053 74680110 -114599444 + AT_rich Low_complexity Low_complexity 1 57 0 19214 127 43 94 chr6 74680613 74684668 -114594886 + L1P LINE L1 12 3859 -2287 11867 97 17 0 chr6 74684668 74687214 -114592340 + L1PA7 LINE L1 3560 6151 -3 243 273 7 32 chr6 74687716 74687804 -114591750 + T-rich Low_complexity Low_complexity 2 86 -65 1520 167 0 4 chr6 74687804 74688074 -114591480 - L1MA3 LINE L1 -8 6297 6029 243 273 7 32 chr6 74688074 74688139 -114591415 + T-rich Low_complexity Low_complexity 86 151 0 273 98 0 0 chr6 74688662 74688703 -114590851 + (TG)n Simple_repeat Simple_repeat 2 42 0 360 111 0 0 chr6 74688720 74688774 -114590780 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 508 305 18 49 chr6 74688918 74689203 -114590351 - L1MEc LINE L1 -4607 2114 1839 266 265 73 58 chr6 74689217 74689477 -114590077 - L1MEc LINE L1 -4889 1651 1388 403 264 60 99 chr6 74689478 74689842 -114589712 - L1MEc LINE L1 -5296 1425 1076 256 299 39 49 chr6 74689959 74690163 -114589391 - HAL1 LINE L1 -33 2474 2273 311 369 0 0 chr6 74690269 74690372 -114589182 - HAL1 LINE L1 -687 1820 1718 404 332 37 75 chr6 74691142 74691329 -114588225 + MER91A DNA MER1_type 1 180 -16 1883 218 77 8 chr6 74692059 74692555 -114586999 - L1MB8 LINE L1 0 6178 5649 465 390 4 22 chr6 74692865 74693139 -114586415 + LTR16A LTR ERVL 26 294 -156 4207 227 29 3 chr6 74693139 74694145 -114585409 + L1 LINE L1 3616 4647 -1499 323 270 8 32 chr6 74694129 74694255 -114585299 + L1PB1 LINE L1 94 216 -6647 * 4999 150 46 3 chr6 74694232 74695138 -114584416 + L1PB1 LINE L1 1392 2336 -4527 624 239 77 63 chr6 74695221 74695622 -114583932 + LTR30 LTR ERV1 108 469 -24 1147 233 40 48 chr6 74695645 74696023 -114583531 + HERV15 LTR ERV1 1 375 -8360 22238 283 31 32 chr6 74696091 74704183 -114575371 + HERV15 LTR ERV1 654 8734 -1 696 199 107 71 chr6 74704271 74704703 -114574851 + LTR30 LTR ERV1 224 596 0 14766 198 11 5 chr6 74704703 74708732 -114570822 + L1PB1 LINE L1 2333 6430 -437 2089 146 14 0 chr6 74708734 74709084 -114570470 + L1PB1 LINE L1 6510 6864 -3 4486 137 75 14 chr6 74709240 74710710 -114568844 + L1PA16 LINE L1 4629 6157 -9 547 230 33 33 chr6 74710723 74710875 -114568679 + LTR16A LTR ERVL 299 450 0 29803 35 5 1 chr6 74711321 74715743 -114563811 + L1PA4 LINE L1 1713 6152 -3 303 270 124 22 chr6 74715972 74716109 -114563445 + L1MC4 LINE L1 6703 6853 -1189 922 230 49 67 chr6 74716123 74716614 -114562940 + L1MC5 LINE L1 7425 7906 -55 27 0 0 0 chr6 74717057 74717084 -114562470 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr6 74718972 74719000 -114560554 + AT_rich Low_complexity Low_complexity 1 28 0 2097 135 13 39 chr6 74719783 74720168 -114559386 + THE1C LTR MaLR 1 375 0 275 85 21 0 chr6 74720446 74720493 -114559061 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 348 267 10 0 chr6 74721023 74721124 -114558430 + MER113 DNA MER1_type? 7 108 -413 22 0 0 0 chr6 74721227 74721249 -114558305 + AT_rich Low_complexity Low_complexity 1 22 0 386 316 46 46 chr6 74721249 74721445 -114558109 + MIR SINE MIR 66 261 -1 240 289 92 0 chr6 74721583 74721659 -114557895 + L2 LINE L2 3180 3262 -10 281 302 71 71 chr6 74721979 74722148 -114557406 - L2 LINE L2 -4 3268 3100 26 30 0 0 chr6 74722380 74722413 -114557141 + AT_rich Low_complexity Low_complexity 1 33 0 281 223 85 0 chr6 74723979 74724073 -114555481 + MER113 DNA MER1_type? 7 108 -413 642 230 183 0 chr6 74724267 74724458 -114555096 + MIR SINE MIR 9 234 -28 281 306 51 0 chr6 74724731 74724829 -114554725 - L2 LINE L2 -14 3258 3156 222 234 31 0 chr6 74724972 74725036 -114554518 - MIR SINE MIR -34 228 163 40 21 0 0 chr6 74725106 74725153 -114554401 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr6 74725219 74725240 -114554314 + AT_rich Low_complexity Low_complexity 1 21 0 399 84 14 0 chr6 74725240 74725311 -114554243 - L1MA2 LINE L1 0 6304 6233 256 253 0 0 chr6 74725312 74725380 -114554174 + L1 LINE L1 4873 4940 -1206 800 236 37 9 chr6 74726684 74726900 -114552654 - MER58A DNA MER1_type -2 222 1 369 379 72 36 chr6 74728395 74728563 -114550991 - L3 LINE CR1 -72 1505 1320 1353 231 47 14 chr6 74728563 74728922 -114550632 - MLT1A2 LTR MaLR 0 374 4 369 379 72 36 chr6 74728922 74729059 -114550495 - L3 LINE CR1 -257 1320 1189 218 294 0 47 chr6 74730223 74730308 -114549246 - L2 LINE L2 -4 3309 3229 321 141 35 24 chr6 74731957 74732042 -114547512 + CT-rich Low_complexity Low_complexity 3 88 0 500 175 10 31 chr6 74732042 74732139 -114547415 - AluJb SINE Alu -63 249 155 339 313 55 40 chr6 74732491 74732692 -114546862 + MIR SINE MIR 59 262 0 287 329 94 7 chr6 74733267 74733416 -114546138 + MIR3 SINE MIR 46 207 -1 1236 135 5 0 chr6 74733748 74733941 -114545613 + L1PB4 LINE L1 5961 6154 -2 1204 212 108 3 chr6 74734633 74734940 -114544614 - MER44D DNA MER2_type 0 609 1 291 279 76 14 chr6 74736803 74736970 -114542584 + MLT1G1 LTR MaLR 41 179 -376 5033 126 25 22 chr6 74736970 74738657 -114540897 - L1PA15 LINE L1 -5 7598 5873 305 231 0 0 chr6 74738712 74738777 -114540777 + L1P LINE L1 4199 4263 -1883 * 12624 227 21 29 chr6 74738775 74742285 -114537269 - L1PA15 LINE L1 -1710 5874 2393 341 284 199 32 chr6 74743360 74743642 -114535912 + L1M2 LINE L1 696 1024 -5825 330 372 89 60 chr6 74743425 74743962 -114535592 - L1M2 LINE L1 -5847 1002 450 * 478 305 19 48 chr6 74744056 74744427 -114535127 - L1PA15 LINE L1 -7214 367 8 189 154 0 0 chr6 74744515 74744554 -114535000 + GA-rich Low_complexity Low_complexity 1 39 0 400 306 8 15 chr6 74744640 74744774 -114534780 + MLT1G1 LTR MaLR 455 587 -8 24 0 0 0 chr6 74746473 74746497 -114533057 + AT_rich Low_complexity Low_complexity 1 24 0 345 299 111 26 chr6 74746677 74746773 -114532781 + L2 LINE L2 3187 3296 -17 369 62 0 0 chr6 74746773 74746821 -114532733 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 345 299 111 26 chr6 74746821 74746841 -114532713 + L2 LINE L2 3296 3313 0 706 341 18 0 chr6 74747108 74747347 -114532207 + MIR SINE MIR 20 262 0 750 285 31 0 chr6 74747509 74747702 -114531852 + MIR SINE MIR 29 227 -35 183 42 0 0 chr6 74747702 74747726 -114531828 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 36 23 0 0 chr6 74748046 74748089 -114531465 + AT_rich Low_complexity Low_complexity 1 43 0 250 335 68 26 chr6 74748292 74748487 -114531067 - MIR SINE MIR -49 213 5 371 323 47 42 chr6 74749529 74749721 -114529833 - MIR3 SINE MIR -4 204 12 22 0 0 0 chr6 74749742 74749764 -114529790 + AT_rich Low_complexity Low_complexity 1 22 0 2111 107 3 7 chr6 74750429 74750729 -114528825 + AluSg SINE Alu 1 299 -11 319 326 125 12 chr6 74751113 74751456 -114528098 - L1ME3A LINE L1 -221 5949 5568 660 309 171 16 chr6 74751732 74752218 -114527336 + L2 LINE L2 1928 2488 -826 1712 164 0 44 chr6 74752701 74753018 -114526536 + AluJb SINE Alu 3 305 -7 2266 137 19 6 chr6 74755935 74756294 -114523260 - THE1B LTR MaLR 0 364 1 32 26 0 0 chr6 74757117 74757156 -114522398 + AT_rich Low_complexity Low_complexity 1 39 0 672 245 87 5 chr6 74757937 74758133 -114521421 + MER58A DNA MER1_type 1 212 -12 16523 50 59 4 chr6 74758216 74760389 -114519165 + L1P LINE L1 3 2295 -3851 2184 145 19 6 chr6 74762326 74762685 -114516869 - THE1B LTR MaLR 0 364 1 32 26 0 0 chr6 74763507 74763546 -114516008 + AT_rich Low_complexity Low_complexity 1 39 0 295 305 48 9 chr6 74763632 74763737 -114515817 - L2 LINE L2 -5 3308 3200 25 31 0 0 chr6 74764726 74764758 -114514796 + AT_rich Low_complexity Low_complexity 1 32 0 691 240 87 5 chr6 74765565 74765761 -114513793 + MER58A DNA MER1_type 1 212 -12 41966 39 22 2 chr6 74765844 74771876 -114507678 + L1PA2 LINE L1 3 6154 -1 265 308 68 0 chr6 74771990 74772107 -114507447 - L1ME3A LINE L1 -8 6162 6038 216 200 0 0 chr6 74772126 74772176 -114507378 + (CA)n Simple_repeat Simple_repeat 2 51 0 334 262 173 15 chr6 74772199 74772401 -114507153 - L1ME3A LINE L1 -291 5879 5646 897 294 104 16 chr6 74772418 74772976 -114506578 - L1ME3A LINE L1 -865 5281 4675 263 226 83 0 chr6 74773009 74773093 -114506461 - L1M4 LINE L1 -1302 4844 4754 441 286 158 43 chr6 74773169 74773918 -114505636 - L1M4 LINE L1 -2241 3905 3071 432 236 60 28 chr6 74774073 74774255 -114505299 - L1M4 LINE L1 -3106 3040 2853 279 234 140 9 chr6 74774623 74774730 -114504824 - L1M4 LINE L1 -3373 2773 2653 195 100 0 0 chr6 74774755 74774785 -114504769 + (CA)n Simple_repeat Simple_repeat 2 31 0 25 31 0 0 chr6 74775516 74775548 -114504006 + AT_rich Low_complexity Low_complexity 1 32 0 460 256 0 47 chr6 74775861 74775990 -114503564 + MLT2C1 LTR ERVL 271 393 -4 22 0 0 0 chr6 74777723 74777745 -114501809 + AT_rich Low_complexity Low_complexity 1 22 0 341 89 18 0 chr6 74777775 74777831 -114501723 - L1MA4A LINE L1 -3 6300 6244 26 30 0 0 chr6 74777874 74777907 -114501647 + AT_rich Low_complexity Low_complexity 1 33 0 2196 97 0 7 chr6 74779613 74779903 -114499651 - AluSg SINE Alu -18 292 5 303 49 0 0 chr6 74780623 74780664 -114498890 + (TG)n Simple_repeat Simple_repeat 1 41 0 211 318 0 16 chr6 74780699 74780762 -114498792 + MIR SINE MIR 21 82 -180 193 295 80 36 chr6 74780806 74780918 -114498636 - L2 LINE L2 -32 3281 3165 1220 212 0 20 chr6 74781467 74781712 -114497842 + AluJo SINE Alu 1 240 -72 229 165 77 77 chr6 74781712 74781803 -114497751 + L1MC4 LINE L1 6613 6703 -1339 238 179 54 0 chr6 74781806 74781862 -114497692 + L1MCa LINE L1 2006 2064 -4362 407 284 171 29 chr6 74783078 74783353 -114496201 + LTR33 LTR ERVL 208 521 0 318 26 0 0 chr6 74783432 74783471 -114496083 + (CAA)n Simple_repeat Simple_repeat 2 40 0 551 273 81 84 chr6 74783551 74783678 -114495876 + HAL1 LINE L1 1261 1387 -1120 1737 223 3 6 chr6 74783678 74784042 -114495512 + MLT1A1 LTR MaLR 1 363 -2 551 273 81 84 chr6 74784042 74784459 -114495095 + HAL1 LINE L1 1387 1803 -704 208 167 24 0 chr6 74786264 74786306 -114493248 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 205 347 73 32 chr6 74786629 74786753 -114492801 - MIR SINE MIR -133 129 1 461 338 106 8 chr6 74786893 74787130 -114492424 - MIR SINE MIR 0 262 3 1942 137 10 7 chr6 74787373 74787673 -114491881 - AluSx SINE Alu -11 301 1 25 31 0 0 chr6 74787684 74787716 -114491838 + AT_rich Low_complexity Low_complexity 1 32 0 732 103 0 0 chr6 74788845 74788942 -114490612 - THE1C LTR MaLR 0 375 279 * 951 126 15 0 chr6 74788940 74789075 -114490479 - THE1C LTR MaLR -238 137 1 9196 127 12 70 chr6 74789075 74790752 -114488802 - THE1C-int LTR MaLR 0 1580 1 2299 123 21 19 chr6 74790752 74791126 -114488428 - THE1C LTR MaLR 0 375 1 207 167 0 0 chr6 74791500 74791542 -114488012 + GA-rich Low_complexity Low_complexity 2 43 0 360 0 0 0 chr6 74791562 74791602 -114487952 + (TG)n Simple_repeat Simple_repeat 2 41 0 530 179 11 0 chr6 74791712 74791807 -114487747 + MER20 DNA MER1_type 110 205 -14 369 104 39 0 chr6 74791808 74791885 -114487669 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 236 376 40 48 chr6 74792753 74792878 -114486676 - L2 LINE L2 0 3313 3190 1449 121 0 0 chr6 74793382 74793581 -114485973 + AluSg/x SINE Alu 82 280 -32 22 35 0 0 chr6 74794123 74794152 -114485402 + AT_rich Low_complexity Low_complexity 1 29 0 638 351 96 65 chr6 74794460 74795149 -114484405 - L2 LINE L2 0 3313 2576 2202 114 3 0 chr6 74795149 74795456 -114484098 + AluSq SINE Alu 1 308 -5 638 351 96 65 chr6 74795456 74795797 -114483757 - L2 LINE L2 -737 2576 2247 266 302 170 6 chr6 74795806 74795965 -114483589 - L2 LINE L2 -1230 2084 1900 330 359 8 0 chr6 74795966 74796083 -114483471 - MER94 DNA DNA 0 134 17 393 332 107 39 chr6 74796092 74796475 -114483079 - L2 LINE L2 -1411 1903 1495 558 275 6 12 chr6 74799016 74799176 -114480378 + MLT1J2 LTR MaLR 41 199 -251 1043 235 31 27 chr6 74799532 74799792 -114479762 - MLT1B LTR MaLR -127 263 3 207 176 46 56 chr6 74800851 74800959 -114478595 + (TATAA)n Simple_repeat Simple_repeat 3 109 0 21 36 0 0 chr6 74801799 74801827 -114477727 + AT_rich Low_complexity Low_complexity 1 28 0 350 310 130 10 chr6 74802158 74802264 -114477290 + MIR SINE MIR 37 129 -133 1889 161 17 73 chr6 74802264 74802675 -114476879 + MLT1B LTR MaLR 1 388 -2 350 310 130 10 chr6 74802675 74802771 -114476783 + MIR SINE MIR 129 262 0 276 310 138 9 chr6 74802932 74803048 -114476506 + MIR SINE MIR 26 156 -106 210 231 0 0 chr6 74803732 74803771 -114475783 + polypyrimidine Low_complexity Low_complexity 2 40 0 22 35 0 0 chr6 74803928 74803957 -114475597 + AT_rich Low_complexity Low_complexity 1 29 0 260 230 90 10 chr6 74804091 74804191 -114475363 + L1ME4a LINE L1 6012 6119 -2 238 284 15 0 chr6 74804750 74804817 -114474737 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 289 336 98 0 chr6 74805783 74805905 -114473649 + MIR SINE MIR 18 151 -111 564 225 29 0 chr6 74806508 74806646 -114472908 - Charlie1 DNA MER1_type 0 2761 2620 265 268 0 0 chr6 74806640 74806711 -114472843 - Charlie1 DNA MER1_type -2534 227 157 * 355 270 101 6 chr6 74807209 74807387 -114472167 - LTR33A LTR ERVL 0 523 329 17298 52 18 0 chr6 74807445 74810431 -114469123 + L1PA7 LINE L1 3149 6150 -4 1999 106 21 3 chr6 74810719 74811002 -114468552 - AluSq SINE Alu -25 288 1 215 67 44 44 chr6 74811133 74811178 -114468376 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 233 111 0 0 chr6 74811753 74811789 -114467765 - MADE1 DNA Mariner 0 80 45 3340 162 7 5 chr6 74811789 74812346 -114467208 - L1PA15 LINE L1 -27 6138 5581 451 161 23 0 chr6 74812348 74812435 -114467119 + L1P LINE L1 5091 5179 -967 27 0 0 0 chr6 74812654 74812681 -114466873 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr6 74813763 74813792 -114465762 + AT_rich Low_complexity Low_complexity 1 29 0 201 129 0 0 chr6 74814247 74814278 -114465276 + (TG)n Simple_repeat Simple_repeat 2 32 0 7316 145 52 10 chr6 74814627 74815365 -114464189 + HSMAR2 DNA Mariner 4 710 -592 2134 125 51 20 chr6 74815365 74815718 -114463836 + THE1B LTR MaLR 1 364 0 11506 104 1 1 chr6 74815718 74817299 -114462255 + THE1B-int LTR MaLR 1 1580 0 1757 147 31 100 chr6 74817299 74817688 -114461866 + THE1B LTR MaLR 1 362 -2 7316 145 52 10 chr6 74817688 74818193 -114461361 + HSMAR2 DNA Mariner 709 1301 -1 2267 161 49 5 chr6 74818452 74818857 -114460697 + MSTB LTR MaLR 4 426 0 410 298 21 62 chr6 74819265 74819507 -114460047 - MLT1L LTR MaLR -13 602 371 200 255 20 0 chr6 74821725 74821776 -114457778 + L2 LINE L2 2688 2739 -575 20968 61 1 0 chr6 74821781 74824438 -114455116 + L1P LINE L1 122 2779 -3367 1320 152 26 8 chr6 74824547 74824811 -114454743 + L1PA4 LINE L1 5887 6155 0 246 286 66 31 chr6 74824993 74825189 -114454365 - L1M4 LINE L1 -1310 6255 6053 427 158 0 13 chr6 74825275 74825351 -114454203 + Tigger2 DNA MER2_type 1 75 -2643 318 212 0 140 chr6 74825457 74825592 -114453962 - MER8 DNA MER2_type -126 113 2 23 33 0 0 chr6 74825762 74825792 -114453762 + AT_rich Low_complexity Low_complexity 1 30 0 671 167 0 33 chr6 74825882 74826002 -114453552 - FLAM_C SINE Alu -23 120 5 301 333 90 10 chr6 74826013 74826214 -114453340 - L1M4 LINE L1 -1909 5656 5440 181 29 59 29 chr6 74826216 74826250 -114453304 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 2413 86 3 9 chr6 74826250 74826589 -114452965 - L1PA8 LINE L1 -24 6148 5812 402 304 88 22 chr6 74826696 74826923 -114452631 - L1M4 LINE L1 -2280 5285 5044 216 297 13 82 chr6 74827214 74827336 -114452218 + MIR SINE MIR 37 152 -56 3302 238 79 19 chr6 74827775 74829467 -114450087 - L1M4 LINE L1 -3112 4453 2648 21 0 0 0 chr6 74829898 74829919 -114449635 + AT_rich Low_complexity Low_complexity 1 21 0 1863 187 56 27 chr6 74830182 74830714 -114448840 - MLT2A2 LTR ERVL 0 554 1 23 0 0 0 chr6 74830927 74830950 -114448604 + AT_rich Low_complexity Low_complexity 1 23 0 207 69 0 0 chr6 74832152 74832181 -114447373 + (ATTG)n Simple_repeat Simple_repeat 1 29 0 783 302 54 6 chr6 74833314 74833629 -114445925 - HAL1 LINE L1 -2174 333 4 2263 71 0 19 chr6 74833732 74834040 -114445514 - AluY SINE Alu -9 302 1 5401 187 25 52 chr6 74834484 74837660 -114441894 + L1MA8 LINE L1 3273 6268 -23 293 279 11 74 chr6 74837681 74837968 -114441586 + L1M4 LINE L1 5150 5418 -736 296 286 31 20 chr6 74838305 74838403 -114441151 + L1M2 LINE L1 945 1043 -5806 5168 264 77 22 chr6 74838412 74839282 -114440272 + L1 LINE L1 802 1623 -5226 4866 121 13 4 chr6 74839282 74840026 -114439528 - L1PA15 LINE L1 -8 6157 5407 5168 264 77 22 chr6 74840026 74840057 -114439497 + L1 LINE L1 1623 1651 -5198 7633 56 34 2 chr6 74840057 74840742 -114438812 + LTR13 LTR ERVK 1 728 -279 186 43 0 0 chr6 74840742 74840765 -114438789 + (TC)n Simple_repeat Simple_repeat 2 24 0 7633 56 34 2 chr6 74840765 74841055 -114438499 + LTR13 LTR ERVK 728 1007 0 5168 264 77 22 chr6 74841055 74841288 -114438266 + L1 LINE L1 1651 1870 -4979 1202 130 101 0 chr6 74841288 74841495 -114438059 + MER30 DNA MER1_type 3 230 0 5168 264 77 22 chr6 74841495 74841964 -114437590 + L1 LINE L1 1870 2495 -4354 3085 189 22 5 chr6 74841963 74842605 -114436949 + L1 LINE L1 4780 5432 -1416 * 1281 157 55 0 chr6 74842603 74842839 -114436715 + L1MA4 LINE L1 6002 6250 -50 * 332 268 40 128 chr6 74844591 74845013 -114434541 + MER110 LTR ERV1 75 459 -32 248 267 233 9 chr6 74845512 74845628 -114433926 + MIR SINE MIR 1 142 -120 226 284 10 69 chr6 74846003 74846051 -114433503 + MIR SINE MIR 151 191 -71 2812 7 0 0 chr6 74846051 74846360 -114433194 + AluYa5 SINE Alu 1 309 -2 226 284 10 69 chr6 74846360 74846413 -114433141 + MIR SINE MIR 191 246 -16 187 271 42 83 chr6 74846467 74846563 -114432991 + MIR SINE MIR 97 188 -74 1466 197 14 28 chr6 74846580 74846870 -114432684 - AluJo SINE Alu -24 288 3 256 314 119 8 chr6 74849052 74849170 -114430384 + L2 LINE L2 3182 3312 -1 39 60 0 0 chr6 74849170 74849237 -114430317 + AT_rich Low_complexity Low_complexity 1 67 0 427 304 50 0 chr6 74849377 74849538 -114430016 - MIR SINE MIR 0 262 94 33 85 0 0 chr6 74849548 74849630 -114429924 + AT_rich Low_complexity Low_complexity 1 82 0 407 167 13 0 chr6 74850545 74850623 -114428931 - MLT1I LTR MaLR -8 401 323 252 211 10 19 chr6 74851976 74852080 -114427474 + (TA)n Simple_repeat Simple_repeat 2 104 0 280 308 83 19 chr6 74852391 74852547 -114427007 - MIR3 SINE MIR -11 197 32 254 218 18 0 chr6 74853006 74853061 -114426493 - MLT1L LTR MaLR -409 206 151 467 278 106 0 chr6 74853231 74853411 -114426143 + MIR SINE MIR 53 251 -11 777 204 19 31 chr6 74853866 74854028 -114425526 - MER58B DNA MER1_type -15 326 167 21 0 0 0 chr6 74858553 74858574 -114420980 + AT_rich Low_complexity Low_complexity 1 21 0 396 254 174 0 chr6 74859599 74859737 -114419817 + MIR SINE MIR 101 262 0 95 44 0 0 chr6 74860270 74860407 -114419147 + AT_rich Low_complexity Low_complexity 1 137 0 531 257 55 60 chr6 74862308 74862526 -114417028 - MIR SINE MIR -2 260 44 226 224 0 0 chr6 74862679 74862728 -114416826 - MIR SINE MIR -31 231 183 180 0 0 0 chr6 74863250 74863270 -114416284 + (TTG)n Simple_repeat Simple_repeat 2 21 0 234 317 0 0 chr6 74863635 74863695 -114415859 - L2 LINE L2 -20 3252 3193 588 75 0 0 chr6 74864426 74864506 -114415048 - L1PA5 LINE L1 0 6154 6075 297 311 98 36 chr6 74864929 74865122 -114414432 + L2 LINE L2 2583 2787 -527 23 0 0 0 chr6 74866907 74866930 -114412624 + AT_rich Low_complexity Low_complexity 1 23 0 214 325 68 68 chr6 74868142 74868348 -114411206 - L2 LINE L2 -250 3022 2817 533 265 87 25 chr6 74868955 74869151 -114410403 - MIR SINE MIR -42 220 13 5475 69 17 0 chr6 74869240 74869961 -114409593 - L1PA8 LINE L1 -7 6165 5433 27 0 0 0 chr6 74870339 74870366 -114409188 + AT_rich Low_complexity Low_complexity 1 27 0 234 174 0 0 chr6 74872211 74872257 -114407297 + (TA)n Simple_repeat Simple_repeat 2 47 0 727 256 37 11 chr6 74872666 74872857 -114406697 + MIR SINE MIR 28 223 -39 278 26 26 0 chr6 74873000 74873039 -114406515 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1972 46 73 4 chr6 74873040 74873299 -114406255 - AluY SINE Alu -34 277 1 23 33 0 0 chr6 74873549 74873579 -114405975 + AT_rich Low_complexity Low_complexity 1 30 0 1698 163 129 13 chr6 74874526 74874906 -114404648 + MSTA LTR MaLR 1 424 -4 225 304 0 25 chr6 74875240 74875319 -114404235 - L2 LINE L2 -1 3312 3236 252 350 0 26 chr6 74875754 74875871 -114403683 + L2 LINE L2 3197 3310 -3 195 355 36 36 chr6 74876746 74876856 -114402698 + MIR SINE MIR 28 137 -71 22 0 0 0 chr6 74877285 74877307 -114402247 + AT_rich Low_complexity Low_complexity 1 22 0 2123 98 10 0 chr6 74877408 74877703 -114401851 + AluY SINE Alu 1 298 -13 236 29 0 0 chr6 74877749 74877784 -114401770 - Alu SINE Alu -4 298 264 341 65 0 0 chr6 74877965 74878011 -114401543 - L1PA5 LINE L1 -2 6152 6107 588 55 0 0 chr6 74878011 74878084 -114401470 + L1PA4 LINE L1 5827 5899 -256 209 329 61 0 chr6 74879196 74879278 -114400276 + MIR3 SINE MIR 113 199 -9 369 0 0 0 chr6 74879329 74879370 -114400184 + (TTA)n Simple_repeat Simple_repeat 2 42 0 553 176 0 0 chr6 74879415 74879506 -114400048 - Charlie1 DNA MER1_type -1 2760 2670 26 50 0 0 chr6 74879875 74879915 -114399639 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr6 74879982 74880004 -114399550 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr6 74881415 74881451 -114398103 + AT_rich Low_complexity Low_complexity 1 36 0 355 81 0 58 chr6 74882000 74882087 -114397467 + (TA)n Simple_repeat Simple_repeat 1 82 0 294 194 0 0 chr6 74882865 74882927 -114396627 + (CATA)n Simple_repeat Simple_repeat 3 64 0 22 0 0 0 chr6 74883926 74883948 -114395606 + AT_rich Low_complexity Low_complexity 1 22 0 25 83 0 0 chr6 74886146 74886206 -114393348 + AT_rich Low_complexity Low_complexity 1 60 0 26 50 0 0 chr6 74886504 74886544 -114393010 + AT_rich Low_complexity Low_complexity 1 40 0 830 147 1 23 chr6 74886877 74887044 -114392510 + L1PA13 LINE L1 5933 6093 -70 1289 112 0 5 chr6 74887044 74887241 -114392313 + L1PA13 LINE L1 5964 6159 -4 21 0 0 0 chr6 74887247 74887268 -114392286 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 74887560 74887588 -114391966 + AT_rich Low_complexity Low_complexity 1 28 0 2274 126 24 21 chr6 74889387 74889761 -114389793 + THE1C LTR MaLR 1 375 0 229 184 0 0 chr6 74891618 74891656 -114387898 - LTR33A LTR ERVL 0 523 486 1007 219 76 95 chr6 74891691 74892060 -114387494 - MER57A LTR ERV1 0 403 42 352 282 19 0 chr6 74892321 74892424 -114387130 - MLT2E LTR ERVL -480 148 44 359 165 0 46 chr6 74894941 74895050 -114384504 + CT-rich Low_complexity Low_complexity 2 105 0 486 320 147 0 chr6 74895125 74895350 -114384204 - L2 LINE L2 -5 3308 3051 7422 32 8 0 chr6 74895431 74896906 -114382648 - L1PA5 LINE L1 -11 6143 4664 29907 93 9 12 chr6 74897952 74903247 -114376307 - L1PA7 LINE L1 0 6154 879 29833 34 4 1 chr6 74903892 74908237 -114371317 - L1PA2 LINE L1 -83 6072 1713 382 255 35 50 chr6 74908683 74908824 -114370730 - LTR16A LTR ERVL 0 450 312 2507 187 22 0 chr6 74909284 74909793 -114369761 - L1PA14 LINE L1 -850 5296 4777 5523 124 7 1 chr6 74909793 74910638 -114368916 + L1PA14 LINE L1 5312 6161 0 3581 176 60 8 chr6 74910642 74911376 -114368178 + L1MD1 LINE L1 5470 6241 -1 29 70 0 0 chr6 74911377 74911434 -114368120 + AT_rich Low_complexity Low_complexity 1 57 0 197 263 40 26 chr6 74912291 74912367 -114367187 + L3 LINE CR1 627 703 -874 23 0 0 0 chr6 74912688 74912711 -114366843 + AT_rich Low_complexity Low_complexity 1 23 0 276 289 36 0 chr6 74914560 74914643 -114364911 + MIR SINE MIR 140 225 -37 2117 80 59 0 chr6 74916329 74916497 -114363057 - AluY SINE Alu -6 305 112 485 16 16 0 chr6 74916497 74916559 -114362995 + (TTTTA)n Simple_repeat Simple_repeat 2 64 0 2117 80 59 0 chr6 74916559 74916678 -114362876 - AluY SINE Alu -199 112 1 26 50 0 0 chr6 74916678 74916718 -114362836 + AT_rich Low_complexity Low_complexity 1 40 0 2422 58 0 0 chr6 74917375 74917669 -114361885 + AluY SINE Alu 1 294 -17 180 0 0 0 chr6 74917669 74917689 -114361865 + (TTAAA)n Simple_repeat Simple_repeat 2 21 0 866 311 58 68 chr6 74917701 74918893 -114360661 + L1MCc LINE L1 1263 2657 -4465 537 241 59 18 chr6 74918910 74919130 -114360424 + L1ME2 LINE L1 5935 6163 -1 215 308 34 0 chr6 74919466 74919583 -114359971 + T-rich Low_complexity Low_complexity 3 123 0 215 229 21 0 chr6 74919857 74919905 -114359649 + (CA)n Simple_repeat Simple_repeat 1 49 0 1870 150 7 13 chr6 74920403 74920710 -114358844 + AluJb SINE Alu 1 305 -7 40 73 0 0 chr6 74921738 74921820 -114357734 + AT_rich Low_complexity Low_complexity 1 82 0 3747 12 0 0 chr6 74921957 74922385 -114357169 - L1PA2 LINE L1 -3 6152 5725 410 316 63 29 chr6 74923595 74923842 -114355712 - MIR SINE MIR 0 262 10 564 91 11 23 chr6 74923965 74924062 -114355492 - L1MB2 LINE L1 -243 5928 5840 950 119 20 0 chr6 74924062 74924211 -114355343 + L1MB2 LINE L1 6008 6161 -10 1350 209 16 32 chr6 74924235 74924546 -114355008 + AluJo SINE Alu 5 310 -2 2226 114 0 3 chr6 74925423 74925731 -114353823 - AluSx SINE Alu -5 307 1 258 263 96 58 chr6 74926633 74926789 -114352765 + MIR SINE MIR 51 212 -50 28 0 0 0 chr6 74927160 74927188 -114352366 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr6 74928358 74928393 -114351161 + AT_rich Low_complexity Low_complexity 1 35 0 214 238 63 0 chr6 74928707 74928770 -114350784 + MIR SINE MIR 120 186 -76 211 333 52 21 chr6 74928766 74928862 -114350692 - MIR SINE MIR -112 150 52 * 355 270 101 6 chr6 74929238 74929416 -114350138 - LTR33A LTR ERVL 0 523 329 17955 40 1 2 chr6 74929474 74931872 -114347682 + L1P2 LINE L1 3149 5543 -612 1619 86 0 5 chr6 74931873 74932095 -114347459 - pTR5 LTR ERV1 -2046 392 172 426 250 16 0 chr6 74932098 74932222 -114347332 - LTR30 LTR ERV1 -80 642 517 3798 124 179 35 chr6 74932222 74933158 -114346396 - pTR5 LTR ERV1 -439 1999 759 5036 51 2 0 chr6 74933158 74933789 -114345765 + L1PA4 LINE L1 5524 6155 0 6049 39 0 0 chr6 74934683 74935422 -114344132 - L1PA4 LINE L1 0 6155 5417 3887 24 4 0 chr6 74935422 74935879 -114343675 + L1P LINE L1 4002 4460 -1686 250 264 11 0 chr6 74936042 74936133 -114343421 + L1MC4 LINE L1 6612 6703 -1339 273 119 0 0 chr6 74936133 74936175 -114343379 + (TA)n Simple_repeat Simple_repeat 2 43 0 415 101 0 14 chr6 74936412 74936481 -114343073 + MER4B LTR ERV1 1 68 -542 1364 147 0 0 chr6 74936481 74936685 -114342869 - AluSx SINE Alu -9 303 100 1413 62 0 4 chr6 74936711 74936909 -114342645 - L1ME LINE L1 -567 5595 5403 625 170 0 0 chr6 74936917 74937017 -114342537 - AluSx SINE Alu -212 100 1 4057 131 63 91 chr6 74937018 74937580 -114341974 + MER4D LTR ERV1 56 587 -316 1824 128 3 21 chr6 74937580 74937862 -114341692 + AluSg SINE Alu 1 277 -33 4057 131 63 91 chr6 74937862 74938171 -114341383 + MER4D LTR ERV1 587 903 0 4584 170 60 16 chr6 74939508 74940564 -114338990 + L1MA8 LINE L1 5172 6271 -20 28 0 0 0 chr6 74940564 74940592 -114338962 + AT_rich Low_complexity Low_complexity 1 28 0 249 208 4 8 chr6 74940595 74940673 -114338881 + L1ME1 LINE L1 5352 5428 -814 249 115 96 19 chr6 74940660 74940703 -114338851 - L1MA4 LINE L1 -79 6221 6172 308 185 0 0 chr6 74940703 74940768 -114338786 + L1MA4 LINE L1 6219 6283 -17 2367 261 37 13 chr6 74940889 74941585 -114337969 + L1ME1 LINE L1 5449 6161 -5 474 49 0 0 chr6 74942138 74942199 -114337355 + (CA)n Simple_repeat Simple_repeat 2 62 0 965 250 0 19 chr6 74942684 74942892 -114336662 + MER58A DNA MER1_type 2 205 -19 24 0 0 0 chr6 74943152 74943176 -114336378 + AT_rich Low_complexity Low_complexity 1 24 0 741 200 22 43 chr6 74943248 74943433 -114336121 + MER20 DNA MER1_type 34 214 -5 183 130 56 19 chr6 74943453 74943507 -114336047 + A-rich Low_complexity Low_complexity 2 57 0 619 202 0 16 chr6 74944178 74944198 -114335356 - FRAM SINE Alu -141 171 152 423 56 0 0 chr6 74944198 74944252 -114335302 + (TG)n Simple_repeat Simple_repeat 1 54 0 619 202 0 16 chr6 74944252 74944360 -114335194 - FRAM SINE Alu -160 152 45 1537 132 4 4 chr6 74944710 74944952 -114334602 - L1PA13 LINE L1 -11 6152 5911 24 53 0 0 chr6 74945647 74945685 -114333869 + AT_rich Low_complexity Low_complexity 1 38 0 4999 178 26 8 chr6 74945806 74946760 -114332794 + L1P LINE L1 3658 4628 -1518 1127 162 75 24 chr6 74946757 74947010 -114332544 + L1 LINE L1 4543 4808 -1338 * 315 331 55 28 chr6 74948560 74948705 -114330849 - L2 LINE L2 0 3313 3165 44 35 0 0 chr6 74948839 74948897 -114330657 + AT_rich Low_complexity Low_complexity 1 58 0 1589 127 29 0 chr6 74948969 74949214 -114330340 - L1M2 LINE L1 -559 5732 5481 2319 80 0 19 chr6 74949215 74949528 -114330026 - AluSc SINE Alu -2 307 1 434 111 42 0 chr6 74949528 74949600 -114329954 - L1PA7 LINE L1 -4 6150 6076 1503 39 0 39 chr6 74949600 74949804 -114329750 + L1PA7 LINE L1 5858 6053 -101 * 1575 160 86 49 chr6 74949802 74950338 -114329216 - L1M2 LINE L1 -745 5401 4951 2490 176 37 13 chr6 74950338 74950877 -114328677 + L1MA9 LINE L1 5759 6310 -2 1932 146 0 3 chr6 74951734 74952022 -114327532 - AluSx SINE Alu -25 287 1 875 319 27 3 chr6 74952863 74953158 -114326396 + L1MEc LINE L1 189 490 -5906 28545 117 18 22 chr6 74953381 74954407 -114325147 + L1PA7 LINE L1 705 1733 -4736 2287 83 0 0 chr6 74954407 74954707 -114324847 + AluY SINE Alu 1 300 -11 28545 117 18 22 chr6 74954707 74959369 -114320185 + L1PA7 LINE L1 1733 6453 -16 406 320 77 0 chr6 74960828 74960984 -114318570 - MIR SINE MIR -39 223 56 24 77 0 0 chr6 74961616 74961668 -114317886 + AT_rich Low_complexity Low_complexity 1 52 0 1582 208 96 16 chr6 74961778 74962205 -114317349 + MLT1C LTR MaLR 5 465 -2 213 65 0 0 chr6 74962435 74962466 -114317088 + (CA)n Simple_repeat Simple_repeat 2 32 0 1169 300 72 42 chr6 74962901 74963545 -114316009 + L2 LINE L2 2493 3162 -151 302 0 26 0 chr6 74963545 74963583 -114315971 + (TG)n Simple_repeat Simple_repeat 2 40 0 1169 300 72 42 chr6 74963583 74963735 -114315819 + L2 LINE L2 3162 3308 -5 23 0 0 0 chr6 74964958 74964981 -114314573 + AT_rich Low_complexity Low_complexity 1 23 0 190 319 157 33 chr6 74965328 74965538 -114314016 - L2 LINE L2 -219 3053 2818 1236 208 84 17 chr6 74966276 74966623 -114312931 - MER45B DNA AcHobo -2 1038 669 248 266 78 0 chr6 74966639 74966703 -114312851 - MER45B DNA AcHobo -713 327 259 868 258 4 71 chr6 74966987 74967120 -114312434 - MER58A DNA MER1_type -2196 224 112 1700 129 132 20 chr6 74967120 74967423 -114312131 + MER1B DNA MER1_type 1 337 0 868 258 4 71 chr6 74967423 74967529 -114312025 - MER58A DNA MER1_type -2308 112 1 203 176 0 0 chr6 74968354 74968388 -114311166 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 191 184 0 82 chr6 74968400 74968449 -114311105 + L2 LINE L2 3264 3308 -5 2114 126 3 0 chr6 74968461 74968754 -114310800 + AluSp SINE Alu 1 294 -19 36 62 0 0 chr6 74969338 74969402 -114310152 + AT_rich Low_complexity Low_complexity 1 64 0 248 269 0 26 chr6 74969402 74969480 -114310074 - L1ME LINE L1 -517 5604 5529 2925 165 30 2 chr6 74969891 74970424 -114309130 + L1PA16 LINE L1 5610 6157 -9 854 249 121 41 chr6 74970977 74971315 -114308239 + MLT1A1 LTR MaLR 1 365 0 213 303 30 15 chr6 74972512 74972578 -114306976 - L2 LINE L2 -22 3291 3225 637 251 17 6 chr6 74972738 74972917 -114306637 + L1M4 LINE L1 4751 4931 -1215 384 336 103 26 chr6 74973272 74973718 -114305836 + LTR33 LTR ERVL 19 521 0 404 217 0 0 chr6 74979176 74979259 -114300295 + L1PB4 LINE L1 3503 3585 -2561 * 1163 15 0 0 chr6 74979250 74979382 -114300172 - L1PA4 LINE L1 -422 5733 5602 3428 31 2 0 chr6 74979383 74979798 -114299756 + L1PA4 LINE L1 5737 6152 -3 22 0 0 0 chr6 74979798 74979820 -114299734 + AT_rich Low_complexity Low_complexity 1 22 0 8953 179 16 14 chr6 74979820 74980798 -114298756 + L1PB4 LINE L1 3562 4536 -1767 1974 175 45 35 chr6 74980798 74981220 -114298334 - MSTA LTR MaLR 0 428 3 8953 179 16 14 chr6 74981220 74982981 -114296573 + L1PB4 LINE L1 4536 6302 -1 2304 53 0 3 chr6 74983124 74983431 -114296123 + AluY SINE Alu 1 306 0 966 339 107 26 chr6 74983607 74984568 -114294986 - L2 LINE L2 -5 3308 2275 367 284 0 0 chr6 74984657 74984745 -114294809 - MIR SINE MIR -172 90 3 276 224 158 36 chr6 74985078 74985243 -114294311 + LTR33A LTR ERVL 322 506 -17 246 321 46 69 chr6 74985606 74985737 -114293817 + L2 LINE L2 3136 3263 -9 1308 345 93 26 chr6 74985848 74987004 -114292550 + L2 LINE L2 1819 3051 -221 182 268 0 10 chr6 74988188 74988285 -114291269 + CT-rich Low_complexity Low_complexity 1 96 0 446 0 19 0 chr6 74988823 74988877 -114290677 + (TG)n Simple_repeat Simple_repeat 2 56 0 260 245 11 53 chr6 74989942 74990036 -114289518 + L2 LINE L2 2685 2774 -540 1510 193 66 20 chr6 74992294 74992642 -114286912 - MLT1A1 LTR MaLR -1 364 1 342 310 120 6 chr6 74992811 74992969 -114286585 + MIR SINE MIR 66 241 -21 226 271 149 9 chr6 74993178 74993285 -114286269 - L2 LINE L2 -10 3303 3182 3795 184 34 3 chr6 74993431 74994192 -114285362 + L1MC1 LINE L1 5534 6318 -15 260 320 77 51 chr6 74994240 74994503 -114285051 - L2 LINE L2 -226 3046 2783 1528 187 4 15 chr6 74994585 74994858 -114284696 + AluJo SINE Alu 12 281 -31 33 80 0 0 chr6 74994858 74994933 -114284621 + AT_rich Low_complexity Low_complexity 1 75 0 1904 138 21 0 chr6 74995377 74995667 -114283887 - AluSx SINE Alu -8 304 9 247 162 0 0 chr6 74996082 74996119 -114283435 + L1MCa LINE L1 553 589 -5837 21 0 0 0 chr6 74996958 74996979 -114282575 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 74998116 74998139 -114281415 + AT_rich Low_complexity Low_complexity 1 23 0 3573 244 37 36 chr6 74998390 74999494 -114280060 + L1MCb LINE L1 1 1105 -4940 2020 171 0 3 chr6 74999529 74999868 -114279686 - MER47A DNA MER2_type 0 366 29 214 321 0 0 chr6 75000794 75000847 -114278707 - L3 LINE CR1 -1119 458 406 21 57 0 0 chr6 75001767 75001802 -114277752 + AT_rich Low_complexity Low_complexity 1 35 0 406 320 36 36 chr6 75002565 75002759 -114276795 - MIR SINE MIR -2 260 67 1199 217 32 41 chr6 75004294 75004608 -114274946 - MER67D LTR ERV1 0 514 204 778 192 13 0 chr6 75004635 75004786 -114274768 - AluJb SINE Alu -1 311 159 1242 131 40 0 chr6 75004787 75004985 -114274569 - MER67D LTR ERV1 -308 206 1 286 242 81 0 chr6 75005012 75005111 -114274443 - LTR67 LTR ERVL -3 554 448 621 161 27 9 chr6 75005993 75006105 -114273449 - FRAM SINE Alu -20 156 43 405 335 73 52 chr6 75007068 75007259 -114272295 + MER91A DNA MER1_type 2 196 0 694 167 36 0 chr6 75008111 75008249 -114271305 - L1MB1 LINE L1 0 6168 6026 375 314 107 12 chr6 75008319 75008488 -114271066 + MIR SINE MIR 40 224 -38 473 236 69 21 chr6 75008663 75008807 -114270747 + L1ME1 LINE L1 5989 6139 -27 689 264 43 6 chr6 75009932 75010095 -114269459 - FAM SINE Alu -6 169 1 1843 198 5 19 chr6 75010384 75010752 -114268802 - MLT1A1 LTR MaLR -2 363 1 215 233 0 0 chr6 75010838 75010881 -114268673 - MIR SINE MIR 0 262 220 222 203 0 47 chr6 75011100 75011164 -114268390 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 1391 241 70 25 chr6 75011445 75011888 -114267666 + MLT1C LTR MaLR 5 467 0 221 358 80 15 chr6 75012191 75012328 -114267226 - L2 LINE L2 -19 3294 3149 2292 56 0 3 chr6 75012859 75013146 -114266408 + AluY SINE Alu 1 286 -25 243 0 0 0 chr6 75013149 75013176 -114266378 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 699 193 64 47 chr6 75013472 75013643 -114265911 - AluJo SINE Alu -12 300 127 2093 203 34 13 chr6 75013870 75014344 -114265210 - L1MC3 LINE L1 -1 7784 7301 491 248 10 0 chr6 75014347 75014448 -114265106 - L1MC3 LINE L1 -605 7180 7079 1863 233 39 76 chr6 75014480 75015146 -114264408 - L1M4 LINE L1 -1538 4608 3974 2244 103 0 10 chr6 75015146 75015458 -114264096 - AluSc SINE Alu 0 309 1 1863 233 39 76 chr6 75015458 75015585 -114263969 - L1M4 LINE L1 -2172 3974 3844 264 245 66 28 chr6 75015606 75015712 -114263842 - L1M4 LINE L1 -2241 3905 3796 31 68 0 0 chr6 75016991 75017050 -114262504 + AT_rich Low_complexity Low_complexity 1 59 0 189 0 0 0 chr6 75017581 75017602 -114261952 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 433 351 16 5 chr6 75018468 75018653 -114260901 - LTR16C LTR ERVL -4 487 301 1058 261 82 36 chr6 75018747 75019038 -114260516 + MLT1F LTR MaLR 166 478 -64 1981 118 0 4 chr6 75019038 75019343 -114260211 - AluSc SINE Alu 0 304 1 1058 261 82 36 chr6 75019343 75019406 -114260148 + MLT1F LTR MaLR 478 537 -5 9570 32 2 1 chr6 75019933 75021092 -114258462 - L1PA4 LINE L1 -1542 4604 3445 7446 32 0 3 chr6 75021092 75022665 -114256889 + L1PA4 LINE L1 4582 6152 -3 947 93 76 23 chr6 75022808 75022980 -114256574 + L1PA11 LINE L1 5994 6174 0 21 71 0 0 chr6 75023203 75023245 -114256309 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr6 75023461 75023491 -114256063 + AT_rich Low_complexity Low_complexity 1 30 0 1557 163 27 57 chr6 75024003 75024334 -114255220 - MLT1B LTR MaLR -2 388 68 7369 34 2 6 chr6 75024601 75025791 -114253763 + L1PA3 LINE L1 4963 6152 -3 1939 150 48 23 chr6 75026134 75026488 -114253066 - THE1B LTR MaLR -1 363 1 2001 171 3 9 chr6 75026719 75027058 -114252496 + MER1B DNA MER1_type 1 337 0 329 283 48 36 chr6 75027132 75027298 -114252256 + MLT1L LTR MaLR 440 607 -8 2156 94 3 24 chr6 75027895 75028193 -114251361 + AluSp SINE Alu 1 292 -21 442 120 40 0 chr6 75028322 75028397 -114251157 + MADE1 DNA Mariner 3 80 0 2256 133 8 19 chr6 75028639 75029007 -114250547 + THE1B LTR MaLR 1 364 0 321 332 77 32 chr6 75029176 75029396 -114250158 + MLT1K LTR MaLR 335 564 -24 199 290 14 72 chr6 75030623 75030761 -114248793 + MIR SINE MIR 76 205 -57 2360 65 3 10 chr6 75031583 75031890 -114247664 + AluY SINE Alu 1 305 -6 254 259 120 9 chr6 75032629 75032737 -114246817 + L1ME4a LINE L1 5998 6117 -4 373 339 94 51 chr6 75033222 75033573 -114245981 - MLT1G LTR MaLR -224 366 1 891 220 80 110 chr6 75033641 75034232 -114245322 + L1MC4 LINE L1 7465 8037 -5 1893 137 0 10 chr6 75034404 75034697 -114244857 - AluSg SINE Alu -20 290 1 706 315 112 52 chr6 75034821 75035989 -114243565 + L1M4 LINE L1 2541 3778 -2368 1007 135 6 6 chr6 75036596 75036759 -114242795 + AluSc SINE Alu 135 297 -12 1399 239 83 52 chr6 75037192 75037649 -114241905 + MLT1E3 LTR MaLR 153 623 -1 180 152 0 0 chr6 75037813 75037846 -114241708 + (TG)n Simple_repeat Simple_repeat 1 33 0 1357 209 113 21 chr6 75037889 75038315 -114241239 + MLT1C LTR MaLR 3 467 0 251 232 0 0 chr6 75038405 75038461 -114241093 + MER116 DNA Mariner 19 74 -6 1700 187 17 0 chr6 75038512 75038806 -114240748 - AluJb SINE Alu -13 299 1 29 0 0 0 chr6 75040352 75040381 -114239173 + AT_rich Low_complexity Low_complexity 1 29 0 221 319 78 54 chr6 75041004 75041170 -114238384 - L2 LINE L2 -7 3306 3137 750 292 59 67 chr6 75041388 75041744 -114237810 - LTR16C LTR ERVL -3 488 136 14452 54 2 1 chr6 75041901 75043741 -114235813 - L1PA4 LINE L1 -3601 2545 705 22658 41 6 0 chr6 75043741 75047332 -114232222 + L1PA4 LINE L1 2550 6149 -6 429 245 27 20 chr6 75047398 75047545 -114232009 + LTR37B LTR ERV1 199 346 -122 400 326 22 14 chr6 75047681 75047819 -114231735 - MIR SINE MIR -96 166 28 502 272 19 31 chr6 75048343 75048505 -114231049 - MLT1I LTR MaLR -3 406 247 4744 124 4 8 chr6 75048676 75049415 -114230139 - LTR17 LTR ERV1 0 780 1 1568 199 16 58 chr6 75049474 75049855 -114229699 + MLT1A1 LTR MaLR 1 365 0 1900 123 12 22 chr6 75050876 75051200 -114228354 + L1PA14 LINE L1 5840 6160 -1 272 353 113 31 chr6 75051208 75051757 -114227797 + L2 LINE L2 1793 2386 -928 54 0 0 0 chr6 75052103 75052157 -114227397 + AT_rich Low_complexity Low_complexity 1 54 0 26 0 0 0 chr6 75052195 75052221 -114227333 + AT_rich Low_complexity Low_complexity 1 26 0 659 266 34 17 chr6 75052856 75053033 -114226521 - MER5A DNA MER1_type -7 182 3 2277 77 0 55 chr6 75053481 75053807 -114225747 - AluY SINE Alu -3 308 1 224 279 0 0 chr6 75054300 75054361 -114225193 + GA-rich Low_complexity Low_complexity 2 62 0 1421 202 110 48 chr6 75054810 75055328 -114224226 + MER67C LTR ERV1 1 514 0 405 39 0 0 chr6 75055343 75055394 -114224160 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2020 156 17 6 chr6 75056116 75056475 -114223079 + MLT1A1 LTR MaLR 1 363 -2 456 172 0 0 chr6 75059670 75059757 -114219797 + (CA)n Simple_repeat Simple_repeat 2 88 0 199 324 178 29 chr6 75059888 75060338 -114219216 + L2 LINE L2 2229 2745 -569 2172 110 7 7 chr6 75060359 75060668 -114218886 - AluSx SINE Alu -3 309 1 304 277 54 9 chr6 75060744 75060856 -114218698 + MIR SINE MIR 74 190 -72 317 109 16 0 chr6 75061095 75061159 -114218395 + (TA)n Simple_repeat Simple_repeat 2 66 0 248 111 22 0 chr6 75061158 75061203 -114218351 + GA-rich Low_complexity Low_complexity 2 47 0 * 225 267 0 20 chr6 75061304 75061405 -114218149 - L1MC4 LINE L1 -11 8031 7933 1814 142 51 45 chr6 75061418 75061770 -114217784 - MLT1A1 LTR MaLR 0 365 12 309 326 104 26 chr6 75062307 75062577 -114216977 - L1MC4 LINE L1 -615 7427 7137 404 232 20 0 chr6 75062871 75062970 -114216584 - L1MC4 LINE L1 -1031 7011 6911 2137 117 0 0 chr6 75063103 75063402 -114216152 + AluSx SINE Alu 2 300 -12 1930 121 14 7 chr6 75063515 75063804 -114215750 + AluSx SINE Alu 7 297 -15 892 316 73 23 chr6 75064054 75064672 -114214882 - L1MC4 LINE L1 -1850 5958 5310 1807 281 60 34 chr6 75065045 75065926 -114213628 + L1M4b LINE L1 2 973 -5886 456 214 36 9 chr6 75065969 75066081 -114213473 + L1M4b LINE L1 947 1061 -5886 308 302 0 0 chr6 75066307 75066393 -114213161 + MER50 LTR ERV1 9 94 -640 508 112 0 22 chr6 75066418 75066507 -114213047 + AluY SINE Alu 1 87 -223 498 250 119 67 chr6 75066513 75066857 -114212697 - LTR15 LTR ERV1 -24 469 108 1665 74 0 18 chr6 75066959 75067205 -114212349 + AluY SINE Alu 71 312 0 1601 224 98 16 chr6 75067314 75067765 -114211789 + MER50 LTR ERV1 240 727 -7 646 287 115 41 chr6 75067849 75068533 -114211021 + L1M4b LINE L1 1321 1983 -4976 491 206 72 93 chr6 75068553 75068900 -114210654 + LTR46 LTR ERV1 1 460 0 873 253 93 99 chr6 75068912 75070059 -114209495 + L1M4b LINE L1 2177 3273 -3684 1909 170 102 5 chr6 75070169 75070551 -114209003 + MSTB1 LTR MaLR 1 419 -13 1713 270 124 22 chr6 75070641 75071270 -114208284 + L1M4b LINE L1 3486 4050 -2907 2093 87 0 4 chr6 75071270 75071547 -114208007 + AluY SINE Alu 5 280 -31 1032 150 0 0 chr6 75071552 75071768 -114207786 + (TA)n Simple_repeat Simple_repeat 1 216 0 1713 270 124 22 chr6 75071768 75072140 -114207414 + L1M4b LINE L1 4053 4599 -2358 10969 61 1 3 chr6 75072199 75073646 -114205908 - L1PA5 LINE L1 -2167 3979 2536 11188 43 1 2 chr6 75073646 75075794 -114203760 + L1PA5 LINE L1 4009 6150 -4 622 253 33 44 chr6 75075836 75076109 -114203445 + L1M4b LINE L1 4686 4955 -2002 4815 189 31 26 chr6 75076316 75077876 -114201678 - L1PA16 LINE L1 -9 6157 4591 1252 273 105 34 chr6 75077897 75078697 -114200857 + L1M4b LINE L1 5226 6082 -875 895 327 47 67 chr6 75078961 75079705 -114199849 + L1PB1 LINE L1 2 730 -6119 421 284 26 52 chr6 75079926 75080158 -114199396 + L1PB1 LINE L1 1333 1558 -5291 4049 242 57 20 chr6 75080208 75080378 -114199176 + L1PB1 LINE L1 1381 1543 -5306 1818 93 0 12 chr6 75080378 75080625 -114198929 - AluSg/x SINE Alu -3 309 66 4049 242 57 20 chr6 75080625 75082467 -114197087 + L1PB1 LINE L1 1543 3512 -3337 2179 129 0 0 chr6 75082467 75082776 -114196778 + AluSc SINE Alu 1 309 0 4049 242 57 20 chr6 75082776 75083288 -114196266 + L1PB1 LINE L1 3512 4004 -2845 * 5903 125 18 2 chr6 75083265 75084291 -114195263 + L1PA14 LINE L1 5820 6857 -7 7314 219 36 30 chr6 75084298 75086275 -114193279 + L1 LINE L1 3992 5980 -869 455 84 56 0 chr6 75086260 75086331 -114193223 + L1PB4 LINE L1 5644 5718 -438 * 1424 175 68 0 chr6 75086360 75086652 -114192902 + L1PB4 LINE L1 5844 6155 -1 245 319 58 0 chr6 75087518 75087587 -114191967 - L2 LINE L2 0 3272 3200 559 209 21 99 chr6 75087835 75088026 -114191528 - LTR40a LTR ERVL -2 517 342 387 73 0 0 chr6 75088162 75088217 -114191337 + (CA)n Simple_repeat Simple_repeat 2 56 0 180 0 0 0 chr6 75088216 75088236 -114191318 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 1248 99 0 17 chr6 75088236 75088408 -114191146 - AluSg/x SINE Alu -13 299 131 245 106 0 21 chr6 75089101 75089148 -114190406 + (TA)n Simple_repeat Simple_repeat 1 46 0 277 81 24 73 chr6 75089235 75089358 -114190196 + (TATAA)n Simple_repeat Simple_repeat 1 117 0 5605 169 19 41 chr6 75089643 75090357 -114189197 + L1PB1 LINE L1 4703 5431 -1423 3601 18 5 18 chr6 75090357 75090800 -114188754 + L1PA3 LINE L1 5717 6153 -2 5605 169 19 41 chr6 75090800 75091909 -114187645 + L1PB1 LINE L1 5431 6563 -291 231 36 0 0 chr6 75091909 75091937 -114187617 + (CA)n Simple_repeat Simple_repeat 1 28 0 5605 169 19 41 chr6 75091937 75092193 -114187361 + L1PB1 LINE L1 6563 6732 -122 2278 61 20 0 chr6 75092193 75092488 -114187066 + AluY SINE Alu 1 301 -10 5605 169 19 41 chr6 75092488 75092609 -114186945 + L1PB1 LINE L1 6732 6854 0 1198 245 59 56 chr6 75093295 75093756 -114185798 + LTR40b LTR ERVL 1 462 0 222 118 0 0 chr6 75093809 75093843 -114185711 + (CA)n Simple_repeat Simple_repeat 1 34 0 29 0 0 0 chr6 75094279 75094308 -114185246 + AT_rich Low_complexity Low_complexity 1 29 0 246 331 52 10 chr6 75094943 75095050 -114184504 - MIR SINE MIR -63 145 38 2426 106 53 3 chr6 75095129 75095508 -114184046 + MER51C LTR ERV1 243 640 0 2128 178 70 3 chr6 75096582 75096970 -114182584 - LTR28 LTR ERV1 -606 414 1 202 373 102 17 chr6 75098887 75099064 -114180490 - L2 LINE L2 -693 2621 2430 2567 51 0 3 chr6 75099319 75099631 -114179923 - AluY SINE Alu 0 311 1 17742 118 34 5 chr6 75099824 75102425 -114177129 - Charlie3 DNA MER1_type -4 2706 31 269 280 140 13 chr6 75103478 75103628 -114175926 + MIR SINE MIR 90 258 -4 1770 256 149 13 chr6 75103628 75104172 -114175382 + MLT1E2 LTR MaLR 1 618 -8 1598 148 16 0 chr6 75104463 75104719 -114174835 + AluSx SINE Alu 36 295 -17 2333 197 6 29 chr6 75104774 75105291 -114174263 - MLT1D LTR MaLR 0 505 1 198 192 0 0 chr6 75105579 75105631 -114173923 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 600 254 55 125 chr6 75105851 75106268 -114173286 - L2 LINE L2 -5 3308 2921 224 306 176 0 chr6 75106295 75106403 -114173151 - L2 LINE L2 0 3313 3187 273 296 28 63 chr6 75107864 75108006 -114171548 - MIR SINE MIR -124 138 2 182 320 93 33 chr6 75110437 75110587 -114168967 + L2 LINE L2 2372 2530 -784 215 320 134 0 chr6 75111109 75111206 -114168348 + L2 LINE L2 3158 3267 -5 22 0 0 0 chr6 75111579 75111601 -114167953 + AT_rich Low_complexity Low_complexity 1 22 0 1758 209 90 103 chr6 75112831 75113129 -114166425 - LTR1B LTR ERV1 -17 1003 703 2248 106 0 3 chr6 75113129 75113440 -114166114 - AluY SINE Alu -1 310 1 1758 209 90 103 chr6 75113440 75114077 -114165477 - LTR1B LTR ERV1 -317 703 1 291 308 77 23 chr6 75114098 75114228 -114165326 + MLT1I LTR MaLR 13 149 -260 441 150 0 12 chr6 75114457 75114537 -114165017 - MADE1 DNA Mariner -1 79 1 2122 100 3 3 chr6 75115290 75115580 -114163974 - AluSc SINE Alu -18 291 2 6717 68 8 0 chr6 75115892 75117126 -114162428 + L1PA7 LINE L1 4949 6154 0 188 0 0 69 chr6 75117344 75117373 -114162181 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 588 295 139 12 chr6 75117522 75117773 -114161781 - MER102a DNA MER1_type -9 321 39 21 0 0 0 chr6 75118765 75118786 -114160768 + AT_rich Low_complexity Low_complexity 1 21 0 2200 92 0 0 chr6 75120090 75120383 -114159171 - AluY SINE Alu -18 293 1 199 233 158 62 chr6 75121750 75121896 -114157658 - L2 LINE L2 -38 3275 3116 900 222 72 81 chr6 75122539 75122859 -114156695 + MER45B DNA AcHobo 61 389 -651 1079 238 72 34 chr6 75122966 75123005 -114156549 + MER45B DNA AcHobo 657 693 -888 1806 217 45 31 chr6 75123005 75123425 -114156129 + MSTB LTR MaLR 1 426 0 1079 238 72 34 chr6 75123425 75123656 -114155898 + MER45B DNA AcHobo 693 945 -636 1942 126 36 0 chr6 75123656 75123934 -114155620 - AluSq SINE Alu -22 291 4 1079 238 72 34 chr6 75123934 75124011 -114155543 + MER45B DNA AcHobo 945 1018 -22 2433 57 10 0 chr6 75125605 75125902 -114153652 - AluY SINE Alu -11 300 1 8434 159 34 9 chr6 75125902 75127377 -114152177 - Tigger1 DNA MER2_type -830 1588 77 724 268 4 40 chr6 75127418 75127646 -114151908 + L1MA10 LINE L1 6108 6327 -7 689 184 25 19 chr6 75130295 75130453 -114149101 - L1MB5 LINE L1 -8 6166 6008 787 252 112 25 chr6 75131055 75131297 -114148257 + MSTD LTR MaLR 23 285 -111 30 45 0 0 chr6 75131941 75131985 -114147569 + AT_rich Low_complexity Low_complexity 1 44 0 180 0 0 0 chr6 75132452 75132472 -114147082 + (TG)n Simple_repeat Simple_repeat 2 21 0 1784 133 11 71 chr6 75133411 75133765 -114145789 - L1MB1 LINE L1 -6 6162 5830 1066 149 67 34 chr6 75133767 75133889 -114145665 + L1MB1 LINE L1 5629 5762 -406 1684 155 191 8 chr6 75133889 75134251 -114145303 + MSTA LTR MaLR 1 428 0 1066 149 67 34 chr6 75134251 75134336 -114145218 + L1MB1 LINE L1 5762 5843 -325 2128 133 0 0 chr6 75134547 75134847 -114144707 + AluSq SINE Alu 1 300 -13 300 125 18 0 chr6 75137247 75137303 -114142251 - L1PA4 LINE L1 -4 6151 6095 180 0 0 0 chr6 75138202 75138222 -114141332 + (T)n Simple_repeat Simple_repeat 1 20 0 184 338 106 0 chr6 75138421 75138572 -114140982 + L2 LINE L2 2456 2622 -692 180 100 40 20 chr6 75139234 75139284 -114140270 + (TA)n Simple_repeat Simple_repeat 1 51 0 24 53 0 0 chr6 75141225 75141263 -114138291 + AT_rich Low_complexity Low_complexity 1 38 0 2282 73 0 58 chr6 75141618 75141946 -114137608 - AluY SINE Alu -2 309 1 26 82 0 0 chr6 75142109 75142170 -114137384 + AT_rich Low_complexity Low_complexity 1 61 0 214 154 58 0 chr6 75142535 75142587 -114136967 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 712 189 44 82 chr6 75142662 75142868 -114136686 - MER52A LTR ERV1 -208 1547 1350 * 3470 188 185 57 chr6 75142861 75143864 -114135690 - MER52A LTR ERV1 -623 1132 1 21 36 0 0 chr6 75144532 75144560 -114134994 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr6 75145286 75145309 -114134245 + AT_rich Low_complexity Low_complexity 1 23 0 40 49 0 0 chr6 75145420 75145481 -114134073 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr6 75145763 75145786 -114133768 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 75146225 75146246 -114133308 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr6 75147248 75147283 -114132271 + AT_rich Low_complexity Low_complexity 1 35 0 566 116 70 29 chr6 75147716 75147888 -114131666 + CT-rich Low_complexity Low_complexity 2 180 0 24 0 0 0 chr6 75148562 75148586 -114130968 + AT_rich Low_complexity Low_complexity 1 24 0 1990 124 3 20 chr6 75150086 75150392 -114129162 - AluSg SINE Alu -9 301 1 1034 143 90 11 chr6 75151008 75151197 -114128357 - MER1B DNA MER1_type 0 339 136 2329 88 0 7 chr6 75151481 75151787 -114127767 - AluSx SINE Alu -8 304 1 1029 220 47 24 chr6 75153379 75153634 -114125920 + L1PA15-16 LINE L1 2 262 -6587 * 4893 257 89 53 chr6 75153614 75154778 -114124776 + L1PA15-16 LINE L1 709 1830 -5019 258 56 0 0 chr6 75154778 75154814 -114124740 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4893 257 89 53 chr6 75154814 75158203 -114121351 + L1PA15-16 LINE L1 1830 5417 -1432 462 36 0 0 chr6 75158204 75158260 -114121294 + (CA)n Simple_repeat Simple_repeat 2 57 0 2169 151 6 0 chr6 75158260 75158611 -114120943 + L1PB4 LINE L1 5796 6148 -8 2154 62 39 23 chr6 75160440 75160459 -114119095 - AluY SINE Alu 0 311 294 387 0 0 0 chr6 75160459 75160502 -114119052 + (TG)n Simple_repeat Simple_repeat 2 44 0 2154 62 39 23 chr6 75160502 75160788 -114118766 - AluY SINE Alu -17 294 1 252 62 0 0 chr6 75161561 75161621 -114117933 + Alu SINE Alu 252 311 0 21 36 0 0 chr6 75162096 75162124 -114117430 + AT_rich Low_complexity Low_complexity 1 28 0 455 252 18 0 chr6 75162754 75162865 -114116689 - MER81 DNA DNA 0 114 2 233 282 91 45 chr6 75163766 75163876 -114115678 + MIR SINE MIR 89 203 -59 1884 106 88 0 chr6 75163934 75164207 -114115347 - AluSc SINE Alu -12 297 1 1312 154 37 40 chr6 75164355 75164653 -114114901 + L1MA7 LINE L1 5995 6291 0 240 86 0 0 chr6 75165123 75165158 -114114396 + (CA)n Simple_repeat Simple_repeat 2 36 0 25 65 0 0 chr6 75165548 75165594 -114113960 + AT_rich Low_complexity Low_complexity 1 46 0 1508 191 139 18 chr6 75165651 75166033 -114113521 - MSTA LTR MaLR 0 428 1 7057 147 8 9 chr6 75166033 75167183 -114112371 - MSTA-int LTR MaLR 0 1580 432 1844 144 7 0 chr6 75167183 75167486 -114112068 - AluSp SINE Alu 0 308 4 202 200 44 0 chr6 75167742 75167787 -114111767 + CT-rich Low_complexity Low_complexity 3 49 0 2165 128 0 0 chr6 75167821 75168119 -114111435 + AluSg SINE Alu 1 298 -12 315 0 0 0 chr6 75168119 75168154 -114111400 + (TA)n Simple_repeat Simple_repeat 2 36 0 4780 149 16 20 chr6 75168613 75169503 -114110051 - L1MA5A LINE L1 -5 6292 5407 665 201 39 124 chr6 75170757 75171016 -114108538 - MER58 DNA MER1_type -2160 260 24 271 390 49 15 chr6 75171121 75171326 -114108228 - L2 LINE L2 -165 3107 2896 204 214 0 0 chr6 75171399 75171455 -114108099 + (TA)n Simple_repeat Simple_repeat 2 57 0 200 314 40 32 chr6 75172432 75172556 -114106998 + L2 LINE L2 1906 2030 -1284 752 302 118 51 chr6 75172623 75173392 -114106162 - L1M4 LINE L1 -2756 3390 2570 22 0 0 0 chr6 75173571 75173593 -114105961 + AT_rich Low_complexity Low_complexity 1 22 0 2924 135 0 4 chr6 75173831 75174304 -114105250 - L1MA3 LINE L1 0 6305 5835 5489 141 39 0 chr6 75174450 75175491 -114104063 - L1PA15 LINE L1 -3 6162 5064 405 273 50 22 chr6 75176921 75177060 -114102494 + MIR SINE MIR 47 189 -73 1630 135 163 9 chr6 75178405 75178730 -114100824 - THE1C LTR MaLR 0 375 1 485 254 47 10 chr6 75180118 75180311 -114099243 + L1M4 LINE L1 5186 5385 -761 5100 177 45 8 chr6 75180328 75181347 -114098207 + L1MC2 LINE L1 5279 6335 -9 1487 182 33 7 chr6 75181905 75182207 -114097347 + L1PB4 LINE L1 5847 6156 0 24 0 0 0 chr6 75182285 75182309 -114097245 + AT_rich Low_complexity Low_complexity 1 24 0 592 159 0 9 chr6 75182663 75182770 -114096784 + MER53 DNA DNA 1 106 -83 471 256 8 16 chr6 75182778 75182903 -114096651 + MER5B DNA MER1_type 54 177 -1 1200 95 12 0 chr6 75182962 75183130 -114096424 + AluY SINE Alu 136 305 -6 249 259 0 0 chr6 75183517 75183571 -114095983 + MIR SINE MIR 91 144 -64 1980 212 75 2 chr6 75184410 75184825 -114094729 + MER44D DNA MER2_type 1 500 -105 252 78 0 78 chr6 75184828 75184892 -114094662 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 343 250 95 0 chr6 75184900 75184984 -114094570 + MER44D DNA MER2_type 513 604 -1 303 233 85 23 chr6 75185640 75185769 -114093785 - L1 LINE L1 -2801 3345 3209 525 275 12 31 chr6 75185982 75186142 -114093412 + L2 LINE L2 3153 3309 -4 207 0 0 0 chr6 75186193 75186216 -114093338 + (TTG)n Simple_repeat Simple_repeat 2 24 0 437 324 63 93 chr6 75186238 75186511 -114093043 - L1MEd LINE L1 -5600 519 264 524 259 23 8 chr6 75186511 75186642 -114092912 + FLAM_A SINE Alu 1 133 0 437 324 63 93 chr6 75186642 75186841 -114092713 - L1MEd LINE L1 -5855 264 61 428 279 0 109 chr6 75187238 75187385 -114092169 - L2 LINE L2 -2 3311 3181 2322 123 0 14 chr6 75187736 75188087 -114091467 - LTR9B LTR ERV1 -84 560 215 1393 290 69 10 chr6 75188298 75188802 -114090752 - HERV16-A2 LTR ERVL -4454 542 9 255 270 87 32 chr6 75189062 75189188 -114090366 - HAL1 LINE L1 -1136 1371 1239 35 71 0 0 chr6 75189221 75189291 -114090263 + AT_rich Low_complexity Low_complexity 1 70 0 1068 297 77 69 chr6 75189291 75190472 -114089082 - HAL1 LINE L1 -1309 1198 8 22 0 0 0 chr6 75191357 75191379 -114088175 + AT_rich Low_complexity Low_complexity 1 22 0 393 139 63 0 chr6 75191749 75191828 -114087726 + L1PA16 LINE L1 6080 6163 -3 2157 200 22 13 chr6 75193497 75193948 -114085606 + L1PA16 LINE L1 5704 6158 -8 21 36 0 0 chr6 75194968 75194996 -114084558 + AT_rich Low_complexity Low_complexity 1 28 0 1082 211 188 37 chr6 75195464 75195847 -114083707 + MSTB2 LTR MaLR 15 455 -2 21 36 0 0 chr6 75196076 75196104 -114083450 + AT_rich Low_complexity Low_complexity 1 28 0 294 73 0 0 chr6 75196209 75196250 -114083304 + (CA)n Simple_repeat Simple_repeat 2 42 0 29 0 0 0 chr6 75197596 75197625 -114081929 + AT_rich Low_complexity Low_complexity 1 29 0 267 232 182 10 chr6 75198301 75198400 -114081154 + MIR SINE MIR 137 252 -10 304 233 22 0 chr6 75200806 75200896 -114078658 + L1MC/D LINE L1 5711 5802 -2006 24 0 0 0 chr6 75200931 75200955 -114078599 + AT_rich Low_complexity Low_complexity 1 24 0 1952 148 117 5 chr6 75201469 75201854 -114077700 - L1PA16 LINE L1 -21 6145 5718 276 181 0 188 chr6 75201863 75202001 -114077553 - L1MDa LINE L1 -4505 2035 1924 2094 168 39 53 chr6 75202345 75202901 -114076653 - MLT2A2 LTR ERVL 0 554 1 332 331 87 29 chr6 75203310 75203724 -114075830 + L1MC4a LINE L1 4720 5157 -989 254 252 62 15 chr6 75203792 75203972 -114075582 + L1MC4a LINE L1 5255 5448 -739 306 286 0 0 chr6 75204085 75204176 -114075378 + L1MC4a LINE L1 5793 5883 -1925 215 244 0 0 chr6 75204279 75204320 -114075234 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 447 264 90 13 chr6 75204562 75204717 -114074837 - MIR SINE MIR -28 234 68 279 269 59 17 chr6 75204799 75204918 -114074636 - MIR SINE MIR -57 205 82 279 302 132 11 chr6 75207550 75207739 -114071815 - MIR SINE MIR 0 262 51 765 333 46 34 chr6 75208946 75209397 -114070157 + L2 LINE L2 2785 3241 -72 198 71 0 0 chr6 75209873 75209901 -114069653 + (TA)n Simple_repeat Simple_repeat 2 29 0 21 71 0 0 chr6 75210597 75210639 -114068915 + AT_rich Low_complexity Low_complexity 1 42 0 204 40 0 0 chr6 75210647 75210672 -114068882 + (TA)n Simple_repeat Simple_repeat 1 25 0 284 289 169 28 chr6 75210966 75211108 -114068446 + MER5B DNA MER1_type 4 165 -13 568 274 90 43 chr6 75211838 75212349 -114067205 + L1MCc LINE L1 1315 2021 -4887 409 379 53 7 chr6 75212350 75212635 -114066919 + ERVL LTR ERVL 3127 3424 -2340 261 349 55 25 chr6 75212815 75213053 -114066501 + ERVL LTR ERVL 3625 3869 -1785 348 368 95 7 chr6 75213083 75213387 -114066167 + ERVL LTR ERVL 3911 4241 -1413 186 103 0 0 chr6 75214473 75214502 -114065052 + (ATG)n Simple_repeat Simple_repeat 1 29 0 1694 199 30 60 chr6 75215261 75215698 -114063856 + L1MA10 LINE L1 5900 6323 -11 254 236 0 0 chr6 75215725 75215780 -114063774 + MIR SINE MIR 146 200 -62 354 296 40 40 chr6 75217114 75217266 -114062288 - MER69A DNA AcHobo -24 153 2 368 259 63 68 chr6 75217956 75218161 -114061393 + MER63A DNA MER1_type 7 210 0 26 30 0 0 chr6 75219188 75219221 -114060333 + AT_rich Low_complexity Low_complexity 1 33 0 321 296 164 3 chr6 75219755 75220133 -114059421 + L1ME4a LINE L1 5679 6117 -4 1659 170 24 27 chr6 75220156 75220486 -114059068 + L1 LINE L1 3905 4233 -1913 327 59 0 88 chr6 75220489 75220591 -114058963 + (TA)n Simple_repeat Simple_repeat 1 93 0 673 177 7 14 chr6 75220600 75220741 -114058813 + L1 LINE L1 4226 4365 -1781 968 196 0 16 chr6 75220741 75220928 -114058626 + L1PB4 LINE L1 5971 6156 0 393 75 0 0 chr6 75221528 75221581 -114057973 + (CA)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chr6 75222238 75222261 -114057293 + AT_rich Low_complexity Low_complexity 1 23 0 1055 209 36 105 chr6 75222511 75222903 -114056651 - MLT1A1 LTR MaLR 0 365 1 184 350 12 25 chr6 75222990 75223070 -114056484 + MIR SINE MIR 14 92 -170 443 249 160 6 chr6 75223723 75223904 -114055650 - MER3 DNA MER1_type 0 209 1 339 194 202 0 chr6 75223932 75224056 -114055498 - MER106B DNA MER1_type -15 1044 896 244 351 0 0 chr6 75224561 75224638 -114054916 - MER63 DNA MER1_type -1 1059 983 380 328 0 15 chr6 75224644 75224775 -114054779 - MER63 DNA MER1_type -81 755 1 501 56 44 67 chr6 75225257 75225347 -114054207 + THE1B LTR MaLR 1 88 -276 9082 119 108 1 chr6 75225347 75226752 -114052802 + THE1A-int LTR MaLR 25 1580 0 2355 108 11 6 chr6 75226752 75227105 -114052449 + THE1A LTR MaLR 1 355 0 598 253 27 16 chr6 75277336 75277522 -114002032 - MER90 LTR ERV1 -334 280 93 219 69 0 0 chr6 75277627 75277656 -114001898 + (TG)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr6 75277755 75277777 -114001777 + AT_rich Low_complexity Low_complexity 1 22 0 388 132 15 0 chr6 75278301 75278369 -114001185 - L1MB7 LINE L1 -6 6676 6608 1495 146 65 60 chr6 75278370 75278466 -114001088 - MER44D DNA MER2_type -1882 609 515 1427 191 62 36 chr6 75278466 75278822 -114000732 - MER47A DNA MER2_type 0 366 2 1495 146 65 60 chr6 75278822 75278961 -114000593 - MER44D DNA MER2_type -1976 515 378 198 0 0 0 chr6 75278961 75278983 -114000571 + (TC)n Simple_repeat Simple_repeat 1 22 0 1495 146 65 60 chr6 75278983 75279082 -114000472 - MER44D DNA MER2_type -2113 378 2 3706 259 93 22 chr6 75279087 75281892 -113997662 - L1MB7 LINE L1 -79 6603 3593 1492 271 74 30 chr6 75281862 75283163 -113996391 - L1MB7 LINE L1 -3856 2788 1345 * 6369 173 33 27 chr6 75283174 75285364 -113994190 - L1PA7 LINE L1 -2 6650 16 216 338 81 38 chr6 75285440 75285600 -113993954 + MIR SINE MIR 25 191 -71 189 0 0 0 chr6 75286838 75286859 -113992695 + (T)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr6 75287084 75287119 -113992435 + AT_rich Low_complexity Low_complexity 1 35 0 281 275 56 23 chr6 75287129 75287271 -113992283 - L1MC/D LINE L1 -456 5665 5544 233 401 19 13 chr6 75287315 75287472 -113992082 - MIR SINE MIR -71 191 34 394 245 38 0 chr6 75287791 75287897 -113991657 + L1MEc LINE L1 1926 2035 -4361 922 207 53 57 chr6 75288019 75288318 -113991236 - MLT1C LTR MaLR -163 304 7 24 32 0 0 chr6 75288578 75288609 -113990945 + AT_rich Low_complexity Low_complexity 1 31 0 635 237 0 26 chr6 75289213 75289369 -113990185 - L1ME2 LINE L1 -22 6142 5991 1077 299 46 60 chr6 75290525 75291137 -113988417 + L1PA15-16 LINE L1 2 604 -6245 570 267 63 108 chr6 75291404 75291940 -113987614 + L1M2 LINE L1 818 1376 -5473 2550 103 3 11 chr6 75291940 75292298 -113987256 + THE1A LTR MaLR 1 355 0 11563 89 9 1 chr6 75292298 75293865 -113985689 + THE1A-int LTR MaLR 1 1580 0 2529 111 6 0 chr6 75293865 75294218 -113985336 + THE1A LTR MaLR 1 355 0 570 267 63 108 chr6 75294218 75294367 -113985187 + L1M2 LINE L1 1373 1674 -5175 303 257 0 0 chr6 75294612 75294686 -113984868 + L1PA12 LINE L1 7 80 -7501 21 0 0 0 chr6 75295838 75295859 -113983695 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 75295987 75296014 -113983540 + AT_rich Low_complexity Low_complexity 1 27 0 225 108 0 0 chr6 75297887 75297924 -113981630 + (A)n Simple_repeat Simple_repeat 1 37 0 1532 106 9 9 chr6 75297935 75298162 -113981392 + AluSg/x SINE Alu 83 309 -1 260 360 92 19 chr6 75298538 75298799 -113980755 + L2 LINE L2 2380 2659 -655 222 37 0 0 chr6 75298848 75298875 -113980679 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1538 182 39 6 chr6 75299485 75299815 -113979739 - L1MA8 LINE L1 -3 6288 5948 2184 99 0 3 chr6 75300053 75300347 -113979207 - AluSc SINE Alu -11 298 6 309 304 72 43 chr6 75301397 75301585 -113977969 + MIR SINE MIR 16 201 -61 200 302 48 0 chr6 75301764 75301827 -113977727 - MIR SINE MIR -36 226 161 257 290 54 0 chr6 75302220 75302313 -113977241 + MER94 DNA DNA 34 131 -3 231 208 21 0 chr6 75302788 75302836 -113976718 + CT-rich Low_complexity Low_complexity 3 51 0 3198 185 13 2 chr6 75303464 75304069 -113975485 + L1PA16 LINE L1 5554 6165 -1 22 0 0 0 chr6 75304552 75304574 -113974980 + AT_rich Low_complexity Low_complexity 1 22 0 366 301 14 14 chr6 75305361 75305504 -113974050 + MLT1K LTR MaLR 446 588 0 23 0 0 0 chr6 75306492 75306515 -113973039 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr6 75307517 75307572 -113971982 + AT_rich Low_complexity Low_complexity 1 55 0 314 372 83 0 chr6 75308103 75308259 -113971295 - L2 LINE L2 0 3272 3104 4927 171 94 8 chr6 75308267 75309207 -113970347 + LTR28 LTR ERV1 1 1020 0 424 272 108 75 chr6 75309246 75309514 -113970040 + LTR16C LTR ERVL 215 491 0 1456 202 27 17 chr6 75309971 75310263 -113969291 + AluJo SINE Alu 1 295 -17 44 84 0 0 chr6 75311123 75311230 -113968324 + AT_rich Low_complexity Low_complexity 1 107 0 21 36 0 0 chr6 75311378 75311406 -113968148 + AT_rich Low_complexity Low_complexity 1 28 0 631 214 26 0 chr6 75312090 75312207 -113967347 - Tigger3(Golem) DNA MER2_type 0 3038 2919 363 225 11 45 chr6 75312207 75312296 -113967258 - Tigger3(Golem) DNA MER2_type -2943 86 1 561 303 70 3 chr6 75313082 75313425 -113966129 - L1MEc LINE L1 -3913 2483 2118 26 50 0 0 chr6 75314167 75314207 -113965347 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr6 75315220 75315241 -113964313 + AT_rich Low_complexity Low_complexity 1 21 0 269 329 88 12 chr6 75315503 75315757 -113963797 - L1ME LINE L1 -291 5879 5607 304 307 60 36 chr6 75315838 75316004 -113963550 - L1ME LINE L1 -676 5494 5325 198 0 0 0 chr6 75316004 75316026 -113963528 + (TA)n Simple_repeat Simple_repeat 1 22 0 8329 89 3 13 chr6 75316027 75317953 -113961601 - L1PA7 LINE L1 -108 6361 4458 * 13057 125 7 36 chr6 75317928 75321180 -113958374 - L1PA7 LINE L1 -3224 3237 9 416 319 99 60 chr6 75321206 75321951 -113957603 - L1ME LINE L1 -844 5302 4529 543 280 49 31 chr6 75322018 75322405 -113957149 - ERVL LTR ERVL -3073 2434 2142 537 353 66 15 chr6 75322483 75322950 -113956604 - ERVL LTR ERVL -3618 2036 1546 22 70 0 0 chr6 75323192 75323235 -113956319 + AT_rich Low_complexity Low_complexity 1 43 0 230 242 0 32 chr6 75323401 75323525 -113956029 + (TA)n Simple_repeat Simple_repeat 2 121 0 26 0 0 0 chr6 75325014 75325040 -113954514 + AT_rich Low_complexity Low_complexity 1 26 0 8197 66 10 7 chr6 75326757 75327824 -113951730 - MER11C LTR ERVK 0 1071 1 231 300 94 47 chr6 75328538 75328708 -113950846 + L3 LINE CR1 425 602 -975 1220 178 27 27 chr6 75328896 75329194 -113950360 - L1MA6 LINE L1 -12 6288 5991 1084 183 0 0 chr6 75329207 75329404 -113950150 + L1MA5 LINE L1 5752 5948 -352 2740 39 0 0 chr6 75329877 75330212 -113949342 - L1PA4 LINE L1 0 6155 5821 22 56 0 0 chr6 75330394 75330430 -113949124 + AT_rich Low_complexity Low_complexity 1 36 0 278 296 40 16 chr6 75332107 75332232 -113947322 - MLT1L LTR MaLR -22 593 466 198 227 13 107 chr6 75332858 75332933 -113946621 - MIR SINE MIR -136 126 59 22 88 0 0 chr6 75333852 75333909 -113945645 + AT_rich Low_complexity Low_complexity 1 57 0 182 330 126 19 chr6 75334258 75334361 -113945193 + L2 LINE L2 2942 3055 -217 323 297 44 39 chr6 75335648 75335830 -113943724 - L2 LINE L2 -13 3300 3118 24 53 0 0 chr6 75336368 75336406 -113943148 + AT_rich Low_complexity Low_complexity 1 38 0 225 226 26 0 chr6 75336467 75336582 -113942972 + (TA)n Simple_repeat Simple_repeat 2 119 0 511 306 54 4 chr6 75337365 75337626 -113941928 - HAL1 LINE L1 -113 2394 2121 583 359 37 41 chr6 75337627 75338112 -113941442 - HAL1 LINE L1 -1342 1165 683 2346 327 122 17 chr6 75338706 75339084 -113940470 + L2 LINE L2 1181 1518 -1795 1996 115 28 3 chr6 75339084 75339370 -113940184 - AluSx SINE Alu -19 293 1 2346 327 122 17 chr6 75339370 75340852 -113938702 + L2 LINE L2 1518 3308 -5 452 352 65 15 chr6 75342486 75342810 -113936744 + LTR16C LTR ERVL 152 491 0 1601 194 5 29 chr6 75343482 75343864 -113935690 - L1MA7 LINE L1 -1 6290 5918 2054 118 75 23 chr6 75343925 75344271 -113935283 + THE1B LTR MaLR 1 364 0 254 290 86 0 chr6 75344472 75344565 -113934989 - L2 LINE L2 -19 3294 3194 495 354 92 0 chr6 75344952 75345246 -113934308 + MER102b DNA MER1_type 17 337 -4 3182 164 35 58 chr6 75346229 75347047 -113932507 - L1M4c LINE L1 -5006 1378 579 477 252 0 0 chr6 75347054 75347169 -113932385 - L1M4 LINE L1 -455 5729 5615 510 375 86 21 chr6 75347170 75347953 -113931601 + L2 LINE L2 2395 3229 -84 210 330 43 21 chr6 75349030 75349124 -113930430 + L2 LINE L2 3203 3298 -15 34 65 0 0 chr6 75349166 75349228 -113930326 + AT_rich Low_complexity Low_complexity 1 62 0 24 0 0 0 chr6 75350613 75350637 -113928917 + AT_rich Low_complexity Low_complexity 1 24 0 565 353 75 22 chr6 75351354 75351756 -113927798 + L2 LINE L2 2395 2817 -497 2130 112 14 0 chr6 75352277 75352564 -113926990 - AluSq SINE Alu -19 294 4 2194 116 7 0 chr6 75352637 75352938 -113926616 + AluSc SINE Alu 1 303 -6 22 35 0 0 chr6 75353028 75353057 -113926497 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 75353461 75353484 -113926070 + AT_rich Low_complexity Low_complexity 1 23 0 401 292 111 48 chr6 75353854 75354546 -113925008 + L1MEc LINE L1 831 1566 -4830 588 255 53 63 chr6 75354551 75354862 -113924692 + L1MCc LINE L1 1254 1566 -4856 280 253 121 44 chr6 75354881 75355063 -113924491 + L1MC2 LINE L1 26 221 -6205 * 1038 227 242 16 chr6 75355062 75355670 -113923884 + L1MC2 LINE L1 1439 2183 -4243 6677 182 163 13 chr6 75355675 75357118 -113922436 + MER52A LTR ERV1 97 1755 0 465 222 91 54 chr6 75357118 75357339 -113922215 + L1MC2 LINE L1 2180 2408 -4018 893 184 22 22 chr6 75357425 75357512 -113922042 - L1 LINE L1 -1542 4604 4518 2027 148 73 14 chr6 75357512 75357856 -113921698 - THE1B LTR MaLR 0 364 1 893 184 22 22 chr6 75357856 75357996 -113921558 - L1 LINE L1 -1627 4519 4377 293 226 19 0 chr6 75358016 75358122 -113921432 + (TA)n Simple_repeat Simple_repeat 2 109 0 2189 218 32 20 chr6 75358133 75358687 -113920867 - L1 LINE L1 -1799 4347 3787 * 3423 181 44 19 chr6 75358666 75360029 -113919525 + L1MA7 LINE L1 4601 5990 -301 330 273 40 0 chr6 75360049 75360148 -113919406 + L1MC2 LINE L1 3243 3345 -3081 1282 242 52 48 chr6 75360164 75360722 -113918832 + L1MC2 LINE L1 5049 5608 -818 1619 192 7 3 chr6 75360722 75361014 -113918540 + AluJb SINE Alu 1 293 -19 3583 203 67 3 chr6 75361043 75361823 -113917731 + L1MC2 LINE L1 5769 6598 -26 228 324 70 46 chr6 75361955 75362129 -113917425 + L1MEc LINE L1 1207 1375 -5021 204 97 0 0 chr6 75362129 75362160 -113917394 + (CA)n Simple_repeat Simple_repeat 2 32 0 228 324 70 46 chr6 75362160 75362399 -113917155 + L1MEc LINE L1 1375 1630 -4766 7228 40 14 0 chr6 75362567 75363662 -113915892 - L1PA4 LINE L1 -2 6153 5046 424 238 48 14 chr6 75364027 75364174 -113915380 - L1MEc LINE L1 -4365 2031 1880 1393 259 25 20 chr6 75364350 75364747 -113914807 - MLT1C LTR MaLR -4 463 65 2997 94 12 0 chr6 75364775 75365179 -113914375 - MLT2A2 LTR ERVL -44 409 1 1143 263 37 83 chr6 75365265 75365332 -113914222 - MLT1C-int LTR MaLR -11 1360 1291 2340 115 35 58 chr6 75365332 75365767 -113913787 - L1PA13 LINE L1 -3 6160 5736 1143 263 37 83 chr6 75365767 75366133 -113913421 - MLT1C-int LTR MaLR -80 1291 947 281 281 141 15 chr6 75366996 75367131 -113912423 + L3 LINE CR1 1276 1427 -150 1125 282 59 10 chr6 75367273 75367842 -113911712 + MLT1E2 LTR MaLR 1 621 -5 45 0 0 0 chr6 75368037 75368082 -113911472 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr6 75369856 75369877 -113909677 + AT_rich Low_complexity Low_complexity 1 21 0 261 116 93 0 chr6 75369980 75370023 -113909531 - MLT2B1 LTR ERVL 0 515 469 214 162 27 0 chr6 75370023 75370060 -113909494 + (CA)n Simple_repeat Simple_repeat 1 38 0 1063 241 43 44 chr6 75370093 75370450 -113909104 - MLT2B1 LTR ERVL -48 366 12 189 0 0 0 chr6 75371774 75371795 -113907759 + (GA)n Simple_repeat Simple_repeat 2 22 0 316 186 0 0 chr6 75371832 75371891 -113907663 - HsTC2 DNA Tc2 -2 1896 1838 1552 204 0 13 chr6 75372009 75372308 -113907246 - AluJb SINE Alu -11 301 7 2355 108 11 6 chr6 75373136 75373489 -113906065 - THE1A LTR MaLR 0 355 1 9133 116 108 1 chr6 75373489 75374894 -113904660 - THE1A-int LTR MaLR 0 1580 25 501 56 44 67 chr6 75374894 75374984 -113904570 - THE1B LTR MaLR -276 88 1 380 328 0 15 chr6 75375466 75375597 -113903957 + MER63 DNA MER1_type 1 755 -81 244 351 0 0 chr6 75375603 75375680 -113903874 + MER63 DNA MER1_type 983 1059 -1 352 194 202 0 chr6 75376185 75376309 -113903245 + MER106B DNA MER1_type 896 1044 -15 481 238 160 6 chr6 75376337 75376518 -113903036 + MER3 DNA MER1_type 1 209 0 191 333 197 20 chr6 75377104 75377251 -113902303 - MIR SINE MIR -76 186 14 1062 214 33 102 chr6 75377338 75377730 -113901824 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr6 75377980 75378003 -113901551 + AT_rich Low_complexity Low_complexity 1 23 0 303 93 0 0 chr6 75378660 75378703 -113900851 + (TG)n Simple_repeat Simple_repeat 2 44 0 968 196 0 16 chr6 75379303 75379492 -113900062 - L1PB4 LINE L1 0 6156 5971 672 173 7 14 chr6 75379492 75379631 -113899923 - L1 LINE L1 -1783 4363 4226 348 49 0 88 chr6 75379638 75379740 -113899814 + (TA)n Simple_repeat Simple_repeat 1 93 0 1665 182 21 24 chr6 75379743 75380073 -113899481 - L1 LINE L1 -1913 4233 3905 355 297 158 3 chr6 75380096 75380476 -113899078 - L1ME4a LINE L1 -4 6117 5679 26 30 0 0 chr6 75381010 75381043 -113898511 + AT_rich Low_complexity Low_complexity 1 33 0 368 259 63 68 chr6 75382068 75382273 -113897281 - MER63A DNA MER1_type 0 210 7 234 286 61 41 chr6 75382963 75383061 -113896493 + MER69A DNA AcHobo 2 101 -76 1302 241 32 27 chr6 75383067 75383436 -113896118 + MER90 LTR ERV1 232 602 -12 2053 131 3 0 chr6 75384229 75384520 -113895034 + AluSx SINE Alu 1 292 -20 4874 145 9 3 chr6 75384599 75385379 -113894175 - L1PA16 LINE L1 -18 6148 5364 7068 234 48 29 chr6 75385402 75386731 -113892823 + L1P LINE L1 3037 4427 -1719 203 61 30 0 chr6 75386731 75386764 -113892790 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7068 234 48 29 chr6 75386764 75387578 -113891976 + L1P LINE L1 4427 5223 -923 2085 193 29 68 chr6 75387626 75388254 -113891300 + LTR5 LTR ERVK 277 879 -90 180 0 0 0 chr6 75388255 75388275 -113891279 + (A)n Simple_repeat Simple_repeat 1 20 0 381 172 112 3 chr6 75388275 75388407 -113891147 + L1 LINE L1 5211 5355 -791 23 68 0 0 chr6 75388478 75388522 -113891032 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr6 75389478 75389500 -113890054 + AT_rich Low_complexity Low_complexity 1 22 0 1000 227 45 10 chr6 75389794 75390107 -113889447 + MER33 DNA MER1_type 1 324 0 30 0 0 0 chr6 75391307 75391337 -113888217 + AT_rich Low_complexity Low_complexity 1 30 0 78 30 0 0 chr6 75391557 75391656 -113887898 + AT_rich Low_complexity Low_complexity 1 99 0 218 186 23 54 chr6 75391671 75391800 -113887754 + (TATAA)n Simple_repeat Simple_repeat 4 128 0 1919 224 107 72 chr6 75392265 75392891 -113886663 - MLT1E1 LTR MaLR 0 654 7 251 303 18 0 chr6 75393462 75393571 -113885983 + L1P LINE L1 3603 3713 -2433 301 271 78 31 chr6 75393715 75393844 -113885710 + L1M4 LINE L1 3881 4015 -2131 438 69 0 0 chr6 75393907 75393965 -113885589 + (TA)n Simple_repeat Simple_repeat 2 59 0 22 0 0 0 chr6 75394838 75394860 -113884694 + AT_rich Low_complexity Low_complexity 1 22 0 629 303 95 17 chr6 75394868 75395396 -113884158 + L1MEc LINE L1 1106 1674 -4722 267 370 0 10 chr6 75395405 75395505 -113884049 + MIR SINE MIR 13 111 -151 243 307 74 74 chr6 75395892 75396068 -113883486 + L2 LINE L2 3111 3286 -27 539 188 17 17 chr6 75397831 75397948 -113881606 + L1MA2 LINE L1 17 133 -7432 * 1035 174 23 38 chr6 75397940 75398017 -113881537 + L1MA2 LINE L1 5722 5799 -1766 1884 141 0 49 chr6 75398017 75398343 -113881211 + AluSx SINE Alu 1 310 -2 1035 174 23 38 chr6 75398343 75398530 -113881024 + L1MA2 LINE L1 5799 5982 -1583 538 267 25 25 chr6 75398979 75399140 -113880414 + MER61D LTR ERV1 338 498 -3 6729 132 19 17 chr6 75399140 75400881 -113878673 + L1MA2 LINE L1 5977 7723 0 315 209 47 23 chr6 75401224 75401353 -113878201 + (TA)n Simple_repeat Simple_repeat 1 132 0 998 169 0 6 chr6 75401363 75401540 -113878014 + AluSg/x SINE Alu 132 307 -2 2454 34 40 0 chr6 75401596 75401894 -113877660 + AluY SINE Alu 1 310 -1 216 0 0 0 chr6 75403006 75403030 -113876524 + (T)n Simple_repeat Simple_repeat 1 24 0 3952 114 8 11 chr6 75403776 75404390 -113875164 - L1PA13 LINE L1 -3 6160 5549 23 33 0 0 chr6 75404477 75404507 -113875047 + AT_rich Low_complexity Low_complexity 1 30 0 216 187 27 13 chr6 75404576 75404651 -113874903 + (TA)n Simple_repeat Simple_repeat 2 77 0 216 188 0 21 chr6 75405464 75405512 -113874042 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 1400 173 3 61 chr6 75405583 75405878 -113873676 + AluJo SINE Alu 5 282 -30 21 36 0 0 chr6 75407513 75407541 -113872013 + AT_rich Low_complexity Low_complexity 1 28 0 1977 147 3 3 chr6 75407880 75408179 -113871375 + AluSx SINE Alu 1 299 -13 187 368 35 23 chr6 75408308 75408395 -113871159 - L2 LINE L2 -13 3300 3213 24 77 0 0 chr6 75408508 75408560 -113870994 + AT_rich Low_complexity Low_complexity 1 52 0 279 93 0 0 chr6 75409079 75409122 -113870432 + (TG)n Simple_repeat Simple_repeat 2 44 0 1119 211 58 72 chr6 75409687 75410047 -113869507 - MLT1D LTR MaLR -147 358 4 238 360 90 24 chr6 75410205 75410416 -113869138 + L2 LINE L2 2565 2789 -525 2136 104 24 0 chr6 75410459 75410748 -113868806 - AluSx SINE Alu -16 296 1 239 306 113 32 chr6 75411034 75411158 -113868396 + L2 LINE L2 3137 3270 -2 571 324 65 25 chr6 75411862 75412140 -113867414 + LTR16A LTR ERVL 16 304 -146 329 361 85 19 chr6 75412310 75412570 -113866984 + HERV16 LTR ERVL 38 314 -4682 13914 158 41 31 chr6 75413135 75413495 -113866059 + Tigger2 DNA MER2_type 1 356 -2362 518 288 0 0 chr6 75413495 75413627 -113865927 - FLAM_A SINE Alu -1 132 1 13914 158 41 31 chr6 75413627 75415947 -113863607 + Tigger2 DNA MER2_type 356 2708 -10 28 0 0 0 chr6 75416160 75416188 -113863366 + AT_rich Low_complexity Low_complexity 1 28 0 268 290 90 20 chr6 75416371 75416471 -113863083 - L2 LINE L2 -1 3271 3165 414 304 40 14 chr6 75417478 75417626 -113861928 + MER5A DNA MER1_type 3 154 -35 21 71 0 0 chr6 75418426 75418468 -113861086 + AT_rich Low_complexity Low_complexity 1 42 0 1429 225 46 17 chr6 75419480 75419831 -113859723 - MLT1A1 LTR MaLR -4 361 1 11614 151 11 28 chr6 75419933 75420023 -113859531 + Tigger1 DNA MER2_type 30 120 -2298 1958 163 0 0 chr6 75420023 75420317 -113859237 - AluSx SINE Alu -12 300 7 11614 151 11 28 chr6 75420317 75422283 -113857271 + Tigger1 DNA MER2_type 120 2051 -367 628 158 20 0 chr6 75422279 75422380 -113857174 + Tigger1 DNA MER2_type 2316 2418 0 * 198 363 53 9 chr6 75424232 75424345 -113855209 - L2 LINE L2 0 3313 3196 447 368 49 20 chr6 75424387 75424634 -113854920 + L2 LINE L2 2676 2929 -385 361 300 13 60 chr6 75424668 75424818 -113854736 - MIR SINE MIR -107 155 13 540 274 101 34 chr6 75425221 75425695 -113853859 + Charlie7 DNA MER1_type 2101 2606 -6 22 0 0 0 chr6 75425826 75425848 -113853706 + AT_rich Low_complexity Low_complexity 1 22 0 21 82 0 0 chr6 75426661 75426710 -113852844 + AT_rich Low_complexity Low_complexity 1 49 0 399 271 94 67 chr6 75427074 75427329 -113852225 - Charlie8 DNA MER1_type -2137 280 19 27 49 0 0 chr6 75427632 75427673 -113851881 + AT_rich Low_complexity Low_complexity 1 41 0 336 171 125 11 chr6 75428785 75428873 -113850681 - MER53 DNA DNA 0 189 92 248 405 6 18 chr6 75430473 75430641 -113848913 + MER5B DNA MER1_type 13 178 0 23 86 0 0 chr6 75431057 75431115 -113848439 + AT_rich Low_complexity Low_complexity 1 58 0 254 194 16 0 chr6 75431640 75431702 -113847852 + CT-rich Low_complexity Low_complexity 2 64 0 183 325 26 105 chr6 75431714 75431828 -113847726 - L2 LINE L2 -21 3251 3147 384 325 16 8 chr6 75432227 75432353 -113847201 - MIR SINE MIR -72 190 64 234 62 0 0 chr6 75432525 75432557 -113846997 + (TA)n Simple_repeat Simple_repeat 2 33 0 237 83 0 0 chr6 75432593 75432629 -113846925 + (TA)n Simple_repeat Simple_repeat 2 37 0 209 175 70 0 chr6 75432637 75432694 -113846860 + (TTATA)n Simple_repeat Simple_repeat 4 64 0 209 56 37 37 chr6 75432715 75432769 -113846785 + (TTAAA)n Simple_repeat Simple_repeat 3 56 0 253 184 85 0 chr6 75432785 75432926 -113846628 + (TA)n Simple_repeat Simple_repeat 1 153 0 369 43 0 0 chr6 75432927 75432974 -113846580 + (CA)n Simple_repeat Simple_repeat 1 47 0 21 57 0 0 chr6 75435539 75435574 -113843980 + AT_rich Low_complexity Low_complexity 1 35 0 1553 17 0 0 chr6 75436324 75436500 -113843054 - L1P2 LINE L1 -369 5786 5611 * 3075 72 26 2 chr6 75436390 75436867 -113842687 + L1PA4 LINE L1 5657 6154 -1 27 0 0 0 chr6 75437037 75437064 -113842490 + AT_rich Low_complexity Low_complexity 1 27 0 2286 231 32 49 chr6 75437995 75438610 -113840944 + MER77 LTR ERV1 1 605 0 341 228 114 24 chr6 75439577 75439700 -113839854 - MLT1L LTR MaLR -343 272 139 21 0 0 0 chr6 75442362 75442383 -113837171 + AT_rich Low_complexity Low_complexity 1 21 0 3380 127 55 102 chr6 75442580 75443404 -113836150 + LTR1 LTR ERV1 1 785 0 1901 137 10 20 chr6 75443621 75443920 -113835634 + AluSx SINE Alu 1 296 -16 3747 181 61 14 chr6 75444037 75444826 -113834728 - LTR1B LTR ERV1 0 826 1 23 0 0 0 chr6 75444933 75444956 -113834598 + AT_rich Low_complexity Low_complexity 1 23 0 8769 50 3 0 chr6 75445833 75446901 -113832653 + MER11C LTR ERVK 1 1071 0 3800 74 44 0 chr6 75448122 75448625 -113830929 + LTR17 LTR ERV1 256 780 0 40662 53 24 11 chr6 75448625 75454461 -113825093 + HERV17 LTR ERV1 1 6022 -2604 290 77 0 0 chr6 75454451 75454490 -113825064 + HERV17 LTR ERV1 7510 7548 -1078 * 2290 79 0 0 chr6 75454480 75454772 -113824782 + HERV17 LTR ERV1 8335 8626 0 2678 55 0 0 chr6 75454772 75455098 -113824456 + LTR17 LTR ERV1 1 326 -454 180 77 0 0 chr6 75455941 75455967 -113823587 + (A)n Simple_repeat Simple_repeat 1 26 0 277 261 0 0 chr6 75456472 75456537 -113823017 - L2 LINE L2 -4 3268 3204 444 238 12 0 chr6 75456639 75456723 -113822831 + MLT1E1 LTR MaLR 5 89 -565 1152 227 60 11 chr6 75456724 75456993 -113822561 + AluJb SINE Alu 1 282 -30 1522 259 78 29 chr6 75457008 75457556 -113821998 + MLT1E1 LTR MaLR 80 654 0 228 157 45 112 chr6 75457795 75457884 -113821670 - HsTC2 DNA Tc2 0 1898 1816 1415 213 149 37 chr6 75457913 75458341 -113821213 + MLT1D LTR MaLR 28 503 -2 1975 135 0 38 chr6 75458885 75459204 -113820350 + AluSc SINE Alu 3 309 0 857 148 0 0 chr6 75459215 75459337 -113820217 + AluSq/x SINE Alu 4 125 -187 22 35 0 0 chr6 75460497 75460526 -113819028 + AT_rich Low_complexity Low_complexity 1 29 0 1098 278 141 29 chr6 75460694 75461176 -113818378 + MER90 LTR ERV1 69 604 -10 2540 169 11 26 chr6 75461287 75461754 -113817800 - MLT1C LTR MaLR 0 467 8 228 130 43 0 chr6 75461791 75461837 -113817717 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 21 36 0 0 chr6 75462300 75462328 -113817226 + AT_rich Low_complexity Low_complexity 1 28 0 487 360 24 5 chr6 75462524 75462735 -113816819 + MIR SINE MIR 14 228 -34 2566 103 19 5 chr6 75462873 75463243 -113816311 - THE1C LTR MaLR 0 375 1 9789 119 39 39 chr6 75463248 75464823 -113814731 - THE1C-int LTR MaLR -6 1574 1 2369 133 3 24 chr6 75464823 75465206 -113814348 - THE1C LTR MaLR 0 375 1 541 262 12 12 chr6 75465618 75465786 -113813768 + L1MB8 LINE L1 1667 1834 -4550 56 61 0 0 chr6 75465792 75465890 -113813664 + AT_rich Low_complexity Low_complexity 1 98 0 1079 186 96 48 chr6 75465956 75466332 -113813222 + L1MB8 LINE L1 2089 6410 -4 204 143 0 24 chr6 75466579 75466621 -113812933 + (TTTTTG)n Simple_repeat Simple_repeat 5 45 0 330 293 52 17 chr6 75467444 75467560 -113811994 - MIR SINE MIR -36 226 107 833 180 0 0 chr6 75468724 75468874 -113810680 + AluSg/x SINE Alu 163 312 0 2341 92 0 0 chr6 75469766 75470061 -113809493 + AluY SINE Alu 1 295 -16 1410 234 83 122 chr6 75470068 75471260 -113808294 - L1MD3 LINE L1 -1413 6582 5437 517 200 25 175 chr6 75471290 75471605 -113807949 - L1MC4 LINE L1 0 8042 7775 286 91 106 45 chr6 75471612 75471678 -113807876 + L1MA9 LINE L1 6082 6151 -161 1507 259 167 31 chr6 75471681 75472485 -113807069 - L1MC4 LINE L1 -490 7552 6640 330 231 15 0 chr6 75472586 75472651 -113806903 + Tigger2 DNA MER2_type 4 69 -2649 * 1018 139 0 12 chr6 75472638 75472804 -113806750 + Tigger2 DNA MER2_type 2270 2433 -285 2556 299 41 43 chr6 75472820 75473861 -113805693 + L1PA13 LINE L1 1 1478 -5309 4631 244 22 49 chr6 75473893 75474289 -113805265 + L1PA13 LINE L1 2747 3152 -3645 312 91 0 0 chr6 75474289 75474333 -113805221 + (CA)n Simple_repeat Simple_repeat 2 45 0 4631 244 22 49 chr6 75474333 75475454 -113804100 + L1PA13 LINE L1 3152 4224 -2573 1795 181 60 48 chr6 75475454 75475873 -113803681 + MSTB LTR MaLR 1 424 -2 8553 189 22 12 chr6 75475873 75477507 -113802047 + MSTB-int LTR MaLR 1 1651 0 521 194 0 0 chr6 75477507 75477600 -113801954 + MSTB LTR MaLR 1 93 -335 33 25 0 0 chr6 75527866 75527906 -113751648 + AT_rich Low_complexity Low_complexity 1 40 0 308 311 50 72 chr6 75528174 75528354 -113751200 + L1ME3A LINE L1 5965 6140 -30 281 342 56 7 chr6 75530682 75530828 -113748726 - MIR SINE MIR -54 208 57 254 185 31 0 chr6 75530890 75530955 -113748599 + (CATA)n Simple_repeat Simple_repeat 2 68 0 2171 168 63 0 chr6 75532963 75533362 -113746192 + MSTA LTR MaLR 5 428 0 473 156 128 0 chr6 75533480 75533589 -113745965 + Charlie5 DNA MER1_type 2 124 -2488 914 226 151 3 chr6 75533591 75533928 -113745626 + Charlie5 DNA MER1_type 2238 2624 0 214 421 59 0 chr6 75535423 75535644 -113743910 - MIR SINE MIR -22 240 7 25 65 0 0 chr6 75537004 75537050 -113742504 + AT_rich Low_complexity Low_complexity 1 46 0 30 59 0 0 chr6 75538192 75538243 -113741311 + AT_rich Low_complexity Low_complexity 1 51 0 25 51 0 0 chr6 75538726 75538765 -113740789 + AT_rich Low_complexity Low_complexity 1 39 0 1370 156 0 0 chr6 75540368 75540580 -113738974 + AluSg/x SINE Alu 97 308 -4 2144 104 10 0 chr6 75541071 75541359 -113738195 - AluSc SINE Alu -18 291 1 484 295 82 30 chr6 75541545 75541813 -113737741 + L2 LINE L2 1859 2140 -1174 1625 172 37 42 chr6 75542054 75542431 -113737123 + THE1C LTR MaLR 1 375 0 9361 133 29 32 chr6 75542431 75543907 -113735647 + THE1C-int LTR MaLR 1 1480 -100 1677 158 45 20 chr6 75543907 75544199 -113735355 + AluSx SINE Alu 1 299 -13 9361 133 29 32 chr6 75544199 75544221 -113735333 + THE1C-int LTR MaLR 1480 1501 -79 327 25 0 0 chr6 75544221 75544261 -113735293 + (CA)n Simple_repeat Simple_repeat 2 41 0 9361 133 29 32 chr6 75544261 75544346 -113735208 + THE1C-int LTR MaLR 1501 1580 0 1861 136 37 40 chr6 75544346 75544722 -113734832 + THE1C LTR MaLR 1 375 0 213 328 0 0 chr6 75544782 75544849 -113734705 + L2 LINE L2 3246 3312 -1 281 236 194 42 chr6 75545054 75545198 -113734356 + MIR SINE MIR 95 260 -2 1807 141 0 53 chr6 75545391 75545725 -113733829 + AluSx SINE Alu 2 319 0 1229 237 94 15 chr6 75545912 75546241 -113733313 + LTR18A LTR ERVL 1 355 -2 23 86 0 0 chr6 75546249 75546307 -113733247 + AT_rich Low_complexity Low_complexity 1 58 0 5942 233 46 55 chr6 75546991 75552185 -113727369 + L1MB1 LINE L1 2404 7516 -71 22 56 0 0 chr6 75553122 75553158 -113726396 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr6 75553409 75553437 -113726117 + AT_rich Low_complexity Low_complexity 1 28 0 198 71 0 0 chr6 75554856 75554884 -113724670 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 221 320 0 0 chr6 75554903 75554953 -113724601 - MIR SINE MIR -99 109 60 240 349 100 21 chr6 75555023 75555304 -113724250 + L3 LINE CR1 1216 1518 -59 21 0 0 0 chr6 75556308 75556329 -113723225 + AT_rich Low_complexity Low_complexity 1 21 0 29 70 0 0 chr6 75556808 75556865 -113722689 + AT_rich Low_complexity Low_complexity 1 57 0 701 259 16 21 chr6 75557259 75557448 -113722106 + MER5A DNA MER1_type 1 188 -1 404 288 100 19 chr6 75557457 75557617 -113721937 + MER5B DNA MER1_type 6 178 0 280 327 111 13 chr6 75560666 75560819 -113718735 - MIR SINE MIR -58 204 37 505 251 22 69 chr6 75560823 75561054 -113718500 - L1ME LINE L1 -3707 2373 2154 551 210 48 139 chr6 75561651 75561903 -113717651 + LTR68 LTR ERV1 512 740 0 209 57 29 0 chr6 75561913 75561948 -113717606 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 329 229 46 37 chr6 75561952 75562061 -113717493 - L1ME LINE L1 -4090 2171 2062 523 277 47 47 chr6 75562205 75562523 -113717031 - L1ME LINE L1 -4490 1771 1454 1046 195 9 9 chr6 75562541 75562751 -113716803 - AluJb SINE Alu -18 294 85 652 265 78 48 chr6 75562754 75563364 -113716190 - L1ME LINE L1 -4683 1397 762 1294 297 43 57 chr6 75563390 75564128 -113715426 - L1ME LINE L1 -5285 785 58 192 391 9 18 chr6 75564704 75564814 -113714740 - L2 LINE L2 -221 3051 2943 1820 164 4 0 chr6 75565804 75566085 -113713469 + AluSx SINE Alu 1 282 -30 180 0 0 0 chr6 75568603 75568623 -113710931 + (CAG)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr6 75568698 75568719 -113710835 + AT_rich Low_complexity Low_complexity 1 21 0 289 307 8 39 chr6 75568949 75569076 -113710478 + L2 LINE L2 2157 2279 -1035 22 88 0 0 chr6 75569437 75569494 -113710060 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr6 75569776 75569800 -113709754 + AT_rich Low_complexity Low_complexity 1 24 0 229 380 30 11 chr6 75570028 75570157 -113709397 - MIR SINE MIR -72 136 5 515 56 0 14 chr6 75570181 75570253 -113709301 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 193 0 61 30 chr6 75570927 75570960 -113708594 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 358 323 63 13 chr6 75571206 75571364 -113708190 + MLT1I LTR MaLR 40 205 -204 198 365 19 9 chr6 75572392 75572499 -113707055 - L2 LINE L2 -380 2934 2827 470 345 25 5 chr6 75572880 75573083 -113706471 - L2 LINE L2 -496 2818 2612 36 62 0 0 chr6 75573193 75573257 -113706297 + AT_rich Low_complexity Low_complexity 1 64 0 900 186 33 22 chr6 75573943 75574114 -113705440 + AluJb SINE Alu 120 295 -17 2170 53 0 50 chr6 75574114 75574415 -113705139 + AluY SINE Alu 21 306 -5 900 186 33 22 chr6 75574415 75574426 -113705128 + AluJb SINE Alu 295 304 -8 222 318 183 8 chr6 75574563 75574689 -113704865 + L2 LINE L2 363 510 -2804 216 0 0 0 chr6 75574699 75574723 -113704831 + (A)n Simple_repeat Simple_repeat 1 24 0 315 287 191 0 chr6 75574761 75574918 -113704636 - MER5A DNA MER1_type 0 189 3 592 262 219 4 chr6 75576599 75576855 -113702699 - MER110 LTR ERV1 -180 311 1 279 71 0 0 chr6 75577984 75578026 -113701528 + (CA)n Simple_repeat Simple_repeat 2 43 0 1547 164 26 0 chr6 75578153 75578422 -113701132 + AluJb SINE Alu 18 293 -19 1372 243 83 11 chr6 75579829 75580203 -113699351 + LTR52 LTR ERVL 1 401 -20 222 341 47 0 chr6 75580215 75580300 -113699254 - MER5A DNA MER1_type 0 189 101 228 204 145 92 chr6 75580765 75580917 -113698637 + MER5A DNA MER1_type 24 183 -6 5003 201 21 10 chr6 75582494 75584555 -113694999 + L1PA16 LINE L1 4069 6153 -13 2226 111 45 0 chr6 75584691 75585050 -113694504 + L1PA13 LINE L1 5789 6163 0 27 62 0 0 chr6 75585076 75585124 -113694430 + AT_rich Low_complexity Low_complexity 1 48 0 22 70 0 0 chr6 75585234 75585277 -113694277 + AT_rich Low_complexity Low_complexity 1 43 0 523 171 62 8 chr6 75585281 75585410 -113694144 - L1MA9 LINE L1 -32 6280 6145 11962 187 40 14 chr6 75585500 75588992 -113690562 + L1PA14 LINE L1 2672 6149 -12 27 49 0 0 chr6 75589772 75589813 -113689741 + AT_rich Low_complexity Low_complexity 1 41 0 1615 201 14 0 chr6 75590926 75591220 -113688334 - AluJb SINE Alu -14 298 1 255 335 73 83 chr6 75591234 75592008 -113687546 - L2 LINE L2 -5 3267 2463 22 35 0 0 chr6 75592649 75592678 -113686876 + AT_rich Low_complexity Low_complexity 1 29 0 1038 260 83 18 chr6 75592702 75593041 -113686513 + L1MDa LINE L1 35 395 -6145 5110 131 9 5 chr6 75593043 75593840 -113685714 + L1PA15 LINE L1 5360 6159 -6 3214 215 98 66 chr6 75593852 75594732 -113684822 + L1MDa LINE L1 780 1630 -4910 7530 31 0 0 chr6 75594732 75595744 -113683810 + L1PA4 LINE L1 5144 6155 0 3214 215 98 66 chr6 75595744 75595868 -113683686 + L1MDa LINE L1 1630 1749 -4791 435 83 0 0 chr6 75595868 75595928 -113683626 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 3214 215 98 66 chr6 75595928 75596277 -113683277 + L1MDa LINE L1 1749 2112 -4428 280 197 14 42 chr6 75596262 75596333 -113683221 - L1MA9 LINE L1 -205 6107 6039 * 335 263 40 0 chr6 75596342 75596441 -113683113 + L1MA9 LINE L1 6171 6273 -39 503 229 85 7 chr6 75596485 75596638 -113682916 + L1MDa LINE L1 2146 2310 -4230 281 167 115 0 chr6 75596636 75596714 -113682840 + L1MD2 LINE L1 6047 6133 -226 * 369 0 0 0 chr6 75596718 75596759 -113682795 + (CA)n Simple_repeat Simple_repeat 2 42 0 418 271 57 0 chr6 75596761 75596901 -113682653 + L1MD3 LINE L1 7835 7982 -13 415 232 61 55 chr6 75597026 75597190 -113682364 + L1MDa LINE L1 1798 1962 -4578 840 332 45 30 chr6 75597196 75597663 -113681891 + L1ME2 LINE L1 5561 6034 -130 1946 111 14 34 chr6 75599008 75599305 -113680249 - AluSx SINE Alu -17 295 5 22 35 0 0 chr6 75599452 75599481 -113680073 + AT_rich Low_complexity Low_complexity 1 29 0 329 346 72 34 chr6 75601135 75601456 -113678098 - L1 LINE L1 -3089 3057 2725 25 75 0 0 chr6 75601546 75601599 -113677955 + AT_rich Low_complexity Low_complexity 1 53 0 2059 174 11 8 chr6 75601951 75602325 -113677229 - THE1C LTR MaLR 0 375 1 9344 134 40 9 chr6 75602325 75603807 -113675747 - THE1C-int LTR MaLR 0 1580 53 1350 142 36 0 chr6 75603813 75604038 -113675516 - THE1C-int LTR MaLR -1346 234 2 2179 122 32 16 chr6 75604039 75604408 -113675146 - THE1C LTR MaLR 0 375 1 246 209 23 35 chr6 75604440 75604526 -113675028 + T-rich Low_complexity Low_complexity 1 85 0 21 36 0 0 chr6 75605009 75605037 -113674517 + AT_rich Low_complexity Low_complexity 1 28 0 645 323 10 0 chr6 75605495 75605693 -113673861 - LTR16A LTR ERVL -27 423 224 22 56 0 0 chr6 75605994 75606030 -113673524 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr6 75606245 75606273 -113673281 + AT_rich Low_complexity Low_complexity 1 28 0 1603 183 36 44 chr6 75606530 75606919 -113672635 + MLT1B LTR MaLR 1 386 -4 47 73 0 0 chr6 75606992 75607088 -113672466 + AT_rich Low_complexity Low_complexity 1 96 0 384 221 35 12 chr6 75607249 75607335 -113672219 + MLT1E LTR MaLR 36 123 -470 418 220 113 33 chr6 75607363 75607602 -113671952 + MLT1E LTR MaLR 207 546 -47 459 0 0 0 chr6 75607602 75607653 -113671901 + (TG)n Simple_repeat Simple_repeat 2 52 0 418 220 113 33 chr6 75607653 75607700 -113671854 + MLT1E LTR MaLR 546 588 -5 245 313 0 0 chr6 75608544 75608627 -113670927 + GA-rich Low_complexity Low_complexity 3 144 0 27 49 0 0 chr6 75608747 75608788 -113670766 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr6 75609156 75609184 -113670370 + AT_rich Low_complexity Low_complexity 1 28 0 437 344 126 38 chr6 75610655 75611338 -113668216 + L2 LINE L2 190 932 -2382 256 378 0 15 chr6 75613290 75613425 -113666129 - HAL1 LINE L1 -1584 923 791 190 281 207 25 chr6 75614574 75614695 -113664859 - MIR SINE MIR -42 220 78 187 399 75 0 chr6 75614976 75615109 -113664445 + L2 LINE L2 2247 2389 -925 261 293 0 0 chr6 75615520 75615578 -113663976 + L2 LINE L2 2994 3051 -221 330 309 166 13 chr6 75616319 75616506 -113663048 + MIR SINE MIR 4 202 -11 189 0 0 0 chr6 75616838 75616859 -113662695 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 267 54 0 0 chr6 75617146 75617183 -113662371 + (TG)n Simple_repeat Simple_repeat 2 38 0 1223 250 30 3 chr6 75617888 75618188 -113661366 + MER58B DNA MER1_type 26 333 -8 472 268 106 23 chr6 75618408 75618673 -113660881 - L1MCa LINE L1 -3359 3067 2781 1804 208 78 9 chr6 75618867 75619304 -113660250 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr6 75619527 75619548 -113660006 + AT_rich Low_complexity Low_complexity 1 21 0 2783 240 78 29 chr6 75619870 75621741 -113657813 + L1MB7 LINE L1 4015 6184 0 270 243 0 0 chr6 75621791 75621861 -113657693 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 301 330 105 14 chr6 75621917 75622126 -113657428 - L1MCa LINE L1 -5091 1335 1108 1509 210 25 33 chr6 75622561 75622928 -113656626 - MLT1A1 LTR MaLR -1 364 1 285 209 0 0 chr6 75624418 75624485 -113655069 + (CA)n Simple_repeat Simple_repeat 2 68 0 22 0 0 0 chr6 75624896 75624918 -113654636 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr6 75626090 75626125 -113653429 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr6 75626804 75626837 -113652717 + AT_rich Low_complexity Low_complexity 1 33 0 1423 191 11 31 chr6 75630169 75630519 -113649035 - L1MA9 LINE L1 -9 6303 5961 22 70 0 0 chr6 75630702 75630745 -113648809 + AT_rich Low_complexity Low_complexity 1 43 0 210 326 89 15 chr6 75630853 75630988 -113648566 + MIR SINE MIR 47 191 -71 532 321 65 62 chr6 75631168 75631813 -113647741 - L1ME4a LINE L1 -179 5942 5296 259 274 14 82 chr6 75631995 75632173 -113647381 - L1MC/D LINE L1 -537 5584 5505 806 241 54 83 chr6 75632286 75632622 -113646932 + MER83C LTR ERV1 48 373 0 24469 35 2 0 chr6 75632693 75636447 -113643107 + L1PA4 LINE L1 2382 6144 -11 28 0 0 0 chr6 75636447 75636475 -113643079 + AT_rich Low_complexity Low_complexity 1 28 0 1695 189 0 7 chr6 75637022 75637329 -113642225 - AluJb SINE Alu -7 305 1 22 0 0 0 chr6 75637375 75637397 -113642157 + AT_rich Low_complexity Low_complexity 1 22 0 315 277 99 43 chr6 75637640 75637922 -113641632 - L1MC/D LINE L1 -1481 4665 4368 1330 193 114 38 chr6 75638384 75638752 -113640802 - MSTD LTR MaLR 0 396 1 35 71 0 0 chr6 75638876 75638946 -113640608 + AT_rich Low_complexity Low_complexity 1 70 0 245 254 22 90 chr6 75638997 75639131 -113640423 + L1ME LINE L1 5558 5682 -439 184 305 17 0 chr6 75639666 75639725 -113639829 - MIR3 SINE MIR -24 184 125 1411 216 58 85 chr6 75642742 75643260 -113636294 + MLT1D LTR MaLR 2 505 0 28 29 0 0 chr6 75643380 75643415 -113636139 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 75643795 75643817 -113635737 + AT_rich Low_complexity Low_complexity 1 22 0 332 181 49 21 chr6 75644451 75644595 -113634959 + (TA)n Simple_repeat Simple_repeat 2 149 0 374 270 0 43 chr6 75644645 75644760 -113634794 + ORSL DNA AcHobo 166 275 0 315 0 0 0 chr6 75646532 75646567 -113632987 + (TG)n Simple_repeat Simple_repeat 2 36 0 499 209 26 45 chr6 75646852 75647017 -113632537 + MSTC LTR MaLR 1 162 -212 1151 148 42 0 chr6 75647025 75647241 -113632313 - L1MA4A LINE L1 -9 6294 6070 808 149 50 0 chr6 75647244 75647385 -113632169 + L1MA4A LINE L1 5825 5972 -331 579 319 16 0 chr6 75647400 75647585 -113631969 - MIR SINE MIR -73 189 2 362 255 70 80 chr6 75647842 75648042 -113631512 - L2 LINE L2 0 3313 3116 32 86 0 0 chr6 75648633 75648714 -113630840 + AT_rich Low_complexity Low_complexity 1 81 0 785 293 48 41 chr6 75650746 75651060 -113628494 - L2 LINE L2 -3 3310 2995 181 278 74 99 chr6 75651109 75651271 -113628283 - L2 LINE L2 -401 2913 2756 238 313 92 76 chr6 75651342 75651798 -113627756 - L2 LINE L2 -44 3269 2776 4589 165 92 10 chr6 75651804 75652862 -113626692 - Tigger3b DNA MER2_type -1 1230 29 682 333 64 40 chr6 75652866 75653368 -113626186 - L2 LINE L2 -549 2765 2252 290 339 143 39 chr6 75654275 75654835 -113624719 - L2 LINE L2 -709 2605 1988 1859 157 3 0 chr6 75656075 75656361 -113623193 + AluSx SINE Alu 7 293 -19 23 0 0 0 chr6 75656426 75656449 -113623105 + AT_rich Low_complexity Low_complexity 1 23 0 328 359 43 31 chr6 75657104 75657455 -113622099 + L1PA15-16 LINE L1 1192 1546 -5303 335 309 0 0 chr6 75657473 75657570 -113621984 + L1PA15-16 LINE L1 1473 1569 -5280 * 3819 248 52 27 chr6 75657551 75658942 -113620612 + L1PB4 LINE L1 1337 2850 -3999 337 234 42 0 chr6 75659198 75659365 -113620189 + (TA)n Simple_repeat Simple_repeat 2 175 0 11084 220 41 9 chr6 75659367 75663180 -113616374 + L1PB4 LINE L1 2918 6854 -5 757 326 101 14 chr6 75663781 75664279 -113615275 - L2 LINE L2 0 3313 2774 22 0 0 0 chr6 75665004 75665026 -113614528 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 75665064 75665088 -113614466 + AT_rich Low_complexity Low_complexity 1 24 0 237 33 0 0 chr6 75665166 75665196 -113614358 + (CA)n Simple_repeat Simple_repeat 2 31 0 300 247 34 22 chr6 75665235 75665324 -113614230 - LTR33A LTR ERVL 0 523 434 232 356 94 7 chr6 75665361 75665510 -113614044 - LTR50 LTR ERVL -164 631 470 * 272 271 49 83 chr6 75665501 75665645 -113613909 - LTR50 LTR ERVL -639 156 18 790 249 5 28 chr6 75666713 75666926 -113612628 - MER3 DNA MER1_type -1 208 1 24 32 0 0 chr6 75667121 75667152 -113612402 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr6 75667186 75667217 -113612337 + AT_rich Low_complexity Low_complexity 1 31 0 12568 167 32 13 chr6 75667603 75668117 -113611437 + Tigger1 DNA MER2_type 1 504 -1914 2466 68 3 0 chr6 75668117 75668427 -113611127 + AluY SINE Alu 1 311 0 12568 167 32 13 chr6 75668427 75670270 -113609284 + Tigger1 DNA MER2_type 504 2403 -15 24 0 0 0 chr6 75670440 75670464 -113609090 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr6 75670899 75670931 -113608623 + AT_rich Low_complexity Low_complexity 1 32 0 26 74 0 0 chr6 75671011 75671065 -113608489 + AT_rich Low_complexity Low_complexity 1 54 0 262 352 44 44 chr6 75671790 75671972 -113607582 - L2 LINE L2 -213 3100 2919 398 373 73 27 chr6 75672025 75672395 -113607159 - L2 LINE L2 -498 2816 2430 261 339 41 64 chr6 75672718 75672889 -113606665 + MLT1H LTR MaLR 153 319 -230 2085 121 41 39 chr6 75673902 75674265 -113605289 - THE1B LTR MaLR 0 364 1 235 294 0 71 chr6 75674498 75674583 -113604971 - L2 LINE L2 0 3272 3194 1748 150 51 0 chr6 75674601 75674875 -113604679 + THE1B LTR MaLR 77 364 0 10229 117 17 28 chr6 75674875 75676472 -113603082 + THE1B-int LTR MaLR 1 1579 -1 2348 108 37 0 chr6 75676473 75676824 -113602730 + THE1B LTR MaLR 1 364 0 388 265 29 15 chr6 75677249 75677385 -113602169 + L1MB7 LINE L1 9 146 -6396 1385 136 5 0 chr6 75677406 75677640 -113601914 + AluSg/x SINE Alu 83 317 0 365 353 82 33 chr6 75677668 75678034 -113601520 + L1MB7 LINE L1 191 574 -5968 1198 208 37 4 chr6 75678035 75678276 -113601278 + MER70A LTR ERVL 224 472 0 2977 229 52 124 chr6 75678295 75679672 -113599882 + L1MB7 LINE L1 3126 4310 -2334 2260 102 6 6 chr6 75679672 75679985 -113599569 + AluSq SINE Alu 1 313 0 2977 229 52 124 chr6 75679985 75680652 -113598902 + L1MB7 LINE L1 4310 5023 -1621 1898 238 47 15 chr6 75680650 75681180 -113598374 + L1MB7 LINE L1 5768 6314 -364 * 1278 120 21 0 chr6 75681191 75681382 -113598172 + AluSp SINE Alu 1 195 -118 406 224 192 20 chr6 75681406 75681602 -113597952 + L1MB7 LINE L1 6309 6542 -122 2991 206 34 27 chr6 75681606 75682336 -113597218 + L1MB4 LINE L1 5440 6174 -6 1324 219 166 109 chr6 75682389 75683276 -113596278 + L1M4 LINE L1 4081 5017 -1129 348 329 32 19 chr6 75683326 75683481 -113596073 - L2 LINE L2 -1259 2055 1899 223 388 107 18 chr6 75683908 75684302 -113595252 - L2 LINE L2 -1937 1377 949 694 88 10 0 chr6 75685187 75685289 -113594265 + L1PA13 LINE L1 6042 6144 -19 595 159 13 0 chr6 75685290 75685441 -113594113 + (TA)n Simple_repeat Simple_repeat 1 153 0 22 0 0 0 chr6 75685540 75685562 -113593992 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 75685905 75685926 -113593628 + AT_rich Low_complexity Low_complexity 1 21 0 876 122 112 5 chr6 75686763 75686951 -113592603 - L1MC3 LINE L1 -26 7759 7552 543 143 0 33 chr6 75686969 75687060 -113592494 - MLT1C LTR MaLR -379 88 1 536 161 189 21 chr6 75687061 75687204 -113592350 - L1MB8 LINE L1 -186 5992 5826 1562 192 62 39 chr6 75687218 75687655 -113591899 - L1M4b LINE L1 -5183 1676 1230 1050 350 35 20 chr6 75688207 75688698 -113590856 - L1M4b LINE L1 -5923 936 439 195 393 89 27 chr6 75688819 75688931 -113590623 - L2 LINE L2 -20 3252 3134 193 373 49 0 chr6 75689805 75689907 -113589647 + MIR SINE MIR 37 143 -65 23 68 0 0 chr6 75690284 75690328 -113589226 + AT_rich Low_complexity Low_complexity 1 44 0 1978 132 10 3 chr6 75690568 75690864 -113588690 + AluSg SINE Alu 1 298 -12 256 91 0 0 chr6 75691774 75691807 -113587747 + Alu SINE Alu 248 280 -22 180 0 0 0 chr6 75691807 75691827 -113587727 + (CAAT)n Simple_repeat Simple_repeat 4 23 0 248 267 69 10 chr6 75691867 75691968 -113587586 + MIR SINE MIR 92 198 -64 31 26 0 0 chr6 75692483 75692521 -113587033 + AT_rich Low_complexity Low_complexity 1 38 0 250 346 87 0 chr6 75692662 75692766 -113586788 + MIR SINE MIR 31 143 -119 2374 88 0 0 chr6 75694211 75694506 -113585048 - AluY SINE Alu -16 295 1 4002 133 6 14 chr6 75694508 75695171 -113584383 - L1PA16 LINE L1 -2 6164 5507 27 62 0 0 chr6 75695770 75695818 -113583736 + AT_rich Low_complexity Low_complexity 1 48 0 3202 224 47 10 chr6 75696358 75697294 -113582260 - L1MB7 LINE L1 0 6184 5215 649 211 23 8 chr6 75697445 75697573 -113581981 - Tigger1 DNA MER2_type 0 2418 2289 842 281 66 31 chr6 75697590 75697939 -113581615 - L1M4b LINE L1 -6488 371 11 1087 168 20 25 chr6 75697944 75698146 -113581408 + AluJo SINE Alu 85 285 -27 2086 68 0 34 chr6 75698741 75699060 -113580494 - AluY SINE Alu 0 309 1 22 80 0 0 chr6 75700110 75700160 -113579394 + AT_rich Low_complexity Low_complexity 1 50 0 422 306 38 0 chr6 75700378 75700535 -113579019 - MIR SINE MIR -3 259 97 673 336 124 9 chr6 75701407 75701833 -113577721 + L2 LINE L2 2838 3312 -1 988 296 112 48 chr6 75702934 75703973 -113575581 + Charlie7 DNA MER1_type 4 1108 -1504 320 368 22 39 chr6 75704182 75704413 -113575141 - L2 LINE L2 -675 2639 2413 209 208 0 0 chr6 75705246 75705294 -113574260 + A-rich Low_complexity Low_complexity 1 48 0 27 29 0 0 chr6 75705488 75705522 -113574032 + AT_rich Low_complexity Low_complexity 1 34 0 24 67 0 0 chr6 75705618 75705663 -113573891 + AT_rich Low_complexity Low_complexity 1 45 0 1618 253 86 39 chr6 75706623 75707445 -113572109 + L1MDb LINE L1 786 1606 -4800 3998 162 28 0 chr6 75709211 75710501 -113569053 + L1MA3 LINE L1 4584 5908 -397 7788 17 0 0 chr6 75710507 75711987 -113567567 - L1PA2 LINE L1 0 6155 4676 2062 182 15 0 chr6 75711987 75712388 -113567166 + L1MA3 LINE L1 5897 6304 -1 313 232 42 42 chr6 75713409 75713504 -113566050 + MLT1I LTR MaLR 113 207 -202 259 254 133 38 chr6 75714045 75714191 -113565363 + MIR3 SINE MIR 3 167 -41 2170 138 19 21 chr6 75714204 75714580 -113564974 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr6 75714870 75714891 -113564663 + AT_rich Low_complexity Low_complexity 1 21 0 231 143 61 0 chr6 75715478 75715527 -113564027 - LTR66 LTR ERVL -165 445 394 241 83 62 0 chr6 75716844 75716892 -113562662 + (ATATG)n Simple_repeat Simple_repeat 3 53 0 1758 179 0 0 chr6 75717297 75717588 -113561966 + AluJb SINE Alu 1 291 -21 333 0 0 0 chr6 75717942 75717979 -113561575 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr6 75717979 75718000 -113561554 + AT_rich Low_complexity Low_complexity 1 21 0 782 243 29 0 chr6 75718005 75718178 -113561376 + FAM SINE Alu 1 49 0 25 31 0 0 chr6 75719021 75719053 -113560501 + AT_rich Low_complexity Low_complexity 1 32 0 30 45 0 0 chr6 75719136 75719180 -113560374 + AT_rich Low_complexity Low_complexity 1 44 0 1043 169 73 23 chr6 75719283 75719502 -113560052 + L1PA16 LINE L1 5935 6164 -2 330 256 112 16 chr6 75720034 75720159 -113559395 + MIR SINE MIR 64 200 -62 216 345 59 17 chr6 75720590 75720709 -113558845 + L2 LINE L2 3179 3302 -11 318 67 0 0 chr6 75720710 75720755 -113558799 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 22 0 0 0 chr6 75720755 75720777 -113558777 + AT_rich Low_complexity Low_complexity 1 22 0 957 88 0 0 chr6 75720799 75720935 -113558619 - L1P LINE L1 -2348 3798 3663 294 235 0 0 chr6 75721126 75721228 -113558326 + (TA)n Simple_repeat Simple_repeat 2 103 0 189 0 0 0 chr6 75721228 75721249 -113558305 + (GA)n Simple_repeat Simple_repeat 2 22 0 207 344 16 0 chr6 75721738 75721799 -113557755 + MER5A DNA MER1_type 77 138 -51 231 36 0 0 chr6 75722004 75722032 -113557522 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 228 35 0 0 chr6 75722193 75722222 -113557332 + (CA)n Simple_repeat Simple_repeat 2 30 0 24 53 0 0 chr6 75723162 75723200 -113556354 + AT_rich Low_complexity Low_complexity 1 38 0 258 266 55 46 chr6 75723290 75723399 -113556155 - L3 LINE CR1 -412 1165 1056 180 77 0 0 chr6 75723490 75723516 -113556038 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1153 220 42 29 chr6 75723822 75724135 -113555419 - MLT1A1 LTR MaLR 0 365 49 2243 238 46 12 chr6 75724162 75724663 -113554891 - MLT1A1-int LTR MaLR 0 1735 1218 2309 241 56 10 chr6 75724732 75725326 -113554228 - MLT1A1-int LTR MaLR -1110 625 5 2225 187 90 39 chr6 75725334 75725367 -113554187 - MLT2B1 LTR ERVL -8 512 482 225 0 0 0 chr6 75725367 75725392 -113554162 + (TA)n Simple_repeat Simple_repeat 2 26 0 2225 187 90 39 chr6 75725392 75725814 -113553740 - MLT2B1 LTR ERVL -38 482 28 1901 166 0 3 chr6 75725814 75726121 -113553433 - AluSx SINE Alu -5 307 2 2225 187 90 39 chr6 75726121 75726151 -113553403 - MLT2B1 LTR ERVL -492 28 1 1132 290 44 12 chr6 75726169 75726543 -113553011 - ERVL LTR ERVL -5161 493 113 283 261 17 35 chr6 75726742 75726857 -113552697 - ERVL LTR ERVL -5650 114 2 1408 191 70 62 chr6 75727187 75727528 -113552026 - Tigger7 DNA MER2_type -2143 344 1 9227 195 43 6 chr6 75727530 75727615 -113551939 + ERVL-B1 LTR ERVL 1885 1965 -3799 3409 87 106 4 chr6 75727615 75728155 -113551399 + LTR61 LTR ERV1 1 595 0 9227 195 43 6 chr6 75728155 75729148 -113550406 + ERVL-B1 LTR ERVL 1965 3055 -2709 234 0 0 0 chr6 75729148 75729174 -113550380 + (GA)n Simple_repeat Simple_repeat 1 26 0 9227 195 43 6 chr6 75729174 75729831 -113549723 + ERVL-B1 LTR ERVL 3055 3686 -2078 693 174 87 52 chr6 75729824 75729996 -113549558 + ERVL-B1 LTR ERVL 3822 3999 -1765 * 5551 196 59 19 chr6 75729984 75730215 -113549339 + ERVL-B1 LTR ERVL 4291 4511 -1253 239 53 0 26 chr6 75730215 75730253 -113549301 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 5551 196 59 19 chr6 75730253 75731229 -113548325 + ERVL-B1 LTR ERVL 4511 5546 -218 1247 199 21 101 chr6 75731242 75731391 -113548163 + MLT1A1 LTR MaLR 14 173 -192 2139 114 7 0 chr6 75731391 75731681 -113547873 + AluSc SINE Alu 1 292 -17 1247 199 21 101 chr6 75731681 75731907 -113547647 + MLT1A1 LTR MaLR 173 359 -6 1036 191 47 5 chr6 75731911 75732126 -113547428 + ERVL-B1 LTR ERVL 5541 5764 0 261 214 43 29 chr6 75732126 75732196 -113547358 + MLT2B1 LTR ERVL 14 84 -330 742 220 61 79 chr6 75732205 75732255 -113547299 + MLT2B1 LTR ERVL 209 258 -262 362 21 0 21 chr6 75732255 75732303 -113547251 + (TTTTC)n Simple_repeat Simple_repeat 4 50 0 742 220 61 79 chr6 75732303 75732529 -113547025 + MLT2B1 LTR ERVL 258 480 -40 202 108 68 0 chr6 75732542 75732616 -113546938 + (TA)n Simple_repeat Simple_repeat 1 79 0 352 39 78 0 chr6 75732633 75732684 -113546870 + MLT2B1 LTR ERVL 466 520 0 1759 157 10 10 chr6 75733145 75733439 -113546115 + AluSx SINE Alu 1 294 -18 533 320 60 42 chr6 75733462 75733793 -113545761 + L2 LINE L2 2914 3250 -63 206 225 0 0 chr6 75733873 75733913 -113545641 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 2093 121 0 55 chr6 75734974 75735304 -113544250 + AluSx SINE Alu 1 312 0 467 130 14 0 chr6 75736155 75736241 -113543313 - L1M4 LINE L1 -393 5785 5698 1309 195 29 32 chr6 75736247 75736591 -113542963 + L1MA7 LINE L1 5923 6265 -26 32 0 0 0 chr6 75737506 75737538 -113542016 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr6 75737723 75737759 -113541795 + AT_rich Low_complexity Low_complexity 1 36 0 196 313 0 0 chr6 75740604 75740652 -113538902 + L2 LINE L2 2995 3042 -230 316 239 89 35 chr6 75743106 75743365 -113536189 + L1MEc LINE L1 2023 2295 -4101 313 311 102 78 chr6 75744135 75744623 -113534931 + L1MEc LINE L1 2854 3353 -2862 288 316 52 28 chr6 75745120 75745332 -113534222 + L1MEc LINE L1 4092 4308 -1907 235 282 28 42 chr6 75745463 75745605 -113533949 + L1M2 LINE L1 5423 5562 -729 410 263 173 0 chr6 75747879 75748035 -113531519 + MER5A DNA MER1_type 7 189 0 251 273 11 23 chr6 75748206 75748294 -113531260 + GA-rich Low_complexity Low_complexity 1 87 0 583 298 53 0 chr6 75749102 75749290 -113530264 - MARNA DNA Mariner -16 570 373 206 218 18 18 chr6 75750656 75750688 -113528866 + (TA)n Simple_repeat Simple_repeat 1 35 -20 462 117 0 13 chr6 75750688 75750765 -113528789 - MADE1 DNA Mariner 0 80 5 206 218 18 18 chr6 75750765 75750787 -113528767 + (TA)n Simple_repeat Simple_repeat 34 55 0 23 68 0 0 chr6 75750859 75750903 -113528651 + AT_rich Low_complexity Low_complexity 1 44 0 27 73 0 0 chr6 75751327 75751382 -113528172 + AT_rich Low_complexity Low_complexity 1 55 0 27 0 0 0 chr6 75752962 75752989 -113526565 + AT_rich Low_complexity Low_complexity 1 27 0 311 323 101 37 chr6 75753013 75753341 -113526213 - L1MC4a LINE L1 -1903 5905 5557 656 256 126 63 chr6 75753964 75754600 -113524954 - HAL1 LINE L1 -128 2379 1704 339 329 58 50 chr6 75754738 75754978 -113524576 - HAL1 LINE L1 -1557 950 709 261 298 133 13 chr6 75755195 75755346 -113524208 - HAL1 LINE L1 -2117 390 222 1110 73 0 0 chr6 75755452 75755588 -113523966 + AluY SINE Alu 1 136 -175 183 42 0 0 chr6 75757240 75757264 -113522290 + (ATG)n Simple_repeat Simple_repeat 2 25 0 1456 76 0 0 chr6 75760916 75761101 -113518453 + AluY SINE Alu 127 311 0 665 322 121 39 chr6 75761107 75761768 -113517786 - L1MEc LINE L1 -5627 769 55 1883 120 11 18 chr6 75762204 75762515 -113517039 - AluSx SINE Alu 0 309 1 212 309 74 0 chr6 75763874 75763955 -113515599 + MIR SINE MIR 48 134 -128 * 515 323 107 18 chr6 75763946 75764283 -113515271 + L2 LINE L2 2398 2764 -550 2127 114 0 0 chr6 75764300 75764581 -113514973 + AluSx SINE Alu 1 281 -31 201 39 0 0 chr6 75764583 75764609 -113514945 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 442 186 18 88 chr6 75764632 75764745 -113514809 + MLT1F LTR MaLR 2 106 -436 610 262 124 68 chr6 75764780 75765268 -113514286 + L2 LINE L2 2771 3309 -4 360 47 0 0 chr6 75765341 75765384 -113514170 - U2 snRNA snRNA -145 43 1 29 0 0 0 chr6 75765799 75765828 -113513726 + AT_rich Low_complexity Low_complexity 1 29 0 667 186 38 38 chr6 75766062 75766245 -113513309 + MER53 DNA DNA 4 186 -3 488 200 127 67 chr6 75766611 75766776 -113512778 + MER69A DNA AcHobo 1 175 -2 2469 250 35 92 chr6 75767411 75768697 -113510857 + L2 LINE L2 2116 3312 -1 432 0 0 0 chr6 75768800 75768848 -113510706 + (TG)n Simple_repeat Simple_repeat 2 49 0 2013 255 64 45 chr6 75769529 75770727 -113508827 - L1ME3A LINE L1 -10 6160 4927 3725 58 2 0 chr6 75770727 75771195 -113508359 - L1PA7 LINE L1 -8 6146 5678 2013 255 64 45 chr6 75771195 75771229 -113508325 - L1ME3A LINE L1 -1243 4927 4895 24 53 0 0 chr6 75771251 75771289 -113508265 + AT_rich Low_complexity Low_complexity 1 38 0 1181 199 66 15 chr6 75771746 75772017 -113507537 - MLT1F1 LTR MaLR -7 560 276 546 91 0 0 chr6 75772017 75772094 -113507460 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 2247 100 0 0 chr6 75772094 75772405 -113507149 - AluY SINE Alu 0 311 1 216 171 0 0 chr6 75772518 75772559 -113506995 + GA-rich Low_complexity Low_complexity 2 42 0 634 256 16 52 chr6 75772561 75772752 -113506802 - MLT1F1 LTR MaLR -357 185 2 366 92 92 0 chr6 75772762 75772892 -113506662 + (TA)n Simple_repeat Simple_repeat 1 142 0 1867 150 0 0 chr6 75772892 75773178 -113506376 - AluSx SINE Alu -24 288 3 1876 129 0 68 chr6 75773315 75773626 -113505928 + AluSx SINE Alu 1 290 -22 28 0 0 0 chr6 75773626 75773654 -113505900 + AT_rich Low_complexity Low_complexity 1 28 0 276 159 0 0 chr6 75773881 75773925 -113505629 + L2 LINE L2 3268 3311 -2 233 311 0 0 chr6 75774916 75774977 -113504577 + LTR16A LTR ERVL 73 133 -317 543 281 100 5 chr6 75775108 75775318 -113504236 + LTR16A LTR ERVL 214 443 -7 204 400 86 17 chr6 75775407 75775824 -113503730 - L2 LINE L2 -568 2746 2301 307 273 211 6 chr6 75775864 75776025 -113503529 + MER91A DNA MER1_type 3 196 0 202 267 0 0 chr6 75776158 75776203 -113503351 + MIR SINE MIR 93 137 -71 2298 91 0 7 chr6 75776755 75777063 -113502491 + AluSc SINE Alu 4 309 0 422 301 38 0 chr6 75777768 75777901 -113501653 - MIR SINE MIR -51 211 74 789 254 155 33 chr6 75777903 75778604 -113500950 + L2 LINE L2 2518 3311 -2 181 163 82 82 chr6 75778802 75778851 -113500703 - L3b LINE CR1 -156 1427 1379 213 239 239 44 chr6 75778929 75779042 -113500512 + MIR SINE MIR 19 153 -109 227 187 11 33 chr6 75779389 75779480 -113500074 + CT-rich Low_complexity Low_complexity 3 91 0 28 0 0 0 chr6 75779546 75779574 -113499980 + AT_rich Low_complexity Low_complexity 1 28 0 341 336 40 13 chr6 75779602 75779751 -113499803 - MIR SINE MIR -58 204 52 256 235 12 12 chr6 75780609 75780690 -113498864 + (TA)n Simple_repeat Simple_repeat 2 82 0 623 297 87 34 chr6 75780828 75781300 -113498254 - L1M4 LINE L1 -1527 4855 4359 1223 312 72 20 chr6 75781828 75782526 -113497028 - MER20B DNA MER1_type -49 734 1 24 53 0 0 chr6 75782607 75782645 -113496909 + AT_rich Low_complexity Low_complexity 1 38 0 30 0 0 0 chr6 75782852 75782882 -113496672 + AT_rich Low_complexity Low_complexity 1 30 0 25 75 0 0 chr6 75782968 75783021 -113496533 + AT_rich Low_complexity Low_complexity 1 53 0 26 0 0 0 chr6 75783276 75783302 -113496252 + AT_rich Low_complexity Low_complexity 1 26 0 245 267 69 38 chr6 75785038 75785169 -113494385 - L1P LINE L1 -1120 5026 4892 21 57 0 0 chr6 75785364 75785399 -113494155 + AT_rich Low_complexity Low_complexity 1 35 0 316 284 98 82 chr6 75785407 75785773 -113493781 - L1M4 LINE L1 -1515 4631 4260 1324 192 21 4 chr6 75785992 75786273 -113493281 - L1MB8 LINE L1 -272 5906 5621 3201 227 81 105 chr6 75786312 75787963 -113491591 - L1M4 LINE L1 -2089 4293 2691 198 103 0 0 chr6 75787963 75787992 -113491562 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 3201 227 81 105 chr6 75787992 75788223 -113491331 - L1M4 LINE L1 -3691 2691 2456 405 325 31 26 chr6 75788245 75788439 -113491115 - L1M4 LINE L1 -3900 2484 2290 1686 187 0 25 chr6 75788492 75788808 -113490746 - AluJo SINE Alu -4 308 1 3222 196 16 24 chr6 75789446 75790068 -113489486 + LTR51 LTR ERV1 1 619 -52 1895 148 141 11 chr6 75790068 75790445 -113489109 + MSTA LTR MaLR 3 428 0 3222 196 16 24 chr6 75790445 75790497 -113489057 + LTR51 LTR ERV1 619 670 -1 221 197 16 0 chr6 75790665 75790726 -113488828 + (TA)n Simple_repeat Simple_repeat 2 63 0 433 222 16 8 chr6 75790889 75791015 -113488539 + LTR37A LTR ERV1 291 417 -9 263 273 26 0 chr6 75791493 75791570 -113487984 + LTR49-int LTR ERV1 2891 2969 -3362 29 28 0 0 chr6 75792051 75792087 -113487467 + AT_rich Low_complexity Low_complexity 1 36 0 249 254 51 0 chr6 75792736 75792795 -113486759 + Tigger2 DNA MER2_type 2657 2718 0 27 49 0 0 chr6 75792795 75792836 -113486718 + AT_rich Low_complexity Low_complexity 1 41 0 293 273 196 7 chr6 75793420 75793563 -113485991 - MER67D LTR ERV1 0 514 345 1851 157 47 0 chr6 75793566 75793884 -113485670 + MER44D DNA MER2_type 1 603 -6 902 201 14 104 chr6 75793986 75794264 -113485290 - MER67D LTR ERV1 -258 256 4 1287 241 70 8 chr6 75794689 75795059 -113484495 + MER110 LTR ERV1 84 476 -15 22 80 0 0 chr6 75797689 75797739 -113481815 + AT_rich Low_complexity Low_complexity 1 50 0 32 26 0 0 chr6 75797834 75797873 -113481681 + AT_rich Low_complexity Low_complexity 1 39 0 315 333 29 35 chr6 75798857 75799031 -113480523 + L1MCa LINE L1 904 1076 -5350 240 254 42 0 chr6 75799504 75799575 -113479979 + L1MCa LINE L1 1283 1356 -5251 439 329 19 16 chr6 75799609 75799916 -113479638 - L1M4 LINE L1 -2489 3657 3350 564 282 115 73 chr6 75800340 75801098 -113478456 + HAL1 LINE L1 694 1483 -1024 418 317 140 16 chr6 75801195 75801624 -113477930 - L1MC/D LINE L1 -2062 5746 5265 6592 142 19 8 chr6 75801820 75803163 -113476391 - L1MA3 LINE L1 -1 6304 4943 411 343 60 55 chr6 75803163 75803693 -113475861 - L1MC/D LINE L1 -1065 5081 4549 701 178 16 4 chr6 75803778 75803917 -113475637 - L1MA8 LINE L1 -15 6288 6140 406 271 8 0 chr6 75803915 75804048 -113475506 + L1M1 LINE L1 3041 3174 -4391 * 525 297 61 18 chr6 75805983 75806148 -113473406 - MER5B DNA MER1_type -6 172 1 195 335 55 102 chr6 75807152 75807552 -113472002 + L2 LINE L2 2933 3313 0 26 39 0 20 chr6 75808759 75808772 -113470782 + AT_rich Low_complexity Low_complexity 1 13 -37 2052 128 0 25 chr6 75808772 75809092 -113470462 + AluSx SINE Alu 1 312 0 26 39 0 20 chr6 75809092 75809129 -113470425 + AT_rich Low_complexity Low_complexity 13 50 0 246 189 19 0 chr6 75809424 75809477 -113470077 - L1PB2 LINE L1 -118 6033 5980 823 108 16 0 chr6 75809477 75809606 -113469948 + L1PB2 LINE L1 6019 6149 -2 3245 154 6 40 chr6 75809637 75810439 -113469115 + L1PB4 LINE L1 5068 5845 -311 29 0 0 0 chr6 75812384 75812413 -113467141 + AT_rich Low_complexity Low_complexity 1 29 0 401 218 59 30 chr6 75812611 75812712 -113466842 - MER81 DNA DNA 0 114 11 360 0 0 0 chr6 75812838 75812878 -113466676 + (TG)n Simple_repeat Simple_repeat 2 41 0 32 57 0 0 chr6 75814569 75814622 -113464932 + AT_rich Low_complexity Low_complexity 1 53 0 203 358 73 0 chr6 75814894 75815003 -113464551 - L2 LINE L2 -8 3264 3148 2288 51 0 7 chr6 75815320 75815615 -113463939 + L1PA4 LINE L1 5863 6155 0 1357 216 14 11 chr6 75815679 75816015 -113463539 - AluJb SINE Alu 0 341 5 255 226 0 0 chr6 75816688 75816741 -113462813 + MER4-int LTR ERV1 1110 1162 -5436 403 218 35 0 chr6 75816743 75816885 -113462669 + (TA)n Simple_repeat Simple_repeat 1 147 0 22 70 0 0 chr6 75818070 75818113 -113461441 + AT_rich Low_complexity Low_complexity 1 43 0 269 256 33 44 chr6 75820286 75820376 -113459178 - MER94 DNA DNA -32 102 14 1792 235 36 32 chr6 75820873 75821376 -113458178 - MLT1D LTR MaLR 0 505 1 22 80 0 0 chr6 75821630 75821680 -113457874 + AT_rich Low_complexity Low_complexity 1 50 0 2657 99 0 18 chr6 75822149 75822531 -113457023 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr6 75822892 75822915 -113456639 + AT_rich Low_complexity Low_complexity 1 23 0 480 50 38 0 chr6 75823504 75823584 -113455970 + (TA)n Simple_repeat Simple_repeat 2 84 0 949 267 5 0 chr6 75823874 75824080 -113455474 - MER20 DNA MER1_type -1 218 12 218 114 0 45 chr6 75824429 75824473 -113455081 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 1014 231 51 51 chr6 75824481 75824776 -113454778 - AluJo SINE Alu 0 312 18 1536 190 48 21 chr6 75825303 75825634 -113453920 - MER2 DNA MER2_type -5 340 1 272 401 55 18 chr6 75825642 75825859 -113453695 - L2 LINE L2 -243 3070 2846 429 20 0 0 chr6 75825931 75825981 -113453573 + (TC)n Simple_repeat Simple_repeat 2 51 0 333 0 0 0 chr6 75825980 75826017 -113453537 + (TG)n Simple_repeat Simple_repeat 2 38 0 * 225 146 0 0 chr6 75826038 75826086 -113453468 + (GA)n Simple_repeat Simple_repeat 1 48 0 21 36 0 0 chr6 75826583 75826611 -113452943 + AT_rich Low_complexity Low_complexity 1 28 0 246 273 112 12 chr6 75827863 75828105 -113451449 - L1ME LINE L1 -239 5882 5617 16238 137 16 23 chr6 75828324 75832262 -113447292 + L1PA8 LINE L1 7 3923 -2538 6932 62 1 1 chr6 75832264 75833281 -113446273 + L1PA7 LINE L1 5134 6150 -4 24 0 0 0 chr6 75833291 75833315 -113446239 + AT_rich Low_complexity Low_complexity 1 24 0 11996 107 8 2 chr6 75833321 75835877 -113443677 + L1PA8 LINE L1 3921 6478 -9 22 56 0 0 chr6 75836064 75836100 -113443454 + AT_rich Low_complexity Low_complexity 1 36 0 767 261 121 74 chr6 75836339 75836696 -113442858 - L1ME LINE L1 -969 5177 4838 414 0 0 0 chr6 75836696 75836742 -113442812 + (TG)n Simple_repeat Simple_repeat 1 46 0 767 261 121 74 chr6 75836742 75836766 -113442788 - L1ME LINE L1 -1308 4838 4817 3211 103 13 0 chr6 75836766 75837213 -113442341 - MLT2A2 LTR ERVL 0 453 1 767 261 121 74 chr6 75837213 75837720 -113441834 - L1ME LINE L1 -1329 4817 4246 28 29 0 0 chr6 75837947 75837982 -113441572 + AT_rich Low_complexity Low_complexity 1 35 0 302 281 60 54 chr6 75839720 75839887 -113439667 - MIR SINE MIR 0 262 95 767 107 0 0 chr6 75840532 75840644 -113438910 + L1PA13 LINE L1 6033 6144 -19 22 35 0 0 chr6 75841236 75841265 -113438289 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr6 75841604 75841639 -113437915 + AT_rich Low_complexity Low_complexity 1 35 0 38 96 0 0 chr6 75841710 75841825 -113437729 + AT_rich Low_complexity Low_complexity 1 115 0 423 322 95 29 chr6 75842520 75843003 -113436551 - L2 LINE L2 -81 3232 2714 1108 342 60 25 chr6 75843064 75843723 -113435831 + L2 LINE L2 2381 3057 -256 407 356 32 0 chr6 75843742 75843930 -113435624 - L2 LINE L2 -660 2654 2461 826 335 89 49 chr6 75844053 75844840 -113434714 - L2 LINE L2 -2173 1141 316 1367 203 29 29 chr6 75844840 75845151 -113434403 + AluJo SINE Alu 1 311 -1 826 335 89 49 chr6 75845151 75845217 -113434337 - L2 LINE L2 -2998 316 254 9561 35 5 0 chr6 75845639 75847570 -113431984 + L1PA3 LINE L1 4219 6155 0 31 58 0 0 chr6 75847736 75847788 -113431766 + AT_rich Low_complexity Low_complexity 1 52 0 246 128 0 0 chr6 75848450 75848489 -113431065 + (TG)n Simple_repeat Simple_repeat 1 39 0 293 301 97 9 chr6 75848845 75848958 -113430596 + L2 LINE L2 53 175 -3139 338 356 153 14 chr6 75848983 75849278 -113430276 + L2 LINE L2 323 658 -2656 2218 91 3 0 chr6 75849315 75849600 -113429954 - AluSp SINE Alu -26 287 2 1910 215 74 32 chr6 75849623 75849887 -113429667 - L1MA9 LINE L1 0 6312 6061 1073 141 16 0 chr6 75849887 75850072 -113429482 - L1MA4A LINE L1 0 6303 6116 1910 215 74 32 chr6 75850072 75850332 -113429222 - L1MA9 LINE L1 -251 6061 5766 458 255 10 60 chr6 75850163 75850363 -113429191 - L1PA16 LINE L1 -238 5928 5739 * 899 321 153 39 chr6 75850365 75851180 -113428374 + L2 LINE L2 678 1585 -1729 209 299 132 21 chr6 75851252 75851396 -113428158 + L2 LINE L2 2043 2202 -1112 4976 138 14 9 chr6 75851431 75851822 -113427732 - L1PB4 LINE L1 0 6156 5768 432 0 0 0 chr6 75851822 75851870 -113427684 + (TG)n Simple_repeat Simple_repeat 2 49 0 4976 138 14 9 chr6 75851870 75852462 -113427092 - L1PB4 LINE L1 -388 5768 5187 1579 227 46 12 chr6 75852462 75852894 -113426660 + L1PB4 LINE L1 4730 5176 -970 970 259 71 88 chr6 75852894 75853416 -113426138 + L2 LINE L2 2195 2707 -607 22 35 0 0 chr6 75853529 75853558 -113425996 + AT_rich Low_complexity Low_complexity 1 29 0 293 304 11 0 chr6 75853949 75854041 -113425513 - MLT1K LTR MaLR -17 571 479 487 308 50 16 chr6 75855178 75855360 -113424194 + MER5A DNA MER1_type 2 189 0 22 0 0 0 chr6 75855434 75855456 -113424098 + AT_rich Low_complexity Low_complexity 1 22 0 28 71 0 0 chr6 75856331 75856387 -113423167 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr6 75856522 75856544 -113423010 + AT_rich Low_complexity Low_complexity 1 22 0 920 277 169 17 chr6 75856971 75857452 -113422102 + MLT1G1 LTR MaLR 1 523 -32 198 143 0 0 chr6 75857644 75857679 -113421875 + (CAT)n Simple_repeat Simple_repeat 2 36 0 1473 217 94 67 chr6 75858152 75858635 -113420919 - MLT1D LTR MaLR 0 626 27 27 0 0 0 chr6 75858635 75858662 -113420892 + AT_rich Low_complexity Low_complexity 1 27 0 2095 237 62 78 chr6 75859734 75861318 -113418236 - L1ME1 LINE L1 -7 6159 4536 10875 58 3 1 chr6 75861429 75863131 -113416423 - L1P1 LINE L1 -461 5694 3990 26216 50 1 1 chr6 75863231 75866566 -113412988 + L1P LINE L1 1474 4808 -1338 320 217 0 23 chr6 75866669 75866844 -113412710 + (GAATG)n Satellite Satellite 4 174 0 861 167 3 0 chr6 75866886 75867235 -113412319 + (GAATG)n Satellite Satellite 1 350 0 765 186 2 0 chr6 75867270 75867783 -113411771 + (GAATG)n Satellite Satellite 1 514 0 873 163 2 7 chr6 75867797 75868671 -113410883 + (GAATG)n Satellite Satellite 4 1045 0 602 177 0 22 chr6 75868728 75868957 -113410597 + (GAATG)n Satellite Satellite 1 223 0 858 171 2 0 chr6 75868978 75869497 -113410057 + (GAATG)n Satellite Satellite 1 520 0 1032 149 0 5 chr6 75869513 75870117 -113409437 + (GAATG)n Satellite Satellite 4 777 0 747 185 0 0 chr6 75870131 75870509 -113409045 + (GAATG)n Satellite Satellite 1 378 0 933 157 0 3 chr6 75870543 75871619 -113407935 + (GAATG)n Satellite Satellite 3 1248 0 858 178 0 0 chr6 75871697 75872639 -113406915 + (GAATG)n Satellite Satellite 1 942 0 889 159 3 2 chr6 75872678 75873317 -113406237 + (GAATG)n Satellite Satellite 1 640 0 942 160 4 0 chr6 75873447 75874176 -113405378 + (CATTC)n Satellite Satellite 1 732 0 957 170 2 2 chr6 75874198 75875352 -113404202 + (CATTC)n Satellite Satellite 1 1154 0 486 207 0 0 chr6 75875377 75875556 -113403998 + (CATTC)n Satellite Satellite 1 179 0 864 152 3 0 chr6 75875567 75875926 -113403628 + (CATTC)n Satellite Satellite 1 360 0 873 145 0 0 chr6 75875967 75876146 -113403408 + (CATTC)n Satellite Satellite 2 180 0 756 156 0 0 chr6 75876181 75876361 -113403193 + (CATTC)n Satellite Satellite 1 180 0 936 162 1 6 chr6 75876443 75877393 -113402161 + (CATTC)n Satellite Satellite 1 944 0 935 184 2 8 chr6 75877447 75878104 -113401450 + (CATTC)n Satellite Satellite 1 653 0 948 146 0 1 chr6 75878125 75879025 -113400529 + (CATTC)n Satellite Satellite 1 898 0 717 179 0 0 chr6 75879062 75879316 -113400238 + (CATTC)n Satellite Satellite 1 254 0 894 165 5 0 chr6 75879365 75879753 -113399801 + (CATTC)n Satellite Satellite 1 390 0 828 195 0 0 chr6 75879885 75880234 -113399320 + (GAATG)n Satellite Satellite 1 349 0 597 194 0 0 chr6 75880250 75880430 -113399124 + (GAATG)n Satellite Satellite 1 180 0 846 146 0 0 chr6 75880441 75880612 -113398942 + (GAATG)n Satellite Satellite 4 174 0 792 159 0 0 chr6 75880656 75880832 -113398722 + (GAATG)n Satellite Satellite 4 179 0 732 163 0 0 chr6 75880865 75881037 -113398517 + (GAATG)n Satellite Satellite 4 175 0 438 163 0 0 chr6 75881070 75881168 -113398386 + (GAATG)n Satellite Satellite 3 100 0 696 178 0 0 chr6 75881205 75881385 -113398169 + (GAATG)n Satellite Satellite 1 180 0 315 135 11 34 chr6 75881420 75881509 -113398045 + (GAATG)n Satellite Satellite 4 90 0 813 176 0 9 chr6 75881618 75882150 -113397404 + (CATTC)n Satellite Satellite 1 527 0 891 166 2 0 chr6 75882175 75882684 -113396870 + (CATTC)n Satellite Satellite 1 510 0 458 96 0 12 chr6 75882721 75882804 -113396750 + (CATTC)n Satellite Satellite 3 84 0 605 151 0 29 chr6 75882868 75883040 -113396514 + (CATTC)n Satellite Satellite 4 170 0 525 139 0 0 chr6 75883077 75883185 -113396369 + (CATTC)n Satellite Satellite 3 110 0 696 159 0 0 chr6 75883223 75883380 -113396174 + (CATTC)n Satellite Satellite 4 160 0 1276 124 4 2 chr6 75883421 75883946 -113395608 + (CATTC)n Satellite Satellite 1 526 0 633 190 0 0 chr6 75883986 75884165 -113395389 + (CATTC)n Satellite Satellite 1 179 0 891 168 0 0 chr6 75884213 75884535 -113395019 + (CATTC)n Satellite Satellite 1 322 0 918 151 3 3 chr6 75884605 75884959 -113394595 + (CATTC)n Satellite Satellite 1 354 0 786 162 0 0 chr6 75884973 75885454 -113394100 + (CATTC)n Satellite Satellite 1 481 0 801 167 0 0 chr6 75885478 75885794 -113393760 + (CATTC)n Satellite Satellite 1 316 0 606 165 6 33 chr6 75885827 75886009 -113393545 + (CATTC)n Satellite Satellite 4 180 0 672 178 0 0 chr6 75886144 75886324 -113393230 + (CATTC)n Satellite Satellite 1 180 0 762 167 0 0 chr6 75886344 75886524 -113393030 + (CATTC)n Satellite Satellite 1 180 0 882 148 4 1 chr6 75886550 75887282 -113392272 + (CATTC)n Satellite Satellite 1 734 0 795 155 0 0 chr6 75887318 75887492 -113392062 + (CATTC)n Satellite Satellite 2 175 0 282 185 0 0 chr6 75887525 75887606 -113391948 + (CATTC)n Satellite Satellite 4 84 0 534 207 0 0 chr6 75887628 75887807 -113391747 + (CATTC)n Satellite Satellite 2 180 0 894 143 0 0 chr6 75887822 75887997 -113391557 + (CATTC)n Satellite Satellite 1 175 0 657 154 0 0 chr6 75888034 75888177 -113391377 + (CATTC)n Satellite Satellite 3 145 0 786 157 0 0 chr6 75888218 75888396 -113391158 + (CATTC)n Satellite Satellite 2 179 0 378 170 0 0 chr6 75888420 75888514 -113391040 + (CATTC)n Satellite Satellite 4 97 0 882 179 0 0 chr6 75888528 75888947 -113390607 + (CATTC)n Satellite Satellite 1 419 0 384 215 0 0 chr6 75888999 75889157 -113390397 + (CATTC)n Satellite Satellite 3 160 0 990 154 0 0 chr6 75889187 75889835 -113389719 + (CATTC)n Satellite Satellite 1 648 0 372 165 0 0 chr6 75889860 75889951 -113389603 + (CATTC)n Satellite Satellite 4 94 0 684 162 0 0 chr6 75890040 75890207 -113389347 + (CATTC)n Satellite Satellite 4 170 0 756 184 0 0 chr6 75890248 75890607 -113388947 + (CATTC)n Satellite Satellite 1 359 0 837 177 0 0 chr6 75890635 75890953 -113388601 + (CATTC)n Satellite Satellite 1 318 0 870 151 0 0 chr6 75890969 75891202 -113388352 + (CATTC)n Satellite Satellite 1 233 0 229 188 0 0 chr6 75891204 75891252 -113388302 + (CACTC)n Simple_repeat Simple_repeat 3 50 0 942 139 3 16 chr6 75891262 75891621 -113387933 + (CATTC)n Satellite Satellite 1 355 0 783 178 0 0 chr6 75891584 75891758 -113387796 + (CACTC)n Simple_repeat Simple_repeat 4 177 0 * 276 229 0 0 chr6 75891772 75891855 -113387699 + (CTATT)n Simple_repeat Simple_repeat 3 85 0 1050 140 0 1 chr6 75891871 75892550 -113387004 + (CATTC)n Satellite Satellite 1 677 0 903 170 2 0 chr6 75892576 75893089 -113386465 + (CATTC)n Satellite Satellite 1 514 0 993 152 0 0 chr6 75893105 75893596 -113385958 + (CATTC)n Satellite Satellite 1 491 0 969 175 5 6 chr6 75893696 75899071 -113380483 - ALR/Alpha Satellite centromeric 0 5372 1 990 174 8 0 chr6 75899177 75902618 -113376936 - ALR/Alpha Satellite centromeric 0 3468 1 1036 169 3 2 chr6 75902759 75904263 -113375291 - ALR/Alpha Satellite centromeric 0 1505 1 5076 64 3 2 chr6 75904273 75905190 -113374364 + L1PA4 LINE L1 5028 5945 -210 1068 142 2 3 chr6 75905290 75905719 -113373835 + (GAATG)n Satellite Satellite 1 607 0 810 183 0 0 chr6 75905782 75906129 -113373425 + (GAATG)n Satellite Satellite 1 347 0 873 170 2 0 chr6 75906184 75906606 -113372948 + (GAATG)n Satellite Satellite 1 423 0 465 226 0 0 chr6 75906654 75906800 -113372754 + (GAGTG)n Simple_repeat Simple_repeat 4 149 0 1040 153 1 7 chr6 75906778 75907333 -113372221 + (GAATG)n Satellite Satellite 1 733 0 1040 120 0 16 chr6 75907333 75907516 -113372038 + (GAATG)n Satellite Satellite 1 180 0 213 135 27 0 chr6 75907516 75907553 -113372001 + GA-rich Low_complexity Low_complexity 2 39 0 562 179 6 6 chr6 75907776 75907955 -113371599 + (GAATG)n Satellite Satellite 1 179 0 785 197 2 0 chr6 75907991 75908436 -113371118 + (GAATG)n Satellite Satellite 1 446 0 792 173 0 0 chr6 75908469 75908648 -113370906 + (GAATG)n Satellite Satellite 2 180 0 1169 145 4 3 chr6 75908688 75909282 -113370272 + (GAATG)n Satellite Satellite 1 774 0 828 147 0 0 chr6 75909299 75909535 -113370019 + (GAATG)n Satellite Satellite 1 236 0 507 215 0 0 chr6 75909553 75909730 -113369824 + (GAATG)n Satellite Satellite 4 180 0 1002 146 0 0 chr6 75909748 75910381 -113369173 + (GAATG)n Satellite Satellite 1 633 0 828 173 0 0 chr6 75910515 75910694 -113368860 + (GAATG)n Satellite Satellite 2 180 0 807 186 0 0 chr6 75910742 75911083 -113368471 + (GAATG)n Satellite Satellite 1 341 0 993 193 0 0 chr6 75911084 75911369 -113368185 + (GAGTG)n Simple_repeat Simple_repeat 1 285 0 1071 167 0 0 chr6 75911369 75911861 -113367693 + (GAATG)n Satellite Satellite 1 492 0 765 176 0 0 chr6 75911904 75912126 -113367428 + (GAGTG)n Simple_repeat Simple_repeat 1 222 0 837 140 0 0 chr6 75912130 75912294 -113367260 + (GAATG)n Satellite Satellite 1 164 0 217 49 0 49 chr6 75912308 75912349 -113367205 - HSATII Satellite Satellite -86 84 46 657 208 0 0 chr6 75912392 75912560 -113366994 + (GAATG)n Satellite Satellite 5 172 0 972 133 0 0 chr6 75912572 75912679 -113366875 + (GAGTG)n Simple_repeat Simple_repeat 1 287 0 972 133 0 0 chr6 75912679 75912859 -113366695 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 432 156 0 0 chr6 75913085 75913175 -113366379 + (CATTC)n Satellite Satellite 5 94 0 606 193 0 0 chr6 75913209 75913370 -113366184 + (CATTC)n Satellite Satellite 4 164 0 858 160 0 0 chr6 75913382 75913654 -113365900 + (CATTC)n Satellite Satellite 1 272 0 765 163 0 0 chr6 75913697 75913875 -113365679 + (CATTC)n Satellite Satellite 3 180 0 647 146 0 30 chr6 75913886 75914050 -113365504 + (CATTC)n Satellite Satellite 2 160 0 930 145 2 6 chr6 75914128 75914743 -113364811 + (CATTC)n Satellite Satellite 1 612 0 1004 170 4 9 chr6 75914808 75915341 -113364213 + (CATTC)n Satellite Satellite 1 530 0 710 170 6 0 chr6 75915382 75915553 -113364001 + (CATTC)n Satellite Satellite 4 175 0 381 198 0 0 chr6 75915587 75915703 -113363851 + (CATTC)n Satellite Satellite 5 120 0 818 160 0 0 chr6 75915768 75916198 -113363356 + (CATTC)n Satellite Satellite 1 430 0 663 182 0 0 chr6 75916247 75916483 -113363071 + (CATTC)n Satellite Satellite 1 236 0 876 156 0 0 chr6 75916501 75917121 -113362433 + (CATTC)n Satellite Satellite 1 620 0 576 195 0 0 chr6 75917154 75917328 -113362226 + (CATTC)n Satellite Satellite 4 177 0 804 143 0 0 chr6 75917342 75917510 -113362044 + (CATTC)n Satellite Satellite 2 169 0 917 184 4 0 chr6 75917615 75918203 -113361351 - ALR/Alpha Satellite centromeric 0 590 1 1163 158 4 2 chr6 75918214 75924584 -113354970 - ALR/Alpha Satellite centromeric 0 6381 1 2660 92 1 6 chr6 75924584 75925733 -113353821 + L1P LINE L1 1 1271 -4875 1164 157 4 1 chr6 75925835 75935454 -113344100 + ALR/Alpha Satellite centromeric 1 9642 -33 1131 167 1 1 chr6 75935554 75940248 -113339306 + ALR/Alpha Satellite centromeric 1 4696 -43 888 87 0 0 chr6 75940353 75940480 -113339074 + L1PA4 LINE L1 6026 6152 -3 988 174 1 0 chr6 75940518 75941289 -113338265 - ALR/Alpha Satellite centromeric -11 771 1 865 141 0 27 chr6 75941303 75941488 -113338066 + (GAATG)n Satellite Satellite 1 180 0 966 146 0 0 chr6 75941504 75941675 -113337879 + (GAATG)n Satellite Satellite 4 174 0 399 163 0 0 chr6 75941706 75941786 -113337768 + (GAGTG)n Simple_repeat Simple_repeat 2 81 0 354 208 21 4 chr6 75941786 75941875 -113337679 + AluJ/FRAM SINE Alu 225 279 -23 903 152 0 0 chr6 75941885 75942063 -113337491 + (GAATG)n Simple_repeat Simple_repeat 3 180 0 773 176 6 0 chr6 75942071 75942247 -113337307 + (GAGTG)n Simple_repeat Simple_repeat 3 179 0 183 235 0 0 chr6 75942270 75942321 -113337233 + (CGGAA)n Simple_repeat Simple_repeat 4 54 0 540 205 0 0 chr6 75942325 75942486 -113337068 + (GAGTG)n Simple_repeat Simple_repeat 4 164 0 * 738 189 0 0 chr6 75942454 75942634 -113336920 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 260 184 0 0 chr6 75942638 75942687 -113336867 + (GAGTG)n Simple_repeat Simple_repeat 3 51 0 762 179 0 0 chr6 75942688 75942856 -113336698 + (GAATG)n Satellite Satellite 4 171 0 951 156 0 0 chr6 75942869 75943048 -113336506 + (GAATG)n Satellite Satellite 2 180 0 888 156 0 0 chr6 75943069 75943249 -113336305 + (GAATG)n Satellite Satellite 1 180 0 237 222 0 0 chr6 75943262 75943325 -113336229 + (GAATG)n Satellite Satellite 5 67 0 752 177 6 0 chr6 75943345 75943520 -113336034 + (GAATG)n Satellite Satellite 4 179 0 356 179 0 0 chr6 75943539 75943595 -113335959 + AluJ/FRAM SINE Alu 225 280 -22 780 182 4 0 chr6 75943604 75943844 -113335710 + (GAATG)n Satellite Satellite 1 241 0 693 199 0 0 chr6 75943859 75944030 -113335524 + (GAATG)n Satellite Satellite 4 174 0 228 186 0 0 chr6 75944034 75944093 -113335461 + (GAGTG)n Simple_repeat Simple_repeat 1 59 0 1074 112 0 0 chr6 75944108 75944178 -113335376 + (GAATG)n Satellite Satellite 1 248 0 1074 112 0 0 chr6 75944178 75944356 -113335198 + (GAATG)n Satellite Satellite 3 180 0 1032 133 0 0 chr6 75944423 75944603 -113334951 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 366 150 0 0 chr6 75944648 75944708 -113334846 + (GAATG)n Simple_repeat Simple_repeat 1 60 0 867 160 0 0 chr6 75944710 75944885 -113334669 + (GAGTG)n Simple_repeat Simple_repeat 4 178 0 499 198 8 8 chr6 75944901 75945151 -113334403 + (GAATG)n Satellite Satellite 1 250 0 293 239 7 0 chr6 75945172 75945310 -113334244 + (CGAAT)n Simple_repeat Simple_repeat 2 140 0 912 154 0 0 chr6 75945316 75945491 -113334063 + (GAATG)n Satellite Satellite 1 175 0 897 150 0 0 chr6 75945551 75945731 -113333823 + (GAATG)n Satellite Satellite 1 180 0 615 195 0 0 chr6 75945747 75946068 -113333486 + (GAATG)n Satellite Satellite 1 321 0 933 150 0 0 chr6 75946081 75946261 -113333293 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 768 177 0 0 chr6 75946306 75946481 -113333073 + (GAATG)n Satellite Satellite 5 179 0 186 71 0 0 chr6 75946519 75946547 -113333007 + (GAATG)n Satellite Satellite 4 31 0 1097 172 1 1 chr6 75946652 75948872 -113330682 + ALR/Alpha Satellite centromeric 1 2221 0 1067 168 16 1 chr6 75948981 75951062 -113328492 + ALR/Alpha Satellite centromeric 1 2113 -2 1099 165 4 1 chr6 75951073 75955312 -113324242 + ALR/Alpha Satellite centromeric 1 4251 -66 3668 43 0 0 chr6 75955413 75955899 -113323655 + L1PA3 LINE L1 5698 6183 0 1188 168 6 1 chr6 75955947 75962663 -113316891 + ALR/Alpha Satellite centromeric 1 6748 -8 1124 165 1 1 chr6 75962768 75964051 -113315503 + ALR/Alpha Satellite centromeric 1 1283 -66 1052 181 1 0 chr6 75964151 75965226 -113314328 + ALR/Alpha Satellite centromeric 1 1075 -46 1136 173 6 3 chr6 75965326 75965559 -113313995 + ALR/Alpha Satellite centromeric 1 232 -2854 754 32 0 0 chr6 75965559 75965652 -113313902 - L1PA2 LINE L1 -1 6154 6062 1136 173 6 3 chr6 75965652 75968404 -113311150 + ALR/Alpha Satellite centromeric 232 3086 0 1138 170 2 1 chr6 75968507 75975293 -113304261 + ALR/Alpha Satellite centromeric 1 6793 0 971 179 3 9 chr6 75975304 75976709 -113302845 + ALR/Alpha Satellite centromeric 1 1396 -43 1072 163 7 1 chr6 75976811 75979365 -113300189 + ALR/Alpha Satellite centromeric 1 2570 -13 1018 169 6 1 chr6 75979378 75985162 -113294392 + ALR/Alpha Satellite centromeric 1 5810 -24 570 207 0 0 chr6 75985262 75985492 -113294062 + (GAATG)n Satellite Satellite 1 230 0 465 158 0 0 chr6 75985526 75985627 -113293927 + (GAATG)n Satellite Satellite 4 104 0 958 143 3 3 chr6 75985660 75986019 -113293535 + (GAATG)n Satellite Satellite 1 359 0 922 181 3 3 chr6 75986040 75986397 -113293157 + (GAATG)n Satellite Satellite 1 357 0 864 134 0 0 chr6 75986431 75986602 -113292952 + (GAATG)n Satellite Satellite 4 174 0 639 183 0 0 chr6 75986655 75986835 -113292719 + (GAATG)n Satellite Satellite 1 180 0 930 145 0 0 chr6 75986850 75987248 -113292306 + (GAATG)n Satellite Satellite 1 398 0 306 195 0 0 chr6 75987325 75987412 -113292142 + (GAATG)n Satellite Satellite 4 90 0 864 161 0 0 chr6 75987460 75987878 -113291676 + (GAATG)n Satellite Satellite 1 418 0 222 164 0 0 chr6 75987890 75987945 -113291609 + (GAATG)n Satellite Satellite 5 59 0 975 153 0 3 chr6 75987968 75988811 -113290743 + (GAATG)n Satellite Satellite 2 1018 0 557 190 6 0 chr6 75988835 75989009 -113290545 + (GAATG)n Satellite Satellite 4 178 0 525 189 0 0 chr6 75989087 75989246 -113290308 + (GAATG)n Satellite Satellite 2 160 0 885 150 0 0 chr6 75989257 75989437 -113290117 + (GAATG)n Satellite Satellite 1 180 0 1085 146 4 1 chr6 75989472 75990072 -113289482 + (GAATG)n Satellite Satellite 1 781 0 411 201 0 0 chr6 75990090 75990229 -113289325 + (GAATG)n Satellite Satellite 2 140 0 837 184 2 0 chr6 75990271 75990799 -113288755 + (GAATG)n Satellite Satellite 1 529 0 912 169 0 0 chr6 75990820 75991198 -113288356 + (GAATG)n Satellite Satellite 1 378 0 567 197 0 0 chr6 75991210 75991388 -113288166 + (GAATG)n Satellite Satellite 2 179 0 762 162 0 0 chr6 75991415 75991594 -113287960 + (GAATG)n Satellite Satellite 1 179 0 998 158 3 6 chr6 75991614 75992616 -113286938 + (GAATG)n Satellite Satellite 2 1175 0 849 167 0 0 chr6 75992642 75992816 -113286738 + (GAGTG)n Simple_repeat Simple_repeat 1 174 0 270 153 0 0 chr6 75992835 75992894 -113286660 + (GAATG)n Satellite Satellite 3 61 0 420 219 0 0 chr6 75992907 75993071 -113286483 + (GAATG)n Satellite Satellite 1 164 0 957 172 0 11 chr6 75993101 75993466 -113286088 + (GAATG)n Satellite Satellite 1 540 0 765 158 0 0 chr6 75993486 75993715 -113285839 + (GAATG)n Satellite Satellite 1 229 0 1254 67 0 0 chr6 75993731 75993909 -113285645 + (GAATG)n Satellite Satellite 3 180 0 806 181 5 0 chr6 75993931 75994374 -113285180 + (GAATG)n Satellite Satellite 1 445 0 277 204 0 0 chr6 75994375 75994429 -113285125 + (GAGTG)n Simple_repeat Simple_repeat 1 54 0 915 189 1 0 chr6 75994429 75995161 -113284393 + (GAATG)n Satellite Satellite 1 733 0 818 165 4 0 chr6 75995161 75995419 -113284135 + (GAGTG)n Simple_repeat Simple_repeat 1 259 0 944 124 6 0 chr6 75995422 75995600 -113283954 + (GAATG)n Satellite Satellite 2 180 0 206 77 77 0 chr6 75995606 75995645 -113283909 - HSATII Satellite Satellite -82 88 47 663 196 0 0 chr6 75995654 75995827 -113283727 + (GAATG)n Satellite Satellite 5 177 0 204 163 0 0 chr6 75995867 75995910 -113283644 + (GAGTG)n Simple_repeat Simple_repeat 2 44 0 782 176 4 0 chr6 75996026 75996752 -113282802 + (GAATG)n Satellite Satellite 1 729 0 827 143 0 28 chr6 75996773 75996955 -113282599 + (GAATG)n Satellite Satellite 4 180 0 885 167 0 8 chr6 75996966 75997278 -113282276 + (GAATG)n Satellite Satellite 3 486 0 405 206 0 0 chr6 75997282 75997379 -113282175 + (GAGTG)n Simple_repeat Simple_repeat 5 101 0 879 161 0 0 chr6 75997398 75997758 -113281796 + (GAGTG)n Simple_repeat Simple_repeat 1 360 0 984 151 0 0 chr6 75997748 75998107 -113281447 + (GAATG)n Satellite Satellite 1 359 0 1407 144 2 0 chr6 75998134 75998607 -113280947 + (GAATG)n Satellite Satellite 1 474 0 654 193 0 0 chr6 75998625 75998796 -113280758 + (GAATG)n Satellite Satellite 2 172 0 205 240 0 0 chr6 75998799 75998849 -113280705 + (GAGTG)n Simple_repeat Simple_repeat 4 53 0 674 171 6 0 chr6 75998862 75999038 -113280516 + (GAATG)n Satellite Satellite 4 180 0 993 123 0 0 chr6 75999056 75999235 -113280319 + (GAATG)n Satellite Satellite 2 180 0 200 128 0 43 chr6 75999238 75999285 -113280269 - HSATII Satellite Satellite -79 91 47 573 227 0 0 chr6 75999289 75999461 -113280093 + (GAATG)n Satellite Satellite 1 172 0 * 705 185 0 0 chr6 75999423 75999601 -113279953 + (GAGTG)n Simple_repeat Simple_repeat 1 178 0 286 119 0 0 chr6 75999606 75999648 -113279906 + (GAATG)n Satellite Satellite 4 45 0 962 139 0 10 chr6 75999666 75999987 -113279567 + (GAATG)n Satellite Satellite 4 491 0 702 180 0 0 chr6 76000012 76000190 -113279364 + (GAATG)n Satellite Satellite 3 180 0 846 171 6 3 chr6 76000236 76000581 -113278973 + (GAATG)n Satellite Satellite 1 345 0 226 114 0 0 chr6 76000588 76000623 -113278931 + (GAGTG)n Simple_repeat Simple_repeat 1 35 0 858 162 0 0 chr6 76000623 76000802 -113278752 + (GAATG)n Simple_repeat Simple_repeat 2 180 0 1096 162 2 1 chr6 76000918 76003505 -113276049 + ALR/Alpha Satellite centromeric 1 2591 -74 29058 74 4 2 chr6 76003506 76007547 -113272007 + L1P LINE L1 1 4048 -2098 1091 163 4 2 chr6 76007649 76019253 -113260301 - ALR/Alpha Satellite centromeric 0 11626 1 1057 168 3 2 chr6 76019361 76022622 -113256932 - ALR/Alpha Satellite centromeric -8 3264 1 2810 80 8 0 chr6 76022637 76023025 -113256529 - L1PA3 LINE L1 0 6155 5765 4923 258 75 47 chr6 76073262 76075014 -113204540 - L1ME1 LINE L1 -7 6159 4458 2109 137 0 0 chr6 76075014 76075320 -113204234 - AluSg SINE Alu -4 306 1 4923 258 75 47 chr6 76075320 76075511 -113204043 - L1ME1 LINE L1 -1708 4458 4274 393 22 0 0 chr6 76075511 76075557 -113203997 + (TG)n Simple_repeat Simple_repeat 2 47 0 4923 258 75 47 chr6 76075557 76076888 -113202666 - L1ME1 LINE L1 -1892 4274 2734 381 286 19 0 chr6 76076917 76077022 -113202532 + MER96 DNA MER1_type? 68 174 -1 1830 195 31 51 chr6 76078020 76078472 -113201082 - L1MA6 LINE L1 0 6300 5858 1222 171 17 4 chr6 76078461 76078701 -113200853 + L1MA6 LINE L1 5642 5884 -416 * 23 33 0 0 chr6 76078706 76078736 -113200818 + AT_rich Low_complexity Low_complexity 1 30 0 300 252 191 0 chr6 76079141 76079272 -113200282 - L1MD3 LINE L1 -11 7984 7829 3305 237 41 26 chr6 76079278 76079703 -113199851 - L1MD2 LINE L1 -226 6133 5716 1256 229 59 28 chr6 76079703 76080057 -113199497 + MLT1A1 LTR MaLR 1 365 0 3305 237 41 26 chr6 76080057 76080662 -113198892 - L1MD2 LINE L1 -643 5716 5081 326 304 46 51 chr6 76081007 76081224 -113198330 - L2 LINE L2 -1 3312 3097 2042 115 7 0 chr6 76081344 76081632 -113197922 + AluSg SINE Alu 1 290 -20 481 316 6 17 chr6 76081696 76081870 -113197684 + L2 LINE L2 3142 3313 0 2105 312 96 92 chr6 76081883 76083997 -113195557 - L2 LINE L2 -342 2972 850 547 237 50 7 chr6 76085284 76085423 -113194131 - MER58B DNA MER1_type -3 338 194 325 306 130 0 chr6 76085454 76085562 -113193992 - MIR SINE MIR -36 226 105 857 57 0 0 chr6 76086056 76086162 -113193392 - L1PA8A LINE L1 -509 5622 5517 3170 79 46 18 chr6 76086162 76086614 -113192940 + L1PA8A LINE L1 5664 6131 0 21 57 0 0 chr6 76087045 76087080 -113192474 + AT_rich Low_complexity Low_complexity 1 35 0 945 204 62 51 chr6 76087318 76087545 -113192009 - MER33 DNA MER1_type -2261 324 91 13357 158 30 8 chr6 76087545 76089911 -113189643 - Tigger1 DNA MER2_type 0 2418 1 945 204 62 51 chr6 76089911 76090015 -113189539 - MER33 DNA MER1_type -2494 91 1 754 293 62 82 chr6 76090258 76091054 -113188500 + L1ME3A LINE L1 5321 6100 -70 544 265 39 44 chr6 76091204 76091385 -113188169 - MER5A DNA MER1_type -9 180 1 1305 197 21 32 chr6 76093755 76094034 -113185520 - AluJo SINE Alu -25 287 12 25 0 0 0 chr6 76094174 76094199 -113185355 + AT_rich Low_complexity Low_complexity 1 25 0 232 298 114 13 chr6 76094982 76095140 -113184414 - L1MD2 LINE L1 -1477 4669 4496 202 351 73 32 chr6 76095283 76095531 -113184023 + L3 LINE CR1 1253 1510 -67 25 75 0 0 chr6 76095726 76095779 -113183775 + AT_rich Low_complexity Low_complexity 1 53 0 283 304 151 27 chr6 76095844 76096143 -113183411 + L1ME LINE L1 5482 5817 -304 332 288 80 18 chr6 76096152 76096315 -113183239 - MIR SINE MIR 0 262 90 2073 100 21 0 chr6 76096667 76096958 -113182596 + AluSp SINE Alu 1 297 -16 606 231 81 0 chr6 76097676 76097836 -113181718 - MIR SINE MIR -24 238 66 3824 196 175 27 chr6 76097859 76098851 -113180703 + L1M1 LINE L1 15 1153 -6412 211 323 72 54 chr6 76098853 76099240 -113180314 + L2 LINE L2 1829 2222 -1092 25 31 0 0 chr6 76099252 76099284 -113180270 + AT_rich Low_complexity Low_complexity 1 32 0 370 244 84 34 chr6 76100020 76100139 -113179415 - L2 LINE L2 -38 3275 3151 21 0 0 0 chr6 76100179 76100200 -113179354 + AT_rich Low_complexity Low_complexity 1 21 0 943 281 183 75 chr6 76100283 76101027 -113178527 - L2 LINE L2 -383 2931 2108 2384 64 3 0 chr6 76102089 76102385 -113177169 - AluY SINE Alu -14 297 1 21 89 0 0 chr6 76103136 76103192 -113176362 + AT_rich Low_complexity Low_complexity 1 56 0 487 161 0 0 chr6 76103329 76103410 -113176144 + L1MD2 LINE L1 6263 6343 -16 1829 177 29 29 chr6 76103443 76103827 -113175727 + MLT1B LTR MaLR 7 390 0 406 319 12 50 chr6 76103893 76104235 -113175319 + L1M4 LINE L1 3839 4167 -1979 324 314 201 31 chr6 76104499 76104853 -113174701 + L1M4 LINE L1 4419 4832 -1314 8665 48 11 3 chr6 76105621 76107512 -113172042 - L1PA5 LINE L1 0 6154 4257 183 263 53 26 chr6 76107723 76107799 -113171755 - L2 LINE L2 -262 3010 2933 22 0 0 0 chr6 76108141 76108163 -113171391 + AT_rich Low_complexity Low_complexity 1 22 0 479 147 25 19 chr6 76108605 76108762 -113170792 + (TA)n Simple_repeat Simple_repeat 2 159 0 21 100 0 0 chr6 76109022 76109092 -113170462 + AT_rich Low_complexity Low_complexity 1 70 0 368 233 42 33 chr6 76109486 76109606 -113169948 - MIR3 SINE MIR -6 202 82 182 148 0 0 chr6 76109710 76109737 -113169817 + L2 LINE L2 3023 3049 -264 21 0 0 0 chr6 76110151 76110172 -113169382 + AT_rich Low_complexity Low_complexity 1 21 0 1984 134 3 10 chr6 76110239 76110546 -113169008 + AluSc SINE Alu 1 305 -4 230 247 47 0 chr6 76110585 76110670 -113168884 - L1MC4 LINE L1 -1340 6702 6614 * 315 257 10 0 chr6 76110669 76110772 -113168782 - L1MCa LINE L1 -1339 6983 1995 267 228 43 43 chr6 76110690 76110782 -113168772 + L1MC4 LINE L1 6614 6705 -1337 * 240 245 21 75 chr6 76110785 76110879 -113168675 + L1MC4 LINE L1 6613 6701 -1341 378 252 52 17 chr6 76110883 76110998 -113168556 + (CATATA)n Simple_repeat Simple_repeat 1 119 0 471 283 0 0 chr6 76111000 76111177 -113168377 + (CATA)n Simple_repeat Simple_repeat 4 180 0 559 244 13 15 chr6 76111182 76111580 -113167974 + (CATATA)n Simple_repeat Simple_repeat 1 397 0 21 71 0 0 chr6 76111739 76111781 -113167773 + AT_rich Low_complexity Low_complexity 1 42 0 180 318 66 93 chr6 76112254 76112405 -113167149 + MIR SINE MIR 8 154 -108 24 77 0 0 chr6 76114545 76114597 -113164957 + AT_rich Low_complexity Low_complexity 1 52 0 249 361 37 42 chr6 76114715 76114906 -113164648 - MIR SINE MIR 0 262 73 414 146 0 0 chr6 76115083 76115165 -113164389 + (TA)n Simple_repeat Simple_repeat 1 82 0 248 262 35 106 chr6 76115552 76115693 -113163861 - L2 LINE L2 -214 3058 2928 26 0 0 0 chr6 76118120 76118146 -113161408 + AT_rich Low_complexity Low_complexity 1 26 0 615 276 89 39 chr6 76118225 76118562 -113160992 - LTR16A LTR ERVL -95 355 2 23 0 0 0 chr6 76119683 76119706 -113159848 + AT_rich Low_complexity Low_complexity 1 23 0 186 238 0 0 chr6 76119843 76119885 -113159669 + MIR SINE MIR 183 224 -38 22 35 0 0 chr6 76120094 76120123 -113159431 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 76121131 76121152 -113158402 + AT_rich Low_complexity Low_complexity 1 21 0 5522 172 33 10 chr6 76121155 76123186 -113156368 - L1MA6 LINE L1 -5 6295 4230 2276 170 101 191 chr6 76123207 76123937 -113155617 + L1 LINE L1 3167 3752 -2394 2131 99 7 3 chr6 76123937 76124229 -113155325 + AluSc SINE Alu 1 293 -16 2276 170 101 191 chr6 76124229 76124675 -113154879 + L1 LINE L1 3752 4237 -1909 382 307 73 58 chr6 76124699 76124904 -113154650 + MLT1I LTR MaLR 1 208 -201 1439 230 3 0 chr6 76124905 76125231 -113154323 - AluJb SINE Alu 0 327 1 22 56 0 0 chr6 76126748 76126784 -113152770 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 76127335 76127356 -113152198 + AT_rich Low_complexity Low_complexity 1 21 0 314 176 0 0 chr6 76127386 76127437 -113152117 + L2 LINE L2 3263 3313 0 180 77 0 0 chr6 76127705 76127731 -113151823 + (TG)n Simple_repeat Simple_repeat 2 27 0 450 201 14 7 chr6 76127735 76127781 -113151773 + (TA)n Simple_repeat Simple_repeat 1 45 -95 226 276 11 11 chr6 76127781 76127868 -113151686 - L1MCa LINE L1 -4334 2092 2006 450 201 14 7 chr6 76127868 76127874 -113151680 + (TA)n Simple_repeat Simple_repeat 45 140 0 1378 264 53 38 chr6 76128897 76129420 -113150134 + LTR55 LTR ERV 1 531 -17 23 54 0 0 chr6 76129460 76129497 -113150057 + AT_rich Low_complexity Low_complexity 1 37 0 1832 255 28 52 chr6 76129510 76130199 -113149355 + L1ME1 LINE L1 5445 6116 -50 221 134 60 15 chr6 76130279 76130346 -113149208 + (TTATA)n Simple_repeat Simple_repeat 4 73 0 703 274 54 80 chr6 76130737 76131328 -113148226 + L2 LINE L2 2596 3306 -7 996 54 78 0 chr6 76131554 76131683 -113147871 - MER85 DNA T2_type 0 139 1 23 78 0 0 chr6 76131696 76131747 -113147807 + AT_rich Low_complexity Low_complexity 1 51 0 1168 213 28 72 chr6 76132950 76133241 -113146313 + AluJb SINE Alu 3 280 -32 254 50 25 0 chr6 76133241 76133281 -113146273 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 24 0 0 0 chr6 76133399 76133423 -113146131 + AT_rich Low_complexity Low_complexity 1 24 0 1174 215 40 22 chr6 76133460 76133734 -113145820 + AluJb SINE Alu 1 279 -33 306 0 0 0 chr6 76133734 76133768 -113145786 + (CAAT)n Simple_repeat Simple_repeat 3 36 0 1303 229 23 54 chr6 76134385 76134773 -113144781 - LTR55 LTR ERV -6 542 167 529 113 0 0 chr6 76134774 76134854 -113144700 - MADE1 DNA Mariner 0 80 1 * 927 163 18 0 chr6 76134854 76135018 -113144536 - LTR55 LTR ERV -381 167 1 349 325 125 10 chr6 76135108 76135271 -113144283 + L1M4 LINE L1 4258 4401 -1745 279 93 0 0 chr6 76135271 76135314 -113144240 + (CA)n Simple_repeat Simple_repeat 2 44 0 349 325 125 10 chr6 76135314 76135445 -113144109 + L1M4 LINE L1 4401 4586 -1560 24 0 0 0 chr6 76135448 76135472 -113144082 + AT_rich Low_complexity Low_complexity 1 24 0 276 102 0 0 chr6 76136247 76136296 -113143258 + (TTAG)n Simple_repeat Simple_repeat 2 50 0 628 199 80 11 chr6 76136801 76136977 -113142577 - MER53 DNA DNA 0 189 2 268 344 8 16 chr6 76138051 76138176 -113141378 + MIR SINE MIR 139 262 0 24 32 0 0 chr6 76138176 76138207 -113141347 + AT_rich Low_complexity Low_complexity 1 31 0 1908 121 0 0 chr6 76138661 76138933 -113140621 + AluSg SINE Alu 39 310 0 1011 203 18 31 chr6 76138960 76139182 -113140372 + AluJo SINE Alu 84 302 -10 22 0 0 0 chr6 76140622 76140644 -113138910 + AT_rich Low_complexity Low_complexity 1 22 0 607 323 190 7 chr6 76142167 76142573 -113136981 + MLT1G1 LTR MaLR 109 588 -7 26 30 0 0 chr6 76143164 76143197 -113136357 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr6 76143266 76143295 -113136259 + AT_rich Low_complexity Low_complexity 1 29 0 257 125 31 0 chr6 76143502 76143566 -113135988 + (CAGA)n Simple_repeat Simple_repeat 3 68 0 25 0 0 0 chr6 76143826 76143851 -113135703 + AT_rich Low_complexity Low_complexity 1 25 0 2287 93 0 0 chr6 76144350 76144641 -113134913 - AluSc SINE Alu -18 291 1 191 295 49 0 chr6 76146229 76146290 -113133264 - MIR SINE MIR -48 214 151 240 240 8 80 chr6 76146710 76146835 -113132719 + L1M4 LINE L1 1118 1233 -5151 247 227 91 53 chr6 76146875 76147007 -113132547 + L1M4 LINE L1 1263 1399 -4983 1426 264 54 37 chr6 76147060 76147641 -113131913 + L1M4 LINE L1 4832 5402 -980 2048 103 0 38 chr6 76147641 76147933 -113131621 + AluSc SINE Alu 2 282 -27 198 0 0 0 chr6 76147940 76147962 -113131592 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1426 264 54 37 chr6 76147962 76148070 -113131484 + L1M4 LINE L1 5407 5541 -841 3677 156 9 3 chr6 76148381 76149023 -113130531 + L1MA5 LINE L1 5650 6295 -5 2265 67 0 67 chr6 76149304 76149634 -113129920 - AluY SINE Alu -1 310 3 26 50 0 0 chr6 76150892 76150932 -113128622 + AT_rich Low_complexity Low_complexity 1 40 0 2201 121 48 25 chr6 76151458 76151813 -113127741 - THE1B LTR MaLR 0 364 2 1050 233 23 0 chr6 76152578 76152797 -113126757 + MER58A DNA MER1_type 1 224 0 1683 177 10 0 chr6 76153289 76153583 -113125971 + AluSx SINE Alu 1 297 -15 845 245 94 6 chr6 76154296 76154635 -113124919 - MER114 LTR ERV -104 544 176 11426 77 2 0 chr6 76154637 76156189 -113123365 - L1PA7 LINE L1 -1689 4457 2903 6542 109 6 5 chr6 76156189 76157893 -113121661 + L1PA7 LINE L1 4437 6141 -13 29 28 0 0 chr6 76158719 76158755 -113120799 + AT_rich Low_complexity Low_complexity 1 36 0 333 0 0 0 chr6 76159037 76159074 -113120480 + (CA)n Simple_repeat Simple_repeat 2 38 0 25 31 0 0 chr6 76159368 76159400 -113120154 + AT_rich Low_complexity Low_complexity 1 32 0 1884 184 34 31 chr6 76159489 76159876 -113119678 + MLT1B LTR MaLR 3 390 0 579 137 24 8 chr6 76160061 76160185 -113119369 + GA-rich Low_complexity Low_complexity 3 128 0 1981 96 15 0 chr6 76160677 76160971 -113118583 - AluSx SINE Alu 0 308 11 32 0 0 0 chr6 76162000 76162032 -113117522 + AT_rich Low_complexity Low_complexity 1 32 0 2303 68 0 13 chr6 76162032 76162339 -113117215 - AluY SINE Alu 0 311 9 27 0 0 0 chr6 76162393 76162420 -113117134 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr6 76163806 76163827 -113115727 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr6 76164006 76164044 -113115510 + AT_rich Low_complexity Low_complexity 1 38 0 181 366 32 21 chr6 76164476 76164569 -113114985 - MIR SINE MIR -164 98 5 180 0 0 0 chr6 76165434 76165454 -113114100 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 877 188 51 30 chr6 76165454 76165651 -113113903 - MER6B DNA MER2_type -8 202 2 261 279 93 36 chr6 76167608 76167748 -113111806 - MIR SINE MIR 0 262 115 394 275 110 0 chr6 76167796 76167905 -113111649 - MIR SINE MIR -128 134 14 24 53 0 0 chr6 76169179 76169217 -113110337 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr6 76169702 76169732 -113109822 + AT_rich Low_complexity Low_complexity 1 30 0 319 71 0 0 chr6 76169944 76169986 -113109568 - L1MC/D LINE L1 -594 6157 6116 501 129 8 144 chr6 76169999 76170131 -113109423 + L1MC/D LINE L1 5589 5702 -631 1837 214 63 76 chr6 76170168 76170771 -113108783 - L1MC3 LINE L1 -22 7763 7169 * 7474 251 68 22 chr6 76170766 76174053 -113105501 - L1MC/D LINE L1 -743 5821 2606 3211 230 72 41 chr6 76174093 76174235 -113105319 - L1MCb LINE L1 -4096 2468 2332 1476 199 40 10 chr6 76174235 76174536 -113105018 - AluJo SINE Alu 0 312 3 3211 230 72 41 chr6 76174536 76175380 -113104174 - L1MCb LINE L1 -4232 2332 1515 180 0 0 0 chr6 76175380 76175400 -113104154 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 3211 230 72 41 chr6 76175400 76176159 -113103395 - L1MCb LINE L1 -5049 1515 575 2202 88 37 3 chr6 76176159 76176455 -113103099 + AluY SINE Alu 2 307 -4 3211 230 72 41 chr6 76176455 76176781 -113102773 - L1MCb LINE L1 -5989 575 260 867 243 69 9 chr6 76177069 76177496 -113102058 - L1M1 LINE L1 -619 5547 5126 828 283 79 62 chr6 76177516 76177787 -113101767 - HAL1 LINE L1 -538 1969 1704 3475 12 15 0 chr6 76177787 76178197 -113101357 - L1PA3 LINE L1 0 6155 5740 828 283 79 62 chr6 76178197 76178522 -113101032 - HAL1 LINE L1 -803 1704 1363 234 0 0 0 chr6 76179108 76179134 -113100420 + (TG)n Simple_repeat Simple_repeat 1 26 0 191 36 36 0 chr6 76179134 76179162 -113100392 + (GA)n Simple_repeat Simple_repeat 2 30 0 267 333 23 82 chr6 76179340 76179440 -113100114 - MIR SINE MIR -68 194 107 1733 153 0 94 chr6 76179440 76179779 -113099775 + AluSx SINE Alu 4 310 -2 267 333 23 82 chr6 76179779 76179849 -113099705 - MIR SINE MIR -155 107 34 2347 73 10 13 chr6 76179977 76180280 -113099274 + AluY SINE Alu 1 302 -9 21633 35 0 0 chr6 76180315 76183718 -113095836 + L1PA3 LINE L1 2747 6152 -3 227 192 19 19 chr6 76183827 76183879 -113095675 + GA-rich Low_complexity Low_complexity 3 54 0 207 293 110 0 chr6 76183886 76183968 -113095586 + MIR SINE MIR 165 255 -7 204 179 0 0 chr6 76183935 76183974 -113095580 + L2 LINE L2 3227 3265 -7 * 325 286 68 23 chr6 76184372 76184505 -113095049 - MIR SINE MIR -14 248 110 21 0 0 0 chr6 76185040 76185061 -113094493 + AT_rich Low_complexity Low_complexity 1 21 0 638 283 52 24 chr6 76185775 76185987 -113093567 - MIR SINE MIR -38 224 7 281 207 0 35 chr6 76186362 76186420 -113093134 + L2 LINE L2 3190 3245 -68 2204 80 117 0 chr6 76186436 76186760 -113092794 - THE1B LTR MaLR 0 364 3 784 261 112 20 chr6 76186840 76187049 -113092505 + LTR37A LTR ERV1 46 234 -192 201 39 0 0 chr6 76187049 76187075 -113092479 + (TG)n Simple_repeat Simple_repeat 1 26 0 784 261 112 20 chr6 76187075 76187214 -113092340 + LTR37A LTR ERV1 234 426 0 21 104 0 0 chr6 76187254 76187331 -113092223 + AT_rich Low_complexity Low_complexity 1 77 0 207 0 0 0 chr6 76187453 76187476 -113092078 + (TA)n Simple_repeat Simple_repeat 2 24 0 1413 142 0 35 chr6 76187476 76187702 -113091852 - AluJb SINE Alu -6 306 89 319 171 12 12 chr6 76188374 76188456 -113091098 + (TA)n Simple_repeat Simple_repeat 2 83 0 408 314 93 34 chr6 76189012 76189248 -113090306 + MIR SINE MIR 13 262 0 226 400 0 11 chr6 76189577 76189667 -113089887 + L2 LINE L2 3210 3298 -15 634 195 0 16 chr6 76190091 76190214 -113089340 + FLAM_C SINE Alu 7 127 -16 372 243 63 0 chr6 76190942 76191053 -113088501 + L1MA8 LINE L1 6171 6288 -3 1522 181 11 0 chr6 76191090 76191440 -113088114 + L1MA9 LINE L1 5789 6277 -35 23 68 0 0 chr6 76191440 76191484 -113088070 + AT_rich Low_complexity Low_complexity 1 44 0 5724 183 42 49 chr6 76191595 76191646 -113087908 - ERVL LTR ERVL -644 5120 5070 2154 110 0 3 chr6 76191646 76191938 -113087616 - AluSx SINE Alu -21 291 1 5724 183 42 49 chr6 76191938 76192822 -113086732 - ERVL LTR ERVL -694 5070 4192 704 49 10 20 chr6 76192822 76192924 -113086630 - L1PA8 LINE L1 0 6172 6072 5724 183 42 49 chr6 76192924 76193218 -113086336 - ERVL LTR ERVL -1572 4192 3898 385 356 22 18 chr6 76193435 76193660 -113085894 + ERVL LTR ERVL 2581 2806 -2958 933 224 109 46 chr6 76193705 76194071 -113085483 - MSTC LTR MaLR 0 428 1 2235 68 0 4 chr6 76194302 76194583 -113084971 + AluY SINE Alu 13 292 -19 338 341 49 29 chr6 76195023 76195228 -113084326 + ERVL LTR ERVL 3608 3816 -1948 536 354 85 17 chr6 76195278 76195739 -113083815 + ERVL LTR ERVL 4067 4558 -1096 1014 208 96 30 chr6 76196170 76196502 -113083052 + MSTD LTR MaLR 1 396 0 1660 189 31 31 chr6 76197404 76197764 -113081790 + MLT1A1 LTR MaLR 4 363 -2 259 306 14 0 chr6 76198004 76198076 -113081478 + L1MC/D LINE L1 5552 5624 -2184 707 244 81 14 chr6 76198084 76198293 -113081261 + MER58A DNA MER1_type 2 224 0 185 268 0 0 chr6 76198448 76198489 -113081065 + MIR SINE MIR 86 126 -136 327 95 0 0 chr6 76200626 76200668 -113078886 + L1P2 LINE L1 5525 5566 -588 35 78 0 0 chr6 76200757 76200834 -113078720 + AT_rich Low_complexity Low_complexity 1 77 0 3041 75 0 2 chr6 76200919 76201331 -113078223 + L1P LINE L1 3309 3719 -2427 1434 229 43 0 chr6 76201332 76201633 -113077921 + MLT1A1 LTR MaLR 52 365 0 2830 210 28 11 chr6 76201633 76202205 -113077349 + MER89-int LTR ERV1 6220 6801 0 1898 179 50 4 chr6 76202208 76202644 -113076910 + MER89 LTR ERV1 4 559 0 1825 209 40 86 chr6 76202771 76203014 -113076540 - MLT2B1 LTR ERVL 0 520 267 2702 99 0 3 chr6 76203014 76203379 -113076175 + THE1B LTR MaLR 1 364 0 1825 209 40 86 chr6 76203379 76203680 -113075874 - MLT2B1 LTR ERVL -253 267 1 620 349 34 32 chr6 76203882 76204318 -113075236 - L2 LINE L2 -1048 2266 1830 549 250 5 46 chr6 76204539 76204735 -113074819 + L1M4 LINE L1 4504 4691 -1455 2433 84 0 0 chr6 76204790 76205122 -113074432 + L1PA7 LINE L1 5819 6150 -4 614 265 88 25 chr6 76205679 76205917 -113073637 + MIR SINE MIR 3 255 -7 274 260 0 14 chr6 76206194 76206267 -113073287 - MIR SINE MIR -16 246 175 420 336 118 9 chr6 76206459 76206688 -113072866 + L2 LINE L2 2684 2937 -377 189 299 30 15 chr6 76207907 76207974 -113071580 - MIR3 SINE MIR -139 69 2 2165 92 0 20 chr6 76208403 76208698 -113070856 + AluSx SINE Alu 1 289 -23 333 0 0 0 chr6 76210240 76210277 -113069277 + (TG)n Simple_repeat Simple_repeat 2 38 0 1755 153 45 0 chr6 76210776 76211064 -113068490 - AluSg SINE Alu -3 307 7 380 144 45 8 chr6 76211132 76211264 -113068290 + (TA)n Simple_repeat Simple_repeat 2 138 0 276 148 0 0 chr6 76211756 76211768 -113067786 + (GA)n Simple_repeat Simple_repeat 1 12 -42 261 0 0 0 chr6 76211768 76211797 -113067757 + (TG)n Simple_repeat Simple_repeat 1 29 0 276 148 0 0 chr6 76211797 76211838 -113067716 + (GA)n Simple_repeat Simple_repeat 11 54 0 189 0 0 0 chr6 76211866 76211887 -113067667 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1741 127 46 11 chr6 76212154 76212467 -113067087 + THE1C LTR MaLR 1 373 -2 315 216 0 7 chr6 76212935 76213006 -113066548 - AluJ/monomer SINE Alu -249 53 1 28 0 0 0 chr6 76213753 76213781 -113065773 + AT_rich Low_complexity Low_complexity 1 28 0 1301 207 11 35 chr6 76213782 76214067 -113065487 - AluJb SINE Alu -8 304 27 22 0 0 0 chr6 76214083 76214105 -113065449 + AT_rich Low_complexity Low_complexity 1 22 0 354 256 66 0 chr6 76214144 76214265 -113065289 - LTR37A LTR ERV1 -9 417 289 21 0 0 0 chr6 76214309 76214330 -113065224 + AT_rich Low_complexity Low_complexity 1 21 0 1808 155 37 0 chr6 76214340 76214637 -113064917 - AluSx SINE Alu -4 308 1 249 262 135 8 chr6 76215012 76215138 -113064416 - L1ME LINE L1 -268 5853 5712 22 0 0 0 chr6 76215177 76215199 -113064355 + AT_rich Low_complexity Low_complexity 1 22 0 1387 189 99 3 chr6 76215548 76215850 -113063704 + MER92B LTR ERV1 1 331 -305 1609 162 91 0 chr6 76216648 76216957 -113062597 - MER1B DNA MER1_type 0 337 1 343 297 101 7 chr6 76217157 76217305 -113062249 + MER58A DNA MER1_type 1 162 0 634 340 62 4 chr6 76217318 76217562 -113061992 + MER45C DNA AcHobo 2 259 -694 369 0 0 0 chr6 76217911 76217952 -113061602 + (T)n Simple_repeat Simple_repeat 1 41 0 6415 7 0 0 chr6 76218106 76218825 -113060729 - L1HS LINE L1 -2 6153 5435 * 8748 22 0 1 chr6 76218808 76219904 -113059650 + L1P1 LINE L1 4357 5451 -704 21 0 0 0 chr6 76220230 76220251 -113059303 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 76221631 76221658 -113057896 + AT_rich Low_complexity Low_complexity 1 27 0 960 251 118 12 chr6 76221679 76222002 -113057552 + MLT1A1 LTR MaLR 1 357 -8 21 82 0 0 chr6 76223239 76223288 -113056266 + AT_rich Low_complexity Low_complexity 1 49 0 780 197 133 57 chr6 76223508 76223808 -113055746 + MER33 DNA MER1_type 2 324 0 691 193 0 0 chr6 76223956 76224070 -113055484 + FLAM_A SINE Alu 1 114 -19 249 33 0 0 chr6 76224154 76224184 -113055370 + (TG)n Simple_repeat Simple_repeat 1 30 0 272 317 99 21 chr6 76224198 76224340 -113055214 - MIR SINE MIR -18 244 92 5371 192 126 53 chr6 76224882 76226322 -113053232 - MER52A LTR ERV1 0 1755 211 384 282 10 10 chr6 76226305 76226408 -113053146 - MER52A LTR ERV1 -1652 103 1 * 217 376 54 0 chr6 76226601 76226694 -113052860 + MIR3 SINE MIR 64 161 -47 1596 176 12 50 chr6 76226852 76227175 -113052379 + AluSx SINE Alu 1 311 -1 28 29 0 0 chr6 76227950 76227985 -113051569 + AT_rich Low_complexity Low_complexity 1 35 0 389 111 33 56 chr6 76227985 76228165 -113051389 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 193 308 87 10 chr6 76228574 76228678 -113050876 - MER5B DNA MER1_type -66 112 1 749 224 97 0 chr6 76229312 76229540 -113050014 + Charlie2 DNA MER1_type 2612 2861 -1 22 88 0 0 chr6 76229610 76229667 -113049887 + AT_rich Low_complexity Low_complexity 1 57 0 25 90 0 0 chr6 76229763 76229830 -113049724 + AT_rich Low_complexity Low_complexity 1 67 0 374 341 28 40 chr6 76230789 76230965 -113048589 - MIR3 SINE MIR -3 205 32 30 59 0 0 chr6 76231151 76231202 -113048352 + AT_rich Low_complexity Low_complexity 1 51 0 693 286 150 74 chr6 76231473 76231616 -113047938 + MER50 LTR ERV1 2 133 -601 8037 89 10 17 chr6 76231616 76232731 -113046823 + L1PA7 LINE L1 4210 5318 -836 2820 10 0 0 chr6 76232731 76233042 -113046512 + AluYa5 SINE Alu 1 311 0 8037 89 10 17 chr6 76233042 76233874 -113045680 + L1PA7 LINE L1 5318 6154 0 693 286 150 74 chr6 76233874 76234390 -113045164 + MER50 LTR ERV1 133 711 -23 241 286 12 14 chr6 76234442 76234526 -113045028 + MIR SINE MIR 69 151 -57 313 210 0 12 chr6 76234526 76234607 -113044947 + MSTC LTR MaLR 243 356 -72 227 122 20 0 chr6 76234604 76234653 -113044901 - LTR66 LTR ERVL -167 443 394 * 25 31 0 0 chr6 76234653 76234685 -113044869 + AT_rich Low_complexity Low_complexity 1 32 0 33 43 0 0 chr6 76234773 76234820 -113044734 + AT_rich Low_complexity Low_complexity 1 47 0 456 223 46 113 chr6 76234884 76235167 -113044387 + LTR37B LTR ERV1 29 292 -176 2758 152 58 61 chr6 76235251 76235875 -113043679 + LTR29 LTR ERV1 1 622 0 866 142 25 98 chr6 76236213 76236389 -113043165 + LTR8A LTR ERV1 1 161 -530 1900 113 10 8 chr6 76236389 76236780 -113042774 + LTR7 LTR ERV1 1 442 -8 2580 171 14 68 chr6 76236789 76237346 -113042208 + LTR8 LTR ERV1 165 691 0 26 30 0 0 chr6 76237488 76237521 -113042033 + AT_rich Low_complexity Low_complexity 1 33 0 263 271 0 0 chr6 76238344 76238403 -113041151 + MER82 DNA MER2_type 1 59 -594 2382 202 58 31 chr6 76238451 76239006 -113040548 - MER34C LTR ERV1 -8 577 8 366 301 51 0 chr6 76239151 76239347 -113040207 + L1M4 LINE L1 4462 4667 -1479 468 335 131 3 chr6 76239505 76239857 -113039697 + L1M4 LINE L1 4842 5238 -908 336 250 0 0 chr6 76239938 76239998 -113039556 + Tigger3(Golem) DNA MER2_type 1 60 -2969 734 221 0 20 chr6 76239999 76240148 -113039406 + Tigger3(Golem) DNA MER2_type 2879 3024 -5 467 280 0 0 chr6 76241622 76241754 -113037800 + L1MA8 LINE L1 2222 2353 -4496 12933 191 26 27 chr6 76241762 76242412 -113037142 + L1MA8 LINE L1 2950 3599 -3394 1623 167 14 31 chr6 76242412 76242729 -113036825 + AluSx SINE Alu 1 312 0 12933 191 26 27 chr6 76242729 76246108 -113033446 + L1MA8 LINE L1 3599 6988 -5 1392 219 38 51 chr6 76246806 76247198 -113032356 - MLT1B LTR MaLR 0 390 4 1928 125 0 28 chr6 76249279 76249605 -113029949 + AluSg SINE Alu 1 318 0 25 31 0 0 chr6 76250416 76250448 -113029106 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 76251332 76251354 -113028200 + AT_rich Low_complexity Low_complexity 1 22 0 480 204 177 66 chr6 76251600 76251781 -113027773 + MER20 DNA MER1_type 18 218 -1 29 0 0 0 chr6 76252255 76252284 -113027270 + AT_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr6 76252819 76252874 -113026680 + AT_rich Low_complexity Low_complexity 1 55 0 485 127 0 0 chr6 76253280 76253359 -113026195 + MADE1 DNA Mariner 1 79 -1 2260 143 11 3 chr6 76254658 76255029 -113024525 + THE1C LTR MaLR 1 374 -1 252 263 119 38 chr6 76255317 76255477 -113024077 + L3b LINE CR1 1240 1412 -171 24 77 0 0 chr6 76257057 76257109 -113022445 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr6 76257317 76257345 -113022209 + AT_rich Low_complexity Low_complexity 1 28 0 263 309 8 65 chr6 76257530 76257653 -113021901 + MLT1I LTR MaLR 141 256 -153 706 150 23 23 chr6 76257704 76257717 -113021837 - FRAM SINE Alu -148 164 152 4619 151 24 14 chr6 76257717 76258584 -113020970 - L1MA6 LINE L1 -4 6296 5421 706 150 23 23 chr6 76258584 76258703 -113020851 - FRAM SINE Alu -159 153 32 264 149 0 0 chr6 76258722 76258769 -113020785 + (TG)n Simple_repeat Simple_repeat 2 48 0 245 360 103 37 chr6 76259030 76259380 -113020174 + L2 LINE L2 2938 3310 -3 315 315 46 8 chr6 76259884 76260014 -113019540 - MIR SINE MIR -21 241 107 331 327 73 20 chr6 76260828 76260978 -113018576 - MER5B DNA MER1_type -19 159 2 428 277 0 39 chr6 76261283 76261413 -113018141 - MIR SINE MIR -104 158 34 219 114 0 0 chr6 76261491 76261526 -113018028 + (TTA)n Simple_repeat Simple_repeat 2 36 0 259 222 0 154 chr6 76261526 76261643 -113017911 - MIR SINE MIR -16 246 148 4167 46 6 0 chr6 76261931 76262456 -113017098 - L1P LINE L1 -886 5260 4733 3175 50 0 2 chr6 76262456 76262853 -113016701 + L1PA5 LINE L1 5756 6154 0 401 287 90 0 chr6 76262868 76262990 -113016564 + MIR SINE MIR 86 218 -44 798 251 82 139 chr6 76263187 76263713 -113015841 + MLT1F1 LTR MaLR 70 565 -2 325 235 121 40 chr6 76264511 76264660 -113014894 + MER103 DNA DNA 3 163 -3 254 316 43 26 chr6 76264757 76264874 -113014680 + L2 LINE L2 3154 3272 0 1638 191 4 0 chr6 76265190 76265468 -113014086 + AluJb SINE Alu 1 279 -33 221 0 0 33 chr6 76265468 76265498 -113014056 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 685 292 42 14 chr6 76266121 76266337 -113013217 + MIR SINE MIR 11 232 -30 904 224 6 6 chr6 76266371 76266545 -113013009 + MER8 DNA MER2_type 1 174 -65 424 156 13 13 chr6 76266583 76266660 -113012894 - Tigger2 DNA MER2_type -2641 77 1 359 316 9 9 chr6 76269877 76269991 -113009563 - L2 LINE L2 0 3313 3200 200 349 35 12 chr6 76270529 76270615 -113008939 - L2 LINE L2 -83 3189 3102 381 189 33 0 chr6 76271889 76271979 -113007575 + L1ME2 LINE L1 6062 6154 -10 1761 164 3 7 chr6 76272214 76272506 -113007048 - AluJo SINE Alu -11 301 11 25 31 0 0 chr6 76272704 76272736 -113006818 + AT_rich Low_complexity Low_complexity 1 32 0 271 317 77 22 chr6 76272788 76272971 -113006583 + L1ME LINE L1 5499 5691 -430 22 35 0 0 chr6 76273044 76273073 -113006481 + AT_rich Low_complexity Low_complexity 1 29 0 242 224 17 0 chr6 76273161 76273219 -113006335 + (TATG)n Simple_repeat Simple_repeat 2 60 0 6456 138 34 55 chr6 76275440 76276690 -113002864 - Tigger3b DNA MER2_type -7 1224 1 23 0 0 0 chr6 76276747 76276770 -113002784 + AT_rich Low_complexity Low_complexity 1 23 0 1196 220 8 34 chr6 76277310 76277578 -113001976 - AluJo SINE Alu -51 261 1 25 31 0 0 chr6 76278920 76278952 -113000602 + AT_rich Low_complexity Low_complexity 1 32 0 631 287 0 17 chr6 76279075 76279256 -113000298 - MER5B DNA MER1_type 0 178 1 24 0 0 0 chr6 76279452 76279476 -113000078 + AT_rich Low_complexity Low_complexity 1 24 0 302 97 14 42 chr6 76279568 76279640 -112999914 + (TA)n Simple_repeat Simple_repeat 1 70 0 23 0 0 0 chr6 76280647 76280670 -112998884 + AT_rich Low_complexity Low_complexity 1 23 0 304 143 0 26 chr6 76282750 76282827 -112996727 + (TA)n Simple_repeat Simple_repeat 1 75 0 24 32 0 0 chr6 76282887 76282918 -112996636 + AT_rich Low_complexity Low_complexity 1 31 0 2409 87 0 0 chr6 76283024 76283335 -112996219 + AluY SINE Alu 1 311 0 26 0 0 0 chr6 76283465 76283491 -112996063 + AT_rich Low_complexity Low_complexity 1 26 0 2276 98 0 0 chr6 76283877 76284174 -112995380 + AluSc SINE Alu 1 297 -12 25 0 8 0 chr6 76284862 76284927 -112994627 + AT_rich Low_complexity Low_complexity 1 25 0 28437 34 1 1 chr6 76284927 76289173 -112990381 - L1PA3 LINE L1 -4 6151 1905 21 57 0 0 chr6 76289808 76289843 -112989711 + AT_rich Low_complexity Low_complexity 1 35 0 1336 240 10 3 chr6 76290124 76290428 -112989126 - AluJb SINE Alu -4 308 3 22 0 0 0 chr6 76290688 76290710 -112988844 + AT_rich Low_complexity Low_complexity 1 22 0 195 383 49 0 chr6 76291076 76291157 -112988397 + MIR SINE MIR 165 249 -13 213 175 0 0 chr6 76291371 76291411 -112988143 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 545 286 80 5 chr6 76291644 76291843 -112987711 + MLT1E2 LTR MaLR 1 214 -412 1924 168 45 41 chr6 76291844 76292392 -112987162 + MLT2A2 LTR ERVL 1 554 0 1154 283 32 12 chr6 76292449 76292788 -112986766 + MLT1E2 LTR MaLR 281 626 0 192 77 0 0 chr6 76294143 76294169 -112985385 + (TAA)n Simple_repeat Simple_repeat 1 26 0 405 113 21 41 chr6 76294336 76294433 -112985121 + CT-rich Low_complexity Low_complexity 2 96 0 3902 143 23 92 chr6 76294712 76296239 -112983315 + pTR5 LTR ERV1 738 2606 0 1004 121 24 12 chr6 76296679 76296844 -112982710 + LTR26B LTR ERV1 1 167 -364 6638 83 3 16 chr6 76296944 76297042 -112982512 - L1PA7 LINE L1 -21 6133 6035 7165 43 29 1 chr6 76297042 76297915 -112981639 - MER11D LTR ERVK 0 897 1 6638 83 3 16 chr6 76297915 76299194 -112980360 - L1PA7 LINE L1 -119 6035 4773 1554 167 82 15 chr6 76299194 76299536 -112980018 + L1PB4 LINE L1 5678 6042 -114 749 213 0 10 chr6 76299642 76299844 -112979710 - L1 LINE L1 -1592 4554 4355 1089 212 8 12 chr6 76299848 76300107 -112979447 - L1 LINE L1 -2161 3985 3728 * 2633 187 38 83 chr6 76300106 76301348 -112978206 + L1PB4 LINE L1 4920 6154 -2 749 352 154 15 chr6 76301690 76302372 -112977182 + L2 LINE L2 917 1693 -1621 198 118 0 0 chr6 76302383 76302417 -112977137 + (TA)n Simple_repeat Simple_repeat 1 34 0 310 160 53 96 chr6 76302427 76302521 -112977033 - L1MC4 LINE L1 -1339 6703 6614 200 152 43 0 chr6 76303275 76303321 -112976233 + CT-rich Low_complexity Low_complexity 2 49 0 231 114 0 0 chr6 76303523 76303558 -112975996 + (T)n Simple_repeat Simple_repeat 1 35 0 1237 102 0 48 chr6 76304229 76304415 -112975139 + AluSp SINE Alu 130 306 -7 275 345 0 0 chr6 76304726 76304813 -112974741 + MIR SINE MIR 15 101 -161 28 29 0 0 chr6 76305027 76305062 -112974492 + AT_rich Low_complexity Low_complexity 1 35 0 382 105 0 26 chr6 76305494 76305570 -112973984 + (TA)n Simple_repeat Simple_repeat 1 74 0 586 263 125 60 chr6 76305581 76305760 -112973794 + L2 LINE L2 1721 1887 -1427 1858 127 0 80 chr6 76305760 76306074 -112973480 + AluSx SINE Alu 5 293 -19 586 263 125 60 chr6 76306074 76306213 -112973341 + L2 LINE L2 1887 2060 -1254 198 355 0 0 chr6 76306346 76306422 -112973132 - MIR SINE MIR -74 188 113 270 357 10 0 chr6 76306459 76306557 -112972997 + L2 LINE L2 2238 2336 -978 1719 245 95 19 chr6 76306572 76306645 -112972909 + MLT1D LTR MaLR 1 67 -438 2063 145 103 5 chr6 76306645 76307032 -112972522 + MSTA LTR MaLR 2 426 -2 1719 245 95 19 chr6 76307032 76307420 -112972134 + MLT1D LTR MaLR 67 497 -8 342 0 0 0 chr6 76308181 76308219 -112971335 + (T)n Simple_repeat Simple_repeat 1 38 0 5658 178 9 25 chr6 76308324 76309466 -112970088 + L1P LINE L1 3291 4413 -1733 5236 108 0 0 chr6 76309459 76310247 -112969307 + L1P LINE L1 2762 3549 -2597 * 861 269 30 55 chr6 76311455 76311753 -112967801 + MLT1A1 LTR MaLR 11 337 -59 407 369 127 15 chr6 76311831 76312162 -112967392 + L2 LINE L2 2867 3234 -38 349 362 82 4 chr6 76312273 76312505 -112967049 - MIR SINE MIR -1 261 12 322 282 51 26 chr6 76315164 76315281 -112964273 - MLT1J1 LTR MaLR -265 181 62 27 49 0 0 chr6 76316940 76316981 -112962573 + AT_rich Low_complexity Low_complexity 1 41 0 1316 232 61 25 chr6 76317483 76317958 -112961596 - L1M4 LINE L1 -2898 3248 2757 8168 223 23 100 chr6 76317965 76322344 -112957210 + L1PA12 LINE L1 10 4057 -3527 1025 91 7 14 chr6 76322445 76322588 -112956966 - AluSq/x SINE Alu -170 142 1 203 283 236 9 chr6 76323821 76323927 -112955627 - L2 LINE L2 0 3313 3184 189 74 0 0 chr6 76323933 76323960 -112955594 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 840 231 28 14 chr6 76324291 76324503 -112955051 + MIR SINE MIR 13 227 -35 369 43 0 0 chr6 76324505 76324552 -112955002 + (TG)n Simple_repeat Simple_repeat 2 48 0 6942 58 5 5 chr6 76324906 76326124 -112953430 + L1PA7 LINE L1 4930 6147 -7 245 366 98 0 chr6 76326137 76326260 -112953294 - L2 LINE L2 0 3313 3179 1262 193 56 129 chr6 76326358 76326891 -112952663 + MER67D LTR ERV1 1 494 -20 2107 134 7 0 chr6 76329132 76329424 -112950130 - AluSx SINE Alu -16 296 3 4745 98 5 45 chr6 76330661 76331408 -112948146 + L1PA13 LINE L1 5439 6155 -8 21 0 0 0 chr6 76331408 76331429 -112948125 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr6 76331810 76331842 -112947712 + (TG)n Simple_repeat Simple_repeat 2 33 0 1868 156 40 35 chr6 76332926 76333299 -112946255 - THE1C LTR MaLR 0 375 1 3237 132 36 10 chr6 76333348 76333932 -112945622 - Tigger3(Golem) DNA MER2_type -154 2875 2277 410 191 0 0 chr6 76333923 76333991 -112945563 - Tigger3(Golem) DNA MER2_type -2921 108 41 * 3155 112 11 4 chr6 76334093 76334549 -112945005 - THE1C-int LTR MaLR -131 1449 991 3211 180 73 74 chr6 76334549 76335305 -112944249 + MER21A LTR ERV1 148 902 -29 210 222 0 0 chr6 76335332 76335368 -112944186 + (TG)n Simple_repeat Simple_repeat 2 37 0 300 347 7 14 chr6 76335393 76335537 -112944017 + L1MC4 LINE L1 6561 6703 -1339 275 75 25 0 chr6 76335553 76335593 -112943961 + MLT2B2 LTR ERVL 475 515 0 631 225 31 6 chr6 76335621 76335781 -112943773 - L1ME1 LINE L1 -5 6161 5998 250 154 0 19 chr6 76335781 76335833 -112943721 - L1MC3 LINE L1 -1818 5967 5917 1729 181 24 51 chr6 76336163 76336534 -112943020 + MLT1A1 LTR MaLR 1 361 -4 754 168 8 0 chr6 76336870 76336995 -112942559 + AluJb SINE Alu 1 126 -186 208 390 0 0 chr6 76337374 76337456 -112942098 - MIR SINE MIR -133 129 48 270 0 0 0 chr6 76338116 76338146 -112941408 + (TG)n Simple_repeat Simple_repeat 2 31 0 182 237 53 0 chr6 76338300 76338338 -112941216 - L2 LINE L2 -2084 1230 1191 336 371 129 0 chr6 76338411 76338597 -112940957 - MIR SINE MIR -52 210 1 798 302 153 28 chr6 76339416 76339879 -112939675 + L2 LINE L2 1954 2474 -840 * 1044 329 80 39 chr6 76339875 76340640 -112938914 - L2 LINE L2 0 3313 2535 3908 217 85 25 chr6 76340641 76341744 -112937810 - L1PA16 LINE L1 0 6166 5001 905 302 62 25 chr6 76341759 76342163 -112937391 + L2 LINE L2 2476 2894 -420 1956 142 0 25 chr6 76342290 76342606 -112936948 + AluSx SINE Alu 1 308 -4 273 194 10 39 chr6 76342629 76342732 -112936822 + G-rich Low_complexity Low_complexity 2 101 0 461 148 0 82 chr6 76342762 76342958 -112936596 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 262 217 16 39 chr6 76342927 76343056 -112936498 + GA-rich Low_complexity Low_complexity 2 127 0 * 224 174 0 65 chr6 76343102 76343194 -112936360 + GA-rich Low_complexity Low_complexity 4 89 0 25 31 0 0 chr6 76343417 76343449 -112936105 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 76343515 76343537 -112936017 + AT_rich Low_complexity Low_complexity 1 22 0 218 250 0 28 chr6 76345621 76345693 -112933861 + (TA)n Simple_repeat Simple_repeat 2 71 0 337 394 62 4 chr6 76347423 76347664 -112931890 + MIR SINE MIR 7 261 -1 41 48 0 0 chr6 76348099 76348161 -112931393 + AT_rich Low_complexity Low_complexity 1 62 0 197 183 17 0 chr6 76348393 76348453 -112931101 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 245 163 143 0 chr6 76348468 76348517 -112931037 - MLT2D LTR ERVL 0 464 409 1955 183 16 22 chr6 76348559 76348925 -112930629 - MLT2D LTR ERVL -48 366 3 255 114 0 0 chr6 76348930 76348974 -112930580 + (CA)n Simple_repeat Simple_repeat 1 44 0 1678 178 0 3 chr6 76349009 76349333 -112930221 - AluSx SINE Alu 0 323 1 355 355 97 11 chr6 76349937 76350216 -112929338 - L2 LINE L2 0 3313 3011 207 233 33 67 chr6 76350247 76350337 -112929217 - L2 LINE L2 -607 2707 2621 265 299 19 39 chr6 76350375 76350529 -112929025 - L1P LINE L1 -1099 5047 4897 24 0 0 0 chr6 76350530 76350554 -112929000 + AT_rich Low_complexity Low_complexity 1 24 0 296 294 69 0 chr6 76350692 76350847 -112928707 + L1ME LINE L1 5727 5892 -272 368 337 12 25 chr6 76351359 76351522 -112928032 + L2 LINE L2 2495 2655 -659 2424 65 0 3 chr6 76351602 76351909 -112927645 - AluY SINE Alu -5 306 1 2098 32 0 4 chr6 76352151 76352399 -112927155 - AluY SINE Alu -64 247 1 180 403 13 34 chr6 76352725 76352874 -112926680 + L2 LINE L2 3167 3312 -1 21 0 0 0 chr6 76353082 76353103 -112926451 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 76355050 76355071 -112924483 + AT_rich Low_complexity Low_complexity 1 21 0 1061 162 0 38 chr6 76356537 76356722 -112922832 + LTR26B LTR ERV1 354 531 0 274 330 57 48 chr6 76358081 76358308 -112921246 + MLT1I LTR MaLR 1 229 -180 286 392 49 20 chr6 76358427 76358631 -112920923 + L2 LINE L2 2515 2724 -590 206 331 24 40 chr6 76358687 76358811 -112920743 - L2 LINE L2 -2569 745 624 299 285 63 76 chr6 76358836 76358994 -112920560 - MIR SINE MIR -69 193 38 360 218 0 0 chr6 76359292 76359370 -112920184 + L1PB4 LINE L1 6077 6154 -2 280 358 42 39 chr6 76359668 76359847 -112919707 - MIR3 SINE MIR -6 202 22 499 235 17 84 chr6 76360314 76360493 -112919061 - MIR SINE MIR -34 228 62 825 259 37 0 chr6 76360644 76360860 -112918694 + MER58A DNA MER1_type 1 224 0 24 0 0 0 chr6 76361229 76361253 -112918301 + AT_rich Low_complexity Low_complexity 1 24 0 844 303 197 5 chr6 76361315 76361685 -112917869 + L2 LINE L2 2107 2547 -767 821 195 76 59 chr6 76361720 76361956 -112917598 + HUERS-P1 LTR ERV1 5914 6153 -178 * 907 278 4 34 chr6 76361954 76362220 -112917334 + HUERS-P1 LTR ERV1 5998 6255 -8 853 92 106 21 chr6 76362227 76362369 -112917185 + LTR8A LTR ERV1 1 154 -573 800 172 0 0 chr6 76362383 76362511 -112917043 - FLAM_C SINE Alu -11 132 5 1769 191 221 14 chr6 76362523 76363006 -112916548 + LTR8A LTR ERV1 143 725 -2 643 335 25 56 chr6 76363008 76363451 -112916103 + L2 LINE L2 2644 3073 -240 180 0 0 0 chr6 76363493 76363513 -112916041 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 1178 212 13 59 chr6 76363717 76364023 -112915531 - AluJb SINE Alu -10 292 1 24 0 0 0 chr6 76364217 76364241 -112915313 + AT_rich Low_complexity Low_complexity 1 24 0 6622 183 102 31 chr6 76364268 76365827 -112913727 + MER52A LTR ERV1 1 1755 0 351 289 70 96 chr6 76367407 76367794 -112911760 - L1MEc LINE L1 -4724 1672 1296 1549 311 71 14 chr6 76367950 76368539 -112911015 + MLT2E LTR ERVL 1 623 -5 22 0 0 0 chr6 76368623 76368645 -112910909 + AT_rich Low_complexity Low_complexity 1 22 0 314 342 17 17 chr6 76368921 76369041 -112910513 + L2 LINE L2 3189 3308 -5 282 258 67 22 chr6 76369247 76369336 -112910218 - L1MEc LINE L1 -5448 757 665 1170 147 10 0 chr6 76369801 76369998 -112909556 + L1PB1 LINE L1 3 201 -6662 8969 99 86 6 chr6 76369998 76371986 -112907568 + L1PB1 LINE L1 635 2880 -3983 11428 190 15 12 chr6 76371990 76375217 -112904337 + L1PB1 LINE L1 3256 6507 -360 333 0 0 0 chr6 76375217 76375254 -112904300 + (TG)n Simple_repeat Simple_repeat 2 38 0 11428 190 15 12 chr6 76375254 76375617 -112903937 + L1PB1 LINE L1 6507 6867 0 2151 99 26 7 chr6 76375767 76376069 -112903485 + AluY SINE Alu 3 310 -1 193 29 29 29 chr6 76376146 76376181 -112903373 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 204 40 0 0 chr6 76376275 76376300 -112903254 + (CA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr6 76376403 76376426 -112903128 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr6 76377948 76377986 -112901568 + AT_rich Low_complexity Low_complexity 1 38 0 206 346 89 35 chr6 76378338 76378595 -112900959 + L2 LINE L2 2214 2484 -830 258 128 0 0 chr6 76378781 76378820 -112900734 + MLT1F LTR MaLR 503 541 -1 601 282 114 42 chr6 76379771 76380188 -112899366 - LTR33A LTR ERVL -20 503 27 216 0 0 0 chr6 76381881 76381905 -112897649 + (A)n Simple_repeat Simple_repeat 1 24 0 24 32 0 0 chr6 76381993 76382024 -112897530 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr6 76382704 76382728 -112896826 + (A)n Simple_repeat Simple_repeat 1 24 0 24 32 0 0 chr6 76382816 76382847 -112896707 + AT_rich Low_complexity Low_complexity 1 31 0 309 253 40 10 chr6 76382957 76383056 -112896498 + MLT1F1 LTR MaLR 36 137 -430 503 228 58 141 chr6 76383057 76383333 -112896221 + L1MC3 LINE L1 7199 7451 -334 1466 96 23 0 chr6 76383436 76383655 -112895899 + Tigger1 DNA MER2_type 1749 1972 -446 * 12752 153 48 21 chr6 76383651 76385913 -112893641 + Tigger1 DNA MER2_type 96 2418 0 1248 215 88 7 chr6 76385915 76386222 -112893332 + L1MC3 LINE L1 7454 7785 0 592 292 41 0 chr6 76387750 76387921 -112891633 - MER45A DNA AcHobo 0 178 1 206 290 87 0 chr6 76389070 76389139 -112890415 - MIR SINE MIR -91 171 97 1268 50 6 0 chr6 76391400 76391582 -112887972 - AluY SINE Alu 0 307 125 2291 80 3 3 chr6 76391585 76391896 -112887658 - AluY SINE Alu 0 311 1 192 333 14 14 chr6 76392348 76392420 -112887134 + MIR SINE MIR 35 106 -156 469 266 42 14 chr6 76393620 76393763 -112885791 + MIR SINE MIR 8 154 -108 221 235 0 0 chr6 76394169 76394237 -112885317 + A-rich Low_complexity Low_complexity 1 68 0 832 389 32 7 chr6 76394417 76395120 -112884434 + L2 LINE L2 2598 3313 0 866 217 50 20 chr6 76395685 76395883 -112883671 + MER58A DNA MER1_type 4 207 -17 240 392 51 11 chr6 76396875 76397051 -112882503 + L2 LINE L2 1135 1317 -1997 287 363 0 0 chr6 76397122 76397213 -112882341 + MIR SINE MIR 63 153 -109 674 224 60 22 chr6 76397632 76397815 -112881739 + LTR33 LTR ERVL 332 521 0 699 355 45 31 chr6 76398872 76399320 -112880234 + L1M3d LINE L1 1 454 -5437 299 328 31 21 chr6 76399445 76399604 -112879950 + L1M3d LINE L1 256 674 -5217 594 284 30 57 chr6 76399737 76400071 -112879483 + L1M3d LINE L1 694 1018 -4873 1987 95 59 6 chr6 76400073 76400456 -112879098 - LTR7 LTR ERV1 -2 448 1 2377 120 13 13 chr6 76400456 76400847 -112878707 - HERVH LTR ERV1 0 7713 7323 2705 119 23 0 chr6 76400876 76401271 -112878283 - HERVH LTR ERV1 -2699 5014 4611 980 259 113 7 chr6 76401274 76401688 -112877866 + L1ME1 LINE L1 1023 1480 -4904 614 100 0 0 chr6 76401693 76401783 -112877771 + AluSg/x SINE Alu 217 306 -3 10505 245 43 40 chr6 76401785 76405249 -112874305 + L1ME1 LINE L1 1550 5029 -1373 2122 158 68 2 chr6 76405249 76405649 -112873905 - MSTB LTR MaLR 0 426 1 10505 245 43 40 chr6 76405649 76406862 -112872692 + L1ME1 LINE L1 5029 6237 -165 2968 198 8 63 chr6 76406324 76407027 -112872527 + L1MB1 LINE L1 5740 6404 0 * 357 227 45 53 chr6 76407218 76407341 -112872213 + MER5A DNA MER1_type 49 182 -7 270 0 0 0 chr6 76407394 76407424 -112872130 + (CA)n Simple_repeat Simple_repeat 1 30 0 495 188 23 165 chr6 76408059 76408120 -112871434 - MER21B LTR ERV1 -77 786 718 204 40 0 0 chr6 76408120 76408145 -112871409 + (CAATT)n Simple_repeat Simple_repeat 2 26 0 495 188 23 165 chr6 76408145 76408277 -112871277 - MER21B LTR ERV1 -145 718 631 333 267 158 33 chr6 76408293 76408413 -112871141 - MER21B LTR ERV1 -668 195 61 388 173 93 24 chr6 76408421 76408519 -112871035 - MER21B LTR ERV1 -139 788 631 * 793 212 95 28 chr6 76408505 76408715 -112870839 - MER21B LTR ERV1 -597 266 1 948 308 23 31 chr6 76408911 76409005 -112870549 - LTR40a LTR ERVL -74 445 352 1648 230 94 6 chr6 76409005 76409474 -112870080 + MER67D LTR ERV1 1 510 -4 948 308 23 31 chr6 76409474 76409733 -112869821 - LTR40a LTR ERVL -167 352 95 28 79 0 0 chr6 76409795 76409858 -112869696 + AT_rich Low_complexity Low_complexity 1 63 0 180 320 165 29 chr6 76409888 76409991 -112869563 - L2 LINE L2 -9 3263 3147 192 340 40 10 chr6 76410241 76410341 -112869213 - L2 LINE L2 -517 2797 2695 681 196 46 0 chr6 76410651 76410804 -112868750 + MER67D LTR ERV1 351 510 -4 1342 118 3 141 chr6 76412001 76412298 -112867256 - L1PA15 LINE L1 -3 6162 5907 573 288 112 71 chr6 76413247 76413542 -112866012 + LTR16A LTR ERVL 16 322 -128 238 254 17 0 chr6 76413822 76413881 -112865673 + (CA)n Simple_repeat Simple_repeat 1 60 0 9739 35 34 1 chr6 76414836 76416462 -112863092 + L1P2 LINE L1 4086 5771 -384 11446 233 27 34 chr6 76466462 76469954 -112809600 + L1PA15 LINE L1 1802 5308 -1489 5304 151 11 6 chr6 76470347 76471845 -112807709 + L1PA15 LINE L1 5304 6813 -3 803 163 0 0 chr6 76472103 76472226 -112807328 - AluSg/x SINE Alu -20 290 168 423 272 99 19 chr6 76472426 76472588 -112806966 + L2 LINE L2 2961 3135 -178 529 264 30 18 chr6 76472588 76472755 -112806799 + MER58B DNA MER1_type 170 338 -3 509 258 6 82 chr6 76472755 76472937 -112806617 + L2 LINE L2 3146 3313 0 6723 114 0 19 chr6 76473009 76474022 -112805532 + L1PA2 LINE L1 5156 6151 -4 23 33 0 0 chr6 76474114 76474144 -112805410 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr6 76474162 76474202 -112805352 + AT_rich Low_complexity Low_complexity 1 40 0 778 308 47 30 chr6 76474826 76475164 -112804390 - LTR16A LTR ERVL -4 446 103 493 293 81 9 chr6 76475559 76475894 -112803660 - L1MCa LINE L1 -3526 3415 3057 795 270 104 44 chr6 76475954 76476629 -112802925 - L1MCa LINE L1 -4832 2109 1395 736 281 66 75 chr6 76476649 76477076 -112802478 - L1MCa LINE L1 -5164 1259 837 235 296 30 45 chr6 76477394 76477526 -112802028 - L1MCa LINE L1 -6046 377 248 492 272 96 57 chr6 76477757 76478058 -112801496 - HERV16 LTR ERVL -4683 313 1 890 332 46 10 chr6 76478061 76478471 -112801083 - LTR16A LTR ERVL -5 445 21 830 278 40 4 chr6 76478938 76479186 -112800368 + MER110 LTR ERV1 212 468 -23 323 256 124 16 chr6 76479411 76479532 -112800022 + MER58B DNA MER1_type 207 340 -1 25 51 0 0 chr6 76480354 76480393 -112799161 + AT_rich Low_complexity Low_complexity 1 39 0 1144 171 4 37 chr6 76480557 76480803 -112798751 + MER52A LTR ERV1 1518 1755 0 1129 254 40 43 chr6 76480825 76481176 -112798378 - MLT1B LTR MaLR -2 388 39 189 0 0 0 chr6 76481180 76481201 -112798353 + (T)n Simple_repeat Simple_repeat 1 21 0 182 258 54 65 chr6 76481813 76481906 -112797648 - MIR3 SINE MIR -14 194 103 294 123 0 0 chr6 76483149 76483206 -112796348 + (T)n Simple_repeat Simple_repeat 1 57 0 22 35 0 0 chr6 76486513 76486542 -112793012 + AT_rich Low_complexity Low_complexity 1 29 0 1667 261 48 56 chr6 76486556 76487411 -112792143 - L1MC5 LINE L1 -62 7899 7052 21 0 0 0 chr6 76487415 76487436 -112792118 + AT_rich Low_complexity Low_complexity 1 21 0 364 330 93 23 chr6 76487640 76487898 -112791656 + L1M4 LINE L1 4744 5019 -1127 888 251 28 77 chr6 76488495 76488821 -112790733 - MLT1H LTR MaLR -217 332 23 25 90 0 0 chr6 76489473 76489540 -112790014 + AT_rich Low_complexity Low_complexity 1 67 0 190 326 23 23 chr6 76489796 76489882 -112789672 + MIR SINE MIR 11 96 -166 417 262 93 47 chr6 76490028 76490242 -112789312 + L2 LINE L2 3086 3309 -4 314 351 39 34 chr6 76490990 76491195 -112788359 + L2 LINE L2 1931 2136 -1178 58 28 0 0 chr6 76491882 76491954 -112787600 + AT_rich Low_complexity Low_complexity 1 72 0 21 57 0 0 chr6 76492059 76492094 -112787460 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr6 76492323 76492355 -112787199 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr6 76492697 76492724 -112786830 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr6 76494321 76494343 -112785211 + AT_rich Low_complexity Low_complexity 1 22 0 501 233 16 8 chr6 76494740 76494869 -112784685 + L1M4 LINE L1 4776 4905 -1241 3544 43 0 0 chr6 76494869 76495307 -112784247 - L1PA4 LINE L1 -1 6154 5717 427 261 59 31 chr6 76495313 76495535 -112784019 - L1M4 LINE L1 -1381 4765 4538 188 135 27 0 chr6 76495862 76495899 -112783655 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 352 301 68 37 chr6 76496086 76496249 -112783305 - L2 LINE L2 0 3313 3146 1374 263 26 19 chr6 76496495 76496917 -112782637 - LTR40b LTR ERVL -4 458 34 494 83 24 0 chr6 76497029 76497113 -112782441 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 33 0 0 0 chr6 76497497 76497530 -112782024 + AT_rich Low_complexity Low_complexity 1 33 0 781 325 73 19 chr6 76499357 76499974 -112779580 + L2 LINE L2 2656 3301 -12 1559 212 7 7 chr6 76499983 76500280 -112779274 - AluJo SINE Alu -15 297 1 2015 113 3 3 chr6 76500452 76500759 -112778795 - AluSg SINE Alu 0 307 1 290 357 62 8 chr6 76500928 76501057 -112778497 - L2 LINE L2 0 3272 3137 27 29 0 0 chr6 76501214 76501248 -112778306 + AT_rich Low_complexity Low_complexity 1 34 0 234 330 11 0 chr6 76501454 76501545 -112778009 + HAL1 LINE L1 302 393 -2114 381 383 54 4 chr6 76501601 76501841 -112777713 + HAL1 LINE L1 484 735 -1772 1049 257 98 50 chr6 76501968 76502531 -112777023 + HAL1 LINE L1 1533 2129 -378 2120 123 0 0 chr6 76502531 76502824 -112776730 - AluSx SINE Alu -19 293 1 1049 257 98 50 chr6 76502824 76502874 -112776680 + HAL1 LINE L1 2129 2175 -332 361 333 55 55 chr6 76502909 76503146 -112776408 + HAL1 LINE L1 2270 2506 -1 682 281 77 13 chr6 76503797 76504032 -112775522 + LTR16C LTR ERVL 242 491 0 414 335 122 44 chr6 76504113 76504564 -112774990 - L2 LINE L2 -653 2661 2176 368 337 81 39 chr6 76505389 76505772 -112773782 + LTR16C LTR ERVL 93 491 0 435 347 53 14 chr6 76505859 76506144 -112773410 - L2 LINE L2 -528 2786 2491 22 0 0 0 chr6 76506403 76506425 -112773129 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr6 76506701 76506729 -112772825 + AT_rich Low_complexity Low_complexity 1 28 0 403 307 37 12 chr6 76506787 76506835 -112772719 - MIR SINE MIR 0 262 217 1614 106 0 9 chr6 76506835 76507062 -112772492 - AluSg/x SINE Alu -4 306 82 403 307 37 12 chr6 76507062 76507176 -112772378 - MIR SINE MIR -45 217 96 2747 126 10 0 chr6 76507288 76507700 -112771854 + THE1B-int LTR MaLR 1165 1580 0 2356 153 0 3 chr6 76507700 76508065 -112771489 + THE1B LTR MaLR 1 364 0 196 175 32 0 chr6 76508404 76508467 -112771087 + (TA)n Simple_repeat Simple_repeat 2 66 0 271 191 0 34 chr6 76508504 76508632 -112770922 + (TAAA)n Simple_repeat Simple_repeat 1 123 0 2219 97 3 3 chr6 76510673 76510972 -112768582 + AluSx SINE Alu 1 299 -13 3042 160 82 5 chr6 76512413 76512977 -112766577 + L1MC1 LINE L1 5398 6004 -329 268 348 32 25 chr6 76513501 76513780 -112765774 + HAL1b LINE L1 365 645 -703 791 210 64 18 chr6 76514193 76514412 -112765142 + LTR34 LTR ERV1 293 521 -178 23 54 0 0 chr6 76514429 76514466 -112765088 + AT_rich Low_complexity Low_complexity 1 37 0 420 259 15 30 chr6 76514494 76514629 -112764925 + LTR34 LTR ERV1 553 685 -14 207 0 0 0 chr6 76514713 76514736 -112764818 + (CA)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr6 76515441 76515463 -112764091 + AT_rich Low_complexity Low_complexity 1 22 0 1598 198 60 11 chr6 76515843 76516212 -112763342 + L1MB7 LINE L1 5779 6165 -19 315 104 0 0 chr6 76517255 76517303 -112762251 + (CA)n Simple_repeat Simple_repeat 1 48 0 206 152 0 22 chr6 76517701 76517747 -112761807 + CT-rich Low_complexity Low_complexity 2 46 0 25 0 0 0 chr6 76518391 76518416 -112761138 + AT_rich Low_complexity Low_complexity 1 25 0 1315 147 78 17 chr6 76518663 76518894 -112760660 - MSTB1 LTR MaLR 0 432 188 1920 151 20 14 chr6 76518906 76519102 -112760452 - L1PB3 LINE L1 -2 6152 5952 3818 100 11 7 chr6 76519102 76519654 -112759900 - MER41A LTR ERV1 0 554 1 1920 151 20 14 chr6 76519654 76519807 -112759747 - L1PB3 LINE L1 -202 5952 5801 1632 130 11 39 chr6 76519808 76520092 -112759462 - L1PB3 LINE L1 -459 5695 5420 944 220 0 21 chr6 76520097 76520288 -112759266 - MSTB1 LTR MaLR -238 188 2 849 118 0 33 chr6 76520536 76520689 -112758865 - LTR7 LTR ERV1 0 450 303 27 0 0 0 chr6 76520858 76520885 -112758669 + AT_rich Low_complexity Low_complexity 1 27 0 859 155 48 0 chr6 76520885 76521053 -112758501 - L1MA8 LINE L1 -4 6287 6112 2214 82 0 3 chr6 76521344 76521635 -112757919 - AluY SINE Alu -21 290 1 23 54 0 0 chr6 76522796 76522833 -112756721 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr6 76523859 76523896 -112755658 + AT_rich Low_complexity Low_complexity 1 37 0 1082 224 0 39 chr6 76524086 76524340 -112755214 + AluJo SINE Alu 44 287 -25 32 26 0 0 chr6 76525098 76525137 -112754417 + AT_rich Low_complexity Low_complexity 1 39 0 5810 129 80 2 chr6 76525671 76526600 -112752954 - THE1B-int LTR MaLR -579 1001 1 2546 118 3 8 chr6 76526602 76526966 -112752588 - THE1B LTR MaLR -2 362 1 1512 213 3 0 chr6 76527341 76527627 -112751927 - AluSx SINE Alu -25 287 1 18068 82 6 6 chr6 76528552 76531101 -112748453 - L1P LINE L1 -2586 3560 1011 10246 63 2 1 chr6 76531095 76532424 -112747130 + L1P LINE L1 3548 4878 -1268 * 840 224 94 14 chr6 76532525 76532748 -112746806 - MST-int LTR MaLR -1133 518 278 * 2381 129 31 60 chr6 76532717 76533204 -112746350 - THE1C-int LTR MaLR -1106 474 2 1614 180 61 22 chr6 76533204 76533565 -112745989 - THE1C LTR MaLR 0 375 1 257 317 135 0 chr6 76533569 76533673 -112745881 + MIR SINE MIR 48 165 -97 284 250 0 36 chr6 76533936 76534020 -112745534 - L2 LINE L2 -3 3310 3230 216 0 0 0 chr6 76534109 76534133 -112745421 + (CTATA)n Simple_repeat Simple_repeat 4 27 0 362 275 58 0 chr6 76534679 76534799 -112744755 - MLT1H LTR MaLR -1 548 422 389 317 30 24 chr6 76534894 76535058 -112744496 - MLT1H LTR MaLR -262 287 123 874 228 71 53 chr6 76535313 76535651 -112743903 - MER2 DNA MER2_type 0 344 1 2146 177 18 27 chr6 76536061 76536507 -112743047 + MER65A LTR ERV1 4 445 0 22 0 0 0 chr6 76537574 76537596 -112741958 + AT_rich Low_complexity Low_complexity 1 22 0 354 333 56 12 chr6 76538424 76538586 -112740968 - MIR SINE MIR -15 247 79 1274 276 85 12 chr6 76538690 76539042 -112740512 + MLT1G LTR MaLR 148 536 -54 908 221 4 78 chr6 76539042 76539300 -112740254 + MER8 DNA MER2_type 1 239 0 1274 276 85 12 chr6 76539300 76539360 -112740194 + MLT1G LTR MaLR 536 590 0 290 267 0 0 chr6 76539360 76539420 -112740134 - MIR SINE MIR -191 71 12 5651 254 27 21 chr6 76539515 76540989 -112738565 + L1PA12 LINE L1 2248 3712 -3872 1183 189 65 93 chr6 76540989 76541375 -112738179 - THE1C LTR MaLR 0 375 1 5651 254 27 21 chr6 76541375 76541988 -112737566 + L1PA12 LINE L1 3712 4350 -3234 2046 122 60 28 chr6 76541988 76542341 -112737213 - THE1B LTR MaLR 0 364 1 5651 254 27 21 chr6 76542341 76542628 -112736926 + L1PA12 LINE L1 4350 4634 -2950 23 78 0 0 chr6 76542948 76542999 -112736555 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr6 76543204 76543232 -112736322 + AT_rich Low_complexity Low_complexity 1 28 0 475 283 22 23 chr6 76543569 76543820 -112735734 - MER67D LTR ERV1 0 514 229 892 208 11 29 chr6 76543821 76544092 -112735462 + MSTD LTR MaLR 1 315 -81 396 0 0 0 chr6 76544092 76544136 -112735418 + (TA)n Simple_repeat Simple_repeat 2 45 0 892 208 11 29 chr6 76544136 76544217 -112735337 + MSTD LTR MaLR 315 396 0 * 1110 184 8 82 chr6 76544217 76544465 -112735089 - MER67D LTR ERV1 -284 230 3 206 157 20 39 chr6 76544554 76544605 -112734949 + (TTATA)n Simple_repeat Simple_repeat 4 53 0 25 31 0 0 chr6 76545714 76545746 -112733808 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr6 76545975 76546018 -112733536 + AT_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr6 76546112 76546150 -112733404 + AT_rich Low_complexity Low_complexity 1 38 0 343 314 90 16 chr6 76546309 76546564 -112732990 + LTR16C LTR ERVL 198 471 -20 2478 74 3 0 chr6 76548134 76548443 -112731111 - AluSg SINE Alu 0 310 1 589 225 31 62 chr6 76549988 76550230 -112729324 - MER106B DNA MER1_type -2 1057 1 258 373 141 18 chr6 76551451 76551748 -112727806 + L2 LINE L2 2698 3026 -287 23 33 0 0 chr6 76552358 76552388 -112727166 + AT_rich Low_complexity Low_complexity 1 30 0 1601 182 7 37 chr6 76552388 76552685 -112726869 - AluJb SINE Alu -24 288 1 22 0 0 0 chr6 76553332 76553354 -112726200 + AT_rich Low_complexity Low_complexity 1 22 0 24 91 0 0 chr6 76553451 76553517 -112726037 + AT_rich Low_complexity Low_complexity 1 66 0 2852 12 0 0 chr6 76553777 76554098 -112725456 - L1PA2 LINE L1 -457 5698 5378 3996 9 0 0 chr6 76554098 76554550 -112725004 + L1PA2 LINE L1 5702 6155 0 263 49 24 0 chr6 76555705 76555746 -112723808 + (TTA)n Simple_repeat Simple_repeat 1 42 0 2007 97 3 21 chr6 76555753 76556042 -112723512 - AluY SINE Alu -27 284 1 22 70 0 0 chr6 76556379 76556422 -112723132 + AT_rich Low_complexity Low_complexity 1 43 0 958 234 132 22 chr6 76556690 76557143 -112722411 - MER89 LTR ERV1 -7 552 6 234 244 261 34 chr6 76557871 76557990 -112721564 + MIR SINE MIR 1 146 -116 2267 136 13 5 chr6 76558083 76558457 -112721097 - L1PA13 LINE L1 -1 6162 5786 31 82 0 0 chr6 76558881 76558954 -112720600 + AT_rich Low_complexity Low_complexity 1 73 0 35 41 0 0 chr6 76559500 76559549 -112720005 + AT_rich Low_complexity Low_complexity 1 49 0 504 307 117 15 chr6 76559838 76560043 -112719511 - MLT1K LTR MaLR -10 578 353 26 0 0 0 chr6 76560457 76560483 -112719071 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr6 76561109 76561133 -112718421 + AT_rich Low_complexity Low_complexity 1 24 0 611 305 51 48 chr6 76561504 76561796 -112717758 + MLT1I LTR MaLR 84 376 -33 25 0 0 0 chr6 76562974 76562999 -112716555 + AT_rich Low_complexity Low_complexity 1 25 0 1562 274 46 48 chr6 76563101 76563664 -112715890 + MLT1F1 LTR MaLR 6 567 0 280 284 35 69 chr6 76563954 76564070 -112715484 - MIR SINE MIR -64 144 33 571 137 35 176 chr6 76564260 76564487 -112715067 - THE1C LTR MaLR -65 310 116 2194 125 0 0 chr6 76565921 76566233 -112713321 + AluSx SINE Alu 1 312 0 39 84 0 0 chr6 76566441 76566536 -112713018 + AT_rich Low_complexity Low_complexity 1 95 0 598 134 87 199 chr6 76566829 76567060 -112712494 + MER7A DNA MER2_type 1 203 -143 1157 269 76 70 chr6 76567423 76567936 -112711618 - LTR40a LTR ERVL 0 519 4 5568 140 8 10 chr6 76568469 76569320 -112710234 + L1MA3 LINE L1 4763 5612 -693 2083 144 83 5 chr6 76569320 76569717 -112709837 - MSTA LTR MaLR 0 428 1 5568 140 8 10 chr6 76569717 76570220 -112709334 + L1MA3 LINE L1 5612 6115 -190 212 0 36 0 chr6 76570220 76570248 -112709306 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1153 130 0 0 chr6 76570253 76570414 -112709140 - AluSq SINE Alu -20 293 133 1158 120 11 0 chr6 76570414 76570597 -112708957 + L1MA3 LINE L1 6115 6299 -6 30 27 0 0 chr6 76570597 76570634 -112708920 + AT_rich Low_complexity Low_complexity 1 37 0 1980 141 0 7 chr6 76571071 76571377 -112708177 - AluSg SINE Alu -6 304 1 1043 227 35 51 chr6 76571790 76572149 -112707405 + MLT2B1 LTR ERVL 1 347 -207 312 161 0 0 chr6 76572149 76572211 -112707343 + (TA)n Simple_repeat Simple_repeat 2 63 0 49 32 0 0 chr6 76572220 76572283 -112707271 + AT_rich Low_complexity Low_complexity 1 63 0 261 94 75 19 chr6 76572299 76572352 -112707202 + MLT2B1 LTR ERVL 465 520 0 753 216 204 8 chr6 76574969 76575208 -112704346 + L1MD3 LINE L1 6957 7079 -706 483 250 33 0 chr6 76575240 76575360 -112704194 + MLT1F1 LTR MaLR 1 124 -443 2175 209 50 29 chr6 76575361 76575941 -112703613 + L1MD3 LINE L1 7404 7995 0 1488 218 27 15 chr6 76579098 76579433 -112700121 - MLT1A1 LTR MaLR -5 360 22 254 194 44 64 chr6 76579554 76579658 -112699896 - MLT1G1 LTR MaLR -221 374 220 1416 231 24 39 chr6 76580578 76581037 -112698517 + L1P LINE L1 3149 3600 -2546 3042 193 50 19 chr6 76581040 76581777 -112697777 + L1P LINE L1 4605 5364 -782 * 4372 174 38 22 chr6 76581770 76582615 -112696939 + L1M1 LINE L1 1504 2361 -5204 927 191 10 57 chr6 76582615 76582824 -112696730 - AluSg/x SINE Alu -10 300 102 1471 143 153 10 chr6 76582862 76583170 -112696384 + Tigger4(Zombi) DNA MER2_type 2380 2731 0 653 293 22 0 chr6 76583170 76583470 -112696084 - L1ME LINE L1 -555 5607 5302 229 305 0 0 chr6 76583471 76583566 -112695988 - L1ME LINE L1 -861 5285 5191 28 0 0 0 chr6 76583929 76583957 -112695597 + AT_rich Low_complexity Low_complexity 1 28 0 1319 271 40 16 chr6 76584533 76585115 -112694439 + L1ME LINE L1 3091 3686 -2460 189 0 0 0 chr6 76585115 76585136 -112694418 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 308 327 99 50 chr6 76585214 76585596 -112693958 + L1ME LINE L1 4907 5307 -839 640 296 21 26 chr6 76586016 76586249 -112693305 + MLT1E2 LTR MaLR 385 616 -10 1065 224 8 16 chr6 76586257 76586512 -112693042 + MLT1E2-int LTR MaLR 4 256 -1115 35 41 0 0 chr6 76587377 76587426 -112692128 + AT_rich Low_complexity Low_complexity 1 49 0 228 348 43 35 chr6 76587651 76587792 -112691762 - MIR SINE MIR 0 262 121 381 322 187 0 chr6 76588339 76588569 -112690985 + L3b LINE CR1 1102 1374 -209 21 57 0 0 chr6 76589719 76589754 -112689800 + AT_rich Low_complexity Low_complexity 1 35 0 326 196 14 14 chr6 76589756 76589842 -112689712 + FLAM_A SINE Alu 65 128 -5 636 332 70 23 chr6 76590350 76590736 -112688818 - MLT1H1 LTR MaLR 0 555 152 889 205 20 33 chr6 76590862 76591106 -112688448 - L1ME LINE L1 -1293 4853 4613 437 244 95 24 chr6 76591144 76591417 -112688137 + L1M3 LINE L1 5159 5459 -721 267 259 95 27 chr6 76591527 76591674 -112687880 + L1ME LINE L1 5685 5841 -329 22 35 0 0 chr6 76592189 76592218 -112687336 + AT_rich Low_complexity Low_complexity 1 29 0 2325 127 0 17 chr6 76592353 76592700 -112686854 + MER61A LTR ERV1 1 341 -2 1120 220 56 53 chr6 76592821 76593252 -112686302 + Charlie1b DNA MER1_type 7 438 -85 745 246 33 38 chr6 76593252 76593463 -112686091 - MER63A DNA MER1_type 0 210 1 232 265 152 53 chr6 76594036 76594168 -112685386 + MIR SINE MIR 68 212 -50 30 27 0 0 chr6 76594313 76594350 -112685204 + AT_rich Low_complexity Low_complexity 1 37 0 511 146 42 0 chr6 76596005 76596101 -112683453 - L1MC1 LINE L1 0 6333 6234 1130 196 0 48 chr6 76596373 76596603 -112682951 - AluJo SINE Alu -93 219 1 247 305 86 66 chr6 76596739 76596890 -112682664 + MER69 DNA AcHobo 221 374 -2152 585 247 81 65 chr6 76597230 76597542 -112682012 - L1ME2 LINE L1 -10 6154 5833 213 39 0 0 chr6 76597542 76597568 -112681986 + (TG)n Simple_repeat Simple_repeat 1 26 0 585 247 81 65 chr6 76597568 76597639 -112681915 - L1ME2 LINE L1 -331 5833 5765 248 278 17 0 chr6 76597644 76597881 -112681673 + (TA)n Simple_repeat Simple_repeat 1 241 0 1437 205 57 50 chr6 76597972 76598137 -112681417 - L1ME2 LINE L1 -409 5755 5593 865 197 93 5 chr6 76598137 76598330 -112681224 - MER6B DNA MER2_type 0 210 1 1437 205 57 50 chr6 76598330 76598588 -112680966 - L1ME2 LINE L1 -571 5593 5329 849 271 62 28 chr6 76598587 76599119 -112680435 - L1MEc LINE L1 -3437 2778 2229 * 4044 139 23 2 chr6 76599111 76599919 -112679635 - L1PA14 LINE L1 -12 6149 5305 276 227 57 64 chr6 76599897 76600161 -112679393 - L1MEc LINE L1 -4130 2266 2005 * 345 327 75 0 chr6 76600793 76600831 -112678723 - L1M4 LINE L1 -3525 2621 2587 321 47 0 0 chr6 76600831 76600874 -112678680 + (TG)n Simple_repeat Simple_repeat 2 44 0 345 327 75 0 chr6 76600874 76600994 -112678560 - L1M4 LINE L1 -3559 2587 2451 334 318 51 5 chr6 76601033 76601247 -112678307 - L1M4 LINE L1 -3649 2497 2274 361 231 0 0 chr6 76601307 76601385 -112678169 - L1PA15 LINE L1 -1263 4883 4806 5525 156 27 5 chr6 76601385 76602597 -112676957 + L1PA15 LINE L1 4912 6152 -13 21 26 0 26 chr6 76602597 76602615 -112676939 + AT_rich Low_complexity Low_complexity 1 18 -20 2344 68 3 0 chr6 76602615 76602922 -112676632 - AluY SINE Alu -3 308 1 21 26 0 26 chr6 76602922 76602942 -112676612 + AT_rich Low_complexity Low_complexity 18 38 0 26 93 0 0 chr6 76602978 76603053 -112676501 + AT_rich Low_complexity Low_complexity 1 75 0 248 0 31 0 chr6 76603170 76603202 -112676352 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 25 51 0 0 chr6 76603917 76603956 -112675598 + AT_rich Low_complexity Low_complexity 1 39 0 360 64 0 0 chr6 76604378 76604425 -112675129 + (TG)n Simple_repeat Simple_repeat 1 47 0 22 35 0 0 chr6 76605005 76605034 -112674520 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr6 76605054 76605080 -112674474 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr6 76606206 76606234 -112673320 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 76606259 76606283 -112673271 + AT_rich Low_complexity Low_complexity 1 24 0 1875 122 14 3 chr6 76606441 76606736 -112672818 - AluSq SINE Alu -15 298 1 1626 140 36 111 chr6 76606774 76607160 -112672394 - THE1C LTR MaLR -1 374 18 1380 189 30 27 chr6 76607320 76607621 -112671933 - AluJo SINE Alu -1 311 10 27 73 0 0 chr6 76607894 76607949 -112671605 + AT_rich Low_complexity Low_complexity 1 55 0 23 33 0 0 chr6 76608520 76608550 -112671004 + AT_rich Low_complexity Low_complexity 1 30 0 1421 173 75 7 chr6 76609252 76609547 -112670007 - L1MC/D LINE L1 -733 5600 5286 2029 240 66 32 chr6 76609606 76609769 -112669785 + L1M4 LINE L1 4549 4705 -1441 7119 222 45 27 chr6 76609769 76611493 -112668061 - MER52A LTR ERV1 0 1755 1 2029 240 66 32 chr6 76611493 76612038 -112667516 + L1M4 LINE L1 4705 5281 -865 26 0 0 0 chr6 76612038 76612064 -112667490 + AT_rich Low_complexity Low_complexity 1 26 0 22 106 0 0 chr6 76612357 76612442 -112667112 + AT_rich Low_complexity Low_complexity 1 85 0 265 222 53 23 chr6 76612460 76612631 -112666923 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 217 317 24 0 chr6 76612989 76613071 -112666483 + L2 LINE L2 3189 3272 0 22 0 0 0 chr6 76614319 76614341 -112665213 + AT_rich Low_complexity Low_complexity 1 22 0 1532 217 0 10 chr6 76614644 76614957 -112664597 - AluSg SINE Alu 0 310 1 21 0 0 0 chr6 76615565 76615586 -112663968 + AT_rich Low_complexity Low_complexity 1 21 0 2249 109 3 10 chr6 76615890 76616202 -112663352 - AluSg SINE Alu 0 310 1 427 219 58 80 chr6 76617328 76617465 -112662089 - MLT1H LTR MaLR -6 543 410 1671 141 0 93 chr6 76617846 76618158 -112661396 - AluSx SINE Alu -27 285 3 215 174 0 22 chr6 76618170 76618216 -112661338 + (TTA)n Simple_repeat Simple_repeat 2 46 0 728 208 13 0 chr6 76618422 76618581 -112660973 + LTR25-int LTR ERV1 6836 6996 0 4344 147 9 70 chr6 76618581 76619424 -112660130 + LTR25 LTR ERV1 1 792 -2 250 229 73 0 chr6 76619595 76619691 -112659863 + MER57-int LTR ERV1 2273 2375 -2496 2823 16 0 0 chr6 76619695 76620011 -112659543 + AluYb8 SINE Alu 1 316 -2 355 265 10 0 chr6 76620034 76620136 -112659418 + MER34 LTR ERV1 135 237 -305 2268 229 80 77 chr6 76620356 76621957 -112657597 + MER57-int LTR ERV1 2009 5520 -1349 24 32 0 0 chr6 76621990 76622021 -112657533 + AT_rich Low_complexity Low_complexity 1 31 0 396 329 38 25 chr6 76623216 76623374 -112656180 + MER5B DNA MER1_type 4 163 -15 235 277 208 38 chr6 76624031 76624190 -112655364 - LTR67 LTR ERVL 0 557 372 228 335 39 78 chr6 76624325 76624555 -112654999 - LTR67 LTR ERVL -299 258 38 286 193 15 37 chr6 76625112 76625247 -112654307 + CT-rich Low_complexity Low_complexity 2 133 0 780 245 42 0 chr6 76625411 76625603 -112653951 - MER3 DNA MER1_type -1 208 9 1869 141 0 32 chr6 76625630 76625943 -112653611 - AluSx SINE Alu -5 307 5 316 275 92 48 chr6 76626017 76626224 -112653330 + L1ME LINE L1 5602 5817 -304 1971 94 25 7 chr6 76627336 76627612 -112651942 - AluSc SINE Alu -13 296 16 766 247 30 51 chr6 76627910 76628060 -112651494 + MER97a DNA MER1_type? 44 187 -707 1589 191 7 13 chr6 76628060 76628358 -112651196 - AluJo SINE Alu -13 299 4 766 247 30 51 chr6 76628358 76628503 -112651051 + MER97a DNA MER1_type? 187 333 -561 1155 268 67 7 chr6 76628564 76628997 -112650557 + MER97a DNA MER1_type? 431 889 -5 311 404 0 0 chr6 76629174 76629283 -112650271 - L2 LINE L2 0 3272 3164 207 306 0 14 chr6 76629847 76629919 -112649635 + CT-rich Low_complexity Low_complexity 2 72 0 340 202 128 7 chr6 76630841 76630986 -112648568 + MER110 LTR ERV1 316 468 0 541 383 65 27 chr6 76631099 76631687 -112647867 + L2 LINE L2 941 1550 -1764 21 57 0 0 chr6 76632000 76632035 -112647519 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr6 76634077 76634100 -112645454 + AT_rich Low_complexity Low_complexity 1 23 0 230 200 0 0 chr6 76635728 76635778 -112643776 - L1MC4 LINE L1 -1340 6702 6653 1268 242 108 5 chr6 76635821 76636255 -112643299 + L1 LINE L1 2778 3256 -2890 182 125 0 50 chr6 76636350 76636390 -112643164 + (TAA)n Simple_repeat Simple_repeat 3 40 0 326 263 16 80 chr6 76636446 76636620 -112642934 + MIR SINE MIR 35 262 0 275 323 32 0 chr6 76636649 76636742 -112642812 + MIR SINE MIR 160 255 -7 186 218 91 0 chr6 76636746 76636801 -112642753 - MIR SINE MIR -56 206 147 21 57 0 0 chr6 76637884 76637919 -112641635 + AT_rich Low_complexity Low_complexity 1 35 0 405 227 239 37 chr6 76638024 76638187 -112641367 + MIR SINE MIR 66 261 -1 68 65 0 0 chr6 76639601 76639725 -112639829 + AT_rich Low_complexity Low_complexity 1 124 0 381 326 63 89 chr6 76639814 76640532 -112639022 + L2 LINE L2 2393 3100 -213 30 0 0 0 chr6 76641200 76641230 -112638324 + AT_rich Low_complexity Low_complexity 1 30 0 283 216 45 28 chr6 76641235 76641411 -112638143 + (TA)n Simple_repeat Simple_repeat 1 179 0 548 259 74 91 chr6 76641478 76641656 -112637898 + L2 LINE L2 2905 3075 -238 1690 112 13 0 chr6 76641656 76641888 -112637666 - AluSx SINE Alu -24 288 54 548 259 74 91 chr6 76641888 76642072 -112637482 + L2 LINE L2 3075 3261 -52 861 291 97 40 chr6 76644304 76644448 -112635106 + MLT1D LTR MaLR 2 136 -369 4053 190 23 14 chr6 76644448 76645233 -112634321 + MER54B LTR ERVL 2 793 0 861 291 97 40 chr6 76645233 76645563 -112633991 + MLT1D LTR MaLR 136 503 -2 1653 209 17 21 chr6 76645563 76646012 -112633542 + MLT1D-int LTR MaLR 1 550 -821 254 206 0 41 chr6 76646170 76646243 -112633311 - L1MC4 LINE L1 -1333 6709 6640 260 27 27 0 chr6 76646255 76646292 -112633262 + (CA)n Simple_repeat Simple_repeat 2 39 0 2467 43 3 10 chr6 76646454 76646756 -112632798 + AluY SINE Alu 1 300 -11 1438 301 53 78 chr6 76647711 76648588 -112630966 - Charlie2b DNA MER1_type -1701 1081 235 2421 56 0 7 chr6 76648588 76648891 -112630663 - AluY SINE Alu -10 301 1 1438 301 53 78 chr6 76648891 76649108 -112630446 - Charlie2b DNA MER1_type -2547 235 14 2094 174 13 13 chr6 76650968 76651358 -112628196 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr6 76651604 76651626 -112627928 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 76651828 76651856 -112627698 + AT_rich Low_complexity Low_complexity 1 28 0 28 61 0 0 chr6 76652033 76652082 -112627472 + AT_rich Low_complexity Low_complexity 1 49 0 41288 40 2 2 chr6 76652193 76658059 -112621495 + L1PA3 LINE L1 286 6152 -3 298 287 8 25 chr6 76658120 76658242 -112621312 + L1ME2 LINE L1 6026 6145 -19 357 354 11 17 chr6 76658542 76658720 -112620834 + LTR33 LTR ERVL 1 177 -344 252 287 36 62 chr6 76658803 76658998 -112620556 + LTR33 LTR ERVL 328 517 -4 1596 201 88 44 chr6 76659240 76659652 -112619902 + MSTB1 LTR MaLR 1 356 -8 207 69 0 0 chr6 76659697 76659726 -112619828 + (A)n Simple_repeat Simple_repeat 1 29 0 1052 223 78 78 chr6 76659732 76660144 -112619410 + MER92A LTR ERV1 1 412 0 382 313 9 76 chr6 76660770 76660994 -112618560 + MER92A-int LTR ERV1 298 506 -4430 23 0 0 0 chr6 76662639 76662662 -112616892 + AT_rich Low_complexity Low_complexity 1 23 0 3227 82 24 2 chr6 76663341 76663804 -112615750 - L1P LINE L1 -3725 2421 1949 4999 39 0 0 chr6 76663804 76664398 -112615156 + L1PA5 LINE L1 5560 6153 -1 2619 234 29 35 chr6 76664400 76665171 -112614383 + L1M4 LINE L1 4170 4935 -1211 462 18 0 0 chr6 76665171 76665226 -112614328 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 304 97 32 0 chr6 76666372 76666434 -112613120 + A-rich Low_complexity Low_complexity 4 67 0 304 350 29 18 chr6 76666570 76666850 -112612704 + MER92A-int LTR ERV1 740 1022 -3914 254 296 19 62 chr6 76667413 76667575 -112611979 + MER110-int LTR ERV1 2643 2797 -1850 189 0 0 0 chr6 76667790 76667811 -112611743 + (A)n Simple_repeat Simple_repeat 1 21 0 616 156 22 67 chr6 76669556 76669691 -112609863 + FLAM_C SINE Alu 2 130 -3 265 318 0 0 chr6 76669708 76669771 -112609783 - MIR SINE MIR -190 72 10 4155 271 57 22 chr6 76670140 76672305 -112607249 + L1PBa LINE L1 6 1496 -5367 2058 160 33 0 chr6 76672305 76672668 -112606886 - THE1C LTR MaLR 0 375 1 4155 271 57 22 chr6 76672668 76672822 -112606732 + L1PBa LINE L1 1496 1643 -5220 2023 156 122 10 chr6 76673268 76673653 -112605901 - MSTA LTR MaLR 0 428 1 2051 226 22 15 chr6 76673814 76674278 -112605276 - MLT1C LTR MaLR 0 467 1 24 53 0 0 chr6 76675815 76675853 -112603701 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr6 76676052 76676080 -112603474 + AT_rich Low_complexity Low_complexity 1 28 0 1109 201 19 89 chr6 76676132 76676446 -112603108 + L1MA9 LINE L1 5977 6268 -44 1281 141 10 0 chr6 76676446 76676638 -112602916 + MER2 DNA MER2_type 1 194 -151 270 273 15 0 chr6 76676674 76676740 -112602814 + MER2 DNA MER2_type 265 331 -14 214 368 63 0 chr6 76677208 76677303 -112602251 - L2 LINE L2 0 3272 3172 25 31 0 0 chr6 76677877 76677909 -112601645 + AT_rich Low_complexity Low_complexity 1 32 0 3906 145 103 20 chr6 76679501 76680829 -112598725 - pTR5 LTR ERV1 -1 2605 1524 27 73 0 0 chr6 76681626 76681681 -112597873 + AT_rich Low_complexity Low_complexity 1 55 0 450 79 0 0 chr6 76681900 76681963 -112597591 + (TGGA)n Simple_repeat Simple_repeat 3 65 0 1721 165 95 40 chr6 76682190 76682589 -112596965 - L1MB1 LINE L1 -3 6165 5745 275 211 150 90 chr6 76683290 76683423 -112596131 - L2 LINE L2 -24 3289 3149 21 0 0 0 chr6 76683843 76683864 -112595690 + AT_rich Low_complexity Low_complexity 1 21 0 207 339 41 87 chr6 76684667 76684862 -112594692 - L3 LINE CR1 -10 1567 1382 801 138 51 0 chr6 76685613 76685751 -112593803 - L1MA4A LINE L1 -364 5939 5795 1716 119 157 0 chr6 76685886 76686172 -112593382 - THE1-int LTR MaLR -1036 544 214 303 18 0 107 chr6 76686591 76686647 -112592907 + L1M1 LINE L1 5776 5825 -477 282 179 0 0 chr6 76686655 76686711 -112592843 + (TA)n Simple_repeat Simple_repeat 1 56 0 23 33 0 0 chr6 76687420 76687450 -112592104 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 76687724 76687746 -112591808 + AT_rich Low_complexity Low_complexity 1 22 0 432 297 131 38 chr6 76688090 76688403 -112591151 - MLT1J2 LTR MaLR -40 410 69 21 0 0 0 chr6 76689008 76689029 -112590525 + AT_rich Low_complexity Low_complexity 1 21 0 1111 282 60 12 chr6 76689426 76689798 -112589756 - MLT1E LTR MaLR -1 594 201 264 329 58 7 chr6 76689854 76689991 -112589563 - MLT1E LTR MaLR -510 144 1 206 189 0 38 chr6 76690231 76690284 -112589270 + (CATATA)n Simple_repeat Simple_repeat 1 51 0 7073 189 32 16 chr6 76690299 76692347 -112587207 - L1M1 LINE L1 -504 6501 4416 6676 248 109 34 chr6 76692377 76696136 -112583418 - L1M1 LINE L1 -2808 4040 7 840 234 64 8 chr6 76696298 76696533 -112583021 - L1MD3 LINE L1 -15 7980 7733 23 54 0 0 chr6 76696728 76696765 -112582789 + AT_rich Low_complexity Low_complexity 1 37 0 367 352 99 44 chr6 76697331 76697797 -112581757 - L2 LINE L2 -187 3126 2633 220 336 17 26 chr6 76698051 76698167 -112581387 - L2 LINE L2 -3128 186 72 21 0 0 0 chr6 76698572 76698593 -112580961 + AT_rich Low_complexity Low_complexity 1 21 0 953 336 75 11 chr6 76698677 76699392 -112580162 + L1ME3 LINE L1 5297 6057 -105 525 378 99 3 chr6 76700120 76700475 -112579079 + L2 LINE L2 2111 2499 -815 2233 112 56 11 chr6 76700838 76701213 -112578341 - L1MA3 LINE L1 0 6305 5914 2033 129 0 43 chr6 76701213 76701561 -112577993 + L1MA3 LINE L1 5518 5850 -455 2710 195 31 15 chr6 76701737 76702353 -112577201 - L1MC1 LINE L1 -19 6314 5689 825 92 0 0 chr6 76702988 76703108 -112576446 + (TA)n Simple_repeat Simple_repeat 2 121 0 2677 295 31 66 chr6 76703208 76704278 -112575276 + L1PA13 LINE L1 347 1378 -5409 4402 207 43 49 chr6 76704382 76704923 -112574631 + L1MCa LINE L1 449 992 -5615 1922 156 7 0 chr6 76704923 76705231 -112574323 - AluSx SINE Alu -2 310 1 4402 207 43 49 chr6 76705231 76706026 -112573528 + L1MCa LINE L1 992 1968 -4639 1527 209 39 34 chr6 76706279 76706732 -112572822 - L1MB7 LINE L1 -1 6183 5735 * 2217 227 66 82 chr6 76706727 76707547 -112572007 - L1M4 LINE L1 -5349 1193 387 511 276 15 0 chr6 76707564 76707698 -112571856 - L1M4 LINE L1 -6393 149 14 353 178 0 14 chr6 76707721 76707794 -112571760 + MER31A LTR ERV1 6 77 -408 2753 238 34 6 chr6 76707801 76708312 -112571242 - L1MCa LINE L1 -3171 3255 2717 288 77 0 0 chr6 76708312 76708351 -112571203 + (TA)n Simple_repeat Simple_repeat 1 39 0 2753 238 34 6 chr6 76708351 76708553 -112571001 - L1MCa LINE L1 -3709 2717 2522 4155 200 15 8 chr6 76708553 76709399 -112570155 - Tigger1 DNA MER2_type -1536 882 31 367 289 138 44 chr6 76710201 76710519 -112569035 + MLT1J1 LTR MaLR 96 443 -3 1195 197 27 8 chr6 76710828 76711087 -112568467 - L1MB7 LINE L1 -1076 5070 4807 1014 234 25 56 chr6 76711085 76711281 -112568273 - L1M4 LINE L1 -1135 5011 4829 * 1535 181 0 0 chr6 76711281 76711524 -112568030 - AluSx SINE Alu -69 243 1 1014 234 25 56 chr6 76711524 76711686 -112567868 - L1M4 LINE L1 -1317 4829 4664 22 70 0 0 chr6 76711868 76711911 -112567643 + AT_rich Low_complexity Low_complexity 1 43 0 34 55 0 0 chr6 76713119 76713174 -112566380 + AT_rich Low_complexity Low_complexity 1 55 0 487 187 0 0 chr6 76713378 76713469 -112566085 + L1MA10 LINE L1 6213 6303 -31 311 322 17 9 chr6 76714330 76714445 -112565109 - L1MCa LINE L1 -4792 1634 1519 369 0 0 0 chr6 76714554 76714595 -112564959 + (CA)n Simple_repeat Simple_repeat 1 41 0 8723 153 12 15 chr6 76715590 76715987 -112563567 + Tigger1 DNA MER2_type 960 1357 -1061 203 61 30 0 chr6 76715987 76716020 -112563534 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 8723 153 12 15 chr6 76716020 76717086 -112562468 + Tigger1 DNA MER2_type 1357 2418 0 579 214 48 105 chr6 76717509 76717757 -112561797 + MER106A DNA MER1_type 3 236 0 25 0 0 0 chr6 76718775 76718800 -112560754 + AT_rich Low_complexity Low_complexity 1 25 0 810 232 86 67 chr6 76718970 76719429 -112560125 - LTR24B LTR ERV1 -115 461 1 21 71 0 0 chr6 76719476 76719518 -112560036 + AT_rich Low_complexity Low_complexity 1 42 0 21 71 0 0 chr6 76719587 76719629 -112559925 + AT_rich Low_complexity Low_complexity 1 42 0 970 226 53 5 chr6 76720728 76720936 -112558618 - MER2 DNA MER2_type -1 344 127 238 293 12 12 chr6 76721071 76721153 -112558401 + Charlie8 DNA MER1_type 96 177 -2240 1386 202 20 27 chr6 76721697 76721994 -112557560 - AluJo SINE Alu -16 296 2 22 0 0 0 chr6 76722616 76722638 -112556916 + AT_rich Low_complexity Low_complexity 1 22 0 1426 155 11 23 chr6 76722996 76723260 -112556294 + THE1C LTR MaLR 115 375 0 825 263 23 8 chr6 76723945 76724207 -112555347 + LTR37B LTR ERV1 6 271 -197 238 156 44 0 chr6 76724270 76724315 -112555239 - MER58A DNA MER1_type -1 223 177 1302 199 56 7 chr6 76724327 76724629 -112554925 - L1MA9 LINE L1 -214 6098 5782 30 89 0 0 chr6 76724651 76724730 -112554824 + AT_rich Low_complexity Low_complexity 1 79 0 1664 164 40 9 chr6 76724807 76725131 -112554423 + L1P LINE L1 1902 2235 -3911 246 136 0 0 chr6 76725785 76725829 -112553725 + (GGA)n Simple_repeat Simple_repeat 3 46 0 1355 234 12 35 chr6 76725901 76726285 -112553269 - L1MA9 LINE L1 -127 6176 5783 216 60 0 60 chr6 76726293 76726343 -112553211 + (TA)n Simple_repeat Simple_repeat 2 48 0 3992 167 21 10 chr6 76726351 76727052 -112552502 + MSTA-int LTR MaLR 872 1580 0 2169 158 46 24 chr6 76727054 76727471 -112552083 + MSTA LTR MaLR 3 428 0 1851 150 27 6 chr6 76727471 76727805 -112551749 - L1MA9 LINE L1 -542 5749 5409 533 354 111 9 chr6 76728598 76728914 -112550640 + L2 LINE L2 2417 2764 -550 1303 167 8 8 chr6 76728938 76729178 -112550376 - THE1C LTR MaLR 0 375 136 21 95 0 0 chr6 76729705 76729768 -112549786 + AT_rich Low_complexity Low_complexity 1 63 0 1099 259 33 9 chr6 76730867 76731203 -112548351 - L1ME2 LINE L1 -65 6099 5756 183 42 0 0 chr6 76731956 76731980 -112547574 + (CAA)n Simple_repeat Simple_repeat 2 25 0 315 332 31 19 chr6 76732373 76732528 -112547026 - MIR SINE MIR -62 146 20 298 323 24 73 chr6 76732675 76732839 -112546715 - MER5B DNA MER1_type -19 159 4 3080 144 76 0 chr6 76733440 76733955 -112545599 + MER41C LTR ERV1 1 554 0 33 56 0 0 chr6 76734204 76734258 -112545296 + AT_rich Low_complexity Low_complexity 1 54 0 1140 181 0 5 chr6 76734290 76734489 -112545065 - L1PA15 LINE L1 -7 6158 5961 261 393 9 27 chr6 76734602 76734714 -112544840 + L2 LINE L2 3163 3272 0 915 177 44 0 chr6 76735513 76735716 -112543838 + L1MA8 LINE L1 6078 6289 -2 22 0 0 0 chr6 76736668 76736690 -112542864 + AT_rich Low_complexity Low_complexity 1 22 0 212 384 67 9 chr6 76737759 76737983 -112541571 + L2 LINE L2 2378 2614 -700 281 371 26 0 chr6 76738011 76738127 -112541427 + L2 LINE L2 2743 2861 -453 5318 194 26 38 chr6 76738482 76738898 -112540656 + L1M2 LINE L1 4060 4479 -1723 1897 133 0 4 chr6 76738898 76739177 -112540377 + AluSq SINE Alu 1 278 -35 5318 194 26 38 chr6 76739177 76740179 -112539375 + L1M2 LINE L1 4479 5459 -743 421 317 42 12 chr6 76740708 76740875 -112538679 - MIR SINE MIR -71 191 20 35 83 0 0 chr6 76741044 76741128 -112538426 + AT_rich Low_complexity Low_complexity 1 84 0 755 255 78 0 chr6 76742758 76742950 -112536604 - MER58A DNA MER1_type -17 207 1 3835 201 28 4 chr6 76744289 76744999 -112534555 + MER44D DNA MER2_type 2 600 -5 255 229 0 0 chr6 76745073 76745134 -112534420 + (TATG)n Simple_repeat Simple_repeat 4 64 0 219 274 39 78 chr6 76746332 76746434 -112533120 - L2 LINE L2 -1 3271 3174 268 308 75 44 chr6 76746448 76746607 -112532947 + MER5A DNA MER1_type 1 164 -25 685 294 23 14 chr6 76746745 76746963 -112532591 - MIR SINE MIR 0 262 43 292 209 44 44 chr6 76746963 76747054 -112532500 - L1MEc LINE L1 -4473 2272 2182 706 173 7 0 chr6 76747476 76747615 -112531939 - L1MB4 LINE L1 -1 6179 6040 699 85 47 0 chr6 76747764 76747870 -112531684 - L1MA5A LINE L1 -26 6271 6161 189 243 0 27 chr6 76748083 76748120 -112531434 - L2 LINE L2 -36 3236 3201 181 324 42 0 chr6 76749346 76749417 -112530137 + MIR3 SINE MIR 132 205 -3 236 315 0 0 chr6 76749612 76749701 -112529853 + L1MC4 LINE L1 6614 6702 -1340 * 270 250 71 0 chr6 76749626 76749710 -112529844 - L1MC4 LINE L1 -1339 6703 6614 248 200 17 0 chr6 76749713 76749773 -112529781 + (TA)n Simple_repeat Simple_repeat 1 61 0 2783 260 45 27 chr6 76749875 76751077 -112528477 - L1M4 LINE L1 -2230 3916 2693 1958 241 46 105 chr6 76751081 76751363 -112528191 - L1MEc LINE L1 -5075 970 673 1968 149 0 0 chr6 76751363 76751664 -112527890 - AluSx SINE Alu -7 305 5 1958 241 46 105 chr6 76751664 76752404 -112527150 - L1MEc LINE L1 -5372 673 8 448 360 12 0 chr6 76752608 76752772 -112526782 + MIR3 SINE MIR 41 206 -2 1960 104 0 60 chr6 76753002 76753346 -112526208 - AluSg SINE Alu 0 326 1 1427 211 74 66 chr6 76753350 76753871 -112525683 - L1MA7 LINE L1 0 6291 5776 212 208 0 21 chr6 76753879 76753927 -112525627 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 1558 174 28 0 chr6 76753982 76754264 -112525290 - L1MA7 LINE L1 -503 5788 5499 234 91 0 0 chr6 76755509 76755542 -112524012 + (CA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr6 76755713 76755735 -112523819 + AT_rich Low_complexity Low_complexity 1 22 0 1087 309 62 3 chr6 76756573 76756910 -112522644 + LTR16A LTR ERVL 86 442 -8 1165 168 176 12 chr6 76757249 76757505 -112522049 - AluSg SINE Alu -2 298 1 359 340 40 0 chr6 76757505 76757605 -112521949 + MIR SINE MIR 41 144 -64 255 242 147 42 chr6 76757958 76758053 -112521501 + MLT1J2 LTR MaLR 197 301 -149 22 0 0 0 chr6 76758427 76758449 -112521105 + AT_rich Low_complexity Low_complexity 1 22 0 17305 53 5 1 chr6 76758695 76761528 -112518026 - L1PA6 LINE L1 -152 6002 3159 4452 132 30 88 chr6 76761529 76761938 -112517616 - Tigger1 DNA MER2_type -1568 850 520 1368 197 10 44 chr6 76761938 76762232 -112517322 - AluJo SINE Alu -26 286 3 4452 132 30 88 chr6 76762232 76762723 -112516831 - Tigger1 DNA MER2_type -1898 520 2 76 12 0 0 chr6 76762887 76762970 -112516584 + AT_rich Low_complexity Low_complexity 1 83 0 304 270 79 24 chr6 76762970 76763096 -112516458 - MIR SINE MIR -58 204 72 216 329 0 13 chr6 76763985 76764061 -112515493 - MER5A DNA MER1_type -108 81 7 194 206 118 0 chr6 76764587 76764655 -112514899 - L3 LINE CR1 -1210 367 292 382 297 31 27 chr6 76764665 76764887 -112514667 - L1MCa LINE L1 -5272 1154 932 1432 122 45 5 chr6 76764892 76765113 -112514441 + MER30 DNA MER1_type 1 230 0 339 130 0 0 chr6 76766000 76766054 -112513500 + (TA)n Simple_repeat Simple_repeat 1 54 0 30301 116 17 30 chr6 76766054 76771965 -112507589 - L1PA7 LINE L1 -9 6145 327 39688 48 2 2 chr6 76772066 76777021 -112502533 - L1P LINE L1 -1187 4959 8 190 348 59 17 chr6 76777035 76777153 -112502401 - L2 LINE L2 -1 3312 3190 416 223 22 86 chr6 76777156 76777295 -112502259 - MER58C DNA MER1_type -2 213 84 55 94 0 0 chr6 76778178 76778338 -112501216 + AT_rich Low_complexity Low_complexity 1 160 0 831 303 134 67 chr6 76778465 76779082 -112500472 + MLT2F LTR ERVL 5 663 0 23 0 0 0 chr6 76780056 76780079 -112499475 + AT_rich Low_complexity Low_complexity 1 23 0 244 267 30 122 chr6 76780391 76780522 -112499032 + MIR SINE MIR 116 234 -28 236 274 57 9 chr6 76780608 76780714 -112498840 + L1M4 LINE L1 3374 3484 -2662 298 299 26 17 chr6 76781118 76781235 -112498319 + L1ME LINE L1 477 594 -5936 1116 265 95 51 chr6 76781912 76782524 -112497030 + L1ME LINE L1 916 1554 -4989 557 272 26 10 chr6 76782570 76782765 -112496789 + L1ME LINE L1 2130 2327 -4213 4532 179 19 42 chr6 76782765 76783643 -112495911 + MER6 DNA MER2_type 1 858 -7 428 237 98 19 chr6 76783644 76783910 -112495644 + L1ME LINE L1 2320 2606 -3934 512 207 26 7 chr6 76784256 76784391 -112495163 - L1MB5 LINE L1 -3 6177 6029 2433 181 23 38 chr6 76784395 76785308 -112494246 + L1MA4 LINE L1 4889 5788 -512 * 7451 122 15 6 chr6 76785306 76786476 -112493078 - L1PA8 LINE L1 -1032 5114 3934 6456 93 8 3 chr6 76786476 76787515 -112492039 + L1PA8 LINE L1 5129 6171 -1 1037 199 14 50 chr6 76787515 76787796 -112491758 + L1MA4 LINE L1 5772 6042 -258 45 45 0 0 chr6 76787796 76787862 -112491692 + AT_rich Low_complexity Low_complexity 1 66 0 235 313 83 0 chr6 76787862 76787958 -112491596 - L1MB5 LINE L1 -133 6041 5938 1516 168 81 31 chr6 76787969 76788326 -112491228 + THE1C LTR MaLR 1 375 0 325 176 92 30 chr6 76788344 76788475 -112491079 - Charlie5 DNA MER1_type -84 2528 2390 2143 189 101 0 chr6 76788501 76788839 -112490715 - L1MA4 LINE L1 -10 6290 5889 207 69 0 0 chr6 76788839 76788868 -112490686 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2143 189 101 0 chr6 76788868 76789004 -112490550 - L1MA4 LINE L1 -411 5889 5768 2108 246 36 32 chr6 76788996 76789688 -112489866 - L1MB5 LINE L1 -211 5963 5269 * 1639 224 55 59 chr6 76790415 76791119 -112488435 + MER65-int LTR ERV1 1539 3093 -3238 469 227 8 30 chr6 76791167 76791299 -112488255 + MER65-int LTR ERV1 1737 1865 -3071 591 274 195 16 chr6 76791440 76791881 -112487673 + MER65-int LTR ERV1 2040 2559 -2564 631 210 20 46 chr6 76792059 76792254 -112487300 + MER65-int LTR ERV1 3536 3725 -2873 1121 213 69 93 chr6 76792324 76792953 -112486601 + MER65-int LTR ERV1 2481 2987 -1949 685 199 62 37 chr6 76793175 76793475 -112486079 + MER65-int LTR ERV1 3612 3960 -976 609 263 7 7 chr6 76793560 76793697 -112485857 + MER65-int LTR ERV1 3605 3741 -1130 2159 106 0 0 chr6 76794445 76794737 -112484817 + AluSc SINE Alu 18 309 0 1610 199 122 12 chr6 76795336 76795763 -112483791 + MER101 LTR ERV1 1 474 0 22 0 0 0 chr6 76795964 76795986 -112483568 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr6 76796810 76796844 -112482710 + AT_rich Low_complexity Low_complexity 1 34 0 7380 40 2 0 chr6 76796856 76798017 -112481537 - L1PA3 LINE L1 -3 6152 4992 2784 34 0 28 chr6 76798017 76798372 -112481182 + L1PA3 LINE L1 4643 4987 -1159 223 225 28 0 chr6 76798745 76798816 -112480738 + (TA)n Simple_repeat Simple_repeat 1 73 0 196 415 11 0 chr6 76798983 76799077 -112480477 + L3 LINE CR1 1329 1423 -154 26 82 0 0 chr6 76799869 76799930 -112479624 + AT_rich Low_complexity Low_complexity 1 61 0 526 201 65 41 chr6 76799948 76800117 -112479437 + LTR37A LTR ERV1 26 198 -228 1919 171 39 33 chr6 76800126 76800670 -112478884 + MLT2A2 LTR ERVL 3 552 -2 9012 113 12 0 chr6 76800680 76802294 -112477260 + HERVL LTR ERVL 3053 4738 -916 1156 193 38 67 chr6 76802294 76802733 -112476821 + MLT2A2 LTR ERVL 114 554 0 259 183 99 0 chr6 76802773 76802844 -112476710 + LTR37A LTR ERV1 321 398 -28 25 0 0 0 chr6 76803083 76803108 -112476446 + AT_rich Low_complexity Low_complexity 1 25 0 1723 174 7 3 chr6 76803115 76803419 -112476135 - AluSx SINE Alu -7 305 1 22 0 0 0 chr6 76803514 76803536 -112476018 + AT_rich Low_complexity Low_complexity 1 22 0 414 240 39 0 chr6 76803947 76804051 -112475503 + L2 LINE L2 1214 1321 -1993 7929 12 0 0 chr6 76804058 76805173 -112474381 - L1HS LINE L1 0 6155 5041 292 327 0 20 chr6 76805178 76805279 -112474275 + L2 LINE L2 1326 1424 -1890 723 284 4 74 chr6 76805282 76805553 -112474001 + L2 LINE L2 1960 2211 -1103 209 197 45 0 chr6 76805577 76805643 -112473911 + (TTATA)n Simple_repeat Simple_repeat 5 73 0 257 316 20 10 chr6 76805696 76805794 -112473760 + L2 LINE L2 2305 2403 -911 1152 251 144 24 chr6 76806154 76806565 -112472989 + L2 LINE L2 2398 2857 -457 284 181 24 84 chr6 76807025 76807108 -112472446 + MER67C LTR ERV1 1 78 -436 1272 226 52 131 chr6 76807144 76807639 -112471915 + MER67C LTR ERV1 59 514 0 2202 120 7 0 chr6 76808238 76808546 -112471008 + AluSx SINE Alu 2 311 -1 252 280 8 72 chr6 76809420 76809545 -112470009 - MER103 DNA DNA -10 156 40 879 270 68 35 chr6 76809781 76810261 -112469293 - MLT1E LTR MaLR 0 593 1 7631 94 11 5 chr6 76810483 76812392 -112467162 + L1PA7 LINE L1 4233 6154 0 23 54 0 0 chr6 76812630 76812667 -112466887 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 76812684 76812707 -112466847 + AT_rich Low_complexity Low_complexity 1 23 0 312 91 0 0 chr6 76813599 76813643 -112465911 + (GA)n Simple_repeat Simple_repeat 1 44 0 411 284 58 26 chr6 76813644 76813799 -112465755 - MER20 DNA MER1_type -58 161 2 2801 93 24 29 chr6 76814570 76814630 -112464924 + MLT2A2 LTR ERVL 1 60 -393 2186 111 0 0 chr6 76814630 76814927 -112464627 + AluSg SINE Alu 1 297 -13 2801 93 24 29 chr6 76814927 76815276 -112464278 + MLT2A2 LTR ERVL 60 408 -45 249 33 0 0 chr6 76815280 76815310 -112464244 + (TC)n Simple_repeat Simple_repeat 2 31 0 1980 52 0 4 chr6 76815627 76815877 -112463677 - L1P LINE L1 -2430 3716 3468 * 5293 41 6 0 chr6 76815871 76816527 -112463027 + L1P LINE L1 3711 4370 -1776 224 370 16 53 chr6 76816605 76816794 -112462760 + MIR SINE MIR 81 262 0 315 193 120 60 chr6 76816886 76817036 -112462518 + MER103 DNA DNA 1 159 -7 1478 208 3 10 chr6 76818056 76818349 -112461205 - AluJo SINE Alu -21 291 1 22 70 0 0 chr6 76818503 76818546 -112461008 + AT_rich Low_complexity Low_complexity 1 43 0 252 262 102 40 chr6 76819723 76819871 -112459683 + MER34 LTR ERV1 101 453 -254 286 250 15 0 chr6 76819935 76820003 -112459551 - MER39 LTR ERV1 -638 69 1 278 131 33 0 chr6 76820710 76820771 -112458783 + GA-rich Low_complexity Low_complexity 4 66 0 942 109 0 33 chr6 76820771 76820955 -112458599 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 2373 53 0 53 chr6 76821399 76821718 -112457836 - AluY SINE Alu -9 302 1 498 228 60 43 chr6 76823515 76823699 -112455855 + LTR68 LTR ERV1 220 406 -334 216 255 0 0 chr6 76823981 76824028 -112455526 + (CA)n Simple_repeat Simple_repeat 1 47 0 276 30 0 0 chr6 76824564 76824597 -112454957 + (TG)n Simple_repeat Simple_repeat 2 34 0 26 30 0 0 chr6 76824718 76824751 -112454803 + AT_rich Low_complexity Low_complexity 1 33 0 1694 139 10 14 chr6 76824808 76825103 -112454451 + L1MA3 LINE L1 6012 6305 0 52 58 0 0 chr6 76825548 76825635 -112453919 + AT_rich Low_complexity Low_complexity 1 87 0 860 221 70 109 chr6 76825663 76826075 -112453479 + MSTD LTR MaLR 1 396 0 23 33 0 0 chr6 76826187 76826217 -112453337 + AT_rich Low_complexity Low_complexity 1 30 0 2293 77 3 0 chr6 76826417 76826715 -112452839 - AluY SINE Alu -12 299 1 207 0 0 0 chr6 76827886 76827909 -112451645 + (T)n Simple_repeat Simple_repeat 1 23 0 24 67 0 0 chr6 76828556 76828601 -112450953 + AT_rich Low_complexity Low_complexity 1 45 0 202 133 27 40 chr6 76829844 76829919 -112449635 + (TA)n Simple_repeat Simple_repeat 2 75 0 21 36 0 0 chr6 76830324 76830352 -112449202 + AT_rich Low_complexity Low_complexity 1 28 0 1864 138 7 30 chr6 76834003 76834301 -112445253 - AluSx SINE Alu -21 291 1 1987 122 7 0 chr6 76834382 76834670 -112444884 - AluSg SINE Alu -20 290 1 1972 229 29 14 chr6 76834716 76835231 -112444323 + L1MB4 LINE L1 4617 5139 -1007 1476 219 41 25 chr6 76835289 76835681 -112443873 + L1MB4 LINE L1 5781 6178 -2 818 237 28 88 chr6 76835797 76836160 -112443394 + L1ME1 LINE L1 5708 6048 -118 1062 108 23 28 chr6 76836199 76836375 -112443179 + MER4A LTR ERV1 1 175 -489 1900 144 0 17 chr6 76836396 76836694 -112442860 + MER4A LTR ERV1 372 664 0 355 327 0 0 chr6 76836726 76836827 -112442727 - MER5A DNA MER1_type -80 109 9 429 243 193 6 chr6 76836922 76837103 -112442451 - MER5C DNA MER1_type -109 215 1 1334 152 13 17 chr6 76837344 76837575 -112441979 - MER30 DNA MER1_type 0 230 1 1677 182 3 23 chr6 76837579 76837886 -112441668 - MER50 LTR ERV1 0 734 434 * 1832 159 16 6 chr6 76837876 76838191 -112441363 - MER50 LTR ERV1 -416 318 1 2263 192 95 54 chr6 76838208 76838796 -112440758 + LTR9 LTR ERV1 1 612 0 620 137 21 0 chr6 76838810 76838905 -112440649 + HUERS-P3b LTR ERV1 15 111 -8808 8545 166 46 26 chr6 76838909 76840973 -112438581 + HUERS-P3b LTR ERV1 275 2329 -5089 530 230 0 0 chr6 76840973 76841073 -112438481 - LTR8 LTR ERV1 -591 100 1 25141 139 26 19 chr6 76841073 76845386 -112434168 + HUERS-P3b LTR ERV1 3073 7417 -1 2746 178 79 23 chr6 76845391 76845960 -112433594 + LTR9 LTR ERV1 11 611 -1 2302 91 0 10 chr6 76846277 76846585 -112432969 + AluSg SINE Alu 1 305 -5 2347 115 0 76 chr6 76847370 76847778 -112431776 - MER51B LTR ERV1 0 377 1 308 350 155 19 chr6 76848095 76848301 -112431253 - MIR SINE MIR -1 261 28 11437 243 41 23 chr6 76848955 76854879 -112424675 + L1PB4 LINE L1 835 6857 -2 1225 164 5 5 chr6 76855113 76855332 -112424222 - L1PA15 LINE L1 -4 6161 5943 195 42 0 0 chr6 76855348 76855372 -112424182 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1805 76 21 4 chr6 76855915 76856151 -112423403 - AluY SINE Alu -15 296 57 3661 88 0 6 chr6 76856151 76856653 -112422901 - L1PA8 LINE L1 -183 5989 5491 25 0 0 0 chr6 76857722 76857747 -112421807 + AT_rich Low_complexity Low_complexity 1 25 0 284 271 48 50 chr6 76858061 76858379 -112421175 - L1ME LINE L1 -320 6195 5893 786 155 11 66 chr6 76858382 76858563 -112420991 + FRAM SINE Alu 4 174 -2 362 323 48 44 chr6 76858571 76858819 -112420735 - L1ME LINE L1 -678 5900 5652 49 0 0 0 chr6 76860427 76860476 -112419078 + AT_rich Low_complexity Low_complexity 1 49 0 36441 98 11 11 chr6 76860778 76866928 -112412626 - L1PA6 LINE L1 -5 6149 11 25 0 0 0 chr6 76867449 76867474 -112412080 + AT_rich Low_complexity Low_complexity 1 25 0 437 319 38 19 chr6 76870076 76870236 -112409318 + MIR3 SINE MIR 11 173 -35 565 280 77 22 chr6 76871538 76871720 -112407834 - MIR3 SINE MIR -13 195 4 21 0 0 0 chr6 76873189 76873210 -112406344 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 76874228 76874250 -112405304 + AT_rich Low_complexity Low_complexity 1 22 0 1675 139 60 38 chr6 76874425 76874792 -112404762 + THE1C LTR MaLR 1 375 0 196 360 32 62 chr6 76874814 76875186 -112404368 + L2 LINE L2 2044 2404 -910 1966 141 10 10 chr6 76875209 76875521 -112404033 - AluSx SINE Alu 0 312 1 414 0 0 0 chr6 76875721 76875767 -112403787 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 235 333 15 0 chr6 76875773 76875839 -112403715 + L2 LINE L2 3242 3308 -5 27 0 0 0 chr6 76875937 76875964 -112403590 + AT_rich Low_complexity Low_complexity 1 27 0 4161 268 66 46 chr6 76876209 76878654 -112400900 - L1MDa LINE L1 -1560 4980 2490 287 49 24 0 chr6 76879099 76879140 -112400414 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 1716 161 63 38 chr6 76880403 76880769 -112398785 + THE1C LTR MaLR 1 375 0 182 356 0 23 chr6 76881167 76881254 -112398300 + L2 LINE L2 1336 1420 -1894 245 386 55 0 chr6 76882231 76882394 -112397160 + MIR3 SINE MIR 32 203 -5 23 0 0 0 chr6 76882740 76882763 -112396791 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr6 76882814 76882844 -112396710 + AT_rich Low_complexity Low_complexity 1 30 0 1918 222 102 25 chr6 76882849 76883332 -112396222 + Charlie1 DNA MER1_type 2067 2615 -146 1479 203 4 11 chr6 76883332 76883653 -112395901 - AluJb SINE Alu 0 322 4 1918 222 102 25 chr6 76883653 76883813 -112395741 + Charlie1 DNA MER1_type 2615 2761 0 323 392 72 26 chr6 76884116 76884422 -112395132 + L1MEc LINE L1 148 467 -5929 358 315 73 36 chr6 76884811 76885030 -112394524 + L1MEc LINE L1 654 880 -5325 180 97 0 0 chr6 76885057 76885088 -112394466 + (TG)n Simple_repeat Simple_repeat 1 31 0 444 37 0 0 chr6 76885088 76885142 -112394412 + (TA)n Simple_repeat Simple_repeat 1 54 0 334 252 53 53 chr6 76885219 76885350 -112394204 - L1MC4 LINE L1 -1323 6719 6589 2271 71 16 10 chr6 76885386 76885694 -112393860 + AluY SINE Alu 1 310 -1 527 304 65 39 chr6 76885852 76886267 -112393287 + L1MEc LINE L1 974 1399 -4818 21 36 0 0 chr6 76886904 76886932 -112392622 + AT_rich Low_complexity Low_complexity 1 28 0 2144 106 0 10 chr6 76887831 76888134 -112391420 - AluSx SINE Alu -11 301 2 245 229 43 0 chr6 76889398 76889468 -112390086 + HAL1 LINE L1 2277 2349 -158 1781 268 51 34 chr6 76889552 76890291 -112389263 - L1M4 LINE L1 -1338 4808 4057 1918 158 44 68 chr6 76890659 76891025 -112388529 + LTR18A LTR ERVL 1 357 0 438 296 26 9 chr6 76891816 76891931 -112387623 - MER5A DNA MER1_type -56 133 17 24 0 0 0 chr6 76892099 76892123 -112387431 + AT_rich Low_complexity Low_complexity 1 24 0 2396 72 3 3 chr6 76892678 76892984 -112386570 + AluY SINE Alu 1 306 -5 1706 225 50 0 chr6 76894198 76894621 -112384933 + L1MD3 LINE L1 7552 7995 0 817 289 119 46 chr6 76894726 76895179 -112384375 + L2 LINE L2 2828 3313 0 24 32 0 0 chr6 76895225 76895256 -112384298 + AT_rich Low_complexity Low_complexity 1 31 0 204 111 19 74 chr6 76896321 76896375 -112383179 + (AAATG)n Simple_repeat Simple_repeat 3 53 0 6705 72 7 1 chr6 76897555 76897906 -112381648 - L1PA8 LINE L1 0 6172 5825 2488 63 0 0 chr6 76897906 76898207 -112381347 - AluY SINE Alu -10 301 1 6705 72 7 1 chr6 76898207 76899476 -112380078 - L1PA8 LINE L1 -347 5825 4556 12336 127 8 8 chr6 76899476 76900127 -112379427 - L1PA8 LINE L1 -1814 4332 3683 192 40 0 0 chr6 76900127 76900152 -112379402 + (TTG)n Simple_repeat Simple_repeat 3 27 0 12336 127 8 8 chr6 76900152 76901487 -112378067 - L1PA8 LINE L1 -2463 3683 2345 820 231 22 4 chr6 76901590 76901815 -112377739 - L1 LINE L1 -1662 4484 4256 181 298 18 18 chr6 76902467 76902524 -112377030 - L2 LINE L2 -248 3065 3009 247 243 0 43 chr6 76902568 76902638 -112376916 + GA-rich Low_complexity Low_complexity 3 69 0 23 68 0 0 chr6 76903069 76903113 -112376441 + AT_rich Low_complexity Low_complexity 1 44 0 1470 198 27 16 chr6 76903172 76903490 -112376064 + MLT1A1 LTR MaLR 42 396 0 25 0 0 0 chr6 76903741 76903766 -112375788 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 76904929 76904951 -112374603 + AT_rich Low_complexity Low_complexity 1 22 0 901 236 56 58 chr6 76905915 76906001 -112373553 - Charlie1b DNA MER1_type -2378 383 298 2008 120 0 19 chr6 76906001 76906135 -112373419 + AluSg SINE Alu 1 136 -174 2433 54 0 7 chr6 76906135 76906433 -112373121 + AluY SINE Alu 1 296 -15 2008 120 0 19 chr6 76906433 76906606 -112372948 + AluSg SINE Alu 136 302 -8 901 236 56 58 chr6 76906606 76906896 -112372658 - Charlie1b DNA MER1_type -2463 298 8 390 306 47 35 chr6 76906906 76907076 -112372478 - MER5B DNA MER1_type -3 175 4 29 28 0 0 chr6 76907189 76907225 -112372329 + AT_rich Low_complexity Low_complexity 1 36 0 615 243 41 55 chr6 76907862 76908080 -112371474 + MER20 DNA MER1_type 1 215 -4 2837 176 20 17 chr6 76910469 76910878 -112368676 - L1 LINE L1 -901 5245 4832 2500 209 4 6 chr6 76910878 76911365 -112368189 - MER66B LTR ERV1 0 486 1 2837 176 20 17 chr6 76911365 76911542 -112368012 - L1 LINE L1 -1314 4832 4657 3170 160 28 28 chr6 76911549 76912192 -112367362 + L1MA6 LINE L1 5653 6295 -5 1619 230 39 3 chr6 76914099 76914481 -112365073 - MSTD LTR MaLR 0 396 1 22 56 0 0 chr6 76914672 76914708 -112364846 + AT_rich Low_complexity Low_complexity 1 36 0 240 264 0 0 chr6 76915875 76915928 -112363626 + (CA)n Simple_repeat Simple_repeat 1 53 0 201 175 0 105 chr6 76916106 76916163 -112363391 + polypurine Low_complexity Low_complexity 5 55 0 261 0 0 0 chr6 76916961 76916990 -112362564 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 7582 30 0 0 chr6 76917089 76918216 -112361338 - L1PA4 LINE L1 -3 6152 5027 21 0 0 0 chr6 76918641 76918662 -112360892 + AT_rich Low_complexity Low_complexity 1 21 0 249 291 42 30 chr6 76918697 76918862 -112360692 + L1ME LINE L1 5573 5739 -382 28 29 0 0 chr6 76918882 76918917 -112360637 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr6 76918954 76918977 -112360577 + AT_rich Low_complexity Low_complexity 1 23 0 233 380 5 20 chr6 76919336 76919451 -112360103 - MIR SINE MIR -82 126 10 233 167 19 0 chr6 76919590 76919644 -112359910 + (CA)n Simple_repeat Simple_repeat 1 55 0 6979 191 58 29 chr6 76920923 76922088 -112357466 - L1MCa LINE L1 -4137 2289 1159 2061 133 7 0 chr6 76922088 76922396 -112357158 + AluSx SINE Alu 1 310 -2 6979 191 58 29 chr6 76922396 76923355 -112356199 - L1MCa LINE L1 -5267 1159 26 2035 127 3 3 chr6 76923477 76923776 -112355778 + AluSx SINE Alu 1 299 -13 24 53 0 0 chr6 76924121 76924159 -112355395 + AT_rich Low_complexity Low_complexity 1 38 0 25 51 0 0 chr6 76925066 76925105 -112354449 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr6 76925458 76925487 -112354067 + AT_rich Low_complexity Low_complexity 1 29 0 273 293 98 12 chr6 76925636 76925800 -112353754 - L1ME LINE L1 -413 5708 5531 22 35 0 0 chr6 76925861 76925890 -112353664 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chr6 76926809 76926846 -112352708 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 76927035 76927058 -112352496 + AT_rich Low_complexity Low_complexity 1 23 0 2017 111 0 10 chr6 76927092 76927381 -112352173 + AluSx SINE Alu 1 286 -26 2014 166 13 23 chr6 76927473 76927864 -112351690 + L1MA7 LINE L1 5899 6285 -6 307 280 159 0 chr6 76928351 76928508 -112351046 - MIR SINE MIR -8 254 73 2411 65 0 0 chr6 76928662 76928969 -112350585 - AluY SINE Alu -1 310 4 25 31 0 0 chr6 76929009 76929041 -112350513 + AT_rich Low_complexity Low_complexity 1 32 0 2054 123 10 7 chr6 76930238 76930548 -112349006 + AluSx SINE Alu 1 311 -1 259 177 8 169 chr6 76930815 76930893 -112348661 - MER69 DNA AcHobo -15 2511 2461 2016 77 51 4 chr6 76930893 76931166 -112348388 - AluY SINE Alu -25 286 1 259 177 8 169 chr6 76931166 76931217 -112348337 - MER69 DNA AcHobo -65 2461 2403 21 0 0 0 chr6 76931745 76931766 -112347788 + AT_rich Low_complexity Low_complexity 1 21 0 11392 191 23 12 chr6 76931883 76932942 -112346612 - L1MA2 LINE L1 0 6304 5259 2081 168 70 0 chr6 76932942 76933342 -112346212 + MSTA LTR MaLR 1 428 0 11392 191 23 12 chr6 76933342 76935904 -112343650 - L1MA2 LINE L1 -1045 5259 2632 2205 179 31 9 chr6 76935904 76936323 -112343231 - MSTA LTR MaLR 0 428 1 5565 223 26 10 chr6 76936323 76937472 -112342082 - MSTA-int LTR MaLR 0 1651 485 3810 204 35 12 chr6 76937442 76938174 -112341380 + L1M1 LINE L1 72 820 -6745 * 535 292 153 5 chr6 76938326 76938535 -112341019 - L1MD1 LINE L1 -38 6204 5965 * 569 218 42 124 chr6 76938529 76938820 -112340734 - L1M4 LINE L1 -2365 3781 3519 2372 68 3 3 chr6 76938820 76939115 -112340439 + AluY SINE Alu 1 295 -16 569 218 42 124 chr6 76939115 76939153 -112340401 - L1M4 LINE L1 -2627 3519 3479 209 248 28 28 chr6 76939419 76939560 -112339994 + (TTTA)n Simple_repeat Simple_repeat 2 142 0 863 254 70 39 chr6 76939561 76939891 -112339663 + L1ME2 LINE L1 5816 6155 -9 1690 234 15 10 chr6 76940280 76940674 -112338880 - MSTD LTR MaLR 0 396 1 584 209 70 9 chr6 76940826 76941152 -112338402 + MSTD LTR MaLR 3 394 -2 24 67 0 0 chr6 76941186 76941231 -112338323 + AT_rich Low_complexity Low_complexity 1 45 0 27 29 0 0 chr6 76941687 76941721 -112337833 + AT_rich Low_complexity Low_complexity 1 34 0 2045 158 127 0 chr6 76941786 76942165 -112337389 + MSTA LTR MaLR 1 427 -1 2028 134 10 0 chr6 76942483 76942789 -112336765 - AluSx SINE Alu -1 311 3 1436 250 11 14 chr6 76943108 76943472 -112336082 + MLT1A1 LTR MaLR 1 363 -2 6315 249 43 19 chr6 76943476 76945046 -112334508 + MLT1A1-int LTR MaLR 3 1618 -117 2222 103 3 0 chr6 76945046 76945346 -112334208 + AluSx SINE Alu 1 301 -11 6315 249 43 19 chr6 76945346 76945467 -112334087 + MLT1A1-int LTR MaLR 1618 1735 0 1476 222 42 22 chr6 76945467 76945823 -112333731 + MLT1A1 LTR MaLR 1 363 -2 23 0 0 0 chr6 76946066 76946089 -112333465 + AT_rich Low_complexity Low_complexity 1 23 0 971 237 61 98 chr6 76946440 76946816 -112332738 + MER57A LTR ERV1 42 403 0 242 306 24 24 chr6 76947095 76947180 -112332374 + L2 LINE L2 3227 3311 -2 222 105 0 0 chr6 76947335 76947373 -112332181 + (TC)n Simple_repeat Simple_repeat 2 39 0 275 180 16 33 chr6 76948813 76948874 -112330680 + MLT1H1 LTR MaLR 57 116 -439 363 271 29 65 chr6 76950420 76950590 -112328964 + MIR SINE MIR 65 228 -34 284 47 0 23 chr6 76950631 76950674 -112328880 + (CA)n Simple_repeat Simple_repeat 1 42 0 1003 303 151 15 chr6 76954198 76954799 -112324755 + L2 LINE L2 1249 1931 -1383 1747 268 67 53 chr6 76954815 76956284 -112323270 - L1MCb LINE L1 -2863 3701 2103 1863 159 72 0 chr6 76956284 76956617 -112322937 - MER46B DNA MER2_type 0 236 5 1747 268 67 53 chr6 76956617 76956863 -112322691 - L1MCb LINE L1 -4461 2103 1862 436 258 65 65 chr6 76956854 76957071 -112322483 - L1MCb LINE L1 -5853 192 4 * 27 73 0 0 chr6 76958216 76958271 -112321283 + AT_rich Low_complexity Low_complexity 1 55 0 29 0 0 0 chr6 76958456 76958485 -112321069 + AT_rich Low_complexity Low_complexity 1 29 0 253 167 0 0 chr6 76960456 76960498 -112319056 + THE1C-int LTR MaLR 1326 1367 -213 26 64 0 0 chr6 76960632 76960679 -112318875 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr6 76960988 76961018 -112318536 + AT_rich Low_complexity Low_complexity 1 30 0 2040 150 16 44 chr6 76961120 76961506 -112318048 + THE1C LTR MaLR 1 375 0 9070 124 70 21 chr6 76961506 76963012 -112316542 + THE1C-int LTR MaLR 1 1580 0 2237 132 5 44 chr6 76963014 76963401 -112316153 + THE1C LTR MaLR 4 375 0 585 189 0 0 chr6 76963608 76963698 -112315856 + 5S rRNA rRNA 1 90 -31 2115 187 32 11 chr6 76964499 76964933 -112314621 - L1MA8 LINE L1 -275 6016 5574 1578 173 29 10 chr6 76965414 76965720 -112313834 - L1PA16 LINE L1 -3 6163 5852 323 176 11 0 chr6 76965798 76965889 -112313665 + (TA)n Simple_repeat Simple_repeat 2 93 0 466 305 96 0 chr6 76966630 76966827 -112312727 - MIR SINE MIR 0 262 47 26 50 0 0 chr6 76967566 76967606 -112311948 + AT_rich Low_complexity Low_complexity 1 40 0 307 200 0 0 chr6 76968094 76968154 -112311400 - MER53 DNA DNA -1 188 129 2138 98 28 3 chr6 76968310 76968596 -112310958 - AluSq SINE Alu -15 298 6 21 36 0 0 chr6 76968602 76968630 -112310924 + AT_rich Low_complexity Low_complexity 1 28 0 198 71 0 0 chr6 76969005 76969033 -112310521 + (TAAAA)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr6 76969562 76969586 -112309968 + AT_rich Low_complexity Low_complexity 1 24 0 227 316 18 0 chr6 76969681 76969738 -112309816 - L2 LINE L2 -61 3211 3154 198 71 0 0 chr6 76969845 76969873 -112309681 + (TG)n Simple_repeat Simple_repeat 1 28 0 213 367 37 9 chr6 76969882 76969991 -112309563 - L2 LINE L2 -488 2826 2715 21 0 0 0 chr6 76970498 76970519 -112309035 + AT_rich Low_complexity Low_complexity 1 21 0 251 297 0 0 chr6 76970528 76970592 -112308962 + GA-rich Low_complexity Low_complexity 4 67 0 3020 100 33 13 chr6 76971893 76972353 -112307201 + L1PA11 LINE L1 5706 6174 0 21 0 0 0 chr6 76973031 76973052 -112306502 + AT_rich Low_complexity Low_complexity 1 21 0 611 99 11 0 chr6 76973947 76974038 -112305516 + L1MA2 LINE L1 6211 6302 -2 24 0 0 0 chr6 76974039 76974063 -112305491 + AT_rich Low_complexity Low_complexity 1 24 0 4094 179 33 21 chr6 76974111 76975675 -112303879 - L1MA8 LINE L1 -5 7705 6113 2532 119 31 31 chr6 76975694 76976141 -112303413 - L1MA1 LINE L1 -4 6298 5852 5913 9 3 10 chr6 76976183 76976199 -112303355 - L1HS LINE L1 -3 6152 6137 333 75 30 15 chr6 76976199 76976266 -112303288 + (TTTTA)n Simple_repeat Simple_repeat 4 71 0 5913 9 3 10 chr6 76976266 76976934 -112302620 - L1HS LINE L1 -18 6137 5473 1744 251 45 0 chr6 76976913 76977379 -112302175 - L1MA8 LINE L1 -3208 4357 3871 * 966 248 0 5 chr6 76977379 76977585 -112301969 + MER2 DNA MER2_type 1 205 -140 205 49 0 49 chr6 76977585 76977626 -112301928 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 290 339 0 0 chr6 76977627 76977692 -112301862 + MER2 DNA MER2_type 281 345 0 9219 227 56 22 chr6 76977693 76978283 -112301271 - L1MA8 LINE L1 -1970 5595 5027 5304 147 39 4 chr6 76978283 76979871 -112299683 - L1PA15 LINE L1 -8 6157 4530 9219 227 56 22 chr6 76979871 76982268 -112297286 - L1MA8 LINE L1 -2538 5027 3177 6851 244 49 42 chr6 76982261 76982343 -112297211 - L1PA13 LINE L1 -4599 2188 2108 * 422 48 0 16 chr6 76982343 76982405 -112297149 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 6851 244 49 42 chr6 76982405 76984151 -112295403 - L1PA13 LINE L1 -4679 2108 347 2631 269 65 39 chr6 76984216 76985437 -112294117 - L1MA8 LINE L1 -4388 3177 1926 1288 307 42 38 chr6 76985523 76986096 -112293458 - L1MA8 LINE L1 -6449 1040 466 1943 208 40 14 chr6 76986777 76987273 -112292281 + L1MA8 LINE L1 5783 6291 0 232 211 35 0 chr6 76987276 76987333 -112292221 + GA-rich Low_complexity Low_complexity 4 62 0 233 293 17 0 chr6 76987752 76987810 -112291744 + L2 LINE L2 3251 3309 -4 1867 217 33 81 chr6 76987825 76988406 -112291148 - MLT2B3 LTR ERVL -1 553 1 180 0 0 0 chr6 76988765 76988785 -112290769 + (A)n Simple_repeat Simple_repeat 1 20 0 403 211 352 0 chr6 76988897 76989039 -112290515 + MLT1D LTR MaLR 314 505 0 1724 133 85 28 chr6 76989524 76989877 -112289677 + THE1C LTR MaLR 3 375 0 24 85 0 0 chr6 76989926 76989985 -112289569 + AT_rich Low_complexity Low_complexity 1 59 0 258 389 20 0 chr6 76993938 76994087 -112285467 - MIR SINE MIR -58 204 53 220 278 0 0 chr6 76994348 76994402 -112285152 + (CATAT)n Simple_repeat Simple_repeat 4 57 0 216 0 0 0 chr6 76994651 76994675 -112284879 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 10257 53 6 79 chr6 76994675 76996150 -112283404 - SVA Other Other -17 1369 2 180 0 0 0 chr6 76996151 76996171 -112283383 + (GGGAGA)n Simple_repeat Simple_repeat 2 21 0 229 290 70 20 chr6 76996231 76996331 -112283223 - L2 LINE L2 0 3313 3209 2184 203 14 33 chr6 76996368 76996857 -112282697 - MER31A LTR ERV1 0 485 6 566 233 15 8 chr6 76996882 76997015 -112282539 + L1M4 LINE L1 16 149 -6393 2274 226 66 79 chr6 76997019 76997852 -112281702 + L1M4 LINE L1 372 1193 -5349 1478 221 35 30 chr6 76997847 76998300 -112281254 + L1MB7 LINE L1 5735 6183 -1 * 2636 200 37 96 chr6 76998416 76999238 -112280316 - MER21A LTR ERV1 -19 912 187 204 40 0 0 chr6 76999256 76999281 -112280273 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 636 154 140 21 chr6 76999281 76999308 -112280246 - MER21A LTR ERV1 -771 160 138 207 0 0 0 chr6 76999308 76999331 -112280223 + (GA)n Simple_repeat Simple_repeat 2 24 0 636 154 140 21 chr6 76999331 76999446 -112280108 - MER21A LTR ERV1 -793 138 1 1942 188 0 19 chr6 76999677 77000049 -112279505 - MLT1A1 LTR MaLR 0 365 1 539 40 0 27 chr6 77000069 77000144 -112279410 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 21 36 0 0 chr6 77001748 77001776 -112277778 + AT_rich Low_complexity Low_complexity 1 28 0 1375 291 23 57 chr6 77002968 77003583 -112275971 + L1MEc LINE L1 45 638 -5758 1390 204 10 43 chr6 77003839 77004138 -112275416 - AluJo SINE Alu -22 290 2 558 238 85 11 chr6 77004364 77004553 -112275001 + L1MC/D LINE L1 5446 5648 -711 788 230 109 45 chr6 77004613 77004944 -112274610 - L1MEc LINE L1 -4616 2105 1754 * 1932 43 0 0 chr6 77004935 77005168 -112274386 - L1P3 LINE L1 -409 5745 5513 848 271 129 15 chr6 77005187 77005714 -112273840 - L1MEc LINE L1 -4849 1691 1105 519 194 0 0 chr6 77005736 77005834 -112273720 + FLAM_A SINE Alu 41 138 -4 1926 46 50 4 chr6 77005947 77006188 -112273366 - AluY SINE Alu -59 252 1 23 33 0 0 chr6 77006750 77006780 -112272774 + AT_rich Low_complexity Low_complexity 1 30 0 246 32 0 0 chr6 77006939 77006954 -112272600 + (CA)n Simple_repeat Simple_repeat 1 46 0 246 32 0 0 chr6 77006954 77006985 -112272569 + (CA)n Simple_repeat Simple_repeat 2 32 0 496 299 15 54 chr6 77007162 77007366 -112272188 - L1MEc LINE L1 -6330 210 15 * 1407 271 42 20 chr6 77007344 77007886 -112271668 + L1ME1 LINE L1 5608 6161 -5 241 259 17 0 chr6 77008791 77008849 -112270705 + L2 LINE L2 3250 3308 -5 188 284 54 0 chr6 77009414 77009488 -112270066 + MIR SINE MIR 77 154 -108 1838 231 14 7 chr6 77009933 77010348 -112269206 - L1MA9 LINE L1 -153 6159 5742 256 214 0 82 chr6 77011615 77011713 -112267841 + L1MC4 LINE L1 6614 6703 -1339 225 151 0 38 chr6 77011683 77011736 -112267818 - L1MC4 LINE L1 -1339 6703 6653 * 261 0 0 0 chr6 77011792 77011821 -112267733 + (TG)n Simple_repeat Simple_repeat 2 30 0 567 275 6 6 chr6 77011887 77012047 -112267507 - MER8 DNA MER2_type -79 160 1 362 344 78 25 chr6 77012090 77012450 -112267104 + L1ME4a LINE L1 5592 5970 -151 23 33 0 0 chr6 77012450 77012480 -112267074 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr6 77012574 77012602 -112266952 + AT_rich Low_complexity Low_complexity 1 28 0 243 214 0 0 chr6 77013316 77013386 -112266168 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 24 0 0 0 chr6 77013984 77014008 -112265546 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr6 77014039 77014077 -112265477 + AT_rich Low_complexity Low_complexity 1 38 0 2597 230 83 78 chr6 77014090 77015222 -112264332 - L1MC4 LINE L1 -1147 6895 5758 4458 176 12 14 chr6 77015224 77017283 -112262271 + L1MA4 LINE L1 4094 6294 -6 882 213 80 4 chr6 77017283 77017508 -112262046 - L1MC4 LINE L1 -2036 5749 5508 379 235 25 0 chr6 77017527 77017646 -112261908 - L1MC4 LINE L1 -2289 3857 3736 822 256 56 21 chr6 77017682 77018527 -112261027 + L1M4 LINE L1 2832 3777 -2369 32 0 0 0 chr6 77018833 77018865 -112260689 + AT_rich Low_complexity Low_complexity 1 32 0 12463 222 18 39 chr6 77018900 77019252 -112260302 - L1PB3 LINE L1 -1 6210 5852 369 0 0 0 chr6 77019252 77019293 -112260261 + (TG)n Simple_repeat Simple_repeat 2 42 0 12463 222 18 39 chr6 77019293 77021594 -112257960 - L1PB3 LINE L1 -359 5852 3668 198 71 0 0 chr6 77021594 77021622 -112257932 + (TGG)n Simple_repeat Simple_repeat 1 28 0 12463 222 18 39 chr6 77021622 77023742 -112255812 - L1PB3 LINE L1 -2543 3668 1504 3550 194 15 10 chr6 77023730 77024410 -112255144 - L1PB3 LINE L1 -5521 683 1 * 3152 311 32 35 chr6 77024379 77026018 -112253536 - L1PBa LINE L1 -5227 1636 3 * 22 80 0 0 chr6 77026468 77026518 -112253036 + AT_rich Low_complexity Low_complexity 1 50 0 214 293 151 9 chr6 77029143 77029249 -112250305 - MIR SINE MIR -14 248 128 236 284 12 0 chr6 77029676 77029757 -112249797 + (TA)n Simple_repeat Simple_repeat 2 83 0 29 0 0 0 chr6 77030180 77030209 -112249345 + AT_rich Low_complexity Low_complexity 1 29 0 263 388 57 29 chr6 77030209 77030544 -112249010 + L2 LINE L2 2707 3044 -228 368 268 127 21 chr6 77031093 77031235 -112248319 - MIR SINE MIR -77 185 29 1718 208 75 10 chr6 77032158 77032557 -112246997 - MSTB LTR MaLR -1 425 1 21 36 0 0 chr6 77033142 77033170 -112246384 + AT_rich Low_complexity Low_complexity 1 28 0 1027 357 44 39 chr6 77033413 77033982 -112245572 + MER115 DNA AcHobo 120 691 -2 22 35 0 0 chr6 77034007 77034036 -112245518 + AT_rich Low_complexity Low_complexity 1 29 0 1187 369 23 28 chr6 77034621 77035234 -112244320 + L1PA13 LINE L1 788 1397 -6177 491 292 15 22 chr6 77035317 77035518 -112244036 + L1PA13 LINE L1 2077 2306 -5268 4148 124 21 48 chr6 77035965 77036673 -112242881 + LTR8 LTR ERV1 3 691 0 1937 185 14 34 chr6 77036673 77037424 -112242130 + HUERS-P1 LTR ERV1 1 819 -5444 1551 241 77 106 chr6 77037426 77038347 -112241207 - LTR1B LTR ERV1 -40 980 1 1892 161 20 15 chr6 77038349 77038690 -112240864 - LTR1B-int LTR ERV1 -1 7090 6748 28582 174 19 8 chr6 77038700 77044061 -112235493 - LTR1B-int LTR ERV1 -494 6597 948 2469 57 10 0 chr6 77044074 77044374 -112235180 - AluY SINE Alu -6 305 3 1404 239 97 42 chr6 77044558 77045044 -112234510 - LTR1B-int LTR ERV1 -2518 597 182 710 198 124 176 chr6 77045225 77045755 -112233799 - LTR28 LTR ERV1 0 1020 518 2159 244 15 22 chr6 77045786 77046331 -112233223 + MER87 LTR ERV1 1 541 0 25 0 0 0 chr6 77046386 77046411 -112233143 + AT_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr6 77046979 77047021 -112232533 + AT_rich Low_complexity Low_complexity 1 42 0 33 43 0 0 chr6 77047232 77047279 -112232275 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr6 77048415 77048444 -112231110 + AT_rich Low_complexity Low_complexity 1 29 0 4012 201 59 20 chr6 77048677 77050031 -112229523 - L1MA9 LINE L1 -1 6311 4897 4307 188 21 14 chr6 77050040 77050893 -112228661 + Tigger1 DNA MER2_type 24 882 -1536 6709 238 37 19 chr6 77050893 77052812 -112226742 + L1MA3 LINE L1 2242 4195 -1951 5982 147 12 22 chr6 77052815 77054043 -112225511 + L1MA3 LINE L1 5084 6300 -5 1147 181 51 0 chr6 77054047 77054263 -112225291 + Tigger1 DNA MER2_type 869 1095 -1323 5597 157 26 5 chr6 77054263 77055252 -112224302 + Tigger1 DNA MER2_type 1409 2418 0 4297 206 95 6 chr6 77055252 77056399 -112223155 - L1MA9 LINE L1 -1249 4897 3649 279 54 0 0 chr6 77056577 77056614 -112222940 + (CA)n Simple_repeat Simple_repeat 1 37 0 180 271 178 28 chr6 77056895 77057002 -112222552 + L2 LINE L2 3186 3308 -5 290 298 157 31 chr6 77057318 77057520 -112222034 - MIR SINE MIR -10 252 30 232 206 63 16 chr6 77057675 77057738 -112221816 - L1 LINE L1 -1884 4262 4197 2600 285 53 16 chr6 77057992 77058877 -112220677 + L1MCb LINE L1 1 918 -5127 1853 220 88 102 chr6 77058905 77059723 -112219831 - LTR1B LTR ERV1 -13 813 7 1145 228 44 25 chr6 77059794 77060158 -112219396 + L1MCb LINE L1 948 1318 -5246 3373 116 22 2 chr6 77060160 77060653 -112218901 - LTR10B LTR ERV1 0 505 3 9403 249 53 34 chr6 77060659 77063583 -112215971 - HERVI LTR ERV1 -2 7783 4803 3530 292 41 18 chr6 77063575 77065003 -112214551 - HERVI LTR ERV1 -5386 2399 897 * 37085 90 14 8 chr6 77065023 77068613 -112210941 + L1PA6 LINE L1 11 3650 -2504 2698 39 0 0 chr6 77068613 77068943 -112210611 + SVA Other Other 1070 1386 0 37085 90 14 8 chr6 77068943 77071463 -112208091 + L1PA6 LINE L1 3650 6154 0 1359 188 22 69 chr6 77071477 77071861 -112207693 - HERVI LTR ERV1 -5815 834 555 941 244 98 4 chr6 77071968 77072222 -112207332 - HERVI LTR ERV1 -6366 283 6 3078 141 26 6 chr6 77072224 77072719 -112206835 - LTR10B LTR ERV1 0 505 1 520 257 57 14 chr6 77072720 77072930 -112206624 + L1MCb LINE L1 1315 1533 -5031 22 35 0 0 chr6 77072970 77072999 -112206555 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 77073372 77073393 -112206161 + AT_rich Low_complexity Low_complexity 1 21 0 440 277 68 66 chr6 77074810 77075251 -112204303 + L1MCb LINE L1 2031 2472 -4273 415 273 7 35 chr6 77075327 77075474 -112204080 - MIR SINE MIR -62 146 20 938 282 41 29 chr6 77075678 77076316 -112203238 + L1MCb LINE L1 2410 3019 -3545 331 323 50 6 chr6 77076359 77076520 -112203034 + L1MEc LINE L1 83 250 -6146 217 440 21 5 chr6 77078141 77078334 -112201220 + L2 LINE L2 1001 1196 -2118 905 210 6 0 chr6 77078432 77078599 -112200955 - FAM SINE Alu -6 169 2 365 306 155 9 chr6 77079830 77080062 -112199492 - MLT1J1 LTR MaLR 0 446 181 26 74 0 0 chr6 77080930 77080984 -112198570 + AT_rich Low_complexity Low_complexity 1 54 0 234 143 39 0 chr6 77081031 77081108 -112198446 + (TA)n Simple_repeat Simple_repeat 2 81 0 238 262 148 16 chr6 77081914 77082036 -112197518 - HAL1 LINE L1 -2284 223 86 267 355 17 45 chr6 77082780 77083070 -112196484 + Charlie4 DNA MER1_type 1258 1539 -422 22 70 0 0 chr6 77083547 77083590 -112195964 + AT_rich Low_complexity Low_complexity 1 43 0 249 294 178 29 chr6 77083656 77083931 -112195623 + L2 LINE L2 584 899 -2415 31 88 0 0 chr6 77084019 77084099 -112195455 + AT_rich Low_complexity Low_complexity 1 80 0 240 330 0 0 chr6 77084165 77084256 -112195298 + (TA)n Simple_repeat Simple_repeat 1 91 0 723 229 40 35 chr6 77084755 77084956 -112194598 - MER20 DNA MER1_type 0 219 18 638 73 0 21 chr6 77087484 77087580 -112191974 - L1PB3 LINE L1 -1 6153 6060 1734 164 42 0 chr6 77088547 77088810 -112190744 + AluSx SINE Alu 5 278 -34 226 0 0 56 chr6 77088812 77088848 -112190706 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 187 290 32 32 chr6 77089034 77089096 -112190458 - L2 LINE L2 -7 3306 3245 239 222 101 10 chr6 77090154 77090253 -112189301 + MER53 DNA DNA 79 186 -3 22 56 0 0 chr6 77090496 77090532 -112189022 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr6 77090695 77090738 -112188816 + AT_rich Low_complexity Low_complexity 1 43 0 284 265 66 15 chr6 77090756 77090892 -112188662 - L1MC4a LINE L1 -1851 5957 5815 532 144 21 0 chr6 77090893 77090990 -112188564 - L1MA10 LINE L1 -2 6332 6234 1900 242 84 42 chr6 77090997 77091521 -112188033 - MER52A LTR ERV1 -1 1754 1209 1174 200 41 123 chr6 77091497 77092242 -112187312 - MER52A LTR ERV1 -304 1349 531 * 5577 126 7 2 chr6 77092248 77093069 -112186485 - MER52-int LTR ERV1 -4 7087 6263 2211 130 11 8 chr6 77093069 77093423 -112186131 + THE1A LTR MaLR 1 355 0 7026 116 43 10 chr6 77093423 77094487 -112185067 + THE1A-int LTR MaLR 1 1099 -481 1151 225 66 39 chr6 77095114 77095478 -112184076 - MLT1A2 LTR MaLR 0 374 1 321 351 45 29 chr6 77095580 77095822 -112183732 + L1ME LINE L1 3628 3873 -2273 21 0 0 0 chr6 77095882 77095903 -112183651 + AT_rich Low_complexity Low_complexity 1 21 0 305 193 71 22 chr6 77096135 77096453 -112183101 + (TA)n Simple_repeat Simple_repeat 1 333 0 301 268 68 50 chr6 77096516 77096736 -112182818 + L1ME LINE L1 5380 5603 -561 26 30 0 0 chr6 77097140 77097173 -112182381 + AT_rich Low_complexity Low_complexity 1 33 0 31 76 0 0 chr6 77097350 77097416 -112182138 + AT_rich Low_complexity Low_complexity 1 66 0 23 54 0 0 chr6 77097570 77097607 -112181947 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr6 77097675 77097697 -112181857 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 77098066 77098087 -112181467 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr6 77098128 77098160 -112181394 + AT_rich Low_complexity Low_complexity 1 32 0 802 156 0 0 chr6 77098355 77098483 -112181071 + FLAM_C SINE Alu 2 129 -4 326 235 0 25 chr6 77098738 77098857 -112180697 + (TATG)n Simple_repeat Simple_repeat 2 117 0 180 0 0 0 chr6 77098857 77098877 -112180677 + (CA)n Simple_repeat Simple_repeat 2 21 0 253 336 102 47 chr6 77099437 77099910 -112179644 + L1MEd LINE L1 252 750 -5369 321 68 0 0 chr6 77100088 77100132 -112179422 + (TG)n Simple_repeat Simple_repeat 1 44 0 607 239 47 26 chr6 77100414 77100610 -112178944 - MER63A DNA MER1_type -1 209 11 260 185 31 0 chr6 77100752 77100817 -112178737 + (TA)n Simple_repeat Simple_repeat 1 67 0 361 324 39 19 chr6 77100954 77101315 -112178239 + L1MEd LINE L1 2130 2497 -3632 327 273 52 29 chr6 77101583 77101755 -112177799 + L1MEd LINE L1 2387 2562 -3567 305 256 78 73 chr6 77101930 77102149 -112177405 + HAL1 LINE L1 842 1061 -1446 27 73 0 0 chr6 77102450 77102505 -112177049 + AT_rich Low_complexity Low_complexity 1 55 0 22 88 0 0 chr6 77102676 77102733 -112176821 + AT_rich Low_complexity Low_complexity 1 57 0 40 37 0 0 chr6 77103031 77103085 -112176469 + AT_rich Low_complexity Low_complexity 1 54 0 24 0 0 0 chr6 77103164 77103188 -112176366 + AT_rich Low_complexity Low_complexity 1 24 0 248 100 0 0 chr6 77104414 77104454 -112175100 + L1PBa LINE L1 50 89 -6774 2485 181 24 12 chr6 77104457 77105432 -112174122 - L1PBb LINE L1 -4668 1536 549 5113 246 34 22 chr6 77105628 77107667 -112171887 + L1M2 LINE L1 2152 4298 -2550 * 16354 141 62 10 chr6 77107663 77110667 -112168887 - L1PBa LINE L1 -3697 3165 3 22 0 0 0 chr6 77110760 77110782 -112168772 + AT_rich Low_complexity Low_complexity 1 22 0 252 160 73 27 chr6 77110798 77110948 -112168606 + (TA)n Simple_repeat Simple_repeat 2 158 0 244 160 38 19 chr6 77110957 77111063 -112168491 + (TTATA)n Simple_repeat Simple_repeat 5 112 0 257 170 60 10 chr6 77111078 77111178 -112168376 + (TA)n Simple_repeat Simple_repeat 1 105 0 21 0 0 0 chr6 77111464 77111485 -112168069 + AT_rich Low_complexity Low_complexity 1 21 0 336 48 0 0 chr6 77111804 77111846 -112167708 + (CA)n Simple_repeat Simple_repeat 1 42 0 223 284 12 62 chr6 77111863 77111944 -112167610 - L2 LINE L2 -10 3303 3227 381 223 11 0 chr6 77112007 77112101 -112167453 + MER53 DNA DNA 1 95 -94 26 0 0 0 chr6 77112142 77112168 -112167386 + AT_rich Low_complexity Low_complexity 1 26 0 499 329 228 15 chr6 77112251 77112801 -112166753 - L2 LINE L2 -263 3050 2386 264 327 96 29 chr6 77113019 77113123 -112166431 + L2 LINE L2 3125 3235 -37 14708 214 49 21 chr6 77114026 77118727 -112160827 + L1PA12 LINE L1 7 5902 -1682 3247 133 0 6 chr6 77118727 77119199 -112160355 + LTR9 LTR ERV1 1 469 -143 47 0 0 0 chr6 77119199 77119246 -112160308 + AT_rich Low_complexity Low_complexity 1 47 0 3837 255 46 18 chr6 77119266 77119342 -112160212 - L1M4 LINE L1 -994 5152 5080 8834 38 0 0 chr6 77119342 77121185 -112158369 - L1PA4 LINE L1 0 6155 4309 3837 255 46 18 chr6 77121185 77122480 -112157074 - L1M4 LINE L1 -1066 5080 3743 23 0 0 0 chr6 77122591 77122614 -112156940 + AT_rich Low_complexity Low_complexity 1 23 0 2519 45 0 0 chr6 77123584 77123875 -112155679 + AluY SINE Alu 13 303 -8 34 55 0 0 chr6 77124056 77124111 -112155443 + AT_rich Low_complexity Low_complexity 1 55 0 1875 201 29 11 chr6 77124111 77124488 -112155066 + MER7C DNA MER2_type 1 384 -218 6369 190 165 28 chr6 77124488 77125993 -112153561 + MER52A LTR ERV1 1 1712 -43 1970 49 4 0 chr6 77126003 77126249 -112153305 + L1PA4 LINE L1 5909 6155 0 622 174 28 82 chr6 77126253 77126435 -112153119 + MLT1B LTR MaLR 157 344 -46 3554 103 2 6 chr6 77126712 77127224 -112152330 - MER9 LTR ERVK 0 511 2 518 345 10 5 chr6 77127471 77127680 -112151874 - MER63A DNA MER1_type 0 210 1 21 36 0 0 chr6 77128098 77128126 -112151428 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr6 77128167 77128196 -112151358 + (CA)n Simple_repeat Simple_repeat 2 30 0 709 134 0 9 chr6 77128298 77128410 -112151144 - MER9 LTR ERVK 0 511 401 261 0 0 0 chr6 77128418 77128447 -112151107 + (TG)n Simple_repeat Simple_repeat 2 30 0 213 121 0 0 chr6 77128459 77128492 -112151062 + (CA)n Simple_repeat Simple_repeat 2 34 0 216 265 157 60 chr6 77128556 77128722 -112150832 + MIR SINE MIR 49 230 -32 1837 144 188 6 chr6 77128790 77129152 -112150402 + MSTA LTR MaLR 1 428 0 2456 78 0 0 chr6 77130926 77131233 -112148321 + AluY SINE Alu 1 307 -4 616 307 133 32 chr6 77131523 77131995 -112147559 - L2 LINE L2 -22 3291 2773 1714 46 29 25 chr6 77132367 77132607 -112146947 - L1PA4 LINE L1 -1 6154 5914 1820 125 50 4 chr6 77134172 77134453 -112145101 + AluSx SINE Alu 1 294 -18 22 0 0 0 chr6 77134676 77134698 -112144856 + AT_rich Low_complexity Low_complexity 1 22 0 497 236 154 18 chr6 77136043 77136263 -112143291 - MER5C DNA MER1_type 0 324 75 1335 147 13 17 chr6 77137146 77137378 -112142176 + THE1C LTR MaLR 145 375 0 988 343 85 48 chr6 77137474 77137959 -112141595 - HERVL LTR ERVL -1110 4544 4078 2003 154 0 0 chr6 77137959 77138258 -112141296 + AluSx SINE Alu 1 299 -13 988 343 85 48 chr6 77138258 77138741 -112140813 - HERVL LTR ERVL -1576 4078 3541 387 0 0 0 chr6 77138759 77138802 -112140752 + (TG)n Simple_repeat Simple_repeat 2 44 0 1910 131 0 4 chr6 77138810 77139085 -112140469 - AluY SINE Alu -35 276 3 1744 231 25 50 chr6 77139340 77140158 -112139396 - Charlie1 DNA MER1_type 0 2761 1905 192 364 47 23 chr6 77140879 77141008 -112138546 + L2 LINE L2 3182 3313 0 867 200 28 42 chr6 77142039 77142254 -112137300 - MER20 DNA MER1_type -1 218 7 216 319 191 11 chr6 77142429 77142523 -112137031 - MER5A DNA MER1_type -3 186 76 475 272 8 32 chr6 77143401 77143526 -112136028 + L2 LINE L2 3192 3313 0 1368 299 93 34 chr6 77143620 77144326 -112135228 + L2 LINE L2 1528 2275 -1039 2118 125 0 0 chr6 77144502 77144798 -112134756 - AluSg SINE Alu -14 296 1 1997 71 8 0 chr6 77145529 77145782 -112133772 - AluY SINE Alu -12 299 45 241 244 67 56 chr6 77145901 77145991 -112133563 + L2 LINE L2 2283 2373 -941 873 319 149 3 chr6 77146042 77146424 -112133130 + L2 LINE L2 2370 2807 -507 211 185 0 37 chr6 77147517 77147571 -112131983 + A-rich Low_complexity Low_complexity 1 52 0 1564 231 27 35 chr6 77147843 77148332 -112131222 + MER31A LTR ERV1 1 485 0 208 354 0 0 chr6 77148893 77148958 -112130596 - L2 LINE L2 -1 3271 3207 216 0 0 0 chr6 77149035 77149059 -112130495 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr6 77149204 77149225 -112130329 + AT_rich Low_complexity Low_complexity 1 21 0 555 273 23 17 chr6 77149882 77150042 -112129512 + MLT1A2 LTR MaLR 1 164 -210 2299 102 0 6 chr6 77150042 77150357 -112129197 + AluSp SINE Alu 1 313 0 555 273 23 17 chr6 77150357 77150368 -112129186 + MLT1A2 LTR MaLR 164 173 -201 845 220 40 148 chr6 77150399 77150622 -112128932 + MLT1A2 LTR MaLR 181 370 -4 25 51 0 0 chr6 77152485 77152524 -112127030 + AT_rich Low_complexity Low_complexity 1 39 0 28 0 0 0 chr6 77152608 77152636 -112126918 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr6 77153069 77153104 -112126450 + AT_rich Low_complexity Low_complexity 1 35 0 1911 266 61 34 chr6 77153481 77153921 -112125633 - L1ME1 LINE L1 0 6166 5696 2536 62 0 0 chr6 77153921 77154230 -112125324 + AluY SINE Alu 1 309 -2 1911 266 61 34 chr6 77154230 77154527 -112125027 - L1ME1 LINE L1 -470 5696 5409 1585 283 74 33 chr6 77155058 77156124 -112123430 + L1ME2 LINE L1 4168 5277 -869 3262 98 44 24 chr6 77156136 77156637 -112122917 + MER9 LTR ERVK 1 511 0 1329 66 0 0 chr6 77156637 77156818 -112122736 + HERVK9 LTR ERVK 1 181 -5735 2347 118 46 29 chr6 77156818 77157235 -112122319 + L1PA13 LINE L1 5737 6160 -3 1527 279 67 36 chr6 77157251 77158085 -112121469 + L1ME2 LINE L1 5282 6141 -23 614 97 0 0 chr6 77158330 77158423 -112121131 - L1MA6 LINE L1 0 6300 6208 2217 113 0 0 chr6 77158604 77158906 -112120648 - AluSc SINE Alu -6 303 2 458 301 107 58 chr6 77159832 77160244 -112119310 + LTR33A LTR ERVL 3 434 -89 337 253 66 0 chr6 77160751 77160842 -112118712 - MER94 DNA DNA -21 113 17 1976 147 3 0 chr6 77160926 77161225 -112118329 - AluSq SINE Alu -13 300 1 267 314 46 39 chr6 77161794 77161947 -112117607 - L2 LINE L2 -1 3312 3159 1270 216 76 0 chr6 77163905 77164169 -112115385 + AluJo SINE Alu 11 294 -18 21 0 0 0 chr6 77164281 77164302 -112115252 + AT_rich Low_complexity Low_complexity 1 21 0 1623 168 30 10 chr6 77164337 77164634 -112114920 + AluJo SINE Alu 1 303 -9 241 279 87 58 chr6 77165794 77166002 -112113552 + MIR SINE MIR 2 215 -47 2257 99 0 10 chr6 77168733 77169046 -112110508 + AluSg SINE Alu 1 310 0 188 341 44 11 chr6 77169145 77169236 -112110318 - MIR SINE MIR -66 142 49 211 189 0 0 chr6 77169828 77169865 -112109689 + (TG)n Simple_repeat Simple_repeat 2 38 0 282 222 0 28 chr6 77170767 77170812 -112108742 + GA-rich Low_complexity Low_complexity 3 47 -25 1850 198 40 26 chr6 77170812 77171232 -112108322 - MSTB LTR MaLR 0 426 1 282 222 0 28 chr6 77171232 77171258 -112108296 + GA-rich Low_complexity Low_complexity 47 72 0 35 0 0 0 chr6 77172363 77172398 -112107156 + AT_rich Low_complexity Low_complexity 1 35 0 203 103 26 0 chr6 77172443 77172482 -112107072 + (CA)n Simple_repeat Simple_repeat 1 40 0 2298 79 3 0 chr6 77173050 77173341 -112106213 + AluY SINE Alu 1 292 -19 25 0 0 0 chr6 77173359 77173384 -112106170 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr6 77174109 77174130 -112105424 + (CA)n Simple_repeat Simple_repeat 2 22 0 271 276 41 0 chr6 77174232 77174355 -112105199 - L1M4 LINE L1 -1094 5052 4925 1720 285 100 34 chr6 77174397 77175585 -112103969 - L1M4 LINE L1 -1588 4558 3292 23 92 0 0 chr6 77176522 77176587 -112102967 + AT_rich Low_complexity Low_complexity 1 65 0 35 41 0 0 chr6 77177463 77177512 -112102042 + AT_rich Low_complexity Low_complexity 1 49 0 3422 284 58 45 chr6 77178621 77180522 -112099032 + L1MDa LINE L1 69 2078 -4462 1060 99 26 0 chr6 77180578 77180729 -112098825 - AluSg/x SINE Alu 0 309 155 748 240 67 8 chr6 77180729 77180983 -112098571 + L1MDa LINE L1 2146 2414 -4126 1716 279 46 35 chr6 77180997 77181315 -112098239 + L1MDa LINE L1 2504 2817 -3723 1947 141 10 7 chr6 77181315 77181613 -112097941 + AluSx SINE Alu 1 299 -13 1716 279 46 35 chr6 77181613 77182062 -112097492 + L1MDa LINE L1 2817 3279 -3261 2062 148 38 3 chr6 77182066 77182410 -112097144 + MER46B DNA MER2_type 6 236 0 2610 17 0 0 chr6 77182434 77182749 -112096805 + AluYb8 SINE Alu 1 315 0 379 247 120 43 chr6 77182751 77182937 -112096617 + L1MDa LINE L1 3367 3586 -2954 1659 140 31 71 chr6 77182937 77183259 -112096295 + AluSx SINE Alu 1 309 -3 379 247 120 43 chr6 77183259 77183372 -112096182 + L1MDa LINE L1 3586 3689 -2851 25 65 0 0 chr6 77183532 77183578 -112095976 + AT_rich Low_complexity Low_complexity 1 46 0 909 235 67 84 chr6 77183811 77184348 -112095206 - Charlie1 DNA MER1_type -5 2756 2229 260 365 24 24 chr6 77184507 77184633 -112094921 - MIR SINE MIR -133 129 4 1728 177 0 10 chr6 77184726 77185026 -112094528 + AluJo SINE Alu 5 301 -11 2035 135 0 10 chr6 77185280 77185592 -112093962 - AluSx SINE Alu -3 309 1 1230 300 65 43 chr6 77186710 77187030 -112092524 + MER69 DNA AcHobo 326 637 -1889 2225 85 0 41 chr6 77187030 77187346 -112092208 + AluY SINE Alu 1 303 -8 1230 300 65 43 chr6 77187346 77187702 -112091852 + MER69 DNA AcHobo 637 1017 -1509 2106 108 0 0 chr6 77187704 77187983 -112091571 + AluSc SINE Alu 1 279 -30 225 0 0 0 chr6 77187986 77188011 -112091543 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1056 97 0 7 chr6 77188011 77188156 -112091398 + AluSg/x SINE Alu 156 299 -11 1429 196 22 53 chr6 77188461 77188782 -112090772 - AluJo SINE Alu -1 311 1 281 250 0 16 chr6 77190214 77190278 -112089276 + MIR3 SINE MIR 97 159 -49 312 351 32 7 chr6 77190791 77190945 -112088609 + LTR16A1 LTR ERVL 300 457 0 1391 230 31 23 chr6 77191825 77192212 -112087342 + MLT1B LTR MaLR 1 390 0 315 0 0 0 chr6 77192906 77192941 -112086613 + (TG)n Simple_repeat Simple_repeat 2 36 0 184 186 34 0 chr6 77192942 77193001 -112086553 + GA-rich Low_complexity Low_complexity 2 62 0 228 331 81 16 chr6 77194412 77194536 -112085018 - L3 LINE CR1 -9 1568 1437 224 239 42 0 chr6 77194543 77194614 -112084940 + (TTTA)n Simple_repeat Simple_repeat 3 76 0 23 0 0 0 chr6 77194935 77194958 -112084596 + AT_rich Low_complexity Low_complexity 1 23 0 1543 239 10 30 chr6 77195119 77195512 -112084042 - MLT1B LTR MaLR -5 385 1 23 0 0 0 chr6 77196106 77196129 -112083425 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr6 77196346 77196377 -112083177 + AT_rich Low_complexity Low_complexity 1 31 0 1483 269 8 67 chr6 77196826 77197305 -112082249 + MLT2B1 LTR ERVL 22 472 -48 1734 255 67 13 chr6 77197305 77197904 -112081650 + ERVL LTR ERVL 6 639 -5036 1622 215 66 23 chr6 77197923 77198319 -112081235 + ERVL LTR ERVL 1425 1837 -3927 350 280 32 48 chr6 77198329 77198454 -112081100 + MLT2B2 LTR ERVL 146 268 -247 381 210 7 116 chr6 77198473 77198611 -112080943 + MLT2B1 LTR ERVL 391 513 -7 1412 240 98 47 chr6 77199200 77199928 -112079626 + L1MCa LINE L1 1691 2455 -3971 1411 228 85 67 chr6 77200017 77200779 -112078775 + L1MCa LINE L1 2533 3308 -3118 373 273 20 0 chr6 77200781 77200880 -112078674 + L1MCa LINE L1 4012 4112 -2314 1160 227 16 83 chr6 77201055 77201429 -112078125 + L1MC3 LINE L1 6577 6925 -860 2455 126 3 5 chr6 77201431 77201803 -112077751 - THE1C LTR MaLR -4 371 1 8125 136 100 40 chr6 77201804 77203294 -112076260 - THE1C-int LTR MaLR -1 1579 1 2213 136 13 11 chr6 77203294 77203668 -112075886 - THE1C LTR MaLR 0 375 1 2874 207 80 55 chr6 77203668 77203936 -112075618 + L1MC3 LINE L1 6919 7179 -606 279 0 0 0 chr6 77203936 77203967 -112075587 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1843 135 7 3 chr6 77203969 77204251 -112075303 - AluSx SINE Alu -29 283 1 2874 207 80 55 chr6 77204251 77204797 -112074757 + L1MC3 LINE L1 7179 7756 -29 223 158 18 18 chr6 77204799 77204856 -112074698 + (TA)n Simple_repeat Simple_repeat 1 57 0 186 179 0 60 chr6 77204898 77204982 -112074572 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 581 279 12 6 chr6 77205497 77205658 -112073896 + MIR SINE MIR 79 240 -22 578 269 60 64 chr6 77205752 77206001 -112073553 - MIR SINE MIR -13 249 2 274 330 19 0 chr6 77206115 77206221 -112073333 + MIR SINE MIR 28 135 -127 2052 153 11 8 chr6 77206234 77206588 -112072966 - THE1A LTR MaLR 0 355 1 10344 131 6 9 chr6 77206588 77208173 -112071381 - THE1A-int LTR MaLR 0 1580 1 1879 186 23 6 chr6 77208173 77208522 -112071032 - THE1A LTR MaLR 0 355 1 23 54 0 0 chr6 77208607 77208644 -112070910 + AT_rich Low_complexity Low_complexity 1 37 0 2841 134 0 31 chr6 77208684 77209081 -112070473 + L1PA15 LINE L1 5651 6032 -133 2145 157 11 11 chr6 77209081 77209456 -112070098 + THE1C LTR MaLR 1 375 0 2841 134 0 31 chr6 77209456 77209534 -112070020 + L1PA15 LINE L1 6032 6111 -54 1180 270 7 14 chr6 77210131 77210416 -112069138 + MER70A LTR ERVL 1 283 -189 492 200 20 0 chr6 77213082 77213182 -112066372 - MLT1G1 LTR MaLR -1 594 493 458 327 121 17 chr6 77213198 77213490 -112066064 - MLT1G1 LTR MaLR -231 364 1 555 193 0 0 chr6 77213628 77213747 -112065807 - L1MA9 LINE L1 -1 6311 6193 470 105 12 12 chr6 77213752 77213838 -112065716 + L1MB8 LINE L1 6093 6178 0 231 298 48 24 chr6 77213860 77213944 -112065610 - MIR SINE MIR -11 251 166 244 254 9 9 chr6 77213944 77214058 -112065496 + (TA)n Simple_repeat Simple_repeat 2 115 0 470 217 6 17 chr6 77214084 77214264 -112065290 + (TA)n Simple_repeat Simple_repeat 1 178 0 288 100 0 50 chr6 77214274 77214334 -112065220 + LTR66 LTR ERVL 383 439 -171 408 269 0 0 chr6 77214351 77214444 -112065110 - MIR SINE MIR -125 137 45 1540 146 13 107 chr6 77214823 77215196 -112064358 + MER46B DNA MER2_type 16 231 -5 206 226 38 28 chr6 77215424 77215530 -112064024 + (TTATA)n Simple_repeat Simple_repeat 5 111 0 3030 267 30 22 chr6 77215545 77216349 -112063205 - MLT1C-int LTR MaLR -144 1227 418 505 269 0 7 chr6 77216323 77216464 -112063090 - MLT1C-int LTR MaLR -1103 268 129 * 403 162 9 19 chr6 77216465 77216570 -112062984 - L1MA4 LINE L1 -3 6297 6194 5130 182 37 17 chr6 77216573 77217137 -112062417 - L1MA4 LINE L1 -220 6080 5529 315 0 0 0 chr6 77217137 77217172 -112062382 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 5130 182 37 17 chr6 77217172 77218195 -112061359 - L1MA4 LINE L1 -771 5529 4528 1579 192 3 31 chr6 77218195 77218513 -112061041 - AluJb SINE Alu -3 309 1 207 0 0 0 chr6 77218521 77218544 -112061010 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5130 182 37 17 chr6 77218544 77218799 -112060755 - L1MA4 LINE L1 -1778 4522 4196 1159 322 20 6 chr6 77218802 77219153 -112060401 - MER74C LTR ERVL -100 360 5 564 174 33 0 chr6 77219165 77219286 -112060268 - MLT1C-int LTR MaLR -1246 125 1 799 222 12 18 chr6 77219288 77219459 -112060095 - MLT1C LTR MaLR -2 465 296 215 283 0 17 chr6 77220737 77220797 -112058757 + (TA)n Simple_repeat Simple_repeat 1 59 0 275 216 45 23 chr6 77220797 77220885 -112058669 - L1MC4 LINE L1 -1339 6703 6614 225 146 0 73 chr6 77220839 77220894 -112058660 + L1MCa LINE L1 2006 2056 -4370 * 504 315 50 33 chr6 77220943 77221184 -112058370 + L1M3c LINE L1 1 245 -5896 1651 169 110 20 chr6 77221185 77221541 -112058013 - MSTD LTR MaLR 0 396 9 523 280 68 28 chr6 77221848 77222356 -112057198 + L1MEc LINE L1 2135 2620 -3595 936 241 114 69 chr6 77222428 77222981 -112056573 + L1MEc LINE L1 2719 3296 -2919 1736 171 59 28 chr6 77223068 77223425 -112056129 - LTR10A LTR ERV1 -61 548 181 11717 159 9 17 chr6 77223560 77226730 -112052824 - Harlequin LTR ERV1 -4 6645 1807 307 259 173 0 chr6 77226732 77226813 -112052741 + LTR8 LTR ERV1 159 253 -438 1003 64 7 0 chr6 77226815 77226955 -112052599 - Harlequin LTR ERV1 -5176 1720 1580 * 5400 106 11 42 chr6 77226933 77227913 -112051641 - Harlequin LTR ERV1 -5476 1420 711 759 251 113 104 chr6 77228055 77228736 -112050818 - Harlequin LTR ERV1 -5962 687 1 1782 183 107 63 chr6 77228745 77229270 -112050284 - LTR10A LTR ERV1 -61 548 1 1124 161 0 0 chr6 77229282 77229456 -112050098 + AluSg/x SINE Alu 113 286 -26 606 296 88 33 chr6 77229489 77230002 -112049552 + L1MEc LINE L1 4088 4628 -1587 830 232 54 63 chr6 77230100 77230500 -112049054 + MLT1A1 LTR MaLR 1 353 -12 6119 208 25 94 chr6 77230725 77233600 -112045954 - L1MA3 LINE L1 -5 7719 5063 1997 165 11 19 chr6 77233603 77233967 -112045587 + THE1B LTR MaLR 1 361 -3 2392 130 6 0 chr6 77233971 77234332 -112045222 + THE1B-int LTR MaLR 2 364 -1216 * 6764 126 4 7 chr6 77234329 77235318 -112044236 + THE1B-int LTR MaLR 521 1506 -74 2121 163 11 19 chr6 77235318 77235680 -112043874 + THE1B LTR MaLR 6 364 0 5313 189 32 23 chr6 77235680 77236928 -112042626 - L1MA3 LINE L1 -2501 5064 3778 15780 74 9 1 chr6 77236928 77239834 -112039720 - L1PA6 LINE L1 -4 6150 3212 5313 189 32 23 chr6 77239834 77240747 -112038807 - L1MA3 LINE L1 -3787 3778 2875 23 68 0 0 chr6 77240788 77240832 -112038722 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr6 77241055 77241084 -112038470 + AT_rich Low_complexity Low_complexity 1 29 0 2159 125 0 10 chr6 77241645 77241957 -112037597 + AluSg SINE Alu 1 309 -1 24 0 0 0 chr6 77243573 77243597 -112035957 + AT_rich Low_complexity Low_complexity 1 24 0 186 133 0 0 chr6 77244046 77244076 -112035478 + (TA)n Simple_repeat Simple_repeat 1 30 0 2824 166 66 26 chr6 77244347 77244402 -112035152 + MER6A DNA MER2_type 2 53 -812 183 100 0 0 chr6 77244402 77244432 -112035122 + (CAA)n Simple_repeat Simple_repeat 1 30 0 2824 166 66 26 chr6 77244432 77244777 -112034777 + MER6A DNA MER2_type 53 434 -431 1460 62 57 0 chr6 77244777 77244969 -112034585 + AluYa5 SINE Alu 106 308 -3 2824 166 66 26 chr6 77244969 77245145 -112034409 + MER6A DNA MER2_type 434 602 -3 477 127 0 0 chr6 77245146 77245225 -112034329 + (TG)n Simple_repeat Simple_repeat 1 79 0 225 0 0 0 chr6 77245225 77245250 -112034304 + (TA)n Simple_repeat Simple_repeat 2 26 0 1570 227 55 83 chr6 77245312 77245804 -112033750 - MLT1E2 LTR MaLR -1 625 53 336 281 16 16 chr6 77245804 77245925 -112033629 - MLT2C1 LTR ERVL -233 164 44 1570 227 55 83 chr6 77245925 77245977 -112033577 - MLT1E2 LTR MaLR -573 53 1 219 304 33 43 chr6 77246415 77246507 -112033047 - MIR3 SINE MIR -52 156 66 24 0 0 0 chr6 77247180 77247204 -112032350 + AT_rich Low_complexity Low_complexity 1 24 0 556 250 50 17 chr6 77247287 77247467 -112032087 + MER5A DNA MER1_type 3 188 -1 2106 101 20 0 chr6 77247980 77248277 -112031277 + AluSq SINE Alu 3 305 -8 21 71 0 0 chr6 77248399 77248441 -112031113 + AT_rich Low_complexity Low_complexity 1 42 0 704 186 0 0 chr6 77248576 77248700 -112030854 + FLAM_C SINE Alu 1 124 -19 734 320 36 16 chr6 77249422 77249675 -112029879 - MIR SINE MIR 0 262 5 859 200 50 54 chr6 77253232 77253405 -112026149 + Tigger2 DNA MER2_type 2480 2653 -65 2447 67 0 0 chr6 77253405 77253704 -112025850 - AluY SINE Alu -12 299 1 859 200 50 54 chr6 77253704 77253770 -112025784 + Tigger2 DNA MER2_type 2653 2718 0 24 67 0 0 chr6 77253804 77253849 -112025705 + AT_rich Low_complexity Low_complexity 1 45 0 269 222 32 16 chr6 77254684 77254747 -112024807 - L3 LINE CR1 -272 1305 1242 426 325 157 0 chr6 77254751 77254948 -112024606 - MIR SINE MIR 0 262 35 21 0 0 0 chr6 77255383 77255404 -112024150 + AT_rich Low_complexity Low_complexity 1 21 0 797 230 192 19 chr6 77255545 77255862 -112023692 + MLT1A2 LTR MaLR 1 372 -2 704 262 19 30 chr6 77255925 77256188 -112023366 - L1MB8 LINE L1 -1 6177 5918 27 81 0 0 chr6 77256241 77256303 -112023251 + AT_rich Low_complexity Low_complexity 1 62 0 1351 238 34 11 chr6 77256436 77256793 -112022761 + MLT1A1 LTR MaLR 1 365 0 292 211 53 0 chr6 77259318 77259413 -112020141 + L1ME LINE L1 1789 1888 -4508 541 250 46 62 chr6 77259430 77259689 -112019865 + L1ME LINE L1 1875 2137 -4259 1725 178 7 0 chr6 77259689 77259970 -112019584 + AluJb SINE Alu 1 283 -29 204 40 0 0 chr6 77259973 77259998 -112019556 + (TAA)n Simple_repeat Simple_repeat 2 26 0 541 250 46 62 chr6 77259998 77260170 -112019384 + L1ME LINE L1 2139 2303 -4093 * 1840 249 84 26 chr6 77260155 77261327 -112018227 + L1ME LINE L1 4545 5822 -413 1632 188 0 3 chr6 77262338 77262625 -112016929 - AluJb SINE Alu -26 286 1 1946 132 3 11 chr6 77263490 77263823 -112015731 - AluSq SINE Alu 0 332 2 25 75 0 0 chr6 77263946 77263999 -112015555 + AT_rich Low_complexity Low_complexity 1 53 0 244 354 25 13 chr6 77264753 77264911 -112014643 + L1MD1 LINE L1 5382 5541 -625 322 248 107 47 chr6 77265079 77265228 -112014326 + L1MD1 LINE L1 5771 5928 -314 368 312 112 12 chr6 77265506 77265756 -112013798 + L1ME LINE L1 1343 1617 -4767 388 250 74 51 chr6 77265954 77266130 -112013424 - LTR33A LTR ERVL -72 451 272 552 213 8 8 chr6 77266429 77266551 -112013003 - MER58B DNA MER1_type -8 333 212 278 245 0 11 chr6 77267292 77267386 -112012168 + GA-rich Low_complexity Low_complexity 3 95 0 294 355 77 20 chr6 77267433 77267613 -112011941 + L1ME LINE L1 4720 4888 -1494 2036 98 0 4 chr6 77267613 77267890 -112011664 + AluSg SINE Alu 3 278 -32 288 0 0 0 chr6 77267892 77267924 -112011630 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 294 355 77 20 chr6 77267924 77268340 -112011214 + L1ME LINE L1 4888 5353 -1029 284 283 81 23 chr6 77268784 77268957 -112010597 + L1ME LINE L1 5916 6098 -300 180 111 0 0 chr6 77269054 77269081 -112010473 + (CATA)n Simple_repeat Simple_repeat 2 28 0 22 70 0 0 chr6 77269136 77269179 -112010375 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr6 77269261 77269283 -112010271 + AT_rich Low_complexity Low_complexity 1 22 0 205 372 67 12 chr6 77269384 77269548 -112010006 + L2 LINE L2 2154 2326 -988 448 248 44 0 chr6 77271484 77271597 -112007957 + MLT1G LTR MaLR 457 574 -16 24 53 0 0 chr6 77272412 77272450 -112007104 + AT_rich Low_complexity Low_complexity 1 38 0 2338 118 42 76 chr6 77272450 77272546 -112007008 - MER61C LTR ERV1 0 434 336 2486 43 7 3 chr6 77272546 77272845 -112006709 + AluY SINE Alu 1 300 -11 2338 118 42 76 chr6 77272845 77273197 -112006357 - MER61C LTR ERV1 -98 336 1 20093 126 24 17 chr6 77273197 77276423 -112003131 - MER61C-int LTR ERV1 0 5217 1972 2976 180 42 21 chr6 77276403 77276772 -112002782 - MER52-int LTR ERV1 -3576 3556 3196 * 1755 142 4 4 chr6 77276772 77277046 -112002508 - AluSp SINE Alu -1 312 39 2976 180 42 21 chr6 77277046 77277401 -112002153 - MER52-int LTR ERV1 -3936 3196 1420 2509 146 5 21 chr6 77277406 77277838 -112001716 - MER52-int LTR ERV1 -4376 841 417 303 202 12 36 chr6 77277846 77277930 -112001624 - MER52-int LTR ERV1 -6336 755 674 1232 176 63 39 chr6 77277936 77278191 -112001363 + THE1B LTR MaLR 102 362 -2 10433 130 9 3 chr6 77278193 77279764 -111999790 + THE1B-int LTR MaLR 1 1580 0 1950 153 33 31 chr6 77279768 77280127 -111999427 + THE1B LTR MaLR 5 364 0 1831 178 19 3 chr6 77280127 77280472 -111999082 - MER61C LTR ERV1 -70 431 1 22 35 0 0 chr6 77280477 77280506 -111999048 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr6 77280641 77280684 -111998870 + AT_rich Low_complexity Low_complexity 1 43 0 575 337 63 44 chr6 77280909 77281319 -111998235 - LTR16A LTR ERVL 0 450 33 23 33 0 0 chr6 77281591 77281621 -111997933 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 77282049 77282070 -111997484 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 77282344 77282366 -111997188 + AT_rich Low_complexity Low_complexity 1 22 0 1892 125 0 56 chr6 77282425 77282728 -111996826 + AluY SINE Alu 1 286 -25 203 0 37 0 chr6 77282728 77282755 -111996799 + (TA)n Simple_repeat Simple_repeat 2 29 0 273 275 87 77 chr6 77283526 77284008 -111995546 - L1MC5 LINE L1 -52 7909 7418 1369 219 3 39 chr6 77284008 77284318 -111995236 + AluJo SINE Alu 1 299 -13 273 275 87 77 chr6 77284318 77284435 -111995119 - L1MC5 LINE L1 -543 7418 7304 395 311 7 7 chr6 77284608 77284756 -111994798 - MER52A LTR ERV1 0 1755 1608 981 283 41 66 chr6 77284766 77285460 -111994094 - MER52A LTR ERV1 -281 1474 659 246 352 12 28 chr6 77285543 77285790 -111993764 - L1MC5 LINE L1 -728 7233 6991 521 226 15 30 chr6 77285815 77285948 -111993606 - FLAM_C SINE Alu 0 133 3 3190 117 0 2 chr6 77285948 77286400 -111993154 + MLT2A2 LTR ERVL 1 451 -2 22 0 0 0 chr6 77286408 77286430 -111993124 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr6 77286814 77286849 -111992705 + AT_rich Low_complexity Low_complexity 1 35 0 4951 169 34 32 chr6 77289150 77290219 -111989335 - MER11C LTR ERVK 0 1071 1 26 0 9 0 chr6 77291118 77291187 -111988367 + AT_rich Low_complexity Low_complexity 1 26 0 1726 116 0 4 chr6 77291219 77291460 -111988094 - AluSq SINE Alu -16 297 58 1867 236 78 62 chr6 77291477 77292135 -111987419 - L1ME2 LINE L1 -90 6074 5379 2221 106 0 6 chr6 77292135 77292446 -111987108 - AluY SINE Alu -2 309 1 1867 236 78 62 chr6 77292446 77292632 -111986922 - L1ME2 LINE L1 -785 5379 5197 672 271 39 28 chr6 77292685 77292969 -111986585 - L1ME2 LINE L1 -15 6149 5863 2127 122 0 0 chr6 77293634 77293937 -111985617 - AluSc SINE Alu -6 303 1 24 67 0 0 chr6 77293990 77294035 -111985519 + AT_rich Low_complexity Low_complexity 1 45 0 499 297 77 51 chr6 77294512 77295003 -111984551 + L1M4 LINE L1 2128 2631 -3515 198 239 0 0 chr6 77295047 77295118 -111984436 + T-rich Low_complexity Low_complexity 1 71 0 2187 107 3 0 chr6 77295583 77295883 -111983671 - AluSg SINE Alu -9 301 1 346 282 113 14 chr6 77296007 77296149 -111983405 - MLT1J LTR MaLR -31 480 325 2799 119 141 58 chr6 77296557 77297162 -111982392 - MER4A LTR ERV1 0 664 10 309 51 0 0 chr6 77297194 77297233 -111982321 + (TG)n Simple_repeat Simple_repeat 2 40 0 232 144 66 18 chr6 77297311 77297478 -111982076 + (TA)n Simple_repeat Simple_repeat 2 176 0 30 27 0 0 chr6 77297525 77297562 -111981992 + AT_rich Low_complexity Low_complexity 1 37 0 1000 236 33 111 chr6 77297562 77297985 -111981569 + MLT1B LTR MaLR 1 390 0 319 274 9 35 chr6 77298289 77298402 -111981152 - L1MD3 LINE L1 -8 7987 7878 1935 142 32 41 chr6 77299326 77299664 -111979890 + MER1B DNA MER1_type 3 337 0 719 229 40 35 chr6 77301467 77301668 -111977886 + MER20 DNA MER1_type 18 219 0 235 231 0 0 chr6 77302168 77302241 -111977313 + (TATATG)n Simple_repeat Simple_repeat 1 73 0 31 88 0 0 chr6 77302325 77302405 -111977149 + AT_rich Low_complexity Low_complexity 1 80 0 228 299 183 34 chr6 77302493 77302821 -111976733 - L2 LINE L2 -2415 899 523 22 70 0 0 chr6 77302834 77302877 -111976677 + AT_rich Low_complexity Low_complexity 1 43 0 248 363 21 45 chr6 77303354 77303643 -111975911 - Charlie4 DNA MER1_type -422 1539 1258 239 254 148 16 chr6 77304387 77304509 -111975045 + HAL1 LINE L1 86 223 -2284 459 299 58 7 chr6 77305249 77305403 -111974151 + MLT2E LTR ERVL 3 164 -464 292 323 96 24 chr6 77305460 77305746 -111973808 + MLT2F LTR ERVL 157 658 -5 1283 249 108 38 chr6 77306047 77306250 -111973304 - MLT1D LTR MaLR -2 503 316 2271 176 21 9 chr6 77306250 77306671 -111972883 - MSTB LTR MaLR 0 426 1 1283 249 108 38 chr6 77306671 77306937 -111972617 - MLT1D LTR MaLR -189 316 1 504 293 26 60 chr6 77307131 77307397 -111972157 - L1M4 LINE L1 -5790 752 496 6762 74 5 1 chr6 77307403 77308293 -111971261 - L1PA6 LINE L1 -8 6146 5254 46 19 0 0 chr6 77308800 77308853 -111970701 + AT_rich Low_complexity Low_complexity 1 53 0 2485 40 0 37 chr6 77308941 77309264 -111970290 - AluY SINE Alu 0 311 1 21 36 0 0 chr6 77310516 77310544 -111969010 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr6 77310766 77310799 -111968755 + AT_rich Low_complexity Low_complexity 1 33 0 256 207 126 46 chr6 77311208 77311295 -111968259 - MER58B DNA MER1_type -246 95 2 1060 209 0 20 chr6 77311628 77311829 -111967725 + AluJo SINE Alu 4 200 -112 1338 234 58 21 chr6 77311929 77312305 -111967249 - MER92B LTR ERV1 -246 390 1 297 185 0 0 chr6 77312743 77312808 -111966746 + (TA)n Simple_repeat Simple_repeat 1 65 0 793 320 16 13 chr6 77312818 77313127 -111966427 - MER93a LTR ERV1 -3 399 90 1598 113 13 0 chr6 77313192 77313421 -111966133 + AluSq SINE Alu 66 297 -16 559 276 49 5 chr6 77313870 77314055 -111965499 - MIR SINE MIR -39 223 31 28 0 0 0 chr6 77314266 77314294 -111965260 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr6 77314818 77314844 -111964710 + AT_rich Low_complexity Low_complexity 1 26 0 239 197 76 0 chr6 77315043 77315109 -111964445 - MLT1D LTR MaLR -5 500 430 403 274 0 0 chr6 77315318 77315402 -111964152 + MER81 DNA DNA 1 84 -30 195 382 38 6 chr6 77315519 77315676 -111963878 - MIR SINE MIR -52 210 49 848 256 166 32 chr6 77316039 77316473 -111963081 - MLT1D LTR MaLR 0 505 14 24 53 0 0 chr6 77316669 77316707 -111962847 + AT_rich Low_complexity Low_complexity 1 38 0 180 176 0 0 chr6 77316904 77316938 -111962616 + (TG)n Simple_repeat Simple_repeat 1 34 0 249 57 0 0 chr6 77317920 77317955 -111961599 + (TA)n Simple_repeat Simple_repeat 1 35 0 26 0 0 0 chr6 77320015 77320041 -111959513 + AT_rich Low_complexity Low_complexity 1 26 0 1231 330 144 12 chr6 77320197 77321187 -111958367 - L2 LINE L2 0 3313 2173 1918 107 4 7 chr6 77321547 77321818 -111957736 + AluSq SINE Alu 1 270 -43 777 101 7 65 chr6 77321821 77321999 -111957555 + AluSp/q SINE Alu 176 313 0 28 29 0 0 chr6 77322053 77322088 -111957466 + AT_rich Low_complexity Low_complexity 1 35 0 272 122 0 0 chr6 77322336 77322377 -111957177 + MADE1 DNA Mariner 1 41 -39 207 273 39 39 chr6 77322822 77322899 -111956655 - L2 LINE L2 -4 3309 3233 886 186 0 0 chr6 77323773 77323966 -111955588 + AluY SINE Alu 119 311 0 22 56 0 0 chr6 77324071 77324107 -111955447 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr6 77324309 77324344 -111955210 + AT_rich Low_complexity Low_complexity 1 35 0 233 363 94 19 chr6 77324620 77324780 -111954774 + MIR SINE MIR 20 191 -71 199 315 0 0 chr6 77324967 77325021 -111954533 - L2 LINE L2 -30 3283 3230 390 74 0 0 chr6 77325174 77325228 -111954326 + (TA)n Simple_repeat Simple_repeat 2 55 0 204 200 0 0 chr6 77326485 77326535 -111953019 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 381 22 0 0 chr6 77326581 77326627 -111952927 + (TA)n Simple_repeat Simple_repeat 1 46 0 239 300 0 40 chr6 77326792 77326892 -111952662 + L1MC4 LINE L1 6608 6703 -1339 427 109 406 0 chr6 77327176 77327277 -111952277 - L1PA7 LINE L1 0 6154 6013 21 82 0 0 chr6 77327791 77327840 -111951714 + AT_rich Low_complexity Low_complexity 1 49 0 781 227 9 68 chr6 77328262 77328482 -111951072 - MER63A DNA MER1_type -3 207 1 195 42 0 0 chr6 77329151 77329175 -111950379 + (TC)n Simple_repeat Simple_repeat 1 24 0 730 234 5 5 chr6 77329175 77329363 -111950191 - AluSx SINE Alu -2 308 121 773 192 8 0 chr6 77329464 77329594 -111949960 - AluSx SINE Alu -181 131 1 15101 48 1 4 chr6 77330098 77332000 -111947554 - L1P LINE L1 -3664 2482 587 21 36 0 0 chr6 77333450 77333478 -111946076 + AT_rich Low_complexity Low_complexity 1 28 0 11366 60 12 1 chr6 77333700 77335173 -111944381 - L1P LINE L1 -3382 2764 1275 4341 48 0 2 chr6 77335163 77335730 -111943824 + L1P LINE L1 2746 3311 -2835 * 3297 153 115 30 chr6 77335730 77336636 -111942918 + pTR5 LTR ERV1 743 2025 -413 275 286 10 0 chr6 77336636 77336734 -111942820 + LTR30 LTR ERV1 544 642 -80 1466 114 0 9 chr6 77336738 77336958 -111942596 + pTR5 LTR ERV1 172 389 -2049 10360 39 1 0 chr6 77336958 77338221 -111941333 + L1P LINE L1 3305 4568 -1578 2728 199 68 32 chr6 77338323 77338982 -111940572 - L1MA9 LINE L1 -188 6124 5442 270 106 0 0 chr6 77338994 77339041 -111940513 + (TA)n Simple_repeat Simple_repeat 2 48 0 2138 101 28 0 chr6 77339041 77339328 -111940226 - AluSg SINE Alu -15 295 1 231 133 0 22 chr6 77339328 77339373 -111940181 - L1MA9 LINE L1 -865 5281 5238 306 243 29 15 chr6 77339817 77339953 -111939601 + (TA)n Simple_repeat Simple_repeat 1 138 0 21 71 0 0 chr6 77342349 77342391 -111937163 + AT_rich Low_complexity Low_complexity 1 42 0 2155 69 33 4 chr6 77342723 77342999 -111936555 + AluY SINE Alu 14 297 -14 481 72 58 0 chr6 77343215 77343284 -111936270 + MER57B LTR ERV1 361 433 -1 3033 152 13 0 chr6 77343285 77343759 -111935795 + MER57B-int LTR ERV1 1 480 -7057 3653 133 45 0 chr6 77343786 77344358 -111935196 + MER57B-int LTR ERV1 6551 7148 -389 678 125 0 0 chr6 77344364 77344460 -111935094 + LTR54B LTR ERV1 10 105 -393 1541 86 126 0 chr6 77344460 77344682 -111934872 + MER57B-int LTR ERV1 7288 7537 0 2813 116 7 36 chr6 77344682 77345129 -111934425 + MER57B LTR ERV1 1 434 0 699 65 0 0 chr6 77345266 77345359 -111934195 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 21 0 0 0 chr6 77345684 77345705 -111933849 + AT_rich Low_complexity Low_complexity 1 21 0 3502 182 19 8 chr6 77346501 77347204 -111932350 + MER67C LTR ERV1 1 710 0 1686 145 29 73 chr6 77347496 77347840 -111931714 - MER4E LTR ERV1 -32 747 419 1043 209 21 38 chr6 77347848 77348083 -111931471 - AluJb SINE Alu -27 285 55 351 0 0 0 chr6 77348313 77348352 -111931202 + (TG)n Simple_repeat Simple_repeat 2 40 0 584 72 12 0 chr6 77348464 77348547 -111931007 - L1PA13 LINE L1 -16 6147 6064 2155 101 0 3 chr6 77350116 77350424 -111929130 + AluSc SINE Alu 1 307 -2 300 90 30 45 chr6 77350424 77350491 -111929063 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 23 33 0 0 chr6 77350745 77350775 -111928779 + AT_rich Low_complexity Low_complexity 1 30 0 510 257 27 16 chr6 77351547 77351576 -111927978 - Tigger7 DNA MER2_type -201 349 322 1615 55 0 0 chr6 77351576 77351775 -111927779 + L1PA7 LINE L1 5944 6142 -12 510 257 27 16 chr6 77351775 77351970 -111927584 - Tigger7 DNA MER2_type -228 322 71 * 1721 167 39 3 chr6 77351964 77352294 -111927260 + Tigger7 DNA MER2_type 2143 2484 -3 325 176 120 78 chr6 77352579 77352721 -111926833 + L1ME2 LINE L1 4456 4603 -1543 700 235 156 42 chr6 77352884 77353339 -111926215 + L1ME2 LINE L1 4692 5198 -948 1849 263 36 23 chr6 77353394 77354086 -111925468 + L1ME2 LINE L1 5463 6163 -1 206 320 21 10 chr6 77354953 77355050 -111924504 + L2 LINE L2 1904 2001 -1313 198 355 105 0 chr6 77355226 77355302 -111924252 + L2 LINE L2 3138 3221 -51 1481 230 28 45 chr6 77355614 77356047 -111923507 + MLT2D LTR ERVL 6 423 -41 306 0 0 0 chr6 77356047 77356081 -111923473 + (CA)n Simple_repeat Simple_repeat 2 35 0 1481 230 28 45 chr6 77356081 77356123 -111923431 + MLT2D LTR ERVL 423 464 0 28 61 0 0 chr6 77356611 77356660 -111922894 + AT_rich Low_complexity Low_complexity 1 49 0 363 296 38 50 chr6 77357380 77357539 -111922015 + L1M4 LINE L1 281 437 -6105 513 58 14 0 chr6 77357552 77357621 -111921933 + MER84 LTR ERVI 1 70 -437 25 0 0 0 chr6 77357864 77357889 -111921665 + AT_rich Low_complexity Low_complexity 1 25 0 355 230 66 94 chr6 77357919 77358132 -111921422 - L1 LINE L1 -2852 3294 3088 1164 262 77 25 chr6 77358402 77358845 -111920709 + HsTC2 DNA Tc2 1 466 -1432 27 0 0 0 chr6 77358968 77358995 -111920559 + AT_rich Low_complexity Low_complexity 1 27 0 443 265 95 44 chr6 77359380 77359697 -111919857 - HAL1b LINE L1 -806 542 210 28 29 0 0 chr6 77359792 77359827 -111919727 + AT_rich Low_complexity Low_complexity 1 35 0 1388 199 14 17 chr6 77361473 77361770 -111917784 + MLT1A1 LTR MaLR 10 305 -60 234 0 0 0 chr6 77361804 77361830 -111917724 + (TG)n Simple_repeat Simple_repeat 1 26 0 27 29 0 0 chr6 77361883 77361917 -111917637 + AT_rich Low_complexity Low_complexity 1 34 0 665 238 72 45 chr6 77363436 77363659 -111915895 + MLT1-int LTR MaLR 520 748 -623 368 263 8 11 chr6 77363807 77363934 -111915620 + MLT1-int LTR MaLR 961 1031 -340 * 1044 171 45 0 chr6 77363924 77364100 -111915454 + MLT1-int LTR MaLR 1546 1729 -6 1636 167 0 21 chr6 77364904 77364917 -111914637 - AluSx SINE Alu -15 297 285 540 0 0 0 chr6 77364917 77364977 -111914577 + (TTTAG)n Simple_repeat Simple_repeat 1 60 0 1636 167 0 21 chr6 77364977 77365244 -111914310 - AluSx SINE Alu -27 285 23 1289 339 92 52 chr6 77365625 77366542 -111913012 + MER45C DNA AcHobo 1 953 0 203 291 40 54 chr6 77367032 77367180 -111912374 + MIR SINE MIR 17 162 -100 1113 167 6 0 chr6 77367260 77367440 -111912114 - AluSx SINE Alu -131 181 1 33 43 0 0 chr6 77367797 77367844 -111911710 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr6 77368624 77368647 -111910907 + AT_rich Low_complexity Low_complexity 1 23 0 284 270 22 11 chr6 77368940 77369029 -111910525 + MER58 DNA MER1_type 191 280 -2140 467 247 115 24 chr6 77369211 77369462 -111910092 - L1ME1 LINE L1 0 6178 5889 9537 201 54 12 chr6 77369762 77372251 -111907303 - L1MA5 LINE L1 0 6300 3642 198 0 0 0 chr6 77372251 77372273 -111907281 + (TTG)n Simple_repeat Simple_repeat 3 24 0 9537 201 54 12 chr6 77372273 77373073 -111906481 - L1MA5 LINE L1 -2658 3642 2877 1965 90 0 0 chr6 77373216 77373471 -111906083 - AluSc SINE Alu -54 255 1 869 268 43 77 chr6 77373641 77374059 -111905495 + L1M4 LINE L1 31 434 -6108 216 0 0 0 chr6 77374079 77374103 -111905451 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 469 245 10 0 chr6 77374103 77374205 -111905349 - L1PB4 LINE L1 -7 6149 6047 * 875 116 0 7 chr6 77374203 77374355 -111905199 + L1P5 LINE L1 5565 5700 -456 1532 293 28 5 chr6 77374373 77374799 -111904755 + L1M4 LINE L1 482 917 -5625 1722 148 43 10 chr6 77374804 77375108 -111904446 - MSTA LTR MaLR -1 427 114 2090 95 23 87 chr6 77375108 77375318 -111904236 - THE1B LTR MaLR 0 364 189 1659 161 19 19 chr6 77375318 77375628 -111903926 - AluSx SINE Alu -2 310 1 2090 95 23 87 chr6 77375628 77375806 -111903748 - THE1B LTR MaLR -175 189 1 3665 118 23 0 chr6 77375806 77376329 -111903225 - THE1B-int LTR MaLR 0 1580 1046 326 98 82 33 chr6 77376329 77376390 -111903164 - MSTA LTR MaLR -300 64 1 * 716 153 8 0 chr6 77376390 77376507 -111903047 - MSTA LTR MaLR -310 118 1 1761 270 76 82 chr6 77376544 77376804 -111902750 + L1M4 LINE L1 957 1217 -5429 321 183 17 0 chr6 77376804 77376864 -111902690 + U7 snRNA snRNA 2 62 -1 1761 270 76 82 chr6 77376864 77377422 -111902132 + L1M4 LINE L1 1217 1777 -4869 742 171 14 0 chr6 77377422 77377562 -111901992 - L1PA16 LINE L1 -4 6162 6021 1761 270 76 82 chr6 77377562 77378500 -111901054 + L1M4 LINE L1 1777 2704 -3942 225 0 0 0 chr6 77378500 77378525 -111901029 + (CA)n Simple_repeat Simple_repeat 2 26 0 1761 270 76 82 chr6 77378525 77378575 -111900979 + L1M4 LINE L1 2704 2753 -3893 428 342 48 29 chr6 77378575 77378952 -111900602 - ERVL LTR ERVL -455 5199 4816 438 187 0 0 chr6 77379016 77379091 -111900463 - AluSg/x SINE Alu -35 277 203 309 63 16 48 chr6 77379491 77379554 -111900000 + (CAAAA)n Simple_repeat Simple_repeat 5 65 0 610 356 24 0 chr6 77379575 77379780 -111899774 - ERVL LTR ERVL -1398 4366 4157 234 94 19 38 chr6 77380379 77380432 -111899122 + (TG)n Simple_repeat Simple_repeat 1 52 0 29 28 0 0 chr6 77380603 77380639 -111898915 + AT_rich Low_complexity Low_complexity 1 36 0 30 69 0 0 chr6 77381766 77381824 -111897730 + AT_rich Low_complexity Low_complexity 1 58 0 32 43 0 0 chr6 77382013 77382059 -111897495 + AT_rich Low_complexity Low_complexity 1 46 0 631 355 63 31 chr6 77382291 77382674 -111896880 + L2 LINE L2 2845 3239 -74 258 200 0 0 chr6 77382708 77382749 -111896805 + (TA)n Simple_repeat Simple_repeat 2 45 -16 180 0 0 0 chr6 77382749 77382769 -111896785 + (TC)n Simple_repeat Simple_repeat 2 21 0 258 200 0 0 chr6 77382769 77382787 -111896767 + (TA)n Simple_repeat Simple_repeat 44 61 0 203 100 0 25 chr6 77382907 77382947 -111896607 + (TA)n Simple_repeat Simple_repeat 1 39 0 2357 76 7 0 chr6 77383050 77383351 -111896203 - AluY SINE Alu -8 303 1 37 76 0 0 chr6 77383654 77383733 -111895821 + AT_rich Low_complexity Low_complexity 1 79 0 2173 101 0 3 chr6 77385259 77385555 -111893999 - AluY SINE Alu -16 295 1 22 0 0 0 chr6 77386055 77386077 -111893477 + AT_rich Low_complexity Low_complexity 1 22 0 495 354 57 14 chr6 77387362 77387712 -111891842 - ERVL LTR ERVL -810 4954 4590 373 264 55 55 chr6 77387731 77387894 -111891660 + HERVL LTR ERVL 4207 4369 -1285 1623 246 55 45 chr6 77388173 77389685 -111889869 - L1MB7 LINE L1 -5 6677 5066 462 228 27 47 chr6 77389785 77389934 -111889620 - L1MB7 LINE L1 -1544 5100 4955 3281 107 45 2 chr6 77390055 77390568 -111888986 - L1PA13 LINE L1 -5 6158 5624 4968 180 20 19 chr6 77390590 77391619 -111887935 - L1MA4 LINE L1 -16 6284 5254 228 211 64 58 chr6 77391626 77391797 -111887757 - L1MB7 LINE L1 -1669 4975 4804 546 268 13 44 chr6 77391799 77392027 -111887527 - L1MB7 LINE L1 -1962 4682 4462 * 640 260 23 83 chr6 77392002 77392433 -111887121 - L1MB7 LINE L1 -5216 1326 922 2284 75 0 3 chr6 77392574 77392895 -111886659 - L1P LINE L1 -964 5182 4863 5830 81 5 1 chr6 77392895 77393701 -111885853 + L1P LINE L1 2935 3743 -2403 1573 173 4 4 chr6 77394656 77394933 -111884621 + AluJo SINE Alu 1 277 -35 8110 86 5 0 chr6 77395422 77396539 -111883015 + L1P LINE L1 3742 4864 -1282 2878 133 56 10 chr6 77396599 77397082 -111882472 - MER84 LTR ERV1 -2 505 1 8802 146 22 3 chr6 77397082 77398489 -111881065 - MER84-int LTR ERV1 0 4954 3521 676 130 186 37 chr6 77398489 77398650 -111880904 + MSTA LTR MaLR 1 185 -243 4901 128 21 5 chr6 77398650 77399397 -111880157 - MER84-int LTR ERV1 -2662 2292 1534 599 179 64 58 chr6 77399379 77399552 -111880002 + pTR5 LTR ERV1 726 899 -1539 * 4979 128 1 27 chr6 77399543 77400355 -111879199 + pTR5 LTR ERV1 1648 2438 0 10230 137 13 1 chr6 77400356 77401878 -111877676 - MER84-int LTR ERV1 -3413 1541 1 2005 156 42 6 chr6 77401878 77402238 -111877316 - MER84 LTR ERVI 0 507 135 22 0 0 0 chr6 77402660 77402682 -111876872 + AT_rich Low_complexity Low_complexity 1 22 0 1723 174 7 3 chr6 77402777 77403081 -111876473 + AluSx SINE Alu 1 305 -7 25 0 0 0 chr6 77403088 77403113 -111876441 + AT_rich Low_complexity Low_complexity 1 25 0 259 183 99 0 chr6 77403352 77403423 -111876131 - MER84 LTR ERV1 -28 398 321 1156 193 38 67 chr6 77403463 77403902 -111875652 - MLT2A2 LTR ERVL 0 554 114 11640 114 15 0 chr6 77403902 77405563 -111873991 - HERVL LTR ERVL -916 4738 3053 1919 171 39 33 chr6 77405573 77406117 -111873437 - MLT2A2 LTR ERVL -2 552 3 526 201 65 41 chr6 77406126 77406295 -111873259 - LTR37A LTR ERV1 -228 198 26 26 82 0 0 chr6 77406313 77406374 -111873180 + AT_rich Low_complexity Low_complexity 1 61 0 204 404 11 0 chr6 77407161 77407255 -111872299 - L3 LINE CR1 -154 1423 1329 223 225 28 0 chr6 77407422 77407493 -111872061 + (TA)n Simple_repeat Simple_repeat 2 74 0 2759 37 0 28 chr6 77407866 77408221 -111871333 - L1PA3 LINE L1 -1159 4987 4643 7474 36 0 0 chr6 77408221 77409383 -111870171 + L1PA3 LINE L1 4992 6152 -3 562 194 16 24 chr6 77410055 77410179 -111869375 - FRAM SINE Alu -18 158 36 300 266 108 16 chr6 77410186 77410414 -111869140 - L1ME2 LINE L1 -289 5881 5640 556 331 74 26 chr6 77410533 77410844 -111868710 - MLT1I LTR MaLR -3 406 81 24 75 0 0 chr6 77411522 77411562 -111867992 + AT_rich Low_complexity Low_complexity 1 40 0 43 71 0 0 chr6 77411826 77411911 -111867643 + AT_rich Low_complexity Low_complexity 1 85 0 1311 245 54 44 chr6 77412285 77412783 -111866771 - MLT1D LTR MaLR 0 505 3 24 100 0 0 chr6 77412887 77412967 -111866587 + AT_rich Low_complexity Low_complexity 1 80 0 5120 212 3 11 chr6 77413254 77414409 -111865145 + L1P LINE L1 2360 3505 -2641 445 332 103 45 chr6 77414764 77415327 -111864227 - L1M4 LINE L1 -2887 4321 3792 249 33 0 0 chr6 77415327 77415357 -111864197 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 1969 118 38 0 chr6 77415357 77415644 -111863910 - AluSx SINE Alu -14 298 1 445 332 103 45 chr6 77415644 77415721 -111863833 - L1M4 LINE L1 -3415 3793 3643 4858 263 101 40 chr6 77416400 77416705 -111862849 - L1 LINE L1 -3386 3720 3435 1818 195 19 0 chr6 77416705 77417064 -111862490 - MER47A DNA MER2_type 0 366 1 4858 263 101 40 chr6 77417064 77420497 -111859057 - L1 LINE L1 -3671 3435 42 490 307 100 17 chr6 77420627 77420858 -111858696 - MIR SINE MIR -1 261 12 292 366 133 17 chr6 77422350 77422697 -111856857 - L3 LINE CR1 -11 1566 1180 387 192 26 0 chr6 77423151 77423229 -111856325 + MER101B LTR ERV1 2 81 -489 7250 48 16 4 chr6 77424267 77425917 -111853637 - L1PA5 LINE L1 -11 6143 4482 2513 238 92 11 chr6 77426032 77426695 -111852859 - L1M4 LINE L1 -6416 691 -25 183 309 62 12 chr6 77427523 77427604 -111851950 + MIR SINE MIR 122 206 -56 201 74 0 0 chr6 77428211 77428238 -111851316 + (TAA)n Simple_repeat Simple_repeat 1 27 0 314 350 71 20 chr6 77429818 77430015 -111849539 - MIR SINE MIR -54 208 2 247 302 78 17 chr6 77430237 77430353 -111849201 + MIR SINE MIR 120 242 -20 243 267 0 0 chr6 77430838 77430924 -111848630 + GA-rich Low_complexity Low_complexity 4 89 0 24 0 0 0 chr6 77430990 77431014 -111848540 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 77431100 77431121 -111848433 + AT_rich Low_complexity Low_complexity 1 21 0 1312 193 34 99 chr6 77431179 77431277 -111848277 - MLT1A2 LTR MaLR -15 359 256 1857 166 10 0 chr6 77431277 77431585 -111847969 + AluSx SINE Alu 1 311 -1 1312 193 34 99 chr6 77431585 77431870 -111847684 - MLT1A2 LTR MaLR -118 256 1 1843 135 21 3 chr6 77533130 77533419 -111746135 - AluSc SINE Alu -13 296 3 566 304 84 35 chr6 77534311 77534715 -111744839 - MER90 LTR ERV1 -77 537 114 1151 303 19 28 chr6 77534843 77535265 -111744289 + L1M3b LINE L1 9 426 -5855 1941 227 2 7 chr6 77535396 77535846 -111743708 - L1M4 LINE L1 -2041 4105 3658 * 3223 206 15 9 chr6 77535826 77536567 -111742987 - L1 LINE L1 -1744 4402 3658 2672 221 41 31 chr6 77536680 77537280 -111742274 - L1 LINE L1 -1938 4208 3616 320 0 25 0 chr6 77537280 77537320 -111742234 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 2672 221 41 31 chr6 77537320 77537339 -111742215 - L1 LINE L1 -2530 3616 3599 1767 73 59 44 chr6 77537339 77537612 -111741942 - AluSc SINE Alu -32 277 1 2672 221 41 31 chr6 77537612 77537678 -111741876 - L1 LINE L1 -2547 3599 3515 1800 122 25 18 chr6 77537797 77538083 -111741471 - AluY SINE Alu -17 294 7 812 236 79 0 chr6 77538086 77538289 -111741265 - L1MB5 LINE L1 -131 6043 5825 559 280 76 29 chr6 77538343 77538764 -111740790 - L1MEc LINE L1 -4574 2251 1811 2983 75 10 0 chr6 77538802 77539201 -111740353 - L1PA7 LINE L1 -3 6151 5749 1149 98 25 0 chr6 77539201 77539364 -111740190 + L1P2 LINE L1 5442 5608 -546 33 43 0 0 chr6 77540229 77540276 -111739278 + AT_rich Low_complexity Low_complexity 1 47 0 703 240 98 27 chr6 77541482 77541891 -111737663 + MER114 LTR ERV 26 463 -185 33 0 0 0 chr6 77541996 77542029 -111737525 + AT_rich Low_complexity Low_complexity 1 33 0 470 299 88 5 chr6 77542237 77542431 -111737123 - LTR50 LTR ERVL -585 210 1 339 256 34 17 chr6 77542474 77542591 -111736963 + L1ME3A LINE L1 1527 1645 -4751 323 346 39 47 chr6 77542845 77543099 -111736455 + L1ME LINE L1 5484 5735 -429 378 322 0 17 chr6 77543380 77543498 -111736056 - MLT1J LTR MaLR -268 243 128 390 159 29 0 chr6 77544678 77544747 -111734807 + MSTB LTR MaLR 1 71 -355 10456 188 23 11 chr6 77544817 77548042 -111731512 + L1MA3 LINE L1 3036 6305 0 2067 180 21 13 chr6 77548046 77548429 -111731125 + MSTB LTR MaLR 41 426 0 25 0 0 0 chr6 77548457 77548482 -111731072 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr6 77548598 77548641 -111730913 + AT_rich Low_complexity Low_complexity 1 43 0 242 279 157 23 chr6 77548880 77549052 -111730502 - L1MEc LINE L1 -6342 200 6 29 60 0 0 chr6 77549177 77549227 -111730327 + AT_rich Low_complexity Low_complexity 1 50 0 203 386 0 14 chr6 77549314 77549384 -111730170 - L2 LINE L2 -250 3022 2954 186 191 0 0 chr6 77549804 77549851 -111729703 + (CA)n Simple_repeat Simple_repeat 2 48 0 224 265 0 0 chr6 77550693 77550742 -111728812 + (TA)n Simple_repeat Simple_repeat 2 50 0 277 185 0 37 chr6 77550792 77550846 -111728708 - L1ME LINE L1 -503 5667 5616 348 320 45 15 chr6 77550975 77551175 -111728379 + L1ME3A LINE L1 3164 3369 -2846 311 311 103 30 chr6 77551391 77551546 -111728008 + L1ME3A LINE L1 4188 4330 -1885 27 62 0 0 chr6 77551546 77551594 -111727960 + AT_rich Low_complexity Low_complexity 1 48 0 311 311 103 30 chr6 77551594 77551608 -111727946 + L1ME3A LINE L1 4330 4342 -1873 24 0 0 0 chr6 77551608 77551632 -111727922 + AT_rich Low_complexity Low_complexity 1 24 0 311 311 103 30 chr6 77551632 77551836 -111727718 + L1ME3A LINE L1 4342 4667 -1548 273 173 12 25 chr6 77552136 77552217 -111727337 + GA-rich Low_complexity Low_complexity 1 80 0 304 315 148 10 chr6 77552579 77552884 -111726670 + L1ME3A LINE L1 5382 5728 -507 29 47 0 0 chr6 77552975 77553018 -111726536 + AT_rich Low_complexity Low_complexity 1 43 0 380 267 79 25 chr6 77553034 77553236 -111726318 + L1ME3A LINE L1 5814 6026 -213 26 30 0 0 chr6 77553854 77553887 -111725667 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr6 77554089 77554125 -111725429 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 77554152 77554174 -111725380 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 77554302 77554331 -111725223 + AT_rich Low_complexity Low_complexity 1 29 0 238 191 0 0 chr6 77554599 77554646 -111724908 + (CATA)n Simple_repeat Simple_repeat 2 48 0 24 77 0 0 chr6 77554655 77554707 -111724847 + AT_rich Low_complexity Low_complexity 1 52 0 262 254 30 0 chr6 77555560 77555627 -111723927 - LTR66 LTR ERVL -153 457 389 202 379 124 17 chr6 77556743 77556920 -111722634 + L2 LINE L2 2858 3053 -260 189 107 0 0 chr6 77556921 77556949 -111722605 + (TATG)n Simple_repeat Simple_repeat 3 30 0 454 264 64 0 chr6 77557016 77557141 -111722413 + L2 LINE L2 3180 3312 -1 209 324 147 15 chr6 77557377 77557513 -111722041 + MIR SINE MIR 59 212 -50 585 293 35 6 chr6 77558212 77558386 -111721168 + MIR SINE MIR 84 262 0 246 214 12 60 chr6 77559080 77559164 -111720390 + (CATATA)n Simple_repeat Simple_repeat 3 82 0 391 250 76 15 chr6 77559408 77559540 -111720014 + L1ME3A LINE L1 6017 6156 -83 266 361 10 0 chr6 77559629 77559726 -111719828 - L2 LINE L2 -1 3271 3174 21 82 0 0 chr6 77559788 77559837 -111719717 + AT_rich Low_complexity Low_complexity 1 49 0 23 33 0 0 chr6 77559961 77559991 -111719563 + AT_rich Low_complexity Low_complexity 1 30 0 401 240 201 34 chr6 77559991 77560195 -111719359 - L1ME2 LINE L1 -9 6155 5918 1007 163 38 57 chr6 77560412 77560485 -111719069 - AluSx SINE Alu -107 205 132 2414 65 3 7 chr6 77560485 77560795 -111718759 - AluY SINE Alu 0 311 3 1007 163 38 57 chr6 77560795 77560930 -111718624 - AluSx SINE Alu -180 132 1 5629 225 35 42 chr6 77560931 77561175 -111718379 - L1 LINE L1 -2441 3887 3643 2153 102 75 12 chr6 77561175 77561509 -111718045 + THE1A LTR MaLR 1 355 0 5629 225 35 42 chr6 77561509 77563929 -111715625 - L1 LINE L1 -2685 3643 1206 2235 123 0 0 chr6 77563929 77564239 -111715315 - AluSg SINE Alu 0 310 1 5629 225 35 42 chr6 77564239 77564977 -111714577 - L1 LINE L1 -5122 1206 542 2303 91 0 25 chr6 77564977 77565295 -111714259 - AluSq SINE Alu -3 310 1 5629 225 35 42 chr6 77565295 77565820 -111713734 - L1 LINE L1 -5786 542 14 338 146 0 58 chr6 77565977 77566080 -111713474 + (TTTA)n Simple_repeat Simple_repeat 1 97 0 295 152 46 7 chr6 77566080 77566231 -111713323 + (TA)n Simple_repeat Simple_repeat 1 157 0 333 0 0 0 chr6 77566271 77566308 -111713246 + (TG)n Simple_repeat Simple_repeat 2 38 0 1956 151 43 23 chr6 77566310 77566661 -111712893 + THE1B LTR MaLR 7 364 0 10212 121 26 6 chr6 77566661 77568209 -111711345 + THE1B-int LTR MaLR 1 1580 0 1716 169 45 53 chr6 77568209 77568564 -111710990 + THE1B LTR MaLR 1 352 -12 366 23 0 0 chr6 77568580 77568623 -111710931 + (TG)n Simple_repeat Simple_repeat 2 44 0 615 276 87 25 chr6 77568635 77569193 -111710361 - L1M4c LINE L1 -2818 3564 2947 679 277 52 70 chr6 77569209 77570471 -111709083 - L1M4c LINE L1 -3536 2846 1491 2044 129 7 3 chr6 77570476 77570778 -111708776 - AluSq SINE Alu -10 303 1 950 209 24 5 chr6 77570799 77571009 -111708545 - L1MA6 LINE L1 -22 6278 6065 465 254 55 15 chr6 77571314 77571529 -111708025 - L1ME2 LINE L1 -299 5871 5649 28 29 0 0 chr6 77571529 77571564 -111707990 + AT_rich Low_complexity Low_complexity 1 35 0 298 306 28 42 chr6 77571600 77571744 -111707810 + L2 LINE L2 3133 3274 -39 759 271 57 4 chr6 77571748 77572029 -111707525 - L1ME2 LINE L1 -551 5613 5318 4637 200 18 21 chr6 77572053 77573697 -111705857 - L1PA15 LINE L1 -2 6814 5182 3751 251 41 32 chr6 77573699 77575024 -111704530 - L1PA15 LINE L1 -3616 3181 1836 1893 149 0 7 chr6 77575024 77575320 -111704234 - AluSx SINE Alu -18 294 1 3751 251 41 32 chr6 77575320 77575978 -111703576 - L1PA15 LINE L1 -4961 1836 1185 518 258 0 17 chr6 77575981 77576101 -111703453 - L1PA15 LINE L1 -6669 118 1 21 0 0 0 chr6 77576291 77576312 -111703242 + AT_rich Low_complexity Low_complexity 1 21 0 1767 221 24 28 chr6 77576384 77576809 -111702745 - MSTB LTR MaLR 0 426 4 4597 202 54 3 chr6 77576967 77577950 -111701604 - L1MC1 LINE L1 -18 6315 5283 261 227 0 76 chr6 77578273 77578339 -111701215 - L2 LINE L2 -7 3306 3246 195 404 0 32 chr6 77578467 77578561 -111700993 - L2 LINE L2 -212 3060 2970 242 319 80 26 chr6 77578805 77578918 -111700636 + L2 LINE L2 3193 3311 -2 43040 47 3 1 chr6 77582185 77588320 -111691234 + L1PA4 LINE L1 3 6153 -2 372 324 14 22 chr6 77588889 77589028 -111690526 + MIR SINE MIR 111 248 -14 198 336 71 10 chr6 77589634 77589735 -111689819 + MIR SINE MIR 72 177 -67 2556 259 26 29 chr6 77589871 77591456 -111688098 + L1MC1 LINE L1 4287 5866 -467 2130 100 7 13 chr6 77591531 77591840 -111687714 + AluSg SINE Alu 1 307 -3 21 36 0 0 chr6 77591980 77592008 -111687546 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 77592852 77592873 -111686681 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr6 77593984 77594015 -111685539 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr6 77594147 77594192 -111685362 + AT_rich Low_complexity Low_complexity 1 45 0 229 204 0 0 chr6 77594569 77594623 -111684931 + L1MC4 LINE L1 6649 6702 -1340 276 335 41 77 chr6 77594824 77595045 -111684509 - MIR SINE MIR -2 260 48 650 332 20 28 chr6 77596724 77596974 -111682580 - MIR SINE MIR -13 249 2 244 212 33 50 chr6 77597004 77597077 -111682477 - MIR SINE MIR -63 145 91 192 361 89 56 chr6 77597127 77597429 -111682125 - L2 LINE L2 -798 2516 2205 2399 223 20 7 chr6 77597947 77598486 -111681068 - LTR35 LTR ERV1 0 618 73 463 291 50 89 chr6 77599005 77599240 -111680314 + L2 LINE L2 2537 2759 -555 990 260 5 0 chr6 77599240 77599459 -111680095 - MER58A DNA MER1_type -3 221 2 463 291 50 89 chr6 77599459 77599525 -111680029 + L2 LINE L2 2759 2826 -488 744 266 113 4 chr6 77599718 77599947 -111679607 + MIR SINE MIR 3 256 -6 187 395 104 0 chr6 77599940 77600074 -111679480 + L2 LINE L2 3166 3313 0 * 36 0 0 0 chr6 77600549 77600585 -111678969 + AT_rich Low_complexity Low_complexity 1 36 0 319 343 75 8 chr6 77600687 77600821 -111678733 + L2 LINE L2 3170 3312 -1 271 133 17 17 chr6 77601193 77601253 -111678301 + CT-rich Low_complexity Low_complexity 1 60 0 1616 181 7 3 chr6 77601253 77601546 -111678008 - AluSx SINE Alu -5 307 14 1005 293 113 38 chr6 77602015 77603020 -111676534 - L1MC4 LINE L1 -13 8029 6780 221 83 28 0 chr6 77603020 77603056 -111676498 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1005 293 113 38 chr6 77603056 77603501 -111676053 - L1MC4 LINE L1 -1262 6780 6370 283 270 11 11 chr6 77603588 77603677 -111675877 + CT-rich Low_complexity Low_complexity 2 90 0 1088 197 0 0 chr6 77603756 77603949 -111675605 + AluJo SINE Alu 96 288 -24 1275 253 151 53 chr6 77604059 77604279 -111675275 - L1MC4a LINE L1 -1641 6167 5970 243 61 0 0 chr6 77604279 77604312 -111675242 + (CA)n Simple_repeat Simple_repeat 2 34 0 1275 253 151 53 chr6 77604312 77604907 -111674647 - L1MC4a LINE L1 -1838 5970 5272 1217 215 32 0 chr6 77604900 77605179 -111674375 - L1MA4 LINE L1 -964 5182 4895 * 1126 178 39 19 chr6 77605168 77605291 -111674263 + L1MA4 LINE L1 5176 5295 -1005 * 247 24 0 48 chr6 77605291 77605333 -111674221 + (CAAAA)n Simple_repeat Simple_repeat 4 43 0 1126 178 39 19 chr6 77605333 77606151 -111673403 + L1MA4 LINE L1 5295 6300 0 34 0 0 0 chr6 77606305 77606339 -111673215 + AT_rich Low_complexity Low_complexity 1 34 0 14072 35 0 1 chr6 77606339 77608807 -111670747 - L1PA4 LINE L1 -3 6152 3686 236 252 118 67 chr6 77608929 77609048 -111670506 - L1MC4a LINE L1 -1145 5001 4877 228 116 0 0 chr6 77609080 77609123 -111670431 + LTR66 LTR ERVL 399 441 -169 236 226 21 54 chr6 77609145 77609238 -111670316 - L1MC4 LINE L1 -1339 6703 6614 * 241 272 11 11 chr6 77609161 77609253 -111670301 + L1MC4 LINE L1 6614 6705 -1337 1048 151 97 0 chr6 77612648 77612833 -111666721 + AluJb SINE Alu 91 293 -19 28 0 0 0 chr6 77613249 77613277 -111666277 + AT_rich Low_complexity Low_complexity 1 28 0 293 219 0 37 chr6 77614531 77614613 -111664941 - MIR SINE MIR 0 262 184 21 36 0 0 chr6 77615130 77615158 -111664396 + AT_rich Low_complexity Low_complexity 1 28 0 1853 135 20 7 chr6 77615329 77615626 -111663928 - AluSx SINE Alu -11 301 1 377 343 5 52 chr6 77616139 77616349 -111663205 + L2 LINE L2 1377 1576 -1738 953 205 24 11 chr6 77616587 77616840 -111662714 + L1MA4 LINE L1 6043 6301 -4 26 0 0 0 chr6 77617324 77617350 -111662204 + AT_rich Low_complexity Low_complexity 1 26 0 1961 133 0 3 chr6 77618256 77618541 -111661013 + AluSx SINE Alu 1 284 -28 196 299 52 13 chr6 77619388 77619465 -111660089 + MIR SINE MIR 144 223 -39 184 400 25 12 chr6 77619623 77619703 -111659851 + L2 LINE L2 2588 2668 -646 367 322 61 37 chr6 77622606 77622820 -111656734 + MIR SINE MIR 3 221 -41 6020 38 3 4 chr6 77623282 77624019 -111655535 - L1PA4 LINE L1 0 6155 5420 3619 96 23 2 chr6 77624024 77624547 -111655007 - L1PA7 LINE L1 0 6154 5621 356 264 0 11 chr6 77624553 77624644 -111654910 - L1MC4 LINE L1 -1339 6703 6614 219 173 0 0 chr6 77624652 77624704 -111654850 + (TA)n Simple_repeat Simple_repeat 2 53 0 325 245 0 64 chr6 77624712 77624806 -111654748 - L1MC4 LINE L1 -1339 6703 6616 314 214 0 82 chr6 77624828 77624926 -111654628 - L1MC4 LINE L1 -1339 6703 6614 222 174 0 0 chr6 77624934 77624980 -111654574 + (TA)n Simple_repeat Simple_repeat 2 47 0 2372 75 0 3 chr6 77626225 77626533 -111653021 - AluY SINE Alu -4 307 1 342 283 70 62 chr6 77627587 77627845 -111651709 + MLT1K LTR MaLR 321 580 -8 347 60 20 0 chr6 77628112 77628162 -111651392 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 330 259 100 53 chr6 77628168 77628338 -111651216 + MIR SINE MIR 71 248 -14 30 0 0 0 chr6 77628654 77628684 -111650870 + AT_rich Low_complexity Low_complexity 1 30 0 1937 185 51 40 chr6 77628752 77629180 -111650374 - MLT2C2 LTR ERVL -27 437 5 748 220 144 44 chr6 77629545 77629795 -111649759 + MLT1A1 LTR MaLR 78 352 -13 224 341 0 0 chr6 77631549 77631640 -111647914 + T-rich Low_complexity Low_complexity 1 91 0 189 0 0 0 chr6 77631941 77631962 -111647592 + (TTCTC)n Simple_repeat Simple_repeat 4 24 0 1320 261 102 44 chr6 77632063 77632653 -111646901 - MLT1E3 LTR MaLR 0 624 1 44 35 0 0 chr6 77632852 77632910 -111646644 + AT_rich Low_complexity Low_complexity 1 58 0 46 33 0 0 chr6 77635766 77635826 -111643728 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr6 77636001 77636022 -111643532 + AT_rich Low_complexity Low_complexity 1 21 0 938 340 161 19 chr6 77636123 77636959 -111642595 + L2 LINE L2 1740 2694 -620 5441 157 9 37 chr6 77636967 77637814 -111641740 - L1PA13 LINE L1 -1 6162 5356 1845 123 63 0 chr6 77637814 77638114 -111641440 - AluSq SINE Alu 0 317 1 5441 157 9 37 chr6 77638114 77638682 -111640872 - L1PA13 LINE L1 -807 5356 4773 690 215 89 44 chr6 77638682 77638952 -111640602 + pTR5 LTR ERV1 743 1024 -1414 3759 140 44 42 chr6 77639021 77639708 -111639846 + LTR12 LTR ERV1 1 688 0 762 99 83 0 chr6 77639708 77639829 -111639725 + LTR12 LTR ERV1 582 712 -2 5343 197 29 2 chr6 77639829 77640899 -111638655 - L1PA13 LINE L1 -1368 4778 3677 225 0 0 0 chr6 77640899 77640924 -111638630 + (TTG)n Simple_repeat Simple_repeat 3 27 0 5343 197 29 2 chr6 77640924 77640936 -111638618 - L1PA13 LINE L1 -2469 3677 3667 2134 190 126 0 chr6 77640932 77641416 -111638138 + L1PA13 LINE L1 3121 3665 -2481 * 242 337 11 11 chr6 77641436 77641525 -111638029 + L2 LINE L2 2713 2801 -513 202 286 18 9 chr6 77641814 77641926 -111637628 + A-rich Low_complexity Low_complexity 1 113 0 26 74 0 0 chr6 77642169 77642223 -111637331 + AT_rich Low_complexity Low_complexity 1 54 0 41 82 0 0 chr6 77643271 77643368 -111636186 + AT_rich Low_complexity Low_complexity 1 97 0 22 0 0 0 chr6 77644220 77644242 -111635312 + AT_rich Low_complexity Low_complexity 1 22 0 2552 96 25 0 chr6 77644305 77644669 -111634885 - L1MA1 LINE L1 -30 6272 5900 22 35 0 0 chr6 77644849 77644878 -111634676 + AT_rich Low_complexity Low_complexity 1 29 0 183 239 0 0 chr6 77645020 77645066 -111634488 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 2274 92 0 7 chr6 77645919 77646224 -111633330 + AluSq SINE Alu 1 303 -10 1437 198 29 0 chr6 77646406 77646684 -111632870 - AluJb SINE Alu -26 286 1 297 0 0 0 chr6 77646899 77646932 -111632622 + (CA)n Simple_repeat Simple_repeat 2 34 0 447 297 123 24 chr6 77647082 77647294 -111632260 - MIR SINE MIR -11 251 19 23 86 0 0 chr6 77648653 77648711 -111630843 + AT_rich Low_complexity Low_complexity 1 58 0 766 213 125 56 chr6 77648896 77649183 -111630371 + L1 LINE L1 4890 5196 -950 1242 156 128 0 chr6 77649243 77649461 -111630093 + MER41E LTR ERV1 1 246 -266 261 0 0 0 chr6 77649679 77649708 -111629846 + (GA)n Simple_repeat Simple_repeat 2 30 0 1770 184 24 16 chr6 77651130 77651506 -111628048 - L1MA8 LINE L1 -169 6122 5744 544 349 85 28 chr6 77651926 77652324 -111627230 - LTR16A LTR ERVL -29 421 1 228 314 122 48 chr6 77652760 77652989 -111626565 + MIR SINE MIR 3 248 -14 21 57 0 0 chr6 77653264 77653299 -111626255 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 77654057 77654078 -111625476 + AT_rich Low_complexity Low_complexity 1 21 0 319 145 0 40 chr6 77654687 77654763 -111624791 + (CATA)n Simple_repeat Simple_repeat 3 75 0 342 377 50 13 chr6 77655130 77655369 -111624185 - ERVL LTR ERVL -1373 4391 4144 367 339 83 57 chr6 77655473 77655981 -111623573 - ERVL LTR ERVL -1331 3665 3145 717 362 40 20 chr6 77656306 77656704 -111622850 - ERVL LTR ERVL -1922 3074 2669 1023 246 23 0 chr6 77656783 77657043 -111622511 - L1MA8 LINE L1 -24 6267 6002 1929 130 3 3 chr6 77657358 77657643 -111621911 - AluSq SINE Alu -24 289 5 203 327 101 38 chr6 77657904 77658063 -111621491 - MIR SINE MIR -30 232 64 23 54 0 0 chr6 77659002 77659039 -111620515 + AT_rich Low_complexity Low_complexity 1 37 0 554 182 9 0 chr6 77659039 77659149 -111620405 - L1MA9 LINE L1 -22 6290 6180 3109 197 46 31 chr6 77659153 77660598 -111618956 - L1MA9 LINE L1 -89 6079 4547 731 217 44 66 chr6 77660595 77660804 -111618750 + L1 LINE L1 4271 4474 -1672 * 2329 89 3 13 chr6 77660804 77661117 -111618437 + AluY SINE Alu 1 310 -1 731 217 44 66 chr6 77661117 77661179 -111618375 + L1 LINE L1 4474 4536 -1610 367 382 20 0 chr6 77661200 77661352 -111618202 - MIR SINE MIR -77 185 31 597 236 0 0 chr6 77661417 77661591 -111617963 + (TA)n Simple_repeat Simple_repeat 1 174 0 309 207 0 0 chr6 77661605 77661692 -111617862 + (TA)n Simple_repeat Simple_repeat 1 87 0 1224 252 76 74 chr6 77661706 77661823 -111617731 - L1MB7 LINE L1 -37 6147 6032 1233 270 84 5 chr6 77661823 77662190 -111617364 - MSTD LTR MaLR 0 396 1 1224 252 76 74 chr6 77662190 77662637 -111616917 - L1MB7 LINE L1 -152 6032 5579 1496 137 13 8 chr6 77662637 77662871 -111616683 - AluSx SINE Alu -44 268 34 1224 252 76 74 chr6 77662871 77662979 -111616575 - L1MB7 LINE L1 -605 5579 5473 812 199 68 1 chr6 77663098 77663286 -111616268 - L1P4 LINE L1 -648 5520 5321 1848 219 55 2 chr6 77663289 77663745 -111615809 - L1MC1 LINE L1 -5 6328 5849 631 125 133 25 chr6 77663745 77663865 -111615689 + AluSg1 SINE Alu 1 133 -176 2619 219 71 22 chr6 77663865 77664584 -111614970 - L1MC1 LINE L1 -483 5850 5073 2827 6 0 0 chr6 77664584 77664895 -111614659 + AluY SINE Alu 1 311 0 2619 219 71 22 chr6 77664895 77665305 -111614249 - L1MC1 LINE L1 -1260 5073 4685 1636 244 28 60 chr6 77665315 77665951 -111613603 - L1MC1 LINE L1 -2074 4072 3457 2926 184 63 5 chr6 77665966 77666613 -111612941 - L1MA4 LINE L1 -5 6295 5611 720 243 0 0 chr6 77666617 77666792 -111612762 - AluSg/x SINE Alu 0 309 135 5596 220 67 20 chr6 77666793 77666920 -111612634 - L1MA4 LINE L1 -680 5620 5500 2439 73 0 13 chr6 77666920 77667235 -111612319 - AluY SINE Alu 0 311 1 5596 220 67 20 chr6 77667235 77667410 -111612144 - L1MA4 LINE L1 -800 5500 5335 1322 242 13 0 chr6 77667410 77667708 -111611846 - AluJb SINE Alu -9 303 2 5596 220 67 20 chr6 77667708 77667816 -111611738 - L1MA4 LINE L1 -965 5335 5234 2441 81 0 0 chr6 77667816 77668126 -111611428 - AluY SINE Alu -1 310 1 5596 220 67 20 chr6 77668126 77669549 -111610005 - L1MA4 LINE L1 -1066 5234 3686 1108 129 45 0 chr6 77669556 77669734 -111609820 - AluSg/x SINE Alu 0 312 127 2493 58 3 3 chr6 77669737 77670048 -111609506 - AluY SINE Alu 0 311 1 1859 207 36 10 chr6 77670957 77671344 -111608210 + MER44D DNA MER2_type 1 452 -153 362 172 43 17 chr6 77671342 77671458 -111608096 + MER44D DNA MER2_type 407 525 -80 * 185 180 0 16 chr6 77671461 77671522 -111608032 + (TA)n Simple_repeat Simple_repeat 1 60 0 338 198 25 0 chr6 77671549 77671706 -111607848 + (TA)n Simple_repeat Simple_repeat 1 161 0 416 208 24 4 chr6 77671733 77672194 -111607360 + (TA)n Simple_repeat Simple_repeat 1 470 0 320 230 115 18 chr6 77673995 77674160 -111605394 + MER53 DNA DNA 1 181 -8 320 247 14 0 chr6 77674468 77674541 -111605013 - L1MD3 LINE L1 -1191 6804 6731 227 173 123 62 chr6 77674655 77674672 -111604882 - Tigger5 DNA MER2_type -1 2322 2307 604 51 13 0 chr6 77674672 77674751 -111604803 - MADE1 DNA Mariner 0 80 1 227 173 123 62 chr6 77674751 77674814 -111604740 - Tigger5 DNA MER2_type -16 2307 2237 297 0 0 0 chr6 77676358 77676391 -111603163 + (CA)n Simple_repeat Simple_repeat 2 34 0 1102 186 29 25 chr6 77677004 77677278 -111602276 + L1MA9 LINE L1 6027 6301 -11 404 265 85 35 chr6 77677633 77677950 -111601604 + HAL1 LINE L1 822 1154 -1353 1740 267 22 13 chr6 77677964 77678417 -111601137 + L1MD1 LINE L1 19 475 -6065 1556 176 26 66 chr6 77678423 77678803 -111600751 + MLT1A1 LTR MaLR 1 365 0 1902 233 43 67 chr6 77678815 77680325 -111599229 + L1MD1 LINE L1 4747 6149 -487 1322 190 64 51 chr6 77680425 77680814 -111598740 + L1MD1 LINE L1 6235 6628 -8 352 318 55 50 chr6 77680824 77681044 -111598510 + HAL1 LINE L1 1150 1370 -1137 296 303 85 48 chr6 77681086 77681274 -111598280 - LTR16C LTR ERVL -13 478 284 189 0 0 0 chr6 77681304 77681325 -111598229 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3739 168 89 12 chr6 77681359 77682126 -111597428 - LTR1B LTR ERV1 0 826 1 248 301 21 42 chr6 77682194 77682337 -111597217 - HAL1 LINE L1 -978 1529 1390 1087 282 61 65 chr6 77682497 77683154 -111596400 + HAL1 LINE L1 1464 2117 -390 318 282 149 58 chr6 77683248 77683422 -111596132 + MER69 DNA AcHobo 6 195 -2331 21 57 0 0 chr6 77683991 77684026 -111595528 + AT_rich Low_complexity Low_complexity 1 35 0 33 85 0 0 chr6 77684689 77684771 -111594783 + AT_rich Low_complexity Low_complexity 1 82 0 234 224 17 0 chr6 77685138 77685196 -111594358 + (TAA)n Simple_repeat Simple_repeat 1 59 0 384 299 112 37 chr6 77685202 77685416 -111594138 - MIR SINE MIR -8 254 25 212 206 33 11 chr6 77685724 77685816 -111593738 + (TA)n Simple_repeat Simple_repeat 2 95 0 273 159 0 80 chr6 77686403 77686491 -111593063 - L1MC4 LINE L1 -1349 6693 6613 322 206 0 41 chr6 77686494 77686567 -111592987 + L1MCa LINE L1 1995 2064 -4362 1752 152 0 0 chr6 77686569 77686832 -111592722 - AluSq SINE Alu -26 287 25 650 177 34 11 chr6 77687330 77687505 -111592049 + (CATA)n Simple_repeat Simple_repeat 2 180 0 255 238 0 79 chr6 77687516 77687617 -111591937 + L1MC4 LINE L1 6614 6706 -1336 389 233 22 22 chr6 77687617 77687707 -111591847 + (CATG)n Simple_repeat Simple_repeat 3 92 0 487 251 0 22 chr6 77687708 77687891 -111591663 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 310 313 18 0 chr6 77687898 77688010 -111591544 + (TATG)n Simple_repeat Simple_repeat 2 115 0 810 219 37 82 chr6 77688016 77688286 -111591268 - AluJo SINE Alu -43 269 12 2450 45 3 32 chr6 77688891 77689205 -111590349 + AluY SINE Alu 1 305 -6 186 392 27 7 chr6 77689490 77689638 -111589916 - L2 LINE L2 -963 2351 2201 1621 258 96 38 chr6 77689845 77690482 -111589072 + MER76 LTR ERV 2 675 -13 224 30 30 0 chr6 77691369 77691402 -111588152 + (TC)n Simple_repeat Simple_repeat 2 35 0 708 60 0 20 chr6 77691574 77691674 -111587880 - L1PA8 LINE L1 0 6172 6075 22 0 0 0 chr6 77692857 77692879 -111586675 + AT_rich Low_complexity Low_complexity 1 22 0 1998 107 3 41 chr6 77692957 77693275 -111586279 + AluSc SINE Alu 1 306 -3 25 83 0 0 chr6 77693585 77693645 -111585909 + AT_rich Low_complexity Low_complexity 1 60 0 31 26 0 0 chr6 77693871 77693909 -111585645 + AT_rich Low_complexity Low_complexity 1 38 0 274 214 113 124 chr6 77694319 77694594 -111584960 - MLT1G LTR MaLR -224 366 95 271 206 54 54 chr6 77694702 77694794 -111584760 + MIR SINE MIR 116 207 -55 218 182 0 0 chr6 77694907 77694951 -111584603 + CT-rich Low_complexity Low_complexity 2 45 0 28 86 0 0 chr6 77695049 77695119 -111584435 + AT_rich Low_complexity Low_complexity 1 70 0 349 210 30 7 chr6 77696079 77696382 -111583172 + (TA)n Simple_repeat Simple_repeat 1 310 0 362 202 23 0 chr6 77696409 77696582 -111582972 + (TA)n Simple_repeat Simple_repeat 2 178 0 362 207 23 0 chr6 77696601 77696775 -111582779 + (TA)n Simple_repeat Simple_repeat 2 179 0 250 197 0 16 chr6 77696802 77696863 -111582691 + (TA)n Simple_repeat Simple_repeat 1 60 0 393 171 34 17 chr6 77696866 77696983 -111582571 - MER44D DNA MER2_type -80 525 407 * 1895 202 36 10 chr6 77696981 77697368 -111582186 - MER44D DNA MER2_type -153 452 1 2439 47 3 3 chr6 77698280 77698578 -111580976 + AluY SINE Alu 1 298 -13 2156 64 13 39 chr6 77698681 77698993 -111580561 + AluY SINE Alu 1 304 -7 2757 13 0 0 chr6 77700063 77700371 -111579183 - AluY SINE Alu -3 308 1 236 256 0 128 chr6 77700590 77700707 -111578847 - L2 LINE L2 -54 3259 3158 261 222 0 0 chr6 77701335 77701398 -111578156 + (TA)n Simple_repeat Simple_repeat 2 64 0 284 266 35 127 chr6 77701955 77702104 -111577450 - L1M4 LINE L1 -6331 211 89 2164 122 0 6 chr6 77702104 77702416 -111577138 - AluSg SINE Alu 0 310 1 284 266 35 127 chr6 77702416 77702495 -111577059 - L1M4 LINE L1 -6453 89 4 23 92 0 0 chr6 77702586 77702651 -111576903 + AT_rich Low_complexity Low_complexity 1 65 0 363 316 81 21 chr6 77702946 77703180 -111576374 - L1MEc LINE L1 -3992 2404 2157 21 71 0 0 chr6 77703424 77703466 -111576088 + AT_rich Low_complexity Low_complexity 1 42 0 2375 143 11 0 chr6 77703600 77703971 -111575583 + THE1C LTR MaLR 1 375 0 8811 146 19 41 chr6 77703971 77705585 -111573969 + THE1C-int LTR MaLR 1 1579 -1 1938 165 71 3 chr6 77705601 77705952 -111573602 + THE1C LTR MaLR 1 375 0 1028 203 109 60 chr6 77706697 77707082 -111572472 - Charlie1b DNA MER1_type -110 413 10 315 163 188 0 chr6 77709065 77709145 -111570409 + FLAM_A SINE Alu 39 133 0 1193 222 0 4 chr6 77709307 77709546 -111570008 - MSTB2 LTR MaLR 0 457 220 2067 199 16 37 chr6 77709558 77709995 -111569559 - MSTC LTR MaLR 0 428 1 24 0 0 0 chr6 77710824 77710848 -111568706 + AT_rich Low_complexity Low_complexity 1 24 0 1423 198 45 3 chr6 77711788 77712076 -111567478 + AluJb SINE Alu 1 300 -12 25 31 0 0 chr6 77712448 77712480 -111567074 + AT_rich Low_complexity Low_complexity 1 32 0 970 188 74 3 chr6 77712773 77713015 -111566539 + L1MA8 LINE L1 6032 6285 -6 7977 200 26 10 chr6 77713411 77714681 -111564873 + L1PA16 LINE L1 3416 4664 -1502 215 30 0 30 chr6 77714681 77714714 -111564840 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 7977 200 26 10 chr6 77714714 77716136 -111563418 + L1PA16 LINE L1 4664 6150 -16 417 184 0 34 chr6 77717145 77717292 -111562262 + GA-rich Low_complexity Low_complexity 6 147 0 28 29 0 0 chr6 77718118 77718153 -111561401 + AT_rich Low_complexity Low_complexity 1 35 0 28 91 0 0 chr6 77719436 77719513 -111560041 + AT_rich Low_complexity Low_complexity 1 77 0 294 106 0 0 chr6 77720204 77720251 -111559303 + (TG)n Simple_repeat Simple_repeat 2 48 0 243 276 35 0 chr6 77721363 77721450 -111558104 + (TATG)n Simple_repeat Simple_repeat 1 90 0 267 253 72 0 chr6 77721451 77721534 -111558020 - L1MC4 LINE L1 -1339 6703 6615 241 279 35 0 chr6 77721492 77721578 -111557976 + L1MC4 LINE L1 6615 6703 -1339 * 2016 90 3 35 chr6 77721759 77722090 -111557464 - AluSg SINE Alu 0 322 1 270 0 0 0 chr6 77722534 77722564 -111556990 + (TTA)n Simple_repeat Simple_repeat 2 31 0 490 287 96 0 chr6 77722598 77722849 -111556705 + MER114 LTR ERV 323 597 -51 24 53 0 0 chr6 77723280 77723318 -111556236 + AT_rich Low_complexity Low_complexity 1 38 0 560 208 0 0 chr6 77724013 77724119 -111555435 - FLAM_A SINE Alu -19 123 18 27 29 0 0 chr6 77724428 77724462 -111555092 + AT_rich Low_complexity Low_complexity 1 34 0 458 270 149 32 chr6 77725202 77725440 -111554114 - MER61D LTR ERV1 -10 497 263 740 278 0 11 chr6 77725484 77725660 -111553894 - LTR28 LTR ERV1 -846 174 1 857 139 54 0 chr6 77726824 77726990 -111552564 + L1MA8 LINE L1 6113 6287 -4 190 365 66 0 chr6 77727445 77727582 -111551972 + L2 LINE L2 663 808 -2506 239 254 0 18 chr6 77727655 77727666 -111551888 + MER3 DNA MER1_type 37 46 -163 282 259 232 9 chr6 77727666 77727715 -111551839 - MER3 DNA MER1_type 0 209 172 199 0 31 31 chr6 77727715 77727747 -111551807 + (TTAAA)n Simple_repeat Simple_repeat 1 32 0 282 259 232 9 chr6 77727747 77727809 -111551745 - MER3 DNA MER1_type -37 172 73 251 345 113 11 chr6 77728128 77728305 -111551249 - L2 LINE L2 -9 3304 3110 1026 277 81 88 chr6 77728771 77729291 -111550263 + LTR40a LTR ERVL 4 519 0 207 0 0 0 chr6 77729436 77729459 -111550095 + (GAA)n Simple_repeat Simple_repeat 2 24 0 445 251 118 13 chr6 77729633 77729785 -111549769 - MER69A DNA AcHobo -9 168 1 24 32 0 0 chr6 77729894 77729925 -111549629 + AT_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chr6 77730159 77730188 -111549366 + AT_rich Low_complexity Low_complexity 1 29 0 41 36 0 0 chr6 77730369 77730424 -111549130 + AT_rich Low_complexity Low_complexity 1 55 0 1964 132 0 69 chr6 77730653 77730987 -111548567 + AluSx SINE Alu 1 311 -1 2550 217 16 46 chr6 77731514 77732246 -111547308 - MER67C LTR ERV1 0 710 1 24 0 0 0 chr6 77732440 77732464 -111547090 + AT_rich Low_complexity Low_complexity 1 24 0 895 151 7 13 chr6 77732534 77732686 -111546868 + AluSc SINE Alu 159 309 0 26 50 0 0 chr6 77732820 77732860 -111546694 + AT_rich Low_complexity Low_complexity 1 40 0 25 65 0 0 chr6 77733426 77733472 -111546082 + AT_rich Low_complexity Low_complexity 1 46 0 471 193 27 4 chr6 77733502 77733735 -111545819 + (TA)n Simple_repeat Simple_repeat 1 238 0 216 160 40 0 chr6 77733805 77733855 -111545699 + (TA)n Simple_repeat Simple_repeat 1 52 0 290 265 60 8 chr6 77734563 77734680 -111544874 - Charlie8 DNA MER1_type -2242 175 53 184 309 44 105 chr6 77736670 77736851 -111542703 + L2 LINE L2 3015 3184 -88 341 364 45 8 chr6 77737124 77737256 -111542298 - L2 LINE L2 0 3272 3136 2173 70 7 0 chr6 77737281 77737567 -111541987 - L1PA7 LINE L1 -390 5764 5477 2742 74 3 5 chr6 77737568 77737935 -111541619 + L1PA7 LINE L1 5787 6152 -2 652 369 104 10 chr6 77737983 77738573 -111540981 - L2 LINE L2 -238 3075 2429 23 0 0 0 chr6 77739228 77739251 -111540303 + AT_rich Low_complexity Low_complexity 1 23 0 293 241 76 0 chr6 77739266 77739345 -111540209 + L1M4 LINE L1 4675 4759 -1387 1913 120 7 0 chr6 77739347 77739667 -111539887 + AluSq SINE Alu 1 322 0 1644 148 60 3 chr6 77739788 77740072 -111539482 + AluSg SINE Alu 1 300 -10 717 118 28 48 chr6 77740079 77740415 -111539139 + (TA)n Simple_repeat Simple_repeat 1 329 0 1500 249 200 43 chr6 77741074 77742664 -111536890 + L1MCc LINE L1 1122 2969 -3972 256 270 0 0 chr6 77743247 77743310 -111536244 - MIR SINE MIR -125 137 75 21 57 0 0 chr6 77743374 77743409 -111536145 + AT_rich Low_complexity Low_complexity 1 35 0 242 274 34 14 chr6 77743755 77743856 -111535698 + MIR SINE MIR 9 112 -112 311 254 152 14 chr6 77744348 77744486 -111535068 + L1PBb LINE L1 11 167 -6682 267 326 93 70 chr6 77744636 77744996 -111534558 + L1PBb LINE L1 549 920 -5929 5365 92 30 3 chr6 77744996 77745755 -111533799 + LTR17 LTR ERV1 1 780 0 267 326 93 70 chr6 77745755 77745793 -111533761 + L1PBb LINE L1 920 956 -5893 1923 105 20 7 chr6 77746042 77746336 -111533218 + AluY SINE Alu 1 298 -13 280 356 50 48 chr6 77746593 77746992 -111532562 + L1PA15-16 LINE L1 1164 1563 -5286 * 3554 244 50 23 chr6 77746978 77747959 -111531595 + L1PBb LINE L1 1335 2439 -4409 2373 71 3 0 chr6 77747959 77748268 -111531286 + AluY SINE Alu 1 310 -1 3554 244 50 23 chr6 77748268 77748514 -111531040 + L1PBb LINE L1 2439 2677 -4171 402 182 12 49 chr6 77748963 77749208 -111530346 + (TA)n Simple_repeat Simple_repeat 1 236 0 26 50 0 0 chr6 77749460 77749500 -111530054 + AT_rich Low_complexity Low_complexity 1 40 0 746 298 51 25 chr6 77749942 77750482 -111529072 + MLT2F LTR ERVL 3 599 -64 355 246 129 66 chr6 77750656 77750912 -111528642 + L1ME4a LINE L1 5605 5876 -245 21 82 0 0 chr6 77751178 77751227 -111528327 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr6 77751341 77751373 -111528181 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr6 77751528 77751556 -111527998 + AT_rich Low_complexity Low_complexity 1 28 0 186 67 67 0 chr6 77752327 77752372 -111527182 + (TA)n Simple_repeat Simple_repeat 1 48 0 29 0 0 0 chr6 77752373 77752402 -111527152 + AT_rich Low_complexity Low_complexity 1 29 0 213 111 0 48 chr6 77752402 77752465 -111527089 + (TTATA)n Simple_repeat Simple_repeat 4 63 0 525 79 91 22 chr6 77752481 77752891 -111526663 + (TA)n Simple_repeat Simple_repeat 1 438 0 5771 75 12 48 chr6 77753082 77753943 -111525611 - L1PA7 LINE L1 -5 6149 5320 517 103 23 0 chr6 77753943 77754030 -111525524 - Alu SINE Alu 0 310 222 29867 116 13 52 chr6 77754030 77759621 -111519933 - L1PA7 LINE L1 -826 5320 1 24 32 0 0 chr6 77760450 77760481 -111519073 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 77760947 77760968 -111518586 + AT_rich Low_complexity Low_complexity 1 21 0 335 278 92 35 chr6 77761649 77761876 -111517678 - L1M4 LINE L1 -2537 3609 3370 718 275 30 40 chr6 77761967 77762269 -111517285 - L1M4 LINE L1 -2050 4096 3798 252 217 85 57 chr6 77762274 77762380 -111517174 - L1M4 LINE L1 -2541 3605 3497 4881 231 53 45 chr6 77762767 77765545 -111514009 - L1PB3 LINE L1 -3 6151 4887 1643 187 52 19 chr6 77765569 77765932 -111513622 + THE1C LTR MaLR 1 375 0 9002 160 15 35 chr6 77765938 77766449 -111513105 + THE1C-int LTR MaLR 7 527 -1053 2658 67 3 0 chr6 77766449 77766794 -111512760 + L1PA7 LINE L1 5809 6154 0 9002 160 15 35 chr6 77766794 77767889 -111511665 + THE1C-int LTR MaLR 527 1580 0 1569 175 29 50 chr6 77767889 77768272 -111511282 + THE1C LTR MaLR 1 375 0 5351 222 17 8 chr6 77768272 77769578 -111509976 - L1PB3 LINE L1 -1279 4867 3551 263 357 49 54 chr6 77769818 77770003 -111509551 + L2 LINE L2 2881 3064 -208 688 332 82 27 chr6 77770178 77770582 -111508972 + MLT1H LTR MaLR 124 549 0 318 303 41 7 chr6 77771166 77771311 -111508243 + L1M4 LINE L1 4219 4368 -1778 521 305 60 65 chr6 77771315 77771961 -111507593 + L1M4 LINE L1 4489 5131 -1015 234 243 29 0 chr6 77772141 77772211 -111507343 + (TA)n Simple_repeat Simple_repeat 1 72 0 24 0 0 0 chr6 77772281 77772305 -111507249 + AT_rich Low_complexity Low_complexity 1 24 0 1311 211 73 52 chr6 77772661 77773101 -111506453 + L1MA9 LINE L1 5824 6272 -40 231 189 0 0 chr6 77773107 77773144 -111506410 + polypurine Low_complexity Low_complexity 4 40 0 500 177 28 14 chr6 77773144 77773285 -111506269 + GA-rich Low_complexity Low_complexity 3 145 0 2227 278 19 0 chr6 77774929 77775569 -111503985 + MLT1E1 LTR MaLR 3 654 0 22 35 0 0 chr6 77775674 77775703 -111503851 + AT_rich Low_complexity Low_complexity 1 29 0 201 138 0 0 chr6 77775780 77775809 -111503745 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 839 249 38 49 chr6 77777086 77777539 -111502015 + L1MC5 LINE L1 7464 7911 -50 1281 235 62 0 chr6 77777897 77778273 -111501281 + L1M4 LINE L1 5237 5634 -550 282 273 68 54 chr6 77778276 77778481 -111501073 - L1M4b LINE L1 -5910 949 742 444 209 115 7 chr6 77778491 77778630 -111500924 - L1M4b LINE L1 -6690 169 16 1940 135 0 3 chr6 77778847 77779135 -111500419 - AluSg SINE Alu -21 289 3 21 0 0 0 chr6 77780572 77780593 -111498961 + AT_rich Low_complexity Low_complexity 1 21 0 2024 187 9 0 chr6 77780630 77780967 -111498587 + Tigger7 DNA MER2_type 1 340 -2147 702 208 14 14 chr6 77780966 77781110 -111498444 + Tigger7 DNA MER2_type 2444 2587 0 * 30 69 0 0 chr6 77782591 77782649 -111496905 + AT_rich Low_complexity Low_complexity 1 58 0 1616 197 7 0 chr6 77782661 77782965 -111496589 + AluJb SINE Alu 3 308 -4 408 155 0 0 chr6 77782968 77783039 -111496515 + GA-rich Low_complexity Low_complexity 4 74 0 447 324 30 53 chr6 77783452 77783714 -111495840 - MLT1H LTR MaLR -269 280 25 4261 204 40 9 chr6 77783883 77784927 -111494627 + L1 LINE L1 4307 5383 -763 488 296 106 32 chr6 77784930 77785271 -111494283 - L1M4 LINE L1 -4883 1751 1442 25 31 0 0 chr6 77785272 77785304 -111494250 + AT_rich Low_complexity Low_complexity 1 32 0 2135 108 0 3 chr6 77786281 77786655 -111492899 + AluSq SINE Alu 1 373 0 3212 275 22 38 chr6 77786716 77786964 -111492590 + L1M4b LINE L1 22 273 -6586 235 0 57 0 chr6 77786964 77786999 -111492555 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1851 123 4 4 chr6 77787001 77787270 -111492284 - AluSx SINE Alu -32 280 12 3212 275 22 38 chr6 77787270 77787983 -111491571 + L1M4b LINE L1 274 970 -5889 646 259 3 10 chr6 77787983 77788271 -111491283 + MLT1A2 LTR MaLR 1 353 -21 36 82 0 0 chr6 77788374 77788459 -111491095 + AT_rich Low_complexity Low_complexity 1 85 0 599 201 14 22 chr6 77788474 77788613 -111490941 + L1M4b LINE L1 1035 1172 -5687 25 0 0 0 chr6 77789265 77789290 -111490264 + AT_rich Low_complexity Low_complexity 1 25 0 4626 100 15 3 chr6 77790923 77791603 -111487951 - L1PA10 LINE L1 -5 6163 5476 453 291 85 45 chr6 77792215 77792727 -111486827 + MLT1H1 LTR MaLR 24 555 0 7428 36 0 0 chr6 77793428 77794320 -111485234 - L1PA3 LINE L1 -5 6150 5259 4388 65 11 7 chr6 77794436 77795048 -111484506 - L1PA3 LINE L1 -1659 4487 3873 * 8375 127 20 27 chr6 77795039 77796626 -111482928 - L1P4 LINE L1 -672 5496 3922 387 297 116 57 chr6 77797629 77798067 -111481487 - L1M4 LINE L1 -6075 467 4 191 172 0 35 chr6 77798141 77798199 -111481355 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 23 33 0 0 chr6 77798211 77798241 -111481313 + AT_rich Low_complexity Low_complexity 1 30 0 26 74 0 0 chr6 77799179 77799233 -111480321 + AT_rich Low_complexity Low_complexity 1 54 0 12249 225 49 25 chr6 77799964 77803389 -111476165 - L1P3 LINE L1 -2312 4149 538 258 32 0 0 chr6 77803389 77803420 -111476134 + (CTGTG)n Simple_repeat Simple_repeat 1 31 0 12249 225 49 25 chr6 77803420 77803963 -111475591 - L1P3 LINE L1 -5923 538 10 22 35 0 0 chr6 77805010 77805039 -111474515 + AT_rich Low_complexity Low_complexity 1 29 0 1355 213 18 18 chr6 77805341 77805618 -111473936 - AluJo SINE Alu -35 277 1 510 130 0 0 chr6 77805652 77805729 -111473825 - AluSc SINE Alu -45 264 188 308 302 56 32 chr6 77805799 77805887 -111473667 + L1ME4a LINE L1 5836 5959 -162 195 129 0 0 chr6 77805887 77805918 -111473636 + (TA)n Simple_repeat Simple_repeat 1 31 0 185 91 0 30 chr6 77805930 77805963 -111473591 + (TA)n Simple_repeat Simple_repeat 1 32 0 10047 53 22 1 chr6 77805985 77808025 -111471529 - L1PA5 LINE L1 -15 6139 4068 257 49 0 0 chr6 77808637 77808678 -111470876 - L1PA6 LINE L1 0 6154 6114 476 310 0 0 chr6 77808678 77808807 -111470747 - MIR SINE MIR -130 132 4 2621 58 41 19 chr6 77809453 77809818 -111469736 - L1PA11 LINE L1 0 6174 5802 310 329 156 27 chr6 77809890 77810115 -111469439 - MIR SINE MIR -8 254 1 216 200 0 0 chr6 77811067 77811117 -111468437 + (CATA)n Simple_repeat Simple_repeat 2 51 0 787 319 89 27 chr6 77811346 77812077 -111467477 + MERVL LTR ERVL 3838 4675 -1089 6251 92 21 7 chr6 77812126 77813165 -111466389 - L1PA8 LINE L1 -11 6161 5109 258 266 26 53 chr6 77814018 77814131 -111465423 + MERVL LTR ERVL 5649 5758 -6 25 31 0 0 chr6 77814501 77814533 -111465021 + AT_rich Low_complexity Low_complexity 1 32 0 2829 233 45 14 chr6 77814606 77815843 -111463711 - L1MB4 LINE L1 -114 6066 4794 1450 213 22 12 chr6 77815843 77816163 -111463391 + MER2 DNA MER2_type 1 323 -22 3274 267 59 10 chr6 77816168 77817426 -111462128 - L1MB4 LINE L1 -1352 4794 3476 669 221 0 0 chr6 77818282 77818409 -111461145 + FLAM_C SINE Alu 1 127 -6 1051 163 74 0 chr6 77818439 77818629 -111460925 + MSTA LTR MaLR 225 428 0 459 0 0 0 chr6 77819323 77819374 -111460180 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1951 124 0 11 chr6 77819376 77819659 -111459895 - AluSx SINE Alu -32 280 1 1352 252 22 24 chr6 77819731 77820140 -111459414 - LTR52 LTR ERVL -4 417 10 28 48 0 0 chr6 77820178 77820220 -111459334 + AT_rich Low_complexity Low_complexity 1 42 0 401 305 158 12 chr6 77820625 77820789 -111458765 - MIR SINE MIR -26 236 49 23 33 0 0 chr6 77822784 77822814 -111456740 + AT_rich Low_complexity Low_complexity 1 30 0 600 204 74 34 chr6 77822842 77823018 -111456536 + L1MA9 LINE L1 6128 6310 -2 1873 108 4 8 chr6 77823731 77823991 -111455563 - AluY SINE Alu -16 295 37 242 301 41 61 chr6 77824209 77824239 -111455315 - L1PA10 LINE L1 -1 6167 6138 2774 203 34 58 chr6 77824239 77824566 -111454988 - L1PB4 LINE L1 -11 6145 5812 261 0 0 0 chr6 77824566 77824595 -111454959 + (TG)n Simple_repeat Simple_repeat 2 30 0 2774 203 34 58 chr6 77824595 77824696 -111454858 - L1PB4 LINE L1 -344 5812 5710 315 88 0 35 chr6 77824696 77824753 -111454801 - L1MA2 LINE L1 -2 6302 6248 2774 203 34 58 chr6 77824753 77825145 -111454409 - L1PB4 LINE L1 -446 5710 5344 230 298 53 20 chr6 77825192 77825343 -111454211 - L1M4 LINE L1 -1314 4832 4677 25 75 0 0 chr6 77825343 77825396 -111454158 + AT_rich Low_complexity Low_complexity 1 53 0 239 54 27 0 chr6 77825404 77825441 -111454113 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 803 229 116 52 chr6 77825443 77825806 -111453748 + LTR37A LTR ERV1 39 424 -2 689 283 30 13 chr6 77826345 77826575 -111452979 + L1MA9 LINE L1 6041 6274 -38 10664 224 28 29 chr6 77826706 77830128 -111449426 + L1PB4 LINE L1 2195 5609 -547 877 145 0 7 chr6 77830128 77830273 -111449281 + L1PA15 LINE L1 6015 6158 -7 10664 224 28 29 chr6 77830273 77830774 -111448780 + L1PB4 LINE L1 5609 6109 -47 2134 127 0 7 chr6 77830807 77831114 -111448440 + AluSx SINE Alu 1 305 -7 271 29 0 0 chr6 77831125 77831160 -111448394 - L1PB4 LINE L1 -15 6141 6107 196 274 41 14 chr6 77831223 77831296 -111448258 + MIR SINE MIR 109 183 -79 27 0 0 0 chr6 77831439 77831466 -111448088 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr6 77832179 77832205 -111447349 + AT_rich Low_complexity Low_complexity 1 26 0 603 352 64 46 chr6 77832425 77833356 -111446198 - HERVL LTR ERVL -548 5106 4159 2478 180 10 2 chr6 77834015 77834503 -111445051 - L1MA4 LINE L1 -15 6285 5794 180 0 0 0 chr6 77834503 77834523 -111445031 + (TG)n Simple_repeat Simple_repeat 1 20 0 22 111 0 0 chr6 77834525 77834624 -111444930 + AT_rich Low_complexity Low_complexity 1 99 0 439 336 37 34 chr6 77834858 77835126 -111444428 - HERVL LTR ERVL -2271 3214 2946 285 89 0 0 chr6 77835726 77835771 -111443783 + (TA)n Simple_repeat Simple_repeat 2 46 0 27 96 0 0 chr6 77836212 77836295 -111443259 + AT_rich Low_complexity Low_complexity 1 83 0 2742 123 65 0 chr6 77836343 77836731 -111442823 + MLT2A2 LTR ERVL 3 421 -32 730 67 37 0 chr6 77836731 77836866 -111442688 + (TA)n Simple_repeat Simple_repeat 2 141 0 2742 123 65 0 chr6 77836866 77836891 -111442663 + MLT2A2 LTR ERVL 421 443 -10 254 191 34 11 chr6 77836891 77836980 -111442574 + (TA)n Simple_repeat Simple_repeat 1 91 0 280 118 39 0 chr6 77836981 77837032 -111442522 + MLT2A1 LTR ERVL 390 442 -2 207 0 0 0 chr6 77837313 77837336 -111442218 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5515 35 9 0 chr6 77837345 77838010 -111441544 - L1PA3 LINE L1 -3 6152 5482 10591 34 4 1 chr6 77838010 77839321 -111440233 + L1P LINE L1 1908 3222 -2924 27 62 0 0 chr6 77840607 77840655 -111438899 + AT_rich Low_complexity Low_complexity 1 48 0 24 77 0 0 chr6 77840695 77840747 -111438807 + AT_rich Low_complexity Low_complexity 1 52 0 455 233 34 0 chr6 77840831 77840977 -111438577 + L1ME2 LINE L1 4246 4396 -1750 2334 304 34 37 chr6 77840988 77841794 -111437760 + L1PA13 LINE L1 1 803 -5984 9435 247 21 32 chr6 77841956 77842226 -111437328 + L1PA13 LINE L1 1284 1555 -5242 2110 160 14 11 chr6 77842226 77842589 -111436965 - THE1B LTR MaLR 0 364 1 9435 247 21 32 chr6 77842589 77845941 -111433613 + L1PA13 LINE L1 1555 4888 -1909 510 234 2 1 chr6 77845940 77846058 -111433496 - L1M4 LINE L1 -1492 4654 4536 * 2120 261 84 31 chr6 77846304 77847483 -111432071 + L1ME2 LINE L1 4803 6048 -116 684 306 99 0 chr6 77847672 77848057 -111431497 - L1M4 LINE L1 -1198 4948 4526 559 168 32 10 chr6 77848167 77848281 -111431273 - MLT1D LTR MaLR -3 502 400 1006 246 0 44 chr6 77848286 77848534 -111431020 - MLT1D LTR MaLR -268 237 1 238 417 20 13 chr6 77848636 77848787 -111430767 - L2 LINE L2 -556 2758 2607 899 178 12 6 chr6 77850510 77850679 -111428875 - AluSg/x SINE Alu -3 307 138 1303 226 40 3 chr6 77850689 77851066 -111428488 - L1M4 LINE L1 -2900 3246 2856 * 5381 164 39 6 chr6 77851064 77852571 -111426983 + L1MA4 LINE L1 4722 6280 -20 1828 169 27 21 chr6 77852892 77853265 -111426289 + THE1C LTR MaLR 1 375 0 25 51 0 0 chr6 77853566 77853605 -111425949 + AT_rich Low_complexity Low_complexity 1 39 0 606 61 85 6 chr6 77854468 77854633 -111424921 + (TA)n Simple_repeat Simple_repeat 1 178 0 302 175 70 21 chr6 77904638 77904781 -111374773 + (TA)n Simple_repeat Simple_repeat 1 150 0 206 84 56 70 chr6 77904782 77904853 -111374701 + (TTAA)n Simple_repeat Simple_repeat 1 70 0 195 103 35 17 chr6 77904853 77904911 -111374643 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 326 242 16 94 chr6 77905066 77905194 -111374360 + L1MC4 LINE L1 6586 6703 -1339 21 0 0 0 chr6 77905200 77905221 -111374333 + AT_rich Low_complexity Low_complexity 1 21 0 605 312 6 12 chr6 77905516 77905689 -111373865 - MER82 DNA MER2_type -1 652 481 465 202 39 0 chr6 77905793 77905897 -111373657 + Tigger6b DNA MER2_type 8 115 -1482 1079 168 5 0 chr6 77905898 77906100 -111373454 - L1MA9 LINE L1 0 6312 6110 475 250 10 0 chr6 77906106 77906210 -111373344 + MER8 DNA MER2_type 7 111 -128 2166 225 38 9 chr6 77906290 77906823 -111372731 - L1MA9 LINE L1 -200 6112 5565 354 275 106 14 chr6 77906825 77906967 -111372587 + L1 LINE L1 3001 3155 -2991 910 137 0 0 chr6 77906979 77907110 -111372444 + AluSg SINE Alu 1 131 -179 3034 229 18 4 chr6 77907131 77907852 -111371702 + L1 LINE L1 3164 3894 -2252 3194 247 17 16 chr6 77907852 77908661 -111370893 + Tigger6b DNA MER2_type 104 913 -684 1243 171 86 120 chr6 77908652 77909178 -111370376 + Tigger6b DNA MER2_type 1083 1590 -7 * 182 91 30 0 chr6 77909587 77909620 -111369934 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 243 321 19 19 chr6 77911534 77911640 -111367914 + L1ME3A LINE L1 6035 6140 -30 24 0 0 0 chr6 77912099 77912123 -111367431 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 77912211 77912233 -111367321 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr6 77912461 77912497 -111367057 + AT_rich Low_complexity Low_complexity 1 36 0 1878 142 84 29 chr6 77912725 77913070 -111366484 + THE1B LTR MaLR 1 364 0 5972 108 4 1 chr6 77913071 77913905 -111365649 + THE1B-int LTR MaLR 2 837 -743 220 289 44 26 chr6 77915084 77915198 -111364356 - MIR SINE MIR -63 199 84 24 53 0 0 chr6 77916084 77916122 -111363432 + AT_rich Low_complexity Low_complexity 1 38 0 796 264 11 0 chr6 77916763 77916945 -111362609 + AluJo SINE Alu 98 281 -31 552 237 82 36 chr6 77917186 77917380 -111362174 - MER82 DNA MER2_type -432 221 19 264 196 0 0 chr6 77917401 77917457 -111362097 - L1MC4 LINE L1 -1339 6703 6648 303 287 126 84 chr6 77917648 77918126 -111361428 + L1ME4a LINE L1 5613 6110 -11 1295 224 68 34 chr6 77918334 77918717 -111360837 + MSTD LTR MaLR 1 396 0 28 29 0 0 chr6 77918805 77918840 -111360714 + AT_rich Low_complexity Low_complexity 1 35 0 348 263 40 0 chr6 77919460 77919536 -111360018 - MIR SINE MIR -6 256 178 2427 219 85 40 chr6 77919572 77920961 -111358593 - L1MA9 LINE L1 -1 6311 4850 3454 219 28 18 chr6 77920986 77921837 -111357717 + L1 LINE L1 3253 4112 -2034 507 318 69 31 chr6 77923164 77923453 -111356101 + L1M4 LINE L1 107 406 -6136 1078 141 0 6 chr6 77923455 77923625 -111355929 - AluSc SINE Alu -21 288 120 452 108 14 14 chr6 77923627 77923701 -111355853 - AluJ/FLAM SINE Alu -228 84 11 1675 263 71 65 chr6 77923712 77924715 -111354839 + L1M4 LINE L1 400 1408 -5134 994 257 16 8 chr6 77924718 77924971 -111354583 + L1MD3 LINE L1 6685 6939 -1056 900 306 67 3 chr6 77925600 77925927 -111353627 + LTR16C LTR ERVL 136 483 -8 248 301 112 56 chr6 77926109 77926305 -111353249 - L2 LINE L2 -10 3303 3097 701 273 31 4 chr6 77927525 77927781 -111351773 - L1MD3 LINE L1 -5 7990 7728 4832 237 35 34 chr6 77928391 77930558 -111348996 - L1MC1 LINE L1 -7 6606 4437 4060 196 49 1 chr6 77930597 77931654 -111347900 - L1PB4 LINE L1 -18 6138 5024 1011 175 0 0 chr6 77931654 77931814 -111347740 + LTR8 LTR ERV1 526 685 -6 14390 192 72 82 chr6 77931820 77933833 -111345721 + HUERS-P1 LTR ERV1 1 2033 -4230 1043 71 0 22 chr6 77933833 77934017 -111345537 + (TA)n Simple_repeat Simple_repeat 1 180 0 14390 192 72 82 chr6 77934017 77934285 -111345269 + HUERS-P1 LTR ERV1 2033 2302 -3961 342 80 0 0 chr6 77934285 77934335 -111345219 + (CA)n Simple_repeat Simple_repeat 2 51 0 14390 192 72 82 chr6 77934335 77935144 -111344410 + HUERS-P1 LTR ERV1 2302 3118 -3145 396 0 0 0 chr6 77935144 77935188 -111344366 + (TG)n Simple_repeat Simple_repeat 1 44 0 14390 192 72 82 chr6 77935188 77936466 -111343088 + HUERS-P1 LTR ERV1 3118 4408 -1855 2153 84 4 0 chr6 77936466 77936787 -111342767 - AluSc SINE Alu 0 326 5 14390 192 72 82 chr6 77936787 77938589 -111340965 + HUERS-P1 LTR ERV1 4408 6263 0 2592 178 38 78 chr6 77938589 77939309 -111340245 + LTR8 LTR ERV1 1 691 0 1026 337 42 0 chr6 77939323 77939676 -111339878 - L1M2 LINE L1 -6475 374 7 4093 283 56 4 chr6 77939712 77941409 -111338145 - L1MC1 LINE L1 -2018 4408 2624 1859 198 81 60 chr6 77941490 77942328 -111337226 - L1MC1 LINE L1 -4027 2399 1452 * 6753 32 4 0 chr6 77942303 77943111 -111336443 - L1PA4 LINE L1 -2 6433 5623 441 71 0 0 chr6 77943111 77943167 -111336387 + L1P LINE L1 4542 4597 -1549 709 174 31 132 chr6 77943167 77943455 -111336099 - L1MC1 LINE L1 -4940 1486 1228 534 179 49 16 chr6 77943481 77943604 -111335950 - L1MC1 LINE L1 -5334 1092 966 23 54 0 0 chr6 77943840 77943877 -111335677 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr6 77943901 77943938 -111335616 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr6 77944524 77944551 -111335003 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr6 77944922 77944951 -111334603 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr6 77945993 77946032 -111333522 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 77946062 77946083 -111333471 + AT_rich Low_complexity Low_complexity 1 21 0 1509 180 3 24 chr6 77946853 77947147 -111332407 + AluJo SINE Alu 25 312 0 39 38 0 0 chr6 77948417 77948470 -111331084 + AT_rich Low_complexity Low_complexity 1 53 0 29037 137 11 48 chr6 77948863 77955250 -111324304 - L1PA7 LINE L1 -5 6149 12 25 51 0 0 chr6 77955330 77955369 -111324185 + AT_rich Low_complexity Low_complexity 1 39 0 351 316 83 0 chr6 77956208 77956341 -111323213 - MIR SINE MIR -17 245 102 1086 291 85 23 chr6 77956490 77956971 -111322583 - LTR40a LTR ERVL -2 517 7 1227 244 35 7 chr6 77956992 77957275 -111322279 - AluJo SINE Alu -8 294 4 22 0 0 0 chr6 77957398 77957420 -111322134 + AT_rich Low_complexity Low_complexity 1 22 0 759 247 12 6 chr6 77958337 77958503 -111321051 - AluJo SINE Alu -145 167 1 240 404 40 9 chr6 77958914 77959142 -111320412 + MIR SINE MIR 25 259 -3 21 0 0 0 chr6 77959829 77959850 -111319704 + AT_rich Low_complexity Low_complexity 1 21 0 316 261 18 27 chr6 77959899 77960010 -111319544 + L1MEc LINE L1 1646 1755 -4641 529 315 51 64 chr6 77960081 77960532 -111319022 + L1MEc LINE L1 1893 2337 -4059 1268 246 50 89 chr6 77960532 77961149 -111318405 + MLT1E LTR MaLR 1 593 0 1858 98 0 0 chr6 77961173 77961438 -111318116 - L1P LINE L1 -1131 5015 4751 6705 66 14 5 chr6 77961438 77962536 -111317018 + L1PA7 LINE L1 5049 6154 0 422 298 108 37 chr6 77962552 77963412 -111316142 + L1MEc LINE L1 2315 3235 -2980 23 0 0 0 chr6 77963530 77963553 -111316001 + AT_rich Low_complexity Low_complexity 1 23 0 279 254 0 0 chr6 77963949 77964020 -111315534 + (TA)n Simple_repeat Simple_repeat 2 72 0 21 57 0 0 chr6 77964743 77964778 -111314776 + AT_rich Low_complexity Low_complexity 1 35 0 1124 191 59 95 chr6 77964903 77965291 -111314263 + MLT1A2 LTR MaLR 1 374 0 237 383 9 0 chr6 77965722 77965837 -111313717 - L2 LINE L2 0 3313 3198 786 242 5 15 chr6 77965843 77966041 -111313513 + MLT1B LTR MaLR 3 198 -192 28 0 0 0 chr6 77966572 77966600 -111312954 + AT_rich Low_complexity Low_complexity 1 28 0 3800 80 0 12 chr6 77966614 77967128 -111312426 + L1PA7 LINE L1 5636 6143 -11 239 246 80 91 chr6 77967667 77967866 -111311688 + MLT1H LTR MaLR 95 291 -258 406 309 51 88 chr6 77968095 77968506 -111311048 + MLT1J LTR MaLR 30 425 -86 230 242 16 65 chr6 77968662 77968724 -111310830 - L2 LINE L2 -9 3304 3246 182 173 19 58 chr6 77969097 77969149 -111310405 - L2 LINE L2 -963 2351 2302 344 195 26 26 chr6 77969308 77969445 -111310109 + GA-rich Low_complexity Low_complexity 1 137 0 267 300 25 0 chr6 77969550 77969630 -111309924 - L2 LINE L2 -5 3308 3227 21 0 0 0 chr6 77970064 77970085 -111309469 + AT_rich Low_complexity Low_complexity 1 21 0 449 336 63 56 chr6 77970181 77970577 -111308977 - MLT1J2 LTR MaLR -29 421 23 25 0 0 0 chr6 77970582 77970607 -111308947 + AT_rich Low_complexity Low_complexity 1 25 0 319 338 53 2 chr6 77970688 77970919 -111308635 - HERVL LTR ERVL -3326 2328 2128 23 33 0 0 chr6 77971347 77971377 -111308177 + AT_rich Low_complexity Low_complexity 1 30 0 2404 53 33 0 chr6 77971669 77971969 -111307585 - AluY SINE Alu 0 311 2 22 35 0 0 chr6 77974583 77974612 -111304942 + AT_rich Low_complexity Low_complexity 1 29 0 29 60 0 0 chr6 77975261 77975311 -111304243 + AT_rich Low_complexity Low_complexity 1 50 0 1598 175 3 3 chr6 77975311 77975602 -111303952 + L1P LINE L1 4433 4723 -1423 2425 166 4 37 chr6 77975602 77976066 -111303488 - LTR1 LTR ERV1 0 785 337 304 257 89 40 chr6 77976178 77976380 -111303174 + L1MD3 LINE L1 7007 7218 -777 438 108 0 0 chr6 77976380 77976445 -111303109 + (TA)n Simple_repeat Simple_repeat 1 65 0 331 282 48 0 chr6 77976445 77976548 -111303006 + MLT1F1 LTR MaLR 16 123 -444 609 269 129 0 chr6 77976549 77976750 -111302804 + L1MD3 LINE L1 7403 7629 -366 1327 257 101 10 chr6 77976750 77977264 -111302290 - Charlie1a DNA MER1_type -849 606 46 23 86 0 0 chr6 77977419 77977477 -111302077 + AT_rich Low_complexity Low_complexity 1 58 0 250 238 0 0 chr6 77977614 77977677 -111301877 + L1MC4 LINE L1 6641 6703 -1339 1355 158 41 0 chr6 77978192 77978413 -111301141 + MER30 DNA MER1_type 1 230 0 251 172 35 11 chr6 77978423 77978499 -111301055 + (TA)n Simple_repeat Simple_repeat 1 81 -8 996 9 0 0 chr6 77978499 77978613 -111300941 - L1PA2 LINE L1 -5 6150 6037 251 172 35 11 chr6 77978613 77978623 -111300931 + (TA)n Simple_repeat Simple_repeat 81 89 0 883 210 55 21 chr6 77978632 77978870 -111300684 - THE1C LTR MaLR -129 246 1 22 0 0 0 chr6 77979692 77979714 -111299840 + AT_rich Low_complexity Low_complexity 1 22 0 906 281 113 40 chr6 77980683 77981189 -111298365 + MLT1H LTR MaLR 3 545 -4 33 0 0 0 chr6 77981596 77981629 -111297925 + AT_rich Low_complexity Low_complexity 1 33 0 1307 87 34 53 chr6 77982152 77982358 -111297196 + AluSg/x SINE Alu 81 282 -30 249 33 0 0 chr6 77982365 77982395 -111297159 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 32 26 0 0 chr6 77982477 77982516 -111297038 + AT_rich Low_complexity Low_complexity 1 39 0 339 334 78 86 chr6 77983688 77983817 -111295737 + L2 LINE L2 2598 2727 -545 748 239 53 10 chr6 77983817 77984026 -111295528 - MER20 DNA MER1_type 0 219 2 339 334 78 86 chr6 77984026 77984575 -111294979 + L2 LINE L2 2727 3272 0 636 325 120 8 chr6 77986241 77986641 -111292913 + LTR16C LTR ERVL 36 480 -11 243 146 0 0 chr6 77987679 77987720 -111291834 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr6 77988538 77988559 -111290995 + AT_rich Low_complexity Low_complexity 1 21 0 1124 247 13 53 chr6 77989839 77990219 -111289335 - MLT1A1 LTR MaLR 0 365 1 243 0 0 0 chr6 77990905 77990932 -111288622 + (CAA)n Simple_repeat Simple_repeat 1 27 0 191 279 58 35 chr6 77991721 77991807 -111287747 + L2 LINE L2 2152 2239 -1075 743 172 166 0 chr6 77992201 77992352 -111287202 + MSTA LTR MaLR 19 194 -234 4606 71 19 15 chr6 77992352 77993384 -111286170 - MER11A LTR ERVK 0 1266 1 1496 130 4 36 chr6 77993385 77993632 -111285922 + MSTA LTR MaLR 190 428 0 233 259 74 0 chr6 77994278 77994359 -111285195 - MER103 DNA DNA -52 114 28 537 291 32 8 chr6 77994779 77994974 -111284580 + L1ME3 LINE L1 5518 5709 -461 302 303 290 7 chr6 77995199 77995344 -111284210 - MER5A DNA MER1_type 0 189 4 21 36 0 0 chr6 77995849 77995877 -111283677 + AT_rich Low_complexity Low_complexity 1 28 0 6535 75 24 0 chr6 77995980 77997605 -111281949 + L1PA7 LINE L1 4508 6154 0 267 320 68 0 chr6 77997664 77997767 -111281787 + L1ME3 LINE L1 5974 6083 -79 228 309 167 36 chr6 77997893 77998061 -111281493 - MIR SINE MIR -72 190 1 28 0 0 0 chr6 77998082 77998110 -111281444 + AT_rich Low_complexity Low_complexity 1 28 0 226 320 40 70 chr6 77998124 77998224 -111281330 + L2 LINE L2 3169 3265 -7 213 175 25 38 chr6 77998256 77998336 -111281218 + (TTA)n Simple_repeat Simple_repeat 2 80 0 28 29 0 0 chr6 77998390 77998425 -111281129 + AT_rich Low_complexity Low_complexity 1 35 0 654 279 108 35 chr6 77998987 77999385 -111280169 - L1ME1 LINE L1 -5 6161 5735 26 30 0 0 chr6 77999412 77999445 -111280109 + AT_rich Low_complexity Low_complexity 1 33 0 415 340 56 64 chr6 77999490 77999864 -111279690 - L2 LINE L2 -2 3311 2941 318 331 135 59 chr6 78000037 78000526 -111279028 - L2 LINE L2 -574 2740 2215 203 301 108 0 chr6 78000691 78000774 -111278780 - L2 LINE L2 -1413 1901 1810 423 354 26 10 chr6 78000796 78000991 -111278563 - L2 LINE L2 -1635 1679 1482 29 0 0 0 chr6 78000991 78001020 -111278534 + AT_rich Low_complexity Low_complexity 1 29 0 2341 69 23 0 chr6 78001150 78001455 -111278099 + AluSp SINE Alu 1 312 -1 545 148 0 0 chr6 78001579 78001667 -111277887 - 5S rRNA rRNA -31 90 3 1722 153 0 14 chr6 78002163 78002497 -111277057 - AluSx SINE Alu 0 330 1 836 196 289 0 chr6 78002581 78002806 -111276748 + AluJo SINE Alu 1 290 -12 22 70 0 0 chr6 78003314 78003357 -111276197 + AT_rich Low_complexity Low_complexity 1 43 0 29 0 0 0 chr6 78003387 78003416 -111276138 + AT_rich Low_complexity Low_complexity 1 29 0 9639 45 6 0 chr6 78003474 78005438 -111274116 + L1PA5 LINE L1 4183 6145 -9 22 0 0 0 chr6 78005438 78005460 -111274094 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 78005576 78005599 -111273955 + AT_rich Low_complexity Low_complexity 1 23 0 182 380 76 44 chr6 78006659 78006817 -111272737 + L2 LINE L2 3048 3210 -62 213 336 73 35 chr6 78008127 78008359 -111271195 + L2 LINE L2 1731 1971 -1343 25 31 0 0 chr6 78008680 78008712 -111270842 + AT_rich Low_complexity Low_complexity 1 32 0 326 338 86 7 chr6 78008901 78009052 -111270502 + L2 LINE L2 2199 2361 -953 1004 222 26 119 chr6 78010046 78010433 -111269121 + MLT1A2 LTR MaLR 11 361 -13 372 287 10 0 chr6 78011178 78011279 -111268275 - MER74C LTR ERVL -349 111 10 22 70 0 0 chr6 78011612 78011655 -111267899 + AT_rich Low_complexity Low_complexity 1 43 0 347 355 55 22 chr6 78013528 78013711 -111265843 + MIR SINE MIR 13 201 -61 197 333 13 0 chr6 78014355 78014433 -111265121 - MIR SINE MIR -116 146 68 281 279 36 27 chr6 78014627 78014738 -111264816 - MER94 DNA DNA -22 112 1 2217 72 0 24 chr6 78014799 78015092 -111264462 + AluY SINE Alu 1 286 -25 3637 28 0 0 chr6 78015092 78015525 -111264029 + L1PA4 LINE L1 5720 6152 -3 207 0 0 0 chr6 78016431 78016454 -111263100 + (CA)n Simple_repeat Simple_repeat 2 24 0 264 149 0 0 chr6 78016836 78016883 -111262671 + (TCC)n Simple_repeat Simple_repeat 3 49 0 1865 108 0 0 chr6 78016888 78017137 -111262417 - AluSx SINE Alu -53 259 11 343 294 87 40 chr6 78017144 78017419 -111262135 + L1ME LINE L1 655 942 -5128 1098 270 50 60 chr6 78017610 78018511 -111261043 + L1M4 LINE L1 4157 5048 -1098 413 298 159 23 chr6 78018544 78018890 -111260664 + L1MCc LINE L1 51 443 -5980 853 317 57 7 chr6 78019200 78019620 -111259934 + L1MCc LINE L1 1035 1475 -4948 * 9880 50 1 1 chr6 78019618 78020885 -111258669 - L1PA5 LINE L1 -2425 3721 2455 13286 50 2 2 chr6 78020885 78023328 -111256226 + L1PA5 LINE L1 3715 6150 -4 778 251 65 55 chr6 78023329 78023871 -111255683 + L1MCc LINE L1 1469 2015 -4926 1049 267 139 29 chr6 78024046 78024499 -111255055 + MLT1D LTR MaLR 1 503 -2 331 313 69 12 chr6 78024502 78024662 -111254892 + L1MCc LINE L1 2423 2591 -4531 722 292 61 22 chr6 78024851 78025310 -111254244 + L1MCc LINE L1 2926 3402 -3539 4417 147 36 19 chr6 78025313 78026096 -111253458 + L1PA13 LINE L1 5368 6163 0 2554 279 77 17 chr6 78026091 78027431 -111252123 + L1MCc LINE L1 3391 4810 -2131 * 326 193 0 91 chr6 78027476 78027564 -111251990 - L1ME LINE L1 -571 5595 5516 201 317 0 0 chr6 78028439 78028499 -111251055 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 362 308 239 32 chr6 78029968 78030516 -111249038 - L2 LINE L2 0 3313 2600 877 284 76 32 chr6 78030672 78031042 -111248512 - L2 LINE L2 -744 2570 2185 523 266 31 8 chr6 78031067 78031195 -111248359 - MER5B DNA MER1_type -3 175 45 2546 148 5 5 chr6 78031810 78032244 -111247310 - L1PA14 LINE L1 -13 6148 5715 424 86 29 0 chr6 78032424 78032494 -111247060 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 267 244 21 160 chr6 78033973 78034211 -111245343 - MIR SINE MIR -1 261 57 350 287 0 52 chr6 78034548 78034684 -111244870 + L1MC4 LINE L1 6599 6727 -1315 267 31 0 0 chr6 78034942 78034974 -111244580 + (CA)n Simple_repeat Simple_repeat 1 32 0 511 281 176 14 chr6 78035101 78035322 -111244232 + MIR SINE MIR 6 262 0 217 313 0 15 chr6 78035396 78035463 -111244091 + MIR SINE MIR 166 231 -31 26 50 0 0 chr6 78036483 78036523 -111243031 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr6 78036725 78036750 -111242804 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr6 78037652 78037687 -111241867 + AT_rich Low_complexity Low_complexity 1 35 0 2270 197 13 11 chr6 78037996 78038452 -111241102 + Tigger1 DNA MER2_type 1 457 -1961 1408 107 19 0 chr6 78038462 78038667 -111240887 + AluSg/x SINE Alu 104 312 0 670 79 10 20 chr6 78038669 78038770 -111240784 + Tigger1 DNA MER2_type 817 916 -1502 1049 208 26 0 chr6 78038996 78039222 -111240332 + Tigger1 DNA MER2_type 2187 2418 0 2439 118 6 3 chr6 78039488 78039851 -111239703 - THE1B LTR MaLR 0 364 1 9806 124 20 31 chr6 78039851 78041448 -111238106 - THE1B-int LTR MaLR 0 1580 1 2609 110 0 0 chr6 78041450 78041806 -111237748 - THE1B LTR MaLR -8 356 1 2011 198 21 37 chr6 78042565 78042995 -111236559 - MSTC LTR MaLR 0 428 6 591 197 24 24 chr6 78043835 78043962 -111235592 + FRAM SINE Alu 20 146 -30 330 45 0 0 chr6 78043963 78044007 -111235547 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 2292 42 21 7 chr6 78045089 78045375 -111234179 - AluY SINE Alu -20 291 2 674 170 0 0 chr6 78045771 78045906 -111233648 - AluJb SINE Alu 0 306 172 1467 194 11 11 chr6 78046010 78046289 -111233265 - LTR1 LTR ERV1 -506 279 1 15301 167 33 35 chr6 78046289 78048580 -111230974 - HUERS-P2 LTR ERV1 0 3088 801 4636 68 3 2 chr6 78048580 78049181 -111230373 + L1PA7 LINE L1 5553 6154 0 15301 167 33 35 chr6 78049181 78049763 -111229791 - HUERS-P2 LTR ERV1 -2287 801 220 2140 166 122 14 chr6 78049925 78050757 -111228797 + L1PA11 LINE L1 4715 5649 -525 3138 115 55 0 chr6 78050858 78051353 -111228201 + L1PA11 LINE L1 5651 6172 -2 214 191 0 0 chr6 78051362 78051404 -111228150 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 2359 79 0 0 chr6 78051882 78052173 -111227381 - AluY SINE Alu -16 295 5 870 206 79 21 chr6 78052831 78053020 -111226534 + THE1B LTR MaLR 1 200 -164 7150 129 7 7 chr6 78053164 78054226 -111225328 + THE1B-int LTR MaLR 494 1555 -25 1965 149 52 23 chr6 78054226 78054574 -111224980 + THE1B LTR MaLR 7 364 0 23 54 0 0 chr6 78054897 78054934 -111224620 + AT_rich Low_complexity Low_complexity 1 37 0 375 281 135 21 chr6 78054993 78055185 -111224369 + L1ME LINE L1 5514 5727 -457 186 71 0 0 chr6 78055238 78055266 -111224288 + (TA)n Simple_repeat Simple_repeat 1 28 0 25 95 0 0 chr6 78055276 78055350 -111224204 + AT_rich Low_complexity Low_complexity 1 74 0 1067 160 5 41 chr6 78055727 78055921 -111223633 - LTR59 LTR ERV1 -6 591 405 538 312 88 10 chr6 78056149 78056457 -111223097 + L1MCc LINE L1 1141 1472 -4951 398 360 62 4 chr6 78056485 78056743 -111222811 - L1ME3 LINE L1 -79 6083 5811 233 229 0 0 chr6 78057377 78057425 -111222129 - MLT2D LTR ERVL 0 414 367 192 109 36 18 chr6 78057425 78057480 -111222074 + (TG)n Simple_repeat Simple_repeat 2 57 0 597 91 0 0 chr6 78057541 78057618 -111221936 - AluSp SINE Alu -121 192 116 1579 171 81 31 chr6 78057999 78058356 -111221198 + THE1C LTR MaLR 1 375 0 7576 147 62 58 chr6 78058356 78059830 -111219724 + THE1C-int LTR MaLR 1 1480 -100 3330 114 29 39 chr6 78059930 78060275 -111219279 + MER41-int LTR ERV1 4474 4812 -1134 666 135 29 0 chr6 78060275 78060379 -111219175 + U6 snRNA snRNA 1 107 0 3330 114 29 39 chr6 78060379 78060592 -111218962 + MER41-int LTR ERV1 4812 5026 -920 1274 150 31 18 chr6 78060634 78060861 -111218693 + MER41-int LTR ERV1 5554 5783 -1422 195 42 0 0 chr6 78060879 78060903 -111218651 + (GA)n Simple_repeat Simple_repeat 1 24 0 264 171 69 40 chr6 78061244 78061419 -111218135 + (TA)n Simple_repeat Simple_repeat 1 180 0 5258 192 10 5 chr6 78061500 78062822 -111216732 - L1MA3 LINE L1 0 7724 6399 2267 217 30 41 chr6 78062809 78063575 -111215979 - L1MA3 LINE L1 -3370 4195 3423 * 2845 44 0 0 chr6 78063590 78063931 -111215623 - L1P LINE L1 -1874 4272 3932 601 91 0 0 chr6 78063931 78064019 -111215535 - AluY SINE Alu -8 303 216 1308 167 41 0 chr6 78064119 78064389 -111215165 - L1MA3 LINE L1 -4839 2726 2446 * 29782 121 12 57 chr6 78064373 78070809 -111208745 - L1PA7 LINE L1 -7 6147 9 3984 254 44 31 chr6 78070818 78071775 -111207779 - L1MA3 LINE L1 -5099 2466 1523 2129 108 0 3 chr6 78071775 78072062 -111207492 + AluSp SINE Alu 1 286 -27 3984 254 44 31 chr6 78072062 78072846 -111206708 - L1MA3 LINE L1 -6042 1523 11 23 33 0 0 chr6 78073441 78073471 -111206083 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr6 78073603 78073639 -111205915 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 78073948 78073969 -111205585 + AT_rich Low_complexity Low_complexity 1 21 0 684 307 63 20 chr6 78074187 78074490 -111205064 + Charlie2 DNA MER1_type 3 318 -2544 1722 146 30 14 chr6 78074589 78074884 -111204670 + AluSq SINE Alu 1 300 -13 2069 120 10 7 chr6 78074933 78075241 -111204313 - AluSg SINE Alu -1 309 1 326 313 126 52 chr6 78075245 78075575 -111203979 - L1 LINE L1 -2136 4010 3656 216 0 0 0 chr6 78075998 78076022 -111203532 + (A)n Simple_repeat Simple_repeat 1 24 0 26 88 0 0 chr6 78076112 78076180 -111203374 + AT_rich Low_complexity Low_complexity 1 68 0 25 51 0 0 chr6 78076473 78076512 -111203042 + AT_rich Low_complexity Low_complexity 1 39 0 288 319 118 8 chr6 78076996 78077115 -111202439 + L2 LINE L2 2913 3044 -269 43 20 0 0 chr6 78077146 78077196 -111202358 + AT_rich Low_complexity Low_complexity 1 50 0 267 349 179 5 chr6 78077297 78077492 -111202062 + L2 LINE L2 3080 3308 -5 28 48 0 0 chr6 78077621 78077663 -111201891 + AT_rich Low_complexity Low_complexity 1 42 0 1616 101 26 26 chr6 78077663 78077930 -111201624 - L1MA1 LINE L1 0 6302 6036 2097 94 10 13 chr6 78078138 78078437 -111201117 + AluY SINE Alu 1 298 -13 23 0 0 0 chr6 78079113 78079136 -111200418 + AT_rich Low_complexity Low_complexity 1 23 0 303 323 54 63 chr6 78079232 78079582 -111199972 + L1MEc LINE L1 23 369 -6027 331 345 21 7 chr6 78079950 78080092 -111199462 + L1MEc LINE L1 785 928 -5468 547 250 0 0 chr6 78080221 78080365 -111199189 + L1MEc LINE L1 2671 2814 -3401 353 302 135 24 chr6 78080372 78081002 -111198552 + L1ME1 LINE L1 994 1693 -4703 1266 303 101 8 chr6 78081015 78082177 -111197377 + L1ME1 LINE L1 1807 3039 -3176 1683 279 106 25 chr6 78082230 78083420 -111196134 + L1ME1 LINE L1 4173 5627 -608 1781 194 27 0 chr6 78083420 78083756 -111195798 - MER7A DNA MER2_type 0 346 4 1683 279 106 25 chr6 78083756 78084090 -111195464 + L1ME1 LINE L1 5627 5933 -302 2590 35 3 0 chr6 78084354 78084664 -111194890 - AluY SINE Alu 0 311 1 21 0 0 0 chr6 78085035 78085056 -111194498 + AT_rich Low_complexity Low_complexity 1 21 0 193 402 103 0 chr6 78085911 78085998 -111193556 + L2 LINE L2 3144 3239 -33 1876 172 35 30 chr6 78086454 78086849 -111192705 - Tigger2a DNA MER2_type -37 397 1 954 236 76 32 chr6 78086924 78087238 -111192316 - MLT1A2 LTR MaLR -46 328 1 23 33 0 0 chr6 78087655 78087685 -111191869 + AT_rich Low_complexity Low_complexity 1 30 0 217 135 92 7 chr6 78089293 78089434 -111190120 + (TA)n Simple_repeat Simple_repeat 2 154 0 288 211 54 14 chr6 78089447 78089594 -111189960 + (TA)n Simple_repeat Simple_repeat 2 154 0 21 71 0 0 chr6 78089756 78089798 -111189756 + AT_rich Low_complexity Low_complexity 1 42 0 30 0 0 0 chr6 78090049 78090079 -111189475 + AT_rich Low_complexity Low_complexity 1 30 0 1981 148 72 17 chr6 78090103 78090448 -111189106 + THE1B LTR MaLR 1 364 0 8202 106 19 1 chr6 78090448 78091602 -111187952 + THE1B-int LTR MaLR 1 1175 -405 2316 245 89 7 chr6 78091604 78092334 -111187220 - L1MC2 LINE L1 -237 6387 5598 248 169 46 0 chr6 78092329 78092394 -111187160 - L1PA15 LINE L1 0 6165 6098 * 2888 153 0 0 chr6 78092737 78093221 -111186333 - L1PA13 LINE L1 0 6163 5680 8065 178 16 14 chr6 78093243 78094852 -111184702 - L1PA13 LINE L1 -1228 4918 3307 23 0 0 0 chr6 78094970 78094993 -111184561 + AT_rich Low_complexity Low_complexity 1 23 0 11745 243 33 16 chr6 78094993 78099062 -111180492 - L1PA16 LINE L1 -9 6157 2002 225 0 0 0 chr6 78099062 78099087 -111180467 + (TG)n Simple_repeat Simple_repeat 1 25 0 11745 243 33 16 chr6 78099087 78099670 -111179884 - L1PA16 LINE L1 -4164 2002 1430 1523 254 31 8 chr6 78099706 78100186 -111179368 - L1MC2 LINE L1 -953 5473 4983 901 232 21 47 chr6 78100190 78100423 -111179131 - AluJo SINE Alu -53 259 33 659 267 53 15 chr6 78100440 78100702 -111178852 - L1MC2 LINE L1 -1483 4943 4672 420 313 23 8 chr6 78100700 78100962 -111178592 - L1MC2 LINE L1 -3110 3316 3051 * 1595 236 40 6 chr6 78101042 78101512 -111178042 - L1MC2 LINE L1 -5166 1260 775 662 271 89 40 chr6 78101515 78101817 -111177737 - L1MC2 LINE L1 -6054 372 56 2712 106 25 5 chr6 78101817 78102213 -111177341 + MLT2A1 LTR ERVL 1 404 -40 319 99 14 42 chr6 78102213 78102284 -111177270 + (TA)n Simple_repeat Simple_repeat 1 69 0 279 140 0 20 chr6 78102290 78102340 -111177214 + MLT2A1 LTR ERVL 472 520 0 1174 306 38 13 chr6 78102397 78102947 -111176607 - L1M4c LINE L1 -4588 2371 1808 186 43 0 0 chr6 78102987 78103010 -111176544 + (TG)n Simple_repeat Simple_repeat 2 24 0 1427 194 56 3 chr6 78103026 78103314 -111176240 - MLT2D LTR ERVL -92 322 20 3271 238 77 66 chr6 78103385 78103561 -111175993 - L1M4c LINE L1 -5052 1803 1630 660 242 0 0 chr6 78103561 78103693 -111175861 - FLAM_C SINE Alu -1 132 1 3271 238 77 66 chr6 78103693 78104716 -111174838 - L1M4c LINE L1 -5225 1630 594 1393 344 70 2 chr6 78104737 78105255 -111174299 - L1M4c LINE L1 -6299 560 8 3639 192 52 26 chr6 78105399 78106225 -111173329 + L1MC1 LINE L1 5481 6332 -1 240 35 0 0 chr6 78107441 78107470 -111172084 + (A)n Simple_repeat Simple_repeat 1 29 0 219 325 114 35 chr6 78107686 78107800 -111171754 - L2 LINE L2 0 3272 3150 21 57 0 0 chr6 78108023 78108058 -111171496 + AT_rich Low_complexity Low_complexity 1 35 0 38 0 0 0 chr6 78109024 78109062 -111170492 + AT_rich Low_complexity Low_complexity 1 38 0 2463 76 3 3 chr6 78109425 78109753 -111169801 - L1PA7 LINE L1 -19 6135 5808 746 307 44 16 chr6 78110075 78110326 -111169228 + MIR SINE MIR 4 261 -1 30 59 0 0 chr6 78110509 78110560 -111168994 + AT_rich Low_complexity Low_complexity 1 51 0 425 314 35 12 chr6 78110727 78110896 -111168658 - MIR SINE MIR -15 247 75 532 300 21 21 chr6 78111110 78111300 -111168254 - MER58C DNA MER1_type -15 200 11 23 33 0 0 chr6 78111758 78111788 -111167766 + AT_rich Low_complexity Low_complexity 1 30 0 2487 217 14 21 chr6 78111852 78112429 -111167125 - L1 LINE L1 -1966 4180 3608 23 0 0 0 chr6 78112549 78112572 -111166982 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr6 78112779 78112809 -111166745 + AT_rich Low_complexity Low_complexity 1 30 0 21 104 0 0 chr6 78112875 78112952 -111166602 + AT_rich Low_complexity Low_complexity 1 77 0 314 302 96 62 chr6 78113763 78114137 -111165417 - L1M4 LINE L1 -2097 4049 3663 1631 193 44 29 chr6 78114285 78114669 -111164885 + MLT1B LTR MaLR 1 390 0 258 291 48 48 chr6 78115568 78115671 -111163883 + L2 LINE L2 3210 3312 -1 246 200 0 46 chr6 78117101 78117166 -111162388 - L1MCa LINE L1 -4359 2067 2006 579 68 0 107 chr6 78117338 78117441 -111162113 + L1PA13 LINE L1 5661 5752 -422 24 32 0 0 chr6 78117510 78117541 -111162013 + AT_rich Low_complexity Low_complexity 1 31 0 2327 97 29 0 chr6 78117680 78118020 -111161534 + L1PA13 LINE L1 5795 6144 -19 219 69 0 0 chr6 78118027 78118056 -111161498 + (CAA)n Simple_repeat Simple_repeat 2 30 0 762 146 0 165 chr6 78118813 78118971 -111160583 - MLT1C LTR MaLR -46 421 213 2276 83 0 0 chr6 78120937 78121239 -111158315 + AluY SINE Alu 1 302 -9 460 256 111 48 chr6 78121496 78121740 -111157814 + L1ME3A LINE L1 1531 1795 -4601 2392 67 0 0 chr6 78121740 78122040 -111157514 + AluY SINE Alu 1 300 -11 460 256 111 48 chr6 78122040 78122065 -111157489 + L1ME3A LINE L1 1795 1817 -4579 289 261 65 35 chr6 78122280 78122510 -111157044 + L1ME3A LINE L1 2095 2331 -4065 24 32 0 0 chr6 78122612 78122643 -111156911 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr6 78122680 78122725 -111156829 + AT_rich Low_complexity Low_complexity 1 45 0 295 322 110 41 chr6 78122767 78123504 -111156050 + L1ME3A LINE L1 4685 5472 -743 993 260 108 19 chr6 78123791 78124307 -111155247 + L1ME3A LINE L1 5486 6047 -192 600 347 91 17 chr6 78124581 78125139 -111154415 + L2 LINE L2 2462 3056 -257 267 31 0 0 chr6 78125284 78125316 -111154238 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6691 72 1 5 chr6 78125317 78126942 -111152612 - L1PA7 LINE L1 -17 6137 4515 5437 93 17 3 chr6 78126942 78127726 -111151828 + L1PA7 LINE L1 3716 4510 -1636 254 327 64 51 chr6 78127923 78128079 -111151475 - MLT1J LTR MaLR -253 258 101 207 0 0 0 chr6 78129093 78129116 -111150438 + (T)n Simple_repeat Simple_repeat 1 23 0 1167 191 0 0 chr6 78129701 78129942 -111149612 + L1MA4 LINE L1 6045 6285 -15 249 33 0 0 chr6 78130102 78130171 -111149383 + (TG)n Simple_repeat Simple_repeat 1 99 0 249 33 0 0 chr6 78130171 78130201 -111149353 + (TG)n Simple_repeat Simple_repeat 1 30 0 220 329 0 13 chr6 78130370 78130449 -111149105 + L2 LINE L2 3236 3313 0 1788 195 112 25 chr6 78130569 78131052 -111148502 - L1MA5 LINE L1 0 6300 5776 1168 168 5 5 chr6 78131054 78131263 -111148291 + L1MA5 LINE L1 5563 5771 -529 24 32 0 0 chr6 78131677 78131708 -111147846 + AT_rich Low_complexity Low_complexity 1 31 0 28 48 0 0 chr6 78131736 78131778 -111147776 + AT_rich Low_complexity Low_complexity 1 42 0 7654 19 0 0 chr6 78131783 78132949 -111146605 - L1PA2 LINE L1 0 6155 4987 500 0 0 0 chr6 78132950 78133005 -111146549 + L1PA2 LINE L1 4924 4978 -1168 2301 131 8 22 chr6 78133203 78133570 -111145984 + THE1B LTR MaLR 3 364 0 10585 123 10 5 chr6 78133570 78135142 -111144412 + THE1B-int LTR MaLR 1 1580 0 2229 140 14 32 chr6 78135142 78135513 -111144041 + THE1B LTR MaLR 1 364 0 225 284 23 11 chr6 78136864 78136952 -111142602 + L1MC4 LINE L1 6615 6703 -1339 * 234 237 11 43 chr6 78136928 78137021 -111142533 - L1MC4 LINE L1 -1339 6703 6614 365 239 8 0 chr6 78137028 78137145 -111142409 + (TA)n Simple_repeat Simple_repeat 2 119 0 283 167 73 10 chr6 78137158 78137254 -111142300 + (TA)n Simple_repeat Simple_repeat 2 103 0 605 149 37 0 chr6 78137370 78137477 -111142077 + HY1 scRNA scRNA 1 111 -1 812 176 0 0 chr6 78138154 78138307 -111141247 - L1MB1 LINE L1 -1 6167 6015 182 239 0 22 chr6 78138336 78138382 -111141172 - L2 LINE L2 -678 2636 2592 2050 131 0 6 chr6 78138813 78139125 -111140429 + AluSx SINE Alu 3 312 0 338 122 0 0 chr6 78139903 78139952 -111139602 - MADE1 DNA Mariner 0 80 32 40 107 0 0 chr6 78140000 78140159 -111139395 + AT_rich Low_complexity Low_complexity 1 159 0 21 36 0 0 chr6 78140277 78140305 -111139249 + AT_rich Low_complexity Low_complexity 1 28 0 645 241 14 57 chr6 78140682 78140894 -111138660 - MER3 DNA MER1_type -6 203 1 3332 219 77 26 chr6 78145002 78145090 -111134464 + L1MD2 LINE L1 5354 5436 -923 1376 154 97 84 chr6 78145090 78145272 -111134282 + THE1C LTR MaLR 1 179 -196 207 0 0 0 chr6 78145272 78145295 -111134259 + (TC)n Simple_repeat Simple_repeat 1 23 0 1376 154 97 84 chr6 78145295 78145482 -111134072 + THE1C LTR MaLR 179 375 0 7946 167 13 63 chr6 78145484 78147144 -111132410 + MSTA-int LTR MaLR 3 1580 0 1663 158 166 40 chr6 78147144 78147524 -111132030 + MSTA LTR MaLR 1 428 0 3332 219 77 26 chr6 78147524 78148387 -111131167 + L1MD2 LINE L1 5435 6358 -1 29 47 0 0 chr6 78148764 78148807 -111130747 + AT_rich Low_complexity Low_complexity 1 43 0 28 29 0 0 chr6 78149392 78149427 -111130127 + AT_rich Low_complexity Low_complexity 1 35 0 216 182 0 0 chr6 78149887 78149931 -111129623 + (TA)n Simple_repeat Simple_repeat 2 45 0 262 200 0 0 chr6 78149938 78149998 -111129556 + L1MC4 LINE L1 6649 6708 -1334 2094 196 35 12 chr6 78150389 78150903 -111128651 - L1MA6 LINE L1 -1 6299 5774 22 0 0 0 chr6 78151845 78151867 -111127687 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 78152067 78152088 -111127466 + AT_rich Low_complexity Low_complexity 1 21 0 276 383 57 16 chr6 78153475 78153668 -111125886 + MIR SINE MIR 6 206 -56 223 314 0 78 chr6 78154332 78154434 -111125120 - MIR3 SINE MIR -32 176 83 632 212 131 5 chr6 78154895 78155001 -111124553 + MER33 DNA MER1_type 6 97 -2488 207 0 0 0 chr6 78155001 78155024 -111124530 + (TA)n Simple_repeat Simple_repeat 1 23 0 632 212 131 5 chr6 78155024 78155139 -111124415 + MER33 DNA MER1_type 97 255 -69 288 106 21 0 chr6 78155878 78155925 -111123629 - MADE1 DNA Mariner 0 80 33 1161 263 97 3 chr6 78156166 78156508 -111123046 + HsTC2 DNA Tc2 1314 1687 -211 3500 215 47 50 chr6 78157043 78158069 -111121485 - Tigger6a DNA MER2_type -53 1030 8 12117 155 47 7 chr6 78158117 78160256 -111119298 + Tigger1 DNA MER2_type 1 2225 -193 558 108 0 0 chr6 78160257 78160340 -111119214 + (TA)n Simple_repeat Simple_repeat 2 84 0 1734 100 0 13 chr6 78160340 78160579 -111118975 - AluSq SINE Alu -10 303 68 7245 262 30 34 chr6 78360634 78363600 -110915954 - HERVH LTR ERV1 -4130 3589 821 552 228 35 108 chr6 78363959 78364301 -110915253 - LTR7 LTR ERV1 0 450 134 372 383 36 15 chr6 78364556 78364885 -110914669 - L1MEc LINE L1 -5941 455 120 278 167 0 0 chr6 78364987 78365035 -110914519 + MLT2C2 LTR ERVL 417 464 0 401 264 32 71 chr6 78365041 78365196 -110914358 + MLT1-int LTR MaLR 1061 1209 -162 287 150 17 0 chr6 78365332 78365392 -110914162 + (CA)n Simple_repeat Simple_repeat 2 62 0 1282 295 94 15 chr6 78365634 78366282 -110913272 - L1MC4a LINE L1 -1854 5954 5256 439 341 59 35 chr6 78366357 78366865 -110912689 - L1MC4a LINE L1 -997 5149 4630 279 0 0 0 chr6 78367042 78367073 -110912481 + (TTA)n Simple_repeat Simple_repeat 3 33 0 7008 22 0 0 chr6 78367073 78367876 -110911678 - L1PA3 LINE L1 -18 6137 5335 5678 25 0 0 chr6 78367872 78368539 -110911015 + L1P LINE L1 3650 4316 -1830 * 3381 149 4 19 chr6 78368639 78369405 -110910149 - HERVH LTR ERV1 -3992 3721 2795 2408 129 20 56 chr6 78369412 78369860 -110909694 + HERVH LTR ERV1 1027 1458 -6255 11791 129 32 28 chr6 78369862 78372318 -110907236 - HERVH LTR ERV1 -4925 2788 1 2290 125 56 51 chr6 78372318 78372766 -110906788 - LTR7 LTR ERV1 0 450 1 5813 117 22 0 chr6 78372766 78373722 -110905832 + L1PA10 LINE L1 5175 6149 -19 207 0 0 0 chr6 78373722 78373745 -110905809 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 521 253 72 24 chr6 78373755 78374048 -110905506 + Charlie2 DNA MER1_type 1768 2074 -788 1396 242 28 62 chr6 78374138 78374526 -110905028 - MLT2D LTR ERVL -40 480 3 396 150 203 60 chr6 78374548 78374681 -110904873 + Charlie2 DNA MER1_type 2145 2296 -566 735 289 37 66 chr6 78374831 78375240 -110904314 + L1MCb LINE L1 242 638 -5407 419 276 42 14 chr6 78375243 78375460 -110904094 - L1MC4a LINE L1 -1656 4490 4268 2726 132 25 21 chr6 78375460 78376048 -110903506 - MER4E LTR ERV1 0 779 1 1110 274 60 41 chr6 78376048 78376524 -110903030 - L1MC4a LINE L1 -1875 4271 3779 2983 166 46 75 chr6 78376524 78377235 -110902319 - LTR8 LTR ERV1 0 691 1 1110 274 60 41 chr6 78377235 78377390 -110902164 - L1MC4a LINE L1 -2367 3779 3628 1241 228 44 51 chr6 78377392 78377816 -110901738 + MER39 LTR ERV1 1 603 -104 2560 44 3 0 chr6 78377817 78378133 -110901421 - L1PA2 LINE L1 -1119 5027 4711 7810 17 0 0 chr6 78378133 78379253 -110900301 + L1PA2 LINE L1 5032 6151 -4 548 222 120 113 chr6 78379304 78379746 -110899808 - LTR7 LTR ERV1 -5 445 1 7377 262 20 13 chr6 78379746 78381821 -110897733 - HERVH LTR ERV1 0 7713 5625 6177 262 16 2 chr6 78381854 78383429 -110896125 - HERVH LTR ERV1 -2202 5511 3918 1573 82 14 0 chr6 78383530 78383738 -110895816 - AluSg SINE Alu -99 211 1 971 222 111 135 chr6 78383739 78384478 -110895076 - L1MC3 LINE L1 -1608 6595 5911 * 2104 264 74 9 chr6 78384455 78385239 -110894315 - L1MC3 LINE L1 -1216 5348 4514 2161 154 13 61 chr6 78385260 78385735 -110893819 - L1MB1 LINE L1 -3 6165 5714 1814 257 48 3 chr6 78385767 78386355 -110893199 + L1 LINE L1 4152 4765 -1381 * 2515 249 19 6 chr6 78386352 78387076 -110892478 - L1MC3 LINE L1 -2039 4525 3792 1535 201 3 13 chr6 78387154 78387468 -110892086 - AluJb SINE Alu -1 311 1 237 33 0 0 chr6 78387622 78387652 -110891902 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 361 241 69 43 chr6 78387652 78387803 -110891751 - L1MC3 LINE L1 -5911 295 1 364 308 72 46 chr6 78387852 78388089 -110891465 - HAL1 LINE L1 -1447 1060 818 26 88 0 0 chr6 78388654 78388722 -110890832 + AT_rich Low_complexity Low_complexity 1 68 0 6042 114 5 15 chr6 78389362 78390417 -110889137 + L1PA11 LINE L1 5123 6162 -12 5369 113 1 16 chr6 78390417 78391255 -110888299 - L1P LINE L1 -1678 4468 3643 5906 85 11 1 chr6 78391411 78392239 -110887315 + L1PA8A LINE L1 5294 6168 -6 4025 146 6 10 chr6 78393796 78394117 -110885437 - L1ME1 LINE L1 -7 6159 5838 3777 37 2 0 chr6 78394117 78394573 -110884981 - L1PA3 LINE L1 -3 6152 5696 4025 146 6 10 chr6 78394573 78395509 -110884045 - L1ME1 LINE L1 -328 5838 4912 3208 65 0 0 chr6 78395505 78395933 -110883621 + L1P LINE L1 1005 1432 -4714 * 517 316 0 0 chr6 78396021 78396192 -110883362 - L1ME LINE L1 -395 5771 5601 633 222 150 0 chr6 78396355 78396522 -110883032 + L1MC3 LINE L1 7154 7345 -440 239 193 18 18 chr6 78398264 78398321 -110881233 + (TATG)n Simple_repeat Simple_repeat 4 60 0 22 35 0 0 chr6 78398369 78398398 -110881156 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 78398444 78398473 -110881081 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr6 78399622 78399648 -110879906 + AT_rich Low_complexity Low_complexity 1 26 0 205 138 17 35 chr6 78399943 78400001 -110879553 + (TAA)n Simple_repeat Simple_repeat 3 59 0 29 28 0 0 chr6 78400037 78400073 -110879481 + AT_rich Low_complexity Low_complexity 1 36 0 2943 102 4 0 chr6 78400969 78401422 -110878132 - L1P LINE L1 -2815 3331 2877 4891 73 25 5 chr6 78401422 78402087 -110877467 + L1PA7 LINE L1 5466 6146 -8 2404 113 6 3 chr6 78402623 78402977 -110876577 - THE1A LTR MaLR 0 355 1 23 78 0 0 chr6 78404511 78404562 -110874992 + AT_rich Low_complexity Low_complexity 1 51 0 296 302 107 12 chr6 78405010 78405179 -110874375 + MIR SINE MIR 76 260 -2 34 55 0 0 chr6 78407161 78407216 -110872338 + AT_rich Low_complexity Low_complexity 1 55 0 205 214 57 0 chr6 78407303 78407373 -110872181 + (TA)n Simple_repeat Simple_repeat 2 75 0 1419 177 26 46 chr6 78407503 78407808 -110871746 + AluJo SINE Alu 1 299 -3 22 56 0 0 chr6 78407823 78407859 -110871695 + AT_rich Low_complexity Low_complexity 1 36 0 420 348 113 23 chr6 78407949 78408463 -110871091 + L2 LINE L2 2712 3306 -7 1966 142 10 6 chr6 78408728 78409039 -110870515 - AluSx SINE Alu 0 312 1 303 36 455 0 chr6 78409214 78409269 -110870285 + MADE1 DNA Mariner 1 80 0 1818 154 7 3 chr6 78412338 78412631 -110866923 + AluSq SINE Alu 3 296 -17 9046 104 22 0 chr6 78412646 78414764 -110864790 + L1PA7 LINE L1 4007 6150 -4 1679 189 0 0 chr6 78414816 78415107 -110864447 - AluSx SINE Alu -21 291 1 1062 192 33 60 chr6 78416097 78416430 -110863124 + MER33 DNA MER1_type 1 324 0 23 0 0 0 chr6 78417049 78417072 -110862482 + AT_rich Low_complexity Low_complexity 1 23 0 198 143 0 0 chr6 78417534 78417569 -110861985 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 298 127 28 0 chr6 78417598 78417669 -110861885 + (TA)n Simple_repeat Simple_repeat 2 74 0 873 141 8 0 chr6 78417669 78417797 -110861757 - AluSq/x SINE Alu -184 129 1 186 43 0 0 chr6 78417800 78417823 -110861731 + (TG)n Simple_repeat Simple_repeat 2 24 0 1444 192 0 45 chr6 78418391 78418704 -110860850 - AluJo SINE Alu -7 305 7 1139 181 22 13 chr6 78419114 78419340 -110860214 - L1 LINE L1 -1870 4345 4118 958 262 69 18 chr6 78419362 78419810 -110859744 - L1MEc LINE L1 -3413 2802 2353 712 311 35 14 chr6 78419837 78420126 -110859428 - L1MEc LINE L1 -6067 329 35 3027 144 88 0 chr6 78420301 78420835 -110858719 - L1PA16 LINE L1 -6 6160 5580 448 188 10 10 chr6 78421796 78421897 -110857657 - L1MC1 LINE L1 0 6333 6233 232 316 65 14 chr6 78422766 78422905 -110856649 - L1MC4 LINE L1 -1124 6918 6773 602 291 8 96 chr6 78423061 78423322 -110856232 + MIR SINE MIR 8 245 -17 322 273 33 16 chr6 78424248 78424369 -110855185 + CT-rich Low_complexity Low_complexity 2 124 0 711 187 60 0 chr6 78424492 78424626 -110854928 + MLT1A1 LTR MaLR 212 353 -12 688 225 22 40 chr6 78424629 78424851 -110854703 - L1MC3 LINE L1 -66 7719 7502 444 209 84 52 chr6 78424834 78425101 -110854453 - L1MCb LINE L1 -4590 1974 1588 * 3968 169 29 6 chr6 78425109 78425809 -110853745 - MER50 LTR ERV1 -18 716 1 2871 250 56 31 chr6 78425809 78426505 -110853049 - L1MCb LINE L1 -4851 1194 828 5225 91 63 21 chr6 78426505 78427298 -110852256 + LTR12 LTR ERV1 1 826 0 2871 250 56 31 chr6 78427298 78428147 -110851407 - L1MCb LINE L1 -5217 828 1 221 238 12 36 chr6 78428396 78428480 -110851074 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 22 0 0 0 chr6 78429847 78429869 -110849685 + AT_rich Low_complexity Low_complexity 1 22 0 5862 135 103 31 chr6 78430005 78431211 -110848343 + pTR5 LTR ERV1 743 2034 -404 260 271 12 0 chr6 78431214 78431299 -110848255 + LTR30 LTR ERV1 558 643 -79 1384 125 10 10 chr6 78431301 78431537 -110848017 + pTR5 LTR ERV1 69 392 -2046 235 226 19 0 chr6 78431739 78431792 -110847762 - MIR SINE MIR -103 159 106 322 370 34 7 chr6 78431978 78432124 -110847430 - MIR SINE MIR -112 150 1 31 88 0 0 chr6 78432271 78432351 -110847203 + AT_rich Low_complexity Low_complexity 1 80 0 308 377 78 0 chr6 78433339 78433506 -110846048 + MER5A DNA MER1_type 7 186 -3 207 300 50 62 chr6 78433563 78433723 -110845831 + MIR SINE MIR 105 262 0 242 299 28 19 chr6 78433918 78434025 -110845529 + L2 LINE L2 2524 2631 -683 21 0 0 0 chr6 78434146 78434167 -110845387 + AT_rich Low_complexity Low_complexity 1 21 0 288 331 55 28 chr6 78434542 78434687 -110844867 + L2 LINE L2 3124 3272 0 257 178 0 0 chr6 78434757 78434802 -110844752 - L1MC4 LINE L1 -1340 6702 6658 246 105 35 18 chr6 78434825 78434882 -110844672 + (TA)n Simple_repeat Simple_repeat 2 59 0 184 98 24 24 chr6 78435230 78435271 -110844283 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 212 205 0 0 chr6 78435511 78435550 -110844004 - MIR SINE MIR -108 154 116 462 343 64 27 chr6 78435676 78436115 -110843439 - L2 LINE L2 -131 3182 2733 633 249 85 0 chr6 78436136 78436325 -110843229 - L1MB7 LINE L1 -5 6179 5975 1550 216 14 3 chr6 78436979 78437276 -110842278 - AluJb SINE Alu -4 308 9 180 0 0 0 chr6 78437879 78437899 -110841655 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2038 125 0 0 chr6 78437901 78438188 -110841366 - AluSx SINE Alu -25 287 1 279 211 28 14 chr6 78439136 78439207 -110840347 + MIR SINE MIR 118 189 -73 25 0 0 0 chr6 78440362 78440387 -110839167 + AT_rich Low_complexity Low_complexity 1 25 0 1163 224 54 1 chr6 78441375 78441680 -110837874 - MER58B DNA MER1_type 0 341 1 24 32 0 0 chr6 78442181 78442212 -110837342 + AT_rich Low_complexity Low_complexity 1 31 0 1549 215 29 29 chr6 78443131 78443480 -110836074 - MLT1A1 LTR MaLR -16 349 1 28 48 0 0 chr6 78443483 78443525 -110836029 + AT_rich Low_complexity Low_complexity 1 42 0 283 311 121 30 chr6 78443584 78443716 -110835838 - MER5A DNA MER1_type -3 186 43 244 313 97 28 chr6 78443599 78443743 -110835811 + MER5A DNA MER1_type 33 186 -3 * 336 391 31 45 chr6 78444023 78444312 -110835242 + L1M2a LINE L1 1559 1843 -5325 1865 265 56 18 chr6 78444407 78445009 -110834545 + L1M2a LINE L1 1898 2533 -4635 2081 117 10 7 chr6 78445009 78445317 -110834237 - AluSp SINE Alu -3 310 2 1865 265 56 18 chr6 78445317 78445596 -110833958 + L1M2a LINE L1 2533 2800 -4368 781 217 49 76 chr6 78445628 78446139 -110833415 - L1MB7 LINE L1 -389 5775 5325 1252 134 25 0 chr6 78446139 78446340 -110833214 - L1PA13 LINE L1 -4 6159 5954 1004 105 11 17 chr6 78446340 78446521 -110833033 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 182 128 43 0 chr6 78446541 78446588 -110832966 + CT-rich Low_complexity Low_complexity 3 51 0 655 274 61 5 chr6 78446590 78446767 -110832787 - AluJo SINE Alu -3 309 117 396 0 0 0 chr6 78446767 78446811 -110832743 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 655 274 61 5 chr6 78446811 78446845 -110832709 - AluJo SINE Alu -195 117 86 4587 261 69 13 chr6 78446846 78448863 -110830691 + L1MCa LINE L1 1640 3894 -2532 205 211 0 0 chr6 78449072 78449110 -110830444 + A-rich Low_complexity Low_complexity 1 38 0 2221 209 91 17 chr6 78449331 78449934 -110829620 + L1MCa LINE L1 3902 4549 -1877 936 220 26 17 chr6 78449938 78450170 -110829384 - Tigger1 DNA MER2_type -1 2417 2184 9056 163 32 17 chr6 78450170 78450916 -110828638 - Tigger1 DNA MER2_type -433 1985 1252 2167 109 0 3 chr6 78450916 78451210 -110828344 + AluY SINE Alu 4 296 -15 9056 163 32 17 chr6 78451210 78452125 -110827429 - Tigger1 DNA MER2_type -1166 1252 299 578 88 0 0 chr6 78452129 78452209 -110827345 + AluSg/x SINE Alu 214 293 -16 4605 204 46 14 chr6 78452216 78452888 -110826666 + L1MA2 LINE L1 11 723 -6842 189 0 0 0 chr6 78452888 78452909 -110826645 + (GGAGA)n Simple_repeat Simple_repeat 5 25 0 4605 204 46 14 chr6 78452909 78453173 -110826381 + L1MA2 LINE L1 723 977 -6588 * 10462 198 36 27 chr6 78453170 78456226 -110823328 + L1MA2 LINE L1 2705 5802 -1763 1757 163 7 0 chr6 78456226 78456515 -110823039 + AluSq SINE Alu 4 294 -19 10462 198 36 27 chr6 78456515 78456933 -110822621 + L1MA2 LINE L1 5802 6214 -1351 2795 140 8 14 chr6 78456930 78457415 -110822139 + L1MA2 LINE L1 7138 7619 -104 * 971 109 49 6 chr6 78457420 78457603 -110821951 + L1MA6 LINE L1 6110 6300 0 321 263 53 26 chr6 78457676 78457828 -110821726 + L1MEc LINE L1 954 1109 -5287 450 317 78 42 chr6 78457851 78458211 -110821343 + L1MEc LINE L1 1131 1503 -4712 534 309 15 0 chr6 78458236 78458440 -110821114 + L1MEc LINE L1 1588 1794 -4602 3769 152 14 2 chr6 78458586 78459205 -110820349 - MER41B LTR ERV1 -8 627 1 555 164 0 0 chr6 78459406 78459510 -110820044 + MLT2B3 LTR ERVL 1 104 -450 216 319 0 0 chr6 78459628 78459675 -110819879 - MIR SINE MIR -174 88 42 236 279 0 0 chr6 78459838 78459899 -110819655 + GA-rich Low_complexity Low_complexity 1 61 0 567 294 31 0 chr6 78459939 78460102 -110819452 + MER5B DNA MER1_type 4 171 -7 807 194 76 46 chr6 78460154 78460391 -110819163 + LTR49 LTR ERV1 1 244 -351 1824 101 8 19 chr6 78460393 78460661 -110818893 + THE1C LTR MaLR 111 375 0 1489 135 4 0 chr6 78460701 78460946 -110818608 + L1MA1 LINE L1 6057 6302 0 29 28 0 0 chr6 78460946 78460982 -110818572 + AT_rich Low_complexity Low_complexity 1 36 0 791 188 0 97 chr6 78460982 78461189 -110818365 + MER41-int LTR ERV1 4398 4584 -1362 408 70 18 0 chr6 78461190 78461247 -110818307 - MER4C LTR ERV1 0 465 408 776 261 84 4 chr6 78461247 78461473 -110818081 + L1MD2 LINE L1 5845 6088 -271 2026 124 60 49 chr6 78461474 78461844 -110817710 + MSTA LTR MaLR 1 374 -54 789 114 200 0 chr6 78461853 78461993 -110817561 - MER4C LTR ERV1 -40 425 258 8220 182 64 39 chr6 78461994 78464078 -110815476 - MER4C-int LTR ERV1 -1484 5114 3085 1943 156 0 9 chr6 78464078 78464393 -110815161 - AluSx SINE Alu 0 312 1 8220 182 64 39 chr6 78464393 78465916 -110813638 - MER4C-int LTR ERV1 -3513 3085 1602 2295 98 3 0 chr6 78465916 78466213 -110813341 + AluSp SINE Alu 1 298 -15 8220 182 64 39 chr6 78466213 78466233 -110813321 - MER4C-int LTR ERV1 -4996 1602 1584 378 0 0 0 chr6 78466233 78466275 -110813279 + (CA)n Simple_repeat Simple_repeat 2 43 0 8220 182 64 39 chr6 78466275 78467322 -110812232 - MER4C-int LTR ERV1 -5014 1584 1 2753 111 71 0 chr6 78467325 78467759 -110811795 - MER4C LTR ERV1 0 465 1 6376 169 93 29 chr6 78467764 78469227 -110810327 + LTR49-int LTR ERV1 4773 6328 -3 1803 202 103 29 chr6 78469229 78469783 -110809771 + LTR49 LTR ERV1 1 595 0 374 303 0 0 chr6 78469851 78469940 -110809614 - MER5A DNA MER1_type -83 106 18 199 281 35 0 chr6 78469967 78470024 -110809530 + MER5A DNA MER1_type 45 103 -86 27 62 0 0 chr6 78470254 78470302 -110809252 + AT_rich Low_complexity Low_complexity 1 48 0 443 345 97 50 chr6 78470359 78470835 -110808719 + Charlie2b DNA MER1_type 172 669 -2113 676 235 51 30 chr6 78470940 78471174 -110808380 + Charlie2a DNA MER1_type 1496 1734 -1128 6911 152 10 2 chr6 78471220 78472405 -110807149 + L1P LINE L1 3985 5179 -967 2229 141 62 21 chr6 78472405 78472837 -110806717 - LTR7 LTR ERV1 0 450 1 3398 132 6 16 chr6 78472837 78473384 -110806170 - HERVH LTR ERV1 0 7713 7173 853 131 0 29 chr6 78473380 78473517 -110806037 - HERVH LTR ERV1 -424 7289 7157 * 2251 156 26 5 chr6 78473510 78473928 -110805626 - HERVH LTR ERV1 -1697 6016 5590 * 5912 123 12 2 chr6 78473919 78474807 -110804747 - HERVH LTR ERV1 -2564 5149 4253 7664 29 4 29 chr6 78474907 78475878 -110803676 + L1P LINE L1 4307 5253 -893 280 167 83 42 chr6 78476865 78476937 -110802617 - MLT1J LTR MaLR -49 462 388 265 272 37 24 chr6 78477148 78477281 -110802273 - MLT1L LTR MaLR -373 138 1 25 31 0 0 chr6 78478170 78478202 -110801352 + AT_rich Low_complexity Low_complexity 1 32 0 185 0 0 39 chr6 78478335 78478361 -110801193 + (TTA)n Simple_repeat Simple_repeat 2 26 0 897 119 0 14 chr6 78478470 78478613 -110800941 - L1PA15 LINE L1 -7 6158 6018 23 33 0 0 chr6 78478866 78478896 -110800658 + AT_rich Low_complexity Low_complexity 1 30 0 394 296 161 34 chr6 78479247 78479678 -110799876 - L2 LINE L2 -1 3312 2937 330 0 0 57 chr6 78479678 78479731 -110799823 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 1912 124 4 4 chr6 78479735 78480010 -110799544 - AluSg SINE Alu -35 275 1 394 296 161 34 chr6 78480010 78480046 -110799508 - L2 LINE L2 -378 2935 2681 1322 242 21 15 chr6 78480077 78480408 -110799146 - MLT1A2 LTR MaLR -41 333 1 197 348 209 0 chr6 78480555 78480670 -110798884 - L2 LINE L2 -700 2614 2476 202 203 29 14 chr6 78480797 78480866 -110798688 + (TATAA)n Simple_repeat Simple_repeat 1 70 0 21 36 0 0 chr6 78481222 78481250 -110798304 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr6 78481283 78481308 -110798246 + AT_rich Low_complexity Low_complexity 1 25 0 181 57 57 0 chr6 78481346 78481381 -110798173 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 188 29 0 88 chr6 78481743 78481777 -110797777 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2722 238 28 66 chr6 78481806 78481948 -110797606 - L1P LINE L1 -2688 3458 3312 2009 123 7 3 chr6 78481948 78482257 -110797297 - AluSg SINE Alu 0 310 1 2722 238 28 66 chr6 78482257 78482268 -110797286 - L1P LINE L1 -2834 3312 3302 2755 119 77 8 chr6 78482268 78482746 -110796808 + MER9 LTR ERVK 1 511 0 2722 238 28 66 chr6 78482746 78483265 -110796289 - L1P LINE L1 -2844 3302 2855 2284 93 0 3 chr6 78483265 78483576 -110795978 - AluY SINE Alu -1 310 1 2722 238 28 66 chr6 78483576 78483848 -110795706 - L1P LINE L1 -3291 2855 2574 9127 180 11 24 chr6 78483853 78486571 -110792983 + L1PA14 LINE L1 3435 6159 -2 545 212 119 0 chr6 78486700 78486818 -110792736 + FLAM_C SINE Alu 2 133 0 31 0 0 0 chr6 78487183 78487214 -110792340 + AT_rich Low_complexity Low_complexity 1 31 0 306 106 0 0 chr6 78487254 78487301 -110792253 + (CA)n Simple_repeat Simple_repeat 2 48 0 932 247 115 31 chr6 78487694 78488147 -110791407 + Charlie4a DNA MER1_type 7 497 -11 1535 260 106 25 chr6 78488147 78489249 -110790305 - L1MCa LINE L1 -3502 2924 1733 * 6159 205 41 78 chr6 78489237 78491181 -110788373 - L1MC3 LINE L1 0 7785 5915 2122 113 6 0 chr6 78491188 78491499 -110788055 - AluSp SINE Alu 0 313 1 15870 186 59 16 chr6 78491512 78496023 -110783531 - L1MC3 LINE L1 -169 7616 2903 6505 111 2 31 chr6 78496023 78496987 -110782567 + L1P LINE L1 1886 2820 -3326 2252 119 3 0 chr6 78496987 78497299 -110782255 + AluSp SINE Alu 1 313 0 6505 111 2 31 chr6 78497299 78497364 -110782190 + L1P LINE L1 2820 2885 -3261 239 350 21 63 chr6 78498517 78498660 -110780894 - L2 LINE L2 -212 3060 2924 2005 223 8 0 chr6 78498710 78499095 -110780459 + MER66A LTR ERV1 21 408 -70 1064 186 21 5 chr6 78499096 78499289 -110780265 - MER66A LTR ERV1 -134 344 149 1850 194 9 20 chr6 78499326 78499671 -110779883 + MLT1A1 LTR MaLR 25 365 0 29 0 0 0 chr6 78500239 78500268 -110779286 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 78500680 78500705 -110778849 + AT_rich Low_complexity Low_complexity 1 25 0 238 263 0 0 chr6 78500720 78500777 -110778777 + T-rich Low_complexity Low_complexity 2 58 0 1857 212 5 13 chr6 78500845 78501223 -110778331 + THE1C LTR MaLR 1 375 0 8656 129 14 83 chr6 78501223 78502920 -110776634 + THE1C-int LTR MaLR 1 1580 0 2074 150 24 19 chr6 78502920 78503293 -110776261 + THE1C LTR MaLR 1 375 0 2175 183 8 0 chr6 78503583 78503983 -110775571 + MER57A LTR ERV1 1 403 0 384 246 63 69 chr6 78504362 78504537 -110775017 - MLT1J LTR MaLR -327 184 11 499 309 66 25 chr6 78504693 78504936 -110774618 + MIR SINE MIR 8 260 -2 1827 129 0 85 chr6 78505020 78505361 -110774193 + AluSx SINE Alu 1 312 0 21 0 0 0 chr6 78508253 78508274 -110771280 + AT_rich Low_complexity Low_complexity 1 21 0 224 103 26 0 chr6 78508870 78508909 -110770645 + MER5A DNA MER1_type 30 69 -120 779 290 24 16 chr6 78508984 78509239 -110770315 + MIR SINE MIR 3 259 -3 2279 77 0 0 chr6 78509249 78509535 -110770019 + AluSg1 SINE Alu 11 296 -13 201 147 0 0 chr6 78510008 78510042 -110769512 + (TA)n Simple_repeat Simple_repeat 2 35 0 21 71 0 0 chr6 78510941 78510983 -110768571 + AT_rich Low_complexity Low_complexity 1 42 0 601 346 191 11 chr6 78512451 78512911 -110766643 - L2 LINE L2 -285 3028 2490 21 0 0 0 chr6 78514477 78514498 -110765056 + AT_rich Low_complexity Low_complexity 1 21 0 808 243 141 45 chr6 78518441 78518774 -110760780 + MLT1A1 LTR MaLR 1 365 0 1931 132 26 0 chr6 78519687 78519990 -110759564 - AluJb SINE Alu -1 311 1 25 31 0 0 chr6 78520392 78520424 -110759130 + AT_rich Low_complexity Low_complexity 1 32 0 25 90 0 0 chr6 78520667 78520734 -110758820 + AT_rich Low_complexity Low_complexity 1 67 0 638 193 8 25 chr6 78521259 78521378 -110758176 + FLAM_C SINE Alu 13 129 -14 307 197 16 0 chr6 78521722 78521783 -110757771 - LTR16B LTR ERVL -11 453 392 398 176 0 0 chr6 78522328 78522396 -110757158 - MSTD LTR MaLR 0 396 329 684 318 85 66 chr6 78522611 78523542 -110756012 - HERV16 LTR ERVL -547 4449 3554 303 71 0 0 chr6 78523542 78523584 -110755970 + (CA)n Simple_repeat Simple_repeat 2 43 0 684 318 85 66 chr6 78523584 78523684 -110755870 - HERV16 LTR ERVL -1442 3554 3457 185 0 40 0 chr6 78523698 78523723 -110755831 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 810 252 0 0 chr6 78523723 78523874 -110755680 - FAM SINE Alu -27 158 8 2327 326 35 58 chr6 78524066 78525401 -110754153 - HERV16 LTR ERVL -1907 3089 1899 1793 348 36 19 chr6 78525586 78526448 -110753106 - HERV16 LTR ERVL -3433 1563 687 270 410 31 15 chr6 78526632 78527090 -110752464 - HERV16 LTR ERVL -4499 497 33 1281 289 35 32 chr6 78527108 78527410 -110752144 - LTR16B LTR ERVL 0 464 159 1747 167 53 109 chr6 78527410 78527859 -110751695 - MSTC LTR MaLR 0 428 5 1281 289 35 32 chr6 78527859 78528019 -110751535 - LTR16B LTR ERVL -305 159 1 3944 20 0 0 chr6 78529147 78529603 -110749951 - L1PA2 LINE L1 0 6155 5700 25 0 0 0 chr6 78530085 78530110 -110749444 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr6 78530552 78530580 -110748974 + AT_rich Low_complexity Low_complexity 1 28 0 1652 208 17 22 chr6 78531018 78531378 -110748176 + MLT1A1 LTR MaLR 4 361 -4 193 328 33 0 chr6 78531407 78531468 -110748086 + MIR SINE MIR 36 98 -164 31 26 0 0 chr6 78531515 78531553 -110748001 + AT_rich Low_complexity Low_complexity 1 38 0 832 29 0 0 chr6 78531669 78531771 -110747783 + L1PA2 LINE L1 6052 6153 -2 1471 221 168 18 chr6 78532412 78532859 -110746695 + MER67D LTR ERV1 1 514 0 247 185 37 62 chr6 78533524 78533605 -110745949 - L1ME4a LINE L1 -1 6120 6042 254 366 99 6 chr6 78533615 78533776 -110745778 - L2 LINE L2 -3 3310 3135 2198 243 111 83 chr6 78534023 78535474 -110744080 + L1MC/D LINE L1 461 2030 -4534 1184 270 76 25 chr6 78535463 78536159 -110743395 + L1MC/D LINE L1 2305 2992 -3572 * 2383 232 71 29 chr6 78536223 78536399 -110743155 + L1MC/D LINE L1 4822 4989 -1990 1891 153 24 34 chr6 78536399 78536778 -110742776 + THE1C LTR MaLR 1 375 0 2383 232 71 29 chr6 78536778 78537479 -110742075 + L1MC/D LINE L1 4989 5772 -1207 1325 187 16 60 chr6 78537479 78537795 -110741759 + AluJo SINE Alu 1 302 0 2383 232 71 29 chr6 78537795 78538281 -110741273 + L1MC/D LINE L1 5772 6236 -743 1783 128 73 0 chr6 78538395 78538669 -110740885 + AluSx SINE Alu 1 294 -18 807 299 75 52 chr6 78538868 78539252 -110740302 + LTR16A LTR ERVL 53 445 -5 757 290 45 0 chr6 78539414 78539638 -110739916 + HERV16 LTR ERVL 192 425 -4571 850 300 76 38 chr6 78540041 78540464 -110739090 + HERV16 LTR ERVL 933 1371 -3625 215 56 0 113 chr6 78540502 78540573 -110738981 + (CAAAAA)n Simple_repeat Simple_repeat 4 66 0 1358 312 32 12 chr6 78540711 78541208 -110738346 + HERV16 LTR ERVL 1642 2148 -2848 1710 313 96 61 chr6 78541273 78541842 -110737712 + HERV16 LTR ERVL 2265 2813 -2183 1708 237 10 10 chr6 78541842 78542238 -110737316 + MSTD LTR MaLR 1 396 0 1710 313 96 61 chr6 78542238 78542925 -110736629 + HERV16 LTR ERVL 2813 3565 -1431 690 340 54 38 chr6 78543045 78543677 -110735877 + HERV16 LTR ERVL 4703 5344 -310 335 269 246 0 chr6 78543827 78543961 -110735593 - MER96 DNA MER1_type -4 171 5 1160 308 27 15 chr6 78543966 78544372 -110735182 + LTR16A LTR ERVL 26 436 -14 195 235 0 0 chr6 78544557 78544608 -110734946 + C-rich Low_complexity Low_complexity 16 66 0 652 221 38 24 chr6 78594866 78595082 -110684472 - MLT1B LTR MaLR -92 375 103 675 290 183 10 chr6 78595297 78595697 -110683857 + L1ME4a LINE L1 5290 5758 -2050 191 318 167 35 chr6 78596214 78596412 -110683142 - L2 LINE L2 -1400 1914 1691 2150 128 0 0 chr6 78596430 78596736 -110682818 + AluSx SINE Alu 1 306 -6 999 198 77 3 chr6 78597645 78597891 -110681663 + L1MA6 LINE L1 6036 6292 -8 22 0 0 0 chr6 78597893 78597915 -110681639 + AT_rich Low_complexity Low_complexity 1 22 0 353 375 16 0 chr6 78598010 78598138 -110681416 + MIR SINE MIR 7 136 -126 1036 201 4 28 chr6 78598297 78598546 -110681008 + L1MD3 LINE L1 7721 7963 -32 239 274 26 17 chr6 78598579 78598696 -110680858 + L1ME4a LINE L1 5831 5948 -173 21 0 0 0 chr6 78598806 78598827 -110680727 + AT_rich Low_complexity Low_complexity 1 21 0 266 211 0 64 chr6 78601125 78601281 -110678273 + (TTTA)n Simple_repeat Simple_repeat 4 149 0 684 210 14 0 chr6 78601308 78601446 -110678108 - AluJo SINE Alu -19 293 154 581 178 0 0 chr6 78601446 78601547 -110678007 - AluJo SINE Alu -205 107 7 21 36 0 0 chr6 78601717 78601745 -110677809 + AT_rich Low_complexity Low_complexity 1 28 0 4256 148 54 28 chr6 78602503 78603457 -110676097 + MER11C LTR ERVK 1 1071 0 210 338 88 44 chr6 78603476 78603636 -110675918 - L2 LINE L2 -996 2318 2152 1339 140 4 8 chr6 78603817 78604052 -110675502 + L1MA8 LINE L1 6055 6288 -3 319 389 40 0 chr6 78604466 78604641 -110674913 + MIR SINE MIR 8 189 -73 32 26 0 0 chr6 78604774 78604813 -110674741 + AT_rich Low_complexity Low_complexity 1 39 0 677 198 0 0 chr6 78606027 78606148 -110673406 - AluJ SINE Alu -8 304 184 572 172 10 10 chr6 78606170 78606269 -110673285 - AluJ SINE Alu -191 121 23 446 351 49 36 chr6 78606271 78606656 -110672898 + LTR40a LTR ERVL 88 477 -42 533 304 78 25 chr6 78606714 78607112 -110672442 + L1ME LINE L1 4394 4812 -1334 425 361 18 6 chr6 78607462 78607746 -110671808 + L1ME LINE L1 5434 5722 -448 228 265 0 0 chr6 78608269 78608367 -110671187 + (TA)n Simple_repeat Simple_repeat 2 99 0 2301 78 0 19 chr6 78608564 78608873 -110670681 + AluSg SINE Alu 1 303 -7 1232 100 0 0 chr6 78608873 78609043 -110670511 + AluY SINE Alu 133 302 -9 299 210 0 12 chr6 78609562 78609643 -110669911 + (TA)n Simple_repeat Simple_repeat 1 80 0 23 0 0 0 chr6 78609660 78609683 -110669871 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr6 78609703 78609724 -110669830 + (TG)n Simple_repeat Simple_repeat 2 22 0 424 273 68 24 chr6 78613269 78613518 -110666036 + L1ME LINE L1 1213 1472 -4951 258 262 24 0 chr6 78613545 78613629 -110665925 + L1ME LINE L1 1669 1754 -5187 302 303 178 0 chr6 78613640 78613792 -110665762 + L1ME LINE L1 1807 1985 -4956 661 146 0 0 chr6 78613806 78613916 -110665638 + FLAM_A SINE Alu 33 142 0 581 313 133 23 chr6 78613946 78615032 -110664522 + L1ME LINE L1 2039 3244 -3878 789 303 55 50 chr6 78615052 78615531 -110664023 + L1ME LINE L1 3771 4257 -2684 6395 152 32 29 chr6 78615531 78616066 -110663488 + Tigger3b DNA MER2_type 1 533 -2495 1262 157 109 61 chr6 78616066 78616359 -110663195 - AluJb SINE Alu -5 307 1 6395 152 32 29 chr6 78616359 78617051 -110662503 + Tigger3b DNA MER2_type 533 1231 0 789 303 55 50 chr6 78617051 78617392 -110662162 + L1ME LINE L1 4257 4595 -2346 640 219 43 111 chr6 78617394 78617722 -110661832 + L1ME LINE L1 5934 6241 -718 23 33 0 0 chr6 78617944 78617974 -110661580 + GC_rich Low_complexity Low_complexity 1 30 0 513 258 90 110 chr6 78618152 78618552 -110661002 - L2 LINE L2 -1215 2099 1708 28 48 0 0 chr6 78618556 78618598 -110660956 + AT_rich Low_complexity Low_complexity 1 42 0 230 89 78 67 chr6 78619301 78619391 -110660163 + (TTAA)n Simple_repeat Simple_repeat 4 94 0 1141 147 0 46 chr6 78619398 78619595 -110659959 - AluSx SINE Alu -124 188 1 521 238 53 13 chr6 78622280 78622431 -110657123 + MER106B DNA MER1_type 903 1059 0 482 252 86 26 chr6 78622451 78622699 -110656855 + LTR1 LTR ERV1 33 415 -286 234 230 14 14 chr6 78622706 78622780 -110656774 + (TA)n Simple_repeat Simple_repeat 1 74 0 181 367 142 8 chr6 78623222 78623342 -110656212 - L2 LINE L2 -221 3051 2916 225 219 62 0 chr6 78624507 78624571 -110654983 + MIR SINE MIR 96 163 -99 25 31 0 0 chr6 78624634 78624666 -110654888 + AT_rich Low_complexity Low_complexity 1 32 0 4303 214 61 30 chr6 78625792 78626756 -110652798 - L1MC2 LINE L1 -9 6335 5283 2506 90 128 5 chr6 78626756 78627155 -110652399 - LTR7 LTR ERV1 -2 448 1 4303 214 61 30 chr6 78627155 78627988 -110651566 - L1MC2 LINE L1 -1061 5283 4477 202 292 31 42 chr6 78628405 78628501 -110651053 + MIR3 SINE MIR 114 208 0 2470 14 0 0 chr6 78630429 78630705 -110648849 + AluYa5 SINE Alu 1 276 -35 291 258 0 34 chr6 78631780 78631869 -110647685 + MIR SINE MIR 177 262 0 457 216 43 0 chr6 78632023 78632139 -110647415 - L1 LINE L1 -1314 4832 4712 * 2490 188 72 11 chr6 78632136 78632977 -110646577 + L1MB1 LINE L1 4989 5870 -298 9470 100 24 4 chr6 78632979 78635164 -110644390 - L1PA7 LINE L1 -1 6153 3932 1216 230 7 3 chr6 78635164 78635446 -110644108 + L1MB1 LINE L1 5883 6166 -2 331 166 12 27 chr6 78635485 78635584 -110643970 - L1M LINE L1 -877 5414 5318 281 352 40 16 chr6 78636030 78636155 -110643399 - LTR16C LTR ERVL -273 218 91 851 164 23 46 chr6 78636350 78636569 -110642985 - L1MA9 LINE L1 -10 6302 6089 633 205 34 39 chr6 78636705 78636910 -110642644 - L1MC/D LINE L1 -2336 5472 5269 1420 216 3 7 chr6 78636921 78637213 -110642341 + AluJb SINE Alu 13 303 -9 1020 327 110 19 chr6 78637655 78638362 -110641192 + L2 LINE L2 2544 3308 -5 323 355 75 23 chr6 78638370 78638635 -110640919 + L2 LINE L2 2636 2914 -400 712 202 0 0 chr6 78638669 78638798 -110640756 + MER94 DNA DNA 1 129 -5 275 298 77 39 chr6 78638815 78638919 -110640635 + L2 LINE L2 2950 3057 -215 210 347 20 0 chr6 78639112 78639210 -110640344 + MIR SINE MIR 17 116 -146 23 0 0 0 chr6 78639348 78639371 -110640183 + AT_rich Low_complexity Low_complexity 1 23 0 249 83 0 0 chr6 78639958 78639994 -110639560 + (CA)n Simple_repeat Simple_repeat 1 36 0 214 210 6 216 chr6 78640049 78640225 -110639329 - MIR SINE MIR 0 262 124 2336 58 0 29 chr6 78641665 78641973 -110637581 + AluY SINE Alu 2 300 -11 2073 126 7 0 chr6 78642041 78642343 -110637211 + AluSx SINE Alu 1 304 -8 30 77 0 0 chr6 78644101 78644166 -110635388 + AT_rich Low_complexity Low_complexity 1 65 0 922 170 37 198 chr6 78644751 78645186 -110634368 + MLT1A1 LTR MaLR 1 365 0 403 296 63 39 chr6 78645198 78645539 -110634015 + L1ME LINE L1 5296 5648 -514 2459 33 10 0 chr6 78645832 78646132 -110633422 + AluY SINE Alu 1 303 -8 3039 161 9 7 chr6 78646138 78646686 -110632868 + L1PA16 LINE L1 5607 6155 -11 1265 162 123 0 chr6 78646709 78646944 -110632610 - LTR44 LTR ERV1 -134 385 122 987 97 0 52 chr6 78646947 78647101 -110632453 - AluSg/x SINE Alu -11 299 154 343 197 14 14 chr6 78647130 78647201 -110632353 - LTR44 LTR ERV1 -424 95 25 718 292 45 0 chr6 78647834 78648036 -110631518 + MER58A DNA MER1_type 10 220 -4 1699 163 49 41 chr6 78648046 78648415 -110631139 - THE1C LTR MaLR -3 372 1 1349 160 18 28 chr6 78648415 78648697 -110630857 - THE1C-int LTR MaLR 0 1580 1302 548 143 11 0 chr6 78648801 78648892 -110630662 - THE1C-int LTR MaLR -1041 539 448 250 149 21 0 chr6 78648890 78648937 -110630617 - THE1C-int LTR MaLR -1603 48 1 * 4862 90 18 4 chr6 78649172 78649882 -110629672 - LTR30 LTR ERV1 0 722 3 294 50 0 0 chr6 78649892 78649932 -110629622 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4681 212 53 21 chr6 78650671 78652284 -110627270 + L1MC1 LINE L1 4648 6315 -18 22 35 0 0 chr6 78652932 78652961 -110626593 + AT_rich Low_complexity Low_complexity 1 29 0 26 64 0 0 chr6 78653192 78653239 -110626315 + AT_rich Low_complexity Low_complexity 1 47 0 4004 201 21 27 chr6 78654447 78655481 -110624073 - L1MA7 LINE L1 -1335 4811 3829 1021 192 5 10 chr6 78655478 78655676 -110623878 + L1MA7 LINE L1 4811 5007 -1139 * 2711 137 8 0 chr6 78655678 78656371 -110623183 - L1PA14 LINE L1 -500 5661 4963 3132 131 4 0 chr6 78656371 78656868 -110622686 + L1PA14 LINE L1 5662 6161 0 4549 205 21 16 chr6 78656869 78657533 -110622021 + L1MA7 LINE L1 5002 5671 -620 2200 124 0 0 chr6 78657533 78657832 -110621722 + AluSx SINE Alu 3 301 -11 4549 205 21 16 chr6 78657832 78658446 -110621108 + L1MA7 LINE L1 5671 6280 -11 4486 212 12 10 chr6 78659166 78660123 -110619431 - L1MC2 LINE L1 -11 6333 5375 250 183 17 17 chr6 78660162 78660222 -110619332 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 509 107 29 29 chr6 78660225 78660365 -110619189 + (TAGA)n Simple_repeat Simple_repeat 4 143 0 577 271 56 32 chr6 78660365 78660705 -110618849 - L1MC2 LINE L1 -783 5363 5016 594 282 25 0 chr6 78660949 78661151 -110618403 - L1MC2 LINE L1 -1121 5025 4819 24 32 0 0 chr6 78661995 78662026 -110617528 + AT_rich Low_complexity Low_complexity 1 31 0 24 100 0 0 chr6 78664343 78664423 -110615131 + AT_rich Low_complexity Low_complexity 1 80 0 303 49 0 0 chr6 78664905 78664946 -110614608 + (CA)n Simple_repeat Simple_repeat 2 42 0 6797 85 4 1 chr6 78665228 78666487 -110613067 - L1PA7 LINE L1 -487 5685 4423 3608 75 2 0 chr6 78666487 78666953 -110612601 + L1PA7 LINE L1 5686 6154 0 655 284 65 10 chr6 78667118 78667319 -110612235 + MIR SINE MIR 2 213 -49 186 340 20 0 chr6 78667339 78667389 -110612165 + L2 LINE L2 3245 3295 -18 23 0 0 0 chr6 78667893 78667916 -110611638 + AT_rich Low_complexity Low_complexity 1 23 0 275 357 83 19 chr6 78668216 78668373 -110611181 - LTR67 LTR ERVL -297 260 94 25 31 0 0 chr6 78669145 78669177 -110610377 + AT_rich Low_complexity Low_complexity 1 32 0 443 173 0 73 chr6 78669317 78669427 -110610127 - L1PA8 LINE L1 -2 6170 6069 360 71 0 0 chr6 78669445 78669501 -110610053 + L1MA3 LINE L1 6250 6305 0 22 0 0 0 chr6 78669668 78669690 -110609864 + AT_rich Low_complexity Low_complexity 1 22 0 205 211 0 0 chr6 78669714 78669752 -110609802 + A-rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr6 78670150 78670179 -110609375 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 78670244 78670265 -110609289 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 78671065 78671090 -110608464 + AT_rich Low_complexity Low_complexity 1 25 0 278 275 148 6 chr6 78671521 78671703 -110607851 + L1ME2 LINE L1 4390 4597 -1549 275 268 20 92 chr6 78671890 78672068 -110607486 + L1ME2 LINE L1 4729 4885 -1261 1859 62 147 0 chr6 78672068 78672326 -110607228 + AluY SINE Alu 1 296 -15 275 268 20 92 chr6 78672326 78672397 -110607157 + L1ME2 LINE L1 4885 4960 -1186 1046 196 63 81 chr6 78672673 78673055 -110606499 + L1ME2 LINE L1 5781 6155 -9 1739 182 16 3 chr6 78673392 78673700 -110605854 + AluJb SINE Alu 1 312 0 256 286 0 0 chr6 78674138 78674201 -110605353 + CT-rich Low_complexity Low_complexity 4 66 0 306 193 132 61 chr6 78674362 78674476 -110605078 - HAL1 LINE L1 -1570 937 816 2148 117 0 0 chr6 78674637 78674944 -110604610 + AluSg SINE Alu 1 307 -3 319 314 44 25 chr6 78675568 78675727 -110603827 + MIR SINE MIR 91 252 -10 195 296 0 0 chr6 78676457 78676501 -110603053 - MIR3 SINE MIR -11 197 154 482 319 40 47 chr6 78677154 78677452 -110602102 + MLT1I LTR MaLR 64 359 -50 28 61 0 0 chr6 78678061 78678110 -110601444 + AT_rich Low_complexity Low_complexity 1 49 0 464 235 0 10 chr6 78678518 78678616 -110600938 - L2 LINE L2 -1 3312 3216 7056 160 25 17 chr6 78679130 78680224 -110599330 + HSMAR2 DNA Mariner 2 1109 -193 450 55 11 132 chr6 78680224 78680262 -110599292 + MADE1 DNA Mariner 1 23 -57 2027 104 7 13 chr6 78680262 78680560 -110598994 - AluSx SINE Alu -16 296 1 450 55 11 132 chr6 78680560 78680612 -110598942 + MADE1 DNA Mariner 23 80 0 7056 160 25 17 chr6 78680612 78680808 -110598746 + HSMAR2 DNA Mariner 1109 1302 0 272 284 0 0 chr6 78680846 78680913 -110598641 + GA-rich Low_complexity Low_complexity 2 68 0 1990 138 6 6 chr6 78680992 78681304 -110598250 - AluSx SINE Alu 0 312 1 186 43 0 0 chr6 78681309 78681332 -110598222 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1600 195 53 3 chr6 78682504 78682827 -110596727 + MER44D DNA MER2_type 1 609 0 369 0 0 0 chr6 78683086 78683127 -110596427 + (CA)n Simple_repeat Simple_repeat 2 42 0 304 364 54 8 chr6 78684877 78685006 -110594548 - MIR3 SINE MIR -7 201 67 24 32 0 0 chr6 78685433 78685464 -110594090 + AT_rich Low_complexity Low_complexity 1 31 0 878 196 0 73 chr6 78685502 78685557 -110593997 - MER3 DNA MER1_type -10 199 142 1985 144 3 0 chr6 78685557 78685855 -110593699 + AluSx SINE Alu 1 299 -13 878 196 0 73 chr6 78685855 78686003 -110593551 - MER3 DNA MER1_type -67 142 11 215 286 119 0 chr6 78686019 78686103 -110593451 - MIR SINE MIR -110 152 59 758 239 27 40 chr6 78688846 78689068 -110590486 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr6 78689077 78689105 -110590449 + AT_rich Low_complexity Low_complexity 1 28 0 294 269 11 11 chr6 78689177 78689270 -110590284 + (CATATA)n Simple_repeat Simple_repeat 4 96 0 2272 99 3 0 chr6 78689942 78690245 -110589309 + AluSx SINE Alu 2 305 -7 25 31 0 0 chr6 78690666 78690698 -110588856 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr6 78690923 78690949 -110588605 + AT_rich Low_complexity Low_complexity 1 26 0 2566 52 0 0 chr6 78691326 78691635 -110587919 + AluY SINE Alu 1 309 -2 27 62 0 0 chr6 78691844 78691892 -110587662 + AT_rich Low_complexity Low_complexity 1 48 0 367 313 86 70 chr6 78691913 78692078 -110587476 + L1 LINE L1 2869 3030 -3116 2217 90 10 13 chr6 78692078 78692377 -110587177 + AluSc SINE Alu 1 298 -11 367 313 86 70 chr6 78692377 78692662 -110586892 + L1 LINE L1 3030 3330 -2816 2154 114 0 7 chr6 78692662 78692960 -110586594 + AluSp SINE Alu 1 296 -17 367 313 86 70 chr6 78692960 78693010 -110586544 + L1 LINE L1 3330 3378 -2768 300 352 83 10 chr6 78693111 78693304 -110586250 + L1 LINE L1 3578 3784 -2362 1975 113 0 38 chr6 78693413 78693740 -110585814 + AluSx SINE Alu 3 318 0 2514 115 0 8 chr6 78694238 78694603 -110584951 - THE1B LTR MaLR 0 364 3 9316 129 10 73 chr6 78694605 78696288 -110583266 - THE1B-int LTR MaLR 0 1580 4 2550 112 0 8 chr6 78696291 78696658 -110582896 - THE1B LTR MaLR 0 364 1 423 315 9 0 chr6 78696688 78696796 -110582758 + MER58A DNA MER1_type 1 109 0 267 318 82 9 chr6 78696827 78696937 -110582617 - MIR3 SINE MIR -18 190 73 26 64 0 0 chr6 78697831 78697878 -110581676 + AT_rich Low_complexity Low_complexity 1 47 0 319 315 15 15 chr6 78698469 78698599 -110580955 - MER94 DNA DNA -4 130 1 204 231 45 8 chr6 78699489 78699623 -110579931 + (TA)n Simple_repeat Simple_repeat 1 139 0 5710 146 23 2 chr6 78699673 78700597 -110578957 - L1PA12 LINE L1 -4975 2606 1664 1493 373 27 26 chr6 78700607 78701414 -110578140 - L1M4c LINE L1 -4646 2000 1193 614 299 45 101 chr6 78701417 78701952 -110577602 - L1M4c LINE L1 -5534 1008 504 2138 107 7 10 chr6 78702282 78702592 -110576962 - AluY SINE Alu 0 311 3 252 304 40 7 chr6 78702613 78702761 -110576793 - L1M4c LINE L1 -6376 166 14 21 57 0 0 chr6 78703040 78703075 -110576479 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 78703204 78703225 -110576329 + AT_rich Low_complexity Low_complexity 1 21 0 11715 196 17 4 chr6 78703243 78705846 -110573708 - L1MA2 LINE L1 0 7723 5155 195 42 0 0 chr6 78705846 78705870 -110573684 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 11715 196 17 4 chr6 78705870 78706657 -110572897 - L1MA2 LINE L1 -2568 5155 4280 2348 82 0 19 chr6 78706657 78706973 -110572581 - AluY SINE Alu -1 310 1 11715 196 17 4 chr6 78706973 78707203 -110572351 - L1MA2 LINE L1 -3443 4280 4054 2014 209 36 81 chr6 78707203 78707783 -110571771 - MLT2B3 LTR ERVL 0 554 1 33710 163 14 10 chr6 78707783 78713410 -110566144 - HERVL-B3 LTR ERVL 0 5654 1 1563 260 25 83 chr6 78713410 78713470 -110566084 - MLT2B3 LTR ERVL 0 554 492 2746 176 31 48 chr6 78713470 78714091 -110565463 + LTR9 LTR ERV1 3 612 0 1563 260 25 83 chr6 78714091 78714618 -110564936 - MLT2B3 LTR ERVL -62 492 1 645 198 107 5 chr6 78714618 78714805 -110564749 - L1MA2 LINE L1 -3507 4058 3853 2150 169 19 61 chr6 78714806 78715286 -110564268 + LTR3 LTR ERVK 1 429 -3 17507 172 22 23 chr6 78715325 78716289 -110563265 - L1MA2 LINE L1 -3708 3857 2894 2343 88 0 0 chr6 78716289 78716595 -110562959 + AluY SINE Alu 1 306 -5 17507 172 22 23 chr6 78716595 78719367 -110560187 - L1MA2 LINE L1 -4671 2894 95 276 30 0 0 chr6 78719367 78719400 -110560154 + (TG)n Simple_repeat Simple_repeat 2 34 0 17507 172 22 23 chr6 78719400 78719421 -110560133 - L1MA2 LINE L1 -7470 95 75 4808 141 51 4 chr6 78719406 78720253 -110559301 - L1PA13 LINE L1 -2 7580 17 * 675 294 37 0 chr6 78720786 78720973 -110558581 + MIR SINE MIR 18 211 -51 23 54 0 0 chr6 78720987 78721024 -110558530 + AT_rich Low_complexity Low_complexity 1 37 0 212 83 0 28 chr6 78721031 78721067 -110558487 + (CAT)n Simple_repeat Simple_repeat 2 36 0 263 71 24 0 chr6 78721637 78721679 -110557875 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr6 78722302 78722324 -110557230 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 78722587 78722609 -110556945 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr6 78722637 78722673 -110556881 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr6 78723814 78723851 -110555703 + AT_rich Low_complexity Low_complexity 1 37 0 1598 244 108 53 chr6 78724281 78725380 -110554174 + L1MCb LINE L1 570 1607 -4957 2232 100 0 28 chr6 78725380 78725700 -110553854 + AluY SINE Alu 1 311 0 1598 244 108 53 chr6 78725700 78725768 -110553786 + L1MCb LINE L1 1607 1670 -4894 1565 194 137 58 chr6 78725768 78726066 -110553488 - MLT1D LTR MaLR 0 505 155 1850 133 8 0 chr6 78726066 78726329 -110553225 + AluSq SINE Alu 37 301 -12 1565 194 137 58 chr6 78726329 78726498 -110553056 - MLT1D LTR MaLR -350 155 1 1598 244 108 53 chr6 78726498 78726570 -110552984 + L1MCb LINE L1 1670 1976 -4588 1901 261 14 47 chr6 78726570 78726682 -110552872 + MER70B LTR ERVL 2 116 -462 4634 77 2 14 chr6 78726682 78727158 -110552396 - L1PA7 LINE L1 0 6154 5686 2119 115 7 10 chr6 78727158 78727462 -110552092 - AluSp SINE Alu -10 303 1 4634 77 2 14 chr6 78727462 78727622 -110551932 - L1PA7 LINE L1 -468 5686 5526 1901 261 14 47 chr6 78727622 78728000 -110551554 + MER70B LTR ERVL 116 476 -102 226 94 0 0 chr6 78727998 78728030 -110551524 + MER70A LTR ERVL 441 472 0 * 480 273 116 31 chr6 78728030 78728645 -110550909 + L1MCb LINE L1 1979 2861 -3703 27 29 0 0 chr6 78729410 78729444 -110550110 + AT_rich Low_complexity Low_complexity 1 34 0 689 65 0 0 chr6 78729444 78729536 -110550018 - L1MA1 LINE L1 -3 6299 6208 1170 282 100 33 chr6 78729760 78730310 -110549244 + MLT1E LTR MaLR 7 593 0 1662 201 34 11 chr6 78730355 78730713 -110548841 + MER47A DNA MER2_type 1 366 0 23 33 0 0 chr6 78731225 78731255 -110548299 + AT_rich Low_complexity Low_complexity 1 30 0 1529 139 18 115 chr6 78731265 78731604 -110547950 + AluSx SINE Alu 4 309 -3 1912 156 85 15 chr6 78733218 78733558 -110545996 + THE1B LTR MaLR 1 364 0 11263 103 6 0 chr6 78733560 78735126 -110544428 + THE1B-int LTR MaLR 3 1578 -2 1892 158 76 9 chr6 78735128 78735469 -110544085 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr6 78735668 78735692 -110543862 + AT_rich Low_complexity Low_complexity 1 24 0 189 121 0 0 chr6 78735692 78735725 -110543829 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr6 78736303 78736324 -110543230 + AT_rich Low_complexity Low_complexity 1 21 0 1213 47 0 0 chr6 78736324 78736474 -110543080 - L1PA7 LINE L1 0 6154 6005 23 54 0 0 chr6 78736865 78736902 -110542652 + AT_rich Low_complexity Low_complexity 1 37 0 2256 78 0 16 chr6 78737344 78737651 -110541903 - AluY SINE Alu -9 302 1 21 0 0 0 chr6 78738584 78738605 -110540949 + AT_rich Low_complexity Low_complexity 1 21 0 206 62 31 0 chr6 78741175 78741207 -110538347 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 32 0 0 0 chr6 78741207 78741239 -110538315 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr6 78742496 78742525 -110537029 + AT_rich Low_complexity Low_complexity 1 29 0 1736 167 0 19 chr6 78743055 78743379 -110536175 - L1PA16 LINE L1 -6 6160 5843 261 57 0 0 chr6 78744604 78744639 -110534915 + (CAA)n Simple_repeat Simple_repeat 3 37 0 206 286 0 29 chr6 78744737 78744807 -110534747 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 21 0 0 0 chr6 78746192 78746213 -110533341 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 78746301 78746323 -110533231 + AT_rich Low_complexity Low_complexity 1 22 0 2454 161 7 25 chr6 78746348 78746784 -110532770 + MSTA LTR MaLR 1 428 0 204 40 0 0 chr6 78746824 78746849 -110532705 + (A)n Simple_repeat Simple_repeat 1 25 0 3928 137 23 24 chr6 78746913 78747622 -110531932 + L1PA16 LINE L1 5450 6157 -9 285 29 0 0 chr6 78748846 78748880 -110530674 + (TC)n Simple_repeat Simple_repeat 1 34 0 1605 195 3 17 chr6 78749149 78749447 -110530107 + AluJo SINE Alu 4 297 -15 7380 28 3 0 chr6 78749627 78750515 -110529039 - L1PA3 LINE L1 0 6155 5263 380 257 20 0 chr6 78750738 78750839 -110528715 - MLT1I LTR MaLR -13 396 294 424 269 66 46 chr6 78750878 78751075 -110528479 - MLT1I LTR MaLR -208 201 1 1524 194 34 7 chr6 78751163 78751457 -110528097 + MER1B DNA MER1_type 38 339 0 906 208 145 24 chr6 78751504 78751835 -110527719 + Charlie1b DNA MER1_type 2 386 -137 695 335 18 5 chr6 78751837 78752055 -110527499 + LTR16A LTR ERVL 220 440 -10 789 341 77 3 chr6 78752064 78752413 -110527141 + HERV16 LTR ERVL 1 375 -4621 654 349 61 16 chr6 78752640 78752953 -110526601 + HERV16 LTR ERVL 2443 2806 -2306 1143 201 41 108 chr6 78752956 78753082 -110526472 + L1ME2 LINE L1 5112 5245 -921 216 0 0 0 chr6 78753082 78753106 -110526448 + (CA)n Simple_repeat Simple_repeat 1 24 0 1143 201 41 108 chr6 78753106 78753494 -110526060 + L1ME2 LINE L1 5245 5586 -580 1910 189 60 29 chr6 78753494 78753943 -110525611 - LTR2B LTR ERV1 0 490 28 1854 208 39 90 chr6 78753989 78754638 -110524916 - LTR6A LTR ERV1 0 564 1 1246 249 59 49 chr6 78754751 78755241 -110524313 + L1ME2 LINE L1 5661 6155 -9 487 254 101 48 chr6 78755468 78755677 -110523877 - MIR SINE MIR -12 250 31 276 273 51 91 chr6 78756332 78756508 -110523046 + MIR SINE MIR 43 211 -51 1581 146 8 23 chr6 78757287 78757548 -110522006 - LTR51 LTR ERV1 -412 259 3 1835 176 11 34 chr6 78757598 78757951 -110521603 - Tigger2a DNA MER2_type -87 347 3 297 109 0 0 chr6 78758897 78758952 -110520602 + (CA)n Simple_repeat Simple_repeat 2 56 0 385 347 89 51 chr6 78759905 78760645 -110518909 - L2 LINE L2 -1396 1918 1151 297 231 103 43 chr6 78760748 78760865 -110518689 + MER94 DNA DNA 3 126 -8 191 335 143 28 chr6 78761215 78761397 -110518157 - L2 LINE L2 -2651 663 461 729 292 64 0 chr6 78763433 78763604 -110515950 + MER5A DNA MER1_type 2 183 -6 25 51 0 0 chr6 78763852 78763891 -110515663 + AT_rich Low_complexity Low_complexity 1 39 0 1396 226 7 7 chr6 78764317 78764605 -110514949 - AluJo SINE Alu -24 288 1 300 284 0 0 chr6 78764616 78764683 -110514871 - L2 LINE L2 -1 3271 3205 1271 229 72 7 chr6 78764782 78765075 -110514479 + AluJo SINE Alu 1 312 0 21 82 0 0 chr6 78765361 78765410 -110514144 + AT_rich Low_complexity Low_complexity 1 49 0 448 344 32 16 chr6 78765909 78766156 -110513398 + MIR SINE MIR 2 252 -10 924 303 139 29 chr6 78766271 78766760 -110512794 + MLT1E LTR MaLR 1 543 -50 486 137 250 24 chr6 78766777 78766901 -110512653 - MER4C LTR ERV1 -18 447 296 1282 187 47 47 chr6 78767050 78767392 -110512162 - MER4A LTR ERV1 -322 342 1 248 232 0 0 chr6 78767393 78767449 -110512105 + MLT1E LTR MaLR 512 567 0 900 327 32 17 chr6 78767582 78767986 -110511568 + L1PA16 LINE L1 6 415 -7166 1591 26 5 0 chr6 78768769 78768962 -110510592 - L1PA4 LINE L1 -1035 5111 4918 7042 34 35 0 chr6 78768963 78769982 -110509572 + L1PA4 LINE L1 5098 6146 -9 11179 227 59 17 chr6 78770060 78775148 -110504406 + L1PA16 LINE L1 2231 7594 -10 270 143 0 0 chr6 78775148 78775197 -110504357 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 40 59 0 0 chr6 78775418 78775486 -110504068 + AT_rich Low_complexity Low_complexity 1 68 0 345 174 0 0 chr6 78776815 78776884 -110502670 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 225 0 0 0 chr6 78777372 78777397 -110502157 + (TA)n Simple_repeat Simple_repeat 2 26 0 207 146 0 0 chr6 78777548 78777589 -110501965 + (TA)n Simple_repeat Simple_repeat 1 41 0 11505 137 11 40 chr6 78778574 78781443 -110498111 + L1P3 LINE L1 8 2854 -3607 7443 38 0 0 chr6 78781443 78782588 -110496966 + L1PA4 LINE L1 5003 6147 -8 1038 138 152 32 chr6 78782595 78782812 -110496742 + MSTA LTR MaLR 186 428 0 1671 207 0 6 chr6 78783301 78783615 -110495939 - AluJb SINE Alu 0 312 1 285 278 22 22 chr6 78783983 78784073 -110495481 + L2 LINE L2 717 806 -2508 489 194 20 0 chr6 78784140 78784238 -110495316 + MER58 DNA MER1_type 2318 2417 -3 316 410 16 5 chr6 78784238 78784428 -110495126 + L2 LINE L2 800 991 -2323 413 292 172 5 chr6 78784696 78784905 -110494649 - MIR SINE MIR -13 249 6 9247 100 16 4 chr6 78786253 78786926 -110492628 - L1PA7 LINE L1 0 6154 5490 2432 11 0 4 chr6 78786926 78787197 -110492357 - AluYa5 SINE Alu -15 296 27 9247 100 16 4 chr6 78787197 78788691 -110490863 - L1PA7 LINE L1 -664 5490 3974 15704 143 18 109 chr6 78788691 78791528 -110488026 - L1PA7 LINE L1 -2795 3351 922 2137 119 3 0 chr6 78791528 78791850 -110487704 - AluSq SINE Alu 0 323 1 15704 143 18 109 chr6 78791850 78792685 -110486869 - L1PA7 LINE L1 -5224 922 12 612 263 110 24 chr6 78792720 78792929 -110486625 - MIR SINE MIR -4 258 32 24 85 0 0 chr6 78793458 78793517 -110486037 + AT_rich Low_complexity Low_complexity 1 59 0 2056 145 39 31 chr6 78793548 78793906 -110485648 - THE1B LTR MaLR -3 361 1 197 86 57 0 chr6 78795196 78795231 -110484323 + (TATG)n Simple_repeat Simple_repeat 2 38 0 229 26 53 0 chr6 78795239 78795277 -110484277 + (TA)n Simple_repeat Simple_repeat 1 40 0 250 26 51 0 chr6 78795609 78795648 -110483906 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 210 217 11 22 chr6 78795794 78795886 -110483668 + GA-rich Low_complexity Low_complexity 2 92 0 374 324 123 31 chr6 78796083 78796376 -110483178 - LTR16A LTR ERVL -123 327 8 21 36 0 0 chr6 78796664 78796692 -110482862 + AT_rich Low_complexity Low_complexity 1 28 0 1226 203 109 35 chr6 78797020 78797487 -110482067 - MER39 LTR ERV1 -1 706 5 288 377 73 39 chr6 78797662 78798044 -110481510 - L2 LINE L2 -23 3290 2896 259 189 0 0 chr6 78798048 78798101 -110481453 - Charlie5 DNA MER1_type -34 2578 2526 337 275 116 88 chr6 78798206 78798304 -110481250 - L2 LINE L2 -773 2541 2447 207 0 0 0 chr6 78798304 78798327 -110481227 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 337 275 116 88 chr6 78798327 78798624 -110480930 - L2 LINE L2 -867 2447 2135 411 289 50 28 chr6 78798683 78798863 -110480691 - L2 LINE L2 -1425 1889 1706 251 354 37 31 chr6 78799280 78799441 -110480113 + Tigger8 DNA MER2_type 3 164 -502 328 283 80 43 chr6 78799771 78799909 -110479645 - MIR SINE MIR -103 159 17 265 293 20 50 chr6 78800751 78800850 -110478704 - L2 LINE L2 0 3272 3177 25 31 0 0 chr6 78801395 78801427 -110478127 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 78801596 78801618 -110477936 + AT_rich Low_complexity Low_complexity 1 22 0 236 340 57 0 chr6 78803286 78803392 -110476162 - MIR SINE MIR -48 214 103 253 333 0 11 chr6 78803492 78803582 -110475972 + A-rich Low_complexity Low_complexity 4 92 0 22 0 0 0 chr6 78804544 78804566 -110474988 + AT_rich Low_complexity Low_complexity 1 22 0 509 343 101 33 chr6 78806624 78806840 -110472714 + MLT1K LTR MaLR 99 299 -289 846 42 66 6 chr6 78806840 78807006 -110472548 + (TA)n Simple_repeat Simple_repeat 1 176 0 509 343 101 33 chr6 78807006 78807244 -110472310 + MLT1K LTR MaLR 299 584 -4 219 139 0 0 chr6 78807474 78807510 -110472044 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 657 224 23 6 chr6 78807825 78807999 -110471555 + MER96B DNA MER1_type? 1 177 -240 3667 36 2 0 chr6 78809401 78809844 -110469710 + L1PA3 LINE L1 5709 6152 -3 379 348 147 0 chr6 78809951 78810155 -110469399 - MIR SINE MIR -10 252 19 353 278 32 24 chr6 78811561 78811687 -110467867 - MIR SINE MIR -87 175 49 232 296 56 14 chr6 78813837 78813979 -110465575 - L1MDa LINE L1 -4538 2002 1855 21 36 0 0 chr6 78814047 78814075 -110465479 + AT_rich Low_complexity Low_complexity 1 28 0 377 383 88 34 chr6 78814135 78814678 -110464876 + L2 LINE L2 2687 3264 -8 27 29 0 0 chr6 78815034 78815068 -110464486 + AT_rich Low_complexity Low_complexity 1 34 0 209 291 81 12 chr6 78815389 78815475 -110464079 - L2 LINE L2 0 3313 3222 413 242 113 113 chr6 78815641 78815872 -110463682 + MLT1G3 LTR MaLR 151 456 -139 234 0 0 0 chr6 78816196 78816222 -110463332 + (TA)n Simple_repeat Simple_repeat 1 26 0 2390 62 0 55 chr6 78816335 78816660 -110462894 + AluY SINE Alu 1 307 -4 243 238 0 62 chr6 78817995 78818075 -110461479 - MLT1K LTR MaLR -17 571 497 315 0 0 0 chr6 78818438 78818473 -110461081 + (CA)n Simple_repeat Simple_repeat 2 36 0 1040 226 24 24 chr6 78818697 78818945 -110460609 + MIR SINE MIR 12 259 -3 687 230 79 0 chr6 78819937 78820115 -110459439 - LTR33A LTR ERVL -4 519 328 350 241 102 9 chr6 78820137 78820245 -110459309 - LTR33A LTR ERVL -405 118 1 297 325 40 16 chr6 78820297 78820423 -110459131 + MER5A DNA MER1_type 15 143 -46 192 214 29 86 chr6 78822637 78822707 -110456847 + L2 LINE L2 3205 3270 -2 405 256 201 9 chr6 78822917 78823136 -110456418 - L1MC/D LINE L1 -2208 5600 5340 1013 160 11 5 chr6 78823370 78823558 -110455996 - L1PB2 LINE L1 0 6867 6679 1553 141 8 0 chr6 78823558 78823807 -110455747 + L1P5 LINE L1 5412 5662 -489 4941 178 8 28 chr6 78823807 78825636 -110453918 - L1PB2 LINE L1 -186 6681 4898 * 15257 172 48 18 chr6 78825633 78829444 -110450110 - L1PB2 LINE L1 -2931 3931 6 1986 145 92 15 chr6 78829614 78829952 -110449602 + THE1B LTR MaLR 1 364 0 597 262 41 121 chr6 78830161 78830524 -110449030 - LTR16C LTR ERVL 0 491 158 1343 217 0 0 chr6 78830976 78831234 -110448320 + MLT2C1 LTR ERVL 1 258 -139 2237 200 69 34 chr6 78831265 78831846 -110447708 - MER7C DNA MER2_type -1 601 1 226 220 0 0 chr6 78831856 78831915 -110447639 + L1MC4 LINE L1 6637 6695 -1347 2359 105 33 25 chr6 78832194 78832555 -110446999 - THE1B LTR MaLR 0 364 1 10843 117 8 1 chr6 78832555 78834124 -110445430 - THE1B-int LTR MaLR 0 1580 1 468 165 30 20 chr6 78834124 78834222 -110445332 - THE1B LTR MaLR 0 355 281 1784 122 11 32 chr6 78834455 78834733 -110444821 - THE1B LTR MaLR -92 272 1 561 103 0 0 chr6 78834952 78835030 -110444524 + MADE1 DNA Mariner 1 78 -2 250 321 60 101 chr6 78835183 78835569 -110443985 - MLT1I LTR MaLR -6 403 34 252 266 0 89 chr6 78836740 78836819 -110442735 - L2 LINE L2 -6 3266 3195 21 0 0 0 chr6 78837062 78837083 -110442471 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 78838285 78838307 -110441247 + AT_rich Low_complexity Low_complexity 1 22 0 36 33 0 16 chr6 78839093 78839123 -110440431 + AT_rich Low_complexity Low_complexity 1 30 -30 1865 127 0 0 chr6 78839123 78839376 -110440178 + AluSg SINE Alu 21 273 -37 36 33 0 16 chr6 78839376 78839406 -110440148 + AT_rich Low_complexity Low_complexity 30 60 0 1909 244 30 2 chr6 78839447 78839951 -110439603 + L1M2 LINE L1 4759 5276 -870 763 109 9 0 chr6 78839964 78840074 -110439480 + THE1C LTR MaLR 1 111 -264 1496 147 35 28 chr6 78840183 78840468 -110439086 + THE1C LTR MaLR 89 375 0 1673 199 82 44 chr6 78840473 78840953 -110438601 + L1M2 LINE L1 5292 5789 -523 715 128 0 0 chr6 78840956 78841065 -110438489 - MLT2A2 LTR ERVL -344 109 1 3605 189 11 30 chr6 78842036 78842911 -110436643 - L1 LINE L1 -1399 4747 3889 33 43 0 0 chr6 78842961 78843008 -110436546 + AT_rich Low_complexity Low_complexity 1 47 0 268 242 44 0 chr6 78844028 78844119 -110435435 - L1MA9 LINE L1 0 6312 6218 421 94 16 0 chr6 78844130 78844194 -110435360 - L1MA9 LINE L1 -188 6124 6060 * 841 179 15 11 chr6 78844189 78844376 -110435178 - L1MA9 LINE L1 -171 6000 5815 1278 170 18 0 chr6 78844377 78844595 -110434959 + L1M2 LINE L1 5509 5730 -582 2207 105 3 7 chr6 78844750 78845054 -110434500 - AluSq SINE Alu -10 303 1 21 0 0 0 chr6 78845232 78845253 -110434301 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr6 78845560 78845586 -110433968 + AT_rich Low_complexity Low_complexity 1 26 0 514 130 10 10 chr6 78846238 78846338 -110433216 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 1994 205 43 49 chr6 78846545 78847053 -110432501 - MLT1D LTR MaLR 0 505 1 366 374 53 18 chr6 78847361 78847532 -110432022 + MER5B DNA MER1_type 2 178 0 22 0 0 0 chr6 78847735 78847757 -110431797 + AT_rich Low_complexity Low_complexity 1 22 0 2069 85 25 3 chr6 78849524 78849807 -110429747 + AluSc SINE Alu 1 289 -20 805 289 56 77 chr6 78850126 78850580 -110428974 + MLT1F1 LTR MaLR 1 500 -93 315 0 0 0 chr6 78850581 78850616 -110428938 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 5517 105 61 8 chr6 78850616 78851548 -110428006 - L1PA10 LINE L1 -21 6147 5166 482 180 20 0 chr6 78851548 78851648 -110427906 + MLT1F LTR MaLR 441 542 0 229 277 12 24 chr6 78851649 78851732 -110427822 + MIR SINE MIR 80 161 -101 204 121 30 0 chr6 78852097 78852130 -110427424 + GA-rich Low_complexity Low_complexity 2 35 0 6471 200 20 40 chr6 78852295 78854342 -110425212 + L1M1 LINE L1 16 2696 -4869 * 9364 197 30 10 chr6 78854327 78856208 -110423346 + L1M1 LINE L1 3711 5642 -1923 1870 181 0 0 chr6 78856208 78856506 -110423048 - AluSx SINE Alu -14 298 1 9364 197 30 10 chr6 78856506 78856766 -110422788 + L1M1 LINE L1 5642 5895 -1670 * 42945 48 1 6 chr6 78856762 78862976 -110416578 + L1PA3 LINE L1 2 6186 0 242 288 81 75 chr6 78862982 78863289 -110416265 - MLT1I LTR MaLR -42 367 70 358 246 31 15 chr6 78864048 78864178 -110415376 + (TA)n Simple_repeat Simple_repeat 1 132 0 299 317 108 6 chr6 78865133 78865300 -110414254 + MIR SINE MIR 17 200 -62 5625 202 59 17 chr6 78865306 78866518 -110413036 + L1MA1 LINE L1 24 1286 -6279 * 5808 170 12 40 chr6 78866513 78867346 -110412208 - L1P LINE L1 -2184 3962 3172 297 0 0 0 chr6 78867346 78867379 -110412175 + (TG)n Simple_repeat Simple_repeat 2 34 0 5808 170 12 40 chr6 78867379 78867756 -110411798 - L1P LINE L1 -2974 3172 2786 6385 147 16 5 chr6 78867759 78869935 -110409619 + L1PA11 LINE L1 3969 6166 -8 12962 174 29 14 chr6 78869954 78872526 -110407028 + L1MA1 LINE L1 1273 3879 -3686 * 20937 107 12 4 chr6 78872522 78876499 -110403055 - L1PA7 LINE L1 -2 6152 2143 12498 184 23 6 chr6 78876507 78879794 -110399760 + L1MA1 LINE L1 4043 7377 -344 297 0 0 0 chr6 78880910 78880979 -110398575 + L1PA2 LINE L1 6109 6177 0 21 57 0 0 chr6 78881204 78881239 -110398315 + AT_rich Low_complexity Low_complexity 1 35 0 237 371 71 0 chr6 78881334 78881504 -110398050 - MIR SINE MIR -40 222 41 182 150 25 0 chr6 78881508 78881548 -110398006 + (TA)n Simple_repeat Simple_repeat 2 42 0 271 164 15 15 chr6 78882022 78882089 -110397465 + (TA)n Simple_repeat Simple_repeat 2 68 0 21 0 0 0 chr6 78882419 78882440 -110397114 + AT_rich Low_complexity Low_complexity 1 21 0 955 272 73 23 chr6 78883686 78884142 -110395412 - MLT1E LTR MaLR 0 593 20 181 371 0 0 chr6 78884239 78884301 -110395253 - L2 LINE L2 -557 2757 2696 220 377 45 26 chr6 78884450 78884604 -110394950 - MIR SINE MIR -58 204 48 22 88 0 0 chr6 78885053 78885110 -110394444 + AT_rich Low_complexity Low_complexity 1 57 0 37 39 0 0 chr6 78885143 78885194 -110394360 + AT_rich Low_complexity Low_complexity 1 51 0 27 92 0 0 chr6 78885366 78885442 -110394112 + AT_rich Low_complexity Low_complexity 1 76 0 188 253 13 0 chr6 78887136 78887211 -110392343 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 34 24 0 0 chr6 78887621 78887662 -110391892 + AT_rich Low_complexity Low_complexity 1 41 0 242 176 33 11 chr6 78887768 78887859 -110391695 + (TA)n Simple_repeat Simple_repeat 1 93 0 315 170 0 32 chr6 78887920 78888014 -110391540 + (TA)n Simple_repeat Simple_repeat 2 92 0 557 245 79 22 chr6 78888056 78888195 -110391359 - FRAM SINE Alu -30 146 1 180 219 0 0 chr6 78888396 78888437 -110391117 + (ATG)n Simple_repeat Simple_repeat 2 42 0 315 270 146 0 chr6 78888450 78888587 -110390967 - MIR SINE MIR -11 251 95 228 356 141 0 chr6 78888891 78889068 -110390486 + MIR SINE MIR 58 259 -3 1552 267 47 74 chr6 78890779 78891708 -110387846 - L1MA10 LINE L1 -3 6331 5428 * 2479 215 16 62 chr6 78891116 78891740 -110387814 - L1MA5 LINE L1 -283 6017 5366 194 61 0 30 chr6 78891740 78891773 -110387781 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1329 208 42 28 chr6 78891776 78892064 -110387490 - AluJo SINE Alu -20 292 1 2479 215 16 62 chr6 78892064 78892345 -110387209 - L1MA5 LINE L1 -936 5364 5159 488 336 60 54 chr6 78892614 78892950 -110386604 + MLT1I LTR MaLR 6 343 -66 2159 217 109 99 chr6 78892968 78893945 -110385609 - L1MA4A LINE L1 0 6303 5317 198 0 0 0 chr6 78893946 78893968 -110385586 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1231 49 0 12 chr6 78893968 78894132 -110385422 - L1PA4 LINE L1 -18 6137 5976 22 35 0 0 chr6 78894897 78894926 -110384628 + AT_rich Low_complexity Low_complexity 1 29 0 284 75 25 0 chr6 78894930 78894970 -110384584 - L1PA16 LINE L1 -24 6142 6102 250 269 134 8 chr6 78895201 78895320 -110384234 + MIR SINE MIR 79 212 -50 8616 209 47 6 chr6 78895681 78897736 -110381818 - L1MA4A LINE L1 -1461 4685 2547 225 0 0 0 chr6 78897861 78897886 -110381668 + (A)n Simple_repeat Simple_repeat 1 25 0 758 296 153 18 chr6 78898192 78898533 -110381021 + MLT1I LTR MaLR 3 389 -20 5365 149 40 15 chr6 78898594 78900004 -110379550 - L1MA4A LINE L1 -11 6292 4853 636 92 0 37 chr6 78900307 78900416 -110379138 - AluSg/x SINE Alu 0 310 206 213 175 25 0 chr6 78900611 78900651 -110378903 + (TA)n Simple_repeat Simple_repeat 1 41 0 408 263 62 33 chr6 78900658 78900938 -110378616 + L1M4 LINE L1 1518 1917 -4727 6952 41 0 0 chr6 78900942 78901813 -110377741 - L1P LINE L1 -2345 3801 2931 * 12131 34 0 1 chr6 78901803 78903265 -110376289 + L1P LINE L1 3799 5259 -887 926 33 0 8 chr6 78903365 78903486 -110376068 - L1PA4 LINE L1 -144 6011 5892 * 1903 226 0 0 chr6 78903478 78903899 -110375655 - L1 LINE L1 -837 5309 4889 6140 202 27 20 chr6 78903900 78905379 -110374175 - L1 LINE L1 -1474 4672 3184 22 56 0 0 chr6 78905532 78905568 -110373986 + AT_rich Low_complexity Low_complexity 1 36 0 260 297 18 36 chr6 78905914 78906025 -110373529 - MIR SINE MIR -67 195 87 1042 107 13 0 chr6 78906031 78906181 -110373373 - AluSg/x SINE Alu -8 304 153 1712 291 81 30 chr6 78906510 78906677 -110372877 + L1ME3A LINE L1 5316 5473 -697 270 0 0 0 chr6 78906677 78906707 -110372847 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1712 291 81 30 chr6 78906707 78907352 -110372202 + L1ME3A LINE L1 5473 6170 0 352 346 49 41 chr6 78908661 78908904 -110370650 + MIR SINE MIR 18 262 0 313 374 109 8 chr6 78909249 78909506 -110370048 - L2 LINE L2 -1893 1421 1139 2421 111 63 2 chr6 78910458 78910855 -110368699 + L1MA1 LINE L1 5882 6302 0 22 0 0 0 chr6 78910865 78910887 -110368667 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 78911791 78911823 -110367731 + AT_rich Low_complexity Low_complexity 1 32 0 315 298 24 0 chr6 78912058 78912142 -110367412 + L2 LINE L2 3227 3312 -1 * 569 339 153 36 chr6 78912139 78912611 -110366943 - L2 LINE L2 -337 2977 2451 1841 273 88 11 chr6 78912611 78913135 -110366419 - MLT1E LTR MaLR -22 571 8 308 312 94 29 chr6 78913139 78913309 -110366245 + MLT1L LTR MaLR 435 615 0 341 256 45 26 chr6 78916170 78916326 -110363228 + L1ME LINE L1 5578 5736 -385 6279 186 46 10 chr6 78916414 78918755 -110360799 - L1MA7 LINE L1 -6 6285 3859 242 232 58 0 chr6 78918757 78918826 -110360728 - L1MA7 LINE L1 -2228 3918 3846 6074 128 20 14 chr6 78918842 78919860 -110359694 - L1MA2 LINE L1 -7 6883 5860 533 66 26 0 chr6 78919862 78919938 -110359616 + AluSg/x SINE Alu 218 295 -14 437 214 0 0 chr6 78919938 78920027 -110359527 - L1MA2 LINE L1 -854 5878 5790 * 929 140 0 0 chr6 78920026 78920176 -110359378 - L1MA2 LINE L1 -1147 5585 5436 5294 193 43 46 chr6 78920276 78922486 -110357068 - L1MA2 LINE L1 -3988 2744 669 237 35 0 0 chr6 78922495 78922524 -110357030 + MER11C LTR ERVK 1 29 -1042 4418 115 22 30 chr6 78922525 78923402 -110356152 + MER11A LTR ERVK 232 1266 0 2091 274 48 0 chr6 78923402 78923858 -110355696 - L1MA2 LINE L1 -6008 645 168 599 286 59 37 chr6 78923841 78924281 -110355273 - L1M3de LINE L1 -5581 1072 2 * 439 217 87 0 chr6 78924355 78924470 -110355084 - L1 LINE L1 -3798 3050 2926 307 217 60 30 chr6 78924474 78924609 -110354945 - L1 LINE L1 -3965 2883 2744 305 315 79 18 chr6 78924614 78924779 -110354775 - L2 LINE L2 -17 3296 3122 252 270 227 18 chr6 78925054 78925217 -110354337 - MIR SINE MIR -17 245 49 21 36 0 0 chr6 78925381 78925409 -110354145 + AT_rich Low_complexity Low_complexity 1 28 0 316 321 284 5 chr6 78925519 78925921 -110353633 - L2 LINE L2 -768 2546 2033 1642 175 0 32 chr6 78926161 78926476 -110353078 + AluJb SINE Alu 1 305 -7 187 159 0 32 chr6 78927057 78927120 -110352434 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 1219 218 31 81 chr6 78927690 78928071 -110351483 - MLT1A2 LTR MaLR -12 362 1 34 79 0 0 chr6 78928539 78928615 -110350939 + AT_rich Low_complexity Low_complexity 1 76 0 813 226 51 96 chr6 78930876 78931199 -110348355 - MLT1D LTR MaLR -167 338 31 192 97 0 0 chr6 78931199 78931230 -110348324 + (TTG)n Simple_repeat Simple_repeat 1 31 0 813 226 51 96 chr6 78931230 78931260 -110348294 - MLT1D LTR MaLR -474 31 1 24 67 0 0 chr6 78931624 78931669 -110347885 + AT_rich Low_complexity Low_complexity 1 45 0 32 0 0 0 chr6 78932453 78932485 -110347069 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 78933582 78933604 -110345950 + AT_rich Low_complexity Low_complexity 1 22 0 335 247 116 20 chr6 78934576 78934722 -110344832 + MER103 DNA DNA 1 160 -6 838 199 6 24 chr6 78934937 78935103 -110344451 - AluJb SINE Alu -10 302 140 6227 45 5 0 chr6 78935205 78935975 -110343579 + L1PA4 LINE L1 5374 6147 -8 38 22 0 0 chr6 78935991 78936036 -110343518 + AT_rich Low_complexity Low_complexity 1 45 0 738 294 57 12 chr6 78936046 78936478 -110343076 + L1ME LINE L1 1600 2154 -4424 1513 163 10 58 chr6 78936548 78936842 -110342712 + AluJo SINE Alu 9 288 -24 344 316 58 7 chr6 78936848 78936987 -110342567 + L1ME LINE L1 2147 2292 -4134 1330 261 112 23 chr6 78937026 78938355 -110341199 + L1ME LINE L1 2420 4057 -2369 3520 176 27 42 chr6 78938411 78939144 -110340410 - MER72 LTR ERV1 0 722 1 2158 123 10 0 chr6 78939365 78939674 -110339880 - AluSx SINE Alu 0 312 1 302 269 19 19 chr6 78939729 78939837 -110339717 - MLT1E3 LTR MaLR -452 172 65 297 286 48 16 chr6 78939737 78939863 -110339691 - MLT2C1 LTR ERVL -254 143 14 * 345 257 29 0 chr6 78939878 78939983 -110339571 + L1ME LINE L1 4061 4168 -2258 1256 237 62 4 chr6 78940017 78940406 -110339148 + L1ME LINE L1 5443 5879 -567 10654 122 55 44 chr6 78940872 78943082 -110336472 + L1P3 LINE L1 4 2286 -4175 326 306 31 47 chr6 78943189 78943575 -110335979 - L1ME LINE L1 -5113 957 578 771 307 27 0 chr6 78945425 78945650 -110333904 + MIR SINE MIR 2 232 -30 3898 169 31 11 chr6 78945704 78946446 -110333108 + Tigger2 DNA MER2_type 1 757 -1961 1231 149 60 36 chr6 78946503 78946752 -110332802 + Tigger2 DNA MER2_type 2464 2718 0 247 330 89 0 chr6 78947310 78947422 -110332132 + MIR SINE MIR 59 180 -82 531 287 66 24 chr6 78947582 78947749 -110331805 - MIR SINE MIR -45 217 44 242 368 23 0 chr6 78947752 78947839 -110331715 - MER91A DNA MER1_type -36 160 72 379 271 40 34 chr6 78948336 78948513 -110331041 + MER5B DNA MER1_type 1 178 0 186 321 0 0 chr6 78948780 78948833 -110330721 + MIR SINE MIR 210 262 0 1163 117 0 39 chr6 78949405 78949585 -110329969 - AluSq SINE Alu -15 298 126 1275 234 57 77 chr6 78949800 78950331 -110329223 - MLT2B1 LTR ERVL 0 520 1 387 340 19 19 chr6 78950904 78951060 -110328494 + MIR SINE MIR 90 245 -17 1491 198 38 26 chr6 78952434 78952520 -110327034 + MER2 DNA MER2_type 1 84 -260 2131 103 0 7 chr6 78952520 78952821 -110326733 + AluSc SINE Alu 1 299 -10 1491 198 38 26 chr6 78952821 78953073 -110326481 + MER2 DNA MER2_type 84 343 -1 501 328 43 17 chr6 78953472 78953707 -110325847 + L1M4 LINE L1 2 242 -6300 262 170 0 0 chr6 78953734 78953787 -110325767 + L1MB5 LINE L1 6116 6168 -6 189 107 0 0 chr6 78953790 78953818 -110325736 + (GAA)n Simple_repeat Simple_repeat 1 28 0 1256 235 151 11 chr6 78953855 78954311 -110325243 + L1MC4 LINE L1 7485 8004 -38 208 381 51 0 chr6 78954377 78954495 -110325059 + L2 LINE L2 2173 2296 -1018 252 377 40 40 chr6 78954684 78955005 -110324549 + L2 LINE L2 2418 2738 -576 629 324 60 25 chr6 78955092 78955376 -110324178 + L2 LINE L2 3020 3313 0 184 351 0 0 chr6 78955893 78955950 -110323604 + L2 LINE L2 3254 3310 -3 3098 22 0 8 chr6 78956035 78956404 -110323150 + L1PA2 LINE L1 5685 6050 -105 281 347 100 21 chr6 78956640 78956830 -110322724 - MIR SINE MIR -27 235 31 935 191 17 56 chr6 78956924 78957155 -110322399 + LTR51 LTR ERV1 1 222 -449 777 202 113 0 chr6 78957149 78957317 -110322237 + LTR51 LTR ERV1 371 557 -114 * 1275 110 0 20 chr6 78957321 78957521 -110322033 + AluY SINE Alu 108 303 -8 665 178 8 0 chr6 78957522 78957640 -110321914 + LTR51 LTR ERV1 553 671 0 380 300 123 53 chr6 78957669 78957702 -110321852 - MIR SINE MIR -71 191 162 1493 243 11 27 chr6 78957702 78958073 -110321481 + MLT1A1 LTR MaLR 1 365 0 380 300 123 53 chr6 78958073 78958209 -110321345 - MIR SINE MIR -100 162 10 6067 148 27 13 chr6 78958248 78958821 -110320733 + L1MA2 LINE L1 4957 5521 -783 2316 121 11 32 chr6 78958821 78959193 -110320361 - THE1B LTR MaLR 0 364 1 6067 148 27 13 chr6 78959193 78959951 -110319603 + L1MA2 LINE L1 5521 6304 0 414 0 0 0 chr6 78960017 78960063 -110319491 + (TA)n Simple_repeat Simple_repeat 2 47 0 221 368 23 23 chr6 78960205 78960338 -110319216 + MIR SINE MIR 72 204 -58 207 0 0 0 chr6 78961050 78961073 -110318481 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 25 31 0 0 chr6 78961264 78961296 -110318258 + AT_rich Low_complexity Low_complexity 1 32 0 348 195 12 0 chr6 78961382 78961464 -110318090 - L1MA1 LINE L1 0 6302 6220 24 53 0 0 chr6 78961507 78961545 -110318009 + AT_rich Low_complexity Low_complexity 1 38 0 203 190 0 52 chr6 78961884 78961942 -110317612 + T-rich Low_complexity Low_complexity 5 59 0 2123 117 16 3 chr6 78963051 78963359 -110316195 - AluSx SINE Alu 0 312 1 224 333 9 35 chr6 78963643 78963757 -110315797 - MIR SINE MIR -104 158 48 26 0 0 0 chr6 78963764 78963790 -110315764 + AT_rich Low_complexity Low_complexity 1 26 0 423 283 114 25 chr6 78964333 78964658 -110314896 - L1ME3A LINE L1 -230 5940 5587 326 351 80 27 chr6 78964659 78964921 -110314633 - L1ME3A LINE L1 -2215 5570 5295 232 234 16 0 chr6 78964937 78965001 -110314553 - L1 LINE L1 -867 5279 5215 1385 204 97 34 chr6 78965358 78965461 -110314093 - L1MA9 LINE L1 -32 6280 6185 194 0 39 0 chr6 78965461 78965487 -110314067 + (TG)n Simple_repeat Simple_repeat 1 27 0 1385 204 97 34 chr6 78965487 78965766 -110313788 - L1MA9 LINE L1 -127 6185 5874 425 105 0 96 chr6 78965768 78965860 -110313694 + L1MC/D LINE L1 5516 5599 -700 1457 215 65 0 chr6 78966199 78966524 -110313030 - MER7A DNA MER2_type 0 346 3 187 240 20 0 chr6 78966646 78966696 -110312858 + L2 LINE L2 3222 3272 0 21 36 0 0 chr6 78967125 78967153 -110312401 + AT_rich Low_complexity Low_complexity 1 28 0 2741 248 81 18 chr6 78967931 78968962 -110310592 - L1MC4 LINE L1 0 8042 6948 200 214 29 10 chr6 78969011 78969033 -110310521 + (TA)n Simple_repeat Simple_repeat 2 22 -84 1954 134 7 7 chr6 78969033 78969340 -110310214 - AluSg SINE Alu -3 307 1 200 214 29 10 chr6 78969340 78969420 -110310134 + (TA)n Simple_repeat Simple_repeat 22 106 0 462 233 0 19 chr6 78969491 78969594 -110309960 - L1MC4 LINE L1 -1176 6866 6766 425 50 17 0 chr6 78969617 78969677 -110309877 + (TG)n Simple_repeat Simple_repeat 2 62 0 2084 131 7 3 chr6 78969699 78970004 -110309550 - AluSg SINE Alu -4 306 1 309 212 129 0 chr6 78970004 78970089 -110309465 - L1MC4 LINE L1 -1381 6661 6566 352 182 0 13 chr6 78970129 78970206 -110309348 + L1MB2 LINE L1 6073 6148 -23 432 237 79 7 chr6 78970246 78970385 -110309169 - L1MC4a LINE L1 -1267 6541 6393 243 315 27 0 chr6 78970418 78970491 -110309063 + LTR16B LTR ERVL 67 141 -323 335 341 45 0 chr6 78970529 78970661 -110308893 + LTR16B LTR ERVL 141 278 -186 22588 124 23 13 chr6 78970703 78975147 -110304407 + L1PA7 LINE L1 1116 5517 -706 1958 98 12 0 chr6 78975147 78975402 -110304152 + AluY SINE Alu 26 283 -28 22588 124 23 13 chr6 78975402 78975416 -110304138 + L1PA7 LINE L1 5517 5529 -694 234 0 0 0 chr6 78975416 78975442 -110304112 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 22588 124 23 13 chr6 78975442 78975768 -110303786 + L1PA7 LINE L1 5529 6217 -6 1881 137 3 0 chr6 78975854 78976138 -110303416 - AluSx SINE Alu -11 301 17 23 0 0 0 chr6 78977138 78977161 -110302393 + AT_rich Low_complexity Low_complexity 1 23 0 1961 155 15 9 chr6 78978173 78978515 -110301039 - MER50 LTR ERV1 -390 344 1 26 30 0 0 chr6 78979349 78979382 -110300172 + AT_rich Low_complexity Low_complexity 1 33 0 24 85 0 0 chr6 78981051 78981110 -110298444 + AT_rich Low_complexity Low_complexity 1 59 0 23 0 0 0 chr6 78981427 78981450 -110298104 + AT_rich Low_complexity Low_complexity 1 23 0 2379 78 0 3 chr6 78981494 78981802 -110297752 - AluY SINE Alu -4 307 1 2258 61 7 3 chr6 78982360 78982657 -110296897 + L1PA8A LINE L1 5806 6103 -28 23 0 0 0 chr6 78982854 78982877 -110296677 + AT_rich Low_complexity Low_complexity 1 23 0 1991 134 37 35 chr6 78983396 78983770 -110295784 - THE1C LTR MaLR 0 375 1 880 206 16 16 chr6 78983804 78983993 -110295561 - MER5A DNA MER1_type 0 189 1 3130 185 45 92 chr6 78984292 78984853 -110294701 + L1MCa LINE L1 20 531 -5895 2391 74 0 19 chr6 78984853 78985165 -110294389 + AluY SINE Alu 1 306 -5 3130 185 45 92 chr6 78985165 78985440 -110294114 + L1MCa LINE L1 531 817 -5609 15271 184 53 33 chr6 78985441 78987628 -110291926 + L1PA15-16 LINE L1 1 2340 -4509 2347 88 0 0 chr6 78987628 78987922 -110291632 + AluY SINE Alu 1 294 -17 15271 184 53 33 chr6 78987922 78989418 -110290136 + L1PA15-16 LINE L1 2340 3804 -3045 3084 128 11 2 chr6 78989433 78989910 -110289644 + HERVL LTR ERVL 1140 1620 -4034 612 168 10 0 chr6 78990013 78990114 -110289440 - AluJ/FLAM SINE Alu -210 102 1 1134 298 117 6 chr6 78992726 78993237 -110286317 + L2 LINE L2 1649 2216 -1098 23 33 0 0 chr6 78993412 78993442 -110286112 + AT_rich Low_complexity Low_complexity 1 30 0 291 344 21 0 chr6 78993588 78993681 -110285873 + MIR3 SINE MIR 82 176 -32 365 313 60 18 chr6 78994328 78994494 -110285060 - MIR SINE MIR -71 191 19 896 254 18 18 chr6 78994937 78995161 -110284393 + MIR SINE MIR 5 228 -34 21 36 0 0 chr6 78995505 78995533 -110284021 + AT_rich Low_complexity Low_complexity 1 28 0 193 310 46 11 chr6 78996694 78996781 -110282773 - L2 LINE L2 -1 3312 3223 230 278 124 10 chr6 78997105 78997202 -110282352 + L2 LINE L2 2934 3041 -231 257 241 60 24 chr6 78997271 78997354 -110282200 - L2 LINE L2 -1 3312 3227 202 371 0 0 chr6 78997570 78997640 -110281914 + L2 LINE L2 2709 2778 -536 2500 237 138 43 chr6 78998534 78998690 -110280864 - L1MC4 LINE L1 -95 7713 7573 1505 199 45 65 chr6 78998690 78999088 -110280466 + MLT1B LTR MaLR 1 390 0 2500 237 138 43 chr6 78999088 78999532 -110280022 - L1MC4 LINE L1 -235 7573 7172 1809 187 80 34 chr6 78999532 78999944 -110279610 + MSTB1 LTR MaLR 1 431 -1 2500 237 138 43 chr6 78999944 79000585 -110278969 - L1MC4 LINE L1 -636 7172 6472 286 318 12 0 chr6 79001149 79001234 -110278320 + MER5B DNA MER1_type 50 135 -43 426 137 0 0 chr6 79001245 79001318 -110278236 - Alu SINE Alu -6 306 234 438 281 39 1 chr6 79001414 79001619 -110277935 + MLT1E LTR MaLR 1 232 -422 1306 229 64 18 chr6 79001619 79001947 -110277607 - MSTD LTR MaLR 0 396 54 1382 252 18 64 chr6 79002051 79002440 -110277114 + MLT1E LTR MaLR 223 593 0 997 220 10 152 chr6 79002745 79002914 -110276640 + MLT1A1 LTR MaLR 11 88 -277 258 116 0 0 chr6 79002914 79002957 -110276597 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 997 220 10 152 chr6 79002957 79003201 -110276353 + MLT1A1 LTR MaLR 88 365 0 381 138 0 0 chr6 79004001 79004066 -110275488 - L1PA16 LINE L1 -9 6157 6093 1889 178 23 3 chr6 79004120 79004474 -110275080 - L1MC1 LINE L1 -11 6322 5962 3133 193 39 0 chr6 79004474 79005039 -110274515 + LTR69 LTR ERVL 2 588 0 2303 213 66 2 chr6 79005039 79005569 -110273985 - L1MC1 LINE L1 -2028 5967 5404 3381 67 23 5 chr6 79005569 79006005 -110273549 - MLT2A1 LTR ERVL 0 444 1 6614 76 18 0 chr6 79006005 79006864 -110272690 - HERVL-A1 LTR ERVL 0 5654 4781 5736 105 25 1 chr6 79006856 79007666 -110271888 - HERVL LTR ERVL -3338 2316 1488 * 30 27 0 0 chr6 79007800 79007837 -110271717 + AT_rich Low_complexity Low_complexity 1 37 0 258 308 120 39 chr6 79008448 79008656 -110270898 + MIR SINE MIR 1 225 -37 227 244 37 126 chr6 79008773 79008908 -110270646 + MIR SINE MIR 21 143 -65 267 31 0 0 chr6 79008968 79009000 -110270554 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 290 26 26 0 chr6 79008999 79009038 -110270516 + (CA)n Simple_repeat Simple_repeat 1 40 0 643 266 120 13 chr6 79009263 79009645 -110269909 + L1MC4a LINE L1 5472 5653 -468 26 88 0 0 chr6 79010144 79010212 -110269342 + AT_rich Low_complexity Low_complexity 1 68 0 1788 138 12 0 chr6 79010850 79011029 -110268525 - AluSx SINE Alu 0 312 127 2125 117 14 0 chr6 79011029 79011319 -110268235 - AluSq SINE Alu -19 294 1 1788 138 12 0 chr6 79011319 79011420 -110268134 - AluSx SINE Alu -185 127 29 345 268 93 93 chr6 79011437 79011747 -110267807 + MLT1J LTR MaLR 195 504 -7 1592 196 0 10 chr6 79012374 79012665 -110266889 + AluJb SINE Alu 1 288 -24 2072 155 46 0 chr6 79014155 79014504 -110265050 - MLT1A1 LTR MaLR 0 365 1 339 229 267 15 chr6 79014706 79014837 -110264717 - MER5A DNA MER1_type 0 189 26 358 211 156 0 chr6 79014844 79014934 -110264620 - ORSL DNA AcHobo -170 105 2 274 297 138 21 chr6 79015368 79015513 -110264041 + L2 LINE L2 3144 3305 -8 366 226 36 0 chr6 79016180 79016264 -110263290 - L2 LINE L2 0 3313 3227 1145 249 33 25 chr6 79016308 79016680 -110262874 + MLT1A2 LTR MaLR 1 467 0 3482 216 27 41 chr6 79016718 79018037 -110261517 + L1MB7 LINE L1 4855 6154 -30 182 293 180 27 chr6 79018169 79018319 -110261235 - L2 LINE L2 -454 2860 2688 447 35 0 0 chr6 79018679 79018737 -110260817 - L1PA4 LINE L1 -2 6153 6096 34 24 0 0 chr6 79018818 79018859 -110260695 + AT_rich Low_complexity Low_complexity 1 41 0 610 282 83 83 chr6 79018922 79019415 -110260139 + L1M2 LINE L1 18 510 -6339 244 341 83 52 chr6 79020215 79020444 -110259110 + L1M2 LINE L1 892 1127 -5722 4586 219 83 22 chr6 79020444 79021005 -110258549 + L1PA15-16 LINE L1 690 1215 -4988 222 37 0 0 chr6 79021005 79021032 -110258522 + (CA)n Simple_repeat Simple_repeat 2 28 0 180 77 0 0 chr6 79021034 79021060 -110258494 + (TA)n Simple_repeat Simple_repeat 2 27 0 4586 219 83 22 chr6 79021060 79022204 -110257350 + L1PA15-16 LINE L1 1215 2512 -3691 30 27 0 0 chr6 79022204 79022241 -110257313 + AT_rich Low_complexity Low_complexity 1 37 0 1035 202 0 0 chr6 79022248 79022441 -110257113 - MST-int LTR MaLR -1090 561 369 270 258 56 0 chr6 79022469 79022558 -110256996 + L1MC4 LINE L1 6610 6703 -1339 252 0 0 0 chr6 79022558 79022586 -110256968 + (TA)n Simple_repeat Simple_repeat 2 29 0 315 0 0 0 chr6 79022586 79022621 -110256933 + (GA)n Simple_repeat Simple_repeat 2 36 0 800 259 10 0 chr6 79022621 79022818 -110256736 - L1 LINE L1 -3499 2647 2449 8762 157 19 37 chr6 79022820 79024396 -110255158 - MSTA-int LTR MaLR -30 1550 3 1407 192 176 16 chr6 79024398 79024767 -110254787 - MSTA LTR MaLR 0 428 1 753 243 20 20 chr6 79024790 79025041 -110254513 + L1 LINE L1 3239 3489 -2657 * 919 241 9 0 chr6 79025037 79025265 -110254289 + L1 LINE L1 3772 4001 -2145 * 1246 159 53 12 chr6 79025259 79025504 -110254050 + L1PA16 LINE L1 5891 6145 -21 1828 204 24 3 chr6 79025571 79025953 -110253601 + MLT1B LTR MaLR 1 390 0 560 218 75 54 chr6 79025972 79026211 -110253343 - L1MC4 LINE L1 -1 8041 7798 208 188 21 0 chr6 79026305 79026353 -110253201 + (TA)n Simple_repeat Simple_repeat 2 50 0 716 234 72 0 chr6 79026362 79026571 -110252983 - L1MC4 LINE L1 -657 7385 7162 293 331 159 28 chr6 79027879 79028205 -110251349 - LTR33 LTR ERVL 0 521 153 30 0 0 0 chr6 79028749 79028779 -110250775 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr6 79029251 79029272 -110250282 + (CA)n Simple_repeat Simple_repeat 1 21 0 199 294 47 24 chr6 79029453 79029538 -110250016 + MIR SINE MIR 165 251 -11 544 306 92 38 chr6 79030189 79030450 -110249104 + LTR33 LTR ERVL 9 283 -238 25 0 0 0 chr6 79031013 79031038 -110248516 + AT_rich Low_complexity Low_complexity 1 25 0 1679 107 57 60 chr6 79031586 79031884 -110247670 + AluSx SINE Alu 5 301 -11 259 327 121 32 chr6 79032698 79033436 -110246118 - L1MEd LINE L1 -2267 3862 3060 236 143 14 57 chr6 79033605 79033675 -110245879 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 591 323 90 28 chr6 79034719 79035303 -110244251 - L1MEd LINE L1 -4613 1697 1034 1284 313 122 37 chr6 79035304 79036220 -110243334 - L1MEd LINE L1 -5123 996 3 1162 136 21 0 chr6 79036881 79037072 -110242482 - L1PA16 LINE L1 -9 6157 5963 22 0 0 0 chr6 79037712 79037734 -110241820 + AT_rich Low_complexity Low_complexity 1 22 0 1908 149 149 8 chr6 79038482 79038857 -110240697 + MSTA LTR MaLR 1 428 0 8620 142 28 35 chr6 79038859 79040448 -110239106 + MSTA-int LTR MaLR 3 1580 0 1618 187 171 3 chr6 79040452 79040815 -110238739 + MSTA LTR MaLR 5 428 0 849 232 53 47 chr6 79041339 79041629 -110237925 - L1ME3A LINE L1 -1 6161 5878 2251 76 3 0 chr6 79041629 79041918 -110237636 - AluY SINE Alu -21 290 1 849 232 53 47 chr6 79041918 79041950 -110237604 - L1ME3A LINE L1 -284 5878 5848 1620 239 92 26 chr6 79045239 79045882 -110233672 + L1M4 LINE L1 4616 5300 -846 510 316 136 7 chr6 79045898 79046199 -110233355 - L2 LINE L2 -2401 913 574 496 274 68 82 chr6 79046270 79046489 -110233065 + MIR SINE MIR 47 262 0 2350 224 54 16 chr6 79048349 79048961 -110230593 + L1MD3 LINE L1 7361 7995 0 31 0 0 0 chr6 79048961 79048992 -110230562 + AT_rich Low_complexity Low_complexity 1 31 0 219 279 128 12 chr6 79049164 79049250 -110230304 - MIR SINE MIR -69 139 44 23 0 0 0 chr6 79049714 79049737 -110229817 + AT_rich Low_complexity Low_complexity 1 23 0 5176 12 0 0 chr6 79050300 79050888 -110228666 + L1HS LINE L1 5568 6155 0 1969 117 63 23 chr6 79051275 79051625 -110227929 - THE1B LTR MaLR 0 364 1 237 323 48 0 chr6 79052683 79052745 -110226809 - L2 LINE L2 -86 3186 3122 32 0 0 0 chr6 79054252 79054284 -110225270 + AT_rich Low_complexity Low_complexity 1 32 0 1668 138 33 22 chr6 79054298 79054573 -110224981 - AluSg SINE Alu -30 280 3 2093 178 32 24 chr6 79054777 79055292 -110224262 + MLT2A2 LTR ERVL 1 480 -40 240 238 0 48 chr6 79055296 79055380 -110224174 + L1MC4 LINE L1 6624 6703 -1339 296 154 39 0 chr6 79055410 79055462 -110224092 + MLT2A2 LTR ERVL 400 453 0 31 99 0 0 chr6 79056305 79056406 -110223148 + AT_rich Low_complexity Low_complexity 1 101 0 314 301 32 11 chr6 79057383 79057476 -110222078 + LTR16A1 LTR ERVL 6 100 -357 * 356 274 60 8 chr6 79057475 79057592 -110221962 + LTR16A1 LTR ERVL 331 453 -4 21 0 0 0 chr6 79057926 79057947 -110221607 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 79058062 79058085 -110221469 + AT_rich Low_complexity Low_complexity 1 23 0 1286 217 158 22 chr6 79060041 79060502 -110219052 + LTR45 LTR ERV1 2 525 0 978 222 30 21 chr6 79060937 79061171 -110218383 - MLT1A1 LTR MaLR -129 236 1 1108 93 0 0 chr6 79111797 79111936 -110167618 - AluSq/x SINE Alu -174 139 1 1649 226 70 27 chr6 79112009 79112496 -110167058 + MLT2F LTR ERVL 156 663 0 224 309 88 59 chr6 79112624 79112760 -110166794 - L2 LINE L2 -8 3264 3125 32 58 0 35 chr6 79113086 79113172 -110166382 + AT_rich Low_complexity Low_complexity 1 83 0 2286 108 0 0 chr6 79113178 79113485 -110166069 - AluSg1 SINE Alu -2 307 1 317 350 0 10 chr6 79114636 79114739 -110164815 - MIR SINE MIR -62 146 45 25 0 0 0 chr6 79115097 79115122 -110164432 + AT_rich Low_complexity Low_complexity 1 25 0 241 361 89 30 chr6 79115282 79115484 -110164070 + MIR SINE MIR 8 221 -41 24299 92 9 10 chr6 79116784 79119871 -110159683 - HERVL LTR ERVL -1109 4545 1459 1886 156 3 17 chr6 79119871 79120210 -110159344 - AluSx SINE Alu 0 335 1 24299 92 9 10 chr6 79120210 79120576 -110158978 - HERVL LTR ERVL -4195 1459 1094 6552 70 0 9 chr6 79120579 79121468 -110158086 - HERVL-A2 LTR ERVL -4773 881 1 340 73 0 18 chr6 79121468 79121523 -110158031 - MLT2A2 LTR ERVL 0 453 400 232 192 0 51 chr6 79121531 79121609 -110157945 + (TA)n Simple_repeat Simple_repeat 1 74 0 1963 118 18 50 chr6 79121614 79121954 -110157600 - MLT2A2 LTR ERVL -55 398 70 5017 31 18 0 chr6 79121954 79122568 -110156986 - L1PA4 LINE L1 -2026 4120 3496 10363 25 3 1 chr6 79122563 79124649 -110154905 + L1PA4 LINE L1 4108 6155 0 457 93 80 0 chr6 79124668 79124743 -110154811 - MLT2A2 LTR ERVL -372 81 1 1207 293 118 32 chr6 79124772 79125656 -110153898 - L1MC4a LINE L1 -402 7406 6447 1145 168 14 0 chr6 79125683 79125903 -110153651 - L1MA7 LINE L1 -6 6285 6063 7657 86 18 3 chr6 79126003 79127044 -110152510 + HERVL-A2 LTR ERVL 4598 5654 0 2836 104 48 23 chr6 79127044 79127486 -110152068 + MLT2A2 LTR ERVL 1 453 0 253 228 186 61 chr6 79127494 79127757 -110151797 + L1MC4 LINE L1 7506 7801 -241 318 26 0 0 chr6 79127992 79128031 -110151523 + (TG)n Simple_repeat Simple_repeat 2 40 0 203 217 43 0 chr6 79128057 79128103 -110151451 - MER5A DNA MER1_type -77 112 65 826 163 39 8 chr6 79129239 79129413 -110150141 + MLT1C LTR MaLR 305 465 -2 333 357 8 16 chr6 79129434 79129563 -110149991 - MIR SINE MIR -133 129 2 443 263 116 46 chr6 79129730 79129989 -110149565 + L1ME LINE L1 5542 5818 -303 1649 217 101 25 chr6 79131487 79131962 -110147592 - MER70B LTR ERVL -67 511 1 446 286 246 8 chr6 79131962 79132214 -110147340 + L2 LINE L2 2999 3310 -3 21 82 0 0 chr6 79132354 79132403 -110147151 + AT_rich Low_complexity Low_complexity 1 49 0 679 256 67 0 chr6 79133001 79133165 -110146389 - MER58A DNA MER1_type -48 176 2 198 288 110 27 chr6 79133166 79133196 -110146358 + MIR SINE MIR 131 157 -105 180 0 0 0 chr6 79133196 79133216 -110146338 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 198 288 110 27 chr6 79133216 79133258 -110146296 + MIR SINE MIR 157 209 -53 1185 137 29 10 chr6 79134413 79134617 -110144937 + Tigger2 DNA MER2_type 1 208 -2510 744 203 16 22 chr6 79134588 79134770 -110144784 + Tigger2 DNA MER2_type 2528 2708 -10 * 21 36 0 0 chr6 79134945 79134973 -110144581 + AT_rich Low_complexity Low_complexity 1 28 0 38 22 0 0 chr6 79135052 79135097 -110144457 + AT_rich Low_complexity Low_complexity 1 45 0 331 273 8 33 chr6 79135195 79135316 -110144238 - MIR SINE MIR -25 237 120 294 331 101 30 chr6 79135360 79135529 -110144025 - MIR SINE MIR -75 187 7 180 0 0 0 chr6 79135945 79135965 -110143589 + (TCTA)n Simple_repeat Simple_repeat 3 22 0 870 197 10 5 chr6 79136550 79136743 -110142811 + AluSq SINE Alu 120 313 0 22 99 0 0 chr6 79136750 79136821 -110142733 + AT_rich Low_complexity Low_complexity 1 71 0 402 371 60 62 chr6 79137170 79137639 -110141915 + L3 LINE CR1 36 503 -1074 207 273 0 0 chr6 79137740 79137784 -110141770 - L2 LINE L2 -86 3227 3184 191 324 42 0 chr6 79137847 79137918 -110141636 + L3 LINE CR1 688 761 -816 530 308 32 54 chr6 79138033 79138348 -110141206 + MLT1G1 LTR MaLR 110 417 -178 205 200 18 0 chr6 79138473 79138528 -110141026 + CT-rich Low_complexity Low_complexity 1 56 0 198 0 0 0 chr6 79138531 79138553 -110141001 + (CA)n Simple_repeat Simple_repeat 1 22 0 2180 107 0 3 chr6 79138973 79139273 -110140281 - AluSq SINE Alu -14 299 1 238 355 97 53 chr6 79139324 79139780 -110139774 + L2 LINE L2 2838 3313 0 356 343 99 6 chr6 79139915 79140087 -110139467 + L3 LINE CR1 1049 1236 -341 188 351 0 0 chr6 79140180 79140237 -110139317 - L2 LINE L2 -3 3310 3254 645 61 0 0 chr6 79140325 79140407 -110139147 - L1PA8 LINE L1 -182 5990 5909 458 79 11 90 chr6 79140407 79140491 -110139063 + L1PA8 LINE L1 6090 6171 -1 343 346 47 47 chr6 79140656 79140890 -110138664 - L2 LINE L2 -338 2976 2743 180 0 0 0 chr6 79141011 79141031 -110138523 + (CA)n Simple_repeat Simple_repeat 1 20 0 875 232 5 0 chr6 79141131 79141316 -110138238 + MLT1B LTR MaLR 205 390 0 1229 321 119 64 chr6 79141316 79142741 -110136813 - L2 LINE L2 -787 2527 1024 1329 250 140 30 chr6 79142754 79143267 -110136287 - MLT1F1 LTR MaLR -3 564 1 4747 25 4 0 chr6 79143483 79144043 -110135511 + L1PA3 LINE L1 5594 6155 0 2588 0 0 0 chr6 79144051 79144395 -110135159 + AluYa5 SINE Alu 1 344 0 256 333 85 20 chr6 79145366 79145519 -110134035 - MIR3 SINE MIR -14 194 32 25 31 0 0 chr6 79146060 79146092 -110133462 + AT_rich Low_complexity Low_complexity 1 32 0 387 212 0 0 chr6 79146216 79146301 -110133253 + (TA)n Simple_repeat Simple_repeat 1 85 0 200 111 28 0 chr6 79146964 79147000 -110132554 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 263 294 22 0 chr6 79147004 79147096 -110132458 + (TA)n Simple_repeat Simple_repeat 1 94 0 203 350 0 0 chr6 79149440 79149543 -110130011 + C-rich Low_complexity Low_complexity 1 103 0 256 248 23 23 chr6 79149636 79149769 -110129785 + (CG)n Simple_repeat Simple_repeat 1 133 0 369 0 0 0 chr6 79150907 79150948 -110128606 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 189 0 0 0 chr6 79152081 79152102 -110127452 + (GAAAA)n Simple_repeat Simple_repeat 2 22 0 28 61 0 0 chr6 79156310 79156359 -110123195 + AT_rich Low_complexity Low_complexity 1 49 0 234 0 0 0 chr6 79157905 79157931 -110121623 + (T)n Simple_repeat Simple_repeat 1 26 0 1979 122 7 3 chr6 79158122 79158416 -110121138 + AluSg1 SINE Alu 1 295 -14 203 61 30 0 chr6 79158461 79158494 -110121060 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 22 56 0 0 chr6 79158798 79158834 -110120720 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 79159814 79159835 -110119719 + AT_rich Low_complexity Low_complexity 1 21 0 2210 112 0 0 chr6 79160041 79160354 -110119200 + AluSq SINE Alu 1 313 0 30 45 0 0 chr6 79162619 79162663 -110116891 + AT_rich Low_complexity Low_complexity 1 44 0 181 345 12 24 chr6 79163040 79163124 -110116430 - L3 LINE CR1 -4 1573 1491 327 268 120 35 chr6 79163679 79163913 -110115641 + LTR33 LTR ERVL 257 520 -1 710 281 35 59 chr6 79166774 79167179 -110112375 + MLT1I LTR MaLR 8 402 -7 272 340 0 0 chr6 79167643 79167737 -110111817 + T-rich Low_complexity Low_complexity 5 98 0 207 100 0 0 chr6 79167743 79167773 -110111781 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 347 239 146 126 chr6 79169034 79169281 -110110273 + MIR SINE MIR 1 252 -10 234 269 103 63 chr6 79170188 79170363 -110109191 + MIR SINE MIR 81 262 0 198 272 26 132 chr6 79170613 79170727 -110108827 + MIR SINE MIR 50 151 -111 584 314 92 0 chr6 79171893 79172122 -110107432 - MIR SINE MIR -1 261 5 22 56 0 0 chr6 79172864 79172900 -110106654 + AT_rich Low_complexity Low_complexity 1 36 0 41 66 0 0 chr6 79174057 79174133 -110105421 + AT_rich Low_complexity Low_complexity 1 76 0 24 0 0 0 chr6 79174831 79174855 -110104699 + AT_rich Low_complexity Low_complexity 1 24 0 238 179 0 0 chr6 79175171 79175227 -110104327 + L1MC4 LINE L1 6648 6703 -1339 372 189 0 0 chr6 79175227 79175301 -110104253 + (TA)n Simple_repeat Simple_repeat 2 75 0 226 119 0 0 chr6 79175301 79175343 -110104211 + LTR66 LTR ERVL 398 439 -171 23 0 0 0 chr6 79176310 79176333 -110103221 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr6 79176696 79176748 -110102806 + AT_rich Low_complexity Low_complexity 1 52 0 30 0 0 0 chr6 79177180 79177210 -110102344 + AT_rich Low_complexity Low_complexity 1 30 0 1401 237 22 16 chr6 79178072 79178435 -110101119 + MLT1A1 LTR MaLR 1 365 0 323 235 197 15 chr6 79178450 79178582 -110100972 - MIR SINE MIR -105 157 2 664 26 0 0 chr6 79178949 79179026 -110100528 - U3 snRNA snRNA -140 77 1 226 333 9 45 chr6 79179297 79179408 -110100146 + MIR SINE MIR 146 252 -10 218 296 0 0 chr6 79179836 79179890 -110099664 + MIR SINE MIR 87 140 -68 428 276 0 43 chr6 79181418 79181534 -110098020 - MLT1H LTR MaLR -337 212 102 277 198 157 58 chr6 79181709 79181830 -110097724 + MLT1F LTR MaLR 370 502 -40 223 371 6 63 chr6 79182505 79182680 -110096874 + L2 LINE L2 2914 3078 -194 28 0 0 0 chr6 79182835 79182863 -110096691 + AT_rich Low_complexity Low_complexity 1 28 0 3192 107 22 47 chr6 79182864 79183385 -110096169 - L1MA1 LINE L1 -10 6292 5784 351 0 0 0 chr6 79183385 79183424 -110096130 + (TG)n Simple_repeat Simple_repeat 2 40 0 3192 107 22 47 chr6 79183424 79183455 -110096099 - L1MA1 LINE L1 -518 5784 5754 1003 196 9 23 chr6 79183556 79183775 -110095779 - L1MA8 LINE L1 -419 5872 5657 261 281 0 0 chr6 79183781 79183838 -110095716 - MER2 DNA MER2_type -1 344 288 * 323 180 0 0 chr6 79183837 79183887 -110095667 - MER2 DNA MER2_type -19 326 277 6330 244 21 40 chr6 79184272 79186036 -110093518 + L1PA13 LINE L1 1358 3048 -3749 6845 64 2 12 chr6 79186036 79186862 -110092692 + L1PA7 LINE L1 4665 5477 -677 2215 88 41 3 chr6 79186862 79187156 -110092398 + AluY SINE Alu 1 305 -6 6845 64 2 12 chr6 79187156 79187828 -110091726 + L1PA7 LINE L1 5477 6154 0 6330 244 21 40 chr6 79187828 79188853 -110090701 + L1PA13 LINE L1 3048 4091 -2706 563 219 7 7 chr6 79188884 79189021 -110090533 + L1PA13 LINE L1 4836 4972 -1825 5622 214 24 42 chr6 79189022 79190506 -110089048 + L1PA15 LINE L1 3441 4898 -1248 2395 151 11 3 chr6 79190506 79190877 -110088677 + THE1C LTR MaLR 1 374 -1 9327 123 42 40 chr6 79190879 79192455 -110087099 + THE1C-int LTR MaLR 2 1580 0 2147 136 54 3 chr6 79192460 79192812 -110086742 + THE1C LTR MaLR 6 375 0 5330 155 2 6 chr6 79192812 79194081 -110085473 + L1PA15 LINE L1 4894 6165 0 1497 187 25 4 chr6 79194081 79194359 -110085195 - MER2 DNA MER2_type -61 284 1 1806 172 31 29 chr6 79194359 79194855 -110084699 - L1M2 LINE L1 -645 5646 5151 4457 193 93 14 chr6 79194856 79195984 -110083570 - L1M2 LINE L1 -1720 4426 3210 318 110 0 41 chr6 79196045 79196118 -110083436 + (TA)n Simple_repeat Simple_repeat 1 70 0 257 133 0 0 chr6 79196120 79196165 -110083389 + LTR66 LTR ERVL 394 438 -172 193 130 0 74 chr6 79196166 79196179 -110083375 + (TA)n Simple_repeat Simple_repeat 2 14 -37 2171 119 0 0 chr6 79196179 79196482 -110083072 - AluSg SINE Alu -7 303 1 193 130 0 74 chr6 79196482 79196522 -110083032 + (TA)n Simple_repeat Simple_repeat 14 51 0 2568 148 14 7 chr6 79196539 79196964 -110082590 - MSTA LTR MaLR 0 428 1 1365 196 34 10 chr6 79196964 79196983 -110082571 - L1MA3 LINE L1 -11 6294 6277 219 69 0 0 chr6 79196983 79197012 -110082542 + (TA)n Simple_repeat Simple_repeat 2 30 0 1365 196 34 10 chr6 79197012 79197283 -110082271 - L1MA3 LINE L1 -28 6277 5997 387 315 158 0 chr6 79197321 79197467 -110082087 - MIR SINE MIR -89 173 5 191 347 82 68 chr6 79197449 79197596 -110081958 - L2 LINE L2 -24 3248 3100 * 1370 205 22 130 chr6 79198305 79198857 -110080697 + MLT1D LTR MaLR 7 498 -7 49 0 0 0 chr6 79199892 79199941 -110079613 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr6 79199970 79199991 -110079563 + AT_rich Low_complexity Low_complexity 1 21 0 243 298 149 11 chr6 79200887 79201075 -110078479 + L1MC/D LINE L1 5380 5593 -2402 21 0 0 0 chr6 79201769 79201790 -110077764 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr6 79202277 79202309 -110077245 + AT_rich Low_complexity Low_complexity 1 32 0 1878 130 56 0 chr6 79202967 79203252 -110076302 - AluSx SINE Alu -11 301 1 541 225 23 6 chr6 79203598 79203771 -110075783 + CT-rich Low_complexity Low_complexity 3 178 0 308 77 19 39 chr6 79203771 79203823 -110075731 + (TTTC)n Simple_repeat Simple_repeat 4 54 0 24 53 0 0 chr6 79204639 79204677 -110074877 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr6 79205123 79205146 -110074408 + (CTG)n Simple_repeat Simple_repeat 1 23 0 * 201 147 0 0 chr6 79205144 79205178 -110074376 + (ATG)n Simple_repeat Simple_repeat 2 35 0 181 341 0 49 chr6 79205565 79205647 -110073907 + MIR SINE MIR 110 187 -75 282 121 0 91 chr6 79206147 79206213 -110073341 - MER1B DNA MER1_type -17 316 257 850 143 77 0 chr6 79206245 79206413 -110073141 - MER1B DNA MER1_type -116 181 1 783 246 31 11 chr6 79206413 79206602 -110072952 + LTR16A1 LTR ERVL 265 457 0 5139 170 36 12 chr6 79207281 79208668 -110070886 - L1MA4 LINE L1 -6 6294 4882 11599 244 31 33 chr6 79209795 79213202 -110066352 + L1PA16 LINE L1 777 4189 -2014 1912 115 39 4 chr6 79213202 79213481 -110066073 - AluSc SINE Alu -20 289 1 11599 244 31 33 chr6 79213481 79213655 -110065899 + L1PA16 LINE L1 4189 4362 -1841 360 0 0 0 chr6 79213655 79213695 -110065859 + (CA)n Simple_repeat Simple_repeat 2 41 0 11599 244 31 33 chr6 79213695 79214566 -110064988 + L1PA16 LINE L1 4362 5340 -863 3840 175 17 13 chr6 79214575 79215262 -110064292 + L1PA16 LINE L1 5504 6187 -36 207 0 0 0 chr6 79215262 79215285 -110064269 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 1636 194 46 0 chr6 79215285 79215636 -110063918 + L1MC1 LINE L1 5966 6332 -1 3840 175 17 13 chr6 79215636 79215656 -110063898 + L1PA16 LINE L1 6186 6215 -8 1722 164 19 54 chr6 79215864 79216235 -110063319 - MER46B DNA MER2_type -3 233 1 201 204 231 0 chr6 79216501 79216609 -110062945 - MIR SINE MIR -26 236 104 598 211 18 0 chr6 79217052 79217166 -110062388 - FLAM_A SINE Alu -17 125 10 211 231 0 19 chr6 79219100 79219152 -110060402 + T-rich Low_complexity Low_complexity 2 52 0 26 30 0 0 chr6 79219731 79219764 -110059790 + AT_rich Low_complexity Low_complexity 1 33 0 314 348 43 7 chr6 79220012 79220150 -110059404 - MER91A DNA MER1_type -43 153 11 211 298 75 53 chr6 79221119 79221213 -110058341 + L2 LINE L2 3169 3264 -8 368 53 13 40 chr6 79221454 79221529 -110058025 + (TA)n Simple_repeat Simple_repeat 1 73 0 581 104 74 6 chr6 79221564 79221727 -110057827 + (TA)n Simple_repeat Simple_repeat 2 175 0 22 35 0 0 chr6 79223902 79223931 -110055623 + AT_rich Low_complexity Low_complexity 1 29 0 234 329 0 0 chr6 79224590 79224660 -110054894 + MLT1K LTR MaLR 180 249 -339 1382 216 17 3 chr6 79224660 79224951 -110054603 - AluJo SINE Alu -17 295 1 363 317 81 27 chr6 79225020 79225241 -110054313 + MLT1K LTR MaLR 348 580 -8 30 0 0 0 chr6 79225255 79225285 -110054269 + AT_rich Low_complexity Low_complexity 1 30 0 282 356 9 17 chr6 79225435 79225550 -110054004 + MIR SINE MIR 5 118 -144 208 143 0 0 chr6 79225867 79225902 -110053652 + (TTA)n Simple_repeat Simple_repeat 2 36 0 13646 179 26 15 chr6 79226959 79229335 -110050219 - L1 LINE L1 -888 6677 4238 6644 76 9 0 chr6 79229335 79230726 -110048828 - L1PA7 LINE L1 -3 6151 4757 13646 179 26 15 chr6 79230726 79232349 -110047205 - L1 LINE L1 -3327 4238 2634 401 380 82 34 chr6 79232765 79233389 -110046165 - L2 LINE L2 -480 2834 2181 2265 108 0 0 chr6 79233992 79234288 -110045266 - AluSg SINE Alu -14 296 1 2058 141 45 33 chr6 79234535 79234954 -110044600 - L1MA7 LINE L1 0 6291 5868 377 279 45 146 chr6 79234957 79235355 -110044199 - L1ME4a LINE L1 -240 5881 5524 235 312 40 32 chr6 79235583 79235708 -110043846 + L2 LINE L2 1824 1949 -1365 2511 106 106 39 chr6 79236122 79236319 -110043235 + LTR22B LTR ERVK 1 183 -309 2092 101 3 3 chr6 79236319 79236616 -110042938 - AluY SINE Alu -14 297 1 2511 106 106 39 chr6 79236616 79236879 -110042675 + LTR22B LTR ERVK 183 492 0 291 49 24 0 chr6 79237396 79237437 -110042117 - MADE1 DNA Mariner -2 78 37 1734 212 73 18 chr6 79239204 79239642 -110039912 - MLT1C LTR MaLR 0 467 6 21 0 0 0 chr6 79240108 79240129 -110039425 + AT_rich Low_complexity Low_complexity 1 21 0 975 308 113 29 chr6 79241115 79241653 -110037901 - L2 LINE L2 -2 3311 2734 279 297 60 33 chr6 79241662 79241844 -110037710 - L1ME1 LINE L1 -92 6074 5888 1014 202 159 58 chr6 79241850 79242177 -110037377 + MLT1A1 LTR MaLR 2 361 -4 628 250 6 6 chr6 79242192 79242364 -110037190 - L1ME1 LINE L1 -278 5888 5717 2187 215 30 21 chr6 79242493 79243061 -110036493 - L1MC3 LINE L1 -16 7769 7197 993 204 129 5 chr6 79243069 79243401 -110036153 - L1ME1 LINE L1 -563 5601 5218 * 10431 86 9 3 chr6 79243394 79244863 -110034691 - L1PA7 LINE L1 -1221 4925 3448 6545 75 6 1 chr6 79244864 79246074 -110033480 + L1PA7 LINE L1 4938 6151 -3 273 146 18 0 chr6 79246079 79246141 -110033413 - L1P LINE L1 -2421 3725 3663 * 682 256 130 35 chr6 79246108 79246601 -110032953 - L1ME1 LINE L1 -921 5225 4686 922 269 84 36 chr6 79246601 79246794 -110032760 - L1ME1 LINE L1 -1814 4332 4150 2168 92 9 31 chr6 79246794 79247111 -110032443 - AluY SINE Alu -1 310 1 922 269 84 36 chr6 79247111 79247415 -110032139 - L1ME1 LINE L1 -1996 4150 3811 1529 65 32 9 chr6 79248128 79248344 -110031210 - pTR5 LTR ERV1 -2046 392 172 363 248 10 0 chr6 79248347 79248448 -110031106 - LTR30 LTR ERV1 -80 642 541 3047 130 75 37 chr6 79248449 79249232 -110030322 - pTR5 LTR ERV1 -417 2021 743 2799 3 0 0 chr6 79249925 79250231 -110029323 + AluYa5 SINE Alu 1 306 -5 11965 173 21 6 chr6 79252624 79254671 -110024883 - L1M1 LINE L1 -532 5770 3665 180 0 0 0 chr6 79254671 79254691 -110024863 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 11965 173 21 6 chr6 79254691 79255448 -110024106 - L1M1 LINE L1 -2637 3665 2921 21 0 0 0 chr6 79255454 79255475 -110024079 + AT_rich Low_complexity Low_complexity 1 21 0 2034 169 8 8 chr6 79255626 79255981 -110023573 + MLT2D LTR ERVL 3 357 -57 180 0 0 0 chr6 79255981 79256001 -110023553 + (TC)n Simple_repeat Simple_repeat 1 20 0 189 224 0 0 chr6 79256006 79256064 -110023490 + (TG)n Simple_repeat Simple_repeat 2 59 0 255 310 11 0 chr6 79256264 79256351 -110023203 - MIR SINE MIR -71 191 104 183 344 55 49 chr6 79257583 79257746 -110021808 - L2 LINE L2 -240 3032 2869 2155 101 3 3 chr6 79259067 79259373 -110020181 + AluSc SINE Alu 1 306 -3 198 360 96 16 chr6 79259599 79259724 -110019830 + L2 LINE L2 3136 3270 -2 1513 166 4 4 chr6 79260463 79260716 -110018838 - AluSg SINE Alu 0 310 58 551 135 0 11 chr6 79260723 79260812 -110018742 - AluSq/x SINE Alu -174 139 52 328 155 0 17 chr6 79261094 79261152 -110018402 + AluJ/FLAM SINE Alu 1 57 -245 201 74 0 0 chr6 79261161 79261188 -110018366 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 186 171 0 0 chr6 79261788 79261829 -110017725 + (TAA)n Simple_repeat Simple_repeat 1 41 0 585 224 96 99 chr6 79262143 79262517 -110017037 - MLT1J2 LTR MaLR 0 450 34 1483 193 89 6 chr6 79262844 79263181 -110016373 + MLT1A1 LTR MaLR 1 365 0 1679 209 76 12 chr6 79263861 79264267 -110015287 - MSTB1 LTR MaLR 0 432 1 186 43 0 0 chr6 79264273 79264296 -110015258 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1099 216 0 0 chr6 79264328 79264536 -110015018 - AluJo SINE Alu -104 208 1 2164 112 0 31 chr6 79265718 79266041 -110013513 - AluSq SINE Alu 0 313 1 35 0 0 0 chr6 79266055 79266090 -110013464 + AT_rich Low_complexity Low_complexity 1 35 0 397 257 136 42 chr6 79266170 79266435 -110013119 + L1ME4a LINE L1 5618 5907 -214 300 222 182 0 chr6 79266450 79266549 -110013005 + L1ME4a LINE L1 6001 6117 -4 314 275 33 11 chr6 79266626 79266717 -110012837 - L2 LINE L2 -523 2791 2699 354 259 39 116 chr6 79266787 79267019 -110012535 - MER102a DNA MER1_type -1 329 116 180 163 54 87 chr6 79267562 79267654 -110011900 + L3b LINE CR1 1298 1386 -197 22 0 0 0 chr6 79267745 79267767 -110011787 + AT_rich Low_complexity Low_complexity 1 22 0 314 235 97 56 chr6 79268261 79268457 -110011097 + HAL1 LINE L1 998 1201 -1306 6063 143 26 7 chr6 79268547 79268588 -110010966 - HSMAR2 DNA Mariner -13 1289 1250 1844 68 0 64 chr6 79268588 79268853 -110010701 + AluSg1 SINE Alu 36 283 -26 6063 143 26 7 chr6 79268853 79269830 -110009724 - HSMAR2 DNA Mariner -52 1250 251 253 259 15 23 chr6 79269976 79270107 -110009447 + (TA)n Simple_repeat Simple_repeat 2 131 0 970 138 7 0 chr6 79270288 79270440 -110009114 + HSMAR2 DNA Mariner 6 158 -1144 222 37 0 0 chr6 79270583 79270610 -110008944 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 187 268 0 0 chr6 79270616 79270657 -110008897 - L2 LINE L2 -10 3262 3222 238 311 14 0 chr6 79270953 79271027 -110008527 - MIR SINE MIR -97 165 91 359 293 134 6 chr6 79271110 79271267 -110008287 - MIR3 SINE MIR -30 178 2 1149 273 13 10 chr6 79271433 79271737 -110007817 - MER69 DNA AcHobo -920 306 2 329 308 155 32 chr6 79272072 79272413 -110007141 - LTR33 LTR ERVL -121 400 18 23 0 0 0 chr6 79272496 79272519 -110007035 + AT_rich Low_complexity Low_complexity 1 23 0 224 109 31 47 chr6 79272579 79272643 -110006911 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 250 248 157 89 chr6 79273550 79273718 -110005836 + MIR SINE MIR 20 196 -66 201 74 0 0 chr6 79274799 79274826 -110004728 + (TA)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chr6 79275082 79275111 -110004443 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 79275686 79275710 -110003844 + AT_rich Low_complexity Low_complexity 1 24 0 213 200 147 27 chr6 79275710 79275785 -110003769 + MIR SINE MIR 124 207 -55 229 204 71 0 chr6 79275785 79275883 -110003671 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 29 0 0 0 chr6 79275919 79275948 -110003606 + AT_rich Low_complexity Low_complexity 1 29 0 760 176 7 0 chr6 79277997 79278133 -110001421 + MER3 DNA MER1_type 73 209 0 25 83 0 0 chr6 79279549 79279609 -109999945 + AT_rich Low_complexity Low_complexity 1 60 0 290 342 72 13 chr6 79280790 79280942 -109998612 + MIR SINE MIR 47 207 -55 233 256 43 0 chr6 79280942 79281059 -109998495 + (TAGA)n Simple_repeat Simple_repeat 2 123 0 24 0 0 0 chr6 79281076 79281100 -109998454 + AT_rich Low_complexity Low_complexity 1 24 0 223 216 54 0 chr6 79281441 79281515 -109998039 + T-rich Low_complexity Low_complexity 1 78 0 185 323 10 50 chr6 79281822 79281921 -109997633 + MER5B DNA MER1_type 73 167 -11 34 55 0 0 chr6 79281974 79282029 -109997525 + AT_rich Low_complexity Low_complexity 1 55 0 2388 41 0 0 chr6 79283647 79283938 -109995616 + L1PA5 LINE L1 5862 6152 -2 25 0 0 0 chr6 79284054 79284079 -109995475 + AT_rich Low_complexity Low_complexity 1 25 0 442 251 64 43 chr6 79284278 79284465 -109995089 - MER117 DNA MER1_type -2 195 5 2146 174 28 46 chr6 79284959 79285395 -109994159 - MSTA LTR MaLR 0 428 1 293 211 0 0 chr6 79285741 79285798 -109993756 + LTR33A LTR ERVL 467 523 0 2286 102 0 0 chr6 79286575 79286879 -109992675 - AluSx SINE Alu -8 304 1 23 0 0 0 chr6 79287884 79287907 -109991647 + AT_rich Low_complexity Low_complexity 1 23 0 347 279 41 8 chr6 79288186 79288308 -109991246 + L2 LINE L2 3169 3294 -19 379 259 35 0 chr6 79288536 79288652 -109990902 - LTR33 LTR ERVL -23 498 379 1628 196 41 66 chr6 79288663 79289130 -109990424 - MER31B LTR ERV1 -11 650 1 775 251 109 0 chr6 79289477 79289688 -109989866 + MIR SINE MIR 22 255 -7 2232 100 0 0 chr6 79289786 79290087 -109989467 + AluY SINE Alu 1 301 -10 689 231 28 79 chr6 79291095 79291385 -109988169 + ORSL DNA AcHobo 1 275 0 258 282 82 0 chr6 79292998 79293083 -109986471 - MIR SINE MIR -158 104 13 23 0 0 0 chr6 79295063 79295086 -109984468 + AT_rich Low_complexity Low_complexity 1 23 0 33 25 0 0 chr6 79295844 79295884 -109983670 + AT_rich Low_complexity Low_complexity 1 40 0 21 82 0 0 chr6 79296888 79296937 -109982617 + AT_rich Low_complexity Low_complexity 1 49 0 318 296 53 109 chr6 79297723 79297970 -109981584 + MIR SINE MIR 3 235 -27 195 364 56 20 chr6 79298301 79298496 -109981058 - MIR SINE MIR -14 248 47 263 368 11 21 chr6 79299014 79299109 -109980445 - MIR SINE MIR -77 131 38 605 229 0 16 chr6 79299528 79299650 -109979904 - MER63 DNA MER1_type -276 786 41 42 57 0 0 chr6 79300624 79300694 -109978860 + AT_rich Low_complexity Low_complexity 1 70 0 372 328 61 17 chr6 79301158 79301338 -109978216 - MER5A DNA MER1_type -1 188 1 244 409 16 5 chr6 79301419 79301605 -109977949 + L2 LINE L2 2862 3049 -223 1086 214 37 0 chr6 79301743 79301958 -109977596 + MER58A DNA MER1_type 2 224 0 720 238 14 42 chr6 79302173 79302387 -109977167 + MER3 DNA MER1_type 2 209 0 180 152 0 0 chr6 79302634 79302667 -109976887 + T-rich Low_complexity Low_complexity 2 34 0 5332 38 0 0 chr6 79303946 79304580 -109974974 + L1PA5 LINE L1 5506 6139 -15 264 30 0 0 chr6 79304580 79304613 -109974941 + (TA)n Simple_repeat Simple_repeat 1 33 0 350 41 0 0 chr6 79305144 79305193 -109974361 - L1PA7 LINE L1 -261 5911 5863 1841 65 0 16 chr6 79305193 79305440 -109974114 + L1PA7 LINE L1 5904 6146 -8 213 39 0 0 chr6 79305831 79305857 -109973697 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 658 250 62 29 chr6 79306767 79306975 -109972579 + MER20 DNA MER1_type 1 215 -4 368 370 157 17 chr6 79308181 79308935 -109970619 - L2 LINE L2 -497 2817 1959 384 336 71 21 chr6 79309219 79309382 -109970172 - MIR3 SINE MIR -31 177 6 330 238 143 48 chr6 79309779 79309926 -109969628 + MIR3 SINE MIR 16 176 -32 232 147 0 0 chr6 79310031 79310065 -109969489 + Charlie8 DNA MER1_type 2384 2417 0 219 320 13 0 chr6 79311523 79311601 -109967953 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 643 292 20 15 chr6 79311603 79311798 -109967756 - MIR SINE MIR -66 196 1 266 349 47 0 chr6 79312848 79312934 -109966620 - L2 LINE L2 -41 3231 3142 21 0 0 0 chr6 79313136 79313157 -109966397 + AT_rich Low_complexity Low_complexity 1 21 0 203 255 0 0 chr6 79314838 79314889 -109964665 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 977 105 52 0 chr6 79315133 79315286 -109964268 - L1PA13 LINE L1 -6 6157 5997 537 99 0 25 chr6 79315286 79315367 -109964187 + L1PA13 LINE L1 5903 5981 -182 218 316 31 31 chr6 79315697 79315795 -109963759 - MER5B DNA MER1_type -79 99 2 681 226 57 11 chr6 79315800 79315977 -109963577 - MER5A DNA MER1_type -3 186 2 2117 207 32 48 chr6 79316011 79316576 -109962978 + L1PA16 LINE L1 5576 6131 -35 1058 109 36 16 chr6 79316568 79316760 -109962794 + L1MA1 LINE L1 5957 6152 -150 * 981 102 0 36 chr6 79316805 79316971 -109962583 + L1MA1 LINE L1 6143 6302 0 22 35 0 0 chr6 79318057 79318086 -109961468 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 79318195 79318223 -109961331 + AT_rich Low_complexity Low_complexity 1 28 0 1313 185 34 55 chr6 79318982 79319274 -109960280 - AluJo SINE Alu -26 286 1 27 29 0 0 chr6 79319727 79319761 -109959793 + AT_rich Low_complexity Low_complexity 1 34 0 262 213 76 0 chr6 79320201 79320344 -109959210 - L1ME LINE L1 -647 5519 5352 3536 286 97 45 chr6 79320751 79322663 -109956891 - L2 LINE L2 -11 3302 1288 21 0 0 0 chr6 79322957 79322978 -109956576 + AT_rich Low_complexity Low_complexity 1 21 0 731 171 8 0 chr6 79323235 79323364 -109956190 + FLAM_C SINE Alu 3 132 -1 847 229 39 39 chr6 79324112 79324320 -109955234 - MIR SINE MIR -21 241 34 1631 150 3 53 chr6 79324320 79324640 -109954914 - AluJb SINE Alu -5 307 4 226 222 19 0 chr6 79324589 79324643 -109954911 - AluJ/monomer SINE Alu -248 55 1 * 847 229 39 39 chr6 79324640 79324662 -109954892 - MIR SINE MIR -227 35 11 263 305 39 39 chr6 79325534 79325662 -109953892 + MIR SINE MIR 125 252 -10 29 28 0 0 chr6 79325818 79325854 -109953700 + AT_rich Low_complexity Low_complexity 1 36 0 346 282 79 44 chr6 79325881 79326197 -109953357 - HAL1 LINE L1 -1020 1487 1161 22 80 0 0 chr6 79326917 79326967 -109952587 + AT_rich Low_complexity Low_complexity 1 50 0 4983 76 1 0 chr6 79327204 79327852 -109951702 + L1PA7 LINE L1 5502 6150 -4 2881 148 69 6 chr6 79328022 79328543 -109951011 + L1MB2 LINE L1 5617 6170 -1 298 269 15 8 chr6 79328587 79328717 -109950837 + (TA)n Simple_repeat Simple_repeat 2 132 0 408 326 126 56 chr6 79328759 79329364 -109950190 - L1MC4a LINE L1 -1895 5913 5267 23 54 0 0 chr6 79329387 79329424 -109950130 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 79329735 79329758 -109949796 + AT_rich Low_complexity Low_complexity 1 23 0 2620 77 8 3 chr6 79330769 79331122 -109948432 - THE1A LTR MaLR 0 355 1 8349 107 2 0 chr6 79331122 79332268 -109947286 - THE1A-int LTR MaLR 0 1580 433 912 99 0 8 chr6 79332268 79332365 -109947189 + MLT2A1 LTR ERVL 307 404 -40 351 0 0 0 chr6 79332365 79332404 -109947150 + (TG)n Simple_repeat Simple_repeat 2 40 0 912 99 0 8 chr6 79332404 79332437 -109947117 + MLT2A1 LTR ERVL 404 436 -8 22 0 0 0 chr6 79333500 79333522 -109946032 + AT_rich Low_complexity Low_complexity 1 22 0 2045 130 13 0 chr6 79335229 79335529 -109944025 - AluSq SINE Alu -9 304 1 214 353 43 9 chr6 79340759 79340875 -109938679 + L2 LINE L2 1833 1952 -1362 381 320 105 0 chr6 79341019 79341191 -109938363 + MIR SINE MIR 59 248 -14 196 219 14 14 chr6 79341228 79341301 -109938253 + (CACCAT)n Simple_repeat Simple_repeat 1 73 0 183 129 0 0 chr6 79343203 79343234 -109936320 + (CA)n Simple_repeat Simple_repeat 2 32 0 226 314 8 40 chr6 79345109 79345233 -109934321 + CT-rich Low_complexity Low_complexity 3 122 0 2108 119 3 0 chr6 79346053 79346346 -109933208 - AluSx SINE Alu -18 294 1 1712 164 4 0 chr6 79346750 79347031 -109932523 + AluJb SINE Alu 4 285 -27 22 35 0 0 chr6 79347632 79347661 -109931893 + AT_rich Low_complexity Low_complexity 1 29 0 242 287 113 68 chr6 79347701 79348461 -109931093 - L1M4 LINE L1 -1535 4611 3818 360 0 0 0 chr6 79348494 79348534 -109931020 + (CA)n Simple_repeat Simple_repeat 2 41 0 386 285 72 89 chr6 79348825 79349309 -109930245 - L1M4 LINE L1 -2701 3445 2970 11326 97 6 1 chr6 79350251 79352640 -109926914 + L1PA7 LINE L1 3744 6137 -17 22 70 0 0 chr6 79352744 79352787 -109926767 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr6 79354082 79354105 -109925449 + AT_rich Low_complexity Low_complexity 1 23 0 294 143 0 0 chr6 79354342 79354391 -109925163 + (CA)n Simple_repeat Simple_repeat 2 50 0 688 279 51 43 chr6 79354477 79354753 -109924801 - L2 LINE L2 0 3313 3036 1639 162 3 57 chr6 79355692 79355811 -109923743 + AluJb SINE Alu 1 125 -187 285 51 0 0 chr6 79355811 79355850 -109923704 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 366 23 0 0 chr6 79355851 79355894 -109923660 + (TA)n Simple_repeat Simple_repeat 2 44 0 1639 162 3 57 chr6 79355894 79356086 -109923468 + AluJb SINE Alu 124 297 -15 344 337 79 7 chr6 79356109 79356255 -109923299 - MIR SINE MIR -58 150 38 384 316 129 29 chr6 79356454 79356732 -109922822 - L2 LINE L2 0 3313 3008 24 53 0 0 chr6 79357238 79357276 -109922278 + AT_rich Low_complexity Low_complexity 1 38 0 271 241 0 0 chr6 79358513 79358571 -109920983 + MIR SINE MIR 180 237 -25 181 392 40 32 chr6 79359311 79359436 -109920118 + L3b LINE CR1 1457 1582 -1 180 0 0 0 chr6 79360625 79360645 -109918909 + (A)n Simple_repeat Simple_repeat 1 20 0 205 300 0 17 chr6 79362043 79362103 -109917451 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 279 0 0 0 chr6 79362187 79362218 -109917336 + (TG)n Simple_repeat Simple_repeat 2 32 0 181 188 21 42 chr6 79362655 79362703 -109916851 - MIR SINE MIR -136 126 80 940 114 60 22 chr6 79363651 79363835 -109915719 - L1MD3 LINE L1 -10 7985 7795 377 263 63 63 chr6 79364564 79364754 -109914800 - LTR33A LTR ERVL -51 472 283 7526 25 0 6 chr6 79364924 79365852 -109913702 - L1PA4 LINE L1 0 6155 5233 552 306 122 9 chr6 79366010 79366239 -109913315 - MIR SINE MIR -6 256 2 303 56 56 0 chr6 79366248 79366302 -109913252 + (TA)n Simple_repeat Simple_repeat 2 58 0 280 280 70 51 chr6 79367065 79367222 -109912332 - MIR SINE MIR -44 218 59 266 29 29 0 chr6 79367259 79367293 -109912261 - U2 snRNA snRNA -153 35 1 34764 37 2 0 chr6 79368115 79373125 -109906429 - L1PA4 LINE L1 -3 6152 1135 5384 50 44 8 chr6 79373167 79373871 -109905683 + L1P LINE L1 385 1113 -5033 694 157 17 0 chr6 79373908 79374023 -109905531 + FLAM_A SINE Alu 18 134 -8 23 86 0 0 chr6 79374711 79374769 -109904785 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 54 chr6 79376483 79376498 -109903056 + AT_rich Low_complexity Low_complexity 1 15 -20 1932 150 3 0 chr6 79376498 79376784 -109902770 - AluSx SINE Alu -24 288 2 22 0 0 54 chr6 79376784 79376805 -109902749 + AT_rich Low_complexity Low_complexity 15 35 0 216 163 20 20 chr6 79377261 79377310 -109902244 + (TA)n Simple_repeat Simple_repeat 2 50 0 360 207 296 15 chr6 79377447 79377582 -109901972 - MIR SINE MIR -2 260 88 26 30 0 0 chr6 79377921 79377954 -109901600 + AT_rich Low_complexity Low_complexity 1 33 0 206 356 37 37 chr6 79379185 79379348 -109900206 - L3 LINE CR1 -153 1424 1262 245 343 30 8 chr6 79380093 79380227 -109899327 - L2 LINE L2 0 3272 3136 182 271 10 94 chr6 79380458 79380554 -109899000 - MIR SINE MIR -72 190 103 223 300 54 151 chr6 79381188 79381410 -109898144 - L2 LINE L2 -1 3271 3094 1695 88 4 0 chr6 79381410 79381649 -109897905 + L1PA7 LINE L1 5912 6151 -3 223 300 54 151 chr6 79381649 79381776 -109897778 - L2 LINE L2 -178 3094 2956 21 36 0 0 chr6 79382118 79382146 -109897408 + AT_rich Low_complexity Low_complexity 1 28 0 185 269 151 11 chr6 79382370 79382463 -109897091 - L2 LINE L2 0 3313 3208 1319 315 161 23 chr6 79382466 79383664 -109895890 - L2 LINE L2 -13 3300 1930 2193 118 0 3 chr6 79384362 79384675 -109894879 + AluSq SINE Alu 1 312 -1 273 360 22 15 chr6 79384974 79385110 -109894444 - MIR3 SINE MIR -51 157 21 363 44 0 0 chr6 79385137 79385182 -109894372 + (TG)n Simple_repeat Simple_repeat 2 46 0 251 357 58 54 chr6 79386518 79386947 -109892607 + L2 LINE L2 1598 2028 -1286 327 354 15 8 chr6 79387156 79387286 -109892268 + L2 LINE L2 2899 3029 -243 28 29 0 0 chr6 79387714 79387749 -109891805 + AT_rich Low_complexity Low_complexity 1 35 0 1465 189 6 41 chr6 79387879 79388197 -109891357 - AluJo SINE Alu -5 307 1 238 299 0 0 chr6 79389472 79389539 -109890015 - L1ME4a LINE L1 -76 6045 5979 30 59 0 0 chr6 79389573 79389624 -109889930 + AT_rich Low_complexity Low_complexity 1 51 0 307 259 98 9 chr6 79389875 79389987 -109889567 - L1ME4a LINE L1 -470 5651 5530 2320 64 6 16 chr6 79390182 79390496 -109889058 - AluY SINE Alu 0 311 1 22 0 0 0 chr6 79391065 79391087 -109888467 + AT_rich Low_complexity Low_complexity 1 22 0 241 297 27 0 chr6 79391670 79391744 -109887810 + GA-rich Low_complexity Low_complexity 1 76 0 297 381 16 8 chr6 79391839 79391965 -109887589 + MER5A DNA MER1_type 56 182 -7 280 343 75 0 chr6 79393450 79393584 -109885970 + MIR3 SINE MIR 34 177 -31 1965 154 0 3 chr6 79394428 79394726 -109884828 - AluSx SINE Alu -15 297 1 2317 54 0 0 chr6 79395631 79395925 -109883629 - L1PA7 LINE L1 0 6154 5861 2583 93 3 0 chr6 79395956 79396310 -109883244 + THE1A LTR MaLR 1 355 0 7320 30 13 0 chr6 79396532 79397595 -109881959 - L1PA4 LINE L1 -20 6135 5064 4217 35 0 2 chr6 79397592 79398109 -109881445 + L1P LINE L1 3639 4154 -1992 * 345 47 0 0 chr6 79398560 79398603 -109880951 + (TG)n Simple_repeat Simple_repeat 2 44 0 25 75 0 0 chr6 79398711 79398764 -109880790 + AT_rich Low_complexity Low_complexity 1 53 0 28 48 0 0 chr6 79399082 79399124 -109880430 + AT_rich Low_complexity Low_complexity 1 42 0 250 235 54 134 chr6 79399999 79400148 -109879406 + L2 LINE L2 3133 3269 -3 492 18 0 0 chr6 79400261 79400318 -109879236 + (TA)n Simple_repeat Simple_repeat 1 57 0 203 295 188 18 chr6 79400572 79400684 -109878870 + MIR SINE MIR 132 262 0 200 237 0 0 chr6 79401315 79401353 -109878201 + L2 LINE L2 3210 3247 -25 23 0 0 0 chr6 79403193 79403216 -109876338 + AT_rich Low_complexity Low_complexity 1 23 0 2198 153 13 23 chr6 79403300 79403698 -109875856 - L1MA3 LINE L1 -2 6303 5910 254 317 62 37 chr6 79403732 79403893 -109875661 - L2 LINE L2 -6 3307 3143 660 275 52 26 chr6 79404841 79405070 -109874484 - MIR SINE MIR -27 235 1 250 276 141 24 chr6 79405897 79406067 -109873487 + L1ME LINE L1 5629 5818 -303 254 206 15 15 chr6 79406331 79406399 -109873155 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 423 211 103 49 chr6 79407021 79407206 -109872348 - L1MEd LINE L1 -4882 1237 1043 253 197 30 0 chr6 79407347 79407413 -109872141 + (TA)n Simple_repeat Simple_repeat 1 68 0 395 158 76 23 chr6 79407452 79407623 -109871931 + (TA)n Simple_repeat Simple_repeat 1 180 0 558 285 48 45 chr6 79407705 79407818 -109871736 - L1MEd LINE L1 -5219 900 789 1830 125 14 20 chr6 79407818 79408113 -109871441 - AluSx SINE Alu -19 293 1 558 285 48 45 chr6 79408113 79408336 -109871218 - L1MEd LINE L1 -5330 789 563 2181 119 16 47 chr6 79408497 79408884 -109870670 + THE1C LTR MaLR 1 375 0 3294 284 147 11 chr6 79408998 79410587 -109868967 - L2 LINE L2 -1 3312 1514 2215 117 0 7 chr6 79412048 79412356 -109867198 - AluSx SINE Alu -4 308 3 21 0 0 0 chr6 79412553 79412574 -109866980 + AT_rich Low_complexity Low_complexity 1 21 0 374 355 70 54 chr6 79413945 79414754 -109864800 - L2 LINE L2 -586 2728 1907 25 31 0 0 chr6 79416166 79416198 -109863356 + AT_rich Low_complexity Low_complexity 1 32 0 23 86 0 0 chr6 79416227 79416285 -109863269 + AT_rich Low_complexity Low_complexity 1 58 0 408 285 31 23 chr6 79416877 79417007 -109862547 + L2 LINE L2 3182 3312 -1 21 57 0 0 chr6 79417404 79417439 -109862115 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr6 79417961 79417996 -109861558 + AT_rich Low_complexity Low_complexity 1 35 0 669 193 0 8 chr6 79419663 79419782 -109859772 + FLAM_C SINE Alu 1 118 -25 21 0 0 0 chr6 79420055 79420076 -109859478 + AT_rich Low_complexity Low_complexity 1 21 0 196 396 14 7 chr6 79421617 79421756 -109857798 + MIR SINE MIR 47 186 -76 297 135 0 0 chr6 79421983 79422035 -109857519 + (TC)n Simple_repeat Simple_repeat 2 53 0 306 87 0 0 chr6 79422037 79422083 -109857471 + (CA)n Simple_repeat Simple_repeat 1 46 0 3820 191 62 16 chr6 79422584 79423324 -109856230 + L1MA3 LINE L1 11 784 -6781 907 141 0 39 chr6 79423335 79423491 -109856063 - AluJb SINE Alu 0 312 163 641 144 88 0 chr6 79423499 79423624 -109855930 + L1MA3 LINE L1 1324 1459 -6106 13809 173 32 12 chr6 79423627 79423645 -109855909 + L1MA3 LINE L1 3487 3503 -4221 207 0 0 0 chr6 79423645 79423668 -109855886 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 13809 173 32 12 chr6 79423668 79424715 -109854839 + L1MA3 LINE L1 3503 4528 -3196 2250 148 17 12 chr6 79424715 79425127 -109854427 + L1MA2 LINE L1 5891 6304 0 13809 173 32 12 chr6 79425127 79428219 -109851335 + L1MA3 LINE L1 4528 7724 0 703 213 31 71 chr6 79428232 79428423 -109851131 + MLT1C LTR MaLR 200 397 -70 2572 107 3 0 chr6 79428423 79428777 -109850777 + THE1A LTR MaLR 1 355 0 11216 102 11 1 chr6 79428777 79430341 -109849213 + THE1A-int LTR MaLR 1 1580 0 2458 103 6 3 chr6 79430345 79430695 -109848859 + THE1A LTR MaLR 5 355 0 703 213 31 71 chr6 79430695 79430722 -109848832 + MLT1C LTR MaLR 399 415 -52 245 234 31 0 chr6 79430835 79430899 -109848655 + A-rich Low_complexity Low_complexity 1 66 0 21 95 0 0 chr6 79431055 79431118 -109848436 + AT_rich Low_complexity Low_complexity 1 63 0 291 287 37 0 chr6 79432721 79432829 -109846725 - HAL1b LINE L1 -170 1178 1067 1360 274 75 24 chr6 79432994 79433717 -109845837 - HAL1b LINE L1 -516 832 73 260 200 12 0 chr6 79434171 79434251 -109845303 + CT-rich Low_complexity Low_complexity 2 82 0 486 135 0 21 chr6 79434553 79434649 -109844905 + L1MA5A LINE L1 6201 6294 -3 979 213 33 0 chr6 79437241 79437485 -109842069 + L1MA8 LINE L1 6037 6288 -3 237 33 0 0 chr6 79438371 79438401 -109841153 + (TTTAA)n Simple_repeat Simple_repeat 5 34 0 29 98 0 0 chr6 79438438 79438530 -109841024 + AT_rich Low_complexity Low_complexity 1 92 0 1361 192 3 66 chr6 79438697 79438840 -109840714 + AluJo SINE Alu 5 155 -157 1973 133 57 28 chr6 79438840 79439194 -109840360 + THE1B LTR MaLR 1 364 0 10724 110 19 2 chr6 79439194 79440747 -109838807 + THE1B-int LTR MaLR 1 1580 0 2032 142 31 22 chr6 79440749 79441108 -109838446 + THE1B LTR MaLR 3 364 0 1361 192 3 66 chr6 79441108 79441179 -109838375 + AluJo SINE Alu 155 199 -113 1991 130 17 3 chr6 79441179 79441471 -109838083 + AluSg SINE Alu 1 296 -14 1361 192 3 66 chr6 79441471 79441568 -109837986 + AluJo SINE Alu 199 301 -11 4556 130 88 1 chr6 79441660 79442396 -109837158 - THE1B-int LTR MaLR -780 800 1 2494 121 8 6 chr6 79442396 79442759 -109836795 - THE1B LTR MaLR 0 364 1 1760 179 83 69 chr6 79442785 79443182 -109836372 - Charlie1 DNA MER1_type 0 2761 2371 186 43 0 0 chr6 79443182 79443205 -109836349 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3267 165 12 15 chr6 79443205 79443805 -109835749 - L1PB4 LINE L1 -11 6145 5548 1760 179 83 69 chr6 79443805 79443997 -109835557 - Charlie1 DNA MER1_type -389 2372 2163 251 338 13 0 chr6 79443996 79444073 -109835481 - Charlie1 DNA MER1_type -2683 78 1 * 2196 62 42 3 chr6 79444252 79444541 -109835013 + AluY SINE Alu 5 304 -7 573 234 185 19 chr6 79444689 79444894 -109834660 + MIR SINE MIR 3 241 -21 214 309 121 54 chr6 79445396 79445545 -109834009 - MIR SINE MIR -21 241 83 806 296 123 5 chr6 79445681 79446110 -109833444 - HAL1 LINE L1 -82 2425 1946 36 62 0 0 chr6 79446401 79446465 -109833089 + AT_rich Low_complexity Low_complexity 1 64 0 241 296 177 38 chr6 79447349 79447535 -109832019 + MLT1J LTR MaLR 145 356 -155 22 35 0 0 chr6 79448058 79448087 -109831467 + AT_rich Low_complexity Low_complexity 1 29 0 1541 143 84 42 chr6 79449095 79449451 -109830103 + THE1C LTR MaLR 5 375 0 9387 138 16 31 chr6 79449453 79451055 -109828499 + THE1C-int LTR MaLR 3 1580 0 1511 156 73 34 chr6 79451055 79451413 -109828141 + THE1C LTR MaLR 1 372 -3 336 24 0 0 chr6 79451868 79451909 -109827645 + (TG)n Simple_repeat Simple_repeat 2 42 0 1952 131 0 28 chr6 79452745 79453035 -109826519 - AluSx SINE Alu -30 282 1 906 271 19 12 chr6 79453575 79453833 -109825721 + MIR SINE MIR 1 260 -2 22 0 0 0 chr6 79456835 79456857 -109822697 + AT_rich Low_complexity Low_complexity 1 22 0 973 140 11 0 chr6 79457980 79458158 -109821396 + CT-rich Low_complexity Low_complexity 1 180 0 400 93 27 27 chr6 79458163 79458238 -109821316 + (TCCCC)n Simple_repeat Simple_repeat 5 79 0 35 41 0 0 chr6 79458966 79459015 -109820539 + AT_rich Low_complexity Low_complexity 1 49 0 28 0 0 0 chr6 79459024 79459052 -109820502 + AT_rich Low_complexity Low_complexity 1 28 0 192 333 95 0 chr6 79459069 79459132 -109820422 - L2 LINE L2 -55 3217 3149 21 0 0 0 chr6 79461408 79461429 -109818125 + AT_rich Low_complexity Low_complexity 1 21 0 2173 132 25 27 chr6 79461671 79462036 -109817518 - THE1B LTR MaLR 0 364 1 416 303 98 80 chr6 79462036 79462170 -109817384 - MLT1K LTR MaLR -51 537 407 2349 54 6 38 chr6 79462170 79462484 -109817070 - AluY SINE Alu -7 304 1 416 303 98 80 chr6 79462484 79462686 -109816868 - MLT1K LTR MaLR -181 407 195 21 36 0 0 chr6 79463933 79463961 -109815593 + AT_rich Low_complexity Low_complexity 1 28 0 1563 88 0 5 chr6 79465842 79466071 -109813483 - AluY SINE Alu 0 307 80 3709 129 11 89 chr6 79466071 79466805 -109812749 + LTR12 LTR ERV1 31 714 0 261 361 104 27 chr6 79467148 79467599 -109811955 - L2 LINE L2 -1 3312 2827 271 222 293 47 chr6 79467678 79467890 -109811664 - Charlie2 DNA MER1_type -2518 264 1 825 111 35 96 chr6 79468292 79468491 -109811063 - L1MA7 LINE L1 -5 6286 6100 814 140 34 62 chr6 79468500 79468678 -109810876 + L1MA8 LINE L1 5869 6041 -250 289 274 14 82 chr6 79469608 79469827 -109809727 - L1ME4a LINE L1 -55 6066 5863 25 51 0 0 chr6 79469928 79469967 -109809587 + AT_rich Low_complexity Low_complexity 1 39 0 189 171 0 0 chr6 79470017 79470052 -109809502 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 333 308 73 41 chr6 79470064 79470408 -109809146 - L1ME4a LINE L1 -448 5673 5319 297 0 0 0 chr6 79471499 79471532 -109808022 + (CA)n Simple_repeat Simple_repeat 2 34 0 561 288 116 30 chr6 79471533 79471835 -109807719 - L2 LINE L2 -86 3227 2900 2245 91 10 3 chr6 79472447 79472756 -109806798 - AluY SINE Alu 0 311 1 2077 143 42 25 chr6 79473918 79474276 -109805278 - THE1B LTR MaLR 0 364 1 539 261 167 6 chr6 79474897 79475077 -109804477 + MER3 DNA MER1_type 1 209 0 487 302 217 9 chr6 79475095 79475630 -109803924 + L2 LINE L2 2648 3306 -7 225 200 0 55 chr6 79476540 79476595 -109802959 + A-rich Low_complexity Low_complexity 2 53 0 25 51 0 0 chr6 79478851 79478890 -109800664 + AT_rich Low_complexity Low_complexity 1 39 0 737 251 20 15 chr6 79480149 79480344 -109799210 + AluJo SINE Alu 117 312 0 249 196 0 0 chr6 79480352 79480408 -109799146 + GA-rich Low_complexity Low_complexity 3 58 0 238 150 38 75 chr6 79480535 79480668 -109798886 + (CACAA)n Simple_repeat Simple_repeat 2 129 0 185 269 151 11 chr6 79481087 79481180 -109798374 - L2 LINE L2 0 3313 3208 1319 315 161 23 chr6 79481183 79482381 -109797173 - L2 LINE L2 -13 3300 1930 533 209 0 8 chr6 79482791 79482925 -109796629 + GA-rich Low_complexity Low_complexity 4 136 0 229 78 98 20 chr6 79482931 79482982 -109796572 - MLT2B2 LTR ERVL -2 518 464 210 83 83 0 chr6 79482990 79483038 -109796516 + (TA)n Simple_repeat Simple_repeat 1 52 0 2426 216 11 8 chr6 79483061 79483529 -109796025 - MLT2B2 LTR ERVL -46 469 1 2859 192 73 5 chr6 79483599 79484219 -109795335 + L1MC3 LINE L1 7114 7775 -10 3304 46 0 2 chr6 79484314 79484727 -109794827 - L1PA2 LINE L1 -2 6153 5742 23 68 0 0 chr6 79484771 79484815 -109794739 + AT_rich Low_complexity Low_complexity 1 44 0 182 306 0 0 chr6 79485069 79485118 -109794436 + L2 LINE L2 3220 3268 -4 2775 238 68 7 chr6 79485368 79486054 -109793500 + ERVL LTR ERVL 3877 4604 -1160 911 246 140 101 chr6 79486069 79486582 -109792972 - MLT1F LTR MaLR 0 542 10 22 0 0 0 chr6 79486970 79486992 -109792562 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 79488538 79488560 -109790994 + AT_rich Low_complexity Low_complexity 1 22 0 1274 188 71 14 chr6 79488748 79489030 -109790524 + AluJo SINE Alu 1 298 -14 639 163 0 0 chr6 79489054 79489177 -109790377 + GA-rich Low_complexity Low_complexity 4 126 0 623 101 59 236 chr6 79489208 79489445 -109790109 - MER7A DNA MER2_type -153 193 1 290 326 42 0 chr6 79489616 79489760 -109789794 - L1MC4a LINE L1 -1930 5878 5729 199 369 75 21 chr6 79490782 79490969 -109788585 + L2 LINE L2 1705 1901 -1413 304 352 52 5 chr6 79491510 79491703 -109787851 - L1MC4a LINE L1 -471 5650 5449 248 266 237 14 chr6 79491989 79492128 -109787426 + MIR SINE MIR 67 236 -26 22 56 0 0 chr6 79492214 79492250 -109787304 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 79492918 79492940 -109786614 + AT_rich Low_complexity Low_complexity 1 22 0 7277 35 2 0 chr6 79494814 79496076 -109783478 - L1PA4 LINE L1 -385 5770 4506 3066 29 11 0 chr6 79496076 79496452 -109783102 + L1PA4 LINE L1 5776 6155 0 3085 43 0 3 chr6 79497366 79497784 -109781770 - L1PA3 LINE L1 0 6155 5762 15278 48 11 4 chr6 79497784 79499706 -109779848 + L1P LINE L1 192 2127 -4019 430 296 0 0 chr6 79500201 79500316 -109779238 + MIR SINE MIR 53 167 -95 526 351 78 53 chr6 79500409 79500899 -109778655 + L1MEd LINE L1 58 559 -5560 224 200 33 0 chr6 79500983 79501043 -109778511 + A-rich Low_complexity Low_complexity 5 66 0 307 294 87 0 chr6 79501228 79501354 -109778200 + L1MEd LINE L1 904 1040 -5079 413 339 106 59 chr6 79501469 79502237 -109777317 - L2 LINE L2 -54 3259 2451 584 327 95 33 chr6 79502249 79502555 -109776999 - L3 LINE CR1 -61 1516 1192 222 343 203 13 chr6 79502755 79502991 -109776563 - L3 LINE CR1 -418 1159 879 21 0 0 0 chr6 79503949 79503970 -109775584 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr6 79504285 79504332 -109775222 + AT_rich Low_complexity Low_complexity 1 47 0 230 306 154 50 chr6 79504535 79504917 -109774637 - L2 LINE L2 -1137 2177 1756 229 273 128 67 chr6 79505151 79505258 -109774296 + HAL1 LINE L1 1334 1433 -1074 2262 70 20 7 chr6 79505258 79505560 -109773994 + AluY SINE Alu 1 306 -5 229 273 128 67 chr6 79505560 79505734 -109773820 + HAL1 LINE L1 1433 1632 -875 266 276 94 15 chr6 79506192 79506395 -109773159 + L1MEd LINE L1 2119 2337 -3792 36 0 0 0 chr6 79506721 79506757 -109772797 + AT_rich Low_complexity Low_complexity 1 36 0 423 300 0 9 chr6 79507173 79507283 -109772271 + L2 LINE L2 3204 3312 -1 233 250 62 42 chr6 79507646 79507742 -109771812 - MIR3 SINE MIR -17 191 94 27 45 0 45 chr6 79509926 79509993 -109769561 + AT_rich Low_complexity Low_complexity 1 64 0 23 33 0 0 chr6 79510931 79510961 -109768593 + AT_rich Low_complexity Low_complexity 1 30 0 1430 189 0 32 chr6 79513305 79513590 -109765964 + AluJo SINE Alu 1 276 -36 22 35 0 0 chr6 79514961 79514990 -109764564 + AT_rich Low_complexity Low_complexity 1 29 0 31 26 0 0 chr6 79516176 79516214 -109763340 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr6 79517528 79517557 -109761997 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr6 79517859 79517899 -109761655 + AT_rich Low_complexity Low_complexity 1 40 0 33 66 0 0 chr6 79518124 79518185 -109761369 + AT_rich Low_complexity Low_complexity 1 61 0 24 32 0 0 chr6 79518340 79518371 -109761183 + AT_rich Low_complexity Low_complexity 1 31 0 1863 145 3 7 chr6 79518371 79518684 -109760870 + AluSx SINE Alu 1 312 0 284 321 142 12 chr6 79518770 79518932 -109760622 - MIR SINE MIR -60 202 20 292 204 0 0 chr6 79520166 79520220 -109759334 + MER5C DNA MER1_type 3 56 -268 187 184 0 53 chr6 79520381 79520419 -109759135 - MER5C DNA MER1_type -288 36 1 207 0 0 0 chr6 79522287 79522310 -109757244 + (GA)n Simple_repeat Simple_repeat 2 24 0 791 157 38 0 chr6 79522845 79523004 -109756550 + L1MB2 LINE L1 6005 6169 -2 1161 206 45 0 chr6 79523443 79523502 -109756052 - L1MA8 LINE L1 -3 6288 6233 279 0 0 0 chr6 79523502 79523533 -109756021 + (TA)n Simple_repeat Simple_repeat 2 32 0 1161 206 45 0 chr6 79523533 79523740 -109755814 - L1MA8 LINE L1 -58 6233 6010 992 47 78 0 chr6 79524291 79524419 -109755135 + MER85 DNA T2_type 1 138 -1 1155 170 9 27 chr6 79525321 79525544 -109754010 - MER20 DNA MER1_type 0 219 1 189 0 0 0 chr6 79525757 79525778 -109753776 + (T)n Simple_repeat Simple_repeat 1 21 0 2063 93 35 0 chr6 79525828 79526118 -109753436 + AluSx SINE Alu 1 300 -12 308 252 16 8 chr6 79527041 79527164 -109752390 + (TA)n Simple_repeat Simple_repeat 2 125 0 1887 156 0 7 chr6 79527826 79528121 -109751433 - AluSx SINE Alu -19 293 1 21 71 0 0 chr6 79528275 79528317 -109751237 + AT_rich Low_complexity Low_complexity 1 42 0 30 27 0 0 chr6 79528867 79528904 -109750650 + AT_rich Low_complexity Low_complexity 1 37 0 38 0 0 0 chr6 79529761 79529799 -109749755 + AT_rich Low_complexity Low_complexity 1 38 0 360 198 0 0 chr6 79532866 79532934 -109746620 + MIR SINE MIR 106 172 -90 1484 225 182 18 chr6 79533050 79533539 -109746015 - MER90 LTR ERV1 0 614 46 201 291 47 58 chr6 79534155 79534241 -109745313 + MIR SINE MIR 90 174 -88 22 35 0 0 chr6 79535142 79535171 -109744383 + AT_rich Low_complexity Low_complexity 1 29 0 1067 199 14 19 chr6 79535276 79535492 -109744062 - AluJo SINE Alu -22 290 76 797 314 89 33 chr6 79535711 79536285 -109743269 + L2 LINE L2 2305 2910 -404 282 228 38 0 chr6 79537524 79537603 -109741951 + (TA)n Simple_repeat Simple_repeat 1 82 0 691 64 0 11 chr6 79537774 79537868 -109741686 + L1PA5 LINE L1 6058 6150 -4 195 42 0 0 chr6 79539429 79539453 -109740101 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 245 297 68 25 chr6 79539467 79539585 -109739969 + L2 LINE L2 3191 3313 0 406 305 129 57 chr6 79539707 79539894 -109739660 + L2 LINE L2 2548 2720 -593 2238 64 0 7 chr6 79539894 79540174 -109739380 - AluY SINE Alu -16 295 18 406 305 129 57 chr6 79540174 79540698 -109738856 + L2 LINE L2 2720 3313 0 2035 149 0 7 chr6 79540718 79541019 -109738535 + AluSx SINE Alu 1 299 -13 243 0 0 0 chr6 79541512 79541539 -109738015 + (TG)n Simple_repeat Simple_repeat 2 28 0 2170 112 0 0 chr6 79543129 79543423 -109736131 + AluSx SINE Alu 1 294 -18 378 0 0 0 chr6 79544081 79544123 -109735431 + (TG)n Simple_repeat Simple_repeat 2 43 0 898 214 6 11 chr6 79545932 79546114 -109733440 - MER5A DNA MER1_type 0 189 9 287 270 40 0 chr6 79548417 79548491 -109731063 + MIR SINE MIR 114 190 -72 373 342 111 5 chr6 79550157 79550356 -109729198 + MIR SINE MIR 34 253 -9 192 284 15 30 chr6 79550512 79550579 -109728975 + L2 LINE L2 3149 3214 -58 311 314 0 29 chr6 79551952 79552054 -109727500 + L2 LINE L2 3215 3313 0 22 0 0 0 chr6 79552334 79552356 -109727198 + AT_rich Low_complexity Low_complexity 1 22 0 199 266 113 87 chr6 79552918 79553253 -109726301 - L2 LINE L2 -126 3187 2844 619 172 166 0 chr6 79554084 79554229 -109725325 - MER3 DNA MER1_type -87 122 1 426 184 0 13 chr6 79554536 79554612 -109724942 - MER2 DNA MER2_type -14 331 257 193 237 132 26 chr6 79554734 79554848 -109724706 - L2 LINE L2 -558 2756 2631 434 301 252 13 chr6 79554860 79555362 -109724192 + L2 LINE L2 2430 3061 -211 1775 118 27 97 chr6 79555484 79555813 -109723741 - AluSg SINE Alu -1 309 4 183 378 31 47 chr6 79556060 79556314 -109723240 - L2 LINE L2 -820 2494 2245 1070 154 62 0 chr6 79556323 79556518 -109723036 - MER2 DNA MER2_type -1 344 138 1118 219 9 0 chr6 79556539 79556749 -109722805 + MER8 DNA MER2_type 28 239 0 711 173 39 0 chr6 79556749 79556875 -109722679 - MER2 DNA MER2_type -214 131 1 25 0 0 0 chr6 79557434 79557459 -109722095 + AT_rich Low_complexity Low_complexity 1 25 0 329 276 7 92 chr6 79557750 79557902 -109721652 + MIR SINE MIR 98 236 -26 404 274 46 26 chr6 79558397 79558550 -109721004 + MIR3 SINE MIR 31 186 -22 23 0 0 0 chr6 79558588 79558611 -109720943 + AT_rich Low_complexity Low_complexity 1 23 0 236 303 40 40 chr6 79558846 79558945 -109720609 - L2 LINE L2 0 3313 3215 24 53 0 0 chr6 79559287 79559325 -109720229 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr6 79559368 79559392 -109720162 + AT_rich Low_complexity Low_complexity 1 24 0 1178 202 108 25 chr6 79559588 79559865 -109719689 + AluJo SINE Alu 3 302 0 32 57 0 0 chr6 79560872 79560925 -109718629 + AT_rich Low_complexity Low_complexity 1 53 0 2217 174 26 14 chr6 79561639 79562064 -109717490 - Tigger2a DNA MER2_type 0 434 5 408 221 22 33 chr6 79562134 79562315 -109717239 + (TA)n Simple_repeat Simple_repeat 2 180 0 191 317 92 17 chr6 79562921 79563041 -109716513 - MIR SINE MIR -14 248 120 424 117 27 36 chr6 79563483 79563594 -109715960 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 208 254 0 17 chr6 79563620 79563679 -109715875 + (CATA)n Simple_repeat Simple_repeat 2 59 0 182 247 62 62 chr6 79564416 79564497 -109715057 - L2 LINE L2 -531 2783 2703 189 109 65 0 chr6 79565050 79565096 -109714458 + CT-rich Low_complexity Low_complexity 2 50 0 228 270 0 0 chr6 79565562 79565625 -109713929 + GA-rich Low_complexity Low_complexity 2 64 0 238 239 87 43 chr6 79566068 79566160 -109713394 + MER5B DNA MER1_type 1 96 -82 1027 222 28 9 chr6 79566760 79566976 -109712578 - MER58A DNA MER1_type -3 221 2 450 0 0 0 chr6 79567056 79567106 -109712448 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1852 92 0 38 chr6 79567106 79567361 -109712193 - AluSg SINE Alu -32 278 34 21 57 0 0 chr6 79568311 79568346 -109711208 + AT_rich Low_complexity Low_complexity 1 35 0 269 114 0 45 chr6 79568573 79568617 -109710937 + 5S rRNA rRNA 1 42 -79 259 200 50 10 chr6 79568640 79568740 -109710814 + (TATAG)n Simple_repeat Simple_repeat 2 105 0 198 338 0 0 chr6 79568823 79568891 -109710663 - L2 LINE L2 0 3272 3205 180 0 0 0 chr6 79569036 79569056 -109710498 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 629 308 167 18 chr6 79569077 79569506 -109710048 - L2 LINE L2 -229 3043 2577 204 253 198 37 chr6 79569542 79569704 -109709850 - L2 LINE L2 -905 2409 2222 1172 342 52 31 chr6 79569705 79570381 -109709173 - L2 LINE L2 -1483 1831 1142 493 264 161 0 chr6 79570402 79570557 -109708997 + MER5A DNA MER1_type 10 189 0 421 240 25 4 chr6 79570686 79570807 -109708747 + MLT1I LTR MaLR 42 143 -266 336 318 71 13 chr6 79570843 79570997 -109708557 + MLT1I LTR MaLR 244 406 -3 439 318 40 16 chr6 79572817 79573069 -109706485 + MIR SINE MIR 5 262 0 295 249 91 88 chr6 79574266 79574652 -109704902 + L1MEd LINE L1 640 1026 -5093 268 306 19 28 chr6 79574820 79574928 -109704626 - MIR SINE MIR -109 153 47 210 339 0 0 chr6 79576215 79576277 -109703277 - L2 LINE L2 -381 2932 2871 350 306 172 85 chr6 79576463 79576924 -109702630 - L2 LINE L2 0 3313 2802 248 299 41 82 chr6 79577046 79577193 -109702361 - MIR SINE MIR -119 143 3 21 82 0 0 chr6 79578101 79578150 -109701404 + AT_rich Low_complexity Low_complexity 1 49 0 342 0 0 0 chr6 79580074 79580112 -109699442 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 261 362 49 42 chr6 79581414 79581864 -109697690 + L2 LINE L2 2511 2963 -351 204 222 22 0 chr6 79582069 79582114 -109697440 + L2 LINE L2 3226 3271 -1 1654 149 10 45 chr6 79582573 79582898 -109696656 + AluSx SINE Alu 3 317 0 22 35 0 0 chr6 79583098 79583127 -109696427 + AT_rich Low_complexity Low_complexity 1 29 0 2406 66 0 0 chr6 79584472 79584774 -109694780 - AluY SINE Alu -9 302 1 243 260 52 52 chr6 79585005 79585082 -109694472 + L2 LINE L2 3237 3313 0 216 301 58 48 chr6 79585301 79585404 -109694150 + MIR SINE MIR 37 140 -122 2866 256 6 5 chr6 79585434 79586076 -109693478 + MER82 DNA MER2_type 11 653 0 334 260 153 27 chr6 79587030 79587180 -109692374 + MER112 DNA MER1_type 1 169 -91 2195 116 7 0 chr6 79587426 79587727 -109691827 - AluSc SINE Alu -6 303 1 745 277 106 3 chr6 79588138 79588387 -109691167 + MIR SINE MIR 3 262 0 22 0 0 0 chr6 79588539 79588561 -109690993 + AT_rich Low_complexity Low_complexity 1 22 0 1898 144 5 76 chr6 79589367 79589624 -109689930 - MLT1B LTR MaLR 0 390 169 1960 60 0 0 chr6 79589624 79589876 -109689678 - L1PA5 LINE L1 0 6154 5903 1898 144 5 76 chr6 79589876 79590014 -109689540 - MLT1B LTR MaLR -221 169 23 400 57 171 43 chr6 79591555 79591625 -109687929 + MADE1 DNA Mariner 1 79 -1 1975 125 0 7 chr6 79591712 79591991 -109687563 - AluSx SINE Alu -8 304 28 205 172 0 52 chr6 79592015 79592073 -109687481 + CT-rich Low_complexity Low_complexity 3 57 0 518 335 99 29 chr6 79592113 79592867 -109686687 + L2 LINE L2 2187 3067 -246 252 0 0 0 chr6 79592877 79592905 -109686649 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 315 0 0 0 chr6 79592904 79592939 -109686615 + (CA)n Simple_repeat Simple_repeat 1 35 0 921 194 66 122 chr6 79592990 79593377 -109686177 - MLT1A2 LTR MaLR 0 374 8 476 312 5 43 chr6 79593384 79593570 -109685984 + L2 LINE L2 3135 3313 0 279 367 54 42 chr6 79594540 79594780 -109684774 - L2 LINE L2 -225 3047 2805 21 57 0 0 chr6 79595121 79595156 -109684398 + AT_rich Low_complexity Low_complexity 1 35 0 385 325 127 6 chr6 79595712 79595878 -109683676 - MIR SINE MIR -12 250 65 234 116 0 0 chr6 79595984 79596027 -109683527 + (A)n Simple_repeat Simple_repeat 1 43 0 297 0 0 0 chr6 79596324 79596346 -109683208 + (TG)n Simple_repeat Simple_repeat 1 55 0 297 0 0 0 chr6 79596346 79596379 -109683175 + (TG)n Simple_repeat Simple_repeat 2 34 0 2581 114 0 10 chr6 79596466 79596862 -109682692 + L1PA16 LINE L1 5773 6164 -2 321 280 40 0 chr6 79596927 79597002 -109682552 - L2 LINE L2 -20 3252 3175 251 27 0 27 chr6 79597406 79597443 -109682111 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 305 254 42 0 chr6 79597577 79597648 -109681906 - tRNA-Ile-ATT tRNA tRNA -3 74 1 785 243 47 19 chr6 79601206 79601420 -109678134 + MER58A DNA MER1_type 1 220 -4 2043 165 58 54 chr6 79601453 79602108 -109677446 - MER67C LTR ERV1 -2 708 10 291 214 0 0 chr6 79602849 79602919 -109676635 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 218 305 160 38 chr6 79602921 79603052 -109676502 + MIR SINE MIR 64 210 -52 226 295 0 19 chr6 79603882 79603987 -109675567 + (TATATG)n Simple_repeat Simple_repeat 4 106 0 21 0 0 0 chr6 79607425 79607446 -109672108 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr6 79607567 79607610 -109671944 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr6 79608153 79608175 -109671379 + AT_rich Low_complexity Low_complexity 1 22 0 192 329 38 62 chr6 79608910 79609120 -109670434 - L2 LINE L2 -640 2674 2470 215 366 106 0 chr6 79609158 79609300 -109670254 - L2 LINE L2 -962 2352 2196 2566 46 0 0 chr6 79610023 79610326 -109669228 + AluY SINE Alu 3 305 -6 23 0 0 0 chr6 79610326 79610349 -109669205 + AT_rich Low_complexity Low_complexity 1 23 0 771 338 66 32 chr6 79611261 79611728 -109667826 - L2 LINE L2 -14 3299 2817 4968 132 75 8 chr6 79611790 79612118 -109667436 - Tigger3b DNA MER2_type -1806 1222 918 188 35 35 0 chr6 79612118 79612147 -109667407 + (TGAG)n Simple_repeat Simple_repeat 1 30 0 4968 132 75 8 chr6 79612147 79612707 -109666847 - Tigger3b DNA MER2_type -2110 918 274 543 194 31 0 chr6 79612705 79612803 -109666751 - Tigger3b DNA MER2_type -1129 102 2 * 534 308 68 28 chr6 79612803 79613053 -109666501 - L2 LINE L2 -594 2720 2461 230 279 38 0 chr6 79613192 79613271 -109666283 - L3b LINE CR1 -204 1379 1298 6783 50 0 36 chr6 79615045 79615185 -109664369 + L1PA7 LINE L1 5270 5414 -740 252 0 0 0 chr6 79615185 79615213 -109664341 + (CA)n Simple_repeat Simple_repeat 1 28 0 6783 50 0 36 chr6 79615213 79615989 -109663565 + L1PA7 LINE L1 5414 6153 -1 237 80 40 20 chr6 79616029 79616079 -109663475 + CT-rich Low_complexity Low_complexity 5 55 0 1034 99 11 22 chr6 79616152 79616334 -109663220 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 2355 74 0 3 chr6 79616367 79616665 -109662889 + AluY SINE Alu 1 297 -14 1703 159 11 0 chr6 79616728 79617174 -109662380 - AluJb SINE Alu 0 458 10 180 318 91 0 chr6 79618057 79618123 -109661431 + MIR SINE MIR 31 102 -160 26 0 0 0 chr6 79618311 79618337 -109661217 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr6 79619646 79619668 -109659886 + AT_rich Low_complexity Low_complexity 1 22 0 347 188 43 7 chr6 79619759 79619897 -109659657 + (TA)n Simple_repeat Simple_repeat 2 144 0 294 115 0 0 chr6 79619900 79619952 -109659602 + (GA)n Simple_repeat Simple_repeat 1 52 0 184 180 98 16 chr6 79620400 79620461 -109659093 + MIR SINE MIR 132 197 -65 838 313 77 39 chr6 79620861 79621318 -109658236 - L2 LINE L2 -586 2728 2255 211 230 115 35 chr6 79621549 79621636 -109657918 - MIR SINE MIR -122 140 47 190 314 20 0 chr6 79621764 79621815 -109657739 - L2 LINE L2 -84 3188 3137 835 354 54 9 chr6 79622050 79622510 -109657044 - L2 LINE L2 -479 2835 2355 591 271 7 14 chr6 79622586 79622730 -109656824 + MER58B DNA MER1_type 199 341 0 255 114 0 0 chr6 79622898 79622942 -109656612 + (TC)n Simple_repeat Simple_repeat 1 44 0 531 302 130 38 chr6 79623030 79623345 -109656209 + L2 LINE L2 2970 3313 0 219 36 0 0 chr6 79623576 79623604 -109655950 + (CA)n Simple_repeat Simple_repeat 2 29 0 2752 189 25 10 chr6 79624086 79624595 -109654959 + Tigger7 DNA MER2_type 1 517 -1970 513 214 0 19 chr6 79624581 79624684 -109654870 + Tigger7 DNA MER2_type 2387 2487 0 * 898 190 0 31 chr6 79624699 79624820 -109654734 - MER58B DNA MER1_type -2084 336 213 2221 171 11 35 chr6 79624820 79624987 -109654567 - MER65A LTR ERV1 0 445 275 2419 79 3 0 chr6 79624987 79625292 -109654262 - AluY SINE Alu -5 306 1 2221 171 11 35 chr6 79625292 79625541 -109654013 - MER65A LTR ERV1 -170 275 38 872 65 16 0 chr6 79625541 79625664 -109653890 + (TTTC)n Simple_repeat Simple_repeat 1 125 0 2221 171 11 35 chr6 79625664 79625702 -109653852 - MER65A LTR ERV1 -407 38 1 898 190 0 31 chr6 79625702 79625743 -109653811 - MER58B DNA MER1_type -2207 213 179 297 0 0 0 chr6 79625940 79625973 -109653581 + (A)n Simple_repeat Simple_repeat 1 33 0 1235 183 97 8 chr6 79626888 79627156 -109652398 - AluJb SINE Alu -20 292 1 2050 164 13 21 chr6 79627180 79627558 -109651996 + THE1C LTR MaLR 1 375 0 242 250 18 0 chr6 79627594 79627650 -109651904 + L2 LINE L2 3252 3308 -5 865 114 36 6 chr6 79628463 79628630 -109650924 + GA-rich Low_complexity Low_complexity 3 174 0 491 245 54 20 chr6 79628936 79629083 -109650471 - MIR SINE MIR -32 230 79 286 262 36 0 chr6 79629085 79629169 -109650385 + MER94 DNA DNA 1 87 -47 1311 78 0 0 chr6 79629172 79629352 -109650202 + AluY SINE Alu 131 310 -1 900 145 6 6 chr6 79630771 79630943 -109648611 + L1MA8 LINE L1 6120 6291 0 2318 75 0 7 chr6 79632147 79632442 -109647112 - AluY SINE Alu -18 293 1 42 48 0 0 chr6 79632648 79632711 -109646843 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr6 79632788 79632809 -109646745 + AT_rich Low_complexity Low_complexity 1 21 0 705 93 47 0 chr6 79634031 79634138 -109645416 + L1PA13 LINE L1 6050 6161 -2 2154 75 21 0 chr6 79637182 79637463 -109642091 - AluY SINE Alu -16 295 9 1930 135 10 3 chr6 79638187 79638476 -109641078 + AluSx SINE Alu 1 291 -21 379 374 12 5 chr6 79638479 79638666 -109640888 - MIR3 SINE MIR -5 203 11 493 222 56 35 chr6 79638999 79639143 -109640411 + L1ME LINE L1 5518 5664 -457 11223 218 39 22 chr6 79640424 79641065 -109638489 - L1MB2 LINE L1 -2 6169 5540 364 75 0 30 chr6 79641065 79641132 -109638422 + (TTTTG)n Simple_repeat Simple_repeat 5 69 0 1815 146 4 4 chr6 79641138 79641413 -109638141 - AluSx SINE Alu -37 275 1 11223 218 39 22 chr6 79641413 79642795 -109636759 - L1MB2 LINE L1 -635 5536 4179 212 0 36 0 chr6 79642795 79642823 -109636731 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 11223 218 39 22 chr6 79642823 79644670 -109634884 - L1MB2 LINE L1 -1992 4179 2218 594 109 0 0 chr6 79645466 79645558 -109633996 + (TC)n Simple_repeat Simple_repeat 1 92 0 30 0 0 0 chr6 79645851 79645881 -109633673 + AT_rich Low_complexity Low_complexity 1 30 0 808 260 67 61 chr6 79646721 79647048 -109632506 + L1ME1 LINE L1 5549 5877 -289 560 237 66 15 chr6 79647069 79647267 -109632287 + L1ME1 LINE L1 5959 6166 0 209 303 13 26 chr6 79648608 79648684 -109630870 - L2 LINE L2 -10 3262 3188 305 256 11 11 chr6 79648689 79648779 -109630775 + L1ME1 LINE L1 6057 6146 -20 275 310 47 47 chr6 79649258 79649387 -109630167 - MIR SINE MIR -123 139 11 315 0 0 0 chr6 79651048 79651083 -109628471 + (CA)n Simple_repeat Simple_repeat 2 36 0 1265 166 146 32 chr6 79651097 79651405 -109628149 - MER2 DNA MER2_type 0 344 2 204 226 0 0 chr6 79651445 79651507 -109628047 + (TA)n Simple_repeat Simple_repeat 2 63 0 775 243 47 9 chr6 79653214 79653428 -109626126 - MER58A DNA MER1_type -2 222 1 462 204 39 19 chr6 79653428 79653531 -109626023 + MLT1D LTR MaLR 1 105 -400 1440 138 7 89 chr6 79654751 79655033 -109624521 + AluSg SINE Alu 41 299 -11 582 178 0 0 chr6 79655613 79655731 -109623823 - L1MA7 LINE L1 -3 6288 6171 609 114 49 32 chr6 79655731 79655854 -109623700 + L1MA7 LINE L1 6029 6153 -138 260 260 141 102 chr6 79655881 79656058 -109623496 - MER5A DNA MER1_type 0 189 6 333 371 164 0 chr6 79656187 79656419 -109623135 + L2 LINE L2 2996 3265 -7 1485 188 32 24 chr6 79658663 79659003 -109620551 - MER61A LTR ERV1 0 343 1 192 367 22 33 chr6 79659559 79659649 -109619905 + L3 LINE CR1 206 294 -1283 2402 59 0 16 chr6 79659818 79660125 -109619429 - AluY SINE Alu -9 302 1 398 242 25 96 chr6 79660126 79660283 -109619271 + L3 LINE CR1 612 757 -820 338 306 10 0 chr6 79660336 79660434 -109619120 + L3 LINE CR1 961 1059 -518 22 35 0 0 chr6 79662304 79662333 -109617221 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 79662717 79662741 -109616813 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr6 79663495 79663529 -109616025 + AT_rich Low_complexity Low_complexity 1 34 0 324 309 60 33 chr6 79663731 79663962 -109615592 - L1ME3 LINE L1 -233 5929 5681 390 352 124 0 chr6 79663966 79664199 -109615355 + L2 LINE L2 3041 3302 -11 2223 90 3 0 chr6 79664613 79664912 -109614642 + L1P LINE L1 3896 4195 -1951 26 50 0 0 chr6 79666934 79666974 -109612580 + AT_rich Low_complexity Low_complexity 1 40 0 916 250 18 9 chr6 79667265 79667485 -109612069 + MER58A DNA MER1_type 3 224 0 952 296 85 43 chr6 79667610 79668307 -109611247 - L1MEd LINE L1 -4897 1222 497 328 295 46 69 chr6 79668667 79668884 -109610670 - L2 LINE L2 -1 3312 3101 2237 116 0 0 chr6 79669052 79669353 -109610201 - AluSx SINE Alu -9 303 3 24 0 0 0 chr6 79669836 79669860 -109609694 + AT_rich Low_complexity Low_complexity 1 24 0 221 291 70 70 chr6 79670017 79670175 -109609379 + MIR SINE MIR 95 252 -10 22 56 0 0 chr6 79670637 79670673 -109608881 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr6 79671091 79671121 -109608433 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr6 79671352 79671376 -109608178 + AT_rich Low_complexity Low_complexity 1 24 0 822 193 21 0 chr6 79671978 79672165 -109607389 - LTR56 LTR ERV1 -167 278 88 1492 195 124 0 chr6 79672642 79672965 -109606589 + MLT1A1 LTR MaLR 1 363 -2 190 338 15 29 chr6 79673398 79673466 -109606088 + L2 LINE L2 3246 3312 -1 2145 105 0 3 chr6 79673643 79673954 -109605600 - AluSx SINE Alu 0 310 1 185 275 43 14 chr6 79674447 79674516 -109605038 - L2 LINE L2 -779 2535 2465 757 159 6 70 chr6 79675057 79675214 -109604340 - MER20 DNA MER1_type -72 147 1 204 241 155 0 chr6 79675220 79675278 -109604276 + MER5A DNA MER1_type 50 116 -73 191 246 49 82 chr6 79675318 79675379 -109604175 + MER5A DNA MER1_type 130 188 -1 272 238 0 0 chr6 79675768 79675831 -109603723 + (TTCA)n Simple_repeat Simple_repeat 4 66 0 184 258 227 15 chr6 79675833 79675899 -109603655 - L2 LINE L2 -4 3268 3189 5691 101 11 1 chr6 79676266 79677081 -109602473 + L1PA13 LINE L1 5335 6157 -6 23 54 0 0 chr6 79677165 79677202 -109602352 + AT_rich Low_complexity Low_complexity 1 37 0 235 345 67 71 chr6 79677854 79678274 -109601280 - L2 LINE L2 -36 3236 2819 269 326 92 44 chr6 79679110 79679499 -109600055 - L2 LINE L2 -472 2842 2435 28 0 0 0 chr6 79680001 79680029 -109599525 + AT_rich Low_complexity Low_complexity 1 28 0 219 186 0 0 chr6 79681067 79681110 -109598444 + (CA)n Simple_repeat Simple_repeat 2 44 0 273 221 0 0 chr6 79682935 79683003 -109596551 + (TATG)n Simple_repeat Simple_repeat 1 68 0 21 36 0 0 chr6 79683066 79683094 -109596460 + AT_rich Low_complexity Low_complexity 1 28 0 405 194 0 65 chr6 79683425 79683518 -109596036 - AluJ/FLAM SINE Alu -225 87 1 1102 152 244 57 chr6 79683688 79684004 -109595550 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr6 79684102 79684131 -109595423 + AT_rich Low_complexity Low_complexity 1 29 0 1076 213 14 5 chr6 79684325 79684541 -109595013 + MER20 DNA MER1_type 1 218 -1 22 0 0 0 chr6 79685506 79685528 -109594026 + AT_rich Low_complexity Low_complexity 1 22 0 1029 145 0 2 chr6 79686093 79686518 -109593036 + (GGAA)n Simple_repeat Simple_repeat 1 423 0 225 380 0 0 chr6 79686886 79686986 -109592568 + (CCCG)n Simple_repeat Simple_repeat 2 101 0 774 149 0 0 chr6 79687231 79687365 -109592189 + (GGAA)n Simple_repeat Simple_repeat 1 134 0 252 0 0 0 chr6 79687795 79687823 -109591731 + (TG)n Simple_repeat Simple_repeat 2 29 0 22 35 0 0 chr6 79687968 79687997 -109591557 + AT_rich Low_complexity Low_complexity 1 29 0 567 232 151 5 chr6 79688011 79688057 -109591497 - MIR SINE MIR -10 252 214 198 71 0 0 chr6 79688057 79688085 -109591469 + (TG)n Simple_repeat Simple_repeat 1 28 0 567 232 151 5 chr6 79688085 79688223 -109591331 - MIR SINE MIR -48 214 41 2333 45 42 3 chr6 79688269 79688557 -109590997 + AluY SINE Alu 1 299 -12 43 35 0 0 chr6 79690110 79690167 -109589387 + AT_rich Low_complexity Low_complexity 1 57 0 3892 24 0 0 chr6 79690398 79690852 -109588702 - L1PA2 LINE L1 -1 6154 5701 27 29 0 0 chr6 79691144 79691178 -109588376 + AT_rich Low_complexity Low_complexity 1 34 0 565 258 39 7 chr6 79692018 79692173 -109587381 - MIR SINE MIR -72 190 31 1908 105 6 96 chr6 79692222 79692555 -109586999 + AluSx SINE Alu 9 311 -1 180 68 45 23 chr6 79692589 79692633 -109586921 + (TTATG)n Simple_repeat Simple_repeat 3 47 0 332 257 14 0 chr6 79693748 79693822 -109585732 - L2 LINE L2 -2 3311 3237 2853 123 20 9 chr6 79693966 79694422 -109585132 + L1PA16 LINE L1 5706 6166 0 198 71 0 0 chr6 79694907 79694935 -109584619 + (TG)n Simple_repeat Simple_repeat 1 28 0 201 368 52 65 chr6 79695009 79695164 -109584390 - L2 LINE L2 -203 3069 2917 369 346 0 0 chr6 79695372 79695479 -109584075 - L2 LINE L2 -519 2795 2689 522 301 81 0 chr6 79695873 79696059 -109583495 - MIR SINE MIR -55 207 7 2123 110 0 0 chr6 79696307 79696589 -109582965 - AluSg SINE Alu -12 298 17 486 340 50 38 chr6 79698563 79698801 -109580753 - MLT1J LTR MaLR -169 342 102 382 190 0 0 chr6 79698960 79699018 -109580536 - MER2 DNA MER2_type -5 340 283 1267 135 14 42 chr6 79699054 79699123 -109580431 - MER2 DNA MER2_type -135 210 141 2090 133 0 0 chr6 79699123 79699417 -109580137 - AluSx SINE Alu -18 294 1 1267 135 14 42 chr6 79699417 79699562 -109579992 - MER2 DNA MER2_type -204 141 2 492 184 11 38 chr6 79699582 79699767 -109579787 + (TA)n Simple_repeat Simple_repeat 1 180 0 379 280 136 0 chr6 79700462 79700594 -109578960 - MIR SINE MIR -6 256 107 3636 84 11 4 chr6 79700664 79701185 -109578369 - L1PA7 LINE L1 -789 5357 4833 * 6331 54 0 4 chr6 79701163 79701964 -109577590 + L1PA7 LINE L1 5353 6150 -4 377 260 107 67 chr6 79702040 79702190 -109577364 + LTR16B LTR ERVL 1 156 -308 180 0 0 0 chr6 79702199 79702219 -109577335 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 2150 193 77 0 chr6 79702262 79702693 -109576861 - MLT2C2 LTR ERVL 0 464 1 292 281 73 0 chr6 79704492 79704574 -109574980 + MIR3 SINE MIR 114 201 -7 23 68 0 0 chr6 79705191 79705235 -109574319 + AT_rich Low_complexity Low_complexity 1 44 0 1565 300 91 26 chr6 79705645 79706542 -109573012 - L2 LINE L2 0 3313 2355 1014 207 5 0 chr6 79706586 79706774 -109572780 + MER5A DNA MER1_type 1 189 0 214 364 84 13 chr6 79706853 79707007 -109572547 + MIR SINE MIR 90 254 -8 8161 108 12 89 chr6 79707361 79708831 -109570723 - SVA Other Other 0 1386 30 207 0 0 0 chr6 79709148 79709171 -109570383 + (CATA)n Simple_repeat Simple_repeat 4 26 0 346 254 15 52 chr6 79709171 79709305 -109570249 + MIR SINE MIR 76 204 -58 288 53 0 0 chr6 79709314 79709352 -109570202 + (TG)n Simple_repeat Simple_repeat 2 39 0 921 322 118 7 chr6 79709731 79710292 -109569262 - L2 LINE L2 -3 3310 2690 22 0 0 0 chr6 79710673 79710695 -109568859 + AT_rich Low_complexity Low_complexity 1 22 0 510 289 0 13 chr6 79710721 79710873 -109568681 + MIR SINE MIR 40 189 -73 226 239 99 0 chr6 79710903 79710974 -109568580 - L1MDb LINE L1 -5124 1285 1208 439 278 46 82 chr6 79710988 79711269 -109568285 - HAL1 LINE L1 -1423 1084 814 1717 167 50 33 chr6 79711663 79712022 -109567532 + MLT1A1 LTR MaLR 1 365 0 2862 175 50 17 chr6 79712486 79712531 -109567023 - MLT2B3 LTR ERVL 0 554 512 474 108 0 0 chr6 79712531 79712614 -109566940 + (CATA)n Simple_repeat Simple_repeat 2 84 0 2862 175 50 17 chr6 79712614 79713104 -109566450 - MLT2B3 LTR ERVL -42 512 1 205 337 43 43 chr6 79713806 79713898 -109565656 + MIR SINE MIR 55 146 -62 276 291 35 64 chr6 79715410 79715551 -109564003 - MIR SINE MIR -60 202 66 1832 209 22 6 chr6 79716312 79716671 -109562883 - MLT1A1 LTR MaLR 0 365 1 7061 103 2 0 chr6 79717952 79719738 -109559816 - L1PA7 LINE L1 -3 6151 4360 1789 112 0 0 chr6 79719738 79719998 -109559556 + L1P LINE L1 3439 3698 -2448 2823 121 9 2 chr6 79720015 79720452 -109559102 - L1PB1 LINE L1 -2 6149 5710 192 368 23 0 chr6 79720566 79720653 -109558901 + L2 LINE L2 2963 3051 -221 248 167 0 19 chr6 79721038 79721092 -109558462 + (TATG)n Simple_repeat Simple_repeat 2 54 0 329 303 18 0 chr6 79722396 79722505 -109557049 + (TATG)n Simple_repeat Simple_repeat 3 113 0 249 108 0 0 chr6 79723359 79723396 -109556158 + (T)n Simple_repeat Simple_repeat 1 37 0 188 373 0 0 chr6 79723415 79723482 -109556072 + L3 LINE CR1 1508 1574 -3 758 265 55 82 chr6 79723811 79723838 -109555716 - MLT1J1 LTR MaLR -20 426 400 2132 131 0 0 chr6 79723838 79724135 -109555419 + AluSg SINE Alu 3 299 -11 758 265 55 82 chr6 79724135 79724545 -109555009 - MLT1J1 LTR MaLR -46 400 1 361 292 154 15 chr6 79725922 79726117 -109553437 - MIR SINE MIR -27 235 14 2683 130 14 34 chr6 79726623 79727124 -109552430 + L1MA3 LINE L1 5815 6305 0 813 275 64 104 chr6 79727196 79727461 -109552093 - L2 LINE L2 0 3313 3039 2336 50 0 0 chr6 79727461 79727742 -109551812 - AluY SINE Alu -30 281 1 813 275 64 104 chr6 79727742 79728036 -109551518 - L2 LINE L2 -274 3039 2760 332 305 62 23 chr6 79728123 79728251 -109551303 - MIR3 SINE MIR -36 172 40 8817 168 20 21 chr6 79729197 79731196 -109548358 - L1M1 LINE L1 -624 7100 5103 459 52 0 0 chr6 79731196 79731254 -109548300 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 8817 168 20 21 chr6 79731254 79731368 -109548186 - L1M1 LINE L1 -2621 5103 4990 7781 199 27 27 chr6 79731368 79733047 -109546507 - MER52A LTR ERV1 0 1755 1 21615 163 26 13 chr6 79733051 79736252 -109543302 - L1M1 LINE L1 -2579 4986 1700 441 0 0 0 chr6 79736252 79736301 -109543253 + (TG)n Simple_repeat Simple_repeat 2 50 0 21615 163 26 13 chr6 79736301 79738006 -109541548 - L1M1 LINE L1 -5865 1700 19 2608 100 16 3 chr6 79738102 79738472 -109541082 + THE1C LTR MaLR 1 375 0 2288 77 0 0 chr6 79740058 79740344 -109539210 + AluY SINE Alu 22 307 -4 234 192 0 0 chr6 79741137 79741189 -109538365 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 23 78 0 0 chr6 79742284 79742335 -109537219 + AT_rich Low_complexity Low_complexity 1 51 0 26 0 0 0 chr6 79742368 79742394 -109537160 + AT_rich Low_complexity Low_complexity 1 26 0 407 326 72 39 chr6 79742559 79743054 -109536500 - L2 LINE L2 -169 3144 2631 271 348 76 0 chr6 79743121 79743213 -109536341 - MIR3 SINE MIR -10 198 100 672 299 32 31 chr6 79743332 79743560 -109535994 + MIR SINE MIR 1 228 -34 296 87 0 0 chr6 79743971 79744017 -109535537 - MADE1 DNA Mariner 0 80 35 255 254 60 45 chr6 79744202 79744336 -109535218 + MLT1L LTR MaLR 470 605 -10 30 83 0 0 chr6 79744889 79744961 -109534593 + AT_rich Low_complexity Low_complexity 1 72 0 2301 273 75 41 chr6 79745997 79747113 -109532441 + L2 LINE L2 2160 3313 0 531 293 39 39 chr6 79747290 79747495 -109532059 + MIR SINE MIR 30 234 -28 38 39 0 0 chr6 79747515 79747567 -109531987 + AT_rich Low_complexity Low_complexity 1 52 0 636 198 135 0 chr6 79747761 79747887 -109531667 - MER5A DNA MER1_type 0 189 47 1287 251 104 74 chr6 79747887 79748418 -109531136 - MLT1E LTR MaLR 0 567 22 184 298 0 0 chr6 79748418 79748465 -109531089 - MER5A DNA MER1_type -140 49 3 21 89 0 0 chr6 79748568 79748624 -109530930 + AT_rich Low_complexity Low_complexity 1 56 0 413 336 58 34 chr6 79750422 79750630 -109528924 + L2 LINE L2 3055 3267 -5 201 289 185 22 chr6 79751003 79751138 -109528416 - L2 LINE L2 0 3272 3116 237 357 0 0 chr6 79751197 79751267 -109528287 + L2 LINE L2 3244 3313 0 590 266 25 6 chr6 79752072 79752230 -109527324 - MIR SINE MIR 0 262 102 205 311 76 8 chr6 79752346 79752465 -109527089 - MIR SINE MIR -12 250 124 322 254 55 18 chr6 79752964 79753074 -109526480 - L2 LINE L2 -9 3304 3191 251 325 56 40 chr6 79753587 79753713 -109525841 - L2 LINE L2 -496 2818 2691 211 111 56 37 chr6 79754966 79755020 -109524534 + (TTTAA)n Simple_repeat Simple_repeat 4 58 0 303 147 51 70 chr6 79755791 79755947 -109523607 + (TTAAA)n Simple_repeat Simple_repeat 2 154 0 1369 157 17 94 chr6 79757245 79757595 -109521959 - MER33 DNA MER1_type -1 323 1 186 209 23 0 chr6 79757881 79757924 -109521630 - L3 LINE CR1 -1020 557 514 604 257 71 46 chr6 79758144 79758536 -109521018 + MLT1J LTR MaLR 1 461 -50 304 321 106 71 chr6 79758596 79758691 -109520863 - L2 LINE L2 -61 3252 3162 2569 58 0 3 chr6 79758691 79759002 -109520552 + AluY SINE Alu 1 310 -1 304 321 106 71 chr6 79759002 79759341 -109520213 - L2 LINE L2 -151 3162 2778 2360 103 0 0 chr6 79759341 79759651 -109519903 - AluSx SINE Alu -2 310 1 304 321 106 71 chr6 79759651 79759882 -109519672 - L2 LINE L2 -535 2778 2557 25 51 0 0 chr6 79760381 79760420 -109519134 + AT_rich Low_complexity Low_complexity 1 39 0 17390 195 21 27 chr6 79760420 79763668 -109515886 - L1PA16 LINE L1 -9 6860 3595 2153 102 34 0 chr6 79763668 79763962 -109515592 - AluY SINE Alu -7 304 1 17390 195 21 27 chr6 79763962 79767615 -109511939 - L1PA16 LINE L1 -3274 3595 1 21 36 0 0 chr6 79767665 79767693 -109511861 + AT_rich Low_complexity Low_complexity 1 28 0 561 83 0 0 chr6 79768610 79768745 -109510809 + L1PB1 LINE L1 6068 6202 0 992 213 24 24 chr6 79769033 79769240 -109510314 + MER63A DNA MER1_type 4 210 0 198 0 0 0 chr6 79772497 79772519 -109507035 + (A)n Simple_repeat Simple_repeat 1 22 0 203 194 0 0 chr6 79772863 79772899 -109506655 + A-rich Low_complexity Low_complexity 1 36 0 209 184 0 0 chr6 79773105 79773143 -109506411 + (TG)n Simple_repeat Simple_repeat 1 38 0 204 67 0 0 chr6 79773247 79773277 -109506277 + (T)n Simple_repeat Simple_repeat 1 30 0 2277 102 0 3 chr6 79774626 79774929 -109504625 - AluSq SINE Alu -11 302 1 22 0 0 0 chr6 79775261 79775283 -109504271 + AT_rich Low_complexity Low_complexity 1 22 0 5908 156 48 30 chr6 79776165 79777371 -109502183 + Tigger3b DNA MER2_type 4 1231 0 467 247 26 84 chr6 79777983 79778173 -109501381 - L2 LINE L2 -1 3312 3134 2277 138 61 32 chr6 79778362 79778879 -109500675 - MLT2A2 LTR ERVL 0 554 1 385 291 27 0 chr6 79779074 79779184 -109500370 - L2 LINE L2 -1 3312 3200 323 269 145 41 chr6 79779932 79780077 -109499477 + MIR SINE MIR 7 143 -65 36 40 0 0 chr6 79780446 79780496 -109499058 + AT_rich Low_complexity Low_complexity 1 50 0 686 249 138 0 chr6 79781048 79781273 -109498281 + MIR SINE MIR 5 260 -2 1482 197 27 3 chr6 79781571 79781866 -109497688 + AluJo SINE Alu 3 304 -8 1464 201 14 83 chr6 79782653 79783072 -109496482 - MLT1B LTR MaLR 0 390 1 288 295 205 6 chr6 79783187 79783343 -109496211 + MIR SINE MIR 2 188 -74 536 292 39 7 chr6 79784444 79784598 -109494956 + L2 LINE L2 3131 3289 -24 817 316 121 12 chr6 79784602 79785096 -109494458 - L2 LINE L2 -27 3286 2743 483 286 176 5 chr6 79785615 79785814 -109493740 + MIR SINE MIR 16 248 -14 327 302 30 41 chr6 79786058 79786227 -109493327 + MIR SINE MIR 51 217 -45 190 296 52 52 chr6 79786700 79786815 -109492739 - L2 LINE L2 -1069 2245 2131 22 0 0 0 chr6 79787279 79787301 -109492253 + AT_rich Low_complexity Low_complexity 1 22 0 207 114 0 0 chr6 79788777 79788812 -109490742 + (GA)n Simple_repeat Simple_repeat 1 35 0 244 261 0 15 chr6 79790815 79790880 -109488674 + tRNA-Ser-TCA tRNA tRNA 8 71 -14 1185 233 47 33 chr6 79791801 79792101 -109487453 - MSTD LTR MaLR -2 394 91 825 212 0 24 chr6 79792106 79792271 -109487283 - FRAM SINE Alu -5 161 1 3193 82 2 41 chr6 79792290 79792367 -109487187 - MLT2A1 LTR ERVL 0 444 366 243 0 0 0 chr6 79792367 79792394 -109487160 + (TA)n Simple_repeat Simple_repeat 1 27 0 3193 82 2 41 chr6 79792394 79792778 -109486776 - MLT2A1 LTR ERVL -78 366 1 4589 69 29 3 chr6 79792778 79793632 -109485922 - HERVL-A1 LTR ERVL 0 5654 4740 1984 81 0 4 chr6 79793611 79793871 -109485683 - HERVL-A1 LTR ERVL -2567 3087 2829 * 17271 74 13 1 chr6 79793870 79796078 -109483476 - HERVL-A1 LTR ERVL -916 4738 2506 2182 65 0 14 chr6 79796078 79796369 -109483185 - HERVL-A1 LTR ERVL -5367 287 1 390 75 0 0 chr6 79796369 79796422 -109483132 - MLT2A1 LTR ERVL 0 453 401 412 31 0 31 chr6 79796439 79796503 -109483051 + (TA)n Simple_repeat Simple_repeat 2 63 0 2995 97 5 2 chr6 79796503 79796906 -109482648 - MLT2A1 LTR ERVL -40 404 1 565 209 96 0 chr6 79796915 79797030 -109482524 - FLAM_C SINE Alu -17 126 1 566 174 41 0 chr6 79797031 79797129 -109482425 - MSTD LTR MaLR -326 102 1 2315 62 0 23 chr6 79797181 79797486 -109482068 + AluY SINE Alu 1 298 -13 454 366 64 8 chr6 79797486 79797737 -109481817 + MLT1J LTR MaLR 168 432 -79 247 271 163 39 chr6 79797966 79798095 -109481459 + L2 LINE L2 3132 3276 -37 183 266 158 19 chr6 79798252 79798410 -109481144 - MER5C DNA MER1_type -64 260 81 208 159 0 23 chr6 79800110 79800154 -109479400 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 603 64 0 0 chr6 79801077 79801155 -109478399 - MADE1 DNA Mariner -2 78 1 1183 219 217 22 chr6 79801188 79801708 -109477846 + L1MC4a LINE L1 7281 7807 -1 252 0 0 0 chr6 79801799 79801827 -109477727 + (TG)n Simple_repeat Simple_repeat 2 29 0 237 246 0 0 chr6 79805806 79805871 -109473683 + (TA)n Simple_repeat Simple_repeat 2 66 0 213 343 118 0 chr6 79807322 79807424 -109472130 + L2 LINE L2 3132 3245 -27 1712 191 7 7 chr6 79809975 79810279 -109469275 - AluJb SINE Alu -8 304 1 283 228 81 16 chr6 79810305 79810428 -109469126 - L1ME4a LINE L1 0 6121 5991 277 288 121 0 chr6 79811802 79811934 -109467620 + MIR SINE MIR 16 163 -99 183 364 124 8 chr6 79812059 79812188 -109467366 + MIR SINE MIR 116 259 -3 182 217 22 22 chr6 79812581 79812627 -109466927 + L2 LINE L2 3255 3300 -13 186 43 0 0 chr6 79812627 79812650 -109466904 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 682 268 38 14 chr6 79812693 79812906 -109466648 - L2 LINE L2 -4 3309 3092 667 273 86 25 chr6 79812927 79813384 -109466170 - MLT1H LTR MaLR 0 549 1 762 277 121 68 chr6 79813401 79813878 -109465676 - L2 LINE L2 -253 3060 2567 2271 100 0 3 chr6 79814296 79814596 -109464958 + AluSx SINE Alu 1 299 -13 268 326 53 0 chr6 79815154 79815249 -109464305 + MIR3 SINE MIR 61 160 -48 324 270 56 22 chr6 79815249 79815338 -109464216 - MER5B DNA MER1_type 0 178 87 242 236 55 0 chr6 79815386 79815441 -109464113 + MIR3 SINE MIR 151 208 0 25 0 0 0 chr6 79820188 79820213 -109459341 + AT_rich Low_complexity Low_complexity 1 25 0 26 104 0 0 chr6 79822225 79822321 -109457233 + AT_rich Low_complexity Low_complexity 1 96 0 203 162 0 0 chr6 79824408 79824445 -109455109 + GA-rich Low_complexity Low_complexity 2 38 0 192 152 0 0 chr6 79825060 79825093 -109454461 + (CATA)n Simple_repeat Simple_repeat 4 36 0 30 59 0 0 chr6 79825283 79825334 -109454220 + AT_rich Low_complexity Low_complexity 1 51 0 1138 180 71 4 chr6 79827541 79827808 -109451746 - MER33 DNA MER1_type -22 302 18 21 36 0 0 chr6 79830194 79830222 -109449332 + AT_rich Low_complexity Low_complexity 1 28 0 279 305 57 25 chr6 79830994 79831164 -109448390 + MIR SINE MIR 23 244 -18 197 425 28 0 chr6 79831383 79831524 -109448030 + L2 LINE L2 2420 2564 -750 212 339 101 0 chr6 79832135 79832244 -109447310 + L2 LINE L2 3193 3312 -1 238 290 84 46 chr6 79833644 79833775 -109445779 - MER91A DNA MER1_type -32 164 29 247 335 92 63 chr6 79833800 79834116 -109445438 + L2 LINE L2 2947 3271 -1 688 204 35 0 chr6 79834894 79835036 -109444518 - MER58B DNA MER1_type 0 341 195 2260 121 0 0 chr6 79835290 79835597 -109443957 - AluSg SINE Alu -3 307 1 984 224 41 9 chr6 79836795 79837014 -109442540 - MLT1F LTR MaLR 0 542 317 377 291 12 101 chr6 79837108 79837355 -109442199 + L2 LINE L2 2668 2892 -422 473 252 19 0 chr6 79837744 79837851 -109441703 + L2 LINE L2 3204 3312 -1 1208 175 57 7 chr6 79837956 79838236 -109441318 - L1MA9 LINE L1 0 6312 6019 2709 238 110 43 chr6 79838238 79839731 -109439823 - L1ME2 LINE L1 -8 6156 4561 17034 29 3 0 chr6 79841035 79843843 -109435711 - L1PA3 LINE L1 -2 6153 3339 190 275 100 25 chr6 79845326 79845406 -109434148 + MIR SINE MIR 102 187 -75 2475 62 0 3 chr6 79845741 79846046 -109433508 + AluY SINE Alu 1 304 -7 21 0 0 0 chr6 79846172 79846193 -109433361 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 79846499 79846520 -109433034 + AT_rich Low_complexity Low_complexity 1 21 0 189 370 33 0 chr6 79846842 79846934 -109432620 + MIR SINE MIR 54 148 -114 25 83 0 0 chr6 79848190 79848250 -109431304 + AT_rich Low_complexity Low_complexity 1 60 0 1339 162 106 50 chr6 79848931 79849252 -109430302 + MER44D DNA MER2_type 1 609 0 421 269 121 14 chr6 79850088 79850229 -109429325 - MIR3 SINE MIR -11 197 42 440 355 6 17 chr6 79851421 79851593 -109427961 + MER5B DNA MER1_type 1 170 -8 182 192 96 19 chr6 79851756 79851808 -109427746 - MIR SINE MIR -86 176 121 189 147 0 0 chr6 79852976 79853010 -109426544 + (CATA)n Simple_repeat Simple_repeat 1 34 0 2414 141 11 74 chr6 79853032 79853507 -109426047 - MER65A LTR ERV1 0 445 1 1986 231 50 12 chr6 79853507 79854004 -109425550 - MER65A-int LTR ERV1 0 4871 4356 1594 271 75 16 chr6 79854027 79854467 -109425087 - MER65A-int LTR ERV1 -742 4129 3664 192 333 72 0 chr6 79855183 79855252 -109424302 + MIR3 SINE MIR 111 184 -24 729 326 9 4 chr6 79855340 79855570 -109423984 - MIR SINE MIR -13 249 19 205 167 0 0 chr6 79858005 79858041 -109421513 + CT-rich Low_complexity Low_complexity 1 36 0 2274 103 0 0 chr6 79859226 79859528 -109420026 - AluSq SINE Alu -11 302 1 189 0 0 0 chr6 79860245 79860266 -109419288 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 830 134 5 38 chr6 79860773 79860959 -109418595 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 203 192 39 0 chr6 79860959 79861011 -109418543 + CT-rich Low_complexity Low_complexity 3 56 0 21 36 0 0 chr6 79861835 79861863 -109417691 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr6 79862016 79862051 -109417503 + AT_rich Low_complexity Low_complexity 1 35 0 811 124 6 50 chr6 79863128 79863289 -109416265 + L1MA10 LINE L1 6180 6333 -1 2301 98 7 0 chr6 79863313 79863620 -109415934 - AluSg SINE Alu -1 309 1 204 135 0 0 chr6 79864002 79864039 -109415515 + (TTA)n Simple_repeat Simple_repeat 1 37 0 801 263 105 0 chr6 79864052 79864280 -109415274 + MIR SINE MIR 11 262 0 275 306 117 20 chr6 79865038 79865234 -109414320 + MIR SINE MIR 48 262 0 480 35 0 0 chr6 79865390 79865448 -109414106 + (TA)n Simple_repeat Simple_repeat 2 59 0 1718 163 190 0 chr6 79865448 79865774 -109413780 - MER47B DNA MER2_type -5 413 26 207 0 0 0 chr6 79865780 79865803 -109413751 + (TG)n Simple_repeat Simple_repeat 2 24 0 902 239 8 85 chr6 79866717 79866976 -109412578 + MIR SINE MIR 2 240 -22 254 231 0 0 chr6 79869884 79869936 -109409618 + MIR SINE MIR 83 134 -128 2012 113 29 4 chr6 79871725 79872023 -109407531 + AluSg SINE Alu 1 305 0 439 300 91 29 chr6 79873833 79874043 -109405511 - MIR SINE MIR -31 231 9 3164 42 0 0 chr6 79874380 79874761 -109404793 - L1PA7 LINE L1 -5 6149 5769 383 43 0 0 chr6 79874761 79874808 -109404746 + L1PA7 LINE L1 5699 5745 -409 234 62 0 0 chr6 79876780 79876812 -109402742 + (GA)n Simple_repeat Simple_repeat 1 32 0 234 128 0 0 chr6 79877558 79877597 -109401957 + (TTA)n Simple_repeat Simple_repeat 1 39 0 329 301 98 49 chr6 79877597 79877800 -109401754 - MIR SINE MIR -10 252 40 1134 218 57 82 chr6 79878047 79878601 -109400953 + MER39 LTR ERV1 1 585 0 698 249 74 48 chr6 79878875 79879046 -109400508 + LTR33A LTR ERVL 19 201 -322 1737 42 0 0 chr6 79879046 79879260 -109400294 - L1PA3 LINE L1 0 6155 5942 698 249 74 48 chr6 79879260 79879357 -109400197 + LTR33A LTR ERVL 201 294 -229 517 200 62 41 chr6 79879417 79879562 -109399992 - MER115 DNA AcHobo -11 682 535 313 308 15 52 chr6 79879836 79880045 -109399509 - MER115 DNA AcHobo -159 534 293 577 277 30 0 chr6 79880331 79880497 -109399057 + LTR33A LTR ERVL 353 523 0 585 28 0 0 chr6 79883668 79883739 -109395815 + (TC)n Simple_repeat Simple_repeat 2 72 0 877 201 154 8 chr6 79884399 79884658 -109394896 - MER67D LTR ERV1 0 514 218 4695 159 30 46 chr6 79884679 79886322 -109393232 - L1MA4 LINE L1 -6 6294 4541 4305 181 16 6 chr6 79886320 79887185 -109392369 + L1MA4 LINE L1 3658 4531 -1615 * 566 116 50 83 chr6 79887197 79887318 -109392236 - MER67D LTR ERV1 -300 214 98 13560 149 25 47 chr6 79887318 79889826 -109389728 + Tigger2 DNA MER2_type 1 2452 -266 561 308 32 45 chr6 79891282 79891529 -109388025 + MIR SINE MIR 19 262 0 239 303 13 13 chr6 79892136 79892212 -109387342 - MER2 DNA MER2_type 0 345 270 985 192 6 0 chr6 79892299 79892471 -109387083 - MER2 DNA MER2_type -172 173 1 422 329 49 25 chr6 79894462 79894658 -109384896 + MIR SINE MIR 16 211 -51 887 291 98 20 chr6 79895028 79895385 -109384169 - MLT1J LTR MaLR -126 385 1 21 0 0 0 chr6 79895918 79895939 -109383615 + AT_rich Low_complexity Low_complexity 1 21 0 416 361 76 24 chr6 79897759 79898222 -109381332 + L2 LINE L2 1218 1704 -1610 210 229 33 0 chr6 79898282 79898343 -109381211 - MIR SINE MIR -15 247 185 415 286 146 27 chr6 79898465 79898766 -109380788 - L2 LINE L2 -700 2614 2278 431 301 75 0 chr6 79899265 79899411 -109380143 - MIR SINE MIR -31 231 75 731 254 12 0 chr6 79899455 79899624 -109379930 + MER5B DNA MER1_type 7 177 -1 905 125 19 6 chr6 79900077 79900237 -109379317 - L1MA8 LINE L1 -2 6289 6128 24 32 0 0 chr6 79901379 79901410 -109378144 + AT_rich Low_complexity Low_complexity 1 31 0 304 299 13 0 chr6 79901559 79901636 -109377918 + MIR SINE MIR 64 141 -121 202 243 0 117 chr6 79901754 79901857 -109377697 - MIR SINE MIR 0 262 172 22 0 0 0 chr6 79902598 79902620 -109376934 + AT_rich Low_complexity Low_complexity 1 22 0 240 299 69 14 chr6 79902722 79902866 -109376688 + L1M4 LINE L1 3329 3480 -2666 203 425 0 0 chr6 79902874 79902961 -109376593 - MIR3 SINE MIR -10 198 112 189 0 0 0 chr6 79903195 79903216 -109376338 + (TTGG)n Simple_repeat Simple_repeat 1 21 0 316 268 188 0 chr6 79903317 79903455 -109376099 + L1ME3 LINE L1 5947 6110 -52 417 308 131 39 chr6 79904224 79906215 -109373339 - L1MEd LINE L1 -1788 4341 2157 36 77 0 0 chr6 79906597 79906675 -109372879 + AT_rich Low_complexity Low_complexity 1 78 0 311 138 0 15 chr6 79906682 79906747 -109372807 - L1PA13 LINE L1 -2 6161 6098 589 319 27 30 chr6 79906784 79907154 -109372400 - HAL1 LINE L1 -762 1745 1377 270 0 0 0 chr6 79907154 79907184 -109372370 + (TG)n Simple_repeat Simple_repeat 2 31 0 330 278 80 60 chr6 79907223 79907374 -109372180 - L1MEd LINE L1 -4918 1201 1048 5173 109 19 6 chr6 79908189 79908980 -109370574 - L1PA13 LINE L1 -2 6161 5361 1412 168 0 121 chr6 79912251 79912573 -109366981 + AluSx SINE Alu 1 283 -29 285 244 0 0 chr6 79913105 79913191 -109366363 + GA-rich Low_complexity Low_complexity 1 86 0 22 0 0 0 chr6 79913195 79913217 -109366337 + AT_rich Low_complexity Low_complexity 1 22 0 540 182 20 0 chr6 79915784 79915898 -109363656 - L1ME1 LINE L1 -9 6157 6050 761 293 34 0 chr6 79917322 79917527 -109362027 - MER20 DNA MER1_type -6 213 2 23 0 0 0 chr6 79919973 79919996 -109359558 + AT_rich Low_complexity Low_complexity 1 23 0 2010 52 75 4 chr6 79919998 79920351 -109359203 + AluY SINE Alu 1 372 0 560 222 122 50 chr6 79921132 79921312 -109358242 + MIR SINE MIR 64 256 -6 38 0 0 0 chr6 79921453 79921491 -109358063 + AT_rich Low_complexity Low_complexity 1 38 0 763 119 48 0 chr6 79922382 79922508 -109357046 - L1PA13 LINE L1 0 6163 6032 298 310 110 0 chr6 79923694 79923794 -109355760 + MER5B DNA MER1_type 2 112 -66 21 0 0 0 chr6 79925450 79925471 -109354083 + AT_rich Low_complexity Low_complexity 1 21 0 6239 60 5 1 chr6 79926949 79927744 -109351810 - L1PA7 LINE L1 0 6154 5357 23 0 0 0 chr6 79929208 79929231 -109350323 + AT_rich Low_complexity Low_complexity 1 23 0 227 54 27 0 chr6 79929463 79929500 -109350054 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2436 11 0 0 chr6 79929516 79929795 -109349759 - L1PA2 LINE L1 -2 6153 5875 23 33 0 0 chr6 79929941 79929971 -109349583 + AT_rich Low_complexity Low_complexity 1 30 0 220 229 0 0 chr6 79930037 79930085 -109349469 + A-rich Low_complexity Low_complexity 1 48 0 7845 92 16 3 chr6 79931629 79932738 -109346816 + L1PA7 LINE L1 3687 4810 -1336 6909 60 6 6 chr6 79932738 79933700 -109345854 + L1PA7 LINE L1 5196 6154 0 1633 168 3 39 chr6 79933822 79934132 -109345422 + AluJo SINE Alu 1 299 -13 2006 102 10 51 chr6 79934695 79935008 -109344546 + AluSx SINE Alu 1 300 -12 540 316 38 19 chr6 79935313 79935522 -109344032 + MIR SINE MIR 22 234 -28 194 0 39 0 chr6 79937092 79937118 -109342436 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2058 101 14 7 chr6 79937426 79937722 -109341832 - AluSq SINE Alu -15 298 1 21 36 0 0 chr6 79937732 79937760 -109341794 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr6 79939098 79939122 -109340432 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2207 101 3 0 chr6 79940112 79940400 -109339154 + AluSp SINE Alu 1 289 -24 441 173 346 8 chr6 79941002 79941135 -109338419 + MER5B DNA MER1_type 1 178 0 1878 203 18 50 chr6 79942291 79942749 -109336805 - LTR47B LTR ERVL 0 443 1 224 182 0 18 chr6 79942814 79942869 -109336685 + GA-rich Low_complexity Low_complexity 1 54 0 187 344 0 33 chr6 79942933 79943023 -109336531 + MIR SINE MIR 58 144 -118 526 345 51 30 chr6 79943139 79943435 -109336119 - L3 LINE CR1 -100 1477 1176 281 341 30 22 chr6 79943751 79943886 -109335668 - L3 LINE CR1 -854 723 588 813 213 38 6 chr6 79944500 79944683 -109334871 + MER5A DNA MER1_type 1 189 0 22 0 0 0 chr6 79945252 79945274 -109334280 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr6 79946320 79946359 -109333195 + AT_rich Low_complexity Low_complexity 1 39 0 213 39 0 0 chr6 79947906 79947932 -109331622 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 198 0 0 0 chr6 79948158 79948180 -109331374 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 233 305 219 21 chr6 79949727 79949914 -109329640 - MIR SINE MIR 0 262 40 371 269 123 37 chr6 79951473 79951885 -109327669 + LTR33A LTR ERVL 17 503 -20 230 242 30 30 chr6 79952175 79952241 -109327313 + MIR SINE MIR 155 220 -42 647 319 136 20 chr6 79953160 79953628 -109325926 - L2 LINE L2 -1 3312 2784 3033 20 0 0 chr6 79953661 79954014 -109325540 - L1PA2 LINE L1 -469 5686 5334 4068 17 0 4 chr6 79954014 79954488 -109325066 + L1PA2 LINE L1 5680 6152 -3 183 162 0 0 chr6 79954506 79954543 -109325011 + (TCCA)n Simple_repeat Simple_repeat 4 40 0 594 301 307 11 chr6 79954589 79955247 -109324307 - L2 LINE L2 -650 2664 1812 1749 188 10 0 chr6 79955747 79956045 -109323509 + AluJb SINE Alu 1 301 -11 359 318 8 23 chr6 79956411 79956540 -109323014 + MIR SINE MIR 34 160 -102 25 0 0 0 chr6 79956850 79956875 -109322679 + AT_rich Low_complexity Low_complexity 1 25 0 209 286 91 0 chr6 79961052 79961129 -109318425 + L2 LINE L2 3186 3269 -3 294 311 108 52 chr6 79961547 79961833 -109317721 - L2 LINE L2 -576 2738 2437 1256 180 0 0 chr6 79962093 79962299 -109317255 + AluSg/x SINE Alu 103 308 -4 1655 175 9 25 chr6 79962413 79962728 -109316826 - AluJb SINE Alu -2 310 1 1662 180 24 3 chr6 79963539 79963833 -109315721 + MER39 LTR ERV1 6 305 -402 330 269 0 26 chr6 79964384 79964462 -109315092 - L2 LINE L2 -8 3264 3189 601 218 75 3 chr6 79964707 79964872 -109314682 + MIR SINE MIR 16 198 -62 259 360 151 21 chr6 79964868 79965054 -109314500 - MIR SINE MIR 0 262 53 * 295 382 30 8 chr6 79967094 79967225 -109312329 + L2 LINE L2 3134 3267 -5 193 310 0 86 chr6 79969888 79970004 -109309550 + MIR SINE MIR 23 128 -80 210 71 0 0 chr6 79971276 79971304 -109308250 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 185 341 148 30 chr6 79971357 79971492 -109308062 - L3b LINE CR1 -2 1581 1431 279 282 0 0 chr6 79971613 79971723 -109307831 + GA-rich Low_complexity Low_complexity 2 111 0 192 273 0 0 chr6 79971827 79971871 -109307683 - L3 LINE CR1 -566 1011 968 292 309 41 0 chr6 79971972 79972069 -109307485 - L3 LINE CR1 -552 1025 925 193 309 138 21 chr6 79973432 79973526 -109306028 - MIR SINE MIR -4 258 154 245 398 0 0 chr6 79973569 79973667 -109305887 - MIR SINE MIR -114 148 51 242 322 0 0 chr6 79973729 79973788 -109305766 + L2 LINE L2 3205 3263 -9 180 97 0 0 chr6 79974046 79974077 -109305477 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 622 213 0 0 chr6 79974077 79974185 -109305369 - FLAM_A SINE Alu -33 109 2 228 221 19 58 chr6 79977191 79977295 -109302259 - L1MC4 LINE L1 -1346 6696 6597 322 332 88 88 chr6 79977891 79978210 -109301344 + L2 LINE L2 2946 3264 -8 258 292 42 10 chr6 79978427 79978523 -109301031 - MIR SINE MIR -76 132 34 354 59 0 0 chr6 79978785 79978836 -109300718 - L1PA7 LINE L1 0 6154 6104 516 100 0 0 chr6 79978836 79978916 -109300638 + L1PA4 LINE L1 5954 6033 -122 2026 235 37 68 chr6 79979202 79979848 -109299706 - MER92B LTR ERV1 -1 635 10 1647 164 14 0 chr6 79980174 79980461 -109299093 + AluJb SINE Alu 1 291 -21 1220 147 101 83 chr6 79980594 79980834 -109298720 - MER67C LTR ERV1 -243 271 128 219 103 0 0 chr6 79980834 79980873 -109298681 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1220 147 101 83 chr6 79980873 79981004 -109298550 - MER67C LTR ERV1 -386 128 1 276 407 35 14 chr6 79981561 79981706 -109297848 - L2 LINE L2 -1 3271 3124 2116 172 9 26 chr6 79982122 79982541 -109297013 + MLT2D LTR ERVL 1 412 -2 634 279 76 6 chr6 79982770 79982942 -109296612 - MIR SINE MIR -71 191 8 26 30 0 0 chr6 79984039 79984072 -109295482 + AT_rich Low_complexity Low_complexity 1 33 0 2211 109 0 0 chr6 79984080 79984373 -109295181 - AluSc SINE Alu -16 293 1 21 0 0 0 chr6 79985625 79985646 -109293908 + AT_rich Low_complexity Low_complexity 1 21 0 2341 92 0 0 chr6 79986166 79986461 -109293093 + AluY SINE Alu 1 295 -16 182 302 0 19 chr6 79986616 79986669 -109292885 + L3 LINE CR1 1523 1574 -3 22 0 0 0 chr6 79988063 79988085 -109291469 + AT_rich Low_complexity Low_complexity 1 22 0 2024 100 4 0 chr6 79988415 79988705 -109290849 + AluSc SINE Alu 17 307 0 448 146 218 0 chr6 79988705 79988815 -109290739 - MER47A DNA MER2_type -202 164 31 280 100 0 0 chr6 79988819 79988859 -109290695 + Alu SINE Alu 1 40 -261 181 0 69 0 chr6 79988863 79988892 -109290662 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3474 184 57 127 chr6 79989579 79990441 -109289113 - Charlie1 DNA MER1_type 0 2761 1841 842 157 14 0 chr6 79990441 79990581 -109288973 + FRAM SINE Alu 35 176 0 3474 184 57 127 chr6 79990581 79991133 -109288421 - Charlie1 DNA MER1_type -920 1841 1 436 241 70 44 chr6 79991176 79991446 -109288108 + HAL1 LINE L1 2100 2376 -131 988 290 94 40 chr6 79991479 79991959 -109287595 + L2 LINE L2 2805 3310 -3 312 233 27 0 chr6 79992006 79992079 -109287475 + HAL1 LINE L1 2431 2505 -2 744 160 39 19 chr6 79992336 79992492 -109287062 - L1MA10 LINE L1 -1 6333 6175 332 373 0 9 chr6 79993170 79993280 -109286274 - L2 LINE L2 -1 3271 3163 576 350 90 30 chr6 79993477 79994077 -109285477 - L2 LINE L2 -635 2679 2044 688 303 93 24 chr6 79994654 79995030 -109284524 + MLT1J LTR MaLR 100 501 -10 1042 168 5 0 chr6 79995182 79995379 -109284175 + L1PB1 LINE L1 3 200 -6663 9434 154 40 4 chr6 79995379 79998453 -109281101 + L1PB1 LINE L1 634 3934 -2928 5718 32 0 0 chr6 79998479 79999194 -109280360 - L1PA3 LINE L1 -916 5230 4516 7583 30 1 0 chr6 79999207 80000105 -109279449 + L1PA3 LINE L1 5254 6152 -3 1964 213 2 7 chr6 80000121 80000577 -109278977 + L1PB1 LINE L1 4226 4679 -2183 1174 123 7 0 chr6 80000577 80000732 -109278822 + AluY SINE Alu 1 156 -155 5166 148 15 16 chr6 80000833 80002249 -109277305 + L1PB1 LINE L1 5387 6800 -67 437 318 144 10 chr6 80002594 80002789 -109276765 + L3 LINE CR1 88 308 -1269 2510 57 3 0 chr6 80004246 80004543 -109275011 - AluY SINE Alu -13 298 1 306 0 0 0 chr6 80004916 80004950 -109274604 + (TAA)n Simple_repeat Simple_repeat 1 34 0 236 325 26 26 chr6 80004984 80005135 -109274419 - MIR SINE MIR -25 237 87 1520 202 59 34 chr6 80005312 80005668 -109273886 - MLT1A1 LTR MaLR 0 365 1 358 317 48 11 chr6 80007220 80007406 -109272148 - L1MC/D LINE L1 -2016 5792 5600 221 276 17 0 chr6 80008219 80008277 -109271277 + (CATA)n Simple_repeat Simple_repeat 3 61 0 1785 190 19 16 chr6 80009146 80009509 -109270045 - MLT1A1 LTR MaLR 0 365 2 246 230 20 40 chr6 80009514 80009614 -109269940 - MLT1J LTR MaLR 0 511 414 540 243 68 23 chr6 80009768 80009945 -109269609 - MLT1J LTR MaLR -318 193 9 464 193 36 36 chr6 80010174 80010314 -109269240 + L1MA10 LINE L1 6188 6327 -7 292 308 0 9 chr6 80014193 80014300 -109265254 - MER94 DNA DNA -28 106 1 447 277 54 15 chr6 80014554 80014684 -109264870 + L2 LINE L2 3177 3311 -2 1695 123 45 0 chr6 80015277 80015397 -109264157 - AluSp SINE Alu -59 254 141 330 26 0 0 chr6 80015397 80015436 -109264118 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1695 123 45 0 chr6 80015436 80015558 -109263996 - AluSp SINE Alu -172 141 1 349 311 85 65 chr6 80016051 80016311 -109263243 - MLT1K LTR MaLR -163 425 161 211 211 0 0 chr6 80017455 80017507 -109262047 + T-rich Low_complexity Low_complexity 1 52 0 4833 98 20 172 chr6 80017508 80018633 -109260921 - SVA Other Other -1 1385 432 1624 152 81 12 chr6 80018676 80019083 -109260471 - SVA Other Other -518 868 434 4781 135 38 15 chr6 80019128 80019975 -109259579 - SVA Other Other -518 868 3 355 64 0 0 chr6 80019978 80020025 -109259529 - AluSg/x SINE Alu -175 125 79 1961 88 69 0 chr6 80020640 80020902 -109258652 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr6 80020902 80020929 -109258625 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1878 207 50 59 chr6 80021224 80021931 -109257623 - MER92B LTR ERV1 0 636 1 639 211 111 0 chr6 80022018 80022189 -109257365 + MLT1E1 LTR MaLR 5 194 -460 198 91 0 0 chr6 80022473 80022506 -109257048 + (T)n Simple_repeat Simple_repeat 1 33 0 285 336 47 0 chr6 80022618 80022725 -109256829 + MIR SINE MIR 80 191 -71 21 57 0 0 chr6 80025192 80025227 -109254327 + AT_rich Low_complexity Low_complexity 1 35 0 40047 41 23 2 chr6 80025407 80031436 -109248118 - L1PA2 LINE L1 0 6155 1 1921 228 72 0 chr6 80031965 80032439 -109247115 + Tigger6a DNA MER2_type 32 539 -544 772 364 38 18 chr6 80032440 80032888 -109246666 + L1M3b LINE L1 1217 1673 -5823 4249 252 37 23 chr6 80032946 80033803 -109245751 + L1M3b LINE L1 2007 2839 -4726 1862 180 0 16 chr6 80033803 80034114 -109245440 + AluSx SINE Alu 1 306 -6 4249 252 37 23 chr6 80034114 80034925 -109244629 + L1M3b LINE L1 2839 3637 -3928 2120 158 5 44 chr6 80034986 80035366 -109244188 + Tigger1 DNA MER2_type 36 400 -2018 1703 91 0 0 chr6 80035366 80035585 -109243969 + AluY SINE Alu 93 311 0 2120 158 5 44 chr6 80035585 80035614 -109243940 + Tigger1 DNA MER2_type 400 429 -1989 742 129 0 0 chr6 80035616 80035740 -109243814 + L1MA6 LINE L1 5564 5687 -613 2731 183 44 31 chr6 80035740 80036287 -109243267 - MER52A LTR ERV1 0 1755 1202 2714 113 119 64 chr6 80036290 80036949 -109242605 + LTR12 LTR ERV1 1 579 -135 1772 195 51 68 chr6 80036949 80037521 -109242033 - MER52A LTR ERV1 -439 839 293 4500 116 24 7 chr6 80037521 80038227 -109241327 + LTR30 LTR ERV1 4 721 -1 1772 195 51 68 chr6 80038227 80038515 -109241039 - MER52A LTR ERV1 -985 293 1 2003 191 17 9 chr6 80038515 80038976 -109240578 + L1MA6 LINE L1 5684 6148 -152 * 6172 200 6 1 chr6 80038967 80040283 -109239271 - L1PA15 LINE L1 -750 5396 4074 4789 123 31 14 chr6 80040281 80041197 -109238357 + L1PA15 LINE L1 5396 6165 0 * 2142 202 40 18 chr6 80041207 80041751 -109237803 + Tigger6a DNA MER2_type 528 1083 0 263 259 13 103 chr6 80042717 80042941 -109236613 - L1ME4a LINE L1 -78 6043 5840 759 182 68 42 chr6 80043007 80043306 -109236248 + MLT1A1 LTR MaLR 1 363 -2 325 295 116 32 chr6 80043308 80043715 -109235839 - L1ME4a LINE L1 -372 5749 5309 30 69 0 0 chr6 80043792 80043850 -109235704 + AT_rich Low_complexity Low_complexity 1 58 0 2421 56 7 10 chr6 80043866 80044171 -109235383 - AluY SINE Alu -7 304 1 397 248 44 44 chr6 80044436 80044739 -109234815 - L1ME LINE L1 -5168 902 465 234 0 0 0 chr6 80045187 80045213 -109234341 + (T)n Simple_repeat Simple_repeat 1 26 0 436 278 8 8 chr6 80045236 80045362 -109234192 - L1ME LINE L1 -5617 453 328 26 64 0 0 chr6 80045708 80045755 -109233799 + AT_rich Low_complexity Low_complexity 1 47 0 189 0 0 0 chr6 80046355 80046376 -109233178 + (TG)n Simple_repeat Simple_repeat 2 22 0 2583 116 30 14 chr6 80046411 80046849 -109232705 + L1PA16 LINE L1 5642 6086 -80 23 0 0 0 chr6 80047238 80047261 -109232293 + AT_rich Low_complexity Low_complexity 1 23 0 204 392 17 23 chr6 80047295 80047471 -109232083 - MER5B DNA MER1_type 0 178 4 304 321 29 21 chr6 80047498 80047638 -109231916 - L1MEd LINE L1 -5003 1116 976 1271 228 24 21 chr6 80047924 80048213 -109231341 + AluJo SINE Alu 23 312 0 21 0 0 0 chr6 80048364 80048385 -109231169 + AT_rich Low_complexity Low_complexity 1 21 0 222 392 0 25 chr6 80048563 80048642 -109230912 - L2 LINE L2 -62 3210 3134 630 208 173 4 chr6 80049496 80049727 -109229827 + L1MC4a LINE L1 5637 5906 -1902 420 20 0 0 chr6 80049794 80049843 -109229711 + (CA)n Simple_repeat Simple_repeat 2 50 0 31 68 0 0 chr6 80049934 80049993 -109229561 + AT_rich Low_complexity Low_complexity 1 59 0 231 114 0 0 chr6 80050342 80050377 -109229177 + (TG)n Simple_repeat Simple_repeat 2 36 0 1784 196 16 11 chr6 80051219 80051582 -109227972 + MLT1A1 LTR MaLR 1 365 0 202 291 55 0 chr6 80051630 80051685 -109227869 + L2 LINE L2 3210 3267 -5 225 256 189 0 chr6 80051705 80051795 -109227759 + MIR SINE MIR 66 172 -90 841 145 0 0 chr6 80052317 80052441 -109227113 - AluSg/x SINE Alu -12 300 177 1644 121 4 13 chr6 80052448 80052679 -109226875 - AluSg SINE Alu -78 232 4 6954 129 37 32 chr6 80052888 80054165 -109225389 + pTR5 LTR ERV1 743 2025 -413 342 183 0 0 chr6 80054165 80054236 -109225318 + LTR30 LTR ERV1 544 614 -108 24663 94 29 8 chr6 80054236 80058129 -109221425 + HERV9 LTR ERV1 17 3681 -1935 4175 103 3 21 chr6 80058147 80059035 -109220519 + HERV9 LTR ERV1 504 8390 -9 1562 106 15 64 chr6 80059134 80059398 -109220156 + LTR12 LTR ERV1 308 558 -156 936 289 126 14 chr6 80059450 80059806 -109219748 + L2 LINE L2 1371 1766 -1548 2193 231 78 44 chr6 80059865 80060554 -109219000 - MER21B LTR ERV1 -60 803 84 2337 145 62 7 chr6 80060554 80060960 -109218594 + MSTA LTR MaLR 1 428 0 2193 231 78 44 chr6 80060960 80061036 -109218518 - MER21B LTR ERV1 -779 84 12 625 241 33 69 chr6 80061070 80061159 -109218395 + L2 LINE L2 1771 1862 -1452 2197 133 0 0 chr6 80061159 80061461 -109218093 - AluSg1 SINE Alu -7 302 1 625 241 33 69 chr6 80061461 80061616 -109217938 + L2 LINE L2 1862 2006 -1308 922 246 85 0 chr6 80061640 80061912 -109217642 + L2 LINE L2 2466 2760 -554 189 216 34 114 chr6 80061955 80062043 -109217511 + L2 LINE L2 2854 2934 -338 23 33 0 0 chr6 80063684 80063714 -109215840 + AT_rich Low_complexity Low_complexity 1 30 0 991 237 33 27 chr6 80063751 80065292 -109214262 + L1MC/D LINE L1 3773 5495 -743 207 69 0 0 chr6 80065489 80065518 -109214036 + (CA)n Simple_repeat Simple_repeat 2 30 0 250 270 67 17 chr6 80065896 80066074 -109213480 + L1ME LINE L1 5155 5341 -805 41020 49 2 1 chr6 80066075 80072240 -109207314 + L1PA4 LINE L1 3 6173 0 492 281 33 60 chr6 80072246 80072548 -109207006 + L1ME LINE L1 5315 5608 -556 541 209 78 31 chr6 80073102 80073293 -109206261 + L1ME LINE L1 5605 5804 -366 630 216 166 35 chr6 80074138 80074481 -109205073 + Charlie4a DNA MER1_type 29 416 -92 576 256 45 11 chr6 80074532 80074708 -109204846 - MIR SINE MIR -67 195 14 2615 89 17 30 chr6 80075249 80075652 -109203902 - L1PA13 LINE L1 -8 6155 5758 406 219 24 0 chr6 80077140 80077222 -109202332 + L2 LINE L2 3230 3313 0 416 286 148 37 chr6 80077571 80077760 -109201794 - MIR SINE MIR -49 213 4 750 301 45 12 chr6 80077797 80078043 -109201511 - MIR SINE MIR 0 262 9 1604 138 53 23 chr6 80078371 80078568 -109200986 + MER44D DNA MER2_type 28 218 -2273 2963 107 62 0 chr6 80078568 80079006 -109200548 + MER4C LTR ERV1 1 465 0 1604 138 53 23 chr6 80079006 80079112 -109200442 + MER44D DNA MER2_type 218 609 0 3834 162 11 8 chr6 80079247 80079896 -109199658 + L1M3f LINE L1 1240 1890 -4675 2228 230 44 58 chr6 80079898 80081230 -109198324 + L1M3f LINE L1 1974 3429 -4136 40308 40 22 0 chr6 80081230 80087253 -109192301 + L1PA2 LINE L1 1 6155 0 11222 213 27 12 chr6 80087263 80089566 -109189988 + L1M3f LINE L1 3379 5804 -1761 1710 179 28 14 chr6 80089566 80089857 -109189697 + AluSx SINE Alu 2 296 -16 11222 213 27 12 chr6 80089857 80090539 -109189015 + L1M3f LINE L1 5804 6474 -1091 1606 202 48 14 chr6 80090897 80091249 -109188305 + MLT2D LTR ERVL 1 364 -50 630 48 48 40 chr6 80091250 80091374 -109188180 + (TAGA)n Simple_repeat Simple_repeat 3 127 0 244 182 0 0 chr6 80091375 80091419 -109188135 + MLT2D LTR ERVL 418 461 -3 198 0 0 0 chr6 80091619 80091641 -109187913 + (TG)n Simple_repeat Simple_repeat 2 23 0 416 279 139 0 chr6 80091979 80092108 -109187446 + MER69 DNA AcHobo 1 147 -2379 389 350 125 50 chr6 80092225 80092479 -109187075 + L3 LINE CR1 711 944 -633 599 208 8 8 chr6 80092479 80092609 -109186945 + FLAM_C SINE Alu 1 130 -3 2368 170 46 64 chr6 80092610 80093174 -109186380 - MLT2B3 LTR ERVL 0 554 1 389 350 125 50 chr6 80093174 80093502 -109186052 + L3 LINE CR1 943 1339 -238 443 255 161 37 chr6 80093766 80093927 -109185627 - MER5A DNA MER1_type 0 189 9 356 273 117 8 chr6 80093990 80094118 -109185436 + MLT1I LTR MaLR 197 338 -71 774 175 26 26 chr6 80094672 80094826 -109184728 + L1MA9 LINE L1 6121 6274 -38 26 50 0 0 chr6 80097127 80097167 -109182387 + AT_rich Low_complexity Low_complexity 1 40 0 3197 256 30 18 chr6 80097347 80098241 -109181313 + L1PA13 LINE L1 1340 2244 -4543 1640 125 57 37 chr6 80098249 80098546 -109181008 + THE1B LTR MaLR 1 303 -61 189 0 0 0 chr6 80098595 80098616 -109180938 + (TA)n Simple_repeat Simple_repeat 1 21 0 330 26 0 0 chr6 80098650 80098689 -109180865 + (TC)n Simple_repeat Simple_repeat 2 40 0 547 92 53 20 chr6 80098689 80098841 -109180713 + (TA)n Simple_repeat Simple_repeat 1 157 0 1232 231 0 0 chr6 80098846 80099101 -109180453 + L1PA16 LINE L1 1531 1785 -5002 * 6471 229 18 35 chr6 80099100 80101017 -109178537 + L1 LINE L1 3095 4979 -1818 * 42289 37 21 1 chr6 80101011 80107037 -109172517 + L1PA2 LINE L1 6 6154 -1 227 296 41 20 chr6 80107076 80107174 -109172380 - MIR3 SINE MIR -31 177 78 5438 176 48 10 chr6 80107553 80109333 -109170221 + L1PA16 LINE L1 4967 6817 0 27 49 0 0 chr6 80109353 80109394 -109170160 + AT_rich Low_complexity Low_complexity 1 41 0 328 269 43 1 chr6 80109705 80109812 -109169742 + MER58 DNA MER1_type 1 94 -121 225 246 82 0 chr6 80109817 80109878 -109169676 + MER58 DNA MER1_type 2355 2420 0 732 273 113 31 chr6 80109891 80110401 -109169153 - L1ME1 LINE L1 -222 5944 5399 333 248 96 24 chr6 80110414 80110539 -109169015 + LTR41 LTR ERVL 7 140 -633 518 219 146 29 chr6 80110814 80111019 -109168535 + LTR41 LTR ERVL 567 795 0 621 115 29 14 chr6 80111105 80111244 -109168310 + (TAGA)n Simple_repeat Simple_repeat 4 144 0 741 305 100 31 chr6 80111246 80112270 -109167284 - L1ME1 LINE L1 -842 5304 4211 366 23 0 0 chr6 80112892 80112935 -109166619 + (TG)n Simple_repeat Simple_repeat 1 43 0 318 312 126 21 chr6 80112939 80113320 -109166234 + L1ME4a LINE L1 5503 5923 -198 566 222 170 13 chr6 80113356 80113509 -109166045 - MIR SINE MIR -25 237 61 395 232 20 0 chr6 80113544 80113643 -109165911 + L1ME4a LINE L1 6000 6100 -21 2111 199 63 59 chr6 80115138 80115680 -109163874 - MLT1E LTR MaLR -5 588 45 260 243 135 0 chr6 80116536 80116610 -109162944 - MER5B DNA MER1_type -94 84 1 490 296 49 40 chr6 80116616 80116839 -109162715 + MIR SINE MIR 23 247 -15 555 328 115 42 chr6 80117069 80117586 -109161968 - L2 LINE L2 -46 3267 2699 1533 179 62 0 chr6 80117586 80117922 -109161632 - L1MB4 LINE L1 -1 6179 5823 555 328 115 42 chr6 80117922 80118029 -109161525 - L2 LINE L2 -614 2699 2601 249 33 0 0 chr6 80118098 80118128 -109161426 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 399 73 0 0 chr6 80118127 80118182 -109161372 + (TG)n Simple_repeat Simple_repeat 2 56 0 351 279 23 8 chr6 80118353 80118482 -109161072 - MARNA DNA Mariner -431 155 25 1429 243 96 46 chr6 80118800 80119365 -109160189 + MLT1G1 LTR MaLR 3 595 0 1830 161 16 0 chr6 80121031 80121336 -109158218 + MER58B DNA MER1_type 31 340 -1 21 0 0 0 chr6 80121506 80121527 -109158027 + AT_rich Low_complexity Low_complexity 1 21 0 841 123 15 0 chr6 80121602 80121732 -109157822 - FRAM SINE Alu -6 170 39 253 374 22 7 chr6 80121761 80121900 -109157654 - MIR3 SINE MIR -13 195 55 1064 241 0 0 chr6 80122038 80122241 -109157313 + MER58A DNA MER1_type 13 215 -9 220 344 28 75 chr6 80122284 80122305 -109157249 + L2 LINE L2 2835 2855 -417 1018 284 86 43 chr6 80122305 80122794 -109156760 + MLT1J LTR MaLR 1 510 -1 220 344 28 75 chr6 80122794 80123025 -109156529 + L2 LINE L2 2855 3075 -197 25 31 0 0 chr6 80123177 80123209 -109156345 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 80123365 80123387 -109156167 + AT_rich Low_complexity Low_complexity 1 22 0 893 216 51 76 chr6 80123466 80123645 -109155909 - MLT1A1 LTR MaLR 0 365 183 4665 114 34 4 chr6 80123645 80123988 -109155566 - L1PB1 LINE L1 -8 6143 5812 243 0 0 0 chr6 80123988 80124015 -109155539 + (TA)n Simple_repeat Simple_repeat 1 27 0 4665 114 34 4 chr6 80124015 80124383 -109155171 - L1PB1 LINE L1 -339 5812 5411 893 216 51 76 chr6 80124383 80124647 -109154907 - MLT1A1 LTR MaLR -182 183 1 3371 153 30 48 chr6 80125829 80125961 -109153593 - MER67C LTR ERV1 0 710 577 2113 110 27 0 chr6 80125961 80126261 -109153293 - AluSc SINE Alu -1 308 1 3371 153 30 48 chr6 80126261 80126851 -109152703 - MER67C LTR ERV1 -133 577 1 193 313 15 99 chr6 80127085 80127216 -109152338 + MER5A DNA MER1_type 70 189 0 424 346 85 5 chr6 80128346 80128557 -109150997 - MIR SINE MIR -7 255 28 260 248 56 16 chr6 80128917 80129042 -109150512 - Charlie7 DNA MER1_type -246 2366 2237 639 249 80 32 chr6 80129092 80129341 -109150213 - Charlie7 DNA MER1_type -526 2086 1826 847 102 0 48 chr6 80129341 80129488 -109150066 - L1PA13 LINE L1 0 6163 6024 870 242 113 35 chr6 80129571 80130033 -109149521 - Charlie7 DNA MER1_type -2049 563 66 1209 195 38 0 chr6 80130248 80130458 -109149096 + AluJb SINE Alu 14 231 -81 276 224 186 13 chr6 80130508 80130664 -109148890 - MLT1J LTR MaLR -31 480 298 367 254 27 27 chr6 80132663 80132773 -109146781 - MIR SINE MIR -85 177 68 24 67 0 0 chr6 80134209 80134254 -109145300 + AT_rich Low_complexity Low_complexity 1 45 0 236 100 25 0 chr6 80134773 80134813 -109144741 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 2429 62 3 46 chr6 80134920 80135244 -109144310 - AluY SINE Alu -1 310 1 725 220 79 6 chr6 80135406 80135583 -109143971 - L1ME3 LINE L1 0 6162 5973 519 253 11 22 chr6 80135582 80135760 -109143794 - L1M4 LINE L1 -1404 4742 4567 * 1905 225 87 42 chr6 80135800 80136568 -109142986 - L1M4 LINE L1 -1542 4604 3802 2044 132 0 0 chr6 80136893 80137180 -109142374 - AluSx SINE Alu -21 291 5 255 262 0 9 chr6 80137572 80137679 -109141875 + (TA)n Simple_repeat Simple_repeat 1 106 0 347 41 20 0 chr6 80138120 80138169 -109141385 + (CA)n Simple_repeat Simple_repeat 2 51 0 1319 326 127 11 chr6 80138527 80139474 -109140080 + L2 LINE L2 2205 3256 -57 2623 170 68 53 chr6 80140436 80140982 -109138572 + MLT2B3 LTR ERVL 1 554 0 1944 164 20 0 chr6 80141349 80141690 -109137864 + MER7A DNA MER2_type 1 346 0 452 330 78 58 chr6 80141732 80142114 -109137440 + L3b LINE CR1 1108 1497 -86 4787 10 0 0 chr6 80142173 80142799 -109136755 - L1PA2 LINE L1 -357 5798 5173 2897 21 0 0 chr6 80142799 80143170 -109136384 + L1PA2 LINE L1 5805 6178 0 717 272 80 30 chr6 80145040 80145341 -109134213 - MLT1K LTR MaLR 0 588 273 395 279 0 6 chr6 80145675 80145847 -109133707 + CT-rich Low_complexity Low_complexity 1 171 0 31268 108 13 63 chr6 80146040 80152508 -109127046 + L1PA7 LINE L1 12 6148 -6 377 275 61 102 chr6 80152508 80152821 -109126733 - HAL1 LINE L1 -1734 773 474 819 10 0 89 chr6 80152976 80153272 -109126282 + (TA)n Simple_repeat Simple_repeat 1 269 0 1760 200 114 12 chr6 80153359 80153779 -109125775 - MLT1C LTR MaLR 0 467 5 192 221 0 35 chr6 80155774 80155860 -109123694 + CT-rich Low_complexity Low_complexity 1 83 0 479 223 85 15 chr6 80155871 80156001 -109123553 + L2 LINE L2 3171 3309 -4 200 243 168 37 chr6 80156146 80156253 -109123301 - L2 LINE L2 -101 3212 3092 2170 177 26 26 chr6 80156730 80157287 -109122267 + MLT2A2 LTR ERVL 1 554 0 1167 193 79 0 chr6 80158294 80158548 -109121006 - MER58B DNA MER1_type -1 340 67 246 254 0 0 chr6 80158886 80158953 -109120601 + (TA)n Simple_repeat Simple_repeat 1 67 0 204 97 0 0 chr6 80159711 80159742 -109119812 + (TC)n Simple_repeat Simple_repeat 2 32 0 374 279 12 85 chr6 80159935 80160100 -109119454 + Charlie8 DNA MER1_type 1 153 -2264 252 233 109 52 chr6 80160100 80160207 -109119347 + MIR SINE MIR 51 154 -55 329 212 24 42 chr6 80160249 80160414 -109119140 + (TTATA)n Simple_repeat Simple_repeat 5 166 0 289 342 27 0 chr6 80160424 80160535 -109119019 + MIR SINE MIR 147 260 -2 1948 132 24 0 chr6 80161035 80161324 -109118230 + AluSx SINE Alu 1 296 -16 426 86 37 0 chr6 80161324 80161405 -109118149 + (TA)n Simple_repeat Simple_repeat 1 84 0 28 48 0 0 chr6 80161424 80161466 -109118088 + AT_rich Low_complexity Low_complexity 1 42 0 218 280 27 0 chr6 80161501 80161576 -109117978 + (TATATG)n Simple_repeat Simple_repeat 5 81 0 525 286 81 49 chr6 80161641 80162145 -109117409 + L1ME LINE L1 5256 5779 -342 986 301 112 7 chr6 80163293 80163898 -109115656 + L1MC4a LINE L1 5254 5922 -1886 893 268 55 0 chr6 80163975 80164210 -109115344 - MIR SINE MIR -3 259 12 459 87 0 0 chr6 80164735 80164804 -109114750 + (TG)n Simple_repeat Simple_repeat 2 70 0 395 284 85 34 chr6 80165110 80165286 -109114268 - MIR SINE MIR -67 195 11 2502 79 0 0 chr6 80165662 80165967 -109113587 + AluSp SINE Alu 1 305 -8 318 50 0 0 chr6 80166550 80166590 -109112964 + (GA)n Simple_repeat Simple_repeat 1 40 0 25 51 0 0 chr6 80167913 80167952 -109111602 + AT_rich Low_complexity Low_complexity 1 39 0 561 293 120 0 chr6 80168050 80168292 -109111262 - L1MC4a LINE L1 -1834 5974 5704 804 62 0 0 chr6 80168890 80168986 -109110568 + AluY SINE Alu 2 97 -221 1448 88 0 16 chr6 80169217 80169411 -109110143 + AluSc SINE Alu 113 303 -6 803 231 62 4 chr6 80169595 80169837 -109109717 + MER112 DNA MER1_type 1 256 0 779 196 0 6 chr6 80170101 80170280 -109109274 + GA-rich Low_complexity Low_complexity 3 180 0 622 287 97 0 chr6 80172029 80172245 -109107309 + HAL1 LINE L1 317 553 -1954 509 328 76 66 chr6 80172483 80173074 -109106480 + L1MA4 LINE L1 3589 4185 -1961 2855 184 40 17 chr6 80173538 80174185 -109105369 + L1MA4 LINE L1 4742 5403 -743 1378 149 23 0 chr6 80174186 80174447 -109105107 + L1MA4 LINE L1 6033 6299 -1 2382 53 3 0 chr6 80174658 80174943 -109104611 + AluY SINE Alu 1 286 -25 420 20 0 0 chr6 80174943 80174992 -109104562 + (CA)n Simple_repeat Simple_repeat 2 50 0 255 152 0 0 chr6 80175444 80175490 -109104064 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 896 231 65 5 chr6 80175556 80175755 -109103799 - MER58A DNA MER1_type -12 212 2 322 214 41 10 chr6 80175777 80175875 -109103679 + L1ME LINE L1 5559 5659 -462 703 314 21 0 chr6 80176103 80176294 -109103260 + MIR SINE MIR 11 205 -57 2069 182 8 3 chr6 80176300 80176663 -109102891 - MLT1A1 LTR MaLR 0 365 1 24 32 0 0 chr6 80176779 80176810 -109102744 + AT_rich Low_complexity Low_complexity 1 31 0 2239 104 0 10 chr6 80176888 80177185 -109102369 - AluSx SINE Alu -18 294 1 1870 150 0 0 chr6 80177698 80178004 -109101550 - L1P LINE L1 -915 5231 4926 1744 96 0 4 chr6 80178003 80178253 -109101301 + L1P4 LINE L1 5571 5819 -344 * 1672 163 58 30 chr6 80178289 80178652 -109100902 + THE1C LTR MaLR 3 375 0 202 281 35 0 chr6 80178700 80178757 -109100797 - L2 LINE L2 0 3313 3255 251 206 15 59 chr6 80178883 80178951 -109100603 - L2 LINE L2 -4 3268 3204 363 299 0 36 chr6 80179410 80179577 -109099977 + (TA)n Simple_repeat Simple_repeat 2 162 0 2324 181 38 5 chr6 80180583 80181009 -109098545 - MLT1C LTR MaLR -2 465 26 857 193 108 47 chr6 80181952 80182092 -109097462 - MLT1E3 LTR MaLR 0 624 465 2349 155 28 35 chr6 80182092 80182549 -109097005 - MSTB2 LTR MaLR 0 457 4 857 193 108 47 chr6 80182549 80182621 -109096933 - MLT1E3 LTR MaLR -159 465 399 760 205 102 65 chr6 80182630 80182923 -109096631 - MLT1E3 LTR MaLR -316 308 5 314 255 71 10 chr6 80183204 80183302 -109096252 + MIR SINE MIR 109 212 -50 297 280 15 61 chr6 80183908 80184040 -109095514 - MIR SINE MIR -5 257 132 24 32 0 0 chr6 80184046 80184077 -109095477 + AT_rich Low_complexity Low_complexity 1 31 0 496 294 136 9 chr6 80185373 80185456 -109094098 - MIR SINE MIR 0 262 191 2217 103 7 0 chr6 80185456 80185756 -109093798 - AluSq SINE Alu -11 302 1 496 294 136 9 chr6 80185756 80185893 -109093661 - MIR SINE MIR -71 191 14 1164 204 181 38 chr6 80186057 80186214 -109093340 - MLT1F1 LTR MaLR -175 392 259 2276 101 3 13 chr6 80186214 80186530 -109093024 + AluSp SINE Alu 1 313 0 1164 204 181 38 chr6 80186530 80186715 -109092839 - MLT1F1 LTR MaLR -308 259 1 2959 202 64 5 chr6 80186981 80187559 -109091995 - LTR18B LTR ERVL -1 613 2 3990 164 77 0 chr6 80187564 80188291 -109091263 - LTR39 LTR ERV1 0 783 1 934 215 49 0 chr6 80188616 80188821 -109090733 - MER20 DNA MER1_type -4 215 1 2045 130 0 26 chr6 80189211 80189518 -109090036 - AluSx SINE Alu -13 299 1 494 265 27 20 chr6 80189539 80189686 -109089868 - MIR SINE MIR -10 252 105 1008 202 65 4 chr6 80192219 80192467 -109087087 + L1MA7 LINE L1 5954 6216 -75 949 166 31 0 chr6 80192521 80192684 -109086870 + FAM SINE Alu 1 168 -7 388 224 15 161 chr6 80192791 80192919 -109086635 + L1ME4a LINE L1 5710 5799 -322 1564 95 5 0 chr6 80192919 80193130 -109086424 + L1PA8 LINE L1 5949 6160 -12 388 224 15 161 chr6 80193130 80193206 -109086348 + L1ME4a LINE L1 5799 5884 -237 597 185 0 0 chr6 80193336 80193455 -109086099 + (TG)n Simple_repeat Simple_repeat 1 119 0 2819 268 90 44 chr6 80193679 80194759 -109084795 + L1ME3A LINE L1 3185 4396 -1750 373 164 0 0 chr6 80194759 80194826 -109084728 + L1MC1 LINE L1 6267 6333 0 2819 268 90 44 chr6 80194826 80195683 -109083871 + L1ME3A LINE L1 4396 5212 -934 632 275 25 37 chr6 80195693 80195937 -109083617 + L1MCb LINE L1 8 248 -5797 * 5261 168 117 68 chr6 80195931 80196376 -109083178 + L1MC3 LINE L1 6183 6605 -1180 1996 162 36 6 chr6 80196376 80196740 -109082814 + THE1C LTR MaLR 1 375 0 5261 168 117 68 chr6 80196740 80197180 -109082374 + L1MC3 LINE L1 6605 7022 -763 290 221 26 13 chr6 80197180 80197257 -109082297 + MLT1F1 LTR MaLR 33 110 -457 5261 168 117 68 chr6 80197257 80197821 -109081733 + L1MC3 LINE L1 7022 7784 -1 614 247 88 46 chr6 80197831 80198219 -109081335 + L1ME3A LINE L1 5208 5606 -564 1451 219 71 30 chr6 80198236 80198674 -109080880 + L1ME3A LINE L1 5706 6161 -9 761 230 11 11 chr6 80198688 80198847 -109080707 + L1MC4a LINE L1 5427 5588 -2220 1775 154 59 59 chr6 80198847 80199237 -109080317 + MLT1B LTR MaLR 1 390 0 761 230 11 11 chr6 80199237 80199251 -109080303 + L1MC4a LINE L1 5587 5600 -2208 25 31 0 0 chr6 80199366 80199398 -109080156 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chr6 80199424 80199453 -109080101 + AT_rich Low_complexity Low_complexity 1 29 0 280 261 14 0 chr6 80199565 80199634 -109079920 + L1MC4a LINE L1 5596 5665 -2143 360 253 139 30 chr6 80199693 80199930 -109079624 + L1MC4a LINE L1 6076 6338 -1470 22 0 0 0 chr6 80200168 80200190 -109079364 + AT_rich Low_complexity Low_complexity 1 22 0 1609 233 47 21 chr6 80200214 80200643 -109078911 + LTR40b LTR ERVL 21 460 -2 1923 221 84 48 chr6 80200662 80201378 -109078176 + L1MC5 LINE L1 6671 7412 -549 4780 201 52 97 chr6 80201461 80202515 -109077039 - HERVL32 LTR ERVL -504 2914 1950 5199 114 6 9 chr6 80202515 80203297 -109076257 + LTR17 LTR ERV1 1 780 0 4780 201 52 97 chr6 80203297 80203777 -109075777 - HERVL32 LTR ERVL -1468 1950 1450 2160 114 37 0 chr6 80204157 80204456 -109075098 + AluSg SINE Alu 1 310 0 1621 314 13 2 chr6 80204884 80205428 -109074126 - HERVI LTR ERV1 -135 7650 7101 303 238 213 19 chr6 80205428 80205588 -109073966 + L1MC5 LINE L1 7723 7913 -48 24 0 0 0 chr6 80205807 80205831 -109073723 + AT_rich Low_complexity Low_complexity 1 24 0 448 175 10 62 chr6 80206564 80206643 -109072911 + MER53 DNA DNA 2 77 -112 375 23 0 0 chr6 80206643 80206687 -109072867 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 448 175 10 62 chr6 80206687 80206704 -109072850 + MER53 DNA DNA 77 93 -96 372 207 0 0 chr6 80206758 80206840 -109072714 + MER53 DNA DNA 108 189 0 313 230 270 34 chr6 80207220 80207368 -109072186 - MER5A DNA MER1_type -3 186 4 2387 54 0 14 chr6 80207633 80207930 -109071624 + AluY SINE Alu 1 293 -18 2709 159 71 56 chr6 80207936 80208539 -109071015 - LTR9 LTR ERV1 0 612 1 1976 171 32 4 chr6 80208734 80209236 -109070318 + LTR35 LTR ERV1 63 618 0 4908 151 33 14 chr6 80209963 80211114 -109068440 + L1MA8 LINE L1 5020 6185 -106 1685 199 6 17 chr6 80211260 80211622 -109067932 - LTR60 LTR ERV1 0 586 229 651 153 31 143 chr6 80211622 80211709 -109067845 - LTR60 LTR ERV1 -307 279 225 2368 90 0 10 chr6 80211709 80212021 -109067533 - AluSc SINE Alu 0 309 1 651 153 31 143 chr6 80212021 80212129 -109067425 - LTR60 LTR ERV1 -361 225 106 407 243 0 10 chr6 80212166 80212269 -109067285 - LTR60 LTR ERV1 -479 107 6 565 124 38 0 chr6 80212269 80212374 -109067180 + L1MA8 LINE L1 6178 6286 -5 2294 104 0 3 chr6 80212578 80212876 -109066678 + AluSq SINE Alu 1 297 -16 527 227 8 132 chr6 80213901 80214143 -109065411 + L2 LINE L2 2511 2722 -592 2532 211 74 72 chr6 80214165 80215345 -109064209 + L1MDa LINE L1 19 1458 -5082 2415 74 0 0 chr6 80215345 80215644 -109063910 + AluY SINE Alu 3 301 -10 2532 211 74 72 chr6 80215644 80216094 -109063460 + L1MDa LINE L1 1458 1906 -4634 242 29 0 0 chr6 80216243 80216277 -109063277 - L1PA6 LINE L1 -4 6150 6117 1124 269 71 35 chr6 80216749 80217172 -109062382 + MLT1J1 LTR MaLR 9 446 0 333 228 166 41 chr6 80218831 80218976 -109060578 + MIR3 SINE MIR 19 181 -27 303 264 0 82 chr6 80219391 80219501 -109060053 - L1MC4 LINE L1 -1328 6714 6614 280 315 6 25 chr6 80219512 80219674 -109059880 + (CATATA)n Simple_repeat Simple_repeat 2 160 0 217 335 99 41 chr6 80219856 80220077 -109059477 - L2 LINE L2 -525 2789 2556 2484 47 3 0 chr6 80220855 80221154 -109058400 + AluY SINE Alu 1 300 -11 406 295 25 0 chr6 80221295 80221417 -109058137 - MIR SINE MIR -66 196 72 276 186 0 0 chr6 80221565 80221624 -109057930 + CT-rich Low_complexity Low_complexity 3 61 0 24 0 0 0 chr6 80222577 80222601 -109056953 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 80223349 80223378 -109056176 + AT_rich Low_complexity Low_complexity 1 29 0 1008 155 6 23 chr6 80224375 80224549 -109055005 + FRAM SINE Alu 4 174 -2 490 258 198 42 chr6 80224556 80224773 -109054781 - MIR SINE MIR -6 256 6 180 111 0 0 chr6 80225476 80225503 -109054051 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1127 281 131 16 chr6 80225510 80225954 -109053600 - L2 LINE L2 -15 3298 2804 2124 138 3 0 chr6 80227435 80227739 -109051815 + AluSx SINE Alu 1 305 -7 22 35 0 0 chr6 80228692 80228721 -109050833 + AT_rich Low_complexity Low_complexity 1 29 0 276 391 23 8 chr6 80229368 80229501 -109050053 + MIR SINE MIR 20 154 -108 24 0 0 0 chr6 80229798 80229822 -109049732 + AT_rich Low_complexity Low_complexity 1 24 0 1720 187 164 28 chr6 80231213 80231640 -109047914 - MLT1D LTR MaLR 0 505 21 312 335 62 26 chr6 80231647 80231999 -109047555 + HAL1 LINE L1 1181 1545 -962 217 252 19 37 chr6 80232860 80232967 -109046587 + A-rich Low_complexity Low_complexity 3 107 0 1937 144 42 3 chr6 80233116 80233428 -109046126 - MER7A DNA MER2_type 0 346 25 301 328 56 17 chr6 80233443 80233623 -109045931 + L1 LINE L1 2273 2459 -3687 488 270 70 22 chr6 80233865 80234050 -109045504 + L1MEc LINE L1 37 230 -6166 421 244 176 23 chr6 80234089 80234310 -109045244 + L1MEc LINE L1 1035 1289 -4916 1223 307 101 17 chr6 80234369 80234680 -109044874 + L2 LINE L2 2419 2702 -611 2380 87 3 0 chr6 80234680 80234980 -109044574 - AluSp SINE Alu -7 306 6 1223 307 101 17 chr6 80234980 80235479 -109044075 + L2 LINE L2 2702 3309 -4 432 234 335 0 chr6 80235479 80235688 -109043866 + L1MEc LINE L1 1343 1621 -4594 2028 162 0 0 chr6 80235887 80236190 -109043364 + AluSx SINE Alu 3 305 -7 27 29 0 0 chr6 80236190 80236224 -109043330 + AT_rich Low_complexity Low_complexity 1 34 0 1180 237 28 70 chr6 80236407 80236804 -109042750 - MLT1C LTR MaLR -54 413 34 413 225 33 16 chr6 80236890 80237039 -109042515 + MER58A DNA MER1_type 36 224 0 242 148 8 246 chr6 80237177 80237299 -109042255 - LTR50 LTR ERVL -155 640 548 233 244 100 78 chr6 80237637 80237727 -109041827 + LTR8 LTR ERV1 31 122 -569 957 259 34 45 chr6 80237789 80238141 -109041413 + MER87 LTR ERV1 194 541 0 533 202 18 18 chr6 80238324 80238438 -109041116 - LTR40a LTR ERVL 0 519 406 588 302 48 48 chr6 80238565 80238880 -109040674 + L1ME LINE L1 44 358 -5712 417 265 171 13 chr6 80238993 80239227 -109040327 + L1M4 LINE L1 4147 4417 -1729 1954 130 3 10 chr6 80239255 80239554 -109040000 + AluSx SINE Alu 3 299 -13 1982 228 91 24 chr6 80239554 80239695 -109039859 + L1M4 LINE L1 4549 4679 -1467 2250 101 3 16 chr6 80239695 80240011 -109039543 + AluSx SINE Alu 1 312 0 1982 228 91 24 chr6 80240011 80240571 -109038983 + L1M4 LINE L1 4679 5301 -845 320 120 0 0 chr6 80240545 80240595 -109038959 + L1M LINE L1 5365 5414 -764 * 14365 172 14 41 chr6 80240873 80244655 -109034899 + L1PA12 LINE L1 5 3892 -3692 3284 67 30 5 chr6 80244655 80245088 -109034466 - MLT2A1 LTR ERVL 0 444 1 14365 172 14 41 chr6 80245088 80246360 -109033194 + L1PA12 LINE L1 3892 5196 -2388 6304 84 10 8 chr6 80246360 80247631 -109031923 + L1PA14 LINE L1 4875 6159 -2 35 41 0 0 chr6 80247730 80247779 -109031775 + AT_rich Low_complexity Low_complexity 1 49 0 339 25 0 0 chr6 80248133 80248173 -109031381 + (CA)n Simple_repeat Simple_repeat 1 40 0 191 291 30 97 chr6 80249308 80249442 -109030112 + L2 LINE L2 3146 3270 -2 189 321 0 16 chr6 80249860 80249929 -109029625 - L2 LINE L2 -11 3293 3194 214 273 13 26 chr6 80249939 80250016 -109029538 - MIR SINE MIR -158 104 29 23 33 0 0 chr6 80250417 80250447 -109029107 + AT_rich Low_complexity Low_complexity 1 30 0 1048 170 127 33 chr6 80251245 80251561 -109027993 - L1MA9 LINE L1 0 6312 5949 290 333 57 0 chr6 80252074 80252179 -109027375 - MIR SINE MIR -78 184 74 2075 162 19 11 chr6 80252197 80252562 -109026992 + THE1C LTR MaLR 1 368 -7 2178 103 7 7 chr6 80252778 80253088 -109026466 + AluSp SINE Alu 1 310 -3 543 250 69 0 chr6 80253640 80253784 -109025770 - MIR SINE MIR 0 262 109 424 254 41 8 chr6 80254293 80254415 -109025139 + MER58C DNA MER1_type 86 211 -4 245 333 104 14 chr6 80255144 80255288 -109024266 + L2 LINE L2 3116 3272 0 23 33 0 0 chr6 80257060 80257090 -109022464 + AT_rich Low_complexity Low_complexity 1 30 0 1337 174 9 0 chr6 80257178 80257408 -109022146 + MER46A DNA MER2_type 5 236 0 1659 190 89 20 chr6 80257457 80257672 -109021882 - MER34 LTR ERV1 0 585 386 2070 157 75 15 chr6 80257672 80258073 -109021481 + MSTB LTR MaLR 2 426 0 1659 190 89 20 chr6 80258073 80258307 -109021247 - MER34 LTR ERV1 -199 386 1 312 281 65 86 chr6 80258364 80258503 -109021051 - HAL1b LINE L1 -462 886 751 251 282 236 36 chr6 80259619 80259814 -109019740 - L2 LINE L2 -455 2859 2626 1809 196 15 28 chr6 80259832 80260225 -109019329 - MLT1B LTR MaLR -2 388 1 2158 123 0 3 chr6 80260559 80260861 -109018693 + AluSg SINE Alu 1 301 -9 318 330 32 0 chr6 80262500 80262594 -109016960 - MIR SINE MIR -165 97 1 3675 155 53 18 chr6 80262821 80263504 -109016050 - MER39 LTR ERV1 0 707 1 2469 140 19 26 chr6 80263861 80264283 -109015271 - Tigger2 DNA MER2_type 0 2718 2300 458 103 15 15 chr6 80264292 80264360 -109015194 - Tigger2 DNA MER2_type -2649 69 2 204 122 0 0 chr6 80264905 80264946 -109014608 + (A)n Simple_repeat Simple_repeat 1 41 0 27 0 0 0 chr6 80265406 80265433 -109014121 + AT_rich Low_complexity Low_complexity 1 27 0 238 340 85 15 chr6 80265536 80265736 -109013818 + MIR SINE MIR 8 221 -41 22 0 0 0 chr6 80267249 80267271 -109012283 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr6 80267351 80267386 -109012168 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 80268039 80268060 -109011494 + AT_rich Low_complexity Low_complexity 1 21 0 230 277 50 23 chr6 80268616 80268725 -109010829 + MIR SINE MIR 38 148 -78 21 0 0 0 chr6 80269765 80269786 -109009768 + AT_rich Low_complexity Low_complexity 1 21 0 521 291 91 26 chr6 80269791 80270451 -109009103 + HAL1 LINE L1 767 1652 -855 491 245 238 20 chr6 80271309 80271385 -109008169 + MER5A DNA MER1_type 2 60 -129 2248 102 3 0 chr6 80271385 80271689 -109007865 + AluSx SINE Alu 1 305 -7 491 245 238 20 chr6 80271689 80271763 -109007791 + MER5A DNA MER1_type 60 185 -4 300 53 0 0 chr6 80271854 80271892 -109007662 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1108 235 123 32 chr6 80272452 80272656 -109006898 + L2 LINE L2 2445 2629 -684 916 225 57 5 chr6 80272656 80272865 -109006689 + MER58A DNA MER1_type 5 224 0 1108 235 123 32 chr6 80272865 80273366 -109006188 + L2 LINE L2 2629 3308 -5 24 32 0 0 chr6 80274590 80274621 -109004933 + AT_rich Low_complexity Low_complexity 1 31 0 1119 266 158 13 chr6 80275182 80275580 -109003974 - MER110 LTR ERV1 -6 485 30 449 164 16 125 chr6 80275767 80275895 -109003659 + MER2 DNA MER2_type 1 114 -231 562 244 117 10 chr6 80276043 80276240 -109003314 + L2 LINE L2 2160 2377 -937 807 139 22 0 chr6 80276499 80276636 -109002918 + L1MA3 LINE L1 6161 6300 -5 267 290 50 30 chr6 80277159 80277259 -109002295 + MIR3 SINE MIR 93 194 -14 2467 74 0 0 chr6 80277458 80277768 -109001786 + AluY SINE Alu 1 310 -1 237 33 0 0 chr6 80278137 80278167 -109001387 + (TC)n Simple_repeat Simple_repeat 2 31 0 1145 206 161 21 chr6 80281321 80281612 -108997942 + MER2 DNA MER2_type 14 345 0 313 315 135 64 chr6 80281612 80281708 -108997846 + L2 LINE L2 2282 2370 -944 1867 126 0 0 chr6 80281708 80281969 -108997585 - AluSx SINE Alu -12 300 40 313 315 135 64 chr6 80281969 80282323 -108997231 + L2 LINE L2 2370 2764 -550 21 0 0 0 chr6 80283027 80283048 -108996506 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr6 80283193 80283221 -108996333 + AT_rich Low_complexity Low_complexity 1 28 0 248 269 96 0 chr6 80283980 80284084 -108995470 + MER113 DNA MER1_type? 4 117 -404 22 0 0 0 chr6 80285372 80285394 -108994160 + AT_rich Low_complexity Low_complexity 1 22 0 269 340 39 44 chr6 80285739 80285942 -108993612 + MLT1J LTR MaLR 106 307 -204 1029 178 112 0 chr6 80286265 80286462 -108993092 - MER20 DNA MER1_type 0 219 1 219 36 0 0 chr6 80288143 80288171 -108991383 + (CA)n Simple_repeat Simple_repeat 2 29 0 34 0 0 0 chr6 80289320 80289354 -108990200 + AT_rich Low_complexity Low_complexity 1 34 0 353 152 114 0 chr6 80289645 80289724 -108989830 - L1MC4 LINE L1 -37 8005 7918 3353 180 59 13 chr6 80289769 80290520 -108989034 - L1MC4 LINE L1 -459 7583 6799 308 263 0 0 chr6 80290598 80290655 -108988899 + MER2 DNA MER2_type 282 338 -7 23 0 0 0 chr6 80290825 80290848 -108988706 + AT_rich Low_complexity Low_complexity 1 23 0 339 96 0 0 chr6 80291496 80291548 -108988006 + (CAT)n Simple_repeat Simple_repeat 2 53 0 617 318 87 38 chr6 80292129 80292683 -108986871 - L1M4 LINE L1 -3157 2989 2409 2379 247 33 14 chr6 80292695 80293277 -108986277 - MLT1E2 LTR MaLR 0 626 34 369 313 71 25 chr6 80293301 80293499 -108986055 - L1M4 LINE L1 -3737 2409 2203 757 210 88 5 chr6 80293637 80293859 -108985695 + L1MB4 LINE L1 5928 6180 0 564 282 88 11 chr6 80294269 80294450 -108985104 - MIR SINE MIR -50 212 18 2386 82 3 0 chr6 80294817 80295121 -108984433 + AluSp SINE Alu 1 305 -8 3328 225 86 28 chr6 80295404 80297254 -108982300 + L1ME2 LINE L1 4117 6062 -102 1341 101 29 0 chr6 80297699 80297908 -108981646 - L1PA13 LINE L1 0 6163 5949 1903 247 45 16 chr6 80298356 80298911 -108980643 + L1MA10 LINE L1 5754 6324 -10 1056 241 40 0 chr6 80298922 80299200 -108980354 + L1 LINE L1 4766 5054 -1092 199 303 182 0 chr6 80299324 80299423 -108980131 - MIR SINE MIR -144 118 2 866 212 34 6 chr6 80300716 80300895 -108978659 - MER5A DNA MER1_type -3 186 3 203 138 0 0 chr6 80301552 80301581 -108977973 + (CA)n Simple_repeat Simple_repeat 2 30 0 4692 103 12 3 chr6 80301609 80302297 -108977257 - L1PA13 LINE L1 -129 6034 5341 308 319 141 5 chr6 80302297 80302482 -108977072 - MIR SINE MIR -19 243 34 53 30 0 0 chr6 80302724 80302791 -108976763 + AT_rich Low_complexity Low_complexity 1 67 0 457 315 143 37 chr6 80302958 80303553 -108976001 - L1 LINE L1 -1734 4412 3749 1289 183 98 25 chr6 80303554 80303828 -108975726 - AluJb SINE Alu -8 304 11 237 284 71 19 chr6 80303869 80304024 -108975530 - L1 LINE L1 -2415 3731 3569 25 31 0 0 chr6 80304138 80304170 -108975384 + AT_rich Low_complexity Low_complexity 1 32 0 2517 109 19 0 chr6 80304327 80304695 -108974859 - THE1C LTR MaLR 0 375 1 24 67 0 0 chr6 80305256 80305301 -108974253 + AT_rich Low_complexity Low_complexity 1 45 0 499 223 106 39 chr6 80305710 80305909 -108973645 + MLT1J2 LTR MaLR 37 249 -197 423 158 8 12 chr6 80306343 80306441 -108973113 - MER46A DNA MER2_type -4 232 132 381 117 106 53 chr6 80306433 80306527 -108973027 - MER46A DNA MER2_type -41 195 97 * 7341 179 54 21 chr6 80306527 80307967 -108971587 + L1MA2 LINE L1 15 1502 -6063 * 14532 158 30 25 chr6 80307956 80311204 -108968350 + L1MA2 LINE L1 2783 6011 -1712 305 24 24 0 chr6 80311204 80311246 -108968308 + (CA)n Simple_repeat Simple_repeat 1 43 0 14532 158 30 25 chr6 80311246 80312730 -108966824 + L1MA2 LINE L1 6011 7543 -180 1904 121 7 17 chr6 80312730 80313020 -108966534 + AluSq SINE Alu 1 287 -26 14532 158 30 25 chr6 80313020 80313203 -108966351 + L1MA2 LINE L1 7543 7723 0 426 156 156 42 chr6 80313214 80313310 -108966244 - MER46A DNA MER2_type -129 107 1 259 98 0 98 chr6 80313266 80313317 -108966237 + MER46A DNA MER2_type 105 150 -86 * 744 148 0 0 chr6 80313429 80313551 -108966003 + L1PB4 LINE L1 6022 6143 -13 28 0 0 0 chr6 80313574 80313602 -108965952 + AT_rich Low_complexity Low_complexity 1 28 0 199 120 80 20 chr6 80313658 80313708 -108965846 - L3b LINE CR1 -385 1198 1146 2198 144 86 5 chr6 80313838 80314234 -108965320 - MSTA LTR MaLR 0 428 1 204 350 60 26 chr6 80314526 80314643 -108964911 + L2 LINE L2 2626 2746 -568 244 291 78 104 chr6 80314934 80315164 -108964390 + L2 LINE L2 2833 3056 -216 28 0 0 0 chr6 80315366 80315394 -108964160 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr6 80315519 80315549 -108964005 + AT_rich Low_complexity Low_complexity 1 30 0 1530 245 98 4 chr6 80316303 80316764 -108962790 + HsTC2 DNA Tc2 7 510 -1388 365 167 67 127 chr6 80316748 80316898 -108962656 + HsTC2 DNA Tc2 1255 1571 -327 * 456 210 0 0 chr6 80316899 80316980 -108962574 - L1MA4 LINE L1 -357 5943 5863 1674 154 16 13 chr6 80317002 80317320 -108962234 + L1MA4 LINE L1 5981 6299 -1 1424 153 131 91 chr6 80317327 80317679 -108961875 + MER47A DNA MER2_type 1 366 0 557 230 272 8 chr6 80317679 80317940 -108961614 + HsTC2 DNA Tc2 1568 1897 -1 1430 209 47 42 chr6 80318034 80318393 -108961161 + MLT1A1 LTR MaLR 5 365 0 4789 148 29 29 chr6 80320178 80320256 -108959298 - MER6 DNA MER2_type 0 865 788 2198 108 0 0 chr6 80320256 80320552 -108959002 - AluSq SINE Alu -16 297 2 4789 148 29 29 chr6 80320552 80321338 -108958216 - MER6 DNA MER2_type -76 789 1 21 36 0 0 chr6 80321434 80321462 -108958092 + AT_rich Low_complexity Low_complexity 1 28 0 793 298 138 37 chr6 80321496 80321987 -108957567 + L2 LINE L2 2600 3152 -161 1361 210 106 68 chr6 80321987 80322429 -108957125 + LTR40b LTR ERVL 4 462 0 793 298 138 37 chr6 80322429 80322469 -108957085 + L2 LINE L2 3152 3187 -126 311 310 96 27 chr6 80322513 80322700 -108956854 - MIR SINE MIR -46 216 17 249 259 36 7 chr6 80323400 80323539 -108956015 + (TA)n Simple_repeat Simple_repeat 2 144 0 297 0 0 0 chr6 80324457 80324490 -108955064 + (CA)n Simple_repeat Simple_repeat 2 34 0 279 200 17 0 chr6 80324906 80324966 -108954588 - HsTC2 DNA Tc2 -608 1290 1230 * 381 283 25 0 chr6 80324961 80325081 -108954473 - HsTC2 DNA Tc2 -1772 126 4 620 227 136 77 chr6 80325301 80325676 -108953878 + L1ME2 LINE L1 5768 6164 0 2120 104 0 0 chr6 80325685 80325963 -108953591 + AluSg SINE Alu 1 278 -32 225 0 0 0 chr6 80325963 80325988 -108953566 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 2077 87 3 48 chr6 80327239 80327548 -108952006 - AluSg SINE Alu -15 295 1 235 173 74 12 chr6 80327902 80327983 -108951571 + Charlie4 DNA MER1_type 1804 1889 -72 24 32 0 0 chr6 80328001 80328032 -108951522 + AT_rich Low_complexity Low_complexity 1 31 0 839 94 86 0 chr6 80330139 80330267 -108949287 - MER85 DNA T2_type 0 139 1 2146 95 25 0 chr6 80330708 80330993 -108948561 - AluSc SINE Alu -17 292 1 2776 13 0 0 chr6 80331109 80331417 -108948137 - AluYb8 SINE Alu -10 308 1 269 128 0 0 chr6 80331619 80331658 -108947896 + MLT1B LTR MaLR 3 41 -349 619 226 37 37 chr6 80332935 80333099 -108946455 + MLT1B LTR MaLR 29 192 -182 1015 216 0 0 chr6 80333136 80333335 -108946219 + MLT1B LTR MaLR 192 390 0 296 310 98 73 chr6 80333373 80333618 -108945936 + L2 LINE L2 2986 3236 -36 622 232 116 0 chr6 80333953 80334117 -108945437 + MER58A DNA MER1_type 42 224 0 262 326 107 4 chr6 80334709 80334951 -108944603 + L1ME4a LINE L1 5667 5933 -188 248 270 14 0 chr6 80335648 80335722 -108943832 + (TA)n Simple_repeat Simple_repeat 2 76 0 303 235 15 0 chr6 80335723 80335791 -108943763 - L1MCa LINE L1 -4363 2063 1995 251 183 42 0 chr6 80335791 80335862 -108943692 - L1MCa LINE L1 -4359 2067 1994 603 312 55 18 chr6 80335895 80336113 -108943441 - MIR SINE MIR -34 228 3 304 323 66 40 chr6 80336788 80337014 -108942540 - L1 LINE L1 -2252 3894 3663 2313 74 0 3 chr6 80337028 80337327 -108942227 - AluSq SINE Alu -15 298 1 676 247 151 5 chr6 80337397 80337583 -108941971 + MER58A DNA MER1_type 1 213 -11 910 184 117 0 chr6 80337591 80337839 -108941715 + MER33 DNA MER1_type 1 267 -57 571 194 30 15 chr6 80338626 80338760 -108940794 - L1M3 LINE L1 -404 5767 5632 3039 192 58 16 chr6 80339085 80339427 -108940127 + L1MB3 LINE L1 5443 5769 -414 1913 35 9 4 chr6 80339427 80339653 -108939901 + AluY SINE Alu 70 296 -15 3039 192 58 16 chr6 80339653 80339987 -108939567 + L1MB3 LINE L1 5769 6147 -36 6912 47 20 2 chr6 80340418 80341307 -108938247 + L1PA8 LINE L1 5266 6170 -2 1033 196 148 50 chr6 80341681 80341780 -108937774 + L1ME3 LINE L1 5262 5350 -814 2109 130 0 7 chr6 80341780 80342087 -108937467 + AluSx SINE Alu 3 307 -5 1033 196 148 50 chr6 80342087 80342324 -108937230 + L1ME3 LINE L1 5350 5631 -533 453 267 18 139 chr6 80342327 80342709 -108936845 - MER68 LTR ERV1 -219 343 8 673 214 128 13 chr6 80342718 80342971 -108936583 + L1ME3 LINE L1 5695 5973 -189 597 242 40 95 chr6 80344135 80344387 -108935167 + MLT1J LTR MaLR 220 457 -54 316 330 68 28 chr6 80344460 80344828 -108934726 - HERVL LTR ERVL -451 5203 4841 324 269 29 111 chr6 80345003 80345320 -108934234 + L1ME LINE L1 3621 3911 -2235 310 225 150 33 chr6 80345358 80345478 -108934076 - L2 LINE L2 0 3313 3180 630 273 137 15 chr6 80345601 80345965 -108933589 + L1ME LINE L1 5384 5800 -362 1475 264 70 16 chr6 80346286 80346819 -108932735 + MLT1F1 LTR MaLR 1 567 0 21 57 0 0 chr6 80347010 80347045 -108932509 + AT_rich Low_complexity Low_complexity 1 35 0 1009 280 37 7 chr6 80347330 80347626 -108931928 - L1MB7 LINE L1 -10 6672 6368 555 241 58 0 chr6 80347626 80347763 -108931791 - MER58B DNA MER1_type 0 341 197 1125 222 53 79 chr6 80347808 80348032 -108931522 - L1MB7 LINE L1 -365 6311 6083 781 154 0 22 chr6 80348032 80348168 -108931386 + FLAM_C SINE Alu 1 133 0 1125 222 53 79 chr6 80348168 80348300 -108931254 - L1MB7 LINE L1 -593 6083 5963 1620 211 19 32 chr6 80348300 80348679 -108930875 + MLT1A2 LTR MaLR 1 374 0 411 164 0 0 chr6 80348679 80348746 -108930808 + MLT1A2-int LTR MaLR 1 67 -1304 1585 190 66 26 chr6 80348777 80349124 -108930430 + MLT1A2-int LTR MaLR 351 711 -660 379 176 0 0 chr6 80349110 80349178 -108930376 + MLT1A2-int LTR MaLR 821 888 -483 * 240 253 81 11 chr6 80349232 80349319 -108930235 + MLT-int LTR MaLR 676 768 -967 1674 264 50 20 chr6 80349382 80349841 -108929713 + MLT1A2-int LTR MaLR 1263 1735 0 1263 173 107 54 chr6 80349857 80350031 -108929523 + MLT1A2 LTR MaLR 21 184 -190 201 39 0 0 chr6 80350031 80350057 -108929497 + (TC)n Simple_repeat Simple_repeat 2 27 0 1263 173 107 54 chr6 80350057 80350218 -108929336 + MLT1A2 LTR MaLR 184 374 0 7460 246 76 59 chr6 80350219 80350622 -108928932 - L1MB7 LINE L1 -703 5961 5566 2184 108 0 10 chr6 80350622 80350929 -108928625 - AluSx SINE Alu -4 308 5 7460 246 76 59 chr6 80350929 80351836 -108927718 - L1MB7 LINE L1 -1098 5566 4676 243 61 0 0 chr6 80351836 80351869 -108927685 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 7460 246 76 59 chr6 80351869 80355416 -108924138 - L1MB7 LINE L1 -1988 4676 903 26 0 6 0 chr6 80355445 80355500 -108924054 + AT_rich Low_complexity Low_complexity 1 26 0 229 322 38 80 chr6 80355544 80355808 -108923746 - L1MB7 LINE L1 -5667 875 623 327 297 70 48 chr6 80356000 80356229 -108923325 - L1MB7 LINE L1 -6304 238 5 2180 295 95 28 chr6 80356337 80356757 -108922797 - L2 LINE L2 0 3313 2923 1714 240 107 31 chr6 80356757 80357308 -108922246 - MLT1E LTR MaLR 0 593 1 2180 295 95 28 chr6 80357308 80358091 -108921463 - L2 LINE L2 -390 2923 2030 306 192 154 0 chr6 80358673 80358751 -108920803 - MIR SINE MIR -89 173 84 1428 189 189 3 chr6 80358790 80359124 -108920430 + MSTD LTR MaLR 1 396 0 461 265 114 14 chr6 80359466 80359677 -108919877 + L1ME2 LINE L1 5695 5926 -238 2529 87 25 14 chr6 80359733 80360091 -108919463 + THE1B LTR MaLR 1 362 -2 610 240 0 8 chr6 80360514 80360635 -108918919 + FRAM SINE Alu 1 120 -56 756 107 0 0 chr6 80360651 80360763 -108918791 + (GGGA)n Simple_repeat Simple_repeat 1 112 0 3277 210 73 24 chr6 80361100 80361961 -108917593 + Charlie1a DNA MER1_type 12 914 -541 298 236 40 81 chr6 80362442 80362590 -108916964 + MER5B DNA MER1_type 1 142 -36 1932 132 28 11 chr6 80362594 80362881 -108916673 + AluSx SINE Alu 4 295 -17 2051 106 27 17 chr6 80362886 80363179 -108916375 + AluSx SINE Alu 3 298 -14 193 348 82 32 chr6 80363322 80363480 -108916074 + MIR SINE MIR 63 228 -34 403 281 26 0 chr6 80363965 80364079 -108915475 + MER105 DNA DNA 19 135 -69 28 79 0 0 chr6 80364463 80364526 -108915028 + AT_rich Low_complexity Low_complexity 1 63 0 2268 98 0 0 chr6 80364624 80364920 -108914634 + AluSg SINE Alu 1 296 -14 3405 109 90 38 chr6 80365552 80366164 -108913390 + LTR9B LTR ERV1 1 644 0 233 339 69 35 chr6 80366469 80366836 -108912718 - L2 LINE L2 -177 3095 2692 235 250 102 36 chr6 80367484 80367680 -108911874 + L1MC4a LINE L1 4498 4706 -1440 1164 186 215 12 chr6 80368172 80368419 -108911135 + AluSg1 SINE Alu 1 297 -12 382 299 45 50 chr6 80368635 80368856 -108910698 + L1MC4a LINE L1 5711 5930 -1878 1841 142 31 7 chr6 80369096 80369384 -108910170 - AluJb SINE Alu -15 297 3 247 250 18 0 chr6 80369487 80369543 -108910011 - MER20B DNA MER1_type -725 58 2 24 0 0 0 chr6 80369580 80369604 -108909950 + AT_rich Low_complexity Low_complexity 1 24 0 1129 292 149 40 chr6 80370054 80370156 -108909398 + L2 LINE L2 1285 1374 -1940 801 198 107 5 chr6 80370156 80370353 -108909201 + MER20B DNA MER1_type 3 219 0 1129 292 149 40 chr6 80370353 80371449 -108908105 + L2 LINE L2 1374 2614 -700 533 365 117 7 chr6 80371450 80371946 -108907608 + L2 LINE L2 2751 3308 -5 21 36 0 0 chr6 80372132 80372160 -108907394 + AT_rich Low_complexity Low_complexity 1 28 0 1640 122 0 4 chr6 80373183 80373412 -108906142 + AluSx SINE Alu 1 228 -84 507 101 0 0 chr6 80373847 80373926 -108905628 - L1PA5 LINE L1 -6 6148 6070 680 279 88 14 chr6 80374573 80374788 -108904766 + MIR SINE MIR 31 261 -1 221 261 0 0 chr6 80374800 80374846 -108904708 + L2 LINE L2 3261 3306 -7 1903 135 3 14 chr6 80374973 80375261 -108904293 + AluSx SINE Alu 12 296 -16 191 0 103 0 chr6 80375268 80375297 -108904257 + A-rich Low_complexity Low_complexity 5 36 0 573 294 27 8 chr6 80375475 80375649 -108903905 - MIR3 SINE MIR -22 186 2 942 206 22 5 chr6 80376883 80377067 -108902487 - MER5A DNA MER1_type -1 188 2 439 279 73 36 chr6 80377105 80377270 -108902284 + MER5B DNA MER1_type 8 178 0 426 206 33 11 chr6 80377421 80377513 -108902041 - L1ME1 LINE L1 -97 6069 5976 3099 138 42 2 chr6 80377581 80378058 -108901496 + MER41E LTR ERV1 17 512 0 705 177 85 6 chr6 80378058 80378222 -108901332 - L1ME1 LINE L1 -186 5980 5804 263 184 119 18 chr6 80378309 80378418 -108901136 + Charlie1a DNA MER1_type 1212 1331 -124 366 203 119 34 chr6 80378618 80378736 -108900818 - Charlie1a DNA MER1_type 0 1455 1328 319 286 86 0 chr6 80378747 80378852 -108900702 + MIR SINE MIR 149 262 0 355 231 143 0 chr6 80378932 80379023 -108900531 - MER5B DNA MER1_type -74 104 1 317 133 100 17 chr6 80379111 80379171 -108900383 - MER5A DNA MER1_type -84 105 41 1625 146 50 36 chr6 80379439 80379741 -108899813 - AluJb SINE Alu -6 306 1 5080 194 64 19 chr6 80379770 80380926 -108898628 + Charlie1a DNA MER1_type 1 1208 -247 1127 179 123 75 chr6 80383121 80383550 -108896004 + LTR7 LTR ERV1 1 450 0 3918 133 39 22 chr6 80384215 80384364 -108895190 + LTR62 LTR ERVK 1 146 -573 306 0 0 0 chr6 80384364 80384398 -108895156 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3367 50 5 2 chr6 80384398 80384817 -108894737 - L1PA5 LINE L1 -18 6136 5717 3918 133 39 22 chr6 80384817 80385342 -108894212 + LTR62 LTR ERVK 145 687 -32 28 0 0 0 chr6 80386128 80386156 -108893398 + AT_rich Low_complexity Low_complexity 1 28 0 276 391 23 8 chr6 80386449 80386582 -108892972 - MIR SINE MIR -108 154 20 22 35 0 0 chr6 80387229 80387258 -108892296 + AT_rich Low_complexity Low_complexity 1 29 0 1986 127 10 3 chr6 80388211 80388510 -108891044 - AluSx SINE Alu -7 305 5 255 262 0 9 chr6 80388903 80389010 -108890544 + (TA)n Simple_repeat Simple_repeat 1 106 0 32361 59 2 5 chr6 80389417 80395250 -108884304 + L1PA2 LINE L1 633 6469 -1 225 296 41 20 chr6 80395289 80395387 -108884167 - MIR3 SINE MIR -31 177 78 341 211 13 26 chr6 80455372 80455448 -108824106 - LTR39 LTR ERV1 -708 75 1 365 225 114 145 chr6 80455543 80455770 -108823784 - LTR33 LTR ERVL -3 518 299 617 217 8 8 chr6 80455863 80455992 -108823562 - LTR33 LTR ERVL -390 131 3 3661 127 14 25 chr6 80456831 80457424 -108822130 + LTR59 LTR ERV1 1 586 -11 393 22 0 0 chr6 80457477 80457523 -108822031 + (CA)n Simple_repeat Simple_repeat 1 46 0 1732 246 43 16 chr6 80457991 80458430 -108821124 + MER69 DNA AcHobo 1 451 -2075 686 161 115 11 chr6 80458464 80458638 -108820916 + MER69 DNA AcHobo 2331 2522 -4 204 40 0 0 chr6 80460960 80460985 -108818569 + (T)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr6 80461446 80461469 -108818085 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr6 80462404 80462427 -108817127 + AT_rich Low_complexity Low_complexity 1 23 0 296 208 117 100 chr6 80463075 80463195 -108816359 - L1M4 LINE L1 -1304 4842 4726 1544 198 7 100 chr6 80463195 80463419 -108816135 + MLT1B LTR MaLR 1 168 -222 2147 132 6 0 chr6 80463419 80463730 -108815824 + AluSq SINE Alu 1 313 0 1544 198 7 100 chr6 80463730 80463935 -108815619 + MLT1B LTR MaLR 168 390 0 296 208 117 100 chr6 80463935 80464045 -108815509 - L1M4 LINE L1 -1420 4726 4608 1908 171 31 6 chr6 80464141 80464497 -108815057 + MLT1A1 LTR MaLR 1 365 0 45 0 0 0 chr6 80464633 80464678 -108814876 + AT_rich Low_complexity Low_complexity 1 45 0 444 82 0 0 chr6 80464840 80464901 -108814653 + (TA)n Simple_repeat Simple_repeat 2 62 0 363 266 97 14 chr6 80465117 80465314 -108814240 - L1M4 LINE L1 -2863 3283 3076 683 272 15 48 chr6 80465410 80465682 -108813872 - L1ME3 LINE L1 0 6162 5900 * 1020 253 133 34 chr6 80465667 80466224 -108813330 + L1ME3A LINE L1 5351 5962 -208 2257 103 100 0 chr6 80466381 80466722 -108812832 - THE1C LTR MaLR 0 375 1 365 297 119 12 chr6 80466890 80467301 -108812253 + L1MEc LINE L1 1945 2399 -3997 24 0 0 0 chr6 80467360 80467384 -108812170 + AT_rich Low_complexity Low_complexity 1 24 0 377 263 103 53 chr6 80467449 80467788 -108811766 + L1MEc LINE L1 2403 2758 -3457 * 579 268 43 10 chr6 80467784 80468056 -108811498 - L1MDa LINE L1 -5257 813 534 21 71 0 0 chr6 80468653 80468695 -108810859 + AT_rich Low_complexity Low_complexity 1 42 0 232 314 48 29 chr6 80469503 80469608 -108809946 - MIR3 SINE MIR -7 201 95 220 357 21 29 chr6 80469675 80469815 -108809739 - L2 LINE L2 -262 3010 2872 245 366 92 8 chr6 80469823 80469954 -108809600 - MER5A DNA MER1_type -1 188 47 210 341 23 23 chr6 80470054 80470142 -108809412 - L2 LINE L2 -529 2785 2698 186 71 0 0 chr6 80470402 80470430 -108809124 + (TTAA)n Simple_repeat Simple_repeat 4 31 0 1588 170 28 31 chr6 80470430 80470718 -108808836 - AluJb SINE Alu -25 287 1 273 315 88 52 chr6 80470796 80471104 -108808450 - L2 LINE L2 -961 2353 2035 23 0 0 0 chr6 80471909 80471932 -108807622 + AT_rich Low_complexity Low_complexity 1 23 0 398 372 64 39 chr6 80472030 80472466 -108807088 - L3 LINE CR1 -1062 515 69 539 257 164 7 chr6 80473852 80474004 -108805550 - LTR67 LTR ERVL -35 522 347 801 127 0 0 chr6 80475125 80475243 -108804311 + FLAM_C SINE Alu 1 118 -15 32 0 0 0 chr6 80475243 80475275 -108804279 + AT_rich Low_complexity Low_complexity 1 32 0 1718 186 62 0 chr6 80475298 80475621 -108803933 - MER2 DNA MER2_type -1 343 1 408 299 68 41 chr6 80478495 80478716 -108800838 - MIR SINE MIR -24 238 12 248 330 34 57 chr6 80480247 80480423 -108799131 - MIR SINE MIR -59 203 32 955 209 29 2 chr6 80480444 80480666 -108798888 - MIR SINE MIR -15 247 18 4730 180 43 22 chr6 80482326 80483533 -108796021 - L1MA9 LINE L1 -38 6274 5039 817 203 33 11 chr6 80483907 80484089 -108795465 - MER5A DNA MER1_type -3 186 1 708 193 22 0 chr6 80484388 80484523 -108795031 - MIR SINE MIR -122 140 3 23 0 0 0 chr6 80486510 80486533 -108793021 + AT_rich Low_complexity Low_complexity 1 23 0 449 280 28 0 chr6 80486600 80486707 -108792847 - MIR3 SINE MIR -12 196 87 2024 120 7 7 chr6 80487141 80487441 -108792113 - AluSx SINE Alu -3 309 10 937 249 4 9 chr6 80488333 80488558 -108790996 + AluJo SINE Alu 1 224 -88 1263 323 54 28 chr6 80489184 80489717 -108789837 - MLT1K LTR MaLR 0 588 42 2262 98 7 7 chr6 80489879 80490184 -108789370 + AluSq SINE Alu 5 309 -4 2370 87 0 0 chr6 80491389 80491688 -108787866 - AluY SINE Alu -12 299 1 275 308 53 15 chr6 80492098 80492231 -108787323 + L1ME LINE L1 5636 5773 -348 2367 42 0 0 chr6 80492816 80493102 -108786452 + L1PA4 LINE L1 5867 6152 -3 801 291 98 49 chr6 80493237 80494157 -108785397 - L1M4 LINE L1 -1037 5109 4145 654 312 93 33 chr6 80494425 80495254 -108784300 - L1MEc LINE L1 -4578 1818 940 304 295 89 0 chr6 80495620 80495732 -108783822 + L2 LINE L2 3192 3313 0 258 370 9 9 chr6 80495864 80495972 -108783582 - MIR SINE MIR -1 261 154 1242 307 26 54 chr6 80496784 80497283 -108782271 + L2 LINE L2 2829 3313 0 22 0 0 0 chr6 80498924 80498946 -108780608 + AT_rich Low_complexity Low_complexity 1 22 0 995 327 46 26 chr6 80500012 80500576 -108778978 + L2 LINE L2 2470 3085 -228 261 0 0 0 chr6 80500622 80500651 -108778903 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1566 245 132 11 chr6 80501235 80501705 -108777849 + MLT1H LTR MaLR 21 547 -2 1748 184 55 9 chr6 80501825 80502172 -108777382 - MLT1A1 LTR MaLR 0 365 3 211 302 0 16 chr6 80503060 80503123 -108776431 + MIR SINE MIR 5 66 -196 198 398 11 11 chr6 80503863 80503951 -108775603 - L2 LINE L2 -47 3225 3138 258 271 57 21 chr6 80504970 80505110 -108774444 - L1ME4a LINE L1 -6 6115 5971 335 295 119 46 chr6 80505120 80505405 -108774149 - L1ME4a LINE L1 -516 5605 5300 290 229 0 26 chr6 80507778 80507931 -108771623 + (TA)n Simple_repeat Simple_repeat 2 150 0 26 0 0 0 chr6 80509217 80509243 -108770311 + GC_rich Low_complexity Low_complexity 1 26 0 331 299 147 27 chr6 80509299 80509523 -108770031 + L1M2 LINE L1 718 968 -5881 253 245 0 0 chr6 80511128 80511181 -108768373 - L2 LINE L2 -300 2972 2920 21 0 0 0 chr6 80511568 80511589 -108767965 + AT_rich Low_complexity Low_complexity 1 21 0 641 345 45 33 chr6 80512391 80512976 -108766578 - L2 LINE L2 -226 3046 2402 2358 91 0 7 chr6 80513784 80514091 -108765463 - AluSx SINE Alu -7 305 1 220 27 54 0 chr6 80514104 80514141 -108765413 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1460 327 98 24 chr6 80515068 80515661 -108763893 + MER115 DNA AcHobo 34 670 -23 543 126 72 37 chr6 80515659 80515772 -108763782 - MSTD LTR MaLR -252 113 1 * 2560 66 0 0 chr6 80516444 80516747 -108762807 + AluY SINE Alu 1 303 -8 1697 317 147 17 chr6 80516915 80518145 -108761409 - L2 LINE L2 -8 3264 1862 27 0 0 0 chr6 80519613 80519640 -108759914 + AT_rich Low_complexity Low_complexity 1 27 0 2024 109 48 20 chr6 80519713 80520007 -108759547 + AluSg SINE Alu 1 302 -8 315 67 0 0 chr6 80520014 80520059 -108759495 + L1MB3 LINE L1 5324 5368 -812 4147 159 40 24 chr6 80520159 80520288 -108759266 + L1MB3 LINE L1 5339 5464 -719 2080 99 3 11 chr6 80520288 80520614 -108758940 - AluSc SINE Alu 0 324 1 4147 159 40 24 chr6 80520614 80520762 -108758792 + L1MB3 LINE L1 5464 5608 -575 189 0 0 0 chr6 80520762 80520783 -108758771 + (TATTG)n Simple_repeat Simple_repeat 5 25 0 4147 159 40 24 chr6 80520783 80521333 -108758221 + L1MB3 LINE L1 5608 6181 -2 350 313 60 33 chr6 80523152 80523334 -108756220 - MER5A DNA MER1_type -1 188 2 839 149 21 0 chr6 80523474 80523615 -108755939 - L1MB1 LINE L1 -5 6163 6020 367 309 107 6 chr6 80525147 80525325 -108754229 - L2 LINE L2 -276 3037 2842 2329 89 0 16 chr6 80526154 80526457 -108753097 + AluSx SINE Alu 1 298 -14 2253 97 0 23 chr6 80526955 80527265 -108752289 - AluSx SINE Alu -9 303 1 1369 223 62 37 chr6 80527453 80527941 -108751613 - L1MA9 LINE L1 -21 6291 5792 * 2759 199 9 6 chr6 80527939 80528712 -108750842 + L1MA9 LINE L1 4996 5772 -540 616 261 101 25 chr6 80529512 80529750 -108749804 - L1ME3 LINE L1 -8 6154 5899 1902 132 61 9 chr6 80529752 80530078 -108749476 - MER61A LTR ERV1 0 343 1 2475 100 13 3 chr6 80530078 80530620 -108748934 - MER61A-int LTR ERV1 0 5217 4628 1752 112 60 11 chr6 80530629 80530897 -108748657 + AluSx SINE Alu 20 300 -12 181 298 83 0 chr6 80531449 80531533 -108748021 + L2 LINE L2 2116 2206 -1108 257 250 0 0 chr6 80531533 80531585 -108747969 + LTR30 LTR ERV1 1 52 -670 1330 112 225 9 chr6 80531585 80531952 -108747602 + LTR12 LTR ERV1 57 2021 -417 309 265 10 0 chr6 80531952 80532050 -108747504 + LTR30 LTR ERV1 544 642 -80 1605 99 36 0 chr6 80532051 80532274 -108747280 + LTR12 LTR ERV1 480 710 -4 420 276 171 47 chr6 80532274 80532637 -108746917 + L2 LINE L2 2199 2606 -708 922 104 55 0 chr6 80532659 80532823 -108746731 + MER53 DNA DNA 7 179 -10 345 132 0 29 chr6 80532896 80532964 -108746590 - MER61A LTR ERV1 -277 66 1 18602 91 22 9 chr6 80532964 80535553 -108744001 - MER61A-int LTR ERV1 0 5217 2596 5408 59 44 17 chr6 80535553 80536299 -108743255 + MER4E LTR ERV1 1 766 0 2604 101 138 3 chr6 80536299 80536775 -108742779 - MER61A-int LTR ERV1 -3311 1906 1320 * 2949 182 52 30 chr6 80536760 80537497 -108742057 - MER61A-int LTR ERV1 -4430 787 1 1819 129 71 21 chr6 80537497 80537823 -108741731 - MER61A LTR ERV1 0 343 2 1164 243 58 40 chr6 80537830 80538230 -108741324 - L1ME3 LINE L1 -263 5899 5493 1345 244 53 13 chr6 80538301 80538357 -108741197 - L1ME LINE L1 -538 5632 5580 2891 13 0 0 chr6 80538357 80538673 -108740881 + AluYb8 SINE Alu 1 316 -2 1345 244 53 13 chr6 80538673 80539412 -108740142 - L1ME LINE L1 -590 5580 4817 697 239 70 33 chr6 80539465 80539560 -108739994 - L1ME LINE L1 -1428 4718 4628 270 0 0 0 chr6 80539560 80539590 -108739964 + (CA)n Simple_repeat Simple_repeat 2 31 0 697 239 70 33 chr6 80539590 80539766 -108739788 - L1ME LINE L1 -1518 4628 4437 467 250 31 8 chr6 80540808 80540936 -108738618 - MIR SINE MIR 0 262 132 1990 128 40 7 chr6 80541257 80541554 -108738000 - AluSx SINE Alu -5 307 1 21 36 0 0 chr6 80541647 80541675 -108737879 + AT_rich Low_complexity Low_complexity 1 28 0 223 248 23 15 chr6 80541768 80541847 -108737707 + CT-rich Low_complexity Low_complexity 1 79 0 2882 172 6 15 chr6 80544679 80545149 -108734405 - HERVL18 LTR ERVL -1188 4859 4394 2777 225 43 64 chr6 80545154 80546029 -108733525 - HERVL18 LTR ERVL -2471 3576 2720 580 174 38 22 chr6 80546000 80546190 -108733364 - HERVL18 LTR ERVL -3565 2482 2228 * 6144 207 21 3 chr6 80546176 80547316 -108732238 - HERVL18 LTR ERVL -4886 1161 1 2646 145 150 26 chr6 80547353 80547892 -108731662 - LTR18B LTR ERVL -8 606 1 321 222 111 0 chr6 80548533 80548614 -108730940 + MER117 DNA MER1_type 42 131 -66 2412 59 0 59 chr6 80549268 80549590 -108729964 - AluSx SINE Alu -9 303 1 341 324 18 9 chr6 80549971 80550082 -108729472 - L2 LINE L2 0 3272 3161 22 35 0 0 chr6 80551099 80551128 -108728426 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr6 80551534 80551556 -108727998 + AT_rich Low_complexity Low_complexity 1 22 0 205 362 160 0 chr6 80552099 80552193 -108727361 + L2 LINE L2 3156 3264 -8 331 300 93 7 chr6 80552474 80552614 -108726940 - MIR SINE MIR -83 179 28 247 332 40 15 chr6 80553860 80554062 -108725492 + L2 LINE L2 1527 1733 -1581 1965 152 0 10 chr6 80554966 80555269 -108724285 + AluJb SINE Alu 1 300 -12 245 300 133 44 chr6 80555640 80555820 -108723734 - L2 LINE L2 -215 3057 2862 2474 66 7 0 chr6 80558095 80558396 -108721158 - AluY SINE Alu -8 303 1 542 103 0 0 chr6 80558432 80558510 -108721044 + L1PA10 LINE L1 6087 6164 -4 356 354 41 0 chr6 80559048 80559195 -108720359 + MIR3 SINE MIR 33 185 -23 1439 288 66 56 chr6 80559587 80559882 -108719672 - L2 LINE L2 -1 3312 3021 1477 117 36 5 chr6 80559882 80560105 -108719449 + MER30 DNA MER1_type 1 230 0 1439 288 66 56 chr6 80560105 80560574 -108718980 - L2 LINE L2 -292 3021 2539 1647 179 0 30 chr6 80560574 80560876 -108718678 + AluJb SINE Alu 1 293 -19 1439 288 66 56 chr6 80560876 80561160 -108718394 - L2 LINE L2 -774 2539 2259 290 252 39 39 chr6 80562229 80562356 -108717198 - L1ME4a LINE L1 -8 6113 5987 319 272 0 22 chr6 80563057 80563149 -108716405 - L1MC4 LINE L1 -1339 6703 6614 250 227 207 53 chr6 80563558 80563708 -108715846 + MIR SINE MIR 63 235 -27 1646 147 29 62 chr6 80564511 80564817 -108714737 - AluJo SINE Alu -16 296 1 185 289 0 60 chr6 80565013 80565096 -108714458 + L3 LINE CR1 805 882 -695 183 373 13 27 chr6 80565226 80565301 -108714253 + L2 LINE L2 3104 3177 -95 316 319 18 18 chr6 80565622 80565735 -108713819 - L2 LINE L2 0 3313 3201 2014 134 6 34 chr6 80565913 80566233 -108713321 - AluSx SINE Alu -1 311 1 1638 157 63 0 chr6 80566233 80566533 -108713021 - L1MB1 LINE L1 -108 6060 5742 448 288 34 20 chr6 80566669 80566815 -108712739 - MIR3 SINE MIR -55 153 6 246 349 48 0 chr6 80567167 80567313 -108712241 + MIR SINE MIR 97 249 -13 497 172 34 10 chr6 80567500 80567627 -108711927 + L1ME3A LINE L1 5833 5962 -208 240 258 17 67 chr6 80567733 80567853 -108711701 + L1ME3A LINE L1 5969 6082 -88 386 151 151 56 chr6 80568899 80569078 -108710476 + Charlie5 DNA MER1_type 2386 2581 -31 2360 82 0 0 chr6 80570286 80570580 -108708974 - AluSg SINE Alu -16 294 1 1867 116 52 0 chr6 80571102 80571409 -108708145 + AluSx SINE Alu 1 321 0 823 165 8 8 chr6 80572207 80572340 -108707214 + AluSq/x SINE Alu 1 133 -180 268 319 14 0 chr6 80572467 80572539 -108707015 - MIR SINE MIR -142 120 48 372 227 104 45 chr6 80572974 80573128 -108706426 - MIR SINE MIR -51 211 49 1838 110 4 0 chr6 80573204 80573449 -108706105 + AluSx SINE Alu 1 246 -66 258 95 0 0 chr6 80573508 80573550 -108706004 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 247 259 122 61 chr6 80573866 80573997 -108705557 + HAL1b LINE L1 751 889 -459 2047 99 3 11 chr6 80574295 80574577 -108704977 - AluSg SINE Alu -28 282 3 1956 87 0 0 chr6 80578220 80578462 -108701092 + AluSc SINE Alu 46 287 -22 234 150 0 0 chr6 80578871 80578911 -108700643 + (CATATA)n Simple_repeat Simple_repeat 4 43 0 288 0 0 0 chr6 80578911 80578943 -108700611 + (TG)n Simple_repeat Simple_repeat 2 33 0 8301 55 11 3 chr6 80579035 80580911 -108698643 + L1PA6 LINE L1 4290 6154 0 25 0 0 0 chr6 80582648 80582673 -108696881 + AT_rich Low_complexity Low_complexity 1 25 0 4658 136 12 31 chr6 80583185 80583282 -108696272 + L1MA8 LINE L1 4613 4710 -1581 2053 150 0 6 chr6 80583282 80583596 -108695958 + AluSx SINE Alu 1 312 0 4658 136 12 31 chr6 80583596 80584966 -108694588 + L1MA8 LINE L1 4710 6048 -243 1211 35 0 0 chr6 80585068 80585209 -108694345 + HERVK9 LTR ERVK 427 567 -5349 9247 62 15 1 chr6 80585211 80586378 -108693176 + HERVK9 LTR ERVK 1113 2296 -3620 3941 129 8 2 chr6 80586354 80586941 -108692613 + HERVK9 LTR ERVK 5044 5634 -282 * 2166 111 19 17 chr6 80586966 80587319 -108692235 + HERVK9 LTR ERVK 5635 5916 0 718 135 12 68 chr6 80587322 80587485 -108692069 + MER9 LTR ERVK 3 156 -355 330 267 78 63 chr6 80587592 80587783 -108691771 + HAL1 LINE L1 940 1133 -1374 1547 241 90 44 chr6 80587820 80588541 -108691013 + HAL1 LINE L1 1074 1827 -680 21 0 0 0 chr6 80589268 80589289 -108690265 + AT_rich Low_complexity Low_complexity 1 21 0 295 355 41 8 chr6 80589502 80589623 -108689931 - L2 LINE L2 -203 3069 2945 664 174 0 0 chr6 80589700 80589809 -108689745 + L1M3 LINE L1 5506 5614 -557 551 192 9 2 chr6 80589825 80590043 -108689511 + AluJ SINE Alu 12 271 -41 390 80 0 0 chr6 80590143 80590193 -108689361 - THE1B LTR MaLR -314 50 1 1806 132 37 4 chr6 80591211 80591509 -108688045 + AluJb SINE Alu 3 309 0 21 0 0 0 chr6 80591743 80591764 -108687790 + AT_rich Low_complexity Low_complexity 1 21 0 1057 246 103 66 chr6 80591764 80592190 -108687364 - MLT1J1 LTR MaLR 0 446 5 376 250 45 38 chr6 80592447 80592579 -108686975 + L2 LINE L2 3126 3258 -55 289 260 98 41 chr6 80592969 80593092 -108686462 - L2 LINE L2 0 3272 3143 414 0 0 0 chr6 80593408 80593454 -108686100 + (CA)n Simple_repeat Simple_repeat 2 47 0 249 333 56 24 chr6 80593744 80593870 -108685684 - L2 LINE L2 -557 2757 2628 207 209 0 0 chr6 80594171 80594214 -108685340 + T-rich Low_complexity Low_complexity 4 46 0 257 345 35 11 chr6 80594807 80594894 -108684660 - MIR SINE MIR -77 131 43 2183 94 3 10 chr6 80595035 80595332 -108684222 + AluY SINE Alu 3 297 -14 36 23 0 0 chr6 80596474 80596517 -108683037 + AT_rich Low_complexity Low_complexity 1 43 0 1159 266 112 39 chr6 80596719 80597201 -108682353 + MLT1H LTR MaLR 5 521 -28 606 256 38 33 chr6 80597948 80598051 -108681503 + MLT1H LTR MaLR 111 212 -337 2298 102 0 0 chr6 80598051 80598355 -108681199 - AluSx SINE Alu -8 304 1 606 256 38 33 chr6 80598355 80598462 -108681092 + MLT1H LTR MaLR 212 322 -227 2304 98 0 19 chr6 80598862 80599179 -108680375 - AluSx SINE Alu -1 311 1 22 35 0 0 chr6 80599830 80599859 -108679695 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr6 80599911 80599943 -108679611 + AT_rich Low_complexity Low_complexity 1 32 0 2291 97 7 3 chr6 80600858 80601157 -108678397 - AluSg SINE Alu -10 300 1 1069 120 17 26 chr6 80601158 80601335 -108678219 + THE1B LTR MaLR 197 362 -2 340 246 132 0 chr6 80601336 80601450 -108678104 + MIR SINE MIR 131 259 -3 543 153 0 0 chr6 80601637 80601722 -108677832 - AluS SINE Alu -224 88 4 1346 218 87 62 chr6 80601922 80602371 -108677183 + LTR40a LTR ERVL 1 460 -2 2807 25 0 0 chr6 80602838 80603155 -108676399 - AluYb8 SINE Alu -1 317 1 287 111 0 37 chr6 80603210 80603264 -108676290 + (TATG)n Simple_repeat Simple_repeat 2 53 0 187 237 0 0 chr6 80603684 80603722 -108675832 + MIR SINE MIR 110 147 -115 * 275 246 72 0 chr6 80603720 80603789 -108675765 - L2 LINE L2 0 3313 3240 190 73 49 0 chr6 80603862 80603903 -108675651 + (TA)n Simple_repeat Simple_repeat 2 44 0 288 310 39 0 chr6 80604161 80604290 -108675264 - L1ME2 LINE L1 -223 5941 5808 988 234 47 29 chr6 80604361 80604739 -108674815 + LTR16C LTR ERVL 50 491 0 682 303 84 4 chr6 80606027 80606265 -108673289 + MIR SINE MIR 6 262 0 2514 116 8 0 chr6 80606437 80606792 -108672762 + THE1C LTR MaLR 18 375 0 224 312 167 30 chr6 80606803 80607037 -108672517 - L2 LINE L2 -954 2360 2095 545 209 9 0 chr6 80607109 80607219 -108672335 + AluJ SINE Alu 1 111 -201 299 295 8 8 chr6 80607231 80607353 -108672201 + (TA)n Simple_repeat Simple_repeat 1 122 0 2604 103 31 5 chr6 80607512 80607900 -108671654 + MER48 LTR ERV1 1 398 0 1661 173 54 7 chr6 80609217 80609512 -108670042 - AluJo SINE Alu -3 309 1 23 86 0 0 chr6 80610114 80610172 -108669382 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr6 80610486 80610508 -108669046 + AT_rich Low_complexity Low_complexity 1 22 0 810 171 16 0 chr6 80610512 80610641 -108668913 - AluJo SINE Alu -133 179 49 34 65 0 0 chr6 80611099 80611161 -108668393 + AT_rich Low_complexity Low_complexity 1 62 0 22 0 0 0 chr6 80613118 80613140 -108666414 + AT_rich Low_complexity Low_complexity 1 22 0 2755 120 10 2 chr6 80613214 80613607 -108665947 + MSTA LTR MaLR 33 428 0 2348 166 24 9 chr6 80614639 80615096 -108664458 + L1MB8 LINE L1 5714 6177 -1 613 301 89 8 chr6 80616870 80617106 -108662448 - HAL1 LINE L1 -1589 918 664 235 94 0 0 chr6 80617106 80617138 -108662416 - LTR40b LTR ERVL 0 462 431 1952 228 39 58 chr6 80617159 80617673 -108661881 + LTR40a LTR ERVL 14 517 -2 683 313 101 7 chr6 80617678 80617956 -108661598 - HAL1 LINE L1 -1842 665 362 807 264 47 60 chr6 80617957 80618256 -108661298 + L2 LINE L2 3019 3313 0 181 276 17 17 chr6 80618528 80618586 -108660968 - L2 LINE L2 -788 2526 2469 * 503 239 43 8 chr6 80618562 80618679 -108660875 - MIR SINE MIR -140 122 2 394 255 0 0 chr6 80618721 80618819 -108660735 - L2 LINE L2 -1230 2084 1987 700 134 5 34 chr6 80618821 80619009 -108660545 + AluJ SINE Alu 91 312 0 536 238 87 0 chr6 80619053 80619179 -108660375 - L2 LINE L2 -1337 1977 1841 642 145 145 0 chr6 80619185 80619309 -108660245 - MLT1F1 LTR MaLR -13 554 413 2183 108 3 7 chr6 80619346 80619641 -108659913 - AluSq SINE Alu -17 296 3 441 255 41 0 chr6 80619659 80619757 -108659797 - MLT1F LTR MaLR -440 102 1 286 257 79 0 chr6 80619758 80619859 -108659695 - L2 LINE L2 -1471 1843 1735 970 165 6 6 chr6 80622628 80622786 -108656768 - AluJb SINE Alu -3 309 152 237 33 0 0 chr6 80622786 80622816 -108656738 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1817 161 7 0 chr6 80622816 80623096 -108656458 - AluSx SINE Alu -30 282 1 1298 236 82 120 chr6 80623422 80623633 -108655921 + L1MC5 LINE L1 5283 5501 -2460 1166 186 26 117 chr6 80623633 80624010 -108655544 - MER7A DNA MER2_type -1 345 5 1298 236 82 120 chr6 80624010 80625240 -108654314 + L1MC5 LINE L1 5501 6777 -1184 2325 88 0 0 chr6 80625240 80625534 -108654020 + AluSg SINE Alu 5 298 -12 1298 236 82 120 chr6 80625534 80625815 -108653739 + L1MC5 LINE L1 6777 6898 -1063 2039 134 20 0 chr6 80625815 80626107 -108653447 - AluSx SINE Alu -14 298 1 1298 236 82 120 chr6 80626107 80626376 -108653178 + L1MC5 LINE L1 6898 7176 -785 22 0 0 0 chr6 80626526 80626548 -108653006 + AT_rich Low_complexity Low_complexity 1 22 0 2492 102 17 11 chr6 80628308 80628670 -108650884 - THE1B LTR MaLR 0 364 1 314 280 50 10 chr6 80629083 80629183 -108650371 + L2 LINE L2 2471 2574 -740 1160 286 54 23 chr6 80629183 80629758 -108649796 + L2 LINE L2 2719 3313 0 197 394 32 0 chr6 80630002 80630096 -108649458 + MIR SINE MIR 13 109 -153 23 68 0 0 chr6 80630642 80630686 -108648868 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr6 80633624 80633652 -108645902 + GC_rich Low_complexity Low_complexity 1 28 0 798 73 65 0 chr6 80634378 80634502 -108645052 + L1MB3 LINE L1 6044 6175 -8 2051 133 0 13 chr6 80634610 80634918 -108644636 - AluSx SINE Alu -8 304 1 232 333 12 12 chr6 80635243 80635327 -108644227 - L2 LINE L2 -5 3267 3184 347 266 37 115 chr6 80635711 80635929 -108643625 - L2 LINE L2 -36 3236 3036 1964 125 4 0 chr6 80635991 80636270 -108643284 + AluSx SINE Alu 11 290 -22 186 103 0 0 chr6 80636278 80636307 -108643247 + (CAA)n Simple_repeat Simple_repeat 2 30 0 220 279 161 36 chr6 80636353 80636536 -108643018 + MIR SINE MIR 3 202 -6 2297 104 0 0 chr6 80636895 80637203 -108642351 + AluSg SINE Alu 1 308 -2 236 267 23 0 chr6 80637385 80637471 -108642083 + L1MC4 LINE L1 6614 6701 -1341 493 199 42 21 chr6 80637494 80637646 -108641908 - L1PA16 LINE L1 -54 6111 5952 711 291 0 19 chr6 80638057 80638318 -108641236 - L1M4 LINE L1 -3624 2522 2267 421 328 128 55 chr6 80638443 80639043 -108640511 + L2 LINE L2 2234 2877 -437 1558 170 0 48 chr6 80639293 80639564 -108639990 - AluJb SINE Alu -20 292 35 4898 193 13 19 chr6 80639590 80640888 -108638666 + L1MA9 LINE L1 4985 6274 -38 1798 173 3 3 chr6 80640905 80641189 -108638365 - AluJo SINE Alu -24 288 5 476 326 0 0 chr6 80641497 80641675 -108637879 + (TA)n Simple_repeat Simple_repeat 2 179 0 268 210 0 34 chr6 80641689 80641808 -108637746 + (TATATG)n Simple_repeat Simple_repeat 1 115 0 29 0 0 0 chr6 80642083 80642112 -108637442 + AT_rich Low_complexity Low_complexity 1 29 0 30 59 0 0 chr6 80642267 80642318 -108637236 + AT_rich Low_complexity Low_complexity 1 51 0 2347 109 0 0 chr6 80642425 80642728 -108636826 - AluSx SINE Alu -9 303 1 313 156 121 43 chr6 80642975 80643067 -108636487 - MLT1G1 LTR MaLR 0 595 407 3461 231 76 25 chr6 80643068 80644050 -108635504 + L1M4 LINE L1 45 976 -5670 11169 42 1 0 chr6 80644050 80646178 -108633376 - L1PA5 LINE L1 -2 6152 4011 3461 231 76 25 chr6 80646178 80647230 -108632324 + L1M4 LINE L1 976 2176 -4470 206 289 0 0 chr6 80648400 80648452 -108631102 - L2 LINE L2 0 3313 3262 30 97 0 0 chr6 80649009 80649102 -108630452 + AT_rich Low_complexity Low_complexity 1 93 0 234 0 0 0 chr6 80649104 80649130 -108630424 + (CA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr6 80649757 80649780 -108629774 + AT_rich Low_complexity Low_complexity 1 23 0 1917 102 72 0 chr6 80650485 80650776 -108628778 + AluY SINE Alu 1 310 0 191 260 80 0 chr6 80651411 80651461 -108628093 + L2 LINE L2 3250 3303 -10 27 0 0 0 chr6 80651589 80651616 -108627938 + AT_rich Low_complexity Low_complexity 1 27 0 193 257 55 92 chr6 80653356 80653465 -108626089 - L2 LINE L2 0 3272 3168 824 57 0 0 chr6 80655666 80655772 -108623782 - L1PA11 LINE L1 -1 6173 6068 260 236 79 34 chr6 80657121 80657210 -108622344 - L2 LINE L2 -11 3261 3169 626 313 43 0 chr6 80659254 80659465 -108620089 - MIR SINE MIR -3 259 40 272 203 109 0 chr6 80659615 80659679 -108619875 - MIR SINE MIR -114 148 78 * 285 293 60 17 chr6 80659676 80659792 -108619762 + MIR SINE MIR 18 138 -124 404 301 63 28 chr6 80660231 80660374 -108619180 - L2 LINE L2 0 3272 3125 235 281 62 25 chr6 80661117 80661306 -108618248 + MIR SINE MIR 3 251 -11 2136 117 0 3 chr6 80661639 80661937 -108617617 - AluSx SINE Alu -14 298 2 5754 161 20 14 chr6 80662189 80662681 -108616873 - L1MA5 LINE L1 -8 6292 5805 330 26 0 0 chr6 80662681 80662720 -108616834 + (TG)n Simple_repeat Simple_repeat 2 40 0 5754 161 20 14 chr6 80662720 80663714 -108615840 - L1MA5 LINE L1 -495 5805 4786 412 287 75 55 chr6 80663838 80664250 -108615304 + L2 LINE L2 2708 3181 -132 1030 214 13 39 chr6 80666808 80667037 -108612517 + MER58A DNA MER1_type 2 224 0 21 36 0 0 chr6 80667186 80667214 -108612340 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr6 80669455 80669499 -108610055 + AT_rich Low_complexity Low_complexity 1 44 0 378 0 0 0 chr6 80670623 80670665 -108608889 + (CA)n Simple_repeat Simple_repeat 1 42 0 556 322 84 0 chr6 80671116 80671318 -108608236 + MIR SINE MIR 30 248 -14 246 88 0 0 chr6 80671410 80671444 -108608110 - U2 snRNA snRNA -153 35 2 540 250 77 77 chr6 80671610 80671870 -108607684 - MIR SINE MIR 0 262 3 25 0 0 0 chr6 80672368 80672393 -108607161 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 80672426 80672448 -108607106 + AT_rich Low_complexity Low_complexity 1 22 0 325 333 47 16 chr6 80674205 80674334 -108605220 + L2 LINE L2 3132 3264 -8 687 308 160 22 chr6 80675359 80675471 -108604083 + L3 LINE CR1 904 999 -578 396 0 0 0 chr6 80675471 80675515 -108604039 + (TG)n Simple_repeat Simple_repeat 2 45 0 204 40 0 0 chr6 80675516 80675541 -108604013 + (GA)n Simple_repeat Simple_repeat 2 26 0 687 308 160 22 chr6 80675541 80675832 -108603722 + L3 LINE CR1 998 1365 -212 195 129 0 0 chr6 80676049 80676080 -108603474 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 206 229 16 33 chr6 80679290 80679351 -108600203 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 212 292 94 42 chr6 80679416 80679512 -108600042 + MIR SINE MIR 1 101 -161 328 301 113 0 chr6 80679643 80679776 -108599778 + MIR SINE MIR 6 153 -109 2467 39 10 16 chr6 80680572 80680879 -108598675 - AluY SINE Alu -6 305 1 251 313 23 11 chr6 80681645 80681821 -108597733 + (TA)n Simple_repeat Simple_repeat 1 178 0 273 196 0 0 chr6 80682048 80682099 -108597455 + L2 LINE L2 3222 3272 0 279 309 0 0 chr6 80682463 80682547 -108597007 - MIR SINE MIR -77 185 102 721 294 155 2 chr6 80683218 80683670 -108595884 - LTR33 LTR ERVL 0 521 1 5206 52 14 9 chr6 80686086 80686740 -108592814 + SVA Other Other 730 1386 0 433 281 82 0 chr6 80688927 80689062 -108590492 + MIR SINE MIR 48 193 -69 508 284 28 7 chr6 80689239 80689380 -108590174 - MLT1H LTR MaLR 0 549 406 1185 201 107 29 chr6 80689426 80689734 -108589820 - MER2 DNA MER2_type -13 332 1 1419 244 14 22 chr6 80689757 80690114 -108589440 - MLT1H LTR MaLR -195 354 1 24 0 0 0 chr6 80690118 80690142 -108589412 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr6 80691080 80691103 -108588451 + (GA)n Simple_repeat Simple_repeat 2 24 0 300 299 10 0 chr6 80691149 80691246 -108588308 - L1ME LINE L1 -284 5837 5740 300 332 52 26 chr6 80691276 80691469 -108588085 - L2 LINE L2 -1410 1904 1707 843 326 116 22 chr6 80691702 80692415 -108587139 + L2 LINE L2 2514 3294 -19 28 29 0 0 chr6 80692623 80692658 -108586896 + AT_rich Low_complexity Low_complexity 1 35 0 2413 82 0 3 chr6 80694755 80695061 -108584493 - AluY SINE Alu -6 305 1 628 345 79 42 chr6 80695492 80695895 -108583659 - L3 LINE CR1 -722 855 438 255 287 200 41 chr6 80695939 80696134 -108583420 - L3 LINE CR1 -1249 328 103 247 329 224 25 chr6 80696343 80696665 -108582889 - L2 LINE L2 0 3272 2887 4797 38 0 12 chr6 80696942 80697528 -108582026 + L1PA4 LINE L1 5573 6151 -4 213 219 0 0 chr6 80698162 80698203 -108581351 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 246 143 0 0 chr6 80698203 80698252 -108581302 + (GA)n Simple_repeat Simple_repeat 2 50 0 730 311 78 46 chr6 80698420 80699072 -108580482 + L1MC4a LINE L1 2864 3536 -2610 26 30 0 0 chr6 80699172 80699205 -108580349 + AT_rich Low_complexity Low_complexity 1 33 0 413 266 87 25 chr6 80699209 80699450 -108580104 + L1MC4a LINE L1 3722 3977 -2169 797 306 95 48 chr6 80699676 80700391 -108579163 + L1MC4a LINE L1 4279 5027 -1119 391 268 71 51 chr6 80700623 80700978 -108578576 + L1MC4a LINE L1 5301 5670 -540 267 350 36 5 chr6 80701173 80701367 -108578187 + L1MC4a LINE L1 5711 5910 -1898 37 102 0 0 chr6 80701584 80701712 -108577842 + AT_rich Low_complexity Low_complexity 1 128 0 23 68 0 0 chr6 80701823 80701867 -108577687 + AT_rich Low_complexity Low_complexity 1 44 0 550 135 0 0 chr6 80702133 80702222 -108577332 - AluSg/x SINE Alu -5 307 219 1950 106 4 0 chr6 80702222 80702487 -108577067 - AluSg SINE Alu -44 266 1 2418 265 87 36 chr6 80702574 80702639 -108576915 - L1M4 LINE L1 -1453 4693 4633 2329 71 0 0 chr6 80702639 80702980 -108576574 + AluY SINE Alu 1 341 0 2418 265 87 36 chr6 80702980 80704069 -108575485 - L1M4 LINE L1 -1513 4633 3480 551 310 74 37 chr6 80704345 80704832 -108574722 - HAL1b LINE L1 -440 908 404 372 94 0 0 chr6 80706170 80706223 -108573331 + (TA)n Simple_repeat Simple_repeat 1 53 0 435 335 39 28 chr6 80706344 80706526 -108573028 + MER5A DNA MER1_type 1 184 -5 906 149 14 0 chr6 80706843 80706863 -108572691 - AluJb SINE Alu -7 305 287 216 0 0 0 chr6 80706863 80706887 -108572667 + (TTGTG)n Simple_repeat Simple_repeat 2 25 0 906 149 14 0 chr6 80706887 80707014 -108572540 - AluJb SINE Alu -25 287 156 581 324 6 60 chr6 80708648 80708997 -108570557 + L2 LINE L2 2170 2499 -815 1264 82 71 0 chr6 80709435 80709617 -108569937 - MER30 DNA MER1_type -35 195 1 596 282 139 5 chr6 80709676 80709885 -108569669 + MIR SINE MIR 18 254 -8 1796 202 84 76 chr6 80710076 80710837 -108568717 - L1MC5 LINE L1 -52 7909 7143 5715 129 21 15 chr6 80710838 80712389 -108567165 - L1PA15 LINE L1 -6 6159 4597 7670 200 8 7 chr6 80712436 80714063 -108565491 - L1PA15 LINE L1 -1527 4619 2992 343 226 28 0 chr6 80716867 80716973 -108562581 + (TATG)n Simple_repeat Simple_repeat 2 110 0 240 35 0 0 chr6 80716975 80717004 -108562550 + (GA)n Simple_repeat Simple_repeat 2 30 0 262 147 23 112 chr6 80717283 80717363 -108562191 + AluSg/x SINE Alu 121 183 -117 1639 262 66 25 chr6 80717383 80718181 -108561373 + L1M4 LINE L1 1071 1901 -4641 216 0 0 0 chr6 80718223 80718247 -108561307 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1947 147 10 10 chr6 80718311 80718623 -108560931 + AluSx SINE Alu 1 312 0 302 265 123 12 chr6 80718686 80718848 -108560706 - L1MC4 LINE L1 -1 8041 7862 1908 107 96 0 chr6 80718900 80719171 -108560383 - AluSg SINE Alu -13 297 1 1725 168 14 21 chr6 80719200 80719491 -108560063 + AluJb SINE Alu 3 291 -21 26223 133 13 25 chr6 80719831 80724783 -108554771 - L1PA8A LINE L1 -2 6444 1512 2076 84 7 11 chr6 80724783 80725058 -108554496 - AluY SINE Alu -15 296 23 26223 133 13 25 chr6 80725058 80726549 -108553005 - L1PA8A LINE L1 -4934 1512 4 24 0 0 0 chr6 80726549 80726573 -108552981 + AT_rich Low_complexity Low_complexity 1 24 0 376 313 100 21 chr6 80726650 80726977 -108552577 + L1M4 LINE L1 2111 2475 -4065 616 219 19 0 chr6 80727012 80727172 -108552382 - L1M4 LINE L1 -1054 5092 4930 * 7467 237 104 38 chr6 80727162 80730287 -108549267 + L1M4 LINE L1 2511 5826 -742 42978 36 21 2 chr6 80730296 80736501 -108543053 + L1HS LINE L1 1 6155 0 3114 224 72 11 chr6 80736517 80737447 -108542107 + L1ME1 LINE L1 5176 6162 -4 793 329 166 22 chr6 80737468 80738531 -108541023 - L2 LINE L2 -1052 2262 976 899 329 25 18 chr6 80738532 80738924 -108540630 - LTR16C LTR ERVL 0 491 97 414 299 39 7 chr6 80739122 80739276 -108540278 + MIR SINE MIR 79 237 -25 214 313 52 45 chr6 80739527 80739661 -108539893 - L3b LINE CR1 -6 1577 1443 405 295 43 14 chr6 80739728 80739867 -108539687 - L3b LINE CR1 -166 1417 1275 274 330 19 10 chr6 80740438 80740541 -108539013 - L3 LINE CR1 -737 840 737 989 192 79 5 chr6 80740563 80740766 -108538788 + MER20 DNA MER1_type 1 218 -1 184 172 35 0 chr6 80740773 80740831 -108538723 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 208 318 83 95 chr6 80740835 80741162 -108538392 - L3 LINE CR1 -1023 554 232 869 147 102 46 chr6 80741608 80741805 -108537749 + MER3 DNA MER1_type 1 208 -1 277 255 69 28 chr6 80742265 80742410 -108537144 - L1ME4a LINE L1 -8 6113 5963 706 229 64 96 chr6 80742669 80743014 -108536540 - L1ME4a LINE L1 -227 5894 5561 2213 109 3 10 chr6 80743082 80743384 -108536170 - AluSx SINE Alu -12 300 1 429 36 0 0 chr6 80744531 80744586 -108534968 + (TG)n Simple_repeat Simple_repeat 1 55 0 2450 46 0 20 chr6 80744972 80745277 -108534277 - AluY SINE Alu -11 300 2 209 217 109 0 chr6 80745380 80745426 -108534128 - L2 LINE L2 -3 3269 3219 207 353 241 0 chr6 80745586 80745702 -108533852 + L2 LINE L2 3122 3265 -7 369 255 57 38 chr6 80747321 80747478 -108532076 - MER20 DNA MER1_type 0 219 60 270 56 0 0 chr6 80747506 80747542 -108532012 + (TG)n Simple_repeat Simple_repeat 1 36 0 631 211 8 8 chr6 80747816 80747939 -108531615 + MIR SINE MIR 31 153 -109 541 251 0 76 chr6 80747944 80748007 -108531547 + MIR SINE MIR 105 171 -91 3231 147 128 22 chr6 80748007 80748717 -108530837 - LTR48 LTR ERV1 0 787 3 541 251 0 76 chr6 80748717 80748824 -108530730 + MIR SINE MIR 171 262 0 28 29 0 0 chr6 80749164 80749199 -108530355 + AT_rich Low_complexity Low_complexity 1 35 0 261 256 285 7 chr6 80749827 80749964 -108529590 - MIR SINE MIR -6 256 82 186 171 29 0 chr6 80750529 80750564 -108528990 + L2 LINE L2 3278 3313 0 806 322 78 34 chr6 80750640 80751140 -108528414 + L2 LINE L2 2376 2897 -417 337 216 134 0 chr6 80751185 80751282 -108528272 - L1MA4A LINE L1 -1 6302 6193 2125 160 12 8 chr6 80751290 80751691 -108527863 - L1MA4A LINE L1 -181 6122 5720 184 329 26 0 chr6 80751708 80751784 -108527770 + L2 LINE L2 3022 3099 -214 2112 147 39 85 chr6 80751865 80752347 -108527207 - MER31B LTR ERV1 -1 465 6 1187 169 29 62 chr6 80752391 80752699 -108526855 - MER33 DNA MER1_type -10 314 17 438 294 34 7 chr6 80755974 80756120 -108523434 - MIR3 SINE MIR -9 199 50 2290 84 0 0 chr6 80757100 80757404 -108522150 - AluSx SINE Alu 0 304 1 23 0 0 0 chr6 80757417 80757440 -108522114 + AT_rich Low_complexity Low_complexity 1 23 0 590 281 53 23 chr6 80758166 80758337 -108521217 - MER5B DNA MER1_type -1 177 2 319 297 22 0 chr6 80758657 80758748 -108520806 - MER5A DNA MER1_type -83 106 14 1470 74 55 20 chr6 80758816 80759018 -108520536 + AluSc SINE Alu 84 292 -17 673 256 17 6 chr6 80759022 80759194 -108520360 + MER5B DNA MER1_type 2 175 -3 1814 177 0 10 chr6 80759709 80760014 -108519540 - AluJo SINE Alu -10 302 1 420 303 62 28 chr6 80761416 80761627 -108517927 - MIR SINE MIR -27 235 18 22 56 0 0 chr6 80761638 80761674 -108517880 + AT_rich Low_complexity Low_complexity 1 36 0 1673 149 14 58 chr6 80761718 80762037 -108517517 + AluSx SINE Alu 1 306 0 12536 121 41 33 chr6 80762226 80763132 -108516422 - Tigger1 DNA MER2_type -1 2417 1520 2541 58 0 3 chr6 80763132 80763440 -108516114 - AluY SINE Alu -4 307 1 12536 121 41 33 chr6 80763440 80764625 -108514929 - Tigger1 DNA MER2_type -898 1520 309 2585 262 55 38 chr6 80764638 80764981 -108514573 - L1ME LINE L1 -4981 1089 753 2245 112 3 0 chr6 80764981 80765284 -108514270 + AluSp SINE Alu 3 306 -7 2585 262 55 38 chr6 80765284 80766002 -108513552 - L1ME LINE L1 -5317 753 10 977 289 98 3 chr6 80766096 80766432 -108513122 + L2 LINE L2 2510 2877 -437 21 0 0 0 chr6 80767094 80767115 -108512439 + AT_rich Low_complexity Low_complexity 1 21 0 749 167 0 0 chr6 80767291 80767411 -108512143 + LTR45 LTR ERV1 406 525 0 4496 173 38 14 chr6 80767411 80768202 -108511352 + MER21B LTR ERV1 5 814 -49 445 213 25 8 chr6 80768369 80768491 -108511063 + MER113 DNA MER1_type? 1 124 -397 370 323 99 22 chr6 80769957 80770180 -108509374 - MIR SINE MIR -3 259 20 583 253 84 12 chr6 80770189 80770355 -108509199 + MER5B DNA MER1_type 1 178 0 1596 181 7 4 chr6 80770563 80770840 -108508714 - AluJo SINE Alu -26 286 9 2243 110 0 0 chr6 80772441 80772733 -108506821 + AluSx SINE Alu 2 293 -19 968 105 14 7 chr6 80773253 80773396 -108506158 - BC200 scRNA scRNA -55 145 2 1742 179 54 43 chr6 80773800 80774342 -108505212 + MER67C LTR ERV1 1 511 -3 354 316 166 63 chr6 80774358 80774846 -108504708 + L2 LINE L2 1820 2357 -957 2427 122 28 8 chr6 80775071 80775423 -108504131 + THE1B LTR MaLR 6 364 0 274 340 186 12 chr6 80775521 80775934 -108503620 + L2 LINE L2 2569 3058 -214 923 239 5 5 chr6 80776112 80776309 -108503245 + MLT1C LTR MaLR 271 467 0 666 152 23 0 chr6 80778848 80778980 -108500574 - L1MA4 LINE L1 -397 5903 5769 7671 22 6 0 chr6 80778996 80779926 -108499628 - L1PA3 LINE L1 -4 6151 5223 2213 117 0 0 chr6 80782857 80783157 -108496397 - AluSx SINE Alu -12 300 1 724 280 95 0 chr6 80783157 80783389 -108496165 - MIR SINE MIR -3 259 6 226 331 115 54 chr6 80786461 80786609 -108492945 + L2 LINE L2 3108 3264 -8 216 130 0 0 chr6 80787123 80787169 -108492385 + (A)n Simple_repeat Simple_repeat 1 46 0 345 285 177 0 chr6 80787571 80787701 -108491853 - MIR SINE MIR -61 201 49 412 254 164 24 chr6 80788460 80788625 -108490929 - MIR SINE MIR -58 204 17 2093 141 3 3 chr6 80788815 80789127 -108490427 + AluSx SINE Alu 1 312 0 378 0 0 0 chr6 80793382 80793424 -108486130 + (CA)n Simple_repeat Simple_repeat 2 43 0 609 305 77 94 chr6 80793502 80794016 -108485538 + L2 LINE L2 2794 3313 0 267 297 59 0 chr6 80795523 80795624 -108483930 - MIR SINE MIR -96 166 60 402 360 85 0 chr6 80795794 80795983 -108483571 + MIR SINE MIR 21 225 -37 339 25 0 0 chr6 80796604 80796644 -108482910 + (CA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr6 80796930 80796951 -108482603 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 80797128 80797152 -108482402 + AT_rich Low_complexity Low_complexity 1 24 0 1944 87 0 0 chr6 80797510 80797752 -108481802 + AluSc SINE Alu 1 242 -67 22 35 0 0 chr6 80797810 80797839 -108481715 + AT_rich Low_complexity Low_complexity 1 29 0 2118 148 102 10 chr6 80798373 80798765 -108480789 + MSTA LTR MaLR 1 428 0 264 295 153 55 chr6 80799053 80799307 -108480247 - L2 LINE L2 0 3272 2994 366 371 45 35 chr6 80799386 80799926 -108479628 - L2 LINE L2 -453 2861 2225 365 328 94 8 chr6 80799931 80800187 -108479367 - L2 LINE L2 -1191 2123 1846 445 333 8 0 chr6 80801223 80801355 -108478199 + MER5A DNA MER1_type 57 189 0 42 36 0 0 chr6 80801593 80801649 -108477905 + AT_rich Low_complexity Low_complexity 1 56 0 26 0 0 0 chr6 80802158 80802184 -108477370 + AT_rich Low_complexity Low_complexity 1 26 0 1400 102 245 12 chr6 80802188 80802433 -108477121 + AluSx SINE Alu 1 302 -10 2325 115 17 6 chr6 80803356 80803713 -108475841 - MER46B DNA MER2_type 0 236 1 970 106 0 21 chr6 80803883 80804024 -108475530 - FLAM_C SINE Alu 0 143 6 418 179 26 13 chr6 80805362 80805440 -108474114 - MER5A DNA MER1_type -8 181 103 1080 135 6 0 chr6 80805490 80805660 -108473894 + L1MB2 LINE L1 5724 5894 -277 355 129 210 0 chr6 80805668 80805730 -108473824 + AluJb SINE Alu 53 127 -175 260 182 23 0 chr6 80806043 80806087 -108473467 - AluSg/x SINE Alu -122 180 136 698 146 9 0 chr6 80806090 80806200 -108473354 - MER5A DNA MER1_type -77 112 2 3279 181 16 15 chr6 80806466 80806595 -108472959 + L1MB2 LINE L1 5425 5552 -619 1608 143 0 42 chr6 80806595 80806881 -108472673 + AluJb SINE Alu 24 297 -15 3279 142 9 9 chr6 80806881 80807445 -108472109 + L1MB2 LINE L1 5606 6169 -2 3279 181 16 15 chr6 80807445 80807460 -108472094 + L1MB2 LINE L1 5551 6169 -2 872 242 26 22 chr6 80807668 80808064 -108471490 + L1ME3A LINE L1 5735 6170 0 251 319 186 0 chr6 80811491 80811604 -108467950 - L2 LINE L2 -4 3309 3176 623 309 109 0 chr6 80811607 80811817 -108467737 - MIR SINE MIR -27 235 3 379 282 202 26 chr6 80811829 80812219 -108467335 - L2 LINE L2 -137 3176 2735 1824 177 21 6 chr6 80812402 80812741 -108466813 + MER2 DNA MER2_type 1 344 0 1220 155 14 10 chr6 80812776 80812983 -108466571 - AluJo SINE Alu -18 294 87 264 315 174 11 chr6 80814155 80814247 -108465307 - L2 LINE L2 -17 3255 3149 219 326 30 45 chr6 80814579 80814711 -108464843 + MIR SINE MIR 35 164 -98 1133 245 153 32 chr6 80815376 80815794 -108463760 + L2 LINE L2 2759 3234 -79 1017 201 31 45 chr6 80815794 80816018 -108463536 - MER58A DNA MER1_type -1 223 3 1133 245 153 32 chr6 80816018 80816096 -108463458 + L2 LINE L2 3234 3301 -12 213 39 0 0 chr6 80816283 80816309 -108463245 + (TTTTTG)n Simple_repeat Simple_repeat 1 26 0 305 264 176 19 chr6 80816528 80816687 -108462867 - L1ME2 LINE L1 -151 6013 5830 278 304 113 17 chr6 80817638 80817753 -108461801 - MER91A DNA MER1_type -66 130 5 564 273 132 32 chr6 80817866 80818086 -108461468 - MIR SINE MIR -1 261 20 292 244 34 59 chr6 80818461 80818580 -108460974 + MER112 DNA MER1_type 136 251 -9 240 299 0 15 chr6 80818623 80818690 -108460864 + MIR SINE MIR 67 132 -130 493 241 174 10 chr6 80819415 80819610 -108459944 - MER5C DNA MER1_type 0 324 98 1969 132 30 21 chr6 80819887 80820221 -108459333 + MER1B DNA MER1_type 1 337 0 2175 87 7 7 chr6 80820255 80820542 -108459012 + AluSx SINE Alu 1 287 -25 2048 136 3 0 chr6 80823887 80824181 -108455373 - AluSx SINE Alu -17 295 1 884 237 166 31 chr6 80824326 80824676 -108454878 + LTR16A1 LTR ERVL 61 457 0 199 274 59 0 chr6 80824681 80824732 -108454822 + L2 LINE L2 3219 3272 0 2371 108 0 0 chr6 80828438 80828745 -108450809 - AluSx SINE Alu -1 311 5 640 291 0 0 chr6 80829530 80829678 -108449876 - MIR SINE MIR -75 187 40 2047 126 0 0 chr6 80829678 80830006 -108449548 + AluSq SINE Alu 1 328 0 203 239 22 0 chr6 80830006 80830052 -108449502 - MIR SINE MIR -209 53 7 235 279 29 0 chr6 80832157 80832225 -108447329 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 1369 323 99 39 chr6 80832802 80833691 -108445863 + L3 LINE CR1 438 1379 -198 21 0 0 0 chr6 80834900 80834921 -108444633 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 80835006 80835030 -108444524 + AT_rich Low_complexity Low_complexity 1 24 0 559 330 108 26 chr6 80835232 80835695 -108443859 + L2 LINE L2 2077 2577 -737 22 56 0 0 chr6 80836190 80836226 -108443328 + AT_rich Low_complexity Low_complexity 1 36 0 30 77 0 0 chr6 80836298 80836363 -108443191 + AT_rich Low_complexity Low_complexity 1 65 0 28093 39 9 0 chr6 80836364 80840568 -108438986 - L1PA5 LINE L1 -9 6145 1905 21 82 0 0 chr6 80840607 80840656 -108438898 + AT_rich Low_complexity Low_complexity 1 49 0 3681 121 4 2 chr6 80842067 80842589 -108436965 - MER1A DNA MER1_type -4 523 1 24 32 0 0 chr6 80846172 80846203 -108433351 + AT_rich Low_complexity Low_complexity 1 31 0 855 269 18 42 chr6 80846579 80846913 -108432641 + HAL1 LINE L1 1483 1808 -699 2088 143 0 0 chr6 80847160 80847461 -108432093 - AluSx SINE Alu -6 306 6 723 254 179 37 chr6 80847513 80847887 -108431667 - L1MC/D LINE L1 -2035 5773 5347 475 307 86 36 chr6 80847896 80848280 -108431274 - L1MC/D LINE L1 -854 5292 4890 2137 123 7 0 chr6 80848596 80848897 -108430657 - AluSq SINE Alu -10 303 1 315 356 158 14 chr6 80849948 80850170 -108429384 - MIR SINE MIR -6 256 3 384 182 45 11 chr6 80850569 80850657 -108428897 + LTR40a LTR ERVL 1 91 -428 843 267 5 14 chr6 80850664 80850885 -108428669 + HERVL40 LTR ERVL 4239 4457 -1073 * 1258 247 28 6 chr6 80850884 80851227 -108428327 + HERVL40 LTR ERVL 2783 5526 -4 1698 222 148 17 chr6 80851230 80851689 -108427865 + LTR40a LTR ERVL 1 519 0 228 331 136 12 chr6 80851881 80852050 -108427504 - MIR3 SINE MIR -7 201 12 445 305 19 0 chr6 80852431 80852536 -108427018 - L2 LINE L2 -12 3301 3195 588 249 73 0 chr6 80852735 80852900 -108426654 - MIR SINE MIR -3 259 83 182 156 22 0 chr6 80853912 80853957 -108425597 + (TA)n Simple_repeat Simple_repeat 2 47 0 372 306 20 10 chr6 80854460 80854558 -108424996 + L2 LINE L2 3196 3294 -19 2598 132 20 10 chr6 80855621 80856024 -108423530 - LTR45 LTR ERV1 -118 407 1 21 57 0 0 chr6 80856037 80856072 -108423482 + AT_rich Low_complexity Low_complexity 1 35 0 431 286 57 16 chr6 80856286 80856478 -108423076 + L1ME1 LINE L1 5692 5891 -275 609 322 29 5 chr6 80857826 80858034 -108421520 - MIR SINE MIR -21 241 29 208 330 121 11 chr6 80859107 80859198 -108420356 + MER5A DNA MER1_type 65 165 -24 * 490 252 9 9 chr6 80859119 80859230 -108420324 - MER5A DNA MER1_type -75 114 4 449 317 66 12 chr6 80859705 80859872 -108419682 - MIR3 SINE MIR -14 194 19 1418 184 72 31 chr6 80860077 80860397 -108419157 + MER2 DNA MER2_type 2 334 -11 23 0 0 0 chr6 80861238 80861261 -108418293 + AT_rich Low_complexity Low_complexity 1 23 0 251 118 0 0 chr6 80864332 80864366 -108415188 + MER91 DNA MER1_type 72 105 -35 291 93 0 0 chr6 80864716 80864759 -108414795 + (TGAG)n Simple_repeat Simple_repeat 1 43 0 3171 147 16 18 chr6 80865072 80865645 -108413909 + L1PA16 LINE L1 5593 6164 -2 1902 158 0 0 chr6 80865667 80865951 -108413603 - AluJb SINE Alu -10 302 19 22 35 0 0 chr6 80866352 80866381 -108413173 + AT_rich Low_complexity Low_complexity 1 29 0 32 0 0 0 chr6 80866399 80866431 -108413123 + AT_rich Low_complexity Low_complexity 1 32 0 2795 224 87 29 chr6 80867527 80868321 -108411233 - MER21B LTR ERV1 -5 858 19 427 191 11 34 chr6 80868345 80868434 -108411120 - MER21B LTR ERV1 -776 87 1 2277 118 0 0 chr6 80868593 80868897 -108410657 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr6 80868995 80869016 -108410538 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr6 80870992 80871029 -108408525 + AT_rich Low_complexity Low_complexity 1 37 0 204 40 0 0 chr6 80872180 80872205 -108407349 + (CA)n Simple_repeat Simple_repeat 2 26 0 183 270 16 32 chr6 80872252 80872315 -108407239 + L2 LINE L2 3207 3268 -4 26 30 0 0 chr6 80872386 80872419 -108407135 + AT_rich Low_complexity Low_complexity 1 33 0 458 329 42 9 chr6 80872496 80872712 -108406842 - MIR SINE MIR -11 251 30 517 343 137 45 chr6 80873120 80873735 -108405819 - L3 LINE CR1 -785 792 122 4345 27 9 4 chr6 80873912 80874438 -108405116 - L1PA7 LINE L1 -2 6152 5624 2090 167 33 27 chr6 80874469 80875025 -108404529 - MLT2A2 LTR ERVL 0 554 1 182 114 0 29 chr6 80876407 80876442 -108403112 + (TA)n Simple_repeat Simple_repeat 2 35 0 186 43 0 0 chr6 80876443 80876466 -108403088 + (GA)n Simple_repeat Simple_repeat 1 23 0 261 196 0 0 chr6 80879335 80879391 -108400163 + (CA)n Simple_repeat Simple_repeat 1 56 0 283 230 70 0 chr6 80879903 80880003 -108399551 - L1ME4a LINE L1 -2 6119 6013 1812 117 99 40 chr6 80880043 80880395 -108399159 - THE1C LTR MaLR -2 373 1 763 230 87 65 chr6 80880395 80880704 -108398850 + MER46C DNA MER2_type 8 323 -15 1621 130 0 0 chr6 80881435 80881665 -108397889 + L1PB3 LINE L1 5908 6137 -17 29 60 0 0 chr6 80881665 80881715 -108397839 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr6 80882182 80882204 -108397350 + AT_rich Low_complexity Low_complexity 1 22 0 388 144 51 6 chr6 80882476 80882593 -108396961 - MER53 DNA DNA 0 189 1 22 0 0 0 chr6 80882852 80882874 -108396680 + AT_rich Low_complexity Low_complexity 1 22 0 1600 169 7 21 chr6 80883697 80883981 -108395573 - MLT1A1 LTR MaLR -13 352 73 249 276 15 0 chr6 80886158 80886247 -108393307 + MIR SINE MIR 33 123 -85 196 338 56 0 chr6 80887002 80887073 -108392481 + L2 LINE L2 3197 3271 -1 22 70 0 0 chr6 80888008 80888051 -108391503 + AT_rich Low_complexity Low_complexity 1 43 0 201 186 0 23 chr6 80888072 80888115 -108391439 + T-rich Low_complexity Low_complexity 2 43 0 22 0 0 0 chr6 80890480 80890502 -108389052 + AT_rich Low_complexity Low_complexity 1 22 0 1435 106 55 0 chr6 80890996 80891213 -108388341 - MER30 DNA MER1_type 0 230 2 990 225 173 48 chr6 80891990 80892430 -108387124 - L2 LINE L2 -1 3312 2818 504 240 0 32 chr6 80892461 80892586 -108386968 + MER5C DNA MER1_type 1 121 -203 248 250 73 0 chr6 80892625 80892693 -108386861 + MER5C DNA MER1_type 251 323 -1 5558 241 100 45 chr6 80892710 80894234 -108385320 - L2 LINE L2 -520 2794 1138 2216 98 27 0 chr6 80894234 80894529 -108385025 + AluSx SINE Alu 1 303 -9 5558 241 100 45 chr6 80894529 80894969 -108384585 - L2 LINE L2 -2176 1138 723 28 29 0 0 chr6 80895361 80895396 -108384158 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 80895620 80895648 -108383906 + AT_rich Low_complexity Low_complexity 1 28 0 338 279 27 0 chr6 80895692 80895803 -108383751 - L1M4 LINE L1 -1535 4611 4498 211 139 70 0 chr6 80896692 80896735 -108382819 + T-rich Low_complexity Low_complexity 4 49 0 432 340 5 5 chr6 80897787 80897978 -108381576 + MARNA DNA Mariner 288 478 -108 1608 171 45 7 chr6 80898053 80898345 -108381209 + AluJb SINE Alu 1 303 -9 622 185 0 55 chr6 80898455 80898601 -108380953 + L1MB3 LINE L1 6043 6180 -3 1994 130 0 11 chr6 80899823 80900134 -108379420 - AluSx SINE Alu 0 308 1 219 256 22 78 chr6 80901005 80901095 -108378459 - L2 LINE L2 -4 3268 3184 219 271 71 24 chr6 80901314 80901399 -108378155 + MIR SINE MIR 168 256 -6 1396 294 280 21 chr6 80901495 80901605 -108377949 - L2 LINE L2 0 3313 3233 225 0 0 0 chr6 80901605 80901630 -108377924 + (CA)n Simple_repeat Simple_repeat 2 26 0 1396 294 280 21 chr6 80901630 80903277 -108376277 - L2 LINE L2 -80 3233 1075 404 235 130 37 chr6 80904343 80904505 -108375049 - MIR SINE MIR -52 210 34 1086 193 33 5 chr6 80905181 80905393 -108374161 - MER20 DNA MER1_type -1 218 1 593 267 75 47 chr6 80905775 80906202 -108373352 - L1ME4a LINE L1 0 6121 5683 225 65 0 0 chr6 80906658 80906689 -108372865 + (TC)n Simple_repeat Simple_repeat 2 32 0 2365 63 0 7 chr6 80906824 80907128 -108372426 - AluSp SINE Alu 0 302 1 754 283 44 0 chr6 80907573 80907778 -108371776 - MIR SINE MIR -13 249 36 538 259 110 53 chr6 80908130 80908362 -108371192 - MIR SINE MIR 0 262 17 22 0 0 0 chr6 80908896 80908918 -108370636 + AT_rich Low_complexity Low_complexity 1 22 0 637 283 153 23 chr6 80910174 80910481 -108369073 - L3 LINE CR1 -42 1535 1189 896 199 126 95 chr6 80910580 80910906 -108368648 + MER58B DNA MER1_type 6 341 0 1017 305 75 40 chr6 80910912 80911469 -108368085 - L3 LINE CR1 -571 1006 430 288 341 38 8 chr6 80911587 80911719 -108367835 - L1MC3 LINE L1 -952 6833 6698 1448 87 5 0 chr6 80911845 80912029 -108367525 - AluSg/x SINE Alu -35 277 93 315 91 52 26 chr6 80912196 80912273 -108367281 + CT-rich Low_complexity Low_complexity 2 80 0 666 219 133 0 chr6 80912418 80912569 -108366985 - MER45A DNA AcHobo -7 171 1 197 193 0 18 chr6 80914712 80914769 -108364785 + (TA)n Simple_repeat Simple_repeat 2 57 0 243 0 0 0 chr6 80914897 80914924 -108364630 + (TA)n Simple_repeat Simple_repeat 2 28 0 1134 248 75 26 chr6 80914934 80915762 -108363792 - HAL1 LINE L1 -1547 960 8 2412 79 0 10 chr6 80916901 80917206 -108362348 + AluY SINE Alu 3 304 -7 21 36 0 0 chr6 80917803 80917831 -108361723 + AT_rich Low_complexity Low_complexity 1 28 0 2181 197 89 45 chr6 80918446 80918985 -108360569 - MLT1F1 LTR MaLR -4 563 1 21 0 0 0 chr6 80919750 80919771 -108359783 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr6 80922006 80922030 -108357524 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 259 294 42 17 chr6 80923199 80923318 -108356236 + MER20B DNA MER1_type 36 157 -626 2275 101 0 3 chr6 80923625 80923921 -108355633 - AluSq SINE Alu -18 295 1 2112 120 0 19 chr6 80926107 80926416 -108353138 + AluSx SINE Alu 1 303 -9 207 0 0 0 chr6 80927125 80927148 -108352406 + (T)n Simple_repeat Simple_repeat 1 23 0 25 31 0 0 chr6 80929104 80929136 -108350418 + AT_rich Low_complexity Low_complexity 1 32 0 1892 143 0 33 chr6 80933562 80933863 -108345691 - AluJo SINE Alu -21 291 1 26 50 0 0 chr6 80934693 80934733 -108344821 + AT_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr6 80935144 80935170 -108344384 + AT_rich Low_complexity Low_complexity 1 26 0 255 61 0 0 chr6 80935673 80935706 -108343848 + (CA)n Simple_repeat Simple_repeat 2 34 0 262 64 0 43 chr6 80936959 80937006 -108342548 + (ATG)n Simple_repeat Simple_repeat 2 46 0 1262 172 48 41 chr6 80937094 80937408 -108342146 + MER33 DNA MER1_type 1 316 -8 451 280 121 0 chr6 80937463 80937595 -108341959 + MIR SINE MIR 3 150 -112 2196 114 0 7 chr6 80937617 80937906 -108341648 + AluSx SINE Alu 1 287 -25 794 191 185 0 chr6 80939083 80939272 -108340282 + MER58A DNA MER1_type 1 224 0 809 214 86 14 chr6 80939403 80939613 -108339941 - Charlie8 DNA MER1_type -2153 264 40 276 30 0 0 chr6 80939898 80939931 -108339623 + (CAT)n Simple_repeat Simple_repeat 3 35 0 260 296 25 0 chr6 80939982 80940063 -108339491 - MIR SINE MIR -109 153 71 261 0 0 0 chr6 80940148 80940177 -108339377 + (TG)n Simple_repeat Simple_repeat 1 29 0 884 151 0 0 chr6 80940678 80940830 -108338724 + L1MA5A LINE L1 6145 6296 -1 189 259 0 69 chr6 80941963 80942021 -108337533 - L2 LINE L2 -9 3263 3210 * 420 205 86 26 chr6 80941988 80942105 -108337449 - MIR SINE MIR -24 238 115 962 273 8 5 chr6 80943026 80943283 -108336271 - MIR SINE MIR -3 259 1 22 0 0 0 chr6 80944653 80944675 -108334879 + AT_rich Low_complexity Low_complexity 1 22 0 549 285 115 13 chr6 80945913 80946424 -108333130 + L1MC4a LINE L1 3838 4432 -1714 398 300 135 28 chr6 80946599 80946999 -108332555 + L1MC4a LINE L1 4638 5080 -1066 1844 243 103 55 chr6 80947019 80947850 -108331704 + L1MC4a LINE L1 5268 6138 -1670 911 158 89 0 chr6 80950457 80950615 -108328939 + MER5B DNA MER1_type 1 172 -6 652 209 57 0 chr6 80950801 80950959 -108328595 - MER5A DNA MER1_type -21 168 2 27 0 0 0 chr6 80951998 80952025 -108327529 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr6 80953994 80954017 -108325537 + (TG)n Simple_repeat Simple_repeat 1 23 0 2024 134 0 3 chr6 80954930 80955238 -108324316 + AluSg SINE Alu 1 307 0 2282 94 7 0 chr6 80955591 80955899 -108323655 + AluY SINE Alu 1 310 -1 2364 93 0 3 chr6 80956578 80956880 -108322674 - AluSp SINE Alu -12 301 1 299 295 129 62 chr6 80957776 80957969 -108321585 - L2 LINE L2 -465 2849 2644 2327 101 0 0 chr6 80958614 80958910 -108320644 + AluSx SINE Alu 1 296 -16 386 336 58 0 chr6 80959193 80959330 -108320224 + MIR3 SINE MIR 50 194 -14 2342 85 0 0 chr6 80963292 80963585 -108315969 - AluSx SINE Alu -19 293 1 730 42 104 0 chr6 80965096 80965192 -108314362 - MER85 DNA T2_type -33 106 1 2135 112 3 0 chr6 80965430 80965724 -108313830 + AluSq SINE Alu 1 295 -18 1877 148 30 7 chr6 80965842 80966146 -108313408 + AluSx SINE Alu 1 311 -1 257 261 31 31 chr6 80966304 80966369 -108313185 - MER5A DNA MER1_type -60 129 65 917 251 39 0 chr6 80966563 80966794 -108312760 + MIR SINE MIR 19 258 -4 213 232 11 63 chr6 80968481 80968576 -108310978 - L2 LINE L2 0 3313 3224 409 257 62 28 chr6 80969025 80969169 -108310385 + MER20B DNA MER1_type 30 178 -605 281 272 134 62 chr6 80969194 80969418 -108310136 - L2 LINE L2 -653 2661 2422 1920 166 0 0 chr6 80969736 80970031 -108309523 + AluJb SINE Alu 1 295 -17 2614 157 35 108 chr6 80970677 80971020 -108308534 + L1MB8 LINE L1 5574 5850 -328 1743 171 0 14 chr6 80971020 80971312 -108308242 + AluJo SINE Alu 1 288 -24 2614 157 35 108 chr6 80971312 80971604 -108307950 + L1MB8 LINE L1 5850 6162 -16 24 77 0 0 chr6 80973089 80973141 -108306413 + AT_rich Low_complexity Low_complexity 1 52 0 30 27 0 0 chr6 80976377 80976414 -108303140 + AT_rich Low_complexity Low_complexity 1 37 0 2348 90 0 10 chr6 80976806 80977116 -108302438 - AluSc SINE Alu -2 307 1 1414 155 13 0 chr6 80977270 80977509 -108302045 + AluSx SINE Alu 46 287 -25 22 0 0 0 chr6 80979886 80979908 -108299646 + AT_rich Low_complexity Low_complexity 1 22 0 2400 68 0 19 chr6 80980017 80980324 -108299230 + AluSq SINE Alu 1 301 -12 195 283 67 0 chr6 80981064 80981124 -108298430 + MIR3 SINE MIR 138 201 -7 340 247 104 65 chr6 80981455 80981609 -108297945 - MARNA DNA Mariner -341 245 86 24 32 0 0 chr6 80981869 80981900 -108297654 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 80982974 80982995 -108296559 + AT_rich Low_complexity Low_complexity 1 21 0 315 263 102 29 chr6 80983190 80983327 -108296227 - L1ME4a LINE L1 -12 6109 5963 219 283 0 0 chr6 80983328 80983388 -108296166 + GA-rich Low_complexity Low_complexity 2 61 0 385 305 43 39 chr6 80983833 80984112 -108295442 - L1M4 LINE L1 -1332 4814 4535 249 281 61 12 chr6 80985256 80985338 -108294216 + L2 LINE L2 3219 3304 -9 2401 80 3 0 chr6 80987077 80987379 -108292175 - AluSp SINE Alu -10 303 1 1865 167 3 3 chr6 80987979 80988272 -108291282 - AluJo SINE Alu -19 293 1 23 33 0 0 chr6 80989509 80989539 -108290015 + AT_rich Low_complexity Low_complexity 1 30 0 283 315 11 22 chr6 80992515 80992607 -108286947 + L2 LINE L2 3173 3263 -9 273 77 211 0 chr6 80993647 80993733 -108285821 + L1PA4 LINE L1 6080 6176 0 2964 63 0 20 chr6 80993947 80994341 -108285213 - L1PA11 LINE L1 0 6174 5789 258 319 0 53 chr6 80996563 80996657 -108282897 + MIR SINE MIR 52 140 -122 215 173 58 19 chr6 80998324 80998376 -108281178 + CT-rich Low_complexity Low_complexity 2 55 0 33 66 0 0 chr6 80998799 80998860 -108280694 + AT_rich Low_complexity Low_complexity 1 61 0 1688 47 0 33 chr6 80999216 80999428 -108280126 + AluSq SINE Alu 101 305 -8 210 71 0 0 chr6 81000463 81000491 -108279063 + (TC)n Simple_repeat Simple_repeat 1 28 0 235 216 80 45 chr6 81003902 81003990 -108275564 - MIR SINE MIR -81 127 37 26 0 0 0 chr6 81004207 81004233 -108275321 + AT_rich Low_complexity Low_complexity 1 26 0 237 114 0 0 chr6 81005301 81005336 -108274218 + HY3 scRNA scRNA 1 35 -66 2277 110 0 3 chr6 81005635 81005945 -108273609 - AluSc SINE Alu 0 309 1 21 57 0 0 chr6 81007060 81007095 -108272459 + AT_rich Low_complexity Low_complexity 1 35 0 3628 253 117 27 chr6 81007283 81008760 -108270794 + L2 LINE L2 1699 3313 0 432 235 59 0 chr6 81008834 81008936 -108270618 + MIR3 SINE MIR 95 202 -6 200 376 56 0 chr6 81011031 81011156 -108268398 + L2 LINE L2 2927 3058 -214 304 269 27 67 chr6 81011630 81011779 -108267775 + MIR SINE MIR 96 238 -24 183 80 0 0 chr6 81012946 81012971 -108266583 + (GA)n Simple_repeat Simple_repeat 1 25 0 396 0 0 0 chr6 81013389 81013433 -108266121 + (CA)n Simple_repeat Simple_repeat 1 44 0 2220 110 13 3 chr6 81015036 81015345 -108264209 - AluSq SINE Alu -1 312 1 31 44 0 0 chr6 81016517 81016562 -108262992 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr6 81016583 81016605 -108262949 + AT_rich Low_complexity Low_complexity 1 22 0 352 316 82 0 chr6 81017967 81018125 -108261429 - MIR SINE MIR -2 260 90 216 261 29 29 chr6 81018172 81018241 -108261313 + CT-rich Low_complexity Low_complexity 3 71 0 422 311 53 21 chr6 81018646 81018836 -108260718 + MIR SINE MIR 2 197 -65 267 0 70 0 chr6 81020194 81020237 -108259317 + (TAA)n Simple_repeat Simple_repeat 3 48 0 26 30 0 0 chr6 81020292 81020325 -108259229 + AT_rich Low_complexity Low_complexity 1 33 0 2254 122 0 3 chr6 81021051 81021362 -108258192 + AluSx SINE Alu 1 310 -2 244 258 32 0 chr6 81021461 81021523 -108258031 - L2 LINE L2 0 3272 3209 2425 94 0 0 chr6 81021958 81022265 -108257289 - AluSg SINE Alu -3 307 1 257 311 8 15 chr6 81022424 81022556 -108256998 + CT-rich Low_complexity Low_complexity 1 131 0 487 304 26 31 chr6 81023198 81023389 -108256165 + MIR SINE MIR 28 217 -45 394 315 30 18 chr6 81023423 81023588 -108255966 - MIR SINE MIR -21 241 75 970 156 0 81 chr6 81024021 81024207 -108255347 - AluJo SINE Alu -19 293 123 2389 83 3 13 chr6 81025038 81025350 -108254204 + AluSx SINE Alu 1 309 -3 1913 160 0 6 chr6 81025359 81025672 -108253882 + AluJb SINE Alu 1 311 -1 307 337 122 50 chr6 81026198 81026560 -108252994 - L2 LINE L2 -1 3271 2884 * 450 310 67 53 chr6 81026556 81026898 -108252656 - L2 LINE L2 0 3313 2967 650 173 0 18 chr6 81027679 81027789 -108251765 + FLAM_A SINE Alu 20 127 -15 21 71 0 0 chr6 81028030 81028072 -108251482 + AT_rich Low_complexity Low_complexity 1 42 0 243 302 86 9 chr6 81028299 81028415 -108251139 + MER112 DNA MER1_type 129 253 -7 567 228 20 19 chr6 81029418 81029554 -108250000 - MER5A DNA MER1_type -42 147 1 25 0 0 0 chr6 81029645 81029670 -108249884 + AT_rich Low_complexity Low_complexity 1 25 0 800 240 143 5 chr6 81030360 81030577 -108248977 + MIR SINE MIR 16 262 0 238 247 0 32 chr6 81031184 81031277 -108248277 - L1MC4 LINE L1 -1339 6703 6614 1353 113 35 4 chr6 81031352 81031583 -108247971 + L1MA3 LINE L1 6066 6303 -2 497 204 84 7 chr6 81031585 81031727 -108247827 - L1ME4a LINE L1 -12 6109 5957 25 0 0 0 chr6 81032481 81032506 -108247048 + AT_rich Low_complexity Low_complexity 1 25 0 309 339 63 8 chr6 81032517 81032644 -108246910 - MIR SINE MIR -109 153 20 228 182 0 0 chr6 81032671 81032715 -108246839 + (CA)n Simple_repeat Simple_repeat 1 44 0 286 360 37 7 chr6 81033421 81033557 -108245997 - L2 LINE L2 -228 3044 2905 195 322 98 24 chr6 81035262 81035440 -108244114 + MIR3 SINE MIR 3 211 -51 284 309 73 42 chr6 81035487 81035652 -108243902 - L2 LINE L2 -16 3297 3128 363 315 77 0 chr6 81036251 81036394 -108243160 - MIR SINE MIR 0 262 109 288 0 0 0 chr6 81036571 81036603 -108242951 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2091 120 0 0 chr6 81036608 81036884 -108242670 - AluSx SINE Alu -36 276 1 405 0 0 0 chr6 81037076 81037121 -108242433 + (TG)n Simple_repeat Simple_repeat 2 46 0 42538 37 1 1 chr6 81037321 81043477 -108236077 + L1PA4 LINE L1 1 6152 -3 2098 143 0 9 chr6 81044340 81044655 -108234899 + AluSx SINE Alu 1 312 0 576 215 12 99 chr6 81044666 81044838 -108234716 - MER5B DNA MER1_type -21 157 1 538 185 25 84 chr6 81045836 81045955 -108233599 - MER81 DNA DNA -2 112 1 517 319 31 12 chr6 81046127 81046287 -108233267 - MIR SINE MIR -78 184 22 26 50 0 0 chr6 81046626 81046666 -108232888 + AT_rich Low_complexity Low_complexity 1 40 0 1871 137 12 56 chr6 81049354 81049557 -108229997 - AluSx SINE Alu -5 307 97 2561 55 0 0 chr6 81049557 81049867 -108229687 + AluY SINE Alu 2 311 0 828 148 9 0 chr6 81049868 81049983 -108229571 - AluSq/x SINE Alu -196 117 2 1042 231 45 16 chr6 81050084 81050331 -108229223 - LTR40b LTR ERVL 0 462 209 32214 110 11 56 chr6 81050347 81050376 -108229178 - L1PA7 LINE L1 0 6172 6143 219 95 24 0 chr6 81050376 81050418 -108229136 + (TTTTA)n Simple_repeat Simple_repeat 1 180 0 32214 110 11 56 chr6 81050418 81056839 -108222715 - L1PA7 LINE L1 -29 6143 12 1108 235 29 4 chr6 81056850 81057093 -108222461 - LTR40a LTR ERVL -270 249 1 22 0 0 0 chr6 81057823 81057845 -108221709 + AT_rich Low_complexity Low_complexity 1 22 0 2280 166 3 8 chr6 81057881 81058249 -108221305 - MER47A DNA MER2_type 0 366 1 5923 134 2 21 chr6 81058366 81059851 -108219703 - L1PA15 LINE L1 0 7603 6133 2102 125 0 0 chr6 81059851 81060158 -108219396 + AluSg SINE Alu 1 307 0 5923 134 2 21 chr6 81060158 81060324 -108219230 - L1PA15 LINE L1 -1470 6133 5965 2383 136 19 21 chr6 81060324 81060700 -108218854 - THE1C LTR MaLR 0 375 1 10213 117 45 6 chr6 81060700 81062221 -108217333 - THE1C-int LTR MaLR 0 1580 1 2523 135 5 16 chr6 81062221 81062600 -108216954 - THE1C LTR MaLR 0 375 1 15058 225 24 18 chr6 81062600 81067501 -108212053 - L1PA15 LINE L1 -1615 5969 1037 244 269 0 0 chr6 81067505 81067557 -108211997 + LTR30 LTR ERV1 1 52 -670 1007 150 70 8 chr6 81067557 81067757 -108211797 + LTR12 LTR ERV1 100 288 -426 362 209 12 0 chr6 81067757 81067843 -108211711 + LTR30 LTR ERV1 556 642 -80 677 106 0 39 chr6 81067846 81067950 -108211604 + LTR12 LTR ERV1 615 714 0 1475 308 5 0 chr6 81067954 81068376 -108211178 - L1PA12 LINE L1 -6008 1573 1150 2134 111 0 10 chr6 81068649 81068947 -108210607 + AluSx SINE Alu 2 296 -16 2103 112 7 0 chr6 81068978 81069280 -108210274 + AluSg SINE Alu 1 304 0 2283 102 7 0 chr6 81069295 81069598 -108209956 + AluSq SINE Alu 3 307 -6 1000 201 45 5 chr6 81069829 81070028 -108209526 + MER3 DNA MER1_type 1 207 -2 367 261 167 28 chr6 81070192 81070372 -108209182 + MIR SINE MIR 58 262 0 2408 75 0 7 chr6 81070731 81071038 -108208516 + AluSc SINE Alu 2 306 -3 242 250 0 19 chr6 81072684 81072736 -108206818 - MER3 DNA MER1_type -158 51 1 1658 145 86 21 chr6 81073074 81073364 -108206190 + AluJo SINE Alu 1 309 -3 408 88 0 0 chr6 81073364 81073421 -108206133 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 366 107 0 0 chr6 81073459 81073515 -108206039 + (CA)n Simple_repeat Simple_repeat 1 56 0 586 165 22 0 chr6 81074516 81074607 -108204947 + MLT1D LTR MaLR 1 93 -412 186 103 0 0 chr6 81074615 81074644 -108204910 + (A)n Simple_repeat Simple_repeat 1 29 0 762 217 29 11 chr6 81074648 81074823 -108204731 + MLT1A1-int LTR MaLR 1 178 -1193 1604 252 45 118 chr6 81075079 81075330 -108204224 + MLT1A1-int LTR MaLR 650 918 -453 2025 172 40 8 chr6 81075330 81075684 -108203870 + MLT1A1 LTR MaLR 1 365 0 1604 252 45 118 chr6 81075684 81076211 -108203343 + MLT1A1-int LTR MaLR 918 1371 0 386 186 41 138 chr6 81076211 81076356 -108203198 + MLT1D LTR MaLR 1 131 -374 1712 119 4 28 chr6 81076358 81076610 -108202944 + AluSq SINE Alu 1 246 -67 255 191 0 0 chr6 81076610 81076652 -108202902 - AluSp/q SINE Alu -26 277 236 601 229 38 0 chr6 81076663 81076794 -108202760 + MLT1E2 LTR MaLR 491 626 0 384 305 26 52 chr6 81077125 81077279 -108202275 + MIR3 SINE MIR 5 154 -54 419 289 141 0 chr6 81077534 81077655 -108201899 + MIR SINE MIR 5 142 -120 1550 206 51 26 chr6 81077747 81078110 -108201444 + MLT1A2 LTR MaLR 1 624 -2 13050 45 1 0 chr6 81078416 81079986 -108199568 - L1PA5 LINE L1 -1024 5122 3551 7840 45 2 0 chr6 81079986 81081033 -108198521 + L1PA5 LINE L1 5106 6154 0 25 0 0 0 chr6 81081191 81081216 -108198338 + AT_rich Low_complexity Low_complexity 1 25 0 185 224 0 69 chr6 81081534 81081592 -108197962 - L2 LINE L2 -98 3215 3162 440 187 27 0 chr6 81132260 81132335 -108147219 - Tigger5 DNA MER2_type 0 2323 2247 * 1551 233 7 3 chr6 81132333 81132633 -108146921 - Tigger5 DNA MER2_type -2022 301 1 451 116 0 0 chr6 81132878 81132947 -108146607 - L1PA16 LINE L1 -3 6163 6095 742 225 77 0 chr6 81133341 81133510 -108146044 - MLT2B1 LTR ERVL -338 182 1 2124 85 51 0 chr6 81133625 81133918 -108145636 - AluSc SINE Alu -1 308 1 2430 138 42 42 chr6 81134074 81134500 -108145054 + MSTC LTR MaLR 1 426 -2 5832 210 40 102 chr6 81134500 81135976 -108143578 + MSTC-int LTR MaLR 1 1353 -298 1921 136 3 32 chr6 81135976 81136286 -108143268 - AluSx SINE Alu -11 301 1 5832 210 40 102 chr6 81136286 81136566 -108142988 + MSTC-int LTR MaLR 1353 1649 -2 1482 171 108 77 chr6 81136574 81136922 -108142632 + MSTC LTR MaLR 1 366 -62 2151 124 3 0 chr6 81136922 81137220 -108142334 + AluSq SINE Alu 1 299 -14 1482 171 108 77 chr6 81137220 81137286 -108142268 + MSTC LTR MaLR 366 428 0 1319 95 15 2 chr6 81137892 81138156 -108141398 + AluSx SINE Alu 2 312 0 1265 252 193 5 chr6 81138449 81138838 -108140716 + LTR16B LTR ERVL 1 462 -2 192 300 67 0 chr6 81139353 81139413 -108140141 - L2 LINE L2 0 3313 3250 1985 129 3 50 chr6 81139421 81139739 -108139815 - AluSx SINE Alu -9 303 1 24 32 0 0 chr6 81140013 81140044 -108139510 + AT_rich Low_complexity Low_complexity 1 31 0 1953 154 3 6 chr6 81140386 81140698 -108138856 + AluSx SINE Alu 1 311 -1 1567 175 71 56 chr6 81140937 81141348 -108138206 - Charlie1 DNA MER1_type -2 2759 2343 2428 90 3 0 chr6 81141960 81142261 -108137293 + AluSg SINE Alu 1 302 -8 3255 168 16 0 chr6 81143339 81143846 -108135708 + MLT2B2 LTR ERVL 1 515 0 1626 235 59 39 chr6 81144193 81144687 -108134867 + MLT1E LTR MaLR 90 593 0 216 0 0 0 chr6 81145095 81145119 -108134435 + (TATAA)n Simple_repeat Simple_repeat 5 28 0 2345 96 0 3 chr6 81145367 81145669 -108133885 - AluSx SINE Alu -11 301 1 1118 115 138 0 chr6 81145932 81146106 -108133448 + MSTA LTR MaLR 1 198 -230 12455 164 103 13 chr6 81146122 81147222 -108132332 + L1PBa LINE L1 6 1005 -5857 2010 107 72 3 chr6 81147222 81147513 -108132041 + AluSq SINE Alu 1 311 -2 12455 164 103 13 chr6 81147513 81150041 -108129513 + L1PBa LINE L1 1005 3964 -2898 31 0 0 0 chr6 81150380 81150411 -108129143 + AT_rich Low_complexity Low_complexity 1 31 0 10131 204 8 9 chr6 81151718 81153216 -108126338 + L1 LINE L1 3950 5448 -1414 1949 96 10 41 chr6 81153216 81153624 -108125930 - AluSq SINE Alu 0 399 1 10131 204 8 9 chr6 81153624 81154296 -108125258 + L1 LINE L1 5448 6119 -743 21 0 0 0 chr6 81154410 81154431 -108125123 + AT_rich Low_complexity Low_complexity 1 21 0 293 202 29 58 chr6 81155023 81155127 -108124427 - L1MC5 LINE L1 -30 7931 7831 1967 120 46 3 chr6 81155228 81155384 -108124170 - AluSx SINE Alu -17 295 120 369 0 0 0 chr6 81155384 81155425 -108124129 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 1967 120 46 3 chr6 81155425 81155551 -108124003 - AluSx SINE Alu -192 120 1 2089 94 45 7 chr6 81155982 81156270 -108123284 - AluSx SINE Alu -13 299 1 1772 150 20 7 chr6 81156435 81156729 -108122825 - AluSx SINE Alu -4 308 11 180 0 0 0 chr6 81157166 81157186 -108122368 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1111 208 63 57 chr6 81157549 81157962 -108121592 - MLT1C LTR MaLR 0 467 6 2200 110 10 3 chr6 81158117 81158407 -108121147 - AluSx SINE Alu -16 296 5 2034 130 3 13 chr6 81158595 81158910 -108120644 + AluSx SINE Alu 1 312 0 2185 152 40 32 chr6 81159018 81159564 -108119990 + MLT2A2 LTR ERVL 1 554 0 2055 120 11 0 chr6 81160560 81160870 -108118684 + AluSx SINE Alu 1 313 0 11449 120 58 17 chr6 81160872 81161103 -108118451 + Tigger1 DNA MER2_type 521 741 -1677 2090 115 28 0 chr6 81161103 81161389 -108118165 - AluSx SINE Alu -12 300 7 11449 120 58 17 chr6 81161389 81162511 -108117043 + Tigger1 DNA MER2_type 741 1971 -447 1792 100 16 4 chr6 81162511 81162762 -108116792 - AluSq SINE Alu -15 298 45 11449 120 58 17 chr6 81162762 81163230 -108116324 + Tigger1 DNA MER2_type 1971 2418 0 914 119 160 114 chr6 81163242 81163461 -108116093 - MER93b LTR ERV1 -143 230 2 1448 111 56 173 chr6 81163597 81163773 -108115781 - AluSx SINE Alu 0 302 184 399 68 0 0 chr6 81163773 81163832 -108115722 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1448 111 56 173 chr6 81163832 81163996 -108115558 - AluSx SINE Alu -118 184 2 744 147 172 55 chr6 81164511 81164715 -108114839 + MLT2B2 LTR ERVL 319 515 0 3707 123 8 25 chr6 81164845 81165208 -108114346 + MER41E LTR ERV1 1 354 -158 2232 109 0 0 chr6 81165208 81165502 -108114052 - AluSx SINE Alu 0 312 19 3707 123 8 25 chr6 81165502 81165659 -108113895 + MER41E LTR ERV1 354 512 0 600 241 0 0 chr6 81165663 81165779 -108113775 - MIR SINE MIR -108 154 39 25 0 0 0 chr6 81165905 81165930 -108113624 + AT_rich Low_complexity Low_complexity 1 25 0 2128 125 0 3 chr6 81166010 81166306 -108113248 + AluSx SINE Alu 1 295 -17 1708 81 5 0 chr6 81166366 81166577 -108112977 - AluSp SINE Alu -21 292 81 2218 109 3 0 chr6 81166935 81167237 -108112317 - AluSx SINE Alu -9 303 1 508 273 62 6 chr6 81167398 81167559 -108111995 + MIR SINE MIR 88 257 -5 832 299 23 0 chr6 81167686 81167907 -108111647 - MIR SINE MIR -35 227 2 2056 129 3 16 chr6 81167959 81168268 -108111286 - AluSx SINE Alu -7 305 1 270 0 0 0 chr6 81168277 81168307 -108111247 + (TG)n Simple_repeat Simple_repeat 1 30 0 2193 92 0 7 chr6 81168307 81168589 -108110965 - AluSq SINE Alu -33 280 1 388 269 110 36 chr6 81168633 81168852 -108110702 + L2 LINE L2 3078 3312 -1 298 233 80 80 chr6 81168895 81169045 -108110509 - L2 LINE L2 -5 3308 3159 846 170 14 7 chr6 81169444 81169591 -108109963 - LTR48B LTR ERV1 0 644 497 1058 207 32 32 chr6 81169874 81170120 -108109434 - MLT1A2 LTR MaLR 0 374 129 479 264 62 0 chr6 81170134 81170263 -108109291 - L1ME1 LINE L1 -5 6161 6025 702 151 67 0 chr6 81170264 81170383 -108109171 - MLT1A2 LTR MaLR -247 127 1 1097 215 84 28 chr6 81170940 81171161 -108108393 + L1ME1 LINE L1 5862 6105 -61 2027 88 33 0 chr6 81171161 81171463 -108108091 + AluSg SINE Alu 1 311 0 1097 215 84 28 chr6 81171463 81171524 -108108030 + L1ME1 LINE L1 6105 6161 -5 1489 85 47 68 chr6 81171659 81171894 -108107660 - MER30 DNA MER1_type 0 230 1 2315 101 0 0 chr6 81172063 81172359 -108107195 + AluSx SINE Alu 1 296 -16 747 334 43 81 chr6 81172624 81173111 -108106443 - L2 LINE L2 -639 2675 2171 1664 134 40 14 chr6 81173111 81173388 -108106166 + AluJo SINE Alu 1 284 -28 747 334 43 81 chr6 81173388 81173568 -108105986 - L2 LINE L2 -1143 2171 2040 1646 183 3 14 chr6 81173568 81173871 -108105683 + AluJb SINE Alu 2 308 0 201 74 0 0 chr6 81173871 81173898 -108105656 + (CA)n Simple_repeat Simple_repeat 2 28 0 747 334 43 81 chr6 81173902 81174024 -108105530 - L2 LINE L2 -1274 2040 1915 4959 140 33 32 chr6 81174158 81174247 -108105307 - L1MB4 LINE L1 0 6180 6093 2066 123 10 3 chr6 81174247 81174549 -108105005 + AluSx SINE Alu 2 305 -7 4959 140 33 32 chr6 81174549 81175365 -108104189 - L1MB4 LINE L1 -87 6093 5274 22 0 0 0 chr6 81176114 81176136 -108103418 + AT_rich Low_complexity Low_complexity 1 22 0 743 219 0 0 chr6 81176492 81176615 -108102939 + FLAM_A SINE Alu 1 123 -10 6174 109 12 20 chr6 81176624 81176856 -108102698 + L1PA16 LINE L1 4884 5116 -1050 189 0 0 0 chr6 81176856 81176877 -108102677 + (CAA)n Simple_repeat Simple_repeat 1 21 0 6174 109 12 20 chr6 81176877 81177907 -108101647 + L1PA16 LINE L1 5116 6153 -13 330 289 139 40 chr6 81178100 81178143 -108101411 + MIR SINE MIR 32 69 -193 1891 182 136 29 chr6 81178143 81178599 -108100955 + MLT1D LTR MaLR 1 505 0 330 289 139 40 chr6 81178599 81178728 -108100826 + MIR SINE MIR 69 221 -41 185 108 27 0 chr6 81179747 81179784 -108099770 + (CA)n Simple_repeat Simple_repeat 1 38 0 300 254 66 16 chr6 81179791 81179913 -108099641 + L1ME LINE L1 4 131 -5988 498 114 0 14 chr6 81180016 81180086 -108099468 - AluSc SINE Alu -160 149 81 1967 150 0 0 chr6 81180087 81180373 -108099181 - AluSx SINE Alu -20 292 7 1804 156 31 3 chr6 81180531 81180820 -108098734 - AluJo SINE Alu -15 297 1 2032 144 3 3 chr6 81180883 81181242 -108098312 + AluSx SINE Alu 1 359 0 270 277 9 18 chr6 81181277 81181295 -108098259 + L1ME LINE L1 946 963 -5156 2311 111 0 0 chr6 81181295 81181602 -108097952 + AluSx SINE Alu 1 307 -5 270 277 9 18 chr6 81181602 81181695 -108097859 + L1ME LINE L1 963 1056 -5063 796 211 5 63 chr6 81181700 81181890 -108097664 + AluJo SINE Alu 121 299 -13 1249 102 76 22 chr6 81182305 81182530 -108097024 - L1MA8 LINE L1 -4 6287 6051 672 274 129 80 chr6 81182530 81182586 -108096968 + L1ME LINE L1 3157 3209 -2920 1745 81 18 0 chr6 81182586 81182807 -108096747 + AluSg/x SINE Alu 85 309 -3 672 274 129 80 chr6 81182807 81183253 -108096301 + L1ME LINE L1 3209 3632 -2497 1746 102 0 0 chr6 81183253 81183478 -108096076 + AluSg SINE Alu 1 225 -85 672 274 129 80 chr6 81183478 81184270 -108095284 + L1ME LINE L1 3632 4384 -1745 1734 122 80 0 chr6 81184270 81184533 -108095021 + AluSg SINE Alu 5 288 -22 672 274 129 80 chr6 81184533 81185151 -108094403 + L1ME LINE L1 4384 5164 -965 1859 119 93 4 chr6 81185322 81185600 -108093954 + AluSq SINE Alu 1 303 -10 2683 32 3 0 chr6 81185602 81185911 -108093643 + AluY SINE Alu 1 310 -1 518 244 81 51 chr6 81185913 81186192 -108093362 + L1ME LINE L1 5320 5622 -531 2451 50 0 0 chr6 81186882 81187199 -108092355 + AluY SINE Alu 1 317 0 411 343 117 19 chr6 81188546 81188700 -108090854 + ERVL LTR ERVL 3284 3422 -2232 2087 108 47 0 chr6 81188700 81188996 -108090558 + AluSx SINE Alu 1 310 -2 411 343 117 19 chr6 81188996 81189281 -108090273 + ERVL LTR ERVL 3422 3770 -1884 1140 153 0 0 chr6 81189305 81189468 -108090086 - AluSx SINE Alu -149 163 1 333 0 0 0 chr6 81189661 81189698 -108089856 + (A)n Simple_repeat Simple_repeat 1 37 0 1571 243 104 32 chr6 81189737 81190206 -108089348 - MLT1F1 LTR MaLR -2 565 63 809 288 86 45 chr6 81190223 81190948 -108088606 + ERVL LTR ERVL 4048 4865 -873 949 225 80 12 chr6 81191121 81191424 -108088130 + LTR40b LTR ERVL 148 459 -3 277 283 61 10 chr6 81191480 81191579 -108087975 + ERVL LTR ERVL 4928 5031 -623 25 0 0 0 chr6 81191648 81191673 -108087881 + AT_rich Low_complexity Low_complexity 1 25 0 236 337 40 20 chr6 81191914 81192015 -108087539 - MER5B DNA MER1_type -47 131 29 1603 137 82 4 chr6 81192124 81192380 -108087174 - AluJo SINE Alu -36 276 1 558 254 8 8 chr6 81192956 81193086 -108086468 + LTR67 LTR ERVL 428 557 0 24 67 0 0 chr6 81193568 81193613 -108085941 + AT_rich Low_complexity Low_complexity 1 45 0 28 105 0 0 chr6 81194030 81194135 -108085419 + AT_rich Low_complexity Low_complexity 1 105 0 2364 95 0 0 chr6 81195419 81195723 -108083831 - AluSq SINE Alu -9 304 1 1779 157 6 35 chr6 81196038 81196350 -108083204 - AluJb SINE Alu -5 307 5 188 263 105 70 chr6 81196824 81196938 -108082616 - L3 LINE CR1 -7 1570 1453 239 320 68 39 chr6 81196983 81197086 -108082468 - L2 LINE L2 -26 3246 3141 272 230 230 32 chr6 81197150 81197163 -108082391 + MIR3 SINE MIR 34 43 -165 2406 95 0 0 chr6 81197163 81197468 -108082086 - AluSq SINE Alu -6 307 3 272 230 230 32 chr6 81197468 81197580 -108081974 + MIR3 SINE MIR 43 184 -24 2088 129 19 13 chr6 81198600 81198910 -108080644 - AluSx SINE Alu 0 312 1 27 49 0 0 chr6 81199100 81199141 -108080413 + AT_rich Low_complexity Low_complexity 1 41 0 479 249 245 72 chr6 81199251 81199329 -108080225 + Charlie2 DNA MER1_type 22 85 -2697 1645 180 44 0 chr6 81199329 81199624 -108079930 + AluJo SINE Alu 1 308 -4 479 249 245 72 chr6 81199624 81199782 -108079772 + Charlie2 DNA MER1_type 85 299 -2483 * 772 178 22 0 chr6 81199780 81199915 -108079639 + Charlie2a DNA MER1_type 1495 1632 -1230 2187 104 17 0 chr6 81199958 81200256 -108079298 + AluSx SINE Alu 1 303 -9 724 259 47 21 chr6 81200285 81200521 -108079033 + L2 LINE L2 1715 1956 -1358 23 68 0 0 chr6 81201105 81201149 -108078405 + AT_rich Low_complexity Low_complexity 1 44 0 2288 112 0 3 chr6 81202114 81202419 -108077135 + AluSg SINE Alu 1 304 -6 13968 130 51 10 chr6 81202799 81203261 -108076293 + Tigger1 DNA MER2_type 1 443 -1975 1484 201 10 7 chr6 81203261 81203554 -108076000 - AluJo SINE Alu -18 294 1 13968 130 51 10 chr6 81203554 81205414 -108074140 + Tigger1 DNA MER2_type 443 2418 0 404 293 156 45 chr6 81205484 81205907 -108073647 - L1MC4a LINE L1 -1898 5910 5441 37 0 0 0 chr6 81205931 81205968 -108073586 + AT_rich Low_complexity Low_complexity 1 37 0 182 234 31 47 chr6 81206379 81206443 -108073111 + MIR3 SINE MIR 136 198 -10 1054 210 13 36 chr6 81207259 81207483 -108072071 + MER20 DNA MER1_type 1 219 0 622 262 122 0 chr6 81209030 81209194 -108070360 + MIR SINE MIR 79 262 0 2107 118 0 10 chr6 81209255 81209551 -108070003 - AluSx SINE Alu -19 293 1 2288 107 0 0 chr6 81209802 81210112 -108069442 - AluSq SINE Alu -2 311 2 1545 177 6 60 chr6 81210122 81210342 -108069212 - AluJb SINE Alu -12 300 101 2163 85 39 0 chr6 81210342 81210623 -108068931 - AluSp SINE Alu -19 294 3 1545 177 6 60 chr6 81210623 81210719 -108068835 - AluJb SINE Alu -211 101 1 344 284 165 31 chr6 81210771 81210965 -108068589 - MIR SINE MIR -26 236 17 22 80 0 0 chr6 81211714 81211764 -108067790 + AT_rich Low_complexity Low_complexity 1 50 0 330 314 165 33 chr6 81211980 81212222 -108067332 - L2 LINE L2 -823 2491 2218 720 142 9 9 chr6 81212223 81212336 -108067218 + FRAM SINE Alu 40 152 -24 261 0 0 0 chr6 81212604 81212633 -108066921 + (TG)n Simple_repeat Simple_repeat 1 29 0 561 343 168 37 chr6 81212827 81213768 -108065786 - L2 LINE L2 -638 2676 1613 2581 42 0 3 chr6 81214257 81214563 -108064991 + AluY SINE Alu 1 305 -6 2428 48 0 3 chr6 81214874 81215168 -108064386 - AluY SINE Alu -18 293 1 245 359 107 19 chr6 81215191 81215350 -108064204 - L2 LINE L2 -2706 608 436 823 249 37 14 chr6 81215379 81215596 -108063958 + MER58A DNA MER1_type 1 222 -2 579 29 0 0 chr6 81216020 81216089 -108063465 + (TATAA)n Simple_repeat Simple_repeat 5 73 0 23 0 0 0 chr6 81216650 81216673 -108062881 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr6 81217081 81217109 -108062445 + AT_rich Low_complexity Low_complexity 1 28 0 2401 84 0 0 chr6 81217648 81217947 -108061607 + AluSc SINE Alu 1 299 -10 1756 162 56 6 chr6 81219212 81219533 -108060021 - MER1B DNA MER1_type 0 337 1 1975 130 30 3 chr6 81220270 81220569 -108058985 + AluJb SINE Alu 1 307 -5 244 0 0 53 chr6 81220601 81220639 -108058915 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 870 235 21 4 chr6 81220639 81220873 -108058681 - L1MB8 LINE L1 -22 6156 5919 2250 110 0 0 chr6 81221923 81222231 -108057323 - AluY SINE Alu -3 308 1 8173 120 21 12 chr6 81222547 81222706 -108056848 + HSMAR2 DNA Mariner 1 157 -1145 2130 86 65 0 chr6 81222706 81222997 -108056557 + AluY SINE Alu 1 310 -1 8173 120 21 12 chr6 81222997 81224108 -108055446 + HSMAR2 DNA Mariner 157 1283 -19 940 151 7 13 chr6 81224110 81224282 -108055272 - AluSg/x SINE Alu 0 301 131 24 0 0 0 chr6 81224312 81224336 -108055218 + AT_rich Low_complexity Low_complexity 1 24 0 2334 71 0 7 chr6 81224807 81225101 -108054453 - AluY SINE Alu -19 292 1 229 292 10 69 chr6 81225155 81225357 -108054197 - L1M4 LINE L1 -2462 3684 3495 29 47 0 0 chr6 81225667 81225710 -108053844 + AT_rich Low_complexity Low_complexity 1 43 0 2292 73 44 3 chr6 81225862 81226179 -108053375 + L1PA7 LINE L1 5823 6152 -2 459 92 0 0 chr6 81228078 81228143 -108051411 + (TG)n Simple_repeat Simple_repeat 2 66 0 695 211 184 19 chr6 81231554 81231820 -108047734 - L1ME2 LINE L1 0 6164 5855 221 286 36 121 chr6 81232618 81232665 -108046889 + L2 LINE L2 3178 3227 -86 2217 105 0 3 chr6 81232665 81232970 -108046584 + AluSq SINE Alu 1 304 -9 221 286 36 121 chr6 81232970 81233062 -108046492 + L2 LINE L2 3227 3305 -8 505 261 36 29 chr6 81233805 81233943 -108045611 - MIR SINE MIR -111 151 13 24 32 0 0 chr6 81234151 81234182 -108045372 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 81234833 81234854 -108044700 + AT_rich Low_complexity Low_complexity 1 21 0 12895 131 46 6 chr6 81235005 81237114 -108042440 - Tigger1 DNA MER2_type -1 2417 224 2188 120 3 0 chr6 81237164 81237473 -108042081 + AluSq SINE Alu 1 310 -3 930 176 0 0 chr6 81237476 81237629 -108041925 - AluJb SINE Alu -155 157 5 2444 74 3 3 chr6 81238047 81238356 -108041198 + AluY SINE Alu 1 309 -2 303 314 124 65 chr6 81238458 81238627 -108040927 - MER91A DNA MER1_type -1 195 17 321 267 33 8 chr6 81238828 81238948 -108040606 + L1ME2 LINE L1 817 939 -5457 * 5340 149 30 8 chr6 81238932 81239856 -108039698 - L1MC2 LINE L1 0 6344 5400 2277 208 85 16 chr6 81239878 81240430 -108039124 - L1MCa LINE L1 -5818 608 19 989 239 109 76 chr6 81240421 81241091 -108038463 + L1ME2 LINE L1 905 1596 -4800 * 277 229 0 0 chr6 81241095 81241156 -108038398 + L1ME2 LINE L1 2680 2740 -3475 * 2260 230 81 62 chr6 81241150 81241528 -108038026 + L1ME2 LINE L1 4343 4712 -1503 392 83 17 17 chr6 81241528 81241588 -108037966 - U7 snRNA snRNA -3 60 1 2260 230 81 62 chr6 81241588 81242232 -108037322 + L1ME2 LINE L1 4712 5385 -830 1556 239 108 4 chr6 81242254 81242706 -108036848 + L1ME2 LINE L1 5451 5949 -284 250 302 0 35 chr6 81242727 81242813 -108036741 + L1ME2 LINE L1 6035 6117 -116 1804 156 28 59 chr6 81242869 81243227 -108036327 + MER7A DNA MER2_type 2 346 0 4368 172 40 16 chr6 81243612 81244566 -108034988 + L1MB5 LINE L1 5164 6139 -35 740 254 48 19 chr6 81245078 81245287 -108034267 + MIR SINE MIR 43 257 -5 771 181 23 0 chr6 81245597 81245730 -108033824 - AluJo SINE Alu -176 136 1 537 167 0 0 chr6 81246042 81246132 -108033422 + MER53 DNA DNA 100 189 0 1360 201 96 65 chr6 81246533 81246981 -108032573 + LTR40b LTR ERVL 1 462 0 22 0 0 0 chr6 81247278 81247300 -108032254 + AT_rich Low_complexity Low_complexity 1 22 0 291 154 0 0 chr6 81248111 81248176 -108031378 + A-rich Low_complexity Low_complexity 1 65 0 1137 217 19 0 chr6 81248313 81248520 -108031034 + MER58A DNA MER1_type 2 212 -12 572 244 53 43 chr6 81249044 81249347 -108030207 + L1ME3A LINE L1 3210 3515 -2700 * 1387 230 57 92 chr6 81249346 81249907 -108029647 + L1MC4 LINE L1 7455 7995 -47 2002 86 68 7 chr6 81249907 81250187 -108029367 - AluSq SINE Alu -16 297 1 1387 230 57 92 chr6 81250187 81250221 -108029333 + L1MC4 LINE L1 7995 8029 -13 279 234 234 9 chr6 81250229 81250340 -108029214 - L1 LINE L1 -1110 5036 4901 2008 232 72 35 chr6 81250428 81251365 -108028189 + L1ME3A LINE L1 5221 6154 -77 29 0 0 0 chr6 81251422 81251451 -108028103 + AT_rich Low_complexity Low_complexity 1 29 0 239 352 203 8 chr6 81252813 81252941 -108026613 - L2 LINE L2 -4 3268 3116 29591 127 18 62 chr6 81252966 81255560 -108023994 + L1PA7 LINE L1 13 2228 -3918 189 0 0 0 chr6 81255560 81255581 -108023973 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 29591 127 18 62 chr6 81255581 81258624 -108020930 + L1PA7 LINE L1 2228 5403 -743 4596 68 8 3 chr6 81258636 81259243 -108020311 + L1PA7 LINE L1 5544 6153 -1 241 287 128 21 chr6 81259449 81259543 -108020011 + L2 LINE L2 3210 3313 0 32 26 0 0 chr6 81260253 81260292 -108019262 + AT_rich Low_complexity Low_complexity 1 39 0 729 220 65 24 chr6 81260365 81260533 -108019021 - FAM SINE Alu 0 175 1 356 213 73 73 chr6 81260725 81260807 -108018747 - L1ME4a LINE L1 -216 5905 5824 2347 82 0 3 chr6 81260807 81261111 -108018443 - AluSx SINE Alu -9 303 1 356 213 73 73 chr6 81261111 81261192 -108018362 - L1ME4a LINE L1 -296 5825 5742 296 306 54 60 chr6 81261855 81262224 -108017330 - L1ME4a LINE L1 -439 5682 5316 25 31 0 0 chr6 81262783 81262815 -108016739 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr6 81263888 81263913 -108015641 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr6 81264509 81264541 -108015013 + AT_rich Low_complexity Low_complexity 1 32 0 245 224 15 0 chr6 81264862 81264929 -108014625 + LTR60 LTR ERV1 1 68 -518 1026 238 53 14 chr6 81265033 81265386 -108014168 + LTR43 LTR ERV1 179 577 -25 835 146 169 0 chr6 81266018 81266196 -108013358 + Tigger2 DNA MER2_type 6 213 -2505 788 203 13 0 chr6 81266193 81266346 -108013208 + Tigger2 DNA MER2_type 2554 2708 -10 * 468 291 57 64 chr6 81266443 81266832 -108012722 - L1ME4a LINE L1 -124 5997 5612 937 98 0 8 chr6 81267773 81267906 -108011648 - AluSg/x SINE Alu -5 307 176 2115 114 7 0 chr6 81267946 81268235 -108011319 - AluSq SINE Alu -22 291 1 282 276 133 0 chr6 81268945 81269043 -108010511 - MIR3 SINE MIR -6 202 92 194 240 20 0 chr6 81269702 81269752 -108009802 - L2 LINE L2 0 3313 3263 2249 132 9 12 chr6 81270056 81270389 -108009165 + MER1B DNA MER1_type 8 339 0 23 33 0 0 chr6 81270434 81270464 -108009090 + AT_rich Low_complexity Low_complexity 1 30 0 260 240 253 0 chr6 81270721 81270796 -108008758 + L2 LINE L2 3200 3293 -20 32 75 0 0 chr6 81271927 81271994 -108007560 + AT_rich Low_complexity Low_complexity 1 67 0 1687 166 54 7 chr6 81273220 81273515 -108006039 - AluJo SINE Alu -3 309 1 23 86 0 0 chr6 81274117 81274175 -108005379 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr6 81274489 81274511 -108005043 + AT_rich Low_complexity Low_complexity 1 22 0 800 171 16 0 chr6 81274515 81274644 -108004910 - AluJo SINE Alu -133 179 49 34 65 0 0 chr6 81275102 81275164 -108004390 + AT_rich Low_complexity Low_complexity 1 62 0 25 65 0 0 chr6 81276007 81276053 -108003501 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr6 81277040 81277062 -108002492 + AT_rich Low_complexity Low_complexity 1 22 0 2740 120 10 2 chr6 81277136 81277529 -108002025 + MSTA LTR MaLR 33 428 0 906 261 66 113 chr6 81279837 81280525 -107999029 + MER77 LTR ERV1 41 703 -6 186 133 0 0 chr6 81280593 81280623 -107998931 + (A)n Simple_repeat Simple_repeat 1 30 0 1978 229 114 12 chr6 81281279 81281851 -107997703 + L1MC4 LINE L1 6459 7088 -954 2338 231 42 12 chr6 81281870 81282467 -107997087 + L1MC4 LINE L1 7289 7903 -139 2841 269 99 43 chr6 81282683 81283134 -107996420 + L2 LINE L2 365 790 -2524 1634 122 4 22 chr6 81283134 81283405 -107996149 - L1PA11 LINE L1 -1 6173 5908 2841 269 99 43 chr6 81283405 81284034 -107995520 + L2 LINE L2 790 1505 -1809 203 211 105 13 chr6 81284034 81284110 -107995444 + L2 LINE L2 1761 1843 -1471 437 255 41 0 chr6 81284111 81284209 -107995345 + MLT1F LTR MaLR 1 102 -440 2149 108 3 7 chr6 81284227 81284522 -107995032 + AluSq SINE Alu 3 296 -17 645 145 145 0 chr6 81284559 81284683 -107994871 + MLT1F1 LTR MaLR 413 554 -13 536 238 87 0 chr6 81284689 81284815 -107994739 + L2 LINE L2 1841 1977 -1337 691 148 7 22 chr6 81284859 81284994 -107994560 - AluJ SINE Alu 0 312 180 293 98 0 59 chr6 81284996 81285047 -107994507 - AluJ SINE Alu -164 138 91 388 255 0 0 chr6 81285049 81285147 -107994407 + L2 LINE L2 1987 2084 -1230 501 239 43 8 chr6 81285189 81285306 -107994248 + MIR SINE MIR 2 122 -140 817 264 47 60 chr6 81285612 81285911 -107993643 - L2 LINE L2 0 3313 3019 707 309 101 7 chr6 81285912 81286190 -107993364 + HAL1 LINE L1 362 665 -1842 1952 228 39 58 chr6 81286195 81286709 -107992845 - LTR40a LTR ERVL -2 517 14 235 94 0 0 chr6 81286730 81286762 -107992792 + LTR40b LTR ERVL 431 462 0 1881 234 105 108 chr6 81286762 81287929 -107991625 + HAL1 LINE L1 664 1827 -680 21 0 0 0 chr6 81288656 81288677 -107990877 + AT_rich Low_complexity Low_complexity 1 21 0 298 355 41 8 chr6 81288890 81289011 -107990543 - L2 LINE L2 -203 3069 2945 666 174 0 0 chr6 81289088 81289197 -107990357 + L1MB1 LINE L1 5506 5614 -557 775 171 8 2 chr6 81289213 81289463 -107990091 + AluJ SINE Alu 12 303 -9 2413 159 46 0 chr6 81289463 81289898 -107989656 + L1MB1 LINE L1 5606 6060 -108 1976 125 6 61 chr6 81289898 81290227 -107989327 + AluSx SINE Alu 1 311 -1 322 319 18 18 chr6 81290405 81290518 -107989036 + L2 LINE L2 3201 3313 0 183 373 13 27 chr6 81290839 81290914 -107988640 - L2 LINE L2 -95 3177 3104 189 289 0 60 chr6 81291044 81291127 -107988427 - L3 LINE CR1 -695 882 805 1617 147 29 62 chr6 81291322 81291628 -107987926 + AluJo SINE Alu 1 296 -16 249 227 207 53 chr6 81292431 81292581 -107986973 - MIR SINE MIR -27 235 63 440 314 63 11 chr6 81292920 81293095 -107986459 - MIR SINE MIR -31 231 48 373 227 104 45 chr6 81293529 81293683 -107985871 - MIR SINE MIR -51 211 49 1807 110 4 0 chr6 81293759 81294004 -107985550 + AluSx SINE Alu 1 246 -66 258 95 0 0 chr6 81294063 81294105 -107985449 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 255 259 122 61 chr6 81294421 81294552 -107985002 + HAL1b LINE L1 751 889 -459 2008 99 3 11 chr6 81294850 81295132 -107984422 - AluSg SINE Alu -28 282 3 1927 87 0 0 chr6 81298777 81299019 -107980535 + AluSc SINE Alu 46 287 -22 234 150 0 0 chr6 81299428 81299468 -107980086 + (CATATA)n Simple_repeat Simple_repeat 4 43 0 288 0 0 0 chr6 81299468 81299500 -107980054 + (TG)n Simple_repeat Simple_repeat 2 33 0 8309 54 11 3 chr6 81299592 81301468 -107978086 + L1PA6 LINE L1 4290 6154 0 25 0 0 0 chr6 81303205 81303230 -107976324 + AT_rich Low_complexity Low_complexity 1 25 0 5522 136 20 25 chr6 81303742 81303839 -107975715 + L1MA7 LINE L1 4613 4709 -1582 2165 134 0 6 chr6 81303839 81304153 -107975401 + AluSx SINE Alu 1 312 0 5522 136 20 25 chr6 81304153 81305742 -107973812 + L1MA7 LINE L1 4709 6286 -5 3670 82 26 6 chr6 81305830 81306331 -107973223 + MER9 LTR ERVK 1 511 0 3920 78 12 21 chr6 81306331 81306904 -107972650 + HERVK9 LTR ERVK 1 568 -5348 8946 58 15 0 chr6 81306905 81308071 -107971483 + HERVK9 LTR ERVK 1113 2296 -3620 3773 126 8 2 chr6 81308047 81308634 -107970920 + HERVK9 LTR ERVK 5044 5634 -282 * 2252 102 13 12 chr6 81308659 81309012 -107970542 + HERVK9 LTR ERVK 5635 5916 0 3539 82 0 16 chr6 81309012 81309511 -107970043 + MER9 LTR ERVK 1 491 -20 512 173 79 24 chr6 81309564 81309691 -107969863 - MER58B DNA MER1_type -17 324 191 22 88 0 0 chr6 81310234 81310291 -107969263 + AT_rich Low_complexity Low_complexity 1 57 0 987 165 6 6 chr6 81310291 81310449 -107969105 - AluJb SINE Alu -3 309 152 237 33 0 0 chr6 81310449 81310479 -107969075 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1834 161 7 0 chr6 81310479 81310759 -107968795 - AluSx SINE Alu -30 282 1 1215 234 81 120 chr6 81311085 81311296 -107968258 + L1MC5 LINE L1 5283 5501 -2460 1142 186 26 117 chr6 81311296 81311673 -107967881 - MER7A DNA MER2_type -1 345 5 1215 234 81 120 chr6 81311673 81312903 -107966651 + L1MC5 LINE L1 5501 6778 -1183 2320 89 0 0 chr6 81312903 81313196 -107966358 + AluSg SINE Alu 5 297 -13 1215 234 81 120 chr6 81313196 81313478 -107966076 + L1MC5 LINE L1 6778 6898 -1063 2055 134 20 0 chr6 81313478 81313770 -107965784 - AluSx SINE Alu -14 298 1 1215 234 81 120 chr6 81313770 81314039 -107965515 + L1MC5 LINE L1 6898 7176 -785 2135 103 0 4 chr6 81314206 81314477 -107965077 - AluSq SINE Alu -43 270 1 311 203 43 0 chr6 81314479 81314548 -107965006 + L1MC5 LINE L1 7162 7233 -728 450 224 36 55 chr6 81314758 81314977 -107964577 + L1MC5 LINE L1 7517 7731 -230 717 269 33 5 chr6 81315222 81315550 -107964004 + L1MEc LINE L1 2194 2489 -3726 3806 165 29 23 chr6 81315560 81315710 -107963844 - MER44D DNA MER2_type -1882 605 457 1462 158 34 60 chr6 81315710 81316008 -107963546 - AluJo SINE Alu -22 290 1 3806 165 29 23 chr6 81316008 81316586 -107962968 - MER44D DNA MER2_type -2030 457 1 225 353 25 0 chr6 81317296 81317418 -107962136 - HAL1b LINE L1 -840 508 384 2392 97 0 0 chr6 81318679 81318979 -107960575 - AluSq SINE Alu -12 301 2 1216 123 0 0 chr6 81319201 81319372 -107960182 + AluSp SINE Alu 140 310 -3 2100 112 10 3 chr6 81319477 81319772 -107959782 + AluSq SINE Alu 1 297 -16 329 185 46 0 chr6 81319779 81319844 -107959710 - L1MC4 LINE L1 -1339 6703 6636 252 343 0 0 chr6 81320258 81320331 -107959223 + MER5C DNA MER1_type 3 75 -249 492 226 0 0 chr6 81321174 81321267 -107958287 + MLT1H LTR MaLR 259 351 -198 440 221 29 79 chr6 81321407 81321508 -107958046 - MER94 DNA DNA -1 133 39 2372 71 7 3 chr6 81321508 81321804 -107957750 + AluY SINE Alu 1 297 -14 440 221 29 79 chr6 81321804 81321842 -107957712 - MER94 DNA DNA -95 39 1 36 23 0 0 chr6 81322946 81322989 -107956565 + AT_rich Low_complexity Low_complexity 1 43 0 1012 268 112 39 chr6 81323191 81323673 -107955881 + MLT1H LTR MaLR 5 521 -28 567 209 78 63 chr6 81324420 81324523 -107955031 + MLT1H LTR MaLR 111 220 -329 2300 105 0 0 chr6 81324523 81324827 -107954727 - AluSx SINE Alu -8 304 1 567 209 78 63 chr6 81324827 81324914 -107954640 + MLT1H LTR MaLR 220 304 -245 2329 98 0 19 chr6 81325334 81325651 -107953903 - AluSx SINE Alu -1 311 1 22 35 0 0 chr6 81326302 81326331 -107953223 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr6 81326383 81326415 -107953139 + AT_rich Low_complexity Low_complexity 1 32 0 462 283 115 12 chr6 81327206 81327330 -107952224 - L1ME4a LINE L1 -164 5957 5847 2289 109 0 0 chr6 81327330 81327632 -107951922 - AluSx SINE Alu -10 302 1 462 283 115 12 chr6 81327632 81327751 -107951803 - L1ME4a LINE L1 -274 5847 5689 1417 219 85 58 chr6 81327828 81328276 -107951278 + LTR40a LTR ERVL 1 460 -2 2833 22 0 0 chr6 81328743 81329060 -107950494 - AluYb8 SINE Alu -1 317 1 287 111 0 37 chr6 81329115 81329169 -107950385 + (TATG)n Simple_repeat Simple_repeat 2 53 0 186 237 0 0 chr6 81329588 81329626 -107949928 + MIR SINE MIR 110 147 -115 * 272 246 72 0 chr6 81329624 81329693 -107949861 - L2 LINE L2 0 3313 3240 190 73 49 0 chr6 81329766 81329807 -107949747 + (TA)n Simple_repeat Simple_repeat 2 44 0 292 191 129 65 chr6 81331121 81331352 -107948202 + MLT1J LTR MaLR 2 273 -238 1490 245 171 9 chr6 81331527 81332103 -107947451 + L2 LINE L2 2653 3313 0 363 303 87 50 chr6 81332609 81332827 -107946727 - Charlie8 DNA MER1_type -2179 238 13 993 150 5 35 chr6 81333461 81333661 -107945893 + Charlie5 DNA MER1_type 1 194 -2418 1970 159 3 7 chr6 81333698 81334000 -107945554 + AluJb SINE Alu 1 301 -11 782 144 105 18 chr6 81334011 81334240 -107945314 + Charlie5 DNA MER1_type 2372 2620 0 2375 81 0 0 chr6 81335448 81335743 -107943811 - AluSg SINE Alu -15 295 1 1876 116 52 0 chr6 81336265 81336572 -107942982 + AluSx SINE Alu 1 321 0 1492 148 4 9 chr6 81337369 81337599 -107941955 + AluSx SINE Alu 1 229 -83 1216 194 98 35 chr6 81338430 81338820 -107940734 + MLT2B1 LTR ERVL 4 479 -41 314 157 0 29 chr6 81338823 81338893 -107940661 + (CATATA)n Simple_repeat Simple_repeat 6 73 0 319 309 0 0 chr6 81338893 81338974 -107940580 + MER94 DNA DNA 52 132 -2 2142 113 14 0 chr6 81339037 81339330 -107940224 + AluSx SINE Alu 1 297 -15 198 0 0 0 chr6 81339330 81339352 -107940202 + (TA)n Simple_repeat Simple_repeat 2 23 0 233 314 89 34 chr6 81339568 81339861 -107939693 + L1MEd LINE L1 532 840 -5279 2137 134 3 10 chr6 81340475 81340789 -107938765 - AluSx SINE Alu 0 312 1 293 198 104 62 chr6 81340907 81341003 -107938551 - MIR3 SINE MIR -7 201 102 809 157 77 16 chr6 81341339 81341497 -107938057 + THE1C LTR MaLR 1 140 -235 2213 116 3 7 chr6 81341497 81341807 -107937747 - AluSx SINE Alu -3 309 1 809 157 77 16 chr6 81341807 81341837 -107937717 + THE1C LTR MaLR 140 167 -208 2418 152 166 2 chr6 81341868 81342368 -107937186 - LTR12 LTR ERV1 -131 583 2 539 220 30 45 chr6 81342449 81342713 -107936841 - pTR5 LTR ERV1 -1410 1028 769 823 138 69 35 chr6 81342721 81342895 -107936659 + THE1C LTR MaLR 196 375 0 1965 44 0 0 chr6 81343020 81343249 -107936305 + AluY SINE Alu 83 311 0 2018 103 7 24 chr6 81343479 81343793 -107935761 + AluSp SINE Alu 1 309 0 2024 119 64 25 chr6 81344052 81344413 -107935141 + THE1C LTR MaLR 1 375 0 1612 189 104 43 chr6 81344581 81344996 -107934558 + L1MC4 LINE L1 6460 6913 -1129 1846 63 5 0 chr6 81344996 81345218 -107934336 + AluSp SINE Alu 78 300 -13 1612 189 104 43 chr6 81345218 81345309 -107934245 + L1MC4 LINE L1 6913 6997 -1045 368 128 11 225 chr6 81345726 81345913 -107933641 - L1MC4 LINE L1 -77 7965 7819 * 3937 225 67 43 chr6 81345901 81346349 -107933205 + L1MB8 LINE L1 4006 4442 -1736 2817 13 0 0 chr6 81346349 81346655 -107932899 + AluYa5 SINE Alu 1 306 -5 3937 225 67 43 chr6 81346655 81346755 -107932799 + L1MB8 LINE L1 4442 4538 -1640 1668 174 11 3 chr6 81346755 81347037 -107932517 + AluJb SINE Alu 13 296 -16 3937 225 67 43 chr6 81347037 81347107 -107932447 + L1MB8 LINE L1 4538 4605 -1573 1742 113 63 63 chr6 81347107 81347407 -107932147 - AluSx SINE Alu -12 300 1 3937 225 67 43 chr6 81347407 81348238 -107931316 + L1MB8 LINE L1 4605 5415 -763 1693 199 0 31 chr6 81348238 81348383 -107931171 + AluJo SINE Alu 1 149 -163 2299 92 7 3 chr6 81348383 81348687 -107930867 + AluSq SINE Alu 1 305 -8 1693 199 0 31 chr6 81348687 81348862 -107930692 + AluJo SINE Alu 149 311 -1 3937 225 67 43 chr6 81348862 81349071 -107930483 + L1MB8 LINE L1 5415 5618 -560 2764 9 0 28 chr6 81349071 81349390 -107930164 + AluYb8 SINE Alu 1 310 -8 3937 225 67 43 chr6 81349390 81349758 -107929796 + L1MB8 LINE L1 5618 6078 -100 2360 101 0 10 chr6 81349758 81350066 -107929488 + AluSx SINE Alu 1 305 -7 3937 225 67 43 chr6 81350066 81350164 -107929390 + L1MB8 LINE L1 6078 6172 -6 350 216 164 58 chr6 81350340 81350650 -107928904 - L1MC4a LINE L1 -1492 6316 5974 789 218 12 6 chr6 81350853 81351052 -107928502 + FRAM SINE Alu 1 64 0 2406 78 3 0 chr6 81351053 81351360 -107928194 + AluY SINE Alu 1 308 -3 1762 152 7 3 chr6 81351421 81351727 -107927827 + AluSx SINE Alu 1 307 0 386 261 119 40 chr6 81351847 81352003 -107927551 + L1MC4a LINE L1 5678 5859 -1949 1810 144 0 4 chr6 81352003 81352280 -107927274 - AluSx SINE Alu -36 276 1 386 261 119 40 chr6 81352280 81352349 -107927205 + L1MC4a LINE L1 5859 5921 -1887 444 304 13 19 chr6 81352881 81353039 -107926515 + MIR SINE MIR 51 207 -55 813 310 90 81 chr6 81354135 81354727 -107924827 + L3 LINE CR1 885 1485 -92 808 212 64 35 chr6 81354727 81354930 -107924624 + MER3 DNA MER1_type 1 209 0 813 310 90 81 chr6 81354930 81355002 -107924552 + L3 LINE CR1 1485 1555 -22 1574 176 0 44 chr6 81355236 81355395 -107924159 - AluJo SINE Alu -24 288 146 2213 114 30 0 chr6 81355395 81355694 -107923860 - AluSg SINE Alu -2 308 1 1574 176 0 44 chr6 81355694 81355829 -107923725 - AluJo SINE Alu -166 146 7 180 294 0 0 chr6 81356311 81356362 -107923192 - MIR SINE MIR -140 122 72 371 213 20 100 chr6 81356410 81356560 -107922994 - L2 LINE L2 -463 2851 2714 290 96 0 39 chr6 81356574 81356626 -107922928 - L1MA10 LINE L1 -8 6326 6277 3494 244 173 30 chr6 81356667 81357005 -107922549 + L2 LINE L2 827 1115 -2199 2281 112 0 6 chr6 81357005 81357319 -107922235 - AluSx SINE Alu 0 312 1 3494 244 173 30 chr6 81357319 81358434 -107921120 + L2 LINE L2 1115 2489 -825 960 337 119 48 chr6 81358682 81359147 -107920407 - L2 LINE L2 -449 2865 2434 2161 111 3 0 chr6 81359147 81359435 -107920119 + AluSp SINE Alu 1 289 -24 960 337 119 48 chr6 81359435 81359821 -107919733 - L2 LINE L2 -880 2434 1936 1532 212 15 74 chr6 81359821 81360212 -107919342 - MLT1A2 LTR MaLR -3 371 4 960 337 119 48 chr6 81360212 81360315 -107919239 - L2 LINE L2 -1378 1936 1842 2373 95 0 3 chr6 81360496 81360802 -107918752 + AluSq SINE Alu 1 305 -8 2430 205 83 58 chr6 81360946 81362015 -107917539 + MER45R DNA AcHobo 5 1362 -219 2558 52 3 3 chr6 81362015 81362325 -107917229 + AluY SINE Alu 1 310 -1 2430 205 83 58 chr6 81362325 81362551 -107917003 + MER45R DNA AcHobo 1362 1581 0 294 269 52 8 chr6 81363262 81363373 -107916181 - L1ME LINE L1 -272 5849 5730 2315 78 7 10 chr6 81363373 81363687 -107915867 - AluSx SINE Alu 0 312 1 294 269 52 8 chr6 81363687 81363709 -107915845 - L1ME LINE L1 -391 5730 5710 1610 215 52 6 chr6 81365066 81365415 -107914139 - MLT1A1 LTR MaLR 0 365 1 489 251 183 71 chr6 81366489 81366559 -107912995 + MLT1H LTR MaLR 123 184 -365 2036 120 33 10 chr6 81366559 81366858 -107912696 - AluSp SINE Alu -7 306 1 489 251 183 71 chr6 81366858 81367137 -107912417 + MLT1H LTR MaLR 184 511 -38 230 182 146 0 chr6 81367168 81367223 -107912331 + MLT1H LTR MaLR 487 549 0 1387 272 58 116 chr6 81367240 81367439 -107912115 + L2 LINE L2 2044 2253 -1061 2161 103 0 17 chr6 81367439 81367730 -107911824 + AluSc SINE Alu 1 286 -23 1387 272 58 116 chr6 81367730 81367756 -107911798 + L2 LINE L2 2253 2279 -1035 2273 108 0 3 chr6 81367756 81368063 -107911491 - AluSx SINE Alu -6 306 1 1387 272 58 116 chr6 81368063 81368154 -107911400 + L2 LINE L2 2279 2374 -940 2068 131 0 10 chr6 81368154 81368460 -107911094 - AluJb SINE Alu -9 303 1 1387 272 58 116 chr6 81368460 81368700 -107910854 + L2 LINE L2 2374 2627 -687 2374 98 3 0 chr6 81368700 81369005 -107910549 + AluSx SINE Alu 1 306 -6 1387 272 58 116 chr6 81369005 81369253 -107910301 + L2 LINE L2 2627 2793 -521 1637 260 23 45 chr6 81369253 81369723 -107909831 - LTR16B LTR ERVL 0 464 5 1387 272 58 116 chr6 81369723 81369834 -107909720 + L2 LINE L2 2793 2909 -405 1101 73 7 0 chr6 81369875 81370011 -107909543 - AluSp SINE Alu -176 137 1 1963 208 108 9 chr6 81370011 81370710 -107908844 - L1ME2 LINE L1 -335 5829 5069 1823 202 25 27 chr6 81370986 81371204 -107908350 - MLT1A1 LTR MaLR 0 365 147 2373 112 0 0 chr6 81371204 81371517 -107908037 - AluSq SINE Alu 0 313 1 1823 202 25 27 chr6 81371517 81371664 -107907890 - MLT1A1 LTR MaLR -218 147 1 319 258 0 32 chr6 81372072 81372165 -107907389 - MLT1K LTR MaLR -492 96 7 1525 168 31 48 chr6 81372581 81372872 -107906682 + AluJo SINE Alu 10 295 -17 290 231 31 0 chr6 81372955 81373020 -107906534 - L2 LINE L2 -2 3270 3204 284 232 32 53 chr6 81373086 81373181 -107906373 + L2 LINE L2 3208 3300 -13 2299 82 0 14 chr6 81373189 81373480 -107906074 - AluY SINE Alu -24 287 1 1877 126 4 4 chr6 81373769 81374039 -107905515 + AluSq SINE Alu 35 304 -9 950 54 0 0 chr6 81374438 81374549 -107905005 + L1PA3 LINE L1 6042 6152 -3 2349 97 0 0 chr6 81374745 81375043 -107904511 - AluSc SINE Alu -11 298 1 560 248 65 22 chr6 81375431 81375782 -107903772 + MLT1I LTR MaLR 15 406 -3 503 341 28 42 chr6 81376645 81377003 -107902551 + L2 LINE L2 2030 2382 -932 2200 118 0 3 chr6 81377165 81377461 -107902093 + AluSq SINE Alu 2 296 -17 215 31 31 0 chr6 81377464 81377496 -107902058 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 280 358 106 35 chr6 81378658 81379141 -107900413 + L2 LINE L2 2379 2895 -419 218 336 58 87 chr6 81379225 81379433 -107900121 + L2 LINE L2 2964 3165 -107 315 240 0 0 chr6 81379596 81379670 -107899884 + MER3 DNA MER1_type 41 114 -95 752 152 0 0 chr6 81379672 81379784 -107899770 + FLAM_C SINE Alu 2 113 -30 810 190 124 8 chr6 81379844 81380086 -107899468 + MER3 DNA MER1_type 2355 2624 0 2183 85 3 48 chr6 81380287 81380603 -107898951 - AluSp SINE Alu -10 303 2 185 164 109 36 chr6 81380980 81381035 -107898519 - L2 LINE L2 0 3272 3214 748 203 157 10 chr6 81381419 81381616 -107897938 + MIR SINE MIR 27 252 -10 263 270 0 0 chr6 81382132 81382195 -107897359 + (CCG)n Simple_repeat Simple_repeat 3 65 0 24 0 0 0 chr6 81384113 81384137 -107895417 + AT_rich Low_complexity Low_complexity 1 24 0 1531 100 13 46 chr6 81385650 81385889 -107893665 + AluSg/x SINE Alu 78 308 -4 1274 177 118 27 chr6 81385906 81386249 -107893305 - L1MB7 LINE L1 -163 6021 5647 457 358 103 16 chr6 81386519 81386955 -107892599 + L2 LINE L2 2825 3298 -15 189 74 0 0 chr6 81386957 81386984 -107892570 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 207 0 0 0 chr6 81388182 81388205 -107891349 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1704 174 30 0 chr6 81388399 81388698 -107890856 - AluJb SINE Alu -4 308 1 2095 128 0 13 chr6 81388977 81389281 -107890273 + AluSx SINE Alu 2 301 -11 364 198 12 23 chr6 81389503 81389589 -107889965 - MIR SINE MIR -34 228 144 2207 128 0 0 chr6 81389648 81389954 -107889600 + AluSx SINE Alu 1 306 -6 205 293 19 38 chr6 81389968 81390074 -107889480 - L2 LINE L2 -39 3274 3171 2204 237 30 0 chr6 81390090 81390559 -107888995 + MER68 LTR ERV1 73 555 -7 1549 181 19 45 chr6 81391060 81391369 -107888185 - AluJo SINE Alu 0 302 2 31 0 0 0 chr6 81391446 81391477 -107888077 + AT_rich Low_complexity Low_complexity 1 31 0 238 349 12 0 chr6 81391533 81391619 -107887935 + MIR3 SINE MIR 5 91 -117 1166 87 141 0 chr6 81391709 81391894 -107887660 - AluY SINE Alu -3 308 98 22 0 0 0 chr6 81391925 81391947 -107887607 + AT_rich Low_complexity Low_complexity 1 22 0 1505 174 32 58 chr6 81392806 81393117 -107886437 - MLT1D LTR MaLR 0 505 203 302 131 49 33 chr6 81393184 81393245 -107886309 - MLT1D LTR MaLR -441 64 3 2169 115 16 0 chr6 81393283 81393588 -107885966 - AluSx SINE Alu -2 310 1 3240 198 140 23 chr6 81393724 81394372 -107885182 + L1ME1 LINE L1 4207 5011 -1135 342 0 0 0 chr6 81394372 81394410 -107885144 + (CAA)n Simple_repeat Simple_repeat 1 38 0 3240 198 140 23 chr6 81394410 81394746 -107884808 + L1ME1 LINE L1 5011 5306 -840 802 244 90 4 chr6 81394748 81394982 -107884572 + L1ME1 LINE L1 5677 5930 -236 1628 173 3 3 chr6 81394985 81395291 -107884263 - AluSx SINE Alu -6 306 1 1681 154 23 42 chr6 81395515 81395821 -107883733 + AluJb SINE Alu 1 300 -12 2401 103 0 0 chr6 81396553 81396865 -107882689 - AluSx SINE Alu 0 312 1 2104 113 3 0 chr6 81397138 81397420 -107882134 + AluSx SINE Alu 7 289 -23 2113 103 7 14 chr6 81397541 81397833 -107881721 - AluSg1 SINE Alu -10 299 10 221 304 149 20 chr6 81398116 81398264 -107881290 - MIR3 SINE MIR -1 207 41 357 252 206 0 chr6 81399341 81399472 -107880082 + MIR SINE MIR 93 250 -12 197 225 0 0 chr6 81400076 81400116 -107879438 - L2 LINE L2 -1075 2239 2200 939 184 18 0 chr6 81400268 81400431 -107879123 - FRAM SINE Alu -2 174 9 302 200 50 0 chr6 81401252 81401312 -107878242 + MER20 DNA MER1_type 152 214 -5 672 228 136 5 chr6 81401399 81401583 -107877971 - MER3 DNA MER1_type -1 208 1 25 0 0 0 chr6 81401583 81401608 -107877946 + AT_rich Low_complexity Low_complexity 1 25 0 6229 209 68 34 chr6 81402056 81403391 -107876163 - L1MD2 LINE L1 -82 6346 5058 1918 114 3 35 chr6 81403391 81403681 -107875873 - AluSx SINE Alu -31 281 1 6229 209 68 34 chr6 81403681 81404679 -107874875 - L1MD2 LINE L1 -1370 5058 4095 2262 79 4 0 chr6 81404679 81404958 -107874596 - AluSp SINE Alu -13 300 21 6229 209 68 34 chr6 81404958 81405061 -107874493 - L1MD2 LINE L1 -2333 4095 3997 189 0 0 0 chr6 81405061 81405082 -107874472 + (TA)n Simple_repeat Simple_repeat 2 22 0 6229 209 68 34 chr6 81405082 81405677 -107873877 - L1MD2 LINE L1 -2431 3997 3213 * 6312 120 39 40 chr6 81405673 81407156 -107872398 - L1MA3 LINE L1 0 7724 6241 2429 80 0 0 chr6 81407156 81407455 -107872099 - AluY SINE Alu -12 299 1 6312 120 39 40 chr6 81407455 81407668 -107871886 - L1MA3 LINE L1 -1483 6241 6031 2405 98 0 0 chr6 81407668 81407974 -107871580 - AluSc SINE Alu -3 306 1 6312 120 39 40 chr6 81407974 81408053 -107871501 - L1MA3 LINE L1 -1693 6031 5953 17619 153 35 9 chr6 81409279 81411665 -107867889 - L1MA3 LINE L1 -1600 5965 3641 2194 118 0 10 chr6 81411665 81411978 -107867576 - AluSg SINE Alu 0 310 1 17619 153 35 9 chr6 81411978 81414343 -107865211 - L1MA3 LINE L1 -3924 3641 1066 1954 174 65 29 chr6 81414343 81414683 -107864871 + MSTA LTR MaLR 1 360 -68 1967 139 17 0 chr6 81414683 81414971 -107864583 - AluSx SINE Alu -19 293 1 1954 174 65 29 chr6 81414971 81415043 -107864511 + MSTA LTR MaLR 360 428 0 17619 153 35 9 chr6 81415043 81415518 -107864036 - L1MA3 LINE L1 -6499 1066 604 1267 154 77 9 chr6 81415518 81415739 -107863815 - AluJb SINE Alu -76 236 1 2954 171 59 2 chr6 81415739 81416299 -107863255 - L1MA3 LINE L1 -6958 607 16 1374 259 88 62 chr6 81416323 81417000 -107862554 - L1MD2 LINE L1 -4749 1647 989 1771 177 20 3 chr6 81417000 81417305 -107862249 - AluJb SINE Alu -2 310 1 1374 259 88 62 chr6 81417305 81417441 -107862113 - L1MD2 LINE L1 -5407 989 858 2156 114 13 20 chr6 81417441 81417747 -107861807 - AluSx SINE Alu -8 304 1 1374 259 88 62 chr6 81417747 81417995 -107861559 - L1MD2 LINE L1 -5538 858 558 980 302 68 9 chr6 81418001 81418425 -107861129 - L1MD2 LINE L1 -5895 501 53 283 294 34 34 chr6 81419335 81419481 -107860073 + L2 LINE L2 3168 3313 0 2040 127 7 3 chr6 81419626 81419918 -107859636 - AluSx SINE Alu -13 299 7 306 309 130 0 chr6 81419963 81420086 -107859468 + L3 LINE CR1 1364 1502 -75 302 335 88 16 chr6 81420102 81420284 -107859270 - MIR SINE MIR -21 241 47 1487 126 4 35 chr6 81421970 81422200 -107857354 - AluSg/x SINE Alu -3 307 85 10387 212 52 38 chr6 81422216 81423716 -107855838 - L1MA9 LINE L1 -38 6510 5032 1553 189 62 0 chr6 81423716 81423991 -107855563 - AluJb SINE Alu -16 296 5 10387 212 52 38 chr6 81423991 81424311 -107855243 - L1MA9 LINE L1 -1516 5032 4718 6137 139 74 15 chr6 81424311 81424584 -107854970 - Tigger3b DNA MER2_type -1797 1231 976 2378 82 0 13 chr6 81424584 81424890 -107854664 + AluSc SINE Alu 1 302 -7 6137 139 74 15 chr6 81424890 81425778 -107853776 - Tigger3b DNA MER2_type -2052 976 1 10387 212 52 38 chr6 81425778 81425897 -107853657 - L1MA9 LINE L1 -1830 4718 4602 2199 87 0 0 chr6 81425897 81426173 -107853381 - AluSq SINE Alu -9 304 29 10387 212 52 38 chr6 81426173 81427155 -107852399 - L1MA9 LINE L1 -1946 4602 3635 2280 117 7 3 chr6 81427155 81427462 -107852092 - AluSx SINE Alu 0 312 5 10387 212 52 38 chr6 81427462 81429460 -107850094 - L1MA9 LINE L1 -2913 3635 1403 1731 171 26 3 chr6 81429460 81429765 -107849789 - AluJb SINE Alu 0 312 1 10387 212 52 38 chr6 81429765 81429956 -107849598 - L1MA9 LINE L1 -5145 1403 1216 2327 130 112 69 chr6 81429957 81430117 -107849437 - MER1A DNA MER1_type -2173 529 377 2767 101 49 11 chr6 81430117 81430562 -107848992 - L1PB1 LINE L1 -1 6150 5689 2327 130 112 69 chr6 81430562 81430908 -107848646 - MER1A DNA MER1_type -2325 377 1 3749 222 39 15 chr6 81430908 81432080 -107847474 - L1M3d LINE L1 -4674 1217 2 181 299 117 68 chr6 81432594 81432875 -107846679 - L2 LINE L2 -685 2629 2335 2179 122 3 3 chr6 81432913 81433216 -107846338 + AluSg SINE Alu 1 303 -7 24 77 0 0 chr6 81433345 81433397 -107846157 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr6 81433672 81433701 -107845853 + AT_rich Low_complexity Low_complexity 1 29 0 530 205 169 72 chr6 81433816 81433953 -107845601 - L1MC4 LINE L1 -72 7970 7848 2603 99 6 0 chr6 81433953 81434306 -107845248 - THE1A LTR MaLR 0 355 1 7419 164 47 72 chr6 81434306 81435996 -107843558 - MST-int LTR MaLR 0 1651 3 2602 88 3 22 chr6 81435998 81436360 -107843194 - THE1A LTR MaLR 0 355 1 530 205 169 72 chr6 81436360 81436467 -107843087 - L1MC4 LINE L1 -194 7848 7698 3153 99 43 4 chr6 81436868 81437355 -107842199 - MER9 LTR ERVK -5 506 1 847 192 45 0 chr6 81437508 81437664 -107841890 - FRAM SINE Alu -3 163 1 915 261 115 32 chr6 81437788 81438136 -107841418 + L2 LINE L2 2937 3313 0 2253 105 3 40 chr6 81438544 81438868 -107840686 - AluSq SINE Alu -1 312 1 26 82 0 0 chr6 81439193 81439254 -107840300 + AT_rich Low_complexity Low_complexity 1 61 0 2576 47 0 0 chr6 81439477 81439773 -107839781 - AluY SINE Alu 0 311 16 258 288 48 40 chr6 81440466 81440591 -107838963 + MIR SINE MIR 112 237 -25 305 303 144 8 chr6 81440696 81440828 -107838726 - L2 LINE L2 -38 3275 3126 360 0 0 0 chr6 81441247 81441287 -107838267 + (TG)n Simple_repeat Simple_repeat 2 41 0 2075 143 0 3 chr6 81441473 81441781 -107837773 - AluSx SINE Alu -5 307 1 1962 154 0 10 chr6 81442151 81442450 -107837104 + AluJb SINE Alu 1 296 -16 266 291 25 0 chr6 81442450 81442529 -107837025 - MLT1J LTR MaLR -53 458 378 378 281 39 31 chr6 81442677 81442805 -107836749 - MLT1J LTR MaLR -382 129 1 2577 53 0 0 chr6 81443530 81443829 -107835725 + AluY SINE Alu 1 299 -12 381 43 0 0 chr6 81443832 81443879 -107835675 + (TG)n Simple_repeat Simple_repeat 2 48 0 370 284 167 19 chr6 81444234 81444396 -107835158 + MER5A DNA MER1_type 4 189 0 1224 206 8 30 chr6 81444466 81444728 -107834826 - AluJo SINE Alu -56 256 1 2147 118 0 13 chr6 81445166 81445472 -107834082 - AluSx SINE Alu -10 302 1 347 234 65 9 chr6 81446586 81446693 -107832861 - L1ME3A LINE L1 -218 5952 5840 326 276 67 13 chr6 81446714 81446939 -107832615 - L1ME3A LINE L1 -646 5518 5282 33 25 0 0 chr6 81447494 81447534 -107832020 + AT_rich Low_complexity Low_complexity 1 40 0 844 169 0 0 chr6 81448507 81448637 -107830917 - FLAM_A SINE Alu -3 130 1 2063 128 0 14 chr6 81449111 81449408 -107830146 - AluSx SINE Alu -19 293 1 646 219 68 10 chr6 81450103 81450308 -107829246 - L1ME2 LINE L1 -6 6158 5942 1594 185 25 0 chr6 81450458 81450739 -107828815 + AluSg SINE Alu 1 288 -22 2038 141 0 16 chr6 81452103 81452409 -107827145 - AluSx SINE Alu -11 301 1 492 264 46 66 chr6 81452944 81453141 -107826413 + L3 LINE CR1 1370 1562 -15 376 176 56 0 chr6 81454277 81454385 -107825169 + Charlie5 DNA MER1_type 2468 2581 -31 413 338 21 63 chr6 81454531 81454815 -107824739 - HAL1b LINE L1 -1073 275 4 1236 138 11 0 chr6 81455239 81455420 -107824134 + AluSx SINE Alu 1 183 -129 183 42 0 0 chr6 81455427 81455451 -107824103 + (A)n Simple_repeat Simple_repeat 1 24 0 2236 120 36 17 chr6 81455709 81456066 -107823488 - THE1B LTR MaLR 0 364 1 11296 106 4 9 chr6 81456066 81457654 -107821900 - THE1B-int LTR MaLR 0 1580 1 2186 124 30 30 chr6 81457654 81458018 -107821536 - THE1B LTR MaLR 0 364 1 15093 54 1 0 chr6 81459135 81461827 -107817727 - L1PA6 LINE L1 0 6154 3459 185 271 43 29 chr6 81462065 81462135 -107817419 + MIR SINE MIR 23 93 -115 263 365 123 15 chr6 81462628 81462831 -107816723 - L2 LINE L2 -661 2653 2429 22 80 0 0 chr6 81463393 81463443 -107816111 + AT_rich Low_complexity Low_complexity 1 50 0 1740 135 63 36 chr6 81464166 81464529 -107815025 - THE1C LTR MaLR -2 373 1 2276 118 0 0 chr6 81466112 81466418 -107813136 + AluSx SINE Alu 1 306 -6 29 0 0 0 chr6 81466641 81466670 -107812884 + AT_rich Low_complexity Low_complexity 1 29 0 424 297 22 22 chr6 81467367 81467505 -107812049 + MIR3 SINE MIR 7 144 -64 404 291 37 8 chr6 81467649 81467783 -107811771 + MIR SINE MIR 88 225 -37 531 230 75 0 chr6 81468369 81468530 -107811024 - MER104 DNA Tc2 -7 173 1 21 0 0 0 chr6 81468948 81468969 -107810585 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 81470213 81470238 -107809316 + AT_rich Low_complexity Low_complexity 1 25 0 2153 131 25 8 chr6 81470564 81470923 -107808631 + MER47A DNA MER2_type 1 365 -1 9067 27 0 0 chr6 81471944 81473785 -107805769 + L1PA2 LINE L1 4307 6147 -8 24 0 0 0 chr6 81473785 81473809 -107805745 + AT_rich Low_complexity Low_complexity 1 24 0 270 335 116 65 chr6 81473867 81474342 -107805212 - L2 LINE L2 -640 2674 2176 276 339 16 66 chr6 81475116 81475299 -107804255 - MIR SINE MIR -2 260 87 507 235 17 8 chr6 81476961 81477080 -107802474 - MIR SINE MIR -28 234 115 267 297 115 30 chr6 81477093 81477258 -107802296 - MIR SINE MIR 0 262 84 923 209 56 14 chr6 81477471 81477686 -107801868 + MER58A DNA MER1_type 1 224 0 28 29 0 0 chr6 81478123 81478158 -107801396 + AT_rich Low_complexity Low_complexity 1 35 0 7041 132 57 55 chr6 81478313 81479172 -107800382 + Tigger1 DNA MER2_type 2 865 -1553 1570 197 20 3 chr6 81479172 81479471 -107800083 - AluJo SINE Alu -8 304 1 7041 132 57 55 chr6 81479471 81480062 -107799492 + Tigger1 DNA MER2_type 865 1454 -964 1760 175 10 7 chr6 81480063 81480360 -107799194 - AluJb SINE Alu -14 298 1 2661 136 39 12 chr6 81480500 81480994 -107798560 - MER6 DNA MER2_type -8 857 351 41827 41 1 2 chr6 81481007 81487157 -107792397 - L1PA3 LINE L1 -3 6152 7 1549 224 18 0 chr6 81487165 81487491 -107792063 - MER6 DNA MER2_type -502 363 32 505 197 51 15 chr6 81487674 81487811 -107791743 + Charlie4 DNA MER1_type 1819 1960 -1 316 315 31 37 chr6 81488104 81488266 -107791288 + MIR SINE MIR 96 256 -6 204 226 19 38 chr6 81488484 81488537 -107791017 + MIR SINE MIR 19 70 -138 1831 191 15 0 chr6 81489175 81489515 -107790039 + MER7A DNA MER2_type 4 346 0 805 96 0 80 chr6 81489866 81489991 -107789563 + FLAM_C SINE Alu 11 125 -18 1877 137 65 0 chr6 81490007 81490285 -107789269 + AluSg SINE Alu 1 296 -14 30 0 0 0 chr6 81490555 81490585 -107788969 + AT_rich Low_complexity Low_complexity 1 30 0 2369 92 7 0 chr6 81491434 81491738 -107787816 - AluSc SINE Alu -3 306 1 3739 168 40 4 chr6 81491739 81492473 -107787081 - L1MA5 LINE L1 -120 6180 5421 1093 43 0 0 chr6 81492472 81492611 -107786943 - L1P LINE L1 -6004 142 4 * 1613 151 70 0 chr6 81492611 81493007 -107786547 - L1MA5 LINE L1 -756 5390 5003 2048 129 3 0 chr6 81493017 81493311 -107786243 - AluSx SINE Alu -17 295 1 944 105 7 0 chr6 81493336 81493479 -107786075 - L1MA2 LINE L1 0 6304 6161 1854 156 3 0 chr6 81493496 81493830 -107785724 - L1MA5 LINE L1 -2022 4124 3790 2033 259 144 27 chr6 81493876 81494991 -107784563 - L1M2b LINE L1 -5904 1305 60 2463 112 0 0 chr6 81495012 81495370 -107784184 + Charlie3 DNA MER1_type 211 568 -2142 407 181 43 21 chr6 81495367 81495461 -107784093 - MLT1E1 LTR MaLR -556 98 3 * 1847 180 0 20 chr6 81495553 81495859 -107783695 + AluJo SINE Alu 1 300 -12 286 269 62 31 chr6 81496104 81496234 -107783320 + MIR SINE MIR 99 232 -30 21 36 0 0 chr6 81496485 81496513 -107783041 + AT_rich Low_complexity Low_complexity 1 28 0 1088 94 0 0 chr6 81497779 81497928 -107781626 + MLT2A1 LTR ERVL 214 362 -82 702 54 0 0 chr6 81498090 81498182 -107781372 + L1PA4 LINE L1 7 98 -6048 * 37118 36 2 5 chr6 81498176 81503730 -107775824 + L1PA4 LINE L1 617 6155 0 315 284 117 73 chr6 81503810 81504230 -107775324 - L2 LINE L2 -224 3048 2587 845 257 11 32 chr6 81504444 81504724 -107774830 - L1ME2 LINE L1 -9 6155 5882 204 97 0 0 chr6 81504836 81504867 -107774687 + (T)n Simple_repeat Simple_repeat 1 31 0 769 169 0 15 chr6 81504878 81505008 -107774546 + FLAM_A SINE Alu 11 138 -4 520 165 12 0 chr6 81505036 81505121 -107774433 + FRAM SINE Alu 63 148 -28 2048 94 11 4 chr6 81505390 81505667 -107773887 - AluSx SINE Alu -1 311 33 238 239 0 45 chr6 81507698 81507765 -107771789 - L2 LINE L2 -72 3200 3137 8271 26 18 0 chr6 81557898 81559561 -107719993 + L1PA3 LINE L1 4382 6073 -82 23 33 0 0 chr6 81560691 81560721 -107718833 + AT_rich Low_complexity Low_complexity 1 30 0 331 258 21 0 chr6 81561536 81561629 -107717925 + L1MC5 LINE L1 7810 7904 -57 2637 173 33 11 chr6 81561758 81562215 -107717339 + MLT1C LTR MaLR 1 467 0 213 39 0 0 chr6 81562648 81562674 -107716880 + (T)n Simple_repeat Simple_repeat 1 26 0 12037 89 4 1 chr6 81562679 81565007 -107714547 - L1PA7 LINE L1 0 6154 3820 492 263 40 45 chr6 81565785 81565872 -107713682 - MER77 LTR ERV1 -4 601 532 2267 125 54 23 chr6 81565872 81566225 -107713329 + THE1B LTR MaLR 1 364 0 492 263 40 45 chr6 81566225 81566315 -107713239 - MER77 LTR ERV1 -73 532 443 606 196 123 45 chr6 81566325 81566504 -107713050 - MER77 LTR ERV1 -360 245 53 21 0 0 0 chr6 81566890 81566911 -107712643 + AT_rich Low_complexity Low_complexity 1 21 0 38541 92 9 6 chr6 81567466 81573588 -107705966 + L1PA6 LINE L1 11 6152 -2 827 259 109 18 chr6 81574067 81574401 -107705153 - MLT1G LTR MaLR -5 568 153 318 67 0 0 chr6 81574401 81574446 -107705108 + (GGGGA)n Simple_repeat Simple_repeat 4 48 0 426 69 0 0 chr6 81574485 81574543 -107705011 + (GGGGA)n Simple_repeat Simple_repeat 3 60 0 1068 159 21 21 chr6 81574974 81575163 -107704391 + MER5A DNA MER1_type 1 189 0 2253 80 0 40 chr6 81575286 81575618 -107703936 + AluY SINE Alu 1 311 0 2363 178 56 29 chr6 81575788 81576231 -107703323 + MSTB2 LTR MaLR 1 455 -2 492 209 89 44 chr6 81576355 81576513 -107703041 + MIR SINE MIR 98 262 0 1424 152 52 43 chr6 81578170 81578190 -107701364 - MER33 DNA MER1_type -2261 324 306 2258 139 30 24 chr6 81578190 81578563 -107700991 + THE1C LTR MaLR 1 375 0 1424 152 52 43 chr6 81578563 81578868 -107700686 - MER33 DNA MER1_type -2279 306 1 2622 199 15 82 chr6 81578873 81579467 -107700087 - MLT2B3 LTR ERVL 0 554 1 2011 188 43 34 chr6 81579626 81580087 -107699467 - MER31B LTR ERV1 0 543 2 24 32 0 0 chr6 81580266 81580297 -107699257 + AT_rich Low_complexity Low_complexity 1 31 0 269 202 29 106 chr6 81580833 81580881 -107698673 - MIR SINE MIR 0 262 225 2371 154 5 13 chr6 81580881 81581257 -107698297 + THE1C LTR MaLR 1 373 -2 269 202 29 106 chr6 81581257 81581312 -107698242 - MIR SINE MIR -37 225 167 323 308 8 43 chr6 81581381 81581498 -107698056 + MIR SINE MIR 11 123 -139 239 259 259 26 chr6 81581592 81581708 -107697846 - MIR3 SINE MIR -64 144 2 381 78 0 0 chr6 81582109 81582160 -107697394 - MLT2B1 LTR ERVL -469 51 1 26 0 0 0 chr6 81582375 81582401 -107697153 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr6 81582460 81582482 -107697072 + AT_rich Low_complexity Low_complexity 1 22 0 286 220 209 0 chr6 81582727 81582818 -107696736 - MIR3 SINE MIR -41 167 58 1018 149 101 43 chr6 81583040 81583195 -107696359 - AluJo SINE Alu -28 284 113 333 0 0 0 chr6 81583195 81583232 -107696322 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 1018 149 101 43 chr6 81583232 81583284 -107696270 - AluJo SINE Alu -199 113 65 22 0 0 0 chr6 81583774 81583796 -107695758 + AT_rich Low_complexity Low_complexity 1 22 0 316 279 131 8 chr6 81584001 81584123 -107695431 + MIR SINE MIR 17 153 -109 388 266 71 0 chr6 81584242 81584355 -107695199 + MIR SINE MIR 138 258 -4 25 31 0 0 chr6 81588389 81588421 -107691133 + GC_rich Low_complexity Low_complexity 1 32 0 308 279 155 17 chr6 81591317 81591433 -107688121 - MIR SINE MIR -61 147 41 399 21 0 0 chr6 81592524 81592572 -107686982 + (TG)n Simple_repeat Simple_repeat 1 48 0 189 74 0 0 chr6 81592572 81592599 -107686955 + (GA)n Simple_repeat Simple_repeat 2 28 0 1427 202 14 18 chr6 81592600 81592882 -107686672 - AluJo SINE Alu -31 281 1 587 231 56 19 chr6 81593062 81593222 -107686332 + MIR SINE MIR 25 190 -72 675 223 132 30 chr6 81593625 81593703 -107685851 - LTR50 LTR ERVL 0 795 726 2065 89 60 3 chr6 81593703 81593985 -107685569 + AluSc SINE Alu 1 298 -11 675 223 132 30 chr6 81593985 81594171 -107685383 - LTR50 LTR ERVL -69 726 504 1145 60 0 0 chr6 81594339 81594473 -107685081 + L1PA10 LINE L1 6035 6168 0 264 169 34 17 chr6 81594475 81594534 -107685020 + Zaphod DNA AcHobo 1293 1352 -2679 * 324 186 70 47 chr6 81594506 81594592 -107684962 + Zaphod DNA AcHobo 3944 4031 0 515 287 12 12 chr6 81594779 81594940 -107684614 - LTR41 LTR ERVL -602 193 21 254 246 76 59 chr6 81595193 81595311 -107684243 - L1ME3 LINE L1 -81 6081 5962 2182 226 120 40 chr6 81595372 81596330 -107683224 - L1MC5 LINE L1 -409 7552 6615 2285 107 3 0 chr6 81596431 81596729 -107682825 - AluSp SINE Alu -14 299 1 3015 198 138 16 chr6 81596864 81597591 -107681963 - MER21B LTR ERV1 -7 856 42 347 243 14 0 chr6 81597593 81597663 -107681891 - MER21B LTR ERV1 -774 89 19 232 299 0 13 chr6 81597670 81597747 -107681807 - MER77 LTR ERV1 -469 136 61 409 214 0 0 chr6 81597773 81597843 -107681711 - MER21B LTR ERV1 -779 84 15 22 70 0 0 chr6 81597872 81597915 -107681639 + AT_rich Low_complexity Low_complexity 1 43 0 396 332 32 18 chr6 81598494 81598714 -107680840 - HAL1b LINE L1 -746 602 380 1265 148 30 21 chr6 81598978 81599215 -107680339 - L1MB3 LINE L1 -2 6181 5943 21 57 0 0 chr6 81599412 81599447 -107680107 + AT_rich Low_complexity Low_complexity 1 35 0 1043 80 0 0 chr6 81600092 81600217 -107679337 - AluSq/x SINE Alu -170 143 19 328 118 0 0 chr6 81600517 81600568 -107678986 + Alu SINE Alu 242 292 -10 2245 117 0 3 chr6 81600673 81600980 -107678574 - AluSc SINE Alu -3 306 1 472 327 67 9 chr6 81601070 81601416 -107678138 - L1M4 LINE L1 -2391 3755 3390 242 54 0 27 chr6 81601426 81601463 -107678091 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1060 235 86 62 chr6 81601463 81601795 -107677759 - L1M4 LINE L1 -2915 3231 2879 1688 197 3 13 chr6 81601795 81602099 -107677455 - AluJo SINE Alu -11 301 1 1060 235 86 62 chr6 81602099 81602311 -107677243 - L1M4 LINE L1 -3267 2879 2674 774 334 119 8 chr6 81602678 81603049 -107676505 + L2 LINE L2 87 498 -2816 450 235 31 0 chr6 81603051 81603149 -107676405 + MER5A DNA MER1_type 6 106 -83 607 287 44 91 chr6 81603212 81603774 -107675780 + L2 LINE L2 2761 3298 -15 15418 176 26 14 chr6 81603993 81607934 -107671620 - L1PA15 LINE L1 -7 6158 2170 829 112 0 0 chr6 81607938 81608045 -107671509 - U6 snRNA snRNA 0 107 1 232 325 102 51 chr6 81608512 81608669 -107670885 + L2 LINE L2 2090 2254 -1060 274 294 142 82 chr6 81608796 81609184 -107670370 + L2 LINE L2 2857 3267 -5 394 335 33 23 chr6 81610791 81610923 -107668631 + MIR SINE MIR 22 153 -66 2171 175 54 7 chr6 81611644 81612049 -107667505 - MSTB LTR MaLR -2 424 1 644 230 67 18 chr6 81612134 81612299 -107667255 - MIR SINE MIR -61 201 29 309 195 0 37 chr6 81612475 81612557 -107666997 - MER3 DNA MER1_type 0 209 131 875 166 31 6 chr6 81612613 81612776 -107666778 - MER3 DNA MER1_type -87 122 3 334 300 29 71 chr6 81612847 81613017 -107666537 - L2 LINE L2 -159 3113 2951 28 0 0 0 chr6 81614280 81614308 -107665246 + AT_rich Low_complexity Low_complexity 1 28 0 293 331 93 7 chr6 81614959 81615110 -107664444 - MIR3 SINE MIR -24 184 21 493 221 37 37 chr6 81615225 81615388 -107664166 + MER103 DNA DNA 3 165 -1 230 255 0 0 chr6 81615738 81615785 -107663769 + (CA)n Simple_repeat Simple_repeat 1 47 0 324 319 65 22 chr6 81615955 81616184 -107663370 + L1MEd LINE L1 592 830 -5289 3162 251 57 30 chr6 81616217 81617062 -107662492 + L1MDa LINE L1 18 885 -5655 3230 184 54 32 chr6 81617081 81617351 -107662203 + L1MDa LINE L1 1747 2010 -4530 2348 95 0 7 chr6 81617351 81617655 -107661899 + AluSx SINE Alu 1 302 -10 3230 184 54 32 chr6 81617655 81618222 -107661332 + L1MDa LINE L1 2010 2602 -3938 2430 243 34 13 chr6 81618220 81619052 -107660502 + L1MDa LINE L1 2812 3660 -2880 * 2395 170 117 6 chr6 81619050 81619556 -107659998 + L1MD1 LINE L1 5661 6222 -20 * 234 0 0 0 chr6 81619627 81619653 -107659901 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 402 70 18 0 chr6 81619654 81619711 -107659843 - L1PA11 LINE L1 -10 6164 6107 1694 198 54 52 chr6 81619719 81620124 -107659430 - L1PA12 LINE L1 -7166 415 10 1752 164 36 0 chr6 81620155 81620435 -107659119 + AluJb SINE Alu 1 290 -22 213 94 0 0 chr6 81621972 81622004 -107657550 + (CATTC)n Simple_repeat Simple_repeat 1 32 0 563 339 83 17 chr6 81622233 81622584 -107656970 - L3 LINE CR1 -4 1573 1200 185 380 0 0 chr6 81622700 81622771 -107656783 + MIR SINE MIR 32 102 -106 2201 122 61 3 chr6 81622816 81623160 -107656394 - THE1B LTR MaLR 0 364 1 432 272 43 19 chr6 81626014 81626176 -107653378 + MER112 DNA MER1_type 66 231 -29 221 299 78 0 chr6 81626203 81626280 -107653274 + MIR SINE MIR 47 129 -133 3420 200 14 20 chr6 81626499 81627259 -107652295 + L1MD2 LINE L1 5601 6356 -3 300 70 0 0 chr6 81627318 81627361 -107652193 + (CA)n Simple_repeat Simple_repeat 1 43 0 1619 183 102 0 chr6 81627871 81628193 -107651361 + MSTA LTR MaLR 1 355 -73 329 222 42 0 chr6 81628196 81628268 -107651286 + MER5C DNA MER1_type 34 108 -216 209 184 0 0 chr6 81629873 81629911 -107649643 + (CA)n Simple_repeat Simple_repeat 1 38 0 366 107 0 0 chr6 81630939 81630995 -107648559 + (CA)n Simple_repeat Simple_repeat 2 57 0 194 408 0 13 chr6 81631379 81631455 -107648099 + MIR SINE MIR 18 92 -170 520 283 11 63 chr6 81631566 81631629 -107647925 - MER5A DNA MER1_type 0 189 124 1695 164 66 0 chr6 81631629 81631916 -107647638 + AluSx SINE Alu 1 306 -6 520 283 11 63 chr6 81631916 81632043 -107647511 - MER5A DNA MER1_type -65 124 9 252 100 0 0 chr6 81632173 81632213 -107647341 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 462 226 168 13 chr6 81632250 81632405 -107647149 + MER5A DNA MER1_type 10 188 -1 34 24 0 0 chr6 81632468 81632509 -107647045 + AT_rich Low_complexity Low_complexity 1 41 0 616 253 40 0 chr6 81633370 81633520 -107646034 + MIR SINE MIR 55 210 -52 374 43 0 0 chr6 81633604 81633681 -107645873 + L1PA7 LINE L1 6094 6170 0 299 203 0 0 chr6 81634711 81634770 -107644784 + LTR16C LTR ERVL 417 475 -16 316 235 147 4 chr6 81635644 81635766 -107643788 - MIR SINE MIR -62 146 19 307 182 30 101 chr6 81635751 81635850 -107643704 + L2 LINE L2 3179 3270 -2 * 405 0 0 0 chr6 81637026 81637071 -107642483 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 415 291 54 89 chr6 81639040 81639298 -107640256 + HAL1 LINE L1 1115 1363 -1144 364 196 167 0 chr6 81639328 81639430 -107640124 + L2 LINE L2 3194 3312 -1 267 233 67 11 chr6 81639438 81639528 -107640026 + HAL1 LINE L1 1437 1531 -976 229 275 107 23 chr6 81639784 81639915 -107639639 + L1M4 LINE L1 3806 3947 -2199 205 62 146 0 chr6 81640026 81640074 -107639480 + (TTAA)n Simple_repeat Simple_repeat 3 57 0 186 0 88 0 chr6 81640157 81640191 -107639363 + (TA)n Simple_repeat Simple_repeat 2 38 0 229 316 111 42 chr6 81640310 81640876 -107638678 + L1M4 LINE L1 4331 4935 -1211 1478 132 66 8 chr6 81640903 81641146 -107638408 - AluSq SINE Alu -56 257 1 36929 44 3 4 chr6 81641168 81641324 -107638230 - L1PA2 LINE L1 -4 6287 6132 11081 172 36 16 chr6 81641324 81644431 -107635123 - L1PA13 LINE L1 -2 7599 4463 36929 44 3 4 chr6 81644431 81649678 -107629876 - L1PA2 LINE L1 -159 6132 900 339 194 0 0 chr6 81649698 81649765 -107629789 - L1 LINE L1 -3117 3029 2963 4112 201 11 1 chr6 81649775 81650596 -107628958 - L1PA13 LINE L1 -3143 4441 3613 3303 293 30 50 chr6 81650596 81652220 -107627334 - L1PA13 LINE L1 -5489 2092 608 1750 247 44 25 chr6 81652427 81652900 -107626654 - MLT1E2 LTR MaLR -29 597 116 21 0 0 0 chr6 81652902 81652923 -107626631 + AT_rich Low_complexity Low_complexity 1 21 0 7893 139 12 5 chr6 81652923 81655270 -107624284 - L1MA3 LINE L1 0 7724 5360 5663 184 43 2 chr6 81655275 81656257 -107623297 - L1MA3 LINE L1 -6530 1035 14 915 121 0 15 chr6 81656262 81656394 -107623160 - FRAM SINE Alu -23 153 24 1819 152 33 3 chr6 81656411 81656747 -107622807 - L1MD1 LINE L1 -1 6241 5896 1503 263 43 31 chr6 81656747 81657591 -107621963 - L1MDa LINE L1 -3453 2762 1786 3430 224 53 34 chr6 81657591 81658656 -107620898 + L1MD1 LINE L1 3969 5054 -1092 1244 150 5 10 chr6 81658672 81658872 -107620682 + AluSg/x SINE Alu 107 305 -7 * 4103 172 44 44 chr6 81658862 81660053 -107619501 + L1MD1 LINE L1 5051 6242 0 2312 93 0 10 chr6 81660784 81661084 -107618470 + AluSc SINE Alu 1 297 -12 5749 30 0 0 chr6 81661107 81661828 -107617726 - L1PA2 LINE L1 -853 5293 4573 7456 15 0 0 chr6 81661828 81662674 -107616880 + L1PA2 LINE L1 5306 6151 -4 489 306 19 13 chr6 81662811 81662968 -107616586 + L1MC/D LINE L1 5452 5609 -2199 1109 264 75 33 chr6 81662984 81663408 -107616146 - LTR16B LTR ERVL 0 464 23 256 276 16 24 chr6 81663467 81663590 -107615964 + L1MC/D LINE L1 5704 5825 -1983 1027 207 28 9 chr6 81663682 81663895 -107615659 + U3 snRNA snRNA 1 217 0 32 0 0 0 chr6 81663899 81663931 -107615623 + AT_rich Low_complexity Low_complexity 1 32 0 321 143 32 16 chr6 81664000 81664063 -107615491 + L1MC/D LINE L1 5709 5772 -470 347 0 23 0 chr6 81665136 81665179 -107614375 + (TG)n Simple_repeat Simple_repeat 1 44 0 238 336 95 9 chr6 81665283 81665399 -107614155 + MIR3 SINE MIR 8 133 -75 181 268 102 127 chr6 81665463 81665553 -107614001 - MER5B DNA MER1_type -25 153 67 2286 81 7 14 chr6 81665553 81665849 -107613705 - AluSq SINE Alu -19 294 1 181 268 102 127 chr6 81665849 81665915 -107613639 - MER5B DNA MER1_type -111 67 1 358 265 152 81 chr6 81667092 81667401 -107612153 - L3 LINE CR1 -2 1575 1245 6945 171 58 17 chr6 81667447 81669811 -107609743 + L1PBa LINE L1 1 1733 -5129 2234 103 7 0 chr6 81669811 81670101 -107609453 + AluSp SINE Alu 1 292 -21 6945 171 58 17 chr6 81670101 81672763 -107606791 + L1PBa LINE L1 1733 4286 -2576 342 129 14 29 chr6 81672772 81672842 -107606712 + L1PB2 LINE L1 6077 6145 -6 34 0 0 0 chr6 81673024 81673058 -107606496 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr6 81673591 81673612 -107605942 + AT_rich Low_complexity Low_complexity 1 21 0 1989 113 0 73 chr6 81673701 81674029 -107605525 - AluSx SINE Alu -8 304 1 21 0 0 0 chr6 81674102 81674123 -107605431 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 81674691 81674716 -107604838 + AT_rich Low_complexity Low_complexity 1 25 0 227 137 0 20 chr6 81674855 81674906 -107604648 + (TTC)n Simple_repeat Simple_repeat 2 51 0 394 318 8 95 chr6 81675802 81676044 -107603510 - L2 LINE L2 -5 3267 3047 21 36 0 0 chr6 81676386 81676414 -107603140 + AT_rich Low_complexity Low_complexity 1 28 0 1952 134 7 3 chr6 81677366 81677657 -107601897 - AluSx SINE Alu -18 294 3 245 294 17 63 chr6 81677936 81678078 -107601476 + MIR SINE MIR 59 198 -64 192 363 112 19 chr6 81679331 81679590 -107599964 - L2 LINE L2 -444 2870 2588 782 275 142 33 chr6 81680881 81681241 -107598313 + MER69 DNA AcHobo 108 506 -2020 650 171 0 20 chr6 81681261 81681407 -107598147 + MER69 DNA AcHobo 2010 2152 -374 444 29 58 0 chr6 81681408 81681477 -107598077 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 455 223 64 25 chr6 81681479 81681681 -107597873 + MER69 DNA AcHobo 2140 2349 -177 792 143 93 7 chr6 81681686 81681826 -107597728 + MER45A DNA AcHobo 2 153 -25 1985 132 0 4 chr6 81681826 81682151 -107597403 + AluSx SINE Alu 3 326 0 602 204 33 0 chr6 81682206 81682358 -107597196 + MER69 DNA AcHobo 2357 2513 -13 378 0 0 0 chr6 81683524 81683566 -107595988 + (CA)n Simple_repeat Simple_repeat 1 42 0 536 340 51 30 chr6 81684921 81685412 -107594142 + MERVL LTR ERVL 3920 4420 -1065 320 282 0 40 chr6 81686093 81686242 -107593312 + MERVL LTR ERVL 5145 5287 -367 1563 153 91 57 chr6 81686321 81686349 -107593205 - MLT1A1 LTR MaLR 0 365 339 213 39 0 0 chr6 81686349 81686375 -107593179 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1563 153 91 57 chr6 81686375 81686699 -107592855 - MLT1A1 LTR MaLR -26 339 1 537 291 110 10 chr6 81686808 81687107 -107592447 + LTR16B LTR ERVL 6 334 -130 833 195 164 63 chr6 81687302 81687708 -107591846 + MLT1C LTR MaLR 12 466 -1 401 279 59 0 chr6 81687709 81687845 -107591709 - LTR16B LTR ERVL -108 356 213 248 217 36 36 chr6 81687898 81687981 -107591573 + L1ME3A LINE L1 5864 5946 -224 21 0 0 0 chr6 81688256 81688277 -107591277 + AT_rich Low_complexity Low_complexity 1 21 0 282 296 80 53 chr6 81688291 81688555 -107590999 + L1ME LINE L1 5324 5594 -527 52 64 0 0 chr6 81688594 81688688 -107590866 + AT_rich Low_complexity Low_complexity 1 94 0 11597 175 19 68 chr6 81688940 81695516 -107584038 + L1PB2 LINE L1 1 6201 -7 6286 109 21 20 chr6 81695730 81696904 -107582650 - L1MA3 LINE L1 0 6305 5131 1789 191 67 45 chr6 81699899 81700392 -107579162 + MLT1D LTR MaLR 1 504 -1 3921 178 22 7 chr6 81700393 81701113 -107578441 + MER44D DNA MER2_type 3 605 0 220 256 220 63 chr6 81701462 81701653 -107577901 + L3 LINE CR1 1352 1572 -5 22 35 0 0 chr6 81701662 81701691 -107577863 + AT_rich Low_complexity Low_complexity 1 29 0 1684 164 6 42 chr6 81703902 81704238 -107575316 - LTR1 LTR ERV1 0 785 462 611 115 0 18 chr6 81704240 81704353 -107575201 - LTR1 LTR ERV1 -674 111 1 452 301 53 0 chr6 81704353 81704486 -107575068 + MIR3 SINE MIR 48 187 -21 234 0 0 0 chr6 81706375 81706401 -107573153 + (TG)n Simple_repeat Simple_repeat 1 26 0 343 20 59 0 chr6 81706411 81706462 -107573092 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 272 261 96 26 chr6 81706735 81706850 -107572704 + MIR SINE MIR 125 247 -15 793 256 101 9 chr6 81710167 81710394 -107569160 - MIR SINE MIR 0 262 15 265 390 50 0 chr6 81710504 81710645 -107568909 - MIR SINE MIR -87 175 28 215 303 68 38 chr6 81711170 81711302 -107568252 - L2 LINE L2 0 3272 3137 755 295 161 25 chr6 81711810 81712400 -107567154 - L2 LINE L2 -777 2537 1868 1116 242 52 60 chr6 81712967 81713463 -107566091 + L1ME3A LINE L1 5669 6160 -10 21 36 0 0 chr6 81713463 81713491 -107566063 + AT_rich Low_complexity Low_complexity 1 28 0 423 287 118 45 chr6 81713666 81714352 -107565202 + L1MDa LINE L1 1293 2028 -4512 32 0 0 0 chr6 81715596 81715628 -107563926 + AT_rich Low_complexity Low_complexity 1 32 0 4749 93 10 16 chr6 81715628 81716338 -107563216 - L1MA2 LINE L1 0 6304 5599 412 233 142 8 chr6 81716816 81716936 -107562618 + L2 LINE L2 2941 3076 -196 426 258 113 0 chr6 81717291 81717415 -107562139 - MIR SINE MIR -123 139 2 423 193 84 59 chr6 81717674 81717793 -107561761 + MER5C DNA MER1_type 3 124 -200 391 246 22 87 chr6 81718186 81718324 -107561230 + MIR3 SINE MIR 13 141 -67 196 346 0 0 chr6 81718359 81718411 -107561143 + MIR3 SINE MIR 144 195 -13 23 0 0 0 chr6 81720053 81720076 -107559478 + AT_rich Low_complexity Low_complexity 1 23 0 298 234 40 81 chr6 81720413 81720537 -107559017 - MIR SINE MIR -69 139 21 1542 167 82 72 chr6 81721377 81721767 -107557787 + MSTD LTR MaLR 1 394 -2 2454 50 0 0 chr6 81721959 81722288 -107557266 - AluY SINE Alu 0 311 1 2165 109 0 13 chr6 81722319 81722622 -107556932 + AluSg1 SINE Alu 1 299 -10 410 159 53 6 chr6 81723211 81723381 -107556173 + (TA)n Simple_repeat Simple_repeat 1 178 0 229 295 16 0 chr6 81724454 81724515 -107555039 - L2 LINE L2 -4 3309 3248 11974 169 31 26 chr6 81724728 81726181 -107553373 + L1MA6 LINE L1 2554 3999 -2301 2339 155 39 10 chr6 81726181 81726595 -107552959 + MSTA LTR MaLR 3 428 0 11974 169 31 26 chr6 81726595 81728873 -107550681 + L1MA6 LINE L1 3999 6300 0 221 333 0 0 chr6 81729461 81729521 -107550033 - L2 LINE L2 -5 3267 3208 687 205 0 0 chr6 81730356 81730473 -107549081 + FLAM_A SINE Alu 1 117 -16 462 61 0 0 chr6 81730478 81730544 -107549010 + (CATA)n Simple_repeat Simple_repeat 2 67 0 331 256 128 46 chr6 81731133 81731328 -107548226 + L1MC4a LINE L1 5981 6191 -1617 350 220 76 68 chr6 81731344 81731462 -107548092 - L2 LINE L2 0 3272 3154 622 283 47 26 chr6 81731683 81731874 -107547680 + MIR SINE MIR 18 212 -50 393 274 30 28 chr6 81732428 81732778 -107546776 + L1MC/D LINE L1 5191 5399 -747 1091 219 83 36 chr6 81732782 81733246 -107546308 + MER39 LTR ERV1 9 682 -25 637 256 72 0 chr6 81733288 81733511 -107546043 + L1MC/D LINE L1 5574 5812 -1996 776 186 8 0 chr6 81733550 81733679 -107545875 + FRAM SINE Alu 1 127 -49 25 0 0 0 chr6 81734019 81734044 -107545510 + AT_rich Low_complexity Low_complexity 1 25 0 632 294 55 30 chr6 81734394 81734629 -107544925 + MIR SINE MIR 1 241 -21 184 211 70 18 chr6 81735088 81735145 -107544409 + MER5A DNA MER1_type 16 75 -114 2193 106 3 0 chr6 81735655 81735960 -107543594 + AluSx SINE Alu 1 306 0 2239 123 12 54 chr6 81738123 81738552 -107541002 - MER83 LTR ERV1 -37 411 1 2202 136 0 0 chr6 81740200 81740501 -107539053 + AluSx SINE Alu 1 301 -11 445 226 45 55 chr6 81740745 81740872 -107538682 + MIR3 SINE MIR 69 194 -14 269 330 97 32 chr6 81742537 81742747 -107536807 - MIR SINE MIR -34 174 4 234 105 0 0 chr6 81743765 81743803 -107535751 + (CA)n Simple_repeat Simple_repeat 2 39 0 285 267 230 24 chr6 81744084 81744249 -107535305 - MIR3 SINE MIR -6 202 4 1074 147 66 0 chr6 81744374 81744571 -107534983 + L1PA16 LINE L1 5956 6165 -1 279 0 0 0 chr6 81744862 81744893 -107534661 + (CA)n Simple_repeat Simple_repeat 1 31 0 330 287 176 32 chr6 81745650 81745838 -107533716 - MIR SINE MIR 0 262 48 1506 218 91 71 chr6 81746083 81746220 -107533334 - MLT1E2 LTR MaLR -26 600 467 1809 177 3 16 chr6 81746220 81746525 -107533029 + AluJo SINE Alu 1 301 -11 1506 218 91 71 chr6 81746525 81746925 -107532629 - MLT1E2 LTR MaLR -159 467 52 248 105 0 0 chr6 81747141 81747179 -107532375 - Alu SINE Alu -232 70 33 1587 165 70 23 chr6 81747377 81747722 -107531832 - MLT1A1 LTR MaLR -4 361 1 983 155 58 53 chr6 81748226 81748452 -107531102 - MER50 LTR ERV1 0 734 508 495 165 21 10 chr6 81748515 81748612 -107530942 + MER4A LTR ERV1 1 98 -566 1728 118 17 25 chr6 81748612 81748959 -107530595 + MER4A LTR ERV1 261 664 0 468 206 149 14 chr6 81749197 81749338 -107530216 - MER50 LTR ERV1 -566 168 9 216 259 86 80 chr6 81749548 81749710 -107529844 + L3 LINE CR1 272 434 -1143 1640 206 72 35 chr6 81749814 81750303 -107529251 + MER84 LTR ERV1 1 507 0 399 255 174 19 chr6 81750796 81750957 -107528597 + MIR SINE MIR 28 213 -49 387 362 37 0 chr6 81751013 81751176 -107528378 + L3 LINE CR1 451 619 -958 518 307 33 92 chr6 81751588 81752067 -107527487 + L2 LINE L2 301 751 -2563 986 228 77 105 chr6 81752333 81752408 -107527146 - MLT1D LTR MaLR 0 505 429 1826 134 48 24 chr6 81752408 81752699 -107526855 - AluJo SINE Alu -14 298 1 986 228 77 105 chr6 81752699 81752884 -107526670 - MLT1D LTR MaLR -76 429 240 2769 125 16 23 chr6 81752884 81753271 -107526283 + MSTA LTR MaLR 1 386 -42 1572 181 0 95 chr6 81753271 81753608 -107525946 - AluJb SINE Alu -7 305 1 2769 125 16 23 chr6 81753608 81753651 -107525903 + MSTA LTR MaLR 386 428 0 986 228 77 105 chr6 81753651 81753893 -107525661 - MLT1D LTR MaLR -265 240 16 360 284 119 116 chr6 81754540 81755077 -107524477 + L2 LINE L2 2736 3272 0 602 308 65 29 chr6 81755134 81755410 -107524144 + L3 LINE CR1 993 1278 -299 296 306 147 18 chr6 81755425 81755595 -107523959 + L3 LINE CR1 1382 1573 -4 21 0 0 0 chr6 81756358 81756379 -107523175 + AT_rich Low_complexity Low_complexity 1 21 0 319 328 76 18 chr6 81756819 81756990 -107522564 + MIR SINE MIR 25 205 -57 281 242 132 0 chr6 81757374 81757465 -107522089 + L2 LINE L2 3164 3266 -47 2945 82 33 0 chr6 81757518 81757943 -107521611 + L1MA1 LINE L1 5864 6302 0 589 300 86 32 chr6 81758292 81758512 -107521042 - MIR SINE MIR -9 253 22 2175 128 0 0 chr6 81759369 81759666 -107519888 + AluSx SINE Alu 1 297 -15 748 267 127 39 chr6 81760600 81761244 -107518310 + HAL1b LINE L1 191 891 -457 474 298 53 0 chr6 81761422 81761593 -107517961 + L1M4 LINE L1 3956 4135 -2011 7749 190 133 5 chr6 81761715 81763707 -107515847 + L1PBa LINE L1 6 2253 -4610 * 12647 204 14 3 chr6 81763705 81766620 -107512934 + L1 LINE L1 2968 5913 -949 2548 230 34 18 chr6 81766625 81767239 -107512315 - MER45B DNA AcHobo -416 624 1 213 65 0 0 chr6 81767305 81767336 -107512218 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 376 255 176 13 chr6 81767963 81768116 -107511438 + MIR SINE MIR 85 262 0 628 197 29 27 chr6 81768950 81769284 -107510270 + L1M4 LINE L1 2859 3317 -2829 8921 159 35 8 chr6 81769291 81769794 -107509760 - L1MA6 LINE L1 -3 6297 5809 402 74 0 0 chr6 81769794 81769848 -107509706 + (TG)n Simple_repeat Simple_repeat 2 55 0 8921 159 35 8 chr6 81769848 81770505 -107509049 - L1MA6 LINE L1 -491 5809 5171 902 66 8 0 chr6 81770505 81770627 -107508927 - L1PB1 LINE L1 0 6151 6029 8921 159 35 8 chr6 81770627 81772118 -107507436 - L1MA6 LINE L1 -1129 5171 3583 282 250 12 0 chr6 81772211 81772295 -107507259 + L1M4 LINE L1 3455 3539 -2607 365 212 35 133 chr6 81772301 81772527 -107507027 + L1M4 LINE L1 4672 4875 -1271 647 211 113 38 chr6 81772534 81772719 -107506835 - MIR SINE MIR -63 199 1 24 32 0 0 chr6 81772860 81772891 -107506663 + AT_rich Low_complexity Low_complexity 1 31 0 197 65 32 0 chr6 81772948 81772979 -107506575 + (TTG)n Simple_repeat Simple_repeat 2 33 0 854 129 0 0 chr6 81772984 81773100 -107506454 - AluJo SINE Alu -30 282 167 605 191 9 9 chr6 81773103 81773213 -107506341 - AluJo SINE Alu -201 111 2 612 246 23 23 chr6 81773352 81773527 -107506027 - MER97b DNA MER1_type? -877 176 2 23 54 0 0 chr6 81773701 81773738 -107505816 + AT_rich Low_complexity Low_complexity 1 37 0 394 224 140 0 chr6 81773788 81773895 -107505659 - MIR SINE MIR -24 238 117 194 253 126 11 chr6 81773901 81773988 -107505566 + MIR SINE MIR 141 237 -25 21 36 0 0 chr6 81774056 81774084 -107505470 + AT_rich Low_complexity Low_complexity 1 28 0 398 299 102 7 chr6 81774163 81774310 -107505244 - MIR SINE MIR -88 174 14 542 172 234 21 chr6 81774343 81774488 -107505066 + MER5A DNA MER1_type 14 189 0 183 80 0 0 chr6 81775038 81775063 -107504491 + (T)n Simple_repeat Simple_repeat 1 25 0 398 325 152 25 chr6 81775069 81775711 -107503843 + L2 LINE L2 2328 3051 -221 877 184 46 0 chr6 81775728 81775902 -107503652 + MER5A DNA MER1_type 8 189 0 1452 138 59 50 chr6 81776087 81776407 -107503147 + L1MA9 LINE L1 5989 6311 -1 285 51 0 0 chr6 81776763 81776802 -107502752 + (CA)n Simple_repeat Simple_repeat 1 39 0 198 189 297 27 chr6 81777062 81777136 -107502418 + L2 LINE L2 3210 3303 -10 21 0 0 0 chr6 81778315 81778336 -107501218 + AT_rich Low_complexity Low_complexity 1 21 0 336 24 0 0 chr6 81779079 81779120 -107500434 + (TG)n Simple_repeat Simple_repeat 1 41 0 213 224 0 17 chr6 81779124 81779182 -107500372 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 4418 252 21 57 chr6 81779500 81781005 -107498549 + L1MA9 LINE L1 405 1855 -5711 11536 214 40 17 chr6 81781018 81783072 -107496482 + L1MA9 LINE L1 3103 5107 -2624 1849 135 31 55 chr6 81783072 81783456 -107496098 - THE1C LTR MaLR 0 375 1 11536 214 40 17 chr6 81783456 81784274 -107495280 + L1MA9 LINE L1 5107 5904 -1827 2282 165 18 15 chr6 81784274 81784667 -107494887 + MSTD LTR MaLR 1 394 -2 11536 214 40 17 chr6 81784667 81786281 -107493273 + L1MA9 LINE L1 5904 7695 -36 31531 42 5 6 chr6 81786503 81790622 -107488932 - L1P LINE L1 -2026 4120 9 1157 146 52 34 chr6 81790644 81790911 -107488643 - L1MA8 LINE L1 -30 6261 5990 327 338 86 44 chr6 81791969 81792374 -107487180 - L2 LINE L2 -7 3265 2844 554 279 95 11 chr6 81792746 81792925 -107486629 + L2 LINE L2 3120 3313 0 1717 130 0 0 chr6 81793838 81794069 -107485485 - AluSx SINE Alu -81 231 1 320 241 35 0 chr6 81794704 81794791 -107484763 - Charlie2 DNA MER1_type 0 2862 2773 27714 29 3 0 chr6 81794810 81799055 -107480499 - L1PA3 LINE L1 -3 6152 1895 1561 210 129 61 chr6 81799065 81799260 -107480294 - Charlie2 DNA MER1_type -99 2763 2583 1704 161 0 28 chr6 81799260 81799551 -107480003 - AluJo SINE Alu -29 283 1 1561 210 129 61 chr6 81799551 81800206 -107479348 - Charlie2 DNA MER1_type -279 2583 1855 443 247 54 107 chr6 81800214 81800550 -107479004 - Charlie2 DNA MER1_type -2464 318 1 26 64 0 0 chr6 81801280 81801327 -107478227 + AT_rich Low_complexity Low_complexity 1 47 0 1739 191 10 0 chr6 81801616 81801914 -107477640 + AluJo SINE Alu 1 301 -11 3164 164 89 44 chr6 81802096 81803185 -107476369 - L1MB3 LINE L1 -200 5983 4839 654 262 12 12 chr6 81803191 81803359 -107476195 - LTR8 LTR ERV1 -2 689 522 30962 101 21 24 chr6 81803369 81809535 -107470019 - L1PA5 LINE L1 0 6154 12 3186 139 30 9 chr6 81809545 81810113 -107469441 - LTR8A LTR ERV1 -147 580 1 1661 194 33 12 chr6 81810115 81810537 -107469017 - L1MB3 LINE L1 -1311 4835 4405 604 194 93 0 chr6 81810574 81810713 -107468841 - L1PB4 LINE L1 -3 6153 6002 1302 201 63 15 chr6 81811049 81811318 -107468236 - AluJo SINE Alu -28 284 3 607 285 41 27 chr6 81811624 81811845 -107467709 - MIR SINE MIR -11 251 28 1197 243 104 21 chr6 81811862 81812586 -107466968 - L1MB3 LINE L1 -2974 3172 2389 4295 192 67 28 chr6 81812588 81814150 -107465404 + L1PA15 LINE L1 1242 2869 -3928 33576 101 12 13 chr6 81814161 81819923 -107459631 + L1PA6 LINE L1 11 5768 -386 12055 187 27 24 chr6 81820164 81820181 -107459373 + L1PA15 LINE L1 2872 2887 -3929 2978 84 0 5 chr6 81820181 81820584 -107458970 + L1PA6 LINE L1 5754 6154 0 12055 187 27 24 chr6 81820584 81824538 -107455016 + L1PA15 LINE L1 2887 6813 -3 2436 94 0 0 chr6 81824542 81824851 -107454703 + AluY SINE Alu 1 309 -2 490 266 73 23 chr6 81825039 81825216 -107454338 - MIR SINE MIR -3 259 74 388 236 113 15 chr6 81825247 81825442 -107454112 - L1M4 LINE L1 -3741 2405 2192 236 180 0 0 chr6 81825546 81825596 -107453958 + (TG)n Simple_repeat Simple_repeat 1 50 0 319 224 12 0 chr6 81826729 81826814 -107452740 - MLT1L LTR MaLR 0 615 530 454 268 22 44 chr6 81827001 81827184 -107452370 - MLT1J2 LTR MaLR -241 209 31 733 265 182 32 chr6 81827202 81827663 -107451891 - MLT1L LTR MaLR -85 530 1 1860 147 10 14 chr6 81828077 81828369 -107451185 + AluJb SINE Alu 1 291 -21 305 45 0 23 chr6 81828785 81828829 -107450725 + (CA)n Simple_repeat Simple_repeat 2 44 0 578 300 34 15 chr6 81829670 81829937 -107449617 - L1MC4 LINE L1 -537 7505 7234 912 235 47 50 chr6 81829964 81830305 -107449249 - L1MC4 LINE L1 -980 7062 6723 2160 227 37 54 chr6 81830479 81831542 -107448012 - L1ME1 LINE L1 -182 5984 4958 3293 135 64 86 chr6 81831567 81832366 -107447188 - L1MA8 LINE L1 -4 6287 5507 889 224 9 9 chr6 81832374 81832584 -107446970 - L1ME1 LINE L1 -1198 4948 4739 363 259 135 18 chr6 81832786 81832956 -107446598 - Charlie8 DNA MER1_type -1857 560 371 1087 128 60 72 chr6 81833147 81833382 -107446172 - L1MC3 LINE L1 -827 6958 6727 604 175 0 0 chr6 81833385 81833488 -107446066 - L1MC3 LINE L1 -446 7339 7237 995 155 130 5 chr6 81834105 81834305 -107445249 + AluJo SINE Alu 72 296 -16 1057 170 0 22 chr6 81835724 81835906 -107443648 - AluJb SINE Alu -2 310 133 2892 228 51 46 chr6 81836438 81837024 -107442530 + L1ME1 LINE L1 4464 5046 -1120 180 0 0 0 chr6 81837024 81837044 -107442510 + (TA)n Simple_repeat Simple_repeat 2 21 0 1487 105 0 10 chr6 81837054 81837254 -107442300 - AluSq SINE Alu -109 204 7 2892 228 51 46 chr6 81837254 81838327 -107441227 + L1ME1 LINE L1 5054 6138 -28 1228 249 116 44 chr6 81838327 81838846 -107440708 - MER68 LTR ERV1 -4 558 3 2892 228 51 46 chr6 81838846 81838876 -107440678 + L1ME1 LINE L1 6138 6166 0 1236 118 6 0 chr6 81839041 81839219 -107440335 + AluSg/x SINE Alu 130 308 -2 580 294 36 26 chr6 81839490 81839684 -107439870 + MER91A DNA MER1_type 1 196 0 185 309 74 0 chr6 81840841 81840922 -107438632 - L2 LINE L2 -27 3245 3159 217 309 48 0 chr6 81841996 81842080 -107437474 + MIR3 SINE MIR 94 181 -27 333 0 0 0 chr6 81842929 81842966 -107436588 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 71 0 0 chr6 81843370 81843412 -107436142 + AT_rich Low_complexity Low_complexity 1 42 0 810 231 73 58 chr6 81843912 81844262 -107435292 - MER21B LTR ERV1 -11 594 422 2146 115 10 0 chr6 81844633 81844928 -107434626 + AluSx SINE Alu 1 298 -14 200 233 0 0 chr6 81845069 81845112 -107434442 + L3 LINE CR1 1532 1574 -3 263 300 100 70 chr6 81846590 81847168 -107432386 + L2 LINE L2 2627 3219 -53 322 336 30 60 chr6 81848324 81848559 -107430995 - MIR SINE MIR -14 248 21 270 301 50 117 chr6 81849948 81850307 -107429247 + L2 LINE L2 2938 3272 0 210 37 0 0 chr6 81850592 81850619 -107428935 + (T)n Simple_repeat Simple_repeat 1 27 0 3939 163 55 20 chr6 81850962 81851793 -107427761 - L1MB4 LINE L1 -1 6179 5320 515 179 51 0 chr6 81851817 81851934 -107427620 - MLT1B LTR MaLR -46 344 222 932 217 24 48 chr6 81851984 81852187 -107427367 - L1MB4 LINE L1 -815 5331 5138 2393 94 0 0 chr6 81852187 81852494 -107427060 - AluY SINE Alu -3 308 2 932 217 24 48 chr6 81852494 81852622 -107426932 - L1MB4 LINE L1 -1008 5138 5008 2042 127 0 54 chr6 81853746 81854060 -107425494 + AluSx SINE Alu 1 297 -15 894 154 70 6 chr6 81854060 81854216 -107425338 + AluJo/FRAM SINE Alu 134 299 -13 844 289 10 0 chr6 81854260 81854464 -107425090 + MIR SINE MIR 43 248 -14 234 62 0 0 chr6 81854607 81854639 -107424915 + (CCCCCA)n Simple_repeat Simple_repeat 2 33 0 261 0 0 0 chr6 81855205 81855234 -107424320 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 330 299 35 23 chr6 81855319 81855493 -107424061 + HAL1b LINE L1 388 563 -785 305 237 109 33 chr6 81856429 81856640 -107422914 + L1M4 LINE L1 2518 2744 -3402 182 366 24 78 chr6 81857758 81857963 -107421591 + L2 LINE L2 3006 3199 -73 518 284 96 18 chr6 81858100 81858318 -107421236 - MIR SINE MIR -20 242 8 6205 225 68 34 chr6 81859552 81864046 -107415508 + L1M4 LINE L1 2 4752 -1892 228 35 0 0 chr6 81864054 81864083 -107415471 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6594 19 0 0 chr6 81864160 81864918 -107414636 - L1PA4 LINE L1 0 6155 5398 1912 173 115 99 chr6 81864937 81865401 -107414153 + L1M4 LINE L1 4768 5246 -1398 656 183 0 9 chr6 81865401 81865516 -107414038 + FLAM_A SINE Alu 2 115 -18 1912 173 115 99 chr6 81865516 81865687 -107413867 + L1M4 LINE L1 5246 5413 -1231 297 225 0 12 chr6 81865696 81865776 -107413778 + L1MB7 LINE L1 6091 6169 -15 4999 215 47 37 chr6 81866351 81867940 -107411614 - L1MEc LINE L1 -1952 4263 2660 626 163 30 0 chr6 81868063 81868198 -107411356 - L1MEc LINE L1 -5230 1166 1028 200 230 40 14 chr6 81868252 81868326 -107411228 + (TA)n Simple_repeat Simple_repeat 2 77 0 1901 248 85 20 chr6 81868327 81868984 -107410570 - L1MEc LINE L1 -5652 744 45 1091 155 83 0 chr6 81869086 81869279 -107410275 + MER2 DNA MER2_type 2 210 -135 2039 102 35 0 chr6 81869299 81869582 -107409972 + AluSq SINE Alu 3 295 -18 266 246 66 0 chr6 81869629 81869690 -107409864 + MER2 DNA MER2_type 281 345 0 198 0 0 0 chr6 81870631 81870653 -107408901 + (A)n Simple_repeat Simple_repeat 1 22 0 217 313 107 36 chr6 81871082 81871194 -107408360 - MIR SINE MIR -73 135 16 1991 135 0 26 chr6 81871724 81872027 -107407527 - AluJo SINE Alu -17 295 1 252 0 0 0 chr6 81876399 81876427 -107403127 + (A)n Simple_repeat Simple_repeat 1 28 0 318 261 90 9 chr6 81878930 81879086 -107400468 + MIR SINE MIR 2 172 -36 549 0 0 0 chr6 81879603 81879664 -107399890 + (TATATG)n Simple_repeat Simple_repeat 1 61 0 2284 94 0 3 chr6 81880078 81880375 -107399179 - AluSx SINE Alu -16 296 1 875 209 0 0 chr6 81881751 81881914 -107397640 - MER58A DNA MER1_type -32 192 30 510 177 52 0 chr6 81882482 81882578 -107396976 - MIR SINE MIR -14 248 148 37 69 0 0 chr6 81884134 81884206 -107395348 + AT_rich Low_complexity Low_complexity 1 72 0 495 144 81 18 chr6 81884889 81885000 -107394554 + L1MB3 LINE L1 6064 6181 -2 25 31 0 0 chr6 81885276 81885308 -107394246 + AT_rich Low_complexity Low_complexity 1 32 0 222 336 19 28 chr6 81886106 81886213 -107393341 - MIR SINE MIR -82 126 21 220 195 0 0 chr6 81886781 81886822 -107392732 + (CA)n Simple_repeat Simple_repeat 1 41 0 192 265 189 25 chr6 81888525 81888721 -107390833 + L2 LINE L2 1875 2102 -1212 183 205 0 0 chr6 81890357 81890396 -107389158 + (CA)n Simple_repeat Simple_repeat 1 39 0 941 268 21 8 chr6 81891110 81891345 -107388209 + MIR SINE MIR 1 238 -24 21 36 0 0 chr6 81891353 81891381 -107388173 + AT_rich Low_complexity Low_complexity 1 28 0 267 258 30 0 chr6 81891695 81891761 -107387793 + MLT1J LTR MaLR 95 162 -349 * 447 306 128 31 chr6 81891740 81892093 -107387461 + MLT1L LTR MaLR 206 592 -23 193 286 48 0 chr6 81893454 81893517 -107386037 + L3 LINE CR1 1509 1574 -3 711 241 24 53 chr6 81894081 81894288 -107385266 + MER58A DNA MER1_type 24 224 0 513 294 28 23 chr6 81895010 81895187 -107384367 + L2 LINE L2 207 384 -2930 317 191 36 118 chr6 81895219 81895329 -107384225 + MLT1I LTR MaLR 289 543 -6 254 264 110 11 chr6 81895525 81895616 -107383938 + MLT1F1 LTR MaLR 452 551 -16 455 251 80 18 chr6 81895636 81895799 -107383755 + L2 LINE L2 1531 1703 -1611 1117 262 93 13 chr6 81895804 81896422 -107383132 + L2 LINE L2 2638 3313 0 21 0 0 0 chr6 81897260 81897281 -107382273 + AT_rich Low_complexity Low_complexity 1 21 0 337 100 83 33 chr6 81898110 81898170 -107381384 + THE1B LTR MaLR 1 63 -301 1961 118 97 24 chr6 81898244 81898583 -107380971 + THE1B LTR MaLR 1 364 0 22 35 0 0 chr6 81898728 81898757 -107380797 + AT_rich Low_complexity Low_complexity 1 29 0 1935 155 0 16 chr6 81898908 81899225 -107380329 + AluJo SINE Alu 1 312 0 2474 68 0 7 chr6 81899438 81899746 -107379808 - AluY SINE Alu -5 306 1 221 325 72 0 chr6 81900177 81900260 -107379294 - MIR3 SINE MIR -7 201 113 307 279 43 36 chr6 81900846 81900986 -107378568 - MER112 DNA MER1_type -10 250 110 11840 112 20 57 chr6 81901139 81903661 -107375893 - L1P3 LINE L1 -3935 2526 1 309 309 84 22 chr6 81904107 81904276 -107375278 - MIR SINE MIR -64 198 16 382 317 145 13 chr6 81904421 81904648 -107374906 + MIR SINE MIR 6 262 0 21 0 0 0 chr6 81904676 81904697 -107374857 + AT_rich Low_complexity Low_complexity 1 21 0 214 279 147 0 chr6 81905777 81905845 -107373709 + MIR3 SINE MIR 107 184 -24 205 274 0 71 chr6 81905885 81905969 -107373585 - MIR SINE MIR -64 198 121 570 158 0 40 chr6 81906394 81906495 -107373059 + FLAM_A SINE Alu 4 100 -42 410 182 0 13 chr6 81906694 81906771 -107372783 + MLT1F1 LTR MaLR 32 107 -460 3017 98 60 23 chr6 81907023 81907502 -107372052 + LOR1a LTR ERV1 1 497 0 305 259 95 116 chr6 81907530 81907866 -107371688 + MARNA DNA Mariner 33 361 -225 2305 92 7 0 chr6 81908014 81908317 -107371237 - AluY SINE Alu -6 305 1 233 262 68 48 chr6 81908389 81908492 -107371062 - MIR SINE MIR -62 200 96 929 106 15 0 chr6 81908602 81908734 -107370820 - THE1C LTR MaLR 0 375 242 7173 133 14 41 chr6 81908840 81910045 -107369509 - THE1C-int LTR MaLR -400 1180 8 1669 145 110 23 chr6 81910053 81910398 -107369156 - THE1C LTR MaLR 0 375 1 324 0 0 0 chr6 81910495 81910531 -107369023 + (TA)n Simple_repeat Simple_repeat 1 36 0 306 0 0 0 chr6 81910530 81910564 -107368990 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 213 139 0 23 chr6 81912156 81912199 -107367355 + (TC)n Simple_repeat Simple_repeat 1 42 0 23 33 0 0 chr6 81912806 81912836 -107366718 + AT_rich Low_complexity Low_complexity 1 30 0 2405 97 27 48 chr6 81913856 81914063 -107365491 - THE1B LTR MaLR 0 364 167 2276 110 3 0 chr6 81914063 81914364 -107365190 + AluSq SINE Alu 3 304 -9 2405 97 27 48 chr6 81914364 81914528 -107365026 - THE1B LTR MaLR -197 167 1 23 0 0 0 chr6 81914651 81914674 -107364880 + AT_rich Low_complexity Low_complexity 1 23 0 2064 131 137 13 chr6 81915416 81915797 -107363757 + MSTA LTR MaLR 1 428 0 482 312 14 0 chr6 81916067 81916205 -107363349 + MIR3 SINE MIR 34 173 -35 230 283 11 54 chr6 81916685 81916777 -107362777 - L2 LINE L2 -4 3268 3181 2773 136 6 64 chr6 81916780 81917294 -107362260 + MER31A LTR ERV1 1 484 -1 1380 183 15 127 chr6 81917588 81917999 -107361555 - MLT1A1 LTR MaLR 0 365 1 711 237 66 24 chr6 81919377 81919588 -107359966 + MLT1G1 LTR MaLR 1 220 -375 249 83 0 0 chr6 81919596 81919632 -107359922 + (TCCCC)n Simple_repeat Simple_repeat 5 40 0 1822 254 32 45 chr6 82020490 82021046 -107258508 - MLT1H1 LTR MaLR -2 553 5 2112 93 0 4 chr6 82021298 82021578 -107257976 - AluSx SINE Alu -33 279 1 501 250 191 0 chr6 82021635 82021787 -107257767 - MIR3 SINE MIR -1 207 27 192 200 22 22 chr6 82021972 82022017 -107257537 - L2 LINE L2 -8 3305 3261 1052 89 7 0 chr6 82022167 82022301 -107257253 + AluSg/x SINE Alu 156 293 -19 601 12 37 0 chr6 82022301 82022382 -107257172 + (CAGAA)n Simple_repeat Simple_repeat 2 85 0 1052 89 7 0 chr6 82022382 82022393 -107257161 + AluSg/x SINE Alu 293 302 -10 7537 26 1 0 chr6 82023588 82025167 -107254387 - L1PA4 LINE L1 -3 6152 4573 * 15205 25 0 0 chr6 82025154 82027721 -107251833 + L1PA4 LINE L1 3587 6155 0 813 82 0 0 chr6 82027734 82027844 -107251710 + L1MA4 LINE L1 5833 5942 -358 26 30 0 0 chr6 82028109 82028142 -107251412 + GC_rich Low_complexity Low_complexity 1 33 0 340 281 104 95 chr6 82028212 82028770 -107250784 + L1M2 LINE L1 528 1090 -5759 288 0 0 0 chr6 82028924 82028956 -107250598 + (A)n Simple_repeat Simple_repeat 1 32 0 260 224 208 48 chr6 82029492 82029617 -107249937 - MIR SINE MIR -33 229 85 299 296 31 10 chr6 82030061 82030159 -107249395 + L2 LINE L2 2487 2586 -728 1837 257 112 44 chr6 82030161 82031026 -107248528 - L2 LINE L2 -873 2441 1518 344 298 80 46 chr6 82031045 82031196 -107248358 - MIR SINE MIR -78 184 29 264 326 11 11 chr6 82033219 82033311 -107246243 - MIR3 SINE MIR -5 203 112 22 35 0 0 chr6 82034313 82034342 -107245212 + AT_rich Low_complexity Low_complexity 1 29 0 228 67 0 0 chr6 82034502 82034532 -107245022 + (CA)n Simple_repeat Simple_repeat 2 31 0 276 298 167 40 chr6 82034873 82035089 -107244465 + MIR SINE MIR 3 243 -19 307 333 10 0 chr6 82035092 82035191 -107244363 + CT-rich Low_complexity Low_complexity 5 104 0 1008 207 16 0 chr6 82035250 82035443 -107244111 - MER58A DNA MER1_type -2 222 27 27 0 0 0 chr6 82035842 82035869 -107243685 + AT_rich Low_complexity Low_complexity 1 27 0 191 86 0 29 chr6 82036351 82036386 -107243168 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr6 82037160 82037181 -107242373 + AT_rich Low_complexity Low_complexity 1 21 0 1849 31 0 0 chr6 82037181 82037403 -107242151 - L1PA4 LINE L1 -3 6152 5931 724 235 189 9 chr6 82039983 82040200 -107239354 - MIR SINE MIR 0 262 7 2295 75 14 0 chr6 82041833 82042145 -107237409 - AluSg SINE Alu 0 316 1 1620 148 138 16 chr6 82042390 82042695 -107236859 - MER2 DNA MER2_type -1 343 2 22 0 0 0 chr6 82046880 82046902 -107232652 + AT_rich Low_complexity Low_complexity 1 22 0 181 354 79 51 chr6 82049797 82050012 -107229542 + MIR SINE MIR 21 241 -21 2378 83 0 7 chr6 82050819 82051121 -107228433 + AluSx SINE Alu 1 300 -12 186 340 66 9 chr6 82051213 82051319 -107228235 - MIR SINE MIR -115 147 36 286 299 196 14 chr6 82051684 82051898 -107227656 + L2 LINE L2 2397 2649 -665 211 267 117 0 chr6 82051937 82051997 -107227557 + L2 LINE L2 3242 3308 -5 268 286 59 42 chr6 82053548 82053667 -107225887 + MIR SINE MIR 34 154 -108 201 273 0 0 chr6 82053800 82053844 -107225710 + A-rich Low_complexity Low_complexity 4 47 0 29 47 0 0 chr6 82053987 82054030 -107225524 + AT_rich Low_complexity Low_complexity 1 43 0 234 0 0 0 chr6 82054652 82054678 -107224876 + (TA)n Simple_repeat Simple_repeat 2 27 0 2286 207 108 55 chr6 82054849 82055642 -107223912 + L1ME2 LINE L1 4408 5242 -904 300 53 0 0 chr6 82055644 82055682 -107223872 + (CA)n Simple_repeat Simple_repeat 2 39 0 322 287 23 0 chr6 82055682 82055769 -107223785 - L1MC4 LINE L1 -1339 6703 6615 305 282 47 0 chr6 82055781 82055866 -107223688 - L1MC4 LINE L1 -1340 6702 6614 * 329 311 0 0 chr6 82055802 82055892 -107223662 + L1MC4 LINE L1 6614 6703 -1339 204 158 0 0 chr6 82055893 82055931 -107223623 + (TA)n Simple_repeat Simple_repeat 1 38 0 2880 207 50 73 chr6 82055953 82056861 -107222693 + L1ME2 LINE L1 5266 6152 -12 9021 27 16 2 chr6 82057076 82058915 -107220639 + L1PA3 LINE L1 4300 6155 0 288 267 75 25 chr6 82060547 82060667 -107218887 + MLT1J LTR MaLR 74 199 -312 862 213 101 19 chr6 82060758 82060965 -107218589 - MER58A DNA MER1_type 0 224 1 230 324 41 21 chr6 82060984 82061129 -107218425 + MLT1J2 LTR MaLR 284 431 -19 240 214 183 46 chr6 82061611 82061742 -107217812 - L1ME4a LINE L1 -3 6118 5970 277 261 102 23 chr6 82063560 82063648 -107215906 + MER91A DNA MER1_type 93 187 -9 2235 245 73 18 chr6 82064580 82065274 -107214280 + L1ME3A LINE L1 5440 6168 -2 275 196 0 0 chr6 82065816 82065862 -107213692 - MIR SINE MIR -8 254 209 532 287 55 0 chr6 82066034 82066198 -107213356 - MIR SINE MIR -88 174 2 2143 108 3 17 chr6 82067875 82068172 -107211382 + AluSx SINE Alu 1 293 -19 978 311 108 23 chr6 82068267 82069082 -107210472 - L2 LINE L2 -34 3279 2393 306 355 16 0 chr6 82069200 82069324 -107210230 - MIR SINE MIR -125 137 12 373 245 0 38 chr6 82070501 82070607 -107208947 - MIR SINE MIR -39 223 122 180 0 0 0 chr6 82072818 82072838 -107206716 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 359 236 57 49 chr6 82073945 82074068 -107205486 + L2 LINE L2 3189 3312 -1 6039 101 28 6 chr6 82075382 82077181 -107202373 + L1PA11 LINE L1 4355 6173 -1 757 160 15 0 chr6 82079107 82079238 -107200316 + AluJb SINE Alu 1 133 -179 254 225 54 0 chr6 82079442 82079571 -107199983 + (TA)n Simple_repeat Simple_repeat 2 137 0 230 250 164 48 chr6 82080407 82080511 -107199043 - MIR SINE MIR -66 142 27 342 319 88 22 chr6 82080662 82080844 -107198710 - L3 LINE CR1 -1300 277 84 333 0 0 0 chr6 82081315 82081352 -107198202 + (TG)n Simple_repeat Simple_repeat 2 38 0 566 211 8 16 chr6 82083214 82083342 -107196212 - LTR16B LTR ERVL -2 462 336 457 256 14 90 chr6 82083352 82083563 -107195991 - LTR16B LTR ERVL -267 197 3 605 255 34 0 chr6 82084316 82084465 -107195089 - L2 LINE L2 0 3313 3160 417 274 94 99 chr6 82086247 82086682 -107192872 - L2 LINE L2 -33 3239 2807 294 217 0 0 chr6 82087871 82087931 -107191623 - FLAM_A SINE Alu -2 131 72 241 237 17 17 chr6 82088211 82088270 -107191284 - MIR SINE MIR -63 145 87 198 171 0 0 chr6 82088403 82088444 -107191110 + (ATG)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr6 82089259 82089281 -107190273 + AT_rich Low_complexity Low_complexity 1 22 0 3160 230 81 94 chr6 82091213 82091887 -107187667 - L1MC4a LINE L1 -1030 6778 6096 2391 83 0 0 chr6 82091887 82092187 -107187367 + AluY SINE Alu 1 300 -11 3160 230 81 94 chr6 82092187 82092993 -107186561 - L1MC4a LINE L1 -1712 6096 5328 674 263 72 53 chr6 82093057 82093528 -107186026 - L1MC4a LINE L1 -894 5252 4773 23 54 0 0 chr6 82093650 82093687 -107185867 + AT_rich Low_complexity Low_complexity 1 37 0 31727 102 15 59 chr6 82094737 82101161 -107178393 - L1PA7 LINE L1 -15 6139 12 265 339 111 19 chr6 82101498 82101812 -107177742 - L1 LINE L1 -1131 5015 4672 2084 129 39 41 chr6 82101862 82102226 -107177328 + THE1B LTR MaLR 2 364 0 353 190 40 40 chr6 82102349 82102449 -107177105 - MLT1I LTR MaLR -78 546 447 2070 142 0 0 chr6 82102561 82102864 -107176690 - AluSg SINE Alu -1 309 7 299 248 113 45 chr6 82102881 82103014 -107176540 - MIR SINE MIR -66 196 55 417 250 83 25 chr6 82103086 82103206 -107176348 - L3 LINE CR1 -114 1463 1337 636 191 0 0 chr6 82103315 82103420 -107176134 - FAM SINE Alu -18 167 63 721 344 71 12 chr6 82103655 82104062 -107175492 - L3 LINE CR1 -593 984 554 331 235 0 0 chr6 82104998 82105066 -107174488 + L1MD2 LINE L1 6065 6132 -227 351 0 0 0 chr6 82105066 82105105 -107174449 + (CA)n Simple_repeat Simple_repeat 2 40 0 656 209 7 26 chr6 82105105 82105258 -107174296 + L1MD2 LINE L1 6194 6343 -16 2401 148 35 37 chr6 82105871 82106332 -107173222 + LOR1b LTR ERV1 1 460 -1 480 35 0 0 chr6 82106332 82106390 -107173164 + (TA)n Simple_repeat Simple_repeat 2 59 0 427 263 187 14 chr6 82107002 82107211 -107172343 - MLT1I LTR MaLR -99 310 66 1705 151 120 17 chr6 82107234 82107591 -107171963 + MER61C LTR ERV1 41 434 0 192 329 53 0 chr6 82107654 82107730 -107171824 + MIR SINE MIR 100 179 -83 684 254 103 9 chr6 82107742 82107966 -107171588 + MIR SINE MIR 15 259 -3 2288 85 0 32 chr6 82108468 82108784 -107170770 - AluY SINE Alu -5 306 1 584 186 18 35 chr6 82109571 82109684 -107169870 - AluJ SINE Alu -8 304 194 863 148 7 7 chr6 82109684 82109826 -107169728 - AluJ SINE Alu -168 144 3 197 239 60 120 chr6 82110070 82110187 -107169367 + MIR SINE MIR 21 130 -78 245 170 0 0 chr6 82110576 82110623 -107168931 - L1ME3A LINE L1 -5 6165 6119 2494 238 63 9 chr6 82110637 82111556 -107167998 - L1ME3A LINE L1 -210 5960 4991 1532 235 45 29 chr6 82111597 82112107 -107167447 - L1ME3A LINE L1 -1329 4817 4300 2278 97 0 0 chr6 82112199 82112499 -107167055 + AluSq SINE Alu 1 300 -13 8218 132 14 1 chr6 82113009 82114293 -107165261 + HSMAR2 DNA Mariner 1 1301 -1 984 108 0 0 chr6 82114293 82114520 -107165034 + (TA)n Simple_repeat Simple_repeat 1 227 0 23 0 0 0 chr6 82114520 82114543 -107165011 + AT_rich Low_complexity Low_complexity 1 23 0 540 151 104 0 chr6 82114809 82114915 -107164639 + L2 LINE L2 3197 3313 0 216 0 0 0 chr6 82117304 82117328 -107162226 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 277 361 68 23 chr6 82117328 82117452 -107162102 - L2 LINE L2 -12 3260 3128 252 0 0 0 chr6 82118646 82118674 -107160880 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 23 54 0 0 chr6 82119482 82119519 -107160035 + AT_rich Low_complexity Low_complexity 1 37 0 2476 64 0 0 chr6 82119646 82119943 -107159611 - AluY SINE Alu -14 297 1 410 180 6 55 chr6 82120937 82121120 -107158434 + (TA)n Simple_repeat Simple_repeat 2 175 0 285 208 2 36 chr6 82121138 82121718 -107157836 + (TA)n Simple_repeat Simple_repeat 1 560 0 258 207 90 117 chr6 82122584 82122729 -107156825 + MIR SINE MIR 32 172 -90 2166 117 3 32 chr6 82122781 82123124 -107156430 - MER1B DNA MER1_type -4 333 1 875 277 50 39 chr6 82124004 82124487 -107155067 + L1MEc LINE L1 1859 2346 -4050 259 204 19 0 chr6 82124975 82125029 -107154525 - MIR SINE MIR -2 260 206 23 0 0 0 chr6 82127150 82127173 -107152381 + AT_rich Low_complexity Low_complexity 1 23 0 334 282 113 32 chr6 82127209 82127333 -107152221 + MIR SINE MIR 34 167 -95 543 246 143 57 chr6 82127403 82127683 -107151871 - L2 LINE L2 -35 3278 2975 313 350 0 0 chr6 82128793 82128890 -107150664 + L2 LINE L2 3216 3312 -1 451 249 101 137 chr6 82128994 82129170 -107150384 + L3 LINE CR1 366 547 -1030 2377 87 0 13 chr6 82129170 82129482 -107150072 + AluSg SINE Alu 1 308 -2 451 249 101 137 chr6 82129482 82129939 -107149615 + L3 LINE CR1 547 976 -601 219 314 78 69 chr6 82130008 82130110 -107149444 - L2 LINE L2 -10 3262 3160 261 0 0 0 chr6 82130226 82130255 -107149299 + (A)n Simple_repeat Simple_repeat 1 29 0 210 312 122 59 chr6 82130888 82131125 -107148429 + L2 LINE L2 1155 1406 -1908 229 186 0 0 chr6 82133987 82134030 -107145524 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 808 208 56 11 chr6 82135808 82135986 -107143568 + MIR SINE MIR 65 250 -12 258 86 0 0 chr6 82139462 82139520 -107140034 - Alu SINE Alu 0 306 249 342 294 131 0 chr6 82139654 82139873 -107139681 + L2 LINE L2 2768 3025 -288 2240 113 0 0 chr6 82140283 82140613 -107138941 + AluSg SINE Alu 1 310 0 267 130 0 0 chr6 82143576 82143630 -107135924 + (TA)n Simple_repeat Simple_repeat 1 54 0 469 98 0 0 chr6 82143840 82143901 -107135653 - Alu SINE Alu -255 63 3 223 285 32 89 chr6 82147702 82147860 -107131694 - MER5B DNA MER1_type -29 149 1 27 29 0 0 chr6 82150063 82150097 -107129457 + AT_rich Low_complexity Low_complexity 1 34 0 203 354 40 30 chr6 82150695 82150794 -107128760 + L2 LINE L2 3204 3303 -10 344 273 127 0 chr6 82151317 82151427 -107128127 + MIR3 SINE MIR 76 199 -9 1428 167 109 18 chr6 82151850 82152126 -107127428 + AluJb SINE Alu 1 301 -11 1924 141 63 17 chr6 82152192 82152540 -107127014 + THE1B LTR MaLR 1 364 0 1090 128 12 0 chr6 82153421 82153585 -107125969 - AluSc SINE Alu -11 298 133 291 258 118 0 chr6 82155013 82155106 -107124448 + MIR SINE MIR 115 218 -44 21 82 0 0 chr6 82156179 82156228 -107123326 + AT_rich Low_complexity Low_complexity 1 49 0 204 40 0 0 chr6 82156566 82156591 -107122963 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 351 352 0 8 chr6 82157366 82157491 -107122063 - MIR3 SINE MIR -15 193 70 214 196 20 0 chr6 82157992 82158043 -107121511 + MIR SINE MIR 147 198 -64 497 313 77 24 chr6 82158654 82158900 -107120654 - MIR SINE MIR 0 262 4 412 302 21 73 chr6 82159553 82159608 -107119946 - MER5A DNA MER1_type 0 189 133 866 55 102 8 chr6 82159608 82159735 -107119819 + MER85 DNA T2_type 1 139 0 412 302 21 73 chr6 82159735 82159871 -107119683 - MER5A DNA MER1_type -56 133 8 24 53 0 0 chr6 82162250 82162288 -107117266 + GC_rich Low_complexity Low_complexity 1 38 0 1427 112 22 4 chr6 82166247 82166479 -107113075 - L1MA3 LINE L1 0 6305 6070 23 54 0 0 chr6 82166814 82166851 -107112703 + AT_rich Low_complexity Low_complexity 1 37 0 1749 168 7 10 chr6 82166831 82167169 -107112385 - AluJo SINE Alu 0 312 1 195 125 0 0 chr6 82168789 82168829 -107110725 + (TG)n Simple_repeat Simple_repeat 2 41 0 207 297 80 17 chr6 82169392 82169515 -107110039 - MIR SINE MIR -63 145 16 204 284 81 0 chr6 82169576 82169650 -107109904 + MIR3 SINE MIR 119 198 -10 25 31 0 0 chr6 82170164 82170196 -107109358 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 82170708 82170730 -107108824 + AT_rich Low_complexity Low_complexity 1 22 0 2069 147 0 0 chr6 82170930 82171236 -107108318 - AluSx SINE Alu -6 306 1 1104 174 9 28 chr6 82171324 82171542 -107108012 + MER20 DNA MER1_type 6 219 0 21 36 0 0 chr6 82171712 82171740 -107107814 + AT_rich Low_complexity Low_complexity 1 28 0 1232 112 22 0 chr6 82172925 82173103 -107106451 - AluSg/x SINE Alu -14 298 117 286 301 89 24 chr6 82173536 82173659 -107105895 - L1ME LINE L1 -453 5668 5538 216 214 11 34 chr6 82173776 82173865 -107105689 + CT-rich Low_complexity Low_complexity 2 88 0 243 0 0 0 chr6 82174204 82174231 -107105323 + (TG)n Simple_repeat Simple_repeat 1 27 0 1732 153 4 11 chr6 82174278 82174559 -107104995 - AluJo SINE Alu -33 279 1 27 29 0 0 chr6 82174741 82174775 -107104779 + AT_rich Low_complexity Low_complexity 1 34 0 778 216 18 6 chr6 82174776 82174947 -107104607 - AluJb SINE Alu -20 292 120 261 263 97 69 chr6 82175701 82175990 -107103564 - L1ME LINE L1 -2002 4144 3848 273 130 19 0 chr6 82176579 82176633 -107102921 - Alu SINE Alu 0 301 247 775 139 78 8 chr6 82176633 82176762 -107102792 - AluSq/x SINE Alu -175 138 1 259 295 55 46 chr6 82176987 82177204 -107102350 - L1P LINE L1 -3160 2986 2768 506 317 75 11 chr6 82177441 82177722 -107101832 - L1ME LINE L1 -3641 2505 2207 306 315 67 67 chr6 82178164 82178491 -107101063 - HAL1b LINE L1 -673 675 349 872 208 5 5 chr6 82178523 82178715 -107100839 + L1PB1 LINE L1 6 197 -6666 * 11646 200 16 7 chr6 82178712 82182524 -107097030 + L1PB1 LINE L1 1392 5280 -1582 770 151 25 0 chr6 82182525 82182644 -107096910 - LTR12 LTR ERV1 -234 480 359 302 238 12 0 chr6 82182644 82182724 -107096830 - LTR30 LTR ERV1 -98 624 544 1653 99 99 4 chr6 82182724 82182976 -107096578 - LTR12 LTR ERV1 -437 277 2 5709 138 13 27 chr6 82182976 82184300 -107095254 + L1PB1 LINE L1 5276 6570 -297 2134 131 0 10 chr6 82184300 82184613 -107094941 - AluSx SINE Alu 0 312 3 5709 138 13 27 chr6 82184613 82184906 -107094648 + L1PB1 LINE L1 6570 6866 -1 259 270 98 37 chr6 82185350 82185514 -107094040 - L1ME LINE L1 -393 6566 6394 25 0 0 0 chr6 82186568 82186593 -107092961 + AT_rich Low_complexity Low_complexity 1 25 0 2256 96 0 7 chr6 82187439 82187742 -107091812 - AluSc SINE Alu -8 301 1 642 274 107 13 chr6 82187742 82187976 -107091578 - MIR SINE MIR -4 258 3 797 71 9 0 chr6 82189098 82189211 -107090343 + (TTTC)n Simple_repeat Simple_repeat 2 115 0 509 208 79 0 chr6 82189215 82189316 -107090238 - FLAM_A SINE Alu -28 114 6 266 305 0 0 chr6 82189796 82189855 -107089699 + MIR SINE MIR 27 85 -177 2306 206 65 13 chr6 82190064 82190607 -107088947 + L1ME3A LINE L1 5595 6165 -5 2265 116 0 0 chr6 82190989 82191299 -107088255 + AluSq SINE Alu 1 310 -3 2337 163 42 2 chr6 82191321 82191731 -107087823 - MSTB LTR MaLR 0 426 1 1609 154 16 62 chr6 82193344 82193650 -107085904 - AluJb SINE Alu -20 292 1 2297 112 0 0 chr6 82193854 82194166 -107085388 - AluSq SINE Alu -1 312 1 369 298 157 16 chr6 82194522 82194713 -107084841 - MIR SINE MIR -19 243 26 189 107 0 0 chr6 82194771 82194799 -107084755 + (CA)n Simple_repeat Simple_repeat 1 28 0 21 57 0 0 chr6 82195755 82195790 -107083764 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr6 82195968 82196009 -107083545 + AT_rich Low_complexity Low_complexity 1 41 0 471 289 65 58 chr6 82196039 82196103 -107083451 - L1ME LINE L1 -912 6029 5967 1995 138 98 23 chr6 82196103 82196501 -107083053 + MSTA LTR MaLR 1 428 0 471 289 65 58 chr6 82196501 82197142 -107082412 - L1ME LINE L1 -974 5967 5319 749 315 41 9 chr6 82197181 82197644 -107081910 - L1ME LINE L1 -1794 5147 4670 388 353 46 35 chr6 82197881 82198249 -107081305 - L1ME LINE L1 -2542 4399 4028 1719 158 46 38 chr6 82198293 82198661 -107080893 - THE1C LTR MaLR -4 371 1 21 36 0 0 chr6 82198662 82198690 -107080864 + AT_rich Low_complexity Low_complexity 1 28 0 319 208 10 94 chr6 82198696 82198792 -107080762 + L1MC4 LINE L1 6615 6702 -1340 * 320 253 11 22 chr6 82198757 82198848 -107080706 - L1MC4 LINE L1 -1339 6703 6614 2390 90 3 0 chr6 82198849 82199148 -107080406 - AluSg SINE Alu -10 300 1 338 238 149 35 chr6 82199165 82199535 -107080019 - L1ME LINE L1 -2998 3943 3532 1378 247 147 20 chr6 82199796 82200383 -107079171 - MLT2F LTR ERVL -2 661 1 413 265 126 58 chr6 82200390 82200532 -107079022 - L1MCc LINE L1 -3739 3228 3097 1472 289 42 11 chr6 82200532 82200982 -107078572 + LTR16B LTR ERVL 1 464 0 413 265 126 58 chr6 82200982 82201141 -107078413 - L1MCc LINE L1 -3870 3097 2921 622 249 114 86 chr6 82201204 82201590 -107077964 - MLT1I LTR MaLR -9 400 4 1762 178 42 6 chr6 82201686 82202018 -107077536 - MER2 DNA MER2_type 0 344 1 948 241 4 26 chr6 82202277 82202377 -107077177 + MER58A DNA MER1_type 2 103 -2317 1866 148 45 22 chr6 82202377 82202734 -107076820 + MER47A DNA MER2_type 1 365 -1 948 241 4 26 chr6 82202734 82202861 -107076693 + MER58A DNA MER1_type 103 224 0 406 253 190 25 chr6 82204261 82204419 -107075135 + MLT1J2 LTR MaLR 267 450 0 3459 30 14 0 chr6 82204470 82204896 -107074658 + L1PA4 LINE L1 5724 6155 0 266 329 89 46 chr6 82205356 82205636 -107073918 - L2 LINE L2 0 3313 3022 286 265 34 51 chr6 82205948 82206065 -107073489 + MIR SINE MIR 98 212 -50 1249 287 103 29 chr6 82206142 82206626 -107072928 + MLT1G1 LTR MaLR 76 595 0 757 284 71 66 chr6 82207087 82208194 -107071360 - L1MCc LINE L1 -4671 2451 1129 556 274 55 41 chr6 82208727 82209019 -107070535 - L1MCc LINE L1 -6104 319 24 2239 95 0 14 chr6 82209175 82209471 -107070083 + AluY SINE Alu 1 292 -19 27 62 0 0 chr6 82209691 82209739 -107069815 + AT_rich Low_complexity Low_complexity 1 48 0 1440 172 0 8 chr6 82212435 82212703 -107066851 - L1PB4 LINE L1 -8 6148 5883 180 0 0 0 chr6 82212960 82212980 -107066574 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2037 156 0 0 chr6 82213331 82213639 -107065915 - AluSx SINE Alu -4 308 1 356 322 66 0 chr6 82213807 82213928 -107065626 - L2 LINE L2 -10 3262 3134 579 106 0 32 chr6 82214690 82214784 -107064770 + L1MA2 LINE L1 6214 6304 0 1126 257 84 50 chr6 82215230 82215807 -107063747 + L2 LINE L2 2711 3309 -4 2375 209 55 4 chr6 82215828 82216315 -107063239 + LTR53 LTR ERVL 1 512 -7 1071 222 114 3 chr6 82216548 82216754 -107062800 + LTR37A LTR ERV1 46 228 -198 423 92 0 0 chr6 82216754 82216819 -107062735 + (TA)n Simple_repeat Simple_repeat 2 66 0 1071 222 114 3 chr6 82216819 82216954 -107062600 + LTR37A LTR ERV1 228 425 -1 248 89 0 22 chr6 82217882 82217927 -107061627 + (CAA)n Simple_repeat Simple_repeat 3 46 0 194 188 0 0 chr6 82219026 82219058 -107060496 - MIR SINE MIR -91 117 86 379 286 194 18 chr6 82219956 82220173 -107059381 + L2 LINE L2 2400 2654 -660 276 77 0 0 chr6 82222448 82222487 -107057067 + (ATG)n Simple_repeat Simple_repeat 2 40 0 1004 264 20 0 chr6 82222501 82222747 -107056807 - MIR SINE MIR 0 262 12 1004 318 114 19 chr6 82223594 82224205 -107055349 + L2 LINE L2 2400 3067 -246 397 216 27 45 chr6 82224619 82224730 -107054824 - MLT1I LTR MaLR 0 409 301 260 226 0 5 chr6 82224840 82224917 -107054637 - MLT1I LTR MaLR -260 173 98 1193 279 63 47 chr6 82225452 82225947 -107053607 + LTR33 LTR ERVL 1 503 -18 2129 121 3 0 chr6 82226192 82226490 -107053064 - AluSx SINE Alu -12 300 2 1796 197 26 21 chr6 82226503 82226710 -107052844 - MLT1B LTR MaLR -2 388 177 1550 189 176 33 chr6 82226710 82226748 -107052806 - MLT2B1 LTR ERVL 0 520 489 476 32 16 0 chr6 82226748 82226810 -107052744 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 1550 189 176 33 chr6 82226810 82227226 -107052328 - MLT2B1 LTR ERVL -31 489 1 1796 197 26 21 chr6 82227226 82227404 -107052150 - MLT1B LTR MaLR -213 177 1 2019 112 10 20 chr6 82227541 82227836 -107051718 - AluSx SINE Alu -20 292 1 2249 154 9 0 chr6 82227914 82228259 -107051295 - MER7A DNA MER2_type 0 346 1 681 303 71 12 chr6 82228605 82228859 -107050695 - MLT1I LTR MaLR -140 269 1 245 226 19 0 chr6 82229743 82229796 -107049758 + L2 LINE L2 2686 2739 -575 1802 167 60 9 chr6 82229896 82230243 -107049311 + MLT1A1 LTR MaLR 1 365 0 2206 157 25 2 chr6 82230301 82230695 -107048859 + MER57A LTR ERV1 1 403 0 24 32 0 0 chr6 82231071 82231102 -107048452 + AT_rich Low_complexity Low_complexity 1 31 0 424 160 0 0 chr6 82231411 82231486 -107048068 + MER57A LTR ERV1 38 112 -291 263 296 37 80 chr6 82232146 82232308 -107047246 + MIR SINE MIR 58 212 -50 351 288 209 7 chr6 82232486 82232639 -107046915 - MIR SINE MIR -15 247 64 1640 261 70 24 chr6 82232805 82233344 -107046210 + MLT1F1 LTR MaLR 8 567 0 659 250 106 0 chr6 82233742 82233922 -107045632 - MER58C DNA MER1_type -16 199 1 880 223 11 0 chr6 82233974 82234158 -107045396 + MER105 DNA DNA 17 202 -2 195 379 0 0 chr6 82234180 82234246 -107045308 - L2 LINE L2 -2 3270 3205 538 294 88 10 chr6 82234492 82234686 -107044868 + MIR SINE MIR 34 242 -20 14484 134 16 45 chr6 82234696 82237184 -107042370 + Tigger1 DNA MER2_type 1 2417 -1 492 300 127 18 chr6 82237610 82237830 -107041724 - MIR SINE MIR -15 247 4 1232 214 28 6 chr6 82237830 82238147 -107041407 - MER33 DNA MER1_type 0 324 1 37 62 0 0 chr6 82239193 82239258 -107040296 + AT_rich Low_complexity Low_complexity 1 65 0 198 167 0 0 chr6 82239348 82239384 -107040170 + (TA)n Simple_repeat Simple_repeat 2 37 0 1828 163 22 48 chr6 82239384 82239740 -107039814 - MER7A DNA MER2_type -1 345 1 474 281 79 55 chr6 82239915 82240332 -107039222 + L1ME LINE L1 5398 5824 -297 2358 110 0 0 chr6 82240334 82240644 -107038910 + AluSg SINE Alu 1 310 0 873 161 6 37 chr6 82240867 82241028 -107038526 + FRAM SINE Alu 1 156 -20 755 302 60 7 chr6 82241757 82242058 -107037496 + MARNA DNA Mariner 254 570 -16 739 247 6 0 chr6 82242091 82242265 -107037289 + FRAM SINE Alu 1 175 -1 24 0 0 0 chr6 82242906 82242930 -107036624 + AT_rich Low_complexity Low_complexity 1 24 0 249 240 83 10 chr6 82243379 82243475 -107036079 + MLT1I LTR MaLR 299 401 -8 250 267 12 0 chr6 82243741 82243827 -107035727 + HsTC2 DNA Tc2 1 87 -1811 241 186 0 0 chr6 82243799 82243842 -107035712 + HsTC2 DNA Tc2 1854 1896 -2 * 360 77 0 0 chr6 82245444 82245496 -107034058 + (TG)n Simple_repeat Simple_repeat 1 52 0 730 240 155 10 chr6 82245881 82246081 -107033473 + MIR SINE MIR 1 229 -33 342 98 0 0 chr6 82246292 82246343 -107033211 + (CA)n Simple_repeat Simple_repeat 2 52 0 2117 120 0 3 chr6 82246345 82246629 -107032925 - AluSg SINE Alu -27 283 1 404 302 136 33 chr6 82246678 82246979 -107032575 - MLT1J1 LTR MaLR -51 395 64 207 0 0 0 chr6 82247471 82247494 -107032060 + (CAA)n Simple_repeat Simple_repeat 2 24 0 236 261 43 29 chr6 82248673 82248742 -107030812 - L2 LINE L2 -2 3311 3242 279 0 0 0 chr6 82249575 82249606 -107029948 + (CA)n Simple_repeat Simple_repeat 1 31 0 1791 173 7 0 chr6 82250007 82250307 -107029247 + AluSx SINE Alu 6 307 -5 231 167 0 0 chr6 82250707 82250749 -107028805 - L1ME LINE L1 -236 5885 5844 200 324 214 7 chr6 82252746 82252891 -107026663 - MIR3 SINE MIR -4 204 30 390 324 34 14 chr6 82252938 82253086 -107026468 - MIR SINE MIR -63 145 17 272 125 25 25 chr6 82253283 82253363 -107026191 + (TA)n Simple_repeat Simple_repeat 1 80 0 2525 209 12 14 chr6 82253363 82253856 -107025698 + MLT1F LTR MaLR 49 540 -2 1211 300 98 24 chr6 82253858 82254032 -107025522 - L2 LINE L2 -125 3188 3028 827 119 0 60 chr6 82254032 82254166 -107025388 + FLAM_C SINE Alu 1 126 -7 1211 300 98 24 chr6 82254166 82254666 -107024888 - L2 LINE L2 -285 3028 2455 27 0 0 0 chr6 82255635 82255662 -107023892 + AT_rich Low_complexity Low_complexity 1 27 0 2212 170 35 15 chr6 82256276 82256316 -107023238 - MLT2D LTR ERVL 0 414 376 273 57 0 0 chr6 82256316 82256351 -107023203 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 351 0 0 0 chr6 82256350 82256389 -107023165 + (GA)n Simple_repeat Simple_repeat 2 40 0 2212 170 35 15 chr6 82256351 82256754 -107022800 - MLT2D LTR ERVL -38 376 1 491 313 40 43 chr6 82256912 82257019 -107022535 + L1ME3A LINE L1 5101 5207 -963 2091 141 0 0 chr6 82257019 82257324 -107022230 + AluSx SINE Alu 1 305 -7 491 313 40 43 chr6 82257324 82258009 -107021545 + L1ME3A LINE L1 5207 5940 -230 195 162 0 0 chr6 82258050 82258087 -107021467 + (CTATA)n Simple_repeat Simple_repeat 5 41 0 1014 193 39 5 chr6 82258321 82258528 -107021026 + L1MC1 LINE L1 6101 6314 -19 23 33 0 0 chr6 82258596 82258626 -107020928 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 82258676 82258697 -107020857 + AT_rich Low_complexity Low_complexity 1 21 0 231 146 0 0 chr6 82258780 82258821 -107020733 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 6306 149 55 16 chr6 82258822 82260006 -107019548 - Tigger3b DNA MER2_type 0 1231 2 429 116 0 0 chr6 82260008 82260077 -107019477 + (CA)n Simple_repeat Simple_repeat 2 70 0 2201 93 0 0 chr6 82260464 82260744 -107018810 + AluSg SINE Alu 1 280 -30 361 207 92 0 chr6 82260759 82260846 -107018708 + MER5B DNA MER1_type 50 144 -34 244 265 106 33 chr6 82262263 82262508 -107017046 - HAL1b LINE L1 -1 1347 1085 667 284 66 8 chr6 82262522 82262779 -107016775 - L1ME1 LINE L1 -10 6156 5885 877 252 39 10 chr6 82262796 82263105 -107016449 - L1ME LINE L1 -3479 2601 2284 1070 261 41 28 chr6 82263146 82263533 -107016021 + L1ME LINE L1 400 791 -5279 1326 266 111 50 chr6 82263547 82264775 -107014779 - L1ME LINE L1 -4561 1519 238 234 290 41 41 chr6 82264957 82265102 -107014452 - L1MEd LINE L1 -5495 624 480 273 397 107 0 chr6 82265576 82265828 -107013726 + L2 LINE L2 2578 2856 -458 235 325 24 0 chr6 82266706 82266789 -107012765 + L3 LINE CR1 877 961 -616 192 289 52 41 chr6 82267067 82267164 -107012390 + L3 LINE CR1 1274 1371 -206 373 281 44 22 chr6 82267207 82267342 -107012212 + MLT1I LTR MaLR 68 205 -204 39 0 0 0 chr6 82267622 82267661 -107011893 + AT_rich Low_complexity Low_complexity 1 39 0 1491 176 4 47 chr6 82267678 82267956 -107011598 - AluJo SINE Alu -46 266 1 277 193 178 67 chr6 82267963 82268098 -107011456 - MER106A DNA MER1_type -84 152 3 194 354 160 7 chr6 82268108 82268252 -107011302 + L3 LINE CR1 1384 1549 -28 287 310 134 38 chr6 82268335 82268625 -107010929 + L2 LINE L2 2079 2396 -918 1104 303 172 10 chr6 82269615 82270114 -107009440 + L2 LINE L2 182 761 -2553 194 250 44 29 chr6 82270125 82270193 -107009361 + MIR SINE MIR 119 187 -75 1218 257 63 81 chr6 82272791 82273313 -107006241 - MLT1K LTR MaLR -7 581 69 1307 218 79 138 chr6 82273715 82274521 -107005033 - LTR41 LTR ERVL -6 767 9 2581 10 0 14 chr6 82274524 82274851 -107004703 + AluYb8 SINE Alu 1 323 0 339 212 141 0 chr6 82275305 82275390 -107004164 - L1ME3A LINE L1 -14 6156 6060 26 0 0 0 chr6 82275780 82275806 -107003748 + AT_rich Low_complexity Low_complexity 1 26 0 200 170 0 38 chr6 82276214 82276267 -107003287 + (TTA)n Simple_repeat Simple_repeat 3 53 0 406 314 131 0 chr6 82277570 82277745 -107001809 + MIR SINE MIR 8 205 -57 500 299 35 26 chr6 82278752 82278983 -107000571 + L1MC4 LINE L1 6761 6993 -1049 1865 78 4 0 chr6 82279089 82279334 -107000220 - L1PA10 LINE L1 -9 6159 5914 29 60 0 0 chr6 82279382 82279432 -107000122 + AT_rich Low_complexity Low_complexity 1 50 0 317 158 0 0 chr6 82280791 82280848 -106998706 - L1P LINE L1 -2509 3637 3581 5074 102 12 37 chr6 82280855 82280947 -106998607 + L1PB2 LINE L1 5352 5445 -706 563 51 26 0 chr6 82280947 82281025 -106998529 + MADE1 DNA Mariner 1 80 0 5074 102 12 37 chr6 82281025 82281189 -106998365 + L1PB2 LINE L1 5445 5611 -540 1504 105 10 0 chr6 82281189 82281398 -106998156 + AluSp SINE Alu 82 292 -21 5074 102 12 37 chr6 82281398 82281960 -106997594 + L1PB2 LINE L1 5611 6151 0 235 254 0 15 chr6 82282402 82282469 -106997085 + MER103 DNA DNA 8 73 -93 195 42 0 0 chr6 82282688 82282712 -106996842 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 281 292 35 35 chr6 82282861 82282974 -106996580 + MIR SINE MIR 150 262 0 406 228 156 24 chr6 82283540 82283707 -106995847 - MIR SINE MIR -1 261 73 720 230 48 5 chr6 82283719 82283906 -106995648 + L2 LINE L2 2438 2632 -682 908 312 118 27 chr6 82283917 82284366 -106995188 + L2 LINE L2 2823 3312 -1 239 0 32 0 chr6 82285004 82285035 -106994519 + (CAA)n Simple_repeat Simple_repeat 2 33 0 266 164 18 18 chr6 82285125 82285180 -106994374 + MLT1K LTR MaLR 532 586 -2 219 103 0 0 chr6 82285610 82285649 -106993905 + (T)n Simple_repeat Simple_repeat 1 39 0 401 261 142 17 chr6 82285652 82285828 -106993726 + MIR SINE MIR 65 262 0 248 314 12 71 chr6 82286654 82286823 -106992731 - MIR SINE MIR -50 212 54 234 0 0 0 chr6 82287299 82287325 -106992229 + (GA)n Simple_repeat Simple_repeat 1 26 0 201 74 0 0 chr6 82287603 82287630 -106991924 + (TC)n Simple_repeat Simple_repeat 2 28 0 271 268 61 132 chr6 82288098 82288508 -106991046 + MLT1-int LTR MaLR 986 1366 -5 1265 240 40 32 chr6 82288581 82288952 -106990602 - MLT1A2 LTR MaLR 0 374 1 1347 239 27 32 chr6 82288959 82289445 -106990109 + L1MEc LINE L1 2166 2609 -3606 299 324 56 21 chr6 82289680 82289822 -106989732 + MIR SINE MIR 115 261 -1 1125 76 6 6 chr6 82290059 82290217 -106989337 - L1MA6 LINE L1 -6 6294 6137 9982 179 51 7 chr6 82290217 82291704 -106987850 - L1M2c LINE L1 -1332 5876 4260 2119 125 0 0 chr6 82291704 82292001 -106987553 - AluSx SINE Alu -6 306 10 9982 179 51 7 chr6 82292001 82292699 -106986855 - L1M2c LINE L1 -2948 4260 3594 1345 184 56 61 chr6 82294350 82294894 -106984660 - L1M2c LINE L1 -3598 3610 3045 * 6626 199 45 39 chr6 82294883 82295973 -106983581 - L1PBa LINE L1 -2290 4918 3815 2113 104 3 41 chr6 82295973 82296290 -106983264 - AluSx SINE Alu -7 305 1 6626 199 45 39 chr6 82296290 82297077 -106982477 - L1PBa LINE L1 -3393 3815 3034 1832 157 67 14 chr6 82297078 82297434 -106982120 + THE1C LTR MaLR 1 375 0 9615 128 42 42 chr6 82297435 82299108 -106980446 + THE1C-int LTR MaLR 2 1734 -1 1896 140 77 8 chr6 82299109 82299460 -106980094 + THE1C LTR MaLR 1 375 0 789 132 28 14 chr6 82299460 82299604 -106979950 - L1PBa LINE L1 -4172 2691 2546 * 6071 127 22 10 chr6 82299600 82300439 -106979115 - L1PBa LINE L1 -4753 2110 1256 2040 135 7 0 chr6 82300439 82300735 -106978819 + AluSx SINE Alu 1 298 -14 6071 127 22 10 chr6 82300735 82300884 -106978670 - L1PBa LINE L1 -5607 1256 1110 362 203 14 0 chr6 82300925 82300999 -106978555 - MER74A LTR ERVL -95 463 389 3910 214 34 33 chr6 82301169 82302252 -106977302 - L1M2c LINE L1 -4291 2571 1402 1632 287 19 63 chr6 82302270 82302993 -106976561 - L1M2c LINE L1 -6571 292 -345 207 0 0 0 chr6 82303109 82303132 -106976422 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2488 75 3 0 chr6 82303411 82303719 -106975835 + AluY SINE Alu 1 309 -2 5643 256 58 44 chr6 82304171 82304287 -106975267 + L1ME1 LINE L1 20 133 -6082 7559 31 0 0 chr6 82304287 82305277 -106974277 - L1PA3 LINE L1 -3 6152 5162 5643 256 58 44 chr6 82305277 82305608 -106973946 + L1ME1 LINE L1 133 458 -5757 2490 45 0 0 chr6 82305608 82305897 -106973657 + AluY SINE Alu 1 289 -22 5643 256 58 44 chr6 82305897 82307987 -106971567 + L1ME1 LINE L1 458 2570 -3645 2907 236 66 24 chr6 82307989 82308993 -106970561 + L1ME1 LINE L1 4315 5360 -855 232 167 12 107 chr6 82309004 82309088 -106970466 + THE1C LTR MaLR 1 76 -352 * 1183 211 33 12 chr6 82309075 82309317 -106970237 + MLT1A1 LTR MaLR 119 365 0 1106 223 16 26 chr6 82309319 82309624 -106969930 + L1ME1 LINE L1 5370 5671 -564 1475 228 3 25 chr6 82309628 82309913 -106969641 + Tigger7 DNA MER2_type 1 279 -2208 1058 158 0 27 chr6 82309911 82310095 -106969459 + Tigger7 DNA MER2_type 2400 2578 -9 * 1405 236 24 54 chr6 82310113 82310354 -106969200 + L1ME1 LINE L1 5676 5922 -331 1288 101 0 45 chr6 82310354 82310553 -106969001 - MER30B DNA MER1_type 0 190 1 1405 236 24 54 chr6 82310553 82310874 -106968680 + L1ME1 LINE L1 5922 6253 0 180 308 0 31 chr6 82311196 82311261 -106968293 + MIR SINE MIR 56 118 -144 365 331 19 13 chr6 82311464 82311618 -106967936 + LTR16A1 LTR ERVL 291 445 -12 447 311 38 15 chr6 82311820 82311952 -106967602 + MIR SINE MIR 20 154 -108 203 161 65 16 chr6 82312084 82312146 -106967408 + A-rich Low_complexity Low_complexity 2 66 0 4987 157 42 10 chr6 82312565 82312904 -106966650 - L1MB1 LINE L1 0 6168 5841 2452 74 3 0 chr6 82312904 82313201 -106966353 - AluSp SINE Alu -15 298 1 4987 157 42 10 chr6 82313201 82313804 -106965750 - L1MB1 LINE L1 -327 5841 5203 1855 174 10 0 chr6 82313805 82314099 -106965455 - AluSx SINE Alu -15 297 1 225 196 0 0 chr6 82314542 82314588 -106964966 + LTR66 LTR ERVL 394 439 -171 232 223 0 53 chr6 82314610 82314704 -106964850 + L1MC4 LINE L1 6615 6703 -1339 280 121 0 61 chr6 82314707 82314773 -106964781 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 257 289 0 0 chr6 82314784 82314874 -106964680 - L1MC4 LINE L1 -1339 6703 6614 228 163 0 0 chr6 82314876 82314919 -106964635 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 273 250 65 56 chr6 82315767 82315875 -106963679 - MIR SINE MIR -63 199 91 1873 153 52 8 chr6 82316118 82316503 -106963051 - L1MA9 LINE L1 -1 6311 5910 24 0 0 0 chr6 82317841 82317865 -106961689 + AT_rich Low_complexity Low_complexity 1 24 0 187 316 0 18 chr6 82317885 82317942 -106961612 + MIR SINE MIR 9 64 -198 22 56 0 0 chr6 82318434 82318470 -106961084 + AT_rich Low_complexity Low_complexity 1 36 0 473 204 44 9 chr6 82319506 82319619 -106959935 + MER94 DNA DNA 3 119 -15 248 143 0 0 chr6 82319651 82319693 -106959861 - LTR40a LTR ERVL -22 497 456 222 233 0 0 chr6 82319695 82319755 -106959799 + (TATG)n Simple_repeat Simple_repeat 1 60 0 2147 117 3 0 chr6 82320196 82320487 -106959067 - AluSx SINE Alu -20 292 1 289 342 59 20 chr6 82321862 82322014 -106957540 + MIR SINE MIR 49 206 -56 936 259 86 0 chr6 82322108 82322328 -106957226 - MIR SINE MIR -3 259 21 270 282 35 12 chr6 82323123 82323208 -106956346 - MIR SINE MIR -2 260 174 1121 252 151 21 chr6 82323222 82323658 -106955896 + MLT1J LTR MaLR 2 494 -17 529 230 194 0 chr6 82323663 82323802 -106955752 - MIR SINE MIR -83 179 14 186 43 0 0 chr6 82323951 82323974 -106955580 + (T)n Simple_repeat Simple_repeat 1 23 0 36 0 0 0 chr6 82325912 82325948 -106953606 + AT_rich Low_complexity Low_complexity 1 36 0 2157 83 0 32 chr6 82326262 82326574 -106952980 - AluSc SINE Alu -7 302 1 308 235 0 0 chr6 82328111 82328179 -106951375 + L1MC4 LINE L1 6636 6703 -1339 315 248 53 38 chr6 82328200 82328333 -106951221 - L1ME4a LINE L1 -16 6105 5971 2150 108 41 0 chr6 82328491 82328786 -106950768 - AluSx SINE Alu -5 307 1 188 358 80 22 chr6 82328979 82329116 -106950438 - MIR3 SINE MIR -6 202 58 1342 109 23 0 chr6 82329977 82330198 -106949356 - L1MA8 LINE L1 0 6291 6066 556 133 170 7 chr6 82330198 82330333 -106949221 + L1 LINE L1 4896 5052 -1094 808 271 49 0 chr6 82332258 82332461 -106947093 + MIR SINE MIR 47 259 -3 320 268 168 50 chr6 82332474 82332653 -106946901 + MIR SINE MIR 63 262 0 22 0 0 0 chr6 82333747 82333769 -106945785 + AT_rich Low_complexity Low_complexity 1 22 0 191 343 127 28 chr6 82335652 82335833 -106943721 - MIR SINE MIR -46 216 18 275 269 39 0 chr6 82336319 82336397 -106943157 - L2 LINE L2 -9 3263 3183 3035 240 31 4 chr6 82337137 82338317 -106941237 - L1MB7 LINE L1 -5 6179 4963 3483 242 92 53 chr6 82338466 82340166 -106939388 + L1MEc LINE L1 37 1803 -4593 1072 271 74 30 chr6 82340177 82340608 -106938946 - L1MEc LINE L1 -5890 506 57 206 154 0 26 chr6 82341377 82341416 -106938138 + T-rich Low_complexity Low_complexity 6 43 0 755 269 21 43 chr6 82341620 82341854 -106937700 + MIR SINE MIR 23 251 -11 21 0 0 0 chr6 82343068 82343089 -106936465 + AT_rich Low_complexity Low_complexity 1 21 0 186 264 14 28 chr6 82343635 82343707 -106935847 - L2 LINE L2 -70 3243 3173 22 0 0 0 chr6 82343723 82343745 -106935809 + AT_rich Low_complexity Low_complexity 1 22 0 204 67 0 0 chr6 82343950 82343980 -106935574 + (TG)n Simple_repeat Simple_repeat 2 31 0 584 283 134 36 chr6 82344063 82344286 -106935268 - MIR SINE MIR 0 262 18 2199 218 54 99 chr6 82345322 82346292 -106933262 - L1MEc LINE L1 -5434 962 37 405 286 56 17 chr6 82348599 82348777 -106930777 + LTR41 LTR ERVL 1 185 -588 275 215 37 47 chr6 82349260 82349367 -106930187 + LTR41 LTR ERVL 662 767 -6 365 313 86 6 chr6 82349613 82349776 -106929778 - MIR3 SINE MIR -14 194 19 1159 221 198 26 chr6 82349830 82350255 -106929299 - MLT1D LTR MaLR 0 505 8 2081 86 65 14 chr6 82350304 82350595 -106928959 - AluSg SINE Alu 0 310 5 21 36 0 0 chr6 82351218 82351246 -106928308 + AT_rich Low_complexity Low_complexity 1 28 0 357 336 48 0 chr6 82352424 82352549 -106927005 - L2 LINE L2 0 3313 3183 2288 92 7 3 chr6 82352910 82353202 -106926352 + AluSg SINE Alu 1 293 -17 785 158 6 0 chr6 82353349 82353507 -106926047 + CT-rich Low_complexity Low_complexity 1 159 0 297 221 77 39 chr6 82353562 82353666 -106925888 - MLT1K LTR MaLR -292 296 189 252 282 69 126 chr6 82354518 82354692 -106924862 - MIR3 SINE MIR -26 182 19 303 324 177 26 chr6 82355030 82355651 -106923903 + L2 LINE L2 2333 3048 -224 299 348 156 26 chr6 82355992 82356415 -106923139 + L2 LINE L2 1177 1654 -1660 500 289 94 31 chr6 82356598 82356885 -106922669 + L2 LINE L2 2859 3163 -150 2662 142 12 2 chr6 82357870 82358294 -106921260 - MSTA LTR MaLR 0 428 1 227 335 72 60 chr6 82358404 82358735 -106920819 + L2 LINE L2 1852 2186 -1128 2418 106 19 30 chr6 82358860 82359228 -106920326 + THE1B LTR MaLR 1 364 0 465 250 140 25 chr6 82359787 82359987 -106919567 - MIR SINE MIR -30 232 10 426 293 103 26 chr6 82360350 82360582 -106918972 - MIR SINE MIR -11 251 2 659 279 71 21 chr6 82360649 82360994 -106918560 - L1ME3A LINE L1 -4 6166 5805 489 211 147 13 chr6 82362185 82362341 -106917213 - MER5B DNA MER1_type 0 178 2 2086 107 0 14 chr6 82362963 82363289 -106916265 - AluSg1 SINE Alu 0 309 1 307 287 141 100 chr6 82363621 82363962 -106915592 - L2 LINE L2 -1 3271 2917 228 296 118 15 chr6 82365681 82365816 -106913738 + MLT1J2 LTR MaLR 39 187 -263 262 238 59 50 chr6 82366019 82366120 -106913434 + L2 LINE L2 1838 1939 -1375 263 355 181 18 chr6 82366140 82366201 -106913353 + L2 LINE L2 2226 2276 -1038 2762 96 3 5 chr6 82366201 82366577 -106912977 + THE1C LTR MaLR 1 375 0 9566 122 31 43 chr6 82366577 82368177 -106911377 + THE1C-int LTR MaLR 1 1580 0 2353 122 22 5 chr6 82368177 82368546 -106911008 + THE1C LTR MaLR 1 375 0 263 355 181 18 chr6 82368546 82369025 -106910529 + L2 LINE L2 2275 2856 -458 225 328 219 16 chr6 82369058 82369186 -106910368 + L2 LINE L2 2893 3046 -226 2234 105 0 3 chr6 82370069 82370363 -106909191 - AluSc SINE Alu -14 295 3 4737 128 35 9 chr6 82370395 82371194 -106908360 - L1MA6 LINE L1 -5 6295 5476 3333 126 49 5 chr6 82371918 82372507 -106907047 - L1MA5 LINE L1 -10 6290 5676 21512 177 24 16 chr6 82372509 82378743 -106900811 - L1 LINE L1 -1113 6452 15 2250 156 7 39 chr6 82378747 82379330 -106900224 - L1M1 LINE L1 -755 5391 4920 * 6492 166 10 1 chr6 82379329 82380497 -106899057 + L1M1 LINE L1 3728 4906 -1240 231 61 0 0 chr6 82380497 82380530 -106899024 + (CAA)n Simple_repeat Simple_repeat 2 34 0 241 299 40 90 chr6 82380560 82380761 -106898793 - MIR SINE MIR -70 192 2 262 299 183 7 chr6 82381019 82381156 -106898398 - L2 LINE L2 -1 3271 3111 264 282 56 0 chr6 82382760 82382831 -106896723 - MER5A DNA MER1_type -1 188 114 250 310 70 30 chr6 82382783 82382883 -106896671 + MER5A DNA MER1_type 36 139 -50 * 21 0 0 0 chr6 82383566 82383587 -106895967 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 82384086 82384114 -106895440 + AT_rich Low_complexity Low_complexity 1 28 0 514 231 171 16 chr6 82385557 82385808 -106893746 - L1M4 LINE L1 -1768 4378 4089 505 340 47 19 chr6 82385799 82386120 -106893434 - L1MEc LINE L1 -3353 3187 2858 * 249 47 70 0 chr6 82386118 82386161 -106893393 - L1MA7 LINE L1 0 6291 6246 * 3122 132 15 97 chr6 82386184 82386497 -106893057 - L1MA7 LINE L1 -27 6264 6034 2528 58 0 13 chr6 82386497 82386807 -106892747 - AluY SINE Alu -5 306 1 3122 132 15 97 chr6 82386807 82387166 -106892388 - L1MA7 LINE L1 -257 6034 5647 1193 189 10 0 chr6 82387167 82387368 -106892186 - MSTD LTR MaLR 0 396 194 584 220 16 4 chr6 82387370 82387628 -106891926 + GA-rich Low_complexity Low_complexity 1 261 0 360 268 0 12 chr6 82387717 82387799 -106891755 - MSTD LTR MaLR -315 81 1 4083 227 56 44 chr6 82387799 82388872 -106890682 - MSTD-int LTR MaLR -1 1734 649 799 172 16 0 chr6 82388875 82389003 -106890551 - MSTD LTR MaLR -2 394 265 4995 148 31 10 chr6 82389013 82389933 -106889621 + L1PB4 LINE L1 5217 6156 0 354 299 52 34 chr6 82389946 82390237 -106889317 - L1MEc LINE L1 -4787 1934 1639 235 288 50 31 chr6 82390275 82390497 -106889057 - L1MEc LINE L1 -4928 1510 1285 34 42 0 0 chr6 82390556 82390604 -106888950 + AT_rich Low_complexity Low_complexity 1 48 0 303 277 39 15 chr6 82391514 82391644 -106887910 - L1MEc LINE L1 -5936 594 462 * 660 222 65 18 chr6 82391641 82391920 -106887634 - L1MEc LINE L1 -5189 1351 1060 259 225 181 14 chr6 82392091 82392229 -106887325 - L1MEc LINE L1 -6123 417 257 530 265 69 29 chr6 82392257 82392502 -106887052 - L1MEc LINE L1 -6245 295 41 28 91 0 0 chr6 82392873 82392950 -106886604 + AT_rich Low_complexity Low_complexity 1 77 0 186 359 111 20 chr6 82392954 82393297 -106886257 + L2 LINE L2 1642 2015 -1299 599 343 54 67 chr6 82393723 82394245 -106885309 + L2 LINE L2 2389 2903 -411 905 135 28 7 chr6 82394434 82394575 -106884979 - U4 snRNA snRNA -1 144 1 235 303 65 13 chr6 82394581 82394736 -106884818 - L1M4 LINE L1 -1896 4250 4088 213 159 0 0 chr6 82394781 82394825 -106884729 + (CA)n Simple_repeat Simple_repeat 1 44 0 2411 182 109 40 chr6 82394832 82395353 -106884201 + MER68 LTR ERV1 6 562 0 216 182 0 0 chr6 82395365 82395409 -106884145 + (TA)n Simple_repeat Simple_repeat 2 45 0 304 308 68 0 chr6 82395446 82395563 -106883991 - L1M4 LINE L1 -2210 3936 3812 41 36 0 0 chr6 82395712 82395767 -106883787 + AT_rich Low_complexity Low_complexity 1 55 0 655 343 96 21 chr6 82395776 82396357 -106883197 + L2 LINE L2 2186 2810 -504 474 230 169 17 chr6 82398564 82398742 -106880812 - MIR SINE MIR -18 244 40 396 317 79 61 chr6 82399046 82399492 -106880062 + L2 LINE L2 2644 3117 -155 191 227 13 80 chr6 82402119 82402194 -106877360 - L2 LINE L2 -76 3237 3168 356 266 140 43 chr6 82402209 82402487 -106877067 + MARNA DNA Mariner 33 337 -249 2276 177 18 2 chr6 82402512 82402908 -106876646 + LOR1b LTR ERV1 60 461 0 264 213 0 27 chr6 82403350 82403425 -106876129 + L1MB7 LINE L1 6104 6176 -2 21 36 0 0 chr6 82403612 82403640 -106875914 + AT_rich Low_complexity Low_complexity 1 28 0 1380 232 101 43 chr6 82404587 82404891 -106874663 - MLT2B2 LTR ERVL 0 515 171 2371 98 5 69 chr6 82404891 82405280 -106874274 + THE1B LTR MaLR 1 364 0 1380 232 101 43 chr6 82405280 82405462 -106874092 - MLT2B2 LTR ERVL -344 171 1 1044 193 77 25 chr6 82405462 82405747 -106873807 + L1MB8 LINE L1 5873 6172 -6 195 114 0 0 chr6 82406243 82406278 -106873276 + (A)n Simple_repeat Simple_repeat 1 35 0 183 285 138 46 chr6 82407210 82407340 -106872214 + L2 LINE L2 3129 3270 -2 244 117 17 17 chr6 82407529 82407589 -106871965 + (TA)n Simple_repeat Simple_repeat 2 61 0 1357 279 93 28 chr6 82408832 82409364 -106870190 + L2 LINE L2 2746 3313 0 386 217 87 0 chr6 82409972 82410064 -106869490 + MER103 DNA DNA 11 110 -56 3141 170 26 2 chr6 82410844 82411426 -106868128 - L1MC3 LINE L1 -6 7779 7184 7197 155 30 14 chr6 82411434 82412683 -106866871 + Tigger1 DNA MER2_type 1 1269 -1149 4483 146 42 0 chr6 82412691 82413449 -106866105 + Tigger1 DNA MER2_type 1628 2417 -1 270 254 127 0 chr6 82413449 82413520 -106866034 - L1MC3 LINE L1 -607 7178 7099 225 0 0 0 chr6 82413853 82413878 -106865676 + (T)n Simple_repeat Simple_repeat 1 25 0 414 325 193 16 chr6 82414535 82414913 -106864641 + MLT1L LTR MaLR 132 576 -39 3158 245 70 9 chr6 82415281 82416044 -106863510 - MER21B LTR ERV1 -12 851 43 375 192 27 14 chr6 82416044 82416117 -106863437 - MER21B LTR ERV1 -771 92 19 1009 198 105 87 chr6 82417328 82417717 -106861837 + MER67D LTR ERV1 1 403 -243 23 0 0 0 chr6 82420758 82420781 -106858773 + AT_rich Low_complexity Low_complexity 1 23 0 293 380 7 27 chr6 82421077 82421227 -106858327 - MER5A DNA MER1_type 0 189 43 2281 99 3 10 chr6 82421286 82421598 -106857956 - AluSq SINE Alu -3 310 1 2200 112 0 31 chr6 82422707 82423028 -106856526 + AluSx SINE Alu 1 311 -1 1107 226 14 0 chr6 82423506 82423727 -106855827 - MER58A DNA MER1_type 0 224 1 934 185 0 0 chr6 82423978 82424124 -106855430 + FRAM SINE Alu 1 146 -30 326 282 225 7 chr6 82424889 82425031 -106854523 - L1ME LINE L1 -464 5657 5485 21 0 0 0 chr6 82425057 82425078 -106854476 + AT_rich Low_complexity Low_complexity 1 21 0 393 299 39 0 chr6 82425151 82425278 -106854276 - MIR SINE MIR -109 153 22 501 165 9 26 chr6 82425970 82426085 -106853469 - L1MA9 LINE L1 -40 6272 6160 22 35 0 0 chr6 82426886 82426915 -106852639 + AT_rich Low_complexity Low_complexity 1 29 0 33 43 0 0 chr6 82427513 82427560 -106851994 + AT_rich Low_complexity Low_complexity 1 47 0 3937 113 142 140 chr6 82427940 82429343 -106850211 + pTR5 LTR ERV1 382 2438 0 438 260 175 17 chr6 82429445 82429622 -106849932 + MIR SINE MIR 58 262 0 227 247 34 17 chr6 82429638 82429705 -106849849 - MIR SINE MIR -62 146 79 279 350 35 22 chr6 82430073 82430210 -106849344 + MIR SINE MIR 40 182 -56 2576 157 33 108 chr6 82430635 82432183 -106847371 - L1PA16 LINE L1 -13 6153 4696 2418 83 0 0 chr6 82432635 82432937 -106846617 + AluY SINE Alu 1 302 -9 849 266 98 68 chr6 82432987 82433188 -106846366 - L2 LINE L2 -10 3303 3110 248 132 0 0 chr6 82433188 82433226 -106846328 - L1 LINE L1 -1124 5022 4985 849 266 98 68 chr6 82433226 82433711 -106845843 - L2 LINE L2 -203 3110 2487 330 274 0 0 chr6 82433905 82433978 -106845576 + L2 LINE L2 2709 2781 -533 1271 247 166 57 chr6 82433982 82434662 -106844892 - L2 LINE L2 -833 2481 1728 519 280 96 34 chr6 82435146 82435385 -106844169 + MLT1L LTR MaLR 362 615 0 671 302 65 26 chr6 82435526 82435758 -106843796 - MIR SINE MIR 0 262 22 391 183 192 10 chr6 82436354 82436458 -106843096 - MIR SINE MIR -71 191 69 276 323 92 12 chr6 82436497 82436661 -106842893 + L2 LINE L2 3121 3297 -16 45 69 0 0 chr6 82436662 82436749 -106842805 + AT_rich Low_complexity Low_complexity 1 87 0 2208 93 0 27 chr6 82436832 82437181 -106842373 - AluSp SINE Alu 0 313 3 509 305 18 6 chr6 82437259 82437423 -106842131 - MER117 DNA MER1_type -18 179 14 30 0 0 0 chr6 82438411 82438441 -106841113 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 82439032 82439060 -106840494 + AT_rich Low_complexity Low_complexity 1 28 0 305 195 73 12 chr6 82439256 82439338 -106840216 - L1ME4a LINE L1 0 6121 6035 260 344 107 0 chr6 82439681 82439812 -106839742 + MLT1J LTR MaLR 6 150 -361 271 347 8 8 chr6 82439832 82439953 -106839601 + MLT1J LTR MaLR 124 244 -267 300 291 45 8 chr6 82440421 82440555 -106838999 + L1ME3 LINE L1 3427 3565 -2581 436 309 60 48 chr6 82440712 82440961 -106838593 - MLT1I LTR MaLR -123 286 35 455 292 56 40 chr6 82441038 82441360 -106838194 + L1ME3 LINE L1 3608 3934 -2212 2311 81 33 9 chr6 82441381 82441714 -106837840 - L1PA13 LINE L1 -5 6158 5818 1119 191 81 19 chr6 82441811 82442131 -106837423 - L1MC4a LINE L1 -9 7799 7460 14066 144 22 21 chr6 82442131 82443821 -106835733 + Tigger1 DNA MER2_type 2 1697 -721 1514 182 25 9 chr6 82443821 82444145 -106835409 + L1MA3 LINE L1 5975 6303 -2 14066 144 22 21 chr6 82444145 82444868 -106834686 + Tigger1 DNA MER2_type 1697 2418 0 3177 246 23 15 chr6 82444868 82445833 -106833721 - L1MC4a LINE L1 -346 7462 6533 862 229 95 53 chr6 82445841 82446178 -106833376 - MLT1D LTR MaLR -154 351 1 2066 241 74 18 chr6 82446178 82446830 -106832724 - L1MC4a LINE L1 -1787 6021 5334 533 301 112 20 chr6 82446874 82447481 -106832073 + L1ME3 LINE L1 4004 4666 -1480 603 317 78 34 chr6 82447535 82448087 -106831467 + L1ME3 LINE L1 5345 5920 -242 336 250 114 29 chr6 82449523 82449663 -106829891 + MER103 DNA DNA 9 160 -6 539 296 122 69 chr6 82450401 82451364 -106828190 + L2 LINE L2 2318 3310 -3 588 321 102 5 chr6 82451458 82451673 -106827881 - MIR SINE MIR -14 248 13 1575 227 34 57 chr6 82452367 82452517 -106827037 + MLT1D LTR MaLR 23 175 -330 2522 71 0 3 chr6 82452517 82452828 -106826726 - AluY SINE Alu -1 310 1 1575 227 34 57 chr6 82452828 82453065 -106826489 + MLT1D LTR MaLR 175 416 -89 2432 45 14 7 chr6 82453065 82453356 -106826198 - AluY SINE Alu -18 293 1 1575 227 34 57 chr6 82453356 82453393 -106826161 + MLT1D LTR MaLR 416 452 -53 2101 101 10 23 chr6 82453393 82453699 -106825855 - AluSc SINE Alu -7 302 1 1575 227 34 57 chr6 82453699 82453766 -106825788 + MLT1D LTR MaLR 452 505 0 310 235 82 0 chr6 82454471 82454556 -106824998 - MLT1I LTR MaLR 0 409 318 259 270 95 0 chr6 82455335 82455398 -106824156 + Charlie1 DNA MER1_type 7 75 -2686 * 2590 169 17 72 chr6 82455394 82456034 -106823520 + Charlie1 DNA MER1_type 2145 2749 -12 671 183 11 147 chr6 82456125 82456316 -106823238 - AluJb SINE Alu -11 301 137 424 275 62 46 chr6 82456648 82456888 -106822666 + MLT1J LTR MaLR 233 476 -35 2084 182 46 33 chr6 82456961 82457416 -106822138 - MLT1C LTR MaLR -6 461 1 210 270 135 14 chr6 82457417 82457491 -106822063 - MIR SINE MIR -110 98 16 283 313 15 0 chr6 82457559 82457626 -106821928 + MER5A DNA MER1_type 57 124 -65 1932 262 38 14 chr6 82457643 82458227 -106821327 - L1ME1 LINE L1 -23 6143 5546 1925 112 4 0 chr6 82459842 82460101 -106819453 - AluSx SINE Alu -18 294 35 267 264 55 22 chr6 82460151 82460242 -106819312 + MIR SINE MIR 97 190 -72 402 234 133 25 chr6 82461059 82461217 -106818337 - MER104 DNA Tc2 -5 175 1 1078 165 42 0 chr6 82461275 82461317 -106818237 + L1MC3 LINE L1 6917 6956 -829 494 91 39 0 chr6 82461317 82461394 -106818160 + MADE1 DNA Mariner 1 80 0 1078 165 42 0 chr6 82461394 82461563 -106817991 + L1MC3 LINE L1 6956 7137 -648 1187 165 73 36 chr6 82461571 82461819 -106817735 - AluSx SINE Alu -15 297 41 3412 154 39 35 chr6 82461820 82462469 -106817085 + L1MC3 LINE L1 7133 7783 -2 1050 142 82 8 chr6 82462808 82463120 -106816434 - MLT1B LTR MaLR -7 383 1 785 214 11 11 chr6 82464244 82464431 -106815123 + MER53 DNA DNA 1 187 -2 1104 219 53 98 chr6 82465005 82465498 -106814056 - MER39 LTR ERV1 0 685 233 1075 88 0 0 chr6 82466124 82466272 -106813282 + L1PA14 LINE L1 6012 6159 -2 981 207 37 0 chr6 82467605 82467793 -106811761 + MER20 DNA MER1_type 24 218 -1 1923 207 0 19 chr6 82468355 82468727 -106810827 - MLT1A1 LTR MaLR 0 365 1 208 393 93 0 chr6 82469696 82469803 -106809751 - MIR SINE MIR -65 143 27 1868 138 7 17 chr6 82470779 82471069 -106808485 - AluSq SINE Alu -26 287 1 274 343 107 43 chr6 82472520 82472660 -106806894 + L2 LINE L2 3121 3269 -3 190 254 115 25 chr6 82474302 82474424 -106805130 - MIR SINE MIR -56 206 74 2350 101 0 0 chr6 82474446 82474754 -106804800 + AluSq SINE Alu 1 308 -5 256 311 203 11 chr6 82474796 82474973 -106804581 - MIR SINE MIR -50 212 2 223 279 29 0 chr6 82475139 82475207 -106804347 + MIR SINE MIR 175 244 -18 1342 133 22 5 chr6 82475663 82475899 -106803655 + L1PA8 LINE L1 5895 6159 -4 384 204 126 0 chr6 82478049 82478152 -106801402 - LTR50 LTR ERVL -2 793 678 2262 290 44 35 chr6 82478222 82478875 -106800679 + HERV16 LTR ERVL 1573 2238 -2758 2108 106 0 0 chr6 82478875 82479149 -106800405 - AluSq SINE Alu -8 305 32 2262 290 44 35 chr6 82479149 82479413 -106800141 + HERV16 LTR ERVL 2238 2498 -2498 849 331 74 42 chr6 82479465 82480035 -106799519 + HERV16 LTR ERVL 2914 3503 -1982 604 298 42 25 chr6 82480134 82480215 -106799339 + HERV16 LTR ERVL 4084 4162 -1492 1491 191 21 80 chr6 82480215 82480603 -106798951 + MLT1A1 LTR MaLR 1 365 0 604 298 42 25 chr6 82480603 82480759 -106798795 + HERV16 LTR ERVL 4162 4325 -1329 687 255 0 53 chr6 82481126 82481314 -106798240 + MER5B DNA MER1_type 1 178 0 238 241 38 0 chr6 82481319 82481398 -106798156 - MER103 DNA DNA -54 112 31 279 182 45 45 chr6 82481530 82481618 -106797936 - L1MC/D LINE L1 -2347 5461 5374 1902 180 10 35 chr6 82481969 82482369 -106797185 - MLT1B LTR MaLR 0 390 1 366 23 0 0 chr6 82482507 82482550 -106797004 + (TG)n Simple_repeat Simple_repeat 2 44 0 442 289 120 67 chr6 82483985 82484342 -106795212 - L1M2 LINE L1 -5779 1070 695 319 230 92 0 chr6 82484596 82484683 -106794871 - MER5B DNA MER1_type -34 144 50 2152 100 0 0 chr6 82484698 82484978 -106794576 - AluSg SINE Alu -30 280 1 321 140 0 0 chr6 82485365 82485422 -106794132 + (TG)n Simple_repeat Simple_repeat 2 58 0 6276 148 55 17 chr6 82485424 82486609 -106792945 + Tigger3b DNA MER2_type 2 1231 0 231 146 0 0 chr6 82486610 82486651 -106792903 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr6 82486734 82486755 -106792799 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 82486805 82486835 -106792719 + AT_rich Low_complexity Low_complexity 1 30 0 1028 188 39 5 chr6 82486904 82487111 -106792443 - L1MC1 LINE L1 -19 6314 6101 195 162 0 0 chr6 82487345 82487382 -106792172 + (TATAG)n Simple_repeat Simple_repeat 5 41 0 491 319 92 34 chr6 82487423 82488068 -106791486 - L1ME3A LINE L1 -230 5940 5245 2091 141 0 0 chr6 82488108 82488413 -106791141 - AluSx SINE Alu -7 305 1 22 0 0 0 chr6 82488456 82488478 -106791076 + AT_rich Low_complexity Low_complexity 1 22 0 331 158 0 24 chr6 82488554 82488636 -106790918 + CT-rich Low_complexity Low_complexity 2 81 0 804 273 122 6 chr6 82488662 82488973 -106790581 - L1MEc LINE L1 -6013 383 37 459 286 56 17 chr6 82491281 82491459 -106788095 + LTR41 LTR ERVL 1 185 -588 547 226 23 15 chr6 82492183 82492316 -106787238 - MER94 DNA DNA 0 134 1 366 23 0 0 chr6 82492956 82492999 -106786555 + (TATG)n Simple_repeat Simple_repeat 2 44 0 700 158 9 0 chr6 82493000 82493114 -106786440 - FLAM_C SINE Alu -17 116 2 30 27 0 0 chr6 82493364 82493401 -106786153 + AT_rich Low_complexity Low_complexity 1 37 0 311 361 46 8 chr6 82493612 82493742 -106785812 + MIR SINE MIR 17 151 -57 203 257 99 20 chr6 82493783 82493884 -106785670 - MIR SINE MIR -10 252 144 320 308 153 40 chr6 82493926 82494352 -106785202 + L2 LINE L2 423 896 -2418 1671 233 22 0 chr6 82494813 82495170 -106784384 - MLT1A1 LTR MaLR 0 365 1 382 299 71 15 chr6 82495677 82495855 -106783699 + MIR SINE MIR 3 194 -14 3284 224 41 41 chr6 82496077 82496857 -106782697 + L1MD2 LINE L1 5394 6177 -182 1986 132 4 0 chr6 82496857 82497182 -106782372 + AluSx SINE Alu 1 326 0 3284 224 41 41 chr6 82497182 82497356 -106782198 + L1MD2 LINE L1 6176 6349 -10 558 290 80 42 chr6 82498127 82498389 -106781165 + LTR16A LTR ERVL 179 450 0 1675 337 20 20 chr6 82498394 82498769 -106780785 + HERV16 LTR ERVL 6 383 -4613 909 192 73 127 chr6 82498769 82499164 -106780390 + MLT1A2 LTR MaLR 1 374 0 1675 337 20 20 chr6 82499164 82499447 -106780107 + HERV16 LTR ERVL 382 664 -4332 1912 322 23 17 chr6 82499489 82500194 -106779360 + HERV16 LTR ERVL 742 1450 -3546 688 299 23 37 chr6 82500293 82500510 -106779044 + LTR16A LTR ERVL 235 448 -2 1213 161 86 105 chr6 82500694 82500980 -106778574 - MLT1A1 LTR MaLR 0 365 86 2827 13 0 0 chr6 82500980 82501287 -106778267 - AluY SINE Alu -3 308 2 1213 161 86 105 chr6 82501287 82501372 -106778182 - MLT1A1 LTR MaLR -279 86 1 265 323 147 22 chr6 82501506 82501825 -106777729 + L2 LINE L2 2001 2359 -955 256 327 168 0 chr6 82501937 82502050 -106777504 - L2 LINE L2 0 3272 3141 746 202 156 0 chr6 82502265 82502438 -106777116 + MER3 DNA MER1_type 4 203 -6 425 239 0 0 chr6 82502402 82502490 -106777064 - MER3 DNA MER1_type -120 89 2 * 222 336 74 8 chr6 82502537 82502659 -106776895 - L2 LINE L2 -497 2817 2688 1548 189 25 4 chr6 82503153 82503434 -106776120 - AluJo SINE Alu -25 287 1 4055 235 113 64 chr6 82504556 82506938 -106772616 + L1MC3 LINE L1 5 2536 -3890 4404 177 11 20 chr6 82506968 82507866 -106771688 + L1MA8 LINE L1 4380 5269 -877 1179 137 155 0 chr6 82507866 82508154 -106771400 + MER7A DNA MER2_type 1 337 0 3724 164 25 6 chr6 82508154 82508848 -106770706 + L1MA8 LINE L1 5269 5975 -325 1536 211 22 28 chr6 82508848 82509209 -106770345 - THE1C LTR MaLR 0 375 17 1202 199 6 52 chr6 82509211 82509544 -106770010 + L1MA8 LINE L1 5981 6287 -4 5691 259 53 38 chr6 82509568 82511930 -106767624 + L1MC3 LINE L1 2569 4967 -1459 4843 54 11 2 chr6 82511942 82512622 -106766932 - L1PA6 LINE L1 -281 5873 5189 373 89 0 0 chr6 82512622 82512677 -106766877 + L1PA6 LINE L1 6098 6153 -1 4689 203 68 39 chr6 82512694 82514476 -106765078 + L1MC3 LINE L1 4976 5655 -771 968 130 48 43 chr6 82514498 82514705 -106764849 - MLT1A2 LTR MaLR -162 212 5 975 124 10 67 chr6 82514709 82514866 -106764688 + L1MC3 LINE L1 7248 7394 -671 2202 89 0 49 chr6 82514866 82515192 -106764362 + AluY SINE Alu 1 310 -1 975 124 10 67 chr6 82515192 82515227 -106764327 + L1MC3 LINE L1 7394 7429 -636 21 0 0 0 chr6 82515652 82515673 -106763881 + AT_rich Low_complexity Low_complexity 1 21 0 525 266 65 23 chr6 82516083 82516346 -106763208 - MER97c DNA MER1_type? -43 1047 774 23 0 0 0 chr6 82516490 82516513 -106763041 + AT_rich Low_complexity Low_complexity 1 23 0 1073 237 64 67 chr6 82516691 82517142 -106762412 - MER97b DNA MER1_type? -453 600 151 2058 229 37 20 chr6 82517213 82517703 -106761851 + LTR40a LTR ERVL 1 498 -21 193 133 0 0 chr6 82518879 82518909 -106760645 - L2 LINE L2 -17 3296 3267 21 57 0 0 chr6 82519040 82519075 -106760479 + AT_rich Low_complexity Low_complexity 1 35 0 290 342 35 26 chr6 82520154 82520268 -106759286 + L2 LINE L2 3147 3261 -11 426 287 134 58 chr6 82520333 82520507 -106759047 + L1ME LINE L1 4422 4581 -1565 186 43 0 0 chr6 82520507 82520530 -106759024 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 426 287 134 58 chr6 82520530 82521015 -106758539 + L1ME LINE L1 4581 5138 -1008 319 242 157 11 chr6 82521193 82521403 -106758151 + MLT1J1 LTR MaLR 3 217 -233 345 62 0 0 chr6 82521785 82521833 -106757721 + (TA)n Simple_repeat Simple_repeat 1 48 0 268 307 79 0 chr6 82521849 82521989 -106757565 + L1ME LINE L1 5609 5759 -362 22 0 0 0 chr6 82522056 82522078 -106757476 + AT_rich Low_complexity Low_complexity 1 22 0 2618 86 24 22 chr6 82522081 82522490 -106757064 - LTR7 LTR ERV1 -40 410 1 2298 85 50 13 chr6 82522490 82522866 -106756688 - HERVH LTR ERV1 0 7713 7324 1348 108 5 0 chr6 82522866 82523070 -106756484 - HERVH LTR ERV1 -1894 5819 5615 2824 124 18 1 chr6 82523115 82523718 -106755836 - HERVH LTR ERV1 -2564 5149 4488 7797 106 3 10 chr6 82523721 82525778 -106753776 - HERVH LTR ERV1 -3721 3992 1783 387 304 19 19 chr6 82526175 82526443 -106753111 + CT-rich Low_complexity Low_complexity 1 268 0 1532 116 8 0 chr6 82526505 82526755 -106752799 - HERVH LTR ERV1 -7461 252 1 702 67 0 19 chr6 82526758 82526862 -106752692 - LTR7 LTR ERV1 -2 448 347 1631 263 91 31 chr6 82527398 82527684 -106751870 - L1ME3A LINE L1 -7 6232 5965 2228 93 3 3 chr6 82527684 82527984 -106751570 - AluSc SINE Alu -9 300 1 1631 263 91 31 chr6 82527984 82528382 -106751172 - L1ME3A LINE L1 -274 5965 5507 306 213 0 0 chr6 82528370 82528450 -106751104 - L1ME3A LINE L1 -1587 4628 4549 * 762 269 9 77 chr6 82528588 82528938 -106750616 - L1ME3A LINE L1 -6033 363 38 364 241 9 45 chr6 82530136 82530248 -106749306 + MIR SINE MIR 40 147 -61 2231 213 73 75 chr6 82530263 82531189 -106748365 + MER63C DNA MER1_type 1 925 -5 2706 236 55 50 chr6 82533371 82534030 -106745524 + MER97c DNA MER1_type? 14 668 -422 2138 136 0 0 chr6 82534030 82534339 -106745215 + AluSx SINE Alu 1 309 -3 2706 236 55 50 chr6 82534339 82534551 -106745003 + MER97c DNA MER1_type? 668 893 -197 2162 118 0 13 chr6 82534551 82534855 -106744699 + AluSx SINE Alu 1 300 -12 2706 236 55 50 chr6 82534855 82534975 -106744579 + MER97c DNA MER1_type? 893 1011 -79 1211 239 128 0 chr6 82536378 82536729 -106742825 - MSTD LTR MaLR 0 396 1 215 358 0 0 chr6 82537599 82537666 -106741888 + L2 LINE L2 3002 3068 -204 292 272 11 65 chr6 82538813 82538905 -106740649 + MIR3 SINE MIR 101 187 -21 189 371 36 36 chr6 82540200 82540340 -106739214 + L2 LINE L2 2917 3056 -216 2116 269 137 27 chr6 82542086 82543363 -106736191 - HAL1 LINE L1 -7 2500 1015 424 290 82 84 chr6 82543363 82543767 -106735787 + MLT1I LTR MaLR 4 406 -3 2116 269 137 27 chr6 82543767 82544067 -106735487 - HAL1 LINE L1 -1492 1015 749 249 301 82 70 chr6 82544135 82544451 -106735103 - HAL1 LINE L1 -1874 633 314 195 351 119 40 chr6 82544998 82545249 -106734305 - L2 LINE L2 -480 2834 2564 279 308 164 34 chr6 82545642 82545850 -106733704 - L2 LINE L2 -778 2536 2302 2285 108 3 0 chr6 82545880 82546186 -106733368 - AluSx SINE Alu -5 307 1 296 291 89 19 chr6 82546253 82546411 -106733143 - L2 LINE L2 -1352 1962 1794 4007 259 59 15 chr6 82547733 82550157 -106729397 - L1ME1 LINE L1 -185 6050 3485 * 5223 271 57 18 chr6 82550156 82552585 -106726969 - L1ME1 LINE L1 -3679 2536 36 306 0 0 0 chr6 82553369 82553403 -106726151 + (T)n Simple_repeat Simple_repeat 1 34 0 1813 155 0 4 chr6 82553725 82554003 -106725551 + AluJb SINE Alu 11 287 -25 21 36 0 0 chr6 82554003 82554031 -106725523 + AT_rich Low_complexity Low_complexity 1 28 0 1811 182 7 0 chr6 82554170 82554456 -106725098 + AluJb SINE Alu 12 299 -13 249 108 0 0 chr6 82554856 82554893 -106724661 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 403 125 38 0 chr6 82554893 82554973 -106724581 - L1MB3 LINE L1 -7 6176 6094 3609 179 14 4 chr6 82554980 82555697 -106723857 - L1MA4 LINE L1 -279 6021 5298 1039 163 33 0 chr6 82555705 82555889 -106723665 - L1PA16 LINE L1 -9 6157 5968 2007 144 123 11 chr6 82555896 82556277 -106723277 - MSTA LTR MaLR 0 428 5 2589 178 37 2 chr6 82556286 82556768 -106722786 - MSTA-int LTR MaLR -6 1645 1147 * 3786 194 33 3 chr6 82556746 82557505 -106722049 - MSTA-int LTR MaLR -869 782 1 744 161 140 0 chr6 82557505 82557648 -106721906 - MSTA LTR MaLR 0 428 266 1782 205 7 81 chr6 82557657 82557768 -106721786 + L1M3f LINE L1 2 120 -5208 2219 124 0 0 chr6 82557768 82558059 -106721495 - AluY SINE Alu -20 291 1 1782 205 7 81 chr6 82558059 82558405 -106721149 + L1M3f LINE L1 120 425 -4903 4636 92 44 35 chr6 82558410 82559260 -106720294 + pTR5 LTR ERV1 270 2468 0 * 20157 98 33 7 chr6 82559260 82562243 -106717311 + HERV9 LTR ERV1 80 3139 -5260 6173 71 7 10 chr6 82562256 82563118 -106716436 + HERV9 LTR ERV1 4086 4944 -3455 1912 184 94 58 chr6 82563119 82564124 -106715430 + Harlequin LTR ERV1 840 1740 -5156 * 5366 99 4 0 chr6 82564122 82564889 -106714665 + Harlequin LTR ERV1 7626 8395 -4 4924 84 52 0 chr6 82564893 82565547 -106714007 + LTR12 LTR ERV1 1 688 0 753 217 86 77 chr6 82565547 82566026 -106713528 + L1M3f LINE L1 433 951 -4377 219 278 14 14 chr6 82566233 82566305 -106713249 + MIR3 SINE MIR 122 193 -15 3162 121 2 32 chr6 82566795 82567298 -106712256 - LTR22B LTR ERVK -4 488 1 1135 113 109 13 chr6 82569740 82569970 -106709584 - L1MA6 LINE L1 0 6300 6049 428 246 139 0 chr6 82570226 82570348 -106709206 + L2 LINE L2 3171 3309 -4 26 64 0 0 chr6 82570612 82570659 -106708895 + AT_rich Low_complexity Low_complexity 1 47 0 251 0 59 0 chr6 82570678 82570712 -106708842 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 5442 167 21 8 chr6 82570712 82572410 -106707144 - L1PB1 LINE L1 -10 6857 5136 310 333 0 0 chr6 82572527 82572617 -106706937 - L1MC4 LINE L1 -1339 6703 6614 9844 186 36 21 chr6 82572627 82576412 -106703142 - L1PB1 LINE L1 -1753 5109 1092 3245 242 81 6 chr6 82576415 82577382 -106702172 - L1PB1 LINE L1 -5819 1044 6 2370 118 28 3 chr6 82577939 82578294 -106701260 + THE1B LTR MaLR 1 364 0 621 330 21 21 chr6 82578312 82578548 -106701006 + MIR SINE MIR 6 241 -21 481 258 16 0 chr6 82578628 82578756 -106700798 - MER94 DNA DNA -4 130 1 374 237 15 53 chr6 82580168 82580299 -106699255 + MIR SINE MIR 67 192 -70 2007 134 69 29 chr6 82581399 82581749 -106697805 - THE1B LTR MaLR 0 364 1 226 344 83 39 chr6 82581817 82582047 -106697507 + L1MEd LINE L1 267 506 -5613 2740 244 35 6 chr6 82582147 82582840 -106696714 + L1M2c LINE L1 1271 1983 -4806 5692 33 4 4 chr6 82582840 82583537 -106696017 - L1PA4 LINE L1 0 6155 5459 2083 20 109 0 chr6 82583537 82583868 -106695686 + L1PA4 LINE L1 5109 5466 -689 * 10459 239 50 15 chr6 82583866 82584669 -106694885 + L1PA16 LINE L1 2402 3175 -4390 1966 131 0 3 chr6 82584669 82584980 -106694574 + AluY SINE Alu 1 310 0 10459 239 50 15 chr6 82584980 82587338 -106692216 + L1PA16 LINE L1 3175 5741 -1824 207 0 0 0 chr6 82587338 82587361 -106692193 + (CA)n Simple_repeat Simple_repeat 1 23 0 10459 239 50 15 chr6 82587361 82588126 -106691428 + L1PA16 LINE L1 5741 6478 -1087 24 0 0 0 chr6 82588126 82588150 -106691404 + AT_rich Low_complexity Low_complexity 1 24 0 433 269 63 12 chr6 82588153 82588406 -106691148 + L1M2c LINE L1 3578 3843 -2945 631 288 50 67 chr6 82588408 82588904 -106690650 + L1ME3A LINE L1 5476 5963 -207 12040 48 3 0 chr6 82589135 82591397 -106688157 - L1PA5 LINE L1 -3 6151 3885 24 0 0 0 chr6 82591437 82591461 -106688093 + AT_rich Low_complexity Low_complexity 1 24 0 406 326 69 85 chr6 82591702 82592138 -106687416 + L2 LINE L2 2544 2972 -342 288 199 0 30 chr6 82592203 82592304 -106687250 + L1P4 LINE L1 5350 5443 -722 4679 144 32 1 chr6 82592307 82593206 -106686348 + L1PA16 LINE L1 6524 7447 -138 186 343 48 41 chr6 82593553 82593699 -106685855 + L2 LINE L2 2914 3060 -212 1950 164 19 24 chr6 82594065 82594438 -106685116 - THE1C LTR MaLR 0 375 5 21 0 0 0 chr6 82594977 82594998 -106684556 + AT_rich Low_complexity Low_complexity 1 21 0 1035 179 144 47 chr6 82594998 82595317 -106684237 - MER106B DNA MER1_type -20 1039 690 1483 348 9 26 chr6 82595915 82596564 -106682990 - ERVL LTR ERVL -1067 4697 4060 267 316 13 0 chr6 82596870 82596949 -106682605 - MER116 DNA Mariner 0 80 1 27 29 0 0 chr6 82596949 82596983 -106682571 + AT_rich Low_complexity Low_complexity 1 34 0 349 287 161 11 chr6 82596992 82597278 -106682276 + L1M4 LINE L1 2813 3141 -3005 182 192 19 0 chr6 82597353 82597405 -106682149 + (TA)n Simple_repeat Simple_repeat 1 53 0 2221 92 0 7 chr6 82597547 82597842 -106681712 + AluY SINE Alu 1 293 -18 3182 276 103 12 chr6 82597842 82599381 -106680173 - L1MCc LINE L1 -1822 5119 3441 2182 98 3 7 chr6 82599383 82599679 -106679875 + AluY SINE Alu 3 297 -14 217 116 47 0 chr6 82599682 82599725 -106679829 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 22 35 0 0 chr6 82599742 82599771 -106679783 + AT_rich Low_complexity Low_complexity 1 29 0 36 0 0 0 chr6 82599864 82599900 -106679654 + AT_rich Low_complexity Low_complexity 1 36 0 42078 39 23 1 chr6 82599911 82605930 -106673624 - L1PA3 LINE L1 0 6155 2 2407 282 58 27 chr6 82605978 82608316 -106671238 - L1MCc LINE L1 -3516 3425 823 1133 156 88 105 chr6 82608316 82608611 -106670943 - AluJb SINE Alu -12 290 1 2407 282 58 27 chr6 82608611 82608628 -106670926 - L1MCc LINE L1 -6118 823 808 730 312 239 28 chr6 82609473 82610152 -106669402 + L3 LINE CR1 30 851 -726 904 202 25 10 chr6 82610479 82610677 -106668877 + MER58 DNA MER1_type 1 201 -2219 395 309 137 23 chr6 82610963 82611219 -106668335 + L2 LINE L2 3028 3312 -1 247 173 0 0 chr6 82612534 82612586 -106666968 + L1MC4 LINE L1 6652 6703 -1339 229 268 28 0 chr6 82612587 82612658 -106666896 + (TA)n Simple_repeat Simple_repeat 1 73 0 4742 162 22 12 chr6 82612801 82613657 -106665897 - L1MB4 LINE L1 -1 6179 5315 9989 224 38 20 chr6 82613660 82617541 -106662013 - L1MC1 LINE L1 -5 6608 2655 2970 182 28 76 chr6 82617553 82618274 -106661280 - L1MC1 LINE L1 -5740 686 1 950 232 68 0 chr6 82620256 82620463 -106659091 + MER58A DNA MER1_type 4 224 0 194 346 26 39 chr6 82620899 82620977 -106658577 + L2 LINE L2 1132 1208 -2106 364 350 63 60 chr6 82621451 82621751 -106657803 + L2 LINE L2 2971 3271 -1 28 48 0 0 chr6 82622370 82622412 -106657142 + AT_rich Low_complexity Low_complexity 1 42 0 1043 145 41 72 chr6 82622982 82623203 -106656351 + MER20 DNA MER1_type 2 215 -4 240 214 60 12 chr6 82623333 82623417 -106656137 - L1ME4a LINE L1 -43 6078 5991 329 284 54 15 chr6 82624189 82624393 -106655161 - L1ME4a LINE L1 -197 5924 5713 1202 186 42 108 chr6 82624491 82624872 -106654682 - L1MB8 LINE L1 -4 6174 5819 1206 145 24 63 chr6 82624945 82625200 -106654354 - L1PA15 LINE L1 0 6165 5921 1495 222 153 20 chr6 82625782 82626228 -106653326 + MLT1D LTR MaLR 1 505 0 416 318 46 20 chr6 82626574 82626725 -106652829 + MIR SINE MIR 37 191 -71 644 293 71 40 chr6 82627512 82627836 -106651718 + L2 LINE L2 2980 3313 0 255 264 56 103 chr6 82628743 82629084 -106650470 - MLT1J LTR MaLR -161 350 26 2307 71 0 7 chr6 82629401 82629696 -106649858 + AluY SINE Alu 1 293 -18 2972 270 100 11 chr6 82629696 82631238 -106648316 - L1M4 LINE L1 -1822 4506 2828 2224 98 3 7 chr6 82631240 82631536 -106648018 + AluY SINE Alu 3 297 -14 217 116 47 0 chr6 82631539 82631582 -106647972 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 22 35 0 0 chr6 82631599 82631628 -106647926 + AT_rich Low_complexity Low_complexity 1 29 0 36 0 0 0 chr6 82631721 82631757 -106647797 + AT_rich Low_complexity Low_complexity 1 36 0 32499 33 2 0 chr6 82631768 82636667 -106642887 - L1PA3 LINE L1 0 6155 1246 2336 228 44 77 chr6 82636769 82637162 -106642392 - L1M4 LINE L1 -4498 830 426 4899 86 52 0 chr6 82637162 82637816 -106641738 - LTR12 LTR ERV1 0 688 1 2336 228 44 77 chr6 82637816 82638167 -106641387 - L1M4 LINE L1 -4902 426 115 2219 124 0 0 chr6 82638167 82638458 -106641096 + AluY SINE Alu 1 291 -20 2336 228 44 77 chr6 82638458 82638569 -106640985 - L1M4 LINE L1 -5213 115 2 744 161 140 0 chr6 82638578 82638721 -106640833 + MSTA LTR MaLR 266 428 0 3786 194 33 3 chr6 82638721 82639480 -106640074 + THE1C-int LTR MaLR 1 782 -869 2576 183 37 0 chr6 82639458 82639939 -106639615 + THE1C-int LTR MaLR 1147 1645 -6 * 2958 262 34 12 chr6 82640051 82640725 -106638829 - L1MCb LINE L1 -2697 3867 3156 2801 6 0 10 chr6 82640725 82641036 -106638518 - AluY SINE Alu -3 308 1 2958 262 34 12 chr6 82641036 82641497 -106638057 - L1MCb LINE L1 -3408 3156 2707 1118 192 7 55 chr6 82641521 82641829 -106637725 - L1MA8 LINE L1 -4 6287 5995 1441 210 31 25 chr6 82641856 82642213 -106637341 + THE1C LTR MaLR 17 375 0 3537 161 25 6 chr6 82642213 82642907 -106636647 - L1MA8 LINE L1 -325 5975 5269 1107 114 212 0 chr6 82642933 82643195 -106636359 - MER7A DNA MER2_type -26 311 1 4158 177 11 19 chr6 82643195 82644092 -106635462 - L1MA8 LINE L1 -877 5269 4380 3628 233 113 67 chr6 82644124 82646496 -106633058 - L1MCb LINE L1 -3892 2672 1 1574 189 25 4 chr6 82647635 82647916 -106631638 + AluJo SINE Alu 1 287 -25 227 336 74 8 chr6 82648410 82648532 -106631022 + L2 LINE L2 2688 2817 -497 394 239 0 0 chr6 82648579 82648667 -106630887 + MER3 DNA MER1_type 2 89 -120 * 673 208 156 0 chr6 82648631 82648804 -106630750 - MER3 DNA MER1_type -6 203 4 252 327 168 0 chr6 82649019 82649132 -106630422 + L2 LINE L2 3141 3272 0 291 332 144 19 chr6 82649244 82649563 -106629991 - L2 LINE L2 -955 2359 2001 1172 201 139 36 chr6 82649698 82650057 -106629497 + MSTD LTR MaLR 1 396 0 636 295 23 37 chr6 82650241 82650458 -106629096 - LTR16A LTR ERVL -2 448 235 1735 316 18 18 chr6 82650581 82651262 -106628292 - HERV16 LTR ERVL -3574 1422 742 1484 335 23 23 chr6 82651304 82651587 -106627967 - HERV16 LTR ERVL -4332 664 382 897 192 73 127 chr6 82651587 82651982 -106627572 - MLT1A2 LTR MaLR 0 374 1 1484 335 23 23 chr6 82651982 82652357 -106627197 - HERV16 LTR ERVL -4613 383 6 475 290 80 42 chr6 82652362 82652624 -106626930 - LTR16A LTR ERVL 0 450 179 3007 229 40 40 chr6 82653395 82653569 -106625985 - L1MD2 LINE L1 -10 6349 6176 2006 128 4 0 chr6 82653569 82653894 -106625660 - AluSx SINE Alu 0 326 1 3007 229 40 40 chr6 82653894 82654674 -106624880 - L1MD2 LINE L1 -182 6177 5394 384 299 71 15 chr6 82654974 82655152 -106624402 - MIR SINE MIR -14 194 3 1652 233 22 0 chr6 82655659 82656016 -106623538 + MLT1A1 LTR MaLR 1 365 0 327 308 153 40 chr6 82656477 82656903 -106622651 - L2 LINE L2 -2418 896 423 198 257 99 20 chr6 82656945 82657046 -106622508 + MIR SINE MIR 144 252 -10 315 361 46 8 chr6 82657087 82657217 -106622337 - MIR SINE MIR -57 151 17 30 27 0 0 chr6 82657428 82657465 -106622089 + AT_rich Low_complexity Low_complexity 1 37 0 683 167 9 0 chr6 82657715 82657829 -106621725 + FLAM_C SINE Alu 2 116 -17 402 21 0 0 chr6 82657830 82657877 -106621677 + (CATA)n Simple_repeat Simple_repeat 2 48 0 540 226 23 15 chr6 82658517 82658650 -106620904 + MER94 DNA DNA 1 134 0 203 146 24 0 chr6 82659175 82659216 -106620338 + (ATG)n Simple_repeat Simple_repeat 3 44 0 747 305 113 35 chr6 82659220 82659876 -106619678 + L2 LINE L2 2358 3065 -248 957 204 0 78 chr6 82660000 82660231 -106619323 - MER58A DNA MER1_type 0 224 12 232 326 98 0 chr6 82660243 82660335 -106619219 + L2 LINE L2 3213 3313 0 337 321 22 7 chr6 82660350 82660487 -106619067 - MIR SINE MIR -46 216 78 1047 209 44 82 chr6 82660488 82660876 -106618678 - MLT1C LTR MaLR 0 467 95 272 265 0 0 chr6 82661376 82661444 -106618110 + MER103 DNA DNA 1 68 -98 222 205 0 0 chr6 82661738 82661777 -106617777 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 1833 166 31 43 chr6 82661909 82662300 -106617254 + MLT1B LTR MaLR 1 386 -4 227 333 81 0 chr6 82662421 82662520 -106617034 + L2 LINE L2 3190 3296 -17 440 266 58 7 chr6 82662635 82662774 -106616780 - MIR SINE MIR -49 213 68 587 308 110 44 chr6 82662777 82663212 -106616342 + L3 LINE CR1 851 1314 -263 285 288 212 0 chr6 82663213 82663331 -106616223 + L3 LINE CR1 1430 1572 -5 6365 75 23 9 chr6 82663416 82664413 -106615141 + L1PA10 LINE L1 5160 6167 -1 405 0 0 0 chr6 82664993 82665038 -106614516 + (TG)n Simple_repeat Simple_repeat 2 46 0 320 43 22 0 chr6 82665590 82665636 -106613918 + (CCCCAG)n Simple_repeat Simple_repeat 6 52 0 28 86 0 0 chr6 82665698 82665768 -106613786 + GC_rich Low_complexity Low_complexity 1 70 0 258 179 0 0 chr6 82665859 82665915 -106613639 + (CTG)n Simple_repeat Simple_repeat 2 57 0 180 125 0 0 chr6 82667959 82667991 -106611563 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 243 0 0 0 chr6 82669562 82669589 -106609965 + (A)n Simple_repeat Simple_repeat 1 27 0 245 289 67 22 chr6 82670169 82670259 -106609295 + MIR SINE MIR 6 99 -163 184 356 67 10 chr6 82671054 82671158 -106608396 - MIR3 SINE MIR -88 120 11 187 328 15 0 chr6 82671219 82671286 -106608268 - MIR SINE MIR -6 256 189 2094 131 0 3 chr6 82673154 82673452 -106606102 + AluSx SINE Alu 1 297 -15 2377 94 3 0 chr6 82674384 82674692 -106604862 + AluSx SINE Alu 1 309 -3 550 367 176 15 chr6 82675709 82676387 -106603167 + L2 LINE L2 1994 2780 -534 316 412 115 14 chr6 82676507 82676786 -106602768 + L2 LINE L2 2941 3247 -25 264 59 0 0 chr6 82676802 82676836 -106602718 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 280 196 314 0 chr6 82677607 82677709 -106601845 - MER117 DNA MER1_type -43 154 21 284 276 118 47 chr6 82677740 82677867 -106601687 - MIR3 SINE MIR -67 141 6 28 0 0 0 chr6 82678165 82678193 -106601361 + AT_rich Low_complexity Low_complexity 1 28 0 228 35 0 0 chr6 82678467 82678496 -106601058 + (CA)n Simple_repeat Simple_repeat 2 30 0 1008 331 127 36 chr6 82679103 82680050 -106599504 - L2 LINE L2 -228 3044 1991 2575 228 21 48 chr6 82680056 82680784 -106598770 + L1ME2 LINE L1 5451 6158 -6 566 314 66 26 chr6 82680792 82681063 -106598491 - L2 LINE L2 -1345 1969 1688 335 260 106 0 chr6 82681180 82681303 -106598251 - L2 LINE L2 -1888 1426 1291 5837 99 25 4 chr6 82681522 82682367 -106597187 - L1PA10 LINE L1 0 6168 5306 1856 136 0 0 chr6 82682367 82682662 -106596892 + L1PA10 LINE L1 5014 5308 -838 247 143 24 0 chr6 82682685 82682727 -106596827 + MLT1K LTR MaLR 538 580 -8 928 274 175 11 chr6 82683214 82683586 -106595968 - LTR16A LTR ERVL 0 450 18 26 0 0 0 chr6 82684546 82684572 -106594982 + AT_rich Low_complexity Low_complexity 1 26 0 275 233 88 119 chr6 82685359 82685518 -106594036 - MIR SINE MIR -50 212 59 344 299 67 22 chr6 82685631 82685765 -106593789 + MIR SINE MIR 8 147 -115 22 35 0 0 chr6 82686560 82686589 -106592965 + AT_rich Low_complexity Low_complexity 1 29 0 1838 133 3 25 chr6 82687975 82688260 -106591294 - AluSq SINE Alu -6 307 29 183 42 0 0 chr6 82688560 82688584 -106590970 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr6 82689249 82689271 -106590283 + AT_rich Low_complexity Low_complexity 1 22 0 217 139 93 0 chr6 82691706 82691749 -106587805 - L2 LINE L2 -5 3308 3262 182 114 0 57 chr6 82692986 82693021 -106586533 + L3b LINE CR1 1279 1311 -272 188 294 59 0 chr6 82693929 82693980 -106585574 + L2 LINE L2 3215 3268 -4 402 175 210 126 chr6 82694583 82694726 -106584828 + MIR SINE MIR 87 241 -21 2819 88 0 0 chr6 82694726 82695090 -106584464 - THE1B LTR MaLR 0 364 1 268 252 234 0 chr6 82695863 82695970 -106583584 - L2 LINE L2 0 3313 3182 820 196 65 5 chr6 82696033 82696217 -106583337 + MIR SINE MIR 66 260 -2 2751 309 81 26 chr6 82696241 82697838 -106581716 - L2 LINE L2 -185 3128 1452 485 329 74 71 chr6 82698288 82698947 -106580607 - L2 LINE L2 -737 2577 1917 1219 146 55 16 chr6 82699304 82699558 -106579996 + L1MD3 LINE L1 7732 7995 0 2157 78 30 0 chr6 82700200 82700492 -106579062 - AluSg SINE Alu 0 304 5 1367 197 13 3 chr6 82701216 82701516 -106578038 - L1MB4 LINE L1 0 6180 5878 705 165 0 0 chr6 82701517 82701638 -106577916 + AluJb SINE Alu 183 303 -9 430 173 0 0 chr6 82701639 82701714 -106577840 - L1MB4 LINE L1 -303 5871 5797 219 186 0 0 chr6 82701751 82701794 -106577760 + GA-rich Low_complexity Low_complexity 3 45 0 2181 101 14 0 chr6 82702645 82702941 -106576613 - AluSp SINE Alu -13 300 1 1709 174 0 41 chr6 82703591 82703907 -106575647 + AluJb SINE Alu 3 305 -7 486 192 61 27 chr6 82704978 82705109 -106574445 - L1ME3A LINE L1 -8 6162 6029 301 158 0 0 chr6 82705142 82705199 -106574355 - AluSc SINE Alu 0 299 243 845 92 0 0 chr6 82705199 82705308 -106574246 - AluSc SINE Alu -200 109 1 242 294 71 0 chr6 82706019 82706104 -106573450 - MIR SINE MIR -170 92 2 23 68 0 0 chr6 82706862 82706906 -106572648 + AT_rich Low_complexity Low_complexity 1 44 0 569 245 197 0 chr6 82707782 82707929 -106571625 + MER5B DNA MER1_type 3 178 0 249 328 58 21 chr6 82708155 82708344 -106571210 + L2 LINE L2 3096 3291 -22 22 35 0 0 chr6 82709387 82709416 -106570138 + AT_rich Low_complexity Low_complexity 1 29 0 312 264 220 19 chr6 82709529 82709688 -106569866 - MIR3 SINE MIR -3 205 15 1711 151 6 4 chr6 82710607 82710922 -106568632 - L1PA13 LINE L1 -789 5357 5057 * 5616 94 4 5 chr6 82710920 82711714 -106567840 + L1PA13 LINE L1 5362 6154 -9 521 171 0 99 chr6 82711725 82711836 -106567718 - FLAM_A SINE Alu -26 116 17 440 220 0 68 chr6 82712009 82712127 -106567427 - L2 LINE L2 -15 3298 3189 239 253 10 81 chr6 82712429 82712528 -106567026 + L2 LINE L2 3218 3309 -4 324 0 0 0 chr6 82712760 82712796 -106566758 + (CA)n Simple_repeat Simple_repeat 1 36 0 31 26 0 0 chr6 82712944 82712982 -106566572 + AT_rich Low_complexity Low_complexity 1 38 0 2489 10 80 0 chr6 82715146 82715434 -106564120 + AluY SINE Alu 1 311 0 654 181 228 124 chr6 82716229 82716350 -106563204 - MSTC LTR MaLR 0 428 321 1656 189 29 0 chr6 82716350 82716630 -106562924 - AluJb SINE Alu -24 288 1 654 181 228 124 chr6 82716630 82716894 -106562660 - MSTC LTR MaLR -107 321 3 6344 229 78 30 chr6 82716896 82718550 -106561004 - MSTD-int LTR MaLR 0 1735 2 1269 237 107 14 chr6 82718554 82718908 -106560646 - MSTD LTR MaLR -2 394 8 566 297 54 22 chr6 82718984 82719206 -106560348 + MIR SINE MIR 34 262 0 2420 175 11 45 chr6 82719600 82720132 -106559422 - MER67D LTR ERV1 0 514 1 27 73 0 0 chr6 82720259 82720314 -106559240 + AT_rich Low_complexity Low_complexity 1 55 0 27 29 0 0 chr6 82721960 82721994 -106557560 + AT_rich Low_complexity Low_complexity 1 34 0 990 303 55 33 chr6 82724129 82724584 -106554970 - LTR33 LTR ERVL 0 521 57 7032 159 53 6 chr6 82724588 82724829 -106554725 + L1MA8 LINE L1 3984 4212 -2060 1504 102 0 5 chr6 82724829 82725026 -106554528 - AluSq SINE Alu -15 298 103 7032 159 53 6 chr6 82725026 82726253 -106553301 + L1MA8 LINE L1 4212 5529 -743 3302 159 42 6 chr6 82726258 82726905 -106552649 + L1MA8 LINE L1 5622 6291 0 221 169 15 46 chr6 82726919 82726984 -106552570 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 743 319 64 20 chr6 82727317 82727615 -106551939 + MLT1I LTR MaLR 9 319 -90 321 246 169 0 chr6 82727634 82727752 -106551802 + MIR SINE MIR 125 262 0 265 345 115 14 chr6 82728539 82728687 -106550867 + MIR SINE MIR 33 195 -67 2890 209 23 15 chr6 82728811 82729463 -106550091 + L1ME1 LINE L1 5510 6166 0 1635 141 3 88 chr6 82730545 82730885 -106548669 - AluJo SINE Alu -1 311 1 513 215 47 9 chr6 82731408 82731515 -106548039 - L2 LINE L2 0 3313 3203 358 227 192 69 chr6 82731846 82732054 -106547500 - MLT1H LTR MaLR -100 449 187 2032 139 0 7 chr6 82732054 82732364 -106547190 - AluSx SINE Alu -2 310 3 358 227 192 69 chr6 82732364 82732472 -106547082 - MLT1H LTR MaLR -362 187 94 457 239 9 0 chr6 82733793 82733906 -106545648 - L1ME2 LINE L1 -9 6155 6042 359 21 21 0 chr6 82733924 82733972 -106545582 + (CA)n Simple_repeat Simple_repeat 1 49 0 1041 228 86 64 chr6 82733972 82734250 -106545304 - L1ME2 LINE L1 -175 5989 5700 2245 105 0 0 chr6 82734250 82734544 -106545010 - AluSx SINE Alu -18 294 1 1041 228 86 64 chr6 82734544 82734638 -106544916 - L1ME2 LINE L1 -464 5700 5609 233 182 0 45 chr6 82734641 82734707 -106544847 - L1ME2 LINE L1 -848 5298 5236 217 140 60 0 chr6 82734709 82734759 -106544795 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 308 241 80 27 chr6 82734759 82734871 -106544683 - L1ME2 LINE L1 -902 5244 5127 315 270 98 81 chr6 82735897 82736071 -106543483 - MER5B DNA MER1_type 0 178 2 461 338 78 40 chr6 82736193 82736566 -106542988 + L3 LINE CR1 1087 1473 -104 23 0 0 0 chr6 82736749 82736772 -106542782 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 82736846 82736868 -106542686 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr6 82736956 82736989 -106542565 + AT_rich Low_complexity Low_complexity 1 33 0 463 212 61 0 chr6 82737115 82737214 -106542340 + MIR SINE MIR 158 262 0 228 267 10 50 chr6 82740408 82740509 -106539045 + CT-rich Low_complexity Low_complexity 1 97 0 264 30 0 0 chr6 82740806 82740839 -106538715 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 21 57 0 0 chr6 82741737 82741772 -106537782 + AT_rich Low_complexity Low_complexity 1 35 0 184 378 38 38 chr6 82742285 82742470 -106537084 + MIR SINE MIR 11 195 -67 31 0 0 0 chr6 82742818 82742849 -106536705 + AT_rich Low_complexity Low_complexity 1 31 0 1642 313 83 27 chr6 82742969 82743995 -106535559 - L2 LINE L2 -1 3312 2132 21 71 0 0 chr6 82745414 82745456 -106534098 + AT_rich Low_complexity Low_complexity 1 42 0 1981 133 10 7 chr6 82745597 82745898 -106533656 - AluSx SINE Alu -9 303 2 2479 74 0 0 chr6 82746184 82746483 -106533071 + AluY SINE Alu 1 299 -12 2200 129 0 0 chr6 82748604 82748913 -106530641 + AluSx SINE Alu 1 309 -3 246 218 73 65 chr6 82750014 82750138 -106529416 - MER112 DNA MER1_type -1 259 135 602 359 157 26 chr6 82750335 82750636 -106528918 - L2 LINE L2 -639 2675 2415 2147 128 73 12 chr6 82750636 82750979 -106528575 - THE1B LTR MaLR 0 364 1 602 359 157 26 chr6 82750979 82751522 -106528032 - L2 LINE L2 -899 2415 1720 2274 92 20 0 chr6 82751990 82752283 -106527271 - AluSg SINE Alu -9 301 3 4921 166 25 16 chr6 82752437 82753328 -106526226 + MER54A LTR ERVL 3 901 0 281 269 0 0 chr6 82753328 82753406 -106526148 + (TG)n Simple_repeat Simple_repeat 2 79 0 537 109 0 40 chr6 82754033 82754134 -106525420 + L1PB1 LINE L1 6052 6148 -3 514 234 9 9 chr6 82754343 82754450 -106525104 - MER81 DNA DNA -7 107 1 3984 173 34 58 chr6 82754654 82755854 -106523700 - L1MB7 LINE L1 -19 6165 4969 627 308 156 34 chr6 82756464 82757114 -106522440 - L2 LINE L2 0 3313 2561 22 35 0 0 chr6 82757470 82757499 -106522055 + AT_rich Low_complexity Low_complexity 1 29 0 219 139 0 0 chr6 82758277 82758313 -106521241 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 471 276 110 0 chr6 82760268 82760413 -106519141 - MIR SINE MIR -28 234 74 238 379 14 21 chr6 82761600 82761745 -106517809 + L2 LINE L2 2381 2524 -790 527 130 22 14 chr6 82763803 82763941 -106515613 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 921 199 144 98 chr6 82764072 82764181 -106515373 - MER63B DNA MER1_type -626 436 333 1633 176 3 25 chr6 82764181 82764465 -106515089 + AluJo SINE Alu 3 280 -32 227 93 23 0 chr6 82764465 82764508 -106515046 + (TAAAA)n Simple_repeat Simple_repeat 1 44 0 921 199 144 98 chr6 82764508 82764814 -106514740 - MER63B DNA MER1_type -728 334 1 555 192 51 19 chr6 82765078 82765234 -106514320 + MER53 DNA DNA 1 161 -28 21 0 0 0 chr6 82765268 82765289 -106514265 + AT_rich Low_complexity Low_complexity 1 21 0 334 319 63 54 chr6 82765480 82765797 -106513757 - L2 LINE L2 -663 2651 2332 1514 184 36 39 chr6 82766293 82766657 -106512897 - MLT1A1 LTR MaLR -2 363 1 306 285 146 20 chr6 82767541 82767692 -106511862 + L1ME LINE L1 5614 5783 -338 22 0 0 0 chr6 82767868 82767890 -106511664 + AT_rich Low_complexity Low_complexity 1 22 0 243 196 87 0 chr6 82768324 82768370 -106511184 + L2 LINE L2 3216 3265 -7 420 291 9 9 chr6 82768752 82768862 -106510692 - L2 LINE L2 0 3313 3204 2302 100 3 3 chr6 82770859 82771169 -106508385 + AluSq SINE Alu 1 310 -3 282 355 0 48 chr6 82771189 82771313 -106508241 - MIR3 SINE MIR -15 193 76 735 140 33 0 chr6 82771434 82771584 -106507970 + CT-rich Low_complexity Low_complexity 4 158 0 1650 192 0 26 chr6 82771548 82772038 -106507516 - AluJb SINE Alu 0 482 1 417 131 0 0 chr6 82774529 82774613 -106504941 + (TG)n Simple_repeat Simple_repeat 2 85 0 686 212 101 118 chr6 82774642 82774874 -106504680 - MLT1B LTR MaLR 0 390 166 1865 142 25 0 chr6 82774874 82775155 -106504399 - AluSx SINE Alu -22 290 3 686 212 101 118 chr6 82775155 82775319 -106504235 - MLT1B LTR MaLR -224 166 1 577 320 69 45 chr6 82777341 82777675 -106501879 + L2 LINE L2 2967 3308 -5 250 333 35 35 chr6 82778293 82778437 -106501117 - L1M4 LINE L1 -1947 4199 4056 223 258 15 45 chr6 82782416 82782482 -106497072 + L2 LINE L2 3153 3216 -56 291 93 0 0 chr6 82782493 82782536 -106497018 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 324 64 0 0 chr6 82782679 82782726 -106496828 + (TG)n Simple_repeat Simple_repeat 1 47 0 7606 29 0 0 chr6 82782946 82784502 -106495052 - L1PA3 LINE L1 0 6155 4600 1411 207 16 38 chr6 82784989 82785361 -106494193 - MLT1A1 LTR MaLR -1 364 1 42555 55 2 1 chr6 82785421 82791565 -106487989 + L1PA4 LINE L1 1 6150 -5 315 372 78 22 chr6 82791633 82791902 -106487652 - L2 LINE L2 -344 2970 2687 215 344 60 38 chr6 82792025 82792208 -106487346 + MIR3 SINE MIR 17 203 -5 21 0 0 0 chr6 82792356 82792377 -106487177 + AT_rich Low_complexity Low_complexity 1 21 0 4225 173 45 35 chr6 82792782 82793094 -106486460 - L1MB7 LINE L1 -1 6681 6374 2548 92 25 5 chr6 82793094 82793462 -106486092 - THE1C LTR MaLR 0 375 1 4225 173 45 35 chr6 82793462 82794042 -106485512 - L1MB7 LINE L1 -308 6374 5780 1879 263 54 17 chr6 82794037 82794069 -106485485 - L1MB7 LINE L1 -1788 4856 4827 * 2178 143 6 0 chr6 82794069 82794427 -106485127 - MER46B DNA MER2_type -1 235 1 1879 263 54 17 chr6 82794427 82794722 -106484832 - L1MB7 LINE L1 -1817 4827 4544 2427 68 0 0 chr6 82794722 82795016 -106484538 + AluY SINE Alu 1 294 -17 1879 263 54 17 chr6 82795016 82795376 -106484178 - L1MB7 LINE L1 -2100 4544 4143 330 211 10 0 chr6 82795371 82795475 -106484079 - L1MB7 LINE L1 -2969 3675 3571 * 907 237 21 13 chr6 82795529 82795765 -106483789 - L1MB7 LINE L1 -6281 261 24 2296 291 160 35 chr6 82796645 82797889 -106481665 - L2 LINE L2 -1 3312 1898 223 296 194 10 chr6 82799073 82799171 -106480383 + MIR SINE MIR 21 136 -72 906 277 81 58 chr6 82800667 82801151 -106478403 - MLT1J LTR MaLR -1 510 16 506 257 108 7 chr6 82803440 82803588 -106475966 + MIR SINE MIR 97 259 -3 194 289 87 115 chr6 82803872 82803976 -106475578 - MIR SINE MIR -81 127 27 2164 106 10 0 chr6 82803978 82804280 -106475274 - AluSx SINE Alu -7 305 1 199 256 211 11 chr6 82804424 82804514 -106475040 - MIR3 SINE MIR -95 113 6 1897 267 30 17 chr6 82804726 82805261 -106474293 - MLT1F LTR MaLR 0 542 1 21 0 0 0 chr6 82807459 82807480 -106472074 + AT_rich Low_complexity Low_complexity 1 21 0 1485 179 113 15 chr6 82808412 82808741 -106470813 + MLT1A1 LTR MaLR 4 364 -1 512 200 174 13 chr6 82809201 82809356 -106470198 - MER5A DNA MER1_type 0 189 10 280 284 0 0 chr6 82811205 82811286 -106468268 + (TG)n Simple_repeat Simple_repeat 1 81 0 219 350 30 20 chr6 82812077 82812177 -106467377 - L2 LINE L2 -216 3056 2956 2186 104 0 10 chr6 82812560 82812859 -106466695 - AluSq SINE Alu -17 296 1 23 0 0 0 chr6 82812970 82812993 -106466561 + AT_rich Low_complexity Low_complexity 1 23 0 584 117 47 178 chr6 82813219 82813433 -106466121 - MER53 DNA DNA -3 186 1 278 331 96 42 chr6 82813721 82813887 -106465667 - MIR3 SINE MIR -5 203 29 680 275 54 18 chr6 82814101 82814323 -106465231 + MIR SINE MIR 33 262 0 213 324 0 0 chr6 82815438 82815509 -106464045 + (TTCA)n Simple_repeat Simple_repeat 4 74 0 192 219 266 0 chr6 82815740 82815804 -106463750 + L2 LINE L2 3191 3271 -1 975 105 6 55 chr6 82816590 82816771 -106462783 - L1MA10 LINE L1 0 6334 6163 252 0 0 0 chr6 82817168 82817196 -106462358 + (A)n Simple_repeat Simple_repeat 1 28 0 315 0 0 0 chr6 82817196 82817231 -106462323 + (TA)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr6 82819150 82819172 -106460382 + AT_rich Low_complexity Low_complexity 1 22 0 247 347 48 24 chr6 82819172 82819296 -106460258 + MIR3 SINE MIR 67 193 -15 225 239 134 15 chr6 82819504 82819571 -106459983 - MIR3 SINE MIR -47 161 87 27 49 0 0 chr6 82819942 82819983 -106459571 + AT_rich Low_complexity Low_complexity 1 41 0 661 273 50 38 chr6 82820822 82821060 -106458494 - MIR SINE MIR -15 247 7 328 224 68 34 chr6 82821537 82821684 -106457870 - L1ME4a LINE L1 -245 5876 5725 225 0 0 0 chr6 82822233 82822258 -106457296 + (CA)n Simple_repeat Simple_repeat 1 25 0 31 26 0 0 chr6 82823073 82823111 -106456443 + AT_rich Low_complexity Low_complexity 1 38 0 3191 221 84 13 chr6 82823230 82824393 -106455161 + L1ME1 LINE L1 4915 6156 -10 334 235 47 0 chr6 82824556 82824641 -106454913 + L1ME1 LINE L1 5976 6064 -102 25 31 0 0 chr6 82824928 82824960 -106454594 + AT_rich Low_complexity Low_complexity 1 32 0 392 346 43 35 chr6 82825019 82825276 -106454278 - L1ME4a LINE L1 -2280 5528 5270 25 0 0 0 chr6 82826351 82826376 -106453178 + AT_rich Low_complexity Low_complexity 1 25 0 442 267 96 7 chr6 82827365 82827500 -106452054 - L2 LINE L2 0 3313 3167 467 254 18 9 chr6 82830790 82830904 -106448650 - MIR SINE MIR -135 127 13 378 280 153 37 chr6 82831935 82832124 -106447430 + MIR SINE MIR 3 213 -49 6471 87 11 2 chr6 82833296 82834497 -106445057 - L1PA8 LINE L1 0 6172 4967 425 324 68 0 chr6 82834622 82834798 -106444756 - MIR SINE MIR 0 262 75 1212 180 5 0 chr6 82834833 82835055 -106444499 - L1P LINE L1 -1933 4213 3991 5174 117 4 3 chr6 82835056 82835814 -106443740 + L1PA15 LINE L1 5398 6156 -9 1223 70 41 0 chr6 82836395 82836567 -106442987 + L1PA13 LINE L1 5982 6160 -3 2516 74 0 0 chr6 82836883 82837194 -106442360 - AluY SINE Alu 0 311 1 1755 169 0 13 chr6 82838608 82838916 -106440638 - AluJb SINE Alu -8 304 1 294 291 94 16 chr6 82839175 82839302 -106440252 + Charlie8 DNA MER1_type 75 211 -2206 2308 88 0 31 chr6 82839319 82839498 -106440056 - AluSp SINE Alu -6 307 141 189 0 0 0 chr6 82839498 82839519 -106440035 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2308 88 0 31 chr6 82839519 82839656 -106439898 - AluSp SINE Alu -172 141 1 253 290 50 20 chr6 82840227 82840327 -106439227 + L2 LINE L2 3211 3313 0 28 29 0 0 chr6 82841544 82841579 -106437975 + AT_rich Low_complexity Low_complexity 1 35 0 427 188 47 0 chr6 82841914 82841999 -106437555 - LTR16C LTR ERVL -23 468 380 1481 195 85 56 chr6 82842014 82842460 -106437094 - MLT1C LTR MaLR -8 459 1 779 251 97 40 chr6 82842487 82842786 -106436768 - LTR16C LTR ERVL -175 316 1 916 169 174 27 chr6 82843188 82843407 -106436147 - MLT1B LTR MaLR -3 387 137 2222 111 10 0 chr6 82843423 82843720 -106435834 + AluSq SINE Alu 1 300 -13 369 75 0 0 chr6 82843736 82843789 -106435765 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 427 187 0 13 chr6 82843789 82843864 -106435690 - MLT1B LTR MaLR -316 74 1 219 245 0 0 chr6 82843876 82843925 -106435629 + GA-rich Low_complexity Low_complexity 1 49 0 191 341 122 0 chr6 82843973 82844055 -106435499 + MIR3 SINE MIR 65 156 -52 26 64 0 0 chr6 82844828 82844875 -106434679 + AT_rich Low_complexity Low_complexity 1 47 0 591 256 50 43 chr6 82844975 82845233 -106434321 - MIR SINE MIR 0 262 3 297 295 48 9 chr6 82845961 82846066 -106433488 + MIR SINE MIR 95 203 -59 * 1385 278 62 63 chr6 82846057 82847139 -106432415 + L2 LINE L2 2233 3313 0 294 273 121 10 chr6 82847263 82847362 -106432192 - MIR3 SINE MIR -37 171 84 2319 50 43 0 chr6 82848029 82848311 -106431243 + AluY SINE Alu 1 294 -17 194 320 0 0 chr6 82849507 82849557 -106429997 - L2 LINE L2 -35 3237 3188 276 359 34 8 chr6 82850014 82850131 -106429423 + MER5A DNA MER1_type 47 166 -23 866 197 42 26 chr6 82850226 82850419 -106429135 + MER58 DNA MER1_type 2 197 -2223 1262 316 119 36 chr6 82850448 82850507 -106429047 + L3 LINE CR1 663 716 -861 1699 160 7 29 chr6 82850507 82850814 -106428740 + AluJb SINE Alu 7 306 -6 1262 316 119 36 chr6 82850814 82851579 -106427975 + L3 LINE CR1 716 1555 -22 198 372 51 0 chr6 82851802 82851939 -106427615 - L2 LINE L2 -212 3060 2917 239 256 103 60 chr6 82851990 82852107 -106427447 - L2 LINE L2 -2 3270 3149 323 202 202 11 chr6 82852232 82852321 -106427233 - L2 LINE L2 -5 3308 3203 640 183 92 7 chr6 82853347 82853489 -106426065 + Charlie4 DNA MER1_type 1804 1957 -4 1861 168 0 3 chr6 82853768 82854065 -106425489 + AluJb SINE Alu 1 296 -16 24 32 0 0 chr6 82854326 82854357 -106425197 + AT_rich Low_complexity Low_complexity 1 31 0 359 308 19 0 chr6 82854366 82854470 -106425084 - FLAM_A SINE Alu -27 106 1 1536 196 39 18 chr6 82854477 82854640 -106424914 - AluJo SINE Alu -21 291 118 184 30 61 0 chr6 82854640 82854673 -106424881 + A-rich Low_complexity Low_complexity 102 136 0 1536 196 39 18 chr6 82854673 82854794 -106424760 - AluJo SINE Alu -194 118 1 259 114 0 0 chr6 82855125 82855160 -106424394 - MLT1A2 LTR MaLR -339 35 1 510 254 14 7 chr6 82855504 82855642 -106423912 - MIR SINE MIR -5 257 119 856 221 24 65 chr6 82855642 82855957 -106423597 - MLT1A2 LTR MaLR 0 390 27 207 299 0 15 chr6 82855979 82856046 -106423508 - MIR SINE MIR -127 135 70 595 298 168 20 chr6 82856141 82856836 -106422718 + L2 LINE L2 2526 3313 0 410 304 0 0 chr6 82857110 82857225 -106422329 - MIR SINE MIR -102 160 46 210 143 48 0 chr6 82858046 82858088 -106421466 + A-rich Low_complexity Low_complexity 2 45 0 236 269 0 15 chr6 82858244 82858311 -106421243 + (CATATA)n Simple_repeat Simple_repeat 5 70 0 1867 150 3 3 chr6 82858988 82859274 -106420280 + AluJo SINE Alu 1 286 -26 2038 108 0 81 chr6 82859341 82859676 -106419878 + AluSx SINE Alu 1 308 -4 1036 296 92 1 chr6 82859757 82860232 -106419322 + L2 LINE L2 2546 3066 -247 787 233 33 57 chr6 82861704 82861949 -106417605 - MIR SINE MIR -3 259 21 857 287 45 0 chr6 82863061 82863305 -106416249 - MIR SINE MIR 0 262 8 21 0 0 0 chr6 82864301 82864322 -106415232 + AT_rich Low_complexity Low_complexity 1 21 0 553 301 92 0 chr6 82865024 82865177 -106414377 + MER5A DNA MER1_type 17 183 -6 208 378 14 0 chr6 82865339 82865413 -106414141 + MIR3 SINE MIR 119 193 -15 205 324 15 0 chr6 82865974 82866042 -106413512 + L2 LINE L2 3201 3269 -3 298 343 151 24 chr6 82866053 82866345 -106413209 - L2 LINE L2 -399 2915 2587 7286 135 10 20 chr6 82866521 82867591 -106411963 - HSMAR2 DNA Mariner -11 1291 232 2092 100 0 31 chr6 82867591 82867942 -106411612 - AluSq SINE Alu 0 344 3 7286 135 10 20 chr6 82867942 82868044 -106411510 - HSMAR2 DNA Mariner -1070 232 130 755 106 28 35 chr6 82868144 82868285 -106411269 - HSMAR2 DNA Mariner -1161 141 2 288 145 26 26 chr6 82868397 82868473 -106411081 + GA-rich Low_complexity Low_complexity 1 76 0 312 300 36 18 chr6 82868650 82868760 -106410794 + LTR67 LTR ERVL 92 203 -354 1042 188 0 0 chr6 82868937 82869113 -106410441 - AluJ SINE Alu -4 308 133 4911 9 0 2 chr6 82869121 82869677 -106409877 + L1PA2 LINE L1 5597 6151 -4 742 189 0 0 chr6 82869677 82869804 -106409750 - AluJ SINE Alu -175 127 1 416 133 0 13 chr6 82871744 82871819 -106407735 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 297 197 0 0 chr6 82872708 82872774 -106406780 + (TA)n Simple_repeat Simple_repeat 1 66 0 290 246 44 0 chr6 82872999 82873113 -106406441 - L1MEd LINE L1 -3855 3102 2984 242 286 88 31 chr6 82873368 82873595 -106405959 - L1MEd LINE L1 -5860 1087 848 988 241 33 5 chr6 82874028 82874240 -106405314 + MER58A DNA MER1_type 2 219 -5 33 25 0 0 chr6 82874429 82874469 -106405085 + AT_rich Low_complexity Low_complexity 1 40 0 2108 72 3 45 chr6 82874469 82874760 -106404794 - AluY SINE Alu -32 279 1 186 262 115 16 chr6 82875398 82875459 -106404095 + L2 LINE L2 1882 1948 -1366 447 226 61 66 chr6 82875911 82876092 -106403462 - MER112 DNA MER1_type 0 260 81 2145 121 13 0 chr6 82877787 82878092 -106401462 - AluSx SINE Alu -3 309 1 345 252 103 0 chr6 82878125 82878232 -106401322 + MIR SINE MIR 74 191 -71 21 0 0 0 chr6 82879706 82879727 -106399827 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 82881940 82881962 -106397592 + AT_rich Low_complexity Low_complexity 1 22 0 1020 188 98 21 chr6 82883131 82883365 -106396189 - L1M4 LINE L1 -503 5681 5430 1697 267 31 17 chr6 82883958 82884374 -106395180 - L1MEd LINE L1 -6424 435 14 1279 196 53 46 chr6 82884441 82884722 -106394832 - AluJo SINE Alu -21 291 9 209 108 27 0 chr6 82884731 82884768 -106394786 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 21 36 0 0 chr6 82884791 82884819 -106394735 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 82884970 82884992 -106394562 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 82885049 82885071 -106394483 + AT_rich Low_complexity Low_complexity 1 22 0 188 111 28 0 chr6 82885158 82885194 -106394360 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 187 26 0 79 chr6 82886124 82886162 -106393392 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1988 139 0 0 chr6 82886776 82887083 -106392471 + AluSx SINE Alu 3 309 0 662 157 16 8 chr6 82887484 82887652 -106391902 - AluJb SINE Alu 0 330 162 948 153 51 25 chr6 82887684 82887880 -106391674 - AluJb SINE Alu -106 206 6 257 50 0 25 chr6 82888179 82888219 -106391335 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 12018 30 3 0 chr6 82888219 82890406 -106389148 - L1PA3 LINE L1 -24 6131 3939 1521 306 82 15 chr6 82891497 82892418 -106387136 + L2 LINE L2 2315 3305 -8 21 82 0 0 chr6 82893696 82893745 -106385809 + AT_rich Low_complexity Low_complexity 1 49 0 202 308 8 94 chr6 82893828 82893945 -106385609 - MIR SINE MIR -68 140 34 213 39 0 0 chr6 82894157 82894183 -106385371 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr6 82895025 82895054 -106384500 + AT_rich Low_complexity Low_complexity 1 29 0 770 233 85 0 chr6 82896071 82896307 -106383247 - MER58B DNA MER1_type -1 340 74 309 208 104 118 chr6 82896364 82896508 -106383046 - MIR SINE MIR -7 255 114 493 268 0 24 chr6 82896583 82896706 -106382848 - MER5A DNA MER1_type -9 180 61 325 278 14 0 chr6 82896709 82896781 -106382773 - MER58B DNA MER1_type -267 74 2 619 231 0 0 chr6 82896853 82896987 -106382567 - L1 LINE L1 -3486 2660 2527 * 8707 207 29 30 chr6 82896986 82899159 -106380395 + L1 LINE L1 2689 4859 -1287 * 38708 78 7 9 chr6 82899155 82901690 -106377864 - L1PA5 LINE L1 -4 6150 3612 2265 106 0 6 chr6 82901690 82902002 -106377552 - AluY SINE Alu -1 310 1 38708 78 7 9 chr6 82902002 82905624 -106373930 - L1PA5 LINE L1 -2542 3612 5 2511 164 17 25 chr6 82905623 82906478 -106373076 + L1P5 LINE L1 4845 5696 -455 * 2310 92 3 0 chr6 83007445 83007740 -106271814 + AluSp SINE Alu 3 298 -15 1930 109 50 0 chr6 83009124 83009407 -106270147 - AluSg SINE Alu -13 297 1 213 306 82 10 chr6 83009649 83009747 -106269807 + MIR SINE MIR 20 124 -138 269 26 26 0 chr6 83009750 83009788 -106269766 + (TAAAA)n Simple_repeat Simple_repeat 4 42 0 252 300 0 0 chr6 83009828 83009898 -106269656 + (CATA)n Simple_repeat Simple_repeat 3 72 0 287 263 61 35 chr6 83011828 83011907 -106267647 - L2 LINE L2 0 3272 3188 252 0 0 0 chr6 83011907 83011935 -106267619 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 287 263 61 35 chr6 83011935 83011969 -106267585 - L2 LINE L2 -84 3188 3156 22 70 0 0 chr6 83012656 83012699 -106266855 + AT_rich Low_complexity Low_complexity 1 43 0 215 282 103 13 chr6 83013693 83013771 -106265783 + L2 LINE L2 3184 3268 -4 21 0 0 0 chr6 83013853 83013874 -106265680 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr6 83013907 83013944 -106265610 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 83014953 83014974 -106264580 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 83016074 83016098 -106263456 + AT_rich Low_complexity Low_complexity 1 24 0 49 32 0 0 chr6 83017687 83017750 -106261804 + AT_rich Low_complexity Low_complexity 1 63 0 31 44 0 0 chr6 83018200 83018245 -106261309 + AT_rich Low_complexity Low_complexity 1 45 0 254 299 155 10 chr6 83018344 83018441 -106261113 - MIR SINE MIR -63 145 35 27 0 0 0 chr6 83018675 83018702 -106260852 + AT_rich Low_complexity Low_complexity 1 27 0 579 230 9 0 chr6 83019568 83019681 -106259873 + MER81 DNA DNA 1 114 0 470 282 68 47 chr6 83019777 83020011 -106259543 - MIR SINE MIR -16 246 8 279 290 118 43 chr6 83020048 83020234 -106259320 - MIR SINE MIR -49 213 14 25 51 0 0 chr6 83022824 83022863 -106256691 + AT_rich Low_complexity Low_complexity 1 39 0 868 176 7 7 chr6 83022962 83023115 -106256439 - MER2 DNA MER2_type 0 345 193 980 170 26 26 chr6 83023174 83023368 -106256186 - MER2 DNA MER2_type -136 209 16 277 372 61 46 chr6 83023569 83023765 -106255789 - MIR3 SINE MIR -5 203 5 35 24 0 0 chr6 83024328 83024370 -106255184 + AT_rich Low_complexity Low_complexity 1 42 0 41 21 0 0 chr6 83024559 83024607 -106254947 + AT_rich Low_complexity Low_complexity 1 48 0 28 29 0 0 chr6 83025821 83025856 -106253698 + AT_rich Low_complexity Low_complexity 1 35 0 243 125 0 0 chr6 83027759 83027799 -106251755 + (CA)n Simple_repeat Simple_repeat 1 40 0 2042 93 45 3 chr6 83029004 83029293 -106250261 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr6 83030099 83030121 -106249433 + AT_rich Low_complexity Low_complexity 1 22 0 1664 142 4 4 chr6 83033250 83033510 -106246044 + AluSx SINE Alu 35 294 -18 26 64 0 0 chr6 83033929 83033976 -106245578 + AT_rich Low_complexity Low_complexity 1 47 0 1258 147 34 46 chr6 83034408 83034646 -106244908 - MER46A DNA MER2_type 0 236 2 530 198 138 0 chr6 83035481 83035597 -106243957 - MER58B DNA MER1_type -18 323 192 216 86 0 0 chr6 83037218 83037253 -106242301 + (CA)n Simple_repeat Simple_repeat 2 36 0 25 51 0 0 chr6 83039021 83039060 -106240494 + AT_rich Low_complexity Low_complexity 1 39 0 539 275 98 21 chr6 83039299 83039736 -106239818 - L1MEd LINE L1 -3529 2600 2130 495 251 35 59 chr6 83040320 83040523 -106239031 - L1MEd LINE L1 -5914 205 8 26 0 0 0 chr6 83040543 83040569 -106238985 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr6 83040584 83040612 -106238942 + AT_rich Low_complexity Low_complexity 1 28 0 205 297 11 44 chr6 83041363 83041454 -106238100 + MIR SINE MIR 129 216 -46 921 201 56 47 chr6 83043150 83043384 -106236170 - MER106A DNA MER1_type 0 236 1 256 298 38 0 chr6 83044114 83044234 -106235320 + L1ME LINE L1 196 319 -5886 411 291 156 46 chr6 83044962 83045555 -106233999 + L1ME LINE L1 1042 1569 -4827 477 0 0 0 chr6 83045555 83045608 -106233946 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 411 291 156 46 chr6 83045608 83046119 -106233435 + L1ME LINE L1 1569 2267 -4129 1017 210 27 27 chr6 83046234 83046453 -106233101 + MER58A DNA MER1_type 6 224 0 546 288 114 23 chr6 83046453 83046804 -106232750 + L1ME LINE L1 3452 3834 -2381 22 0 0 0 chr6 83046973 83046995 -106232559 + AT_rich Low_complexity Low_complexity 1 22 0 508 226 48 30 chr6 83046995 83047163 -106232391 + L1ME LINE L1 4328 4498 -1717 23 0 0 0 chr6 83048007 83048030 -106231524 + AT_rich Low_complexity Low_complexity 1 23 0 395 198 63 27 chr6 83048067 83048178 -106231376 + MER104 DNA Tc2 5 119 -61 1499 193 94 81 chr6 83048217 83048672 -106230882 + MLT1D LTR MaLR 3 463 -42 274 228 0 0 chr6 83048679 83048736 -106230818 + HsTC2 DNA Tc2 1843 1899 0 1870 174 30 18 chr6 83048873 83049270 -106230284 - L1MB7 LINE L1 -358 5826 5425 3673 59 21 2 chr6 83049507 83049984 -106229570 + L1PA7 LINE L1 5666 6151 -3 343 61 0 91 chr6 83049991 83050057 -106229497 + L1MA2 LINE L1 6245 6304 0 21 0 0 0 chr6 83050164 83050185 -106229369 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr6 83050549 83050577 -106228977 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 348 282 8 23 chr6 83050916 83051047 -106228507 - LTR37B LTR ERV1 -143 325 197 1157 265 184 29 chr6 83051295 83051979 -106227575 - L2 LINE L2 -864 2450 1661 22 0 0 0 chr6 83052663 83052685 -106226869 + AT_rich Low_complexity Low_complexity 1 22 0 182 189 0 94 chr6 83053270 83053323 -106226231 + L3 LINE CR1 670 717 -860 2386 41 0 0 chr6 83053935 83054225 -106225329 + L1PA3 LINE L1 5865 6154 -1 22 0 0 0 chr6 83055581 83055603 -106223951 + AT_rich Low_complexity Low_complexity 1 22 0 6535 64 24 12 chr6 83056590 83057521 -106222033 - L1PA7 LINE L1 0 6154 5232 184 333 58 0 chr6 83058115 83058202 -106221352 + MIR3 SINE MIR 110 201 -7 6594 31 1 0 chr6 83059118 83059897 -106219657 - L1PA4 LINE L1 0 6155 5376 2664 35 12 0 chr6 83059897 83060238 -106219316 + L1PA4 LINE L1 5042 5386 -760 562 248 62 0 chr6 83060240 83060369 -106219185 - MIR SINE MIR -111 151 15 360 43 0 0 chr6 83060377 83060423 -106219131 + (GA)n Simple_repeat Simple_repeat 2 47 0 310 309 96 86 chr6 83060458 83060782 -106218772 - L2 LINE L2 -3 3269 2943 10457 27 3 0 chr6 83060813 83062830 -106216724 - L1PA4 LINE L1 -3 6152 4133 279 0 0 0 chr6 83064154 83064185 -106215369 + (TG)n Simple_repeat Simple_repeat 1 31 0 294 143 0 0 chr6 83064995 83065044 -106214510 + (T)n Simple_repeat Simple_repeat 1 49 0 559 149 0 0 chr6 83065051 83065138 -106214416 - AluJ/FLAM SINE Alu -225 87 1 22 0 0 0 chr6 83066445 83066467 -106213087 + AT_rich Low_complexity Low_complexity 1 22 0 406 260 55 16 chr6 83066890 83067017 -106212537 - MIR SINE MIR 0 262 131 22 35 0 0 chr6 83067158 83067187 -106212367 + AT_rich Low_complexity Low_complexity 1 29 0 364 276 60 17 chr6 83067588 83067704 -106211850 + MIR SINE MIR 108 228 -34 1023 228 83 7 chr6 83068167 83068443 -106211111 + MER58B DNA MER1_type 29 325 -16 192 235 112 51 chr6 83068786 83068884 -106210670 + L2 LINE L2 3168 3271 -1 594 203 5 76 chr6 83069725 83069925 -106209629 - MER8 DNA MER2_type 0 239 1 838 187 0 33 chr6 83070105 83070287 -106209267 - L1PB4 LINE L1 -2 6154 5979 29 28 0 0 chr6 83071036 83071072 -106208482 + AT_rich Low_complexity Low_complexity 1 36 0 196 189 0 0 chr6 83072893 83072930 -106206624 - L2 LINE L2 -1 3312 3276 491 273 18 90 chr6 83072939 83073217 -106206337 - MIR SINE MIR 0 262 5 616 165 63 0 chr6 83073455 83073582 -106205972 - MIR SINE MIR -110 152 18 490 270 126 31 chr6 83073839 83073998 -106205556 - MIR SINE MIR -83 179 6 263 333 14 49 chr6 83074232 83074376 -106205178 - MLT1I LTR MaLR -207 202 64 2367 85 19 0 chr6 83074504 83074811 -106204743 - AluSq SINE Alu 0 313 1 429 297 77 24 chr6 83075298 83075464 -106204090 - MIR SINE MIR -30 232 50 2098 103 0 0 chr6 83075464 83075780 -106203774 + AluSx SINE Alu 1 316 0 429 297 77 24 chr6 83075780 83075821 -106203733 - MIR SINE MIR -212 50 13 301 125 0 0 chr6 83075912 83075968 -106203586 - L1MA3 LINE L1 0 6305 6250 23 0 0 0 chr6 83076985 83077008 -106202546 + AT_rich Low_complexity Low_complexity 1 23 0 2150 109 0 3 chr6 83078005 83078325 -106201229 + AluSq SINE Alu 3 321 0 403 307 40 23 chr6 83079021 83079197 -106200357 + MIR3 SINE MIR 29 207 -1 337 245 30 78 chr6 83079472 83079750 -106199804 + Tigger8 DNA MER2_type 4 340 -326 888 175 85 0 chr6 83080585 83080762 -106198792 - LTR47A LTR ERVL 0 452 261 199 157 24 36 chr6 83082153 83082236 -106197318 + (TA)n Simple_repeat Simple_repeat 2 83 0 2366 81 13 0 chr6 83082623 83082931 -106196623 - AluSx SINE Alu 0 312 1 339 151 244 0 chr6 83082933 83083019 -106196535 - MLT1D LTR MaLR -2 503 397 265 144 0 189 chr6 83083085 83083175 -106196379 - MADE1 DNA Mariner -2 78 6 1026 198 140 45 chr6 83083179 83083493 -106196061 - MLT1D LTR MaLR -145 360 17 492 18 0 0 chr6 83083493 83083550 -106196004 + (TATTG)n Simple_repeat Simple_repeat 4 60 0 478 237 66 20 chr6 83083934 83084086 -106195468 - MER69 DNA AcHobo 0 2526 2368 184 231 77 31 chr6 83084339 83084404 -106195150 + MIR3 SINE MIR 1 68 -140 564 292 103 5 chr6 83084404 83084589 -106194965 - L2 LINE L2 0 3313 3111 366 359 55 43 chr6 83084701 83085049 -106194505 - L2 LINE L2 -337 2977 2626 25 0 0 0 chr6 83085144 83085169 -106194385 + AT_rich Low_complexity Low_complexity 1 25 0 1082 287 122 9 chr6 83086140 83086568 -106192986 - LTR16C LTR ERVL -12 479 4 532 226 40 8 chr6 83087077 83087201 -106192353 + MER94 DNA DNA 6 133 -1 306 293 140 13 chr6 83087480 83087637 -106191917 + MIR SINE MIR 78 254 -8 236 267 0 0 chr6 83088192 83088252 -106191302 + GA-rich Low_complexity Low_complexity 1 60 0 25 0 0 0 chr6 83089412 83089437 -106190117 + AT_rich Low_complexity Low_complexity 1 25 0 2004 50 50 23 chr6 83089819 83090079 -106189475 - AluY SINE Alu -3 308 42 1330 230 13 58 chr6 83090902 83091297 -106188257 - MLT2C1 LTR ERVL -4 393 17 254 320 131 29 chr6 83091897 83092072 -106187482 + L2 LINE L2 2927 3119 -153 266 164 0 16 chr6 83092651 83092712 -106186842 + (TG)n Simple_repeat Simple_repeat 1 60 0 384 316 18 9 chr6 83093328 83093442 -106186112 + MIR SINE MIR 34 148 -114 2327 96 0 0 chr6 83095436 83095739 -106183815 - AluSc SINE Alu -6 303 1 3522 116 21 23 chr6 83096160 83096688 -106182866 - MER1A DNA MER1_type 0 527 1 1746 163 24 7 chr6 83097998 83098293 -106181261 + AluSg SINE Alu 1 300 -10 1421 274 146 43 chr6 83098498 83099027 -106180527 - MER115 DNA AcHobo -22 671 89 2073 128 0 29 chr6 83100077 83100390 -106179164 + AluSx SINE Alu 4 307 -5 945 212 47 9 chr6 83101178 83101390 -106178164 - MIR SINE MIR -30 232 13 3505 53 2 0 chr6 83101493 83101924 -106177630 + L1PA6 LINE L1 5711 6142 -12 819 138 0 39 chr6 83102228 83102358 -106177196 - FLAM_C SINE Alu -8 125 1 1725 198 10 45 chr6 83102529 83102933 -106176621 - MLT1B LTR MaLR 0 390 1 194 281 211 18 chr6 83104795 83104909 -106174645 + L2 LINE L2 3136 3271 -1 1579 160 0 58 chr6 83105018 83105293 -106174261 + AluJo SINE Alu 1 259 -53 234 81 54 0 chr6 83105328 83105365 -106174189 + Alu SINE Alu 272 310 -10 24 0 0 0 chr6 83105399 83105423 -106174131 + AT_rich Low_complexity Low_complexity 1 24 0 741 355 78 22 chr6 83105689 83106320 -106173234 + L2 LINE L2 1634 2299 -1015 318 250 11 43 chr6 83106331 83106423 -106173131 + L2 LINE L2 3225 3313 0 234 306 56 14 chr6 83107075 83107147 -106172407 + MIR SINE MIR 31 105 -103 554 225 25 0 chr6 83107150 83107270 -106172284 + L2 LINE L2 3187 3309 -4 408 296 145 60 chr6 83108086 83108254 -106171300 + L2 LINE L2 2969 3121 -192 2426 75 0 3 chr6 83108254 83108560 -106170994 - AluY SINE Alu -6 305 1 408 296 145 60 chr6 83108560 83108709 -106170845 + L2 LINE L2 3121 3313 0 401 294 28 7 chr6 83109218 83109361 -106170193 + L1ME LINE L1 5507 5652 -469 2364 296 97 16 chr6 83109569 83110738 -106168816 - L2 LINE L2 -49 3264 2006 183 80 0 0 chr6 83112870 83112895 -106166659 + (T)n Simple_repeat Simple_repeat 1 25 0 323 295 8 49 chr6 83113557 83113679 -106165875 - L2 LINE L2 -6 3307 3191 1364 248 112 80 chr6 83114831 83114970 -106164584 + HAL1 LINE L1 1357 1490 -1017 2417 53 0 10 chr6 83114970 83115270 -106164284 + AluY SINE Alu 2 298 -13 1364 248 112 80 chr6 83115270 83116124 -106163430 + HAL1 LINE L1 1490 2382 -125 472 292 87 80 chr6 83116452 83116944 -106162610 + L1MEd LINE L1 869 1447 -1043 499 264 65 42 chr6 83116949 83117264 -106162290 + L1M3de LINE L1 897 1320 -4730 564 152 6 76 chr6 83117278 83117436 -106162118 + L1MA4 LINE L1 6152 6298 -2 25 31 0 0 chr6 83117467 83117499 -106162055 + AT_rich Low_complexity Low_complexity 1 32 0 427 284 74 18 chr6 83117551 83117780 -106161774 + L1ME3A LINE L1 3750 3991 -2155 504 288 165 13 chr6 83117873 83118251 -106161303 + L1ME3A LINE L1 5492 5929 -241 2019 135 0 0 chr6 83118257 83118562 -106160992 + AluSx SINE Alu 1 305 0 316 320 74 66 chr6 83118567 83118811 -106160743 + L1ME LINE L1 3373 3618 -2528 446 293 58 71 chr6 83118866 83119300 -106160254 + L1ME LINE L1 5397 5824 -297 279 140 0 0 chr6 83119319 83119369 -106160185 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 30 27 0 0 chr6 83120765 83120802 -106158752 + AT_rich Low_complexity Low_complexity 1 37 0 234 87 29 72 chr6 83120912 83120981 -106158573 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 399 317 93 0 chr6 83121088 83121271 -106158283 - MIR SINE MIR -7 255 56 243 146 0 0 chr6 83122510 83122551 -106157003 + (CA)n Simple_repeat Simple_repeat 1 41 0 223 192 41 14 chr6 83122651 83122724 -106156830 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 22 0 0 0 chr6 83123681 83123703 -106155851 + AT_rich Low_complexity Low_complexity 1 22 0 564 174 214 34 chr6 83125787 83125965 -106153589 - MER6B DNA MER2_type 0 210 1 319 288 85 23 chr6 83125998 83126175 -106153379 - MIR SINE MIR -73 189 2 425 88 0 15 chr6 83126376 83126444 -106153110 + (TC)n Simple_repeat Simple_repeat 1 67 0 2643 115 32 2 chr6 83126649 83127115 -106152439 + MER1A DNA MER1_type 1 529 0 495 272 107 22 chr6 83127232 83127456 -106152098 - MLT1K LTR MaLR -311 277 35 441 256 8 16 chr6 83127747 83127872 -106151682 + MIR SINE MIR 131 254 -8 3199 148 13 9 chr6 83129119 83129658 -106149896 - L1PA16 LINE L1 -1 6165 5625 1453 209 88 20 chr6 83129667 83129828 -106149726 - Charlie4a DNA MER1_type -1456 505 356 1641 153 9 59 chr6 83129828 83130148 -106149406 + AluJb SINE Alu 1 304 -8 1453 209 88 20 chr6 83130148 83130431 -106149123 - Charlie4a DNA MER1_type -1605 356 31 2075 171 70 0 chr6 83131007 83131404 -106148150 + MSTB LTR MaLR 1 425 -1 216 302 241 9 chr6 83132280 83132396 -106147158 - MER5A DNA MER1_type 0 189 47 783 241 11 0 chr6 83132396 83132570 -106146984 - MER45A DNA AcHobo 0 178 3 1588 196 40 3 chr6 83133069 83133365 -106146189 - AluJo SINE Alu -5 307 1 845 231 92 83 chr6 83134489 83134944 -106144610 - MLT1C LTR MaLR -8 459 1 606 241 146 0 chr6 83135571 83135729 -106143825 + MER5A DNA MER1_type 9 189 0 200 216 0 20 chr6 83136106 83136157 -106143397 + A-rich Low_complexity Low_complexity 3 52 0 316 237 66 0 chr6 83137068 83137144 -106142410 + L2 LINE L2 3229 3309 -4 424 284 31 43 chr6 83137312 83137474 -106142080 - MIR SINE MIR -102 160 1 399 345 38 25 chr6 83137629 83137867 -106141687 + MIR SINE MIR 9 249 -13 885 124 30 24 chr6 83138022 83138191 -106141363 - HSMAR2 DNA Mariner -1119 183 14 437 83 0 14 chr6 83139665 83139737 -106139817 + (TG)n Simple_repeat Simple_repeat 2 72 0 1954 148 3 0 chr6 83139765 83140049 -106139505 - AluSq SINE Alu -22 291 7 219 248 38 19 chr6 83140350 83140455 -106139099 + CT-rich Low_complexity Low_complexity 2 108 0 25 31 0 0 chr6 83140656 83140688 -106138866 + AT_rich Low_complexity Low_complexity 1 32 0 198 306 75 60 chr6 83142037 83142171 -106137383 + L2 LINE L2 1773 1908 -1406 240 304 144 47 chr6 83142193 83142450 -106137104 + L2 LINE L2 2066 2347 -967 301 175 0 125 chr6 83142551 83142631 -106136923 - MER20 DNA MER1_type -140 79 10 187 253 11 77 chr6 83143154 83143245 -106136309 + L3b LINE CR1 1130 1214 -369 421 282 9 13 chr6 83143340 83143481 -106136073 - MER5A DNA MER1_type -34 146 6 214 336 64 46 chr6 83144148 83144431 -106135123 - L2 LINE L2 -340 2974 2687 1914 93 31 7 chr6 83144884 83145175 -106134379 + L1MA1 LINE L1 6004 6301 -1 29 0 0 0 chr6 83145175 83145204 -106134350 + AT_rich Low_complexity Low_complexity 1 29 0 288 53 0 0 chr6 83145524 83145562 -106133992 + (GA)n Simple_repeat Simple_repeat 2 39 0 731 296 59 35 chr6 83145809 83146214 -106133340 + L1MC4a LINE L1 5511 5925 -1883 3867 127 27 6 chr6 83146347 83146979 -106132575 - L1PA16 LINE L1 0 6166 5522 232 259 0 0 chr6 83147497 83147555 -106131999 - MLT1J1 LTR MaLR -127 319 262 291 54 0 0 chr6 83147664 83147701 -106131853 + (CA)n Simple_repeat Simple_repeat 1 37 0 1686 164 59 73 chr6 83149479 83149917 -106129637 - MSTB1 LTR MaLR 0 432 1 312 154 51 39 chr6 83149931 83150009 -106129545 - L1MC5 LINE L1 -36 7925 7847 392 212 53 26 chr6 83150083 83150196 -106129358 + LTR52 LTR ERVL 15 130 -291 519 269 87 14 chr6 83150261 83150480 -106129074 - LTR52 LTR ERVL -6 415 181 1265 271 30 14 chr6 83151312 83151943 -106127611 - L1M1 LINE L1 -4291 2091 1373 540 200 50 0 chr6 83152001 83152121 -106127433 - MER63 DNA MER1_type -307 755 4 525 289 184 5 chr6 83152344 83152562 -106126992 + MIR SINE MIR 2 258 -4 226 265 15 15 chr6 83152563 83152631 -106126923 + MIR SINE MIR 185 252 -10 25 0 0 0 chr6 83153095 83153120 -106126434 + AT_rich Low_complexity Low_complexity 1 25 0 5569 50 0 0 chr6 83154359 83155036 -106124518 - L1PA5 LINE L1 -2 6152 5476 1649 52 22 9 chr6 83155044 83155274 -106124280 - L1PA4 LINE L1 -3 6152 5920 2620 106 17 6 chr6 83156844 83157204 -106122350 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr6 83158308 83158336 -106121218 + AT_rich Low_complexity Low_complexity 1 28 0 840 217 0 6 chr6 83158346 83158503 -106121051 - FRAM SINE Alu -23 153 1 808 156 0 0 chr6 83158603 83158725 -106120829 - FLAM_C SINE Alu -20 123 2 221 331 74 25 chr6 83158850 83158971 -106120583 + MIR3 SINE MIR 60 186 -22 2080 93 36 10 chr6 83159292 83159593 -106119961 + AluSc SINE Alu 1 309 0 205 184 0 0 chr6 83160197 83160235 -106119319 + CT-rich Low_complexity Low_complexity 3 40 0 380 314 20 0 chr6 83161134 83161287 -106118267 + L1M2 LINE L1 11 166 -6683 3793 197 8 16 chr6 83162246 83163099 -106116455 + L1 LINE L1 3631 4476 -1670 2682 174 19 74 chr6 83163075 83163338 -106116216 + L1PA16 LINE L1 5517 5793 -373 * 432 0 0 0 chr6 83163338 83163386 -106116168 + (CA)n Simple_repeat Simple_repeat 2 49 0 2682 174 19 74 chr6 83163386 83163808 -106115746 + L1PA16 LINE L1 5793 6164 -2 655 284 78 12 chr6 83164309 83164552 -106115002 + L2 LINE L2 3055 3313 0 2168 93 3 17 chr6 83164658 83164958 -106114596 + AluSg1 SINE Alu 7 302 -7 2155 116 0 0 chr6 83165283 83165575 -106113979 + AluSg SINE Alu 1 292 -18 4632 151 111 1 chr6 83165619 83166666 -106112888 - L1MA6 LINE L1 -1 6299 5151 314 280 98 8 chr6 83166861 83166993 -106112561 - L1ME3 LINE L1 -88 6074 5931 918 269 118 15 chr6 83167035 83167603 -106111951 - L1ME3A LINE L1 -219 5945 5313 465 283 65 7 chr6 83167615 83167891 -106111663 - L1ME3A LINE L1 -875 5271 4980 607 177 8 0 chr6 83167916 83168040 -106111514 + L1MA8 LINE L1 6141 6265 -26 704 256 47 3 chr6 83168058 83168375 -106111179 - L1ME3A LINE L1 -3146 3000 2670 394 299 49 27 chr6 83169166 83169350 -106110204 + MIR SINE MIR 58 245 -17 886 252 48 9 chr6 83170036 83170266 -106109288 - MIR SINE MIR 0 262 24 222 200 0 0 chr6 83171009 83171049 -106108505 - L2 LINE L2 -9 3304 3265 766 231 150 90 chr6 83172393 83172947 -106106607 - MLT1G1 LTR MaLR -8 587 1 225 310 241 0 chr6 83173215 83173331 -106106223 + MIR3 SINE MIR 58 201 -7 317 154 0 46 chr6 83175213 83175278 -106104276 + AluJ/FRAM SINE Alu 232 293 -9 21 0 0 0 chr6 83175656 83175677 -106103877 + AT_rich Low_complexity Low_complexity 1 21 0 207 186 0 0 chr6 83175911 83175954 -106103600 + (CTCA)n Simple_repeat Simple_repeat 4 46 0 197 225 0 0 chr6 83177661 83177701 -106101853 - L2 LINE L2 -575 2739 2700 21834 48 2 1 chr6 83178747 83182642 -106096912 + L1PA3 LINE L1 3 3894 -2252 20875 43 1 0 chr6 83182744 83185349 -106094205 + L1P LINE L1 2652 5259 -887 12248 37 3 1 chr6 83185449 83187658 -106091896 + L1PA3 LINE L1 3922 6155 0 1613 204 36 0 chr6 83187673 83188002 -106091552 + MER58B DNA MER1_type 1 341 0 286 280 102 42 chr6 83190286 83190404 -106089150 + MIR SINE MIR 81 205 -57 322 259 35 26 chr6 83190539 83190655 -106088899 - MIR SINE MIR -14 248 132 420 209 108 23 chr6 83191671 83191800 -106087754 + ORSL DNA AcHobo 1 140 -135 527 179 0 0 chr6 83191802 83191886 -106087668 + FRAM SINE Alu 63 146 -30 522 152 24 0 chr6 83191891 83192016 -106087538 + (TA)n Simple_repeat Simple_repeat 2 129 0 200 306 0 0 chr6 83192113 83192162 -106087392 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 5588 167 16 14 chr6 83192163 83192413 -106087141 + L1MA4 LINE L1 4738 4986 -1314 1740 160 44 3 chr6 83192413 83192707 -106086847 + AluSx SINE Alu 1 306 -6 5588 167 16 14 chr6 83192707 83194013 -106085541 + L1MA4 LINE L1 4986 6300 0 690 168 54 30 chr6 83194045 83194212 -106085342 - L1MB7 LINE L1 -76 6108 5938 206 306 42 56 chr6 83195090 83195162 -106084392 + L2 LINE L2 3188 3258 -14 1910 112 14 0 chr6 83195205 83195501 -106084053 + L1MA2 LINE L1 5747 6046 -258 486 313 14 7 chr6 83195953 83196100 -106083454 + MIR3 SINE MIR 57 204 -4 579 270 48 62 chr6 83197025 83197282 -106082272 - MIR SINE MIR 0 262 2 360 296 37 15 chr6 83197304 83197439 -106082115 + MIR3 SINE MIR 42 179 -29 314 250 71 61 chr6 83199530 83199742 -106079812 + MER112 DNA MER1_type 8 221 -39 207 0 0 0 chr6 83201077 83201100 -106078454 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2060 112 0 4 chr6 83201458 83201865 -106077689 + AluSx SINE Alu 5 410 0 4788 41 0 0 chr6 83201965 83202549 -106077005 - L1P LINE L1 -918 5228 4645 10938 29 4 1 chr6 83202549 83203871 -106075683 + L1P LINE L1 3312 4636 -1510 25 0 0 0 chr6 83204114 83204139 -106075415 + AT_rich Low_complexity Low_complexity 1 25 0 392 332 60 41 chr6 83204332 83204648 -106074906 + MLT1K LTR MaLR 81 402 -186 23 33 0 0 chr6 83206142 83206172 -106073382 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr6 83207162 83207182 -106072372 + (TG)n Simple_repeat Simple_repeat 2 21 0 400 111 25 0 chr6 83207194 83207275 -106072279 + (TA)n Simple_repeat Simple_repeat 1 83 0 582 238 62 42 chr6 83208463 83208703 -106070851 + L1ME3A LINE L1 5616 5860 -310 2046 29 4 20 chr6 83208734 83208980 -106070574 + AluY SINE Alu 13 254 -57 826 61 0 35 chr6 83208980 83209128 -106070426 + AluY SINE Alu 170 313 0 249 186 0 51 chr6 83209139 83209198 -106070356 + L1ME3A LINE L1 5891 5946 -224 198 330 133 70 chr6 83209309 83209654 -106069900 + L2 LINE L2 2310 2676 -638 2007 101 18 0 chr6 83209661 83209937 -106069617 - MLT2A2 LTR ERVL 0 453 173 1086 312 51 8 chr6 83210383 83210777 -106068777 - L3 LINE CR1 -532 1045 635 719 225 12 17 chr6 83211006 83211179 -106068375 + MER96 DNA MER1_type 2 173 -2 24 32 0 0 chr6 83212409 83212440 -106067114 + AT_rich Low_complexity Low_complexity 1 31 0 330 303 40 30 chr6 83212572 83212671 -106066883 - L2 LINE L2 -32 3240 3141 2075 130 13 74 chr6 83212763 83212835 -106066719 - THE1C LTR MaLR -2 373 298 1964 125 3 28 chr6 83212835 83213150 -106066404 - AluSx SINE Alu 0 308 1 2075 130 13 74 chr6 83213150 83213466 -106066088 - THE1C LTR MaLR -77 298 7 309 345 63 63 chr6 83213647 83213838 -106065716 + HAL1 LINE L1 480 670 -1837 1946 138 0 32 chr6 83214072 83214384 -106065170 + AluSx SINE Alu 1 302 -10 502 301 116 53 chr6 83214411 83214979 -106064575 + HAL1 LINE L1 994 1597 -910 333 269 11 11 chr6 83215047 83215140 -106064414 + HAL1 LINE L1 1798 1890 -617 260 208 258 0 chr6 83215172 83215292 -106064262 + L1ME LINE L1 5745 5895 -226 230 262 16 0 chr6 83215320 83215381 -106064173 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 624 358 82 12 chr6 83215560 83216144 -106063410 + L2 LINE L2 1787 2411 -903 221 351 14 0 chr6 83216831 83216905 -106062649 + L2 LINE L2 3239 3313 0 413 292 51 11 chr6 83217907 83218085 -106061469 + MIR SINE MIR 75 259 -3 1418 260 51 17 chr6 83218165 83218580 -106060974 - L1MD2 LINE L1 -19 6734 6306 2290 97 0 0 chr6 83218584 83218893 -106060661 + AluSc SINE Alu 1 309 0 1603 206 82 25 chr6 83219124 83219318 -106060236 - L1MD2 LINE L1 -470 6283 6102 2259 68 0 4 chr6 83219318 83219623 -106059931 - AluY SINE Alu 0 304 1 1603 206 82 25 chr6 83219623 83219864 -106059690 - L1MD2 LINE L1 -651 6102 5822 6872 229 97 33 chr6 83219883 83220288 -106059266 - L1MD2 LINE L1 -2826 3714 3337 2173 101 3 0 chr6 83220288 83220576 -106058978 - AluSx SINE Alu -23 289 1 6872 229 97 33 chr6 83220576 83223664 -106055890 - L1MD2 LINE L1 -3203 3337 1 902 173 5 119 chr6 83223647 83223767 -106055787 - L1MC/D LINE L1 -743 5403 5367 * 1821 174 7 0 chr6 83223767 83224065 -106055489 - AluJo SINE Alu 0 312 13 902 173 5 119 chr6 83224065 83224266 -106055288 - L1MC/D LINE L1 -779 5367 5145 480 264 108 6 chr6 83224426 83224593 -106054961 + MIR SINE MIR 21 204 -58 336 317 45 22 chr6 83224646 83224870 -106054684 - L1MC/D LINE L1 -1536 4610 4382 297 167 33 22 chr6 83225833 83225923 -106053631 - Charlie5 DNA MER1_type -61 2551 2461 2096 112 7 10 chr6 83226661 83226955 -106052599 - AluSx SINE Alu -18 294 2 25 90 0 0 chr6 83227335 83227402 -106052152 + AT_rich Low_complexity Low_complexity 1 67 0 390 272 11 0 chr6 83227442 83227534 -106052020 + MER2 DNA MER2_type 2 94 -251 236 311 27 54 chr6 83227535 83227683 -106051871 + HAL1 LINE L1 580 723 -1784 273 128 0 0 chr6 83227793 83227840 -106051714 + (CA)n Simple_repeat Simple_repeat 2 48 0 2275 183 36 63 chr6 83229914 83229944 -106049610 - MLT2B3 LTR ERVL -11 543 514 522 0 0 0 chr6 83229944 83230002 -106049552 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 2275 183 36 63 chr6 83230002 83230529 -106049025 - MLT2B3 LTR ERVL -40 514 1 225 0 0 0 chr6 83230794 83230819 -106048735 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 1156 330 144 22 chr6 83232347 83233071 -106046483 - L3 LINE CR1 -202 1375 564 2055 153 0 3 chr6 83234750 83235058 -106044496 + AluSx SINE Alu 1 307 -5 217 341 147 9 chr6 83235606 83235817 -106043737 + MIR SINE MIR 17 256 -6 2091 143 0 0 chr6 83238893 83239374 -106040180 + AluSx SINE Alu 1 481 0 273 267 67 13 chr6 83239838 83239913 -106039641 + L2 LINE L2 3234 3312 -1 21 0 0 0 chr6 83239913 83239934 -106039620 + AT_rich Low_complexity Low_complexity 1 21 0 339 305 109 96 chr6 83240116 83240355 -106039199 + L2 LINE L2 3025 3266 -6 273 272 58 19 chr6 83243074 83243177 -106036377 - MIR SINE MIR 0 262 156 773 256 95 21 chr6 83243535 83243871 -106035683 - L1MC/D LINE L1 -2605 3541 3181 753 220 93 127 chr6 83243878 83244233 -106035321 - MSTD LTR MaLR -53 343 1 1473 210 7 0 chr6 83244233 83244524 -106035030 - L1ME LINE L1 -560 5606 5314 1545 177 37 9 chr6 83244535 83244862 -106034692 - L1MA5 LINE L1 -2 7319 6984 3600 163 24 17 chr6 83245366 83245604 -106033950 - L1MA5 LINE L1 -334 6987 6752 2240 115 7 0 chr6 83245604 83245909 -106033645 - AluSx SINE Alu -5 307 1 3600 163 24 17 chr6 83245909 83246569 -106032985 - L1MA5 LINE L1 -569 6752 6082 9988 203 75 49 chr6 83246593 83247438 -106032116 - L1MA5 LINE L1 -4115 3053 2232 4784 154 8 8 chr6 83247438 83248415 -106031139 - L1PA16 LINE L1 -9 6157 5157 9988 203 75 49 chr6 83248415 83250563 -106028991 - L1MA5 LINE L1 -4936 2232 3 1757 234 52 3 chr6 83250565 83251142 -106028412 - L1M4 LINE L1 -2946 3200 2596 10515 142 14 1 chr6 83251150 83252803 -106026751 + Tigger1 DNA MER2_type 743 2418 0 1953 142 156 11 chr6 83255414 83255780 -106023774 + MSTA LTR MaLR 2 420 -8 326 191 18 47 chr6 83255850 83255971 -106023583 + L1MC4 LINE L1 1995 6983 -1339 621 103 48 0 chr6 83255971 83256097 -106023457 + (TA)n Simple_repeat Simple_repeat 1 132 0 248 231 19 0 chr6 83256097 83256149 -106023405 + (CA)n Simple_repeat Simple_repeat 1 53 0 2019 123 21 0 chr6 83256649 83256933 -106022621 - AluSq SINE Alu -22 291 2 295 319 80 29 chr6 83257537 83257675 -106021879 - MIR3 SINE MIR -5 203 59 1678 92 0 0 chr6 83257724 83257942 -106021612 - AluY SINE Alu 0 311 94 431 51 0 0 chr6 83257942 83258001 -106021553 - AluY SINE Alu -251 59 1 799 181 29 6 chr6 83258666 83258837 -106020717 + MER53 DNA DNA 3 177 -12 194 0 39 0 chr6 83258843 83258869 -106020685 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1909 106 51 18 chr6 83258872 83259022 -106020532 - AluSp SINE Alu -29 284 119 273 29 0 0 chr6 83259022 83259056 -106020498 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1909 106 51 18 chr6 83259056 83259179 -106020375 - AluSp SINE Alu -194 119 2 1803 153 38 3 chr6 83259180 83259468 -106020086 - AluSx SINE Alu -14 298 1 912 255 39 0 chr6 83259676 83259884 -106019670 - MER58A DNA MER1_type -8 216 1 28 61 0 0 chr6 83260180 83260229 -106019325 + AT_rich Low_complexity Low_complexity 1 49 0 714 258 74 4 chr6 83261456 83261700 -106017854 - MIR SINE MIR -1 261 1 284 283 11 22 chr6 83261877 83261969 -106017585 + 7SK RNA RNA 7 97 -96 634 290 6 22 chr6 83262079 83262262 -106017292 + MER5A DNA MER1_type 3 182 -7 21 0 0 0 chr6 83263152 83263173 -106016381 + AT_rich Low_complexity Low_complexity 1 21 0 397 349 11 27 chr6 83264788 83265079 -106014475 + L3 LINE CR1 483 822 -755 358 301 139 60 chr6 83265113 83265429 -106014125 + L3 LINE CR1 960 1300 -277 222 37 0 0 chr6 83265598 83265625 -106013929 + (TG)n Simple_repeat Simple_repeat 2 28 0 22 35 0 0 chr6 83265656 83265685 -106013869 + AT_rich Low_complexity Low_complexity 1 29 0 2038 145 33 138 chr6 83265797 83266370 -106013184 + MER67D LTR ERV1 1 513 -1 235 91 55 55 chr6 83266823 83266878 -106012676 + LTR66 LTR ERVL 384 438 -172 450 36 0 0 chr6 83266942 83266998 -106012556 + (CA)n Simple_repeat Simple_repeat 1 56 0 355 354 163 0 chr6 83267085 83267263 -106012291 - MIR SINE MIR -37 225 19 424 244 10 158 chr6 83267274 83267483 -106012071 - MER5B DNA MER1_type 0 178 1 2935 164 16 2 chr6 83267713 83268218 -106011336 + MER41E LTR ERV1 1 512 0 21 36 0 0 chr6 83269289 83269317 -106010237 + AT_rich Low_complexity Low_complexity 1 28 0 396 353 72 34 chr6 83271082 83271317 -106008237 + MIR SINE MIR 1 244 -18 2332 49 39 33 chr6 83272171 83272477 -106007077 - AluY SINE Alu -3 308 1 1965 139 7 0 chr6 83272477 83272779 -106006775 - AluSq SINE Alu -7 306 3 22 35 0 0 chr6 83273778 83273807 -106005747 + AT_rich Low_complexity Low_complexity 1 29 0 4414 244 83 51 chr6 83273986 83274561 -106004993 + L1MC1 LINE L1 2178 2733 -3482 1447 160 0 0 chr6 83274561 83274799 -106004755 + L1PB4 LINE L1 5919 6156 0 4414 244 83 51 chr6 83274799 83276487 -106003067 + L1MC1 LINE L1 2733 4472 -1743 1092 208 90 33 chr6 83276504 83276836 -106002718 + L1MC1 LINE L1 4776 5126 -1089 42930 31 21 1 chr6 83276838 83282868 -105996686 + L1PA2 LINE L1 3 6155 0 5276 167 42 8 chr6 83282868 83283831 -105995723 + L1MC1 LINE L1 5109 6123 -279 2131 179 51 51 chr6 83283831 83284317 -105995237 + MER66B LTR ERV1 1 486 0 5276 167 42 8 chr6 83284317 83284594 -105994960 + L1MC1 LINE L1 6123 6389 -13 2207 133 0 3 chr6 83284717 83285025 -105994529 + AluSx SINE Alu 5 311 -1 720 54 0 0 chr6 83287814 83287907 -105991647 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 11561 84 9 1 chr6 83287921 83290293 -105989261 - L1PA7 LINE L1 0 6154 3769 663 292 42 4 chr6 83291974 83292214 -105987340 - L1ME LINE L1 -617 5549 5301 330 251 53 70 chr6 83292227 83292470 -105987084 - L1ME LINE L1 -672 5561 5323 746 171 24 0 chr6 83292565 83292688 -105986866 - FLAM_C SINE Alu -7 126 1 2323 96 0 3 chr6 83292815 83293116 -105986438 + AluSc SINE Alu 1 300 -9 248 246 86 59 chr6 83293302 83293489 -105986065 - L1ME LINE L1 -4599 1797 1606 1225 201 39 67 chr6 83293671 83293734 -105985820 - L1MD2 LINE L1 -1 6358 6295 2209 106 3 3 chr6 83293734 83294060 -105985494 + AluSc SINE Alu 1 309 0 1330 165 95 42 chr6 83294069 83294354 -105985200 + AluJo SINE Alu 1 300 -2 1225 201 39 67 chr6 83294354 83294639 -105984915 - L1MD2 LINE L1 -72 6287 6010 417 287 32 13 chr6 83294749 83294906 -105984648 - L1ME LINE L1 -5025 1180 1021 1995 147 0 3 chr6 83294982 83295295 -105984259 - AluSx SINE Alu 0 312 1 301 300 62 12 chr6 83295575 83295735 -105983819 - L1ME LINE L1 -5892 313 146 899 249 80 69 chr6 83297348 83298129 -105981425 - L1ME3A LINE L1 -208 6031 5218 1029 269 98 87 chr6 83298388 83299543 -105980011 - L1ME3A LINE L1 -1377 4838 3698 1703 102 27 16 chr6 83299543 83299799 -105979755 - L1PA8A LINE L1 0 6131 5873 1029 269 98 87 chr6 83299799 83301051 -105978503 - L1ME3A LINE L1 -2517 3698 2403 1778 128 56 36 chr6 83301068 83301373 -105978181 - AluSx SINE Alu -1 311 1 2537 147 14 0 chr6 83301373 83301788 -105977766 - L1PA16 LINE L1 -11 6155 5735 1026 180 107 4 chr6 83301797 83302058 -105977496 + L1P LINE L1 5080 5367 -779 466 156 0 0 chr6 83302738 83302815 -105976739 - MADE1 DNA Mariner 0 80 4 323 285 49 89 chr6 83302898 83303144 -105976410 - L1ME3A LINE L1 -4159 2237 2002 466 315 59 0 chr6 83303251 83303537 -105976017 - L1ME3A LINE L1 -4579 1817 1515 2437 163 29 19 chr6 83303585 83304100 -105975454 - L1MA4 LINE L1 -15 6285 5766 1026 251 50 87 chr6 83304120 83304209 -105975345 + LTR9 LTR ERV1 1 92 -520 2331 81 3 7 chr6 83304209 83304504 -105975050 - AluSp SINE Alu -11 302 9 1026 251 50 87 chr6 83304504 83304957 -105974597 + LTR9 LTR ERV1 92 523 -89 338 240 48 19 chr6 83306419 83306523 -105973031 + LTR19C LTR ERV1 673 779 0 786 65 0 0 chr6 83306523 83306631 -105972923 - L1MA4 LINE L1 -30 6270 6163 401 130 0 14 chr6 83306628 83306697 -105972857 - L1MA4 LINE L1 -506 5785 5718 * 6007 114 11 30 chr6 83306700 83307534 -105972020 - L1MA2 LINE L1 0 7723 6911 1460 189 34 57 chr6 83307534 83307831 -105971723 - AluJb SINE Alu -22 290 1 6007 114 11 30 chr6 83307831 83308028 -105971526 - L1MA2 LINE L1 -812 6911 6712 1293 160 0 27 chr6 83308100 83308362 -105971192 - L1MA2 LINE L1 -1761 5804 5550 * 9160 185 25 8 chr6 83308335 83310090 -105969464 - L1MA2 LINE L1 -5765 1800 16 2667 138 45 9 chr6 83310090 83310806 -105968748 - L1MA4 LINE L1 -562 5738 4990 575 266 73 59 chr6 83310926 83311568 -105967986 - L1MEd LINE L1 -4906 1213 563 431 285 67 11 chr6 83312847 83313026 -105966528 + LTR67 LTR ERVL 357 545 -12 652 261 154 3 chr6 83313291 83313590 -105965964 - L1M4 LINE L1 -3569 3279 2936 2494 52 7 3 chr6 83314068 83314376 -105965178 - AluY SINE Alu -2 309 1 516 271 41 46 chr6 83314622 83314840 -105964714 + MIR SINE MIR 5 221 -41 229 216 0 20 chr6 83315340 83315391 -105964163 - MIR SINE MIR -109 153 104 918 157 5 85 chr6 83316794 83317017 -105962537 - MER20 DNA MER1_type 0 219 15 1544 155 53 46 chr6 83317933 83318237 -105961317 + AluJo SINE Alu 2 307 -5 2045 108 35 14 chr6 83318594 83318880 -105960674 + AluSg SINE Alu 1 292 -18 491 289 42 37 chr6 83319586 83319776 -105959778 - MIR SINE MIR 0 262 72 25 51 0 0 chr6 83319801 83319840 -105959714 + AT_rich Low_complexity Low_complexity 1 39 0 2480 77 0 3 chr6 83319905 83320216 -105959338 - AluY SINE Alu -1 310 1 2252 77 40 0 chr6 83320743 83321040 -105958514 - AluY SINE Alu -2 309 1 672 327 132 36 chr6 83321727 83322341 -105957213 + L2 LINE L2 1803 2475 -839 225 364 83 44 chr6 83322441 83322693 -105956861 + L2 LINE L2 2686 2927 -345 1998 129 7 0 chr6 83322693 83322971 -105956583 + AluSx SINE Alu 1 280 -32 225 364 83 44 chr6 83322971 83323209 -105956345 + L2 LINE L2 2927 3201 -71 399 272 57 51 chr6 83323955 83324044 -105955510 + MIR SINE MIR 104 197 -65 2063 123 0 7 chr6 83324044 83324357 -105955197 - AluSq SINE Alu 0 311 1 399 272 57 51 chr6 83324357 83324424 -105955130 + MIR SINE MIR 197 262 0 894 143 0 0 chr6 83325545 83325678 -105953876 + FLAM_C SINE Alu 1 133 0 182 290 148 43 chr6 83326304 83326466 -105953088 + MIR3 SINE MIR 4 182 -26 333 293 128 71 chr6 83328962 83329385 -105950169 - L1M4 LINE L1 -5595 1254 808 324 0 0 0 chr6 83330120 83330156 -105949398 + (TG)n Simple_repeat Simple_repeat 2 37 0 233 269 15 0 chr6 83330363 83330430 -105949124 + CT-rich Low_complexity Low_complexity 2 69 0 23 68 0 0 chr6 83331906 83331950 -105947604 + AT_rich Low_complexity Low_complexity 1 44 0 242 392 85 29 chr6 83332441 83332757 -105946797 + L2 LINE L2 2432 2765 -549 257 356 12 38 chr6 83332961 83333121 -105946433 - L2 LINE L2 -203 3069 2914 184 341 65 32 chr6 83333265 83333388 -105946166 - L2 LINE L2 -563 2751 2625 319 376 121 7 chr6 83333498 83333780 -105945774 - L2 LINE L2 -706 2608 2295 277 206 16 16 chr6 83333830 83333893 -105945661 + L2 LINE L2 3250 3312 -1 523 326 54 64 chr6 83333896 83334414 -105945140 - L2 LINE L2 -1028 2286 1774 462 281 81 101 chr6 83334449 83334883 -105944671 + L2 LINE L2 2848 3272 0 333 305 105 0 chr6 83335011 83335116 -105944438 + MIR SINE MIR 30 145 -63 200 314 17 102 chr6 83335257 83335331 -105944223 + L2 LINE L2 2623 2685 -629 2099 136 0 10 chr6 83335331 83335641 -105943913 - AluSx SINE Alu -5 307 1 200 314 17 102 chr6 83335641 83335684 -105943870 + L2 LINE L2 2685 2730 -584 339 304 89 0 chr6 83335701 83335813 -105943741 + L2 LINE L2 3125 3246 -26 246 291 111 60 chr6 83337169 83337286 -105942268 - L2 LINE L2 -16 3256 3134 738 351 119 44 chr6 83337469 83338523 -105941031 - L2 LINE L2 -473 2841 1709 754 281 25 38 chr6 83338584 83338819 -105940735 - MIR SINE MIR -28 234 3 2431 67 0 13 chr6 83338855 83339169 -105940385 - AluY SINE Alu -1 310 1 5391 107 35 0 chr6 83339177 83340112 -105939442 - L1PA16 LINE L1 0 6166 5195 3407 182 19 4 chr6 83340113 83340788 -105938766 + L1PA16 LINE L1 4481 5165 -981 249 279 0 16 chr6 83340878 83340939 -105938615 + L2 LINE L2 3213 3272 0 224 0 0 61 chr6 83341277 83341310 -105938244 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2234 81 3 7 chr6 83341312 83341596 -105937958 - AluSq SINE Alu -30 283 1 1837 163 14 10 chr6 83341763 83342058 -105937496 - AluJo SINE Alu -16 296 1 219 69 0 0 chr6 83342399 83342428 -105937126 + (T)n Simple_repeat Simple_repeat 1 29 0 272 269 87 39 chr6 83347554 83347658 -105931896 - MIR3 SINE MIR -13 195 87 235 121 0 0 chr6 83349149 83349182 -105930372 + L1PA14 LINE L1 5319 5351 -803 978 69 0 8 chr6 83349200 83349331 -105930223 - L1PA11 LINE L1 -3 6171 6042 5388 129 0 2 chr6 83349331 83350140 -105929414 + L1PA14 LINE L1 5338 6144 -17 1355 141 8 17 chr6 83350356 83350590 -105928964 + MER46A DNA MER2_type 1 232 -4 369 304 67 31 chr6 83350711 83350935 -105928619 + L1MC4a LINE L1 5678 5909 -1899 1818 155 36 0 chr6 83350991 83351294 -105928260 + MER82 DNA MER2_type 27 340 -313 722 239 42 12 chr6 83351293 83351460 -105928094 + MER82 DNA MER2_type 476 647 -6 * 1376 203 6 60 chr6 83351965 83352280 -105927274 + AluJo SINE Alu 1 298 -4 210 171 0 0 chr6 83353107 83353148 -105926406 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr6 83353231 83353252 -105926302 + AT_rich Low_complexity Low_complexity 1 21 0 596 284 7 0 chr6 83353928 83354069 -105925485 + MER58B DNA MER1_type 172 313 -28 222 136 0 0 chr6 83354317 83354361 -105925193 + (A)n Simple_repeat Simple_repeat 1 44 0 216 175 0 0 chr6 83354376 83354416 -105925138 + GA-rich Low_complexity Low_complexity 1 40 0 311 328 67 0 chr6 83355179 83355359 -105924195 + L1ME3A LINE L1 5692 5883 -287 21 0 0 0 chr6 83355581 83355602 -105923952 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 83355652 83355673 -105923881 + AT_rich Low_complexity Low_complexity 1 21 0 187 308 108 0 chr6 83357640 83357705 -105921849 - L2 LINE L2 -58 3214 3143 208 299 60 51 chr6 83358065 83358182 -105921372 + L2 LINE L2 3155 3272 0 327 311 0 29 chr6 83359264 83359367 -105920187 + CT-rich Low_complexity Low_complexity 1 100 0 273 280 146 8 chr6 83359642 83359808 -105919746 + MIR3 SINE MIR 14 201 -37 344 250 45 38 chr6 83360782 83360914 -105918640 + MIR SINE MIR 123 255 -7 231 183 0 100 chr6 83361239 83361299 -105918255 - L2 LINE L2 -1 3271 3218 741 51 0 0 chr6 83361897 83361995 -105917559 + (TTTC)n Simple_repeat Simple_repeat 1 98 0 280 361 71 40 chr6 83362433 83362812 -105916742 - L2 LINE L2 -361 2953 2563 1431 195 0 27 chr6 83363836 83364140 -105915414 + AluJo SINE Alu 38 334 0 2185 108 0 0 chr6 83365150 83365438 -105914116 - AluSx SINE Alu -3 309 22 180 0 0 0 chr6 83365438 83365458 -105914096 + (TA)n Simple_repeat Simple_repeat 2 21 0 2240 113 3 0 chr6 83365458 83365758 -105913796 - AluSx SINE Alu -11 301 1 541 289 58 97 chr6 83366048 83366290 -105913264 + L2 LINE L2 2239 2452 -862 1374 191 20 114 chr6 83366290 83366693 -105912861 - MLT1A1 LTR MaLR 0 365 1 541 289 58 97 chr6 83366693 83366966 -105912588 + L2 LINE L2 2452 2734 -580 542 298 98 19 chr6 83367018 83367233 -105912321 - MIR SINE MIR -4 258 27 21 0 0 0 chr6 83367930 83367951 -105911603 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 83369401 83369423 -105910131 + AT_rich Low_complexity Low_complexity 1 22 0 1879 71 35 0 chr6 83369910 83370165 -105909389 + L1PA7 LINE L1 5887 6150 -4 2007 132 0 7 chr6 83371250 83371579 -105907975 + AluSx SINE Alu 1 327 0 235 231 0 0 chr6 83421804 83421856 -105857698 - MLT-int LTR MaLR -1005 730 679 2935 195 32 70 chr6 83421988 83422736 -105856818 - MLT1A2-int LTR MaLR -651 720 1 866 241 27 77 chr6 83422736 83423035 -105856519 - MLT1A2 LTR MaLR 0 374 91 1074 170 36 22 chr6 83423172 83423395 -105856159 - MLT-int LTR MaLR -1352 383 158 195 186 0 0 chr6 83423972 83424015 -105855539 + (TA)n Simple_repeat Simple_repeat 1 43 0 2501 70 0 0 chr6 83424024 83424323 -105855231 - AluY SINE Alu -12 299 1 1729 140 68 0 chr6 83424326 83424605 -105854949 - AluSx SINE Alu -14 298 1 363 315 12 61 chr6 83424736 83424901 -105854653 + MIR SINE MIR 19 175 -87 356 325 158 10 chr6 83425018 83425316 -105854238 + L3b LINE CR1 1102 1443 -140 21 36 0 0 chr6 83426236 83426264 -105853290 + AT_rich Low_complexity Low_complexity 1 28 0 216 182 0 0 chr6 83426366 83426410 -105853144 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 592 122 196 0 chr6 83426551 83426658 -105852896 + L1PB2 LINE L1 6022 6149 -2 29 28 0 0 chr6 83426658 83426694 -105852860 + AT_rich Low_complexity Low_complexity 1 36 0 1947 138 3 17 chr6 83426698 83427018 -105852536 + AluSx SINE Alu 3 312 0 586 291 148 5 chr6 83430471 83430674 -105848880 - MIR SINE MIR -24 238 7 4465 34 0 0 chr6 83431412 83431941 -105847613 + L1PA3 LINE L1 5624 6152 -3 2115 114 7 17 chr6 83431965 83432264 -105847290 + AluSx SINE Alu 1 296 -16 1791 195 29 18 chr6 83432270 83432654 -105846900 - L1MB7 LINE L1 -58 6126 5739 498 309 124 5 chr6 83433512 83433729 -105845825 - MIR SINE MIR 0 262 20 198 283 17 17 chr6 83434560 83434620 -105844934 + MIR3 SINE MIR 142 201 -7 199 361 10 41 chr6 83435326 83435423 -105844131 - MIR SINE MIR -149 113 20 2487 76 0 0 chr6 83435571 83435874 -105843680 - AluY SINE Alu -8 303 1 476 133 33 11 chr6 83436732 83436822 -105842732 + L1MA5 LINE L1 6205 6296 -4 542 218 34 7 chr6 83436847 83436994 -105842560 - Charlie1 DNA MER1_type -577 2184 2034 366 165 0 0 chr6 83437024 83437103 -105842451 + (TG)n Simple_repeat Simple_repeat 2 80 0 251 297 117 42 chr6 83437787 83438026 -105841528 - L1MC/D LINE L1 -1922 5886 5630 1297 250 13 43 chr6 83438030 83438402 -105841152 - MLT1A2 LTR MaLR -13 361 1 487 241 8 15 chr6 83438495 83438628 -105840926 - L1MC/D LINE L1 -2302 5506 5375 180 0 0 0 chr6 83438925 83438945 -105840609 + (T)n Simple_repeat Simple_repeat 1 20 0 373 356 93 29 chr6 83439578 83439783 -105839771 - L2 LINE L2 -1 3271 3054 2007 80 0 19 chr6 83440043 83440306 -105839248 - AluSc SINE Alu -13 296 39 1633 142 8 0 chr6 83442199 83442439 -105837115 + AluSq SINE Alu 1 242 -71 23 33 0 0 chr6 83443093 83443123 -105836431 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 83445172 83445194 -105834360 + AT_rich Low_complexity Low_complexity 1 22 0 527 324 87 16 chr6 83445274 83445644 -105833910 - L2 LINE L2 -1044 2270 1875 342 255 54 58 chr6 83446659 83446845 -105832709 + MIR3 SINE MIR 2 183 -56 2516 138 46 26 chr6 83446928 83447383 -105832171 - L1PA16 LINE L1 -9 6157 5694 324 227 27 13 chr6 83447751 83447826 -105831728 + Tigger3(Golem) DNA MER2_type 2953 3028 -1 221 234 64 0 chr6 83447830 83447924 -105831630 + (TA)n Simple_repeat Simple_repeat 1 100 0 749 203 0 0 chr6 83447987 83448120 -105831434 + FLAM_A SINE Alu 1 133 0 418 283 178 8 chr6 83448232 83448479 -105831075 + L1ME LINE L1 5528 5773 -397 571 143 0 0 chr6 83450000 83450098 -105829456 + L1MA9 LINE L1 6184 6281 -31 850 148 0 0 chr6 83450143 83450265 -105829289 + FLAM_C SINE Alu 3 124 -19 2305 94 3 3 chr6 83450411 83450710 -105828844 - AluSp SINE Alu -14 299 1 1636 155 32 51 chr6 83450850 83451166 -105828388 - AluJo SINE Alu -2 310 1 500 184 96 8 chr6 83452165 83452290 -105827264 + MIR SINE MIR 125 260 -2 253 347 0 13 chr6 83452385 83452460 -105827094 - MIR SINE MIR -170 92 19 466 15 30 15 chr6 83452486 83452553 -105827001 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 621 138 26 52 chr6 83453767 83453905 -105825649 - FRAM SINE Alu 0 40 1 1554 166 74 7 chr6 83453917 83454201 -105825353 - AluJb SINE Alu -9 303 1 224 262 179 36 chr6 83455380 83455548 -105824006 + L2 LINE L2 2848 3039 -233 189 0 0 0 chr6 83455628 83455649 -105823905 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 269 80 0 20 chr6 83457768 83457818 -105821736 + (TTTTTG)n Simple_repeat Simple_repeat 5 53 0 41 48 0 0 chr6 83458523 83458585 -105820969 + AT_rich Low_complexity Low_complexity 1 62 0 1360 172 122 0 chr6 83459929 83460191 -105819363 - AluJo SINE Alu -8 294 1 1618 173 22 4 chr6 83460746 83461023 -105818531 - AluJb SINE Alu -30 282 1 493 196 21 10 chr6 83461253 83461350 -105818204 - AluS SINE Alu -212 100 3 447 269 26 58 chr6 83461851 83462007 -105817547 - L2 LINE L2 -5 3308 3158 439 239 154 32 chr6 83462013 83462201 -105817353 - L2 LINE L2 0 3313 3103 226 303 0 0 chr6 83462242 83462308 -105817246 - L2 LINE L2 -438 2876 2811 233 118 0 0 chr6 83462424 83462458 -105817096 + MLT1B LTR MaLR 1 34 -356 2958 210 11 48 chr6 83462482 83463273 -105816281 + L1M1 LINE L1 3507 4285 -3280 1935 144 6 18 chr6 83463279 83463605 -105815949 + MLT1B LTR MaLR 67 388 -2 867 286 273 5 chr6 83463629 83464226 -105815328 - L2 LINE L2 -353 2961 2205 445 257 18 0 chr6 83464231 83464340 -105815214 + L2 LINE L2 3191 3301 -12 182 37 37 0 chr6 83464344 83464371 -105815183 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 383 328 56 10 chr6 83464371 83464566 -105814988 - L2 LINE L2 -1126 2188 1985 402 274 26 79 chr6 83465076 83465266 -105814288 + L2 LINE L2 3134 3313 0 322 341 82 8 chr6 83468150 83468551 -105811003 + MARNA DNA Mariner 83 536 -50 301 248 214 34 chr6 83469110 83469227 -105810327 - L2 LINE L2 0 3313 3176 1072 134 21 0 chr6 83469462 83469649 -105809905 + L1MA6 LINE L1 6098 6288 -12 2489 73 7 0 chr6 83470653 83470956 -105808598 - AluSc SINE Alu -4 305 1 197 296 0 0 chr6 83471234 83471288 -105808266 - L2 LINE L2 0 3272 3219 364 349 32 21 chr6 83472881 83473070 -105806484 - MIR3 SINE MIR -3 205 15 573 297 24 73 chr6 83473197 83473443 -105806111 + MIR SINE MIR 17 250 -12 385 234 14 110 chr6 83473703 83473912 -105805642 + MER5A DNA MER1_type 1 189 0 1053 191 30 7 chr6 83474053 83474444 -105805110 + MLT1D LTR MaLR 1 438 -67 358 308 83 8 chr6 83474640 83474760 -105804794 + MIR SINE MIR 13 141 -121 228 111 0 0 chr6 83474979 83475015 -105804539 + (TAA)n Simple_repeat Simple_repeat 3 38 0 1946 147 3 20 chr6 83475056 83475362 -105804192 - AluJb SINE Alu -11 301 1 282 254 77 23 chr6 83475432 83475562 -105803992 + MIR SINE MIR 124 260 -2 206 152 0 22 chr6 83475831 83475877 -105803677 + CT-rich Low_complexity Low_complexity 1 45 0 1885 153 11 26 chr6 83477670 83478022 -105801532 + L1MA7 LINE L1 5938 6284 -7 2370 76 0 10 chr6 83478415 83478719 -105800835 - AluY SINE Alu -10 301 1 624 144 0 51 chr6 83479039 83479157 -105800397 - FRAM SINE Alu -9 167 56 251 309 37 52 chr6 83480238 83480374 -105799180 - MLT1H LTR MaLR -378 171 38 1104 267 58 48 chr6 83481176 83481507 -105798047 - L1MC4a LINE L1 -1857 5951 5625 180 0 0 0 chr6 83481507 83481527 -105798027 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1738 109 77 0 chr6 83481527 83481775 -105797779 - AluSx SINE Alu -45 267 1 1104 267 58 48 chr6 83481775 83481921 -105797633 - L1MC4a LINE L1 -2182 5626 5468 1581 203 14 0 chr6 83482085 83482361 -105797193 + AluJo SINE Alu 1 280 -32 203 136 45 0 chr6 83482363 83482407 -105797147 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 437 321 95 32 chr6 83482625 83483255 -105796299 - L1MC4a LINE L1 -1088 5058 4389 657 266 33 66 chr6 83483573 83483847 -105795707 - MLT1J LTR MaLR -13 498 234 362 150 15 15 chr6 83483957 83484031 -105795523 - MLT1J LTR MaLR -445 66 2 574 326 207 29 chr6 83484756 83485880 -105793674 - L2 LINE L2 -454 2860 1536 247 321 62 80 chr6 83485887 83486261 -105793293 - L2 LINE L2 -1910 1404 1038 1485 56 6 0 chr6 83486519 83486725 -105792829 - AluY SINE Alu 0 308 102 25 31 0 0 chr6 83486969 83487001 -105792553 + AT_rich Low_complexity Low_complexity 1 32 0 193 263 237 0 chr6 83487035 83487111 -105792443 + MIR3 SINE MIR 108 201 -7 267 31 0 0 chr6 83488285 83488317 -105791237 + (CA)n Simple_repeat Simple_repeat 2 33 0 564 245 82 10 chr6 83488366 83488562 -105790992 + L1ME LINE L1 5576 5785 -336 2719 7 0 0 chr6 83488705 83489005 -105790549 - AluYa5 SINE Alu -11 300 1 2041 118 3 14 chr6 83489167 83489464 -105790090 - AluSx SINE Alu -16 296 3 22 56 0 0 chr6 83489508 83489544 -105790010 + AT_rich Low_complexity Low_complexity 1 36 0 227 296 0 0 chr6 83489767 83489838 -105789716 - MER112 DNA MER1_type -8 252 182 228 100 50 0 chr6 83489963 83490003 -105789551 - MER112 DNA MER1_type -141 119 78 2344 79 0 0 chr6 83490080 83490372 -105789182 + AluY SINE Alu 1 292 -19 31 58 0 0 chr6 83490584 83490636 -105788918 + AT_rich Low_complexity Low_complexity 1 52 0 3504 136 17 3 chr6 83490850 83491439 -105788115 + L1MC1 LINE L1 5736 6332 -1 23 54 0 0 chr6 83492018 83492055 -105787499 + AT_rich Low_complexity Low_complexity 1 37 0 729 248 0 0 chr6 83492095 83492256 -105787298 - MLT1E1 LTR MaLR 0 654 494 236 324 144 9 chr6 83492391 83492502 -105787052 - L2 LINE L2 -5 3308 3183 399 268 137 60 chr6 83493651 83493819 -105785735 - MER5A DNA MER1_type 0 189 9 44 46 0 0 chr6 83495488 83495553 -105784001 + AT_rich Low_complexity Low_complexity 1 65 0 26 30 0 0 chr6 83495671 83495704 -105783850 + AT_rich Low_complexity Low_complexity 1 33 0 831 213 88 88 chr6 83496050 83496459 -105783095 - MLT1I LTR MaLR 0 409 1 2352 93 3 0 chr6 83496735 83497045 -105782509 + AluSx SINE Alu 1 311 -1 1333 217 24 96 chr6 83497882 83498384 -105781170 - MLT1C LTR MaLR -1 466 1 1324 206 155 7 chr6 83499274 83499681 -105779873 + Charlie4a DNA MER1_type 41 507 -1 201 39 0 0 chr6 83500385 83500411 -105779143 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 420 302 151 25 chr6 83500557 83500716 -105778838 + MER5A DNA MER1_type 9 187 -2 24 0 0 0 chr6 83501928 83501952 -105777602 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr6 83502916 83502944 -105776610 + AT_rich Low_complexity Low_complexity 1 28 0 283 267 0 0 chr6 83503742 83503817 -105775737 - MER116 DNA Mariner -5 75 1 21 36 0 0 chr6 83503858 83503886 -105775668 + AT_rich Low_complexity Low_complexity 1 28 0 262 357 53 94 chr6 83504311 83504650 -105774904 - L2 LINE L2 -14 3258 2934 187 356 14 0 chr6 83504923 83504996 -105774558 + MIR3 SINE MIR 135 208 0 22 35 0 0 chr6 83505182 83505211 -105774343 + AT_rich Low_complexity Low_complexity 1 29 0 2664 233 76 31 chr6 83505242 83506106 -105773448 - L1ME1 LINE L1 -79 6882 5983 1843 219 53 19 chr6 83506100 83506625 -105772929 - L1ME1 LINE L1 -1869 5072 4530 * 949 220 9 28 chr6 83506645 83506863 -105772691 + MER20 DNA MER1_type 1 214 -5 2466 216 38 65 chr6 83506887 83508104 -105771450 - L1ME1 LINE L1 -3382 3559 2411 1963 209 48 21 chr6 83508099 83508577 -105770977 - L1ME1 LINE L1 -5908 515 25 * 2194 145 8 8 chr6 83509564 83509929 -105769625 - MER47A DNA MER2_type 0 366 2 192 179 0 0 chr6 83512053 83512092 -105767462 + (CA)n Simple_repeat Simple_repeat 1 39 0 306 73 0 0 chr6 83512654 83512695 -105766859 + (TG)n Simple_repeat Simple_repeat 1 41 0 29 60 0 0 chr6 83513803 83513853 -105765701 + AT_rich Low_complexity Low_complexity 1 50 0 235 284 80 45 chr6 83514537 83514625 -105764929 + MIR SINE MIR 17 95 -113 2115 106 14 3 chr6 83566667 83566959 -105712595 + AluSx SINE Alu 1 295 -17 1144 205 20 0 chr6 83567372 83567572 -105711982 - MER58A DNA MER1_type 0 224 21 354 123 46 0 chr6 83568377 83568442 -105711112 - L1MC1 LINE L1 -17 6316 6249 227 336 28 28 chr6 83568700 83568807 -105710747 + MIR SINE MIR 40 146 -62 2497 69 0 18 chr6 83569010 83569342 -105710212 + L1PA8A LINE L1 5806 6131 0 7258 41 6 1 chr6 83569707 83571156 -105708398 - L1PA5 LINE L1 -4 6150 4691 1602 192 7 10 chr6 83571416 83571724 -105707830 - AluJo SINE Alu -1 311 5 422 192 0 0 chr6 83572253 83572331 -105707223 - MER116 DNA Mariner 0 80 3 228 122 0 0 chr6 83573547 83573588 -105705966 + (TG)n Simple_repeat Simple_repeat 2 42 0 197 329 95 7 chr6 83573670 83573807 -105705747 - L2 LINE L2 -1183 2131 1983 562 236 0 0 chr6 83573807 83573917 -105705637 + FLAM_C SINE Alu 1 110 -33 248 311 38 38 chr6 83574085 83574191 -105705363 + L2 LINE L2 3204 3309 -4 2044 119 6 29 chr6 83575116 83575427 -105704127 - AluSq SINE Alu -9 304 1 265 309 8 24 chr6 83575706 83575829 -105703725 + MIR3 SINE MIR 88 208 0 2007 189 13 13 chr6 83576218 83576604 -105702950 + MER82 DNA MER2_type 8 393 -260 680 144 27 0 chr6 83576611 83576722 -105702832 + FLAM_C SINE Alu 18 131 -12 901 258 53 23 chr6 83576763 83577027 -105702527 + MER82 DNA MER2_type 381 652 -1 1963 142 3 7 chr6 83577777 83578079 -105701475 + AluSx SINE Alu 1 301 -11 186 43 0 0 chr6 83578155 83578178 -105701376 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6510 87 8 0 chr6 83578672 83579683 -105699871 - L1PA8 LINE L1 -2 6170 5163 323 314 105 20 chr6 83579703 83580009 -105699545 - L1ME4a LINE L1 -220 5901 5570 30 69 0 0 chr6 83580042 83580100 -105699454 + AT_rich Low_complexity Low_complexity 1 58 0 586 126 0 21 chr6 83580156 83580169 -105699385 - AluSg/x SINE Alu -1 311 299 1319 97 0 10 chr6 83580169 83580364 -105699190 - L1PB1 LINE L1 0 6151 5959 586 126 0 21 chr6 83580364 83580445 -105699109 - AluSg/x SINE Alu -13 299 219 556 185 0 0 chr6 83580700 83580792 -105698762 + FLAM_C SINE Alu 34 125 -18 590 265 153 59 chr6 83581319 83581881 -105697673 + L1MEd LINE L1 594 1208 -4911 379 303 157 11 chr6 83581927 83582105 -105697449 + HAL1 LINE L1 1366 1569 -938 2146 111 63 26 chr6 83582464 83582815 -105696739 - THE1B LTR MaLR 0 364 1 311 255 72 28 chr6 83583211 83583462 -105696092 + L1MEd LINE L1 2134 2395 -3734 270 333 147 28 chr6 83583519 83583900 -105695654 - L2 LINE L2 -191 3081 2648 1146 257 43 105 chr6 83584134 83584686 -105694868 - L2 LINE L2 0 3313 2777 206 283 0 0 chr6 83584871 83584917 -105694637 - L2 LINE L2 -17 3255 3210 672 187 0 0 chr6 83585039 83585178 -105694376 + L1MA4 LINE L1 6157 6295 -5 1494 182 0 35 chr6 83585426 83585745 -105693809 - L1MA10 LINE L1 -2 6332 6025 428 376 58 21 chr6 83586374 83586704 -105692850 + L3 LINE CR1 225 566 -1011 304 258 0 0 chr6 83589070 83589132 -105690422 - L2 LINE L2 0 3272 3211 237 222 0 0 chr6 83590297 83590342 -105689212 - MER5A DNA MER1_type -67 122 78 2215 51 3 38 chr6 83590342 83590635 -105688919 + AluY SINE Alu 22 304 -7 265 139 58 23 chr6 83590956 83591042 -105688512 + (TA)n Simple_repeat Simple_repeat 1 89 0 254 341 89 8 chr6 83591778 83591901 -105687653 - MER5A DNA MER1_type -1 188 56 273 244 89 0 chr6 83591934 83592024 -105687530 - MER94 DNA DNA -31 103 6 249 57 0 0 chr6 83592255 83592290 -105687264 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 181 247 321 0 chr6 83592500 83592581 -105686973 + MIR3 SINE MIR 97 203 -5 25 51 0 0 chr6 83593458 83593497 -105686057 + AT_rich Low_complexity Low_complexity 1 39 0 675 204 52 57 chr6 83593920 83594080 -105685474 + L1MB7 LINE L1 5956 6116 -68 2077 137 0 16 chr6 83594080 83594386 -105685168 - AluSx SINE Alu -10 302 2 675 204 52 57 chr6 83594386 83594455 -105685099 + L1MB7 LINE L1 6116 6184 0 241 356 0 0 chr6 83594462 83594521 -105685033 - L2 LINE L2 -89 3183 3125 341 293 10 0 chr6 83595749 83595848 -105683706 + MIR3 SINE MIR 109 208 0 547 264 184 15 chr6 83596397 83596598 -105682956 + MIR SINE MIR 2 236 -26 836 139 7 0 chr6 83597003 83597147 -105682407 + CT-rich Low_complexity Low_complexity 1 145 0 438 324 18 18 chr6 83597587 83597757 -105681797 - MIR SINE MIR -1 261 92 1484 23 0 0 chr6 83598325 83598499 -105681055 - L1PA4 LINE L1 -2 6153 5980 2810 10 0 0 chr6 83599039 83599346 -105680208 + AluY SINE Alu 1 307 -4 216 333 24 24 chr6 83599534 83599618 -105679936 - MER91B DNA MER1_type -11 179 96 1017 242 28 36 chr6 83599632 83600020 -105679534 - L1ME LINE L1 -5229 841 457 1251 162 43 70 chr6 83600032 83600280 -105679274 - L1MA7 LINE L1 0 6291 6062 250 111 0 0 chr6 83600280 83600316 -105679238 + tRNA-Gly-GGC tRNA tRNA 1 36 -38 1251 162 43 70 chr6 83600316 83600439 -105679115 - L1MA7 LINE L1 -229 6062 5937 1748 131 7 4 chr6 83600447 83600722 -105678832 - L1MA7 LINE L1 -452 5839 5564 496 244 15 30 chr6 83600720 83600855 -105678699 - L1ME LINE L1 -5623 447 315 * 599 253 86 20 chr6 83600875 83601073 -105678481 - L1ME LINE L1 -5854 216 6 193 301 62 68 chr6 83601348 83601524 -105678030 - L3b LINE CR1 -87 1496 1322 21 36 0 0 chr6 83601851 83601879 -105677675 + AT_rich Low_complexity Low_complexity 1 28 0 305 348 18 9 chr6 83602821 83602933 -105676621 - MIR SINE MIR -62 146 34 6290 81 3 0 chr6 83602943 83603991 -105675563 - L1PA7 LINE L1 -587 5567 4516 4144 48 68 12 chr6 83603991 83604544 -105675010 + L1PA7 LINE L1 5564 6152 -2 405 257 135 20 chr6 83606281 83606429 -105673125 - MIR SINE MIR -58 204 40 1661 159 33 7 chr6 83606622 83606919 -105672635 + AluSg SINE Alu 3 306 0 22 0 0 0 chr6 83607509 83607531 -105672023 + AT_rich Low_complexity Low_complexity 1 22 0 1647 126 18 56 chr6 83608077 83608291 -105671263 - L1PB3 LINE L1 -7 6147 5926 690 100 0 0 chr6 83608291 83608391 -105671163 + (TA)n Simple_repeat Simple_repeat 2 101 0 1890 152 0 3 chr6 83608396 83608679 -105670875 - AluJb SINE Alu -30 282 1 1647 126 18 56 chr6 83608679 83608744 -105670810 - L1PB3 LINE L1 -232 5922 5873 2447 61 0 16 chr6 83608929 83609239 -105670315 - AluSx SINE Alu -7 305 1 617 188 26 8 chr6 83609466 83609583 -105669971 - FLAM_A SINE Alu -14 119 1 269 267 89 30 chr6 83609593 83609694 -105669860 - FRAM SINE Alu -12 154 48 255 197 28 56 chr6 83609698 83609769 -105669785 + AluSc SINE Alu 140 180 -119 402 21 0 0 chr6 83609946 83609993 -105669561 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 246 313 78 17 chr6 83609999 83610114 -105669440 - L2 LINE L2 -10 3262 3141 614 236 67 23 chr6 83611882 83612053 -105667501 + MIR SINE MIR 1 172 -36 659 295 27 0 chr6 83612137 83612320 -105667234 - MIR SINE MIR -73 189 2 263 297 77 0 chr6 83612337 83612428 -105667126 + MIR SINE MIR 165 262 0 403 239 30 82 chr6 83612635 83612769 -105666785 - L2 LINE L2 0 3313 3187 1650 44 0 0 chr6 83613494 83613700 -105665854 - L1PA4 LINE L1 0 6155 5950 2091 123 3 3 chr6 83613700 83613992 -105665562 - AluSx SINE Alu -16 296 5 368 75 0 0 chr6 83613996 83614049 -105665505 - L1MA7 LINE L1 -59 6232 6180 312 269 110 44 chr6 83614143 83614325 -105665229 - MIR SINE MIR -66 196 3 24 32 0 0 chr6 83616176 83616207 -105663347 + AT_rich Low_complexity Low_complexity 1 31 0 2001 126 3 22 chr6 83619507 83619824 -105659730 - AluSx SINE Alu -1 311 1 318 300 17 17 chr6 83620596 83620716 -105658838 - MIR SINE MIR -97 165 46 2027 125 11 0 chr6 83621138 83621442 -105658112 - AluSx SINE Alu 0 307 1 180 0 0 0 chr6 83621931 83621951 -105657603 + (TAAAAA)n Simple_repeat Simple_repeat 6 25 0 186 71 0 0 chr6 83622757 83622785 -105656769 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1561 132 16 20 chr6 83623209 83623493 -105656061 + AluSg SINE Alu 41 323 0 21 0 0 0 chr6 83623594 83623615 -105655939 + AT_rich Low_complexity Low_complexity 1 21 0 283 267 44 44 chr6 83625820 83625910 -105653644 - L2 LINE L2 -23 3290 3201 206 294 15 81 chr6 83626244 83626282 -105653272 - MIR3 SINE MIR -17 191 152 499 283 0 33 chr6 83626282 83626427 -105653127 + MER5B DNA MER1_type 1 140 -38 2225 123 0 0 chr6 83626427 83626727 -105652827 + AluSx SINE Alu 1 300 -12 499 283 0 33 chr6 83626727 83626765 -105652789 + MER5B DNA MER1_type 140 178 0 206 294 15 81 chr6 83626765 83626862 -105652692 - MIR3 SINE MIR -56 152 65 811 179 0 14 chr6 83627192 83627337 -105652217 + FLAM_C SINE Alu 1 143 0 287 171 0 49 chr6 83627340 83627422 -105652132 + A-rich Low_complexity Low_complexity 1 78 0 306 276 171 26 chr6 83627627 83627779 -105651775 + MIR SINE MIR 72 245 -17 707 156 0 16 chr6 83627948 83628105 -105651449 - AluSg/x SINE Alu 0 310 156 297 0 0 0 chr6 83629333 83629366 -105650188 + (CA)n Simple_repeat Simple_repeat 2 34 0 332 345 20 20 chr6 83630697 83630845 -105648709 + L2 LINE L2 3166 3313 0 2133 199 98 2 chr6 83633931 83634372 -105645182 - MLT1D LTR MaLR -4 501 19 21 0 0 0 chr6 83635553 83635574 -105643980 + AT_rich Low_complexity Low_complexity 1 21 0 228 105 0 0 chr6 83635997 83636023 -105643531 + (TC)n Simple_repeat Simple_repeat 1 29 -9 189 0 0 0 chr6 83636023 83636044 -105643510 + (TG)n Simple_repeat Simple_repeat 2 22 0 228 105 0 0 chr6 83636044 83636055 -105643499 + (TC)n Simple_repeat Simple_repeat 28 38 0 221 259 0 93 chr6 83636156 83636264 -105643290 - MIR SINE MIR -41 221 124 181 0 0 65 chr6 83636364 83636395 -105643159 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 418 251 40 99 chr6 83636471 83636694 -105642860 + L2 LINE L2 3074 3283 -30 185 0 40 0 chr6 83637040 83637065 -105642489 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 6819 144 8 26 chr6 83637832 83640144 -105639410 - L1MA5A LINE L1 -12 6285 4019 232 218 23 0 chr6 83640177 83640264 -105639290 + (TA)n Simple_repeat Simple_repeat 1 89 0 202 121 30 0 chr6 83640666 83640699 -105638855 + CT-rich Low_complexity Low_complexity 1 34 0 207 278 0 0 chr6 83640759 83640813 -105638741 - L2 LINE L2 -1 3271 3218 8413 40 8 1 chr6 83641167 83642977 -105636577 + L1PA5 LINE L1 4337 6152 -2 2183 183 32 15 chr6 83642991 83643460 -105636094 + L1P LINE L1 4395 4871 -1275 693 183 28 13 chr6 83643745 83643911 -105635643 + MER20 DNA MER1_type 55 219 0 363 204 45 11 chr6 83644594 83644682 -105634872 + MIR SINE MIR 106 196 -66 409 268 63 21 chr6 83645141 83645331 -105634223 + L1MC4a LINE L1 5729 5926 -1882 260 244 35 12 chr6 83645483 83645569 -105633985 + L1MC4 LINE L1 7929 8016 -26 23 54 0 0 chr6 83646322 83646359 -105633195 + AT_rich Low_complexity Low_complexity 1 37 0 248 366 97 0 chr6 83646542 83646676 -105632878 - MER117 DNA MER1_type -50 147 1 666 290 109 0 chr6 83646940 83647161 -105632393 - MIR SINE MIR -11 251 7 1159 231 41 0 chr6 83647162 83647430 -105632124 - MER63B DNA MER1_type -157 279 1 1325 187 13 4 chr6 83647815 83648050 -105631504 - AluJo SINE Alu -27 285 49 655 128 0 0 chr6 83648553 83648647 -105630907 + MLT2A1 LTR ERVL 209 302 -142 595 184 55 0 chr6 83648641 83648781 -105630773 + MLT2A2 LTR ERVL 293 483 -71 * 9137 205 24 59 chr6 83648953 83653372 -105626182 + L1PB1 LINE L1 1392 5617 -1245 6268 72 0 0 chr6 83653405 83654216 -105625338 - L1PA7 LINE L1 0 6154 5344 6163 93 6 6 chr6 83654216 83655469 -105624085 + L1PB1 LINE L1 5607 6859 -8 698 249 58 19 chr6 83655588 83655793 -105623761 + L2 LINE L2 3101 3313 0 252 313 139 40 chr6 83656043 83656423 -105623131 - L2 LINE L2 -823 2491 2074 2080 132 3 3 chr6 83656573 83656869 -105622685 + AluSx SINE Alu 3 298 -14 216 395 9 9 chr6 83657498 83657607 -105621947 - MIR SINE MIR -130 132 24 236 320 60 0 chr6 83658403 83658503 -105621051 + L2 LINE L2 2568 2673 -641 * 255 246 0 31 chr6 83658480 83658545 -105621009 - L2 LINE L2 -2 3311 3249 1530 188 27 33 chr6 83658570 83658937 -105620617 - MLT1A1 LTR MaLR 0 365 1 290 341 0 0 chr6 83658964 83659052 -105620502 + L2 LINE L2 2684 2771 -543 387 0 0 0 chr6 83659507 83659550 -105620004 + (CA)n Simple_repeat Simple_repeat 1 43 0 259 286 0 0 chr6 83659788 83659851 -105619703 + MIR3 SINE MIR 125 187 -21 1038 241 41 26 chr6 83661632 83661977 -105617577 - L1MA9 LINE L1 -38 6274 5925 21 0 0 0 chr6 83662423 83662444 -105617110 + AT_rich Low_complexity Low_complexity 1 21 0 1030 110 7 0 chr6 83662786 83662941 -105616613 - L1PA13 LINE L1 -3 6160 6005 1892 264 28 0 chr6 83663188 83663719 -105615835 + L1PA5 LINE L1 6 551 -6312 15291 185 27 16 chr6 83663746 83668936 -105610618 + L1PA5 LINE L1 609 6407 -463 1438 56 0 35 chr6 83668936 83669132 -105610422 + L1PA5 LINE L1 6676 6865 -5 15291 185 27 16 chr6 83669132 83669596 -105609958 + L1PA5 LINE L1 6407 6865 -5 273 80 16 80 chr6 83669597 83669722 -105609832 + (TA)n Simple_repeat Simple_repeat 1 117 0 921 178 35 9 chr6 83669767 83669965 -105609589 + L1PB1 LINE L1 5776 5960 -191 1461 287 144 42 chr6 83670381 83671586 -105607968 + L2 LINE L2 1976 3313 0 1891 152 7 13 chr6 83674338 83674640 -105604914 + AluJb SINE Alu 4 303 -9 270 143 0 0 chr6 83675974 83676016 -105603538 - Alu SINE Alu -17 285 244 347 313 57 5 chr6 83676873 83677065 -105602489 - L2 LINE L2 -397 2917 2716 1840 164 11 77 chr6 83677136 83677279 -105602275 - L1MA7 LINE L1 0 6291 6140 1999 141 14 0 chr6 83677279 83677569 -105601985 + AluSx SINE Alu 1 294 -18 1840 164 11 77 chr6 83677569 83677869 -105601685 - L1MA7 LINE L1 -151 6140 5877 1056 176 25 0 chr6 83677869 83678068 -105601486 + L1 LINE L1 3894 4097 -2049 * 9767 172 114 16 chr6 83678066 83680868 -105598686 + L1MA2 LINE L1 1642 4967 -2598 2386 76 0 13 chr6 83680868 83681183 -105598371 + AluY SINE Alu 1 311 0 9767 172 114 16 chr6 83681183 83682281 -105597273 + L1MA2 LINE L1 4967 5957 -1608 4171 122 14 63 chr6 83682381 83683452 -105596102 + L1MA2 LINE L1 6342 7363 -361 3125 57 0 0 chr6 83683459 83683848 -105595706 + L1PA5 LINE L1 5765 6153 -1 1883 173 11 14 chr6 83683848 83684213 -105595341 + L1MA2 LINE L1 7355 7723 0 2359 146 16 2 chr6 83684235 83684660 -105594894 + L1 LINE L1 4070 4500 -1646 211 368 37 98 chr6 83684752 83685100 -105594454 + L2 LINE L2 2945 3271 -1 1926 152 56 48 chr6 83686592 83686968 -105592586 - MLT1B LTR MaLR -4 386 8 202 311 134 0 chr6 83686987 83687106 -105592448 + MIR SINE MIR 122 256 -6 22 0 0 0 chr6 83687706 83687728 -105591826 + AT_rich Low_complexity Low_complexity 1 22 0 2261 49 84 0 chr6 83690645 83690931 -105588623 - AluY SINE Alu -1 310 1 643 227 58 17 chr6 83693667 83693839 -105585715 + MIR SINE MIR 63 241 -21 666 294 127 37 chr6 83693864 83694398 -105585156 - L2 LINE L2 -7 3306 2727 2304 102 3 6 chr6 83694929 83695243 -105584311 - AluSq SINE Alu 0 313 1 502 41 27 0 chr6 83696147 83696220 -105583334 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 424 319 115 50 chr6 83697149 83697653 -105581901 + L2 LINE L2 2244 2780 -534 1272 225 128 0 chr6 83697963 83698221 -105581333 - AluJo SINE Alu -9 293 3 410 295 72 39 chr6 83698998 83699205 -105580349 - L2 LINE L2 -50 3263 3050 242 345 55 27 chr6 83699210 83699320 -105580234 - L2 LINE L2 -14 3299 3187 308 325 37 43 chr6 83699432 83699595 -105579959 - L2 LINE L2 -189 3083 2922 4438 168 45 20 chr6 83699753 83700585 -105578969 + MER21B LTR ERV1 1 852 -11 202 304 43 0 chr6 83701977 83702046 -105577508 + L2 LINE L2 3201 3272 0 282 331 41 33 chr6 83703395 83703516 -105576038 + L2 LINE L2 3151 3272 0 994 300 104 18 chr6 83704197 83704637 -105574917 + L2 LINE L2 2836 3313 0 256 287 174 30 chr6 83706897 83707064 -105572490 + MIR SINE MIR 37 227 -35 266 292 94 0 chr6 83707618 83707714 -105571840 - MIR SINE MIR -21 241 137 1225 38 0 38 chr6 83707738 83707898 -105571656 - L1PA10 LINE L1 0 6168 6015 9126 196 40 49 chr6 83707926 83711291 -105568263 - L1MB3 LINE L1 -1 6418 3104 2184 131 0 7 chr6 83711291 83711596 -105567958 + AluSx SINE Alu 1 303 -9 9126 196 40 49 chr6 83711596 83712671 -105566883 - L1MB3 LINE L1 -3315 3104 2021 2807 161 22 10 chr6 83712661 83713163 -105566391 - L1MB3 LINE L1 -5857 527 20 * 370 275 78 42 chr6 83713164 83713306 -105566248 - MIR SINE MIR -114 148 2 2235 124 0 3 chr6 83713906 83714213 -105565341 - AluSx SINE Alu -6 306 1 21 0 0 0 chr6 83714506 83714527 -105565027 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr6 83717186 83717224 -105562330 + AT_rich Low_complexity Low_complexity 1 38 0 752 246 6 12 chr6 83717733 83717904 -105561650 + MER58A DNA MER1_type 1 170 -54 357 257 47 112 chr6 83718006 83718220 -105561334 - MIR SINE MIR 0 262 63 1685 136 3 39 chr6 83718425 83718711 -105560843 - AluJo SINE Alu -2 310 35 184 277 0 0 chr6 83720000 83720047 -105559507 - L2 LINE L2 -925 2389 2343 623 204 149 37 chr6 83720642 83720979 -105558575 + Charlie4a DNA MER1_type 131 501 -7 25 0 0 0 chr6 83721263 83721288 -105558266 + AT_rich Low_complexity Low_complexity 1 25 0 2419 74 0 7 chr6 83721832 83722129 -105557425 - AluY SINE Alu -16 295 1 2391 91 0 25 chr6 83722771 83723089 -105556465 - AluY SINE Alu -1 310 1 537 359 65 25 chr6 83723381 83723813 -105555741 - L3 LINE CR1 -45 1532 1084 208 296 19 19 chr6 83724489 83724543 -105555011 - L2 LINE L2 -85 3187 3134 228 330 73 18 chr6 83724697 83724806 -105554748 - L3 LINE CR1 -583 994 880 656 338 52 34 chr6 83724983 83725188 -105554366 - L3 LINE CR1 -1066 511 294 2267 120 3 0 chr6 83725188 83725496 -105554058 - AluSq SINE Alu -4 309 1 656 338 52 34 chr6 83725496 83725675 -105553879 - L3 LINE CR1 -1283 294 120 40970 33 21 1 chr6 83725896 83731785 -105547769 + L1HS LINE L1 1 6012 -143 534 295 77 58 chr6 83732089 83732350 -105547204 - L2 LINE L2 -12 3301 3036 881 275 96 37 chr6 83732381 83733032 -105546522 - L2 LINE L2 -958 2356 1583 698 288 130 32 chr6 83733036 83733171 -105546383 - L2 LINE L2 -2040 1274 1154 2508 82 3 0 chr6 83733171 83733477 -105546077 + AluSq SINE Alu 1 307 -6 698 288 130 32 chr6 83733477 83733741 -105545813 - L2 LINE L2 -2160 1154 836 520 238 6 6 chr6 83734097 83734261 -105545293 + (CAT)n Simple_repeat Simple_repeat 2 165 0 309 353 147 0 chr6 83734288 83734444 -105545110 + L2 LINE L2 2928 3106 -207 531 216 0 0 chr6 83734453 83734564 -105544990 - FRAM SINE Alu -1 175 65 248 222 42 69 chr6 83734602 83734674 -105544880 + L2 LINE L2 3158 3227 -86 235 200 0 0 chr6 83736024 83736074 -105543480 - HAL1 LINE L1 -1 2506 2457 418 267 86 36 chr6 83736126 83736246 -105543308 - HAL1 LINE L1 -171 2336 2223 333 100 0 0 chr6 83736246 83736296 -105543258 + (CA)n Simple_repeat Simple_repeat 1 50 0 418 267 86 36 chr6 83736296 83736396 -105543158 - HAL1 LINE L1 -284 2223 2105 1706 234 138 41 chr6 83736415 83737146 -105542408 - HAL1 LINE L1 -1701 806 5 180 0 0 0 chr6 83737941 83737961 -105541593 + (T)n Simple_repeat Simple_repeat 1 20 0 213 163 70 23 chr6 83738879 83738965 -105540589 + (TACTG)n Simple_repeat Simple_repeat 2 91 0 189 282 42 56 chr6 83739350 83739421 -105540133 - MIR SINE MIR -117 145 76 312 288 90 36 chr6 83739568 83739679 -105539875 + L2 LINE L2 3156 3272 0 203 146 0 42 chr6 83739841 83739889 -105539665 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 385 349 117 28 chr6 83742485 83742809 -105536745 + L2 LINE L2 2622 2974 -340 254 295 88 47 chr6 83742887 83743080 -105536474 + L2 LINE L2 3113 3313 0 306 291 0 38 chr6 83743742 83743821 -105535733 - MER81 DNA DNA -36 78 3 1213 151 64 17 chr6 83744670 83744958 -105534596 + L1PA16 LINE L1 5834 6156 -9 5238 142 28 27 chr6 83744971 83745429 -105534125 + L1MA8 LINE L1 5317 5773 -518 2333 109 0 0 chr6 83745429 83745741 -105533813 + AluSx SINE Alu 1 312 0 5238 142 28 27 chr6 83745741 83746256 -105533298 + L1MA8 LINE L1 5773 6291 0 527 274 45 57 chr6 83746822 83747037 -105532517 - MIR SINE MIR -15 247 35 1729 139 36 7 chr6 83748242 83748523 -105531031 - AluSx SINE Alu -23 289 1 21 71 0 0 chr6 83748848 83748890 -105530664 + AT_rich Low_complexity Low_complexity 1 42 0 716 259 47 47 chr6 83748904 83749159 -105530395 + MIR SINE MIR 8 262 0 221 247 12 0 chr6 83749532 83749613 -105529941 + GA-rich Low_complexity Low_complexity 5 86 0 286 228 195 16 chr6 83750243 83750366 -105529188 + MER103 DNA DNA 2 146 -20 1079 151 22 5 chr6 83750479 83750664 -105528890 + MER20 DNA MER1_type 32 219 0 2235 92 0 3 chr6 83750772 83751100 -105528454 + AluSc SINE Alu 1 327 0 23 33 0 0 chr6 83751771 83751801 -105527753 + AT_rich Low_complexity Low_complexity 1 30 0 207 191 0 0 chr6 83752823 83752865 -105526689 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 56 0 0 chr6 83752947 83752983 -105526571 + AT_rich Low_complexity Low_complexity 1 36 0 336 330 32 72 chr6 83753246 83753525 -105526029 - L3b LINE CR1 -184 1399 1132 29 0 0 0 chr6 83753914 83753943 -105525611 + AT_rich Low_complexity Low_complexity 1 29 0 245 309 29 44 chr6 83754236 83754372 -105525182 + MIR SINE MIR 128 261 -1 310 282 100 41 chr6 83754594 83754888 -105524666 + L1ME LINE L1 4212 4487 -1659 1848 194 28 3 chr6 83754888 83755244 -105524310 + MLT1A1 LTR MaLR 1 365 0 310 282 100 41 chr6 83755244 83755819 -105523735 + L1ME LINE L1 4487 5142 -1004 760 303 31 34 chr6 83755962 83756375 -105523179 + L1ME LINE L1 5320 5731 -439 467 234 56 100 chr6 83756731 83756962 -105522592 + L1MC4 LINE L1 6698 6918 -1124 2278 95 7 3 chr6 83757125 83757429 -105522125 - AluSq SINE Alu -8 305 1 6206 62 4 4 chr6 83757567 83758373 -105521181 + L1PA8 LINE L1 5367 6172 0 23 68 0 0 chr6 83759627 83759671 -105519883 + AT_rich Low_complexity Low_complexity 1 44 0 496 326 14 5 chr6 83760259 83760480 -105519074 + MARNA DNA Mariner 245 467 -119 226 214 0 0 chr6 83760734 83760776 -105518778 + L2 LINE L2 3211 3252 -20 22 0 0 0 chr6 83761364 83761386 -105518168 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr6 83761578 83761614 -105517940 + AT_rich Low_complexity Low_complexity 1 36 0 1498 155 101 8 chr6 83764645 83764928 -105514626 + AluJb SINE Alu 1 307 0 1518 129 54 27 chr6 83766059 83766353 -105513201 - L1MA3 LINE L1 -5 6300 5999 192 347 68 48 chr6 83766769 83766916 -105512638 - L3 LINE CR1 -88 1489 1340 * 316 276 23 161 chr6 83766912 83767086 -105512468 - MER91A DNA MER1_type -12 184 35 188 319 43 21 chr6 83767118 83767212 -105512342 - L3 LINE CR1 -227 1350 1255 243 79 0 0 chr6 83767223 83767261 -105512293 + (TAG)n Simple_repeat Simple_repeat 1 38 0 1380 214 22 0 chr6 83767269 83767540 -105512014 - AluJo SINE Alu -35 277 1 535 331 62 29 chr6 83767545 83767820 -105511734 - L3 LINE CR1 -312 1265 982 1820 162 13 10 chr6 83768641 83768943 -105510611 + AluJb SINE Alu 1 303 -9 454 279 83 58 chr6 83768995 83769235 -105510319 + MIR SINE MIR 10 255 -7 377 349 83 5 chr6 83769974 83770192 -105509362 + MIR SINE MIR 18 252 -10 23 0 0 0 chr6 83770629 83770652 -105508902 + AT_rich Low_complexity Low_complexity 1 23 0 1749 196 0 0 chr6 83772268 83772574 -105506980 + AluJo SINE Alu 1 306 -6 556 217 98 0 chr6 83773342 83773356 -105506198 - MER69A DNA AcHobo -2351 175 164 567 61 0 0 chr6 83773356 83773438 -105506116 - L1PA2 LINE L1 -1 6154 6073 556 217 98 0 chr6 83773438 83773566 -105505988 - MER69A DNA AcHobo -2362 164 19 327 49 0 0 chr6 83774317 83774358 -105505196 + (CA)n Simple_repeat Simple_repeat 2 42 0 550 282 84 35 chr6 83774617 83774819 -105504735 - MIR SINE MIR -22 240 29 1792 152 0 42 chr6 83775306 83775616 -105503938 + AluJb SINE Alu 1 297 -15 944 230 41 45 chr6 83776158 83776449 -105503105 - L1MD2 LINE L1 -2 6357 6068 21 71 0 0 chr6 83776549 83776591 -105502963 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr6 83776700 83776724 -105502830 + AT_rich Low_complexity Low_complexity 1 24 0 391 289 15 44 chr6 83777188 83777323 -105502231 + L2 LINE L2 3179 3309 -4 1513 166 23 10 chr6 83777749 83778057 -105501497 - Tigger6 DNA MER2_type -13 1584 1273 255 61 0 0 chr6 83780404 83780437 -105499117 + (CA)n Simple_repeat Simple_repeat 2 34 0 270 0 0 0 chr6 83780444 83780474 -105499080 + (TG)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chr6 83780909 83780937 -105498617 + AT_rich Low_complexity Low_complexity 1 28 0 1424 179 0 0 chr6 83781600 83781834 -105497720 + AluSx SINE Alu 49 282 -30 1066 241 131 9 chr6 83782122 83782466 -105497088 + MER63B DNA MER1_type 3 388 -48 247 93 111 0 chr6 83782475 83782529 -105497025 - L1MB4 LINE L1 0 6180 6121 189 0 0 0 chr6 83782534 83782555 -105496999 + (TA)n Simple_repeat Simple_repeat 1 21 0 2292 109 22 27 chr6 83782558 83782925 -105496629 - L1MA4 LINE L1 -281 6019 5655 327 215 0 0 chr6 83782925 83782990 -105496564 + MER63B DNA MER1_type 371 435 0 2482 103 25 88 chr6 83785719 83786194 -105493360 + L1PB4 LINE L1 5468 5912 -244 2128 113 3 0 chr6 83786194 83786485 -105493069 - THE1C LTR MaLR 0 375 84 1378 121 0 0 chr6 83786798 83787004 -105492550 + L1PA8 LINE L1 5963 6168 -4 1946 134 17 0 chr6 83787739 83788029 -105491525 + AluSp SINE Alu 5 299 -14 40 0 0 0 chr6 83788054 83788094 -105491460 + AT_rich Low_complexity Low_complexity 1 40 0 560 300 85 20 chr6 83788262 83788509 -105491045 - MARNA DNA Mariner -62 524 262 1620 170 35 18 chr6 83788511 83788794 -105490760 - AluJo SINE Alu -24 288 1 180 338 75 0 chr6 83789179 83789259 -105490295 - MIR SINE MIR -67 141 56 2340 92 0 3 chr6 83789389 83789694 -105489860 + AluY SINE Alu 2 305 -6 222 200 18 18 chr6 83790248 83790303 -105489251 + (TA)n Simple_repeat Simple_repeat 2 56 0 316 327 176 13 chr6 83790785 83790944 -105488610 - L3 LINE CR1 -3 1574 1390 5408 133 9 60 chr6 83791962 83793123 -105486431 - L1PA15 LINE L1 -3 6162 5034 2312 55 7 3 chr6 83793123 83793416 -105486138 - AluY SINE Alu -17 294 1 5408 133 9 60 chr6 83793416 83793548 -105486006 - L1PA15 LINE L1 -1131 5034 4897 4926 76 45 10 chr6 83793743 83794451 -105485103 - L1PA6 LINE L1 -2 6152 5420 2050 230 8 4 chr6 83796133 83796628 -105482926 - L1PA15 LINE L1 -1771 4375 3879 1356 170 0 0 chr6 83798561 83798767 -105480787 - AluJo SINE Alu -106 206 1 2128 126 9 83 chr6 83798917 83799377 -105480177 + LTR37A LTR ERV1 1 426 0 1742 135 0 0 chr6 83801802 83802039 -105477515 - AluSq SINE Alu -76 237 1 262 195 0 44 chr6 83803262 83803375 -105476179 - AluY SINE Alu -193 108 1 24 53 0 0 chr6 83803670 83803708 -105475846 + AT_rich Low_complexity Low_complexity 1 38 0 681 226 63 0 chr6 83804172 83804331 -105475223 - MER3 DNA MER1_type 0 209 41 23 0 0 0 chr6 83804826 83804849 -105474705 + AT_rich Low_complexity Low_complexity 1 23 0 291 311 39 73 chr6 83805547 83805753 -105473801 + HAL1 LINE L1 639 837 -1670 669 203 62 0 chr6 83805754 83805882 -105473672 + AluJo SINE Alu 2 137 -175 2509 254 69 19 chr6 83805893 83806908 -105472646 + HAL1 LINE L1 1054 2119 -388 1445 155 72 11 chr6 83807910 83808174 -105471380 - AluJo SINE Alu -32 280 1 2353 92 0 0 chr6 83808414 83808709 -105470845 + AluSc SINE Alu 1 295 -14 399 219 14 130 chr6 83809128 83809274 -105470280 - MIR SINE MIR -25 237 109 488 211 72 46 chr6 83809700 83809852 -105469702 + L2 LINE L2 3158 3313 0 612 253 107 52 chr6 83810327 83810381 -105469173 - MIR SINE MIR -13 249 199 1215 159 23 0 chr6 83810381 83810595 -105468959 + MER20 DNA MER1_type 1 219 0 612 253 107 52 chr6 83810595 83810773 -105468781 - MIR SINE MIR -63 199 4 185 236 42 28 chr6 83811774 83811846 -105467708 - L3b LINE CR1 -197 1386 1314 227 230 60 50 chr6 83812053 83812073 -105467481 - L1MC/D LINE L1 -2035 5773 5755 2304 166 41 0 chr6 83812073 83812488 -105467066 + MSTB1 LTR MaLR 1 432 0 227 230 60 50 chr6 83812488 83812567 -105466987 - L1MC/D LINE L1 -2053 5755 5673 191 254 75 30 chr6 83812746 83812813 -105466741 - MIR SINE MIR -2 260 191 813 251 84 67 chr6 83813134 83813505 -105466049 + MLT1J1 LTR MaLR 69 445 -1 4081 234 63 26 chr6 83814170 83815687 -105463867 - L1M4 LINE L1 -2106 4040 2469 935 285 20 8 chr6 83817834 83818087 -105461467 - MIR SINE MIR -2 260 5 3551 217 27 50 chr6 83819185 83821266 -105458288 + L1MD2 LINE L1 4033 6077 -282 1430 99 0 0 chr6 83821266 83821457 -105458097 - AluY SINE Alu -3 308 118 15999 81 4 0 chr6 83821558 83823850 -105455704 + L1P LINE L1 596 2896 -3250 322 260 50 0 chr6 83823955 83824055 -105455499 - L1MC/D LINE L1 -515 5655 5551 2118 126 3 0 chr6 83824199 83824501 -105455053 + AluSx SINE Alu 2 304 -8 1990 131 0 28 chr6 83825415 83825740 -105453814 + AluSx SINE Alu 1 317 0 461 236 14 68 chr6 83826635 83826783 -105452771 - MLT1I LTR MaLR -269 140 1 233 241 0 121 chr6 83827253 83827336 -105452218 + MIR3 SINE MIR 101 173 -35 194 328 47 0 chr6 83828036 83828100 -105451454 - MIR SINE MIR -103 105 39 658 273 38 45 chr6 83828501 83828768 -105450786 - L2 LINE L2 0 3313 3049 211 271 0 0 chr6 83828779 83828827 -105450727 + (CAT)n Simple_repeat Simple_repeat 3 50 0 306 337 10 20 chr6 83829245 83829346 -105450208 - MIR3 SINE MIR -33 175 76 336 24 0 0 chr6 83830394 83830435 -105449119 + (TA)n Simple_repeat Simple_repeat 2 42 0 26 0 0 0 chr6 83832270 83832296 -105447258 + AT_rich Low_complexity Low_complexity 1 26 0 396 200 0 73 chr6 83832980 83833090 -105446464 + L1ME4a LINE L1 5542 5643 -478 401 242 73 0 chr6 83833197 83833362 -105446192 + L1ME4a LINE L1 5939 6115 -6 2203 153 38 0 chr6 83833678 83834051 -105445503 - MLT1B LTR MaLR 0 390 4 754 282 35 4 chr6 83835555 83835782 -105443772 - MIR SINE MIR -1 261 28 262 322 9 0 chr6 83836874 83836989 -105442565 - MLT1L LTR MaLR 0 615 500 337 246 64 0 chr6 83837216 83837326 -105442228 - MLT1L LTR MaLR -408 207 91 1856 140 116 6 chr6 83838842 83839171 -105440383 - MLT1A1 LTR MaLR 0 365 1 1539 225 131 20 chr6 83839625 83840113 -105439441 - MLT1F LTR MaLR 0 542 1 2254 99 0 0 chr6 83840434 83840719 -105438835 + AluSq SINE Alu 1 305 0 181 0 0 0 chr6 83840719 83840739 -105438815 + (TAAA)n Simple_repeat Simple_repeat 2 172 0 426 292 196 24 chr6 83840841 83841091 -105438463 + L3 LINE CR1 1279 1571 -6 21 0 0 0 chr6 83841851 83841872 -105437682 + AT_rich Low_complexity Low_complexity 1 21 0 1289 235 148 12 chr6 83842401 83842806 -105436748 - MLT1H LTR MaLR -16 533 74 402 241 222 71 chr6 83842979 83843191 -105436363 - MIR SINE MIR -17 245 2 956 164 144 85 chr6 83843538 83843892 -105435662 - THE1C LTR MaLR 0 375 1 2108 136 0 7 chr6 83844147 83844456 -105435098 + AluJb SINE Alu 3 309 -3 528 273 40 68 chr6 83844844 83845093 -105434461 + MIR SINE MIR 21 262 0 244 207 0 35 chr6 83845435 83845493 -105434061 + L2 LINE L2 3217 3272 0 215 365 0 0 chr6 83846955 83847040 -105432514 + (GGATG)n Simple_repeat Simple_repeat 3 87 0 1760 199 72 77 chr6 83847168 83847318 -105432236 + L1MC/D LINE L1 4978 5127 -1115 2068 110 14 3 chr6 83847318 83847610 -105431944 + AluSg SINE Alu 1 295 -15 1760 199 72 77 chr6 83847610 83848238 -105431316 + L1MC/D LINE L1 5127 5745 -497 220 82 103 10 chr6 83848247 83848344 -105431210 + (TA)n Simple_repeat Simple_repeat 2 107 0 2474 81 0 0 chr6 83849815 83850125 -105429429 - AluY SINE Alu -1 310 1 980 168 20 0 chr6 83850761 83850958 -105428596 - L1MD2 LINE L1 -1 6358 6158 405 0 0 0 chr6 83850966 83851011 -105428543 + (TG)n Simple_repeat Simple_repeat 2 46 0 2166 134 0 7 chr6 83852779 83853086 -105426468 + AluSx SINE Alu 1 305 -7 4049 202 23 51 chr6 83854129 83855144 -105424410 - L1PA13 LINE L1 -4724 2063 1078 2109 221 64 39 chr6 83855175 83855903 -105423651 + L1MD2 LINE L1 5570 6342 -17 364 153 24 12 chr6 83855936 83856021 -105423533 + CT-rich Low_complexity Low_complexity 3 88 0 31 68 0 0 chr6 83856029 83856088 -105423466 + GC_rich Low_complexity Low_complexity 1 59 0 1965 93 13 3 chr6 83856291 83856591 -105422963 + L1HS LINE L1 5853 6155 0 1319 187 28 1 chr6 83856609 83856918 -105422636 - L1PA16 LINE L1 0 6161 5816 516 250 83 24 chr6 83856930 83857098 -105422456 + MIR SINE MIR 74 251 -11 881 85 78 0 chr6 83857319 83857448 -105422106 - MER85 DNA T2_type 0 139 1 2564 106 7 21 chr6 83858947 83858999 -105420555 - L1PA16 LINE L1 -338 5828 5777 2253 107 0 3 chr6 83858999 83859297 -105420257 - AluSg SINE Alu -13 297 1 2564 106 7 21 chr6 83859297 83859670 -105419884 - L1PA16 LINE L1 -389 5777 5409 1355 201 13 38 chr6 83860007 83860321 -105419233 - AluJo SINE Alu -6 306 1 36815 77 8 12 chr6 83860402 83866562 -105412992 + L1PA6 LINE L1 11 6148 -6 402 345 79 0 chr6 83867114 83867279 -105412275 + L2 LINE L2 3098 3275 -38 955 234 13 68 chr6 83867290 83867598 -105411956 - L2 LINE L2 0 3313 3023 910 316 74 39 chr6 83868538 83869025 -105410529 + L2 LINE L2 2804 3307 -6 229 356 126 0 chr6 83869216 83869303 -105410251 + L2 LINE L2 3171 3268 -4 21 0 0 0 chr6 83869860 83869881 -105409673 + AT_rich Low_complexity Low_complexity 1 21 0 406 262 51 89 chr6 83869951 83870058 -105409496 + MIR SINE MIR 57 155 -107 2000 137 0 3 chr6 83870058 83870426 -105409128 + AluSx SINE Alu 1 367 0 406 262 51 89 chr6 83870426 83870531 -105409023 + MIR SINE MIR 155 262 0 23 0 0 0 chr6 83870993 83871016 -105408538 + AT_rich Low_complexity Low_complexity 1 23 0 1735 163 21 3 chr6 83872715 83872998 -105406556 - AluJo SINE Alu -23 289 2 851 216 54 15 chr6 83873688 83873892 -105405662 + MIR SINE MIR 21 232 -30 436 270 108 72 chr6 83873935 83874077 -105405477 + L1ME4a LINE L1 5804 5939 -182 2049 131 0 3 chr6 83874077 83874367 -105405187 - AluSq SINE Alu -24 289 1 436 270 108 72 chr6 83874367 83874474 -105405080 + L1ME4a LINE L1 5939 6068 -53 387 0 0 0 chr6 83874474 83874517 -105405037 + (TA)n Simple_repeat Simple_repeat 2 44 0 436 270 108 72 chr6 83874517 83874573 -105404981 + L1ME4a LINE L1 6068 6121 0 196 309 36 0 chr6 83874676 83874731 -105404823 - L2 LINE L2 -16 3256 3200 608 249 73 56 chr6 83874771 83875004 -105404550 + MIR SINE MIR 9 245 -17 260 338 54 1 chr6 83875035 83875147 -105404407 - MIR SINE MIR -60 148 31 189 345 0 0 chr6 83875702 83875757 -105403797 + L3 LINE CR1 1521 1575 -2 615 286 80 34 chr6 83875867 83876105 -105403449 - L2 LINE L2 0 3313 3065 2215 89 24 0 chr6 83876225 83876516 -105403038 - AluSx SINE Alu -14 298 1 1061 274 98 70 chr6 83876543 83877304 -105402250 - L2 LINE L2 -262 3051 2264 1456 156 94 0 chr6 83927584 83927840 -105351714 + AluSx SINE Alu 24 303 -9 2149 89 33 0 chr6 83928123 83928425 -105351129 - AluSx SINE Alu 0 312 1 2086 109 3 0 chr6 83928432 83928735 -105350819 - AluSg SINE Alu -6 304 1 2134 126 0 0 chr6 83928902 83929212 -105350342 - AluSx SINE Alu 0 312 3 500 305 88 19 chr6 83929223 83929485 -105350069 + Charlie2 DNA MER1_type 76 355 -2427 1961 171 60 8 chr6 83929489 83929869 -105349685 + L1MB3 LINE L1 5746 6145 -38 26 0 0 0 chr6 83929932 83929958 -105349596 + AT_rich Low_complexity Low_complexity 1 26 0 2264 118 11 38 chr6 83930122 83930487 -105349067 + THE1A LTR MaLR 1 355 0 2268 79 0 41 chr6 83930499 83930816 -105348738 - AluSq SINE Alu -8 305 2 272 250 0 0 chr6 83930894 83930946 -105348608 - MER112 DNA MER1_type -2 258 207 858 198 6 0 chr6 83931001 83931163 -105348391 - FRAM SINE Alu -14 162 1 1926 97 10 64 chr6 83931199 83931510 -105348044 - AluSx SINE Alu -16 296 3 499 208 10 10 chr6 83931516 83931617 -105347937 + MER104 DNA Tc2 7 107 -73 296 152 25 114 chr6 83931653 83931695 -105347859 - MER112 DNA MER1_type -181 79 46 942 190 6 6 chr6 83931695 83931858 -105347696 + FRAM SINE Alu 1 163 -3 296 152 25 114 chr6 83931858 83931894 -105347660 - MER112 DNA MER1_type -214 46 8 195 310 163 0 chr6 83931995 83932124 -105347430 - MIR3 SINE MIR -23 185 36 2469 53 0 0 chr6 83932207 83932509 -105347045 + AluY SINE Alu 1 302 -9 1287 90 0 0 chr6 83932870 83933036 -105346518 - AluSg/x SINE Alu -17 295 130 929 115 0 0 chr6 83933088 83933218 -105346336 - AluSp SINE Alu -181 132 3 308 287 85 11 chr6 83933322 83933416 -105346138 + MIR SINE MIR 51 151 -111 271 196 20 0 chr6 83933462 83933513 -105346041 - Alu SINE Alu -248 52 1 21 0 0 0 chr6 83933519 83933540 -105346014 + AT_rich Low_complexity Low_complexity 1 21 0 661 143 29 9 chr6 83933540 83933645 -105345909 - U6 snRNA snRNA 0 107 1 21 0 0 0 chr6 83933651 83933672 -105345882 + AT_rich Low_complexity Low_complexity 1 21 0 2196 103 3 3 chr6 83933677 83933987 -105345567 + AluSq SINE Alu 1 310 -3 2275 74 0 26 chr6 83934388 83934697 -105344857 + AluY SINE Alu 2 302 -9 761 254 0 0 chr6 83934754 83934919 -105344635 + FAM SINE Alu 1 165 -10 24 0 0 0 chr6 83934957 83934981 -105344573 + AT_rich Low_complexity Low_complexity 1 24 0 2193 74 7 0 chr6 83934986 83935271 -105344283 - AluSq SINE Alu -26 287 1 1888 74 4 0 chr6 83936094 83936380 -105343174 - AluY SINE Alu 0 311 53 2154 94 0 31 chr6 83936602 83936922 -105342632 + AluSg SINE Alu 1 310 0 1949 101 10 24 chr6 83936980 83937278 -105342276 + AluSx SINE Alu 3 296 -16 6933 55 50 0 chr6 83937429 83938283 -105341271 - MER11D LTR ERVK 0 897 1 1870 131 17 10 chr6 83938329 83938627 -105340927 + AluSx SINE Alu 1 300 -12 689 171 17 0 chr6 83938740 83938857 -105340697 + AluJo SINE Alu 120 238 -74 862 193 12 12 chr6 83939406 83939572 -105339982 + AluSg/x SINE Alu 120 285 -25 1190 153 132 36 chr6 83939572 83939604 -105339950 - Charlie1 DNA MER1_type -213 2548 2520 2150 106 20 0 chr6 83939604 83939907 -105339647 + AluSx SINE Alu 1 309 -3 1190 153 132 36 chr6 83939907 83939982 -105339572 - Charlie1 DNA MER1_type -241 2520 2454 628 166 0 119 chr6 83939982 83940133 -105339421 - FLAM_C SINE Alu 0 133 1 1190 153 132 36 chr6 83940133 83940489 -105339065 - Charlie1 DNA MER1_type -307 2454 1955 839 161 0 0 chr6 83940489 83940626 -105338928 - AluSg/x SINE Alu -8 302 166 410 249 76 5 chr6 83940639 83940852 -105338702 + L1ME3A LINE L1 5675 5945 -225 1974 132 0 40 chr6 83941112 83941438 -105338116 + AluSq SINE Alu 1 313 0 246 128 0 0 chr6 83941451 83941490 -105338064 + (A)n Simple_repeat Simple_repeat 1 39 0 2166 128 3 3 chr6 83941942 83942254 -105337300 + AluSx SINE Alu 1 312 0 1881 159 0 46 chr6 83942277 83942458 -105337096 - AluJb SINE Alu 0 312 151 2432 96 0 0 chr6 83942458 83942761 -105336793 - AluSg SINE Alu -7 303 1 1881 159 0 46 chr6 83942761 83942906 -105336648 - AluJb SINE Alu -161 151 1 916 148 0 21 chr6 83942923 83943065 -105336489 - AluJo SINE Alu -139 173 35 1752 146 66 7 chr6 83943096 83943384 -105336170 - AluSx SINE Alu -7 305 1 1513 218 115 30 chr6 83943570 83943599 -105335955 + L1M4 LINE L1 3085 3110 -3036 2164 122 3 3 chr6 83943599 83943895 -105335659 + AluSx SINE Alu 1 296 -16 1513 218 115 30 chr6 83943895 83944063 -105335491 + L1M4 LINE L1 3110 3262 -2884 1944 159 10 0 chr6 83944063 83944372 -105335182 + AluJb SINE Alu 1 312 0 1513 218 115 30 chr6 83944372 83944775 -105334779 + L1M4 LINE L1 3262 3737 -2409 612 239 22 8 chr6 83944777 83944911 -105334643 + AluJo SINE Alu 118 253 -59 274 139 0 0 chr6 83944914 83944957 -105334597 - FRAM/FAM SINE Alu -84 82 40 2242 115 3 0 chr6 83944983 83945279 -105334275 - AluSx SINE Alu -15 297 1 290 126 56 0 chr6 83945281 83945352 -105334202 + Alu SINE Alu 1 45 -256 600 259 68 81 chr6 83950101 83950495 -105329059 - MER89-int LTR ERV1 -2126 2521 2133 398 328 48 86 chr6 83950505 83951085 -105328469 - MER89-int LTR ERV1 -2776 4025 3468 2317 109 3 0 chr6 83951550 83951853 -105327701 - AluSq SINE Alu -9 304 1 202 200 0 67 chr6 83951874 83951934 -105327620 - L2 LINE L2 -757 2557 2502 2333 96 3 3 chr6 83952150 83952451 -105327103 + AluSx SINE Alu 1 301 -11 366 46 46 0 chr6 83952931 83952996 -105326558 + (TC)n Simple_repeat Simple_repeat 1 68 0 180 111 0 0 chr6 83953520 83953547 -105326007 + (A)n Simple_repeat Simple_repeat 1 27 0 700 122 52 26 chr6 83953755 83953870 -105325684 + FRAM SINE Alu 39 156 -20 882 216 0 0 chr6 83954328 83954490 -105325064 - FRAM SINE Alu -4 162 1 460 267 103 12 chr6 83954831 83954996 -105324558 + MLT1L LTR MaLR 142 321 -294 1927 101 61 11 chr6 83955425 83955702 -105323852 - AluSx SINE Alu -21 291 1 21 82 0 0 chr6 83956310 83956359 -105323195 + AT_rich Low_complexity Low_complexity 1 49 0 789 191 0 11 chr6 83956361 83956597 -105322957 - AluJb SINE Alu -1 311 3 1873 168 0 3 chr6 83956617 83956920 -105322634 - AluJb SINE Alu -10 302 1 896 222 56 52 chr6 83957021 83957104 -105322450 - MER58B DNA MER1_type -2087 333 252 1807 164 0 23 chr6 83957104 83957408 -105322146 + AluSx SINE Alu 1 297 -15 896 222 56 52 chr6 83957408 83957612 -105321942 - MER58B DNA MER1_type -2168 252 45 236 263 11 21 chr6 83957702 83957797 -105321757 + L1M4 LINE L1 4799 4892 -1254 2316 95 7 0 chr6 83957851 83958156 -105321398 + AluY SINE Alu 2 308 -3 1625 184 3 27 chr6 83958193 83958519 -105321035 + AluJo SINE Alu 1 312 0 29 28 0 0 chr6 83958533 83958569 -105320985 + AT_rich Low_complexity Low_complexity 1 36 0 2172 104 0 3 chr6 83958754 83959041 -105320513 + AluSx SINE Alu 1 286 -26 423 0 0 0 chr6 83959044 83959091 -105320463 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 328 249 109 36 chr6 83959093 83959286 -105320268 + L1MC4a LINE L1 5799 6005 -1803 2314 99 0 3 chr6 83959297 83959601 -105319953 + AluY SINE Alu 1 303 -8 2196 111 3 19 chr6 83959791 83960098 -105319456 - AluSx SINE Alu -10 302 1 2294 118 0 0 chr6 83960196 83960501 -105319053 + AluSx SINE Alu 1 305 -7 370 221 0 35 chr6 83960781 83960867 -105318687 - L2 LINE L2 0 3313 3231 1884 172 3 0 chr6 83961591 83961887 -105317667 + AluJo SINE Alu 5 301 -11 2230 80 22 0 chr6 83961976 83962273 -105317281 - AluSc SINE Alu 0 303 1 1149 197 20 128 chr6 83962402 83962550 -105317004 + AluYb8 SINE Alu 1 93 -215 2309 89 3 3 chr6 83962550 83962843 -105316711 + AluSx SINE Alu 2 294 -18 1149 197 20 128 chr6 83962843 83963039 -105316515 + AluYb8 SINE Alu 93 308 0 318 241 93 9 chr6 83963287 83963395 -105316159 + MIR SINE MIR 81 197 -65 1027 175 23 0 chr6 83963866 83964037 -105315517 - FAM SINE Alu 0 175 1 288 286 0 0 chr6 83964935 83965005 -105314549 + L2 LINE L2 3244 3313 0 375 267 135 50 chr6 83965207 83965525 -105314029 - L1ME LINE L1 -559 5603 5259 2160 115 30 0 chr6 83965737 83966033 -105313521 + AluSx SINE Alu 1 305 -7 1633 162 3 49 chr6 83966064 83966208 -105313346 + AluJb SINE Alu 1 125 -187 2434 84 0 0 chr6 83966208 83966504 -105313050 + AluSg SINE Alu 1 296 -14 1633 162 3 49 chr6 83966504 83966667 -105312887 + AluJb SINE Alu 125 294 -18 889 246 31 9 chr6 83966667 83966891 -105312663 + MIR SINE MIR 24 252 -10 249 33 0 0 chr6 83967616 83967646 -105311908 + (CGG)n Simple_repeat Simple_repeat 2 31 0 1867 160 0 0 chr6 83968476 83968757 -105310797 + AluJo SINE Alu 1 281 -31 1832 108 4 0 chr6 83969870 83970111 -105309443 + AluSx SINE Alu 64 305 -7 801 162 0 0 chr6 83970363 83970480 -105309074 + AluJo/FLAM SINE Alu 1 117 -195 307 136 15 98 chr6 83970480 83970567 -105308987 - Alu SINE Alu -7 295 242 260 216 0 40 chr6 83970849 83970923 -105308631 - MIR SINE MIR -3 259 189 2904 161 49 29 chr6 83971051 83971466 -105308088 + L1M3 LINE L1 4857 5262 -918 672 210 8 0 chr6 83971466 83971590 -105307964 + FLAM_A SINE Alu 1 125 -8 2904 161 49 29 chr6 83971590 83971756 -105307798 + L1M3 LINE L1 5262 5423 -757 2188 131 0 10 chr6 83971756 83972068 -105307486 + AluSx SINE Alu 1 309 -3 2904 161 49 29 chr6 83972068 83972399 -105307155 + L1M3 LINE L1 5423 5810 -370 1601 87 5 10 chr6 83972399 83972606 -105306948 - AluSp SINE Alu -17 296 91 3984 138 104 31 chr6 83972606 83973996 -105305558 - pTR5 LTR ERV1 0 2606 1524 652 118 0 0 chr6 83973996 83974089 -105305465 - AluSp SINE Alu -219 94 2 25 0 0 0 chr6 83974275 83974300 -105305254 + AT_rich Low_complexity Low_complexity 1 25 0 1753 169 0 28 chr6 83974324 83974635 -105304919 - AluJo SINE Alu 0 303 1 309 329 13 13 chr6 83974708 83974860 -105304694 - L1M4 LINE L1 -1254 4892 4741 634 178 0 0 chr6 83974947 83975054 -105304500 + AluSg/x SINE Alu 197 303 -6 446 245 19 0 chr6 83975057 83975163 -105304391 - MLT1C LTR MaLR -359 108 1 2394 82 0 16 chr6 83975234 83975549 -105304005 - AluSg SINE Alu 0 310 1 382 236 0 22 chr6 83975609 83975698 -105303856 - MER112 DNA MER1_type -6 254 168 2027 118 7 23 chr6 83975760 83976064 -105303490 - AluSg SINE Alu -9 301 3 2263 104 0 3 chr6 83976171 83976469 -105303085 + AluSx SINE Alu 1 297 -15 554 200 41 88 chr6 83976657 83976722 -105302832 - MER110 LTR ERV1 -20 471 404 1803 92 114 15 chr6 83976722 83976994 -105302560 - AluSg SINE Alu -11 299 1 554 200 41 88 chr6 83976994 83977053 -105302501 - MER110 LTR ERV1 -87 404 355 2052 120 3 27 chr6 83977053 83977354 -105302200 + AluSx SINE Alu 1 294 -18 554 200 41 88 chr6 83977354 83977398 -105302156 - MER110 LTR ERV1 -136 355 310 2534 83 0 0 chr6 83977406 83977718 -105301836 - AluSx SINE Alu 0 312 1 207 0 0 0 chr6 83977720 83977743 -105301811 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2297 92 0 0 chr6 83977743 83978027 -105301527 - AluSx SINE Alu -28 284 1 26 50 0 0 chr6 83978037 83978077 -105301477 + AT_rich Low_complexity Low_complexity 1 40 0 2390 77 0 10 chr6 83978094 83978394 -105301160 + AluY SINE Alu 1 297 -14 1447 203 53 4 chr6 83978396 83978677 -105300877 + AluJo SINE Alu 1 295 -17 417 175 135 16 chr6 83978732 83978858 -105300696 - Charlie1 DNA MER1_type -180 2581 2441 1709 118 123 26 chr6 83978986 83979326 -105300228 + THE1C LTR MaLR 3 375 0 2351 101 10 0 chr6 83979630 83979937 -105299617 + AluSp SINE Alu 1 310 -3 2204 86 3 17 chr6 83980470 83980762 -105298792 + AluSg SINE Alu 1 288 -22 2096 143 0 19 chr6 83980764 83981078 -105298476 + AluSx SINE Alu 1 308 -4 826 213 7 0 chr6 83981079 83981234 -105298320 + AluJb SINE Alu 135 290 -22 21 36 0 0 chr6 83981423 83981451 -105298103 + AT_rich Low_complexity Low_complexity 1 28 0 2168 108 10 0 chr6 83981746 83982034 -105297520 + AluSx SINE Alu 1 291 -21 1375 181 23 65 chr6 83982129 83982439 -105297115 + AluJo SINE Alu 1 297 -15 2047 91 39 52 chr6 83982570 83982877 -105296677 - AluSx SINE Alu -9 303 1 932 126 0 0 chr6 83982948 83983075 -105296479 - FLAM_C SINE Alu -7 136 10 1187 122 71 0 chr6 83983226 83983423 -105296131 + Tigger7 DNA MER2_type 2377 2587 0 1937 123 38 7 chr6 83983690 83983983 -105295571 + AluSx SINE Alu 6 307 -5 1794 154 27 10 chr6 83984136 83984435 -105295119 - AluJo SINE Alu -8 304 1 22 35 0 0 chr6 83984683 83984712 -105294842 + AT_rich Low_complexity Low_complexity 1 29 0 1743 162 13 29 chr6 83984714 83985022 -105294532 - AluJb SINE Alu -9 303 1 2266 110 3 10 chr6 83985070 83985379 -105294175 - AluSp SINE Alu -6 307 1 1041 118 0 0 chr6 83985486 83985621 -105293933 + AluSq/x SINE Alu 1 135 -178 2081 116 24 0 chr6 83985621 83985914 -105293640 + AluSx SINE Alu 1 300 -12 1978 101 86 7 chr6 83985918 83986196 -105293358 + AluSq SINE Alu 3 302 -11 2536 130 138 39 chr6 83986199 83986495 -105293059 - L1MC3 LINE L1 -31 7754 7489 2250 124 0 0 chr6 83986495 83986794 -105292760 + AluSx SINE Alu 1 299 -13 2536 130 138 39 chr6 83986794 83986899 -105292655 - L1MC3 LINE L1 -296 7489 7396 4612 111 25 15 chr6 83986899 83987583 -105291971 + LTR8 LTR ERV1 1 691 0 2536 130 138 39 chr6 83987583 83987673 -105291881 - L1MC3 LINE L1 -389 7396 7213 307 248 17 51 chr6 83987673 83987790 -105291764 - MLT1F1 LTR MaLR -420 147 35 433 116 128 0 chr6 83987790 83987876 -105291678 - L1MC3 LINE L1 -688 7097 7001 327 202 141 0 chr6 83987880 83987979 -105291575 - L1M4 LINE L1 -2913 3233 3121 529 136 50 136 chr6 83987984 83988124 -105291430 - AluJb SINE Alu -180 132 5 816 92 0 0 chr6 83988192 83988301 -105291253 - AluSx SINE Alu -4 305 197 * 1004 90 8 0 chr6 83988300 83988433 -105291121 - AluSx SINE Alu -177 135 2 1966 184 92 122 chr6 83988498 83989247 -105290307 + LTR8A LTR ERV1 1 727 0 2244 96 0 0 chr6 83989413 83989694 -105289860 - AluSq SINE Alu -22 291 11 2337 99 0 7 chr6 83989891 83990193 -105289361 - AluSx SINE Alu -12 300 1 1357 7 0 0 chr6 83990212 83990362 -105289192 - L1HS LINE L1 0 6155 6006 2142 139 0 3 chr6 83991159 83991460 -105288094 + AluSx SINE Alu 1 300 -12 1338 299 77 2 chr6 83991474 83991905 -105287649 + HERV16 LTR ERVL 1003 1465 -3531 3349 246 62 14 chr6 83991975 83992894 -105286660 + HERV16 LTR ERVL 1624 2586 -2410 2218 124 0 0 chr6 83992899 83993190 -105286364 + AluSx SINE Alu 1 291 -21 793 184 17 39 chr6 83993201 83993380 -105286174 + FAM SINE Alu 1 175 0 2088 138 0 0 chr6 83993611 83993923 -105285631 + AluSx SINE Alu 1 312 0 1817 141 17 3 chr6 83993941 83994239 -105285315 + AluSx SINE Alu 10 311 -1 1942 119 9 38 chr6 83994240 83994379 -105285175 + AluSc SINE Alu 1 142 -167 2741 13 0 0 chr6 83994379 83994689 -105284865 + AluYb8 SINE Alu 1 310 -8 1942 119 9 38 chr6 83994689 83994867 -105284687 + AluSc SINE Alu 142 309 0 689 204 0 8 chr6 83996054 83996186 -105283368 - FLAM_C SINE Alu -10 133 3 787 172 0 77 chr6 83996318 83996487 -105283067 + L1PB4 LINE L1 5994 6149 -7 291 133 33 33 chr6 83997999 83998059 -105281495 - L1MD1 LINE L1 -10 6232 6173 1149 168 45 0 chr6 83998059 83998261 -105281293 + AluSx SINE Alu 1 211 -101 2292 82 3 7 chr6 83998284 83998590 -105280964 + AluSx SINE Alu 1 305 -7 401 171 67 38 chr6 83998593 83998698 -105280856 + AluJo SINE Alu 31 138 -164 254 277 116 9 chr6 83998708 83998820 -105280734 + L2 LINE L2 3130 3253 -60 261 304 29 0 chr6 83998835 83998904 -105280650 + L2 LINE L2 3200 3270 -43 188 280 0 20 chr6 83998940 83998990 -105280564 + L2 LINE L2 3259 3307 -6 22 0 0 0 chr6 83999212 83999234 -105280320 + AT_rich Low_complexity Low_complexity 1 22 0 2737 132 9 21 chr6 83999251 83999445 -105280109 + MSTA LTR MaLR 1 196 -232 1525 182 7 3 chr6 83999445 83999736 -105279818 + AluJo SINE Alu 13 304 -8 2737 132 9 21 chr6 83999736 83999972 -105279582 + MSTA LTR MaLR 196 426 -2 781 121 17 9 chr6 83999982 84000098 -105279456 + FLAM_C SINE Alu 2 118 -25 2200 105 0 0 chr6 84000125 84000421 -105279133 + AluSx SINE Alu 1 296 -16 2248 90 0 0 chr6 84000421 84000721 -105278833 + AluSx SINE Alu 1 300 -12 1856 150 14 0 chr6 84000734 84001021 -105278533 + AluSx SINE Alu 1 291 -21 1945 136 3 0 chr6 84001465 84001752 -105277802 - AluSx SINE Alu -14 298 11 541 283 22 75 chr6 84001787 84002187 -105277367 - L1MC4a LINE L1 -1896 5912 5534 1159 136 146 0 chr6 84002525 84002731 -105276823 + AluSx SINE Alu 56 291 -21 2198 92 10 0 chr6 84002985 84003290 -105276264 - AluSx SINE Alu -4 308 1 807 153 0 0 chr6 84003313 84003437 -105276117 - FRAM SINE Alu -30 146 23 286 301 164 22 chr6 84004544 84004959 -105274595 + L2 LINE L2 2168 2641 -673 395 248 121 21 chr6 84005067 84005208 -105274346 + L2 LINE L2 3116 3270 -2 2460 27 10 13 chr6 84005493 84005793 -105273761 + AluY SINE Alu 1 299 -12 1637 141 27 27 chr6 84006185 84006483 -105273071 - AluJo SINE Alu -10 302 5 2083 129 3 6 chr6 84006566 84006877 -105272677 + AluSg SINE Alu 1 310 0 1333 163 14 5 chr6 84006897 84007118 -105272436 - Tigger3(Golem) DNA MER2_type -1 3028 2806 977 197 33 19 chr6 84007095 84007308 -105272246 - Tigger3(Golem) DNA MER2_type -2802 227 12 * 1165 161 32 44 chr6 84007308 84007353 -105272201 + L1MA8 LINE L1 5785 5829 -462 2141 110 0 0 chr6 84007353 84007652 -105271902 + AluSx SINE Alu 1 299 -13 1165 161 32 44 chr6 84007652 84007854 -105271700 + L1MA8 LINE L1 5829 6029 -262 * 2156 232 116 18 chr6 84007844 84008455 -105271099 + L1MC4a LINE L1 7015 7709 -99 2117 116 0 0 chr6 84008455 84008756 -105270798 + AluSx SINE Alu 1 301 -11 2156 232 116 18 chr6 84008756 84008867 -105270687 + L1MC4a LINE L1 7709 7808 0 811 105 0 9 chr6 84009041 84009155 -105270399 - FLAM_C SINE Alu -25 118 6 1915 138 0 14 chr6 84009514 84009805 -105269749 + AluSx SINE Alu 1 287 -25 24 0 0 0 chr6 84009805 84009829 -105269725 + AT_rich Low_complexity Low_complexity 1 24 0 484 309 97 5 chr6 84009929 84010130 -105269424 + MIR SINE MIR 20 244 -18 2167 91 3 0 chr6 84010228 84010515 -105269039 - AluSx SINE Alu -24 288 1 2000 82 0 11 chr6 84011283 84011550 -105268004 + AluSc SINE Alu 1 264 -45 2007 96 14 0 chr6 84011705 84011996 -105267558 + AluSg1 SINE Alu 1 295 -14 23 0 0 0 chr6 84011996 84012019 -105267535 + AT_rich Low_complexity Low_complexity 1 23 0 687 172 14 158 chr6 84012337 84012448 -105267106 - MER5A DNA MER1_type -3 186 61 2100 98 0 29 chr6 84012448 84012627 -105266927 - AluSx SINE Alu -4 308 140 2370 73 0 0 chr6 84012627 84012930 -105266624 - AluY SINE Alu -8 303 1 2100 98 0 29 chr6 84012930 84013066 -105266488 - AluSx SINE Alu -172 140 2 1611 113 67 14 chr6 84013066 84013349 -105266205 - AluJb SINE Alu -12 300 3 687 172 14 158 chr6 84013349 84013378 -105266176 - MER5A DNA MER1_type -127 62 81 1932 97 37 0 chr6 84013378 84013676 -105265878 - AluSx SINE Alu -2 310 2 687 172 14 158 chr6 84013676 84013742 -105265812 - MER5A DNA MER1_type -107 82 8 18342 44 3 0 chr6 84015064 84017338 -105262216 - L1PA5 LINE L1 -1805 4341 2061 8482 47 2 2 chr6 84017338 84019141 -105260413 + L1PA5 LINE L1 4348 6154 0 319 275 122 0 chr6 84020040 84020171 -105259383 + MIR SINE MIR 7 153 -109 1119 178 5 5 chr6 84020681 84020889 -105258665 + MER3 DNA MER1_type 1 208 -1 1651 145 0 74 chr6 84021129 84021454 -105258100 + AluJb SINE Alu 3 303 -9 269 260 236 8 chr6 84021516 84021643 -105257911 - MLT1I LTR MaLR -56 353 198 2258 172 39 93 chr6 84021814 84022275 -105257279 + L1MC3 LINE L1 5767 6113 -1672 2101 120 0 0 chr6 84022275 84022574 -105256980 + AluY SINE Alu 1 299 -12 2258 172 39 93 chr6 84022574 84022776 -105256778 + L1MC3 LINE L1 6113 6324 -1461 1570 131 67 82 chr6 84022788 84022923 -105256631 + MER44D DNA MER2_type 2 137 -2354 2075 128 48 31 chr6 84022923 84023281 -105256273 - THE1B LTR MaLR 0 364 1 1570 131 67 82 chr6 84023281 84023355 -105256199 + MER44D DNA MER2_type 137 211 -2280 1812 156 3 0 chr6 84023355 84023644 -105255910 + AluSx SINE Alu 1 290 -22 195 42 0 0 chr6 84023644 84023668 -105255886 + (GGAGA)n Simple_repeat Simple_repeat 5 28 0 1570 131 67 82 chr6 84023668 84023799 -105255755 + MER44D DNA MER2_type 209 609 0 938 137 0 53 chr6 84023799 84023989 -105255565 + L1MC3 LINE L1 6393 6572 -1213 1388 134 0 5 chr6 84023989 84024206 -105255348 + AluSg/x SINE Alu 96 311 -1 1794 155 57 114 chr6 84024206 84024242 -105255312 + L1MC3 LINE L1 6610 6646 -1139 1537 105 0 0 chr6 84024242 84024451 -105255103 - AluSq SINE Alu -14 299 91 1794 155 57 114 chr6 84024451 84024668 -105254886 + L1MC3 LINE L1 6646 6874 -911 1968 140 3 0 chr6 84024668 84024961 -105254593 + AluSx SINE Alu 1 294 -18 1794 155 57 114 chr6 84024961 84025033 -105254521 + L1MC3 LINE L1 6874 6949 -836 2293 80 3 0 chr6 84025033 84025333 -105254221 - AluSg SINE Alu -9 301 1 1794 155 57 114 chr6 84025333 84025514 -105254040 + L1MC3 LINE L1 6949 7089 -696 303 304 10 0 chr6 84025521 84025623 -105253931 + MLT1F1 LTR MaLR 35 137 -430 1051 129 31 62 chr6 84025625 84025748 -105253806 + L1MC3 LINE L1 7202 7318 -467 1654 152 17 40 chr6 84025748 84025892 -105253662 + AluSx SINE Alu 1 147 -165 2372 47 0 7 chr6 84025892 84026191 -105253363 + AluY SINE Alu 1 297 -14 1654 152 17 40 chr6 84026191 84026348 -105253206 + AluSx SINE Alu 147 295 -17 1051 129 31 62 chr6 84026348 84026418 -105253136 + L1MC3 LINE L1 7318 7389 -396 2410 83 0 0 chr6 84026418 84026731 -105252823 + AluSp SINE Alu 1 313 0 1934 113 0 0 chr6 84026840 84027105 -105252449 + AluSg SINE Alu 1 265 -45 308 198 77 22 chr6 84027119 84027210 -105252344 + L1MC3 LINE L1 7664 7759 -26 1275 154 0 75 chr6 84028239 84028492 -105251062 - AluJo SINE Alu -74 238 5 23 33 0 0 chr6 84028736 84028766 -105250788 + AT_rich Low_complexity Low_complexity 1 30 0 805 152 0 8 chr6 84028786 84028911 -105250643 + FLAM_C SINE Alu 1 124 -19 33 0 0 0 chr6 84028912 84028945 -105250609 + AT_rich Low_complexity Low_complexity 1 33 0 353 226 195 6 chr6 84028945 84029104 -105250450 + L1MC5 LINE L1 7743 7931 -30 27 0 0 0 chr6 84029104 84029131 -105250423 + AT_rich Low_complexity Low_complexity 1 27 0 2279 83 7 3 chr6 84029142 84029444 -105250110 + AluY SINE Alu 2 304 -7 2044 133 3 0 chr6 84029570 84029871 -105249683 + AluSx SINE Alu 3 304 -8 2232 93 10 0 chr6 84029969 84030271 -105249283 + AluSq SINE Alu 1 305 -8 2105 100 0 0 chr6 84030670 84030987 -105248567 + AluSg SINE Alu 1 317 0 2194 99 0 10 chr6 84031597 84031900 -105247654 + AluSq SINE Alu 1 300 -13 1014 158 0 0 chr6 84031900 84032065 -105247489 + AluSq SINE Alu 134 298 -15 2250 103 0 0 chr6 84032733 84033045 -105246509 + AluSx SINE Alu 1 312 0 713 232 21 32 chr6 84033919 84034109 -105245445 - AluJo SINE Alu -3 309 122 202 361 62 8 chr6 84034216 84034346 -105245208 + L2 LINE L2 2433 2569 -745 2048 118 0 35 chr6 84034613 84034748 -105244806 + AluSx SINE Alu 1 139 -173 2279 86 0 19 chr6 84034748 84035063 -105244491 + AluSc SINE Alu 1 309 0 2048 118 0 35 chr6 84035063 84035241 -105244313 + AluSx SINE Alu 139 303 -9 1814 148 16 29 chr6 84035667 84035978 -105243576 + AluSx SINE Alu 1 307 -5 816 243 0 0 chr6 84035978 84036151 -105243403 + AluJo/FRAM SINE Alu 134 306 -6 233 139 0 0 chr6 84036325 84036361 -105243193 - MER53 DNA DNA -1 188 153 390 21 0 0 chr6 84036464 84036511 -105243043 + (CA)n Simple_repeat Simple_repeat 2 48 0 230 306 71 0 chr6 84036545 84036705 -105242849 + L1M1 LINE L1 5272 5440 -711 226 190 0 35 chr6 84036707 84036765 -105242789 + L1M4 LINE L1 4697 4752 -1394 1312 109 0 0 chr6 84036776 84036959 -105242595 + AluSg/x SINE Alu 110 292 -18 264 30 0 0 chr6 84036959 84036992 -105242562 + (CA)n Simple_repeat Simple_repeat 2 34 0 1303 33 0 0 chr6 84037819 84037969 -105241585 - HERVK LTR ERVK -97 7146 6997 296 339 90 41 chr6 84038055 84038300 -105241254 + L1MC4 LINE L1 5501 5757 -2051 1793 154 7 3 chr6 84038328 84038620 -105240934 + AluSx SINE Alu 1 293 -19 1919 108 4 4 chr6 84038624 84038940 -105240614 + AluSg SINE Alu 3 318 0 2409 63 0 3 chr6 84038942 84039245 -105240309 + AluY SINE Alu 3 304 -7 1839 157 7 0 chr6 84039365 84039670 -105239884 + AluJb SINE Alu 1 307 -5 1661 148 27 27 chr6 84039745 84040043 -105239511 + AluJb SINE Alu 1 298 -14 1979 100 0 24 chr6 84040076 84040391 -105239163 + AluY SINE Alu 1 308 0 667 188 53 126 chr6 84040392 84040467 -105239087 + L1MC4 LINE L1 6272 6351 -1691 2374 50 0 7 chr6 84040467 84040767 -105238787 + AluY SINE Alu 1 298 -13 667 188 53 126 chr6 84040767 84040993 -105238561 + L1MC4 LINE L1 6351 8042 0 614 121 0 0 chr6 84041046 84041129 -105238425 + AluJ/FLAM SINE Alu 2 84 -228 1978 97 38 0 chr6 84041142 84041430 -105238124 + AluSg1 SINE Alu 2 300 -9 429 156 0 0 chr6 84041442 84041506 -105238048 - AluJ/FLAM SINE Alu -243 69 6 595 219 36 12 chr6 84041511 84041758 -105237796 + HAL1b LINE L1 945 1314 -34 203 0 37 0 chr6 84041895 84041922 -105237632 + (TG)n Simple_repeat Simple_repeat 2 29 0 1961 121 0 23 chr6 84042033 84042338 -105237216 + AluSq SINE Alu 1 298 -15 802 128 0 0 chr6 84042468 84042585 -105236969 - AluSp/q SINE Alu -15 298 182 797 209 31 21 chr6 84042571 84042762 -105236792 - AluSp SINE Alu -17 296 104 * 359 186 0 0 chr6 84042764 84042823 -105236731 - AluSg/x SINE Alu -35 267 209 751 227 5 5 chr6 84043574 84043781 -105235773 + AluYa5 SINE Alu 100 306 -5 1634 182 96 50 chr6 84043784 84044005 -105235549 + L1M4 LINE L1 3759 3968 -2178 1966 110 17 3 chr6 84044005 84044295 -105235259 - AluSg SINE Alu -16 294 1 1634 182 96 50 chr6 84044295 84044496 -105235058 + L1M4 LINE L1 3968 4158 -1988 2185 104 3 0 chr6 84044496 84044803 -105234751 - AluSp SINE Alu -5 308 1 1634 182 96 50 chr6 84044803 84045032 -105234522 + L1M4 LINE L1 4158 4540 -1606 417 227 61 87 chr6 84045031 84045093 -105234461 + L1M4 LINE L1 4943 5005 -1141 * 2274 81 0 28 chr6 84045093 84045413 -105234141 + AluSq SINE Alu 1 311 -2 417 227 61 87 chr6 84045413 84045508 -105234046 + L1M4 LINE L1 5005 5095 -1051 216 97 0 0 chr6 84045508 84045539 -105234015 + (TA)n Simple_repeat Simple_repeat 2 32 0 417 227 61 87 chr6 84045539 84045609 -105233945 + L1M4 LINE L1 5095 5165 -981 2088 117 0 16 chr6 84045638 84045954 -105233600 + AluSq SINE Alu 3 313 0 1150 105 0 6 chr6 84046017 84046179 -105233375 - AluSg/x SINE Alu -28 284 124 1707 140 3 29 chr6 84046278 84046586 -105232968 - AluSx SINE Alu -12 300 1 355 235 59 39 chr6 84047055 84047157 -105232397 + MIR SINE MIR 90 193 -69 2035 13 0 4 chr6 84048030 84048266 -105231288 + L1PA4 LINE L1 5919 6153 -2 1243 153 50 8 chr6 84048359 84048601 -105230953 + AluSx SINE Alu 53 304 -8 299 77 0 0 chr6 84048698 84048737 -105230817 - L1MC1 LINE L1 -8 6325 6287 971 184 66 5 chr6 84048742 84048938 -105230616 + MER2 DNA MER2_type 3 210 -135 1816 105 16 79 chr6 84048991 84049306 -105230248 - AluSq SINE Alu -13 300 6 242 154 0 19 chr6 84049313 84049365 -105230189 + A-rich Low_complexity Low_complexity 6 56 0 228 184 0 0 chr6 84050394 84050432 -105229122 - L1MC1 LINE L1 -186 6147 6110 * 372 194 14 0 chr6 84050427 84050499 -105229055 - L1 LINE L1 -2485 3661 3589 * 695 185 39 0 chr6 84050496 84050626 -105228928 + L1 LINE L1 3633 3767 -2379 2052 126 7 7 chr6 84050712 84051013 -105228541 - AluSq SINE Alu -12 301 1 2376 84 0 7 chr6 84051029 84051339 -105228215 - AluSc SINE Alu -1 308 1 805 148 0 15 chr6 84051344 84051479 -105228075 - AluSq/x SINE Alu -180 133 1 1384 156 102 33 chr6 84051525 84051800 -105227754 - AluJb SINE Alu -8 294 1 1243 174 134 0 chr6 84051968 84052243 -105227311 + AluJo SINE Alu 1 312 0 452 212 30 0 chr6 84052324 84052423 -105227131 - U13 snRNA snRNA -2 102 1 744 143 0 24 chr6 84052468 84052594 -105226960 + AluJb SINE Alu 1 123 -189 389 292 107 6 chr6 84052604 84052782 -105226772 - MER112 DNA MER1_type -53 207 12 749 96 22 73 chr6 84052784 84052920 -105226634 + FLAM_C SINE Alu 6 134 -9 2139 80 3 32 chr6 84053732 84054044 -105225510 + AluSx SINE Alu 1 303 -9 1670 123 56 14 chr6 84054363 84054648 -105224906 - AluSg SINE Alu 0 310 14 3398 169 121 15 chr6 84055010 84055835 -105223719 - L1MB1 LINE L1 0 6168 5263 1681 131 27 47 chr6 84056222 84056520 -105223034 - AluSx SINE Alu -20 292 1 2215 95 0 0 chr6 84056665 84056961 -105222593 - AluSx SINE Alu -16 296 1 2014 128 0 3 chr6 84057351 84057656 -105221898 - AluSx SINE Alu -8 304 1 24 0 0 0 chr6 84059014 84059038 -105220516 + AT_rich Low_complexity Low_complexity 1 24 0 1508 181 16 29 chr6 84059372 84059687 -105219867 - AluJb SINE Alu -1 311 1 21 0 0 0 chr6 84059806 84059827 -105219727 + AT_rich Low_complexity Low_complexity 1 21 0 2325 74 3 3 chr6 84059930 84060241 -105219313 + AluY SINE Alu 1 311 0 705 201 0 22 chr6 84060848 84060982 -105218572 - FLAM_C SINE Alu -2 131 1 1879 152 3 0 chr6 84060991 84061288 -105218266 - AluSx SINE Alu -14 298 1 834 112 0 0 chr6 84061501 84061617 -105217937 - AluSq/x SINE Alu -197 116 1 563 137 23 92 chr6 84061626 84061757 -105217797 + L1MA10 LINE L1 6210 6331 -3 2170 114 0 0 chr6 84061829 84062127 -105217427 + AluSx SINE Alu 1 298 -14 1110 117 12 0 chr6 84062127 84062290 -105217264 + AluSp SINE Alu 134 298 -15 207 0 0 0 chr6 84063350 84063373 -105216181 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1036 157 6 0 chr6 84063456 84063622 -105215932 - Tigger3(Golem) DNA MER2_type -30 2999 2833 228 211 0 58 chr6 84063618 84063670 -105215884 - Tigger3(Golem) DNA MER2_type -2980 49 1 * 578 241 101 6 chr6 84063673 84063831 -105215723 - MIR SINE MIR -18 244 72 2111 116 0 0 chr6 84063957 84064259 -105215295 + AluSx SINE Alu 1 302 -10 891 164 63 74 chr6 84064359 84064482 -105215072 - MER5A DNA MER1_type 0 189 66 1574 144 52 4 chr6 84064482 84064784 -105214770 - AluSx SINE Alu 0 315 1 891 164 63 74 chr6 84064784 84064848 -105214706 - MER5A DNA MER1_type -123 66 3 246 226 19 0 chr6 84064860 84064913 -105214641 + MIR SINE MIR 103 156 -106 1934 141 10 0 chr6 84065031 84065337 -105214217 + AluSx SINE Alu 1 309 -3 2149 104 13 0 chr6 84065337 84065692 -105213862 + AluSq SINE Alu 1 360 0 681 47 0 0 chr6 84065692 84065777 -105213777 + (GGGAA)n Simple_repeat Simple_repeat 5 89 0 1596 112 119 15 chr6 84066018 84066287 -105213267 - AluSg SINE Alu -13 297 1 1402 170 12 17 chr6 84066446 84066687 -105212867 + LTR32 LTR ERVL 232 471 0 365 230 211 20 chr6 84066918 84067122 -105212432 - L3 LINE CR1 -165 1412 1170 211 25 50 50 chr6 84067649 84067689 -105211865 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 1516 152 0 4 chr6 84067695 84067932 -105211622 - AluSx SINE Alu -76 236 1 1960 131 17 7 chr6 84068157 84068455 -105211099 + AluSx SINE Alu 5 305 -7 2134 75 3 10 chr6 84068470 84068762 -105210792 - AluSp SINE Alu -23 290 1 2059 136 3 0 chr6 84068876 84069184 -105210370 + AluSx SINE Alu 1 309 -3 31 0 0 0 chr6 84069271 84069302 -105210252 + AT_rich Low_complexity Low_complexity 1 31 0 2361 70 0 0 chr6 84069310 84069610 -105209944 - AluY SINE Alu -11 300 1 1634 160 3 20 chr6 84069635 84069941 -105209613 - AluJo SINE Alu 0 312 12 975 194 164 14 chr6 84070438 84070731 -105208823 + MER2 DNA MER2_type 1 337 -8 326 146 36 0 chr6 84070771 84070826 -105208728 - MER66A LTR ERV1 -139 339 283 2192 95 16 0 chr6 84071286 84071591 -105207963 - AluSg SINE Alu 0 310 1 2032 100 7 0 chr6 84072322 84072621 -105206933 + AluSx SINE Alu 5 305 -7 1529 173 15 52 chr6 84073304 84073628 -105205926 + AluSx SINE Alu 1 312 0 371 254 55 85 chr6 84073898 84074010 -105205544 + L1MC/D LINE L1 5578 5683 -2125 1900 130 10 0 chr6 84074010 84074302 -105205252 + AluSq SINE Alu 5 299 -14 371 254 55 85 chr6 84074302 84074390 -105205164 + L1MC/D LINE L1 5683 5772 -2036 827 191 32 0 chr6 84074547 84074704 -105204850 - AluJo/FRAM SINE Alu -17 295 134 1857 113 51 3 chr6 84074704 84074996 -105204558 - AluSg SINE Alu -4 306 1 803 176 63 59 chr6 84075418 84075640 -105203914 - MIR SINE MIR -32 230 8 300 286 63 8 chr6 84075680 84075806 -105203748 - L2 LINE L2 -78 3235 3103 253 199 58 12 chr6 84075807 84075927 -105203627 + Alu SINE Alu 1 35 -267 858 97 6 102 chr6 84075946 84076122 -105203432 + AluSp/q SINE Alu 155 313 0 32 26 0 0 chr6 84077730 84077769 -105201785 + GC_rich Low_complexity Low_complexity 1 39 0 366 80 0 0 chr6 84078543 84078593 -105200961 + (CA)n Simple_repeat Simple_repeat 1 50 0 612 203 127 28 chr6 84078601 84078813 -105200741 + L1MC4 LINE L1 7172 7404 -638 315 273 18 48 chr6 84078922 84079087 -105200467 + L1MC4 LINE L1 7700 7859 -183 2037 95 9 52 chr6 84079095 84079421 -105200133 - AluSx SINE Alu 0 312 1 1880 123 7 4 chr6 84079441 84079717 -105199837 - AluSg SINE Alu -33 277 1 752 173 89 11 chr6 84079894 84080073 -105199481 + MER33 DNA MER1_type 1 193 -131 1865 157 0 3 chr6 84080119 84080431 -105199123 + AluJb SINE Alu 1 311 -1 670 122 0 98 chr6 84080431 84080554 -105199000 - AluJo/FLAM SINE Alu -200 112 2 464 201 104 0 chr6 84080556 84080690 -105198864 + MER33 DNA MER1_type 216 363 0 297 216 137 0 chr6 84080705 84080807 -105198747 + MER33 DNA MER1_type 248 363 0 1556 96 48 0 chr6 84080887 84081117 -105198437 - AluSp SINE Alu -5 308 68 1550 188 7 0 chr6 84081502 84081831 -105197723 - AluJb SINE Alu 0 331 1 474 280 69 35 chr6 84082082 84082314 -105197240 + L1MC/D LINE L1 5534 5773 -2035 1862 118 3 80 chr6 84082332 84082670 -105196884 + AluSx SINE Alu 1 312 0 814 201 35 29 chr6 84082679 84082853 -105196701 + AluJo SINE Alu 109 283 -29 180 0 0 0 chr6 84082857 84082877 -105196677 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 355 185 143 0 chr6 84082879 84082998 -105196556 + HAL1 LINE L1 2041 2176 -331 329 144 4 4 chr6 84083097 84083160 -105196394 - Alu SINE Alu -254 47 1 2061 124 0 0 chr6 84083186 84083493 -105196061 - AluSg SINE Alu -1 309 3 2261 100 0 0 chr6 84083515 84083824 -105195730 - AluSx SINE Alu -3 309 1 2117 112 0 10 chr6 84083826 84084131 -105195423 - AluSg SINE Alu -8 302 1 965 148 0 0 chr6 84084131 84084300 -105195254 - L1P5 LINE L1 -665 5491 5323 1365 144 9 0 chr6 84084301 84084530 -105195024 - AluSg/x SINE Alu -10 302 72 28 0 0 0 chr6 84084753 84084781 -105194773 + AT_rich Low_complexity Low_complexity 1 28 0 1161 164 0 5 chr6 84084822 84085023 -105194531 - AluJb SINE Alu -25 287 88 242 167 292 0 chr6 84085023 84085071 -105194483 + FLAM SINE Alu 53 114 -19 233 160 0 20 chr6 84085086 84085136 -105194418 + GA-rich Low_complexity Low_complexity 2 50 0 803 182 0 23 chr6 84085175 84085351 -105194203 + FRAM SINE Alu 2 173 -3 506 167 21 10 chr6 84085445 84085541 -105194013 + FLAM_A SINE Alu 16 112 -30 180 111 0 0 chr6 84085604 84085631 -105193923 + (A)n Simple_repeat Simple_repeat 1 27 0 189 0 0 0 chr6 84088280 84088301 -105191253 + (T)n Simple_repeat Simple_repeat 1 21 0 1904 113 32 0 chr6 84088329 84088612 -105190942 - AluSx SINE Alu -20 292 1 1672 106 102 4 chr6 84089116 84089391 -105190163 - AluSg SINE Alu -8 302 1 406 80 0 0 chr6 84089626 84089676 -105189878 - MLT1B LTR MaLR -308 82 33 1777 117 62 0 chr6 84089784 84090057 -105189497 + AluSx SINE Alu 1 290 -22 2101 99 0 3 chr6 84090095 84090411 -105189143 + AluSg SINE Alu 1 315 0 2054 126 3 0 chr6 84090421 84090730 -105188824 + AluSx SINE Alu 1 310 -2 2271 59 10 13 chr6 84090742 84091046 -105188508 + AluY SINE Alu 1 303 -8 663 249 23 23 chr6 84091590 84091767 -105187787 + MER5A DNA MER1_type 10 186 -3 1623 148 6 80 chr6 84094217 84094528 -105185026 - AluJb SINE Alu -23 289 2 1959 132 0 42 chr6 84094744 84094890 -105184664 + AluSx SINE Alu 1 129 -183 2402 99 0 3 chr6 84094890 84095203 -105184351 + AluSp SINE Alu 1 312 -1 1959 132 0 42 chr6 84095203 84095367 -105184187 + AluSx SINE Alu 129 298 -14 805 194 31 19 chr6 84095385 84095545 -105184009 + FRAM SINE Alu 1 162 -14 219 139 0 0 chr6 84096316 84096352 -105183202 + (T)n Simple_repeat Simple_repeat 1 36 0 497 125 0 0 chr6 84096742 84096814 -105182740 - AluJo SINE Alu -6 306 235 862 169 127 6 chr6 84096814 84096980 -105182574 - AluJo SINE Alu -126 186 1 2044 121 7 0 chr6 84097006 84097312 -105182242 - AluSx SINE Alu 0 308 1 39 0 0 0 chr6 84097312 84097351 -105182203 + AT_rich Low_complexity Low_complexity 1 39 0 1754 139 33 0 chr6 84097351 84097624 -105181930 + AluJo SINE Alu 18 299 -13 324 183 61 37 chr6 84097625 84097707 -105181847 - ORSL DNA AcHobo -184 91 8 719 178 31 0 chr6 84098012 84098141 -105181413 - FLAM_C SINE Alu 0 133 1 2217 94 0 3 chr6 84098235 84098550 -105181004 - AluSq SINE Alu 0 314 1 1375 167 25 8 chr6 84098735 84098980 -105180574 + AluJo SINE Alu 11 259 -53 208 96 41 55 chr6 84098993 84099066 -105180488 + (TA)n Simple_repeat Simple_repeat 1 72 0 1350 133 67 48 chr6 84099095 84099215 -105180339 + LTR65 LTR ERV1 2 118 -551 2155 107 31 3 chr6 84099215 84099506 -105180048 - AluSx SINE Alu -13 299 1 1350 133 67 48 chr6 84099506 84099655 -105179899 + LTR65 LTR ERV1 118 276 -393 693 174 107 96 chr6 84099695 84099873 -105179681 + LTR65 LTR ERV1 264 443 -226 1126 100 47 0 chr6 84099886 84100063 -105179491 - AluSq SINE Alu 0 310 127 2281 89 0 0 chr6 84100067 84100368 -105179186 - AluSx SINE Alu 0 301 1 269 337 12 0 chr6 84100610 84100696 -105178858 + MER110-int LTR ERV1 1997 2083 -2564 21 36 0 0 chr6 84101053 84101081 -105178473 + AT_rich Low_complexity Low_complexity 1 28 0 1531 193 0 29 chr6 84101105 84101385 -105178169 - AluJo SINE Alu -32 280 9 1839 168 3 10 chr6 84101509 84101818 -105177736 - AluJb SINE Alu 0 312 6 249 122 204 0 chr6 84101846 84101895 -105177659 - Charlie1 DNA MER1_type 0 2761 2703 311 233 0 0 chr6 84101916 84101976 -105177578 + AluJ/FRAM SINE Alu 233 292 -10 2005 138 0 16 chr6 84101999 84102303 -105177251 + AluSx SINE Alu 1 299 -13 397 183 211 14 chr6 84102303 84102445 -105177109 - Charlie1 DNA MER1_type -50 2711 2542 2049 110 25 0 chr6 84102459 84102740 -105176814 - AluJb SINE Alu -24 288 1 2241 103 10 3 chr6 84102950 84103260 -105176294 + AluSx SINE Alu 1 312 0 1295 187 81 57 chr6 84103424 84103577 -105175977 - AluJb SINE Alu -22 290 142 2283 95 0 10 chr6 84103577 84103881 -105175673 - AluSq SINE Alu -12 301 1 1592 133 114 30 chr6 84103883 84104154 -105175400 - AluSq SINE Alu -19 294 1 1295 187 81 57 chr6 84104154 84104280 -105175274 - AluJb SINE Alu -170 142 1 324 182 34 71 chr6 84104682 84104840 -105174714 + MER3 DNA MER1_type 5 205 -4 2332 85 14 0 chr6 84105787 84106082 -105173472 - AluSp SINE Alu -13 300 2 379 308 25 0 chr6 84106338 84106458 -105173096 + L1MB2 LINE L1 5479 5601 -520 2293 102 0 3 chr6 84106886 84107180 -105172374 - AluSq SINE Alu -20 293 1 2256 102 10 0 chr6 84107914 84108207 -105171347 + AluSq SINE Alu 1 296 -17 2221 114 3 0 chr6 84108312 84108618 -105170936 - AluSq SINE Alu -6 307 1 2179 126 3 0 chr6 84109511 84109812 -105169742 + AluSq SINE Alu 1 302 -11 28 29 0 0 chr6 84109841 84109876 -105169678 + AT_rich Low_complexity Low_complexity 1 35 0 2002 135 17 0 chr6 84109937 84110226 -105169328 - AluSx SINE Alu -18 294 1 1932 141 0 14 chr6 84110353 84110644 -105168910 - AluJb SINE Alu -13 299 13 2377 61 37 0 chr6 84110667 84110962 -105168592 + AluY SINE Alu 1 306 -5 2269 121 0 3 chr6 84111078 84111391 -105168163 - AluSx SINE Alu 0 312 1 2154 115 0 0 chr6 84111471 84111759 -105167795 - AluSq SINE Alu -25 288 1 180 0 0 0 chr6 84112262 84112282 -105167272 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 183 42 0 0 chr6 84112281 84112305 -105167249 + (TG)n Simple_repeat Simple_repeat 2 25 0 606 119 0 0 chr6 84112305 84112389 -105167165 - AluSg/x SINE Alu -34 278 195 580 172 0 16 chr6 84112400 84112528 -105167026 + (TG)n Simple_repeat Simple_repeat 2 127 0 1977 120 11 0 chr6 84112528 84112802 -105166752 - AluSx SINE Alu -34 278 2 453 120 0 13 chr6 84113120 84113195 -105166359 + AluSc SINE Alu 229 302 -7 2264 88 0 3 chr6 84114791 84115102 -105164452 + AluY SINE Alu 1 310 0 1779 162 160 34 chr6 84116166 84116530 -105163024 + L1MB2 LINE L1 5635 6074 -97 1913 136 18 7 chr6 84116530 84116809 -105162745 + AluSx SINE Alu 1 282 -30 1779 162 160 34 chr6 84116809 84116919 -105162635 + L1MB2 LINE L1 6074 6169 -2 1199 120 24 0 chr6 84117922 84118089 -105161465 + AluSc SINE Alu 2 172 -137 2241 128 0 0 chr6 84118383 84118680 -105160874 + AluSx SINE Alu 1 297 -15 744 163 98 126 chr6 84118735 84118905 -105160649 + MER51D LTR ERV1 449 613 -44 2018 128 14 0 chr6 84118905 84119201 -105160353 + AluSx SINE Alu 1 300 -12 744 163 98 126 chr6 84119201 84119245 -105160309 + MER51D LTR ERV1 613 657 0 1170 115 0 6 chr6 84119346 84119503 -105160051 - AluSq SINE Alu -21 292 137 2210 99 3 0 chr6 84119586 84119879 -105159675 + AluSp SINE Alu 1 294 -19 279 261 0 0 chr6 84119883 84119948 -105159606 - HAL1 LINE L1 0 2507 2443 2306 97 3 3 chr6 84120370 84120669 -105158885 + AluSg SINE Alu 1 299 -11 47 0 0 17 chr6 84120676 84120712 -105158842 + AT_rich Low_complexity Low_complexity 1 37 -20 2142 100 7 3 chr6 84120712 84121002 -105158552 - AluSp SINE Alu -22 291 1 47 0 0 17 chr6 84121002 84121023 -105158531 + AT_rich Low_complexity Low_complexity 37 57 0 406 193 259 12 chr6 84121162 84121328 -105158226 - HAL1 LINE L1 -69 2438 2232 1507 227 109 31 chr6 84121456 84121879 -105157675 + MER77 LTR ERV1 143 598 -7 2078 207 86 40 chr6 84121968 84122471 -105157083 + MLT1E LTR MaLR 53 578 -15 2327 95 3 7 chr6 84122582 84122886 -105156668 - AluSg SINE Alu -5 305 3 470 228 79 66 chr6 84122915 84123052 -105156502 - HAL1 LINE L1 -330 2177 2034 2112 112 14 10 chr6 84123052 84123347 -105156207 + AluSx SINE Alu 1 296 -16 470 228 79 66 chr6 84123347 84123450 -105156104 - HAL1 LINE L1 -473 2034 1934 271 294 67 0 chr6 84123577 84123757 -105155797 + L1M4 LINE L1 5151 5342 -804 2473 77 0 0 chr6 84123925 84124223 -105155331 + AluY SINE Alu 1 298 -13 22 0 0 0 chr6 84124586 84124608 -105154946 + AT_rich Low_complexity Low_complexity 1 22 0 2234 123 3 0 chr6 84124617 84124925 -105154629 - AluSx SINE Alu -3 309 1 2228 109 3 3 chr6 84125464 84125776 -105153778 + AluSq SINE Alu 1 312 -1 2297 82 4 0 chr6 84125776 84126147 -105153407 + AluSg SINE Alu 1 373 0 615 121 0 22 chr6 84126295 84126386 -105153168 - AluSg/x SINE Alu -16 293 205 25 31 0 0 chr6 84126451 84126483 -105153071 + AT_rich Low_complexity Low_complexity 1 32 0 2410 97 3 0 chr6 84126613 84126922 -105152632 - AluSx SINE Alu -2 310 1 2102 117 0 3 chr6 84127051 84127377 -105152177 - AluSx SINE Alu 0 325 1 643 174 0 38 chr6 84127467 84127599 -105151955 + AluJ SINE Alu 5 131 -171 1319 166 5 0 chr6 84127599 84127804 -105151750 - AluJb SINE Alu -22 290 85 1166 153 0 0 chr6 84127848 84128011 -105151543 + AluJ SINE Alu 131 293 -19 231 173 39 19 chr6 84128354 84128406 -105151148 + (CAGCC)n Simple_repeat Simple_repeat 4 56 0 2302 101 3 13 chr6 84128681 84128997 -105150557 + AluSp SINE Alu 1 313 0 2418 68 0 10 chr6 84129323 84129617 -105149937 + AluY SINE Alu 3 293 -18 1003 266 82 39 chr6 84129728 84130129 -105149425 + L1MC4a LINE L1 3839 4272 -1874 1650 105 71 115 chr6 84130129 84130452 -105149102 + AluSg SINE Alu 2 310 0 1003 266 82 39 chr6 84130452 84130596 -105148958 + L1MC4a LINE L1 4272 4408 -1738 2115 145 0 0 chr6 84130599 84130910 -105148644 + AluSx SINE Alu 1 311 -1 949 183 22 131 chr6 84130934 84130968 -105148586 + L1MC5 LINE L1 7329 7365 -596 2180 112 3 3 chr6 84130968 84131281 -105148273 + AluSq SINE Alu 1 313 0 949 183 22 131 chr6 84131281 84131613 -105147941 + L1MC5 LINE L1 7365 7655 -306 1445 201 45 3 chr6 84131615 84131903 -105147651 - AluJb SINE Alu -12 300 1 2372 94 3 0 chr6 84131933 84132240 -105147314 - AluSx SINE Alu -4 308 1 1706 181 17 11 chr6 84132248 84132535 -105147019 - AluJb SINE Alu -23 289 1 2253 95 0 0 chr6 84132581 84132885 -105146669 + AluSx SINE Alu 1 304 0 984 246 96 38 chr6 84132890 84133043 -105146511 + L1MC4a LINE L1 4399 4542 -1604 1150 170 39 164 chr6 84133043 84133264 -105146290 - AluJo SINE Alu -8 294 128 2476 80 0 7 chr6 84133264 84133566 -105145988 - AluSc SINE Alu -9 300 1 1150 170 39 164 chr6 84133566 84133680 -105145874 - AluJo SINE Alu -174 128 1 984 246 96 38 chr6 84133680 84133944 -105145610 + L1MC4a LINE L1 4542 4840 -1306 363 229 0 0 chr6 84133947 84134008 -105145546 - MER2 DNA MER2_type 0 345 285 428 230 0 0 chr6 84134032 84134106 -105145448 - MER2 DNA MER2_type -247 98 25 2084 160 62 28 chr6 84134137 84134436 -105145118 + L1MC3 LINE L1 7287 7605 -180 1942 134 14 7 chr6 84134436 84134726 -105144828 - AluSx SINE Alu -19 293 2 2084 160 62 28 chr6 84134726 84134826 -105144728 + L1MC3 LINE L1 7605 7700 -85 566 202 39 0 chr6 84134828 84134932 -105144622 + FLAM_A SINE Alu 8 115 -27 681 81 20 10 chr6 84134956 84135055 -105144499 + L1MC3 LINE L1 7684 7783 -2 587 190 71 118 chr6 84135052 84135263 -105144291 + L1MC4a LINE L1 5420 5620 -2188 * 26 50 0 0 chr6 84135384 84135424 -105144130 + AT_rich Low_complexity Low_complexity 1 40 0 860 140 0 37 chr6 84135438 84135574 -105143980 + FLAM_C SINE Alu 3 133 0 443 128 0 90 chr6 84135811 84135889 -105143665 + FRAM/FAM SINE Alu 9 79 -106 392 146 12 98 chr6 84135910 84135992 -105143562 - FLAM_A SINE Alu -55 78 4 655 141 47 0 chr6 84135995 84136123 -105143431 - L1MC3 LINE L1 -95 7690 7557 375 167 69 14 chr6 84136128 84136272 -105143282 + (TA)n Simple_repeat Simple_repeat 2 153 0 1941 130 7 3 chr6 84136303 84136587 -105142967 - AluJb SINE Alu -15 297 13 2143 112 0 3 chr6 84136646 84136962 -105142592 + AluSx SINE Alu 1 315 0 316 300 33 17 chr6 84137011 84137131 -105142423 + L1MC4a LINE L1 6057 6178 -1630 945 137 0 77 chr6 84137212 84137380 -105142174 - FRAM SINE Alu -11 155 1 32 53 0 27 chr6 84137523 84137570 -105141984 + AT_rich Low_complexity Low_complexity 1 47 -26 2106 131 23 3 chr6 84137570 84137876 -105141678 + AluSx SINE Alu 1 312 0 32 53 0 27 chr6 84137876 84137903 -105141651 + AT_rich Low_complexity Low_complexity 47 73 0 2303 96 3 3 chr6 84138193 84138494 -105141060 + AluSc SINE Alu 1 301 -8 1858 95 0 4 chr6 84139047 84139290 -105140264 + AluSq SINE Alu 72 313 0 303 268 45 18 chr6 84139618 84139730 -105139824 - MIR SINE MIR -125 137 23 2462 96 0 0 chr6 84140398 84140710 -105138844 + AluSx SINE Alu 1 312 0 1236 119 0 42 chr6 84140819 84141039 -105138515 - AluSq SINE Alu 0 340 129 2121 129 0 14 chr6 84141657 84141951 -105137603 - AluSx SINE Alu -22 290 1 185 309 123 14 chr6 84141952 84142172 -105137382 + L2 LINE L2 1521 1764 -1550 1693 128 0 76 chr6 84142183 84142367 -105137187 - AluJo SINE Alu -16 296 140 2269 120 7 0 chr6 84142367 84142675 -105136879 - AluSg SINE Alu 0 310 1 1693 128 0 76 chr6 84142675 84142780 -105136774 - AluJo SINE Alu -172 140 29 2440 73 0 3 chr6 84143014 84143317 -105136237 - AluSg1 SINE Alu -7 302 1 1072 275 98 55 chr6 84143623 84143777 -105135777 - L2 LINE L2 -377 2937 2791 2377 86 0 0 chr6 84143777 84144067 -105135487 - AluSg SINE Alu -20 290 1 264 30 0 0 chr6 84144071 84144104 -105135450 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 2224 106 0 0 chr6 84144104 84144387 -105135167 - AluSp SINE Alu -29 284 2 1072 275 98 55 chr6 84144387 84144969 -105134585 - L2 LINE L2 -524 2790 2163 25 75 0 0 chr6 84144982 84145035 -105134519 + AT_rich Low_complexity Low_complexity 1 53 0 * 184 342 60 17 chr6 84145021 84145138 -105134416 - L2 LINE L2 -2 3270 3149 2369 96 0 3 chr6 84145826 84146127 -105133427 + AluSx SINE Alu 1 300 -12 384 235 18 60 chr6 84146127 84146228 -105133326 - L1 LINE L1 -1164 4982 4887 2236 100 0 3 chr6 84146228 84146518 -105133036 + AluSc SINE Alu 1 289 -20 384 235 18 60 chr6 84146518 84146546 -105133008 - L1 LINE L1 -1259 4887 4859 235 174 116 35 chr6 84146521 84146607 -105132947 - L1 LINE L1 -1492 4654 4562 * 228 280 72 32 chr6 84146838 84146963 -105132591 - L1ME LINE L1 -263 5907 5778 2164 98 0 17 chr6 84146964 84147291 -105132263 + AluSp SINE Alu 1 322 0 859 178 117 25 chr6 84147461 84147624 -105131930 - AluJo SINE Alu -133 179 2 2256 122 3 0 chr6 84147662 84147973 -105131581 + AluSx SINE Alu 1 312 0 2265 78 3 0 chr6 84148049 84148331 -105131223 + AluY SINE Alu 1 283 -28 297 0 0 0 chr6 84148331 84148364 -105131190 + (CA)n Simple_repeat Simple_repeat 2 34 0 2136 113 10 3 chr6 84148568 84148879 -105130675 + AluSq SINE Alu 1 313 0 372 156 33 0 chr6 84148894 84148984 -105130570 + GA-rich Low_complexity Low_complexity 2 94 0 2431 80 6 0 chr6 84148989 84149300 -105130254 + AluSp SINE Alu 1 313 0 2538 54 0 6 chr6 84149561 84149874 -105129680 + AluY SINE Alu 1 311 0 2260 67 21 3 chr6 84151667 84151952 -105127602 - AluY SINE Alu -21 290 1 208 302 163 0 chr6 84152034 84152163 -105127391 + MIR3 SINE MIR 36 185 -23 307 152 25 114 chr6 84152264 84152300 -105127254 + MER112 DNA MER1_type 8 35 -225 1008 209 0 0 chr6 84152300 84152463 -105127091 - FRAM SINE Alu -3 163 1 307 152 25 114 chr6 84152463 84152505 -105127049 + MER112 DNA MER1_type 35 79 -181 514 208 10 10 chr6 84152541 84152642 -105126912 - MER104 DNA Tc2 -73 107 7 2172 90 3 40 chr6 84152646 84152947 -105126607 + AluSq SINE Alu 1 290 -23 2824 137 10 57 chr6 84152963 84152975 -105126579 - L1MB3 LINE L1 -11 6172 6161 2506 109 5 41 chr6 84152975 84153343 -105126211 - THE1A LTR MaLR 0 355 1 2824 137 10 57 chr6 84153343 84153370 -105126184 - L1MB3 LINE L1 -22 6161 6134 2187 108 3 7 chr6 84153370 84153675 -105125879 + AluSc SINE Alu 1 304 -5 2824 137 10 57 chr6 84153675 84153796 -105125758 - L1MB3 LINE L1 -49 6134 6009 2163 130 10 0 chr6 84153796 84154103 -105125451 + AluSg SINE Alu 1 310 0 2824 137 10 57 chr6 84154103 84154453 -105125101 - L1MB3 LINE L1 -174 6009 5684 1921 137 7 30 chr6 84154453 84154752 -105124802 - AluSx SINE Alu -18 294 3 1854 120 28 7 chr6 84154754 84155037 -105124517 - AluJb SINE Alu -23 289 1 1618 164 17 17 chr6 84155214 84155506 -105124048 + AluJb SINE Alu 1 292 -20 1983 150 0 13 chr6 84156232 84156532 -105123022 + AluJo SINE Alu 1 296 -16 2352 99 0 0 chr6 84156732 84157026 -105122528 - AluSc SINE Alu -13 296 3 2265 106 7 0 chr6 84157181 84157483 -105122071 - AluSx SINE Alu -8 304 1 421 236 9 38 chr6 84159226 84159332 -105120222 - MIR SINE MIR -95 167 65 1182 206 0 9 chr6 84159421 84159639 -105119915 + AluJb SINE Alu 79 294 -18 705 221 104 59 chr6 84159706 84159928 -105119626 - MER46C DNA MER2_type -103 235 4 847 101 0 107 chr6 84159937 84160086 -105119468 + MER3 DNA MER1_type 1 133 -76 1138 157 0 11 chr6 84160089 84160267 -105119287 - FRAM SINE Alu 0 40 1 327 148 98 0 chr6 84160268 84160329 -105119225 + MER3 DNA MER1_type 140 206 -3 556 175 25 94 chr6 84160518 84160616 -105118938 - MER104 DNA Tc2 -1749 149 65 2284 92 0 14 chr6 84160616 84160911 -105118643 + AluSc SINE Alu 1 291 -18 556 175 25 94 chr6 84160911 84160972 -105118582 - MER104 DNA Tc2 -1833 65 1 2047 134 7 0 chr6 84161418 84161710 -105117844 - AluSg SINE Alu -16 294 1 2209 39 16 8 chr6 84161745 84162001 -105117553 + L1PA3 LINE L1 5898 6155 0 632 242 119 26 chr6 84162432 84162626 -105116928 + MIR SINE MIR 2 213 -49 2079 117 0 39 chr6 84163397 84163705 -105115849 + AluSx SINE Alu 1 296 -16 2367 93 3 3 chr6 84163705 84164017 -105115537 + AluSx SINE Alu 1 312 0 2171 93 7 7 chr6 84164369 84164669 -105114885 + AluSq SINE Alu 1 300 -13 225 0 0 0 chr6 84164670 84164695 -105114859 + (CA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr6 84164695 84164720 -105114834 + AT_rich Low_complexity Low_complexity 1 25 0 433 209 189 85 chr6 84164748 84164827 -105114727 - MER5A DNA MER1_type -18 171 102 1583 191 16 16 chr6 84164827 84165136 -105114418 - AluJb SINE Alu -3 309 1 433 209 189 85 chr6 84165136 84165209 -105114345 - MER5A DNA MER1_type -87 102 3 2034 101 49 10 chr6 84165541 84165829 -105113725 - AluSg SINE Alu -11 299 1 558 149 234 0 chr6 84166253 84166360 -105113194 - FLAM_C SINE Alu 0 133 2 3255 163 26 74 chr6 84166932 84167140 -105112414 + L1MB2 LINE L1 4615 4831 -1340 7697 46 2 10 chr6 84167140 84168382 -105111172 + L1PA5 LINE L1 4921 6154 0 3255 163 26 74 chr6 84168382 84168722 -105110832 + L1MB2 LINE L1 4831 5186 -985 1694 168 7 31 chr6 84168722 84169037 -105110517 - AluSx SINE Alu 0 308 1 3255 163 26 74 chr6 84169037 84169193 -105110361 + L1MB2 LINE L1 5186 5348 -823 1673 186 10 3 chr6 84169193 84169484 -105110070 + AluJo SINE Alu 1 293 -19 3255 163 26 74 chr6 84169484 84169787 -105109767 + L1MB2 LINE L1 5348 5664 -507 2123 108 38 19 chr6 84169787 84170101 -105109453 + 7SLRNA srpRNA srpRNA 1 320 0 3255 163 26 74 chr6 84170101 84170184 -105109370 + L1MB2 LINE L1 5664 5749 -422 1765 130 60 3 chr6 84170184 84170468 -105109086 + AluSg SINE Alu 1 300 -10 3255 163 26 74 chr6 84170468 84170693 -105108861 + L1MB2 LINE L1 5749 5868 -303 783 234 0 0 chr6 84170709 84170854 -105108700 - AluJb SINE Alu -30 282 138 1534 110 62 15 chr6 84170857 84170914 -105108640 + L1MB2 LINE L1 5859 5912 -259 2084 111 7 7 chr6 84170914 84171211 -105108343 - AluSq SINE Alu -16 297 1 1534 110 62 15 chr6 84171211 84171426 -105108128 + L1MB2 LINE L1 5912 6144 -27 456 189 0 0 chr6 84171434 84171508 -105108046 + AluJ/FLAM SINE Alu 11 84 -228 204 40 0 0 chr6 84171707 84171732 -105107822 + (TG)n Simple_repeat Simple_repeat 2 26 0 2271 113 0 10 chr6 84171926 84172237 -105107317 + AluY SINE Alu 1 308 -3 1892 152 31 0 chr6 84172603 84172893 -105106661 - AluSx SINE Alu -13 299 1 1505 77 14 5 chr6 84173060 84173268 -105106286 + AluY SINE Alu 102 311 0 819 168 0 0 chr6 84173652 84173777 -105105777 - FLAM_C SINE Alu -18 125 1 1648 196 3 7 chr6 84174268 84174564 -105104990 - AluJo SINE Alu -17 295 1 28 61 0 0 chr6 84174654 84174703 -105104851 + AT_rich Low_complexity Low_complexity 1 49 0 1840 130 81 3 chr6 84174795 84175079 -105104475 + AluSx SINE Alu 1 306 -6 2121 106 6 56 chr6 84175853 84176174 -105103380 - AluSx SINE Alu -7 305 1 642 107 36 0 chr6 84176361 84176445 -105103109 + AluSq SINE Alu 2 88 -225 2165 115 10 0 chr6 84176447 84176742 -105102812 + AluSp SINE Alu 5 302 -11 1516 120 0 18 chr6 84176742 84176981 -105102573 + AluSq SINE Alu 73 309 0 893 140 0 14 chr6 84176992 84177135 -105102419 + FLAM_C SINE Alu 1 141 -2 2284 103 3 0 chr6 84177201 84177502 -105102052 + AluSq SINE Alu 2 303 -10 1963 128 13 20 chr6 84177502 84177805 -105101749 + AluSx SINE Alu 1 302 -10 2017 127 28 0 chr6 84177872 84178156 -105101398 + AluSg SINE Alu 1 292 -18 1852 174 7 3 chr6 84178169 84178468 -105101086 + AluJb SINE Alu 1 300 -12 360 88 0 0 chr6 84178921 84178978 -105100576 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2084 92 7 14 chr6 84178978 84179262 -105100292 - AluSx SINE Alu -30 282 1 1668 176 22 9 chr6 84179379 84179698 -105099856 - L1MA9 LINE L1 0 6312 5990 28 0 0 0 chr6 84179834 84179862 -105099692 + AT_rich Low_complexity Low_complexity 1 28 0 408 257 90 90 chr6 84179862 84180150 -105099404 + HAL1 LINE L1 1 288 -2219 1181 121 11 0 chr6 84180287 84180469 -105099085 + L1MB3 LINE L1 5998 6181 -2 1594 195 0 10 chr6 84180538 84180840 -105098714 + AluJb SINE Alu 1 299 -13 21 0 0 0 chr6 84180976 84180997 -105098557 + AT_rich Low_complexity Low_complexity 1 21 0 2130 116 3 0 chr6 84181289 84181573 -105097981 - AluSx SINE Alu -15 297 13 1677 91 0 5 chr6 84181751 84181970 -105097584 + AluSc SINE Alu 1 218 -91 23 54 0 0 chr6 84182857 84182894 -105096660 + AT_rich Low_complexity Low_complexity 1 37 0 369 268 76 40 chr6 84183208 84183406 -105096148 - L1MA9 LINE L1 -137 6175 5971 183 80 0 0 chr6 84183406 84183431 -105096123 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 5395 89 8 11 chr6 84183434 84184164 -105095390 - L1PA13 LINE L1 -19 6144 5417 560 206 0 10 chr6 84184166 84184268 -105095286 - AluSg/x SINE Alu -23 287 187 1257 161 13 17 chr6 84184368 84184598 -105094956 - L1 LINE L1 -2082 4064 3836 639 291 56 5 chr6 84184639 84184835 -105094719 + MIR SINE MIR 13 218 -44 21 57 0 0 chr6 84184854 84184889 -105094665 + AT_rich Low_complexity Low_complexity 1 35 0 1220 176 101 7 chr6 84184958 84185254 -105094300 - MER33 DNA MER1_type 0 324 1 382 244 12 0 chr6 84185293 84185379 -105094175 - MLT1H1 LTR MaLR 0 555 469 22 0 0 0 chr6 84185857 84185879 -105093675 + AT_rich Low_complexity Low_complexity 1 22 0 987 239 0 0 chr6 84186683 84186871 -105092683 + MER58A DNA MER1_type 2 189 -35 24 0 0 0 chr6 84187046 84187070 -105092484 + AT_rich Low_complexity Low_complexity 1 24 0 335 281 215 33 chr6 84187855 84188125 -105091429 - L2 LINE L2 -988 2326 2008 213 305 0 17 chr6 84188339 84188398 -105091156 - L2 LINE L2 -1 3271 3214 284 327 220 0 chr6 84188550 84188700 -105090854 + L2 LINE L2 3089 3271 -1 349 232 111 0 chr6 84190390 84190489 -105089065 - L1MC4 LINE L1 -945 7097 6988 1493 216 58 41 chr6 84190494 84190894 -105088660 + MER114 LTR ERV 37 446 -202 3619 134 27 58 chr6 84190894 84191566 -105087988 + L1MA8 LINE L1 5641 6291 0 1493 216 58 41 chr6 84191566 84191600 -105087954 + MER114 LTR ERV 446 478 -170 186 328 35 17 chr6 84191826 84191942 -105087612 + L2 LINE L2 2934 3051 -221 251 273 16 66 chr6 84192181 84192259 -105087295 + Charlie7 DNA MER1_type 3 74 -2538 2435 78 0 7 chr6 84192259 84192568 -105086986 - AluY SINE Alu -4 307 1 251 273 16 66 chr6 84192568 84192610 -105086944 + Charlie7 DNA MER1_type 74 117 -2495 2156 122 3 3 chr6 84192792 84193095 -105086459 + AluSx SINE Alu 1 303 -9 695 237 134 27 chr6 84193096 84193283 -105086271 + HAL1 LINE L1 2039 2205 -302 2080 118 3 3 chr6 84193283 84193571 -105085983 + AluSx SINE Alu 1 288 -24 695 237 134 27 chr6 84193571 84193582 -105085972 + HAL1 LINE L1 2205 2213 -294 2270 104 3 0 chr6 84193582 84193890 -105085664 + AluSc SINE Alu 1 309 0 695 237 134 27 chr6 84193890 84194019 -105085535 + HAL1 LINE L1 2213 2402 -105 2122 104 7 7 chr6 84194048 84194364 -105085190 - AluSp SINE Alu 0 313 5 1907 162 3 3 chr6 84194371 84194667 -105084887 - AluJb SINE Alu -14 298 3 22 35 0 0 chr6 84194759 84194788 -105084766 + AT_rich Low_complexity Low_complexity 1 29 0 2235 86 14 3 chr6 84195704 84195996 -105083558 - AluSx SINE Alu -17 295 1 208 139 0 0 chr6 84196198 84196234 -105083320 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 1933 148 10 3 chr6 84196237 84196548 -105083006 + AluSq SINE Alu 1 313 0 216 0 0 0 chr6 84196839 84196863 -105082691 + (T)n Simple_repeat Simple_repeat 1 24 0 2033 119 11 0 chr6 84197018 84197303 -105082251 - AluSx SINE Alu -24 288 1 804 196 7 0 chr6 84197946 84198094 -105081460 - AluJo SINE Alu -161 151 3 2620 48 0 0 chr6 84198746 84199057 -105080497 + AluY SINE Alu 1 311 0 850 154 0 0 chr6 84199184 84199307 -105080247 + AluSq/x SINE Alu 1 123 -189 1803 166 13 7 chr6 84199828 84200129 -105079425 + AluJb SINE Alu 3 305 -7 22 35 0 0 chr6 84200671 84200700 -105078854 + AT_rich Low_complexity Low_complexity 1 29 0 1236 164 36 16 chr6 84201445 84201695 -105077859 - MER58B DNA MER1_type -31 310 56 1145 154 98 36 chr6 84201718 84202023 -105077531 + MER33 DNA MER1_type 1 324 0 2250 123 0 0 chr6 84202375 84202677 -105076877 - AluSx SINE Alu -8 304 3 215 231 31 0 chr6 84203218 84203283 -105076271 + T-rich Low_complexity Low_complexity 4 70 0 184 279 150 41 chr6 84203353 84203500 -105076054 + MIR SINE MIR 59 221 -41 1793 178 123 24 chr6 84203653 84204035 -105075519 - MSTB LTR MaLR 0 426 7 271 269 0 0 chr6 84204039 84204117 -105075437 - L1MC4a LINE L1 -1797 6011 5934 1585 181 8 0 chr6 84204123 84204389 -105075165 - AluJb SINE Alu -13 299 32 2416 221 64 25 chr6 84204422 84205075 -105074479 - L1MC4a LINE L1 -1864 5944 5266 745 283 17 21 chr6 84205415 84205655 -105073899 + MIR SINE MIR 19 257 -5 327 49 0 0 chr6 84206514 84206555 -105072999 + (TG)n Simple_repeat Simple_repeat 2 42 0 207 0 0 0 chr6 84206570 84206593 -105072961 + (T)n Simple_repeat Simple_repeat 1 23 0 2233 105 0 16 chr6 84206960 84207264 -105072290 - AluSq SINE Alu -14 299 1 207 0 0 0 chr6 84207954 84207977 -105071577 + (TG)n Simple_repeat Simple_repeat 2 24 0 1917 122 41 0 chr6 84208318 84208615 -105070939 - AluSx SINE Alu 0 308 1 322 200 124 29 chr6 84208617 84208722 -105070832 - L2 LINE L2 -12 3301 3187 2306 100 0 13 chr6 84210841 84211152 -105068402 + AluSp SINE Alu 1 307 -6 1755 153 45 0 chr6 84211752 84212040 -105067514 + AluJb SINE Alu 1 301 -11 1356 162 17 4 chr6 84212420 84212654 -105066900 + MER96B DNA MER1_type? 1 237 -180 2648 74 3 0 chr6 84212744 84213096 -105066458 - L1PA13 LINE L1 -2 6161 5809 21 0 0 0 chr6 84213301 84213322 -105066232 + AT_rich Low_complexity Low_complexity 1 21 0 200 300 0 0 chr6 84213656 84213706 -105065848 + (TTG)n Simple_repeat Simple_repeat 2 51 0 602 284 64 20 chr6 84214177 84214427 -105065127 + MIR SINE MIR 1 261 -1 226 217 62 39 chr6 84214482 84214611 -105064943 - Charlie7 DNA MER1_type -2 2610 2479 1923 148 7 3 chr6 84214618 84214916 -105064638 + AluSx SINE Alu 1 299 -13 21 71 0 0 chr6 84216061 84216103 -105063451 + AT_rich Low_complexity Low_complexity 1 42 0 789 257 60 5 chr6 84216761 84216970 -105062584 + MIR SINE MIR 4 224 -38 515 267 134 8 chr6 84217576 84217838 -105061716 - L1M4 LINE L1 -1674 4472 4178 205 74 74 25 chr6 84218098 84218179 -105061375 + (TA)n Simple_repeat Simple_repeat 1 85 0 224 313 0 21 chr6 84218511 84218607 -105060947 + (TA)n Simple_repeat Simple_repeat 2 95 0 742 160 155 52 chr6 84218625 84218838 -105060716 - MER46A DNA MER2_type 0 236 2 360 0 0 0 chr6 84219542 84219582 -105059972 + (CA)n Simple_repeat Simple_repeat 2 41 0 378 208 387 0 chr6 84219680 84219848 -105059706 - MIR SINE MIR -13 249 17 2000 127 38 0 chr6 84220681 84220973 -105058581 + AluSx SINE Alu 1 303 -9 473 342 96 8 chr6 84221648 84221888 -105057666 - MIR SINE MIR 0 262 2 1048 280 98 0 chr6 84222172 84222490 -105057064 + MER20B DNA MER1_type 1 349 -434 409 291 52 23 chr6 84222523 84222695 -105056859 + MLT1L LTR MaLR 154 330 -285 189 107 0 0 chr6 84222695 84222723 -105056831 + (TC)n Simple_repeat Simple_repeat 2 29 0 292 346 55 25 chr6 84224276 84224478 -105055076 - L2 LINE L2 -2897 417 210 552 91 0 0 chr6 84224977 84225065 -105054489 + (TG)n Simple_repeat Simple_repeat 2 89 0 23 0 0 0 chr6 84225563 84225586 -105053968 + AT_rich Low_complexity Low_complexity 1 23 0 204 40 0 0 chr6 84225710 84225735 -105053819 + (CA)n Simple_repeat Simple_repeat 2 26 0 234 211 0 24 chr6 84225792 84225915 -105053639 + (CA)n Simple_repeat Simple_repeat 2 121 0 434 123 54 0 chr6 84225947 84226077 -105053477 + (TA)n Simple_repeat Simple_repeat 2 138 0 275 267 44 11 chr6 84226435 84226525 -105053029 + L3 LINE CR1 639 731 -846 461 221 38 0 chr6 84226779 84226910 -105052644 + L1MB4 LINE L1 5314 5449 -672 2974 151 31 24 chr6 84227021 84227265 -105052289 + L1MB4 LINE L1 5588 5829 -351 2400 77 0 3 chr6 84227265 84227563 -105051991 + AluSg SINE Alu 1 297 -13 2974 151 31 24 chr6 84227563 84227906 -105051648 + L1MB4 LINE L1 5829 6179 -1 6361 140 35 11 chr6 84228330 84229437 -105050117 + L1P LINE L1 4076 5209 -937 1022 197 38 8 chr6 84229538 84229777 -105049777 - MER33 DNA MER1_type -78 246 1 332 132 0 0 chr6 84229784 84229837 -105049717 - MIR SINE MIR -63 199 147 277 285 51 32 chr6 84230183 84230341 -105049213 - MER117 DNA MER1_type -36 161 1 189 304 224 54 chr6 84231416 84231737 -105047817 + L2 LINE L2 1711 1976 -1338 303 49 0 0 chr6 84231737 84231778 -105047776 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 1379 195 84 8 chr6 84231780 84232042 -105047512 - AluJo SINE Alu -28 284 3 189 304 224 54 chr6 84232042 84232270 -105047284 + L2 LINE L2 1976 2357 -957 1039 123 32 0 chr6 84233200 84233354 -105046200 - AluSg/x SINE Alu -8 302 144 1515 231 15 3 chr6 84233805 84234139 -105045415 + MER58B DNA MER1_type 4 341 0 201 319 0 0 chr6 84234310 84234357 -105045197 - L2 LINE L2 -16 3256 3210 7771 29 0 0 chr6 84234391 84235312 -105044242 - L1PA4 LINE L1 -1578 4568 3648 6932 35 0 1 chr6 84235299 84236662 -105042892 + L1PA4 LINE L1 4542 5903 -252 * 385 324 71 16 chr6 84236763 84236945 -105042609 - L2 LINE L2 -618 2696 2505 279 286 133 0 chr6 84236993 84237091 -105042463 - MIR SINE MIR -4 258 148 414 268 124 13 chr6 84237091 84237244 -105042310 - MIR SINE MIR -70 192 23 24 0 0 0 chr6 84238014 84238038 -105041516 + AT_rich Low_complexity Low_complexity 1 24 0 654 178 39 16 chr6 84238706 84238835 -105040719 + MIR SINE MIR 88 219 -43 198 370 103 7 chr6 84239110 84239256 -105040298 - MIR SINE MIR -62 200 41 663 270 95 18 chr6 84239333 84239555 -105039999 + MIR SINE MIR 24 262 0 212 394 78 28 chr6 84239716 84239858 -105039696 + L2 LINE L2 3124 3272 0 27 29 0 0 chr6 84240602 84240636 -105038918 + AT_rich Low_complexity Low_complexity 1 34 0 246 128 0 0 chr6 84241471 84241510 -105038044 + (TG)n Simple_repeat Simple_repeat 2 40 0 563 180 0 101 chr6 84241603 84241742 -105037812 + FLAM_A SINE Alu 1 125 -8 717 97 0 0 chr6 84241743 84241846 -105037708 + (TA)n Simple_repeat Simple_repeat 1 103 0 2279 153 113 27 chr6 84242048 84242525 -105037029 + MLT2B1 LTR ERVL 1 518 -2 1969 152 0 3 chr6 84242569 84242865 -105036689 + AluSx SINE Alu 1 295 -17 879 166 0 72 chr6 84242873 84242930 -105036624 + L1MA7 LINE L1 6075 6135 -156 1740 124 98 4 chr6 84242930 84243205 -105036349 + AluSg SINE Alu 1 301 -9 2380 57 0 23 chr6 84243205 84243505 -105036049 + AluY SINE Alu 1 293 -18 879 166 0 72 chr6 84243505 84243669 -105035885 + L1MA7 LINE L1 6133 6281 -10 429 333 29 23 chr6 84243781 84243955 -105035599 - MER5B DNA MER1_type -1 177 3 734 182 133 0 chr6 84244017 84244174 -105035380 + MER5A DNA MER1_type 4 184 -5 429 232 232 7 chr6 84244984 84245122 -105034432 - MIR SINE MIR -86 176 8 319 162 147 0 chr6 84246517 84246585 -105032969 - MER116 DNA Mariner 0 80 3 216 387 24 8 chr6 84247749 84247873 -105031681 + L2 LINE L2 2621 2746 -568 472 282 114 7 chr6 84248377 84248526 -105031028 - MIR3 SINE MIR -23 185 21 331 318 0 9 chr6 84248987 84249097 -105030457 + MER5B DNA MER1_type 10 118 -60 227 288 212 30 chr6 84249115 84249313 -105030241 - L2 LINE L2 0 3313 3080 * 1301 321 76 42 chr6 84249296 84249599 -105029955 - L2 LINE L2 -468 2846 2555 1590 129 63 16 chr6 84249599 84249854 -105029700 + AluJb SINE Alu 44 310 -2 1301 321 76 42 chr6 84249854 84250361 -105029193 - L2 LINE L2 -759 2555 2008 335 320 94 58 chr6 84250362 84250796 -105028758 - L2 LINE L2 -1510 1804 1355 367 320 54 0 chr6 84251539 84251686 -105027868 + L1MD2 LINE L1 6202 6356 -3 1965 118 0 4 chr6 84251729 84251999 -105027555 + AluSx SINE Alu 33 301 -11 2254 111 0 10 chr6 84252322 84252629 -105026925 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr6 84252644 84252665 -105026889 + AT_rich Low_complexity Low_complexity 1 21 0 446 301 48 42 chr6 84252667 84252833 -105026721 + MIR3 SINE MIR 30 196 -12 268 425 37 0 chr6 84253413 84253547 -105026007 - L2 LINE L2 0 3272 3134 684 110 73 44 chr6 84253561 84253697 -105025857 + L1MB3 LINE L1 6043 6182 -1 281 262 136 10 chr6 84254493 84254596 -105024958 - MER5B DNA MER1_type 0 178 63 466 291 44 39 chr6 84254789 84254971 -105024583 + MER5A DNA MER1_type 7 189 0 2368 141 32 12 chr6 84255330 84255735 -105023819 + L1MB3 LINE L1 5770 6182 -1 2027 141 3 0 chr6 84255756 84256063 -105023491 + AluSx SINE Alu 1 308 0 378 253 71 10 chr6 84256707 84256806 -105022748 + MIR3 SINE MIR 5 109 -99 243 243 167 30 chr6 84257873 84258202 -105021352 + L1MEd LINE L1 844 1217 -4902 363 224 60 45 chr6 84258537 84258738 -105020816 + L1MEd LINE L1 2134 2337 -3792 223 192 27 0 chr6 84258747 84258820 -105020734 + (TA)n Simple_repeat Simple_repeat 1 75 0 183 129 0 0 chr6 84258871 84258902 -105020652 + (CA)n Simple_repeat Simple_repeat 2 32 0 2582 62 0 3 chr6 84259457 84259764 -105019790 - AluY SINE Alu -4 307 2 1387 125 26 30 chr6 84259946 84260178 -105019376 - L1MA7 LINE L1 -25 6266 6036 2437 76 0 10 chr6 84261222 84261526 -105018028 - AluSq SINE Alu -12 301 1 2743 155 48 54 chr6 84261593 84262110 -105017444 + MER67D LTR ERV1 1 514 0 254 306 117 0 chr6 84262186 84262297 -105017257 + L2 LINE L2 2130 2253 -1061 916 156 0 0 chr6 84262799 84262940 -105016614 + AluJb SINE Alu 1 141 -171 23 33 0 0 chr6 84262957 84262987 -105016567 + AT_rich Low_complexity Low_complexity 1 30 0 3263 81 7 2 chr6 84264511 84264931 -105014623 + L1PA13 LINE L1 5736 6157 -6 263 186 93 0 chr6 84265432 84265518 -105014036 + L1MC4 LINE L1 6613 6706 -1336 212 324 232 16 chr6 84266206 84266753 -105012801 + L2 LINE L2 1965 2629 -685 2418 83 0 3 chr6 84267154 84267455 -105012099 - AluSp SINE Alu -13 300 1 1117 188 50 23 chr6 84267476 84267694 -105011860 + MER58A DNA MER1_type 1 224 0 277 368 90 7 chr6 84267726 84267870 -105011684 + L2 LINE L2 3092 3247 -25 2205 97 0 32 chr6 84269728 84270039 -105009515 + AluSg SINE Alu 1 301 -9 2177 85 4 7 chr6 84270172 84270453 -105009101 + AluSg1 SINE Alu 5 284 -25 1793 144 3 38 chr6 84270868 84271160 -105008394 + AluJo SINE Alu 1 282 -30 22 0 0 0 chr6 84271164 84271186 -105008368 + AT_rich Low_complexity Low_complexity 1 22 0 2363 76 0 0 chr6 84271191 84271480 -105008074 - AluY SINE Alu -22 289 1 242 358 40 28 chr6 84272180 84272356 -105007198 - L2 LINE L2 -290 2982 2805 210 150 0 0 chr6 84273072 84273112 -105006442 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 318 257 144 84 chr6 84275158 84275360 -105004194 - MIR SINE MIR -12 250 37 262 241 198 0 chr6 84276542 84276658 -105002896 + L1ME LINE L1 5350 5488 -633 370 261 23 11 chr6 84278866 84278954 -105000600 + MER81 DNA DNA 26 114 0 818 233 32 0 chr6 84279151 84279340 -105000214 - MIR SINE MIR 0 262 68 927 253 112 49 chr6 84279340 84279716 -104999838 + L2 LINE L2 2667 3092 -221 2085 93 58 3 chr6 84279716 84280007 -104999547 + AluSp SINE Alu 2 308 -5 927 253 112 49 chr6 84280007 84280244 -104999310 + L2 LINE L2 3092 3313 0 229 265 0 0 chr6 84280255 84280304 -104999250 - MIR SINE MIR -198 64 16 2087 98 25 4 chr6 84281234 84281559 -104997995 + AluSx SINE Alu 3 333 0 203 260 39 13 chr6 84281597 84281674 -104997880 - MIR SINE MIR -48 214 136 266 0 0 29 chr6 84281675 84281710 -104997844 + (CA)n Simple_repeat Simple_repeat 2 35 0 1685 220 160 36 chr6 84281715 84282215 -104997339 + MLT1F1 LTR MaLR 1 562 -5 180 179 0 0 chr6 84282485 84282524 -104997030 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 240 32 0 0 chr6 84282696 84282727 -104996827 - MER33 DNA MER1_type -37 287 257 1157 103 0 40 chr6 84282727 84282902 -104996652 + AluSg/x SINE Alu 129 296 -16 2318 114 0 0 chr6 84282904 84283203 -104996351 + AluSx SINE Alu 1 299 -13 8563 78 5 15 chr6 84283209 84284291 -104995263 - MER11C LTR ERVK 0 1071 1 25 0 0 0 chr6 84284293 84284318 -104995236 + AT_rich Low_complexity Low_complexity 1 25 0 727 218 0 8 chr6 84284318 84284451 -104995103 + FLAM_C SINE Alu 2 133 0 391 62 62 0 chr6 84284455 84284536 -104995018 - MER33 DNA MER1_type -69 255 170 2537 77 0 0 chr6 84284553 84284863 -104994691 - AluY SINE Alu -1 310 1 1938 144 22 0 chr6 84284863 84285141 -104994413 - AluSx SINE Alu -28 284 1 22 25 0 25 chr6 84285155 84285176 -104994378 + AT_rich Low_complexity Low_complexity 1 22 -17 824 191 8 0 chr6 84285176 84285307 -104994247 + FLAM_C SINE Alu 2 133 0 22 25 0 25 chr6 84285307 84285325 -104994229 + AT_rich Low_complexity Low_complexity 22 39 0 551 182 84 52 chr6 84285328 84285381 -104994173 - MER33 DNA MER1_type -2426 159 109 1828 97 22 93 chr6 84285381 84285702 -104993852 - AluSx SINE Alu -14 298 1 551 182 84 52 chr6 84285702 84285802 -104993752 - MER33 DNA MER1_type -2476 109 1 512 267 85 66 chr6 84285802 84286217 -104993337 + MLT1L LTR MaLR 163 608 -7 2225 123 0 3 chr6 84286305 84286607 -104992947 - AluSx SINE Alu -11 301 1 5251 104 138 130 chr6 84286760 84288314 -104991240 + pTR5 LTR ERV1 742 2438 0 306 322 67 29 chr6 84288919 84289112 -104990442 + MIR3 SINE MIR 8 208 -54 750 134 0 39 chr6 84289114 84289241 -104990313 - FLAM_C SINE Alu -5 138 17 2221 100 3 13 chr6 84290003 84290302 -104989252 + AluSq SINE Alu 5 300 -13 23 0 0 0 chr6 84290302 84290325 -104989229 + AT_rich Low_complexity Low_complexity 1 23 0 2331 88 3 13 chr6 84290919 84291225 -104988329 + AluSx SINE Alu 1 303 -9 2336 73 0 26 chr6 84291468 84291770 -104987784 - AluY SINE Alu -17 294 1 506 191 54 113 chr6 84291807 84291890 -104987664 + MER5A DNA MER1_type 1 71 -118 2154 88 53 0 chr6 84291890 84292175 -104987379 + AluSq SINE Alu 2 301 -12 506 191 54 113 chr6 84292175 84292259 -104987295 + MER5A DNA MER1_type 71 158 -31 1723 151 58 0 chr6 84292968 84293246 -104986308 + AluJb SINE Alu 1 294 -18 1931 129 63 0 chr6 84293727 84294013 -104985541 - AluSx SINE Alu -8 304 1 414 257 171 13 chr6 84294015 84294167 -104985387 - MER5A DNA MER1_type 0 189 14 686 178 39 0 chr6 84294183 84294312 -104985242 - MER58B DNA MER1_type 0 341 208 3825 100 115 22 chr6 84294318 84294496 -104985058 - MER41B LTR ERV1 0 635 475 2053 148 7 0 chr6 84294496 84294801 -104984753 - AluSq SINE Alu -6 307 1 3825 100 115 22 chr6 84294801 84295203 -104984351 - MER41B LTR ERV1 -160 475 1 182 398 61 0 chr6 84295205 84295303 -104984251 + MIR SINE MIR 44 147 -61 718 169 22 44 chr6 84295820 84295956 -104983598 - FLAM_C SINE Alu 0 133 1 955 104 0 130 chr6 84295967 84296159 -104983395 - AluSg/x SINE Alu -9 301 135 2431 62 3 3 chr6 84296298 84296590 -104982964 + AluSc SINE Alu 1 292 -17 2229 110 3 0 chr6 84296647 84296948 -104982606 + AluSx SINE Alu 1 302 -10 2366 112 0 0 chr6 84297567 84297871 -104981683 + AluSg SINE Alu 1 304 -6 2644 49 0 0 chr6 84297953 84298259 -104981295 + AluY SINE Alu 1 306 -5 2051 118 10 3 chr6 84298326 84298623 -104980931 - AluSx SINE Alu -13 299 1 222 264 132 25 chr6 84299330 84299451 -104980103 + MIR SINE MIR 32 165 -97 2446 79 7 0 chr6 84299599 84299903 -104979651 - AluSx SINE Alu -6 306 1 1329 91 0 0 chr6 84300009 84300185 -104979369 + AluSg/x SINE Alu 134 309 -3 228 67 0 0 chr6 84300186 84300216 -104979338 + (CA)n Simple_repeat Simple_repeat 2 31 0 1573 179 33 26 chr6 84300241 84300543 -104979011 + AluJo SINE Alu 1 304 -8 1328 140 9 128 chr6 84301719 84302047 -104977507 + AluJb SINE Alu 2 290 -12 2301 106 0 0 chr6 84303176 84303477 -104976077 - AluSx SINE Alu -11 301 1 180 97 0 0 chr6 84303482 84303513 -104976041 + (T)n Simple_repeat Simple_repeat 1 31 0 353 255 0 39 chr6 84303546 84303648 -104975906 - L1ME4a LINE L1 -57 6064 5967 2116 109 3 7 chr6 84303852 84304146 -104975408 - AluSg SINE Alu -17 293 1 530 125 100 0 chr6 84304176 84304335 -104975219 + AluSg/x SINE Alu 195 361 0 2267 105 3 3 chr6 84304367 84304663 -104974891 - AluSp SINE Alu -17 296 1 1917 141 3 0 chr6 84304841 84305124 -104974430 + AluJb SINE Alu 11 294 -18 776 178 0 0 chr6 84305198 84305316 -104974238 + FLAM_C SINE Alu 1 118 -15 2920 6 0 0 chr6 84305392 84305703 -104973851 + AluYa5 SINE Alu 1 311 0 1664 172 28 14 chr6 84305724 84306009 -104973545 - AluJo SINE Alu -13 299 11 411 133 0 0 chr6 84306110 84306170 -104973384 - AluS SINE Alu -241 60 1 230 152 43 0 chr6 84306220 84306266 -104973288 - Charlie7 DNA MER1_type -13 2599 2552 3182 139 140 30 chr6 84306269 84306380 -104973174 - MER39 LTR ERV1 -2 705 608 2516 58 0 7 chr6 84306380 84306688 -104972866 - AluY SINE Alu -5 306 1 3182 139 140 30 chr6 84306688 84307211 -104972343 - MER39 LTR ERV1 -99 608 1 6540 131 11 9 chr6 84307266 84308336 -104971218 + L1MA4 LINE L1 5222 6295 -5 270 208 19 0 chr6 84308392 84308445 -104971109 - Charlie7 DNA MER1_type -2558 54 1 200 200 0 67 chr6 84308859 84308919 -104970635 - L2 LINE L2 -16 3297 3242 276 30 0 0 chr6 84309724 84309757 -104969797 + (CA)n Simple_repeat Simple_repeat 2 34 0 2380 99 0 0 chr6 84309844 84310147 -104969407 - AluSg SINE Alu -7 303 1 6364 149 33 7 chr6 84310534 84311807 -104967747 - L1MA10 LINE L1 -7 6327 5026 222 37 0 0 chr6 84311962 84311989 -104967565 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 435 197 0 0 chr6 84312017 84312093 -104967461 + L1M3c LINE L1 913 988 -5153 484 226 24 0 chr6 84312791 84312915 -104966639 + FRAM SINE Alu 43 169 -7 2234 126 45 25 chr6 84313393 84313750 -104965804 + THE1B LTR MaLR 1 364 0 180 263 0 0 chr6 84313865 84313903 -104965651 - L2 LINE L2 -22 3250 3213 2368 95 0 0 chr6 84313952 84314248 -104965306 - AluSg SINE Alu -14 296 1 733 178 0 0 chr6 84314271 84314389 -104965165 - FLAM_C SINE Alu -15 118 1 185 185 123 31 chr6 84314397 84314462 -104965092 - MIR SINE MIR -108 154 84 913 155 54 6 chr6 84315018 84315186 -104964368 + AluSg/x SINE Alu 87 262 -50 656 111 74 0 chr6 84315367 84315475 -104964079 - L1MC2 LINE L1 -403 5941 5826 2235 120 0 0 chr6 84315477 84315776 -104963778 - AluSx SINE Alu 0 312 14 559 155 0 0 chr6 84315901 84315998 -104963556 - AluSg/x SINE Alu -1 309 213 712 122 0 0 chr6 84316000 84316098 -104963456 - AluSq/x SINE Alu -201 112 15 1282 107 24 115 chr6 84316098 84316168 -104963386 + AluSx SINE Alu 62 137 -175 2080 117 30 20 chr6 84316168 84316468 -104963086 + AluSg SINE Alu 1 303 -7 252 0 0 0 chr6 84316468 84316496 -104963058 + (TA)n Simple_repeat Simple_repeat 2 29 0 1282 107 24 115 chr6 84316496 84316722 -104962832 + AluSx SINE Alu 135 312 0 921 213 0 0 chr6 84316725 84316889 -104962665 + FRAM SINE Alu 1 164 -2 2230 104 0 26 chr6 84316899 84317207 -104962347 + AluSx SINE Alu 1 300 -12 2169 119 65 34 chr6 84317279 84317631 -104961923 + MLT1A1 LTR MaLR 1 363 -2 1998 150 0 23 chr6 84317651 84317957 -104961597 - AluSx SINE Alu -13 299 1 477 124 31 0 chr6 84317966 84318063 -104961491 + (TA)n Simple_repeat Simple_repeat 2 101 0 734 187 0 29 chr6 84318065 84318204 -104961350 - AluJo SINE Alu -177 135 1 185 0 40 0 chr6 84318694 84318719 -104960835 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2163 147 0 3 chr6 84319424 84319736 -104959818 + AluJb SINE Alu 1 311 -1 667 285 124 27 chr6 84319739 84320287 -104959267 + L1M4 LINE L1 4233 4833 -1313 444 167 39 0 chr6 84320338 84320416 -104959138 - MLT1J LTR MaLR -24 487 407 1606 147 74 0 chr6 84320423 84320681 -104958873 + AluJb SINE Alu 5 281 -31 222 118 0 0 chr6 84320892 84320926 -104958628 + (A)n Simple_repeat Simple_repeat 1 34 0 1565 164 53 26 chr6 84320935 84321239 -104958315 + AluJo SINE Alu 1 312 0 2358 99 3 0 chr6 84321286 84321590 -104957964 - AluSq SINE Alu -8 305 1 968 222 129 4 chr6 84321621 84321846 -104957708 - MLT1J LTR MaLR -207 304 52 23 33 0 0 chr6 84322158 84322188 -104957366 + AT_rich Low_complexity Low_complexity 1 30 0 2206 122 3 0 chr6 84322307 84322611 -104956943 - AluSx SINE Alu -5 307 3 794 122 78 61 chr6 84323850 84324003 -104955551 - L1MA9 LINE L1 0 6312 6154 300 70 0 0 chr6 84324003 84324046 -104955508 + (TG)n Simple_repeat Simple_repeat 2 44 0 794 122 78 61 chr6 84324046 84324072 -104955482 - L1MA9 LINE L1 -158 6154 6130 203 304 43 0 chr6 84324485 84324600 -104954954 - L2 LINE L2 -3 3269 3150 6689 64 16 56 chr6 84324686 84326634 -104952920 + SVA Other Other 1 1386 0 2244 101 0 7 chr6 84326644 84326941 -104952613 + AluSq SINE Alu 1 295 -18 289 226 17 78 chr6 84326991 84327106 -104952448 - MIR SINE MIR -36 226 119 1479 118 68 62 chr6 84327223 84327346 -104952208 + MER33 DNA MER1_type 1 122 -2463 2400 95 0 19 chr6 84327346 84327663 -104951891 + AluSx SINE Alu 1 311 -1 1479 118 68 62 chr6 84327663 84327860 -104951694 + MER33 DNA MER1_type 122 323 -1 2310 94 10 0 chr6 84327909 84328336 -104951218 + AluSq SINE Alu 1 430 0 225 209 0 0 chr6 84328425 84328468 -104951086 + A-rich Low_complexity Low_complexity 1 43 0 2233 89 21 3 chr6 84328470 84328752 -104950802 + AluSq SINE Alu 1 287 -26 23 0 0 0 chr6 84328752 84328775 -104950779 + AT_rich Low_complexity Low_complexity 1 23 0 1385 204 51 7 chr6 84328874 84329148 -104950406 + AluJo SINE Alu 1 286 -26 4731 169 93 23 chr6 84329193 84329867 -104949687 + L1MC3 LINE L1 6669 7443 -342 2143 91 0 30 chr6 84329867 84330164 -104949390 + AluSc SINE Alu 1 288 -21 4731 169 93 23 chr6 84330164 84330533 -104949021 + L1MC3 LINE L1 7443 7785 0 267 189 19 0 chr6 84330608 84330661 -104948893 + MER5A DNA MER1_type 44 97 -92 654 258 67 70 chr6 84330661 84330975 -104948579 - MLT2D LTR ERVL -11 403 91 278 247 27 0 chr6 84331527 84331600 -104947954 + MER116 DNA Mariner 2 76 -4 1870 133 26 32 chr6 84331640 84331948 -104947606 + AluJo SINE Alu 1 306 -6 297 0 0 0 chr6 84332901 84332934 -104946620 + (CGGGGG)n Simple_repeat Simple_repeat 4 36 0 570 220 85 19 chr6 84333898 84334066 -104945488 + L1M1 LINE L1 5352 5534 -650 1199 211 81 27 chr6 84334376 84334614 -104944940 - L1MC5 LINE L1 -60 7901 7677 1960 57 0 46 chr6 84334614 84334904 -104944650 + AluY SINE Alu 35 312 0 1199 211 81 27 chr6 84334904 84334948 -104944606 - L1MC5 LINE L1 -284 7677 7637 2534 69 0 0 chr6 84334948 84335254 -104944300 - AluSx SINE Alu -6 306 1 1199 211 81 27 chr6 84335254 84335376 -104944178 - L1MC5 LINE L1 -324 7637 7473 360 193 34 34 chr6 84335385 84335473 -104944081 - L1MC5 LINE L1 -557 7404 7317 344 193 0 57 chr6 84335563 84335651 -104943903 - L2 LINE L2 -42 3271 3189 1751 151 12 74 chr6 84335719 84335895 -104943659 - AluJb SINE Alu -7 305 157 2537 55 3 0 chr6 84335895 84336205 -104943349 - AluY SINE Alu 0 311 1 1751 151 12 74 chr6 84336205 84336353 -104943201 - AluJb SINE Alu -155 157 1 309 234 21 0 chr6 84336668 84336762 -104942792 - MIR SINE MIR 0 262 167 1973 153 0 10 chr6 84336816 84337111 -104942443 - AluJb SINE Alu -20 292 1 2209 127 0 0 chr6 84337139 84337431 -104942123 + AluSx SINE Alu 6 297 -15 269 294 109 30 chr6 84337799 84338000 -104941554 - MIR SINE MIR -26 236 20 2464 75 0 3 chr6 84338341 84338646 -104940908 - AluSq SINE Alu -9 304 1 515 303 31 54 chr6 84338962 84339223 -104940331 + L2 LINE L2 2463 2717 -597 1894 177 3 10 chr6 84339457 84339768 -104939786 + AluJo SINE Alu 2 310 -2 2616 32 0 13 chr6 84340616 84340926 -104938628 - AluY SINE Alu -4 307 2 833 148 0 22 chr6 84341661 84341796 -104937758 + FLAM_C SINE Alu 2 133 0 2328 119 0 0 chr6 84342655 84342967 -104936587 + AluSq SINE Alu 1 312 -1 2252 83 7 3 chr6 84342972 84343262 -104936292 + AluY SINE Alu 1 291 -20 252 0 0 0 chr6 84343267 84343295 -104936259 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 222 260 91 13 chr6 84344001 84344078 -104935476 - MIR SINE MIR -168 94 12 2244 103 10 0 chr6 84345055 84345346 -104934208 + AluSx SINE Alu 3 296 -16 212 298 149 8 chr6 84345871 84345992 -104933562 + MIR SINE MIR 26 163 -99 189 74 0 0 chr6 84346350 84346377 -104933177 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2277 98 0 0 chr6 84346383 84346668 -104932886 - AluSx SINE Alu -27 285 1 974 108 0 0 chr6 84347615 84347744 -104931810 - FLAM_C SINE Alu -4 129 1 473 345 85 7 chr6 84348634 84348984 -104930570 - L2 LINE L2 -244 3069 2672 194 255 98 0 chr6 84349121 84349172 -104930382 + L2 LINE L2 3201 3256 -16 1594 157 44 37 chr6 84349339 84349633 -104929921 - AluJb SINE Alu -16 296 1 2385 91 0 0 chr6 84350393 84350689 -104928865 + AluSg SINE Alu 1 296 -14 691 183 48 8 chr6 84351199 84351325 -104928229 + FLAM_C SINE Alu 2 132 -11 25 31 0 0 chr6 84351325 84351357 -104928197 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr6 84351412 84351440 -104928114 + AT_rich Low_complexity Low_complexity 1 28 0 1033 138 38 146 chr6 84351590 84351742 -104927812 + MER46A DNA MER2_type 4 118 -2613 2225 106 0 0 chr6 84351742 84352025 -104927529 + AluSx SINE Alu 11 293 -19 1033 138 38 146 chr6 84352025 84352133 -104927421 + MER46A DNA MER2_type 118 236 0 197 33 33 0 chr6 84352521 84352551 -104927003 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1494 111 0 5 chr6 84352553 84352752 -104926802 - AluSg/x SINE Alu -31 279 82 593 156 0 0 chr6 84352853 84352943 -104926611 - AluJ/FLAM SINE Alu -221 91 2 21 36 0 0 chr6 84352952 84352980 -104926574 + AT_rich Low_complexity Low_complexity 1 28 0 880 159 0 0 chr6 84353009 84353141 -104926413 + AluJo SINE Alu 1 132 -170 180 0 0 0 chr6 84353344 84353364 -104926190 + (A)n Simple_repeat Simple_repeat 1 20 0 907 194 7 0 chr6 84353388 84353543 -104926011 + AluJo SINE Alu 134 289 -23 1855 186 3 0 chr6 84353799 84354106 -104925448 + AluJb SINE Alu 1 308 -4 1724 141 50 7 chr6 84354226 84354509 -104925045 - AluJo SINE Alu -7 305 11 253 302 11 124 chr6 84354626 84354891 -104924663 - L2 LINE L2 0 3272 3038 1401 200 175 11 chr6 84354893 84355253 -104924301 - MER90 LTR ERV1 0 614 196 473 189 0 0 chr6 84355253 84355343 -104924211 - AluSg/x SINE Alu -3 306 217 402 158 185 89 chr6 84355343 84355466 -104924088 - MER90 LTR ERV1 -415 160 19 2281 116 3 0 chr6 84355466 84355776 -104923778 - AluSp SINE Alu -2 311 1 402 158 185 89 chr6 84355776 84355798 -104923756 - MER90 LTR ERV1 -556 19 1 268 404 49 4 chr6 84355909 84356134 -104923420 - L2 LINE L2 -481 2833 2599 2327 120 0 0 chr6 84356250 84356558 -104922996 + AluSg SINE Alu 1 308 -2 1759 118 4 25 chr6 84356887 84357166 -104922388 + AluSx SINE Alu 34 306 -6 2105 104 7 4 chr6 84357175 84357491 -104922063 + AluSg1 SINE Alu 1 317 0 878 110 0 0 chr6 84357502 84357620 -104921934 + FLAM_C SINE Alu 1 118 -25 25 49 0 33 chr6 84357704 84357735 -104921819 + AT_rich Low_complexity Low_complexity 1 31 -28 2434 67 0 7 chr6 84357735 84358033 -104921521 - AluY SINE Alu -15 296 1 25 49 0 33 chr6 84358033 84358062 -104921492 + AT_rich Low_complexity Low_complexity 31 59 0 2235 90 0 10 chr6 84358062 84358352 -104921202 - AluSg SINE Alu -23 287 1 2243 120 0 0 chr6 84358482 84358782 -104920772 - AluSx SINE Alu -12 300 1 1816 148 31 7 chr6 84358803 84359094 -104920460 + AluJo SINE Alu 1 298 -14 1741 161 11 4 chr6 84359197 84359504 -104920050 + AluJb SINE Alu 1 309 0 858 117 0 36 chr6 84359824 84359961 -104919593 + FLAM_C SINE Alu 1 132 -1 2171 131 0 19 chr6 84360208 84360522 -104919032 + AluSg SINE Alu 1 308 -2 808 163 16 0 chr6 84360804 84360933 -104918621 - FLAM_A SINE Alu -2 131 1 229 246 33 0 chr6 84360934 84360995 -104918559 + CT-rich Low_complexity Low_complexity 3 65 0 1039 172 0 0 chr6 84360998 84361187 -104918367 - AluJb SINE Alu 0 317 129 271 145 0 32 chr6 84361187 84361249 -104918305 + (TCC)n Simple_repeat Simple_repeat 2 61 0 1461 161 0 73 chr6 84361252 84361538 -104918016 - AluJo SINE Alu -6 306 42 2275 121 0 0 chr6 84361672 84361978 -104917576 - AluSq SINE Alu -7 306 1 1584 193 10 10 chr6 84362015 84362310 -104917244 + AluJb SINE Alu 1 295 -17 2076 132 0 0 chr6 84362444 84362744 -104916810 + AluSg SINE Alu 1 300 0 1932 154 0 20 chr6 84362891 84363196 -104916358 + AluSx SINE Alu 1 299 -13 208 182 13 52 chr6 84363362 84363439 -104916115 + (TTGTG)n Simple_repeat Simple_repeat 1 74 0 1533 127 138 11 chr6 84363624 84363884 -104915670 - AluSg1 SINE Alu -16 293 1 689 222 42 0 chr6 84363918 84364085 -104915469 - L1MB4 LINE L1 -3 6177 6004 207 0 0 0 chr6 84364106 84364129 -104915425 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2139 132 0 0 chr6 84364197 84364493 -104915061 - AluSx SINE Alu -16 296 1 26 0 0 0 chr6 84364913 84364939 -104914615 + AT_rich Low_complexity Low_complexity 1 26 0 2174 125 0 7 chr6 84365139 84365442 -104914112 + AluSx SINE Alu 1 301 -11 355 293 71 14 chr6 84365553 84365693 -104913861 - MIR SINE MIR -62 200 53 29 0 0 0 chr6 84365701 84365730 -104913824 + AT_rich Low_complexity Low_complexity 1 29 0 776 169 0 0 chr6 84365730 84365848 -104913706 - FLAM_C SINE Alu -15 118 1 36 53 0 0 chr6 84366101 84366158 -104913396 + AT_rich Low_complexity Low_complexity 1 57 0 415 107 27 13 chr6 84366712 84366787 -104912767 + L1MD3 LINE L1 7904 7979 -16 1984 141 3 7 chr6 84367057 84367355 -104912199 + AluSx SINE Alu 1 297 -15 1399 145 189 8 chr6 84367376 84367624 -104911930 + AluSg1 SINE Alu 1 293 -16 2392 85 7 0 chr6 84367765 84368059 -104911495 - AluSc SINE Alu -13 296 1 1053 54 8 0 chr6 84368211 84368366 -104911188 + AluY SINE Alu 152 307 0 1679 162 0 44 chr6 84368545 84368655 -104910899 + AluSx SINE Alu 25 138 -174 2120 117 0 7 chr6 84368655 84368961 -104910593 + AluSg SINE Alu 1 304 0 1679 162 0 44 chr6 84368961 84369145 -104910409 + AluSx SINE Alu 138 307 -5 323 292 26 45 chr6 84369159 84369313 -104910241 + MER5A DNA MER1_type 1 151 -38 2146 107 24 13 chr6 84369321 84369619 -104909935 - AluSc SINE Alu -8 301 1 2249 101 3 0 chr6 84369641 84369937 -104909617 - AluSp SINE Alu -16 297 1 2260 89 0 35 chr6 84370102 84370415 -104909139 - AluSp SINE Alu -11 302 1 1906 153 3 28 chr6 84370479 84370799 -104908755 - AluJb SINE Alu 0 312 1 2030 118 4 4 chr6 84371337 84371617 -104907937 - AluSx SINE Alu -32 280 1 2003 142 7 0 chr6 84371687 84371983 -104907571 + AluJb SINE Alu 1 298 -14 2142 115 24 0 chr6 84371987 84372274 -104907280 + AluSx SINE Alu 4 297 -15 319 188 75 0 chr6 84372449 84372529 -104907025 - MER3 DNA MER1_type -1 208 123 2382 88 0 0 chr6 84372531 84372826 -104906728 + AluSc SINE Alu 1 295 -14 2125 122 3 3 chr6 84372834 84373128 -104906426 + AluSx SINE Alu 1 294 -18 502 211 11 0 chr6 84373218 84373308 -104906246 - MER3 DNA MER1_type -117 92 2 690 220 17 11 chr6 84374001 84374178 -104905376 - MER5B DNA MER1_type 0 178 1 247 281 24 40 chr6 84374183 84374338 -104905216 - MER5A DNA MER1_type -27 161 1 2151 112 0 0 chr6 84374424 84374710 -104904844 + AluSx SINE Alu 6 291 -21 24 32 0 0 chr6 84374710 84374741 -104904813 + AT_rich Low_complexity Low_complexity 1 31 0 444 195 65 110 chr6 84374942 84375025 -104904529 - Charlie7 DNA MER1_type 0 2612 2527 2197 112 7 0 chr6 84375025 84375311 -104904243 - AluSc SINE Alu -21 288 1 444 195 65 110 chr6 84375311 84375482 -104904072 - Charlie7 DNA MER1_type -85 2527 2372 2134 130 0 0 chr6 84375482 84375783 -104903771 - AluSx SINE Alu -11 301 1 444 195 65 110 chr6 84375783 84375835 -104903719 - Charlie7 DNA MER1_type -240 2372 2319 2159 113 0 3 chr6 84375908 84376249 -104903305 + AluSg SINE Alu 1 310 0 2184 111 7 0 chr6 84376272 84376560 -104902994 + AluSx SINE Alu 2 291 -21 2150 118 7 7 chr6 84376566 84376862 -104902692 + AluSx SINE Alu 1 296 -16 683 269 198 19 chr6 84376869 84377137 -104902417 - Charlie7 DNA MER1_type -2295 317 2 2232 100 43 0 chr6 84377315 84377614 -104901940 + AluSq SINE Alu 1 312 -1 21 0 0 0 chr6 84377736 84377757 -104901797 + AT_rich Low_complexity Low_complexity 1 21 0 988 159 48 31 chr6 84378238 84378465 -104901089 + L1M4 LINE L1 5173 5403 -743 903 158 0 0 chr6 84378465 84378598 -104900956 + AluSq/x SINE Alu 1 133 -180 2222 108 3 0 chr6 84378599 84378914 -104900640 + AluSp SINE Alu 1 316 0 1576 169 7 22 chr6 84378915 84379193 -104900361 + AluSx SINE Alu 26 299 -13 2219 125 3 0 chr6 84379689 84379993 -104899561 + AluSx SINE Alu 1 305 -7 810 131 15 44 chr6 84380364 84380501 -104899053 - AluJb SINE Alu -179 133 1 1434 165 22 33 chr6 84380548 84380890 -104898664 + Tigger1 DNA MER2_type 1 418 -2000 1762 133 34 20 chr6 84380890 84381184 -104898370 + AluSx SINE Alu 1 298 -14 1434 165 22 33 chr6 84381184 84381253 -104898301 + Tigger1 DNA MER2_type 418 486 -1932 1895 144 4 0 chr6 84381599 84381917 -104897637 - AluSx SINE Alu 0 322 4 1991 100 19 0 chr6 84382044 84382305 -104897249 - AluSq SINE Alu -47 266 1 1900 158 3 16 chr6 84382542 84382858 -104896696 - AluSx SINE Alu 0 312 1 2282 110 7 0 chr6 84382960 84383259 -104896295 + AluSx SINE Alu 1 301 -11 405 0 0 0 chr6 84383286 84383331 -104896223 + (TG)n Simple_repeat Simple_repeat 2 46 0 245 290 94 29 chr6 84383622 84383694 -104895860 + L1ME3A LINE L1 6016 6082 -88 2307 114 0 0 chr6 84383694 84384000 -104895554 + AluSg SINE Alu 1 306 -4 245 290 94 29 chr6 84384000 84384065 -104895489 + L1ME3A LINE L1 6082 6162 -8 4196 190 58 26 chr6 84384638 84385453 -104894101 - MER21B LTR ERV1 -11 852 12 228 143 0 24 chr6 84385465 84385507 -104894047 - Alu SINE Alu -176 126 86 920 187 9 80 chr6 84385507 84385594 -104893960 - AluJo SINE Alu -92 220 128 1795 171 7 3 chr6 84385594 84385898 -104893656 - AluJb SINE Alu -7 305 1 920 187 9 80 chr6 84385898 84386035 -104893519 - AluJo SINE Alu -184 128 12 2224 107 7 3 chr6 84386227 84386517 -104893037 + AluSg SINE Alu 3 293 -17 1725 163 46 11 chr6 84386833 84387116 -104892438 - AluJb SINE Alu -19 293 1 854 216 0 29 chr6 84387142 84387313 -104892241 + FRAM SINE Alu 1 161 -15 1722 121 68 21 chr6 84387427 84387707 -104891847 + AluSq SINE Alu 1 293 -20 1159 149 18 143 chr6 84387710 84388069 -104891485 + AluJo SINE Alu 2 318 0 282 116 47 0 chr6 84388112 84388155 -104891399 - MER3 DNA MER1_type -164 45 1 2112 115 7 0 chr6 84388307 84388595 -104890959 + AluSx SINE Alu 1 290 -22 1811 147 3 27 chr6 84388630 84388922 -104890632 - AluJo SINE Alu -25 287 3 22 0 0 0 chr6 84389518 84389540 -104890014 + AT_rich Low_complexity Low_complexity 1 22 0 2323 105 0 0 chr6 84389550 84389845 -104889709 + AluSq SINE Alu 1 295 -18 1113 163 70 18 chr6 84389847 84390074 -104889480 - L1MB3 LINE L1 -12 6171 5933 257 327 186 0 chr6 84390211 84390324 -104889230 + L2 LINE L2 3136 3269 -3 332 304 65 36 chr6 84390424 84390562 -104888992 - MIR SINE MIR -72 190 49 21 57 0 0 chr6 84390711 84390746 -104888808 + AT_rich Low_complexity Low_complexity 1 35 0 1555 175 4 18 chr6 84390879 84391153 -104888401 - AluJo SINE Alu -42 270 1 557 322 93 47 chr6 84391251 84391701 -104887853 - MLT1K LTR MaLR -8 580 110 2156 109 0 7 chr6 84391810 84392118 -104887436 + AluSx SINE Alu 1 306 0 1057 174 0 5 chr6 84392118 84392302 -104887252 + AluJb SINE Alu 125 307 -5 323 292 26 45 chr6 84392316 84392470 -104887084 + MER5A DNA MER1_type 1 151 -38 2160 104 24 13 chr6 84392478 84392776 -104886778 - AluSc SINE Alu -8 301 1 2249 101 3 0 chr6 84392798 84393094 -104886460 - AluSp SINE Alu -16 297 1 1208 174 36 22 chr6 84393130 84393354 -104886200 + AluJo SINE Alu 5 231 -81 2295 107 7 0 chr6 84393593 84393892 -104885662 + AluSx SINE Alu 1 301 -11 306 0 0 0 chr6 84393919 84393953 -104885601 + (TG)n Simple_repeat Simple_repeat 2 35 0 226 271 0 17 chr6 84394244 84394303 -104885251 + L1ME3A LINE L1 6016 6073 -97 2358 111 0 0 chr6 84394316 84394622 -104884932 + AluSg SINE Alu 1 306 -4 32 26 0 0 chr6 84394662 84394701 -104884853 + AT_rich Low_complexity Low_complexity 1 39 0 4169 191 58 26 chr6 84395255 84396070 -104883484 - MER21B LTR ERV1 -11 852 12 236 143 0 24 chr6 84396082 84396124 -104883430 - Alu SINE Alu -176 126 86 994 191 8 72 chr6 84396124 84396211 -104883343 - AluJo SINE Alu -92 220 129 1864 167 3 3 chr6 84396211 84396516 -104883038 - AluJb SINE Alu -7 305 1 994 191 8 72 chr6 84396516 84396663 -104882891 - AluJo SINE Alu -183 129 1 2268 108 7 0 chr6 84396840 84397128 -104882426 + AluSg SINE Alu 3 292 -18 1755 157 45 11 chr6 84397444 84397730 -104881824 - AluJb SINE Alu -16 296 1 854 216 0 29 chr6 84397756 84397927 -104881627 + FRAM SINE Alu 1 161 -15 1741 115 68 21 chr6 84398041 84398320 -104881234 + AluSq SINE Alu 1 292 -21 1157 149 18 143 chr6 84398323 84398658 -104880896 + AluJo SINE Alu 2 294 -8 196 42 0 0 chr6 84398658 84398682 -104880872 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 282 116 47 0 chr6 84398726 84398769 -104880785 - MER3 DNA MER1_type -164 45 1 2185 111 3 0 chr6 84398921 84399221 -104880333 + AluSx SINE Alu 1 290 -22 247 174 0 22 chr6 84399243 84399289 -104880265 - AluJo SINE Alu -11 291 247 1704 154 3 20 chr6 84399245 84399537 -104880017 - AluJo SINE Alu -23 289 3 22 0 0 0 chr6 84400134 84400156 -104879398 + AT_rich Low_complexity Low_complexity 1 22 0 2195 105 0 0 chr6 84400166 84400461 -104879093 + AluSq SINE Alu 1 295 -18 1128 166 72 0 chr6 84400463 84400686 -104878868 - L1MB3 LINE L1 -12 6171 5933 306 321 223 0 chr6 84400823 84400935 -104878619 + L2 LINE L2 3136 3272 0 385 324 60 39 chr6 84401034 84401219 -104878335 - MIR SINE MIR -62 146 6 21 57 0 0 chr6 84401324 84401359 -104878195 + AT_rich Low_complexity Low_complexity 1 35 0 1458 175 4 18 chr6 84401492 84401766 -104877788 - AluJo SINE Alu -42 270 1 588 318 93 47 chr6 84401864 84402314 -104877240 - MLT1K LTR MaLR -8 580 110 2298 96 0 0 chr6 84402423 84402724 -104876830 + AluSx SINE Alu 1 301 -11 1869 120 50 0 chr6 84402934 84403217 -104876337 + AluSq SINE Alu 1 297 -16 268 241 52 0 chr6 84403274 84403332 -104876222 + MIR SINE MIR 152 212 -50 438 336 101 27 chr6 84403435 84403733 -104875821 + L3 LINE CR1 262 581 -996 232 237 102 34 chr6 84403745 84403804 -104875750 - L2 LINE L2 -38 3234 3172 223 320 113 27 chr6 84403821 84403971 -104875583 + L3 LINE CR1 1412 1574 -3 1936 132 0 0 chr6 84404157 84404471 -104875083 + AluSx SINE Alu 1 314 0 2286 94 3 0 chr6 84404496 84404804 -104874750 - AluSp SINE Alu -4 309 1 342 0 0 0 chr6 84404831 84404869 -104874685 + (TG)n Simple_repeat Simple_repeat 2 39 0 774 172 0 0 chr6 84405356 84405478 -104874076 + FLAM_C SINE Alu 2 123 -10 21 0 0 0 chr6 84405484 84405505 -104874049 + AT_rich Low_complexity Low_complexity 1 21 0 209 211 89 56 chr6 84405505 84405595 -104873959 + MIR SINE MIR 136 228 -34 1395 152 33 56 chr6 84405736 84406038 -104873516 - AluJb SINE Alu -17 295 1 217 0 29 29 chr6 84406558 84406592 -104872962 + (TTTTTG)n Simple_repeat Simple_repeat 5 38 0 454 232 12 67 chr6 84406592 84406756 -104872798 + L1MC5 LINE L1 7292 7446 -515 2068 127 3 0 chr6 84406780 84407079 -104872475 + AluSq SINE Alu 1 300 -13 1450 92 209 32 chr6 84407108 84407357 -104872197 + AluSx SINE Alu 1 293 -9 546 250 150 14 chr6 84407362 84407582 -104871972 + L1ME4a LINE L1 5872 6121 0 2161 48 0 4 chr6 84407812 84408084 -104871470 - AluY SINE Alu -40 271 1 207 0 0 0 chr6 84408105 84408128 -104871426 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6316 56 12 52 chr6 84408130 84409555 -104869999 - SVA Other Other -520 1380 436 2410 150 43 127 chr6 84409577 84410410 -104869144 - SVA Other Other -520 866 104 422 129 0 0 chr6 84410414 84410484 -104869070 + Alu SINE Alu 241 310 -2 2058 100 14 0 chr6 84410888 84411179 -104868375 + AluSg SINE Alu 1 295 -15 934 154 24 0 chr6 84411606 84411775 -104867779 + FRAM SINE Alu 1 170 -6 846 139 7 14 chr6 84411806 84411950 -104867604 - AluSq SINE Alu -37 276 134 2123 84 32 0 chr6 84411987 84412271 -104867283 - AluSp SINE Alu -20 293 1 2133 108 3 0 chr6 84412336 84412633 -104866921 - AluSx SINE Alu -14 298 1 1618 157 21 7 chr6 84413151 84413478 -104866076 - AluJb SINE Alu 0 331 1 1934 96 14 7 chr6 84413481 84413793 -104865761 - AluY SINE Alu 0 314 1 2216 99 3 0 chr6 84413796 84414099 -104865455 - AluSq SINE Alu -9 304 1 270 0 0 0 chr6 84414100 84414130 -104865424 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2248 60 0 3 chr6 84414130 84414413 -104865141 - AluY SINE Alu -29 282 1 1741 194 68 38 chr6 84414839 84414882 -104864672 - L1ME3A LINE L1 -5 6165 6125 1779 153 0 22 chr6 84414882 84415006 -104864548 + AluJb SINE Alu 1 126 -186 372 94 0 0 chr6 84415006 84415059 -104864495 + (TA)n Simple_repeat Simple_repeat 2 54 0 1779 153 0 22 chr6 84415059 84415248 -104864306 + AluJb SINE Alu 126 307 -5 1741 194 68 38 chr6 84415248 84415678 -104863876 - L1ME3A LINE L1 -45 6125 5678 2238 103 0 3 chr6 84416635 84416945 -104862609 + AluSg SINE Alu 1 309 -1 828 139 16 0 chr6 84417041 84417170 -104862384 - FLAM_C SINE Alu -12 131 1 577 143 118 67 chr6 84417852 84417971 -104861583 - FLAM_A SINE Alu -7 126 2 4041 144 58 121 chr6 84418171 84418379 -104861175 + MER21A LTR ERV1 12 231 -700 2268 78 3 0 chr6 84418379 84418675 -104860879 + AluSg SINE Alu 1 297 -13 4041 144 58 121 chr6 84418675 84419427 -104860127 + MER21A LTR ERV1 231 912 -19 2247 68 10 10 chr6 84419427 84419736 -104859818 + AluY SINE Alu 1 309 -2 2175 78 7 7 chr6 84419747 84420053 -104859501 + AluSp SINE Alu 8 313 0 1922 93 4 4 chr6 84420197 84420467 -104859087 - AluSg SINE Alu -14 296 27 2528 40 3 0 chr6 84420541 84420842 -104858712 - AluY SINE Alu -8 303 2 1140 118 0 12 chr6 84421088 84421258 -104858296 + AluSx SINE Alu 1 168 -144 880 186 0 6 chr6 84421275 84421442 -104858112 + FRAM SINE Alu 1 166 0 1671 160 31 0 chr6 84421485 84421773 -104857781 - AluJb SINE Alu -15 297 1 1794 164 10 3 chr6 84421804 84422109 -104857445 + AluJb SINE Alu 1 307 -5 267 223 213 11 chr6 84422668 84422762 -104856792 - L2 LINE L2 -1 3271 3159 1447 147 68 51 chr6 84422797 84423089 -104856465 - AluSx SINE Alu -15 297 1 1560 178 0 16 chr6 84423283 84423587 -104855967 + AluJo SINE Alu 1 299 -13 2157 92 3 0 chr6 84423594 84423886 -104855668 - AluSq SINE Alu -20 293 1 429 246 8 71 chr6 84424133 84424259 -104855295 - L2 LINE L2 -3 3310 3193 935 191 16 0 chr6 84424598 84424787 -104854767 + AluJb SINE Alu 118 309 -3 2052 140 3 0 chr6 84425671 84425979 -104853575 + AluSx SINE Alu 1 309 -3 1995 112 0 30 chr6 84426058 84426233 -104853321 - AluSg1 SINE Alu -15 294 130 2480 58 0 3 chr6 84426233 84426545 -104853009 - AluY SINE Alu 0 311 1 1995 112 0 30 chr6 84426545 84426672 -104852882 - AluSg1 SINE Alu -179 130 1 584 161 85 77 chr6 84426738 84426868 -104852686 + FLAM_C SINE Alu 1 131 -2 182 156 22 0 chr6 84426874 84426919 -104852635 + A-rich Low_complexity Low_complexity 3 48 0 2311 90 0 0 chr6 84426919 84427230 -104852324 + AluSq SINE Alu 1 311 -2 398 314 61 56 chr6 84427235 84427306 -104852248 + L1ME LINE L1 5413 5482 -680 1784 101 20 37 chr6 84427306 84427604 -104851950 + AluSq SINE Alu 1 293 -20 398 314 61 56 chr6 84427604 84427924 -104851630 + L1ME LINE L1 5482 5806 -356 2116 109 3 0 chr6 84427961 84428265 -104851289 + AluSx SINE Alu 1 305 -7 447 194 194 10 chr6 84428277 84428375 -104851179 + FLAM_A SINE Alu 1 116 -17 1870 177 85 7 chr6 84428383 84428795 -104850759 - L1MB7 LINE L1 -58 6126 5683 2119 139 0 0 chr6 84428796 84429105 -104850449 - AluSx SINE Alu -1 311 3 240 217 0 0 chr6 84429166 84429212 -104850342 - MER66A LTR ERV1 -142 336 291 2319 132 23 2 chr6 84429218 84429611 -104849943 - L1MB7 LINE L1 -1183 4963 4563 300 53 0 0 chr6 84430046 84430084 -104849470 + (CA)n Simple_repeat Simple_repeat 2 39 0 180 77 0 0 chr6 84430761 84430787 -104848767 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 1977 125 7 3 chr6 84431508 84431811 -104847743 + AluSc SINE Alu 2 305 -4 768 183 36 96 chr6 84432170 84432286 -104847268 - MIR SINE MIR -6 256 157 2033 108 45 0 chr6 84432286 84432573 -104846981 - AluSx SINE Alu -12 300 1 768 183 36 96 chr6 84432573 84432675 -104846879 - MIR SINE MIR -105 157 51 251 176 0 81 chr6 84433419 84433461 -104846093 - MER33 DNA MER1_type -2261 324 289 2127 112 0 10 chr6 84433461 84433773 -104845781 - AluSx SINE Alu -3 309 1 251 176 0 81 chr6 84433773 84433804 -104845750 - MER33 DNA MER1_type -2296 289 257 1030 133 17 0 chr6 84433804 84433977 -104845577 + AluSg/x SINE Alu 119 294 -16 2199 114 0 0 chr6 84433979 84434278 -104845276 + AluSx SINE Alu 1 299 -13 8159 78 5 15 chr6 84434284 84435366 -104844188 - MER11C LTR ERVK 0 1071 1 687 218 0 8 chr6 84435393 84435526 -104844028 + FLAM_C SINE Alu 2 133 0 319 74 32 74 chr6 84435526 84435610 -104843944 - MER33 DNA MER1_type -2334 290 209 2321 78 10 3 chr6 84435627 84435935 -104843619 - AluY SINE Alu -1 310 1 1834 144 22 0 chr6 84435935 84436213 -104843341 - AluSx SINE Alu -28 284 1 21 0 0 0 chr6 84436227 84436248 -104843306 + AT_rich Low_complexity Low_complexity 1 21 0 767 180 8 0 chr6 84436251 84436379 -104843175 + FLAM_C SINE Alu 5 133 0 527 182 84 52 chr6 84436400 84436453 -104843101 - MER33 DNA MER1_type -2426 159 109 1765 100 22 87 chr6 84436453 84436774 -104842780 - AluSx SINE Alu -12 300 1 527 182 84 52 chr6 84436774 84436874 -104842680 - MER33 DNA MER1_type -2476 109 1 518 265 85 66 chr6 84436874 84437289 -104842265 + MLT1L LTR MaLR 163 608 -7 2125 122 0 3 chr6 84437377 84437681 -104841873 - AluSx SINE Alu -9 303 1 6061 112 208 118 chr6 84437834 84439390 -104840164 + pTR5 LTR ERV1 742 2438 0 319 318 178 22 chr6 84439995 84440188 -104839366 + MIR3 SINE MIR 2 208 -54 706 134 0 39 chr6 84440190 84440317 -104839237 - FLAM_C SINE Alu -5 138 17 2119 107 3 13 chr6 84441079 84441388 -104838166 + AluSq SINE Alu 5 310 -3 2220 88 3 13 chr6 84441995 84442301 -104837253 + AluSx SINE Alu 1 303 -9 2251 82 0 25 chr6 84442544 84442859 -104836695 - AluY SINE Alu -4 307 1 512 191 54 113 chr6 84442896 84442979 -104836575 + MER5A DNA MER1_type 1 71 -118 2053 88 53 0 chr6 84442979 84443264 -104836290 + AluSq SINE Alu 2 301 -12 512 191 54 113 chr6 84443264 84443348 -104836206 + MER5A DNA MER1_type 71 158 -31 1630 151 58 0 chr6 84444057 84444335 -104835219 + AluJb SINE Alu 1 294 -18 1838 129 63 0 chr6 84444816 84445103 -104834451 - AluSx SINE Alu -7 305 1 427 257 171 13 chr6 84445105 84445257 -104834297 - MER5A DNA MER1_type 0 189 14 681 178 39 0 chr6 84445273 84445402 -104834152 - MER58B DNA MER1_type 0 341 208 3563 103 115 22 chr6 84445408 84445586 -104833968 - MER41B LTR ERV1 0 635 475 1943 148 7 0 chr6 84445586 84445891 -104833663 - AluSq SINE Alu -6 307 1 3563 103 115 22 chr6 84445891 84446293 -104833261 - MER41B LTR ERV1 -160 475 1 183 398 61 0 chr6 84446295 84446393 -104833161 + MIR SINE MIR 44 147 -61 623 178 30 44 chr6 84446910 84447045 -104832509 - FLAM_C SINE Alu 0 133 1 1946 106 10 23 chr6 84447055 84447358 -104832196 - AluSx SINE Alu -11 301 3 2100 91 0 58 chr6 84447415 84447744 -104831810 - AluSg SINE Alu 0 310 1 1888 74 4 0 chr6 84447966 84448284 -104831270 + AluY SINE Alu 53 311 0 2193 74 7 0 chr6 84449106 84449391 -104830163 + AluSq SINE Alu 1 287 -26 24 0 0 0 chr6 84449396 84449420 -104830134 + AT_rich Low_complexity Low_complexity 1 24 0 761 254 0 0 chr6 84449458 84449623 -104829931 - FAM SINE Alu -10 165 1 2288 71 0 26 chr6 84449680 84449989 -104829565 - AluY SINE Alu -9 302 2 2196 103 3 3 chr6 84450390 84450700 -104828854 - AluSq SINE Alu -3 310 1 21 0 0 0 chr6 84450705 84450726 -104828828 + AT_rich Low_complexity Low_complexity 1 21 0 661 143 29 9 chr6 84450732 84450837 -104828717 + U6 snRNA snRNA 1 107 0 21 0 0 0 chr6 84450837 84450858 -104828696 + AT_rich Low_complexity Low_complexity 1 21 0 271 196 20 0 chr6 84450864 84450915 -104828639 + Alu SINE Alu 1 52 -250 308 287 85 11 chr6 84450961 84451055 -104828499 - MIR SINE MIR -111 151 51 929 115 0 0 chr6 84451159 84451289 -104828265 + AluSp SINE Alu 3 132 -181 1301 75 0 0 chr6 84451341 84451501 -104828053 + AluSp SINE Alu 130 289 -24 2061 111 3 29 chr6 84451724 84452040 -104827514 - AluSx SINE Alu -4 308 1 898 206 5 5 chr6 84452040 84452229 -104827325 - AluJo SINE Alu -4 308 120 385 257 20 10 chr6 84452519 84452620 -104826934 - MIR SINE MIR -37 225 124 1873 109 3 32 chr6 84452625 84452910 -104826644 + AluSq SINE Alu 1 277 -36 36 0 0 0 chr6 84452910 84452946 -104826608 + AT_rich Low_complexity Low_complexity 1 36 0 2024 99 7 0 chr6 84453054 84453336 -104826218 + AluSg SINE Alu 12 295 -15 181 280 175 49 chr6 84453526 84453669 -104825885 + MIR SINE MIR 20 180 -82 1907 133 0 3 chr6 84453756 84454076 -104825478 - AluSx SINE Alu 0 319 1 1814 136 7 3 chr6 84454103 84454397 -104825157 - AluJo SINE Alu -13 299 5 2022 123 0 19 chr6 84454598 84454908 -104824646 + AluSx SINE Alu 1 304 -8 1258 110 0 0 chr6 84455047 84455220 -104824334 - AluSp SINE Alu -21 292 120 480 169 0 0 chr6 84455220 84455297 -104824257 - AluSp/q SINE Alu -16 297 221 1038 96 0 0 chr6 84455300 84455435 -104824119 - AluSg1 SINE Alu -174 135 1 1961 114 0 40 chr6 84455444 84455769 -104823785 - AluSx SINE Alu 0 312 1 831 208 39 0 chr6 84455772 84455926 -104823628 + MER20 DNA MER1_type 60 219 0 2147 95 3 3 chr6 84456193 84456488 -104823066 + AluSg SINE Alu 12 306 -4 1883 112 30 30 chr6 84456527 84456823 -104822731 + AluSq SINE Alu 1 296 -17 863 155 0 0 chr6 84456942 84457071 -104822483 - FLAM_C SINE Alu -4 129 1 927 196 14 9 chr6 84457108 84457322 -104822232 - AluSc SINE Alu -14 295 81 2706 7 7 0 chr6 84457673 84457980 -104821574 - AluYa5 SINE Alu -2 309 1 783 178 0 0 chr6 84458056 84458174 -104821380 - FLAM_C SINE Alu -15 118 1 1770 141 3 3 chr6 84458248 84458532 -104821022 - AluJb SINE Alu -18 294 11 2101 112 3 3 chr6 84458710 84459006 -104820548 + AluSp SINE Alu 1 296 -17 487 127 114 0 chr6 84459038 84459171 -104820383 - AluSg/x SINE Alu 0 337 196 1026 76 8 0 chr6 84459200 84459332 -104820222 + AluSq/x SINE Alu 1 133 -179 217 329 0 0 chr6 84459551 84459633 -104819921 + C-rich Low_complexity Low_complexity 1 82 0 211 318 30 23 chr6 84459652 84459784 -104819770 + (CCCTG)n Simple_repeat Simple_repeat 2 134 0 * 458 339 0 0 chr6 84459721 84459901 -104819653 + C-rich Low_complexity Low_complexity 1 180 0 1809 189 16 19 chr6 84460133 84460499 -104819055 + MLT1A1 LTR MaLR 1 365 0 2119 109 27 0 chr6 84460664 84460958 -104818596 + AluSx SINE Alu 1 302 -10 1045 132 6 6 chr6 84460958 84461125 -104818429 + AluSp SINE Alu 135 301 -12 35 24 0 0 chr6 84461274 84461316 -104818238 + AT_rich Low_complexity Low_complexity 1 42 0 327 85 43 0 chr6 84461320 84461367 -104818187 - Alu SINE Alu -5 297 249 6193 71 15 43 chr6 84461541 84462544 -104817010 + SVA Other Other 430 1405 0 2238 48 10 7 chr6 84462565 84462857 -104816697 + AluY SINE Alu 1 293 -18 189 0 0 0 chr6 84462967 84462988 -104816566 + (TA)n Simple_repeat Simple_repeat 1 21 0 2342 62 10 13 chr6 84463054 84463359 -104816195 - AluY SINE Alu -7 304 1 287 162 126 72 chr6 84463484 84463595 -104815959 - L1MC4a LINE L1 -1840 5968 5852 883 168 0 13 chr6 84464460 84464635 -104814919 - AluSg/x SINE Alu 0 310 139 2050 116 24 0 chr6 84464642 84464936 -104814618 - AluSx SINE Alu -11 301 1 190 266 83 46 chr6 84465354 84465387 -104814167 + MIR SINE MIR 85 115 -147 2167 108 0 7 chr6 84465387 84465694 -104813860 - AluSg SINE Alu -5 305 1 190 266 83 46 chr6 84465694 84465769 -104813785 + MIR SINE MIR 115 197 -65 2128 115 7 0 chr6 84465838 84466143 -104813411 - AluSx SINE Alu -5 307 1 839 121 0 8 chr6 84466169 84466301 -104813253 + AluJo SINE Alu 3 133 -169 740 182 65 19 chr6 84466523 84466677 -104812877 + AluJo SINE Alu 137 297 -15 401 197 0 0 chr6 84466714 84466780 -104812774 - L2 LINE L2 0 3272 3207 598 316 17 23 chr6 84467226 84467400 -104812154 + MIR SINE MIR 20 192 -70 815 284 4 52 chr6 84467506 84467777 -104811777 + MIR SINE MIR 5 262 0 751 151 0 96 chr6 84467968 84468081 -104811473 + AluJo/FLAM SINE Alu 2 100 -202 1919 102 0 27 chr6 84468081 84468375 -104811179 - AluSc SINE Alu -18 291 6 751 151 0 96 chr6 84468375 84468407 -104811147 + AluJo/FLAM SINE Alu 100 133 -169 1679 185 50 28 chr6 84468413 84468770 -104810784 - MLT1A1 LTR MaLR 0 365 1 1132 105 6 0 chr6 84468780 84468942 -104810612 - AluSg/x SINE Alu -13 297 135 1601 178 7 7 chr6 84468947 84469240 -104810314 - AluJo SINE Alu -19 293 1 2071 75 3 59 chr6 84469251 84469589 -104809965 - AluSp SINE Alu 0 313 5 1195 214 4 8 chr6 84469615 84469867 -104809687 + AluJo SINE Alu 45 295 -17 1416 147 0 0 chr6 84469881 84470106 -104809448 + AluSg/x SINE Alu 84 308 -4 2001 119 0 23 chr6 84470184 84470487 -104809067 - AluSx SINE Alu -16 296 1 1976 115 0 10 chr6 84470925 84471236 -104808318 - AluSq SINE Alu 0 308 1 211 296 65 8 chr6 84471377 84471497 -104808057 - MIR3 SINE MIR -6 202 78 643 270 79 11 chr6 84471548 84471737 -104807817 + MIR SINE MIR 3 204 -58 266 256 85 37 chr6 84471774 84471856 -104807698 + L2 LINE L2 3227 3312 -1 22 35 0 0 chr6 84471895 84471924 -104807630 + AT_rich Low_complexity Low_complexity 1 29 0 326 203 142 61 chr6 84472038 84472186 -104807368 + L1ME1 LINE L1 1568 1727 -4813 1701 164 27 7 chr6 84472193 84472486 -104807068 + AluJo SINE Alu 5 303 -9 210 191 0 0 chr6 84472618 84472660 -104806894 + GA-rich Low_complexity Low_complexity 3 44 0 458 213 79 74 chr6 84472661 84472877 -104806677 + L1ME1 LINE L1 1704 1920 -4620 2125 175 42 11 chr6 84472881 84473315 -104806239 + L1ME1 LINE L1 5818 6264 -296 680 191 0 29 chr6 84473317 84473453 -104806101 + AluJo/FLAM SINE Alu 2 133 -179 2166 108 7 0 chr6 84473455 84473760 -104805794 + AluSx SINE Alu 1 307 -5 470 292 83 31 chr6 84473791 84473983 -104805571 + L2 LINE L2 3112 3313 0 315 342 231 8 chr6 84475682 84476033 -104803521 + L3 LINE CR1 430 858 -719 405 177 94 21 chr6 84476039 84476135 -104803419 + L1MD3 LINE L1 7742 7844 -151 780 155 9 0 chr6 84476137 84476253 -104803301 + FLAM_C SINE Alu 2 118 -25 712 116 47 31 chr6 84476277 84476406 -104803148 + L1MD3 LINE L1 7850 7980 -15 1858 124 18 0 chr6 84476414 84476782 -104802772 + AluSg SINE Alu 3 375 0 1728 100 21 0 chr6 84476805 84477044 -104802510 + AluSx SINE Alu 54 297 -15 251 267 86 52 chr6 84477071 84477187 -104802367 + L3 LINE CR1 1164 1283 -294 2075 124 10 0 chr6 84477310 84477616 -104801938 + AluSx SINE Alu 1 309 -3 1936 121 30 7 chr6 84477634 84477939 -104801615 + AluSx SINE Alu 1 312 0 287 151 164 41 chr6 84477984 84478057 -104801497 + MIR SINE MIR 102 183 -79 1284 186 32 35 chr6 84478113 84478424 -104801130 + AluJo SINE Alu 1 310 -2 1909 139 0 19 chr6 84478572 84478889 -104800665 + AluSx SINE Alu 1 311 -1 306 177 32 32 chr6 84478889 84478902 -104800652 + L1MC4 LINE L1 6643 6655 -1387 2104 110 0 0 chr6 84478902 84479192 -104800362 + AluSc SINE Alu 1 290 -19 306 177 32 32 chr6 84479192 84479240 -104800314 + L1MC4 LINE L1 6654 6704 -1338 558 275 143 31 chr6 84479325 84479612 -104799942 + L2 LINE L2 2991 3309 -4 891 220 127 8 chr6 84479694 84479953 -104799601 + L1ME1 LINE L1 5549 5838 -328 1391 115 15 0 chr6 84479953 84480153 -104799401 + AluSq SINE Alu 14 216 -97 729 177 20 20 chr6 84480154 84480301 -104799253 - AluSc SINE Alu -38 271 125 2151 74 11 3 chr6 84480315 84480599 -104798955 - AluY SINE Alu -24 287 2 843 187 58 6 chr6 84480600 84480771 -104798783 - AluSg/x SINE Alu -18 294 115 293 151 132 0 chr6 84480771 84480824 -104798730 - AluJ/FLAM SINE Alu -242 60 1 931 151 272 4 chr6 84480824 84481063 -104798491 - AluYb8 SINE Alu -3 315 13 805 187 212 0 chr6 84481571 84481769 -104797785 + AluJb SINE Alu 53 292 -20 1533 137 111 0 chr6 84482462 84482724 -104796830 + AluSp SINE Alu 1 291 -22 268 178 89 0 chr6 84482845 84482890 -104796664 + Alu SINE Alu 1 49 -253 196 186 169 17 chr6 84488521 84488580 -104790974 - L2 LINE L2 0 3313 3246 1941 102 33 10 chr6 84488729 84489032 -104790522 - AluSx SINE Alu 0 312 3 2027 105 10 3 chr6 84489276 84489572 -104789982 + AluSx SINE Alu 1 298 -14 1414 91 18 9 chr6 84490608 84490828 -104788726 + AluSx SINE Alu 1 222 -90 1873 112 92 75 chr6 84490972 84491158 -104788396 - THE1B LTR MaLR 0 364 183 2098 125 0 0 chr6 84491158 84491453 -104788101 - AluSq SINE Alu -18 295 1 1873 112 92 75 chr6 84491453 84491624 -104787930 - THE1B LTR MaLR -181 183 1 12026 82 15 3 chr6 84491624 84493185 -104786369 - THE1B-int LTR MaLR 0 1580 1 2628 102 5 24 chr6 84493185 84493556 -104785998 - THE1B LTR MaLR 0 364 1 1112 165 10 0 chr6 84493556 84493750 -104785804 - L1M2 LINE L1 -525 6726 6531 1794 176 0 3 chr6 84493765 84494071 -104785483 - AluJb SINE Alu -7 305 1 961 106 12 19 chr6 84494073 84494233 -104785321 - L1M2 LINE L1 -803 6448 6290 1035 176 42 32 chr6 84494246 84494462 -104785092 - AluJo SINE Alu -23 289 72 1789 119 79 4 chr6 84494471 84494749 -104784805 - AluSc SINE Alu -10 299 1 1316 160 40 18 chr6 84494751 84495026 -104784528 - L1M2 LINE L1 -815 6291 6011 1267 150 12 117 chr6 84495004 84495109 -104784445 - L1M2 LINE L1 -1830 5276 5162 * 1689 106 42 15 chr6 84495109 84495374 -104784180 - L1PB2 LINE L1 -3 6148 5877 1267 150 12 117 chr6 84495374 84495609 -104783945 - L1M2 LINE L1 -1944 5162 4972 1412 159 0 20 chr6 84495609 84495854 -104783700 - L1M2 LINE L1 -6790 240 1 791 203 80 47 chr6 84495857 84496133 -104783421 - L1MC5 LINE L1 -476 7485 7201 259 227 0 0 chr6 84496133 84496177 -104783377 + MER3 DNA MER1_type 47 90 -119 * 664 192 115 11 chr6 84496142 84496185 -104783369 - MER3 DNA MER1_type -8 201 164 216 0 0 0 chr6 84496185 84496209 -104783345 + (TTAAA)n Simple_repeat Simple_repeat 2 25 0 664 192 115 11 chr6 84496209 84496242 -104783312 - MER3 DNA MER1_type -45 164 136 2069 128 0 0 chr6 84496242 84496539 -104783015 - AluSx SINE Alu -15 297 1 664 192 115 11 chr6 84496539 84496643 -104782911 - MER3 DNA MER1_type -73 136 1 773 218 137 0 chr6 84496643 84496854 -104782700 - L1MC5 LINE L1 -755 7206 6967 223 172 17 17 chr6 84496902 84496960 -104782594 + CT-rich Low_complexity Low_complexity 1 58 0 333 100 0 0 chr6 84496994 84497044 -104782510 + (TCCCC)n Simple_repeat Simple_repeat 5 54 0 372 220 113 47 chr6 84497137 84497287 -104782267 + MLT1H LTR MaLR 1 160 -389 395 225 0 25 chr6 84497795 84497875 -104781679 + MER21B LTR ERV1 13 90 -773 319 239 15 0 chr6 84497979 84498046 -104781508 + MER21B LTR ERV1 19 86 -777 2359 226 133 32 chr6 84498049 84498310 -104781244 + MER21B LTR ERV1 43 276 -587 2032 134 3 3 chr6 84498310 84498617 -104780937 - AluJo SINE Alu -5 307 1 2359 226 133 32 chr6 84498617 84499099 -104780455 + MER21B LTR ERV1 276 861 -2 266 202 144 19 chr6 84499358 84499462 -104780092 - MER104 DNA Tc2 -60 120 4 331 276 32 41 chr6 84499790 84499913 -104779641 - HAL1 LINE L1 -760 1747 1626 2443 63 7 0 chr6 84499946 84500247 -104779307 - AluSp SINE Alu -10 303 1 408 258 45 56 chr6 84500247 84500515 -104779039 + L1ME4a LINE L1 5806 6070 -51 820 311 123 14 chr6 84500965 84501315 -104778239 + MLT2F LTR ERVL 200 587 -76 2044 131 100 81 chr6 84501347 84501767 -104777787 - MSTA LTR MaLR 0 428 1 273 253 26 125 chr6 84502027 84502163 -104777391 - L1ME4a LINE L1 -122 5999 5851 2933 94 3 0 chr6 84502163 84502526 -104777028 + THE1B LTR MaLR 1 364 0 273 253 26 125 chr6 84502526 84502645 -104776909 - L1ME4a LINE L1 -270 5851 5722 2622 138 43 17 chr6 84502645 84503066 -104776488 - MSTB1 LTR MaLR 0 432 1 273 253 26 125 chr6 84503066 84503106 -104776448 - L1ME4a LINE L1 -399 5722 5730 2036 144 0 0 chr6 84503106 84503398 -104776156 - AluSx SINE Alu -20 292 1 2153 127 3 13 chr6 84503420 84503736 -104775818 - AluSq SINE Alu 0 313 1 223 228 18 0 chr6 84503789 84503846 -104775708 - L2 LINE L2 0 3313 3256 252 86 0 0 chr6 84505235 84505270 -104774284 + (TG)n Simple_repeat Simple_repeat 1 35 0 33 25 0 0 chr6 84505847 84505887 -104773667 + GC_rich Low_complexity Low_complexity 1 40 0 183 278 56 79 chr6 84506615 84506741 -104772813 + MIR SINE MIR 64 186 -76 787 231 111 44 chr6 84507176 84507537 -104772017 - MLT1J2 LTR MaLR -9 437 31 838 156 0 7 chr6 84507897 84508032 -104771522 - AluJb SINE Alu -178 134 1 22 0 0 0 chr6 84508060 84508082 -104771472 + AT_rich Low_complexity Low_complexity 1 22 0 548 239 51 29 chr6 84508361 84508499 -104771055 + MIR SINE MIR 48 188 -74 1049 164 0 0 chr6 84508762 84508927 -104770627 + L1PA15 LINE L1 6001 6165 0 1806 147 0 21 chr6 84509634 84509919 -104769635 - AluJo SINE Alu -20 292 14 2433 91 0 3 chr6 84510338 84510646 -104768908 - AluSg SINE Alu -2 308 2 824 183 8 0 chr6 84511346 84511477 -104768077 + FLAM_C SINE Alu 1 132 -1 643 285 83 21 chr6 84512160 84512402 -104767152 + MIR SINE MIR 6 262 0 542 283 64 16 chr6 84512543 84512730 -104766824 - MIR SINE MIR -41 221 26 496 297 47 36 chr6 84512931 84513123 -104766431 - MIR3 SINE MIR -11 197 4 2226 114 17 0 chr6 84513449 84513748 -104765806 + AluSx SINE Alu 1 304 -8 281 300 221 30 chr6 84514678 84514904 -104764650 - L2 LINE L2 -957 2357 2175 1377 197 83 8 chr6 84514904 84515211 -104764343 + AluJo SINE Alu 1 327 0 281 300 221 30 chr6 84515211 84515348 -104764206 - L2 LINE L2 -1139 2175 1921 289 285 51 32 chr6 84516607 84516765 -104762789 + MER117 DNA MER1_type 1 161 -36 329 132 0 0 chr6 84517111 84517164 -104762390 + MIR SINE MIR 147 199 -63 1090 190 49 8 chr6 84517171 84517418 -104762136 + MER33 DNA MER1_type 1 257 -67 21 36 0 0 chr6 84517435 84517463 -104762091 + AT_rich Low_complexity Low_complexity 1 28 0 426 20 0 0 chr6 84517509 84517560 -104761994 + (TA)n Simple_repeat Simple_repeat 1 51 0 7795 41 0 1 chr6 84517560 84519159 -104760395 - L1PA5 LINE L1 -15 6139 4542 7863 28 0 0 chr6 84519159 84520067 -104759487 + L1PA5 LINE L1 3661 4568 -1578 198 319 0 0 chr6 84520101 84520148 -104759406 + L2 LINE L2 3210 3256 -16 1649 231 15 3 chr6 84520319 84520653 -104758901 - MER58B DNA MER1_type 0 341 4 2757 3 0 13 chr6 84521081 84521383 -104758171 - AluYa5 SINE Alu -13 298 1 1162 141 65 0 chr6 84521398 84521582 -104757972 - L1PB4 LINE L1 -3 6153 5958 1309 100 6 0 chr6 84521598 84521768 -104757786 + AluSg/x SINE Alu 123 293 -17 864 140 0 22 chr6 84522964 84523100 -104756454 - FLAM_C SINE Alu 0 133 1 1047 285 41 8 chr6 84523723 84524113 -104755441 + LTR16A LTR ERVL 24 426 -24 2232 107 0 3 chr6 84524523 84524822 -104754732 + AluSx SINE Alu 1 298 -14 1989 151 0 7 chr6 84524832 84525130 -104754424 + AluJo SINE Alu 6 301 -11 7647 125 5 4 chr6 84525175 84527160 -104752394 - L1MA2 LINE L1 0 6304 4316 216 0 0 0 chr6 84527160 84527184 -104752370 + (T)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chr6 84577371 84577408 -104702146 + AT_rich Low_complexity Low_complexity 1 37 0 2200 123 3 3 chr6 84577761 84578063 -104701491 - AluSx SINE Alu -8 304 3 371 268 89 17 chr6 84578749 84578928 -104700626 + L2 LINE L2 2867 3058 -255 40 0 0 0 chr6 84580023 84580063 -104699491 + AT_rich Low_complexity Low_complexity 1 40 0 2018 127 38 0 chr6 84580301 84580593 -104698961 + AluSx SINE Alu 1 303 -9 466 342 96 8 chr6 84581268 84581508 -104698046 - MIR SINE MIR 0 262 2 948 280 98 0 chr6 84581792 84582110 -104697444 + MER20B DNA MER1_type 1 349 -434 360 286 27 0 chr6 84582143 84582255 -104697299 + MLT1L LTR MaLR 154 268 -347 289 93 37 0 chr6 84582289 84582343 -104697211 + CT-rich Low_complexity Low_complexity 2 57 0 508 229 34 0 chr6 84582739 84582857 -104696697 + MSTB LTR MaLR 58 179 -247 303 344 65 54 chr6 84583340 84583526 -104696028 + MIR SINE MIR 1 188 -74 2188 120 7 3 chr6 84583553 84583861 -104695693 - AluSx SINE Alu -3 309 1 237 364 21 42 chr6 84583975 84584118 -104695436 + L2 LINE L2 2958 3097 -175 460 312 70 0 chr6 84584149 84584306 -104695248 - MER5A DNA MER1_type -14 175 8 1839 202 72 10 chr6 84584468 84584869 -104694685 - MSTB LTR MaLR 0 426 1 291 346 55 25 chr6 84586286 84586488 -104693066 - L2 LINE L2 -2897 417 210 552 91 0 0 chr6 84586988 84587076 -104692478 + (TG)n Simple_repeat Simple_repeat 2 89 0 204 40 0 0 chr6 84587722 84587747 -104691807 + (CA)n Simple_repeat Simple_repeat 2 26 0 234 211 0 24 chr6 84587804 84587927 -104691627 + (CA)n Simple_repeat Simple_repeat 2 121 0 434 123 54 0 chr6 84587959 84588089 -104691465 + (TA)n Simple_repeat Simple_repeat 1 137 0 3748 45 2 0 chr6 84588359 84588786 -104690768 - LTR5 LTR ERVK -541 428 1 4615 24 0 0 chr6 84588786 84589319 -104690235 + L1PA5 LINE L1 5622 6154 0 25 0 0 0 chr6 84589319 84589344 -104690210 + AT_rich Low_complexity Low_complexity 1 25 0 237 222 37 0 chr6 84589344 84589398 -104690156 + L3 LINE CR1 1518 1573 -4 184 342 40 0 chr6 84590724 84590800 -104688754 + L2 LINE L2 3232 3310 -3 382 208 387 0 chr6 84591334 84591502 -104688052 + MIR SINE MIR 17 249 -13 360 0 0 0 chr6 84591600 84591640 -104687914 + (TG)n Simple_repeat Simple_repeat 2 41 0 675 160 155 52 chr6 84592344 84592557 -104686997 + MER46A DNA MER2_type 2 236 0 224 313 0 21 chr6 84592575 84592671 -104686883 + (TA)n Simple_repeat Simple_repeat 2 95 0 205 74 74 25 chr6 84593003 84593084 -104686470 + (TA)n Simple_repeat Simple_repeat 1 85 0 459 267 134 8 chr6 84593344 84593606 -104685948 + L1M4 LINE L1 4178 4472 -1674 1638 185 126 19 chr6 84594275 84594648 -104684906 - MSTB LTR MaLR 0 426 14 286 273 0 0 chr6 84594652 84594740 -104684814 - L1MC4a LINE L1 -1787 6021 5934 1610 181 8 0 chr6 84594746 84595012 -104684542 - AluJb SINE Alu -13 299 32 2236 220 63 25 chr6 84595049 84595698 -104683856 - L1MC4a LINE L1 -1869 5939 5266 754 283 17 21 chr6 84596038 84596278 -104683276 + MIR SINE MIR 19 257 -5 318 50 0 0 chr6 84597139 84597179 -104682375 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 0 0 0 chr6 84597195 84597217 -104682337 + (T)n Simple_repeat Simple_repeat 1 22 0 2219 112 0 16 chr6 84597584 84597888 -104681666 - AluSq SINE Alu -14 299 1 207 0 0 0 chr6 84598578 84598601 -104680953 + (TG)n Simple_repeat Simple_repeat 2 24 0 542 245 143 43 chr6 84598744 84599116 -104680438 - MLT1I LTR MaLR 0 409 1 454 191 21 0 chr6 84599257 84599351 -104680203 - MER58C DNA MER1_type 0 215 120 216 273 0 18 chr6 84599351 84599406 -104680148 + CT-rich Low_complexity Low_complexity 3 56 0 21 0 0 0 chr6 84603880 84603901 -104675653 + AT_rich Low_complexity Low_complexity 1 21 0 309 272 130 13 chr6 84604416 84604589 -104674965 - L1ME LINE L1 -696 5470 5277 1462 148 53 30 chr6 84605131 84605434 -104674120 - L1MB3 LINE L1 -2 6181 5872 244 223 98 54 chr6 84605452 84605564 -104673990 - MER20B DNA MER1_type -606 177 61 345 295 108 63 chr6 84606880 84607195 -104672359 + L2 LINE L2 2984 3312 -1 2107 103 0 7 chr6 84607283 84607556 -104671998 + AluSx SINE Alu 27 297 -15 1493 87 5 0 chr6 84607912 84608120 -104671434 + L1PA4 LINE L1 5944 6152 -3 1807 161 17 0 chr6 84608807 84609099 -104670455 + AluJb SINE Alu 1 297 -15 21 36 0 0 chr6 84609158 84609186 -104670368 + AT_rich Low_complexity Low_complexity 1 28 0 2088 69 10 46 chr6 84609389 84609692 -104669862 + AluY SINE Alu 1 292 -19 241 296 49 37 chr6 84609730 84609811 -104669743 + MIR3 SINE MIR 3 75 -133 549 0 0 0 chr6 84610277 84610338 -104669216 + (TC)n Simple_repeat Simple_repeat 2 62 0 282 95 0 0 chr6 84610337 84610379 -104669175 + (TG)n Simple_repeat Simple_repeat 1 42 0 * 289 294 117 42 chr6 84611533 84612434 -104667120 - L1M4 LINE L1 -2666 3480 2513 5410 165 24 5 chr6 84612592 84614133 -104665421 - L1MA6 LINE L1 -4 7715 6147 1711 186 131 8 chr6 84614138 84614519 -104665035 + MSTA LTR MaLR 1 428 0 8705 136 18 51 chr6 84614547 84616162 -104663392 + MSTA-int LTR MaLR 19 1580 0 1805 158 152 8 chr6 84616162 84616536 -104663018 + MSTA LTR MaLR 1 428 0 4392 154 14 9 chr6 84616536 84617393 -104662161 - L1MA6 LINE L1 -1419 6146 5286 3068 200 23 19 chr6 84617395 84617686 -104661868 - L1MA6 LINE L1 -3240 4325 4037 2018 117 0 60 chr6 84617686 84617986 -104661568 + AluSq SINE Alu 1 283 -30 432 0 0 0 chr6 84617986 84618034 -104661520 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 2018 117 0 60 chr6 84618034 84618049 -104661505 + AluSq SINE Alu 283 297 -16 3068 200 23 19 chr6 84618049 84618734 -104660820 - L1MA6 LINE L1 -3528 4037 3350 365 299 78 5 chr6 84618747 84618951 -104660603 - HAL1 LINE L1 -845 1662 1444 740 182 133 0 chr6 84619749 84619906 -104659648 - MER5A DNA MER1_type -5 184 4 432 333 29 23 chr6 84619968 84620142 -104659412 + MER5B DNA MER1_type 3 177 -1 854 166 0 72 chr6 84620254 84620418 -104659136 - L1MA7 LINE L1 -10 6281 6107 2377 57 0 23 chr6 84620418 84620718 -104658836 - AluY SINE Alu -18 293 1 1765 124 98 4 chr6 84620718 84620993 -104658561 - AluSg SINE Alu -9 301 1 854 166 0 72 chr6 84620993 84621050 -104658504 - L1MA7 LINE L1 -182 6109 6075 1993 152 0 3 chr6 84621058 84621354 -104658200 - AluSx SINE Alu -17 295 1 2275 153 113 27 chr6 84621398 84621875 -104657679 - MLT2B1 LTR ERVL -2 518 1 717 97 0 0 chr6 84622078 84622181 -104657373 + (TA)n Simple_repeat Simple_repeat 2 104 0 571 180 0 101 chr6 84622182 84622321 -104657233 - FLAM_A SINE Alu -8 125 1 246 128 0 0 chr6 84622414 84622453 -104657101 + (CA)n Simple_repeat Simple_repeat 2 40 0 27 29 0 0 chr6 84623288 84623322 -104656232 + AT_rich Low_complexity Low_complexity 1 34 0 218 394 78 28 chr6 84624066 84624208 -104655346 - L2 LINE L2 0 3272 3124 672 270 95 18 chr6 84624369 84624591 -104654963 - MIR SINE MIR 0 262 24 200 370 103 7 chr6 84624668 84624814 -104654740 + MIR SINE MIR 41 200 -62 649 178 39 16 chr6 84625089 84625218 -104654336 - MIR SINE MIR -43 219 88 24 0 0 0 chr6 84625886 84625910 -104653644 + AT_rich Low_complexity Low_complexity 1 24 0 427 268 124 13 chr6 84626680 84626833 -104652721 + MIR SINE MIR 23 192 -70 278 286 133 0 chr6 84626833 84626931 -104652623 + MIR SINE MIR 148 258 -4 787 257 60 5 chr6 84627453 84627662 -104651892 - MIR SINE MIR -38 224 4 21 71 0 0 chr6 84628320 84628362 -104651192 + AT_rich Low_complexity Low_complexity 1 42 0 210 191 0 0 chr6 84630195 84630237 -104649317 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr6 84630812 84630841 -104648713 + AT_rich Low_complexity Low_complexity 1 29 0 405 273 50 8 chr6 84632380 84632501 -104647053 - MIR SINE MIR 0 262 137 556 125 0 0 chr6 84632501 84632581 -104646973 - AluJ/FLAM SINE Alu -228 84 5 465 261 21 63 chr6 84632609 84632751 -104646803 - L2 LINE L2 0 3272 3137 21 0 0 0 chr6 84633723 84633744 -104645810 + AT_rich Low_complexity Low_complexity 1 21 0 1590 184 0 11 chr6 84634903 84635170 -104644384 - AluJo SINE Alu -48 264 1 373 277 99 35 chr6 84636020 84636222 -104643332 - LTR16A1 LTR ERVL -217 240 26 411 342 13 7 chr6 84636246 84636401 -104643153 + MIR SINE MIR 100 255 -7 2998 51 8 0 chr6 84636980 84637352 -104642202 + L1PA5 LINE L1 5775 6149 -5 3295 146 4 2 chr6 84637363 84637913 -104641641 + L1PA16 LINE L1 5599 6149 -17 21 71 0 0 chr6 84638772 84638814 -104640740 + AT_rich Low_complexity Low_complexity 1 42 0 183 42 0 0 chr6 84640028 84640052 -104639502 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 185 208 0 19 chr6 84640739 84640792 -104638762 + CT-rich Low_complexity Low_complexity 4 55 0 22 0 0 0 chr6 84642026 84642048 -104637506 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 84642218 84642246 -104637308 + AT_rich Low_complexity Low_complexity 1 28 0 1041 216 29 0 chr6 84643931 84644139 -104635415 + MER20 DNA MER1_type 5 218 -1 399 329 48 24 chr6 84644350 84644517 -104635037 - MER5A DNA MER1_type -2 187 17 783 237 136 63 chr6 84644758 84645184 -104634370 + MLT1J LTR MaLR 1 457 -54 1975 221 124 19 chr6 84645190 84645724 -104633830 + MLT1E LTR MaLR 2 591 -2 186 103 0 0 chr6 84646205 84646234 -104633320 + (TC)n Simple_repeat Simple_repeat 2 30 0 258 276 0 13 chr6 84646316 84646392 -104633162 + MIR SINE MIR 6 80 -182 194 262 0 0 chr6 84646848 84646890 -104632664 + MIR SINE MIR 217 258 -4 330 316 364 2 chr6 84647675 84648131 -104631423 + L3 LINE CR1 849 1469 -108 2393 151 25 32 chr6 84648243 84648713 -104630841 + MLT1C LTR MaLR 1 467 0 220 184 0 0 chr6 84648726 84648764 -104630790 - MIR SINE MIR -83 125 88 562 49 24 0 chr6 84649398 84649480 -104630074 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 210 346 77 13 chr6 84649797 84649875 -104629679 + L2 LINE L2 3168 3250 -22 202 318 0 0 chr6 84650103 84650169 -104629385 + GA-rich Low_complexity Low_complexity 1 66 0 21 0 0 0 chr6 84650365 84650386 -104629168 + AT_rich Low_complexity Low_complexity 1 21 0 33838 34 18 1 chr6 84650386 84656400 -104623154 - L1PA2 LINE L1 0 6155 13 315 323 107 27 chr6 84656604 84656904 -104622650 + L2 LINE L2 1698 2021 -1293 6311 101 13 1 chr6 84656916 84657891 -104621663 - L1MA2 LINE L1 0 7723 6737 2304 136 34 9 chr6 84657897 84658429 -104621125 - L1MA2 LINE L1 -876 6689 6016 2248 151 21 9 chr6 84658425 84658855 -104620699 - L1MA2 LINE L1 -1823 5742 5308 * 2436 92 26 6 chr6 84658856 84659204 -104620350 + THE1A LTR MaLR 1 355 0 9024 113 41 22 chr6 84659205 84660894 -104618660 + THE1A-int LTR MaLR 2 1651 0 2461 80 56 3 chr6 84660894 84661231 -104618323 + THE1A LTR MaLR 1 355 0 7081 182 18 22 chr6 84661231 84662263 -104617291 - L1MA2 LINE L1 -2254 5311 4277 7405 37 5 0 chr6 84662263 84663442 -104616112 + L1PA3 LINE L1 4973 6155 0 7081 182 18 22 chr6 84663442 84665317 -104614237 - L1MA2 LINE L1 -3288 4277 2418 942 137 11 11 chr6 84665333 84665508 -104614046 - LTR7 LTR ERV1 -38 412 238 7134 59 11 13 chr6 84665571 84667151 -104612403 - SVA Other Other -760 1381 1 7717 153 37 5 chr6 84667159 84668440 -104611114 - L1MA2 LINE L1 -5139 2426 1105 579 167 42 17 chr6 84668444 84668564 -104610990 - L1MA2 LINE L1 -7431 134 12 237 317 0 0 chr6 84668660 84668742 -104610812 - L2 LINE L2 -772 2542 2461 959 255 76 56 chr6 84669136 84669689 -104609865 - L1MD2 LINE L1 -4 6355 5792 308 261 78 43 chr6 84672070 84672185 -104607369 - MIR SINE MIR -68 140 22 201 39 0 0 chr6 84672489 84672515 -104607039 + (TG)n Simple_repeat Simple_repeat 2 27 0 568 304 117 9 chr6 84672919 84673149 -104606405 - MIR SINE MIR -6 256 2 535 289 98 21 chr6 84673398 84673633 -104605921 - MIR SINE MIR -2 260 8 4607 183 37 33 chr6 84675100 84676679 -104602875 - L1MB3 LINE L1 -4 6179 4603 1889 160 3 0 chr6 84676679 84676961 -104602593 - AluJo SINE Alu -19 293 11 4607 183 37 33 chr6 84676961 84676976 -104602578 - L1MB3 LINE L1 -1580 4603 4590 246 153 0 0 chr6 84677151 84677210 -104602344 + (CA)n Simple_repeat Simple_repeat 2 60 0 2160 40 0 135 chr6 84678010 84678358 -104601196 + AluY SINE Alu 1 301 0 409 76 114 13 chr6 84678798 84678877 -104600677 + L1PA11 LINE L1 6087 6173 -1 194 430 59 7 chr6 84681068 84681203 -104598351 - L2 LINE L2 -35 3237 3096 2365 171 18 11 chr6 84681544 84681982 -104597572 + MSTB2 LTR MaLR 17 457 0 22 35 0 0 chr6 84682066 84682095 -104597459 + AT_rich Low_complexity Low_complexity 1 29 0 184 292 90 11 chr6 84682449 84682538 -104597016 - L2 LINE L2 -525 2789 2694 227 175 25 0 chr6 84682673 84682713 -104596841 + CT-rich Low_complexity Low_complexity 2 42 0 892 172 4 82 chr6 84682754 84682986 -104596568 + MER20 DNA MER1_type 6 219 0 593 211 102 22 chr6 84683564 84684769 -104594785 - L1MC4 LINE L1 -1 8041 6690 1275 179 54 4 chr6 84684793 84685073 -104594481 - L1MB2 LINE L1 -4 6167 5874 406 248 128 7 chr6 84686128 84686269 -104593285 - L3 LINE CR1 -187 1390 1233 315 148 0 13 chr6 84686669 84686742 -104592812 + Alu SINE Alu 239 294 -8 2155 71 0 4 chr6 84686907 84687174 -104592380 + AluY SINE Alu 1 266 -45 338 323 40 0 chr6 84687404 84687528 -104592026 - MER20B DNA MER1_type -611 172 44 632 274 44 10 chr6 84687598 84688023 -104591531 + MLT1L LTR MaLR 148 611 -4 359 186 93 0 chr6 84688645 84688731 -104590823 - L1MC4 LINE L1 -1336 6706 6613 3055 81 0 0 chr6 84689243 84689652 -104589902 - L1PA13 LINE L1 -19 6144 5736 23 33 0 0 chr6 84691177 84691207 -104588347 + AT_rich Low_complexity Low_complexity 1 30 0 920 156 0 0 chr6 84691224 84691365 -104588189 - AluJb SINE Alu -171 141 1 254 306 117 0 chr6 84691867 84691978 -104587576 - L2 LINE L2 -1061 2253 2130 2506 155 48 54 chr6 84692054 84692571 -104586983 - MER67D LTR ERV1 0 514 1 2427 76 0 10 chr6 84692638 84692942 -104586612 + AluSq SINE Alu 1 301 -12 1263 125 26 30 chr6 84693987 84694219 -104585335 + L1MA7 LINE L1 6036 6266 -25 2571 62 0 3 chr6 84694401 84694708 -104584846 + AluY SINE Alu 2 307 -4 183 129 0 0 chr6 84695262 84695293 -104584261 + (TG)n Simple_repeat Simple_repeat 2 32 0 223 192 27 0 chr6 84695344 84695417 -104584137 + (TA)n Simple_repeat Simple_repeat 1 75 0 296 224 60 45 chr6 84695426 84695627 -104583927 - L1MEd LINE L1 -3792 2337 2134 679 275 114 33 chr6 84695937 84696333 -104583221 - L1MEd LINE L1 -4879 1240 813 528 283 42 55 chr6 84697338 84697356 -104582198 - L1MA9 LINE L1 -38 6274 6257 231 114 0 0 chr6 84697356 84697391 -104582163 + (TA)n Simple_repeat Simple_repeat 1 35 0 528 283 42 55 chr6 84697391 84697680 -104581874 - L1MA9 LINE L1 -55 6257 5971 183 80 0 0 chr6 84697680 84697705 -104581849 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 6955 140 31 20 chr6 84697708 84698424 -104581130 - L1PA13 LINE L1 -19 6144 5437 2121 117 3 7 chr6 84698424 84698722 -104580832 - AluSg SINE Alu -7 303 7 2168 123 13 0 chr6 84698730 84699030 -104580524 - AluSx SINE Alu -6 306 3 6955 140 31 20 chr6 84699030 84699161 -104580393 - L1PA13 LINE L1 -732 5431 5303 1766 109 113 11 chr6 84699161 84699436 -104580118 - AluSp SINE Alu -10 303 1 6955 140 31 20 chr6 84699436 84700660 -104578894 - L1PA13 LINE L1 -860 5303 4076 2932 151 31 24 chr6 84701084 84701427 -104578127 - L1MB4 LINE L1 -1 6179 5829 2412 77 0 3 chr6 84701427 84701725 -104577829 - AluSg SINE Alu -13 297 1 2932 151 31 24 chr6 84701725 84701969 -104577585 - L1MB4 LINE L1 -351 5829 5588 432 221 38 0 chr6 84702080 84702211 -104577343 - L1MB4 LINE L1 -672 5449 5314 194 245 61 0 chr6 84702465 84702514 -104577040 - L3 LINE CR1 -846 731 680 22 35 0 0 chr6 84702718 84702747 -104576807 + AT_rich Low_complexity Low_complexity 1 29 0 184 214 34 120 chr6 84702955 84703072 -104576482 - MIR3 SINE MIR -96 112 6 776 275 123 40 chr6 84704048 84704400 -104575154 + MER57B LTR ERV1 22 408 -26 1352 181 16 62 chr6 84704400 84704704 -104574850 + AluJo SINE Alu 3 292 -20 776 275 123 40 chr6 84704704 84704726 -104574828 + MER57B LTR ERV1 408 427 -7 318 248 85 50 chr6 84705160 84705301 -104574253 - L1ME4a LINE L1 -24 6097 5952 453 303 78 42 chr6 84705769 84706053 -104573501 + MLT1L LTR MaLR 214 611 -4 422 233 142 17 chr6 84707211 84707331 -104572223 + MLT1C LTR MaLR 1 135 -519 12690 208 33 21 chr6 84707353 84710052 -104569502 + L1M2 LINE L1 2 2734 -4115 2275 201 30 27 chr6 84710052 84710654 -104568900 + pTR5 LTR ERV1 743 1346 -1092 * 13661 103 69 12 chr6 84710651 84713302 -104566252 + HERV9 LTR ERV1 17 2606 0 * 20762 80 4 8 chr6 84713302 84716009 -104563545 + HERV9 LTR ERV1 1990 4684 -3715 6696 123 10 9 chr6 84716008 84717487 -104562067 + HERV9 LTR ERV1 504 8395 -4 * 5081 111 86 48 chr6 84717493 84718285 -104561269 + LTR12 LTR ERV1 5 826 0 7454 205 42 22 chr6 84718285 84718620 -104560934 + L1M2 LINE L1 2731 3058 -3790 2546 140 98 24 chr6 84718620 84719078 -104560476 - LTR22B LTR ERVK 0 492 1 7454 205 42 22 chr6 84719078 84720682 -104558872 + L1M2 LINE L1 3058 4712 -2136 799 253 27 35 chr6 84720682 84720911 -104558643 + MLT1C LTR MaLR 192 314 -51 31 0 0 0 chr6 84721344 84721375 -104558179 + AT_rich Low_complexity Low_complexity 1 31 0 7289 54 39 5 chr6 84721375 84722294 -104557260 - SVA Other Other -7 1379 430 2179 137 0 0 chr6 84722530 84722836 -104556718 - AluSq SINE Alu -7 306 1 231 146 0 0 chr6 84722849 84722890 -104556664 + (TCC)n Simple_repeat Simple_repeat 2 42 0 1770 161 15 29 chr6 84722898 84723239 -104556315 - L1 LINE L1 -1112 5034 4699 7150 72 3 0 chr6 84723239 84724368 -104555186 - L1PA7 LINE L1 0 6154 5011 44559 44 1 2 chr6 84724582 84730741 -104548813 + L1PA3 LINE L1 1 6155 0 26 0 0 0 chr6 84730741 84730767 -104548787 + AT_rich Low_complexity Low_complexity 1 26 0 252 319 55 11 chr6 84730767 84730858 -104548696 - MIR3 SINE MIR -109 99 5 27 49 0 0 chr6 84730868 84730909 -104548645 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr6 84730925 84730954 -104548600 + AT_rich Low_complexity Low_complexity 1 29 0 190 200 17 67 chr6 84731809 84731869 -104547685 - MIR3 SINE MIR -48 160 104 1802 143 3 21 chr6 84732056 84732342 -104547212 - AluSx SINE Alu -31 281 1 5321 71 17 13 chr6 84732360 84733060 -104546494 - SVA Other Other 0 1386 684 2255 95 0 55 chr6 84733175 84733502 -104546052 - AluSc SINE Alu 0 309 1 602 219 38 12 chr6 84733586 84733746 -104545808 - LTR33A LTR ERVL -1 522 359 4386 265 29 19 chr6 84733934 84735392 -104544162 + L1P LINE L1 999 2470 -3676 4173 179 68 81 chr6 84735388 84736376 -104543178 - L1M2a LINE L1 -6190 978 4 * 368 298 118 17 chr6 84736552 84736790 -104542764 + MIR SINE MIR 1 262 0 23 54 0 0 chr6 84737189 84737226 -104542328 + AT_rich Low_complexity Low_complexity 1 37 0 642 198 0 40 chr6 84737356 84737533 -104542021 - L1 LINE L1 -825 5321 5152 1182 111 70 0 chr6 84737716 84737888 -104541666 - AluSg/x SINE Alu -16 296 113 249 241 0 17 chr6 84738342 84738400 -104541154 + GA-rich Low_complexity Low_complexity 4 60 0 295 223 106 0 chr6 84738748 84738842 -104540712 - MLT1L LTR MaLR -43 572 469 406 221 139 63 chr6 84738911 84739069 -104540485 - MLT1L LTR MaLR -267 348 179 464 297 123 55 chr6 84739365 84739870 -104539684 + L1MC/D LINE L1 2499 3037 -3109 22 0 0 0 chr6 84739922 84739944 -104539610 + AT_rich Low_complexity Low_complexity 1 22 0 2326 69 38 0 chr6 84739944 84740233 -104539321 + AluSc SINE Alu 1 300 -9 518 331 94 29 chr6 84740528 84740636 -104538918 + L1MC/D LINE L1 5291 5391 -2417 2391 68 0 0 chr6 84740636 84740929 -104538625 + AluY SINE Alu 5 297 -14 518 331 94 29 chr6 84740929 84741161 -104538393 + L1MC/D LINE L1 5391 5653 -2155 312 196 0 18 chr6 84741216 84741272 -104538282 - L1MD3 LINE L1 -1273 6722 6668 3126 42 3 0 chr6 84741381 84741739 -104537815 - L1PA4 LINE L1 -4 6151 5793 681 295 110 9 chr6 84742142 84742488 -104537066 + HsTC2 DNA Tc2 511 891 -1007 639 247 112 52 chr6 84742609 84742876 -104536678 - MLT1J LTR MaLR 0 511 229 852 295 49 42 chr6 84742999 84743429 -104536125 - LTR16A LTR ERVL 0 450 18 1428 257 45 11 chr6 84744039 84744417 -104535137 - L1MC4 LINE L1 -409 7633 7243 1670 210 53 32 chr6 84744426 84744901 -104534653 - L1MC4 LINE L1 -809 6999 6500 2720 128 10 13 chr6 84745326 84745716 -104533838 + MLT1B LTR MaLR 2 390 0 650 291 142 47 chr6 84745723 84746280 -104533274 - L1M4 LINE L1 -1121 5727 5118 334 312 21 0 chr6 84746527 84746620 -104532934 - MIR SINE MIR -149 113 19 294 290 45 95 chr6 84747975 84748175 -104531379 + MIR3 SINE MIR 8 197 -11 2074 326 53 48 chr6 84748181 84749395 -104530159 - ERVL LTR ERVL -3768 1996 776 501 17 0 0 chr6 84750010 84750068 -104529486 + (CA)n Simple_repeat Simple_repeat 2 59 0 21 0 0 0 chr6 84750766 84750787 -104528767 + AT_rich Low_complexity Low_complexity 1 21 0 2089 145 23 11 chr6 84750787 84751139 -104528415 - L1MA4A LINE L1 -11 6292 5937 5078 159 16 9 chr6 84751141 84752148 -104527406 - L1MA4A LINE L1 -202 6101 5079 4712 184 36 14 chr6 84752197 84753353 -104526201 - L1M4 LINE L1 -3741 3107 1928 1619 89 0 0 chr6 84953353 84953555 -104325999 + AluSq SINE Alu 59 260 -53 689 100 0 0 chr6 84953555 84953655 -104325899 + AluSg/x SINE Alu 211 310 -2 220 296 68 0 chr6 84954575 84954663 -104324891 + MER91C DNA MER1_type 47 140 0 1165 246 68 77 chr6 84955492 84955882 -104323672 - HAL1 LINE L1 0 2507 2123 1561 173 25 28 chr6 84955882 84956200 -104323354 + AluJb SINE Alu 1 317 0 1165 246 68 77 chr6 84956200 84956495 -104323059 - HAL1 LINE L1 -384 2123 1827 301 108 15 31 chr6 84956547 84956612 -104322942 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 333 68 0 0 chr6 84956612 84956656 -104322898 + (TC)n Simple_repeat Simple_repeat 2 45 0 328 343 203 10 chr6 84956679 84956886 -104322668 - HAL1 LINE L1 -1843 664 418 280 349 167 29 chr6 84956896 84957522 -104322032 + L2 LINE L2 2004 2781 -533 554 14 0 28 chr6 84957522 84957594 -104321960 + (CATAT)n Simple_repeat Simple_repeat 4 73 0 280 349 167 29 chr6 84957594 84957823 -104321731 + L2 LINE L2 2781 2977 -337 198 301 0 0 chr6 84958497 84958570 -104320984 + L3b LINE CR1 1354 1426 -157 * 237 349 70 0 chr6 84958568 84958654 -104320900 + MIR SINE MIR 30 121 -87 196 204 0 45 chr6 84958850 84958894 -104320660 - MIR3 SINE MIR -7 201 160 33 0 0 0 chr6 84961357 84961390 -104318164 + AT_rich Low_complexity Low_complexity 1 33 0 234 239 0 0 chr6 84961425 84961471 -104318083 - MLT1F LTR MaLR -15 527 482 2101 120 0 3 chr6 84961471 84961763 -104317791 - AluSx SINE Alu -21 291 1 296 228 103 44 chr6 84963330 84963466 -104316088 + L2 LINE L2 3170 3313 0 23 0 0 0 chr6 84963530 84963553 -104316001 + AT_rich Low_complexity Low_complexity 1 23 0 33 25 0 0 chr6 84963594 84963634 -104315920 + AT_rich Low_complexity Low_complexity 1 40 0 1934 59 4 0 chr6 84963640 84963922 -104315632 + AluY SINE Alu 41 323 0 378 0 0 0 chr6 84964014 84964056 -104315498 + (CA)n Simple_repeat Simple_repeat 1 42 0 1726 147 13 52 chr6 84965395 84965701 -104313853 + AluJo SINE Alu 3 296 -16 30 45 0 0 chr6 84966305 84966349 -104313205 + AT_rich Low_complexity Low_complexity 1 44 0 192 306 20 0 chr6 84969979 84970028 -104309526 + L2 LINE L2 3127 3176 -96 530 298 55 93 chr6 84970037 84970326 -104309228 - L2 LINE L2 -9 3263 2986 2103 120 7 0 chr6 84970575 84970875 -104308679 - AluY SINE Alu -9 302 1 2480 90 0 0 chr6 84971121 84971433 -104308121 + AluSx SINE Alu 1 312 0 1572 139 81 4 chr6 84971727 84971986 -104307568 + AluSx SINE Alu 18 296 -16 2425 57 10 0 chr6 84974122 84974419 -104305135 - AluSq SINE Alu -13 300 1 266 214 68 17 chr6 84974597 84974714 -104304840 - L1ME4a LINE L1 -11 6110 5988 212 215 31 0 chr6 84975482 84975547 -104304007 + C-rich Low_complexity Low_complexity 1 67 0 255 175 0 0 chr6 84975620 84975677 -104303877 + (CGG)n Simple_repeat Simple_repeat 3 59 0 252 59 0 0 chr6 84976707 84976741 -104302813 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 261 0 0 0 chr6 84977061 84977090 -104302464 + (CA)n Simple_repeat Simple_repeat 2 30 0 447 267 40 43 chr6 84977451 84977657 -104301897 + MIR SINE MIR 3 217 -45 404 352 88 11 chr6 84978114 84978296 -104301258 + MIR3 SINE MIR 4 199 -9 23 0 0 0 chr6 84978986 84979009 -104300545 + AT_rich Low_complexity Low_complexity 1 23 0 1536 142 70 38 chr6 84979747 84980092 -104299462 + MER58D DNA MER1_type 31 386 0 428 316 137 42 chr6 84981807 84982120 -104297434 - MLT1J LTR MaLR -168 343 1 188 247 224 0 chr6 84982373 84982458 -104297096 + L2 LINE L2 1607 1710 -1604 1539 206 0 16 chr6 84982462 84982778 -104296776 - AluJo SINE Alu -1 311 1 916 153 32 13 chr6 84982795 84982952 -104296602 - AluJo SINE Alu -30 282 123 246 271 178 0 chr6 84982967 84983074 -104296480 - MIR SINE MIR 0 262 137 1096 249 108 22 chr6 84983293 84983764 -104295790 - L2 LINE L2 -161 3152 2639 4124 182 37 49 chr6 84983784 84984643 -104294911 - MER21B LTR ERV1 -14 849 1 2098 206 71 99 chr6 84984643 84985370 -104294184 - L2 LINE L2 -671 2643 1938 2346 56 42 0 chr6 84985370 84985656 -104293898 - AluY SINE Alu -13 298 1 2098 206 71 99 chr6 84985656 84985715 -104293839 - L2 LINE L2 -1376 1938 1879 438 350 106 32 chr6 84985710 84986181 -104293373 + L2 LINE L2 2412 2917 -397 * 265 303 82 8 chr6 84986374 84986496 -104293058 + L2 LINE L2 3182 3312 -1 26 0 0 0 chr6 84986898 84986924 -104292630 + AT_rich Low_complexity Low_complexity 1 26 0 194 188 42 0 chr6 84986995 84987043 -104292511 + L2 LINE L2 3221 3270 -2 364 264 8 41 chr6 84987193 84987314 -104292240 - LTR67 LTR ERVL -16 541 425 2193 162 21 27 chr6 84987679 84988212 -104291342 - LTR10E LTR ERV1 -43 590 1 182 268 54 36 chr6 84988214 84988270 -104291284 + MIR SINE MIR 201 257 -5 370 261 197 11 chr6 84988625 84988808 -104290746 + MIR3 SINE MIR 6 219 -43 1631 208 20 29 chr6 84989715 84990061 -104289493 - MLT1A2 LTR MaLR -31 343 1 1296 138 69 4 chr6 84990063 84990294 -104289260 + L1MC1 LINE L1 5365 5610 -734 628 118 0 0 chr6 84990294 84990379 -104289175 + AluY SINE Alu 1 85 -225 2352 85 3 0 chr6 84990405 84990699 -104288855 + AluSc SINE Alu 1 295 -14 4004 139 42 4 chr6 84990701 84991407 -104288147 + L1MC1 LINE L1 5601 6333 0 1023 264 59 90 chr6 84991460 84992186 -104287368 - MER21B LTR ERV1 -123 808 21 427 235 15 66 chr6 84994543 84994679 -104284875 + FLAM_A SINE Alu 7 135 -7 2047 123 11 0 chr6 84995301 84995578 -104283976 - AluSg SINE Alu -30 280 1 2304 112 0 0 chr6 84995732 84996044 -104283510 - AluSx SINE Alu 0 312 1 225 200 0 0 chr6 84996580 84996620 -104282934 - MER58 DNA MER1_type 0 2420 2381 911 288 172 23 chr6 84996900 84997544 -104282010 + L2 LINE L2 2581 3310 -3 274 382 32 16 chr6 84997595 84997718 -104281836 + L2 LINE L2 3136 3260 -12 2327 80 0 10 chr6 84997735 84998035 -104281519 - AluSg1 SINE Alu -12 297 1 1845 155 7 3 chr6 84998037 84998333 -104281221 - AluJb SINE Alu -15 297 1 231 132 0 191 chr6 84999893 84999961 -104279593 - MER33 DNA MER1_type 0 324 270 2131 116 0 7 chr6 84999964 85000274 -104279280 - AluSg SINE Alu -2 308 1 1235 197 32 11 chr6 85000276 85000555 -104278999 - MER33 DNA MER1_type -38 286 2 24 32 0 0 chr6 85001971 85002002 -104277552 + AT_rich Low_complexity Low_complexity 1 31 0 401 340 148 0 chr6 85002126 85002329 -104277225 - MIR SINE MIR -11 251 19 22 56 0 0 chr6 85005486 85005522 -104274032 + AT_rich Low_complexity Low_complexity 1 36 0 631 222 177 24 chr6 85007516 85007940 -104271614 - HAL1 LINE L1 -7 2500 2012 516 273 149 43 chr6 85007942 85008264 -104271290 - HAL1 LINE L1 -1380 1127 772 550 310 51 74 chr6 85008406 85008799 -104270755 - HAL1 LINE L1 -2037 470 87 502 228 75 40 chr6 85008872 85009100 -104270454 - L1ME1 LINE L1 -109 6057 5822 350 305 103 22 chr6 85009609 85009839 -104269715 + MIR SINE MIR 2 248 -14 416 266 144 29 chr6 85010815 85010988 -104268566 - MIR SINE MIR -59 203 11 2123 51 69 18 chr6 85011151 85011427 -104268127 - AluSc SINE Alu -19 290 1 5236 60 61 24 chr6 85011680 85012010 -104267544 - MER4E LTR ERV1 0 766 450 2851 3 0 0 chr6 85012010 85012316 -104267238 + AluYa5 SINE Alu 1 306 -5 5236 60 61 24 chr6 85012316 85012724 -104266830 - MER4E LTR ERV1 -316 450 1 431 250 0 0 chr6 85013734 85013822 -104265732 - L2 LINE L2 -1 3312 3225 * 1326 236 155 99 chr6 85013820 85014761 -104264793 - L2 LINE L2 -572 2742 1749 2386 78 0 0 chr6 85014892 85015188 -104264366 - AluY SINE Alu -15 296 1 27 0 0 0 chr6 85017281 85017308 -104262246 + AT_rich Low_complexity Low_complexity 1 27 0 2125 110 10 0 chr6 85017515 85017858 -104261696 - AluSx SINE Alu 0 312 1 2248 110 3 3 chr6 85017865 85018175 -104261379 - AluSq SINE Alu -3 310 1 1843 102 4 0 chr6 85018185 85018430 -104261124 - AluSp SINE Alu -18 295 50 2240 78 7 10 chr6 85018440 85018733 -104260821 - AluSp SINE Alu -20 293 2 211 347 138 36 chr6 85018938 85019105 -104260449 + MIR3 SINE MIR 4 187 -21 190 298 0 0 chr6 85020174 85020221 -104259333 - MIR SINE MIR -197 65 19 2355 85 3 0 chr6 85020283 85020578 -104258976 - AluSp SINE Alu -17 296 1 266 274 57 0 chr6 85020718 85020824 -104258730 + MER112 DNA MER1_type 5 116 -144 191 272 148 12 chr6 85020884 85020965 -104258589 + L3 LINE CR1 404 495 -1082 1541 150 58 0 chr6 85020989 85021249 -104258305 - MER21A LTR ERV1 -34 897 623 2157 131 3 0 chr6 85021283 85021588 -104257966 + AluSx SINE Alu 1 306 -6 2490 66 13 0 chr6 85021669 85021972 -104257582 - AluSp SINE Alu -6 307 1 30 27 0 0 chr6 85022231 85022268 -104257286 + AT_rich Low_complexity Low_complexity 1 37 0 1087 288 131 28 chr6 85023475 85023751 -104255803 - L2 LINE L2 -22 3291 3045 1701 194 46 0 chr6 85023751 85024080 -104255474 + MER2 DNA MER2_type 1 344 0 1087 288 131 28 chr6 85024080 85024479 -104255075 - L2 LINE L2 -268 3045 2540 515 284 174 34 chr6 85024524 85024851 -104254703 - L2 LINE L2 0 3313 2941 754 158 8 23 chr6 85025668 85025801 -104253753 + FLAM_A SINE Alu 1 131 -2 1220 208 60 51 chr6 85027001 85027371 -104252183 - MLT1B LTR MaLR -2 388 16 2034 161 10 3 chr6 85027560 85027870 -104251684 - AluSx SINE Alu 0 312 1 391 271 34 8 chr6 85028749 85028867 -104250687 - L2 LINE L2 0 3313 3193 758 253 6 0 chr6 85028959 85029137 -104250417 - MER8 DNA MER2_type -60 179 1 23 0 0 0 chr6 85030037 85030060 -104249494 + AT_rich Low_complexity Low_complexity 1 23 0 4507 136 48 72 chr6 85030073 85030159 -104249395 - L1MA8 LINE L1 -4 6287 6200 561 96 0 0 chr6 85030159 85030253 -104249301 + (TA)n Simple_repeat Simple_repeat 1 94 0 4507 136 48 72 chr6 85030253 85031113 -104248441 - L1MA8 LINE L1 -91 6200 5364 2004 157 0 0 chr6 85031113 85031412 -104248142 - AluJb SINE Alu -13 299 1 4507 136 48 72 chr6 85031412 85031459 -104248095 - L1MA8 LINE L1 -927 5364 5317 5548 148 31 13 chr6 85032127 85033225 -104246329 - L1MA8 LINE L1 -812 5334 4217 2347 75 34 0 chr6 85033227 85033522 -104246032 + AluSq SINE Alu 1 305 -8 527 159 56 9 chr6 85033532 85033639 -104245915 - L1MA8 LINE L1 -2020 4126 4015 848 196 0 0 chr6 85034285 85034438 -104245116 - AluJb SINE Alu 0 312 160 33 0 0 0 chr6 85034438 85034471 -104245083 + AT_rich Low_complexity Low_complexity 1 33 0 1732 90 124 15 chr6 85034487 85034753 -104244801 - AluSg SINE Alu -7 303 9 971 248 103 75 chr6 85035396 85035923 -104243631 + MLT1G LTR MaLR 12 595 0 351 0 0 0 chr6 85036209 85036248 -104243306 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 363 262 173 18 chr6 85036291 85036516 -104243038 + MLT1L LTR MaLR 339 598 -17 1748 156 45 63 chr6 85036937 85037334 -104242220 + MLT1B LTR MaLR 1 390 0 200 309 0 0 chr6 85039031 85039086 -104240468 - MIR SINE MIR -4 258 204 1525 187 26 30 chr6 85039134 85039439 -104240115 + AluJo SINE Alu 9 312 0 604 223 0 8 chr6 85039603 85039724 -104239830 + MLT1J LTR MaLR 75 194 -317 328 339 100 63 chr6 85040343 85040644 -104238910 + L2 LINE L2 2949 3260 -12 2027 199 42 68 chr6 85040729 85041216 -104238338 - L1ME1 LINE L1 -9 6157 5688 1669 169 28 3 chr6 85041216 85041500 -104238054 - AluJo SINE Alu -21 291 1 2027 199 42 68 chr6 85041500 85041631 -104237923 - L1ME1 LINE L1 -478 5688 5555 33 0 0 0 chr6 85041733 85041766 -104237788 + AT_rich Low_complexity Low_complexity 1 33 0 272 319 0 0 chr6 85042211 85042283 -104237271 + MIR SINE MIR 41 112 -96 800 109 68 34 chr6 85043516 85043663 -104235891 + MLT1A1 LTR MaLR 1 152 -213 572 183 0 0 chr6 85043668 85043772 -104235782 + FAM SINE Alu 82 185 0 323 147 84 38 chr6 85043809 85043945 -104235609 + MLT1A1 LTR MaLR 186 374 0 937 247 103 77 chr6 85044282 85044736 -104234818 + MLT1J LTR MaLR 27 492 -19 204 322 11 23 chr6 85045315 85045402 -104234152 + MIR3 SINE MIR 121 206 -2 2239 111 0 0 chr6 85045647 85045944 -104233610 + AluSx SINE Alu 1 297 -15 414 293 18 48 chr6 85046272 85046439 -104233115 - MER5B DNA MER1_type -9 169 8 1937 243 50 10 chr6 85048070 85048569 -104230985 + LTR40a LTR ERVL 1 519 0 398 227 40 106 chr6 85048580 85048778 -104230776 - L1MC5 LINE L1 -423 7538 7354 1861 128 33 0 chr6 85049185 85049485 -104230069 + AluSx SINE Alu 1 309 0 222 227 136 57 chr6 85050473 85050561 -104228993 + L2 LINE L2 3168 3262 -10 540 0 0 0 chr6 85052169 85052229 -104227325 + (CA)n Simple_repeat Simple_repeat 1 60 0 405 0 0 0 chr6 85052228 85052273 -104227281 + (GA)n Simple_repeat Simple_repeat 2 46 0 * 21 36 0 0 chr6 85056842 85056870 -104222684 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr6 85059390 85059425 -104220129 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr6 85059498 85059521 -104220033 + AT_rich Low_complexity Low_complexity 1 23 0 1056 153 70 126 chr6 85059553 85059811 -104219743 - MER33 DNA MER1_type -2263 322 86 2045 112 0 0 chr6 85059811 85060087 -104219467 - AluSx SINE Alu -16 296 21 1056 153 70 126 chr6 85060087 85060169 -104219385 - MER33 DNA MER1_type -2499 86 1 449 276 55 17 chr6 85061051 85061232 -104218322 - MIR3 SINE MIR -17 191 4 202 183 70 0 chr6 85061871 85061986 -104217568 + (TA)n Simple_repeat Simple_repeat 1 123 0 1008 47 78 0 chr6 85062057 85062186 -104217368 - MER85 DNA T2_type 0 139 1 321 321 202 9 chr6 85062260 85062478 -104217076 + MIR SINE MIR 3 262 0 2270 109 3 0 chr6 85062786 85063098 -104216456 + AluSp SINE Alu 1 313 0 28 48 0 0 chr6 85063162 85063204 -104216350 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr6 85064750 85064772 -104214782 + AT_rich Low_complexity Low_complexity 1 22 0 4943 41 7 11 chr6 85066210 85066823 -104212731 + L1PA5 LINE L1 5545 6154 0 21 71 0 0 chr6 85067317 85067359 -104212195 + AT_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chr6 85068196 85068230 -104211324 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr6 85068556 85068584 -104210970 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 85069511 85069532 -104210022 + AT_rich Low_complexity Low_complexity 1 21 0 186 71 0 0 chr6 85073220 85073248 -104206306 + (TA)n Simple_repeat Simple_repeat 2 29 0 7232 172 9 4 chr6 85073259 85075384 -104204170 - L1PA13 LINE L1 -6 6157 4031 219 146 0 24 chr6 85075881 85075922 -104203632 - L2 LINE L2 -3 3310 3271 2449 88 0 3 chr6 85077854 85078185 -104201369 + L1PA7 LINE L1 5823 6152 -2 1941 148 0 19 chr6 85078276 85078586 -104200968 - AluSx SINE Alu -4 308 5 24 77 0 0 chr6 85079814 85079866 -104199688 + AT_rich Low_complexity Low_complexity 1 52 0 2489 134 56 35 chr6 85079867 85080263 -104199291 - L1MB3 LINE L1 -2 6181 5772 640 217 8 8 chr6 85080263 85080383 -104199171 - FLAM_A SINE Alu -13 120 1 2489 134 56 35 chr6 85080383 85080472 -104199082 - L1MB3 LINE L1 -411 5772 5686 363 349 80 52 chr6 85080594 85080921 -104198633 + L3b LINE CR1 1222 1557 -26 379 284 198 10 chr6 85081254 85081451 -104198103 - MIR SINE MIR -6 256 23 24 85 0 0 chr6 85082177 85082236 -104197318 + AT_rich Low_complexity Low_complexity 1 59 0 23 33 0 0 chr6 85082930 85082960 -104196594 + AT_rich Low_complexity Low_complexity 1 30 0 2056 113 21 0 chr6 85082960 85083243 -104196311 - AluSx SINE Alu -23 289 1 23 0 0 0 chr6 85083287 85083310 -104196244 + AT_rich Low_complexity Low_complexity 1 23 0 471 330 73 11 chr6 85083592 85083783 -104195771 - MIR SINE MIR -3 259 57 229 322 6 33 chr6 85083847 85084030 -104195524 + C-rich Low_complexity Low_complexity 2 179 0 247 310 17 17 chr6 85084037 85084211 -104195343 + CT-rich Low_complexity Low_complexity 5 178 0 189 281 56 45 chr6 85085705 85085794 -104193760 - MIR3 SINE MIR -109 99 10 2320 71 3 0 chr6 85085827 85086122 -104193432 - AluY SINE Alu -15 296 1 21 36 0 0 chr6 85086481 85086509 -104193045 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 85086686 85086714 -104192840 + AT_rich Low_complexity Low_complexity 1 28 0 2285 97 7 0 chr6 85086726 85087016 -104192538 + AluSq SINE Alu 4 295 -18 475 304 25 25 chr6 85087127 85087288 -104192266 + MIR SINE MIR 56 216 -46 1068 159 0 127 chr6 85087362 85087614 -104191940 + MER8 DNA MER2_type 6 225 -14 279 225 125 92 chr6 85091716 85091836 -104187718 - MER5B DNA MER1_type -26 152 29 214 200 0 18 chr6 85093142 85093197 -104186357 + A-rich Low_complexity Low_complexity 1 54 0 641 247 39 22 chr6 85095212 85095394 -104184160 + MIR SINE MIR 78 262 0 207 88 0 0 chr6 85095432 85095466 -104184088 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 1054 127 26 32 chr6 85095646 85095835 -104183719 + L1MC1 LINE L1 6145 6332 -1 9910 74 5 8 chr6 85096726 85098864 -104180690 - L1PA7 LINE L1 -3 6151 4018 370 101 101 0 chr6 85099041 85099110 -104180444 - MER2 DNA MER2_type -139 206 131 2947 149 64 2 chr6 85099130 85099659 -104179895 + MER6A DNA MER2_type 44 605 0 833 168 8 0 chr6 85099659 85099789 -104179765 - MER2 DNA MER2_type -214 131 1 215 98 66 0 chr6 85100926 85100987 -104178567 + (TA)n Simple_repeat Simple_repeat 1 65 0 3335 262 83 24 chr6 85101220 85101865 -104177689 - L1MEc LINE L1 -4883 1513 908 1254 201 33 101 chr6 85101865 85102262 -104177292 - MLT1A2 LTR MaLR 0 374 5 3335 262 83 24 chr6 85102262 85102929 -104176625 - L1MEc LINE L1 -5488 908 123 261 167 62 0 chr6 85105419 85105467 -104174087 - L2 LINE L2 -13 3300 3250 35 96 0 18 chr6 85106206 85106372 -104173182 + AT_rich Low_complexity Low_complexity 1 163 0 798 259 22 45 chr6 85109269 85109493 -104170061 - MER20 DNA MER1_type 0 219 1 232 278 153 0 chr6 85109915 85109987 -104169567 - MIR3 SINE MIR -39 169 87 2033 129 45 31 chr6 85111238 85111595 -104167959 - THE1B LTR MaLR -1 363 2 301 294 37 28 chr6 85112334 85112443 -104167111 - MIR3 SINE MIR -14 194 85 209 217 22 0 chr6 85112821 85112867 -104166687 - L2 LINE L2 -3 3269 3223 24 53 0 0 chr6 85113737 85113775 -104165779 + AT_rich Low_complexity Low_complexity 1 38 0 2004 132 0 7 chr6 85114471 85114791 -104164763 + AluSx SINE Alu 8 312 0 346 193 96 96 chr6 85115255 85115421 -104164133 + HsTC2 DNA Tc2 14 1897 -1 335 247 34 22 chr6 85115571 85115660 -104163894 - L2 LINE L2 -4 3309 3220 187 250 125 36 chr6 85119084 85119140 -104160414 + L2 LINE L2 3203 3263 -50 1545 165 18 28 chr6 85119212 85119539 -104160015 - MER33 DNA MER1_type 0 324 1 2509 62 0 0 chr6 85119719 85120023 -104159531 - AluY SINE Alu -7 304 1 24 0 0 0 chr6 85120282 85120306 -104159248 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr6 85121980 85122008 -104157546 + AT_rich Low_complexity Low_complexity 1 28 0 211 114 29 0 chr6 85122104 85122139 -104157415 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1418 212 13 71 chr6 85122259 85122641 -104156913 - MLT1A2 LTR MaLR 0 374 15 23 0 0 0 chr6 85122962 85122985 -104156569 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr6 85125769 85125805 -104153749 + AT_rich Low_complexity Low_complexity 1 36 0 2277 109 0 3 chr6 85125806 85126110 -104153444 - AluSx SINE Alu -9 303 1 216 261 159 0 chr6 85126268 85126337 -104153217 - L2 LINE L2 0 3313 3234 249 274 0 98 chr6 85131497 85131599 -104147955 + L2 LINE L2 3168 3259 -13 290 274 14 14 chr6 85131728 85131801 -104147753 - MIR SINE MIR -171 91 19 543 235 118 0 chr6 85132659 85132812 -104146742 - MER5B DNA MER1_type -6 172 2 235 297 16 0 chr6 85133541 85133605 -104145949 + MIR3 SINE MIR 141 205 -3 327 316 63 0 chr6 85134856 85134951 -104144603 - L2 LINE L2 0 3272 3172 21 57 0 0 chr6 85135429 85135464 -104144090 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr6 85136964 85136992 -104142562 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 85137749 85137778 -104141776 + AT_rich Low_complexity Low_complexity 1 29 0 1404 123 8 41 chr6 85137873 85138116 -104141438 - L1MC1 LINE L1 0 6333 6099 1944 103 60 11 chr6 85138257 85138539 -104141015 + AluSc SINE Alu 1 296 -13 513 149 81 0 chr6 85138772 85138859 -104140695 - MER5A DNA MER1_type -85 104 11 477 232 260 6 chr6 85140272 85140449 -104139105 - MIR SINE MIR -29 233 12 273 163 0 0 chr6 85146589 85146638 -104132916 + CT-rich Low_complexity Low_complexity 2 50 0 29 28 0 0 chr6 85147229 85147265 -104132289 + AT_rich Low_complexity Low_complexity 1 36 0 1468 102 10 0 chr6 85148018 85148223 -104131331 - L1PA12 LINE L1 -7 6161 5955 839 153 34 53 chr6 85149230 85149439 -104130115 - L1MA9 LINE L1 -6 6306 6102 230 250 54 0 chr6 85151011 85151067 -104128487 - MIR SINE MIR -133 129 71 1588 194 0 28 chr6 85152010 85152298 -104127256 + AluJo SINE Alu 1 280 -32 278 0 0 51 chr6 85152298 85152337 -104127217 + (CAAT)n Simple_repeat Simple_repeat 4 40 0 2219 118 10 0 chr6 85152827 85153133 -104126421 + AluSq SINE Alu 1 309 -4 1921 136 43 10 chr6 85153206 85153508 -104126046 + AluSx SINE Alu 1 312 0 502 258 220 34 chr6 85154483 85154774 -104124780 - L2 LINE L2 -2 3311 2967 185 263 34 19 chr6 85156684 85156760 -104122794 + MIR SINE MIR 44 124 -84 21 82 0 0 chr6 85157421 85157470 -104122084 + AT_rich Low_complexity Low_complexity 1 49 0 197 250 0 0 chr6 85158581 85158625 -104120929 - L2 LINE L2 -20 3252 3209 1890 159 0 17 chr6 85161730 85162026 -104117528 - AluJo SINE Alu -21 291 1 22 0 0 0 chr6 85162217 85162239 -104117315 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr6 85162908 85162938 -104116616 + AT_rich Low_complexity Low_complexity 1 30 0 2763 13 0 0 chr6 85163477 85163783 -104115771 - AluYa5 SINE Alu -5 306 1 27 29 0 0 chr6 85164044 85164078 -104115476 + AT_rich Low_complexity Low_complexity 1 34 0 2914 9 0 0 chr6 85164746 85165062 -104114492 - AluYb8 SINE Alu -2 316 1 22 70 0 0 chr6 85165756 85165799 -104113755 + AT_rich Low_complexity Low_complexity 1 43 0 250 133 0 0 chr6 85166300 85166345 -104113209 - MADE1 DNA Mariner -35 45 1 1273 280 65 17 chr6 85167093 85167816 -104111738 - L2 LINE L2 -1 3312 2549 2307 67 14 0 chr6 85168045 85168342 -104111212 - L1PA7 LINE L1 -5 6149 5849 294 29 0 0 chr6 85168663 85168698 -104110856 + (GA)n Simple_repeat Simple_repeat 2 36 0 301 345 11 21 chr6 85169542 85169733 -104109821 + MER5A DNA MER1_type 1 189 0 2343 74 7 3 chr6 85171380 85171677 -104107877 - AluY SINE Alu -13 298 1 320 64 21 0 chr6 85171877 85171924 -104107630 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 209 208 0 0 chr6 85173549 85173597 -104105957 + (TA)n Simple_repeat Simple_repeat 2 49 0 243 61 0 0 chr6 85173716 85173749 -104105805 + (TA)n Simple_repeat Simple_repeat 2 34 0 204 350 50 0 chr6 85178207 85178307 -104101247 + L2 LINE L2 2243 2347 -967 1176 208 49 41 chr6 85178309 85178733 -104100821 - MLT1J LTR MaLR -1 510 36 303 330 179 34 chr6 85178775 85179132 -104100422 + L2 LINE L2 2343 2751 -563 772 331 121 49 chr6 85179158 85179917 -104099637 + L2 LINE L2 218 1031 -2283 232 422 25 25 chr6 85181133 85181332 -104098222 + L2 LINE L2 1068 1266 -2048 755 234 44 71 chr6 85181572 85181867 -104097687 - L2 LINE L2 0 3313 3027 860 356 121 33 chr6 85182018 85183014 -104096540 + L2 LINE L2 2196 3266 -6 313 256 200 31 chr6 85184054 85184088 -104095466 - MIR SINE MIR -25 237 210 2068 147 9 20 chr6 85184088 85184435 -104095119 + MER61A LTR ERV1 1 343 0 313 256 200 31 chr6 85184435 85184560 -104094994 - MIR SINE MIR -52 210 51 284 336 53 0 chr6 85184636 85184749 -104094805 + MIR SINE MIR 6 124 -138 463 229 90 8 chr6 85185484 85185606 -104093948 + MIR SINE MIR 20 151 -111 231 275 12 12 chr6 85187066 85187146 -104092408 - MIR SINE MIR 0 262 183 * 306 206 15 0 chr6 85187132 85187200 -104092354 + MIR SINE MIR 184 252 -10 397 331 37 7 chr6 85187233 85187369 -104092185 - MIR SINE MIR -120 142 3 6213 218 56 47 chr6 85188279 85190004 -104089550 + L1M4 LINE L1 10 1742 -5179 * 6408 231 50 10 chr6 85189984 85190334 -104089220 + L1M4 LINE L1 4142 4477 -2512 1166 180 40 117 chr6 85190334 85190729 -104088825 - MLT1A1 LTR MaLR 0 365 1 6408 231 50 10 chr6 85190729 85192541 -104087013 + L1M4 LINE L1 4477 6385 -604 2293 126 25 3 chr6 85192554 85192910 -104086644 - THE1B LTR MaLR 0 364 1 545 280 116 62 chr6 85194429 85194850 -104084704 + LTR33 LTR ERVL 1 444 -77 213 200 0 0 chr6 85195828 85195868 -104083686 + GA-rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr6 85198692 85198722 -104080832 + AT_rich Low_complexity Low_complexity 1 30 0 277 322 136 34 chr6 85198940 85199353 -104080201 + L2 LINE L2 1644 2098 -1216 722 289 14 67 chr6 85199382 85199728 -104079826 + MLT1K LTR MaLR 12 339 -249 420 191 67 0 chr6 85199923 85200028 -104079526 + MER63 DNA MER1_type 914 1025 -37 1680 140 74 44 chr6 85200103 85200467 -104079087 + THE1C LTR MaLR 1 375 0 9079 124 32 34 chr6 85200469 85202043 -104077511 + THE1C-int LTR MaLR 3 1573 -7 945 173 128 9 chr6 85202050 85202276 -104077278 + THE1C LTR MaLR 1 253 -111 1068 196 43 24 chr6 85253593 85253848 -104025706 - MLT1C LTR MaLR 0 467 208 256 24 49 0 chr6 85254512 85254553 -104025001 + (TA)n Simple_repeat Simple_repeat 2 44 0 1839 176 0 17 chr6 85255408 85255709 -104023845 - AluJb SINE Alu -16 296 1 181 298 0 0 chr6 85257893 85257940 -104021614 + L3b LINE CR1 1537 1583 0 650 293 32 0 chr6 85258488 85258676 -104020878 - LTR16A LTR ERVL 0 450 257 362 325 67 0 chr6 85258868 85258988 -104020566 + LTR16A LTR ERVL 152 279 -171 335 280 34 0 chr6 85263501 85263619 -104015935 + CT-rich Low_complexity Low_complexity 1 122 0 325 261 23 15 chr6 85263756 85263886 -104015668 + (TA)n Simple_repeat Simple_repeat 2 132 0 312 286 114 59 chr6 85263968 85264188 -104015366 - L1MC4 LINE L1 -305 7737 7506 23 0 0 0 chr6 85264197 85264220 -104015334 + AT_rich Low_complexity Low_complexity 1 23 0 641 321 38 13 chr6 85265176 85265413 -104014141 + MIR SINE MIR 2 244 -18 264 300 0 14 chr6 85266089 85266159 -104013395 + CT-rich Low_complexity Low_complexity 1 69 0 245 290 47 30 chr6 85266201 85266370 -104013184 + L1M4 LINE L1 2311 2482 -3664 2118 119 0 26 chr6 85266395 85266698 -104012856 + AluSq SINE Alu 1 295 -18 547 302 83 48 chr6 85266850 85267440 -104012114 + L1M4 LINE L1 2676 3286 -2860 525 294 90 95 chr6 85267456 85267899 -104011655 - LTR33 LTR ERVL -27 494 54 351 324 43 7 chr6 85268946 85269085 -104010469 - MIR3 SINE MIR -5 203 60 35 88 0 0 chr6 85269140 85269231 -104010323 + AT_rich Low_complexity Low_complexity 1 91 0 834 348 110 38 chr6 85269508 85270263 -104009291 - L3 LINE CR1 -2 1575 767 2202 82 21 0 chr6 85270439 85270720 -104008834 + AluY SINE Alu 1 287 -24 238 133 56 0 chr6 85270720 85270810 -104008744 + (TA)n Simple_repeat Simple_repeat 2 96 0 2335 105 0 0 chr6 85270813 85271118 -104008436 + AluSq SINE Alu 3 307 -6 1018 223 38 0 chr6 85271342 85271553 -104008001 - MER20 DNA MER1_type 0 219 1 2152 108 16 10 chr6 85271715 85272022 -104007532 - AluSx SINE Alu -3 309 1 535 292 42 120 chr6 85272078 85272479 -104007075 - L2 LINE L2 0 3313 2944 1588 199 45 37 chr6 85272482 85272859 -104006695 + MLT1B LTR MaLR 3 382 -8 969 321 78 20 chr6 85272888 85273390 -104006164 - L2 LINE L2 -400 2914 2384 324 0 0 0 chr6 85273607 85273643 -104005911 + (TC)n Simple_repeat Simple_repeat 1 36 0 246 32 0 0 chr6 85273642 85273673 -104005881 + (CA)n Simple_repeat Simple_repeat 1 31 0 * 473 267 23 45 chr6 85274699 85274875 -104004679 - MIR SINE MIR -32 230 59 25 0 0 0 chr6 85275441 85275466 -104004088 + AT_rich Low_complexity Low_complexity 1 25 0 2122 113 0 0 chr6 85275475 85275757 -104003797 + AluSx SINE Alu 6 287 -25 213 284 216 29 chr6 85277682 85277784 -104001770 - L2 LINE L2 0 3313 3193 24 0 0 0 chr6 85278280 85278304 -104001250 + AT_rich Low_complexity Low_complexity 1 24 0 319 316 88 0 chr6 85278422 85278558 -104000996 - L2 LINE L2 -236 3036 2889 1332 213 128 27 chr6 85279803 85280367 -103999187 - MER114 LTR ERV 0 648 28 53 78 0 0 chr6 85280524 85280640 -103998914 + AT_rich Low_complexity Low_complexity 1 116 0 425 312 47 12 chr6 85280774 85280944 -103998610 + MIR SINE MIR 72 247 -15 3579 111 2 6 chr6 85280994 85281488 -103998066 + L1PA15-16 LINE L1 1 492 -6357 28 48 0 0 chr6 85281541 85281583 -103997971 + AT_rich Low_complexity Low_complexity 1 42 0 184 355 145 0 chr6 85281834 85281910 -103997644 - L2 LINE L2 -33 3239 3153 254 355 116 0 chr6 85282420 85282541 -103997013 - MIR SINE MIR -58 150 16 345 237 44 26 chr6 85282628 85282742 -103996812 - MER103 DNA DNA -12 154 39 404 277 115 18 chr6 85283077 85283296 -103996258 + MIR SINE MIR 4 232 -30 726 287 34 5 chr6 85283479 85283688 -103995866 - MIR SINE MIR 0 262 48 203 30 0 61 chr6 85283734 85283767 -103995787 + (TTTTTA)n Simple_repeat Simple_repeat 4 34 0 338 24 0 0 chr6 85283771 85283813 -103995741 - L1PA3 LINE L1 -5 6150 6109 43877 41 3 3 chr6 85283913 85289512 -103990042 - L1P2 LINE L1 -555 5600 1 21 95 0 0 chr6 85289580 85289643 -103989911 + AT_rich Low_complexity Low_complexity 1 63 0 405 0 0 0 chr6 85291745 85291790 -103987764 + (T)n Simple_repeat Simple_repeat 1 45 0 215 320 0 0 chr6 85291790 85291840 -103987714 + MIR SINE MIR 32 81 -181 262 315 82 78 chr6 85292693 85292950 -103986604 - L2 LINE L2 -26 3246 2989 13225 189 59 27 chr6 85293081 85294016 -103985538 + L1MA4 LINE L1 1 905 -5577 2229 75 3 14 chr6 85294016 85294310 -103985244 - AluY SINE Alu -20 291 1 13225 189 59 27 chr6 85294310 85299160 -103980394 + L1MA4 LINE L1 905 6023 -459 321 89 0 0 chr6 85299160 85299205 -103980349 + (CA)n Simple_repeat Simple_repeat 2 46 0 13225 189 59 27 chr6 85299205 85299674 -103979880 + L1MA4 LINE L1 6023 6476 -6 180 152 0 0 chr6 85299794 85299827 -103979727 + CT-rich Low_complexity Low_complexity 3 35 0 567 263 117 0 chr6 85299875 85300054 -103979500 - MIR SINE MIR -13 249 50 273 403 63 14 chr6 85300087 85300308 -103979246 + L2 LINE L2 2474 2705 -609 234 152 87 0 chr6 85300346 85300392 -103979162 - MER5A DNA MER1_type -139 50 1 25 31 0 0 chr6 85302284 85302316 -103977238 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr6 85302522 85302551 -103977003 + AT_rich Low_complexity Low_complexity 1 29 0 222 91 0 0 chr6 85302769 85302802 -103976752 + (A)n Simple_repeat Simple_repeat 1 33 0 225 313 204 14 chr6 85303361 85303508 -103976046 + MIR3 SINE MIR 8 182 -26 185 189 0 27 chr6 85303546 85303583 -103975971 - L2 LINE L2 -2 3270 3235 30619 47 2 1 chr6 85303890 85310032 -103969522 + L1PA4 LINE L1 1 6155 0 590 317 184 17 chr6 85310042 85310461 -103969093 - L2 LINE L2 -632 2682 2194 1142 226 27 15 chr6 85312229 85312490 -103967064 - MLT1A1 LTR MaLR 0 365 102 895 268 103 24 chr6 85314125 85314502 -103965052 - MLT1I LTR MaLR 0 409 3 316 232 53 121 chr6 85314614 85314804 -103964750 - MLT1I-int LTR MaLR -167 1204 1028 243 287 93 9 chr6 85315962 85316070 -103963484 - MLT1I LTR MaLR -49 360 244 268 25 0 0 chr6 85316102 85316142 -103963412 - L1PA2 LINE L1 0 6155 6116 * 843 40 0 0 chr6 85316141 85316242 -103963312 + L1PA4 LINE L1 5772 5872 -283 360 274 44 9 chr6 85316253 85316366 -103963188 - MLT1I LTR MaLR -282 127 11 868 309 172 12 chr6 85316439 85317187 -103962367 + L2 LINE L2 2359 3232 -81 335 211 33 89 chr6 85317249 85317339 -103962215 + L2 LINE L2 3229 3313 0 29 47 0 0 chr6 85317532 85317575 -103961979 + AT_rich Low_complexity Low_complexity 1 43 0 268 200 100 47 chr6 85317827 85317997 -103961557 + L1MC/D LINE L1 5291 5469 -2339 2467 65 0 0 chr6 85318441 85318747 -103960807 + AluY SINE Alu 1 306 -5 200 280 0 27 chr6 85320369 85320444 -103959110 + A-rich Low_complexity Low_complexity 4 76 0 973 193 18 45 chr6 85320667 85320890 -103958664 + MER20 DNA MER1_type 2 218 -1 2527 85 38 0 chr6 85321244 85321586 -103957968 - THE1A LTR MaLR 0 355 1 232 367 136 36 chr6 85321989 85322379 -103957175 + L2 LINE L2 2824 3252 -20 24 53 0 0 chr6 85323562 85323600 -103955954 + AT_rich Low_complexity Low_complexity 1 38 0 2553 54 0 0 chr6 85323608 85323903 -103955651 - AluY SINE Alu -16 295 1 224 390 57 0 chr6 85324241 85324346 -103955208 + MIR3 SINE MIR 91 201 -7 22 56 0 0 chr6 85324665 85324701 -103954853 + AT_rich Low_complexity Low_complexity 1 36 0 2269 45 42 7 chr6 85325034 85325320 -103954234 + AluYa5 SINE Alu 1 296 -15 194 0 0 37 chr6 85325324 85325351 -103954203 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 758 277 80 0 chr6 85325473 85325762 -103953792 + MER46C DNA MER2_type 8 319 -19 1220 291 58 23 chr6 85325796 85326191 -103953363 + MLT1G1 LTR MaLR 1 409 -186 357 135 96 99 chr6 85326221 85326350 -103953204 + MLT1G1 LTR MaLR 316 594 -1 244 358 18 28 chr6 85326350 85326441 -103953113 + MLT1F1 LTR MaLR 224 313 -277 686 250 12 17 chr6 85326478 85326650 -103952904 + MLT1F1 LTR MaLR 397 567 0 333 0 0 0 chr6 85327427 85327464 -103952090 + (TG)n Simple_repeat Simple_repeat 1 37 0 224 100 25 0 chr6 85327533 85327573 -103951981 + (TA)n Simple_repeat Simple_repeat 2 42 0 1616 266 53 17 chr6 85329234 85329764 -103949790 + MER68 LTR ERV1 1 549 -13 2244 107 3 0 chr6 85330615 85330924 -103948630 - AluY SINE Alu -1 310 1 6967 55 1 2 chr6 85331151 85332028 -103947526 - L1PA5 LINE L1 0 6154 5279 2198 133 0 0 chr6 85332314 85332623 -103946931 + AluY SINE Alu 1 309 -2 1815 164 3 22 chr6 85333117 85333435 -103946119 + AluSx SINE Alu 1 312 0 2163 117 0 0 chr6 85333583 85333883 -103945671 + AluY SINE Alu 1 300 -11 22 0 0 0 chr6 85335129 85335151 -103944403 + AT_rich Low_complexity Low_complexity 1 22 0 1861 138 0 14 chr6 85336136 85336411 -103943143 - AluSx SINE Alu -16 296 26 1167 191 127 78 chr6 85336710 85337081 -103942473 + MLT1B LTR MaLR 1 389 -1 1328 179 75 70 chr6 85339620 85340005 -103939549 + MLT1B LTR MaLR 4 390 0 495 306 65 22 chr6 85340014 85340243 -103939311 - MLT1L LTR MaLR -177 438 200 731 276 28 21 chr6 85340612 85340895 -103938659 - L1ME LINE L1 -347 5774 5490 231 36 0 0 chr6 85342165 85342193 -103937361 + (TG)n Simple_repeat Simple_repeat 2 29 0 189 0 0 0 chr6 85342452 85342473 -103937081 + (CAAAAA)n Simple_repeat Simple_repeat 1 21 0 234 158 0 0 chr6 85342669 85342707 -103936847 + MER53 DNA DNA 1 38 -151 23 68 0 0 chr6 85344591 85344635 -103934919 + AT_rich Low_complexity Low_complexity 1 44 0 493 133 56 0 chr6 85344654 85344744 -103934810 + MER53 DNA DNA 95 189 0 205 71 95 0 chr6 85344802 85344844 -103934710 + A-rich Low_complexity Low_complexity 5 50 0 2200 173 27 5 chr6 85344930 85345340 -103934214 - L1PA16 LINE L1 -18 6148 5730 3103 146 15 15 chr6 85345413 85345961 -103933593 + L1MC2 LINE L1 5323 5870 -463 1251 194 56 7 chr6 85346083 85346367 -103933187 + L1MC2 LINE L1 5854 6151 -193 323 145 16 0 chr6 85346369 85346431 -103933123 + L1MC1 LINE L1 6270 6332 -1 263 208 0 65 chr6 85347029 85347106 -103932448 + L1MB7 LINE L1 1321 1392 -5150 * 8931 234 49 28 chr6 85347102 85350943 -103928611 + L1MB7 LINE L1 2326 6274 -408 237 33 0 0 chr6 85350943 85350973 -103928581 + (TA)n Simple_repeat Simple_repeat 1 30 0 8931 234 49 28 chr6 85350973 85351371 -103928183 + L1MB7 LINE L1 6274 6662 -20 4525 170 10 28 chr6 85352376 85353207 -103926347 - MSTA-int LTR MaLR -835 816 1 2385 160 39 10 chr6 85353207 85353620 -103925934 - MSTA LTR MaLR 0 428 4 207 280 108 11 chr6 85353639 85353732 -103925822 + MIR SINE MIR 147 248 -14 255 103 0 0 chr6 85353855 85353894 -103925660 + (CA)n Simple_repeat Simple_repeat 2 40 0 29 0 0 0 chr6 85354727 85354756 -103924798 + AT_rich Low_complexity Low_complexity 1 29 0 2324 100 10 0 chr6 85355490 85355800 -103923754 - AluSq SINE Alu 0 313 1 249 83 0 0 chr6 85355939 85355975 -103923579 + (G)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr6 85356121 85356142 -103923412 + AT_rich Low_complexity Low_complexity 1 21 0 5899 46 18 4 chr6 85356150 85357217 -103922337 - L1P2 LINE L1 -429 5725 4642 291 254 39 54 chr6 85357334 85357464 -103922090 + MER112 DNA MER1_type 132 259 -1 686 132 70 0 chr6 85357981 85358110 -103921444 + L1PA15 LINE L1 6025 6162 -3 27 0 0 0 chr6 85358447 85358474 -103921080 + AT_rich Low_complexity Low_complexity 1 27 0 2237 244 70 84 chr6 85358577 85358761 -103920793 - L1MD3 LINE L1 0 7995 7810 2240 77 3 43 chr6 85358761 85359085 -103920469 - AluY SINE Alu 0 311 1 2237 244 70 84 chr6 85359085 85359640 -103919914 - L1MD3 LINE L1 -185 7810 7144 375 222 12 0 chr6 85359640 85359721 -103919833 - MLT1F1 LTR MaLR -450 117 36 2237 244 70 84 chr6 85359721 85360044 -103919510 - L1MD3 LINE L1 -851 7144 6818 351 277 0 0 chr6 85360105 85360199 -103919355 + L1 LINE L1 3122 3215 -2931 354 240 82 58 chr6 85360240 85360582 -103918972 + L1 LINE L1 3206 3555 -2591 327 256 0 0 chr6 85360793 85360875 -103918679 - L1MD3 LINE L1 -2018 5790 5709 * 845 170 219 0 chr6 85360871 85361095 -103918459 + L1MA5 LINE L1 6028 6300 0 2685 78 6 0 chr6 85361283 85361640 -103917914 - L1PA7 LINE L1 -106 6048 5690 387 71 0 0 chr6 85361640 85361696 -103917858 + L1PA7 LINE L1 6099 6154 0 2564 109 3 8 chr6 85361806 85362172 -103917382 + THE1B LTR MaLR 1 364 0 2221 135 0 0 chr6 85362575 85362887 -103916667 - AluSx SINE Alu 0 312 1 209 220 0 34 chr6 85362892 85362951 -103916603 + (TATG)n Simple_repeat Simple_repeat 3 59 0 27 0 0 0 chr6 85364328 85364355 -103915199 + AT_rich Low_complexity Low_complexity 1 27 0 26 30 0 0 chr6 85364870 85364903 -103914651 + AT_rich Low_complexity Low_complexity 1 33 0 2530 47 0 3 chr6 85365127 85365427 -103914127 + AluY SINE Alu 1 299 -12 183 308 64 13 chr6 85365866 85365944 -103913610 + MIR3 SINE MIR 100 181 -27 2349 60 0 20 chr6 85365953 85366254 -103913300 - AluY SINE Alu -12 299 5 355 295 31 48 chr6 85366705 85367019 -103912535 + L1MCa LINE L1 2 269 -5776 955 227 83 7 chr6 85367019 85367296 -103912258 + L1MCa LINE L1 2737 3034 -3530 2548 40 0 0 chr6 85367344 85367642 -103911912 - AluY SINE Alu -11 300 3 261 139 0 0 chr6 85368317 85368360 -103911194 + (TTTTC)n Simple_repeat Simple_repeat 4 46 0 4633 55 19 0 chr6 85368360 85368946 -103910608 + L1PA5 LINE L1 5553 6149 -5 269 275 28 37 chr6 85368971 85369080 -103910474 - L1M4 LINE L1 -3364 2782 2675 376 330 98 17 chr6 85369171 85369580 -103909974 - L1M4 LINE L1 -3595 2551 2110 519 338 31 14 chr6 85370175 85370462 -103909092 - HAL1b LINE L1 -820 528 237 5725 225 83 11 chr6 85370469 85373610 -103905944 - L1MA5 LINE L1 -2 6298 2930 680 202 0 5 chr6 85373823 85373972 -103905582 - L1 LINE L1 -3225 3942 3800 1373 233 0 11 chr6 85373974 85374245 -103905309 + AluSq SINE Alu 1 268 -45 5663 218 17 13 chr6 85374247 85374392 -103905162 - L1 LINE L1 -3353 3814 3671 2240 111 0 25 chr6 85374392 85374707 -103904847 + AluSq SINE Alu 1 307 -6 5663 218 17 13 chr6 85374707 85376767 -103902787 - L1 LINE L1 -3496 3671 1595 429 298 16 16 chr6 85376803 85376927 -103902627 - L1 LINE L1 -6285 883 760 1972 224 101 70 chr6 85377023 85377783 -103901771 + LTR1B LTR ERV1 1 981 -39 471 247 5 129 chr6 85377873 85378075 -103901479 - L1 LINE L1 -6272 896 579 2886 207 123 27 chr6 85378101 85378850 -103900704 - L1M2a LINE L1 -6342 826 6 5991 100 14 0 chr6 85379326 85380420 -103899134 - L1PA13 LINE L1 -4 6159 5052 958 257 34 14 chr6 85380420 85380836 -103898718 - L1M4c LINE L1 -4038 2608 2185 1955 244 45 91 chr6 85380856 85381582 -103897972 - L1M4c LINE L1 -5697 845 153 326 198 9 26 chr6 85381582 85381698 -103897856 + CT-rich Low_complexity Low_complexity 2 115 0 532 172 0 16 chr6 85381817 85381945 -103897609 + CT-rich Low_complexity Low_complexity 2 127 0 761 178 7 0 chr6 85381973 85382108 -103897446 - L1M4c LINE L1 -6402 140 5 513 161 42 0 chr6 85382429 85382547 -103897007 + CT-rich Low_complexity Low_complexity 2 124 0 195 306 14 28 chr6 85382846 85382918 -103896636 - MER5A DNA MER1_type -30 159 89 23 54 0 0 chr6 85384005 85384042 -103895512 + AT_rich Low_complexity Low_complexity 1 37 0 1763 139 33 15 chr6 85384128 85384402 -103895152 + AluSx SINE Alu 9 287 -25 231 221 132 0 chr6 85384495 85384563 -103894991 - L1MC4 LINE L1 -1352 6690 6614 1729 155 45 59 chr6 85384769 85385144 -103894410 - Tigger7 DNA MER2_type 0 2587 2218 3811 165 64 22 chr6 85385144 85385883 -103893671 - Tigger7 DNA MER2_type -1717 770 1 341 349 84 40 chr6 85386182 85386722 -103892832 - L2 LINE L2 -74 3239 2712 2702 76 5 5 chr6 85387404 85387774 -103891780 - L1PA7 LINE L1 -1 6153 5784 6158 84 17 1 chr6 85387774 85388657 -103890897 + L1P LINE L1 4457 5353 -793 1441 203 3 43 chr6 85388662 85388967 -103890587 - AluJo SINE Alu -19 293 1 2072 137 0 3 chr6 85389100 85389406 -103890148 + AluSx SINE Alu 1 305 -7 565 255 83 103 chr6 85389790 85390500 -103889054 - HAL1b LINE L1 -127 1221 526 519 345 120 31 chr6 85390547 85390904 -103888650 - L2 LINE L2 -4 3309 2921 965 158 55 0 chr6 85391079 85391243 -103888311 - THE1C LTR MaLR -202 173 1 9358 126 27 50 chr6 85391248 85391920 -103887634 - THE1C-int LTR MaLR -7 1573 887 2103 130 10 0 chr6 85391920 85392221 -103887333 - AluSx SINE Alu -8 304 1 9358 126 27 50 chr6 85392221 85393156 -103886398 - THE1C-int LTR MaLR -693 887 4 855 143 28 60 chr6 85393159 85393341 -103886213 - THE1C LTR MaLR 0 375 200 2694 24 0 0 chr6 85393356 85393653 -103885901 - AluYa5 SINE Alu -14 297 1 1169 61 0 14 chr6 85393653 85393794 -103885760 - AluY SINE Alu -170 141 1 808 185 80 12 chr6 85393807 85393969 -103885585 - THE1C LTR MaLR -202 173 1 221 229 29 43 chr6 85393969 85394039 -103885515 - L2 LINE L2 -494 2820 2752 1139 350 150 13 chr6 85394060 85394935 -103884619 + L2 LINE L2 1793 2787 -527 390 139 0 0 chr6 85395241 85395313 -103884241 + (TA)n Simple_repeat Simple_repeat 2 73 0 247 218 0 0 chr6 85395318 85395373 -103884181 - L1MDa LINE L1 -4366 1714 1660 342 229 74 0 chr6 85395395 85395517 -103884037 - L1MC4 LINE L1 -223 7819 7689 1199 283 79 35 chr6 85395554 85396104 -103883450 - L1MDa LINE L1 -4501 1579 1081 2571 37 3 0 chr6 85396104 85396400 -103883154 + AluY SINE Alu 4 300 -11 1199 283 79 35 chr6 85396400 85396730 -103882824 - L1MDa LINE L1 -4999 1081 767 5862 145 6 27 chr6 85396771 85398178 -103881376 - L1PB1 LINE L1 -2 6149 4776 1805 212 28 63 chr6 85398175 85398685 -103880869 - L1PBa LINE L1 -6366 497 6 * 581 314 122 53 chr6 85398702 85399367 -103880187 - L1MDa LINE L1 -5310 760 50 395 226 19 9 chr6 85399515 85399621 -103879933 - L1MC4 LINE L1 -1000 7042 6936 251 274 45 78 chr6 85399821 85400000 -103879554 + L1MC4 LINE L1 7501 7673 -369 3587 178 16 22 chr6 85400582 85401317 -103878237 - L1PB1 LINE L1 -2187 3959 3229 12319 109 11 45 chr6 85401335 85402138 -103877416 - L1PB1 LINE L1 -3537 2609 1780 2473 47 0 0 chr6 85402138 85402438 -103877116 - L1PA5 LINE L1 -11 6143 5844 12319 109 11 45 chr6 85402438 85403650 -103875904 - L1PB1 LINE L1 -4366 1780 663 16760 76 5 0 chr6 85403654 85406812 -103872742 + L1PA6 LINE L1 3020 6153 -1 1670 228 5 2 chr6 85406812 85407234 -103872320 - L1P LINE L1 -2935 3211 2789 19826 175 30 30 chr6 85407235 85407306 -103872248 - L1 LINE L1 -2878 4687 4618 1911 161 7 0 chr6 85407306 85407616 -103871938 + AluSx SINE Alu 1 312 0 19826 175 30 30 chr6 85407616 85412218 -103867336 - L1 LINE L1 -2947 4618 13 423 257 111 66 chr6 85412392 85412618 -103866936 - MLT1J LTR MaLR -50 461 226 5272 105 53 29 chr6 85412923 85414595 -103864959 + L1PA13 LINE L1 4461 6159 -4 27 49 0 0 chr6 85414624 85414665 -103864889 + AT_rich Low_complexity Low_complexity 1 41 0 579 252 164 30 chr6 85414768 85415030 -103864524 + MER5C DNA MER1_type 5 301 -23 22 0 0 0 chr6 85416642 85416664 -103862890 + AT_rich Low_complexity Low_complexity 1 22 0 231 226 0 28 chr6 85417649 85417755 -103861799 + (CTA)n Simple_repeat Simple_repeat 2 104 0 284 274 171 48 chr6 85417806 85417952 -103861602 - MIR SINE MIR -68 194 31 34 42 0 0 chr6 85418613 85418661 -103860893 + AT_rich Low_complexity Low_complexity 1 48 0 7269 207 22 16 chr6 85418862 85420539 -103859015 + L1MA9 LINE L1 3446 5133 -1013 4651 174 55 13 chr6 85420553 85420585 -103858969 + L1MA9 LINE L1 5264 5293 -1019 212 0 36 0 chr6 85420585 85420613 -103858941 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 4651 174 55 13 chr6 85420613 85421439 -103858115 + L1MA9 LINE L1 5293 6169 -143 507 33 0 0 chr6 85421439 85421500 -103858054 + (CA)n Simple_repeat Simple_repeat 2 62 0 4651 174 55 13 chr6 85421500 85421612 -103857942 + L1MA9 LINE L1 6169 6275 -37 23 0 0 0 chr6 85421812 85421835 -103857719 + AT_rich Low_complexity Low_complexity 1 23 0 246 81 0 0 chr6 85425165 85425202 -103854352 + (CAT)n Simple_repeat Simple_repeat 3 39 0 535 267 0 0 chr6 85425243 85425363 -103854191 + HsTC2 DNA Tc2 7 126 -1772 576 252 98 56 chr6 85425374 85425462 -103854092 + HsTC2 DNA Tc2 1257 1340 -558 2165 100 7 0 chr6 85425462 85425762 -103853792 - AluY SINE Alu -9 302 1 576 252 98 56 chr6 85425762 85425992 -103853562 + HsTC2 DNA Tc2 1340 1765 -133 331 148 0 0 chr6 85425992 85426046 -103853508 - MLT2B1 LTR ERVL 0 520 467 180 0 0 0 chr6 85426087 85426107 -103853447 + (TG)n Simple_repeat Simple_repeat 1 20 0 2657 99 5 3 chr6 85426566 85426940 -103852614 + THE1C LTR MaLR 1 375 0 208 347 42 21 chr6 85426940 85427084 -103852470 + MER5A DNA MER1_type 43 189 0 199 400 0 0 chr6 85427529 85427589 -103851965 - MIR SINE MIR -157 105 46 732 281 109 41 chr6 85427938 85428351 -103851203 - MLT1F LTR MaLR 0 542 102 21 0 0 0 chr6 85429545 85429566 -103849988 + AT_rich Low_complexity Low_complexity 1 21 0 193 340 62 21 chr6 85430082 85430179 -103849375 - MER5A DNA MER1_type -24 165 65 2386 77 0 3 chr6 85430503 85430814 -103848740 - AluY SINE Alu -1 310 1 22 0 0 0 chr6 85431646 85431668 -103847886 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 85432998 85433020 -103846534 + AT_rich Low_complexity Low_complexity 1 22 0 2524 133 41 5 chr6 85433284 85433697 -103845857 - MSTA LTR MaLR 0 428 1 797 83 0 17 chr6 85434115 85434235 -103845319 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 23 0 0 0 chr6 85435407 85435430 -103844124 + AT_rich Low_complexity Low_complexity 1 23 0 225 264 19 0 chr6 85435787 85435840 -103843714 + MIR SINE MIR 98 151 -111 390 253 89 58 chr6 85436198 85436388 -103843166 - MIR SINE MIR -2 260 65 3927 170 35 43 chr6 85437141 85437922 -103841632 - MER52A LTR ERV1 0 1755 982 184 303 211 0 chr6 85439064 85439140 -103840414 - L2 LINE L2 -27 3245 3154 22 0 0 0 chr6 85439556 85439578 -103839976 + AT_rich Low_complexity Low_complexity 1 22 0 203 358 80 31 chr6 85439587 85439749 -103839805 + L2 LINE L2 3142 3311 -2 1123 258 47 11 chr6 85439815 85440179 -103839375 - Charlie7 DNA MER1_type -1891 721 345 1984 176 5 21 chr6 85440182 85440563 -103838991 + THE1C LTR MaLR 1 375 0 259 328 121 51 chr6 85440590 85440846 -103838708 - Charlie7 DNA MER1_type -2335 277 4 2124 110 3 0 chr6 85441128 85441430 -103838124 + AluSp SINE Alu 1 303 0 682 276 134 29 chr6 85443017 85443397 -103836157 - LTR16A LTR ERVL 0 450 31 265 188 0 0 chr6 85445675 85445723 -103833831 + L2 LINE L2 3264 3311 -2 489 285 80 30 chr6 85445887 85446087 -103833467 - MIR SINE MIR -34 228 19 203 245 0 0 chr6 85446485 85446534 -103833020 + (AAATG)n Simple_repeat Simple_repeat 4 52 0 385 271 42 8 chr6 85447760 85447878 -103831676 - MIR SINE MIR -10 252 131 1193 239 0 4 chr6 85448211 85448445 -103831109 + MER8 DNA MER2_type 6 238 -1 1589 217 22 46 chr6 85448658 85449166 -103830388 - L1ME LINE L1 -495 5671 5170 * 1622 241 17 29 chr6 85449161 85449323 -103830231 + L1ME2 LINE L1 5679 5841 -323 1777 253 138 17 chr6 85449323 85449967 -103829587 - MER72 LTR ERV1 0 722 1 1622 241 17 29 chr6 85449967 85450286 -103829268 + L1ME2 LINE L1 5841 6154 -10 24 53 0 0 chr6 85451431 85451469 -103828085 + AT_rich Low_complexity Low_complexity 1 38 0 2176 90 3 10 chr6 85451670 85451969 -103827585 - AluSq SINE Alu -16 297 1 3614 180 106 97 chr6 85451971 85452530 -103827024 - L1MC3 LINE L1 -38 7747 7195 293 276 11 11 chr6 85452530 85452617 -103826937 - MLT1F1 LTR MaLR -442 125 39 3614 180 106 97 chr6 85452617 85453127 -103826427 - L1MC3 LINE L1 -590 7195 6581 640 309 35 52 chr6 85453250 85453711 -103825843 - L1ME LINE L1 -369 5801 5352 250 304 74 14 chr6 85453833 85454094 -103825460 - L1P LINE L1 -1066 5080 4811 4585 199 38 10 chr6 85504805 85506640 -103772914 + L1MB2 LINE L1 4285 6169 -2 22 0 0 0 chr6 85507230 85507252 -103772302 + AT_rich Low_complexity Low_complexity 1 22 0 238 123 0 102 chr6 85508856 85508924 -103770630 + L1MA7 LINE L1 6177 6234 -57 30 0 0 0 chr6 85509130 85509160 -103770394 + AT_rich Low_complexity Low_complexity 1 30 0 6123 95 3 3 chr6 85509160 85510302 -103769252 - L1PA10 LINE L1 -5 6163 5010 376 257 83 21 chr6 85511167 85511311 -103768243 + MLT1J LTR MaLR 15 167 -344 407 249 44 137 chr6 85511314 85511725 -103767829 + HAL1 LINE L1 1033 1396 -1111 1830 152 24 0 chr6 85511725 85512022 -103767532 - AluSx SINE Alu -1 311 8 407 249 44 137 chr6 85512022 85512084 -103767470 + HAL1 LINE L1 1396 1462 -1045 325 261 54 45 chr6 85512183 85512294 -103767260 - MER5A DNA MER1_type -77 112 1 442 284 161 9 chr6 85512303 85512521 -103767033 + HAL1 LINE L1 1541 1791 -716 269 232 0 24 chr6 85512587 85512669 -103766885 + HAL1 LINE L1 2039 2118 -389 266 231 26 0 chr6 85512729 85512807 -103766747 + (TATATG)n Simple_repeat Simple_repeat 4 83 0 251 263 32 83 chr6 85512827 85512983 -103766571 + HAL1 LINE L1 2354 2501 -6 32 75 0 0 chr6 85513570 85513637 -103765917 + AT_rich Low_complexity Low_complexity 1 67 0 666 133 140 17 chr6 85513708 85513898 -103765656 + L1MA6 LINE L1 6065 6277 -23 374 294 37 77 chr6 85513914 85514213 -103765341 - MER46C DNA MER2_type -51 287 1 234 323 115 21 chr6 85514677 85514869 -103764685 - MIR SINE MIR 0 262 53 25 90 0 0 chr6 85515860 85515927 -103763627 + AT_rich Low_complexity Low_complexity 1 67 0 330 291 196 0 chr6 85516582 85516740 -103762814 - MIR SINE MIR 0 262 74 1419 284 180 43 chr6 85516927 85517408 -103762146 + L2 LINE L2 11 425 -2889 2161 108 0 3 chr6 85517408 85517704 -103761850 + AluY SINE Alu 1 295 -16 1419 284 180 43 chr6 85517704 85518131 -103761423 + L2 LINE L2 424 1044 -2270 7449 25 0 0 chr6 85518835 85520105 -103759449 - L1PA3 LINE L1 0 6155 4909 7077 31 0 6 chr6 85520105 85520956 -103758598 + L1PA3 LINE L1 4068 4913 -1233 200 262 0 33 chr6 85522239 85522300 -103757254 + T-rich Low_complexity Low_complexity 3 61 0 285 354 94 26 chr6 85522312 85522504 -103757050 + MIR SINE MIR 40 244 -18 26 109 0 0 chr6 85523205 85523315 -103756239 + AT_rich Low_complexity Low_complexity 1 110 0 340 215 54 65 chr6 85523499 85523592 -103755962 + MER58 DNA MER1_type 2 93 -2327 848 60 0 9 chr6 85523597 85523713 -103755841 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 386 105 18 0 chr6 85523722 85523779 -103755775 + MER58 DNA MER1_type 2363 2420 0 217 326 23 47 chr6 85523794 85523923 -103755631 - L2 LINE L2 0 3313 3188 277 315 154 1 chr6 85524038 85524275 -103755279 - L2 LINE L2 -245 3027 2755 22 0 0 0 chr6 85524508 85524530 -103755024 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr6 85524615 85524653 -103754901 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr6 85525080 85525103 -103754451 + AT_rich Low_complexity Low_complexity 1 23 0 682 268 151 15 chr6 85525790 85526260 -103753294 - HAL1b LINE L1 -88 1260 727 388 343 119 5 chr6 85526265 85526484 -103753070 - HAL1b LINE L1 -671 677 434 420 206 37 52 chr6 85526510 85526646 -103752908 - HAL1b LINE L1 -701 647 514 418 294 37 0 chr6 85527022 85527131 -103752423 - L2 LINE L2 -12 3301 3189 1778 111 12 0 chr6 85527280 85527532 -103752022 + AluSx SINE Alu 33 287 -25 710 231 12 60 chr6 85527592 85527843 -103751711 - HAL1b LINE L1 -884 464 226 458 149 0 0 chr6 85528713 85528780 -103750774 + AluSg/x SINE Alu 218 284 -25 23 0 0 0 chr6 85529203 85529226 -103750328 + AT_rich Low_complexity Low_complexity 1 23 0 235 381 81 0 chr6 85529324 85529484 -103750070 - MIR SINE MIR -42 220 48 433 339 0 0 chr6 85529538 85529653 -103749901 - L2 LINE L2 -13 3300 3186 855 105 23 0 chr6 85529805 85529938 -103749616 + L1M1 LINE L1 5411 5546 -756 556 92 0 0 chr6 85529930 85530006 -103749548 - L1P4 LINE L1 -598 5565 5490 * 974 44 44 15 chr6 85530006 85530142 -103749412 - L1PA5 LINE L1 0 6154 6015 1574 31 5 0 chr6 85530142 85530337 -103749217 + L1P LINE L1 2730 2925 -3221 4209 84 14 2 chr6 85530337 85530922 -103748632 + L1PA13 LINE L1 5568 6159 -4 291 316 57 23 chr6 85530940 85531117 -103748437 - L2 LINE L2 -52 3261 3079 1299 198 4 33 chr6 85531358 85531631 -103747923 + AluJo SINE Alu 1 265 -47 474 327 132 25 chr6 85531878 85532272 -103747282 + MLT1K LTR MaLR 12 447 -141 340 338 88 0 chr6 85532401 85532549 -103747005 + MIR3 SINE MIR 37 197 -11 599 293 27 44 chr6 85533066 85533291 -103746263 + MIR SINE MIR 26 246 -16 270 224 26 13 chr6 85533329 85533405 -103746149 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 22 80 0 0 chr6 85534269 85534319 -103745235 + AT_rich Low_complexity Low_complexity 1 50 0 464 282 13 19 chr6 85535085 85535241 -103744313 - L1MD2 LINE L1 -10 6349 6195 632 287 67 0 chr6 85535243 85535466 -103744088 - L1MD2 LINE L1 -218 6141 5904 4025 196 74 16 chr6 85535475 85536464 -103743090 - L1MDa LINE L1 -4200 2340 1295 4243 147 15 0 chr6 85536466 85537153 -103742401 - L1PA13 LINE L1 -11 6152 5456 322 175 0 228 chr6 85537194 85537308 -103742246 - L1PA13 LINE L1 -6131 656 569 2382 169 12 28 chr6 85537352 85537778 -103741776 - L1PA13 LINE L1 -6221 566 148 515 234 66 0 chr6 85537770 85537937 -103741617 - L1MDa LINE L1 -5225 1318 1141 * 830 150 0 0 chr6 85537937 85538064 -103741490 - FRAM SINE Alu -9 167 41 1911 186 8 8 chr6 85538097 85538478 -103741076 - L1MB1 LINE L1 0 6168 5788 2437 243 51 73 chr6 85538480 85539441 -103740113 - L1MDa LINE L1 -5419 1121 48 22 56 0 0 chr6 85539448 85539484 -103740070 + AT_rich Low_complexity Low_complexity 1 36 0 7631 20 6 0 chr6 85539581 85540655 -103738899 - L1PA3 LINE L1 -12 6143 5069 598 14 0 0 chr6 85540655 85540716 -103738838 + L1PA3 LINE L1 6082 6155 0 24 0 0 0 chr6 85540946 85540970 -103738584 + AT_rich Low_complexity Low_complexity 1 24 0 4817 158 47 26 chr6 85540970 85542202 -103737352 - L1PA16 LINE L1 -9 6157 4912 1423 246 0 52 chr6 85542202 85542273 -103737281 + MLT2C1 LTR ERVL 3 76 -321 2105 125 0 3 chr6 85542273 85542602 -103736952 + AluY SINE Alu 3 311 0 1423 246 0 52 chr6 85542602 85542877 -103736677 + MLT2C1 LTR ERVL 76 332 -65 3270 89 51 8 chr6 85542877 85543369 -103736185 + MER75 DNA T2_type 2 514 0 1423 246 0 52 chr6 85543369 85543387 -103736167 + MLT2C1 LTR ERVL 332 349 -48 286 128 0 25 chr6 85543437 85543505 -103736049 + MLT2C1 LTR ERVL 357 395 -2 253 103 0 64 chr6 85543604 85543682 -103735872 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 243 207 49 24 chr6 85543692 85543774 -103735780 + L1ME LINE L1 4762 4845 -1301 327 290 54 71 chr6 85544026 85544250 -103735304 + L1ME LINE L1 5293 5512 -650 405 0 0 0 chr6 85544878 85544923 -103734631 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 188 359 11 22 chr6 85544952 85545044 -103734510 + MER5A DNA MER1_type 91 181 -8 704 234 13 48 chr6 85545747 85545974 -103733580 + MER20 DNA MER1_type 1 219 0 255 224 0 0 chr6 85547819 85547895 -103731659 + (TA)n Simple_repeat Simple_repeat 2 77 0 207 194 0 0 chr6 85548506 85548542 -103731012 + GA-rich Low_complexity Low_complexity 5 40 0 294 288 268 20 chr6 85548814 85549012 -103730542 - MIR SINE MIR -2 260 14 834 126 33 7 chr6 85549595 85549746 -103729808 + L1MB2 LINE L1 6005 6159 -12 25 65 0 0 chr6 85551527 85551573 -103727981 + AT_rich Low_complexity Low_complexity 1 46 0 213 194 0 0 chr6 85551779 85551815 -103727739 + (TG)n Simple_repeat Simple_repeat 1 36 0 2513 114 14 3 chr6 85552504 85552863 -103726691 - THE1C LTR MaLR -12 363 1 22 35 0 0 chr6 85552902 85552931 -103726623 + AT_rich Low_complexity Low_complexity 1 29 0 707 235 65 25 chr6 85553672 85553872 -103725682 + MER46A DNA MER2_type 29 236 0 1514 226 221 57 chr6 85554421 85554511 -103725043 - L2 LINE L2 -539 2775 2701 2557 38 0 38 chr6 85554511 85554831 -103724723 + AluY SINE Alu 1 308 -3 1514 226 221 57 chr6 85554831 85555395 -103724159 - L2 LINE L2 -613 2701 2013 32589 44 1 1 chr6 85555506 85561606 -103717948 - L1PA4 LINE L1 -44 6111 7 471 288 174 39 chr6 85561706 85562039 -103717515 - L2 LINE L2 -1938 1376 999 296 368 37 18 chr6 85563289 85563452 -103716102 - MER5A DNA MER1_type 0 189 24 27 0 0 0 chr6 85565229 85565256 -103714298 + AT_rich Low_complexity Low_complexity 1 27 0 266 176 0 0 chr6 85565567 85565618 -103713936 - MER2 DNA MER2_type -135 210 160 301 120 0 0 chr6 85565625 85565675 -103713879 + MER2 DNA MER2_type 149 198 -147 580 149 12 155 chr6 85565682 85565843 -103713711 - MER2 DNA MER2_type -200 145 8 23 68 0 0 chr6 85566011 85566055 -103713499 + AT_rich Low_complexity Low_complexity 1 44 0 228 365 81 14 chr6 85566253 85566401 -103713153 - MIR3 SINE MIR -7 201 44 323 345 135 42 chr6 85566404 85566967 -103712587 - L2 LINE L2 -5 3267 2638 203 268 14 42 chr6 85566967 85567038 -103712516 - MER91A DNA MER1_type 0 196 128 293 274 137 10 chr6 85567066 85567168 -103712386 - MER91B DNA MER1_type -60 130 16 318 305 28 71 chr6 85567260 85567401 -103712153 - MIR SINE MIR -65 197 63 194 0 39 0 chr6 85568219 85568245 -103711309 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 408 257 297 0 chr6 85568367 85568542 -103711012 + MIR SINE MIR 14 240 -22 181 255 98 0 chr6 85569114 85569165 -103710389 + L2 LINE L2 3166 3221 -92 529 276 35 30 chr6 85569559 85569758 -103709796 - MLT1K LTR MaLR 0 588 389 4581 177 50 33 chr6 85569896 85571685 -103707869 + L1MA4 LINE L1 4480 6300 0 2428 245 39 9 chr6 85571676 85572439 -103707115 - L1 LINE L1 -2934 4274 3489 * 4758 157 10 9 chr6 85572439 85573750 -103705804 - L1P4 LINE L1 -415 5746 4439 5037 223 33 148 chr6 85573753 85576080 -103703474 - L1 LINE L1 -4788 2421 1 241 231 92 46 chr6 85577739 85577912 -103701642 + L1ME4a LINE L1 5767 5947 -174 238 358 103 34 chr6 85578001 85578467 -103701087 + L2 LINE L2 2372 2869 -445 238 354 48 48 chr6 85578669 85578816 -103700738 + L2 LINE L2 3147 3293 -20 414 284 51 28 chr6 85580338 85580514 -103699040 - MIR SINE MIR -19 243 64 2414 55 10 0 chr6 85580593 85580884 -103698670 + AluY SINE Alu 3 296 -15 21 57 0 0 chr6 85580982 85581017 -103698537 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 85581466 85581487 -103698067 + AT_rich Low_complexity Low_complexity 1 21 0 1569 204 22 10 chr6 85582062 85582375 -103697179 - MER58B DNA MER1_type 0 341 25 22 35 0 0 chr6 85584796 85584825 -103694729 + AT_rich Low_complexity Low_complexity 1 29 0 202 336 115 18 chr6 85586528 85586641 -103692913 - L2 LINE L2 -482 2832 2709 216 316 40 0 chr6 85586958 85587034 -103692520 - L2 LINE L2 -13 3300 3222 2176 78 0 34 chr6 85587195 85587488 -103692066 + AluY SINE Alu 27 309 -2 264 292 67 0 chr6 85587620 85587709 -103691845 - L2 LINE L2 -15 3298 3204 188 67 33 0 chr6 85587985 85588015 -103691539 + (GA)n Simple_repeat Simple_repeat 2 32 0 1066 237 5 0 chr6 85589465 85589680 -103689874 - MER58A DNA MER1_type 0 224 9 270 324 0 37 chr6 85589701 85589809 -103689745 - MER5A DNA MER1_type -6 183 80 1044 240 146 92 chr6 85590532 85590691 -103688863 + Charlie2b DNA MER1_type 12 161 -2621 625 173 207 20 chr6 85590691 85590841 -103688713 + MER45A DNA AcHobo 1 178 0 1044 240 146 92 chr6 85590841 85591310 -103688244 + Charlie2b DNA MER1_type 161 674 -2108 326 259 76 19 chr6 85591426 85591584 -103687970 + Charlie2a DNA MER1_type 1472 1638 -1224 204 270 16 32 chr6 85591584 85591647 -103687907 - L2 LINE L2 -6 3266 3205 485 155 20 20 chr6 85591647 85591847 -103687707 + GA-rich Low_complexity Low_complexity 1 200 0 204 230 54 40 chr6 85591847 85591921 -103687633 - L2 LINE L2 -81 3232 3158 14397 157 13 16 chr6 85591951 85594495 -103685059 - L1P3 LINE L1 -2620 3841 1243 216 111 0 0 chr6 85594495 85594531 -103685023 + (TTG)n Simple_repeat Simple_repeat 1 36 0 14397 157 13 16 chr6 85594531 85595770 -103683784 - L1P3 LINE L1 -5218 1243 2 834 205 92 4 chr6 85595779 85596008 -103683546 + Charlie2 DNA MER1_type 2612 2860 -2 2504 99 16 16 chr6 85597246 85597621 -103681933 - THE1C LTR MaLR 0 375 1 9785 132 48 6 chr6 85597621 85599137 -103680417 - THE1C-int LTR MaLR 0 1580 1 2202 148 5 16 chr6 85599137 85599516 -103680038 - THE1C LTR MaLR 0 375 1 24 32 0 0 chr6 85599931 85599962 -103679592 + AT_rich Low_complexity Low_complexity 1 31 0 2062 137 7 0 chr6 85600925 85601232 -103678322 - AluSx SINE Alu -3 309 1 2047 143 19 56 chr6 85602721 85603099 -103676455 + THE1B LTR MaLR 1 364 0 278 314 38 19 chr6 85604038 85604143 -103675411 - L2 LINE L2 0 3313 3207 2005 176 29 12 chr6 85604155 85604571 -103674983 - L1PA13 LINE L1 -900 5246 4824 4662 122 31 65 chr6 85604574 85605516 -103674038 + L1PA13 LINE L1 5254 6163 0 575 314 59 56 chr6 85605609 85606001 -103673553 + MLT1L LTR MaLR 219 611 -4 191 254 36 0 chr6 85606136 85606191 -103673363 - L2 LINE L2 -300 2972 2916 869 283 77 37 chr6 85606253 85606769 -103672785 + L2 LINE L2 2714 3258 -55 5392 131 5 10 chr6 85607110 85607972 -103671582 + L1PA13 LINE L1 5307 6163 0 238 370 8 8 chr6 85607988 85608115 -103671439 - L2 LINE L2 -635 2679 2553 1310 179 0 4 chr6 85608221 85608450 -103671104 + AluJb SINE Alu 85 312 0 231 103 0 0 chr6 85608455 85608494 -103671060 + (A)n Simple_repeat Simple_repeat 1 39 0 591 272 49 53 chr6 85608865 85609108 -103670446 - MIR SINE MIR -13 249 8 245 272 272 29 chr6 85609407 85609580 -103669974 - MIR SINE MIR -25 237 23 2545 34 0 21 chr6 85609779 85610104 -103669450 - L1PA4 LINE L1 -2 6153 5836 376 296 79 31 chr6 85612339 85612641 -103666913 + MLT1H LTR MaLR 114 536 -13 4485 103 0 2 chr6 85612758 85613390 -103666164 + L1PA13 LINE L1 5523 6153 -10 228 288 50 12 chr6 85615925 85616005 -103663549 + MIR3 SINE MIR 119 201 -7 280 333 162 30 chr6 85616598 85616796 -103662758 + MIR SINE MIR 16 239 -23 1000 249 9 0 chr6 85616861 85617082 -103662472 - MER58A DNA MER1_type -1 223 1 235 250 0 0 chr6 85618976 85619040 -103660514 + Charlie8 DNA MER1_type 84 147 -2270 21 36 0 0 chr6 85619552 85619580 -103659974 + AT_rich Low_complexity Low_complexity 1 28 0 233 274 0 0 chr6 85620632 85620683 -103658871 + (TG)n Simple_repeat Simple_repeat 1 51 0 204 333 12 24 chr6 85620831 85620915 -103658639 + L2 LINE L2 3227 3309 -4 2464 53 7 3 chr6 85620927 85621229 -103658325 + AluY SINE Alu 1 303 -8 363 278 113 9 chr6 85621495 85621610 -103657944 - L2 LINE L2 -1 3312 3186 189 147 0 0 chr6 85621612 85621646 -103657908 + (TTATA)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chr6 85621676 85621706 -103657848 + AT_rich Low_complexity Low_complexity 1 30 0 194 150 25 0 chr6 85621754 85621794 -103657760 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 393 353 128 8 chr6 85621804 85622141 -103657413 - L2 LINE L2 -177 3136 2759 414 266 139 29 chr6 85622251 85622424 -103657130 - L2 LINE L2 -1317 1997 1806 594 250 60 40 chr6 85622833 85623033 -103656521 + MER63A DNA MER1_type 4 207 -3 252 330 37 28 chr6 85623063 85623172 -103656382 + L2 LINE L2 3203 3312 -1 364 335 146 20 chr6 85623221 85623522 -103656032 + L2 LINE L2 2953 3291 -22 183 244 0 0 chr6 85623991 85624032 -103655522 + L2 LINE L2 2933 2973 -299 180 338 46 73 chr6 85624117 85624268 -103655286 - L2 LINE L2 -2 3270 3124 2274 15 0 8 chr6 85625733 85626001 -103653553 + L1PA2 LINE L1 5890 6155 0 24 32 0 0 chr6 85626080 85626111 -103653443 + AT_rich Low_complexity Low_complexity 1 31 0 315 264 56 35 chr6 85626841 85626985 -103652569 - L1M4 LINE L1 -373 5811 5665 37 23 0 0 chr6 85627015 85627059 -103652495 + AT_rich Low_complexity Low_complexity 1 44 0 384 299 54 30 chr6 85627113 85627280 -103652274 - L1M4 LINE L1 -434 5687 5517 542 299 163 17 chr6 85627304 85627592 -103651962 - L2 LINE L2 -16 3297 2968 13657 164 13 23 chr6 85627635 85628343 -103651211 - L1MA1 LINE L1 -7 7714 7000 3130 107 27 0 chr6 85628343 85628784 -103650770 - MLT2A2 LTR ERVL 0 453 1 13657 164 13 23 chr6 85628784 85631173 -103648381 - L1MA1 LINE L1 -721 7000 4664 885 116 22 0 chr6 85631173 85631311 -103648243 + L1MA9 LINE L1 6172 6312 0 13657 164 13 23 chr6 85631311 85632191 -103647363 - L1MA1 LINE L1 -3057 4664 3777 11320 199 31 8 chr6 85632179 85634293 -103645261 - L1MA1 LINE L1 -5382 2183 23 * 901 287 46 98 chr6 85634294 85634535 -103645019 - L2 LINE L2 -340 2974 2771 1931 154 27 57 chr6 85634535 85634937 -103644617 - MLT1B LTR MaLR 0 390 1 901 287 46 98 chr6 85634937 85635194 -103644360 - L2 LINE L2 -543 2771 2502 244 270 14 14 chr6 85635453 85635527 -103644027 - L1M4 LINE L1 -2006 4140 4067 351 214 143 0 chr6 85635605 85635731 -103643823 + MER103 DNA DNA 18 161 -5 253 294 63 28 chr6 85635950 85636205 -103643349 - L1M4 LINE L1 -2237 3909 3646 21 0 0 0 chr6 85636402 85636423 -103643131 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr6 85636622 85636672 -103642882 + AT_rich Low_complexity Low_complexity 1 50 0 52 0 0 0 chr6 85636862 85636914 -103642640 + AT_rich Low_complexity Low_complexity 1 52 0 27 29 0 0 chr6 85637096 85637130 -103642424 + AT_rich Low_complexity Low_complexity 1 34 0 809 264 27 14 chr6 85637584 85637804 -103641750 - MER58A DNA MER1_type 0 224 2 40 21 0 0 chr6 85638647 85638694 -103640860 + AT_rich Low_complexity Low_complexity 1 47 0 1018 173 117 0 chr6 85638703 85638900 -103640654 - MLT1D LTR MaLR -2 503 284 1461 203 108 61 chr6 85638901 85639460 -103640094 + LTR1B LTR ERV1 1 660 -278 589 249 126 56 chr6 85639495 85639764 -103639790 - MLT1D LTR MaLR -332 294 7 521 281 129 24 chr6 85639954 85640164 -103639390 + MIR SINE MIR 12 243 -19 2216 135 41 29 chr6 85640900 85641314 -103638240 - L1MA9 LINE L1 0 6312 5894 411 258 55 55 chr6 85641735 85641917 -103637637 - MIR SINE MIR -66 196 15 216 86 0 0 chr6 85643134 85643169 -103636385 + (T)n Simple_repeat Simple_repeat 1 35 0 216 163 0 0 chr6 85644299 85644342 -103635212 + T-rich Low_complexity Low_complexity 1 43 0 1438 157 55 4 chr6 85644343 85644578 -103634976 - AluSq SINE Alu -66 247 1 21 0 0 0 chr6 85644988 85645009 -103634545 + AT_rich Low_complexity Low_complexity 1 21 0 297 275 22 80 chr6 85645012 85645150 -103634404 - MIR SINE MIR -51 211 82 296 333 59 0 chr6 85645173 85645275 -103634279 - L2 LINE L2 0 3313 3206 391 215 46 46 chr6 85645355 85645485 -103634069 + MER94 DNA DNA 5 134 0 2752 125 24 0 chr6 85645559 85645983 -103633571 + L1PA15 LINE L1 5730 6163 -2 340 329 87 31 chr6 85646098 85646488 -103633066 - MLT1L LTR MaLR -9 606 168 802 75 0 0 chr6 85646497 85646604 -103632950 + MLT2A2 LTR ERVL 1 107 -346 389 154 0 13 chr6 85646646 85646724 -103632830 + (TG)n Simple_repeat Simple_repeat 2 78 0 310 293 14 95 chr6 85647917 85648064 -103631490 + L1ME LINE L1 5446 5580 -541 312 309 60 30 chr6 85648338 85648506 -103631048 - L1M LINE L1 -2381 5427 5255 263 316 28 49 chr6 85649512 85649759 -103629795 - L1M4 LINE L1 -1995 4151 3910 21 36 0 0 chr6 85649801 85649829 -103629725 + AT_rich Low_complexity Low_complexity 1 28 0 468 253 68 84 chr6 85649844 85650017 -103629537 - MLT1G1 LTR MaLR -14 581 412 1946 215 27 80 chr6 85650017 85650602 -103628952 + MLT2B3 LTR ERVL 1 554 0 468 253 68 84 chr6 85650602 85650665 -103628889 - MLT1G1 LTR MaLR -183 412 349 183 316 90 30 chr6 85650691 85650824 -103628730 + L2 LINE L2 2694 2834 -480 490 218 45 0 chr6 85650946 85651056 -103628498 + MER94 DNA DNA 4 118 -16 25 0 0 0 chr6 85653056 85653081 -103626473 + AT_rich Low_complexity Low_complexity 1 25 0 2652 131 50 50 chr6 85653182 85653678 -103625876 + LTR43 LTR ERV1 32 527 -75 705 247 40 28 chr6 85653726 85654113 -103625441 + MLT1J2 LTR MaLR 26 450 0 2161 212 42 23 chr6 85655093 85655660 -103623894 + L1MC3 LINE L1 7207 7784 -1 23 0 0 0 chr6 85655789 85655812 -103623742 + AT_rich Low_complexity Low_complexity 1 23 0 2948 195 27 0 chr6 85658452 85658971 -103620583 + MLT2B3 LTR ERVL 3 535 -19 440 99 14 0 chr6 85658971 85659042 -103620512 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 1412 214 77 89 chr6 85659044 85659604 -103619950 - MLT2B3 LTR ERVL 0 554 2 8602 96 18 2 chr6 85659605 85660786 -103618768 - HERVL-B3 LTR ERVL 0 5654 4455 2673 116 28 0 chr6 85660786 85661174 -103618380 + MLT2A1 LTR ERVL 1 399 -45 207 0 0 0 chr6 85661227 85661250 -103618304 + (TC)n Simple_repeat Simple_repeat 2 24 0 858 70 0 0 chr6 85661296 85661410 -103618144 + (TA)n Simple_repeat Simple_repeat 2 115 0 297 50 0 0 chr6 85661410 85661450 -103618104 + MLT2A1 LTR ERVL 405 444 0 31684 85 6 1 chr6 85661450 85665811 -103613743 + HERVL-A1 LTR ERVL 1 4382 -1272 7534 232 23 6 chr6 85665811 85667529 -103612025 - L1M1 LINE L1 -5805 1760 15 31 0 0 0 chr6 85668361 85668392 -103611162 + AT_rich Low_complexity Low_complexity 1 31 0 2101 134 67 3 chr6 85668526 85668868 -103610686 + THE1B LTR MaLR 1 364 0 7440 202 40 23 chr6 85670077 85671747 -103607807 + L1MA1 LINE L1 15 1712 -5853 2855 104 2 26 chr6 85671750 85672248 -103607306 + L1MA1 LINE L1 2695 3180 -4385 5404 108 17 23 chr6 85672251 85673151 -103606403 + L1MA1 LINE L1 6818 7711 -10 1539 51 30 0 chr6 85673524 85673721 -103605833 + L1PA2 LINE L1 5950 6152 -3 206 73 55 18 chr6 85673730 85673785 -103605769 + A-rich Low_complexity Low_complexity 4 60 0 22 0 0 0 chr6 85673810 85673832 -103605722 + AT_rich Low_complexity Low_complexity 1 22 0 460 233 89 7 chr6 85674428 85674574 -103604980 - MIR SINE MIR 0 262 105 2559 75 0 0 chr6 85674696 85675004 -103604550 + AluY SINE Alu 1 308 -3 2103 131 54 17 chr6 85675247 85675597 -103603957 + THE1B LTR MaLR 1 363 -1 11155 107 21 1 chr6 85675598 85677147 -103602407 + THE1B-int LTR MaLR 1 1580 0 1777 152 68 42 chr6 85677147 85677502 -103602052 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr6 85677542 85677565 -103601989 + AT_rich Low_complexity Low_complexity 1 23 0 247 312 147 19 chr6 85677574 85677731 -103601823 + MER5B DNA MER1_type 1 177 -1 726 12 0 0 chr6 85677981 85678064 -103601490 + (TA)n Simple_repeat Simple_repeat 1 83 0 2797 97 5 0 chr6 85678101 85678503 -103601051 - MLT2A1 LTR ERVL -40 404 1 35018 88 9 8 chr6 85678503 85683468 -103596086 - HERVL-A1-A1 LTR ERVL 0 5654 682 5071 86 14 7 chr6 85683458 85684180 -103595374 - HERVL-A1-A1 LTR ERVL -4873 781 55 * 339 25 0 0 chr6 85684180 85684220 -103595334 + (TA)n Simple_repeat Simple_repeat 2 41 0 2833 69 3 0 chr6 85684221 85684597 -103594957 - MLT2A1 LTR ERVL -67 377 1 365 280 47 7 chr6 85685128 85685278 -103594276 - MER103 DNA DNA -3 163 8 26 50 0 0 chr6 85685571 85685611 -103593943 + AT_rich Low_complexity Low_complexity 1 40 0 27 49 0 0 chr6 85685854 85685895 -103593659 + AT_rich Low_complexity Low_complexity 1 41 0 4676 17 0 0 chr6 85687521 85688056 -103591498 + L1PA2 LINE L1 5620 6154 -1 39 0 0 0 chr6 85688106 85688145 -103591409 + AT_rich Low_complexity Low_complexity 1 39 0 3724 146 34 19 chr6 85688155 85688173 -103591381 - L1MA8 LINE L1 -14 6277 6261 2131 161 3 0 chr6 85688173 85688534 -103591020 + MER47A DNA MER2_type 4 365 -1 3724 146 34 19 chr6 85688534 85689256 -103590298 - L1MA8 LINE L1 -30 6261 5526 7749 208 32 22 chr6 85689257 85691065 -103588489 - L1P LINE L1 -977 5169 3336 315 0 0 0 chr6 85691065 85691100 -103588454 + (TA)n Simple_repeat Simple_repeat 1 35 0 7749 208 32 22 chr6 85691100 85691361 -103588193 - L1P LINE L1 -2810 3336 3079 265 308 39 19 chr6 85691365 85691469 -103588085 - L1PA13 LINE L1 -5893 894 789 816 272 16 13 chr6 85691476 85691789 -103587765 + L1 LINE L1 2284 2597 -3549 2697 257 27 43 chr6 85691822 85692612 -103586942 - L1PA13 LINE L1 -6010 777 1 2680 229 50 21 chr6 85692617 85693628 -103585926 - L1 LINE L1 -3104 4461 3425 349 163 62 0 chr6 85693619 85693699 -103585855 - L1 LINE L1 -2631 3515 3431 * 1326 235 14 14 chr6 85693750 85694044 -103585510 - AluJo SINE Alu -18 294 1 571 267 73 6 chr6 85694363 85694528 -103585026 + MIR SINE MIR 36 211 -51 1924 62 4 12 chr6 85694647 85694903 -103584651 - L1PA5 LINE L1 -1 6153 5900 267 148 19 0 chr6 85694903 85694957 -103584597 + L1PA5 LINE L1 5865 5919 -236 213 192 0 77 chr6 85694968 85695020 -103584534 - MIR SINE MIR -10 252 205 201 244 0 0 chr6 85695433 85695478 -103584076 + (TG)n Simple_repeat Simple_repeat 2 46 0 556 99 44 0 chr6 85696156 85696247 -103583307 + AluSc SINE Alu 1 95 -214 9649 163 34 10 chr6 85696408 85697804 -103581750 + L1MA3 LINE L1 3252 4613 -1692 2038 85 75 10 chr6 85697804 85698098 -103581456 + AluSp SINE Alu 1 313 0 9649 163 34 10 chr6 85698098 85699684 -103579870 + L1MA3 LINE L1 4613 6305 0 363 351 23 7 chr6 85699756 85700055 -103579499 + L1MC4a LINE L1 5584 5887 -1921 525 120 0 0 chr6 85701237 85701312 -103578242 - MSTA LTR MaLR -353 75 1 34 42 0 0 chr6 85701440 85701488 -103578066 + AT_rich Low_complexity Low_complexity 1 48 0 41 0 0 0 chr6 85701599 85701640 -103577914 + AT_rich Low_complexity Low_complexity 1 41 0 637 162 18 9 chr6 85701640 85701751 -103577803 - MLT1D LTR MaLR -80 425 314 239 310 14 0 chr6 85701752 85701823 -103577731 + CT-rich Low_complexity Low_complexity 3 74 0 257 213 50 25 chr6 85701823 85701913 -103577641 - MLT1D LTR MaLR -183 322 247 581 199 11 78 chr6 85702033 85702224 -103577330 - MLT1D LTR MaLR -327 178 1 1031 198 88 90 chr6 85702224 85702658 -103576896 + LTR54B LTR ERV1 1 433 -65 3940 88 15 2 chr6 85703437 85704027 -103575527 - L1PA7 LINE L1 -1357 4789 4192 2603 90 8 2 chr6 85704025 85704427 -103575127 + L1PA7 LINE L1 4787 5190 -956 * 4986 47 20 19 chr6 85704437 85705216 -103574338 + L1PA7 LINE L1 5254 6003 -128 513 198 0 0 chr6 85705229 85705340 -103574214 - L1MA6 LINE L1 -238 6062 5952 * 1299 75 0 0 chr6 85705333 85705521 -103574033 - L1P LINE L1 -951 5195 5008 794 92 42 0 chr6 85705521 85705639 -103573915 + L1PA7 LINE L1 6015 6138 -16 292 121 0 30 chr6 85705642 85705708 -103573846 + (TA)n Simple_repeat Simple_repeat 1 64 0 393 192 10 10 chr6 85705763 85705862 -103573692 - L1MA6 LINE L1 0 7719 7621 7457 211 42 22 chr6 85705865 85706211 -103573343 - L1MA6 LINE L1 -194 7525 7187 13734 36 0 0 chr6 85706211 85708645 -103570909 - L1PA2 LINE L1 -5 6150 3717 7457 211 42 22 chr6 85708645 85710696 -103568858 - L1MA6 LINE L1 -532 7187 5082 5052 209 60 27 chr6 85711214 85712524 -103567030 - L1MA6 LINE L1 -2472 5093 3697 1230 123 17 0 chr6 85712524 85712703 -103566851 - L1PA10 LINE L1 -13 6155 5974 5052 209 60 27 chr6 85712703 85713349 -103566205 - L1MA6 LINE L1 -3868 3697 3074 1982 198 48 24 chr6 85713358 85713773 -103565781 + Tigger2a DNA MER2_type 10 434 0 5765 257 43 34 chr6 85713773 85716137 -103563417 - L1MA6 LINE L1 -4490 3075 12 23 33 0 0 chr6 85716480 85716510 -103563044 + AT_rich Low_complexity Low_complexity 1 30 0 308 204 52 99 chr6 85716630 85716821 -103562733 - HAL1b LINE L1 -430 918 737 1226 300 62 87 chr6 85717018 85717628 -103561926 + MLT1G LTR MaLR 1 590 0 325 260 108 80 chr6 85718332 85718582 -103560972 + L1ME3A LINE L1 886 1142 -4903 197 180 20 0 chr6 85718590 85718640 -103560914 + (TA)n Simple_repeat Simple_repeat 2 52 0 269 213 65 84 chr6 85718858 85719013 -103560541 + L1ME3A LINE L1 1485 1636 -4918 382 270 61 32 chr6 85719177 85719455 -103560099 + L1ME3A LINE L1 1687 2167 -4578 483 321 84 32 chr6 85719470 85719875 -103559679 + L1ME3A LINE L1 2228 2653 -4092 21 36 0 0 chr6 85719891 85719919 -103559635 + AT_rich Low_complexity Low_complexity 1 28 0 630 303 113 15 chr6 85720007 85720877 -103558677 + L1ME3A LINE L1 2800 3754 -2810 680 283 71 32 chr6 85720878 85721344 -103558210 + L1ME3A LINE L1 3801 4284 -2280 398 304 56 101 chr6 85721369 85721675 -103557879 - LTR16C LTR ERVL -156 335 44 826 291 82 51 chr6 85721711 85721883 -103557671 + L1ME3A LINE L1 4907 5072 -1492 806 166 45 0 chr6 85721883 85722040 -103557514 + L1MB1 LINE L1 6000 6163 -5 826 291 82 51 chr6 85722040 85722297 -103557257 + L1ME3A LINE L1 5072 5320 -1244 14806 37 8 27 chr6 85722297 85724916 -103554638 + L1PA5 LINE L1 3557 6154 0 826 291 82 51 chr6 85724916 85725353 -103554201 + L1ME3A LINE L1 5320 5801 -763 414 206 22 9 chr6 85725355 85725583 -103553971 + (TA)n Simple_repeat Simple_repeat 1 231 0 412 305 119 42 chr6 85725656 85726017 -103553537 + L1ME3A LINE L1 6191 6579 -9 201 171 24 0 chr6 85726213 85726254 -103553300 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 6418 171 41 32 chr6 85727968 85729283 -103550271 + L1MC1 LINE L1 12 1338 -5088 36477 41 27 6 chr6 85729283 85730535 -103549019 - L1PA3 LINE L1 0 6155 4930 309 36 55 0 chr6 85730535 85730590 -103548964 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 6212 48 12 3 chr6 85730591 85731322 -103548232 - SVA Other Other -18 1368 631 36477 41 27 6 chr6 85731322 85735525 -103544029 - L1PA3 LINE L1 -1224 4931 580 817 31 0 0 chr6 85735494 85735591 -103543963 - L1PA3 LINE L1 -6048 98 2 * 1035 189 80 8 chr6 85735592 85735856 -103543698 + L1MC1 LINE L1 1325 1607 -4819 857 253 27 4 chr6 85735895 85736120 -103543434 + L1M4 LINE L1 3503 3732 -2414 * 5384 149 21 64 chr6 85736113 85737229 -103542325 + L1MC1 LINE L1 5509 6577 -36 872 194 5 68 chr6 85737231 85737453 -103542101 + MLT1B LTR MaLR 137 344 -46 246 105 0 0 chr6 85737735 85737773 -103541781 + (CA)n Simple_repeat Simple_repeat 2 39 0 318 264 233 16 chr6 85738023 85738152 -103541402 + MIR SINE MIR 14 170 -92 27 62 0 0 chr6 85738806 85738854 -103540700 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr6 85739044 85739068 -103540486 + AT_rich Low_complexity Low_complexity 1 24 0 3120 206 15 14 chr6 85739195 85739844 -103539710 - MER82 DNA MER2_type -1 652 3 647 125 19 0 chr6 85740419 85740593 -103538961 + HSAT4 Satellite centromeric 1 177 -19 34 55 0 0 chr6 85741232 85741287 -103538267 + AT_rich Low_complexity Low_complexity 1 55 0 310 236 189 75 chr6 85741390 85741602 -103537952 - L2 LINE L2 -17 3296 3061 466 289 181 10 chr6 85741782 85741986 -103537568 - MIR SINE MIR -9 253 15 27 49 0 0 chr6 85742779 85742820 -103536734 + AT_rich Low_complexity Low_complexity 1 41 0 188 384 35 0 chr6 85743075 85743161 -103536393 - L2 LINE L2 -14 3258 3170 543 325 90 43 chr6 85743508 85743884 -103535670 + L2 LINE L2 2920 3313 0 300 280 53 0 chr6 85743926 85744001 -103535553 - L2 LINE L2 0 3272 3194 25 0 0 0 chr6 85744163 85744188 -103535366 + AT_rich Low_complexity Low_complexity 1 25 0 2935 102 20 20 chr6 85744191 85744643 -103534911 - L1PA13 LINE L1 -4 6159 5708 2198 104 13 34 chr6 85744643 85745085 -103534469 + L1P4 LINE L1 5156 5592 -571 3917 58 17 0 chr6 85745508 85745990 -103533564 - LTR2B LTR ERV1 0 490 1 23787 122 13 5 chr6 85745990 85749507 -103530047 - Harlequin LTR ERV1 -1 6895 3352 6537 67 22 9 chr6 85749506 85750496 -103529058 - Harlequin LTR ERV1 -4322 2574 1572 * 4528 76 16 22 chr6 85750481 85751127 -103528427 - Harlequin LTR ERV1 -5993 903 262 * 2632 95 8 3 chr6 85751122 85751500 -103528054 - Harlequin LTR ERV1 -6516 380 1 * 3938 48 23 0 chr6 85751500 85751979 -103527575 - LTR2B LTR ERV1 0 490 1 1027 254 25 18 chr6 85752416 85752743 -103526811 + L1MDb LINE L1 749 1077 -5332 2090 375 91 21 chr6 85752757 85753604 -103525950 + L1PA13 LINE L1 1 906 -5881 4900 250 25 10 chr6 85753605 85754979 -103524575 + L1PA13 LINE L1 1095 2503 -4294 4405 52 25 2 chr6 85754985 85755545 -103524009 + L1PA7 LINE L1 5581 6153 -1 1502 249 40 11 chr6 85755574 85755952 -103523602 + L1M1 LINE L1 17 405 -7160 * 6229 161 51 25 chr6 85755948 85756226 -103523328 + L1MA2 LINE L1 4063 4332 -1972 4025 108 20 18 chr6 85756226 85756825 -103522729 + MER4A LTR ERV1 1 600 0 6229 161 51 25 chr6 85756825 85758728 -103520826 + L1MA2 LINE L1 4332 6300 -4 1567 209 42 0 chr6 85758741 85759099 -103520455 + L1PA13 LINE L1 2495 2867 -3930 * 3257 41 11 11 chr6 85759094 85759541 -103520013 - L1PA7 LINE L1 -495 5659 5213 3820 60 4 0 chr6 85759541 85760023 -103519531 + L1PA7 LINE L1 5657 6143 -11 604 312 0 0 chr6 85760574 85760728 -103518826 + MIR SINE MIR 2 155 -107 618 210 28 61 chr6 85760746 85760927 -103518627 - L1PA13 LINE L1 -5886 901 727 2038 102 14 11 chr6 85761911 85762195 -103517359 + AluSg1 SINE Alu 2 286 -23 2177 105 0 0 chr6 85763506 85763791 -103515763 - AluSc SINE Alu -24 285 1 2083 198 32 42 chr6 85763913 85764417 -103515137 + MLT1D LTR MaLR 1 499 -6 336 169 65 0 chr6 85765594 85765671 -103513883 - LTR50 LTR ERVL -7 788 707 2155 121 39 36 chr6 85819207 85819570 -103459984 + THE1B LTR MaLR 1 364 0 562 113 0 0 chr6 85819570 85819650 -103459904 + THE1B-int LTR MaLR 1 80 -1500 3260 142 43 25 chr6 85819750 85820307 -103459247 + MER4E LTR ERV1 85 651 -128 2438 73 0 0 chr6 85820308 85820608 -103458946 + AluY SINE Alu 1 300 -11 279 297 0 10 chr6 85820938 85821039 -103458515 - L1ME LINE L1 -297 5873 5774 631 162 51 17 chr6 85821560 85821677 -103457877 - MER5B DNA MER1_type -19 159 39 2115 128 0 0 chr6 85821678 85821968 -103457586 + AluSx SINE Alu 1 290 -22 236 200 0 36 chr6 85821991 85822046 -103457508 - MER5B DNA MER1_type -125 53 1 849 274 131 52 chr6 85822634 85823091 -103456463 - MLT1J LTR MaLR -6 505 13 341 336 28 0 chr6 85823093 85823200 -103456354 - L2 LINE L2 -969 2345 2236 454 265 54 14 chr6 85823247 85823394 -103456160 + MLT1J LTR MaLR 5 157 -354 486 0 0 0 chr6 85823406 85823460 -103456094 + (TA)n Simple_repeat Simple_repeat 1 54 0 581 132 0 0 chr6 85823461 85823552 -103456002 - AluJb SINE Alu -17 295 205 1877 122 3 101 chr6 85824297 85824625 -103454929 - AluSq SINE Alu -17 296 1 1196 169 87 0 chr6 85824967 85825221 -103454333 + MER31A LTR ERV1 210 485 0 487 212 10 0 chr6 85825223 85825322 -103454232 - Charlie8 DNA MER1_type -2209 208 109 1343 117 0 0 chr6 85825333 85825521 -103454033 - AluSp SINE Alu -5 308 121 268 330 80 0 chr6 85825534 85825634 -103453920 - Charlie8 DNA MER1_type -2309 108 1 399 254 279 25 chr6 85825674 85825875 -103453679 + MIR SINE MIR 11 262 0 28866 51 5 11 chr6 85826387 85830156 -103449398 - L1P LINE L1 -943 5203 1458 1913 100 0 0 chr6 85830312 85830573 -103448981 - L1P LINE L1 -5885 261 1 716 263 50 6 chr6 85830745 85830924 -103448630 + MER5A DNA MER1_type 2 188 -1 616 216 124 60 chr6 85831294 85831512 -103448042 + MIR SINE MIR 18 249 -13 25 51 0 0 chr6 85831957 85831996 -103447558 + AT_rich Low_complexity Low_complexity 1 39 0 6198 103 13 13 chr6 85832036 85833493 -103446061 - L1PA11 LINE L1 0 6174 4709 954 206 0 0 chr6 85833694 85833849 -103445705 + AluJb SINE Alu 132 286 -26 31 26 0 0 chr6 85833855 85833893 -103445661 + AT_rich Low_complexity Low_complexity 1 38 0 197 222 139 69 chr6 85834793 85834865 -103444689 - MIR SINE MIR -21 241 165 * 475 286 73 0 chr6 85834864 85835042 -103444512 + MIR SINE MIR 51 241 -21 2864 164 21 2 chr6 85835097 85835626 -103443928 - L1PB4 LINE L1 -3 6153 5615 22 56 0 0 chr6 85836310 85836346 -103443208 + AT_rich Low_complexity Low_complexity 1 36 0 9602 28 3 0 chr6 85836512 85837677 -103441877 + L1P LINE L1 4193 5361 -785 1395 219 30 9 chr6 85837677 85837998 -103441556 - MER31A LTR ERV1 -139 327 1 24 0 0 0 chr6 85838027 85838051 -103441503 + AT_rich Low_complexity Low_complexity 1 24 0 29 47 0 0 chr6 85838335 85838378 -103441176 + AT_rich Low_complexity Low_complexity 1 43 0 277 296 12 31 chr6 85838788 85838989 -103440565 + CT-rich Low_complexity Low_complexity 1 197 0 2956 22 0 0 chr6 85839598 85840120 -103439434 - L1PA3 LINE L1 -591 5564 5043 5229 18 0 2 chr6 85840120 85840739 -103438815 + L1PA3 LINE L1 5554 6155 0 357 24 0 0 chr6 85841790 85841832 -103437722 + (T)n Simple_repeat Simple_repeat 1 42 0 15202 83 3 3 chr6 85841927 85844021 -103435533 + L1P LINE L1 526 2619 -3527 5509 186 55 15 chr6 85844451 85844796 -103434758 + L1MA5A LINE L1 4611 4941 -1356 2225 99 14 0 chr6 85844796 85845089 -103434465 - AluSp SINE Alu -16 297 1 5509 186 55 15 chr6 85845089 85846356 -103433198 + L1MA5A LINE L1 4941 6297 0 276 399 101 6 chr6 85846809 85846967 -103432587 - MIR3 SINE MIR -17 191 19 631 211 37 43 chr6 85847970 85848131 -103431423 - MER82 DNA MER2_type 0 653 494 186 189 0 0 chr6 85848148 85848185 -103431369 + (CA)n Simple_repeat Simple_repeat 1 37 0 873 234 25 15 chr6 85848185 85848386 -103431168 - MER82 DNA MER2_type -450 203 1 198 103 0 0 chr6 85848386 85848415 -103431139 + (TA)n Simple_repeat Simple_repeat 2 30 0 505 324 81 29 chr6 85849509 85850047 -103429507 + L2 LINE L2 2739 3304 -9 27 29 0 0 chr6 85851478 85851512 -103428042 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr6 85852533 85852562 -103426992 + AT_rich Low_complexity Low_complexity 1 29 0 255 31 0 0 chr6 85853408 85853440 -103426114 + (CA)n Simple_repeat Simple_repeat 1 32 0 406 296 14 14 chr6 85853937 85854079 -103425475 + Charlie2 DNA MER1_type 6 147 -2715 262 240 130 20 chr6 85854117 85854217 -103425337 + L1MEc LINE L1 538 648 -5748 207 0 0 0 chr6 85854363 85854386 -103425168 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 339 25 0 0 chr6 85854385 85854425 -103425129 + (TA)n Simple_repeat Simple_repeat 1 40 0 338 253 154 58 chr6 85854546 85854838 -103424716 - L1MC/D LINE L1 -2123 5685 5366 1419 170 72 15 chr6 85854840 85855125 -103424429 + AluJo SINE Alu 3 302 0 214 24 0 73 chr6 85855259 85855300 -103424254 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 7626 53 9 0 chr6 85855363 85857111 -103422443 - L1PA5 LINE L1 0 6154 4398 6334 39 18 0 chr6 85857111 85857880 -103421674 + L1P LINE L1 3534 4316 -1830 287 291 113 12 chr6 85858440 85858760 -103420794 - L1MC/D LINE L1 -1686 4460 4109 440 270 75 52 chr6 85858795 85859118 -103420436 - MLT1J LTR MaLR -24 487 102 313 265 147 28 chr6 85859192 85859403 -103420151 - L1MC/D LINE L1 -2061 4085 3850 22 0 0 0 chr6 85859494 85859516 -103420038 + AT_rich Low_complexity Low_complexity 1 22 0 3490 50 0 0 chr6 85859799 85860236 -103419318 - L1PA4 LINE L1 0 6155 5719 18094 47 5 1 chr6 85860236 85862520 -103417034 - L1PA4 LINE L1 -877 5269 2977 2034 132 0 0 chr6 85862581 85862861 -103416693 + AluSg SINE Alu 1 301 0 190 0 0 0 chr6 85862861 85862882 -103416672 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 288 0 0 0 chr6 85862914 85862946 -103416608 + (CA)n Simple_repeat Simple_repeat 2 33 0 5061 152 23 8 chr6 85863024 85863902 -103415652 + L1PB3 LINE L1 5261 6151 -3 370 209 30 82 chr6 85865198 85865332 -103414222 + MIR SINE MIR 136 262 0 28 0 0 0 chr6 85865332 85865360 -103414194 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr6 85865655 85865691 -103413863 + AT_rich Low_complexity Low_complexity 1 36 0 243 324 19 9 chr6 85866463 85866571 -103412983 - MIR SINE MIR -82 126 18 24 53 0 0 chr6 85867174 85867212 -103412342 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr6 85868179 85868205 -103411349 + AT_rich Low_complexity Low_complexity 1 26 0 1299 146 198 58 chr6 85868394 85868723 -103410831 - THE1C LTR MaLR 0 375 1 443 232 161 0 chr6 85869039 85869190 -103410364 - FLAM_A SINE Alu 0 169 1 205 390 8 8 chr6 85869832 85869955 -103409599 - L2 LINE L2 -475 2839 2717 21 0 0 0 chr6 85871069 85871090 -103408464 + AT_rich Low_complexity Low_complexity 1 21 0 1723 209 90 59 chr6 85871141 85871629 -103407925 + MLT1D LTR MaLR 3 505 0 2505 230 48 85 chr6 85871629 85872537 -103407017 + MLT1D-int LTR MaLR 1 875 -496 208 283 0 0 chr6 85872606 85872652 -103406902 + polypurine Low_complexity Low_complexity 3 48 0 575 150 24 30 chr6 85872652 85872819 -103406735 + GA-rich Low_complexity Low_complexity 2 167 0 4967 29 0 2 chr6 85872819 85873403 -103406151 + L1PA3 LINE L1 5570 6152 -3 1212 227 11 122 chr6 85873460 85873927 -103405627 + MLT1D-int LTR MaLR 957 1371 0 504 299 147 43 chr6 85874313 85874681 -103404873 + LTR33 LTR ERVL 102 507 -14 210 24 95 0 chr6 85875654 85875696 -103403858 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 9857 31 3 0 chr6 85875696 85877645 -103401909 - L1PA3 LINE L1 -10 6145 4193 22 56 0 0 chr6 85877811 85877847 -103401707 + AT_rich Low_complexity Low_complexity 1 36 0 2857 164 21 2 chr6 85878531 85879060 -103400494 + L1PB4 LINE L1 5615 6153 -3 488 286 73 0 chr6 85879115 85879293 -103400261 - MIR SINE MIR -21 241 51 201 222 139 69 chr6 85879292 85879364 -103400190 + MIR SINE MIR 165 241 -21 * 31 26 0 0 chr6 85880264 85880302 -103399252 + AT_rich Low_complexity Low_complexity 1 38 0 940 206 0 0 chr6 85880308 85880463 -103399091 - AluJb SINE Alu -26 286 132 6145 105 18 0 chr6 85880664 85882122 -103397432 + L1PA11 LINE L1 4709 6174 0 25 51 0 0 chr6 85882162 85882201 -103397353 + AT_rich Low_complexity Low_complexity 1 39 0 622 216 124 60 chr6 85882647 85882865 -103396689 - MIR SINE MIR -13 249 18 719 268 50 6 chr6 85883235 85883414 -103396140 - MER5A DNA MER1_type -1 188 2 40358 56 23 3 chr6 85883586 85889624 -103389930 + L1PA4 LINE L1 1 6155 0 2892 160 157 152 chr6 85890371 85890903 -103388651 - L1MC2 LINE L1 -22 7741 7213 278 325 0 16 chr6 85890903 85891029 -103388525 - MLT1F1 LTR MaLR -420 147 24 2892 160 157 152 chr6 85891029 85891534 -103388020 - L1MC2 LINE L1 -550 7213 6137 32 26 0 0 chr6 85891558 85891597 -103387957 + AT_rich Low_complexity Low_complexity 1 39 0 1578 198 81 3 chr6 85892042 85892400 -103387154 - MLT1B LTR MaLR -4 386 1 6585 141 61 1 chr6 85892705 85893865 -103385689 - Tigger3b DNA MER2_type 0 1231 2 1354 182 96 25 chr6 85895121 85895445 -103384109 + MLT1D LTR MaLR 159 505 0 2480 67 0 6 chr6 85896529 85896841 -103382713 - AluY SINE Alu -1 310 1 5070 20 8 2 chr6 85896864 85897462 -103382092 - L1PA3 LINE L1 0 6155 5554 2936 22 0 0 chr6 85897462 85897982 -103381572 + L1PA3 LINE L1 5045 5564 -591 362 345 15 60 chr6 85898281 85898411 -103381143 - MIR3 SINE MIR -2 206 87 2283 217 36 48 chr6 85898411 85899001 -103380553 - MER119 DNA MER1_type 0 583 1 362 345 15 60 chr6 85899001 85899070 -103380484 - MIR3 SINE MIR -121 87 16 504 331 66 0 chr6 85899293 85899474 -103380080 + MIR SINE MIR 3 195 -67 207 333 24 0 chr6 85900877 85900961 -103378593 + MER5B DNA MER1_type 87 172 -6 242 330 33 33 chr6 85901980 85902071 -103377483 + MIR3 SINE MIR 65 155 -53 263 310 84 21 chr6 85902078 85902220 -103377334 - MER5A DNA MER1_type -2 187 37 847 220 23 6 chr6 85902224 85902236 -103377318 + MER5A DNA MER1_type 13 23 -166 1551 167 50 36 chr6 85902236 85902596 -103376958 + MLT1A1 LTR MaLR 1 365 0 847 220 23 6 chr6 85902596 85902756 -103376798 + MER5A DNA MER1_type 23 188 -1 2160 63 40 27 chr6 85902895 85903195 -103376359 - AluY SINE Alu -7 304 1 23 68 0 0 chr6 85904462 85904506 -103375048 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr6 85905822 85905854 -103373700 + AT_rich Low_complexity Low_complexity 1 32 0 3492 214 35 63 chr6 85908618 85909685 -103369869 - L1MC3 LINE L1 -8 7777 6741 2591 102 13 11 chr6 85909803 85910176 -103369378 + Tigger4(Zombi) DNA MER2_type 2164 2537 -194 21 0 0 0 chr6 85910296 85910317 -103369237 + AT_rich Low_complexity Low_complexity 1 21 0 267 292 0 0 chr6 85910341 85910408 -103369146 + MIR SINE MIR 55 121 -87 264 345 112 0 chr6 85911915 85912147 -103367407 + L2 LINE L2 2355 2612 -702 331 286 11 11 chr6 85912152 85912243 -103367311 + MIR SINE MIR 15 105 -157 1885 194 14 16 chr6 85912249 85912297 -103367257 + MLT1A1 LTR MaLR 1 48 -317 2981 127 65 70 chr6 85912297 85912644 -103366910 - MER4B LTR ERV1 0 610 265 2184 92 0 4 chr6 85912644 85912926 -103366628 + AluSg SINE Alu 1 281 -29 208 0 0 0 chr6 85912926 85912949 -103366605 + (TAAA)n Simple_repeat Simple_repeat 2 164 0 2981 127 65 70 chr6 85912949 85913213 -103366341 - MER4B LTR ERV1 -345 265 1 1885 194 14 16 chr6 85913213 85913530 -103366024 + MLT1A1 LTR MaLR 48 365 0 380 266 101 22 chr6 85913531 85913670 -103365884 + MIR SINE MIR 108 257 -5 217 324 68 57 chr6 85913754 85913930 -103365624 + L2 LINE L2 2685 2862 -452 309 184 29 87 chr6 85913968 85914071 -103365483 - MLT1I LTR MaLR -35 374 278 402 205 157 42 chr6 85917089 85917255 -103362299 - MER53 DNA DNA -3 186 2 41434 58 3 7 chr6 85918746 85924922 -103354632 + L1PA5 LINE L1 2 6154 0 807 147 0 0 chr6 85924949 85925085 -103354469 + AluSg/x SINE Alu 175 310 0 180 0 0 0 chr6 85925237 85925257 -103354297 + (CATGT)n Simple_repeat Simple_repeat 4 23 0 191 88 29 0 chr6 85925647 85925681 -103353873 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 244 360 0 9 chr6 85925691 85925805 -103353749 + GA-rich Low_complexity Low_complexity 1 113 0 23 33 0 0 chr6 85926241 85926271 -103353283 + AT_rich Low_complexity Low_complexity 1 30 0 3178 34 0 3 chr6 85926968 85927356 -103352198 + L1PA4 LINE L1 5767 6153 -2 478 307 54 82 chr6 85927406 85927774 -103351780 + MLT1I LTR MaLR 38 395 -14 21 0 0 0 chr6 85928381 85928402 -103351152 + AT_rich Low_complexity Low_complexity 1 21 0 12973 190 34 31 chr6 85928933 85929487 -103350067 + L1MA4A LINE L1 1848 2399 -3904 1638 189 3 10 chr6 85929487 85929800 -103349754 + AluJb SINE Alu 1 311 -1 12973 190 34 31 chr6 85929800 85930711 -103348843 + L1MA4A LINE L1 2399 3305 -2998 2068 137 0 13 chr6 85930711 85931025 -103348529 + AluSq SINE Alu 3 312 -1 12973 190 34 31 chr6 85931025 85932199 -103347355 + L1MA4A LINE L1 3305 4473 -1830 660 67 0 0 chr6 85932199 85932289 -103347265 + (TA)n Simple_repeat Simple_repeat 2 91 0 12973 190 34 31 chr6 85932289 85934170 -103345384 + L1MA4A LINE L1 4473 6303 0 544 331 0 7 chr6 85934276 85934434 -103345120 + MIR SINE MIR 8 164 -44 2086 107 6 35 chr6 85935357 85935675 -103343879 + AluSc SINE Alu 1 309 0 2212 120 0 0 chr6 85936690 85936991 -103342563 - AluSx SINE Alu -11 301 1 237 244 0 47 chr6 85937061 85937147 -103342407 + A-rich Low_complexity Low_complexity 4 85 0 5153 153 30 22 chr6 85937425 85938512 -103341042 - L1PA16 LINE L1 0 6166 5080 457 171 0 0 chr6 85938517 85938593 -103340961 + AluJ/FLAM SINE Alu 12 87 -225 2770 13 0 0 chr6 85939351 85939661 -103339893 + AluYb8 SINE Alu 1 310 -8 498 195 34 0 chr6 85940799 85940917 -103338637 + L1MA8 LINE L1 6170 6291 0 404 302 60 40 chr6 85941650 85941902 -103337652 - MIR SINE MIR -2 260 4 212 198 220 0 chr6 85942066 85942157 -103337397 - MIR SINE MIR 0 262 152 4743 116 23 35 chr6 85945007 85945700 -103333854 + L1PA16 LINE L1 5352 6035 -131 2002 143 39 39 chr6 85945700 85946064 -103333490 - THE1B LTR MaLR 0 364 1 4743 116 23 35 chr6 85946064 85946186 -103333368 + L1PA16 LINE L1 6035 6157 -9 22 35 0 0 chr6 85946231 85946260 -103333294 + AT_rich Low_complexity Low_complexity 1 29 0 1050 254 73 27 chr6 85946743 85947073 -103332481 + L1MC4a LINE L1 6442 6786 -1022 23 0 0 0 chr6 85948305 85948328 -103331226 + AT_rich Low_complexity Low_complexity 1 23 0 390 343 84 0 chr6 85948921 85949087 -103330467 - MIR SINE MIR -27 235 56 30 45 0 0 chr6 85949517 85949561 -103329993 + AT_rich Low_complexity Low_complexity 1 44 0 25 65 0 0 chr6 85950054 85950100 -103329454 + AT_rich Low_complexity Low_complexity 1 46 0 23 101 0 0 chr6 85950700 85950779 -103328775 + AT_rich Low_complexity Low_complexity 1 79 0 22 0 0 0 chr6 85950906 85950928 -103328626 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr6 85951588 85951633 -103327921 + AT_rich Low_complexity Low_complexity 1 45 0 8648 52 4 0 chr6 85951768 85952835 -103326719 + MER11C LTR ERVK 1 1071 0 238 308 159 9 chr6 85953298 85953405 -103326149 + L2 LINE L2 2681 2803 -511 199 347 27 27 chr6 85953665 85953740 -103325814 + L2 LINE L2 3141 3215 -57 1084 151 78 18 chr6 85953742 85953960 -103325594 + MLT1B LTR MaLR 3 233 -157 828 181 0 0 chr6 85954426 85954564 -103324990 + MLT1B LTR MaLR 253 390 0 340 309 73 30 chr6 85954629 85954794 -103324760 + MIR SINE MIR 47 218 -44 276 268 0 0 chr6 85956177 85956248 -103323306 + LTR16C LTR ERVL 352 422 -69 4835 110 10 6 chr6 85958019 85958736 -103320818 - L1PA10 LINE L1 0 6168 5449 6946 138 16 13 chr6 85958736 85959914 -103319640 + L1P LINE L1 3568 4749 -1397 2183 162 93 33 chr6 85960190 85960297 -103319257 - L1MA9 LINE L1 -10 7004 6905 5121 127 58 8 chr6 85960297 85961155 -103318399 - MER4D LTR ERV1 -2 901 1 2183 162 93 33 chr6 85961155 85961529 -103318025 - L1MA9 LINE L1 -109 6905 6494 315 0 0 0 chr6 85961558 85961593 -103317961 + (CA)n Simple_repeat Simple_repeat 2 36 0 732 206 0 0 chr6 85961600 85961746 -103317808 + L1M3 LINE L1 5625 5770 -564 200 108 0 27 chr6 85961763 85961800 -103317754 + (CATATA)n Simple_repeat Simple_repeat 3 38 0 259 209 11 66 chr6 85961807 85961898 -103317656 - L1MC4 LINE L1 -1344 6698 6613 308 202 8 25 chr6 85961922 85962041 -103317513 + (TA)n Simple_repeat Simple_repeat 2 118 0 2505 203 51 10 chr6 85962042 85963057 -103316497 - L1MA9 LINE L1 -519 6495 5449 3161 40 0 0 chr6 85963061 85963440 -103316114 - L1PA4 LINE L1 -3 6152 5774 2746 28 0 3 chr6 85963438 85963761 -103315793 + L1PA4 LINE L1 5474 5795 -360 * 7627 229 51 24 chr6 85963760 85966079 -103313475 - L1MA9 LINE L1 -1387 5461 3079 422 217 0 0 chr6 85966066 85966158 -103313396 - L1MA9 LINE L1 -4381 2468 2377 * 525 263 35 12 chr6 85966158 85966329 -103313225 - L2 LINE L2 -1211 2103 1929 244 187 13 93 chr6 85966830 85966905 -103312649 - L2 LINE L2 -6 3307 3239 340 309 7 50 chr6 85967002 85967141 -103312413 - MIR SINE MIR -82 180 48 288 322 163 51 chr6 85967269 85967698 -103311856 + L3 LINE CR1 444 920 -657 1175 203 96 7 chr6 85967744 85968035 -103311519 + L1ME2 LINE L1 5405 5721 -443 726 231 57 53 chr6 85968057 85968321 -103311233 + L1ME2 LINE L1 5899 6163 -1 194 345 69 0 chr6 85968367 85968454 -103311100 + L3 LINE CR1 1329 1421 -156 1799 119 36 0 chr6 85968481 85968732 -103310822 + AluSq SINE Alu 1 260 -53 271 344 11 0 chr6 85969080 85969170 -103310384 + MER117 DNA MER1_type 103 193 -4 8321 164 8 30 chr6 85969455 85971233 -103308321 + L1MA2 LINE L1 3734 5488 -743 960 163 7 0 chr6 85971233 85971386 -103308168 + AluJb SINE Alu 136 289 -23 4842 138 18 10 chr6 85971387 85972208 -103307346 + L1MA2 LINE L1 5477 6304 0 192 321 28 83 chr6 85973305 85973414 -103306140 + L2 LINE L2 3136 3238 -34 465 66 0 0 chr6 85975464 85975525 -103304029 + (TA)n Simple_repeat Simple_repeat 2 62 0 258 32 0 0 chr6 85975524 85975555 -103303999 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 444 194 101 11 chr6 85975585 85975767 -103303787 + MLT1E3 LTR MaLR 53 235 -391 1202 218 18 14 chr6 85975769 85976044 -103303510 + MLT1E3 LTR MaLR 349 624 0 1725 179 7 16 chr6 85976044 85976352 -103303202 + AluJb SINE Alu 1 305 -7 6601 67 10 11 chr6 85976501 85977766 -103301788 + L1PA8A LINE L1 4841 6101 -30 35 78 0 0 chr6 85977809 85977886 -103301668 + AT_rich Low_complexity Low_complexity 1 77 0 211 189 0 0 chr6 85980580 85980617 -103298937 + MIR SINE MIR 186 222 -40 22 0 0 0 chr6 85980627 85980649 -103298905 + AT_rich Low_complexity Low_complexity 1 22 0 2221 116 0 0 chr6 85980717 85981009 -103298545 + AluSx SINE Alu 3 294 -18 2272 110 0 0 chr6 85981191 85981499 -103298055 + AluSg SINE Alu 1 308 -2 2183 204 97 15 chr6 85983297 85983821 -103295733 + MLT1F1 LTR MaLR 1 567 0 22 35 0 0 chr6 85983827 85983856 -103295698 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 85986358 85986381 -103293173 + AT_rich Low_complexity Low_complexity 1 23 0 209 267 93 12 chr6 85986637 85986723 -103292831 - MIR3 SINE MIR -3 205 113 313 299 68 64 chr6 85986806 85987070 -103292484 - L1M4 LINE L1 -1652 4494 4230 243 0 0 0 chr6 85987076 85987103 -103292451 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1238 136 0 11 chr6 85987105 85987289 -103292265 - MSTC LTR MaLR -80 348 167 239 239 60 0 chr6 85987328 85987395 -103292159 - L1M4 LINE L1 -2000 4146 4076 250 190 52 0 chr6 85987681 85987739 -103291815 + MSTC LTR MaLR 1 61 -367 * 1630 176 4 0 chr6 85987724 85987985 -103291569 + MSTC LTR MaLR 167 428 0 3435 257 53 44 chr6 85987989 85989066 -103290488 + MSTC-int LTR MaLR 4 1090 -645 241 152 43 0 chr6 85989109 85989155 -103290399 + MSTC LTR MaLR 1 48 -380 * 1396 178 4 9 chr6 85989152 85989377 -103290177 + MSTC LTR MaLR 167 390 -38 1675 172 195 21 chr6 85989590 85990020 -103289534 + MLT1D LTR MaLR 1 505 0 330 335 129 44 chr6 85990859 85991354 -103288200 - L2 LINE L2 -448 2866 2330 1569 182 17 20 chr6 85991652 85991954 -103287600 + AluJb SINE Alu 1 301 -11 31 0 0 0 chr6 85992356 85992387 -103287167 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 85992656 85992677 -103286877 + AT_rich Low_complexity Low_complexity 1 21 0 1302 259 47 45 chr6 85992922 85993347 -103286207 - MLT1G1 LTR MaLR -169 426 1 23 0 0 0 chr6 85993958 85993981 -103285573 + AT_rich Low_complexity Low_complexity 1 23 0 916 237 6 0 chr6 85996062 85996239 -103283315 - MER45A DNA AcHobo 0 178 1 25 0 0 0 chr6 85996333 85996358 -103283196 + AT_rich Low_complexity Low_complexity 1 25 0 537 311 109 0 chr6 85997922 85998105 -103281449 - L3 LINE CR1 -857 720 518 216 357 0 24 chr6 85999297 85999381 -103280173 - MIR3 SINE MIR -124 84 3 187 298 0 0 chr6 85999576 85999623 -103279931 - L2 LINE L2 -16 3256 3210 1945 49 0 0 chr6 86000112 86000421 -103279133 - L1PA5 LINE L1 -700 5454 5146 * 5796 33 0 0 chr6 86000419 86001124 -103278430 + L1PA5 LINE L1 5457 6161 0 22 0 0 0 chr6 86002087 86002109 -103277445 + AT_rich Low_complexity Low_complexity 1 22 0 391 253 162 22 chr6 86003145 86003447 -103276107 - MER113 DNA MER1_type? -1 520 138 373 256 65 30 chr6 86004045 86004213 -103275341 + MER104 DNA MER2_type 4 177 -3 203 359 94 9 chr6 86004500 86004606 -103274948 - MIR3 SINE MIR -48 160 46 1023 225 47 17 chr6 86004631 86004867 -103274687 - MLT1F1 LTR MaLR -5 562 320 258 259 111 9 chr6 86005060 86005168 -103274386 + L1ME4a LINE L1 5979 6097 -24 28 0 0 0 chr6 86006465 86006493 -103273061 + AT_rich Low_complexity Low_complexity 1 28 0 10126 55 5 79 chr6 86006671 86008146 -103271408 + SVA Other Other 13 1378 -8 234 156 0 0 chr6 86008184 86008229 -103271325 + A-rich Low_complexity Low_complexity 1 45 0 29 47 0 0 chr6 86008633 86008676 -103270878 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr6 86008960 86008984 -103270570 + AT_rich Low_complexity Low_complexity 1 24 0 1395 220 30 10 chr6 86009013 86009335 -103270219 + MER31A LTR ERV1 1 327 -139 1764 23 0 0 chr6 86009335 86009553 -103270001 - L1P LINE L1 -785 5361 5144 2634 23 0 3 chr6 86009553 86009885 -103269669 + L1PA3 LINE L1 5840 6175 0 542 225 56 11 chr6 86009896 86010046 -103269508 + MER31B LTR ERV1 307 543 0 2479 84 0 0 chr6 86011229 86011540 -103268014 - AluY SINE Alu 0 311 1 195 406 40 10 chr6 86012461 86012562 -103266992 + L2 LINE L2 3136 3239 -33 23 54 0 0 chr6 86012575 86012612 -103266942 + AT_rich Low_complexity Low_complexity 1 37 0 267 309 87 34 chr6 86013060 86013209 -103266345 - MIR SINE MIR -70 192 36 297 327 19 10 chr6 86014347 86014451 -103265103 - MIR3 SINE MIR -6 202 98 311 190 95 43 chr6 86014457 86014573 -103264981 - HsTC2 DNA Tc2 -3 1895 1774 11575 34 0 0 chr6 86014640 86016035 -103263519 - L1PA3 LINE L1 -1310 4836 3442 7446 30 9 0 chr6 86016035 86017352 -103262202 + L1PA3 LINE L1 4829 6153 -2 340 238 40 0 chr6 86017352 86017453 -103262101 + L1MC5 LINE L1 7488 7592 -369 2111 192 21 3 chr6 86017467 86018004 -103261550 + L1P4 LINE L1 4895 5442 -723 * 19941 172 25 6 chr6 86018000 86025564 -103253990 + L1MA1 LINE L1 13 7721 0 3905 211 18 5 chr6 86025563 86026420 -103253134 + L1MA8 LINE L1 3275 4142 -2004 * 431 233 54 50 chr6 86026425 86026794 -103252760 - L1MCc LINE L1 -4944 1479 1291 4270 171 13 6 chr6 86026843 86027628 -103251926 + L1MA8 LINE L1 5482 6271 -20 188 200 18 0 chr6 86028080 86028135 -103251419 + (TA)n Simple_repeat Simple_repeat 2 57 0 1941 145 3 10 chr6 86029988 86030298 -103249256 + AluSx SINE Alu 1 308 -4 244 143 0 24 chr6 86030300 86030342 -103249212 + (GGAGA)n Simple_repeat Simple_repeat 2 42 0 782 139 20 25 chr6 86030342 86030704 -103248850 + GA-rich Low_complexity Low_complexity 1 359 0 645 265 59 25 chr6 86031465 86031669 -103247885 + LTR67 LTR ERVL 341 551 -6 560 199 16 179 chr6 86031864 86032115 -103247439 - MER63A DNA MER1_type 0 210 1 183 42 0 0 chr6 86032182 86032206 -103247348 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 276 367 173 0 chr6 86032296 86032446 -103247108 + MER5A DNA MER1_type 11 186 -3 229 319 0 60 chr6 86032905 86033021 -103246533 - MER117 DNA MER1_type -30 167 59 23 0 0 0 chr6 86033330 86033353 -103246201 + AT_rich Low_complexity Low_complexity 1 23 0 467 210 77 47 chr6 86033536 86033714 -103245840 + L1MD1 LINE L1 1472 1748 -4896 472 138 11 11 chr6 86033719 86033813 -103245741 + A-rich Low_complexity Low_complexity 2 95 0 8576 37 1 1 chr6 86033814 86034886 -103244668 - L1P LINE L1 -2449 3697 2626 216 0 0 0 chr6 86034887 86034911 -103244643 + (GAAAA)n Simple_repeat Simple_repeat 1 24 0 1718 181 7 3 chr6 86034914 86035223 -103244331 + AluSx SINE Alu 1 310 -2 6113 232 83 29 chr6 86035226 86035341 -103244213 + L1MD1 LINE L1 1775 1882 -4762 2175 90 0 21 chr6 86035341 86035658 -103243896 + AluY SINE Alu 1 311 0 6113 232 83 29 chr6 86035658 86039244 -103240310 + L1MD1 LINE L1 1882 5778 -866 555 172 0 0 chr6 86039249 86039342 -103240212 + L1PA6 LINE L1 2 94 -6367 33988 87 11 8 chr6 86039368 86045033 -103234521 + L1PA6 LINE L1 786 6466 -3 4401 191 53 4 chr6 86045034 86045957 -103233597 + L1MD1 LINE L1 5773 6740 0 1983 112 7 46 chr6 86045987 86046291 -103233263 + AluSx SINE Alu 1 292 -20 964 259 33 19 chr6 86046296 86046659 -103232895 + L1ME1 LINE L1 3348 3715 -2431 852 108 0 8 chr6 86046759 86046879 -103232675 - AluSq SINE Alu -117 196 78 1309 231 174 31 chr6 86046879 86047482 -103232072 + L1ME1 LINE L1 3726 4414 -1732 2832 250 70 6 chr6 86047489 86048436 -103231118 + L1ME1 LINE L1 5148 6158 -8 1513 198 6 45 chr6 86049730 86050043 -103229511 + AluJo SINE Alu 3 303 -9 231 353 73 7 chr6 86050436 86050572 -103228982 + L2 LINE L2 3169 3313 0 276 100 0 0 chr6 86050572 86050612 -103228942 + (TC)n Simple_repeat Simple_repeat 2 41 0 288 0 0 0 chr6 86050612 86050644 -103228910 + (CA)n Simple_repeat Simple_repeat 1 32 0 495 261 58 96 chr6 86050939 86051230 -103228324 + MLT1J1 LTR MaLR 106 385 -61 453 364 58 46 chr6 86051323 86051650 -103227904 - L2 LINE L2 -2 3270 2940 4638 11 0 2 chr6 86051910 86052442 -103227112 - L1PA2 LINE L1 -2 6153 5623 5699 20 0 0 chr6 86052442 86053353 -103226201 + L1PA2 LINE L1 4713 5623 -532 6231 280 48 40 chr6 86054245 86056270 -103223284 + L1MA5 LINE L1 2 1645 -5087 207 0 0 0 chr6 86056270 86056293 -103223261 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6231 280 48 40 chr6 86056293 86057437 -103222117 + L1MA5 LINE L1 1645 2779 -3953 1857 170 0 7 chr6 86057438 86057744 -103221810 + AluJo SINE Alu 1 304 -8 406 95 95 0 chr6 86057744 86057892 -103221662 + (TA)n Simple_repeat Simple_repeat 1 162 0 356 261 0 11 chr6 86057897 86057985 -103221569 + (TATATG)n Simple_repeat Simple_repeat 6 92 0 14051 168 51 19 chr6 86057985 86059324 -103220230 + L1MA5 LINE L1 2767 4061 -2825 2366 61 0 7 chr6 86059324 86059620 -103219934 + AluY SINE Alu 1 294 -17 14051 168 51 19 chr6 86059620 86062076 -103217478 + L1MA5 LINE L1 4061 6687 -199 564 181 39 16 chr6 86062096 86062219 -103217335 + L1MA5 LINE L1 6752 6881 -5 28 0 0 0 chr6 86062409 86062437 -103217117 + AT_rich Low_complexity Low_complexity 1 28 0 740 250 64 6 chr6 86063955 86064127 -103215427 + MER5A DNA MER1_type 2 183 -6 376 318 74 15 chr6 86064568 86064777 -103214777 - MIR SINE MIR -34 228 13 184 269 58 0 chr6 86064784 86064836 -103214718 - L2 LINE L2 -1036 2278 2224 1413 162 17 0 chr6 86064852 86065087 -103214467 - Tigger3(Golem) DNA MER2_type 0 3038 2800 673 228 7 54 chr6 86065093 86065242 -103214312 - Tigger3(Golem) DNA MER2_type -2887 142 1 467 295 18 0 chr6 86065339 86065451 -103214103 + MER81 DNA DNA 1 114 0 41 0 0 0 chr6 86066591 86066632 -103212922 + AT_rich Low_complexity Low_complexity 1 41 0 6431 254 50 10 chr6 86066639 86068223 -103211331 + L1PA12 LINE L1 10 1656 -5925 12871 226 48 24 chr6 86068276 86071779 -103207775 + L1PA12 LINE L1 2461 6045 -1539 306 233 0 14 chr6 86071886 86071959 -103207595 - AluS SINE Alu -229 72 1 17972 50 5 2 chr6 86072019 86074307 -103205247 + L1PA4 LINE L1 2977 5272 -874 3490 50 0 0 chr6 86074307 86074741 -103204813 + L1PA4 LINE L1 5719 6155 0 22 0 0 0 chr6 86075024 86075046 -103204508 + AT_rich Low_complexity Low_complexity 1 22 0 313 265 147 28 chr6 86075137 86075348 -103204206 + L1M4 LINE L1 3850 4085 -2061 440 270 75 52 chr6 86075422 86075745 -103203809 + MLT1J LTR MaLR 102 487 -24 287 291 113 12 chr6 86075780 86076100 -103203454 + L1M4 LINE L1 4109 4460 -1686 6313 40 18 0 chr6 86076660 86077429 -103202125 - L1P LINE L1 -1830 4316 3534 7657 55 7 0 chr6 86077429 86079184 -103200370 + L1PA5 LINE L1 4398 6161 0 22 0 0 0 chr6 86080147 86080169 -103199385 + AT_rich Low_complexity Low_complexity 1 22 0 391 253 162 22 chr6 86081205 86081507 -103198047 - MER113 DNA MER1_type? -1 520 138 373 256 65 30 chr6 86082105 86082273 -103197281 + MER104 DNA MER2_type 4 177 -3 203 359 94 9 chr6 86082560 86082666 -103196888 - MIR3 SINE MIR -48 160 46 1023 225 47 17 chr6 86082691 86082927 -103196627 - MLT1F1 LTR MaLR -5 562 320 258 259 111 9 chr6 86083120 86083228 -103196326 + L1ME4a LINE L1 5979 6097 -24 28 0 0 0 chr6 86084523 86084551 -103195003 + AT_rich Low_complexity Low_complexity 1 28 0 5539 105 27 17 chr6 86084729 86085570 -103193984 + SVA Other Other 19 868 -518 740 250 64 6 chr6 86085779 86085951 -103193603 - MER5A DNA MER1_type -6 183 2 28 0 0 0 chr6 86087468 86087496 -103192058 + AT_rich Low_complexity Low_complexity 1 28 0 13168 148 17 20 chr6 86087817 86090117 -103189437 - L1P LINE L1 -3843 2303 11 1346 227 100 7 chr6 86090129 86090570 -103188984 - L1M4 LINE L1 -866 5280 4799 195 245 0 0 chr6 86091122 86091175 -103188379 + MIR SINE MIR 90 142 -120 304 228 18 70 chr6 86091590 86091704 -103187850 + LTR33A LTR ERVL 416 523 0 6047 159 57 17 chr6 86092231 86093997 -103185557 - L1MA5A LINE L1 -21 6276 4401 195 42 0 0 chr6 86093997 86094021 -103185533 + (TG)n Simple_repeat Simple_repeat 1 24 0 6047 159 57 17 chr6 86094021 86094448 -103185106 - L1MA5A LINE L1 -1896 4401 3993 1351 190 56 0 chr6 86094439 86094776 -103184778 - L1MA5A LINE L1 -2994 3152 2797 * 267 312 16 22 chr6 86095680 86095786 -103183768 + GA-rich Low_complexity Low_complexity 3 182 0 201 219 31 0 chr6 86097194 86097258 -103182296 + (TA)n Simple_repeat Simple_repeat 1 66 0 1979 129 10 13 chr6 86098012 86098314 -103181240 + AluSx SINE Alu 1 301 -11 539 324 60 23 chr6 86098495 86098794 -103180760 - MLT1I LTR MaLR -23 386 77 776 247 45 21 chr6 86098799 86099327 -103180227 - L1ME LINE L1 -704 5458 4810 1680 118 15 8 chr6 86099453 86099715 -103179839 - L1PB1 LINE L1 -10 6141 5878 441 0 0 0 chr6 86099715 86099764 -103179790 + (TA)n Simple_repeat Simple_repeat 2 50 0 474 87 0 0 chr6 86099766 86099835 -103179719 - L1PA2 LINE L1 -13 6142 6074 1619 128 27 6 chr6 86100615 86100954 -103178600 + L1PA13 LINE L1 5110 5452 -722 222 37 0 0 chr6 86101982 86102009 -103177545 + (ATG)n Simple_repeat Simple_repeat 2 28 0 952 190 6 0 chr6 86105766 86105945 -103173609 + MER2 DNA MER2_type 43 222 -123 3131 154 8 0 chr6 86106128 86106653 -103172901 + L1PA13 LINE L1 5635 6163 0 2454 90 0 3 chr6 86106969 86107281 -103172273 + AluSp SINE Alu 1 311 -2 220 230 162 40 chr6 86107975 86108049 -103171505 - L2 LINE L2 0 3272 3190 24 67 0 0 chr6 86108432 86108477 -103171077 + AT_rich Low_complexity Low_complexity 1 45 0 226 121 0 0 chr6 86109033 86109066 -103170488 - MLT1L LTR MaLR -389 226 194 240 333 0 21 chr6 86109250 86109346 -103170208 - MER117 DNA MER1_type -45 152 59 22 0 0 0 chr6 86109655 86109677 -103169877 + AT_rich Low_complexity Low_complexity 1 22 0 472 212 77 47 chr6 86109861 86110039 -103169515 + L1M4 LINE L1 1472 1748 -4896 517 131 10 10 chr6 86110044 86110143 -103169411 + A-rich Low_complexity Low_complexity 2 100 0 8888 63 1 2 chr6 86110144 86111326 -103168228 - L1P LINE L1 -2449 3697 2517 276 328 90 23 chr6 86111534 86111790 -103167764 - L2 LINE L2 -1490 1824 1552 239 286 112 0 chr6 86112464 86112562 -103166992 + LTR67 LTR ERVL 99 207 -350 318 296 108 11 chr6 86112741 86112917 -103166637 + LTR67 LTR ERVL 365 557 0 368 236 57 38 chr6 86112923 86113029 -103166525 + MER58 DNA MER1_type 1 108 -107 547 165 73 0 chr6 86113037 86113146 -103166408 + MER53 DNA DNA 6 122 -67 381 176 15 0 chr6 86113182 86113250 -103166304 + MER58 DNA MER1_type 2338 2406 -14 1198 296 41 50 chr6 86113871 86114453 -103165101 + L2 LINE L2 1939 2515 -799 14396 124 39 12 chr6 86114553 86116917 -103162637 - Tigger1 DNA MER2_type 0 2418 2 292 258 32 43 chr6 86116967 86117060 -103162494 + L2 LINE L2 3222 3313 0 21 36 0 0 chr6 86117251 86117279 -103162275 + AT_rich Low_complexity Low_complexity 1 28 0 2561 56 3 0 chr6 86118000 86118306 -103161248 + AluSp SINE Alu 1 307 -6 3709 182 44 9 chr6 86118569 86120038 -103159516 - L1PB4 LINE L1 -179 5977 4461 261 83 0 0 chr6 86120069 86120105 -103159449 + (TG)n Simple_repeat Simple_repeat 1 36 0 1539 203 160 21 chr6 86120150 86120682 -103158872 - L1ME LINE L1 -2896 3184 2579 2043 268 57 59 chr6 86120712 86122382 -103157172 - L1ME LINE L1 -4539 1722 6 7849 15 0 0 chr6 86122762 86123887 -103155667 + L1HS LINE L1 5027 6151 -4 207 69 0 0 chr6 86123889 86123918 -103155636 + (TAA)n Simple_repeat Simple_repeat 2 30 0 28 48 0 0 chr6 86124997 86125039 -103154515 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr6 86125326 86125350 -103154204 + AT_rich Low_complexity Low_complexity 1 24 0 1359 222 30 10 chr6 86125379 86125701 -103153853 + MER31A LTR ERV1 1 327 -139 1677 28 5 5 chr6 86125701 86125919 -103153635 - L1P LINE L1 -785 5361 5144 * 2658 22 0 3 chr6 86125914 86126228 -103153326 + L1HS LINE L1 5840 6152 -3 431 275 54 49 chr6 86126936 86127361 -103152193 + L1MC4 LINE L1 6717 7133 -828 236 324 129 30 chr6 86127407 86127873 -103151681 + L1MC4 LINE L1 7206 7717 -325 267 222 63 40 chr6 86128001 86128127 -103151427 + L1ME4a LINE L1 5990 6118 -3 2174 198 87 17 chr6 86128379 86128860 -103150694 - MLT2B2 LTR ERVL 0 515 1 1803 117 0 4 chr6 86129111 86129368 -103150186 - AluY SINE Alu -55 256 1 182 459 30 8 chr6 86130257 86130390 -103149164 + L2 LINE L2 3104 3239 -33 23 54 0 0 chr6 86130403 86130440 -103149114 + AT_rich Low_complexity Low_complexity 1 37 0 267 309 87 34 chr6 86130888 86131037 -103148517 - MIR SINE MIR -70 192 36 270 350 19 0 chr6 86132176 86132279 -103147275 - MIR3 SINE MIR -6 202 98 300 190 95 43 chr6 86132285 86132401 -103147153 - HsTC2 DNA Tc2 -3 1895 1774 12927 63 15 2 chr6 86132468 86134177 -103145377 - L1P LINE L1 -1310 4836 3107 533 274 23 29 chr6 86135087 86135262 -103144292 + MIR SINE MIR 12 185 -77 1204 147 0 0 chr6 86135283 86135460 -103144094 - AluJb SINE Alu -7 305 129 6812 29 11 4 chr6 86135463 86136285 -103143269 - L1PA4 LINE L1 -11 6144 5317 12375 49 3 0 chr6 86136285 86138610 -103140944 + L1PA6 LINE L1 3816 6151 -3 253 276 45 60 chr6 86139479 86139605 -103139949 + LTR33 LTR ERVL 24 147 -374 808 336 127 14 chr6 86139605 86140022 -103139532 + LTR16B LTR ERVL 1 464 0 734 324 55 4 chr6 86140044 86140319 -103139235 + LTR33 LTR ERVL 187 475 -46 849 246 84 37 chr6 86140330 86140712 -103138842 - L1MC4 LINE L1 -1 8041 7642 421 270 18 9 chr6 86141865 86141976 -103137578 - LTR28 LTR ERV1 -70 950 839 2557 175 194 84 chr6 86141976 86142809 -103136745 - LTR28 LTR ERV1 -95 925 1 252 340 10 20 chr6 86142896 86142996 -103136558 + ERVL LTR ERVL 1337 1435 -4329 2535 162 40 11 chr6 86143152 86143656 -103135898 + LTR27 LTR ERV1 3 490 -11 390 272 0 11 chr6 86143921 86144013 -103135541 - MER5B DNA MER1_type 0 178 88 2076 114 28 3 chr6 86145018 86145307 -103134247 + AluSx SINE Alu 5 300 -12 2973 100 5 0 chr6 86145556 86145965 -103133589 - L1PA10 LINE L1 -3 6165 5755 2373 55 0 0 chr6 86146491 86146764 -103132790 + AluY SINE Alu 25 297 -14 502 329 120 15 chr6 86146858 86147192 -103132362 + MLT1I LTR MaLR 41 409 0 856 201 53 91 chr6 86147262 86147580 -103131974 + MER110A LTR ERV1 1 306 -162 317 305 84 52 chr6 86147776 86147989 -103131565 + HAL1 LINE L1 421 640 -1867 1304 274 85 30 chr6 86148084 86148775 -103130779 + HAL1 LINE L1 808 1536 -971 373 247 99 25 chr6 86148796 86148958 -103130596 - L1MC5 LINE L1 -44 7917 7744 960 217 37 38 chr6 86149208 86149514 -103130040 - L1MC5 LINE L1 -1030 7012 6650 821 301 69 31 chr6 86150309 86150698 -103128856 + HAL1 LINE L1 1550 1953 -554 838 206 63 32 chr6 86150793 86151046 -103128508 + HAL1 LINE L1 2242 2502 -5 181 351 52 30 chr6 86151339 86151473 -103128081 + L2 LINE L2 3176 3312 -1 224 88 25 62 chr6 86152258 86152338 -103127216 + (TA)n Simple_repeat Simple_repeat 2 78 0 419 100 14 0 chr6 86152338 86152408 -103127146 + (CA)n Simple_repeat Simple_repeat 2 72 0 407 178 0 22 chr6 86152422 86152512 -103127042 + FLAM_C SINE Alu 51 138 -5 329 307 0 0 chr6 86152916 86152991 -103126563 - L2 LINE L2 0 3272 3198 214 428 61 15 chr6 86153097 86153228 -103126326 + L2 LINE L2 3119 3255 -17 201 100 0 0 chr6 86153615 86153645 -103125909 - L2 LINE L2 0 3272 3243 250 217 0 67 chr6 86153743 86153803 -103125751 - L2 LINE L2 0 3272 3217 839 111 0 8 chr6 86155186 86155312 -103124242 + MLT2A1 LTR ERVL 320 444 0 443 332 85 18 chr6 86155331 86155614 -103123940 - L2 LINE L2 -1794 1520 1219 310 398 37 24 chr6 86156017 86156311 -103123243 - L2 LINE L2 -2922 392 95 314 218 13 26 chr6 86156385 86156463 -103123091 - LTR33A LTR ERVL -3 520 444 2394 202 12 4 chr6 86156616 86157127 -103122427 - L1P LINE L1 -1201 4945 4431 4822 141 40 17 chr6 86157132 86158127 -103121427 + L1PA16 LINE L1 5151 6166 0 2072 141 0 3 chr6 86158305 86158604 -103120950 + AluSg SINE Alu 1 298 -12 1008 284 28 46 chr6 86158787 86159162 -103120392 - L1M3de LINE L1 -5710 943 2 17161 29 6 0 chr6 86160057 86162350 -103117204 - L1P1 LINE L1 -532 5623 3317 456 341 41 68 chr6 86164210 86164710 -103114844 - L2 LINE L2 -4 3268 2787 350 75 94 0 chr6 86365166 86365219 -102914335 + L1MC5 LINE L1 7726 7783 -178 1449 131 131 8 chr6 86365240 86365500 -102914054 + AluSx SINE Alu 11 302 -10 387 206 71 56 chr6 86365513 86365639 -102913915 + L1MC5 LINE L1 7784 7911 -50 235 182 0 23 chr6 86365666 86365710 -102913844 + MIR SINE MIR 220 262 0 2295 105 3 0 chr6 86365801 86366105 -102913449 + AluSx SINE Alu 1 305 -7 23 68 0 0 chr6 86366197 86366241 -102913313 + AT_rich Low_complexity Low_complexity 1 44 0 734 148 111 0 chr6 86366947 86367082 -102912472 + FRAM SINE Alu 5 154 -12 307 293 12 12 chr6 86367199 86367363 -102912191 + (TA)n Simple_repeat Simple_repeat 1 164 0 21 71 0 0 chr6 86367412 86367454 -102912100 + AT_rich Low_complexity Low_complexity 1 42 0 240 330 176 0 chr6 86368037 86368152 -102911402 + MIR SINE MIR 17 150 -63 1683 129 98 0 chr6 86368439 86368694 -102910860 - AluSx SINE Alu -32 280 1 936 64 0 141 chr6 86368695 86368851 -102910703 - AluSq/x SINE Alu -178 134 1 1126 180 43 5 chr6 86369444 86369655 -102909899 + MER20 DNA MER1_type 1 219 0 2016 139 39 27 chr6 86369844 86370386 -102909168 - MER51A LTR ERV1 0 634 1 316 27 0 0 chr6 86370386 86370423 -102909131 - L1PA12 LINE L1 -6087 1494 1458 6961 134 37 5 chr6 86370423 86370580 -102908974 + L1PA11 LINE L1 4166 4316 -1858 2084 125 3 7 chr6 86370580 86370876 -102908678 + AluSx SINE Alu 1 295 -17 6961 134 37 5 chr6 86370876 86372741 -102906813 + L1PA11 LINE L1 4316 6174 0 22 0 0 0 chr6 86372820 86372842 -102906712 + AT_rich Low_complexity Low_complexity 1 22 0 208 314 49 29 chr6 86372843 86372945 -102906609 - L2 LINE L2 -11 3302 3199 320 294 96 34 chr6 86372984 86373130 -102906424 - L2 LINE L2 -4 3309 3155 1198 279 99 40 chr6 86373140 86373716 -102905838 + L1MEd LINE L1 3 612 -5507 234 262 50 64 chr6 86373795 86373936 -102905618 + LTR16C LTR ERVL 350 488 -3 267 377 73 16 chr6 86373954 86374145 -102905409 - L2 LINE L2 -221 3051 2850 635 268 108 26 chr6 86374223 86374454 -102905100 + MER102b DNA MER1_type 82 331 -10 889 329 43 15 chr6 86374464 86374792 -102904762 - L2 LINE L2 -504 2810 2474 636 303 38 5 chr6 86375084 86375269 -102904285 - MIR SINE MIR -70 192 2 264 291 64 9 chr6 86375943 86376053 -102903501 + MER94 DNA DNA 11 126 -8 189 297 36 80 chr6 86377102 86377240 -102902314 - MIR SINE MIR -33 229 98 2618 155 38 70 chr6 86378485 86379015 -102900539 - MLT2B1 LTR ERVL -7 513 1 23275 146 51 12 chr6 86379015 86382836 -102896718 - ERVL-B1 LTR ERVL -7 5757 1789 2795 171 35 47 chr6 86382836 86383428 -102896126 - MER34C LTR ERV1 0 585 1 8989 179 41 36 chr6 86383428 86385210 -102894344 - ERVL-B1 LTR ERVL -3972 1792 2 2612 153 51 66 chr6 86385211 86385739 -102893815 - MLT2B1 LTR ERVL 0 520 1 274 100 160 0 chr6 86386885 86386935 -102892619 - AluJ/FLAM SINE Alu -200 102 45 432 219 0 0 chr6 86386935 86387017 -102892537 - AluJ/FLAM SINE Alu -228 84 3 908 319 90 21 chr6 86387065 86387454 -102892100 - LTR16C LTR ERVL 0 491 76 22 0 0 0 chr6 86387556 86387578 -102891976 + AT_rich Low_complexity Low_complexity 1 22 0 504 97 28 0 chr6 86387602 86387674 -102891880 + AluJo SINE Alu 78 151 -161 496 135 0 0 chr6 86387668 86387762 -102891792 + AluSg/x SINE Alu 209 302 0 * 933 176 14 0 chr6 86387762 86387942 -102891612 + AluJ SINE Alu 135 316 0 302 287 115 33 chr6 86387965 86388087 -102891467 - MIR SINE MIR -111 151 20 2432 95 0 0 chr6 86389602 86389907 -102889647 - AluSx SINE Alu -5 307 3 379 256 30 49 chr6 86390093 86390257 -102889297 + L1MC5 LINE L1 7701 7861 -100 916 239 81 0 chr6 86390260 86390469 -102889085 + MER8 DNA MER2_type 14 239 0 575 303 5 27 chr6 86392705 86392893 -102886661 + MER5A DNA MER1_type 1 184 -5 273 279 85 39 chr6 86393000 86393129 -102886425 + MIR3 SINE MIR 67 201 -7 2419 219 78 11 chr6 86393159 86393726 -102885828 + MER77 LTR ERV1 1 605 0 33 66 0 0 chr6 86394099 86394160 -102885394 + AT_rich Low_complexity Low_complexity 1 61 0 514 345 67 8 chr6 86394348 86394586 -102884968 + MIR SINE MIR 1 252 -10 522 237 44 116 chr6 86396046 86396401 -102883153 + MLT1I LTR MaLR 68 439 -11 277 227 45 61 chr6 86396413 86396545 -102883009 - MIR SINE MIR -52 210 81 237 293 86 92 chr6 86396553 86396727 -102882827 + MIR SINE MIR 29 201 -61 2737 247 64 59 chr6 86396932 86397629 -102881925 + L1ME LINE L1 155 847 -5549 1592 214 7 10 chr6 86397629 86397928 -102881626 + AluJb SINE Alu 5 302 -10 2737 247 64 59 chr6 86397928 86398408 -102881146 + L1ME LINE L1 847 1323 -5073 2151 120 0 3 chr6 86398408 86398708 -102880846 + AluSx SINE Alu 1 299 -13 2737 247 64 59 chr6 86398708 86399253 -102880301 + L1ME LINE L1 1323 1925 -4471 4760 148 9 15 chr6 86399260 86399768 -102879786 - MER44D DNA MER2_type -1882 605 229 2194 113 73 14 chr6 86399768 86400112 -102879442 - THE1B LTR MaLR 0 364 1 4760 148 9 15 chr6 86400112 86400340 -102879214 - MER44D DNA MER2_type -2258 229 1 2404 54 0 3 chr6 86400392 86400686 -102878868 + AluY SINE Alu 19 311 0 21 36 0 0 chr6 86400728 86400756 -102878798 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr6 86400779 86400801 -102878753 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 991 241 51 0 chr6 86400804 86401098 -102878456 + L1ME LINE L1 2153 2461 -3935 276 273 99 8 chr6 86401330 86401451 -102878103 + L1MEd LINE L1 25 156 -5963 949 328 45 6 chr6 86401771 86402125 -102877429 - MLT1K LTR MaLR -114 474 107 804 294 43 65 chr6 86402200 86402646 -102876908 + LTR16C LTR ERVL 52 487 -4 3511 103 12 16 chr6 86403390 86403906 -102875648 - MER75 DNA T2_type 0 514 1 1478 186 82 143 chr6 86403930 86404615 -102874939 + LTR8A LTR ERV1 1 531 -88 2274 118 0 0 chr6 86404678 86404984 -102874570 + AluSx SINE Alu 1 306 -6 1600 201 57 15 chr6 86405245 86405647 -102873907 + Charlie1b DNA MER1_type 105 523 0 1284 139 35 20 chr6 86405758 86405959 -102873595 - AluJo SINE Alu -23 289 86 21 36 0 0 chr6 86406528 86406556 -102872998 + AT_rich Low_complexity Low_complexity 1 28 0 1011 113 46 0 chr6 86406734 86406885 -102872669 + BC200 scRNA scRNA 1 158 -42 1959 139 4 0 chr6 86407178 86407458 -102872096 + AluSx SINE Alu 1 281 -31 324 0 0 0 chr6 86407458 86407494 -102872060 + (CA)n Simple_repeat Simple_repeat 1 36 0 515 142 75 0 chr6 86407944 86408050 -102871504 - LTR37A LTR ERV1 -5 421 308 430 229 127 84 chr6 86408093 86408138 -102871416 - LTR37A LTR ERV1 -112 314 272 2102 115 16 0 chr6 86408138 86408442 -102871112 + AluSq SINE Alu 1 309 -4 430 229 127 84 chr6 86408442 86408680 -102870874 - LTR37A LTR ERV1 -154 272 19 742 194 0 0 chr6 86408957 86409086 -102870468 + FLAM_C SINE Alu 6 134 -9 2162 107 0 0 chr6 86409141 86409430 -102870124 - AluSc SINE Alu -20 289 1 21 36 0 0 chr6 86409430 86409458 -102870096 + AT_rich Low_complexity Low_complexity 1 28 0 1995 138 24 0 chr6 86409600 86409889 -102869665 - AluJb SINE Alu -16 296 1 2291 99 7 3 chr6 86409956 86410258 -102869296 - AluSq SINE Alu -8 305 3 239 231 0 0 chr6 86410551 86410603 -102868951 + L2 LINE L2 3221 3272 0 1958 163 108 38 chr6 86411207 86411607 -102867947 - MSTC LTR MaLR 0 428 1 2179 120 0 16 chr6 86411939 86412255 -102867299 + AluSx SINE Alu 1 311 -1 29 0 0 0 chr6 86412848 86412877 -102866677 + AT_rich Low_complexity Low_complexity 1 29 0 2347 98 0 0 chr6 86413280 86413576 -102865978 + AluSx SINE Alu 1 296 -16 240 143 0 0 chr6 86413576 86413620 -102865934 + (TA)n Simple_repeat Simple_repeat 1 44 0 2460 86 0 0 chr6 86414636 86414938 -102864616 + AluSx SINE Alu 1 302 -10 206 178 0 22 chr6 86415305 86415350 -102864204 + A-rich Low_complexity Low_complexity 2 45 0 339 127 0 0 chr6 86415529 86415584 -102863970 - MLT2B1 LTR ERVL -1 519 465 300 153 36 18 chr6 86415584 86415695 -102863859 + (TA)n Simple_repeat Simple_repeat 2 114 0 1786 222 29 51 chr6 86415752 86416243 -102863311 - MLT2B1 LTR ERVL -40 480 1 308 293 0 9 chr6 86416394 86416500 -102863054 + L1MC4a LINE L1 3739 3843 -2303 2250 30 45 0 chr6 86416578 86416846 -102862708 + AluY SINE Alu 21 300 -11 1657 194 0 19 chr6 86417059 86417374 -102862180 - AluJo SINE Alu -3 309 1 1202 264 101 0 chr6 86417382 86417810 -102861744 + L1MC4a LINE L1 5354 5824 -1984 402 232 0 0 chr6 86417878 86417977 -102861577 + L1MC4a LINE L1 5812 5910 -1898 29 78 0 0 chr6 86418163 86418227 -102861327 + AT_rich Low_complexity Low_complexity 1 64 0 1666 175 19 121 chr6 86418493 86418957 -102860597 - MER47B DNA MER2_type -1 417 1 417 269 51 88 chr6 86419002 86419222 -102860332 + LTR33 LTR ERVL 237 445 -76 1613 160 16 87 chr6 86419222 86419453 -102860101 - MER2 DNA MER2_type -1 343 145 1901 128 49 0 chr6 86419453 86419739 -102859815 + AluSx SINE Alu 5 303 0 1613 160 16 87 chr6 86419739 86419874 -102859680 - MER2 DNA MER2_type -199 145 2 417 269 51 88 chr6 86419874 86419947 -102859607 + LTR33 LTR ERVL 445 519 -2 785 221 17 9 chr6 86420299 86420473 -102859081 + MER45A DNA AcHobo 1 174 -4 1297 246 85 85 chr6 86420530 86421106 -102858448 + MLT1E LTR MaLR 18 593 0 466 221 139 0 chr6 86422123 86422245 -102857309 + MSTD LTR MaLR 1 139 -257 2144 138 0 3 chr6 86422259 86422564 -102856990 + AluSx SINE Alu 1 304 -8 216 97 0 0 chr6 86422589 86422620 -102856934 + (TA)n Simple_repeat Simple_repeat 1 31 0 793 253 100 7 chr6 86422950 86423231 -102856323 + HAL1 LINE L1 5 311 -2196 395 313 56 28 chr6 86423547 86423748 -102855806 + HAL1 LINE L1 733 944 -1563 1941 151 7 0 chr6 86423748 86424039 -102855515 + AluSx SINE Alu 1 293 -19 395 313 56 28 chr6 86424039 86424086 -102855468 + HAL1 LINE L1 944 988 -1519 1895 156 13 19 chr6 86424087 86424401 -102855153 + AluJb SINE Alu 1 312 0 275 300 11 11 chr6 86424895 86424985 -102854569 - MIR SINE MIR -121 141 52 603 199 0 32 chr6 86425058 86425244 -102854310 + (TA)n Simple_repeat Simple_repeat 1 180 0 30 27 0 0 chr6 86425777 86425814 -102853740 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr6 86425854 86425889 -102853665 + AT_rich Low_complexity Low_complexity 1 35 0 1068 225 16 28 chr6 86426544 86426797 -102852757 + MIR SINE MIR 13 262 0 1750 119 7 52 chr6 86426838 86427124 -102852430 + AluSx SINE Alu 35 307 -5 23 54 0 0 chr6 86427536 86427573 -102851981 + AT_rich Low_complexity Low_complexity 1 37 0 1776 69 53 8 chr6 86427729 86427976 -102851578 + AluY SINE Alu 37 294 -17 1302 207 82 0 chr6 86428830 86429100 -102850454 - AluJb SINE Alu -20 292 1 224 59 29 0 chr6 86429761 86429795 -102849759 + (TG)n Simple_repeat Simple_repeat 2 36 0 282 56 0 0 chr6 86433858 86433894 -102845660 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 57 0 0 chr6 86434682 86434717 -102844837 + AT_rich Low_complexity Low_complexity 1 35 0 553 233 138 6 chr6 86434820 86434979 -102844575 + MIR SINE MIR 16 195 -67 200 197 0 16 chr6 86435927 86435988 -102843566 + GA-rich Low_complexity Low_complexity 1 60 0 773 263 101 18 chr6 86437709 86437937 -102841617 - MIR SINE MIR -3 259 13 393 22 0 0 chr6 86438511 86438557 -102840997 + (TG)n Simple_repeat Simple_repeat 2 47 0 576 267 12 12 chr6 86439735 86439907 -102839647 - MER5B DNA MER1_type -2 176 5 226 317 0 49 chr6 86440290 86440372 -102839182 - MIR SINE MIR -110 98 21 411 256 74 62 chr6 86440438 86440614 -102838940 - MIR SINE MIR -83 179 2 313 305 129 52 chr6 86443079 86443289 -102836265 - L2 LINE L2 0 3272 3047 470 206 0 0 chr6 86443905 86443997 -102835557 + FLAM_A SINE Alu 41 132 -10 2231 129 0 0 chr6 86444509 86444818 -102834736 - AluSx SINE Alu -3 309 1 22 0 0 0 chr6 86444921 86444943 -102834611 + AT_rich Low_complexity Low_complexity 1 22 0 240 295 85 8 chr6 86444968 86445097 -102834457 + L1ME LINE L1 5463 5601 -520 301 316 32 0 chr6 86445617 86445712 -102833842 - MIR3 SINE MIR -38 170 73 246 161 0 36 chr6 86446614 86446670 -102832884 + Alu SINE Alu 249 302 0 1084 202 0 16 chr6 86446701 86446889 -102832665 - AluJb SINE Alu -22 290 106 816 290 56 81 chr6 86446984 86447502 -102832052 + L1MEc LINE L1 100 629 -5767 669 55 0 0 chr6 86447502 86447593 -102831961 + L1PA8 LINE L1 6082 6172 0 816 290 56 81 chr6 86447593 86447611 -102831943 + L1MEc LINE L1 629 646 -5750 1019 87 0 7 chr6 86447611 86447760 -102831794 + (GAA)n Simple_repeat Simple_repeat 2 149 0 816 290 56 81 chr6 86447760 86448679 -102830875 + L1MEc LINE L1 646 1520 -4876 2143 128 0 13 chr6 86448708 86449014 -102830540 - AluSq SINE Alu -11 302 1 566 223 43 9 chr6 86449223 86449434 -102830120 + HAL1 LINE L1 1082 1299 -1208 3094 163 19 9 chr6 86449440 86449979 -102829575 + L1PA15-16 LINE L1 1 544 -6305 * 8484 183 55 15 chr6 86449961 86450117 -102829437 + L1PA15-16 LINE L1 1458 1606 -5243 297 0 0 0 chr6 86450117 86450150 -102829404 + (TG)n Simple_repeat Simple_repeat 2 34 0 8484 183 55 15 chr6 86450150 86452603 -102826951 + L1PA15-16 LINE L1 1606 4229 -2620 222 37 0 0 chr6 86452603 86452630 -102826924 + (CAA)n Simple_repeat Simple_repeat 1 27 0 8484 183 55 15 chr6 86452630 86452735 -102826819 + L1PA15-16 LINE L1 4229 4328 -2521 4949 152 7 15 chr6 86452726 86453588 -102825966 - THE1-int LTR MaLR -10 1570 716 * 280 188 0 42 chr6 86453961 86454057 -102825497 + CT-rich Low_complexity Low_complexity 4 95 0 342 299 27 0 chr6 86454278 86454425 -102825129 + L1MC4 LINE L1 6461 6611 -1431 466 189 135 9 chr6 86454443 86454554 -102825000 - AluJo SINE Alu -178 134 10 28 0 0 0 chr6 86454741 86454769 -102824785 + AT_rich Low_complexity Low_complexity 1 28 0 2236 161 3 3 chr6 86454771 86455163 -102824391 + L1PA10 LINE L1 117 508 -5367 23850 146 12 39 chr6 86455163 86455433 -102824121 + L1PA10 LINE L1 771 1047 -5436 2703 85 3 0 chr6 86455433 86455787 -102823767 - THE1A LTR MaLR 0 355 1 23850 146 12 39 chr6 86455787 86456506 -102823048 + L1PA10 LINE L1 1047 1784 -4699 2025 116 7 4 chr6 86456506 86456782 -102822772 + AluSx SINE Alu 25 301 -11 23850 146 12 39 chr6 86456782 86457268 -102822286 + L1PA10 LINE L1 1784 2282 -4201 2253 95 7 3 chr6 86457268 86457563 -102821991 - AluY SINE Alu -15 296 1 23850 146 12 39 chr6 86457563 86459340 -102820214 + L1PA10 LINE L1 2282 4106 -2377 2078 137 20 0 chr6 86459340 86459632 -102819922 - AluSx SINE Alu -14 298 1 23850 146 12 39 chr6 86459632 86459771 -102819783 + L1PA10 LINE L1 4106 4247 -2236 1839 124 14 28 chr6 86459771 86460114 -102819440 + AluSx SINE Alu 5 343 0 23850 146 12 39 chr6 86460114 86461708 -102817846 + L1PA10 LINE L1 4247 5601 -882 2094 141 0 10 chr6 86461708 86462012 -102817542 + AluSx SINE Alu 1 301 -11 23850 146 12 39 chr6 86462012 86462862 -102816692 + L1PA10 LINE L1 5601 6473 -10 25 20 0 59 chr6 86463573 86463624 -102815930 + AT_rich Low_complexity Low_complexity 1 48 0 1814 150 3 46 chr6 86463994 86464320 -102815234 + AluSx SINE Alu 1 312 0 1903 120 7 0 chr6 86464369 86464644 -102814910 + AluSx SINE Alu 17 293 -19 704 161 46 31 chr6 86464805 86464935 -102814619 + FLAM_A SINE Alu 1 132 -1 490 191 11 32 chr6 86465700 86465794 -102813760 - MER44D DNA MER2_type 0 605 642 1826 149 0 42 chr6 86465839 86466147 -102813407 + AluSx SINE Alu 1 295 -17 2221 158 105 0 chr6 86466155 86466603 -102812951 + LTR44 LTR ERV1 25 519 0 3282 175 43 2 chr6 86466603 86467226 -102812328 - MER44D DNA MER2_type -56 649 1 2062 115 45 0 chr6 86467325 86467613 -102811941 - AluSq SINE Alu -12 301 1 2283 111 0 6 chr6 86468495 86468810 -102810744 - AluSq SINE Alu 0 313 1 5489 150 15 11 chr6 86468811 86469599 -102809955 - L1PB2 LINE L1 -1 6150 5351 2212 96 0 3 chr6 86469599 86469892 -102809662 - AluSx SINE Alu -20 292 1 5489 150 15 11 chr6 86469892 86470454 -102809100 - L1PB2 LINE L1 -800 5351 4793 5029 192 3 10 chr6 86470452 86471542 -102808012 + L1PB2 LINE L1 3702 4783 -1363 * 2639 128 11 60 chr6 86471723 86472190 -102807364 + MER83 LTR ERV1 1 444 -4 1679 127 8 0 chr6 86472214 86472451 -102807103 + AluSx SINE Alu 1 239 -73 245 217 17 0 chr6 86472513 86472573 -102806981 + MER116 DNA Mariner 1 61 -19 973 180 0 0 chr6 86472575 86472725 -102806829 + FRAM SINE Alu 2 151 -25 317 217 12 0 chr6 86474006 86474089 -102805465 + CT-rich Low_complexity Low_complexity 1 84 0 342 195 46 35 chr6 86474089 86474176 -102805378 - AluSg/x SINE Alu -4 296 209 1337 125 0 0 chr6 86474180 86474364 -102805190 + AluSg/x SINE Alu 125 308 -2 804 127 0 16 chr6 86474534 86474660 -102804894 - FLAM_A SINE Alu -5 128 5 2283 137 17 78 chr6 86474706 86475180 -102804374 - MER65A LTR ERV1 0 445 1 2469 219 53 7 chr6 86475180 86475787 -102803767 - MER65A-int LTR ERV1 0 4871 4237 2032 125 4 0 chr6 86475795 86476104 -102803450 - AluSx SINE Alu 0 310 1 1953 222 104 4 chr6 86476106 86476588 -102802966 - MER65A-int LTR ERV1 -739 4132 3603 254 167 130 0 chr6 86476592 86476646 -102802908 - MER4-int LTR ERV1 -934 5397 5337 273 276 0 40 chr6 86476668 86476744 -102802810 - MER4-int LTR ERV1 -977 3959 3887 1636 179 9 53 chr6 86476796 86477114 -102802440 + AluJo SINE Alu 1 304 -8 2093 195 80 92 chr6 86477129 86477706 -102801848 - MER4-int LTR ERV1 -1162 4021 3439 2157 128 0 13 chr6 86477706 86478010 -102801544 + AluJb SINE Alu 1 300 -12 2093 195 80 92 chr6 86478010 86478076 -102801478 - MER4-int LTR ERV1 -1744 3439 3374 2218 103 0 7 chr6 86478076 86478377 -102801177 + AluSc SINE Alu 1 299 -10 2093 195 80 92 chr6 86478377 86479167 -102800387 - MER4-int LTR ERV1 -1809 3374 2474 466 157 0 65 chr6 86479248 86479356 -102800198 - MER4-int LTR ERV1 -2868 3730 3630 467 82 0 0 chr6 86479363 86479424 -102800130 + U6 snRNA snRNA 1 61 -46 27 0 0 0 chr6 86479433 86479460 -102800094 + AT_rich Low_complexity Low_complexity 1 27 0 1791 169 48 10 chr6 86479676 86479971 -102799583 + AluJo SINE Alu 1 306 -6 2147 117 7 0 chr6 86479971 86480271 -102799283 + AluSx SINE Alu 1 302 -10 2227 113 3 3 chr6 86480367 86480676 -102798878 + AluSx SINE Alu 1 309 -3 1227 185 30 72 chr6 86480776 86481204 -102798350 - MER4-int LTR ERV1 -4323 2435 2026 2266 116 3 0 chr6 86481319 86481630 -102797924 + AluSx SINE Alu 1 312 0 190 190 17 17 chr6 86481633 86481691 -102797863 + (CATATA)n Simple_repeat Simple_repeat 4 61 0 333 202 11 43 chr6 86481696 86481790 -102797764 - L1MC4 LINE L1 -1339 6703 6613 27 0 0 0 chr6 86482048 86482075 -102797479 + AT_rich Low_complexity Low_complexity 1 27 0 2006 92 77 0 chr6 86482311 86482584 -102796970 + AluSx SINE Alu 1 294 -18 399 277 44 44 chr6 86482824 86482961 -102796593 + MIR SINE MIR 11 147 -115 2394 74 0 10 chr6 86482961 86483260 -102796294 + AluY SINE Alu 1 296 -15 714 249 83 0 chr6 86483362 86483531 -102796023 + MER5A DNA MER1_type 7 189 0 618 146 46 204 chr6 86483607 86483930 -102795624 - ORSL DNA AcHobo 0 275 4 341 316 104 92 chr6 86485198 86485437 -102794117 - L2 LINE L2 -342 2972 2737 1758 153 7 41 chr6 86485437 86485731 -102793823 + AluJb SINE Alu 1 284 -28 341 316 104 92 chr6 86485731 86486047 -102793507 - L2 LINE L2 -577 2737 2410 2334 67 10 0 chr6 86486090 86486390 -102793164 + AluSq SINE Alu 1 303 -10 972 186 53 53 chr6 86486410 86486657 -102792897 - MLT1D LTR MaLR -7 498 252 22 35 0 0 chr6 86486679 86486708 -102792846 + AT_rich Low_complexity Low_complexity 1 29 0 2488 56 3 10 chr6 86486733 86487037 -102792517 - AluSp SINE Alu -11 302 1 265 180 0 0 chr6 86487528 86487589 -102791965 + L1ME4a LINE L1 6059 6119 -2 354 299 94 75 chr6 86488032 86488500 -102791054 - L1M2 LINE L1 -5707 1142 585 301 256 61 0 chr6 86489985 86490067 -102789487 + L2 LINE L2 3227 3313 0 1772 114 28 21 chr6 86490653 86490943 -102788611 + AluSx SINE Alu 3 294 -18 21 0 0 0 chr6 86491074 86491095 -102788459 + AT_rich Low_complexity Low_complexity 1 21 0 2250 91 3 3 chr6 86491097 86491393 -102788161 + AluSx SINE Alu 1 296 -16 237 269 139 28 chr6 86491764 86491872 -102787682 - L2 LINE L2 -173 3140 3021 1020 282 147 24 chr6 86491952 86492455 -102787099 - L2 LINE L2 -434 2880 2316 405 304 34 20 chr6 86492731 86492879 -102786675 - L2 LINE L2 0 3313 3164 869 161 116 62 chr6 86492938 86493162 -102786392 + MER46A DNA MER2_type 1 236 0 620 116 4 19 chr6 86493372 86493619 -102785935 + AluJ SINE Alu 1 293 -19 1412 163 64 46 chr6 86494491 86494773 -102784781 + AluJo SINE Alu 12 298 -14 415 184 10 10 chr6 86494784 86494882 -102784672 + GA-rich Low_complexity Low_complexity 4 101 0 638 290 54 49 chr6 86494902 86495126 -102784428 + MIR SINE MIR 18 242 -20 668 261 21 16 chr6 86495649 86495837 -102783717 - MLT1D LTR MaLR -361 194 6 2016 121 0 56 chr6 86496067 86496390 -102783164 - AluSx SINE Alu -7 305 1 296 227 15 0 chr6 86496929 86496995 -102782559 + MER81 DNA DNA 47 113 -1 234 148 66 98 chr6 86498474 86498535 -102781019 - MLT1F1 LTR MaLR -289 266 208 1396 171 9 0 chr6 86498690 86498918 -102780636 - AluJo SINE Alu -68 244 15 412 249 16 134 chr6 86499015 86499110 -102780444 + L1ME3A LINE L1 5561 5666 -504 1284 224 48 30 chr6 86499110 86499134 -102780420 + MER58B DNA MER1_type 1 23 -2397 2273 127 0 0 chr6 86499134 86499441 -102780113 + AluSx SINE Alu 1 307 -5 1284 224 48 30 chr6 86499441 86499751 -102779803 + MER58B DNA MER1_type 23 341 0 412 249 16 134 chr6 86499751 86499960 -102779594 + L1ME3A LINE L1 5666 5829 -341 2825 186 28 51 chr6 86499966 86500564 -102778990 - L1MC4 LINE L1 -140 7902 7324 2253 112 0 7 chr6 86500564 86500869 -102778685 - AluSg SINE Alu -7 303 1 2825 186 28 51 chr6 86500869 86501032 -102778522 - L1MC4 LINE L1 -718 7324 7159 1902 134 0 25 chr6 86501185 86501469 -102778085 - AluSx SINE Alu -10 302 26 2035 113 4 0 chr6 86501508 86501783 -102777771 - AluSx SINE Alu -36 276 1 891 277 68 7 chr6 86501808 86502237 -102777317 - L1M4 LINE L1 -2276 3870 3416 269 219 133 55 chr6 86502339 86502467 -102777087 - HAL1 LINE L1 -2364 143 6 2469 74 3 0 chr6 86502770 86503068 -102776486 + AluSg SINE Alu 1 299 -11 1768 153 6 48 chr6 86503168 86503482 -102776072 - AluJb SINE Alu -11 301 1 3803 231 99 83 chr6 86503494 86503563 -102775991 - L1MC3 LINE L1 -11 7774 7708 2396 76 6 19 chr6 86503563 86503880 -102775674 - AluSp SINE Alu 0 313 1 3803 231 99 83 chr6 86503880 86504435 -102775119 - L1MC3 LINE L1 -77 7708 7163 270 292 14 0 chr6 86504435 86504507 -102775047 - MLT1F1 LTR MaLR -459 108 36 3803 231 99 83 chr6 86504507 86505741 -102773813 - L1MC3 LINE L1 -622 7163 5950 243 61 0 0 chr6 86505741 86505774 -102773780 + (TG)n Simple_repeat Simple_repeat 2 34 0 3803 231 99 83 chr6 86505774 86506108 -102773446 - L1MC3 LINE L1 -1835 5950 5468 1638 181 34 7 chr6 86506108 86506406 -102773148 + AluJo SINE Alu 1 306 -6 3803 231 99 83 chr6 86506406 86506494 -102773060 - L1MC3 LINE L1 -2317 5468 5383 1569 183 73 12 chr6 86506595 86506939 -102772615 - MLT1A1 LTR MaLR 0 365 1 2290 120 0 3 chr6 86508568 86508876 -102770678 + AluSx SINE Alu 1 307 -5 776 181 161 5 chr6 86509909 86510102 -102769452 + MER58A DNA MER1_type 2 224 0 23 0 0 0 chr6 86510317 86510340 -102769214 + AT_rich Low_complexity Low_complexity 1 23 0 1064 227 156 31 chr6 86510437 86511040 -102768514 - L1MC4a LINE L1 -1866 5942 5265 464 208 36 54 chr6 86511043 86511143 -102768411 + MER104 DNA Tc2 16 113 -1785 820 178 8 0 chr6 86511143 86511272 -102768282 + FLAM_C SINE Alu 1 130 -3 464 208 36 54 chr6 86511272 86511339 -102768215 + MER104 DNA Tc2 113 180 0 1961 146 7 10 chr6 86511405 86511707 -102767847 - AluSx SINE Alu -11 301 1 2188 128 0 0 chr6 86511879 86512185 -102767369 + AluSx SINE Alu 1 306 -6 207 0 0 0 chr6 86512418 86512441 -102767113 + (TTG)n Simple_repeat Simple_repeat 2 24 0 25 51 0 0 chr6 86512473 86512512 -102767042 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 86512631 86512652 -102766902 + AT_rich Low_complexity Low_complexity 1 21 0 1251 254 48 20 chr6 86512680 86513121 -102766433 - L1MC4a LINE L1 -1900 5908 5456 2021 139 10 0 chr6 86513255 86513557 -102765997 - AluSx SINE Alu -7 305 1 652 213 24 0 chr6 86513780 86513907 -102765647 + FLAM_C SINE Alu 4 133 0 2001 95 25 11 chr6 86513982 86514267 -102765287 - AluSg SINE Alu -21 289 1 848 226 163 102 chr6 86514291 86515019 -102764535 - Charlie2a DNA MER1_type -116 2746 1939 1933 143 0 17 chr6 86515019 86515320 -102764234 - AluSx SINE Alu -16 296 1 848 226 163 102 chr6 86515320 86515583 -102763971 - Charlie2a DNA MER1_type -923 1939 1694 2187 120 10 3 chr6 86515586 86515895 -102763659 - AluSx SINE Alu -1 311 1 229 287 23 46 chr6 86515898 86515985 -102763569 - Charlie2a DNA MER1_type -2755 107 23 1299 121 10 108 chr6 86516032 86516339 -102763215 - LTR23 LTR ERV1 0 437 161 2270 98 17 3 chr6 86516364 86516660 -102762894 - AluSx SINE Alu -12 300 1 850 101 65 7 chr6 86516712 86516851 -102762703 - LTR23 LTR ERV1 -290 147 1 349 278 103 16 chr6 86517005 86517131 -102762423 - L1MEd LINE L1 -4864 1255 1119 367 206 69 10 chr6 86517220 86517322 -102762232 - L1MEd LINE L1 -5065 1054 947 232 258 333 0 chr6 86517632 86517725 -102761829 - L2 LINE L2 0 3313 3190 1116 179 38 65 chr6 86517807 86518097 -102761457 + MER58B DNA MER1_type 60 341 0 1379 132 51 17 chr6 86518202 86518437 -102761117 - Tigger7 DNA MER2_type -1295 1192 950 239 213 0 33 chr6 86518497 86518558 -102760996 + L1ME LINE L1 5719 5777 -344 405 225 0 0 chr6 86518559 86518630 -102760924 - Tigger7 DNA MER2_type -661 72 2 209 349 133 30 chr6 86520441 86520607 -102758947 - MIR3 SINE MIR -10 198 16 1253 89 0 6 chr6 86520620 86520788 -102758766 - AluSq SINE Alu -91 222 56 183 351 119 22 chr6 86522732 86522866 -102756688 - L2 LINE L2 -1 3271 3125 1459 182 37 24 chr6 86523171 86523467 -102756087 - AluJo SINE Alu -9 303 4 1671 144 27 40 chr6 86524155 86524454 -102755100 - AluSx SINE Alu -14 298 4 371 37 0 19 chr6 86524831 86524885 -102754669 + (TG)n Simple_repeat Simple_repeat 2 54 0 207 0 0 0 chr6 86524884 86524907 -102754647 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 243 0 0 0 chr6 86524907 86524934 -102754620 + (T)n Simple_repeat Simple_repeat 1 27 0 1599 176 28 17 chr6 86525058 86525348 -102754206 + AluJb SINE Alu 1 293 -19 250 217 33 0 chr6 86526258 86526318 -102753236 - L1ME LINE L1 -346 5775 5714 1281 184 56 4 chr6 86526364 86526597 -102752957 + Tigger7 DNA MER2_type 941 1185 -1302 359 238 12 0 chr6 86526602 86526686 -102752868 + Tigger7 DNA MER2_type 2407 2491 0 22 35 0 0 chr6 86526826 86526855 -102752699 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 86527029 86527066 -102752488 + AT_rich Low_complexity Low_complexity 1 37 0 1882 164 6 0 chr6 86527110 86527445 -102752109 - L1MA5 LINE L1 -6 6294 5958 829 178 0 7 chr6 86527981 86528127 -102751427 + AluJo SINE Alu 3 147 -165 509 266 0 81 chr6 86528212 86528385 -102751169 + Tigger8 DNA MER2_type 73 231 -435 828 332 80 20 chr6 86528431 86529007 -102750547 - L2 LINE L2 -1 3312 2703 204 226 12 36 chr6 86529425 86529509 -102750045 + A-rich Low_complexity Low_complexity 6 87 0 1422 121 10 0 chr6 86529817 86530016 -102749538 + AluSg/x SINE Alu 95 295 -17 606 187 42 139 chr6 86530196 86530367 -102749187 + L1MC4a LINE L1 6688 6807 -978 454 181 138 0 chr6 86530367 86530461 -102749093 + U6 snRNA snRNA 1 107 0 606 187 42 139 chr6 86530461 86530586 -102748968 + L1MC4a LINE L1 6807 6942 -843 992 187 169 51 chr6 86530590 86530759 -102748795 + L1MD3 LINE L1 7605 7753 -242 2070 136 7 0 chr6 86530759 86531069 -102748485 - AluSx SINE Alu 0 312 1 992 187 169 51 chr6 86531069 86531231 -102748323 + L1MD3 LINE L1 7753 7975 -20 349 272 79 79 chr6 86531386 86531614 -102747940 + L1MEd LINE L1 337 564 -5555 1956 133 3 17 chr6 86531618 86531919 -102747635 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr6 86532060 86532081 -102747473 + AT_rich Low_complexity Low_complexity 1 21 0 573 271 127 0 chr6 86532633 86532799 -102746755 + MIR SINE MIR 45 231 -31 2523 54 0 0 chr6 86532839 86533136 -102746418 + AluY SINE Alu 1 297 -14 394 284 18 9 chr6 86535115 86535224 -102744330 - MIR SINE MIR -152 110 1 1923 141 3 29 chr6 86535309 86535615 -102743939 + AluSx SINE Alu 1 298 -14 2166 111 3 0 chr6 86535793 86536099 -102743455 - AluSg SINE Alu -3 307 1 2123 214 48 11 chr6 86536102 86536883 -102742671 - L1MC4a LINE L1 -10 7985 6967 1508 203 17 7 chr6 86537635 86537935 -102741619 - AluJb SINE Alu -9 303 1 323 256 122 29 chr6 86537946 86538118 -102741436 - L1ME4a LINE L1 -96 6025 5838 1952 142 0 3 chr6 86538188 86538477 -102741077 + AluJb SINE Alu 11 298 -14 567 92 0 0 chr6 86538519 86538595 -102740959 - Alu SINE Alu -233 76 1 374 225 88 19 chr6 86538675 86538835 -102740719 - L1ME4a LINE L1 -382 5739 5569 969 103 0 0 chr6 86538839 86538965 -102740589 + AluSq/x SINE Alu 1 126 -186 318 50 0 0 chr6 86538968 86539008 -102740546 + (A)n Simple_repeat Simple_repeat 1 40 0 320 287 135 61 chr6 86539008 86539304 -102740250 - L1ME4a LINE L1 -543 5578 5261 2053 110 10 3 chr6 86539316 86539624 -102739930 - AluSp SINE Alu -3 310 1 1739 158 0 45 chr6 86540236 86540547 -102739007 + AluJb SINE Alu 1 297 -15 845 123 0 183 chr6 86541357 86541592 -102737962 - 7SK RNA RNA 0 193 2 1652 200 49 74 chr6 86541600 86542092 -102737462 - L1ME2 LINE L1 -10 6154 5677 2292 84 17 0 chr6 86542231 86542529 -102737025 + AluSx SINE Alu 1 303 -9 347 276 157 22 chr6 86543895 86544029 -102735525 - L2 LINE L2 0 3272 3121 24 32 0 0 chr6 86544608 86544639 -102734915 + AT_rich Low_complexity Low_complexity 1 31 0 29 70 0 0 chr6 86544859 86544916 -102734638 + AT_rich Low_complexity Low_complexity 1 57 0 1381 174 0 0 chr6 86545063 86545293 -102734261 + AluJo SINE Alu 81 310 -2 1424 233 127 51 chr6 86545951 86546615 -102732939 - L1MC4 LINE L1 -6 8036 7323 1597 216 136 89 chr6 86546634 86546923 -102732631 - L1MC4 LINE L1 -904 7138 6864 2028 124 7 0 chr6 86546923 86547222 -102732332 - AluSx SINE Alu -11 301 1 1597 216 136 89 chr6 86547222 86547580 -102731974 - L1MC4 LINE L1 -1178 6864 6461 871 51 8 17 chr6 86547738 86547855 -102731699 - L1PA11 LINE L1 -17 6157 6042 235 250 94 0 chr6 86547903 86547967 -102731587 - L3b LINE CR1 -250 1333 1264 2080 108 0 11 chr6 86548058 86548372 -102731182 + AluSq SINE Alu 1 311 0 647 199 0 34 chr6 86548578 86548724 -102730830 - FLAM_C SINE Alu 0 143 3 190 267 0 44 chr6 86549224 86549269 -102730285 + MIR3 SINE MIR 149 191 -17 21 0 0 0 chr6 86549893 86549914 -102729640 + AT_rich Low_complexity Low_complexity 1 21 0 241 193 277 48 chr6 86550243 86550409 -102729145 + L1MC/D LINE L1 5701 5904 -1904 541 219 97 0 chr6 86550450 86550564 -102728990 + FLAM_A SINE Alu 4 128 -5 224 255 0 0 chr6 86550661 86550712 -102728842 + (TA)n Simple_repeat Simple_repeat 1 51 0 438 234 72 18 chr6 86550712 86550823 -102728731 - MIR SINE MIR -30 232 116 420 271 60 15 chr6 86551077 86551210 -102728344 - L2 LINE L2 -10 3303 3165 2453 67 0 0 chr6 86551296 86551593 -102727961 + AluY SINE Alu 1 297 -14 370 344 31 12 chr6 86551652 86551812 -102727742 - L2 LINE L2 -385 2929 2767 2109 102 7 0 chr6 86552036 86552320 -102727234 + AluSx SINE Alu 1 286 -26 437 94 43 43 chr6 86552320 86552579 -102726975 + (TA)n Simple_repeat Simple_repeat 1 259 0 38 39 0 0 chr6 86552944 86552996 -102726558 + AT_rich Low_complexity Low_complexity 1 52 0 302 315 155 35 chr6 86553687 86554295 -102725259 + L1ME4a LINE L1 5255 5959 -162 30 0 0 0 chr6 86554706 86554736 -102724818 + AT_rich Low_complexity Low_complexity 1 30 0 294 306 18 0 chr6 86554985 86555096 -102724458 + L1ME LINE L1 5688 5800 -321 2172 95 0 20 chr6 86555359 86555653 -102723901 + AluSx SINE Alu 1 288 -24 388 299 120 55 chr6 86556098 86556230 -102723324 - MIR SINE MIR -26 236 83 2043 107 0 42 chr6 86556230 86556538 -102723016 - AluSq SINE Alu -18 295 1 388 299 120 55 chr6 86556538 86556622 -102722932 - MIR SINE MIR -179 83 6 35 24 0 0 chr6 86557074 86557116 -102722438 + AT_rich Low_complexity Low_complexity 1 42 0 2197 113 0 0 chr6 86557734 86558036 -102721518 + AluSg SINE Alu 2 303 -7 2427 77 0 0 chr6 86559118 86559418 -102720136 - AluY SINE Alu -11 300 1 2191 112 0 3 chr6 86559611 86559915 -102719639 - AluSq SINE Alu -10 303 1 1799 161 25 0 chr6 86560037 86560323 -102719231 + AluSx SINE Alu 1 293 -19 875 200 0 18 chr6 86560438 86560603 -102718951 - FRAM SINE Alu -5 171 10 1705 158 46 3 chr6 86560617 86560901 -102718653 - AluSq SINE Alu -17 296 1 302 298 41 64 chr6 86561063 86561234 -102718320 - L1MC4 LINE L1 0 8042 7876 311 204 75 0 chr6 86561313 86561406 -102718148 + L1MC4 LINE L1 7145 7244 -798 629 59 0 0 chr6 86561406 86561491 -102718063 + L1PA15 LINE L1 6081 6165 0 337 279 74 63 chr6 86562417 86562607 -102716947 - MIR SINE MIR -31 231 40 22 56 0 0 chr6 86563549 86563585 -102715969 + AT_rich Low_complexity Low_complexity 1 36 0 329 284 73 9 chr6 86565286 86565395 -102714159 + MIR SINE MIR 32 147 -115 1519 187 31 0 chr6 86565435 86565692 -102713862 + AluJo SINE Alu 13 277 -35 241 263 0 0 chr6 86565720 86565777 -102713777 + MIR SINE MIR 174 230 -32 259 221 43 141 chr6 86566063 86566226 -102713328 + MER112 DNA MER1_type 106 252 -8 1534 194 60 60 chr6 86566996 86567394 -102712160 + L1MDa LINE L1 788 1185 -5355 1810 161 124 11 chr6 86567396 86567750 -102711804 + MSTA LTR MaLR 1 394 -34 928 205 0 0 chr6 86567750 86567921 -102711633 - AluSg/x SINE Alu -12 300 130 246 125 0 0 chr6 86567921 86567961 -102711593 + MSTA LTR MaLR 389 428 0 252 126 253 23 chr6 86567961 86568048 -102711506 + L1MDa LINE L1 1206 1312 -5231 828 121 8 8 chr6 86568048 86568172 -102711382 + AluJo SINE Alu 11 134 -178 590 151 17 0 chr6 86568174 86568293 -102711261 + L1MDa LINE L1 1289 1409 -5131 * 1179 233 80 3 chr6 86568291 86568684 -102710870 + L1MDa LINE L1 2656 3042 -3498 36025 77 16 11 chr6 86568697 86574817 -102704737 - L1PA6 LINE L1 0 6154 11 1553 171 3 75 chr6 86574928 86575075 -102704479 + AluJo SINE Alu 1 114 -198 2197 107 7 0 chr6 86575075 86575366 -102704188 + AluSp SINE Alu 1 293 -20 1553 171 3 75 chr6 86575366 86575539 -102704015 + AluJo SINE Alu 114 298 -14 652 119 69 117 chr6 86575585 86575806 -102703748 + L1MB2 LINE L1 5362 5589 -591 2227 152 63 49 chr6 86576219 86576244 -102703310 + L1MB2 LINE L1 5622 5645 -526 1375 200 88 0 chr6 86576244 86576564 -102702990 + MER7A DNA MER2_type 1 346 0 2227 152 63 49 chr6 86576564 86576592 -102702962 + L1MB2 LINE L1 5645 5671 -500 1542 200 25 0 chr6 86576592 86576877 -102702677 - AluJo SINE Alu -20 292 1 2227 152 63 49 chr6 86576877 86577349 -102702205 + L1MB2 LINE L1 5671 6155 -16 2044 103 0 37 chr6 86577351 86577672 -102701882 - AluSx SINE Alu -3 309 1 754 142 37 15 chr6 86577675 86577809 -102701745 - FLAM_C SINE Alu -6 137 1 1275 188 58 8 chr6 86577813 86578053 -102701501 - AluJb SINE Alu -10 302 51 820 120 0 0 chr6 86578300 86578417 -102701137 + AluSg/x SINE Alu 192 308 -1 23 33 0 0 chr6 86578520 86578550 -102701004 + AT_rich Low_complexity Low_complexity 1 30 0 231 103 0 0 chr6 86578716 86578755 -102700799 + (TTTTTG)n Simple_repeat Simple_repeat 1 39 0 1834 183 0 6 chr6 86578857 86579169 -102700385 - AluJb SINE Alu -2 310 1 183 42 0 0 chr6 86579281 86579305 -102700249 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1779 164 11 7 chr6 86579308 86579589 -102699965 - AluJo SINE Alu -30 282 1 1884 148 0 16 chr6 86579865 86580169 -102699385 - AluSx SINE Alu -12 300 2 21 0 0 0 chr6 86580230 86580251 -102699303 + AT_rich Low_complexity Low_complexity 1 21 0 193 265 0 20 chr6 86580537 86580586 -102698968 - L2 LINE L2 -5 3308 3261 1057 168 5 20 chr6 86581107 86581310 -102698244 + AluSg/x SINE Alu 104 303 -9 2459 87 0 0 chr6 86581503 86581813 -102697741 + AluY SINE Alu 1 310 -1 2242 113 0 0 chr6 86582884 86583186 -102696368 - AluSg SINE Alu -7 303 2 35 24 0 0 chr6 86583804 86583846 -102695708 + AT_rich Low_complexity Low_complexity 1 42 0 391 299 120 55 chr6 86584298 86584382 -102695172 + MIR SINE MIR 6 83 -179 2108 104 0 42 chr6 86584382 86584689 -102694865 + AluSq SINE Alu 1 294 -19 391 299 120 55 chr6 86584689 86584821 -102694733 + MIR SINE MIR 83 236 -26 2219 95 0 20 chr6 86585266 86585560 -102693994 - AluSx SINE Alu -24 288 1 259 275 21 0 chr6 86585823 86585932 -102693622 - L1ME LINE L1 -321 5800 5690 30 0 0 0 chr6 86586183 86586213 -102693341 + AT_rich Low_complexity Low_complexity 1 30 0 313 312 155 35 chr6 86586624 86587232 -102692322 - L1ME4a LINE L1 -162 5959 5255 38 39 0 0 chr6 86587923 86587975 -102691579 + AT_rich Low_complexity Low_complexity 1 52 0 425 95 43 43 chr6 86588340 86588595 -102690959 + (TA)n Simple_repeat Simple_repeat 1 255 0 2132 106 7 0 chr6 86588595 86588879 -102690675 - AluSx SINE Alu -26 286 1 374 347 35 12 chr6 86589090 86589263 -102690291 + L2 LINE L2 2753 2929 -385 2079 47 20 0 chr6 86589322 86589575 -102689979 - AluY SINE Alu -14 297 40 2409 77 3 0 chr6 86589578 86589876 -102689678 - AluSp SINE Alu -14 299 1 1787 165 3 23 chr6 86590058 86590361 -102689193 + AluJo SINE Alu 1 297 -15 1150 163 9 37 chr6 86590525 86590740 -102688814 + AluJb SINE Alu 23 231 -81 1998 131 3 25 chr6 86590838 86591152 -102688402 + AluSx SINE Alu 1 307 -5 2181 98 3 17 chr6 86591697 86591992 -102687562 + AluSp SINE Alu 1 291 -22 914 215 66 13 chr6 86592153 86592544 -102687010 - L1MB8 LINE L1 -5 6173 5708 2139 125 0 16 chr6 86592586 86592898 -102686656 - AluSx SINE Alu -5 307 1 382 198 0 0 chr6 86592906 86592987 -102686567 - AluSg/x SINE Alu -1 299 219 2312 96 3 3 chr6 86593177 86593480 -102686074 + AluSx SINE Alu 1 303 -9 232 342 92 40 chr6 86594005 86594157 -102685397 + MER5A DNA MER1_type 2 161 -28 1830 163 3 3 chr6 86594201 86594496 -102685058 - AluJb SINE Alu -13 299 5 30 0 0 0 chr6 86594642 86594672 -102684882 + AT_rich Low_complexity Low_complexity 1 30 0 770 247 31 0 chr6 86595803 86595997 -102683557 - MER90 LTR ERV1 -2 612 413 552 234 126 23 chr6 86596000 86596214 -102683340 - MER90 LTR ERV1 -307 268 33 736 175 0 29 chr6 86596219 86596356 -102683198 - FLAM_A SINE Alu 0 133 1 25 75 0 0 chr6 86596361 86596414 -102683140 + AT_rich Low_complexity Low_complexity 1 53 0 981 128 14 7 chr6 86596451 86596592 -102682962 + AluSq/x SINE Alu 1 142 -171 1996 91 21 3 chr6 86596746 86597031 -102682523 - AluSx SINE Alu -22 290 1 2252 110 0 7 chr6 86597310 86597610 -102681944 - AluSx SINE Alu -14 298 1 881 129 8 0 chr6 86598266 86598398 -102681156 + FLAM_C SINE Alu 1 133 0 412 205 51 118 chr6 86598454 86598574 -102680980 - L1ME1 LINE L1 -3 6163 6059 1823 174 0 10 chr6 86598574 86598873 -102680681 + AluSx SINE Alu 5 300 -12 412 205 51 118 chr6 86598873 86598947 -102680607 - L1ME1 LINE L1 -107 6059 5982 3719 206 20 67 chr6 86599170 86600187 -102679367 - LTR5 LTR ERVK 0 969 1 2221 92 3 0 chr6 86600356 86600638 -102678916 + AluSg SINE Alu 1 283 -27 204 67 0 0 chr6 86600638 86600668 -102678886 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1175 122 0 28 chr6 86601018 86601199 -102678355 - AluSg/x SINE Alu 0 310 135 666 168 90 90 chr6 86601210 86601466 -102678088 + L1MB8 LINE L1 5921 6176 -2 1966 151 20 0 chr6 86602446 86602750 -102676804 - AluJo SINE Alu -2 310 1 1453 185 37 37 chr6 86602781 86603078 -102676476 - AluJb SINE Alu -15 297 1 1469 155 0 9 chr6 86603151 86603370 -102676184 - AluSg/x SINE Alu -11 299 83 845 175 12 41 chr6 86603527 86603698 -102675856 + AluJo SINE Alu 127 292 -20 2264 113 6 3 chr6 86603705 86604016 -102675538 + AluSx SINE Alu 1 312 0 21 0 0 0 chr6 86604174 86604195 -102675359 + AT_rich Low_complexity Low_complexity 1 21 0 205 269 0 0 chr6 86604323 86604375 -102675179 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 773 211 0 0 chr6 86604781 86604914 -102674640 + FLAM_A SINE Alu 1 133 0 2067 128 0 0 chr6 86606778 86607066 -102672488 - AluSx SINE Alu -24 288 1 545 215 22 30 chr6 86607492 86607627 -102671927 + FLAM_C SINE Alu 3 136 -7 1511 201 28 11 chr6 86607916 86608200 -102671354 + AluJb SINE Alu 1 289 -23 260 327 121 12 chr6 86609185 86609350 -102670204 + L2 LINE L2 1705 1887 -1427 478 305 86 59 chr6 86609636 86609974 -102669580 + L2 LINE L2 2702 3042 -230 733 232 68 0 chr6 86610078 86610268 -102669286 - MER58A DNA MER1_type -2 222 20 305 303 182 10 chr6 86610278 86610377 -102669177 + L2 LINE L2 3150 3265 -7 971 175 0 0 chr6 86614045 86614199 -102665355 - AluJb SINE Alu -12 300 147 774 175 117 6 chr6 86614491 86614575 -102664979 - MER46A DNA MER2_type 0 236 134 229 168 346 47 chr6 86614575 86614682 -102664872 + MER46A DNA MER2_type 4 142 -94 272 272 185 43 chr6 86614711 86614873 -102664681 + L3 LINE CR1 167 351 -1226 1861 141 0 52 chr6 86614886 86615192 -102664362 - AluJb SINE Alu -22 290 1 263 170 57 0 chr6 86615325 86615378 -102664176 + MER103 DNA DNA 46 101 -65 2378 78 0 3 chr6 86615979 86616275 -102663279 + AluY SINE Alu 1 295 -16 704 190 0 25 chr6 86616301 86616422 -102663132 + FLAM_A SINE Alu 6 123 -19 316 284 263 45 chr6 86616617 86616952 -102662602 - L2 LINE L2 -2 3311 2904 1942 105 14 48 chr6 86617001 86617183 -102662371 - AluSx SINE Alu 0 316 147 2229 56 26 30 chr6 86617183 86617485 -102662069 - AluY SINE Alu -10 301 1 1942 105 14 48 chr6 86617485 86617628 -102661926 - AluSx SINE Alu -169 147 1 308 244 33 11 chr6 86617630 86617720 -102661834 - MIR SINE MIR -47 215 124 272 308 87 56 chr6 86617969 86618038 -102661516 - L2 LINE L2 -472 2842 2777 2167 88 7 14 chr6 86618038 86618332 -102661222 + AluSq SINE Alu 1 292 -21 272 308 87 56 chr6 86618332 86618457 -102661097 - L2 LINE L2 -537 2777 2642 1744 138 106 7 chr6 86618616 86618899 -102660655 + AluJo SINE Alu 1 311 -1 927 203 0 0 chr6 86619043 86619201 -102660353 - FRAM SINE Alu -18 158 1 25 51 0 0 chr6 86619287 86619326 -102660228 + AT_rich Low_complexity Low_complexity 1 39 0 2251 112 13 0 chr6 86619702 86620005 -102659549 - AluSg SINE Alu -1 309 3 2451 71 0 0 chr6 86620038 86620335 -102659219 + AluY SINE Alu 1 297 -14 572 250 8 0 chr6 86620405 86620525 -102659029 - MER5A DNA MER1_type -22 167 47 240 148 130 19 chr6 86620575 86620629 -102658925 + HsTC2 DNA Tc2 1232 1291 -607 559 275 99 58 chr6 86621041 86621423 -102658131 - MLT1I LTR MaLR -2 407 10 282 289 131 45 chr6 86621432 86621749 -102657805 - L1MC/D LINE L1 -382 5739 5372 2217 119 0 3 chr6 86621749 86622051 -102657503 - AluSx SINE Alu -11 301 1 282 289 131 45 chr6 86622051 86622167 -102657387 - L1MC/D LINE L1 -749 5372 5267 1035 236 171 19 chr6 86622371 86622629 -102656925 + AluSg SINE Alu 1 297 -3 1906 169 0 0 chr6 86622630 86622932 -102656622 + AluJb SINE Alu 1 302 -10 312 120 0 0 chr6 86622961 86623011 -102656543 + (GTTTG)n Simple_repeat Simple_repeat 2 51 0 1907 152 3 0 chr6 86623011 86623294 -102656260 - AluJb SINE Alu -28 284 1 21 0 0 0 chr6 86623392 86623413 -102656141 + AT_rich Low_complexity Low_complexity 1 21 0 2323 94 3 3 chr6 86623554 86623852 -102655702 + AluSx SINE Alu 1 298 -14 23 33 0 0 chr6 86624006 86624036 -102655518 + AT_rich Low_complexity Low_complexity 1 30 0 277 223 122 42 chr6 86624169 86624294 -102655260 + L1M4 LINE L1 3205 3319 -2827 2018 110 50 0 chr6 86624294 86624576 -102654978 + AluSx SINE Alu 1 296 -16 277 223 122 42 chr6 86624576 86624688 -102654866 + L1M4 LINE L1 3319 3461 -2685 28 0 0 0 chr6 86624745 86624773 -102654781 + AT_rich Low_complexity Low_complexity 1 28 0 27 20 0 41 chr6 86624824 86624843 -102654711 + AT_rich Low_complexity Low_complexity 1 19 -28 1370 175 38 67 chr6 86624843 86625157 -102654397 + AluJb SINE Alu 1 305 -7 27 20 0 41 chr6 86625157 86625186 -102654368 + AT_rich Low_complexity Low_complexity 19 47 0 311 327 163 27 chr6 86625305 86625828 -102653726 + L1M4 LINE L1 4023 4616 -1530 860 206 7 7 chr6 86625860 86626015 -102653539 + FRAM SINE Alu 1 146 -30 224 30 30 0 chr6 86626021 86626054 -102653500 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2042 122 24 3 chr6 86626117 86626411 -102653143 + AluSx SINE Alu 1 300 -12 2033 140 0 0 chr6 86626671 86627000 -102652554 - AluSx SINE Alu 0 329 1 635 200 7 57 chr6 86627579 86627719 -102651835 - FLAM_A SINE Alu 0 133 1 2319 91 10 0 chr6 86627723 86628021 -102651533 - AluSq SINE Alu -12 301 1 1886 146 0 0 chr6 86628070 86628345 -102651209 + AluJb SINE Alu 3 277 -35 2622 218 107 24 chr6 86628420 86629085 -102650469 + MER21B LTR ERV1 92 811 -52 361 233 53 68 chr6 86629120 86629253 -102650301 - L1ME3A LINE L1 -27 6143 6013 619 134 0 98 chr6 86629280 86629296 -102650258 - FLAM_A SINE Alu -187 124 108 2257 133 39 120 chr6 86629296 86629342 -102650212 - MSTA LTR MaLR 0 428 380 2223 108 7 0 chr6 86629342 86629639 -102649915 + AluSx SINE Alu 1 299 -13 2257 133 39 120 chr6 86629639 86630058 -102649496 - MSTA LTR MaLR -48 380 1 619 134 0 98 chr6 86630058 86630153 -102649401 - FLAM_A SINE Alu -203 108 24 2178 130 0 16 chr6 86630169 86630477 -102649077 - AluSx SINE Alu -9 303 1 345 202 36 24 chr6 86630542 86630626 -102648928 - L1MC4 LINE L1 -1346 6696 6612 403 246 75 43 chr6 86630633 86630806 -102648748 + MLT1H LTR MaLR 12 222 -232 1868 148 3 3 chr6 86631529 86631819 -102647735 + AluJb SINE Alu 18 307 -5 22 56 0 0 chr6 86631878 86631914 -102647640 + AT_rich Low_complexity Low_complexity 1 36 0 2382 88 0 0 chr6 86632030 86632325 -102647229 + AluSc SINE Alu 1 295 -14 209 125 0 125 chr6 86632393 86632449 -102647105 - L2 LINE L2 -4 3268 3220 21 0 0 0 chr6 86632920 86632941 -102646613 + AT_rich Low_complexity Low_complexity 1 21 0 1846 144 7 0 chr6 86632985 86633255 -102646299 + AluSx SINE Alu 19 290 -22 240 163 0 0 chr6 86633256 86633299 -102646255 + (CA)n Simple_repeat Simple_repeat 2 44 0 1012 195 0 0 chr6 86633321 86633480 -102646074 - AluJo/FRAM SINE Alu -19 293 135 226 121 0 0 chr6 86633480 86633513 -102646041 - Alu SINE Alu -265 37 5 2361 90 3 0 chr6 86633520 86633820 -102645734 - AluSx SINE Alu -11 301 1 1709 151 6 53 chr6 86634044 86634363 -102645191 - AluJo SINE Alu -8 304 1 1234 193 41 16 chr6 86634365 86634609 -102644945 - AluJb SINE Alu -16 296 47 378 229 119 0 chr6 86634800 86634924 -102644630 - MIR SINE MIR -62 200 62 2221 116 57 28 chr6 86635044 86635398 -102644156 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr6 86635533 86635555 -102643999 + AT_rich Low_complexity Low_complexity 1 22 0 688 159 61 30 chr6 86635678 86635810 -102643744 - AluJo SINE Alu -176 136 1 2500 85 0 0 chr6 86635978 86636283 -102643271 - AluSq SINE Alu -8 305 1 2114 126 10 3 chr6 86636354 86636655 -102642899 + AluSx SINE Alu 1 303 -9 2333 89 3 0 chr6 86636660 86636952 -102642602 + AluY SINE Alu 2 294 -17 524 237 0 8 chr6 86637259 86637377 -102642177 - LTR67 LTR ERVL -11 546 430 236 239 0 75 chr6 86637510 86637577 -102641977 - LTR67 LTR ERVL -370 187 126 234 149 0 0 chr6 86637686 86637703 -102641851 + (GAAAA)n Simple_repeat Simple_repeat 4 20 -30 1823 180 3 3 chr6 86637703 86638014 -102641540 + AluJo SINE Alu 1 311 -1 234 149 0 0 chr6 86638014 86638043 -102641511 + (GAAAA)n Simple_repeat Simple_repeat 19 50 0 2197 97 3 10 chr6 86638068 86638367 -102641187 - AluSq SINE Alu -16 297 1 1674 162 11 18 chr6 86638448 86638732 -102640822 + AluJb SINE Alu 1 282 -30 972 145 13 0 chr6 86638763 86638915 -102640639 - MER31A LTR ERV1 -331 154 1 1859 161 78 0 chr6 86640475 86640797 -102638757 + MER7A DNA MER2_type 2 346 0 1547 133 107 22 chr6 86640878 86641149 -102638405 - AluJb SINE Alu -18 294 1 271 235 109 76 chr6 86641243 86641362 -102638192 - L2 LINE L2 -21 3292 3170 1709 179 3 20 chr6 86641826 86642123 -102637431 + AluJo SINE Alu 1 292 -20 2202 120 0 13 chr6 86642124 86642440 -102637114 + AluSx SINE Alu 1 312 0 476 375 69 14 chr6 86642481 86642830 -102636724 - L2 LINE L2 -486 2828 2461 810 153 0 69 chr6 86642872 86643016 -102636538 + AluJo SINE Alu 3 136 -176 38 93 0 0 chr6 86644155 86644263 -102635291 + GC_rich Low_complexity Low_complexity 1 108 0 25 0 0 0 chr6 86644310 86644335 -102635219 + GC_rich Low_complexity Low_complexity 1 25 0 2209 91 0 7 chr6 86645192 86645489 -102634065 - AluSg1 SINE Alu -14 295 1 1711 94 121 11 chr6 86645709 86645974 -102633580 - AluSx SINE Alu -18 294 1 24 32 0 0 chr6 86647016 86647047 -102632507 + AT_rich Low_complexity Low_complexity 1 31 0 2002 119 14 0 chr6 86647079 86647364 -102632190 - AluSx SINE Alu -1 311 23 252 315 168 8 chr6 86647517 86647661 -102631893 - MIR SINE MIR -49 159 3 290 181 0 14 chr6 86648503 86648575 -102630979 + (TA)n Simple_repeat Simple_repeat 1 71 0 1469 186 43 11 chr6 86648576 86648856 -102630698 - AluSx SINE Alu -23 289 1 2241 115 3 0 chr6 86649337 86649641 -102629913 + AluSx SINE Alu 5 309 -3 200 250 0 0 chr6 86649726 86649766 -102629788 - L2 LINE L2 -9 3304 3265 275 273 23 34 chr6 86649947 86650035 -102629519 - MIR SINE MIR -72 190 104 1832 148 10 20 chr6 86650042 86650339 -102629215 + AluJb SINE Alu 1 294 -18 346 224 82 31 chr6 86650823 86650921 -102628633 - L2 LINE L2 -1 3271 3169 824 185 0 0 chr6 86651211 86651341 -102628213 + FLAM_A SINE Alu 4 133 0 2308 101 0 0 chr6 86651429 86651727 -102627827 - AluSx SINE Alu -14 298 1 439 263 108 21 chr6 86651727 86651918 -102627636 - MIR SINE MIR 0 262 58 228 214 71 24 chr6 86651986 86652070 -102627484 - L1MC4 LINE L1 -1340 6702 6615 256 242 11 33 chr6 86652075 86652166 -102627388 + L1MC4 LINE L1 6615 6703 -1339 264 258 17 8 chr6 86652168 86652288 -102627266 + (TATATG)n Simple_repeat Simple_repeat 2 122 0 284 228 0 33 chr6 86652292 86652384 -102627170 + L1MC4 LINE L1 6615 6703 -1339 262 178 0 178 chr6 86652387 86652494 -102627060 + L1MC4 LINE L1 6615 6702 -1340 722 227 64 33 chr6 86652763 86652978 -102626576 + MIR SINE MIR 42 261 -1 1675 102 0 0 chr6 86653067 86653283 -102626271 - AluSg/x SINE Alu -7 305 90 2201 75 7 0 chr6 86653554 86653852 -102625702 - AluY SINE Alu 0 300 1 2267 102 0 0 chr6 86653969 86654264 -102625290 - AluSx SINE Alu -17 295 1 21 0 0 0 chr6 86656505 86656526 -102623028 + AT_rich Low_complexity Low_complexity 1 21 0 336 24 0 0 chr6 86656687 86656728 -102622826 + (CA)n Simple_repeat Simple_repeat 2 42 0 2333 82 0 20 chr6 86657026 86657331 -102622223 - AluY SINE Alu -12 299 1 699 281 71 0 chr6 86657331 86657555 -102621999 - MIR SINE MIR -1 261 22 869 143 30 8 chr6 86657983 86658116 -102621438 - AluJo SINE Alu -176 136 1 2311 84 10 7 chr6 86658121 86658417 -102621137 - AluSg SINE Alu -12 298 2 855 217 19 0 chr6 86659141 86659302 -102620252 - FRAM SINE Alu -11 165 2 621 138 103 9 chr6 86659712 86659828 -102619726 - Charlie1 DNA MER1_type 0 2761 2635 2044 87 0 8 chr6 86659843 86660109 -102619445 + AluY SINE Alu 34 297 -14 207 344 73 21 chr6 86660109 86660197 -102619357 - MIR SINE MIR -92 116 21 2394 111 0 0 chr6 86660265 86660571 -102618983 - AluSx SINE Alu -6 306 1 822 186 124 0 chr6 86660679 86660840 -102618714 + AluJo SINE Alu 114 294 -18 1614 188 14 14 chr6 86660840 86661132 -102618422 + AluJo SINE Alu 1 292 -20 2210 118 3 0 chr6 86661135 86661441 -102618113 + AluSq SINE Alu 1 307 -6 1052 236 66 59 chr6 86661489 86661930 -102617624 - MER20B DNA MER1_type -94 689 246 2182 117 3 3 chr6 86662122 86662420 -102617134 - AluSx SINE Alu -14 298 1 26 64 0 0 chr6 86662484 86662531 -102617023 + AT_rich Low_complexity Low_complexity 1 47 0 1688 169 20 3 chr6 86662615 86662911 -102616643 - AluJb SINE Alu -11 301 1 513 147 13 0 chr6 86663040 86663115 -102616439 - FLAM_A SINE Alu -44 98 23 500 194 75 0 chr6 86663160 86663253 -102616301 - U6 snRNA snRNA -7 100 1 2078 117 0 3 chr6 86663418 86663776 -102615778 - AluSx SINE Alu 0 357 1 2597 161 31 10 chr6 86663890 86664306 -102615248 - MSTB LTR MaLR 0 426 2 3354 145 86 20 chr6 86664307 86664714 -102614840 - MSTB-int LTR MaLR -12 1639 1179 2228 110 3 0 chr6 86664714 86665013 -102614541 + AluY SINE Alu 1 300 -11 3354 145 86 20 chr6 86665013 86665199 -102614355 - MSTB-int LTR MaLR -472 1179 1007 962 240 40 9 chr6 86665199 86665424 -102614130 + MSTB LTR MaLR 195 426 0 2020 148 0 0 chr6 86665573 86665871 -102613683 - AluSx SINE Alu -14 298 1 2010 139 10 19 chr6 86666086 86666396 -102613158 - AluJb SINE Alu -5 307 1 339 255 51 20 chr6 86666826 86666924 -102612630 + MER5B DNA MER1_type 59 159 -19 22 0 0 0 chr6 86667108 86667130 -102612424 + AT_rich Low_complexity Low_complexity 1 22 0 333 283 38 9 chr6 86668648 86668754 -102610800 - L2 LINE L2 -30 3242 3134 2223 94 7 3 chr6 86669874 86670186 -102609368 - AluSx SINE Alu 0 315 3 218 351 13 0 chr6 86671236 86671313 -102608241 + L2 LINE L2 3234 3311 -2 303 28 0 0 chr6 86671748 86671784 -102607770 + (TG)n Simple_repeat Simple_repeat 2 37 0 710 195 0 0 chr6 86671784 86671907 -102607647 - FLAM_C SINE Alu -20 123 1 359 355 88 20 chr6 86671911 86672162 -102607392 - L1MC4a LINE L1 -1853 5955 5688 1748 196 0 28 chr6 86672510 86672831 -102606723 - AluJo SINE Alu 0 312 1 581 220 8 61 chr6 86673117 86673249 -102606305 - FLAM_A SINE Alu -5 128 4 2382 60 0 10 chr6 86673407 86673706 -102605848 + AluY SINE Alu 1 296 -15 21 57 0 0 chr6 86673831 86673866 -102605688 + AT_rich Low_complexity Low_complexity 1 35 0 1976 156 16 16 chr6 86673869 86674177 -102605377 + AluJb SINE Alu 1 308 -4 621 228 0 0 chr6 86674177 86674291 -102605263 - AluJo/FLAM SINE Alu -186 116 3 2145 133 0 0 chr6 86674314 86674608 -102604946 + AluSx SINE Alu 1 294 -18 2250 119 0 3 chr6 86675253 86675563 -102603991 + AluSx SINE Alu 1 309 -3 208 309 82 10 chr6 86675779 86675876 -102603678 - L2 LINE L2 0 3272 3169 2361 97 0 16 chr6 86675899 86676207 -102603347 - AluSx SINE Alu -9 303 1 201 236 81 88 chr6 86676337 86676485 -102603069 - L2 LINE L2 -189 3083 2937 2281 88 10 3 chr6 86676744 86677038 -102602516 + AluSg SINE Alu 11 306 -4 2072 134 0 16 chr6 86678004 86678311 -102601243 - AluJo SINE Alu -10 302 1 2208 113 0 0 chr6 86679054 86679365 -102600189 - AluY SINE Alu 0 311 1 2607 48 0 13 chr6 86679587 86679898 -102599656 + AluY SINE Alu 2 308 -3 242 200 0 20 chr6 86680163 86680213 -102599341 - L2 LINE L2 -2 3311 3263 219 231 0 15 chr6 86680531 86680568 -102598986 + T-rich Low_complexity Low_complexity 4 41 -26 695 159 166 7 chr6 86680568 86680719 -102598835 - FAM SINE Alu 0 175 1 219 231 0 15 chr6 86680719 86680746 -102598808 + T-rich Low_complexity Low_complexity 41 67 0 1089 249 68 71 chr6 86680754 86681019 -102598535 - L1M4 LINE L1 -1073 5073 4809 2183 93 3 36 chr6 86681019 86681320 -102598234 - AluSx SINE Alu -21 291 1 1089 249 68 71 chr6 86681320 86681672 -102597882 - L1M4 LINE L1 -1337 4809 4458 1199 188 107 73 chr6 86681705 86682199 -102597355 - L1MC4 LINE L1 0 8042 7532 1760 214 99 31 chr6 86682209 86682771 -102596783 + L1ME1 LINE L1 5435 5957 -209 495 0 0 0 chr6 86682771 86682826 -102596728 + (TC)n Simple_repeat Simple_repeat 2 56 0 294 29 0 0 chr6 86682825 86682860 -102596694 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 1760 214 99 31 chr6 86682826 86682860 -102596694 + L1ME1 LINE L1 5957 5987 -179 1943 153 10 3 chr6 86682860 86683154 -102596400 - AluJb SINE Alu -16 296 1 1760 214 99 31 chr6 86683154 86683222 -102596332 + L1ME1 LINE L1 5987 6161 -5 1227 132 81 5 chr6 86683274 86683471 -102596083 + AluSg/x SINE Alu 83 294 -16 948 163 0 0 chr6 86683691 86683832 -102595722 - AluSq/x SINE Alu -172 141 1 571 239 0 31 chr6 86684262 86684421 -102595133 - MER104 DNA Tc2 0 180 27 2391 162 61 4 chr6 86684714 86685190 -102594364 - L1MA6 LINE L1 0 6300 5798 417 240 0 54 chr6 86685239 86685368 -102594186 - L1ME LINE L1 -453 5668 5547 2122 108 10 16 chr6 86685469 86685774 -102593780 - AluSx SINE Alu -9 303 1 2224 84 3 3 chr6 86686040 86686327 -102593227 - AluY SINE Alu -24 287 1 21 0 0 0 chr6 86686554 86686575 -102592979 + AT_rich Low_complexity Low_complexity 1 21 0 192 250 38 88 chr6 86687466 86687546 -102592008 + L3 LINE CR1 151 226 -1351 1703 192 0 26 chr6 86687878 86688180 -102591374 - AluJo SINE Alu -12 300 7 2229 102 24 0 chr6 86688417 86688711 -102590843 + AluSx SINE Alu 1 301 -11 326 336 129 31 chr6 86688878 86689134 -102590420 + HAL1 LINE L1 657 937 -1570 630 311 81 37 chr6 86689140 86689709 -102589845 + HAL1 LINE L1 1067 1660 -847 313 244 67 33 chr6 86689715 86689805 -102589749 + HAL1 LINE L1 1800 1892 -615 207 88 0 0 chr6 86689826 86689860 -102589694 + (A)n Simple_repeat Simple_repeat 1 34 0 3002 114 14 35 chr6 86691530 86691726 -102587828 - L1PA16 LINE L1 -9 6157 5959 882 148 0 22 chr6 86691726 86691861 -102587693 - FLAM_C SINE Alu 0 133 2 3002 114 14 35 chr6 86691861 86692156 -102587398 - L1PA16 LINE L1 -207 5959 5676 2109 125 0 16 chr6 86692173 86692485 -102587069 - AluSx SINE Alu -3 309 3 1374 98 0 65 chr6 86692524 86692620 -102586934 - L1PA16 LINE L1 -474 5692 5591 2152 143 0 0 chr6 86692620 86692928 -102586626 - AluSx SINE Alu -4 308 1 1374 98 0 65 chr6 86692928 86693077 -102586477 - L1PA16 LINE L1 -575 5591 5463 * 2022 180 14 5 chr6 86693075 86693508 -102586046 - L1PA16 LINE L1 -992 5154 4718 2680 224 24 3 chr6 86693530 86694196 -102585358 + L1 LINE L1 3805 4484 -1662 2231 104 0 3 chr6 86694203 86694501 -102585053 + AluSq SINE Alu 3 299 -14 241 278 0 0 chr6 86695165 86695219 -102584335 + L2 LINE L2 3215 3268 -4 340 82 0 0 chr6 86695584 86695633 -102583921 + Alu SINE Alu 251 299 -3 544 281 16 5 chr6 86695633 86695818 -102583736 - L2 LINE L2 -895 2419 2233 1903 165 0 7 chr6 86695826 86696117 -102583437 - AluSx SINE Alu -23 289 1 192 205 0 26 chr6 86696158 86696197 -102583357 - L2 LINE L2 -1086 2228 2191 880 131 24 72 chr6 86696197 86696409 -102583145 - THE1C LTR MaLR 0 375 198 180 354 31 15 chr6 86696412 86696607 -102582947 - L2 LINE L2 -1668 1646 1449 2382 92 0 0 chr6 86696763 86697058 -102582496 + AluSx SINE Alu 1 295 -17 2260 118 0 0 chr6 86697291 86697595 -102581959 + AluSx SINE Alu 1 304 -8 1798 164 7 23 chr6 86697882 86698186 -102581368 - AluJb SINE Alu -11 301 3 348 195 104 0 chr6 86698938 86699015 -102580539 + L2 LINE L2 3179 3263 -9 1407 217 0 8 chr6 86699282 86699549 -102580005 - AluJb SINE Alu -1 311 47 180 245 94 0 chr6 86699720 86699773 -102579781 + L3 LINE CR1 947 1004 -573 330 224 0 0 chr6 86699911 86699978 -102579576 + L2 LINE L2 3182 3248 -65 460 274 22 15 chr6 86699984 86700119 -102579435 + L2 LINE L2 3178 3313 0 306 300 0 11 chr6 86700259 86700349 -102579205 - L1MC4 LINE L1 -1339 6703 6615 * 309 270 8 95 chr6 86700336 86700435 -102579119 + L1MC4 LINE L1 6614 6701 -1341 1948 115 63 3 chr6 86700435 86700721 -102578833 - AluSg SINE Alu -7 303 1 309 270 8 95 chr6 86700721 86700747 -102578807 + L1MC4 LINE L1 6701 6728 -1314 1516 126 0 14 chr6 86701605 86701820 -102577734 + AluSg/x SINE Alu 87 298 -14 3656 70 38 14 chr6 86701903 86702402 -102577152 + MER9 LTR ERVK 1 511 0 631 234 63 75 chr6 86702499 86702833 -102576721 - HAL1 LINE L1 -892 1615 1286 1275 91 30 10 chr6 86702970 86703167 -102576387 - MER41B LTR ERV1 0 635 435 * 1487 101 26 0 chr6 86703166 86703394 -102576160 - MER41A LTR ERV1 -319 235 2 328 167 14 14 chr6 86703481 86703553 -102576001 - MER31B LTR ERV1 0 466 395 1238 228 33 46 chr6 86703577 86703967 -102575587 - MLT1B LTR MaLR -5 385 1 1593 156 15 74 chr6 86703992 86704052 -102575502 - MER31B LTR ERV1 -82 384 322 3415 119 9 73 chr6 86704052 86704693 -102574861 - MER4A LTR ERV1 0 600 1 1593 156 15 74 chr6 86704693 86704825 -102574729 - MER31B LTR ERV1 -144 322 184 4556 138 31 53 chr6 86704825 86705197 -102574357 - MER4D LTR ERV1 0 903 524 1931 124 3 65 chr6 86705197 86705520 -102574034 + AluSq SINE Alu 1 303 -10 4556 138 31 53 chr6 86705520 86706068 -102573486 - MER4D LTR ERV1 -379 524 3 1593 156 15 74 chr6 86706068 86706277 -102573277 - MER31B LTR ERV1 -282 184 6 982 171 0 0 chr6 86706278 86706424 -102573130 + FRAM SINE Alu 1 146 -30 679 305 46 20 chr6 86706607 86706955 -102572599 - HAL1 LINE L1 -2150 357 1 402 319 72 22 chr6 86707282 86707420 -102572134 - MIR SINE MIR -71 191 47 1595 179 0 35 chr6 86707422 86707712 -102571842 - AluJo SINE Alu 0 312 33 24 0 0 0 chr6 86707712 86707736 -102571818 + AT_rich Low_complexity Low_complexity 1 24 0 4376 117 32 8 chr6 86707741 86708465 -102571089 - L1MA3 LINE L1 -11 6294 5554 593 78 107 0 chr6 86708473 86708576 -102570978 - L1M1 LINE L1 -4453 3112 2999 * 6559 155 117 19 chr6 86708574 86709929 -102569625 - L1M1 LINE L1 -6065 1500 14 231 214 0 0 chr6 86709931 86709973 -102569581 - AluJo SINE Alu -257 43 2 1508 165 40 50 chr6 86710003 86710300 -102569254 + AluJb SINE Alu 5 298 -14 893 316 137 12 chr6 86710447 86710951 -102568603 - L2 LINE L2 -585 2729 2163 768 201 161 15 chr6 86711508 86711782 -102567772 + L1ME2 LINE L1 5712 6025 -139 608 237 104 0 chr6 86711783 86711918 -102567636 - FRAM SINE Alu -20 156 8 376 241 11 0 chr6 86711925 86712040 -102567514 + L1ME2 LINE L1 6053 6170 0 2509 78 0 0 chr6 86712443 86712751 -102566803 + AluY SINE Alu 1 308 -3 21 0 0 0 chr6 86714505 86714526 -102565028 + AT_rich Low_complexity Low_complexity 1 21 0 227 232 36 0 chr6 86714949 86715005 -102564549 + MER112 DNA MER1_type 1 58 -202 1702 175 39 3 chr6 86715191 86715476 -102564078 + AluJo SINE Alu 1 295 -17 2158 124 0 3 chr6 86715784 86716090 -102563464 - AluSq SINE Alu -8 305 1 255 31 0 0 chr6 86717044 86717076 -102562478 + (CA)n Simple_repeat Simple_repeat 2 33 0 24 0 0 0 chr6 86717079 86717103 -102562451 + AT_rich Low_complexity Low_complexity 1 24 0 2169 129 0 0 chr6 86717512 86717815 -102561739 - AluSq SINE Alu -8 305 3 22 88 0 0 chr6 86717866 86717923 -102561631 + AT_rich Low_complexity Low_complexity 1 57 0 22 70 0 0 chr6 86718675 86718718 -102560836 + AT_rich Low_complexity Low_complexity 1 43 0 205 244 210 70 chr6 86719103 86719332 -102560222 + MIR3 SINE MIR 2 262 0 210 71 0 0 chr6 86719970 86719998 -102559556 + (CA)n Simple_repeat Simple_repeat 1 28 0 2135 125 10 0 chr6 86720182 86720478 -102559076 - AluSx SINE Alu -13 299 1 2130 133 0 0 chr6 86720732 86721033 -102558521 + AluSq SINE Alu 3 303 -10 21 0 0 0 chr6 86721275 86721296 -102558258 + AT_rich Low_complexity Low_complexity 1 21 0 943 113 0 0 chr6 86722226 86722350 -102557204 + AluSg/x SINE Alu 177 300 -12 192 368 53 23 chr6 86723426 86723559 -102555995 + MIR3 SINE MIR 59 195 -13 320 361 33 0 chr6 86724144 86724266 -102555288 + L2 LINE L2 3183 3308 -5 1557 169 45 10 chr6 86727042 86727332 -102552222 + AluJo SINE Alu 5 304 -8 1554 214 0 20 chr6 86728409 86728712 -102550842 - AluJo SINE Alu -14 298 2 2174 141 44 105 chr6 86728728 86729252 -102550302 - L1MB2 LINE L1 -9 6162 5671 223 47 0 47 chr6 86729617 86729660 -102549894 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1718 142 7 35 chr6 86729664 86729953 -102549601 - AluJo SINE Alu -31 281 1 612 178 19 3 chr6 86730718 86730845 -102548709 - L1PA16 LINE L1 0 6165 6039 2174 104 3 3 chr6 86730863 86731152 -102548402 - AluSx SINE Alu -23 289 1 21 0 0 0 chr6 86731160 86731181 -102548373 + AT_rich Low_complexity Low_complexity 1 21 0 218 343 55 0 chr6 86731440 86731513 -102548041 + L2 LINE L2 2957 3033 -280 289 232 232 0 chr6 86731558 86731653 -102547901 + L2 LINE L2 3196 3312 -1 308 315 96 7 chr6 86731701 86731847 -102547707 - Charlie2 DNA MER1_type -2669 193 35 356 375 87 40 chr6 86731860 86731991 -102547563 + L2 LINE L2 2580 2703 -611 2385 106 0 0 chr6 86731991 86732303 -102547251 - AluSx SINE Alu 0 312 1 356 375 87 40 chr6 86732303 86732550 -102547004 + L2 LINE L2 2703 2976 -338 229 354 143 11 chr6 86732605 86732780 -102546774 - MIR SINE MIR -31 231 34 704 144 0 25 chr6 86732817 86732935 -102546619 - FLAM_A SINE Alu -12 130 16 2037 128 0 13 chr6 86733472 86733777 -102545777 - AluSx SINE Alu -11 301 1 2320 103 0 0 chr6 86734070 86734380 -102545174 - AluSg SINE Alu 0 310 1 2285 91 7 0 chr6 86734600 86734908 -102544646 - AluY SINE Alu -1 310 1 239 204 20 0 chr6 86735500 86735549 -102544005 + L2 LINE L2 3256 3305 -8 2250 103 0 7 chr6 86735580 86735881 -102543673 - AluSg SINE Alu -11 299 1 2102 120 0 17 chr6 86736827 86737127 -102542427 + AluJo SINE Alu 1 295 -17 290 298 131 0 chr6 86737498 86737582 -102541972 - L2 LINE L2 -11 3261 3167 297 75 0 0 chr6 86737604 86737644 -102541910 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr6 86739305 86739327 -102540227 + AT_rich Low_complexity Low_complexity 1 22 0 1763 164 0 4 chr6 86740831 86741099 -102538455 + AluJb SINE Alu 1 267 -45 2076 138 0 7 chr6 86741123 86741420 -102538134 + AluSx SINE Alu 1 295 -17 22 56 0 0 chr6 86741454 86741490 -102538064 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr6 86741703 86741732 -102537822 + AT_rich Low_complexity Low_complexity 1 29 0 342 142 80 71 chr6 86743276 86743389 -102536165 - L1MA7 LINE L1 -5 6286 6173 289 159 0 32 chr6 86743501 86743564 -102535990 - L1MD1 LINE L1 -26 6216 6156 1279 190 9 0 chr6 86744483 86744704 -102534850 + MER58A DNA MER1_type 1 223 -1 5085 89 20 0 chr6 86744890 86745598 -102533956 - LTR30 LTR ERV1 0 722 1 204 159 68 0 chr6 86745739 86745783 -102533771 - MIR SINE MIR -95 167 121 807 226 128 18 chr6 86745995 86746221 -102533333 + MIR SINE MIR 2 252 -10 1611 138 40 61 chr6 86746894 86747033 -102532521 + AluJb SINE Alu 1 141 -171 207 69 0 0 chr6 86747033 86747062 -102532492 + (CA)n Simple_repeat Simple_repeat 2 30 0 1611 138 40 61 chr6 86747062 86747218 -102532336 + AluJb SINE Alu 141 290 -22 4787 165 36 12 chr6 86747720 86748994 -102530560 - L1MB8 LINE L1 -9 6169 4865 795 244 17 0 chr6 86749222 86749398 -102530156 - MIR SINE MIR -21 241 63 1862 158 57 25 chr6 86749485 86749839 -102529715 + Tigger4(Zombi) DNA MER2_type 166 530 -2201 828 134 114 7 chr6 86749835 86749984 -102529570 + Tigger4(Zombi) DNA MER2_type 2567 2731 0 * 26 0 0 0 chr6 86753432 86753458 -102526096 + AT_rich Low_complexity Low_complexity 1 26 0 206 338 14 0 chr6 86753490 86753564 -102525990 - MIR3 SINE MIR -4 204 130 2015 136 17 0 chr6 86753697 86753991 -102525563 + AluSx SINE Alu 1 299 -13 2115 131 0 0 chr6 86754676 86754973 -102524581 - AluSx SINE Alu -15 297 1 2308 86 27 0 chr6 86755041 86755333 -102524221 - AluSx SINE Alu -12 300 1 192 343 30 59 chr6 86757196 86757365 -102522189 + L2 LINE L2 2897 3060 -212 789 179 7 0 chr6 86758335 86758475 -102521079 + AluJb SINE Alu 154 294 -18 2194 117 0 7 chr6 86758850 86759157 -102520397 - AluSc SINE Alu -4 305 1 219 88 0 0 chr6 86759432 86759466 -102520088 + (CAA)n Simple_repeat Simple_repeat 3 36 0 450 265 210 0 chr6 86760172 86760372 -102519182 - MIR SINE MIR 0 262 21 897 158 0 0 chr6 86760497 86760630 -102518924 - FLAM_C SINE Alu 0 133 1 540 152 0 0 chr6 86760630 86760709 -102518845 - 5S rRNA rRNA -42 79 1 1900 162 0 3 chr6 86760729 86761038 -102518516 - AluJb SINE Alu -4 308 1 186 194 0 0 chr6 86761299 86761335 -102518219 - MER5B DNA MER1_type -108 70 35 469 196 10 0 chr6 86761337 86761439 -102518115 + U13 snRNA snRNA 1 103 -1 327 107 18 18 chr6 86761451 86761507 -102518047 - MER5B DNA MER1_type -122 56 1 24 0 0 0 chr6 86761560 86761584 -102517970 + AT_rich Low_complexity Low_complexity 1 24 0 297 0 0 0 chr6 86761649 86761682 -102517872 + (TG)n Simple_repeat Simple_repeat 2 34 0 894 198 24 24 chr6 86762038 86762245 -102517309 - MER3 DNA MER1_type 0 209 3 30 59 0 0 chr6 86762488 86762539 -102517015 + AT_rich Low_complexity Low_complexity 1 51 0 234 0 0 0 chr6 86764444 86764470 -102515084 + (T)n Simple_repeat Simple_repeat 1 26 0 331 265 48 0 chr6 86764714 86764797 -102514757 + MIR SINE MIR 20 106 -156 184 358 0 0 chr6 86764830 86764897 -102514657 + MIR SINE MIR 182 248 -14 2476 70 0 3 chr6 86765205 86765507 -102514047 + AluY SINE Alu 1 301 -10 21 89 0 0 chr6 86766147 86766203 -102513351 + AT_rich Low_complexity Low_complexity 1 56 0 255 321 99 27 chr6 86766563 86766623 -102512931 - MARNA DNA Mariner -8 578 524 1808 163 0 7 chr6 86766623 86766918 -102512636 - AluJb SINE Alu -14 298 6 255 321 99 27 chr6 86766918 86767078 -102512476 - MARNA DNA Mariner -62 524 342 2181 118 0 13 chr6 86767216 86767529 -102512025 + AluSx SINE Alu 1 309 -3 261 175 127 0 chr6 86767563 86767626 -102511928 + MARNA DNA Mariner 450 520 -66 2168 94 31 0 chr6 86768159 86768446 -102511108 - AluSx SINE Alu -16 296 1 572 226 19 0 chr6 86768831 86768937 -102510617 + FLAM_A SINE Alu 1 108 -34 198 0 0 0 chr6 86768943 86768965 -102510589 + (GAAAA)n Simple_repeat Simple_repeat 5 26 0 306 349 224 14 chr6 86769359 86769453 -102510101 + L2 LINE L2 982 1055 -2259 527 217 137 43 chr6 86769453 86769614 -102509940 + MER69A DNA AcHobo 2 177 0 306 349 224 14 chr6 86769614 86770499 -102509055 + L2 LINE L2 1055 2167 -1147 652 196 30 96 chr6 86770502 86770650 -102508904 + MER3 DNA MER1_type 1 134 -75 1700 142 16 65 chr6 86770650 86770960 -102508594 - AluJb SINE Alu -17 295 1 652 196 30 96 chr6 86770960 86771010 -102508544 + MER3 DNA MER1_type 134 186 -23 231 205 0 0 chr6 86771022 86771061 -102508493 - MER3 DNA MER1_type -127 82 44 675 332 134 17 chr6 86771126 86771773 -102507781 + L2 LINE L2 2578 3312 -1 2205 73 17 11 chr6 86772354 86772641 -102506913 - AluSp SINE Alu -19 294 6 2164 119 0 0 chr6 86772646 86772940 -102506614 - AluSx SINE Alu -18 294 1 253 297 212 39 chr6 86773607 86773937 -102505617 - L1MC/D LINE L1 -1976 5832 5446 262 235 52 70 chr6 86774049 86774164 -102505390 - L1P LINE L1 -1155 4991 4879 189 0 0 0 chr6 86774617 86774638 -102504916 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1501 181 7 45 chr6 86774640 86774928 -102504626 - AluJb SINE Alu -33 279 3 1544 115 4 4 chr6 86775750 86775976 -102503578 + MER30 DNA MER1_type 5 230 0 1636 152 0 8 chr6 86776343 86776593 -102502961 + AluJb SINE Alu 1 248 -64 3502 151 49 31 chr6 86777895 86778571 -102500983 - Ricksha_a DNA DNA -9 1167 480 2102 139 41 21 chr6 86778571 86778960 -102500594 - Ricksha_a DNA DNA -756 425 29 477 240 53 7 chr6 86779576 86779726 -102499828 + MER103 DNA DNA 1 157 -9 3044 177 46 63 chr6 86779863 86780559 -102498995 - LTR8 LTR ERV1 0 691 8 1678 132 46 49 chr6 86780625 86780826 -102498728 + AluSx SINE Alu 1 202 -110 2374 68 7 0 chr6 86780826 86781119 -102498435 - AluY SINE Alu -16 295 1 1678 132 46 49 chr6 86781119 86781221 -102498333 + AluSx SINE Alu 202 303 -9 900 52 0 9 chr6 86782618 86782733 -102496821 + L1PA11 LINE L1 6049 6162 -12 2320 108 3 0 chr6 86782735 86783041 -102496513 + AluSc SINE Alu 1 307 -2 2391 73 0 19 chr6 86783065 86783379 -102496175 + AluY SINE Alu 1 308 -3 1894 140 28 0 chr6 86783385 86783671 -102495883 + AluSx SINE Alu 5 298 -14 1560 180 31 7 chr6 86783706 86783995 -102495559 + AluJb SINE Alu 1 296 -16 284 204 37 56 chr6 86784248 86784356 -102495198 - L1MC/D LINE L1 -654 5467 5362 2128 108 0 20 chr6 86784790 86785086 -102494468 - AluSx SINE Alu -22 290 1 442 88 69 39 chr6 86785286 86785388 -102494166 - L1MB2 LINE L1 -2 6169 6065 2200 98 7 0 chr6 86785719 86786016 -102493538 - AluSx SINE Alu -11 301 3 2247 103 10 10 chr6 86786724 86787035 -102492519 + AluY SINE Alu 1 311 0 414 283 155 14 chr6 86787130 86787349 -102492205 + MIR SINE MIR 13 262 0 22 0 0 0 chr6 86788188 86788210 -102491344 + AT_rich Low_complexity Low_complexity 1 22 0 409 75 149 0 chr6 86788997 86789064 -102490490 - MADE1 DNA Mariner 0 80 4 2245 98 0 7 chr6 86790892 86791189 -102488365 - AluSc SINE Alu -14 295 1 21 0 0 0 chr6 86791253 86791274 -102488280 + AT_rich Low_complexity Low_complexity 1 21 0 1378 264 130 18 chr6 86791637 86792197 -102487357 - MER20B DNA MER1_type -150 633 11 31 68 0 0 chr6 86793639 86793698 -102485856 + AT_rich Low_complexity Low_complexity 1 59 0 42004 36 25 1 chr6 86795115 86801119 -102478435 - L1PA3 LINE L1 -7 6148 1 2106 141 0 0 chr6 86801767 86802079 -102477475 + AluJb SINE Alu 1 312 0 369 62 0 0 chr6 86803155 86803203 -102476351 + (TG)n Simple_repeat Simple_repeat 2 49 0 22 0 0 0 chr6 86803759 86803781 -102475773 + AT_rich Low_complexity Low_complexity 1 22 0 800 147 15 44 chr6 86804423 86804559 -102474995 - AluJo SINE Alu -176 136 5 22 35 0 0 chr6 86806546 86806575 -102472979 + AT_rich Low_complexity Low_complexity 1 29 0 194 253 55 77 chr6 86812888 86812979 -102466575 + MIR SINE MIR 122 210 -52 222 213 43 0 chr6 86813361 86813408 -102466146 - MIR SINE MIR -62 146 98 2218 77 39 3 chr6 86814211 86814496 -102465058 + AluY SINE Alu 1 295 -16 1783 98 8 4 chr6 86814497 86814751 -102464803 + MER61-int LTR ERV1 3001 3255 -1962 7843 111 25 9 chr6 86814857 86816168 -102463386 - MER61A-int LTR ERV1 -2519 2698 1320 2395 158 58 39 chr6 86816263 86816802 -102462752 - MER61A-int LTR ERV1 -4668 549 1 660 150 0 35 chr6 86816803 86816916 -102462638 - MER61A LTR ERV1 0 343 235 1344 80 32 0 chr6 86817020 86817208 -102462346 - MLT2A1 LTR ERVL -250 194 1 1637 158 0 15 chr6 86818362 86818635 -102460919 + AluSx SINE Alu 5 273 -39 30 0 0 0 chr6 86818647 86818677 -102460877 + AT_rich Low_complexity Low_complexity 1 30 0 667 183 28 0 chr6 86818677 86818819 -102460735 + L1MA9 LINE L1 6131 6276 -36 689 191 0 0 chr6 86819277 86819392 -102460162 + FLAM_C SINE Alu 1 115 -28 303 28 0 0 chr6 86819394 86819430 -102460124 + (CA)n Simple_repeat Simple_repeat 2 37 0 488 280 53 40 chr6 86819584 86819905 -102459649 + HAL1b LINE L1 965 1289 -59 873 169 12 19 chr6 86820057 86820217 -102459337 + MSTD LTR MaLR 201 359 -37 2643 146 69 24 chr6 86820217 86820753 -102458801 + L1MA8 LINE L1 5727 6286 -5 1762 147 48 0 chr6 86820764 86821069 -102458485 + AluSx SINE Alu 1 318 0 4704 65 0 0 chr6 86822181 86822785 -102456769 + L1PA4 LINE L1 5552 6155 0 703 157 21 29 chr6 86822980 86823682 -102455872 + L1MA8 LINE L1 5373 6244 -47 2543 162 19 5 chr6 86823682 86824102 -102455452 + MSTB LTR MaLR 1 426 0 703 157 21 29 chr6 86824102 86824143 -102455411 + L1MA8 LINE L1 6244 6284 -7 234 162 0 0 chr6 86824798 86824835 -102454719 - MER96B DNA MER1_type? -189 228 192 545 188 42 42 chr6 86825150 86825294 -102454260 + MER96B DNA MER1_type? 273 416 -1 2212 99 3 22 chr6 86826237 86826560 -102452994 - L1P3 LINE L1 -6141 320 4 466 170 21 0 chr6 86826692 86826786 -102452768 - MER53 DNA DNA -93 96 1 213 222 19 0 chr6 86827086 86827140 -102452414 + (TG)n Simple_repeat Simple_repeat 1 55 0 925 235 163 52 chr6 86827627 86828027 -102451527 - L2 LINE L2 0 3313 2870 603 231 209 4 chr6 86828027 86828261 -102451293 + HAL1 LINE L1 1584 1865 -642 822 149 50 50 chr6 86828356 86828537 -102451017 - AluJb SINE Alu -19 293 113 614 233 110 0 chr6 86828701 86828864 -102450690 + LTR16C LTR ERVL 311 491 0 301 217 229 0 chr6 86828864 86828947 -102450607 + L2 LINE L2 3171 3272 0 210 363 57 24 chr6 86830661 86830785 -102448769 - L2 LINE L2 -13 3259 3132 342 379 50 16 chr6 86830897 86831079 -102448475 - L2 LINE L2 -218 3054 2867 211 273 121 30 chr6 86831217 86831316 -102448238 - L2 LINE L2 -4 3309 3202 2080 126 3 0 chr6 86831819 86832105 -102447449 - AluSx SINE Alu -25 287 1 288 130 0 37 chr6 86832532 86832586 -102446968 - MER94 DNA DNA -80 54 3 261 342 60 0 chr6 86832667 86832816 -102446738 - L3 LINE CR1 -166 1411 1254 258 318 0 0 chr6 86833523 86833589 -102445965 - L3 LINE CR1 -204 1373 1308 30 69 0 0 chr6 86833694 86833752 -102445802 + AT_rich Low_complexity Low_complexity 1 58 0 633 244 61 17 chr6 86834026 86834206 -102445348 + MIR SINE MIR 60 247 -15 21 0 0 0 chr6 86834363 86834384 -102445170 + AT_rich Low_complexity Low_complexity 1 21 0 243 257 209 19 chr6 86834819 86834924 -102444630 - L2 LINE L2 0 3313 3189 210 350 0 0 chr6 86835049 86835109 -102444445 + L2 LINE L2 3213 3272 0 2055 263 107 21 chr6 86835516 86836178 -102443376 + L2 LINE L2 1067 1785 -1529 3804 105 26 14 chr6 86836193 86836772 -102442782 + L1PA13 LINE L1 5578 6163 0 207 114 0 0 chr6 86836878 86836913 -102442641 + (TC)n Simple_repeat Simple_repeat 2 36 0 2088 106 10 10 chr6 86837573 86837865 -102441689 + AluSx SINE Alu 1 292 -20 214 220 70 156 chr6 86841478 86841664 -102437890 + MIR SINE MIR 65 234 -28 465 100 160 30 chr6 86841727 86841827 -102437727 + MER53 DNA DNA 1 113 -76 472 254 61 5 chr6 86841828 86842025 -102437529 + L1M4 LINE L1 2147 2354 -3792 677 253 86 0 chr6 86842033 86842219 -102437335 + MER63A DNA MER1_type 9 210 0 1457 280 122 36 chr6 86842219 86843724 -102435830 + L1M4 LINE L1 2347 3979 -2167 2330 169 44 0 chr6 86843845 86844277 -102435277 - L1M2 LINE L1 -556 5756 5306 3215 92 16 5 chr6 86844280 86844728 -102434826 + L1PA11 LINE L1 5719 6171 -3 308 225 194 23 chr6 86845191 86845320 -102434234 - L1ME4a LINE L1 -172 5949 5799 296 0 51 0 chr6 86845380 86845419 -102434135 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 544 245 21 0 chr6 86845426 86845569 -102433985 - L1M2 LINE L1 -811 5335 5190 338 256 30 113 chr6 86845883 86846051 -102433503 - MIR SINE MIR -107 155 2 2337 110 13 26 chr6 86847794 86848175 -102431379 + L1P LINE L1 4368 4743 -1403 204 364 15 0 chr6 86849630 86849696 -102429858 + L2 LINE L2 3186 3252 -20 450 327 60 19 chr6 86849735 86850102 -102429452 + L1ME4a LINE L1 5563 5944 -177 2036 140 0 0 chr6 86850539 86850882 -102428672 + AluSx SINE Alu 11 312 0 368 417 62 18 chr6 86850904 86851180 -102428374 + L1PB4 LINE L1 87 374 -6475 314 338 43 30 chr6 86851218 86851483 -102428071 + L1M2b LINE L1 388 1954 -5255 304 311 20 40 chr6 86851545 86851696 -102427858 + L1PB4 LINE L1 698 845 -6004 237 341 0 0 chr6 86851777 86851862 -102427692 + L1PB4 LINE L1 882 966 -5883 213 39 0 0 chr6 86851968 86851994 -102427560 + (T)n Simple_repeat Simple_repeat 1 26 0 9638 241 111 25 chr6 86852017 86855941 -102423613 + L1PB4 LINE L1 999 4584 -2274 2061 141 0 10 chr6 86855941 86856245 -102423309 - AluSx SINE Alu -9 303 3 9638 241 111 25 chr6 86856245 86856993 -102422561 + L1PB4 LINE L1 4584 5266 -1592 3574 132 2 14 chr6 86856993 86857576 -102421978 + L1PA16 LINE L1 5582 6157 -9 9638 241 111 25 chr6 86857576 86858398 -102421156 + L1PB4 LINE L1 5266 6846 -12 219 129 47 47 chr6 86858518 86858603 -102420951 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 204 217 0 0 chr6 86859422 86859468 -102420086 - L2 LINE L2 0 3313 3268 447 330 93 32 chr6 86860267 86860643 -102418911 - HAL1 LINE L1 -23 2720 2322 257 191 0 179 chr6 86860777 86860832 -102418722 - MIR SINE MIR -186 76 39 1847 146 3 35 chr6 86860832 86861148 -102418406 - AluJb SINE Alu -6 306 1 257 191 0 179 chr6 86861148 86861176 -102418378 - MIR SINE MIR -223 39 8 1349 276 95 0 chr6 86861213 86861657 -102417897 - L1M4c LINE L1 -481 2262 1571 300 243 84 9 chr6 86861665 86861772 -102417782 - HAL1 LINE L1 -2350 157 43 24 67 0 0 chr6 86862230 86862275 -102417279 + AT_rich Low_complexity Low_complexity 1 45 0 180 179 0 0 chr6 86863227 86863266 -102416288 + CT-rich Low_complexity Low_complexity 1 39 0 254 271 118 49 chr6 86863346 86863490 -102416064 + MIR SINE MIR 108 261 -1 183 222 0 22 chr6 86865192 86865237 -102414317 + L3 LINE CR1 178 221 -1356 2306 97 3 0 chr6 86866702 86867000 -102412554 + AluSx SINE Alu 1 299 -13 596 213 167 13 chr6 86867079 86867229 -102412325 + MER5A DNA MER1_type 16 188 -1 463 273 63 21 chr6 86867233 86867376 -102412178 - MIR3 SINE MIR -40 168 20 375 270 80 7 chr6 86868859 86868996 -102410558 + U1 snRNA snRNA 1 147 -18 379 243 77 61 chr6 86869175 86869356 -102410198 + L2 LINE L2 2619 2802 -512 2004 183 35 165 chr6 86869359 86870509 -102409045 - Charlie2 DNA MER1_type -7 2855 1856 431 235 78 54 chr6 86871562 86871728 -102407826 + LTR33 LTR ERVL 9 178 -343 595 251 81 40 chr6 86871799 86872046 -102407508 + LTR33 LTR ERVL 261 517 -4 1468 156 111 22 chr6 86873827 86874142 -102405412 - MER61A LTR ERV1 0 343 1 1348 119 35 0 chr6 86874142 86874344 -102405210 - MER61A-int LTR ERV1 0 5217 5009 6143 88 34 12 chr6 86874344 86875209 -102404345 - MER61A-int LTR ERV1 -403 4814 3931 781 161 70 111 chr6 86875311 86875554 -102404000 - MER61A LTR ERV1 -110 233 1 493 269 171 27 chr6 86876427 86876988 -102402566 - L1ME4a LINE L1 -5 6116 5475 26 30 0 0 chr6 86877717 86877750 -102401804 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr6 86878641 86878665 -102400889 + AT_rich Low_complexity Low_complexity 1 24 0 233 109 22 0 chr6 86879669 86879715 -102399839 + (TA)n Simple_repeat Simple_repeat 1 47 0 5046 112 18 14 chr6 86880010 86880786 -102398768 - MER4E LTR ERV1 0 779 1 1957 166 7 0 chr6 86881141 86881449 -102398105 + AluJb SINE Alu 1 310 -2 218 239 15 45 chr6 86881751 86881818 -102397736 + L2 LINE L2 3207 3271 -1 454 172 81 0 chr6 86882991 86883090 -102396464 + Tigger7 DNA MER2_type 1 107 -2380 1592 143 162 12 chr6 86883092 86883413 -102396141 + Tigger7 DNA MER2_type 2219 2587 0 2088 109 36 10 chr6 86883451 86883755 -102395799 + AluSq SINE Alu 2 313 0 555 171 0 8 chr6 86883830 86883947 -102395607 + L1MA10 LINE L1 6219 6334 0 244 310 139 92 chr6 86884319 86884722 -102394832 + L2 LINE L2 2844 3265 -7 261 319 170 15 chr6 86885214 86885349 -102394205 + MIR3 SINE MIR 32 187 -21 777 234 53 10 chr6 86885376 86885585 -102393969 - MIR SINE MIR -41 221 4 2340 110 3 0 chr6 86885664 86885974 -102393580 - AluSq SINE Alu -2 311 1 383 330 28 0 chr6 86887341 86887450 -102392104 - MIR SINE MIR -101 161 50 2834 12 0 0 chr6 86889579 86889931 -102389623 + L1PA2 LINE L1 5827 6178 0 30 27 0 0 chr6 86890907 86890944 -102388610 + AT_rich Low_complexity Low_complexity 1 37 0 331 102 0 0 chr6 86892253 86892302 -102387252 - MER41A LTR ERV1 -505 49 1 377 257 130 53 chr6 86892381 86892745 -102386809 - MLT1J LTR MaLR -68 443 5 446 303 0 28 chr6 86893244 86893389 -102386165 - MIR3 SINE MIR -59 149 9 2211 113 10 3 chr6 86895783 86896093 -102383461 + AluSx SINE Alu 1 312 0 2181 105 13 10 chr6 86898052 86898356 -102381198 + AluSq SINE Alu 1 305 -8 800 191 40 6 chr6 86899504 86899677 -102379877 + MER5A DNA MER1_type 1 179 -10 1925 150 3 12 chr6 86900103 86900437 -102379117 + L1PA7 LINE L1 5819 6149 -5 1442 178 35 9 chr6 86900439 86900754 -102378800 + L1PA15 LINE L1 5675 5997 -168 579 200 158 14 chr6 86900763 86900978 -102378576 + MER20B DNA MER1_type 538 783 0 367 279 146 13 chr6 86900978 86901136 -102378418 - MIR SINE MIR -73 189 11 27 0 0 0 chr6 86902466 86902493 -102377061 + AT_rich Low_complexity Low_complexity 1 27 0 5772 45 0 0 chr6 86902512 86903223 -102376331 - L1PA2 LINE L1 -4 6151 5441 35908 52 28 2 chr6 86903632 86908534 -102371020 - L1PA14 LINE L1 -13 6148 2 1335 189 119 0 chr6 86908846 86909148 -102370406 - MER58B DNA MER1_type 0 341 4 419 209 99 20 chr6 86909954 86910155 -102369399 - L1MC5 LINE L1 -128 7833 7617 325 250 9 65 chr6 86910161 86910269 -102369285 - L1MC5 LINE L1 -406 7555 7454 5155 56 3 2 chr6 86910283 86910928 -102368626 - L1PA5 LINE L1 -15 6139 5494 3350 78 4 0 chr6 86910928 86911403 -102368151 - L1PA5 LINE L1 -1255 4891 4415 1592 172 57 33 chr6 86911563 86911929 -102367625 - THE1C LTR MaLR 0 375 1 223 312 46 18 chr6 86911986 86912095 -102367459 - MIR SINE MIR -3 259 148 829 182 0 0 chr6 86912115 86912247 -102367307 - FLAM_C SINE Alu 0 133 2 376 345 29 14 chr6 86912251 86912390 -102367164 - MIR SINE MIR -102 160 20 294 335 53 19 chr6 86913841 86914050 -102365504 - L2 LINE L2 -1316 1998 1783 180 0 0 0 chr6 86914115 86914135 -102365419 + (T)n Simple_repeat Simple_repeat 1 20 0 346 288 114 0 chr6 86914488 86914620 -102364934 - MIR SINE MIR -45 217 71 2701 198 31 13 chr6 86915538 86916225 -102363329 + L1 LINE L1 4117 4815 -1331 * 5139 135 7 5 chr6 86916216 86917080 -102362474 + L1PA16 LINE L1 5301 6166 0 475 270 119 6 chr6 86917240 86917559 -102361995 - L1ME3A LINE L1 -218 5952 5415 2003 165 13 49 chr6 86917562 86917634 -102361920 - THE1C LTR MaLR -1 374 301 2245 126 0 0 chr6 86917634 86917935 -102361619 - AluSg SINE Alu -8 302 2 2003 165 13 49 chr6 86917935 86918250 -102361304 - THE1C LTR MaLR -74 301 1 9235 136 31 8 chr6 86918252 86919786 -102359768 - THE1C-int LTR MaLR -12 1568 1 2292 119 18 52 chr6 86919786 86920174 -102359380 - THE1C LTR MaLR 0 375 1 261 281 10 0 chr6 86920174 86920270 -102359284 - L1P LINE L1 -735 5416 5320 475 283 128 20 chr6 86920375 86920679 -102358875 - L1ME3A LINE L1 -1303 4843 4507 454 303 7 21 chr6 86920681 86920823 -102358731 + L2 LINE L2 1827 1966 -1348 665 311 133 51 chr6 86920970 86921437 -102358117 + L2 LINE L2 2804 3308 -5 27 73 0 0 chr6 86921621 86921676 -102357878 + AT_rich Low_complexity Low_complexity 1 55 0 12642 92 8 9 chr6 86922840 86925043 -102354511 + L1P3 LINE L1 3487 5687 -467 7990 194 32 25 chr6 86925143 86927707 -102351847 - L1PBa LINE L1 -1664 5198 2618 1027 140 27 11 chr6 86927707 86927910 -102351644 + LTR29 LTR ERV1 394 595 0 549 224 0 0 chr6 86928196 86928303 -102351251 + U6 snRNA snRNA 1 107 0 14066 220 17 10 chr6 86928309 86929725 -102349829 + L1P4 LINE L1 1492 2897 -3269 1906 141 19 50 chr6 86929725 86930101 -102349453 + THE1B LTR MaLR 1 364 0 14066 220 17 10 chr6 86930101 86932856 -102346698 + L1P4 LINE L1 2897 5689 -477 12136 121 40 31 chr6 86932856 86935965 -102343589 + L1P3 LINE L1 250 3525 -2936 201 39 0 0 chr6 86936510 86936536 -102343018 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 332 225 22 22 chr6 86937410 86937499 -102342055 + L2 LINE L2 3225 3313 0 22 35 0 0 chr6 86937668 86937697 -102341857 + AT_rich Low_complexity Low_complexity 1 29 0 7201 68 12 4 chr6 86937754 86943728 -102335826 + L1PA5 LINE L1 1 6146 -8 180 0 0 0 chr6 86943728 86943748 -102335806 + (TA)n Simple_repeat Simple_repeat 2 21 0 6328 59 7 1 chr6 86944052 86944901 -102334653 - L1PA6 LINE L1 0 6154 5301 5501 84 7 12 chr6 86944881 86945694 -102333860 - L1PA6 LINE L1 -1320 4826 4018 * 573 281 105 29 chr6 86945973 86946211 -102333343 - MIR SINE MIR 0 262 7 403 304 113 0 chr6 86946404 86946598 -102332956 - LTR33A LTR ERVL -11 512 297 224 250 91 83 chr6 86946977 86947109 -102332445 - L2 LINE L2 -5 3308 3176 1621 290 104 5 chr6 86947176 86947732 -102331822 + MLT2E LTR ERVL 3 613 -15 201 39 0 0 chr6 86948316 86948342 -102331212 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 332 225 22 22 chr6 86949216 86949305 -102330249 + L2 LINE L2 3225 3313 0 22 35 0 0 chr6 86949474 86949503 -102330051 + AT_rich Low_complexity Low_complexity 1 29 0 35874 73 38 3 chr6 86949560 86954685 -102324869 + L1P LINE L1 1 5302 -844 5263 71 2 11 chr6 86954947 86956322 -102323232 - L1PA5 LINE L1 -130 6024 4661 252 272 11 54 chr6 86956482 86956574 -102322980 + MLT1J LTR MaLR 101 188 -323 404 285 104 14 chr6 86956632 86956776 -102322778 + MLT1J2 LTR MaLR 249 405 -45 256 247 0 65 chr6 86956861 86956938 -102322616 + L2 LINE L2 3192 3263 -9 1634 149 117 3 chr6 86957693 86958002 -102321552 - MER2 DNA MER2_type 0 344 1 2502 36 3 7 chr6 86958590 86958891 -102320663 + AluY SINE Alu 1 300 -11 343 360 83 71 chr6 86958993 86959329 -102320225 - L2 LINE L2 -1 3271 2932 1579 183 10 17 chr6 86960743 86961032 -102318522 + AluJo SINE Alu 1 287 -25 23 33 0 0 chr6 86962229 86962259 -102317295 + AT_rich Low_complexity Low_complexity 1 30 0 2504 94 11 0 chr6 86962259 86962622 -102316932 - L1PB1 LINE L1 -5 6146 5780 3909 80 56 5 chr6 86962675 86963584 -102315970 + MER11A LTR ERVK 165 1266 0 2857 78 2 2 chr6 86963584 86963995 -102315559 - L1PB1 LINE L1 -1363 4783 4373 180 111 0 0 chr6 86964016 86964043 -102315511 + (A)n Simple_repeat Simple_repeat 1 27 0 1223 142 24 5 chr6 86965231 86965442 -102314112 - MLT1B LTR MaLR -12 378 164 867 298 143 37 chr6 86965457 86965992 -102313562 - L2 LINE L2 -14 3299 2716 325 311 66 26 chr6 86966692 86966843 -102312711 + MIR3 SINE MIR 35 191 -17 1388 225 20 35 chr6 86967596 86967622 -102311932 - MLT2B3 LTR ERVL -76 478 453 1530 163 235 9 chr6 86967622 86967808 -102311746 - MSTA LTR MaLR 0 428 285 324 48 0 0 chr6 86967808 86967850 -102311704 + (GA)n Simple_repeat Simple_repeat 1 42 0 1530 163 235 9 chr6 86967850 86968012 -102311542 - MSTA LTR MaLR -143 285 1 1388 225 20 35 chr6 86968012 86968327 -102311227 - MLT2B3 LTR ERVL -101 453 142 734 194 5 48 chr6 86968303 86968489 -102311065 - MLT1B LTR MaLR -212 178 1 * 255 286 27 55 chr6 86968660 86968880 -102310674 + MER112 DNA MER1_type 8 221 -39 261 286 135 81 chr6 86969553 86969924 -102309630 - L2 LINE L2 -410 2904 2514 982 232 96 16 chr6 86970349 86970724 -102308830 + L1P4 LINE L1 11 415 -7166 4022 264 70 37 chr6 86970879 86972558 -102306996 + L1P4 LINE L1 878 2611 -4970 1544 178 33 29 chr6 86972560 86972835 -102306719 - AluJo SINE Alu -31 281 6 13280 198 23 11 chr6 86972880 86976474 -102303080 + L1P4 LINE L1 3528 7162 -441 41505 60 4 2 chr6 86976618 86982759 -102296795 - L1PA3 LINE L1 -5 6150 1 1181 264 75 42 chr6 86983130 86983676 -102295878 + MER20B DNA MER1_type 165 728 -55 727 247 31 66 chr6 86983786 86984045 -102295509 - MIR SINE MIR 0 262 13 2223 116 0 0 chr6 86984964 86985258 -102294296 - AluSg SINE Alu -16 294 1 285 222 49 0 chr6 86986248 86986329 -102293225 - L1MC4 LINE L1 -1339 6703 6619 217 290 0 16 chr6 86987339 86987352 -102292202 - L2 LINE L2 0 3313 3301 2154 126 0 0 chr6 86987352 86987638 -102291916 - AluSx SINE Alu -26 286 1 217 290 0 16 chr6 86987638 86987686 -102291868 - L2 LINE L2 -12 3301 3253 1774 80 4 0 chr6 86988341 86988578 -102290976 - L1PA8 LINE L1 -1 6171 5934 202 258 33 60 chr6 86988808 86988901 -102290653 + GA-rich Low_complexity Low_complexity 4 93 -57 4789 185 13 11 chr6 86988901 86989818 -102289736 + MER49 LTR ERV1 5 923 0 202 258 33 60 chr6 86989818 86989875 -102289679 + GA-rich Low_complexity Low_complexity 93 150 0 2459 167 37 9 chr6 86991637 86992074 -102287480 + LTR42 LTR ERVL 1 449 -46 2300 84 7 0 chr6 86992079 86992377 -102287177 - AluSq SINE Alu -13 300 1 832 160 92 92 chr6 86992586 86992867 -102286687 - L1MA7 LINE L1 0 6291 6011 276 113 0 19 chr6 86992887 86992940 -102286614 - L1MA9 LINE L1 -1 6311 6260 201 306 73 16 chr6 86993021 86993145 -102286409 - L2 LINE L2 0 3313 3183 969 217 11 0 chr6 86994796 86994971 -102284583 - MER45A DNA AcHobo 0 178 2 1458 151 24 10 chr6 86995223 86995425 -102284129 - L1MA9 LINE L1 -12 6300 6091 361 77 231 0 chr6 86995425 86995490 -102284064 + MADE1 DNA Mariner 1 80 0 1458 151 24 10 chr6 86995490 86995579 -102283975 - L1MA9 LINE L1 -221 6091 6005 462 275 20 34 chr6 86997075 86997224 -102282330 + L2 LINE L2 3167 3313 0 247 229 29 43 chr6 86999977 87000047 -102279507 + MER5A DNA MER1_type 109 177 -12 27 0 0 0 chr6 87000878 87000905 -102278649 + AT_rich Low_complexity Low_complexity 1 27 0 7265 46 0 12 chr6 87001741 87003051 -102276503 - L1PA5 LINE L1 0 6154 4852 966 127 0 0 chr6 87003151 87003293 -102276261 - FLAM_C SINE Alu -1 142 1 2348 123 31 0 chr6 87003293 87003652 -102275902 + L1PA15 LINE L1 5788 6157 -8 336 348 21 14 chr6 87005714 87005855 -102273699 + MIR SINE MIR 84 225 -37 4053 272 14 17 chr6 87007141 87008523 -102271031 + L1PA16 LINE L1 1613 2990 -3156 * 6350 71 2 0 chr6 87008522 87009338 -102270216 - L1PA6 LINE L1 -4 6150 5333 7617 182 48 70 chr6 87009338 87010190 -102269364 + L1PA16 LINE L1 2980 3850 -2316 2525 136 44 5 chr6 87010190 87010602 -102268952 - MSTA LTR MaLR 0 428 1 7617 182 48 70 chr6 87010602 87010937 -102268617 + L1PA16 LINE L1 3850 4191 -1975 795 69 0 0 chr6 87010937 87011039 -102268515 + L1PB1 LINE L1 6046 6147 -4 7617 182 48 70 chr6 87011039 87012299 -102267255 + L1PA16 LINE L1 4191 5344 -822 3192 88 51 14 chr6 87012299 87012786 -102266768 - L1PA13 LINE L1 -2 6161 5657 7617 182 48 70 chr6 87012786 87013591 -102265963 + L1PA16 LINE L1 5344 6166 0 961 136 9 61 chr6 87013850 87014064 -102265490 - L1MA8 LINE L1 -22 6269 6067 345 259 34 68 chr6 87014789 87014936 -102264618 + L2 LINE L2 2595 2736 -578 1543 177 16 10 chr6 87015538 87016156 -102263398 - L1PA14 LINE L1 -13 6148 5328 2366 122 46 58 chr6 87016163 87016662 -102262892 - L1MA8 LINE L1 -4 6287 5795 276 363 43 43 chr6 87016856 87017090 -102262464 - L2 LINE L2 -5 3267 3034 887 212 6 6 chr6 87017090 87017255 -102262299 + AluJo SINE Alu 122 286 -26 213 39 0 0 chr6 87017810 87017836 -102261718 + (TA)n Simple_repeat Simple_repeat 2 27 0 7002 54 0 5 chr6 87017836 87018788 -102260766 - L1PA6 LINE L1 -10 6144 5192 39 22 0 0 chr6 87018788 87018834 -102260720 + AT_rich Low_complexity Low_complexity 1 46 0 1616 202 35 0 chr6 87019861 87020148 -102259406 + AluJo SINE Alu 1 297 -15 295 250 14 14 chr6 87020267 87020339 -102259215 - MER115 DNA AcHobo -8 685 614 * 387 232 99 0 chr6 87020322 87020464 -102259090 - Zaphod DNA AcHobo -3241 790 635 1998 158 0 0 chr6 87020593 87020890 -102258664 + AluSx SINE Alu 1 297 -15 5457 101 11 11 chr6 87020951 87021746 -102257808 + L1PA10 LINE L1 5370 6164 -4 459 209 11 11 chr6 87022019 87022105 -102257449 - LTR16C LTR ERVL -13 478 393 1074 236 32 73 chr6 87022105 87022554 -102257000 + MLT2B1 LTR ERVL 1 411 -143 2230 134 30 21 chr6 87022554 87022926 -102256628 + THE1C LTR MaLR 1 375 0 1074 236 32 73 chr6 87022926 87023047 -102256507 + MLT2B1 LTR ERVL 411 535 -19 280 196 7 0 chr6 87023083 87023145 -102256409 + MLT2B3 LTR ERVL 451 553 -1 355 318 61 8 chr6 87023147 87023279 -102256275 - LTR16C LTR ERVL -117 374 236 11327 31 0 0 chr6 87023920 87026025 -102253529 + L1PA3 LINE L1 4051 6155 0 201 74 0 0 chr6 87026045 87026072 -102253482 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4117 190 52 17 chr6 87026292 87027648 -102251906 - L1MB2 LINE L1 0 6171 4786 322 284 90 7 chr6 87027652 87027941 -102251613 - HAL1 LINE L1 -837 1670 1221 249 57 0 0 chr6 87028231 87028266 -102251288 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 9702 38 2 0 chr6 87028309 87030264 -102249290 - L1PA3 LINE L1 -3 6152 4197 602 128 73 9 chr6 87030392 87030501 -102249053 + FRAM SINE Alu 40 155 -21 377 203 0 0 chr6 87030597 87030666 -102248888 - HAL1 LINE L1 -1622 885 817 4580 135 18 6 chr6 87030734 87031467 -102248087 + L1P LINE L1 3409 4150 -1996 1069 291 170 19 chr6 87031509 87032086 -102247468 - HAL1 LINE L1 -1819 688 25 8974 88 9 1 chr6 87032164 87033960 -102245594 + L1PA7 LINE L1 4097 5908 -246 1986 220 25 26 chr6 87034062 87034675 -102244879 + L1M1 LINE L1 3008 3619 -3946 312 295 0 27 chr6 87034685 87034797 -102244757 + L1 LINE L1 4775 4883 -1263 * 1035 201 11 33 chr6 87034794 87035067 -102244487 + L1M1 LINE L1 3640 3906 -3659 2381 63 6 6 chr6 87035167 87035484 -102244070 + L1PA6 LINE L1 5836 6152 -2 180 0 0 0 chr6 87035788 87035808 -102243746 + (TA)n Simple_repeat Simple_repeat 2 21 0 4637 51 2 5 chr6 87035808 87036393 -102243161 - L1PA5 LINE L1 -8 6146 5564 2688 67 6 14 chr6 87037808 87038169 -102241385 + L1PA7 LINE L1 5793 6150 -4 526 223 76 13 chr6 87038205 87038429 -102241125 + L1M1 LINE L1 4464 4701 -2864 2708 196 74 8 chr6 87038433 87039085 -102240469 + L1M1 LINE L1 5206 5900 -1665 6865 30 0 2 chr6 87039220 87040044 -102239510 - L1P LINE L1 -1766 4380 3559 12001 48 0 4 chr6 87040144 87041670 -102237884 - L1P LINE L1 -789 5357 3838 25 51 0 0 chr6 87041777 87041816 -102237738 + AT_rich Low_complexity Low_complexity 1 39 0 395 309 68 58 chr6 87042080 87042478 -102237076 - L2 LINE L2 -670 2644 2243 1176 325 139 14 chr6 87042823 87043555 -102235999 - L3 LINE CR1 -8 1569 746 2009 124 3 20 chr6 87043557 87043855 -102235699 - AluSq SINE Alu -20 293 1 1896 152 57 0 chr6 87044149 87044464 -102235090 - MER7A DNA MER2_type -6 340 10 222 300 25 0 chr6 87045053 87045133 -102234421 + (TATG)n Simple_repeat Simple_repeat 3 84 0 400 274 43 17 chr6 87045743 87045860 -102233694 - L2 LINE L2 -13 3300 3181 2414 65 0 29 chr6 87046283 87046592 -102232962 - AluY SINE Alu -11 300 1 236 377 18 9 chr6 87046631 87046745 -102232809 + L2 LINE L2 2725 2839 -475 1256 256 0 14 chr6 87046880 87047165 -102232389 - MLT1A1 LTR MaLR 0 365 85 31440 60 3 1 chr6 87047265 87051332 -102228222 + L1P LINE L1 221 4294 -1852 572 347 83 0 chr6 87051483 87051699 -102227855 - MIR SINE MIR -14 248 15 26 0 0 0 chr6 87052700 87052726 -102226828 + AT_rich Low_complexity Low_complexity 1 26 0 1169 169 0 0 chr6 87052794 87052972 -102226582 + AluJb SINE Alu 124 301 -11 207 0 0 0 chr6 87053109 87053132 -102226422 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1381 176 44 0 chr6 87053138 87053410 -102226144 - L1MC3 LINE L1 -12 7773 7490 3750 159 41 45 chr6 87053542 87054351 -102225203 + L1MA9 LINE L1 5484 6289 -23 13005 91 1 12 chr6 87054351 87056953 -102222601 + L1PA7 LINE L1 3566 6154 0 22 0 0 0 chr6 87056954 87056976 -102222578 + AT_rich Low_complexity Low_complexity 1 22 0 382 174 37 112 chr6 87057024 87057185 -102222369 - L1ME4a LINE L1 -12 6109 5961 1915 109 4 0 chr6 87058194 87058450 -102221104 + AluSq SINE Alu 3 259 -54 1580 151 39 3 chr6 87058553 87058837 -102220717 + AluSx SINE Alu 5 298 -14 5687 139 30 2 chr6 87058839 87059768 -102219786 + L1MC1 LINE L1 5379 6333 0 24 0 0 0 chr6 87060218 87060242 -102219312 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 87061558 87061580 -102217974 + AT_rich Low_complexity Low_complexity 1 22 0 428 264 227 19 chr6 87062913 87063129 -102216425 + MIR SINE MIR 2 262 0 24 53 0 0 chr6 87063164 87063202 -102216352 + AT_rich Low_complexity Low_complexity 1 38 0 281 269 0 0 chr6 87063588 87063655 -102215899 + MER63 DNA MER1_type 44 736 -100 579 12 38 0 chr6 87064152 87064232 -102215322 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 250 269 0 0 chr6 87065967 87066019 -102213535 - L2 LINE L2 -12 3260 3209 26 0 0 0 chr6 87067293 87067319 -102212235 + AT_rich Low_complexity Low_complexity 1 26 0 316 271 0 12 chr6 87067591 87067676 -102211878 + MLT1A1 LTR MaLR 64 147 -218 780 177 0 14 chr6 87067716 87067857 -102211697 + MLT1A1 LTR MaLR 227 365 0 24 53 0 0 chr6 87068090 87068128 -102211426 + AT_rich Low_complexity Low_complexity 1 38 0 255 356 67 36 chr6 87068960 87069154 -102210400 - HERV16 LTR ERVL -1996 3000 2801 586 262 105 107 chr6 87069299 87069814 -102209740 - HERV16 LTR ERVL -3120 2644 2131 1572 95 86 14 chr6 87069821 87070043 -102209511 - AluSc SINE Alu -60 249 12 310 287 11 11 chr6 87070176 87070263 -102209291 + LTR33 LTR ERVL 62 148 -373 440 275 39 23 chr6 87070374 87070583 -102208971 + LTR33 LTR ERVL 289 521 0 2276 135 8 27 chr6 87071165 87071536 -102208018 + THE1B LTR MaLR 1 364 0 908 166 42 177 chr6 87071717 87072275 -102207279 + Charlie1 DNA MER1_type 1 2760 -1 331 303 0 28 chr6 87072641 87072750 -102206804 + L2 LINE L2 3208 3313 0 21 0 0 0 chr6 87072818 87072839 -102206715 + AT_rich Low_complexity Low_complexity 1 21 0 1052 189 72 89 chr6 87073780 87074139 -102205415 + MLT1A1 LTR MaLR 13 365 0 3190 160 33 12 chr6 87074944 87075524 -102204030 + L1PA16 LINE L1 5574 6165 -1 6656 226 78 46 chr6 87076724 87077967 -102201587 + L1M4 LINE L1 2895 4096 -2058 2276 87 0 3 chr6 87077967 87078256 -102201298 + AluY SINE Alu 2 289 -22 6656 226 78 46 chr6 87078256 87079424 -102200130 + L1M4 LINE L1 4096 5387 -767 2158 150 50 77 chr6 87080031 87080216 -102199338 + MSTA LTR MaLR 1 190 -238 4706 50 3 0 chr6 87080216 87080794 -102198760 + L1PA6 LINE L1 5575 6154 0 2158 150 50 77 chr6 87080794 87081048 -102198506 + MSTA LTR MaLR 190 428 0 1617 108 18 0 chr6 87081767 87081989 -102197565 - AluSg/x SINE Alu -2 310 85 1738 149 80 17 chr6 87082746 87083095 -102196459 + THE1C LTR MaLR 1 371 -4 196 325 43 26 chr6 87083332 87083449 -102196105 - L2 LINE L2 -512 2802 2684 190 274 123 57 chr6 87084010 87084116 -102195438 - MIR SINE MIR -38 224 112 21 0 0 0 chr6 87085553 87085574 -102193980 + AT_rich Low_complexity Low_complexity 1 21 0 1530 146 35 17 chr6 87086847 87087135 -102192419 + L1MA8 LINE L1 5863 6155 -136 488 55 41 0 chr6 87087136 87087209 -102192345 + L1MA8 LINE L1 6206 6281 -10 21 36 0 0 chr6 87087212 87087240 -102192314 + AT_rich Low_complexity Low_complexity 1 28 0 257 325 190 20 chr6 87087679 87087879 -102191675 - L2 LINE L2 -527 2787 2554 275 360 173 5 chr6 87088029 87088440 -102191114 - L2 LINE L2 -1009 2305 1826 1549 244 45 66 chr6 87089350 87089918 -102189636 + MLT1F1 LTR MaLR 1 567 0 1479 162 24 0 chr6 87090048 87090301 -102189253 + MER2 DNA MER2_type 2 260 -85 21 0 0 0 chr6 87090301 87090322 -102189232 + AT_rich Low_complexity Low_complexity 1 21 0 1801 142 33 0 chr6 87090323 87090598 -102188956 + AluSx SINE Alu 1 284 -28 1316 292 94 9 chr6 87090612 87091247 -102188307 - L2 LINE L2 -172 3141 2453 391 320 26 19 chr6 87091570 87091726 -102187828 - MIR SINE MIR -49 213 57 1704 178 78 28 chr6 87091794 87091909 -102187645 + L1MA8 LINE L1 5657 5765 -526 333 0 0 0 chr6 87091909 87091946 -102187608 + (CA)n Simple_repeat Simple_repeat 2 38 0 1704 178 78 28 chr6 87091946 87092290 -102187264 + L1MA8 LINE L1 5765 6139 -152 2972 174 19 2 chr6 87092291 87093293 -102186261 - L1P4 LINE L1 -411 6458 5440 266 26 53 0 chr6 87093293 87093331 -102186223 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 2176 90 0 3 chr6 87093336 87093637 -102185917 - L1PA8A LINE L1 -27 6104 5805 * 7878 253 69 9 chr6 87093617 87096192 -102183362 - L1P4 LINE L1 -1374 5475 2735 919 191 170 70 chr6 87097559 87097889 -102181665 - MLT1A1 LTR MaLR 0 365 3 658 237 191 9 chr6 87097991 87098121 -102181433 - MIR SINE MIR -4 258 153 689 238 61 0 chr6 87098121 87098285 -102181269 + MER45A DNA AcHobo 1 174 -4 658 237 191 9 chr6 87098285 87098369 -102181185 - MIR SINE MIR -109 153 5 236 313 43 26 chr6 87098432 87098547 -102181007 - MIR SINE MIR -70 192 76 204 240 0 0 chr6 87098706 87098756 -102180798 + T-rich Low_complexity Low_complexity 5 54 0 2744 135 0 33 chr6 87098869 87099329 -102180225 - L1PA15 LINE L1 -3 6162 5718 597 200 0 0 chr6 87099360 87099465 -102180089 - MST-int LTR MaLR -796 855 751 422 169 96 0 chr6 87099588 87099671 -102179883 + MLT1A1 LTR MaLR 3 93 -272 2057 147 24 27 chr6 87100108 87100483 -102179071 + THE1C LTR MaLR 2 375 0 7617 166 121 3 chr6 87100485 87101957 -102177597 + THE1C-int LTR MaLR 3 1648 -3 1974 149 27 29 chr6 87101968 87102343 -102177211 + THE1C LTR MaLR 2 375 0 902 314 115 17 chr6 87103083 87103560 -102175994 + L2 LINE L2 2175 2698 -616 698 354 82 34 chr6 87103553 87103968 -102175586 + L2 LINE L2 2833 3267 -5 * 1836 125 131 0 chr6 87104438 87104743 -102174811 - L1PA16 LINE L1 -9 6157 5813 387 230 0 46 chr6 87105251 87105338 -102174216 - L2 LINE L2 -1 3312 3230 511 296 121 25 chr6 87106082 87106281 -102173273 - MIR SINE MIR -11 251 34 1867 140 51 29 chr6 87106310 87106625 -102172929 + THE1B LTR MaLR 43 364 0 27 62 0 0 chr6 87106730 87106778 -102172776 + AT_rich Low_complexity Low_complexity 1 48 0 3429 162 26 19 chr6 87108205 87108892 -102170662 - MER67C LTR ERV1 0 710 19 4077 208 18 1 chr6 87108919 87109830 -102169724 + L1 LINE L1 4124 5049 -1097 9170 184 20 40 chr6 87109844 87110645 -102168909 - L1 LINE L1 -824 6741 5926 1202 40 25 10 chr6 87110645 87110844 -102168710 + (TTTC)n Simple_repeat Simple_repeat 1 201 0 9170 184 20 40 chr6 87110844 87112145 -102167409 - L1 LINE L1 -1639 5926 4679 7511 169 88 14 chr6 87112157 87113580 -102165974 - L1 LINE L1 -4926 2639 1111 9351 166 43 14 chr6 87113591 87115271 -102164283 - L1PA15-16 LINE L1 -4331 2518 790 393 267 14 27 chr6 87115353 87115423 -102164131 - HAL1b LINE L1 -510 838 769 2116 130 0 3 chr6 87115423 87115730 -102163824 - AluSx SINE Alu -6 306 1 393 267 14 27 chr6 87115730 87115805 -102163749 - HAL1b LINE L1 -579 769 695 21 71 0 0 chr6 87115807 87115849 -102163705 + AT_rich Low_complexity Low_complexity 1 42 0 5003 166 29 46 chr6 87115855 87117813 -102161741 - L1MA4 LINE L1 -6 7713 5793 10511 90 25 1 chr6 87117925 87119758 -102159796 - L1P3 LINE L1 -427 5727 3853 6427 121 8 13 chr6 87119757 87120967 -102158587 - L1P3 LINE L1 -4401 2060 844 * 3222 190 26 32 chr6 87120988 87121802 -102157752 - L1MA4 LINE L1 -3114 4451 3643 531 221 0 0 chr6 87121806 87121910 -102157644 - L1 LINE L1 -1268 4878 4775 7759 209 37 53 chr6 87121920 87124449 -102155105 - L1MA4 LINE L1 -3946 3619 13 192 361 60 0 chr6 87124525 87124608 -102154946 - MIR SINE MIR -56 206 119 4331 151 11 38 chr6 87124978 87125794 -102153760 - L1MB3 LINE L1 -22 6161 5368 181 330 53 11 chr6 87126494 87126588 -102152966 + MIR SINE MIR 161 258 -4 198 221 58 70 chr6 87128252 87128338 -102151216 + L2 LINE L2 3227 3311 -2 2107 151 75 7 chr6 87129069 87129482 -102150072 + L1MA7 LINE L1 5842 6284 -7 344 99 158 0 chr6 87129537 87129638 -102149916 - Charlie5 DNA MER1_type -129 2483 2367 27 87 0 0 chr6 87129694 87129763 -102149791 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr6 87130094 87130115 -102149439 + AT_rich Low_complexity Low_complexity 1 21 0 232 143 24 0 chr6 87130188 87130230 -102149324 - L1M4 LINE L1 -2376 3770 3728 5034 84 1 1 chr6 87130384 87131063 -102148491 - L1PA7 LINE L1 0 6154 5476 5002 51 5 0 chr6 87131063 87131683 -102147871 - L1PA4 LINE L1 -1 6154 5527 21 36 0 0 chr6 87181729 87181757 -102097797 + AT_rich Low_complexity Low_complexity 1 28 0 405 332 70 32 chr6 87182378 87182565 -102096989 - MIR SINE MIR -4 258 65 2065 129 13 0 chr6 87182761 87183063 -102096491 + AluSq SINE Alu 1 306 -7 1450 204 61 29 chr6 87183669 87184012 -102095542 - MLT1A1 LTR MaLR -11 354 1 2090 126 0 3 chr6 87184032 87184326 -102095228 - AluSg SINE Alu -17 293 1 837 257 135 6 chr6 87184656 87184983 -102094571 - Charlie7 DNA MER1_type -221 2391 2023 310 314 16 0 chr6 87184998 87185119 -102094435 + L1ME4a LINE L1 5539 5661 -460 197 158 66 26 chr6 87185144 87185220 -102094334 + CT-rich Low_complexity Low_complexity 5 83 0 1433 193 15 4 chr6 87185225 87185489 -102094065 - AluJb SINE Alu -45 267 1 193 231 141 51 chr6 87185619 87185697 -102093857 - MIR SINE MIR -13 249 165 228 273 81 0 chr6 87185865 87185964 -102093590 + L1ME4a LINE L1 5933 6039 -82 351 295 115 32 chr6 87186045 87186357 -102093197 + L1ME4a LINE L1 5692 6029 -92 261 0 0 0 chr6 87188262 87188291 -102091263 + (TG)n Simple_repeat Simple_repeat 2 30 0 531 303 61 79 chr6 87188877 87189154 -102090400 + LTR67 LTR ERVL 97 368 -189 479 366 90 20 chr6 87189193 87189548 -102090006 + HERVL LTR ERVL 3130 3509 -2145 290 241 11 23 chr6 87189837 87189924 -102089630 + HERVL LTR ERVL 3960 4045 -1719 1808 269 84 28 chr6 87189943 87190732 -102088822 + L1ME3A LINE L1 5333 6165 -5 2680 203 20 6 chr6 87190862 87191404 -102088150 - MER44D DNA MER2_type 0 605 1 412 285 146 0 chr6 87192795 87192918 -102086636 - L2 LINE L2 -4 3309 3169 1222 276 123 39 chr6 87193206 87194069 -102085485 + L1M4 LINE L1 2592 3526 -2620 232 258 67 45 chr6 87194287 87194376 -102085178 - MIR SINE MIR -74 188 98 349 312 52 29 chr6 87194567 87194740 -102084814 + MIR SINE MIR 63 239 -23 1347 141 21 6 chr6 87195419 87195784 -102083770 + LTR19A LTR ERV1 1 486 0 248 208 0 13 chr6 87197133 87197210 -102082344 + (TA)n Simple_repeat Simple_repeat 2 77 0 2285 151 26 0 chr6 87197463 87197847 -102081707 - MER57A LTR ERV1 -9 394 1 1214 296 100 46 chr6 87197916 87199104 -102080450 + L1ME4a LINE L1 409 1692 -4704 37 39 0 0 chr6 87199481 87199532 -102080022 + AT_rich Low_complexity Low_complexity 1 51 0 554 187 26 9 chr6 87199555 87199689 -102079865 - L1MC4 LINE L1 -207 7788 7561 42 36 0 0 chr6 87199689 87199745 -102079809 + AT_rich Low_complexity Low_complexity 1 56 0 13912 159 52 22 chr6 87199749 87204454 -102075100 - L1PB1 LINE L1 -7 6860 1928 2311 98 0 3 chr6 87204454 87204759 -102074795 - AluY SINE Alu -7 304 1 13912 159 52 22 chr6 87204759 87206093 -102073461 - L1PB1 LINE L1 -4939 1928 636 1139 173 0 0 chr6 87206096 87206293 -102073261 - L1PB1 LINE L1 -6666 197 1 617 312 59 17 chr6 87206306 87206841 -102072713 + L1ME4a LINE L1 2151 2666 -3549 5560 174 34 16 chr6 87207033 87209044 -102070510 + L1MA9 LINE L1 4239 6287 -25 2136 151 17 0 chr6 87209106 87209458 -102070096 + MER46B DNA MER2_type 1 233 -3 1453 164 38 0 chr6 87209555 87209847 -102069707 + L1MA8 LINE L1 5987 6289 -2 231 292 188 19 chr6 87210525 87210833 -102068721 + L1ME4a LINE L1 2910 3269 -2946 1145 309 75 33 chr6 87210851 87211869 -102067685 + L1ME4a LINE L1 3289 4263 -1952 2091 103 75 32 chr6 87211869 87212217 -102067337 + THE1B LTR MaLR 1 363 -1 3582 121 86 14 chr6 87212223 87212851 -102066703 - L1MA8 LINE L1 -13 6278 5606 1145 309 75 33 chr6 87212851 87213175 -102066379 + L1ME4a LINE L1 4267 4709 -1506 456 148 39 8 chr6 87213175 87213303 -102066251 + (TA)n Simple_repeat Simple_repeat 2 133 0 339 323 82 28 chr6 87213402 87213684 -102065870 + L1ME4a LINE L1 4716 5012 -1203 491 275 132 31 chr6 87213692 87214148 -102065406 + L1ME4a LINE L1 5075 5589 -646 379 299 81 15 chr6 87214264 87214461 -102065093 + L1ME3A LINE L1 5752 5961 -209 23 0 0 0 chr6 87214693 87214716 -102064838 + AT_rich Low_complexity Low_complexity 1 23 0 2277 135 32 0 chr6 87215339 87215687 -102063867 + THE1B LTR MaLR 1 359 -5 224 350 21 21 chr6 87215793 87215890 -102063664 + MIR SINE MIR 39 135 -73 * 533 304 79 14 chr6 87215871 87216085 -102063469 - MIR SINE MIR -6 256 29 197 285 113 66 chr6 87216926 87217077 -102062477 + MIR SINE MIR 56 213 -49 224 59 29 0 chr6 87217109 87217143 -102062411 + (TTA)n Simple_repeat Simple_repeat 2 36 0 260 343 40 0 chr6 87218354 87218453 -102061101 + MIR3 SINE MIR 103 205 -3 192 371 0 16 chr6 87218667 87218729 -102060825 + MIR SINE MIR 20 80 -182 564 292 34 11 chr6 87218743 87218921 -102060633 + MER5A DNA MER1_type 8 189 0 202 320 98 33 chr6 87219329 87219451 -102060103 + MIR3 SINE MIR 12 141 -67 223 271 0 17 chr6 87219548 87219607 -102059947 - L2 LINE L2 0 3313 3256 615 214 86 41 chr6 87219798 87220018 -102059536 + L1ME4a LINE L1 5612 5841 -349 313 273 30 48 chr6 87220144 87220309 -102059245 + L1ME4a LINE L1 6023 6184 -6 291 331 124 6 chr6 87220947 87221116 -102058438 + MIR SINE MIR 2 190 -72 222 37 0 0 chr6 87221538 87221565 -102057989 + (CA)n Simple_repeat Simple_repeat 2 28 0 180 125 0 0 chr6 87221718 87221750 -102057804 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 532 246 48 0 chr6 87225360 87225486 -102054068 - MER5B DNA MER1_type -45 133 2 522 305 25 13 chr6 87225494 87225733 -102053821 - L1MA9 LINE L1 -9 6303 6062 2073 128 0 0 chr6 87225753 87226043 -102053511 + AluSx SINE Alu 11 300 -12 264 267 22 117 chr6 87226350 87226530 -102053024 + MIR SINE MIR 56 218 -44 200 211 0 0 chr6 87227595 87227633 -102051921 + MIR SINE MIR 115 152 -56 2239 84 3 26 chr6 87228506 87228816 -102050738 + AluSp SINE Alu 1 303 -10 297 327 242 5 chr6 87229145 87229356 -102050198 - MIR SINE MIR 0 262 2 22 88 0 0 chr6 87229446 87229503 -102050051 + AT_rich Low_complexity Low_complexity 1 57 0 201 74 0 0 chr6 87229638 87229665 -102049889 + (T)n Simple_repeat Simple_repeat 1 27 0 229 132 29 29 chr6 87230191 87230259 -102049295 + T-rich Low_complexity Low_complexity 6 73 0 3663 96 30 9 chr6 87230270 87230835 -102048719 - L1MA1 LINE L1 0 7721 7145 13138 175 35 17 chr6 87230935 87231074 -102048480 - L1MA1 LINE L1 -762 6803 6668 3431 89 6 0 chr6 87231074 87231546 -102048008 - L1PA13 LINE L1 0 6163 5689 13138 175 35 17 chr6 87231546 87233946 -102045608 - L1MA1 LINE L1 -897 6668 4375 2253 112 60 11 chr6 87233946 87234293 -102045261 + THE1B LTR MaLR 1 364 0 13138 175 35 17 chr6 87234293 87234668 -102044886 - L1MA1 LINE L1 -3190 4375 4008 8028 133 11 1 chr6 87234668 87236734 -102042820 - L1PA8A LINE L1 0 6446 4383 43109 49 3 4 chr6 87236746 87242906 -102036648 - L1PA4 LINE L1 -3 6152 2 16434 159 23 23 chr6 87242914 87247132 -102032422 - L1PA8A LINE L1 -2092 4369 90 * 20065 162 49 7 chr6 87247131 87250963 -102028591 - L1MA1 LINE L1 -3562 4003 10 386 250 140 80 chr6 87251943 87252143 -102027411 + MLT1J LTR MaLR 100 311 -200 1649 197 87 56 chr6 87252200 87252697 -102026857 + MER67D LTR ERV1 3 514 0 589 313 25 47 chr6 87252727 87253151 -102026403 + L1MC5 LINE L1 7028 7394 -414 310 252 58 52 chr6 87253244 87253399 -102026155 + MLT1J LTR MaLR 325 480 -31 486 343 39 11 chr6 87253686 87253867 -102025687 - MIR3 SINE MIR -13 195 10 723 150 0 0 chr6 87254003 87254123 -102025431 + AluSg/x SINE Alu 192 311 -1 3802 153 26 30 chr6 87254306 87255079 -102024475 - L1MA8 LINE L1 0 6291 5522 24 53 0 0 chr6 87255227 87255265 -102024289 + AT_rich Low_complexity Low_complexity 1 38 0 1788 118 7 18 chr6 87255267 87255539 -102024015 + AluSc SINE Alu 41 309 0 31 0 0 0 chr6 87255750 87255781 -102023773 + AT_rich Low_complexity Low_complexity 1 31 0 323 303 62 51 chr6 87255874 87256052 -102023502 + MIR SINE MIR 83 262 0 4603 169 27 10 chr6 87257316 87258256 -102021298 - L1MA8 LINE L1 -992 5154 4199 4527 134 22 30 chr6 87258256 87259090 -102020464 + L1MA4A LINE L1 5295 6121 -182 381 198 0 0 chr6 87259259 87259345 -102020209 + GA-rich Low_complexity Low_complexity 1 86 0 240 200 0 0 chr6 87260938 87260988 -102018566 + (CA)n Simple_repeat Simple_repeat 1 50 0 23 86 0 0 chr6 87261116 87261174 -102018380 + AT_rich Low_complexity Low_complexity 1 58 0 631 188 0 0 chr6 87261376 87261477 -102018077 - FLAM_A SINE Alu -41 101 1 770 245 31 87 chr6 87261594 87261916 -102017638 - L2 LINE L2 0 3313 3010 192 205 13 26 chr6 87262592 87262670 -102016884 + (TCCA)n Simple_repeat Simple_repeat 4 80 0 354 275 80 29 chr6 87263638 87263776 -102015778 + L2 LINE L2 3169 3313 0 290 328 60 26 chr6 87263962 87264078 -102015476 + L2 LINE L2 3194 3313 0 673 25 0 0 chr6 87264508 87264587 -102014967 - L1PA2 LINE L1 -257 5898 5820 2237 23 0 0 chr6 87264587 87264848 -102014706 + L1PA2 LINE L1 5894 6154 -1 21 0 0 0 chr6 87264854 87264875 -102014679 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr6 87265435 87265478 -102014076 + AT_rich Low_complexity Low_complexity 1 43 0 6108 176 41 22 chr6 87266652 87268757 -102010797 - L1MA9 LINE L1 -1 6311 4097 3368 41 24 0 chr6 87268758 87269170 -102010384 - MER11C LTR ERVK -649 422 1 977 192 72 0 chr6 87269170 87269378 -102010176 - L1MA8 LINE L1 -1973 4173 3951 14093 180 37 29 chr6 87269390 87272603 -102006951 - L1MA6 LINE L1 -1 6299 3051 2066 134 0 6 chr6 87272603 87272917 -102006637 - AluSx SINE Alu 0 312 1 14093 180 37 29 chr6 87272917 87273724 -102005830 - L1MA6 LINE L1 -3249 3051 2252 399 148 0 25 chr6 87273707 87273788 -102005766 - L1MA8 LINE L1 -2181 3965 3887 * 207 297 29 58 chr6 87273858 87273996 -102005558 - MIR SINE MIR -55 153 20 22 35 0 0 chr6 87274095 87274124 -102005430 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 87274229 87274250 -102005304 + AT_rich Low_complexity Low_complexity 1 21 0 571 267 42 46 chr6 87274363 87274625 -102004929 - MIR SINE MIR 0 262 2 21 0 0 0 chr6 87275017 87275038 -102004516 + AT_rich Low_complexity Low_complexity 1 21 0 1845 215 97 77 chr6 87276354 87276981 -102002573 + L1ME3A LINE L1 5505 6144 -26 442 152 0 0 chr6 87277208 87277274 -102002280 - AluJ/FRAM SINE Alu -17 295 230 1423 209 18 14 chr6 87277277 87277560 -102001994 - AluJb SINE Alu -28 284 1 464 297 196 46 chr6 87278010 87278444 -102001110 + L2 LINE L2 2808 3306 -7 43 0 0 0 chr6 87278920 87278963 -102000591 + AT_rich Low_complexity Low_complexity 1 43 0 1572 142 56 17 chr6 87279667 87279955 -101999599 + AluJo SINE Alu 1 299 -13 219 309 36 0 chr6 87279998 87280082 -101999472 - MIR SINE MIR -86 176 90 1999 213 87 69 chr6 87280090 87280711 -101998843 + MLT1E1 LTR MaLR 13 644 -10 212 256 8 152 chr6 87280954 87281079 -101998475 - MER5B DNA MER1_type -67 111 5 2061 159 28 6 chr6 87281597 87281950 -101997604 - MLT1A1 LTR MaLR -4 361 1 240 204 61 0 chr6 87282851 87282900 -101996654 + L2 LINE L2 3217 3268 -4 3672 96 45 0 chr6 87283242 87283772 -101995782 - MER41A LTR ERV1 0 554 1 22 0 0 0 chr6 87283945 87283967 -101995587 + AT_rich Low_complexity Low_complexity 1 22 0 198 336 96 19 chr6 87284230 87284334 -101995220 - MIR3 SINE MIR -15 193 82 1357 114 50 5 chr6 87284334 87284449 -101995105 + MER30 DNA MER1_type 1 109 -121 216 0 0 0 chr6 87284449 87284473 -101995081 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1357 114 50 5 chr6 87284473 87284577 -101994977 + MER30 DNA MER1_type 109 230 0 1412 205 36 113 chr6 87284768 87285325 -101994229 - MER67D LTR ERV1 0 514 1 623 309 27 34 chr6 87285475 87285773 -101993781 + L1ME4a LINE L1 5522 5817 -304 378 237 89 0 chr6 87287085 87287220 -101992334 + L1ME4a LINE L1 5969 6115 -6 220 355 54 21 chr6 87288301 87288394 -101991160 - L2 LINE L2 -19 3253 3158 405 284 63 91 chr6 87288900 87289100 -101990454 + MIR SINE MIR 13 206 -56 2221 55 51 10 chr6 87289100 87289392 -101990162 + AluY SINE Alu 1 304 -7 405 284 63 91 chr6 87289392 87289445 -101990109 + MIR SINE MIR 206 259 -3 268 300 69 8 chr6 87290223 87290353 -101989201 - L1M LINE L1 -719 5402 5265 241 203 17 17 chr6 87290874 87290933 -101988621 - L1P LINE L1 -1905 4241 4183 1799 169 0 29 chr6 87291659 87291966 -101987588 - AluJb SINE Alu -14 298 1 215 239 0 30 chr6 87292283 87292350 -101987204 + CT-rich Low_complexity Low_complexity 2 66 0 598 153 29 58 chr6 87293597 87293734 -101985820 + MER77 LTR ERV1 469 601 -4 23 0 0 0 chr6 87293790 87293813 -101985741 + AT_rich Low_complexity Low_complexity 1 23 0 385 461 37 15 chr6 87293887 87294439 -101985115 - L2 LINE L2 0 3313 2746 2351 112 0 0 chr6 87295433 87295745 -101983809 - AluSx SINE Alu 0 312 1 193 323 0 0 chr6 87295761 87295823 -101983731 - MIR SINE MIR -71 191 130 323 320 47 41 chr6 87295830 87296002 -101983552 - L2 LINE L2 -554 2760 2588 574 318 83 56 chr6 87297191 87297672 -101981882 - LTR33 LTR ERVL -5 516 23 6729 133 80 2 chr6 87298161 87298451 -101981103 - Tigger3b DNA MER2_type -1798 1230 964 5373 50 1 0 chr6 87298451 87299109 -101980445 + L1PA5 LINE L1 5496 6154 0 6729 133 80 2 chr6 87299109 87299958 -101979596 - Tigger3b DNA MER2_type -2064 964 2 428 315 197 23 chr6 87300342 87300733 -101978821 - LTR67 LTR ERVL -2 555 97 315 316 17 2 chr6 87301883 87302112 -101977442 + MLT1L LTR MaLR 1 269 -346 295 279 0 0 chr6 87303648 87303765 -101975789 - L1MC4 LINE L1 0 8042 7901 244 220 0 0 chr6 87303850 87303900 -101975654 + (ATG)n Simple_repeat Simple_repeat 2 51 0 486 255 62 0 chr6 87303905 87304050 -101975504 - MIR SINE MIR -10 252 99 366 235 49 34 chr6 87304134 87304267 -101975287 - LTR40a LTR ERVL -94 425 229 21 36 0 0 chr6 87304540 87304568 -101974986 + AT_rich Low_complexity Low_complexity 1 28 0 8366 180 32 9 chr6 87304749 87307364 -101972190 - L1MA7 LINE L1 0 7710 5047 1578 115 5 0 chr6 87307364 87307602 -101971952 + AluSp SINE Alu 75 313 0 8366 180 32 9 chr6 87307602 87307634 -101971920 - L1MA7 LINE L1 -2663 5047 5017 1425 220 78 72 chr6 87307635 87308485 -101971069 - L1MA7 LINE L1 -3805 3760 2905 1957 195 31 35 chr6 87308502 87308953 -101970601 + L1MD1 LINE L1 5694 6142 -100 625 277 84 4 chr6 87308953 87309191 -101970363 - L1M4c LINE L1 -4728 1656 1400 507 157 45 0 chr6 87309192 87309273 -101970281 - U6 snRNA snRNA 0 107 23 407 194 28 0 chr6 87309273 87309345 -101970209 - Tigger5 DNA MER2_type 0 2323 2250 348 330 0 0 chr6 87309394 87309485 -101970069 - Tigger5 DNA MER2_type -2232 91 1 282 275 35 42 chr6 87309542 87309684 -101969870 - L1ME LINE L1 -419 5702 5562 25 0 0 0 chr6 87310119 87310144 -101969410 + AT_rich Low_complexity Low_complexity 1 25 0 2172 78 0 0 chr6 87311162 87311445 -101968109 - AluY SINE Alu -1 310 28 252 221 44 15 chr6 87312329 87312397 -101967157 - MLT1K LTR MaLR -8 580 511 2436 60 0 0 chr6 87312884 87313167 -101966387 + AluY SINE Alu 1 283 -28 741 283 130 18 chr6 87313385 87313884 -101965670 - HAL1b LINE L1 -672 676 122 2662 180 20 75 chr6 87314097 87314681 -101964873 - MER52A LTR ERV1 0 1755 1204 413 168 8 48 chr6 87314679 87314804 -101964750 - LTR28 LTR ERV1 -331 689 570 * 3017 212 189 74 chr6 87314774 87315946 -101963608 - MER52A LTR ERV1 -448 1307 1 339 25 0 0 chr6 87316294 87316334 -101963220 + (TG)n Simple_repeat Simple_repeat 1 40 0 1170 280 101 90 chr6 87316429 87318144 -101961410 - HAL1 LINE L1 -755 1752 20 1484 128 104 40 chr6 87320944 87321271 -101958283 - L1MA8 LINE L1 -3 6288 5941 382 158 24 24 chr6 87321274 87321356 -101958198 + MIR SINE MIR 180 261 -1 451 301 75 14 chr6 87321464 87321677 -101957877 + MIR SINE MIR 28 253 -9 599 222 52 16 chr6 87322459 87322653 -101956901 - MER69B DNA AcHobo 0 1226 1026 1729 253 57 29 chr6 87323196 87323321 -101956233 - MER69B DNA AcHobo -1508 1018 898 8165 66 14 5 chr6 87323321 87324382 -101955172 - MER11C LTR ERVK 0 1071 1 1729 253 57 29 chr6 87324382 87325191 -101954363 - MER69B DNA AcHobo -1628 898 3 265 275 181 6 chr6 87326131 87326302 -101953252 - HAL1 LINE L1 -139 2368 2168 259 235 49 49 chr6 87326400 87326502 -101953052 - HAL1b LINE L1 -474 874 773 456 248 17 8 chr6 87327216 87327333 -101952221 + FLAM_C SINE Alu 3 120 -13 217 329 155 12 chr6 87327356 87327517 -101952037 + L2 LINE L2 2349 2532 -782 239 370 74 19 chr6 87327722 87327938 -101951616 + L2 LINE L2 2824 3051 -221 202 264 160 56 chr6 87328024 87328149 -101951405 + L2 LINE L2 3175 3312 -1 2163 196 30 6 chr6 87328379 87328905 -101950649 + LTR27 LTR ERV1 3 1242 -11 3034 121 7 0 chr6 87331839 87332270 -101947284 - MER57B LTR ERV1 0 434 1 2160 108 3 0 chr6 87333695 87333983 -101945571 - AluSq SINE Alu -24 289 1 227 252 90 18 chr6 87334469 87334580 -101944974 + L1ME4a LINE L1 6001 6119 -2 22 0 0 0 chr6 87336411 87336433 -101943121 + AT_rich Low_complexity Low_complexity 1 22 0 214 274 0 24 chr6 87336898 87336982 -101942572 + T-rich Low_complexity Low_complexity 3 84 0 2260 93 14 0 chr6 87337221 87337512 -101942042 - AluSc SINE Alu -12 297 3 10845 225 65 53 chr6 87338175 87341747 -101937807 + L1PA8A LINE L1 1 3529 -3304 2789 19 0 0 chr6 87341747 87342057 -101937497 + AluY SINE Alu 1 310 -1 10845 225 65 53 chr6 87342057 87343251 -101936303 + L1PA8A LINE L1 3529 4707 -2126 2535 107 16 139 chr6 87343251 87343804 -101935750 - LTR22B LTR ERVK -3 489 5 10845 225 65 53 chr6 87343804 87344533 -101935021 + L1PA8A LINE L1 4707 5426 -1407 310 106 22 50 chr6 87344533 87344605 -101934949 - MADE1 DNA Mariner -37 43 1 10845 225 65 53 chr6 87344605 87345599 -101933955 + L1PA8A LINE L1 5426 6593 -240 5305 134 21 11 chr6 87345599 87346772 -101932782 + L1PA14 LINE L1 4976 6157 -4 1138 211 15 4 chr6 87346777 87347037 -101932517 + L1PB4 LINE L1 5891 6153 -3 416 254 60 9 chr6 87347416 87347576 -101931978 - LTR45B LTR ERV1 -14 517 306 565 111 0 22 chr6 87347579 87347669 -101931885 - MER11A LTR ERVK 0 1266 1179 14887 36 7 1 chr6 87347669 87349541 -101930013 - L1P2 LINE L1 -699 5456 3580 546 118 0 12 chr6 87349541 87349626 -101929928 - MER11B LTR ERVK -655 581 498 217 316 0 0 chr6 87449718 87449775 -101829779 + MIR SINE MIR 206 262 0 2881 6 0 6 chr6 87451507 87451826 -101827728 + AluYb8 SINE Alu 2 318 0 2211 131 20 0 chr6 87452396 87452746 -101826808 - L1PA15 LINE L1 -13 6152 5796 223 91 23 23 chr6 87452761 87452805 -101826749 + (TTCCC)n Simple_repeat Simple_repeat 5 48 0 758 168 7 7 chr6 87453563 87453700 -101825854 + MER2 DNA MER2_type 1 137 -208 1785 169 6 22 chr6 87453773 87454086 -101825468 - AluJb SINE Alu -4 308 1 260 304 0 0 chr6 87454087 87454156 -101825398 + MER2 DNA MER2_type 277 345 0 451 265 12 31 chr6 87454736 87454898 -101824656 + MLT1L LTR MaLR 132 290 -325 423 272 118 12 chr6 87454972 87455141 -101824413 + MLT1L LTR MaLR 427 613 -2 581 318 104 21 chr6 87456238 87456622 -101822932 + LTR33 LTR ERVL 32 447 -74 186 290 129 11 chr6 87456685 87456778 -101822776 - MIR SINE MIR -85 123 20 431 322 62 16 chr6 87457042 87457284 -101822270 - L2 LINE L2 -810 2504 2252 1536 177 66 17 chr6 87457578 87457940 -101821614 + MLT1B LTR MaLR 1 380 -10 282 279 63 0 chr6 87458167 87458278 -101821276 - MLT1J LTR MaLR -267 244 127 33 0 0 0 chr6 87458665 87458698 -101820856 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr6 87458733 87458759 -101820795 + AT_rich Low_complexity Low_complexity 1 26 0 183 42 0 0 chr6 87458789 87458813 -101820741 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 213 94 0 0 chr6 87460704 87460736 -101818818 + (CA)n Simple_repeat Simple_repeat 2 33 0 353 305 96 20 chr6 87460740 87461127 -101818427 + MLT2F LTR ERVL 6 486 -177 361 347 21 21 chr6 87461153 87461346 -101818208 + MLT2F LTR ERVL 469 661 -2 29265 81 5 6 chr6 87461783 87465861 -101813693 + L1P LINE L1 3 4076 -2070 2173 62 48 10 chr6 87465861 87466150 -101813404 + AluYa5 SINE Alu 1 300 -11 29265 81 5 6 chr6 87466150 87466273 -101813281 + L1P LINE L1 4076 4198 -1948 900 311 136 25 chr6 87466373 87466797 -101812757 + L2 LINE L2 2646 3157 -156 198 71 0 0 chr6 87466797 87466825 -101812729 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 900 311 136 25 chr6 87466825 87467001 -101812553 + L2 LINE L2 3157 3312 -1 1906 182 46 0 chr6 87467055 87467402 -101812152 - MLT1A1 LTR MaLR -2 363 1 264 274 95 48 chr6 87467701 87467785 -101811769 + MIR SINE MIR 33 120 -88 23 33 0 0 chr6 87467832 87467862 -101811692 + AT_rich Low_complexity Low_complexity 1 30 0 330 299 51 13 chr6 87470460 87470694 -101808860 + L1ME LINE L1 5500 5742 -379 2161 110 3 3 chr6 87470935 87471236 -101808318 - AluSx SINE Alu -9 303 3 7125 59 0 2 chr6 87471566 87472914 -101806640 + L1PA5 LINE L1 4796 6154 0 2312 89 0 0 chr6 87472961 87473264 -101806290 - AluY SINE Alu -8 303 1 396 0 0 0 chr6 87473398 87473442 -101806112 + (TG)n Simple_repeat Simple_repeat 2 45 0 292 368 0 9 chr6 87473470 87473576 -101805978 - MIR SINE MIR -156 106 2 1351 321 151 33 chr6 87477580 87478886 -101800668 + L2 LINE L2 1858 3313 0 23 0 0 0 chr6 87479077 87479100 -101800454 + AT_rich Low_complexity Low_complexity 1 23 0 706 260 63 72 chr6 87479106 87479425 -101800129 - L2 LINE L2 0 3313 2998 401 241 168 14 chr6 87479577 87479797 -101799757 - L2 LINE L2 -419 2895 2642 5351 146 63 3 chr6 87479809 87480712 -101798842 - L1M1 LINE L1 -5504 2061 1105 502 179 45 0 chr6 87480708 87480820 -101798734 - L1M1 LINE L1 -7430 135 19 * 2976 209 41 4 chr6 87481099 87481784 -101797770 - MER67C LTR ERV1 0 710 1 262 221 78 39 chr6 87483063 87483140 -101796414 + Charlie8 DNA MER1_type 4 83 -2334 1386 130 57 0 chr6 87483579 87483825 -101795729 + MER2 DNA MER2_type 1 260 -85 636 204 0 15 chr6 87484021 87484153 -101795401 - FLAM_A SINE Alu 0 133 4 623 142 8 33 chr6 87484665 87484785 -101794769 + L1PA16 LINE L1 6042 6158 -8 189 0 0 0 chr6 87485377 87485398 -101794156 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2686 54 0 17 chr6 87485399 87485748 -101793806 - L1PA5 LINE L1 -18 6136 5794 413 291 8 8 chr6 87485905 87486022 -101793532 - LTR28 LTR ERV1 -4 1016 900 836 193 155 124 chr6 87486100 87486491 -101793063 - LTR1B LTR ERV1 -81 745 342 2784 63 0 0 chr6 87486716 87487065 -101792489 - L1PA6 LINE L1 -81 6073 5725 198 231 0 0 chr6 87487065 87487130 -101792424 + CT-rich Low_complexity Low_complexity 3 67 0 213 178 0 0 chr6 87487153 87487198 -101792356 + CT-rich Low_complexity Low_complexity 1 45 0 489 223 0 29 chr6 87487214 87487317 -101792237 - MER58 DNA MER1_type -115 100 1 994 293 39 3 chr6 87487318 87487625 -101791929 + HERVL LTR ERVL 2872 3189 -2465 772 284 19 9 chr6 87487714 87487925 -101791629 + HERVL LTR ERVL 3689 3901 -1863 2145 200 15 5 chr6 87488245 87488650 -101790904 + MSTB LTR MaLR 3 411 -15 822 283 82 55 chr6 87488858 87489420 -101790134 - MER77 LTR ERV1 -7 598 22 335 291 148 36 chr6 87489520 87489743 -101789811 + MIR SINE MIR 5 252 -10 885 300 36 72 chr6 87489949 87490310 -101789244 - LTR16A LTR ERVL -5 445 73 816 256 6 0 chr6 87490310 87490486 -101789068 + MER45A DNA AcHobo 1 177 -1 885 300 36 72 chr6 87490486 87490525 -101789029 - LTR16A LTR ERVL -377 73 60 2589 145 65 13 chr6 87490525 87490986 -101788568 - MER31A LTR ERV1 0 485 1 885 300 36 72 chr6 87490986 87491030 -101788524 - LTR16A LTR ERVL -390 60 16 1441 199 24 40 chr6 87491141 87491438 -101788116 + AluJo SINE Alu 1 292 -10 297 0 0 0 chr6 87491849 87491882 -101787672 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1639 182 3 23 chr6 87492298 87492600 -101786954 - AluJb SINE Alu -15 297 2 187 256 0 0 chr6 87492752 87492791 -101786763 + L2 LINE L2 3016 3054 -218 667 269 97 48 chr6 87492923 87493150 -101786404 + MIR SINE MIR 2 239 -23 376 336 41 7 chr6 87493198 87493344 -101786210 - MIR SINE MIR -48 214 64 181 333 0 0 chr6 87493362 87493416 -101786138 + L2 LINE L2 2704 2757 -557 342 300 0 17 chr6 87493939 87494059 -101785495 - MER94 DNA DNA -5 129 12 202 175 0 123 chr6 87494456 87494513 -101785041 + L2 LINE L2 3264 3313 0 340 290 89 101 chr6 87494683 87495097 -101784457 + MLT1I LTR MaLR 1 409 0 188 420 14 21 chr6 87495263 87495406 -101784148 - MIR3 SINE MIR -23 185 44 206 31 0 31 chr6 87496126 87496158 -101783396 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 22 0 0 0 chr6 87496347 87496369 -101783185 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 87497396 87497424 -101782130 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr6 87498487 87498515 -101781039 + AT_rich Low_complexity Low_complexity 1 28 0 479 303 95 66 chr6 87498527 87498768 -101780786 - L2 LINE L2 -2916 398 151 418 220 183 11 chr6 87498979 87499170 -101780384 - L1ME4a LINE L1 -167 5954 5731 781 217 18 75 chr6 87499978 87500204 -101779350 + MER20 DNA MER1_type 4 216 -3 1916 122 42 75 chr6 87501289 87501673 -101777881 + THE1C LTR MaLR 1 371 -4 1891 156 3 0 chr6 87501913 87502195 -101777359 + AluSx SINE Alu 3 285 -27 26 30 0 0 chr6 87502335 87502368 -101777186 + AT_rich Low_complexity Low_complexity 1 33 0 3324 174 59 13 chr6 87502469 87503148 -101776406 + MER67C LTR ERV1 1 710 0 22 0 0 0 chr6 87503343 87503365 -101776189 + AT_rich Low_complexity Low_complexity 1 22 0 3772 137 29 29 chr6 87503431 87504081 -101775473 + MER39B LTR ERV1 4 653 0 3826 193 30 13 chr6 87504108 87504436 -101775118 - L1MB4 LINE L1 -69 6111 5790 2004 132 7 0 chr6 87504436 87504725 -101774829 - AluSg SINE Alu -19 291 1 3826 193 30 13 chr6 87504725 87505266 -101774288 - L1MB4 LINE L1 -390 5790 5228 302 0 26 0 chr6 87505580 87505618 -101773936 + (CA)n Simple_repeat Simple_repeat 2 40 0 491 178 85 0 chr6 87505702 87505831 -101773723 - L1MC4a LINE L1 -1978 5830 5691 400 326 7 0 chr6 87505843 87505984 -101773570 - L1MC4a LINE L1 -2193 5615 5474 381 261 161 37 chr6 87506062 87506280 -101773274 - MIR SINE MIR 0 262 18 1083 257 59 71 chr6 87506378 87506887 -101772667 - MLT1D LTR MaLR 0 505 3 675 295 14 41 chr6 87506942 87507237 -101772317 - L2 LINE L2 0 3313 3027 1393 230 122 28 chr6 87507237 87507698 -101771856 + MLT1D LTR MaLR 1 504 -1 587 273 71 85 chr6 87507698 87508118 -101771436 - L2 LINE L2 -281 3032 2618 274 243 40 14 chr6 87508121 87508195 -101771359 - L2 LINE L2 -1009 2305 2230 290 376 21 21 chr6 87509678 87509819 -101769735 - MIR3 SINE MIR -64 144 4 197 180 20 0 chr6 87510576 87510626 -101768928 + GA-rich Low_complexity Low_complexity 2 52 0 203 190 17 0 chr6 87510666 87510724 -101768830 + (TA)n Simple_repeat Simple_repeat 1 59 0 1004 316 55 121 chr6 87510873 87511228 -101768326 + MLT1E1 LTR MaLR 1 289 -365 2284 91 0 29 chr6 87511228 87511536 -101768018 + AluSp SINE Alu 2 300 -13 1004 316 55 121 chr6 87511536 87511877 -101767677 + MLT1E1 LTR MaLR 289 651 -3 236 344 39 52 chr6 87512342 87512416 -101767138 - L2 LINE L2 -13 3259 3186 1584 88 4 22 chr6 87512416 87512643 -101766911 - AluSq SINE Alu 0 313 91 236 344 39 52 chr6 87512643 87512722 -101766832 - L2 LINE L2 -86 3186 3108 555 306 6 13 chr6 87514483 87514640 -101764914 + MER5B DNA MER1_type 20 175 -3 2471 286 139 39 chr6 87515092 87516609 -101762945 + L2 LINE L2 1641 3308 -5 21 36 0 0 chr6 87516953 87516981 -101762573 + AT_rich Low_complexity Low_complexity 1 28 0 407 286 29 116 chr6 87520304 87520615 -101758939 - L2 LINE L2 0 3313 3030 352 342 37 16 chr6 87520769 87521064 -101758490 - L2 LINE L2 -244 3069 2773 498 146 18 18 chr6 87521075 87521185 -101758369 - L1MA9 LINE L1 -33 6279 6170 1049 296 132 28 chr6 87521188 87521766 -101757788 - L2 LINE L2 -609 2705 2068 203 368 66 0 chr6 87521761 87521897 -101757657 - L2 LINE L2 -193 3079 2935 * 1934 160 0 0 chr6 87522697 87522985 -101756569 - AluJb SINE Alu -24 288 1 2191 136 50 19 chr6 87524438 87524856 -101754698 - L1MB1 LINE L1 0 6168 5738 291 125 31 31 chr6 87524902 87524966 -101754588 - MER116 DNA Mariner -11 69 6 417 273 119 14 chr6 87525103 87525246 -101754308 + MER5B DNA MER1_type 1 158 -20 465 283 151 5 chr6 87525812 87526017 -101753537 - MIR SINE MIR -27 235 1 254 194 15 0 chr6 87526038 87526105 -101753449 + CT-rich Low_complexity Low_complexity 3 70 0 270 0 0 0 chr6 87526528 87526566 -101752988 - L1PA6 LINE L1 0 6154 6117 * 1203 27 14 0 chr6 87526562 87526708 -101752846 - L1PA5 LINE L1 -313 5841 5694 * 19628 90 1 1 chr6 87526705 87529346 -101750208 - L1P LINE L1 -3502 2644 2 2031 149 22 38 chr6 87529776 87530146 -101749408 + THE1B LTR MaLR 1 364 0 1390 201 65 111 chr6 87530307 87530819 -101748735 + MLT1D LTR MaLR 18 505 0 225 239 56 42 chr6 87530820 87530891 -101748663 - MER103 DNA DNA -7 159 88 27 29 0 0 chr6 87531536 87531570 -101747984 + AT_rich Low_complexity Low_complexity 1 34 0 262 174 0 0 chr6 87531583 87531629 -101747925 - FLAM_A SINE Alu -63 69 24 28 29 0 0 chr6 87532320 87532355 -101747199 + AT_rich Low_complexity Low_complexity 1 35 0 585 249 133 0 chr6 87532793 87532958 -101746596 + MER5A DNA MER1_type 1 187 -2 32 0 0 0 chr6 87533811 87533843 -101745711 + AT_rich Low_complexity Low_complexity 1 32 0 836 178 49 63 chr6 87533856 87534142 -101745412 - L1MC5 LINE L1 -44 7917 7636 * 3838 59 2 0 chr6 87534122 87534645 -101744909 - L1PA5 LINE L1 -2739 3407 2884 15615 52 2 0 chr6 87534645 87537386 -101742168 + L1PA5 LINE L1 3411 6150 -4 1164 222 50 26 chr6 87537383 87537761 -101741793 - L1MC5 LINE L1 -298 7663 7277 533 236 37 93 chr6 87538188 87538404 -101741150 - LTR68 LTR ERV1 -536 204 1 2078 158 31 12 chr6 87538407 87538887 -101740667 + L1M2 LINE L1 5173 5659 -653 5811 229 36 12 chr6 87538903 87539258 -101740296 - L1PB1 LINE L1 -1 6150 5805 367 19 0 37 chr6 87539258 87539312 -101740242 + (TA)n Simple_repeat Simple_repeat 2 53 0 5811 229 36 12 chr6 87539312 87541697 -101737857 - L1PB1 LINE L1 -346 5805 3323 1021 209 72 128 chr6 87541850 87542587 -101736967 + LTR8A LTR ERV1 1 727 0 3514 183 48 15 chr6 87543166 87543966 -101735588 - LTR1B LTR ERV1 0 826 1 804 215 19 0 chr6 87544133 87544291 -101735263 + MER58B DNA MER1_type 180 340 -1 942 135 0 0 chr6 87544452 87544585 -101734969 + AluSq/x SINE Alu 1 133 -179 3638 73 4 0 chr6 87544839 87545319 -101734235 + L1PA7 LINE L1 5673 6154 0 1910 148 7 3 chr6 87546308 87546611 -101732943 - AluJb SINE Alu -8 304 1 1012 323 83 36 chr6 87546986 87547645 -101731909 + HAL1 LINE L1 1 690 -1817 554 285 0 0 chr6 87547682 87547840 -101731714 + MER105 DNA DNA 5 162 -42 347 122 0 0 chr6 87548013 87548062 -101731492 - LTR1B LTR ERV1 -716 110 62 1995 262 159 33 chr6 87548167 87549409 -101730145 + HAL1 LINE L1 995 2392 -115 232 424 98 25 chr6 87549416 87549782 -101729772 + L2 LINE L2 2874 3266 -6 27 49 0 0 chr6 87549847 87549888 -101729666 + AT_rich Low_complexity Low_complexity 1 41 0 1023 189 5 20 chr6 87550008 87550209 -101729345 + L1PB1 LINE L1 3 200 -6663 * 10086 108 50 5 chr6 87550193 87552364 -101727190 + L1PB1 LINE L1 625 3003 -3859 849 89 65 0 chr6 87552364 87552488 -101727066 + AluSc SINE Alu 1 132 -177 391 123 18 0 chr6 87552513 87552570 -101726984 + AluSp SINE Alu 115 172 -131 1100 151 6 11 chr6 87552579 87552758 -101726796 + AluSc SINE Alu 114 291 -18 9516 213 23 11 chr6 87552758 87552873 -101726681 + L1PB1 LINE L1 2996 3108 -3754 2277 101 0 0 chr6 87552873 87553170 -101726384 + AluY SINE Alu 1 297 -14 9516 213 23 11 chr6 87553170 87555302 -101724252 + L1PB1 LINE L1 3108 5270 -1592 301 215 182 50 chr6 87555412 87555533 -101724021 - LTR1B LTR ERV1 -689 137 1 2008 124 0 30 chr6 87555665 87555964 -101723590 - AluSx SINE Alu -22 290 1 2852 175 5 4 chr6 87556993 87557546 -101722008 - L1 LINE L1 -1512 4634 4081 415 277 184 45 chr6 87557612 87558024 -101721530 + HAL1b LINE L1 120 473 -875 1861 243 79 4 chr6 87558024 87558494 -101721060 - MLT1D LTR MaLR 0 505 1 415 277 184 45 chr6 87558494 87558858 -101720696 + HAL1b LINE L1 473 1004 -344 5338 137 7 3 chr6 87559100 87560170 -101719384 - L1PA16 LINE L1 -7 6159 5090 5451 91 34 17 chr6 87560181 87560985 -101718569 - L1PA10 LINE L1 0 6168 5352 5863 153 26 4 chr6 87561154 87562269 -101717285 + L1PB1 LINE L1 5361 6515 -352 231 88 0 0 chr6 87562269 87562303 -101717251 + (CA)n Simple_repeat Simple_repeat 2 35 0 5863 153 26 4 chr6 87562303 87562664 -101716890 + L1PB1 LINE L1 6515 6867 0 229 335 44 13 chr6 87563114 87563272 -101716282 - L2 LINE L2 -1261 2053 1891 270 308 110 21 chr6 87563753 87564181 -101715373 + L1 LINE L1 4370 4835 -1311 25 65 0 0 chr6 87564345 87564391 -101715163 + AT_rich Low_complexity Low_complexity 1 46 0 1221 304 65 19 chr6 87564578 87565163 -101714391 + L1MC4a LINE L1 5269 5880 -1928 316 302 60 27 chr6 87565538 87565687 -101713867 + L1 LINE L1 4824 4977 -1169 286 316 156 13 chr6 87566521 87566746 -101712808 + MIR SINE MIR 3 259 -3 1182 183 0 9 chr6 87567603 87567816 -101711738 + MSTA LTR MaLR 8 218 -210 363 182 0 0 chr6 87567811 87567877 -101711677 + MSTA LTR MaLR 363 428 0 * 2062 148 120 8 chr6 87568245 87568629 -101710925 + MSTA LTR MaLR 1 427 -1 8372 181 41 5 chr6 87568630 87570223 -101709331 + MSTA-int LTR MaLR 1 1651 0 2198 127 138 5 chr6 87570223 87570601 -101708953 + MSTA LTR MaLR 1 428 0 2780 168 137 102 chr6 87570881 87571425 -101708129 - L1MC3 LINE L1 -27 7758 7086 347 238 12 12 chr6 87571425 87571509 -101708045 - MLT1F1 LTR MaLR -442 125 42 2780 168 137 102 chr6 87571509 87571817 -101707737 - L1MC3 LINE L1 -699 7086 6790 6902 57 13 15 chr6 87572410 87573690 -101705864 - L1PA7 LINE L1 -1 6153 4873 486 127 0 51 chr6 87573690 87573769 -101705785 + L1P3 LINE L1 1052 1126 -5335 851 158 8 0 chr6 87573795 87573922 -101705632 - FLAM_C SINE Alu -15 128 1 278 302 117 34 chr6 87574024 87574229 -101705325 - L2 LINE L2 -14 3299 3078 1152 281 175 29 chr6 87574241 87574955 -101704599 - L2 LINE L2 -164 3149 2327 1783 175 27 72 chr6 87574956 87575401 -101704153 - MSTB1 LTR MaLR -7 425 1 356 227 91 0 chr6 87575401 87575489 -101704065 - L2 LINE L2 -983 2331 2236 5664 141 17 7 chr6 87575489 87576452 -101703102 - L1MA4 LINE L1 0 6300 5329 208 139 0 0 chr6 87576452 87576488 -101703066 - L2 LINE L2 -1065 2249 2214 1465 300 107 19 chr6 87576536 87577179 -101702375 - ERVL LTR ERVL -1172 4592 3893 1016 353 34 5 chr6 87577489 87577906 -101701648 - ERVL LTR ERVL -2239 3525 3097 2315 251 47 27 chr6 87578136 87578802 -101700752 - L1M4b LINE L1 -5563 1296 618 241 269 93 19 chr6 87578788 87578896 -101700658 - L1M4b LINE L1 -6730 129 14 * 2070 239 58 15 chr6 87578924 87579867 -101699687 - L1MB7 LINE L1 -5 6666 5615 414 0 0 0 chr6 87579867 87579913 -101699641 + (TA)n Simple_repeat Simple_repeat 2 47 0 2070 239 58 15 chr6 87579913 87580055 -101699499 - L1MB7 LINE L1 -1056 5615 5481 2833 238 31 78 chr6 87580089 87581019 -101698535 - L1MB7 LINE L1 -5640 902 17 22 70 0 0 chr6 87581273 87581316 -101698238 + AT_rich Low_complexity Low_complexity 1 43 0 300 344 46 20 chr6 87582863 87583058 -101696496 - HAL1b LINE L1 -759 589 390 22 0 0 0 chr6 87583195 87583217 -101696337 + AT_rich Low_complexity Low_complexity 1 22 0 212 0 36 0 chr6 87584090 87584118 -101695436 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2209 191 49 7 chr6 87584348 87584798 -101694756 - MER70A LTR ERVL 0 472 4 2206 195 5 10 chr6 87584807 87585212 -101694342 - MER70A-int LTR ERVL 0 5023 4621 8714 137 19 25 chr6 87585334 87586834 -101692720 - L1P LINE L1 -877 5269 3779 2146 134 3 0 chr6 87586835 87587142 -101692412 - AluSx SINE Alu -1 311 4 4368 66 2 0 chr6 87587158 87587715 -101691839 - L1PA7 LINE L1 -1 6153 5596 870 79 0 0 chr6 87587786 87587900 -101691654 - L1PA7 LINE L1 -551 5603 5490 * 1956 128 8 81 chr6 87587894 87588276 -101691278 - L1P LINE L1 -2378 3768 3415 2043 147 0 0 chr6 87588732 87589031 -101690523 + AluSx SINE Alu 1 299 -13 205 388 139 0 chr6 87589173 87589302 -101690252 + L2 LINE L2 3122 3268 -4 420 179 13 0 chr6 87590558 87590636 -101688918 - MIR SINE MIR -64 144 66 449 276 164 14 chr6 87590661 87590875 -101688679 - MLT1I LTR MaLR -2 407 162 355 256 114 31 chr6 87591345 87591669 -101687885 - L1MDa LINE L1 -4512 2028 1678 228 309 88 28 chr6 87591707 87591771 -101687783 - L1MDa LINE L1 -5651 879 820 2501 77 0 0 chr6 87591771 87592082 -101687472 + AluY SINE Alu 1 311 0 228 309 88 28 chr6 87592082 87592198 -101687356 - L1MDa LINE L1 -5710 820 688 288 0 0 0 chr6 87592515 87592547 -101687007 + (TG)n Simple_repeat Simple_repeat 1 32 0 225 0 0 0 chr6 87594406 87594431 -101685123 + (A)n Simple_repeat Simple_repeat 1 25 0 2357 57 13 7 chr6 87594745 87595045 -101684509 + AluY SINE Alu 1 302 -9 25 0 0 0 chr6 87597907 87597932 -101681622 + AT_rich Low_complexity Low_complexity 1 25 0 4966 156 56 59 chr6 87597932 87599807 -101679747 - L1MA8 LINE L1 -5 6286 4394 2040 125 3 3 chr6 87599807 87600102 -101679452 + AluSg SINE Alu 1 295 -15 342 0 0 0 chr6 87600614 87600652 -101678902 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 468 160 20 0 chr6 87600656 87600756 -101678798 - L1MA7 LINE L1 -6 6285 6184 23 0 0 0 chr6 87601079 87601102 -101678452 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr6 87601950 87601979 -101677575 + AT_rich Low_complexity Low_complexity 1 29 0 3827 43 0 0 chr6 87602226 87602688 -101676866 + L1PA5 LINE L1 5691 6152 -2 1216 249 115 80 chr6 87603229 87603991 -101675563 + L1MC5 LINE L1 6559 7355 -606 387 0 0 0 chr6 87603991 87604034 -101675520 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1216 249 115 80 chr6 87604034 87604095 -101675459 + L1MC5 LINE L1 7355 7412 -549 504 242 123 28 chr6 87604116 87604401 -101675153 + L1MC5 LINE L1 7599 7910 -51 2490 77 3 0 chr6 87604591 87604901 -101674653 + AluY SINE Alu 1 311 0 1678 234 94 19 chr6 87606704 87607182 -101672372 + LTR40a LTR ERVL 1 514 -5 2509 42 0 42 chr6 87607987 87608299 -101671255 - AluY SINE Alu -12 299 1 275 219 6 60 chr6 87608977 87609088 -101670466 + HsTC2 DNA Tc2 3 1898 0 719 328 106 15 chr6 87609096 87609502 -101670052 + LTR33 LTR ERVL 9 451 -70 572 196 46 0 chr6 87609526 87609700 -101669854 - L1MA9 LINE L1 -22 6290 6013 324 264 78 93 chr6 87610620 87610813 -101668741 + ERVL LTR ERVL 1233 1422 -4342 1565 331 49 41 chr6 87611143 87612102 -101667452 + ERVL LTR ERVL 1799 2765 -2999 687 308 80 12 chr6 87612235 87612661 -101666893 + ERVL LTR ERVL 3040 3517 -2137 841 355 46 21 chr6 87613097 87613657 -101665897 + ERVL LTR ERVL 4250 4823 -941 1665 237 19 77 chr6 87613778 87614015 -101665539 - MLT1D LTR MaLR -12 493 301 2087 132 6 0 chr6 87614015 87614326 -101665228 - AluSq SINE Alu 0 313 1 1665 237 19 77 chr6 87614326 87614611 -101664943 - MLT1D LTR MaLR -204 301 1 1170 314 62 19 chr6 87614835 87615303 -101664251 + LTR33 LTR ERVL 34 521 0 366 298 21 44 chr6 87615653 87615964 -101663590 + L1ME LINE L1 34 623 -5907 633 311 67 42 chr6 87616310 87617077 -101662477 + L1ME LINE L1 798 1470 -4968 2863 181 62 6 chr6 87617084 87617709 -101661845 - L1MB7 LINE L1 -103 6081 5422 2095 133 0 13 chr6 87617746 87618048 -101661506 + AluSx SINE Alu 1 298 -14 215 234 0 0 chr6 87618049 87618096 -101661458 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 238 317 40 30 chr6 87618097 87618198 -101661356 + MIR SINE MIR 161 262 0 192 340 175 0 chr6 87618783 87618880 -101660674 + L2 LINE L2 3126 3239 -33 867 195 6 12 chr6 87618908 87619072 -101660482 + FRAM SINE Alu 1 162 -14 327 280 0 20 chr6 87619143 87619243 -101660311 - MIR SINE MIR -16 246 149 1901 180 23 17 chr6 87619358 87619708 -101659846 - MLT1A1 LTR MaLR -4 361 10 300 186 0 17 chr6 87620409 87620468 -101659086 + MLT1I LTR MaLR 352 409 0 342 183 219 43 chr6 87620614 87620778 -101658776 + L1MC5 LINE L1 7724 7916 -45 412 328 52 6 chr6 87621256 87621430 -101658124 + MIR SINE MIR 51 232 -30 1310 132 45 12 chr6 87622207 87622449 -101657105 + LTR1 LTR ERV1 1 250 -535 555 175 141 97 chr6 87622485 87622691 -101656863 + LTR1 LTR ERV1 203 417 -368 2141 117 9 23 chr6 87622791 87623133 -101656421 + LTR1 LTR ERV1 447 783 -2 350 272 45 0 chr6 87623380 87623515 -101656039 + L1MC/D LINE L1 5693 5833 -301 1650 191 33 55 chr6 87623578 87623998 -101655556 - L1MA10 LINE L1 -15 6319 5909 3097 207 45 39 chr6 87624005 87624820 -101654734 + LTR1B LTR ERV1 7 826 0 2728 185 51 6 chr6 87624821 87625366 -101654188 - L1MA10 LINE L1 -278 5911 5342 481 118 79 0 chr6 87625458 87625534 -101654020 - AluSg/x SINE Alu -15 294 213 848 108 0 0 chr6 87625534 87625645 -101653909 - AluSc SINE Alu -52 257 147 602 150 17 50 chr6 87625647 87625767 -101653787 + MLT2B2 LTR ERVL 400 515 0 582 338 9 14 chr6 87626197 87626413 -101653141 + L1MC/D LINE L1 5563 5777 -2031 10255 175 20 32 chr6 87626563 87628422 -101651132 - MER70A-int LTR ERVL -1565 3458 1621 1634 137 134 0 chr6 87628416 87628708 -101650846 - MER70A-int LTR ERVL -3826 1197 867 * 2773 150 71 8 chr6 87628708 87629197 -101650357 - LTR64 LTR ERVK 0 558 33 2945 97 10 76 chr6 87629197 87629682 -101649872 + MLT2A2 LTR ERVL 1 453 0 2773 150 71 8 chr6 87629682 87629711 -101649843 - LTR64 LTR ERVK -525 33 7 252 105 0 0 chr6 87629711 87629749 -101649805 - L1MA2 LINE L1 -13 6291 6254 3710 168 100 57 chr6 87629776 87630604 -101648950 - MER70A-int LTR ERVL -4159 864 1 2241 217 30 4 chr6 87630604 87631064 -101648490 - MER70A LTR ERVL 0 472 1 272 349 64 44 chr6 87633958 87634393 -101645161 + MLT1K LTR MaLR 140 583 -5 34 0 0 0 chr6 87635677 87635711 -101643843 + AT_rich Low_complexity Low_complexity 1 34 0 569 172 76 97 chr6 87636384 87636529 -101643025 - MSTA LTR MaLR -310 147 1 329 169 28 14 chr6 87637127 87637198 -101642356 - HAL1 LINE L1 -590 1917 1846 2082 141 32 16 chr6 87637199 87637568 -101641986 + THE1C LTR MaLR 1 375 0 3316 77 5 7 chr6 87637579 87638019 -101641535 + THE1C-int LTR MaLR 1142 1580 0 2328 124 13 24 chr6 87638019 87638398 -101641156 + THE1C LTR MaLR 1 375 0 4108 180 63 19 chr6 87638618 87639394 -101640160 + MER21B LTR ERV1 3 812 -51 2027 168 58 15 chr6 87639410 87639789 -101639765 + MSTD LTR MaLR 11 396 0 538 275 79 0 chr6 87639789 87639967 -101639587 - HAL1 LINE L1 -883 1624 1433 1021 271 105 21 chr6 87639977 87640302 -101639252 + MER45C DNA AcHobo 1 352 -601 1221 273 105 19 chr6 87640331 87640742 -101638812 + MER45C DNA AcHobo 503 948 -5 4888 133 14 0 chr6 87641185 87641974 -101637580 - L1MA3 LINE L1 0 6305 5506 19985 185 28 13 chr6 87641976 87644712 -101634842 - L1 LINE L1 -2334 5231 2381 1881 132 11 7 chr6 87644712 87645035 -101634519 - AluSx SINE Alu 0 324 1 19985 185 28 13 chr6 87645035 87647440 -101632114 - L1 LINE L1 -5184 2381 12 311 264 73 81 chr6 87647551 87647824 -101631730 - HAL1 LINE L1 -1575 932 662 249 119 0 0 chr6 87647986 87648028 -101631526 + (TAA)n Simple_repeat Simple_repeat 3 44 0 758 61 0 0 chr6 87648571 87648669 -101630885 + L1PA3 LINE L1 1 98 -6048 * 36185 42 26 2 chr6 87648663 87654054 -101625500 + L1PA3 LINE L1 617 6124 -31 284 25 50 0 chr6 87654054 87654094 -101625460 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 36185 42 26 2 chr6 87654094 87654127 -101625427 + L1PA3 LINE L1 6124 6155 0 6628 76 33 49 chr6 87654200 87656057 -101623497 - SVA Other Other -551 1386 17 24688 110 115 71 chr6 87656195 87661104 -101618450 - L1P LINE L1 -1009 5137 12 297 291 32 63 chr6 87661284 87661442 -101618112 + LTR33 LTR ERVL 62 214 -307 432 250 151 16 chr6 87661469 87661661 -101617893 + LTR33 LTR ERVL 302 519 -2 2015 136 3 0 chr6 87661746 87662041 -101617513 - AluSc SINE Alu -13 296 1 28 61 0 0 chr6 87662049 87662098 -101617456 + AT_rich Low_complexity Low_complexity 1 49 0 191 279 66 57 chr6 87662774 87662896 -101616658 + MER5A DNA MER1_type 67 189 0 270 348 27 36 chr6 87663415 87663527 -101616027 + L2 LINE L2 303 413 -2901 1184 189 76 121 chr6 87663707 87664194 -101615360 - MER4C LTR ERV1 0 465 1 21 89 0 0 chr6 87664407 87664463 -101615091 + AT_rich Low_complexity Low_complexity 1 56 0 200 143 26 26 chr6 87664516 87664593 -101614961 + (TA)n Simple_repeat Simple_repeat 2 78 0 28 29 0 0 chr6 87666504 87666539 -101613015 + AT_rich Low_complexity Low_complexity 1 35 0 7538 174 161 14 chr6 87667716 87669246 -101610308 + MER52A LTR ERV1 1 1755 0 1048 260 71 73 chr6 87669422 87670542 -101609012 - L1ME3A LINE L1 -219 5951 4832 946 244 18 4 chr6 87670640 87670865 -101608689 - L1PB4 LINE L1 -4 6152 5925 313 277 190 24 chr6 87670858 87671111 -101608443 + L1PB4 LINE L1 5631 5925 -239 * 24 0 0 0 chr6 87671162 87671186 -101608368 + AT_rich Low_complexity Low_complexity 1 24 0 1816 159 8 37 chr6 87671186 87671539 -101608015 - L1PB4 LINE L1 0 6156 5814 4405 95 7 3 chr6 87671539 87672155 -101607399 - L1PA11 LINE L1 0 6174 5553 7518 149 5 21 chr6 87672156 87673208 -101606346 - L1PA11 LINE L1 -843 5303 4276 1780 176 31 0 chr6 87673208 87673498 -101606056 + AluSx SINE Alu 3 301 -11 7518 149 5 21 chr6 87673498 87673789 -101605765 - L1PA11 LINE L1 -1870 4276 3982 3678 104 51 33 chr6 87673790 87674761 -101604793 - MER11A LTR ERVK 0 1071 3 4037 155 6 6 chr6 87674761 87675465 -101604089 - L1PA11 LINE L1 -2158 3988 3285 4613 181 22 31 chr6 87675466 87677027 -101602527 - L1PB4 LINE L1 -330 5826 4285 373 236 63 0 chr6 87677025 87677152 -101602402 - L1PB4 LINE L1 -2800 3346 3212 * 514 284 98 22 chr6 87677208 87677892 -101601662 - L1MEc LINE L1 -2921 3208 2473 385 288 30 59 chr6 87677993 87678229 -101601325 - L1MEc LINE L1 -3698 2431 2203 31 102 0 0 chr6 87678551 87678659 -101600895 + AT_rich Low_complexity Low_complexity 1 108 0 293 310 60 33 chr6 87678766 87679246 -101600308 - L1MEc LINE L1 -4671 1639 1147 400 338 113 24 chr6 87679256 87679629 -101599925 - L1MEc LINE L1 -5026 1093 688 598 289 16 11 chr6 87680357 87680544 -101599010 + MIR SINE MIR 1 188 -74 438 183 22 70 chr6 87680784 87681104 -101598450 + (TA)n Simple_repeat Simple_repeat 1 304 0 302 306 81 38 chr6 87681979 87682188 -101597366 + L2 LINE L2 3078 3295 -18 707 272 60 10 chr6 87683112 87683330 -101596224 - MIR SINE MIR -29 233 8 400 230 102 91 chr6 87683672 87683946 -101595608 - L1ME3A LINE L1 -170 5994 5718 * 557 240 14 101 chr6 87683940 87684148 -101595406 + L1ME LINE L1 5534 5723 -447 332 304 65 59 chr6 87684214 87684569 -101594985 - L1ME3A LINE L1 -417 5745 5389 287 254 105 72 chr6 87684612 87685042 -101594512 - L1ME3A LINE L1 -800 5346 4903 249 353 0 0 chr6 87685127 87685212 -101594342 - L2 LINE L2 -1514 1800 1716 299 258 97 16 chr6 87685478 87685602 -101593952 - MLT1L LTR MaLR -114 501 368 629 264 28 33 chr6 87685701 87685883 -101593671 + MER20 DNA MER1_type 18 198 -21 313 302 70 16 chr6 87685923 87686052 -101593502 + L2 LINE L2 2748 2883 -431 226 250 153 28 chr6 87686069 87686213 -101593341 + L2 LINE L2 3032 3193 -120 27 49 0 0 chr6 87686847 87686888 -101592666 + AT_rich Low_complexity Low_complexity 1 41 0 828 261 50 4 chr6 87687292 87687533 -101592021 - MER46C DNA MER2_type -14 324 73 218 189 151 0 chr6 87687620 87687673 -101591881 - MIR SINE MIR -10 252 192 250 250 0 0 chr6 87687712 87687764 -101591790 - MIR SINE MIR -170 92 41 305 385 39 43 chr6 87688738 87688946 -101590608 - L2 LINE L2 -1 3271 3065 1467 201 69 59 chr6 87689449 87689841 -101589713 + MSTD LTR MaLR 1 396 0 330 235 11 54 chr6 87690559 87690661 -101588893 + L2 LINE L2 3143 3281 -32 234 333 59 0 chr6 87692429 87692531 -101587023 + L2 LINE L2 3204 3311 -2 207 100 0 0 chr6 87692542 87692572 -101586982 + (TGGA)n Simple_repeat Simple_repeat 4 33 0 555 264 97 35 chr6 87692765 87692992 -101586562 - MLT1F LTR MaLR 0 542 302 197 347 0 13 chr6 87693261 87693336 -101586218 + L2 LINE L2 3235 3308 -5 1431 330 128 24 chr6 87693446 87694779 -101584775 - L2 LINE L2 -76 3237 1767 6466 87 5 8 chr6 87694965 87695852 -101583702 - L1PA7 LINE L1 -2 6152 5269 229 324 29 0 chr6 87695978 87696083 -101583471 - L1MC/D LINE L1 -2267 5541 5434 326 309 0 0 chr6 87696095 87696189 -101583365 - L1MC4 LINE L1 -1339 6703 6610 2965 213 19 12 chr6 87696189 87696878 -101582676 - L1MB5 LINE L1 -15 6159 5466 3984 160 19 4 chr6 87696878 87697603 -101581951 + L1MA6 LINE L1 5558 6300 0 254 194 0 48 chr6 87698365 87698427 -101581127 + A-rich Low_complexity Low_complexity 5 63 0 23 33 0 0 chr6 87699223 87699253 -101580301 + AT_rich Low_complexity Low_complexity 1 30 0 189 363 99 11 chr6 87701421 87701512 -101578042 - L2 LINE L2 -23 3249 3151 26 0 0 0 chr6 87702621 87702647 -101576907 + AT_rich Low_complexity Low_complexity 1 26 0 3934 153 5 1 chr6 87702687 87703353 -101576201 - L1PB4 LINE L1 -2 6154 5487 551 247 64 56 chr6 87704048 87704421 -101575133 + L1MC5 LINE L1 7538 7913 -48 300 271 54 0 chr6 87704439 87704568 -101574986 - L1ME4a LINE L1 -4 6117 5982 21 71 0 0 chr6 87704592 87704634 -101574920 + AT_rich Low_complexity Low_complexity 1 42 0 185 320 0 40 chr6 87705300 87705350 -101574204 + L2 LINE L2 3139 3186 -86 25 0 0 0 chr6 87705764 87705789 -101573765 + AT_rich Low_complexity Low_complexity 1 25 0 1580 100 45 0 chr6 87706559 87706779 -101572775 - MER30 DNA MER1_type 0 230 1 21 36 0 0 chr6 87707265 87707293 -101572261 + AT_rich Low_complexity Low_complexity 1 28 0 226 430 62 0 chr6 87707293 87707421 -101572133 - MER91A DNA MER1_type -55 141 6 231 234 138 0 chr6 87710279 87710373 -101569181 + L1ME4a LINE L1 5979 6085 -36 309 328 70 13 chr6 87710566 87710868 -101568686 + L1ME LINE L1 5364 5682 -439 27 73 0 0 chr6 87710932 87710987 -101568567 + AT_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr6 87711740 87711762 -101567792 + AT_rich Low_complexity Low_complexity 1 22 0 523 356 36 5 chr6 87711765 87711987 -101567567 - MIR SINE MIR -33 229 1 8034 241 71 37 chr6 87712015 87712824 -101566730 + L1MDa LINE L1 14 794 -5746 381 22 0 0 chr6 87712824 87712870 -101566684 + (TC)n Simple_repeat Simple_repeat 1 46 0 8034 241 71 37 chr6 87712870 87714651 -101564903 + L1MDa LINE L1 794 2710 -3830 1937 159 0 0 chr6 87714651 87714946 -101564608 + AluSx SINE Alu 3 297 -15 8034 241 71 37 chr6 87714946 87715233 -101564321 + L1MDa LINE L1 2710 2986 -3554 356 138 32 75 chr6 87715257 87715445 -101564109 + (TA)n Simple_repeat Simple_repeat 1 180 0 4253 240 47 46 chr6 87715454 87717265 -101562289 + L1MDa LINE L1 3008 4820 -1720 6151 101 4 0 chr6 87717312 87718308 -101561246 - L1PA14 LINE L1 0 6161 5158 1127 218 29 7 chr6 87718308 87718615 -101560939 + L1P LINE L1 2973 3286 -2860 337 318 88 18 chr6 87718616 87718833 -101560721 - L1M4 LINE L1 -2666 3978 3747 21 36 0 0 chr6 87719058 87719086 -101560468 + AT_rich Low_complexity Low_complexity 1 28 0 331 259 28 42 chr6 87719177 87719389 -101560165 - L1MEc LINE L1 -5307 1235 1027 410 339 27 9 chr6 87719834 87720055 -101559499 - L1MEc LINE L1 -6090 735 511 30 45 0 0 chr6 87720103 87720147 -101559407 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr6 87720287 87720315 -101559239 + AT_rich Low_complexity Low_complexity 1 28 0 378 213 213 51 chr6 87720356 87720553 -101559001 - LTR41 LTR ERVL -1 772 544 9438 55 99 8 chr6 87720998 87722314 -101557240 - L1P LINE L1 -4711 1435 1 505 279 32 7 chr6 87722343 87722497 -101557057 - LTR41 LTR ERVL -610 163 6 22 56 0 0 chr6 87723179 87723215 -101556339 + AT_rich Low_complexity Low_complexity 1 36 0 270 0 0 0 chr6 87723927 87723957 -101555597 + (TG)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chr6 87723956 87723978 -101555576 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 311 332 75 20 chr6 87724750 87724949 -101554605 - MIR SINE MIR -47 215 6 2321 97 3 0 chr6 87725272 87725583 -101553971 - AluSp SINE Alu -1 312 1 183 205 0 0 chr6 87725718 87725757 -101553797 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 513 338 73 15 chr6 87726286 87726614 -101552940 - L3 LINE CR1 -3 1574 1228 260 380 43 0 chr6 87726606 87726698 -101552856 - L2 LINE L2 -6 3266 3171 * 248 312 65 0 chr6 87727096 87727189 -101552365 - L3 LINE CR1 -350 1227 1129 286 294 49 20 chr6 87727449 87727551 -101552003 - L3 LINE CR1 -488 1089 985 184 387 0 13 chr6 87727682 87727757 -101551797 + MIR SINE MIR 20 93 -115 391 292 36 29 chr6 87729101 87729238 -101550316 - L2 LINE L2 -4 3309 3172 583 306 23 70 chr6 87729999 87730208 -101549346 + L1MEd LINE L1 506 723 -5396 2041 92 71 0 chr6 87730208 87730490 -101549064 + AluSp SINE Alu 1 302 -11 583 306 23 70 chr6 87730490 87730796 -101548758 + L1MEd LINE L1 723 997 -5122 341 411 57 19 chr6 87732469 87732785 -101546769 + L3 LINE CR1 1215 1542 -35 29 0 0 0 chr6 87732836 87732865 -101546689 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 87733061 87733089 -101546465 + AT_rich Low_complexity Low_complexity 1 28 0 2340 159 51 7 chr6 87733804 87734218 -101545336 - MSTB1 LTR MaLR 0 432 1 22 0 0 0 chr6 87734663 87734685 -101544869 + AT_rich Low_complexity Low_complexity 1 22 0 245 333 10 10 chr6 87735386 87735490 -101544064 - MLT1L LTR MaLR -181 434 250 202 324 126 9 chr6 87735903 87736014 -101543540 + L2 LINE L2 3190 3313 0 7624 16 0 0 chr6 87736326 87737199 -101542355 + L1PA3 LINE L1 5280 6152 -3 490 342 79 18 chr6 87738139 87738367 -101541187 - MIR SINE MIR 0 262 21 2212 127 13 24 chr6 87738510 87738887 -101540667 - THE1C LTR MaLR 0 375 3 9236 126 38 41 chr6 87738889 87740474 -101539080 - THE1C-int LTR MaLR 0 1580 1 1895 120 91 20 chr6 87740474 87740824 -101538730 - THE1C LTR MaLR 0 375 1 1935 145 119 10 chr6 87740859 87741245 -101538309 + MSTA LTR MaLR 1 428 0 599 305 18 73 chr6 87742811 87743139 -101536415 - MLT1J LTR MaLR -46 465 156 201 344 78 0 chr6 87743598 87743726 -101535828 + L2 LINE L2 3175 3312 -1 2262 112 11 41 chr6 87743860 87744226 -101535328 - THE1A LTR MaLR 0 355 1 985 256 96 25 chr6 87744297 87744621 -101534933 + MLT1A1 LTR MaLR 19 365 0 198 208 0 0 chr6 87744729 87744782 -101534772 + GA-rich Low_complexity Low_complexity 1 53 0 41713 39 23 2 chr6 87745419 87751468 -101528086 - L1PA3 LINE L1 0 6155 1 337 277 95 36 chr6 87751472 87751609 -101527945 - L1MC4 LINE L1 -456 7586 7442 223 146 36 0 chr6 87751611 87751666 -101527888 + (TA)n Simple_repeat Simple_repeat 2 58 0 323 366 44 26 chr6 87751902 87752129 -101527425 - L2 LINE L2 -575 2739 2509 8749 230 52 42 chr6 87752574 87756147 -101523407 + L1MB3 LINE L1 19 3552 -2867 2449 61 0 0 chr6 87756147 87756442 -101523112 - AluY SINE Alu -16 295 1 8749 230 52 42 chr6 87756442 87757511 -101522043 + L1MB3 LINE L1 3552 4608 -1811 1210 206 134 38 chr6 87757511 87757563 -101521991 + MSTB2 LTR MaLR 1 47 -410 1526 180 9 25 chr6 87757563 87757879 -101521675 - AluJb SINE Alu -1 311 1 1210 206 134 38 chr6 87757879 87758243 -101521311 + MSTB2 LTR MaLR 47 457 0 8749 230 52 42 chr6 87758243 87759470 -101520084 + L1MB3 LINE L1 4608 6029 -390 185 62 0 31 chr6 87759668 87759700 -101519854 + (TA)n Simple_repeat Simple_repeat 1 31 0 1978 153 19 19 chr6 87759702 87760081 -101519473 + L1MB3 LINE L1 6033 6411 -8 673 296 61 9 chr6 87760090 87760303 -101519251 + MIR SINE MIR 20 243 -19 599 334 15 23 chr6 87761057 87761338 -101518216 + MLT1I LTR MaLR 94 338 -71 459 230 36 42 chr6 87761358 87761523 -101518031 - MER112 DNA MER1_type -83 177 14 326 304 43 22 chr6 87761848 87761986 -101517568 + L3 LINE CR1 1436 1576 -1 245 390 22 15 chr6 87762607 87762743 -101516811 - L2 LINE L2 -15 3257 3121 236 278 196 10 chr6 87763264 87763361 -101516193 + L2 LINE L2 3198 3312 -1 252 136 0 0 chr6 87763830 87763874 -101515680 - MADE1 DNA Mariner -36 44 1 24 0 0 0 chr6 87764272 87764296 -101515258 + AT_rich Low_complexity Low_complexity 1 24 0 2313 62 0 3 chr6 87764814 87765104 -101514450 - AluY SINE Alu -9 302 14 22 0 0 0 chr6 87765193 87765215 -101514339 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr6 87765496 87765543 -101514011 + AT_rich Low_complexity Low_complexity 1 47 0 464 325 104 51 chr6 87765543 87766293 -101513261 + L1M4 LINE L1 3166 3955 -2191 205 197 30 0 chr6 87766366 87766432 -101513122 + (TA)n Simple_repeat Simple_repeat 1 68 0 294 272 118 40 chr6 87766432 87766906 -101512648 + L1M4 LINE L1 4326 4836 -1310 1513 197 3 17 chr6 87766984 87767279 -101512275 + L1MA4A LINE L1 5443 5733 -450 6115 200 35 18 chr6 87767283 87768749 -101510805 + L1M3f LINE L1 7 1487 -4065 319 213 0 0 chr6 87768749 87768810 -101510744 + MSTA LTR MaLR 368 428 0 8931 174 24 4 chr6 87768810 87770430 -101509124 + MSTA-int LTR MaLR 1 1651 0 2449 161 26 14 chr6 87770432 87770848 -101508706 + MSTA LTR MaLR 3 423 -5 580 214 290 11 chr6 87770852 87771128 -101508426 - L1 LINE L1 -1457 4689 4337 1755 124 8 8 chr6 87771129 87771388 -101508166 + THE1C LTR MaLR 3 261 -114 634 302 82 4 chr6 87773061 87773335 -101506219 + L2 LINE L2 2688 2988 -325 299 336 44 22 chr6 87773364 87773501 -101506053 + L2 LINE L2 3133 3272 0 481 286 34 0 chr6 87773516 87773663 -101505891 + L1MEd LINE L1 3 154 -5965 2065 102 3 33 chr6 87774007 87774311 -101505243 + AluSg SINE Alu 1 295 -15 462 50 68 43 chr6 87774311 87774472 -101505082 + (TA)n Simple_repeat Simple_repeat 1 165 0 434 229 55 9 chr6 87774970 87775079 -101504475 - MLT1A2 LTR MaLR -260 114 1 1687 169 42 9 chr6 87775403 87775740 -101503814 + L1MA4A LINE L1 5932 6279 -24 28 29 0 0 chr6 87775813 87775848 -101503706 + AT_rich Low_complexity Low_complexity 1 35 0 279 122 0 0 chr6 87775859 87775908 -101503646 + (TG)n Simple_repeat Simple_repeat 2 50 0 376 304 126 46 chr6 87776246 87776897 -101502657 - L1 LINE L1 -2970 3176 2474 706 161 8 0 chr6 87777152 87777276 -101502278 - L1PB4 LINE L1 -2 6154 6030 3088 148 100 2 chr6 87777279 87777888 -101501666 - L1PB4 LINE L1 -221 5935 5262 320 308 26 43 chr6 87778078 87778195 -101501359 + MLT1K LTR MaLR 43 157 -431 1295 240 0 8 chr6 87778605 87778863 -101500691 + AluJo SINE Alu 1 256 -56 189 0 0 0 chr6 87778863 87778884 -101500670 + (A)n Simple_repeat Simple_repeat 1 21 0 21 36 0 0 chr6 87778958 87778986 -101500568 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr6 87779151 87779196 -101500358 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr6 87780528 87780558 -101498996 + AT_rich Low_complexity Low_complexity 1 30 0 24 91 0 0 chr6 87780746 87780812 -101498742 + AT_rich Low_complexity Low_complexity 1 66 0 4046 251 68 48 chr6 87781206 87782643 -101496911 + L1M4 LINE L1 24 1488 -5054 4027 263 25 14 chr6 87782626 87784007 -101495547 + L1M4 LINE L1 4266 5661 -983 * 3466 238 65 39 chr6 87783990 87786097 -101493457 + L1MD1 LINE L1 4062 6242 0 * 20114 167 25 34 chr6 87786346 87790989 -101488565 + L1MA1 LINE L1 14 4544 -3177 2406 63 0 6 chr6 87790989 87791307 -101488247 + L1PA6 LINE L1 5839 6154 0 20114 167 25 34 chr6 87791307 87794455 -101485099 + L1MA1 LINE L1 4544 7716 -5 252 389 14 29 chr6 87795274 87795413 -101484141 - L2 LINE L2 -2815 499 363 354 279 9 36 chr6 87795746 87795857 -101483697 - L2 LINE L2 -35 3278 3171 2306 178 98 37 chr6 87797009 87797077 -101482477 - MLT2B1 LTR ERVL 0 520 458 1072 214 17 29 chr6 87797077 87797315 -101482239 + MER8 DNA MER2_type 4 238 -1 2306 178 98 37 chr6 87797315 87797736 -101481818 - MLT2B1 LTR ERVL -62 458 1 596 296 30 39 chr6 87798487 87798675 -101480879 + MIR SINE MIR 17 204 -58 14966 151 25 27 chr6 87798675 87799027 -101480527 - Tigger4(Zombi) DNA MER2_type 0 2731 2380 2005 54 93 40 chr6 87799027 87799305 -101480249 - AluY SINE Alu -18 293 1 14966 151 25 27 chr6 87799305 87801687 -101477867 - Tigger4(Zombi) DNA MER2_type -351 2380 1 596 296 30 39 chr6 87801687 87801731 -101477823 + MIR SINE MIR 204 247 -15 5083 156 13 9 chr6 87802508 87803693 -101475861 + L1P4 LINE L1 4406 5596 -565 2470 200 28 15 chr6 87803663 87804203 -101475351 + L1PA15-16 LINE L1 2373 2919 -3930 * 42054 38 22 3 chr6 87804204 87810264 -101469290 + L1PA3 LINE L1 5 6181 0 1793 267 17 9 chr6 87810264 87810789 -101468765 + L1PA15-16 LINE L1 2905 3433 -3416 2173 117 49 26 chr6 87810844 87811194 -101468360 + THE1B LTR MaLR 7 364 0 10861 121 4 6 chr6 87811194 87812777 -101466777 + THE1B-int LTR MaLR 1 1580 0 2071 132 48 25 chr6 87812777 87813133 -101466421 + THE1B LTR MaLR 1 364 0 5363 229 26 7 chr6 87813147 87814522 -101465032 + L1PA15-16 LINE L1 3492 4893 -1956 347 277 54 0 chr6 87814524 87814636 -101464918 + L1PA16 LINE L1 2480 2597 -3549 5140 186 24 1 chr6 87814649 87816627 -101462927 + L1PA16 LINE L1 4193 6163 -3 213 389 75 36 chr6 87816940 87817246 -101462308 + L2 LINE L2 2955 3272 0 600 296 118 41 chr6 87817270 87817736 -101461818 + MLT1J LTR MaLR 1 502 -9 533 267 82 31 chr6 87818076 87818271 -101461283 + MER63A DNA MER1_type 4 208 -2 365 302 47 89 chr6 87818281 87818731 -101460823 - MLT1H LTR MaLR -1 548 118 3302 180 33 25 chr6 87818817 87819543 -101460011 + L1MB2 LINE L1 5439 6170 -1 1448 294 49 22 chr6 87819549 87820043 -101459511 + MLT1G LTR MaLR 24 530 -60 3086 207 89 10 chr6 87820058 87820835 -101458719 - L1MB7 LINE L1 -8 6176 5339 655 256 17 34 chr6 87820867 87821105 -101458449 + L1MA9 LINE L1 6039 6272 -40 751 187 6 6 chr6 87821123 87821289 -101458265 - L1MB7 LINE L1 -809 5337 5172 35 0 0 0 chr6 87821783 87821818 -101457736 + AT_rich Low_complexity Low_complexity 1 35 0 7645 29 0 0 chr6 87821818 87823080 -101456474 - L1PA3 LINE L1 -3 6152 4891 1881 177 38 25 chr6 87823408 87823775 -101455779 + MSTB1 LTR MaLR 1 372 -60 482 112 76 0 chr6 87823778 87824029 -101455525 + (TA)n Simple_repeat Simple_repeat 1 269 0 13844 89 4 1 chr6 87824030 87825979 -101453575 - L1P LINE L1 -1484 4662 2709 1574 101 0 0 chr6 87825979 87826197 -101453357 + L1PA7 LINE L1 5928 6154 0 341 111 19 0 chr6 87826213 87826267 -101453287 + MSTB1 LTR MaLR 378 432 0 2409 57 0 7 chr6 87826963 87827260 -101452294 - AluY SINE Alu -16 295 1 195 330 88 11 chr6 87828282 87828373 -101451181 + MER5B DNA MER1_type 8 105 -73 254 218 18 18 chr6 87828803 87828858 -101450696 - MER5B DNA MER1_type -123 55 1 519 248 22 54 chr6 87829173 87829395 -101450159 + L1M4 LINE L1 3620 3834 -2312 329 127 18 0 chr6 87829401 87829456 -101450098 - L1MCc LINE L1 -5353 1070 1015 2210 104 3 3 chr6 87829498 87829805 -101449749 - AluSp SINE Alu -6 307 1 1841 79 7 21 chr6 87830717 87830996 -101448558 - L1PA13 LINE L1 -11 6152 5878 21 0 0 0 chr6 87832459 87832480 -101447074 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr6 87832826 87832875 -101446679 + AT_rich Low_complexity Low_complexity 1 49 0 613 277 54 37 chr6 87832926 87833168 -101446386 - L1MCc LINE L1 -5397 1026 781 182 36 0 36 chr6 87833352 87833380 -101446174 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 3416 169 70 52 chr6 87833639 87834410 -101445144 + LTR1 LTR ERV1 1 785 0 16300 161 29 14 chr6 87834410 87837348 -101442206 + HUERS-P2 LTR ERV1 1 3088 0 3332 181 43 51 chr6 87837348 87838139 -101441415 + LTR1 LTR ERV1 1 785 0 263 333 51 14 chr6 87838286 87838424 -101441130 - MER5B DNA MER1_type -3 175 33 * 290 333 43 35 chr6 87838300 87838441 -101441113 + MER5A DNA MER1_type 33 174 -15 25 31 0 0 chr6 87839699 87839731 -101439823 + AT_rich Low_complexity Low_complexity 1 32 0 2258 66 0 17 chr6 87840908 87841226 -101438328 + AluY SINE Alu 1 313 0 292 306 192 10 chr6 87841677 87841870 -101437684 + MIR SINE MIR 34 261 -1 313 289 240 25 chr6 87843146 87843350 -101436204 + MIR SINE MIR 2 249 -13 68 48 0 0 chr6 87843681 87843784 -101435770 + AT_rich Low_complexity Low_complexity 1 103 0 3208 263 87 30 chr6 87844006 87845730 -101433824 + L1ME2 LINE L1 2191 3986 -2229 2453 271 110 9 chr6 87845782 87847575 -101431979 + L1ME2 LINE L1 4247 6224 -9 22 0 0 0 chr6 87847582 87847604 -101431950 + AT_rich Low_complexity Low_complexity 1 22 0 1688 189 31 25 chr6 87847717 87848076 -101431478 - MLT1A1 LTR MaLR 0 365 5 1883 158 7 3 chr6 87848710 87849001 -101430553 + AluSx SINE Alu 1 292 -20 672 279 48 10 chr6 87849152 87849360 -101430194 + MER20 DNA MER1_type 3 218 -1 1094 246 65 72 chr6 87849447 87849971 -101429583 + MLT2B1 LTR ERVL 1 520 0 8220 214 24 40 chr6 87850703 87853284 -101426270 + L1MB1 LINE L1 2959 5476 -692 2133 140 0 0 chr6 87853284 87853592 -101425962 + AluSx SINE Alu 1 308 -4 8220 214 24 40 chr6 87853592 87854275 -101425279 + L1MB1 LINE L1 5476 6168 0 27 73 0 0 chr6 87854287 87854342 -101425212 + AT_rich Low_complexity Low_complexity 1 55 0 204 125 0 0 chr6 87854980 87855012 -101424542 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 291 332 12 9 chr6 87855881 87856073 -101423481 + L1ME LINE L1 784 971 -5099 238 295 0 0 chr6 87856073 87856185 -101423369 + L1M3d LINE L1 1119 1230 -4661 6477 196 157 17 chr6 87856201 87857740 -101421814 + MER52A LTR ERV1 1 1755 0 229 302 49 25 chr6 87857740 87857985 -101421569 + L1ME LINE L1 1097 1347 -4914 350 126 58 274 chr6 87858073 87858296 -101421258 - MLT1D LTR MaLR -270 235 61 284 93 0 23 chr6 87858467 87858510 -101421044 - MER31B-int LTR ERV1 -4018 918 877 726 211 15 77 chr6 87858615 87858875 -101420679 - MER31B-int LTR ERV1 -4362 574 331 407 290 7 41 chr6 87858969 87859114 -101420440 - MER31B-int LTR ERV1 -4795 141 2 1621 159 69 94 chr6 87859142 87859289 -101420265 - MER31B LTR ERV1 0 466 317 2209 81 10 7 chr6 87859289 87859585 -101419969 - AluSp SINE Alu -16 297 1 1621 159 69 94 chr6 87859585 87859915 -101419639 - MER31B LTR ERV1 -149 317 1 191 105 53 0 chr6 87860430 87860468 -101419086 + GA-rich Low_complexity Low_complexity 2 41 0 559 316 109 25 chr6 87862155 87862513 -101417041 - L2 LINE L2 -1 3312 2925 186 71 0 0 chr6 87863579 87863607 -101415947 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 22 56 0 0 chr6 87863857 87863893 -101415661 + AT_rich Low_complexity Low_complexity 1 36 0 2820 165 19 23 chr6 87866897 87867696 -101411858 + L1MA8 LINE L1 4990 5789 -502 889 157 41 52 chr6 87867703 87867789 -101411765 + MER2 DNA MER2_type 11 96 -249 628 168 8 8 chr6 87867789 87867920 -101411634 + L1MA4A LINE L1 6167 6297 -6 889 157 41 52 chr6 87867920 87868026 -101411528 + MER2 DNA MER2_type 96 201 -144 2265 163 77 2 chr6 87868145 87868611 -101410943 + L1MA8 LINE L1 5786 6286 -5 304 294 9 9 chr6 87868621 87868737 -101410817 + L1ME1 LINE L1 6058 6162 -4 476 255 30 66 chr6 87869015 87869298 -101410256 + L1MC5 LINE L1 6692 7039 -1003 267 191 0 0 chr6 87869314 87869382 -101410172 + (TA)n Simple_repeat Simple_repeat 1 68 0 533 242 31 26 chr6 87869420 87869614 -101409940 + L1MC5 LINE L1 6976 7170 -791 29 28 0 0 chr6 87869950 87869986 -101409568 + AT_rich Low_complexity Low_complexity 1 36 0 2391 48 0 0 chr6 87870595 87870890 -101408664 - L1PA4 LINE L1 -257 5898 5604 262 0 0 0 chr6 87870890 87870923 -101408631 + L1PA3 LINE L1 6116 6148 -7 476 310 9 0 chr6 87871218 87871334 -101408220 + L2 LINE L2 3144 3260 -12 514 351 67 22 chr6 87871571 87872030 -101407524 - L2 LINE L2 -184 3129 2640 645 39 0 0 chr6 87873337 87873415 -101406139 + AluY SINE Alu 55 132 -179 315 0 0 0 chr6 87873672 87873707 -101405847 + (TG)n Simple_repeat Simple_repeat 2 36 0 254 275 80 91 chr6 87873810 87874086 -101405468 - MLT1J LTR MaLR -9 502 230 1052 208 13 26 chr6 87874954 87875180 -101404374 - MER58A DNA MER1_type -1 223 1 22 35 0 0 chr6 87876355 87876384 -101403170 + AT_rich Low_complexity Low_complexity 1 29 0 206 175 62 25 chr6 87876862 87876942 -101402612 + (TA)n Simple_repeat Simple_repeat 1 83 0 366 150 41 20 chr6 87876954 87877101 -101402453 + (TA)n Simple_repeat Simple_repeat 1 150 0 191 272 109 65 chr6 87877383 87877475 -101402079 - L2 LINE L2 -20 3252 3157 191 225 0 0 chr6 87877877 87877917 -101401637 + L3 LINE CR1 1188 1227 -350 256 299 9 9 chr6 87877979 87878086 -101401468 - MER113 DNA MER1_type? -33 488 382 322 247 96 48 chr6 87878144 87878310 -101401244 - MER113 DNA MER1_type? -238 283 110 2403 74 0 0 chr6 87878314 87878613 -101400941 + AluY SINE Alu 1 299 -12 22 35 0 0 chr6 87878977 87879006 -101400548 + AT_rich Low_complexity Low_complexity 1 29 0 374 335 40 29 chr6 87879379 87879824 -101399730 + L1ME LINE L1 4911 5360 -786 362 342 51 61 chr6 87879834 87880243 -101399311 + L1ME LINE L1 5371 5775 -387 939 322 52 18 chr6 87880392 87880777 -101398777 - LTR16C LTR ERVL -92 399 2 31 0 0 0 chr6 87880865 87880896 -101398658 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr6 87881038 87881083 -101398471 + AT_rich Low_complexity Low_complexity 1 45 0 34 65 0 0 chr6 87881116 87881178 -101398376 + AT_rich Low_complexity Low_complexity 1 62 0 244 316 57 40 chr6 87881356 87881584 -101397970 + L1ME LINE L1 5555 5786 -335 423 370 36 19 chr6 87881692 87882000 -101397554 - L2 LINE L2 -2 3311 2999 448 296 22 7 chr6 87882210 87882345 -101397209 + MIR SINE MIR 25 161 -101 1091 210 24 131 chr6 87882348 87882546 -101397008 + MLT1D LTR MaLR 2 133 -372 1208 233 56 0 chr6 87882546 87882812 -101396742 + AluJo SINE Alu 2 282 -30 1091 210 24 131 chr6 87882812 87883032 -101396522 + MLT1D LTR MaLR 133 375 -130 1963 171 25 0 chr6 87883032 87883352 -101396202 + MSTA LTR MaLR 1 328 -100 1456 166 157 15 chr6 87883352 87883689 -101395865 + MSTA LTR MaLR 1 385 -43 1950 154 128 13 chr6 87883689 87884073 -101395481 + MSTA LTR MaLR 1 428 0 6170 149 20 57 chr6 87884075 87885257 -101394297 + MSTA-int LTR MaLR 3 1141 -439 352 366 158 10 chr6 87885816 87886018 -101393536 + MIR SINE MIR 31 262 0 409 245 86 13 chr6 87887340 87887491 -101392063 + MIR SINE MIR 91 252 -10 24 32 0 0 chr6 87888447 87888478 -101391076 + AT_rich Low_complexity Low_complexity 1 31 0 5130 25 0 0 chr6 87889618 87890230 -101389324 - L1PA2 LINE L1 -1248 4898 4287 7922 11 0 0 chr6 87890231 87891486 -101388068 + L1PA2 LINE L1 4901 6155 0 1200 261 107 79 chr6 87891619 87891649 -101387905 + LTR50 LTR ERVL 13 41 -754 1592 228 20 57 chr6 87891649 87892109 -101387445 - LTR47B LTR ERVL 0 443 1 1200 261 107 79 chr6 87892109 87892837 -101386717 + LTR50 LTR ERVL 41 792 -3 378 271 0 0 chr6 87892839 87892924 -101386630 - MER5A DNA MER1_type -95 94 10 945 59 0 0 chr6 87893250 87893368 -101386186 + L1PA3 LINE L1 6029 6146 -9 2098 126 10 0 chr6 87893512 87893822 -101385732 - AluSq SINE Alu 0 313 1 1861 154 7 13 chr6 87893826 87894124 -101385430 - AluJb SINE Alu -8 304 9 1868 141 0 52 chr6 87895107 87895412 -101384142 - AluSx SINE Alu -23 289 1 4007 103 13 10 chr6 87895741 87896361 -101383193 - L1PA7 LINE L1 -2091 4055 3434 9636 81 0 1 chr6 87896361 87898529 -101381025 + L1PA7 LINE L1 4033 6170 0 485 315 93 33 chr6 87898543 87898813 -101380741 - L3 LINE CR1 -151 1426 1141 2106 108 19 16 chr6 87898954 87899261 -101380293 - AluSg SINE Alu -2 308 1 2875 68 0 0 chr6 87899578 87899945 -101379609 - L1P LINE L1 -1095 5051 4685 3654 46 0 2 chr6 87899945 87900399 -101379155 + L1PA5 LINE L1 5699 6151 -3 23 0 0 0 chr6 87900609 87900632 -101378922 + AT_rich Low_complexity Low_complexity 1 23 0 343 323 61 12 chr6 87901435 87901599 -101377955 + Charlie8 DNA MER1_type 2 173 -2244 24 32 0 0 chr6 87902674 87902705 -101376849 + AT_rich Low_complexity Low_complexity 1 31 0 181 336 172 16 chr6 87902722 87902844 -101376710 - MIR SINE MIR -62 200 60 1917 23 16 16 chr6 87902866 87903196 -101376358 - L1P2 LINE L1 -631 5524 5195 4771 41 7 0 chr6 87903196 87903778 -101375776 + L1PA4 LINE L1 5567 6152 -3 447 292 111 47 chr6 87903953 87905157 -101374397 - L1M4 LINE L1 -1967 4179 2899 1452 253 55 39 chr6 87905362 87905975 -101373579 - L1M4 LINE L1 -1202 5646 5024 1111 217 58 0 chr6 87905984 87906260 -101373294 - L1MD1 LINE L1 -7 6235 5944 1695 166 27 0 chr6 87906271 87906602 -101372952 - L1MA4A LINE L1 -6 6297 5958 5190 179 50 98 chr6 87906610 87907311 -101372243 - L1M4 LINE L1 -1825 5023 4290 7677 20 2 2 chr6 87907311 87908835 -101370719 + L1PA2 LINE L1 4632 6155 0 5190 179 50 98 chr6 87908835 87909777 -101369777 - L1M4 LINE L1 -2558 4290 3459 5337 232 39 4 chr6 87909798 87910894 -101368660 - L1M4 LINE L1 -5711 1138 4 1934 229 84 20 chr6 87910896 87911427 -101368127 - L1MD1 LINE L1 -284 5958 5463 440 61 37 12 chr6 87911427 87911509 -101368045 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 1934 229 84 20 chr6 87911509 87911899 -101367655 - L1MD1 LINE L1 -779 5463 4865 550 193 13 33 chr6 87911930 87912080 -101367474 - L1M2 LINE L1 -4818 2031 1885 * 647 254 76 60 chr6 87912055 87912555 -101366999 - L1MD1 LINE L1 -1335 5513 5006 * 1712 266 89 27 chr6 87912534 87913496 -101366058 - L1MD1 LINE L1 -2169 4679 3658 2318 243 40 48 chr6 87913530 87913741 -101365813 - L1M4 LINE L1 -1765 4381 4170 2266 77 43 13 chr6 87913741 87914041 -101365513 - AluY SINE Alu -2 309 1 2318 243 40 48 chr6 87914041 87914744 -101364810 - L1M4 LINE L1 -1976 4170 3474 2075 241 71 80 chr6 87914759 87914982 -101364572 - L1MC/D LINE L1 -743 5403 5180 1919 141 49 30 chr6 87914982 87915350 -101364204 - THE1C LTR MaLR 0 375 1 8882 145 64 11 chr6 87915350 87916850 -101362704 - THE1C-int LTR MaLR 0 1580 2 1747 150 46 40 chr6 87916851 87917224 -101362330 - THE1C LTR MaLR 0 375 1 2075 241 71 80 chr6 87917224 87917435 -101362119 - L1MC/D LINE L1 -965 5181 4970 2068 122 0 7 chr6 87917435 87917722 -101361832 - AluSc SINE Alu -24 285 1 2075 241 71 80 chr6 87917722 87918007 -101361547 - L1MC/D LINE L1 -1176 4970 4684 607 248 8 0 chr6 87918007 87918128 -101361426 - FLAM_A SINE Alu -11 122 1 2075 241 71 80 chr6 87918128 87918907 -101360647 - L1MC/D LINE L1 -1462 4684 3999 767 198 45 28 chr6 87919101 87919278 -101360276 + MER5A DNA MER1_type 8 187 -2 2255 98 46 23 chr6 87920482 87920829 -101358725 + THE1A LTR MaLR 1 355 0 13514 204 31 16 chr6 87921849 87924216 -101355338 + L1MA4 LINE L1 2 2331 -4151 195 42 0 0 chr6 87924216 87924240 -101355314 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 13514 204 31 16 chr6 87924240 87928265 -101351289 + L1MA4 LINE L1 2331 6471 -11 210 91 0 0 chr6 87928803 87928836 -101350718 + (T)n Simple_repeat Simple_repeat 1 33 0 42427 36 22 1 chr6 87928844 87934863 -101344691 - L1PA2 LINE L1 -4 6151 4 1942 267 53 10 chr6 87935890 87936561 -101342993 + L2 LINE L2 2428 3124 -189 2898 202 4 9 chr6 87939365 87939925 -101339629 + MER41D LTR ERV1 1 557 0 2522 153 9 30 chr6 87940988 87941418 -101338136 + MER61B LTR ERV1 5 425 0 759 224 38 48 chr6 87941419 87941629 -101337925 + MER61B-int LTR ERV1 2 209 -5008 4352 142 23 60 chr6 87941634 87942531 -101337023 + MER61B-int LTR ERV1 364 1213 -4004 * 21245 108 24 11 chr6 87942526 87946323 -101333231 + MER61B-int LTR ERV1 1361 5217 0 2540 159 14 7 chr6 87946323 87946745 -101332809 + MER61B LTR ERV1 1 425 0 237 180 0 0 chr6 87947048 87947098 -101332456 + (TA)n Simple_repeat Simple_repeat 2 51 0 299 347 84 18 chr6 87948156 87948323 -101331231 + LTR33 LTR ERVL 1 178 -343 208 147 0 0 chr6 87948734 87948768 -101330786 + (TA)n Simple_repeat Simple_repeat 2 35 0 321 260 29 48 chr6 87948774 87948878 -101330676 + L1MC4 LINE L1 6614 6715 -1327 2889 80 82 7 chr6 87949401 87949814 -101329740 + MLT2A1 LTR ERVL 1 444 0 266 244 34 67 chr6 87950183 87950302 -101329252 + ERVL LTR ERVL 4909 5023 -741 1060 314 69 13 chr6 87950749 87951211 -101328343 + LTR33 LTR ERVL 21 508 -13 283 346 48 61 chr6 87951987 87952215 -101327339 + MIR SINE MIR 20 244 -18 1763 177 44 136 chr6 87952284 87952850 -101326704 - MER67D LTR ERV1 0 514 1 193 284 118 49 chr6 87953063 87953165 -101326389 + MIR SINE MIR 76 184 -78 25 0 0 0 chr6 87953302 87953327 -101326227 + AT_rich Low_complexity Low_complexity 1 25 0 594 114 0 11 chr6 87955321 87955409 -101324145 + MER4A LTR ERV1 12 98 -566 1539 141 19 79 chr6 87955409 87955770 -101323784 + MER4A LTR ERV1 261 658 -6 201 39 0 0 chr6 87955776 87955802 -101323752 + (TC)n Simple_repeat Simple_repeat 2 27 0 3265 118 51 2 chr6 87955965 87956492 -101323062 - MER41A LTR ERV1 0 554 2 2017 141 0 0 chr6 87957486 87957783 -101321771 - AluSx SINE Alu -15 297 1 22 35 0 0 chr6 87958139 87958168 -101321386 + AT_rich Low_complexity Low_complexity 1 29 0 2277 252 91 13 chr6 87958973 87959521 -101320033 - MLT1E LTR MaLR -2 591 1 25 65 0 0 chr6 87959863 87959909 -101319645 + AT_rich Low_complexity Low_complexity 1 46 0 2174 117 0 7 chr6 87960497 87960795 -101318759 + AluSc SINE Alu 6 301 -8 22 35 0 0 chr6 87961371 87961400 -101318154 + AT_rich Low_complexity Low_complexity 1 29 0 188 224 0 17 chr6 87961401 87961459 -101318095 + (TATG)n Simple_repeat Simple_repeat 4 60 0 380 304 24 8 chr6 87961602 87961727 -101317827 + L2 LINE L2 3187 3313 0 268 347 40 16 chr6 87962177 87962301 -101317253 - L2 LINE L2 -12 3301 3175 23 33 0 0 chr6 87962416 87962446 -101317108 + AT_rich Low_complexity Low_complexity 1 30 0 2140 102 0 0 chr6 87962626 87962938 -101316616 + AluSc SINE Alu 1 309 0 239 299 21 124 chr6 87963654 87963848 -101315706 - MER5B DNA MER1_type -3 175 2 305 213 13 27 chr6 87964528 87964603 -101314951 + MIR3 SINE MIR 114 187 -21 2504 215 67 60 chr6 87968285 87968659 -101310895 + L1MD3 LINE L1 6485 6855 -1140 378 85 0 0 chr6 87968659 87968718 -101310836 + (CA)n Simple_repeat Simple_repeat 2 60 0 2504 215 67 60 chr6 87968718 87969188 -101310366 + L1MD3 LINE L1 6855 7320 -675 213 65 0 0 chr6 87969188 87969219 -101310335 + (CA)n Simple_repeat Simple_repeat 1 31 0 2504 215 67 60 chr6 87969219 87969785 -101309769 + L1MD3 LINE L1 7320 7964 -31 15117 203 40 24 chr6 87969798 87970762 -101308792 + L1PA16 LINE L1 1 948 -5921 345 24 0 0 chr6 87970762 87970804 -101308750 + (TG)n Simple_repeat Simple_repeat 2 43 0 15117 203 40 24 chr6 87970804 87973239 -101306315 + L1PA16 LINE L1 948 3342 -3527 2800 16 0 0 chr6 87973239 87973546 -101306008 + AluYa5 SINE Alu 1 307 -4 15117 203 40 24 chr6 87973546 87975776 -101303778 + L1PA16 LINE L1 3342 5742 -1127 2396 93 3 0 chr6 87975776 87976076 -101303478 + AluSp SINE Alu 1 301 -12 15117 203 40 24 chr6 87976076 87977214 -101302340 + L1PA16 LINE L1 5742 6860 -9 45 45 0 0 chr6 87977214 87977280 -101302274 + AT_rich Low_complexity Low_complexity 1 66 0 2096 136 0 0 chr6 87977282 87977577 -101301977 + AluSq SINE Alu 3 297 -16 490 268 78 0 chr6 87977621 87977800 -101301754 + MIR SINE MIR 70 262 0 708 235 62 17 chr6 87977939 87978118 -101301436 + MER20 DNA MER1_type 33 219 0 33 43 0 0 chr6 87979430 87979477 -101300077 + AT_rich Low_complexity Low_complexity 1 47 0 234 0 0 0 chr6 87979796 87979822 -101299732 + (GA)n Simple_repeat Simple_repeat 1 26 0 243 305 67 0 chr6 87980173 87980278 -101299276 + L1MEc LINE L1 1116 1227 -5494 314 301 58 62 chr6 87980282 87980508 -101299046 + L1MEc LINE L1 1186 1410 -5120 371 287 93 62 chr6 87980641 87980962 -101298592 + L1MEc LINE L1 2287 2617 -3923 340 299 22 11 chr6 87980984 87981255 -101298299 + L1MEc LINE L1 3475 3748 -2792 22 56 0 0 chr6 87981377 87981413 -101298141 + AT_rich Low_complexity Low_complexity 1 36 0 413 271 132 28 chr6 87981535 87981786 -101297768 + L1MEc LINE L1 3891 4167 -2373 764 264 108 34 chr6 87981790 87982199 -101297355 + L1MEc LINE L1 4210 4648 -1892 229 257 92 92 chr6 88034233 88034505 -101245049 - L1ME LINE L1 -590 5580 5309 282 330 19 5 chr6 88034922 88035137 -101244417 - L1ME LINE L1 -1299 4847 4630 1978 124 3 41 chr6 88035246 88035561 -101243993 + AluSq SINE Alu 1 303 -10 25 31 0 0 chr6 88035605 88035637 -101243917 + AT_rich Low_complexity Low_complexity 1 32 0 911 104 8 0 chr6 88035772 88035897 -101243657 - THE1C LTR MaLR 0 364 239 939 121 8 0 chr6 88035897 88036029 -101243525 - THE1C LTR MaLR -242 133 1 23 68 0 0 chr6 88036210 88036254 -101243300 + AT_rich Low_complexity Low_complexity 1 44 0 331 274 10 39 chr6 88036885 88036987 -101242567 - L2 LINE L2 0 3272 3174 206 31 0 31 chr6 88037283 88037315 -101242239 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 233 105 228 0 chr6 88037549 88037606 -101241948 + L1MC4 LINE L1 6650 6719 -1323 275 199 81 0 chr6 88037629 88037790 -101241764 + (TA)n Simple_repeat Simple_repeat 1 174 0 289 378 54 15 chr6 88038030 88038234 -101241320 - MIR SINE MIR -43 219 8 182 61 0 30 chr6 88038551 88038584 -101240970 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 551 274 123 79 chr6 88039679 88039809 -101239745 - L2 LINE L2 -2 3311 3188 1709 146 84 34 chr6 88039809 88040166 -101239388 + THE1C LTR MaLR 1 375 0 551 274 123 79 chr6 88040166 88040466 -101239088 - L2 LINE L2 -125 3188 2862 208 226 12 12 chr6 88042620 88042704 -101236850 + (TA)n Simple_repeat Simple_repeat 2 85 0 1310 184 20 35 chr6 88042885 88043140 -101236414 + MLT1A1 LTR MaLR 4 254 -111 817 216 31 26 chr6 88043173 88043367 -101236187 + MLT1A1 LTR MaLR 171 365 0 27 49 0 0 chr6 88043405 88043446 -101236108 + AT_rich Low_complexity Low_complexity 1 41 0 434 329 7 0 chr6 88043468 88043623 -101235931 + L1MC5 LINE L1 6636 6791 -1170 2927 130 11 28 chr6 88043669 88044130 -101235424 + MLT2A2 LTR ERVL 1 453 0 13551 79 8 0 chr6 88044130 88045875 -101233679 + HERVL-A2 LTR ERVL 1 1759 -3895 401 74 56 0 chr6 88045863 88045917 -101233637 + HERVL-A1 LTR ERVL 3002 3058 -2596 * 9890 101 14 1 chr6 88045917 88047258 -101232296 + HERVL-A1 LTR ERVL 1688 3046 -2608 2544 104 15 40 chr6 88047247 88047652 -101231902 + HERVL-A1 LTR ERVL 5005 5399 -255 * 1777 92 15 0 chr6 88047856 88048116 -101231438 + HERVL-A1 LTR ERVL 5391 5654 0 2740 79 14 52 chr6 88048116 88048536 -101231018 + MLT2A1 LTR ERVL 1 404 -40 231 179 26 13 chr6 88048550 88048628 -101230926 + (TA)n Simple_repeat Simple_repeat 1 79 0 313 100 35 0 chr6 88048628 88048685 -101230869 + MLT2A2 LTR ERVL 403 453 0 1417 218 73 126 chr6 88048686 88049833 -101229721 + L1MC5 LINE L1 6842 7927 -34 593 165 0 0 chr6 88049935 88050032 -101229522 + FRAM SINE Alu 16 112 -64 258 284 57 23 chr6 88050174 88050262 -101229292 + L2 LINE L2 3173 3263 -9 329 379 23 15 chr6 88051136 88051268 -101228286 + L2 LINE L2 3139 3271 -1 564 236 102 53 chr6 88051574 88051799 -101227755 - L2 LINE L2 -3 3310 3075 258 266 145 16 chr6 88051838 88051962 -101227592 - L2 LINE L2 -3132 182 43 2384 77 0 10 chr6 88052280 88052577 -101226977 + AluSg SINE Alu 1 294 -16 1858 115 236 6 chr6 88053442 88053790 -101225764 - MSTA LTR MaLR 0 428 1 215 154 26 0 chr6 88053810 88053849 -101225705 + CT-rich Low_complexity Low_complexity 1 40 0 416 296 168 27 chr6 88054554 88054774 -101224780 - MIR SINE MIR -10 252 2 304 217 35 175 chr6 88056823 88056966 -101222588 - L2 LINE L2 0 3313 3191 197 292 46 0 chr6 88057296 88057361 -101222193 + L2 LINE L2 2444 2511 -803 343 338 14 28 chr6 88057558 88057700 -101221854 + MIR SINE MIR 52 191 -71 418 315 104 31 chr6 88059638 88059927 -101219627 - L2 LINE L2 -10 3303 2994 25 0 0 0 chr6 88059932 88059957 -101219597 + AT_rich Low_complexity Low_complexity 1 25 0 301 350 0 0 chr6 88059960 88060040 -101219514 + L2 LINE L2 3160 3239 -33 921 171 18 161 chr6 88060146 88060426 -101219128 - MLT1B LTR MaLR -1 389 150 41519 62 1 1 chr6 88060430 88066566 -101212988 + L1PA5 LINE L1 13 6149 -5 762 197 66 7 chr6 88066566 88066718 -101212836 - MLT1B LTR MaLR -229 161 1 1801 264 28 11 chr6 88066731 88067189 -101212365 - MLT1B-int LTR MaLR -12 1723 1258 695 262 62 11 chr6 88067400 88067672 -101211882 - MLT1B-int LTR MaLR -487 884 508 1575 164 30 30 chr6 88067676 88068101 -101211453 - AluJo SINE Alu 0 425 1 295 279 4 0 chr6 88068107 88068189 -101211365 - MLT1B-int LTR MaLR -839 532 433 968 225 11 2 chr6 88068190 88068488 -101211066 - MLT1B-int LTR MaLR -1175 196 2 1168 216 84 74 chr6 88068494 88068873 -101210681 - MLT1B LTR MaLR -7 383 1 324 357 94 25 chr6 88069434 88069669 -101209885 + MIR SINE MIR 12 262 0 240 35 0 0 chr6 88070570 88070599 -101208955 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 315 85 0 0 chr6 88070598 88070645 -101208909 + (CA)n Simple_repeat Simple_repeat 1 47 0 232 329 25 0 chr6 88071147 88071226 -101208328 - L2 LINE L2 -2 3311 3231 586 267 102 19 chr6 88071400 88071606 -101207948 - MIR SINE MIR -3 259 37 1856 129 36 0 chr6 88071636 88071914 -101207640 - AluSx SINE Alu -24 288 1 25 0 0 0 chr6 88073152 88073177 -101206377 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr6 88073217 88073242 -101206312 + AT_rich Low_complexity Low_complexity 1 25 0 218 32 32 0 chr6 88073286 88073317 -101206237 + (TA)n Simple_repeat Simple_repeat 1 32 0 2155 180 37 33 chr6 88073317 88073759 -101205795 - L1MA8 LINE L1 -76 6215 5768 2346 56 0 3 chr6 88073759 88074095 -101205459 - AluY SINE Alu 0 335 1 2155 180 37 33 chr6 88074095 88074139 -101205415 - L1MA8 LINE L1 -523 5768 5726 327 345 45 0 chr6 88074164 88074274 -101205280 - L2 LINE L2 0 3272 3158 506 305 25 35 chr6 88075105 88075302 -101204252 - MIR SINE MIR -60 202 8 1541 168 55 50 chr6 88075670 88076033 -101203521 - MLT1A1 LTR MaLR 0 365 1 663 273 67 16 chr6 88076331 88076525 -101203029 - MIR SINE MIR -56 206 3 2347 142 61 7 chr6 88077221 88077631 -101201923 + MSTB1 LTR MaLR 1 432 0 2384 168 68 42 chr6 88078111 88078555 -101200999 + MLT2B2 LTR ERVL 2 462 -53 306 50 0 0 chr6 88078555 88078595 -101200959 + (CA)n Simple_repeat Simple_repeat 1 40 0 2384 168 68 42 chr6 88078595 88078651 -101200903 + MLT2B2 LTR ERVL 462 515 0 219 337 10 30 chr6 88079280 88079381 -101200173 + MER5B DNA MER1_type 2 100 -78 543 43 0 0 chr6 88079975 88080045 -101199509 + (TA)n Simple_repeat Simple_repeat 2 71 0 186 370 16 31 chr6 88080384 88080511 -101199043 - L2 LINE L2 -939 2375 2251 209 229 16 0 chr6 88080919 88080980 -101198574 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 25 75 0 0 chr6 88081260 88081313 -101198241 + AT_rich Low_complexity Low_complexity 1 53 0 1196 325 106 65 chr6 88081641 88083233 -101196321 + L2 LINE L2 1315 2970 -344 2445 122 8 24 chr6 88083395 88083765 -101195789 + THE1B LTR MaLR 1 364 0 876 94 16 0 chr6 88083765 88083892 -101195662 + THE1B-int LTR MaLR 1 129 -1451 11612 98 3 1 chr6 88083892 88085436 -101194118 + THE1B-int LTR MaLR 33 1580 0 2378 128 11 22 chr6 88085436 88085804 -101193750 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr6 88085999 88086020 -101193534 + AT_rich Low_complexity Low_complexity 1 21 0 267 263 75 0 chr6 88086672 88086805 -101192749 - L1MC4 LINE L1 -2 8040 7898 207 0 0 0 chr6 88087246 88087269 -101192285 + (T)n Simple_repeat Simple_repeat 1 23 0 882 259 38 86 chr6 88087790 88088457 -101191097 + L1ME LINE L1 766 1398 -4981 1055 122 0 0 chr6 88088476 88088632 -101190922 - L1PA13 LINE L1 -11 6152 5997 12431 183 30 10 chr6 88088632 88091149 -101188405 + L1P LINE L1 2448 5015 -1131 2241 184 248 76 chr6 88091168 88092021 -101187533 - LTR28 LTR ERV1 0 1020 30 971 159 0 0 chr6 88092022 88092198 -101187356 + L1P LINE L1 5026 5201 -945 594 280 139 27 chr6 88092222 88092603 -101186951 + L1ME LINE L1 1328 1665 -4717 1999 113 41 0 chr6 88092603 88092894 -101186660 + AluSx SINE Alu 1 303 -9 594 280 139 27 chr6 88092894 88093080 -101186474 + L1ME LINE L1 1665 2088 -4294 2431 276 84 27 chr6 88093084 88093361 -101186193 - L1MC4 LINE L1 -217 7825 7565 2335 78 0 0 chr6 88093361 88093671 -101185883 - AluSx SINE Alu 0 310 1 2431 276 84 27 chr6 88093671 88094463 -101185091 - L1MC4 LINE L1 -477 7565 6694 1394 277 106 35 chr6 88094533 88095338 -101184216 - L1MC4a LINE L1 -1487 6321 5460 375 227 48 78 chr6 88095345 88095605 -101183949 - L1MC4a LINE L1 -747 5399 5153 224 291 19 0 chr6 88095630 88095733 -101183821 + (TA)n Simple_repeat Simple_repeat 1 105 0 354 318 54 18 chr6 88095772 88096049 -101183505 - L1MC4a LINE L1 -1038 5108 4822 1281 225 20 34 chr6 88096180 88096535 -101183019 - L1MA9 LINE L1 -48 6264 5915 774 191 27 6 chr6 88096528 88096711 -101182843 + L1 LINE L1 3604 3790 -2356 * 2729 219 62 18 chr6 88096719 88097506 -101182048 + L1 LINE L1 2847 3668 -2478 337 260 150 12 chr6 88097592 88097765 -101181789 - L1MC4a LINE L1 -1565 4581 4385 2561 229 58 43 chr6 88097798 88098232 -101181322 - L1MC3 LINE L1 -318 7467 7014 186 103 0 0 chr6 88098232 88098261 -101181293 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2561 229 58 43 chr6 88098261 88098639 -101180915 - L1MC3 LINE L1 -771 7014 6643 302 214 34 45 chr6 88100892 88100981 -101178573 - L1MC4 LINE L1 -1339 6703 6616 225 132 0 0 chr6 88101002 88101040 -101178514 + (TA)n Simple_repeat Simple_repeat 2 39 0 29 0 0 0 chr6 88101066 88101095 -101178459 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr6 88101684 88101722 -101177832 + AT_rich Low_complexity Low_complexity 1 38 0 770 202 92 0 chr6 88103649 88103822 -101175732 - MER5A DNA MER1_type 0 189 1 655 266 46 78 chr6 88104303 88104841 -101174713 + L1MC5 LINE L1 6739 7256 -733 326 264 126 47 chr6 88104997 88105338 -101174216 + L1MC5 LINE L1 7314 7681 -280 4756 169 14 28 chr6 88105395 88106351 -101173203 - L1MA8 LINE L1 -3 6288 5347 4375 211 29 76 chr6 88106351 88106462 -101173092 - Charlie1a DNA MER1_type -1365 1396 1281 1519 199 21 0 chr6 88106462 88106743 -101172811 + AluJo SINE Alu 1 287 -25 4375 211 29 76 chr6 88106743 88107201 -101172353 - Charlie1a DNA MER1_type -1480 1281 803 927 121 42 0 chr6 88107201 88107366 -101172188 - L1MA3 LINE L1 0 6305 6134 4375 211 29 76 chr6 88107366 88108192 -101171362 - Charlie1a DNA MER1_type -1958 803 66 25 31 0 0 chr6 88108644 88108676 -101170878 + AT_rich Low_complexity Low_complexity 1 32 0 1163 167 5 20 chr6 88108676 88108874 -101170680 + AluJb SINE Alu 82 276 -36 180 0 0 0 chr6 88108879 88108899 -101170655 + (TAA)n Simple_repeat Simple_repeat 2 21 0 214 385 46 39 chr6 88109161 88109291 -101170263 + L2 LINE L2 3138 3268 -4 232 348 147 31 chr6 88109581 88110058 -101169496 + L2 LINE L2 2187 2718 -596 6610 153 27 8 chr6 88110790 88111996 -101167558 + Tigger3b DNA MER2_type 1 1230 -1 2092 95 0 0 chr6 88112186 88112459 -101167095 - AluSg SINE Alu -37 273 1 375 22 0 0 chr6 88112493 88112539 -101167015 + AluY SINE Alu 84 129 -172 2932 78 16 3 chr6 88112648 88113032 -101166522 - MLT2A2 LTR ERVL -64 389 1 9993 72 16 0 chr6 88113038 88114328 -101165226 - HERVL-A2-A2 LTR ERVL -7 5647 4337 * 14068 84 15 4 chr6 88114321 88116187 -101163367 - HERVL-A2-A2 LTR ERVL -1634 4020 2135 * 14951 87 1 2 chr6 88116178 88118154 -101161400 - HERVL-A2-A2 LTR ERVL -3680 1974 1 3161 107 18 5 chr6 88118154 88118601 -101160953 - MLT2A2 LTR ERVL 0 453 1 22 70 0 0 chr6 88118814 88118857 -101160697 + AT_rich Low_complexity Low_complexity 1 43 0 30 0 0 0 chr6 88119026 88119056 -101160498 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr6 88119910 88119942 -101159612 + AT_rich Low_complexity Low_complexity 1 32 0 383 297 79 24 chr6 88120395 88120560 -101158994 - MIR3 SINE MIR -1 207 34 23 0 0 0 chr6 88120567 88120590 -101158964 + AT_rich Low_complexity Low_complexity 1 23 0 563 98 61 0 chr6 88120914 88121077 -101158477 + (TA)n Simple_repeat Simple_repeat 2 174 0 235 159 0 95 chr6 88121077 88121105 -101158449 + MLT2B1 LTR ERVL 464 493 -27 237 33 0 0 chr6 88121105 88121135 -101158419 + (TG)n Simple_repeat Simple_repeat 2 31 0 * 267 31 0 0 chr6 88121134 88121166 -101158388 + (TA)n Simple_repeat Simple_repeat 1 32 0 235 159 0 95 chr6 88121135 88121200 -101158354 + MLT2B1 LTR ERVL 493 520 0 315 227 15 0 chr6 88121271 88121337 -101158217 - L2 LINE L2 0 3313 3247 846 325 99 29 chr6 88121435 88121819 -101157735 - LTR16C LTR ERVL 0 491 81 24 0 0 0 chr6 88123543 88123567 -101155987 + AT_rich Low_complexity Low_complexity 1 24 0 8447 114 29 7 chr6 88123592 88124408 -101155146 - HSMAR1 DNA Mariner -1 1286 432 1742 122 6 110 chr6 88124408 88124753 -101154801 - AluSp SINE Alu -4 309 1 8447 114 29 7 chr6 88124753 88125195 -101154359 - HSMAR1 DNA Mariner -855 432 1 330 80 0 0 chr6 88125376 88125426 -101154128 + (TG)n Simple_repeat Simple_repeat 1 50 0 1048 181 29 0 chr6 88125426 88125631 -101153923 - L1MA9 LINE L1 -161 6151 5941 436 128 47 35 chr6 88125631 88125717 -101153837 + L1MA9 LINE L1 6165 6251 -61 462 284 75 0 chr6 88125814 88125948 -101153606 - MLT1L LTR MaLR -47 568 425 34 0 0 0 chr6 88126143 88126177 -101153377 + AT_rich Low_complexity Low_complexity 1 34 0 509 307 67 41 chr6 88126210 88126469 -101153085 + L1ME LINE L1 5184 5435 -735 1585 185 29 52 chr6 88126469 88126852 -101152702 + MLT1A2 LTR MaLR 1 374 0 509 307 67 41 chr6 88126852 88127178 -101152376 + L1ME LINE L1 5435 5787 -383 3206 236 58 24 chr6 88127318 88128620 -101150934 - L1ME1 LINE L1 -8 6158 4810 1472 193 10 39 chr6 88128639 88128945 -101150609 - AluJo SINE Alu -13 299 3 474 250 117 21 chr6 88129150 88129338 -101150216 + LTR50 LTR ERVL 14 219 -576 313 244 209 4 chr6 88129428 88129653 -101149901 + LTR50 LTR ERVL 499 769 -26 226 127 0 36 chr6 88130444 88130499 -101149055 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 194 300 172 47 chr6 88132131 88132428 -101147126 + L3b LINE CR1 1161 1494 -89 541 164 57 0 chr6 88132723 88132845 -101146709 + L1MA9 LINE L1 6184 6312 0 2394 66 0 0 chr6 88133802 88134103 -101145451 - AluY SINE Alu -10 301 1 26 30 0 0 chr6 88134267 88134300 -101145254 + AT_rich Low_complexity Low_complexity 1 33 0 261 377 27 20 chr6 88135661 88135807 -101143747 + L2 LINE L2 2937 3083 -189 845 214 33 9 chr6 88135924 88136134 -101143420 - MLT1C LTR MaLR -2 465 251 1153 223 161 68 chr6 88136137 88136849 -101142705 - LTR48B LTR ERV1 -1 643 1 764 264 50 58 chr6 88136870 88137128 -101142426 - MLT1C LTR MaLR -134 256 1 1756 224 44 46 chr6 88137188 88137643 -101141911 - LTR32 LTR ERVL -3 468 15 719 242 16 16 chr6 88137822 88138004 -101141550 + L1MEc LINE L1 311 492 -5904 596 204 116 36 chr6 88137984 88138209 -101141345 + L1MEc LINE L1 1660 1902 -4494 * 1683 194 0 25 chr6 88138444 88138764 -101140790 - AluSx SINE Alu 0 312 1 236 292 0 15 chr6 88139147 88139212 -101140342 + GA-rich Low_complexity Low_complexity 3 66 0 25 0 0 0 chr6 88139394 88139419 -101140135 + AT_rich Low_complexity Low_complexity 1 25 0 192 284 161 72 chr6 88140297 88140533 -101139021 + L2 LINE L2 2828 3084 -188 301 252 0 70 chr6 88140588 88140703 -101138851 - L1P LINE L1 -2539 3607 3501 215 376 0 0 chr6 88141107 88141192 -101138362 + L2 LINE L2 3229 3313 0 279 231 75 127 chr6 88141268 88141402 -101138152 - L2 LINE L2 0 3313 3187 1193 226 4 31 chr6 88141495 88141752 -101137802 + MLT1A1 LTR MaLR 116 365 0 198 103 0 0 chr6 88141772 88141801 -101137753 + (TTCTCC)n Simple_repeat Simple_repeat 3 31 0 846 299 85 52 chr6 88141801 88142520 -101137034 + L2 LINE L2 1985 2727 -587 2320 63 0 0 chr6 88142600 88142899 -101136655 + L1P LINE L1 1845 2143 -4003 347 320 14 55 chr6 88143097 88143316 -101136238 - L2 LINE L2 0 3313 3104 810 68 0 0 chr6 88143347 88143450 -101136104 + L1PA5 LINE L1 6045 6147 -7 26 64 0 0 chr6 88143450 88143497 -101136057 + AT_rich Low_complexity Low_complexity 1 47 0 43 108 0 0 chr6 88143640 88143816 -101135738 + AT_rich Low_complexity Low_complexity 1 176 0 28 109 0 0 chr6 88144298 88144417 -101135137 + AT_rich Low_complexity Low_complexity 1 119 0 180 346 24 24 chr6 88144423 88144550 -101135004 - L2 LINE L2 -615 2699 2573 28 29 0 0 chr6 88144950 88144985 -101134569 + AT_rich Low_complexity Low_complexity 1 35 0 442 307 80 0 chr6 88146232 88146369 -101133185 - MIR3 SINE MIR -7 201 54 439 345 171 29 chr6 88147883 88148268 -101131286 + MLT1K LTR MaLR 126 565 -23 23 0 0 0 chr6 88148952 88148975 -101130579 + AT_rich Low_complexity Low_complexity 1 23 0 395 68 17 0 chr6 88149186 88149245 -101130309 + (TC)n Simple_repeat Simple_repeat 1 60 0 1481 258 106 42 chr6 88149489 88149687 -101129867 - L2 LINE L2 -2 3311 3127 1742 178 35 68 chr6 88149687 88150113 -101129441 + MLT2D LTR ERVL 1 412 -2 1481 258 106 42 chr6 88150113 88150163 -101129391 - L2 LINE L2 -186 3127 3082 2144 50 0 0 chr6 88150163 88150425 -101129129 - L1PA3 LINE L1 0 6155 5894 1481 258 106 42 chr6 88150425 88151139 -101128415 - L2 LINE L2 -231 3082 2262 760 290 28 27 chr6 88151174 88151601 -101127953 + MER20B DNA MER1_type 7 499 -284 1893 105 40 4 chr6 88151950 88152226 -101127328 - AluSx SINE Alu -16 296 11 619 231 87 26 chr6 88152539 88152768 -101126786 + MER20B DNA MER1_type 536 778 -5 1521 212 46 39 chr6 88152791 88153202 -101126352 - MLT2D LTR ERVL 0 414 1 2812 132 16 19 chr6 88153693 88154208 -101125346 - L1MA8 LINE L1 -19 7293 6781 12788 34 10 0 chr6 88154236 88156559 -101122995 - L1PA4 LINE L1 -3 6152 3813 1123 128 41 15 chr6 88156559 88156754 -101122800 - L1MA8 LINE L1 -561 6751 6552 571 128 128 0 chr6 88156733 88156827 -101122727 - L1MA8 LINE L1 -2526 4641 4536 * 1038 278 47 24 chr6 88156849 88157360 -101122194 - L1MA8 LINE L1 -4286 2882 2360 1114 29 0 7 chr6 88157375 88157513 -101122041 - L1PA5 LINE L1 -3 6151 6015 1107 60 24 42 chr6 88157514 88157680 -101121874 + L1PA4 LINE L1 5886 6048 -107 * 1251 292 32 11 chr6 88157665 88158378 -101121176 - L1MA8 LINE L1 -4728 2370 1619 935 240 119 50 chr6 88158712 88159049 -101120505 + MLT1A1 LTR MaLR 6 365 0 29 60 0 0 chr6 88159099 88159149 -101120405 + AT_rich Low_complexity Low_complexity 1 50 0 38 61 0 0 chr6 88159273 88159339 -101120215 + AT_rich Low_complexity Low_complexity 1 66 0 569 271 106 59 chr6 88159880 88160153 -101119401 + MLT1G LTR MaLR 1 286 -304 233 247 156 0 chr6 88160226 88160303 -101119251 + MLT1G1 LTR MaLR 507 595 0 1047 184 10 0 chr6 88160814 88161015 -101118539 - Tigger5 DNA MER2_type 0 2323 2121 422 269 9 0 chr6 88161034 88161142 -101118412 - Tigger5 DNA MER2_type -2214 109 1 1118 139 0 0 chr6 88161347 88161512 -101118042 - AluSg/x SINE Alu -11 299 135 315 240 48 19 chr6 88161585 88161689 -101117865 - L1ME LINE L1 -5901 169 63 1506 136 30 0 chr6 88161690 88161926 -101117628 + L1PB3 LINE L1 5905 6147 -7 188 149 21 0 chr6 88161926 88161973 -101117581 + (TA)n Simple_repeat Simple_repeat 1 48 0 269 250 0 0 chr6 88162138 88162194 -101117360 + L2 LINE L2 3214 3269 -3 33 25 0 0 chr6 88163381 88163421 -101116133 + AT_rich Low_complexity Low_complexity 1 40 0 2353 78 0 0 chr6 88163811 88164104 -101115450 - AluY SINE Alu -18 293 1 256 135 39 0 chr6 88164117 88164169 -101115385 - MADE1 DNA Mariner 0 80 27 * 2054 143 140 5 chr6 88164157 88164549 -101115005 - MER31A LTR ERV1 -36 449 5 387 0 0 0 chr6 88165924 88165967 -101113587 + (TG)n Simple_repeat Simple_repeat 2 44 0 284 264 0 11 chr6 88165969 88166056 -101113498 + GA-rich Low_complexity Low_complexity 1 86 0 582 205 34 0 chr6 88166503 88166620 -101112934 + FLAM_C SINE Alu 3 123 -20 1402 129 173 12 chr6 88166679 88166934 -101112620 - AluSc SINE Alu -3 296 1 281 291 39 47 chr6 88167722 88167772 -101111782 - MIR3 SINE MIR -35 173 124 222 37 0 0 chr6 88167772 88167799 -101111755 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 281 291 39 47 chr6 88167799 88167875 -101111679 - MIR3 SINE MIR -84 124 48 29 28 0 0 chr6 88168226 88168262 -101111292 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 88168521 88168543 -101111011 + AT_rich Low_complexity Low_complexity 1 22 0 1989 131 44 33 chr6 88168888 88169248 -101110306 + THE1B LTR MaLR 1 364 0 183 245 0 38 chr6 88170507 88170560 -101108994 - L2 LINE L2 -2 3311 3261 245 0 0 70 chr6 88170734 88170777 -101108777 + L1PA6 LINE L1 6115 6154 0 2123 114 0 7 chr6 88171021 88171319 -101108235 - AluSx SINE Alu -16 296 1 351 0 0 0 chr6 88173140 88173179 -101106375 + (TAA)n Simple_repeat Simple_repeat 2 40 0 589 336 94 55 chr6 88173539 88174066 -101105488 + HAL1 LINE L1 826 1392 -1115 1804 164 24 0 chr6 88174066 88174353 -101105201 + AluSx SINE Alu 3 296 -16 589 336 94 55 chr6 88174353 88174558 -101104996 + HAL1 LINE L1 1392 1587 -920 26 50 0 0 chr6 88174754 88174794 -101104760 + AT_rich Low_complexity Low_complexity 1 40 0 374 287 90 75 chr6 88175019 88175353 -101104201 + L1M4 LINE L1 2257 2595 -3551 239 214 0 29 chr6 88175383 88175453 -101104101 + L1M4 LINE L1 2867 2934 -3212 501 179 0 0 chr6 88175459 88175537 -101104017 + FRAM/FAM SINE Alu 6 83 -93 218 368 0 0 chr6 88175711 88175806 -101103748 + MIR3 SINE MIR 111 205 -3 22 35 0 0 chr6 88175806 88175835 -101103719 + AT_rich Low_complexity Low_complexity 1 29 0 953 254 5 10 chr6 88177028 88177233 -101102321 + MER63A DNA MER1_type 2 205 -5 358 306 221 36 chr6 88179159 88179466 -101100088 + MLT1H LTR MaLR 1 364 -185 276 366 12 25 chr6 88180833 88180994 -101098560 - L2 LINE L2 0 3313 3155 23 0 0 0 chr6 88181142 88181165 -101098389 + AT_rich Low_complexity Low_complexity 1 23 0 1602 155 74 0 chr6 88181745 88182029 -101097525 + AluJb SINE Alu 1 305 -7 195 365 70 9 chr6 88183602 88183717 -101095837 - L2 LINE L2 0 3272 3151 263 381 10 0 chr6 88183821 88183918 -101095636 - L2 LINE L2 -9 3304 3207 248 320 88 32 chr6 88184260 88184385 -101095169 - L2 LINE L2 -4 3268 3137 23 33 0 0 chr6 88184406 88184436 -101095118 + AT_rich Low_complexity Low_complexity 1 30 0 31 58 0 0 chr6 88185479 88185531 -101094023 + AT_rich Low_complexity Low_complexity 1 52 0 687 239 89 38 chr6 88186348 88186561 -101092993 - MLT1H LTR MaLR -322 227 4 2556 219 75 29 chr6 88186690 88187348 -101092206 - MER76 LTR ERV 0 688 1 2476 246 54 37 chr6 88187445 88188558 -101090996 - L1ME1 LINE L1 -128 6038 4890 315 0 0 0 chr6 88188558 88188593 -101090961 + (CA)n Simple_repeat Simple_repeat 2 36 0 2476 246 54 37 chr6 88188593 88188957 -101090597 - L1ME1 LINE L1 -1276 4890 4534 931 315 48 21 chr6 88189148 88189639 -101089915 - MLT1H LTR MaLR -22 527 24 1899 170 3 0 chr6 88189830 88190165 -101089389 - AluJb SINE Alu 0 336 1 2237 110 21 0 chr6 88190178 88190506 -101089048 - L1PA8A LINE L1 -2 6129 5795 2434 74 0 0 chr6 88191217 88191516 -101088038 + AluY SINE Alu 1 299 -12 24 53 0 0 chr6 88191608 88191646 -101087908 + AT_rich Low_complexity Low_complexity 1 38 0 194 340 32 21 chr6 88192796 88192890 -101086664 + MER5A DNA MER1_type 92 186 -3 13787 174 26 21 chr6 88193156 88193846 -101085708 - L1MA2 LINE L1 0 7723 7038 180 0 0 0 chr6 88193846 88193866 -101085688 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2007 132 4 0 chr6 88193867 88194148 -101085406 - AluSx SINE Alu -30 282 1 13787 174 26 21 chr6 88194148 88197892 -101081662 - L1MA2 LINE L1 -684 7039 3267 3474 200 60 5 chr6 88197908 88198573 -101080981 - L1MA2 LINE L1 -6848 717 16 213 357 24 0 chr6 88198583 88198667 -101080887 + L2 LINE L2 3224 3309 -4 895 200 11 11 chr6 88199055 88199230 -101080324 - AluJb SINE Alu -4 308 134 1713 178 3 17 chr6 88199648 88199935 -101079619 + AluSx SINE Alu 1 283 -29 193 40 0 0 chr6 88199935 88199960 -101079594 + (CAA)n Simple_repeat Simple_repeat 2 180 0 2235 75 0 0 chr6 88200540 88200819 -101078735 - AluY SINE Alu -12 299 21 327 248 137 0 chr6 88200910 88201027 -101078527 + L1MEc LINE L1 37 169 -6227 274 340 140 20 chr6 88202018 88202168 -101077386 + MIR3 SINE MIR 30 197 -11 451 270 87 30 chr6 88203130 88203677 -101075877 - L1MC/D LINE L1 -748 5398 4918 464 310 128 42 chr6 88204092 88204570 -101074984 - L1MC/D LINE L1 -1714 4432 3914 530 339 131 24 chr6 88205288 88205669 -101073885 - L2 LINE L2 -6 3307 2886 26 30 0 0 chr6 88206130 88206163 -101073391 + AT_rich Low_complexity Low_complexity 1 33 0 4480 28 2 0 chr6 88206791 88207325 -101072229 - L1PA4 LINE L1 -342 5813 5279 2491 36 0 0 chr6 88207325 88207686 -101071868 + L1PA4 LINE L1 5844 6206 0 389 341 104 14 chr6 88208015 88208235 -101071319 - MIR SINE MIR -17 245 6 278 299 83 18 chr6 88208921 88209138 -101070416 + L1ME3A LINE L1 4695 4925 -1221 552 183 0 0 chr6 88209167 88209260 -101070294 - L1MC/D LINE L1 -804 5540 5448 1846 67 0 0 chr6 88209263 88209488 -101070066 - AluY SINE Alu -1 310 86 538 260 104 11 chr6 88209511 88209734 -101069820 - L1ME LINE L1 -5823 247 2 438 333 6 0 chr6 88209737 88209893 -101069661 + L1ME3A LINE L1 5706 5862 -308 943 233 22 40 chr6 88210008 88210236 -101069318 - MER58A DNA MER1_type 0 224 1 21 36 0 0 chr6 88210297 88210325 -101069229 + AT_rich Low_complexity Low_complexity 1 28 0 270 356 40 7 chr6 88211016 88211165 -101068389 + L2 LINE L2 3159 3312 -1 23 33 0 0 chr6 88212681 88212711 -101066843 + AT_rich Low_complexity Low_complexity 1 30 0 30 59 0 0 chr6 88212914 88212965 -101066589 + AT_rich Low_complexity Low_complexity 1 51 0 49 32 0 0 chr6 88213755 88213818 -101065736 + AT_rich Low_complexity Low_complexity 1 63 0 423 0 0 0 chr6 88213818 88213865 -101065689 + (TG)n Simple_repeat Simple_repeat 2 48 0 1873 355 70 38 chr6 88214653 88216335 -101063219 + HERVL LTR ERVL 1839 3574 -2190 723 293 132 37 chr6 88216586 88217342 -101062212 + HERVL LTR ERVL 3860 4736 -882 292 321 28 19 chr6 88217449 88217555 -101061999 + HERVL LTR ERVL 4892 4998 -766 277 372 7 20 chr6 88217742 88217890 -101061664 + HERVL LTR ERVL 5197 5342 -422 1918 156 39 28 chr6 88218509 88218869 -101060685 - THE1B LTR MaLR 0 364 1 183 205 0 0 chr6 88219476 88219515 -101060039 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 265 267 111 28 chr6 88220572 88220752 -101058802 - L1ME LINE L1 -451 5670 5476 25 0 0 0 chr6 88221168 88221193 -101058361 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr6 88221222 88221264 -101058290 + AT_rich Low_complexity Low_complexity 1 42 0 234 198 0 48 chr6 88221597 88221680 -101057874 + (TATATG)n Simple_repeat Simple_repeat 4 174 0 244 270 0 14 chr6 88221680 88221754 -101057800 + (TATG)n Simple_repeat Simple_repeat 3 75 0 427 236 28 0 chr6 88223787 88223893 -101055661 + MER94 DNA DNA 11 119 -15 1789 173 32 0 chr6 88223971 88224313 -101055241 - L1 LINE L1 -1098 5048 4696 2614 144 20 7 chr6 88224319 88224764 -101054790 - L1MA2 LINE L1 0 7723 7273 2841 210 95 121 chr6 88224764 88226195 -101053359 + MER52A LTR ERV1 1 1394 -361 413 205 12 0 chr6 88226191 88226274 -101053280 + MER52A LTR ERV1 1672 1755 0 * 11094 194 27 14 chr6 88226274 88229200 -101050354 - L1MA2 LINE L1 -447 7276 3942 648 103 21 10 chr6 88229204 88229301 -101050253 + MER4A LTR ERV1 1 98 -566 1574 178 17 25 chr6 88229301 88229649 -101049905 + MER4A LTR ERV1 261 664 0 913 219 23 0 chr6 88229654 88229873 -101049681 - L1MA2 LINE L1 -3631 3934 3711 649 91 0 0 chr6 88229873 88229961 -101049593 - AluY SINE Alu -20 291 204 14655 162 55 1 chr6 88229961 88232588 -101046966 - L1MA2 LINE L1 -3843 3722 955 1912 118 26 0 chr6 88232645 88232949 -101046605 + L1M1 LINE L1 2560 2871 -4694 4568 198 21 30 chr6 88232952 88233895 -101045659 - L1MA2 LINE L1 -6616 949 15 3933 173 35 16 chr6 88233893 88234726 -101044828 - L1 LINE L1 -1434 4712 3864 * 1532 172 5 6 chr6 88234723 88235184 -101044370 + L1MA4 LINE L1 5029 5489 -743 * 470 152 13 0 chr6 88235614 88235693 -101043861 - MADE1 DNA Mariner 0 80 1 240 163 0 0 chr6 88235956 88235999 -101043555 + (TG)n Simple_repeat Simple_repeat 2 44 0 4235 150 28 15 chr6 88236750 88237550 -101042004 + L1MA4 LINE L1 5476 6285 -15 810 149 14 0 chr6 88237674 88237822 -101041732 - L1MA6 LINE L1 0 6300 6151 234 65 0 0 chr6 88238461 88238507 -101041047 - LTR66 LTR ERVL -173 437 392 214 111 61 20 chr6 88238546 88238645 -101040909 + (TATAA)n Simple_repeat Simple_repeat 5 107 0 342 0 0 0 chr6 88238659 88238697 -101040857 + (TC)n Simple_repeat Simple_repeat 2 39 0 261 0 0 0 chr6 88238696 88238725 -101040829 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 1402 214 11 7 chr6 88238725 88239010 -101040544 - AluJb SINE Alu -26 286 1 783 226 63 117 chr6 88239010 88239055 -101040499 - Charlie4a DNA MER1_type -1526 435 389 2030 113 0 7 chr6 88239055 88239346 -101040208 + AluSx SINE Alu 1 289 -23 783 226 63 117 chr6 88239346 88239609 -101039945 - Charlie4a DNA MER1_type -1572 389 158 2272 173 38 0 chr6 88239609 88240030 -101039524 - L1PA16 LINE L1 -9 6157 5721 783 226 63 117 chr6 88240030 88240180 -101039374 - Charlie4a DNA MER1_type -1803 158 1 21 36 0 0 chr6 88240297 88240325 -101039229 + AT_rich Low_complexity Low_complexity 1 28 0 384 200 0 0 chr6 88240962 88241047 -101038507 + (TA)n Simple_repeat Simple_repeat 2 86 0 209 212 30 10 chr6 88241252 88241351 -101038203 + (TA)n Simple_repeat Simple_repeat 2 102 0 23 0 0 0 chr6 88242056 88242079 -101037475 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr6 88242111 88242135 -101037419 + AT_rich Low_complexity Low_complexity 1 24 0 2158 106 17 0 chr6 88242236 88242528 -101037026 + AluSx SINE Alu 1 297 -15 1402 66 0 30 chr6 88243044 88243241 -101036313 - AluY SINE Alu -1 310 120 2039 112 0 41 chr6 88243349 88243663 -101035891 + AluSg SINE Alu 2 302 -8 23 0 0 0 chr6 88243795 88243818 -101035736 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 88243986 88244007 -101035547 + AT_rich Low_complexity Low_complexity 1 21 0 4834 112 68 1 chr6 88244007 88244795 -101034759 - L1MA1 LINE L1 0 6302 5462 1964 193 49 2 chr6 88244796 88245162 -101034392 - L1M1 LINE L1 -5568 1997 947 250 155 1 141 chr6 88245145 88245304 -101034250 - L1M1 LINE L1 -7184 381 16 * 392 329 135 48 chr6 88245332 88245858 -101033696 + L1M4 LINE L1 4039 4610 -1536 1280 200 4 13 chr6 88246072 88246385 -101033169 - L1MA2 LINE L1 -744 5402 5136 * 5509 124 26 9 chr6 88246375 88247265 -101032289 + L1MA2 LINE L1 5400 6304 0 44 20 0 0 chr6 88247265 88247316 -101032238 + AT_rich Low_complexity Low_complexity 1 51 0 2348 52 13 3 chr6 88249029 88249334 -101030220 - AluY SINE Alu -3 308 1 21 0 0 0 chr6 88249365 88249386 -101030168 + GC_rich Low_complexity Low_complexity 1 21 0 615 313 79 37 chr6 88249603 88250086 -101029468 - MLT1J LTR MaLR -8 503 1 1805 154 16 47 chr6 88250186 88250569 -101028985 + THE1C LTR MaLR 5 375 0 2273 89 0 13 chr6 88251104 88251406 -101028148 - AluSq SINE Alu -15 298 1 968 319 60 20 chr6 88252554 88253053 -101026501 + HERVL LTR ERVL 2346 2864 -2900 374 279 82 16 chr6 88253113 88253235 -101026319 - LTR16C LTR ERVL -2 489 360 2032 197 33 24 chr6 88253579 88254000 -101025554 + MSTB1 LTR MaLR 1 425 -7 3883 211 84 73 chr6 88254023 88254913 -101024641 - MST-int LTR MaLR -486 1165 258 2119 93 0 7 chr6 88254913 88255192 -101024362 - AluSc SINE Alu -32 277 1 3883 211 84 73 chr6 88255192 88255452 -101024102 - MST-int LTR MaLR -1393 258 2 23 0 0 0 chr6 88255470 88255493 -101024061 + AT_rich Low_complexity Low_complexity 1 23 0 539 303 13 0 chr6 88255507 88255674 -101023880 + HERVL LTR ERVL 2927 3094 -1902 1651 313 70 22 chr6 88255792 88256943 -101022611 + HERVL LTR ERVL 3270 4552 -1212 2213 162 28 44 chr6 88257754 88258187 -101021367 + MSTB LTR MaLR 1 426 0 896 227 15 15 chr6 88259116 88259314 -101020240 - MER20 DNA MER1_type -21 198 1 330 286 156 10 chr6 88260235 88260427 -101019127 + L1MC4a LINE L1 5325 5544 -2264 1838 92 0 0 chr6 88260450 88260700 -101018854 - LTR1 LTR ERV1 -46 739 490 1100 145 73 17 chr6 88260760 88260994 -101018560 - LTR1 LTR ERV1 -538 247 1 636 271 113 11 chr6 88261043 88261327 -101018227 + L1MC4a LINE L1 5570 5882 -1926 1247 258 105 57 chr6 88263298 88263915 -101015639 - MER50 LTR ERV1 0 734 88 241 320 140 50 chr6 88264680 88264880 -101014674 - L2 LINE L2 -8 3305 3088 184 255 43 0 chr6 88265664 88265711 -101013843 - MIR3 SINE MIR -14 194 146 1279 197 40 15 chr6 88265730 88266153 -101013401 + MER74C LTR ERVL 13 528 -30 374 299 7 58 chr6 88266178 88266315 -101013239 - MIR SINE MIR -58 150 21 2440 162 27 2 chr6 88266651 88267064 -101012490 + MER95 LTR ERV 9 431 0 572 192 379 0 chr6 88267267 88267444 -101012110 - MIR SINE MIR -11 251 8 795 208 30 65 chr6 88268406 88268637 -101010917 + MER58A DNA MER1_type 2 224 0 191 275 0 0 chr6 88270791 88270831 -101008723 + L3b LINE CR1 1529 1568 -15 433 328 117 43 chr6 88270857 88271320 -101008234 + L2 LINE L2 2808 3304 -9 391 311 41 25 chr6 88271609 88271731 -101007823 - L2 LINE L2 0 3313 3190 237 329 0 47 chr6 88271769 88271854 -101007700 + L2 LINE L2 3190 3270 -2 3719 215 24 72 chr6 88271859 88272814 -101006740 + L1MB3 LINE L1 4133 5133 -1043 877 107 0 0 chr6 88272814 88272976 -101006578 + L1PA7 LINE L1 6021 6182 0 3719 215 24 72 chr6 88272976 88273082 -101006472 + L1MB3 LINE L1 5133 5243 -933 2000 112 3 17 chr6 88273082 88273397 -101006157 + AluSg SINE Alu 1 311 0 3719 215 24 72 chr6 88273397 88273705 -101005849 + L1MB3 LINE L1 5243 5430 -746 6308 108 29 4 chr6 88273710 88274796 -101004758 + L1MA1 LINE L1 5111 6224 -78 2714 98 85 13 chr6 88274796 88275243 -101004311 - LTR19A LTR ERV1 -2 484 6 400 36 54 0 chr6 88275254 88275310 -101004244 - HERVFH19I LTR ERV1 0 7719 7661 2477 154 31 18 chr6 88275310 88275658 -101003896 + L1MB3 LINE L1 5497 5839 -344 2060 212 22 66 chr6 88275658 88276237 -101003317 - MLT2B3 LTR ERVL 0 554 1 2477 154 31 18 chr6 88276237 88276493 -101003061 + L1MB3 LINE L1 5839 6181 -2 2174 74 9 46 chr6 88276693 88277018 -101002536 + AluSp SINE Alu 1 313 0 1495 210 3 14 chr6 88277336 88277631 -101001923 - AluJo SINE Alu -12 300 9 335 309 0 0 chr6 88277836 88277933 -101001621 + MIR SINE MIR 156 252 -10 853 177 0 88 chr6 88278319 88278511 -101001043 + Charlie1b DNA MER1_type 56 230 -293 312 316 84 42 chr6 88278974 88279189 -101000365 - MIR SINE MIR 0 262 39 315 335 18 6 chr6 88279643 88279813 -100999741 - L1ME4a LINE L1 -260 5861 5690 4495 181 32 38 chr6 88280226 88282118 -100997436 - L1MA7 LINE L1 -12 6279 4405 582 152 0 10 chr6 88282124 88282223 -100997331 + MER4A LTR ERV1 1 98 -566 651 153 3 215 chr6 88282223 88282526 -100997028 + MER4A LTR ERV1 261 558 -106 3433 264 22 18 chr6 88282580 88283414 -100996140 - L1M3de LINE L1 -4890 1763 927 238 291 58 23 chr6 88283432 88283518 -100996036 - L1M3de LINE L1 -6287 366 278 819 320 94 27 chr6 88283651 88284023 -100995531 - L1M3de LINE L1 -5637 1016 620 355 348 35 16 chr6 88284052 88284308 -100995246 - L1M3d LINE L1 -5630 261 1 233 327 91 0 chr6 88284551 88284661 -100994893 - L2 LINE L2 -23 3290 3171 2894 210 18 26 chr6 88284795 88285451 -100994103 + MER82 DNA MER2_type 2 652 -1 1039 204 14 36 chr6 88285484 88285704 -100993850 - AluJo SINE Alu -13 299 85 253 0 0 51 chr6 88287256 88287295 -100992259 + (CA)n Simple_repeat Simple_repeat 2 38 0 24 0 0 0 chr6 88287797 88287821 -100991733 + AT_rich Low_complexity Low_complexity 1 24 0 2941 67 3 3 chr6 88288294 88288685 -100990869 - L1PA8 LINE L1 0 6172 5782 225 220 40 0 chr6 88288771 88288821 -100990733 + MIR SINE MIR 91 142 -120 24 0 0 0 chr6 88289387 88289411 -100990143 + AT_rich Low_complexity Low_complexity 1 24 0 578 321 110 12 chr6 88290184 88290652 -100988902 + L1ME4a LINE L1 5376 5891 -230 1051 264 124 54 chr6 88290661 88291177 -100988377 + L1MCb LINE L1 1 552 -5493 2017 227 59 29 chr6 88291310 88291963 -100987591 + L1MCb LINE L1 576 1248 -4849 1739 236 58 36 chr6 88291963 88292577 -100986977 + LTR38 LTR ERV1 1 556 0 2501 58 0 0 chr6 88292625 88292934 -100986620 + AluY SINE Alu 1 309 -2 484 303 84 0 chr6 88293230 88293372 -100986182 + MIR SINE MIR 19 172 -90 322 264 107 25 chr6 88293940 88294061 -100985493 + MIR3 SINE MIR 14 144 -64 221 294 89 10 chr6 88294094 88294209 -100985345 + MIR SINE MIR 8 129 -79 2693 239 59 27 chr6 88296473 88297470 -100982084 - L1M4 LINE L1 -2689 3955 2927 1123 270 138 25 chr6 88297481 88297929 -100981625 - L1M4 LINE L1 -6039 503 5 255 350 102 26 chr6 88298061 88298287 -100981267 - MIR SINE MIR -1 261 19 2726 56 45 0 chr6 88298701 88299059 -100980495 + L1PA7 LINE L1 5781 6154 0 22 35 0 0 chr6 88299152 88299181 -100980373 + AT_rich Low_complexity Low_complexity 1 29 0 214 388 67 33 chr6 88299391 88299631 -100979923 + L2 LINE L2 2934 3181 -91 28 48 0 0 chr6 88299680 88299722 -100979832 + AT_rich Low_complexity Low_complexity 1 42 0 7504 31 1 0 chr6 88300029 88300980 -100978574 + L1PA4 LINE L1 5199 6150 -5 324 200 45 64 chr6 88300987 88301097 -100978457 + L1M4 LINE L1 5222 5329 -817 262 212 108 64 chr6 88301113 88301300 -100978254 + L1P5 LINE L1 5379 5577 -546 24 53 0 0 chr6 88302039 88302077 -100977477 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr6 88302353 88302393 -100977161 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr6 88302506 88302537 -100977017 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 88302989 88303010 -100976544 + AT_rich Low_complexity Low_complexity 1 21 0 2229 169 0 3 chr6 88303240 88303601 -100975953 + MER47A DNA MER2_type 1 360 -6 832 256 118 3 chr6 88304537 88304826 -100974728 - LTR54B LTR ERV1 -1 497 176 600 147 0 0 chr6 88304865 88304960 -100974594 - LTR54B LTR ERV1 -399 99 5 485 168 48 56 chr6 88305375 88305500 -100974054 - MLT1E1 LTR MaLR 0 654 531 12687 141 29 14 chr6 88305668 88307792 -100971762 - Tigger1 DNA MER2_type -1 2417 262 380 309 154 57 chr6 88309037 88309374 -100970180 - MLT1J LTR MaLR -74 535 177 2407 256 203 39 chr6 88309480 88310449 -100969105 + L1MDa LINE L1 13 1140 -5400 1981 203 8 61 chr6 88310451 88310968 -100968586 + L1 LINE L1 4869 5356 -827 1123 124 40 0 chr6 88310968 88311170 -100968384 + L1MA4 LINE L1 6085 6294 -6 1981 203 8 61 chr6 88311170 88311225 -100968329 + L1 LINE L1 5356 5412 -771 2368 159 15 2 chr6 88311311 88311719 -100967835 + L1MA8 LINE L1 5353 5765 -526 1400 179 23 0 chr6 88311829 88312086 -100967468 + MLT1A1-int LTR MaLR 1473 1735 0 1510 230 34 3 chr6 88312086 88312438 -100967116 + MLT1A1 LTR MaLR 1 363 -2 1480 170 18 23 chr6 88312440 88312817 -100966737 + L1MA8 LINE L1 5762 6228 -63 323 104 30 30 chr6 88312847 88312914 -100966640 + L1MA8 LINE L1 6218 6284 -7 23 0 0 0 chr6 88312926 88312949 -100966605 + AT_rich Low_complexity Low_complexity 1 23 0 699 217 81 13 chr6 88312949 88313184 -100966370 + L1MDa LINE L1 1125 1375 -5165 * 1699 255 95 8 chr6 88313165 88313820 -100965734 + L1MDa LINE L1 2546 3257 -3283 752 355 105 31 chr6 88314441 88314830 -100964724 + L3 LINE CR1 924 1376 -201 2267 100 7 0 chr6 88314830 88315139 -100964415 - AluSq SINE Alu -2 311 1 752 355 105 31 chr6 88315139 88315357 -100964197 + L3 LINE CR1 1376 1576 -1 2286 106 3 0 chr6 88315924 88316236 -100963318 + AluSq SINE Alu 1 313 0 346 323 91 21 chr6 88317350 88317536 -100962018 + MIR SINE MIR 64 262 0 288 194 87 58 chr6 88317681 88317784 -100961770 + Charlie8 DNA MER1_type 43 148 -2269 3518 77 2 2 chr6 88317785 88318266 -100961288 - L1P LINE L1 -1426 4720 4240 1809 70 8 0 chr6 88318266 88318489 -100961065 + L1PA8 LINE L1 5927 6170 -2 23 33 0 0 chr6 88319081 88319111 -100960443 + AT_rich Low_complexity Low_complexity 1 30 0 255 103 0 0 chr6 88319285 88319324 -100960230 + (CA)n Simple_repeat Simple_repeat 2 40 0 1498 191 4 25 chr6 88319584 88319862 -100959692 + AluJo SINE Alu 5 276 -36 300 27 0 0 chr6 88319867 88319904 -100959650 + (CA)n Simple_repeat Simple_repeat 1 37 0 1254 241 117 22 chr6 88320064 88320466 -100959088 + MLT2B1 LTR ERVL 1 440 -80 239 245 0 0 chr6 88320481 88320530 -100959024 + (TG)n Simple_repeat Simple_repeat 2 50 0 239 154 19 19 chr6 88320558 88320610 -100958944 + MLT2B1 LTR ERVL 461 512 -8 2064 127 3 10 chr6 88320801 88321101 -100958453 - AluSx SINE Alu -14 298 1 309 26 0 0 chr6 88321508 88321546 -100958008 + (TG)n Simple_repeat Simple_repeat 2 39 0 188 108 0 27 chr6 88322495 88322532 -100957022 + (TGG)n Simple_repeat Simple_repeat 3 38 0 190 365 24 36 chr6 88323032 88323199 -100956355 + L2 LINE L2 1316 1480 -1834 736 179 129 118 chr6 88324311 88324674 -100954880 + LTR34 LTR ERV1 4 370 -329 * 821 199 42 21 chr6 88324665 88324856 -100954698 + LTR34 LTR ERV1 501 695 -4 305 133 0 33 chr6 88325079 88325139 -100954415 - MLT1K LTR MaLR -19 569 512 23 0 0 0 chr6 88325197 88325220 -100954334 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 88326269 88326290 -100953264 + AT_rich Low_complexity Low_complexity 1 21 0 348 24 0 0 chr6 88328429 88328470 -100951084 + (CA)n Simple_repeat Simple_repeat 2 42 0 324 328 62 57 chr6 88328586 88328763 -100950791 - MIR SINE MIR -70 192 15 1671 251 121 24 chr6 88329500 88330121 -100949433 + L1MC4a LINE L1 6397 7077 -731 886 140 21 119 chr6 88330113 88330348 -100949206 + L1MA10 LINE L1 6122 6333 -1 * 195 184 0 0 chr6 88330382 88330420 -100949134 + GA-rich Low_complexity Low_complexity 3 40 0 2846 244 16 17 chr6 88330423 88331169 -100948385 + L1MC4a LINE L1 7064 7808 0 710 288 34 15 chr6 88331414 88331514 -100948040 + L1MC5 LINE L1 6476 6573 -1241 2459 38 7 0 chr6 88331514 88331806 -100947748 + AluY SINE Alu 2 295 -16 710 288 34 15 chr6 88331806 88332037 -100947517 + L1MC5 LINE L1 6573 6825 -989 1002 229 116 63 chr6 88332094 88332457 -100947097 + LTR41 LTR ERVL 377 758 -15 414 245 117 37 chr6 88332613 88332776 -100946778 - MER46C DNA MER2_type -158 180 5 459 260 73 27 chr6 88333046 88333196 -100946358 - LTR33 LTR ERVL -356 165 9 207 0 0 0 chr6 88333427 88333450 -100946104 + (A)n Simple_repeat Simple_repeat 1 23 0 357 336 47 0 chr6 88333450 88333599 -100945955 - L1MC/D LINE L1 -2224 5584 5429 1961 113 0 34 chr6 88333847 88334162 -100945392 - AluSq SINE Alu 0 307 3 322 292 31 10 chr6 88334281 88334377 -100945177 + L1MC/D LINE L1 5625 5722 -2086 2739 220 14 20 chr6 88334580 88335135 -100944419 - MLT2B3 LTR ERVL -2 552 1 908 275 114 42 chr6 88335159 88335613 -100943941 + L1MC4a LINE L1 5357 5843 -1965 840 231 162 37 chr6 88335639 88336039 -100943515 + L1MD1 LINE L1 4381 4829 -1317 1159 129 249 5 chr6 88336081 88336298 -100943256 - AluSg1 SINE Alu -39 270 1 2696 233 122 21 chr6 88336300 88337556 -100941998 + L1MD1 LINE L1 4849 6227 -15 361 292 104 31 chr6 88337562 88337754 -100941800 + L1MC4a LINE L1 5878 6083 -1725 27 0 0 0 chr6 88338798 88338825 -100940729 + AT_rich Low_complexity Low_complexity 1 27 0 284 275 96 12 chr6 88339083 88339285 -100940269 + L2 LINE L2 2952 3256 -57 223 375 57 23 chr6 88339279 88339455 -100940099 - MIR3 SINE MIR -7 201 20 * 198 301 11 65 chr6 88339765 88339858 -100939696 - L2 LINE L2 -8 3264 3177 206 341 12 0 chr6 88342275 88342357 -100937197 - L2 LINE L2 -3 3269 3187 220 340 10 31 chr6 88342507 88342604 -100936950 - L2 LINE L2 -189 3083 2989 255 159 0 16 chr6 88342717 88342780 -100936774 + L1MB3 LINE L1 6120 6181 -2 771 226 49 0 chr6 88342826 88342990 -100936564 + MER20 DNA MER1_type 45 216 -3 27 49 0 0 chr6 88343231 88343272 -100936282 + AT_rich Low_complexity Low_complexity 1 41 0 1659 139 60 0 chr6 88344082 88344376 -100935178 - AluSx SINE Alu 0 310 1 399 349 43 34 chr6 88344734 88344969 -100934585 - MIR SINE MIR -6 256 20 870 77 0 26 chr6 88345074 88345214 -100934340 - AluSg/x SINE Alu 0 304 168 488 235 118 15 chr6 88345216 88345352 -100934202 - MIR SINE MIR -74 188 39 203 320 103 21 chr6 88346319 88346416 -100933138 + MIR SINE MIR 141 245 -17 486 201 158 61 chr6 88347465 88347629 -100931925 + MER5A DNA MER1_type 10 189 0 321 329 35 21 chr6 88347721 88347864 -100931690 - MER5B DNA MER1_type -32 146 2 186 71 0 0 chr6 88349158 88349186 -100930368 + (A)n Simple_repeat Simple_repeat 1 28 0 194 280 67 13 chr6 88350390 88350465 -100929089 - MIR SINE MIR -33 229 151 218 288 30 0 chr6 88356142 88356208 -100923346 + CT-rich Low_complexity Low_complexity 2 69 0 194 329 40 13 chr6 88357142 88357218 -100922336 + L2 LINE L2 3236 3313 0 477 264 72 79 chr6 88357413 88357678 -100921876 - L2 LINE L2 -11 3302 3040 588 339 52 12 chr6 88360579 88360830 -100918724 - MIR SINE MIR 0 262 2 305 316 50 0 chr6 88363112 88363251 -100916303 + L1MEc LINE L1 953 1098 -5465 856 185 119 60 chr6 88363266 88363585 -100915969 + MER47A DNA MER2_type 28 365 -1 406 293 30 83 chr6 88363587 88363918 -100915636 + L1MEc LINE L1 1052 1372 -5000 449 296 39 52 chr6 88363923 88364500 -100915054 + L1MEc LINE L1 1288 1996 -4539 348 325 35 28 chr6 88364657 88364943 -100914611 + L1MEc LINE L1 2702 2989 -3393 2250 238 53 6 chr6 88364953 88365659 -100913895 + L1ME1 LINE L1 5343 5993 -173 23 0 0 0 chr6 88365659 88365682 -100913872 + AT_rich Low_complexity Low_complexity 1 23 0 2239 194 21 6 chr6 88365699 88366213 -100913341 + LTR27 LTR ERV1 3 494 -7 1306 237 41 43 chr6 88366394 88366960 -100912594 + HUERS-P2 LTR ERV1 75 573 -2515 3840 164 21 27 chr6 88367101 88368673 -100910881 + HUERS-P2 LTR ERV1 609 2189 -3028 2189 115 0 32 chr6 88368673 88368987 -100910567 - AluSc SINE Alu -5 304 1 3840 164 21 27 chr6 88368987 88369907 -100909647 + HUERS-P2 LTR ERV1 2189 4825 -392 631 110 0 0 chr6 88369907 88369998 -100909556 + LTR27-int LTR ERV1 7000 7090 -1 2374 172 23 6 chr6 88370000 88370520 -100909034 + LTR27 LTR ERV1 3 501 0 1544 293 51 22 chr6 88370531 88371217 -100908337 + L1MC4 LINE L1 6217 6922 -1120 952 194 74 46 chr6 88372259 88372543 -100907011 - MER2 DNA MER2_type 0 345 54 2124 107 0 10 chr6 88373255 88373545 -100906009 - AluSc SINE Alu -14 295 9 1153 236 88 15 chr6 88374008 88374415 -100905139 - HsTC2 DNA Tc2 0 1899 1287 255 222 12 37 chr6 88374469 88374550 -100905004 - HsTC2 DNA Tc2 -1818 80 2 23 0 0 0 chr6 88374661 88374684 -100904870 + AT_rich Low_complexity Low_complexity 1 23 0 616 68 65 34 chr6 88375526 88375853 -100903701 + (CATAT)n Simple_repeat Simple_repeat 1 337 0 375 325 45 70 chr6 88375877 88376120 -100903434 + HAL1b LINE L1 334 570 -778 314 252 60 46 chr6 88376156 88376307 -100903247 + L1ME4a LINE L1 5967 6119 -2 206 333 20 20 chr6 88377324 88377423 -100902131 + L2 LINE L2 3202 3300 -13 306 227 121 92 chr6 88378083 88378224 -100901330 + MLT1J LTR MaLR 273 417 -94 3258 38 2 2 chr6 88379627 88380024 -100899530 + L1PA5 LINE L1 5754 6150 -4 1748 151 0 34 chr6 88382182 88382473 -100897081 + AluSq SINE Alu 1 281 -32 734 259 41 27 chr6 88382559 88382779 -100896775 + MER58A DNA MER1_type 1 223 -1 21 0 0 0 chr6 88384258 88384279 -100895275 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 88384356 88384379 -100895175 + AT_rich Low_complexity Low_complexity 1 23 0 349 257 45 92 chr6 88384619 88384777 -100894777 - MIR3 SINE MIR -21 187 35 229 163 61 20 chr6 88384798 88384847 -100894707 + MIR SINE MIR 104 154 -108 1956 128 4 0 chr6 88385876 88386149 -100893405 + AluSx SINE Alu 22 295 -17 348 174 14 28 chr6 88386192 88386291 -100893263 - MLT1D LTR MaLR 0 505 426 33 0 0 0 chr6 88386634 88386667 -100892887 + AT_rich Low_complexity Low_complexity 1 33 0 1081 223 141 20 chr6 88387001 88387342 -100892212 - MLT1D LTR MaLR -120 385 4 221 139 0 0 chr6 88388600 88388636 -100890918 + L2 LINE L2 3270 3305 -8 2239 129 79 20 chr6 88389461 88389865 -100889689 - MSTA LTR MaLR 0 428 1 534 284 19 0 chr6 88391689 88391851 -100887703 - MER97c DNA MER1_type? -911 179 15 247 333 94 19 chr6 88391991 88392150 -100887404 - LTR16C LTR ERVL -111 380 210 2063 118 3 17 chr6 88392645 88392941 -100886613 - AluSx SINE Alu -12 300 9 730 279 68 49 chr6 88393121 88393487 -100886067 + MLT1F LTR MaLR 1 373 -169 1326 238 103 49 chr6 88393618 88394105 -100885449 + MLT1F LTR MaLR 26 538 -4 192 234 0 78 chr6 88394807 88394871 -100884683 - MIR SINE MIR -26 236 178 4124 134 5 3 chr6 88394901 88395512 -100884042 - LTR9 LTR ERV1 0 612 1 12173 157 19 2 chr6 88395512 88397509 -100882045 - HUERS-P3 LTR ERV1 -1 8918 6889 * 40223 128 23 21 chr6 88397503 88404130 -100875424 - HUERS-P3 LTR ERV1 -2264 6655 15 1459 144 14 9 chr6 88404145 88404367 -100875187 - LTR9 LTR ERV1 0 612 390 566 303 115 13 chr6 88405567 88405801 -100873753 - MIR SINE MIR 0 262 5 3599 122 4 12 chr6 88406311 88406820 -100872734 - LTR9 LTR ERV1 -107 505 1 2340 279 49 33 chr6 88406820 88407200 -100872354 + L2 LINE L2 1645 2017 -1297 3839 142 31 50 chr6 88407200 88407904 -100871650 + LTR8 LTR ERV1 1 691 0 2340 279 49 33 chr6 88407904 88408338 -100871216 + L2 LINE L2 2017 2472 -842 1348 203 4 23 chr6 88408339 88408631 -100870923 - AluJb SINE Alu 0 312 28 383 295 0 0 chr6 88408633 88408728 -100870826 + L2 LINE L2 2465 2559 -755 437 165 247 0 chr6 88408758 88408855 -100870699 + FRAM SINE Alu 34 154 -22 602 225 17 21 chr6 88408987 88409136 -100870418 - MLT1F1 LTR MaLR -8 559 396 1107 302 88 20 chr6 88409137 88409841 -100869713 + L2 LINE L2 2548 3295 -18 210 356 126 0 chr6 88409938 88410025 -100869529 - MIR SINE MIR -156 106 9 492 315 22 28 chr6 88410042 88410223 -100869331 + MIR SINE MIR 16 195 -67 240 322 102 35 chr6 88410540 88410795 -100868759 + L2 LINE L2 2183 2454 -860 28971 131 36 55 chr6 88410925 88417192 -100862362 + L1PA3 LINE L1 12 6152 -3 226 204 0 57 chr6 88417820 88417908 -100861646 + A-rich Low_complexity Low_complexity 3 85 0 297 313 71 45 chr6 88419988 88420186 -100859368 - L2 LINE L2 -980 2334 2132 21 36 0 0 chr6 88422295 88422323 -100857231 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 88423099 88423129 -100856425 + AT_rich Low_complexity Low_complexity 1 30 0 2394 194 42 62 chr6 88423875 88424550 -100855004 - MER67B LTR ERV1 0 661 1 1042 206 10 34 chr6 88424706 88424915 -100854639 + MER20 DNA MER1_type 1 204 -15 2327 147 69 24 chr6 88424916 88425380 -100854174 + MER31A LTR ERV1 1 485 0 2144 104 4 7 chr6 88425767 88426047 -100853507 - AluSx SINE Alu -33 279 1 237 211 0 0 chr6 88427164 88427216 -100852338 + (TA)n Simple_repeat Simple_repeat 1 52 0 223 304 58 36 chr6 88427392 88427530 -100852024 - L2 LINE L2 0 3313 3173 342 0 0 0 chr6 88428552 88428590 -100850964 + (TG)n Simple_repeat Simple_repeat 2 39 0 1517 204 127 8 chr6 88429964 88430351 -100849203 - L1ME3 LINE L1 -2 6160 5728 4614 169 29 14 chr6 88430366 88431048 -100848506 - L1MB3 LINE L1 -9 6174 5475 237 65 0 0 chr6 88431048 88431079 -100848475 + (TA)n Simple_repeat Simple_repeat 1 31 0 4614 169 29 14 chr6 88431079 88431271 -100848283 - L1MB3 LINE L1 -708 5475 5287 2528 102 16 14 chr6 88431341 88431704 -100847850 + THE1B LTR MaLR 1 364 0 908 230 5 25 chr6 88432219 88432419 -100847135 - MER20 DNA MER1_type -1 218 23 2393 150 7 48 chr6 88433362 88433801 -100845753 - MSTC LTR MaLR 0 428 8 268 342 88 79 chr6 88435565 88436260 -100843294 + L2 LINE L2 1211 1917 -1397 1550 115 18 0 chr6 88436260 88436486 -100843068 - MER30 DNA MER1_type 0 230 1 268 342 88 79 chr6 88436486 88436676 -100842878 + L2 LINE L2 1917 2104 -1210 491 271 63 56 chr6 88436747 88437031 -100842523 - L2 LINE L2 -876 2438 2153 412 307 49 49 chr6 88437103 88437347 -100842207 - L2 LINE L2 -1089 2225 1982 220 235 20 0 chr6 88437347 88437398 -100842156 + GA-rich Low_complexity Low_complexity 3 54 0 862 227 93 44 chr6 88437458 88437779 -100841775 + MLT1C LTR MaLR 131 467 0 6982 66 3 0 chr6 88437971 88439319 -100840235 - L1PA7 LINE L1 -5 6149 4798 283 274 118 30 chr6 88439734 88440063 -100839491 - L1ME4a LINE L1 -5 6116 5759 1919 140 0 4 chr6 88440069 88440348 -100839206 - AluSx SINE Alu -18 294 17 237 151 189 0 chr6 88441021 88441074 -100838480 + MIR SINE MIR 83 145 -63 701 214 0 0 chr6 88441149 88441261 -100838293 + FLAM_C SINE Alu 10 121 -22 467 17 17 0 chr6 88441266 88441326 -100838228 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 24 32 0 0 chr6 88442852 88442883 -100836671 + AT_rich Low_complexity Low_complexity 1 31 0 603 230 14 14 chr6 88443514 88443662 -100835892 + MIR SINE MIR 75 222 -40 432 252 36 9 chr6 88443803 88443914 -100835640 + MLT1L LTR MaLR 418 531 -84 3989 130 5 25 chr6 88444206 88444854 -100834700 + MER41B LTR ERV1 1 635 0 250 258 0 15 chr6 88447443 88447509 -100832045 + MIR SINE MIR 178 242 -20 24 67 0 0 chr6 88447693 88447738 -100831816 + AT_rich Low_complexity Low_complexity 1 45 0 202 416 23 17 chr6 88447878 88448051 -100831503 - MER5A DNA MER1_type 0 189 16 286 213 12 38 chr6 88448055 88448135 -100831419 - MIR SINE MIR -109 153 76 1417 159 4 20 chr6 88448235 88448487 -100831067 + AluSx SINE Alu 1 248 -64 1813 98 18 4 chr6 88448589 88448866 -100830688 + L1P LINE L1 1619 1899 -4247 539 277 238 0 chr6 88449287 88449493 -100830061 - MIR SINE MIR 0 262 8 1521 214 108 123 chr6 88450836 88451811 -100827743 - LTR1B LTR ERV1 0 1020 1 2499 123 21 102 chr6 88452344 88452872 -100826682 - MER4B LTR ERV1 0 610 126 2069 87 17 21 chr6 88452872 88453161 -100826393 - AluSx SINE Alu -11 301 14 207 0 0 0 chr6 88453161 88453184 -100826370 + (T)n Simple_repeat Simple_repeat 1 23 0 450 71 43 0 chr6 88453184 88453254 -100826300 - MER41B LTR ERV1 -88 547 475 * 758 130 23 15 chr6 88453249 88453380 -100826174 - MER4B LTR ERV1 -478 132 1 302 323 142 7 chr6 88453504 88453659 -100825895 - MIR3 SINE MIR -13 195 20 501 306 128 9 chr6 88454685 88454904 -100824650 + MIR SINE MIR 18 262 0 29 0 0 0 chr6 88455113 88455142 -100824412 + AT_rich Low_complexity Low_complexity 1 29 0 210 274 167 12 chr6 88459347 88459431 -100820123 - L2 LINE L2 -626 2688 2592 301 316 58 7 chr6 88459460 88459615 -100819939 - L2 LINE L2 -1261 2053 1891 184 346 56 9 chr6 88459645 88459752 -100819802 - L2 LINE L2 -1605 1709 1598 645 253 81 0 chr6 88461191 88461365 -100818189 - MER58A DNA MER1_type -36 188 1 410 243 45 18 chr6 88461432 88461543 -100818011 + L2 LINE L2 3200 3313 0 321 257 0 14 chr6 88461659 88461733 -100817821 - MER2 DNA MER2_type 0 345 273 2478 14 44 3 chr6 88461744 88462039 -100817515 + AluYa5 SINE Alu 5 311 0 3529 49 20 7 chr6 88462411 88462862 -100816692 - L1PA7 LINE L1 -1 6153 5697 1449 149 91 77 chr6 88465522 88465964 -100813590 - LTR7 LTR ERV1 -2 448 1 27928 61 3 3 chr6 88465964 88470237 -100809317 - HERVH LTR ERV1 0 7713 3505 18559 89 62 50 chr6 88470241 88473492 -100806062 - HERVH LTR ERV1 -4423 3290 1 1363 161 91 77 chr6 88473494 88473936 -100805618 - LTR7 LTR ERV1 -2 448 1 743 194 102 32 chr6 88474002 88474188 -100805366 - MIR SINE MIR -57 205 7 312 137 0 0 chr6 88474352 88474403 -100805151 + (TG)n Simple_repeat Simple_repeat 2 52 0 336 327 45 74 chr6 88474568 88474770 -100804784 + MIR SINE MIR 62 257 -5 209 376 116 22 chr6 88475036 88475406 -100804148 - L2 LINE L2 -47 3225 2821 234 342 191 13 chr6 88475604 88475835 -100803719 + L3 LINE CR1 1077 1348 -229 218 313 61 10 chr6 88476137 88476236 -100803318 + MIR SINE MIR 103 206 -56 25 31 0 0 chr6 88476640 88476672 -100802882 + AT_rich Low_complexity Low_complexity 1 32 0 795 261 115 0 chr6 88477189 88477415 -100802139 - MIR SINE MIR -2 260 9 755 288 165 23 chr6 88477437 88477874 -100801680 - L3 LINE CR1 -5 1572 1074 338 328 67 22 chr6 88477884 88478105 -100801449 + MIR SINE MIR 8 230 -32 * 404 320 84 33 chr6 88478089 88478423 -100801131 + L2 LINE L2 2916 3266 -47 21 0 0 0 chr6 88478423 88478444 -100801110 + AT_rich Low_complexity Low_complexity 1 21 0 2267 112 3 10 chr6 88478551 88478856 -100800698 - AluSx SINE Alu -9 303 1 23 0 0 0 chr6 88479872 88479895 -100799659 + AT_rich Low_complexity Low_complexity 1 23 0 2229 112 0 0 chr6 88480035 88480331 -100799223 - AluSg SINE Alu -10 300 5 216 67 0 0 chr6 88480745 88480775 -100798779 + (TAG)n Simple_repeat Simple_repeat 3 32 0 432 340 87 15 chr6 88480778 88480984 -100798570 - MIR SINE MIR -1 261 41 262 297 0 0 chr6 88481812 88481876 -100797678 + MER7A DNA MER2_type 1 64 -284 * 1717 201 0 9 chr6 88481867 88482201 -100797353 + MER7A DNA MER2_type 16 344 -2 22 35 0 0 chr6 88482392 88482421 -100797133 + AT_rich Low_complexity Low_complexity 1 29 0 323 249 119 20 chr6 88482445 88482646 -100796908 - L1ME3A LINE L1 -285 5885 5665 313 311 48 0 chr6 88482675 88482903 -100796651 - L1ME3A LINE L1 -786 5360 5122 23 0 0 0 chr6 88483033 88483056 -100796498 + AT_rich Low_complexity Low_complexity 1 23 0 280 178 55 55 chr6 88485943 88486016 -100793538 - L2 LINE L2 0 3313 3241 3985 187 62 66 chr6 88486527 88487588 -100791966 - L1MA9 LINE L1 0 6312 5256 * 6147 116 45 4 chr6 88487586 88488733 -100790821 - L1MA1 LINE L1 -7 6295 5102 1874 154 14 0 chr6 88488735 88489092 -100790462 - L1MA9 LINE L1 -849 5297 4936 1843 184 88 0 chr6 88489210 88489597 -100789957 + MSTB LTR MaLR 1 421 -5 203 213 0 16 chr6 88489693 88489754 -100789800 + CT-rich Low_complexity Low_complexity 1 60 0 379 325 41 15 chr6 88489927 88490195 -100789359 - L1ME LINE L1 -327 5794 5520 21 0 0 0 chr6 88490266 88490287 -100789267 + AT_rich Low_complexity Low_complexity 1 21 0 2231 253 108 16 chr6 88490751 88491439 -100788115 - MER21B LTR ERV1 -101 762 12 344 236 136 7 chr6 88492390 88492530 -100787024 - L1ME4a LINE L1 -5 6116 5959 263 295 170 5 chr6 88492532 88492756 -100786798 - L1ME4a LINE L1 -202 5919 5659 228 350 137 8 chr6 88493592 88493709 -100785845 + MER5B DNA MER1_type 46 177 -1 197 376 52 62 chr6 88494566 88494776 -100784778 - L2 LINE L2 -27 3245 3038 284 305 62 79 chr6 88494814 88495035 -100784519 - L2 LINE L2 -343 2971 2755 443 281 7 15 chr6 88495035 88495170 -100784384 + MER94 DNA DNA 1 134 0 284 305 62 79 chr6 88495170 88495240 -100784314 - L2 LINE L2 -559 2755 2685 517 356 82 23 chr6 88495255 88495792 -100783762 + L2 LINE L2 2702 3270 -2 15633 118 9 11 chr6 88497676 88500498 -100779056 + L1PA8A LINE L1 2801 5608 -523 4987 164 68 6 chr6 88550801 88551796 -100727758 - L1MA9 LINE L1 0 6312 5256 * 6580 112 43 5 chr6 88551794 88552943 -100726611 - L1MA1 LINE L1 -7 6295 5102 1982 157 14 0 chr6 88552945 88553302 -100726252 - L1MA9 LINE L1 -849 5297 4936 1961 189 87 0 chr6 88553420 88553812 -100725742 + MSTB LTR MaLR 1 426 0 203 213 0 16 chr6 88553903 88553964 -100725590 + CT-rich Low_complexity Low_complexity 1 60 0 467 325 41 15 chr6 88554137 88554405 -100725149 - L1ME LINE L1 -327 5794 5520 21 0 0 0 chr6 88554476 88554497 -100725057 + AT_rich Low_complexity Low_complexity 1 21 0 2408 254 114 16 chr6 88554946 88555648 -100723906 - MER21B LTR ERV1 -81 782 12 344 236 136 7 chr6 88556599 88556739 -100722815 - L1ME4a LINE L1 -5 6116 5959 341 295 170 5 chr6 88556741 88556965 -100722589 - L1ME4a LINE L1 -202 5919 5659 228 350 137 8 chr6 88557801 88557918 -100721636 + MER5B DNA MER1_type 46 177 -1 197 376 52 62 chr6 88558775 88558985 -100720569 - L2 LINE L2 -27 3245 3038 284 305 62 79 chr6 88559023 88559244 -100720310 - L2 LINE L2 -343 2971 2755 443 281 7 15 chr6 88559244 88559379 -100720175 + MER94 DNA DNA 1 134 0 284 305 62 79 chr6 88559379 88559449 -100720105 - L2 LINE L2 -559 2755 2685 517 356 82 23 chr6 88559463 88560000 -100719554 + L2 LINE L2 2702 3270 -2 478 184 48 0 chr6 88561636 88561761 -100717793 - MER53 DNA DNA -30 159 29 23 0 0 0 chr6 88561781 88561804 -100717750 + AT_rich Low_complexity Low_complexity 1 23 0 41560 43 2 3 chr6 88561804 88566712 -100712842 - L1PA4 LINE L1 -3 6152 1253 2716 16 0 25 chr6 88566712 88567031 -100712523 - AluYa5 SINE Alu 0 311 1 41560 43 2 3 chr6 88567031 88568281 -100711273 - L1PA4 LINE L1 -4902 1253 3 256 231 0 0 chr6 88568470 88568522 -100711032 + GA-rich Low_complexity Low_complexity 1 52 0 36 0 0 0 chr6 88568684 88568720 -100710834 + AT_rich Low_complexity Low_complexity 1 36 0 252 218 36 18 chr6 88569091 88569201 -100710353 + (TA)n Simple_repeat Simple_repeat 2 113 0 506 376 76 44 chr6 88570204 88570721 -100708833 + L2 LINE L2 2742 3272 0 424 215 13 0 chr6 88571362 88571441 -100708113 - MER5A DNA MER1_type -100 89 10 279 274 102 57 chr6 88571493 88571650 -100707904 - L2 LINE L2 -1619 1695 1532 841 186 21 52 chr6 88572040 88572233 -100707321 + MER5A DNA MER1_type 3 189 0 218 242 15 30 chr6 88572519 88572585 -100706969 + (CAA)n Simple_repeat Simple_repeat 1 65 0 3710 157 30 22 chr6 88573493 88574105 -100705449 + MER39 LTR ERV1 6 611 -96 2249 179 47 2 chr6 88574105 88574513 -100705041 + MSTB LTR MaLR 1 426 0 8436 171 48 12 chr6 88574513 88576106 -100703448 + MSTB-int LTR MaLR 1 1651 0 2212 192 34 2 chr6 88576108 88576519 -100703035 + MSTB LTR MaLR 3 426 0 3710 157 30 22 chr6 88576519 88576596 -100702958 + MER39 LTR ERV1 611 705 -2 2406 77 0 0 chr6 88577803 88578089 -100701465 + AluSc SINE Alu 21 306 -3 29 70 0 0 chr6 88578105 88578162 -100701392 + AT_rich Low_complexity Low_complexity 1 57 0 723 263 17 0 chr6 88578220 88578395 -100701159 + MER5B DNA MER1_type 1 178 0 495 110 12 0 chr6 88578540 88578622 -100700932 - L1MA9 LINE L1 -323 5977 5895 * 1028 154 47 135 chr6 88578621 88578984 -100700570 + L1MA9 LINE L1 5980 6310 -2 2450 76 0 0 chr6 88580231 88580532 -100699022 + AluY SINE Alu 1 301 -10 353 311 88 44 chr6 88580612 88580840 -100698714 + MIR SINE MIR 19 256 -6 1685 89 0 0 chr6 88581481 88581718 -100697836 - L1PA13 LINE L1 -213 5950 5714 357 74 19 0 chr6 88581714 88581768 -100697786 + L1PA13 LINE L1 6061 6115 -48 * 414 150 39 20 chr6 88582000 88582113 -100697441 - LTR54B LTR ERV1 -5 505 391 539 374 81 29 chr6 88583584 88583894 -100695660 - L2 LINE L2 -4 3268 2943 291 154 19 0 chr6 88583923 88583975 -100695579 - MER5B DNA MER1_type -1 177 125 386 382 10 10 chr6 88583986 88584190 -100695364 - L2 LINE L2 -566 2748 2545 26 30 0 0 chr6 88584280 88584313 -100695241 + AT_rich Low_complexity Low_complexity 1 33 0 306 109 109 0 chr6 88584315 88584370 -100695184 + L1PA8 LINE L1 5889 5949 -223 8159 55 9 0 chr6 88584489 88585446 -100694108 - LTR5 LTR ERVK -3 966 1 432 63 11 168 chr6 88585446 88585541 -100694013 - SVA Other Other -450 936 857 13838 16 2 0 chr6 88585541 88587188 -100692366 - HERVK LTR ERVK -95 7148 5533 46699 12 6 0 chr6 88587445 88592948 -100686606 - HERVK LTR ERVK -1710 5533 1 8145 56 9 0 chr6 88592951 88593908 -100685646 - LTR5 LTR ERVK -3 966 1 307 280 300 16 chr6 88596126 88596532 -100683022 - L2 LINE L2 -153 3119 2575 873 86 86 0 chr6 88596774 88596902 -100682652 - MER85 DNA T2_type 0 139 1 576 250 47 14 chr6 88596923 88597071 -100682483 - MER5B DNA MER1_type -22 156 4 206 0 0 65 chr6 88598147 88598178 -100681376 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 39717 41 22 3 chr6 88598178 88604203 -100675351 - L1PA3 LINE L1 -10 6145 1 294 298 13 82 chr6 88605116 88605274 -100674280 - L2 LINE L2 -248 3065 2919 265 334 104 36 chr6 88605289 88605624 -100673930 - L2 LINE L2 -787 2527 2170 253 181 0 14 chr6 88605945 88606017 -100673537 - L1P LINE L1 -2865 3281 3211 * 3584 83 20 2 chr6 88606011 88606902 -100672652 - L1PA8 LINE L1 -395 5777 4876 2803 76 29 0 chr6 88606902 88607282 -100672272 + L1PA8 LINE L1 5779 6170 -2 3048 209 10 17 chr6 88607286 88607995 -100671559 - L1P LINE L1 -2938 3208 2505 205 244 37 0 chr6 88608294 88608376 -100671178 + (TA)n Simple_repeat Simple_repeat 1 85 0 358 351 61 37 chr6 88608697 88609073 -100670481 - L2 LINE L2 -397 2917 2533 322 218 13 26 chr6 88609077 88609155 -100670399 + MLT2B1 LTR ERVL 1 77 -337 9667 37 2 1 chr6 88609161 88611116 -100668438 - L1PA3 LINE L1 -2 6153 4200 21335 49 0 3 chr6 88611118 88613810 -100665744 + L1P LINE L1 602 3285 -2861 950 205 154 73 chr6 88613810 88614180 -100665374 + MLT2B1 LTR ERVL 70 478 -42 330 26 0 0 chr6 88614180 88614219 -100665335 + (TG)n Simple_repeat Simple_repeat 1 39 0 950 205 154 73 chr6 88614219 88614258 -100665296 + MLT2B1 LTR ERVL 478 512 -8 282 293 60 35 chr6 88614299 88614415 -100665139 - L2 LINE L2 -815 2499 2381 1767 178 51 40 chr6 88614530 88614571 -100664983 - THE1C LTR MaLR 0 375 336 2103 136 0 23 chr6 88614571 88614880 -100664674 + AluSx SINE Alu 1 302 -10 1767 178 51 40 chr6 88614880 88615209 -100664345 - THE1C LTR MaLR -39 336 1 6873 138 87 12 chr6 88615209 88616379 -100663175 - THE1C-int LTR MaLR 0 1580 323 * 30459 96 11 13 chr6 88616377 88621807 -100657747 + L1PA7 LINE L1 735 6151 -3 2151 142 0 6 chr6 88621838 88622169 -100657385 - THE1C-int LTR MaLR -1249 331 3 1798 165 74 8 chr6 88622171 88622523 -100657031 - THE1C LTR MaLR 0 375 1 466 239 7 51 chr6 88622591 88622729 -100656825 + FLAM_C SINE Alu 1 132 -1 1939 118 4 0 chr6 88622966 88623229 -100656325 - AluSg SINE Alu -17 293 30 270 0 0 0 chr6 88623368 88623398 -100656156 + (TG)n Simple_repeat Simple_repeat 2 31 0 444 150 0 0 chr6 88624132 88624212 -100655342 + (TC)n Simple_repeat Simple_repeat 1 80 0 281 320 25 8 chr6 88624613 88624735 -100654819 + MIR SINE MIR 71 194 -68 2402 89 3 0 chr6 88625421 88625724 -100653830 + AluSc SINE Alu 4 307 -2 522 369 67 52 chr6 88626478 88626612 -100652942 + L2 LINE L2 1792 1922 -1392 207 0 0 0 chr6 88626612 88626635 -100652919 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 522 369 67 52 chr6 88626635 88627483 -100652071 + L2 LINE L2 1922 2789 -525 392 198 0 9 chr6 88627745 88627851 -100651703 + (TA)n Simple_repeat Simple_repeat 2 106 0 1697 205 13 0 chr6 88630731 88631029 -100648525 - L1M1 LINE L1 -6833 732 431 1845 203 76 19 chr6 88631183 88631364 -100648190 - L1 LINE L1 -2449 3697 3528 2206 117 0 0 chr6 88631364 88631654 -100647900 - AluSc SINE Alu -19 290 1 1845 203 76 19 chr6 88631654 88632048 -100647506 - L1 LINE L1 -2618 3528 3089 1630 262 16 6 chr6 88632055 88632562 -100646992 + L1M4 LINE L1 2542 3053 -3093 381 299 94 0 chr6 88632597 88632714 -100646840 + MIR SINE MIR 46 173 -89 1458 45 0 0 chr6 88632961 88633139 -100646415 - L1PA4 LINE L1 -3 6152 5975 3447 34 17 0 chr6 88633139 88633555 -100645999 + L1PA4 LINE L1 5552 5974 -181 2341 59 7 3 chr6 88633955 88634241 -100645313 - AluY SINE Alu -11 300 14 2108 95 15 0 chr6 88634642 88634915 -100644639 + AluSc SINE Alu 1 277 -32 348 24 0 0 chr6 88634915 88634956 -100644598 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1565 186 0 7 chr6 88634956 88635236 -100644318 + AluJb SINE Alu 2 279 -33 243 0 0 0 chr6 88635236 88635263 -100644291 + (CA)n Simple_repeat Simple_repeat 1 27 0 395 309 48 30 chr6 88635552 88635717 -100643837 - MIR SINE MIR -50 212 45 2271 111 0 0 chr6 88635960 88636258 -100643296 + AluSx SINE Alu 1 298 -14 6798 178 11 6 chr6 88636462 88637598 -100641956 + L1MA3 LINE L1 14 1155 -6410 1272 186 21 7 chr6 88637596 88637876 -100641678 + L1MA3 LINE L1 4636 4919 -2646 * 1699 205 55 5 chr6 88637887 88638307 -100641247 + L1PA15 LINE L1 4466 4906 -1240 5457 143 7 3 chr6 88638309 88639496 -100640058 + L1PA15 LINE L1 4982 6161 -4 8538 174 30 7 chr6 88639612 88642061 -100637493 + L1MA3 LINE L1 4913 7419 -305 1101 212 164 24 chr6 88642355 88642728 -100636826 - MLT1D LTR MaLR 0 505 81 5848 95 31 0 chr6 88642731 88643706 -100635848 - L1PB1 LINE L1 0 6151 5175 234 0 0 0 chr6 88643706 88643732 -100635822 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 300 255 32 32 chr6 88643745 88643839 -100635715 - MLT1D LTR MaLR -411 94 1 336 331 143 19 chr6 88643933 88644347 -100635207 + MLT1L LTR MaLR 145 609 -6 259 313 175 17 chr6 88644350 88644590 -100634964 - L2 LINE L2 -517 2797 2520 1022 294 67 25 chr6 88644611 88645047 -100634507 + HAL1 LINE L1 10 463 -2044 740 274 15 0 chr6 88645065 88645266 -100634288 + HAL1 LINE L1 673 876 -1631 259 218 225 21 chr6 88645490 88645632 -100633922 + HAL1 LINE L1 2006 2176 -331 224 308 0 13 chr6 88645655 88645733 -100633821 + GA-rich Low_complexity Low_complexity 3 79 0 338 310 158 0 chr6 88645797 88645955 -100633599 + HAL1 LINE L1 2325 2507 0 1591 174 7 28 chr6 88645960 88646289 -100633265 + AluJb SINE Alu 1 323 0 981 312 65 49 chr6 88646315 88646870 -100632684 - L2 LINE L2 -818 2496 1933 2083 180 98 11 chr6 88647633 88648100 -100631454 + LTR22 LTR ERVK 2 509 0 22 35 0 0 chr6 88648419 88648448 -100631106 + AT_rich Low_complexity Low_complexity 1 29 0 1352 201 0 42 chr6 88648476 88648739 -100630815 - AluJo SINE Alu -60 252 1 467 312 147 0 chr6 88648961 88649118 -100630436 + MER5A DNA MER1_type 4 183 -6 382 182 80 0 chr6 88649167 88649255 -100630299 - MIR SINE MIR -46 216 122 185 53 53 79 chr6 88649263 88649301 -100630253 - MIR SINE MIR -63 145 109 186 71 0 0 chr6 88651314 88651342 -100628212 + (CAAAT)n Simple_repeat Simple_repeat 5 32 0 201 286 205 18 chr6 88651621 88651733 -100627821 + MER5B DNA MER1_type 46 178 0 28 0 0 0 chr6 88653618 88653646 -100625908 + AT_rich Low_complexity Low_complexity 1 28 0 553 294 102 15 chr6 88654046 88654457 -100625097 + L1M4 LINE L1 4083 4529 -1617 2261 276 48 31 chr6 88654503 88655402 -100624152 + L1M3a LINE L1 1131 1905 -4864 1791 55 30 0 chr6 88655388 88655623 -100623931 - L1PA4 LINE L1 -2333 3813 3572 * 12717 45 11 0 chr6 88655623 88657950 -100621604 + L1PA4 LINE L1 3819 6154 -1 763 206 0 0 chr6 88657970 88658111 -100621443 + L1PB4 LINE L1 6016 6156 0 486 258 30 30 chr6 88658102 88658269 -100621285 + L1M3a LINE L1 2163 2330 -4519 3755 168 23 72 chr6 88658292 88658354 -100621200 - L1MA8 LINE L1 -4 6287 6224 7487 20 1 0 chr6 88658354 88659234 -100620320 + L1PA2 LINE L1 5273 6153 -2 3755 168 23 72 chr6 88659234 88660068 -100619486 - L1MA8 LINE L1 -67 6224 5435 1324 195 6 51 chr6 88660061 88660259 -100619295 - L1MA8 LINE L1 -1036 5110 4930 * 2322 85 0 0 chr6 88660259 88660553 -100619001 - AluY SINE Alu -17 294 1 1324 195 6 51 chr6 88660553 88660667 -100618887 - L1MA8 LINE L1 -1216 4930 4812 * 9908 211 53 74 chr6 88660666 88661823 -100617731 + L1M1 LINE L1 2714 3893 -3672 2312 71 3 0 chr6 88661823 88662119 -100617435 + AluY SINE Alu 1 297 -14 9908 211 53 74 chr6 88662119 88664966 -100614588 + L1M1 LINE L1 3893 6652 -913 1920 215 33 71 chr6 88664966 88665487 -100614067 - MLT2B3 LTR ERVL -53 501 1 21 0 0 0 chr6 88665550 88665571 -100613983 + AT_rich Low_complexity Low_complexity 1 21 0 350 213 56 19 chr6 88665905 88666013 -100613541 + L1M3a LINE L1 2833 2944 -3904 183 100 0 0 chr6 88666013 88666043 -100613511 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 41643 53 8 0 chr6 88666043 88672143 -100607411 - L1PA3 LINE L1 -10 6145 1 449 351 29 17 chr6 88672175 88672349 -100607205 + MER5B DNA MER1_type 2 177 -1 23 0 0 0 chr6 88672587 88672610 -100606944 + AT_rich Low_complexity Low_complexity 1 23 0 499 357 92 14 chr6 88673289 88673572 -100605982 + L3b LINE CR1 1254 1558 -25 1087 211 10 0 chr6 88674322 88674521 -100605033 + MER58A DNA MER1_type 1 201 -23 350 308 20 20 chr6 88675246 88675392 -100604162 - MER5B DNA MER1_type -32 146 1 468 208 19 9 chr6 88675588 88675694 -100603860 - MER94 DNA DNA 0 134 28 266 321 107 14 chr6 88675749 88675889 -100603665 - L2 LINE L2 -513 2801 2649 193 349 134 34 chr6 88675912 88676181 -100603373 - L2 LINE L2 -999 2315 2020 1436 258 78 0 chr6 88676216 88676611 -100602943 - LTR16A LTR ERVL 0 450 25 194 344 33 0 chr6 88676673 88676734 -100602820 - L2 LINE L2 0 3272 3210 248 222 103 48 chr6 88676797 88676923 -100602631 - L2 LINE L2 -1358 1956 1824 182 279 38 76 chr6 88677169 88677248 -100602306 + MER5A DNA MER1_type 86 161 -28 399 240 10 0 chr6 88677352 88677456 -100602098 - MER53 DNA DNA -84 105 1 501 286 113 42 chr6 88678697 88678910 -100600644 + MIR SINE MIR 3 230 -32 1987 106 4 0 chr6 88679066 88679330 -100600224 + AluSc SINE Alu 31 295 -14 183 42 0 0 chr6 88679932 88679956 -100599598 + (ATG)n Simple_repeat Simple_repeat 2 25 0 1629 223 94 26 chr6 88680314 88680772 -100598782 - MER110 LTR ERV1 0 491 3 271 7 2 47 chr6 88681046 88681096 -100598458 - L1PA6 LINE L1 0 6154 6107 23 0 0 0 chr6 88681284 88681307 -100598247 + AT_rich Low_complexity Low_complexity 1 23 0 447 324 32 27 chr6 88681689 88681908 -100597646 - MER90 LTR ERV1 -105 509 290 2761 97 71 9 chr6 88682058 88682493 -100597061 + MER4C LTR ERV1 3 464 -1 2175 31 0 0 chr6 88684010 88684266 -100595288 - L1PA5 LINE L1 -329 5825 5570 250 228 19 136 chr6 88684359 88684521 -100595033 - L1ME3A LINE L1 -204 5966 5824 276 30 0 0 chr6 88684550 88684583 -100594971 + (TG)n Simple_repeat Simple_repeat 2 34 0 31 71 0 30 chr6 88685166 88685265 -100594289 + AT_rich Low_complexity Low_complexity 1 96 0 1412 180 27 53 chr6 88686271 88686571 -100592983 - AluJo SINE Alu -20 292 1 1920 116 3 55 chr6 88687779 88688106 -100591448 - AluSx SINE Alu -2 310 1 247 298 11 11 chr6 88688171 88688265 -100591289 - L1MDa LINE L1 -4600 1940 1847 451 300 19 9 chr6 88688456 88688666 -100590888 - L1MDa LINE L1 -4971 1559 1348 27 0 0 0 chr6 88688784 88688811 -100590743 + AT_rich Low_complexity Low_complexity 1 27 0 2290 90 3 13 chr6 88689054 88689364 -100590190 + AluSp SINE Alu 1 307 -6 792 187 180 81 chr6 88689699 88690121 -100589433 + LTR37B LTR ERV1 1 464 -4 2043 109 0 11 chr6 88690164 88690449 -100589105 - AluY SINE Alu -16 295 14 216 217 67 17 chr6 88690522 88690582 -100588972 + L2 LINE L2 3210 3272 0 1698 103 11 42 chr6 88691642 88691905 -100587649 - AluSx SINE Alu -22 290 36 281 365 58 6 chr6 88691937 88692093 -100587461 + MIR SINE MIR 86 249 -13 284 327 164 14 chr6 88693241 88693449 -100586105 - L3 LINE CR1 -755 822 584 747 355 41 25 chr6 88693719 88694234 -100585320 - HERVL LTR ERVL -2254 3400 2878 759 278 20 37 chr6 88694260 88694505 -100585049 - HERVL LTR ERVL -3202 2562 2322 2508 68 0 3 chr6 88694619 88694930 -100584624 + AluY SINE Alu 1 310 -1 301 329 77 28 chr6 88694987 88695130 -100584424 - LTR67 LTR ERVL -293 264 115 21 36 0 0 chr6 88695342 88695370 -100584184 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 88695513 88695541 -100584013 + AT_rich Low_complexity Low_complexity 1 28 0 203 241 46 46 chr6 88695620 88695707 -100583847 - MIR SINE MIR -12 250 164 2201 148 0 0 chr6 88695775 88696100 -100583454 + MER1B DNA MER1_type 1 325 -14 465 307 11 17 chr6 88696965 88697144 -100582410 + MER5B DNA MER1_type 1 178 0 396 333 26 13 chr6 88697915 88698068 -100581486 - MIR SINE MIR -70 192 38 256 146 0 0 chr6 88698141 88698189 -100581365 - L1 LINE L1 -2374 3772 3725 * 5034 148 46 52 chr6 88698186 88699608 -100579946 + L1MA4 LINE L1 4882 6295 -5 291 257 0 0 chr6 88699602 88699672 -100579882 + L1ME3 LINE L1 6091 6160 -2 * 458 277 88 6 chr6 88700122 88700281 -100579273 - MIR SINE MIR -62 200 29 25 31 0 0 chr6 88700914 88700946 -100578608 + AT_rich Low_complexity Low_complexity 1 32 0 3130 68 19 0 chr6 88701159 88701585 -100577969 - L1PA8 LINE L1 0 6172 5739 26 64 0 0 chr6 88701834 88701881 -100577673 + AT_rich Low_complexity Low_complexity 1 47 0 269 152 27 71 chr6 88701912 88702024 -100577530 + (TATAA)n Simple_repeat Simple_repeat 5 111 0 1837 151 22 151 chr6 88702062 88702618 -100576936 - LTR22B LTR ERVK -3 489 6 45 34 0 0 chr6 88702620 88702679 -100576875 + AT_rich Low_complexity Low_complexity 1 59 0 1153 130 0 0 chr6 88702754 88702914 -100576640 + AluSp SINE Alu 137 299 -14 279 0 0 0 chr6 88702914 88702945 -100576609 + (CA)n Simple_repeat Simple_repeat 2 32 0 1153 130 0 0 chr6 88702945 88702961 -100576593 + AluSp SINE Alu 298 313 0 241 283 26 35 chr6 88703202 88703315 -100576239 + L1M1 LINE L1 5641 5752 -550 25 90 0 0 chr6 88703475 88703542 -100576012 + AT_rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr6 88703572 88703596 -100575958 + AT_rich Low_complexity Low_complexity 1 24 0 398 225 136 85 chr6 88704814 88705072 -100574482 + L1MC5 LINE L1 7276 7546 -415 465 228 0 0 chr6 88705072 88705151 -100574403 + MER58A DNA MER1_type 1 79 -28 269 196 0 0 chr6 88705184 88705240 -100574314 + MER58A DNA MER1_type 169 224 0 307 253 47 37 chr6 88705242 88705432 -100574122 + L1MC5 LINE L1 7541 7732 -229 294 307 72 13 chr6 88705454 88705607 -100573947 + MIR SINE MIR 101 262 0 21 57 0 0 chr6 88706114 88706149 -100573405 + AT_rich Low_complexity Low_complexity 1 35 0 2238 95 3 7 chr6 88706160 88706456 -100573098 + AluSq SINE Alu 1 295 -18 232 302 94 19 chr6 88706962 88707068 -100572486 + L1ME LINE L1 341 454 -5616 310 173 192 0 chr6 88707249 88707323 -100572231 + MER58A DNA MER1_type 35 128 0 450 256 23 63 chr6 88707323 88707624 -100571930 + L1ME LINE L1 547 835 -5235 1423 251 57 88 chr6 88707717 88708172 -100571382 + L1ME LINE L1 847 1262 -4818 483 218 0 0 chr6 88708172 88708282 -100571272 - L1PA16 LINE L1 -16 6150 6041 1423 251 57 88 chr6 88708282 88708724 -100570830 + L1ME LINE L1 1262 1716 -4364 180 0 0 0 chr6 88708855 88708875 -100570679 + (TA)n Simple_repeat Simple_repeat 2 21 0 2043 137 0 7 chr6 88708875 88709182 -100570372 - AluSq SINE Alu -8 305 1 21 0 0 0 chr6 88709262 88709283 -100570271 + AT_rich Low_complexity Low_complexity 1 21 0 2431 273 68 54 chr6 88709290 88710656 -100568898 + L1ME LINE L1 2228 3612 -2468 25 75 0 0 chr6 88710800 88710853 -100568701 + AT_rich Low_complexity Low_complexity 1 53 0 330 318 82 0 chr6 88711413 88711523 -100568031 + MIR3 SINE MIR 3 121 -87 407 373 51 70 chr6 88712460 88712873 -100566681 - L1MEd LINE L1 -5601 518 114 861 94 0 0 chr6 88713652 88713769 -100565785 - AluY SINE Alu -11 300 184 577 0 0 0 chr6 88717659 88717725 -100561829 - L1P LINE L1 -1658 4488 4423 7427 37 5 0 chr6 88717725 88719336 -100560218 + L1PA5 LINE L1 4540 6154 0 22 70 0 0 chr6 88719567 88719610 -100559944 + AT_rich Low_complexity Low_complexity 1 43 0 533 219 0 25 chr6 88719853 88719972 -100559582 - Charlie1a DNA MER1_type -1276 179 64 340 213 0 0 chr6 88720008 88720083 -100559471 - MLT1A1 LTR MaLR 0 365 291 214 178 0 0 chr6 88720087 88720132 -100559422 + T-rich Low_complexity Low_complexity 1 45 0 1375 165 91 15 chr6 88720132 88720408 -100559146 - MLT1A1 LTR MaLR -64 403 4 2091 105 7 10 chr6 88720455 88720761 -100558793 + AluSp SINE Alu 1 305 -8 279 325 17 8 chr6 88720820 88720937 -100558617 - MIR3 SINE MIR -2 206 89 34 0 0 0 chr6 88722147 88722181 -100557373 + AT_rich Low_complexity Low_complexity 1 34 0 387 297 183 18 chr6 88722382 88722601 -100556953 - MIR SINE MIR -2 260 6 2030 114 0 20 chr6 88722708 88723005 -100556549 + AluSx SINE Alu 3 293 -19 481 192 78 70 chr6 88723467 88723653 -100555901 + L1MA7 LINE L1 6111 6306 -6 225 198 99 49 chr6 88723794 88723875 -100555679 + L2 LINE L2 2765 2849 -465 30 27 0 0 chr6 88726007 88726044 -100553510 + AT_rich Low_complexity Low_complexity 1 37 0 5936 71 8 12 chr6 88726541 88727339 -100552215 - L1PA8A LINE L1 -6 6125 5332 187 284 17 52 chr6 88727723 88727807 -100551747 - MIR SINE MIR -70 192 114 210 119 24 24 chr6 88728313 88728355 -100551199 + (TA)n Simple_repeat Simple_repeat 2 43 0 268 329 59 37 chr6 88728368 88728727 -100550827 + L2 LINE L2 2526 3098 -215 438 82 24 94 chr6 88728872 88728957 -100550597 + MADE1 DNA Mariner 2 80 0 450 308 192 6 chr6 88729311 88729493 -100550061 + MIR SINE MIR 32 247 -15 42603 50 6 3 chr6 88729731 88735874 -100543680 + L1PA4 LINE L1 1 6154 -1 240 35 0 0 chr6 88736149 88736178 -100543376 + (TA)n Simple_repeat Simple_repeat 1 29 0 606 293 100 0 chr6 88736690 88736929 -100542625 - L2 LINE L2 0 3313 3051 1750 228 2 47 chr6 88736939 88737342 -100542212 + MLT1B LTR MaLR 6 390 0 260 361 20 64 chr6 88737342 88737544 -100542010 - L2 LINE L2 -258 3055 2863 1648 193 57 9 chr6 88737735 88738067 -100541487 + MER47B DNA MER2_type 1 348 -70 314 319 71 77 chr6 88738750 88738932 -100540622 - MIR3 SINE MIR -9 199 19 1953 90 11 0 chr6 88739080 88739357 -100540197 + L1PA16 LINE L1 5878 6157 -9 35 24 0 0 chr6 88739357 88739399 -100540155 + AT_rich Low_complexity Low_complexity 1 42 0 834 216 6 6 chr6 88739948 88740119 -100539435 + FAM SINE Alu 1 171 -4 28 0 0 0 chr6 88740204 88740232 -100539322 + AT_rich Low_complexity Low_complexity 1 28 0 13097 30 0 1 chr6 88740232 88742583 -100536971 - L1PA3 LINE L1 -3 6152 3825 261 331 63 16 chr6 88742916 88743043 -100536511 + L2 LINE L2 3138 3270 -2 197 271 101 70 chr6 88743806 88743842 -100535712 + MIR SINE MIR 124 157 -105 1793 201 39 18 chr6 88743842 88744230 -100535324 + MSTD LTR MaLR 1 396 0 197 271 101 70 chr6 88744230 88744322 -100535232 + MIR SINE MIR 157 256 -6 180 77 0 0 chr6 88744891 88744917 -100534637 + (TG)n Simple_repeat Simple_repeat 1 26 0 26 0 0 0 chr6 88744917 88744943 -100534611 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr6 88745662 88745683 -100533871 + AT_rich Low_complexity Low_complexity 1 21 0 257 237 53 0 chr6 88746389 88746465 -100533089 - MER116 DNA Mariner 0 80 1 30 77 0 0 chr6 88746804 88746869 -100532685 + AT_rich Low_complexity Low_complexity 1 65 0 210 318 19 56 chr6 88747741 88747848 -100531706 + L2 LINE L2 3129 3231 -82 1695 60 0 5 chr6 88747871 88748086 -100531468 - AluY SINE Alu -3 308 95 22 56 0 0 chr6 88748573 88748609 -100530945 + AT_rich Low_complexity Low_complexity 1 36 0 607 297 138 57 chr6 88749556 88750011 -100529543 - MER21B LTR ERV1 -136 727 236 8370 176 26 29 chr6 88750823 88751367 -100528187 - L1MA4 LINE L1 -6 6294 5750 243 0 0 0 chr6 88751367 88751394 -100528160 + (TA)n Simple_repeat Simple_repeat 2 28 0 8370 176 26 29 chr6 88751394 88752833 -100526721 - L1MA4 LINE L1 -550 5750 4321 1768 182 0 26 chr6 88752833 88753140 -100526414 - AluJb SINE Alu -13 299 1 8370 176 26 29 chr6 88753140 88753827 -100525727 - L1MA4 LINE L1 -1979 4321 3634 7442 29 8 0 chr6 88803835 88805402 -100474152 + L1PA4 LINE L1 4580 6153 -2 684 206 0 23 chr6 88805412 88805543 -100474011 + MER5A DNA MER1_type 61 188 -1 677 216 0 15 chr6 88806626 88806760 -100472794 + FLAM_C SINE Alu 2 133 0 626 251 77 24 chr6 88807162 88807369 -100472185 - MIR SINE MIR -1 261 44 25 0 0 0 chr6 88808028 88808053 -100471501 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr6 88808681 88808720 -100470834 + AT_rich Low_complexity Low_complexity 1 39 0 820 235 15 49 chr6 88808827 88809076 -100470478 - MIR SINE MIR -10 252 18 300 283 0 58 chr6 88809794 88809932 -100469622 + LTR67 LTR ERVL 428 557 0 221 287 167 37 chr6 88810272 88810380 -100469174 - MIR3 SINE MIR -30 178 57 2122 103 7 17 chr6 88810446 88810748 -100468806 - AluY SINE Alu -9 302 4 355 306 125 28 chr6 88812888 88813104 -100466450 + L1ME3A LINE L1 5614 5850 -320 24 53 0 0 chr6 88813145 88813183 -100466371 + AT_rich Low_complexity Low_complexity 1 38 0 192 200 0 0 chr6 88813410 88813450 -100466104 + GA-rich Low_complexity Low_complexity 1 40 0 200 326 116 30 chr6 88815121 88815354 -100464200 + L2 LINE L2 1276 1528 -1786 200 219 47 0 chr6 88815562 88815626 -100463928 + MIR SINE MIR 140 206 -56 270 337 69 11 chr6 88815636 88815897 -100463657 + L2 LINE L2 1931 2206 -1108 412 333 78 22 chr6 88815915 88816298 -100463256 - LTR67 LTR ERVL 0 557 74 519 213 46 0 chr6 88816552 88816660 -100462894 + MER67A LTR ERV1 431 543 0 531 340 66 67 chr6 88816677 88817137 -100462417 - ERVL LTR ERVL -2218 3546 3086 2206 109 0 3 chr6 88817137 88817431 -100462123 + AluSg SINE Alu 1 293 -17 531 340 66 67 chr6 88817431 88817641 -100461913 - ERVL LTR ERVL -2678 3086 2877 1231 169 20 0 chr6 88817641 88817842 -100461712 - MER70A LTR ERVL 0 472 268 464 281 32 42 chr6 88818790 88819007 -100460547 - LTR67 LTR ERVL -3 554 340 302 314 16 32 chr6 88819139 88819263 -100460291 - LTR67 LTR ERVL -350 207 86 615 315 53 68 chr6 88819333 88819746 -100459808 + MLT1I LTR MaLR 1 407 -2 359 354 32 53 chr6 88819747 88819993 -100459561 + L2 LINE L2 2250 2490 -824 2286 123 0 0 chr6 88820286 88820594 -100458960 + AluSc SINE Alu 1 308 -1 2294 199 49 38 chr6 88822177 88822729 -100456825 + MER74A LTR ERVL 1 558 0 4897 138 10 17 chr6 88822837 88823655 -100455899 - L1PA15 LINE L1 -1 6164 5353 203 0 0 36 chr6 88823674 88823702 -100455852 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4268 234 42 3 chr6 88823708 88824822 -100454732 - L1M LINE L1 -783 5363 4220 4085 214 10 26 chr6 88824821 88825804 -100453750 + L1P LINE L1 3261 4227 -1919 * 1371 223 32 7 chr6 88826437 88826720 -100452834 + MLT1A1 LTR MaLR 1 290 -75 2374 124 39 8 chr6 88827005 88827367 -100452187 + THE1C LTR MaLR 1 373 -2 6560 121 59 78 chr6 88827372 88828617 -100450937 + THE1C-int LTR MaLR 1 1222 -358 619 210 8 0 chr6 88828684 88828808 -100450746 - L1 LINE L1 -2283 3863 3739 6668 149 16 8 chr6 88828834 88828923 -100450631 + L1MA2 LINE L1 4116 4203 -2101 1787 152 142 8 chr6 88828923 88829297 -100450257 + MSTA LTR MaLR 5 428 0 8106 165 31 36 chr6 88829299 88830885 -100448669 + MSTA-int LTR MaLR 3 1580 0 1962 150 134 8 chr6 88830885 88831265 -100448289 + MSTA LTR MaLR 1 428 0 6668 149 16 8 chr6 88831265 88833346 -100446208 + L1MA2 LINE L1 4202 6304 0 884 317 56 41 chr6 88833380 88833791 -100445763 - L2 LINE L2 -74 3239 2813 1630 186 34 0 chr6 88833791 88834082 -100445472 + AluSx SINE Alu 1 301 -11 884 317 56 41 chr6 88834082 88834311 -100445243 - L2 LINE L2 -500 2813 2589 21 0 0 0 chr6 88834547 88834568 -100444986 + AT_rich Low_complexity Low_complexity 1 21 0 1392 287 115 25 chr6 88835574 88836374 -100443180 + L2 LINE L2 2412 3292 -21 23 33 0 0 chr6 88836432 88836462 -100443092 + AT_rich Low_complexity Low_complexity 1 30 0 6514 214 36 9 chr6 88836474 88838150 -100441404 - L1PA16 LINE L1 -43 6123 4494 2220 128 8 3 chr6 88838150 88838501 -100441053 + THE1A LTR MaLR 1 353 -2 11235 106 8 1 chr6 88838503 88840073 -100439481 + THE1A-int LTR MaLR 1 1580 0 2214 139 11 3 chr6 88840073 88840425 -100439129 + THE1A LTR MaLR 1 355 0 6514 214 36 9 chr6 88840425 88841236 -100438318 - L1PA16 LINE L1 -1671 4495 3562 277 293 30 40 chr6 88841531 88841630 -100437924 + MIR3 SINE MIR 88 185 -23 28 71 0 0 chr6 88841698 88841754 -100437800 + AT_rich Low_complexity Low_complexity 1 56 0 327 156 35 23 chr6 88841756 88841929 -100437625 + (TATAA)n Simple_repeat Simple_repeat 1 175 0 23 0 0 0 chr6 88841929 88841952 -100437602 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr6 88842792 88842816 -100436738 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr6 88843104 88843139 -100436415 + AT_rich Low_complexity Low_complexity 1 35 0 243 311 129 36 chr6 88843800 88843993 -100435561 + L3b LINE CR1 1136 1346 -237 322 248 215 20 chr6 88844028 88844177 -100435377 + MER5B DNA MER1_type 1 178 0 35 92 0 0 chr6 88844991 88845089 -100434465 + AT_rich Low_complexity Low_complexity 1 98 0 215 308 128 8 chr6 88845124 88845241 -100434313 - MIR SINE MIR -76 186 56 685 281 51 5 chr6 88845497 88845693 -100433861 - MIR SINE MIR -10 252 48 21 0 0 0 chr6 88846123 88846144 -100433410 + AT_rich Low_complexity Low_complexity 1 21 0 446 119 0 0 chr6 88846541 88846608 -100432946 - L1PA16 LINE L1 -1982 4164 4098 * 5507 185 18 8 chr6 88846604 88848603 -100430951 + L1PA16 LINE L1 4145 6162 -4 2782 254 72 33 chr6 88848883 88850750 -100428804 + L1MCb LINE L1 624 2418 -4146 2001 113 0 4 chr6 88850750 88851024 -100428530 + AluSx SINE Alu 5 277 -35 225 0 0 0 chr6 88851025 88851050 -100428504 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2782 254 72 33 chr6 88851050 88852011 -100427543 + L1MCb LINE L1 2417 3719 -2845 302 123 0 18 chr6 88852039 88852096 -100427458 + L1PB1 LINE L1 6095 6150 -1 782 181 90 13 chr6 88852147 88852302 -100427252 - MER58A DNA MER1_type -32 192 26 1701 181 24 0 chr6 88852381 88852673 -100426881 + AluJo SINE Alu 1 299 -13 214 179 107 36 chr6 88853028 88853084 -100426470 - L2 LINE L2 -1 3312 3253 3357 256 60 32 chr6 88853117 88854476 -100425078 + L1MCb LINE L1 3788 5183 -1381 1948 233 44 3 chr6 88854488 88855073 -100424481 + L1MC3 LINE L1 6465 7104 -681 246 266 75 11 chr6 88855078 88855172 -100424382 + MLT1F1 LTR MaLR 48 147 -420 739 234 6 23 chr6 88855172 88855343 -100424211 + L1MC3 LINE L1 7213 7380 -405 1314 160 58 14 chr6 88855354 88855629 -100423925 + L1MC3 LINE L1 7477 7763 -22 4769 161 4 0 chr6 88855957 88856769 -100422785 - L1P LINE L1 -3613 2533 1719 5960 86 55 1 chr6 88856769 88857671 -100421883 + L1PA11 LINE L1 5224 6172 -2 324 0 0 0 chr6 88857999 88858035 -100421519 + (TC)n Simple_repeat Simple_repeat 1 36 0 240 208 31 0 chr6 88859433 88859529 -100420025 + (TA)n Simple_repeat Simple_repeat 2 100 0 203 250 0 0 chr6 88859765 88859809 -100419745 + MIR SINE MIR 219 262 0 215 362 0 0 chr6 88860287 88860356 -100419198 + L2 LINE L2 3245 3313 0 7973 218 51 15 chr6 88860444 88864300 -100415254 + L1MA5 LINE L1 1 4224 -2984 1157 181 28 221 chr6 88864353 88865145 -100414409 + L1MA5 LINE L1 6542 7180 -182 318 220 88 0 chr6 88865143 88865234 -100414320 + L1MA4A LINE L1 6182 6280 -23 * 2178 106 3 34 chr6 88865750 88866071 -100413483 + AluSp SINE Alu 2 312 -1 418 256 66 22 chr6 88866537 88866674 -100412880 - MLT1K LTR MaLR -6 582 440 271 302 0 0 chr6 88866677 88866740 -100412814 + polypyrimidine Low_complexity Low_complexity 3 65 0 532 214 6 6 chr6 88866742 88866901 -100412653 + C-rich Low_complexity Low_complexity 4 162 0 619 294 62 51 chr6 88866918 88867210 -100412344 - MLT1K LTR MaLR -163 425 131 42005 52 5 4 chr6 88867340 88873452 -100406102 - L1PA4 LINE L1 -11 6144 26 365 306 20 0 chr6 88873527 88873625 -100405929 - MER5A DNA MER1_type -86 103 4 670 175 45 19 chr6 88875482 88875636 -100403918 + MLT2B3 LTR ERVL 1 158 -396 191 298 11 64 chr6 88875676 88875770 -100403784 + MIR SINE MIR 124 212 -50 1711 221 23 26 chr6 88875816 88876206 -100403348 + MLT2B3 LTR ERVL 146 534 -20 198 71 0 0 chr6 88876210 88876238 -100403316 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 207 263 61 70 chr6 88876401 88876515 -100403039 + MIR SINE MIR 100 212 -50 1985 189 54 7 chr6 88876832 88877239 -100402315 - MSTB LTR MaLR 0 426 1 432 281 23 35 chr6 88878156 88878327 -100401227 + MLT1J1 LTR MaLR 246 414 -32 238 204 0 20 chr6 88878373 88878422 -100401132 + MLT1J2 LTR MaLR 403 450 0 1603 197 30 0 chr6 88878543 88878842 -100400712 + AluJo SINE Alu 1 308 -4 704 171 0 0 chr6 88879087 88879198 -100400356 - FLAM_C SINE Alu -32 111 1 1833 253 30 26 chr6 88879822 88880313 -100399241 - LTR40a LTR ERVL -9 510 18 305 219 56 6 chr6 88880375 88880535 -100399019 + (TA)n Simple_repeat Simple_repeat 1 168 0 345 331 25 19 chr6 88880608 88880765 -100398789 + MIR SINE MIR 105 262 0 8167 164 18 121 chr6 88881592 88883869 -100395685 + L1P LINE L1 12 2053 -4093 2289 185 14 42 chr6 88883872 88884605 -100394949 - L1M2 LINE L1 -752 5539 4815 2378 88 0 0 chr6 88885102 88885397 -100394157 + AluSc SINE Alu 3 297 -12 250 255 98 52 chr6 88886690 88886843 -100392711 - MLT1J2 LTR MaLR -256 194 35 284 175 16 0 chr6 88887173 88887236 -100392318 + CT-rich Low_complexity Low_complexity 1 64 0 1112 250 56 43 chr6 88888006 88888453 -100391101 + MLT1C LTR MaLR 1 464 -3 186 71 0 0 chr6 88888830 88888858 -100390696 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2335 109 0 0 chr6 88888944 88889257 -100390297 + AluSq SINE Alu 1 313 0 260 241 13 38 chr6 88890160 88890239 -100389315 + MIR SINE MIR 112 188 -74 21 36 0 0 chr6 88890804 88890832 -100388722 + AT_rich Low_complexity Low_complexity 1 28 0 3924 190 25 25 chr6 88891469 88891869 -100387685 - MER54B LTR ERVL -2 791 389 2153 107 0 35 chr6 88891869 88892187 -100387367 + AluSc SINE Alu 1 307 -2 3924 190 25 25 chr6 88892187 88892577 -100386977 - MER54B LTR ERVL -403 390 1 184 379 31 19 chr6 88892730 88892891 -100386663 + L2 LINE L2 1951 2113 -1201 1167 277 67 17 chr6 88893172 88893845 -100385709 + L1ME3A LINE L1 5246 5956 -214 771 245 152 59 chr6 88894123 88894625 -100384929 + MLT1H1 LTR MaLR 1 555 0 28 29 0 0 chr6 88894646 88894681 -100384873 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr6 88894704 88894738 -100384816 + AT_rich Low_complexity Low_complexity 1 34 0 238 304 30 67 chr6 88894781 88894916 -100384638 + L2 LINE L2 2258 2387 -927 184 310 69 0 chr6 88895030 88895088 -100384466 - L2 LINE L2 -4 3268 3207 1511 182 65 89 chr6 88896649 88897081 -100382473 + MER66A LTR ERV1 97 478 0 305 205 20 57 chr6 88897238 88897327 -100382227 + MIR SINE MIR 66 152 -63 6635 65 2 0 chr6 88897365 88898218 -100381336 + L1PA8 LINE L1 5317 6171 -1 223 371 28 42 chr6 88900317 88900460 -100379094 + MIR SINE MIR 68 208 -54 1738 173 10 59 chr6 88900505 88900985 -100378569 + MER89 LTR ERV1 1 554 -5 29 28 0 0 chr6 88901748 88901784 -100377770 + AT_rich Low_complexity Low_complexity 1 36 0 33 0 0 0 chr6 88903429 88903462 -100376092 + AT_rich Low_complexity Low_complexity 1 33 0 232 272 37 59 chr6 88904017 88904153 -100375401 - L3 LINE CR1 -354 1223 1091 182 343 112 48 chr6 88904248 88904516 -100375038 - L3 LINE CR1 -677 900 616 27 29 0 0 chr6 88904906 88904940 -100374614 + AT_rich Low_complexity Low_complexity 1 34 0 627 316 12 0 chr6 88905168 88905339 -100374215 + LTR33 LTR ERVL 6 178 -343 235 328 96 17 chr6 88905443 88905620 -100373934 + LTR33 LTR ERVL 329 519 -2 334 336 96 18 chr6 88905622 88905842 -100373712 - L1MC/D LINE L1 -2051 5757 5521 5746 132 96 67 chr6 88905875 88907123 -100372431 + pTR5 LTR ERV1 742 2025 -413 375 194 31 20 chr6 88907123 88907221 -100372333 + LTR30 LTR ERV1 544 642 -80 1389 109 50 9 chr6 88907224 88907444 -100372110 + pTR5 LTR ERV1 172 400 -2038 1859 174 59 28 chr6 88907877 88908416 -100371138 - MLT2A2 LTR ERVL 0 554 1 2688 227 38 80 chr6 88908483 88909805 -100369749 - L1ME2 LINE L1 -9 6089 4824 559 143 250 0 chr6 88909895 88910098 -100369456 - Tigger3(Golem) DNA MER2_type -178 2851 2566 1006 256 54 0 chr6 88910098 88910415 -100369139 - L1ME2 LINE L1 -1407 4673 4340 4699 147 35 13 chr6 88910586 88910752 -100368802 - Tigger3b DNA MER2_type -1804 1224 1063 2210 119 0 0 chr6 88910752 88911055 -100368499 - AluY SINE Alu -8 303 1 4699 147 35 13 chr6 88911055 88912002 -100367552 - Tigger3b DNA MER2_type -1965 1063 2 236 238 32 0 chr6 88912008 88912071 -100367483 - L1ME2 LINE L1 -5475 595 531 241 255 66 66 chr6 88912610 88912716 -100366838 - L1ME2 LINE L1 -5964 106 1 606 300 35 22 chr6 88914666 88914896 -100364658 - MIR SINE MIR 0 262 30 243 61 0 0 chr6 88915854 88915887 -100363667 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 2018 258 35 34 chr6 88916078 88916732 -100362822 - L1ME1 LINE L1 -10 6156 5502 2060 168 63 29 chr6 88916735 88917145 -100362409 - MSTB LTR MaLR -2 424 1 7984 181 55 26 chr6 88917145 88918714 -100360840 - MSTB-int LTR MaLR 0 1651 37 1891 159 81 25 chr6 88918714 88919072 -100360482 - MSTB LTR MaLR -48 378 1 747 236 121 20 chr6 88919072 88919468 -100360086 - L1ME1 LINE L1 -737 5505 5071 1914 164 65 8 chr6 88919469 88919852 -100359702 + L1MA7 LINE L1 5854 6258 -33 1228 177 26 93 chr6 88919882 88920193 -100359361 - AluJo SINE Alu -12 290 1 1784 234 89 67 chr6 88920249 88921195 -100358359 - L1ME1 LINE L1 -1099 5047 4081 1777 144 45 63 chr6 88921197 88921579 -100357975 - THE1C LTR MaLR 0 375 1 577 172 57 0 chr6 88921579 88921701 -100357853 - THE1C-int LTR MaLR 0 1580 1452 2440 110 9 0 chr6 88921742 88922088 -100357466 - THE1C-int LTR MaLR -1231 349 1 1736 138 73 62 chr6 88922090 88922459 -100357095 - THE1C LTR MaLR -2 373 1 491 253 89 9 chr6 88922459 88922684 -100356870 - L1ME1 LINE L1 -2063 4083 3841 8769 187 31 21 chr6 88922690 88925484 -100354070 - L1PB4 LINE L1 -3 6153 3337 2070 269 88 44 chr6 88925483 88926649 -100352905 - L1ME1 LINE L1 -2291 3855 2639 * 21 0 0 0 chr6 88926729 88926750 -100352804 + AT_rich Low_complexity Low_complexity 1 21 0 665 262 67 19 chr6 88926771 88927084 -100352470 + L1M4 LINE L1 2162 2489 -3657 698 128 49 137 chr6 88927146 88927350 -100352204 + L1MB1 LINE L1 5982 6167 -1 * 1860 246 60 55 chr6 88927341 88928233 -100351321 - L1ME1 LINE L1 -27 6139 5246 2046 267 70 26 chr6 88928352 88928957 -100350597 - L1ME1 LINE L1 -1771 4375 3717 2777 7 0 0 chr6 88928957 88929262 -100350292 + AluYa5 SINE Alu 1 305 -6 2046 267 70 26 chr6 88929262 88929546 -100350008 - L1ME1 LINE L1 -2429 3717 3447 1033 337 70 41 chr6 88929822 88930991 -100348563 - ERVL LTR ERVL -687 5077 3817 498 272 24 0 chr6 88930996 88931121 -100348433 + MLT1H1 LTR MaLR 1 128 -427 2139 316 90 30 chr6 88931197 88932455 -100347099 - ERVL LTR ERVL -3663 1333 1 431 181 13 168 chr6 88932455 88932567 -100346987 - LTR16A LTR ERVL 0 450 367 5742 97 54 5 chr6 88932567 88933549 -100346005 - L1PA13 LINE L1 0 6163 5158 431 181 13 168 chr6 88933549 88933591 -100345963 - LTR16A LTR ERVL -83 367 320 22 0 0 0 chr6 88933839 88933861 -100345693 + AT_rich Low_complexity Low_complexity 1 22 0 515 239 39 115 chr6 88934998 88935328 -100344226 - L1ME1 LINE L1 -5 6161 5857 * 2289 175 48 9 chr6 88935323 88935780 -100343774 - L1MC3 LINE L1 -1 7784 7310 1132 211 106 41 chr6 88935783 88936199 -100343355 + LTR47B LTR ERVL 1 443 0 800 340 72 48 chr6 88938128 88939309 -100340245 + LTR57-int LTR ERVL 2225 3433 -1910 319 156 26 52 chr6 88940745 88940822 -100338732 + MER4B-int LTR ERV1 5996 6070 -688 272 128 0 0 chr6 88940822 88940861 -100338693 + LTR47A LTR ERVL 2 40 -412 371 184 138 0 chr6 88940873 88940960 -100338594 - L1MC3 LINE L1 -1657 6128 6030 1378 218 65 42 chr6 88940973 88941358 -100338196 + LTR47B LTR ERVL 50 443 0 6963 208 82 55 chr6 88941360 88943518 -100336036 - L1MC3 LINE L1 -476 7727 5504 592 282 74 18 chr6 88943513 88943839 -100335715 + L1ME LINE L1 5285 5628 -536 * 388 371 83 28 chr6 88943935 88944331 -100335223 - L2 LINE L2 -613 2701 2284 524 16 0 0 chr6 88944492 88944555 -100334999 - L1PA4 LINE L1 -3794 2352 2290 24426 38 1 0 chr6 88944555 88948350 -100331204 + L1PA4 LINE L1 2354 6149 -6 28 0 0 0 chr6 88948788 88948816 -100330738 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr6 88948993 88949029 -100330525 + AT_rich Low_complexity Low_complexity 1 36 0 1959 141 0 0 chr6 88949245 88949552 -100330002 - AluSx SINE Alu 0 307 1 25 75 0 0 chr6 88950550 88950603 -100328951 + AT_rich Low_complexity Low_complexity 1 53 0 243 236 56 22 chr6 88950876 88950965 -100328589 + L1ME4a LINE L1 6022 6113 -8 203 227 0 0 chr6 88951606 88951650 -100327904 + L2 LINE L2 3266 3309 -4 667 307 55 4 chr6 88951808 88952046 -100327508 + MIR SINE MIR 13 262 0 625 322 62 4 chr6 88952096 88952338 -100327216 + MIR SINE MIR 1 256 -6 225 0 0 0 chr6 88952708 88952733 -100326821 + (A)n Simple_repeat Simple_repeat 1 25 0 2447 249 25 24 chr6 88953426 88954232 -100325322 - L1MC3 LINE L1 -1653 4911 4105 * 2525 176 24 34 chr6 88954229 88954762 -100324792 - L1MB8 LINE L1 -51 6127 5600 5628 34 0 0 chr6 88954771 88955441 -100324113 - L1PA4 LINE L1 0 6155 5486 3152 263 41 40 chr6 88955452 88956913 -100322641 - L1MC3 LINE L1 -2441 4123 2661 638 280 2 30 chr6 88956937 88957190 -100322364 - MLT2B1 LTR ERVL -205 310 69 6123 157 15 7 chr6 88957190 88959040 -100320514 + L1MA6 LINE L1 4437 6300 0 291 185 0 31 chr6 88959051 88959116 -100320438 - MLT2B1 LTR ERVL -351 63 1 2868 256 64 25 chr6 88959117 88960043 -100319511 - L1MC3 LINE L1 -5083 962 1 21 0 0 0 chr6 88960262 88960283 -100319271 + AT_rich Low_complexity Low_complexity 1 21 0 1977 286 47 12 chr6 88960573 88961217 -100318337 - L2 LINE L2 -865 2449 1784 180 218 0 91 chr6 88961312 88961367 -100318187 + L2 LINE L2 2930 2979 -334 2335 188 124 60 chr6 88961547 88962324 -100317230 - LTR1B LTR ERV1 0 826 1 318 270 0 0 chr6 88962568 88962642 -100316912 + MIR SINE MIR 69 142 -120 308 244 64 0 chr6 88964190 88964268 -100315286 - L2 LINE L2 -1349 1965 1883 257 0 30 0 chr6 88964956 88964989 -100314565 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 570 196 12 6 chr6 88965654 88965817 -100313737 + GA-rich Low_complexity Low_complexity 2 165 0 628 152 0 10 chr6 88966078 88966177 -100313377 + MER4A LTR ERV1 1 98 -566 2739 109 2 22 chr6 88966178 88966479 -100313075 + MER4A LTR ERV1 262 554 -110 2308 146 30 56 chr6 88966479 88966978 -100312576 - LTR19A LTR ERV1 0 486 1 2739 109 2 22 chr6 88966978 88967087 -100312467 + MER4A LTR ERV1 554 664 0 2505 118 53 14 chr6 88967787 88968218 -100311336 + LTR7 LTR ERV1 1 448 -2 221 83 28 0 chr6 88968377 88968413 -100311141 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 531 306 176 34 chr6 88968420 88968921 -100310633 - L2 LINE L2 -36 3277 2689 2596 280 205 17 chr6 88968921 88970175 -100309379 - L2 LINE L2 -821 2493 1004 1551 171 63 126 chr6 88970177 88970715 -100308839 - MER67D LTR ERV1 0 514 11 216 341 24 32 chr6 88970719 88970842 -100308712 - L2 LINE L2 -2312 1002 881 924 322 46 7 chr6 88972825 88973129 -100306425 + MLT2E LTR ERVL 44 359 -269 268 326 54 34 chr6 88973181 88973311 -100306243 + L2 LINE L2 3163 3298 -15 420 20 0 0 chr6 88973311 88973360 -100306194 + (TA)n Simple_repeat Simple_repeat 2 50 0 268 326 54 34 chr6 88973360 88973376 -100306178 + L2 LINE L2 3298 3312 -1 21 0 0 0 chr6 88974341 88974362 -100305192 + AT_rich Low_complexity Low_complexity 1 21 0 4519 70 17 2 chr6 88975228 88976316 -100303238 - HERVL-A1 LTR ERVL -4484 1170 2 2949 92 75 0 chr6 88976319 88976732 -100302822 - MLT2A1 LTR ERVL 0 444 1 334 256 0 0 chr6 88976733 88976811 -100302743 - L1P LINE L1 -2642 3504 3427 2528 56 0 0 chr6 88976962 88977265 -100302289 + AluY SINE Alu 1 303 -8 23 0 0 0 chr6 88977336 88977359 -100302195 + AT_rich Low_complexity Low_complexity 1 23 0 437 270 68 37 chr6 88977443 88977606 -100301948 + MIR SINE MIR 34 201 -61 1365 231 159 26 chr6 88977632 88978052 -100301502 + MLT1D LTR MaLR 5 480 -25 2523 61 0 0 chr6 88978727 88979038 -100300516 + AluY SINE Alu 1 311 0 741 268 143 0 chr6 88981008 88981232 -100298322 - MIR SINE MIR -6 256 1 22 35 0 0 chr6 88981533 88981562 -100297992 + AT_rich Low_complexity Low_complexity 1 29 0 303 49 0 0 chr6 88982047 88982088 -100297466 + (CA)n Simple_repeat Simple_repeat 2 42 0 225 128 0 0 chr6 88982088 88982135 -100297419 + (GA)n Simple_repeat Simple_repeat 1 47 0 1657 215 20 6 chr6 88982135 88982479 -100297075 - MLT2C1 LTR ERVL -48 349 1 339 323 132 39 chr6 88982972 88983008 -100296546 + L2 LINE L2 2841 2872 -441 1033 210 46 122 chr6 88983008 88983403 -100296151 + MLT1A1 LTR MaLR 1 365 0 339 323 132 39 chr6 88983403 88983676 -100295878 + L2 LINE L2 2872 3179 -134 714 258 13 60 chr6 88984130 88984428 -100295126 - L1ME3A LINE L1 -260 5910 5627 550 218 91 24 chr6 88987237 88987402 -100292152 - MER69A DNA AcHobo -1 176 1 13163 127 18 6 chr6 88987955 88989611 -100289943 + L1PA10 LINE L1 3205 4930 -1238 2382 126 0 8 chr6 88989611 88989969 -100289585 - THE1A LTR MaLR 0 355 1 13163 127 18 6 chr6 88989969 88991221 -100288333 + L1PA10 LINE L1 4930 6165 -3 1058 189 50 0 chr6 88992500 88992701 -100286853 + MSTA LTR MaLR 218 428 0 488 294 196 0 chr6 88992944 88993128 -100286426 - MIR SINE MIR -31 231 12 2046 179 27 12 chr6 88993695 88994013 -100285541 + L1MA5 LINE L1 5465 5792 -508 273 75 0 0 chr6 88994013 88994053 -100285501 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 2046 179 27 12 chr6 88994053 88994137 -100285417 + L1MA5 LINE L1 5792 5873 -427 * 2925 197 72 23 chr6 88994133 88994828 -100284726 - L1M4b LINE L1 -5422 1437 709 758 233 0 0 chr6 88994869 88995015 -100284539 - MER2 DNA MER2_type -198 147 2 444 37 0 0 chr6 88995034 88995088 -100284466 + (TG)n Simple_repeat Simple_repeat 2 55 0 2023 137 29 40 chr6 88995848 88996227 -100283327 + THE1C LTR MaLR 1 375 0 213 154 0 0 chr6 88996373 88996412 -100283142 + (CA)n Simple_repeat Simple_repeat 2 40 0 323 309 37 43 chr6 88996439 88996627 -100282927 - L1MEc LINE L1 -4929 1381 1195 338 258 88 22 chr6 88996640 88996822 -100282732 - L1MEc LINE L1 -5004 1115 922 1944 235 6 4 chr6 88996828 88997331 -100282223 - L1PA16 LINE L1 -923 5223 4720 4719 167 26 19 chr6 88997339 88997810 -100281744 + L1PA16 LINE L1 5254 5735 -431 2395 84 0 3 chr6 88997810 88998107 -100281447 + AluSg SINE Alu 1 296 -14 4719 167 26 19 chr6 88998107 88998522 -100281032 + L1PA16 LINE L1 5735 6146 -20 23 0 0 0 chr6 88998522 88998545 -100281009 + AT_rich Low_complexity Low_complexity 1 23 0 3544 190 69 4 chr6 88999208 88999886 -100279668 - MER72 LTR ERV1 0 722 1 321 286 185 5 chr6 89000210 89000399 -100279155 - MIR SINE MIR 0 262 40 409 327 88 75 chr6 89000751 89001005 -100278549 - L2 LINE L2 -656 2658 2409 180 0 0 0 chr6 89001005 89001025 -100278529 + (CAA)n Simple_repeat Simple_repeat 2 21 0 409 327 88 75 chr6 89001025 89001382 -100278172 - L2 LINE L2 -905 2409 2039 1337 182 104 28 chr6 89001783 89002101 -100277453 + MER2 DNA MER2_type 2 343 -1 23 97 0 0 chr6 89002498 89002570 -100276984 + AT_rich Low_complexity Low_complexity 1 72 0 342 342 41 36 chr6 89003164 89003360 -100276194 + L1ME LINE L1 5283 5479 -687 192 40 0 0 chr6 89003763 89003788 -100275766 + (CA)n Simple_repeat Simple_repeat 2 26 0 2288 114 0 0 chr6 89003809 89004117 -100275437 + AluSg SINE Alu 1 308 -2 22 35 0 0 chr6 89004155 89004184 -100275370 + AT_rich Low_complexity Low_complexity 1 29 0 6223 15 57 0 chr6 89004192 89004933 -100274621 + L1PA2 LINE L1 5373 6155 0 207 0 0 0 chr6 89004943 89004966 -100274588 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 369 353 59 40 chr6 89005411 89005683 -100273871 - L2 LINE L2 0 3313 3037 457 282 64 17 chr6 89005752 89006369 -100273185 + L1M4c LINE L1 2894 3567 -3998 * 9628 205 43 31 chr6 89006366 89006581 -100272973 + L1M4c LINE L1 10 221 -7344 1818 160 3 3 chr6 89006581 89006886 -100272668 + AluSx SINE Alu 1 305 0 9628 205 43 31 chr6 89006886 89008731 -100270823 + L1M4c LINE L1 221 2096 -5469 2238 213 65 4 chr6 89008731 89009211 -100270343 + LTR22 LTR ERVK 1 509 0 1123 300 58 28 chr6 89109425 89110190 -100169364 - L2 LINE L2 0 3313 2526 1874 151 0 42 chr6 89110666 89110978 -100168576 - AluSx SINE Alu -13 299 1 8425 211 29 6 chr6 89111424 89113328 -100166226 + L1M4c LINE L1 3761 5707 -1858 1004 157 6 6 chr6 89113328 89113487 -100166067 + AluSx SINE Alu 1 159 -153 514 215 38 96 chr6 89113487 89113780 -100165774 + L1M4c LINE L1 5673 5948 -1617 1850 157 13 3 chr6 89114284 89114584 -100164970 - AluSx SINE Alu -9 303 1 1497 223 102 18 chr6 89115834 89116234 -100163320 - MER57B LTR ERV1 0 434 1 2260 65 0 52 chr6 89117350 89117660 -100161894 + AluY SINE Alu 1 294 -17 2348 146 13 2 chr6 89117768 89118166 -100161388 - ERVL LTR ERVL -1188 4576 4175 * 6566 157 9 1 chr6 89118164 89119252 -100160302 - ERVL LTR ERVL -2049 3715 2619 1613 147 11 0 chr6 89119246 89119512 -100160042 - ERVL LTR ERVL -3057 2707 2439 * 3514 140 23 4 chr6 89119733 89120761 -100158793 - L1P4 LINE L1 -475 5699 4652 198 103 0 0 chr6 89121775 89121804 -100157750 + (CA)n Simple_repeat Simple_repeat 2 30 0 185 0 40 0 chr6 89122313 89122338 -100157216 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2178 129 0 0 chr6 89122340 89122643 -100156911 - AluSx SINE Alu -9 303 1 565 127 38 46 chr6 89123381 89123547 -100156007 + L1M3 LINE L1 5382 5536 -635 2348 105 68 3 chr6 89123866 89124217 -100155337 + THE1C LTR MaLR 1 374 -1 10002 105 36 51 chr6 89124219 89125822 -100153732 + THE1C-int LTR MaLR 2 1580 0 1764 114 23 23 chr6 89125822 89126129 -100153425 + THE1C LTR MaLR 1 307 -68 269 308 92 23 chr6 89126321 89126451 -100153103 - L3 LINE CR1 -1192 385 247 217 136 91 23 chr6 89126543 89126587 -100152967 - L2 LINE L2 -3 3310 3264 209 171 49 0 chr6 89126559 89126600 -100152954 - MIR SINE MIR -16 246 204 * 251 261 171 0 chr6 89126775 89126863 -100152691 - L2 LINE L2 -10 3262 3160 7533 200 8 9 chr6 89127847 89129372 -100150182 - MSTA-int LTR MaLR -124 1527 5 2036 167 57 43 chr6 89129376 89129407 -100150147 - MSTA LTR MaLR 0 428 399 7205 89 7 6 chr6 89129407 89131236 -100148318 + L1PA6 LINE L1 4316 6153 -1 2036 167 57 43 chr6 89131236 89131247 -100148307 - MSTA LTR MaLR -29 399 390 2154 106 7 0 chr6 89131247 89131529 -100148025 + AluSc SINE Alu 1 284 -25 2036 167 57 43 chr6 89131529 89131905 -100147649 - MSTA LTR MaLR -38 390 3 26 0 0 0 chr6 89132150 89132176 -100147378 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr6 89133229 89133267 -100146287 + AT_rich Low_complexity Low_complexity 1 38 0 4818 129 46 64 chr6 89133279 89134323 -100145231 - L1MA4 LINE L1 -22 6278 5254 305 109 16 0 chr6 89134870 89134934 -100144620 + (TA)n Simple_repeat Simple_repeat 1 65 0 211 258 0 0 chr6 89134952 89135018 -100144536 + (TG)n Simple_repeat Simple_repeat 1 66 0 338 381 8 0 chr6 89135419 89135537 -100144017 + L2 LINE L2 3150 3268 -4 180 213 85 0 chr6 89135635 89135682 -100143872 - MIR SINE MIR -11 251 201 379 280 112 14 chr6 89135687 89135830 -100143724 - MER5A DNA MER1_type 0 189 33 433 341 161 18 chr6 89137357 89137949 -100141605 - L2 LINE L2 -4 3309 2631 981 195 54 0 chr6 89138013 89138234 -100141320 - MER67C LTR ERV1 0 710 478 1636 180 50 0 chr6 89138245 89138568 -100140986 + MER47A DNA MER2_type 27 365 -1 2315 166 50 11 chr6 89138569 89139027 -100140527 - MER67C LTR ERV1 -231 479 4 571 252 140 15 chr6 89139406 89139975 -100139579 + LTR50 LTR ERVL 1 768 -27 319 282 65 32 chr6 89140691 89140815 -100138739 + L2 LINE L2 3186 3313 0 922 251 65 9 chr6 89141194 89141425 -100138129 + MIR SINE MIR 3 246 -16 341 85 7 0 chr6 89141536 89141592 -100137962 + AluSc SINE Alu 239 287 -12 583 291 109 90 chr6 89141959 89142571 -100136983 - MER45C DNA AcHobo -326 627 4 287 320 85 51 chr6 89142616 89142910 -100136644 - L2 LINE L2 -1485 1829 1526 340 289 25 8 chr6 89143656 89143777 -100135777 + CT-rich Low_complexity Low_complexity 2 124 0 39 50 0 0 chr6 89143865 89143925 -100135629 + AT_rich Low_complexity Low_complexity 1 60 0 7107 105 9 12 chr6 89144121 89145236 -100134318 + HERVH LTR ERV1 1876 2987 -4726 834 142 20 0 chr6 89145230 89145378 -100134176 + HERVH LTR ERV1 3140 3290 -4423 * 859 155 0 7 chr6 89145368 89145516 -100134038 + HERVH LTR ERV1 3492 3638 -4075 * 1118 152 0 1 chr6 89145506 89145867 -100133687 + HERVH LTR ERV1 4744 5149 -2564 1228 134 23 9 chr6 89145868 89146085 -100133469 + HERVH LTR ERV1 5600 5819 -1894 2387 69 50 13 chr6 89146085 89146461 -100133093 + HERVH LTR ERV1 7324 7713 0 705 63 0 0 chr6 89146461 89146556 -100132998 + LTR7 LTR ERV1 1 95 -355 351 250 35 9 chr6 89147058 89147174 -100132380 + (TA)n Simple_repeat Simple_repeat 2 120 0 25 0 0 0 chr6 89147804 89147829 -100131725 + AT_rich Low_complexity Low_complexity 1 25 0 220 340 66 0 chr6 89148327 89148433 -100131121 - L2 LINE L2 -254 3059 2947 2414 71 8 3 chr6 89148637 89149015 -100130539 - L1PA8A LINE L1 -27 6104 5751 360 278 0 0 chr6 89149169 89149258 -100130296 - MER46B DNA MER2_type 0 236 148 1748 138 20 52 chr6 89149258 89149607 -100129947 - THE1B LTR MaLR 0 364 27 1107 161 69 8 chr6 89149619 89149880 -100129674 - MER46B DNA MER2_type -84 152 1 24 53 0 0 chr6 89150409 89150447 -100129107 + AT_rich Low_complexity Low_complexity 1 38 0 574 223 55 10 chr6 89150674 89150876 -100128678 + L1MC/D LINE L1 5290 5500 -2308 1758 173 173 37 chr6 89150942 89151399 -100128155 - MLT2B1 LTR ERVL 0 520 2 485 66 0 121 chr6 89151479 89151518 -100128036 + MADE1 DNA Mariner 1 24 -56 2341 88 0 0 chr6 89151518 89151813 -100127741 - AluY SINE Alu -16 295 1 485 66 0 121 chr6 89151813 89151864 -100127690 + MADE1 DNA Mariner 24 80 0 255 302 0 79 chr6 89151977 89152103 -100127451 - L2 LINE L2 -46 3267 3152 453 216 27 76 chr6 89152133 89152318 -100127236 + HAL1 LINE L1 1894 2069 -438 598 231 286 22 chr6 89152412 89152681 -100126873 - MLT1G LTR MaLR -67 523 184 817 212 37 0 chr6 89152714 89152903 -100126651 + L1MC4 LINE L1 7426 7621 -421 570 266 72 42 chr6 89152943 89153274 -100126280 + HAL1 LINE L1 2152 2492 -15 384 294 35 18 chr6 89153345 89153515 -100126039 - L1ME LINE L1 -441 5680 5508 268 246 89 6 chr6 89153581 89153751 -100125803 - L1M3 LINE L1 -752 5431 5246 1079 246 83 29 chr6 89154054 89154576 -100124978 + MLT1G LTR MaLR 1 577 -13 646 105 0 0 chr6 89155693 89155779 -100123775 - AluSg/x SINE Alu -20 290 205 1859 116 96 43 chr6 89156247 89156592 -100122962 - THE1B LTR MaLR -1 363 1 566 315 47 53 chr6 89157466 89157787 -100121767 + LTR16A LTR ERVL 19 337 -113 1750 102 4 16 chr6 89157850 89158094 -100121460 - AluSg/x SINE Alu 0 312 72 180 386 78 45 chr6 89158744 89159208 -100120346 - L2 LINE L2 -1647 1667 1189 290 320 10 10 chr6 89159600 89159697 -100119857 + MIR SINE MIR 166 262 0 375 333 56 51 chr6 89160491 89160707 -100118847 - L2 LINE L2 -1 3271 3055 2856 70 8 0 chr6 89160932 89161302 -100118252 - L1PA10 LINE L1 -4 6164 5792 27 0 0 0 chr6 89163495 89163522 -100116032 + AT_rich Low_complexity Low_complexity 1 27 0 3056 184 14 7 chr6 89165353 89165393 -100114161 - MLT2B3 LTR ERVL 0 554 516 345 82 0 0 chr6 89165393 89165442 -100114112 + (TGGA)n Simple_repeat Simple_repeat 2 50 0 3056 184 14 7 chr6 89165442 89165951 -100113603 - MLT2B3 LTR ERVL -38 516 1 275 243 165 19 chr6 89167359 89167462 -100112092 + MIR SINE MIR 132 249 -13 233 355 9 28 chr6 89167716 89167823 -100111731 - L3 LINE CR1 -47 1530 1426 210 128 0 0 chr6 89170186 89170225 -100109329 + (TG)n Simple_repeat Simple_repeat 1 39 0 182 326 0 0 chr6 89170387 89170430 -100109124 - MIR SINE MIR -126 82 40 207 100 0 0 chr6 89171298 89171328 -100108226 + (CCA)n Simple_repeat Simple_repeat 3 32 0 205 321 0 37 chr6 89171913 89171994 -100107560 + L2 LINE L2 3234 3311 -2 1740 106 26 11 chr6 89172767 89173031 -100106523 + L1PA10 LINE L1 5901 6168 0 23 33 0 0 chr6 89174737 89174767 -100104787 + AT_rich Low_complexity Low_complexity 1 30 0 870 247 13 48 chr6 89175724 89175955 -100103599 + MER58A DNA MER1_type 1 223 -1 1586 102 0 0 chr6 89176011 89176226 -100103328 + AluSg/x SINE Alu 97 311 -1 2442 61 0 3 chr6 89176434 89176730 -100102824 + AluY SINE Alu 1 295 -16 1696 91 8 16 chr6 89176738 89177024 -100102530 + L1PA8 LINE L1 5909 6192 0 208 319 33 33 chr6 89179229 89179320 -100100234 - MIR SINE MIR -83 125 35 437 284 75 8 chr6 89180274 89180513 -100099041 - L1ME4a LINE L1 -192 5929 5675 438 116 61 0 chr6 89181712 89181859 -100097695 + (TA)n Simple_repeat Simple_repeat 2 157 0 254 73 24 0 chr6 89182181 89182222 -100097332 + (CA)n Simple_repeat Simple_repeat 1 42 0 242 296 49 63 chr6 89183738 89183880 -100095674 + LTR33 LTR ERVL 44 183 -338 260 186 216 72 chr6 89184370 89184537 -100095017 - LTR16A1 LTR ERVL -12 445 211 1020 288 115 14 chr6 89184973 89185762 -100093792 - L1ME4a LINE L1 -1310 4836 3968 1566 163 98 7 chr6 89185780 89186057 -100093497 + AluJb SINE Alu 1 302 -10 5704 128 35 36 chr6 89186167 89187531 -100092023 - L1PA13 LINE L1 -2 6161 4815 1883 234 59 20 chr6 89187522 89188382 -100091172 - L1PA12 LINE L1 -6297 1284 341 * 379 77 26 104 chr6 89188397 89188491 -100091063 - AluS SINE Alu -238 65 1 2157 95 0 0 chr6 89188498 89188817 -100090737 - AluSx SINE Alu 0 319 1 510 203 57 16 chr6 89192793 89192916 -100086638 + MIR SINE MIR 70 197 -65 413 330 123 46 chr6 89192823 89193675 -100085879 + L2 LINE L2 2379 3294 -19 * 434 49 16 0 chr6 89194076 89194137 -100085417 + (CA)n Simple_repeat Simple_repeat 2 63 0 22 56 0 0 chr6 89195474 89195510 -100084044 + AT_rich Low_complexity Low_complexity 1 36 0 2488 49 0 10 chr6 89195659 89195964 -100083590 + AluY SINE Alu 4 305 -6 187 234 21 21 chr6 89196112 89196159 -100083395 - MER5A DNA MER1_type -137 52 6 252 242 42 63 chr6 89197154 89197249 -100082305 - MLT1L LTR MaLR -333 282 190 267 366 49 0 chr6 89197293 89197457 -100082097 + L2 LINE L2 2872 3043 -229 216 307 118 8 chr6 89198337 89198464 -100081090 - MIR SINE MIR -2 260 120 2870 119 56 26 chr6 89199158 89199610 -100079944 - Tigger3(Golem) DNA MER2_type 0 3029 2559 2667 33 3 0 chr6 89199610 89199916 -100079638 + AluY SINE Alu 1 307 -4 2870 119 56 26 chr6 89199916 89199965 -100079589 - Tigger3(Golem) DNA MER2_type -470 2559 2513 5489 76 4 1 chr6 89199970 89200703 -100078851 - L1PA7 LINE L1 -8 6146 5412 6615 97 25 0 chr6 89200703 89201651 -100077903 - L1PA7 LINE L1 -3871 2275 1304 465 143 0 0 chr6 89201660 89201737 -100077817 - L1P LINE L1 -2128 4018 3942 5394 160 4 35 chr6 89201739 89202851 -100076703 - L1PA7 LINE L1 -4846 1300 11 15020 91 17 12 chr6 89202859 89205100 -100074454 - L1P LINE L1 -726 5428 3175 437 280 21 42 chr6 89205119 89205262 -100074292 + MIR SINE MIR 67 206 -56 205 152 0 0 chr6 89205559 89205592 -100073962 + CT-rich Low_complexity Low_complexity 2 34 0 238 280 84 63 chr6 89207757 89207900 -100071654 - L2 LINE L2 -1 3271 3126 331 291 158 19 chr6 89207943 89208025 -100071529 - MIR SINE MIR -3 259 190 548 89 13 0 chr6 89208025 89208104 -100071450 + MADE1 DNA Mariner 1 80 0 331 291 158 19 chr6 89208104 89208179 -100071375 - MIR SINE MIR -72 190 80 324 267 0 23 chr6 89210064 89210150 -100069404 + GA-rich Low_complexity Low_complexity 4 87 0 1112 271 104 44 chr6 89210164 89210987 -100068567 - HAL1 LINE L1 -732 1775 903 256 333 87 14 chr6 89211047 89211185 -100068369 - HAL1 LINE L1 -2019 488 341 185 300 0 0 chr6 89211385 89211445 -100068109 + L2 LINE L2 2863 2922 -350 702 169 15 8 chr6 89211543 89211673 -100067881 + FLAM_C SINE Alu 1 131 -12 1172 102 38 16 chr6 89212844 89213030 -100066524 + L1PA15 LINE L1 5972 6161 -4 395 380 56 12 chr6 89213411 89213661 -100065893 - MIR SINE MIR 0 262 2 183 42 0 0 chr6 89214159 89214183 -100065371 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 338 273 39 16 chr6 89214258 89214386 -100065168 + MIR SINE MIR 132 262 0 440 162 27 45 chr6 89214425 89214536 -100065018 + MER110A LTR ERV1 68 176 -292 780 263 113 34 chr6 89214598 89214891 -100064663 + MER110 LTR ERV1 176 491 0 1898 226 94 17 chr6 89214930 89215471 -100064083 + MER119 DNA MER1_type 1 583 0 1194 233 91 21 chr6 89215688 89216027 -100063527 - MLT1A1 LTR MaLR -2 363 1 337 254 14 0 chr6 89216081 89216152 -100063402 - L2 LINE L2 0 3313 3242 1983 34 17 0 chr6 89216720 89216958 -100062596 - L1PA3 LINE L1 -3 6152 5911 9065 245 52 26 chr6 89218803 89223979 -100055575 - L1PA15 LINE L1 -1 6815 1317 2012 272 34 19 chr6 89224307 89224888 -100054666 - L1PA15 LINE L1 -6196 591 2 2220 207 27 15 chr6 89225392 89225914 -100053640 + L1MB4 LINE L1 5636 6163 -17 207 209 0 0 chr6 89226991 89227034 -100052520 + (TA)n Simple_repeat Simple_repeat 2 44 0 331 371 93 7 chr6 89227120 89227271 -100052283 - L2 LINE L2 -1 3271 3108 1427 139 224 23 chr6 89227999 89228302 -100051252 + THE1B LTR MaLR 1 364 0 11412 103 6 1 chr6 89228302 89229873 -100049681 + THE1B-int LTR MaLR 1 1580 0 2131 132 76 20 chr6 89229873 89230215 -100049339 + THE1B LTR MaLR 1 361 -3 404 368 189 8 chr6 89230391 89231276 -100048278 - L2 LINE L2 -467 2847 1803 200 169 0 17 chr6 89231653 89231712 -100047842 + GA-rich Low_complexity Low_complexity 2 59 0 21 0 0 0 chr6 89231844 89231865 -100047689 + AT_rich Low_complexity Low_complexity 1 21 0 303 400 46 0 chr6 89232926 89233101 -100046453 + HAL1 LINE L1 1651 1833 -674 422 255 58 55 chr6 89233322 89233667 -100045887 - L1MC5 LINE L1 -35 7926 7581 270 226 57 0 chr6 89233952 89234005 -100045549 + L2 LINE L2 3250 3305 -8 309 241 207 17 chr6 89234155 89234271 -100045283 + L2 LINE L2 3175 3312 -1 334 271 133 26 chr6 89234966 89235117 -100044437 + MIR SINE MIR 25 191 -71 315 0 0 0 chr6 89235256 89235291 -100044263 + (CA)n Simple_repeat Simple_repeat 2 36 0 300 262 9 105 chr6 89235443 89235589 -100043965 + LTR16A1 LTR ERVL 265 387 -70 2262 94 7 3 chr6 89235589 89235886 -100043668 - AluY SINE Alu -13 298 1 300 262 9 105 chr6 89235886 89235949 -100043605 + LTR16A1 LTR ERVL 387 454 -3 909 254 96 14 chr6 89236400 89236691 -100042863 - MER46C DNA MER2_type -22 316 2 646 250 22 0 chr6 89237118 89237254 -100042300 - MIR3 SINE MIR -26 182 44 389 217 0 94 chr6 89238934 89239040 -100040514 + L2 LINE L2 3213 3308 -5 255 250 0 0 chr6 89239347 89239419 -100040135 - LTR41 LTR ERVL -6 767 696 513 274 28 17 chr6 89239945 89240124 -100039430 - LTR41 LTR ERVL -592 181 1 1425 173 32 43 chr6 89243540 89243817 -100035737 - AluJo SINE Alu 0 312 39 402 286 89 30 chr6 89244256 89244459 -100035095 - MIR SINE MIR -1 261 47 23 0 0 0 chr6 89244901 89244924 -100034630 + AT_rich Low_complexity Low_complexity 1 23 0 306 206 196 0 chr6 89246652 89246744 -100032810 + MIR SINE MIR 34 143 -119 241 370 25 8 chr6 89246913 89247032 -100032522 + MIR SINE MIR 88 208 -54 364 216 31 62 chr6 89247824 89247921 -100031633 - MER5A DNA MER1_type -85 104 11 213 324 0 0 chr6 89248285 89248353 -100031201 + MIR3 SINE MIR 135 202 -6 213 324 0 0 chr6 89248706 89248774 -100030780 + MIR3 SINE MIR 135 202 -6 197 330 77 81 chr6 89249131 89249340 -100030214 + L2 LINE L2 3088 3295 -18 375 225 45 63 chr6 89250476 89250587 -100028967 + MIR SINE MIR 6 114 -148 413 310 94 67 chr6 89250885 89251449 -100028105 + L2 LINE L2 2722 3307 -6 230 310 0 14 chr6 89251959 89252030 -100027524 + MIR SINE MIR 149 218 -44 23 33 0 0 chr6 89252756 89252786 -100026768 + AT_rich Low_complexity Low_complexity 1 30 0 252 0 0 0 chr6 89252900 89252928 -100026626 + (CA)n Simple_repeat Simple_repeat 2 29 0 931 185 113 0 chr6 89253711 89253906 -100025648 - MER20 DNA MER1_type -2 217 1 2006 151 10 13 chr6 89253987 89254298 -100025256 + AluSx SINE Alu 3 312 0 408 317 150 0 chr6 89254558 89254738 -100024816 - L3 LINE CR1 -9 1568 1362 491 299 90 52 chr6 89254741 89255009 -100024545 - L3 LINE CR1 -325 1252 975 209 276 141 45 chr6 89255157 89255313 -100024241 - L3 LINE CR1 -592 985 815 203 344 98 16 chr6 89255481 89255603 -100023951 + L3 LINE CR1 1358 1489 -88 252 135 0 0 chr6 89255957 89255994 -100023560 - Alu SINE Alu -249 53 17 2343 82 0 31 chr6 89256205 89256523 -100023031 + AluY SINE Alu 1 308 -3 21 82 0 0 chr6 89256648 89256697 -100022857 + AT_rich Low_complexity Low_complexity 1 49 0 270 386 24 31 chr6 89256782 89256909 -100022645 - L2 LINE L2 -161 3111 2986 242 344 11 0 chr6 89257884 89257974 -100021580 - MIR SINE MIR 0 262 172 * 761 322 93 70 chr6 89257958 89259302 -100020252 - L2 LINE L2 -1 3312 1932 959 285 115 40 chr6 89259602 89260251 -100019303 - L2 LINE L2 0 3313 2608 1194 212 69 63 chr6 89260429 89260792 -100018762 + MLT1A1 LTR MaLR 1 365 0 2039 174 16 0 chr6 89262186 89262560 -100016994 - L1PA16 LINE L1 -2 6164 5785 242 250 0 0 chr6 89262702 89262786 -100016768 + (CAGA)n Simple_repeat Simple_repeat 4 87 0 1695 184 3 7 chr6 89262787 89263070 -100016484 - AluJo SINE Alu -30 282 1 26 0 0 0 chr6 89263070 89263096 -100016458 + AT_rich Low_complexity Low_complexity 1 26 0 7872 13 0 0 chr6 89264341 89265476 -100014078 - L1PA2 LINE L1 -3 6152 5018 211 352 149 29 chr6 89265992 89266435 -100013119 - L2 LINE L2 -482 2832 2337 474 269 173 10 chr6 89267010 89267218 -100012336 + MIR SINE MIR 21 262 0 2990 111 51 2 chr6 89267585 89267698 -100011856 + L1PB4 LINE L1 5663 5769 -387 236 30 30 0 chr6 89267698 89267731 -100011823 + (TA)n Simple_repeat Simple_repeat 2 35 0 * 351 0 0 0 chr6 89267730 89267769 -100011785 + (TG)n Simple_repeat Simple_repeat 2 40 0 2990 111 51 2 chr6 89267731 89268122 -100011432 + L1PB4 LINE L1 5769 6152 -4 5800 90 24 12 chr6 89268545 89269448 -100010106 - L1PA12 LINE L1 0 6168 5255 2607 163 18 14 chr6 89269495 89269992 -100009562 - MER49 LTR ERV1 -424 499 1 1476 180 57 13 chr6 89269993 89270293 -100009261 - MER49-int LTR ERV1 0 6758 6446 782 238 47 21 chr6 89270295 89270488 -100009066 - MER49-int LTR ERV1 -622 6136 5939 1692 161 7 7 chr6 89270615 89270888 -100008666 + MER49 LTR ERV1 1 273 -650 2814 172 8 8 chr6 89270889 89271371 -100008183 + MER49 LTR ERV1 442 923 0 287 182 221 13 chr6 89271380 89271457 -100008097 + MER49 LTR ERV1 802 894 -29 236 216 0 136 chr6 89271482 89271570 -100007984 + MIR SINE MIR 172 247 -15 1983 139 10 0 chr6 89271736 89272045 -100007509 - AluSx SINE Alu 0 312 1 294 73 0 0 chr6 89272423 89272464 -100007090 + (TG)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr6 89272588 89272612 -100006942 + (A)n Simple_repeat Simple_repeat 1 24 0 24 67 0 0 chr6 89272878 89272923 -100006631 + AT_rich Low_complexity Low_complexity 1 45 0 5656 117 19 8 chr6 89273729 89274800 -100004754 - L1PA15 LINE L1 -54 6111 5026 282 95 0 0 chr6 89275205 89275247 -100004307 + (CA)n Simple_repeat Simple_repeat 2 43 0 235 81 108 0 chr6 89275254 89275291 -100004263 + L1P4 LINE L1 5834 5874 -291 234 0 0 0 chr6 89275306 89275332 -100004222 + (TA)n Simple_repeat Simple_repeat 1 26 0 255 226 0 32 chr6 89275339 89275432 -100004122 - L1MC4 LINE L1 -1337 6705 6616 * 268 264 0 11 chr6 89275355 89275446 -100004108 + L1MC4 LINE L1 6614 6703 -1339 300 234 14 35 chr6 89275456 89275601 -100003953 + (TA)n Simple_repeat Simple_repeat 1 142 0 2052 164 31 8 chr6 89275994 89276385 -100003169 + L1MA8 LINE L1 5722 6121 -170 262 160 0 0 chr6 89276463 89276513 -100003041 + L1MB1 LINE L1 6104 6153 -15 4661 150 41 20 chr6 89276514 89276649 -100002905 - L1PB4 LINE L1 -6 6150 6019 1751 145 184 11 chr6 89276649 89277014 -100002540 - MSTA LTR MaLR 0 428 1 8786 143 22 39 chr6 89277014 89278620 -100000934 - MSTA-int LTR MaLR 0 1580 3 1852 158 131 13 chr6 89278625 89279006 -100000548 - MSTA LTR MaLR -2 426 1 4661 150 41 20 chr6 89279006 89279797 -99999757 - L1PB4 LINE L1 -140 6016 5200 333 276 0 16 chr6 89280923 89281050 -99998504 + (TA)n Simple_repeat Simple_repeat 2 126 0 346 297 133 8 chr6 89282031 89282159 -99997395 + MIR SINE MIR 8 151 -111 265 283 109 11 chr6 89282287 89282379 -99997175 - MIR SINE MIR -133 129 29 1320 177 37 43 chr6 89283510 89283810 -99995744 + L1MA8 LINE L1 5893 6190 -101 237 211 84 70 chr6 89283884 89283955 -99995599 + L2 LINE L2 3150 3221 -51 198 0 0 0 chr6 89285535 89285557 -99993997 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 180 152 0 0 chr6 89286144 89286177 -99993377 + A-rich Low_complexity Low_complexity 3 35 0 183 338 0 99 chr6 89287543 89287614 -99991940 + L3b LINE CR1 1502 1565 -18 192 40 0 0 chr6 89287687 89287712 -99991842 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1148 269 47 27 chr6 89287998 89288403 -99991151 + L1MB1 LINE L1 11 423 -5532 4414 185 52 68 chr6 89288424 89290356 -99989198 + L1MB1 LINE L1 3879 5789 -288 8808 188 11 17 chr6 89290368 89290446 -99989108 - MSTA-int LTR MaLR -5 1646 1569 2506 53 3 0 chr6 89290446 89290745 -99988809 - AluY SINE Alu -11 300 1 8808 188 11 17 chr6 89290745 89292317 -99987237 - MSTA-int LTR MaLR -82 1569 5 2216 167 57 41 chr6 89292321 89292352 -99987202 - MSTA LTR MaLR 0 428 399 7328 85 7 6 chr6 89292352 89294181 -99985373 + L1PA6 LINE L1 4316 6153 -1 2216 167 57 41 chr6 89294181 89294192 -99985362 - MSTA LTR MaLR -29 399 390 2147 106 7 0 chr6 89294192 89294475 -99985079 + AluSc SINE Alu 1 285 -24 2216 167 57 41 chr6 89294475 89294850 -99984704 - MSTA LTR MaLR -38 390 3 291 336 230 0 chr6 89295231 89295448 -99984106 - L2 LINE L2 -20 3252 2986 429 298 125 20 chr6 89296302 89296798 -99982756 - L1ME4a LINE L1 -2 6119 5572 23 0 0 0 chr6 89296999 89297022 -99982532 + AT_rich Low_complexity Low_complexity 1 23 0 701 257 94 14 chr6 89297516 89297878 -99981676 - L1ME4a LINE L1 -2098 4048 3658 186 143 0 0 chr6 89297927 89297962 -99981592 + (TC)n Simple_repeat Simple_repeat 1 35 0 602 140 9 26 chr6 89297987 89298101 -99981453 + MLT1A1 LTR MaLR 1 112 -253 273 234 48 57 chr6 89298178 89298302 -99981252 + LTR47B LTR ERVL 278 400 -43 5508 226 46 59 chr6 89298349 89299837 -99979717 + MLT1A1-int LTR MaLR 267 1735 0 600 294 0 0 chr6 89299837 89299980 -99979574 + MLT1A1 LTR MaLR 1 143 -222 2181 220 112 25 chr6 89299985 89300421 -99979133 + MER50 LTR ERV1 10 525 -209 2535 55 0 7 chr6 89300421 89300731 -99978823 + AluY SINE Alu 1 308 -3 2181 220 112 25 chr6 89300731 89300961 -99978593 + MER50 LTR ERV1 525 734 0 810 193 47 0 chr6 89300992 89301142 -99978412 + MLT1A1 LTR MaLR 172 328 -37 351 167 0 0 chr6 89301142 89301196 -99978358 + Alu SINE Alu 238 291 -11 227 216 20 0 chr6 89301193 89301244 -99978310 + MLT1A1 LTR MaLR 314 365 0 * 1479 246 52 33 chr6 89301247 89301884 -99977670 - L1ME4a LINE L1 -2925 3221 2573 23 33 0 0 chr6 89301898 89301928 -99977626 + AT_rich Low_complexity Low_complexity 1 30 0 293 267 50 40 chr6 89301929 89302030 -99977524 + MLT1I LTR MaLR 252 353 -56 410 329 18 90 chr6 89302321 89302598 -99976956 - MLT1I LTR MaLR -109 300 44 255 61 0 0 chr6 89302611 89302644 -99976910 + (CA)n Simple_repeat Simple_repeat 2 34 0 565 361 98 11 chr6 89302801 89303250 -99976304 + L2 LINE L2 2825 3312 -1 30 45 0 0 chr6 89303287 89303331 -99976223 + AT_rich Low_complexity Low_complexity 1 44 0 2126 124 3 34 chr6 89303366 89303688 -99975866 - AluSx SINE Alu 0 312 1 1481 202 10 27 chr6 89304154 89304446 -99975108 - AluJo SINE Alu -23 289 3 198 0 0 0 chr6 89304909 89304931 -99974623 + (A)n Simple_repeat Simple_repeat 1 22 0 181 28 0 83 chr6 89305344 89305380 -99974174 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 43954 41 3 1 chr6 89305399 89311536 -99968018 - L1PA4 LINE L1 0 6155 2 1854 155 4 0 chr6 89311622 89311900 -99967654 - AluSx SINE Alu -30 282 4 366 296 154 50 chr6 89313931 89314151 -99965403 + MIR SINE MIR 10 252 -10 25 31 0 0 chr6 89314304 89314336 -99965218 + AT_rich Low_complexity Low_complexity 1 32 0 2551 48 0 0 chr6 89314638 89314931 -99964623 - AluY SINE Alu -16 295 3 228 67 0 0 chr6 89315254 89315284 -99964270 + (CA)n Simple_repeat Simple_repeat 2 31 0 2272 84 3 7 chr6 89315451 89315748 -99963806 - AluY SINE Alu -15 296 1 249 190 30 0 chr6 89317064 89317164 -99962390 + (TA)n Simple_repeat Simple_repeat 1 103 0 27 73 0 0 chr6 89317164 89317219 -99962335 + AT_rich Low_complexity Low_complexity 1 55 0 198 0 0 0 chr6 89318969 89318991 -99960563 + (T)n Simple_repeat Simple_repeat 1 22 0 214 263 26 79 chr6 89319126 89319240 -99960314 + MIR SINE MIR 59 166 -96 482 289 169 32 chr6 89319249 89319714 -99959840 - L2 LINE L2 -8 3305 2721 2086 144 28 3 chr6 89319738 89320099 -99959455 - L1MA8 LINE L1 -11 6280 5911 1389 278 120 43 chr6 89320101 89321105 -99958449 + L2 LINE L2 2167 3313 0 241 348 29 29 chr6 89321181 89321333 -99958221 + MIR SINE MIR 3 153 -63 1317 270 75 2 chr6 89321347 89321758 -99957796 - L1ME LINE L1 -376 5790 5350 403 207 198 52 chr6 89321786 89321877 -99957677 + FLAM_C SINE Alu 1 77 -225 2432 120 8 8 chr6 89321877 89322252 -99957302 + THE1C LTR MaLR 1 375 0 8979 128 45 43 chr6 89322253 89323829 -99955725 + THE1C-int LTR MaLR 2 1580 0 2685 105 0 5 chr6 89323829 89324202 -99955352 + THE1C LTR MaLR 1 371 -4 403 207 198 52 chr6 89324202 89324223 -99955331 + FLAM_C SINE Alu 76 133 -169 831 246 65 7 chr6 89324243 89324519 -99955035 - L1ME LINE L1 -844 5302 5011 347 187 0 130 chr6 89324527 89324650 -99954904 - L1ME LINE L1 -1216 4930 4824 200 325 52 0 chr6 89324663 89324740 -99954814 - L2 LINE L2 -1905 1409 1329 238 390 0 0 chr6 89324776 89324853 -99954701 - L2 LINE L2 -27 3245 3169 973 314 85 35 chr6 89324882 89325402 -99954152 - L2 LINE L2 -2012 1302 757 551 143 10 0 chr6 89325407 89325505 -99954049 - THE1C LTR MaLR -93 282 184 381 296 8 40 chr6 89325552 89325677 -99953877 - L2 LINE L2 -2616 698 578 442 204 13 8 chr6 89325688 89325842 -99953712 - MLT1D LTR MaLR 0 505 319 599 154 51 8 chr6 89325878 89325995 -99953559 - MLT1D LTR MaLR -361 144 23 549 276 206 18 chr6 89326009 89326295 -99953259 - L2 LINE L2 -2748 566 227 236 322 56 7 chr6 89326300 89326443 -99953111 - HAL1b LINE L1 -871 477 328 637 328 74 6 chr6 89326452 89326803 -99952751 - HAL1 LINE L1 -2132 375 1 21 0 0 0 chr6 89328363 89328384 -99951170 + AT_rich Low_complexity Low_complexity 1 21 0 1394 220 111 31 chr6 89329515 89329928 -99949626 + MLT1D LTR MaLR 1 446 -59 2654 29 3 0 chr6 89331743 89332051 -99947503 - AluY SINE Alu -2 309 1 2696 15 0 21 chr6 89333168 89333534 -99946020 + L1PA4 LINE L1 5835 6193 0 2166 106 0 0 chr6 89333603 89333934 -99945620 + AluSx SINE Alu 1 331 0 1063 234 31 73 chr6 89333954 89334335 -99945219 + MLT1A2 LTR MaLR 9 373 -1 495 228 29 37 chr6 89335661 89335797 -99943757 + MIR SINE MIR 79 213 -49 278 327 88 0 chr6 89336871 89336984 -99942570 + L2 LINE L2 3191 3313 0 360 308 15 8 chr6 89336985 89337115 -99942439 + GA-rich Low_complexity Low_complexity 4 134 0 494 278 68 6 chr6 89337288 89337464 -99942090 + MLT1L LTR MaLR 427 613 -2 340 329 86 0 chr6 89337597 89337749 -99941805 - MIR SINE MIR -28 234 70 255 323 58 109 chr6 89338571 89338918 -99940636 - L2 LINE L2 -1 3271 2943 191 289 92 0 chr6 89339003 89339079 -99940475 - MIR SINE MIR -62 200 118 1391 193 3 51 chr6 89339087 89339398 -99940156 - AluJo SINE Alu -16 296 1 28 0 0 0 chr6 89339828 89339856 -99939698 + AT_rich Low_complexity Low_complexity 1 28 0 36 0 0 0 chr6 89339993 89340029 -99939525 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr6 89340095 89340118 -99939436 + AT_rich Low_complexity Low_complexity 1 23 0 654 264 12 12 chr6 89342184 89342351 -99937203 + MER20 DNA MER1_type 1 167 -52 558 262 126 65 chr6 89343500 89343943 -99935611 + L1ME LINE L1 2703 3172 -2974 1660 236 25 0 chr6 89343991 89344347 -99935207 + MLT1A1 LTR MaLR 1 365 0 434 265 112 61 chr6 89344348 89344661 -99934893 + L1ME LINE L1 5332 5693 -428 1126 312 128 36 chr6 89344661 89345293 -99934261 + MER115 DNA AcHobo 4 693 0 434 265 112 61 chr6 89345293 89345431 -99934123 + L1ME LINE L1 5693 5823 -298 242 330 94 35 chr6 89346139 89346342 -99933212 + L2 LINE L2 1344 1558 -1756 278 397 91 0 chr6 89346373 89346592 -99932962 + L2 LINE L2 2736 2974 -340 346 278 122 39 chr6 89346663 89346868 -99932686 + L2 LINE L2 3092 3313 0 22 0 0 0 chr6 89347024 89347046 -99932508 + AT_rich Low_complexity Low_complexity 1 22 0 5702 159 48 21 chr6 89347583 89348933 -99930621 + L1MC1 LINE L1 4945 6317 -16 1542 264 21 8 chr6 89349887 89350274 -99929280 - MLT2B1 LTR ERVL 0 520 129 510 131 60 0 chr6 89351105 89351189 -99928365 - MLT2B1 LTR ERVL -426 89 1 2178 108 3 0 chr6 89351496 89351792 -99927762 + AluSp SINE Alu 1 297 -16 1470 201 14 21 chr6 89352116 89352395 -99927159 - AluJo SINE Alu -35 277 1 5758 124 51 2 chr6 89352724 89353783 -99925771 - L1PA13 LINE L1 0 6163 5060 1164 91 69 0 chr6 89353783 89353958 -99925596 + LTR9B LTR ERV1 1 187 -457 1644 117 12 17 chr6 89353984 89354000 -99925554 + LTR9B LTR ERV1 159 174 -470 2099 122 0 0 chr6 89354000 89354287 -99925267 + AluSg SINE Alu 21 307 -3 1644 117 12 17 chr6 89354287 89354661 -99924893 + LTR9B LTR ERV1 174 644 0 8290 171 12 15 chr6 89354661 89356219 -99923335 - L1PA13 LINE L1 -1083 5063 3511 224 274 12 24 chr6 89356376 89356460 -99923094 + CT-rich Low_complexity Low_complexity 3 85 0 2248 108 0 6 chr6 89356542 89356856 -99922698 + AluSx SINE Alu 1 312 0 1930 120 0 71 chr6 89357170 89357495 -99922059 - AluSx SINE Alu -10 302 1 1011 139 50 11 chr6 89357759 89357939 -99921615 - L1MA8 LINE L1 -52 6239 6053 2178 106 7 0 chr6 89358874 89359175 -99920379 + AluSq SINE Alu 1 303 -10 23 0 0 0 chr6 89359806 89359829 -99919725 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 89359872 89359897 -99919657 + AT_rich Low_complexity Low_complexity 1 25 0 2202 71 0 4 chr6 89360531 89360863 -99918691 + AluY SINE Alu 1 331 0 1151 246 19 22 chr6 89361149 89361417 -99918137 - MLT1C LTR MaLR -3 464 198 2493 283 79 9 chr6 89361420 89362331 -99917223 + L2 LINE L2 1157 2131 -1183 342 285 267 6 chr6 89362378 89362543 -99917011 + L2 LINE L2 2431 2638 -676 41 48 0 0 chr6 89362915 89362977 -99916577 + AT_rich Low_complexity Low_complexity 1 62 0 1194 189 40 25 chr6 89363001 89363324 -99916230 + L1M3c LINE L1 1120 1447 -4694 13607 176 23 13 chr6 89363339 89365310 -99914244 - L1MA1 LINE L1 -164 7557 5607 2205 105 0 19 chr6 89365310 89365624 -99913930 - AluSp SINE Alu -5 308 1 13607 176 23 13 chr6 89365624 89367780 -99911774 - L1MA1 LINE L1 -2114 5607 3251 4637 197 17 12 chr6 89367774 89368769 -99910785 - L1MEc LINE L1 -1712 4503 3504 * 254 173 55 73 chr6 89368768 89368878 -99910676 + L1M3c LINE L1 3198 3305 -2905 * 297 192 14 27 chr6 89368873 89368946 -99910608 + L1P LINE L1 3375 3446 -2700 1742 275 65 1 chr6 89369095 89369756 -99909798 - L1MEc LINE L1 -3106 3109 2407 1673 164 17 109 chr6 89369757 89370171 -99909383 - MLT1B LTR MaLR 0 390 15 24 53 0 0 chr6 89370171 89370209 -99909345 + AT_rich Low_complexity Low_complexity 1 38 0 456 198 11 0 chr6 89370220 89370311 -99909243 - LTR47B LTR ERVL -320 123 32 27 29 0 0 chr6 89370317 89370351 -99909203 + AT_rich Low_complexity Low_complexity 1 34 0 496 184 17 17 chr6 89370385 89370564 -99908990 + (TA)n Simple_repeat Simple_repeat 2 180 0 642 249 27 11 chr6 89370591 89370776 -99908778 - L1MC3 LINE L1 -576 7209 7022 * 765 218 122 112 chr6 89370756 89371236 -99908318 - L1MEc LINE L1 -3995 2401 1910 1143 247 63 21 chr6 89371236 89371661 -99907893 + LTR47B LTR ERVL 1 443 0 765 218 122 112 chr6 89371661 89371936 -99907618 - L1MEc LINE L1 -4486 1910 1639 1943 216 40 36 chr6 89371963 89372518 -99907036 - L1MC3 LINE L1 -21 7764 7208 266 244 0 90 chr6 89372534 89372612 -99906942 - MLT1F1 LTR MaLR -441 126 56 15207 218 21 9 chr6 89372617 89377549 -99902005 + L1PA15 LINE L1 2626 7602 -1 182 114 0 29 chr6 89377592 89377627 -99901927 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 1843 136 6 83 chr6 89377631 89377969 -99901585 - AluSx SINE Alu 0 312 1 473 293 171 0 chr6 89378640 89378780 -99900774 - MER5A DNA MER1_type -14 175 12 252 0 0 0 chr6 89378888 89378916 -99900638 + (A)n Simple_repeat Simple_repeat 1 28 0 1570 204 11 62 chr6 89380147 89380547 -99899007 - MER67C LTR ERV1 -244 270 1 22 0 0 0 chr6 89380640 89380662 -99898892 + AT_rich Low_complexity Low_complexity 1 22 0 606 290 153 11 chr6 89380735 89381087 -99898467 - L1MC/D LINE L1 -2005 5803 5402 1656 176 35 0 chr6 89381418 89381730 -99897824 + L1PA15 LINE L1 5842 6164 -1 258 302 73 73 chr6 89381825 89382017 -99897537 - MIR SINE MIR -20 242 51 300 27 0 0 chr6 89382174 89382211 -99897343 + (CA)n Simple_repeat Simple_repeat 2 38 0 916 319 62 27 chr6 89383072 89383473 -99896081 + LTR16A LTR ERVL 17 431 -19 292 278 56 0 chr6 89384237 89384327 -99895227 - MIR SINE MIR -89 173 79 21 95 0 0 chr6 89385689 89385752 -99893802 + AT_rich Low_complexity Low_complexity 1 63 0 21 57 0 0 chr6 89386289 89386324 -99893230 + AT_rich Low_complexity Low_complexity 1 35 0 206 153 0 102 chr6 89386862 89386921 -99892633 - MIR SINE MIR -79 183 131 480 18 0 0 chr6 89387925 89387982 -99891572 + (TC)n Simple_repeat Simple_repeat 2 58 0 270 0 0 0 chr6 89387983 89388013 -99891541 + (CA)n Simple_repeat Simple_repeat 2 31 0 660 211 50 142 chr6 89388569 89388830 -99890724 + MLT1D LTR MaLR 1 237 -268 1937 148 32 48 chr6 89388854 89389231 -99890323 - THE1C LTR MaLR 0 375 5 1044 137 38 75 chr6 89389233 89389445 -99890109 - THE1C LTR MaLR -169 206 3 1115 230 38 9 chr6 89389495 89389759 -99889795 + MLT1D LTR MaLR 252 505 0 305 356 79 11 chr6 89390238 89390415 -99889139 + L2 LINE L2 2149 2337 -977 2021 154 39 28 chr6 89390665 89391023 -99888531 + THE1B LTR MaLR 3 364 0 10905 122 5 3 chr6 89391023 89392600 -99886954 + THE1B-int LTR MaLR 1 1580 0 2047 150 36 28 chr6 89392600 89392961 -99886593 + THE1B LTR MaLR 1 364 0 277 360 56 51 chr6 89393278 89393492 -99886062 + L2 LINE L2 3040 3254 -18 1817 181 0 7 chr6 89393955 89394258 -99885296 + AluJb SINE Alu 1 301 -11 292 225 110 58 chr6 89395095 89395268 -99884286 - L1M4 LINE L1 -1482 4664 4483 3063 153 77 14 chr6 89395304 89395924 -99883630 - L1MA8 LINE L1 -7 6284 5626 602 130 10 10 chr6 89395920 89396020 -99883534 + L1MA8 LINE L1 5528 5627 -664 * 1806 153 71 50 chr6 89396087 89396525 -99883029 - L1MA9 LINE L1 -24 6288 5842 570 171 0 0 chr6 89396527 89396644 -99882910 + L1 LINE L1 3400 3516 -2630 1459 277 11 25 chr6 89396645 89397006 -99882548 + MLT1F LTR MaLR 106 461 -81 238 180 0 0 chr6 89397008 89397058 -99882496 + L1MA9 LINE L1 6225 6274 -38 284 297 47 23 chr6 89397300 89397428 -99882126 + MLT1F-int LTR MaLR 756 886 -485 314 289 67 110 chr6 89397545 89397936 -99881618 + MLT1F-int LTR MaLR 994 1367 -4 396 274 13 72 chr6 89397945 89398098 -99881456 + MLT1F LTR MaLR 6 149 -393 213 228 260 71 chr6 89398575 89398702 -99880852 - MIR SINE MIR -6 256 106 13793 173 29 18 chr6 89398825 89399510 -99880044 - L1MA2 LINE L1 0 7723 7047 1911 124 3 51 chr6 89399510 89399825 -99879729 - AluSq SINE Alu -13 300 1 13793 173 29 18 chr6 89399825 89401928 -99877626 - L1MA2 LINE L1 -676 7047 4868 2389 103 0 0 chr6 89401928 89402239 -99877315 - AluY SINE Alu 0 311 1 13793 173 29 18 chr6 89402239 89403735 -99875819 - L1MA2 LINE L1 -2855 4868 3390 947 160 15 0 chr6 89403728 89403934 -99875620 - L1MA2 LINE L1 -5443 2122 1863 * 4155 133 10 45 chr6 89403935 89404731 -99874823 - L1M1 LINE L1 -4172 3393 2626 581 145 43 0 chr6 89404733 89404850 -99874704 - L1M1 LINE L1 -5064 2501 2380 306 232 101 0 chr6 89404847 89404916 -99874638 + L1M1 LINE L1 1271 1346 -6219 * 321 264 81 0 chr6 89405016 89405103 -99874451 + L1M1 LINE L1 1273 1366 -6199 * 5823 210 60 5 chr6 89405093 89406216 -99873338 - L1M1 LINE L1 -6162 1403 220 593 158 0 158 chr6 89406188 89406359 -99873195 - L1MA2 LINE L1 -6904 661 518 * 7310 42 0 0 chr6 89406406 89407714 -99871840 - L1PA4 LINE L1 0 6155 4846 331 247 35 12 chr6 89408319 89408404 -99871150 - MLT1J1 LTR MaLR -292 154 68 225 325 21 32 chr6 89408415 89408603 -99870951 - L1MDb LINE L1 -5106 1303 1118 247 309 79 22 chr6 89410546 89410685 -99868869 - MLT1J2 LTR MaLR -17 433 287 349 316 65 7 chr6 89410714 89410853 -99868701 - MLT1J2 LTR MaLR -237 213 67 971 65 73 0 chr6 89411693 89411816 -99867738 + AluSp/q SINE Alu 166 297 -16 22 0 0 0 chr6 89412400 89412422 -99867132 + AT_rich Low_complexity Low_complexity 1 22 0 284 355 43 29 chr6 89412430 89412568 -99866986 + L2 LINE L2 3133 3272 0 379 264 88 32 chr6 89413374 89413499 -99866055 - L2 LINE L2 -2 3311 3180 2469 182 218 79 chr6 89413591 89414487 -99865067 - LTR28 LTR ERV1 0 1020 1 221 292 0 0 chr6 89414532 89414580 -99864974 + L2 LINE L2 2792 2839 -475 2304 242 54 7 chr6 89414580 89415170 -99864384 - MLT1E2 LTR MaLR 0 626 9 243 125 0 0 chr6 89416187 89416227 -99863327 + (CA)n Simple_repeat Simple_repeat 1 40 0 7165 43 5 0 chr6 89418616 89420208 -99859346 - L1PA5 LINE L1 0 6154 4554 11377 46 6 0 chr6 89420208 89421618 -99857936 + L1P LINE L1 3316 4733 -1413 387 0 0 0 chr6 89421969 89422012 -99857542 + (T)n Simple_repeat Simple_repeat 1 43 0 479 362 74 21 chr6 89422089 89422646 -99856908 + L2 LINE L2 2728 3313 0 249 242 32 16 chr6 89422654 89422716 -99856838 + GA-rich Low_complexity Low_complexity 4 66 0 1573 155 8 26 chr6 89423894 89424158 -99855396 - AluSq SINE Alu -53 260 2 2823 147 4 2 chr6 89424665 89425120 -99854434 + MSTA-int LTR MaLR 1196 1651 0 2169 135 114 5 chr6 89425120 89425506 -99854048 + MSTA LTR MaLR 1 428 0 1276 299 76 58 chr6 89426515 89427687 -99851867 + L1M4 LINE L1 763 1955 -4883 21 57 0 0 chr6 89427771 89427806 -99851748 + AT_rich Low_complexity Low_complexity 1 35 0 256 244 37 12 chr6 89427824 89427906 -99851648 + L1M4 LINE L1 2382 2465 -4384 27 29 0 0 chr6 89428223 89428257 -99851297 + AT_rich Low_complexity Low_complexity 1 34 0 2157 222 33 79 chr6 89428500 89429017 -99850537 + MLT2B3 LTR ERVL 3 464 -51 230 254 34 25 chr6 89429018 89429136 -99850418 + (CATATA)n Simple_repeat Simple_repeat 6 124 0 276 232 0 0 chr6 89429186 89429242 -99850312 + MLT2B3 LTR ERVL 465 520 0 327 311 129 8 chr6 89429372 89429588 -99849966 + L1M4 LINE L1 4777 4966 -1882 192 77 0 0 chr6 89429588 89429614 -99849940 + (CATA)n Simple_repeat Simple_repeat 4 29 0 327 311 129 8 chr6 89429614 89429870 -99849684 + L1M4 LINE L1 4966 5306 -1542 419 297 74 52 chr6 89429902 89430260 -99849294 + L1M4 LINE L1 5978 6358 -522 200 312 13 13 chr6 89430792 89430869 -99848685 + GA-rich Low_complexity Low_complexity 5 81 0 631 345 30 0 chr6 89430906 89431138 -99848416 + MIR SINE MIR 24 262 0 218 358 66 15 chr6 89431237 89431374 -99848180 - MIR3 SINE MIR -45 163 20 3949 179 16 23 chr6 89431382 89432131 -99847423 + MER49 LTR ERV1 180 923 0 188 309 0 88 chr6 89432135 89432203 -99847351 + L2 LINE L2 3133 3194 -78 221 268 0 0 chr6 89433971 89434030 -99845524 - MIR SINE MIR -63 145 92 227 340 76 8 chr6 89434206 89434444 -99845110 - L1ME LINE L1 -287 5834 5581 190 329 117 22 chr6 89434468 89434605 -99844949 - L2 LINE L2 -5 3308 3159 629 291 221 7 chr6 89434673 89434972 -99844582 - L2 LINE L2 -2862 452 90 862 314 76 36 chr6 89436196 89436864 -99842690 - HERV16 LTR ERVL -1204 3792 3358 1904 311 72 81 chr6 89436959 89437188 -99842366 - HERV16 LTR ERVL -1924 3072 2842 1698 179 44 25 chr6 89437188 89437552 -99842002 - THE1C LTR MaLR 0 375 5 1738 173 3 28 chr6 89437552 89437864 -99841690 - AluJb SINE Alu 0 306 2 1904 311 72 81 chr6 89437864 89438835 -99840719 - HERV16 LTR ERVL -2153 2843 2239 214 250 34 80 chr6 89438835 89438923 -99840631 - L3 LINE CR1 -1023 554 471 1904 311 72 81 chr6 89438923 89439470 -99840084 - HERV16 LTR ERVL -2757 2239 1688 253 377 29 34 chr6 89439465 89439640 -99839914 - HERV16 LTR ERVL -3417 1579 1406 * 265 186 0 0 chr6 89439689 89439732 -99839822 + MER5B DNA MER1_type 136 178 0 304 197 40 0 chr6 89439854 89439930 -99839624 + L1MB4 LINE L1 6102 6180 0 1252 273 62 6 chr6 89440295 89440636 -99838918 - L3 LINE CR1 -809 768 409 418 254 28 49 chr6 89440694 89440836 -99838718 - MIR SINE MIR -66 196 58 21 0 0 0 chr6 89440914 89440935 -99838619 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 89441026 89441049 -99838505 + AT_rich Low_complexity Low_complexity 1 23 0 1603 154 4 22 chr6 89441481 89441753 -99837801 + AluJb SINE Alu 1 267 -45 25 0 0 0 chr6 89442001 89442026 -99837528 + AT_rich Low_complexity Low_complexity 1 25 0 235 230 58 69 chr6 89442400 89442431 -99837123 + MER103 DNA DNA 78 108 -58 2223 101 0 3 chr6 89442431 89442728 -99836826 - AluSx SINE Alu -15 297 2 235 230 58 69 chr6 89442728 89442783 -99836771 + MER103 DNA DNA 108 163 -3 272 308 169 46 chr6 89444025 89444285 -99835269 + L3 LINE CR1 1269 1560 -17 288 280 30 20 chr6 89444858 89444958 -99834596 + MIR3 SINE MIR 59 159 -49 303 169 0 0 chr6 89445013 89445078 -99834476 + L1PB4 LINE L1 6092 6156 0 1992 142 0 0 chr6 89445121 89445416 -99834138 + AluSx SINE Alu 3 297 -15 180 26 26 51 chr6 89445420 89445459 -99834095 + (TA)n Simple_repeat Simple_repeat 2 39 0 348 287 19 9 chr6 89445562 89445670 -99833884 + CT-rich Low_complexity Low_complexity 3 111 0 242 291 179 8 chr6 89446130 89446247 -99833307 - MIR SINE MIR -125 137 1 328 318 40 27 chr6 89446700 89446848 -99832706 - L2 LINE L2 -20 3293 3144 548 236 32 0 chr6 89446855 89446978 -99832576 + MER94 DNA DNA 1 127 -7 510 262 112 5 chr6 89447941 89448089 -99831465 + MIR SINE MIR 33 188 -65 2051 127 3 0 chr6 89448217 89448516 -99831038 + AluSg SINE Alu 1 300 -10 385 266 21 0 chr6 89450267 89450361 -99829193 + MER5A DNA MER1_type 9 104 -85 342 0 0 0 chr6 89450653 89450691 -99828863 + (T)n Simple_repeat Simple_repeat 1 38 0 471 287 88 35 chr6 89451250 89451511 -99828043 - L1MC4a LINE L1 -1955 5853 5579 508 214 76 7 chr6 89451511 89451656 -99827898 + LTR33A LTR ERVL 358 512 -11 377 326 106 15 chr6 89451667 89451940 -99827614 + L1MC/D LINE L1 4867 5164 -982 21 36 0 0 chr6 89452004 89452032 -99827522 + AT_rich Low_complexity Low_complexity 1 28 0 2118 109 10 0 chr6 89452035 89452339 -99827215 + AluSx SINE Alu 4 310 -2 333 0 0 0 chr6 89452339 89452376 -99827178 + (TA)n Simple_repeat Simple_repeat 1 37 0 323 164 33 98 chr6 89452412 89452534 -99827020 + L1MC/D LINE L1 5317 5430 -2378 561 328 117 19 chr6 89452608 89453020 -99826534 - LTR33A LTR ERVL -65 458 7 567 335 63 26 chr6 89453042 89453469 -99826085 - L1MC4a LINE L1 -1330 4816 4374 2107 107 0 7 chr6 89453686 89453997 -99825557 + AluY SINE Alu 1 309 0 2017 162 19 8 chr6 89453999 89454358 -99825196 + Ricksha_c DNA DNA 1255 1617 -429 324 177 0 0 chr6 89454358 89454420 -99825134 - L1MA4 LINE L1 -208 6092 6031 1045 189 61 0 chr6 89454491 89454687 -99824867 - AluJb SINE Alu -3 309 102 252 184 20 0 chr6 89454688 89454737 -99824817 - AluSp SINE Alu -133 170 121 191 167 24 24 chr6 89454843 89454885 -99824669 + L2 LINE L2 2716 2757 -557 10792 156 33 40 chr6 89454916 89456934 -99822620 - Ricksha_c DNA DNA -22 2024 21 302 326 87 0 chr6 89457812 89457904 -99821650 - L2 LINE L2 -2 3311 3212 1661 290 81 16 chr6 89458116 89458671 -99820883 + MLT1E LTR MaLR 3 593 0 852 342 131 28 chr6 89458743 89459732 -99819822 - L2 LINE L2 -694 2620 1530 206 313 0 71 chr6 89459832 89459931 -99819623 - MIR SINE MIR -73 189 98 2178 116 0 0 chr6 89460183 89460484 -99819070 - AluSx SINE Alu -11 301 1 241 185 37 25 chr6 89461896 89461977 -99817577 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 930 298 64 32 chr6 89463103 89463668 -99815886 + L2 LINE L2 1487 3313 0 306 0 0 0 chr6 89464569 89464603 -99814951 + (CA)n Simple_repeat Simple_repeat 1 34 0 452 317 24 24 chr6 89464751 89464874 -99814680 + MER5B DNA MER1_type 10 132 -46 379 350 81 18 chr6 89465599 89465822 -99813732 + L2 LINE L2 2542 2778 -536 205 326 0 0 chr6 89465873 89465919 -99813635 + L2 LINE L2 2898 2943 -371 273 263 83 53 chr6 89466207 89466340 -99813214 - L2 LINE L2 -13 3300 3164 230 247 341 0 chr6 89466787 89466872 -99812682 + MIR SINE MIR 87 200 -62 791 247 54 46 chr6 89466960 89467219 -99812335 + MIR SINE MIR 2 262 0 418 311 219 5 chr6 89468504 89468989 -99810565 - L2 LINE L2 -8 3305 2701 2112 303 114 33 chr6 89468997 89470118 -99809436 - L2 LINE L2 -738 2576 1365 6641 157 33 4 chr6 89470556 89471675 -99807879 + L1M1 LINE L1 1484 2635 -4930 * 9430 183 164 6 chr6 89471670 89474717 -99804837 + L1M1 LINE L1 3441 7020 -701 1385 91 5 0 chr6 89474717 89474912 -99804642 + L1MA1 LINE L1 6099 6298 -4 268 353 30 8 chr6 89475045 89475178 -99804376 - L3b LINE CR1 -200 1383 1248 289 375 116 25 chr6 89476171 89476491 -99803063 - L2 LINE L2 -8 3264 2916 316 312 98 45 chr6 89478190 89478588 -99800966 + MLT1J LTR MaLR 81 499 -12 278 287 157 73 chr6 89478910 89479171 -99800383 + L3 LINE CR1 1104 1386 -191 297 350 97 22 chr6 89479409 89479503 -99800051 + MIR SINE MIR 20 106 -156 2011 97 10 30 chr6 89479503 89479801 -99799753 - AluSq SINE Alu -19 294 3 297 350 97 22 chr6 89479801 89479932 -99799622 + MIR SINE MIR 106 262 0 188 250 83 0 chr6 89479903 89479975 -99799579 + MER5C DNA MER1_type 155 232 -92 * 270 191 15 15 chr6 89480151 89480219 -99799335 - L1MA8 LINE L1 -4 6287 6220 463 258 80 26 chr6 89480219 89480538 -99799016 - L1ME LINE L1 -643 5526 5188 1811 151 49 33 chr6 89480556 89480921 -99798633 - L1PB4 LINE L1 -3 7572 7202 198 263 0 0 chr6 89480924 89480981 -99798573 + (TATG)n Simple_repeat Simple_repeat 2 58 0 2929 151 38 8 chr6 89481000 89481612 -99797942 - L1PB4 LINE L1 -367 7208 6576 658 263 65 17 chr6 89481611 89481898 -99797656 + L1PBb LINE L1 784 1101 -5103 * 13293 202 26 3 chr6 89481890 89484878 -99794676 - L1PB4 LINE L1 -1062 6503 3444 467 305 108 28 chr6 89485450 89485699 -99793855 - MLT1J2 LTR MaLR -145 305 37 322 411 17 17 chr6 89487715 89487895 -99791659 - MIR3 SINE MIR -21 187 8 4297 208 55 35 chr6 89488788 89489652 -99789902 + L1MA4A LINE L1 1581 2495 -4353 297 51 0 0 chr6 89489652 89489691 -99789863 + (CAAAA)n Simple_repeat Simple_repeat 4 42 0 4297 208 55 35 chr6 89489691 89490452 -99789102 + L1MA4A LINE L1 2495 3239 -3609 7866 195 38 17 chr6 89490455 89490846 -99788708 + L1MA4A LINE L1 4197 4578 -2427 2090 132 3 0 chr6 89490846 89491149 -99788405 + AluSg SINE Alu 1 304 -6 7866 195 38 17 chr6 89491149 89491870 -99787684 + L1MA4A LINE L1 4578 5282 -1723 1979 141 0 7 chr6 89491870 89492160 -99787394 + AluSx SINE Alu 3 290 -22 7866 195 38 17 chr6 89492160 89493012 -99786542 + L1MA4A LINE L1 5282 6226 -779 333 0 0 0 chr6 89493012 89493049 -99786505 + (CA)n Simple_repeat Simple_repeat 2 38 0 7866 195 38 17 chr6 89493049 89493558 -99785996 + L1MA4A LINE L1 6226 6723 -282 1024 157 5 10 chr6 89493564 89493761 -99785793 + L1MA4 LINE L1 6807 7002 0 694 203 32 16 chr6 89493994 89494181 -99785373 + L1 LINE L1 4855 5044 -1102 2039 128 3 0 chr6 89494186 89494492 -99785062 + AluSx SINE Alu 6 312 0 22 0 0 0 chr6 89494623 89494645 -99784909 + AT_rich Low_complexity Low_complexity 1 22 0 3843 271 26 57 chr6 89494730 89496349 -99783205 + L1PBa LINE L1 3 1571 -5292 1036 121 46 0 chr6 89496346 89496519 -99783035 + L1PBb LINE L1 577 757 -5447 * 5571 190 52 20 chr6 89496535 89499314 -99780240 + L1P5 LINE L1 1 2902 -3301 2906 168 42 81 chr6 89499314 89500033 -99779521 - LTR8 LTR ERV1 0 691 1 5571 190 52 20 chr6 89500033 89500503 -99779051 + L1P5 LINE L1 2902 3355 -2848 * 5814 198 22 17 chr6 89500474 89502379 -99777175 + L1P5 LINE L1 3915 5832 -376 412 330 103 31 chr6 89502380 89502731 -99776823 + L2 LINE L2 1326 1701 -1613 198 320 64 13 chr6 89503201 89503279 -99776275 + L2 LINE L2 3191 3272 0 21 0 0 0 chr6 89503503 89503524 -99776030 + AT_rich Low_complexity Low_complexity 1 21 0 43 47 0 0 chr6 89504273 89504337 -99775217 + AT_rich Low_complexity Low_complexity 1 64 0 366 253 93 41 chr6 89504389 89504583 -99774971 + MLT1K LTR MaLR 379 582 -6 1430 241 27 14 chr6 89504622 89504991 -99774563 + MLT1A2 LTR MaLR 1 374 0 316 319 27 80 chr6 89507486 89507749 -99771805 + MLT1J1 LTR MaLR 198 446 0 2425 41 0 0 chr6 89507927 89508220 -99771334 - L1PA3 LINE L1 -1 6154 5862 2337 67 0 10 chr6 89508506 89508806 -99770748 - AluY SINE Alu -14 297 1 257 348 34 0 chr6 89509863 89509952 -99769602 - L2 LINE L2 0 3313 3222 1043 240 54 23 chr6 89509969 89510227 -99769327 - MLT1A1 LTR MaLR -2 363 98 617 306 125 31 chr6 89510251 89510636 -99768918 - L2 LINE L2 -1192 2122 1702 212 0 36 0 chr6 89512407 89512435 -99767119 + (TA)n Simple_repeat Simple_repeat 2 30 0 2074 128 3 3 chr6 89512615 89512921 -99766633 - AluSg SINE Alu -4 306 1 24 53 0 0 chr6 89512956 89512994 -99766560 + AT_rich Low_complexity Low_complexity 1 38 0 372 287 37 22 chr6 89514093 89514229 -99765325 + MIR SINE MIR 120 257 -5 237 255 261 32 chr6 89514502 89514659 -99764895 + L2 LINE L2 3113 3305 -8 578 122 223 9 chr6 89514783 89514928 -99764626 - MER4C LTR ERV1 0 610 291 1224 168 136 32 chr6 89514980 89515289 -99764265 - MER4A LTR ERV1 -323 341 1 520 308 97 0 chr6 89516313 89516498 -99763056 + MIR SINE MIR 59 261 -1 607 268 47 11 chr6 89516750 89516940 -99762614 - MIR SINE MIR -5 257 61 397 213 0 13 chr6 89516960 89517035 -99762519 + MIR SINE MIR 1 74 -188 2612 88 8 0 chr6 89517050 89517402 -99762152 + THE1A LTR MaLR 1 355 0 10610 105 23 10 chr6 89517402 89517842 -99761712 + THE1A-int LTR MaLR 1 434 -1146 1982 124 14 7 chr6 89517842 89518133 -99761421 + AluSc SINE Alu 1 293 -16 10610 105 23 10 chr6 89518133 89519252 -99760302 + THE1A-int LTR MaLR 434 1580 0 2610 99 6 0 chr6 89519252 89519605 -99759949 + THE1A LTR MaLR 1 355 0 33 25 0 0 chr6 89519661 89519701 -99759853 + AT_rich Low_complexity Low_complexity 1 40 0 213 39 0 0 chr6 89520599 89520625 -99758929 + (CAA)n Simple_repeat Simple_repeat 2 27 0 249 304 7 72 chr6 89520894 89521032 -99758522 - MIR SINE MIR -12 250 122 1866 285 115 66 chr6 89521037 89521252 -99758302 - L1MCc LINE L1 -4950 1473 1270 1926 183 0 0 chr6 89521252 89521564 -99757990 + AluJb SINE Alu 1 312 0 1866 285 115 66 chr6 89521564 89522472 -99757082 - L1MCc LINE L1 -5153 1270 268 2490 41 0 0 chr6 89522472 89522764 -99756790 + AluY SINE Alu 2 293 -18 1866 285 115 66 chr6 89522764 89523027 -99756527 - L1MCc LINE L1 -6155 268 19 664 320 29 23 chr6 89523056 89523365 -99756189 - LTR16A1 LTR ERVL 0 457 147 252 114 0 0 chr6 89523446 89523481 -99756073 + MSTC LTR MaLR 1 35 -393 1541 148 39 44 chr6 89523483 89523821 -99755733 + L1MA9 LINE L1 5975 6310 -2 238 316 0 0 chr6 89524834 89524913 -99754641 - MLT1H-int LTR MaLR -1653 82 4 652 272 88 86 chr6 89524916 89525407 -99754147 - MLT1H LTR MaLR 0 549 21 215 288 0 17 chr6 89525718 89525777 -99753777 + CT-rich Low_complexity Low_complexity 1 58 0 2015 108 21 0 chr6 89527019 89527307 -99752247 + AluSq SINE Alu 1 294 -19 393 303 76 16 chr6 89527467 89527652 -99751902 + MIR SINE MIR 66 261 -1 1922 138 3 35 chr6 89528838 89529107 -99750447 + AluSx SINE Alu 1 260 -52 246 62 0 0 chr6 89529107 89529139 -99750415 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1922 138 3 35 chr6 89529139 89529180 -99750374 + AluSx SINE Alu 260 301 -11 1802 296 73 67 chr6 89529529 89530745 -99748809 + L1MCc LINE L1 17 1239 -5184 1244 179 31 92 chr6 89530793 89531206 -99748348 - MLT1B LTR MaLR -2 388 1 284 275 38 0 chr6 89531225 89531305 -99748249 - MIR SINE MIR -80 182 100 335 302 157 0 chr6 89531790 89531949 -99747605 + MIR SINE MIR 29 212 -50 253 250 0 28 chr6 89532025 89532097 -99747457 + (CAT)n Simple_repeat Simple_repeat 2 71 0 22 56 0 0 chr6 89532243 89532279 -99747275 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr6 89532478 89532498 -99747056 + (TA)n Simple_repeat Simple_repeat 1 20 0 210 139 0 0 chr6 89532541 89532577 -99746977 + (GA)n Simple_repeat Simple_repeat 2 37 0 228 135 0 0 chr6 89532664 89532701 -99746853 + (TA)n Simple_repeat Simple_repeat 2 38 0 294 115 0 0 chr6 89532778 89532830 -99746724 + (GA)n Simple_repeat Simple_repeat 2 53 0 2134 116 0 14 chr6 89532944 89533237 -99746317 + AluSx SINE Alu 1 289 -23 903 193 41 0 chr6 89533887 89534084 -99745470 - L1M2 LINE L1 -4074 2775 2571 256 169 62 0 chr6 89534175 89534240 -99745314 + L1 LINE L1 2382 2450 -3696 * 4397 168 45 26 chr6 89534238 89535218 -99744336 - L1M2 LINE L1 -4283 2566 1569 2142 253 16 0 chr6 89535204 89535651 -99743903 - L1M2 LINE L1 -6205 644 191 * 246 167 67 33 chr6 89535675 89535735 -99743819 - L1M2 LINE L1 -6786 63 2 184 361 28 0 chr6 89536858 89536930 -99742624 - L2 LINE L2 -76 3196 3123 284 363 68 46 chr6 89537705 89538248 -99741306 + L2 LINE L2 2043 2597 -717 230 316 100 74 chr6 89538470 89538711 -99740843 + L2 LINE L2 2422 2672 -642 3117 175 163 42 chr6 89538711 89539448 -99740106 - LTR1B LTR ERV1 0 826 1 230 316 100 74 chr6 89539448 89539475 -99740079 + L2 LINE L2 2672 2697 -617 933 273 34 0 chr6 89539616 89540001 -99739553 - L1M4 LINE L1 -3026 3931 3534 296 299 65 33 chr6 89540041 89540225 -99739329 - L1M4 LINE L1 -6659 200 11 305 214 128 43 chr6 89543253 89543370 -99736184 + MIR3 SINE MIR 71 197 -11 850 94 0 0 chr6 89543458 89543575 -99735979 - AluY SINE Alu 0 311 195 278 313 27 18 chr6 89543639 89543751 -99735803 - MIR3 SINE MIR -4 204 92 374 304 147 0 chr6 89544390 89544574 -99734980 + L2 LINE L2 303 513 -2801 335 335 99 14 chr6 89545118 89545330 -99734224 + L2 LINE L2 1585 1814 -1500 526 211 35 116 chr6 89545399 89545598 -99733956 + MER63A DNA MER1_type 28 210 0 2086 134 0 3 chr6 89546392 89546690 -99732864 + AluSx SINE Alu 3 299 -13 9507 131 59 13 chr6 89546693 89547017 -99732537 + L1PB4 LINE L1 11 318 -6544 3390 48 0 0 chr6 89547017 89547433 -99732121 + L1PA4 LINE L1 5737 6152 -3 9507 131 59 13 chr6 89547433 89550435 -99729119 + L1PB4 LINE L1 318 3648 -3214 * 15400 35 2 1 chr6 89550430 89552345 -99727209 - L1P LINE L1 -2743 3403 1488 3573 29 0 0 chr6 89552345 89552764 -99726790 + L1PA3 LINE L1 5736 6154 -1 4487 173 36 33 chr6 89552767 89553944 -99725610 + L1PB4 LINE L1 5711 6872 0 594 286 57 25 chr6 89554084 89554367 -99725187 - L1MEc LINE L1 -4255 2141 1850 258 286 0 0 chr6 89554490 89554567 -99724987 - L1MEc LINE L1 -4756 1640 1564 351 283 67 75 chr6 89554691 89555289 -99724265 - L1MEc LINE L1 -5011 1385 793 369 353 0 14 chr6 89557016 89557155 -99722399 + MIR SINE MIR 2 138 -124 222 306 16 0 chr6 89557497 89557559 -99721995 - L2 LINE L2 -9 3263 3201 207 0 0 0 chr6 89557622 89557645 -99721909 + (CA)n Simple_repeat Simple_repeat 2 24 0 21 57 0 0 chr6 89558725 89558760 -99720794 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr6 89558973 89558998 -99720556 + AT_rich Low_complexity Low_complexity 1 25 0 213 178 0 0 chr6 89559133 89559178 -99720376 + (CA)n Simple_repeat Simple_repeat 2 46 0 26 50 0 0 chr6 89559270 89559310 -99720244 + AT_rich Low_complexity Low_complexity 1 40 0 265 313 99 15 chr6 89559383 89559514 -99720040 + HAL1 LINE L1 3 144 -2363 763 277 87 54 chr6 89559548 89559766 -99719788 + MLT1E2 LTR MaLR 1 249 -375 932 281 15 23 chr6 89563081 89563344 -99716210 + MIR SINE MIR 2 262 0 1084 124 0 5 chr6 89563633 89563818 -99715736 - L1M1 LINE L1 -839 5461 5278 1572 185 19 0 chr6 89563818 89564122 -99715432 + L1MA6 LINE L1 5987 6300 0 231 227 57 45 chr6 89566084 89566172 -99713382 + L1ME LINE L1 5647 5735 -386 * 3846 200 63 8 chr6 89566171 89567799 -99711755 + L1MA10 LINE L1 4513 6222 -112 21 89 0 0 chr6 89567929 89567985 -99711569 + AT_rich Low_complexity Low_complexity 1 56 0 1786 218 46 30 chr6 89568010 89568238 -99711316 + L1MCa LINE L1 37 260 -6166 1901 156 49 15 chr6 89568238 89568564 -99710990 - MER1B DNA MER1_type 0 337 1 1786 218 46 30 chr6 89568564 89568794 -99710760 + L1MCa LINE L1 260 502 -5924 1152 205 55 49 chr6 89568789 89569148 -99710406 + L1MCa LINE L1 1290 1646 -4780 * 2085 127 0 31 chr6 89569148 89569287 -99710267 + AluSq SINE Alu 1 143 -170 2280 72 3 30 chr6 89569287 89569591 -99709963 + AluY SINE Alu 1 296 -15 2085 127 0 31 chr6 89569591 89569774 -99709780 + AluSq SINE Alu 143 313 0 1152 205 55 49 chr6 89569774 89570189 -99709365 + L1MCa LINE L1 1646 2217 -4209 2589 108 5 13 chr6 89570189 89570567 -99708987 + THE1C LTR MaLR 1 375 0 8715 132 40 40 chr6 89570567 89572030 -99707524 + THE1C-int LTR MaLR 1 1462 -118 217 392 14 7 chr6 89572405 89572553 -99707001 + MIR3 SINE MIR 54 202 -6 1065 257 20 85 chr6 89572667 89573068 -99706486 - MLT1-int LTR MaLR -34 1337 963 712 259 25 0 chr6 89573232 89573394 -99706160 - MLT1-int LTR MaLR -514 857 692 652 240 35 6 chr6 89573507 89573678 -99705876 - MLT1D LTR MaLR -8 497 322 391 260 130 14 chr6 89573700 89573846 -99705708 - MLT1D LTR MaLR -445 181 19 683 336 59 16 chr6 89575040 89575361 -99704193 + MLT1K LTR MaLR 25 359 -229 280 309 103 17 chr6 89575331 89575564 -99703990 + MLT1L LTR MaLR 357 609 -6 * 416 333 29 35 chr6 89575954 89576125 -99703429 - MIR3 SINE MIR -28 180 11 747 267 126 48 chr6 89576125 89576641 -99702913 + LTR38 LTR ERV1 1 556 0 9468 20 3 0 chr6 89577580 89579457 -99700097 - L1PA4 LINE L1 -3 6152 4268 793 195 20 76 chr6 89579503 89579867 -99699687 - MSTB1 LTR MaLR 0 432 1 519 317 108 36 chr6 89580629 89580963 -99698591 + LTR16A LTR ERVL 71 428 -22 311 271 108 16 chr6 89581694 89581823 -99697731 + MIR SINE MIR 122 262 0 295 295 74 25 chr6 89583225 89583347 -99696207 - L2 LINE L2 -2 3311 3184 408 125 0 0 chr6 89583452 89583516 -99696038 + (GGGA)n Simple_repeat Simple_repeat 4 67 0 1236 136 9 22 chr6 89583516 89583744 -99695810 + L1MA3 LINE L1 2181 2405 -5160 * 5849 163 19 7 chr6 89583741 89585122 -99694432 + L1MA3 LINE L1 4909 6305 0 2867 116 12 21 chr6 89585136 89585618 -99693936 + L1MA3 LINE L1 2383 2860 -4705 2084 165 74 37 chr6 89585642 89586048 -99693506 + MSTA LTR MaLR 8 428 0 8304 179 21 37 chr6 89586067 89587744 -99691810 + MSTA-int LTR MaLR 1 1651 0 1722 163 35 0 chr6 89587762 89588044 -99691510 + THE1B LTR MaLR 1 292 -72 2195 145 25 11 chr6 89588044 89588403 -99691151 + THE1B LTR MaLR 1 364 0 9399 137 29 28 chr6 89588403 89589981 -99689573 + THE1B-int LTR MaLR 1 1580 0 2373 135 0 16 chr6 89589981 89590351 -99689203 + THE1B LTR MaLR 1 364 0 1702 158 167 38 chr6 89590351 89590670 -99688884 + MSTA LTR MaLR 14 291 -137 245 51 26 0 chr6 89590670 89590709 -99688845 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2134 115 0 0 chr6 89590716 89590994 -99688560 - AluSg SINE Alu -32 278 1 1702 158 167 38 chr6 89590994 89591032 -99688522 + MSTA LTR MaLR 296 426 -2 9571 172 109 50 chr6 89591034 89592240 -99687314 + L1MA3 LINE L1 2868 4002 -3722 1098 199 23 0 chr6 89592240 89592457 -99687097 + L1PA16 LINE L1 5934 6159 -7 9571 172 109 50 chr6 89592457 89593782 -99685772 + L1MA3 LINE L1 4002 5248 -2476 856 49 0 0 chr6 89593782 89593884 -99685670 + AluSc SINE Alu 196 297 -12 9571 172 109 50 chr6 89593884 89595815 -99683739 + L1MA3 LINE L1 5248 7722 -2 549 304 42 24 chr6 89596584 89596752 -99682802 - MER5B DNA MER1_type -7 171 1 286 252 63 84 chr6 89596752 89596895 -99682659 + L2 LINE L2 247 386 -2928 654 258 68 157 chr6 89596895 89597654 -99681900 + L2 LINE L2 1315 2006 -1308 26 0 0 0 chr6 89597860 89597886 -99681668 + AT_rich Low_complexity Low_complexity 1 26 0 4875 192 6 12 chr6 89598332 89599266 -99680288 - MSTA-int LTR MaLR -718 933 5 2186 167 57 43 chr6 89599270 89599301 -99680253 - MSTA LTR MaLR 0 428 399 7309 86 7 6 chr6 89599301 89601130 -99678424 + L1PA6 LINE L1 4316 6153 -1 2186 167 57 43 chr6 89601130 89601141 -99678413 - MSTA LTR MaLR -29 399 390 2139 106 7 0 chr6 89601141 89601423 -99678131 + AluSc SINE Alu 1 284 -25 2186 167 57 43 chr6 89601423 89601799 -99677755 - MSTA LTR MaLR -38 390 3 26 0 0 0 chr6 89602044 89602070 -99677484 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr6 89603123 89603161 -99676393 + AT_rich Low_complexity Low_complexity 1 38 0 5137 128 46 64 chr6 89603173 89604217 -99675337 - L1MA4 LINE L1 -22 6278 5254 293 145 13 0 chr6 89604764 89604840 -99674714 + (TA)n Simple_repeat Simple_repeat 1 77 0 334 381 8 0 chr6 89605323 89605441 -99674113 + L2 LINE L2 3150 3268 -4 180 213 85 0 chr6 89605539 89605586 -99673968 - MIR SINE MIR -11 251 201 383 273 112 14 chr6 89605591 89605734 -99673820 - MER5A DNA MER1_type 0 189 33 428 340 161 18 chr6 89607260 89607852 -99671702 - L2 LINE L2 -4 3309 2631 1037 191 55 0 chr6 89607917 89608137 -99671417 - MER67C LTR ERV1 -1 709 478 1782 173 50 0 chr6 89608148 89608471 -99671083 + MER47A DNA MER2_type 27 365 -1 2454 164 50 9 chr6 89608472 89608929 -99670625 - MER67C LTR ERV1 -231 479 4 670 254 138 15 chr6 89609308 89609877 -99669677 + LTR50 LTR ERVL 1 768 -27 332 282 65 32 chr6 89610593 89610717 -99668837 + L2 LINE L2 3186 3313 0 919 251 65 9 chr6 89611096 89611327 -99668227 + MIR SINE MIR 3 246 -16 359 85 7 0 chr6 89611438 89611494 -99668060 + AluSc SINE Alu 239 287 -12 773 289 109 90 chr6 89611861 89612473 -99667081 - MER45C DNA AcHobo -326 627 4 291 320 85 51 chr6 89612518 89612812 -99666742 - L2 LINE L2 -1485 1829 1526 340 289 25 8 chr6 89613558 89613679 -99665875 + CT-rich Low_complexity Low_complexity 2 124 0 39 50 0 0 chr6 89613767 89613827 -99665727 + AT_rich Low_complexity Low_complexity 1 60 0 7457 107 9 12 chr6 89614023 89615138 -99664416 + HERVH LTR ERV1 1876 2987 -4726 886 142 20 0 chr6 89615132 89615280 -99664274 + HERVH LTR ERV1 3140 3290 -4423 * 887 162 0 7 chr6 89615270 89615418 -99664136 + HERVH LTR ERV1 3492 3638 -4075 * 1179 152 0 1 chr6 89615408 89615769 -99663785 + HERVH LTR ERV1 4744 5149 -2564 * 1296 131 23 14 chr6 89615766 89615987 -99663567 + HERVH LTR ERV1 5597 5819 -1894 * 2500 74 50 13 chr6 89615985 89616363 -99663191 + HERVH LTR ERV1 7322 7713 0 741 63 0 0 chr6 89616363 89616458 -99663096 + LTR7 LTR ERV1 1 95 -355 351 250 35 9 chr6 89616960 89617076 -99662478 + (TA)n Simple_repeat Simple_repeat 2 120 0 25 0 0 0 chr6 89617706 89617731 -99661823 + AT_rich Low_complexity Low_complexity 1 25 0 219 340 66 0 chr6 89618229 89618335 -99661219 - L2 LINE L2 -254 3059 2947 2510 90 8 5 chr6 89618539 89618927 -99660627 - L1PA8A LINE L1 -27 6104 5742 385 278 0 0 chr6 89619071 89619160 -99660394 - MER46B DNA MER2_type 0 236 148 1867 138 20 52 chr6 89619160 89619509 -99660045 - THE1B LTR MaLR 0 364 27 1187 161 69 8 chr6 89619521 89619782 -99659772 - MER46B DNA MER2_type -84 152 1 24 53 0 0 chr6 89620311 89620349 -99659205 + AT_rich Low_complexity Low_complexity 1 38 0 625 223 55 10 chr6 89620576 89620778 -99658776 + L1MC/D LINE L1 5290 5500 -2308 1914 173 173 37 chr6 89620844 89621301 -99658253 - MLT2B1 LTR ERVL 0 520 2 489 66 0 121 chr6 89621381 89621420 -99658134 + MADE1 DNA Mariner 1 24 -56 2334 88 0 0 chr6 89621420 89621715 -99657839 - AluY SINE Alu -16 295 1 489 66 0 121 chr6 89621715 89621766 -99657788 + MADE1 DNA Mariner 24 80 0 263 302 0 79 chr6 89621879 89622005 -99657549 - L2 LINE L2 -46 3267 3152 505 222 26 74 chr6 89622031 89622220 -99657334 + HAL1 LINE L1 1890 2069 -438 696 231 286 22 chr6 89622314 89622583 -99656971 - MLT1G LTR MaLR -67 523 184 878 212 37 0 chr6 89622616 89622805 -99656749 + L1MC4 LINE L1 7426 7621 -421 230 158 0 0 chr6 89622806 89622844 -99656710 - MLT1B LTR MaLR -3 387 350 638 265 69 42 chr6 89622845 89623177 -99656377 + HAL1 LINE L1 2152 2492 -15 451 289 71 33 chr6 89623248 89623728 -99655826 - L1ME LINE L1 -441 5680 5175 1196 254 104 58 chr6 89623979 89624479 -99655075 + MLT1H1 LTR MaLR 20 542 -13 638 105 0 0 chr6 89625596 89625682 -99653872 - AluSg/x SINE Alu -20 290 205 1851 116 96 43 chr6 89626150 89626495 -99653059 - THE1B LTR MaLR -1 363 1 664 315 47 53 chr6 89627369 89627690 -99651864 + LTR16A LTR ERVL 19 337 -113 1701 103 4 16 chr6 89627753 89627996 -99651558 - AluSg/x SINE Alu -1 309 70 183 386 78 45 chr6 89628646 89629110 -99650444 - L2 LINE L2 -1647 1667 1189 292 320 10 10 chr6 89629501 89629598 -99649956 + MIR SINE MIR 166 262 0 354 333 56 51 chr6 89630392 89630608 -99648946 - L2 LINE L2 -1 3271 3055 2846 70 8 0 chr6 89630833 89631203 -99648351 - L1PA10 LINE L1 -4 6164 5792 27 0 0 0 chr6 89633396 89633423 -99646131 + AT_rich Low_complexity Low_complexity 1 27 0 181 388 75 27 chr6 89634347 89634535 -99645019 + L2 LINE L2 2583 2779 -535 2983 186 16 7 chr6 89635253 89635293 -99644261 - MLT2B3 LTR ERVL 0 554 516 345 82 0 0 chr6 89635293 89635342 -99644212 + (TGGA)n Simple_repeat Simple_repeat 2 50 0 2983 186 16 7 chr6 89635342 89635850 -99643704 - MLT2B3 LTR ERVL -38 516 1 274 243 165 19 chr6 89637260 89637363 -99642191 + MIR SINE MIR 132 249 -13 233 355 9 28 chr6 89637617 89637724 -99641830 - L3 LINE CR1 -47 1530 1426 231 103 0 0 chr6 89640085 89640124 -99639430 + (TG)n Simple_repeat Simple_repeat 1 39 0 207 100 0 0 chr6 89641197 89641227 -99638327 + (CCA)n Simple_repeat Simple_repeat 3 32 0 205 321 0 37 chr6 89641812 89641893 -99637661 + L2 LINE L2 3234 3311 -2 1740 106 26 11 chr6 89642666 89642930 -99636624 + L1PA10 LINE L1 5901 6168 0 23 33 0 0 chr6 89644636 89644666 -99634888 + AT_rich Low_complexity Low_complexity 1 30 0 870 247 13 48 chr6 89645623 89645854 -99633700 + MER58A DNA MER1_type 1 223 -1 1562 103 0 0 chr6 89645910 89646124 -99633430 + AluSg/x SINE Alu 97 310 -2 2242 72 14 3 chr6 89646332 89646624 -99632930 + AluY SINE Alu 1 295 -16 1696 91 8 16 chr6 89646632 89646918 -99632636 + L1PA8 LINE L1 5909 6192 0 208 319 33 33 chr6 89649122 89649213 -99630341 - MIR SINE MIR -83 125 35 437 284 75 8 chr6 89650167 89650406 -99629148 - L1ME4a LINE L1 -192 5929 5675 477 107 60 0 chr6 89651605 89651754 -99627800 + (TA)n Simple_repeat Simple_repeat 2 159 0 290 67 22 0 chr6 89652076 89652121 -99627433 + (CA)n Simple_repeat Simple_repeat 1 46 0 242 296 49 63 chr6 89653637 89653779 -99625775 + LTR33 LTR ERVL 44 183 -338 260 186 216 72 chr6 89654269 89654436 -99625118 - LTR16A1 LTR ERVL -12 445 211 1014 287 115 15 chr6 89654873 89655663 -99623891 - L1ME4a LINE L1 -1310 4836 3968 1566 163 98 7 chr6 89655681 89655958 -99623596 + AluJb SINE Alu 1 302 -10 5704 128 35 36 chr6 89656068 89657432 -99622122 - L1PA13 LINE L1 -2 6161 4815 1883 233 59 20 chr6 89657423 89658283 -99621271 - L1PA12 LINE L1 -6297 1284 341 * 379 77 26 104 chr6 89658298 89658392 -99621162 - AluS SINE Alu -238 65 1 2157 95 0 0 chr6 89658399 89658718 -99620836 - AluSx SINE Alu 0 319 1 510 203 57 16 chr6 89662693 89662816 -99616738 + MIR SINE MIR 70 197 -65 413 331 123 46 chr6 89662723 89663575 -99615979 + L2 LINE L2 2379 3294 -19 * 326 61 20 0 chr6 89663976 89664025 -99615529 + (CA)n Simple_repeat Simple_repeat 2 51 0 22 56 0 0 chr6 89665361 89665397 -99614157 + AT_rich Low_complexity Low_complexity 1 36 0 2478 55 0 10 chr6 89665546 89665853 -99613701 + AluY SINE Alu 4 307 -4 187 234 21 21 chr6 89666001 89666048 -99613506 - MER5A DNA MER1_type -137 52 6 252 242 42 63 chr6 89667042 89667137 -99612417 - MLT1L LTR MaLR -333 282 190 284 377 42 0 chr6 89667178 89667345 -99612209 + L2 LINE L2 2870 3043 -229 226 294 127 8 chr6 89668225 89668351 -99611203 - MIR SINE MIR -2 260 120 2870 119 56 26 chr6 89669045 89669497 -99610057 - Tigger3b DNA MER2_type -1797 1232 762 2609 33 10 0 chr6 89669497 89669801 -99609753 + AluY SINE Alu 1 307 -4 2870 119 56 26 chr6 89669801 89669850 -99609704 - Tigger3b DNA MER2_type -2267 762 716 5489 76 4 1 chr6 89669855 89670588 -99608966 - L1PA7 LINE L1 -8 6146 5412 6641 96 25 0 chr6 89670588 89671536 -99608018 - L1PA7 LINE L1 -3871 2275 1304 465 143 0 0 chr6 89671545 89671622 -99607932 - L1P LINE L1 -2128 4018 3942 5374 159 5 35 chr6 89671624 89672735 -99606819 - L1PA7 LINE L1 -4846 1300 11 15554 93 15 11 chr6 89672743 89675074 -99604480 - L1P LINE L1 -726 5743 3403 * 25233 45 3 0 chr6 89675073 89681212 -99598342 + L1PA4 LINE L1 1 6155 0 12464 142 26 23 chr6 89681210 89684589 -99594965 - L1P3 LINE L1 -3043 3418 6 * 3614 129 39 63 chr6 89684609 89685355 -99594199 - Tigger3b DNA MER2_type -503 728 1 403 267 30 0 chr6 89685587 89685752 -99593802 + L1ME LINE L1 5648 5817 -304 2427 49 23 7 chr6 89685858 89686164 -99593390 + AluY SINE Alu 1 311 0 28 0 0 0 chr6 89686261 89686289 -99593265 + AT_rich Low_complexity Low_complexity 1 28 0 278 361 42 8 chr6 89687399 89687518 -99592036 - L3 LINE CR1 -21 1556 1434 352 294 42 0 chr6 89687737 89687856 -99591698 + LTR16A LTR ERVL 325 448 -2 263 312 24 24 chr6 89687891 89688016 -99591538 - L3 LINE CR1 -200 1377 1253 252 320 96 8 chr6 89689024 89689149 -99590405 + MIR SINE MIR 71 206 -56 238 344 23 16 chr6 89689202 89689330 -99590224 + MIR SINE MIR 97 225 -37 202 211 0 0 chr6 89689361 89689399 -99590155 + MIR SINE MIR 218 255 -7 22 0 0 0 chr6 89689656 89689678 -99589876 + AT_rich Low_complexity Low_complexity 1 22 0 272 271 40 62 chr6 89691003 89691180 -99588374 + L2 LINE L2 3137 3309 -4 1984 126 7 7 chr6 89691401 89691695 -99587859 + AluSx SINE Alu 1 294 -18 460 275 11 22 chr6 89691738 89691920 -99587634 + L1M4 LINE L1 4094 4273 -1873 392 214 24 0 chr6 89691920 89692004 -99587550 + MLT1F1 LTR MaLR 1 86 -481 295 300 11 0 chr6 89692033 89692123 -99587431 - MIR SINE MIR -18 244 154 7111 56 5 0 chr6 89692610 89693906 -99585648 + L1PA6 LINE L1 4854 6153 -1 2437 121 19 0 chr6 89693911 89694290 -99585264 - MER61-int LTR ERV1 -1873 3344 2959 1792 143 61 18 chr6 89694322 89694651 -99584903 - MER61A LTR ERV1 0 343 1 2779 165 31 2 chr6 89694683 89695169 -99584385 + MER41E LTR ERV1 1 500 -12 21 71 0 0 chr6 89695964 89696006 -99583548 + AT_rich Low_complexity Low_complexity 1 42 0 436 149 0 0 chr6 89697152 89697226 -99582328 - Alu SINE Alu -2 308 235 526 309 138 0 chr6 89697232 89697442 -99582112 + MIR SINE MIR 18 256 -6 276 374 28 28 chr6 89697574 89697788 -99581766 - MIR SINE MIR 0 262 49 228 351 54 0 chr6 89698510 89698584 -99580970 + L2 LINE L2 3121 3198 -74 341 271 47 39 chr6 89698594 89698723 -99580831 - L2 LINE L2 -5 3267 3138 891 320 72 25 chr6 89698762 89699209 -99580345 + L2 LINE L2 2786 3248 -65 193 346 57 6 chr6 89699243 89699402 -99580152 - L2 LINE L2 -1492 1822 1656 796 295 82 48 chr6 89699431 89699844 -99579710 - L2 LINE L2 -526 2788 2362 207 246 49 0 chr6 89699844 89699905 -99579649 - L2 LINE L2 -2611 703 640 1540 206 20 20 chr6 89700785 89701135 -99578419 + MLT1A1 LTR MaLR 5 354 -11 491 324 66 73 chr6 89701172 89701611 -99577943 + L2 LINE L2 2836 3271 -1 25 0 0 0 chr6 89702443 89702468 -99577086 + AT_rich Low_complexity Low_complexity 1 25 0 270 0 0 0 chr6 89702684 89702714 -99576840 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 274 296 118 30 chr6 89702791 89702960 -99576594 - MIR SINE MIR -56 206 23 318 314 132 34 chr6 89704033 89704237 -99575317 + MIR SINE MIR 21 244 -18 21 36 0 0 chr6 89704946 89704974 -99574580 + AT_rich Low_complexity Low_complexity 1 28 0 39535 58 4 5 chr6 89705763 89711917 -99567637 + L1PA4 LINE L1 7 6150 -5 22 0 0 0 chr6 89712829 89712851 -99566703 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr6 89713216 89713259 -99566295 + AT_rich Low_complexity Low_complexity 1 43 0 301 269 35 14 chr6 89713797 89713938 -99565616 - HAL1b LINE L1 -889 459 316 232 185 19 0 chr6 89715531 89715585 -99563969 + (TCTG)n Simple_repeat Simple_repeat 1 55 0 198 327 19 75 chr6 89716023 89716182 -99563372 + MIR SINE MIR 17 166 -96 318 294 84 7 chr6 89716805 89716948 -99562606 + MIR SINE MIR 75 228 -34 183 80 0 0 chr6 89716972 89716997 -99562557 + (TTA)n Simple_repeat Simple_repeat 3 27 0 265 213 57 133 chr6 89717313 89717472 -99562082 - MER112 DNA MER1_type 0 260 119 2520 70 0 0 chr6 89717472 89717770 -99561784 + AluY SINE Alu 2 299 -12 265 213 57 133 chr6 89717770 89717821 -99561733 - MER112 DNA MER1_type -141 119 66 1497 138 36 12 chr6 89718872 89719119 -99560435 + AluJb SINE Alu 40 292 -20 628 288 139 4 chr6 89720026 89720307 -99559247 + L1MCc LINE L1 919 1237 -5186 1954 171 0 22 chr6 89720377 89720739 -99558815 - MLT1A1 LTR MaLR -2 363 10 402 289 141 6 chr6 89721175 89721331 -99558223 + MER45A DNA AcHobo 1 177 -1 476 149 0 0 chr6 89721759 89721833 -99557721 + MLT1A1 LTR MaLR 122 195 -170 246 338 146 4 chr6 89721842 89722123 -99557431 - L2 LINE L2 -1264 2050 1730 1571 125 0 0 chr6 89723477 89723693 -99555861 + AluSg/x SINE Alu 76 291 -21 247 263 40 13 chr6 89723745 89723821 -99555733 - MIR SINE MIR -131 131 54 305 274 24 0 chr6 89723842 89723926 -99555628 - MIR SINE MIR -118 144 59 2234 108 0 7 chr6 89724620 89724925 -99554629 + AluSg SINE Alu 1 303 -7 245 61 45 61 chr6 89725434 89725500 -99554054 + T-rich Low_complexity Low_complexity 3 67 0 432 0 0 0 chr6 89726290 89726338 -99553216 + (TA)n Simple_repeat Simple_repeat 2 49 0 1625 198 19 25 chr6 89727127 89727441 -99552113 + AluJo SINE Alu 1 312 0 1802 200 16 97 chr6 89727569 89728135 -99551419 + MLT2B1 LTR ERVL 1 520 0 186 295 57 76 chr6 89728169 89728274 -99551280 - L3 LINE CR1 -136 1441 1339 1578 164 23 0 chr6 89728398 89728660 -99550894 + AluJb SINE Alu 29 296 -16 234 292 38 57 chr6 89729132 89729161 -99550393 + L1M4 LINE L1 4964 4992 -1154 2005 107 3 67 chr6 89729161 89729488 -99550066 + AluSg1 SINE Alu 1 306 -3 234 292 38 57 chr6 89729488 89729667 -99549887 + L1M4 LINE L1 4992 5168 -978 198 0 0 0 chr6 89729691 89729713 -99549841 + (A)n Simple_repeat Simple_repeat 1 22 0 837 204 164 8 chr6 89729887 89730254 -99549300 - MER69 DNA AcHobo 0 2526 2103 1327 299 18 5 chr6 89730306 89730697 -99548857 - MER69 DNA AcHobo -2130 396 1 584 173 130 6 chr6 89731025 89731191 -99548363 - MIR SINE MIR -48 214 21 1971 123 45 60 chr6 89731262 89731643 -99547911 + THE1C LTR MaLR 1 375 0 2027 113 178 117 chr6 89731645 89732167 -99547387 + THE1C-int LTR MaLR 3 556 -1095 5019 116 4 6 chr6 89732186 89732895 -99546659 + THE1C-int LTR MaLR 873 1580 0 769 64 0 0 chr6 89732895 89732989 -99546565 + THE1C LTR MaLR 1 94 -281 2186 114 74 8 chr6 89732989 89733341 -99546213 + THE1C LTR MaLR 1 375 0 2323 181 11 13 chr6 89733346 89733804 -99545750 - MER65C LTR ERV1 -4 457 1 405 333 30 12 chr6 89735285 89735450 -99544104 - LTR16B LTR ERVL -196 268 101 187 272 58 87 chr6 89735829 89735932 -99543622 + MER5B DNA MER1_type 9 108 -70 246 290 30 20 chr6 89735957 89736057 -99543497 - MARNA DNA Mariner -361 225 125 887 186 98 86 chr6 89736838 89737278 -99542276 - LTR56 LTR ERV1 0 445 1 505 265 29 28 chr6 89737369 89737490 -99542064 + MIR SINE MIR 18 141 -121 243 0 0 0 chr6 89737490 89737517 -99542037 + (TG)n Simple_repeat Simple_repeat 2 28 0 505 265 29 28 chr6 89737517 89737576 -99541978 + MIR SINE MIR 141 198 -64 2006 261 101 27 chr6 89738323 89739171 -99540383 - L1ME3A LINE L1 -10 6160 5254 1957 185 16 18 chr6 89739187 89739570 -99539984 + MLT1B LTR MaLR 1 382 -8 249 33 0 0 chr6 89739623 89739653 -99539901 + (TC)n Simple_repeat Simple_repeat 2 31 0 2241 281 71 51 chr6 89739653 89740435 -99539119 - L1ME3A LINE L1 -960 5186 4421 2424 65 0 0 chr6 89740435 89740727 -99538827 + AluY SINE Alu 1 292 -19 2241 281 71 51 chr6 89740727 89741727 -99537827 - L1ME3A LINE L1 -1725 4421 3368 1363 169 36 12 chr6 89741726 89741974 -99537580 + L1PA13 LINE L1 1 254 -7327 * 13540 201 31 10 chr6 89741975 89743279 -99536275 + L1PA13 LINE L1 3797 5073 -2528 351 0 0 0 chr6 89743279 89743318 -99536236 + (CA)n Simple_repeat Simple_repeat 2 40 0 13540 201 31 10 chr6 89743318 89745753 -99533801 + L1PA13 LINE L1 5073 7587 -14 4606 162 61 50 chr6 89745790 89747767 -99531787 - L1MA4A LINE L1 0 7005 5019 5884 145 3 3 chr6 89747767 89748669 -99530885 + L1PA12 LINE L1 1441 2342 -5242 4373 106 1 1 chr6 89748661 89749321 -99530233 + L1PA12 LINE L1 2616 3275 -4309 * 16716 59 6 1 chr6 89749321 89752262 -99527292 - L1PA4 LINE L1 0 6155 3203 9126 50 2 2 chr6 89752251 89754176 -99525378 + L1PA5 LINE L1 4230 6149 -5 * 315 221 16 90 chr6 89754208 89754330 -99525224 + MER66B LTR ERV1 220 332 -154 882 166 17 6 chr6 89754368 89754549 -99525005 - L1MA4A LINE L1 -1812 5036 4854 8288 214 29 7 chr6 89754558 89757201 -99522353 - L1MA4A LINE L1 -3077 3771 1070 3196 185 64 2 chr6 89757323 89757933 -99521621 + L1MB1 LINE L1 5489 6136 -53 2885 215 43 9 chr6 89757954 89758646 -99520908 + L1MB7 LINE L1 5450 6165 -19 277 163 23 0 chr6 89758772 89758815 -99520739 + Tigger5 DNA MER2_type 2278 2321 -2 362 289 50 0 chr6 89758847 89759027 -99520527 - L1MEc LINE L1 -3323 3059 2871 731 266 102 19 chr6 89759116 89759667 -99519887 - L1MEc LINE L1 -3622 2760 2202 2540 107 3 3 chr6 89759741 89760096 -99519458 + THE1A LTR MaLR 1 355 0 442 310 71 24 chr6 89760139 89760549 -99519005 - L1MEc LINE L1 -4900 1484 1056 342 67 0 0 chr6 89760697 89760742 -99518812 + (TG)n Simple_repeat Simple_repeat 1 45 0 934 248 10 10 chr6 89761370 89761572 -99517982 + MLT1A2 LTR MaLR 173 374 0 753 269 123 37 chr6 89761642 89762204 -99517350 - L1ME4a LINE L1 -11 6110 5501 808 192 0 0 chr6 89762230 89762360 -99517194 + FLAM_C SINE Alu 3 132 -11 23 33 0 0 chr6 89762535 89762565 -99516989 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 89763542 89763570 -99515984 + AT_rich Low_complexity Low_complexity 1 28 0 639 263 127 10 chr6 89763598 89763803 -99515751 + MIR SINE MIR 34 262 0 17191 167 47 9 chr6 89764090 89766989 -99512565 + L1MA3 LINE L1 16 3042 -4523 1643 182 21 40 chr6 89766989 89767368 -99512186 + THE1C LTR MaLR 4 375 0 17191 167 47 9 chr6 89767368 89767569 -99511985 + L1MA3 LINE L1 3042 3234 -4331 10490 172 19 27 chr6 89767581 89769605 -99509949 + L1P LINE L1 11 2019 -4127 6855 56 9 1 chr6 89769604 89775598 -99503956 + L1PA4 LINE L1 22 6149 -6 * 700 131 0 0 chr6 89775598 89775697 -99503857 - AluSq/x SINE Alu -181 131 33 10068 183 28 33 chr6 89775697 89778013 -99501541 + L1MA3 LINE L1 4069 6371 -1194 2009 156 135 5 chr6 89778023 89778402 -99501152 + MSTA LTR MaLR 1 428 0 9236 154 38 10 chr6 89778402 89779996 -99499558 + MSTA-int LTR MaLR 1 1580 0 2111 132 132 5 chr6 89779996 89780376 -99499178 + MSTA LTR MaLR 1 428 0 4042 128 17 7 chr6 89780380 89781289 -99498265 + L1MA3 LINE L1 6381 7467 -257 1274 113 50 76 chr6 89781289 89781527 -99498027 + MER1B DNA MER1_type 1 232 -65 425 49 0 16 chr6 89781627 89781688 -99497866 + (CA)n Simple_repeat Simple_repeat 1 60 0 304 263 45 45 chr6 89781699 89781855 -99497699 + HAL1 LINE L1 1197 1352 -1155 885 201 43 37 chr6 89781925 89782249 -99497305 + L1MCa LINE L1 2152 2477 -3949 727 241 156 3 chr6 89782276 89782591 -99496963 + L1MCa LINE L1 2484 2846 -3580 286 229 84 0 chr6 89782599 89782682 -99496872 + L1MC3 LINE L1 6180 6269 -1516 1600 229 21 0 chr6 89782688 89783077 -99496477 + L1MC3 LINE L1 6365 6761 -1024 * 4453 45 0 35 chr6 89783075 89783678 -99495876 - L1PA5 LINE L1 -31 6123 5542 2734 196 46 107 chr6 89783659 89784766 -99494788 + L1MC3 LINE L1 6138 6342 -2 * 392 320 27 60 chr6 89784801 89785170 -99494384 + HAL1 LINE L1 1405 1761 -746 21 82 0 0 chr6 89785997 89786046 -99493508 + AT_rich Low_complexity Low_complexity 1 49 0 277 240 16 8 chr6 89786506 89786627 -99492927 + (TTATA)n Simple_repeat Simple_repeat 2 123 0 31 0 0 0 chr6 89786681 89786712 -99492842 + AT_rich Low_complexity Low_complexity 1 31 0 271 261 45 23 chr6 89787210 89787298 -99492256 - MIR3 SINE MIR -3 205 116 1882 168 0 0 chr6 89789326 89789606 -99489948 + AluSx SINE Alu 1 280 -32 1624 172 15 30 chr6 89790959 89791291 -99488263 - L1PB4 LINE L1 -5 6151 5825 1904 121 60 24 chr6 89791346 89791677 -99487877 - MER61A LTR ERV1 0 343 1 11977 92 37 21 chr6 89791677 89793537 -99486017 - MER61A-int LTR ERV1 0 5217 3329 34622 95 9 16 chr6 89793547 89796440 -99483114 + L1P2 LINE L1 11 2839 -3315 2125 99 41 0 chr6 89796440 89796732 -99482822 + AluY SINE Alu 1 304 -7 34622 95 9 16 chr6 89796732 89799524 -99480030 + L1P2 LINE L1 2839 5650 -504 22 35 0 0 chr6 89849624 89849653 -99429901 + AT_rich Low_complexity Low_complexity 1 29 0 2265 99 0 0 chr6 89849770 89850063 -99429491 + AluY SINE Alu 1 293 -18 2028 141 3 0 chr6 89850080 89850370 -99429184 + AluSx SINE Alu 1 291 -21 1447 202 70 10 chr6 89851267 89851497 -99428057 + L1ME1 LINE L1 2515 2779 -3367 2340 80 3 17 chr6 89851497 89851798 -99427756 + AluSx SINE Alu 1 297 -15 1447 202 70 10 chr6 89851798 89851954 -99427600 + L1ME1 LINE L1 2779 2924 -3222 870 227 77 51 chr6 89851959 89852958 -99426596 + L1ME1 LINE L1 3561 4701 -1445 * 1130 252 63 13 chr6 89852956 89853337 -99426217 + L1ME1 LINE L1 5700 6099 -67 1015 151 6 6 chr6 89853344 89853510 -99426044 + AluJb SINE Alu 132 297 -15 1389 170 73 27 chr6 89853653 89853912 -99425642 + AluJo SINE Alu 1 271 -41 1874 243 104 36 chr6 89854040 89854817 -99424737 + L1M4 LINE L1 4451 5280 -866 805 308 115 0 chr6 89854817 89854864 -99424690 - MLT2F LTR ERVL 0 663 623 543 90 0 0 chr6 89854864 89854942 -99424612 + (TA)n Simple_repeat Simple_repeat 2 79 0 805 308 115 0 chr6 89854942 89855154 -99424400 - MLT2F LTR ERVL -40 623 374 2204 178 35 29 chr6 89855182 89855638 -99423916 - MLT1C LTR MaLR 0 467 9 780 302 81 19 chr6 89855646 89855954 -99423600 - MLT2F LTR ERVL -336 327 1 491 258 12 24 chr6 89855954 89856121 -99423433 + L1M4 LINE L1 5285 5449 -725 4946 163 43 2 chr6 89856993 89858069 -99421485 + L1PA16 LINE L1 5050 6162 -4 1733 133 86 44 chr6 89858227 89858587 -99420967 + THE1C LTR MaLR 1 375 0 744 188 15 0 chr6 89858737 89858870 -99420684 - MER20 DNA MER1_type 0 219 85 1611 188 28 3 chr6 89859206 89859493 -99420061 + AluJo SINE Alu 1 294 -18 2180 133 7 0 chr6 89859695 89860003 -99419551 - AluSq SINE Alu -3 310 1 1079 161 83 9 chr6 89860294 89860511 -99419043 + MER46A DNA MER2_type 4 236 0 1538 256 16 76 chr6 89860623 89861108 -99418446 - LTR16C LTR ERVL 0 491 36 242 219 229 62 chr6 89861200 89861296 -99418258 + MIR SINE MIR 12 123 -139 660 188 23 8 chr6 89861299 89861427 -99418127 - MLT1A1 LTR MaLR -235 130 1 2030 214 34 38 chr6 89861893 89862394 -99417160 + MLT1D LTR MaLR 7 505 0 806 163 0 0 chr6 89862682 89862811 -99416743 + AluJo SINE Alu 2 130 -172 6872 177 20 14 chr6 89862820 89864932 -99414622 + L1PA13 LINE L1 4041 6159 -4 761 230 59 0 chr6 89864933 89865085 -99414469 + AluJo SINE Alu 133 293 -19 2287 110 0 7 chr6 89865145 89865455 -99414099 - AluSx SINE Alu -3 309 2 265 242 76 15 chr6 89865916 89865982 -99413572 + MER91C DNA MER1_type 40 109 -31 1640 139 14 11 chr6 89866253 89866534 -99413020 - L1P4 LINE L1 -440 5721 5440 27 62 0 0 chr6 89868189 89868237 -99411317 + AT_rich Low_complexity Low_complexity 1 48 0 25 31 0 0 chr6 89868736 89868768 -99410786 + AT_rich Low_complexity Low_complexity 1 32 0 2363 260 102 11 chr6 89871240 89872071 -99407483 - L1PBa LINE L1 -5951 912 6 333 231 11 11 chr6 89872732 89872823 -99406731 + MIR SINE MIR 172 262 0 21 57 0 0 chr6 89874159 89874194 -99405360 + AT_rich Low_complexity Low_complexity 1 35 0 1884 160 0 23 chr6 89874749 89875056 -99404498 + MER1B DNA MER1_type 32 331 -8 12767 196 13 4 chr6 89875056 89877637 -99401917 - L1P4 LINE L1 -942 5204 2601 7426 26 1 0 chr6 89877636 89878872 -99400682 + L1PA3 LINE L1 4891 6128 -27 * 11015 104 8 11 chr6 89879361 89880959 -99398595 + L1P LINE L1 11 1603 -4543 1860 59 0 0 chr6 89880967 89881204 -99398350 + L1PA5 LINE L1 5913 6149 -5 576 259 14 0 chr6 89881286 89881425 -99398129 + L1M4 LINE L1 4862 5002 -1144 241 200 40 0 chr6 89881447 89881497 -99398057 - MER70B LTR ERVL -73 505 454 771 213 12 29 chr6 89881948 89882028 -99397526 + L1M4 LINE L1 5022 5102 -1044 1318 140 21 21 chr6 89882028 89882263 -99397291 - MER46A DNA MER2_type -1 235 1 771 213 12 29 chr6 89882263 89882426 -99397128 + L1M4 LINE L1 5102 5261 -885 * 3260 196 55 6 chr6 89882425 89883323 -99396231 + L1MD3 LINE L1 5183 5403 -743 2786 256 95 66 chr6 89883435 89884026 -99395528 - L1MEc LINE L1 -3873 2523 1951 2180 97 14 3 chr6 89884026 89884314 -99395240 - AluSx SINE Alu -21 291 1 2786 256 95 66 chr6 89884314 89885369 -99394185 - L1MEc LINE L1 -4445 1951 828 670 322 155 35 chr6 89885369 89885949 -99393605 + L3 LINE CR1 766 1415 -162 21 71 0 0 chr6 89885966 89886008 -99393546 + AT_rich Low_complexity Low_complexity 1 42 0 2291 94 0 3 chr6 89886176 89886475 -99393079 + AluSq SINE Alu 1 298 -15 1116 246 114 58 chr6 89886632 89887510 -99392044 - HAL1 LINE L1 -341 2166 1240 6794 57 16 5 chr6 89887511 89888680 -99390874 - L1PA7 LINE L1 0 6154 4976 1891 170 6 3 chr6 89888792 89889103 -99390451 - AluJb SINE Alu 0 312 1 1076 155 64 11 chr6 89889131 89889318 -99390236 + AluSq SINE Alu 1 197 -116 434 284 82 29 chr6 89890058 89890266 -99389288 + MLT1J LTR MaLR 37 255 -256 21 0 0 0 chr6 89891461 89891482 -99388072 + AT_rich Low_complexity Low_complexity 1 21 0 812 303 22 49 chr6 89891653 89892102 -99387452 + LTR16B LTR ERVL 28 464 0 943 290 126 31 chr6 89892302 89893149 -99386405 - HAL1 LINE L1 -587 1920 993 302 390 44 0 chr6 89893510 89893646 -99385908 - HAL1 LINE L1 -2363 144 3 547 355 41 5 chr6 89893820 89894040 -99385514 + MIR SINE MIR 28 255 -7 3554 196 73 0 chr6 89894099 89894837 -99384717 + MER45B DNA AcHobo 1 792 -248 1833 160 8 34 chr6 89894842 89895199 -99384355 + L1PB4 LINE L1 5809 6156 0 743 219 6 24 chr6 89895226 89895395 -99384159 + MER45B DNA AcHobo 875 1040 0 5747 122 15 14 chr6 89895823 89896086 -99383468 - L1MA2 LINE L1 0 6304 6043 1829 147 50 59 chr6 89896086 89896426 -99383128 - MER1B DNA MER1_type 0 337 1 5747 122 15 14 chr6 89896426 89897335 -99382219 - L1MA2 LINE L1 -261 6043 4962 2134 136 126 5 chr6 89897339 89897721 -99381833 - MSTA LTR MaLR 0 428 1 8682 165 38 2 chr6 89897726 89899315 -99380239 - MSTA-int LTR MaLR -6 1645 1 2006 156 135 5 chr6 89899315 89899694 -99379860 - MSTA LTR MaLR 0 428 1 5938 166 12 12 chr6 89899704 89900896 -99378658 - L1MA2 LINE L1 -1194 4952 3761 5976 154 30 3 chr6 89901000 89902365 -99377189 + L1PBa LINE L1 906 2487 -4376 2122 222 2 2 chr6 89902362 89902853 -99376701 + L1M4 LINE L1 2552 3042 -3104 * 25052 53 39 3 chr6 89902854 89906265 -99373289 + L1P LINE L1 2 3536 -2610 247 133 0 0 chr6 89906262 89906307 -99373247 + L1M4 LINE L1 4324 4368 -1778 * 3343 80 0 4 chr6 89906331 89906783 -99372771 - L1PA8 LINE L1 -10 6162 5713 198 143 0 0 chr6 89907637 89907672 -99371882 + (TA)n Simple_repeat Simple_repeat 1 35 0 2382 99 0 16 chr6 89907684 89907997 -99371557 + AluSc SINE Alu 1 308 -1 947 178 0 13 chr6 89908150 89908307 -99371247 - AluSx SINE Alu -8 302 148 1923 94 5 174 chr6 89908310 89908724 -99370830 + LTR14B LTR ERVK 1 608 0 21177 64 9 8 chr6 89908724 89911589 -99367965 + HERVK14 LTR ERVK 1 2868 -3077 3134 79 33 12 chr6 89911574 89912322 -99367232 + HERVK14 LTR ERVK 4930 5763 -182 * 325 158 0 18 chr6 89912323 89912380 -99367174 + MER41C LTR ERV1 6 61 -493 682 14 50 191 chr6 89912380 89912521 -99367033 + HERVK14 LTR ERVK 5822 5942 -3 1994 82 7 176 chr6 89912526 89912940 -99366614 + LTR14B LTR ERVK 1 608 0 892 99 66 59 chr6 89912942 89912980 -99366574 - AluSx SINE Alu -159 153 117 8325 55 1 0 chr6 89912980 89913945 -99365609 + LTR5 LTR ERVK 1 966 -3 892 99 66 59 chr6 89913945 89914058 -99365496 - AluSx SINE Alu -195 117 1 887 162 20 46 chr6 89914058 89914255 -99365299 - L1MC1 LINE L1 -8 6325 6134 1584 138 0 18 chr6 89914368 89914644 -99364910 - L1MC1 LINE L1 -740 5604 5334 2791 7 0 0 chr6 89914768 89915070 -99364484 + AluY SINE Alu 1 302 -9 2216 122 0 0 chr6 89915128 89915422 -99364132 + AluSg SINE Alu 1 294 -16 207 265 70 56 chr6 89915620 89915739 -99363815 + MIR SINE MIR 32 148 -63 269 313 113 15 chr6 89917167 89917362 -99362192 + L2 LINE L2 1892 2105 -1209 508 347 45 28 chr6 89917555 89917979 -99361575 + ERVL LTR ERVL 3414 3844 -1920 1081 204 137 32 chr6 89918895 89919238 -99360316 + MLT1B LTR MaLR 12 390 0 2366 58 3 3 chr6 89919609 89919903 -99359651 + AluY SINE Alu 1 294 -17 221 89 36 36 chr6 89919903 89919959 -99359595 + (TA)n Simple_repeat Simple_repeat 1 56 0 237 92 77 0 chr6 89920880 89920945 -99358609 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 214 294 44 0 chr6 89920962 89921030 -99358524 - MIR SINE MIR -108 154 84 203 224 52 0 chr6 89922573 89922631 -99356923 - MIR SINE MIR -71 191 131 271 341 78 16 chr6 89922732 89922861 -99356693 - MIR3 SINE MIR -14 194 58 1975 128 14 0 chr6 89923187 89923468 -99356086 + AluSx SINE Alu 1 285 -27 2385 103 0 0 chr6 89923776 89924087 -99355467 + AluSq SINE Alu 1 311 -2 2435 188 33 30 chr6 89924226 89924863 -99354691 + L1MC3 LINE L1 6329 6967 -818 286 146 0 0 chr6 89924870 89924918 -99354636 + MLT1F1 LTR MaLR 78 125 -442 2605 180 53 9 chr6 89924918 89925485 -99354069 + L1MD3 LINE L1 7404 7995 0 1530 208 11 25 chr6 89925491 89925775 -99353779 + AluJo SINE Alu 1 280 -32 1131 156 38 14 chr6 89926219 89926430 -99353124 + Tigger7 DNA MER2_type 48 263 -2224 539 202 20 0 chr6 89926432 89926531 -99353023 + Tigger7 DNA MER2_type 2387 2487 0 242 161 32 32 chr6 89926560 89926622 -99352932 + L1ME4a LINE L1 6054 6115 -6 439 286 101 6 chr6 89927085 89927253 -99352301 - MIR SINE MIR -7 255 72 29 47 0 0 chr6 89927259 89927302 -99352252 + AT_rich Low_complexity Low_complexity 1 43 0 4598 161 20 18 chr6 89929684 89929900 -99349654 + L1MA10 LINE L1 5277 5491 -843 2216 92 0 7 chr6 89929900 89930183 -99349371 + AluSg SINE Alu 1 281 -29 183 42 0 0 chr6 89930192 89930216 -99349338 + (CAA)n Simple_repeat Simple_repeat 3 26 0 4598 161 20 18 chr6 89930216 89930918 -99348636 + L1MA10 LINE L1 5498 6207 -127 306 0 0 0 chr6 89931758 89931792 -99347762 + (TA)n Simple_repeat Simple_repeat 2 35 0 1418 242 65 29 chr6 89932213 89932659 -99346895 - LTR40c LTR ERVL 0 465 4 1192 139 0 0 chr6 89932923 89933089 -99346465 - AluSg/x SINE Alu -10 302 137 1166 135 108 14 chr6 89933121 89933409 -99346145 - MER3 DNA MER1_type 0 2548 2234 613 173 0 0 chr6 89933412 89933522 -99346032 - MER3 DNA MER1_type -47 162 53 408 222 34 51 chr6 89933895 89934012 -99345542 + L2 LINE L2 3188 3302 -11 408 311 60 22 chr6 89934017 89934200 -99345354 + MIR SINE MIR 72 261 -1 1423 183 41 8 chr6 89935511 89935779 -99343775 - AluJo SINE Alu -35 277 1 1959 136 4 0 chr6 89935837 89936116 -99343438 + AluSx SINE Alu 1 280 -32 486 0 0 0 chr6 89936116 89936170 -99343384 + (CATA)n Simple_repeat Simple_repeat 3 56 0 2013 136 7 26 chr6 89936548 89936850 -99342704 + AluSx SINE Alu 1 296 -16 211 283 22 0 chr6 89937280 89937326 -99342228 + L2 LINE L2 3141 3187 -85 189 298 32 96 chr6 89937494 89937588 -99341966 - L3 LINE CR1 -1399 178 91 2284 87 0 7 chr6 89939044 89939333 -99340221 - AluSc SINE Alu -22 287 1 2303 107 0 0 chr6 89941141 89941450 -99338104 - AluSg SINE Alu -1 309 1 313 21 21 21 chr6 89941451 89941498 -99338056 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2124 106 3 7 chr6 89941498 89941782 -99337772 - AluSg SINE Alu -27 283 1 1718 167 35 0 chr6 89941786 89942073 -99337481 - AluJo SINE Alu -15 297 1 312 276 38 48 chr6 89942313 89942418 -99337136 - L3 LINE CR1 -13 1564 1461 459 191 12 0 chr6 89942563 89942647 -99336907 + Tigger5 DNA MER2_type 1 85 -2238 332 243 0 0 chr6 89942645 89942719 -99336835 - Tigger5 DNA MER2_type -8 2315 2242 * 345 241 0 13 chr6 89942709 89942788 -99336766 + Tigger5 DNA MER2_type 2242 2319 -4 484 215 51 25 chr6 89943116 89943274 -99336280 + L1MC5 LINE L1 7483 7644 -317 231 294 118 7 chr6 89945137 89945273 -99334281 - MIR SINE MIR -8 254 104 252 301 36 12 chr6 89945309 89945392 -99334162 + L2 LINE L2 3171 3255 -17 4748 249 31 26 chr6 89945983 89947609 -99331945 - L1P3 LINE L1 -3537 3260 1629 26 0 0 27 chr6 89947609 89947622 -99331932 + AT_rich Low_complexity Low_complexity 1 13 -23 5629 96 38 0 chr6 89947622 89948659 -99330895 - L1PA7 LINE L1 -1 6153 5097 26 0 0 27 chr6 89948659 89948682 -99330872 + AT_rich Low_complexity Low_complexity 13 36 0 3894 49 0 2 chr6 89948682 89949154 -99330400 - L1PA5 LINE L1 -8 6146 5676 27974 112 11 77 chr6 89949156 89954600 -99324954 - L1PA7 LINE L1 -1052 5094 12 7374 207 63 18 chr6 89954603 89955370 -99324184 - L1P3 LINE L1 -5156 1631 900 252 0 0 0 chr6 89955370 89955398 -99324156 + (CA)n Simple_repeat Simple_repeat 1 28 0 7374 207 63 18 chr6 89955398 89956191 -99323363 - L1P3 LINE L1 -5887 900 1 268 304 20 10 chr6 89956345 89956447 -99323107 - L1MC/D LINE L1 -2270 5538 5436 664 196 10 72 chr6 89956803 89956997 -99322557 - LTR41 LTR ERVL -591 182 1 552 255 76 127 chr6 89957108 89957540 -99322014 + MLT1H LTR MaLR 1 410 -139 798 256 6 0 chr6 89958452 89958624 -99320930 + MER45A DNA AcHobo 1 173 -5 23 0 0 0 chr6 89959629 89959652 -99319902 + AT_rich Low_complexity Low_complexity 1 23 0 2142 115 3 0 chr6 89959652 89959938 -99319616 + AluSp SINE Alu 1 287 -26 24 0 0 0 chr6 89960565 89960589 -99318965 + AT_rich Low_complexity Low_complexity 1 24 0 238 326 63 14 chr6 89960820 89961041 -99318513 + HAL1b LINE L1 91 322 -1026 7454 167 22 26 chr6 89961078 89962709 -99316845 + L1P4 LINE L1 3730 5349 -816 2051 130 10 20 chr6 89962709 89963010 -99316544 + AluSx SINE Alu 1 298 -14 7454 167 22 26 chr6 89963010 89963446 -99316108 + L1P4 LINE L1 5349 5785 -380 14819 107 9 5 chr6 89963450 89965687 -99313867 + L1PA5 LINE L1 2 2248 -3898 7999 53 6 3 chr6 89965769 89966866 -99312688 + L1PA5 LINE L1 4141 5240 -906 5920 47 1 0 chr6 89966966 89967686 -99311868 + L1PA5 LINE L1 5431 6151 -3 1573 271 119 12 chr6 89967706 89968503 -99311051 + HAL1 LINE L1 1069 1950 -557 3712 255 45 18 chr6 89968829 89969146 -99310408 + L1M1 LINE L1 1982 2289 -5276 2171 120 30 41 chr6 89969146 89969514 -99310040 - THE1B LTR MaLR 0 364 1 3712 255 45 18 chr6 89969514 89970670 -99308884 + L1M1 LINE L1 2289 3495 -4070 244 136 0 0 chr6 89970673 89970717 -99308837 + L1M1 LINE L1 3583 3626 -3939 362 284 67 19 chr6 89970718 89970926 -99308628 + HAL1 LINE L1 1994 2211 -296 2072 128 0 0 chr6 89970977 89971258 -99308296 + AluSx SINE Alu 1 281 -31 1846 40 0 0 chr6 89971261 89971487 -99308067 - L1PA4 LINE L1 0 6155 5930 231 36 0 0 chr6 89971489 89971517 -99308037 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 325 312 18 28 chr6 89971548 89971657 -99307897 + HAL1 LINE L1 2337 2444 -63 1630 281 39 28 chr6 89972945 89973618 -99305936 + Charlie7 DNA MER1_type 43 722 -1890 21 0 0 0 chr6 89973709 89973730 -99305824 + AT_rich Low_complexity Low_complexity 1 21 0 418 260 276 5 chr6 89973733 89973925 -99305629 + MIR SINE MIR 8 251 -11 27 49 0 0 chr6 89973926 89973967 -99305587 + AT_rich Low_complexity Low_complexity 1 41 0 282 363 97 16 chr6 89974764 89975012 -99304542 - L2 LINE L2 -447 2867 2600 812 307 140 5 chr6 89975117 89975495 -99304059 - L2 LINE L2 0 3313 2885 243 88 0 0 chr6 89975700 89975734 -99303820 + (TG)n Simple_repeat Simple_repeat 1 34 0 241 227 133 0 chr6 89976189 89976264 -99303290 - MIR SINE MIR -16 246 162 209 241 19 0 chr6 89976507 89976561 -99302993 + GA-rich Low_complexity Low_complexity 1 55 0 2148 128 3 0 chr6 89977039 89977335 -99302219 - AluSx SINE Alu -15 297 1 389 238 269 19 chr6 89978818 89978978 -99300576 - MIR SINE MIR 0 262 63 2411 98 3 0 chr6 89979212 89979518 -99300036 + AluSx SINE Alu 1 307 -5 562 55 0 0 chr6 89979518 89979591 -99299963 - L1M1 LINE L1 -577 5727 5655 374 356 0 0 chr6 89982715 89982847 -99296707 - MLT1L LTR MaLR -137 478 347 242 263 167 21 chr6 89982917 89983061 -99296493 - MLT1J2 LTR MaLR -321 164 3 290 257 114 0 chr6 89983136 89983241 -99296313 + L1MEd LINE L1 46 162 -5957 330 342 176 40 chr6 89983340 89983896 -99295658 + L1MEd LINE L1 300 931 -5188 7003 60 8 3 chr6 89984887 89986252 -99293302 + L1PA8 LINE L1 4801 6171 -1 21 36 0 0 chr6 89986497 89986525 -99293029 + AT_rich Low_complexity Low_complexity 1 28 0 359 216 216 35 chr6 89987339 89987455 -99292099 + MER5B DNA MER1_type 17 153 -25 25 31 0 0 chr6 89987887 89987919 -99291635 + AT_rich Low_complexity Low_complexity 1 32 0 269 231 29 19 chr6 89988076 89988180 -99291374 + (TTA)n Simple_repeat Simple_repeat 3 107 0 473 314 121 14 chr6 89988280 89988503 -99291051 + MIR SINE MIR 5 251 -11 200 191 95 0 chr6 89988747 89988789 -99290765 + L2 LINE L2 3267 3312 -1 560 292 183 9 chr6 89989849 89990068 -99289486 + MIR SINE MIR 4 260 -2 785 223 30 6 chr6 89990542 89990708 -99288846 + MER5A DNA MER1_type 19 188 -1 411 309 12 43 chr6 89991982 89992144 -99287410 + MIR SINE MIR 14 170 -92 320 327 10 0 chr6 89992393 89992497 -99287057 + MIR SINE MIR 158 262 0 889 303 77 3 chr6 89992802 89993112 -99286442 - MLT1I LTR MaLR -20 389 57 1633 78 5 14 chr6 89994089 89994306 -99285248 - AluSc SINE Alu -20 289 75 2150 187 18 7 chr6 89994310 89994801 -99284753 - L1P LINE L1 -745 5401 4914 26 0 0 0 chr6 89995107 89995133 -99284421 + AT_rich Low_complexity Low_complexity 1 26 0 1165 167 83 48 chr6 89995642 89995842 -99283712 + MER33 DNA MER1_type 2 218 -2367 561 64 0 0 chr6 89995842 89995920 -99283634 + L1PA3 LINE L1 6075 6152 -3 1165 167 83 48 chr6 89995920 89996031 -99283523 + MER33 DNA MER1_type 218 324 0 208 299 149 0 chr6 89996368 89996455 -99283099 - MIR SINE MIR -1 261 162 388 171 26 0 chr6 89996455 89996538 -99283016 - MLT1J2 LTR MaLR 0 450 320 721 211 105 24 chr6 89996632 89996841 -99282713 - MLT1J2 LTR MaLR -223 227 2 218 308 51 0 chr6 89996850 89996928 -99282626 - MIR SINE MIR -113 149 68 252 59 0 0 chr6 89998600 89998634 -99280920 + (TA)n Simple_repeat Simple_repeat 2 35 0 210 37 0 0 chr6 89998663 89998690 -99280864 + (T)n Simple_repeat Simple_repeat 1 27 0 240 354 42 0 chr6 89999658 89999754 -99279800 - MIR SINE MIR -75 133 34 2162 95 0 0 chr6 90000319 90000630 -99278924 + AluSq SINE Alu 1 311 0 23 33 0 0 chr6 90001136 90001166 -99278388 + AT_rich Low_complexity Low_complexity 1 30 0 647 160 100 0 chr6 90001188 90001338 -99278216 + Charlie5 DNA MER1_type 2421 2585 -27 1803 171 3 16 chr6 90001823 90002132 -99277422 + AluSx SINE Alu 1 305 -7 211 372 66 33 chr6 90002136 90002319 -99277235 - L2 LINE L2 -197 3075 2887 441 337 54 48 chr6 90002477 90002809 -99276745 - L2 LINE L2 -612 2702 2369 547 144 0 0 chr6 90003193 90003283 -99276271 - AluJ/FRAM SINE Alu -3 309 220 203 316 66 0 chr6 90003860 90003936 -99275618 - MIR SINE MIR -180 82 2 1597 188 11 3 chr6 90006625 90006912 -99272642 - AluJb SINE Alu -23 289 1 1195 202 8 26 chr6 90007058 90007325 -99272229 - L1MEd LINE L1 -1949 4180 3919 1284 220 149 50 chr6 90007330 90007797 -99271757 + MER74B LTR ERVL 5 525 -97 1868 171 3 7 chr6 90007797 90008107 -99271447 - AluJb SINE Alu -3 309 1 1284 220 149 50 chr6 90008107 90008134 -99271420 + MER74B LTR ERVL 525 548 -74 2879 244 71 26 chr6 90008209 90009265 -99270289 - L1MEd LINE L1 -2202 3927 2824 213 289 79 44 chr6 90009345 90009459 -99270095 + L2 LINE L2 3195 3312 -1 185 220 119 0 chr6 90010046 90010105 -99269449 + MIR3 SINE MIR 115 180 -28 2261 111 0 3 chr6 90010259 90010566 -99268988 + AluSc SINE Alu 4 309 0 696 245 82 33 chr6 90010578 90010884 -99268670 - L1MEd LINE L1 -4924 1195 875 331 215 13 13 chr6 90010951 90011030 -99268524 + HsTC2 DNA Tc2 1801 1879 -19 372 351 170 12 chr6 90011216 90011475 -99268079 - L1MEd LINE L1 -5578 541 242 290 247 0 0 chr6 90011576 90011653 -99267901 + L1MEd LINE L1 103 179 -5940 1119 98 0 0 chr6 90011861 90012004 -99267550 - AluSq/x SINE Alu -170 143 1 2075 92 0 26 chr6 90012220 90012525 -99267029 - AluY SINE Alu -14 297 1 186 280 252 28 chr6 90012662 90012769 -99266785 - MIR3 SINE MIR -72 136 6 256 386 104 24 chr6 90014297 90014595 -99264959 + L2 LINE L2 2448 2769 -545 22 0 0 0 chr6 90016129 90016151 -99263403 + AT_rich Low_complexity Low_complexity 1 22 0 337 338 37 0 chr6 90016568 90016704 -99262850 + MIR SINE MIR 71 211 -51 555 99 0 0 chr6 90016850 90016921 -99262633 - tRNA-Phe-TTC tRNA tRNA -5 71 1 2092 171 34 44 chr6 90018002 90018412 -99261142 - MER47B DNA MER2_type 0 418 13 723 143 42 8 chr6 90018876 90018995 -99260559 + MER20 DNA MER1_type 1 123 -96 30 0 0 0 chr6 90019500 90019530 -99260024 + AT_rich Low_complexity Low_complexity 1 30 0 480 130 26 0 chr6 90019682 90019759 -99259795 + MER5A DNA MER1_type 27 105 -84 24 0 0 0 chr6 90021623 90021647 -99257907 + AT_rich Low_complexity Low_complexity 1 24 0 2118 106 0 0 chr6 90022746 90023028 -99256526 - AluSg SINE Alu -25 285 4 22 0 0 0 chr6 90023033 90023055 -99256499 + AT_rich Low_complexity Low_complexity 1 22 0 604 313 35 31 chr6 90023364 90023623 -99255931 - MIR SINE MIR 0 262 3 243 301 183 0 chr6 90023739 90023832 -99255722 + L2 LINE L2 3201 3310 -3 21 95 0 0 chr6 90024023 90024086 -99255468 + AT_rich Low_complexity Low_complexity 1 63 0 321 277 206 5 chr6 90025082 90025266 -99254288 + MIR SINE MIR 14 234 -28 2250 77 10 14 chr6 90026093 90026390 -99253164 + AluY SINE Alu 1 296 -15 356 194 28 0 chr6 90026549 90026621 -99252933 + Tigger2 DNA MER2_type 2 75 -2643 896 249 0 6 chr6 90026652 90026829 -99252725 - MER8 DNA MER2_type -62 177 2 974 251 101 48 chr6 90026874 90027369 -99252185 - HAL1 LINE L1 -344 2163 1643 26 50 0 0 chr6 90027781 90027821 -99251733 + AT_rich Low_complexity Low_complexity 1 40 0 407 212 80 0 chr6 90028499 90028612 -99250942 + L1ME3 LINE L1 6043 6163 -1 40983 34 18 1 chr6 90029756 90035770 -99243784 + L1PA3 LINE L1 2 6146 -9 1135 207 69 42 chr6 90037080 90037414 -99242140 - MER2 DNA MER2_type 0 344 2 462 252 19 0 chr6 90038246 90038349 -99241205 - L2 LINE L2 -528 2786 2682 496 233 142 0 chr6 90038356 90038476 -99241078 + MER58A DNA MER1_type 1 137 0 1004 295 42 26 chr6 90038518 90038898 -99240656 - L2 LINE L2 -640 2674 2289 223 291 0 0 chr6 90039464 90039519 -99240035 + L2 LINE L2 3006 3060 -212 207 340 0 0 chr6 90040233 90040339 -99239215 + T-rich Low_complexity Low_complexity 1 106 0 * 220 256 13 13 chr6 90040281 90040359 -99239195 + CT-rich Low_complexity Low_complexity 3 80 0 1683 132 4 8 chr6 90042909 90043160 -99236394 + AluSq SINE Alu 5 254 -59 27 0 0 0 chr6 90043170 90043197 -99236357 + AT_rich Low_complexity Low_complexity 1 27 0 505 341 76 18 chr6 90043732 90043955 -99235599 - MIR SINE MIR 0 262 27 26 0 0 0 chr6 90044037 90044063 -99235491 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr6 90044550 90044585 -99234969 + AT_rich Low_complexity Low_complexity 1 35 0 343 285 128 28 chr6 90045225 90045404 -99234150 + MIR SINE MIR 20 216 -46 22 0 0 0 chr6 90045704 90045726 -99233828 + AT_rich Low_complexity Low_complexity 1 22 0 777 145 94 14 chr6 90045779 90045917 -99233637 + AluJo SINE Alu 126 274 -38 1221 208 21 45 chr6 90046483 90046772 -99232782 + AluJo SINE Alu 1 282 -30 207 100 0 0 chr6 90046987 90047017 -99232537 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 251 303 33 41 chr6 90047036 90047158 -99232396 - L1MC/D LINE L1 -2164 5644 5524 203 61 30 0 chr6 90047602 90047635 -99231919 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 496 138 46 100 chr6 90049211 90049315 -99230239 - L1MD1 LINE L1 0 6242 6145 2123 84 10 7 chr6 90049315 90049612 -99229942 - AluY SINE Alu -13 298 1 496 138 46 100 chr6 90049612 90049637 -99229917 - L1MD1 LINE L1 -97 6145 6120 520 235 7 52 chr6 90049638 90049791 -99229763 - L1MD2 LINE L1 -79 6280 6135 12865 148 56 13 chr6 90049809 90051646 -99227908 + Tigger1 DNA MER2_type 31 1987 -431 2155 123 0 0 chr6 90051646 90051947 -99227607 + AluY SINE Alu 1 301 -10 12865 148 56 13 chr6 90051947 90052399 -99227155 + Tigger1 DNA MER2_type 1987 2418 0 3743 167 31 10 chr6 90052402 90053129 -99226425 - L1MD2 LINE L1 -260 5982 5237 36 62 0 0 chr6 90054397 90054461 -99225093 + AT_rich Low_complexity Low_complexity 1 64 0 571 203 20 20 chr6 90055502 90055655 -99223899 - L1ME4a LINE L1 -244 5877 5725 328 243 154 29 chr6 90056040 90056176 -99223378 - MIR SINE MIR -42 220 68 589 315 199 6 chr6 90056261 90056588 -99222966 - L2 LINE L2 -2 3311 2922 23 68 0 0 chr6 90057002 90057046 -99222508 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr6 90057945 90057974 -99221580 + AT_rich Low_complexity Low_complexity 1 29 0 446 296 66 47 chr6 90058965 90059178 -99220376 + L2 LINE L2 3097 3313 0 1009 212 97 18 chr6 90059919 90060136 -99219418 + Tigger7 DNA MER2_type 1 234 -499 582 200 9 0 chr6 90060137 90060242 -99219312 + Tigger7 DNA MER2_type 2482 2587 0 23 0 7 0 chr6 90060472 90060528 -99219026 + AT_rich Low_complexity Low_complexity 1 23 0 446 194 0 125 chr6 90060664 90060808 -99218746 + FLAM_A SINE Alu 1 126 -7 189 0 0 0 chr6 90065200 90065221 -99214333 + (T)n Simple_repeat Simple_repeat 1 21 0 1139 94 0 19 chr6 90065501 90065661 -99213893 + AluSc SINE Alu 85 241 -68 680 69 0 0 chr6 90065661 90065748 -99213806 + AluSc SINE Alu 207 293 -16 24 53 0 0 chr6 90065890 90065928 -99213626 + AT_rich Low_complexity Low_complexity 1 38 0 198 321 152 18 chr6 90067087 90067199 -99212355 + L2 LINE L2 3137 3263 -9 278 148 19 0 chr6 90067596 90067650 -99211904 + GA-rich Low_complexity Low_complexity 4 58 0 37 39 0 0 chr6 90069480 90069531 -99210023 + AT_rich Low_complexity Low_complexity 1 51 0 270 298 21 99 chr6 90070589 90070780 -99208774 + MIR SINE MIR 37 212 -50 223 289 37 96 chr6 90071093 90071228 -99208326 + MIR SINE MIR 45 171 -91 375 57 19 0 chr6 90077913 90077966 -99201588 - MADE1 DNA Mariner -26 54 1 596 101 3 0 chr6 90078382 90078472 -99201082 + L1MA2 LINE L1 5641 5732 -571 853 120 0 0 chr6 90078476 90078593 -99200961 - AluSg/x SINE Alu -17 293 177 2103 116 0 3 chr6 90078887 90079180 -99200374 - AluSx SINE Alu -20 292 1 3647 109 24 3 chr6 90079180 90079757 -99199797 + L1MA2 LINE L1 5716 6304 0 24 32 0 0 chr6 90079757 90079788 -99199766 + AT_rich Low_complexity Low_complexity 1 31 0 821 216 82 10 chr6 90079865 90080059 -99199495 + MIR SINE MIR 48 255 -7 535 259 138 45 chr6 90080114 90080338 -99199216 + MIR SINE MIR 3 247 -15 1285 209 0 74 chr6 90080806 90081132 -99198422 - AluJo SINE Alu -10 302 1 21 89 0 0 chr6 90081335 90081391 -99198163 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr6 90082008 90082029 -99197525 + AT_rich Low_complexity Low_complexity 1 21 0 2281 60 0 3 chr6 90082255 90082566 -99196988 + AluY SINE Alu 1 310 0 180 0 0 0 chr6 90083632 90083652 -99195902 + (CAA)n Simple_repeat Simple_repeat 2 21 0 299 202 64 28 chr6 90084574 90084683 -99194871 - L1MC4 LINE L1 0 8042 7930 314 290 60 10 chr6 90085150 90085250 -99194304 + MIR3 SINE MIR 104 208 0 356 211 252 8 chr6 90085580 90085703 -99193851 + MIR SINE MIR 82 234 -28 28 29 0 0 chr6 90085753 90085788 -99193766 + AT_rich Low_complexity Low_complexity 1 35 0 247 340 122 6 chr6 90085968 90086124 -99193430 - L2 LINE L2 -551 2763 2590 857 143 17 16 chr6 90086761 90087000 -99192554 + CT-rich Low_complexity Low_complexity 1 239 0 186 143 0 0 chr6 90087003 90087038 -99192516 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 594 276 20 37 chr6 90087047 90087293 -99192261 - L1MC4 LINE L1 -364 7678 7437 361 373 53 0 chr6 90087935 90088085 -99191469 + MIR SINE MIR 23 180 -82 260 274 0 0 chr6 90088360 90088422 -99191132 + MLT1K LTR MaLR 511 572 -16 2301 143 5 16 chr6 90088558 90088937 -99190617 - THE1C LTR MaLR 0 375 1 190 346 74 12 chr6 90088953 90089034 -99190520 + L2 LINE L2 2802 2887 -427 2528 222 50 41 chr6 90089045 90089806 -99189748 - L1ME3 LINE L1 -2 6160 5393 419 271 32 4 chr6 90089792 90090071 -99189483 + L1M4 LINE L1 4623 4947 -1199 * 608 194 9 0 chr6 90090094 90090202 -99189352 + FLAM_A SINE Alu 1 109 -33 189 74 0 0 chr6 90090207 90090234 -99189320 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 587 213 87 83 chr6 90090239 90090425 -99189129 + L1M4 LINE L1 5003 5192 -954 2276 90 3 10 chr6 90090425 90090736 -99188818 + AluSg SINE Alu 1 309 -1 587 213 87 83 chr6 90090736 90090849 -99188705 + L1M4 LINE L1 5192 5303 -843 238 141 42 42 chr6 90091581 90091652 -99187902 + (TTTA)n Simple_repeat Simple_repeat 3 73 0 1540 238 108 41 chr6 90091691 90092281 -99187273 + MLT1G LTR MaLR 2 574 -16 2060 140 0 0 chr6 90092289 90092597 -99186957 + AluSx SINE Alu 1 308 -4 1388 212 22 4 chr6 90093154 90093432 -99186122 + AluJb SINE Alu 4 286 -26 2077 230 39 112 chr6 90093691 90094698 -99184856 - L1M4 LINE L1 -1781 4365 3433 1256 233 43 12 chr6 90094719 90095041 -99184513 - L1MEc LINE L1 -6029 367 36 222 128 0 0 chr6 90095412 90095451 -99184103 + (T)n Simple_repeat Simple_repeat 1 39 0 2898 144 13 19 chr6 90096775 90097304 -99182250 - L1MA9 LINE L1 0 6312 5787 24 32 0 0 chr6 90097526 90097557 -99181997 + GC_rich Low_complexity Low_complexity 1 31 0 183 42 0 0 chr6 90097776 90097800 -99181754 + (GGA)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chr6 90097909 90097934 -99181620 + GC_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr6 90101440 90101465 -99178089 + (CA)n Simple_repeat Simple_repeat 2 26 0 391 313 117 43 chr6 90101479 90101805 -99177749 - L3b LINE CR1 -72 1511 1162 245 186 14 0 chr6 90103506 90103576 -99175978 + CT-rich Low_complexity Low_complexity 4 74 0 23 54 0 0 chr6 90104105 90104142 -99175412 + AT_rich Low_complexity Low_complexity 1 37 0 28 86 0 0 chr6 90104848 90104918 -99174636 + AT_rich Low_complexity Low_complexity 1 70 0 323 274 37 18 chr6 90105168 90105332 -99174222 - L1MC5 LINE L1 -36 7925 7759 244 283 50 0 chr6 90105424 90105484 -99174070 - L2 LINE L2 -6 3266 3204 2591 101 6 8 chr6 90106470 90106835 -99172719 + THE1B LTR MaLR 1 364 0 352 216 247 0 chr6 90107044 90107141 -99172413 - MIR3 SINE MIR -4 204 84 485 316 134 10 chr6 90107441 90107650 -99171904 + MIR SINE MIR 12 246 -16 695 318 19 5 chr6 90107669 90107883 -99171671 - MIR SINE MIR -31 231 15 223 257 0 54 chr6 90107907 90107981 -99171573 + MIR SINE MIR 193 262 0 294 250 57 79 chr6 90108054 90108194 -99171360 - MIR SINE MIR -114 148 12 26 50 0 0 chr6 90109472 90109512 -99170042 + GC_rich Low_complexity Low_complexity 1 40 0 183 80 0 0 chr6 90109552 90109577 -99169977 + (CTCG)n Simple_repeat Simple_repeat 2 26 0 186 43 0 0 chr6 90112482 90112505 -99167049 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 424 302 0 31 chr6 90112514 90112643 -99166911 + MIR3 SINE MIR 30 154 -54 228 217 33 76 chr6 90113601 90113693 -99165861 + MIR SINE MIR 120 207 -55 1413 161 90 21 chr6 90113874 90114153 -99165401 + AluJb SINE Alu 3 300 -12 368 226 29 3 chr6 90115700 90115855 -99163699 - MER2 DNA MER2_type 0 345 142 951 181 11 11 chr6 90115955 90116137 -99163417 - MER2 DNA MER2_type -163 182 1 28 29 0 0 chr6 90116988 90117023 -99162531 + AT_rich Low_complexity Low_complexity 1 35 0 351 330 171 6 chr6 90117184 90117366 -99162188 + MIR SINE MIR 32 242 -20 229 143 48 16 chr6 90117547 90117631 -99161923 + (TATAA)n Simple_repeat Simple_repeat 1 86 0 417 330 103 0 chr6 90118100 90118285 -99161269 - MIR SINE MIR -34 228 25 2093 141 0 0 chr6 90118288 90118594 -99160960 - AluSx SINE Alu -4 308 3 457 275 104 16 chr6 90119091 90119284 -99160270 + MER58C DNA MER1_type 1 210 -5 1406 186 36 30 chr6 90119590 90119891 -99159663 + AluJo SINE Alu 1 303 -9 390 286 127 61 chr6 90120303 90120516 -99159038 + MIR SINE MIR 32 258 -4 25 0 0 0 chr6 90120714 90120739 -99158815 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 90120940 90120962 -99158592 + AT_rich Low_complexity Low_complexity 1 22 0 378 0 0 0 chr6 90120970 90121012 -99158542 + (TG)n Simple_repeat Simple_repeat 1 42 0 1435 293 117 69 chr6 90121329 90122827 -99156727 - L2 LINE L2 -420 2894 1326 2035 89 17 10 chr6 90123062 90123354 -99156200 + AluSx SINE Alu 1 294 -18 265 289 105 26 chr6 90123500 90123614 -99155940 - L2 LINE L2 -1 3271 3149 1566 181 166 13 chr6 90124994 90125447 -99154107 - Charlie1b DNA MER1_type -1 522 1 194 329 27 82 chr6 90126775 90126921 -99152633 + L2 LINE L2 2602 2739 -575 306 0 0 0 chr6 90127151 90127185 -99152369 + (TA)n Simple_repeat Simple_repeat 1 34 0 298 178 89 44 chr6 90127261 90127351 -99152203 - L1MEc LINE L1 -4094 2513 2420 * 448 230 135 3 chr6 90127318 90127560 -99151994 - L1M3c LINE L1 -4556 1801 1269 809 241 45 27 chr6 90128016 90128240 -99151314 - MIR SINE MIR -1 261 34 24 32 0 0 chr6 90128337 90128368 -99151186 + AT_rich Low_complexity Low_complexity 1 31 0 455 230 0 11 chr6 90128427 90128514 -99151040 - Tigger7 DNA MER2_type -6 2481 2396 1048 210 37 30 chr6 90129209 90129503 -99150051 - L1MD3 LINE L1 0 7995 7654 186 321 25 12 chr6 90129630 90129711 -99149843 + L2 LINE L2 2308 2389 -925 262 323 57 24 chr6 90129874 90129998 -99149556 - L2 LINE L2 0 3313 3186 1099 186 15 10 chr6 90130048 90130252 -99149302 - MER20 DNA MER1_type 0 219 15 210 374 50 20 chr6 90130360 90130558 -99148996 + L2 LINE L2 2826 3029 -243 190 257 14 43 chr6 90130620 90130690 -99148864 + L2 LINE L2 3169 3236 -77 25 83 0 0 chr6 90132091 90132151 -99147403 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr6 90132491 90132514 -99147040 + AT_rich Low_complexity Low_complexity 1 23 0 2000 116 14 7 chr6 90133239 90133531 -99146023 - AluSx SINE Alu -18 294 1 196 273 45 0 chr6 90133534 90133578 -99145976 - MIR SINE MIR -63 145 100 769 296 77 36 chr6 90134037 90134603 -99144951 + L2 LINE L2 2719 3303 -10 23 97 0 0 chr6 90134652 90134724 -99144830 + AT_rich Low_complexity Low_complexity 1 72 0 766 243 132 58 chr6 90136077 90136320 -99143234 + MIR SINE MIR 2 262 0 2009 117 38 10 chr6 90137206 90137497 -99142057 + AluSx SINE Alu 3 301 -11 343 318 87 40 chr6 90138500 90138799 -99140755 + L1M4 LINE L1 4771 5083 -1063 1964 127 6 47 chr6 90139645 90139967 -99139587 - AluSq SINE Alu 0 313 5 998 247 75 60 chr6 90140019 90140556 -99138998 - L2 LINE L2 -49 3264 2725 266 319 14 0 chr6 90140589 90140661 -99138893 - L2 LINE L2 -224 3048 2976 189 132 26 0 chr6 90142781 90142819 -99136735 - L2 LINE L2 -6 3307 3269 23 0 0 0 chr6 90143032 90143055 -99136499 + AT_rich Low_complexity Low_complexity 1 23 0 258 292 67 45 chr6 90143249 90143338 -99136216 + MIR SINE MIR 21 111 -97 1088 236 14 0 chr6 90145294 90145506 -99134048 + MER58A DNA MER1_type 1 215 -9 594 255 51 60 chr6 90146228 90146444 -99133110 + MIR SINE MIR 5 218 -44 25 65 0 0 chr6 90146493 90146539 -99133015 + AT_rich Low_complexity Low_complexity 1 46 0 246 329 110 82 chr6 90146928 90147220 -99132334 - L2 LINE L2 0 3272 2973 447 334 226 11 chr6 90147359 90148070 -99131484 - L2 LINE L2 -537 2777 1862 1714 182 66 17 chr6 90148070 90148417 -99131137 + MLT1A1 LTR MaLR 1 364 -1 447 334 226 11 chr6 90148417 90148531 -99131023 - L2 LINE L2 -1452 1862 1774 214 355 129 16 chr6 90148633 90148757 -99130797 + L2 LINE L2 3134 3271 -1 288 399 75 0 chr6 90148849 90148982 -99130572 + L2 LINE L2 2854 2996 -317 21 0 0 0 chr6 90148982 90149003 -99130551 + AT_rich Low_complexity Low_complexity 1 21 0 1319 251 118 74 chr6 90149045 90149616 -99129938 + L1MC4 LINE L1 7278 7889 -153 2439 75 3 3 chr6 90149616 90149922 -99129632 - AluY SINE Alu -5 306 1 1319 251 118 74 chr6 90149922 90150078 -99129476 + L1MC4 LINE L1 7889 8037 -5 584 192 72 67 chr6 90151189 90151382 -99128172 - LTR45 LTR ERV1 0 525 296 13844 133 50 13 chr6 90152290 90154621 -99124933 + Tigger1 DNA MER2_type 1 2417 -1 2094 141 0 0 chr6 90155319 90155644 -99123910 + AluSx SINE Alu 1 312 0 24 67 0 0 chr6 90155694 90155739 -99123815 + AT_rich Low_complexity Low_complexity 1 45 0 381 264 0 50 chr6 90155790 90155911 -99123643 + L2 LINE L2 2163 2277 -1037 241 378 55 12 chr6 90157284 90157448 -99122106 + MIR3 SINE MIR 3 173 -35 13127 125 67 29 chr6 90157729 90158530 -99121024 + Tigger1 DNA MER2_type 1 770 -1648 2174 98 10 0 chr6 90158530 90158825 -99120729 - AluSq SINE Alu -15 298 1 13127 125 67 29 chr6 90158825 90159442 -99120112 + Tigger1 DNA MER2_type 770 1362 -1056 2383 93 10 0 chr6 90159442 90159752 -99119802 + AluSq SINE Alu 1 313 0 13127 125 67 29 chr6 90159752 90160662 -99118892 + Tigger1 DNA MER2_type 1362 2418 0 1445 191 67 7 chr6 90160732 90160895 -99118659 - AluJo SINE Alu -12 300 111 186 71 0 0 chr6 90160895 90160923 -99118631 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 1445 191 67 7 chr6 90160923 90161042 -99118512 - AluJo SINE Alu -201 111 1 2133 116 10 6 chr6 90161202 90161513 -99118041 - AluSx SINE Alu 0 312 1 1640 157 66 3 chr6 90161942 90162228 -99117326 + AluJb SINE Alu 1 304 -8 2692 141 34 2 chr6 90162469 90162917 -99116637 - L1PA16 LINE L1 -9 6860 6399 10403 135 24 5 chr6 90162917 90165756 -99113798 + L1MA2 LINE L1 3419 6304 0 2278 101 15 0 chr6 90165772 90166099 -99113455 - L1PA16 LINE L1 -452 6417 6086 * 4365 152 17 9 chr6 90166090 90166830 -99112724 - L1PA15 LINE L1 -137 6028 5280 4163 44 2 6 chr6 90166830 90167353 -99112201 - L1PA4 LINE L1 -3 6152 5632 29821 67 3 0 chr6 90167353 90171215 -99108339 - L1P LINE L1 -2268 3878 7 3069 187 19 18 chr6 90171217 90171897 -99107657 - L1PA16 LINE L1 -848 6001 5321 2154 123 0 0 chr6 90171898 90172183 -99107371 - AluSc SINE Alu -20 289 5 7768 183 24 43 chr6 90172193 90173855 -99105699 - L1PA16 LINE L1 -2364 4485 2858 1479 170 4 0 chr6 90173855 90174085 -99105469 - AluJo SINE Alu -21 291 61 7768 183 24 43 chr6 90174085 90175208 -99104346 - L1PA16 LINE L1 -3991 2858 1716 1041 172 0 0 chr6 90175208 90175371 -99104183 - AluSg/x SINE Alu -21 291 129 514 242 75 25 chr6 90175535 90175696 -99103858 - MIR SINE MIR 0 262 94 1730 162 78 25 chr6 90175878 90176236 -99103318 + MER51B LTR ERV1 1 377 0 1161 287 35 18 chr6 90176304 90176760 -99102794 - LTR16B LTR ERVL 0 464 1 2345 104 3 0 chr6 90177041 90177350 -99102204 + AluSx SINE Alu 1 310 -2 220 205 0 0 chr6 90177555 90177594 -99101960 + (CATA)n Simple_repeat Simple_repeat 3 41 0 2194 155 8 13 chr6 90177594 90177981 -99101573 - L1M2 LINE L1 -524 5788 5404 2143 152 60 31 chr6 90177982 90178495 -99101059 - MLT2A2 LTR ERVL -1 553 1 2332 185 35 8 chr6 90178500 90178982 -99100572 - L1M2 LINE L1 -743 5403 4909 2273 73 0 48 chr6 90179001 90179317 -99100237 + AluY SINE Alu 1 301 -10 401 241 0 23 chr6 90179348 90179471 -99100083 - L1M4 LINE L1 -1225 4921 4804 1452 169 99 0 chr6 90180755 90181027 -99098527 - AluSx SINE Alu -13 299 1 600 325 94 0 chr6 90181691 90181946 -99097608 - HsTC2 DNA Tc2 -1013 885 607 184 420 11 0 chr6 90183582 90183670 -99095884 - MIR3 SINE MIR -117 91 3 313 281 41 58 chr6 90183723 90183844 -99095710 + MIR SINE MIR 65 183 -79 521 277 202 20 chr6 90184053 90184345 -99095209 + L3b LINE CR1 1104 1448 -135 180 111 0 0 chr6 90184587 90184614 -99094940 + (T)n Simple_repeat Simple_repeat 1 27 0 340 363 143 25 chr6 90184913 90185277 -99094277 - L1MC/D LINE L1 -1988 5820 5414 313 280 67 13 chr6 90185419 90185569 -99093985 - L1M4 LINE L1 -1533 4613 4456 223 217 0 0 chr6 90185922 90185968 -99093586 - L2 LINE L2 -2 3270 3225 5266 200 58 51 chr6 90185976 90187116 -99092438 + Charlie1a DNA MER1_type 6 1160 -1601 2131 99 40 7 chr6 90187116 90187419 -99092135 + AluSq SINE Alu 1 313 0 5266 200 58 51 chr6 90187419 90187718 -99091836 + Charlie1a DNA MER1_type 1160 1455 0 547 338 95 7 chr6 90187720 90188255 -99091299 - L2 LINE L2 -61 3252 2664 1909 322 210 43 chr6 90188255 90189921 -99089633 + L2 LINE L2 1074 3061 -252 434 262 61 30 chr6 90189924 90190088 -99089466 + HAL1 LINE L1 2 170 -2337 326 23 23 0 chr6 90190097 90190140 -99089414 + (CA)n Simple_repeat Simple_repeat 2 45 0 325 213 27 153 chr6 90190146 90190329 -99089225 + L2 LINE L2 3092 3251 -62 671 259 206 7 chr6 90190363 90190664 -99088890 - L2 LINE L2 -862 2452 2092 367 171 29 9 chr6 90190734 90190839 -99088715 - Charlie7 DNA MER1_type -66 2546 2440 1650 237 58 38 chr6 90190841 90191398 -99088156 + HAL1 LINE L1 2 569 -1938 201 322 66 41 chr6 90191957 90192078 -99087476 + L2 LINE L2 2953 3076 -196 3145 274 75 34 chr6 90192525 90192686 -99086868 + L1MEc LINE L1 37 190 -6206 541 200 56 24 chr6 90192686 90192811 -99086743 - FLAM_A SINE Alu -3 130 2 3145 274 75 34 chr6 90192811 90192993 -99086561 + L1MEc LINE L1 190 363 -6033 189 0 0 0 chr6 90192993 90193014 -99086540 + (GA)n Simple_repeat Simple_repeat 2 22 0 3145 274 75 34 chr6 90193014 90194211 -99085343 + L1MEc LINE L1 363 1641 -4755 3495 272 81 39 chr6 90194317 90196880 -99082674 + L1MCc LINE L1 99 2986 -4136 661 153 42 183 chr6 90196902 90197278 -99082276 - MER33 DNA MER1_type -2 322 3 8770 234 62 23 chr6 90197278 90198583 -99080971 + L1MCc LINE L1 2992 4245 -2716 1881 135 3 27 chr6 90198583 90198879 -99080675 + AluSx SINE Alu 1 289 -23 8770 234 62 23 chr6 90198879 90201023 -99078531 + L1MCc LINE L1 4245 6540 -421 7525 132 35 6 chr6 90201023 90202216 -99077338 + HSMAR2 DNA Mariner 2 1229 -73 243 356 11 0 chr6 90202345 90202435 -99077119 + L2 LINE L2 3221 3311 -2 6952 182 15 14 chr6 90203328 90204708 -99074846 + L1PA13 LINE L1 1101 2493 -4304 14605 192 42 7 chr6 90204723 90205075 -99074479 - L1PB1 LINE L1 0 6867 6529 519 31 0 0 chr6 90205075 90205140 -99074414 + (TA)n Simple_repeat Simple_repeat 2 66 0 14605 192 42 7 chr6 90205140 90208522 -99071032 - L1PB1 LINE L1 -338 6529 2590 2130 59 0 0 chr6 90208522 90208792 -99070762 + L1PA7 LINE L1 5881 6150 -4 14605 192 42 7 chr6 90208792 90211471 -99068083 - L1PB1 LINE L1 -4277 2590 6 17668 165 13 19 chr6 90211475 90215021 -99064533 + L1PA13 LINE L1 2483 6006 -808 1754 92 24 8 chr6 90215021 90215269 -99064285 + L1PA10 LINE L1 5909 6163 -5 17668 165 13 19 chr6 90215269 90216074 -99063480 + L1PA13 LINE L1 6006 6814 0 603 308 169 8 chr6 90216581 90216861 -99062693 - L2 LINE L2 -4 3309 3075 345 47 0 0 chr6 90216861 90216904 -99062650 + (TG)n Simple_repeat Simple_repeat 1 43 0 603 308 169 8 chr6 90216904 90217130 -99062424 - L2 LINE L2 -238 3075 2715 214 147 0 0 chr6 90217275 90217309 -99062245 + L2 LINE L2 3239 3272 0 5552 68 3 3 chr6 90217623 90218346 -99061208 - L1PA6 LINE L1 0 6154 5432 372 367 52 52 chr6 90220304 90220628 -99058926 - L2 LINE L2 -3 3269 2946 192 40 0 0 chr6 90220982 90221007 -99058547 + (GA)n Simple_repeat Simple_repeat 2 26 0 36 0 0 0 chr6 90221200 90221236 -99058318 + AT_rich Low_complexity Low_complexity 1 36 0 235 336 109 44 chr6 90221334 90221718 -99057836 - L2 LINE L2 -1729 1585 1177 690 184 102 46 chr6 90222032 90222228 -99057326 + MIR SINE MIR 36 242 -20 506 300 106 34 chr6 90223013 90223503 -99056051 + L1M4 LINE L1 3560 4080 -2066 775 283 72 40 chr6 90223591 90224198 -99055356 + L1M4 LINE L1 4359 4985 -1161 31 44 0 0 chr6 90224217 90224262 -99055292 + AT_rich Low_complexity Low_complexity 1 45 0 306 315 7 35 chr6 90224374 90224517 -99055037 - MLT1L LTR MaLR 0 615 477 31 0 0 0 chr6 90225087 90225118 -99054436 + AT_rich Low_complexity Low_complexity 1 31 0 32 81 0 0 chr6 90225171 90225245 -99054309 + AT_rich Low_complexity Low_complexity 1 74 0 22 35 0 0 chr6 90225284 90225313 -99054241 + AT_rich Low_complexity Low_complexity 1 29 0 753 280 16 5 chr6 90226092 90226281 -99053273 + MIR SINE MIR 72 262 0 223 318 15 0 chr6 90226851 90226917 -99052637 + L3 LINE CR1 1495 1561 -16 24 32 0 0 chr6 90227124 90227155 -99052399 + AT_rich Low_complexity Low_complexity 1 31 0 678 312 30 15 chr6 90227511 90227838 -99051716 - LTR16A LTR ERVL 0 450 50 301 281 73 0 chr6 90230043 90230125 -99049429 + MIR SINE MIR 64 151 -111 423 267 37 37 chr6 90230139 90230300 -99049254 + MER69A DNA AcHobo 2 162 -15 247 230 27 68 chr6 90230308 90230382 -99049172 + MIR SINE MIR 158 228 -34 8485 121 2 17 chr6 90230919 90232239 -99047315 - HSMAR2 DNA Mariner -1 1301 1 22 0 0 0 chr6 90233254 90233276 -99046278 + AT_rich Low_complexity Low_complexity 1 22 0 207 161 0 0 chr6 90233516 90233547 -99046007 + (CA)n Simple_repeat Simple_repeat 2 32 0 288 289 10 10 chr6 90233638 90233735 -99045819 - LTR67 LTR ERVL -17 540 444 365 348 137 0 chr6 90234322 90234483 -99045071 + MIR3 SINE MIR 25 207 -1 631 298 105 17 chr6 90235167 90235405 -99044149 - MIR SINE MIR 0 262 4 385 78 0 0 chr6 90236388 90236439 -99043115 - MER70A LTR ERVL 0 472 422 455 371 32 20 chr6 90236442 90236695 -99042859 + L2 LINE L2 2907 3162 -110 2723 99 11 5 chr6 90236965 90237338 -99042216 + THE1C LTR MaLR 1 375 0 269 235 59 0 chr6 90239109 90239177 -99040377 - MIR SINE MIR -119 143 72 29 84 0 0 chr6 90239236 90239307 -99040247 + AT_rich Low_complexity Low_complexity 1 71 0 2006 143 10 0 chr6 90239931 90240225 -99039329 - AluSx SINE Alu -13 299 3 5224 156 77 22 chr6 90240226 90240610 -99038944 + L1MC3 LINE L1 6715 7076 -709 1758 161 11 0 chr6 90240610 90240916 -99038638 + AluJb SINE Alu 1 309 0 5224 156 77 22 chr6 90240916 90241545 -99038009 + L1MC3 LINE L1 7076 7785 0 1817 222 35 46 chr6 90241542 90242167 -99037387 + L1MC5 LINE L1 7300 7917 -44 * 786 198 19 6 chr6 90244389 90244546 -99035008 - MLT1D LTR MaLR 0 505 347 911 232 16 37 chr6 90244558 90244804 -99034750 - MLT1D LTR MaLR -264 241 1 2297 105 3 0 chr6 90245422 90245728 -99033826 + AluSg SINE Alu 2 308 -2 311 212 260 48 chr6 90245850 90245996 -99033558 + MER69A DNA AcHobo 1 177 0 604 273 27 77 chr6 90246192 90246492 -99033062 + MLT1I LTR MaLR 107 391 -18 2040 105 6 40 chr6 90247216 90247351 -99032203 + AluSq SINE Alu 1 139 -174 2487 67 3 10 chr6 90247351 90247665 -99031889 + AluSp SINE Alu 1 312 -1 2040 105 6 40 chr6 90247665 90247852 -99031702 + AluSq SINE Alu 139 312 -1 407 327 79 9 chr6 90248701 90248875 -99030679 + MIR SINE MIR 23 216 -46 1382 248 124 28 chr6 90248875 90249334 -99030220 + MLT1D LTR MaLR 1 503 -2 407 327 79 9 chr6 90249334 90249373 -99030181 + MIR SINE MIR 216 251 -11 272 263 141 0 chr6 90249629 90249728 -99029826 - MER20B DNA MER1_type -627 156 44 22 56 0 0 chr6 90250012 90250048 -99029506 + AT_rich Low_complexity Low_complexity 1 36 0 600 279 66 27 chr6 90250189 90250447 -99029107 + L1ME4a LINE L1 5592 5859 -262 21 36 0 0 chr6 90250464 90250492 -99029062 + AT_rich Low_complexity Low_complexity 1 28 0 5132 177 34 39 chr6 90250499 90250885 -99028669 + L1MB2 LINE L1 4169 4555 -1616 1085 24 0 0 chr6 90250885 90251012 -99028542 - L1PB1 LINE L1 -1 6150 6024 5132 177 34 39 chr6 90251012 90251190 -99028364 + L1MB2 LINE L1 4555 4732 -1439 2104 113 0 0 chr6 90251190 90251499 -99028055 + AluY SINE Alu 1 309 0 5132 177 34 39 chr6 90251499 90252552 -99027002 + L1MB2 LINE L1 4732 5788 -383 1343 181 122 3 chr6 90252552 90252644 -99026910 + MER44D DNA MER2_type 1 81 -2410 357 24 0 0 chr6 90252644 90252686 -99026868 + (GA)n Simple_repeat Simple_repeat 1 42 0 1343 181 122 3 chr6 90252686 90252896 -99026658 + MER44D DNA MER2_type 81 609 0 5132 177 34 39 chr6 90252896 90252956 -99026598 + L1MB2 LINE L1 5788 5847 -324 1850 163 3 0 chr6 90252956 90253239 -99026315 + AluSx SINE Alu 6 289 -23 5132 177 34 39 chr6 90253239 90253550 -99026004 + L1MB2 LINE L1 5847 6145 -26 286 230 175 16 chr6 90253808 90253934 -99025620 + L1ME4a LINE L1 5937 6082 -39 3861 121 30 3 chr6 90253936 90254539 -99025015 + Tigger1 DNA MER2_type 1800 2418 0 1784 185 40 42 chr6 90254539 90254894 -99024660 - L1MB8 LINE L1 -33 6145 5790 1594 209 70 11 chr6 90254894 90255268 -99024286 + MSTD LTR MaLR 1 396 0 1784 185 40 42 chr6 90255268 90255339 -99024215 - L1MB8 LINE L1 -388 5790 5720 281 284 32 0 chr6 90256489 90256584 -99022970 - MLT1J2 LTR MaLR -7 443 346 419 174 246 29 chr6 90256671 90256809 -99022745 - MLT1J2 LTR MaLR -282 168 1 299 204 136 136 chr6 90257268 90257339 -99022215 + MIR SINE MIR 3 73 -189 1746 150 7 4 chr6 90257339 90257647 -99021907 - AluSx SINE Alu 0 309 1 299 204 136 136 chr6 90257647 90257736 -99021818 + MIR SINE MIR 72 164 -98 248 223 85 53 chr6 90258208 90258302 -99021252 + LTR33A LTR ERVL 420 516 -7 280 169 169 0 chr6 90258310 90258375 -99021179 + MIR SINE MIR 160 235 -27 266 321 18 18 chr6 90259364 90259473 -99020081 + MIR SINE MIR 128 236 -26 1849 156 3 14 chr6 90260682 90260970 -99018584 - AluJo SINE Alu -24 288 4 453 192 8 16 chr6 90260990 90261115 -99018439 - L1MB8 LINE L1 -6 6172 6049 702 179 11 62 chr6 90261117 90261296 -99018258 - L1M4 LINE L1 -1792 4354 4185 21 0 0 0 chr6 90261498 90261519 -99018035 + AT_rich Low_complexity Low_complexity 1 21 0 257 229 16 16 chr6 90262331 90262392 -99017162 + L2 LINE L2 3168 3228 -44 200 304 92 88 chr6 90262425 90262675 -99016879 - L2 LINE L2 -23 3249 2999 216 0 0 0 chr6 90262732 90262756 -99016798 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 457 313 56 20 chr6 90262782 90262980 -99016574 + MIR SINE MIR 48 252 -10 38 39 0 0 chr6 90263045 90263097 -99016457 + AT_rich Low_complexity Low_complexity 1 52 0 236 208 109 40 chr6 90263098 90263199 -99016355 + HAL1 LINE L1 2295 2402 -105 1474 216 77 128 chr6 90263448 90264264 -99015290 + MER20B DNA MER1_type 1 775 -8 232 297 18 90 chr6 90264286 90264397 -99015157 - L3b LINE CR1 -200 1383 1281 327 49 0 0 chr6 90264528 90264569 -99014985 + (T)n Simple_repeat Simple_repeat 1 41 0 185 222 111 37 chr6 90265170 90265224 -99014330 - L2 LINE L2 -5 3308 3251 * 691 172 0 0 chr6 90265191 90265307 -99014247 - MIR SINE MIR -24 238 123 682 244 54 49 chr6 90266546 90266751 -99012803 + MIR SINE MIR 20 225 -37 1486 286 54 37 chr6 90266836 90267371 -99012183 - MER77 LTR ERV1 -8 597 54 214 197 56 28 chr6 90267566 90267637 -99011917 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 252 289 126 0 chr6 90267640 90267799 -99011755 - L1MC4 LINE L1 -143 7899 7721 232 234 0 0 chr6 90268012 90268059 -99011495 - L2 LINE L2 -16 3256 3210 277 325 103 34 chr6 90268806 90268923 -99010631 - L2 LINE L2 -12 3260 3136 399 296 56 8 chr6 90269988 90270113 -99009441 + L2 LINE L2 3141 3271 -1 221 333 108 8 chr6 90270101 90270221 -99009333 + L3 LINE CR1 569 700 -877 * 244 238 12 25 chr6 90270244 90270324 -99009230 - MER116 DNA Mariner -1 79 1 2272 73 0 0 chr6 90270413 90270687 -99008867 + AluSc SINE Alu 1 274 -35 219 36 0 0 chr6 90270692 90270720 -99008834 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 573 302 156 36 chr6 90270776 90271084 -99008470 + L3 LINE CR1 1228 1572 -5 216 242 179 32 chr6 90271535 90271630 -99007924 - L2 LINE L2 -4 3268 3160 2086 148 5 30 chr6 90271668 90272041 -99007513 - THE1B LTR MaLR 0 364 1 377 337 118 0 chr6 90272064 90272233 -99007321 - MIR SINE MIR -72 190 2 555 311 105 18 chr6 90272357 90272576 -99006978 - MIR SINE MIR -6 256 19 3685 167 69 22 chr6 90272584 90273353 -99006201 - L1MB7 LINE L1 -41 6143 5138 2082 128 13 3 chr6 90273353 90273651 -99005903 - AluSx SINE Alu -11 301 1 3685 167 69 22 chr6 90273651 90273734 -99005820 - L1MB7 LINE L1 -1046 5138 5060 21 36 0 0 chr6 90274038 90274066 -99005488 + AT_rich Low_complexity Low_complexity 1 28 0 422 323 43 12 chr6 90274457 90274618 -99004936 + MER91B DNA MER1_type 20 185 -5 492 276 156 40 chr6 90274930 90275380 -99004174 + L1ME LINE L1 5289 5790 -331 22 35 0 0 chr6 90275384 90275413 -99004141 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr6 90275434 90275457 -99004097 + (CA)n Simple_repeat Simple_repeat 2 24 0 306 0 0 0 chr6 90276473 90276507 -99003047 + (T)n Simple_repeat Simple_repeat 1 34 0 474 270 108 7 chr6 90278581 90278729 -99000825 + MIR SINE MIR 88 250 -12 21 0 0 0 chr6 90278747 90278768 -99000786 + AT_rich Low_complexity Low_complexity 1 21 0 2247 139 8 35 chr6 90280846 90281220 -98998334 + THE1B LTR MaLR 1 364 0 11148 93 12 22 chr6 90281220 90282817 -98996737 + THE1B-int LTR MaLR 1 1580 0 2253 127 16 32 chr6 90282817 90283187 -98996367 + THE1B LTR MaLR 1 364 0 367 256 44 11 chr6 90285046 90285136 -98994418 + L2 LINE L2 3221 3313 0 198 0 0 0 chr6 90286590 90286612 -98992942 + (A)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr6 90287044 90287067 -98992487 + AT_rich Low_complexity Low_complexity 1 23 0 197 314 81 0 chr6 90287813 90287899 -98991655 + MIR SINE MIR 59 151 -111 582 245 162 9 chr6 90287914 90288130 -98991424 + L2 LINE L2 3063 3311 -2 193 28 0 56 chr6 90288621 90288657 -98990897 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 895 195 6 24 chr6 90288660 90288824 -98990730 + AluJb SINE Alu 124 284 -28 244 0 0 0 chr6 90288824 90288851 -98990703 + (TAAAA)n Simple_repeat Simple_repeat 2 125 0 2404 72 7 0 chr6 90289774 90290079 -98989475 - AluY SINE Alu -4 307 1 476 319 111 32 chr6 90291657 90291999 -98987555 + L1ME4a LINE L1 5534 5902 -219 419 286 53 26 chr6 90292861 90293050 -98986504 + MIR SINE MIR 2 195 -67 304 267 19 29 chr6 90293879 90293984 -98985570 + L1M4 LINE L1 2213 2316 -3830 471 262 67 0 chr6 90293984 90294133 -98985421 + L1ME3A LINE L1 5727 5885 -285 22 35 0 0 chr6 90294321 90294350 -98985204 + AT_rich Low_complexity Low_complexity 1 29 0 389 228 161 52 chr6 90294494 90294687 -98984867 + L1MEd LINE L1 1311 1524 -4892 185 65 32 0 chr6 90294713 90294744 -98984810 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 347 192 153 11 chr6 90294747 90294999 -98984555 + L1MEd LINE L1 1429 1931 -856 23 54 0 0 chr6 90295085 90295122 -98984432 + AT_rich Low_complexity Low_complexity 1 37 0 1207 183 104 3 chr6 90295181 90295536 -98984018 - Charlie5 DNA MER1_type 0 2624 2234 365 192 183 0 chr6 90295533 90295637 -98983917 - Charlie5 DNA MER1_type -2485 127 5 * 2412 86 0 0 chr6 90296030 90296322 -98983232 - AluSx SINE Alu -16 296 5 1438 126 129 65 chr6 90298676 90298809 -98980745 + AluSx SINE Alu 1 124 -188 2028 132 0 0 chr6 90298809 90299122 -98980432 + AluY SINE Alu 1 313 0 1438 126 129 65 chr6 90299122 90299265 -98980289 + AluSx SINE Alu 124 296 -16 205 299 130 0 chr6 90299411 90299488 -98980066 + MIR3 SINE MIR 102 188 -20 610 215 20 100 chr6 90299648 90299848 -98979706 - MIR SINE MIR -73 189 6 255 265 103 56 chr6 90300218 90300361 -98979193 - MIR SINE MIR -65 143 44 22 35 0 0 chr6 90300886 90300915 -98978639 + AT_rich Low_complexity Low_complexity 1 29 0 406 318 15 15 chr6 90301658 90301790 -98977764 + MIR SINE MIR 5 136 -126 700 278 37 5 chr6 90301815 90302031 -98977523 + MIR SINE MIR 15 237 -25 196 322 0 0 chr6 90303096 90303155 -98976399 - MIR SINE MIR 0 262 204 2140 152 14 7 chr6 90303255 90303669 -98975885 + L1MB2 LINE L1 5755 6171 0 618 201 60 34 chr6 90303673 90303822 -98975732 - MLT1I LTR MaLR -248 161 9 324 221 35 44 chr6 90305200 90305313 -98974241 - MLT1I LTR MaLR 0 409 298 277 299 145 0 chr6 90306222 90306339 -98973215 + MIR SINE MIR 20 153 -109 286 229 14 14 chr6 90306349 90306419 -98973135 + MLT1L LTR MaLR 4 73 -542 198 71 0 0 chr6 90306433 90306461 -98973093 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 259 246 161 50 chr6 90306607 90306867 -98972687 + MLT1J LTR MaLR 223 511 0 928 134 0 0 chr6 90307807 90307934 -98971620 + AluJb SINE Alu 1 127 -185 2721 175 134 28 chr6 90308036 90308490 -98971064 + L1MB7 LINE L1 5054 5458 -726 2359 51 0 7 chr6 90308490 90308783 -98970771 + AluY SINE Alu 1 291 -20 2721 175 134 28 chr6 90308783 90309353 -98970201 + L1MB7 LINE L1 5458 6182 -2 347 331 57 27 chr6 90309355 90309759 -98969795 - L1ME LINE L1 -569 5552 5098 265 324 167 10 chr6 90311973 90312177 -98967377 + MIR SINE MIR 13 248 -14 940 256 32 26 chr6 90314428 90314768 -98964786 + L1ME1 LINE L1 3579 3920 -2226 659 228 54 0 chr6 90314769 90314953 -98964601 + L1ME1 LINE L1 5753 5946 -220 388 218 15 157 chr6 90315132 90315394 -98964160 - L1MC4 LINE L1 -926 7062 6811 28 61 0 0 chr6 90315455 90315504 -98964050 + AT_rich Low_complexity Low_complexity 1 49 0 188 67 33 0 chr6 90316551 90316581 -98962973 + (GA)n Simple_repeat Simple_repeat 2 32 0 243 175 44 191 chr6 90316613 90316796 -98962758 - MER112 DNA MER1_type -104 156 1 891 176 33 0 chr6 90316851 90317004 -98962550 - FRAM SINE Alu -19 157 1 246 32 0 0 chr6 90317277 90317308 -98962246 + (CA)n Simple_repeat Simple_repeat 2 32 0 234 156 0 0 chr6 90317308 90317353 -98962201 + GA-rich Low_complexity Low_complexity 1 45 0 536 177 32 57 chr6 90317700 90317858 -98961696 + MER31A LTR ERV1 332 485 0 830 194 17 29 chr6 90317877 90318052 -98961502 - MER5B DNA MER1_type -5 173 1 * 879 308 128 37 chr6 90318052 90318563 -98960991 - L3 LINE CR1 -560 1017 460 616 345 123 35 chr6 90318567 90319461 -98960093 + L2 LINE L2 2049 3022 -250 426 173 18 73 chr6 90319487 90319597 -98959957 + MER31B LTR ERV1 227 330 -136 181 256 0 0 chr6 90319734 90319773 -98959781 + MIR SINE MIR 218 256 -6 * 200 359 78 28 chr6 90319770 90319912 -98959642 - L3 LINE CR1 -1122 455 307 737 251 44 25 chr6 90319928 90320131 -98959423 - MER58A DNA MER1_type -16 208 2 1837 165 12 0 chr6 90320280 90320608 -98958946 - MER2 DNA MER2_type -13 332 1 300 200 0 0 chr6 90320935 90321000 -98958554 + CT-rich Low_complexity Low_complexity 4 68 0 1174 85 11 6 chr6 90321001 90321178 -98958376 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1608 195 7 7 chr6 90321186 90321463 -98958091 - AluJo SINE Alu -35 277 1 487 144 79 173 chr6 90322292 90322431 -98957123 + L2 LINE L2 3187 3312 -1 227 246 138 0 chr6 90323232 90323297 -98956257 + L2 LINE L2 3240 3313 0 913 291 5 0 chr6 90323770 90323990 -98955564 + MIR SINE MIR 15 235 -27 5413 78 8 0 chr6 90324607 90325351 -98954203 - L1P LINE L1 -5374 772 23 284 216 27 0 chr6 90325351 90325425 -98954129 - MER41A LTR ERV1 -339 215 140 824 86 0 8 chr6 90325493 90325621 -98953933 - MER41B LTR ERV1 -508 127 1 7151 100 25 7 chr6 90325621 90326717 -98952837 - MER41B-int LTR ERV1 0 5946 4831 5391 102 7 33 chr6 90326738 90327608 -98951946 - L1PA10 LINE L1 0 6168 5322 * 6758 203 31 18 chr6 90327602 90328991 -98950563 - L1P3 LINE L1 -3752 2709 1204 188 86 29 0 chr6 90328991 90329026 -98950528 + (TTG)n Simple_repeat Simple_repeat 1 36 0 6758 203 31 18 chr6 90329026 90330241 -98949313 - L1P3 LINE L1 -5257 1204 7 2498 136 38 12 chr6 90330241 90330667 -98948887 - MER41A-int LTR ERV1 -3343 2603 2167 * 7963 135 25 10 chr6 90330663 90332477 -98947077 - MER41A-int LTR ERV1 -3929 2017 1 1033 103 0 0 chr6 90332477 90332632 -98946922 - MER41A LTR ERV1 0 554 400 2798 223 44 50 chr6 90332699 90336019 -98943535 + L1MB7 LINE L1 2798 6165 -19 990 160 129 44 chr6 90336074 90336299 -98943255 + MLT1D LTR MaLR 262 505 0 372 230 0 0 chr6 90336316 90336390 -98943164 - L2 LINE L2 -1001 2313 2240 432 269 69 15 chr6 90336475 90336605 -98942949 - MIR SINE MIR -96 166 30 737 298 75 85 chr6 90336681 90337372 -98942182 - L2 LINE L2 -1396 1918 1235 939 194 115 32 chr6 90337585 90337838 -98941716 - MER31B LTR ERV1 -91 375 102 1559 206 3 10 chr6 90337841 90338137 -98941417 - AluJb SINE Alu -5 307 14 1158 204 164 53 chr6 90338260 90338785 -98940769 - MER34C LTR ERV1 -2 583 1 259 268 52 72 chr6 90338801 90338898 -98940656 - MER5A DNA MER1_type -18 171 77 429 277 44 6 chr6 90339106 90339265 -98940289 + Charlie8 DNA MER1_type 83 247 -2170 620 333 84 7 chr6 90339355 90339652 -98939902 + L3 LINE CR1 1134 1453 -124 786 160 0 38 chr6 90339824 90339955 -98939599 - FLAM_C SINE Alu -7 126 1 2424 191 60 43 chr6 90340734 90341432 -98938122 - MER106B DNA MER1_type -348 711 2 305 356 11 0 chr6 90342107 90342194 -98937360 - MIR SINE MIR -83 125 38 388 345 125 24 chr6 90342851 90343442 -98936112 - L2 LINE L2 0 3272 2635 2943 189 35 30 chr6 90343575 90344396 -98935158 + MER106B DNA MER1_type 61 885 -174 24717 48 1 2 chr6 90344401 90348326 -98931228 - L1PA7 LINE L1 -4 6150 2233 209 345 60 0 chr6 90349308 90349392 -98930162 - L2 LINE L2 -17 3296 3208 2062 141 3 7 chr6 90349626 90349925 -98929629 + AluSx SINE Alu 1 298 -14 199 235 139 35 chr6 90350424 90350539 -98929015 - MIR SINE MIR -34 228 102 1491 210 16 38 chr6 90351083 90351455 -98928099 + MLT1A2 LTR MaLR 4 367 -7 336 269 223 0 chr6 90353066 90353196 -98926358 - MIR3 SINE MIR -23 185 27 207 0 0 0 chr6 90353303 90353326 -98926228 + (CAT)n Simple_repeat Simple_repeat 1 23 0 395 238 238 12 chr6 90353694 90353937 -98925617 - Charlie2 DNA MER1_type -594 2268 1971 741 230 80 5 chr6 90353937 90354137 -98925417 + LTR33 LTR ERVL 1 215 -306 388 286 90 32 chr6 90354178 90354367 -98925187 + LTR33 LTR ERVL 304 503 -18 271 289 0 0 chr6 90354406 90354489 -98925065 - Charlie2 DNA MER1_type -893 1969 1887 875 179 34 0 chr6 90354500 90354679 -98924875 - MER3 DNA MER1_type -6 203 19 36 53 0 0 chr6 90354817 90354874 -98924680 + AT_rich Low_complexity Low_complexity 1 57 0 1456 209 163 11 chr6 90354985 90355420 -98924134 - MLT1D LTR MaLR 0 505 5 334 282 78 3 chr6 90355456 90355597 -98923957 + MLT1H LTR MaLR 74 200 -349 2319 74 0 29 chr6 90355935 90356244 -98923310 - AluY SINE Alu -11 300 1 2223 124 30 39 chr6 90356277 90356641 -98922913 + THE1B LTR MaLR 1 361 -3 10485 92 44 1 chr6 90356641 90358150 -98921404 + THE1B-int LTR MaLR 7 1580 0 2445 105 30 22 chr6 90358150 90358511 -98921043 + THE1B LTR MaLR 1 364 0 381 266 89 71 chr6 90359311 90359649 -98919905 + MLT1H-int LTR MaLR 1028 1371 0 303 307 33 19 chr6 90359696 90359852 -98919702 + MLT1H LTR MaLR 31 231 -318 255 222 81 30 chr6 90360030 90360129 -98919425 + MLT1H LTR MaLR 406 509 -46 984 126 33 0 chr6 90360133 90360284 -98919270 - MER70A LTR ERVL 0 472 317 984 241 270 20 chr6 90360305 90360893 -98918661 - Charlie2b DNA MER1_type -1455 1327 593 324 272 92 26 chr6 90360934 90361129 -98918425 - Charlie2b DNA MER1_type -2480 302 95 1420 100 122 59 chr6 90361153 90361424 -98918130 - L1PA16 LINE L1 -9 6157 5870 228 296 10 31 chr6 90362578 90362676 -98916878 + MLT1K LTR MaLR 12 107 -481 1501 194 31 28 chr6 90364489 90364739 -98914815 + MLT1A1 LTR MaLR 5 258 -107 2548 146 26 9 chr6 90364739 90365158 -98914396 - MSTB LTR MaLR 0 426 1 1501 194 31 28 chr6 90365158 90365267 -98914287 + MLT1A1 LTR MaLR 258 365 0 786 248 48 26 chr6 90365458 90365626 -98913928 + MIR SINE MIR 28 204 -58 1235 195 0 30 chr6 90365626 90365857 -98913697 - MER58A DNA MER1_type 0 224 1 786 248 48 26 chr6 90365857 90365918 -98913636 + MIR SINE MIR 204 262 0 186 171 0 0 chr6 90365926 90365967 -98913587 + (CAT)n Simple_repeat Simple_repeat 2 42 0 25 0 0 0 chr6 90366658 90366683 -98912871 + AT_rich Low_complexity Low_complexity 1 25 0 2241 91 14 0 chr6 90366869 90367165 -98912389 + AluSc SINE Alu 1 300 -9 417 96 36 24 chr6 90370967 90371050 -98908504 + MLT2B2 LTR ERVL 432 515 0 513 336 39 27 chr6 90373178 90373434 -98906120 + MIR SINE MIR 1 259 -3 460 301 29 7 chr6 90373473 90373609 -98905945 + MIR SINE MIR 32 170 -92 2371 149 48 91 chr6 90374134 90374672 -98904882 + MLT2B2 LTR ERVL 1 515 0 430 248 77 0 chr6 90374756 90374873 -98904681 + MLT1I LTR MaLR 63 188 -221 252 100 0 0 chr6 90375052 90375092 -98904462 + (CA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr6 90375099 90375120 -98904434 + AT_rich Low_complexity Low_complexity 1 21 0 849 169 45 50 chr6 90375397 90375598 -98903956 + MER3 DNA MER1_type 1 200 -9 198 103 0 0 chr6 90375742 90375771 -98903783 + (CA)n Simple_repeat Simple_repeat 1 29 0 22 35 0 0 chr6 90378829 90378858 -98900696 + AT_rich Low_complexity Low_complexity 1 29 0 195 209 0 0 chr6 90378978 90379021 -98900533 + L2 LINE L2 3271 3313 0 358 228 49 16 chr6 90379025 90379148 -98900406 - L1ME4a LINE L1 -187 5934 5808 365 218 42 70 chr6 90380120 90380262 -98899292 - MLT1J1 LTR MaLR -26 420 283 392 131 85 23 chr6 90380378 90380466 -98899088 - MLT1J1 LTR MaLR -322 128 31 281 267 26 17 chr6 90380681 90380797 -98898757 - L1ME4a LINE L1 -484 5637 5521 769 247 110 41 chr6 90380874 90381093 -98898461 + MIR SINE MIR 1 234 -28 2227 171 44 5 chr6 90381423 90381833 -98897721 - MSTB1 LTR MaLR -2 430 5 2044 141 6 10 chr6 90382792 90383105 -98896449 + AluSx SINE Alu 1 312 0 1012 221 121 3 chr6 90383145 90383435 -98896119 - MER5C DNA MER1_type 0 324 1 2086 116 3 0 chr6 90384828 90385120 -98894434 + AluSq SINE Alu 1 293 -20 229 343 66 24 chr6 90385820 90385986 -98893568 + L2 LINE L2 1759 1931 -1383 187 246 0 62 chr6 90387001 90387066 -98892488 - L2 LINE L2 0 3272 3212 2233 172 65 9 chr6 90387210 90387956 -98891598 + LTR1B LTR ERV1 1 826 0 189 195 0 0 chr6 90387956 90387997 -98891557 + (TA)n Simple_repeat Simple_repeat 2 42 0 201 245 20 0 chr6 90389034 90389083 -98890471 - MIR SINE MIR -152 110 61 22 0 0 0 chr6 90389174 90389196 -98890358 + AT_rich Low_complexity Low_complexity 1 22 0 486 262 107 20 chr6 90389869 90390113 -98889441 + L2 LINE L2 3047 3311 -2 417 312 0 9 chr6 90390163 90390272 -98889282 - MIR SINE MIR -153 109 2 938 227 45 42 chr6 90390364 90390868 -98888686 - MER34B LTR ERV1 0 565 5 1991 70 0 12 chr6 90390955 90391212 -98888342 + AluY SINE Alu 42 295 -16 193 326 215 12 chr6 90391213 90391385 -98888169 + MIR SINE MIR 48 254 -8 23 0 0 0 chr6 90392929 90392952 -98886602 + AT_rich Low_complexity Low_complexity 1 23 0 209 301 151 0 chr6 90393333 90393406 -98886148 - L2 LINE L2 0 3272 3189 551 296 51 1 chr6 90393408 90393569 -98885985 + MIR SINE MIR 16 175 -62 259 220 0 20 chr6 90393592 90393642 -98885912 + MER5B DNA MER1_type 13 61 -117 2154 184 45 19 chr6 90394441 90394903 -98884651 - MLT1D LTR MaLR 0 505 32 1602 217 92 103 chr6 90395403 90396232 -98883322 - LTR28 LTR ERV1 0 1020 109 232 208 83 0 chr6 90396308 90396380 -98883174 - MER52A LTR ERV1 -1008 747 670 183 42 0 0 chr6 90397316 90397340 -98882214 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 22 56 0 0 chr6 90398725 90398761 -98880793 + AT_rich Low_complexity Low_complexity 1 36 0 2043 90 40 11 chr6 90398833 90399111 -98880443 + AluSx SINE Alu 4 289 -23 241 302 47 28 chr6 90400977 90401083 -98878471 + MIR3 SINE MIR 6 113 -95 248 51 0 26 chr6 90401371 90401410 -98878144 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 2907 41 0 0 chr6 90401410 90401773 -98877781 - L1PA4 LINE L1 -24 6131 5769 189 0 0 0 chr6 90403017 90403038 -98876516 + (TTA)n Simple_repeat Simple_repeat 2 22 0 321 340 141 19 chr6 90403151 90403307 -98876247 + MIR SINE MIR 44 218 -44 276 244 0 13 chr6 90404767 90404845 -98874709 - MLT1I LTR MaLR -268 141 65 592 325 61 24 chr6 90404951 90405246 -98874308 - L3 LINE CR1 -8 1569 1264 400 262 233 12 chr6 90405316 90405488 -98874066 + MIR SINE MIR 52 261 -1 475 348 89 30 chr6 90405593 90406088 -98873466 - L3 LINE CR1 -493 1084 561 * 1007 333 101 46 chr6 90406073 90406993 -98872561 - L2 LINE L2 -2 3270 2298 732 253 32 0 chr6 90407016 90407174 -98872380 - MIR SINE MIR -30 232 70 1962 155 134 13 chr6 90407175 90407556 -98871998 - MSTA LTR MaLR 0 428 2 315 233 0 0 chr6 90407569 90407629 -98871925 - L2 LINE L2 -1028 2286 2227 1289 192 40 75 chr6 90407699 90408168 -98871386 + LTR37B LTR ERV1 5 457 -11 194 314 145 19 chr6 90408598 90408757 -98870797 - L3 LINE CR1 -1102 475 297 1770 156 13 3 chr6 90408892 90409200 -98870354 + MLT1A1 LTR MaLR 1 311 -54 207 114 0 0 chr6 90409207 90409242 -98870312 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 7598 30 0 0 chr6 90409245 90410696 -98868858 - L1PA2 LINE L1 0 6155 4705 852 61 0 0 chr6 90410696 90410810 -98868744 + L1PA2 LINE L1 4572 4685 -1461 469 124 2 8 chr6 90410810 90410898 -98868656 + MLT1A1 LTR MaLR 294 365 0 357 335 79 0 chr6 90411160 90411312 -98868242 - MIR SINE MIR -22 240 77 282 237 59 93 chr6 90411772 90411890 -98867664 - L2 LINE L2 -9 3304 3191 360 310 70 0 chr6 90411950 90412150 -98867404 + L1ME LINE L1 5538 5751 -370 203 250 22 22 chr6 90413241 90413316 -98866238 + (TAAA)n Simple_repeat Simple_repeat 1 78 -14 2756 82 3 0 chr6 90413316 90413670 -98865884 + THE1A LTR MaLR 1 355 0 203 250 22 22 chr6 90413670 90413686 -98865868 + (TAAA)n Simple_repeat Simple_repeat 77 92 0 22 0 0 0 chr6 90414753 90414775 -98864779 + AT_rich Low_complexity Low_complexity 1 22 0 3042 170 7 6 chr6 90415483 90416024 -98863530 + MER68 LTR ERV1 13 554 -8 931 280 153 21 chr6 90416854 90417389 -98862165 + MLT1L LTR MaLR 2 607 -8 247 209 55 22 chr6 90417435 90417526 -98862028 + LTR16A1 LTR ERVL 8 101 -356 327 197 0 0 chr6 90417577 90417638 -98861916 + LTR16A LTR ERVL 194 254 -196 2540 222 26 4 chr6 90417638 90418169 -98861385 + REP3 LTR ERV 1 543 -19 443 302 65 0 chr6 90418188 90418357 -98861197 + LTR16A LTR ERVL 250 429 -21 1258 312 75 12 chr6 90418370 90418969 -98860585 + HERV16 LTR ERVL 2 638 -4358 759 333 27 8 chr6 90419008 90419269 -98860285 + HERV16 LTR ERVL 2816 3081 -1915 2071 125 9 108 chr6 90419578 90420011 -98859543 + MLT1B LTR MaLR 1 390 0 3052 151 104 38 chr6 90420250 90420932 -98858622 - LTR8A LTR ERV1 0 727 1 483 81 0 0 chr6 90421088 90421150 -98858404 + Alu SINE Alu 1 62 -248 1565 108 0 0 chr6 90421150 90421353 -98858201 + AluSg/x SINE Alu 95 297 -13 23 0 0 0 chr6 90421855 90421878 -98857676 + AT_rich Low_complexity Low_complexity 1 23 0 212 343 15 0 chr6 90422895 90422962 -98856592 + MIR SINE MIR 58 125 -83 24 32 0 0 chr6 90423000 90423031 -98856523 + AT_rich Low_complexity Low_complexity 1 31 0 281 224 0 0 chr6 90423353 90423411 -98856143 - L2 LINE L2 -2 3270 3213 182 264 57 0 chr6 90423991 90424044 -98855510 - L2 LINE L2 -97 3216 3161 234 281 89 20 chr6 90424920 90425066 -98854488 + MER103 DNA DNA 9 164 -2 27 0 0 0 chr6 90425704 90425731 -98853823 + AT_rich Low_complexity Low_complexity 1 27 0 213 39 0 0 chr6 90426075 90426101 -98853453 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 529 282 71 47 chr6 90427165 90427335 -98852219 + MER5A DNA MER1_type 16 189 0 198 0 0 0 chr6 90427397 90427419 -98852135 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 260 323 86 89 chr6 90427546 90427883 -98851671 + L2 LINE L2 2937 3272 0 23 0 0 0 chr6 90428619 90428642 -98850912 + AT_rich Low_complexity Low_complexity 1 23 0 8765 120 34 1 chr6 90428933 90430330 -98849224 - Tigger1 DNA MER2_type -3 2415 973 3563 163 27 1 chr6 90430901 90431570 -98847984 + Tigger2 DNA MER2_type 3 688 -2030 38599 72 6 2 chr6 90431570 90437233 -98842321 + L1P2 LINE L1 1 5688 -466 5335 45 10 1 chr6 90437231 90437937 -98841617 - L1PA5 LINE L1 -1685 4461 3750 * 7465 54 0 0 chr6 90437937 90439650 -98839904 + L1PA5 LINE L1 4441 6154 0 11731 139 24 12 chr6 90439650 90441667 -98837887 + Tigger2 DNA MER2_type 677 2716 -2 22 80 0 0 chr6 90441848 90441898 -98837656 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr6 90442248 90442270 -98837284 + AT_rich Low_complexity Low_complexity 1 22 0 287 316 70 19 chr6 90443211 90443369 -98836185 - L2 LINE L2 -553 2761 2596 540 217 16 60 chr6 90444114 90444298 -98835256 + MER69A DNA AcHobo 1 176 -1 16513 63 5 8 chr6 90447657 90450635 -98828919 - L1PA6 LINE L1 -2 6152 3182 403 258 26 39 chr6 90450953 90451145 -98828409 + MIR SINE MIR 4 230 -32 257 263 20 20 chr6 90451148 90451247 -98828307 - L1ME LINE L1 -305 5816 5718 485 62 0 0 chr6 90451451 90451516 -98828038 + Alu SINE Alu 232 296 -14 39585 64 7 2 chr6 90451517 90457668 -98821886 + L1PA5 LINE L1 1 6177 0 2218 106 27 0 chr6 90457770 90458063 -98821491 - AluSq SINE Alu -12 301 1 1393 239 17 10 chr6 90458140 90458546 -98821008 + L1ME1 LINE L1 2647 3055 -3091 440 170 71 9 chr6 90458542 90458654 -98820900 + L1ME1 LINE L1 4658 4776 -1370 * 284 179 0 0 chr6 90458682 90458738 -98820816 + L1ME1 LINE L1 5128 5183 -963 1287 180 48 52 chr6 90458738 90459333 -98820221 - LTR48B LTR ERV1 0 644 1 2180 175 31 18 chr6 90459434 90460180 -98819374 - LTR48B-int LTR ERV1 -164 6167 5367 8503 180 38 12 chr6 90460183 90462937 -98816617 - L1PA16 LINE L1 -22 6144 3325 5334 172 66 77 chr6 90462937 90463408 -98816146 - LTR48B-int LTR ERV1 -948 5383 4908 2554 91 8 56 chr6 90463408 90463492 -98816062 - THE1C LTR MaLR 0 375 288 1888 126 7 4 chr6 90463492 90463762 -98815792 - AluSx SINE Alu -13 299 29 2554 91 8 56 chr6 90463762 90464071 -98815483 - THE1C LTR MaLR -87 288 1 5334 172 66 77 chr6 90464071 90464643 -98814911 - LTR48B-int LTR ERV1 -1423 4908 4331 2319 68 3 3 chr6 90464643 90464938 -98814616 + AluY SINE Alu 1 295 -16 5334 172 66 77 chr6 90464938 90465593 -98813961 - LTR48B-int LTR ERV1 -2000 4331 3703 357 225 71 48 chr6 90465613 90465864 -98813690 - LTR48B-int LTR ERV1 -1929 3672 2712 2463 208 65 25 chr6 90465864 90466643 -98812911 + L1ME1 LINE L1 5172 5975 -191 1668 213 43 55 chr6 90466683 90467213 -98812341 - MER34 LTR ERV1 -18 524 1 446 234 73 0 chr6 90467216 90467340 -98812214 + L1MA10 LINE L1 6175 6307 -27 1135 153 68 75 chr6 90467351 90467672 -98811882 + LTR56 LTR ERV1 11 329 -116 1641 220 6 8 chr6 90467905 90468259 -98811295 - MER4D LTR ERV1 0 903 551 801 184 19 5 chr6 90468260 90468434 -98811120 - MER4E LTR ERV1 -619 284 1 650 100 90 0 chr6 90468811 90468911 -98810643 - HY1 scRNA scRNA -3 109 1 606 205 22 76 chr6 90469648 90469833 -98809721 + MER5B DNA MER1_type 4 178 0 363 250 97 16 chr6 90470523 90470647 -98808907 + MIR SINE MIR 111 244 -18 1808 124 4 8 chr6 90470666 90470923 -98808631 - AluSx SINE Alu -8 304 49 2084 155 0 0 chr6 90473877 90474167 -98805387 - AluSx SINE Alu -22 290 1 2242 135 66 0 chr6 90474438 90474771 -98804783 - LTR18A LTR ERVL -2 355 1 20454 153 12 1 chr6 90474774 90478063 -98801491 - HERVL18 LTR ERVL -2 6045 2720 1145 148 64 2 chr6 90478062 90478322 -98801232 - HERVL18 LTR ERVL -3595 2452 2119 * 8150 177 12 7 chr6 90478321 90480045 -98799509 - HERVL18 LTR ERVL -4237 1810 9 2136 150 66 3 chr6 90480059 90480393 -98799161 - LTR18A LTR ERVL 0 357 3 2347 109 6 0 chr6 90480999 90481310 -98798244 - AluSq SINE Alu 0 313 1 54 40 0 0 chr6 90481318 90481393 -98798161 + AT_rich Low_complexity Low_complexity 1 75 0 293 306 48 48 chr6 90482296 90482482 -98797072 + LTR16A LTR ERVL 260 445 -5 229 295 11 11 chr6 90482761 90482856 -98796698 - L1MEc LINE L1 -2721 3494 3400 396 261 113 86 chr6 90482937 90483228 -98796326 - L1MEc LINE L1 -2878 3337 3039 13145 118 39 8 chr6 90483609 90484295 -98795259 - Tigger1 DNA MER2_type -149 2269 1606 1626 203 38 0 chr6 90484295 90484586 -98794968 - AluSx SINE Alu -10 302 1 13145 118 39 8 chr6 90484586 90486036 -98793518 - Tigger1 DNA MER2_type -812 1606 66 40784 50 4 2 chr6 90486483 90492619 -98786935 - L1PA4 LINE L1 -3 6152 4 23 0 0 0 chr6 90492771 90492794 -98786760 + AT_rich Low_complexity Low_complexity 1 23 0 472 344 54 4 chr6 90494261 90494502 -98785052 - L1MEc LINE L1 -3983 2413 2161 2266 105 3 3 chr6 90494539 90494845 -98784709 - AluSq SINE Alu -7 306 1 261 354 28 0 chr6 90494949 90495161 -98784393 - HAL1 LINE L1 -1032 1475 1258 2029 129 11 0 chr6 90495542 90495820 -98783734 - AluSx SINE Alu -31 281 1 204 232 0 14 chr6 90496772 90496841 -98782713 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 435 127 13 25 chr6 90496843 90496922 -98782632 + MER53 DNA DNA 1 78 -111 3126 208 111 34 chr6 90497104 90498543 -98781011 - L1ME1 LINE L1 -53 6128 4557 483 308 61 12 chr6 90499830 90500148 -98779406 + MLT1J LTR MaLR 20 442 -69 299 200 43 0 chr6 90500147 90500217 -98779337 - LTR49 LTR ERV1 -72 523 451 * 257 303 27 141 chr6 90500529 90500714 -98778840 + MIR SINE MIR 38 207 -7 355 266 173 34 chr6 90500991 90501228 -98778326 - MER102b DNA MER1_type -29 312 43 28 0 0 0 chr6 90503109 90503137 -98776417 + AT_rich Low_complexity Low_complexity 1 28 0 2214 118 3 0 chr6 90503341 90503646 -98775908 - AluSx SINE Alu -6 306 1 385 252 126 39 chr6 90504075 90504281 -98775273 + HAL1 LINE L1 1697 1920 -587 1385 170 57 4 chr6 90504407 90504672 -98774882 + MLT1A1 LTR MaLR 87 365 0 402 115 0 92 chr6 90504876 90504963 -98774591 + L1MC1 LINE L1 6255 6333 0 229 229 169 66 chr6 90505113 90505296 -98774258 + HAL1 LINE L1 2306 2507 0 952 143 26 0 chr6 90505475 90505629 -98773925 + MLT1A2 LTR MaLR 1 158 -216 685 187 15 30 chr6 90505911 90506063 -98773491 + MLT1B LTR MaLR 225 374 0 929 190 82 0 chr6 90506064 90506248 -98773306 + MER58A DNA MER1_type 20 218 -6 305 307 83 52 chr6 90506575 90507018 -98772536 + L1 LINE L1 2844 3300 -2846 29 0 0 0 chr6 90507881 90507910 -98771644 + AT_rich Low_complexity Low_complexity 1 29 0 2057 170 8 8 chr6 90508206 90508564 -98770990 + MLT2D LTR ERVL 1 358 -56 441 0 0 0 chr6 90508565 90508614 -98770940 + (TC)n Simple_repeat Simple_repeat 2 50 0 419 0 20 0 chr6 90508613 90508664 -98770890 + (TA)n Simple_repeat Simple_repeat 1 52 0 * 391 314 59 9 chr6 90508683 90508903 -98770651 + L1 LINE L1 3623 3853 -2293 226 174 22 0 chr6 90509142 90509188 -98770366 + MLT2D LTR ERVL 417 463 -1 2114 147 5 41 chr6 90509188 90509577 -98769977 - THE1C LTR MaLR 0 375 1 24 53 0 0 chr6 90509876 90509914 -98769640 + AT_rich Low_complexity Low_complexity 1 38 0 2620 110 10 12 chr6 90509924 90510333 -98769221 - L1PA16 LINE L1 0 6166 5759 1339 198 9 37 chr6 90510351 90510699 -98768855 + L1 LINE L1 4364 4701 -1445 259 271 83 23 chr6 90510694 90510827 -98768727 - L1ME4a LINE L1 -16 6105 5965 * 804 200 87 47 chr6 90511478 90511778 -98767776 - LTR37A LTR ERV1 -69 357 46 1719 196 81 49 chr6 90511962 90512407 -98767147 + MLT1D LTR MaLR 3 461 -44 955 153 0 140 chr6 90512403 90512639 -98766915 - MLT1D LTR MaLR -302 203 1 * 869 286 40 4 chr6 90513182 90513434 -98766120 + MIR SINE MIR 2 262 0 19377 97 4 14 chr6 90514023 90516852 -98762702 + L1P LINE L1 434 3233 -2913 2344 96 0 0 chr6 90566890 90567191 -98712363 + AluSq SINE Alu 1 301 -12 804 259 67 38 chr6 90567436 90567780 -98711774 - L1M4 LINE L1 -2695 3451 3087 7028 118 44 9 chr6 90567780 90568970 -98710584 + Tigger3b DNA MER2_type 1 1231 0 804 259 67 38 chr6 90568970 90569120 -98710434 - L1M4 LINE L1 -3059 3087 2943 341 288 82 18 chr6 90569354 90569524 -98710030 - L1MEd LINE L1 -5634 485 305 35 0 0 0 chr6 90570825 90570860 -98708694 + AT_rich Low_complexity Low_complexity 1 35 0 3159 212 23 22 chr6 90571583 90572325 -98707229 - L1MB7 LINE L1 0 6886 6144 5517 173 20 30 chr6 90572371 90573591 -98705963 - L1MB7 LINE L1 -2030 4818 3611 25 31 0 0 chr6 90574812 90574844 -98704710 + AT_rich Low_complexity Low_complexity 1 32 0 3186 192 20 17 chr6 90574844 90575798 -98703756 - L1MB7 LINE L1 -3235 3613 2656 6250 173 22 9 chr6 90575801 90576161 -98703393 + L1MA4A LINE L1 4121 4475 -1671 1671 201 0 13 chr6 90576161 90576470 -98703084 + AluJo SINE Alu 1 305 -7 6250 173 22 9 chr6 90576470 90577376 -98702178 + L1MA4A LINE L1 4475 5403 -743 5150 129 32 6 chr6 90577384 90578208 -98701346 + L1MA4A LINE L1 5447 6291 -12 671 304 88 27 chr6 90578208 90578573 -98700981 + Charlie8 DNA MER1_type 64 450 -1967 391 226 54 48 chr6 90578575 90578761 -98700793 + L1 LINE L1 4275 4461 -1685 506 249 162 5 chr6 90578761 90578958 -98700596 + Charlie8 DNA MER1_type 455 682 -1735 1388 297 106 26 chr6 90578996 90579758 -98699796 + Charlie8 DNA MER1_type 1595 2417 0 1344 191 57 0 chr6 90581226 90581488 -98698066 - MER52A LTR ERV1 0 1755 1479 3783 110 118 86 chr6 90581488 90582783 -98696771 + pTR5 LTR ERV1 766 2432 -6 3547 228 146 69 chr6 90582783 90584197 -98695357 - MER52A LTR ERV1 -231 1524 1 3132 158 26 5 chr6 90585676 90586251 -98693303 + L1MB4 LINE L1 5588 6174 -6 378 252 137 37 chr6 90586318 90586588 -98692966 + L1ME LINE L1 5527 5823 -298 190 315 142 24 chr6 90587534 90587661 -98691893 - MIR3 SINE MIR -30 178 37 243 231 31 15 chr6 90588193 90588258 -98691296 + MER5A DNA MER1_type 123 188 -1 3882 146 46 52 chr6 90589138 90589928 -98689626 - LTR1 LTR ERV1 0 785 1 1335 136 15 57 chr6 90591613 90591878 -98687676 - L1MB2 LINE L1 -7 6164 5911 276 281 89 20 chr6 90592252 90592398 -98687156 - MER103 DNA DNA -2 164 9 183 264 57 0 chr6 90593274 90593327 -98686227 + L2 LINE L2 3161 3216 -97 276 224 0 0 chr6 90593907 90593965 -98685589 + L2 LINE L2 3213 3270 -2 24 32 0 0 chr6 90594287 90594318 -98685236 + AT_rich Low_complexity Low_complexity 1 31 0 209 343 15 0 chr6 90594356 90594423 -98685131 - MIR SINE MIR -83 125 58 23 0 0 0 chr6 90595440 90595463 -98684091 + AT_rich Low_complexity Low_complexity 1 23 0 1582 108 0 0 chr6 90595965 90596168 -98683386 - AluSg/x SINE Alu -13 299 97 483 81 0 0 chr6 90596168 90596230 -98683324 - Alu SINE Alu -248 62 1 3033 154 104 38 chr6 90596386 90597068 -98682486 + LTR8A LTR ERV1 1 727 0 2071 125 9 108 chr6 90597307 90597740 -98681814 - MLT1B LTR MaLR 0 390 1 759 333 27 8 chr6 90598049 90598310 -98681244 - HERV16 LTR ERVL -1915 3081 2816 1258 312 75 12 chr6 90598349 90598948 -98680606 - HERV16 LTR ERVL -4358 638 2 443 302 65 0 chr6 90598961 90599130 -98680424 - LTR16A LTR ERVL -21 429 250 2563 220 26 4 chr6 90599149 90599680 -98679874 - REP3 LTR ERV -19 543 1 327 197 0 0 chr6 90599680 90599741 -98679813 - LTR16A LTR ERVL -196 254 194 247 209 55 22 chr6 90599792 90599883 -98679671 - LTR16A1 LTR ERVL -356 101 8 914 282 153 21 chr6 90599929 90600464 -98679090 - MLT1L LTR MaLR -8 607 2 3042 170 7 6 chr6 90601294 90601835 -98677719 - MER68 LTR ERV1 -8 554 13 22 0 0 0 chr6 90602543 90602565 -98676989 + AT_rich Low_complexity Low_complexity 1 22 0 203 250 22 22 chr6 90603632 90603648 -98675906 + (TTTA)n Simple_repeat Simple_repeat 1 16 -76 2736 85 3 0 chr6 90603648 90604002 -98675552 - THE1A LTR MaLR 0 355 1 203 250 22 22 chr6 90604002 90604077 -98675477 + (TTTA)n Simple_repeat Simple_repeat 15 92 0 360 310 70 0 chr6 90605168 90605368 -98674186 - L1ME LINE L1 -370 5751 5538 282 237 59 93 chr6 90605428 90605546 -98674008 + L2 LINE L2 3191 3304 -9 357 335 79 0 chr6 90606006 90606158 -98673396 + MIR SINE MIR 77 240 -22 456 137 2 8 chr6 90606420 90606508 -98673046 - MLT1A1 LTR MaLR 0 365 294 852 61 0 0 chr6 90606508 90606622 -98672932 - L1PA2 LINE L1 -1461 4685 4572 7550 30 2 0 chr6 90606622 90608071 -98671483 + L1PA2 LINE L1 4705 6155 0 207 114 0 0 chr6 90608074 90608109 -98671445 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 1770 156 13 3 chr6 90608116 90608424 -98671130 - MLT1A1 LTR MaLR -54 311 1 194 314 145 19 chr6 90608559 90608718 -98670836 + L3 LINE CR1 297 475 -1102 1289 192 40 75 chr6 90609148 90609617 -98669937 - LTR37B LTR ERV1 -11 457 5 315 233 0 0 chr6 90609687 90609747 -98669807 + L2 LINE L2 2227 2286 -1028 1985 158 135 8 chr6 90609760 90610139 -98669415 + MSTA LTR MaLR 2 428 0 732 253 32 0 chr6 90610140 90610298 -98669256 + MIR SINE MIR 70 232 -30 1007 333 101 46 chr6 90610321 90611241 -98668313 + L2 LINE L2 2298 3270 -2 475 348 89 30 chr6 90611226 90611721 -98667833 + L3 LINE CR1 561 1084 -493 * 400 262 233 12 chr6 90611826 90611998 -98667556 - MIR SINE MIR -1 261 52 592 325 61 24 chr6 90612068 90612363 -98667191 + L3 LINE CR1 1264 1569 -8 276 244 0 13 chr6 90612469 90612547 -98667007 + MLT1I LTR MaLR 65 141 -268 321 340 141 19 chr6 90614007 90614163 -98665391 - MIR SINE MIR -44 218 44 189 0 0 0 chr6 90614276 90614297 -98665257 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2908 41 0 0 chr6 90615541 90615942 -98663612 + L1PA4 LINE L1 5769 6169 0 241 302 47 28 chr6 90616231 90616337 -98663217 - MIR3 SINE MIR -95 113 6 2020 93 40 11 chr6 90618203 90618481 -98661073 - AluSx SINE Alu -23 289 4 22 56 0 0 chr6 90618554 90618590 -98660964 + AT_rich Low_complexity Low_complexity 1 36 0 183 42 0 0 chr6 90619975 90619999 -98659555 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 232 208 83 0 chr6 90620935 90621007 -98658547 + MER52A LTR ERV1 670 747 -1008 458 246 8 8 chr6 90621083 90621201 -98658353 + LTR1 LTR ERV1 109 226 -559 1581 227 58 67 chr6 90621238 90621908 -98657646 + LTR28 LTR ERV1 357 1020 0 2157 180 46 20 chr6 90622408 90622863 -98656691 + MLT1D LTR MaLR 32 498 -7 259 220 0 20 chr6 90623669 90623719 -98655835 - MER5B DNA MER1_type -117 61 13 551 296 51 1 chr6 90623742 90623903 -98655651 - MIR SINE MIR -62 146 16 209 301 151 0 chr6 90623905 90623978 -98655576 + L2 LINE L2 3189 3272 0 23 0 0 0 chr6 90624359 90624382 -98655172 + AT_rich Low_complexity Low_complexity 1 23 0 193 326 215 12 chr6 90625926 90626098 -98653456 - MIR SINE MIR -8 254 48 1982 74 0 12 chr6 90626099 90626356 -98653198 - AluY SINE Alu -16 295 42 938 227 45 42 chr6 90626443 90626947 -98652607 + MER34B LTR ERV1 5 565 0 417 312 0 9 chr6 90627039 90627148 -98652406 + MIR SINE MIR 2 109 -153 486 262 107 20 chr6 90627198 90627442 -98652112 - L2 LINE L2 -2 3311 3047 22 0 0 0 chr6 90628115 90628137 -98651417 + AT_rich Low_complexity Low_complexity 1 22 0 201 245 20 0 chr6 90628228 90628277 -98651277 + MIR SINE MIR 61 110 -152 189 195 0 0 chr6 90629314 90629355 -98650199 + (TA)n Simple_repeat Simple_repeat 1 41 0 2212 172 65 9 chr6 90629355 90630101 -98649453 - LTR1B LTR ERV1 0 826 1 187 246 0 62 chr6 90630235 90630300 -98649254 + L2 LINE L2 3212 3272 0 229 343 66 24 chr6 90631315 90631481 -98648073 - L2 LINE L2 -1383 1931 1759 2086 116 3 0 chr6 90632181 90632473 -98647081 - AluSq SINE Alu -20 293 1 1023 217 121 3 chr6 90633866 90634156 -98645398 + MER5C DNA MER1_type 1 324 0 2044 141 6 10 chr6 90634196 90634509 -98645045 - AluSx SINE Alu 0 312 1 2227 171 44 5 chr6 90635468 90635878 -98643676 + MSTB1 LTR MaLR 5 430 -2 769 247 110 41 chr6 90636209 90636428 -98643126 - MIR SINE MIR -28 234 1 281 267 26 17 chr6 90636505 90636621 -98642933 + L1ME4a LINE L1 5521 5637 -484 392 131 85 23 chr6 90636836 90636924 -98642630 + MLT1J1 LTR MaLR 31 128 -322 365 218 42 70 chr6 90637040 90637182 -98642372 + MLT1J1 LTR MaLR 283 420 -26 358 228 49 16 chr6 90638154 90638277 -98641277 + L1ME4a LINE L1 5808 5934 -187 195 209 0 0 chr6 90638281 90638324 -98641230 - L2 LINE L2 0 3313 3271 22 35 0 0 chr6 90638444 90638473 -98641081 + AT_rich Low_complexity Low_complexity 1 29 0 198 103 0 0 chr6 90641531 90641560 -98637994 + (TG)n Simple_repeat Simple_repeat 1 29 0 936 168 43 48 chr6 90641700 90641909 -98637645 - MER3 DNA MER1_type -1 208 1 21 0 0 0 chr6 90642186 90642207 -98637347 + AT_rich Low_complexity Low_complexity 1 21 0 252 100 0 0 chr6 90642214 90642254 -98637300 + (TG)n Simple_repeat Simple_repeat 2 41 0 430 248 77 0 chr6 90642433 90642550 -98637004 - MLT1I LTR MaLR -221 188 63 2352 151 48 91 chr6 90642634 90643172 -98636382 - MLT2B2 LTR ERVL 0 515 1 460 301 29 7 chr6 90643697 90643833 -98635721 - MIR SINE MIR -92 170 32 513 336 39 27 chr6 90643872 90644128 -98635426 - MIR SINE MIR -3 259 1 417 96 36 24 chr6 90646256 90646339 -98633215 - MLT2B2 LTR ERVL 0 515 432 2232 92 14 0 chr6 90650141 90650436 -98629118 - AluSc SINE Alu -10 299 1 25 0 0 0 chr6 90650622 90650647 -98628907 + AT_rich Low_complexity Low_complexity 1 25 0 186 171 0 0 chr6 90651338 90651379 -98628175 + (ATG)n Simple_repeat Simple_repeat 2 42 0 786 248 48 26 chr6 90651387 90651448 -98628106 - MIR SINE MIR 0 262 204 1235 195 0 30 chr6 90651448 90651679 -98627875 + MER58A DNA MER1_type 1 224 0 786 248 48 26 chr6 90651679 90651847 -98627707 - MIR SINE MIR -58 204 28 1514 192 31 28 chr6 90652038 90652147 -98627407 - MLT1A1 LTR MaLR 0 365 258 2548 146 26 9 chr6 90652147 90652566 -98626988 + MSTB LTR MaLR 1 426 0 1514 192 31 28 chr6 90652566 90652816 -98626738 - MLT1A1 LTR MaLR -107 258 5 228 296 10 31 chr6 90654629 90654727 -98624827 - MLT1K LTR MaLR -481 107 12 1398 103 122 59 chr6 90655881 90656152 -98623402 + L1PA16 LINE L1 5870 6157 -9 343 267 92 26 chr6 90656176 90656371 -98623183 + Charlie2b DNA MER1_type 95 302 -2560 984 241 270 20 chr6 90656412 90657000 -98622554 + Charlie2b DNA MER1_type 593 1327 -1455 984 126 33 0 chr6 90657021 90657172 -98622382 + MER70A LTR ERVL 317 472 0 255 222 81 30 chr6 90657176 90657275 -98622279 - MLT1H LTR MaLR -46 509 406 303 307 33 19 chr6 90657453 90657609 -98621945 - MLT1H LTR MaLR -318 231 31 381 266 89 71 chr6 90657656 90657994 -98621560 - MLT1H-int LTR MaLR 0 1371 1028 2445 105 30 22 chr6 90658794 90659155 -98620399 - THE1B LTR MaLR 0 364 1 10474 93 44 1 chr6 90659155 90660664 -98618890 - THE1B-int LTR MaLR 0 1580 7 2223 124 30 39 chr6 90660664 90661028 -98618526 - THE1B LTR MaLR -3 361 1 2342 71 0 29 chr6 90661061 90661371 -98618183 + AluY SINE Alu 1 301 -10 334 282 78 3 chr6 90661709 90661850 -98617704 - MLT1H LTR MaLR -349 200 74 1456 209 163 11 chr6 90661886 90662321 -98617233 + MLT1D LTR MaLR 5 505 0 36 53 0 0 chr6 90662432 90662489 -98617065 + AT_rich Low_complexity Low_complexity 1 57 0 875 179 34 0 chr6 90662627 90662806 -98616748 + MER3 DNA MER1_type 19 203 -6 271 289 0 0 chr6 90662817 90662900 -98616654 + Charlie2 DNA MER1_type 1887 1969 -893 388 286 90 32 chr6 90662939 90663128 -98616426 - LTR33 LTR ERVL -18 503 304 741 230 80 5 chr6 90663169 90663369 -98616185 - LTR33 LTR ERVL -306 215 1 * 933 243 177 17 chr6 90663369 90663956 -98615598 + Charlie2 DNA MER1_type 1971 2651 -211 593 247 18 0 chr6 90663963 90664129 -98615425 + L1M4 LINE L1 6 174 -6368 3204 156 18 4 chr6 90664129 90664681 -98614873 + L1MB5 LINE L1 5615 6174 0 410 229 45 0 chr6 90664681 90664833 -98614721 + Charlie2 DNA MER1_type 2644 2802 -60 261 222 42 0 chr6 90664833 90664905 -98614649 + MER116 DNA Mariner 2 76 -4 662 242 81 5 chr6 90665078 90665276 -98614278 + MIR SINE MIR 20 232 -30 1717 147 3 57 chr6 90666486 90666800 -98612754 - AluJo SINE Alu -15 297 1 1522 210 73 113 chr6 90667037 90667828 -98611726 + LTR28 LTR ERV1 2 958 -62 479 244 9 9 chr6 90667899 90668014 -98611540 + LTR28 LTR ERV1 905 1019 -1 381 251 206 49 chr6 90668025 90668272 -98611282 + L1ME4a LINE L1 5832 6117 -4 1442 214 4 14 chr6 90668295 90668571 -98610983 - AluJo SINE Alu -39 273 1 246 366 101 34 chr6 90668678 90669085 -98610469 + L2 LINE L2 2151 2584 -730 512 266 198 36 chr6 90669106 90669298 -98610256 - MIR SINE MIR -39 223 1 303 226 95 12 chr6 90669326 90669410 -98610144 - MIR SINE MIR -69 193 103 23 33 0 0 chr6 90669964 90669994 -98609560 + AT_rich Low_complexity Low_complexity 1 30 0 280 290 0 0 chr6 90670154 90670223 -98609331 + CT-rich Low_complexity Low_complexity 2 70 0 195 318 56 24 chr6 90670699 90670825 -98608729 + L2 LINE L2 2228 2357 -957 24 67 0 0 chr6 90671098 90671143 -98608411 + AT_rich Low_complexity Low_complexity 1 45 0 2235 110 3 0 chr6 90671367 90671676 -98607878 - AluY SINE Alu -1 310 1 329 301 197 0 chr6 90671797 90671980 -98607574 + L3 LINE CR1 1338 1556 -21 20422 32 11 2 chr6 90673568 90676841 -98602713 - L1PA3 LINE L1 -5 6150 2856 4565 57 0 11 chr6 90676844 90677462 -98602092 + L1P LINE L1 623 1233 -4913 1495 227 68 26 chr6 90677852 90678342 -98601212 - MER77 LTR ERV1 -5 600 46 458 255 74 50 chr6 90679934 90680232 -98599322 + L1ME4a LINE L1 5710 6014 -107 977 309 157 11 chr6 90680313 90680847 -98598707 - L3 LINE CR1 -141 1436 825 261 333 114 39 chr6 90681196 90681451 -98598103 + L2 LINE L2 2165 2438 -876 368 261 87 17 chr6 90681477 90681592 -98597962 - L2 LINE L2 0 3313 3191 221 213 0 21 chr6 90681809 90681856 -98597698 - L2 LINE L2 -5 3308 3263 189 274 20 0 chr6 90684128 90684179 -98595375 - MIR SINE MIR -55 207 156 229 247 25 25 chr6 90686787 90686868 -98592686 + LTR33A LTR ERVL 415 495 -28 387 241 120 0 chr6 90687053 90687186 -98592368 - MER103 DNA DNA -5 161 13 309 284 81 56 chr6 90687804 90688001 -98591553 + L1M4 LINE L1 2211 2412 -3734 577 152 182 0 chr6 90688756 90688855 -98590699 - FLAM_C SINE Alu -15 118 2 239 311 19 19 chr6 90688947 90689108 -98590446 + L1M4 LINE L1 2671 2831 -3315 225 208 79 50 chr6 90689491 90689592 -98589962 + LTR16C LTR ERVL 357 460 -31 293 345 21 13 chr6 90689770 90690005 -98589549 + HAL1b LINE L1 697 933 -415 251 303 72 19 chr6 90690356 90690676 -98588878 + L1MC4a LINE L1 2183 2519 -3627 329 300 46 21 chr6 90690742 90691069 -98588485 + L1MC4a LINE L1 3914 4248 -1898 292 303 109 28 chr6 90691201 90691696 -98587858 + L1MC4a LINE L1 4457 4991 -1155 242 252 149 0 chr6 90691897 90692004 -98587550 + L1MC4a LINE L1 5254 5376 -2432 919 235 64 21 chr6 90692070 90692398 -98587156 + L1MC4a LINE L1 5514 5855 -1953 1164 163 63 32 chr6 90692402 90692654 -98586900 - MLT1C LTR MaLR -2 465 206 350 141 31 0 chr6 90692661 90692725 -98586829 - MLT2C1 LTR ERVL -331 66 1 348 111 0 0 chr6 90693099 90693153 -98586401 + (CA)n Simple_repeat Simple_repeat 2 55 0 363 322 150 26 chr6 90693679 90693906 -98585648 + L2 LINE L2 2281 2535 -779 192 236 55 0 chr6 90694068 90694123 -98585431 + L2 LINE L2 3215 3272 0 3431 37 0 0 chr6 90695921 90696329 -98583225 - L1PA5 LINE L1 0 6154 5747 278 328 8 32 chr6 90696900 90696916 -98582638 + MER5A DNA MER1_type 2 14 -175 672 167 29 108 chr6 90696916 90697037 -98582517 - MER5A DNA MER1_type -1 188 78 2274 83 3 7 chr6 90697037 90697347 -98582207 - AluSq SINE Alu -12 301 2 672 167 29 108 chr6 90697347 90697420 -98582134 - MER5A DNA MER1_type -111 78 1 385 304 143 0 chr6 90698506 90698667 -98580887 - MIR SINE MIR -71 191 8 33 66 0 0 chr6 90698976 90699037 -98580517 + AT_rich Low_complexity Low_complexity 1 61 0 277 136 68 17 chr6 90699416 90699475 -98580079 + MLT1K LTR MaLR 515 576 -12 2146 106 0 13 chr6 90699477 90699779 -98579775 + AluSq SINE Alu 1 298 -15 224 312 121 45 chr6 90699840 90699997 -98579557 + MIR SINE MIR 68 236 -26 452 264 30 42 chr6 90700065 90700232 -98579322 - MIR SINE MIR -45 217 53 955 158 12 24 chr6 90700438 90700602 -98578952 - L1PA8A LINE L1 -10 6121 5960 422 216 207 19 chr6 90700815 90701028 -98578526 - MIR SINE MIR 0 262 10 805 92 17 0 chr6 90701135 90701254 -98578300 + AluSg/x SINE Alu 189 309 0 21 0 0 0 chr6 90701634 90701655 -98577899 + AT_rich Low_complexity Low_complexity 1 21 0 206 260 0 0 chr6 90703550 90703600 -98575954 + A-rich Low_complexity Low_complexity 5 54 0 186 43 0 0 chr6 90705056 90705079 -98574475 + (TGGA)n Simple_repeat Simple_repeat 2 24 0 913 230 50 91 chr6 90705136 90705597 -98573957 + L1MC4 LINE L1 7450 7891 -151 24 0 0 0 chr6 90705641 90705665 -98573889 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr6 90706538 90706576 -98572978 + AT_rich Low_complexity Low_complexity 1 38 0 620 279 164 31 chr6 90706679 90707062 -98572492 + MLT1J LTR MaLR 26 459 -52 237 301 151 19 chr6 90707216 90707378 -98572176 - MIR3 SINE MIR -51 157 1 1117 23 0 0 chr6 90708178 90708310 -98571244 - L1PA4 LINE L1 -3 6152 6021 24 0 0 0 chr6 90708635 90708659 -98570895 + AT_rich Low_complexity Low_complexity 1 24 0 291 298 9 9 chr6 90708695 90708809 -98570745 + (CATATA)n Simple_repeat Simple_repeat 1 114 0 465 270 56 20 chr6 90709007 90709203 -98570351 + L1MC5 LINE L1 7723 7925 -36 1011 184 153 27 chr6 90710880 90711141 -98568413 + AluJo SINE Alu 1 294 -8 207 0 0 0 chr6 90711386 90711409 -98568145 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 281 254 88 0 chr6 90711409 90711523 -98568031 - L1ME4a LINE L1 -14 6107 5984 528 183 7 70 chr6 90711765 90711876 -98567678 + L1ME1 LINE L1 5140 5242 -904 2145 128 3 23 chr6 90711876 90712220 -98567334 + MER1B DNA MER1_type 1 337 0 528 183 7 70 chr6 90712220 90712250 -98567304 + L1ME1 LINE L1 5242 5272 -874 877 203 28 34 chr6 90712251 90712365 -98567189 + MER8 DNA MER2_type 2 116 -123 2253 107 0 0 chr6 90712365 90712665 -98566889 + AluY SINE Alu 1 300 -11 877 203 28 34 chr6 90712665 90712727 -98566827 + MER8 DNA MER2_type 116 177 -62 395 164 0 41 chr6 90712763 90712836 -98566718 - Tigger2 DNA MER2_type -2647 71 2 2333 244 39 29 chr6 90712880 90713629 -98565925 + L1ME1 LINE L1 5290 6045 -121 366 299 93 34 chr6 90713656 90713924 -98565630 - L1ME LINE L1 -482 5639 5356 1871 238 33 88 chr6 90714063 90714591 -98564963 + L1MC4 LINE L1 7181 7575 -420 2091 88 67 0 chr6 90714591 90714875 -98564679 + AluSg SINE Alu 1 303 -7 1871 238 33 88 chr6 90714875 90715274 -98564280 + L1MC4 LINE L1 7575 7995 0 240 242 49 34 chr6 90715360 90715459 -98564095 + L1MD2 LINE L1 1850 1937 -4603 29 60 0 0 chr6 90715578 90715628 -98563926 + AT_rich Low_complexity Low_complexity 1 50 0 264 277 66 51 chr6 90715856 90715993 -98563561 + L1MD2 LINE L1 4109 4247 -2293 288 342 9 0 chr6 90716041 90716155 -98563399 + L1ME4a LINE L1 5938 6052 -69 4408 16 0 2 chr6 90716594 90717101 -98562453 - L1PA3 LINE L1 -3 6152 5647 995 296 123 92 chr6 90717444 90718476 -98561078 - L3 LINE CR1 -28 1549 486 235 229 34 29 chr6 90718559 90718734 -98560820 + (TA)n Simple_repeat Simple_repeat 1 176 0 216 171 91 23 chr6 90718763 90718851 -98560703 + (TATAG)n Simple_repeat Simple_repeat 2 95 0 336 394 60 28 chr6 90718939 90719155 -98560399 - L3 LINE CR1 -1315 262 40 1900 158 0 3 chr6 90719769 90720078 -98559476 - AluSx SINE Alu 0 308 1 233 250 83 0 chr6 90720093 90720165 -98559389 + MIR3 SINE MIR 82 159 -49 193 360 149 17 chr6 90720506 90720681 -98558873 - MIR SINE MIR -12 250 53 285 319 71 9 chr6 90721081 90721217 -98558337 + L1ME LINE L1 5602 5757 -364 2043 182 33 3 chr6 90721217 90721608 -98557946 - MER57A LTR ERV1 0 403 1 285 319 71 9 chr6 90721608 90721681 -98557873 + L1ME LINE L1 5757 5824 -297 247 327 164 6 chr6 90722409 90722568 -98556986 - MIR3 SINE MIR 0 208 25 706 255 32 0 chr6 90723568 90723725 -98555829 + Charlie1 DNA MER1_type 1 162 -2599 2547 179 109 17 chr6 90723726 90724361 -98555193 + Charlie1 DNA MER1_type 2068 2760 -1 2725 125 41 20 chr6 90724451 90724890 -98554664 + LTR32 LTR ERVL 15 462 -9 2384 86 3 0 chr6 90726069 90726370 -98553184 + AluSx SINE Alu 1 302 -10 3775 190 94 63 chr6 90726649 90727304 -98552250 + L1MD2 LINE L1 4778 5412 -1341 429 103 0 0 chr6 90727304 90727372 -98552182 + L1MA9 LINE L1 6240 6307 -5 3775 190 94 63 chr6 90727372 90728644 -98550910 + L1MD2 LINE L1 5412 6743 -10 845 79 16 0 chr6 90731075 90731201 -98548353 - L1PA12 LINE L1 -732 5436 5309 5079 99 8 3 chr6 90731201 90731931 -98547623 + L1PA12 LINE L1 5434 6167 -1 193 343 50 20 chr6 90732046 90732145 -98547409 + MIR SINE MIR 89 190 -72 1026 174 124 53 chr6 90732809 90733108 -98546446 + MER33 DNA MER1_type 1 320 -4 267 311 66 41 chr6 90734658 90734854 -98544700 + L2 LINE L2 2699 2899 -415 1823 93 58 0 chr6 90736383 90736640 -98542914 + AluSc SINE Alu 35 306 -3 415 259 151 40 chr6 90736923 90737248 -98542306 + L1ME4a LINE L1 5562 5922 -199 2057 255 90 65 chr6 90737506 90737852 -98541702 + L1MC5 LINE L1 5664 6000 -1961 1086 163 25 5 chr6 90737852 90738054 -98541500 + MER3 DNA MER1_type 2 207 -2 2057 255 90 65 chr6 90738054 90739587 -98539967 + L1MC5 LINE L1 6000 7623 -338 903 150 43 0 chr6 90739601 90739741 -98539813 - FRAM SINE Alu -30 146 1 704 233 69 14 chr6 90739742 90740017 -98539537 + L1MC5 LINE L1 7622 7911 -50 441 285 134 22 chr6 90740264 90740443 -98539111 + MIR SINE MIR 63 261 -1 831 266 130 21 chr6 90741061 90741400 -98538154 - HAL1 LINE L1 -626 1881 1506 200 257 191 9 chr6 90741462 90741567 -98537987 - L2 LINE L2 0 3313 3190 248 304 105 62 chr6 90741579 90741836 -98537718 - HAL1 LINE L1 -1018 1489 1222 237 237 126 56 chr6 90741847 90742045 -98537509 - HAL1 LINE L1 -1351 1156 945 716 327 29 25 chr6 90742184 90742670 -98536884 + HERVI LTR ERV1 1448 1935 -5850 480 209 112 22 chr6 90742673 90742807 -98536747 + LTR18B LTR ERVL 354 499 -115 1729 310 12 46 chr6 90742828 90743157 -98536397 + HERVI LTR ERV1 2751 3090 -4695 2224 67 0 3 chr6 90743157 90743463 -98536091 + AluY SINE Alu 1 305 0 1729 310 12 46 chr6 90743463 90744088 -98535466 + HERVI LTR ERV1 3090 5727 -2058 402 282 8 8 chr6 90744306 90744430 -98535124 + HERVI LTR ERV1 3029 3152 -3744 1441 334 36 47 chr6 90744806 90746042 -98533512 + HERVI LTR ERV1 5290 7647 -138 3990 48 2 4 chr6 90746507 90747006 -98532548 + L1PA5 LINE L1 5649 6146 -8 1882 94 14 4 chr6 90747128 90747404 -98532150 + L1PA13 LINE L1 5866 6144 -19 201 39 0 0 chr6 90747411 90747437 -98532117 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 278 293 82 61 chr6 90747891 90748038 -98531516 - MIR3 SINE MIR -27 181 32 * 2296 290 140 56 chr6 90748024 90749762 -98529792 + L2 LINE L2 1365 3258 -55 7219 54 5 0 chr6 90751040 90752764 -98526790 + L1PA6 LINE L1 4399 6128 -26 285 288 179 0 chr6 90753724 90753923 -98525631 + L1ME2 LINE L1 5452 5682 -439 398 171 24 0 chr6 90753924 90754006 -98525548 - HsTC2 DNA Tc2 0 1898 1815 22 0 0 0 chr6 90754041 90754063 -98525491 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 90754306 90754329 -98525225 + AT_rich Low_complexity Low_complexity 1 23 0 1263 126 12 106 chr6 90754807 90754910 -98524644 - MER30 DNA MER1_type 0 230 119 2236 101 3 3 chr6 90754910 90755207 -98524347 + AluSp SINE Alu 1 297 -16 1263 126 12 106 chr6 90755207 90755357 -98524197 - MER30 DNA MER1_type -111 119 1 25 31 0 0 chr6 90755699 90755731 -98523823 + AT_rich Low_complexity Low_complexity 1 32 0 183 80 0 0 chr6 90755908 90755933 -98523621 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 256 410 25 50 chr6 90755934 90756212 -98523342 - L2 LINE L2 -15 3257 2987 732 201 176 14 chr6 90756379 90756657 -98522897 + MER33 DNA MER1_type 1 323 -1 621 339 128 37 chr6 90756771 90757443 -98522111 - L2 LINE L2 -559 2755 2023 235 261 0 14 chr6 90758603 90758672 -98520882 + C-rich Low_complexity Low_complexity 3 70 0 225 0 0 0 chr6 90759517 90759542 -98520012 + (T)n Simple_repeat Simple_repeat 1 25 0 384 274 189 15 chr6 90760257 90760458 -98519096 - MIR SINE MIR -6 256 21 2321 67 0 3 chr6 90761637 90761955 -98517599 + AluY SINE Alu 1 317 0 969 236 62 30 chr6 90762158 90762455 -98517099 + L1ME2 LINE L1 5773 6086 -78 2123 119 3 3 chr6 90762455 90762749 -98516805 + AluSx SINE Alu 1 294 -18 969 236 62 30 chr6 90762749 90762824 -98516730 + L1ME2 LINE L1 6086 6157 -7 988 272 58 7 chr6 90762829 90763123 -98516431 - MLT1K LTR MaLR -51 537 229 375 236 84 93 chr6 90763696 90763754 -98515800 + LTR50 LTR ERVL 1 58 -737 2093 123 13 17 chr6 90763754 90764054 -98515500 - AluSq SINE Alu -14 299 1 375 236 84 93 chr6 90764054 90764220 -98515334 + LTR50 LTR ERVL 58 223 -572 1020 190 104 26 chr6 90764583 90764890 -98514664 - MER33 DNA MER1_type -6 318 1 278 387 27 0 chr6 90764956 90765067 -98514487 + MIR SINE MIR 30 143 -65 1308 79 0 16 chr6 90765544 90765733 -98513821 + MER107 DNA MER1_type 11 196 -1 336 239 112 37 chr6 90765783 90765876 -98513678 - MIR3 SINE MIR -54 154 47 758 215 77 20 chr6 90765876 90766071 -98513483 - MER63A DNA MER1_type 0 210 5 336 239 112 37 chr6 90766071 90766111 -98513443 - MIR3 SINE MIR -161 47 11 26 64 0 0 chr6 90766376 90766423 -98513131 + AT_rich Low_complexity Low_complexity 1 47 0 1978 89 68 7 chr6 90768185 90768465 -98511089 - AluSg SINE Alu -13 297 1 1858 155 7 17 chr6 90769363 90769654 -98509900 - AluJo SINE Alu -24 288 1 443 309 0 24 chr6 90770076 90770202 -98509352 + L2 LINE L2 3191 3313 0 1423 61 3 27 chr6 90770870 90771120 -98508434 + Tigger3(Golem) DNA MER2_type 12 2918 -111 360 186 105 30 chr6 90771160 90771295 -98508259 + HAL1b LINE L1 805 2333 -174 233 279 70 25 chr6 90771462 90771620 -98507934 + L1ME4a LINE L1 5956 6120 -1 21 0 0 0 chr6 90771666 90771687 -98507867 + AT_rich Low_complexity Low_complexity 1 21 0 5135 125 19 38 chr6 90772959 90773293 -98506261 - MER49 LTR ERV1 -22 886 547 1936 150 3 3 chr6 90773293 90773587 -98505967 + AluSx SINE Alu 1 294 -18 5135 125 19 38 chr6 90773587 90774179 -98505375 - MER49 LTR ERV1 -361 547 1 204 244 0 0 chr6 90774215 90774256 -98505298 + MER5A DNA MER1_type 149 189 0 2381 88 16 3 chr6 90775175 90775483 -98504071 + AluSx SINE Alu 1 312 0 525 274 83 12 chr6 90776165 90776333 -98503221 + MIR SINE MIR 18 197 -65 1684 148 0 0 chr6 90776659 90776895 -98502659 + AluSq SINE Alu 1 236 -77 1565 62 5 5 chr6 90777001 90777193 -98502361 + AluSp SINE Alu 106 297 -16 570 147 64 0 chr6 90777220 90777329 -98502225 - MER30B DNA MER1_type -80 110 15 224 321 172 8 chr6 90777904 90778038 -98501516 - MER5A DNA MER1_type -5 184 29 660 241 21 37 chr6 90778621 90778862 -98500692 - MER34 LTR ERV1 0 542 306 919 87 0 0 chr6 90778876 90778991 -98500563 + AluSq/x SINE Alu 1 115 -197 2268 95 7 7 chr6 90778994 90779290 -98500264 + AluSc SINE Alu 1 296 -13 924 266 23 0 chr6 90779347 90779603 -98499951 - MER34 LTR ERV1 -278 264 3 1675 162 72 45 chr6 90779924 90780257 -98499297 + MER2 DNA MER2_type 2 343 -1 22 35 0 0 chr6 90780344 90780373 -98499181 + AT_rich Low_complexity Low_complexity 1 29 0 1757 171 10 3 chr6 90780745 90781055 -98498499 - AluJb SINE Alu 0 312 1 4574 93 38 15 chr6 90781094 90781407 -98498147 + L1PA16 LINE L1 5454 5758 -408 360 0 0 0 chr6 90781407 90781447 -98498107 + (TA)n Simple_repeat Simple_repeat 2 41 0 4574 93 38 15 chr6 90781447 90781813 -98497741 + L1PA16 LINE L1 5758 6149 -17 1939 94 14 11 chr6 90782388 90782689 -98496865 - AluSc SINE Alu 0 302 1 607 361 97 24 chr6 90783246 90783739 -98495815 - L2 LINE L2 -4 3268 2756 * 636 284 22 6 chr6 90783734 90783917 -98495637 - MIR SINE MIR -59 203 18 378 184 56 32 chr6 90784038 90784163 -98495391 - Charlie8 DNA MER1_type -2224 193 66 545 327 93 73 chr6 90784165 90784770 -98494784 + L1MEd LINE L1 4 620 -5499 884 121 0 0 chr6 90784898 90785022 -98494532 + AluSp/q SINE Alu 174 297 -16 253 127 73 0 chr6 90785022 90785077 -98494477 + L1MEd LINE L1 776 834 -5285 26 0 0 0 chr6 90785115 90785141 -98494413 + AT_rich Low_complexity Low_complexity 1 26 0 692 239 46 17 chr6 90785234 90785473 -98494081 + MER34B LTR ERV1 320 565 0 489 272 67 45 chr6 90785732 90785986 -98493568 + L1ME LINE L1 4910 5175 -996 2140 117 0 13 chr6 90785986 90786284 -98493270 + AluSp SINE Alu 1 294 -19 489 272 67 45 chr6 90786284 90786513 -98493041 + L1ME LINE L1 5175 5398 -773 2225 203 45 18 chr6 90786523 90787138 -98492416 + L1MB8 LINE L1 3841 4472 -1674 1510 175 18 25 chr6 90787163 90787437 -98492117 - AluJb SINE Alu -34 278 7 883 128 0 0 chr6 90787452 90787569 -98491985 - FLAM_C SINE Alu -18 125 9 1337 206 0 51 chr6 90787575 90787930 -98491624 + L1MB8 LINE L1 4461 4797 -1349 1938 153 10 0 chr6 90787930 90788237 -98491317 + AluSx SINE Alu 1 310 -2 462 230 20 7 chr6 90788246 90788394 -98491160 + GA-rich Low_complexity Low_complexity 1 150 0 2614 196 32 14 chr6 90788394 90789373 -98490181 + L1MB8 LINE L1 4783 5778 -400 518 154 29 0 chr6 90789482 90789586 -98489968 + L1MB8 LINE L1 6071 6177 -1 2442 67 7 0 chr6 90789611 90789908 -98489646 + AluSp SINE Alu 1 299 -14 413 317 108 12 chr6 90789909 90790183 -98489371 + L1ME LINE L1 5392 5707 -455 1826 114 4 0 chr6 90790183 90790428 -98489126 - AluSq SINE Alu -14 299 54 413 317 108 12 chr6 90790428 90790497 -98489057 + L1ME LINE L1 5707 5768 -394 2534 132 64 7 chr6 90790721 90791145 -98488409 + MER83 LTR ERV1 1 448 0 1860 137 0 27 chr6 90792005 90792304 -98487250 - AluJb SINE Alu -19 293 3 25 0 0 0 chr6 90792631 90792656 -98486898 + AT_rich Low_complexity Low_complexity 1 25 0 444 317 81 65 chr6 90792930 90793176 -98486378 - L2 LINE L2 0 3272 3023 22 0 0 0 chr6 90793988 90794010 -98485544 + AT_rich Low_complexity Low_complexity 1 22 0 2271 121 0 0 chr6 90794610 90794915 -98484639 - AluSx SINE Alu -7 305 1 180 285 80 73 chr6 90794954 90795105 -98484449 + L2 LINE L2 2262 2413 -901 242 277 50 40 chr6 90795220 90795321 -98484233 + MIR SINE MIR 154 255 -7 237 195 11 115 chr6 90795473 90795560 -98483994 + MLT1G1-int LTR MaLR 1109 1186 -185 753 245 91 51 chr6 90795754 90796125 -98483429 + MLT1G1 LTR MaLR 16 352 -203 26 30 0 0 chr6 90796803 90796836 -98482718 + AT_rich Low_complexity Low_complexity 1 33 0 1954 113 193 14 chr6 90798411 90798473 -98481081 - MSTA LTR MaLR 0 428 378 2321 96 0 3 chr6 90798473 90798775 -98480779 + AluSx SINE Alu 1 301 -11 1954 113 193 14 chr6 90798775 90799075 -98480479 - MSTA LTR MaLR -50 378 1 239 268 89 54 chr6 90800982 90801094 -98478460 + MIR SINE MIR 17 132 -76 316 336 119 7 chr6 90801751 90801894 -98477660 + MIR3 SINE MIR 49 207 -1 303 277 106 14 chr6 90801983 90802124 -98477430 + MIR SINE MIR 106 259 -3 2265 91 0 16 chr6 90802215 90802522 -98477032 - AluSx SINE Alu -10 302 1 530 319 117 5 chr6 90802564 90802777 -98476777 + MIR SINE MIR 25 261 -1 1917 140 7 16 chr6 90802829 90803136 -98476418 + AluSg SINE Alu 2 305 -5 2122 98 20 7 chr6 90804421 90804718 -98474836 - AluSq SINE Alu -12 301 1 273 169 92 0 chr6 90805443 90805508 -98474046 + MLT1A2 LTR MaLR 4 74 -300 415 313 68 0 chr6 90806334 90806481 -98473073 + MIR SINE MIR 106 262 0 2122 98 57 3 chr6 90806632 90806929 -98472625 - AluSp SINE Alu 0 313 1 461 305 97 18 chr6 90807236 90807462 -98472092 - MIR SINE MIR 0 262 19 2255 113 10 0 chr6 90807719 90808028 -98471526 + AluSp SINE Alu 1 312 -1 444 283 77 36 chr6 90808063 90808996 -98470558 - L1MC4 LINE L1 -89 7953 7030 472 182 208 6 chr6 90809079 90809238 -98470316 - L1MC4 LINE L1 -980 7062 6872 2017 89 0 0 chr6 90809239 90809496 -98470058 + AluSg SINE Alu 1 257 -53 1702 131 16 0 chr6 90809496 90809746 -98469808 + AluSx SINE Alu 45 300 -12 355 235 138 61 chr6 90809921 90810232 -98469322 - L1MC4a LINE L1 -1673 6135 5801 269 321 8 15 chr6 90811451 90811582 -98467972 + GA-rich Low_complexity Low_complexity 5 134 0 844 118 0 44 chr6 90811741 90811877 -98467677 - FLAM_C SINE Alu -3 130 1 517 304 7 0 chr6 90811891 90812039 -98467515 - MIR SINE MIR -2 260 112 1591 189 41 67 chr6 90812042 90812520 -98467034 + MLT1A1 LTR MaLR 1 365 0 183 204 0 82 chr6 90812520 90812569 -98466985 - MIR SINE MIR -151 111 67 817 240 81 78 chr6 90812628 90813061 -98466493 + MLT1L LTR MaLR 121 554 -61 248 366 0 0 chr6 90813546 90813617 -98465937 + L2 LINE L2 3184 3254 -18 24 32 0 0 chr6 90813720 90813751 -98465803 + AT_rich Low_complexity Low_complexity 1 31 0 2078 140 14 0 chr6 90813956 90814249 -98465305 + AluSx SINE Alu 2 298 -14 227 81 40 68 chr6 90815175 90815249 -98464305 + (TA)n Simple_repeat Simple_repeat 2 73 0 26 50 0 0 chr6 90815274 90815314 -98464240 + AT_rich Low_complexity Low_complexity 1 40 0 182 88 0 29 chr6 90815347 90815381 -98464173 + (TAAAAA)n Simple_repeat Simple_repeat 1 33 0 400 277 43 11 chr6 90815432 90815526 -98464028 + L2 LINE L2 3177 3273 -40 1627 161 17 34 chr6 90815825 90816116 -98463438 + AluJb SINE Alu 5 290 -22 302 222 0 0 chr6 90816117 90816180 -98463374 - L1MC4 LINE L1 -1339 6703 6641 422 256 199 19 chr6 90816617 90816773 -98462781 - MIR SINE MIR 0 262 79 836 159 0 0 chr6 90817067 90817199 -98462355 + FLAM_C SINE Alu 1 132 -1 278 317 44 44 chr6 90817292 90817475 -98462079 + L2 LINE L2 1721 1903 -1411 185 355 0 0 chr6 90817492 90817554 -98462000 - MIR SINE MIR 0 262 201 256 265 0 15 chr6 90818413 90818481 -98461073 - MIR SINE MIR -107 155 89 318 325 84 21 chr6 90818489 90818726 -98460828 + L2 LINE L2 1931 2182 -1132 1679 191 54 56 chr6 90818825 90819307 -98460247 + Charlie4a DNA MER1_type 27 507 -1 673 184 246 0 chr6 90819900 90820079 -98459475 - MER58A DNA MER1_type 0 224 2 317 207 155 26 chr6 90823141 90823257 -98456297 + L1ME LINE L1 5513 5643 -478 25 31 0 0 chr6 90823798 90823830 -98455724 + AT_rich Low_complexity Low_complexity 1 32 0 27 49 0 0 chr6 90823853 90823894 -98455660 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr6 90823929 90823954 -98455600 + AT_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chr6 90824041 90824078 -98455476 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr6 90825002 90825036 -98454518 + AT_rich Low_complexity Low_complexity 1 34 0 940 121 0 34 chr6 90825191 90825340 -98454214 + AluJo SINE Alu 1 144 -168 1120 175 25 113 chr6 90825342 90825668 -98453886 + L1MC4 LINE L1 6741 7037 -1005 231 259 47 12 chr6 90825696 90825781 -98453773 - L1MC4 LINE L1 -684 7358 7271 755 153 0 32 chr6 90825792 90825916 -98453638 + FLAM_C SINE Alu 3 122 -21 1643 233 80 42 chr6 90825950 90826576 -98452978 + L1MC4 LINE L1 7392 8041 -1 296 127 18 0 chr6 90826604 90826659 -98452895 + GA-rich Low_complexity Low_complexity 3 58 0 898 201 7 0 chr6 90827004 90827158 -98452396 + FAM SINE Alu 1 155 -30 367 208 28 9 chr6 90827365 90827471 -98452083 - Charlie5 DNA MER1_type -28 2584 2477 2537 80 3 0 chr6 90827476 90827788 -98451766 - AluSp SINE Alu 0 313 1 45 75 0 0 chr6 90827800 90827894 -98451660 + AT_rich Low_complexity Low_complexity 1 94 0 215 214 24 0 chr6 90828819 90828861 -98450693 + (CA)n Simple_repeat Simple_repeat 2 44 0 202 281 47 0 chr6 90828864 90828928 -98450626 + MIR SINE MIR 120 186 -76 21 36 0 0 chr6 90828939 90828967 -98450587 + AT_rich Low_complexity Low_complexity 1 28 0 1334 97 38 80 chr6 90829308 90829546 -98450008 + MER30 DNA MER1_type 3 230 0 2149 62 0 72 chr6 90829556 90829885 -98449669 - AluY SINE Alu 0 307 1 992 83 0 8 chr6 90829887 90830020 -98449534 - AluSg SINE Alu -178 132 1 373 277 68 14 chr6 90830322 90830470 -98449084 + MLT1H LTR MaLR 392 547 -2 341 277 72 0 chr6 90831090 90831173 -98448381 - MIR SINE MIR -154 108 20 23 78 0 0 chr6 90831232 90831283 -98448271 + AT_rich Low_complexity Low_complexity 1 51 0 33 0 0 0 chr6 90831944 90831977 -98447577 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr6 90832035 90832063 -98447491 + AT_rich Low_complexity Low_complexity 1 28 0 375 278 38 0 chr6 90832210 90832343 -98447211 - MER20B DNA MER1_type -616 167 30 1314 141 92 0 chr6 90833329 90833535 -98446019 + AluJo SINE Alu 88 312 0 284 243 53 103 chr6 90833875 90834118 -98445436 + L1ME3A LINE L1 4616 4846 -1300 1423 256 66 29 chr6 90834334 90835134 -98444420 + L1ME3A LINE L1 5123 5948 -222 3768 119 158 57 chr6 90835527 90836347 -98443207 - MER4D LTR ERV1 0 903 1 198 103 0 0 chr6 90838020 90838049 -98441505 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 877 120 0 0 chr6 90838089 90838222 -98441332 - L1MA9 LINE L1 0 6312 6180 1344 163 19 0 chr6 90838516 90838773 -98440781 - L1MD3 LINE L1 -5 7990 7729 293 271 64 37 chr6 90838918 90839051 -98440503 - L1ME LINE L1 -590 5572 5429 2349 72 0 0 chr6 90839051 90839373 -98440181 - AluY SINE Alu 0 322 1 293 271 64 37 chr6 90839373 90839425 -98440129 - L1ME LINE L1 -733 5429 5380 846 273 93 51 chr6 90839433 90840555 -98438999 - L1ME LINE L1 -828 5318 4150 925 212 133 70 chr6 90840615 90841143 -98438411 - MER34B LTR ERV1 0 565 5 574 264 111 115 chr6 90841148 90841181 -98438373 - MLT1H1 LTR MaLR 0 530 498 934 105 0 0 chr6 90841181 90841324 -98438230 + L1MB3 LINE L1 6033 6175 -8 574 264 111 115 chr6 90841324 90841761 -98437793 - MLT1H1 LTR MaLR -32 498 1 482 174 0 0 chr6 90841802 90841888 -98437666 - L1MA8 LINE L1 -199 6092 6007 21 0 0 0 chr6 90842047 90842068 -98437486 + AT_rich Low_complexity Low_complexity 1 21 0 310 243 87 0 chr6 90842127 90842230 -98437324 - MER94 DNA DNA -21 113 2 27 0 0 0 chr6 90842380 90842407 -98437147 + AT_rich Low_complexity Low_complexity 1 27 0 239 336 0 15 chr6 90842956 90843087 -98436467 - L1MDa LINE L1 -4564 1976 1848 424 245 13 13 chr6 90843230 90843246 -98436308 - L1MA10 LINE L1 -2 6332 6317 1094 229 48 6 chr6 90843246 90843560 -98435994 - L1ME2 LINE L1 -9 6155 5829 1007 211 63 74 chr6 90843561 90843731 -98435823 - L1ME2 LINE L1 -1094 5052 4882 180 0 0 0 chr6 90843731 90843751 -98435803 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1007 211 63 74 chr6 90843751 90843945 -98435609 - L1ME2 LINE L1 -1264 4882 4692 28978 97 9 9 chr6 90844265 90848688 -98430866 + L1P LINE L1 13 4434 -1712 350 310 78 0 chr6 90850332 90850448 -98429106 + MIR SINE MIR 27 151 -57 277 333 73 16 chr6 90851749 90851872 -98427682 - L2 LINE L2 0 3272 3143 416 262 27 82 chr6 90852394 90852577 -98426977 - MIR3 SINE MIR -19 189 17 275 305 55 78 chr6 90852585 90852713 -98426841 - L2 LINE L2 0 3272 3148 277 284 116 45 chr6 90853248 90853403 -98426151 - MIR SINE MIR -66 196 31 2351 169 42 15 chr6 90853697 90854152 -98425402 - MLT1C LTR MaLR 0 467 1 2169 120 10 7 chr6 90854566 90854865 -98424689 + AluSq SINE Alu 1 300 -13 933 152 73 5 chr6 90855145 90856067 -98423487 - L1MA5A LINE L1 -3 6294 5181 1932 157 0 3 chr6 90856463 90856756 -98422798 + AluJb SINE Alu 2 293 -19 195 42 0 0 chr6 90858147 90858171 -98421383 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 414 0 0 0 chr6 90858306 90858352 -98421202 + (TG)n Simple_repeat Simple_repeat 1 46 0 404 304 65 34 chr6 90858652 90858858 -98420696 + MIR SINE MIR 38 252 -10 1621 168 17 0 chr6 90859252 90859550 -98420004 - MER2 DNA MER2_type 0 345 43 544 250 57 6 chr6 90859616 90859792 -98419762 + MER117 DNA MER1_type 13 197 0 462 331 44 7 chr6 90860264 90860448 -98419106 - MIR SINE MIR -63 145 4 202 331 81 29 chr6 90860749 90860921 -98418633 - MIR SINE MIR -31 231 51 268 322 34 42 chr6 90861739 90861857 -98417697 + MIR3 SINE MIR 8 124 -84 2162 89 27 10 chr6 90862033 90862326 -98417228 + AluSx SINE Alu 1 298 -14 398 265 94 49 chr6 90862613 90862858 -98416696 + Charlie8 DNA MER1_type 198 453 -1964 1147 200 9 0 chr6 90863145 90863360 -98416194 - MER20 DNA MER1_type 0 219 3 234 323 151 0 chr6 90863414 90863507 -98416047 - MIR3 SINE MIR -21 187 81 376 206 0 168 chr6 90863541 90863672 -98415882 + MIR SINE MIR 21 130 -78 3784 171 30 12 chr6 90863698 90864454 -98415100 - L1MB7 LINE L1 -19 6165 5396 468 60 40 20 chr6 90865411 90865511 -98414043 + (TA)n Simple_repeat Simple_repeat 2 103 0 27 0 0 0 chr6 90866562 90866589 -98412965 + AT_rich Low_complexity Low_complexity 1 27 0 275 375 40 20 chr6 90866908 90867060 -98412494 + L2 LINE L2 3104 3258 -14 288 0 0 0 chr6 90867141 90867173 -98412381 + (CA)n Simple_repeat Simple_repeat 1 32 0 1891 147 107 32 chr6 90867560 90867962 -98411592 - MSTB1 LTR MaLR 0 432 1 310 184 39 19 chr6 90868021 90868124 -98411430 + (TAAA)n Simple_repeat Simple_repeat 2 106 0 1271 141 9 44 chr6 90869016 90869243 -98410311 - MER20 DNA MER1_type 0 219 1 821 195 191 22 chr6 90869384 90869661 -98409893 + MER5C DNA MER1_type 1 324 0 205 228 0 53 chr6 90869755 90869812 -98409742 + L2 LINE L2 3219 3272 0 360 266 37 9 chr6 90871132 90871241 -98408313 - MLT1H LTR MaLR -424 125 14 230 280 54 21 chr6 90872296 90872389 -98407165 - L2 LINE L2 -218 3054 2959 209 195 0 0 chr6 90872524 90872565 -98406989 + MER5A DNA MER1_type 34 74 -115 1572 178 49 26 chr6 90872573 90872961 -98406593 - L1MB8 LINE L1 0 6178 5782 533 209 8 39 chr6 90872961 90873090 -98406464 + MER5A DNA MER1_type 63 187 -2 587 326 115 22 chr6 90873095 90873512 -98406042 - L2 LINE L2 -456 2858 2403 1464 186 73 21 chr6 90873687 90874014 -98405540 - MER2 DNA MER2_type 0 344 1 1403 64 0 12 chr6 90874768 90874941 -98404613 - AluSq SINE Alu -11 302 132 22 0 0 0 chr6 90874941 90874963 -98404591 + AT_rich Low_complexity Low_complexity 1 22 0 35836 87 7 8 chr6 90875301 90881454 -98398100 - L1PA6 LINE L1 0 6154 11 515 311 31 0 chr6 90881477 90881638 -98397916 - MIR SINE MIR -16 246 81 369 206 114 87 chr6 90881820 90882004 -98397550 - Charlie7 DNA MER1_type -490 2122 1934 351 141 0 84 chr6 90882026 90882077 -98397477 - Charlie7 DNA MER1_type -909 1703 1658 2275 103 0 0 chr6 90882077 90882377 -98397177 + AluSg SINE Alu 3 302 -8 351 141 0 84 chr6 90882377 90882396 -98397158 - Charlie7 DNA MER1_type -954 1658 1639 21 0 0 0 chr6 90882649 90882670 -98396884 + AT_rich Low_complexity Low_complexity 1 21 0 197 246 53 35 chr6 90882808 90882865 -98396689 - L2 LINE L2 0 3272 3215 229 227 93 21 chr6 90883224 90883321 -98396233 - MLT1J LTR MaLR -1 510 407 318 380 48 24 chr6 90884170 90884217 -98395337 - MIR SINE MIR -70 192 148 2024 183 12 27 chr6 90884217 90884603 -98394951 - MER57A LTR ERV1 0 403 22 2314 100 0 7 chr6 90884603 90884902 -98394652 - AluSx SINE Alu -15 297 1 2024 183 12 27 chr6 90884902 90884924 -98394630 - MER57A LTR ERV1 -381 22 1 318 380 48 24 chr6 90884924 90885042 -98394512 - MIR SINE MIR -114 148 23 204 263 30 101 chr6 90886262 90886361 -98393193 - L2 LINE L2 -2 3311 3220 30 0 0 0 chr6 90886365 90886395 -98393159 + AT_rich Low_complexity Low_complexity 1 30 0 270 309 52 10 chr6 90886412 90886509 -98393045 - L2 LINE L2 -252 3061 2961 442 283 31 67 chr6 90886565 90886605 -98392949 - L2 LINE L2 -78 3235 3195 2166 112 34 0 chr6 90886605 90886900 -98392654 - AluSq SINE Alu -8 305 1 442 283 31 67 chr6 90886900 90887082 -98392472 - L2 LINE L2 -118 3195 3021 1583 218 6 6 chr6 90887110 90887449 -98392105 - MER58B DNA MER1_type 0 341 3 385 297 39 22 chr6 90887533 90887752 -98391802 - HsTC2 DNA Tc2 -1445 453 231 292 293 55 82 chr6 90887752 90888131 -98391423 - MLT1J LTR MaLR -2 509 141 1923 98 68 0 chr6 90888340 90888624 -98390930 + AluSp SINE Alu 1 302 0 442 298 94 65 chr6 90889410 90889719 -98389835 - L1MC4a LINE L1 -1695 6113 5796 586 170 0 10 chr6 90889771 90889871 -98389683 + Tigger7 DNA MER2_type 2389 2487 0 907 100 0 0 chr6 90890448 90890568 -98388986 + FLAM_C SINE Alu 1 120 -13 260 53 26 0 chr6 90891240 90891278 -98388276 + (TATG)n Simple_repeat Simple_repeat 4 42 0 36 53 0 0 chr6 90891293 90891350 -98388204 + AT_rich Low_complexity Low_complexity 1 57 0 317 345 35 0 chr6 90891937 90892050 -98387504 + MIR SINE MIR 34 150 -112 22 35 0 0 chr6 90892124 90892153 -98387401 + AT_rich Low_complexity Low_complexity 1 29 0 1095 278 150 40 chr6 90892361 90893598 -98385956 - HAL1 LINE L1 -863 1644 272 330 26 0 0 chr6 90893757 90893796 -98385758 + (TG)n Simple_repeat Simple_repeat 2 40 0 29 37 0 19 chr6 90895263 90895292 -98384262 + AT_rich Low_complexity Low_complexity 1 30 -23 2832 143 36 0 chr6 90895292 90895794 -98383760 - L1MB2 LINE L1 0 6171 5652 29 37 0 19 chr6 90895794 90895818 -98383736 + AT_rich Low_complexity Low_complexity 30 53 0 5017 112 69 18 chr6 90895818 90896736 -98382818 - L1PA16 LINE L1 -15 6151 5175 4314 209 23 14 chr6 90896738 90898107 -98381447 - L1MB2 LINE L1 -522 5649 4266 1035 87 0 0 chr6 90898983 90899121 -98380433 + AluSg/x SINE Alu 157 294 -16 203 0 0 36 chr6 90899156 90899184 -98380370 + (CA)n Simple_repeat Simple_repeat 2 28 0 269 160 0 20 chr6 90899451 90899524 -98380030 - Alu SINE Alu 0 305 234 3788 48 17 4 chr6 90899887 90900364 -98379190 + L1PA6 LINE L1 5668 6150 -4 330 147 13 160 chr6 90900494 90900616 -98378938 - MER58C DNA MER1_type -2234 186 88 2109 98 35 3 chr6 90900616 90900902 -98378652 - AluSc SINE Alu -14 295 1 330 147 13 160 chr6 90900902 90900929 -98378625 - MER58C DNA MER1_type -2332 88 59 28 61 0 0 chr6 90902809 90902858 -98376696 + AT_rich Low_complexity Low_complexity 1 49 0 1020 270 91 95 chr6 90903160 90903918 -98375636 - HAL1 LINE L1 -884 1623 869 24 53 0 0 chr6 90905938 90905976 -98373578 + AT_rich Low_complexity Low_complexity 1 38 0 416 170 0 85 chr6 90906712 90906806 -98372748 - FRAM SINE Alu -17 159 74 1410 201 0 40 chr6 90907133 90907437 -98372117 - AluJo SINE Alu -10 302 11 843 158 0 0 chr6 90907925 90908045 -98371509 + AluJ SINE Alu 1 120 -192 1113 169 11 0 chr6 90908141 90908324 -98371230 + AluJ SINE Alu 113 297 -15 276 295 18 54 chr6 90908355 90908467 -98371087 - L2 LINE L2 -494 2820 2713 192 0 75 50 chr6 90908469 90908509 -98371045 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 13755 33 0 0 chr6 90908513 90910917 -98368637 - L1PA4 LINE L1 -3 6152 3749 550 339 116 25 chr6 90911740 90912353 -98367201 + L2 LINE L2 2286 3047 -225 222 306 149 8 chr6 90912394 90912515 -98367039 - L2 LINE L2 -256 3057 2920 181 339 18 0 chr6 90912736 90912792 -98366762 + MIR SINE MIR 49 105 -157 181 362 0 0 chr6 90912806 90912875 -98366679 + MIR SINE MIR 154 222 -40 325 234 117 0 chr6 90914369 90914506 -98365048 - L1ME4a LINE L1 0 6121 5969 270 0 0 0 chr6 90916619 90916649 -98362905 + (T)n Simple_repeat Simple_repeat 1 30 0 24 53 0 0 chr6 90917490 90917528 -98362026 + AT_rich Low_complexity Low_complexity 1 38 0 658 313 80 10 chr6 90920857 90921372 -98358182 - L1ME4a LINE L1 -352 5818 5268 23 54 0 0 chr6 90921647 90921684 -98357870 + AT_rich Low_complexity Low_complexity 1 37 0 1334 166 88 0 chr6 90922280 90922576 -98356978 + MER33 DNA MER1_type 3 324 0 858 268 42 21 chr6 90922976 90923308 -98356246 - L1MA9 LINE L1 -38 6274 5936 263 103 138 0 chr6 90923314 90923372 -98356182 - L1MA9 LINE L1 -430 5861 5796 1697 206 0 10 chr6 90923705 90924015 -98355539 + AluJo SINE Alu 1 307 -5 2314 118 0 0 chr6 90924051 90924355 -98355199 + AluSx SINE Alu 1 304 -8 1943 135 9 50 chr6 90924437 90924756 -98354798 - AluSx SINE Alu -6 306 1 1843 119 104 17 chr6 90926533 90926878 -98352676 - THE1C LTR MaLR 0 375 1 285 248 18 44 chr6 90927126 90927239 -98352315 - LTR41 LTR ERVL -6 767 658 560 256 11 42 chr6 90927597 90927788 -98351766 - LTR41 LTR ERVL -588 185 1 21 0 0 0 chr6 90929234 90929255 -98350299 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr6 90929693 90929719 -98349835 + (TG)n Simple_repeat Simple_repeat 1 26 0 1808 139 14 4 chr6 90929795 90930075 -98349479 + AluJb SINE Alu 4 286 -26 26 0 0 0 chr6 90930915 90930941 -98348613 + AT_rich Low_complexity Low_complexity 1 26 0 898 183 24 20 chr6 90931771 90932160 -98347394 - MLT1D LTR MaLR -32 473 22 304 243 146 10 chr6 90933238 90933341 -98346213 - L2 LINE L2 -9 3263 3147 293 166 371 0 chr6 90933762 90933889 -98345665 + MER5A DNA MER1_type 6 188 -1 193 368 39 54 chr6 90933895 90934099 -98345455 - L2 LINE L2 -553 2761 2561 180 219 0 0 chr6 90935132 90935164 -98344390 - L2 LINE L2 -17 3255 3224 293 247 13 0 chr6 90935164 90935241 -98344313 + MER112 DNA MER1_type 2 79 -181 613 250 104 31 chr6 90935648 90936015 -98343539 + MLT1H LTR MaLR 80 579 -16 393 198 30 20 chr6 90936155 90936256 -98343298 - MLT1J LTR MaLR -5 506 405 2777 246 82 11 chr6 90936620 90937445 -98342109 + MER69 DNA AcHobo 33 916 -1610 1268 187 100 54 chr6 90937464 90937924 -98341630 + MER69 DNA AcHobo 1975 2455 -71 24 0 0 0 chr6 90939912 90939936 -98339618 + AT_rich Low_complexity Low_complexity 1 24 0 831 170 14 14 chr6 90940037 90940200 -98339354 + FRAM SINE Alu 9 171 0 1944 174 11 25 chr6 90940691 90941058 -98338496 - MLT1A1 LTR MaLR -3 362 1 2058 110 0 49 chr6 90942599 90942907 -98336647 + AluSx SINE Alu 1 293 -19 1319 159 35 0 chr6 90943088 90943314 -98336240 + MER46A DNA MER2_type 1 234 -2 1251 266 28 0 chr6 90943367 90943694 -98335860 - MER58B DNA MER1_type -5 336 1 1138 159 5 24 chr6 90944304 90944411 -98335143 + MER3 DNA MER1_type 6 109 -100 1148 187 40 4 chr6 90944411 90944636 -98334918 - MER46A DNA MER2_type -3 233 1 1138 159 5 24 chr6 90944636 90944736 -98334818 + MER3 DNA MER1_type 109 209 0 1987 97 3 117 chr6 90944944 90945295 -98334259 - AluSq SINE Alu -2 311 1 604 301 104 29 chr6 90946310 90947133 -98332421 + L1MEd LINE L1 605 1590 -900 317 246 0 0 chr6 90947351 90947416 -98332138 + L2 LINE L2 3249 3313 0 519 169 130 63 chr6 90948076 90948283 -98331271 - ORSL DNA AcHobo -1 274 54 793 281 18 18 chr6 90948558 90948775 -98330779 - MIR SINE MIR -15 247 31 2594 185 56 11 chr6 90949606 90950140 -98329414 + MER74A LTR ERVL 1 558 0 1545 205 16 29 chr6 90950209 90950584 -98328970 - MLT1A2 LTR MaLR -4 370 1 358 169 31 0 chr6 90951254 90951319 -98328235 + MIR SINE MIR 115 181 -81 369 0 0 0 chr6 90951324 90951335 -98328219 + (TG)n Simple_repeat Simple_repeat 1 52 0 369 0 0 0 chr6 90951335 90951376 -98328178 + (TG)n Simple_repeat Simple_repeat 2 42 0 357 254 0 68 chr6 90951444 90951562 -98327992 - MIR SINE MIR -91 171 62 2178 114 0 10 chr6 90951804 90952112 -98327442 + AluSx SINE Alu 1 305 -7 251 297 93 8 chr6 90952530 90952648 -98326906 + L2 LINE L2 2874 3001 -271 2339 51 41 7 chr6 90955056 90955350 -98324204 + AluY SINE Alu 1 304 -7 1158 141 159 66 chr6 90955478 90955811 -98323743 - MLT1A1 LTR MaLR -1 364 1 272 292 94 70 chr6 90955892 90956063 -98323491 - L2 LINE L2 -1 3271 3097 265 347 25 55 chr6 90956545 90956744 -98322810 + MIR SINE MIR 25 221 -41 202 319 64 11 chr6 90956960 90957054 -98322500 - MER91B DNA MER1_type -80 110 12 377 66 82 0 chr6 90957162 90957223 -98322331 + MER41B LTR ERV1 481 546 -89 594 271 68 10 chr6 90957300 90957492 -98322062 + MIR SINE MIR 59 261 -1 247 307 29 29 chr6 90957492 90957632 -98321922 + HAL1 LINE L1 1472 1611 -896 7033 57 2 2 chr6 90957633 90958608 -98320946 + L1PA7 LINE L1 5176 6150 -4 24 0 0 0 chr6 90959045 90959069 -98320485 + AT_rich Low_complexity Low_complexity 1 24 0 33 25 0 0 chr6 90959588 90959628 -98319926 + AT_rich Low_complexity Low_complexity 1 40 0 4867 156 63 4 chr6 90959628 90960748 -98318806 - L1MA4 LINE L1 -6 6294 5111 1411 76 0 0 chr6 90960745 90960943 -98318611 - L1PA15 LINE L1 -186 5979 5782 * 307 334 28 0 chr6 90960944 90961076 -98318478 - MIR SINE MIR -30 178 41 466 308 23 60 chr6 90961597 90961944 -98317610 + L1MDa LINE L1 1 334 -6206 701 190 6 19 chr6 90961965 90962123 -98317431 + MLT1A1 LTR MaLR 1 156 -209 731 203 16 0 chr6 90962123 90962251 -98317303 + FLAM_A SINE Alu 1 130 -12 762 226 37 32 chr6 90962251 90962468 -98317086 + MLT1A1 LTR MaLR 148 365 0 1059 98 11 54 chr6 90962476 90962660 -98316894 - THE1B LTR MaLR 0 364 189 1620 149 9 0 chr6 90962669 90963098 -98316456 - L1P4 LINE L1 -702 6901 6470 2416 98 7 0 chr6 90963154 90963461 -98316093 - AluSg SINE Alu -1 309 1 1370 47 0 0 chr6 90963466 90963635 -98315919 - L1PA8 LINE L1 0 6172 6004 6112 205 25 8 chr6 90963635 90965091 -98314463 - L1P4 LINE L1 -1899 5685 4205 1158 241 24 12 chr6 90965089 90965425 -98314129 - L1P4 LINE L1 -7241 340 1 * 460 198 24 40 chr6 90965439 90965565 -98313989 + L1ME1 LINE L1 5587 5710 -532 868 199 13 0 chr6 90965629 90965785 -98313769 - AluJb SINE Alu -18 294 137 1141 191 14 118 chr6 90965785 90966131 -98313423 - MLT1A1 LTR MaLR -55 310 1 689 232 18 0 chr6 90966131 90966299 -98313255 + L1ME1 LINE L1 5702 5872 -294 806 194 14 0 chr6 90966338 90966482 -98313072 + MER58B DNA MER1_type 195 340 -1 654 213 104 41 chr6 90966483 90966704 -98312850 + L1ME1 LINE L1 5867 6101 -65 261 244 49 0 chr6 90969042 90969124 -98310430 - MER97b DNA MER1_type? 0 1053 968 22 56 0 0 chr6 90969269 90969305 -98310249 + AT_rich Low_complexity Low_complexity 1 36 0 398 183 52 26 chr6 90969614 90969729 -98309825 - MER97c DNA MER1_type? -206 884 767 21 0 0 0 chr6 90969842 90969863 -98309691 + AT_rich Low_complexity Low_complexity 1 21 0 2473 214 109 11 chr6 90971575 90972319 -98307235 - MER97b DNA MER1_type? -236 817 1 447 35 0 0 chr6 90973137 90973194 -98306360 + (TG)n Simple_repeat Simple_repeat 1 57 0 517 252 0 0 chr6 90973200 90973311 -98306243 - FLAM_C SINE Alu -32 111 1 22 0 0 0 chr6 90973621 90973643 -98305911 + AT_rich Low_complexity Low_complexity 1 22 0 3080 115 27 2 chr6 90974056 90974542 -98305012 - L1PA16 LINE L1 -3 6163 5666 220 111 37 0 chr6 90975015 90975069 -98304485 + (TAA)n Simple_repeat Simple_repeat 2 57 0 189 268 54 0 chr6 90975109 90975165 -98304389 - MIR SINE MIR -68 194 136 295 243 48 87 chr6 90975623 90975726 -98303828 + L2 LINE L2 3159 3257 -15 180 111 0 0 chr6 90975728 90975755 -98303799 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 222 324 22 72 chr6 90975766 90975905 -98303649 - MIR3 SINE MIR -63 145 14 204 118 29 0 chr6 90976695 90976729 -98302825 + (CA)n Simple_repeat Simple_repeat 1 35 0 2252 142 45 45 chr6 90976972 90977361 -98302193 - MER65A LTR ERV1 0 445 54 2254 85 0 23 chr6 90977361 90977666 -98301888 - AluY SINE Alu -13 298 1 2252 142 45 45 chr6 90977666 90977721 -98301833 - MER65A LTR ERV1 -390 55 1 389 118 13 26 chr6 90977722 90977798 -98301756 + L1MB2 LINE L1 6088 6162 -9 1862 172 0 7 chr6 90977798 90978100 -98301454 - AluJo SINE Alu -12 300 1 250 194 111 65 chr6 90978126 90978234 -98301320 - L1ME LINE L1 -310 5811 5699 22 0 0 0 chr6 90978316 90978338 -98301216 + AT_rich Low_complexity Low_complexity 1 22 0 2278 113 7 0 chr6 90978649 90978959 -98300595 + AluSx SINE Alu 1 312 0 34 0 0 0 chr6 90979103 90979137 -98300417 + AT_rich Low_complexity Low_complexity 1 34 0 246 62 0 0 chr6 90979421 90979453 -98300101 + (TC)n Simple_repeat Simple_repeat 2 33 0 930 244 89 54 chr6 90982040 90982718 -98296836 + MER52A LTR ERV1 574 1459 -296 522 235 101 7 chr6 90982906 90983055 -98296499 + MER63A DNA MER1_type 48 210 0 2685 228 52 13 chr6 90983292 90984061 -98295493 + L1MB5 LINE L1 4016 4814 -1332 255 30 0 0 chr6 90984065 90984098 -98295456 - THE1B LTR MaLR -331 33 1 4274 177 44 28 chr6 90984286 90984342 -98295212 + L1MB5 LINE L1 4825 4879 -1295 2348 114 8 45 chr6 90984342 90984501 -98295053 + THE1B LTR MaLR 1 164 -200 2215 113 7 0 chr6 90984501 90984793 -98294761 - AluSx SINE Alu -18 294 1 2348 114 8 45 chr6 90984793 90985011 -98294543 + THE1B LTR MaLR 164 364 0 4274 177 44 28 chr6 90985011 90985927 -98293627 + L1MB5 LINE L1 4879 5819 -355 2392 93 45 20 chr6 90985927 90986282 -98293272 - THE1B LTR MaLR 0 364 1 4274 177 44 28 chr6 90986282 90986644 -98292910 + L1MB5 LINE L1 5819 6174 0 429 107 27 13 chr6 90986876 90986951 -98292603 + MER65A LTR ERV1 370 445 0 2671 23 3 0 chr6 90987023 90987326 -98292228 + AluY SINE Alu 1 304 -7 251 338 169 7 chr6 90987398 90987534 -98292020 + L3 LINE CR1 1331 1488 -89 841 177 112 57 chr6 90987952 90988284 -98291270 - MER39 LTR ERV1 -140 567 1 211 255 61 61 chr6 90988606 90988704 -98290850 + MIR3 SINE MIR 110 207 -1 2458 225 100 12 chr6 90988966 90989645 -98289909 - MER21B LTR ERV1 -124 739 1 271 264 152 56 chr6 90990068 90990193 -98289361 - L2 LINE L2 -8 3305 3169 369 323 47 57 chr6 90990207 90990399 -98289155 + MIR SINE MIR 29 218 -44 877 279 43 28 chr6 90990430 90990752 -98288802 + MLT2C1 LTR ERVL 17 343 -54 1708 204 0 7 chr6 90991095 90991399 -98288155 + AluJo SINE Alu 7 308 -4 2013 152 37 8 chr6 90991413 90991768 -98287786 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr6 90991885 90991908 -98287646 + AT_rich Low_complexity Low_complexity 1 23 0 287 218 26 13 chr6 90991925 90992003 -98287551 + Charlie8 DNA MER1_type 95 173 -2244 192 266 101 37 chr6 90992143 90992252 -98287302 + L2 LINE L2 700 815 -2499 433 338 79 25 chr6 90992779 90993249 -98286305 + L2 LINE L2 1599 2093 -1221 972 309 82 48 chr6 90993602 90994443 -98285111 + L2 LINE L2 2107 2976 -338 1248 166 0 9 chr6 90994691 90994920 -98284634 + L1MB3 LINE L1 5950 6176 -7 684 283 72 89 chr6 90996216 90996633 -98282921 - L2 LINE L2 0 3313 2904 227 298 91 33 chr6 90997760 90997881 -98281673 - L2 LINE L2 -18 3295 3168 2152 203 22 38 chr6 90997902 90998450 -98281104 - LTR55 LTR ERV -8 540 2 418 289 187 35 chr6 90998451 90999011 -98280543 - L2 LINE L2 -178 3135 2441 2197 175 38 17 chr6 90999050 90999467 -98280087 + MSTB LTR MaLR 1 426 0 536 277 127 9 chr6 90999544 90999757 -98279797 + MIR SINE MIR 14 251 -11 349 245 58 50 chr6 90999901 91000040 -98279514 - MER45A DNA AcHobo 0 178 39 501 144 0 0 chr6 91000806 91000896 -98278658 + (TC)n Simple_repeat Simple_repeat 2 91 0 219 217 0 0 chr6 91000885 91000945 -98278609 + CT-rich Low_complexity Low_complexity 4 63 0 * 1015 226 5 5 chr6 91001012 91001224 -98278330 + MER20 DNA MER1_type 8 219 0 246 299 60 30 chr6 91002327 91002528 -98277026 - L1MC/D LINE L1 -776 5392 5424 557 113 0 0 chr6 91002528 91002608 -98276946 + MADE1 DNA Mariner 1 80 0 246 299 60 30 chr6 91002608 91002721 -98276833 - L1MC/D LINE L1 -743 5425 5317 261 363 22 11 chr6 91002991 91003082 -98276472 - L2 LINE L2 -30 3242 3151 22 80 0 0 chr6 91003294 91003344 -98276210 + AT_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr6 91003531 91003566 -98275988 + AT_rich Low_complexity Low_complexity 1 35 0 335 284 0 18 chr6 91003833 91003942 -98275612 + L1ME LINE L1 5256 5362 -2446 635 261 27 0 chr6 91004116 91004302 -98275252 - MLT1F LTR MaLR -52 490 322 271 160 20 0 chr6 91004320 91004370 -98275184 - MLT1F LTR MaLR -482 60 10 250 350 41 4 chr6 91004382 91004628 -98274926 + L1ME LINE L1 5571 5825 -296 26 0 0 0 chr6 91004674 91004700 -98274854 + AT_rich Low_complexity Low_complexity 1 26 0 263 304 80 9 chr6 91006485 91006597 -98272957 + L2 LINE L2 3152 3271 -1 309 280 70 49 chr6 91006722 91006865 -98272689 - MLT1J2 LTR MaLR -31 419 274 32 57 0 0 chr6 91007702 91007755 -98271799 + AT_rich Low_complexity Low_complexity 1 53 0 726 230 17 11 chr6 91008054 91008228 -98271326 + MER5B DNA MER1_type 3 177 -1 189 139 0 93 chr6 91008526 91008569 -98270985 - MIR SINE MIR 0 262 224 2124 218 86 3 chr6 91008704 91009368 -98270186 - L1MC4 LINE L1 0 8042 7240 228 67 0 0 chr6 91009370 91009400 -98270154 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 2408 214 51 14 chr6 91009400 91009984 -98269570 - L1MC4 LINE L1 -975 7067 6462 333 294 144 22 chr6 91010396 91010576 -98268978 - L1MC4 LINE L1 -2193 5615 5414 222 213 42 0 chr6 91011806 91011867 -98267687 - MIR SINE MIR -52 156 94 203 297 31 31 chr6 91012259 91012323 -98267231 + L2 LINE L2 3242 3305 -8 545 280 140 26 chr6 91012602 91012873 -98266681 - L2 LINE L2 -2 3311 3010 310 295 93 23 chr6 91013102 91013231 -98266323 - L2 LINE L2 -14 3299 3162 1115 248 72 27 chr6 91013351 91013872 -98265682 + MER34 LTR ERV1 8 564 -21 720 203 153 12 chr6 91015910 91016073 -98263481 - MER5A DNA MER1_type 0 189 4 472 259 222 5 chr6 91016535 91016724 -98262830 - MIR SINE MIR -21 241 12 183 240 0 100 chr6 91016762 91016812 -98262742 + L2 LINE L2 3210 3254 -18 2228 100 7 3 chr6 91017094 91017393 -98262161 - AluSp SINE Alu -13 300 1 2234 76 16 38 chr6 91017996 91018310 -98261244 + AluSg SINE Alu 1 307 -3 245 170 21 0 chr6 91020279 91020326 -98259228 + LTR33A LTR ERVL 475 522 -1 1951 131 3 20 chr6 91020426 91020724 -98258830 + AluSx SINE Alu 1 293 -19 626 312 48 17 chr6 91021244 91021600 -98257954 - MLT1L LTR MaLR -130 485 119 1011 183 5 58 chr6 91021723 91021931 -98257623 + AluJo SINE Alu 1 197 -115 212 231 46 31 chr6 91072146 91072211 -98207343 + GA-rich Low_complexity Low_complexity 3 68 0 28 29 0 0 chr6 91072971 91073006 -98206548 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr6 91073372 91073411 -98206143 + AT_rich Low_complexity Low_complexity 1 39 0 6783 92 1 2 chr6 91073862 91074815 -98204739 + L1P LINE L1 4099 5050 -1096 1330 168 44 71 chr6 91074939 91075236 -98204318 + AluJo SINE Alu 1 289 -23 764 291 85 67 chr6 91075239 91075402 -98204152 - L2 LINE L2 -569 2745 2586 2164 62 0 55 chr6 91075402 91075711 -98203843 + AluY SINE Alu 1 292 -19 764 291 85 67 chr6 91075711 91076055 -98203499 - L2 LINE L2 -728 2586 2229 579 171 79 55 chr6 91076548 91076712 -98202842 - LTR45B LTR ERV1 0 489 322 386 186 144 17 chr6 91076780 91076898 -98202656 - LTR45 LTR ERV1 -392 133 1 2991 213 40 2 chr6 91077295 91077924 -98201630 - MER82 DNA MER2_type 0 653 1 197 65 32 0 chr6 91078163 91078194 -98201360 + (TG)n Simple_repeat Simple_repeat 2 33 0 309 276 159 0 chr6 91078575 91078745 -98200809 + L1ME4a LINE L1 5753 5949 -172 1756 177 3 3 chr6 91078921 91079209 -98200345 - AluJb SINE Alu -24 288 1 21 0 0 0 chr6 91079882 91079903 -98199651 + AT_rich Low_complexity Low_complexity 1 21 0 701 90 0 141 chr6 91080887 91081043 -98198511 + AluSp/q SINE Alu 179 312 -1 23 0 0 0 chr6 91081396 91081419 -98198135 + AT_rich Low_complexity Low_complexity 1 23 0 299 251 105 94 chr6 91082787 91083245 -98196309 + L1ME4a LINE L1 5576 6038 -83 6176 189 54 17 chr6 91083593 91083810 -98195744 + L1MC1 LINE L1 3957 4164 -2169 2370 84 0 34 chr6 91083810 91084132 -98195422 + AluY SINE Alu 1 311 0 6176 189 54 17 chr6 91084132 91084973 -98194581 + L1MC1 LINE L1 4164 4972 -1361 572 101 0 0 chr6 91084973 91085052 -98194502 + MADE1 DNA Mariner 2 80 0 6176 189 54 17 chr6 91085052 91086285 -98193269 + L1MC1 LINE L1 4972 6333 0 1932 185 12 3 chr6 91086963 91087304 -98192250 - MER2 DNA MER2_type 0 344 1 3715 260 52 62 chr6 91087748 91089151 -98190403 - MER69 DNA AcHobo -1136 1390 2 493 215 142 15 chr6 91089340 91089511 -98190043 - MIR SINE MIR -11 251 59 272 211 74 183 chr6 91089541 91089807 -98189747 - MER102b DNA MER1_type -1100 328 99 1755 143 40 27 chr6 91089807 91090107 -98189447 + AluSq SINE Alu 7 310 -3 272 211 74 183 chr6 91090107 91090152 -98189402 - MER102b DNA MER1_type -1329 99 51 189 295 0 49 chr6 91090310 91090371 -98189183 + L2 LINE L2 3214 3271 -1 25 0 0 0 chr6 91090515 91090540 -98189014 + AT_rich Low_complexity Low_complexity 1 25 0 1559 163 10 59 chr6 91090600 91090907 -98188647 + AluJo SINE Alu 1 292 -20 24 67 0 0 chr6 91090916 91090961 -98188593 + AT_rich Low_complexity Low_complexity 1 45 0 6007 83 41 1 chr6 91092476 91093347 -98186207 + L1PA13 LINE L1 5258 6163 0 1199 229 60 0 chr6 91094097 91094411 -98185143 - MER63 DNA MER1_type -1 1061 729 297 264 160 0 chr6 91094615 91094721 -98184833 - L2 LINE L2 -3 3269 3147 228 305 86 29 chr6 91096537 91096642 -98182912 - L2 LINE L2 0 3272 3162 268 273 98 28 chr6 91097529 91097672 -98181882 + MLT1J2 LTR MaLR 1 153 -297 273 189 135 54 chr6 91098647 91098721 -98180833 - MLT1I LTR MaLR -229 180 101 186 71 0 0 chr6 91099703 91099731 -98179823 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 510 333 34 0 chr6 91100319 91100466 -98179088 - MER91A DNA MER1_type -43 153 2 634 225 78 0 chr6 91101056 91101198 -98178356 + MIR SINE MIR 77 229 -33 249 315 54 11 chr6 91101309 91101456 -98178098 + MIR SINE MIR 54 207 -55 22 56 0 0 chr6 91101655 91101691 -98177863 + AT_rich Low_complexity Low_complexity 1 36 0 1076 196 18 13 chr6 91101826 91102050 -98177504 + AluJo SINE Alu 84 308 -4 2294 73 0 30 chr6 91102126 91102426 -98177128 + AluSx SINE Alu 14 304 -8 396 0 0 0 chr6 91102426 91102470 -98177084 + (TA)n Simple_repeat Simple_repeat 2 45 0 1764 185 27 0 chr6 91102652 91102950 -98176604 - AluJb SINE Alu -6 306 1 403 253 106 103 chr6 91103127 91103514 -98176040 + MLT1L LTR MaLR 122 509 -2 186 107 0 0 chr6 91103615 91103643 -98175911 - MIR3 SINE MIR -6 202 175 910 191 0 0 chr6 91103888 91104040 -98175514 + AluJb SINE Alu 137 288 -24 792 195 0 0 chr6 91104040 91104204 -98175350 + GA-rich Low_complexity Low_complexity 1 164 0 339 230 23 35 chr6 91104746 91104833 -98174721 + L2 LINE L2 3223 3308 -5 1646 194 0 41 chr6 91104962 91105297 -98174257 - AluJo SINE Alu 0 323 1 13732 150 45 37 chr6 91106194 91111121 -98168433 + L1MA2 LINE L1 1363 6382 -1340 2035 147 132 5 chr6 91111121 91111501 -98168053 - MSTA LTR MaLR 0 428 1 13732 150 45 37 chr6 91111501 91112826 -98166728 + L1MA2 LINE L1 6382 7695 -27 25 0 0 0 chr6 91112836 91112861 -98166693 + AT_rich Low_complexity Low_complexity 1 25 0 1552 222 3 22 chr6 91114639 91114995 -98164559 - MLT1A2 LTR MaLR -2 372 24 3143 147 52 7 chr6 91115044 91115615 -98163939 - MER50 LTR ERV1 -23 711 115 327 324 14 14 chr6 91115622 91115767 -98163787 + LOR1-int LTR ERV1 4989 5133 -1989 365 299 58 40 chr6 91115880 91116158 -98163396 + LOR1-int LTR ERV1 7383 7665 -455 626 71 30 0 chr6 91116184 91116283 -98163271 - HSMAR1 DNA Mariner -1183 104 3 2194 211 22 46 chr6 91116943 91117489 -98162065 + MER87 LTR ERV1 1 533 -8 183 80 0 0 chr6 91117529 91117554 -98162000 + (TA)n Simple_repeat Simple_repeat 2 26 0 212 263 147 21 chr6 91117692 91117787 -98161767 + L3 LINE CR1 1433 1539 -38 2119 159 64 10 chr6 91117801 91118192 -98161362 + MLT2D LTR ERVL 1 412 -2 200 363 88 9 chr6 91119313 91119426 -98160128 + L2 LINE L2 3025 3146 -167 673 219 32 91 chr6 91119457 91119676 -98159878 + MIR SINE MIR 29 234 -28 406 315 47 0 chr6 91119716 91119843 -98159711 + L2 LINE L2 3172 3304 -9 788 274 134 50 chr6 91120635 91121432 -98158122 - HAL1 LINE L1 -1114 1393 530 243 290 110 0 chr6 91121678 91121778 -98157776 + MER115 DNA AcHobo 346 456 -237 231 253 168 11 chr6 91121819 91121914 -98157640 + MIR3 SINE MIR 94 203 -5 1025 251 59 49 chr6 91122649 91123139 -98156415 + REP3 LTR ERV 21 515 -47 241 291 76 44 chr6 91123349 91123507 -98156047 - MLT1L LTR MaLR -236 379 217 203 349 174 27 chr6 91124347 91124496 -98155058 + L2 LINE L2 3097 3267 -5 1456 268 85 20 chr6 91124695 91125386 -98154168 + L1MC4a LINE L1 5260 5995 -1813 27 29 0 0 chr6 91125492 91125526 -98154028 + AT_rich Low_complexity Low_complexity 1 34 0 283 253 40 0 chr6 91125551 91125626 -98153928 + MIR SINE MIR 37 114 -148 201 210 0 0 chr6 91127201 91127263 -98152291 + T-rich Low_complexity Low_complexity 1 62 0 435 110 305 78 chr6 91127636 91127790 -98151764 + MER53 DNA DNA 1 189 0 213 226 57 0 chr6 91128727 91128780 -98150774 + L2 LINE L2 3258 3313 0 442 262 28 35 chr6 91129207 91129352 -98150202 - MIR SINE MIR -44 218 75 1468 92 0 0 chr6 91129604 91129799 -98149755 + L1PA7 LINE L1 5947 6141 -13 28 0 0 0 chr6 91129800 91129828 -98149726 + AT_rich Low_complexity Low_complexity 1 28 0 357 237 11 32 chr6 91129884 91129977 -98149577 - MER5A DNA MER1_type -43 146 56 263 284 49 0 chr6 91130414 91130495 -98149059 - L2 LINE L2 0 3272 3188 318 243 107 19 chr6 91131610 91131713 -98147841 - L2 LINE L2 -9 3304 3193 428 313 106 18 chr6 91131783 91132010 -98147544 + MIR SINE MIR 16 262 0 327 200 63 32 chr6 91132372 91132467 -98147087 - MER103 DNA DNA -57 109 12 211 333 0 0 chr6 91132614 91132668 -98146886 + MIR SINE MIR 59 112 -150 247 380 53 0 chr6 91133159 91133272 -98146282 + L2 LINE L2 3154 3272 0 716 238 31 48 chr6 91133854 91134148 -98145406 - L1MC5 LINE L1 -48 7913 7625 204 222 22 0 chr6 91134534 91134579 -98144975 + GA-rich Low_complexity Low_complexity 4 49 0 276 247 106 0 chr6 91134720 91134805 -98144749 - MIR SINE MIR -65 197 104 325 214 138 41 chr6 91135980 91136125 -98143429 - MLT1K LTR MaLR -16 572 414 325 216 55 0 chr6 91136125 91136207 -98143347 + MSTD LTR MaLR 5 80 -348 13501 158 36 74 chr6 91136207 91137737 -98141817 + L1MA2 LINE L1 21 1608 -5957 336 48 0 0 chr6 91137737 91137779 -98141775 + (CA)n Simple_repeat Simple_repeat 1 42 0 240 35 0 0 chr6 91137778 91137807 -98141747 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 13501 158 36 74 chr6 91137779 91139131 -98140423 + L1MA2 LINE L1 1608 3010 -4555 2249 102 0 0 chr6 91139131 91139442 -98140112 + AluSx SINE Alu 1 311 0 13501 158 36 74 chr6 91139442 91139544 -98140010 + L1MA2 LINE L1 3010 3114 -4451 1158 71 0 0 chr6 91139544 91139685 -98139869 + AluY SINE Alu 156 296 -15 13501 158 36 74 chr6 91139685 91140308 -98139246 + L1MA2 LINE L1 3114 3866 -3699 9875 173 14 11 chr6 91140335 91140731 -98138823 + L1MA2 LINE L1 4102 4495 -3070 5269 134 29 3 chr6 91140731 91142156 -98137398 + L1PA14 LINE L1 4713 6161 0 9875 173 14 11 chr6 91142156 91143864 -98135690 + L1MA2 LINE L1 4495 6213 -1352 1263 96 0 0 chr6 91143864 91144055 -98135499 + AluSg/x SINE Alu 123 313 0 6450 133 14 7 chr6 91144055 91145567 -98133987 + L1MA2 LINE L1 6203 7723 0 1469 194 24 33 chr6 91145578 91145908 -98133646 + MSTD LTR MaLR 70 396 0 884 291 35 4 chr6 91145908 91146166 -98133388 - MLT1K LTR MaLR -169 419 154 231 150 67 0 chr6 91146304 91146364 -98133190 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 1150 238 129 74 chr6 91146824 91146971 -98132583 + MER69B DNA AcHobo 3 141 -2385 1903 112 2 122 chr6 91146971 91147365 -98132189 + L1PA16 LINE L1 5809 6155 -11 1150 238 129 74 chr6 91147365 91147971 -98131583 + MER69B DNA AcHobo 141 865 -1661 1639 170 79 0 chr6 91147971 91148248 -98131306 + AluJo SINE Alu 2 300 -12 1150 238 129 74 chr6 91148248 91148272 -98131282 + MER69B DNA AcHobo 865 886 -340 4173 73 6 21 chr6 91148912 91149952 -98129602 - MER11A LTR ERVK 0 1266 1 2105 221 84 43 chr6 91150009 91150972 -98128582 + L1ME2 LINE L1 4503 5522 -644 2499 71 0 0 chr6 91150972 91151266 -98128288 - AluY SINE Alu -17 294 1 2105 221 84 43 chr6 91151266 91151491 -98128063 + L1ME2 LINE L1 5522 5736 -430 1436 211 130 33 chr6 91151493 91151903 -98127651 - MSTB2 LTR MaLR 0 457 4 831 241 32 4 chr6 91151905 91152154 -98127400 + L1ME2 LINE L1 5736 5991 -173 2017 179 6 15 chr6 91152195 91152535 -98127019 + MER1B DNA MER1_type 1 337 0 238 325 162 0 chr6 91154362 91154516 -98125038 + MIR3 SINE MIR 30 208 0 226 346 10 10 chr6 91154672 91154776 -98124778 - MIR SINE MIR -110 152 49 693 153 30 124 chr6 91155019 91155221 -98124333 + MER96B DNA MER1_type? 1 183 -234 262 266 3 54 chr6 91155287 91155407 -98124147 + MLT1L LTR MaLR 380 597 -18 281 73 0 0 chr6 91156117 91156158 -98123396 - MADE1 DNA Mariner -37 43 3 1594 174 12 64 chr6 91156997 91157324 -98122230 + AluJb SINE Alu 3 312 0 184 316 105 0 chr6 91157324 91157381 -98122173 + MIR SINE MIR 45 107 -101 687 132 8 33 chr6 91157399 91157520 -98122034 - FRAM SINE Alu -17 159 42 1946 128 0 17 chr6 91158049 91158345 -98121209 - AluSx SINE Alu -3 309 19 23 0 0 0 chr6 91158639 91158662 -98120892 + AT_rich Low_complexity Low_complexity 1 23 0 383 275 227 19 chr6 91159087 91159294 -98120260 - MIR SINE MIR 0 262 13 487 299 109 11 chr6 91159877 91160061 -98119493 - MIR SINE MIR -11 251 50 474 342 69 57 chr6 91160117 91160506 -98119048 + HAL1 LINE L1 3 396 -2111 447 331 64 25 chr6 91160994 91161275 -98118279 + LTR16C LTR ERVL 198 489 -2 2313 62 0 74 chr6 91161953 91162278 -98117276 - AluSc SINE Alu -8 301 1 819 320 51 31 chr6 91162318 91163153 -98116401 - ERVL LTR ERVL -190 5464 4590 464 304 21 54 chr6 91163154 91163394 -98116160 + MLT1J2 LTR MaLR 2 233 -217 365 235 99 26 chr6 91163731 91163944 -98115610 - ERVL LTR ERVL -1337 4427 4136 1447 199 149 46 chr6 91163965 91164233 -98115321 - MLT1D LTR MaLR 0 505 177 2104 102 4 0 chr6 91164233 91164508 -98115046 - AluSp SINE Alu -8 305 30 1447 199 149 46 chr6 91164508 91164655 -98114899 - MLT1D LTR MaLR -328 177 47 826 274 45 24 chr6 91164683 91165148 -98114406 - ERVL LTR ERVL -1596 4168 3665 749 336 93 21 chr6 91165158 91165589 -98113965 - LTR33 LTR ERVL -4 517 56 3036 312 99 58 chr6 91165637 91166313 -98113241 - ERVL LTR ERVL -2121 3643 2996 2408 62 0 43 chr6 91166313 91166638 -98112916 - AluY SINE Alu 0 311 1 3036 312 99 58 chr6 91166638 91168471 -98111083 - ERVL LTR ERVL -2768 2996 1030 395 319 36 60 chr6 91168741 91168992 -98110562 - ERVL LTR ERVL -5104 660 416 180 152 0 0 chr6 91171031 91171064 -98108490 + A-rich Low_complexity Low_complexity 2 34 0 560 157 0 11 chr6 91172297 91172386 -98107168 + FLAM SINE Alu 39 126 -17 32 0 0 0 chr6 91173810 91173842 -98105712 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr6 91174566 91174597 -98104957 + AT_rich Low_complexity Low_complexity 1 31 0 488 249 176 38 chr6 91175189 91175478 -98104076 + L2 LINE L2 2982 3310 -3 2138 124 0 3 chr6 91175711 91176010 -98103544 + AluSq SINE Alu 1 298 -15 32 67 0 0 chr6 91176300 91176360 -98103194 + AT_rich Low_complexity Low_complexity 1 60 0 21 57 0 0 chr6 91176375 91176410 -98103144 + AT_rich Low_complexity Low_complexity 1 35 0 1669 126 84 7 chr6 91178632 91178918 -98100636 - Tigger4(Zombi) DNA MER2_type 0 2731 2424 1274 144 16 0 chr6 91178928 91179122 -98100432 - Tigger4(Zombi) DNA MER2_type -2534 197 1 2587 65 0 3 chr6 91179353 91179663 -98099891 + AluSc SINE Alu 1 309 0 342 230 200 67 chr6 91181823 91181958 -98097596 + L2 LINE L2 3160 3312 -1 1897 151 3 0 chr6 91182728 91183012 -98096542 + AluJo SINE Alu 2 286 -26 421 288 200 5 chr6 91183994 91184199 -98095355 - MIR SINE MIR -14 248 4 35 0 0 0 chr6 91185417 91185452 -98094102 + AT_rich Low_complexity Low_complexity 1 35 0 877 151 0 14 chr6 91186901 91187047 -98092507 - AluJb SINE Alu -2 310 167 234 214 177 19 chr6 91187185 91187289 -98092265 + MIR SINE MIR 42 162 -46 1836 191 0 0 chr6 91187405 91187714 -98091840 - AluJb SINE Alu -3 309 1 25 0 0 0 chr6 91188949 91188974 -98090580 + AT_rich Low_complexity Low_complexity 1 25 0 26 82 0 0 chr6 91189307 91189368 -98090186 + AT_rich Low_complexity Low_complexity 1 61 0 217 195 403 0 chr6 91189474 91189551 -98090003 - MIR3 SINE MIR -6 202 95 360 326 152 19 chr6 91189814 91190078 -98089476 + L3 LINE CR1 1142 1440 -137 244 215 38 13 chr6 91190348 91190427 -98089127 + L1ME1 LINE L1 6084 6164 -2 2271 72 3 39 chr6 91190433 91190738 -98088816 + AluSx SINE Alu 1 294 -18 1760 173 0 0 chr6 91191395 91191705 -98087849 - AluJb SINE Alu 0 310 1 360 335 162 24 chr6 91191712 91191795 -98087759 - L2 LINE L2 -608 2706 2636 320 250 99 70 chr6 91191795 91191967 -98087587 + MER5B DNA MER1_type 1 177 -1 360 335 162 24 chr6 91191967 91192519 -98087035 - L2 LINE L2 -678 2636 1983 227 248 208 20 chr6 91192548 91192649 -98086905 + MIR SINE MIR 113 232 -30 274 237 323 27 chr6 91192820 91193006 -98086548 + MIR SINE MIR 22 262 0 205 330 78 39 chr6 91193707 91193810 -98085744 + MIR SINE MIR 57 163 -99 550 222 183 7 chr6 91194044 91194197 -98085357 + MER5A DNA MER1_type 10 189 0 193 339 102 8 chr6 91194655 91194773 -98084781 + L2 LINE L2 3180 3308 -5 657 214 21 0 chr6 91195684 91195824 -98083730 + MIR SINE MIR 120 262 0 345 253 168 54 chr6 91195878 91196091 -98083463 + MIR SINE MIR 19 255 -7 640 93 37 56 chr6 91196091 91196199 -98083355 - AluSq/x SINE Alu -203 110 5 2325 146 32 66 chr6 91197456 91197678 -98081876 - L1MB2 LINE L1 -8 6163 5935 342 0 0 0 chr6 91197678 91197716 -98081838 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1451 181 77 4 chr6 91197720 91197979 -98081575 - AluJb SINE Alu -34 278 1 2325 146 32 66 chr6 91197979 91198251 -98081303 - L1MB2 LINE L1 -239 5932 5681 286 281 22 22 chr6 91198834 91198923 -98080631 - MIR3 SINE MIR -37 171 83 21 82 0 0 chr6 91198952 91199001 -98080553 + AT_rich Low_complexity Low_complexity 1 49 0 650 321 5 25 chr6 91199352 91199548 -98080006 - MIR3 SINE MIR -14 194 3 701 176 15 0 chr6 91199754 91199885 -98079669 + AluJb SINE Alu 1 133 -179 215 270 101 22 chr6 91201830 91201919 -98077635 + L2 LINE L2 3146 3241 -31 216 0 0 0 chr6 91203162 91203186 -98076368 + (A)n Simple_repeat Simple_repeat 1 24 0 33 0 0 0 chr6 91205773 91205806 -98073748 + GC_rich Low_complexity Low_complexity 1 33 0 1104 207 130 4 chr6 91207981 91208242 -98071312 - AluJo SINE Alu -6 296 3 23 0 0 0 chr6 91208682 91208705 -98070849 + AT_rich Low_complexity Low_complexity 1 23 0 530 233 52 123 chr6 91208932 91209152 -98070402 - L1ME LINE L1 -317 5804 5625 1926 152 0 0 chr6 91209152 91209442 -98070112 - AluSx SINE Alu -20 292 3 530 233 52 123 chr6 91209442 91209629 -98069925 - L1ME LINE L1 -496 5625 5426 277 249 72 22 chr6 91209638 91209819 -98069735 - L1ME LINE L1 -760 5386 5197 865 297 102 70 chr6 91212258 91212676 -98066878 + L2 LINE L2 2174 2577 -695 2297 101 7 0 chr6 91212676 91212973 -98066581 - AluSg SINE Alu -11 299 1 865 297 102 70 chr6 91212973 91213424 -98066130 + L2 LINE L2 2577 3077 -195 386 250 0 53 chr6 91213470 91213602 -98065952 - MLT1J LTR MaLR 0 511 387 406 249 33 11 chr6 91213628 91213809 -98065745 + L1M4 LINE L1 2455 2639 -3507 331 252 74 7 chr6 91213830 91213965 -98065589 + L1M4 LINE L1 2701 2844 -3302 631 217 8 0 chr6 91213973 91214093 -98065461 + FLAM_C SINE Alu 1 121 -22 17059 43 1 0 chr6 91214114 91216247 -98063307 - L1P LINE L1 -2176 3970 1836 11416 37 3 0 chr6 91216247 91218414 -98061140 + L1PA5 LINE L1 3974 6154 0 1989 267 80 11 chr6 91218414 91219220 -98060334 + L1M4 LINE L1 2926 3790 -2356 10013 215 32 27 chr6 91219224 91222317 -98057237 + L1MC2 LINE L1 2447 5490 -743 429 163 65 85 chr6 91223170 91223323 -98056231 + MER51D LTR ERV1 501 650 -7 1726 141 26 26 chr6 91223458 91223770 -98055784 + L1MC2 LINE L1 5679 5990 -354 1184 308 24 12 chr6 91223762 91224188 -98055366 + L1PA13 LINE L1 1223 1653 -5928 * 9514 234 15 51 chr6 91224248 91227096 -98052458 + L1PA13 LINE L1 2463 5209 -2375 5375 135 27 1 chr6 91227096 91228494 -98051060 + L1PA13 LINE L1 6174 7595 -6 191 30 0 61 chr6 91228509 91228542 -98051012 + (TAAAAA)n Simple_repeat Simple_repeat 6 36 0 3207 183 19 37 chr6 91228873 91229026 -98050528 + L1MC3 LINE L1 5931 5614 -730 1911 118 42 14 chr6 91229026 91229187 -98050367 - AluSx SINE Alu -16 296 122 189 0 0 0 chr6 91229187 91229208 -98050346 + (TG)n Simple_repeat Simple_repeat 2 22 0 1911 118 42 14 chr6 91229208 91229334 -98050220 - AluSx SINE Alu -190 122 1 3207 183 19 37 chr6 91229334 91229851 -98049703 + L1MC3 LINE L1 5613 6138 -206 326 192 123 0 chr6 91229857 91229930 -98049624 - Tigger5 DNA MER2_type 0 2323 2242 * 437 192 13 0 chr6 91229920 91229998 -98049556 + Tigger5 DNA MER2_type 2242 2320 -3 274 206 176 15 chr6 91229998 91230065 -98049489 - Tigger5 DNA MER2_type -2245 78 1 3918 163 122 101 chr6 91230068 91230178 -98049376 + L1MC3 LINE L1 6619 6725 -1060 2492 51 0 10 chr6 91230178 91230489 -98049065 - AluY SINE Alu -3 308 1 3918 163 122 101 chr6 91230489 91230863 -98048691 + L1MC3 LINE L1 6725 7090 -695 288 219 27 14 chr6 91230863 91230936 -98048618 + MLT1F1 LTR MaLR 35 108 -459 3918 163 122 101 chr6 91230936 91231520 -98048034 + L1MC3 LINE L1 7090 7784 -1 265 259 196 9 chr6 91231645 91231757 -98047797 + MIR SINE MIR 128 260 -2 198 211 58 0 chr6 91231881 91231933 -98047621 + MIR SINE MIR 74 128 -134 246 303 212 38 chr6 91232131 91232263 -98047291 - L2 LINE L2 0 3272 3118 572 251 25 49 chr6 91232963 91233126 -98046428 + MER63A DNA MER1_type 52 210 0 297 344 182 0 chr6 91233128 91233282 -98046272 + L2 LINE L2 2484 2665 -649 555 282 218 32 chr6 91233389 91233765 -98045789 + L2 LINE L2 2863 3308 -5 25 65 0 0 chr6 91234099 91234145 -98045409 + AT_rich Low_complexity Low_complexity 1 46 0 2558 108 17 6 chr6 91234150 91234510 -98045044 + THE1B LTR MaLR 1 364 0 329 309 41 17 chr6 91235688 91235862 -98043692 + MIR SINE MIR 30 206 -56 1636 187 0 0 chr6 91236270 91236532 -98043022 - AluJo SINE Alu -30 282 21 258 242 67 117 chr6 91236825 91236945 -98042609 + L2 LINE L2 3159 3272 0 236 178 22 0 chr6 91237021 91237066 -98042488 + Charlie8 DNA MER1_type 120 165 -2252 1500 251 163 27 chr6 91237311 91237834 -98041720 + Zaphod DNA AcHobo 1 594 -3437 556 158 196 84 chr6 91237837 91238122 -98041432 + MER33 DNA MER1_type 8 324 0 * 718 165 114 59 chr6 91238122 91238432 -98041122 + Zaphod DNA AcHobo 619 910 -3121 841 201 11 11 chr6 91238432 91238606 -98040948 - FAM SINE Alu 0 175 2 718 165 114 59 chr6 91238606 91238627 -98040927 + Zaphod DNA AcHobo 910 928 -3103 2003 144 7 7 chr6 91238627 91238933 -98040621 + AluSq SINE Alu 1 306 -7 718 165 114 59 chr6 91238933 91238952 -98040602 + Zaphod DNA AcHobo 928 990 -3041 558 178 50 39 chr6 91238953 91239133 -98040421 + Zaphod DNA AcHobo 3598 3779 -252 1250 179 67 5 chr6 91239143 91239367 -98040187 + AluJo SINE Alu 67 304 -8 737 261 57 12 chr6 91239368 91239613 -98039941 + Zaphod DNA AcHobo 3775 4030 -1 311 358 15 40 chr6 91240323 91240524 -98039030 + MIR SINE MIR 26 221 -41 23 33 0 0 chr6 91240652 91240682 -98038872 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 91241497 91241518 -98038036 + AT_rich Low_complexity Low_complexity 1 21 0 307 308 150 17 chr6 91243731 91243851 -98035703 - L2 LINE L2 -1 3271 3136 907 294 54 53 chr6 91243853 91244447 -98035107 - L2 LINE L2 0 3313 2713 241 291 0 0 chr6 91245232 91245287 -98034267 + (TG)n Simple_repeat Simple_repeat 2 56 0 1912 204 37 0 chr6 91245337 91245685 -98033869 + MLT1A1 LTR MaLR 1 361 -4 197 178 22 0 chr6 91245696 91245741 -98033813 + (TA)n Simple_repeat Simple_repeat 2 47 0 231 234 96 11 chr6 91245741 91245835 -98033719 + L1MC4 LINE L1 6614 6715 -1327 2934 216 56 65 chr6 91245894 91246734 -98032820 + L1ME1 LINE L1 4701 5539 -627 2067 137 85 40 chr6 91246734 91247014 -98032540 + MLT2A1 LTR ERVL 1 308 -136 271 43 0 43 chr6 91247014 91247061 -98032493 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 2067 137 85 40 chr6 91247061 91247205 -98032349 + MLT2A1 LTR ERVL 308 444 0 2934 216 56 65 chr6 91247205 91247824 -98031730 + L1ME1 LINE L1 5539 6162 -4 247 251 183 95 chr6 91248359 91248796 -98030758 - L2 LINE L2 -269 3044 2551 768 193 57 52 chr6 91249082 91249294 -98030260 + MLT1B LTR MaLR 1 213 -161 2067 102 0 0 chr6 91249316 91249692 -98029862 + AluSq SINE Alu 40 415 0 1004 175 0 0 chr6 91249698 91249858 -98029696 + MLT1B LTR MaLR 231 390 0 2566 151 19 14 chr6 91249939 91250295 -98029259 + MSTB LTR MaLR 1 361 -65 1833 150 20 10 chr6 91250295 91250608 -98028946 - AluSx SINE Alu 0 312 1 2566 151 19 14 chr6 91250608 91250675 -98028879 + MSTB LTR MaLR 361 426 0 8619 174 15 44 chr6 91250675 91251167 -98028387 + MSTB-int LTR MaLR 1 506 -1145 1572 185 11 4 chr6 91251167 91251476 -98028078 + AluJb SINE Alu 1 311 0 8619 174 15 44 chr6 91251476 91251718 -98027836 + MSTB-int LTR MaLR 506 753 -898 2059 163 85 12 chr6 91251718 91252117 -98027437 + MSTA LTR MaLR 1 428 0 8619 174 15 44 chr6 91252117 91253080 -98026474 + MSTB-int LTR MaLR 753 1651 0 2451 181 14 2 chr6 91253080 91253499 -98026055 + MSTB LTR MaLR 1 424 -2 869 224 59 12 chr6 91254105 91254427 -98025127 - L1MEc LINE L1 -3982 2414 2078 1089 161 66 38 chr6 91254486 91254809 -98024745 - MER33 DNA MER1_type -1 323 1 3131 245 82 30 chr6 91254812 91255263 -98024291 - L1MEc LINE L1 -4351 2045 1619 3021 113 26 60 chr6 91255263 91255416 -98024138 + MER75 DNA T2_type 1 158 -356 1774 131 109 0 chr6 91255416 91255691 -98023863 + AluSx SINE Alu 1 305 -7 3021 113 26 60 chr6 91255691 91256069 -98023485 + MER75 DNA T2_type 158 514 0 3131 245 82 30 chr6 91256069 91257477 -98022077 - L1MEc LINE L1 -4777 1619 46 501 353 148 29 chr6 91257505 91258202 -98021352 - L3 LINE CR1 -729 848 69 234 0 0 0 chr6 91258285 91258311 -98021243 + (TA)n Simple_repeat Simple_repeat 2 27 0 2334 86 3 3 chr6 91258311 91258613 -98020941 - AluSp SINE Alu -11 302 1 1581 173 0 0 chr6 91258675 91258929 -98020625 + AluJb SINE Alu 29 282 -30 291 54 0 0 chr6 91258936 91258973 -98020581 + (CA)n Simple_repeat Simple_repeat 1 37 0 186 43 0 0 chr6 91259631 91259654 -98019900 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 650 208 29 64 chr6 91259969 91260142 -98019412 - L2 LINE L2 -8 3305 3139 579 154 26 8 chr6 91260166 91260283 -98019271 - Charlie5 DNA MER1_type 0 2624 2506 1169 216 22 26 chr6 91260286 91260554 -98019000 - L1MD3 LINE L1 -25 7970 7704 1261 163 43 18 chr6 91260560 91260842 -98018712 - Charlie5 DNA MER1_type -75 2537 2249 380 85 19 132 chr6 91260921 91261027 -98018527 - Charlie5 DNA MER1_type -2485 127 34 2052 252 86 12 chr6 91261027 91261619 -98017935 - L2 LINE L2 -519 2795 2160 562 241 127 6 chr6 91264218 91264384 -98015170 + L2 LINE L2 3126 3311 -2 21 57 0 0 chr6 91266414 91266449 -98013105 + AT_rich Low_complexity Low_complexity 1 35 0 351 0 0 0 chr6 91267104 91267143 -98012411 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr6 91268181 91268202 -98011352 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 91269193 91269222 -98010332 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr6 91271399 91271437 -98008117 + AT_rich Low_complexity Low_complexity 1 38 0 271 185 200 0 chr6 91273678 91273743 -98005811 - MER81 DNA DNA -22 92 15 1761 245 113 43 chr6 91273970 91274813 -98004741 - L1ME3 LINE L1 -23 6139 5236 579 275 126 51 chr6 91274817 91275173 -98004381 - MER34B LTR ERV1 0 565 183 930 261 156 17 chr6 91275202 91275449 -98004105 - L1ME3 LINE L1 -1082 5064 4853 1941 161 0 3 chr6 91275449 91275753 -98003801 - AluJo SINE Alu -9 303 1 930 261 156 17 chr6 91275753 91276096 -98003458 - L1ME3 LINE L1 -1293 4853 4392 1117 172 43 38 chr6 91276160 91276369 -98003185 + AluJb SINE Alu 85 294 -18 1316 259 75 23 chr6 91276370 91276508 -98003046 - L1ME3 LINE L1 -1796 4350 4221 2259 89 0 35 chr6 91276508 91276823 -98002731 + AluSx SINE Alu 1 304 -8 1316 259 75 23 chr6 91276823 91277282 -98002272 - L1ME3 LINE L1 -1925 4221 3722 750 200 7 0 chr6 91277416 91277551 -98002003 - LTR38 LTR ERV1 0 556 421 5803 152 58 35 chr6 91277578 91277840 -98001714 - LTR57-int LTR ERVL -3748 1595 1306 12453 101 17 12 chr6 91277840 91279617 -97999937 - LTR38-int LTR ERV1 0 1786 1 3226 138 32 6 chr6 91279617 91280155 -97999399 - LTR38 LTR ERV1 0 556 5 978 219 20 5 chr6 91280888 91281084 -97998470 + MER58A DNA MER1_type 26 224 0 194 321 143 40 chr6 91281104 91281328 -97998226 + L3 LINE CR1 445 691 -886 1731 178 78 24 chr6 91281330 91281486 -97998068 - Charlie1b DNA MER1_type -2238 523 377 2316 71 0 0 chr6 91281486 91281793 -97997761 + AluY SINE Alu 1 307 0 1731 178 78 24 chr6 91281793 91282046 -97997508 - Charlie1b DNA MER1_type -2384 377 91 4010 150 24 13 chr6 91282201 91282907 -97996647 + L1MB8 LINE L1 5408 6121 -57 548 335 197 4 chr6 91282922 91283424 -97996130 + L2 LINE L2 354 952 -2362 512 344 10 60 chr6 91283514 91283752 -97995802 + L3 LINE CR1 1264 1485 -92 854 216 68 59 chr6 91283752 91283974 -97995580 - MER58A DNA MER1_type 0 224 1 512 344 10 60 chr6 91283974 91284037 -97995517 + L3 LINE CR1 1485 1550 -27 24 32 0 0 chr6 91284456 91284487 -97995067 + AT_rich Low_complexity Low_complexity 1 31 0 207 294 103 78 chr6 91284715 91284897 -97994657 + MIR SINE MIR 2 179 -59 345 205 48 36 chr6 91285544 91285627 -97993927 - L2 LINE L2 -10 3303 3220 26 0 0 0 chr6 91286028 91286054 -97993500 + AT_rich Low_complexity Low_complexity 1 26 0 2068 119 0 0 chr6 91286459 91286792 -97992762 - AluSx SINE Alu 0 333 1 779 276 75 0 chr6 91287008 91287236 -97992318 + MIR SINE MIR 11 255 -7 658 210 77 50 chr6 91287283 91287513 -97992041 + L1MB4 LINE L1 5934 6168 -12 221 262 16 0 chr6 91287644 91287705 -97991849 - L2 LINE L2 0 3313 3252 192 324 127 0 chr6 91288533 91288604 -97990950 - MIR SINE MIR -123 139 60 1622 162 175 10 chr6 91288607 91288964 -97990590 - MSTB LTR MaLR 0 373 1 1047 137 22 6 chr6 91289060 91289242 -97990312 + AluSg/x SINE Alu 119 303 -7 41 0 0 0 chr6 91289320 91289361 -97990193 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr6 91289757 91289779 -97989775 + AT_rich Low_complexity Low_complexity 1 22 0 1811 285 170 12 chr6 91290252 91291021 -97988533 + L2 LINE L2 1784 2674 -640 1449 171 80 58 chr6 91291033 91291431 -97988123 - L1MA7 LINE L1 -11 6280 5874 712 253 59 46 chr6 91291464 91291768 -97987786 + L2 LINE L2 3005 3312 -1 658 221 0 0 chr6 91292670 91292801 -97986753 - FLAM_A SINE Alu -2 131 1 1045 217 49 20 chr6 91294267 91294511 -97985043 + MIR SINE MIR 2 252 -10 26 0 0 0 chr6 91295685 91295711 -97983843 + AT_rich Low_complexity Low_complexity 1 26 0 288 0 0 0 chr6 91296040 91296072 -97983482 + (TAA)n Simple_repeat Simple_repeat 3 34 0 419 326 86 20 chr6 91296589 91296834 -97982720 + MIR SINE MIR 2 262 0 198 298 129 48 chr6 91297064 91297188 -97982366 - MIR SINE MIR -18 244 111 22 0 0 0 chr6 91297524 91297546 -97982008 + AT_rich Low_complexity Low_complexity 1 22 0 29 78 0 0 chr6 91297770 91297834 -97981720 + AT_rich Low_complexity Low_complexity 1 64 0 31 26 0 0 chr6 91299860 91299898 -97979656 + AT_rich Low_complexity Low_complexity 1 38 0 4770 152 104 40 chr6 91301118 91302221 -97977333 - L1MC1 LINE L1 -1 6332 5185 292 286 74 49 chr6 91303200 91303403 -97976151 - L1ME LINE L1 -603 5559 5352 1308 189 3 51 chr6 91303651 91303947 -97975607 + AluJo SINE Alu 1 282 -30 698 269 86 86 chr6 91303988 91304836 -97974718 - L1ME LINE L1 -1529 4617 3770 420 266 45 47 chr6 91304841 91305045 -97974509 - MLT1H LTR MaLR 0 549 289 815 278 184 3 chr6 91305045 91305426 -97974128 - LTR16A LTR ERVL 0 450 1 516 264 63 63 chr6 91305433 91305702 -97973852 - MLT1H LTR MaLR -268 281 13 495 298 108 25 chr6 91305712 91306074 -97973480 - L1ME LINE L1 -2381 3765 3374 472 215 19 0 chr6 91306124 91306231 -97973323 - LTR39 LTR ERV1 -63 720 612 29136 71 82 2 chr6 91306265 91311826 -97967728 - L1PA6 LINE L1 -4 6150 4 193 147 0 29 chr6 91311827 91311861 -97967693 + MER5A DNA MER1_type 125 157 -32 252 0 0 0 chr6 91311907 91311935 -97967619 + (TA)n Simple_repeat Simple_repeat 2 29 0 1778 157 28 3 chr6 91311935 91312222 -97967332 - AluJo SINE Alu -18 294 1 264 290 102 45 chr6 91312713 91312889 -97966665 - MER5A DNA MER1_type -3 186 1 307 291 93 9 chr6 91313130 91313264 -97966290 - MIR3 SINE MIR -46 162 18 339 105 63 0 chr6 91313265 91313307 -97966247 + (TA)n Simple_repeat Simple_repeat 2 40 -62 2174 112 0 0 chr6 91313307 91313602 -97965952 + AluY SINE Alu 1 295 -16 339 105 63 0 chr6 91313602 91313654 -97965900 + (TA)n Simple_repeat Simple_repeat 40 102 0 189 284 104 15 chr6 91313960 91314027 -97965527 + MIR SINE MIR 40 112 -150 272 268 62 45 chr6 91314096 91314208 -97965346 + MIR SINE MIR 137 250 -12 736 271 53 20 chr6 91314272 91314516 -97965038 + MIR SINE MIR 11 262 0 667 269 57 32 chr6 91315133 91315415 -97964139 + MLT1L LTR MaLR 1 289 -326 595 256 62 17 chr6 91315514 91315539 -97964015 + MLT1L LTR MaLR 424 446 -169 216 0 0 0 chr6 91315539 91315563 -97963991 + (TA)n Simple_repeat Simple_repeat 2 25 0 595 256 62 17 chr6 91315563 91315713 -97963841 + MLT1L LTR MaLR 446 607 -8 415 338 87 14 chr6 91316093 91316312 -97963242 + MIR SINE MIR 2 236 -26 294 255 49 29 chr6 91316440 91316542 -97963012 - MIR3 SINE MIR -21 187 84 294 301 56 28 chr6 91318704 91318902 -97960652 - MIR3 SINE MIR -42 220 14 265 310 90 98 chr6 91319696 91319951 -97959603 + L2 LINE L2 2997 3249 -23 1519 153 8 8 chr6 91320148 91320389 -97959165 - AluSx SINE Alu -12 300 60 328 250 189 55 chr6 91320616 91320780 -97958774 - MER2 DNA MER2_type -2 343 158 26 0 0 0 chr6 91321379 91321405 -97958149 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr6 91327932 91327956 -97951598 + GC_rich Low_complexity Low_complexity 1 24 0 1011 147 24 12 chr6 91327969 91328139 -97951415 - MER2 DNA MER2_type -172 173 2 630 156 39 0 chr6 91328139 91328293 -97951261 + (TA)n Simple_repeat Simple_repeat 2 161 0 203 358 118 31 chr6 91328605 91328926 -97950628 - L2 LINE L2 -456 2858 2510 257 333 75 0 chr6 91329258 91329351 -97950203 + 7SLRNA srpRNA srpRNA 42 141 -179 539 274 201 5 chr6 91329551 91329770 -97949784 - MIR SINE MIR 0 262 1 5236 191 33 34 chr6 91329807 91331024 -97948530 - L1 LINE L1 -3597 3570 2347 2275 113 3 0 chr6 91331024 91331324 -97948230 - AluSg SINE Alu -9 301 1 5236 191 33 34 chr6 91331324 91332293 -97947261 - L1 LINE L1 -4820 2347 1379 20285 60 8 4 chr6 91332399 91332809 -97946745 + L1PA6 LINE L1 2755 3162 -2992 2181 87 10 7 chr6 91332809 91333108 -97946446 + AluY SINE Alu 1 300 -11 20285 60 8 4 chr6 91333108 91335943 -97943611 + L1PA6 LINE L1 3162 6013 -141 333 0 0 0 chr6 91337661 91337698 -97941856 + (CA)n Simple_repeat Simple_repeat 2 38 0 4099 76 26 5 chr6 91388094 91388676 -97890878 + L1PA7 LINE L1 5560 6153 -1 2544 238 33 28 chr6 91388679 91390256 -97889298 + L1MEc LINE L1 1457 3257 -2958 1408 279 26 40 chr6 91393081 91393185 -97886369 + L1MA9 LINE L1 5 109 -6032 1665 160 54 35 chr6 91393185 91393553 -97886001 - THE1C LTR MaLR 0 375 1 8751 151 21 38 chr6 91393553 91395158 -97884396 - THE1C-int LTR MaLR 0 1580 4 1751 143 63 30 chr6 91395161 91395524 -97884030 - THE1C LTR MaLR 0 375 1 1408 279 26 40 chr6 91395524 91395920 -97883634 + L1MA9 LINE L1 110 503 -5638 2855 195 98 30 chr6 91396004 91396768 -97882786 + L1MA9 LINE L1 664 1479 -4662 * 16408 199 44 21 chr6 91396735 91401534 -97878020 + L1PA13 LINE L1 139 5150 -1664 198 0 0 0 chr6 91401534 91401556 -97877998 + (CA)n Simple_repeat Simple_repeat 1 22 0 16408 199 44 21 chr6 91401556 91403258 -97876296 + L1PA13 LINE L1 5150 6811 -3 1565 294 42 8 chr6 91403361 91404106 -97875448 + L1M4c LINE L1 1196 2036 -4346 2151 131 7 10 chr6 91404113 91404411 -97875143 + AluSx SINE Alu 3 299 -13 33832 99 8 18 chr6 91404468 91406926 -97872628 + L1PA6 LINE L1 11 2493 -3661 504 0 0 0 chr6 91406926 91406982 -97872572 + (TA)n Simple_repeat Simple_repeat 2 57 0 33832 99 8 18 chr6 91406982 91410718 -97868836 + L1PA6 LINE L1 2493 6141 -13 13217 209 29 15 chr6 91410755 91414935 -97864619 + L1MA9 LINE L1 2525 6767 -196 492 126 0 58 chr6 91414935 91415022 -97864532 - MSTA LTR MaLR 0 428 347 * 536 153 0 0 chr6 91415017 91415102 -97864452 - MSTA LTR MaLR -341 87 3 520 255 65 56 chr6 91415103 91415319 -97864235 + L1MA10 LINE L1 6111 6328 -6 10708 202 19 15 chr6 91415337 91418635 -97860919 - L1PA13 LINE L1 -13 6150 2833 1956 125 18 0 chr6 91418641 91418958 -97860596 - AluSx SINE Alu 0 322 1 186 43 0 0 chr6 91419138 91419161 -97860393 + (CA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr6 91419442 91419463 -97860091 + AT_rich Low_complexity Low_complexity 1 21 0 2315 147 11 8 chr6 91419637 91420011 -97859543 - THE1C LTR MaLR 0 375 1 7661 117 162 46 chr6 91420016 91421427 -97858127 - THE1C-int LTR MaLR -6 1574 1 2253 138 22 8 chr6 91421427 91421797 -97857757 - THE1C LTR MaLR 0 375 1 1608 240 193 68 chr6 91421797 91422910 -97856644 + HAL1 LINE L1 639 2008 -499 1648 195 30 28 chr6 91422910 91423274 -97856280 - MLT1A1 LTR MaLR 0 365 1 1608 240 193 68 chr6 91423274 91423735 -97855819 + HAL1 LINE L1 2008 2410 -97 31 26 0 0 chr6 91423803 91423841 -97855713 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 91424177 91424198 -97855356 + AT_rich Low_complexity Low_complexity 1 21 0 1956 142 0 4 chr6 91424267 91424574 -97854980 + AluSx SINE Alu 3 308 0 1167 246 139 39 chr6 91424858 91425317 -97854237 - MLT1D LTR MaLR 0 505 1 2540 102 44 64 chr6 91425322 91425360 -97854194 - MLT2A1 LTR ERVL 0 444 407 189 0 0 0 chr6 91425360 91425381 -97854173 + (CA)n Simple_repeat Simple_repeat 2 22 0 2540 102 44 64 chr6 91425381 91425795 -97853759 - MLT2A1 LTR ERVL -37 407 1 34078 69 7 4 chr6 91425795 91430102 -97849452 - HERVL-A1 LTR ERVL 0 5654 1334 1245 154 10 0 chr6 91430102 91430113 -97849441 - L1PA13 LINE L1 -276 5887 5877 835 244 9 5 chr6 91430113 91430334 -97849220 - L1PB2 LINE L1 -275 5876 5655 10696 71 19 12 chr6 91430334 91431743 -97847811 - HERVL-A1 LTR ERVL -4236 1418 1 3001 64 35 60 chr6 91431743 91431902 -97847652 - MLT2A1 LTR ERVL 0 444 283 2154 130 0 0 chr6 91431902 91432210 -97847344 + AluSg SINE Alu 1 308 -2 3001 64 35 60 chr6 91432210 91432504 -97847050 - MLT2A1 LTR ERVL -161 283 2 247 277 80 0 chr6 91432909 91433021 -97846533 + L1 LINE L1 4925 5045 -1101 439 330 69 5 chr6 91433434 91433637 -97845917 + MLT1I LTR MaLR 194 409 0 206 277 0 0 chr6 91434180 91434227 -97845327 - L3b LINE CR1 -1 1582 1536 22 35 0 0 chr6 91434865 91434894 -97844660 + AT_rich Low_complexity Low_complexity 1 29 0 912 205 29 0 chr6 91435537 91435742 -97843812 + L1M4 LINE L1 4171 4381 -1765 8198 213 15 9 chr6 91435742 91437635 -97841919 - L1PB4 LINE L1 -771 5375 3472 3819 149 37 47 chr6 91437642 91438090 -97841464 + L1PB4 LINE L1 5372 5810 -346 204 40 0 0 chr6 91438090 91438115 -97841439 + (CA)n Simple_repeat Simple_repeat 2 26 0 3819 149 37 47 chr6 91438115 91438457 -97841097 + L1PB4 LINE L1 5810 6154 -2 3417 219 51 16 chr6 91438442 91439217 -97840337 + L1M4 LINE L1 4352 5169 -977 * 2044 136 7 10 chr6 91439217 91439518 -97840036 + AluSx SINE Alu 1 300 -12 3417 219 51 16 chr6 91439518 91439708 -97839846 + L1M4 LINE L1 5169 5351 -795 1178 163 20 0 chr6 91439899 91440095 -97839459 + L1PB1 LINE L1 1 200 -6663 3447 128 16 24 chr6 91440095 91440674 -97838880 + L1PB1 LINE L1 634 1207 -5656 * 8611 86 65 1 chr6 91440664 91441955 -97837599 + L1PB1 LINE L1 1535 2908 -3955 9982 185 18 8 chr6 91442581 91445706 -97833848 + L1PB1 LINE L1 2892 6507 -360 404 133 0 13 chr6 91445707 91445782 -97833772 + (CA)n Simple_repeat Simple_repeat 2 75 0 2566 87 8 11 chr6 91445784 91446151 -97833403 + L1PB1 LINE L1 6498 6863 -4 24 0 0 0 chr6 91446669 91446693 -97832861 + AT_rich Low_complexity Low_complexity 1 24 0 2217 125 0 6 chr6 91447516 91447828 -97831726 - AluSx SINE Alu 0 312 3 3874 203 111 16 chr6 91448520 91449470 -97830084 + MER45B DNA AcHobo 1 1040 0 5199 106 117 26 chr6 91450669 91451741 -97827813 + MER11A LTR ERVK 1 1266 0 396 268 32 19 chr6 91452658 91452815 -97826739 + MER113 DNA MER1_type? 3 161 -360 22 35 0 0 chr6 91454548 91454577 -97824977 + AT_rich Low_complexity Low_complexity 1 29 0 2337 93 6 6 chr6 91455523 91455835 -97823719 - AluSx SINE Alu 0 312 1 2227 94 10 0 chr6 91456669 91456976 -97822578 + AluSg SINE Alu 1 310 0 317 238 69 0 chr6 91457002 91457103 -97822451 + HAL1 LINE L1 39 146 -2361 1870 211 32 0 chr6 91457694 91458073 -97821481 - L1MB5 LINE L1 -28 6146 5750 350 222 160 42 chr6 91458087 91458231 -97821323 + HAL1 LINE L1 836 996 -1511 229 232 18 0 chr6 91458240 91458296 -97821258 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 332 205 238 16 chr6 91458299 91458421 -97821133 + HAL1 LINE L1 998 1146 -1361 821 245 164 12 chr6 91458470 91458793 -97820761 + HAL1 LINE L1 1529 1900 -607 1677 237 78 18 chr6 91458999 91459489 -97820065 + LTR33 LTR ERVL 1 519 -2 234 237 0 0 chr6 91459596 91459672 -97819882 + GA-rich Low_complexity Low_complexity 2 77 0 287 307 14 14 chr6 91460018 91460158 -97819396 - L1ME4a LINE L1 -206 5915 5776 1965 114 0 0 chr6 91461129 91461392 -97818162 - AluSx SINE Alu 0 312 50 4141 182 45 23 chr6 91461392 91462030 -97817524 + L1PB4 LINE L1 4482 5105 -1051 1950 139 0 4 chr6 91462030 91462310 -97817244 + AluSx SINE Alu 1 279 -33 264 30 0 0 chr6 91462310 91462343 -97817211 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 4141 182 45 23 chr6 91462343 91462684 -97816870 + L1PB4 LINE L1 5105 5437 -719 2366 93 0 3 chr6 91462684 91462986 -97816568 - AluSc SINE Alu -8 301 1 4141 182 45 23 chr6 91462986 91463650 -97815904 + L1PB4 LINE L1 5437 6155 -1 244 150 25 0 chr6 91463972 91464012 -97815542 - MLT1L LTR MaLR -6 609 569 1812 148 3 70 chr6 91464281 91464435 -97815119 + AluJb SINE Alu 1 123 -189 2536 60 3 10 chr6 91464435 91464749 -97814805 + AluSp SINE Alu 1 312 -1 1812 148 3 70 chr6 91464749 91464925 -97814629 + AluJb SINE Alu 123 309 -3 310 247 49 0 chr6 91464960 91465041 -97814513 - MLT1K LTR MaLR -339 249 165 320 277 40 61 chr6 91465584 91465732 -97813822 - L2 LINE L2 -5 3308 3164 262 255 80 25 chr6 91466880 91467080 -97812474 - L1M4 LINE L1 -3789 2357 2147 318 241 60 0 chr6 91467156 91467239 -97812315 + L2 LINE L2 3172 3259 -13 346 254 58 75 chr6 91468017 91468190 -97811364 - MLT1K LTR MaLR -417 171 2 365 318 171 27 chr6 91469226 91469484 -97810070 - L3 LINE CR1 -651 926 632 2328 88 0 3 chr6 91471914 91472210 -97807344 + AluSc SINE Alu 1 295 -14 1951 153 0 13 chr6 91472254 91472562 -97806992 + AluSx SINE Alu 1 304 -8 333 269 103 0 chr6 91473166 91473311 -97806243 + L1ME4a LINE L1 5951 6110 -11 211 360 21 89 chr6 91473331 91473667 -97805887 + L2 LINE L2 2869 3181 -91 795 189 20 7 chr6 91473762 91473910 -97805644 - AluJ SINE Alu -22 290 141 241 185 31 0 chr6 91473918 91473983 -97805571 + CT-rich Low_complexity Low_complexity 3 69 0 849 160 0 0 chr6 91473987 91474118 -97805436 - AluJ SINE Alu -169 133 3 246 32 0 0 chr6 91475754 91475785 -97803769 + (CA)n Simple_repeat Simple_repeat 2 32 0 497 281 146 5 chr6 91476473 91476665 -97802889 - MIR SINE MIR -36 226 8 33 56 0 0 chr6 91478918 91478972 -97800582 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr6 91479103 91479124 -97800430 + AT_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr6 91480368 91480424 -97799130 + AT_rich Low_complexity Low_complexity 1 56 0 23 78 0 0 chr6 91480612 91480663 -97798891 + AT_rich Low_complexity Low_complexity 1 51 0 183 80 0 0 chr6 91481302 91481327 -97798227 + (T)n Simple_repeat Simple_repeat 1 25 0 21 57 0 0 chr6 91481643 91481678 -97797876 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 91482713 91482735 -97796819 + AT_rich Low_complexity Low_complexity 1 22 0 272 233 244 0 chr6 91483212 91483302 -97796252 - MIR SINE MIR -70 192 81 231 208 38 0 chr6 91486075 91486128 -97793426 + L2 LINE L2 3218 3272 0 199 175 0 50 chr6 91488329 91488369 -97791185 + L2 LINE L2 3216 3253 -19 246 67 17 83 chr6 91488620 91488680 -97790874 + (GGGGA)n Simple_repeat Simple_repeat 3 58 0 781 143 8 0 chr6 91488992 91489111 -97790443 + THE1C LTR MaLR 253 372 -3 1834 133 103 6 chr6 91489111 91489442 -97790112 + MER47A DNA MER2_type 4 366 0 296 255 83 99 chr6 91489580 91489674 -97789880 + MIR SINE MIR 17 111 -151 1900 125 79 0 chr6 91489674 91489953 -97789601 - AluSx SINE Alu -11 301 1 296 255 83 99 chr6 91489953 91490077 -97789477 + MIR SINE MIR 111 234 -28 2183 167 21 25 chr6 91490345 91490782 -97788772 - L1MC3 LINE L1 -2 7783 7349 254 263 79 9 chr6 91492064 91492178 -97787376 + L2 LINE L2 1732 1853 -1461 649 253 48 0 chr6 91492196 91492362 -97787192 - MER5B DNA MER1_type -1 177 4 2389 49 0 0 chr6 91492487 91492771 -97786783 + AluY SINE Alu 1 284 -27 576 290 88 13 chr6 91493334 91493572 -97785982 - MIR SINE MIR -4 258 3 276 100 0 0 chr6 91493645 91493685 -97785869 + (A)n Simple_repeat Simple_repeat 1 40 0 2464 84 0 3 chr6 91494023 91494333 -97785221 + AluSg SINE Alu 2 310 0 271 349 157 0 chr6 91497144 91497310 -97782244 - MIR SINE MIR -15 247 56 208 222 19 0 chr6 91497563 91497589 -97781965 + (CATA)n Simple_repeat Simple_repeat 4 28 -30 1584 179 70 33 chr6 91497589 91497845 -97781709 + MER2 DNA MER2_type 3 275 -69 2278 113 7 7 chr6 91497845 91498154 -97781400 - AluSx SINE Alu -3 309 1 1584 179 70 33 chr6 91498154 91498227 -97781327 + MER2 DNA MER2_type 275 344 0 208 222 19 0 chr6 91498227 91498254 -97781300 + (CATA)n Simple_repeat Simple_repeat 28 58 0 1706 201 41 56 chr6 91498833 91499296 -97780258 + MLT1D LTR MaLR 1 456 -49 181 275 0 62 chr6 91500448 91500528 -97779026 - L3 LINE CR1 -4 1573 1499 332 289 58 8 chr6 91500653 91500774 -97778780 - MIR SINE MIR -13 249 123 837 229 0 0 chr6 91500776 91500942 -97778612 + FRAM SINE Alu 1 166 0 5540 230 49 16 chr6 91500969 91502283 -97777271 + L1PA11 LINE L1 4 2143 -5441 14165 155 15 9 chr6 91502283 91502898 -97776656 + L1PA11 LINE L1 4067 4676 -2936 2360 77 0 0 chr6 91502898 91503205 -97776349 + AluSx SINE Alu 1 307 0 14165 155 15 9 chr6 91503205 91505207 -97774347 + L1PA11 LINE L1 4676 6690 -922 1989 109 104 27 chr6 91505207 91505545 -97774009 - THE1B LTR MaLR 0 364 1 14165 155 15 9 chr6 91505545 91506475 -97773079 + L1PA11 LINE L1 6690 7612 0 2323 118 35 3 chr6 91506475 91506844 -97772710 + L1PA15 LINE L1 5769 6152 -13 282 29 0 0 chr6 91506944 91506979 -97772575 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr6 91507058 91507081 -97772473 + AT_rich Low_complexity Low_complexity 1 23 0 2325 104 0 3 chr6 91507194 91507503 -97772051 + AluSq SINE Alu 1 308 -5 2274 57 47 3 chr6 91507678 91507976 -97771578 + AluY SINE Alu 1 311 0 364 266 118 13 chr6 91508189 91508418 -97771136 + L1ME4a LINE L1 5734 5986 -135 31 44 0 0 chr6 91508466 91508511 -97771043 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr6 91508654 91508685 -97770869 + AT_rich Low_complexity Low_complexity 1 31 0 285 301 141 40 chr6 91509187 91509386 -97770168 - MIR SINE MIR -4 258 40 930 250 105 0 chr6 91510426 91510654 -97768900 - MIR SINE MIR 0 262 11 266 214 92 20 chr6 91510907 91511005 -97768549 - L1M4 LINE L1 -1428 4718 4614 28 71 0 0 chr6 91511099 91511155 -97768399 + AT_rich Low_complexity Low_complexity 1 56 0 946 317 133 7 chr6 91511497 91512172 -97767382 - L1M4 LINE L1 -1984 4162 3403 22 0 0 0 chr6 91513346 91513368 -97766186 + AT_rich Low_complexity Low_complexity 1 22 0 8100 242 35 31 chr6 91514208 91516209 -97763345 - L1P LINE L1 -1806 4340 2326 1514 189 14 17 chr6 91516209 91516505 -97763049 + AluJb SINE Alu 3 297 -15 8100 242 35 31 chr6 91516505 91516993 -97762561 - L1P LINE L1 -3820 2326 1841 793 70 44 9 chr6 91516995 91517109 -97762445 + MER41A LTR ERV1 437 554 0 4457 135 30 31 chr6 91517109 91517886 -97761668 + MER41A-int LTR ERV1 1 690 -5256 810 171 103 11 chr6 91517887 91518062 -97761492 + MER41A-int LTR ERV1 650 840 -4377 * 839 148 17 57 chr6 91518050 91518153 -97761401 + MER41A-int LTR ERV1 1939 2034 -4229 1852 163 14 0 chr6 91518153 91518447 -97761107 + AluSx SINE Alu 4 301 -11 839 148 17 57 chr6 91518447 91518519 -97761035 + MER41A-int LTR ERV1 2034 2107 -4156 * 6436 143 42 29 chr6 91518515 91520614 -97758940 + MER41-int LTR ERV1 2606 3893 -1122 1369 113 0 0 chr6 91520626 91520812 -97758742 + THE1B LTR MaLR 6 191 -173 1007 78 30 48 chr6 91520812 91520979 -97758575 + MER41-int LTR ERV1 4714 4877 -1069 2378 143 3 6 chr6 91520979 91521344 -97758210 + THE1B LTR MaLR 1 364 0 3474 115 80 26 chr6 91521361 91522426 -97757128 - MER11A LTR ERVK 0 1236 1 10805 109 21 0 chr6 91522426 91523963 -97755591 + THE1B-int LTR MaLR 12 1580 0 2386 105 37 6 chr6 91523963 91524316 -97755238 + THE1B LTR MaLR 1 364 0 7311 100 30 7 chr6 91524316 91525364 -97754190 + MER41A-int LTR ERV1 4873 5944 -2 3905 90 9 16 chr6 91525364 91525922 -97753632 + MER41A LTR ERV1 1 554 0 293 333 18 42 chr6 91525924 91526092 -97753462 - L1PA12 LINE L1 -5237 2344 2181 782 340 19 38 chr6 91526717 91527144 -97752410 - L1PA12 LINE L1 -6367 1207 789 185 128 0 26 chr6 91527779 91527818 -97751736 + (TA)n Simple_repeat Simple_repeat 2 39 0 1715 163 57 24 chr6 91528650 91529069 -97750485 + MER61D LTR ERV1 1 501 0 216 111 0 0 chr6 91530587 91530623 -97748931 + (CA)n Simple_repeat Simple_repeat 2 37 0 318 333 138 22 chr6 91534106 91534382 -97745172 - L1ME LINE L1 -446 5675 5368 213 307 0 13 chr6 91534781 91534856 -97744698 + GA-rich Low_complexity Low_complexity 1 74 0 345 308 126 78 chr6 91534921 91535509 -97744045 + L2 LINE L2 1733 2374 -940 228 67 0 0 chr6 91535509 91535539 -97744015 + (CA)n Simple_repeat Simple_repeat 2 31 0 345 308 126 78 chr6 91535539 91535792 -97743762 + L2 LINE L2 2374 2614 -700 547 191 48 0 chr6 91535800 91535905 -97743649 - Tigger3(Golem) DNA MER2_type 0 3038 2929 403 241 0 0 chr6 91536037 91536116 -97743438 - Tigger3(Golem) DNA MER2_type -2949 80 2 211 314 66 33 chr6 91536116 91536237 -97743317 + L2 LINE L2 2622 2746 -568 258 337 123 42 chr6 91536845 91537106 -97742448 - L2 LINE L2 -407 2907 2626 1957 102 0 28 chr6 91537107 91537433 -97742121 + AluSx SINE Alu 5 322 0 1947 89 0 0 chr6 91537735 91537992 -97741562 + AluSg1 SINE Alu 34 290 -19 22 0 0 0 chr6 91538878 91538900 -97740654 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 91539137 91539158 -97740396 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 91540167 91540188 -97739366 + AT_rich Low_complexity Low_complexity 1 21 0 252 262 140 9 chr6 91541276 91541383 -97738171 + MIR3 SINE MIR 40 160 -48 183 419 0 0 chr6 91541998 91542072 -97737482 + MIR3 SINE MIR 8 81 -127 30 45 0 0 chr6 91542845 91542889 -97736665 + AT_rich Low_complexity Low_complexity 1 44 0 611 101 0 0 chr6 91544726 91544815 -97734739 - AluSg/x SINE Alu -10 300 212 288 302 23 31 chr6 91545169 91545298 -97734256 + L1M1 LINE L1 5699 5826 -476 217 279 73 0 chr6 91546157 91546225 -97733329 - MIR SINE MIR -26 236 164 26 82 0 0 chr6 91546768 91546829 -97732725 + AT_rich Low_complexity Low_complexity 1 61 0 207 357 0 0 chr6 91547416 91547486 -97732068 + MIR SINE MIR 188 257 -5 4625 177 20 0 chr6 91550860 91551703 -97727851 - L1MB3 LINE L1 -36 6147 5288 319 119 34 34 chr6 91553340 91553399 -97726155 - Alu SINE Alu -8 294 236 21 36 0 0 chr6 91553490 91553518 -97726036 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr6 91558548 91558583 -97720971 + AT_rich Low_complexity Low_complexity 1 35 0 1598 201 49 37 chr6 91558634 91559042 -97720512 + MLT2B3 LTR ERVL 135 547 -7 234 254 21 0 chr6 91559097 91559239 -97720315 + (TA)n Simple_repeat Simple_repeat 1 145 0 229 200 221 42 chr6 91559344 91559439 -97720115 + L2 LINE L2 3193 3304 -9 2129 137 23 9 chr6 91560013 91560356 -97719198 + MER7A DNA MER2_type 1 346 0 234 62 0 0 chr6 91561628 91561660 -97717894 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 695 205 37 20 chr6 91561660 91561823 -97717731 - MLT1C LTR MaLR -53 407 251 1631 189 3 22 chr6 91561830 91562143 -97717411 - AluJo SINE Alu -3 309 3 221 149 45 30 chr6 91562322 91562389 -97717165 + A-rich Low_complexity Low_complexity 5 72 0 27 49 0 0 chr6 91562633 91562674 -97716880 + AT_rich Low_complexity Low_complexity 1 41 0 183 218 0 0 chr6 91563570 91563625 -97715929 + (ATG)n Simple_repeat Simple_repeat 3 57 0 23 0 0 0 chr6 91563867 91563890 -97715664 + AT_rich Low_complexity Low_complexity 1 23 0 697 309 39 9 chr6 91564339 91564572 -97714982 + MIR SINE MIR 23 262 0 188 356 46 11 chr6 91565453 91565540 -97714014 - MIR SINE MIR -78 130 41 269 238 206 7 chr6 91565644 91565778 -97713776 - MIR SINE MIR -48 214 56 252 321 0 24 chr6 91566527 91566611 -97712943 - L2 LINE L2 -55 3258 3177 796 150 13 78 chr6 91567320 91567473 -97712081 + MER20 DNA MER1_type 32 174 -45 446 49 16 0 chr6 91567611 91567672 -97711882 + (CA)n Simple_repeat Simple_repeat 1 62 0 198 220 0 0 chr6 91569681 91569740 -97709814 + (TG)n Simple_repeat Simple_repeat 2 60 0 1635 184 3 3 chr6 91570482 91570765 -97708789 - AluJb SINE Alu -29 283 1 197 317 29 39 chr6 91570868 91570972 -97708582 - L3 LINE CR1 -482 1095 993 477 261 189 33 chr6 91571410 91571590 -97707964 - MIR SINE MIR -33 229 22 201 156 0 44 chr6 91571568 91571613 -97707941 + L2 LINE L2 3267 3309 -4 * 198 103 0 0 chr6 91572301 91572330 -97707224 + (CA)n Simple_repeat Simple_repeat 2 30 0 1635 203 0 10 chr6 91572723 91573014 -97706540 + AluJb SINE Alu 1 288 -24 374 246 37 0 chr6 91573833 91573967 -97705587 + L1ME LINE L1 4466 4604 -1542 282 116 0 0 chr6 91573973 91574016 -97705538 + (TG)n Simple_repeat Simple_repeat 2 44 0 270 297 61 40 chr6 91574108 91574256 -97705298 + L1ME LINE L1 4696 4846 -1300 471 260 47 10 chr6 91574354 91574942 -97704612 + L1ME LINE L1 4998 5695 -475 5018 107 2 43 chr6 91574944 91575764 -97703790 + L1P LINE L1 819 1605 -4541 10359 46 0 1 chr6 91575764 91577958 -97701596 + L1PA6 LINE L1 4024 6154 0 29 0 0 0 chr6 91577958 91577987 -97701567 + AT_rich Low_complexity Low_complexity 1 29 0 630 209 8 0 chr6 91578003 91578132 -97701422 + MER57A LTR ERV1 273 402 -1 2031 115 13 13 chr6 91578160 91578465 -97701089 + AluSx SINE Alu 1 305 -7 201 156 0 0 chr6 91578490 91578522 -97701032 + GA-rich Low_complexity Low_complexity 1 32 0 617 278 123 19 chr6 91578821 91579033 -97700521 + MIR SINE MIR 13 246 -16 467 340 127 35 chr6 91579176 91579609 -97699945 - L3 LINE CR1 -2 1575 1103 22 0 0 0 chr6 91579625 91579647 -97699907 + AT_rich Low_complexity Low_complexity 1 22 0 780 224 161 0 chr6 91579812 91580017 -97699537 + MIR SINE MIR 4 241 -21 195 305 0 34 chr6 91580964 91581023 -97698531 + MIR SINE MIR 23 79 -129 259 261 85 46 chr6 91581098 91581228 -97698326 + MIR SINE MIR 94 228 -34 4209 148 54 10 chr6 91581250 91582028 -97697526 - L1MA4 LINE L1 -1 6299 5488 2090 113 3 77 chr6 91582330 91582694 -97696860 + MER1B DNA MER1_type 1 337 0 201 240 20 0 chr6 91583736 91583786 -97695768 + (CA)n Simple_repeat Simple_repeat 2 52 0 * 307 183 63 8 chr6 91583764 91583890 -97695664 + (TA)n Simple_repeat Simple_repeat 1 133 0 209 136 0 23 chr6 91583955 91583999 -97695555 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 2123 108 0 0 chr6 91584595 91584874 -97694680 - AluSg SINE Alu -31 279 1 374 206 33 0 chr6 91584874 91584966 -97694588 - MIR SINE MIR -36 226 132 613 282 208 19 chr6 91584981 91585495 -97694059 - L1M4 LINE L1 -743 5403 4793 1428 209 80 35 chr6 91585581 91585955 -97693599 + MSTD LTR MaLR 6 396 0 529 190 20 10 chr6 91585957 91586057 -97693497 + MER58B DNA MER1_type 239 339 -2 24 32 0 0 chr6 91586172 91586203 -97693351 + AT_rich Low_complexity Low_complexity 1 31 0 2699 39 0 0 chr6 91586221 91586532 -97693022 + AluY SINE Alu 1 311 0 270 339 56 14 chr6 91586680 91587037 -97692517 - L1M4 LINE L1 -1701 4445 4074 1062 275 115 18 chr6 91587040 91587483 -97692071 + L2 LINE L2 2823 3308 -5 253 268 89 16 chr6 91589572 91589695 -97689859 - MIR SINE MIR -116 146 15 208 270 162 0 chr6 91591165 91591239 -97688315 - L3 LINE CR1 -80 1497 1412 702 307 191 25 chr6 91591249 91591721 -97687833 + L3 LINE CR1 997 1546 -31 1806 167 3 26 chr6 91591859 91592171 -97687383 + AluJb SINE Alu 1 305 -7 1410 188 0 14 chr6 91594308 91594590 -97684964 + L1PA16 LINE L1 5873 6150 -16 24 0 0 0 chr6 91594597 91594621 -97684933 + AT_rich Low_complexity Low_complexity 1 24 0 369 284 107 14 chr6 91594874 91595089 -97684465 + L1M4 LINE L1 4089 4323 -1823 2232 120 7 0 chr6 91595526 91595835 -97683719 + AluSq SINE Alu 1 311 -2 871 301 96 34 chr6 91596322 91596990 -97682564 + HAL1 LINE L1 1105 1813 -694 2048 126 7 7 chr6 91597054 91597356 -97682198 + AluSx SINE Alu 3 304 -8 375 210 42 63 chr6 91597730 91597873 -97681681 + HAL1b LINE L1 752 891 -457 203 321 0 0 chr6 91598106 91598159 -97681395 + (TG)n Simple_repeat Simple_repeat 1 53 0 400 318 16 16 chr6 91598195 91598321 -97681233 + LTR67 LTR ERVL 40 165 -392 2117 121 19 0 chr6 91599287 91599594 -97679960 - AluSq SINE Alu 0 313 1 21 0 0 0 chr6 91600050 91600071 -97679483 + AT_rich Low_complexity Low_complexity 1 21 0 198 282 165 12 chr6 91600311 91600396 -97679158 + MIR SINE MIR 47 144 -64 2135 90 10 3 chr6 91600519 91600809 -97678745 + AluSc SINE Alu 1 292 -17 468 217 19 19 chr6 91601006 91601112 -97678442 - L2 LINE L2 -9 3304 3199 204 279 0 29 chr6 91602774 91602842 -97676712 + A-rich Low_complexity Low_complexity 5 70 0 25 51 0 0 chr6 91602861 91602900 -97676654 + AT_rich Low_complexity Low_complexity 1 39 0 453 337 127 19 chr6 91603494 91603761 -97675793 - L2 LINE L2 -9 3304 3009 5289 91 121 41 chr6 91603769 91604852 -97674702 + MER11A LTR ERVK 1 1266 0 741 258 164 33 chr6 91604901 91605266 -97674288 - L2 LINE L2 -453 2861 2449 1800 241 116 17 chr6 91605976 91606622 -97672932 - L1ME3A LINE L1 -9 6230 5521 798 294 114 24 chr6 91606645 91607182 -97672372 - L1ME3A LINE L1 -890 5325 4741 2294 284 146 24 chr6 91607307 91609220 -97670334 - L1MEc LINE L1 -2069 4146 2029 562 274 58 24 chr6 91609422 91609630 -97669924 - L1MEc LINE L1 -4634 1762 1548 344 298 117 50 chr6 91609692 91609974 -97669580 - L1MEc LINE L1 -4918 1287 987 252 143 0 0 chr6 91609975 91610017 -97669537 + (CA)n Simple_repeat Simple_repeat 1 42 0 350 306 113 16 chr6 91610031 91610217 -97669337 - L1MEc LINE L1 -5388 1008 805 396 0 0 0 chr6 91610723 91610767 -97668787 + (CA)n Simple_repeat Simple_repeat 2 45 0 228 200 0 0 chr6 91613816 91613866 -97665688 + GA-rich Low_complexity Low_complexity 3 52 0 284 155 69 0 chr6 91615133 91615191 -97664363 + L1MA9 LINE L1 6026 6087 -225 856 149 26 62 chr6 91615194 91615389 -97664165 + L1MA9 LINE L1 6125 6312 0 852 184 42 14 chr6 91615842 91616054 -97663500 + L1MC3 LINE L1 7547 7764 -21 2178 97 31 3 chr6 91616466 91616756 -97662798 - AluSx SINE Alu -1 311 14 2122 113 26 7 chr6 91616761 91617063 -97662491 - AluSx SINE Alu -4 308 1 612 310 21 63 chr6 91617286 91617570 -97661984 + LTR67 LTR ERVL 1 272 -285 512 248 41 14 chr6 91617626 91617771 -97661783 + LTR67 LTR ERVL 396 544 -13 827 222 12 0 chr6 91618320 91618491 -97661063 + MER58B DNA MER1_type 167 339 -2 411 173 0 0 chr6 91618561 91618642 -97660912 + (TGGA)n Simple_repeat Simple_repeat 4 84 0 211 351 87 63 chr6 91619917 91620250 -97659304 - L2 LINE L2 0 3272 2932 22 56 0 0 chr6 91621478 91621514 -97658040 + AT_rich Low_complexity Low_complexity 1 36 0 1739 203 75 33 chr6 91621864 91622346 -97657208 + L1MC4a LINE L1 7307 7808 0 2257 106 0 3 chr6 91622856 91623158 -97656396 - AluSx SINE Alu -11 301 1 2117 124 0 10 chr6 91623474 91623772 -97655782 + AluSx SINE Alu 2 296 -16 1437 217 75 66 chr6 91624370 91624913 -97654641 - HsTC2 DNA Tc2 -40 1858 1311 298 310 63 28 chr6 91624929 91625071 -97654483 - HsTC2 DNA Tc2 -1751 147 1 22 35 0 0 chr6 91625105 91625134 -97654420 + AT_rich Low_complexity Low_complexity 1 29 0 313 224 159 9 chr6 91625446 91625553 -97654001 - LTR33A LTR ERVL -60 463 341 411 273 65 0 chr6 91625969 91626123 -97653431 - MIR SINE MIR -3 259 96 24 53 0 0 chr6 91626759 91626797 -97652757 + AT_rich Low_complexity Low_complexity 1 38 0 413 314 85 42 chr6 91626937 91627220 -97652334 + Tigger8 DNA MER2_type 3 297 -369 752 274 79 11 chr6 91627255 91627532 -97652022 + Tigger8 DNA MER2_type 355 650 -16 902 115 0 0 chr6 91627783 91627922 -97651632 - L1PA15 LINE L1 -1 6164 6026 1388 163 4 16 chr6 91627950 91628195 -97651359 - AluJb SINE Alu -24 288 47 4857 109 17 43 chr6 91628196 91629078 -97650476 - L1PA15 LINE L1 -128 6037 5180 331 192 64 26 chr6 91629286 91629364 -97650190 - MIR SINE MIR 0 262 182 16811 141 63 11 chr6 91629446 91632490 -97647064 + L1PBa LINE L1 2 3206 -3656 3872 155 21 1 chr6 91632507 91633171 -97646383 + L1MC1 LINE L1 5657 6333 0 1528 262 98 15 chr6 91634729 91635198 -97644356 + MLT1H LTR MaLR 35 542 -7 398 146 18 0 chr6 91635433 91635517 -97644037 - MSTB2 LTR MaLR 0 457 339 397 215 58 50 chr6 91635528 91635649 -97643905 + HAL1 LINE L1 2363 2484 -23 268 203 0 72 chr6 91636706 91636775 -97642779 + MLT1J LTR MaLR 101 164 -347 1722 182 46 0 chr6 91636967 91637296 -97642258 + MER2 DNA MER2_type 1 344 0 1014 169 4 106 chr6 91637332 91637569 -97641985 + AluJb SINE Alu 84 296 -16 311 296 8 64 chr6 91637695 91637820 -97641734 + MIR SINE MIR 2 119 -143 * 605 230 12 66 chr6 91637804 91638001 -97641553 + MIR SINE MIR 58 242 -20 190 211 19 19 chr6 91638031 91638083 -97641471 - MIR SINE MIR -59 203 152 252 246 121 46 chr6 91639065 91639305 -97640249 - L1MEd LINE L1 -4993 1126 869 2010 150 6 10 chr6 91639340 91639653 -97639901 - AluJb SINE Alu 0 312 1 446 303 123 57 chr6 91639754 91640299 -97639255 - L1MEd LINE L1 -5441 678 98 675 298 29 45 chr6 91640610 91640855 -97638699 + MLT2F LTR ERVL 422 662 -1 447 288 65 44 chr6 91640857 91641086 -97638468 - L1MC4a LINE L1 -1966 5842 5609 1500 260 67 23 chr6 91641161 91641596 -97637958 + MLT1J LTR MaLR 1 454 -57 1139 219 8 13 chr6 91641990 91642227 -97637327 - MER8 DNA MER2_type 0 239 4 731 268 16 0 chr6 91642953 91643136 -97636418 - MER5A DNA MER1_type 0 189 4 281 234 0 0 chr6 91643770 91643834 -97635720 + L1ME2 LINE L1 5513 5576 -588 239 151 0 57 chr6 91643870 91643923 -97635631 + L1ME2 LINE L1 5756 5805 -365 975 228 22 26 chr6 91644356 91644624 -97634930 + L1ME2 LINE L1 5783 6049 -115 308 324 7 50 chr6 91644723 91644862 -97634692 - MER94 DNA DNA -1 133 1 183 182 0 0 chr6 91644913 91644946 -97634608 - L2 LINE L2 -9 3304 3272 21 0 0 0 chr6 91645469 91645490 -97634064 + AT_rich Low_complexity Low_complexity 1 21 0 532 292 78 16 chr6 91645968 91646160 -97633394 - MIR SINE MIR -48 214 11 225 311 27 0 chr6 91646540 91646614 -97632940 + A-rich Low_complexity Low_complexity 2 77 0 234 128 0 0 chr6 91647776 91647815 -97631739 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 255 175 0 0 chr6 91647838 91647895 -97631659 + CT-rich Low_complexity Low_complexity 4 60 0 322 185 0 28 chr6 91647957 91648065 -97631489 + CT-rich Low_complexity Low_complexity 3 107 0 368 95 0 32 chr6 91648129 91648192 -97631362 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 207 102 41 20 chr6 91648232 91648281 -97631273 + CT-rich Low_complexity Low_complexity 2 51 0 1589 185 13 25 chr6 91648285 91648599 -97630955 - AluJo SINE Alu -1 311 2 785 176 0 0 chr6 91649054 91649179 -97630375 + AluSq/x SINE Alu 1 125 -188 1512 247 47 50 chr6 91649208 91649925 -97629629 + L1M4 LINE L1 2133 2848 -3298 2324 98 0 0 chr6 91649925 91650222 -97629332 - AluSq SINE Alu -16 297 1 1512 247 47 50 chr6 91650222 91650337 -97629217 + L1M4 LINE L1 2848 2962 -3184 732 305 65 23 chr6 91650354 91650738 -97628816 + L1ME LINE L1 17 416 -5654 5690 258 130 49 chr6 91651936 91653391 -97626163 - L2 LINE L2 0 3313 1977 1660 131 84 18 chr6 91653391 91653665 -97625889 + AluJb SINE Alu 1 292 -20 5690 258 130 49 chr6 91653665 91653734 -97625820 - L2 LINE L2 -1336 1977 1915 2237 96 3 0 chr6 91653734 91654026 -97625528 - AluSx SINE Alu -18 294 2 5690 258 130 49 chr6 91654026 91655036 -97624518 - L2 LINE L2 -1398 1915 562 25 51 0 0 chr6 91655298 91655337 -97624217 + AT_rich Low_complexity Low_complexity 1 39 0 1937 129 34 3 chr6 91656139 91656433 -97623121 + AluSx SINE Alu 1 303 -9 1014 43 7 22 chr6 91657291 91657430 -97622124 - L1PA5 LINE L1 -2 6467 6331 29718 106 41 26 chr6 91657889 91663372 -97616182 - L1PA5 LINE L1 -396 6073 381 381 290 27 42 chr6 91663371 91663716 -97615838 - L1MEc LINE L1 -4832 1448 1208 * 410 229 52 86 chr6 91663735 91663945 -97615609 - L1MEc LINE L1 -5269 1294 1092 2158 286 34 22 chr6 91664015 91664817 -97614737 - L1MEc LINE L1 -5455 1108 298 191 231 0 0 chr6 91665072 91665111 -97614443 - L2 LINE L2 -16 3297 3259 687 271 54 15 chr6 91665167 91665370 -97614184 + MLT1H LTR MaLR 1 211 -338 1625 113 0 5 chr6 91665372 91665593 -97613961 + AluSg SINE Alu 1 220 -90 2003 67 25 32 chr6 91665764 91666048 -97613506 - AluY SINE Alu 0 311 30 22 35 0 0 chr6 91666708 91666737 -97612817 + AT_rich Low_complexity Low_complexity 1 29 0 342 303 92 23 chr6 91667823 91668171 -97611383 - L1MC4a LINE L1 -321 5800 5549 27 49 0 0 chr6 91668234 91668275 -97611279 + AT_rich Low_complexity Low_complexity 1 41 0 289 283 22 51 chr6 91668435 91668573 -97610981 - MLT1J LTR MaLR -31 480 347 412 232 184 3 chr6 91668731 91668893 -97610661 - MLT1J LTR MaLR -281 187 10 23 33 0 0 chr6 91671112 91671142 -97608412 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr6 91671156 91671190 -97608364 + AT_rich Low_complexity Low_complexity 1 34 0 226 275 165 0 chr6 91671296 91671387 -97608167 + L2 LINE L2 1856 1961 -1353 * 412 336 8 8 chr6 91671386 91671517 -97608037 - L2 LINE L2 0 3272 3142 234 175 0 53 chr6 91672047 91672104 -97607450 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 262 302 93 35 chr6 91673064 91673236 -97606318 + MLT1L LTR MaLR 384 565 -50 609 179 8 34 chr6 91673292 91673409 -97606145 - AluJb SINE Alu -178 134 21 237 347 92 24 chr6 91673744 91673995 -97605559 - L2 LINE L2 -431 2883 2616 1547 140 7 53 chr6 91676242 91676675 -97602879 - LTR19A LTR ERV1 0 486 1 281 270 40 50 chr6 91676805 91676905 -97602649 + MIR SINE MIR 108 206 -56 292 108 0 31 chr6 91677059 91677124 -97602430 + (TA)n Simple_repeat Simple_repeat 1 63 0 438 206 46 106 chr6 91677159 91677377 -97602177 - L1ME2 LINE L1 -93 6071 5867 303 340 128 0 chr6 91677385 91677526 -97602028 - MIR SINE MIR -12 250 92 238 279 58 23 chr6 91677529 91677615 -97601939 - L2 LINE L2 0 3313 3225 861 319 126 7 chr6 91677771 91678225 -97601329 - L2 LINE L2 -351 2963 2456 449 266 86 52 chr6 91678255 91678428 -97601126 - L1MC5 LINE L1 -49 7912 7746 1082 78 0 0 chr6 91678428 91678569 -97600985 + L1PA16 LINE L1 6017 6157 -9 449 266 86 52 chr6 91678569 91678894 -97600660 - L1MC5 LINE L1 -215 7746 7397 261 306 68 58 chr6 91678938 91679144 -97600410 - L2 LINE L2 0 3313 3106 398 247 51 6 chr6 91679159 91679329 -97600225 - L1MC5 LINE L1 -547 7495 7271 900 214 6 13 chr6 91679956 91680274 -97599280 - LTR47A LTR ERVL -86 366 1 3110 155 73 74 chr6 91680280 91681098 -97598456 - LTR49-int LTR ERV1 -632 5699 5235 1831 128 36 4 chr6 91681098 91681372 -97598182 + AluSx SINE Alu 23 305 -7 3110 155 73 74 chr6 91681372 91681558 -97597996 - LTR49-int LTR ERV1 -1096 5235 5050 534 235 84 126 chr6 91681565 91681947 -97597607 - MLT1I LTR MaLR -37 372 39 22 0 0 0 chr6 91682185 91682207 -97597347 + AT_rich Low_complexity Low_complexity 1 22 0 1039 234 53 91 chr6 91682660 91683078 -97596476 - MLT1I LTR MaLR 0 409 8 2214 98 34 0 chr6 91685564 91685860 -97593694 + AluSq SINE Alu 2 307 -6 272 238 238 25 chr6 91686306 91686428 -97593126 + MER5A DNA MER1_type 39 186 -3 549 214 109 52 chr6 91688086 91688334 -97591220 + MIR SINE MIR 1 262 0 4205 173 16 7 chr6 91688498 91689262 -97590292 + L1MB1 LINE L1 5395 6165 -3 774 353 97 36 chr6 91690400 91691396 -97588158 + L2 LINE L2 1915 2971 -343 305 372 90 7 chr6 91691853 91691998 -97587556 + L2 LINE L2 3116 3272 0 360 350 96 0 chr6 91693345 91693502 -97586052 - MIR SINE MIR -19 243 72 2044 122 3 7 chr6 91693759 91694047 -97585507 - AluSg SINE Alu -23 287 1 215 358 0 75 chr6 91695069 91695242 -97584312 + L2 LINE L2 2326 2485 -829 1120 157 8 25 chr6 91696056 91696291 -97583263 + L1MA9 LINE L1 6082 6312 0 268 383 106 16 chr6 91697121 91697432 -97582122 - L2 LINE L2 -4 3268 2930 186 273 73 0 chr6 91697605 91697660 -97581894 + L2 LINE L2 1420 1478 -1836 483 18 0 0 chr6 91698814 91698870 -97580684 + (TTA)n Simple_repeat Simple_repeat 2 57 0 2091 121 0 4 chr6 91698873 91699154 -97580400 - AluSg SINE Alu -30 280 1 31 26 0 0 chr6 91699161 91699199 -97580355 + AT_rich Low_complexity Low_complexity 1 38 0 348 262 55 48 chr6 91699536 91699681 -97579873 - L1M4 LINE L1 -1101 5045 4900 546 288 102 15 chr6 91700136 91700684 -97578870 - L1MDa LINE L1 -2875 3665 3070 643 309 44 44 chr6 91700740 91701034 -97578520 + MLT1J2 LTR MaLR 1 294 -156 245 229 38 114 chr6 91701057 91701162 -97578392 + MLT1I LTR MaLR 313 409 0 376 308 67 29 chr6 91701162 91701676 -97577878 - L1MDa LINE L1 -3525 3015 2471 296 263 51 29 chr6 91701965 91702102 -97577452 + L1ME LINE L1 179 318 -5887 392 269 63 26 chr6 91702193 91702556 -97576998 + L1ME LINE L1 2043 2381 -3834 254 347 117 7 chr6 91702558 91702970 -97576584 - HAL1 LINE L1 -920 1587 1131 1518 145 16 0 chr6 91703074 91703316 -97576238 + L1PB1 LINE L1 5905 6150 -1 2136 119 3 7 chr6 91703321 91703624 -97575930 + AluSg SINE Alu 1 302 -8 1500 222 85 60 chr6 91703816 91704253 -97575301 + MLT1C LTR MaLR 20 467 0 315 214 92 76 chr6 91704255 91704386 -97575168 + MIR SINE MIR 127 259 -3 191 86 0 29 chr6 91704434 91704469 -97575085 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2278 105 0 10 chr6 91704471 91704784 -97574770 - AluSx SINE Alu 0 312 3 226 261 29 0 chr6 91704811 91704880 -97574674 + (CATA)n Simple_repeat Simple_repeat 4 74 0 400 286 32 16 chr6 91705973 91706162 -97573392 - L2 LINE L2 -124 3189 2998 188 313 12 38 chr6 91706161 91706241 -97573313 - L2 LINE L2 -994 2320 2243 * 336 298 25 50 chr6 91706565 91706686 -97572868 + MIR3 SINE MIR 89 206 -2 202 245 38 0 chr6 91707489 91707542 -97572012 + L2 LINE L2 3251 3305 -8 566 258 45 54 chr6 91708021 91708242 -97571312 - MIR SINE MIR -1 261 43 2534 7 0 0 chr6 91708367 91708641 -97570913 + AluYa5 SINE Alu 27 300 -11 24 0 0 0 chr6 91708872 91708896 -97570658 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 91708941 91708962 -97570592 + AT_rich Low_complexity Low_complexity 1 21 0 524 299 122 19 chr6 91710949 91711163 -97568391 + MIR SINE MIR 2 237 -25 23 33 0 0 chr6 91711233 91711263 -97568291 + AT_rich Low_complexity Low_complexity 1 30 0 1983 150 0 0 chr6 91711283 91711570 -97567984 - AluSx SINE Alu -15 297 11 1556 107 22 0 chr6 91711943 91712167 -97567387 - MER30 DNA MER1_type 0 230 2 2060 127 71 23 chr6 91712441 91712834 -97566720 - LTR7 LTR ERV1 -38 412 1 2473 72 53 13 chr6 91712834 91713211 -97566343 - HERVH LTR ERV1 0 7713 7322 1313 127 23 14 chr6 91713209 91713430 -97566124 - HERVH LTR ERV1 -1894 5819 5597 * 1171 152 0 1 chr6 91713427 91713788 -97565766 - HERVH LTR ERV1 -2564 5149 4744 * 906 154 0 7 chr6 91713778 91713927 -97565627 - HERVH LTR ERV1 -4075 3638 3491 * 805 169 20 0 chr6 91713916 91714064 -97565490 - HERVH LTR ERV1 -4423 3290 3140 * 16075 91 27 4 chr6 91714058 91716988 -97562566 - HERVH LTR ERV1 -4726 2987 1 702 104 0 26 chr6 91716990 91717105 -97562449 - LTR7 LTR ERV1 -2 448 337 2304 112 3 6 chr6 91717701 91718014 -97561540 + AluSx SINE Alu 1 312 0 209 296 0 0 chr6 91718482 91718536 -97561018 + L2 LINE L2 3258 3311 -2 1664 208 82 7 chr6 91718598 91719013 -97560541 + MLT2B2 LTR ERVL 1 554 0 23 0 0 0 chr6 91719616 91719639 -97559915 + AT_rich Low_complexity Low_complexity 1 23 0 1118 119 34 0 chr6 91719673 91719849 -97559705 + MER20 DNA MER1_type 38 219 0 3775 196 14 0 chr6 91720401 91721172 -97558382 + L1MC1 LINE L1 5301 6082 -251 1723 128 52 25 chr6 91721173 91721540 -97558014 + Tigger2 DNA MER2_type 1 377 -2341 243 0 0 0 chr6 91721541 91721568 -97557986 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 40214 40 22 1 chr6 91721569 91727583 -97551971 - L1PA3 LINE L1 -8 6147 3 1112 123 13 0 chr6 91728229 91728383 -97551171 - AluSg/x SINE Alu -17 295 140 3106 212 39 22 chr6 91728712 91730623 -97548931 + L1PB4 LINE L1 4196 6156 0 12341 155 44 7 chr6 91730623 91730634 -97548920 + Tigger2 DNA MER2_type 396 405 -2313 1600 209 7 7 chr6 91730634 91730931 -97548623 + AluJb SINE Alu 1 297 -15 12341 155 44 7 chr6 91730931 91733159 -97546395 + Tigger2 DNA MER2_type 405 2718 0 1048 165 133 0 chr6 91733159 91733377 -97546177 + L1MC1 LINE L1 6082 6328 -5 29 60 0 0 chr6 91733683 91733733 -97545821 + AT_rich Low_complexity Low_complexity 1 50 0 724 184 68 7 chr6 91733880 91734027 -97545527 - MER5A DNA MER1_type -33 156 1 319 283 58 8 chr6 91734071 91734191 -97545363 - MIR SINE MIR -71 191 66 287 119 0 0 chr6 91736253 91736295 -97543259 + MSTA LTR MaLR 382 423 -5 22 0 0 0 chr6 91736501 91736523 -97543031 + AT_rich Low_complexity Low_complexity 1 22 0 358 315 249 22 chr6 91737094 91737725 -97541829 + L2 LINE L2 2043 2816 -498 253 322 62 48 chr6 91737793 91737939 -97541615 + L2 LINE L2 2905 3052 -220 494 308 49 42 chr6 91737971 91738279 -97541275 - LTR16C LTR ERVL 0 491 182 490 357 11 11 chr6 91738451 91738734 -97540820 - MER90 LTR ERV1 -47 567 285 2519 103 100 5 chr6 91739079 91739488 -97540066 - LTR7 LTR ERV1 -2 448 1 2241 95 53 13 chr6 91739488 91739866 -97539688 - HERVH LTR ERV1 0 7713 7321 1110 136 73 5 chr6 91739863 91740069 -97539485 - HERVH LTR ERV1 -1894 5819 5600 * 7907 112 1 4 chr6 91740070 91741275 -97538279 - HERVH LTR ERV1 -2287 4242 3951 3256 109 0 6 chr6 91741294 91741799 -97537755 - HERVH LTR ERV1 -3720 3993 3492 840 141 13 0 chr6 91741789 91741938 -97537616 - HERVH LTR ERV1 -4423 3290 3140 * 13614 108 13 37 chr6 91741932 91744615 -97534939 - HERVH LTR ERV1 -4726 2987 62 5303 110 55 6 chr6 91744717 91745601 -97533953 - HERVH LTR ERV1 -6785 928 1 2697 82 95 7 chr6 91745603 91746015 -97533539 - LTR7 LTR ERV1 -2 448 1 809 259 78 89 chr6 91746201 91746726 -97532828 - LTR33 LTR ERVL -2 519 1 213 39 0 0 chr6 91746981 91747007 -97532547 + (A)n Simple_repeat Simple_repeat 1 26 0 218 336 28 19 chr6 91747913 91748020 -97531534 + MIR3 SINE MIR 85 192 -16 704 202 41 86 chr6 91748130 91748325 -97531229 - L1ME3 LINE L1 -4 6158 5977 2110 135 7 0 chr6 91748325 91748628 -97530926 - AluSx SINE Alu -7 305 1 704 202 41 86 chr6 91748628 91748699 -97530855 - L1ME3 LINE L1 -185 5977 5904 21 57 0 0 chr6 91749052 91749087 -97530467 + AT_rich Low_complexity Low_complexity 1 35 0 345 47 0 0 chr6 91749213 91749256 -97530298 + (TG)n Simple_repeat Simple_repeat 2 44 0 427 315 42 14 chr6 91749267 91749410 -97530144 + MIR SINE MIR 4 150 -112 413 225 33 67 chr6 91751259 91751379 -97528175 - L2 LINE L2 -1 3271 3156 584 296 231 9 chr6 91752232 91752553 -97527001 + LTR16A LTR ERVL 53 444 -6 23 54 0 0 chr6 91752677 91752714 -97526840 + AT_rich Low_complexity Low_complexity 1 37 0 637 313 108 4 chr6 91754635 91754903 -97524651 - L3 LINE CR1 -859 718 423 822 264 34 21 chr6 91754933 91755172 -97524382 + MIR SINE MIR 21 262 0 260 256 0 51 chr6 91755276 91755354 -97524200 + MIR SINE MIR 81 154 -108 327 146 22 11 chr6 91755458 91755547 -97524007 + (TA)n Simple_repeat Simple_repeat 2 91 0 322 192 0 101 chr6 91755693 91755792 -97523762 + MIR SINE MIR 66 154 -108 1989 155 0 0 chr6 91756393 91756690 -97522864 - AluSx SINE Alu -13 299 3 365 341 30 30 chr6 91759444 91759611 -97519943 + MIR3 SINE MIR 25 191 -17 269 343 75 0 chr6 91761043 91761177 -97518377 - MIR SINE MIR -58 204 61 190 267 0 0 chr6 91761233 91761278 -97518276 + L2 LINE L2 3262 3306 -7 417 20 0 0 chr6 91762155 91762205 -97517349 + (TG)n Simple_repeat Simple_repeat 2 51 0 1592 266 62 16 chr6 91762257 91762773 -97516781 - MER69 DNA AcHobo -685 541 2 272 310 16 16 chr6 91763073 91763202 -97516352 - L1ME LINE L1 -491 5630 5502 340 326 79 23 chr6 91763245 91763549 -97516005 - L1ME LINE L1 -1567 4579 4259 271 287 38 25 chr6 91763783 91763940 -97515614 + L1ME LINE L1 5668 5826 -295 293 289 11 0 chr6 91764020 91764110 -97515444 + (TG)n Simple_repeat Simple_repeat 2 92 0 293 260 119 27 chr6 91764257 91764356 -97515198 - HAL1b LINE L1 -83 1265 1176 1291 197 46 65 chr6 91764356 91764726 -97514828 + MLT1A1 LTR MaLR 1 363 -2 293 260 119 27 chr6 91764726 91764845 -97514709 - HAL1b LINE L1 -172 1176 1027 1727 161 76 14 chr6 91764859 91765214 -97514340 - MLT1B LTR MaLR -13 377 1 195 42 0 0 chr6 91765370 91765394 -97514160 + (TA)n Simple_repeat Simple_repeat 2 25 0 491 291 140 7 chr6 91765397 91765682 -97513872 - HAL1b LINE L1 -551 797 475 296 265 87 79 chr6 91765752 91766005 -97513549 + MER102a DNA MER1_type 74 328 -2 339 261 75 12 chr6 91766086 91766247 -97513307 - HAL1b LINE L1 -703 645 475 1934 166 24 25 chr6 91766270 91766801 -97512753 - LTR10E LTR ERV1 -43 590 1 482 266 69 30 chr6 91766813 91767117 -97512437 - HAL1b LINE L1 -887 461 146 21 0 0 0 chr6 91768873 91768894 -97510660 + AT_rich Low_complexity Low_complexity 1 21 0 4725 134 1 11 chr6 91769945 91770729 -97508825 + HERVH LTR ERV1 4374 5149 -2564 1052 146 73 5 chr6 91770730 91770936 -97508618 + HERVH LTR ERV1 5600 5819 -1894 * 2261 93 53 13 chr6 91770933 91771311 -97508243 + HERVH LTR ERV1 7321 7713 0 359 203 0 0 chr6 91771311 91771380 -97508174 + LTR7 LTR ERV1 1 69 -381 4690 113 18 9 chr6 91771495 91772270 -97507284 + HERVH LTR ERV1 2206 2987 -4726 802 154 13 0 chr6 91772264 91772413 -97507141 + HERVH LTR ERV1 3140 3290 -4423 * 3273 160 9 19 chr6 91772403 91773313 -97506241 + HERVH LTR ERV1 3492 4426 -2228 12902 102 13 14 chr6 91773567 91774281 -97505273 - HERVH LTR ERV1 -4717 2996 2283 2737 16 0 10 chr6 91774281 91774591 -97504963 + AluYa5 SINE Alu 1 307 -4 12902 102 13 14 chr6 91774591 91775942 -97503612 - HERVH LTR ERV1 -5430 2283 934 2299 229 64 30 chr6 91776057 91776795 -97502759 - L1ME1 LINE L1 -88 6078 5316 1154 264 61 68 chr6 91776824 91777366 -97502188 - MER68 LTR ERV1 -14 548 11 306 0 0 0 chr6 91777380 91777414 -97502140 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr6 91777935 91777963 -97501591 + AT_rich Low_complexity Low_complexity 1 28 0 210 150 0 0 chr6 91778205 91778245 -97501309 + (CAA)n Simple_repeat Simple_repeat 3 42 0 1900 159 41 33 chr6 91778384 91778933 -97500621 - MLT2A2 LTR ERVL 0 554 1 732 176 33 43 chr6 91779426 91779636 -97499918 - HERVH LTR ERV1 -6713 1000 793 2974 98 0 21 chr6 91779690 91780159 -97499395 - HERVH LTR ERV1 -7254 459 1 702 104 0 26 chr6 91780161 91780276 -97499278 - LTR7 LTR ERV1 -2 448 337 22 0 0 0 chr6 91780730 91780752 -97498802 + AT_rich Low_complexity Low_complexity 1 22 0 1570 165 7 33 chr6 91780874 91781146 -97498408 + AluSq SINE Alu 1 265 -48 12848 56 72 4 chr6 91781257 91783056 -97496498 - L1P LINE L1 -3960 2186 266 198 336 58 36 chr6 91785014 91785151 -97494403 + L2 LINE L2 2950 3089 -183 1242 121 72 5 chr6 91785430 91785558 -97493996 + Tigger3(Golem) DNA MER2_type 2790 2908 -120 1695 133 40 75 chr6 91785558 91785904 -97493650 + MER1B DNA MER1_type 2 335 -2 1242 121 72 5 chr6 91785904 91785998 -97493556 + Tigger3(Golem) DNA MER2_type 2908 3027 -1 916 277 16 4 chr6 91787248 91787497 -97492057 - MIR SINE MIR 0 262 11 265 245 92 20 chr6 91789272 91789370 -97490184 + L2 LINE L2 3162 3266 -47 228 146 36 0 chr6 91790369 91790424 -97489130 - L1MB7 LINE L1 -1 6183 6127 1266 39 0 0 chr6 91790427 91790583 -97488971 - L1PA2 LINE L1 -1 6154 5999 1955 104 7 11 chr6 91791782 91792079 -97487475 + AluSx SINE Alu 14 309 0 24 53 0 0 chr6 91792827 91792865 -97486689 + AT_rich Low_complexity Low_complexity 1 38 0 266 0 29 0 chr6 91793714 91793748 -97485806 + (TTG)n Simple_repeat Simple_repeat 2 36 0 310 220 16 60 chr6 91797800 91797982 -97481572 + (CAAA)n Simple_repeat Simple_repeat 3 176 0 292 227 7 78 chr6 91798009 91798163 -97481391 + A-rich Low_complexity Low_complexity 3 145 0 37928 42 27 3 chr6 91798266 91803359 -97476195 - L1P1 LINE L1 -682 5473 254 226 286 39 13 chr6 91803858 91803935 -97475619 - MIR3 SINE MIR -126 82 4 2021 134 139 16 chr6 91804790 91805171 -97474383 - MSTA LTR MaLR 0 428 1 488 252 0 43 chr6 91805370 91805485 -97474069 - L2 LINE L2 0 3313 3204 22 0 0 0 chr6 91805633 91805655 -97473899 + AT_rich Low_complexity Low_complexity 1 22 0 558 237 147 0 chr6 91806790 91806946 -97472608 + MER5A DNA MER1_type 11 189 0 207 161 0 0 chr6 91807307 91807338 -97472216 + polypurine Low_complexity Low_complexity 2 32 0 180 0 0 0 chr6 91807909 91807929 -97471625 + (A)n Simple_repeat Simple_repeat 1 20 0 226 271 17 0 chr6 91808832 91808891 -97470663 - L2 LINE L2 -102 3170 3111 1593 156 26 43 chr6 91809409 91809761 -97469793 + THE1C LTR MaLR 1 346 -29 207 235 0 118 chr6 91810187 91810272 -97469282 - MIR SINE MIR 0 262 188 1484 114 53 11 chr6 91810972 91811234 -97468320 - MER83B LTR ERV1 0 378 106 499 31 0 0 chr6 91811335 91811399 -97468155 - L1P LINE L1 -6081 65 2 * 3615 165 26 41 chr6 91811398 91812209 -97467345 - L1MB8 LINE L1 -40 6138 5340 1359 213 21 0 chr6 91812299 91812590 -97466964 + L1MB7 LINE L1 5878 6174 -10 231 281 0 0 chr6 91812958 91813015 -97466539 - L2 LINE L2 -3 3269 3213 2018 129 0 58 chr6 91813318 91813644 -97465910 + AluSx SINE Alu 1 307 -5 22 35 0 0 chr6 91813714 91813743 -97465811 + AT_rich Low_complexity Low_complexity 1 29 0 1687 247 62 30 chr6 91813902 91814879 -97464675 + L1MEc LINE L1 1598 2576 -3639 252 184 0 0 chr6 91814966 91815015 -97464539 - MLT1-int LTR MaLR -1322 49 1 267 218 0 0 chr6 91815024 91815079 -97464475 - MLT1-int LTR MaLR -621 750 696 409 268 42 49 chr6 91815191 91815333 -97464221 - MIR SINE MIR -119 143 3 887 287 60 36 chr6 91817127 91817660 -97461894 - MARNA DNA Mariner -8 578 33 182 254 51 17 chr6 91817844 91817903 -97461651 + MIR SINE MIR 81 141 -67 195 267 17 17 chr6 91818324 91818384 -97461170 + MIR SINE MIR 202 261 -1 247 268 202 47 chr6 91820101 91820314 -97459240 - MLT1L LTR MaLR -18 597 352 745 185 7 0 chr6 91820576 91820711 -97458843 + AluSq/x SINE Alu 1 136 -177 22 0 0 0 chr6 91820979 91821001 -97458553 + AT_rich Low_complexity Low_complexity 1 22 0 49 43 0 0 chr6 91821142 91821212 -97458342 + AT_rich Low_complexity Low_complexity 1 70 0 572 253 111 66 chr6 91821212 91821501 -97458053 - L2 LINE L2 -43 3270 2969 2020 182 10 10 chr6 91821689 91822080 -97457474 - L1PA16 LINE L1 -3 6163 5773 183 287 149 21 chr6 91822245 91822339 -97457215 - MIR SINE MIR -105 157 52 396 248 33 16 chr6 91822569 91822690 -97456864 + MER103 DNA DNA 1 123 -43 2163 114 65 3 chr6 91822851 91823192 -97456362 + THE1B LTR MaLR 1 362 -2 9654 126 13 33 chr6 91823194 91824802 -97454752 + THE1B-int LTR MaLR 1 1576 -4 2294 152 6 3 chr6 91824806 91825167 -97454387 + THE1B LTR MaLR 1 362 -2 205 314 95 9 chr6 91826614 91826719 -97452835 - MIR3 SINE MIR -3 205 92 936 184 108 0 chr6 91827064 91827249 -97452305 - MSTB LTR MaLR -85 341 137 3299 171 46 60 chr6 91828110 91828555 -97450999 - L1MB7 LINE L1 -16 6168 5737 1655 168 67 17 chr6 91828555 91828912 -97450642 - THE1C LTR MaLR 0 375 1 3299 171 46 60 chr6 91828912 91829255 -97450299 - L1MB7 LINE L1 -447 5737 5391 248 221 16 211 chr6 91832032 91832222 -97447332 + MIR SINE MIR 2 154 -108 402 342 86 43 chr6 91833620 91833898 -97445656 + L2 LINE L2 3024 3313 0 8736 112 7 48 chr6 91834146 91835628 -97443926 - L1PA10 LINE L1 -1416 4730 3310 6174 87 27 10 chr6 91835630 91837041 -97442513 + L1PA10 LINE L1 4739 6166 -2 15364 168 20 11 chr6 91837887 91842501 -97437053 - L1MA3 LINE L1 0 7724 3069 593 261 117 8 chr6 91844816 91845073 -97434481 - Charlie7 DNA MER1_type -479 2133 1849 233 289 157 8 chr6 91845413 91845534 -97434020 - MIR SINE MIR 0 262 124 258 289 23 47 chr6 91845544 91845672 -97433882 - Charlie7 DNA MER1_type -2486 126 2 237 352 28 0 chr6 91845688 91845796 -97433758 - L2 LINE L2 -662 2652 2542 208 216 0 0 chr6 91846489 91846526 -97433028 + T-rich Low_complexity Low_complexity 5 41 0 202 163 47 0 chr6 91846691 91846734 -97432820 + CT-rich Low_complexity Low_complexity 3 47 0 477 175 12 0 chr6 91849745 91849825 -97429729 - MER44D DNA MER2_type 0 609 529 470 205 0 0 chr6 91849827 91849905 -97429649 + Tigger5 DNA MER2_type 1 78 -2245 450 154 13 13 chr6 91849906 91849984 -97429570 - Tigger5 DNA MER2_type -4 2319 2242 358 262 0 0 chr6 91849972 91850056 -97429498 + Tigger5 DNA MER2_type 2240 2323 0 * 2378 183 40 2 chr6 91850056 91850510 -97429044 - MER44D DNA MER2_type -79 526 1 375 313 87 46 chr6 91851138 91851333 -97428221 - MIR SINE MIR -11 251 49 2146 165 36 33 chr6 91851977 91852525 -97427029 - MLT2A2 LTR ERVL 0 554 1 484 117 0 0 chr6 91852750 91852827 -97426727 - AluJ/FRAM SINE Alu -6 306 230 250 295 183 22 chr6 91852972 91853196 -97426358 + MIR SINE MIR 3 262 0 2252 70 7 0 chr6 91853488 91853787 -97425767 - AluY SINE Alu -10 301 1 450 178 287 0 chr6 91855095 91855196 -97424358 - FLAM_C SINE Alu -10 133 4 308 293 140 6 chr6 91855337 91855494 -97424060 + MIR SINE MIR 74 251 -11 246 182 0 0 chr6 91856320 91856364 -97423190 - U5 snRNA snRNA -72 44 1 24 32 0 0 chr6 91856819 91856850 -97422704 + AT_rich Low_complexity Low_complexity 1 31 0 343 282 75 58 chr6 91857227 91857415 -97422139 - L1MC5 LINE L1 -68 7893 7703 22 56 0 0 chr6 91857652 91857688 -97421866 + AT_rich Low_complexity Low_complexity 1 36 0 3038 44 11 5 chr6 91857976 91858404 -97421150 - L1P LINE L1 -729 5425 4996 4763 38 2 0 chr6 91858404 91858981 -97420573 + L1PA4 LINE L1 5576 6155 0 23 0 0 0 chr6 91859487 91859510 -97420044 + AT_rich Low_complexity Low_complexity 1 23 0 249 221 156 74 chr6 91860366 91860488 -97419066 - MIR3 SINE MIR -54 154 23 228 318 108 46 chr6 91860593 91860788 -97418766 - L2 LINE L2 -447 2867 2661 597 90 22 0 chr6 91861015 91861104 -97418450 + L1PA5 LINE L1 6060 6150 -4 228 248 49 21 chr6 91861718 91861787 -97417767 - MER91A DNA MER1_type -1 189 127 229 244 103 26 chr6 91861857 91861935 -97417619 - MER91A DNA MER1_type -101 95 12 5461 255 86 33 chr6 91863730 91864031 -97415523 - L1ME LINE L1 -390 6012 5729 1851 144 16 29 chr6 91864031 91864344 -97415210 - AluJb SINE Alu -3 309 1 5461 255 86 33 chr6 91864344 91866974 -97412580 - L1ME LINE L1 -673 5729 2932 1900 132 7 11 chr6 91866991 91867278 -97412276 - AluSx SINE Alu -14 298 13 26 50 0 0 chr6 91867535 91867575 -97411979 + AT_rich Low_complexity Low_complexity 1 40 0 564 101 0 0 chr6 91867743 91867822 -97411732 - MADE1 DNA Mariner -1 79 1 1315 251 66 5 chr6 91867975 91868354 -97411200 + L1MCc LINE L1 17 418 -6005 1590 290 73 40 chr6 91868443 91869185 -97410369 + L1MCc LINE L1 644 1409 -5014 763 201 36 81 chr6 91869428 91869736 -97409818 - LTR37B LTR ERV1 0 468 175 199 349 23 0 chr6 91870034 91870120 -97409434 - MIR SINE MIR -6 256 169 282 308 19 10 chr6 91870155 91870259 -97409295 - MIR SINE MIR -90 172 68 207 0 0 0 chr6 91870925 91870948 -97408606 + (TA)n Simple_repeat Simple_repeat 2 24 0 309 26 0 0 chr6 91871052 91871090 -97408464 + (TG)n Simple_repeat Simple_repeat 1 38 0 222 363 134 37 chr6 91871090 91871522 -97408032 + L2 LINE L2 328 801 -2513 2065 237 139 34 chr6 91871522 91871905 -97407649 - L1ME LINE L1 -4041 2343 2002 1211 205 62 42 chr6 91871905 91872242 -97407312 - MER2 DNA MER2_type 0 344 1 2065 237 139 34 chr6 91872242 91872998 -97406556 - L1ME LINE L1 -4382 2002 1084 2462 136 3 3 chr6 91873179 91873554 -97406000 + THE1C LTR MaLR 1 375 0 9814 129 42 3 chr6 91873554 91875075 -97404479 + THE1C-int LTR MaLR 1 1580 0 2400 134 3 6 chr6 91875075 91875440 -97404114 + THE1B LTR MaLR 1 364 0 185 377 13 50 chr6 91876032 91876191 -97403363 - L2 LINE L2 -250 3063 2911 2500 207 67 13 chr6 91876294 91876904 -97402650 - MER82 DNA MER2_type -1 652 10 2334 93 3 7 chr6 91877489 91877791 -97401763 - AluSq SINE Alu -10 303 3 14664 154 35 47 chr6 91878506 91881386 -97398168 + L1M1 LINE L1 15 2858 -4707 13858 178 29 18 chr6 91881381 91882344 -97397210 + L1M1 LINE L1 3231 4183 -3503 * 2185 118 3 3 chr6 91882344 91882641 -97396913 + AluY SINE Alu 1 297 -14 13858 178 29 18 chr6 91882641 91885356 -97394198 + L1M1 LINE L1 4183 6943 -743 6322 125 6 4 chr6 91885359 91886489 -97393065 + L1MA2 LINE L1 5172 6304 0 295 275 38 0 chr6 91886616 91886696 -97392858 - MIR SINE MIR -114 148 66 311 296 138 52 chr6 91886835 91887261 -97392293 - LTR67 LTR ERVL -5 552 90 291 286 33 0 chr6 91887450 91887541 -97392013 - ERVL LTR ERVL -2352 3412 3319 5791 112 10 1 chr6 91888225 91889155 -97390399 + L1PA15 LINE L1 5226 6163 -2 267 298 46 26 chr6 91889734 91889885 -97389669 - L1ME4a LINE L1 -26 6095 5942 253 331 104 21 chr6 91890550 91890697 -97388857 + MIR SINE MIR 3 163 -45 3627 189 42 70 chr6 91890909 91891906 -97387648 + LTR5 LTR ERVK 1 969 0 2867 121 9 0 chr6 91891975 91892422 -97387132 - L1PA16 LINE L1 -136 6030 5580 1422 244 8 0 chr6 91892424 91892801 -97386753 + L1P LINE L1 2164 2543 -3603 779 237 19 43 chr6 91893593 91893800 -97385754 - MIR SINE MIR -50 212 11 890 230 20 10 chr6 91894497 91894701 -97384853 - MER63A DNA MER1_type -4 206 1 22 0 0 0 chr6 91896823 91896845 -97382709 + AT_rich Low_complexity Low_complexity 1 22 0 180 49 0 73 chr6 91897140 91897181 -97382373 + (TA)n Simple_repeat Simple_repeat 1 38 0 306 220 22 33 chr6 91897183 91897274 -97382280 - L1MC4 LINE L1 -1339 6703 6614 216 91 23 45 chr6 91898764 91898808 -97380746 + (TTTTTA)n Simple_repeat Simple_repeat 2 44 0 401 318 40 0 chr6 91898969 91899117 -97380437 - MIR3 SINE MIR -25 183 30 225 0 0 0 chr6 91899363 91899388 -97380166 + (TG)n Simple_repeat Simple_repeat 2 26 0 183 80 0 0 chr6 91899390 91899415 -97380139 + (TGG)n Simple_repeat Simple_repeat 2 26 0 33275 100 20 9 chr6 91900850 91906915 -97372639 + L1PA6 LINE L1 26 6154 0 331 353 0 0 chr6 91907128 91907230 -97372324 + L2 LINE L2 2594 2695 -619 532 268 186 9 chr6 91907236 91907456 -97372098 - MIR SINE MIR -1 261 3 257 296 6 88 chr6 91908570 91908729 -97370825 - L2 LINE L2 0 3313 3168 27 29 0 0 chr6 91908733 91908767 -97370787 + AT_rich Low_complexity Low_complexity 1 34 0 919 282 143 19 chr6 91908780 91909385 -97370169 - L2 LINE L2 -94 3219 2530 186 245 235 10 chr6 91909587 91909685 -97369869 - L2 LINE L2 -15 3298 3179 21 36 0 0 chr6 91909969 91909997 -97369557 + AT_rich Low_complexity Low_complexity 1 28 0 1309 235 36 10 chr6 91910235 91910626 -97368928 - LTR52 LTR ERVL -8 413 13 438 192 61 10 chr6 91910943 91911042 -97368512 + MER5A DNA MER1_type 9 112 -77 432 202 61 10 chr6 91911288 91911387 -97368167 + MER5A DNA MER1_type 9 112 -77 201 39 0 0 chr6 91911748 91911774 -97367780 + (TG)n Simple_repeat Simple_repeat 1 26 0 1802 149 26 12 chr6 91911927 91913920 -97365634 + L1PB1 LINE L1 4057 6150 -1 186 43 0 0 chr6 91913960 91913983 -97365571 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1574 85 178 0 chr6 91914574 91914844 -97364710 - LTR7 LTR ERV1 -132 318 1 2305 93 48 13 chr6 91914844 91915221 -97364333 - HERVH LTR ERV1 0 7713 7324 1356 116 23 0 chr6 91915221 91915436 -97364118 - HERVH LTR ERV1 -1894 5819 5600 7378 125 3 3 chr6 91915437 91916592 -97362962 - HERVH LTR ERV1 -2564 5149 3995 1532 130 0 4 chr6 91916614 91916860 -97362694 - HERVH LTR ERV1 -3977 3736 3492 766 158 34 0 chr6 91916850 91916996 -97362558 - HERVH LTR ERV1 -4423 3290 3140 * 5193 112 2 24 chr6 91916975 91917854 -97361700 - HERVH LTR ERV1 -4718 2995 2136 * 8766 115 21 44 chr6 91917847 91919879 -97359675 - HERVH LTR ERV1 -5538 2175 1 2592 85 119 5 chr6 91919881 91920283 -97359271 - LTR7 LTR ERV1 -2 448 1 26 0 0 0 chr6 91920397 91920423 -97359131 + AT_rich Low_complexity Low_complexity 1 26 0 1678 121 0 4 chr6 91920863 91921102 -97358452 + AluSq SINE Alu 1 238 -75 22 0 0 0 chr6 91921343 91921365 -97358189 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 91921486 91921508 -97358046 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr6 91921822 91921860 -97357694 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 91921894 91921915 -97357639 + AT_rich Low_complexity Low_complexity 1 21 0 574 156 128 9 chr6 91921926 91922035 -97357519 - FLAM_C SINE Alu -21 122 1 198 0 0 0 chr6 91922333 91922355 -97357199 + (T)n Simple_repeat Simple_repeat 1 22 0 271 320 87 29 chr6 91923730 91923902 -97355652 - MER5A DNA MER1_type -7 182 1 489 282 80 28 chr6 91924022 91924235 -97355319 + MLT1J LTR MaLR 143 366 -145 1803 42 4 17 chr6 91924577 91924814 -97354740 + L1PA4 LINE L1 5922 6155 0 1515 139 75 16 chr6 91924928 91925180 -97354374 + AluSg SINE Alu 34 300 -10 276 30 0 0 chr6 91925635 91925668 -97353886 + (TA)n Simple_repeat Simple_repeat 2 34 0 441 215 149 72 chr6 91927698 91927893 -97351661 - MER63A DNA MER1_type 0 210 1 489 300 171 9 chr6 91928086 91928296 -97351258 + MIR SINE MIR 18 261 -1 333 303 28 0 chr6 91928346 91928455 -97351099 - MIR SINE MIR -86 176 65 303 197 14 14 chr6 91928624 91928695 -97350859 - MLT1J LTR MaLR -13 577 507 286 296 80 8 chr6 91928934 91929059 -97350495 - MLT1H LTR MaLR -415 134 1 1029 260 30 103 chr6 91929065 91929229 -97350325 - MLT1J LTR MaLR -49 462 288 1283 249 36 6 chr6 91929229 91929559 -97349995 - MER58B DNA MER1_type -1 340 1 1029 260 30 103 chr6 91929559 91929890 -97349664 - MLT1J LTR MaLR -223 288 3 314 353 89 13 chr6 91930700 91930935 -97348619 + LTR16C LTR ERVL 191 443 -48 3549 101 50 61 chr6 91930959 91931545 -97348009 - LTR8 LTR ERV1 -109 582 4 468 167 0 0 chr6 91931592 91931664 -97347890 - MER5A DNA MER1_type -117 72 1 213 178 0 0 chr6 91932129 91932174 -97347380 + CT-rich Low_complexity Low_complexity 2 46 0 194 268 70 28 chr6 91932295 91932366 -97347188 - L2 LINE L2 0 3272 3199 483 276 49 32 chr6 91932666 91932851 -97346703 + MIR SINE MIR 73 260 -2 1401 81 0 0 chr6 91934771 91934945 -97344609 - AluSc SINE Alu 0 309 136 21 36 0 0 chr6 91935972 91936000 -97343554 + AT_rich Low_complexity Low_complexity 1 28 0 500 330 84 39 chr6 91936116 91936425 -97343129 - L3 LINE CR1 -37 1540 1218 194 149 15 45 chr6 91936437 91936504 -97343050 + T-rich Low_complexity Low_complexity 4 68 0 30513 75 7 1 chr6 91937315 91942027 -97337527 + L1PA6 LINE L1 1204 5940 -214 853 190 20 25 chr6 91942188 91942388 -97337166 + Tigger7 DNA MER2_type 102 300 -2187 410 298 60 24 chr6 91942514 91942682 -97336872 - MIR SINE MIR -17 245 72 22 0 0 0 chr6 91944783 91944805 -97334749 + AT_rich Low_complexity Low_complexity 1 22 0 267 114 0 0 chr6 91945317 91945361 -97334193 + (TA)n Simple_repeat Simple_repeat 2 45 0 375 329 159 0 chr6 91945522 91945729 -97333825 - MIR SINE MIR 0 262 23 25 31 0 0 chr6 91946176 91946208 -97333346 + AT_rich Low_complexity Low_complexity 1 32 0 599 298 94 47 chr6 91946316 91946678 -97332876 - MLT1J1 LTR MaLR -2 444 66 410 278 11 107 chr6 91947214 91947401 -97332153 - MLT1I LTR MaLR -170 239 71 23 54 0 0 chr6 91947793 91947830 -97331724 + AT_rich Low_complexity Low_complexity 1 37 0 277 192 0 26 chr6 91947987 91948065 -97331489 + (TA)n Simple_repeat Simple_repeat 1 76 0 1745 163 10 20 chr6 91948150 91948445 -97331109 - AluSx SINE Alu -20 292 1 234 365 124 40 chr6 91949489 91949788 -97329766 - L2 LINE L2 -14 3258 2935 318 331 69 38 chr6 91954398 91954558 -97324996 + MIR SINE MIR 49 213 -49 244 283 36 94 chr6 91955082 91955220 -97324334 - L2 LINE L2 -28 3244 3115 476 323 81 0 chr6 91955674 91955860 -97323694 - MIR SINE MIR -30 232 32 330 198 154 11 chr6 91955914 91956005 -97323549 + MLT1K LTR MaLR 400 503 -85 6187 181 80 25 chr6 91956062 91956793 -97322761 + MER52A LTR ERV1 467 1295 -460 213 65 0 0 chr6 91956793 91956824 -97322730 + (CCCCCA)n Simple_repeat Simple_repeat 6 36 0 6187 181 80 25 chr6 91956824 91957313 -97322241 + MER52A LTR ERV1 1295 1755 0 21 0 0 0 chr6 91958048 91958069 -97321485 + AT_rich Low_complexity Low_complexity 1 21 0 276 215 0 167 chr6 91958155 91958299 -97321255 + MLT1K LTR MaLR 464 583 -5 397 229 0 64 chr6 91958509 91958618 -97320936 - L1ME4a LINE L1 -81 6040 5939 245 240 113 27 chr6 91958719 91958763 -97320791 - L1ME4a LINE L1 -209 5912 5873 1865 138 10 14 chr6 91958763 91959053 -97320501 - AluSx SINE Alu -13 299 11 245 240 113 27 chr6 91959053 91959158 -97320396 - L1ME4a LINE L1 -248 5873 5750 217 296 0 0 chr6 91959558 91959612 -97319942 + (TATG)n Simple_repeat Simple_repeat 4 57 0 435 279 76 42 chr6 91959617 91959941 -97319613 + L1ME4a LINE L1 5558 5870 -251 1334 219 39 0 chr6 91959941 91960220 -97319334 + AluJb SINE Alu 1 290 -22 435 279 76 42 chr6 91960220 91960303 -97319251 + L1ME4a LINE L1 5870 5949 -172 2219 116 0 0 chr6 91960303 91960595 -97318959 + AluSx SINE Alu 3 294 -18 435 279 76 42 chr6 91960595 91960727 -97318827 + L1ME4a LINE L1 5949 6116 -5 460 324 28 28 chr6 91962349 91962528 -97317026 + MIR3 SINE MIR 30 208 0 219 429 0 0 chr6 91962753 91962851 -97316703 + MIR SINE MIR 30 127 -81 432 229 95 9 chr6 91963109 91963214 -97316340 - L2 LINE L2 -8 3305 3192 2223 68 0 38 chr6 91963339 91963632 -97315922 - AluY SINE Alu -29 282 1 1080 47 0 27 chr6 91963827 91963975 -97315579 + L1PA7 LINE L1 6011 6154 0 734 250 6 44 chr6 91966253 91966433 -97313121 - MER5A DNA MER1_type 0 189 17 328 294 100 31 chr6 91966497 91966657 -97312897 + MIR SINE MIR 88 258 -4 21 57 0 0 chr6 91966823 91966858 -97312696 + AT_rich Low_complexity Low_complexity 1 35 0 186 244 0 0 chr6 91967825 91967866 -97311688 - L2 LINE L2 0 3313 3273 222 369 46 31 chr6 91967951 91968081 -97311473 - L2 LINE L2 0 3272 3141 369 331 113 34 chr6 91968090 91968531 -97311023 - L2 LINE L2 0 3272 2776 209 377 46 31 chr6 91968781 91968911 -97310643 - L2 LINE L2 0 3272 3141 26 0 0 0 chr6 91968920 91968946 -97310608 + AT_rich Low_complexity Low_complexity 1 26 0 765 315 89 43 chr6 91969058 91969641 -97309913 - L2 LINE L2 -209 3104 2493 21 36 0 0 chr6 91970271 91970299 -97309255 + AT_rich Low_complexity Low_complexity 1 28 0 398 179 51 0 chr6 91974563 91974641 -97304913 + MER81 DNA DNA 1 82 -32 1896 134 32 99 chr6 91974880 91975253 -97304301 - Tigger3(Golem) DNA MER2_type -1 3028 1 190 81 54 0 chr6 91975378 91975415 -97304139 + CT-rich Low_complexity Low_complexity 4 42 0 5595 167 27 7 chr6 91975746 91977769 -97301785 - L1MA5A LINE L1 0 6297 4241 3484 193 27 43 chr6 91978079 91978917 -97300637 + L1MB1 LINE L1 5341 6165 -3 22 35 0 0 chr6 91978963 91978992 -97300562 + AT_rich Low_complexity Low_complexity 1 29 0 233 354 124 6 chr6 91979712 91979890 -97299664 - MIR SINE MIR -6 256 58 1674 154 4 4 chr6 91979983 91980284 -97299270 + AluSx SINE Alu 23 323 0 34 0 0 0 chr6 91980441 91980475 -97299079 + AT_rich Low_complexity Low_complexity 1 34 0 1332 227 18 0 chr6 91980475 91980628 -97298926 - AluJo SINE Alu -27 285 123 207 0 0 0 chr6 91980628 91980651 -97298903 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1332 227 18 0 chr6 91980651 91980775 -97298779 - AluJo SINE Alu -189 123 3 26 50 0 0 chr6 91980888 91980928 -97298626 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr6 91981286 91981317 -97298237 + AT_rich Low_complexity Low_complexity 1 31 0 4539 63 8 0 chr6 91981592 91982191 -97297363 - L1PA3 LINE L1 -4816 1330 727 33060 35 3 0 chr6 91982192 91987010 -97292544 + L1PA3 LINE L1 1322 6155 0 608 316 52 82 chr6 91987391 91987913 -97291641 + L2 LINE L2 1543 2048 -1266 831 267 70 22 chr6 91987988 91988344 -97291210 + LTR37A LTR ERV1 54 426 0 775 328 67 66 chr6 91988422 91989335 -97290219 + L2 LINE L2 2153 3068 -245 302 243 81 0 chr6 91989707 91989781 -97289773 + L2 LINE L2 3230 3309 -4 3955 133 32 20 chr6 91990021 91990737 -97288817 - L1PA15 LINE L1 -3 6162 5438 7030 194 21 2 chr6 91990872 91992325 -97287229 - L1PA15 LINE L1 -757 5389 3910 14870 204 30 15 chr6 91992327 91996898 -97282656 - L1 LINE L1 -811 6295 1658 1484 229 15 8 chr6 91996933 91997267 -97282287 - L1 LINE L1 -6338 768 86 1033 200 5 10 chr6 91997264 91997469 -97282085 - L1 LINE L1 -6820 210 7 * 22 35 0 0 chr6 91998875 91998904 -97280650 + AT_rich Low_complexity Low_complexity 1 29 0 451 116 47 23 chr6 91999069 91999155 -97280399 + L1MA8 LINE L1 6198 6285 -6 8677 120 20 1 chr6 92001829 92003090 -97276464 + HSMAR1 DNA Mariner 3 1287 0 1093 244 116 15 chr6 92003162 92003568 -97275986 - L1ME3A LINE L1 -106 6064 5618 228 67 0 0 chr6 92003766 92003796 -97275758 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 423 356 44 9 chr6 92004154 92004379 -97275175 - MIR SINE MIR -10 252 20 21 36 0 0 chr6 92004867 92004895 -97274659 + AT_rich Low_complexity Low_complexity 1 28 0 222 365 58 10 chr6 92004968 92005072 -97274482 + L3b LINE CR1 1393 1501 -82 412 260 149 33 chr6 92005942 92006123 -97273431 - L2 LINE L2 0 3313 3112 387 287 33 33 chr6 92006130 92006280 -97273274 + MLT1G3 LTR MaLR 48 197 -333 23 33 0 0 chr6 92006865 92006895 -97272659 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 92008310 92008331 -97271223 + AT_rich Low_complexity Low_complexity 1 21 0 522 312 23 41 chr6 92008841 92009059 -97270495 - MIR SINE MIR 0 262 49 1717 171 3 7 chr6 92010625 92010930 -97268624 + AluSx SINE Alu 6 309 -3 23 33 0 0 chr6 92011018 92011048 -97268506 + AT_rich Low_complexity Low_complexity 1 30 0 1902 143 0 7 chr6 92011179 92011480 -97268074 - AluSx SINE Alu -12 300 2 368 230 135 45 chr6 92011962 92012162 -97267392 - HAL1b LINE L1 -228 1120 903 786 237 91 50 chr6 92012204 92012643 -97266911 - HAL1b LINE L1 -517 831 375 1262 233 32 35 chr6 92013018 92013365 -97266189 + MLT1A1 LTR MaLR 1 346 -19 572 61 0 12 chr6 92013381 92013463 -97266091 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 26 64 0 0 chr6 92013599 92013646 -97265908 + AT_rich Low_complexity Low_complexity 1 47 0 421 357 83 8 chr6 92014187 92014428 -97265126 - MIR SINE MIR -1 261 3 3748 141 36 5 chr6 92014717 92015383 -97264171 - L1MA5A LINE L1 -5 6292 5606 285 83 0 21 chr6 92015383 92015426 -97264128 + L1M1 LINE L1 4552 4593 -1553 1410 160 75 0 chr6 92015430 92015841 -97263713 + L1M1 LINE L1 5136 5568 -737 * 3316 221 73 8 chr6 92015833 92016795 -97262759 - L1 LINE L1 -2797 3991 2968 2702 111 24 24 chr6 92016849 92017309 -97262245 - L1PA4 LINE L1 0 6155 5696 6032 206 46 29 chr6 92017593 92019547 -97260007 - L1 LINE L1 -4540 2249 3 239 368 35 14 chr6 92019881 92020025 -97259529 + MIR SINE MIR 2 148 -114 243 61 0 0 chr6 92020047 92020080 -97259474 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 604 239 0 35 chr6 92020080 92020222 -97259332 - FRAM SINE Alu -31 145 9 837 137 0 8 chr6 92021182 92021313 -97258241 - AluSg/x SINE Alu -8 301 172 239 270 16 0 chr6 92022384 92022447 -97257107 + L1ME LINE L1 5522 5585 -536 1910 135 17 7 chr6 92023147 92023436 -97256118 + AluSx SINE Alu 1 292 -20 772 244 93 0 chr6 92024662 92024867 -97254687 - MER58A DNA MER1_type 0 224 1 189 333 15 15 chr6 92025679 92025745 -97253809 - L3 LINE CR1 -7 1570 1505 356 221 71 35 chr6 92026304 92026417 -97253137 + MER97b DNA MER1_type? 46 162 -891 739 119 30 30 chr6 92026538 92026672 -97252882 + MER58 DNA MER1_type 2286 2419 -1 889 218 50 79 chr6 92026678 92026771 -97252783 + MER97c DNA MER1_type? 209 303 -787 2074 115 7 0 chr6 92026771 92027050 -97252504 - AluSx SINE Alu -31 281 1 889 218 50 79 chr6 92027050 92027336 -97252218 + MER97c DNA MER1_type? 303 577 -513 625 203 162 76 chr6 92028120 92028514 -97251040 + MSTC LTR MaLR 1 428 0 2751 104 3 0 chr6 92028587 92028973 -97250581 + L1PA11 LINE L1 5535 5921 -253 2112 35 0 0 chr6 92028982 92029237 -97250317 - L1PA4 LINE L1 0 6155 5901 16355 72 8 0 chr6 92029239 92031356 -97248198 + L1P LINE L1 2 2135 -4011 1897 157 131 11 chr6 92031581 92031963 -97247591 + MSTA LTR MaLR 1 428 0 22289 38 34 1 chr6 92032320 92035517 -97244037 - L1PA2 LINE L1 -336 5819 2515 2979 44 0 0 chr6 92035517 92035881 -97243673 + L1PA2 LINE L1 5791 6155 0 452 196 126 42 chr6 92035921 92036064 -97243490 + L1MDa LINE L1 1964 2118 -4422 186 43 0 0 chr6 92036064 92036087 -97243467 + (A)n Simple_repeat Simple_repeat 1 23 0 772 123 0 0 chr6 92036087 92036201 -97243353 - L1P LINE L1 -1508 4638 4525 6885 67 2 3 chr6 92036201 92037109 -97242445 + L1PA8 LINE L1 5258 6170 -2 22 70 0 0 chr6 92037432 92037475 -97242079 + AT_rich Low_complexity Low_complexity 1 43 0 301 265 13 66 chr6 92038416 92038567 -97240987 - MER97c DNA MER1_type? -17 1073 894 215 132 38 19 chr6 92038568 92038621 -97240933 + (TA)n Simple_repeat Simple_repeat 1 54 0 22 0 0 0 chr6 92038632 92038654 -97240900 + AT_rich Low_complexity Low_complexity 1 22 0 1215 129 116 33 chr6 92038685 92038926 -97240628 - L1PA11 LINE L1 -16 6158 5898 * 7326 32 0 0 chr6 92038903 92039775 -97239779 - L1P1 LINE L1 -1366 4780 3909 5272 13 0 0 chr6 92039775 92040759 -97238795 + L1P1 LINE L1 4779 5762 -393 3168 118 23 8 chr6 92040755 92041270 -97238284 + L1P LINE L1 4628 5150 -996 * 288 77 0 0 chr6 92041550 92041589 -97237965 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 2744 233 138 43 chr6 92042947 92042960 -97236594 + L1MC4a LINE L1 6607 6617 -1191 1089 136 0 0 chr6 92042960 92043137 -97236417 + (TA)n Simple_repeat Simple_repeat 1 177 0 2744 233 138 43 chr6 92043137 92043489 -97236065 + L1MC4a LINE L1 6617 6934 -874 213 39 0 0 chr6 92043489 92043515 -97236039 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 2744 233 138 43 chr6 92043515 92044246 -97235308 + L1MC4a LINE L1 6934 7808 0 501 312 99 16 chr6 92044928 92045181 -97234373 + Charlie8 DNA MER1_type 2 275 -2142 312 48 0 0 chr6 92045322 92045364 -97234190 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 36 0 0 chr6 92045940 92045968 -97233586 + AT_rich Low_complexity Low_complexity 1 28 0 630 75 0 0 chr6 92045991 92046107 -97233447 + L1PA3 LINE L1 6052 6167 0 1894 205 68 46 chr6 92047293 92047356 -97232198 - MLT2B2 LTR ERVL 0 515 455 462 88 0 0 chr6 92047356 92047424 -97232130 + (TA)n Simple_repeat Simple_repeat 1 68 0 1894 205 68 46 chr6 92047424 92047862 -97231692 - MLT2B2 LTR ERVL -60 455 3 11327 236 58 51 chr6 92047864 92050771 -97228783 - HERVL-B2 LTR ERVL 0 5654 2727 21 57 0 0 chr6 92051705 92051740 -97227814 + AT_rich Low_complexity Low_complexity 1 35 0 5078 174 70 16 chr6 92052032 92053200 -97226354 - L1MC2 LINE L1 -15 6329 5104 219 283 80 80 chr6 92055002 92055140 -97224414 - MIR3 SINE MIR -49 159 22 558 59 0 0 chr6 92055486 92055554 -97224000 + L1PA3 LINE L1 22 89 -6057 15971 38 28 1 chr6 92055554 92060868 -97218686 + L1PA3 LINE L1 614 6150 -5 203 282 263 6 chr6 92060884 92061040 -97218514 + MIR SINE MIR 57 252 -10 1906 292 134 20 chr6 92061076 92061994 -97217560 + L2 LINE L2 2025 3067 -246 1461 107 0 0 chr6 92062812 92063028 -97216526 - L1PA14 LINE L1 -2 6159 5944 * 7272 43 9 0 chr6 92063027 92064201 -97215353 - L1PA4 LINE L1 -2 6153 4976 6319 32 0 0 chr6 92064201 92064959 -97214595 + L1PA4 LINE L1 4210 4967 -1179 1214 197 5 0 chr6 92064956 92065179 -97214375 + L1P LINE L1 4093 4316 -1830 * 890 143 0 0 chr6 92065226 92065359 -97214195 - AluSg/x SINE Alu -7 305 173 21 0 0 0 chr6 92065477 92065498 -97214056 + AT_rich Low_complexity Low_complexity 1 21 0 340 193 102 0 chr6 92065643 92065731 -97213823 + L1MA5 LINE L1 6071 6167 -133 415 321 43 11 chr6 92065775 92065959 -97213595 + L2 LINE L2 2070 2259 -1055 183 186 0 0 chr6 92066197 92066240 -97213314 + (TA)n Simple_repeat Simple_repeat 2 44 0 1664 200 82 16 chr6 92066347 92066468 -97213086 - L1MA9 LINE L1 -26 6286 6174 207 0 0 0 chr6 92066468 92066491 -97213063 + (TG)n Simple_repeat Simple_repeat 2 24 0 1664 200 82 16 chr6 92066491 92066794 -97212760 - L1MA9 LINE L1 -138 6174 5834 400 340 72 5 chr6 92066804 92066998 -97212556 + L2 LINE L2 2447 2653 -661 180 0 0 0 chr6 92067032 92067052 -97212502 + (TC)n Simple_repeat Simple_repeat 1 20 0 299 362 39 8 chr6 92067578 92067705 -97211849 - MIR3 SINE MIR -70 138 8 461 363 81 38 chr6 92068413 92068757 -97210797 - L2 LINE L2 -4 3268 2910 2213 114 0 0 chr6 92070054 92070344 -97209210 - AluSx SINE Alu -12 300 11 228 317 150 33 chr6 92070559 92070739 -97208815 + MIR SINE MIR 6 206 -56 26 0 0 0 chr6 92070826 92070852 -97208702 + AT_rich Low_complexity Low_complexity 1 26 0 274 333 55 24 chr6 92071418 92071583 -97207971 - LTR67 LTR ERVL -46 511 342 612 112 0 28 chr6 92071968 92072075 -97207479 - L1MB2 LINE L1 0 6171 6068 264 146 21 0 chr6 92072165 92072213 -97207341 - MLT1K LTR MaLR -17 571 523 261 351 86 22 chr6 92072307 92072529 -97207025 - MLT1K LTR MaLR -160 428 193 302 277 162 43 chr6 92073181 92073416 -97206138 + L1M4 LINE L1 1188 1450 -4691 1013 256 113 88 chr6 92073618 92074141 -97205413 - MLT1H LTR MaLR -2 547 12 231 257 99 53 chr6 92074165 92074317 -97205237 + HAL1 LINE L1 1370 1528 -979 408 300 82 44 chr6 92074868 92075567 -97203987 + L1M4 LINE L1 3320 4044 -2166 215 213 8 79 chr6 92075578 92075705 -97203849 + A-rich Low_complexity Low_complexity 2 119 0 1910 60 48 0 chr6 92075705 92075734 -97203820 - L1PA8A LINE L1 -409 5722 5696 390 21 0 0 chr6 92075734 92075781 -97203773 + (TG)n Simple_repeat Simple_repeat 2 48 0 1910 60 48 0 chr6 92075781 92076002 -97203552 - L1PA8A LINE L1 -435 5696 5460 308 75 19 19 chr6 92076002 92076052 -97203502 + L1PA8 LINE L1 6119 6171 -1 681 211 176 58 chr6 92076546 92076859 -97202695 + MER69 DNA AcHobo 2177 2526 0 207 69 0 0 chr6 92076952 92076981 -97202573 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 85 0 0 chr6 92077805 92077864 -97201690 + AT_rich Low_complexity Low_complexity 1 59 0 1471 315 62 28 chr6 92078359 92079059 -97200495 + L1M3a LINE L1 52 769 -5186 1704 236 55 60 chr6 92079081 92080554 -97199000 + L1M3a LINE L1 1437 2946 -4161 2117 242 47 25 chr6 92080662 92081614 -97197940 + L1M2 LINE L1 1511 2490 -4547 2517 272 22 14 chr6 92081626 92082401 -97197153 + L1M2 LINE L1 3106 3886 -3220 42082 42 21 2 chr6 92082418 92088455 -97191099 + L1PA3 LINE L1 1 6154 -1 10349 195 25 16 chr6 92088464 92088821 -97190733 + L1M2 LINE L1 3915 4267 -2966 1662 180 3 7 chr6 92088821 92089115 -97190439 + AluJb SINE Alu 1 293 -19 10349 195 25 16 chr6 92089115 92091310 -97188244 + L1M2 LINE L1 4267 6490 -743 28 29 0 0 chr6 92091392 92091427 -97188127 + AT_rich Low_complexity Low_complexity 1 35 0 2415 218 101 62 chr6 92091539 92091713 -97187841 + L1ME2 LINE L1 5028 5194 -970 2241 53 0 0 chr6 92091713 92091995 -97187559 - L1PA5 LINE L1 -2 6152 5871 2415 218 101 62 chr6 92091995 92092919 -97186635 + L1ME2 LINE L1 5194 6155 -9 574 165 0 0 chr6 92093794 92093891 -97185663 + AluJb SINE Alu 137 233 -79 221 305 0 0 chr6 92093967 92094049 -97185505 + A-rich Low_complexity Low_complexity 1 82 0 2197 71 0 0 chr6 92096437 92096747 -97182807 - AluY SINE Alu 0 310 1 614 358 78 0 chr6 92097377 92097609 -97181945 - MIR SINE MIR 0 262 13 1779 179 48 15 chr6 92097958 92098687 -97180867 + L1MCa LINE L1 1146 1994 -4432 12396 171 47 24 chr6 92099079 92102797 -97176757 + L1MA6 LINE L1 2501 6300 0 21 0 0 0 chr6 92102808 92102829 -97176725 + AT_rich Low_complexity Low_complexity 1 21 0 7522 214 76 11 chr6 92102969 92103642 -97175912 - L1 LINE L1 -1749 4397 3769 198 0 0 0 chr6 92103642 92103664 -97175890 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 7522 214 76 11 chr6 92103664 92104878 -97174676 - L1 LINE L1 -2377 3769 2387 5733 154 20 7 chr6 92104879 92106191 -97173363 + L1PB1 LINE L1 4456 5796 -355 545 28 14 0 chr6 92106191 92106262 -97173292 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 5733 154 20 7 chr6 92106262 92106622 -97172932 + L1PB1 LINE L1 5796 6150 -1 470 45 0 15 chr6 92107512 92107578 -97171976 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 27 0 0 0 chr6 92107639 92107666 -97171888 + AT_rich Low_complexity Low_complexity 1 27 0 251 341 49 0 chr6 92108450 92108532 -97171022 - MIR SINE MIR -108 154 69 266 323 128 12 chr6 92108649 92108813 -97170741 - MIR SINE MIR -36 226 44 299 275 7 0 chr6 92109815 92109957 -97169597 + (TA)n Simple_repeat Simple_repeat 2 144 0 6745 75 16 2 chr6 92110652 92112209 -97167345 - L1PA8 LINE L1 0 6172 4603 2834 68 172 128 chr6 92112209 92112772 -97166782 - LTR12 LTR ERV1 0 714 127 1436 101 0 0 chr6 92112772 92112981 -97166573 - L1PA8 LINE L1 -1562 4584 4376 867 175 143 0 chr6 92113218 92113470 -97166084 - L1MA8 LINE L1 -10 6281 5994 1328 211 19 36 chr6 92113540 92113677 -97165877 + AluJo SINE Alu 1 139 -173 351 78 0 0 chr6 92113677 92113728 -97165826 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1328 211 19 36 chr6 92113728 92113898 -97165656 + AluJo SINE Alu 139 303 -9 413 325 69 13 chr6 92114551 92114782 -97164772 - MIR SINE MIR -6 256 13 3540 163 8 5 chr6 92114796 92115838 -97163716 - L1MA5A LINE L1 -449 5848 4801 2566 138 28 0 chr6 92115843 92116272 -97163282 + L1MA5A LINE L1 5854 6294 -3 430 310 56 42 chr6 92116444 92116660 -97162894 + MIR SINE MIR 18 236 -26 295 322 25 8 chr6 92116725 92116843 -97162711 + L2 LINE L2 3153 3272 0 25 0 0 0 chr6 92118896 92118921 -97160633 + AT_rich Low_complexity Low_complexity 1 25 0 810 281 25 0 chr6 92119152 92119348 -97160206 + MER58A DNA MER1_type 3 203 -21 261 0 0 0 chr6 92119593 92119622 -97159932 + (TA)n Simple_repeat Simple_repeat 2 30 0 2199 212 45 37 chr6 92119675 92120303 -97159251 - L1 LINE L1 -959 5187 4555 25 0 0 0 chr6 92120332 92120357 -97159197 + AT_rich Low_complexity Low_complexity 1 25 0 2954 184 23 23 chr6 92120628 92120712 -97158842 - L1MB7 LINE L1 -41 6143 6060 1659 237 61 47 chr6 92120712 92121303 -97158251 - L1MD1 LINE L1 -171 6071 5473 447 325 64 12 chr6 92121814 92122063 -97157491 + HAL1 LINE L1 1613 1874 -633 1695 217 54 76 chr6 92122156 92122751 -97156803 - MER119 DNA MER1_type -1 582 1 22 35 0 0 chr6 92123302 92123331 -97156223 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr6 92123847 92123890 -97155664 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr6 92124015 92124047 -97155507 + AT_rich Low_complexity Low_complexity 1 32 0 844 121 29 17 chr6 92126029 92126202 -97153352 + GA-rich Low_complexity Low_complexity 2 176 0 236 354 21 0 chr6 92126772 92126868 -97152686 - L2 LINE L2 -15 3298 3201 22 35 0 0 chr6 92126963 92126992 -97152562 + AT_rich Low_complexity Low_complexity 1 29 0 566 211 12 62 chr6 92127418 92127579 -97151975 - L1MD1 LINE L1 -397 5845 5693 361 316 84 50 chr6 92127764 92128084 -97151470 - L1MD1 LINE L1 -1196 4950 4620 5925 192 57 21 chr6 92128317 92130471 -97149083 - L1MA8 LINE L1 -5 6286 4053 496 288 138 52 chr6 92130508 92131224 -97148330 - L1MD1 LINE L1 -1824 4322 3545 22 0 0 0 chr6 92131577 92131599 -97147955 + AT_rich Low_complexity Low_complexity 1 22 0 4510 308 73 34 chr6 92131743 92133640 -97145914 - L2 LINE L2 -992 2322 353 763 164 0 15 chr6 92133644 92133778 -97145776 - AluSq/x SINE Alu -181 132 1 301 311 30 55 chr6 92133780 92133922 -97145632 - L2 LINE L2 -2945 369 225 1851 170 111 13 chr6 92133922 92134310 -97145244 - MSTA LTR MaLR 0 428 3 8225 154 30 37 chr6 92134312 92135902 -97143652 - MSTA-int LTR MaLR 0 1580 3 1833 169 125 13 chr6 92135904 92136289 -97143265 - MSTA LTR MaLR 0 428 1 301 311 30 55 chr6 92136289 92136304 -97143250 - L2 LINE L2 -3091 223 210 1671 165 49 35 chr6 92137662 92138032 -97141522 - THE1C LTR MaLR 0 375 1 189 300 0 88 chr6 92138125 92138205 -97141349 - MIR SINE MIR -95 113 41 183 80 0 0 chr6 92138818 92138843 -97140711 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 314 296 66 25 chr6 92139432 92139611 -97139943 + MIR SINE MIR 70 257 -5 1529 157 103 57 chr6 92140060 92140429 -97139125 + MLT1B LTR MaLR 1 386 -4 7326 39 3 2 chr6 92141113 92142043 -97137511 + L1PA5 LINE L1 5223 6153 -1 638 143 67 8 chr6 92142070 92142189 -97137365 - L1MB2 LINE L1 -136 6035 5910 33 0 0 0 chr6 92142292 92142325 -97137229 + AT_rich Low_complexity Low_complexity 1 33 0 193 233 12 12 chr6 92142488 92142574 -97136980 + CT-rich Low_complexity Low_complexity 2 87 0 27 49 0 0 chr6 92142887 92142928 -97136626 + AT_rich Low_complexity Low_complexity 1 41 0 393 272 103 15 chr6 92143483 92143619 -97135935 - MIR SINE MIR -37 225 78 28 48 0 0 chr6 92143715 92143757 -97135797 + AT_rich Low_complexity Low_complexity 1 42 0 3156 248 94 24 chr6 92145112 92146468 -97133086 - L1MEc LINE L1 -946 5269 3818 6096 30 0 0 chr6 92146471 92147184 -97132370 - L1PA3 LINE L1 0 6155 5443 7816 26 0 0 chr6 92147184 92148122 -97131432 + L1P LINE L1 4466 5403 -743 2648 281 70 53 chr6 92148125 92148846 -97130708 - L1MEc LINE L1 -2377 3838 3130 2217 75 41 0 chr6 92148846 92149139 -97130415 - AluY SINE Alu -6 305 1 2648 281 70 53 chr6 92149139 92150581 -97128973 - L1MEc LINE L1 -3085 3130 36 361 108 62 0 chr6 92150941 92151006 -97128548 - MADE1 DNA Mariner 0 80 12 312 27 0 0 chr6 92152276 92152313 -97127241 + (CA)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr6 92152462 92152483 -97127071 + AT_rich Low_complexity Low_complexity 1 21 0 202 356 59 0 chr6 92152724 92152825 -97126729 - L2 LINE L2 0 3272 3166 361 309 101 20 chr6 92153180 92153329 -97126225 - MIR SINE MIR -70 192 32 341 264 136 7 chr6 92153395 92153550 -97126004 + MER5B DNA MER1_type 1 175 -3 1816 143 43 54 chr6 92153629 92153999 -97125555 - MER47A DNA MER2_type 0 366 1 23 0 0 0 chr6 92154944 92154967 -97124587 + AT_rich Low_complexity Low_complexity 1 23 0 1751 201 34 26 chr6 92156202 92156581 -97122973 + MLT1B LTR MaLR 1 382 -8 846 371 64 40 chr6 92156732 92157240 -97122314 + L2 LINE L2 2129 2666 -648 2198 130 0 0 chr6 92157240 92157539 -97122015 + AluSg SINE Alu 1 299 -11 846 371 64 40 chr6 92157539 92157859 -97121695 + L2 LINE L2 2666 2977 -337 336 306 236 26 chr6 92158785 92159014 -97120540 - L3 LINE CR1 -1 1576 1300 22 0 0 0 chr6 92159167 92159189 -97120365 + AT_rich Low_complexity Low_complexity 1 22 0 305 409 23 0 chr6 92159300 92159471 -97120083 - L3 LINE CR1 -350 1227 1053 235 301 82 20 chr6 92160288 92160434 -97119120 + LTR68 LTR ERV1 9 163 -577 1880 154 0 11 chr6 92161261 92161547 -97118007 - AluJb SINE Alu -24 288 6 304 182 0 0 chr6 92161556 92161611 -97117943 + L1MB8 LINE L1 6115 6169 -9 207 100 0 0 chr6 92161651 92161681 -97117873 + (T)n Simple_repeat Simple_repeat 1 30 0 10322 185 16 8 chr6 92161713 92162082 -97117472 - L1PB1 LINE L1 -1 6150 5785 252 0 0 0 chr6 92162082 92162110 -97117444 + (TA)n Simple_repeat Simple_repeat 1 28 0 10322 185 16 8 chr6 92162110 92164978 -97114576 - L1PB1 LINE L1 -366 5785 2891 492 272 150 6 chr6 92165123 92165303 -97114251 - MIR SINE MIR -13 249 44 832 166 57 10 chr6 92165459 92165652 -97113902 - L1MC3 LINE L1 -18 7767 7566 204 125 0 0 chr6 92165735 92165767 -97113787 + (TA)n Simple_repeat Simple_repeat 1 32 0 223 295 77 0 chr6 92166764 92166842 -97112712 + L2 LINE L2 925 1008 -2306 1468 206 28 68 chr6 92166845 92167239 -97112315 + MLT1B LTR MaLR 3 380 -10 1207 307 114 47 chr6 92167240 92167664 -97111890 + L2 LINE L2 991 1484 -1830 2310 87 0 0 chr6 92167664 92167963 -97111591 + AluY SINE Alu 1 299 -12 1207 307 114 47 chr6 92167963 92168257 -97111297 + L2 LINE L2 1484 1757 -1557 289 337 107 5 chr6 92168547 92168743 -97110811 + L1MC/D LINE L1 5533 5748 -373 294 29 0 0 chr6 92169123 92169158 -97110396 + (TG)n Simple_repeat Simple_repeat 2 36 0 996 229 5 0 chr6 92169444 92169649 -97109905 + L1MA6 LINE L1 13 218 -7347 364 169 0 0 chr6 92169648 92169719 -97109835 - L1 LINE L1 -2364 3782 3712 * 4833 191 64 12 chr6 92170975 92172155 -97107399 + L1MA6 LINE L1 4401 5642 -1923 301 74 19 19 chr6 92172158 92172212 -97107342 + (TA)n Simple_repeat Simple_repeat 2 55 0 28 29 0 0 chr6 92172453 92172488 -97107066 + AT_rich Low_complexity Low_complexity 1 35 0 393 287 6 6 chr6 92172563 92172727 -97106827 + (TA)n Simple_repeat Simple_repeat 1 164 0 4297 183 39 8 chr6 92172747 92173663 -97105891 + L1MA6 LINE L1 5636 6580 -985 3208 186 30 12 chr6 92173663 92174348 -97105206 + L1MA6 LINE L1 7010 7714 -5 25 65 0 0 chr6 92175600 92175646 -97103908 + AT_rich Low_complexity Low_complexity 1 46 0 27 29 0 0 chr6 92177017 92177051 -97102503 + AT_rich Low_complexity Low_complexity 1 34 0 644 325 47 25 chr6 92177357 92177634 -97101920 - MLT1J LTR MaLR 0 511 229 1247 236 58 16 chr6 92177652 92178016 -97101538 - L1ME2 LINE L1 -9 6155 5777 234 345 103 36 chr6 92178034 92178228 -97101326 - L1MEc LINE L1 -5919 477 271 554 318 31 18 chr6 92178470 92178693 -97100861 - MLT1J LTR MaLR -275 236 11 12254 31 1 0 chr6 92178877 92180346 -97099208 - L1PA4 LINE L1 -905 5241 3771 7206 42 1 7 chr6 92180352 92181258 -97098296 + L1PA4 LINE L1 5255 6155 0 338 327 80 35 chr6 92181298 92181637 -97097917 + L1ME LINE L1 5473 5826 -344 661 238 33 7 chr6 92183313 92183464 -97096090 + MER5B DNA MER1_type 24 178 0 185 314 0 29 chr6 92183610 92183680 -97095874 + MER5B DNA MER1_type 111 178 0 1729 155 44 25 chr6 92183997 92184364 -97095190 - THE1C LTR MaLR 0 375 2 222 342 0 0 chr6 92187010 92187089 -97092465 - L2 LINE L2 -508 2806 2728 22 70 0 0 chr6 92188117 92188160 -97091394 + AT_rich Low_complexity Low_complexity 1 43 0 517 278 56 40 chr6 92188186 92188384 -97091170 - MIR SINE MIR -1 261 61 1176 90 0 18 chr6 92188485 92188651 -97090903 - AluY SINE Alu 0 311 149 186 336 87 19 chr6 92188703 92188807 -97090747 + L3 LINE CR1 673 783 -794 680 47 0 0 chr6 92189000 92189086 -97090468 + AluSg/x SINE Alu 214 299 -13 246 311 161 19 chr6 92189624 92189785 -97089769 + L3 LINE CR1 1011 1194 -383 212 276 142 31 chr6 92189821 92189948 -97089606 + L3 LINE CR1 1292 1432 -145 1897 164 69 21 chr6 92190287 92190665 -97088889 - MER61B LTR ERV1 -29 396 1 20158 111 38 29 chr6 92190665 92191217 -97088337 - MER61B-int LTR ERV1 0 5217 4671 2358 112 34 11 chr6 92191217 92191573 -97087981 + THE1B LTR MaLR 1 364 0 20158 111 38 29 chr6 92191573 92194238 -97085316 - MER61B-int LTR ERV1 -546 4671 1972 1873 92 14 25 chr6 92194217 92194380 -97085174 - MER61B-int LTR ERV1 -3577 1640 1480 * 2169 128 0 6 chr6 92194380 92194693 -97084861 - AluSx SINE Alu -1 311 1 1873 92 14 25 chr6 92194693 92194812 -97084742 - MER61B-int LTR ERV1 -3737 1480 1361 * 5013 121 8 51 chr6 92194807 92195062 -97084492 - MER61B-int LTR ERV1 -4004 1213 949 3338 102 45 4 chr6 92195062 92195553 -97084001 + MER9 LTR ERVK 1 511 0 5013 121 8 51 chr6 92195553 92196185 -97083369 - MER61B-int LTR ERV1 -4268 949 364 2104 179 26 13 chr6 92196578 92196969 -97082585 - MER61B LTR ERV1 -29 396 1 1959 103 48 0 chr6 92197437 92197708 -97081846 - AluSc SINE Alu -25 284 1 21 36 0 0 chr6 92200625 92200653 -97078901 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr6 92201093 92201128 -97078426 + AT_rich Low_complexity Low_complexity 1 35 0 1720 164 43 48 chr6 92201198 92201569 -97077985 + THE1C LTR MaLR 3 371 -4 918 36 0 0 chr6 92201636 92201748 -97077806 + L1PA5 LINE L1 6040 6151 -3 1662 162 0 37 chr6 92201827 92202123 -97077431 + AluJo SINE Alu 1 285 -27 2372 62 7 13 chr6 92202424 92202728 -97076826 - AluY SINE Alu -9 302 1 306 354 99 25 chr6 92202776 92203129 -97076425 + L2 LINE L2 2151 2529 -785 272 266 86 36 chr6 92203715 92203854 -97075700 + L2 LINE L2 3168 3313 0 323 273 56 28 chr6 92204022 92204165 -97075389 + L1ME LINE L1 2453 2599 -3547 25 31 0 0 chr6 92204302 92204334 -97075220 + AT_rich Low_complexity Low_complexity 1 32 0 318 294 88 26 chr6 92204507 92204735 -97074819 + L1ME LINE L1 4774 5015 -1131 392 274 44 0 chr6 92205045 92205218 -97074336 + L1ME LINE L1 5635 5817 -345 343 171 0 23 chr6 92205442 92205530 -97074024 + (TA)n Simple_repeat Simple_repeat 2 87 0 216 284 81 0 chr6 92205600 92205674 -97073880 + L2 LINE L2 3234 3313 0 767 267 24 19 chr6 92206444 92206654 -97072900 + MIR SINE MIR 6 216 -46 337 193 41 35 chr6 92209419 92209564 -97069990 + (TA)n Simple_repeat Simple_repeat 2 147 0 217 398 0 21 chr6 92209618 92209711 -97069843 - MIR SINE MIR -152 110 20 21 71 0 0 chr6 92210255 92210297 -97069257 + AT_rich Low_complexity Low_complexity 1 42 0 1133 174 22 17 chr6 92210305 92210535 -97069019 - AluJo SINE Alu -26 286 56 212 240 0 0 chr6 92210948 92210998 -97068556 + (TAAG)n Simple_repeat Simple_repeat 2 51 0 491 46 0 0 chr6 92211245 92211310 -97068244 + L1PA4 LINE L1 6080 6144 -11 282 32 3 44 chr6 92212519 92212573 -97066981 - L1PA6 LINE L1 0 6154 6105 333 342 65 34 chr6 92213118 92213381 -97066173 - L1M4 LINE L1 -2608 3538 3268 906 227 60 28 chr6 92213471 92213823 -97065731 - L1MC5 LINE L1 -28 7933 7571 275 286 44 0 chr6 92213843 92213934 -97065620 - L1MC5 LINE L1 -541 7420 7326 999 242 171 90 chr6 92213936 92214639 -97064915 + LTR41 LTR ERVL 6 765 -8 902 262 52 102 chr6 92214777 92215509 -97064045 - L1MC5 LINE L1 -724 7237 6542 2232 86 0 16 chr6 92215598 92215901 -97063653 - AluSc SINE Alu -11 298 1 1642 273 82 19 chr6 92215934 92216305 -97063249 - L1M4 LINE L1 -1518 4628 4282 366 23 0 0 chr6 92216305 92216348 -97063206 + (CA)n Simple_repeat Simple_repeat 2 44 0 1642 273 82 19 chr6 92216348 92216723 -97062831 - L1M4 LINE L1 -1864 4282 3835 228 35 0 0 chr6 92216758 92216787 -97062767 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 509 350 108 0 chr6 92216788 92217002 -97062552 - L2 LINE L2 -167 3146 2910 22 73 0 15 chr6 92217941 92217986 -97061568 + AT_rich Low_complexity Low_complexity 1 46 -21 2130 129 0 0 chr6 92217986 92218297 -97061257 + AluY SINE Alu 1 311 0 22 73 0 15 chr6 92218297 92218319 -97061235 + AT_rich Low_complexity Low_complexity 46 67 0 198 71 0 0 chr6 92220018 92220046 -97059508 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 24 0 0 0 chr6 92222424 92222448 -97057106 + AT_rich Low_complexity Low_complexity 1 24 0 2167 230 97 15 chr6 92223210 92223862 -97055692 - L1ME1 LINE L1 -5 6397 5693 2125 250 53 33 chr6 92223881 92224221 -97055333 - L1ME1 LINE L1 -743 5639 5307 2124 111 3 3 chr6 92224221 92224518 -97055036 - AluSg1 SINE Alu -12 297 1 2125 250 53 33 chr6 92224518 92225968 -97053586 - L1ME1 LINE L1 -1075 5307 3733 297 0 0 0 chr6 92225973 92226006 -97053548 + (TG)n Simple_repeat Simple_repeat 2 34 0 574 161 45 0 chr6 92226006 92226118 -97053436 + MER63 DNA MER1_type 908 1024 -36 318 312 89 21 chr6 92226302 92226584 -97052970 - L1 LINE L1 -1098 5048 4748 4352 200 53 46 chr6 92226950 92228701 -97050853 - L1MB3 LINE L1 0 6183 4414 1863 120 14 4 chr6 92228701 92229020 -97050534 - AluSc SINE Alu 0 322 1 4352 200 53 46 chr6 92229020 92229405 -97050149 - L1MB3 LINE L1 -1769 4414 4033 1228 267 75 17 chr6 92229406 92229994 -97049560 - L1ME1 LINE L1 -2742 3640 3019 21 0 0 0 chr6 92230104 92230125 -97049429 + AT_rich Low_complexity Low_complexity 1 21 0 369 216 62 105 chr6 92230335 92230497 -97049057 - L1MA9 LINE L1 -33 6279 6125 1949 108 4 4 chr6 92230497 92230775 -97048779 + AluSx SINE Alu 1 278 -34 1968 183 26 13 chr6 92230798 92231180 -97048374 - L1MA9 LINE L1 -174 6138 5752 1232 255 23 25 chr6 92231182 92231613 -97047941 - L1ME1 LINE L1 -3368 3014 2585 688 246 12 0 chr6 92231616 92231783 -97047771 + L1PB4 LINE L1 5980 6148 -8 4189 167 50 34 chr6 92231841 92232515 -97047039 - L1ME1 LINE L1 -3884 2500 1896 1754 117 60 15 chr6 92232515 92232815 -97046739 + AluSg SINE Alu 3 314 0 4189 167 50 34 chr6 92232815 92233129 -97046425 - L1ME1 LINE L1 -4488 1896 1589 3582 185 8 0 chr6 92233131 92233781 -97045773 + L1PA16 LINE L1 5498 6152 -14 834 288 48 22 chr6 92233789 92233824 -97045730 - L1ME LINE L1 -3513 2869 2836 2061 139 93 18 chr6 92233824 92234220 -97045334 + MSTA LTR MaLR 1 426 -2 834 288 48 22 chr6 92234220 92234688 -97044866 - L1ME LINE L1 -3546 2836 2353 709 219 106 67 chr6 92234713 92234996 -97044558 + MLT1A1 LTR MaLR 1 294 -71 959 281 51 42 chr6 92235020 92235641 -97043913 - L1ME LINE L1 -4653 1731 1125 2282 132 79 17 chr6 92235641 92236044 -97043510 + MSTA LTR MaLR 1 428 0 2922 309 60 42 chr6 92236065 92237294 -97042260 - L2 LINE L2 -1710 1604 353 763 164 0 15 chr6 92237298 92237432 -97042122 - AluSq/x SINE Alu -181 132 1 301 311 30 55 chr6 92237434 92237576 -97041978 - L2 LINE L2 -2945 369 225 1851 170 111 13 chr6 92237576 92237964 -97041590 - MSTA LTR MaLR 0 428 3 8225 154 30 37 chr6 92237966 92239556 -97039998 - MSTA-int LTR MaLR 0 1580 3 1833 169 125 13 chr6 92239558 92239943 -97039611 - MSTA LTR MaLR 0 428 1 301 311 30 55 chr6 92239943 92239958 -97039596 - L2 LINE L2 -3091 223 210 1671 165 49 35 chr6 92241316 92241686 -97037868 - THE1C LTR MaLR 0 375 1 189 300 0 88 chr6 92241779 92241859 -97037695 - MIR SINE MIR -95 113 41 183 80 0 0 chr6 92242472 92242497 -97037057 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 314 296 66 25 chr6 92243086 92243265 -97036289 + MIR SINE MIR 70 257 -5 1529 157 103 57 chr6 92243714 92244083 -97035471 + MLT1B LTR MaLR 1 386 -4 7312 40 3 2 chr6 92244767 92245697 -97033857 + L1PA5 LINE L1 5223 6153 -1 651 128 68 8 chr6 92245724 92245841 -97033713 - L1MB2 LINE L1 -136 6035 5912 33 0 0 0 chr6 92245946 92245979 -97033575 + AT_rich Low_complexity Low_complexity 1 33 0 193 233 12 12 chr6 92246141 92246227 -97033327 + CT-rich Low_complexity Low_complexity 2 87 0 27 49 0 0 chr6 92246540 92246581 -97032973 + AT_rich Low_complexity Low_complexity 1 41 0 393 272 103 15 chr6 92247136 92247272 -97032282 - MIR SINE MIR -37 225 78 28 48 0 0 chr6 92247368 92247410 -97032144 + AT_rich Low_complexity Low_complexity 1 42 0 3081 251 95 25 chr6 92248765 92250122 -97029432 - L1MEc LINE L1 -946 5269 3818 6107 28 0 0 chr6 92250126 92250839 -97028715 - L1PA3 LINE L1 0 6155 5443 7663 32 0 0 chr6 92250839 92251777 -97027777 + L1P LINE L1 4466 5403 -743 1077 225 48 105 chr6 92251792 92252413 -97027141 - L1MEc LINE L1 -2392 3823 3238 2602 302 76 40 chr6 92252440 92252506 -97027048 - L1MEc LINE L1 -4795 1601 1539 2257 74 40 0 chr6 92252506 92252804 -97026750 - AluY SINE Alu -1 310 1 2602 302 76 40 chr6 92252804 92254248 -97025306 - L1MEc LINE L1 -4857 1539 36 347 267 95 47 chr6 92254605 92254837 -97024717 + L1ME4a LINE L1 5684 5926 -195 23 33 0 0 chr6 92254837 92254867 -97024687 + AT_rich Low_complexity Low_complexity 1 30 0 7988 29 0 0 chr6 92254968 92256719 -97022835 - L1PA3 LINE L1 0 6155 4434 21248 29 0 0 chr6 92256719 92259278 -97020276 + L1PA3 LINE L1 1878 4436 -1710 361 108 62 0 chr6 92259303 92259368 -97020186 - MADE1 DNA Mariner 0 80 12 258 32 0 0 chr6 92260637 92260668 -97018886 + (CA)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr6 92260819 92260840 -97018714 + AT_rich Low_complexity Low_complexity 1 21 0 203 356 59 0 chr6 92261081 92261182 -97018372 - L2 LINE L2 0 3272 3166 361 309 101 20 chr6 92261544 92261693 -97017861 - MIR SINE MIR -70 192 32 367 258 136 7 chr6 92261759 92261914 -97017640 + MER5B DNA MER1_type 1 175 -3 1780 149 43 54 chr6 92261993 92262363 -97017191 - MER47A DNA MER2_type 0 366 1 23 0 0 0 chr6 92263308 92263331 -97016223 + AT_rich Low_complexity Low_complexity 1 23 0 1755 191 43 27 chr6 92264562 92264938 -97014616 + MLT1B LTR MaLR 1 382 -8 870 374 63 39 chr6 92265089 92265597 -97013957 + L2 LINE L2 2129 2666 -648 2300 113 0 0 chr6 92265597 92265898 -97013656 + AluSg SINE Alu 1 301 -9 870 374 63 39 chr6 92265898 92266218 -97013336 + L2 LINE L2 2666 2977 -337 369 310 227 18 chr6 92267144 92267373 -97012181 - L3 LINE CR1 -1 1576 1300 22 0 0 0 chr6 92267526 92267548 -97012006 + AT_rich Low_complexity Low_complexity 1 22 0 305 409 23 0 chr6 92267659 92267830 -97011724 - L3 LINE CR1 -350 1227 1053 235 301 82 20 chr6 92268647 92268793 -97010761 + LTR68 LTR ERV1 9 163 -577 1880 154 0 11 chr6 92269620 92269906 -97009648 - AluJb SINE Alu -24 288 6 304 182 0 0 chr6 92269915 92269970 -97009584 + L1MB8 LINE L1 6115 6169 -9 201 74 0 0 chr6 92270010 92270037 -97009517 + (T)n Simple_repeat Simple_repeat 1 27 0 14190 171 33 6 chr6 92270069 92270438 -97009116 - L1PB1 LINE L1 -1 6866 6508 342 0 0 0 chr6 92270438 92270476 -97009078 + (TA)n Simple_repeat Simple_repeat 1 38 0 14190 171 33 6 chr6 92270476 92276066 -97003488 - L1PB1 LINE L1 -359 6508 603 792 126 31 0 chr6 92276127 92276254 -97003300 - L1PB1 LINE L1 -6730 133 3 280 338 101 25 chr6 92276301 92276499 -97003055 + L2 LINE L2 2762 2971 -301 705 280 55 47 chr6 92276566 92277010 -97002544 + MLT1J1 LTR MaLR 1 446 0 432 307 34 87 chr6 92278084 92278521 -97001033 + MLT1J1 LTR MaLR 1 414 -32 321 82 0 0 chr6 92278859 92278908 -97000646 + (CA)n Simple_repeat Simple_repeat 1 49 0 1977 200 83 21 chr6 92279964 92280448 -96999106 + MER67D LTR ERV1 1 514 0 208 219 0 0 chr6 92280650 92280691 -96998863 + L2 LINE L2 3273 3313 0 234 207 0 35 chr6 92280780 92280838 -96998716 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 288 137 0 0 chr6 92280973 92281024 -96998530 + (CA)n Simple_repeat Simple_repeat 2 52 0 266 247 0 62 chr6 92282002 92282099 -96997455 - MLT1K LTR MaLR 0 588 498 608 297 109 21 chr6 92283247 92283486 -96996068 - MIR SINE MIR 0 262 3 1197 158 108 0 chr6 92283874 92284133 -96995421 + L1MA8 LINE L1 6001 6287 -4 25 0 0 0 chr6 92284223 92284248 -96995306 + AT_rich Low_complexity Low_complexity 1 25 0 31 92 0 0 chr6 92284442 92284529 -96995025 + AT_rich Low_complexity Low_complexity 1 87 0 1440 211 121 20 chr6 92284728 92285083 -96994471 + MSTD LTR MaLR 1 391 -5 1644 181 28 0 chr6 92285193 92285475 -96994079 + AluJo SINE Alu 1 290 -22 300 320 0 32 chr6 92286712 92286837 -96992717 + MIR SINE MIR 24 144 -64 498 281 14 7 chr6 92288113 92288252 -96991302 - L2 LINE L2 -2 3311 3172 27 0 0 0 chr6 92288273 92288300 -96991254 + AT_rich Low_complexity Low_complexity 1 27 0 4816 261 42 29 chr6 92288633 92290201 -96989353 - Charlie1 DNA MER1_type -1173 1588 1 2451 99 3 43 chr6 92290783 92291156 -96988398 - THE1B LTR MaLR -2 362 5 1975 226 82 16 chr6 92291160 92291732 -96987822 + LTR48B LTR ERV1 35 644 0 228 346 77 0 chr6 92291738 92291816 -96987738 - L3 LINE CR1 -45 1532 1449 224 336 71 57 chr6 92291964 92292104 -96987450 + MIR3 SINE MIR 60 201 -7 30 27 0 0 chr6 92292302 92292339 -96987215 + AT_rich Low_complexity Low_complexity 1 37 0 1169 304 23 39 chr6 92292527 92293043 -96986511 + L1ME1 LINE L1 177 684 -5521 656 294 99 19 chr6 92293069 92293542 -96986012 + L1ME1 LINE L1 1342 1852 -4544 334 248 124 39 chr6 92293807 92293960 -96985594 + L1ME1 LINE L1 3170 3335 -2880 4424 221 75 38 chr6 92294074 92295403 -96984151 + L1MC4a LINE L1 6166 7544 -264 503 218 56 5 chr6 92295404 92295661 -96983893 + MER89 LTR ERV1 1 299 -260 274 152 0 0 chr6 92295666 92295712 -96983842 + MER89 LTR ERV1 514 559 0 966 212 102 0 chr6 92295712 92295957 -96983597 + L1MD3 LINE L1 7715 7984 -11 * 2016 240 123 41 chr6 92295946 92296993 -96982561 + L1ME1 LINE L1 5079 6216 -19 24 67 0 0 chr6 92296997 92297042 -96982512 + AT_rich Low_complexity Low_complexity 1 45 0 188 235 0 0 chr6 92297055 92297089 -96982465 - L3b LINE CR1 -17 1566 1533 300 120 0 0 chr6 92297229 92297279 -96982275 + (TA)n Simple_repeat Simple_repeat 1 50 0 656 112 17 17 chr6 92299428 92299544 -96980010 + L1PA15 LINE L1 6050 6165 0 28 29 0 0 chr6 92300012 92300047 -96979507 + AT_rich Low_complexity Low_complexity 1 35 0 582 275 36 6 chr6 92301220 92301387 -96978167 + MIR SINE MIR 21 192 -70 321 164 0 0 chr6 92302861 92302916 -96976638 - MLT2A2 LTR ERVL 0 453 399 28 29 0 0 chr6 92303248 92303283 -96976271 + AT_rich Low_complexity Low_complexity 1 35 0 1637 210 134 11 chr6 92304148 92304595 -96974959 - MLT1D LTR MaLR -3 502 1 238 289 0 96 chr6 92304669 92304752 -96974802 - MIR SINE MIR -116 92 18 460 311 11 0 chr6 92306794 92306971 -96972583 + CT-rich Low_complexity Low_complexity 2 180 0 187 389 56 0 chr6 92307004 92307094 -96972460 + L2 LINE L2 3122 3216 -56 225 330 107 51 chr6 92307449 92307646 -96971908 - MIR SINE MIR -13 249 42 279 318 36 109 chr6 92308663 92308855 -96970699 + MIR3 SINE MIR 25 202 -6 227 172 0 35 chr6 92310584 92310642 -96968912 + L1MCa LINE L1 2008 2063 -4363 347 330 11 40 chr6 92311102 92311278 -96968276 - HERVL LTR ERVL -3352 2302 2132 256 319 168 34 chr6 92311407 92311526 -96968028 - HERVL LTR ERVL -3642 2122 1988 1501 191 47 135 chr6 92311547 92312012 -96967542 - MLT1D LTR MaLR -4 501 -3 2522 164 17 0 chr6 92312012 92312433 -96967121 + MSTA LTR MaLR 1 428 0 7683 175 51 30 chr6 92312433 92314050 -96965504 + MSTA-int LTR MaLR 1 1651 0 2010 157 123 5 chr6 92314050 92314433 -96965121 + MSTA LTR MaLR 1 428 0 1501 191 47 135 chr6 92314433 92314514 -96965040 - MLT1D LTR MaLR -504 1 1 1085 221 72 90 chr6 92315177 92315566 -96963988 + MER66A LTR ERV1 97 478 0 7911 216 99 35 chr6 92315799 92315972 -96963582 + MER66A-int LTR ERV1 22 183 -6493 1976 93 0 29 chr6 92315972 92316250 -96963304 + AluY SINE Alu 39 308 -3 7911 216 99 35 chr6 92316250 92318093 -96961461 + MER66A-int LTR ERV1 183 2166 -4510 5104 232 24 26 chr6 92318087 92319207 -96960347 + MER66A-int LTR ERV1 2333 3450 -3226 * 1165 178 39 12 chr6 92319208 92319467 -96960087 + MER66A-int LTR ERV1 3556 3821 -2855 923 115 0 14 chr6 92319469 92319608 -96959946 + LTR7 LTR ERV1 1 137 -313 726 209 68 34 chr6 92319811 92320017 -96959537 + LTR7 LTR ERV1 238 450 0 2544 182 58 40 chr6 92320018 92320644 -96958910 + MER66A-int LTR ERV1 3816 4452 -2224 409 245 57 28 chr6 92320644 92320750 -96958804 + MER4D LTR ERV1 52 160 -712 1468 200 73 32 chr6 92320750 92321120 -96958434 + MER66A-int LTR ERV1 4557 4941 -1735 1301 235 40 0 chr6 92321109 92321381 -96958173 + MER66A-int LTR ERV1 6390 6672 -4 * 1170 203 79 95 chr6 92321466 92321908 -96957646 + MER66A LTR ERV1 97 467 -11 275 274 17 17 chr6 92321916 92322033 -96957521 - HERVL LTR ERVL -4549 1215 1099 393 276 0 9 chr6 92322620 92322725 -96956829 + MER58C DNA MER1_type 112 215 0 1989 131 3 0 chr6 92322760 92323042 -96956512 + AluSx SINE Alu 1 283 -29 1320 206 15 4 chr6 92323151 92323423 -96956131 - AluJb SINE Alu -8 304 30 773 288 61 93 chr6 92323617 92324092 -96955462 - LTR33A LTR ERVL -4 519 60 256 286 89 18 chr6 92324307 92324419 -96955135 - L1 LINE L1 -1982 4164 4045 22 0 0 0 chr6 92324477 92324499 -96955055 + AT_rich Low_complexity Low_complexity 1 22 0 2936 185 38 61 chr6 92324521 92325255 -96954299 - L1MA10 LINE L1 -7 6327 5611 2644 219 77 15 chr6 92325250 92326045 -96953509 + L1 LINE L1 2508 3351 -2795 * 186 364 30 0 chr6 92327745 92327811 -96951743 - L2 LINE L2 0 3272 3205 1769 155 7 4 chr6 92328764 92329067 -96950487 + AluSx SINE Alu 3 306 0 4215 275 91 44 chr6 92329588 92333559 -96945995 + L1ME1 LINE L1 357 4526 -1554 5831 99 18 31 chr6 92333603 92334545 -96945009 - L1MA1 LINE L1 0 6302 5373 1946 75 0 4 chr6 92334545 92334799 -96944755 + AluY SINE Alu 52 304 -7 449 279 46 29 chr6 92334799 92334835 -96944719 + L1ME1 LINE L1 4919 4953 -1127 2991 194 91 49 chr6 92334835 92335341 -96944213 + MER54B LTR ERVL 1 551 -242 648 38 0 0 chr6 92335341 92335420 -96944134 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 2991 194 91 49 chr6 92335420 92335674 -96943880 + MER54B LTR ERVL 551 793 0 449 279 46 29 chr6 92335674 92335877 -96943677 + L1ME1 LINE L1 4953 5162 -918 2129 246 105 26 chr6 92335934 92336721 -96942833 + L1ME1 LINE L1 5258 6111 -1 181 395 0 0 chr6 92336941 92337022 -96942532 + L2 LINE L2 2239 2319 -995 336 303 66 16 chr6 92337161 92337283 -96942271 - MIR SINE MIR -70 192 65 1696 139 21 35 chr6 92337351 92337638 -96941916 - AluSx SINE Alu -29 283 1 255 317 40 0 chr6 92337745 92337846 -96941708 + MIR SINE MIR 58 162 -100 5921 152 13 1 chr6 92338923 92339943 -96939611 - L1P LINE L1 -804 5342 4311 3316 100 6 4 chr6 92339943 92340429 -96939125 + L1PA10 LINE L1 5675 6164 -4 470 282 75 44 chr6 92340510 92340737 -96938817 + MIR SINE MIR 28 261 -1 931 228 24 24 chr6 92341139 92341350 -96938204 + MER63B DNA MER1_type 1 211 -225 29 70 0 0 chr6 92341377 92341434 -96938120 + AT_rich Low_complexity Low_complexity 1 57 0 835 216 5 39 chr6 92341434 92341642 -96937912 + MER63B DNA MER1_type 234 434 0 3110 213 92 41 chr6 92341954 92342836 -96936718 - L1MD1 LINE L1 -6 6630 5704 1031 139 44 11 chr6 92342839 92343153 -96936401 + THE1C LTR MaLR 1 375 0 353 175 0 0 chr6 92343215 92343278 -96936276 - L1MD1 LINE L1 -883 5657 5595 2625 77 61 5 chr6 92343289 92343668 -96935886 + MLT2A1 LTR ERVL 1 400 -44 216 67 0 0 chr6 92343668 92343698 -96935856 + (GA)n Simple_repeat Simple_repeat 2 31 0 290 98 20 0 chr6 92343714 92343765 -96935789 + (TA)n Simple_repeat Simple_repeat 1 52 0 * 441 0 0 0 chr6 92343764 92343813 -96935741 + (GA)n Simple_repeat Simple_repeat 2 50 0 11138 108 7 1 chr6 92343854 92345422 -96934132 + THE1A-int LTR MaLR 3 1580 0 2419 105 9 6 chr6 92345422 92345765 -96933789 + THE1A LTR MaLR 1 344 -11 558 285 107 8 chr6 92345765 92346837 -96932717 - L1MD1 LINE L1 -951 5589 4369 250 341 12 0 chr6 92346838 92346923 -96932631 + MER21B LTR ERV1 1 86 -777 2617 273 49 12 chr6 92346949 92347708 -96931846 + MER21B LTR ERV1 19 805 -58 363 192 12 3 chr6 92347729 92347834 -96931720 - L1 LINE L1 -2173 3973 3869 3217 176 89 20 chr6 92347835 92348699 -96930855 - L1MD1 LINE L1 -3890 2650 1823 3142 255 82 34 chr6 92348697 92349592 -96929962 - L1MD1 LINE L1 -5585 955 18 * 291 150 50 17 chr6 92349855 92349915 -96929639 - L1MC5 LINE L1 -568 7393 7332 359 286 113 16 chr6 92349915 92350100 -96929454 - MLT1D LTR MaLR -126 379 177 42205 55 7 0 chr6 92350422 92356539 -96923015 - L1PA4 LINE L1 -5 6150 1 34 72 0 0 chr6 92357020 92357089 -96922465 + AT_rich Low_complexity Low_complexity 1 69 0 1159 234 70 118 chr6 92358091 92358509 -96921045 - MER66A LTR ERV1 0 524 165 10843 192 82 79 chr6 92358547 92360363 -96919191 - MER66A-int LTR ERV1 0 6676 4867 1775 153 36 0 chr6 92360363 92360638 -96918916 - AluSg SINE Alu -25 285 1 10843 192 82 79 chr6 92360638 92361180 -96918374 - MER66A-int LTR ERV1 -1809 4867 4328 189 0 0 0 chr6 92361180 92361201 -96918353 + (CAA)n Simple_repeat Simple_repeat 2 22 0 10843 192 82 79 chr6 92361201 92362281 -96917273 - MER66A-int LTR ERV1 -2348 4328 1213 836 159 13 82 chr6 92362327 92362560 -96916994 - MER66A-int LTR ERV1 -220 1566 1350 * 1350 191 31 20 chr6 92362555 92362849 -96916705 - MER66A-int LTR ERV1 -365 1421 1125 533 302 12 18 chr6 92362855 92363024 -96916530 - MER66A-int LTR ERV1 -3574 3102 2935 4196 225 130 74 chr6 92363039 92364798 -96914756 - MER66A-int LTR ERV1 -4799 1877 21 1351 217 161 7 chr6 92364822 92365221 -96914333 - MER66A LTR ERV1 0 478 97 1085 280 8 8 chr6 92365807 92366075 -96913479 + ERVL LTR ERVL 4400 4667 -1097 1825 252 113 26 chr6 92366286 92367003 -96912551 + L1MC4 LINE L1 7122 7900 -142 1807 165 6 22 chr6 92367526 92367841 -96911713 + AluSx SINE Alu 1 310 -2 399 175 48 0 chr6 92367853 92367956 -96911598 + GA-rich Low_complexity Low_complexity 3 110 0 25 0 0 0 chr6 92368312 92368337 -96911217 + AT_rich Low_complexity Low_complexity 1 25 0 217 301 24 36 chr6 92368443 92368526 -96911028 + MIR3 SINE MIR 83 164 -44 498 299 64 30 chr6 92368531 92368765 -96910789 - MIR SINE MIR -14 248 7 21 0 0 0 chr6 92369322 92369343 -96910211 + AT_rich Low_complexity Low_complexity 1 21 0 2123 239 12 63 chr6 92369494 92370088 -96909466 - MLT2B3 LTR ERVL 0 508 2 185 0 0 39 chr6 92370091 92370117 -96909437 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 720 142 77 0 chr6 92371029 92371184 -96908370 - L1MA8 LINE L1 0 6291 6125 492 272 150 6 chr6 92371394 92371574 -96907980 - MIR SINE MIR -13 249 44 832 166 57 10 chr6 92371730 92371923 -96907631 - L1MC3 LINE L1 -18 7767 7566 204 125 0 0 chr6 92372006 92372038 -96907516 + (TA)n Simple_repeat Simple_repeat 1 32 0 223 295 77 0 chr6 92373035 92373113 -96906441 + L2 LINE L2 925 1008 -2306 1468 206 28 68 chr6 92373116 92373510 -96906044 + MLT1B LTR MaLR 3 380 -10 1207 307 114 47 chr6 92373511 92373935 -96905619 + L2 LINE L2 991 1484 -1830 2310 87 0 0 chr6 92373935 92374234 -96905320 + AluY SINE Alu 1 299 -12 1207 307 114 47 chr6 92374234 92374528 -96905026 + L2 LINE L2 1484 1757 -1557 289 337 107 5 chr6 92374818 92375014 -96904540 + L1MC/D LINE L1 5533 5748 -373 294 29 0 0 chr6 92375394 92375429 -96904125 + (TG)n Simple_repeat Simple_repeat 2 36 0 996 229 5 0 chr6 92375715 92375920 -96903634 + L1MA6 LINE L1 13 218 -7347 364 169 0 0 chr6 92375919 92375990 -96903564 - L1 LINE L1 -2364 3782 3712 * 4833 191 64 12 chr6 92377246 92378426 -96901128 + L1MA6 LINE L1 4401 5642 -1923 301 74 19 19 chr6 92378429 92378483 -96901071 + (TA)n Simple_repeat Simple_repeat 2 55 0 28 29 0 0 chr6 92378724 92378759 -96900795 + AT_rich Low_complexity Low_complexity 1 35 0 393 287 6 6 chr6 92378834 92378998 -96900556 + (TA)n Simple_repeat Simple_repeat 1 164 0 4297 183 39 8 chr6 92379018 92379934 -96899620 + L1MA6 LINE L1 5636 6580 -985 3208 186 30 12 chr6 92379934 92380619 -96898935 + L1MA6 LINE L1 7010 7714 -5 25 65 0 0 chr6 92381871 92381917 -96897637 + AT_rich Low_complexity Low_complexity 1 46 0 27 29 0 0 chr6 92383288 92383322 -96896232 + AT_rich Low_complexity Low_complexity 1 34 0 644 325 47 25 chr6 92383628 92383905 -96895649 - MLT1J LTR MaLR 0 511 229 1257 236 58 16 chr6 92383923 92384287 -96895267 - L1ME2 LINE L1 -9 6155 5777 234 345 103 36 chr6 92384305 92384499 -96895055 - L1MEc LINE L1 -5919 477 271 554 318 31 18 chr6 92384741 92384964 -96894590 - MLT1J LTR MaLR -275 236 11 12254 31 1 0 chr6 92385148 92386617 -96892937 - L1PA4 LINE L1 -905 5241 3771 7206 42 1 7 chr6 92386623 92387529 -96892025 + L1PA4 LINE L1 5255 6155 0 338 327 80 35 chr6 92387569 92387908 -96891646 + L1ME LINE L1 5473 5826 -344 661 238 33 7 chr6 92389584 92389735 -96889819 + MER5B DNA MER1_type 24 178 0 185 314 0 29 chr6 92389881 92389951 -96889603 + MER5B DNA MER1_type 111 178 0 1729 155 44 25 chr6 92390268 92390635 -96888919 - THE1C LTR MaLR 0 375 2 222 342 0 0 chr6 92393281 92393360 -96886194 - L2 LINE L2 -508 2806 2728 22 70 0 0 chr6 92394388 92394431 -96885123 + AT_rich Low_complexity Low_complexity 1 43 0 517 278 56 40 chr6 92394457 92394655 -96884899 - MIR SINE MIR -1 261 61 1176 90 0 18 chr6 92394756 92394922 -96884632 - AluY SINE Alu 0 311 149 212 317 87 19 chr6 92394974 92395078 -96884476 + L3 LINE CR1 673 783 -794 680 47 0 0 chr6 92395271 92395357 -96884197 + AluSg/x SINE Alu 214 299 -13 246 311 161 19 chr6 92395895 92396056 -96883498 + L3 LINE CR1 1011 1194 -383 212 276 142 31 chr6 92396092 92396219 -96883335 + L3 LINE CR1 1292 1432 -145 1897 164 69 21 chr6 92396558 92396936 -96882618 - MER61B LTR ERV1 -29 396 1 20145 111 38 29 chr6 92396936 92397488 -96882066 - MER61B-int LTR ERV1 0 5217 4671 2358 112 34 11 chr6 92397488 92397844 -96881710 + THE1B LTR MaLR 1 364 0 20145 111 38 29 chr6 92397844 92400509 -96879045 - MER61B-int LTR ERV1 -546 4671 1972 1873 92 14 25 chr6 92400488 92400651 -96878903 - MER61B-int LTR ERV1 -3577 1640 1480 * 2169 128 0 6 chr6 92400651 92400964 -96878590 - AluSx SINE Alu -1 311 1 1873 92 14 25 chr6 92400964 92401083 -96878471 - MER61B-int LTR ERV1 -3737 1480 1361 * 5013 121 8 51 chr6 92401078 92401333 -96878221 - MER61B-int LTR ERV1 -4004 1213 949 3338 102 45 4 chr6 92401333 92401824 -96877730 + MER9 LTR ERVK 1 511 0 5013 121 8 51 chr6 92401824 92402456 -96877098 - MER61B-int LTR ERV1 -4268 949 364 2104 179 26 13 chr6 92402849 92403240 -96876314 - MER61B LTR ERV1 -29 396 1 1959 103 48 0 chr6 92403710 92403981 -96875573 - AluSc SINE Alu -25 284 1 21 36 0 0 chr6 92406898 92406926 -96872628 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr6 92407366 92407401 -96872153 + AT_rich Low_complexity Low_complexity 1 35 0 1720 164 43 48 chr6 92407471 92407842 -96871712 + THE1C LTR MaLR 3 371 -4 878 37 0 0 chr6 92407909 92408016 -96871538 + L1PA4 LINE L1 6041 6147 -8 1662 162 0 37 chr6 92408100 92408396 -96871158 + AluJo SINE Alu 1 285 -27 2372 62 7 13 chr6 92408697 92409001 -96870553 - AluY SINE Alu -9 302 1 306 354 99 25 chr6 92409049 92409402 -96870152 + L2 LINE L2 2151 2529 -785 272 266 86 36 chr6 92409988 92410127 -96869427 + L2 LINE L2 3168 3313 0 323 273 56 28 chr6 92410295 92410438 -96869116 + L1ME LINE L1 2453 2599 -3547 25 31 0 0 chr6 92410575 92410607 -96868947 + AT_rich Low_complexity Low_complexity 1 32 0 318 294 88 26 chr6 92410780 92411008 -96868546 + L1ME LINE L1 4774 5015 -1131 392 274 44 0 chr6 92411318 92411491 -96868063 + L1ME LINE L1 5635 5817 -345 343 171 0 23 chr6 92411715 92411803 -96867751 + (TA)n Simple_repeat Simple_repeat 2 87 0 216 284 81 0 chr6 92411873 92411947 -96867607 + L2 LINE L2 3234 3313 0 767 267 24 19 chr6 92412717 92412927 -96866627 + MIR SINE MIR 6 216 -46 337 193 41 35 chr6 92415692 92415837 -96863717 + (TA)n Simple_repeat Simple_repeat 2 147 0 217 398 0 21 chr6 92415891 92415984 -96863570 - MIR SINE MIR -152 110 20 1133 174 22 17 chr6 92416578 92416808 -96862746 - AluJo SINE Alu -26 286 56 212 240 0 0 chr6 92417221 92417271 -96862283 + (TAAG)n Simple_repeat Simple_repeat 2 51 0 491 46 0 0 chr6 92417518 92417583 -96861971 + L1PA4 LINE L1 6080 6144 -11 282 32 3 44 chr6 92418788 92418842 -96860712 - L1PA6 LINE L1 0 6154 6105 312 346 65 34 chr6 92419387 92419650 -96859904 - L1M4 LINE L1 -2608 3538 3268 906 227 60 28 chr6 92419740 92420092 -96859462 - L1MC5 LINE L1 -28 7933 7571 275 286 44 0 chr6 92420112 92420203 -96859351 - L1MC5 LINE L1 -541 7420 7326 1047 238 171 90 chr6 92420205 92420908 -96858646 + LTR41 LTR ERVL 6 765 -8 919 260 52 102 chr6 92421046 92421778 -96857776 - L1MC5 LINE L1 -724 7237 6542 2241 86 0 16 chr6 92421867 92422171 -96857383 - AluSc SINE Alu -10 299 1 1613 275 82 20 chr6 92422204 92422575 -96856979 - L1M4 LINE L1 -1518 4628 4281 261 0 0 0 chr6 92422575 92422604 -96856950 + (CA)n Simple_repeat Simple_repeat 2 30 0 1613 275 82 20 chr6 92422604 92422980 -96856574 - L1M4 LINE L1 -1865 4281 3835 228 35 0 0 chr6 92423015 92423044 -96856510 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 509 350 108 0 chr6 92423045 92423259 -96856295 - L2 LINE L2 -167 3146 2910 22 73 0 15 chr6 92424197 92424242 -96855312 + AT_rich Low_complexity Low_complexity 1 46 -21 2165 122 0 0 chr6 92424242 92424553 -96855001 + AluY SINE Alu 1 311 0 22 73 0 15 chr6 92424553 92424575 -96854979 + AT_rich Low_complexity Low_complexity 46 67 0 198 71 0 0 chr6 92426279 92426307 -96853247 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 24 0 0 0 chr6 92428686 92428710 -96850844 + AT_rich Low_complexity Low_complexity 1 24 0 2194 234 93 15 chr6 92429472 92430126 -96849428 - L1ME1 LINE L1 -5 6397 5693 2114 254 53 32 chr6 92430145 92430485 -96849069 - L1ME1 LINE L1 -743 5639 5307 2202 108 0 7 chr6 92430485 92430792 -96848762 - AluSg1 SINE Alu -4 305 1 2114 254 53 32 chr6 92430792 92432242 -96847312 - L1ME1 LINE L1 -1075 5307 3733 336 24 0 0 chr6 92432247 92432288 -96847266 + (TG)n Simple_repeat Simple_repeat 2 42 0 574 161 45 0 chr6 92432288 92432400 -96847154 + MER63 DNA MER1_type 909 1025 -36 318 312 89 21 chr6 92432584 92432866 -96846688 - L1 LINE L1 -1098 5048 4748 4368 200 53 44 chr6 92433232 92434979 -96844575 - L1MB3 LINE L1 0 6183 4414 1893 116 14 4 chr6 92434979 92435297 -96844257 - AluSc SINE Alu 0 322 2 4368 200 53 44 chr6 92435297 92435683 -96843871 - L1MB3 LINE L1 -1769 4414 4033 1232 265 75 17 chr6 92435684 92436272 -96843282 - L1ME1 LINE L1 -2742 3640 3019 21 0 0 0 chr6 92436382 92436403 -96843151 + AT_rich Low_complexity Low_complexity 1 21 0 376 210 62 105 chr6 92436613 92436775 -96842779 - L1MA9 LINE L1 -33 6279 6125 1973 112 4 0 chr6 92436775 92437052 -96842502 + AluSx SINE Alu 1 278 -34 1953 186 26 13 chr6 92437075 92437457 -96842097 - L1MA9 LINE L1 -174 6138 5752 1217 262 21 23 chr6 92437459 92437890 -96841664 - L1ME1 LINE L1 -3368 3014 2585 691 246 12 0 chr6 92437893 92438060 -96841494 + L1PB4 LINE L1 5980 6148 -8 4163 164 52 35 chr6 92438118 92438792 -96840762 - L1ME1 LINE L1 -3884 2500 1896 1719 124 60 15 chr6 92438792 92439091 -96840463 + AluSg SINE Alu 3 313 0 4163 164 52 35 chr6 92439091 92439405 -96840149 - L1ME1 LINE L1 -4488 1896 1589 3569 186 8 0 chr6 92439407 92440057 -96839497 + L1PA16 LINE L1 5498 6152 -14 834 288 48 22 chr6 92440065 92440100 -96839454 - L1ME LINE L1 -3513 2567 2534 2019 144 93 18 chr6 92440100 92440496 -96839058 + MSTA LTR MaLR 1 426 -2 834 288 48 22 chr6 92440496 92440964 -96838590 - L1ME LINE L1 -3546 2534 2051 700 233 102 64 chr6 92440989 92441272 -96838282 + MLT1A1 LTR MaLR 1 294 -71 1357 273 88 50 chr6 92441289 92441917 -96837637 - L1ME LINE L1 -4534 1546 944 2278 132 79 17 chr6 92441917 92442320 -96837234 + MSTA LTR MaLR 1 428 0 1357 273 88 50 chr6 92442320 92443194 -96836360 - L1ME LINE L1 -5136 944 7 350 301 85 23 chr6 92443435 92443611 -96835943 - MIR SINE MIR -10 252 66 1216 241 32 88 chr6 92443712 92444247 -96835307 - MLT1D LTR MaLR 0 505 1 2419 60 7 0 chr6 92444854 92445154 -96834400 - AluY SINE Alu -9 302 1 225 212 30 30 chr6 92445431 92445497 -96834057 + (TATATG)n Simple_repeat Simple_repeat 1 66 0 285 310 52 44 chr6 92445811 92446051 -96833503 - L1P4 LINE L1 -425 5741 5497 2088 194 25 7 chr6 92447520 92447963 -96831591 - L1MC1 LINE L1 0 6613 6163 2933 236 34 19 chr6 92447987 92448849 -96830705 - L1MC1 LINE L1 -1538 4888 4014 889 224 35 39 chr6 92448849 92449081 -96830473 - AluJb SINE Alu -18 294 64 1625 273 89 38 chr6 92449083 92450391 -96829163 - L1MC1 LINE L1 -2404 4022 2597 41842 56 4 1 chr6 92450400 92456518 -96823036 - L1PA5 LINE L1 -7 6147 11 1921 190 69 8 chr6 92456553 92457093 -96822461 - L1MC1 LINE L1 -3947 2479 2011 1107 191 10 0 chr6 92457185 92457384 -96822170 - MER2 DNA MER2_type -144 201 1 4568 178 68 12 chr6 92457385 92458610 -96820944 - L1MC1 LINE L1 -4406 2020 626 225 0 48 48 chr6 92458610 92458652 -96820902 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 4568 178 68 12 chr6 92458652 92458710 -96820844 - L1MC1 LINE L1 -5800 626 573 381 257 9 28 chr6 92458719 92458828 -96820726 - L1MC1 LINE L1 -5817 609 503 2113 145 6 12 chr6 92458835 92459167 -96820387 + MER1B DNA MER1_type 8 337 -2 2275 225 14 21 chr6 92459168 92459653 -96819901 - L1MC1 LINE L1 -5943 483 2 263 273 107 13 chr6 92460008 92460158 -96819396 + L1ME4a LINE L1 5957 6120 -1 28 61 0 0 chr6 92460304 92460353 -96819201 + AT_rich Low_complexity Low_complexity 1 49 0 2653 232 95 12 chr6 92460799 92461570 -96817984 - L1ME2 LINE L1 -10 6154 5320 2401 25 0 3 chr6 92461591 92461874 -96817680 - L1PA4 LINE L1 -10 6145 5864 4521 34 0 0 chr6 92462106 92462661 -96816893 - L1PA4 LINE L1 -770 5376 4822 591 26 0 13 chr6 92462660 92462738 -96816816 + L1P1 LINE L1 5376 5452 -703 * 1275 20 0 7 chr6 92462723 92462873 -96816681 - L1P LINE L1 -1184 4962 4814 6606 20 7 0 chr6 92462873 92463638 -96815916 + L1PA3 LINE L1 5384 6155 0 29 28 0 0 chr6 92463849 92463885 -96815669 + AT_rich Low_complexity Low_complexity 1 36 0 513 327 69 59 chr6 92464490 92464793 -96814761 - MLT1H LTR MaLR -112 437 132 23 68 0 0 chr6 92465766 92465810 -96813744 + AT_rich Low_complexity Low_complexity 1 44 0 475 287 26 17 chr6 92465933 92466048 -96813506 + MER5B DNA MER1_type 4 119 -59 2857 181 123 2 chr6 92466070 92466661 -96812893 - LTR51 LTR ERV1 -8 663 1 862 202 27 0 chr6 92466719 92466902 -96812652 + MER5A DNA MER1_type 1 188 -1 246 197 33 0 chr6 92466977 92467038 -96812516 + L1ME1 LINE L1 6092 6154 -12 23 33 0 0 chr6 92467619 92467649 -96811905 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 92468697 92468718 -96810836 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr6 92468817 92468842 -96810712 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1323 216 41 11 chr6 92468845 92469113 -96810441 - AluJo SINE Alu -30 282 7 1670 204 47 15 chr6 92469402 92469808 -96809746 + LTR52 LTR ERVL 1 419 -2 21 36 0 0 chr6 92470392 92470420 -96809134 + AT_rich Low_complexity Low_complexity 1 28 0 291 303 123 13 chr6 92470555 92470710 -96808844 - MIR SINE MIR 0 262 91 289 330 0 34 chr6 92471185 92471303 -96808251 + L2 LINE L2 3192 3305 -8 6806 65 5 5 chr6 92473494 92475057 -96804497 + L1PA7 LINE L1 4591 6167 0 473 302 23 80 chr6 92476208 92476595 -96802959 + L1PA12 LINE L1 7 371 -7210 11395 226 15 10 chr6 92477376 92481552 -96798002 + L1PA12 LINE L1 2318 6522 -1062 487 260 184 54 chr6 92482067 92482344 -96797210 - MLT1J LTR MaLR -45 466 154 2297 211 22 39 chr6 92484075 92484990 -96794564 + L1MCb LINE L1 623 1535 -4849 * 3217 232 65 84 chr6 92484983 92485531 -96794023 - L1MDa LINE L1 -2199 4341 3784 180 0 0 0 chr6 92485531 92485551 -96794003 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3217 232 65 84 chr6 92485551 92485674 -96793880 - L1MDa LINE L1 -2756 3784 3660 1999 63 11 0 chr6 92485674 92485945 -96793609 - L1PA7 LINE L1 0 6154 5881 3217 232 65 84 chr6 92485945 92487107 -96792447 - L1MDa LINE L1 -2880 3660 2553 8440 201 13 2 chr6 92487260 92488868 -96790686 + L1PBa LINE L1 2 1627 -5236 5526 160 26 21 chr6 92488918 92490021 -96789533 + L1PB2 LINE L1 361 1457 -4747 2139 132 0 6 chr6 92490021 92490332 -96789222 - AluSq SINE Alu -4 309 1 5526 160 26 21 chr6 92490332 92490520 -96789034 + L1PB2 LINE L1 1457 1643 -4561 2140 145 13 24 chr6 92490520 92490899 -96788655 - THE1C LTR MaLR 0 375 1 5526 160 26 21 chr6 92490899 92491271 -96788283 + L1PB2 LINE L1 1643 2033 -4171 2091 139 73 14 chr6 92491271 92491615 -96787939 - THE1B LTR MaLR 0 364 1 9544 125 83 1 chr6 92491615 92493076 -96786478 - THE1B-int LTR MaLR 0 1580 1 2038 162 34 17 chr6 92493076 92493434 -96786120 - THE1B LTR MaLR 0 364 1 13088 194 28 20 chr6 92493434 92496599 -96782955 + L1PB2 LINE L1 2029 5225 -983 306 0 0 0 chr6 92496599 92496633 -96782921 + (GA)n Simple_repeat Simple_repeat 2 35 0 13088 194 28 20 chr6 92496633 92497622 -96781932 + L1PB2 LINE L1 5225 6205 -3 279 38 57 19 chr6 92498933 92498986 -96780568 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 401 343 35 0 chr6 92499027 92499170 -96780384 - MIR SINE MIR -108 154 7 28 0 0 0 chr6 92499846 92499874 -96779680 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr6 92500514 92500556 -96778998 + AT_rich Low_complexity Low_complexity 1 42 0 341 284 156 0 chr6 92501233 92501342 -96778212 + MIR SINE MIR 16 141 -67 23 54 0 0 chr6 92501470 92501507 -96778047 + AT_rich Low_complexity Low_complexity 1 37 0 323 266 16 48 chr6 92501865 92501989 -96777565 - L1ME3A LINE L1 -88 6082 5963 729 231 58 61 chr6 92502074 92502139 -96777415 - L1ME2 LINE L1 -10 6154 6090 1357 216 14 3 chr6 92502139 92502435 -96777119 + AluJo SINE Alu 1 299 -13 729 231 58 61 chr6 92502435 92502663 -96776891 - L1ME2 LINE L1 -74 6090 5862 313 312 57 7 chr6 92502663 92502804 -96776750 + L1ME LINE L1 754 901 -5169 22 0 0 0 chr6 92503106 92503128 -96776426 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 92503397 92503418 -96776136 + AT_rich Low_complexity Low_complexity 1 21 0 205 348 34 34 chr6 92503700 92503818 -96775736 + MIR3 SINE MIR 14 131 -77 246 173 40 0 chr6 92504368 92504443 -96775111 + (TA)n Simple_repeat Simple_repeat 1 78 0 226 170 0 21 chr6 92504843 92504890 -96774664 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 221 300 165 2 chr6 92505678 92505774 -96773780 + MIR SINE MIR 42 151 -57 32 26 0 0 chr6 92508000 92508039 -96771515 + AT_rich Low_complexity Low_complexity 1 39 0 24 77 0 0 chr6 92509351 92509403 -96770151 + AT_rich Low_complexity Low_complexity 1 52 0 493 308 79 13 chr6 92512047 92512425 -96767129 - L1MC4a LINE L1 -459 5662 5508 27 29 0 0 chr6 92512698 92512732 -96766822 + AT_rich Low_complexity Low_complexity 1 34 0 356 237 167 0 chr6 92513198 92513312 -96766242 + MER91B DNA MER1_type 5 137 -53 848 331 118 31 chr6 92513329 92514818 -96764736 - L1MC4a LINE L1 -2388 3758 2141 27 62 0 0 chr6 92514818 92514866 -96764688 + AT_rich Low_complexity Low_complexity 1 48 0 283 289 105 18 chr6 92515286 92515400 -96764154 - L2 LINE L2 0 3313 3190 1985 199 13 15 chr6 92515515 92515908 -96763646 + MSTD LTR MaLR 1 392 -4 237 83 0 0 chr6 92516077 92516113 -96763441 + (TG)n Simple_repeat Simple_repeat 1 36 0 2132 141 25 22 chr6 92516157 92516520 -96763034 + THE1B LTR MaLR 1 364 0 2188 98 3 0 chr6 92516665 92516971 -96762583 + AluY SINE Alu 1 307 -4 1700 96 109 48 chr6 92517128 92517449 -96762105 + AluSp SINE Alu 1 339 0 349 316 73 48 chr6 92517669 92517875 -96761679 + MIR SINE MIR 3 213 -49 23 0 0 0 chr6 92518424 92518447 -96761107 + AT_rich Low_complexity Low_complexity 1 23 0 34 24 0 0 chr6 92518628 92518669 -96760885 + AT_rich Low_complexity Low_complexity 1 41 0 286 332 50 18 chr6 92518991 92519211 -96760343 + HAL1 LINE L1 1404 1630 -877 198 0 0 0 chr6 92520167 92520189 -96759365 + (TTG)n Simple_repeat Simple_repeat 2 23 0 455 258 6 62 chr6 92620615 92620793 -96658761 + MLT1H LTR MaLR 382 549 0 2212 155 27 58 chr6 92621002 92621448 -96658106 + MSTB1 LTR MaLR 1 432 0 324 256 83 16 chr6 92622561 92622682 -96656872 + L1MC4 LINE L1 6858 6986 -1056 1041 259 25 7 chr6 92623173 92623455 -96656099 + MER90 LTR ERV1 327 613 -1 625 80 51 28 chr6 92623567 92623743 -96655811 + GA-rich Low_complexity Low_complexity 1 180 0 3280 185 40 19 chr6 92623864 92624936 -96654618 + L1M3 LINE L1 4576 5659 -521 841 144 29 7 chr6 92624946 92625085 -96654469 - Tigger3(Golem) DNA MER2_type 0 3029 2888 1251 121 0 0 chr6 92625149 92625323 -96654231 + AluSx SINE Alu 1 174 -138 225 0 0 0 chr6 92625701 92625726 -96653828 + (TG)n Simple_repeat Simple_repeat 2 26 0 368 278 83 58 chr6 92625727 92626040 -96653514 - L1M4 LINE L1 -1324 4822 4502 922 280 101 67 chr6 92626461 92627329 -96652225 - L1M4 LINE L1 -2185 3961 3064 2044 44 0 0 chr6 92627468 92627719 -96651835 + L1PA8 LINE L1 5807 6057 -115 9499 91 25 2 chr6 92627819 92629288 -96650266 + L1PBa LINE L1 1086 2730 -4133 5403 192 7 10 chr6 92629297 92630449 -96649105 + L1 LINE L1 2826 3973 -2889 306 302 99 33 chr6 92630583 92630765 -96648789 + MIR SINE MIR 13 206 -56 200 261 0 11 chr6 92630788 92630876 -96648678 + T-rich Low_complexity Low_complexity 1 87 0 27 0 0 0 chr6 92631246 92631273 -96648281 + AT_rich Low_complexity Low_complexity 1 27 0 841 232 11 6 chr6 92631366 92631543 -96648011 - MER5B DNA MER1_type 0 178 1 485 305 17 29 chr6 92631781 92631955 -96647599 + MIR3 SINE MIR 31 202 -6 504 298 0 0 chr6 92631980 92632094 -96647460 + MER5B DNA MER1_type 60 173 -5 21 0 0 0 chr6 92632449 92632470 -96647084 + AT_rich Low_complexity Low_complexity 1 21 0 658 234 57 21 chr6 92632857 92633049 -96646505 - MER3 DNA MER1_type -9 200 2 245 211 19 0 chr6 92633136 92633188 -96646366 + MIR SINE MIR 104 156 -106 1013 130 0 13 chr6 92633297 92633451 -96646103 + AluSx SINE Alu 157 308 -4 1330 143 15 0 chr6 92633580 92633783 -96645771 - MER7A DNA MER2_type -141 205 2 517 175 39 0 chr6 92633790 92633893 -96645661 + L1MB7 LINE L1 5678 5784 -390 1723 109 15 0 chr6 92633893 92634159 -96645395 + L1MA4 LINE L1 6024 6294 -6 2108 174 10 8 chr6 92634159 92634552 -96645002 + L1MB7 LINE L1 5773 6170 -14 604 309 91 31 chr6 92635441 92635794 -96643760 - MLT1J1 LTR MaLR -70 376 3 811 155 32 19 chr6 92636051 92636206 -96643348 + L1MD2 LINE L1 6169 6325 -34 537 208 27 28 chr6 92636431 92636566 -96642988 + MLT1F1 LTR MaLR 1 121 -446 2306 248 31 12 chr6 92636566 92637139 -96642415 + MLT1E2 LTR MaLR 1 584 -42 226 367 42 17 chr6 92637239 92637359 -96642195 + MER5A DNA MER1_type 61 183 -6 428 362 154 7 chr6 92638025 92638323 -96641231 - L3 LINE CR1 -6 1571 1230 834 93 16 132 chr6 92640045 92640227 -96639327 - MER20 DNA MER1_type -58 161 1 395 337 65 11 chr6 92640227 92640411 -96639143 - MIR SINE MIR -59 203 10 234 267 50 20 chr6 92640625 92640726 -96638828 - L3 LINE CR1 -811 766 663 3760 52 4 2 chr6 92641220 92641696 -96637858 - L1PA7 LINE L1 0 6154 5678 304 23 0 47 chr6 92641797 92641840 -96637714 + L1MC1 LINE L1 6287 6327 -6 490 330 123 46 chr6 92643146 92643689 -96635865 + L1ME4a LINE L1 4067 4651 -1495 762 191 50 150 chr6 92643728 92643878 -96635676 + L1ME1 LINE L1 1751 1914 -4482 3313 162 5 10 chr6 92643878 92644457 -96635097 + L1MB3 LINE L1 5607 6182 -1 762 191 50 150 chr6 92644457 92644747 -96634807 + L1ME1 LINE L1 1914 2147 -4249 761 213 115 0 chr6 92644751 92644995 -96634559 + L1ME1 LINE L1 2240 2511 -3704 2593 229 35 14 chr6 92645007 92645640 -96633914 + L1ME1 LINE L1 5428 6073 -162 240 200 0 33 chr6 92645748 92645808 -96633746 + L1MA10 LINE L1 6273 6330 -4 21 0 0 0 chr6 92645822 92645843 -96633711 + AT_rich Low_complexity Low_complexity 1 21 0 525 289 85 15 chr6 92646393 92646653 -96632901 + L1ME4a LINE L1 5600 5877 -244 1443 203 167 6 chr6 92646737 92647096 -96632458 - MER47B DNA MER2_type -1 417 1 457 317 117 39 chr6 92647739 92648020 -96631534 + L2 LINE L2 3011 3313 0 1095 211 44 52 chr6 92648435 92648705 -96630849 - AluSx SINE Alu -44 268 1 3063 161 64 2 chr6 92648845 92649424 -96630130 + L1MA8 LINE L1 5676 6290 -1 1105 243 91 35 chr6 92650077 92650419 -96629135 - LTR16C LTR ERVL -98 393 33 230 231 192 0 chr6 92652054 92652132 -96627422 + MIR3 SINE MIR 87 179 -29 1114 182 49 0 chr6 92653013 92653216 -96626338 + AluJo SINE Alu 3 215 -97 229 118 0 0 chr6 92653317 92653351 -96626203 - L1 LINE L1 -1592 4554 4521 611 234 8 0 chr6 92653528 92653652 -96625902 + L1ME4a LINE L1 5521 5645 -2163 271 102 0 68 chr6 92653659 92653718 -96625836 + L1MA2 LINE L1 6250 6304 0 522 230 153 50 chr6 92654160 92654499 -96625055 + L1ME4a LINE L1 5672 6045 -76 2385 56 10 10 chr6 92655272 92655574 -96623980 - AluY SINE Alu -9 302 1 383 222 0 44 chr6 92656233 92656323 -96623231 + L2 LINE L2 3186 3271 -1 464 305 89 32 chr6 92657612 92657802 -96621752 - MIR SINE MIR -60 202 2 242 86 29 0 chr6 92658611 92658646 -96620908 + MADE1 DNA Mariner 2 37 -43 794 280 35 0 chr6 92658649 92658849 -96620705 + MIR SINE MIR 32 238 -24 3080 134 68 0 chr6 92659695 92660355 -96619199 - L1PBa LINE L1 -3782 3080 2378 10310 146 21 27 chr6 92660649 92663180 -96616374 - L1MA4A LINE L1 -6 6297 3794 1483 176 85 18 chr6 92663180 92663452 -96616102 - AluJo SINE Alu -22 290 1 10310 146 21 27 chr6 92663452 92663976 -96615578 - L1MA4A LINE L1 -2509 3794 3268 1069 246 65 9 chr6 92665128 92665465 -96614089 + L1ME3A LINE L1 5807 6162 -8 208 294 185 0 chr6 92665801 92665893 -96613661 - MIR SINE MIR -81 127 19 333 0 0 0 chr6 92666778 92666815 -96612739 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2339 4 0 0 chr6 92666815 92667074 -96612480 - L1PA3 LINE L1 -16 6139 5881 7601 175 12 3 chr6 92667899 92670116 -96609438 - L1PB1 LINE L1 -201 6666 4429 397 122 40 0 chr6 92670224 92670298 -96609256 - L1PB1 LINE L1 -5015 1848 1772 2055 169 69 6 chr6 92670306 92671159 -96608395 - L1PB1 LINE L1 -5185 1678 628 1413 227 67 45 chr6 92671203 92671737 -96607817 - L1PB1 LINE L1 -6312 551 6 792 259 107 29 chr6 92672151 92672574 -96606980 - LTR33 LTR ERVL -9 512 5 198 0 0 0 chr6 92673901 92673923 -96605631 + (A)n Simple_repeat Simple_repeat 1 22 0 250 323 78 65 chr6 92674928 92675145 -96604409 - MIR SINE MIR -30 232 13 729 325 67 50 chr6 92675340 92675804 -96603750 - LTR16C LTR ERVL -19 472 1 193 128 43 0 chr6 92675839 92675886 -96603668 + GA-rich Low_complexity Low_complexity 4 52 0 499 269 81 27 chr6 92675888 92676074 -96603480 - MIR SINE MIR -61 201 6 332 353 161 12 chr6 92677231 92677486 -96602068 + L2 LINE L2 2980 3272 0 277 282 96 10 chr6 92677533 92677662 -96601892 + MIR SINE MIR 1 136 -72 344 297 0 0 chr6 92680193 92680284 -96599270 - L1MC4 LINE L1 -1338 6704 6614 214 171 0 0 chr6 92680285 92680320 -96599234 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2845 209 2 2 chr6 92680441 92681026 -96598528 - L1 LINE L1 -3207 2939 2355 1759 179 101 30 chr6 92681348 92681606 -96597948 - MLT1C LTR MaLR -1 466 163 1994 149 0 7 chr6 92681606 92681914 -96597640 - AluSx SINE Alu -1 311 6 1759 179 101 30 chr6 92681914 92682090 -96597464 - MLT1C LTR MaLR -304 163 1 23 0 0 0 chr6 92683497 92683520 -96596034 + AT_rich Low_complexity Low_complexity 1 23 0 237 146 61 110 chr6 92684801 92684883 -96594671 - L1MC4 LINE L1 -1313 6729 6652 220 235 0 20 chr6 92684883 92684934 -96594620 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 329 235 0 78 chr6 92684940 92685042 -96594512 - L1MC4 LINE L1 -1339 6703 6610 202 254 0 48 chr6 92686196 92686259 -96593295 + (TA)n Simple_repeat Simple_repeat 2 61 0 254 297 36 41 chr6 92688756 92688886 -96590668 - MIR SINE MIR -63 145 10 1098 208 28 9 chr6 92689211 92689427 -96590127 + MER58A DNA MER1_type 1 220 -4 191 386 50 34 chr6 92690407 92690785 -96588769 - L2 LINE L2 -400 2914 2531 865 317 67 9 chr6 92691231 92691559 -96587995 - LTR16C LTR ERVL -62 429 83 865 181 48 12 chr6 92692374 92692540 -96587014 + MIR SINE MIR 66 237 -25 570 293 110 12 chr6 92692682 92692928 -96586626 + L3 LINE CR1 1303 1572 -5 426 119 0 15 chr6 92694381 92694448 -96585106 - AluS SINE Alu -237 66 1 2572 82 11 3 chr6 92694868 92695222 -96584332 + L1PA14 LINE L1 5805 6161 0 811 104 0 0 chr6 92697346 92697452 -96582102 + U6 snRNA snRNA 2 107 0 2442 199 0 11 chr6 92697452 92697991 -96581563 + L1P LINE L1 3011 3543 -2603 182 65 65 22 chr6 92698091 92698137 -96581417 + GA-rich Low_complexity Low_complexity 1 48 0 313 131 0 49 chr6 92699153 92699214 -96580340 + L1MA7 LINE L1 6210 6267 -24 991 146 0 45 chr6 92699270 92699448 -96580106 + MER2 DNA MER2_type 41 210 -135 2039 136 0 3 chr6 92699489 92699783 -96579771 - AluSx SINE Alu -19 293 1 280 206 238 0 chr6 92699803 92699866 -96579688 + MER2 DNA MER2_type 268 345 0 216 0 0 0 chr6 92699876 92699900 -96579654 + (A)n Simple_repeat Simple_repeat 1 24 0 2546 262 72 36 chr6 92700676 92701662 -96577892 - L1ME3A LINE L1 -21 6132 5069 816 154 0 0 chr6 92701662 92701785 -96577769 + FLAM_A SINE Alu 1 123 -10 2546 262 72 36 chr6 92701785 92702224 -96577330 - L1ME3A LINE L1 -1084 5069 4647 815 256 103 40 chr6 92702228 92702673 -96576881 - L1ME3A LINE L1 -2228 3901 3429 1524 282 131 14 chr6 92702681 92703845 -96575709 - L1MEd LINE L1 -2779 3350 2097 426 282 100 43 chr6 92703864 92704165 -96575389 - L1MEd LINE L1 -3995 2134 1817 566 262 67 61 chr6 92704362 92704966 -96574588 - L1MEd LINE L1 -4757 1553 926 298 244 26 0 chr6 92705929 92706007 -96573547 + L1ME3A LINE L1 6082 6161 -9 1011 260 91 31 chr6 92706223 92706639 -96572915 - L1ME3A LINE L1 -214 5939 5499 331 314 118 34 chr6 92706661 92707043 -96572511 - L1ME3A LINE L1 -3572 2557 2144 22 70 0 0 chr6 92707063 92707106 -96572448 + AT_rich Low_complexity Low_complexity 1 43 0 2284 92 0 13 chr6 92707248 92707551 -96572003 - AluSg SINE Alu -11 299 1 404 298 40 40 chr6 92707833 92708280 -96571274 - L1MEd LINE L1 -938 1552 1075 2579 56 0 0 chr6 92708416 92708718 -96570836 + AluY SINE Alu 1 302 -9 1249 301 48 5 chr6 92709202 92709598 -96569956 - LTR16C LTR ERVL 0 491 79 2281 95 0 22 chr6 92710629 92710946 -96568608 - AluSx SINE Alu 0 312 3 22 0 0 0 chr6 92711382 92711404 -96568150 + AT_rich Low_complexity Low_complexity 1 22 0 1935 118 7 0 chr6 92711404 92711675 -96567879 - AluSx SINE Alu -39 273 1 1084 164 21 5 chr6 92713738 92714028 -96565526 + L1M3 LINE L1 5176 5472 -743 2994 157 6 24 chr6 92714030 92714421 -96565133 - L1PA16 LINE L1 -1 6165 5785 1584 131 13 0 chr6 92714421 92714658 -96564896 - AluSx SINE Alu -9 303 64 2994 157 6 24 chr6 92714658 92714802 -96564752 - L1PA16 LINE L1 -381 5785 5640 1029 146 18 6 chr6 92714961 92715132 -96564422 - L1PA16 LINE L1 -526 5640 5468 1920 143 21 9 chr6 92715132 92715461 -96564093 + L1M3 LINE L1 5461 5793 -375 3849 239 40 34 chr6 92715466 92716727 -96562827 - L1M4 LINE L1 -996 5150 3883 3623 160 22 0 chr6 92716754 92717355 -96562199 - L1MC2 LINE L1 -285 6059 5446 922 164 0 6 chr6 92717375 92717540 -96562014 + L1PBa LINE L1 6 169 -6694 1679 164 92 3 chr6 92717549 92717885 -96561669 + L1PBa LINE L1 658 1023 -5840 311 294 115 28 chr6 92718148 92718434 -96561120 - L1MEd LINE L1 -4905 1214 904 1006 126 0 0 chr6 92718950 92719093 -96560461 - AluJb SINE Alu 0 312 170 284 328 82 8 chr6 92719406 92719528 -96560026 - MIR SINE MIR -5 257 127 5532 122 30 10 chr6 92719871 92720760 -96558794 - L1PA16 LINE L1 -2 6164 5258 1169 223 151 50 chr6 92720934 92721370 -96558184 + L1ME3 LINE L1 5636 6115 -47 262 248 64 50 chr6 92721271 92721412 -96558142 + L1MA10 LINE L1 6180 6322 -12 * 255 114 0 0 chr6 92721447 92721482 -96558072 - MER58 DNA MER1_type 0 2420 2386 493 139 65 28 chr6 92721583 92721691 -96557863 - MER58 DNA MER1_type -2264 156 45 231 123 0 154 chr6 92724410 92724475 -96555079 - MLT1F LTR MaLR 0 542 488 552 105 114 53 chr6 92725047 92725161 -96554393 - MER3 DNA MER1_type -5 204 84 5583 132 42 15 chr6 92725161 92727052 -96552502 + L1MA8 LINE L1 4133 6237 -54 2079 88 4 4 chr6 92727052 92727315 -96552239 + AluSx SINE Alu 34 296 -16 5583 132 42 15 chr6 92727315 92727362 -96552192 + L1MA8 LINE L1 6237 6281 -10 278 245 0 0 chr6 92727661 92727714 -96551840 - MER3 DNA MER1_type -109 100 48 425 254 63 83 chr6 92727720 92727798 -96551756 + L2 LINE L2 3113 3191 -122 2149 191 59 41 chr6 92727798 92728289 -96551265 + MLT1D LTR MaLR 4 503 -2 425 254 63 83 chr6 92728289 92728415 -96551139 + L2 LINE L2 3191 3313 0 266 150 0 17 chr6 92728551 92728611 -96550943 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 250 296 59 44 chr6 92728697 92728832 -96550722 - MIR SINE MIR -55 207 71 25 51 0 0 chr6 92729173 92729212 -96550342 + AT_rich Low_complexity Low_complexity 1 39 0 450 204 10 10 chr6 92729243 92729346 -96550208 + MER58 DNA MER1_type 2317 2419 -1 345 47 0 0 chr6 92729612 92729655 -96549899 + (CAT)n Simple_repeat Simple_repeat 2 44 0 9364 176 7 3 chr6 92729967 92731737 -96547817 + L1PA13 LINE L1 3626 5402 -744 2560 89 3 0 chr6 92731736 92732095 -96547459 - L1P LINE L1 -1396 4750 4391 * 7260 44 9 0 chr6 92732099 92732990 -96546564 + L1PA7 LINE L1 5254 6152 -2 4971 122 7 10 chr6 92732990 92733759 -96545795 + L1PA13 LINE L1 5393 6158 -5 194 227 91 30 chr6 92733798 92733864 -96545690 - L2 LINE L2 0 3313 3244 606 221 13 0 chr6 92733864 92734013 -96545541 + L1 LINE L1 4761 4911 -1235 204 221 78 26 chr6 92734013 92734090 -96545464 - L2 LINE L2 -84 3229 3149 1124 229 0 0 chr6 92734098 92734334 -96545220 + MER2 DNA MER2_type 8 243 -102 379 279 63 18 chr6 92735023 92735134 -96544420 - MIR3 SINE MIR -15 193 78 34 42 0 0 chr6 92735977 92736025 -96543529 + AT_rich Low_complexity Low_complexity 1 48 0 286 278 66 63 chr6 92736025 92736382 -96543172 + MLT1H LTR MaLR 104 549 0 234 188 45 54 chr6 92737012 92737124 -96542430 + (CATA)n Simple_repeat Simple_repeat 1 111 0 21 0 0 0 chr6 92739824 92739845 -96539709 + AT_rich Low_complexity Low_complexity 1 21 0 852 294 199 27 chr6 92740142 92740585 -96538969 + LTR33 LTR ERVL 1 519 -2 2057 241 48 65 chr6 92740636 92740799 -96538755 + MLT1E LTR MaLR 1 165 -428 2287 127 117 8 chr6 92740799 92741185 -96538369 + MSTA LTR MaLR 1 428 0 2057 241 48 65 chr6 92741185 92741624 -96537930 + MLT1E LTR MaLR 165 593 0 416 323 49 62 chr6 92742333 92742658 -96536896 + MLT1I LTR MaLR 89 409 0 323 345 119 36 chr6 92743242 92743995 -96535559 + L2 LINE L2 2038 2853 -461 817 198 6 39 chr6 92744608 92744790 -96534764 + MER3 DNA MER1_type 13 188 -21 494 198 222 0 chr6 92744832 92744958 -96534596 + MER5A DNA MER1_type 35 188 -1 338 320 41 0 chr6 92745218 92745340 -96534214 - L2 LINE L2 -5 3267 3141 2220 116 0 7 chr6 92745446 92745747 -96533807 + AluSg SINE Alu 1 299 -11 933 194 22 57 chr6 92745825 92746052 -96533502 + MER20 DNA MER1_type 1 219 0 186 246 31 46 chr6 92746444 92746509 -96533045 - MER5B DNA MER1_type -5 173 110 2517 138 111 62 chr6 92748826 92749005 -96530549 + LTR38 LTR ERV1 1 170 -386 2174 113 10 0 chr6 92749005 92749297 -96530257 + AluSx SINE Alu 13 307 -5 2517 138 111 62 chr6 92749297 92749647 -96529907 + LTR38 LTR ERV1 170 556 0 2545 130 25 0 chr6 92750777 92751170 -96528384 + L1MC1 LINE L1 5826 6228 -105 837 262 61 4 chr6 92851787 92852016 -96427538 + L1MC4 LINE L1 7348 7589 -453 4964 30 5 0 chr6 92852033 92852623 -96426931 - L1PA4 LINE L1 -3 6152 5560 2068 73 4 11 chr6 92852640 92852914 -96426640 + AluY SINE Alu 1 272 -39 268 240 40 40 chr6 92852944 92853069 -96426485 + L1MC4 LINE L1 7918 8042 0 247 316 103 8 chr6 92853207 92853324 -96426230 + MIR3 SINE MIR 30 157 -51 26 30 0 0 chr6 92853608 92853641 -96425913 + AT_rich Low_complexity Low_complexity 1 33 0 11582 113 6 11 chr6 92853700 92854008 -96425546 + L1P LINE L1 3288 3596 -2550 6975 63 0 0 chr6 92854008 92855066 -96424488 - L1PA6 LINE L1 -2 6152 5095 11582 113 6 11 chr6 92855066 92856563 -96422991 + L1PA6 LINE L1 3596 5084 -1062 6182 197 27 10 chr6 92856562 92857403 -96422151 + L1MA9 LINE L1 3545 4420 -1726 * 2041 102 7 3 chr6 92857403 92857719 -96421835 + AluSx SINE Alu 1 317 0 6182 197 27 10 chr6 92857719 92858219 -96421335 + L1MA9 LINE L1 4420 4910 -1236 1222 238 54 65 chr6 92858221 92858649 -96420905 - MLT2B3 LTR ERVL 0 554 132 3571 157 30 11 chr6 92858652 92858884 -96420670 + L1MA9 LINE L1 5408 5634 -678 408 40 0 0 chr6 92858884 92858934 -96420620 + (TA)n Simple_repeat Simple_repeat 1 50 0 189 0 0 0 chr6 92858933 92858954 -96420600 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 3571 157 30 11 chr6 92858934 92859382 -96420172 + L1MA9 LINE L1 5634 6081 -231 516 173 48 0 chr6 92859386 92859490 -96420064 + L1MA9 LINE L1 6182 6290 -22 28 22 0 22 chr6 92859553 92859580 -96419974 + AT_rich Low_complexity Low_complexity 1 28 -17 1558 201 0 24 chr6 92859580 92859873 -96419681 + AluJo SINE Alu 5 290 -22 28 22 0 22 chr6 92859873 92859891 -96419663 + AT_rich Low_complexity Low_complexity 28 45 0 221 109 22 0 chr6 92859903 92859949 -96419605 + (TA)n Simple_repeat Simple_repeat 1 47 0 2120 101 0 3 chr6 92860627 92860913 -96418641 + AluSc SINE Alu 15 299 -10 411 271 30 38 chr6 92862679 92862812 -96416742 - L2 LINE L2 0 3313 3182 2519 207 37 19 chr6 92863176 92863717 -96415837 - L1MB5 LINE L1 -14 6396 5846 4450 236 44 30 chr6 92863751 92865427 -96414127 - L1MB5 LINE L1 -2472 3910 2195 437 202 28 0 chr6 92865424 92865533 -96414021 - L1MA5 LINE L1 0 6300 6189 * 285 315 0 0 chr6 92865581 92865673 -96413881 - L1ME2 LINE L1 -42 6122 6031 25 51 0 0 chr6 92866265 92866304 -96413250 + AT_rich Low_complexity Low_complexity 1 39 0 3162 93 20 2 chr6 92868565 92869025 -96410529 + L1PA13 LINE L1 5694 6161 -2 3314 37 2 0 chr6 92869843 92870245 -96409309 - L1P LINE L1 -1940 4206 3804 740 104 0 0 chr6 92870552 92870658 -96408896 - AluSp/q SINE Alu -2 311 206 243 121 52 0 chr6 92872138 92872196 -96407358 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 204 213 28 37 chr6 92872196 92872304 -96407250 + (TATAA)n Simple_repeat Simple_repeat 3 109 0 236 120 65 11 chr6 92872326 92872418 -96407136 + (TA)n Simple_repeat Simple_repeat 2 98 0 324 0 0 0 chr6 92872791 92872827 -96406727 + (CA)n Simple_repeat Simple_repeat 2 37 0 31 0 0 0 chr6 92873279 92873310 -96406244 + AT_rich Low_complexity Low_complexity 1 31 0 240 86 0 0 chr6 92875072 92875107 -96404447 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 475 312 40 30 chr6 92875592 92875794 -96403760 + LTR67 LTR ERVL 354 557 0 21 36 0 0 chr6 92875889 92875917 -96403637 + AT_rich Low_complexity Low_complexity 1 28 0 252 250 110 0 chr6 92875921 92876021 -96403533 + L2 LINE L2 3116 3226 -87 195 245 85 64 chr6 92876152 92876246 -96403308 + MIR SINE MIR 167 262 0 237 268 0 14 chr6 92876257 92876328 -96403226 + (TA)n Simple_repeat Simple_repeat 2 71 0 692 287 46 10 chr6 92876620 92876815 -96402739 + MIR SINE MIR 14 215 -47 22 0 0 0 chr6 92877125 92877147 -96402407 + AT_rich Low_complexity Low_complexity 1 22 0 28 71 0 0 chr6 92877553 92877609 -96401945 + AT_rich Low_complexity Low_complexity 1 56 0 501 120 52 4 chr6 92878247 92878359 -96401195 - L1MA7 LINE L1 -8 6304 6183 238 363 65 0 chr6 92878521 92878645 -96400909 - MIR SINE MIR -23 239 108 1187 189 37 88 chr6 92879155 92879562 -96399992 - Charlie5 DNA MER1_type 0 2619 2234 541 198 52 9 chr6 92879564 92879680 -96399874 - Charlie5 DNA MER1_type -2491 121 1 259 109 22 0 chr6 92879747 92879793 -96399761 + MADE1 DNA Mariner 1 47 -33 351 317 90 36 chr6 92880501 92880668 -96398886 - MIR SINE MIR -26 236 61 654 345 97 50 chr6 92880672 92881555 -96397999 + L3 LINE CR1 634 1558 -19 207 0 0 0 chr6 92882311 92882334 -96397220 + (A)n Simple_repeat Simple_repeat 1 23 0 258 274 0 27 chr6 92882861 92882934 -96396620 + CT-rich Low_complexity Low_complexity 2 72 0 24 0 0 0 chr6 92883128 92883152 -96396402 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 92885724 92885746 -96393808 + AT_rich Low_complexity Low_complexity 1 22 0 262 286 36 0 chr6 92886128 92886212 -96393342 + GA-rich Low_complexity Low_complexity 2 88 0 21 36 0 0 chr6 92887924 92887952 -96391602 + AT_rich Low_complexity Low_complexity 1 28 0 2035 153 0 0 chr6 92887957 92888245 -96391309 + AluSx SINE Alu 1 288 -24 24 0 0 0 chr6 92889093 92889117 -96390437 + AT_rich Low_complexity Low_complexity 1 24 0 334 208 0 42 chr6 92889252 92889324 -96390230 + Tigger5 DNA MER2_type 1 69 -2254 * 1052 190 21 17 chr6 92889323 92889560 -96389994 + Tigger5 DNA MER2_type 2077 2314 -9 1751 270 69 15 chr6 92889624 92890354 -96389200 + L1M3d LINE L1 6 1091 -5562 4705 252 43 24 chr6 92890478 92892068 -96387486 + L1M3de LINE L1 865 2125 -4528 838 123 0 0 chr6 92892066 92892204 -96387350 + L1MA2 LINE L1 6075 6212 -92 * 3021 181 11 47 chr6 92892204 92892928 -96386626 + L1MA6 LINE L1 5601 6298 -2 420 318 108 40 chr6 92893079 92893478 -96386076 + L1ME4a LINE L1 5527 5952 -169 336 188 47 23 chr6 92893496 92893624 -96385930 + (TA)n Simple_repeat Simple_repeat 2 132 0 1265 227 57 52 chr6 92893668 92894056 -96385498 + MLT1B LTR MaLR 1 390 0 326 326 56 22 chr6 92894058 92894236 -96385318 + L1MC4a LINE L1 5682 5865 -1943 32 26 0 0 chr6 92894448 92894487 -96385067 + AT_rich Low_complexity Low_complexity 1 39 0 269 158 18 18 chr6 92894518 92894575 -96384979 - tRNA-Met-e tRNA tRNA -17 58 2 4206 171 39 63 chr6 92894575 92896648 -96382906 + L1PA16 LINE L1 4121 6165 -1 22 94 0 0 chr6 92896648 92896712 -96382842 + AT_rich Low_complexity Low_complexity 1 64 0 798 249 46 31 chr6 92896809 92897134 -96382420 - L1ME3A LINE L1 -1 6169 5840 1265 214 56 45 chr6 92897314 92897673 -96381881 + MLT1A1 LTR MaLR 1 363 -2 1189 174 17 39 chr6 92898391 92898621 -96380933 + AluJb SINE Alu 49 273 -39 210 266 31 0 chr6 92898629 92898693 -96380861 + L2 LINE L2 3175 3240 -32 416 206 7 59 chr6 92898837 92898973 -96380581 - L1MC4 LINE L1 0 8042 7914 25 31 0 0 chr6 92899035 92899067 -96380487 + AT_rich Low_complexity Low_complexity 1 32 0 660 261 63 17 chr6 92899080 92899318 -96380236 - L1MC4 LINE L1 -158 7884 7636 479 206 9 0 chr6 92899982 92900089 -96379465 + L1M4 LINE L1 4132 4239 -1907 1074 203 100 43 chr6 92900101 92900133 -96379421 + L1M4 LINE L1 5254 5283 -895 1962 125 14 4 chr6 92900133 92900449 -96379105 - AluSg SINE Alu 0 319 1 1074 203 100 43 chr6 92900449 92900764 -96378790 + L1M4 LINE L1 5283 5622 -556 336 130 0 0 chr6 92900775 92900844 -96378710 + (TA)n Simple_repeat Simple_repeat 2 70 0 1276 255 55 31 chr6 92900854 92900968 -96378586 + L1MDa LINE L1 2426 2536 -4004 2099 125 3 0 chr6 92900968 92901257 -96378297 + AluSc SINE Alu 1 290 -19 1276 255 55 31 chr6 92901257 92901775 -96377779 + L1MDa LINE L1 2536 3076 -3464 305 158 18 0 chr6 92901820 92901877 -96377677 - L1M4 LINE L1 -2570 3576 3519 319 138 31 0 chr6 92901880 92901945 -96377609 + L1MD2 LINE L1 6289 6355 -4 201 108 0 0 chr6 92902097 92902134 -96377420 + (A)n Simple_repeat Simple_repeat 1 37 0 1686 112 61 54 chr6 92902342 92902637 -96376917 - AluSx SINE Alu -15 297 1 372 330 173 36 chr6 92902770 92903209 -96376345 + L2 LINE L2 2228 2726 -588 713 246 41 0 chr6 92903444 92903615 -96375939 - MER45A DNA AcHobo 0 178 1 1270 191 0 9 chr6 92903971 92904196 -96375358 - AluJb SINE Alu 0 312 90 491 332 19 13 chr6 92904202 92904518 -96375036 - L1MCc LINE L1 -4974 1449 1132 813 310 45 40 chr6 92904915 92905360 -96374194 - L1MCc LINE L1 -5954 469 23 404 63 63 11 chr6 92906629 92906724 -96372830 + (TA)n Simple_repeat Simple_repeat 2 101 0 308 122 0 0 chr6 92906956 92907005 -96372549 + Alu SINE Alu 248 296 -6 23 0 0 0 chr6 92907013 92907036 -96372518 + AT_rich Low_complexity Low_complexity 1 23 0 575 223 33 0 chr6 92908229 92908350 -96371204 + FLAM_C SINE Alu 1 125 -8 330 26 0 0 chr6 92909617 92909656 -96369898 + (TG)n Simple_repeat Simple_repeat 2 40 0 2546 65 0 0 chr6 92910892 92911202 -96368352 + AluY SINE Alu 2 311 0 862 311 106 20 chr6 92911259 92911893 -96367661 - L2 LINE L2 -5 3308 2607 240 35 0 0 chr6 92912321 92912350 -96367204 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7362 40 3 0 chr6 92912790 92914484 -96365070 - L1PA5 LINE L1 -2 6152 4455 5940 85 2 14 chr6 92914543 92915332 -96364222 + LTR17 LTR ERV1 1 780 0 28685 58 16 14 chr6 92915332 92919196 -96360358 + HERV17 LTR ERV1 1 3873 -4753 15307 53 7 0 chr6 92919196 92921141 -96358413 + HERV17 LTR ERV1 4061 6019 -2607 255 103 0 0 chr6 92921134 92921173 -96358381 + HERV17 LTR ERV1 7510 7548 -1078 * 2262 69 0 0 chr6 92921153 92921455 -96358099 + HERV17 LTR ERV1 6836 8626 0 571 56 0 0 chr6 92921455 92921527 -96358027 + LTR17 LTR ERV1 1 72 -708 2569 105 60 19 chr6 92921527 92921957 -96357597 - LTR7 LTR ERV1 -2 448 1 2332 83 59 13 chr6 92921957 92922330 -96357224 - HERVH LTR ERV1 0 7713 7324 1291 129 18 5 chr6 92922330 92922547 -96357007 - HERVH LTR ERV1 -1894 5819 5600 997 8 0 0 chr6 92922590 92922710 -96356844 - L1PA3 LINE L1 -1101 5045 4926 * 7207 21 0 8 chr6 92922706 92923801 -96355753 + L1PA3 LINE L1 5050 6135 -20 3944 143 0 2 chr6 92923809 92924439 -96355115 - HERVH LTR ERV1 -2597 5116 4488 19619 85 114 86 chr6 92924441 92928324 -96351230 - HERVH LTR ERV1 -3720 3993 1 2639 95 58 21 chr6 92928326 92928758 -96350796 - LTR7 LTR ERV1 -2 448 1 5091 85 4 15 chr6 92928758 92929477 -96350077 + LTR17 LTR ERV1 66 776 -4 191 303 0 50 chr6 92929477 92929576 -96349978 - L2 LINE L2 -669 2645 2552 4605 143 9 0 chr6 92929618 92930256 -96349298 - L1PA16 LINE L1 -9 6157 5483 180 0 0 0 chr6 92930256 92930276 -96349278 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4605 143 9 0 chr6 92930276 92930594 -96348960 - L1PA16 LINE L1 -683 5483 5169 208 338 154 30 chr6 92930621 92930855 -96348699 - L2 LINE L2 -785 2529 2267 23 0 0 0 chr6 92931706 92931729 -96347825 + AT_rich Low_complexity Low_complexity 1 23 0 182 283 33 17 chr6 92932122 92932182 -96347372 - MIR SINE MIR -138 124 64 291 351 21 52 chr6 92932452 92932643 -96346911 + MIR3 SINE MIR 9 193 -15 202 229 0 36 chr6 92934529 92934612 -96344942 + CT-rich Low_complexity Low_complexity 1 80 0 329 267 50 10 chr6 92934687 92934788 -96344766 + L2 LINE L2 3208 3312 -1 409 273 22 50 chr6 92934879 92935018 -96344536 + MER5A DNA MER1_type 24 158 -31 1554 157 75 77 chr6 92935096 92935472 -96344082 - THE1C LTR MaLR 0 375 1 2430 208 24 11 chr6 92936792 92937335 -96342219 - MER89 LTR ERV1 -9 550 1 414 305 9 0 chr6 92937345 92937450 -96342104 + MER5A DNA MER1_type 4 109 -80 32 43 0 0 chr6 92938778 92938824 -96340730 + AT_rich Low_complexity Low_complexity 1 46 0 210 237 34 0 chr6 92940876 92940935 -96338619 + (CATA)n Simple_repeat Simple_repeat 4 64 0 279 0 0 0 chr6 92941583 92941614 -96337940 + (A)n Simple_repeat Simple_repeat 1 31 0 7696 21 0 0 chr6 92942626 92943553 -96336001 - L1PA3 LINE L1 0 6155 5230 1738 28 0 0 chr6 92943558 92943772 -96335782 + L1PA3 LINE L1 5022 5235 -911 357 349 26 47 chr6 92945176 92945368 -96334186 + MER5A DNA MER1_type 2 189 0 1707 189 0 10 chr6 92945424 92945720 -96333834 + AluJb SINE Alu 6 298 -14 528 331 107 54 chr6 92946417 92947155 -96332399 - L3 LINE CR1 -111 1466 690 310 268 47 111 chr6 92947452 92947687 -96331867 - L2 LINE L2 0 3313 3094 23 33 0 0 chr6 92948214 92948244 -96331310 + AT_rich Low_complexity Low_complexity 1 30 0 1088 228 100 28 chr6 92950635 92950955 -96328599 + MER2 DNA MER2_type 2 344 -1 22 70 0 0 chr6 92951448 92951491 -96328063 + AT_rich Low_complexity Low_complexity 1 43 0 9473 116 9 7 chr6 92951741 92953165 -96326389 + L1PA8A LINE L1 3942 5361 -770 2037 116 3 20 chr6 92953165 92953467 -96326087 + AluSc SINE Alu 1 297 -12 9473 116 9 7 chr6 92953467 92954208 -96325346 + L1PA8A LINE L1 5361 6110 -21 189 0 0 0 chr6 92954208 92954229 -96325325 + (TTG)n Simple_repeat Simple_repeat 2 22 0 9473 116 9 7 chr6 92954229 92954250 -96325304 + L1PA8A LINE L1 6110 6129 -2 297 331 0 0 chr6 92955986 92956128 -96323426 - L1MCa LINE L1 -5216 829 688 184 29 29 29 chr6 92956387 92956421 -96323133 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 428 303 116 41 chr6 92956429 92956905 -96322649 - L1MCa LINE L1 -5552 493 42 1573 92 5 5 chr6 92957731 92957948 -96321606 + AluSq SINE Alu 94 310 -3 24 0 0 0 chr6 92958170 92958194 -96321360 + AT_rich Low_complexity Low_complexity 1 24 0 303 155 0 0 chr6 92958208 92958266 -96321288 - L1MA4A LINE L1 -4 6299 6242 882 296 168 12 chr6 92961080 92961672 -96317882 + L2 LINE L2 2614 3313 0 32 43 0 0 chr6 92962066 92962112 -96317442 + AT_rich Low_complexity Low_complexity 1 46 0 250 335 85 40 chr6 92962123 92962347 -96317207 + MIR SINE MIR 12 245 -17 246 62 0 0 chr6 92963253 92963285 -96316269 + (TA)n Simple_repeat Simple_repeat 1 32 0 26 50 0 0 chr6 92963360 92963400 -96316154 + AT_rich Low_complexity Low_complexity 1 40 0 330 26 0 0 chr6 92963586 92963625 -96315929 + (CA)n Simple_repeat Simple_repeat 2 40 0 747 247 40 58 chr6 92963638 92963913 -96315641 + L1MD3 LINE L1 6677 6946 -1049 * 1303 197 24 73 chr6 92963888 92964258 -96315296 + L1MD3 LINE L1 7634 7985 -10 383 380 0 0 chr6 92964625 92964738 -96314816 - L2 LINE L2 -6 3266 3154 901 131 110 0 chr6 92965307 92965498 -96314056 - L1MA3 LINE L1 0 6305 6094 3570 199 21 21 chr6 92965514 92966334 -96313220 - L1 LINE L1 -1608 4538 3719 818 267 14 18 chr6 92966540 92966757 -96312797 + MIR SINE MIR 47 262 0 609 262 78 5 chr6 92967648 92967839 -96311715 - MIR SINE MIR -5 257 53 327 300 41 93 chr6 92968428 92968771 -96310783 + L1M4 LINE L1 3775 4099 -2047 1392 147 119 78 chr6 92968809 92969169 -96310385 + THE1C LTR MaLR 1 375 0 8365 161 22 43 chr6 92969171 92970783 -96308771 + THE1C-int LTR MaLR 3 1579 -1 821 170 241 27 chr6 92970784 92970957 -96308597 + THE1C LTR MaLR 1 136 -292 219 36 0 0 chr6 92970957 92970985 -96308569 + (TC)n Simple_repeat Simple_repeat 1 28 0 821 170 241 27 chr6 92970985 92971035 -96308519 + THE1C LTR MaLR 136 272 -156 341 303 34 11 chr6 92971276 92971451 -96308103 + L1M4 LINE L1 4443 4621 -1525 343 243 81 27 chr6 92972239 92972350 -96307204 + L2 LINE L2 3196 3312 -1 213 125 0 47 chr6 92972629 92972693 -96306861 + (TA)n Simple_repeat Simple_repeat 2 62 0 23 0 0 0 chr6 92972694 92972717 -96306837 + AT_rich Low_complexity Low_complexity 1 23 0 423 98 0 0 chr6 92973096 92973157 -96306397 + (TA)n Simple_repeat Simple_repeat 1 61 0 13508 151 48 12 chr6 92973365 92975699 -96303855 + Tigger1 DNA MER2_type 2 2418 0 2194 91 0 3 chr6 92975794 92976090 -96303464 - AluY SINE Alu -16 295 1 36 53 0 0 chr6 92976505 92976562 -96302992 + AT_rich Low_complexity Low_complexity 1 57 0 362 21 21 0 chr6 92977123 92977170 -96302384 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 7066 32 30 2 chr6 92977254 92978870 -96300684 + L1PA2 LINE L1 4514 6155 0 2710 48 70 0 chr6 92978895 92979250 -96300304 + L1PA5 LINE L1 5770 6149 -5 2104 93 0 0 chr6 92980640 92980938 -96298616 - AluY SINE Alu 0 308 11 964 201 4 21 chr6 92981064 92981300 -96298254 + L1MA4 LINE L1 5931 6158 -142 210 347 49 42 chr6 92982561 92982705 -96296849 + MER5A DNA MER1_type 38 182 -7 362 291 42 42 chr6 92984169 92984358 -96295196 + L1M4 LINE L1 2916 3104 -3042 343 279 9 18 chr6 92984402 92984513 -96295041 - MIR SINE MIR -42 220 111 3026 20 0 0 chr6 92984712 92985062 -96294492 + L1PA4 LINE L1 5805 6154 -1 34 72 0 0 chr6 92985264 92985333 -96294221 + AT_rich Low_complexity Low_complexity 1 69 0 1291 104 0 0 chr6 92985334 92985517 -96294037 - L1PA14 LINE L1 -17 6144 5962 303 203 0 0 chr6 92986106 92986175 -96293379 + GA-rich Low_complexity Low_complexity 4 72 0 297 314 50 59 chr6 92986299 92986452 -96293102 + HAL1 LINE L1 748 900 -1607 7684 22 1 0 chr6 92986452 92987920 -96291634 + L1PA4 LINE L1 4687 6155 0 297 314 50 59 chr6 92987920 92988005 -96291549 + HAL1 LINE L1 900 984 -1523 508 266 137 38 chr6 92988049 92988224 -96291330 + L1MC4 LINE L1 7710 7866 -176 1435 226 40 0 chr6 92988224 92988551 -96291003 - MER2 DNA MER2_type -4 340 1 333 47 0 0 chr6 92988552 92988595 -96290959 + (CA)n Simple_repeat Simple_repeat 2 44 0 508 266 137 38 chr6 92988595 92988710 -96290844 + L1MC4 LINE L1 7865 8031 -11 990 290 139 24 chr6 92988737 92989499 -96290055 + HAL1 LINE L1 1658 2507 0 333 299 111 7 chr6 92989984 92990128 -96289426 + L1M4 LINE L1 3589 3747 -2399 922 218 99 37 chr6 92990182 92990544 -96289010 - MSTC LTR MaLR 0 428 3 364 322 104 36 chr6 92990810 92991191 -96288363 - L2 LINE L2 -48 3265 2779 198 91 0 0 chr6 92992005 92992038 -96287516 + (TG)n Simple_repeat Simple_repeat 2 34 0 343 332 42 23 chr6 92992320 92992534 -96287020 - LTR16A LTR ERVL -88 362 145 1908 146 63 0 chr6 92992862 92993211 -96286343 - Tigger1 DNA MER2_type -3 2415 2045 198 0 0 0 chr6 92993764 92993786 -96285768 + (A)n Simple_repeat Simple_repeat 1 22 0 282 358 33 0 chr6 92993786 92993906 -96285648 - LTR16A LTR ERVL -323 127 4 388 335 81 25 chr6 92993921 92994350 -96285204 + L1M4 LINE L1 4942 5403 -743 21 57 0 0 chr6 92994456 92994491 -96285063 + AT_rich Low_complexity Low_complexity 1 35 0 40 37 0 0 chr6 92994574 92994628 -96284926 + AT_rich Low_complexity Low_complexity 1 54 0 203 332 91 64 chr6 92995116 92995336 -96284218 + L2 LINE L2 2834 3059 -213 219 277 0 0 chr6 92995940 92995987 -96283567 + L2 LINE L2 3224 3270 -2 23 33 0 0 chr6 92996402 92996432 -96283122 + AT_rich Low_complexity Low_complexity 1 30 0 206 192 90 103 chr6 92996625 92996703 -96282851 + MIR SINE MIR 156 232 -30 355 82 0 0 chr6 92998108 92998157 -96281397 - MADE1 DNA Mariner 0 80 32 306 302 38 9 chr6 92998458 92998564 -96280990 + L1ME2 LINE L1 56 164 -5906 232 255 21 32 chr6 92998676 92998770 -96280784 + L1ME2 LINE L1 5011 5103 -977 * 1581 223 112 19 chr6 92998752 92999184 -96280370 + L1ME2 LINE L1 5313 5703 -395 1859 156 58 17 chr6 92999184 92999544 -96280010 + THE1C LTR MaLR 1 375 0 9190 134 44 38 chr6 92999544 93001114 -96278440 + THE1C-int LTR MaLR 1 1580 0 2099 127 47 25 chr6 93001116 93001479 -96278075 + THE1C LTR MaLR 5 375 0 1581 223 112 19 chr6 93001479 93001580 -96277974 + L1ME2 LINE L1 5703 5900 -198 363 165 52 10 chr6 93001722 93001819 -96277735 + L1MA10 LINE L1 6215 6315 -19 457 70 0 0 chr6 93001824 93001881 -96277673 - Alu SINE Alu -16 296 240 1128 215 123 38 chr6 93002265 93002607 -96276947 + MLT2B1 LTR ERVL 16 419 -45 303 28 0 0 chr6 93002607 93002643 -96276911 + (TG)n Simple_repeat Simple_repeat 2 37 0 1128 215 123 38 chr6 93002643 93002693 -96276861 + MLT2B1 LTR ERVL 419 463 -1 225 0 0 0 chr6 93003258 93003283 -96276271 + (A)n Simple_repeat Simple_repeat 1 25 0 262 304 0 0 chr6 93004168 93004224 -96275330 - MIR3 SINE MIR -18 190 135 10018 192 43 32 chr6 93004516 93004714 -96274840 - L1MA4A LINE L1 -5 7000 6806 459 0 0 0 chr6 93004714 93004765 -96274789 + (TTA)n Simple_repeat Simple_repeat 2 52 0 2037 56 8 4 chr6 93004765 93005017 -96274537 - AluY SINE Alu -28 283 31 10018 192 43 32 chr6 93005017 93005214 -96274340 - L1MA4A LINE L1 -199 6806 6613 676 227 0 0 chr6 93005214 93005333 -96274221 - FLAM_A SINE Alu -14 119 1 10018 192 43 32 chr6 93005333 93008442 -96271112 - L1MA4A LINE L1 -392 6613 3462 14202 40 1 1 chr6 93008442 93010951 -96268603 - L1PA3 LINE L1 -3 6152 3648 29517 44 1 3 chr6 93010955 93014595 -96264959 + L1PA3 LINE L1 11 3642 -2504 607 186 51 26 chr6 93014592 93014748 -96264806 - L1MA4A LINE L1 -3354 3494 3335 * 381 22 0 0 chr6 93014765 93014811 -96264743 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4624 186 13 26 chr6 93014812 93016388 -96263166 - L1PB4 LINE L1 -12 6144 4581 * 13533 199 43 14 chr6 93016379 93018338 -96261216 - L1MA4A LINE L1 -3525 3323 1423 7092 57 26 0 chr6 93018338 93019212 -96260342 + MER11D LTR ERVK 1 897 0 13533 199 43 14 chr6 93019212 93019376 -96260178 - L1MA4A LINE L1 -5425 1423 1265 5046 91 0 0 chr6 93019376 93020036 -96259518 + PABL_A LTR ERV1 1 660 0 13533 199 43 14 chr6 93020036 93020989 -96258565 - L1MA4A LINE L1 -5583 1265 154 398 348 92 35 chr6 93021697 93022045 -96257509 + L2 LINE L2 2945 3312 -1 28 61 0 0 chr6 93022149 93022198 -96257356 + AT_rich Low_complexity Low_complexity 1 49 0 208 70 47 58 chr6 93022223 93022309 -96257245 + (TAAA)n Simple_repeat Simple_repeat 4 88 0 483 268 125 43 chr6 93025681 93025934 -96253620 + Tigger8 DNA MER2_type 40 320 -346 2308 85 0 3 chr6 93025934 93026250 -96253304 + AluY SINE Alu 1 311 0 483 268 125 43 chr6 93026250 93026276 -96253278 + Tigger8 DNA MER2_type 320 342 -324 44 80 0 0 chr6 93026432 93026532 -96253022 + AT_rich Low_complexity Low_complexity 1 100 0 207 433 31 0 chr6 93026698 93026825 -96252729 - L2 LINE L2 -252 3020 2890 229 329 0 13 chr6 93028157 93028233 -96251321 + MER5B DNA MER1_type 3 77 -101 30 45 0 0 chr6 93028475 93028519 -96251035 + AT_rich Low_complexity Low_complexity 1 44 0 223 404 15 7 chr6 93028523 93028659 -96250895 + MER5A DNA MER1_type 53 189 0 441 350 100 14 chr6 93028773 93029193 -96250361 + L2 LINE L2 2858 3313 0 193 317 71 67 chr6 93029320 93029560 -96249994 - L2 LINE L2 -223 3049 2809 367 409 40 21 chr6 93030189 93030828 -96248726 + L2 LINE L2 2622 3271 -1 274 312 0 11 chr6 93030828 93030921 -96248633 + GA-rich Low_complexity Low_complexity 1 92 0 206 286 179 62 chr6 93031085 93031375 -96248179 - L2 LINE L2 -2 3270 2947 1337 113 29 71 chr6 93031812 93032052 -96247502 - MER30 DNA MER1_type 0 230 1 508 337 0 22 chr6 93032927 93033111 -96246443 - MIR SINE MIR -49 213 34 21 71 0 0 chr6 93033818 93033860 -96245694 + AT_rich Low_complexity Low_complexity 1 42 0 2079 182 3 3 chr6 93035380 93035742 -96243812 + MLT1A1 LTR MaLR 3 364 -1 213 175 0 0 chr6 93036141 93036181 -96243373 + (TA)n Simple_repeat Simple_repeat 1 40 0 2513 57 0 0 chr6 93036251 93036548 -96243006 + AluY SINE Alu 1 297 -14 465 225 92 69 chr6 93037828 93038001 -96241553 - MER5B DNA MER1_type 0 178 2 294 279 216 0 chr6 93038139 93038250 -96241304 - MER5A DNA MER1_type -3 186 52 5396 165 15 17 chr6 93038255 93039894 -96239660 - L1PB1 LINE L1 -3 6148 4513 * 6034 200 14 7 chr6 93039892 93041394 -96238160 + L1PB1 LINE L1 2970 4484 -1662 241 315 0 0 chr6 93041541 93041614 -96237940 + L1ME LINE L1 5688 5760 -361 30 59 0 0 chr6 93041825 93041876 -96237678 + AT_rich Low_complexity Low_complexity 1 51 0 304 136 15 15 chr6 93042158 93042224 -96237330 + (TA)n Simple_repeat Simple_repeat 1 66 0 373 328 29 35 chr6 93042915 93043086 -96236468 - MER5B DNA MER1_type -8 170 1 493 136 242 8 chr6 93043714 93043846 -96235708 + MER53 DNA DNA 10 172 -17 180 0 0 0 chr6 93043846 93043866 -96235688 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr6 93044014 93044035 -96235519 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 93044357 93044379 -96235175 + AT_rich Low_complexity Low_complexity 1 22 0 272 252 26 97 chr6 93044766 93044921 -96234633 + L1ME LINE L1 5680 5823 -347 * 603 231 37 0 chr6 93044913 93045047 -96234507 + L1MC1 LINE L1 6189 6327 -6 19791 35 6 1 chr6 93045491 93048023 -96231531 - L1P2 LINE L1 -665 5490 2947 22 0 0 0 chr6 93048165 93048187 -96231367 + AT_rich Low_complexity Low_complexity 1 22 0 230 151 57 0 chr6 93048241 93048294 -96231260 + HSMAR2 DNA Mariner 217 272 -1030 232 56 83 0 chr6 93048295 93048331 -96231223 + L1P LINE L1 5159 5197 -949 4520 194 34 14 chr6 93048691 93050094 -96229460 - L1MA10 LINE L1 -105 6229 4794 6864 142 71 2 chr6 93050094 93051312 -96228242 - HSMAR2 DNA Mariner -1 1301 1 4520 194 34 14 chr6 93051312 93051334 -96228220 - L1MA10 LINE L1 -1540 4794 4774 280 259 50 98 chr6 93051730 93052170 -96227384 + L1MC1 LINE L1 4404 4822 -1324 265 163 11 43 chr6 93052171 93052263 -96227291 + (CATATA)n Simple_repeat Simple_repeat 6 94 0 305 294 96 14 chr6 93052277 93052423 -96227131 + L1MC1 LINE L1 4916 5073 -1073 705 339 129 4 chr6 93052579 93053098 -96226456 + L1MC1 LINE L1 5254 5837 -1971 26 0 0 0 chr6 93053399 93053425 -96226129 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr6 93053444 93053471 -96226083 + AT_rich Low_complexity Low_complexity 1 27 0 1153 49 7 0 chr6 93053471 93053615 -96225939 - L1PA3 LINE L1 -3 6152 6008 1948 128 0 7 chr6 93053816 93054106 -96225448 + AluSx SINE Alu 1 288 -24 23 0 0 0 chr6 93054947 93054970 -96224584 + AT_rich Low_complexity Low_complexity 1 23 0 228 35 0 0 chr6 93055814 93055843 -96223711 + (CA)n Simple_repeat Simple_repeat 2 30 0 307 311 0 0 chr6 93057788 93057862 -96221692 - L2 LINE L2 -1 3312 3239 246 32 0 0 chr6 93057868 93057899 -96221655 + (CA)n Simple_repeat Simple_repeat 2 32 0 383 290 95 46 chr6 93058053 93058336 -96221218 - L2 LINE L2 -6 3307 3011 534 201 78 26 chr6 93058338 93058492 -96221062 + L1MC1 LINE L1 6171 6332 -1 6027 37 0 1 chr6 93059950 93060680 -96218874 - L1PA4 LINE L1 -3 6152 5424 1948 28 4 0 chr6 93060680 93060958 -96218596 + L1PA4 LINE L1 5152 5430 -725 29 0 0 0 chr6 93061014 93061043 -96218511 + AT_rich Low_complexity Low_complexity 1 29 0 42 20 0 0 chr6 93061458 93061507 -96218047 + AT_rich Low_complexity Low_complexity 1 49 0 2946 256 24 52 chr6 93061877 93062727 -96216827 + MER21B LTR ERV1 13 838 -25 266 350 126 20 chr6 93063018 93063312 -96216242 + L2 LINE L2 1678 2002 -1312 5677 147 35 11 chr6 93063371 93064641 -96214913 + L1MA8 LINE L1 4988 6288 -3 1996 99 11 11 chr6 93064647 93064967 -96214587 + AluSx SINE Alu 1 320 0 817 319 83 74 chr6 93064980 93066103 -96213451 + L2 LINE L2 2131 3268 -4 277 238 133 70 chr6 93067324 93067467 -96212087 + MIR SINE MIR 105 256 -6 285 98 0 0 chr6 93069075 93069116 -96210438 + (TTG)n Simple_repeat Simple_repeat 2 42 0 279 0 0 0 chr6 93070885 93070916 -96208638 + (CA)n Simple_repeat Simple_repeat 2 32 0 1415 149 53 22 chr6 93071168 93071602 -96207952 + LTR54 LTR ERV1 1 510 0 237 333 0 0 chr6 93073152 93073218 -96206336 + L2 LINE L2 2988 3053 -219 490 289 69 102 chr6 93073482 93074033 -96205521 - HAL1 LINE L1 -1163 1344 812 2452 168 32 11 chr6 93074139 93074614 -96204940 - MER31A LTR ERV1 0 485 1 6086 119 6 31 chr6 93074797 93075751 -96203803 - THE1B-int LTR MaLR -650 930 1 2097 147 30 30 chr6 93075754 93076115 -96203439 - THE1B LTR MaLR -3 361 1 1660 131 111 40 chr6 93077142 93077492 -96202062 + THE1C LTR MaLR 1 375 0 222 37 0 0 chr6 93078816 93078843 -96200711 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 380 284 64 9 chr6 93078852 93078961 -96200593 + L2 LINE L2 3143 3257 -15 21 57 0 0 chr6 93079667 93079702 -96199852 + AT_rich Low_complexity Low_complexity 1 35 0 3405 147 47 9 chr6 93079951 93080449 -96199105 + L1MA4 LINE L1 5307 5836 -464 2061 140 0 3 chr6 93080449 93080756 -96198798 + AluSx SINE Alu 1 306 -6 3405 147 47 9 chr6 93080756 93080890 -96198664 + L1MA4 LINE L1 5836 5963 -337 7461 32 5 0 chr6 93080990 93082268 -96197286 + L1PA3 LINE L1 4873 6154 -1 4054 120 31 13 chr6 93082268 93082953 -96196601 + L1MA2 LINE L1 5334 6030 -274 1377 146 0 42 chr6 93083094 93083355 -96196199 - AluSx SINE Alu 0 306 56 16972 108 25 11 chr6 93083355 93084324 -96195230 + L1P LINE L1 2707 3661 -2485 234 0 0 0 chr6 93084324 93084350 -96195204 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 16972 108 25 11 chr6 93084350 93086038 -96193516 + L1P LINE L1 3661 5400 -746 372 371 7 0 chr6 93086186 93086329 -96193225 + MIR SINE MIR 8 151 -111 9947 197 45 29 chr6 93086890 93086970 -96192584 - L1MA4A LINE L1 -105 6198 6121 1999 56 8 4 chr6 93086970 93087264 -96192290 - AluY SINE Alu 0 325 31 9947 197 45 29 chr6 93087264 93087461 -96192093 - L1MA4A LINE L1 -182 6121 5929 643 235 0 0 chr6 93087461 93087580 -96191974 - FLAM_A SINE Alu -14 119 1 9947 197 45 29 chr6 93087580 93090689 -96188865 - L1MA4A LINE L1 -374 5929 2760 9695 34 0 0 chr6 93090689 93092643 -96186911 - L1PA4 LINE L1 -3 6152 4199 21930 29 5 0 chr6 93092644 93096090 -96183464 + L1PA3 LINE L1 2712 6155 0 207 243 27 40 chr6 93096095 93096169 -96183385 - L2 LINE L2 -1558 1756 1684 27 0 0 0 chr6 93096634 93096661 -96182893 + AT_rich Low_complexity Low_complexity 1 27 0 246 159 0 72 chr6 93096661 93096730 -96182824 + (TACTG)n Simple_repeat Simple_repeat 1 64 0 249 155 0 42 chr6 93096730 93096801 -96182753 + (TA)n Simple_repeat Simple_repeat 1 68 0 220 349 72 43 chr6 93096891 93097100 -96182454 - L2 LINE L2 -2377 937 723 421 329 20 13 chr6 93097117 93097269 -96182285 - LTR16A LTR ERVL -190 260 108 369 372 7 2 chr6 93097480 93097674 -96181880 - MERVL LTR ERVL -147 5338 5145 643 350 66 31 chr6 93097812 93098506 -96181048 - MERVL LTR ERVL -703 4951 4216 1161 241 32 46 chr6 93098506 93098876 -96180678 + MLT1A1 LTR MaLR 1 365 0 643 350 66 31 chr6 93098876 93099027 -96180527 - MERVL LTR ERVL -1438 4216 4072 1669 211 31 6 chr6 93099123 93099479 -96180075 - MLT1A1 LTR MaLR 0 365 1 2389 228 21 17 chr6 93099480 93100002 -96179552 - MER74A LTR ERVL 0 558 35 403 302 13 6 chr6 93100083 93100242 -96179312 - MERVL LTR ERVL -1784 3980 3821 1095 286 107 66 chr6 93100290 93101110 -96178444 - MERVL LTR ERVL -2444 2552 1910 1201 344 58 26 chr6 93101139 93101992 -96177562 - MERVL LTR ERVL -3143 1853 912 1152 332 42 16 chr6 93102032 93102535 -96177019 - MERVL LTR ERVL -4171 825 310 408 287 72 14 chr6 93102691 93102914 -96176640 - L1ME LINE L1 -381 5740 5505 21 36 0 0 chr6 93102969 93102997 -96176557 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr6 93103248 93103274 -96176280 + (CA)n Simple_repeat Simple_repeat 1 26 0 359 257 86 53 chr6 93104224 93104376 -96175178 - MIR SINE MIR -4 258 102 38 22 0 0 chr6 93104547 93104592 -96174962 + AT_rich Low_complexity Low_complexity 1 45 0 245 100 0 80 chr6 93106156 93106206 -96173348 - MADE1 DNA Mariner -1 79 34 372 55 0 18 chr6 93106215 93106270 -96173284 + MADE1 DNA Mariner 27 80 0 194 268 51 134 chr6 93106276 93106433 -96173121 + MIR SINE MIR 11 154 -108 279 0 0 0 chr6 93107335 93107366 -96172188 + (TG)n Simple_repeat Simple_repeat 2 32 0 198 309 73 45 chr6 93107366 93107476 -96172078 - MIR SINE MIR -75 187 75 282 29 0 0 chr6 93107706 93107741 -96171813 + (CA)n Simple_repeat Simple_repeat 2 36 0 182 116 23 0 chr6 93107742 93107785 -96171769 + (TA)n Simple_repeat Simple_repeat 2 45 0 238 371 19 9 chr6 93107819 93107924 -96171630 + MIR SINE MIR 6 111 -151 2031 132 24 34 chr6 93107924 93108303 -96171251 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr6 93110015 93110039 -96169515 + AT_rich Low_complexity Low_complexity 1 24 0 42 20 0 0 chr6 93110228 93110277 -96169277 + AT_rich Low_complexity Low_complexity 1 49 0 3705 154 10 33 chr6 93111300 93112025 -96167529 + L1MA7 LINE L1 5577 6284 -7 226 370 127 23 chr6 93112087 93112520 -96167034 - L2 LINE L2 -1771 1543 1066 225 0 0 0 chr6 93112575 93112600 -96166954 + (TTG)n Simple_repeat Simple_repeat 2 26 0 319 385 22 11 chr6 93112648 93112827 -96166727 - MIR SINE MIR -34 228 48 212 176 20 0 chr6 93114321 93114338 -96165216 + (TTTA)n Simple_repeat Simple_repeat 2 17 -36 1925 167 55 0 chr6 93114338 93114668 -96164886 - MER7A DNA MER2_type 0 346 1 212 176 20 0 chr6 93114668 93114701 -96164853 + (TTTA)n Simple_repeat Simple_repeat 17 53 0 379 332 63 54 chr6 93115931 93116392 -96163162 - L2 LINE L2 -644 2670 2206 214 186 0 0 chr6 93117125 93117168 -96162386 + A-rich Low_complexity Low_complexity 1 43 0 2171 109 3 0 chr6 93117179 93117519 -96162035 + AluSg SINE Alu 1 310 0 650 271 125 9 chr6 93117828 93118133 -96161421 + MLT1F LTR MaLR 160 590 0 5262 225 25 20 chr6 93119966 93120917 -96158637 - L1 LINE L1 -1681 4465 3503 742 179 0 15 chr6 93120917 93121051 -96158503 - FLAM_C SINE Alu -1 132 1 5262 225 25 20 chr6 93121051 93121534 -96158020 - L1 LINE L1 -2643 3503 3024 * 5305 177 18 18 chr6 93121533 93122025 -96157529 + L1PA16 LINE L1 4470 4960 -1206 2210 106 67 17 chr6 93122025 93122382 -96157172 + THE1C LTR MaLR 1 375 0 9856 130 33 7 chr6 93122382 93123921 -96155633 + THE1C-int LTR MaLR 1 1580 0 2309 133 11 21 chr6 93123923 93124300 -96155254 + THE1C LTR MaLR 3 375 0 5305 177 18 18 chr6 93124300 93124695 -96154859 + L1PA16 LINE L1 4960 5353 -813 2028 112 0 67 chr6 93124695 93125025 -96154529 + AluSp SINE Alu 1 308 -5 5305 177 18 18 chr6 93125025 93125817 -96153737 + L1PA16 LINE L1 5353 6164 -2 203 262 16 0 chr6 93126609 93126670 -96152884 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 342 245 43 14 chr6 93126706 93126845 -96152709 + L1M4 LINE L1 2144 2286 -3860 28 71 0 0 chr6 93127087 93127143 -96152411 + AT_rich Low_complexity Low_complexity 1 56 0 497 313 83 26 chr6 93128135 93128678 -96150876 + L1MCa LINE L1 896 1469 -4957 1527 147 60 0 chr6 93128682 93128947 -96150607 - AluJb SINE Alu -17 295 15 331 339 42 53 chr6 93128963 93129152 -96150402 + L1MCa LINE L1 1650 1836 -4771 730 260 99 37 chr6 93129167 93130155 -96149399 + L1MCa LINE L1 1972 3107 -3319 662 173 0 0 chr6 93130165 93130292 -96149262 + FLAM_A SINE Alu 11 137 0 444 209 130 72 chr6 93130303 93130580 -96148974 + L1MCa LINE L1 3118 3410 -3016 1340 260 82 42 chr6 93130779 93131476 -96148078 + L1MCa LINE L1 3434 4158 -2268 662 150 24 0 chr6 93131677 93131804 -96147750 - L1PA12 LINE L1 -3628 3956 3827 3817 195 8 16 chr6 93132359 93132916 -96146638 - L1PA12 LINE L1 -3753 3831 3280 2279 99 3 6 chr6 93132916 93133228 -96146326 + AluSp SINE Alu 1 311 -2 3817 195 8 16 chr6 93133228 93133446 -96146108 - L1PA12 LINE L1 -4304 3280 3062 400 181 0 0 chr6 93133444 93133516 -96146038 - L1PA12 LINE L1 -7509 72 1 * 926 282 164 4 chr6 93133520 93133723 -96145831 + L1MCa LINE L1 4173 4342 -2084 2085 124 0 7 chr6 93133723 93134021 -96145533 + AluSc SINE Alu 1 296 -13 926 282 164 4 chr6 93134021 93134352 -96145202 + L1MCa LINE L1 4342 4793 -1633 725 215 61 14 chr6 93134341 93134555 -96144999 + L1MCa LINE L1 5061 5284 -1142 * 941 196 114 32 chr6 93134599 93134675 -96144879 + L1MEc LINE L1 14 82 -6314 186 43 0 0 chr6 93134675 93134698 -96144856 + (CAA)n Simple_repeat Simple_repeat 1 23 0 941 196 114 32 chr6 93134698 93134901 -96144653 + L1MEc LINE L1 82 316 -6080 234 128 0 0 chr6 93137410 93137449 -96142105 + (TA)n Simple_repeat Simple_repeat 2 40 0 210 268 0 14 chr6 93137460 93137531 -96142023 + (TA)n Simple_repeat Simple_repeat 1 70 0 285 324 81 11 chr6 93138775 93138927 -96140627 - MIR SINE MIR -64 144 19 246 128 0 0 chr6 93139351 93139390 -96140164 + (TG)n Simple_repeat Simple_repeat 2 40 0 26 0 0 0 chr6 93139444 93139470 -96140084 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chr6 93139819 93139841 -96139713 + (A)n Simple_repeat Simple_repeat 1 22 0 582 136 0 19 chr6 93140029 93140132 -96139422 - AluSg/x SINE Alu -16 293 193 496 219 32 24 chr6 93140921 93141044 -96138510 - L1MD3 LINE L1 -11 7984 7861 237 314 73 8 chr6 93142119 93142243 -96137311 + L2 LINE L2 3158 3289 -24 250 350 51 32 chr6 93143067 93143224 -96136330 - L2 LINE L2 -571 2743 2584 210 91 0 0 chr6 93143296 93143329 -96136225 + (A)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr6 93143716 93143739 -96135815 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 253 213 0 0 chr6 93144617 93144664 -96134890 + L2 LINE L2 3226 3272 0 322 349 71 44 chr6 93144771 93144918 -96134636 + MIR SINE MIR 3 162 -100 7395 34 1 0 chr6 93144918 93145833 -96133721 + L1PA4 LINE L1 5255 6170 0 322 349 71 44 chr6 93145833 93145936 -96133618 + MIR SINE MIR 162 261 -1 24 0 0 0 chr6 93148779 93148803 -96130751 + AT_rich Low_complexity Low_complexity 1 24 0 2093 142 0 0 chr6 93148891 93149186 -96130368 - AluSg SINE Alu -15 295 1 22 0 0 0 chr6 93149456 93149478 -96130076 + AT_rich Low_complexity Low_complexity 1 22 0 1718 195 109 33 chr6 93149488 93149975 -96129579 - L1MD2 LINE L1 -8 6351 5828 469 216 96 54 chr6 93150085 93150252 -96129302 - MER5A DNA MER1_type -15 174 1 311 237 47 16 chr6 93150410 93150591 -96128963 + L1ME LINE L1 5304 5430 -734 345 318 37 0 chr6 93150972 93151079 -96128475 - MIR SINE MIR 0 262 152 207 246 16 33 chr6 93151080 93151141 -96128413 - MIR SINE MIR 0 262 203 258 268 0 0 chr6 93151146 93151202 -96128352 - MIR SINE MIR 0 262 207 348 277 40 62 chr6 93151792 93151969 -96127585 - MIR SINE MIR -70 192 20 1846 191 43 41 chr6 93153081 93153542 -96126012 + MLT1C LTR MaLR 6 467 0 561 232 122 37 chr6 93153830 93153994 -96125560 - MER45A DNA AcHobo 0 178 1 391 354 49 14 chr6 93155300 93155444 -96124110 - HAL1b LINE L1 -652 696 548 23 68 0 0 chr6 93155543 93155587 -96123967 + AT_rich Low_complexity Low_complexity 1 44 0 591 263 33 11 chr6 93157992 93158262 -96121292 + L1M4 LINE L1 2201 2476 -3670 320 258 17 0 chr6 93158279 93158399 -96121155 + L1M4 LINE L1 5134 5255 -891 18342 68 2 0 chr6 93158820 93161300 -96118254 + L1P LINE L1 11 2495 -3651 809 227 19 0 chr6 93162453 93162607 -96116947 - MER5A DNA MER1_type 0 189 33 254 406 0 10 chr6 93163644 93163740 -96115814 + MIR3 SINE MIR 12 106 -102 436 314 25 0 chr6 93163780 93163901 -96115653 - L2 LINE L2 0 3313 3190 2310 97 3 3 chr6 93164500 93164799 -96114755 - AluSc SINE Alu -10 299 1 817 235 40 5 chr6 93165349 93165549 -96114005 + MER20 DNA MER1_type 9 215 -4 1471 221 200 6 chr6 93165551 93166296 -96113258 + L1MEc LINE L1 1762 2611 -3604 292 241 52 17 chr6 93166328 93166444 -96113110 + L1MEc LINE L1 2693 2812 -3403 30165 56 5 1 chr6 93166996 93171870 -96107684 - L1PA4 LINE L1 0 6155 1270 192 77 0 0 chr6 93172031 93172057 -96107497 + (T)n Simple_repeat Simple_repeat 1 26 0 26 64 0 0 chr6 93172371 93172418 -96107136 + AT_rich Low_complexity Low_complexity 1 47 0 342 292 83 8 chr6 93176500 93176620 -96102934 - MER5B DNA MER1_type -3 175 47 1596 188 33 11 chr6 93176670 93177031 -96102523 + MLT1B LTR MaLR 22 390 0 533 275 99 0 chr6 93177079 93177250 -96102304 - MER5A DNA MER1_type -1 188 1 189 0 0 0 chr6 93177693 93177714 -96101840 + (TAA)n Simple_repeat Simple_repeat 2 22 0 207 346 122 0 chr6 93178116 93178223 -96101331 + L2 LINE L2 2905 3024 -248 292 226 0 16 chr6 93179746 93179808 -96099746 - MIR SINE MIR -102 160 100 1189 217 4 4 chr6 93180009 93180262 -96099292 + Charlie1a DNA MER1_type 1 253 -1202 2131 189 102 19 chr6 93180265 93180930 -96098624 + Charlie1a DNA MER1_type 658 1455 0 243 292 0 42 chr6 93181905 93181977 -96097577 + L3 LINE CR1 1506 1574 -3 272 263 25 51 chr6 93182468 93182586 -96096968 + MER117 DNA MER1_type 22 136 -61 299 250 91 0 chr6 93182589 93182677 -96096877 - MIR SINE MIR -73 189 94 2175 120 0 3 chr6 93183023 93183323 -96096231 + AluSg1 SINE Alu 1 299 -10 199 154 31 15 chr6 93184739 93184804 -96094750 + T-rich Low_complexity Low_complexity 5 70 0 275 276 164 0 chr6 93185763 93185879 -96093675 - L2 LINE L2 0 3313 3179 300 363 66 38 chr6 93185980 93186192 -96093362 - L2 LINE L2 -186 3086 2869 263 290 84 37 chr6 93187835 93187942 -96091612 - MIR SINE MIR -75 133 22 277 353 60 0 chr6 93188465 93188581 -96090973 + MIR SINE MIR 20 142 -66 279 238 113 0 chr6 93189149 93189229 -96090325 - L2 LINE L2 -2 3311 3223 1739 234 51 60 chr6 93189974 93190526 -96089028 + MLT2B3 LTR ERVL 1 547 -7 7125 120 0 0 chr6 93190529 93191592 -96087962 + HERVL-B3-B3 LTR ERVL 1 1063 -4591 1112 148 48 39 chr6 93191592 93191822 -96087732 + THE1B LTR MaLR 133 364 0 16659 89 22 22 chr6 93191822 93194716 -96084838 + HERVL-B3-B3 LTR ERVL 2006 4899 -755 3701 43 0 0 chr6 93194716 93195162 -96084392 + L1PA4 LINE L1 5702 6147 -8 16659 89 22 22 chr6 93195162 93195918 -96083636 + HERVL-B3-B3 LTR ERVL 4899 5654 0 1862 234 46 67 chr6 93195918 93196483 -96083071 + MLT2B3 LTR ERVL 1 553 -1 437 319 86 12 chr6 93196757 93196920 -96082634 + L2 LINE L2 3139 3313 0 2146 103 7 13 chr6 93197781 93198082 -96081472 + AluY SINE Alu 1 299 -12 391 316 86 24 chr6 93198998 93199207 -96080347 - MIR SINE MIR -12 250 29 445 267 158 30 chr6 93200736 93200901 -96078653 - MER5A DNA MER1_type 0 189 4 1603 190 17 0 chr6 93201280 93201569 -96077985 + AluJo SINE Alu 11 304 -8 236 349 0 0 chr6 93201854 93201920 -96077634 - MIR SINE MIR -112 150 85 795 244 49 0 chr6 93202086 93202291 -96077263 - AluJo SINE Alu -97 215 1 313 300 31 0 chr6 93202689 93202819 -96076735 + MER94 DNA DNA 1 134 0 24 0 0 0 chr6 93203062 93203086 -96076468 + AT_rich Low_complexity Low_complexity 1 24 0 814 306 126 19 chr6 93203975 93204529 -96075025 + L2 LINE L2 2701 3309 -4 287 331 58 8 chr6 93204626 93204747 -96074807 - MIR SINE MIR -62 146 20 825 279 18 4 chr6 93204927 93205156 -96074398 - MIR SINE MIR -19 243 12 550 366 99 25 chr6 93207037 93207359 -96072195 - L2 LINE L2 -4 3268 2923 5400 127 36 22 chr6 93207359 93208950 -96070604 + L1PA15 LINE L1 4568 6165 0 1470 137 0 5 chr6 93209275 93209486 -96070068 + AluSc SINE Alu 5 214 -95 265 125 0 0 chr6 93209486 93209534 -96070020 + AluSc SINE Alu 255 302 0 406 279 113 35 chr6 93209906 93210135 -96069419 - L2 LINE L2 -1269 2045 1799 768 254 86 91 chr6 93210139 93210525 -96069029 - MLT1I LTR MaLR 0 409 26 186 143 0 0 chr6 93212582 93212610 -96066944 + MIR SINE MIR 222 249 -13 266 284 78 10 chr6 93214794 93214896 -96064658 - MIR SINE MIR -67 195 87 2281 115 3 0 chr6 93215371 93215675 -96063879 - AluSq SINE Alu -8 305 1 337 266 122 14 chr6 93216151 93216290 -96063264 - MIR SINE MIR -53 209 56 204 222 0 0 chr6 93216803 93216848 -96062706 + MIR SINE MIR 170 214 -48 550 262 186 53 chr6 93217170 93217644 -96061910 - L1ME4a LINE L1 0 6121 5585 241 289 73 29 chr6 93217798 93218002 -96061552 - L1ME4a LINE L1 -748 5398 5186 546 308 91 45 chr6 93218112 93218696 -96060858 + L1M4 LINE L1 2111 2721 -3425 1582 188 55 12 chr6 93218832 93219162 -96060392 + MER2 DNA MER2_type 1 344 0 21 0 0 0 chr6 93219182 93219203 -96060351 + AT_rich Low_complexity Low_complexity 1 21 0 232 318 47 28 chr6 93219343 93219450 -96060104 + L3 LINE CR1 912 1020 -557 514 290 175 19 chr6 93220099 93220465 -96059089 + L3 LINE CR1 1048 1470 -107 1279 27 0 0 chr6 93220506 93220656 -96058898 - L1PA5 LINE L1 -5 6149 6000 798 146 16 0 chr6 93220760 93220883 -96058671 + L1PA10 LINE L1 6040 6164 -4 1945 112 7 13 chr6 93221080 93221385 -96058169 - AluSp SINE Alu -10 303 1 3283 176 33 16 chr6 93221435 93221647 -96057907 - L1 LINE L1 -1674 4536 4329 189 0 0 0 chr6 93221647 93221668 -96057886 + (TG)n Simple_repeat Simple_repeat 2 22 0 3283 176 33 16 chr6 93221668 93222161 -96057393 - L1 LINE L1 -1881 4329 3819 3409 224 50 81 chr6 93222170 93222458 -96057096 - L1 LINE L1 -2766 3444 3149 2001 150 0 0 chr6 93222458 93222758 -96056796 + AluY SINE Alu 1 300 -11 3409 224 50 81 chr6 93222758 93223390 -96056164 - L1 LINE L1 -3061 3149 2499 1266 211 98 16 chr6 93223390 93223708 -96055846 + MER2 DNA MER2_type 1 344 0 3409 224 50 81 chr6 93223708 93224540 -96055014 - L1 LINE L1 -3711 2499 1700 3176 241 86 39 chr6 93224536 93224863 -96054691 - L1 LINE L1 -4342 1869 1559 * 2003 152 7 3 chr6 93224863 93225173 -96054381 - AluSq SINE Alu 0 313 3 3176 241 86 39 chr6 93225173 93226202 -96053352 - L1 LINE L1 -4652 1559 463 620 307 11 0 chr6 93226194 93226370 -96053184 - L1 LINE L1 -5963 178 1 * 21 0 0 0 chr6 93226386 93226407 -96053147 + AT_rich Low_complexity Low_complexity 1 21 0 2205 109 0 7 chr6 93226407 93226701 -96052853 - AluSq SINE Alu -21 292 1 1037 213 68 89 chr6 93227042 93227436 -96052118 + MLT1C LTR MaLR 3 465 -2 220 317 0 0 chr6 93228714 93228774 -96050780 - L2 LINE L2 -1 3312 3253 210 233 70 0 chr6 93228868 93228911 -96050643 - MIR3 SINE MIR -49 159 114 218 395 117 22 chr6 93228981 93229604 -96049950 - L2 LINE L2 -847 2467 1786 219 306 63 18 chr6 93229913 93230024 -96049530 + L2 LINE L2 3154 3269 -3 230 301 15 15 chr6 93231009 93231145 -96048409 + (TA)n Simple_repeat Simple_repeat 2 137 0 305 277 104 57 chr6 93231608 93231872 -96047682 - L1M4 LINE L1 -994 5152 4878 29 0 0 0 chr6 93232271 93232300 -96047254 + AT_rich Low_complexity Low_complexity 1 29 0 186 133 0 0 chr6 93232654 93232684 -96046870 + (TTTTTA)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr6 93233674 93233699 -96045855 + AT_rich Low_complexity Low_complexity 1 25 0 578 292 70 51 chr6 93233779 93234152 -96045402 - HAL1b LINE L1 -641 707 328 224 312 57 64 chr6 93234230 93234387 -96045167 + L2 LINE L2 2489 2644 -670 275 206 29 15 chr6 93234519 93234587 -96044967 - MER112 DNA MER1_type -11 249 181 375 270 20 20 chr6 93234609 93234757 -96044797 + MER112 DNA MER1_type 64 211 -49 225 245 0 0 chr6 93234777 93234826 -96044728 - MER112 DNA MER1_type -189 71 23 428 245 42 122 chr6 93234852 93235131 -96044423 + L2 LINE L2 2791 3058 -214 22 0 0 0 chr6 93236655 93236677 -96042877 + AT_rich Low_complexity Low_complexity 1 22 0 1851 149 102 15 chr6 93238214 93238549 -96041005 - THE1B LTR MaLR 0 364 1 3703 112 9 6 chr6 93238901 93239444 -96040110 + L1PA11 LINE L1 5630 6174 0 280 74 0 0 chr6 93240347 93240397 -96039157 + L1PA2 LINE L1 6105 6155 0 2427 226 52 25 chr6 93241202 93241465 -96038089 - L1ME2 LINE L1 -14 6150 5896 2035 159 23 21 chr6 93241465 93241854 -96037700 - MLT1B LTR MaLR 0 390 1 2427 226 52 25 chr6 93241854 93242323 -96037231 - L1ME2 LINE L1 -268 5896 5398 316 66 311 0 chr6 93242324 93242385 -96037169 + MADE1 DNA Mariner 1 80 0 21 36 0 0 chr6 93242897 93242925 -96036629 + AT_rich Low_complexity Low_complexity 1 28 0 601 193 116 14 chr6 93243059 93243266 -96036288 - HAL1 LINE L1 -169 2338 2111 513 270 37 29 chr6 93243462 93243630 -96035924 + MIR SINE MIR 10 180 -28 180 0 0 0 chr6 93243657 93243677 -96035877 + (GA)n Simple_repeat Simple_repeat 2 21 0 445 294 59 24 chr6 93243711 93243881 -96035673 - MLT1G1 LTR MaLR -404 191 16 467 318 128 45 chr6 93243913 93244621 -96034933 - L2 LINE L2 -437 2877 2111 2272 108 0 0 chr6 93245085 93245402 -96034152 + AluSp SINE Alu 1 317 0 29 28 0 0 chr6 93246045 93246081 -96033473 + AT_rich Low_complexity Low_complexity 1 36 0 316 308 37 43 chr6 93246104 93246403 -96033151 + HAL1b LINE L1 282 578 -770 261 270 98 11 chr6 93246856 93247030 -96032524 + L1MC4a LINE L1 5857 6045 -1763 203 311 94 62 chr6 93247405 93247649 -96031905 - L2 LINE L2 -1548 1766 1515 693 145 17 0 chr6 93247651 93247768 -96031786 - MSTB LTR MaLR 0 426 308 1436 153 148 58 chr6 93247768 93248133 -96031421 - MSTB LTR MaLR -28 398 1 404 331 62 31 chr6 93248134 93248424 -96031130 - L2 LINE L2 -1798 1516 1218 22879 131 36 21 chr6 93248450 93252630 -96026924 - L1PA8A LINE L1 0 6446 2064 2555 59 6 0 chr6 93252630 93252953 -96026601 + L1PA5 LINE L1 5829 6153 -1 22879 131 36 21 chr6 93252953 93255049 -96024505 - L1PA8A LINE L1 -4382 2064 1 790 311 128 52 chr6 93255087 93255978 -96023576 - L2 LINE L2 -2156 1158 200 327 222 16 8 chr6 93256614 93256624 -96022930 + (TA)n Simple_repeat Simple_repeat 2 10 -118 234 0 0 0 chr6 93256624 93256650 -96022904 + (CA)n Simple_repeat Simple_repeat 2 27 0 327 222 16 8 chr6 93256650 93256765 -96022789 + (TA)n Simple_repeat Simple_repeat 10 128 0 254 289 0 48 chr6 93257165 93257248 -96022306 - L2 LINE L2 -1 3312 3234 651 312 95 0 chr6 93257734 93257955 -96021599 + MIR SINE MIR 2 243 -19 311 314 144 0 chr6 93259257 93259375 -96020179 + L2 LINE L2 3136 3270 -2 319 327 55 0 chr6 93260097 93260207 -96019347 + L2 LINE L2 3157 3272 0 3471 148 18 55 chr6 93261912 93262635 -96016919 - L1MB3 LINE L1 -1 6182 5487 1821 186 26 23 chr6 93262661 93263043 -96016511 - L1MB3 LINE L1 -694 5489 5110 258 32 0 0 chr6 93263043 93263074 -96016480 + (TA)n Simple_repeat Simple_repeat 2 32 0 2051 121 7 0 chr6 93263075 93263357 -96016197 - AluSg SINE Alu -26 284 1 1821 186 26 23 chr6 93263357 93263586 -96015968 - L1MB3 LINE L1 -1072 5111 4902 393 252 59 7 chr6 93263639 93263774 -96015780 + MER63 DNA MER1_type 19 786 -50 701 303 114 41 chr6 93263859 93264053 -96015501 - L2 LINE L2 0 3313 3135 1908 99 55 4 chr6 93264053 93264325 -96015229 + AluSq SINE Alu 1 286 -27 701 303 114 41 chr6 93264325 93264932 -96014622 - L2 LINE L2 -178 3135 2462 39857 60 4 1 chr6 93265311 93271440 -96008114 + L1PA5 LINE L1 11 6154 0 2151 107 3 50 chr6 93272004 93272322 -96007232 - AluSp SINE Alu -10 303 1 465 110 0 0 chr6 93272565 93272647 -96006907 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 339 119 104 0 chr6 93274040 93274107 -96005447 + MLT1A1 LTR MaLR 1 74 -291 278 83 0 0 chr6 93274155 93274191 -96005363 + U2 snRNA snRNA 1 36 -152 * 1537 216 0 3 chr6 93274188 93274484 -96005070 + MLT1A1 LTR MaLR 71 365 0 368 268 125 0 chr6 93276111 93276223 -96003331 - L2 LINE L2 0 3313 3188 901 238 18 14 chr6 93276330 93276553 -96003001 - MIR SINE MIR -11 251 28 622 340 123 46 chr6 93277176 93277337 -96002217 + L2 LINE L2 2067 2214 -1058 2182 110 7 0 chr6 93277337 93277627 -96001927 - AluSc SINE Alu -17 292 1 622 340 123 46 chr6 93277627 93278015 -96001539 + L2 LINE L2 2214 2570 -702 2795 10 0 6 chr6 93278015 93278328 -96001226 - AluY SINE Alu 0 311 1 622 340 123 46 chr6 93278328 93278898 -96000656 + L2 LINE L2 2570 3270 -2 22 0 0 0 chr6 93279425 93279447 -96000107 + AT_rich Low_complexity Low_complexity 1 22 0 1532 219 7 11 chr6 93279447 93279734 -95999820 - AluJo SINE Alu -25 287 2 311 328 107 17 chr6 93279739 93279916 -95999638 - L1M4 LINE L1 -985 5161 4969 506 250 0 9 chr6 93280169 93280285 -95999269 + L2 LINE L2 3189 3303 -10 280 336 66 82 chr6 93280288 93280544 -95999010 + L2 LINE L2 2703 2954 -360 461 268 26 39 chr6 93280686 93280839 -95998715 + L2 LINE L2 3154 3304 -9 21 0 0 0 chr6 93280871 93280892 -95998662 + AT_rich Low_complexity Low_complexity 1 21 0 396 217 33 103 chr6 93281026 93281258 -95998296 - MER21B LTR ERV1 -249 356 141 29256 114 13 57 chr6 93281462 93287914 -95991640 - L1PA7 LINE L1 -2 6152 2 235 224 122 0 chr6 93289394 93289443 -95990111 + MIR SINE MIR 118 172 -90 378 247 21 0 chr6 93289484 93289577 -95989977 + MLT1J2 LTR MaLR 69 163 -287 393 235 0 0 chr6 93289777 93289862 -95989692 + MIR SINE MIR 166 250 -12 1345 238 30 7 chr6 93289922 93290225 -95989329 + AluJo SINE Alu 3 312 0 328 248 152 0 chr6 93291597 93291702 -95987852 + L3 LINE CR1 704 824 -753 560 273 113 75 chr6 93291892 93292398 -95987156 + L1MC4a LINE L1 5425 5949 -1859 450 243 0 10 chr6 93294709 93294812 -95984742 - Tigger7 DNA MER2_type 0 2491 2390 1277 243 4 0 chr6 93294812 93295075 -95984479 - Tigger7 DNA MER2_type -469 264 1 281 313 156 31 chr6 93295229 93295389 -95984165 + MIR SINE MIR 12 191 -71 261 218 218 0 chr6 93295726 93295813 -95983741 - MER117 DNA MER1_type -87 110 5 819 211 23 12 chr6 93295825 93295996 -95983558 + MER5A DNA MER1_type 1 173 -16 202 269 167 0 chr6 93296063 93296141 -95983413 - MIR SINE MIR -8 254 164 212 196 0 18 chr6 93296193 93296249 -95983305 + GA-rich Low_complexity Low_complexity 2 56 0 316 323 83 8 chr6 93298261 93298394 -95981160 - MIR SINE MIR -16 246 104 568 241 37 37 chr6 93298689 93298851 -95980703 - MIR SINE MIR -42 220 59 798 242 69 22 chr6 93298936 93299167 -95980387 - MLT1I LTR MaLR -167 242 1 219 314 77 58 chr6 93299294 93299501 -95980053 - L2 LINE L2 -485 2829 2619 373 361 147 16 chr6 93299733 93300354 -95979200 - L2 LINE L2 -900 2414 1713 2465 260 103 38 chr6 93302213 93302244 -95977310 - L1MC4a LINE L1 -172 7636 7608 210 37 0 0 chr6 93302244 93302271 -95977283 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2465 260 103 38 chr6 93302271 93303384 -95976170 - L1MC4a LINE L1 -200 7608 6418 415 247 74 81 chr6 93303413 93303684 -95975870 - L1MC4a LINE L1 -1457 6351 6083 838 247 118 79 chr6 93303807 93304249 -95975305 - L1MC4a LINE L1 -1883 5925 5467 208 232 18 54 chr6 93304257 93304313 -95975241 - MER5B DNA MER1_type -123 55 2 508 235 44 60 chr6 93304683 93304776 -95974778 + MER104 DNA MER2_type 1 91 -1807 2202 122 0 0 chr6 93304776 93305079 -95974475 - AluSg SINE Alu -6 304 2 508 235 44 60 chr6 93305079 93305168 -95974386 + MER104 DNA MER2_type 91 180 0 1812 205 58 22 chr6 93305183 93305631 -95973923 - MLT1C LTR MaLR 0 467 4 2426 168 26 0 chr6 93305732 93306149 -95973405 - MSTA LTR MaLR 0 428 1 2227 89 7 0 chr6 93306231 93306524 -95973030 - AluSc SINE Alu -14 295 1 302 324 53 18 chr6 93306674 93306844 -95972710 + L1M4 LINE L1 4698 4873 -1273 2562 61 0 3 chr6 93307213 93307525 -95972029 + AluY SINE Alu 1 311 0 601 186 103 6 chr6 93308133 93308289 -95971265 - L1MB3 LINE L1 -2 6181 6011 285 256 105 101 chr6 93308704 93308962 -95970592 - L2 LINE L2 -86 3186 2928 5524 80 14 0 chr6 93310031 93310773 -95968781 + L1P LINE L1 3555 4306 -1840 272 238 0 32 chr6 93311075 93311138 -95968416 - MLT1L LTR MaLR -420 195 135 254 315 87 33 chr6 93311146 93311238 -95968316 + MER91A DNA MER1_type 100 196 0 662 224 75 56 chr6 93311498 93311712 -95967842 + LTR33 LTR ERVL 304 521 0 223 203 0 17 chr6 93312546 93312605 -95966949 + A-rich Low_complexity Low_complexity 4 61 0 21 36 0 0 chr6 93312638 93312666 -95966888 + AT_rich Low_complexity Low_complexity 1 28 0 325 300 63 56 chr6 93314473 93314743 -95964811 - L1MB3 LINE L1 -294 5827 5556 660 280 151 0 chr6 93315035 93315260 -95964294 - MIR SINE MIR -2 260 2 21 0 0 0 chr6 93315664 93315685 -95963869 + AT_rich Low_complexity Low_complexity 1 21 0 313 107 54 0 chr6 93315706 93315762 -95963792 - L1MB1 LINE L1 -2 6166 6108 2401 83 3 0 chr6 93315933 93316235 -95963319 + AluSq SINE Alu 3 305 -8 577 152 30 18 chr6 93318233 93318398 -95961156 + CT-rich Low_complexity Low_complexity 2 168 0 357 293 36 90 chr6 93319504 93319838 -95959716 - L2 LINE L2 0 3313 2998 277 360 122 6 chr6 93320380 93320544 -95959010 - MIR SINE MIR -48 214 32 3214 151 18 50 chr6 93320584 93321238 -95958316 - L1MA8 LINE L1 -5 6286 5654 3120 60 0 0 chr6 93321788 93322185 -95957369 + L1PA7 LINE L1 5758 6154 0 267 344 128 9 chr6 93323956 93324183 -95955371 - L2 LINE L2 -345 2969 2716 700 231 23 35 chr6 93325964 93326137 -95953417 + MER63A DNA MER1_type 40 210 0 343 348 81 45 chr6 93326679 93326926 -95952628 - MIR SINE MIR 0 262 7 2176 122 0 3 chr6 93327033 93327328 -95952226 - AluSx SINE Alu -17 295 2 3266 28 3 0 chr6 93328630 93329017 -95950537 + L1PA4 LINE L1 5765 6152 -3 306 0 0 0 chr6 93329890 93329924 -95949630 + (TG)n Simple_repeat Simple_repeat 2 35 0 201 350 10 21 chr6 93330698 93330795 -95948759 + MIR SINE MIR 57 152 -110 392 242 52 117 chr6 93333540 93333771 -95945783 + L2 LINE L2 3097 3312 -1 206 233 137 0 chr6 93334822 93334895 -95944659 - L2 LINE L2 -4 3268 3186 374 326 54 0 chr6 93334939 93335068 -95944486 - MIR SINE MIR -74 188 53 1718 173 64 0 chr6 93335324 93335607 -95943947 + AluJb SINE Alu 1 301 -11 242 229 100 0 chr6 93336314 93336384 -95943170 - HsTC2 DNA Tc2 -1821 77 1 2123 173 28 23 chr6 93336399 93336797 -95942757 - MLT2D LTR ERVL -13 401 2 2076 132 0 0 chr6 93336797 93337099 -95942455 + AluSc SINE Alu 1 302 0 22 0 0 0 chr6 93337838 93337860 -95941694 + AT_rich Low_complexity Low_complexity 1 22 0 462 306 12 6 chr6 93337895 93338055 -95941499 + MIR SINE MIR 101 261 -1 27 0 0 0 chr6 93338707 93338734 -95940820 + AT_rich Low_complexity Low_complexity 1 27 0 6557 80 11 0 chr6 93338734 93339927 -95939627 - L1PA7 LINE L1 -13 6141 4942 240 111 0 0 chr6 93340219 93340255 -95939299 - U6 snRNA snRNA -71 36 1 2176 158 32 24 chr6 93341879 93341957 -95937597 + L1MB3 LINE L1 5704 5780 -403 1486 105 18 0 chr6 93341957 93342179 -95937375 + L1PA14 LINE L1 5927 6159 -2 2176 158 32 24 chr6 93342179 93342510 -95937044 + L1MB3 LINE L1 5780 6116 -67 239 207 268 12 chr6 93343037 93343119 -95936435 - MER5A DNA MER1_type -83 106 4 453 128 143 68 chr6 93345218 93345351 -95934203 + FLAM_C SINE Alu 1 143 0 6012 213 34 35 chr6 93345369 93348085 -95931469 - L1MD1 LINE L1 -51 6585 3869 5275 214 136 40 chr6 93348075 93348321 -95931233 - L1MD1 LINE L1 -3954 2586 2365 * 529 37 73 0 chr6 93348321 93348430 -95931124 + (TA)n Simple_repeat Simple_repeat 2 118 0 5275 214 136 40 chr6 93348430 93350464 -95929090 - L1MD1 LINE L1 -4175 2365 18 416 318 150 5 chr6 93351325 93351545 -95928009 + MIR SINE MIR 8 259 -3 630 89 0 0 chr6 93353034 93353124 -95926430 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 220 145 16 16 chr6 93353129 93353191 -95926363 + GA-rich Low_complexity Low_complexity 1 62 0 269 291 101 0 chr6 93354011 93354090 -95925464 + L2 LINE L2 3186 3272 0 6882 37 6 23 chr6 93354255 93355357 -95924197 + L1PA5 LINE L1 5022 6102 -52 207 0 0 0 chr6 93355469 93355492 -95924062 + (CA)n Simple_repeat Simple_repeat 2 24 0 965 192 0 0 chr6 93356715 93356882 -95922672 + AluJb SINE Alu 145 311 -1 289 291 10 19 chr6 93357529 93357632 -95921922 + L1ME4a LINE L1 5950 6051 -70 5524 195 35 80 chr6 93357656 93358936 -95920618 - L1MB7 LINE L1 -19 6401 5065 2272 109 3 0 chr6 93358936 93359239 -95920315 + AluSq SINE Alu 1 304 -9 5524 195 35 80 chr6 93359239 93360156 -95919398 - L1MB7 LINE L1 -1355 5065 4108 591 122 0 0 chr6 93360156 93360281 -95919273 + AluY SINE Alu 201 325 0 5524 195 35 80 chr6 93360281 93360454 -95919100 - L1MB7 LINE L1 -2312 4108 3929 2176 235 110 11 chr6 93360454 93361080 -95918474 - MER76 LTR ERV 0 688 1 5524 195 35 80 chr6 93361080 93361585 -95917969 - L1MB7 LINE L1 -2491 3929 3585 2638 242 76 23 chr6 93361584 93362530 -95917024 - L1MB7 LINE L1 -4656 1728 733 * 10301 174 53 7 chr6 93362728 93365530 -95914024 + L1MA4 LINE L1 3081 6016 -284 25 0 0 0 chr6 93365592 93365617 -95913937 + AT_rich Low_complexity Low_complexity 1 25 0 583 286 59 0 chr6 93366225 93366409 -95913145 - MIR SINE MIR -48 214 16 250 171 34 80 chr6 93366744 93366832 -95912722 + MLT1J2 LTR MaLR 365 448 -2 1265 219 147 32 chr6 93367883 93368230 -95911324 - MSTD LTR MaLR 0 396 10 1571 168 30 49 chr6 93368261 93368565 -95910989 - AluJb SINE Alu -14 298 1 486 214 65 26 chr6 93368956 93369110 -95910444 - LTR33 LTR ERVL -361 160 1 564 280 93 9 chr6 93369157 93369371 -95910183 - MIR SINE MIR -2 260 29 191 362 0 0 chr6 93369385 93369454 -95910100 - MIR SINE MIR -59 149 81 1475 250 188 20 chr6 93370155 93371085 -95908469 - L2 LINE L2 0 3313 2069 1967 180 48 2 chr6 93371419 93371836 -95907718 - MER63B DNA MER1_type 0 436 1 406 267 83 8 chr6 93373754 93373874 -95905680 - MER5B DNA MER1_type -3 175 47 2182 141 33 11 chr6 93373924 93374285 -95905269 + MLT1B LTR MaLR 22 390 0 653 205 117 18 chr6 93374333 93374504 -95905050 - MER5A DNA MER1_type -1 188 1 189 0 0 0 chr6 93374947 93374968 -95904586 + (TAA)n Simple_repeat Simple_repeat 2 22 0 241 347 0 0 chr6 93375273 93375348 -95904206 + L2 LINE L2 3235 3309 -4 217 326 133 0 chr6 93375379 93375477 -95904077 + L2 LINE L2 2914 3024 -248 467 316 29 0 chr6 93375695 93375831 -95903723 + MER5B DNA MER1_type 39 178 0 24 0 0 0 chr6 93376885 93376909 -95902645 + AT_rich Low_complexity Low_complexity 1 24 0 454 269 31 0 chr6 93377152 93377282 -95902272 - MER94 DNA DNA 0 134 1 1025 205 49 0 chr6 93377680 93377885 -95901669 + AluJo SINE Alu 1 215 -97 247 292 19 99 chr6 93377956 93378117 -95901437 + MIR SINE MIR 4 150 -60 1603 190 17 0 chr6 93378402 93378691 -95900863 - AluJo SINE Alu -8 304 11 503 254 158 30 chr6 93379070 93379235 -95900319 + MER5A DNA MER1_type 4 189 0 632 278 56 32 chr6 93380027 93380279 -95899275 + MIR SINE MIR 1 258 -4 224 208 0 21 chr6 93380735 93380783 -95898771 - L2 LINE L2 -38 3275 3229 724 204 120 11 chr6 93381347 93381538 -95898016 + MLT1H LTR MaLR 1 212 -337 355 324 75 6 chr6 93381655 93381828 -95897726 + MLT1H LTR MaLR 359 543 -6 2256 219 108 44 chr6 93382036 93382815 -95896739 + MER63C DNA MER1_type 49 877 -53 24 0 0 0 chr6 93382843 93382867 -95896687 + AT_rich Low_complexity Low_complexity 1 24 0 238 293 0 0 chr6 93382938 93382996 -95896558 - MIR SINE MIR -2 260 203 502 316 36 19 chr6 93384411 93384635 -95894919 + MIR SINE MIR 4 226 -36 254 259 0 62 chr6 93385541 93385622 -95893932 - MER69 DNA AcHobo -9 2517 2442 27 29 0 0 chr6 93385648 93385682 -95893872 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr6 93386274 93386310 -95893244 + AT_rich Low_complexity Low_complexity 1 36 0 248 167 19 0 chr6 93386367 93386421 -95893133 + (CA)n Simple_repeat Simple_repeat 2 56 0 1731 189 70 6 chr6 93386688 93387031 -95892523 - MLT1A1 LTR MaLR 0 365 1 1968 196 30 37 chr6 93387542 93387975 -95891579 + MSTB1 LTR MaLR 3 432 0 556 319 78 35 chr6 93388023 93388368 -95891186 - L1ME4a LINE L1 -7 6114 5755 428 302 16 0 chr6 93388368 93388497 -95891057 - LTR33 LTR ERVL 0 521 391 735 278 72 10 chr6 93388593 93388802 -95890752 - LTR33 LTR ERVL -299 222 1 195 42 0 0 chr6 93389848 93389872 -95889682 + (TTG)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr6 93389873 93389894 -95889660 + (TG)n Simple_repeat Simple_repeat 2 22 0 1647 239 24 92 chr6 93389949 93390668 -95888886 - L1ME4a LINE L1 -943 5203 4534 * 4661 177 61 16 chr6 93390664 93391668 -95887886 + L1MA10 LINE L1 5279 6327 -7 24 32 0 0 chr6 93392005 93392036 -95887518 + AT_rich Low_complexity Low_complexity 1 31 0 2725 217 59 40 chr6 93392489 93393234 -95886320 - L1MD2 LINE L1 -2 6357 5599 284 279 157 21 chr6 93393328 93393628 -95885926 - L1ME LINE L1 -482 5639 5306 222 128 0 0 chr6 93393654 93393693 -95885861 + (TG)n Simple_repeat Simple_repeat 2 40 0 239 266 0 89 chr6 93396185 93396264 -95883290 - L2 LINE L2 0 3272 3201 538 298 95 18 chr6 93396279 93396564 -95882990 + L1MC4a LINE L1 5620 5926 -1882 211 125 25 0 chr6 93396567 93396607 -95882947 + (CA)n Simple_repeat Simple_repeat 1 41 0 456 216 144 72 chr6 93397715 93397868 -95881686 - MIR SINE MIR -17 245 82 951 283 111 31 chr6 93398309 93398881 -95880673 + L2 LINE L2 2701 3308 -5 318 316 60 8 chr6 93398960 93399095 -95880459 - MIR SINE MIR -62 146 2 1137 240 16 8 chr6 93399243 93399501 -95880053 - MIR SINE MIR -1 261 2 234 297 38 69 chr6 93400637 93400824 -95878730 + MIR SINE MIR 16 206 -56 492 313 52 30 chr6 93402139 93402372 -95877182 + MIR SINE MIR 13 250 -12 204 227 0 0 chr6 93403181 93403225 -95876329 + (TATG)n Simple_repeat Simple_repeat 4 47 0 189 267 50 0 chr6 93403338 93403398 -95876156 + MIR3 SINE MIR 120 182 -26 184 400 0 0 chr6 93404177 93404252 -95875302 + L3 LINE CR1 766 840 -737 240 333 34 26 chr6 93404399 93404516 -95875038 - MIR SINE MIR -136 126 9 983 316 74 70 chr6 93404628 93405226 -95874328 + L3 LINE CR1 978 1577 0 227 193 12 145 chr6 93405386 93405464 -95874090 - MLT1G LTR MaLR -134 456 390 1143 210 25 10 chr6 93405464 93405571 -95873983 + MER33 DNA MER1_type 1 91 -2494 423 38 0 0 chr6 93405571 93405624 -95873930 + (CA)n Simple_repeat Simple_repeat 2 54 0 1143 210 25 10 chr6 93405624 93405843 -95873711 + MER33 DNA MER1_type 91 318 -6 762 218 157 138 chr6 93405882 93405916 -95873638 - MLT1G LTR MaLR -225 370 338 2401 111 13 24 chr6 93405916 93406295 -95873259 + THE1C LTR MaLR 1 375 0 762 218 157 138 chr6 93406295 93406623 -95872931 - MLT1G LTR MaLR -257 338 1 22 56 0 0 chr6 93407517 93407553 -95872001 + AT_rich Low_complexity Low_complexity 1 36 0 2472 79 0 0 chr6 93408079 93408382 -95871172 - AluY SINE Alu -8 303 1 256 221 180 25 chr6 93408685 93408807 -95870747 + MIR SINE MIR 122 262 0 306 50 0 0 chr6 93409018 93409058 -95870496 + (TG)n Simple_repeat Simple_repeat 1 40 0 607 234 163 40 chr6 93409183 93409410 -95870144 + MIR SINE MIR 8 262 0 323 296 111 9 chr6 93409744 93409852 -95869702 - MIR SINE MIR -19 243 125 2178 167 22 22 chr6 93410831 93411216 -95868338 + MSTB LTR MaLR 1 388 -38 2033 137 19 43 chr6 93411216 93411589 -95867965 + THE1B LTR MaLR 1 364 0 2178 167 22 22 chr6 93411589 93411616 -95867938 + MSTB LTR MaLR 387 413 -13 888 157 43 0 chr6 93411701 93411841 -95867713 - AluSg/x SINE Alu -26 284 139 1958 162 6 13 chr6 93412084 93412454 -95867100 - AluSx SINE Alu 0 368 1 228 35 0 0 chr6 93412971 93413000 -95866554 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 1146 223 89 0 chr6 93413560 93413897 -95865657 - MER58D DNA MER1_type -15 371 5 549 266 65 52 chr6 93414794 93415023 -95864531 + MIR SINE MIR 20 251 -11 569 290 69 43 chr6 93415128 93415263 -95864291 - L2 LINE L2 -8 3305 3175 186 71 0 0 chr6 93415263 93415291 -95864263 + (TAAAA)n Simple_repeat Simple_repeat 4 31 0 569 290 69 43 chr6 93415291 93415431 -95864123 - L2 LINE L2 -138 3175 3023 320 120 0 0 chr6 93415460 93415510 -95864044 + MER53 DNA DNA 1 50 -139 182 37 37 0 chr6 93415912 93415939 -95863615 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr6 93416124 93416147 -95863407 + AT_rich Low_complexity Low_complexity 1 23 0 818 138 16 0 chr6 93416147 93416270 -95863284 - L1PA10 LINE L1 -4 6164 6040 354 298 0 19 chr6 93416449 93416553 -95863001 + L2 LINE L2 3206 3307 -6 444 259 119 55 chr6 93416696 93416932 -95862622 + MIR SINE MIR 10 260 -2 1104 247 86 51 chr6 93417796 93418282 -95861272 + MLT1D LTR MaLR 1 503 -2 894 251 21 33 chr6 93418406 93418649 -95860905 - MIR SINE MIR -15 247 8 377 277 181 12 chr6 93419233 93419399 -95860155 - MIR SINE MIR -27 235 42 318 202 31 11 chr6 93419741 93419865 -95859689 + MER69 DNA AcHobo 1 174 -2352 871 162 32 19 chr6 93419867 93420021 -95859533 + FRAM SINE Alu 1 156 -20 916 270 154 28 chr6 93420021 93420450 -95859104 + MER69 DNA AcHobo 164 646 -1880 848 168 125 19 chr6 93420461 93420717 -95858837 + MER69 DNA AcHobo 2243 2525 -1 1692 40 2 2 chr6 93422907 93423157 -95856397 + MER11B LTR ERVK 750 1139 -97 241 246 33 0 chr6 93423222 93423283 -95856271 + MER112 DNA MER1_type 197 259 -1 649 349 75 21 chr6 93423290 93423789 -95855765 + L2 LINE L2 2595 3114 -199 193 206 16 79 chr6 93425310 93425373 -95854181 - MIR SINE MIR -19 243 185 230 250 0 0 chr6 93426094 93426142 -95853412 + CT-rich Low_complexity Low_complexity 2 49 0 25 0 0 0 chr6 93426451 93426476 -95853078 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 93428157 93428179 -95851375 + AT_rich Low_complexity Low_complexity 1 22 0 198 318 30 15 chr6 93430708 93430774 -95848780 + MIR SINE MIR 49 115 -93 328 265 171 43 chr6 93431995 93432206 -95847348 + MIR SINE MIR 25 262 0 196 227 23 0 chr6 93432769 93432813 -95846741 - L2 LINE L2 -5 3308 3264 182 243 71 14 chr6 93433186 93433256 -95846298 + MER5A DNA MER1_type 1 74 -115 182 279 0 0 chr6 93433215 93433258 -95846296 - MER5A DNA MER1_type -22 167 125 336 221 63 0 chr6 93433529 93433656 -95845898 + CT-rich Low_complexity Low_complexity 1 135 0 373 307 132 5 chr6 93433760 93433949 -95845605 + MIR SINE MIR 37 249 -13 199 316 53 0 chr6 93434270 93434327 -95845227 + L2 LINE L2 3235 3294 -19 258 194 0 0 chr6 93436589 93436661 -95842893 + (CGG)n Simple_repeat Simple_repeat 2 73 0 204 40 0 0 chr6 93439019 93439044 -95840510 + (A)n Simple_repeat Simple_repeat 1 25 0 180 221 39 0 chr6 93439971 93440048 -95839506 + (TA)n Simple_repeat Simple_repeat 1 80 0 201 74 0 0 chr6 93440252 93440279 -95839275 + (T)n Simple_repeat Simple_repeat 1 27 0 26 64 0 0 chr6 93440591 93440638 -95838916 + AT_rich Low_complexity Low_complexity 1 47 0 351 0 0 0 chr6 93443444 93443483 -95836071 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 57 0 0 chr6 93444107 93444142 -95835412 + AT_rich Low_complexity Low_complexity 1 35 0 2839 146 169 103 chr6 93444310 93444687 -95834867 + L1MC3 LINE L1 6707 7058 -727 306 244 0 12 chr6 93444687 93444769 -95834785 + MLT1F1 LTR MaLR 45 125 -442 2839 146 169 103 chr6 93444769 93445322 -95834232 + L1MC3 LINE L1 7058 7785 0 2371 88 3 0 chr6 93445330 93445625 -95833929 + AluSc SINE Alu 1 296 -13 2304 70 3 7 chr6 93446180 93446480 -95833074 - AluY SINE Alu -12 299 1 237 165 88 88 chr6 93447125 93447216 -95832338 + MER53 DNA DNA 1 91 -98 25 31 0 0 chr6 93447216 93447248 -95832306 + AT_rich Low_complexity Low_complexity 1 32 0 220 102 96 32 chr6 93447256 93447413 -95832141 + (TA)n Simple_repeat Simple_repeat 2 168 0 386 118 94 35 chr6 93447426 93447596 -95831958 + (TA)n Simple_repeat Simple_repeat 1 180 0 189 96 88 32 chr6 93447608 93447733 -95831821 + (TA)n Simple_repeat Simple_repeat 1 132 0 236 47 58 88 chr6 93447746 93447917 -95831637 + (TA)n Simple_repeat Simple_repeat 1 166 0 21 89 0 0 chr6 93447874 93447930 -95831624 + AT_rich Low_complexity Low_complexity 1 56 0 * 270 164 104 0 chr6 93447933 93448000 -95831554 + MER53 DNA DNA 116 189 0 196 267 50 17 chr6 93448153 93448213 -95831341 - L2 LINE L2 -5 3267 3206 1233 143 79 12 chr6 93448271 93448523 -95831031 + L1MA9 LINE L1 6044 6312 0 761 309 31 71 chr6 93449468 93449888 -95829666 + L2 LINE L2 2911 3313 0 195 42 0 0 chr6 93450328 93450352 -95829202 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 227 224 13 66 chr6 93451277 93451353 -95828201 - MIR SINE MIR -72 190 119 254 348 13 52 chr6 93452982 93453137 -95826417 + LTR33 LTR ERVL 2 150 -371 1844 170 3 6 chr6 93453281 93453593 -95825961 + AluJb SINE Alu 1 311 -1 259 261 193 68 chr6 93453852 93454028 -95825526 + MIR SINE MIR 9 206 -56 343 276 79 0 chr6 93454162 93454238 -95825316 + L2 LINE L2 3191 3272 0 251 286 0 0 chr6 93454653 93454709 -95824845 + MER5A DNA MER1_type 134 189 0 365 285 93 0 chr6 93454779 93454839 -95824715 + MER112 DNA MER1_type 95 148 -112 189 74 0 0 chr6 93454839 93454866 -95824688 + (CTATT)n Simple_repeat Simple_repeat 4 30 0 365 285 93 0 chr6 93454866 93454956 -95824598 + MER112 DNA MER1_type 148 259 -1 201 200 129 35 chr6 93455022 93455107 -95824447 - MIR SINE MIR -50 212 120 218 346 28 37 chr6 93455201 93455308 -95824246 + MIR3 SINE MIR 53 158 -50 26 64 0 0 chr6 93455443 93455490 -95824064 + AT_rich Low_complexity Low_complexity 1 47 0 537 280 116 4 chr6 93455497 93455729 -95823825 - MIR SINE MIR -2 260 3 705 211 115 118 chr6 93456378 93456908 -95822646 - MLT1G1 LTR MaLR 0 587 7 396 277 28 21 chr6 93457748 93457889 -95821665 + L3b LINE CR1 1102 1243 -340 21 0 0 0 chr6 93458243 93458264 -95821290 + AT_rich Low_complexity Low_complexity 1 21 0 560 168 47 9 chr6 93458965 93459072 -95820482 - MLT1A1 LTR MaLR 0 365 255 683 154 44 7 chr6 93459076 93459212 -95820342 - MLT1A1 LTR MaLR -224 141 1 253 289 60 0 chr6 93459971 93460054 -95819500 + MIR SINE MIR 105 192 -70 1038 271 118 18 chr6 93460259 93460837 -95818717 - L2 LINE L2 -4 3309 2669 24 0 0 0 chr6 93462324 93462348 -95817206 + AT_rich Low_complexity Low_complexity 1 24 0 1996 72 0 0 chr6 93462369 93462634 -95816920 - L1MA2 LINE L1 -67 6237 5973 828 264 143 74 chr6 93463107 93463610 -95815944 - MLT1H LTR MaLR 0 549 12 445 270 66 26 chr6 93463615 93463767 -95815787 - MIR SINE MIR -98 164 7 191 379 121 0 chr6 93464126 93464242 -95815312 + L2 LINE L2 3182 3311 -2 259 350 50 31 chr6 93466075 93466235 -95813319 + MER5A DNA MER1_type 21 183 -6 * 337 343 52 17 chr6 93466232 93466404 -95813150 + MIR SINE MIR 50 227 -35 463 261 80 51 chr6 93466926 93467102 -95812452 - L2 LINE L2 0 3313 3133 2367 269 128 25 chr6 93467213 93468158 -95811396 - L2 LINE L2 -468 2846 1805 494 174 9 0 chr6 93468386 93468495 -95811059 + GA-rich Low_complexity Low_complexity 4 113 0 494 291 81 7 chr6 93468548 93468696 -95810858 - MIR SINE MIR -66 196 38 263 310 132 23 chr6 93471812 93471941 -95807613 + MIR3 SINE MIR 34 176 -32 429 311 25 66 chr6 93474287 93474468 -95805086 + MIR SINE MIR 1 171 -91 4451 140 79 13 chr6 93474468 93475299 -95804255 - L1MC1 LINE L1 -2 6331 5446 429 311 25 66 chr6 93475299 93475358 -95804196 + MIR SINE MIR 171 231 -31 639 315 62 70 chr6 93475411 93476053 -95803501 + L1MEc LINE L1 9 645 -5751 28 29 0 0 chr6 93476095 93476130 -95803424 + AT_rich Low_complexity Low_complexity 1 35 0 5059 103 12 1 chr6 93476130 93476870 -95802684 - L1PA12 LINE L1 -4 6164 5417 2120 90 0 0 chr6 93476883 93477172 -95802382 - L1PA7 LINE L1 -4 6150 5862 3547 159 46 1 chr6 93477172 93477852 -95801702 - L1PA12 LINE L1 -877 5269 4560 1798 117 16 49 chr6 93477855 93478162 -95801392 - L1PB4 LINE L1 -18 6138 5842 2941 122 12 129 chr6 93478162 93478930 -95800624 + L1PB4 LINE L1 5311 6144 -12 526 218 45 0 chr6 93478930 93479040 -95800514 - MER7A DNA MER2_type -232 114 2 3039 224 94 27 chr6 93479041 93479953 -95799601 + L1ME1 LINE L1 4774 5812 -354 3471 157 31 3 chr6 93479953 93480571 -95798983 + MER41B LTR ERV1 1 635 0 3039 224 94 27 chr6 93480571 93480947 -95798607 + L1ME1 LINE L1 5812 6161 -5 29 28 0 0 chr6 93481108 93481144 -95798410 + AT_rich Low_complexity Low_complexity 1 36 0 199 270 56 22 chr6 93481828 93481917 -95797637 - MIR SINE MIR -55 207 116 21 36 0 0 chr6 93482032 93482060 -95797494 + AT_rich Low_complexity Low_complexity 1 28 0 480 203 7 26 chr6 93483760 93483913 -95795641 + CT-rich Low_complexity Low_complexity 4 153 0 2389 106 6 11 chr6 93485188 93485545 -95794009 - THE1A LTR MaLR 0 355 1 243 208 57 0 chr6 93485829 93485882 -95793672 + MIR SINE MIR 93 148 -114 203 259 17 35 chr6 93486219 93486335 -95793219 + (TCTA)n Simple_repeat Simple_repeat 1 114 0 243 312 114 15 chr6 93486511 93486713 -95792841 - L1ME LINE L1 -340 5781 5560 805 195 23 65 chr6 93488358 93488573 -95790981 - MER3 DNA MER1_type 0 209 4 1519 236 114 48 chr6 93489294 93489853 -95789701 + L1ME3A LINE L1 5009 5651 -519 180 0 0 0 chr6 93489853 93489873 -95789681 + (TA)n Simple_repeat Simple_repeat 1 20 0 1519 236 114 48 chr6 93489873 93490268 -95789286 + L1ME3A LINE L1 5651 6018 -152 501 284 59 15 chr6 93492737 93492941 -95786613 + L1ME3A LINE L1 5950 6162 -8 243 372 107 19 chr6 93493010 93493373 -95786181 - L2 LINE L2 -787 2527 2133 192 40 0 0 chr6 93493460 93493485 -95786069 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 24 53 0 0 chr6 93493697 93493735 -95785819 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr6 93494047 93494070 -95785484 + AT_rich Low_complexity Low_complexity 1 23 0 438 286 58 116 chr6 93495890 93496368 -95783186 - LTR33 LTR ERVL -2 519 76 1798 165 7 3 chr6 93496368 93496659 -95782895 + AluJb SINE Alu 3 294 -18 438 286 58 116 chr6 93496659 93496730 -95782824 - LTR33 LTR ERVL -445 76 2 226 288 125 0 chr6 93497116 93497196 -95782358 - L3 LINE CR1 -807 770 681 23 33 0 0 chr6 93497513 93497543 -95782011 + AT_rich Low_complexity Low_complexity 1 30 0 1264 169 36 66 chr6 93497580 93497881 -95781673 - AluJo SINE Alu -14 298 7 284 352 219 4 chr6 93498946 93499193 -95780361 + L3 LINE CR1 1062 1361 -216 188 267 0 0 chr6 93500779 93500824 -95778730 - L2 LINE L2 -18 3295 3251 * 517 274 103 23 chr6 93500790 93500965 -95778589 - MIR SINE MIR -23 239 51 28 0 0 0 chr6 93501416 93501444 -95778110 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 93501543 93501564 -95777990 + AT_rich Low_complexity Low_complexity 1 21 0 481 308 7 28 chr6 93501913 93502056 -95777498 - MER5B DNA MER1_type 0 178 39 1153 325 88 4 chr6 93502266 93502734 -95776820 - L2 LINE L2 -497 2817 2311 882 156 11 6 chr6 93505679 93505858 -95773696 + CT-rich Low_complexity Low_complexity 1 180 0 4150 149 21 1 chr6 93507890 93508356 -95771198 - L1PA16 LINE L1 -14 6152 5697 1077 72 36 0 chr6 93508356 93508522 -95771032 + (TTTC)n Simple_repeat Simple_repeat 2 173 0 1767 170 20 13 chr6 93508525 93508825 -95770729 - AluJb SINE Alu -9 303 2 4150 149 21 1 chr6 93508825 93509057 -95770497 - L1PA16 LINE L1 -470 5696 5436 733 115 15 23 chr6 93509060 93509190 -95770364 - L1PB1 LINE L1 0 6151 6023 10212 210 24 24 chr6 93509190 93511449 -95768105 - L1PA16 LINE L1 -733 5433 3182 2389 89 7 0 chr6 93511449 93511753 -95767801 - AluSc SINE Alu -3 306 1 10212 210 24 24 chr6 93511753 93512247 -95767307 - L1PA16 LINE L1 -2984 3182 2689 794 237 6 0 chr6 93512399 93512555 -95766999 - FAM SINE Alu -18 157 1 1294 204 19 0 chr6 93513072 93513341 -95766213 + Tigger1 DNA MER2_type 4 277 -2141 461 134 175 0 chr6 93513338 93513435 -95766119 + Tigger1 DNA MER2_type 2142 2255 -163 * 6092 131 35 12 chr6 93513437 93514311 -95765243 - L1MA3 LINE L1 0 6305 5452 2077 130 47 39 chr6 93514311 93514672 -95764882 + THE1B LTR MaLR 1 364 0 11086 95 33 3 chr6 93514672 93516206 -95763348 + THE1B-int LTR MaLR 1 1580 0 2133 123 48 28 chr6 93516206 93516563 -95762991 + THE1B LTR MaLR 1 364 0 6092 131 35 12 chr6 93516563 93517188 -95762366 - L1MA3 LINE L1 -852 5453 4771 1020 157 6 22 chr6 93517190 93517368 -95762186 + Tigger1 DNA MER2_type 2239 2413 -5 239 359 111 0 chr6 93517570 93517687 -95761867 - L2 LINE L2 -50 3222 3093 654 252 164 75 chr6 93519125 93519231 -95760323 - LTR16A1 LTR ERVL 0 457 362 1986 136 23 10 chr6 93519231 93519539 -95760015 + AluSx SINE Alu 1 312 0 654 252 164 75 chr6 93519539 93519805 -95759749 - LTR16A1 LTR ERVL -95 362 52 2061 127 0 36 chr6 93520110 93520417 -95759137 - AluSx SINE Alu -16 296 1 232 293 43 52 chr6 93520674 93520790 -95758764 + L2 LINE L2 3149 3263 -50 368 327 104 18 chr6 93521390 93521610 -95757944 + MIR SINE MIR 20 258 -4 338 289 139 28 chr6 93521808 93521988 -95757566 - MIR SINE MIR -26 236 37 2135 128 32 32 chr6 93522458 93522833 -95756721 + THE1C LTR MaLR 1 375 0 779 206 48 14 chr6 93522873 93523019 -95756535 + FRAM SINE Alu 2 152 -14 10967 30 0 5 chr6 93523026 93524341 -95755213 - L1PA2 LINE L1 -1405 4741 3433 7897 11 1 0 chr6 93524342 93525730 -95753824 + L1PA2 LINE L1 4767 6155 0 1238 121 21 0 chr6 93525730 93525920 -95753634 + MSTA LTR MaLR 187 380 -48 925 178 57 0 chr6 93525937 93526094 -95753460 + AluJo SINE Alu 123 288 -24 37 62 0 0 chr6 93527306 93527371 -95752183 + AT_rich Low_complexity Low_complexity 1 65 0 279 317 50 43 chr6 93527934 93528095 -95751459 - MIR SINE MIR -56 206 45 28 99 0 0 chr6 93528098 93528189 -95751365 + AT_rich Low_complexity Low_complexity 1 91 0 547 100 0 0 chr6 93528370 93528450 -95751104 + MADE1 DNA Mariner 1 80 0 240 331 132 12 chr6 93528828 93529079 -95750475 + L1ME4a LINE L1 5742 6022 -99 24 53 0 0 chr6 93529919 93529957 -95749597 + AT_rich Low_complexity Low_complexity 1 38 0 351 279 162 22 chr6 93531614 93531843 -95747711 - MIR SINE MIR 0 262 2 254 336 164 7 chr6 93532374 93532514 -95747040 + MIR SINE MIR 25 186 -76 302 253 209 0 chr6 93533101 93533192 -95746362 + MER81 DNA DNA 5 114 0 1825 160 0 17 chr6 93534303 93534614 -95744940 + AluSx SINE Alu 1 306 0 769 312 47 40 chr6 93534862 93535396 -95744158 + MLT1L LTR MaLR 43 606 -9 40 59 0 0 chr6 93535407 93535475 -95744079 + AT_rich Low_complexity Low_complexity 1 68 0 3562 63 25 0 chr6 93536322 93536795 -95742759 + L1PA13 LINE L1 5676 6160 -3 335 210 62 0 chr6 93537041 93537122 -95742432 - L1ME1 LINE L1 -17 6149 6064 200 31 62 0 chr6 93537448 93537480 -95742074 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 861 325 43 30 chr6 93537635 93538004 -95741550 - L2 LINE L2 -5 3308 2935 2800 122 137 4 chr6 93538004 93538463 -95741091 - MLT2B1 LTR ERVL 0 520 1 687 327 44 32 chr6 93538463 93538802 -95740752 - L2 LINE L2 -374 2940 2598 1083 300 206 19 chr6 93538864 93539557 -95739997 - L2 LINE L2 -970 2344 1522 5288 122 33 50 chr6 93540128 93541062 -95738492 - L1MA8 LINE L1 -4 6287 5370 23 33 0 0 chr6 93541278 93541308 -95738246 + AT_rich Low_complexity Low_complexity 1 30 0 1849 153 61 3 chr6 93542100 93542427 -95737127 - MER7A DNA MER2_type -1 345 2 238 369 36 0 chr6 93542558 93542642 -95736912 - L2 LINE L2 -14 3258 3172 237 299 195 0 chr6 93542834 93542921 -95736633 + MIR3 SINE MIR 58 161 -47 30 0 0 0 chr6 93544009 93544039 -95735515 + AT_rich Low_complexity Low_complexity 1 30 0 3159 168 12 31 chr6 93544325 93544967 -95734587 - L1MC1 LINE L1 -1 6332 5703 2458 148 0 66 chr6 93544969 93545455 -95734099 - L1MC1 LINE L1 -452 5881 5428 2947 6 0 0 chr6 93546722 93547040 -95732514 - AluYb8 SINE Alu 0 318 1 1240 313 80 41 chr6 93547063 93547847 -95731707 + L2 LINE L2 2076 2890 -424 295 155 14 14 chr6 93547852 93547923 -95731631 + GA-rich Low_complexity Low_complexity 1 71 0 340 309 142 0 chr6 93548139 93548301 -95731253 + MIR SINE MIR 48 232 -30 234 250 0 0 chr6 93548456 93548508 -95731046 - L2 LINE L2 -20 3252 3201 330 295 0 0 chr6 93549025 93549120 -95730434 - L1MC4 LINE L1 -1352 6690 6596 301 43 43 0 chr6 93549146 93549193 -95730361 + (GA)n Simple_repeat Simple_repeat 2 50 0 269 252 75 28 chr6 93549480 93549587 -95729967 + L2 LINE L2 3201 3312 -1 2421 160 66 2 chr6 93549874 93550330 -95729224 - MER31A LTR ERV1 0 485 1 369 232 77 83 chr6 93551345 93551513 -95728041 - L3 LINE CR1 -157 1420 1254 288 298 173 0 chr6 93551513 93551617 -95727937 - L2 LINE L2 0 3272 3151 544 318 87 4 chr6 93551639 93551891 -95727663 - L3 LINE CR1 -355 1222 950 2060 105 3 3 chr6 93553609 93553936 -95725618 - AluSp SINE Alu 0 327 1 22 0 0 0 chr6 93554234 93554256 -95725298 + AT_rich Low_complexity Low_complexity 1 22 0 226 324 101 36 chr6 93554276 93554415 -95725139 + MIR3 SINE MIR 2 149 -59 2612 78 22 3 chr6 93555356 93555713 -95723841 + THE1B LTR MaLR 1 364 0 22 70 0 0 chr6 93555732 93555775 -95723779 + AT_rich Low_complexity Low_complexity 1 43 0 231 292 0 0 chr6 93556618 93556683 -95722871 - MLT1K LTR MaLR 0 588 524 1336 259 76 64 chr6 93557243 93557981 -95721573 + L1MEd LINE L1 489 1235 -4884 253 293 88 27 chr6 93557996 93558143 -95721411 + HAL1 LINE L1 1405 1560 -947 25 51 0 0 chr6 93558301 93558340 -95721214 + AT_rich Low_complexity Low_complexity 1 39 0 22 80 0 0 chr6 93558656 93558706 -95720848 + AT_rich Low_complexity Low_complexity 1 50 0 590 279 148 28 chr6 93558931 93559820 -95719734 + L1MEd LINE L1 2399 3394 -2735 488 71 0 0 chr6 93559878 93559948 -95719606 + L1PB1 LINE L1 6076 6145 -6 200 204 0 23 chr6 93559982 93560026 -95719528 + GA-rich Low_complexity Low_complexity 3 45 0 1948 101 38 3 chr6 93561100 93561114 -95718440 - AluSq SINE Alu -16 297 285 375 23 0 0 chr6 93561114 93561158 -95718396 + (TG)n Simple_repeat Simple_repeat 1 44 0 1948 101 38 3 chr6 93561158 93561430 -95718124 - AluSq SINE Alu -28 285 1 219 258 16 0 chr6 93562409 93562471 -95717083 + CT-rich Low_complexity Low_complexity 1 63 0 806 301 51 30 chr6 93563574 93564004 -95715550 + MLT1J LTR MaLR 16 493 -18 2066 79 4 4 chr6 93564507 93564772 -95714782 - AluSc SINE Alu -10 299 35 883 324 96 18 chr6 93564893 93565472 -95714082 - L2 LINE L2 -179 3134 2508 210 270 34 56 chr6 93565791 93565880 -95713674 + MIR SINE MIR 102 188 -74 1324 234 45 60 chr6 93565921 93566391 -95713163 - MLT2C2 LTR ERVL -1 463 1 505 232 0 10 chr6 93566400 93566499 -95713055 - 5S rRNA rRNA -22 99 2 419 269 90 0 chr6 93566502 93566636 -95712918 - MER117 DNA MER1_type -51 146 1 205 169 34 0 chr6 93566763 93566822 -95712732 + CT-rich Low_complexity Low_complexity 2 62 0 24 32 0 0 chr6 93567061 93567092 -95712462 + AT_rich Low_complexity Low_complexity 1 31 0 315 320 160 33 chr6 93567092 93567242 -95712312 + L2 LINE L2 3104 3272 0 638 273 55 37 chr6 93567328 93567599 -95711955 - MLT1J LTR MaLR -229 282 7 4297 166 47 68 chr6 93568006 93569409 -95710145 + L1MB7 LINE L1 4817 6175 -9 234 0 0 0 chr6 93569902 93569928 -95709626 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1783 92 0 13 chr6 93570010 93570248 -95709306 + AluSc SINE Alu 75 309 0 523 270 39 28 chr6 93570319 93570497 -95709057 - MIR SINE MIR 0 262 83 754 279 135 21 chr6 93570759 93571136 -95708418 + MLT1J1 LTR MaLR 27 446 0 26 50 0 0 chr6 93571138 93571178 -95708376 + AT_rich Low_complexity Low_complexity 1 40 0 183 80 0 0 chr6 93571206 93571231 -95708323 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 1564 188 26 16 chr6 93571986 93572294 -95707260 - AluJo SINE Alu -1 311 1 210 244 0 0 chr6 93574768 93574809 -95704745 + polypyrimidine Low_complexity Low_complexity 4 44 0 615 308 120 39 chr6 93574948 93575364 -95704190 - L3 LINE CR1 -262 1315 866 181 247 194 0 chr6 93576339 93576432 -95703122 + L2 LINE L2 3193 3303 -10 23 78 0 0 chr6 93576980 93577031 -95702523 + AT_rich Low_complexity Low_complexity 1 51 0 562 238 106 6 chr6 93577057 93577217 -95702337 + MER110A LTR ERV1 291 466 -2 259 219 29 29 chr6 93577219 93577324 -95702230 + (TA)n Simple_repeat Simple_repeat 1 105 0 21 0 0 0 chr6 93577470 93577491 -95702063 + AT_rich Low_complexity Low_complexity 1 21 0 1869 184 0 0 chr6 93577948 93578252 -95701302 - AluJb SINE Alu -8 304 1 1629 107 19 8 chr6 93578260 93578521 -95701033 - L1MA5A LINE L1 -3 6294 6031 330 308 64 26 chr6 93579555 93579711 -95699843 + MLT1E LTR MaLR 1 162 -431 * 420 219 92 0 chr6 93579680 93579799 -95699755 + MLT1E1 LTR MaLR 104 233 -421 228 347 0 27 chr6 93579826 93579901 -95699653 + MLT1E1 LTR MaLR 190 262 -331 335 302 16 16 chr6 93580000 93580129 -95699425 + MER94 DNA DNA 4 132 -2 403 349 148 4 chr6 93580474 93580703 -95698851 + MIR SINE MIR 1 262 0 21 95 0 0 chr6 93582020 93582083 -95697471 + AT_rich Low_complexity Low_complexity 1 63 0 290 340 0 0 chr6 93582300 93582400 -95697154 - MER103 DNA DNA -46 120 21 435 305 15 8 chr6 93582438 93582569 -95696985 + L2 LINE L2 2765 2896 -418 288 362 58 7 chr6 93583003 93583141 -95696413 + MIR SINE MIR 34 178 -84 259 157 78 0 chr6 93583162 93583213 -95696341 - MER5A DNA MER1_type 0 189 135 13703 106 11 10 chr6 93583224 93584811 -95694743 - L1PA8A LINE L1 -577 5554 3967 2181 105 0 29 chr6 93584811 93585126 -95694428 - AluY SINE Alu -1 310 5 13703 106 11 10 chr6 93585126 93585785 -95693769 - L1PA8A LINE L1 -2164 3967 3311 3732 108 18 2 chr6 93585785 93586335 -95693219 + L1PA8A LINE L1 5568 6130 -1 3767 208 62 10 chr6 93586363 93586517 -95693037 + L1MA7 LINE L1 5134 5279 -1012 186 103 0 0 chr6 93586517 93586546 -95693008 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3767 208 62 10 chr6 93586546 93587356 -95692198 + L1MA7 LINE L1 5279 6140 -151 5977 121 6 10 chr6 93587395 93588483 -95691071 - L1PA14 LINE L1 -1 6160 4941 848 153 18 6 chr6 93588483 93588643 -95690911 + L1MA6 LINE L1 6132 6296 -4 680 241 7 0 chr6 93588657 93588794 -95690760 - MER5A DNA MER1_type -50 139 2 592 309 38 25 chr6 93588797 93589033 -95690521 - MLT1I LTR MaLR -18 391 153 274 274 179 9 chr6 93589370 93589476 -95690078 - MIR SINE MIR -28 234 111 291 328 127 15 chr6 93589907 93590041 -95689513 + MIR SINE MIR 1 149 -113 312 356 28 28 chr6 93590876 93591056 -95688498 + L2 LINE L2 2661 2840 -474 303 345 68 58 chr6 93591531 93592022 -95687532 - L2 LINE L2 -12 3260 2724 695 308 118 23 chr6 93592451 93592841 -95686713 - LTR16C LTR ERVL 0 491 65 376 266 53 35 chr6 93593002 93593115 -95686439 - L2 LINE L2 -592 2722 2608 228 336 91 35 chr6 93593141 93593284 -95686270 - L2 LINE L2 -11 3261 3111 409 160 13 0 chr6 93593291 93593366 -95686188 - MLT1A2 LTR MaLR 0 365 290 884 169 0 68 chr6 93593452 93593629 -95685925 + AluSg/x SINE Alu 131 295 -15 1080 245 18 22 chr6 93593790 93594068 -95685486 - MLT1A2 LTR MaLR -90 284 8 22 0 0 0 chr6 93594763 93594785 -95684769 + AT_rich Low_complexity Low_complexity 1 22 0 3025 149 6 8 chr6 93594795 93595326 -95684228 - L1MA5 LINE L1 -2 6298 5769 1358 156 14 9 chr6 93595326 93595544 -95684010 - AluSg/x SINE Alu -10 302 84 733 167 6 94 chr6 93595545 93595725 -95683829 - L1MA5 LINE L1 -520 5780 5617 * 5415 157 44 34 chr6 93595723 93597195 -95682359 + L1MA5 LINE L1 4109 5617 -683 2187 187 82 7 chr6 93597835 93598289 -95681265 - MER50 LTR ERV1 -12 722 235 2009 144 12 0 chr6 93598282 93598609 -95680945 - MER50 LTR ERV1 -403 331 1 * 3793 158 31 31 chr6 93599301 93599530 -95680024 - L1MC2 LINE L1 -8 6336 6108 1958 116 7 7 chr6 93599530 93599823 -95679731 - AluY SINE Alu -5 306 14 3793 158 31 31 chr6 93599823 93600366 -95679188 - L1MC2 LINE L1 -235 6109 5564 221 263 151 9 chr6 93600527 93600640 -95678914 - MIR SINE MIR -52 156 55 5083 46 17 0 chr6 93600810 93601441 -95678113 + L1PA7 LINE L1 5508 6149 -5 2120 142 34 0 chr6 93601727 93602079 -95677475 + THE1B LTR MaLR 1 364 0 2773 85 8 2 chr6 93602079 93602479 -95677075 + THE1B-int LTR MaLR 1 402 -1178 1348 106 0 0 chr6 93602462 93602660 -95676894 + THE1B-int LTR MaLR 1383 1580 0 * 2244 133 28 0 chr6 93602660 93603014 -95676540 + THE1B LTR MaLR 1 364 0 1808 216 37 18 chr6 93603491 93603949 -95675605 - MLT1C LTR MaLR 0 467 1 9086 40 6 0 chr6 93604001 93605906 -95673648 - L1PA5 LINE L1 0 6154 4242 2161 55 0 4 chr6 93606006 93606277 -95673277 - AluY SINE Alu -41 270 1 623 196 29 0 chr6 93606278 93606416 -95673138 + L1MA10 LINE L1 4606 4747 -1399 12666 142 95 19 chr6 93606417 93607325 -95672229 + L1PA16 LINE L1 101 938 -5911 348 24 0 0 chr6 93607325 93607366 -95672188 + (CA)n Simple_repeat Simple_repeat 1 41 0 12666 142 95 19 chr6 93607366 93608837 -95670717 + L1PA16 LINE L1 938 2663 -4186 5739 175 22 13 chr6 93608833 93611101 -95668453 + L1PA16 LINE L1 4582 6866 -3 * 4717 189 46 28 chr6 93611103 93611209 -95668345 + L1MA10 LINE L1 4744 4847 -1487 6881 67 51 3 chr6 93611209 93612281 -95667273 - L1PA8 LINE L1 -6 6166 5077 4717 189 46 28 chr6 93612281 93613724 -95665830 + L1MA10 LINE L1 4847 6333 -1 877 209 66 63 chr6 93614021 93614322 -95665232 + MLT1B LTR MaLR 89 390 0 250 261 15 31 chr6 93614646 93614711 -95664843 - MER91 DNA MER1_type 0 190 127 300 230 65 93 chr6 93615406 93615569 -95663985 + MIR SINE MIR 32 187 -75 25 0 0 0 chr6 93615614 93615639 -95663915 + AT_rich Low_complexity Low_complexity 1 25 0 271 231 98 106 chr6 93615839 93616029 -95663525 + MIR SINE MIR 16 206 -56 204 222 12 99 chr6 93616494 93616575 -95662979 + L3 LINE CR1 1503 1576 -1 770 273 79 16 chr6 93617721 93617974 -95661580 + MLT1H LTR MaLR 22 290 -259 239 115 58 19 chr6 93618453 93618505 -95661049 - MIR SINE MIR -107 155 102 494 281 92 22 chr6 93619201 93619386 -95660168 - MIR SINE MIR -64 198 1 314 367 104 19 chr6 93620400 93620670 -95658884 - L3 LINE CR1 -220 1357 1065 242 229 48 76 chr6 93621219 93621324 -95658230 + L2 LINE L2 2196 2297 -1017 410 333 50 43 chr6 93621740 93622019 -95657535 + L2 LINE L2 2804 3084 -188 247 307 31 71 chr6 93622032 93622159 -95657395 - L2 LINE L2 -10 3303 3182 608 164 0 17 chr6 93622250 93622366 -95657188 + MER3 DNA MER1_type 36 149 -60 261 253 0 11 chr6 93622371 93622466 -95657088 + L1MA4A LINE L1 6209 6302 -1 201 267 0 0 chr6 93622701 93622746 -95656808 + MIR SINE MIR 218 262 0 612 269 94 12 chr6 93624350 93624510 -95655044 - MIR3 SINE MIR -16 192 20 4332 167 24 9 chr6 93625377 93626256 -95653298 - L1MB4 LINE L1 -1 6179 5288 471 253 14 152 chr6 93626434 93626723 -95652831 - MIR SINE MIR -8 254 6 351 278 9 9 chr6 93626796 93626904 -95652650 - LTR67 LTR ERVL -18 539 432 324 218 0 51 chr6 93627412 93627490 -95652064 + L2 LINE L2 3197 3270 -2 535 334 132 10 chr6 93627579 93627974 -95651580 + L3 LINE CR1 901 1343 -234 675 124 54 174 chr6 93628292 93628533 -95651021 + L1MA8 LINE L1 6078 6289 -2 207 0 0 0 chr6 93629297 93629320 -95650234 + (TTG)n Simple_repeat Simple_repeat 2 24 0 188 450 29 29 chr6 93629887 93630027 -95649527 - L2 LINE L2 -6 3266 3127 1452 330 180 19 chr6 93630973 93631665 -95647889 + L3 LINE CR1 144 724 -853 1816 166 10 72 chr6 93631665 93632081 -95647473 - MLT1B LTR MaLR 0 390 1 1452 330 180 19 chr6 93632081 93632618 -95646936 + L3 LINE CR1 724 1570 -7 21 0 0 0 chr6 93633231 93633252 -95646302 + AT_rich Low_complexity Low_complexity 1 21 0 321 386 66 12 chr6 93634126 93634367 -95645187 - L2 LINE L2 -436 2878 2625 24 0 0 0 chr6 93636119 93636143 -95643411 + AT_rich Low_complexity Low_complexity 1 24 0 370 177 0 0 chr6 93636143 93636205 -95643349 - AluJ/FRAM SINE Alu -16 286 225 201 74 0 0 chr6 93636229 93636256 -95643298 + (TTG)n Simple_repeat Simple_repeat 1 27 0 764 174 0 0 chr6 93636256 93636371 -95643183 - FLAM_C SINE Alu -28 115 1 202 216 0 0 chr6 93637299 93637336 -95642218 + (CATA)n Simple_repeat Simple_repeat 3 39 0 224 315 28 9 chr6 93640095 93640203 -95639351 - L2 LINE L2 -1 3312 3203 809 249 190 21 chr6 93640549 93640971 -95638583 + L1MC4a LINE L1 5436 5928 -1880 275 272 39 48 chr6 93642610 93642713 -95636841 + L3 LINE CR1 1211 1312 -265 352 276 54 43 chr6 93642816 93642954 -95636600 + L1ME4a LINE L1 5351 5493 -2315 2501 146 36 2 chr6 93642954 93643373 -95636181 + Tigger2a DNA MER2_type 1 433 -1 352 276 54 43 chr6 93643373 93643419 -95636135 + L1ME4a LINE L1 5493 5537 -2271 822 358 140 21 chr6 93643465 93644398 -95635156 + L2 LINE L2 2184 3232 -81 200 194 0 0 chr6 93644440 93644476 -95635078 + (TG)n Simple_repeat Simple_repeat 1 36 0 277 136 0 0 chr6 93644478 93644522 -95635032 + L1ME4a LINE L1 5979 6022 -99 408 309 55 76 chr6 93644672 93644910 -95634644 + HAL1 LINE L1 826 1052 -1455 2086 128 0 42 chr6 93644910 93645222 -95634332 + AluSx SINE Alu 1 299 -13 408 309 55 76 chr6 93645222 93645416 -95634138 + HAL1 LINE L1 1052 1249 -1258 185 178 22 0 chr6 93645455 93645500 -95634054 + GA-rich Low_complexity Low_complexity 2 47 0 1886 133 87 35 chr6 93646349 93646695 -95632859 - THE1B LTR MaLR 0 364 1 246 250 0 16 chr6 93647089 93647153 -95632401 + L3 LINE CR1 1361 1423 -154 547 234 58 47 chr6 93650006 93650177 -95629377 + MER5B DNA MER1_type 3 175 -3 1489 195 98 18 chr6 93650389 93650778 -95628776 - L1MC4 LINE L1 -895 7147 6728 449 227 117 47 chr6 93650815 93651071 -95628483 - L1MC4a LINE L1 -1756 6052 5779 1184 223 94 29 chr6 93651071 93651468 -95628086 - MER39 LTR ERV1 0 707 90 4644 243 81 18 chr6 93651568 93652062 -95627492 - L1MC4a LINE L1 -337 5784 5323 2084 135 13 10 chr6 93652062 93652373 -95627181 - AluSx SINE Alu 0 312 1 4644 243 81 18 chr6 93652373 93652811 -95626743 - L1MC4a LINE L1 -798 5323 4914 1176 191 105 46 chr6 93652811 93653135 -95626419 + MER2 DNA MER2_type 2 344 0 4644 243 81 18 chr6 93653135 93654045 -95625509 - L1MC4a LINE L1 -1207 4914 3741 342 80 0 0 chr6 93654045 93654095 -95625459 + (CA)n Simple_repeat Simple_repeat 1 50 0 4644 243 81 18 chr6 93654095 93654522 -95625032 - L1MC4a LINE L1 -2380 3741 3342 187 324 0 29 chr6 93654666 93654734 -95624820 - L3b LINE CR1 -333 1250 1185 361 313 44 38 chr6 93654802 93654962 -95624592 - L2 LINE L2 -214 3058 2898 2063 138 44 41 chr6 93655074 93655437 -95624117 - THE1B LTR MaLR 0 364 1 263 299 102 18 chr6 93657058 93657184 -95622370 - MIR3 SINE MIR -28 180 50 259 194 0 16 chr6 93658070 93658132 -95621422 - L1ME4a LINE L1 -87 6034 5974 207 100 0 0 chr6 93658138 93658168 -95621386 + (TG)n Simple_repeat Simple_repeat 2 31 0 738 266 38 61 chr6 93659668 93660014 -95619540 - MER102b DNA MER1_type 0 341 4 27 62 0 0 chr6 93660240 93660288 -95619266 + AT_rich Low_complexity Low_complexity 1 48 0 266 274 27 0 chr6 93660353 93660426 -95619128 + L2 LINE L2 3190 3264 -8 * 572 248 29 81 chr6 93660424 93660670 -95618884 - L2 LINE L2 0 3313 3081 206 415 0 0 chr6 93660861 93660955 -95618599 - L2 LINE L2 -1 3271 3178 897 266 27 27 chr6 93661492 93661748 -95617806 - MIR SINE MIR 0 262 7 2024 152 0 3 chr6 93663979 93664281 -95615273 + AluSx SINE Alu 1 301 -11 318 326 76 11 chr6 93664456 93664640 -95614914 + L1ME3A LINE L1 5033 5228 -918 2050 137 3 0 chr6 93664644 93664937 -95614617 - AluSx SINE Alu -18 294 1 783 265 89 0 chr6 93664947 93665272 -95614282 + L1ME3A LINE L1 5270 5623 -539 1442 232 87 9 chr6 93665277 93665739 -95613815 + L1ME3A LINE L1 5661 6158 -12 979 186 6 0 chr6 93665893 93666060 -95613494 - AluJb SINE Alu -13 299 132 390 284 55 0 chr6 93666278 93666387 -95613167 - MIR SINE MIR -95 167 53 381 159 0 0 chr6 93666446 93666515 -95613039 - Tigger5 DNA MER2_type -56 2267 2199 2153 153 5 24 chr6 93667173 93667546 -95612008 - MER47A DNA MER2_type 0 366 1 1192 234 140 30 chr6 93667758 93668288 -95611266 - MLT1E2 LTR MaLR -15 611 3 836 221 37 88 chr6 93668506 93668905 -95610649 + MLT1A2 LTR MaLR 29 396 0 1892 140 18 0 chr6 93669294 93669606 -95609948 + AluSx SINE Alu 1 317 0 2401 49 3 0 chr6 93669797 93670084 -95609470 + AluY SINE Alu 18 305 -6 1081 294 81 11 chr6 93670207 93670578 -95608976 + MLT1G1 LTR MaLR 76 472 -123 653 257 150 32 chr6 93670609 93670889 -95608665 - L2 LINE L2 -189 3124 2812 1056 243 135 28 chr6 93670906 93671305 -95608249 + MLT1C LTR MaLR 22 463 -4 5181 291 74 13 chr6 93671309 93673111 -95606443 - L2 LINE L2 -510 2804 893 1468 66 10 10 chr6 93675553 93675751 -95603803 + L1PA6 LINE L1 5957 6154 0 2405 86 3 0 chr6 93675763 93676066 -95603488 + AluSp SINE Alu 1 304 -9 673 308 69 12 chr6 93676534 93676781 -95602773 + MIR SINE MIR 2 262 0 1312 128 0 41 chr6 93677181 93677377 -95602177 + AluSx SINE Alu 1 188 -124 249 33 0 0 chr6 93677386 93677416 -95602138 + (A)n Simple_repeat Simple_repeat 1 30 0 213 121 0 0 chr6 93677508 93677541 -95602013 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 2038 104 0 7 chr6 93677634 93677923 -95601631 + L1PA15 LINE L1 5866 6152 -13 1830 138 10 27 chr6 93679093 93679389 -95600165 + AluSx SINE Alu 1 291 -21 198 0 0 0 chr6 93679399 93679421 -95600133 + (TA)n Simple_repeat Simple_repeat 2 23 0 187 290 226 32 chr6 93679579 93679734 -95599820 - L2 LINE L2 -1 3312 3128 767 252 19 0 chr6 93680016 93680175 -95599379 + MER45A DNA AcHobo 5 166 -12 1941 149 0 21 chr6 93680195 93680562 -95598992 - AluSx SINE Alu 0 361 1 4760 122 34 53 chr6 93681183 93681773 -95597781 + L1PA16 LINE L1 4460 5060 -1106 2010 127 7 13 chr6 93681773 93682072 -95597482 + AluSq SINE Alu 1 297 -16 4760 122 34 53 chr6 93682072 93683211 -95596343 + L1PA16 LINE L1 5060 6157 -9 882 203 150 58 chr6 93683392 93683791 -95595763 - L1ME3 LINE L1 -1 6161 5726 824 153 0 0 chr6 93684759 93684877 -95594677 + FLAM_C SINE Alu 1 118 -15 25 0 0 0 chr6 93684880 93684905 -95594649 + AT_rich Low_complexity Low_complexity 1 25 0 531 140 75 0 chr6 93685349 93685442 -95594112 - MER58 DNA MER1_type -3 2417 2318 228 35 0 0 chr6 93685499 93685528 -95594026 + (A)n Simple_repeat Simple_repeat 1 29 0 573 239 22 0 chr6 93685566 93685704 -95593850 - MIR SINE MIR -43 219 79 539 148 0 0 chr6 93686767 93686855 -95592699 + AluJb SINE Alu 49 136 -176 262 239 14 0 chr6 93687068 93687139 -95592415 - MER116 DNA Mariner -7 73 2 1837 143 49 47 chr6 93687737 93688144 -95591410 + L1MA8 LINE L1 5884 6291 0 189 184 26 0 chr6 93688168 93688206 -95591348 - L2 LINE L2 -9 3304 3266 800 204 111 74 chr6 93689298 93689514 -95590040 - MER45C DNA AcHobo 0 953 730 707 254 88 35 chr6 93689607 93689890 -95589664 - MER45C DNA AcHobo -650 303 6 1065 183 131 62 chr6 93690612 93691016 -95588538 + MSTB1 LTR MaLR 1 432 0 241 353 59 22 chr6 93691023 93691159 -95588395 - MIR SINE MIR -110 152 12 358 302 35 0 chr6 93691363 93691479 -95588075 + MIR SINE MIR 103 222 -40 1358 176 121 8 chr6 93691695 93691951 -95587603 + AluJb SINE Alu 1 285 -27 2122 130 7 3 chr6 93692278 93692577 -95586977 - AluSx SINE Alu -12 300 1 337 259 108 30 chr6 93693360 93693526 -95586028 + LTR16A LTR ERVL 9 187 -263 2861 23 0 0 chr6 93693528 93693879 -95585675 - L1PA3 LINE L1 -1577 4569 4219 7709 24 0 0 chr6 93693879 93695477 -95584077 + L1PA3 LINE L1 4555 6153 -2 723 231 139 0 chr6 93695494 93695702 -95583852 + LTR16A LTR ERVL 205 441 -9 990 241 32 15 chr6 93696101 93696441 -95583113 + MER63B DNA MER1_type 1 346 -90 2061 150 8 21 chr6 93696649 93697029 -95582525 - THE1C LTR MaLR 0 375 1 754 234 145 93 chr6 93697036 93697553 -95582001 - MLT1H1 LTR MaLR 0 555 1 2434 84 0 0 chr6 93697970 93698266 -95581288 - AluSq SINE Alu -17 296 1 2212 113 6 22 chr6 93698781 93699099 -95580455 + AluSq SINE Alu 1 313 0 9834 175 2 11 chr6 93700045 93702814 -95576740 + L1PA13 LINE L1 3415 6161 -2 382 333 60 7 chr6 93703414 93703564 -95575990 + MIR SINE MIR 57 214 -48 30181 35 5 0 chr6 93704435 93709071 -95570483 - L1PA4 LINE L1 -1 6154 1497 18093 60 2 2 chr6 93709171 93711666 -95567888 - L1P LINE L1 -2474 3672 1177 601 293 35 35 chr6 93711666 93711953 -95567601 - MLT1I LTR MaLR -17 392 106 2016 122 0 43 chr6 93713169 93713473 -95566081 + AluSx SINE Alu 5 295 -17 201 74 0 0 chr6 93713507 93713534 -95566020 + (CA)n Simple_repeat Simple_repeat 2 28 0 350 115 16 0 chr6 93713578 93713639 -95565915 + (TG)n Simple_repeat Simple_repeat 1 62 0 303 333 0 0 chr6 93713640 93713730 -95565824 - L1MC4 LINE L1 -1339 6703 6614 * 316 238 95 0 chr6 93713656 93713740 -95565814 + L1MC4 LINE L1 6614 6705 -1337 23 0 0 0 chr6 93713824 93713847 -95565707 + AT_rich Low_complexity Low_complexity 1 23 0 1247 148 0 16 chr6 93714686 93714875 -95564679 + AluY SINE Alu 3 188 -123 1075 158 15 25 chr6 93714998 93715200 -95564354 - AluJo SINE Alu -99 213 14 1414 142 18 5 chr6 93715200 93715419 -95564135 - AluSg/x SINE Alu -7 303 82 926 155 28 0 chr6 93715829 93716010 -95563544 - MER53 DNA DNA 0 189 4 274 322 156 37 chr6 93717417 93717939 -95561615 - L2 LINE L2 -38 3275 2692 21 0 0 0 chr6 93718227 93718248 -95561306 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 93718276 93718303 -95561251 + AT_rich Low_complexity Low_complexity 1 27 0 232 290 84 53 chr6 93718340 93718471 -95561083 - MIR SINE MIR -109 153 19 321 228 69 20 chr6 93719321 93719422 -95560132 - L1ME LINE L1 -339 5782 5677 372 319 61 48 chr6 93721056 93721285 -95558269 + MIR SINE MIR 16 247 -15 247 281 49 24 chr6 93721300 93721382 -95558172 + L2 LINE L2 3141 3224 -48 248 370 29 29 chr6 93721843 93721981 -95557573 + L2 LINE L2 2922 3059 -213 339 286 88 61 chr6 93722362 93722704 -95556850 - MLT1J LTR MaLR -160 351 1 5784 119 27 23 chr6 93724453 93725630 -95553924 - L1MA4A LINE L1 0 6303 5122 993 190 26 17 chr6 93725622 93725854 -95553700 - L1 LINE L1 -907 5239 5006 * 180 0 0 0 chr6 93725875 93725895 -95553659 + (A)n Simple_repeat Simple_repeat 1 20 0 1068 139 60 9 chr6 93725897 93726112 -95553442 + L1 LINE L1 3684 3909 -2237 8818 179 37 32 chr6 93726120 93728361 -95551193 - L1 LINE L1 -1145 5001 2750 14768 34 1 0 chr6 93728461 93730997 -95548557 + L1PA4 LINE L1 3614 6150 -5 1266 297 86 36 chr6 93731422 93731461 -95548093 + L2 LINE L2 2259 2295 -1019 1899 160 35 6 chr6 93731461 93731799 -95547755 + MER7A DNA MER2_type 1 346 0 1266 297 86 36 chr6 93731799 93732365 -95547189 + L2 LINE L2 2295 2894 -420 1583 167 85 0 chr6 93732666 93732936 -95546618 + AluJb SINE Alu 1 293 -19 482 276 109 0 chr6 93733156 93733348 -95546206 - MLT1L LTR MaLR -4 611 399 357 378 105 42 chr6 93734068 93734478 -95545076 + L2 LINE L2 2837 3272 0 411 317 109 26 chr6 93736496 93736761 -95542793 - L2 LINE L2 -737 2577 2291 1751 182 7 0 chr6 93737094 93737380 -95542174 + AluJb SINE Alu 2 289 -23 1827 167 0 0 chr6 93737920 93738202 -95541352 + AluJb SINE Alu 1 282 -30 369 0 0 0 chr6 93738208 93738249 -95541305 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 432 37 0 0 chr6 93740450 93740504 -95539050 + (CA)n Simple_repeat Simple_repeat 2 55 0 1825 188 8 26 chr6 93742989 93743366 -95536188 - MER47B DNA MER2_type -48 370 1 805 163 30 7 chr6 93743381 93743516 -95536038 - AluJb SINE Alu -12 300 163 25 31 0 0 chr6 93743557 93743589 -95535965 + AT_rich Low_complexity Low_complexity 1 32 0 271 198 156 0 chr6 93744262 93744358 -95535196 - L1MD3 LINE L1 0 7995 7885 2359 77 0 10 chr6 93744375 93744672 -95534882 + AluY SINE Alu 1 294 -17 7630 172 15 30 chr6 93744720 93746432 -95533122 + L1PB1 LINE L1 3340 5025 -1121 35817 90 6 8 chr6 93746442 93747627 -95531927 + L1PA6 LINE L1 11 1198 -4956 2640 36 3 0 chr6 93747627 93747933 -95531621 + AluY SINE Alu 1 307 -4 35817 90 6 8 chr6 93747933 93752911 -95526643 + L1PA6 LINE L1 1198 6154 0 271 289 0 0 chr6 93752915 93752998 -95526556 + L1PB1 LINE L1 5017 5099 -1047 587 147 23 31 chr6 93753001 93753130 -95526424 + L1MA4A LINE L1 5916 6043 -260 3226 109 41 3 chr6 93753131 93753782 -95525772 + L1PB1 LINE L1 5116 5790 -361 212 192 27 27 chr6 93753789 93753862 -95525692 + (TA)n Simple_repeat Simple_repeat 2 74 0 1858 101 30 0 chr6 93753863 93754131 -95525423 + L1PB1 LINE L1 5777 6052 -99 2181 180 27 19 chr6 93754169 93754647 -95524907 + L1MA4 LINE L1 5813 6294 -6 25 0 0 0 chr6 93754666 93754691 -95524863 + AT_rich Low_complexity Low_complexity 1 25 0 283 272 136 20 chr6 93754831 93754978 -95524576 - MIR SINE MIR -2 260 97 490 187 84 0 chr6 93755139 93755246 -95524308 - MER103 DNA DNA -44 122 7 345 24 0 0 chr6 93755504 93755546 -95524008 + (TG)n Simple_repeat Simple_repeat 2 43 0 246 62 0 0 chr6 93755961 93755993 -95523561 + (ATG)n Simple_repeat Simple_repeat 1 32 0 2241 129 11 21 chr6 93756066 93756445 -95523109 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr6 93756800 93756823 -95522731 + AT_rich Low_complexity Low_complexity 1 23 0 2494 33 0 10 chr6 93758161 93758502 -95521052 + AluY SINE Alu 1 338 0 23 0 0 0 chr6 93758657 93758680 -95520874 + AT_rich Low_complexity Low_complexity 1 23 0 2380 85 0 3 chr6 93759110 93759417 -95520137 + AluY SINE Alu 3 308 -3 818 254 101 52 chr6 93759572 93759938 -95519616 - HAL1 LINE L1 -522 1985 1602 1759 127 52 24 chr6 93759942 93760233 -95519321 + AluSg SINE Alu 1 299 -11 663 209 81 7 chr6 93761129 93761277 -95518277 - MER5A DNA MER1_type -13 176 18 2122 81 7 39 chr6 93761593 93761901 -95517653 + AluSq SINE Alu 1 298 -15 640 259 119 13 chr6 93761943 93762179 -95517375 - LTR33 LTR ERVL -8 513 253 206 194 0 0 chr6 93762324 93762355 -95517199 - MER5A DNA MER1_type -13 176 146 2632 245 64 33 chr6 93762604 93763656 -95515898 + L1M4 LINE L1 2682 3765 -2381 1899 149 7 0 chr6 93764159 93764448 -95515106 - AluSx SINE Alu -21 291 1 529 177 0 21 chr6 93764853 93764949 -95514605 + AluSg/x SINE Alu 204 297 -13 183 250 71 48 chr6 93766992 93767076 -95512478 - L3 LINE CR1 -1091 486 401 467 248 23 23 chr6 93767451 93767584 -95511970 + LTR67 LTR ERVL 425 557 0 2095 147 0 0 chr6 93768513 93768819 -95510735 - AluSx SINE Alu -6 306 1 426 296 63 38 chr6 93769584 93769743 -95509811 - MIR3 SINE MIR -9 199 37 255 340 147 47 chr6 93769739 93769971 -95509583 - L2 LINE L2 -4 3268 3014 * 381 273 63 14 chr6 93770208 93770351 -95509203 - MIR SINE MIR -48 214 65 249 345 118 0 chr6 93770551 93770661 -95508893 + L2 LINE L2 3115 3237 -35 280 308 44 0 chr6 93770815 93770906 -95508648 - MIR SINE MIR -68 194 100 2322 78 3 0 chr6 93771265 93771560 -95507994 + AluSp SINE Alu 1 296 -17 2153 116 10 0 chr6 93771759 93772062 -95507492 + AluSq SINE Alu 1 306 -7 25 0 0 0 chr6 93772512 93772537 -95507017 + AT_rich Low_complexity Low_complexity 1 25 0 1926 132 3 20 chr6 93772703 93772894 -95506660 - AluSx SINE Alu 0 312 119 342 80 0 0 chr6 93772894 93772944 -95506610 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2198 91 3 7 chr6 93772944 93773231 -95506323 - AluSp SINE Alu -27 286 1 1926 132 3 20 chr6 93773231 93773367 -95506187 - AluSx SINE Alu -191 121 1 27 0 0 0 chr6 93773900 93773927 -95505627 + AT_rich Low_complexity Low_complexity 1 27 0 293 353 17 9 chr6 93774041 93774157 -95505397 - L2 LINE L2 0 3313 3197 461 334 147 52 chr6 93774375 93775009 -95504545 - L2 LINE L2 -402 2912 2219 287 310 161 62 chr6 93775093 93775528 -95504026 - L2 LINE L2 -1360 1954 1477 341 281 73 0 chr6 93775549 93775631 -95503923 + L2 LINE L2 3171 3258 -14 1752 138 7 31 chr6 93775755 93776070 -95503484 - AluJb SINE Alu 0 308 1 436 167 0 0 chr6 93776435 93776513 -95503041 - AluJ/FRAM SINE Alu -12 300 223 723 167 0 8 chr6 93776625 93776745 -95502809 + FLAM_C SINE Alu 1 119 -24 1101 277 36 39 chr6 93776780 93777220 -95502334 + L1ME1 LINE L1 5722 6160 -6 906 260 138 24 chr6 93777714 93778395 -95501159 + L1ME LINE L1 673 1474 -4787 929 226 87 0 chr6 93778395 93778603 -95500951 + MLT1F1 LTR MaLR 342 567 0 2075 140 0 6 chr6 93778645 93778959 -95500595 + AluSx SINE Alu 1 312 0 429 197 17 34 chr6 93779098 93779215 -95500339 + L1M4 LINE L1 4602 4716 -1430 1046 203 58 14 chr6 93779250 93779591 -95499963 + MSTD LTR MaLR 2 394 -2 23 78 0 0 chr6 93779844 93779895 -95499659 + AT_rich Low_complexity Low_complexity 1 51 0 2253 104 0 10 chr6 93780417 93780724 -95498830 + AluSg SINE Alu 1 304 -6 1300 178 121 0 chr6 93780797 93781061 -95498493 + AluJo SINE Alu 2 297 -5 3095 140 25 8 chr6 93781372 93781859 -95497695 + Tigger1 DNA MER2_type 21 515 -1903 1853 131 40 3 chr6 93781854 93782152 -95497402 + Tigger1 DNA MER2_type 2110 2418 0 * 2273 118 0 0 chr6 93782428 93782733 -95496821 - AluSx SINE Alu -7 305 1 360 298 110 91 chr6 93782969 93783714 -95495840 + HAL1 LINE L1 47 805 -1702 200 188 21 21 chr6 93783746 93783794 -95495760 + A-rich Low_complexity Low_complexity 5 52 0 949 282 51 7 chr6 93783828 93784122 -95495432 - L1ME3A LINE L1 -271 5899 5593 1928 251 108 20 chr6 93784194 93784271 -95495283 + HAL1 LINE L1 1107 1176 -1331 2134 136 0 0 chr6 93784271 93784565 -95494989 + AluSx SINE Alu 7 300 -12 1928 251 108 20 chr6 93784565 93785235 -95494319 + HAL1 LINE L1 1176 1920 -587 332 354 0 0 chr6 93785454 93785553 -95494001 + L2 LINE L2 3199 3297 -16 32 26 0 0 chr6 93786230 93786269 -95493285 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr6 93786559 93786582 -95492972 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr6 93787685 93787714 -95491840 + AT_rich Low_complexity Low_complexity 1 29 0 2244 106 0 0 chr6 93787982 93788285 -95491269 + AluSq SINE Alu 1 303 -10 2221 102 7 0 chr6 93788335 93788629 -95490925 + AluSg SINE Alu 1 296 -14 2222 103 3 3 chr6 93789198 93789499 -95490055 - AluSx SINE Alu -11 301 1 24 32 0 0 chr6 93789514 93789545 -95490009 + AT_rich Low_complexity Low_complexity 1 31 0 264 238 0 32 chr6 93790194 93790257 -95489297 + L2 LINE L2 3252 3312 -1 1613 195 0 17 chr6 93790811 93791109 -95488445 + AluJb SINE Alu 1 293 -19 303 346 78 23 chr6 93792725 93792891 -95486663 - MARNA DNA Mariner -17 569 414 2041 125 3 10 chr6 93792891 93793188 -95486366 - AluSg SINE Alu -15 295 1 303 346 78 23 chr6 93793188 93793330 -95486224 - MARNA DNA Mariner -172 414 244 411 309 142 0 chr6 93793521 93793683 -95485871 + MIR3 SINE MIR 18 202 -6 553 271 57 104 chr6 93794347 93794753 -95484801 + L1MC4 LINE L1 7505 7878 -164 228 35 0 0 chr6 93794753 93794782 -95484772 + (TG)n Simple_repeat Simple_repeat 2 30 0 553 271 57 104 chr6 93794782 93794940 -95484614 + L1MC4 LINE L1 7878 8042 0 370 326 36 57 chr6 93795162 93795509 -95484045 + L2 LINE L2 2688 3091 -181 266 310 0 0 chr6 93795788 93795859 -95483695 - HAL1 LINE L1 -2434 73 3 229 244 0 0 chr6 93796051 93796096 -95483458 + A-rich Low_complexity Low_complexity 1 45 0 668 188 8 8 chr6 93796285 93796418 -95483136 - FLAM_C SINE Alu 0 133 1 25 51 0 0 chr6 93796716 93796755 -95482799 + AT_rich Low_complexity Low_complexity 1 39 0 2098 128 0 10 chr6 93797239 93797543 -95482011 - AluSx SINE Alu -11 301 1 304 330 0 0 chr6 93797582 93797670 -95481884 + MIR SINE MIR 159 246 -16 183 162 0 0 chr6 93798641 93798678 -95480876 + (TA)n Simple_repeat Simple_repeat 2 38 0 399 227 117 32 chr6 93800164 93800318 -95479236 + MER104 DNA Tc2 11 177 -3 1975 137 7 0 chr6 93801003 93801302 -95478252 + AluSx SINE Alu 1 301 -11 203 325 0 0 chr6 93801356 93801433 -95478121 + A-rich Low_complexity Low_complexity 1 77 0 1239 270 75 30 chr6 93801475 93801904 -95477650 + L1MB7 LINE L1 7 454 -6088 7046 199 36 27 chr6 93801925 93803450 -95476104 + L1MB7 LINE L1 3972 5481 -1201 1531 200 33 12 chr6 93803450 93803713 -95475841 + L1MA9 LINE L1 5966 6239 -73 197 83 28 0 chr6 93803713 93803749 -95475805 + (TA)n Simple_repeat Simple_repeat 1 37 0 1531 200 33 12 chr6 93803749 93803820 -95475734 + L1MA9 LINE L1 6239 6307 -5 7046 199 36 27 chr6 93803820 93803995 -95475559 + L1MB7 LINE L1 5481 5653 -1029 1720 142 11 18 chr6 93803995 93804276 -95475278 + AluJo SINE Alu 19 297 -15 7046 199 36 27 chr6 93804276 93805249 -95474305 + L1MB7 LINE L1 5653 6663 -19 243 378 64 54 chr6 93805333 93805537 -95474017 + L2 LINE L2 3014 3219 -53 642 103 41 0 chr6 93805861 93805958 -95473596 - U6 snRNA snRNA -6 101 1 808 159 8 8 chr6 93806061 93806193 -95473361 + FLAM_C SINE Alu 1 132 -1 33 0 0 0 chr6 93806193 93806226 -95473328 + AT_rich Low_complexity Low_complexity 1 33 0 216 97 0 0 chr6 93806430 93806461 -95473093 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 28 0 0 0 chr6 93806570 93806598 -95472956 + AT_rich Low_complexity Low_complexity 1 28 0 1979 122 39 7 chr6 93807517 93807803 -95471751 - AluSx SINE Alu -17 295 1 2092 133 0 3 chr6 93808544 93808846 -95470708 - AluSx SINE Alu -11 301 1 268 152 0 22 chr6 93809063 93809109 -95470445 + FRAM/FAM SINE Alu 38 82 -84 207 220 0 0 chr6 93809364 93809414 -95470140 + GA-rich Low_complexity Low_complexity 2 51 0 1732 50 0 0 chr6 93809474 93809676 -95469878 - AluY SINE Alu -13 298 97 21 57 0 0 chr6 93810432 93810467 -95469087 + AT_rich Low_complexity Low_complexity 1 35 0 520 196 36 18 chr6 93810668 93810780 -95468774 + MER81 DNA DNA 1 114 0 2141 120 20 0 chr6 93811022 93811322 -95468232 + AluSx SINE Alu 1 306 -6 424 269 21 0 chr6 93812267 93812360 -95467194 - L2 LINE L2 -61 3211 3117 273 371 52 13 chr6 93812437 93812666 -95466888 - L2 LINE L2 -619 2695 2458 233 399 45 38 chr6 93812938 93813071 -95466483 + L2 LINE L2 3133 3266 -6 355 273 45 45 chr6 93813218 93813372 -95466182 - L2 LINE L2 -2 3311 3158 1106 73 33 0 chr6 93814634 93814785 -95464769 - L1PA11 LINE L1 0 6174 6019 30 27 0 0 chr6 93815039 93815076 -95464478 + AT_rich Low_complexity Low_complexity 1 37 0 38 81 0 0 chr6 93815121 93815208 -95464346 + AT_rich Low_complexity Low_complexity 1 87 0 2094 136 7 0 chr6 93815445 93815746 -95463808 + AluSx SINE Alu 1 303 -9 387 0 0 0 chr6 93816455 93816498 -95463056 + (CA)n Simple_repeat Simple_repeat 2 44 0 1928 157 10 0 chr6 93816562 93816867 -95462687 + AluSx SINE Alu 1 308 -4 2089 125 0 16 chr6 93817401 93817704 -95461850 + AluSx SINE Alu 2 299 -13 22 70 0 0 chr6 93817951 93817994 -95461560 + AT_rich Low_complexity Low_complexity 1 43 0 856 129 0 23 chr6 93818300 93818432 -95461122 + FLAM_C SINE Alu 2 130 -3 1704 172 35 0 chr6 93819194 93819484 -95460070 + AluJb SINE Alu 1 300 -12 252 250 112 40 chr6 93819780 93819932 -95459622 - MER117 DNA MER1_type -8 189 27 298 222 28 0 chr6 93820061 93820133 -95459421 - MER20 DNA MER1_type 0 219 146 344 197 30 0 chr6 93820248 93820314 -95459240 + MER69 DNA AcHobo 1 68 -2458 2067 101 7 40 chr6 93820535 93820858 -95458696 + AluSx SINE Alu 1 313 0 508 191 32 201 chr6 93821556 93821834 -95457720 + MIR SINE MIR 31 261 -1 2527 84 3 0 chr6 93822112 93822423 -95457131 - AluSp SINE Alu -1 312 1 42 20 0 0 chr6 93823340 93823389 -95456165 + AT_rich Low_complexity Low_complexity 1 49 0 2532 57 0 0 chr6 93824142 93824438 -95455116 - AluY SINE Alu -15 296 1 328 377 25 6 chr6 93824675 93824834 -95454720 + L2 LINE L2 248 409 -2905 229 279 44 73 chr6 93824998 93825134 -95454420 + MER117 DNA MER1_type 11 142 -55 501 197 77 8 chr6 93825517 93825634 -95453920 + MER94 DNA DNA 5 129 -5 27 49 0 0 chr6 93827361 93827402 -95452152 + AT_rich Low_complexity Low_complexity 1 41 0 755 154 0 46 chr6 93827580 93827710 -95451844 - FLAM_C SINE Alu -7 126 3 1712 183 0 17 chr6 93828251 93828388 -95451166 + AluJb SINE Alu 1 139 -173 2242 91 10 16 chr6 93828388 93828695 -95450859 + AluSp SINE Alu 1 305 -8 1712 183 0 17 chr6 93828695 93828846 -95450708 + AluJb SINE Alu 139 284 -28 1958 104 16 63 chr6 93829229 93829546 -95450008 - AluSx SINE Alu -10 302 1 572 119 0 0 chr6 93829572 93829656 -95449898 - AluS SINE Alu -228 84 1 25 0 0 0 chr6 93829798 93829823 -95449731 + AT_rich Low_complexity Low_complexity 1 25 0 2276 91 10 10 chr6 93829846 93830153 -95449401 - AluSp SINE Alu -6 307 1 26 30 0 0 chr6 93830336 93830369 -95449185 + AT_rich Low_complexity Low_complexity 1 33 0 2167 92 0 24 chr6 93830381 93830676 -95448878 - AluSg SINE Alu -22 288 1 2142 125 7 0 chr6 93830832 93831129 -95448425 + AluSq SINE Alu 2 300 -13 2289 105 0 6 chr6 93831377 93831691 -95447863 - AluSx SINE Alu 0 312 1 554 221 27 47 chr6 93831700 93831849 -95447705 + L2 LINE L2 3156 3301 -12 246 268 84 0 chr6 93832976 93833047 -95446507 - MIR SINE MIR -98 164 88 1009 107 0 12 chr6 93833056 93833225 -95446329 + (TAG)n Simple_repeat Simple_repeat 2 168 0 2116 113 3 3 chr6 93833479 93833770 -95445784 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr6 93833778 93833798 -95445756 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 23 33 0 0 chr6 93833931 93833961 -95445593 + AT_rich Low_complexity Low_complexity 1 30 0 2108 125 0 10 chr6 93833963 93834258 -95445296 - AluSx SINE Alu -20 292 1 1974 151 7 0 chr6 93834263 93834554 -95445000 - AluSx SINE Alu -19 293 1 2307 84 0 13 chr6 93834677 93834986 -95444568 + AluY SINE Alu 1 305 -6 932 210 150 33 chr6 93835038 93835372 -95444182 + MER93b LTR ERV1 1 373 0 827 94 86 0 chr6 93836462 93836590 -95442964 - MER85 DNA T2_type 0 139 1 358 312 53 29 chr6 93836971 93837141 -95442413 + L1M4 LINE L1 4884 5057 -1089 351 127 0 42 chr6 93837553 93837605 -95441949 - MADE1 DNA Mariner 0 80 30 2388 91 3 0 chr6 93837605 93837902 -95441652 + AluSp SINE Alu 1 298 -15 351 127 0 42 chr6 93837902 93837920 -95441634 - MADE1 DNA Mariner -50 30 13 303 119 153 0 chr6 93837989 93838048 -95441506 + MADE1 DNA Mariner 13 80 0 1974 114 29 0 chr6 93838182 93838478 -95441076 + AluSc SINE Alu 1 304 0 2536 44 7 0 chr6 93838480 93838773 -95440781 + AluY SINE Alu 4 298 -13 1160 216 26 37 chr6 93838847 93839116 -95440438 + Tigger7 DNA MER2_type 1 266 -2221 570 151 32 0 chr6 93839117 93839210 -95440344 + Tigger7 DNA MER2_type 2395 2490 -1 339 335 117 30 chr6 93839500 93839730 -95439824 + MIR SINE MIR 13 262 0 207 320 72 21 chr6 93839802 93839899 -95439655 + L2 LINE L2 1856 1957 -1357 255 346 81 21 chr6 93839987 93840221 -95439333 + L2 LINE L2 2060 2307 -1007 207 412 18 9 chr6 93840311 93840425 -95439129 - MIR SINE MIR -147 115 1 185 324 70 0 chr6 93840491 93840562 -95438992 + L3 LINE CR1 475 550 -1027 1666 172 17 10 chr6 93840794 93841084 -95438470 + AluJb SINE Alu 1 292 -20 1240 86 69 11 chr6 93841783 93841958 -95437596 - AluSx SINE Alu -109 203 19 1145 88 44 0 chr6 93841959 93842119 -95437435 - AluSg/x SINE Alu -9 301 135 185 256 47 0 chr6 93844019 93844062 -95435492 + L2 LINE L2 3222 3266 -6 240 252 0 99 chr6 93844237 93844348 -95435206 - MIR3 SINE MIR -94 114 15 2424 58 7 7 chr6 93844428 93844736 -95434818 + AluY SINE Alu 1 308 -3 447 222 92 33 chr6 93844886 93845039 -95434515 + MIR SINE MIR 92 253 -9 1563 140 13 96 chr6 93845107 93845421 -95434133 + AluJb SINE Alu 1 288 -24 216 259 0 37 chr6 93845444 93845498 -95434056 - L2 LINE L2 -33 3280 3229 357 231 90 15 chr6 93845895 93846029 -95433525 + L1ME4a LINE L1 5975 6118 -3 23 33 0 0 chr6 93846070 93846100 -95433454 + AT_rich Low_complexity Low_complexity 1 30 0 2047 76 29 11 chr6 93846131 93846429 -95433125 + AluY SINE Alu 1 303 0 602 298 56 10 chr6 93847318 93847490 -95432064 + MIR SINE MIR 22 206 -56 201 26 79 0 chr6 93847490 93847528 -95432026 + (TA)n Simple_repeat Simple_repeat 2 42 0 602 298 56 10 chr6 93847528 93847553 -95432001 + MIR SINE MIR 206 228 -34 2306 121 0 0 chr6 93848072 93848379 -95431175 + AluSq SINE Alu 1 307 -6 1181 119 173 4 chr6 93848504 93848730 -95430824 + MER21A LTR ERV1 1 264 -667 1790 137 48 54 chr6 93848736 93848920 -95430634 + MER21A LTR ERV1 377 560 -371 2376 90 3 0 chr6 93848920 93849231 -95430323 + AluSp SINE Alu 1 312 -1 1790 137 48 54 chr6 93849231 93849380 -95430174 + MER21A LTR ERV1 560 708 -223 949 112 53 18 chr6 93849380 93849549 -95430005 + MER41B LTR ERV1 1 175 -460 1262 157 85 58 chr6 93849561 93849787 -95429767 + AluSq SINE Alu 12 249 -64 192 77 0 0 chr6 93849787 93849813 -95429741 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 1262 157 85 58 chr6 93849813 93849880 -95429674 + AluSq SINE Alu 249 313 0 843 203 51 0 chr6 93849883 93850041 -95429513 + FRAM SINE Alu 1 166 0 226 214 29 0 chr6 93850058 93850128 -95429426 + L1M4 LINE L1 2310 2381 -3765 2342 99 3 0 chr6 93850129 93850431 -95429123 + AluSp SINE Alu 1 303 -10 36 0 0 0 chr6 93850442 93850478 -95429076 + AT_rich Low_complexity Low_complexity 1 36 0 2336 101 3 3 chr6 93850527 93850834 -95428720 + AluSc SINE Alu 1 307 -2 2617 235 21 16 chr6 93850920 93851126 -95428428 + L1M4 LINE L1 2438 2641 -3505 1667 201 38 104 chr6 93851126 93851683 -95427871 + MLT2B1 LTR ERVL 1 520 0 2617 235 21 16 chr6 93851683 93852281 -95427273 + L1M4 LINE L1 2641 3246 -2900 180 0 0 0 chr6 93852292 93852312 -95427242 + (A)n Simple_repeat Simple_repeat 1 20 0 1968 114 13 50 chr6 93852312 93852629 -95426925 + AluSq SINE Alu 1 305 -8 364 221 0 39 chr6 93852650 93852668 -95426886 + L1M4 LINE L1 3252 3269 -2877 1804 230 31 33 chr6 93852668 93853028 -95426526 - LTR40a LTR ERVL -2 517 157 204 67 0 0 chr6 93853028 93853058 -95426496 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 1804 230 31 33 chr6 93853058 93853215 -95426339 - LTR40a LTR ERVL -362 157 1 364 221 0 39 chr6 93853215 93853300 -95426254 + L1M4 LINE L1 3269 3351 -2795 721 197 11 49 chr6 93853341 93853524 -95426030 + L1ME2 LINE L1 5979 6154 -10 1769 129 21 96 chr6 93853536 93853868 -95425686 + AluYb8 SINE Alu 1 307 -11 405 278 107 16 chr6 93853916 93854103 -95425451 + L1MC4 LINE L1 7839 8042 0 288 217 14 72 chr6 93854113 93854136 -95425418 + L1MC5 LINE L1 7507 7530 -431 2002 163 9 3 chr6 93854136 93854479 -95425075 - MER7A DNA MER2_type 0 346 4 288 217 14 72 chr6 93854479 93854593 -95424961 + L1MC5 LINE L1 7530 7636 -325 2004 131 0 0 chr6 93854601 93854907 -95424647 - AluSx SINE Alu 0 308 3 893 181 130 102 chr6 93855059 93855204 -95424350 + L1MD2 LINE L1 5917 6056 -303 2130 124 7 3 chr6 93855204 93855503 -95424051 - AluSx SINE Alu -12 300 1 893 181 130 102 chr6 93855503 93855575 -95423979 + L1MD2 LINE L1 6056 6125 -234 228 35 0 0 chr6 93855575 93855604 -95423950 + (CA)n Simple_repeat Simple_repeat 2 30 0 893 181 130 102 chr6 93855604 93855671 -95423883 + L1MD2 LINE L1 6125 6189 -170 1756 163 10 14 chr6 93855671 93855966 -95423588 + AluJo SINE Alu 1 294 -18 893 181 130 102 chr6 93855966 93856107 -95423447 + L1MD2 LINE L1 6189 6356 -3 4625 101 16 84 chr6 93856377 93856959 -95422595 - LTR8 LTR ERV1 0 691 168 2127 121 7 3 chr6 93856959 93857264 -95422290 - AluSp SINE Alu -7 306 1 4625 101 16 84 chr6 93857264 93857422 -95422132 - LTR8 LTR ERV1 -523 168 1 496 274 81 15 chr6 93857783 93857980 -95421574 + LTR67 LTR ERVL 329 538 -19 475 183 0 0 chr6 93858245 93858327 -95421227 - AluSp/q SINE Alu -17 296 215 5473 75 15 1 chr6 93859013 93859695 -95419859 + LTR8 LTR ERV1 1 691 0 352 157 37 93 chr6 93859952 93860060 -95419494 - MIR SINE MIR -87 175 74 216 97 0 0 chr6 93860305 93860336 -95419218 + (TG)n Simple_repeat Simple_repeat 1 31 0 27 49 0 0 chr6 93860432 93860473 -95419081 + AT_rich Low_complexity Low_complexity 1 41 0 1898 139 0 4 chr6 93860745 93861025 -95418529 + AluSq SINE Alu 3 281 -32 764 92 8 0 chr6 93861028 93861147 -95418407 + (GGAA)n Simple_repeat Simple_repeat 3 122 0 484 268 89 18 chr6 93861166 93861334 -95418220 - MLT1K LTR MaLR -42 546 367 2199 120 0 0 chr6 93861853 93862145 -95417409 - AluSx SINE Alu -20 292 1 1435 254 83 3 chr6 93862217 93862591 -95416963 + MER90 LTR ERV1 165 568 -7 373 329 108 57 chr6 93862639 93863083 -95416471 + L2 LINE L2 2587 3061 -211 322 304 59 0 chr6 93863328 93863430 -95416124 + MER20 DNA MER1_type 108 215 -4 257 247 27 0 chr6 93863460 93863533 -95416021 + (TGAA)n Simple_repeat Simple_repeat 2 76 0 2128 141 0 0 chr6 93863706 93864005 -95415549 + AluSx SINE Alu 1 299 -13 1736 102 165 62 chr6 93865137 93865666 -95413888 + MER4A LTR ERV1 1 651 -13 1306 122 0 0 chr6 93865987 93866167 -95413387 - AluSq SINE Alu -2 311 132 690 232 23 11 chr6 93866347 93866524 -95413030 + LTR37A LTR ERV1 78 256 -170 1022 174 0 12 chr6 93866614 93866955 -95412599 + AluSg/x SINE Alu 136 312 0 741 168 7 51 chr6 93867258 93867395 -95412159 - AluSg/x SINE Alu -16 296 166 1674 132 33 37 chr6 93867407 93867679 -95411875 - AluSx SINE Alu -39 273 3 579 207 48 27 chr6 93868889 93869077 -95410477 + LTR37A LTR ERV1 225 416 -10 2213 119 0 0 chr6 93869077 93869379 -95410175 - AluSg SINE Alu -8 302 1 2149 134 0 0 chr6 93869475 93869781 -95409773 - AluSx SINE Alu -4 308 3 266 0 0 29 chr6 93869783 93869818 -95409736 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2169 112 0 0 chr6 93869818 93870103 -95409451 - AluSx SINE Alu -27 285 1 1689 130 0 0 chr6 93870364 93870602 -95408952 - AluSg/x SINE Alu -2 310 73 2184 122 10 6 chr6 93870616 93870927 -95408627 - AluSx SINE Alu 0 312 1 273 264 0 0 chr6 93870956 93871047 -95408507 + (TA)n Simple_repeat Simple_repeat 1 91 0 21 0 0 0 chr6 93872321 93872342 -95407212 + AT_rich Low_complexity Low_complexity 1 21 0 2224 113 3 0 chr6 93872779 93873079 -95406475 + AluSg SINE Alu 1 301 -9 1624 125 17 8 chr6 93873319 93873559 -95405995 - AluSq SINE Alu -71 242 1 3496 151 120 19 chr6 93876833 93877475 -95402079 - MER39 LTR ERV1 0 707 1 2389 100 0 3 chr6 93877728 93878038 -95401516 + AluSg SINE Alu 1 309 -1 192 291 77 55 chr6 93878232 93878414 -95401140 + L2 LINE L2 3041 3226 -87 614 227 9 0 chr6 93878707 93878817 -95400737 + MER81 DNA DNA 4 114 0 375 250 0 0 chr6 93878934 93879006 -95400548 + L2 LINE L2 3200 3271 -1 497 156 0 73 chr6 93879041 93879137 -95400417 + AluJ/FRAM SINE Alu 217 305 -7 360 350 182 5 chr6 93879357 93879560 -95399994 + L2 LINE L2 3016 3254 -18 1681 169 6 16 chr6 93879673 93879986 -95399568 + AluJb SINE Alu 1 310 -2 398 261 63 14 chr6 93880045 93880187 -95399367 - MIR SINE MIR -49 213 65 303 28 0 0 chr6 93880647 93880683 -95398871 + (TG)n Simple_repeat Simple_repeat 2 37 0 2106 151 32 24 chr6 93880979 93881349 -95398205 - THE1C LTR MaLR 0 375 3 34026 109 14 29 chr6 93881947 93882600 -95396954 - L1PA7 LINE L1 0 6154 5493 2337 84 3 7 chr6 93882600 93882899 -95396655 - AluY SINE Alu -13 298 1 34026 109 14 29 chr6 93882899 93888485 -95391069 - L1PA7 LINE L1 -661 5493 10 444 261 133 18 chr6 93890101 93890266 -95389288 - MIR SINE MIR -6 256 73 213 313 25 0 chr6 93890305 93890385 -95389169 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 982 251 59 47 chr6 93890526 93890757 -95388797 + MER2 DNA MER2_type 2 229 -116 2228 108 0 10 chr6 93890757 93891062 -95388492 - AluSg SINE Alu -8 302 1 189 0 0 0 chr6 93891065 93891086 -95388468 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2074 122 7 0 chr6 93891091 93891379 -95388175 - AluSx SINE Alu -22 290 1 982 251 59 47 chr6 93891379 93891476 -95388078 + MER2 DNA MER2_type 233 344 -1 6384 80 2 6 chr6 93892142 93892958 -95386596 + L1PA8 LINE L1 5360 6172 0 2283 112 0 3 chr6 93893260 93893565 -95385989 - AluSq SINE Alu -9 304 1 2261 80 0 3 chr6 93894196 93894483 -95385071 + AluSg SINE Alu 11 296 -14 2836 77 14 0 chr6 93894490 93894840 -95384714 - THE1A LTR MaLR 0 355 1 185 224 207 0 chr6 93894844 93894902 -95384652 - MIR SINE MIR -18 244 175 1018 259 99 30 chr6 93894972 93894998 -95384556 + MLT1H1 LTR MaLR 1 24 -566 2249 90 0 23 chr6 93894998 93895298 -95384256 + AluY SINE Alu 1 293 -18 1018 259 99 30 chr6 93895298 93895711 -95383843 + MLT1H1 LTR MaLR 24 531 -59 1816 171 0 0 chr6 93895711 93895998 -95383556 - AluSx SINE Alu -25 287 1 1018 259 99 30 chr6 93895998 93896063 -95383491 + MLT1H1 LTR MaLR 531 590 0 24 0 0 0 chr6 93896147 93896171 -95383383 + AT_rich Low_complexity Low_complexity 1 24 0 247 255 0 0 chr6 93896328 93896379 -95383175 - L2 LINE L2 -2 3270 3220 2200 108 0 3 chr6 93896560 93896848 -95382706 + AluSq SINE Alu 1 287 -26 213 39 0 0 chr6 93896858 93896884 -95382670 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1993 113 0 28 chr6 93897242 93897533 -95382021 + AluSg SINE Alu 1 283 -27 180 0 0 0 chr6 93897547 93897567 -95381987 + (CAT)n Simple_repeat Simple_repeat 2 21 0 756 313 63 61 chr6 93898022 93898466 -95381088 + MLT1K LTR MaLR 140 584 -4 445 352 52 20 chr6 93898567 93898721 -95380833 + MIR SINE MIR 2 169 -93 2264 110 0 0 chr6 93898721 93899021 -95380533 - AluSq SINE Alu -13 300 1 445 352 52 20 chr6 93899021 93899116 -95380438 + MIR SINE MIR 169 259 -3 1089 158 48 113 chr6 93899572 93899612 -95379942 + THE1C LTR MaLR 1 42 -333 2083 138 0 3 chr6 93899612 93899924 -95379630 - AluY SINE Alu 0 311 1 1089 158 48 113 chr6 93899924 93900218 -95379336 + THE1C LTR MaLR 42 313 -62 1960 118 0 28 chr6 93900728 93901038 -95378516 + AluSg SINE Alu 1 302 0 756 313 63 61 chr6 93901508 93901952 -95377602 + MLT1K LTR MaLR 140 584 -4 445 352 52 20 chr6 93902053 93902207 -95377347 + MIR SINE MIR 2 169 -93 2255 110 0 0 chr6 93902207 93902506 -95377048 - AluSq SINE Alu -14 299 1 445 352 52 20 chr6 93902506 93902601 -95376953 + MIR SINE MIR 169 259 -3 1925 137 39 72 chr6 93903057 93903091 -95376463 + THE1C LTR MaLR 1 35 -340 2579 56 0 3 chr6 93903091 93903396 -95376158 - AluY SINE Alu -7 304 1 1925 137 39 72 chr6 93903396 93903747 -95375807 + THE1C LTR MaLR 35 373 -2 1302 213 12 4 chr6 93904008 93904261 -95375293 - MLT1A1 LTR MaLR -110 255 1 2497 122 25 5 chr6 93904325 93904693 -95374861 - THE1C LTR MaLR 0 375 1 334 161 0 0 chr6 93904802 93904858 -95374696 - MSTA LTR MaLR -372 56 1 2319 103 3 0 chr6 93904876 93905176 -95374378 - AluSq SINE Alu -12 301 1 5038 55 2 2 chr6 93905233 93905820 -95373734 - LTR14C LTR ERVK 0 587 1 1431 172 19 69 chr6 93905910 93906412 -95373142 - AluJb SINE Alu 0 312 1 2217 188 70 2 chr6 93906494 93906893 -95372661 - MSTB LTR MaLR 0 426 1 381 222 0 0 chr6 93906893 93906992 -95372562 + (TAGA)n Simple_repeat Simple_repeat 3 101 0 563 242 42 0 chr6 93907347 93907467 -95372087 - MIR SINE MIR -107 155 31 465 232 221 0 chr6 93907667 93907848 -95371706 - L2 LINE L2 -12 3301 3081 11329 44 5 0 chr6 93908434 93910603 -95368951 + L1PA3 LINE L1 3976 6151 -4 2638 89 5 3 chr6 93910618 93910999 -95368555 + L1PA5 LINE L1 5770 6151 -3 294 206 33 11 chr6 93911587 93911679 -95367875 + (TA)n Simple_repeat Simple_repeat 1 94 0 1138 153 100 4 chr6 93911679 93911920 -95367634 - L1MA6 LINE L1 -6 6294 6031 1099 201 56 8 chr6 93911922 93912156 -95367398 - MSTB1 LTR MaLR 0 432 188 6858 124 27 8 chr6 93912164 93912327 -95367227 - L1MA3 LINE L1 0 6305 6147 198 0 0 0 chr6 93912327 93912349 -95367205 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2101 121 7 0 chr6 93912349 93912631 -95366923 - AluSx SINE Alu -28 284 1 6858 124 27 8 chr6 93912631 93914002 -95365552 - L1MA3 LINE L1 -157 6148 4732 1059 97 0 0 chr6 93914024 93914296 -95365258 + (TA)n Simple_repeat Simple_repeat 1 272 0 308 219 0 0 chr6 93914740 93914804 -95364750 - L1MA3 LINE L1 -2754 3392 3329 * 12600 154 37 6 chr6 93914801 93917668 -95361886 - L1 LINE L1 -1420 6145 3093 2110 123 0 0 chr6 93917668 93917961 -95361593 - AluSx SINE Alu -7 305 13 12600 154 37 6 chr6 93917961 93919501 -95360053 - L1 LINE L1 -4472 3093 1602 1424 140 25 0 chr6 93919567 93919803 -95359751 - L1M2 LINE L1 -638 5653 5412 * 15774 190 62 13 chr6 93919802 93923801 -95355753 + L1PB1 LINE L1 1 3802 -3065 1985 146 0 0 chr6 93923801 93924113 -95355441 - AluSx SINE Alu 0 312 1 15774 190 62 13 chr6 93924113 93924969 -95354585 + L1PB1 LINE L1 3802 4615 -2252 189 0 0 0 chr6 93924969 93924990 -95354564 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 15774 190 62 13 chr6 93924990 93926600 -95352954 + L1PB1 LINE L1 4615 6867 0 443 138 25 0 chr6 93926650 93926730 -95352824 - L1M2 LINE L1 -879 5424 5343 234 191 0 0 chr6 93926730 93926777 -95352777 + (TA)n Simple_repeat Simple_repeat 1 47 0 270 338 14 56 chr6 93926777 93926919 -95352635 - MER5A DNA MER1_type -53 136 1 579 271 107 11 chr6 93927010 93927187 -95352367 - MIR3 SINE MIR 0 208 15 187 350 12 0 chr6 93928056 93928136 -95351418 + MIR SINE MIR 118 198 -64 189 242 81 16 chr6 93928499 93928561 -95350993 + MER5A DNA MER1_type 121 186 -3 389 201 152 67 chr6 93928581 93928745 -95350809 - MER5B DNA MER1_type 0 178 1 195 81 27 27 chr6 93928894 93928931 -95350623 - L2 LINE L2 -4 3309 3273 2110 149 0 0 chr6 93929005 93929307 -95350247 + AluSx SINE Alu 1 302 -10 532 250 92 26 chr6 93930022 93930250 -95349304 - HAL1 LINE L1 -7 2500 2258 274 247 88 82 chr6 93930329 93930511 -95349043 - L2 LINE L2 -50 3263 3081 2415 303 116 72 chr6 93930512 93931586 -95347968 - HAL1 LINE L1 -290 2217 1193 1960 125 28 3 chr6 93931586 93931875 -95347679 + AluSx SINE Alu 1 296 -16 2415 303 116 72 chr6 93931875 93932090 -95347464 - HAL1 LINE L1 -1314 1193 989 1858 100 0 120 chr6 93932090 93932431 -95347123 - AluSx SINE Alu 0 302 3 2415 303 116 72 chr6 93932431 93932812 -95346742 - HAL1 LINE L1 -1518 989 627 802 166 53 30 chr6 93932812 93932981 -95346573 - MER69A DNA AcHobo -3 174 2 2415 303 116 72 chr6 93932981 93933430 -95346124 - HAL1 LINE L1 -1880 627 1 5298 137 37 6 chr6 93933590 93934546 -95345008 - L1PB3 LINE L1 -1 6153 5175 463 243 43 0 chr6 93934873 93935013 -95344541 + MER103 DNA DNA 8 153 -13 1801 200 50 3 chr6 93936273 93936632 -95342922 + MLT1C LTR MaLR 1 376 -91 4233 121 68 5 chr6 93936632 93937299 -95342255 + MER50 LTR ERV1 1 709 -25 547 175 0 10 chr6 93937301 93937398 -95342156 + MLT1C LTR MaLR 372 467 0 571 260 45 18 chr6 93937398 93937621 -95341933 - L1MC4a LINE L1 -1951 5857 5629 322 135 29 96 chr6 93939286 93939333 -95340221 - L1MB3 LINE L1 0 6183 6145 2215 103 0 13 chr6 93939333 93939644 -95339910 - AluSc SINE Alu -2 307 1 322 135 29 96 chr6 93939644 93939700 -95339854 - L1MB3 LINE L1 -38 6145 6087 3641 140 5 2 chr6 93939710 93940290 -95339264 - L1MA4 LINE L1 -279 6021 5440 409 286 146 18 chr6 93940985 93941156 -95338398 - MIR SINE MIR -2 260 68 2143 123 7 0 chr6 93941763 93942064 -95337490 - AluSq SINE Alu -6 307 5 789 300 24 36 chr6 93942302 93942552 -95337002 - MIR SINE MIR -8 254 8 515 311 7 0 chr6 93943179 93943314 -95336240 + MIR3 SINE MIR 34 169 -39 231 167 157 29 chr6 93943450 93943552 -95336002 - Charlie7 DNA MER1_type -80 2532 2418 * 1402 225 59 8 chr6 93943547 93943921 -95335633 - Charlie7 DNA MER1_type -1892 720 328 243 269 0 0 chr6 93943930 93943982 -95335572 - LTR16C LTR ERVL -10 481 430 585 136 0 18 chr6 93944011 93944121 -95335433 - L1PA13 LINE L1 -1 6162 6055 477 110 183 0 chr6 93944123 93944205 -95335349 + L1P4 LINE L1 5695 5791 -375 362 330 82 22 chr6 93944217 93944487 -95335067 - LTR16C LTR ERVL -123 368 83 377 229 41 0 chr6 93944728 93944850 -95334704 - Charlie7 DNA MER1_type -2465 147 21 2137 133 0 0 chr6 93945797 93946097 -95333457 - AluSx SINE Alu -12 300 1 2228 112 6 10 chr6 93946259 93946572 -95332982 - AluSx SINE Alu 0 312 1 1716 224 8 19 chr6 93947214 93947589 -95331965 - MER88 LTR ERVL -15 449 79 782 109 42 0 chr6 93947790 93947909 -95331645 - MSTA LTR MaLR -304 124 1 8695 149 7 37 chr6 93947909 93949431 -95330123 - MSTA-int LTR MaLR 0 1580 104 809 141 141 0 chr6 93949431 93949587 -95329967 - MSTA LTR MaLR -250 178 1 1396 198 9 60 chr6 93950342 93950660 -95328894 - AluJo SINE Alu -10 302 1 1259 126 70 0 chr6 93950700 93950914 -95328640 + MER30 DNA MER1_type 2 230 0 3096 158 12 12 chr6 93951036 93951620 -95327934 - L1MB8 LINE L1 -2 6987 6404 5804 226 44 41 chr6 93951622 93953175 -95326379 - L1MB8 LINE L1 -2275 4682 3135 2066 132 7 7 chr6 93953175 93953471 -95326083 - AluSx SINE Alu -16 296 1 2200 117 0 0 chr6 93953473 93953773 -95325781 - AluSg SINE Alu 0 310 11 5804 226 44 41 chr6 93953773 93954300 -95325254 - L1MB8 LINE L1 -3822 3135 2611 1707 161 32 47 chr6 93954351 93954692 -95324862 + MER7A DNA MER2_type 1 334 -12 39 50 0 0 chr6 93954948 93955008 -95324546 + AT_rich Low_complexity Low_complexity 1 60 0 626 184 81 0 chr6 93955008 93955144 -95324410 - L1MB8 LINE L1 -5863 996 850 1521 252 34 10 chr6 93955153 93955640 -95323914 - L1MB8 LINE L1 -6050 809 251 2171 117 0 0 chr6 93956129 93956428 -95323126 - AluSq SINE Alu -14 299 1 363 335 88 21 chr6 93956626 93956865 -95322689 - L1M4 LINE L1 -2214 3932 3678 1731 152 62 4 chr6 93957898 93958174 -95321380 + AluJb SINE Alu 1 292 -20 330 331 129 0 chr6 93958231 93958394 -95321160 - MIR SINE MIR -77 185 2 2091 129 3 7 chr6 93958413 93958716 -95320838 - AluSx SINE Alu -10 302 1 409 252 196 30 chr6 93958781 93959210 -95320344 - L1M4 LINE L1 -3261 2885 2386 304 239 149 40 chr6 93959226 93959427 -95320127 - L1M4 LINE L1 -3796 2350 2128 25 0 0 0 chr6 93959484 93959509 -95320045 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr6 93960396 93960419 -95319135 + AT_rich Low_complexity Low_complexity 1 23 0 326 280 147 24 chr6 93960547 93960743 -95318811 + L1ME1 LINE L1 5097 5322 -824 1126 159 0 6 chr6 93960743 93960919 -95318635 + FAM SINE Alu 1 175 0 326 280 147 24 chr6 93960919 93960933 -95318621 + L1ME1 LINE L1 5322 5333 -813 879 252 127 29 chr6 93960971 93961356 -95318198 + L1ME1 LINE L1 5318 5740 -2068 1049 205 33 63 chr6 93961685 93962051 -95317503 + L1ME1 LINE L1 5767 6121 -45 25 0 0 0 chr6 93962159 93962184 -95317370 + AT_rich Low_complexity Low_complexity 1 25 0 331 369 0 25 chr6 93962243 93962365 -95317189 + L2 LINE L2 3152 3270 -2 258 264 90 7 chr6 93963916 93964060 -95315494 - MER20B DNA MER1_type -113 670 515 21 0 0 0 chr6 93964115 93964136 -95315418 + AT_rich Low_complexity Low_complexity 1 21 0 680 218 177 4 chr6 93964150 93964393 -95315161 - MER20B DNA MER1_type -274 509 225 412 313 110 62 chr6 93964718 93964908 -95314646 + L2 LINE L2 2575 2783 -531 2352 110 0 0 chr6 93964908 93965217 -95314337 - AluSq SINE Alu -4 309 1 412 313 110 62 chr6 93965217 93965298 -95314256 + L2 LINE L2 2783 2859 -455 1108 204 94 19 chr6 93965408 93965727 -95313827 + MER2 DNA MER2_type 2 344 0 387 339 24 16 chr6 93965830 93965957 -95313597 + L2 LINE L2 3142 3269 -3 1231 153 5 0 chr6 93966012 93966221 -95313333 + MER2 DNA MER2_type 1 210 -135 268 325 92 24 chr6 93966460 93966613 -95312941 + MIR SINE MIR 1 154 -54 1886 162 0 3 chr6 93966781 93967078 -95312476 - AluSx SINE Alu -16 296 1 618 181 0 42 chr6 93967078 93967222 -95312332 + MER2 DNA MER2_type 202 339 -6 373 244 100 80 chr6 93968175 93968425 -95311129 + L1MC4a LINE L1 5737 5993 -128 376 172 154 53 chr6 93968500 93968669 -95310885 - MER53 DNA DNA -3 186 1 425 326 119 10 chr6 93969090 93969283 -95310271 + MIR SINE MIR 35 248 -14 212 188 21 21 chr6 93969314 93969362 -95310192 + (CAA)n Simple_repeat Simple_repeat 3 50 0 406 179 19 38 chr6 93969540 93969646 -95309908 - L1ME1 LINE L1 -18 6148 6045 329 257 196 75 chr6 93971909 93972123 -95307431 - L1M2 LINE L1 -5838 1011 772 21 0 0 0 chr6 93972269 93972290 -95307264 + GC_rich Low_complexity Low_complexity 1 21 0 222 200 0 0 chr6 93972339 93972384 -95307170 + CT-rich Low_complexity Low_complexity 2 46 0 369 244 97 111 chr6 93972408 93972769 -95306785 + L1M2 LINE L1 895 1250 -5599 29 28 0 0 chr6 93974681 93974717 -95304837 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr6 93977575 93977613 -95301941 + AT_rich Low_complexity Low_complexity 1 38 0 275 312 38 97 chr6 93977638 93977824 -95301730 - MIR3 SINE MIR -21 187 13 2359 113 0 0 chr6 93978910 93979219 -95300335 - AluSx SINE Alu -3 309 1 231 336 9 0 chr6 93979738 93979854 -95299700 - L1ME LINE L1 -396 5725 5609 318 26 0 0 chr6 93980116 93980155 -95299399 + (TG)n Simple_repeat Simple_repeat 1 39 0 333 277 43 0 chr6 93980529 93980623 -95298931 - MIR SINE MIR -113 149 52 185 396 92 17 chr6 93980786 93981026 -95298528 - L2 LINE L2 -191 3081 2824 652 223 57 19 chr6 93981145 93981481 -95298073 - LTR52 LTR ERVL -19 402 1 6750 184 26 21 chr6 93981481 93982669 -95296885 - LTR52-int LTR ERVL 0 3556 2376 2229 79 122 29 chr6 93982669 93982891 -95296663 - THE1C LTR MaLR 0 375 175 1507 134 0 0 chr6 93982891 93983092 -95296462 + AluSg/x SINE Alu 85 285 -27 189 0 0 0 chr6 93983092 93983113 -95296441 + (CCAA)n Simple_repeat Simple_repeat 2 22 0 2229 79 122 29 chr6 93983113 93983232 -95296322 - THE1C LTR MaLR -199 176 1 9935 100 48 40 chr6 93983232 93984800 -95294754 - THE1C-int LTR MaLR 0 1580 1 2794 85 3 11 chr6 93984800 93985178 -95294376 - THE1C LTR MaLR 0 375 1 6750 184 26 21 chr6 93985178 93985306 -95294248 - LTR52-int LTR ERVL -1179 2377 2231 2887 208 43 8 chr6 93985340 93985995 -95293559 - LTR52-int LTR ERVL -1419 2137 1460 1240 157 4 41 chr6 93985993 93986102 -95293452 - LTR52-int LTR ERVL -2034 1522 1410 * 2068 78 0 0 chr6 93986102 93986358 -95293196 + AluY SINE Alu 38 293 -18 1240 157 4 41 chr6 93986358 93986490 -95293064 - LTR52-int LTR ERVL -2146 1410 1290 370 167 0 14 chr6 93986500 93986572 -95292982 - LTR52-int LTR ERVL -3466 90 20 796 220 85 17 chr6 93986639 93986875 -95292679 - LTR52 LTR ERVL -36 385 134 180 400 17 43 chr6 93989042 93989157 -95290397 - L2 LINE L2 -161 3111 3000 476 237 22 48 chr6 93989332 93989414 -95290140 + MLT1L LTR MaLR 243 326 -289 2059 125 17 0 chr6 93989414 93989701 -95289853 - AluSq SINE Alu -20 293 2 476 237 22 48 chr6 93989701 93989952 -95289602 + MLT1L LTR MaLR 326 613 -2 479 212 164 19 chr6 93991525 93991680 -95287874 - MER5A DNA MER1_type 0 189 4 225 0 0 0 chr6 93994011 93994036 -95285518 + (TAA)n Simple_repeat Simple_repeat 2 26 0 201 154 0 0 chr6 93994281 93994320 -95285234 + (TG)n Simple_repeat Simple_repeat 2 40 0 28285 38 4 0 chr6 93995484 93999920 -95279634 + L1PA4 LINE L1 1697 6152 -3 293 275 59 98 chr6 93999936 94000223 -95279331 - L1M4 LINE L1 -2066 4080 3805 705 277 31 10 chr6 94000226 94000515 -95279039 - L1M4 LINE L1 -2436 3710 3416 441 258 25 87 chr6 94000603 94000878 -95278676 - L1MC4a LINE L1 -1500 6308 6051 1955 246 64 55 chr6 94000880 94001450 -95278104 - L1MC4a LINE L1 -748 5398 5354 2133 182 52 12 chr6 94001450 94001856 -95277698 - MSTB LTR MaLR -4 422 1 1955 246 64 55 chr6 94001856 94002459 -95277095 - L1MC4a LINE L1 -792 5354 4758 2119 119 19 13 chr6 94002478 94002789 -95276765 - AluSq SINE Alu 0 313 1 954 248 9 9 chr6 94003138 94003364 -95276190 - L1MC/D LINE L1 -2141 5667 5442 372 344 10 15 chr6 94006080 94006241 -95273313 - MIR SINE MIR -61 147 17 246 396 27 18 chr6 94007167 94007392 -95272162 + L3 LINE CR1 323 549 -1028 724 289 41 27 chr6 94007441 94007735 -95271819 + L3 LINE CR1 967 1264 -313 253 313 71 10 chr6 94007723 94007822 -95271732 + MIR3 SINE MIR 97 201 -7 * 383 339 55 23 chr6 94007828 94008085 -95271469 + L3 LINE CR1 1253 1517 -60 283 238 0 0 chr6 94008135 94008198 -95271356 + LTR28 LTR ERV1 1 63 -957 * 2322 150 108 5 chr6 94008166 94008592 -95270962 + MER61D LTR ERV1 32 501 0 263 153 102 0 chr6 94008887 94008946 -95270608 + MER61D-int LTR ERV1 183 247 -4970 4603 150 37 59 chr6 94009057 94010423 -95269131 + MER61D-int LTR ERV1 266 4917 -300 461 115 0 13 chr6 94010420 94010498 -95269056 + MER61D-int LTR ERV1 2454 2530 -5007 * 13351 168 41 17 chr6 94010600 94014218 -95265336 + MER61D-int LTR ERV1 2615 5217 0 2229 157 106 7 chr6 94014218 94014679 -95264875 + MER61D LTR ERV1 1 501 0 205 278 14 56 chr6 94014766 94014787 -95264767 + L3b LINE CR1 1514 1534 -49 1077 161 86 0 chr6 94014787 94014961 -95264593 - MER5A DNA MER1_type 0 189 1 205 278 14 56 chr6 94014961 94015011 -95264543 + L3b LINE CR1 1534 1582 -1 306 0 0 0 chr6 94015478 94015512 -95264042 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 88 0 0 chr6 94016762 94016819 -95262735 + AT_rich Low_complexity Low_complexity 1 57 0 883 222 11 0 chr6 94016942 94017118 -95262436 - MER45A DNA AcHobo 0 178 1 273 98 0 0 chr6 94018052 94018093 -95261461 + (TC)n Simple_repeat Simple_repeat 2 42 0 23 54 0 0 chr6 94018216 94018253 -95261301 + AT_rich Low_complexity Low_complexity 1 37 0 1371 213 112 16 chr6 94019344 94019402 -95260152 - MER114 LTR ERV -38 610 559 1654 164 18 11 chr6 94019402 94019723 -95259831 + AluSx SINE Alu 1 323 0 1371 213 112 16 chr6 94019723 94020216 -95259338 - MER114 LTR ERV -89 559 5 25 83 0 0 chr6 94020453 94020513 -95259041 + AT_rich Low_complexity Low_complexity 1 60 0 21873 36 1 0 chr6 94020618 94024029 -95255525 - L1PA4 LINE L1 -3 6152 2714 31 26 0 0 chr6 94024349 94024387 -95255167 + AT_rich Low_complexity Low_complexity 1 38 0 1601 172 13 49 chr6 94024408 94024716 -95254838 + AluJo SINE Alu 1 297 -15 327 349 23 16 chr6 94025348 94025477 -95254077 + MIR SINE MIR 1 130 -132 252 0 0 0 chr6 94025477 94025505 -95254049 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 12197 23 3 0 chr6 94025592 94027791 -95251763 - L1PA2 LINE L1 -3 6152 3950 501 103 0 0 chr6 94027791 94027869 -95251685 - L1PA2 LINE L1 -2680 3466 3389 204 40 0 0 chr6 94027995 94028020 -95251534 + (A)n Simple_repeat Simple_repeat 1 25 0 702 257 89 84 chr6 94028613 94028971 -95250583 + L2 LINE L2 2356 2715 -599 2509 71 0 0 chr6 94028971 94029281 -95250273 + AluY SINE Alu 1 310 -1 262 296 68 0 chr6 94029301 94029389 -95250165 - L2 LINE L2 -1 3312 3219 198 0 0 0 chr6 94030648 94030670 -95248884 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 20352 47 4 1 chr6 94032277 94034979 -95244575 + L1P LINE L1 1306 4015 -2131 475 261 96 68 chr6 94034977 94035375 -95244179 - HAL1 LINE L1 -1425 1082 674 * 465 214 21 14 chr6 94035488 94035628 -95243926 - MER114 LTR ERV -503 145 5 25 83 0 0 chr6 94035865 94035925 -95243629 + AT_rich Low_complexity Low_complexity 1 60 0 20960 37 5 0 chr6 94036031 94039392 -95240162 - L1PA4 LINE L1 -3 6152 2779 182 378 0 17 chr6 94040582 94040701 -95238853 - MIR SINE MIR -111 151 35 2269 91 0 10 chr6 94041197 94041493 -95238061 - AluSx SINE Alu -19 293 1 337 293 240 7 chr6 94042470 94042620 -95236934 - MIR SINE MIR -1 261 77 207 195 24 0 chr6 94042922 94042963 -95236591 + CT-rich Low_complexity Low_complexity 4 45 0 34884 63 29 3 chr6 94043950 94049616 -95229938 - L1PA7 LINE L1 0 6154 339 642 109 0 0 chr6 94049748 94049849 -95229705 + (TA)n Simple_repeat Simple_repeat 2 102 0 190 262 0 0 chr6 94051249 94051291 -95228263 + MER5B DNA MER1_type 1 42 -136 232 308 128 13 chr6 94051298 94051376 -95228178 - MER5B DNA MER1_type -91 87 1 22 0 0 0 chr6 94052333 94052355 -95227199 + AT_rich Low_complexity Low_complexity 1 22 0 2193 187 6 74 chr6 94052742 94052978 -95226576 - MLT1D LTR MaLR -1 504 253 1817 178 17 0 chr6 94052978 94053270 -95226284 - AluJo SINE Alu -15 297 1 2193 187 6 74 chr6 94053270 94053573 -95225981 - MLT1D LTR MaLR -252 253 2 23 0 0 0 chr6 94053846 94053869 -95225685 + AT_rich Low_complexity Low_complexity 1 23 0 287 284 84 11 chr6 94054272 94054367 -95225187 - MIR3 SINE MIR -2 206 105 246 282 94 68 chr6 94055316 94055433 -95224121 - L2 LINE L2 -5 3267 3148 247 318 11 23 chr6 94055636 94055724 -95223830 + L2 LINE L2 3227 3313 0 253 130 56 0 chr6 94056103 94056157 -95223397 - L1MA9 LINE L1 -5 6307 6251 2183 123 27 33 chr6 94056178 94056544 -95223010 - THE1B LTR MaLR 0 364 1 10396 85 22 52 chr6 94056549 94058166 -95221388 - THE1B-int LTR MaLR -12 1568 1 2267 111 22 35 chr6 94058166 94058535 -95221019 - THE1B LTR MaLR 0 364 1 8210 156 44 21 chr6 94058537 94059746 -95219808 - L1MA7 LINE L1 -30 6261 5082 1844 121 62 4 chr6 94059746 94060019 -95219535 + AluSg SINE Alu 1 314 0 226 0 0 0 chr6 94060019 94060044 -95219510 + (TAA)n Simple_repeat Simple_repeat 2 180 0 8210 156 44 21 chr6 94060044 94061486 -95218068 - L1MA7 LINE L1 -1209 5082 3545 2195 83 0 4 chr6 94061571 94061849 -95217705 + AluY SINE Alu 1 277 -34 216 0 0 0 chr6 94061864 94061888 -95217666 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 747 242 123 9 chr6 94062286 94062513 -95217041 + MIR SINE MIR 9 261 -1 245 271 79 79 chr6 94063658 94063835 -95215719 + MLT1L LTR MaLR 36 212 -403 283 233 35 23 chr6 94064027 94064113 -95215441 + MLT1K LTR MaLR 473 559 -29 189 241 0 0 chr6 94064149 94064203 -95215351 + GA-rich Low_complexity Low_complexity 1 54 0 471 143 0 0 chr6 94064793 94064877 -95214677 + L1MA4A LINE L1 6220 6303 0 1167 134 10 36 chr6 94065041 94065235 -95214319 + AluSg/x SINE Alu 119 307 -5 1182 265 211 2 chr6 94065522 94065963 -95213591 + L2 LINE L2 1057 1589 -1725 234 282 102 88 chr6 94066129 94066264 -95213290 - MIR SINE MIR 0 262 121 2449 155 36 2 chr6 94066264 94066676 -95212878 - MSTB LTR MaLR 0 426 1 234 282 102 88 chr6 94066676 94066756 -95212798 - MIR SINE MIR -141 121 44 31444 55 114 0 chr6 94066955 94071434 -95208120 + L1P LINE L1 2 4990 -1156 15640 73 2 1 chr6 94071534 94073698 -95205856 + L1P LINE L1 416 2583 -3563 7620 27 1 0 chr6 94073798 94075191 -95204363 + L1PA4 LINE L1 4766 6155 0 355 288 145 98 chr6 94076086 94076486 -95203068 + L2 LINE L2 2854 3272 0 1950 242 68 24 chr6 94077035 94077480 -95202074 + L1MEc LINE L1 22 446 -5950 2246 103 3 3 chr6 94077480 94077799 -95201755 + AluSq SINE Alu 1 313 0 1950 242 68 24 chr6 94077799 94078230 -95201324 + L1MEc LINE L1 446 1057 -5339 871 270 5 0 chr6 94078230 94078434 -95201120 - MLT1E2 LTR MaLR 0 626 422 703 226 0 0 chr6 94078434 94078558 -95200996 + FLAM_C SINE Alu 1 124 -19 942 242 162 99 chr6 94078576 94079012 -95200542 - MLT1E2 LTR MaLR -193 459 3 695 280 144 17 chr6 94079032 94079503 -95200051 + L1MEc LINE L1 1110 1640 -4756 1548 274 74 19 chr6 94080136 94080607 -95198947 - L2 LINE L2 0 3313 2817 602 264 17 23 chr6 94080609 94080783 -95198771 - MER5B DNA MER1_type -5 173 1 957 230 104 79 chr6 94080784 94080868 -95198686 - L2 LINE L2 -505 2809 2729 921 120 0 0 chr6 94080868 94081010 -95198544 + (TA)n Simple_repeat Simple_repeat 2 143 0 2345 79 0 0 chr6 94081010 94081301 -95198253 - AluY SINE Alu -20 291 1 957 230 104 79 chr6 94081301 94081658 -95197896 - L2 LINE L2 -584 2730 2356 2559 52 0 10 chr6 94082251 94082561 -95196993 - AluY SINE Alu -4 307 1 26 39 0 20 chr6 94084282 94084321 -95195233 + AT_rich Low_complexity Low_complexity 1 40 -10 2277 54 0 7 chr6 94084321 94084597 -95194957 + AluY SINE Alu 23 296 -15 26 39 0 20 chr6 94084597 94084608 -95194946 + AT_rich Low_complexity Low_complexity 40 50 0 284 246 0 0 chr6 94084738 94084795 -95194759 - L2 LINE L2 -1 3312 3256 345 209 55 9 chr6 94085274 94085384 -95194170 - L1MC4 LINE L1 -4 8038 7924 1295 260 95 62 chr6 94085447 94086808 -95192746 - L1ME LINE L1 -4622 1458 6 707 261 66 80 chr6 94086839 94087008 -95192546 + Charlie7 DNA MER1_type 97 267 -2345 2385 115 120 5 chr6 94087008 94087392 -95192162 + MSTA LTR MaLR 1 428 0 707 261 66 80 chr6 94087392 94087813 -95191741 + Charlie7 DNA MER1_type 267 679 -1933 528 291 28 28 chr6 94087814 94087996 -95191558 - L2 LINE L2 -1 3312 3131 5800 86 22 7 chr6 94088148 94088982 -95190572 - L1MA2 LINE L1 0 6304 5459 220 200 0 0 chr6 94090123 94090163 -95189391 + GA-rich Low_complexity Low_complexity 4 43 0 222 37 0 0 chr6 94092695 94092722 -95186832 + (CAA)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr6 94092897 94092926 -95186628 + AT_rich Low_complexity Low_complexity 1 29 0 503 108 12 0 chr6 94093536 94093619 -95185935 + LTR9 LTR ERV1 443 526 -86 189 171 0 0 chr6 94093619 94093654 -95185900 + A-rich Low_complexity Low_complexity 99 133 0 1037 299 124 11 chr6 94094314 94094748 -95184806 - L3 LINE CR1 -1 1576 1094 361 22 0 0 chr6 94094793 94094839 -95184715 - MADE1 DNA Mariner -34 46 1 780 225 67 19 chr6 94095682 94095891 -95183663 - MIR SINE MIR -13 249 31 202 325 25 25 chr6 94096311 94096391 -95183163 - L3b LINE CR1 -96 1487 1408 359 370 34 74 chr6 94097227 94097578 -95181976 - L2 LINE L2 0 3272 2936 225 256 110 116 chr6 94097955 94098055 -95181499 + L3 LINE CR1 1267 1367 -210 1994 155 26 0 chr6 94098055 94098359 -95181195 + AluSx SINE Alu 1 312 0 225 256 110 116 chr6 94098359 94098422 -95181132 + L3 LINE CR1 1367 1429 -148 590 321 49 5 chr6 94098830 94099054 -95180500 - MIR SINE MIR -1 261 28 454 266 104 35 chr6 94099612 94099785 -95179769 + MIR SINE MIR 78 262 0 215 326 113 45 chr6 94100921 94101142 -95178412 + MIR SINE MIR 25 260 -2 299 286 67 21 chr6 94101150 94101304 -95178250 - MIR SINE MIR -67 141 3 180 77 0 0 chr6 94101313 94101339 -95178215 + (T)n Simple_repeat Simple_repeat 1 26 0 262 194 28 0 chr6 94101533 94101605 -95177949 + (TA)n Simple_repeat Simple_repeat 1 74 0 559 287 48 24 chr6 94102590 94102799 -95176755 + MIR SINE MIR 44 257 -5 2326 80 0 7 chr6 94103004 94103327 -95176227 - AluY SINE Alu 0 311 1 779 231 48 16 chr6 94105635 94105821 -95173733 - MIR SINE MIR -69 193 2 2100 127 3 0 chr6 94106516 94106819 -95172735 + AluSx SINE Alu 1 304 0 470 273 69 65 chr6 94107104 94107654 -95171900 + HAL1 LINE L1 1151 1702 -805 221 168 69 20 chr6 94107719 94107820 -95171734 + (TATAA)n Simple_repeat Simple_repeat 4 109 0 188 95 48 32 chr6 94107857 94107920 -95171634 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 334 292 42 80 chr6 94107937 94108338 -95171216 + L1MEc LINE L1 1900 2285 -4111 329 219 67 9 chr6 94108338 94108443 -95171111 + HAL1 LINE L1 94 204 -2303 1100 285 70 42 chr6 94108445 94109042 -95170512 + HAL1 LINE L1 469 1082 -1425 * 16380 61 2 6 chr6 94109040 94112138 -95167416 - L1PA5 LINE L1 -2131 4015 928 245 33 0 0 chr6 94112131 94112161 -95167393 + L1PA5 LINE L1 4021 4050 -2096 * 10722 48 0 3 chr6 94112216 94114316 -95165238 + L1PA5 LINE L1 4054 6154 0 4761 114 6 6 chr6 94114357 94115077 -95164477 + L1PB2 LINE L1 5430 6149 -2 2158 257 67 11 chr6 94115090 94115905 -95163649 + HAL1 LINE L1 1419 2311 -196 254 95 24 0 chr6 94115911 94115953 -95163601 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 348 260 28 121 chr6 94116113 94116436 -95163118 + HAL1 LINE L1 1472 1764 -743 306 298 45 45 chr6 94116654 94116832 -95162722 + HAL1b LINE L1 745 922 -426 231 410 112 0 chr6 94117218 94117352 -95162202 - L2 LINE L2 -1 3271 3123 28 0 0 0 chr6 94117613 94117641 -95161913 + AT_rich Low_complexity Low_complexity 1 28 0 43 20 0 0 chr6 94117788 94117838 -95161716 + AT_rich Low_complexity Low_complexity 1 50 0 269 281 61 35 chr6 94118004 94118118 -95161436 - L2 LINE L2 -1 3271 3155 2007 90 0 4 chr6 94118255 94118522 -95161032 - AluSg SINE Alu -44 266 1 317 308 48 10 chr6 94118929 94119033 -95160521 + L2 LINE L2 3122 3229 -43 426 327 55 35 chr6 94119214 94119269 -95160285 - MIR SINE MIR -1 261 209 396 0 0 0 chr6 94119269 94119313 -95160241 + (TG)n Simple_repeat Simple_repeat 2 45 0 426 327 55 35 chr6 94119313 94119511 -95160043 - MIR SINE MIR -53 209 3 23 0 0 0 chr6 94119939 94119962 -95159592 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 94120003 94120024 -95159530 + AT_rich Low_complexity Low_complexity 1 21 0 402 246 89 9 chr6 94120024 94120210 -95159344 + MIR SINE MIR 38 236 -26 270 202 12 60 chr6 94120221 94120305 -95159249 - MIR SINE MIR -1 261 182 3585 154 25 48 chr6 94120436 94121150 -95158404 + L1MC2 LINE L1 5639 6336 -8 21 0 0 0 chr6 94121210 94121231 -95158323 + AT_rich Low_complexity Low_complexity 1 21 0 611 212 85 18 chr6 94121431 94121596 -95157958 + MER5A DNA MER1_type 1 176 -13 883 171 6 6 chr6 94121706 94121876 -95157678 + MER96B DNA MER1_type? 58 227 -190 21 0 0 0 chr6 94123843 94123864 -95155690 + AT_rich Low_complexity Low_complexity 1 21 0 354 245 0 43 chr6 94124186 94124280 -95155274 + L1MC4 LINE L1 6614 6703 -1339 884 220 16 11 chr6 94125214 94125396 -95154158 + MER5A DNA MER1_type 1 183 -6 2154 123 20 0 chr6 94125400 94125702 -95153852 + AluSc SINE Alu 1 308 -1 264 296 68 0 chr6 94125722 94125810 -95153744 - L2 LINE L2 -1 3312 3219 198 0 0 0 chr6 94127068 94127090 -95152464 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 360 265 214 42 chr6 94128737 94129115 -95150439 - LTR67 LTR ERVL -1 556 114 1257 263 127 86 chr6 94130151 94130626 -95148928 + HAL1 LINE L1 252 706 -1801 923 177 174 64 chr6 94130626 94130953 -95148601 + MLT1A1 LTR MaLR 1 363 -2 1257 263 127 86 chr6 94130953 94131491 -95148063 + HAL1 LINE L1 706 1307 -1200 1116 169 0 6 chr6 94132254 94132437 -95147117 - AluJb SINE Alu 0 312 131 749 21 21 0 chr6 94132439 94132533 -95147021 + (TTCC)n Simple_repeat Simple_repeat 1 96 0 804 134 0 22 chr6 94132553 94132687 -95146867 - AluSq/x SINE Alu -182 131 1 450 268 186 5 chr6 94133020 94133214 -95146340 - MIR SINE MIR -32 230 2 341 264 148 54 chr6 94133459 94133736 -95145818 - L1ME LINE L1 -437 5684 5382 4013 146 43 9 chr6 94135848 94136542 -95143012 + LTR8A LTR ERV1 2 719 -8 1734 139 51 51 chr6 94137103 94137478 -95142076 + THE1C LTR MaLR 1 375 0 645 292 57 10 chr6 94137994 94138186 -95141368 + MIR SINE MIR 61 261 -1 330 354 77 17 chr6 94138379 94138560 -95140994 - MIR3 SINE MIR -14 194 3 350 337 116 11 chr6 94138705 94138895 -95140659 + MIR SINE MIR 20 229 -33 339 145 0 32 chr6 94138961 94139023 -95140531 - Tigger5 DNA MER2_type -2244 79 20 293 312 76 19 chr6 94139712 94139869 -95139685 + MLT1K LTR MaLR 2 167 -421 532 268 151 45 chr6 94140362 94140787 -95138767 + MLT1L LTR MaLR 146 615 0 227 318 9 37 chr6 94141107 94141214 -95138340 - L2 LINE L2 -450 2864 2761 * 320 279 59 37 chr6 94141213 94141349 -95138205 + MER5A DNA MER1_type 20 158 -31 196 343 0 0 chr6 94141375 94141442 -95138112 - L2 LINE L2 -555 2759 2693 406 239 0 0 chr6 94141442 94141530 -95138024 - MER97c DNA MER1_type? 0 1090 1003 2605 214 71 31 chr6 94141560 94141801 -95137753 - MER97c DNA MER1_type? -357 733 503 5259 187 21 11 chr6 94141801 94142870 -95136684 + Tigger6a DNA MER2_type 4 1083 0 2605 214 71 31 chr6 94142870 94143333 -95136221 - MER97c DNA MER1_type? -587 503 1 3364 125 2 2 chr6 94143911 94144408 -95135146 + LOR1a LTR ERV1 1 497 0 405 344 101 11 chr6 94144588 94144864 -95134690 + MER102a DNA MER1_type 30 330 0 2251 176 52 85 chr6 94145612 94146225 -95133329 - L1MC3 LINE L1 -7 7778 7186 298 265 0 15 chr6 94146229 94146297 -95133257 - MLT1F1 LTR MaLR -456 111 45 404 121 0 0 chr6 94146300 94146358 -95133196 - L1MC3 LINE L1 -682 7103 7046 2473 188 33 6 chr6 94146373 94146858 -95132696 - L1MC3 LINE L1 -881 6904 6407 6586 72 40 0 chr6 94148029 94149057 -95130497 - L1PB1 LINE L1 -1 6150 5117 217 320 125 23 chr6 94150759 94150887 -95128667 - MIR3 SINE MIR -41 167 27 248 352 63 19 chr6 94151084 94151243 -95128311 - MIR SINE MIR -50 212 47 243 103 0 0 chr6 94151561 94151600 -95127954 + (CCA)n Simple_repeat Simple_repeat 1 39 0 983 279 123 49 chr6 94152422 94152991 -95126563 + MLT1L LTR MaLR 5 615 0 603 239 161 0 chr6 94153210 94153365 -95126189 - MER5A DNA MER1_type -1 188 9 2625 247 39 42 chr6 94153683 94154606 -95124948 + L1ME LINE L1 45 964 -5106 2313 103 0 0 chr6 94154697 94154997 -95124557 - AluSg SINE Alu -10 300 1 2376 199 107 11 chr6 94155350 94155967 -95123587 + L1MC4 LINE L1 7143 7818 -224 4987 143 50 6 chr6 94155994 94156830 -95122724 - L1MC1 LINE L1 -28 6305 5433 308 218 0 0 chr6 94157152 94157207 -95122347 - MER5B DNA MER1_type 0 178 124 1977 193 85 26 chr6 94157211 94157545 -95122009 + Charlie1 DNA MER1_type 2131 2515 -246 2168 114 3 3 chr6 94157545 94157844 -95121710 + AluSx SINE Alu 3 301 -11 1977 193 85 26 chr6 94157844 94158084 -95121470 + Charlie1 DNA MER1_type 2515 2739 -22 239 276 66 72 chr6 94158109 94158290 -95121264 - L2 LINE L2 -212 3060 2881 202 286 143 42 chr6 94158289 94158408 -95121146 - L2 LINE L2 -1 3271 3141 * 332 272 105 0 chr6 94162864 94162978 -95116576 + MER94 DNA DNA 8 133 -1 26 30 0 0 chr6 94163564 94163597 -95115957 + AT_rich Low_complexity Low_complexity 1 33 0 276 337 40 10 chr6 94164161 94164262 -95115292 - L2 LINE L2 -30 3283 3180 3183 144 45 7 chr6 94164484 94165061 -95114493 + L1MB2 LINE L1 5566 6164 -7 22 56 0 0 chr6 94165761 94165797 -95113757 + AT_rich Low_complexity Low_complexity 1 36 0 234 333 83 0 chr6 94165810 94165906 -95113648 + L2 LINE L2 3138 3241 -31 227 349 141 7 chr6 94165934 94166083 -95113471 - MIR3 SINE MIR -10 198 30 191 261 62 62 chr6 94166151 94166216 -95113338 + L2 LINE L2 3197 3261 -11 182 378 0 17 chr6 94167387 94167506 -95112048 - MIR SINE MIR -111 151 35 2269 91 0 10 chr6 94168002 94168298 -95111256 - AluSx SINE Alu -19 293 1 337 293 240 7 chr6 94169275 94169425 -95110129 - MIR SINE MIR -1 261 77 207 195 24 0 chr6 94169727 94169768 -95109786 + CT-rich Low_complexity Low_complexity 4 45 0 17756 92 8 1 chr6 94170755 94174096 -95105458 - L1PA7 LINE L1 0 6154 2801 1889 134 7 4 chr6 94174327 94174623 -95104931 + AluSq SINE Alu 37 333 0 216 371 89 0 chr6 94175766 94175890 -95103664 + L2 LINE L2 3138 3272 0 277 330 113 51 chr6 94177022 94177413 -95102141 + L2 LINE L2 2126 2540 -774 1164 164 5 5 chr6 94177533 94177753 -95101801 - L1MC1 LINE L1 -390 5943 5724 723 143 0 0 chr6 94177762 94177874 -95101680 + Tigger4(Zombi) DNA MER2_type 3 114 -2617 * 2966 125 14 25 chr6 94177872 94178384 -95101170 + Tigger4(Zombi) DNA MER2_type 2226 2731 0 1430 165 26 4 chr6 94178384 94178651 -95100903 - L1MC1 LINE L1 -626 5718 5446 216 0 0 0 chr6 94178651 94178675 -95100879 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 13263 213 21 17 chr6 94178675 94178917 -95100637 - L1PB1 LINE L1 -7 7582 7342 1785 91 0 0 chr6 94178917 94179137 -95100417 + AluSc SINE Alu 1 220 -89 13263 213 21 17 chr6 94179137 94179255 -95100299 - L1PB1 LINE L1 -247 7342 7226 486 0 0 0 chr6 94179255 94179309 -95100245 + (TA)n Simple_repeat Simple_repeat 2 55 0 387 0 0 0 chr6 94179308 94179351 -95100203 + (TG)n Simple_repeat Simple_repeat 2 44 0 * 13263 213 21 17 chr6 94179309 94183715 -95095839 - L1PB1 LINE L1 -363 7226 2839 1083 187 81 35 chr6 94183726 94184036 -95095518 - L1MB7 LINE L1 0 6184 5861 35640 62 65 2 chr6 94184043 94189822 -95089732 - L1PA3 LINE L1 -3 6152 2 516 238 7 7 chr6 94189824 94189975 -95089579 + L1M4 LINE L1 4100 4250 -1896 3198 139 2 4 chr6 94190154 94190652 -95088902 - LOR1a LTR ERV1 0 497 1 478 103 0 69 chr6 94190652 94190739 -95088815 - LOR1a-int LTR ERV1 0 8120 8040 25055 93 25 24 chr6 94190748 94191154 -95088400 - LOR1a-int LTR ERV1 -2056 6064 5660 2077 125 3 41 chr6 94191154 94191474 -95088080 + AluSx SINE Alu 1 308 -4 25055 93 25 24 chr6 94191474 94193692 -95085862 - LOR1a-int LTR ERV1 -2460 5660 3427 2232 106 0 0 chr6 94193692 94193984 -95085570 + AluSc SINE Alu 1 292 -17 25055 93 25 24 chr6 94193984 94195407 -95084147 - LOR1a-int LTR ERV1 -4693 3427 2008 9358 120 31 24 chr6 94195405 94195708 -95083846 - LOR1a-int LTR ERV1 -6478 1642 1343 * 2244 117 0 3 chr6 94195708 94196008 -95083546 - AluSx SINE Alu -13 299 1 9358 120 31 24 chr6 94196008 94197335 -95082219 - LOR1a-int LTR ERV1 -6777 1343 1 3074 147 6 10 chr6 94197337 94197834 -95081720 - LOR1a LTR ERV1 -2 495 1 1996 151 0 13 chr6 94198438 94198749 -95080805 + AluJb SINE Alu 3 309 -3 269 279 146 16 chr6 94198750 94199134 -95080420 - L1ME4a LINE L1 -21 6100 5667 1040 202 105 16 chr6 94199138 94199395 -95080159 - AluJo SINE Alu -7 305 26 293 302 38 0 chr6 94199439 94199545 -95080009 - L1ME4a LINE L1 -506 5615 5506 664 177 23 31 chr6 94199722 94199852 -95079702 - L2 LINE L2 0 3313 3185 304 203 58 0 chr6 94199896 94199965 -95079589 - MIR SINE MIR -6 256 184 6411 177 4 19 chr6 94199980 94201117 -95078437 + L1PA16 LINE L1 18 1138 -5711 * 7523 210 151 21 chr6 94201109 94202514 -95077040 + L1PA16 LINE L1 2363 3585 -3284 2383 83 0 32 chr6 94202514 94202826 -95076728 + AluY SINE Alu 1 302 -9 7523 210 151 21 chr6 94202826 94204705 -95074849 + L1PA16 LINE L1 3585 5220 -1649 2080 50 4 8 chr6 94204705 94204965 -95074589 + AluY SINE Alu 35 293 -18 7523 210 151 21 chr6 94204965 94205520 -95074034 + L1PA16 LINE L1 5220 5702 -1167 1911 173 0 0 chr6 94205520 94205821 -95073733 + AluJb SINE Alu 1 301 -11 7523 210 151 21 chr6 94205821 94205957 -95073597 + L1PA16 LINE L1 5702 6867 -2 298 269 126 25 chr6 94206028 94206147 -95073407 - MIR SINE MIR -123 139 9 33 66 0 0 chr6 94206225 94206286 -95073268 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr6 94206352 94206374 -95073180 + AT_rich Low_complexity Low_complexity 1 22 0 2837 3 0 0 chr6 94207335 94207640 -95071914 - AluYa5 SINE Alu -6 305 1 1431 176 33 0 chr6 94208010 94208283 -95071271 - MLT2D LTR ERVL -132 282 1 2077 108 14 0 chr6 94208725 94209003 -95070551 - AluSx SINE Alu -30 282 1 198 306 198 0 chr6 94209072 94209193 -95070361 + MIR SINE MIR 48 192 -70 2728 111 36 5 chr6 94209327 94209742 -95069812 + MSTA LTR MaLR 1 428 0 1848 99 39 42 chr6 94210414 94210725 -95068829 - AluSx SINE Alu 0 310 1 402 218 0 0 chr6 94210776 94210854 -95068700 - MER94 DNA DNA -15 119 42 234 0 0 0 chr6 94211099 94211125 -95068429 + (CA)n Simple_repeat Simple_repeat 1 26 0 27 49 0 0 chr6 94211612 94211653 -95067901 + AT_rich Low_complexity Low_complexity 1 41 0 1836 172 68 36 chr6 94212116 94212559 -95066995 + LTR2B LTR ERV1 34 490 0 209 350 20 40 chr6 94213078 94213178 -95066376 - MIR SINE MIR -76 132 35 252 349 122 72 chr6 94215003 94215338 -95064216 - L2 LINE L2 -3 3269 2918 309 291 101 14 chr6 94215540 94215688 -95063866 + MIR SINE MIR 21 181 -81 778 253 159 48 chr6 94215760 94216214 -95063340 - MLT1K LTR MaLR 0 588 85 743 256 102 70 chr6 94216374 94216745 -95062809 - MLT1L LTR MaLR -52 563 181 1825 201 30 39 chr6 94218142 94218580 -95060974 - MLT1C LTR MaLR 0 467 34 455 104 0 0 chr6 94218593 94218660 -95060894 - MER41A LTR ERV1 -88 466 400 228 108 54 0 chr6 94218659 94218696 -95060858 - MLT1C LTR MaLR -423 44 6 * 205 194 28 0 chr6 94221113 94221149 -95058405 + L2 LINE L2 3228 3264 -8 506 233 29 52 chr6 94221674 94221846 -95057708 - MIR SINE MIR -16 246 79 247 210 148 0 chr6 94221935 94222016 -95057538 - MER91C DNA MER1_type -43 97 5 1662 128 98 0 chr6 94222415 94222689 -95056865 - AluSx SINE Alu -11 301 1 2203 141 5 35 chr6 94223431 94223806 -95055748 - MLT1A1 LTR MaLR -1 364 1 187 341 33 11 chr6 94224273 94224364 -95055190 + MIR SINE MIR 28 120 -142 245 309 163 52 chr6 94224767 94225000 -95054554 - L2 LINE L2 -908 2406 2148 241 328 42 8 chr6 94225009 94225128 -95054426 - L2 LINE L2 -1354 1960 1838 208 302 31 21 chr6 94227978 94228074 -95051480 - L2 LINE L2 -668 2646 2550 530 335 48 5 chr6 94228122 94228331 -95051223 - MIR SINE MIR -12 250 33 1237 180 73 38 chr6 94228429 94228708 -95050846 + MLT2D LTR ERVL 85 378 -36 453 19 0 0 chr6 94228708 94228762 -95050792 + (CA)n Simple_repeat Simple_repeat 1 54 0 1237 180 73 38 chr6 94228762 94228799 -95050755 + MLT2D LTR ERVL 378 412 -2 243 0 0 0 chr6 94229034 94229061 -95050493 + (CA)n Simple_repeat Simple_repeat 2 28 0 210 229 0 21 chr6 94229079 94229127 -95050427 + (TG)n Simple_repeat Simple_repeat 2 48 0 210 208 0 0 chr6 94229136 94229184 -95050370 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 190 219 0 0 chr6 94230674 94230706 -95048848 - MIR SINE MIR -84 124 93 260 239 68 43 chr6 94231669 94231786 -95047768 + MLT1L LTR MaLR 496 615 0 2282 101 0 10 chr6 94232333 94232631 -95046923 + AluSx SINE Alu 1 295 -17 313 127 36 0 chr6 94233299 94233354 -95046200 - AluSx SINE Alu 0 301 245 1387 140 0 0 chr6 94233359 94233552 -95046002 - AluSx SINE Alu -119 193 1 353 250 33 11 chr6 94233600 94233692 -95045862 + MIR3 SINE MIR 87 180 -28 532 299 29 95 chr6 94234535 94234809 -95044745 - L2 LINE L2 0 3272 3017 661 308 62 9 chr6 94234886 94235097 -95044457 - MIR SINE MIR -16 246 25 1639 188 24 3 chr6 94235292 94235584 -95043970 + AluJo SINE Alu 1 298 -14 347 266 106 101 chr6 94235901 94236307 -95043247 + HAL1 LINE L1 608 1015 -1492 * 417 300 29 37 chr6 94236304 94236547 -95043007 + HAL1 LINE L1 2246 2486 -21 689 177 109 7 chr6 94237128 94237275 -95042279 + MER3 DNA MER1_type 1 162 -47 1031 144 0 0 chr6 94237993 94238139 -95041415 + FRAM SINE Alu 1 146 -30 2406 144 5 3 chr6 94238219 94238607 -95040947 + L1M3 LINE L1 5431 5819 -352 2101 127 7 7 chr6 94238641 94238949 -95040605 + AluSx SINE Alu 1 308 -4 541 196 19 37 chr6 94239039 94239146 -95040408 + L2 LINE L2 3207 3311 -2 347 198 198 0 chr6 94240502 94240598 -95038956 - L1ME3 LINE L1 -120 6042 5928 256 278 0 0 chr6 94240602 94240656 -95038898 + MER5A DNA MER1_type 136 189 0 29 28 0 0 chr6 94241184 94241220 -95038334 + AT_rich Low_complexity Low_complexity 1 36 0 490 311 87 9 chr6 94242236 94242558 -95036996 - L1ME3 LINE L1 -224 5897 5551 209 374 0 9 chr6 94242710 94242817 -95036737 + GA-rich Low_complexity Low_complexity 2 107 0 321 317 84 0 chr6 94243054 94243196 -95036358 - MIR SINE MIR -62 200 47 730 259 218 30 chr6 94243645 94244016 -95035538 + MLT1J1 LTR MaLR 1 441 -5 218 265 0 0 chr6 94244133 94244182 -95035372 + (TG)n Simple_repeat Simple_repeat 1 49 0 24 0 0 0 chr6 94244950 94244974 -95034580 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 94245029 94245050 -95034504 + AT_rich Low_complexity Low_complexity 1 21 0 764 304 153 33 chr6 94245870 94246597 -95032957 + L2 LINE L2 1293 2106 -1208 632 282 93 5 chr6 94246942 94247158 -95032396 + MIR SINE MIR 1 235 -27 558 292 107 34 chr6 94247241 94247663 -95031891 + LTR67 LTR ERVL 71 552 -5 297 291 73 40 chr6 94247804 94247955 -95031599 + LTR33A LTR ERVL 61 216 -307 518 263 72 10 chr6 94248181 94248375 -95031179 + LTR33A LTR ERVL 302 507 -16 777 270 52 5 chr6 94248579 94248790 -95030764 + MIR SINE MIR 34 254 -8 2641 158 19 0 chr6 94248808 94249238 -95030316 + MSTB2 LTR MaLR 1 438 -19 545 192 58 0 chr6 94249332 94249452 -95030102 + L1MC1 LINE L1 5954 6080 -253 437 223 8 50 chr6 94249452 94249573 -95029981 - MIR SINE MIR -125 137 22 3143 144 33 20 chr6 94250074 94250617 -95028937 + MER44D DNA MER2_type 1 605 0 307 283 11 11 chr6 94251656 94251748 -95027806 - L1MC4 LINE L1 -1337 6705 6614 198 103 0 0 chr6 94251751 94251780 -95027774 + (TA)n Simple_repeat Simple_repeat 1 29 0 413 327 144 5 chr6 94252717 94252925 -95026629 + MIR SINE MIR 20 256 -6 1596 184 157 0 chr6 94252989 94253353 -95026201 - MER63B DNA MER1_type -1 435 15 21 0 0 0 chr6 94253592 94253613 -95025941 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 94253887 94253911 -95025643 + AT_rich Low_complexity Low_complexity 1 24 0 630 286 99 29 chr6 94255089 94255362 -95024192 + LTR16C LTR ERVL 200 491 0 264 352 239 16 chr6 94255373 94255620 -95023934 + L2 LINE L2 2963 3264 -8 221 255 0 0 chr6 94255629 94255680 -95023874 + A-rich Low_complexity Low_complexity 4 54 0 513 214 24 16 chr6 94256434 94256657 -95022897 - MER112 DNA MER1_type 0 260 1 2036 115 23 7 chr6 94256737 94257042 -95022512 + AluSg SINE Alu 1 310 0 312 280 51 8 chr6 94257042 94257160 -95022394 + MER5A DNA MER1_type 60 182 -7 362 262 257 19 chr6 94257290 94257500 -95022054 + MIR SINE MIR 3 262 0 219 299 159 47 chr6 94257536 94257643 -95021911 - L2 LINE L2 0 3272 3154 2134 101 28 0 chr6 94257668 94257954 -95021600 - AluSg SINE Alu -4 306 13 700 130 65 0 chr6 94258056 94258179 -95021375 + MER63D DNA MER1_type 119 249 -812 3694 136 30 39 chr6 94258220 94258253 -95021301 - L1MB2 LINE L1 -1 6170 6138 2185 111 0 7 chr6 94258253 94258551 -95021003 + AluSg SINE Alu 1 296 -14 3694 136 30 39 chr6 94258551 94259218 -95020336 - L1MB2 LINE L1 -33 6138 5476 1145 117 0 82 chr6 94259218 94259414 -95020140 - AluJb SINE Alu -12 300 121 903 189 88 35 chr6 94259429 94259689 -95019865 + MER63D DNA MER1_type 382 655 -406 784 247 35 0 chr6 94259701 94259871 -95019683 - MER58A DNA MER1_type -11 213 38 1252 181 46 8 chr6 94259895 94260155 -95019399 + MER63D DNA MER1_type 650 919 -142 258 262 24 24 chr6 94263197 94263281 -95016273 + MIR SINE MIR 82 165 -97 27 96 0 0 chr6 94263318 94263401 -95016153 + AT_rich Low_complexity Low_complexity 1 83 0 307 330 33 0 chr6 94263517 94263608 -95015946 - MIR SINE MIR -48 214 121 17999 44 61 3 chr6 94263609 94266039 -95013515 + L1P LINE L1 1 2572 -3574 18178 116 16 32 chr6 94266139 94269869 -95009685 - L1P3 LINE L1 -2369 4092 346 255 275 12 25 chr6 94269892 94269972 -95009582 - MER5B DNA MER1_type -99 79 1 23 54 0 0 chr6 94271320 94271357 -95008197 + AT_rich Low_complexity Low_complexity 1 37 0 343 300 0 0 chr6 94271934 94272014 -95007540 - MIR SINE MIR -60 148 69 233 269 83 37 chr6 94272449 94272557 -95006997 + L1MC/D LINE L1 5645 5757 -2051 234 30 0 30 chr6 94272566 94272599 -95006955 - MLT2D LTR ERVL 0 414 383 180 0 0 0 chr6 94272613 94272633 -95006921 + (CA)n Simple_repeat Simple_repeat 2 21 0 6981 122 67 15 chr6 94272634 94273547 -95006007 - HSMAR2 DNA Mariner -10 1292 297 5362 132 12 2 chr6 94273547 94274856 -95004698 - L1PA15 LINE L1 -2 6163 4821 6981 122 67 15 chr6 94274856 94275167 -95004387 - HSMAR2 DNA Mariner -1005 297 4 414 0 0 0 chr6 94275167 94275213 -95004341 + (TG)n Simple_repeat Simple_repeat 2 47 0 1527 156 190 31 chr6 94275248 94275638 -95003916 - MLT2B1 LTR ERVL -66 454 3 2167 110 7 0 chr6 94275772 94276064 -95003490 - AluSc SINE Alu -15 294 1 432 248 0 8 chr6 94277280 94277397 -95002157 - MER94 DNA DNA -18 116 1 728 291 92 34 chr6 94277757 94278203 -95001351 + MLT1L LTR MaLR 144 615 0 181 263 50 50 chr6 94278432 94278512 -95001042 + L2 LINE L2 3234 3313 0 36 62 0 0 chr6 94279543 94279607 -94999947 + AT_rich Low_complexity Low_complexity 1 64 0 28477 62 3 1 chr6 94279615 94283446 -94996108 + L1P LINE L1 3 3840 -2306 192 125 0 0 chr6 94285005 94285037 -94994517 + (T)n Simple_repeat Simple_repeat 1 32 0 1313 194 0 24 chr6 94285039 94285287 -94994267 - AluJb SINE Alu -70 242 1 210 114 45 0 chr6 94285297 94285346 -94994208 + (TA)n Simple_repeat Simple_repeat 1 51 0 566 249 111 0 chr6 94285397 94285591 -94993963 - MIR SINE MIR -4 258 44 1133 121 0 0 chr6 94286003 94286176 -94993378 - MER2 DNA MER2_type -172 173 1 508 286 119 40 chr6 94287932 94288273 -94991281 + MLT1J1 LTR MaLR 67 439 -11 997 180 22 6 chr6 94288273 94288456 -94991098 + MER5A DNA MER1_type 1 186 -3 623 356 59 16 chr6 94288501 94288872 -94990682 + L2 LINE L2 274 660 -2654 1327 340 143 13 chr6 94288878 94289959 -94989595 + L2 LINE L2 1649 2869 -445 273 253 63 0 chr6 94289961 94290040 -94989514 + MIR SINE MIR 70 153 -109 428 95 50 53 chr6 94290553 94290883 -94988671 + (TA)n Simple_repeat Simple_repeat 1 329 0 6826 61 5 3 chr6 94290883 94292359 -94987195 - L1PA7 LINE L1 -12 6142 4664 25 0 0 0 chr6 94292831 94292856 -94986698 + AT_rich Low_complexity Low_complexity 1 25 0 2127 122 7 3 chr6 94294686 94294980 -94984574 - AluSg SINE Alu -13 297 3 256 293 0 0 chr6 94295188 94295246 -94984308 - L2 LINE L2 -11 3261 3204 285 73 0 0 chr6 94295478 94295519 -94984035 + Alu SINE Alu 257 297 -5 2125 114 7 0 chr6 94295583 94295885 -94983669 + AluSx SINE Alu 1 304 0 4500 218 67 12 chr6 94295885 94297136 -94982418 + Charlie1 DNA MER1_type 1442 2761 0 2441 95 0 6 chr6 94297371 94297686 -94981868 + AluSq SINE Alu 1 313 0 15143 135 11 103 chr6 94297697 94301202 -94978352 + L1P LINE L1 12 3193 -2953 1075 91 0 0 chr6 94301203 94301335 -94978219 + AluY SINE Alu 1 132 -179 15929 93 9 2 chr6 94301454 94301687 -94977867 + L1PA7 LINE L1 2962 3192 -2962 1461 128 0 40 chr6 94301687 94301914 -94977640 + AluY SINE Alu 1 218 -93 15929 93 9 2 chr6 94301914 94304874 -94974680 + L1PA7 LINE L1 3192 6147 -7 21 0 0 0 chr6 94304890 94304911 -94974643 + AT_rich Low_complexity Low_complexity 1 21 0 477 282 167 6 chr6 94305432 94305588 -94973966 + MER5A DNA MER1_type 9 189 0 249 303 45 83 chr6 94305606 94305738 -94973816 + MER5B DNA MER1_type 11 137 -41 2009 152 6 3 chr6 94306121 94306456 -94973098 - Tigger1 DNA MER2_type 0 2418 2083 917 137 0 128 chr6 94306467 94306671 -94972883 + AluJo SINE Alu 3 180 -132 11613 125 23 49 chr6 94306674 94308774 -94970780 - Tigger1 DNA MER2_type -371 2047 1 2387 134 10 25 chr6 94308799 94309195 -94970359 - MLT1B LTR MaLR 0 390 1 2259 114 3 0 chr6 94309201 94309509 -94970045 + AluSx SINE Alu 1 309 -3 25 65 0 0 chr6 94309640 94309686 -94969868 + AT_rich Low_complexity Low_complexity 1 46 0 401 211 28 16 chr6 94309855 94309997 -94969557 - L1MD3 LINE L1 0 7995 7639 450 245 177 46 chr6 94310188 94310443 -94969111 - MLT1K LTR MaLR 0 588 368 2386 206 50 37 chr6 94310443 94311058 -94968496 + MLT1E3 LTR MaLR 1 623 -1 450 245 177 46 chr6 94311058 94311140 -94968414 - MLT1K LTR MaLR -220 368 135 705 233 17 28 chr6 94311231 94311411 -94968143 + MIR SINE MIR 85 262 0 231 311 0 0 chr6 94312195 94312256 -94967298 - MER69 DNA AcHobo 0 2526 2466 454 244 44 30 chr6 94312285 94312420 -94967134 - MER69 DNA AcHobo -1089 137 1 12382 149 26 6 chr6 94313087 94316600 -94962954 - L1MA3 LINE L1 0 7724 4136 3019 102 17 0 chr6 94316597 94317056 -94962498 - L1MA3 LINE L1 -4572 2993 2527 * 1765 64 8 4 chr6 94317063 94317298 -94962256 - MER75B DNA T2_type -7 236 1 15804 154 16 5 chr6 94317298 94319793 -94959761 - L1MA3 LINE L1 -5035 2530 9 1515 167 3 105 chr6 94320094 94320436 -94959118 - AluJo SINE Alu -5 307 1 301 248 110 9 chr6 94320514 94320623 -94958931 - LTR16C LTR ERVL 0 491 372 237 342 8 50 chr6 94322075 94322195 -94957359 - MER5A DNA MER1_type -1 188 74 25 0 0 0 chr6 94322421 94322446 -94957108 + AT_rich Low_complexity Low_complexity 1 25 0 416 305 24 18 chr6 94323488 94323655 -94955899 - MER117 DNA MER1_type 0 197 30 1486 197 72 31 chr6 94324590 94324910 -94954644 - MSTD LTR MaLR 0 396 64 272 170 0 0 chr6 94324911 94324958 -94954596 + Tigger7 DNA MER2_type 2 48 -291 1253 132 70 0 chr6 94324959 94325186 -94954368 + Tigger7 DNA MER2_type 2345 2587 0 287 179 71 0 chr6 94325192 94325248 -94954306 - MSTD LTR MaLR -368 60 1 4838 226 41 110 chr6 94325248 94325306 -94954248 - MSTD-int LTR MaLR 0 1735 1675 2161 82 0 56 chr6 94325306 94325611 -94953943 + AluSc SINE Alu 1 288 -21 4838 226 41 110 chr6 94325611 94327157 -94952397 - MSTD-int LTR MaLR -60 1675 241 1619 180 4 0 chr6 94327158 94327425 -94952129 + Tigger4(Zombi) DNA MER2_type 3 270 -2461 1420 130 30 0 chr6 94327421 94327652 -94951902 + Tigger4(Zombi) DNA MER2_type 2494 2731 0 * 545 234 48 0 chr6 94327652 94327776 -94951778 - MSTD-int LTR MaLR -1492 243 114 569 184 0 9 chr6 94327890 94327999 -94951555 - MSTD-int LTR MaLR -1626 109 2 1414 218 87 8 chr6 94328001 94328368 -94951186 - MSTD LTR MaLR 0 396 1 21 0 0 0 chr6 94330261 94330282 -94949272 + AT_rich Low_complexity Low_complexity 1 21 0 455 136 0 11 chr6 94330471 94330559 -94948995 + (TCCC)n Simple_repeat Simple_repeat 4 90 0 1422 272 76 22 chr6 94330559 94331319 -94948235 - L1MC4a LINE L1 -743 5797 5481 275 204 28 28 chr6 94331326 94331434 -94948120 + (TA)n Simple_repeat Simple_repeat 1 108 0 311 331 19 19 chr6 94331667 94331927 -94947627 - L1MC4a LINE L1 -3572 2968 2709 305 228 91 82 chr6 94332018 94332237 -94947317 - L1MC4a LINE L1 -3959 2581 2361 718 275 99 38 chr6 94332547 94332991 -94946563 - HAL1b LINE L1 -618 730 260 586 278 80 0 chr6 94333247 94333423 -94946131 - MIR SINE MIR -61 201 12 551 226 165 18 chr6 94333565 94333729 -94945825 + MER20 DNA MER1_type 1 188 -31 386 291 77 22 chr6 94336012 94336194 -94943360 + MIR SINE MIR 66 257 -5 302 0 0 26 chr6 94336196 94336235 -94943319 + (ATG)n Simple_repeat Simple_repeat 2 39 0 234 340 96 0 chr6 94337068 94337162 -94942392 + L2 LINE L2 3152 3254 -18 591 237 71 108 chr6 94337350 94337645 -94941909 + MER102b DNA MER1_type 57 340 -1 583 269 88 26 chr6 94337820 94338162 -94941392 + L1ME4a LINE L1 5755 6117 -4 229 142 35 35 chr6 94338300 94338413 -94941141 + (TA)n Simple_repeat Simple_repeat 2 114 0 420 201 0 22 chr6 94338439 94338623 -94940931 + (TA)n Simple_repeat Simple_repeat 1 180 0 49 60 0 0 chr6 94338625 94338709 -94940845 + AT_rich Low_complexity Low_complexity 1 84 0 252 149 58 23 chr6 94338720 94338781 -94940773 + (TA)n Simple_repeat Simple_repeat 1 58 -122 2014 152 0 0 chr6 94338781 94339070 -94940484 - AluSx SINE Alu -21 291 3 252 149 58 23 chr6 94339070 94339182 -94940372 + (TA)n Simple_repeat Simple_repeat 58 180 0 2246 60 0 7 chr6 94339493 94339812 -94939742 + AluY SINE Alu 1 317 0 1270 194 152 39 chr6 94340215 94340571 -94938983 - MSTD LTR MaLR 0 396 1 2173 52 3 81 chr6 94340614 94340922 -94938632 + AluSg SINE Alu 1 284 -26 285 29 0 0 chr6 94340922 94340956 -94938598 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 283 291 58 48 chr6 94341024 94341230 -94938324 - MIR SINE MIR -42 220 13 23 33 0 0 chr6 94341967 94341997 -94937557 + AT_rich Low_complexity Low_complexity 1 30 0 1969 118 40 40 chr6 94342880 94342912 -94936642 - L1MC3 LINE L1 -239 7546 7515 1775 140 69 26 chr6 94342912 94343262 -94936292 - MLT1A1 LTR MaLR 0 365 1 1969 118 40 40 chr6 94343262 94343371 -94936183 - L1MC3 LINE L1 -270 7515 7407 2745 101 3 3 chr6 94343371 94343746 -94935808 + THE1C LTR MaLR 1 375 0 1969 118 40 40 chr6 94343746 94343950 -94935604 - L1MC3 LINE L1 -377 7408 7200 232 330 30 10 chr6 94343950 94344050 -94935504 - MLT1F1 LTR MaLR -430 137 36 2273 165 110 78 chr6 94344080 94344452 -94935102 - L1MC3 LINE L1 -1811 5974 5571 2121 72 0 0 chr6 94344452 94344717 -94934837 - AluY SINE Alu -12 299 35 2273 165 110 78 chr6 94344717 94344987 -94934567 - L1MC3 LINE L1 -2214 5571 5311 285 284 290 11 chr6 94345681 94345864 -94933690 - MIR SINE MIR -14 248 15 209 346 79 10 chr6 94346786 94346887 -94932667 + MIR SINE MIR 20 127 -135 292 290 60 0 chr6 94347854 94347954 -94931600 - L2 LINE L2 -2 3311 3206 1338 194 92 74 chr6 94348072 94348531 -94931023 + MLT1C LTR MaLR 1 467 0 197 208 56 97 chr6 94349649 94349721 -94929833 + MIR SINE MIR 86 154 -108 1603 218 30 53 chr6 94350246 94350713 -94928841 + LTR40c LTR ERVL 1 456 -9 353 367 62 0 chr6 94350805 94350933 -94928621 + MIR3 SINE MIR 21 156 -52 363 272 22 11 chr6 94351522 94351614 -94927940 + MER81 DNA DNA 1 93 -21 237 158 53 66 chr6 94352013 94352089 -94927465 + L1ME4a LINE L1 5945 6019 -102 207 0 0 0 chr6 94352799 94352822 -94926732 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 212 372 55 18 chr6 94354229 94354447 -94925107 - L2 LINE L2 -493 2821 2596 1487 190 70 14 chr6 94354486 94354934 -94924620 - MLT1D LTR MaLR 0 505 1 2083 224 55 9 chr6 94355240 94355766 -94923788 - L1MC4a LINE L1 -2 7806 7257 245 283 152 20 chr6 94355880 94355979 -94923575 - MIR SINE MIR -13 249 138 220 269 39 39 chr6 94356039 94356117 -94923437 + L2 LINE L2 3231 3308 -5 251 284 157 30 chr6 94356909 94357043 -94922511 + MIR3 SINE MIR 27 177 -31 378 0 0 0 chr6 94357986 94358028 -94921526 + (TG)n Simple_repeat Simple_repeat 2 43 0 305 264 72 24 chr6 94358202 94358327 -94921227 + MIR SINE MIR 85 215 -47 233 271 213 8 chr6 94358328 94358450 -94921104 + MIR SINE MIR 79 225 -37 857 56 0 0 chr6 94358807 94358914 -94920640 + L1PA5 LINE L1 5905 6011 -143 923 179 35 48 chr6 94360927 94361156 -94918398 - L1ME2 LINE L1 -1 6163 5938 2076 106 0 4 chr6 94361198 94361472 -94918082 - AluSx SINE Alu -20 292 20 1356 308 82 12 chr6 94361493 94361980 -94917574 + MLT1G1 LTR MaLR 75 595 0 2646 250 48 18 chr6 94361980 94362026 -94917528 - L1ME2 LINE L1 -235 5929 5886 2197 156 105 55 chr6 94362026 94362521 -94917033 + MLT2B1 LTR ERVL 1 520 0 2646 250 48 18 chr6 94362521 94363940 -94915614 - L1ME2 LINE L1 -278 5886 4422 772 299 149 13 chr6 94363956 94364331 -94915223 - L2 LINE L2 0 3313 2888 1162 334 122 23 chr6 94364362 94365200 -94914354 - L2 LINE L2 -1880 1434 514 1988 142 3 7 chr6 94365209 94365505 -94914049 + AluJb SINE Alu 12 306 -6 417 357 70 11 chr6 94365536 94365721 -94913833 - L2 LINE L2 -3032 282 87 27 62 0 0 chr6 94366151 94366199 -94913355 + AT_rich Low_complexity Low_complexity 1 48 0 198 118 0 0 chr6 94367857 94367891 -94911663 + (TTA)n Simple_repeat Simple_repeat 2 35 0 23 33 0 0 chr6 94367976 94368006 -94911548 + AT_rich Low_complexity Low_complexity 1 30 0 1466 276 103 3 chr6 94368236 94368820 -94910734 - L1ME3A LINE L1 -263 5907 5266 758 284 105 18 chr6 94368956 94369743 -94909811 + L1M4 LINE L1 4099 4972 -1174 280 284 95 29 chr6 94370409 94370612 -94908942 + MLT1L LTR MaLR 290 607 -8 438 311 65 67 chr6 94370690 94371366 -94908188 + L1M4 LINE L1 2543 3217 -2929 316 311 52 44 chr6 94371466 94371736 -94907818 + L1P LINE L1 3370 3641 -2505 679 308 153 60 chr6 94371799 94372129 -94907425 + L1M4 LINE L1 3713 4011 -2135 658 270 89 13 chr6 94372129 94372366 -94907188 - MIR SINE MIR -3 259 5 679 308 153 60 chr6 94372366 94373166 -94906388 + L1M4 LINE L1 4011 4948 -1198 5149 264 43 26 chr6 94373171 94375805 -94903749 - HERVL40 LTR ERVL -2232 3298 566 1094 249 63 85 chr6 94375842 94376303 -94903251 - HERVL40 LTR ERVL -4960 570 120 201 39 0 0 chr6 94376432 94376458 -94903096 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 599 155 24 24 chr6 94376458 94376626 -94902928 + CT-rich Low_complexity Low_complexity 4 171 0 231 115 0 66 chr6 94376636 94376697 -94902857 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 664 147 25 25 chr6 94376708 94376948 -94902606 + CT-rich Low_complexity Low_complexity 1 240 0 368 39 0 20 chr6 94376948 94376999 -94902555 + (TCCCC)n Simple_repeat Simple_repeat 2 51 0 1416 218 35 0 chr6 94376999 94377288 -94902266 - AluJb SINE Alu -13 299 1 1805 219 34 54 chr6 94377289 94377760 -94901794 - LTR40a LTR ERVL -24 495 33 2481 52 3 10 chr6 94377760 94378065 -94901489 + AluY SINE Alu 1 303 -8 1805 219 34 54 chr6 94378065 94378095 -94901459 - LTR40a LTR ERVL -486 33 4 384 173 125 0 chr6 94378097 94378201 -94901353 - MER114 LTR ERV -277 371 255 234 318 80 0 chr6 94378842 94378930 -94900624 - L3 LINE CR1 -3 1574 1480 33 43 0 0 chr6 94378931 94378978 -94900576 + AT_rich Low_complexity Low_complexity 1 47 0 774 298 25 20 chr6 94379278 94379523 -94900031 + MIR SINE MIR 3 248 -14 29 0 0 0 chr6 94379641 94379670 -94899884 + AT_rich Low_complexity Low_complexity 1 29 0 313 320 16 8 chr6 94379890 94380012 -94899542 - MIR SINE MIR -76 186 64 250 366 122 32 chr6 94381664 94381787 -94897767 + L2 LINE L2 3137 3270 -2 1355 216 16 29 chr6 94382501 94382807 -94896747 - AluJo SINE Alu -10 302 1 219 333 54 18 chr6 94382818 94382929 -94896625 + MER5A DNA MER1_type 7 121 -68 1851 171 10 56 chr6 94382952 94383361 -94896193 - MLT1B LTR MaLR 0 390 1 1659 190 19 33 chr6 94383863 94384231 -94895323 + MLT1A1 LTR MaLR 1 363 -2 233 290 186 35 chr6 94384292 94384437 -94895117 + L2 LINE L2 3147 3313 0 262 203 94 0 chr6 94387291 94387355 -94892199 - MIR3 SINE MIR -2 206 137 9740 183 47 19 chr6 94387420 94389449 -94890105 - L1MC3 LINE L1 -3 7782 5696 686 303 102 29 chr6 94389481 94389795 -94889759 - MLT1J1 LTR MaLR -107 339 3 417 302 74 16 chr6 94391061 94391250 -94888304 - MLT1J1 LTR MaLR -44 402 203 438 241 103 17 chr6 94391253 94391369 -94888185 - MLT1J2 LTR MaLR -304 146 21 435 288 0 39 chr6 94392702 94392855 -94886699 - MER112 DNA MER1_type -17 243 97 776 287 60 0 chr6 94392935 94393151 -94886403 + MIR SINE MIR 15 243 -19 24 0 0 0 chr6 94393800 94393824 -94885730 + AT_rich Low_complexity Low_complexity 1 24 0 367 221 6 6 chr6 94393977 94394070 -94885484 - MIR3 SINE MIR -11 197 104 237 353 22 22 chr6 94394140 94394276 -94885278 - MIR SINE MIR -37 225 90 476 305 17 50 chr6 94394417 94394656 -94884898 + L2 LINE L2 940 1170 -2144 779 314 110 3 chr6 94394656 94395178 -94884376 + L2 LINE L2 2478 3054 -259 21 36 0 0 chr6 94395278 94395306 -94884248 + AT_rich Low_complexity Low_complexity 1 28 0 436 289 44 53 chr6 94396999 94397232 -94882322 + LTR50 LTR ERVL 8 240 -281 303 259 145 0 chr6 94397427 94397558 -94881996 + LTR33A LTR ERVL 374 523 0 486 297 60 12 chr6 94397715 94397964 -94881590 - MIR SINE MIR 0 262 2 344 261 34 34 chr6 94398126 94398245 -94881309 + L2 LINE L2 3192 3310 -3 216 0 0 0 chr6 94398429 94398453 -94881101 + (A)n Simple_repeat Simple_repeat 1 24 0 1950 236 56 81 chr6 94399128 94400044 -94879510 + MER97b DNA MER1_type? 2 894 0 315 0 0 0 chr6 94400276 94400311 -94879243 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 245 231 0 0 chr6 94400314 94400366 -94879188 - L1M3 LINE L1 -567 5613 5562 2236 258 77 18 chr6 94400382 94401411 -94878143 - L1M3 LINE L1 -729 5445 4358 * 7078 21 0 0 chr6 94401400 94402214 -94877340 - L1PA2 LINE L1 0 6155 5342 2059 48 0 0 chr6 94402515 94402765 -94876789 - L1PA5 LINE L1 0 6154 5905 235 253 165 0 chr6 94403122 94403213 -94876341 - MIR SINE MIR -37 225 120 287 268 73 24 chr6 94403246 94403369 -94876185 - MIR SINE MIR -49 213 85 342 0 0 0 chr6 94403543 94403581 -94875973 + (CA)n Simple_repeat Simple_repeat 2 39 0 251 284 157 30 chr6 94404524 94404658 -94874896 - MIR3 SINE MIR -31 177 27 220 269 39 39 chr6 94405450 94405528 -94874026 - L2 LINE L2 -5 3308 3231 245 283 152 20 chr6 94405588 94405687 -94873867 + MIR SINE MIR 138 249 -13 2083 224 55 9 chr6 94405801 94406327 -94873227 + L1MC4a LINE L1 7257 7806 -2 1487 190 70 14 chr6 94406633 94407081 -94872473 + MLT1D LTR MaLR 1 505 0 212 372 55 18 chr6 94407120 94407338 -94872216 + L2 LINE L2 2596 2821 -493 207 0 0 0 chr6 94408745 94408768 -94870786 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 237 158 53 66 chr6 94409478 94409554 -94870000 - L1ME4a LINE L1 -102 6019 5945 363 272 22 11 chr6 94409953 94410045 -94869509 - MER81 DNA DNA -21 93 1 353 367 62 0 chr6 94410634 94410762 -94868792 - MIR3 SINE MIR -52 156 21 1603 218 30 53 chr6 94410854 94411321 -94868233 - LTR40c LTR ERVL -9 456 1 197 208 56 97 chr6 94411846 94411918 -94867636 - MIR SINE MIR -108 154 86 1338 194 92 74 chr6 94413036 94413495 -94866059 - MLT1C LTR MaLR 0 467 1 298 158 211 0 chr6 94413635 94413711 -94865843 + L2 LINE L2 3220 3311 -2 209 346 79 10 chr6 94414678 94414779 -94864775 - MIR SINE MIR -135 127 20 285 284 290 11 chr6 94415701 94415884 -94863670 + MIR SINE MIR 15 248 -14 2089 165 110 78 chr6 94416579 94416849 -94862705 + L1MC3 LINE L1 5311 5571 -2214 2120 72 0 0 chr6 94416849 94417114 -94862440 + AluY SINE Alu 35 299 -12 2089 165 110 78 chr6 94417114 94417486 -94862068 + L1MC3 LINE L1 5571 5974 -1811 2443 142 40 32 chr6 94417490 94417820 -94861734 + L1MC3 LINE L1 7070 7396 -389 2751 101 3 3 chr6 94417820 94418195 -94861359 - THE1C LTR MaLR 0 375 1 2443 142 40 32 chr6 94418195 94418304 -94861250 + L1MC3 LINE L1 7396 7516 -269 1773 131 71 29 chr6 94418304 94418654 -94860900 + MLT1A1 LTR MaLR 1 365 0 2443 142 40 32 chr6 94418654 94418686 -94860868 + L1MC3 LINE L1 7516 7546 -239 23 33 0 0 chr6 94419568 94419598 -94859956 + AT_rich Low_complexity Low_complexity 1 30 0 300 291 58 48 chr6 94420335 94420541 -94859013 + MIR SINE MIR 13 220 -42 2205 60 3 90 chr6 94420586 94420609 -94858945 - AluSg SINE Alu -7 303 280 285 29 0 0 chr6 94420609 94420643 -94858911 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2205 60 3 90 chr6 94420643 94420951 -94858603 - AluSg SINE Alu -30 280 1 1257 194 152 39 chr6 94420994 94421350 -94858204 + MSTD LTR MaLR 1 396 0 2242 74 0 7 chr6 94421741 94422072 -94857482 - AluY SINE Alu 0 311 1 252 149 58 23 chr6 94422383 94422495 -94857059 + (TA)n Simple_repeat Simple_repeat 1 123 -57 2032 152 0 0 chr6 94422495 94422784 -94856770 + AluSx SINE Alu 3 291 -21 252 149 58 23 chr6 94422784 94422845 -94856709 + (TA)n Simple_repeat Simple_repeat 123 180 0 49 60 0 0 chr6 94422856 94422940 -94856614 + AT_rich Low_complexity Low_complexity 1 84 0 420 201 0 22 chr6 94422942 94423126 -94856428 + (TA)n Simple_repeat Simple_repeat 1 180 0 229 142 35 35 chr6 94423152 94423265 -94856289 + (TA)n Simple_repeat Simple_repeat 2 114 0 499 268 88 26 chr6 94423403 94423743 -94855811 - L1ME4a LINE L1 -4 6117 5757 586 244 58 117 chr6 94423920 94424280 -94855274 - MER102b DNA MER1_type -1 340 2 530 346 78 78 chr6 94424970 94425406 -94854148 - L2 LINE L2 0 3272 2837 2286 123 21 21 chr6 94425715 94426088 -94853466 - THE1C LTR MaLR -2 373 1 22 35 0 0 chr6 94426260 94426289 -94853265 + AT_rich Low_complexity Low_complexity 1 29 0 215 244 0 0 chr6 94426931 94426976 -94852578 - MIR SINE MIR -67 195 151 1282 265 9 2 chr6 94427642 94428061 -94851493 + L1 LINE L1 2473 2894 -3252 * 1622 176 10 0 chr6 94428046 94428358 -94851196 + L1MB1 LINE L1 5573 5887 -302 669 58 0 0 chr6 94428359 94428446 -94851108 + L1P1 LINE L1 12 98 -6048 * 34498 41 42 2 chr6 94428415 94433223 -94846331 + L1P1 LINE L1 580 5589 -566 5810 168 13 19 chr6 94433323 94434511 -94845043 + L1 LINE L1 3777 4957 -1189 26947 42 38 2 chr6 94434611 94438176 -94841378 - L1P LINE L1 -2449 3697 5 217 386 89 5 chr6 94438596 94438798 -94840756 + L3 LINE CR1 282 500 -1077 249 319 18 18 chr6 94439124 94439237 -94840317 - MLT2E LTR ERVL -479 149 37 536 300 258 6 chr6 94440499 94440859 -94838695 + L3b LINE CR1 1121 1571 -12 437 243 155 0 chr6 94442740 94442888 -94836666 + MIR SINE MIR 92 262 0 1619 191 18 21 chr6 94443014 94443350 -94836204 - MER57A LTR ERV1 -1 402 68 22 35 0 0 chr6 94443608 94443637 -94835917 + AT_rich Low_complexity Low_complexity 1 29 0 438 197 17 8 chr6 94444176 94444293 -94835261 - L1MD3 LINE L1 -1 7994 7877 1069 186 5 14 chr6 94444328 94444549 -94835005 - L1MC4a LINE L1 -381 7361 7143 32962 89 7 59 chr6 94444558 94446013 -94833541 + L1PA6 LINE L1 11 1540 -4614 2435 93 0 0 chr6 94446013 94446324 -94833230 + AluY SINE Alu 1 311 0 32962 89 7 59 chr6 94446324 94446732 -94832822 + L1PA6 LINE L1 1540 1968 -4186 12798 39 2 2 chr6 94446732 94449068 -94830486 - L1PA4 LINE L1 0 6155 3818 32962 89 7 59 chr6 94449068 94453693 -94825861 + L1PA6 LINE L1 1968 6150 -4 3382 213 129 39 chr6 94453725 94455070 -94824484 - L1MC4a LINE L1 -586 7156 5691 915 258 42 57 chr6 94455077 94455388 -94824166 - L1MC4a LINE L1 -860 5220 4906 2232 106 3 0 chr6 94455388 94455689 -94823865 - AluSg SINE Alu -8 302 1 915 258 42 57 chr6 94455689 94455829 -94823725 - L1MC4a LINE L1 -1174 4906 4765 2035 136 6 0 chr6 94455829 94456153 -94823401 + L1PA14 LINE L1 5833 6158 -3 2065 127 7 0 chr6 94456163 94456463 -94823091 + AluSx SINE Alu 1 302 -10 915 258 42 57 chr6 94456463 94456560 -94822994 - L1MC4a LINE L1 -988 5092 4995 1043 91 8 0 chr6 94456573 94456705 -94822849 + AluSp SINE Alu 3 135 -178 1558 133 25 4 chr6 94456705 94456945 -94822609 + AluSp SINE Alu 1 245 -68 2002 157 0 13 chr6 94457162 94457475 -94822079 + AluSx SINE Alu 1 309 -3 336 388 27 0 chr6 94457627 94457851 -94821703 - L1MC4a LINE L1 -1442 4638 4409 354 268 57 41 chr6 94457966 94458089 -94821465 - L2 LINE L2 -8 3264 3140 489 264 71 50 chr6 94460432 94460919 -94818635 - L1ME LINE L1 -4960 1096 636 258 198 12 49 chr6 94462882 94462963 -94816591 + T-rich Low_complexity Low_complexity 1 78 0 266 222 0 0 chr6 94463629 94463692 -94815862 - MLT2D LTR ERVL -351 63 1 249 294 15 0 chr6 94463747 94463815 -94815739 + L2 LINE L2 3151 3219 -53 270 0 0 0 chr6 94464204 94464234 -94815320 + (CA)n Simple_repeat Simple_repeat 2 31 0 1869 63 4 0 chr6 94465095 94465347 -94814207 - L1PA10 LINE L1 -193 5975 5723 * 2957 71 0 2 chr6 94465340 94465736 -94813818 - L1PA10 LINE L1 -261 5907 5513 23 0 0 0 chr6 94465759 94465782 -94813772 + AT_rich Low_complexity Low_complexity 1 23 0 264 200 0 50 chr6 94465789 94465849 -94813705 + AluJ/FRAM SINE Alu 233 289 -13 827 219 13 0 chr6 94466688 94466839 -94812715 - FRAM SINE Alu -30 146 1 1524 171 15 25 chr6 94467472 94467595 -94811959 + AluJb SINE Alu 9 132 -180 288 0 0 0 chr6 94467595 94467627 -94811927 + (TA)n Simple_repeat Simple_repeat 1 32 0 1524 171 15 25 chr6 94467627 94467777 -94811777 + AluJb SINE Alu 132 279 -33 228 67 0 0 chr6 94467777 94467807 -94811747 + (CA)n Simple_repeat Simple_repeat 1 30 0 546 176 20 0 chr6 94467825 94467927 -94811627 + L1M4 LINE L1 4491 4594 -1552 1131 196 9 5 chr6 94567930 94568149 -94711405 + MLT1C LTR MaLR 248 467 0 1724 172 0 20 chr6 94568486 94568783 -94710771 - AluJb SINE Alu -14 298 8 2157 180 17 105 chr6 94568874 94569090 -94710464 + MLT1D LTR MaLR 1 234 -271 1845 137 13 36 chr6 94569090 94569396 -94710158 + AluJo SINE Alu 1 299 -13 2157 180 17 105 chr6 94569396 94569422 -94710132 + MLT1D LTR MaLR 234 261 -244 1846 137 68 7 chr6 94569422 94569715 -94709839 + AluJo SINE Alu 1 311 -1 2157 180 17 105 chr6 94569715 94570003 -94709551 + MLT1D LTR MaLR 261 499 -6 1807 163 17 7 chr6 94570716 94571016 -94708538 - AluJb SINE Alu -8 304 2 266 139 0 0 chr6 94571552 94571588 -94707966 + Alu SINE Alu 1 36 -264 890 186 0 0 chr6 94571591 94571731 -94707823 + AluJb SINE Alu 154 293 -19 304 350 45 45 chr6 94571915 94572138 -94707416 - L2 LINE L2 -93 3179 2957 286 287 129 48 chr6 94572206 94572415 -94707139 - L2 LINE L2 -527 2787 2562 30 45 0 0 chr6 94572477 94572521 -94707033 + AT_rich Low_complexity Low_complexity 1 44 0 183 323 62 0 chr6 94574514 94574579 -94704975 - L2 LINE L2 -48 3265 3197 2139 110 41 0 chr6 94574906 94575225 -94704329 - L1PB1 LINE L1 -3 6148 5817 386 206 10 31 chr6 94575225 94575322 -94704232 + L1PB1 LINE L1 5804 5898 -253 247 83 0 0 chr6 94575301 94575337 -94704217 + L1P5 LINE L1 5798 5833 -318 * 2726 89 18 8 chr6 94575336 94575731 -94703823 - L1P5 LINE L1 -357 5794 5396 1902 153 3 10 chr6 94575755 94576056 -94703498 + AluSx SINE Alu 1 299 -13 3843 133 44 27 chr6 94576248 94576908 -94702646 - LTR51 LTR ERV1 0 671 1 2500 160 74 36 chr6 94577356 94577856 -94701698 - MLT2B1 LTR ERVL -1 519 1 14623 119 31 31 chr6 94577861 94578058 -94701496 - Tigger1 DNA MER2_type -1 2417 2222 2156 116 3 22 chr6 94578058 94578377 -94701177 + AluSq SINE Alu 1 313 0 14623 119 31 31 chr6 94578377 94578546 -94701008 - Tigger1 DNA MER2_type -196 2222 2055 188 0 74 0 chr6 94578546 94578573 -94700981 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1659 191 0 11 chr6 94578575 94578858 -94700696 - AluJo SINE Alu -32 280 1 14623 119 31 31 chr6 94578858 94580717 -94698837 - Tigger1 DNA MER2_type -363 2055 184 1927 160 0 3 chr6 94580717 94581011 -94698543 + AluJb SINE Alu 1 293 -19 14623 119 31 31 chr6 94581011 94581194 -94698360 - Tigger1 DNA MER2_type -2234 184 3 356 345 135 14 chr6 94582483 94582515 -94697039 + L2 LINE L2 2818 2845 -468 1267 244 77 50 chr6 94582515 94583020 -94696534 - MLT2B1 LTR ERVL 0 520 2 356 345 135 14 chr6 94583020 94583358 -94696196 + L2 LINE L2 2845 3233 -80 1278 184 0 18 chr6 94583445 94583614 -94695940 - AluJb SINE Alu -10 302 136 2222 101 3 10 chr6 94583614 94583920 -94695634 - AluSg SINE Alu -6 304 1 1278 184 0 18 chr6 94583920 94583973 -94695581 - AluJb SINE Alu -176 136 84 257 245 133 10 chr6 94583997 94584095 -94695459 - MIR SINE MIR -100 162 53 180 0 0 0 chr6 94584447 94584467 -94695087 + (GA)n Simple_repeat Simple_repeat 1 20 0 369 0 0 0 chr6 94584473 94584514 -94695040 + (TG)n Simple_repeat Simple_repeat 1 41 0 373 283 38 47 chr6 94585361 94585573 -94693981 - L2 LINE L2 0 3313 3104 419 301 80 0 chr6 94586503 94586679 -94692875 + MIR SINE MIR 2 191 -71 1447 145 9 5 chr6 94586692 94586913 -94692641 + AluSx SINE Alu 1 222 -90 27 0 0 0 chr6 94587972 94587999 -94691555 + AT_rich Low_complexity Low_complexity 1 27 0 44 20 0 0 chr6 94588309 94588360 -94691194 + AT_rich Low_complexity Low_complexity 1 51 0 1393 153 138 11 chr6 94588378 94588646 -94690908 + AluJo SINE Alu 11 312 0 630 206 125 76 chr6 94588687 94589056 -94690498 - L1MC5 LINE L1 -172 7789 7403 257 135 39 0 chr6 94589059 94589111 -94690443 + MER5C DNA MER1_type 71 124 -200 21 36 0 0 chr6 94590159 94590187 -94689367 + AT_rich Low_complexity Low_complexity 1 28 0 6648 124 42 17 chr6 94590267 94592124 -94687430 - L1MA1 LINE L1 0 6302 4392 2041 91 0 4 chr6 94592124 94592389 -94687165 - AluSg SINE Alu -7 303 40 6648 124 42 17 chr6 94592389 94592560 -94686994 - L1MA1 LINE L1 -1910 4392 4227 242 170 170 30 chr6 94592736 94592871 -94686683 + MER5C DNA MER1_type 127 280 -44 825 213 20 126 chr6 94592887 94593244 -94686310 - L1MC5 LINE L1 -560 7401 7083 961 279 75 40 chr6 94594052 94594454 -94685100 - HERVL LTR ERVL -3471 2183 1768 1068 304 63 20 chr6 94594585 94595076 -94684478 - HERVL LTR ERVL -3503 1493 982 2256 103 3 13 chr6 94595172 94595484 -94684070 + AluY SINE Alu 3 311 0 2631 58 0 0 chr6 94595668 94595978 -94683576 + AluY SINE Alu 1 310 -1 332 250 34 23 chr6 94595985 94596073 -94683481 - HERVL LTR ERVL -4361 635 547 238 378 39 39 chr6 94596479 94596553 -94683001 - MIR SINE MIR 0 262 189 2157 100 3 10 chr6 94596553 94596842 -94682712 - AluY SINE Alu -24 287 1 238 378 39 39 chr6 94596842 94597000 -94682554 - MIR SINE MIR -72 190 30 219 69 0 0 chr6 94597187 94597216 -94682338 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 2014 126 4 0 chr6 94597216 94597486 -94682068 - AluSx SINE Alu -28 284 14 957 200 6 0 chr6 94597696 94597861 -94681693 - AluJb SINE Alu -10 302 137 358 314 77 0 chr6 94598553 94598709 -94680845 - MIR SINE MIR -15 247 80 3144 134 40 6 chr6 94598776 94599326 -94680228 - L1MB7 LINE L1 -19 6165 5597 1458 201 59 86 chr6 94599604 94599661 -94679893 + MSTD LTR MaLR 1 58 -338 2043 150 0 10 chr6 94599661 94599968 -94679586 + AluJb SINE Alu 1 304 -8 1458 201 59 86 chr6 94599968 94600317 -94679237 + MSTD LTR MaLR 58 396 0 1136 166 4 85 chr6 94600578 94600813 -94678741 + AluJo SINE Alu 48 263 -49 207 0 0 0 chr6 94600830 94600853 -94678701 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1709 247 68 30 chr6 94600857 94601387 -94678167 + L1ME3A LINE L1 5593 6142 -28 2104 107 40 0 chr6 94601410 94601708 -94677846 + AluSx SINE Alu 1 310 -2 429 267 5 89 chr6 94603378 94603569 -94675985 - MIR SINE MIR -8 254 80 994 233 238 32 chr6 94604858 94605270 -94674284 - MLT1D LTR MaLR -8 497 1 186 308 55 0 chr6 94605410 94605501 -94674053 - L2 LINE L2 -38 3234 3139 223 149 37 37 chr6 94605738 94605845 -94673709 + CT-rich Low_complexity Low_complexity 1 107 0 400 290 103 7 chr6 94606118 94606263 -94673291 - MIR SINE MIR -70 192 34 180 303 71 59 chr6 94606439 94606677 -94672877 - L2 LINE L2 -438 2876 2636 241 270 108 0 chr6 94607351 94607425 -94672129 - L2 LINE L2 -680 2634 2553 835 260 92 0 chr6 94607476 94607703 -94671851 - MIR SINE MIR -14 248 1 4302 151 31 32 chr6 94608313 94608350 -94671204 + L1MC2 LINE L1 5537 5573 -771 3574 148 6 8 chr6 94608350 94608878 -94670676 + MER1A DNA MER1_type 1 527 0 4302 151 31 32 chr6 94608878 94609639 -94669915 + L1MC2 LINE L1 5573 6334 -10 186 283 84 80 chr6 94609873 94610124 -94669430 + L2 LINE L2 2807 3058 -214 320 290 105 0 chr6 94610727 94610851 -94668703 - L2 LINE L2 -2 3270 3134 884 186 72 93 chr6 94610886 94611176 -94668378 - MLT1B LTR MaLR -7 383 100 2110 118 7 7 chr6 94611303 94611609 -94667945 + AluSq SINE Alu 1 306 -7 241 309 24 0 chr6 94618504 94618588 -94660966 - MIR SINE MIR -149 113 28 446 306 113 11 chr6 94618905 94619091 -94660463 + MIR SINE MIR 21 225 -37 346 205 12 0 chr6 94619134 94619217 -94660337 - L1MB8 LINE L1 -6 6172 6089 1113 248 38 31 chr6 94619224 94619543 -94660011 + MLT1A2 LTR MaLR 1 321 -53 1813 128 64 3 chr6 94619628 94619910 -94659644 - AluSq SINE Alu -14 299 1 3169 155 40 4 chr6 94619916 94620470 -94659084 - L1MB7 LINE L1 -148 6036 5463 414 189 112 71 chr6 94620486 94620682 -94658872 - HAL1 LINE L1 -2 2505 2302 351 65 0 0 chr6 94620738 94620784 -94658770 + (TG)n Simple_repeat Simple_repeat 2 47 0 1518 168 78 0 chr6 94620788 94621056 -94658498 - AluJo SINE Alu -23 289 1 5101 177 38 6 chr6 94621076 94621744 -94657810 - L1MB3 LINE L1 -1 6182 5537 2029 84 0 11 chr6 94621744 94622017 -94657537 - AluY SINE Alu -9 302 33 5101 177 38 6 chr6 94622017 94622309 -94657245 - L1MB3 LINE L1 -646 5537 5256 5266 138 40 11 chr6 94622309 94623193 -94656361 - L1MC1 LINE L1 -17 6316 5408 5101 177 38 6 chr6 94623193 94623651 -94655903 - L1MB3 LINE L1 -927 5256 4710 1087 124 0 13 chr6 94623653 94623826 -94655728 - AluJb SINE Alu 0 303 133 1321 248 159 46 chr6 94623850 94624484 -94655070 - HAL1 LINE L1 -297 2210 1505 929 232 9 27 chr6 94624858 94625078 -94654476 - MER20 DNA MER1_type 0 219 4 646 261 106 0 chr6 94625300 94625499 -94654055 - MIR SINE MIR -21 241 22 3871 106 49 18 chr6 94625503 94626133 -94653421 - MER39B LTR ERV1 -3 650 1 211 314 128 0 chr6 94626416 94626518 -94653036 - MIR SINE MIR -77 131 17 2494 73 3 0 chr6 94626745 94627045 -94652509 - AluY SINE Alu -10 301 1 186 200 57 71 chr6 94627282 94627352 -94652202 - L2 LINE L2 -68 3204 3136 607 205 82 8 chr6 94627627 94627749 -94651805 - FLAM_A SINE Alu -2 131 1 1436 149 5 0 chr6 94628317 94628532 -94651022 + AluJo SINE Alu 87 302 -10 2145 149 0 0 chr6 94628982 94629291 -94650263 - AluSx SINE Alu -3 309 1 291 340 60 11 chr6 94629375 94629560 -94649994 - MIR SINE MIR -10 252 59 713 275 60 9 chr6 94629790 94630023 -94649531 + MIR SINE MIR 2 246 -16 2092 121 48 0 chr6 94630184 94630474 -94649080 + AluSx SINE Alu 1 304 -8 606 168 56 24 chr6 94630529 94630654 -94648900 + L1ME1 LINE L1 4616 4744 -1402 * 1044 203 64 16 chr6 94630647 94630898 -94648656 + L1ME1 LINE L1 5899 6161 -5 187 180 0 60 chr6 94630925 94630975 -94648579 - MIR SINE MIR -57 151 105 789 304 28 0 chr6 94631878 94632132 -94647422 - L1MC/D LINE L1 -590 5584 5518 547 146 10 0 chr6 94632779 94632882 -94646672 - LTR37A LTR ERV1 -34 392 289 1376 172 0 5 chr6 94632965 94633186 -94646368 - AluJo SINE Alu -92 220 1 1129 148 7 19 chr6 94633186 94633413 -94646141 - L1MB3 LINE L1 -40 6143 5926 610 242 32 21 chr6 94633442 94633632 -94645922 + MIR SINE MIR 71 262 0 537 223 39 0 chr6 94633685 94633815 -94645739 - MER5B DNA MER1_type 0 178 44 1511 221 72 8 chr6 94635330 94635429 -94644125 + L1M4 LINE L1 3760 3851 -2295 1840 167 58 19 chr6 94635429 94635789 -94643765 - MLT1A2 LTR MaLR 0 374 1 1511 221 72 8 chr6 94635789 94636064 -94643490 + L1M4 LINE L1 3851 4158 -1988 787 135 0 8 chr6 94636084 94636210 -94643344 + L1MB4 LINE L1 6049 6173 -7 2187 113 14 0 chr6 94636322 94636613 -94642941 + AluSx SINE Alu 1 295 -17 426 287 165 23 chr6 94636616 94636968 -94642586 + L1M4 LINE L1 3520 3921 -2225 2205 118 7 0 chr6 94637102 94637399 -94642155 + AluSg SINE Alu 1 299 -11 2205 126 0 7 chr6 94637602 94637904 -94641650 + AluSx SINE Alu 1 300 -12 2286 101 0 0 chr6 94637904 94638200 -94641354 + AluSc SINE Alu 1 296 -13 283 309 86 12 chr6 94638321 94638483 -94641071 - L3 LINE CR1 -706 871 698 2277 81 44 7 chr6 94639419 94639714 -94639840 + AluSx SINE Alu 1 306 -6 327 239 60 17 chr6 94641038 94641155 -94638399 + MER5B DNA MER1_type 3 124 -54 626 238 55 66 chr6 94641401 94641657 -94637897 + MIR SINE MIR 2 254 -8 1848 155 13 10 chr6 94641792 94642096 -94637458 - AluJb SINE Alu -7 305 1 247 277 77 31 chr6 94643050 94643180 -94636374 - MIR SINE MIR -79 183 48 510 258 23 23 chr6 94643319 94643451 -94636103 - MLT1A2 LTR MaLR 0 374 234 1969 105 52 0 chr6 94643503 94643770 -94635784 + AluSg SINE Alu 2 282 -28 2081 133 3 7 chr6 94644865 94645167 -94634387 + AluJb SINE Alu 1 301 -11 1826 181 0 29 chr6 94645435 94645745 -94633809 - AluJo SINE Alu -10 302 2 1504 124 10 5 chr6 94645776 94645985 -94633569 + AluSx SINE Alu 1 210 -102 506 202 10 0 chr6 94646039 94646143 -94633411 + AluSx SINE Alu 198 302 -7 183 174 0 43 chr6 94649752 94649787 -94629767 + L2 LINE L2 3267 3301 -12 1812 168 0 3 chr6 94649787 94650072 -94629482 + AluJb SINE Alu 3 286 -26 397 130 7 3 chr6 94650209 94650283 -94629271 - Alu SINE Alu -247 56 1 1135 146 222 42 chr6 94650459 94650734 -94628820 - AluSx SINE Alu 0 318 1 2050 86 23 36 chr6 94651446 94651749 -94627805 - AluSp SINE Alu -14 299 1 365 239 46 9 chr6 94652967 94653076 -94626478 - LTR1B LTR ERV1 -681 145 33 1150 189 66 9 chr6 94653082 94653310 -94626244 - AluJo SINE Alu -71 241 1 1064 166 76 52 chr6 94653352 94653574 -94625980 - MER33 DNA MER1_type -2289 296 64 2329 80 7 10 chr6 94653574 94653873 -94625681 - AluY SINE Alu -13 298 1 1064 166 76 52 chr6 94653873 94653939 -94625615 - MER33 DNA MER1_type -2521 64 1 988 320 55 16 chr6 94653945 94654491 -94625063 + L2 LINE L2 2158 2724 -590 2466 97 0 0 chr6 94654543 94654852 -94624702 + AluSx SINE Alu 1 309 -3 1763 152 0 4 chr6 94654861 94655124 -94624430 + AluSx SINE Alu 49 310 -2 261 324 27 45 chr6 94655321 94655432 -94624122 - MIR SINE MIR -58 150 42 2296 91 31 0 chr6 94655483 94655770 -94623784 + AluSx SINE Alu 2 297 -15 2349 74 10 13 chr6 94656073 94656383 -94623171 - AluSg SINE Alu -1 309 1 1988 122 7 18 chr6 94659657 94659974 -94619580 + AluSx SINE Alu 1 314 0 208 278 0 0 chr6 94660208 94660262 -94619292 - L2 LINE L2 -5 3308 3255 290 254 114 46 chr6 94660403 94660533 -94619021 - MIR SINE MIR -55 153 15 1983 112 53 7 chr6 94660537 94660822 -94618732 - AluSx SINE Alu -14 298 1 237 158 0 0 chr6 94661461 94661499 -94618055 + Alu SINE Alu 129 166 -137 * 267 167 0 0 chr6 94661496 94661538 -94618016 + FLAM SINE Alu 79 120 -13 2231 129 0 3 chr6 94661781 94662090 -94617464 + AluSq SINE Alu 1 308 -5 885 200 42 0 chr6 94662359 94662524 -94617030 + FAM SINE Alu 1 172 -3 2499 58 7 0 chr6 94663046 94663338 -94616216 - AluSg SINE Alu -16 294 1 401 136 0 0 chr6 94663339 94663398 -94616156 - Alu SINE Alu -15 297 239 456 227 147 98 chr6 94663399 94663787 -94615767 - LTR1B LTR ERV1 0 826 420 616 154 19 0 chr6 94663887 94663991 -94615563 + AluSg/x SINE Alu 195 300 -10 2285 132 17 13 chr6 94665082 94665485 -94614069 + MER65A LTR ERV1 1 445 0 555 276 89 36 chr6 94665485 94665783 -94613771 - L2 LINE L2 -1155 2159 1840 2272 102 3 0 chr6 94665783 94666077 -94613477 + AluSg SINE Alu 1 295 -15 555 276 89 36 chr6 94666077 94666115 -94613439 - L2 LINE L2 -1474 1840 1805 255 323 92 27 chr6 94666116 94666326 -94613228 + L2 LINE L2 2997 3233 -80 1744 171 23 16 chr6 94666326 94666636 -94612918 - AluJb SINE Alu 0 312 1 255 323 92 27 chr6 94666636 94666719 -94612835 + L2 LINE L2 3233 3309 -4 381 298 32 0 chr6 94666748 94666872 -94612682 - MIR SINE MIR -45 163 32 555 76 63 0 chr6 94666937 94667016 -94612538 + AluSp/q SINE Alu 216 299 -14 2273 63 0 0 chr6 94667017 94667288 -94612266 + AluY SINE Alu 2 272 -39 482 132 13 0 chr6 94667389 94667465 -94612089 - AluSg/x SINE Alu -98 212 136 1469 145 35 62 chr6 94667542 94667831 -94611723 + AluJo SINE Alu 27 307 -5 1229 69 0 0 chr6 94668181 94668325 -94611229 - AluSg/x SINE Alu -14 296 153 2167 91 35 3 chr6 94668332 94668377 -94611177 - AluSx SINE Alu -17 295 253 180 0 0 0 chr6 94668377 94668397 -94611157 + (CAGTG)n Simple_repeat Simple_repeat 5 24 0 2167 91 35 3 chr6 94668397 94668637 -94610917 - AluSx SINE Alu -59 253 1 435 374 102 17 chr6 94668692 94669214 -94610340 - L2 LINE L2 -834 2480 1915 1527 121 81 102 chr6 94669302 94669355 -94610199 + MER65A LTR ERV1 1 54 -391 1780 176 17 0 chr6 94669355 94669645 -94609909 + AluJb SINE Alu 1 295 -17 1527 121 81 102 chr6 94669645 94669923 -94609631 + MER65A LTR ERV1 54 325 -120 1616 106 5 5 chr6 94669924 94670141 -94609413 + AluSq SINE Alu 1 217 -96 2074 158 0 0 chr6 94671080 94671391 -94608163 - AluSx SINE Alu -1 311 1 906 220 65 12 chr6 94671561 94671806 -94607748 + L2 LINE L2 2424 2681 -633 415 217 7 94 chr6 94671882 94672020 -94607534 + MER115 DNA AcHobo 109 234 -459 2330 106 0 0 chr6 94672363 94672665 -94606889 - AluSg SINE Alu -8 302 1 319 302 233 5 chr6 94673189 94673378 -94606176 + MIR SINE MIR 5 236 -26 32 0 0 0 chr6 94673410 94673442 -94606112 + AT_rich Low_complexity Low_complexity 1 32 0 2551 66 0 3 chr6 94674270 94674574 -94604980 - AluY SINE Alu -8 303 1 2168 107 7 3 chr6 94675391 94675691 -94603863 - AluSq SINE Alu -12 301 1 21 0 0 0 chr6 94675920 94675941 -94603613 + AT_rich Low_complexity Low_complexity 1 21 0 2275 81 11 3 chr6 94676046 94676330 -94603224 + AluSg SINE Alu 1 286 -24 1435 191 40 27 chr6 94676350 94676649 -94602905 + AluJb SINE Alu 1 303 -9 2011 157 0 3 chr6 94676923 94677229 -94602325 - AluJb SINE Alu -7 305 1 2158 92 54 3 chr6 94677532 94677827 -94601727 + AluSx SINE Alu 1 310 -2 2392 80 7 3 chr6 94677856 94678157 -94601397 + AluY SINE Alu 1 302 -9 2343 95 0 19 chr6 94678168 94678483 -94601071 + AluSx SINE Alu 2 310 -2 305 140 0 0 chr6 94678503 94678553 -94601001 + FLAM_A SINE Alu 84 133 0 327 250 23 34 chr6 94678579 94678667 -94600887 + AluJo SINE Alu 94 180 -122 250 338 56 46 chr6 94679007 94679312 -94600242 - HAL1 LINE L1 -2141 366 59 244 231 0 0 chr6 94679317 94679369 -94600185 + LTR30 LTR ERV1 1 52 -670 763 133 82 169 chr6 94679369 94679624 -94599930 + LTR12 LTR ERV1 53 285 -429 313 221 0 0 chr6 94679625 94679693 -94599861 + LTR30 LTR ERV1 553 620 -102 756 157 25 0 chr6 94679693 94679814 -94599740 + LTR12 LTR ERV1 355 478 -236 7407 127 12 34 chr6 94679836 94681198 -94598356 + HERV9 LTR ERV1 54 1464 -6935 2408 135 0 0 chr6 94681195 94681542 -94598012 + HERV9 LTR ERV1 2694 3040 -5217 * 32730 92 7 7 chr6 94681533 94685917 -94593637 + HERV9 LTR ERV1 1462 5848 -2551 1701 52 9 0 chr6 94686018 94686228 -94593326 + AluY SINE Alu 94 305 -6 2087 136 0 10 chr6 94686543 94686865 -94592689 + AluSx SINE Alu 1 312 0 2051 144 0 0 chr6 94686902 94687207 -94592347 + AluSx SINE Alu 1 305 -7 611 162 120 17 chr6 94687228 94687345 -94592209 - FLAM_C SINE Alu 0 133 5 1131 156 73 5 chr6 94687413 94687618 -94591936 - MER20 DNA MER1_type 0 219 1 2469 68 3 3 chr6 94687722 94688032 -94591522 + AluY SINE Alu 1 310 -1 1409 93 13 26 chr6 94688062 94688288 -94591266 + HSMAR1 DNA Mariner 9 231 -1056 2369 98 0 0 chr6 94688413 94688710 -94590844 - AluSq SINE Alu -16 297 1 2277 111 0 0 chr6 94689035 94689324 -94590230 + AluSq SINE Alu 1 289 -24 1816 145 15 0 chr6 94689475 94689737 -94589817 + AluJb SINE Alu 1 266 -46 22 0 0 0 chr6 94690140 94690162 -94589392 + AT_rich Low_complexity Low_complexity 1 22 0 2425 71 3 10 chr6 94691791 94692100 -94587454 - AluSq SINE Alu -6 307 1 21 0 0 0 chr6 94693172 94693193 -94586361 + GC_rich Low_complexity Low_complexity 1 21 0 191 242 81 16 chr6 94696268 94696330 -94583224 - L2 LINE L2 0 3272 3207 265 313 31 16 chr6 94697290 94697418 -94582136 - L1M4 LINE L1 -1258 4888 4759 1330 87 0 17 chr6 94698276 94698448 -94581106 + AluSp SINE Alu 130 298 -15 581 169 93 0 chr6 94698449 94698567 -94580987 - L1MC4 LINE L1 0 8042 7914 1043 162 5 26 chr6 94698686 94698877 -94580677 - AluJo SINE Alu -6 306 120 576 243 45 25 chr6 94698901 94699103 -94580451 - L1MC4 LINE L1 -564 7478 7273 568 193 0 18 chr6 94699157 94699271 -94580283 - FLAM_A SINE Alu -6 136 25 282 236 28 0 chr6 94699519 94699591 -94579963 - L1MC4 LINE L1 -548 7494 7421 1862 129 8 63 chr6 94699750 94700114 -94579440 - HERVK22 LTR ERVK -6491 346 3 2184 167 68 25 chr6 94700201 94700673 -94578881 - LTR22B LTR ERVK 0 492 1 820 144 0 8 chr6 94700707 94700832 -94578722 + FLAM_C SINE Alu 1 124 -19 722 174 22 12 chr6 94700862 94700998 -94578556 - LTR12 LTR ERV1 -234 480 296 310 221 0 0 chr6 94701004 94701072 -94578482 - LTR30 LTR ERV1 -102 620 553 729 147 76 119 chr6 94701073 94701329 -94578225 - LTR12 LTR ERV1 -429 1983 48 2378 82 7 3 chr6 94701331 94701634 -94577920 + AluSx SINE Alu 1 304 -8 247 163 0 0 chr6 94701652 94701695 -94577859 - LTR30 LTR ERV1 -679 43 1 1635 113 4 0 chr6 94701699 94701930 -94577624 - HERV9 LTR ERV1 -4 8395 8164 201 39 0 0 chr6 94702074 94702100 -94577454 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1549 201 39 6 chr6 94702179 94702512 -94577042 - L1MC1 LINE L1 -14 6319 5976 3168 152 62 27 chr6 94702569 94702606 -94576948 - L1MB3 LINE L1 -15 6168 6134 2318 112 0 0 chr6 94702606 94702918 -94576636 - AluSx SINE Alu 0 312 1 3168 152 62 27 chr6 94702918 94703543 -94576011 - L1MB3 LINE L1 -49 6134 5483 300 79 101 0 chr6 94703552 94703627 -94575927 - L1MB3 LINE L1 -791 5377 5297 2336 71 0 20 chr6 94703641 94703936 -94575618 + AluY SINE Alu 1 289 -22 656 162 0 18 chr6 94703947 94704058 -94575496 - FLAM_C SINE Alu -24 119 11 6532 198 63 31 chr6 94704066 94704526 -94575028 - L1 LINE L1 -815 5331 4887 1611 199 0 7 chr6 94704526 94704827 -94574727 + AluJo SINE Alu 1 299 -13 6532 198 63 31 chr6 94704827 94704919 -94574635 - L1 LINE L1 -1259 4887 4799 1488 204 6 22 chr6 94704919 94705232 -94574322 - AluJo SINE Alu -1 311 4 6532 198 63 31 chr6 94705232 94705490 -94574064 - L1 LINE L1 -1347 4799 4551 1697 138 93 34 chr6 94705490 94705844 -94573710 - THE1C LTR MaLR 0 375 1 6532 198 63 31 chr6 94705844 94706804 -94572750 - L1 LINE L1 -1595 4551 3503 1790 134 16 59 chr6 94706804 94707125 -94572429 - AluJo SINE Alu -5 307 1 598 93 0 37 chr6 94707125 94707233 -94572321 - L1M4c LINE L1 -4371 2013 1910 2322 98 3 0 chr6 94707233 94707530 -94572024 + AluSc SINE Alu 1 298 -11 801 126 7 15 chr6 94707761 94707896 -94571658 - L1MB3 LINE L1 -2 6181 6048 961 141 73 17 chr6 94709462 94709639 -94569915 - AluJo SINE Alu -6 306 120 1631 164 3 57 chr6 94709845 94710143 -94569411 + AluJo SINE Alu 1 282 -30 2427 88 0 7 chr6 94710186 94710493 -94569061 + AluSq SINE Alu 1 305 -8 764 144 59 20 chr6 94710668 94710821 -94568733 - L1ME3A LINE L1 -4 6166 6008 2069 123 25 0 chr6 94711246 94711531 -94568023 + AluSx SINE Alu 1 292 -20 995 208 0 24 chr6 94711844 94712051 -94567503 + MER105 DNA DNA 2 203 -1 236 286 33 22 chr6 94712612 94712703 -94566851 + L1ME4a LINE L1 5513 5604 -517 2052 114 4 0 chr6 94712715 94712987 -94566567 + AluSx SINE Alu 1 273 -39 2014 149 3 3 chr6 94713029 94713325 -94566229 + AluSx SINE Alu 1 296 -16 339 238 251 41 chr6 94713407 94713794 -94565760 + L1ME4a LINE L1 5653 6120 -1 2058 115 28 3 chr6 94713797 94714084 -94565470 - AluSg SINE Alu -12 298 5 288 0 0 0 chr6 94714372 94714404 -94565150 + (CA)n Simple_repeat Simple_repeat 2 33 0 393 22 0 0 chr6 94714404 94714450 -94565104 + (TA)n Simple_repeat Simple_repeat 1 46 0 2455 84 0 0 chr6 94715364 94715663 -94563891 - AluSq SINE Alu -14 299 1 1972 118 33 0 chr6 94715675 94715970 -94563584 - AluSc SINE Alu 0 304 1 1633 188 64 6 chr6 94716223 94716553 -94563001 - L1ME1 LINE L1 -57 6109 5761 268 151 19 0 chr6 94716786 94716839 -94562715 - MER5B DNA MER1_type 0 178 125 219 154 0 0 chr6 94716842 94716881 -94562673 + A-rich Low_complexity Low_complexity 1 39 0 455 205 0 0 chr6 94716896 94716974 -94562580 + MER81 DNA DNA 1 78 -36 338 195 9 71 chr6 94716983 94717096 -94562458 + MER5B DNA MER1_type 70 175 -3 1762 127 21 103 chr6 94720291 94720424 -94559130 + AluJo SINE Alu 1 143 -169 2073 132 0 30 chr6 94720424 94720727 -94558827 + AluSx SINE Alu 1 294 -18 1762 127 21 103 chr6 94720727 94720933 -94558621 + AluJo SINE Alu 143 312 0 468 278 66 7 chr6 94721280 94721431 -94558123 + MER5B DNA MER1_type 3 162 -16 258 277 24 0 chr6 94721507 94721590 -94557964 + MER5B DNA MER1_type 1 85 -93 313 215 8 85 chr6 94721693 94721823 -94557731 - L1M4 LINE L1 -1112 5034 4915 1577 170 87 7 chr6 94721879 94722155 -94557399 + AluJb SINE Alu 1 298 -14 338 200 14 0 chr6 94722409 94722479 -94557075 - MIR SINE MIR -119 143 73 1650 178 0 14 chr6 94722853 94723139 -94556415 - AluJb SINE Alu -30 282 1 266 143 12 119 chr6 94723195 94723224 -94556330 - MER116 DNA Mariner -2 78 48 1941 137 3 42 chr6 94723224 94723537 -94556017 + AluSx SINE Alu 1 301 -11 266 143 12 119 chr6 94723537 94723591 -94555963 - MER116 DNA Mariner -32 48 4 763 174 0 0 chr6 94723652 94723773 -94555781 - FLAM_A SINE Alu -11 122 2 231 36 0 0 chr6 94723973 94724001 -94555553 + (GAA)n Simple_repeat Simple_repeat 2 29 0 1238 129 0 0 chr6 94724056 94724227 -94555327 + AluSg/x SINE Alu 137 307 -5 21 0 0 0 chr6 94725136 94725157 -94554397 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 94725211 94725232 -94554322 + AT_rich Low_complexity Low_complexity 1 21 0 289 371 41 3 chr6 94725861 94726015 -94553539 - MIR SINE MIR -28 180 19 261 195 98 24 chr6 94726057 94726139 -94553415 + L3 LINE CR1 670 757 -820 29 70 0 0 chr6 94726190 94726247 -94553307 + AT_rich Low_complexity Low_complexity 1 57 0 2307 98 3 0 chr6 94727226 94727521 -94552033 - AluSp SINE Alu -17 296 1 730 245 151 0 chr6 94727664 94727856 -94551698 + MIR SINE MIR 18 238 -24 28 48 0 0 chr6 94728290 94728332 -94551222 + AT_rich Low_complexity Low_complexity 1 42 0 400 272 46 51 chr6 94728464 94728733 -94550821 - L1MC4a LINE L1 -254 5930 5653 2244 104 0 43 chr6 94728943 94729269 -94550285 + AluSx SINE Alu 1 312 0 247 208 64 88 chr6 94729913 94730038 -94549516 - L1ME4a LINE L1 -34 6087 5966 2475 77 0 0 chr6 94730225 94730535 -94549019 - AluY SINE Alu -1 310 1 279 0 0 0 chr6 94730724 94730755 -94548799 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 21 57 0 0 chr6 94730796 94730831 -94548723 + AT_rich Low_complexity Low_complexity 1 35 0 969 145 0 0 chr6 94730923 94731061 -94548493 - FLAM_C SINE Alu -3 140 3 204 40 0 0 chr6 94731080 94731105 -94548449 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 2034 119 13 3 chr6 94731681 94731983 -94547571 + AluSx SINE Alu 1 305 -7 300 158 0 0 chr6 94732046 94732103 -94547451 + (TA)n Simple_repeat Simple_repeat 2 58 0 180 200 0 44 chr6 94733125 94733170 -94546384 - L2 LINE L2 -98 3215 3173 1495 181 23 29 chr6 94733373 94733682 -94545872 - AluSx SINE Alu -5 307 1 301 135 0 19 chr6 94733682 94733734 -94545820 - AluJo SINE Alu -167 135 85 393 314 32 16 chr6 94733739 94733863 -94545691 - MIR SINE MIR -65 143 18 710 311 64 0 chr6 94733981 94734216 -94545338 + MIR SINE MIR 13 262 0 2113 153 0 0 chr6 94734361 94734669 -94544885 + AluJo SINE Alu 1 308 -4 3362 157 15 62 chr6 94734766 94734994 -94544560 + L1MB7 LINE L1 5451 5688 -496 2276 102 3 3 chr6 94734994 94735299 -94544255 - AluSp SINE Alu -8 305 1 3362 157 15 62 chr6 94735299 94735454 -94544100 + L1MB7 LINE L1 5688 5849 -335 1732 186 3 7 chr6 94735454 94735749 -94543805 + AluJo SINE Alu 1 294 -18 3362 157 15 62 chr6 94735749 94735858 -94543696 + L1MB7 LINE L1 5849 5962 -222 2425 93 3 0 chr6 94735858 94736168 -94543386 - AluSx SINE Alu 0 312 2 3362 157 15 62 chr6 94736168 94736393 -94543161 + L1MB7 LINE L1 5962 6136 -48 1249 167 108 66 chr6 94736401 94736689 -94542865 + AluJo SINE Alu 4 303 -9 207 0 0 0 chr6 94736712 94736735 -94542819 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1803 71 4 0 chr6 94736874 94737100 -94542454 + AluY SINE Alu 83 309 -2 1834 38 5 0 chr6 94737195 94737405 -94542149 + AluSp SINE Alu 85 295 -18 2077 120 13 0 chr6 94737922 94738221 -94541333 - AluSx SINE Alu -9 303 1 362 240 128 67 chr6 94738330 94738509 -94541045 + MIR SINE MIR 2 191 -71 1971 128 21 0 chr6 94739008 94739296 -94540258 - AluSx SINE Alu -18 294 1 929 108 0 15 chr6 94739609 94739919 -94539635 - FLAM_C SINE Alu 0 310 3 633 241 110 84 chr6 94739920 94740301 -94539253 + L2 LINE L2 2923 3313 0 21 0 0 0 chr6 94740470 94740491 -94539063 + AT_rich Low_complexity Low_complexity 1 21 0 250 282 51 0 chr6 94740497 94740575 -94538979 - MIR SINE MIR -65 197 116 1725 144 49 46 chr6 94740578 94740883 -94538671 + AluJo SINE Alu 1 306 -6 1773 115 66 28 chr6 94741112 94741399 -94538155 + AluSx SINE Alu 1 298 -14 1141 160 6 6 chr6 94741447 94741628 -94537926 + AluJo SINE Alu 111 291 -21 786 188 0 0 chr6 94741751 94741879 -94537675 - FLAM_A SINE Alu -5 128 1 184 74 0 0 chr6 94742267 94742294 -94537260 + L2 LINE L2 3287 3313 0 2170 113 0 0 chr6 94742343 94742662 -94536892 + AluSx SINE Alu 1 319 0 2527 138 38 17 chr6 94742736 94743156 -94536398 + MSTB1 LTR MaLR 2 430 -2 2136 126 7 0 chr6 94743172 94743474 -94536080 - AluSx SINE Alu -7 305 2 2213 255 164 41 chr6 94743710 94744124 -94535430 - L2 LINE L2 -32 3281 2919 2080 117 0 0 chr6 94744124 94744419 -94535135 - AluSx SINE Alu 0 312 21 2213 255 164 41 chr6 94744419 94744947 -94534607 - L2 LINE L2 -394 2919 2457 2206 130 0 0 chr6 94744947 94745246 -94534308 + AluSx SINE Alu 1 299 -13 2213 255 164 41 chr6 94745246 94745569 -94533985 - L2 LINE L2 -856 2457 1826 549 248 0 0 chr6 94745673 94745786 -94533768 - FLAM_C SINE Alu -30 113 1 1346 183 30 11 chr6 94746036 94746299 -94533255 - AluJo SINE Alu 0 312 45 551 209 170 0 chr6 94746317 94746470 -94533084 - MER58A DNA MER1_type 0 224 46 1438 181 35 35 chr6 94746689 94746971 -94532583 + AluJo SINE Alu 11 292 -20 239 315 99 0 chr6 94748996 94749107 -94530447 - MIR SINE MIR -58 204 83 1884 161 0 26 chr6 94749660 94749970 -94529584 - AluJb SINE Alu -10 302 1 6286 167 66 49 chr6 94749972 94751585 -94527969 - L1M4c LINE L1 -4725 1659 19 1816 173 0 22 chr6 94752149 94752461 -94527093 - AluJo SINE Alu -7 305 1 1199 170 58 5 chr6 94752589 94752813 -94526741 - MER65A LTR ERV1 -159 286 51 2016 135 42 0 chr6 94753015 94753304 -94526250 - AluSx SINE Alu -11 301 1 1850 182 76 8 chr6 94753450 94753819 -94525735 - MSTD LTR MaLR -2 394 1 231 241 48 0 chr6 94754147 94754230 -94525324 - L1ME LINE L1 -318 5848 5762 2315 93 17 0 chr6 94754557 94754859 -94524695 - AluSq SINE Alu -6 307 1 276 253 13 25 chr6 94755383 94755462 -94524092 - L2 LINE L2 -7 3306 3229 1146 126 0 48 chr6 94755592 94755798 -94523756 + AluSq SINE Alu 1 196 -117 325 167 0 0 chr6 94755900 94755960 -94523594 + AluSc SINE Alu 239 298 -1 459 0 0 0 chr6 94756321 94756372 -94523182 + (CA)n Simple_repeat Simple_repeat 2 52 0 2126 88 36 29 chr6 94759349 94759655 -94519899 - AluY SINE Alu -3 308 1 244 169 225 0 chr6 94761871 94761900 -94517654 + Tigger4(Zombi) DNA MER2_type 1 22 -2709 1938 128 17 3 chr6 94761900 94762190 -94517364 + AluSx SINE Alu 1 294 -18 244 169 225 0 chr6 94762190 94762231 -94517323 + Tigger4(Zombi) DNA MER2_type 22 87 -2644 * 1654 114 87 112 chr6 94762228 94762676 -94516878 + Tigger4(Zombi) DNA MER2_type 2295 2731 0 180 0 0 0 chr6 94762796 94762816 -94516738 + (A)n Simple_repeat Simple_repeat 1 20 0 2290 96 0 0 chr6 94762990 94763283 -94516271 + AluY SINE Alu 1 293 -18 1809 145 62 10 chr6 94764276 94764566 -94514988 - AluSx SINE Alu -7 305 1 3359 176 55 59 chr6 94765180 94765275 -94514279 + MER21B LTR ERV1 1 95 -768 2370 97 0 0 chr6 94765275 94765575 -94513979 + AluSq SINE Alu 1 300 -13 3359 176 55 59 chr6 94765575 94766296 -94513258 + MER21B LTR ERV1 95 814 -49 817 156 0 22 chr6 94766344 94766479 -94513075 + FLAM_C SINE Alu 2 133 0 1254 131 0 0 chr6 94766661 94766829 -94512725 - AluSg/x SINE Alu -11 299 132 2294 107 0 3 chr6 94766829 94766853 -94512701 - AluSx SINE Alu -3 309 286 198 103 0 0 chr6 94766853 94766882 -94512672 + (TATG)n Simple_repeat Simple_repeat 4 32 0 2294 107 0 3 chr6 94766882 94767167 -94512387 - AluSx SINE Alu -26 286 1 269 87 22 0 chr6 94767167 94767213 -94512341 + AluJ/FLAM SINE Alu 33 79 -223 229 286 271 0 chr6 94767560 94767630 -94511924 - L2 LINE L2 -33 3239 3151 2282 111 0 0 chr6 94767743 94768041 -94511513 - AluSg SINE Alu -12 298 1 2495 60 0 0 chr6 94768962 94769263 -94510291 + AluY SINE Alu 1 301 -10 216 145 65 32 chr6 94769468 94769530 -94510024 + (CTATA)n Simple_repeat Simple_repeat 2 65 0 471 224 90 72 chr6 94769866 94770118 -94509436 + MLT1H LTR MaLR 3 298 -251 1460 183 22 64 chr6 94770195 94770507 -94509047 - AluJo SINE Alu -13 299 1 231 283 177 0 chr6 94770642 94770755 -94508799 + MIR SINE MIR 89 221 -41 665 126 10 0 chr6 94771910 94772013 -94507541 + FLAM_C SINE Alu 23 126 -17 567 213 19 0 chr6 94772123 94772231 -94507323 - FLAM_C SINE Alu -33 110 1 642 178 23 0 chr6 94772290 94772589 -94506965 + (TCTA)n Simple_repeat Simple_repeat 1 460 -6 599 221 7 0 chr6 94772589 94772738 -94506816 - L1MA10 LINE L1 -1 6333 6184 642 178 23 0 chr6 94772738 94772746 -94506808 + (TCTA)n Simple_repeat Simple_repeat 460 466 0 255 170 0 0 chr6 94772825 94772872 -94506682 + (TA)n Simple_repeat Simple_repeat 1 47 0 26 0 0 0 chr6 94773002 94773028 -94506526 + AT_rich Low_complexity Low_complexity 1 26 0 305 133 33 47 chr6 94773880 94774091 -94505463 + AluJb SINE Alu 1 300 -2 309 223 18 69 chr6 94774193 94774330 -94505224 + MER110 LTR ERV1 375 484 0 980 281 83 10 chr6 94774347 94774731 -94504823 + L2 LINE L2 2898 3309 -4 2240 119 7 0 chr6 94774779 94775089 -94504465 - AluSx SINE Alu 0 312 1 199 261 0 0 chr6 94775177 94775223 -94504331 + L2 LINE L2 3263 3308 -5 396 82 0 0 chr6 94775853 94775914 -94503640 + (TATG)n Simple_repeat Simple_repeat 2 62 0 222 42 62 21 chr6 94775914 94775962 -94503592 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1611 185 3 14 chr6 94775962 94776254 -94503300 - AluJo SINE Alu -21 291 3 2137 103 0 21 chr6 94776987 94777277 -94502277 + AluSg SINE Alu 8 291 -19 208 321 38 46 chr6 94777281 94777412 -94502142 - MIR3 SINE MIR -65 143 14 750 178 0 0 chr6 94777893 94778011 -94501543 + FLAM_C SINE Alu 1 118 -15 2059 153 0 0 chr6 94778125 94778433 -94501121 + AluJb SINE Alu 1 308 -4 230 298 53 21 chr6 94779142 94779236 -94500318 - L2 LINE L2 -15 3257 3161 449 333 51 30 chr6 94779246 94779277 -94500277 + MIR SINE MIR 23 52 -210 1981 129 3 44 chr6 94779277 94779594 -94499960 + AluSx SINE Alu 1 304 -8 449 333 51 30 chr6 94779594 94779796 -94499758 + MIR SINE MIR 52 261 -1 747 183 0 42 chr6 94780261 94780403 -94499151 + AluJo SINE Alu 1 136 -176 2119 117 0 0 chr6 94780591 94780899 -94498655 + AluSx SINE Alu 1 308 0 2907 13 0 0 chr6 94781360 94781672 -94497882 + AluYb8 SINE Alu 1 312 -6 245 241 121 0 chr6 94782913 94782996 -94496558 - MIR3 SINE MIR -11 197 105 2409 98 0 0 chr6 94784029 94784334 -94495220 + AluSx SINE Alu 1 305 -7 226 286 43 0 chr6 94784465 94784535 -94495019 - MIR SINE MIR -108 154 82 366 213 0 75 chr6 94784587 94784681 -94494873 - L1MC1 LINE L1 -1 6332 6246 312 156 0 0 chr6 94784717 94784762 -94494792 - Alu SINE Alu -258 45 1 784 240 108 86 chr6 94784790 94784911 -94494643 + L1ME4a LINE L1 5387 5504 -617 821 167 0 0 chr6 94784911 94785043 -94494511 + FLAM_C SINE Alu 2 133 0 784 240 108 86 chr6 94785043 94785432 -94494122 + L1ME4a LINE L1 5504 5916 -205 243 0 0 0 chr6 94785432 94785459 -94494095 + (CA)n Simple_repeat Simple_repeat 2 28 0 784 240 108 86 chr6 94785459 94785598 -94493956 + L1ME4a LINE L1 5916 6051 -70 1886 177 3 0 chr6 94785738 94786049 -94493505 + AluJo SINE Alu 1 312 0 411 271 48 58 chr6 94786057 94786264 -94493290 + MIR SINE MIR 26 230 -32 4323 82 41 0 chr6 94787026 94787589 -94491965 + HSMAR1 DNA Mariner 702 1287 0 671 301 70 41 chr6 94787678 94787929 -94491625 - L2 LINE L2 -16 3297 3028 2304 105 0 3 chr6 94787929 94788224 -94491330 + AluSx SINE Alu 1 294 -18 671 301 70 41 chr6 94788224 94788384 -94491170 - L2 LINE L2 -285 3028 2874 1946 129 4 11 chr6 94788993 94789272 -94490282 + AluJb SINE Alu 14 290 -22 684 176 9 0 chr6 94789273 94789381 -94490173 - AluJo/FLAM SINE Alu -201 111 3 1124 187 14 14 chr6 94789543 94789757 -94489797 - MER20 DNA MER1_type -5 214 1 840 202 28 0 chr6 94789852 94790030 -94489524 + MER5A DNA MER1_type 1 183 -6 2089 135 16 3 chr6 94790297 94790600 -94488954 + AluSx SINE Alu 1 307 -5 23 33 0 0 chr6 94790618 94790648 -94488906 + AT_rich Low_complexity Low_complexity 1 30 0 710 58 0 0 chr6 94790778 94790865 -94488689 - U6 snRNA snRNA -6 101 15 667 192 0 0 chr6 94790867 94790987 -94488567 - FLAM_C SINE Alu -22 121 2 1761 167 7 10 chr6 94791078 94791372 -94488182 + AluJb SINE Alu 1 293 -19 1721 126 10 68 chr6 94791933 94792243 -94487311 + AluJb SINE Alu 13 304 -8 4144 153 48 37 chr6 94792263 94792316 -94487238 + L1MB7 LINE L1 5318 5369 -815 2110 130 3 16 chr6 94792316 94792623 -94486931 + AluSq SINE Alu 1 303 -10 4144 153 48 37 chr6 94792623 94792857 -94486697 + L1MB7 LINE L1 5369 5599 -585 1698 189 33 35 chr6 94792857 94793084 -94486470 + MLT1A1 LTR MaLR 1 228 -137 2015 112 62 0 chr6 94793084 94793360 -94486194 - AluSg SINE Alu -17 293 1 1698 189 33 35 chr6 94793360 94793498 -94486056 + MLT1A1 LTR MaLR 228 365 0 4144 153 48 37 chr6 94793498 94793682 -94485872 + L1MB7 LINE L1 5599 5780 -404 1805 171 0 10 chr6 94793682 94793980 -94485574 - AluJb SINE Alu -17 295 1 4144 153 48 37 chr6 94793980 94794337 -94485217 + L1MB7 LINE L1 5780 6157 -27 2024 121 4 0 chr6 94794661 94794934 -94484620 + AluSx SINE Alu 5 278 -34 2046 175 72 36 chr6 94794964 94795439 -94484115 - LTR22B LTR ERVK 0 492 1 4913 153 16 20 chr6 94795439 94796406 -94483148 - HERVK22 LTR ERVK 0 6837 2623 3488 119 0 4 chr6 94796478 94796972 -94482582 - HERVK22 LTR ERVK -2015 4822 4331 679 139 0 0 chr6 94796972 94797073 -94482481 - LTR12 LTR ERV1 -133 581 481 293 303 10 0 chr6 94797074 94797173 -94482381 - LTR30 LTR ERV1 -79 643 544 253 179 90 0 chr6 94797173 94797240 -94482314 - LTR12 LTR ERV1 -437 277 205 1102 113 5 67 chr6 94797279 94797473 -94482081 - LTR12 LTR ERV1 -480 234 53 301 192 0 0 chr6 94797473 94797525 -94482029 - LTR30 LTR ERV1 -670 52 1 3174 96 9 5 chr6 94797525 94797963 -94481591 - HERVK22 LTR ERVK -2503 4334 3895 253 246 0 0 chr6 94898988 94899049 -94380505 - MER89 LTR ERV1 0 559 499 234 319 35 0 chr6 94899123 94899236 -94380318 - MER89 LTR ERV1 -190 369 253 1280 233 91 32 chr6 94900129 94900177 -94379377 - L1MB3 LINE L1 -4 6179 6135 2117 97 7 7 chr6 94900177 94900466 -94379088 - AluSx SINE Alu -21 291 3 1280 233 91 32 chr6 94900466 94900881 -94378673 - L1MB3 LINE L1 -48 6135 5689 972 171 0 0 chr6 94901153 94901305 -94378249 + FRAM SINE Alu 3 154 -12 819 160 0 0 chr6 94901845 94902122 -94377432 + GA-rich Low_complexity Low_complexity 1 277 0 1548 259 86 4 chr6 94902812 94903311 -94376243 + L1MC2 LINE L1 5804 6343 -1 285 29 0 0 chr6 94903463 94903497 -94376057 + (CTG)n Simple_repeat Simple_repeat 1 34 0 207 0 0 0 chr6 94903942 94903965 -94375589 + (GA)n Simple_repeat Simple_repeat 2 24 0 2139 90 0 0 chr6 94903966 94904243 -94375311 - AluSx SINE Alu -35 277 1 348 230 151 0 chr6 94904244 94904383 -94375171 + Charlie1 DNA MER1_type 2536 2695 -66 286 290 93 9 chr6 94904470 94904577 -94374977 + MIR3 SINE MIR 43 158 -50 230 313 40 0 chr6 94907247 94907346 -94372208 - MER69 DNA AcHobo -25 2501 2399 305 305 76 0 chr6 94907582 94907713 -94371841 - MER69 DNA AcHobo -245 2281 2141 272 236 42 0 chr6 94908365 94908437 -94371117 - MER69 DNA AcHobo -2350 176 102 374 214 88 31 chr6 94909099 94909258 -94370296 + MLT1A2 LTR MaLR 1 168 -206 1754 153 0 0 chr6 94909692 94909954 -94369600 + AluJo SINE Alu 29 290 -22 2392 80 0 13 chr6 94909955 94910269 -94369285 + AluY SINE Alu 1 310 -1 237 119 0 0 chr6 94911091 94911133 -94368421 + (GGAGA)n Simple_repeat Simple_repeat 1 42 0 397 248 55 35 chr6 94911671 94911748 -94367806 - Charlie5 DNA MER1_type -243 2381 2298 2377 91 0 0 chr6 94911748 94912056 -94367498 + AluSx SINE Alu 1 308 -4 397 248 55 35 chr6 94912056 94912123 -94367431 - Charlie5 DNA MER1_type -326 2298 2234 2431 61 0 0 chr6 94912715 94913011 -94366543 + AluY SINE Alu 1 296 -15 25 51 0 0 chr6 94918139 94918178 -94361376 + GC_rich Low_complexity Low_complexity 1 39 0 863 251 98 15 chr6 94921808 94921832 -94357722 - L1MB7 LINE L1 0 6184 6163 1073 214 140 12 chr6 94921832 94922154 -94357400 + MLT1A1 LTR MaLR 2 364 -1 863 251 98 15 chr6 94922154 94922455 -94357099 - L1MB7 LINE L1 -21 6163 5832 341 349 0 0 chr6 94922544 94922673 -94356881 + (CA)n Simple_repeat Simple_repeat 1 129 0 954 54 31 0 chr6 94923295 94923425 -94356129 + AluY SINE Alu 1 134 -177 2251 48 10 0 chr6 94923425 94923714 -94355840 + AluY SINE Alu 1 292 -19 300 186 76 52 chr6 94924008 94924180 -94355374 + (CAGCC)n Simple_repeat Simple_repeat 5 180 0 294 142 101 59 chr6 94924326 94924495 -94355059 + (CAGCC)n Simple_repeat Simple_repeat 1 176 0 * 302 208 64 40 chr6 94924416 94924651 -94354903 + (CCCCAG)n Simple_repeat Simple_repeat 1 240 0 266 296 61 20 chr6 94925253 94925351 -94354203 + MIR SINE MIR 47 148 -114 212 313 144 36 chr6 94927567 94927762 -94351792 - MIR SINE MIR -12 250 35 181 304 14 29 chr6 94927927 94927996 -94351558 + MER5B DNA MER1_type 105 172 -6 308 219 0 47 chr6 94928940 94929109 -94350445 + (ATGGTG)n Simple_repeat Simple_repeat 4 164 0 673 164 0 35 chr6 94929122 94929293 -94350261 + (ATGGTG)n Simple_repeat Simple_repeat 5 169 0 505 275 12 54 chr6 94929299 94929466 -94350088 - MIR SINE MIR -11 251 92 211 299 0 11 chr6 94934531 94934618 -94344936 + G-rich Low_complexity Low_complexity 1 86 0 193 250 67 0 chr6 94935978 94936038 -94343516 - L2 LINE L2 -210 3062 2999 220 300 22 22 chr6 94937989 94938079 -94341475 + MIR SINE MIR 77 166 -96 462 297 68 0 chr6 94938118 94938266 -94341288 - MIR SINE MIR -6 256 99 222 236 97 0 chr6 94938968 94939040 -94340514 + MIR SINE MIR 60 138 -124 196 275 113 0 chr6 94939315 94939395 -94340159 + MER5A DNA MER1_type 2 90 -99 293 256 0 13 chr6 94939516 94939594 -94339960 + MER91A DNA MER1_type 1 77 -119 271 233 41 0 chr6 94939814 94939887 -94339667 - MER81 DNA DNA -38 76 1 197 273 193 11 chr6 94940139 94940227 -94339327 - L2 LINE L2 -1 3312 3209 258 304 143 18 chr6 94941296 94941464 -94338090 - MER91B DNA MER1_type -1 189 1 198 0 0 0 chr6 94942136 94942158 -94337396 + (CAGGG)n Simple_repeat Simple_repeat 1 22 0 200 333 0 17 chr6 94942932 94943106 -94336448 + GA-rich Low_complexity Low_complexity 4 174 0 2209 86 28 0 chr6 94943239 94943530 -94336024 - AluSg1 SINE Alu -10 299 1 292 305 118 43 chr6 94943850 94944037 -94335517 + L2 LINE L2 3058 3258 -14 888 175 10 6 chr6 94944146 94944635 -94334919 + (TGGA)n Simple_repeat Simple_repeat 1 491 0 594 181 20 0 chr6 94944647 94944796 -94334758 + (TGGA)n Simple_repeat Simple_repeat 3 154 0 265 316 171 0 chr6 94945106 94945258 -94334296 + L2 LINE L2 2579 2756 -558 198 398 23 0 chr6 94945453 94945541 -94334013 + L2 LINE L2 3175 3264 -49 384 265 24 77 chr6 94946078 94946248 -94333306 - MIR SINE MIR -55 207 47 * 491 256 128 57 chr6 94946191 94946418 -94333136 + MIR SINE MIR 12 254 -8 2155 99 27 0 chr6 94946529 94946821 -94332733 + AluSx SINE Alu 1 300 -12 273 260 115 0 chr6 94946821 94946917 -94332637 - L1M4 LINE L1 -2685 3461 3355 326 374 154 0 chr6 94946923 94947105 -94332449 - L1M4 LINE L1 -2808 3338 3129 26 64 0 0 chr6 94948530 94948577 -94330977 + GC_rich Low_complexity Low_complexity 1 47 0 28 29 0 0 chr6 94948956 94948991 -94330563 + GC_rich Low_complexity Low_complexity 1 35 0 187 77 26 26 chr6 94949004 94949043 -94330511 + (CGGGGG)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chr6 94949079 94949103 -94330451 + GC_rich Low_complexity Low_complexity 1 24 0 1726 118 20 39 chr6 94949265 94949570 -94329984 + AluJb SINE Alu 1 299 -13 195 205 0 0 chr6 94949647 94949686 -94329868 + MIR SINE MIR 109 147 -61 331 255 99 21 chr6 94953392 94953591 -94325963 + MLT1B LTR MaLR 119 345 -122 237 338 130 13 chr6 94953936 94954090 -94325464 - MIR SINE MIR -61 201 30 2006 116 24 7 chr6 94954129 94954422 -94325132 - AluSx SINE Alu -14 298 1 211 253 23 46 chr6 94954431 94954518 -94325036 - MIR SINE MIR -70 192 108 414 253 110 0 chr6 94956381 94956527 -94323027 + G-rich Low_complexity Low_complexity 5 166 0 405 270 26 0 chr6 94958850 94958965 -94320589 + MIR SINE MIR 45 162 -100 562 331 5 22 chr6 94960987 94961171 -94318383 + MIR SINE MIR 81 261 -1 2531 52 0 3 chr6 94961467 94961777 -94317777 + AluY SINE Alu 1 309 -2 380 307 166 3 chr6 94962489 94962785 -94316769 + MLT1G1 LTR MaLR 236 579 -16 250 353 68 23 chr6 94962816 94962949 -94316605 + MIR SINE MIR 85 223 -39 470 245 112 5 chr6 94962951 94963139 -94316415 + MLT1C LTR MaLR 53 260 -207 4083 191 42 10 chr6 94965329 94966117 -94313437 - Tigger1 DNA MER2_type -1425 993 171 2372 82 0 0 chr6 94966117 94966423 -94313131 + AluSq SINE Alu 1 306 -7 4083 191 42 10 chr6 94966423 94966548 -94313006 - Tigger1 DNA MER2_type -2247 171 51 227 270 40 10 chr6 94967562 94967662 -94311892 + (CCCA)n Simple_repeat Simple_repeat 2 104 0 463 196 6 30 chr6 94967719 94967887 -94311667 + (CCCA)n Simple_repeat Simple_repeat 4 167 0 319 253 188 32 chr6 94967956 94968356 -94311198 - MLT1D LTR MaLR -6 499 38 228 258 0 0 chr6 94969022 94969119 -94310435 + (CA)n Simple_repeat Simple_repeat 1 97 0 202 217 0 22 chr6 94969141 94969187 -94310367 + (CA)n Simple_repeat Simple_repeat 1 45 0 334 248 7 7 chr6 94969209 94969346 -94310208 + (CA)n Simple_repeat Simple_repeat 1 137 0 452 248 4 0 chr6 94969393 94969651 -94309903 + (CA)n Simple_repeat Simple_repeat 1 259 0 538 226 4 17 chr6 94969708 94969953 -94309601 + (CA)n Simple_repeat Simple_repeat 1 241 0 324 233 23 74 chr6 94970733 94970909 -94308645 + (CCCCAA)n Simple_repeat Simple_repeat 6 172 0 198 171 0 0 chr6 94970919 94970960 -94308594 + (CCCTAA)n Simple_repeat Simple_repeat 6 46 0 403 293 89 56 chr6 94972686 94972991 -94306563 + L1MEc LINE L1 665 1007 -5198 373 204 98 23 chr6 94973084 94973216 -94306338 - MLT1C LTR MaLR -231 236 95 821 210 17 0 chr6 94975180 94975356 -94304198 - MER2 DNA MER2_type -165 180 2 368 294 57 76 chr6 94975404 94975666 -94303888 - L2 LINE L2 -12 3260 3004 21 0 0 0 chr6 94975952 94975973 -94303581 + AT_rich Low_complexity Low_complexity 1 21 0 2295 83 0 7 chr6 94975974 94976274 -94303280 + AluSx SINE Alu 1 298 -14 2260 75 0 3 chr6 94976274 94976568 -94302986 + AluY SINE Alu 1 293 -18 292 171 26 26 chr6 94976576 94976652 -94302902 + MLT1C LTR MaLR 62 137 -330 280 293 50 35 chr6 94977804 94978002 -94301552 + MLT1C LTR MaLR 90 290 -300 642 86 0 0 chr6 94978152 94978259 -94301295 - AluSp/q SINE Alu 0 311 205 1565 197 62 23 chr6 94978448 94978856 -94300698 - LTR8 LTR ERV1 0 691 309 822 237 45 45 chr6 94979092 94979404 -94300150 - LTR8 LTR ERV1 -379 312 1 230 207 0 73 chr6 94979875 94979957 -94299597 + G-rich Low_complexity Low_complexity 6 81 0 737 316 208 18 chr6 94980394 94981343 -94298211 + L1MEc LINE L1 7 1135 -5261 238 336 45 0 chr6 94981469 94981603 -94297951 + L1MEc LINE L1 1086 1225 -4992 254 329 70 47 chr6 94981983 94982028 -94297526 + L1MEc LINE L1 1852 1894 -4502 2414 55 3 0 chr6 94982028 94982321 -94297233 - AluY SINE Alu -17 294 1 254 329 70 47 chr6 94982321 94982488 -94297066 + L1MEc LINE L1 1894 2069 -4327 403 299 90 0 chr6 94983489 94983623 -94295931 - MIR SINE MIR -21 241 96 261 236 56 0 chr6 94983890 94983962 -94295592 - LTR67 LTR ERVL -480 77 2 992 159 16 11 chr6 94984031 94984220 -94295334 - AluJo SINE Alu -2 310 121 253 215 31 0 chr6 94985073 94985138 -94294416 - MER53 DNA DNA 0 189 123 2507 68 0 0 chr6 94985139 94985449 -94294105 - AluY SINE Alu -1 310 1 718 256 25 5 chr6 94985517 94985716 -94293838 + L1MB3 LINE L1 5980 6182 -1 251 204 29 68 chr6 94985697 94985800 -94293754 + L1MB7 LINE L1 6080 6178 -6 * 2233 97 3 7 chr6 94985992 94986302 -94293252 + AluSx SINE Alu 1 309 -3 305 283 87 14 chr6 94986856 94986994 -94292560 - MLT1K LTR MaLR -29 559 412 347 281 125 86 chr6 94987304 94987689 -94291865 + MLT1L LTR MaLR 20 419 -196 342 286 126 25 chr6 94987689 94987808 -94291746 + L1ME3A LINE L1 6035 6165 -5 267 277 229 6 chr6 94987808 94987974 -94291580 + MLT1L LTR MaLR 403 605 -10 1041 70 53 0 chr6 94988548 94988601 -94290953 + (CACCAT)n Simple_repeat Simple_repeat 1 235 0 1041 70 53 0 chr6 94988601 94988772 -94290782 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 1073 115 0 16 chr6 94988907 94989090 -94290464 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 358 270 71 24 chr6 94990902 94991028 -94288526 - MIR SINE MIR -14 248 117 264 314 35 0 chr6 94993480 94993566 -94285988 - MIR SINE MIR -59 149 61 356 321 8 15 chr6 94997864 94997998 -94281556 + MLT1L LTR MaLR 321 453 -162 1586 216 64 33 chr6 94998349 94998867 -94280687 + MLT2B3 LTR ERVL 21 554 0 476 326 115 19 chr6 94998900 94999285 -94280269 + MLT1C LTR MaLR 1 432 -35 1989 132 7 3 chr6 94999285 94999581 -94279973 - AluSx SINE Alu -15 297 1 476 326 115 19 chr6 94999581 94999621 -94279933 + MLT1C LTR MaLR 432 467 0 183 304 166 40 chr6 95000780 95001027 -94278527 - L2 LINE L2 -572 2742 2465 367 313 20 7 chr6 95001121 95001271 -94278283 + MLT1D LTR MaLR 34 185 -320 372 280 93 0 chr6 95001274 95001456 -94278098 + MLT1D LTR MaLR 298 496 -9 205 287 139 19 chr6 95002089 95002197 -94277357 + L2 LINE L2 3174 3294 -19 270 203 58 0 chr6 95002364 95002433 -94277121 - MLT1D LTR MaLR -108 397 325 * 556 319 63 4 chr6 95002431 95002685 -94276869 + MLT1K LTR MaLR 314 582 -6 258 344 13 20 chr6 95003287 95003438 -94276116 + GA-rich Low_complexity Low_complexity 5 154 0 180 125 0 0 chr6 95003554 95003586 -94275968 + (G)n Simple_repeat Simple_repeat 1 32 0 325 353 69 28 chr6 95003879 95004097 -94275457 + HAL1 LINE L1 2233 2459 -48 1535 88 0 0 chr6 95004101 95004295 -94275259 - AluSx SINE Alu -19 293 100 1883 178 68 32 chr6 95004312 95004755 -94274799 + LTR2B LTR ERV1 32 490 0 794 77 10 0 chr6 95004755 95004859 -94274695 - AluSx SINE Alu -208 105 1 433 214 0 0 chr6 95005401 95005485 -94274069 + AluJ/FRAM SINE Alu 229 312 0 624 211 6 11 chr6 95007525 95007700 -94271854 + CT-rich Low_complexity Low_complexity 1 174 0 222 333 101 0 chr6 95007746 95007845 -94271709 - L2 LINE L2 -1 3271 3163 392 183 76 18 chr6 95007988 95008109 -94271445 + MSTC LTR MaLR 211 398 -28 207 189 8 107 chr6 95008424 95008546 -94271008 + CT-rich Low_complexity Low_complexity 4 113 0 1502 164 35 4 chr6 95013869 95014125 -94265429 - AluJo SINE Alu -48 264 1 265 327 27 20 chr6 95014192 95014342 -94265212 - HAL1 LINE L1 -763 1744 1594 2454 72 0 0 chr6 95014344 95014649 -94264905 - AluSx SINE Alu -7 305 1 24 0 0 0 chr6 95014651 95014675 -94264879 + AT_rich Low_complexity Low_complexity 1 24 0 2252 108 0 0 chr6 95014675 95014980 -94264574 - AluSx SINE Alu -7 305 1 456 276 82 5 chr6 95014982 95015178 -94264376 - L1MEc LINE L1 -3784 2431 2221 429 227 110 6 chr6 95015387 95015550 -94264004 - L1MEc LINE L1 -4198 2198 2019 975 281 116 0 chr6 95015865 95016367 -94263187 + L1MB5 LINE L1 5615 6174 0 348 290 48 7 chr6 95016656 95016801 -94262753 + MLT1D LTR MaLR 51 201 -304 1462 192 7 36 chr6 95017469 95017777 -94261777 - AluY SINE Alu -2 299 1 889 98 0 38 chr6 95018895 95019027 -94260527 + AluSq/x SINE Alu 6 132 -181 2051 74 3 74 chr6 95019030 95019354 -94260200 + AluSg SINE Alu 1 301 -9 228 180 62 112 chr6 95019919 95020097 -94259457 - MER20B DNA MER1_type -36 747 579 265 256 128 0 chr6 95020386 95020464 -94259090 + MLT1L LTR MaLR 347 434 -181 348 281 59 20 chr6 95020791 95020944 -94258610 + MLT1D LTR MaLR 28 186 -319 2071 108 41 3 chr6 95023011 95023306 -94256248 - AluSx SINE Alu -6 306 1 364 261 90 0 chr6 95023384 95023495 -94256059 + Tigger3(Golem) DNA MER2_type 2900 3020 -9 351 0 0 0 chr6 95024821 95024860 -94254694 + (TG)n Simple_repeat Simple_repeat 2 40 0 42 77 0 0 chr6 95025992 95026083 -94253471 + GC_rich Low_complexity Low_complexity 1 91 0 26 50 0 0 chr6 95026163 95026203 -94253351 + GC_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr6 95026282 95026310 -94253244 + GC_rich Low_complexity Low_complexity 1 28 0 225 125 0 106 chr6 95027235 95027339 -94252215 + (AGGGGG)n Simple_repeat Simple_repeat 5 97 0 2008 85 3 14 chr6 95029296 95029579 -94249975 + AluSx SINE Alu 1 280 -32 202 272 33 43 chr6 95030222 95030314 -94249240 + (TCCA)n Simple_repeat Simple_repeat 4 94 0 269 314 34 42 chr6 95030355 95030473 -94249081 - L2 LINE L2 -30 3283 3167 313 194 94 62 chr6 95031210 95031370 -94248184 - MLT1H1 LTR MaLR -70 485 321 339 345 11 0 chr6 95032388 95032626 -94246928 + (TG)n Simple_repeat Simple_repeat 1 240 0 340 331 11 11 chr6 95032665 95032843 -94246711 + (TG)n Simple_repeat Simple_repeat 2 179 0 332 317 5 38 chr6 95033050 95033236 -94246318 + (TG)n Simple_repeat Simple_repeat 1 180 0 399 347 11 6 chr6 95033331 95033507 -94246047 + (TG)n Simple_repeat Simple_repeat 1 177 0 799 254 54 45 chr6 95033691 95034026 -94245528 + L1MB7 LINE L1 5825 6162 -22 357 299 85 70 chr6 95034067 95034227 -94245327 - L2 LINE L2 -2 3311 3155 2094 99 3 30 chr6 95034227 95034530 -94245024 + AluSq SINE Alu 1 295 -18 2328 60 0 3 chr6 95034532 95034850 -94244704 + AluY SINE Alu 1 317 0 357 299 85 70 chr6 95034850 95034956 -94244598 - L2 LINE L2 -158 3155 3037 1342 210 75 6 chr6 95034956 95035303 -94244251 + L1MA9 LINE L1 4837 5207 -939 2129 229 28 5 chr6 95035448 95036039 -94243515 + L1MA9 LINE L1 5193 5793 -498 251 143 0 36 chr6 95036077 95036133 -94243421 + (GGGGA)n Simple_repeat Simple_repeat 3 56 0 279 79 0 0 chr6 95036137 95036175 -94243379 + (CA)n Simple_repeat Simple_repeat 2 39 0 315 136 0 49 chr6 95036189 95036270 -94243284 + (GGGAA)n Simple_repeat Simple_repeat 5 81 0 192 152 0 0 chr6 95036276 95036309 -94243245 + (CA)n Simple_repeat Simple_repeat 2 34 0 777 128 0 69 chr6 95036333 95036394 -94243160 + (GGGGA)n Simple_repeat Simple_repeat 2 66 -110 369 62 0 0 chr6 95036394 95036442 -94243112 + (CA)n Simple_repeat Simple_repeat 2 49 0 777 128 0 69 chr6 95036442 95036568 -94242986 + (GGGGA)n Simple_repeat Simple_repeat 66 176 0 414 248 0 0 chr6 95036572 95036681 -94242873 + (CA)n Simple_repeat Simple_repeat 2 110 0 207 69 0 0 chr6 95036717 95036746 -94242808 + (GA)n Simple_repeat Simple_repeat 1 29 0 780 243 73 4 chr6 95036747 95036758 -94242796 + L1MA9 LINE L1 5815 5824 -488 254 50 25 0 chr6 95036758 95036798 -94242756 + (CAGGG)n Simple_repeat Simple_repeat 2 42 0 780 243 73 4 chr6 95036798 95037058 -94242496 + L1MA9 LINE L1 5824 6105 -207 1071 146 109 0 chr6 95037060 95037252 -94242302 - AluJb SINE Alu -14 298 86 715 234 29 6 chr6 95037270 95037441 -94242113 + L1MA9 LINE L1 6138 6312 0 181 258 15 15 chr6 95037474 95037540 -94242014 - L2 LINE L2 -325 2988 2923 1233 158 22 26 chr6 95038180 95038408 -94241146 - L1MB1 LINE L1 0 6168 5942 1790 154 13 10 chr6 95038415 95038713 -94240841 - AluJo SINE Alu -9 303 5 1894 140 0 13 chr6 95038727 95039027 -94240527 - AluJo SINE Alu -14 298 3 2183 99 3 0 chr6 95039036 95039330 -94240224 - AluSp SINE Alu -18 295 1 745 265 79 1 chr6 95039413 95039701 -94239853 + L1 LINE L1 4024 4329 -1817 1676 171 46 23 chr6 95039701 95040006 -94239548 - AluJb SINE Alu 0 312 1 1046 182 12 6 chr6 95040007 95040275 -94239279 - L1MB1 LINE L1 -203 5975 5693 553 217 86 0 chr6 95040327 95040502 -94239052 - L1MB7 LINE L1 -8 6176 5987 396 228 100 18 chr6 95040533 95040720 -94238834 + MLT1H1 LTR MaLR 81 296 -294 1140 117 10 35 chr6 95040947 95041144 -94238410 - AluSg/x SINE Alu 0 312 121 400 245 7 39 chr6 95041550 95041705 -94237849 + G-rich Low_complexity Low_complexity 2 151 0 502 250 2 44 chr6 95041716 95042155 -94237399 + G-rich Low_complexity Low_complexity 1 420 0 413 236 3 36 chr6 95042180 95042508 -94237046 + G-rich Low_complexity Low_complexity 1 317 0 327 120 20 40 chr6 95042549 95042649 -94236905 + (CAGAGA)n Simple_repeat Simple_repeat 5 102 0 372 352 97 57 chr6 95042654 95043191 -94236363 + L1M4c LINE L1 937 1513 -1230 2129 117 0 0 chr6 95043200 95043506 -94236048 + AluSg SINE Alu 1 306 0 1476 139 0 19 chr6 95043523 95043782 -94235772 + AluSq SINE Alu 6 259 -54 443 308 108 50 chr6 95044374 95044760 -94234794 + L1MB5 LINE L1 4216 4675 -1471 228 300 0 0 chr6 95045342 95045402 -94234152 + (TG)n Simple_repeat Simple_repeat 1 60 0 2039 175 43 14 chr6 95045402 95045597 -94233957 + Tigger2a DNA MER2_type 1 189 -2519 396 0 0 0 chr6 95045597 95045641 -94233913 + (TG)n Simple_repeat Simple_repeat 1 44 0 553 104 0 215 chr6 95045641 95045785 -94233769 - FLAM_A SINE Alu -19 114 2 2039 175 43 14 chr6 95045785 95046010 -94233544 + Tigger2a DNA MER2_type 188 434 0 339 278 0 40 chr6 95046237 95046410 -94233144 + (CACCAT)n Simple_repeat Simple_repeat 1 166 0 229 271 82 71 chr6 95047580 95047750 -94231804 + LTR33 LTR ERVL 37 208 -313 223 339 9 9 chr6 95047935 95048050 -94231504 + CT-rich Low_complexity Low_complexity 2 116 0 1684 222 100 32 chr6 95048964 95049463 -94230091 + L1MB5 LINE L1 5293 5825 -349 1751 161 0 27 chr6 95049464 95049763 -94229791 + AluSx SINE Alu 1 291 -21 332 305 67 12 chr6 95050691 95050855 -94228699 - Charlie8 DNA MER1_type -2208 209 37 509 247 177 14 chr6 95052412 95052660 -94226894 - MER33 DNA MER1_type 0 363 34 808 125 7 15 chr6 95052800 95052936 -94226618 + AluSg/x SINE Alu 177 311 -1 294 281 308 9 chr6 95053721 95053942 -94225612 + L2 LINE L2 3027 3313 0 246 269 19 56 chr6 95054613 95054773 -94224781 + (CGGGG)n Simple_repeat Simple_repeat 5 158 0 204 200 0 0 chr6 95055809 95055844 -94223710 + (CGGA)n Simple_repeat Simple_repeat 2 36 0 623 249 40 0 chr6 95063389 95063562 -94215992 + MLT1B LTR MaLR 1 180 -210 271 270 44 0 chr6 95063849 95063986 -94215568 + MLT1B LTR MaLR 167 309 -81 401 247 11 39 chr6 95064449 95064627 -94214927 + G-rich Low_complexity Low_complexity 2 174 0 205 234 35 71 chr6 95064642 95064783 -94214771 + G-rich Low_complexity Low_complexity 2 137 0 271 189 0 0 chr6 95065413 95065466 -94214088 + G-rich Low_complexity Low_complexity 1 53 0 363 181 0 0 chr6 95066042 95066114 -94213440 + (TG)n Simple_repeat Simple_repeat 1 72 0 233 138 0 52 chr6 95066230 95066288 -94213266 + (TG)n Simple_repeat Simple_repeat 2 56 0 246 260 10 30 chr6 95066303 95066403 -94213151 + (ACGTG)n Simple_repeat Simple_repeat 1 98 0 221 333 12 12 chr6 95067617 95067788 -94211766 + (CGGA)n Simple_repeat Simple_repeat 3 173 0 323 245 48 27 chr6 95068079 95068226 -94211328 + L1ME LINE L1 5371 5520 -650 225 293 189 12 chr6 95068394 95068558 -94210996 + MER91A DNA MER1_type 4 196 0 498 195 0 139 chr6 95070089 95070465 -94209089 + C-rich Low_complexity Low_complexity 1 323 0 358 318 47 0 chr6 95071381 95071510 -94208044 - MLT1D LTR MaLR -1 504 370 248 341 0 0 chr6 95073099 95073275 -94206279 + (CAGAG)n Simple_repeat Simple_repeat 5 180 0 52 50 0 0 chr6 95074854 95074934 -94204620 + GC_rich Low_complexity Low_complexity 1 80 0 25 95 0 0 chr6 95074983 95075057 -94204497 + GC_rich Low_complexity Low_complexity 1 74 0 207 180 31 87 chr6 95075157 95075318 -94204236 + (CCGGG)n Simple_repeat Simple_repeat 5 156 0 25 0 0 0 chr6 95075330 95075355 -94204199 + GC_rich Low_complexity Low_complexity 1 25 0 217 118 29 73 chr6 95075363 95075431 -94204123 + (CGGG)n Simple_repeat Simple_repeat 3 67 0 497 243 53 20 chr6 95076204 95076356 -94203198 + MER3 DNA MER1_type 48 204 -5 294 340 94 0 chr6 95076362 95076468 -94203086 + MIR SINE MIR 32 147 -115 182 69 35 0 chr6 95076637 95076666 -94202888 - MER5A DNA MER1_type -156 33 4 1322 109 16 11 chr6 95179927 95180111 -94099443 + L1PA7 LINE L1 5963 6147 -7 21 0 0 0 chr6 95180127 95180148 -94099406 + AT_rich Low_complexity Low_complexity 1 21 0 441 284 174 7 chr6 95180668 95180823 -94098731 + MER5A DNA MER1_type 9 189 0 237 303 45 83 chr6 95180841 95180973 -94098581 + MER5B DNA MER1_type 11 137 -41 2009 152 6 3 chr6 95181356 95181691 -94097863 - Tigger1 DNA MER2_type 0 2418 2083 917 137 0 128 chr6 95181702 95181906 -94097648 + AluJo SINE Alu 3 180 -132 11613 125 23 49 chr6 95181909 95184009 -94095545 - Tigger1 DNA MER2_type -371 2047 1 2254 151 8 25 chr6 95184034 95184431 -94095123 - MLT1B LTR MaLR 0 390 1 2113 128 3 0 chr6 95184437 95184735 -94094819 + AluSx SINE Alu 1 299 -13 401 211 28 16 chr6 95185243 95185385 -94094169 - L1MD3 LINE L1 0 7995 7639 439 245 177 46 chr6 95185576 95185831 -94093723 - MLT1K LTR MaLR 0 588 368 2446 203 50 37 chr6 95185831 95186446 -94093108 + MLT1E3 LTR MaLR 1 623 -1 439 245 177 46 chr6 95186446 95186528 -94093026 - MLT1K LTR MaLR -220 368 135 705 233 17 28 chr6 95186619 95186799 -94092755 + MIR SINE MIR 85 262 0 28749 73 18 3 chr6 95187693 95191584 -94087970 + HERVL LTR ERVL 1628 5577 -77 1564 252 116 63 chr6 95192089 95192357 -94087197 - HAL1 LINE L1 -246 2261 2009 1670 135 176 19 chr6 95192357 95192727 -94086827 + MSTA LTR MaLR 1 428 0 1564 252 116 63 chr6 95192727 95192789 -94086765 - HAL1 LINE L1 -498 2009 1952 1998 158 7 0 chr6 95192789 95193086 -94086468 + AluJb SINE Alu 1 299 -13 1564 252 116 63 chr6 95193086 95193755 -94085799 - HAL1 LINE L1 -555 1952 1208 558 287 0 0 chr6 95193766 95193881 -94085673 - L2 LINE L2 0 3313 3199 2405 101 0 13 chr6 95193896 95194212 -94085342 - AluSx SINE Alu 0 312 1 381 306 118 42 chr6 95194213 95194503 -94085051 - L1MC/D LINE L1 -513 5608 5310 2038 195 33 22 chr6 95194625 95195082 -94084472 + ERVL LTR ERVL 1527 1988 -3776 1656 172 108 0 chr6 95195613 95195927 -94083627 + MER7A DNA MER2_type 1 346 0 1506 194 18 75 chr6 95196507 95196739 -94082815 - MLT1A1 LTR MaLR 0 365 162 2230 107 0 0 chr6 95196739 95197037 -94082517 - AluSx SINE Alu -14 298 1 1506 194 18 75 chr6 95197037 95197191 -94082363 - MLT1A1 LTR MaLR -203 162 1 260 128 21 0 chr6 95197628 95197675 -94081879 - L3 LINE CR1 -183 1394 1347 1496 311 175 28 chr6 95198057 95198295 -94081259 - L2 LINE L2 0 3313 3111 2287 100 3 0 chr6 95198295 95198596 -94080958 + AluSp SINE Alu 1 302 -11 1496 311 175 28 chr6 95198596 95199721 -94079833 - L2 LINE L2 -202 3111 1718 2542 81 3 0 chr6 95199754 95200064 -94079490 + AluSx SINE Alu 1 311 -1 2387 190 25 23 chr6 95200084 95200648 -94078906 - L1ME2 LINE L1 -213 5951 5387 320 278 105 96 chr6 95201627 95201961 -94077593 - L1M2 LINE L1 -5720 1129 793 2210 90 3 3 chr6 95202559 95202860 -94076694 - AluSg SINE Alu -9 301 1 1802 96 118 11 chr6 95202862 95203133 -94076421 - AluSg SINE Alu -9 301 2 2945 146 52 2 chr6 95204555 95205118 -94074436 - L1MA9 LINE L1 0 6312 5722 450 254 71 46 chr6 95205680 95205877 -94073677 + MIR SINE MIR 3 204 -58 193 224 184 0 chr6 95206454 95206503 -94073051 + MIR SINE MIR 194 251 -11 2175 105 27 0 chr6 95207008 95207304 -94072250 - AluSc SINE Alu -5 304 1 21 89 0 0 chr6 95207850 95207906 -94071648 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr6 95208794 95208817 -94070737 + AT_rich Low_complexity Low_complexity 1 23 0 2138 97 11 0 chr6 95209025 95209351 -94070203 - AluSc SINE Alu 0 329 1 402 316 112 14 chr6 95209433 95209648 -94069906 + MER112 DNA MER1_type 23 258 -2 618 353 48 10 chr6 95209844 95210133 -94069421 - L2 LINE L2 -397 2917 2618 468 354 99 52 chr6 95210595 95210817 -94068737 - L1MEd LINE L1 -5345 774 564 2079 116 39 0 chr6 95210817 95211101 -94068453 + AluSq SINE Alu 1 295 -18 468 354 99 52 chr6 95211101 95211615 -94067939 - L1MEd LINE L1 -5555 564 3 186 205 107 161 chr6 95212437 95212549 -94067005 - L2 LINE L2 -90 3223 3118 29 78 0 0 chr6 95212732 95212796 -94066758 + AT_rich Low_complexity Low_complexity 1 64 0 653 219 48 48 chr6 95213352 95213539 -94066015 - MER5A DNA MER1_type 0 189 3 359 325 128 29 chr6 95213749 95214023 -94065531 + MER102b DNA MER1_type 27 327 -14 317 255 157 0 chr6 95214108 95214210 -94065344 - L2 LINE L2 0 3313 3196 2346 90 7 3 chr6 95215503 95215804 -94063750 - AluSx SINE Alu -10 302 1 2343 185 86 24 chr6 95216277 95216723 -94062831 + MER67C LTR ERV1 1 503 -207 2210 156 32 52 chr6 95216723 95217218 -94062336 - MER31A LTR ERV1 0 485 1 2343 185 86 24 chr6 95217218 95217436 -94062118 + MER67C LTR ERV1 503 706 -4 241 229 294 0 chr6 95217743 95217852 -94061702 - Charlie8 DNA MER1_type -2273 144 4 932 164 31 0 chr6 95218288 95218447 -94061107 + MER58B DNA MER1_type 169 332 -9 257 299 69 0 chr6 95218454 95218541 -94061013 + L2 LINE L2 2661 2753 -561 479 211 205 6 chr6 95219546 95219702 -94059852 - MER58A DNA MER1_type -1 223 37 25 0 0 0 chr6 95220732 95220757 -94058797 + AT_rich Low_complexity Low_complexity 1 25 0 2379 65 0 0 chr6 95220797 95221087 -94058467 + AluY SINE Alu 1 290 -21 262 326 43 0 chr6 95221220 95221312 -94058242 - MIR SINE MIR -48 214 119 241 218 128 13 chr6 95221429 95221507 -94058047 - MIR3 SINE MIR -8 200 114 2036 127 30 30 chr6 95221646 95222041 -94057513 - Tigger4(Zombi) DNA MER2_type -1 2730 2336 627 148 48 176 chr6 95222044 95222144 -94057410 - Tigger4(Zombi) DNA MER2_type -2500 231 120 1753 115 0 0 chr6 95222144 95222387 -94057167 - AluSg/x SINE Alu 0 312 70 627 148 48 176 chr6 95222387 95222405 -94057149 - Tigger4(Zombi) DNA MER2_type -2611 120 101 1018 190 0 11 chr6 95222405 95222579 -94056975 - FAM SINE Alu -3 172 1 627 148 48 176 chr6 95222579 95222669 -94056885 - Tigger4(Zombi) DNA MER2_type -2630 101 49 2224 92 7 0 chr6 95223057 95223338 -94056216 + AluSc SINE Alu 12 294 -15 29 47 0 0 chr6 95223506 95223549 -94056005 + AT_rich Low_complexity Low_complexity 1 43 0 906 149 0 15 chr6 95223641 95223775 -94055779 - FLAM_C SINE Alu -11 132 1 239 291 183 6 chr6 95227551 95227726 -94051828 + MIR SINE MIR 6 211 -51 9170 93 20 1 chr6 95228147 95229410 -94050144 + HSMAR1 DNA Mariner 1 1287 0 288 283 108 0 chr6 95231147 95231267 -94048287 - MER112 DNA MER1_type -126 134 2 533 238 99 59 chr6 95232135 95232337 -94047217 + MIR SINE MIR 43 252 -10 23 54 0 0 chr6 95232787 95232824 -94046730 + AT_rich Low_complexity Low_complexity 1 37 0 245 255 207 7 chr6 95233148 95233293 -94046261 - L1MC/D LINE L1 -2328 5480 5307 22 0 0 0 chr6 95234144 95234166 -94045388 + AT_rich Low_complexity Low_complexity 1 22 0 199 253 137 110 chr6 95234223 95234523 -94045031 + L2 LINE L2 2630 2937 -377 1698 161 0 56 chr6 95235244 95235548 -94044006 + AluJb SINE Alu 3 289 -23 2404 83 0 10 chr6 95236532 95236845 -94042709 + AluY SINE Alu 1 310 -1 613 189 284 8 chr6 95237722 95237976 -94041578 - MER5C DNA MER1_type 0 324 1 354 294 15 112 chr6 95239237 95239362 -94040192 + L2 LINE L2 2825 2926 -387 1527 172 24 24 chr6 95239362 95239653 -94039901 - AluJo SINE Alu -21 291 1 354 294 15 112 chr6 95239653 95239724 -94039830 + L2 LINE L2 2926 3002 -311 240 263 0 0 chr6 95239816 95239873 -94039681 + L2 LINE L2 3257 3313 0 211 288 14 14 chr6 95239871 95239944 -94039610 - MIR SINE MIR -73 189 117 * 220 268 0 18 chr6 95240127 95240183 -94039371 - MIR SINE MIR -59 149 95 320 302 9 38 chr6 95240236 95240342 -94039212 - L2 LINE L2 -2 3311 3209 23 54 0 0 chr6 95241064 95241101 -94038453 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr6 95241176 95241204 -94038350 + AT_rich Low_complexity Low_complexity 1 28 0 266 380 8 8 chr6 95241697 95241818 -94037736 + MIR SINE MIR 52 172 -90 2222 109 6 0 chr6 95241915 95242226 -94037328 + AluSq SINE Alu 1 313 0 296 176 15 0 chr6 95242598 95242666 -94036888 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 283 268 37 24 chr6 95243062 95243144 -94036410 - MIR3 SINE MIR -12 196 114 23 0 0 0 chr6 95243346 95243369 -94036185 + AT_rich Low_complexity Low_complexity 1 23 0 1125 235 109 53 chr6 95243381 95243514 -94036040 + L1ME3A LINE L1 5649 5773 -397 842 185 68 0 chr6 95243514 95243676 -94035878 + FAM SINE Alu 1 173 -2 1125 235 109 53 chr6 95243676 95244036 -94035518 + L1ME3A LINE L1 5773 6170 0 1118 168 6 0 chr6 95244561 95244740 -94034814 - AluJo SINE Alu -132 180 1 798 167 0 36 chr6 95246242 95246380 -94033174 - FLAM_C SINE Alu 0 133 1 2193 106 0 10 chr6 95246389 95246701 -94032853 - AluSc SINE Alu 0 309 1 21 0 0 0 chr6 95248076 95248097 -94031457 + AT_rich Low_complexity Low_complexity 1 21 0 208 307 67 13 chr6 95248264 95248339 -94031215 + L2 LINE L2 3169 3247 -25 195 42 0 0 chr6 95249325 95249349 -94030205 + (TATG)n Simple_repeat Simple_repeat 3 26 0 818 154 0 22 chr6 95249397 95249533 -94030021 - FLAM_C SINE Alu -10 133 1 524 101 54 0 chr6 95249595 95249724 -94029830 + (TA)n Simple_repeat Simple_repeat 1 136 0 1195 159 15 10 chr6 95249724 95249925 -94029629 - AluJo SINE Alu -24 288 87 2622 229 171 50 chr6 95249934 95251272 -94028282 - HAL1 LINE L1 -1 2506 1007 326 218 75 60 chr6 95251309 95251442 -94028112 - HAL1 LINE L1 -1572 935 801 204 283 0 17 chr6 95251442 95251502 -94028052 - MIR SINE MIR -13 249 191 981 172 89 0 chr6 95251517 95251697 -94027857 - AluJo SINE Alu -116 196 1 2254 110 0 0 chr6 95252295 95252605 -94026949 - AluSg SINE Alu 0 310 1 826 242 107 13 chr6 95253457 95253921 -94025633 - L1ME4a LINE L1 -43 6078 5558 1218 225 58 14 chr6 95253958 95254305 -94025249 + L1MB7 LINE L1 5814 6175 -9 289 308 26 0 chr6 95254977 95255055 -94024499 + MIR3 SINE MIR 116 195 -13 240 359 35 0 chr6 95258219 95258325 -94021229 + MIR SINE MIR 34 144 -64 256 258 32 0 chr6 95259700 95259762 -94019792 + MIR SINE MIR 83 146 -62 32 43 0 0 chr6 95261111 95261157 -94018397 + AT_rich Low_complexity Low_complexity 1 46 0 180 0 0 0 chr6 95262447 95262467 -94017087 + (TG)n Simple_repeat Simple_repeat 1 20 0 1823 128 73 4 chr6 95262898 95263172 -94016382 + AluSx SINE Alu 3 295 -17 2117 97 17 0 chr6 95263806 95264094 -94015460 + AluSx SINE Alu 12 304 -8 301 308 0 0 chr6 95266402 95266467 -94013087 - L2 LINE L2 -5 3267 3203 231 301 85 39 chr6 95266683 95266836 -94012718 + L2 LINE L2 2351 2510 -804 * 736 285 94 8 chr6 95266830 95267065 -94012489 + MIR SINE MIR 8 262 0 358 371 129 15 chr6 95267066 95267392 -94012162 + L2 LINE L2 2488 2850 -464 2443 183 112 50 chr6 95267418 95268096 -94011458 + LTR8A LTR ERV1 8 727 0 292 368 119 14 chr6 95268100 95268385 -94011169 + L2 LINE L2 2950 3264 -49 1989 113 31 3 chr6 95268385 95268678 -94010876 + LTR28 LTR ERV1 1 301 -719 856 152 78 45 chr6 95268679 95268922 -94010632 + Charlie5 DNA MER1_type 2374 2624 0 21 36 0 0 chr6 95269733 95269761 -94009793 + AT_rich Low_complexity Low_complexity 1 28 0 293 279 27 48 chr6 95270452 95270599 -94008955 + L2 LINE L2 2918 3061 -211 247 204 19 0 chr6 95271631 95271685 -94007869 + MIR3 SINE MIR 153 207 -1 610 303 64 0 chr6 95273137 95273325 -94006229 + MIR SINE MIR 63 262 0 26 50 0 0 chr6 95274597 95274637 -94004917 + AT_rich Low_complexity Low_complexity 1 40 0 249 254 135 15 chr6 95276082 95276200 -94003354 - MIR SINE MIR -65 143 19 337 235 39 49 chr6 95276380 95276482 -94003072 - L1MC5 LINE L1 -53 7908 7808 217 306 69 14 chr6 95276648 95276720 -94002834 - L2 LINE L2 -2129 1185 1110 261 236 28 0 chr6 95277713 95277785 -94001769 - L1ME4a LINE L1 -111 6010 5937 2346 91 0 0 chr6 95277815 95278122 -94001432 - AluY SINE Alu -2 309 3 255 287 172 16 chr6 95278127 95278391 -94001163 - L1MC4a LINE L1 -319 5802 5629 2169 160 191 125 chr6 95278423 95278976 -94000578 - L1MD3 LINE L1 0 7995 7480 431 213 21 21 chr6 95278976 95279070 -94000484 - MLT1F1 LTR MaLR -433 134 41 2169 160 191 125 chr6 95279070 95279203 -94000351 - L1MD3 LINE L1 -515 7480 7357 279 0 0 0 chr6 95279203 95279234 -94000320 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2169 160 191 125 chr6 95279234 95279433 -94000121 - L1MD3 LINE L1 -638 7357 6748 1995 110 17 0 chr6 95279467 95279758 -93999796 - AluSx SINE Alu -16 296 1 308 245 0 43 chr6 95279917 95280011 -93999543 - L1MC4a LINE L1 -705 5416 5327 324 0 0 0 chr6 95280029 95280065 -93999489 + (TG)n Simple_repeat Simple_repeat 1 36 0 311 268 134 32 chr6 95280077 95280234 -93999320 - L1MC4a LINE L1 -891 5255 5083 1107 213 75 42 chr6 95281845 95282179 -93997375 - MER2 DNA MER2_type 0 345 1 300 27 0 0 chr6 95282401 95282438 -93997116 + (TC)n Simple_repeat Simple_repeat 1 37 0 219 391 11 0 chr6 95282533 95282620 -93996934 - L2 LINE L2 -45 3268 3181 2414 95 0 0 chr6 95283037 95283343 -93996211 + AluSx SINE Alu 1 306 -6 1701 211 128 24 chr6 95284232 95284598 -93994956 + MLT1F1 LTR MaLR 3 428 -139 3114 108 4 23 chr6 95284598 95284982 -93994572 - MER4C LTR ERV1 0 465 90 2140 133 0 0 chr6 95284982 95285284 -93994270 + AluSx SINE Alu 1 302 -10 3114 108 4 23 chr6 95285284 95285373 -93994181 - MER4C LTR ERV1 -375 90 1 1701 211 128 24 chr6 95285373 95285466 -93994088 + MLT1F1 LTR MaLR 428 510 -57 833 223 57 14 chr6 95285876 95286087 -93993467 + MER58A DNA MER1_type 1 220 -4 186 133 0 0 chr6 95286679 95286709 -93992845 + (T)n Simple_repeat Simple_repeat 1 30 0 186 43 0 0 chr6 95287278 95287301 -93992253 + (TAGG)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr6 95287504 95287534 -93992020 + AT_rich Low_complexity Low_complexity 1 30 0 1063 300 46 2 chr6 95287546 95287979 -93991575 - L1ME3A LINE L1 -225 5945 5494 421 247 60 28 chr6 95288061 95288243 -93991311 + L1MC4a LINE L1 4105 4292 -1854 753 187 0 7 chr6 95288251 95288390 -93991164 + FLAM_C SINE Alu 6 143 0 866 110 0 133 chr6 95288423 95288596 -93990958 + AluJb SINE Alu 132 281 -31 212 83 0 28 chr6 95288599 95288635 -93990919 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 39 0 0 0 chr6 95288671 95288710 -93990844 + AT_rich Low_complexity Low_complexity 1 39 0 327 196 43 0 chr6 95288787 95288925 -93990629 + (TA)n Simple_repeat Simple_repeat 2 145 0 477 294 76 65 chr6 95288958 95289061 -93990493 + L1MC4a LINE L1 4381 4481 -1665 2322 112 0 0 chr6 95289061 95289366 -93990188 - AluSg SINE Alu -2 308 4 477 294 76 65 chr6 95289366 95289898 -93989656 + L1MC4a LINE L1 4481 5030 -1116 2005 121 0 7 chr6 95289898 95290217 -93989337 + AluSc SINE Alu 1 317 0 477 294 76 65 chr6 95290217 95290396 -93989158 + L1MC4a LINE L1 5030 5206 -940 803 127 15 22 chr6 95290408 95290542 -93989012 + AluJ SINE Alu 1 133 -169 796 237 16 0 chr6 95290571 95290761 -93988793 + AluJ SINE Alu 120 312 0 2411 285 129 27 chr6 95290783 95291217 -93988337 + L1MC4a LINE L1 5254 5642 -2166 222 37 0 0 chr6 95291217 95291244 -93988310 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 2411 285 129 27 chr6 95291244 95292386 -93987168 + L1MC4a LINE L1 5642 6991 -817 1027 169 11 16 chr6 95292391 95292575 -93986979 + AluJo SINE Alu 120 302 -10 2341 209 87 51 chr6 95292579 95293488 -93986066 + L1MC5 LINE L1 6971 7912 -49 24 0 0 0 chr6 95293977 95294001 -93985553 + AT_rich Low_complexity Low_complexity 1 24 0 191 244 24 73 chr6 95294264 95294346 -93985208 - MIR SINE MIR -74 188 111 207 188 21 20 chr6 95294392 95294441 -93985113 + MIR SINE MIR 95 144 -64 5035 163 44 3 chr6 95294616 95295953 -93983601 + L1PB4 LINE L1 4767 6154 -2 212 226 75 75 chr6 95295973 95296079 -93983475 + L3 LINE CR1 1190 1295 -282 321 276 0 13 chr6 95296095 95296171 -93983383 + L3 LINE CR1 1427 1501 -76 275 274 0 16 chr6 95296349 95296411 -93983143 - L2 LINE L2 -6 3307 3247 2098 106 0 0 chr6 95297700 95297975 -93981579 - AluSq SINE Alu -10 303 29 210 241 0 19 chr6 95298139 95298193 -93981361 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 206 294 21 98 chr6 95298332 95298475 -93981079 - MIR3 SINE MIR -50 158 27 3396 190 83 109 chr6 95298643 95299010 -93980544 + Charlie1a DNA MER1_type 4 379 -2382 2072 117 0 0 chr6 95299010 95299340 -93980214 + AluY SINE Alu 1 330 0 3396 190 83 109 chr6 95299340 95299632 -93979922 + Charlie1a DNA MER1_type 379 677 -2084 2171 110 0 13 chr6 95299632 95299932 -93979622 - AluSx SINE Alu -16 296 1 3396 190 83 109 chr6 95299932 95300414 -93979140 + Charlie1a DNA MER1_type 677 1117 -338 373 245 0 11 chr6 95300414 95300508 -93979046 + Charlie1a DNA MER1_type 1363 1455 0 1132 134 60 53 chr6 95300616 95300717 -93978837 + L1MA8 LINE L1 6006 6105 -186 2409 53 3 10 chr6 95300717 95301019 -93978535 - AluY SINE Alu -11 300 1 1132 134 60 53 chr6 95301019 95301201 -93978353 + L1MA8 LINE L1 6105 6291 0 30 89 0 0 chr6 95302213 95302292 -93977262 + AT_rich Low_complexity Low_complexity 1 79 0 719 278 139 41 chr6 95303397 95303702 -93975852 - L1MC4a LINE L1 -1883 5925 5651 1921 135 0 4 chr6 95303702 95303976 -93975578 + AluSg SINE Alu 6 278 -32 719 278 139 41 chr6 95303976 95304274 -93975280 - L1MC4a LINE L1 -2157 5651 5263 313 180 16 0 chr6 95304410 95304471 -93975083 + L1ME LINE L1 5542 5603 -563 829 204 23 42 chr6 95304472 95304688 -93974866 + L1ME1 LINE L1 5041 5252 -894 2048 166 36 20 chr6 95304797 95305238 -93974316 + L1ME1 LINE L1 5319 5766 -418 725 117 0 0 chr6 95305250 95305353 -93974201 + AluSp SINE Alu 1 103 -210 1042 226 27 15 chr6 95305381 95305642 -93973912 + L1ME1 LINE L1 5898 6161 -5 275 108 0 0 chr6 95305979 95306016 -93973538 + AluJ/FLAM SINE Alu 43 79 -223 25 0 0 0 chr6 95306020 95306045 -93973509 + AT_rich Low_complexity Low_complexity 1 25 0 263 247 206 41 chr6 95306066 95306163 -93973391 + L2 LINE L2 3195 3307 -6 491 281 55 0 chr6 95306519 95306647 -93972907 + MIR SINE MIR 20 154 -108 324 263 197 42 chr6 95307026 95307239 -93972315 - MIR SINE MIR -14 248 3 215 347 80 60 chr6 95307700 95307951 -93971603 + L2 LINE L2 2201 2456 -858 271 159 0 0 chr6 95307955 95307999 -93971555 - FRAM/FAM SINE Alu -91 75 32 1638 196 7 0 chr6 95308022 95308313 -93971241 + AluJb SINE Alu 1 293 -19 513 334 37 90 chr6 95308595 95309029 -93970525 + L2 LINE L2 2844 3254 -18 23 0 0 0 chr6 95309413 95309436 -93970118 + AT_rich Low_complexity Low_complexity 1 23 0 644 328 79 42 chr6 95309488 95309665 -93969889 + L2 LINE L2 1868 2037 -1277 2068 140 7 0 chr6 95309665 95309973 -93969581 - AluSx SINE Alu -2 310 1 644 328 79 42 chr6 95309973 95310249 -93969305 + L2 LINE L2 2037 2338 -976 2409 92 7 0 chr6 95310840 95311144 -93968410 + AluSg SINE Alu 3 308 -2 21 0 0 0 chr6 95311196 95311217 -93968337 + AT_rich Low_complexity Low_complexity 1 21 0 466 216 73 149 chr6 95311247 95311548 -93968006 - L2 LINE L2 -1 3312 3035 751 248 86 23 chr6 95311552 95311903 -93967651 + L1M4 LINE L1 3151 3523 -2623 286 243 0 0 chr6 95312052 95312122 -93967432 + L1M4 LINE L1 3775 3844 -2302 416 304 117 4 chr6 95312147 95312394 -93967160 + L1M4 LINE L1 4075 4349 -1797 330 176 83 28 chr6 95312400 95312508 -93967046 + L1M4 LINE L1 5079 5192 -954 636 246 10 20 chr6 95312557 95312760 -93966794 + L1ME2 LINE L1 5969 6162 -2 544 223 107 22 chr6 95312787 95313011 -93966543 + L1MEd LINE L1 991 1233 -4886 2362 91 6 3 chr6 95313014 95313345 -93966209 - L1PB1 LINE L1 -8 6143 5812 23 0 0 0 chr6 95313386 95313409 -93966145 + AT_rich Low_complexity Low_complexity 1 23 0 242 322 83 25 chr6 95313429 95313550 -93966004 - L2 LINE L2 -195 3118 2991 561 296 42 96 chr6 95313578 95313984 -93965570 - L2 LINE L2 -417 2897 2514 559 257 86 17 chr6 95313970 95314145 -93965409 - MIR SINE MIR 0 262 76 * 490 323 99 19 chr6 95314223 95314486 -93965068 - L2 LINE L2 -820 2494 2211 789 223 67 18 chr6 95314521 95314745 -93964809 + L1MA9 LINE L1 6040 6274 -38 480 335 92 17 chr6 95314764 95315003 -93964551 - L2 LINE L2 -1108 2206 1950 2428 60 0 3 chr6 95315185 95315484 -93964070 + AluY SINE Alu 1 298 -13 700 172 97 22 chr6 95315896 95316123 -93963431 - Charlie1 DNA MER1_type -70 2691 2448 355 161 12 12 chr6 95316710 95316791 -93962763 + (TA)n Simple_repeat Simple_repeat 2 82 0 261 0 0 0 chr6 95316791 95316820 -93962734 + (CA)n Simple_repeat Simple_repeat 2 30 0 3249 174 75 111 chr6 95317294 95318232 -93961322 + MER21A LTR ERV1 1 904 -27 1662 156 52 0 chr6 95318316 95318663 -93960891 + AluJo SINE Alu 1 361 0 1866 218 136 18 chr6 95320094 95320118 -93959436 + MLT1F1 LTR MaLR 1 21 -546 1273 191 94 18 chr6 95320118 95320395 -93959159 + AluJo SINE Alu 1 298 -14 1866 218 136 18 chr6 95320395 95320870 -93958684 + MLT1F1 LTR MaLR 21 559 -8 3474 181 55 43 chr6 95321030 95321268 -93958286 + L1MB8 LINE L1 4867 5101 -1077 2193 127 0 0 chr6 95321268 95321576 -93957978 + AluSx SINE Alu 1 308 -4 3474 181 55 43 chr6 95321576 95322567 -93956987 + L1MB8 LINE L1 5101 6111 -67 2158 97 0 26 chr6 95322567 95322875 -93956679 - AluSg SINE Alu -10 300 1 3474 181 55 43 chr6 95322875 95322907 -93956647 + L1MB8 LINE L1 6111 6141 -37 222 204 184 68 chr6 95323242 95323345 -93956209 - L2 LINE L2 -5 3308 3194 1454 208 88 10 chr6 95323480 95323788 -93955766 + Tigger7 DNA MER2_type 7 338 -395 789 169 14 14 chr6 95323793 95323935 -93955619 + Tigger7 DNA MER2_type 2339 2480 -7 1852 117 86 72 chr6 95325208 95325567 -93953987 + THE1B LTR MaLR 1 364 0 346 123 185 49 chr6 95325754 95325835 -93953719 - MER5C DNA MER1_type 0 324 233 380 182 57 0 chr6 95325862 95325950 -93953604 - MER5C DNA MER1_type -200 124 32 573 291 68 42 chr6 95326132 95326369 -93953185 + MIR SINE MIR 20 262 0 411 163 25 12 chr6 95326567 95326592 -93952962 - L1MA10 LINE L1 -41 6293 6269 291 174 0 194 chr6 95326592 95326690 -93952864 - L1ME1 LINE L1 -58 6108 6030 23 0 0 0 chr6 95326821 95326844 -93952710 + AT_rich Low_complexity Low_complexity 1 23 0 2282 100 3 0 chr6 95327781 95328081 -93951473 + AluSc SINE Alu 1 301 -8 239 303 86 40 chr6 95328141 95328293 -93951261 + L2 LINE L2 196 354 -2960 193 250 0 0 chr6 95328293 95328329 -93951225 + L2 LINE L2 2717 2752 -562 2235 86 3 7 chr6 95328329 95328619 -93950935 + AluY SINE Alu 1 289 -22 264 30 0 0 chr6 95328622 95328655 -93950899 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 708 280 101 9 chr6 95328738 95328956 -93950598 - MIR SINE MIR -22 240 3 1358 328 120 29 chr6 95329018 95329969 -93949585 + L2 LINE L2 1089 2125 -1189 2116 137 42 47 chr6 95329970 95330372 -93949182 + Tigger2a DNA MER2_type 1 400 -34 253 248 176 32 chr6 95330374 95330499 -93949055 + L2 LINE L2 2125 2267 -1047 215 281 229 21 chr6 95330538 95330634 -93948920 + L2 LINE L2 2631 2746 -568 232 71 0 0 chr6 95330635 95330663 -93948891 + Alu SINE Alu 255 282 -17 534 16 0 0 chr6 95330663 95330726 -93948828 + (CATAA)n Simple_repeat Simple_repeat 2 64 0 479 353 92 38 chr6 95330891 95331282 -93948272 + L2 LINE L2 2901 3312 -1 1963 118 7 35 chr6 95331610 95331931 -93947623 + AluSx SINE Alu 1 313 0 1615 168 81 3 chr6 95332050 95332371 -93947183 - MER7A DNA MER2_type -1 345 2 506 266 146 10 chr6 95332855 95333054 -93946500 - MIR SINE MIR -26 236 11 2319 101 0 0 chr6 95333393 95333690 -93945864 + AluSx SINE Alu 1 297 -15 4797 140 59 25 chr6 95333719 95335094 -93944460 - L1MA8 LINE L1 -5 6286 4854 1844 134 62 0 chr6 95335094 95335369 -93944185 + AluSx SINE Alu 1 292 -20 4797 140 59 25 chr6 95335369 95335689 -93943865 - L1MA8 LINE L1 -1437 4854 4547 1122 85 171 20 chr6 95338530 95338729 -93940825 - MER30 DNA MER1_type -1 229 1 1748 159 17 40 chr6 95338808 95339110 -93940444 - AluJo SINE Alu -17 295 1 4054 175 58 29 chr6 95339118 95339156 -93940398 - L1MB2 LINE L1 -1 6170 6135 790 141 33 0 chr6 95339156 95339277 -93940277 - FLAM_C SINE Alu -8 125 1 4054 175 58 29 chr6 95339277 95339974 -93939580 - L1MB2 LINE L1 -36 6135 5460 1977 100 46 4 chr6 95339974 95340255 -93939299 - AluSc SINE Alu -16 293 1 4054 175 58 29 chr6 95340255 95340952 -93938602 - L1MB2 LINE L1 -711 5460 4689 307 330 122 37 chr6 95340989 95341259 -93938295 + L2 LINE L2 3005 3297 -16 257 236 121 21 chr6 95341273 95341413 -93938141 + L1MC4a LINE L1 5789 5942 -1866 343 203 63 0 chr6 95341538 95341617 -93937937 - MER47A DNA MER2_type 0 366 283 451 189 0 0 chr6 95341634 95341708 -93937846 - AluJ/FLAM SINE Alu -238 74 1 376 100 50 0 chr6 95341708 95341768 -93937786 - L1MB2 LINE L1 -32 6139 6077 1435 184 0 8 chr6 95341782 95342049 -93937505 - MER47A DNA MER2_type -101 265 1 215 0 0 62 chr6 95342177 95342209 -93937345 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1237 251 180 26 chr6 95342435 95342890 -93936664 + MLT1F LTR MaLR 12 536 -6 2194 115 0 16 chr6 95343109 95343421 -93936133 + AluSx SINE Alu 1 307 -5 1284 245 73 20 chr6 95344893 95344988 -93934566 - MER113 DNA MER1_type? -1 520 431 2016 125 17 3 chr6 95344988 95345277 -93934277 + AluSx SINE Alu 1 293 -19 1284 245 73 20 chr6 95345277 95345674 -93933880 - MER113 DNA MER1_type? -90 431 2 203 273 127 0 chr6 95345680 95345735 -93933819 - L2 LINE L2 0 3272 3211 434 232 16 16 chr6 95345929 95346054 -93933500 + L1ME2 LINE L1 6031 6155 -9 24 53 0 0 chr6 95346847 95346885 -93932669 + AT_rich Low_complexity Low_complexity 1 38 0 333 173 120 73 chr6 95347064 95347214 -93932340 - MER103 DNA DNA -8 158 2 218 264 42 28 chr6 95347334 95347406 -93932148 - MIR SINE MIR -116 92 20 314 321 84 79 chr6 95348279 95348859 -93930695 + L1M2 LINE L1 560 1142 -5707 265 308 34 68 chr6 95349013 95349159 -93930395 - MIR3 SINE MIR -24 184 44 1532 77 227 12 chr6 95349626 95349873 -93929681 + AluSg1 SINE Alu 1 300 -9 411 284 184 0 chr6 95351031 95351172 -93928382 + MER5A DNA MER1_type 23 189 0 2288 76 3 13 chr6 95351983 95352284 -93927270 + AluSc SINE Alu 11 308 -1 2640 209 45 26 chr6 95352305 95353055 -93926499 - L1ME2 LINE L1 -213 5951 5184 2134 135 3 6 chr6 95353055 95353367 -93926187 - AluJb SINE Alu -1 311 1 2640 209 45 26 chr6 95353367 95353716 -93925838 - L1ME2 LINE L1 -980 5184 4843 21 71 0 0 chr6 95353887 95353929 -93925625 + AT_rich Low_complexity Low_complexity 1 42 0 647 211 176 0 chr6 95353947 95354151 -93925403 + MSTB2 LTR MaLR 1 240 -217 351 320 105 60 chr6 95354239 95354639 -93924915 - L2 LINE L2 0 3313 2896 393 224 0 104 chr6 95354661 95354795 -93924759 + MER63 DNA MER1_type 6 751 -311 346 257 0 0 chr6 95354889 95354963 -93924591 - L2 LINE L2 -511 2803 2730 1470 240 137 28 chr6 95355122 95356222 -93923332 - L1MC4a LINE L1 -168 7670 6460 974 144 41 36 chr6 95356307 95356501 -93923053 + MLT1A2 LTR MaLR 1 195 -179 324 85 102 0 chr6 95356497 95356556 -93922998 + MLT1A2 LTR MaLR 310 374 0 * 790 193 55 69 chr6 95357010 95357090 -93922464 + MER58C DNA MER1_type 1 81 -2339 1660 164 23 29 chr6 95357090 95357400 -93922154 - AluJo SINE Alu -4 308 1 790 193 55 69 chr6 95357400 95357537 -93922017 + MER58C DNA MER1_type 81 215 0 277 239 30 14 chr6 95358769 95358864 -93920690 + MIR SINE MIR 35 131 -77 348 100 0 0 chr6 95358890 95358940 -93920614 - L1MC1 LINE L1 -39 6294 6245 953 250 161 18 chr6 95359039 95359375 -93920179 - L2 LINE L2 0 3313 2930 22 0 0 0 chr6 95360334 95360356 -93919198 + AT_rich Low_complexity Low_complexity 1 22 0 250 250 0 56 chr6 95360537 95360609 -93918945 + L2 LINE L2 3246 3313 0 2272 96 0 0 chr6 95361549 95361842 -93917712 + AluSg1 SINE Alu 1 293 -16 225 289 53 35 chr6 95363164 95363278 -93916276 + L2 LINE L2 2363 2478 -836 777 102 88 7 chr6 95363305 95363442 -93916112 + MER30 DNA MER1_type 53 200 -30 291 317 100 43 chr6 95363473 95363842 -93915712 + L2 LINE L2 2487 2876 -438 182 341 146 0 chr6 95364092 95364174 -93915380 + L2 LINE L2 3124 3217 -55 931 240 77 5 chr6 95364222 95364443 -93915111 + MIR SINE MIR 23 259 -3 221 271 0 29 chr6 95364477 95364547 -93915007 + L2 LINE L2 3246 3313 0 200 319 174 22 chr6 95365229 95365367 -93914187 + MIR SINE MIR 47 205 -57 393 285 65 16 chr6 95365997 95366120 -93913434 + MIR3 SINE MIR 34 162 -46 23 0 0 0 chr6 95366238 95366261 -93913293 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 95366573 95366594 -93912960 + AT_rich Low_complexity Low_complexity 1 21 0 205 338 72 14 chr6 95368162 95368301 -93911253 + L2 LINE L2 2701 2847 -467 2525 46 7 0 chr6 95368392 95368697 -93910857 - AluY SINE Alu -4 307 1 380 255 41 0 chr6 95368701 95368799 -93910755 + MIR SINE MIR 95 196 -66 297 369 10 0 chr6 95369421 95369524 -93910030 - L2 LINE L2 -1 3271 3168 267 290 40 30 chr6 95369525 95369625 -93909929 + L2 LINE L2 2946 3046 -226 280 336 112 15 chr6 95369885 95370019 -93909535 + L2 LINE L2 3122 3268 -4 243 226 206 29 chr6 95370092 95370194 -93909360 - L3 LINE CR1 -195 1382 1263 2086 196 105 10 chr6 95370343 95370858 -93908696 + L1MD3 LINE L1 7430 7993 -2 310 276 69 38 chr6 95371214 95371475 -93908079 + L1ME4a LINE L1 5538 5806 -315 362 250 73 15 chr6 95371584 95371720 -93907834 + L1ME4a LINE L1 5978 6121 0 35 88 0 0 chr6 95373078 95373169 -93906385 + AT_rich Low_complexity Low_complexity 1 91 0 2227 87 3 3 chr6 95374287 95374576 -93904978 + AluSc SINE Alu 1 289 -20 232 228 41 41 chr6 95374990 95375113 -93904441 - L1MC5 LINE L1 -282 7679 7557 234 0 0 0 chr6 95376089 95376115 -93903439 + (GA)n Simple_repeat Simple_repeat 2 27 0 381 209 55 80 chr6 95376271 95376358 -93903196 + MER112 DNA MER1_type 95 179 -81 2027 109 7 0 chr6 95376358 95376675 -93902879 + AluSg1 SINE Alu 1 319 0 381 209 55 80 chr6 95376675 95376749 -93902805 + MER112 DNA MER1_type 179 253 -7 182 343 56 37 chr6 95377381 95377489 -93902065 + MIR SINE MIR 27 136 -72 225 211 0 0 chr6 95378190 95378242 -93901312 + T-rich Low_complexity Low_complexity 1 52 0 329 325 90 42 chr6 95378848 95379227 -93900327 + HAL1 LINE L1 3 399 -2108 1166 162 0 0 chr6 95379398 95379571 -93899983 + FAM SINE Alu 2 174 -1 323 264 176 53 chr6 95379593 95379968 -93899586 + HAL1 LINE L1 760 1180 -1327 2328 101 0 13 chr6 95379971 95380287 -93899267 + AluSx SINE Alu 1 312 0 558 287 0 0 chr6 95380302 95380417 -93899137 + L2 LINE L2 3199 3313 0 1598 251 115 62 chr6 95380428 95381097 -93898457 + HAL1 LINE L1 1208 1840 -667 1998 158 7 0 chr6 95381097 95381394 -93898160 - AluJb SINE Alu -13 299 1 1598 251 115 62 chr6 95381394 95381456 -93898098 + HAL1 LINE L1 1840 1897 -610 1848 132 170 14 chr6 95381456 95381826 -93897728 - MSTA LTR MaLR 0 428 1 1598 251 115 62 chr6 95381826 95382094 -93897460 + HAL1 LINE L1 1897 2261 -246 2472 135 31 17 chr6 95382760 95383182 -93896372 - MSTA LTR MaLR 0 428 1 1344 205 53 19 chr6 95383183 95383557 -93895997 + MSTB LTR MaLR 1 359 -67 2506 114 8 0 chr6 95383557 95383918 -93895636 - THE1B LTR MaLR 0 364 1 6850 110 29 1 chr6 95383918 95384947 -93894607 - THE1B-int LTR MaLR 0 1580 523 759 87 0 0 chr6 95384977 95385081 -93894473 - THE1B-int LTR MaLR -271 1309 1206 2680 99 79 98 chr6 95385087 95385266 -93894288 - THE1B-int LTR MaLR -997 583 402 1989 154 3 3 chr6 95385266 95385565 -93893989 + AluSx SINE Alu 1 299 -13 2680 99 79 98 chr6 95385565 95385979 -93893575 - THE1B-int LTR MaLR -1178 402 1 2648 109 0 8 chr6 95385979 95386346 -93893208 - THE1B LTR MaLR 0 364 1 270 98 66 82 chr6 95386347 95386408 -93893146 + MSTB LTR MaLR 356 415 -11 1251 298 59 34 chr6 95386673 95387895 -93891659 + L1ME LINE L1 1206 2375 -4584 745 279 85 25 chr6 95388477 95389085 -93890469 + L1MEc LINE L1 1022 1678 -4718 2497 74 3 0 chr6 95389109 95389418 -93890136 - AluSg SINE Alu 0 310 1 25 0 0 0 chr6 95389579 95389604 -93889950 + AT_rich Low_complexity Low_complexity 1 25 0 1231 172 109 0 chr6 95389640 95389887 -93889667 + AluJo SINE Alu 37 307 0 1540 172 45 28 chr6 95390116 95390407 -93889147 - AluJo SINE Alu -14 298 3 557 316 90 50 chr6 95390508 95390669 -93888885 - L1ME LINE L1 -348 5773 5620 2338 105 0 0 chr6 95390669 95390974 -93888580 - AluSx SINE Alu -7 305 1 557 316 90 50 chr6 95390974 95391188 -93888366 - L1ME LINE L1 -501 5620 5383 3866 188 26 13 chr6 95391387 95392163 -93887391 + ERVL LTR ERVL 1527 2312 -3452 2415 101 31 0 chr6 95392694 95393049 -93886505 - L1PB1 LINE L1 -1 6150 5785 261 0 0 0 chr6 95394327 95394356 -93885198 + (TG)n Simple_repeat Simple_repeat 2 30 0 334 173 12 12 chr6 95394356 95394437 -93885117 + (TA)n Simple_repeat Simple_repeat 2 82 0 669 167 97 22 chr6 95395024 95395251 -93884303 + Charlie1 DNA MER1_type 2448 2691 -70 2488 70 0 0 chr6 95395663 95395961 -93883593 - AluY SINE Alu -13 298 1 22 35 0 0 chr6 95397069 95397098 -93882456 + AT_rich Low_complexity Low_complexity 1 29 0 319 280 78 89 chr6 95397235 95397506 -93882048 - L1ME4a LINE L1 -17 6104 5837 29 47 0 0 chr6 95397770 95397813 -93881741 + AT_rich Low_complexity Low_complexity 1 43 0 1247 167 114 52 chr6 95398152 95398476 -93881078 - MER2 DNA MER2_type 0 344 1 2633 101 70 149 chr6 95398496 95399068 -93880486 - MER1A DNA MER1_type 0 527 1 24 0 0 0 chr6 95400970 95400994 -93878560 + AT_rich Low_complexity Low_complexity 1 24 0 833 131 0 58 chr6 95401072 95401209 -93878345 + FLAM_C SINE Alu 1 129 -4 527 108 0 0 chr6 95401727 95401810 -93877744 + L1MB5 LINE L1 5851 5933 -241 2507 74 0 0 chr6 95401927 95402238 -93877316 - AluY SINE Alu 0 311 1 26 64 0 0 chr6 95402406 95402453 -93877101 + AT_rich Low_complexity Low_complexity 1 47 0 234 130 43 22 chr6 95402653 95402745 -93876809 + (TTATA)n Simple_repeat Simple_repeat 5 98 0 335 271 116 50 chr6 95402786 95403170 -93876384 - L1M4 LINE L1 -1311 4835 4419 1753 174 10 3 chr6 95403170 95403468 -93876086 - AluJb SINE Alu -12 300 1 335 271 116 50 chr6 95403468 95403507 -93876047 - L1M4 LINE L1 -1727 4419 4384 197 65 32 0 chr6 95403548 95403579 -93875975 + (CCCCCA)n Simple_repeat Simple_repeat 4 35 0 304 349 77 22 chr6 95403951 95404315 -93875239 + L1MC/D LINE L1 5344 5727 -2081 307 261 68 11 chr6 95404532 95404620 -93874934 + L1MD2 LINE L1 5075 5167 -979 1036 164 22 43 chr6 95404620 95404852 -93874702 + L1MD2 LINE L1 5600 5826 -533 1298 205 25 46 chr6 95404873 95405156 -93874398 + AluJo SINE Alu 21 297 -15 1995 172 98 25 chr6 95405157 95405645 -93873909 + L1MD2 LINE L1 5822 6345 -14 25 65 0 0 chr6 95405762 95405808 -93873746 + AT_rich Low_complexity Low_complexity 1 46 0 1452 131 34 37 chr6 95406064 95406122 -93873432 - L1MB7 LINE L1 -19 6165 6108 2822 3 0 0 chr6 95406122 95406427 -93873127 - AluYa5 SINE Alu -6 305 1 1452 131 34 37 chr6 95406427 95406636 -93872918 - L1MB7 LINE L1 -76 6108 5899 1095 196 53 50 chr6 95406637 95407055 -93872499 + L1MC5 LINE L1 7499 7917 -44 2332 83 7 3 chr6 95407183 95407484 -93872070 - AluSp SINE Alu -2 311 10 2950 134 18 7 chr6 95408970 95409418 -93870136 + MLT2A2 LTR ERVL 1 453 0 201 39 0 0 chr6 95410779 95410805 -93868749 + (CA)n Simple_repeat Simple_repeat 2 27 0 1640 104 50 4 chr6 95410827 95411067 -93868487 - AluSp SINE Alu -12 301 51 599 328 45 8 chr6 95411220 95411467 -93868087 + MIR SINE MIR 2 257 -5 271 279 0 0 chr6 95412611 95412690 -93866864 + MER34 LTR ERV1 1 79 -463 243 0 0 0 chr6 95413051 95413078 -93866476 + (T)n Simple_repeat Simple_repeat 1 27 0 269 159 0 0 chr6 95413078 95413122 -93866432 - tRNA-Gln-CAA tRNA tRNA 0 75 32 23 54 0 0 chr6 95413608 95413645 -93865909 + AT_rich Low_complexity Low_complexity 1 37 0 533 320 31 16 chr6 95413825 95414081 -93865473 + MER34 LTR ERV1 254 513 -29 23 78 0 0 chr6 95414392 95414443 -93865111 + AT_rich Low_complexity Low_complexity 1 51 0 460 305 0 30 chr6 95414568 95414699 -93864855 + MIR SINE MIR 25 151 -57 333 250 142 0 chr6 95414932 95415052 -93864502 + MIR SINE MIR 124 260 -2 1976 132 0 3 chr6 95415622 95415951 -93863603 - AluSx SINE Alu 0 328 1 319 308 93 9 chr6 95416891 95416998 -93862556 - MIR3 SINE MIR -31 177 62 1004 283 86 30 chr6 95418599 95419151 -93860403 + L2 LINE L2 2716 3297 -16 213 319 106 11 chr6 95419871 95419965 -93859589 - MIR3 SINE MIR -3 205 103 1688 176 14 0 chr6 95420084 95420363 -93859191 + AluJb SINE Alu 12 294 -18 764 285 64 0 chr6 95420396 95420631 -93858923 - MIR SINE MIR -1 261 12 317 262 16 8 chr6 95420659 95420781 -93858773 + MER103 DNA DNA 34 156 -10 4607 103 14 3 chr6 95421538 95422229 -93857325 - L1MA3 LINE L1 0 7724 7026 568 138 0 0 chr6 95422230 95422310 -93857244 - AluS SINE Alu -232 80 1 13989 156 25 24 chr6 95422310 95425262 -93854292 - L1MA3 LINE L1 -690 7034 4085 207 0 0 0 chr6 95425262 95425285 -93854269 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 13989 156 25 24 chr6 95425285 95429128 -93850426 - L1MA3 LINE L1 -3639 4085 132 1869 169 3 6 chr6 95429128 95429441 -93850113 - AluJb SINE Alu 0 312 1 13989 156 25 24 chr6 95429441 95429513 -93850041 - L1MA3 LINE L1 -7592 132 62 8163 104 77 4 chr6 95429530 95430850 -93848704 - THE1C-int LTR MaLR -163 1417 1 1789 151 73 25 chr6 95430850 95431208 -93848346 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr6 95431217 95431239 -93848315 + AT_rich Low_complexity Low_complexity 1 22 0 25 95 0 0 chr6 95431458 95431532 -93848022 + AT_rich Low_complexity Low_complexity 1 74 0 2021 125 31 0 chr6 95431573 95431861 -93847693 - AluSx SINE Alu -15 297 1 24 0 0 0 chr6 95431915 95431939 -93847615 + AT_rich Low_complexity Low_complexity 1 24 0 1520 127 35 176 chr6 95432992 95433395 -93846159 - Tigger3(Golem) DNA MER2_type -2 3027 1 182 328 109 16 chr6 95433469 95433533 -93846021 - L3b LINE CR1 -2 1581 1512 950 144 0 88 chr6 95433712 95433893 -93845661 - FRAM SINE Alu -13 163 1 331 245 98 133 chr6 95433899 95434042 -93845512 - MER5A DNA MER1_type -3 186 49 231 286 79 0 chr6 95434518 95434581 -93844973 + MIR3 SINE MIR 93 160 -48 243 23 68 0 chr6 95435437 95435481 -93844073 + T-rich Low_complexity Low_complexity 4 50 0 315 330 67 25 chr6 95436913 95437198 -93842356 - HAL1 LINE L1 -828 1679 1383 523 218 103 118 chr6 95437211 95437350 -93842204 - L1MEd LINE L1 -4862 1257 1118 2510 149 9 21 chr6 95437350 95437780 -93841774 + MSTB LTR MaLR 1 425 -1 523 218 103 118 chr6 95437780 95437839 -93841715 - L1MEd LINE L1 -5001 1118 1060 522 83 0 0 chr6 95437839 95437911 -93841643 + (TA)n Simple_repeat Simple_repeat 2 73 0 523 218 103 118 chr6 95437911 95438059 -93841495 - L1MEd LINE L1 -5059 1060 915 1987 152 32 29 chr6 95438501 95438875 -93840679 - THE1C LTR MaLR 0 375 1 336 120 0 0 chr6 95440558 95440608 -93838946 + L1MC1 LINE L1 6034 6083 -250 2548 103 19 8 chr6 95440608 95440978 -93838576 - THE1C LTR MaLR 0 375 2 7559 144 68 28 chr6 95440979 95442481 -93837073 - THE1C-int LTR MaLR 0 1580 19 2211 144 30 11 chr6 95442497 95442865 -93836689 - THE1C LTR MaLR 0 375 1 1319 153 51 0 chr6 95442867 95443103 -93836451 + L1MC1 LINE L1 6081 6328 -5 2126 164 10 8 chr6 95444627 95445017 -93834537 - L1MC1 LINE L1 -18 6315 5925 3353 186 34 18 chr6 95445018 95446649 -93832905 + L1MC1 LINE L1 4199 5934 -399 269 270 0 67 chr6 95446837 95446926 -93832628 + MIR SINE MIR 19 101 -161 22 0 0 0 chr6 95446991 95447013 -93832541 + AT_rich Low_complexity Low_complexity 1 22 0 329 172 58 23 chr6 95447080 95447167 -93832387 - LTR67 LTR ERVL -2 555 466 345 345 73 18 chr6 95447305 95447525 -93832029 - LTR67 LTR ERVL -315 242 11 615 304 60 39 chr6 95448928 95449118 -93830436 - L1M4 LINE L1 -2259 3887 3702 6867 57 17 0 chr6 95449118 95450401 -93829153 - L1PA7 LINE L1 -4 6150 4864 615 304 60 39 chr6 95450401 95450747 -93828807 - L1M4 LINE L1 -2444 3702 3340 319 268 61 136 chr6 95451139 95451449 -93828105 - L1MEd LINE L1 -5587 532 246 263 246 56 42 chr6 95451540 95451608 -93827946 - L1MEd LINE L1 -5972 147 81 1659 166 10 42 chr6 95451608 95451915 -93827639 + AluJb SINE Alu 5 301 -11 263 246 56 42 chr6 95451915 95451988 -93827566 - L1MEd LINE L1 -6038 81 4 207 0 0 0 chr6 95452006 95452029 -93827525 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 359 273 105 41 chr6 95452155 95452327 -93827227 - MIR SINE MIR -8 254 72 2128 90 28 10 chr6 95453220 95453540 -93826014 - AluY SINE Alu 0 311 1 2320 135 104 12 chr6 95453812 95454234 -93825320 - LOR1b LTR ERV1 0 461 1 181 53 79 0 chr6 95454555 95454593 -93824961 + T-rich Low_complexity Low_complexity 2 42 0 231 146 124 34 chr6 95454758 95454847 -93824707 - LTR43 LTR ERV1 -15 587 491 3014 148 24 34 chr6 95455008 95455598 -93823956 - LTR60 LTR ERV1 -2 584 1 210 191 0 0 chr6 95455613 95455655 -93823899 + CT-rich Low_complexity Low_complexity 1 42 0 225 252 204 10 chr6 95456711 95456814 -93822740 + MIR SINE MIR 128 250 -12 341 307 10 20 chr6 95458752 95458853 -93820701 + MIR SINE MIR 42 141 -67 240 35 0 0 chr6 95459101 95459130 -93820424 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 399 377 76 14 chr6 95459577 95459800 -93819754 - MIR SINE MIR -13 249 13 243 0 0 0 chr6 95461640 95461667 -93817887 + (T)n Simple_repeat Simple_repeat 1 27 0 202 176 0 98 chr6 95462521 95462572 -93816982 - L2 LINE L2 -2 3270 3225 686 115 62 0 chr6 95464320 95464433 -93815121 - L1PB3 LINE L1 0 6154 6035 717 149 177 0 chr6 95464433 95464574 -93814980 - MER20 DNA MER1_type -21 198 33 2753 212 56 18 chr6 95464588 95465320 -93814234 - L1ME2 LINE L1 -80 6084 5325 859 173 22 127 chr6 95466220 95466544 -93813010 + L1MC5 LINE L1 6694 6983 -978 * 1041 229 76 47 chr6 95466542 95467027 -93812527 + L1MC5 LINE L1 7414 7912 -49 2710 163 10 2 chr6 95467237 95467722 -93811832 - Tigger1 DNA MER2_type -1929 489 1 185 318 91 0 chr6 95468370 95468436 -93811118 - MIR SINE MIR -171 91 20 1227 155 14 0 chr6 95468517 95468724 -93810830 + MER6B DNA MER2_type 1 210 0 791 147 16 0 chr6 95469580 95469709 -93809845 + FLAM_C SINE Alu 2 132 -1 244 303 14 48 chr6 95469882 95470027 -93809527 + MIR SINE MIR 74 213 -49 2708 181 75 7 chr6 95470110 95470719 -93808835 - L1MD2 LINE L1 -219 6140 5490 383 294 118 7 chr6 95471176 95471312 -93808242 + MIR3 SINE MIR 10 160 -48 745 247 62 0 chr6 95471312 95471490 -93808064 - MER5A DNA MER1_type 0 189 1 237 248 76 48 chr6 95471754 95471859 -93807695 + L1ME4a LINE L1 5981 6088 -33 7142 49 13 0 chr6 95474029 95475000 -93804554 - L1PA7 LINE L1 -5 6149 5174 204 159 0 23 chr6 95475163 95475207 -93804347 + T-rich Low_complexity Low_complexity 6 48 0 2234 104 0 7 chr6 95475258 95475555 -93803999 - AluSx SINE Alu -17 295 1 2266 103 3 0 chr6 95475825 95476127 -93803427 + AluSg SINE Alu 1 303 -7 22 0 0 0 chr6 95476444 95476466 -93803088 + AT_rich Low_complexity Low_complexity 1 22 0 379 301 60 44 chr6 95477065 95477248 -93802306 + MIR SINE MIR 11 196 -66 723 186 84 18 chr6 95477338 95477505 -93802049 - MER20 DNA MER1_type -40 179 2 1951 144 7 13 chr6 95477532 95477837 -93801717 - AluSx SINE Alu -9 303 1 251 328 107 23 chr6 95477988 95478119 -93801435 + L3 LINE CR1 1411 1552 -25 2643 109 27 59 chr6 95478236 95478711 -93800843 - LTR46 LTR ERV1 0 460 1 221 158 0 0 chr6 95480326 95480364 -93799190 + L2 LINE L2 3233 3270 -2 225 144 86 152 chr6 95480581 95480690 -93798864 - MIR SINE MIR -106 102 18 1975 117 46 3 chr6 95480837 95481120 -93798434 - AluSq SINE Alu -18 295 1 953 204 46 32 chr6 95481460 95481676 -93797878 - MER20 DNA MER1_type 0 219 1 512 300 100 25 chr6 95483009 95483249 -93796305 - L2 LINE L2 -1 3312 3055 2210 116 0 10 chr6 95485126 95485437 -93794117 - AluSx SINE Alu -4 308 1 207 0 0 0 chr6 95485451 95485474 -93794080 + (A)n Simple_repeat Simple_repeat 1 23 0 1740 114 32 82 chr6 95485526 95485841 -93793713 - AluSx SINE Alu -13 299 1 2085 136 30 12 chr6 95486340 95486671 -93792883 + MER1B DNA MER1_type 1 337 0 626 236 192 19 chr6 95487239 95487447 -93792107 + MIR SINE MIR 14 257 -5 247 361 46 0 chr6 95489351 95489459 -93790095 + L2 LINE L2 3156 3268 -4 554 318 84 17 chr6 95490912 95491151 -93788403 - MIR SINE MIR -2 260 6 1572 217 6 14 chr6 95491753 95492112 -93787442 + MLT1A1 LTR MaLR 10 365 0 21 0 0 0 chr6 95492892 95492913 -93786641 + AT_rich Low_complexity Low_complexity 1 21 0 592 176 97 12 chr6 95492913 95493078 -93786476 - L1MA7 LINE L1 -11 6280 6102 1004 118 0 0 chr6 95493080 95493215 -93786339 + AluSq/x SINE Alu 1 135 -177 2021 148 3 10 chr6 95493215 95493518 -93786036 + AluSx SINE Alu 1 301 -11 284 140 0 0 chr6 95493584 95493634 -93785920 + L1MA7 LINE L1 6009 6058 -233 1535 236 90 4 chr6 95493643 95494257 -93785297 - MER20B DNA MER1_type -74 709 1 297 314 17 59 chr6 95494275 95494393 -93785161 - MIR SINE MIR -75 133 21 1741 232 65 19 chr6 95494777 95495289 -93784265 - MER77 LTR ERV1 -7 598 64 358 267 171 28 chr6 95495553 95495770 -93783784 + L1MEd LINE L1 577 824 -5295 421 252 13 143 chr6 95496089 95496319 -93783235 + MIR SINE MIR 63 262 0 314 249 86 66 chr6 95496507 95496764 -93782790 - L3b LINE CR1 -174 1409 1148 732 195 5 87 chr6 95496929 95497124 -93782430 + MER58A DNA MER1_type 1 179 -45 2922 87 19 9 chr6 95497140 95497567 -93781987 + MLT2A1 LTR ERVL 14 444 0 950 271 87 51 chr6 95497681 95498153 -93781401 + L2 LINE L2 2824 3312 -1 641 135 81 0 chr6 95498930 95499041 -93780513 + MER5A DNA MER1_type 1 120 -69 526 188 146 0 chr6 95499044 95499188 -93780366 - MER31A LTR ERV1 0 485 321 2056 164 42 31 chr6 95499188 95499726 -93779828 - MLT2A2 LTR ERVL 0 554 1 1315 202 12 28 chr6 95499727 95500054 -93779500 - MER31B LTR ERV1 -144 322 1 243 240 0 0 chr6 95500077 95500127 -93779427 + MER5A DNA MER1_type 118 167 -22 856 178 54 38 chr6 95500564 95500749 -93778805 - MER5A DNA MER1_type -1 188 1 2490 113 8 26 chr6 95500824 95501205 -93778349 - THE1C LTR MaLR 0 375 2 676 224 31 19 chr6 95501355 95501516 -93778038 - MER63 DNA MER1_type -47 789 1 458 314 91 56 chr6 95501699 95501951 -93777603 + MIR SINE MIR 2 262 0 195 293 17 0 chr6 95501985 95502043 -93777511 - L2 LINE L2 -3 3269 3211 583 285 70 20 chr6 95502927 95503127 -93776427 + MIR SINE MIR 46 255 -7 900 125 14 35 chr6 95503469 95503613 -93775941 + FLAM_C SINE Alu 3 143 0 2054 130 74 79 chr6 95504952 95505382 -93774172 - MSTA LTR MaLR 0 428 1 209 222 0 0 chr6 95506076 95506121 -93773433 + A-rich Low_complexity Low_complexity 1 45 0 1328 263 93 28 chr6 95508365 95508552 -93771002 + L1MEd LINE L1 3 177 -5942 333 47 0 0 chr6 95508552 95508595 -93770959 + (TG)n Simple_repeat Simple_repeat 2 44 0 1328 263 93 28 chr6 95508595 95509346 -93770208 + L1MEd LINE L1 177 1028 -5091 265 319 118 4 chr6 95509745 95509974 -93769580 - ERVL LTR ERVL -468 5296 5042 401 334 87 25 chr6 95510015 95510338 -93769216 - ERVL LTR ERVL -716 4938 4596 609 331 87 18 chr6 95510411 95510906 -93768648 - ERVL LTR ERVL -988 4497 3969 585 348 105 26 chr6 95510969 95511702 -93767852 - ERVL LTR ERVL -1833 3821 3031 1350 315 59 20 chr6 95511771 95512069 -93767485 - ERVL LTR ERVL -2722 2932 2647 4422 162 39 30 chr6 95512069 95512927 -93766627 + MER6 DNA MER2_type 1 865 0 1350 315 59 20 chr6 95512927 95513471 -93766083 - ERVL LTR ERVL -3007 2647 2087 366 297 52 56 chr6 95513871 95514389 -93765165 + L1MEd LINE L1 1123 1638 -4996 346 288 197 0 chr6 95514406 95514538 -93765016 + MER5A DNA MER1_type 26 183 -6 262 294 8 31 chr6 95514539 95514674 -93764880 + L1MEd LINE L1 1516 1638 -4904 522 0 0 0 chr6 95514676 95514734 -93764820 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 254 263 142 29 chr6 95514735 95514975 -93764579 + L1MEd LINE L1 1840 2106 -4719 2964 115 30 15 chr6 95515248 95515777 -93763777 - L1MA3 LINE L1 0 7724 7188 * 32674 42 4 2 chr6 95515775 95520837 -93758717 - L1PA4 LINE L1 0 6155 1087 779 40 0 0 chr6 95520821 95520922 -93758632 - L1PA4 LINE L1 -6044 102 2 * 14886 159 24 13 chr6 95520923 95523474 -93756080 - L1MA3 LINE L1 -521 7203 4681 1790 154 47 7 chr6 95523474 95523772 -93755782 - AluJb SINE Alu 0 312 3 14886 159 24 13 chr6 95523772 95527247 -93752307 - L1MA3 LINE L1 -3043 4681 1106 464 156 104 0 chr6 95527255 95527351 -93752203 - L1MA3 LINE L1 -7437 128 23 31 26 0 0 chr6 95527356 95527394 -93752160 + AT_rich Low_complexity Low_complexity 1 38 0 2290 207 36 15 chr6 95527428 95528037 -93751517 - L1 LINE L1 -3117 3029 2408 * 4179 174 32 21 chr6 95528036 95529306 -93750248 + L1MB7 LINE L1 4891 6177 -7 1873 165 0 3 chr6 95529738 95530029 -93749525 - AluSx SINE Alu -22 290 1 726 262 6 0 chr6 95530029 95530197 -93749357 - MIR SINE MIR -3 259 91 307 255 20 0 chr6 95531292 95531394 -93748160 + MER70B LTR ERVL 458 561 -17 230 274 97 8 chr6 95531517 95531641 -93747913 - L1ME4a LINE L1 -43 6078 5944 * 8835 165 81 76 chr6 95531622 95532219 -93747335 - L1MC3 LINE L1 0 7970 7377 319 275 0 0 chr6 95532219 95532310 -93747244 - MLT1F1 LTR MaLR -442 125 35 8835 165 81 76 chr6 95532310 95533845 -93745709 - L1MC3 LINE L1 -593 7377 5851 1516 172 8 23 chr6 95533845 95534107 -93745447 + AluJo SINE Alu 1 258 -54 8835 165 81 76 chr6 95534107 95534333 -93745221 - L1MC3 LINE L1 -2119 5851 5628 2067 128 21 3 chr6 95534333 95534623 -93744931 - AluSx SINE Alu -17 295 1 8835 165 81 76 chr6 95534623 95534992 -93744562 - L1MC3 LINE L1 -2342 5628 5055 318 275 124 28 chr6 95534987 95535205 -93744349 - L1ME4a LINE L1 -137 5984 5746 * 373 256 156 25 chr6 95535384 95535544 -93744010 - L2 LINE L2 -47 3266 3086 1767 98 62 43 chr6 95535966 95536271 -93743283 + AluY SINE Alu 1 311 0 26 74 0 0 chr6 95537630 95537684 -93741870 + AT_rich Low_complexity Low_complexity 1 54 0 21 57 0 0 chr6 95537769 95537804 -93741750 + AT_rich Low_complexity Low_complexity 1 35 0 2076 147 83 5 chr6 95538066 95538461 -93741093 + MSTB LTR MaLR 1 426 0 2287 173 7 12 chr6 95538997 95539141 -93740413 + MLT1A1-int LTR MaLR 1315 1458 -277 2937 163 79 56 chr6 95539141 95539852 -93739702 + LTR8A LTR ERV1 1 727 0 2287 173 7 12 chr6 95539852 95540130 -93739424 + MLT1A1-int LTR MaLR 1458 1735 0 1706 168 39 36 chr6 95540131 95540494 -93739060 + MLT1A1 LTR MaLR 2 365 0 447 216 43 29 chr6 95541640 95541779 -93737775 + MER103 DNA DNA 16 156 -10 736 301 31 56 chr6 95542851 95543207 -93736347 - MLT1I LTR MaLR 0 409 63 1484 163 78 8 chr6 95544041 95544298 -93735256 + AluJo SINE Alu 1 275 -37 5310 48 0 0 chr6 95544382 95545030 -93734524 - L1PA8 LINE L1 -9 6163 5516 25 0 0 0 chr6 95545055 95545080 -93734474 + AT_rich Low_complexity Low_complexity 1 25 0 2303 39 0 0 chr6 95545080 95545359 -93734195 - L1PA4 LINE L1 -3 6152 5874 1870 234 67 24 chr6 95545592 95545701 -93733853 - L1MC4 LINE L1 -142 7900 7797 1993 151 10 61 chr6 95545701 95545992 -93733562 - MLT1B LTR MaLR 0 390 125 2261 109 0 0 chr6 95545992 95546286 -93733268 - AluSg SINE Alu -8 302 9 1993 151 10 61 chr6 95546286 95546405 -93733149 - MLT1B LTR MaLR -265 125 1 1870 234 67 24 chr6 95546405 95546581 -93732973 - L1MC4 LINE L1 -245 7797 7630 315 0 0 0 chr6 95546581 95546616 -93732938 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1870 234 67 24 chr6 95546616 95546944 -93732610 - L1MC4 LINE L1 -412 7630 7260 2039 205 108 24 chr6 95547001 95547389 -93732165 - L1MC4 LINE L1 -1004 7038 6591 351 0 0 0 chr6 95547389 95547428 -93732126 + (CA)n Simple_repeat Simple_repeat 2 40 0 2039 205 108 24 chr6 95547428 95547575 -93731979 - L1MC4 LINE L1 -1451 6591 6458 192 125 0 0 chr6 95550226 95550258 -93729296 + (T)n Simple_repeat Simple_repeat 1 32 0 1313 194 0 24 chr6 95550260 95550508 -93729046 - AluJb SINE Alu -70 242 1 210 114 45 0 chr6 95550523 95550567 -93728987 + (TA)n Simple_repeat Simple_repeat 2 47 0 566 249 111 0 chr6 95550618 95550812 -93728742 - MIR SINE MIR -4 258 44 1133 121 0 0 chr6 95551224 95551397 -93728157 - MER2 DNA MER2_type -172 173 1 520 283 119 40 chr6 95553153 95553494 -93726060 + MLT1J1 LTR MaLR 67 439 -11 997 180 22 6 chr6 95553494 95553677 -93725877 + MER5A DNA MER1_type 1 186 -3 623 356 59 16 chr6 95553722 95554093 -93725461 + L2 LINE L2 274 660 -2654 1313 341 141 13 chr6 95554099 95555181 -93724373 + L2 LINE L2 1649 2869 -445 273 253 63 0 chr6 95555183 95555262 -93724292 + MIR SINE MIR 70 153 -109 428 95 50 53 chr6 95555775 95556105 -93723449 + (TA)n Simple_repeat Simple_repeat 1 329 0 6826 61 5 3 chr6 95556105 95557581 -93721973 - L1PA7 LINE L1 -12 6142 4664 25 0 0 0 chr6 95558053 95558078 -93721476 + AT_rich Low_complexity Low_complexity 1 25 0 2180 116 7 3 chr6 95559908 95560202 -93719352 - AluSg SINE Alu -13 297 3 256 293 0 0 chr6 95560410 95560468 -93719086 - L2 LINE L2 -11 3261 3204 285 73 0 0 chr6 95560700 95560741 -93718813 + Alu SINE Alu 257 297 -5 2125 114 7 0 chr6 95560805 95561107 -93718447 + AluSx SINE Alu 1 304 0 4506 218 67 11 chr6 95561107 95562357 -93717197 + Charlie1 DNA MER1_type 1442 2761 0 2467 92 0 6 chr6 95562592 95562906 -93716648 + AluSq SINE Alu 1 312 -1 29141 114 14 65 chr6 95562917 95566424 -93713130 + L1PA7 LINE L1 12 3048 -3106 1605 101 0 40 chr6 95566424 95566651 -93712903 + AluY SINE Alu 1 218 -93 29141 114 14 65 chr6 95566651 95569392 -93710162 + L1PA7 LINE L1 3048 5927 -227 6776 63 14 12 chr6 95619392 95621205 -93658349 - L1PA8 LINE L1 -3 6169 4355 6753 67 9 14 chr6 95621640 95622269 -93657285 + L1PA8 LINE L1 5027 5652 -520 8952 45 1 5 chr6 95622269 95623342 -93656212 + MER11C LTR ERVK 1 1069 -2 6753 67 9 14 chr6 95623342 95623861 -93655693 + L1PA8 LINE L1 5652 6172 0 937 125 0 6 chr6 95623862 95624030 -93655524 + L1PA15-16 LINE L1 2134 2300 -4549 * 4034 216 48 11 chr6 95624027 95625173 -93654381 + L1MB2 LINE L1 3018 4205 -1941 810 169 7 0 chr6 95625173 95625327 -93654227 - L1P5 LINE L1 -347 5809 5655 847 271 115 43 chr6 95625601 95625992 -93653562 - L2 LINE L2 -4 3309 2891 700 250 94 9 chr6 95626357 95626569 -93652985 + MIR SINE MIR 3 232 -30 214 204 114 0 chr6 95627224 95627268 -93652286 - MIR SINE MIR -15 247 199 19300 88 12 1 chr6 95627418 95630927 -93648627 - L1PA7 LINE L1 -3 6151 2611 296 94 0 19 chr6 95631079 95631132 -93648422 + Alu SINE Alu 247 298 -2 1736 143 65 7 chr6 95631288 95631582 -93647972 + AluSx SINE Alu 1 311 -1 306 272 12 0 chr6 95633016 95633097 -93646457 - MIR3 SINE MIR -5 203 122 421 258 72 14 chr6 95633104 95633253 -93646301 - MER20B DNA MER1_type -4 215 56 209 299 149 47 chr6 95633374 95633481 -93646073 - MER5A DNA MER1_type -6 183 66 839 209 6 23 chr6 95633481 95633653 -93645901 - FRAM SINE Alu -10 166 1 306 269 0 0 chr6 95633653 95633720 -93645834 - MER5A DNA MER1_type -114 75 9 402 350 52 21 chr6 95634654 95634980 -93644574 - LTR16C LTR ERVL 0 491 156 1588 197 5 50 chr6 95635398 95635840 -93643714 + L1MB2 LINE L1 4909 5330 -816 1473 187 6 55 chr6 95635950 95636293 -93643261 - MLT1B LTR MaLR -62 328 3 3298 163 56 15 chr6 95636296 95636970 -93642584 + L1MB2 LINE L1 5468 6169 -2 471 352 77 4 chr6 95638087 95638360 -93641194 + L3 LINE CR1 1081 1373 -204 2038 214 50 58 chr6 95638565 95639009 -93640545 + MLT1E LTR MaLR 1 440 -153 1769 180 3 10 chr6 95639009 95639309 -93640245 - AluJb SINE Alu -14 298 1 2038 214 50 58 chr6 95639309 95639462 -93640092 + MLT1E LTR MaLR 440 593 0 279 233 214 19 chr6 95639530 95639633 -93639921 - L2 LINE L2 -1 3312 3190 706 121 0 0 chr6 95640265 95640364 -93639190 - AluSg/x SINE Alu -120 192 94 439 306 131 10 chr6 95640762 95640968 -93638586 - MIR SINE MIR -7 255 25 211 316 35 0 chr6 95641068 95641125 -93638429 + L3 LINE CR1 1423 1481 -96 1111 281 141 47 chr6 95642133 95642924 -93636630 + L2 LINE L2 2205 2920 -393 189 0 0 0 chr6 95642924 95642945 -93636609 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2064 128 4 0 chr6 95642948 95643229 -93636325 - AluSx SINE Alu -30 282 1 1111 281 141 47 chr6 95643229 95643431 -93636123 + L2 LINE L2 2921 3307 -6 487 161 25 0 chr6 95643757 95643838 -93635716 + MER67A LTR ERV1 1 83 -460 1751 210 37 17 chr6 95643870 95644483 -93635071 + MER67B LTR ERV1 29 514 0 327 265 92 101 chr6 95644821 95645059 -93634495 - L2 LINE L2 -976 2338 2103 2050 190 33 24 chr6 95645189 95645557 -93633997 - MLT1C LTR MaLR 0 467 93 2362 168 39 5 chr6 95645557 95645969 -93633585 - MSTB LTR MaLR 0 426 1 2050 190 33 24 chr6 95645969 95646052 -93633502 - MLT1C LTR MaLR -374 93 12 403 305 144 39 chr6 95646859 95647164 -93632390 - L2 LINE L2 -1197 2117 1781 318 274 140 17 chr6 95647117 95647296 -93632258 + MIR SINE MIR 8 208 -54 * 603 206 0 53 chr6 95648136 95648267 -93631287 - FLAM_A SINE Alu -18 124 1 2203 65 25 0 chr6 95648334 95648662 -93630892 + AluY SINE Alu 1 335 0 1501 158 60 21 chr6 95648662 95649070 -93630484 - MER67C LTR ERV1 -13 501 175 682 141 94 0 chr6 95649092 95649220 -93630334 + MER3 DNA MER1_type 70 209 0 268 327 20 10 chr6 95649335 95649436 -93630118 + MIR SINE MIR 155 256 -6 182 36 0 36 chr6 95650506 95650534 -93629020 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1535 177 25 11 chr6 95651134 95651411 -93628143 + AluJb SINE Alu 1 281 -31 1770 189 0 0 chr6 95651700 95652002 -93627552 + AluJb SINE Alu 1 302 -10 2347 89 3 0 chr6 95652222 95652515 -93627039 + AluY SINE Alu 1 294 -17 424 253 133 66 chr6 95652861 95653027 -93626527 - L3 LINE CR1 -1 1576 1400 193 316 140 35 chr6 95653022 95653136 -93626418 + MIR SINE MIR 5 130 -132 * 203 239 22 0 chr6 95653256 95653302 -93626252 - L3 LINE CR1 -193 1384 1338 * 392 292 134 46 chr6 95653299 95653583 -93625971 - L2 LINE L2 0 3313 3005 * 1062 292 152 43 chr6 95653563 95654042 -93625512 - L3 LINE CR1 -211 1366 800 2011 125 10 10 chr6 95654042 95654339 -93625215 - AluSx SINE Alu -15 297 1 1062 292 152 43 chr6 95654339 95654489 -93625065 - L3 LINE CR1 -777 800 668 344 339 34 0 chr6 95654691 95654809 -93624745 - L3 LINE CR1 -892 685 564 231 369 48 24 chr6 95655854 95655938 -93623616 - L2 LINE L2 -48 3224 3139 365 247 0 35 chr6 95656097 95656182 -93623372 + L2 LINE L2 3191 3272 0 369 0 0 0 chr6 95656343 95656384 -93623170 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2334 45 45 6 chr6 95656385 95656699 -93622855 - LTR17 LTR ERV1 -454 326 1 2174 76 3 0 chr6 95656699 95656990 -93622564 - HERV17 LTR ERV1 0 8626 8335 27811 50 9 2 chr6 95657012 95660575 -93618979 - HERV17 LTR ERV1 -2607 6019 2431 14382 68 36 3 chr6 95660565 95662511 -93617043 - HERV17 LTR ERV1 -6616 2010 1 * 3393 101 44 4 chr6 95662511 95663016 -93616538 - LTR17 LTR ERV1 0 780 256 394 183 231 0 chr6 95663044 95663148 -93616406 + L2 LINE L2 3183 3310 -3 7752 18 23 0 chr6 95664193 95665120 -93614434 - L1PA3 LINE L1 0 6155 5225 15519 30 0 0 chr6 95665121 95667082 -93612472 + L1P LINE L1 2273 4233 -1913 22 35 0 0 chr6 95667675 95667704 -93611850 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr6 95668091 95668121 -93611433 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr6 95668475 95668495 -93611059 + (T)n Simple_repeat Simple_repeat 1 20 0 565 190 0 0 chr6 95668596 95668696 -93610858 + FLAM_C SINE Alu 30 129 -14 2240 96 3 3 chr6 95668745 95669048 -93610506 - AluSx SINE Alu -9 303 1 676 281 40 35 chr6 95669213 95669562 -93609992 + MLT1G LTR MaLR 8 356 -199 201 39 0 0 chr6 95669562 95669588 -93609966 + (GA)n Simple_repeat Simple_repeat 2 27 0 676 281 40 35 chr6 95669588 95669790 -93609764 + MLT1G LTR MaLR 356 555 0 2203 123 7 0 chr6 95670220 95670530 -93609024 - AluSx SINE Alu 0 312 1 241 301 183 0 chr6 95670682 95670775 -93608779 - MIR SINE MIR -141 121 12 245 274 32 0 chr6 95671161 95671223 -93608331 + L2 LINE L2 3249 3312 -1 387 109 0 0 chr6 95671290 95671345 -93608209 - MIR SINE MIR -10 252 198 411 242 76 15 chr6 95671376 95671508 -93608046 + L2 LINE L2 3170 3309 -4 591 247 108 0 chr6 95671516 95671674 -93607880 - MIR SINE MIR -65 197 23 320 167 33 0 chr6 95671674 95671734 -93607820 + MLT1C LTR MaLR 1 62 -405 1899 163 0 29 chr6 95671757 95672064 -93607490 - AluJb SINE Alu -14 298 1 2071 122 4 0 chr6 95672171 95672449 -93607105 + AluSx SINE Alu 1 279 -33 382 202 101 0 chr6 95672896 95673005 -93606549 + MER3 DNA MER1_type 49 168 -41 857 173 45 0 chr6 95673008 95673187 -93606367 + MER3 DNA MER1_type 2235 2421 0 22 0 0 0 chr6 95673803 95673825 -93605729 + AT_rich Low_complexity Low_complexity 1 22 0 188 270 48 0 chr6 95674522 95674585 -93604969 - MIR SINE MIR -95 167 102 559 78 0 0 chr6 95674699 95674776 -93604778 + AluS SINE Alu 1 77 -236 477 276 179 81 chr6 95675469 95676026 -93603528 + L1M2 LINE L1 773 1384 -5465 264 30 0 0 chr6 95676560 95676593 -93602961 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2267 71 0 0 chr6 95677489 95677794 -93601760 - AluY SINE Alu 0 305 1 2114 143 3 3 chr6 95678739 95679046 -93600508 - AluSx SINE Alu -5 307 1 199 333 33 0 chr6 95679098 95679158 -93600396 + L2 LINE L2 3209 3270 -2 916 184 184 21 chr6 95680660 95680899 -93598655 - MSTD LTR MaLR -118 278 1 2756 75 13 11 chr6 95681066 95681440 -93598114 + THE1C LTR MaLR 1 375 0 1304 147 106 70 chr6 95681473 95681777 -93597777 + AluJo SINE Alu 1 314 0 882 154 19 12 chr6 95681898 95682060 -93597494 + MLT1B LTR MaLR 225 387 -3 392 221 12 0 chr6 95682120 95682206 -93597348 - MER99 DNA DNA -239 589 503 2665 237 55 74 chr6 95682209 95682664 -93596890 - L1MDb LINE L1 -3951 2455 1993 1674 160 48 4 chr6 95682664 95682932 -93596622 - AluJb SINE Alu -15 297 18 2665 237 55 74 chr6 95682932 95682951 -93596603 - L1MDb LINE L1 -4413 1993 1975 1702 204 13 0 chr6 95682951 95683259 -93596295 - AluJb SINE Alu 0 312 1 2665 237 55 74 chr6 95683259 95684499 -93595055 - L1MDb LINE L1 -4431 1975 796 576 135 45 0 chr6 95685720 95685831 -93593723 + LTR9B LTR ERV1 445 560 -84 286 60 12 84 chr6 95685832 95685915 -93593639 + (CAAAAA)n Simple_repeat Simple_repeat 2 78 0 238 266 18 71 chr6 95685926 95686039 -93593515 + L2 LINE L2 3207 3313 0 763 262 107 77 chr6 95686204 95686408 -93593146 - MLT1J LTR MaLR 0 511 315 2232 121 0 0 chr6 95686408 95686705 -93592849 + AluSx SINE Alu 1 297 -15 763 262 107 77 chr6 95686705 95686996 -93592558 - MLT1J LTR MaLR -196 315 1 256 347 120 55 chr6 95687633 95688114 -93591440 + L2 LINE L2 2749 3254 -18 1439 201 137 58 chr6 95688125 95688607 -93590947 + MLT2B1 LTR ERVL 1 520 0 554 220 39 58 chr6 95688771 95689030 -93590524 - Charlie4 DNA MER1_type -5 1956 1703 2177 96 0 3 chr6 95689097 95689423 -93590131 + AluSc SINE Alu 1 325 0 1380 190 60 26 chr6 95689432 95689730 -93589824 + AluJo SINE Alu 6 312 0 666 189 107 37 chr6 95689736 95689864 -93589690 - Charlie4 DNA MER1_type -1678 283 165 1880 144 3 23 chr6 95689864 95690169 -93589385 - AluJb SINE Alu -13 299 1 666 189 107 37 chr6 95690169 95690284 -93589270 - Charlie4 DNA MER1_type -1796 165 23 399 239 11 0 chr6 95690824 95690912 -93588642 + MER20 DNA MER1_type 128 216 -3 21 0 0 0 chr6 95692152 95692173 -93587381 + AT_rich Low_complexity Low_complexity 1 21 0 1662 207 0 6 chr6 95692635 95692949 -93586605 - AluJo SINE Alu 0 312 1 24 0 0 0 chr6 95693176 95693200 -93586354 + AT_rich Low_complexity Low_complexity 1 24 0 31 58 0 0 chr6 95693331 95693383 -93586171 + AT_rich Low_complexity Low_complexity 1 52 0 1224 142 0 25 chr6 95693489 95693686 -93585868 + AluJb SINE Alu 26 217 -95 1675 189 78 10 chr6 95693796 95694204 -93585350 - L1ME1 LINE L1 -18 6148 5713 293 250 10 77 chr6 95694311 95694415 -93585139 - L2 LINE L2 -5 3308 3212 2255 74 46 0 chr6 95695396 95695679 -93583875 - AluSg SINE Alu -14 296 1 22 35 0 0 chr6 95696436 95696465 -93583089 + AT_rich Low_complexity Low_complexity 1 29 0 452 234 62 21 chr6 95696560 95696705 -93582849 - L2 LINE L2 -5 3308 3158 1930 177 17 8 chr6 95697518 95697880 -93581674 - MLT1A1 LTR MaLR 0 365 1 276 270 0 40 chr6 95698671 95698745 -93580809 - MIR SINE MIR -108 154 84 194 343 30 15 chr6 95699459 95699526 -93580028 + MIR SINE MIR 31 98 -164 284 309 31 10 chr6 95699595 95699692 -93579862 + MIR SINE MIR 97 195 -67 1132 254 43 24 chr6 95699730 95699770 -93579784 - MLT2D LTR ERVL -1 413 375 303 28 0 0 chr6 95699770 95699806 -93579748 + (TG)n Simple_repeat Simple_repeat 1 36 0 1132 254 43 24 chr6 95699806 95700135 -93579419 - MLT2D LTR ERVL -39 375 37 1865 179 13 55 chr6 95700137 95700297 -93579257 + MLT1A1 LTR MaLR 1 166 -199 12951 94 11 6 chr6 95700297 95700754 -93578800 + L1PA8 LINE L1 3503 3956 -2216 2743 13 0 0 chr6 95700754 95701052 -93578502 + AluYa5 SINE Alu 1 298 -13 12951 94 11 6 chr6 95701052 95703288 -93576266 + L1PA8 LINE L1 3956 6172 0 1865 179 13 55 chr6 95703288 95703508 -93576046 + MLT1A1 LTR MaLR 166 365 0 9676 157 15 18 chr6 95703509 95705142 -93574412 - ERVL-D LTR ERVL -29 5735 4108 275 287 172 11 chr6 95705327 95705414 -93574140 - L2 LINE L2 -17 3296 3196 22 0 0 0 chr6 95705414 95705436 -93574118 + AT_rich Low_complexity Low_complexity 1 22 0 988 177 0 0 chr6 95705436 95705594 -93573960 - FRAM SINE Alu -26 150 1 1477 248 103 48 chr6 95705627 95706282 -93573272 - L2 LINE L2 -142 3171 2468 1634 152 191 6 chr6 95706285 95706646 -93572908 - MSTA LTR MaLR 0 428 1 695 215 51 0 chr6 95706646 95706823 -93572731 - L2 LINE L2 -1217 2097 1912 962 83 16 0 chr6 95707481 95707602 -93571952 + AluSx SINE Alu 3 125 -187 1223 84 0 24 chr6 95707723 95707923 -93571631 + AluSx SINE Alu 120 315 0 246 195 0 0 chr6 95707923 95707964 -93571590 + AluSq/x SINE Alu 135 175 -125 423 40 0 0 chr6 95707964 95708014 -93571540 - AluSg/x SINE Alu -196 114 65 1357 128 5 0 chr6 95708014 95708210 -93571344 - AluSg SINE Alu -113 197 1 22 0 0 0 chr6 95708596 95708618 -93570936 + AT_rich Low_complexity Low_complexity 1 22 0 6144 141 22 39 chr6 95708618 95710542 -93569012 - L1MA8 LINE L1 -5 6286 4405 1729 153 36 11 chr6 95710542 95710817 -93568737 - AluSx SINE Alu -26 286 5 6144 141 22 39 chr6 95710817 95711097 -93568457 - L1MA8 LINE L1 -1886 4405 4122 2403 94 0 0 chr6 95711126 95711424 -93568130 + AluSc SINE Alu 1 298 -11 2126 128 10 0 chr6 95711513 95711819 -93567735 + AluSx SINE Alu 1 309 -3 955 169 0 0 chr6 95712445 95712629 -93566925 - L1MA4 LINE L1 -4 6296 6113 32 75 0 0 chr6 95712792 95712859 -93566695 + AT_rich Low_complexity Low_complexity 1 67 0 859 266 78 30 chr6 95714863 95715224 -93564330 - L2 LINE L2 -110 3203 2826 227 247 12 49 chr6 95715235 95715316 -93564238 + MER4D LTR ERV1 759 836 -36 766 265 41 45 chr6 95715316 95715584 -93563970 - L2 LINE L2 -573 2741 2475 525 305 45 0 chr6 95715566 95715720 -93563834 + MIR SINE MIR 7 167 -95 * 280 190 127 0 chr6 95715866 95715945 -93563609 + MER46C DNA MER2_type 114 202 -136 219 225 0 0 chr6 95715958 95716029 -93563525 + (TA)n Simple_repeat Simple_repeat 1 71 0 341 185 98 11 chr6 95716089 95716181 -93563373 + L1MC4 LINE L1 7928 8027 -15 1842 140 35 11 chr6 95717771 95718056 -93561498 - AluSx SINE Alu -20 292 1 204 301 62 44 chr6 95718293 95718406 -93561148 + MIR SINE MIR 148 262 0 1750 167 10 14 chr6 95718514 95718808 -93560746 + AluJb SINE Alu 1 293 -19 313 321 60 15 chr6 95718820 95718954 -93560600 - L2 LINE L2 -913 2401 2262 1469 184 88 23 chr6 95719876 95720219 -93559335 - MLT1A1 LTR MaLR 0 365 1 795 296 98 27 chr6 95721648 95721945 -93557609 + L3 LINE CR1 1019 1336 -241 3763 124 61 11 chr6 95721950 95722928 -93556626 + L1PA16 LINE L1 4829 5857 -309 192 273 55 0 chr6 95723635 95723690 -93555864 - MIR SINE MIR -119 89 32 276 167 0 0 chr6 95723694 95723742 -93555812 - MLT2D LTR ERVL 0 464 417 210 143 0 0 chr6 95723743 95723778 -93555776 + (TATG)n Simple_repeat Simple_repeat 4 38 0 1441 182 48 0 chr6 95723778 95724084 -93555470 - MLT2D LTR ERVL -40 357 1 499 284 122 55 chr6 95724562 95725149 -93554405 - L2 LINE L2 -1 3312 2613 653 71 0 0 chr6 95725420 95725504 -93554050 + AluY SINE Alu 216 299 -12 26 0 0 0 chr6 95725690 95725716 -93553838 + AT_rich Low_complexity Low_complexity 1 26 0 247 352 194 37 chr6 95725958 95726659 -93552895 + L2 LINE L2 2067 2877 -437 213 146 0 36 chr6 95726920 95726971 -93552583 + MIR SINE MIR 100 145 -63 192 152 0 0 chr6 95728208 95728241 -93551313 + A-rich Low_complexity Low_complexity 1 33 0 30 0 0 0 chr6 95729253 95729283 -93550271 + AT_rich Low_complexity Low_complexity 1 30 0 4478 227 133 44 chr6 95729494 95730066 -93549488 - Charlie2a DNA MER1_type -786 2076 1556 1811 162 0 16 chr6 95730066 95730381 -93549173 - AluSx SINE Alu -2 310 1 1913 140 44 0 chr6 95730383 95730676 -93548878 - AluSq SINE Alu -7 306 1 4478 227 133 44 chr6 95730676 95730985 -93548569 - Charlie2a DNA MER1_type -1306 1556 1276 10275 111 31 6 chr6 95730985 95733290 -93546264 + L1PA10 LINE L1 3832 6164 -4 4478 227 133 44 chr6 95733290 95733382 -93546172 - Charlie2a DNA MER1_type -1586 1276 1194 1838 115 68 0 chr6 95733382 95733661 -93545893 + AluSg SINE Alu 1 298 -12 4478 227 133 44 chr6 95733661 95734557 -93544997 - Charlie2a DNA MER1_type -1668 1194 35 743 280 33 9 chr6 95734564 95734775 -93544779 - MLT1H1 LTR MaLR -339 216 1 353 303 125 7 chr6 95734776 95734928 -93544626 - L2 LINE L2 -32 3281 3112 183 308 223 54 chr6 95736754 95737014 -93542540 - L3b LINE CR1 -167 1416 1113 624 14 0 0 chr6 95737173 95737246 -93542308 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 503 198 0 0 chr6 95737259 95737355 -93542199 - AluJb SINE Alu -15 297 202 325 80 0 0 chr6 95737836 95737886 -93541668 + L1PA7 LINE L1 6104 6153 -1 10652 110 33 19 chr6 95738462 95740129 -93539425 + Tigger1 DNA MER2_type 1 1691 -727 224 241 17 0 chr6 95740356 95740414 -93539140 + CT-rich Low_complexity Low_complexity 3 61 0 309 365 8 80 chr6 95740432 95740670 -93538884 - L2 LINE L2 -85 3187 2967 453 188 0 0 chr6 95741242 95741322 -93538232 - AluJ/FLAM SINE Alu -232 80 1 2239 102 0 3 chr6 95741506 95741801 -93537753 + AluSq SINE Alu 1 294 -19 1022 249 195 0 chr6 95742014 95742139 -93537415 + L1MC4 LINE L1 6458 6557 -1485 362 21 21 0 chr6 95742139 95742186 -93537368 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 1022 249 195 0 chr6 95742186 95742450 -93537104 + L1MC4 LINE L1 6557 6923 -1119 3484 57 11 7 chr6 95742453 95742895 -93536659 - MLT2A1 LTR ERVL 0 444 1 30492 77 12 2 chr6 95742895 95747678 -93531876 - HERVL-A1 LTR ERVL 0 5654 844 1040 166 9 14 chr6 95747678 95747889 -93531665 + SVA Other Other 468 677 -709 6224 66 0 0 chr6 95748031 95748846 -93530708 - HERVL-A2 LTR ERVL -4839 815 1 311 0 0 0 chr6 95748846 95748882 -93530672 - MLT2A2 LTR ERVL 0 453 418 3353 61 40 0 chr6 95748885 95748925 -93530629 - MLT2A1 LTR ERVL 0 444 407 351 0 0 0 chr6 95748925 95748964 -93530590 + (TA)n Simple_repeat Simple_repeat 2 40 0 306 0 0 0 chr6 95748963 95748997 -93530557 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 3353 61 40 0 chr6 95748964 95749383 -93530171 - MLT2A1 LTR ERVL -37 407 1 1961 227 77 6 chr6 95749383 95750150 -93529404 + L1MC4 LINE L1 6922 7902 -140 460 165 11 0 chr6 95751555 95751646 -93527908 + L1PB4 LINE L1 6064 6155 -1 30 0 0 0 chr6 95751704 95751734 -93527820 + AT_rich Low_complexity Low_complexity 1 30 0 265 308 95 98 chr6 95752053 95752378 -93527176 - L2 LINE L2 -10 3303 2980 * 1145 259 48 32 chr6 95752363 95752468 -93527086 - L2 LINE L2 -1012 2302 2200 1989 129 7 17 chr6 95752468 95752762 -93526792 + AluSx SINE Alu 1 291 -21 1145 259 48 32 chr6 95752762 95753031 -93526523 - L2 LINE L2 -1114 2200 1922 796 173 33 103 chr6 95753035 95753307 -93526247 + L1MC5 LINE L1 6714 6966 -995 1398 210 63 40 chr6 95753346 95753823 -93525731 + L1MC5 LINE L1 6957 7444 -517 230 278 33 11 chr6 95753897 95753987 -93525567 + L1ME3A LINE L1 5962 6053 -117 31 44 0 0 chr6 95754482 95754527 -93525027 + AT_rich Low_complexity Low_complexity 1 45 0 31 44 0 0 chr6 95754889 95754934 -93524620 + AT_rich Low_complexity Low_complexity 1 45 0 193 277 170 27 chr6 95755759 95755871 -93523683 - MIR SINE MIR -131 131 4 650 235 0 0 chr6 95756070 95756189 -93523365 - FLAM_C SINE Alu -19 124 6 261 0 0 0 chr6 95756306 95756335 -93523219 + (T)n Simple_repeat Simple_repeat 1 29 0 1863 143 3 70 chr6 95756519 95756847 -93522707 + AluJo SINE Alu 1 306 -6 286 171 0 0 chr6 95757077 95757118 -93522436 + L2 LINE L2 3214 3254 -18 26 0 0 0 chr6 95758207 95758233 -93521321 + AT_rich Low_complexity Low_complexity 1 26 0 2258 103 16 10 chr6 95758292 95758603 -93520951 - AluSq SINE Alu 0 313 1 21 71 0 0 chr6 95759289 95759331 -93520223 + AT_rich Low_complexity Low_complexity 1 42 0 419 389 20 15 chr6 95759333 95759536 -93520018 + MIR3 SINE MIR 4 207 -1 191 272 12 25 chr6 95759556 95759637 -93519917 - MIR SINE MIR 0 262 183 385 318 18 0 chr6 95759648 95759758 -93519796 - L2 LINE L2 -1 3312 3201 2346 95 0 10 chr6 95760052 95760358 -93519196 + AluSg SINE Alu 1 303 -7 204 40 0 0 chr6 95760362 95760387 -93519167 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 27 0 0 0 chr6 95761421 95761448 -93518106 + AT_rich Low_complexity Low_complexity 1 27 0 803 200 7 13 chr6 95762142 95762297 -93517257 + AluJb SINE Alu 136 289 -23 46 33 0 0 chr6 95762297 95762357 -93517197 + AT_rich Low_complexity Low_complexity 1 60 0 2034 101 11 0 chr6 95762393 95762705 -93516849 - AluY SINE Alu 0 315 1 988 193 0 6 chr6 95762707 95762878 -93516676 - AluJb SINE Alu -14 298 129 1363 165 0 56 chr6 95763001 95763268 -93516286 - AluJo SINE Alu -12 300 49 2705 81 25 49 chr6 95763997 95764323 -93515231 + L1MA4A LINE L1 5864 6178 -125 2072 125 14 0 chr6 95764323 95764620 -93514934 + AluSp SINE Alu 1 301 -12 2705 81 25 49 chr6 95764620 95764740 -93514814 + L1MA4A LINE L1 6178 6299 -4 182 396 63 0 chr6 95764751 95764862 -93514692 - L2 LINE L2 -22 3250 3133 2540 120 39 31 chr6 95764963 95765626 -93513928 - MER51A LTR ERV1 -36 598 1 513 260 94 44 chr6 95765856 95766037 -93513517 - MER77 LTR ERV1 -7 598 407 198 0 0 0 chr6 95766156 95766178 -93513376 + (ATTG)n Simple_repeat Simple_repeat 1 22 0 358 227 376 0 chr6 95766671 95766812 -93512742 + MIR SINE MIR 59 252 -10 248 328 78 21 chr6 95766916 95767248 -93512306 + L1M4 LINE L1 4015 4365 -1781 186 43 0 0 chr6 95767311 95767334 -93512220 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 41278 29 21 1 chr6 95767334 95773354 -93506200 - L1HS LINE L1 -11 6144 1 22 35 0 0 chr6 95774365 95774394 -93505160 + AT_rich Low_complexity Low_complexity 1 29 0 4422 130 9 4 chr6 95774394 95775085 -93504469 - L1PB3 LINE L1 -1 6153 5460 2191 147 13 8 chr6 95775488 95775695 -93503859 - MLT1B LTR MaLR -8 382 171 2418 82 3 0 chr6 95775695 95775999 -93503555 - AluSg1 SINE Alu -4 305 1 2191 147 13 8 chr6 95775999 95776171 -93503383 - MLT1B LTR MaLR -219 171 1 288 271 0 14 chr6 95776766 95776836 -93502718 + MER5A DNA MER1_type 38 106 -83 1666 172 25 35 chr6 95777187 95777501 -93502053 + AluJo SINE Alu 1 311 -1 232 209 36 36 chr6 95777547 95777657 -93501897 + L1P LINE L1 5320 5429 -722 317 292 48 18 chr6 95778001 95778169 -93501385 + L1ME4a LINE L1 5946 6118 -3 22 35 0 0 chr6 95778172 95778201 -93501353 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr6 95778773 95778811 -93500743 + AT_rich Low_complexity Low_complexity 1 38 0 28285 115 12 66 chr6 95778837 95779329 -93500225 - L1PA7 LINE L1 -3 6151 5634 8952 45 1 5 chr6 95779329 95780402 -93499152 - MER11C LTR ERVK -2 1069 1 28285 115 12 66 chr6 95780402 95783789 -93495765 - L1PA7 LINE L1 -520 5634 2778 197 33 33 0 chr6 95783789 95783819 -93495735 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 28285 115 12 66 chr6 95783819 95786444 -93493110 - L1PA7 LINE L1 -3376 2778 13 265 250 50 0 chr6 95786912 95786992 -93492562 + MER94 DNA DNA 19 102 -32 260 232 66 24 chr6 95787068 95787160 -93492394 - MLT1H LTR MaLR -29 520 442 180 184 0 0 chr6 95787942 95787991 -93491563 + T-rich Low_complexity Low_complexity 1 49 0 7875 14 0 0 chr6 95787992 95789630 -93489924 - L1PA3 LINE L1 -2 6153 4516 3029 21 0 3 chr6 95789630 95790008 -93489546 + L1PA3 LINE L1 4141 4517 -1629 230 276 129 17 chr6 95790179 95790295 -93489259 - MLT1-int LTR MaLR -827 544 416 23 0 0 0 chr6 95790337 95790360 -93489194 + AT_rich Low_complexity Low_complexity 1 23 0 1917 234 16 16 chr6 95790374 95790946 -93488608 - L1M4 LINE L1 -1646 4500 3929 1909 152 3 22 chr6 95791375 95791690 -93487864 - AluSc SINE Alu 0 309 1 236 204 111 0 chr6 95791798 95791852 -93487702 - MIR SINE MIR -107 155 96 2279 136 68 10 chr6 95792561 95792973 -93486581 - Tigger4(Zombi) DNA MER2_type -1 2730 2295 634 115 0 0 chr6 95792970 95793057 -93486497 - Tigger4(Zombi) DNA MER2_type -2644 87 1 * 239 281 83 10 chr6 95794192 95794250 -93485304 - LTR16A LTR ERVL 0 450 381 1956 125 3 23 chr6 95794250 95794554 -93485000 + AluSx SINE Alu 1 298 -14 239 281 83 10 chr6 95794554 95794591 -93484963 - LTR16A LTR ERVL -69 381 348 3325 279 83 21 chr6 95794751 95796699 -93482855 - HERV16 LTR ERVL -2703 2293 125 1245 277 6 38 chr6 95796806 95797149 -93482405 - LTR16A LTR ERVL -6 444 113 305 262 78 29 chr6 95797205 95797308 -93482246 + L3 LINE CR1 549 656 -921 2126 281 89 46 chr6 95797404 95798660 -93480894 + L2 LINE L2 2005 3307 -6 911 248 116 51 chr6 95801601 95802133 -93477421 + L2 LINE L2 2756 3304 -9 471 260 24 77 chr6 95803068 95803237 -93476317 + MIR SINE MIR 49 208 -54 189 352 19 37 chr6 95803284 95803392 -93476162 + L3 LINE CR1 1307 1412 -165 203 262 175 63 chr6 95803470 95803596 -93475958 + L3 LINE CR1 1431 1570 -7 5137 127 4 11 chr6 95804832 95805664 -93473890 - L1PA13 LINE L1 0 7601 6776 2211 128 0 0 chr6 95805664 95806072 -93473482 + AluSx SINE Alu 1 408 0 4515 54 2 0 chr6 95806099 95806657 -93472897 - L1PA5 LINE L1 -1 6153 5595 276 130 0 0 chr6 95806673 95806719 -93472835 + (A)n Simple_repeat Simple_repeat 1 46 0 8206 164 51 128 chr6 95806719 95807207 -93472347 - L1PA13 LINE L1 -795 6789 6265 10668 128 40 2 chr6 95807207 95809723 -93469831 + L1PA10 LINE L1 3654 6168 0 8206 164 51 128 chr6 95809723 95811666 -93467888 - L1PA13 LINE L1 -1319 6265 4544 883 111 0 0 chr6 95811677 95811794 -93467760 + AluSp/q SINE Alu 181 297 -16 4828 198 57 27 chr6 95811802 95812889 -93466665 - L1PA13 LINE L1 -4927 2654 1535 23 0 0 0 chr6 95813210 95813233 -93466321 + AT_rich Low_complexity Low_complexity 1 23 0 1027 175 26 53 chr6 95813794 95814022 -93465532 + L1MB2 LINE L1 5910 6131 -40 35678 103 13 9 chr6 95814031 95820149 -93459405 + L1PA7 LINE L1 11 6151 -3 217 204 114 0 chr6 95820299 95820343 -93459211 + MIR SINE MIR 199 247 -15 705 250 94 9 chr6 95820997 95821209 -93458345 - MIR SINE MIR -30 232 3 845 271 115 43 chr6 95821574 95821965 -93457589 + L2 LINE L2 2891 3309 -4 858 169 7 0 chr6 95822239 95822393 -93457161 + L1P5 LINE L1 5655 5809 -347 4346 216 48 11 chr6 95822393 95823539 -93456015 - L1MCa LINE L1 -1941 4485 3298 2187 117 5 36 chr6 95823534 95823705 -93455849 - L1PA15-16 LINE L1 -4547 2302 2127 * 6902 66 18 0 chr6 95823705 95824058 -93455496 - L1PA8 LINE L1 0 6172 5827 2741 17 0 0 chr6 95824058 95824360 -93455194 - AluY SINE Alu -9 302 1 6902 66 18 0 chr6 95824360 95825180 -93454374 - L1PA8 LINE L1 -345 5827 5002 2187 117 5 36 chr6 95825180 95825400 -93454154 - L1PA15-16 LINE L1 -4722 2127 1923 238 61 0 0 chr6 95825397 95825430 -93454124 - L1P3 LINE L1 -249 5923 5891 * 2131 141 0 0 chr6 95825430 95825783 -93453771 - AluSx SINE Alu 0 353 1 284 265 59 0 chr6 95826402 95826470 -93453084 - L2 LINE L2 0 3272 3201 4972 198 130 97 chr6 95826788 95828548 -93451006 - L1MCa LINE L1 -4139 2287 437 1521 185 0 54 chr6 95828548 95828862 -93450692 + AluJo SINE Alu 1 297 -15 4972 198 130 97 chr6 95828862 95829287 -93450267 - L1MCa LINE L1 -5989 437 28 2070 117 7 0 chr6 95829377 95829687 -93449867 - AluSx SINE Alu 0 312 1 2811 173 78 36 chr6 95830441 95831236 -93448318 - Tigger6b DNA MER2_type -39 1558 798 2269 78 10 7 chr6 95831236 95831542 -93448012 + AluY SINE Alu 1 307 -4 2521 33 10 3 chr6 95831542 95831842 -93447712 + AluY SINE Alu 1 302 -9 2811 173 78 36 chr6 95831842 95831930 -93447624 - Tigger6b DNA MER2_type -799 798 715 234 0 0 0 chr6 95831930 95831956 -93447598 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2060 121 0 0 chr6 95831958 95832255 -93447299 - AluSx SINE Alu -15 297 1 2811 173 78 36 chr6 95832255 95832552 -93447002 - Tigger6b DNA MER2_type -882 715 147 2313 105 0 7 chr6 95834109 95834414 -93445140 - AluSx SINE Alu -9 303 1 220 242 16 0 chr6 95834483 95834545 -93445009 + (TA)n Simple_repeat Simple_repeat 1 63 0 1449 92 11 96 chr6 95835162 95835433 -93444121 + L1MA2 LINE L1 6048 6295 -9 23 33 0 0 chr6 95835433 95835463 -93444091 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr6 95837660 95837698 -93441856 + AT_rich Low_complexity Low_complexity 1 38 0 281 218 128 0 chr6 95838330 95838408 -93441146 - MIR SINE MIR 0 262 175 1761 161 29 0 chr6 95838415 95838543 -93441011 + AluJb SINE Alu 1 124 -188 315 0 0 0 chr6 95838543 95838578 -93440976 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1761 161 29 0 chr6 95838578 95838729 -93440825 + AluJb SINE Alu 124 288 -24 522 250 56 45 chr6 95838746 95838964 -93440590 + L1ME1 LINE L1 5955 6334 0 182 217 72 72 chr6 95839800 95839869 -93439685 + L3 LINE CR1 332 400 -1177 27 29 0 0 chr6 95840139 95840173 -93439381 + AT_rich Low_complexity Low_complexity 1 34 0 451 250 129 42 chr6 95841107 95841347 -93438207 - MARNA DNA Mariner -13 573 313 10847 136 21 15 chr6 95841591 95841706 -93437848 - Tigger1 DNA MER2_type 0 2418 2305 1626 196 0 14 chr6 95841706 95841992 -93437562 + AluJb SINE Alu 1 282 -30 216 0 0 0 chr6 95841995 95842019 -93437535 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 10847 136 21 15 chr6 95842019 95843463 -93436091 - Tigger1 DNA MER2_type -114 2304 831 882 0 0 0 chr6 95843463 95843561 -93435993 + (TTATG)n Simple_repeat Simple_repeat 4 101 0 10847 136 21 15 chr6 95843561 95844395 -93435159 - Tigger1 DNA MER2_type -1587 831 4 205 264 38 0 chr6 95844610 95844663 -93434891 + L3b LINE CR1 1528 1582 -1 2512 74 0 0 chr6 95845263 95845575 -93433979 - AluSx SINE Alu 0 312 1 277 349 48 6 chr6 95845591 95845757 -93433797 + L2 LINE L2 196 368 -2946 5507 113 14 42 chr6 95845757 95846888 -93432666 + L1PA13 LINE L1 5064 6158 -5 465 293 86 6 chr6 95848484 95848658 -93430896 + MIR SINE MIR 47 234 -28 194 313 24 24 chr6 95849250 95849333 -93430221 - MIR SINE MIR -145 117 35 188 35 35 0 chr6 95850086 95850115 -93429439 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 6121 64 0 3 chr6 95850115 95850896 -93428658 - L1PA7 LINE L1 -13 6141 5363 254 250 159 0 chr6 95850896 95850984 -93428570 - L1M4c LINE L1 -4732 1652 1551 21 0 0 0 chr6 95850991 95851012 -93428542 + AT_rich Low_complexity Low_complexity 1 21 0 630 273 107 9 chr6 95851031 95851247 -93428307 - MIR SINE MIR -16 246 10 312 293 40 0 chr6 95851247 95851346 -93428208 + L1MC/D LINE L1 4675 4777 -1369 417 178 20 59 chr6 95851420 95851521 -93428033 + MIR SINE MIR 111 207 -55 451 301 105 58 chr6 95851548 95852194 -93427360 + L1MC/D LINE L1 4802 5477 -751 636 216 0 22 chr6 95852821 95852960 -93426594 + MLT1A1 LTR MaLR 37 172 -193 285 325 51 61 chr6 95853225 95853422 -93426132 + L2 LINE L2 3115 3309 -4 191 259 0 37 chr6 95853744 95853798 -93425756 - L2 LINE L2 -4 3268 3217 971 317 114 73 chr6 95854315 95854725 -93424829 + L2 LINE L2 1891 2283 -989 1764 133 0 26 chr6 95854725 95855051 -93424503 + AluJb SINE Alu 20 338 0 971 317 114 73 chr6 95855051 95855803 -93423751 + L2 LINE L2 2283 3119 -153 1993 138 3 0 chr6 95855803 95856094 -93423460 - AluSx SINE Alu -20 292 1 971 317 114 73 chr6 95856094 95856255 -93423299 + L2 LINE L2 3119 3272 0 972 242 42 0 chr6 95856270 95856485 -93423069 + MER58A DNA MER1_type 1 224 0 261 246 263 47 chr6 95856511 95856808 -93422746 - L2 LINE L2 -568 2746 2386 393 221 154 0 chr6 95856826 95856930 -93422624 + MIR SINE MIR 17 136 -126 366 385 117 18 chr6 95857100 95857663 -93421891 - L2 LINE L2 -1964 1350 732 181 214 54 18 chr6 95857671 95857727 -93421827 + MIR SINE MIR 134 191 -71 32 0 0 43 chr6 95857762 95857782 -93421772 + AT_rich Low_complexity Low_complexity 1 20 -25 1938 125 56 0 chr6 95857782 95858070 -93421484 + AluSg SINE Alu 1 304 -6 32 0 0 43 chr6 95858070 95858096 -93421458 + AT_rich Low_complexity Low_complexity 20 45 0 1758 141 46 87 chr6 95858429 95858820 -93420734 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr6 95860186 95860215 -93419339 + AT_rich Low_complexity Low_complexity 1 29 0 1162 271 83 27 chr6 95860292 95861014 -93418540 + L1ME4a LINE L1 5336 6099 -22 2214 102 0 7 chr6 95861599 95861893 -93417661 + AluSp SINE Alu 1 292 -21 248 300 70 73 chr6 95862052 95862379 -93417175 + L2 LINE L2 1632 1957 -1357 24 0 0 0 chr6 95862803 95862827 -93416727 + AT_rich Low_complexity Low_complexity 1 24 0 236 247 79 56 chr6 95862861 95862950 -93416604 + L2 LINE L2 2796 2886 -428 1024 239 111 42 chr6 95862994 95863400 -93416154 - HAL1 LINE L1 -1706 801 368 388 133 66 0 chr6 95863400 95863566 -93415988 + (TA)n Simple_repeat Simple_repeat 2 178 0 341 82 0 129 chr6 95863604 95863798 -93415756 + (TATAA)n Simple_repeat Simple_repeat 4 172 0 36 62 0 0 chr6 95863799 95863863 -93415691 + AT_rich Low_complexity Low_complexity 1 64 0 343 133 67 0 chr6 95863863 95864028 -93415526 + (TA)n Simple_repeat Simple_repeat 2 177 0 1542 162 3 51 chr6 95864032 95864328 -93415226 - AluJo SINE Alu -26 286 5 1126 253 42 22 chr6 95864332 95864692 -93414862 - HAL1 LINE L1 -2140 367 1 2055 133 0 9 chr6 95865141 95865456 -93414098 + AluSx SINE Alu 1 312 0 336 190 0 0 chr6 95865989 95866047 -93413507 - L3 LINE CR1 -2 1575 1518 215 302 101 54 chr6 95867297 95867426 -93412128 - MIR3 SINE MIR -66 142 8 189 0 0 0 chr6 95868486 95868507 -93411047 + (TA)n Simple_repeat Simple_repeat 2 22 0 1232 177 74 60 chr6 95869847 95869897 -93409657 - AluJb SINE Alu 0 547 499 1004 60 22 39 chr6 95869897 95870079 -93409475 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1232 177 74 60 chr6 95870079 95870390 -93409164 - AluJb SINE Alu -48 499 1 311 253 60 0 chr6 95870611 95870694 -93408860 + MIR SINE MIR 104 191 -71 638 269 48 64 chr6 95870895 95871252 -93408302 + L1ME4a LINE L1 5555 5905 -216 24 53 0 0 chr6 95871389 95871427 -93408127 + AT_rich Low_complexity Low_complexity 1 38 0 2460 60 0 7 chr6 95871535 95871836 -93407718 + AluY SINE Alu 1 299 -12 241 304 167 29 chr6 95871917 95872019 -93407535 - L2 LINE L2 -16 3297 3182 501 324 129 16 chr6 95872560 95872995 -93406559 - L2 LINE L2 -620 2694 2211 47 67 0 0 chr6 95873560 95873649 -93405905 + AT_rich Low_complexity Low_complexity 1 89 0 23 0 0 0 chr6 95873989 95874012 -93405542 + AT_rich Low_complexity Low_complexity 1 23 0 188 65 0 32 chr6 95874361 95874392 -93405162 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 2424 68 7 7 chr6 95876349 95876657 -93402897 - AluY SINE Alu -3 308 1 614 199 60 20 chr6 95876745 95876896 -93402658 - MIR SINE MIR 0 262 106 1320 88 47 5 chr6 95876947 95877140 -93402414 + AluSp SINE Alu 109 309 -4 234 0 0 0 chr6 95877145 95877171 -93402383 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1445 211 13 10 chr6 95877181 95877489 -93402065 + AluJo SINE Alu 1 309 -3 356 256 50 25 chr6 95877633 95877754 -93401800 + MIR SINE MIR 89 212 -50 25 0 0 0 chr6 95878046 95878071 -93401483 + AT_rich Low_complexity Low_complexity 1 25 0 339 143 286 0 chr6 95878139 95878216 -93401338 + L2 LINE L2 3215 3313 0 918 165 12 107 chr6 95878757 95878999 -93400555 + MER20 DNA MER1_type 1 219 0 191 328 0 0 chr6 95880893 95880954 -93398600 + L2 LINE L2 3249 3309 -4 261 0 0 0 chr6 95881469 95881498 -93398056 + (TA)n Simple_repeat Simple_repeat 2 30 0 2391 77 0 13 chr6 95882076 95882387 -93397167 - AluSx SINE Alu -5 307 1 180 0 0 0 chr6 95882566 95882586 -93396968 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 2129 122 0 3 chr6 95882603 95882906 -93396648 - AluSx SINE Alu -10 302 1 1861 165 0 3 chr6 95883852 95884155 -93395399 + AluSx SINE Alu 1 302 -10 254 236 88 45 chr6 95884270 95884442 -93395112 - LTR33A LTR ERVL -2 521 372 1051 193 20 15 chr6 95884451 95884653 -93394901 - LTR40a LTR ERVL 0 519 317 2165 103 0 3 chr6 95886138 95886428 -93393126 - AluSc SINE Alu -20 289 1 235 291 0 0 chr6 95886487 95886542 -93393012 + L2 LINE L2 3210 3264 -8 1255 171 89 53 chr6 95887419 95887691 -93391863 + AluSx SINE Alu 1 285 -27 225 0 0 0 chr6 95887691 95887716 -93391838 + (CATA)n Simple_repeat Simple_repeat 4 28 0 651 300 58 29 chr6 95887724 95887967 -93391587 - MIR SINE MIR -5 257 8 335 264 0 58 chr6 95888257 95888344 -93391210 - L2 LINE L2 -1 3312 3231 351 336 112 0 chr6 95890454 95890588 -93388966 + MIR3 SINE MIR 16 164 -44 1942 167 8 35 chr6 95891479 95891845 -93387709 - MLT1B LTR MaLR -34 356 1 923 211 59 0 chr6 95891865 95892069 -93387485 - MER20 DNA MER1_type -2 217 2 610 179 39 19 chr6 95893147 95893303 -93386251 + L1MB8 LINE L1 6020 6178 0 1916 95 19 76 chr6 95893640 95893841 -93385713 + AluSx SINE Alu 1 212 -100 225 75 0 25 chr6 95893841 95893881 -93385673 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2281 86 4 0 chr6 95893881 95894159 -93385395 - AluSp SINE Alu -29 284 6 1916 95 19 76 chr6 95894159 95894271 -93385283 + AluSx SINE Alu 210 297 -15 23 0 0 0 chr6 95895173 95895196 -93384358 + AT_rich Low_complexity Low_complexity 1 23 0 2032 125 28 3 chr6 95897030 95897318 -93382236 + AluSx SINE Alu 1 295 -17 1299 144 117 0 chr6 95897597 95897875 -93381679 - MER33 DNA MER1_type -29 295 1 1861 259 68 52 chr6 95898194 95898416 -93381138 + L1ME LINE L1 753 970 -5291 8594 166 7 21 chr6 95898416 95900747 -93378807 - L1PA14 LINE L1 -2 6159 3879 1861 259 68 52 chr6 95900747 95901165 -93378389 + L1ME LINE L1 970 1380 -4881 2300 78 3 32 chr6 95901165 95901473 -93378081 - AluY SINE Alu -12 299 1 1861 259 68 52 chr6 95901473 95901680 -93377874 + L1ME LINE L1 1380 1582 -4679 2113 106 3 44 chr6 95901680 95902000 -93377554 + AluY SINE Alu 5 311 0 1861 259 68 52 chr6 95902000 95902242 -93377312 + L1ME LINE L1 1582 1902 -4359 630 229 80 77 chr6 95902299 95902390 -93377164 + L1ME LINE L1 1881 1970 -4291 2199 121 16 0 chr6 95902390 95902695 -93376859 + AluSq SINE Alu 1 310 -3 630 229 80 77 chr6 95902695 95902930 -93376624 + L1ME LINE L1 1970 2208 -4053 812 211 0 0 chr6 95902933 95903066 -93376488 - AluJb SINE Alu -178 134 2 1128 228 90 0 chr6 95903069 95903402 -93376152 + L1ME LINE L1 2150 2512 -3568 1500 134 181 0 chr6 95903430 95903527 -93376027 + AluSg SINE Alu 1 79 -231 234 0 0 0 chr6 95903527 95903553 -93376001 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1500 134 181 0 chr6 95903553 95903709 -93375845 + AluSg SINE Alu 79 300 -10 3003 80 5 8 chr6 95903838 95904213 -93375341 + THE1C LTR MaLR 1 374 -1 351 350 5 0 chr6 95904228 95904422 -93375132 + L1M4 LINE L1 4878 5072 -1074 290 305 18 56 chr6 95904692 95904894 -93374660 + ERVL LTR ERVL 453 622 -5032 403 203 0 0 chr6 95904903 95904972 -93374582 - MER81 DNA DNA -36 78 10 441 328 61 17 chr6 95905204 95905549 -93374005 + ERVL LTR ERVL 954 1313 -4451 252 322 25 25 chr6 95906225 95906343 -93373211 + ERVL LTR ERVL 1887 2004 -3650 1031 285 88 55 chr6 95906372 95906629 -93372925 + ERVL LTR ERVL 2132 2379 -3106 1997 122 3 27 chr6 95906629 95906925 -93372629 + AluSx SINE Alu 1 289 -23 1031 285 88 55 chr6 95906925 95907459 -93372095 + ERVL LTR ERVL 2379 3007 -2478 2424 141 28 0 chr6 95907459 95907813 -93371741 + THE1B LTR MaLR 1 364 0 1031 285 88 55 chr6 95907813 95908015 -93371539 + ERVL LTR ERVL 3007 3201 -2284 1970 83 0 0 chr6 95910321 95910561 -93368993 + AluSc SINE Alu 1 240 -69 431 249 50 50 chr6 95911863 95912044 -93367510 - L2 LINE L2 -16 3297 3117 2193 93 3 3 chr6 95915021 95915322 -93364232 - AluSg SINE Alu -9 301 1 1935 83 116 7 chr6 95915324 95915600 -93363954 - AluSx SINE Alu -6 306 1 3222 147 52 2 chr6 95917023 95917586 -93361968 - L1MA9 LINE L1 0 6312 5722 427 254 71 46 chr6 95918148 95918345 -93361209 + MIR SINE MIR 3 204 -58 190 224 184 0 chr6 95918923 95918972 -93360582 + MIR SINE MIR 194 251 -11 2175 105 27 0 chr6 95919479 95919775 -93359779 - AluSc SINE Alu -5 304 1 21 89 0 0 chr6 95920321 95920377 -93359177 + AT_rich Low_complexity Low_complexity 1 56 0 1718 150 4 8 chr6 95920953 95921220 -93358334 - AluSx SINE Alu -34 278 13 495 97 0 0 chr6 95921448 95921520 -93358034 - L1PA4 LINE L1 0 6155 6084 260 232 256 37 chr6 95921691 95922066 -93357488 + L1M4 LINE L1 4318 4774 -1372 248 222 56 33 chr6 95922123 95922213 -93357341 + LTR52 LTR ERVL 293 384 -37 1824 161 14 3 chr6 95922529 95922821 -93356733 - AluJo SINE Alu -10 302 8 851 184 60 12 chr6 95922822 95922990 -93356564 - MLT1E3 LTR MaLR -448 176 1 217 333 27 27 chr6 95923698 95923773 -93355781 + L2 LINE L2 2969 3043 -229 2182 171 17 0 chr6 95924693 95925045 -93354509 + L1PA16 LINE L1 5806 6163 -3 3218 214 60 39 chr6 95925169 95925365 -93354189 + L1MEc LINE L1 2149 2339 -3876 2006 130 41 3 chr6 95925365 95925658 -93353896 + AluSx SINE Alu 1 304 -8 3218 214 60 39 chr6 95925658 95926503 -93353051 + L1MEc LINE L1 2339 3168 -3047 1942 229 78 71 chr6 95926506 95926568 -93352986 + L1M4 LINE L1 4431 4491 -1655 1547 143 103 11 chr6 95926568 95926841 -93352713 + AluJb SINE Alu 1 298 -14 1942 229 78 71 chr6 95926841 95927552 -93352002 + L1M4 LINE L1 4491 5213 -933 1498 142 36 0 chr6 95927552 95927771 -93351783 + MER30 DNA MER1_type 4 230 0 1942 229 78 71 chr6 95927771 95927829 -93351725 + L1M4 LINE L1 5213 5269 -877 21 36 0 0 chr6 95927936 95927964 -93351590 + AT_rich Low_complexity Low_complexity 1 28 0 878 138 125 107 chr6 95928001 95928225 -93351329 + AluSg/x SINE Alu 85 312 0 453 257 9 18 chr6 95928310 95928419 -93351135 + MER81 DNA DNA 2 109 -5 1066 224 66 75 chr6 95928434 95928875 -93350679 - L1MC5 LINE L1 -219 7742 7306 3276 95 2 14 chr6 95929072 95929516 -93350038 + L1PA10 LINE L1 5730 6168 0 2250 121 0 3 chr6 95929803 95930116 -93349438 + AluSx SINE Alu 1 312 0 465 213 110 29 chr6 95930344 95930480 -93349074 + L1MC5 LINE L1 7761 7907 -54 21 0 0 0 chr6 95930489 95930510 -93349044 + AT_rich Low_complexity Low_complexity 1 21 0 1137 201 0 39 chr6 95931186 95931415 -93348139 + AluJo SINE Alu 84 303 -9 963 141 12 25 chr6 95931548 95931711 -93347843 + FRAM SINE Alu 1 153 -23 2032 173 81 2 chr6 95931716 95932109 -93347445 - L1MC2 LINE L1 -11 6333 5910 1491 189 99 59 chr6 95932112 95932487 -93347067 - MLT1B LTR MaLR 0 390 1 1341 144 115 133 chr6 95932489 95932696 -93346858 - MLT1B-int LTR MaLR -2 1733 1524 2017 144 3 0 chr6 95932696 95932988 -93346566 + AluSx SINE Alu 1 293 -19 1341 144 115 133 chr6 95932988 95933065 -93346489 - MLT1B-int LTR MaLR -211 1524 1447 2124 122 0 14 chr6 95933065 95933359 -93346195 + AluSx SINE Alu 1 290 -22 1341 144 115 133 chr6 95933359 95933463 -93346091 - MLT1B-int LTR MaLR -288 1447 1351 2208 109 0 10 chr6 95933463 95933765 -93345789 + AluSp SINE Alu 1 299 -14 239 286 125 36 chr6 95933779 95933891 -93345663 - MLT1B-int LTR MaLR -360 1375 1254 387 216 11 11 chr6 95934000 95934088 -93345466 - MLT1B-int LTR MaLR -968 767 680 2362 189 35 11 chr6 95934212 95934807 -93344747 - MLT1B-int LTR MaLR -639 732 1 1152 196 44 96 chr6 95934841 95935125 -93344429 - MLT1B LTR MaLR 0 390 159 1830 150 7 26 chr6 95935125 95935432 -93344122 - AluJo SINE Alu -11 301 1 1152 196 44 96 chr6 95935432 95935584 -93343970 - MLT1B LTR MaLR -231 159 1 3358 239 52 18 chr6 95935584 95935672 -93343882 - L1MC2 LINE L1 -433 5911 5827 2117 139 0 3 chr6 95935672 95935973 -93343581 - AluSx SINE Alu -12 300 1 3358 239 52 18 chr6 95935973 95936623 -93342931 - L1MC2 LINE L1 -517 5827 5200 1461 171 106 18 chr6 95936623 95936897 -93342657 - AluJo SINE Alu -14 298 1 3358 239 52 18 chr6 95936897 95937307 -93342247 - L1MC2 LINE L1 -1144 5200 4805 2024 137 0 7 chr6 95937307 95937592 -93341962 - AluSx SINE Alu -16 296 14 3358 239 52 18 chr6 95937592 95937936 -93341618 - L1MC2 LINE L1 -1539 4805 4369 629 182 8 50 chr6 95937965 95938086 -93341468 + FLAM_A SINE Alu 13 128 -14 1864 212 33 86 chr6 95938086 95938691 -93340863 - L1MC2 LINE L1 -1787 4359 3787 2228 97 0 13 chr6 95938719 95939017 -93340537 - AluSg1 SINE Alu -15 294 1 42592 61 5 1 chr6 95939255 95945384 -93334170 + L1PA5 LINE L1 11 6154 0 1542 228 10 0 chr6 95945404 95945694 -93333860 + AluJb SINE Alu 1 293 -19 2064 125 38 49 chr6 95946375 95946743 -93332811 + THE1B LTR MaLR 1 364 0 2252 157 17 15 chr6 95946896 95947305 -93332249 - MLT2D LTR ERVL -4 410 1 285 279 23 44 chr6 95947760 95947870 -93331684 + MIR SINE MIR 19 126 -82 870 154 0 118 chr6 95947916 95948137 -93331417 + MER20 DNA MER1_type 2 196 -23 532 255 60 50 chr6 95949279 95949479 -93330075 - MIR SINE MIR -12 250 49 1721 167 28 7 chr6 95949582 95949870 -93329684 - AluJo SINE Alu -18 294 1 229 270 0 0 chr6 95950173 95950236 -93329318 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 414 259 7 14 chr6 95950352 95950495 -93329059 - L1MC/D LINE L1 -1985 5823 5682 322 333 71 22 chr6 95950514 95950697 -93328857 + L2 LINE L2 2462 2653 -661 335 199 23 99 chr6 95950944 95951075 -93328479 - Charlie8 DNA MER1_type -2201 216 96 2283 105 0 16 chr6 95951315 95951620 -93327934 + AluSx SINE Alu 1 300 -12 550 333 38 9 chr6 95951761 95951971 -93327583 - MIR SINE MIR -15 247 32 261 329 143 55 chr6 95952549 95952786 -93326768 - L2 LINE L2 -1 3271 3014 1413 169 41 48 chr6 95953914 95954204 -93325350 + AluJo SINE Alu 1 288 -24 22 0 0 0 chr6 95954211 95954233 -93325321 + AT_rich Low_complexity Low_complexity 1 22 0 355 283 189 19 chr6 95954514 95954673 -93324881 - MIR3 SINE MIR -6 202 17 245 286 0 14 chr6 95954704 95954774 -93324780 - L2 LINE L2 -17 3255 3187 877 166 40 89 chr6 95954909 95955156 -93324398 - MER8 DNA MER2_type -1 238 4 246 32 0 0 chr6 95955310 95955341 -93324213 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 334 348 0 0 chr6 95955968 95956086 -93323468 + C-rich Low_complexity Low_complexity 1 118 0 262 233 60 68 chr6 95956744 95956877 -93322677 + L1MC5 LINE L1 7762 7893 -68 260 206 192 0 chr6 95958760 95958833 -93320721 - MIR3 SINE MIR -14 194 108 1547 147 80 31 chr6 95959080 95959366 -93320188 - AluJb SINE Alu -12 300 1 2084 109 10 0 chr6 95959402 95959696 -93319858 - AluSx SINE Alu -12 300 4 1280 217 70 107 chr6 95959770 95959877 -93319677 - MLT1D LTR MaLR 0 505 396 2469 62 0 7 chr6 95959877 95960184 -93319370 + AluY SINE Alu 1 305 -6 1280 217 70 107 chr6 95960184 95960560 -93318994 - MLT1D LTR MaLR -109 396 40 376 313 178 24 chr6 95960663 95960871 -93318683 - MIR SINE MIR -10 252 13 818 269 15 35 chr6 95962352 95962612 -93316942 - MIR SINE MIR 0 262 8 354 165 0 25 chr6 95963596 95963675 -93315879 + AluSc SINE Alu 223 299 0 749 194 36 77 chr6 95963885 95964081 -93315473 - MER5A DNA MER1_type -1 188 1 335 115 33 0 chr6 95965051 95965112 -93314442 + C-rich Low_complexity Low_complexity 5 67 0 1686 154 48 18 chr6 95965114 95965386 -93314168 - AluJo SINE Alu -32 280 1 217 200 0 0 chr6 95969386 95969426 -93310128 + L2 LINE L2 3272 3311 -2 2218 100 10 7 chr6 95969758 95970057 -93309497 - AluSg SINE Alu -10 300 1 715 163 14 78 chr6 95970152 95970293 -93309261 - FLAM_C SINE Alu -11 132 1 926 182 12 24 chr6 95970738 95970908 -93308646 - FRAM SINE Alu -10 166 1 261 0 0 0 chr6 95970914 95970943 -93308611 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr6 95971249 95971277 -93308277 + AT_rich Low_complexity Low_complexity 1 28 0 1679 224 22 3 chr6 95971390 95971748 -93307806 - MLT1A1 LTR MaLR 0 365 1 259 336 47 19 chr6 95971827 95971934 -93307620 - L3 LINE CR1 -1 1576 1467 27 29 0 0 chr6 95972540 95972574 -93306980 + AT_rich Low_complexity Low_complexity 1 34 0 1668 167 7 14 chr6 95972574 95972849 -93306705 - AluJb SINE Alu -39 273 1 1125 192 28 115 chr6 95973072 95973463 -93306091 - MLT1A2 LTR MaLR -17 357 1 4679 60 1 0 chr6 95976059 95976710 -93302844 - L1PA5 LINE L1 -2580 3566 2915 14679 44 1 4 chr6 95976711 95979298 -93300256 + L1PA5 LINE L1 3559 6152 -2 231 326 93 39 chr6 95980168 95980297 -93299257 - L2 LINE L2 -838 2476 2341 281 133 53 13 chr6 95980475 95980550 -93299004 + CT-rich Low_complexity Low_complexity 2 79 0 397 288 166 30 chr6 95980552 95980913 -93298641 - HAL1 LINE L1 -1218 1289 880 259 264 0 18 chr6 95980917 95981027 -93298527 + CT-rich Low_complexity Low_complexity 4 111 0 630 138 44 19 chr6 95981051 95981210 -93298344 + CT-rich Low_complexity Low_complexity 1 163 0 1612 198 13 16 chr6 95981210 95981513 -93298041 - AluJb SINE Alu -10 302 1 1027 147 30 200 chr6 95982419 95982802 -93296752 + Charlie1b DNA MER1_type 14 268 -2493 1865 137 10 34 chr6 95982802 95983095 -93296459 - AluSx SINE Alu -26 286 1 1027 147 30 200 chr6 95983095 95983310 -93296244 + Charlie1b DNA MER1_type 268 518 -5 754 31 21 0 chr6 95983554 95983650 -93295904 + L1PA4 LINE L1 6058 6155 0 299 91 0 0 chr6 95984358 95984402 -93295152 - Alu SINE Alu -10 290 247 2480 149 8 25 chr6 95984522 95984999 -93294555 + L1MA7 LINE L1 5591 6059 -232 18636 50 10 0 chr6 95985013 95988176 -93291378 - L1PA5 LINE L1 -9 6145 2960 11992 52 1 10 chr6 95988176 95989800 -93289754 + L1PA5 LINE L1 1336 2945 -3201 375 190 0 0 chr6 95989795 95989874 -93289680 + L1MA7 LINE L1 6046 6124 -167 * 32204 101 13 33 chr6 95989937 95996213 -93283341 + L1PA5 LINE L1 12 6153 -1 23 0 0 0 chr6 95996334 95996357 -93283197 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr6 95997160 95997192 -93282362 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr6 95997280 95997304 -93282250 + AT_rich Low_complexity Low_complexity 1 24 0 253 95 32 32 chr6 95998477 95998540 -93281014 + (TCTCTG)n Simple_repeat Simple_repeat 2 64 0 252 274 34 77 chr6 95998935 95999052 -93280502 + MIR SINE MIR 65 176 -86 297 188 174 0 chr6 95999092 95999161 -93280393 - L2 LINE L2 -1 3312 3232 570 67 0 0 chr6 95999906 95999981 -93279573 + (GA)n Simple_repeat Simple_repeat 2 76 0 1810 164 0 25 chr6 96000968 96001285 -93278269 + AluJo SINE Alu 1 309 -3 24 0 0 0 chr6 96001723 96001747 -93277807 + AT_rich Low_complexity Low_complexity 1 24 0 711 280 80 97 chr6 96002650 96003240 -93276314 + MER21B LTR ERV1 60 639 -224 203 246 18 0 chr6 96004534 96004591 -93274963 + (CA)n Simple_repeat Simple_repeat 2 59 0 1614 209 3 10 chr6 96004628 96004929 -93274625 - AluJo SINE Alu -13 299 1 1428 174 7 69 chr6 96005312 96005617 -93273937 + AluJo SINE Alu 5 290 -22 6599 198 43 52 chr6 96005633 96006020 -93273534 + L1MB7 LINE L1 3497 3886 -2260 4438 168 77 13 chr6 96006020 96006867 -93272687 - MER54A LTR ERVL 0 901 1 6599 198 43 52 chr6 96006867 96007901 -93271653 + L1MB7 LINE L1 3886 4900 -1246 1440 184 0 103 chr6 96007901 96008249 -93271305 - AluJb SINE Alu 0 312 1 6599 198 43 52 chr6 96008249 96008681 -93270873 + L1MB7 LINE L1 4900 5334 -812 1714 190 80 56 chr6 96008683 96009235 -93270319 + MER34B LTR ERV1 1 565 0 2598 170 61 19 chr6 96009238 96009971 -93269583 + L1MB7 LINE L1 5336 6183 -1 823 270 32 61 chr6 96010238 96010582 -93268972 + MER93b LTR ERV1 12 345 -28 1175 212 43 0 chr6 96010582 96010813 -93268741 - AluJo SINE Alu -71 241 1 254 95 0 0 chr6 96010814 96010856 -93268698 + MER57A LTR ERV1 362 403 0 7190 35 10 0 chr6 96010932 96012055 -93267499 + L1PA5 LINE L1 4985 6117 -37 306 0 0 0 chr6 96012061 96012095 -93267459 + (TAA)n Simple_repeat Simple_repeat 3 36 0 2226 109 54 20 chr6 96013211 96013561 -93265993 + THE1B LTR MaLR 1 362 -2 10254 106 58 17 chr6 96013566 96014695 -93264859 + THE1B-int LTR MaLR 3 1211 -369 2246 106 0 0 chr6 96014695 96014987 -93264567 - AluSc SINE Alu -17 292 1 10254 106 58 17 chr6 96014987 96015373 -93264181 + THE1B-int LTR MaLR 1211 1580 0 2193 105 78 20 chr6 96015373 96015717 -93263837 + THE1B LTR MaLR 1 364 0 1972 130 7 19 chr6 96015829 96016136 -93263418 - AluSx SINE Alu -9 303 1 7395 32 0 0 chr6 96016732 96017625 -93261929 + L1P LINE L1 4337 5229 -917 22 35 0 0 chr6 96017962 96017991 -93261563 + AT_rich Low_complexity Low_complexity 1 29 0 36 0 0 0 chr6 96018249 96018285 -93261269 + AT_rich Low_complexity Low_complexity 1 36 0 245 132 94 0 chr6 96019066 96019119 -93260435 - HsTC2 DNA Tc2 -611 1287 1230 * 355 263 0 0 chr6 96019114 96019190 -93260364 - HsTC2 DNA Tc2 -1772 126 51 1482 234 87 61 chr6 96019865 96020373 -93259181 + MER68 LTR ERV1 1 521 -41 795 269 84 59 chr6 96020428 96020833 -93258721 - L2 LINE L2 0 3313 2899 32 95 0 0 chr6 96020925 96021020 -93258534 + AT_rich Low_complexity Low_complexity 1 95 0 496 185 289 7 chr6 96021153 96021288 -93258266 - LTR16A LTR ERVL 0 450 278 4169 174 42 41 chr6 96021299 96022791 -93256763 - L1MB7 LINE L1 -1 6183 4674 435 302 0 9 chr6 96022797 96022913 -93256641 - LTR16A LTR ERVL -306 144 30 1104 273 127 16 chr6 96023211 96023643 -93255911 + L2 LINE L2 2832 3311 -2 180 0 0 0 chr6 96023953 96023973 -93255581 + (GA)n Simple_repeat Simple_repeat 1 20 0 517 303 69 11 chr6 96024438 96024626 -93254928 + MIR SINE MIR 48 246 -16 322 318 45 50 chr6 96026402 96026603 -93252951 + L2 LINE L2 2560 2759 -555 268 282 128 39 chr6 96026831 96026987 -93252567 + L2 LINE L2 3101 3270 -2 291 300 44 11 chr6 96027872 96027962 -93251592 - MIR3 SINE MIR -6 202 110 187 234 0 0 chr6 96028132 96028179 -93251375 - MIR SINE MIR -6 256 210 293 204 0 91 chr6 96028188 96028276 -93251278 + MER116 DNA Mariner 1 80 0 621 246 170 0 chr6 96028277 96028448 -93251106 - MIR SINE MIR -59 203 4 1548 185 0 68 chr6 96028811 96029135 -93250419 + AluJo SINE Alu 1 302 -10 2373 87 3 7 chr6 96029424 96029734 -93249820 - AluSc SINE Alu 0 309 1 25 31 0 0 chr6 96030771 96030803 -93248751 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr6 96031072 96031096 -93248458 + AT_rich Low_complexity Low_complexity 1 24 0 476 114 11 68 chr6 96031566 96031654 -93247900 - AluSq/x SINE Alu -171 141 59 5800 164 14 21 chr6 96081674 96082179 -93197375 + L1PB1 LINE L1 4633 5140 -1011 587 12 0 59 chr6 96082179 96082264 -93197290 + L1PA4 LINE L1 6076 6155 0 5800 164 14 21 chr6 96082264 96082896 -93196658 + L1PB1 LINE L1 5140 5756 -395 1966 98 0 0 chr6 96082896 96083151 -93196403 + AluSg SINE Alu 55 309 -1 5800 164 14 21 chr6 96083151 96083540 -93196014 + L1PB1 LINE L1 5756 6146 -5 278 332 88 11 chr6 96083569 96083831 -93195723 + L1MEd LINE L1 908 1189 -4930 270 264 139 49 chr6 96084011 96084155 -93195399 + HAL1 LINE L1 290 446 -2061 438 302 29 43 chr6 96084499 96084638 -93194916 + MIR SINE MIR 5 141 -121 2103 135 0 0 chr6 96084640 96084936 -93194618 - AluSx SINE Alu -16 296 1 3718 197 39 21 chr6 96085159 96086053 -93193501 + L1MC4 LINE L1 7119 8028 -14 1411 284 34 44 chr6 96086380 96086858 -93192696 + MLT1J LTR MaLR 1 473 -38 516 255 237 58 chr6 96087312 96087590 -93191964 - MLT1I LTR MaLR -10 399 72 714 243 46 0 chr6 96087638 96087790 -93191764 - MLT1I LTR MaLR -201 208 50 966 201 146 9 chr6 96088180 96088509 -93191045 + Charlie1 DNA MER1_type 2343 2716 -45 307 190 17 0 chr6 96088537 96088595 -93190959 + Charlie1 DNA MER1_type 2702 2760 -1 1266 269 81 52 chr6 96088908 96089465 -93190089 - MLT1L LTR MaLR -36 579 7 694 304 49 20 chr6 96090082 96090388 -93189166 + L2 LINE L2 2995 3309 -4 557 242 7 0 chr6 96091894 96092043 -93187511 - L1MB7 LINE L1 -18 6166 6017 236 53 26 0 chr6 96092685 96092723 -93186831 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 456 284 16 24 chr6 96092817 96092944 -93186610 + L2 LINE L2 3187 3312 -1 234 0 0 0 chr6 96093997 96094023 -93185531 + (A)n Simple_repeat Simple_repeat 1 26 0 665 181 6 18 chr6 96094248 96094414 -93185140 + CT-rich Low_complexity Low_complexity 1 164 0 216 156 0 0 chr6 96094416 96094448 -93185106 + polypyrimidine Low_complexity Low_complexity 1 32 0 1301 193 0 17 chr6 96094465 96094698 -93184856 - AluJb SINE Alu -83 229 1 348 330 55 58 chr6 96094708 96094747 -93184807 + L2 LINE L2 2047 2085 -1229 246 32 0 0 chr6 96094747 96094778 -93184776 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 348 330 55 58 chr6 96094778 96095029 -93184525 + L2 LINE L2 2085 2336 -978 1099 293 99 6 chr6 96095147 96095492 -93184062 + MLT1I LTR MaLR 30 406 -3 484 363 136 14 chr6 96095567 96096000 -93183554 + L2 LINE L2 2360 2845 -469 181 299 0 126 chr6 96096027 96096154 -93183400 + L2 LINE L2 2970 3080 -192 207 0 0 0 chr6 96096202 96096225 -93183329 + (T)n Simple_repeat Simple_repeat 1 23 0 4364 92 3 19 chr6 96096361 96096991 -93182563 - L1PA10 LINE L1 -3 6165 5546 313 253 33 22 chr6 96097066 96097157 -93182397 - MIR SINE MIR -10 252 161 21 0 0 0 chr6 96097256 96097277 -93182277 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr6 96097360 96097406 -93182148 + AT_rich Low_complexity Low_complexity 1 46 0 549 368 70 22 chr6 96100352 96100942 -93178612 - L2 LINE L2 -686 2628 2011 38 61 0 0 chr6 96102472 96102538 -93177016 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr6 96102928 96102956 -93176598 + AT_rich Low_complexity Low_complexity 1 28 0 271 287 11 11 chr6 96103945 96104039 -93175515 - MIR SINE MIR -118 144 51 401 264 40 8 chr6 96105824 96105949 -93173605 - MIR SINE MIR -13 249 121 3469 137 50 5 chr6 96106446 96107021 -93172533 + MER6A DNA MER2_type 5 605 0 364 237 148 0 chr6 96107085 96107220 -93172334 + MIR SINE MIR 104 258 -4 181 206 0 0 chr6 96107311 96107345 -93172209 - L2 LINE L2 -12 3301 3268 264 225 56 14 chr6 96108218 96108289 -93171265 - MER58 DNA MER1_type 0 2420 2347 254 197 303 0 chr6 96108306 96108372 -93171182 - MER58 DNA MER1_type -2333 87 2 1298 206 68 25 chr6 96109015 96109340 -93170214 - MER2 DNA MER2_type -6 339 1 235 250 137 32 chr6 96110464 96110588 -93168966 + L2 LINE L2 3174 3310 -3 2845 142 20 2 chr6 96110675 96111134 -93168420 - MLT1C LTR MaLR 0 467 1 1316 150 44 9 chr6 96111673 96111900 -93167654 - MER46A DNA MER2_type 0 236 2 1808 150 3 33 chr6 96111983 96112290 -93167264 - AluJo SINE Alu -14 298 1 2045 115 141 0 chr6 96113055 96113368 -93166186 + LTR18A LTR ERVL 1 357 0 2977 195 28 39 chr6 96114689 96114918 -93164636 - MER82 DNA MER2_type -1 652 422 1964 131 24 3 chr6 96114918 96115208 -93164346 + AluSp SINE Alu 1 296 -17 2977 195 28 39 chr6 96115208 96115593 -93163961 - MER82 DNA MER2_type -231 422 45 521 254 9 9 chr6 96115592 96115706 -93163848 - MER82 DNA MER2_type -538 115 2 * 23 0 0 0 chr6 96115993 96116016 -93163538 + AT_rich Low_complexity Low_complexity 1 23 0 572 259 15 8 chr6 96116133 96116264 -93163290 - MER82 DNA MER2_type -59 594 463 2257 98 3 10 chr6 96116343 96116650 -93162904 - AluSq SINE Alu -8 305 1 269 281 135 0 chr6 96116901 96116990 -93162564 + Charlie8 DNA MER1_type 11 111 -2306 879 224 57 32 chr6 96116990 96117391 -93162163 - L1M4 LINE L1 -2630 3516 3106 274 174 145 14 chr6 96117709 96117778 -93161776 - MIR SINE MIR -75 187 110 245 309 73 18 chr6 96118320 96118430 -93161124 - MIR SINE MIR -145 117 2 25 0 0 0 chr6 96119825 96119850 -93159704 + AT_rich Low_complexity Low_complexity 1 25 0 1014 261 97 48 chr6 96120387 96120544 -93159010 + MER45C DNA AcHobo 1 149 -804 1490 171 42 103 chr6 96120544 96120953 -93158601 - MLT1B LTR MaLR -2 388 5 1014 261 97 48 chr6 96120953 96121353 -93158201 + MER45C DNA AcHobo 149 628 -325 332 369 89 38 chr6 96121709 96121945 -93157609 + L2 LINE L2 3025 3272 0 316 201 148 47 chr6 96121973 96122122 -93157432 + MIR SINE MIR 3 166 -96 23 0 0 0 chr6 96122338 96122361 -93157193 + AT_rich Low_complexity Low_complexity 1 23 0 1509 84 20 0 chr6 96123058 96123282 -93156272 - L1M LINE L1 -743 5403 5192 3303 72 5 0 chr6 96123282 96123711 -93155843 + L1PA8 LINE L1 5741 6172 0 553 280 47 38 chr6 96123878 96124114 -93155440 + MIR SINE MIR 4 241 -21 537 240 86 47 chr6 96124111 96124344 -93155210 + L2 LINE L2 2966 3207 -106 * 21 71 0 0 chr6 96124930 96124972 -93154582 + GC_rich Low_complexity Low_complexity 1 42 0 222 138 35 35 chr6 96125626 96125684 -93153870 + (CCCCG)n Simple_repeat Simple_repeat 3 60 0 180 296 49 56 chr6 96125912 96126054 -93153500 - MIR SINE MIR -75 187 47 212 269 75 0 chr6 96126461 96126528 -93153026 + L3 LINE CR1 236 307 -1270 490 231 41 14 chr6 96126612 96126759 -93152795 - MER112 DNA MER1_type -12 248 98 21 0 0 0 chr6 96127282 96127303 -93152251 + AT_rich Low_complexity Low_complexity 1 21 0 6161 132 170 127 chr6 96127525 96129151 -93150403 - pTR5 LTR ERV1 -1 2437 741 1809 159 16 38 chr6 96129635 96129950 -93149604 - AluJb SINE Alu -4 308 1 2396 105 68 3 chr6 96131177 96131528 -93148026 + THE1C LTR MaLR 1 374 -1 10044 107 36 51 chr6 96131530 96133132 -93146422 + THE1C-int LTR MaLR 2 1580 0 2751 87 16 5 chr6 96133132 96133499 -93146055 + THE1C LTR MaLR 1 371 -4 237 286 95 38 chr6 96133727 96133832 -93145722 + MER115 DNA AcHobo 9 119 -574 220 320 72 24 chr6 96134553 96134678 -93144876 - L2 LINE L2 -217 3055 2925 229 143 41 0 chr6 96134795 96134844 -93144710 + (TGGG)n Simple_repeat Simple_repeat 3 53 0 378 130 0 0 chr6 96135271 96135325 -93144229 - MLT1B LTR MaLR 0 390 337 1363 165 26 37 chr6 96135335 96135608 -93143946 - AluSp SINE Alu -7 306 37 562 102 0 45 chr6 96135734 96135822 -93143732 - MLT1B LTR MaLR -303 87 4 1960 144 6 53 chr6 96135846 96136206 -93143348 - MER2 DNA MER2_type 0 344 2 2096 127 10 0 chr6 96136488 96136779 -93142775 + AluSx SINE Alu 1 294 -18 2323 104 0 7 chr6 96137507 96137814 -93141740 + AluSc SINE Alu 1 305 -4 330 132 0 0 chr6 96138373 96138426 -93141128 + (TG)n Simple_repeat Simple_repeat 2 54 0 2014 224 41 12 chr6 96141158 96141666 -93137888 + L1ME1 LINE L1 5640 6162 -4 3397 230 52 26 chr6 96141679 96141969 -93137585 + L1M4 LINE L1 2326 2607 -3539 2371 79 0 32 chr6 96141969 96142285 -93137269 + AluY SINE Alu 1 306 -5 3397 230 52 26 chr6 96142285 96143039 -93136515 + L1M4 LINE L1 2607 3397 -2749 1712 129 85 4 chr6 96143809 96144081 -93135473 + AluSx SINE Alu 6 299 -13 786 174 15 0 chr6 96144160 96144292 -93135262 - AluJo SINE Alu -178 134 1 904 199 129 138 chr6 96144765 96145252 -93134302 + MLT1H1 LTR MaLR 65 547 -8 21 36 0 0 chr6 96145723 96145751 -93133803 + AT_rich Low_complexity Low_complexity 1 28 0 2784 80 11 19 chr6 96145802 96146178 -93133376 - THE1C LTR MaLR -2 373 1 293 365 14 21 chr6 96146240 96146385 -93133169 - MIR3 SINE MIR -49 159 16 652 296 12 12 chr6 96146494 96146737 -93132817 + MIR SINE MIR 8 250 -12 31 44 0 0 chr6 96146771 96146816 -93132738 + AT_rich Low_complexity Low_complexity 1 45 0 2087 104 0 34 chr6 96147005 96147325 -93132229 + AluSx SINE Alu 1 310 0 2171 128 0 0 chr6 96147880 96148184 -93131370 - AluSc SINE Alu -5 304 1 477 266 0 0 chr6 96148191 96148334 -93131220 + (TA)n Simple_repeat Simple_repeat 1 143 0 239 263 0 63 chr6 96148336 96148431 -93131123 - L1MC4 LINE L1 -1339 6703 6615 230 294 47 0 chr6 96148408 96148493 -93131061 + L1MC4 LINE L1 6614 6702 -1340 * 504 250 8 21 chr6 96148485 96148726 -93130828 + (CATATA)n Simple_repeat Simple_repeat 1 238 0 270 308 0 0 chr6 96148741 96148848 -93130706 + (TA)n Simple_repeat Simple_repeat 1 107 0 320 294 0 22 chr6 96148860 96148952 -93130602 + L1MC4 LINE L1 6614 6703 -1339 307 254 16 16 chr6 96148952 96149074 -93130480 + (CATATA)n Simple_repeat Simple_repeat 6 127 0 253 262 71 0 chr6 96149074 96149158 -93130396 + L1MC4 LINE L1 6614 6703 -1339 2091 118 3 0 chr6 96150089 96150376 -93129178 + AluSx SINE Alu 21 308 -4 197 303 15 30 chr6 96152520 96152586 -93126968 + L2 LINE L2 3208 3272 0 198 0 0 0 chr6 96152717 96152739 -93126815 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2314 83 0 0 chr6 96153131 96153420 -93126134 + AluSq SINE Alu 1 289 -24 395 291 228 19 chr6 96153578 96153846 -93125708 - L2 LINE L2 -3 3310 2987 382 312 117 59 chr6 96153914 96154428 -93125126 + L2 LINE L2 2715 3271 -1 776 290 61 8 chr6 96154675 96154920 -93124634 + MLT1I LTR MaLR 5 262 -147 422 350 67 11 chr6 96154950 96155130 -93124424 + L2 LINE L2 2569 2758 -556 24 0 0 0 chr6 96155735 96155759 -93123795 + AT_rich Low_complexity Low_complexity 1 24 0 365 353 37 7 chr6 96156047 96156183 -93123371 - L3b LINE CR1 -37 1546 1407 2154 127 0 0 chr6 96156504 96156795 -93122759 + AluSg SINE Alu 5 295 -15 372 112 146 11 chr6 96156887 96156976 -93122578 + L1MA8 LINE L1 6186 6286 -5 21 0 0 0 chr6 96157444 96157465 -93122089 + AT_rich Low_complexity Low_complexity 1 21 0 261 309 55 18 chr6 96157700 96157810 -93121744 - L2 LINE L2 -5 3267 3154 251 344 0 10 chr6 96157821 96157917 -93121637 - MER5A DNA MER1_type -10 179 85 1029 128 26 0 chr6 96158434 96158590 -93120964 + AluSg/x SINE Alu 148 307 -5 2719 56 0 14 chr6 96159697 96160054 -93119500 + L1PA7 LINE L1 5798 6149 -5 327 228 81 27 chr6 96161661 96161810 -93117744 - L1ME4a LINE L1 -2 6119 5963 192 333 77 0 chr6 96162285 96162363 -93117191 - L2 LINE L2 -25 3247 3164 2048 145 123 75 chr6 96162375 96163000 -93116554 - MER39 LTR ERV1 -10 697 6 5887 106 36 0 chr6 96163445 96164413 -93115141 - L1PA13 LINE L1 -5 6158 5177 1635 156 21 0 chr6 96164422 96164711 -93114843 + L1MB5 LINE L1 5683 5977 -197 411 146 204 0 chr6 96164718 96164821 -93114733 - L1MC3 LINE L1 -159 7626 7503 1689 176 6 3 chr6 96164826 96165144 -93114410 - L1PA13 LINE L1 -959 5187 4869 243 0 0 0 chr6 96165724 96165751 -93113803 + (TG)n Simple_repeat Simple_repeat 2 28 0 2408 76 3 0 chr6 96165888 96166192 -93113362 - AluY SINE Alu -6 305 1 16761 152 29 34 chr6 96167407 96167585 -93111969 - L1MA2 LINE L1 0 7723 7546 2263 102 0 0 chr6 96167585 96167899 -93111655 + AluSq SINE Alu 1 314 0 16761 152 29 34 chr6 96167899 96167950 -93111604 - L1MA2 LINE L1 -177 7546 7496 2155 124 0 13 chr6 96167950 96168249 -93111305 + AluSx SINE Alu 1 295 -17 180 0 0 0 chr6 96168249 96168269 -93111285 + (TA)n Simple_repeat Simple_repeat 2 21 0 16761 152 29 34 chr6 96168269 96168317 -93111237 - L1MA2 LINE L1 -226 7497 7450 189 0 0 0 chr6 96168317 96168338 -93111216 + (TC)n Simple_repeat Simple_repeat 2 22 0 16761 152 29 34 chr6 96168338 96168434 -93111120 - L1MA2 LINE L1 -273 7450 7355 1798 153 0 4 chr6 96168434 96168708 -93110846 - AluSx SINE Alu -39 273 1 16761 152 29 34 chr6 96168708 96175310 -93104244 - L1MA2 LINE L1 -368 7355 238 232 215 0 15 chr6 96175622 96175687 -93103867 - L1MC4 LINE L1 -1340 6702 6639 8517 167 7 15 chr6 96176428 96178022 -93101532 + L1PB1 LINE L1 3556 5161 -990 384 126 0 115 chr6 96178022 96178108 -93101446 + L1PA10 LINE L1 6092 6168 0 8517 167 7 15 chr6 96178108 96178738 -93100816 + L1PB1 LINE L1 5161 5755 -396 1966 98 0 0 chr6 96178738 96178993 -93100561 + AluSg SINE Alu 55 309 -1 8517 167 7 15 chr6 96178993 96179382 -93100172 + L1PB1 LINE L1 5755 6146 -5 292 313 79 37 chr6 96179411 96180036 -93099518 + L1MEd LINE L1 908 1615 -875 1201 136 63 52 chr6 96180156 96180328 -93099226 - MER33 DNA MER1_type -2261 324 146 1267 201 78 39 chr6 96180328 96180612 -93098942 + AluJo SINE Alu 5 299 -13 1201 136 63 52 chr6 96180612 96180726 -93098828 - MER33 DNA MER1_type -2439 146 35 646 205 58 26 chr6 96180743 96180933 -93098621 + L1MC5 LINE L1 7330 7525 -436 251 274 90 65 chr6 96181014 96181215 -93098339 + L1ME3A LINE L1 5962 6167 -3 30 0 0 0 chr6 96181237 96181267 -93098287 + AT_rich Low_complexity Low_complexity 1 30 0 21 89 0 0 chr6 96181351 96181407 -93098147 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr6 96181513 96181536 -93098018 + AT_rich Low_complexity Low_complexity 1 23 0 1402 157 8 57 chr6 96181633 96181881 -93097673 + AluSx SINE Alu 1 236 -76 418 311 48 4 chr6 96181881 96182154 -93097400 + L1MEd LINE L1 2466 2750 -3379 315 177 0 0 chr6 96182382 96182444 -93097110 + (TG)n Simple_repeat Simple_repeat 1 62 0 14288 196 55 24 chr6 96183012 96183081 -93096473 - L1 LINE L1 -756 6809 6744 4363 44 7 0 chr6 96183081 96183628 -93095926 - L1PA4 LINE L1 -4 6151 5601 14288 196 55 24 chr6 96183628 96186947 -93092607 - L1 LINE L1 -821 6744 3229 1357 109 85 5 chr6 96186947 96187158 -93092396 + MER30 DNA MER1_type 3 230 0 14288 196 55 24 chr6 96187158 96188533 -93091021 - L1 LINE L1 -4336 3229 1897 317 333 19 0 chr6 96188637 96188742 -93090812 - L1 LINE L1 -5501 1985 1879 1976 146 10 0 chr6 96189012 96189300 -93090254 + AluSx SINE Alu 1 291 -21 882 349 31 29 chr6 96189516 96189966 -93089588 - L1 LINE L1 -5503 1983 1533 300 231 240 10 chr6 96190574 96190678 -93088876 - MER5A DNA MER1_type -2 187 60 14949 52 10 0 chr6 96191522 96193454 -93086100 - L1P LINE L1 -1235 4911 2960 12570 53 1 10 chr6 96193450 96195078 -93084476 + L1P LINE L1 1332 2945 -3201 * 399 190 0 0 chr6 96195073 96195152 -93084402 + L1MA7 LINE L1 6046 6124 -167 * 31974 97 12 27 chr6 96195215 96201491 -93078063 + L1PA5 LINE L1 12 6153 -1 23 0 0 0 chr6 96201612 96201635 -93077919 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr6 96202438 96202470 -93077084 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr6 96202558 96202582 -93076972 + AT_rich Low_complexity Low_complexity 1 24 0 253 95 32 32 chr6 96203755 96203818 -93075736 + (TCTCTG)n Simple_repeat Simple_repeat 2 64 0 252 274 34 77 chr6 96204213 96204330 -93075224 + MIR SINE MIR 65 176 -86 297 188 174 0 chr6 96204370 96204439 -93075115 - L2 LINE L2 -1 3312 3232 570 67 0 0 chr6 96205184 96205259 -93074295 + (GA)n Simple_repeat Simple_repeat 2 76 0 1810 164 0 25 chr6 96206246 96206563 -93072991 + AluJo SINE Alu 1 309 -3 24 0 0 0 chr6 96207001 96207025 -93072529 + AT_rich Low_complexity Low_complexity 1 24 0 711 280 80 97 chr6 96207928 96208518 -93071036 + MER21B LTR ERV1 60 639 -224 203 246 18 0 chr6 96209812 96209869 -93069685 + (CA)n Simple_repeat Simple_repeat 2 59 0 1614 209 3 10 chr6 96209906 96210207 -93069347 - AluJo SINE Alu -13 299 1 1428 174 7 69 chr6 96210590 96210895 -93068659 + AluJo SINE Alu 5 290 -22 6599 198 43 52 chr6 96210911 96211298 -93068256 + L1MB7 LINE L1 3497 3886 -2260 4438 168 77 13 chr6 96211298 96212145 -93067409 - MER54A LTR ERVL 0 901 1 6599 198 43 52 chr6 96212145 96213179 -93066375 + L1MB7 LINE L1 3886 4900 -1246 1440 184 0 103 chr6 96213179 96213527 -93066027 - AluJb SINE Alu 0 312 1 6599 198 43 52 chr6 96213527 96213959 -93065595 + L1MB7 LINE L1 4900 5334 -812 1714 190 80 56 chr6 96213961 96214513 -93065041 + MER34B LTR ERV1 1 565 0 2598 170 61 19 chr6 96214516 96215249 -93064305 + L1MB7 LINE L1 5336 6183 -1 823 270 32 61 chr6 96215516 96215860 -93063694 + MER93b LTR ERV1 12 345 -28 1175 212 43 0 chr6 96215860 96216091 -93063463 - AluJo SINE Alu -71 241 1 254 95 0 0 chr6 96216092 96216134 -93063420 + MER57A LTR ERV1 362 403 0 7190 35 10 0 chr6 96216210 96217333 -93062221 + L1PA5 LINE L1 4985 6117 -37 306 0 0 0 chr6 96217339 96217373 -93062181 + (TAA)n Simple_repeat Simple_repeat 3 36 0 2226 109 54 20 chr6 96218489 96218839 -93060715 + THE1B LTR MaLR 1 362 -2 10254 106 58 17 chr6 96218844 96219973 -93059581 + THE1B-int LTR MaLR 3 1211 -369 2246 106 0 0 chr6 96219973 96220265 -93059289 - AluSc SINE Alu -17 292 1 10254 106 58 17 chr6 96220265 96220651 -93058903 + THE1B-int LTR MaLR 1211 1580 0 2193 105 78 20 chr6 96220651 96220995 -93058559 + THE1B LTR MaLR 1 364 0 1972 130 7 19 chr6 96221107 96221414 -93058140 - AluSx SINE Alu -9 303 1 7395 32 0 0 chr6 96222010 96222903 -93056651 + L1P LINE L1 4337 5229 -917 22 35 0 0 chr6 96223240 96223269 -93056285 + AT_rich Low_complexity Low_complexity 1 29 0 36 0 0 0 chr6 96223527 96223563 -93055991 + AT_rich Low_complexity Low_complexity 1 36 0 245 132 94 0 chr6 96224344 96224397 -93055157 - HsTC2 DNA Tc2 -611 1287 1230 * 355 263 0 0 chr6 96224392 96224468 -93055086 - HsTC2 DNA Tc2 -1772 126 51 1482 234 87 61 chr6 96225143 96225651 -93053903 + MER68 LTR ERV1 1 521 -41 795 269 84 59 chr6 96225706 96226111 -93053443 - L2 LINE L2 0 3313 2899 32 95 0 0 chr6 96226203 96226298 -93053256 + AT_rich Low_complexity Low_complexity 1 95 0 496 185 289 7 chr6 96226431 96226566 -93052988 - LTR16A LTR ERVL 0 450 278 4169 174 42 41 chr6 96226577 96228069 -93051485 - L1MB7 LINE L1 -1 6183 4674 435 302 0 9 chr6 96228075 96228191 -93051363 - LTR16A LTR ERVL -306 144 30 1104 273 127 16 chr6 96228489 96228921 -93050633 + L2 LINE L2 2832 3311 -2 180 0 0 0 chr6 96229231 96229251 -93050303 + (GA)n Simple_repeat Simple_repeat 1 20 0 517 303 69 11 chr6 96229716 96229904 -93049650 + MIR SINE MIR 48 246 -16 322 318 45 50 chr6 96231680 96231881 -93047673 + L2 LINE L2 2560 2759 -555 268 282 128 39 chr6 96232109 96232265 -93047289 + L2 LINE L2 3101 3270 -2 291 300 44 11 chr6 96233150 96233240 -93046314 - MIR3 SINE MIR -6 202 110 187 234 0 0 chr6 96233410 96233457 -93046097 - MIR SINE MIR -6 256 210 293 204 0 91 chr6 96233466 96233554 -93046000 + MER116 DNA Mariner 1 80 0 621 246 170 0 chr6 96233555 96233726 -93045828 - MIR SINE MIR -59 203 4 1548 185 0 68 chr6 96234089 96234413 -93045141 + AluJo SINE Alu 1 302 -10 2373 87 3 7 chr6 96234702 96235012 -93044542 - AluSc SINE Alu 0 309 1 25 31 0 0 chr6 96236049 96236081 -93043473 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr6 96236350 96236374 -93043180 + AT_rich Low_complexity Low_complexity 1 24 0 711 177 7 48 chr6 96236844 96236991 -93042563 - AluSq/x SINE Alu -172 141 1 22 0 0 0 chr6 96239774 96239796 -93039758 + AT_rich Low_complexity Low_complexity 1 22 0 850 171 20 0 chr6 96239799 96239951 -93039603 - L1PA16 LINE L1 -9 6157 6003 231 157 39 0 chr6 96241126 96241177 -93038377 + (ATG)n Simple_repeat Simple_repeat 2 54 0 23 33 0 0 chr6 96241239 96241269 -93038285 + AT_rich Low_complexity Low_complexity 1 30 0 249 234 0 0 chr6 96242369 96242433 -93037121 + (TGG)n Simple_repeat Simple_repeat 3 66 0 223 167 0 0 chr6 96242433 96242475 -93037079 + (CAG)n Simple_repeat Simple_repeat 1 42 0 26 50 0 0 chr6 96243654 96243694 -93035860 + AT_rich Low_complexity Low_complexity 1 40 0 376 273 122 0 chr6 96244587 96244726 -93034828 - MER103 DNA DNA -9 157 2 805 212 0 0 chr6 96244935 96245081 -93034473 - FRAM SINE Alu -30 146 1 323 291 52 99 chr6 96245389 96245489 -93034065 - MIR SINE MIR -57 205 119 618 119 90 22 chr6 96245489 96245623 -93033931 + L1MA8 LINE L1 6142 6284 -7 323 291 52 99 chr6 96245623 96245735 -93033819 - MIR SINE MIR -143 119 3 282 256 104 24 chr6 96246088 96246213 -93033341 + MLT1F1 LTR MaLR 379 513 -54 22 35 0 0 chr6 96247064 96247093 -93032461 + AT_rich Low_complexity Low_complexity 1 29 0 422 297 9 0 chr6 96248377 96248488 -93031066 - MIR3 SINE MIR -10 198 87 1777 159 14 3 chr6 96248657 96248946 -93030608 - AluJo SINE Alu -20 292 1 239 188 21 0 chr6 96250624 96250672 -93028882 - MIR3 SINE MIR -10 198 150 23 33 0 0 chr6 96251097 96251127 -93028427 + AT_rich Low_complexity Low_complexity 1 30 0 202 262 0 0 chr6 96251665 96251707 -93027847 - MER91A DNA MER1_type -15 181 140 1141 85 37 0 chr6 96251707 96251871 -93027683 + L1PA8 LINE L1 6000 6169 -3 891 169 36 100 chr6 96252065 96252257 -93027297 + MER65-int LTR ERV1 1493 1663 -3208 525 236 47 8 chr6 96252257 96252384 -93027170 - FLAM_A SINE Alu 0 133 2 891 169 36 100 chr6 96252384 96252470 -93027084 + MER65-int LTR ERV1 1663 1753 -3118 338 292 160 35 chr6 96252534 96252678 -93026876 - MER91A DNA MER1_type -34 162 1 22 35 0 0 chr6 96252934 96252963 -93026591 + AT_rich Low_complexity Low_complexity 1 29 0 1372 220 33 61 chr6 96253371 96253831 -93025723 + LTR37B LTR ERV1 22 468 0 35 41 0 0 chr6 96253899 96253948 -93025606 + AT_rich Low_complexity Low_complexity 1 49 0 930 246 15 5 chr6 96254820 96255023 -93024531 - MER58A DNA MER1_type 0 224 20 258 89 22 22 chr6 96255026 96255071 -93024483 - LTR37B LTR ERV1 -213 255 211 357 297 216 0 chr6 96255322 96255470 -93024084 + MER5A DNA MER1_type 10 189 0 333 0 0 0 chr6 96256192 96256229 -93023325 + (TG)n Simple_repeat Simple_repeat 2 38 0 25 51 0 0 chr6 96256866 96256905 -93022649 + AT_rich Low_complexity Low_complexity 1 39 0 3196 145 16 11 chr6 96258913 96259471 -93020083 + L1MB3 LINE L1 5587 6147 -36 396 71 0 0 chr6 96259573 96259629 -93019925 + (TA)n Simple_repeat Simple_repeat 2 57 0 2319 50 0 78 chr6 96260561 96260883 -93018671 - AluY SINE Alu -14 297 1 2169 85 0 60 chr6 96261456 96261775 -93017779 + AluSx SINE Alu 1 300 -12 217 371 68 8 chr6 96262054 96262186 -93017368 + L2 LINE L2 3134 3273 -40 185 273 40 40 chr6 96262435 96262534 -93017020 - MIR SINE MIR -142 120 22 30 27 0 0 chr6 96266451 96266488 -93013066 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 96267466 96267487 -93012067 + AT_rich Low_complexity Low_complexity 1 21 0 219 69 0 0 chr6 96267550 96267579 -93011975 + (ATG)n Simple_repeat Simple_repeat 1 29 0 278 0 54 0 chr6 96267855 96267892 -93011662 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2181 67 40 14 chr6 96269568 96269865 -93009689 - AluY SINE Alu -6 305 1 22 0 0 0 chr6 96269873 96269895 -93009659 + AT_rich Low_complexity Low_complexity 1 22 0 343 145 0 16 chr6 96269911 96269973 -93009581 - L1PA15 LINE L1 -21 6144 6084 1526 122 9 0 chr6 96269974 96270203 -93009351 - L1PA15 LINE L1 -159 6006 5776 763 268 117 25 chr6 96272626 96273021 -93006533 - L1MC4a LINE L1 -1791 6017 5587 211 337 31 41 chr6 96273160 96273258 -93006296 - MIR3 SINE MIR -23 185 89 871 146 84 56 chr6 96273434 96273647 -93005907 - MER20 DNA MER1_type 0 219 1 9648 179 25 5 chr6 96273754 96276713 -93002841 - L1PA16 LINE L1 -8 6215 3203 14931 186 40 14 chr6 96276718 96277082 -93002472 - L1PB1 LINE L1 -3 6864 6511 222 37 0 0 chr6 96277082 96277109 -93002445 + (TA)n Simple_repeat Simple_repeat 2 28 0 14931 186 40 14 chr6 96277109 96282772 -92996782 - L1PB1 LINE L1 -356 6511 496 1597 45 5 0 chr6 96282772 96282974 -92996580 + L1PA4 LINE L1 5950 6152 -3 14931 186 40 14 chr6 96282974 96283477 -92996077 - L1PB1 LINE L1 -6371 496 7 5934 229 20 18 chr6 96283496 96285852 -92993702 - L1PA16 LINE L1 -2988 3215 797 635 310 87 49 chr6 96286701 96286988 -92992566 - L1M2 LINE L1 -5902 947 650 438 286 6 39 chr6 96287045 96287227 -92992327 - L1M2 LINE L1 -6661 188 13 228 162 0 0 chr6 96287429 96287466 -92992088 - tRNA-Met-e tRNA tRNA -38 37 1 23 0 0 0 chr6 96287479 96287502 -92992052 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr6 96288348 96288376 -92991178 + AT_rich Low_complexity Low_complexity 1 28 0 228 337 34 11 chr6 96289217 96289306 -92990248 - MER117 DNA MER1_type -105 92 2 486 335 4 63 chr6 96289601 96289840 -92989714 + L3 LINE CR1 1349 1573 -4 21 0 0 0 chr6 96289912 96289933 -92989621 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 96291041 96291063 -92988491 + AT_rich Low_complexity Low_complexity 1 22 0 7345 42 1 0 chr6 96291063 96292450 -92987104 - L1PA5 LINE L1 -11 6143 4756 727 245 13 0 chr6 96293847 96294006 -92985548 + MER5A DNA MER1_type 1 161 -28 1853 137 4 12 chr6 96294116 96294426 -92985128 - L1MD3 LINE L1 0 8275 6303 1834 143 0 14 chr6 96294427 96294706 -92984848 + AluJo SINE Alu 1 275 -37 861 140 85 6 chr6 96294716 96294880 -92984674 - L1MD3 LINE L1 -369 6255 6079 * 6504 218 40 10 chr6 96294878 96296514 -92983040 - L1MD3 LINE L1 -777 5649 3964 21 0 0 0 chr6 96296544 96296565 -92982989 + AT_rich Low_complexity Low_complexity 1 21 0 824 193 40 11 chr6 96296640 96296816 -92982738 - MSTD LTR MaLR 0 396 216 481 198 44 0 chr6 96296829 96296920 -92982634 - MSTD LTR MaLR -333 95 1 2361 237 82 23 chr6 96296921 96297965 -92981589 - L1ME1 LINE L1 -112 6054 4963 1943 241 82 36 chr6 96297967 96298437 -92981117 - MLT1F1 LTR MaLR -8 559 60 1829 144 3 28 chr6 96298437 96298751 -92980803 - AluSx SINE Alu 0 307 1 1943 241 82 36 chr6 96298751 96298805 -92980749 - MLT1F1 LTR MaLR -507 60 10 331 191 22 56 chr6 96298813 96298902 -92980652 - L1ME1 LINE L1 -1177 4969 4884 2200 104 3 0 chr6 96299291 96299580 -92979974 - AluSx SINE Alu -22 290 1 8222 175 63 23 chr6 96299582 96303299 -92976255 - L1MD3 LINE L1 -2451 3975 20 503 281 120 23 chr6 96303324 96303541 -92976013 + HERVL LTR ERVL 1949 2186 -3468 2307 311 79 32 chr6 96303546 96305122 -92974432 + HERVL LTR ERVL 2364 4045 -1719 976 288 72 25 chr6 96305178 96305589 -92973965 + HERVL LTR ERVL 4121 4567 -918 1942 117 13 52 chr6 96306633 96306941 -92972613 - AluSx SINE Alu -16 296 1 928 151 0 0 chr6 96306954 96307113 -92972441 - L1MD1 LINE L1 -5 6237 6079 2096 110 10 0 chr6 96307190 96307517 -92972037 + AluY SINE Alu 1 311 0 1758 161 10 26 chr6 96308280 96308590 -92970964 - AluJo SINE Alu -3 309 5 24 0 0 0 chr6 96309599 96309623 -92969931 + AT_rich Low_complexity Low_complexity 1 24 0 1478 155 12 102 chr6 96309643 96309966 -92969588 - AluJo SINE Alu -18 294 1 31 44 0 0 chr6 96311056 96311101 -92968453 + AT_rich Low_complexity Low_complexity 1 45 0 15724 112 28 5 chr6 96311723 96314085 -92965469 + Tigger1 DNA MER2_type 1 2417 -1 181 246 156 82 chr6 96314694 96314816 -92964738 + L2 LINE L2 3158 3288 -25 2209 185 54 38 chr6 96315913 96316491 -92963063 + Charlie1 DNA MER1_type 2064 2650 -111 990 41 0 0 chr6 96316505 96316626 -92962928 - L1PA5 LINE L1 -6 6148 6028 6574 37 2 0 chr6 96316626 96317600 -92961954 + L1PA5 LINE L1 5075 6050 -104 397 198 178 0 chr6 96317600 96317701 -92961853 + Charlie1 DNA MER1_type 2642 2760 -1 1706 141 147 3 chr6 96317714 96318033 -92961521 - MER47A DNA MER2_type -1 365 1 240 250 0 0 chr6 96318033 96318081 -92961473 - L1ME LINE L1 -516 5646 5599 3965 202 67 68 chr6 96318351 96320316 -92959238 - L1ME2 LINE L1 -9 6224 4259 315 219 0 116 chr6 96320307 96320453 -92959101 - L1ME2 LINE L1 -6233 163 35 * 245 339 110 0 chr6 96321016 96321125 -92958429 + L2 LINE L2 2933 3053 -219 242 280 167 45 chr6 96321180 96321312 -92958242 + MIR SINE MIR 20 167 -95 334 371 46 26 chr6 96321366 96321517 -92958037 + L2 LINE L2 3101 3254 -18 1519 194 70 12 chr6 96322045 96322386 -92957168 + MLT1A1 LTR MaLR 1 361 -4 389 209 127 120 chr6 96322801 96323005 -92956549 + MLT1L LTR MaLR 331 539 -76 2093 109 0 30 chr6 96323005 96323309 -92956245 + AluSx SINE Alu 1 295 -17 389 209 127 120 chr6 96323309 96323387 -92956167 + MLT1L LTR MaLR 539 615 0 181 231 0 0 chr6 96323424 96323463 -92956091 + L3 LINE CR1 1532 1570 -7 22 0 0 0 chr6 96323667 96323689 -92955865 + AT_rich Low_complexity Low_complexity 1 22 0 552 269 90 24 chr6 96324469 96324681 -92954873 + MIR SINE MIR 5 230 -32 297 0 0 0 chr6 96324690 96324723 -92954831 + (CA)n Simple_repeat Simple_repeat 2 34 0 908 155 5 15 chr6 96324771 96324991 -92954563 + AluJo SINE Alu 45 300 -12 1651 268 61 27 chr6 96325016 96325882 -92953672 - L2 LINE L2 0 3313 2429 222 338 70 0 chr6 96326497 96326568 -92952986 + MIR SINE MIR 76 151 -111 1162 237 57 24 chr6 96327825 96328158 -92951396 - MER2 DNA MER2_type 0 344 1 941 170 30 12 chr6 96329526 96329691 -92949863 - MER20 DNA MER1_type -4 215 48 389 185 0 25 chr6 96329993 96330074 -92949480 - MER116 DNA Mariner -1 79 1 1828 161 44 10 chr6 96331032 96331212 -92948342 - AluJb SINE Alu -4 308 113 221 75 25 0 chr6 96331212 96331252 -92948302 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 1828 161 44 10 chr6 96331252 96331369 -92948185 - AluJb SINE Alu -199 113 1 24 0 0 0 chr6 96331424 96331448 -92948106 + AT_rich Low_complexity Low_complexity 1 24 0 1877 36 0 0 chr6 96331448 96331672 -92947882 - L1PA3 LINE L1 -3 6152 5929 448 359 100 12 chr6 96331818 96332145 -92947409 + L2 LINE L2 1830 2189 -1125 2368 182 21 2 chr6 96332145 96332563 -92946991 + MSTB LTR MaLR 1 426 0 448 359 100 12 chr6 96332563 96332575 -92946979 + L2 LINE L2 2189 2199 -1115 245 340 158 14 chr6 96332598 96332960 -92946594 + L2 LINE L2 2310 2723 -591 861 205 25 0 chr6 96333009 96333170 -92946384 + MER105 DNA DNA 39 203 -1 237 346 94 55 chr6 96333176 96333505 -92946049 + L2 LINE L2 2826 3167 -105 459 293 48 27 chr6 96334779 96334967 -92944587 + L2 LINE L2 3117 3308 -5 22 0 0 0 chr6 96335826 96335848 -92943706 + AT_rich Low_complexity Low_complexity 1 22 0 1137 262 89 38 chr6 96336431 96336881 -92942673 - L2 LINE L2 -518 2796 2324 264 355 98 41 chr6 96336948 96337266 -92942288 + L2 LINE L2 2472 2807 -507 255 291 41 127 chr6 96337314 96337367 -92942187 + L2 LINE L2 2976 3032 -240 1875 129 0 4 chr6 96337367 96337631 -92941923 - AluSc SINE Alu -12 297 35 255 291 41 127 chr6 96337631 96337821 -92941733 + L2 LINE L2 3032 3198 -74 1979 131 0 0 chr6 96341114 96341389 -92938165 + AluSx SINE Alu 20 294 -18 333 316 29 29 chr6 96341411 96341547 -92938007 - MIR SINE MIR -57 151 16 394 211 229 9 chr6 96341803 96341912 -92937642 - FLAM_A SINE Alu 0 133 1 556 282 119 15 chr6 96342004 96342206 -92937348 + MIR SINE MIR 20 242 -20 21 0 0 0 chr6 96342310 96342331 -92937223 + AT_rich Low_complexity Low_complexity 1 21 0 422 316 70 6 chr6 96342757 96342915 -92936639 + MER117 DNA MER1_type 2 169 -28 718 302 89 4 chr6 96343005 96343263 -92936291 + MLT1J2 LTR MaLR 15 294 -156 2073 139 0 16 chr6 96343852 96344169 -92935385 + AluSx SINE Alu 1 312 0 342 284 121 0 chr6 96344400 96344541 -92935013 - L1ME LINE L1 -452 5669 5512 222 309 73 15 chr6 96345260 96345328 -92934226 + MIR3 SINE MIR 103 174 -34 412 349 20 7 chr6 96345633 96345782 -92933772 + L2 LINE L2 3161 3311 -2 21 0 0 0 chr6 96345855 96345876 -92933678 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr6 96346187 96346229 -92933325 + (CA)n Simple_repeat Simple_repeat 1 42 0 208 244 85 61 chr6 96346701 96346783 -92932771 - L2 LINE L2 -6 3266 3183 21 36 0 0 chr6 96346910 96346938 -92932616 + AT_rich Low_complexity Low_complexity 1 28 0 1041 271 33 67 chr6 96347100 96347580 -92931974 + L1MEd LINE L1 58 521 -5598 762 278 130 0 chr6 96347580 96347879 -92931675 - MER46C DNA MER2_type 0 338 1 1118 256 109 36 chr6 96347880 96348790 -92930764 + L1MEd LINE L1 521 1393 -4738 400 281 55 8 chr6 96349293 96349421 -92930133 - MIR SINE MIR -2 260 127 1407 174 93 4 chr6 96349478 96349760 -92929794 - AluJb SINE Alu 0 305 1 2326 80 3 10 chr6 96350307 96350608 -92928946 - AluSq SINE Alu -12 301 3 1863 115 21 21 chr6 96354399 96354686 -92924868 + AluSx SINE Alu 15 301 -11 199 169 141 14 chr6 96354724 96354795 -92924759 + MIR SINE MIR 182 261 -1 183 100 0 0 chr6 96356123 96356153 -92923401 + (CA)n Simple_repeat Simple_repeat 1 30 0 276 149 0 0 chr6 96356376 96356423 -92923131 + (TG)n Simple_repeat Simple_repeat 2 48 0 1595 156 8 0 chr6 96358592 96358842 -92920712 - AluSx SINE Alu -60 252 1 16711 174 36 23 chr6 96358842 96365444 -92914110 - L1MA3 LINE L1 -354 7370 238 232 215 0 15 chr6 96365760 96365825 -92913729 - L1MC4 LINE L1 -1340 6702 6639 8432 166 7 19 chr6 96366566 96368161 -92911393 + L1PB1 LINE L1 3556 5168 -983 616 39 0 0 chr6 96368161 96368237 -92911317 + L1PA4 LINE L1 6076 6152 -3 8432 166 7 19 chr6 96368237 96368877 -92910677 + L1PB1 LINE L1 5168 5754 -397 1959 98 0 0 chr6 96368877 96369131 -92910423 + AluSg SINE Alu 55 308 -2 8432 166 7 19 chr6 96369131 96369520 -92910034 + L1PB1 LINE L1 5754 6146 -5 292 313 79 37 chr6 96369549 96370174 -92909380 + L1MEd LINE L1 908 1615 -875 1167 138 74 50 chr6 96370294 96370462 -92909092 - MER33 DNA MER1_type -2261 324 145 1299 197 78 39 chr6 96370462 96370746 -92908808 + AluJo SINE Alu 5 299 -13 1167 138 74 50 chr6 96370746 96370860 -92908694 - MER33 DNA MER1_type -2440 145 35 634 211 58 26 chr6 96370877 96371067 -92908487 + L1MC5 LINE L1 7330 7525 -436 251 274 90 65 chr6 96371148 96371349 -92908205 + L1ME3A LINE L1 5962 6167 -3 30 0 0 0 chr6 96371371 96371401 -92908153 + AT_rich Low_complexity Low_complexity 1 30 0 21 89 0 0 chr6 96371485 96371541 -92908013 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr6 96371647 96371670 -92907884 + AT_rich Low_complexity Low_complexity 1 23 0 1402 157 8 57 chr6 96371767 96372015 -92907539 + AluSx SINE Alu 1 236 -76 418 311 48 4 chr6 96372015 96372288 -92907266 + L1MEd LINE L1 2466 2750 -3379 441 145 0 0 chr6 96372516 96372592 -92906962 + (TG)n Simple_repeat Simple_repeat 1 76 0 14268 196 55 25 chr6 96373160 96373229 -92906325 - L1 LINE L1 -756 6809 6744 4325 46 7 2 chr6 96373229 96373777 -92905777 - L1PA4 LINE L1 -4 6151 5601 14268 196 55 25 chr6 96373777 96377096 -92902458 - L1 LINE L1 -821 6744 3230 1357 109 85 5 chr6 96377096 96377307 -92902247 + MER30 DNA MER1_type 3 230 0 14268 196 55 25 chr6 96377307 96378683 -92900871 - L1 LINE L1 -4335 3230 1897 317 333 19 0 chr6 96378787 96378892 -92900662 - L1 LINE L1 -5501 1985 1879 1976 146 10 0 chr6 96379162 96379450 -92900104 + AluSx SINE Alu 1 291 -21 882 349 31 29 chr6 96379666 96380116 -92899438 - L1 LINE L1 -5503 1983 1533 300 231 240 10 chr6 96380724 96380828 -92898726 - MER5A DNA MER1_type -2 187 60 24 100 0 0 chr6 96381738 96381818 -92897736 + AT_rich Low_complexity Low_complexity 1 80 0 364 290 103 70 chr6 96382794 96383066 -92896488 + LTR16A LTR ERVL 92 372 -78 416 277 42 0 chr6 96383095 96383214 -92896340 + HERV16 LTR ERVL 7 130 -4866 234 137 20 20 chr6 96384438 96384489 -92895065 + MIR SINE MIR 88 138 -70 290 154 19 0 chr6 96384493 96384545 -92895009 + MER5B DNA MER1_type 2 54 -124 1904 230 65 73 chr6 96384548 96385598 -92893956 - L1ME3 LINE L1 -197 5965 4925 761 246 34 21 chr6 96385593 96385829 -92893725 - L1ME3 LINE L1 -2395 3751 3513 * 2375 114 22 6 chr6 96386713 96387071 -92892483 + THE1B LTR MaLR 1 364 0 45 75 0 0 chr6 96388550 96388644 -92890910 + AT_rich Low_complexity Low_complexity 1 94 0 424 351 90 16 chr6 96389425 96389747 -92889807 + L2 LINE L2 2538 2883 -431 327 25 0 0 chr6 96390386 96390426 -92889128 + (GA)n Simple_repeat Simple_repeat 1 40 0 1655 168 32 0 chr6 96390495 96390780 -92888774 - AluJb SINE Alu -18 294 1 997 139 0 23 chr6 96390780 96390952 -92888602 - FRAM SINE Alu 0 176 9 5808 118 20 5 chr6 96392304 96393703 -92885851 - L1PA14 LINE L1 -2 6159 4749 5155 87 4 0 chr6 96393867 96394803 -92884751 - L1PA6 LINE L1 -7 6147 5144 4634 217 31 80 chr6 96394918 96395834 -92883720 + L1MC1 LINE L1 3298 4257 -1889 1377 191 68 15 chr6 96395834 96396158 -92883396 + MER2 DNA MER2_type 1 341 -3 4634 217 31 80 chr6 96396158 96396645 -92882909 + L1MC1 LINE L1 4257 4612 -1534 1756 166 14 0 chr6 96396645 96396923 -92882631 + AluSx SINE Alu 1 282 -30 4634 217 31 80 chr6 96396923 96397153 -92882401 + L1MC1 LINE L1 4612 4852 -1294 2109 165 49 32 chr6 96397158 96397698 -92881856 - MLT2A2 LTR ERVL 0 554 1 5878 181 21 11 chr6 96397700 96398959 -92880595 + L1MC1 LINE L1 4855 6100 -233 1548 171 91 4 chr6 96398959 96399233 -92880321 + AluJb SINE Alu 1 298 -14 5878 181 21 11 chr6 96399233 96399345 -92880209 + L1MC1 LINE L1 6100 6209 -124 348 24 0 0 chr6 96399345 96399386 -92880168 + (TG)n Simple_repeat Simple_repeat 1 41 0 5878 181 21 11 chr6 96399386 96399470 -92880084 + L1MC1 LINE L1 6209 6327 -6 217 105 26 53 chr6 96399955 96400031 -92879523 + (TATAA)n Simple_repeat Simple_repeat 5 78 0 408 333 12 37 chr6 96400101 96400263 -92879291 - MIR3 SINE MIR -15 193 36 21 0 0 0 chr6 96400396 96400417 -92879137 + AT_rich Low_complexity Low_complexity 1 21 0 1231 14 0 0 chr6 96400422 96400589 -92878965 - L1PA3 LINE L1 0 6155 6006 209 371 22 11 chr6 96402019 96402108 -92877446 + MIR3 SINE MIR 7 96 -112 692 282 30 38 chr6 96402940 96403202 -92876352 - MIR SINE MIR 0 262 3 189 0 0 0 chr6 96403247 96403268 -92876286 + (CAA)n Simple_repeat Simple_repeat 1 21 0 831 156 22 0 chr6 96403712 96403847 -92875707 - FAM SINE Alu -18 167 30 403 308 0 0 chr6 96404271 96404388 -92875166 - MER94 DNA DNA -16 118 2 233 224 0 0 chr6 96405121 96405170 -92874384 + L2 LINE L2 3265 3313 0 2647 58 0 0 chr6 96405905 96406214 -92873340 - AluY SINE Alu -2 309 1 330 45 0 0 chr6 96406394 96406438 -92873116 + (CA)n Simple_repeat Simple_repeat 1 44 0 206 323 150 57 chr6 96406439 96406603 -92872951 - MIR SINE MIR -61 147 2 228 217 22 0 chr6 96406839 96406885 -92872669 + GA-rich Low_complexity Low_complexity 4 50 0 251 318 123 41 chr6 96407757 96407808 -92871746 + L3 LINE CR1 119 164 -1413 2007 128 0 20 chr6 96407808 96408105 -92871449 - AluSq SINE Alu -20 293 3 251 318 123 41 chr6 96408105 96408223 -92871331 + L3 LINE CR1 164 302 -1275 1720 160 48 83 chr6 96408790 96409165 -92870389 + MLT1A1 LTR MaLR 4 365 0 227 291 12 12 chr6 96409878 96409964 -92869590 + CT-rich Low_complexity Low_complexity 4 89 0 440 278 38 38 chr6 96409979 96410188 -92869366 - MLT1J LTR MaLR -2 509 301 435 313 101 26 chr6 96410444 96410671 -92868883 - MIR SINE MIR 0 262 19 2145 193 97 15 chr6 96411021 96411556 -92867998 + MER63C DNA MER1_type 256 834 -96 495 123 19 161 chr6 96411581 96411736 -92867818 - L1MA5 LINE L1 -2 6298 6166 310 365 74 46 chr6 96411893 96412649 -92866905 - L2 LINE L2 -1359 1955 1179 297 164 0 0 chr6 96412655 96412710 -92866844 + MER63C DNA MER1_type 825 879 -51 760 251 73 26 chr6 96413047 96413483 -92866071 + MLT1H LTR MaLR 3 534 -15 3663 147 55 4 chr6 96413678 96414252 -92865302 + L1PA16 LINE L1 4717 5260 -906 234 0 0 0 chr6 96414252 96414278 -92865276 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3663 147 55 4 chr6 96414278 96414433 -92865121 + L1PA16 LINE L1 5260 5406 -760 3663 124 65 3 chr6 96414433 96415042 -92864512 + L1PA16 LINE L1 5504 6156 -10 3663 147 55 4 chr6 96415042 96415054 -92864500 + L1PA16 LINE L1 5406 6156 -10 25 65 0 0 chr6 96415536 96415582 -92863972 + AT_rich Low_complexity Low_complexity 1 46 0 359 89 18 0 chr6 96415702 96415758 -92863796 + (CA)n Simple_repeat Simple_repeat 1 57 0 2466 47 0 3 chr6 96416083 96416410 -92863144 - AluY SINE Alu 0 326 1 183 80 0 0 chr6 96416512 96416537 -92863017 + (TG)n Simple_repeat Simple_repeat 1 25 0 25 51 0 0 chr6 96416659 96416698 -92862856 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 96416744 96416765 -92862789 + AT_rich Low_complexity Low_complexity 1 21 0 333 238 74 41 chr6 96417644 96417766 -92861788 - L1ME4a LINE L1 -2 6119 5994 40744 33 22 1 chr6 96418764 96424791 -92854763 - L1PA2 LINE L1 -1 6154 1 1432 165 106 33 chr6 96426612 96426885 -92852669 - AluJo SINE Alu -19 293 1 2135 136 40 8 chr6 96426913 96427266 -92852288 - THE1B LTR MaLR 0 364 1 423 298 78 0 chr6 96427449 96427590 -92851964 + MIR3 SINE MIR 16 167 -41 28 61 0 0 chr6 96428021 96428070 -92851484 + AT_rich Low_complexity Low_complexity 1 49 0 1857 162 3 7 chr6 96429529 96429825 -92849729 + AluJo SINE Alu 1 295 -17 384 277 157 6 chr6 96430671 96430830 -92848724 + MIR SINE MIR 21 203 -59 295 133 60 12 chr6 96430960 96431043 -92848511 - MER69 DNA AcHobo -77 2449 2363 720 273 55 6 chr6 96431059 96431385 -92848169 - MER69 DNA AcHobo -268 2258 1917 758 224 102 15 chr6 96431406 96431730 -92847824 - MER69 DNA AcHobo -2130 396 2 211 172 17 17 chr6 96432404 96432462 -92847092 + CT-rich Low_complexity Low_complexity 3 60 0 2782 10 0 0 chr6 96432653 96432959 -92846595 - AluYa5 SINE Alu -5 306 1 1001 255 16 8 chr6 96433652 96433895 -92845659 - MIR SINE MIR 0 262 18 522 108 0 0 chr6 96435146 96435229 -92844325 + (TCCCC)n Simple_repeat Simple_repeat 2 84 0 1669 158 31 38 chr6 96435234 96435526 -92844028 - AluJo SINE Alu -22 290 1 2412 94 3 0 chr6 96435846 96436153 -92843401 - AluSg SINE Alu -2 308 1 237 319 14 0 chr6 96436192 96436261 -92843293 + L2 LINE L2 3193 3262 -10 27 0 0 0 chr6 96436291 96436318 -92843236 + AT_rich Low_complexity Low_complexity 1 27 0 668 165 0 0 chr6 96436319 96436422 -92843132 - FLAM_A SINE Alu -19 123 21 3371 125 65 2 chr6 96436527 96437047 -92842507 - MER41C LTR ERV1 -1 553 1 342 202 10 50 chr6 96437354 96437469 -92842085 - L1MC4 LINE L1 -1 8041 7885 1981 240 121 29 chr6 96437482 96437875 -92841679 - L1MCc LINE L1 -4259 2863 2508 2102 108 11 3 chr6 96437875 96438162 -92841392 - AluSc SINE Alu -20 289 1 1981 240 121 29 chr6 96438162 96438381 -92841173 - L1MCc LINE L1 -4614 2508 2311 2127 149 72 36 chr6 96438381 96438798 -92840756 - MSTB1 LTR MaLR 0 432 1 1981 240 121 29 chr6 96438798 96439386 -92840168 - L1MCc LINE L1 -4811 2311 1779 2377 68 3 0 chr6 96439386 96439678 -92839876 - AluY SINE Alu -18 293 1 1981 240 121 29 chr6 96439678 96440196 -92839358 - L1MCc LINE L1 -5343 1779 796 1185 212 91 32 chr6 96440712 96441117 -92838437 - L1MCc LINE L1 -5957 466 38 721 158 35 12 chr6 96441137 96441308 -92838246 - L1MA4 LINE L1 0 6300 6126 574 299 70 55 chr6 96442045 96442195 -92837359 - HAL1 LINE L1 -1995 512 366 1904 175 0 6 chr6 96442195 96442509 -92837045 - AluJo SINE Alu 0 312 1 574 299 70 55 chr6 96442509 96442830 -92836724 - HAL1 LINE L1 -2141 366 34 1584 273 140 37 chr6 96443050 96443738 -92835816 + L1ME LINE L1 33 649 -5612 1917 130 45 0 chr6 96443738 96444030 -92835524 + AluY SINE Alu 1 305 -6 1584 273 140 37 chr6 96444030 96445089 -92834465 + L1ME LINE L1 649 2056 -4205 23 108 0 0 chr6 96445161 96445254 -92834300 + AT_rich Low_complexity Low_complexity 1 93 0 632 294 95 12 chr6 96445299 96445636 -92833918 + L1ME LINE L1 2143 2507 -3573 188 259 0 69 chr6 96445835 96445893 -92833661 + L2 LINE L2 3256 3309 -4 1462 181 172 20 chr6 96445988 96446442 -92833112 - Charlie1b DNA MER1_type 0 523 1 2213 160 64 21 chr6 96446811 96447009 -92832545 + L1MB8 LINE L1 5515 5703 -475 2388 135 92 2 chr6 96447009 96447402 -92832152 - MSTC LTR MaLR 0 428 1 2213 160 64 21 chr6 96447402 96447673 -92831881 + L1MB8 LINE L1 5703 6004 -174 27 0 0 0 chr6 96447814 96447841 -92831713 + AT_rich Low_complexity Low_complexity 1 27 0 389 306 41 53 chr6 96448199 96448369 -92831185 + L3 LINE CR1 1407 1574 -3 387 141 0 0 chr6 96448811 96448875 -92830679 + (TGGA)n Simple_repeat Simple_repeat 2 65 0 24 0 0 0 chr6 96449106 96449130 -92830424 + AT_rich Low_complexity Low_complexity 1 24 0 13553 131 35 14 chr6 96449325 96450676 -92828878 + Tigger1 DNA MER2_type 1 1322 -1096 2100 143 84 32 chr6 96450676 96451081 -92828473 - MSTA LTR MaLR -2 426 1 13553 131 35 14 chr6 96451081 96451985 -92827569 + Tigger1 DNA MER2_type 1322 2311 -107 1742 160 7 17 chr6 96451985 96452279 -92827275 - AluJo SINE Alu -21 291 1 13553 131 35 14 chr6 96452279 96452390 -92827164 + Tigger1 DNA MER2_type 2311 2418 0 382 184 26 0 chr6 96454015 96454091 -92825463 + Tigger7 DNA MER2_type 93 170 -380 227 95 0 24 chr6 96454099 96454141 -92825413 + Tigger7 DNA MER2_type 2313 2353 -234 1173 118 23 41 chr6 96454141 96454314 -92825240 + AluSq SINE Alu 1 163 -150 279 79 0 0 chr6 96454770 96454808 -92824746 + (TC)n Simple_repeat Simple_repeat 2 39 0 2118 191 101 27 chr6 96454860 96455343 -92824211 + LTR40a LTR ERVL 1 519 0 187 327 0 0 chr6 96455899 96455951 -92823603 + MIR SINE MIR 63 114 -148 2799 135 11 51 chr6 96456468 96456919 -92822635 - Tigger2a DNA MER2_type -1 433 1 213 146 24 0 chr6 96457087 96457128 -92822426 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 1935 148 0 0 chr6 96457129 96457412 -92822142 - AluSx SINE Alu -29 283 1 2940 118 29 27 chr6 96458376 96458858 -92820696 - L1MA4A LINE L1 -306 5997 5515 7622 38 22 2 chr6 96458858 96459997 -92819557 - L1PA5 LINE L1 -2 6152 4992 12009 34 1 10 chr6 96460002 96461457 -92818097 - L1PA5 LINE L1 -1098 5048 3608 1767 158 20 14 chr6 96461719 96462011 -92817543 + AluJb SINE Alu 1 294 -18 1145 252 96 47 chr6 96462069 96462474 -92817080 - LTR16C LTR ERVL 0 491 67 1953 154 0 0 chr6 96462789 96463075 -92816479 + AluSx SINE Alu 1 286 -26 229 255 0 0 chr6 96464416 96464463 -92815091 + (TG)n Simple_repeat Simple_repeat 2 48 0 793 213 46 6 chr6 96465415 96465589 -92813965 + MER3 DNA MER1_type 7 187 -22 233 269 39 0 chr6 96465955 96466007 -92813547 - MLT1L LTR MaLR -235 380 327 223 216 40 54 chr6 96466264 96466338 -92813216 + L2 LINE L2 3200 3272 0 1661 167 0 7 chr6 96466445 96466715 -92812839 + AluJb SINE Alu 1 268 -44 457 132 0 15 chr6 96466715 96466804 -92812750 + AluSg/x SINE Alu 217 304 0 385 290 19 68 chr6 96468451 96468613 -92810941 + MIR SINE MIR 44 197 -65 1709 210 0 0 chr6 96468621 96468931 -92810623 + AluJo SINE Alu 1 310 -2 1690 133 14 44 chr6 96468947 96469183 -92810371 - Tigger7 DNA MER2_type -8 2479 2252 2310 99 0 16 chr6 96469183 96469487 -92810067 - AluSq SINE Alu -14 299 1 1690 133 14 44 chr6 96469487 96469544 -92810010 - Tigger7 DNA MER2_type -235 2252 2195 925 211 6 12 chr6 96469536 96469702 -92809852 - Tigger7 DNA MER2_type -534 171 7 * 953 182 39 6 chr6 96470001 96470182 -92809372 - MER1B DNA MER1_type -77 262 76 4258 164 54 9 chr6 96470822 96471624 -92807930 - L1MB5 LINE L1 -8 6166 5325 822 268 76 48 chr6 96473922 96474460 -92805094 - L1ME4a LINE L1 -112 6009 5457 1722 150 0 62 chr6 96474479 96474786 -92804768 + AluJo SINE Alu 1 288 -24 306 291 39 28 chr6 96475092 96475274 -92804280 - L1MC4a LINE L1 -1921 5887 5704 192 77 0 0 chr6 96475983 96476009 -92803545 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 644 255 83 29 chr6 96477231 96477435 -92802119 + MIR SINE MIR 42 256 -6 293 349 23 0 chr6 96477644 96477730 -92801824 - MER5A DNA MER1_type -93 96 9 397 317 48 14 chr6 96477830 96477975 -92801579 + MIR SINE MIR 5 154 -108 488 182 0 11 chr6 96479594 96479682 -92799872 + MER63 DNA MER1_type 40 752 -310 345 174 0 0 chr6 96479734 96479803 -92799751 + GA-rich Low_complexity Low_complexity 1 69 0 2176 146 19 38 chr6 96480916 96481287 -92798267 + THE1B LTR MaLR 1 364 0 10480 96 87 1 chr6 96481287 96482743 -92796811 + THE1B-int LTR MaLR 1 1580 0 2429 125 22 30 chr6 96482743 96483110 -92796444 + THE1B LTR MaLR 1 364 0 2282 182 73 5 chr6 96483711 96484150 -92795404 - MLT1D LTR MaLR -9 496 28 446 173 19 10 chr6 96485064 96485169 -92794385 + MLT1I LTR MaLR 315 408 -1 396 311 39 108 chr6 96485585 96486022 -92793532 - LTR16C LTR ERVL 0 491 85 296 305 8 25 chr6 96487084 96487202 -92792352 + HAL1 LINE L1 19 134 -2373 23 0 0 0 chr6 96487330 96487353 -92792201 + AT_rich Low_complexity Low_complexity 1 23 0 183 42 0 0 chr6 96487355 96487379 -92792175 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 1960 160 0 3 chr6 96487380 96487668 -92791886 - AluSx SINE Alu -25 287 1 4167 162 31 9 chr6 96487701 96487909 -92791645 - L1MB3 LINE L1 0 6183 5981 569 125 0 0 chr6 96487909 96487989 -92791565 - MADE1 DNA Mariner 0 80 1 4167 162 31 9 chr6 96487989 96488515 -92791039 - L1MB3 LINE L1 -202 5981 5433 2173 129 0 0 chr6 96489319 96489649 -92789905 + AluSx SINE Alu 1 330 0 1870 157 7 3 chr6 96491451 96491750 -92787804 + AluSx SINE Alu 1 300 -12 850 222 0 0 chr6 96491753 96491906 -92787648 + AluJb SINE Alu 137 289 -23 367 221 15 0 chr6 96493835 96493903 -92785651 + AluJ/FLAM SINE Alu 3 71 -231 370 305 0 0 chr6 96494046 96494141 -92785413 - MIR SINE MIR -56 206 112 420 145 0 0 chr6 96494159 96494221 -92785333 - MER58 DNA MER1_type 0 2420 2359 225 308 105 23 chr6 96494534 96494667 -92784887 + L2 LINE L2 3161 3304 -9 240 274 55 41 chr6 96495368 96495441 -92784113 - L2 LINE L2 -1 3271 3198 3632 245 106 14 chr6 96497974 96499394 -92780160 - L2 LINE L2 0 3313 1746 301 278 9 70 chr6 96499413 96499528 -92780026 - L2 LINE L2 -547 2767 2660 428 41 0 0 chr6 96501144 96501193 -92778361 - AluY SINE Alu -262 50 2 1566 221 100 12 chr6 96502311 96502710 -92776844 + MER57B LTR ERV1 1 434 0 1945 143 13 3 chr6 96503961 96504261 -92775293 + AluSx SINE Alu 1 303 -9 539 308 115 0 chr6 96504414 96504648 -92774906 - LTR33 LTR ERVL -248 273 13 2539 62 0 0 chr6 96504673 96504982 -92774572 - AluY SINE Alu -2 309 1 2015 162 0 0 chr6 96505198 96505494 -92774060 + AluJb SINE Alu 1 296 -16 1360 187 95 6 chr6 96505924 96506200 -92773354 + MLT2D LTR ERVL 68 377 -37 315 0 0 0 chr6 96506200 96506235 -92773319 + (CA)n Simple_repeat Simple_repeat 2 36 0 1360 187 95 6 chr6 96506235 96506274 -92773280 + MLT2D LTR ERVL 377 411 -3 253 364 118 20 chr6 96506822 96507017 -92772537 - MIR SINE MIR -48 214 1 10324 195 40 39 chr6 96507090 96509003 -92770551 - L1PB1 LINE L1 -8 6859 4951 1110 132 6 6 chr6 96509003 96509162 -92770392 - AluSx SINE Alu -153 159 1 10324 195 40 39 chr6 96509162 96513803 -92765751 - L1PB1 LINE L1 -1916 4951 6 303 269 223 8 chr6 96513846 96513976 -92765578 + MIR SINE MIR 23 180 -82 1416 64 96 50 chr6 96513978 96514198 -92765356 - MER30 DNA MER1_type 0 230 1 453 297 21 10 chr6 96514789 96514981 -92764573 - MER117 DNA MER1_type -3 194 1 331 267 38 9 chr6 96515167 96515272 -92764282 - MLT1I LTR MaLR -14 395 288 430 221 76 0 chr6 96515388 96515519 -92764035 - MLT1J2 LTR MaLR -290 160 20 1898 134 17 17 chr6 96516257 96516418 -92763136 - AluJb SINE Alu -14 298 135 2195 124 0 0 chr6 96516418 96516717 -92762837 - AluSx SINE Alu -13 299 1 1898 134 17 17 chr6 96516717 96516853 -92762701 - AluJb SINE Alu -176 136 1 288 340 68 32 chr6 96517380 96517630 -92761924 - L2 LINE L2 -159 3113 2855 594 239 112 0 chr6 96517710 96517915 -92761639 - L1M4 LINE L1 -1608 4538 4311 3223 212 66 19 chr6 96517924 96518045 -92761509 + L1ME2 LINE L1 4889 5003 -1161 814 215 91 0 chr6 96518045 96518231 -92761323 + MER3 DNA MER1_type 3 205 -4 3223 212 66 19 chr6 96518231 96518695 -92760859 + L1ME2 LINE L1 5003 5444 -720 2467 153 65 2 chr6 96518695 96519125 -92760429 + MSTB2 LTR MaLR 1 457 0 3223 212 66 19 chr6 96519125 96519723 -92759831 + L1ME2 LINE L1 5444 6133 -31 2731 131 7 33 chr6 96519814 96520215 -92759339 - MER65A LTR ERV1 0 445 56 2288 103 0 10 chr6 96520215 96520525 -92759029 - AluY SINE Alu 0 311 5 2731 131 7 33 chr6 96520525 96520580 -92758974 - MER65A LTR ERV1 -389 56 1 5467 208 33 14 chr6 96520580 96521548 -92758006 - MER65A-int LTR ERV1 0 4871 3922 1549 178 50 58 chr6 96521548 96521730 -92757824 + THE1C LTR MaLR 2 184 -191 1971 155 3 0 chr6 96521730 96522014 -92757540 + AluSx SINE Alu 1 285 -27 243 88 0 0 chr6 96522014 96522048 -92757506 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1549 178 50 58 chr6 96522048 96522241 -92757313 + THE1C LTR MaLR 182 375 0 5467 208 33 14 chr6 96522241 96522515 -92757039 - MER65A-int LTR ERV1 -949 3922 3606 672 213 136 37 chr6 96522516 96522818 -92756736 - MER65A-int LTR ERV1 -4425 2333 1836 686 153 8 48 chr6 96522820 96522927 -92756627 - AluJb SINE Alu -193 119 16 3187 128 6 23 chr6 96522927 96523449 -92756105 + LTR10D LTR ERV1 1 513 0 686 153 8 48 chr6 96523449 96523465 -92756089 - AluJb SINE Alu -296 16 1 7148 196 80 49 chr6 96523467 96525044 -92754510 - MER65A-int LTR ERV1 -2499 2372 846 537 184 0 0 chr6 96525044 96525253 -92754301 - L1PA8 LINE L1 0 6172 6062 2438 58 3 0 chr6 96525253 96525548 -92754006 - AluY SINE Alu -15 296 1 7148 196 80 49 chr6 96525548 96526190 -92753364 - MER65A-int LTR ERV1 -4024 847 83 2405 131 61 21 chr6 96526276 96526704 -92752850 - MER65A LTR ERV1 0 445 1 1749 128 6 22 chr6 96527231 96527582 -92751972 - MER4A LTR ERV1 0 664 261 568 104 31 10 chr6 96527582 96527678 -92751876 - MER4A LTR ERV1 -566 98 1 329 271 48 41 chr6 96528599 96528765 -92750789 + MIR SINE MIR 32 192 -65 428 306 104 12 chr6 96528836 96529009 -92750545 - MER5A DNA MER1_type 0 189 1 215 170 21 0 chr6 96529765 96529812 -92749742 + GA-rich Low_complexity Low_complexity 1 48 0 1259 79 103 28 chr6 96529918 96530132 -92749422 - MER30 DNA MER1_type 0 230 1 322 268 145 22 chr6 96530215 96530353 -92749201 + MIR3 SINE MIR 53 207 -1 2029 99 62 10 chr6 96531433 96531725 -92747829 - AluSx SINE Alu -5 307 1 746 189 75 0 chr6 96531917 96532076 -92747478 - LTR40a LTR ERVL 0 519 349 1114 197 52 12 chr6 96532083 96532513 -92747041 - MLT1D LTR MaLR -7 498 9 1274 206 24 113 chr6 96532515 96532821 -92746733 - MLT1D-int LTR MaLR 0 1371 1116 1478 172 4 4 chr6 96532821 96533059 -92746495 + MER8 DNA MER2_type 2 239 0 1274 206 24 113 chr6 96533059 96533204 -92746350 - MLT1D-int LTR MaLR -255 1116 960 252 232 0 18 chr6 96533429 96533485 -92746069 + GA-rich Low_complexity Low_complexity 2 56 0 365 205 35 70 chr6 96533876 96534047 -92745507 - LTR43 LTR ERV1 -306 296 132 620 310 5 0 chr6 96534197 96534384 -92745170 - MLT1D-int LTR MaLR -523 848 661 1894 188 13 52 chr6 96534434 96534892 -92744662 - MLT1D-int LTR MaLR -711 660 221 1281 83 0 24 chr6 96534892 96535061 -92744493 - AluSc SINE Alu -18 291 127 503 188 97 55 chr6 96535077 96535242 -92744312 - MLT1D-int LTR MaLR -1176 195 24 1277 226 23 28 chr6 96535256 96535610 -92743944 - LTR40a LTR ERVL -165 354 3 393 272 80 56 chr6 96536310 96536560 -92742994 - LTR68 LTR ERV1 -484 256 1 613 245 276 3 chr6 96536774 96537133 -92742421 - LTR16A1 LTR ERVL 0 457 1 688 211 41 14 chr6 96537208 96537355 -92742199 + L2 LINE L2 2670 2820 -494 436 301 60 5 chr6 96537501 96537700 -92741854 - L1MEd LINE L1 -5904 215 6 350 351 22 36 chr6 96537776 96537998 -92741556 - L1MEc LINE L1 -5388 1008 790 2281 253 39 68 chr6 96538152 96539623 -92739931 - L1ME1 LINE L1 -9 6157 4645 2139 180 46 12 chr6 96539623 96540035 -92739519 + MSTB LTR MaLR 1 426 0 2281 253 39 68 chr6 96540035 96540054 -92739500 - L1ME1 LINE L1 -1521 4645 4720 1961 166 10 0 chr6 96540054 96540362 -92739192 - AluSx SINE Alu -1 311 1 2281 253 39 68 chr6 96540362 96540449 -92739105 - L1ME1 LINE L1 -1445 4721 4633 1850 174 0 13 chr6 96540453 96540769 -92738785 - AluJb SINE Alu 0 312 1 25 0 0 0 chr6 96541940 96541965 -92737589 + AT_rich Low_complexity Low_complexity 1 25 0 11078 48 6 0 chr6 96542292 96543758 -92735796 - L1P LINE L1 -3223 2923 1450 12310 179 31 14 chr6 96543758 96545757 -92733797 - L1M1 LINE L1 -743 6105 4170 195 100 0 0 chr6 96545757 96545787 -92733767 + (TTG)n Simple_repeat Simple_repeat 1 30 0 12310 179 31 14 chr6 96545787 96546790 -92732764 - L1M1 LINE L1 -2678 4170 3186 7415 201 112 5 chr6 96546785 96547114 -92732440 - L1M1 LINE L1 -4885 1964 1672 * 1867 125 49 7 chr6 96547114 96547440 -92732114 - AluSx SINE Alu 0 312 1 7415 201 112 5 chr6 96547440 96548873 -92730681 - L1M1 LINE L1 -5177 1672 13 528 261 16 88 chr6 96548969 96549185 -92730369 - L1ME LINE L1 -303 5818 5629 930 169 14 0 chr6 96549185 96549333 -92730221 - FRAM SINE Alu -12 154 5 528 261 16 88 chr6 96549333 96549422 -92730132 - L1ME LINE L1 -492 5629 5535 563 220 17 0 chr6 96549429 96549547 -92730007 - Charlie1a DNA MER1_type -842 613 494 5276 103 12 1 chr6 96549576 96550375 -92729179 - L1PA14 LINE L1 0 6161 5354 456 81 40 0 chr6 96550376 96550450 -92729104 - L1PA10 LINE L1 -1 6167 6091 1641 211 49 28 chr6 96550450 96550918 -92728636 - Charlie1a DNA MER1_type -971 484 7 303 273 128 35 chr6 96551419 96551591 -92727963 - L1MC4a LINE L1 -1605 6203 6016 1144 183 24 9 chr6 96551849 96552062 -92727492 + MER20 DNA MER1_type 1 216 -3 243 211 39 0 chr6 96552338 96552390 -92727164 + MIR SINE MIR 97 150 -112 941 158 0 0 chr6 96553220 96553353 -92726201 + FLAM_C SINE Alu 1 133 -10 22 0 0 0 chr6 96553353 96553375 -92726179 + AT_rich Low_complexity Low_complexity 1 22 0 1933 140 0 41 chr6 96553861 96554175 -92725379 + AluJb SINE Alu 3 303 -9 2265 110 3 0 chr6 96556631 96556932 -92722622 - AluSg SINE Alu -8 302 1 24 0 0 0 chr6 96556935 96556959 -92722595 + AT_rich Low_complexity Low_complexity 1 24 0 202 307 27 13 chr6 96557045 96557120 -92722434 - L3 LINE CR1 -77 1500 1425 345 328 186 0 chr6 96557623 96557800 -92721754 - L3 LINE CR1 -364 1213 1004 343 321 65 69 chr6 96557878 96558124 -92721430 - L3 LINE CR1 -867 710 466 1526 205 69 114 chr6 96559289 96560040 -92719514 + L1ME3A LINE L1 5451 6167 -3 356 171 81 41 chr6 96560412 96560535 -92719019 - L1ME4a LINE L1 -3 6118 5991 304 222 119 24 chr6 96560601 96560727 -92718827 - L1ME4a LINE L1 -259 5862 5725 870 237 70 9 chr6 96561601 96561816 -92717738 - MIR SINE MIR -30 232 5 369 0 0 0 chr6 96561858 96561899 -92717655 + (TG)n Simple_repeat Simple_repeat 2 42 0 247 436 50 0 chr6 96562100 96562240 -92717314 - L2 LINE L2 -5 3267 3121 21 0 0 0 chr6 96562644 96562665 -92716889 + AT_rich Low_complexity Low_complexity 1 21 0 214 186 47 0 chr6 96562731 96562774 -92716780 - MIR SINE MIR -136 126 82 272 210 256 62 chr6 96562861 96563037 -92716517 - L2 LINE L2 -6 3307 3098 258 269 32 32 chr6 96563705 96563798 -92715756 - LTR42 LTR ERVL -402 93 1 549 255 20 26 chr6 96563943 96564096 -92715458 + L2 LINE L2 3162 3313 0 486 152 0 30 chr6 96564710 96564809 -92714745 - L1PA8 LINE L1 -1 6171 6076 1085 196 29 5 chr6 96564892 96565101 -92714453 - AluJb SINE Alu -18 294 81 2116 60 0 19 chr6 96565923 96566190 -92713364 + AluY SINE Alu 43 304 -7 2711 131 21 5 chr6 96567111 96567531 -92712023 - MSTA LTR MaLR 0 428 2 1741 235 200 22 chr6 96567661 96568445 -92711109 - HAL1 LINE L1 -1041 1466 543 1341 153 75 30 chr6 96568478 96568791 -92710763 - MLT1B LTR MaLR 0 390 1 1244 243 51 73 chr6 96568795 96569288 -92710266 - HAL1 LINE L1 -2016 491 10 3214 236 36 3 chr6 96569397 96570085 -92709469 - MER21B LTR ERV1 -105 758 48 369 244 0 13 chr6 96570087 96570165 -92709389 - MER21B LTR ERV1 -768 95 19 298 220 17 0 chr6 96570193 96570252 -92709302 - MER21B LTR ERV1 -792 71 12 5416 121 40 7 chr6 96572005 96572841 -92706713 - Tigger1 DNA MER2_type 0 2418 1556 513 160 85 47 chr6 96572847 96572953 -92706601 + Tigger1 DNA MER2_type 1258 1367 -1051 1887 115 19 22 chr6 96572954 96573267 -92706287 - Tigger1 DNA MER2_type -1552 866 555 2425 38 0 0 chr6 96573901 96574190 -92705364 - L1PA5 LINE L1 -3 6151 5863 940 281 71 23 chr6 96574608 96575175 -92704379 + MER115 DNA AcHobo 8 676 -17 812 135 0 30 chr6 96576220 96576353 -92703201 + FLAM_C SINE Alu 12 140 -3 413 323 96 43 chr6 96578499 96578874 -92700680 + L2 LINE L2 2261 2655 -659 2433 93 0 0 chr6 96579090 96579401 -92700153 + AluSx SINE Alu 1 311 -1 356 340 85 0 chr6 96579505 96579611 -92699943 + L2 LINE L2 3141 3255 -17 2110 122 30 0 chr6 96579613 96579916 -92699638 - AluSx SINE Alu 0 312 1 2369 73 0 13 chr6 96580933 96581233 -92698321 - AluSp SINE Alu -17 296 1 180 97 0 0 chr6 96582094 96582125 -92697429 + (T)n Simple_repeat Simple_repeat 1 31 0 348 206 107 38 chr6 96583032 96583163 -92696391 + MER103 DNA DNA 8 147 -19 263 330 87 29 chr6 96583968 96584141 -92695413 + MIR SINE MIR 35 217 -45 30204 115 26 56 chr6 96584279 96590612 -92688942 + L1PA7 LINE L1 12 6144 -10 414 263 42 34 chr6 96591889 96592007 -92687547 + MIR SINE MIR 86 204 -58 334 158 263 0 chr6 96592798 96592912 -92686642 - L1ME4a LINE L1 -6 6115 5972 738 188 65 7 chr6 96593070 96593224 -92686330 + MER20 DNA MER1_type 57 219 0 352 263 0 0 chr6 96593232 96593312 -92686242 - L1ME4a LINE L1 -297 5824 5745 5160 68 3 0 chr6 96593398 96594055 -92685499 - L1PA7 LINE L1 -15 6139 5481 483 225 109 0 chr6 96595219 96595357 -92684197 - MER103 DNA DNA -3 163 11 24 32 0 0 chr6 96595456 96595487 -92684067 + AT_rich Low_complexity Low_complexity 1 31 0 1308 191 4 8 chr6 96596495 96596757 -92682797 - L1PA16 LINE L1 -17 6149 5889 27 51 0 17 chr6 96596811 96596843 -92682711 + AT_rich Low_complexity Low_complexity 1 33 -25 1279 144 91 117 chr6 96596843 96597141 -92682413 - AluJo SINE Alu -20 292 3 27 51 0 17 chr6 96597141 96597167 -92682387 + AT_rich Low_complexity Low_complexity 33 58 0 5278 85 18 40 chr6 96598237 96599034 -92680520 - MER4E LTR ERV1 0 779 1 22 0 0 0 chr6 96599054 96599076 -92680478 + AT_rich Low_complexity Low_complexity 1 22 0 34 42 0 0 chr6 96599130 96599178 -92680376 + AT_rich Low_complexity Low_complexity 1 48 0 2185 77 0 4 chr6 96599471 96599744 -92679810 + AluSq SINE Alu 36 307 -6 221 309 64 53 chr6 96600332 96600426 -92679128 - L2 LINE L2 -68 3204 3110 389 239 18 110 chr6 96600790 96600953 -92678601 + MIR SINE MIR 14 161 -101 1768 228 48 60 chr6 96601096 96601798 -92677756 + L1MC5 LINE L1 6996 7689 -272 1810 151 78 28 chr6 96603436 96603793 -92675761 + THE1C LTR MaLR 1 375 0 316 94 0 59 chr6 96603972 96604057 -92675497 + (TTTTA)n Simple_repeat Simple_repeat 1 80 0 247 286 98 18 chr6 96604264 96604376 -92675178 + L2 LINE L2 2555 2675 -639 1638 204 49 54 chr6 96604603 96605009 -92674545 - MLT1E2 LTR MaLR -2 624 221 1095 209 37 8 chr6 96605037 96605281 -92674273 - MLT1E2 LTR MaLR -375 251 1 2447 96 8 11 chr6 96605863 96606219 -92673335 + THE1A LTR MaLR 1 355 0 11959 85 3 6 chr6 96606219 96607802 -92671752 + THE1A-int LTR MaLR 1 1578 -2 2080 129 12 21 chr6 96607804 96608144 -92671410 + THE1A LTR MaLR 1 337 -18 819 247 39 8 chr6 96608144 96608399 -92671155 + L1MB8 LINE L1 5914 6176 -2 27 29 0 0 chr6 96608469 96608503 -92671051 + AT_rich Low_complexity Low_complexity 1 34 0 2326 88 3 0 chr6 96608513 96608810 -92670744 + AluSp SINE Alu 7 304 -9 564 324 84 29 chr6 96608817 96609304 -92670250 + HAL1b LINE L1 100 613 -735 2031 124 24 0 chr6 96609722 96610012 -92669542 - AluSq SINE Alu -16 297 1 637 180 99 14 chr6 96610633 96610851 -92668703 - L1ME LINE L1 -720 5442 5208 3204 86 29 2 chr6 96611244 96611697 -92667857 - MER4C LTR ERV1 0 465 1 6249 141 45 54 chr6 96611705 96613009 -92666545 - MER4C-int LTR ERV1 -2 6596 5304 1729 118 8 0 chr6 96613380 96613618 -92665936 - AluSq SINE Alu -16 297 58 8657 141 63 34 chr6 96613637 96613755 -92665799 - MER4C-int LTR ERV1 -1335 5263 5150 2302 94 0 3 chr6 96613755 96614054 -92665500 - AluSq SINE Alu -15 298 1 8657 141 63 34 chr6 96614054 96615719 -92663835 - MER4C-int LTR ERV1 -1448 5150 3428 2690 144 46 53 chr6 96615745 96616418 -92663136 - MER4C-int LTR ERV1 -4475 2283 1616 1716 228 103 86 chr6 96616422 96617180 -92662374 - LTR19C LTR ERV1 -2 777 7 1448 116 30 158 chr6 96617186 96617739 -92661815 - MER4C-int LTR ERV1 -5335 1423 852 2326 163 45 42 chr6 96617740 96618340 -92661214 - MER4C-int LTR ERV1 -3525 1598 1190 233 200 0 20 chr6 96618409 96618459 -92661095 - MER34C LTR ERV1 -360 225 177 403 177 8 34 chr6 96618459 96618548 -92661006 - MER4C-int LTR ERV1 -3219 2727 851 * 1537 215 53 21 chr6 96618543 96618919 -92660635 - MER4C-int LTR ERV1 -4060 2271 1884 1820 194 106 31 chr6 96618920 96619430 -92660124 + LTR10A LTR ERV1 1 548 -61 433 119 0 79 chr6 96619515 96619616 -92659938 - MER4C-int LTR ERV1 -5755 843 751 2309 142 176 14 chr6 96619650 96620157 -92659397 - MER4C-int LTR ERV1 -6009 589 1 2928 111 57 2 chr6 96620160 96620601 -92658953 - MER4C LTR ERV1 0 465 1 288 0 0 0 chr6 96620825 96620857 -92658697 + (GA)n Simple_repeat Simple_repeat 1 32 0 6745 145 18 5 chr6 96621622 96623516 -92656038 - L1MA3 LINE L1 0 6305 4385 13710 97 17 6 chr6 96623519 96624140 -92655414 + MER57-int LTR ERV1 4332 4945 -2592 2105 112 5 59 chr6 96624140 96624515 -92655039 - THE1A LTR MaLR 0 355 1 13710 97 17 6 chr6 96624515 96626638 -92652916 + MER57-int LTR ERV1 4945 7149 -388 721 94 24 31 chr6 96626638 96626765 -92652789 + LTR54B LTR ERV1 6 131 -367 257 68 0 91 chr6 96626765 96626809 -92652745 + MER57-int LTR ERV1 7279 7318 -219 288 0 0 0 chr6 96626815 96626847 -92652707 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 272 100 0 80 chr6 96626848 96626898 -92652656 - MER57-int LTR ERV1 -219 7318 7273 486 86 14 0 chr6 96626967 96627037 -92652517 + MER57-int LTR ERV1 6282 6352 -1185 412 276 94 78 chr6 96627110 96627534 -92652020 - L1MA3 LINE L1 -2591 3555 3125 1513 152 158 15 chr6 96628481 96628809 -92650745 - THE1C LTR MaLR 0 375 1 282 365 17 31 chr6 96629616 96629831 -92649723 - MIR SINE MIR -40 222 14 540 68 0 0 chr6 96631167 96631240 -92648314 + (CA)n Simple_repeat Simple_repeat 1 73 0 499 292 8 0 chr6 96631262 96631382 -92648172 + MIR3 SINE MIR 82 202 -6 337 284 120 0 chr6 96631739 96631922 -92647632 - L1ME4a LINE L1 -18 6103 5899 2251 217 63 48 chr6 96631923 96632633 -92646921 + Charlie1 DNA MER1_type 454 1174 -1587 3922 175 92 35 chr6 96632634 96632996 -92646558 + Charlie1 DNA MER1_type 1686 2026 -735 2105 99 37 0 chr6 96632996 96633290 -92646264 - AluSq SINE Alu -8 305 1 3922 175 92 35 chr6 96633290 96633943 -92645611 + Charlie1 DNA MER1_type 2026 2759 -2 308 304 0 13 chr6 96634450 96634529 -92645025 + L2 LINE L2 3192 3269 -3 214 176 20 39 chr6 96634533 96634584 -92644970 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 372 43 0 0 chr6 96634761 96634807 -92644747 + (TTTC)n Simple_repeat Simple_repeat 4 49 0 216 86 0 29 chr6 96634808 96634832 -92644722 + (TTTCC)n Simple_repeat Simple_repeat 4 28 -9 1965 123 0 4 chr6 96634832 96635108 -92644446 - AluSq SINE Alu -38 275 1 216 86 0 29 chr6 96635108 96635118 -92644436 + (TTTCC)n Simple_repeat Simple_repeat 28 37 0 648 283 110 0 chr6 96635236 96635464 -92644090 + MIR SINE MIR 11 257 -5 496 185 59 8 chr6 96636600 96636719 -92642835 - L1ME3A LINE L1 -199 5971 5847 3699 186 42 37 chr6 96637038 96637279 -92642275 + L1ME1 LINE L1 5171 5409 -757 7163 95 16 20 chr6 96637279 96638352 -92641202 + MER11C LTR ERVK 1 1069 -2 3699 186 42 37 chr6 96638352 96639083 -92640471 + L1ME1 LINE L1 5409 6161 -5 23 33 0 0 chr6 96639887 96639917 -92639637 + AT_rich Low_complexity Low_complexity 1 30 0 682 295 95 8 chr6 96640096 96640337 -92639217 + MIR SINE MIR 1 262 0 407 265 23 23 chr6 96640390 96640522 -92639032 + MER5A DNA MER1_type 23 154 -35 436 273 27 40 chr6 96640582 96640732 -92638822 - MER5A DNA MER1_type -3 186 39 213 39 0 0 chr6 96642288 96642314 -92637240 + (TTG)n Simple_repeat Simple_repeat 2 27 0 568 269 107 32 chr6 96642625 96642878 -92636676 - MLT1L LTR MaLR -2 613 342 294 208 129 30 chr6 96643002 96643103 -92636451 - MIR SINE MIR 0 262 152 826 129 0 0 chr6 96643110 96643226 -92636328 - AluSc SINE Alu -15 294 179 674 260 86 12 chr6 96643344 96643710 -92635844 + LTR16A LTR ERVL 7 450 0 228 181 153 14 chr6 96643908 96643980 -92635574 - L1ME4a LINE L1 -75 6046 5965 22 0 0 0 chr6 96647022 96647044 -92632510 + AT_rich Low_complexity Low_complexity 1 22 0 1332 219 33 39 chr6 96647067 96647428 -92632126 - L1MA10 LINE L1 -10 6324 5966 740 164 0 0 chr6 96647433 96647549 -92632005 + MLT1A1 LTR MaLR 250 365 0 248 103 26 0 chr6 96647555 96647594 -92631960 + L1M1 LINE L1 5734 5773 -529 1328 157 4 0 chr6 96647595 96647831 -92631723 - L1MA10 LINE L1 -350 5962 5726 240 108 27 0 chr6 96647831 96647868 -92631686 - MLT1A1 LTR MaLR -2 394 357 523 176 0 148 chr6 96647952 96648094 -92631460 - MLT1A1 LTR MaLR -171 194 74 1197 104 0 0 chr6 96648094 96648248 -92631306 - AluY SINE Alu -12 299 146 394 143 0 17 chr6 96648300 96648381 -92631173 - L1MA10 LINE L1 -445 5726 5655 207 391 46 20 chr6 96648414 96648565 -92630989 - L2 LINE L2 -17 3255 3101 447 338 89 14 chr6 96648796 96649009 -92630545 - MIR SINE MIR -3 259 31 233 299 62 57 chr6 96649946 96650157 -92629397 - L2 LINE L2 -179 3093 2882 320 306 192 20 chr6 96650389 96650686 -92628868 - L3b LINE CR1 -133 1450 1103 22 0 0 0 chr6 96650764 96650786 -92628768 + AT_rich Low_complexity Low_complexity 1 22 0 2315 85 0 0 chr6 96650850 96651145 -92628409 + AluY SINE Alu 1 295 -16 300 260 96 114 chr6 96651331 96651550 -92628004 + L1MC4 LINE L1 7826 8040 -2 1292 232 92 6 chr6 96652239 96652554 -92627000 + MLT1C LTR MaLR 126 467 0 1911 163 6 13 chr6 96653301 96653614 -92625940 + AluJb SINE Alu 1 311 -1 2398 91 0 3 chr6 96653947 96654254 -92625300 + AluSp SINE Alu 1 306 -7 1905 84 48 0 chr6 96654599 96654848 -92624706 + AluSg SINE Alu 1 261 -49 2198 57 4 11 chr6 96654930 96655211 -92624343 - AluY SINE Alu -8 303 25 25 0 0 0 chr6 96655265 96655290 -92624264 + AT_rich Low_complexity Low_complexity 1 25 0 1449 119 20 0 chr6 96656355 96656557 -92622997 + AluJb SINE Alu 1 206 -106 2216 101 3 28 chr6 96656762 96657080 -92622474 - AluSq SINE Alu -3 310 1 25 0 0 0 chr6 96658788 96658813 -92620741 + AT_rich Low_complexity Low_complexity 1 25 0 305 362 24 0 chr6 96658829 96658956 -92620598 + L2 LINE L2 3161 3290 -23 899 205 72 40 chr6 96659400 96659649 -92619905 + MIR SINE MIR 1 257 -5 247 296 0 0 chr6 96661575 96661656 -92617898 + GA-rich Low_complexity Low_complexity 1 81 0 295 181 0 21 chr6 96661656 96661750 -92617804 + (CGGGG)n Simple_repeat Simple_repeat 3 94 0 768 201 0 0 chr6 96661975 96662129 -92617425 + L1P LINE L1 4570 4723 -1423 215 31 31 0 chr6 96662362 96662394 -92617160 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 24 0 0 0 chr6 96662625 96662649 -92616905 + AT_rich Low_complexity Low_complexity 1 24 0 2211 84 7 17 chr6 96662649 96662945 -92616609 + AluSq SINE Alu 1 293 -20 409 152 0 38 chr6 96662945 96663024 -92616530 - L1PA7 LINE L1 -8 6146 6071 392 297 38 11 chr6 96663272 96663461 -92616093 - MIR SINE MIR -22 240 17 268 214 24 12 chr6 96663716 96663768 -92615786 + (TA)n Simple_repeat Simple_repeat 2 57 -29 2071 173 48 11 chr6 96663768 96664120 -92615434 + MLT1A1 LTR MaLR 1 365 0 268 214 24 12 chr6 96664120 96664151 -92615403 + (TA)n Simple_repeat Simple_repeat 57 86 0 1569 182 0 68 chr6 96664514 96664838 -92614716 - AluJo SINE Alu -10 302 1 208 239 22 0 chr6 96665021 96665067 -92614487 - L2 LINE L2 -2 3270 3224 2365 55 3 7 chr6 96665092 96665385 -92614169 + AluY SINE Alu 1 292 -19 1647 176 11 0 chr6 96665661 96665933 -92613621 - AluJo SINE Alu -9 303 29 401 328 50 25 chr6 96665943 96666141 -92613413 + MIR SINE MIR 39 241 -21 * 471 263 9 9 chr6 96666131 96666245 -92613309 + L2 LINE L2 3197 3310 -3 2397 85 7 0 chr6 96666334 96666640 -92612914 - AluSp SINE Alu -5 308 1 286 265 296 24 chr6 96666666 96666957 -92612597 - L3 LINE CR1 -2 1575 1206 22 35 0 0 chr6 96667235 96667264 -92612290 + AT_rich Low_complexity Low_complexity 1 29 0 366 205 90 115 chr6 96667264 96667383 -92612171 + L1ME4a LINE L1 5699 5813 -308 645 244 0 8 chr6 96667383 96667502 -92612052 + FLAM_A SINE Alu 3 120 -13 366 205 90 115 chr6 96667502 96667582 -92611972 + L1ME4a LINE L1 5813 5893 -228 2090 131 177 11 chr6 96667600 96667967 -92611587 + MSTA LTR MaLR 1 428 0 2450 142 14 32 chr6 96668020 96668463 -92611091 + L1MA4 LINE L1 5865 6299 -1 21 0 0 0 chr6 96668463 96668484 -92611070 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr6 96668575 96668614 -92610940 + AT_rich Low_complexity Low_complexity 1 39 0 369 153 0 0 chr6 96668638 96668710 -92610844 + (CA)n Simple_repeat Simple_repeat 2 73 0 2138 169 47 42 chr6 96668912 96669361 -92610193 + MLT1D LTR MaLR 55 505 0 193 355 107 23 chr6 96669416 96669762 -92609792 - L2 LINE L2 -493 2821 2447 5895 100 7 15 chr6 96670808 96671255 -92608299 - THE1B-int LTR MaLR -774 806 366 2408 81 0 0 chr6 96671255 96671550 -92608004 + AluY SINE Alu 1 295 -16 5895 100 7 15 chr6 96671550 96671913 -92607641 - THE1B-int LTR MaLR -1214 366 2 2465 96 56 34 chr6 96671914 96672270 -92607284 - THE1B LTR MaLR 0 364 1 6514 148 6 1 chr6 96672270 96673247 -92606307 - ERVL-B2 LTR ERVL -608 5156 4175 * 7051 154 10 2 chr6 96673245 96674333 -92605221 - ERVL-B2 LTR ERVL -2049 3715 2619 1741 147 11 0 chr6 96674327 96674593 -92604961 - ERVL-B2 LTR ERVL -3057 2707 2439 * 6118 147 26 5 chr6 96674814 96676250 -92603304 - L1P4 LINE L1 -475 7137 5671 32383 104 17 59 chr6 96676271 96682702 -92596852 - L1PA7 LINE L1 -1 6153 12 4255 139 18 94 chr6 96682701 96682864 -92596690 - L1P4 LINE L1 -1901 5683 5509 * 2369 120 42 28 chr6 96682864 96683223 -92596331 + THE1B LTR MaLR 1 364 0 4255 139 18 94 chr6 96683223 96683677 -92595877 - L1P4 LINE L1 -2075 5509 5150 2008 166 0 6 chr6 96683677 96683991 -92595563 - AluSx SINE Alu 0 312 1 4255 139 18 94 chr6 96683991 96684252 -92595302 - L1P4 LINE L1 -2434 5150 4871 * 5470 198 30 18 chr6 96684234 96684311 -92595243 - L1P4 LINE L1 -5087 2497 2422 354 23 0 0 chr6 96684311 96684354 -92595200 + (TG)n Simple_repeat Simple_repeat 1 43 0 5470 198 30 18 chr6 96684354 96685470 -92594084 - L1P4 LINE L1 -5162 2422 483 2706 174 40 9 chr6 96685475 96686027 -92593527 - L1 LINE L1 -1113 5033 4465 1929 252 75 13 chr6 96686047 96686570 -92592984 - ERVL-B2 LTR ERVL -5188 576 22 2317 190 97 15 chr6 96686596 96687070 -92592484 - MLT2B2 LTR ERVL -2 513 1 24 32 0 0 chr6 96687482 96687513 -92592041 + AT_rich Low_complexity Low_complexity 1 31 0 590 142 177 2 chr6 96687553 96687703 -92591851 + MER33 DNA MER1_type 19 239 -124 1217 128 11 11 chr6 96687732 96687912 -92591642 - FRAM SINE Alu -1 175 1 8380 192 100 23 chr6 96687969 96688030 -92591524 + L1PB4 LINE L1 2795 2850 -3306 2173 118 3 3 chr6 96688030 96688327 -92591227 + AluSx SINE Alu 1 297 -15 8380 192 100 23 chr6 96688327 96689653 -92589901 + L1PB4 LINE L1 2850 4073 -2083 204 40 0 0 chr6 96689653 96689678 -92589876 + (CA)n Simple_repeat Simple_repeat 2 26 0 8380 192 100 23 chr6 96689678 96691403 -92588151 + L1PB4 LINE L1 4073 6154 -2 1163 187 54 143 chr6 96692117 96692545 -92587009 + MLT1B LTR MaLR 1 390 0 24 67 0 0 chr6 96692677 96692722 -92586832 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr6 96692899 96692922 -92586632 + AT_rich Low_complexity Low_complexity 1 23 0 204 274 36 60 chr6 96693503 96693587 -92585967 + MIR SINE MIR 170 251 -11 267 301 108 0 chr6 96693710 96693803 -92585751 - L2 LINE L2 -22 3250 3148 29 28 0 0 chr6 96694224 96694260 -92585294 + AT_rich Low_complexity Low_complexity 1 36 0 1352 193 28 28 chr6 96694742 96695032 -92584522 - AluY SINE Alu -11 290 1 2105 132 3 6 chr6 96695045 96695356 -92584198 - AluSg SINE Alu 0 310 1 229 229 60 60 chr6 96696014 96696097 -92583457 + MLT1K LTR MaLR 188 270 -318 793 178 81 6 chr6 96697488 96697662 -92581892 - MER53 DNA DNA 0 189 3 2193 110 3 3 chr6 96697746 96698045 -92581509 + AluSg SINE Alu 1 299 -11 528 277 1 9 chr6 96698521 96698681 -92580873 + L1M4 LINE L1 4029 4185 -1961 2209 110 7 0 chr6 96698909 96699208 -92580346 + AluSx SINE Alu 1 301 -11 417 250 56 28 chr6 96749881 96750025 -92529529 - MER31-int LTR ERV1 -3953 983 836 1563 187 17 17 chr6 96750214 96750513 -92529041 - L1PA12 LINE L1 -6800 781 483 2614 174 40 9 chr6 96750518 96751070 -92528484 - L1 LINE L1 -1113 5033 4465 1865 252 75 13 chr6 96751090 96751613 -92527941 - ERVL-B2 LTR ERVL -5188 576 22 2110 190 97 15 chr6 96751639 96752113 -92527441 - MLT2B2 LTR ERVL -2 513 1 24 32 0 0 chr6 96752525 96752556 -92526998 + AT_rich Low_complexity Low_complexity 1 31 0 568 137 88 0 chr6 96752596 96752698 -92526856 + MER33 DNA MER1_type 19 129 -195 1206 128 11 11 chr6 96752775 96752955 -92526599 - FRAM SINE Alu -1 175 1 7977 193 100 23 chr6 96753012 96753073 -92526481 + L1PB4 LINE L1 2795 2850 -3306 2155 118 3 3 chr6 96753073 96753370 -92526184 + AluSx SINE Alu 1 297 -15 7977 193 100 23 chr6 96753370 96754696 -92524858 + L1PB4 LINE L1 2850 4073 -2083 204 40 0 0 chr6 96754696 96754721 -92524833 + (CA)n Simple_repeat Simple_repeat 2 26 0 7977 193 100 23 chr6 96754721 96756446 -92523108 + L1PB4 LINE L1 4073 6154 -2 1014 187 54 143 chr6 96757160 96757588 -92521966 + MLT1B LTR MaLR 1 390 0 24 67 0 0 chr6 96757720 96757765 -92521789 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr6 96757942 96757965 -92521589 + AT_rich Low_complexity Low_complexity 1 23 0 216 274 36 60 chr6 96758546 96758630 -92520924 + MIR SINE MIR 170 251 -11 260 301 108 0 chr6 96758753 96758846 -92520708 - L2 LINE L2 -22 3250 3148 29 28 0 0 chr6 96759267 96759303 -92520251 + AT_rich Low_complexity Low_complexity 1 36 0 192 250 62 0 chr6 96759659 96759707 -92519847 - MIR SINE MIR -26 236 186 458 252 29 43 chr6 96759726 96759865 -92519689 + L2 LINE L2 3173 3309 -4 301 113 129 0 chr6 96760114 96760176 -92519378 + L1ME LINE L1 5709 5778 -343 554 304 27 27 chr6 96760187 96760407 -92519147 + MIR SINE MIR 19 238 -24 7056 47 56 0 chr6 96760407 96761458 -92518096 - L1PA7 LINE L1 0 6154 5077 29764 92 11 8 chr6 96761461 96765699 -92513855 - L1PA7 LINE L1 -1885 4261 12 5850 98 25 1 chr6 96765705 96766520 -92513034 - L1P3 LINE L1 -5627 834 1 333 0 0 0 chr6 96766630 96766667 -92512887 + (CA)n Simple_repeat Simple_repeat 2 38 0 229 286 0 0 chr6 96766701 96766757 -92512797 + (CATA)n Simple_repeat Simple_repeat 4 59 0 231 204 159 11 chr6 96766778 96766866 -92512688 + L1ME4a LINE L1 5947 6047 -74 2049 130 7 3 chr6 96767291 96767590 -92511964 + AluSx SINE Alu 1 300 -12 231 283 78 83 chr6 96767773 96767951 -92511603 + MLT1L LTR MaLR 32 208 -407 897 209 139 26 chr6 96767951 96768181 -92511373 - MSTD LTR MaLR 0 396 141 354 274 123 14 chr6 96768287 96768433 -92511121 + L2 LINE L2 3151 3312 -1 615 240 94 5 chr6 96769885 96770077 -92509477 + L1MEc LINE L1 37 245 -6151 498 230 9 9 chr6 96770090 96770203 -92509351 + L1MEc LINE L1 498 610 -5786 1204 230 69 8 chr6 96770812 96771238 -92508316 + MER34B LTR ERV1 64 565 0 1164 220 61 93 chr6 96771550 96772145 -92507409 + LTR49-int LTR ERV1 352 1615 -4648 1755 183 10 3 chr6 96772236 96772536 -92507018 - AluJo SINE Alu -10 302 1 1875 159 37 3 chr6 96772576 96772902 -92506652 - MER1B DNA MER1_type 0 337 1 9596 185 118 94 chr6 96773843 96777653 -92501901 + LTR49-int LTR ERV1 836 4734 -202 728 176 77 6 chr6 96777900 96778070 -92501484 + MER34B LTR ERV1 384 565 0 4296 143 26 8 chr6 96778575 96779342 -92500212 + L1MA4A LINE L1 5516 6296 -7 270 239 39 107 chr6 96779921 96779991 -92499563 - L1MC4 LINE L1 -141 7901 7828 1700 116 74 0 chr6 96779991 96780233 -92499321 + AluSx SINE Alu 35 294 -18 270 239 39 107 chr6 96780233 96780367 -92499187 - L1MC4 LINE L1 -214 7828 7711 201 242 65 32 chr6 96780760 96780822 -92498732 + L2 LINE L2 3153 3216 -56 27 62 0 0 chr6 96781059 96781107 -92498447 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr6 96784116 96784140 -92495414 + AT_rich Low_complexity Low_complexity 1 24 0 34 55 0 0 chr6 96784192 96784247 -92495307 + AT_rich Low_complexity Low_complexity 1 55 0 242 322 124 8 chr6 96785434 96785555 -92493999 - L2 LINE L2 -2 3311 3177 672 93 0 0 chr6 96786023 96786120 -92493434 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 276 254 58 87 chr6 96786293 96786431 -92493123 + MIR SINE MIR 119 252 -10 21 36 0 0 chr6 96786462 96786490 -92493064 + AT_rich Low_complexity Low_complexity 1 28 0 2158 171 59 7 chr6 96787237 96788454 -92491100 + L1PB4 LINE L1 4249 5680 -476 291 28 0 0 chr6 96788454 96788490 -92491064 + (CA)n Simple_repeat Simple_repeat 2 37 0 2074 134 26 0 chr6 96788490 96788832 -92490722 + L1PB4 LINE L1 5803 6153 -3 1944 124 28 10 chr6 96789100 96789391 -92490163 + AluSx SINE Alu 1 296 -16 510 256 85 65 chr6 96789901 96790147 -92489407 + MIR SINE MIR 11 261 -1 26 74 0 0 chr6 96790445 96790499 -92489055 + AT_rich Low_complexity Low_complexity 1 54 0 22 70 0 0 chr6 96790737 96790780 -92488774 + AT_rich Low_complexity Low_complexity 1 43 0 228 35 0 0 chr6 96791229 96791258 -92488296 + (TA)n Simple_repeat Simple_repeat 1 29 0 1996 131 0 52 chr6 96791262 96791591 -92487963 - AluSx SINE Alu 0 312 1 21 36 0 0 chr6 96791965 96791993 -92487561 + AT_rich Low_complexity Low_complexity 1 28 0 771 286 76 64 chr6 96792745 96793293 -92486261 - L2 LINE L2 -4 3309 2762 200 326 54 11 chr6 96794278 96794370 -92485184 + L2 LINE L2 2965 3060 -212 240 343 0 0 chr6 96794557 96794624 -92484930 - L2 LINE L2 -90 3182 3116 476 242 96 22 chr6 96795211 96795389 -92484165 + L2 LINE L2 2554 2744 -570 1138 115 6 0 chr6 96795393 96795550 -92484004 + AluSx SINE Alu 1 158 -154 6947 56 11 0 chr6 96795554 96796605 -92482949 + L1PA8 LINE L1 5133 6192 0 744 247 137 22 chr6 96796629 96796969 -92482585 + L2 LINE L2 2773 3150 -163 980 302 110 14 chr6 96797928 96798355 -92481199 + L2 LINE L2 2842 3309 -4 339 244 24 0 chr6 96798792 96798874 -92480680 - L1MEd LINE L1 -4871 1248 1165 356 309 110 0 chr6 96798896 96799032 -92480522 - L1MEd LINE L1 -5027 1092 942 804 243 89 91 chr6 96799167 96799616 -92479938 - L1MEd LINE L1 -5339 780 333 471 219 46 20 chr6 96799654 96799805 -92479749 - L1MEd LINE L1 -5933 186 32 275 284 20 81 chr6 96800241 96800389 -92479165 + MER20B DNA MER1_type 7 145 -638 191 277 43 0 chr6 96800574 96800621 -92478933 - L2 LINE L2 -86 3186 3138 26 82 0 0 chr6 96800919 96800980 -92478574 + AT_rich Low_complexity Low_complexity 1 61 0 27 0 0 0 chr6 96801377 96801404 -92478150 + AT_rich Low_complexity Low_complexity 1 27 0 2572 61 0 3 chr6 96801801 96802112 -92477442 + AluY SINE Alu 1 310 -1 795 187 104 35 chr6 96802699 96802929 -92476625 + LTR16A1 LTR ERVL 210 455 -2 289 186 29 118 chr6 96804940 96805042 -92474512 - Tigger5 DNA MER2_type 0 2323 2231 310 217 0 0 chr6 96805077 96805137 -92474417 - Tigger5 DNA MER2_type -13 2310 2251 538 247 79 1 chr6 96805141 96805293 -92474261 - MIR SINE MIR -28 180 13 2275 107 0 3 chr6 96805396 96805694 -92473860 - AluSx SINE Alu -15 297 1 31 0 0 0 chr6 96806384 96806415 -92473139 + AT_rich Low_complexity Low_complexity 1 31 0 31 82 0 0 chr6 96806840 96806913 -92472641 + AT_rich Low_complexity Low_complexity 1 73 0 26 50 0 0 chr6 96807618 96807658 -92471896 + AT_rich Low_complexity Low_complexity 1 40 0 28 48 0 0 chr6 96807842 96807884 -92471670 + AT_rich Low_complexity Low_complexity 1 42 0 1323 186 0 4 chr6 96808246 96808482 -92471072 + MER46A DNA MER2_type 1 235 -1 261 179 128 26 chr6 96808513 96808591 -92470963 - HAL1b LINE L1 -655 693 608 352 85 0 34 chr6 96808594 96808653 -92470901 - Alu SINE Alu -1 301 245 841 207 55 5 chr6 96808662 96808879 -92470675 - MER33 DNA MER1_type -96 228 1 348 275 113 19 chr6 96809045 96809205 -92470349 - MIR SINE MIR -86 176 2 1993 144 3 3 chr6 96809247 96809546 -92470008 - AluSq SINE Alu -14 299 1 381 304 20 0 chr6 96809560 96809662 -92469892 - MIR3 SINE MIR -51 157 54 21 36 0 0 chr6 96809723 96809751 -92469803 + AT_rich Low_complexity Low_complexity 1 28 0 7079 37 28 43 chr6 96810383 96811386 -92468168 - L1PA5 LINE L1 -13 6141 5141 * 14631 42 1 5 chr6 96811381 96813210 -92466344 + L1PA5 LINE L1 3317 5138 -1008 803 226 144 84 chr6 96813287 96814025 -92465529 + HAL1b LINE L1 556 1337 -11 305 266 118 65 chr6 96814385 96814554 -92465000 + MLT1J LTR MaLR 277 454 -57 948 238 124 35 chr6 96815111 96815506 -92464048 + MLT1J1 LTR MaLR 3 432 -14 482 210 215 51 chr6 96816054 96816268 -92463286 + MIR SINE MIR 13 261 -1 2218 119 0 0 chr6 96817387 96817697 -92461857 + AluSx SINE Alu 1 310 -2 2273 95 0 3 chr6 96817771 96818067 -92461487 - AluSc SINE Alu -14 295 1 183 305 171 64 chr6 96818609 96819393 -92460161 + L2 LINE L2 1617 2484 -830 2399 123 8 16 chr6 96819399 96819766 -92459788 + THE1B LTR MaLR 1 364 0 2277 112 0 13 chr6 96820846 96821159 -92458395 + AluSx SINE Alu 1 309 -3 2084 131 0 7 chr6 96821576 96821895 -92457659 - AluSx SINE Alu 0 317 1 221 203 108 14 chr6 96822116 96822190 -92457364 - MIR SINE MIR -64 144 64 26 0 0 0 chr6 96822284 96822310 -92457244 + AT_rich Low_complexity Low_complexity 1 26 0 627 254 38 19 chr6 96822663 96822872 -92456682 + L1ME3A LINE L1 5957 6169 -1 2025 104 11 11 chr6 96823284 96823589 -92455965 + AluY SINE Alu 1 305 0 21 0 0 0 chr6 96823950 96823971 -92455583 + AT_rich Low_complexity Low_complexity 1 21 0 2337 75 0 0 chr6 96824312 96824629 -92454925 + AluY SINE Alu 1 317 0 259 200 33 0 chr6 96824684 96824744 -92454810 + (TATG)n Simple_repeat Simple_repeat 3 64 0 1643 100 0 9 chr6 96825831 96826062 -92453492 - AluSg/x SINE Alu 0 312 84 1703 188 3 23 chr6 96826764 96827067 -92452487 - AluJb SINE Alu -15 297 1 21415 50 5 0 chr6 96827552 96831042 -92448512 + L1PA6 LINE L1 2647 6151 -3 764 250 79 8 chr6 96832407 96832647 -92446907 + MIR SINE MIR 2 258 -4 2374 83 3 3 chr6 96832689 96832990 -92446564 - AluSq SINE Alu -12 301 1 345 306 85 34 chr6 96833852 96834146 -92445408 + L1MEc LINE L1 278 586 -5810 2382 263 95 34 chr6 96834242 96834562 -92444992 + L1MEc LINE L1 713 1012 -5384 2323 105 3 0 chr6 96834562 96834866 -92444688 + AluY SINE Alu 1 305 -6 2382 263 95 34 chr6 96834866 96836097 -92443457 + L1MEc LINE L1 1012 2358 -4038 21 0 0 0 chr6 96836344 96836365 -92443189 + AT_rich Low_complexity Low_complexity 1 21 0 900 235 99 72 chr6 96837148 96837313 -92442241 + LTR40b LTR ERVL 2 161 -301 2459 55 0 3 chr6 96837313 96837602 -92441952 + AluY SINE Alu 2 289 -22 900 235 99 72 chr6 96837602 96837868 -92441686 + LTR40b LTR ERVL 161 460 -2 21 36 0 0 chr6 96838867 96838895 -92440659 + AT_rich Low_complexity Low_complexity 1 28 0 600 221 35 66 chr6 96839932 96840190 -92439364 + L1MC5 LINE L1 7621 7870 -91 186 270 225 18 chr6 96840312 96840423 -92439131 - L2 LINE L2 -5 3308 3175 1231 272 60 46 chr6 96840423 96840974 -92438580 - L2 LINE L2 -11 3302 2743 1279 281 98 10 chr6 96840974 96841383 -92438171 - L2 LINE L2 -2522 792 348 300 353 66 31 chr6 96841409 96841746 -92437808 - L2 LINE L2 -222 3091 2744 189 333 128 10 chr6 96843040 96843142 -92436412 - L2 LINE L2 -9 3263 3150 1439 192 15 11 chr6 96843659 96843919 -92435635 + AluJo SINE Alu 1 261 -51 247 196 0 0 chr6 96845285 96845331 -92434223 + L2 LINE L2 3189 3234 -38 305 333 93 32 chr6 96845450 96845795 -92433759 + L2 LINE L2 1817 2182 -1132 461 255 198 14 chr6 96845801 96846013 -92433541 - MIR SINE MIR -6 256 6 183 156 0 0 chr6 96846076 96846108 -92433446 + (CA)n Simple_repeat Simple_repeat 1 32 0 2354 93 0 0 chr6 96846534 96846884 -92432670 + AluSg SINE Alu 1 310 0 3114 181 60 38 chr6 96846894 96846940 -92432614 + L1MB7 LINE L1 5483 5527 -657 2015 147 3 0 chr6 96846940 96847240 -92432314 + AluSx SINE Alu 1 301 -11 3114 181 60 38 chr6 96847240 96847880 -92431674 + L1MB7 LINE L1 5527 6184 0 1653 122 50 97 chr6 96848478 96848840 -92430714 - MER7A DNA MER2_type -3 343 1 625 325 97 32 chr6 96848870 96849467 -92430087 - L2 LINE L2 -4 3309 2671 270 363 70 0 chr6 96851872 96852073 -92427481 + L2 LINE L2 1527 1741 -1573 2156 109 30 7 chr6 96852344 96852683 -92426871 - AluSg SINE Alu 0 346 1 765 333 117 14 chr6 96852716 96853136 -92426418 + L2 LINE L2 2395 2857 -457 803 158 33 105 chr6 96854507 96854794 -92424760 + L1MC/D LINE L1 5177 5447 -743 674 243 12 40 chr6 96854798 96854971 -92424583 + L1MD2 LINE L1 6015 6182 -177 30 0 0 0 chr6 96855591 96855621 -92423933 + AT_rich Low_complexity Low_complexity 1 30 0 392 343 92 32 chr6 96856134 96856398 -92423156 + LTR16C LTR ERVL 89 383 -108 303 49 0 0 chr6 96856398 96856439 -92423115 + (TC)n Simple_repeat Simple_repeat 1 41 0 392 343 92 32 chr6 96856439 96856544 -92423010 + LTR16C LTR ERVL 383 480 -11 1448 350 52 47 chr6 96856573 96858078 -92421476 + HERV16 LTR ERVL 19 1681 -3818 267 31 0 0 chr6 96858078 96858110 -92421444 + (TG)n Simple_repeat Simple_repeat 1 32 0 1448 350 52 47 chr6 96858110 96858512 -92421042 + HERV16 LTR ERVL 1681 2079 -3420 892 321 45 20 chr6 96858514 96858910 -92420644 + ERVL LTR ERVL 1948 2353 -3411 672 337 26 4 chr6 96858952 96859216 -92420338 + ERVL LTR ERVL 2610 2879 -2885 569 311 42 21 chr6 96859391 96859674 -92419880 + ERVL LTR ERVL 3100 3388 -2376 17344 76 34 2 chr6 96859684 96862742 -92416812 + L1PA7 LINE L1 2793 5946 -208 1242 249 154 21 chr6 96862845 96863266 -92416288 + L2 LINE L2 2130 2606 -708 26 0 0 0 chr6 96865520 96865546 -92414008 + AT_rich Low_complexity Low_complexity 1 26 0 377 278 40 0 chr6 96865659 96865785 -92413769 + MLT1J2 LTR MaLR 5 135 -315 259 27 0 0 chr6 96866259 96866296 -92413258 + AluY SINE Alu 262 298 -2 5333 99 52 7 chr6 96866428 96867235 -92412319 - L1PA15 LINE L1 -1 6164 5322 1023 79 0 0 chr6 96867235 96867362 -92412192 - AluSc SINE Alu -19 290 164 3800 108 14 194 chr6 96867362 96868990 -92410564 + pTR5 LTR ERV1 743 2606 0 1335 78 6 0 chr6 96868990 96869156 -92410398 - AluSc SINE Alu -142 167 1 2262 158 20 47 chr6 96869572 96870079 -92409475 + L1MA8 LINE L1 5795 6287 -4 804 141 5 65 chr6 96870387 96870571 -92408983 - L1MB4 LINE L1 -2 6178 6006 5638 155 35 8 chr6 96870667 96872501 -92407053 - L1MA9 LINE L1 -5 6307 4425 4941 190 19 43 chr6 96872521 96873789 -92405765 - L1MA9 LINE L1 -2092 4054 2817 202 318 16 16 chr6 96873907 96873970 -92405584 + MIR3 SINE MIR 112 174 -34 218 180 67 0 chr6 96874771 96874860 -92404694 + (TA)n Simple_repeat Simple_repeat 2 96 0 4163 167 36 23 chr6 96875790 96875882 -92403672 + MER57-int LTR ERV1 6325 6414 -1123 2091 84 10 7 chr6 96875882 96876181 -92403373 - AluY SINE Alu -11 300 1 4163 167 36 23 chr6 96876181 96876856 -92402698 + MER57-int LTR ERV1 6414 7102 -435 707 161 86 35 chr6 96876856 96877030 -92402524 + MER57A LTR ERV1 209 391 -12 3300 71 23 2 chr6 96877192 96877627 -92401927 - MLT2A1 LTR ERVL 0 444 1 2015 152 126 5 chr6 96877761 96878143 -92401411 + MSTA LTR MaLR 1 428 0 1764 181 0 13 chr6 96878712 96879015 -92400539 + AluJo SINE Alu 5 303 -9 3502 176 75 8 chr6 96879170 96879922 -92399632 + L1 LINE L1 3855 4656 -1490 1830 354 61 37 chr6 96880056 96880681 -92398873 + ERVL LTR ERVL 3397 4005 -1759 1945 144 85 15 chr6 96880681 96881021 -92398533 + THE1B LTR MaLR 1 364 0 1830 354 61 37 chr6 96881021 96881817 -92397737 + ERVL LTR ERVL 4005 4853 -911 300 290 20 10 chr6 96882153 96882253 -92397301 + ERVL LTR ERVL 5184 5284 -370 27 49 0 0 chr6 96883559 96883600 -92395954 + AT_rich Low_complexity Low_complexity 1 41 0 6246 54 30 42 chr6 96883770 96884656 -92394898 - SVA Other Other 0 1386 511 5328 81 53 5 chr6 96884823 96885601 -92393953 - SVA Other Other -555 831 17 1622 128 35 17 chr6 96886038 96886328 -92393226 + L1MB2 LINE L1 5877 6171 0 31 0 0 0 chr6 96888045 96888076 -92391478 + AT_rich Low_complexity Low_complexity 1 31 0 1272 29 23 6 chr6 96888849 96889021 -92390533 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1172 164 5 39 chr6 96889029 96889237 -92390317 - L1PA15 LINE L1 -21 6144 5944 29 47 0 0 chr6 96890045 96890088 -92389466 + AT_rich Low_complexity Low_complexity 1 43 0 204 159 0 23 chr6 96890141 96890185 -92389369 + T-rich Low_complexity Low_complexity 2 44 0 22 35 0 0 chr6 96890975 96891004 -92388550 + AT_rich Low_complexity Low_complexity 1 29 0 383 315 62 14 chr6 96892113 96892259 -92387295 - L2 LINE L2 -6 3266 3114 2131 140 0 0 chr6 96892915 96893267 -92386287 - AluSg1 SINE Alu 0 352 1 252 378 156 7 chr6 96893481 96893918 -92385636 - L2 LINE L2 -566 2748 2247 396 0 0 0 chr6 96894349 96894393 -92385161 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 375 306 70 19 chr6 96895020 96895177 -92384377 + MIR SINE MIR 10 174 -88 180 77 0 0 chr6 96896124 96896150 -92383404 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 256 261 109 22 chr6 96896152 96896244 -92383310 - L2 LINE L2 -15 3257 3158 599 213 49 11 chr6 96900720 96900870 -92378684 - MIR SINE MIR -1 261 104 466 245 101 7 chr6 96900911 96901050 -92378504 - MIR SINE MIR -64 198 47 26 0 0 0 chr6 96903608 96903634 -92375920 + AT_rich Low_complexity Low_complexity 1 26 0 317 25 0 0 chr6 96903634 96903674 -92375880 - L1PA6 LINE L1 -7 6147 6108 461 265 250 27 chr6 96903689 96904017 -92375537 + L2 LINE L2 2912 3312 -1 31 0 0 0 chr6 96904090 96904121 -92375433 + AT_rich Low_complexity Low_complexity 1 31 0 1504 154 4 0 chr6 96904129 96904375 -92375179 - L1PB4 LINE L1 -17 6139 5893 428 285 201 5 chr6 96904895 96905109 -92374445 - MIR SINE MIR 0 262 7 364 243 47 19 chr6 96905482 96905589 -92373965 + MER5B DNA MER1_type 1 110 -68 1253 158 0 40 chr6 96905820 96906042 -92373512 - AluJo SINE Alu -24 288 76 2774 137 14 0 chr6 96906586 96907008 -92372546 - MSTA LTR MaLR 0 428 1 25 65 0 0 chr6 96907402 96907448 -92372106 + AT_rich Low_complexity Low_complexity 1 46 0 379 335 19 25 chr6 96909606 96909764 -92369790 + MIR SINE MIR 100 256 -6 208 317 115 34 chr6 96909808 96910016 -92369538 - L2 LINE L2 -221 3051 2827 243 365 93 9 chr6 96910362 96910469 -92369085 + L2 LINE L2 3122 3237 -35 979 135 44 9 chr6 96910505 96910695 -92368859 - L1MA1 LINE L1 -1 6302 6103 243 139 0 0 chr6 96910694 96910737 -92368817 + L1M1 LINE L1 5480 5522 -780 * 331 303 152 6 chr6 96911554 96911732 -92367822 + MIR SINE MIR 49 252 -10 737 305 131 22 chr6 96912027 96912394 -92367160 - MLT1J2 LTR MaLR -41 409 3 186 350 41 10 chr6 96912984 96913081 -92366473 - L2 LINE L2 -50 3263 3164 681 261 6 6 chr6 96913856 96914032 -92365522 + MER5B DNA MER1_type 2 177 -1 1984 123 23 17 chr6 96915073 96915374 -92364180 - AluSx SINE Alu -9 303 1 22 0 0 0 chr6 96917980 96918002 -92361552 + AT_rich Low_complexity Low_complexity 1 22 0 533 260 88 9 chr6 96918087 96918326 -92361228 + MLT2F LTR ERVL 1 303 -360 756 219 12 0 chr6 96918326 96918486 -92361068 - FRAM SINE Alu -5 171 10 1478 214 16 29 chr6 96918486 96918557 -92360997 + MLT2F LTR ERVL 291 361 -302 2023 171 47 64 chr6 96918557 96919071 -92360483 - MLT1D LTR MaLR 0 505 1 1478 214 16 29 chr6 96919071 96919308 -92360246 + MLT2F LTR ERVL 361 595 -68 368 94 35 24 chr6 96919315 96919400 -92360154 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 264 306 14 0 chr6 96919579 96919651 -92359903 - MLT1I LTR MaLR -266 143 71 365 127 0 28 chr6 96921373 96921444 -92358110 + (GAAA)n Simple_repeat Simple_repeat 1 69 0 691 205 0 0 chr6 96921501 96921623 -92357931 + FLAM_A SINE Alu 8 129 -13 269 296 214 8 chr6 96922001 96922244 -92357310 - L1M4 LINE L1 -1365 4781 4489 180 0 0 0 chr6 96922307 96922327 -92357227 + (CAA)n Simple_repeat Simple_repeat 2 21 0 27 49 0 0 chr6 96922412 96922453 -92357101 + AT_rich Low_complexity Low_complexity 1 41 0 1533 235 49 89 chr6 96924476 96925388 -92354166 - L1MC5 LINE L1 -446 7515 6640 2265 134 19 25 chr6 96925462 96925828 -92353726 - THE1B LTR MaLR 0 364 1 11261 100 7 13 chr6 96925828 96926928 -92352626 - THE1B-int LTR MaLR 0 1580 490 2456 77 0 3 chr6 96926928 96927240 -92352314 - AluY SINE Alu 0 311 1 11261 100 7 13 chr6 96927240 96927728 -92351826 - THE1B-int LTR MaLR -1090 490 1 2146 144 19 25 chr6 96927728 96928090 -92351464 - THE1B LTR MaLR 0 364 5 270 0 0 0 chr6 96928149 96928179 -92351375 + (TATTG)n Simple_repeat Simple_repeat 1 30 0 3509 162 17 52 chr6 96928298 96929275 -92350279 + L1MA6 LINE L1 4606 5540 -745 2685 158 12 46 chr6 96929275 96929841 -92349713 + L1MA6 LINE L1 5746 6294 -6 258 190 114 63 chr6 96930025 96930104 -92349450 - MLT1J2 LTR MaLR -309 141 59 321 279 118 15 chr6 96930242 96930378 -92349176 - MLT1L LTR MaLR -425 190 41 251 253 36 24 chr6 96931029 96931112 -92348442 + MIR3 SINE MIR 97 180 -28 230 0 33 0 chr6 96931187 96931217 -92348337 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 980 56 0 0 chr6 96931218 96931344 -92348210 - L1PA13 LINE L1 -12 6151 6026 1354 112 0 5 chr6 96932090 96932295 -92347259 + L1PA13 LINE L1 5960 6163 0 6291 95 22 4 chr6 96932681 96933707 -92345847 - L1PA13 LINE L1 0 6163 5129 28 29 0 0 chr6 96984743 96984778 -92294776 + AT_rich Low_complexity Low_complexity 1 35 0 323 309 41 16 chr6 96985329 96985452 -92294102 - MER117 DNA MER1_type -28 169 44 21 0 0 0 chr6 96986716 96986737 -92292817 + AT_rich Low_complexity Low_complexity 1 21 0 447 35 0 0 chr6 96986784 96986841 -92292713 + (CA)n Simple_repeat Simple_repeat 2 58 0 370 155 12 12 chr6 96987118 96987202 -92292352 + MER53 DNA DNA 8 91 -98 236 204 0 65 chr6 96987550 96987643 -92291911 + (TTAA)n Simple_repeat Simple_repeat 2 88 0 410 299 31 31 chr6 96987643 96987770 -92291784 + L2 LINE L2 3168 3294 -19 1670 193 0 10 chr6 96987871 96988167 -92291387 - AluJb SINE Alu -19 293 1 442 299 59 59 chr6 96988213 96988337 -92291217 + L1MC4a LINE L1 4489 4612 -1534 2117 94 10 23 chr6 96988337 96988636 -92290918 - AluSq SINE Alu -18 295 1 442 299 59 59 chr6 96988636 96988835 -92290719 + L1MC4a LINE L1 4611 4812 -1334 368 301 33 47 chr6 96988869 96989432 -92290122 + L1MC4a LINE L1 4891 5315 -831 347 248 88 22 chr6 96989483 96989620 -92289934 + L1MC4a LINE L1 5737 5882 -1926 313 266 11 11 chr6 96989659 96989753 -92289801 + (TA)n Simple_repeat Simple_repeat 1 94 0 355 322 46 33 chr6 96991356 96991508 -92288046 + L2 LINE L2 3160 3313 0 464 278 172 0 chr6 96991509 96991689 -92287865 + MIR SINE MIR 49 259 -3 2182 141 36 53 chr6 96992140 96992609 -92286945 + L1MA7 LINE L1 5782 6242 -49 22 56 0 0 chr6 96992753 96992789 -92286765 + AT_rich Low_complexity Low_complexity 1 36 0 454 302 75 38 chr6 96993154 96993472 -92286082 - L1MEc LINE L1 -4122 2188 1859 314 306 92 48 chr6 96993553 96994072 -92285482 - L1MEc LINE L1 -4584 1726 1185 887 313 94 52 chr6 96994083 96995152 -92284402 - L1MEc LINE L1 -5004 1115 2 1909 159 71 6 chr6 96995431 96995782 -92283772 + L1MC3 LINE L1 6798 7171 -614 2708 86 0 8 chr6 96995792 96996164 -92283390 - L1PB1 LINE L1 -1 6150 5782 289 276 23 0 chr6 96996171 96996258 -92283296 - L1MC4 LINE L1 -1339 6703 6615 234 243 29 0 chr6 96996274 96996344 -92283210 + (TA)n Simple_repeat Simple_repeat 1 72 0 15828 158 54 13 chr6 96996344 96997642 -92281912 - L1P5 LINE L1 -360 6507 5264 2885 6 0 0 chr6 96997642 96997953 -92281601 - AluYa5 SINE Alu 0 311 1 15828 158 54 13 chr6 96997953 97002898 -92276656 - L1P5 LINE L1 -1603 5264 1 3003 197 38 0 chr6 97002905 97003514 -92276040 + L1MC3 LINE L1 7154 7785 0 281 328 8 30 chr6 97003848 97003862 -92275692 - MIR SINE MIR -90 172 159 1902 184 16 27 chr6 97003862 97004231 -92275323 - MLT1A1 LTR MaLR 0 365 1 281 328 8 30 chr6 97004231 97004350 -92275204 - MIR SINE MIR -103 159 42 562 244 53 0 chr6 97004379 97004510 -92275044 + MIR3 SINE MIR 56 193 -15 2270 161 32 48 chr6 97005059 97005180 -92274374 + MSTA LTR MaLR 1 122 -306 1786 163 152 11 chr6 97005180 97005555 -92273999 - MSTA LTR MaLR 0 428 1 2270 161 32 48 chr6 97005555 97005868 -92273686 + MSTA LTR MaLR 122 428 0 1820 320 88 57 chr6 97006188 97007688 -92271866 + L2 LINE L2 1729 3272 0 2530 172 78 8 chr6 97009756 97010278 -92269276 - MER89 LTR ERV1 0 559 1 28 29 0 0 chr6 97012712 97012747 -92266807 + AT_rich Low_complexity Low_complexity 1 35 0 357 145 0 0 chr6 97013223 97013285 -92266269 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 28 29 0 0 chr6 97013355 97013390 -92266164 + AT_rich Low_complexity Low_complexity 1 35 0 36 23 0 0 chr6 97013564 97013607 -92265947 + AT_rich Low_complexity Low_complexity 1 43 0 422 279 106 6 chr6 97013755 97013916 -92265638 + MIR SINE MIR 20 196 -66 306 277 102 58 chr6 97013965 97014102 -92265452 - MIR SINE MIR -10 252 110 412 264 10 33 chr6 97014506 97014693 -92264861 - MLT1J2 LTR MaLR 0 426 273 268 211 28 28 chr6 97016068 97016139 -92263415 - MER5A DNA MER1_type -76 113 43 2503 154 9 37 chr6 97016275 97016711 -92262843 + MSTB LTR MaLR 1 424 -2 200 267 50 50 chr6 97016787 97016907 -92262647 + MIR SINE MIR 31 150 -112 793 268 139 39 chr6 97016982 97017493 -92262061 + L2 LINE L2 2752 3311 -2 426 269 25 62 chr6 97018600 97018767 -92260787 - MIR SINE MIR -61 147 17 617 283 113 5 chr6 97019245 97019457 -92260097 + MIR SINE MIR 3 237 -25 1398 153 13 4 chr6 97019670 97019905 -92259649 - L1PA16 LINE L1 -9 6157 5921 615 182 99 0 chr6 97019910 97020031 -92259523 - FRAM SINE Alu -43 133 1 421 246 40 8 chr6 97020083 97020209 -92259345 + MARNA DNA Mariner 446 575 -11 609 115 0 0 chr6 97021354 97021450 -92258104 + (CA)n Simple_repeat Simple_repeat 2 97 0 285 89 0 0 chr6 97021451 97021496 -92258058 + (GA)n Simple_repeat Simple_repeat 1 45 0 231 88 0 0 chr6 97024763 97024797 -92254757 + (TAA)n Simple_repeat Simple_repeat 3 36 0 197 299 15 75 chr6 97025405 97025539 -92254015 - MIR SINE MIR -17 245 120 34606 35 9 0 chr6 97025754 97030794 -92248760 - L1PA3 LINE L1 0 6155 1078 854 10 0 0 chr6 97030778 97030877 -92248677 - L1PA3 LINE L1 -6047 99 1 * 1802 173 0 7 chr6 97030877 97031222 -92248332 - AluJb SINE Alu 0 343 1 476 303 76 15 chr6 97032152 97032350 -92247204 - MIR SINE MIR -51 211 2 521 152 43 0 chr6 97032690 97032782 -92246772 - L1PB4 LINE L1 -24 6132 6037 252 100 0 0 chr6 97032944 97032984 -92246570 + (TG)n Simple_repeat Simple_repeat 1 40 0 816 282 63 3 chr6 97034821 97035200 -92244354 + L1ME4a LINE L1 5717 6118 -3 2346 125 27 8 chr6 97035244 97035612 -92243942 + THE1C LTR MaLR 1 375 0 13111 179 19 9 chr6 97036358 97037626 -92241928 - L1M1 LINE L1 -743 6105 4851 2834 105 19 9 chr6 97037626 97038046 -92241508 + L1PA11 LINE L1 5750 6173 -1 13111 179 19 9 chr6 97038046 97038576 -92240978 - L1M1 LINE L1 -1997 4851 4328 351 0 0 0 chr6 97038576 97038615 -92240939 + (TG)n Simple_repeat Simple_repeat 2 40 0 13111 179 19 9 chr6 97038615 97039652 -92239902 - L1M1 LINE L1 -2520 4328 3323 10723 197 20 19 chr6 97039654 97040005 -92239549 - L1M1 LINE L1 -3587 3261 2912 1646 193 7 23 chr6 97040005 97040311 -92239243 - AluJo SINE Alu -11 301 1 10723 197 20 19 chr6 97040311 97042464 -92237090 - L1M1 LINE L1 -3936 2912 757 216 273 0 18 chr6 97042732 97042777 -92236777 + (TG)n Simple_repeat Simple_repeat 2 47 -8 776 188 143 0 chr6 97042777 97042931 -92236623 - MER45A DNA AcHobo -2 176 1 216 273 0 18 chr6 97042931 97042940 -92236614 + (TG)n Simple_repeat Simple_repeat 47 55 0 1583 100 4 4 chr6 97042941 97043170 -92236384 - L1PB2 LINE L1 0 6151 5923 862 216 0 0 chr6 97043178 97043331 -92236223 + L1M2 LINE L1 1282 1434 -5415 * 4602 108 10 2 chr6 97043327 97044139 -92235415 - L1PB2 LINE L1 -236 5915 5096 1337 224 4 8 chr6 97044168 97044427 -92235127 - L1M1 LINE L1 -6361 488 231 8686 175 17 13 chr6 97044427 97046424 -92233130 - L1M2 LINE L1 -696 5616 3611 6293 138 7 7 chr6 97046429 97047890 -92231664 + L1PB1 LINE L1 4690 6149 -2 2719 201 23 15 chr6 97047904 97048293 -92231261 - L1M2 LINE L1 -2522 3624 3226 2032 145 0 0 chr6 97048293 97048583 -92230971 - AluSx SINE Alu -22 290 1 2719 201 23 15 chr6 97048583 97048855 -92230699 - L1M2 LINE L1 -2920 3226 2958 34 0 0 0 chr6 97048978 97049012 -92230542 + AT_rich Low_complexity Low_complexity 1 34 0 733 352 47 24 chr6 97049639 97050293 -92229261 - L2 LINE L2 -106 3207 2534 312 242 30 0 chr6 97051639 97051705 -92227849 + L2 LINE L2 3204 3271 -1 21 57 0 0 chr6 97052722 97052757 -92226797 + AT_rich Low_complexity Low_complexity 1 35 0 1294 239 70 36 chr6 97054392 97054832 -92224722 - LTR16A1 LTR ERVL 0 457 3 218 371 38 0 chr6 97055344 97055449 -92224105 - MIR3 SINE MIR -34 174 66 318 180 16 16 chr6 97055755 97055816 -92223738 + L2 LINE L2 3251 3311 -2 183 323 15 31 chr6 97055824 97055889 -92223665 - MIR SINE MIR -100 108 45 800 148 0 0 chr6 97056006 97056134 -92223420 + L1PA15 LINE L1 6035 6162 -3 318 339 23 6 chr6 97056491 97056665 -92222889 + L1MEd LINE L1 4 180 -5939 835 76 49 0 chr6 97056673 97056817 -92222737 + GA-rich Low_complexity Low_complexity 2 152 0 262 218 59 20 chr6 97057084 97057185 -92222369 + L1ME4a LINE L1 6012 6116 -5 448 268 189 43 chr6 97057204 97057596 -92221958 + L1MCc LINE L1 23 471 -5952 298 340 85 14 chr6 97057849 97057979 -92221575 + L1MCc LINE L1 813 955 -5468 1761 48 22 9 chr6 97057979 97058210 -92221344 + L1PA7 LINE L1 5920 6153 -1 1869 87 30 0 chr6 97058219 97058484 -92221070 - L1PA10 LINE L1 -420 5748 5476 2672 78 25 38 chr6 97058494 97058892 -92220662 + L1PA10 LINE L1 5776 6168 0 1261 258 65 56 chr6 97058893 97059754 -92219800 + L1MCc LINE L1 953 1813 -4889 200 108 0 27 chr6 97059755 97059792 -92219762 + (GAA)n Simple_repeat Simple_repeat 1 36 0 441 178 0 0 chr6 97059884 97059974 -92219580 - MLT1D LTR MaLR 0 505 416 926 240 104 52 chr6 97060031 97060693 -92218861 + L1MCc LINE L1 2078 2714 -4227 22 56 0 0 chr6 97061466 97061502 -92218052 + AT_rich Low_complexity Low_complexity 1 36 0 182 352 23 0 chr6 97061838 97061926 -92217628 + L2 LINE L2 2948 3037 -235 593 299 123 5 chr6 97062117 97062328 -92217226 + MIR SINE MIR 24 259 -3 507 275 14 21 chr6 97063297 97063439 -92216115 - MIR SINE MIR -114 148 8 2353 107 3 0 chr6 97063890 97064199 -92215355 + AluSx SINE Alu 1 310 -2 379 289 46 60 chr6 97064713 97064931 -92214623 - MIR SINE MIR -14 248 34 26 0 0 0 chr6 97065335 97065361 -92214193 + AT_rich Low_complexity Low_complexity 1 26 0 2059 119 0 50 chr6 97065375 97065695 -92213859 + AluSx SINE Alu 1 312 0 253 0 0 0 chr6 97065841 97065869 -92213685 + (TTTA)n Simple_repeat Simple_repeat 1 172 0 1987 146 4 0 chr6 97065869 97066150 -92213404 - AluSx SINE Alu -1 309 1 930 235 54 14 chr6 97067201 97067422 -92212132 + MIR SINE MIR 12 241 -21 340 222 44 0 chr6 97069783 97069873 -92209681 - MER103 DNA DNA -9 157 64 313 261 15 2 chr6 97070131 97070208 -92209346 + MIR SINE MIR 63 140 -68 22 56 0 0 chr6 97070329 97070365 -92209189 + AT_rich Low_complexity Low_complexity 1 36 0 207 269 60 0 chr6 97071150 97071217 -92208337 + MIR SINE MIR 184 254 -8 327 285 120 6 chr6 97073085 97073243 -92206311 + L1ME4a LINE L1 5709 5884 -237 2172 108 10 0 chr6 97078763 97079058 -92200496 - AluSx SINE Alu -14 298 1 271 293 79 18 chr6 97079165 97079296 -92200258 - MIR SINE MIR -78 184 45 648 215 38 8 chr6 97079651 97079817 -92199737 + MIR SINE MIR 52 218 -44 1046 223 73 82 chr6 97079818 97080284 -92199270 - MLT1C LTR MaLR 0 467 6 917 232 0 23 chr6 97080370 97080547 -92199007 + MER5B DNA MER1_type 1 173 -5 369 252 0 0 chr6 97084584 97084687 -92194867 - L1ME4a LINE L1 -211 5910 5808 25 75 0 0 chr6 97084845 97084898 -92194656 + AT_rich Low_complexity Low_complexity 1 53 0 591 156 15 30 chr6 97085258 97085393 -92194161 + L1MA4 LINE L1 6162 6294 -6 25 0 0 0 chr6 97086135 97086160 -92193394 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr6 97086751 97086788 -92192766 + AT_rich Low_complexity Low_complexity 1 37 0 846 215 42 33 chr6 97088530 97088744 -92190810 - MIR SINE MIR 0 262 47 399 248 7 51 chr6 97089099 97089236 -92190318 - L1ME4a LINE L1 0 6121 5991 31 76 0 0 chr6 97089332 97089398 -92190156 + AT_rich Low_complexity Low_complexity 1 66 0 322 306 136 41 chr6 97089780 97090394 -92189160 - L1ME4a LINE L1 -772 5374 4788 708 300 9 24 chr6 97092121 97092331 -92187223 - MIR SINE MIR -35 227 21 334 311 66 52 chr6 97092361 97092573 -92186981 - L1ME4a LINE L1 -423 5755 5541 214 319 32 11 chr6 97092616 97092710 -92186844 - L2 LINE L2 -22 3250 3155 692 132 0 8 chr6 97093080 97093201 -92186353 + (TTCC)n Simple_repeat Simple_repeat 1 120 0 263 261 15 0 chr6 97093918 97093983 -92185571 + MIR SINE MIR 1 66 -196 241 335 81 27 chr6 97094144 97094291 -92185263 - MIR SINE MIR -64 144 29 367 331 32 32 chr6 97094589 97094713 -92184841 + L2 LINE L2 3149 3272 0 21 0 0 0 chr6 97095060 97095081 -92184473 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 97095236 97095264 -92184290 + AT_rich Low_complexity Low_complexity 1 28 0 192 97 0 0 chr6 97095890 97095921 -92183633 + (CA)n Simple_repeat Simple_repeat 2 32 0 872 283 35 0 chr6 97096751 97096977 -92182577 + MIR SINE MIR 3 236 -26 504 0 0 0 chr6 97097070 97097126 -92182428 + (TA)n Simple_repeat Simple_repeat 2 57 0 6576 58 2 0 chr6 97097326 97098151 -92181403 + L1PA8 LINE L1 5343 6169 -3 186 275 65 80 chr6 97098641 97098779 -92180775 + MIR3 SINE MIR 8 143 -65 529 232 141 32 chr6 97098970 97099041 -92180513 - MER110A LTR ERV1 -1 467 405 2160 90 14 0 chr6 97099041 97099319 -92180235 - AluSx SINE Alu -30 282 1 529 232 141 32 chr6 97099319 97099467 -92180087 - MER110A LTR ERV1 -63 405 224 317 351 155 20 chr6 97100061 97100519 -92179035 + L2 LINE L2 1745 2264 -1050 381 333 40 13 chr6 97101409 97101559 -92177995 + MIR SINE MIR 3 156 -106 502 227 34 8 chr6 97101644 97101763 -92177791 + MER94 DNA DNA 13 134 0 311 370 63 0 chr6 97102698 97102825 -92176729 + L2 LINE L2 3136 3270 -2 551 165 0 35 chr6 97103656 97103771 -92175783 + FRAM SINE Alu 66 176 0 193 308 57 70 chr6 97103851 97104078 -92175476 - L2 LINE L2 -213 3059 2836 1142 244 21 0 chr6 97104300 97104542 -92175012 + MIR SINE MIR 6 252 -10 553 265 78 51 chr6 97104568 97104825 -92174729 - L2 LINE L2 -936 2378 2115 285 29 0 0 chr6 97106016 97106050 -92173504 + (TC)n Simple_repeat Simple_repeat 1 34 0 219 36 0 0 chr6 97106049 97106077 -92173477 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 407 280 135 19 chr6 97107069 97107276 -92172278 + L2 LINE L2 3046 3276 -37 254 237 11 21 chr6 97107819 97107912 -92171642 + (TA)n Simple_repeat Simple_repeat 2 93 0 504 299 130 24 chr6 97108171 97108378 -92171176 - MIR SINE MIR -14 248 20 223 297 139 30 chr6 97108497 97108598 -92170956 + MIR3 SINE MIR 87 198 -10 25 31 0 0 chr6 97108622 97108654 -92170900 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr6 97108771 97108801 -92170753 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr6 97110219 97110255 -92169299 + AT_rich Low_complexity Low_complexity 1 36 0 979 265 55 87 chr6 97111913 97112351 -92167203 + L2 LINE L2 2890 3313 0 214 381 25 0 chr6 97112354 97112472 -92167082 + L2 LINE L2 3193 3313 0 4960 45 8 0 chr6 97112870 97113474 -92166080 + L1PA5 LINE L1 5546 6154 0 22 70 0 0 chr6 97114216 97114259 -92165295 + AT_rich Low_complexity Low_complexity 1 43 0 1183 250 75 44 chr6 97115197 97115625 -92163929 + MLT1C LTR MaLR 6 446 -21 229 223 209 108 chr6 97115689 97115754 -92163800 + L3 LINE CR1 1033 1090 -487 1951 155 3 0 chr6 97115754 97116051 -92163503 - AluJo SINE Alu -14 298 1 229 223 209 108 chr6 97116051 97116133 -92163421 + L3 LINE CR1 1090 1195 -382 1798 156 0 10 chr6 97116179 97116491 -92163063 + AluJb SINE Alu 1 309 0 32 26 0 0 chr6 97116670 97116709 -92162845 + AT_rich Low_complexity Low_complexity 1 39 0 260 234 162 18 chr6 97116801 97116912 -92162642 + MIR SINE MIR 62 188 -74 1576 179 29 10 chr6 97218115 97218427 -92061127 + MLT1A1 LTR MaLR 48 365 0 569 317 14 39 chr6 97218433 97218717 -92060837 + MLT2F LTR ERVL 385 661 -2 1882 169 29 3 chr6 97218860 97219173 -92060381 - MLT1A1 LTR MaLR -44 321 1 370 98 16 0 chr6 97222076 97222137 -92057417 + (TC)n Simple_repeat Simple_repeat 2 63 0 640 244 72 22 chr6 97222137 97222317 -92057237 + MLT1A2 LTR MaLR 173 361 -13 22 0 0 0 chr6 97223428 97223450 -92056104 + AT_rich Low_complexity Low_complexity 1 22 0 1588 164 0 59 chr6 97223450 97223755 -92055799 - AluSx SINE Alu -23 289 3 307 248 133 0 chr6 97223777 97223885 -92055669 - MIR SINE MIR -55 153 30 22 0 0 0 chr6 97224316 97224338 -92055216 + AT_rich Low_complexity Low_complexity 1 22 0 507 245 161 0 chr6 97224583 97224726 -92054828 + MIR SINE MIR 97 262 0 1031 118 18 18 chr6 97225836 97226006 -92053548 + L1PA15 LINE L1 5990 6159 -6 337 289 109 8 chr6 97226295 97226423 -92053131 + MIR SINE MIR 117 257 -5 2120 102 0 3 chr6 97226711 97227019 -92052535 + AluSg SINE Alu 1 307 0 851 186 36 0 chr6 97227738 97227905 -92051649 + MER115 DNA AcHobo 489 661 -32 2116 103 0 0 chr6 97227924 97228225 -92051329 + L1PA13 LINE L1 5860 6160 -3 270 0 0 0 chr6 97229545 97229575 -92049979 + (CA)n Simple_repeat Simple_repeat 2 31 0 264 77 0 0 chr6 97231315 97231354 -92048200 + (CA)n Simple_repeat Simple_repeat 2 40 0 251 267 0 8 chr6 97231400 97231531 -92048023 + (CA)n Simple_repeat Simple_repeat 1 130 0 220 236 36 18 chr6 97231784 97231839 -92047715 + L2 LINE L2 3209 3264 -8 484 317 18 90 chr6 97231868 97232202 -92047352 + HAL1 LINE L1 1 310 -2197 415 271 41 37 chr6 97232427 97232668 -92046886 - MER41B LTR ERV1 -205 430 55 267 234 16 16 chr6 97232791 97232855 -92046699 + HAL1 LINE L1 329 392 -2115 5713 92 11 37 chr6 97233094 97233951 -92045603 + L1PA13 LINE L1 5328 6161 -2 1079 249 60 72 chr6 97233950 97234620 -92044934 + HAL1 LINE L1 1030 1691 -816 * 535 273 161 15 chr6 97234667 97234872 -92044682 - MIR SINE MIR -26 236 2 504 248 81 27 chr6 97234892 97235114 -92044440 + HAL1 LINE L1 2075 2308 -199 240 191 21 0 chr6 97235117 97235164 -92044390 + L2 LINE L2 3224 3271 -1 1781 167 58 0 chr6 97235344 97235518 -92044036 - AluJo SINE Alu -1 311 112 234 0 0 0 chr6 97235518 97235544 -92044010 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 1781 167 58 0 chr6 97235544 97235663 -92043891 - AluJo SINE Alu -200 112 1 2910 13 0 0 chr6 97237401 97237719 -92041835 + AluYb8 SINE Alu 1 318 0 318 289 113 25 chr6 97237897 97238101 -92041453 + L2 LINE L2 1812 2033 -1281 419 267 97 42 chr6 97238110 97238275 -92041279 + L2 LINE L2 3104 3277 -36 1554 179 27 7 chr6 97238369 97238666 -92040888 + AluJb SINE Alu 5 307 -5 2149 116 20 0 chr6 97238890 97239193 -92040361 + AluSc SINE Alu 1 309 0 208 320 13 13 chr6 97240314 97240392 -92039162 - L2 LINE L2 -16 3256 3179 181 322 91 50 chr6 97240565 97240686 -92038868 - L2 LINE L2 -249 3023 2898 286 422 17 0 chr6 97240867 97241047 -92038507 - L2 LINE L2 -575 2739 2557 629 276 38 17 chr6 97241149 97241388 -92038166 + MER102b DNA MER1_type 85 328 -13 254 352 0 0 chr6 97241991 97242079 -92037475 - L2 LINE L2 -892 2422 2335 774 219 144 23 chr6 97242896 97243111 -92036443 + MIR SINE MIR 21 261 -1 369 357 55 20 chr6 97243119 97243318 -92036236 + MIR SINE MIR 57 262 0 221 320 0 27 chr6 97243630 97243705 -92035849 + MIR SINE MIR 182 254 -8 191 88 29 0 chr6 97243706 97243740 -92035814 + (TTA)n Simple_repeat Simple_repeat 1 35 0 27 29 0 0 chr6 97244220 97244254 -92035300 + AT_rich Low_complexity Low_complexity 1 34 0 366 223 246 17 chr6 97244323 97244498 -92035056 - MIR SINE MIR -28 234 20 712 244 130 29 chr6 97244606 97244922 -92034632 - MER7A DNA MER2_type 0 346 1 201 121 0 0 chr6 97244984 97245017 -92034537 + (TAATG)n Simple_repeat Simple_repeat 3 35 0 1045 193 39 65 chr6 97245042 97245348 -92034206 + L1ME2 LINE L1 5817 6114 -50 354 290 157 66 chr6 97245479 97245524 -92034030 + L1 LINE L1 2315 2354 -3792 1839 118 3 88 chr6 97245524 97245855 -92033699 + AluSx SINE Alu 1 303 -9 354 290 157 66 chr6 97245855 97246281 -92033273 + L1 LINE L1 2354 2829 -3317 2627 151 35 60 chr6 97246282 97246820 -92032734 + LTR26B LTR ERV1 1 525 -6 379 305 100 11 chr6 97246820 97247010 -92032544 + L1 LINE L1 2822 3028 -3118 4153 118 29 35 chr6 97247012 97247727 -92031827 - MER50 LTR ERV1 -23 711 1 253 274 108 48 chr6 97247846 97248383 -92031171 + L1 LINE L1 3073 3641 -2505 1361 172 27 15 chr6 97248497 97248759 -92030795 + MLT2A2 LTR ERVL 2 266 -187 252 314 152 0 chr6 97249756 97249861 -92029693 - L2 LINE L2 -5 3267 3147 21 0 0 0 chr6 97250289 97250310 -92029244 + AT_rich Low_complexity Low_complexity 1 21 0 362 291 76 4 chr6 97251246 97251372 -92028182 + MIR SINE MIR 19 153 -55 277 263 26 0 chr6 97251373 97251449 -92028105 - MER112 DNA MER1_type 0 260 183 357 24 0 0 chr6 97251466 97251490 -92028064 + (GGATG)n Simple_repeat Simple_repeat 1 66 0 357 24 0 0 chr6 97251490 97251532 -92028022 + (GGATG)n Simple_repeat Simple_repeat 5 46 0 186 150 0 0 chr6 97251975 97252015 -92027539 + (TG)n Simple_repeat Simple_repeat 2 41 0 182 257 0 0 chr6 97252065 97252100 -92027454 + MIR3 SINE MIR 151 185 -23 268 308 13 0 chr6 97252630 97252708 -92026846 + L2 LINE L2 3226 3304 -9 494 227 45 8 chr6 97252915 97253047 -92026507 + L2 LINE L2 1979 2115 -1199 800 149 45 0 chr6 97253065 97253199 -92026355 - MER63 DNA MER1_type -70 766 1 485 296 11 79 chr6 97253470 97253901 -92025653 - L1MEd LINE L1 -4642 1921 1368 216 0 0 0 chr6 97253915 97253939 -92025615 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 374 289 50 21 chr6 97253944 97254329 -92025225 - L1PA2 LINE L1 -2 6136 855 392 355 37 5 chr6 97254370 97254587 -92024967 - L1MEd LINE L1 -5333 1039 816 564 89 10 30 chr6 97255217 97255318 -92024236 - L1MA9 LINE L1 0 6312 6214 829 240 10 10 chr6 97257176 97257368 -92022186 - MIR SINE MIR -16 246 55 237 178 0 0 chr6 97258146 97258191 -92021363 + (TA)n Simple_repeat Simple_repeat 1 45 0 2451 77 0 3 chr6 97261266 97261565 -92017989 - AluSc SINE Alu -11 298 1 267 202 0 75 chr6 97261740 97261834 -92017720 + MER112 DNA MER1_type 143 229 -31 195 42 0 0 chr6 97262068 97262092 -92017462 + (A)n Simple_repeat Simple_repeat 1 24 0 309 253 51 0 chr6 97262444 97262523 -92017031 - L1ME4a LINE L1 -48 6073 5991 21 71 0 0 chr6 97262585 97262627 -92016927 + AT_rich Low_complexity Low_complexity 1 42 0 490 238 58 26 chr6 97262644 97262833 -92016721 - L1ME4a LINE L1 -320 5801 5607 336 248 100 13 chr6 97264239 97264397 -92015157 - MLT1L LTR MaLR -324 187 4 1830 147 10 33 chr6 97264897 97265203 -92014351 + AluSq SINE Alu 1 299 -14 41856 48 3 3 chr6 97265203 97271359 -92008195 + L1PA4 LINE L1 4 6155 0 191 308 87 10 chr6 97271961 97272065 -92007489 + MIR SINE MIR 65 176 -86 236 323 108 0 chr6 97272072 97272165 -92007389 - L2 LINE L2 -10 3262 3160 345 125 0 0 chr6 97273673 97273729 -92005825 + (TG)n Simple_repeat Simple_repeat 1 56 0 184 171 24 0 chr6 97273862 97273902 -92005652 - L2 LINE L2 0 3313 3273 204 357 60 0 chr6 97273902 97273986 -92005568 + MIR SINE MIR 4 92 -170 904 288 4 16 chr6 97274066 97274316 -92005238 + MIR SINE MIR 6 252 -10 646 157 14 57 chr6 97276023 97276163 -92003391 + Charlie5 DNA MER1_type 6 139 -2473 847 189 79 0 chr6 97276177 97276405 -92003149 + Charlie5 DNA MER1_type 2379 2624 0 327 49 0 0 chr6 97276744 97276785 -92002769 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 25 0 0 0 chr6 97277448 97277473 -92002081 + AT_rich Low_complexity Low_complexity 1 25 0 469 63 0 0 chr6 97277505 97277568 -92001986 - Alu SINE Alu -12 297 235 5018 122 30 8 chr6 97277568 97278331 -92001223 - LTR17 LTR ERV1 0 780 1 2242 68 0 0 chr6 97278331 97278623 -92000931 - HERV17 LTR ERV1 0 8626 8335 304 26 0 0 chr6 97278613 97278652 -92000902 - HERV17 LTR ERV1 -1078 7548 7510 * 39895 67 10 2 chr6 97278648 97283986 -91995568 - HERV17 LTR ERV1 -1479 7147 1772 2716 64 3 34 chr6 97284089 97284477 -91995077 - HERV17 LTR ERV1 -6716 1910 1535 255 197 212 0 chr6 97284491 97284557 -91994997 + LTR8 LTR ERV1 174 253 -438 5234 90 34 13 chr6 97284559 97285508 -91994046 - Harlequin LTR ERV1 -5176 1720 704 3961 97 14 24 chr6 97285802 97286422 -91993132 - Harlequin LTR ERV1 -7919 707 94 22 56 0 0 chr6 97287023 97287059 -91992495 + AT_rich Low_complexity Low_complexity 1 36 0 245 179 103 39 chr6 97287253 97287331 -91992223 - MLT1H LTR MaLR -25 524 442 852 183 0 0 chr6 97287406 97287559 -91991995 - MER58B DNA MER1_type 0 341 189 257 323 31 77 chr6 97287628 97287823 -91991731 + MER5A DNA MER1_type 2 187 -2 * 862 271 6 0 chr6 97287659 97287836 -91991718 - MER5A DNA MER1_type -8 181 4 450 245 72 58 chr6 97287836 97288044 -91991510 - MLT1H LTR MaLR -210 339 129 465 304 6 25 chr6 97289882 97290040 -91989514 + L2 LINE L2 3158 3312 -1 1997 137 20 0 chr6 97290142 97290492 -91989062 - L1MB3 LINE L1 -41 6142 5786 1805 163 21 12 chr6 97290492 97290824 -91988730 + MER2 DNA MER2_type 1 335 -10 2551 185 15 20 chr6 97290824 97291495 -91988059 - L1MB3 LINE L1 -400 5783 5116 356 311 89 22 chr6 97291509 97291689 -91987865 + MIR SINE MIR 5 196 -66 1100 215 0 0 chr6 97291817 97292022 -91987532 + AluJb SINE Alu 96 300 -12 192 200 0 0 chr6 97292515 97292555 -91986999 + CT-rich Low_complexity Low_complexity 5 44 0 459 329 63 0 chr6 97292628 97292786 -91986768 + MIR SINE MIR 35 202 -60 942 186 33 38 chr6 97293560 97293770 -91985784 - MER3 DNA MER1_type 0 209 1 607 90 45 0 chr6 97293929 97294018 -91985536 + MSTC LTR MaLR 1 93 -335 3124 69 2 7 chr6 97294025 97294444 -91985110 + L1PA8 LINE L1 5750 6166 -6 1711 166 28 25 chr6 97294548 97294874 -91984680 + MSTC LTR MaLR 102 428 0 289 385 90 6 chr6 97294890 97295046 -91984508 + L2 LINE L2 3104 3272 0 180 182 0 0 chr6 97296167 97296211 -91983343 + A-rich Low_complexity Low_complexity 1 44 0 2445 80 0 0 chr6 97297125 97297426 -91982128 - AluSq SINE Alu -10 303 3 408 40 0 0 chr6 97297917 97297967 -91981587 + (TA)n Simple_repeat Simple_repeat 2 51 0 218 366 0 0 chr6 97298015 97298097 -91981457 + L2 LINE L2 3228 3309 -4 294 29 0 0 chr6 97298286 97298321 -91981233 + (CTA)n Simple_repeat Simple_repeat 1 35 0 4363 166 34 21 chr6 97298371 97299435 -91980119 + L1MB8 LINE L1 5101 6173 -5 214 373 25 8 chr6 97300045 97300163 -91979391 - MIR3 SINE MIR -2 206 87 27 81 0 0 chr6 97301573 97301635 -91977919 + AT_rich Low_complexity Low_complexity 1 62 0 22 0 0 0 chr6 97302039 97302061 -91977493 + AT_rich Low_complexity Low_complexity 1 22 0 345 356 73 26 chr6 97307382 97307573 -91971981 + MIR3 SINE MIR 6 205 -3 23 0 0 0 chr6 97309301 97309324 -91970230 + AT_rich Low_complexity Low_complexity 1 23 0 237 258 180 0 chr6 97309798 97309887 -91969667 + LTR67 LTR ERVL 401 505 -52 391 326 114 52 chr6 97311615 97312020 -91967534 - L3b LINE CR1 -25 1558 1129 183 293 170 0 chr6 97312940 97313046 -91966508 - MIR SINE MIR -2 260 137 183 135 0 81 chr6 97313088 97313125 -91966429 - MIR SINE MIR -222 40 7 180 179 0 0 chr6 97313354 97313393 -91966161 + GA-rich Low_complexity Low_complexity 1 39 0 28 29 0 0 chr6 97313483 97313518 -91966036 + AT_rich Low_complexity Low_complexity 1 35 0 195 101 71 30 chr6 97313538 97313637 -91965917 + (TTATA)n Simple_repeat Simple_repeat 4 106 0 360 172 65 18 chr6 97313647 97313816 -91965738 + (TA)n Simple_repeat Simple_repeat 2 178 0 455 98 0 0 chr6 97313842 97313903 -91965651 + U6 snRNA snRNA 2 62 -45 23 0 0 0 chr6 97313945 97313968 -91965586 + AT_rich Low_complexity Low_complexity 1 23 0 441 243 58 26 chr6 97315864 97316053 -91963501 + L1ME4a LINE L1 5607 5801 -320 21 71 0 0 chr6 97316070 97316112 -91963442 + AT_rich Low_complexity Low_complexity 1 42 0 298 241 51 0 chr6 97316174 97316253 -91963301 + L1ME4a LINE L1 5991 6073 -48 195 42 0 0 chr6 97316605 97316629 -91962925 + (T)n Simple_repeat Simple_repeat 1 24 0 244 202 0 75 chr6 97316863 97316957 -91962597 - MER112 DNA MER1_type -31 229 143 2453 77 0 3 chr6 97317132 97317430 -91962124 + AluSc SINE Alu 1 297 -12 215 322 94 60 chr6 97320900 97321049 -91958505 + L2 LINE L2 3030 3183 -89 2243 124 0 3 chr6 97321051 97321357 -91958197 - AluSx SINE Alu -7 305 1 2020 176 28 8 chr6 97321770 97322129 -91957425 + MLT2D LTR ERVL 1 366 -48 180 111 0 0 chr6 97322140 97322167 -91957387 + (TC)n Simple_repeat Simple_repeat 2 28 0 195 100 0 0 chr6 97322167 97322197 -91957357 + (CA)n Simple_repeat Simple_repeat 2 31 0 26 74 0 0 chr6 97324860 97324914 -91954640 + AT_rich Low_complexity Low_complexity 1 54 0 26 0 0 0 chr6 97324951 97324977 -91954577 + AT_rich Low_complexity Low_complexity 1 26 0 2299 106 0 6 chr6 97325254 97325565 -91953989 + AluSg SINE Alu 1 309 -1 216 189 0 19 chr6 97331123 97331176 -91948378 + (CCG)n Simple_repeat Simple_repeat 2 53 0 27 0 0 0 chr6 97331310 97331337 -91948217 + GC_rich Low_complexity Low_complexity 1 27 0 2111 57 0 39 chr6 97332786 97333067 -91946487 + AluSc SINE Alu 1 270 -39 189 74 0 0 chr6 97333067 97333094 -91946460 + (TCTCTG)n Simple_repeat Simple_repeat 3 29 0 198 167 0 0 chr6 97333095 97333131 -91946423 + (TA)n Simple_repeat Simple_repeat 2 37 0 231 114 0 0 chr6 97339698 97339733 -91939821 + (T)n Simple_repeat Simple_repeat 1 35 0 324 0 0 0 chr6 97340236 97340272 -91939282 + (TG)n Simple_repeat Simple_repeat 2 37 0 302 67 22 0 chr6 97343701 97343746 -91935808 + (ATG)n Simple_repeat Simple_repeat 2 47 0 184 250 162 15 chr6 97343909 97343977 -91935577 + MIR SINE MIR 28 105 -157 210 37 0 0 chr6 97343979 97344006 -91935548 + (TC)n Simple_repeat Simple_repeat 2 28 0 270 305 144 30 chr6 97345137 97345304 -91934250 + MIR3 SINE MIR 16 201 -7 243 344 94 0 chr6 97345423 97345551 -91934003 + L2 LINE L2 3173 3312 -1 1724 168 31 20 chr6 97345599 97345891 -91933663 + AluJo SINE Alu 1 295 -17 749 260 76 81 chr6 97347239 97347685 -91931869 - MLT1J2 LTR MaLR -3 447 4 392 281 6 23 chr6 97349039 97349188 -91930366 + MIR SINE MIR 6 148 -60 375 41 0 0 chr6 97350092 97350141 -91929413 + (TG)n Simple_repeat Simple_repeat 2 50 0 376 245 21 0 chr6 97350763 97350857 -91928697 - MER5C DNA MER1_type -200 124 29 196 125 31 0 chr6 97350857 97350889 -91928665 + MIR3 SINE MIR 157 189 -19 673 273 29 0 chr6 97351021 97351193 -91928361 + MLT1J LTR MaLR 7 183 -328 235 242 110 44 chr6 97351208 97351299 -91928255 - MER41E LTR ERV1 -59 453 357 * 1254 242 27 0 chr6 97351271 97351564 -91927990 - LTR43 LTR ERV1 -124 478 178 666 191 133 52 chr6 97352905 97353078 -91926476 - MER5A DNA MER1_type -2 187 1 276 314 8 16 chr6 97353219 97353340 -91926214 + MIR SINE MIR 79 198 -64 25 0 0 0 chr6 97353963 97353988 -91925566 + AT_rich Low_complexity Low_complexity 1 25 0 2302 59 0 17 chr6 97354043 97354358 -91925196 - AluY SINE Alu 0 310 1 357 311 23 8 chr6 97354580 97354712 -91924842 - MIR SINE MIR -57 205 72 3249 107 26 5 chr6 97354855 97355332 -91924222 - L1PB1 LINE L1 -416 5735 5250 3191 102 2 9 chr6 97355332 97355771 -91923783 + L1PB1 LINE L1 5714 6149 -2 3249 107 26 5 chr6 97355771 97355809 -91923745 - L1MB8 LINE L1 -901 5250 5214 * 4902 173 20 19 chr6 97355788 97356739 -91922815 + L1MB8 LINE L1 5227 6177 -1 831 173 19 65 chr6 97356934 97357148 -91922406 - HAL1 LINE L1 -197 2310 2107 2009 252 86 56 chr6 97357168 97358122 -91921432 - HAL1 LINE L1 -541 1966 984 296 289 59 53 chr6 97358258 97358410 -91921144 - HAL1 LINE L1 -1503 1004 852 512 180 50 10 chr6 97358888 97358988 -91920566 - MER5A DNA MER1_type -77 112 9 265 388 11 11 chr6 97359292 97359470 -91920084 + ERVL LTR ERVL 362 539 -4457 474 316 73 89 chr6 97359624 97360241 -91919313 + ERVL LTR ERVL 728 1334 -3662 888 344 81 26 chr6 97360298 97361158 -91918396 + ERVL LTR ERVL 1530 2509 -3255 414 0 0 0 chr6 97361158 97361204 -91918350 + (TG)n Simple_repeat Simple_repeat 2 47 0 888 344 81 26 chr6 97361204 97361362 -91918192 + ERVL LTR ERVL 2509 2657 -3107 2880 7 0 0 chr6 97361371 97361680 -91917874 - AluYa5 SINE Alu -2 309 1 320 312 50 7 chr6 97361680 97361811 -91917743 + LTR16B LTR ERVL 296 435 -29 340 328 106 38 chr6 97361896 97362292 -91917262 + ERVL LTR ERVL 4858 5280 -484 196 393 36 0 chr6 97362446 97362530 -91917024 + L2 LINE L2 3185 3271 -1 2005 110 52 46 chr6 97363469 97363796 -91915758 + THE1B LTR MaLR 1 329 -35 300 231 77 0 chr6 97364174 97364252 -91915302 - MIR SINE MIR -61 201 118 230 318 0 55 chr6 97364719 97364829 -91914725 - MIR SINE MIR -128 134 31 22 0 0 0 chr6 97365722 97365744 -91913810 + AT_rich Low_complexity Low_complexity 1 22 0 396 307 40 117 chr6 97365744 97366119 -91913435 - L2 LINE L2 0 3272 2927 186 43 0 0 chr6 97366254 97366277 -91913277 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2345 310 72 13 chr6 97366469 97367779 -91911775 - HERV16 LTR ERVL -2605 2391 934 334 247 126 65 chr6 97367796 97368043 -91911511 - LTR41 LTR ERVL -7 766 505 586 327 57 28 chr6 97368391 97368743 -91910811 - HERV16 LTR ERVL -4404 592 231 227 272 25 0 chr6 97368757 97368838 -91910716 - L1M4 LINE L1 -1565 4581 4499 1847 182 0 0 chr6 97368966 97369268 -91910286 - AluJb SINE Alu -10 302 1 375 324 29 14 chr6 97369364 97369503 -91910051 + MIR SINE MIR 112 252 -10 229 313 0 0 chr6 97369718 97369782 -91909772 - L2 LINE L2 -64 3249 3186 939 276 39 9 chr6 97370055 97370492 -91909062 + LTR33 LTR ERVL 1 507 -14 504 252 0 0 chr6 97370542 97370653 -91908901 + MIR SINE MIR 152 262 0 282 29 0 0 chr6 97371468 97371503 -91908051 + (TG)n Simple_repeat Simple_repeat 2 36 0 1671 247 51 13 chr6 97371586 97372036 -91907518 - MLT1C LTR MaLR 0 467 1 396 97 0 0 chr6 97373129 97373191 -91906363 + (TG)n Simple_repeat Simple_repeat 1 62 0 861 130 0 0 chr6 97373963 97374094 -91905460 - L1PA8 LINE L1 -9 6163 6033 229 316 174 10 chr6 97374846 97374944 -91904610 - MIR SINE MIR -79 129 16 21 89 0 0 chr6 97375258 97375314 -91904240 + AT_rich Low_complexity Low_complexity 1 56 0 378 309 66 7 chr6 97378913 97379065 -91900489 + MIR SINE MIR 31 191 -71 428 141 0 0 chr6 97379519 97379590 -91899964 - MER57A LTR ERV1 0 403 333 * 741 151 52 87 chr6 97379573 97379745 -91899809 - MER57A LTR ERV1 -237 166 1 205 306 28 0 chr6 97379787 97379859 -91899695 - MIR SINE MIR -102 160 87 895 295 72 28 chr6 97380141 97380531 -91899023 + MLT1J2 LTR MaLR 41 447 -3 1243 87 40 0 chr6 97381404 97381577 -91897977 + THE1C LTR MaLR 196 375 0 24 0 0 0 chr6 97382046 97382070 -91897484 + AT_rich Low_complexity Low_complexity 1 24 0 180 289 118 0 chr6 97382119 97382195 -91897359 - L2 LINE L2 -8 3305 3221 351 326 126 6 chr6 97382203 97382378 -91897176 - MIR SINE MIR -3 259 64 306 233 0 0 chr6 97383088 97383148 -91896406 - MIR SINE MIR -115 147 88 215 279 15 0 chr6 97384381 97384449 -91895105 + MIR3 SINE MIR 135 203 -5 31041 99 11 8 chr6 97384732 97390138 -91889416 - L1PA7 LINE L1 -11 6143 726 3092 84 18 11 chr6 97390449 97390888 -91888666 + MLT2A1 LTR ERVL 3 444 0 25 31 0 0 chr6 97391214 97391246 -91888308 + AT_rich Low_complexity Low_complexity 1 32 0 271 148 16 16 chr6 97491799 97491860 -91787694 + CT-rich Low_complexity Low_complexity 4 64 0 1252 181 34 21 chr6 97493910 97494119 -91785435 - MLT1B LTR MaLR 0 390 176 2390 94 0 0 chr6 97494119 97494416 -91785138 - AluSg SINE Alu -13 297 1 1252 181 34 21 chr6 97494416 97494443 -91785111 - MLT1B LTR MaLR -214 176 151 1190 149 5 34 chr6 97494590 97494798 -91784756 - MLT1B LTR MaLR -188 202 1 285 301 65 24 chr6 97494798 97494921 -91784633 - MIR SINE MIR -104 158 31 188 216 0 0 chr6 97494998 97495035 -91784519 + L2 LINE L2 3269 3305 -8 2019 112 13 3 chr6 97496736 97497040 -91782514 - AluSx SINE Alu -1 311 5 488 331 49 0 chr6 97497949 97498133 -91781421 - MIR SINE MIR 0 262 70 187 289 67 67 chr6 97499055 97499159 -91780395 + MIR SINE MIR 13 116 -146 2027 196 22 8 chr6 97501412 97501770 -91777784 + MLT1A1 LTR MaLR 1 363 -2 5360 140 89 103 chr6 97502500 97503110 -91776444 - L1MD2 LINE L1 0 7768 7151 249 235 59 24 chr6 97503110 97503195 -91776359 - MLT1B LTR MaLR -445 122 35 5360 140 89 103 chr6 97503195 97503663 -91775891 - L1MD2 LINE L1 -617 7151 6353 2197 131 35 35 chr6 97503663 97504038 -91775516 + THE1C LTR MaLR 1 375 0 5360 140 89 103 chr6 97504038 97504148 -91775406 - L1MD2 LINE L1 -1415 6353 6243 2313 104 0 0 chr6 97504805 97505104 -91774450 + AluSc SINE Alu 5 303 -6 1473 179 33 27 chr6 97505551 97505852 -91773702 + MSTB LTR MaLR 1 303 -123 193 36 0 36 chr6 97505961 97505989 -91773565 + (TAAAA)n Simple_repeat Simple_repeat 1 27 0 1407 264 90 37 chr6 97507374 97508008 -91771546 - L2 LINE L2 0 3313 2646 2088 145 96 6 chr6 97508428 97508591 -91770963 - THE1C LTR MaLR 0 375 228 348 43 0 0 chr6 97508591 97508637 -91770917 + (GA)n Simple_repeat Simple_repeat 1 46 0 2088 145 96 6 chr6 97508637 97508817 -91770737 - THE1C LTR MaLR -147 228 1 10517 141 29 7 chr6 97508817 97510361 -91769193 - THE1C-int LTR MaLR 0 1580 3 2059 172 62 6 chr6 97510363 97510718 -91768836 - THE1C LTR MaLR 0 375 1 191 291 29 39 chr6 97511912 97512015 -91767539 - MER5B DNA MER1_type -76 102 1 2710 41 0 3 chr6 97514190 97514507 -91765047 - AluYb8 SINE Alu -2 316 1 513 135 115 29 chr6 97514507 97514611 -91764943 + MSTB1 LTR MaLR 320 432 0 266 343 46 0 chr6 97514619 97514727 -91764827 - L2 LINE L2 -33 3239 3127 623 306 43 21 chr6 97514855 97515090 -91764464 - MIR SINE MIR 0 262 23 967 242 38 0 chr6 97515934 97516145 -91763409 - MER58A DNA MER1_type -5 219 1 376 303 64 0 chr6 97516175 97516284 -91763270 + L2 LINE L2 3141 3256 -16 210 328 38 53 chr6 97517441 97517572 -91761982 - L2 LINE L2 -1 3271 3143 1370 266 103 63 chr6 97517573 97518145 -91761409 - MLT1G LTR MaLR 0 590 1 290 237 79 27 chr6 97518190 97518365 -91761189 - MLT1H LTR MaLR 0 595 332 403 208 256 19 chr6 97518437 97518614 -91760940 - MLT1H LTR MaLR -355 194 1 204 300 164 0 chr6 97518746 97518856 -91760698 - L2 LINE L2 -235 3037 2910 193 303 101 11 chr6 97519825 97519914 -91759640 + L3b LINE CR1 1449 1545 -38 29 0 0 0 chr6 97520718 97520747 -91758807 + AT_rich Low_complexity Low_complexity 1 29 0 9726 79 2 12 chr6 97520765 97521967 -91757587 - L1PA7 LINE L1 -2 6152 4970 2319 85 0 7 chr6 97521967 97522272 -91757282 + AluY SINE Alu 1 303 -8 9726 79 2 12 chr6 97522272 97523097 -91756457 - L1PA7 LINE L1 -1184 4970 4138 847 127 0 8 chr6 97523101 97523227 -91756327 + THE1B LTR MaLR 240 364 0 458 150 25 0 chr6 97524607 97524687 -91754867 + MSTD LTR MaLR 313 394 -2 1500 244 67 55 chr6 97524729 97525253 -91754301 - MLT1H LTR MaLR -14 535 6 1785 146 0 55 chr6 97525435 97525743 -91753811 + AluJo SINE Alu 1 291 -21 200 290 0 16 chr6 97526049 97526111 -91753443 - L3 LINE CR1 -1 1576 1516 221 267 112 30 chr6 97526279 97526379 -91753175 + MIR SINE MIR 55 157 -62 1342 325 97 21 chr6 97526772 97527420 -91752134 - L2 LINE L2 -277 3036 2337 1554 246 83 33 chr6 97527424 97527988 -91751566 + MLT1G LTR MaLR 1 572 -18 367 274 250 14 chr6 97528002 97528210 -91751344 - L2 LINE L2 -977 2337 2081 2242 114 0 3 chr6 97528307 97528604 -91750950 - AluSg SINE Alu -14 296 1 1009 225 190 43 chr6 97529477 97529940 -91749614 + LTR10B LTR ERV1 15 545 -2 2867 231 36 71 chr6 97529983 97530996 -91748558 + HERVI LTR ERV1 26 1003 -6782 607 247 47 0 chr6 97531696 97531866 -91747688 + LTR10B-int LTR ERV1 2990 3167 -3482 1618 241 45 12 chr6 97531867 97532270 -91747284 + LTR10B-int LTR ERV1 4224 4639 -3146 529 225 26 33 chr6 97532292 97532443 -91747111 + LTR10B-int LTR ERV1 4778 4927 -2858 1565 218 141 18 chr6 97532511 97532957 -91746597 + LTR10B-int LTR ERV1 2659 3159 -3737 5598 238 8 9 chr6 97533312 97534686 -91744868 + LTR10B-int LTR ERV1 6412 7783 -2 1241 217 139 39 chr6 97534714 97535197 -91744357 + LTR10B LTR ERV1 15 545 -2 558 260 7 0 chr6 97535283 97535447 -91744107 - L1MA10 LINE L1 -1 6333 6010 3087 201 31 18 chr6 97535519 97536261 -91743293 + Charlie1 DNA MER1_type 1519 2270 -491 1921 139 6 64 chr6 97536267 97536403 -91743151 + AluSx SINE Alu 2 144 -168 2163 117 3 3 chr6 97536403 97536703 -91742851 + AluSc SINE Alu 1 300 -9 1921 139 6 64 chr6 97536703 97536896 -91742658 + AluSx SINE Alu 144 312 0 304 136 15 15 chr6 97536908 97536974 -91742580 + A-rich Low_complexity Low_complexity 3 68 0 995 183 12 33 chr6 97536974 97537215 -91742339 + Charlie1 DNA MER1_type 2264 2499 -262 252 200 31 0 chr6 97537217 97537282 -91742272 + Charlie1 DNA MER1_type 2695 2761 0 343 194 108 21 chr6 97537320 97537413 -91742141 - MIR SINE MIR -71 191 91 2629 113 6 0 chr6 97538373 97538735 -91740819 - THE1B LTR MaLR 0 364 1 9047 99 40 77 chr6 97538735 97539999 -91739555 - THE1B-int LTR MaLR 0 1580 391 8222 30 3 4 chr6 97539999 97541749 -91737805 + L1PA4 LINE L1 4407 6155 0 9047 99 40 77 chr6 97541749 97542126 -91737428 - THE1B-int LTR MaLR -1189 391 1 2717 104 3 3 chr6 97542126 97542490 -91737064 - THE1B LTR MaLR 0 364 1 332 205 39 39 chr6 97544866 97544944 -91734610 + MIR3 SINE MIR 109 186 -22 1988 137 0 44 chr6 97545044 97545365 -91734189 + AluSx SINE Alu 6 312 0 1476 217 131 0 chr6 97545600 97545950 -91733604 + MSTD LTR MaLR 1 396 0 29 28 0 0 chr6 97546037 97546073 -91733481 + AT_rich Low_complexity Low_complexity 1 36 0 349 314 76 15 chr6 97546115 97546504 -91733050 - L1ME LINE L1 -340 5822 5394 524 200 42 8 chr6 97546529 97546649 -91732905 + MLT1J2 LTR MaLR 20 143 -307 2387 101 0 0 chr6 97547350 97547658 -91731896 - AluY SINE Alu -2 309 2 736 128 24 0 chr6 97547845 97547970 -91731584 - L1PA8 LINE L1 -143 6029 5902 900 80 0 16 chr6 97547970 97548085 -91731469 + L1PA8 LINE L1 6042 6164 -8 11584 217 13 7 chr6 97548166 97551355 -91728199 + L1 LINE L1 1655 4855 -1291 569 219 40 13 chr6 97551404 97551555 -91727999 + HsTC2 DNA Tc2 160 314 -1584 343 199 140 15 chr6 97551561 97551697 -91727857 + HsTC2 DNA Tc2 1707 1859 -39 195 125 0 0 chr6 97552702 97552742 -91726812 + (T)n Simple_repeat Simple_repeat 1 40 0 2620 43 0 0 chr6 97552742 97553068 -91726486 - LTR17 LTR ERV1 -454 326 1 2207 75 0 0 chr6 97553068 97553360 -91726194 - HERV17 LTR ERV1 0 8626 8335 285 51 0 0 chr6 97553350 97553389 -91726165 - HERV17 LTR ERV1 -1078 7548 7510 * 3739 31 0 0 chr6 97553382 97553835 -91725719 - HERV17 LTR ERV1 -2607 6019 5567 797 236 44 13 chr6 97554001 97554226 -91725328 + HsTC2 DNA Tc2 83 314 -1584 428 153 73 40 chr6 97554232 97554382 -91725172 + HsTC2 DNA Tc2 1712 1866 -32 1057 116 26 0 chr6 97555268 97555457 -91724097 - L1MA5A LINE L1 0 6297 6104 2476 132 25 20 chr6 97555480 97555920 -91723634 - Tigger1 DNA MER2_type -180 2238 1797 32716 101 15 25 chr6 97555920 97562120 -91717434 - L1PA6 LINE L1 -8 6146 11 4993 163 5 2 chr6 97562132 97563736 -91715818 - L1MA5A LINE L1 -184 6113 4506 200 277 0 0 chr6 97564188 97564235 -91715319 + (CATA)n Simple_repeat Simple_repeat 4 50 0 396 88 0 0 chr6 97564238 97564295 -91715259 + (CA)n Simple_repeat Simple_repeat 2 58 0 786 171 0 0 chr6 97564302 97564419 -91715135 - FLAM_C SINE Alu -15 118 2 25 0 0 0 chr6 97565016 97565041 -91714513 + AT_rich Low_complexity Low_complexity 1 25 0 189 279 123 41 chr6 97565267 97565389 -91714165 + L3 LINE CR1 645 776 -801 555 237 23 74 chr6 97565659 97565841 -91713713 + MIR SINE MIR 14 193 -15 218 354 21 49 chr6 97566200 97566344 -91713210 + L3b LINE CR1 1290 1429 -154 1926 177 3 0 chr6 97566429 97566734 -91712820 + AluJb SINE Alu 3 308 -4 21 36 0 0 chr6 97566878 97566906 -91712648 + AT_rich Low_complexity Low_complexity 1 28 0 1219 204 40 82 chr6 97568176 97568577 -91710977 + MLT1B LTR MaLR 1 384 -6 738 249 81 5 chr6 97568583 97568780 -91710774 + MIR SINE MIR 36 247 -15 375 89 89 6 chr6 97569071 97569229 -91710325 + (TA)n Simple_repeat Simple_repeat 2 172 0 275 182 50 0 chr6 97569274 97569373 -91710181 + (TA)n Simple_repeat Simple_repeat 1 104 0 197 307 90 38 chr6 97569800 97570012 -91709542 - L2 LINE L2 -745 2569 2347 237 33 0 0 chr6 97572362 97572392 -91707162 + (CA)n Simple_repeat Simple_repeat 2 31 0 271 333 105 9 chr6 97572927 97573041 -91706513 + MIR3 SINE MIR 54 178 -30 1721 175 34 0 chr6 97573344 97573636 -91705918 + AluJb SINE Alu 1 302 -10 930 211 0 56 chr6 97574123 97574336 -91705218 - AluJb SINE Alu -12 300 100 344 264 101 38 chr6 97575575 97575734 -91703820 + MIR SINE MIR 84 252 -10 214 292 67 34 chr6 97576316 97576405 -91703149 - MER5A DNA MER1_type -55 134 43 344 294 85 5 chr6 97576634 97576845 -91702709 + L1ME LINE L1 5412 5648 -473 29 0 0 0 chr6 97577047 97577076 -91702478 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 97577141 97577164 -91702390 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr6 97577555 97577591 -91701963 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 97578060 97578082 -91701472 + AT_rich Low_complexity Low_complexity 1 22 0 378 312 165 14 chr6 97578253 97578471 -91701083 + MIR SINE MIR 12 262 0 239 270 157 0 chr6 97578538 97578627 -91700927 + MIR SINE MIR 90 192 -70 1781 119 28 7 chr6 97578699 97578984 -91700570 + MER47A DNA MER2_type 1 291 -75 584 338 78 40 chr6 97578988 97579511 -91700043 + L2 LINE L2 2221 2763 -551 188 340 57 38 chr6 97579826 97579932 -91699622 + L2 LINE L2 3150 3257 -56 1363 179 0 5 chr6 97580097 97580320 -91699234 - MER58A DNA MER1_type 0 224 3 628 253 19 19 chr6 97581647 97581809 -91697745 + MIR SINE MIR 81 242 -20 183 80 0 0 chr6 97581820 97581845 -91697709 + (TTA)n Simple_repeat Simple_repeat 2 26 0 447 326 65 82 chr6 97581919 97582259 -91697295 + L2 LINE L2 2934 3267 -5 1038 239 63 108 chr6 97582435 97582961 -91696593 - L2 LINE L2 -4 3309 2808 1092 266 92 32 chr6 97583550 97583919 -91695635 - L2 LINE L2 -7 3306 2916 2014 113 68 37 chr6 97584298 97584651 -91694903 + THE1B LTR MaLR 1 364 0 180 0 0 0 chr6 97585121 97585141 -91694413 + (CA)n Simple_repeat Simple_repeat 2 21 0 288 303 0 20 chr6 97585236 97585335 -91694219 + (CATATA)n Simple_repeat Simple_repeat 1 97 0 27 49 0 0 chr6 97585349 97585390 -91694164 + AT_rich Low_complexity Low_complexity 1 41 0 29 47 0 0 chr6 97585676 97585719 -91693835 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 97586776 97586797 -91692757 + AT_rich Low_complexity Low_complexity 1 21 0 1074 241 22 12 chr6 97588792 97589111 -91690443 - L1ME2 LINE L1 -1 6163 5842 234 0 0 0 chr6 97589206 97589232 -91690322 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 22 70 0 0 chr6 97589232 97589275 -91690279 + AT_rich Low_complexity Low_complexity 1 43 0 195 210 226 0 chr6 97590340 97590402 -91689152 + L2 LINE L2 3223 3298 -15 492 307 62 19 chr6 97590553 97590810 -91688744 + L2 LINE L2 2600 2867 -447 320 331 109 58 chr6 97591580 97592178 -91687376 + L2 LINE L2 2054 2681 -633 348 302 94 19 chr6 97592221 97592380 -91687174 + MER5B DNA MER1_type 3 173 -5 1976 136 11 111 chr6 97592610 97592714 -91686840 + MLT1B LTR MaLR 1 114 -276 1774 159 7 27 chr6 97592714 97593041 -91686513 + AluSx SINE Alu 1 321 0 1976 136 11 111 chr6 97593041 97593366 -91686188 + MLT1B LTR MaLR 114 390 0 298 319 26 26 chr6 97593984 97594100 -91685454 + L2 LINE L2 3188 3303 -10 2767 92 22 96 chr6 97594337 97594826 -91684728 + MLT2A2 LTR ERVL 1 453 0 569 277 39 7 chr6 97594826 97594981 -91684573 - MLT1I LTR MaLR -157 252 93 2852 261 45 12 chr6 97595136 97595941 -91683613 + L1ME1 LINE L1 38 868 -5528 * 6452 228 77 25 chr6 97595931 97598205 -91681349 + L1ME1 LINE L1 3104 5548 -687 2158 67 4 0 chr6 97598205 97598475 -91681079 - AluY SINE Alu -16 295 25 6452 228 77 25 chr6 97598475 97599152 -91680402 + L1ME1 LINE L1 5548 6189 -46 451 265 121 0 chr6 97599057 97599189 -91680365 + L1MA10 LINE L1 6254 6401 -2 * 232 297 14 27 chr6 97599836 97599910 -91679644 - L3b LINE CR1 -153 1430 1358 212 259 82 68 chr6 97600412 97600559 -91678995 + MIR SINE MIR 99 247 -15 198 326 149 14 chr6 97600818 97600959 -91678595 - L3 LINE CR1 -1114 463 304 496 171 70 8 chr6 97601040 97601169 -91678385 - L1ME4a LINE L1 -3 6118 5982 555 343 96 0 chr6 97602392 97602611 -91676943 + MIR SINE MIR 14 253 -9 219 208 39 26 chr6 97603138 97603215 -91676339 + CT-rich Low_complexity Low_complexity 3 80 0 2301 37 0 0 chr6 97607032 97607305 -91672249 - L1PA3 LINE L1 -3 6152 5880 29 0 0 0 chr6 97609259 97609288 -91670266 + AT_rich Low_complexity Low_complexity 1 29 0 34 0 0 0 chr6 97609918 97609952 -91669602 + AT_rich Low_complexity Low_complexity 1 34 0 286 331 74 46 chr6 97610190 97610365 -91669189 - MIR3 SINE MIR -12 196 17 22 56 0 0 chr6 97611696 97611732 -91667822 + AT_rich Low_complexity Low_complexity 1 36 0 267 238 30 69 chr6 97612110 97612211 -91667343 - L1ME4a LINE L1 -69 6052 5956 519 320 68 8 chr6 97612327 97612692 -91666862 - L1ME4a LINE L1 -357 5764 5378 21 0 0 0 chr6 97612891 97612912 -91666642 + AT_rich Low_complexity Low_complexity 1 21 0 220 309 49 41 chr6 97613184 97613307 -91666247 + L2 LINE L2 3184 3307 -6 571 231 148 18 chr6 97616125 97616354 -91663200 - Charlie2 DNA MER1_type -3 2859 2601 25 0 0 0 chr6 97616433 97616458 -91663096 + AT_rich Low_complexity Low_complexity 1 25 0 1457 264 102 18 chr6 97616533 97616619 -91662935 - Charlie2 DNA MER1_type -276 2586 2509 2717 17 0 0 chr6 97616619 97616919 -91662635 - AluY SINE Alu -11 300 1 1457 264 102 18 chr6 97616919 97617498 -91662056 - Charlie2 DNA MER1_type -353 2509 1865 778 298 105 7 chr6 97617520 97617805 -91661749 - Charlie2 DNA MER1_type -2463 319 7 7043 52 9 3 chr6 97617827 97618832 -91660722 + L1PA6 LINE L1 5145 6154 0 278 337 0 0 chr6 97620269 97620355 -91659199 + L2 LINE L2 3186 3271 -1 239 0 0 31 chr6 97620523 97620555 -91658999 + (TG)n Simple_repeat Simple_repeat 1 31 0 216 0 0 0 chr6 97620708 97620732 -91658822 + (CA)n Simple_repeat Simple_repeat 1 24 0 432 133 148 0 chr6 97621404 97621516 -91658038 + MLT1B-int LTR MaLR 1237 1735 0 2365 140 5 15 chr6 97621517 97621911 -91657643 + MLT1B LTR MaLR 1 390 0 467 191 163 14 chr6 97621986 97622127 -91657427 - MER69 DNA AcHobo -7 2519 2358 296 198 148 50 chr6 97622129 97622230 -91657324 - MER69 DNA AcHobo -1106 120 10 306 0 0 0 chr6 97623047 97623081 -91656473 + (TG)n Simple_repeat Simple_repeat 2 35 0 483 225 152 36 chr6 97623380 97623518 -91656036 + MER5A DNA MER1_type 1 154 -35 278 322 44 11 chr6 97623751 97623841 -91655713 - MIR SINE MIR -168 94 2 508 307 90 16 chr6 97624032 97624243 -91655311 + MIR SINE MIR 38 262 0 456 19 0 0 chr6 97624323 97624376 -91655178 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 22 56 0 0 chr6 97626355 97626391 -91653163 + AT_rich Low_complexity Low_complexity 1 36 0 703 249 68 48 chr6 97626882 97627131 -91652423 - MIR SINE MIR -1 261 8 755 289 38 11 chr6 97627227 97627493 -91652061 + HAL1 LINE L1 36 308 -2199 2932 221 19 29 chr6 97627679 97628402 -91651152 + L1ME2 LINE L1 5440 6155 -9 619 336 33 0 chr6 97628480 97628700 -91650854 - MIR SINE MIR -30 232 8 250 275 33 22 chr6 97629114 97629205 -91650349 + MIR SINE MIR 109 200 -62 413 282 101 44 chr6 97629205 97629640 -91649914 + MLT1J LTR MaLR 1 501 -10 288 304 40 16 chr6 97630035 97630160 -91649394 - MIR SINE MIR -3 259 132 273 29 0 0 chr6 97630402 97630436 -91649118 + (TG)n Simple_repeat Simple_repeat 2 35 0 402 282 122 27 chr6 97631466 97631838 -91647716 + L1M4 LINE L1 3908 4319 -1827 515 304 169 31 chr6 97631873 97632353 -91647201 + L1M4 LINE L1 4377 4922 -1224 2893 130 2 51 chr6 97632388 97633339 -91646215 - L1PA4 LINE L1 -359 5941 5050 1761 52 0 4 chr6 97633339 97633570 -91645984 + L1PA4 LINE L1 5925 6154 -1 244 363 0 67 chr6 97635207 97635342 -91644212 + MIR SINE MIR 82 207 -55 975 196 13 44 chr6 97635709 97635934 -91643620 + MER20 DNA MER1_type 2 219 0 4971 136 32 64 chr6 97637948 97638960 -91640594 - L1MA8 LINE L1 -10 6281 5303 1249 73 0 0 chr6 97638962 97639113 -91640441 + AluY SINE Alu 149 299 -12 2236 180 7 22 chr6 97639114 97639570 -91639984 - L1MA8 LINE L1 -832 5314 4866 244 268 132 23 chr6 97639768 97639927 -91639627 - MIR SINE MIR -44 218 34 659 283 94 54 chr6 97639948 97640340 -91639214 + MLT1J2 LTR MaLR 30 437 -13 2937 132 54 6 chr6 97641896 97642042 -91637512 - L1MA9 LINE L1 -4 6308 6170 201 74 0 0 chr6 97642042 97642069 -91637485 + (TG)n Simple_repeat Simple_repeat 2 28 0 2937 132 54 6 chr6 97642069 97642444 -91637110 - L1MA9 LINE L1 -142 6170 5762 227 339 81 0 chr6 97645077 97645201 -91634353 - MLT1I LTR MaLR -250 159 26 2337 178 35 63 chr6 97645345 97646010 -91633544 - MLT1E3 LTR MaLR -2 622 1 388 259 36 104 chr6 97646016 97646209 -91633345 + MIR SINE MIR 33 212 -50 2376 55 27 0 chr6 97646360 97646653 -91632901 - AluY SINE Alu -10 301 1 411 324 32 16 chr6 97647513 97647698 -91631856 + L3b LINE CR1 1274 1461 -122 27 49 0 0 chr6 97647785 97647826 -91631728 + AT_rich Low_complexity Low_complexity 1 41 0 27 49 0 0 chr6 97648255 97648296 -91631258 + AT_rich Low_complexity Low_complexity 1 41 0 348 256 128 0 chr6 97649601 97649718 -91629836 - MIR SINE MIR -21 241 110 2327 87 0 13 chr6 97651058 97651357 -91628197 - AluSx SINE Alu -17 295 1 1434 279 77 28 chr6 97652283 97652308 -91627246 + L2 LINE L2 2622 2644 -669 1895 232 102 18 chr6 97652308 97652855 -91626699 + MLT1E LTR MaLR 1 593 0 1434 279 77 28 chr6 97652855 97653489 -91626065 + L2 LINE L2 2644 3309 -4 700 276 65 24 chr6 97654156 97654402 -91625152 + MIR SINE MIR 7 262 0 27111 100 5 6 chr6 97655567 97658040 -91621514 + L1PA7 LINE L1 1314 3778 -2376 2252 92 7 16 chr6 97658040 97658346 -91621208 + AluY SINE Alu 1 303 -8 27111 100 5 6 chr6 97658346 97660720 -91618834 + L1PA7 LINE L1 3778 6154 0 434 50 67 0 chr6 97660727 97660787 -91618767 - MADE1 DNA Mariner -13 67 4 644 306 0 41 chr6 97660816 97661058 -91618496 + MIR SINE MIR 31 262 0 415 309 92 46 chr6 97662189 97662558 -91616996 - LTR33 LTR ERVL -65 456 71 210 71 0 0 chr6 97662564 97662592 -91616962 + (CAGGG)n Simple_repeat Simple_repeat 1 28 0 595 338 5 14 chr6 97662627 97662837 -91616717 - MIR SINE MIR -21 241 34 1918 130 76 20 chr6 97662877 97663232 -91616322 - THE1C LTR MaLR 0 375 1 975 235 14 9 chr6 97663250 97663471 -91616083 + MER58A DNA MER1_type 2 223 -1 24 91 0 0 chr6 97663657 97663723 -91615831 + AT_rich Low_complexity Low_complexity 1 66 0 31 0 0 0 chr6 97663921 97663952 -91615602 + AT_rich Low_complexity Low_complexity 1 31 0 1045 295 83 23 chr6 97663964 97664398 -91615156 - L2 LINE L2 -14 3299 2840 1629 211 11 31 chr6 97664422 97664813 -91614741 + L1ME2 LINE L1 5789 6332 -2 757 300 24 12 chr6 97664866 97665119 -91614435 - L2 LINE L2 -493 2821 2566 253 289 56 72 chr6 97665171 97665351 -91614203 - L1ME LINE L1 -383 5738 5562 43472 44 2 0 chr6 97665490 97671623 -91607931 + L1PA4 LINE L1 13 6154 -1 2742 109 5 2 chr6 97671784 97672188 -91607366 + L1PA13 LINE L1 5753 6157 -6 21 0 0 0 chr6 97672837 97672858 -91606696 + AT_rich Low_complexity Low_complexity 1 21 0 189 373 0 0 chr6 97673294 97673353 -91606201 + L2 LINE L2 3204 3262 -10 25 31 0 0 chr6 97673935 97673967 -91605587 + AT_rich Low_complexity Low_complexity 1 32 0 3092 84 18 11 chr6 97674293 97674732 -91604822 - MLT2A1 LTR ERVL 0 444 3 2932 104 43 0 chr6 97675043 97675484 -91604070 + L1P3 LINE L1 1012 1471 -4990 23 0 0 0 chr6 97675814 97675837 -91603717 + AT_rich Low_complexity Low_complexity 1 23 0 1059 215 135 25 chr6 97676401 97676726 -91602828 - MLT1A1 LTR MaLR 0 365 5 342 0 0 0 chr6 97676735 97676773 -91602781 + (T)n Simple_repeat Simple_repeat 1 38 0 327 316 110 7 chr6 97679484 97679620 -91599934 - MIR SINE MIR -81 181 32 181 348 33 22 chr6 97680507 97680599 -91598955 - MIR SINE MIR -96 112 20 334 250 156 67 chr6 97681829 97682009 -91597545 - L2 LINE L2 0 3313 3118 438 266 92 23 chr6 97682037 97682210 -91597344 + MIR SINE MIR 78 262 0 249 377 52 7 chr6 97682246 97682400 -91597154 - L2 LINE L2 -214 3058 2898 316 361 99 25 chr6 97682643 97683045 -91596509 - L2 LINE L2 0 3272 2841 6663 73 4 3 chr6 97683176 97687728 -91591826 + L1PA6 LINE L1 1414 6141 -13 17519 186 17 34 chr6 97688870 97691120 -91588434 + L1PA11 LINE L1 902 3188 -4396 336 24 0 0 chr6 97691120 97691161 -91588393 + (TC)n Simple_repeat Simple_repeat 2 42 0 17519 186 17 34 chr6 97691161 97692004 -91587550 + L1PA11 LINE L1 3188 4044 -3540 2188 104 0 0 chr6 97692004 97692282 -91587272 + AluSg SINE Alu 1 278 -32 203 0 0 36 chr6 97692282 97692310 -91587244 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 17519 186 17 34 chr6 97692310 97692406 -91587148 + L1PA11 LINE L1 4043 4139 -3445 1758 136 4 18 chr6 97692406 97692685 -91586869 + AluSx SINE Alu 33 307 -5 17519 186 17 34 chr6 97692685 97693951 -91585603 + L1PA11 LINE L1 4139 6046 -1538 6154 88 11 41 chr6 97693955 97695359 -91584195 + L1PA11 LINE L1 6236 7611 -1 3364 5 0 0 chr6 97695383 97695785 -91583769 + L1PA2 LINE L1 5767 6168 0 41 58 0 0 chr6 97695787 97695856 -91583698 + AT_rich Low_complexity Low_complexity 1 69 0 614 260 54 103 chr6 97695926 97696071 -91583483 - MIR SINE MIR -30 232 102 2330 83 10 3 chr6 97696071 97696371 -91583183 + AluSq SINE Alu 1 302 -11 614 260 54 103 chr6 97696371 97696467 -91583087 - MIR SINE MIR -160 102 3 231 107 0 54 chr6 97696919 97696975 -91582579 + (GAA)n Simple_repeat Simple_repeat 3 55 0 285 140 0 0 chr6 97697203 97697260 -91582294 + (TA)n Simple_repeat Simple_repeat 2 58 0 2219 121 16 0 chr6 97697558 97697865 -91581689 - AluSx SINE Alu 0 312 1 231 336 233 24 chr6 97698281 97698826 -91580728 - L2 LINE L2 -562 2752 2094 274 345 56 73 chr6 97699311 97699722 -91579832 - L2 LINE L2 -1428 1886 1483 282 222 0 28 chr6 97699886 97699958 -91579596 + MLT1K LTR MaLR 143 212 -376 294 349 41 12 chr6 97700064 97700233 -91579321 + MLT1K LTR MaLR 345 518 -70 396 269 13 27 chr6 97700988 97701100 -91578454 - MIR SINE MIR -80 128 4 1180 113 0 5 chr6 97701369 97701554 -91578000 + MER61A LTR ERV1 1 184 -159 892 298 72 48 chr6 97701678 97702094 -91577460 - MLT1J LTR MaLR -85 426 1 1029 283 56 6 chr6 97702339 97702696 -91576858 + LTR16B LTR ERVL 90 464 0 199 296 193 0 chr6 97703033 97703121 -91576433 - L2 LINE L2 -1 3312 3208 212 239 0 0 chr6 97704971 97705017 -91574537 + L2 LINE L2 3264 3309 -4 181 305 35 75 chr6 97705056 97705230 -91574324 + L2 LINE L2 1807 1973 -1341 248 216 0 20 chr6 97705363 97705414 -91574140 - L2 LINE L2 -6 3307 3258 211 236 14 28 chr6 97708796 97708868 -91570686 + GA-rich Low_complexity Low_complexity 5 75 0 2730 121 24 7 chr6 97710377 97710798 -91568756 + MSTA LTR MaLR 1 428 0 462 282 58 33 chr6 97710898 97711139 -91568415 + L1ME LINE L1 5545 5791 -330 1852 125 50 67 chr6 97711142 97711485 -91568069 - MER1B DNA MER1_type 0 337 1 534 281 146 14 chr6 97711547 97711917 -91567637 + MLT1L LTR MaLR 181 599 -16 24 91 0 0 chr6 97712030 97712096 -91567458 + AT_rich Low_complexity Low_complexity 1 66 0 840 284 66 42 chr6 97712308 97712643 -91566911 - MLT1I LTR MaLR -66 343 1 2376 120 13 13 chr6 97713527 97713902 -91565652 - THE1C LTR MaLR 0 375 1 255 79 0 0 chr6 97713920 97713958 -91565596 + (TC)n Simple_repeat Simple_repeat 2 39 0 305 159 16 0 chr6 97713959 97714022 -91565532 + (TA)n Simple_repeat Simple_repeat 1 64 0 291 289 23 46 chr6 97714137 97714310 -91565244 - MLT1K LTR MaLR -100 488 320 796 71 0 0 chr6 97714634 97714746 -91564808 - L1PA11 LINE L1 -393 5775 5664 2769 95 10 5 chr6 97714747 97715138 -91564416 + L1PA11 LINE L1 5777 6169 -5 193 345 179 12 chr6 97715294 97715462 -91564092 + MIR3 SINE MIR 10 205 -3 1275 38 0 0 chr6 97715718 97715910 -91563644 + L1PA4 LINE L1 5973 6164 0 225 0 0 0 chr6 97717644 97717669 -91561885 + (T)n Simple_repeat Simple_repeat 1 25 0 182 91 30 0 chr6 97719029 97719062 -91560492 + (TG)n Simple_repeat Simple_repeat 2 35 0 401 278 63 69 chr6 97719151 97719323 -91560231 + LTR16C LTR ERVL 149 320 -171 2416 214 42 11 chr6 97719323 97719873 -91559681 + MLT1F1 LTR MaLR 1 567 0 401 278 63 69 chr6 97719873 97720017 -91559537 + LTR16C LTR ERVL 320 463 -28 899 177 6 17 chr6 97720825 97721000 -91558554 - MLT1D LTR MaLR -332 173 1 243 103 0 0 chr6 97721617 97721656 -91557898 + (CA)n Simple_repeat Simple_repeat 1 39 0 2833 84 11 0 chr6 97722425 97722805 -91556749 + L1PA8A LINE L1 5730 6113 -18 349 243 309 13 chr6 97723101 97723253 -91556301 - MIR SINE MIR -46 216 20 25 0 0 0 chr6 97724952 97724977 -91554577 + AT_rich Low_complexity Low_complexity 1 25 0 471 177 0 0 chr6 97725225 97725321 -91554233 + A-rich Low_complexity Low_complexity 1 96 0 203 161 0 0 chr6 97725461 97725492 -91554062 + polypurine Low_complexity Low_complexity 2 32 0 2159 68 10 14 chr6 97726332 97726624 -91552930 + L1PB1 LINE L1 5858 6148 -3 305 232 17 32 chr6 97726868 97726962 -91552592 + MLT1J LTR MaLR 77 153 -256 4396 134 24 3 chr6 97727467 97728204 -91551350 + Tigger1 DNA MER2_type 1 753 -1665 1659 144 17 10 chr6 97728184 97728482 -91551072 + Tigger1 DNA MER2_type 2119 2418 0 * 220 189 0 0 chr6 97728730 97728767 -91550787 + MER91 DNA MER1_type 58 94 -102 249 33 0 0 chr6 97729105 97729135 -91550419 + (GA)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr6 97729883 97729906 -91549648 + AT_rich Low_complexity Low_complexity 1 23 0 300 336 134 28 chr6 97730268 97730655 -91548899 + L2 LINE L2 2845 3272 0 445 113 0 0 chr6 97731398 97731460 -91548094 + AluS SINE Alu 1 62 -249 1241 276 106 32 chr6 97732102 97732720 -91546834 - L2 LINE L2 -1 3312 2656 674 178 31 8 chr6 97732720 97732849 -91546705 - MLT1C LTR MaLR 0 467 336 1838 282 153 20 chr6 97733307 97734419 -91545135 - L2 LINE L2 -2 3311 2046 645 285 43 16 chr6 97734633 97734819 -91544735 + MIR3 SINE MIR 6 196 -12 477 222 0 0 chr6 97735254 97735344 -91544210 + L2 LINE L2 3183 3272 0 317 283 67 56 chr6 97735504 97735684 -91543870 + MIR3 SINE MIR 20 201 -7 556 168 59 0 chr6 97735852 97735953 -91543601 - AluSp/q SINE Alu -16 297 191 11535 61 0 0 chr6 97736055 97737614 -91541940 - L1P LINE L1 -3253 2893 1335 3383 86 2 2 chr6 97737619 97738095 -91541459 + L1PA7 LINE L1 9 484 -5662 6907 63 3 13 chr6 97738196 97738605 -91540949 + L1PA7 LINE L1 4553 4965 -1189 2303 85 0 7 chr6 97738605 97738910 -91540644 - AluY SINE Alu -8 303 1 6907 63 3 13 chr6 97738910 97740114 -91539440 + L1PA7 LINE L1 4965 6154 0 5595 184 21 0 chr6 97740391 97741426 -91538128 + L1M1 LINE L1 1061 2117 -5448 16483 60 0 4 chr6 97741583 97743813 -91535741 + L1M1 LINE L1 2092 4312 -3253 521 72 0 0 chr6 97743914 97743983 -91535571 - THE1B LTR MaLR -295 69 1 341 306 38 12 chr6 97743988 97744148 -91535406 + L1ME3A LINE L1 5777 5940 -230 1101 272 34 3 chr6 97746770 97747123 -91532431 + HAL1 LINE L1 2 365 -2142 1650 175 32 43 chr6 97747133 97747265 -91532289 + Tigger7 DNA MER2_type 1 133 -2354 1984 134 38 3 chr6 97747265 97747556 -91531998 + AluSx SINE Alu 1 301 -11 1650 175 32 43 chr6 97747556 97747771 -91531783 + Tigger7 DNA MER2_type 133 344 -2143 777 162 14 7 chr6 97747766 97747914 -91531640 + Tigger7 DNA MER2_type 2343 2491 0 * 1451 292 76 32 chr6 97747932 97748885 -91530669 + HAL1 LINE L1 404 1397 -1110 1255 255 88 34 chr6 97748903 97749311 -91530243 + LTR16A LTR ERVL 18 447 -3 1578 220 52 112 chr6 97749425 97749687 -91529867 + HAL1 LINE L1 1463 1739 -768 180 97 0 0 chr6 97749687 97749718 -91529836 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1578 220 52 112 chr6 97749718 97750079 -91529475 + HAL1 LINE L1 1739 2016 -491 2001 118 32 3 chr6 97750079 97750393 -91529161 + L1PB3 LINE L1 5825 6147 -7 1578 220 52 112 chr6 97750393 97750692 -91528862 + HAL1 LINE L1 2016 2331 -176 2488 60 0 7 chr6 97750716 97751015 -91528539 + AluY SINE Alu 1 297 -14 1050 171 19 48 chr6 97751431 97751667 -91527887 + AluJb SINE Alu 89 312 0 940 147 0 0 chr6 97752255 97752391 -91527163 + AluJb SINE Alu 1 136 -176 766 29 0 10 chr6 97752391 97752485 -91527069 - L1PA8A LINE L1 -319 5812 5718 922 101 0 22 chr6 97752485 97752623 -91526931 + L1PA8A LINE L1 5992 6126 -5 1230 169 0 0 chr6 97752638 97752827 -91526727 + AluJb SINE Alu 122 310 -2 311 123 35 0 chr6 97752827 97752884 -91526670 + GA-rich Low_complexity Low_complexity 1 59 0 850 188 0 22 chr6 97753028 97753328 -91526226 + MLT1A1 LTR MaLR 1 365 0 207 0 0 0 chr6 97753371 97753394 -91526160 + (TTAG)n Simple_repeat Simple_repeat 2 24 0 2560 124 42 0 chr6 97753401 97753811 -91525743 - L1PA16 LINE L1 -10 6156 5730 294 267 0 0 chr6 97753952 97754027 -91525527 - MIR SINE MIR -28 234 160 573 267 6 31 chr6 97754202 97754363 -91525191 - MIR SINE MIR -92 170 14 22 0 0 0 chr6 97754651 97754673 -91524881 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 97755620 97755640 -91523914 + (TAA)n Simple_repeat Simple_repeat 1 20 0 693 193 88 97 chr6 97755641 97755869 -91523685 - MIR SINE MIR -8 254 29 325 275 107 20 chr6 97757608 97757757 -91521797 + Charlie8 DNA MER1_type 85 246 -2171 648 239 105 71 chr6 97757818 97758056 -91521498 + MIR SINE MIR 17 262 0 267 31 0 0 chr6 97758065 97758097 -91521457 + (CAT)n Simple_repeat Simple_repeat 1 32 0 343 206 41 0 chr6 97758824 97758921 -91520633 + MER20B DNA MER1_type 36 136 -647 880 330 79 34 chr6 97759300 97759927 -91519627 - L2 LINE L2 -31 3282 2618 236 308 90 26 chr6 97759901 97759979 -91519575 + L3 LINE CR1 1483 1565 -12 * 18820 111 11 11 chr6 97760606 97763547 -91516007 + HERV9 LTR ERV1 5461 8399 0 647 183 158 32 chr6 97763547 97763793 -91515761 + LTR12 LTR ERV1 1 277 -437 319 214 41 20 chr6 97763793 97763891 -91515663 + LTR30 LTR ERV1 544 643 -79 597 163 0 0 chr6 97763892 97763990 -91515564 + LTR12 LTR ERV1 481 578 -136 915 163 26 5 chr6 97763990 97764180 -91515374 - L1 LINE L1 -1108 6457 6264 14217 164 51 19 chr6 97764199 97767952 -91511602 + L1PB1 LINE L1 107 4256 -2611 804 73 0 0 chr6 97767952 97768077 -91511477 + AluY SINE Alu 187 311 0 14217 164 51 19 chr6 97768077 97770769 -91508785 + L1PB1 LINE L1 4256 6860 -7 1181 67 17 6 chr6 97770914 97770937 -91508617 + (GAAA)n Simple_repeat Simple_repeat 1 22 -502 1878 126 7 0 chr6 97770937 97771206 -91508348 + AluSp SINE Alu 43 313 0 1181 67 17 6 chr6 97771206 97771255 -91508299 + (GAAA)n Simple_repeat Simple_repeat 22 524 0 1181 67 17 6 chr6 97771255 97771433 -91508121 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 11179 194 28 3 chr6 97771503 97774497 -91505057 - L1 LINE L1 -1286 6279 3212 28 48 0 0 chr6 97774504 97774546 -91505008 + AT_rich Low_complexity Low_complexity 1 42 0 384 358 116 0 chr6 97774598 97774788 -91504766 - MIR SINE MIR -49 213 2 183 80 0 0 chr6 97775333 97775358 -91504196 + (TA)n Simple_repeat Simple_repeat 2 26 0 256 224 0 53 chr6 97775716 97775792 -91503762 + MER112 DNA MER1_type 1 72 -188 408 71 0 0 chr6 97775827 97775883 -91503671 + (CA)n Simple_repeat Simple_repeat 1 56 0 180 299 78 13 chr6 97775954 97776031 -91503523 - MIR SINE MIR -147 115 34 392 257 20 10 chr6 97776592 97776693 -91502861 + MIR SINE MIR 22 123 -85 249 245 0 0 chr6 97777222 97777275 -91502279 + L2 LINE L2 3259 3311 -2 22 56 0 0 chr6 97780089 97780125 -91499429 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr6 97780161 97780192 -91499362 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 97780734 97780755 -91498799 + AT_rich Low_complexity Low_complexity 1 21 0 263 243 14 14 chr6 97780827 97780897 -91498657 + U4 snRNA snRNA 2 71 -74 372 43 0 0 chr6 97780940 97780986 -91498568 + (TA)n Simple_repeat Simple_repeat 1 46 0 216 0 0 0 chr6 97782614 97782638 -91496916 + (CGGGGG)n Simple_repeat Simple_repeat 3 26 0 339 269 164 54 chr6 97784144 97784311 -91495243 + MIR SINE MIR 71 254 -8 228 300 100 71 chr6 97784638 97784808 -91494746 + MER5A DNA MER1_type 9 183 -6 * 592 224 179 0 chr6 97784788 97784922 -91494632 + MER5B DNA MER1_type 21 178 0 262 291 10 0 chr6 97788520 97788623 -91490931 + MER112 DNA MER1_type 67 170 -90 818 206 5 86 chr6 97789153 97789361 -91490193 + MER20 DNA MER1_type 1 191 -28 981 203 119 21 chr6 97789361 97789723 -91489831 + MSTC LTR MaLR 1 424 -4 641 253 168 17 chr6 97790829 97791121 -91488433 - LTR33 LTR ERVL -142 379 44 441 0 0 0 chr6 97791130 97791179 -91488375 + (TG)n Simple_repeat Simple_repeat 2 50 0 394 280 213 9 chr6 97793436 97793647 -91485907 - MIR SINE MIR -3 259 6 21 0 0 0 chr6 97794030 97794051 -91485503 + AT_rich Low_complexity Low_complexity 1 21 0 472 298 95 12 chr6 97795263 97795431 -91484123 - MIR SINE MIR -80 182 1 254 229 16 0 chr6 97795863 97795924 -91483630 + (TA)n Simple_repeat Simple_repeat 1 62 0 2982 70 2 0 chr6 97795960 97796358 -91483196 + MLT2A1 LTR ERVL 1 399 -45 360 148 0 0 chr6 97796361 97796422 -91483132 + (TA)n Simple_repeat Simple_repeat 2 62 0 435 18 0 0 chr6 97796438 97796493 -91483061 + MLT2A1 LTR ERVL 390 444 0 231 88 0 0 chr6 97797661 97797695 -91481859 + (TG)n Simple_repeat Simple_repeat 2 35 0 380 276 129 6 chr6 97797735 97797905 -91481649 + MIR SINE MIR 7 197 -65 1871 84 111 0 chr6 97797919 97798180 -91481374 - AluSc SINE Alu -19 290 1 431 292 48 9 chr6 97799216 97799369 -91480185 - MIR SINE MIR -21 187 18 224 259 147 35 chr6 97799619 97799735 -91479819 + L2 LINE L2 3134 3262 -10 373 228 53 18 chr6 97800112 97800226 -91479328 + MER117 DNA MER1_type 15 132 -65 495 302 115 47 chr6 97801170 97801683 -91477871 - MLT1K LTR MaLR 0 588 41 2355 94 10 3 chr6 97802496 97802803 -91476751 + AluSx SINE Alu 1 309 -3 185 286 18 36 chr6 97803077 97803133 -91476421 + MIR SINE MIR 89 143 -119 193 260 134 55 chr6 97804962 97805089 -91474465 - L2 LINE L2 -3 3269 3133 343 312 71 43 chr6 97805816 97805957 -91473597 - L2 LINE L2 0 3313 3169 373 272 105 31 chr6 97806556 97806747 -91472807 + L2 LINE L2 2185 2389 -925 550 240 5 97 chr6 97807011 97807207 -91472347 - MER5B DNA MER1_type 0 178 1 196 369 81 13 chr6 97807287 97807523 -91472031 + L2 LINE L2 2488 2739 -575 447 274 72 123 chr6 97807556 97807888 -91471666 + L2 LINE L2 2952 3266 -6 3317 132 19 15 chr6 97808893 97809422 -91470132 + LTR26B LTR ERV1 1 531 0 304 189 7 41 chr6 97812754 97812850 -91466704 - L1M2 LINE L1 -721 5570 5476 * 1985 210 20 0 chr6 97812833 97813272 -91466282 - L1M2 LINE L1 -1088 5058 4611 23810 94 12 5 chr6 97813272 97817722 -91461832 - L1PA7 LINE L1 -4 6150 1668 3396 153 70 14 chr6 97817696 97817793 -91461761 - L1M2 LINE L1 -1524 4622 4532 * 5004 136 53 15 chr6 97817793 97818005 -91461549 + MER4D LTR ERV1 1 203 -700 2303 74 0 0 chr6 97818005 97818288 -91461266 - AluY SINE Alu -6 305 23 5004 136 53 15 chr6 97818288 97818945 -91460609 + MER4D LTR ERV1 203 903 0 3396 153 70 14 chr6 97818945 97819587 -91459967 - L1M2 LINE L1 -1614 4532 3841 3470 159 23 110 chr6 97820503 97821518 -91458036 + L1MC3 LINE L1 5214 5403 -743 1692 169 116 38 chr6 97821544 97821700 -91457854 + MSTA LTR MaLR 1 143 -285 6230 21 0 0 chr6 97821700 97822446 -91457108 + L1PA3 LINE L1 5434 6179 0 1692 169 116 38 chr6 97822446 97822685 -91456869 + MSTA LTR MaLR 143 428 0 317 230 237 22 chr6 97822686 97822825 -91456729 + L1MC2 LINE L1 6161 6329 -15 246 139 17 104 chr6 97826615 97826730 -91452824 + T-rich Low_complexity Low_complexity 2 106 0 1775 99 43 56 chr6 97826742 97827064 -91452490 - L1MA2 LINE L1 0 6304 5987 1374 171 91 22 chr6 97827269 97827543 -91452011 - MER1B DNA MER1_type -1 338 46 201 132 0 0 chr6 97827710 97827748 -91451806 + (TTAA)n Simple_repeat Simple_repeat 4 41 0 547 213 107 7 chr6 97828668 97828818 -91450736 - MIR SINE MIR 0 262 98 27 0 0 0 chr6 97829057 97829084 -91450470 + AT_rich Low_complexity Low_complexity 1 27 0 182 336 78 67 chr6 97829744 97830027 -91449527 + L2 LINE L2 2982 3267 -5 285 297 77 0 chr6 97832013 97832104 -91447450 + MIR SINE MIR 12 109 -153 1719 187 26 3 chr6 97832377 97832682 -91446872 + AluJb SINE Alu 1 312 0 923 156 12 0 chr6 97832702 97832875 -91446679 + GA-rich Low_complexity Low_complexity 1 175 0 708 327 73 18 chr6 97833011 97833503 -91446051 - LTR33 LTR ERVL 0 521 3 23 0 0 0 chr6 97837165 97837188 -91442366 + AT_rich Low_complexity Low_complexity 1 23 0 363 303 87 50 chr6 97838403 97838644 -91440910 - MIR SINE MIR 0 262 13 227 290 120 30 chr6 97840197 97840297 -91439257 + MIR SINE MIR 37 145 -63 1825 179 23 3 chr6 97840314 97840667 -91438887 + MER82 DNA MER2_type 2 361 -292 9982 182 47 12 chr6 97840672 97841542 -91438012 - L1MA1 LINE L1 0 7721 6883 2372 110 0 0 chr6 97841542 97841852 -91437702 - AluY SINE Alu -1 310 1 9982 182 47 12 chr6 97841852 97845769 -91433785 - L1MA1 LINE L1 -838 6883 2596 4150 164 34 58 chr6 97845769 97846635 -91432919 - L1MA1 LINE L1 -5434 2131 1287 362 88 18 0 chr6 97846635 97846692 -91432862 - L1PA16 LINE L1 -192 5974 5917 534 250 0 44 chr6 97846693 97846829 -91432725 + MER82 DNA MER2_type 515 644 -9 188 359 22 22 chr6 97846934 97847026 -91432528 + L2 LINE L2 3220 3311 -2 197 206 0 41 chr6 97848251 97848324 -91431230 + GA-rich Low_complexity Low_complexity 3 72 0 1601 194 0 32 chr6 97848347 97848631 -91430923 + AluJo SINE Alu 1 275 -37 3346 242 82 17 chr6 97848659 97849856 -91429698 + HAL1 LINE L1 418 1692 -815 260 311 0 0 chr6 97849877 97849983 -91429571 + L1ME4a LINE L1 5767 5872 -298 418 154 0 0 chr6 97850026 97850104 -91429450 + L1MA9 LINE L1 6200 6277 -35 321 217 15 31 chr6 97850117 97850225 -91429329 + L1ME4a LINE L1 5871 5979 -185 2150 85 0 35 chr6 97851099 97851275 -91428279 - AluY SINE Alu -6 305 143 192 97 0 0 chr6 97851275 97851306 -91428248 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2150 85 0 35 chr6 97851306 97851445 -91428109 - AluY SINE Alu -168 143 1 258 122 110 24 chr6 97852303 97852385 -91427169 + L1ME4a LINE L1 5975 6063 -58 400 223 142 24 chr6 97852438 97852649 -91426905 + L1ME4a LINE L1 5844 6079 -42 497 155 0 0 chr6 97852661 97852762 -91426792 - FRAM SINE Alu 0 175 75 2337 78 24 3 chr6 97852792 97853088 -91426466 + AluSc SINE Alu 1 302 -7 7362 151 78 4 chr6 97854797 97857407 -91422147 + L1PBa LINE L1 6 2998 -3864 2294 141 6 0 chr6 97857407 97857767 -91421787 + L1PB1 LINE L1 5780 6143 -8 577 151 43 23 chr6 97858188 97858319 -91421235 - MSTC LTR MaLR -215 150 1 182 143 0 0 chr6 97859353 97859381 -91420173 + MIR SINE MIR 224 251 -11 1289 282 69 20 chr6 97859724 97860320 -91419234 + L1MCa LINE L1 16 640 -5902 1870 197 80 107 chr6 97860349 97861191 -91418363 + LTR1B LTR ERV1 8 826 0 515 226 96 7 chr6 97861224 97861285 -91418269 + L1MCa LINE L1 716 770 -5772 180 77 0 0 chr6 97861285 97861311 -91418243 + (CA)n Simple_repeat Simple_repeat 2 27 0 515 226 96 7 chr6 97861311 97861395 -91418159 + L1MCa LINE L1 770 874 -5668 24 32 0 0 chr6 97861443 97861474 -91418080 + AT_rich Low_complexity Low_complexity 1 31 0 658 171 31 47 chr6 97861491 97861684 -91417870 + L1MCa LINE L1 867 1056 -5486 2418 209 106 83 chr6 97861685 97863098 -91416456 - MER109 Unknown Unknown -1143 1289 145 2103 219 16 40 chr6 97863705 97864151 -91415403 + L1MCa LINE L1 1040 1466 -5076 2486 65 0 13 chr6 97864151 97864461 -91415093 + AluY SINE Alu 1 306 -5 2103 219 16 40 chr6 97864461 97864693 -91414861 + L1MCa LINE L1 1466 1702 -4840 427 309 140 16 chr6 97864713 97864956 -91414598 - MLT1L LTR MaLR -340 275 3 2274 150 20 22 chr6 97865580 97866033 -91413521 + L1MA7 LINE L1 5836 6287 -4 7010 73 2 0 chr6 97866047 97866964 -91412590 + L1PA8 LINE L1 5254 6172 0 1651 143 4 0 chr6 97867560 97867826 -91411728 - MER1A DNA MER1_type 0 529 263 530 168 46 0 chr6 97867841 97867973 -91411581 + L1MCa LINE L1 1741 2351 -4293 6337 91 8 42 chr6 97868091 97869662 -91409892 - L1PA7 LINE L1 -6 6463 4918 32494 112 15 10 chr6 97869668 97873338 -91406216 + L1PA6 LINE L1 11 3661 -2493 207 0 0 0 chr6 97873338 97873361 -91406193 + (CA)n Simple_repeat Simple_repeat 2 24 0 32494 112 15 10 chr6 97873361 97875782 -91403772 + L1PA6 LINE L1 3661 6132 -22 5305 23 0 0 chr6 97875782 97876391 -91403163 + L1PA3 LINE L1 5544 6152 -3 32494 112 15 10 chr6 97876391 97876407 -91403147 + L1PA6 LINE L1 6132 6146 -8 22798 120 18 20 chr6 97876401 97881300 -91398254 - L1PA7 LINE L1 -1527 4934 1 * 22577 103 2 2 chr6 97881302 97885624 -91393930 + L1PA7 LINE L1 1832 6154 0 13834 167 46 9 chr6 97885899 97890282 -91389272 + L1MA3 LINE L1 1061 5604 -1961 6140 147 7 8 chr6 97890290 97891679 -91387875 + L1MA3 LINE L1 6337 7724 0 4839 188 16 9 chr6 97892591 97894098 -91385456 + L1MA9 LINE L1 5985 7505 -226 2387 122 13 19 chr6 97894098 97894475 -91385079 - THE1C LTR MaLR 0 375 1 4839 188 16 9 chr6 97894475 97894672 -91384882 + L1MA9 LINE L1 7505 7699 -32 2095 131 63 26 chr6 97895069 97895420 -91384134 - THE1B LTR MaLR 0 364 1 10167 103 72 1 chr6 97895420 97896896 -91382658 - THE1B-int LTR MaLR 0 1580 1 2024 146 48 25 chr6 97896896 97897252 -91382302 - THE1B LTR MaLR 0 364 1 1464 247 39 20 chr6 97897524 97897982 -91381572 + MLT1C LTR MaLR 1 467 0 250 304 17 0 chr6 97899094 97899163 -91380391 + MIR SINE MIR 55 127 -81 222 167 0 42 chr6 97899760 97899808 -91379746 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 215 314 14 0 chr6 97901990 97902060 -91377494 + GA-rich Low_complexity Low_complexity 4 74 0 328 161 0 37 chr6 97902109 97902190 -91377364 - L1MA9 LINE L1 -9 6303 6226 782 182 0 5 chr6 97902197 97902384 -91377170 + L1M1 LINE L1 2437 2622 -4943 1092 181 8 36 chr6 97902387 97902636 -91376918 - L1MA10 LINE L1 -90 6244 6003 865 243 67 0 chr6 97903370 97903580 -91375974 - MER58A DNA MER1_type 0 224 1 925 282 29 11 chr6 97903722 97904028 -91375526 + MLT1G1 LTR MaLR 1 354 -241 442 316 59 5 chr6 97904020 97904207 -91375347 + MLT1J2 LTR MaLR 156 352 -98 * 764 222 60 0 chr6 97904755 97904940 -91374614 + MER58B DNA MER1_type 3 198 -143 494 45 0 0 chr6 97904948 97905014 -91374540 - L1PA4 LINE L1 0 6155 6090 495 47 0 0 chr6 97905014 97905078 -91374476 + L1PA4 LINE L1 6024 6087 -68 640 204 8 0 chr6 97905078 97905210 -91374344 + MER58B DNA MER1_type 205 337 -4 216 333 0 0 chr6 97906615 97906687 -91372867 - MIR3 SINE MIR -5 203 132 433 267 34 40 chr6 97907649 97907825 -91371729 + MER5B DNA MER1_type 4 178 0 634 275 100 15 chr6 97909635 97909904 -91369650 + MLT1J1 LTR MaLR 23 314 -132 329 243 184 37 chr6 97909911 97910047 -91369507 - MIR SINE MIR -87 175 20 893 226 0 0 chr6 97910927 97911091 -91368463 + AluJb SINE Alu 137 300 -12 729 154 0 0 chr6 97911416 97911520 -91368034 - FLAM_A SINE Alu -19 123 20 25 0 0 0 chr6 97911729 97911754 -91367800 + AT_rich Low_complexity Low_complexity 1 25 0 423 0 0 0 chr6 97912434 97912481 -91367073 + (CA)n Simple_repeat Simple_repeat 2 48 0 540 194 0 32 chr6 97912910 97913034 -91366520 + MER106B DNA MER1_type 30 149 -910 24 0 0 0 chr6 97913043 97913067 -91366487 + AT_rich Low_complexity Low_complexity 1 24 0 246 32 0 0 chr6 97913453 97913484 -91366070 + (CACAT)n Simple_repeat Simple_repeat 4 34 0 411 277 55 43 chr6 97913653 97913909 -91365645 - MIR SINE MIR -2 260 2 407 269 28 57 chr6 97913919 97914060 -91365494 + MIR SINE MIR 15 151 -111 720 239 20 0 chr6 97914115 97914312 -91365242 + L1M4 LINE L1 4533 4733 -1413 6048 105 20 11 chr6 97914334 97915712 -91363842 - L1PA16 LINE L1 -2 6164 4775 6895 202 10 12 chr6 97915721 97916800 -91362754 - L1 LINE L1 -1279 4867 3791 2240 123 0 0 chr6 97916800 97917101 -91362453 - AluSx SINE Alu -11 301 1 6895 202 10 12 chr6 97917101 97917653 -91361901 - L1 LINE L1 -2355 3791 3239 836 160 24 0 chr6 97917658 97917827 -91361727 + L1M4 LINE L1 4724 4896 -1250 383 175 50 0 chr6 97917827 97917907 -91361647 + L1MC1 LINE L1 6250 6333 0 1736 263 13 7 chr6 97919907 97920363 -91359191 - LTR31 LTR ERV1 -15 604 146 393 58 0 0 chr6 97921508 97921560 -91357994 + (CA)n Simple_repeat Simple_repeat 1 52 0 295 276 60 37 chr6 97922051 97922185 -91357369 - MIR SINE MIR 0 262 126 317 289 237 13 chr6 97922699 97923316 -91356238 + L2 LINE L2 2005 2759 -555 180 0 0 0 chr6 97923435 97923455 -91356099 + (TG)n Simple_repeat Simple_repeat 1 20 0 389 335 120 0 chr6 97923935 97924102 -91355452 - MIR SINE MIR -55 207 21 4395 182 44 11 chr6 97925835 97926670 -91352884 - MER21B LTR ERV1 0 863 1 250 279 51 13 chr6 97927843 97927922 -91351632 - MIR3 SINE MIR -44 164 83 1156 234 39 30 chr6 97927963 97928394 -91351160 + MER113 DNA MER1_type? 82 516 -5 183 366 49 12 chr6 97928426 97928508 -91351046 - L2 LINE L2 -63 3209 3125 219 241 0 52 chr6 97929734 97929792 -91349762 - L2 LINE L2 0 3313 3259 337 311 42 8 chr6 97930833 97930952 -91348602 + L1MC4 LINE L1 6581 6703 -1339 * 387 258 0 0 chr6 97930876 97930965 -91348589 - L1MC4 LINE L1 -1339 6703 6615 517 125 12 0 chr6 97931821 97931901 -91347653 + Tigger4(Zombi) DNA MER2_type 25 105 -2626 1141 93 6 0 chr6 97931901 97932062 -91347492 - THE1B LTR MaLR 0 364 203 * 1634 183 28 3 chr6 97932059 97932382 -91347172 + MER41B LTR ERV1 305 635 0 1575 214 35 22 chr6 97932382 97932788 -91346766 + L1ME1 LINE L1 5613 6023 -143 1337 193 78 30 chr6 97932837 97933107 -91346447 + AluJb SINE Alu 3 285 -27 348 188 0 43 chr6 97933107 97933145 -91346409 + AluJo SINE Alu 3 307 0 557 269 0 0 chr6 97933146 97933295 -91346259 + L1MA10 LINE L1 6174 6322 -12 1815 108 78 99 chr6 97934066 97934273 -91345281 - THE1B LTR MaLR 0 364 167 5847 47 0 11 chr6 97934273 97935028 -91344526 - L1PA5 LINE L1 0 6154 5432 1815 108 78 99 chr6 97935028 97935192 -91344362 - THE1B LTR MaLR -197 167 1 308 296 72 8 chr6 97936357 97936482 -91343072 - MER5A DNA MER1_type 0 189 57 311 317 102 32 chr6 97936569 97936755 -91342799 + L3b LINE CR1 1291 1489 -94 232 176 40 68 chr6 97937140 97937214 -91342340 - MLT1K LTR MaLR -331 257 186 1312 87 5 5 chr6 97938390 97938575 -91340979 - AluY SINE Alu -9 302 118 1562 185 94 79 chr6 97938983 97939337 -91340217 - L1MB5 LINE L1 -9 6165 5801 2297 75 10 0 chr6 97939337 97939631 -91339923 - AluSp SINE Alu -16 297 1 1562 185 94 79 chr6 97939631 97939757 -91339797 - L1MB5 LINE L1 -373 5801 5678 342 0 0 0 chr6 97941255 97941293 -91338261 + (TG)n Simple_repeat Simple_repeat 2 39 0 1147 139 23 14 chr6 97941423 97941638 -91337916 - L1MB2 LINE L1 -2 6169 5953 323 352 62 12 chr6 97941655 97941817 -91337737 - MIR3 SINE MIR -16 192 23 743 274 73 5 chr6 97942747 97942845 -91336709 + MIR SINE MIR 15 105 -157 5422 124 41 2 chr6 97942845 97944055 -91335499 - L1PA15 LINE L1 -3 6162 4921 743 274 73 5 chr6 97944055 97944175 -91335379 + MIR SINE MIR 105 248 -14 478 285 58 29 chr6 97944522 97944694 -91334860 + L2 LINE L2 3130 3306 -7 185 305 12 124 chr6 97944702 97944961 -91334593 + L2 LINE L2 2882 3111 -161 3006 207 61 77 chr6 97946918 97948239 -91331315 - L1MC5 LINE L1 -36 7925 6625 1536 214 0 10 chr6 97948245 97948535 -91331019 - AluJb SINE Alu -25 287 1 986 194 81 9 chr6 97948583 97948794 -91330760 - AluJb SINE Alu 0 312 87 378 324 68 54 chr6 97948796 97949092 -91330462 - L1MC4a LINE L1 -1228 6580 6281 21 36 0 0 chr6 97949149 97949177 -91330377 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 97949287 97949311 -91330243 + AT_rich Low_complexity Low_complexity 1 24 0 1298 278 88 2 chr6 97949436 97949925 -91329629 - L1MC4a LINE L1 -1982 5826 5296 1178 211 70 99 chr6 97950268 97950371 -91329183 + L1MC4 LINE L1 7463 7567 -475 3145 137 16 22 chr6 97950371 97950598 -91328956 - L1MC1 LINE L1 -3 6330 6103 1778 163 120 28 chr6 97950598 97950990 -91328564 - MSTA LTR MaLR 0 428 1 3145 137 16 22 chr6 97950990 97951317 -91328237 - L1MC1 LINE L1 -230 6103 5779 1178 211 70 99 chr6 97951317 97951670 -91327884 + L1MC4 LINE L1 7567 7901 -141 249 57 0 0 chr6 97951670 97951705 -91327849 + (TG)n Simple_repeat Simple_repeat 2 36 0 1178 211 70 99 chr6 97951705 97951844 -91327710 + L1MC4 LINE L1 7901 8042 0 225 326 35 0 chr6 97952116 97952257 -91327297 - L1MC4a LINE L1 -1544 4602 4457 24 0 0 0 chr6 97952797 97952821 -91326733 + AT_rich Low_complexity Low_complexity 1 24 0 3682 39 2 0 chr6 97953176 97953639 -91325915 + L1P3 LINE L1 5320 5783 -371 292 290 7 22 chr6 97953677 97953815 -91325739 + GA-rich Low_complexity Low_complexity 1 136 0 1962 37 4 4 chr6 97954467 97954709 -91324845 - L1PA5 LINE L1 -4 6150 5909 188 280 59 68 chr6 97954834 97954952 -91324602 + L2 LINE L2 1916 2032 -1282 6969 43 24 5 chr6 97956740 97957896 -91321658 + L1PA6 LINE L1 4969 6150 -4 2171 119 0 0 chr6 97958003 97958296 -91321258 - AluSc SINE Alu -12 297 5 405 177 0 0 chr6 97958560 97958639 -91320915 + (TA)n Simple_repeat Simple_repeat 2 80 0 1295 64 112 0 chr6 97958649 97958836 -91320718 + L1PA6 LINE L1 5782 5989 -165 198 209 0 0 chr6 97958839 97958882 -91320672 + (TA)n Simple_repeat Simple_repeat 1 43 0 2870 81 3 0 chr6 97960715 97961098 -91318456 + L1PA7 LINE L1 5769 6152 -2 845 362 85 27 chr6 97962931 97963704 -91315850 - L2 LINE L2 -467 2847 2030 23 54 0 0 chr6 97964175 97964212 -91315342 + AT_rich Low_complexity Low_complexity 1 37 0 247 212 47 24 chr6 97964329 97964414 -91315140 + L2 LINE L2 2997 3083 -189 21 71 0 0 chr6 97964494 97964536 -91315018 + AT_rich Low_complexity Low_complexity 1 42 0 226 209 0 0 chr6 97964679 97964722 -91314832 + L2 LINE L2 3230 3272 0 2527 127 2 38 chr6 97967339 97967757 -91311797 - MER57A LTR ERV1 0 403 1 389 241 61 66 chr6 97968082 97968294 -91311260 - MER106B DNA MER1_type -1 1058 25 21 0 0 0 chr6 97968732 97968753 -91310801 + AT_rich Low_complexity Low_complexity 1 21 0 201 175 0 0 chr6 97969857 97969897 -91309657 + (TA)n Simple_repeat Simple_repeat 1 40 0 28493 72 3 3 chr6 97969897 97974708 -91304846 - L1PA6 LINE L1 -9 6460 1650 41731 43 1 3 chr6 97974713 97980867 -91298687 + L1PA3 LINE L1 9 6152 -3 2665 115 84 7 chr6 97980873 97981325 -91298229 + L1MA1 LINE L1 5816 6302 0 180 0 0 0 chr6 97981424 97981444 -91298110 + (A)n Simple_repeat Simple_repeat 1 20 0 5470 156 5 23 chr6 97981444 97982474 -91297080 - L1PA6 LINE L1 -4796 1665 655 1449 147 0 12 chr6 97982490 97982735 -91296819 - L1PA6 LINE L1 -6219 242 1 1645 209 99 0 chr6 97982984 97983367 -91296187 - MLT1G LTR MaLR -13 577 157 182 222 123 62 chr6 97984125 97984206 -91295348 - MIR SINE MIR -5 257 172 2487 166 11 43 chr6 97984208 97984315 -91295239 + MSTB LTR MaLR 1 110 -316 2766 7 0 10 chr6 97984315 97984619 -91294935 + AluYa5 SINE Alu 1 301 -10 2487 166 11 43 chr6 97984619 97984951 -91294603 + MSTB LTR MaLR 110 426 0 9867 183 8 10 chr6 97984951 97986605 -91292949 + MSTB-int LTR MaLR 1 1650 -1 1852 174 31 37 chr6 97986608 97986958 -91292596 + MSTB LTR MaLR 79 426 0 297 0 0 0 chr6 97988445 97988478 -91291076 + (CA)n Simple_repeat Simple_repeat 2 34 0 278 294 110 15 chr6 97989428 97989564 -91289990 - L3b LINE CR1 -6 1577 1429 611 321 50 47 chr6 97991905 97992266 -91287288 - L2 LINE L2 -1 3271 2910 941 248 9 0 chr6 97992735 97992949 -91286605 - MIR SINE MIR -5 257 42 183 271 0 56 chr6 97993327 97993434 -91286120 + L2 LINE L2 2796 2896 -418 6568 117 143 116 chr6 97993465 97995116 -91284438 + pTR5 LTR ERV1 743 2438 0 1549 182 45 98 chr6 97995321 97995424 -91284130 + MER96B DNA MER1_type? 1 108 -309 1707 164 32 16 chr6 97995424 97995735 -91283819 - L1MB4 LINE L1 -1 6179 5864 1549 182 45 98 chr6 97995735 97995964 -91283590 + MER96B DNA MER1_type? 108 307 -110 1732 174 10 13 chr6 97995964 97996275 -91283279 + AluJo SINE Alu 1 310 -2 1549 182 45 98 chr6 97996275 97996381 -91283173 + MER96B DNA MER1_type? 307 417 0 393 298 91 0 chr6 97996603 97996724 -91282830 + L2 LINE L2 3136 3267 -5 938 94 0 0 chr6 97997913 97998030 -91281524 + FLAM_C SINE Alu 1 117 -16 219 102 41 41 chr6 97998222 97998271 -91281283 + (TTA)n Simple_repeat Simple_repeat 1 49 0 1786 162 16 114 chr6 97998282 97998713 -91280841 - MLT1B LTR MaLR 0 390 2 2325 74 20 0 chr6 97998961 97999259 -91280295 - AluY SINE Alu -7 304 1 722 204 171 0 chr6 97999399 97999551 -91280003 - MER45A DNA AcHobo 0 178 1 550 305 120 40 chr6 97999732 98000106 -91279448 - MLT1J2 LTR MaLR -46 404 1 2119 234 11 12 chr6 98000363 98000863 -91278691 - MER89 LTR ERV1 0 559 28 828 203 0 0 chr6 98000878 98001011 -91278543 - FLAM_A SINE Alu 0 133 1 324 333 36 0 chr6 98001088 98001199 -91278355 - L2 LINE L2 0 3313 3199 816 151 124 38 chr6 98001200 98001386 -91278168 - MER105 DNA DNA -2 202 1 1445 245 20 82 chr6 98001421 98001973 -91277581 + MER34 LTR ERV1 25 542 0 2231 123 13 29 chr6 98002128 98002503 -91277051 + L1MA1 LINE L1 5933 6301 -1 2226 64 0 4 chr6 98002503 98002768 -91276786 - AluY SINE Alu -17 294 31 7782 41 0 12 chr6 98002798 98003881 -91275673 + L1PA6 LINE L1 5082 6153 -1 326 318 136 19 chr6 98004445 98004703 -91274851 - L2 LINE L2 -339 2975 2688 629 232 56 78 chr6 98004811 98005207 -91274347 + LTR37A LTR ERV1 40 426 0 689 225 118 0 chr6 98005209 98005378 -91274176 + L1MC/D LINE L1 5574 5762 -2046 8112 32 0 0 chr6 98005420 98006451 -91273103 + L1PA3 LINE L1 5122 6152 -3 774 162 0 0 chr6 98006495 98006606 -91272948 + MER3 DNA MER1_type 1 111 -98 22 70 0 0 chr6 98006775 98006818 -91272736 + AT_rich Low_complexity Low_complexity 1 43 0 284 242 16 0 chr6 98006879 98006941 -91272613 - MER58 DNA MER1_type -161 63 1 314 187 27 13 chr6 98006941 98007016 -91272538 + MLT1I LTR MaLR 334 409 0 455 226 135 8 chr6 98007155 98007288 -91272266 - MLT1L LTR MaLR 0 615 466 182 373 15 0 chr6 98007710 98007777 -91271777 - L2 LINE L2 0 3272 3205 2002 99 0 96 chr6 98007996 98008328 -91271226 + AluSc SINE Alu 1 300 -9 1664 166 4 8 chr6 98009520 98009779 -91269775 + AluJo SINE Alu 1 258 -54 3398 209 12 12 chr6 98009836 98010488 -91269066 + MER82 DNA MER2_type 1 652 -1 206 360 9 9 chr6 98011356 98011467 -91268087 + MIR3 SINE MIR 89 199 -9 1438 160 51 4 chr6 98012700 98012975 -91266579 - L1MA5 LINE L1 0 6300 6013 230 206 56 0 chr6 98013137 98013244 -91266310 + (TAA)n Simple_repeat Simple_repeat 2 114 0 290 78 0 20 chr6 98013886 98013937 -91265617 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 12168 29 4 0 chr6 98013937 98016089 -91263465 - L1PA3 LINE L1 -24 6131 3976 12164 94 226 8 chr6 98016088 98018123 -91261431 + L1P5 LINE L1 2544 5184 -967 * 6465 36 0 6 chr6 98018123 98018854 -91260700 - L1PA3 LINE L1 0 6155 5429 12164 94 226 8 chr6 98018854 98019217 -91260337 + L1P5 LINE L1 5184 5466 -685 1861 146 0 39 chr6 98019530 98019838 -91259716 - AluSx SINE Alu -16 296 1 249 277 53 11 chr6 98020114 98020208 -91259346 + L3 LINE CR1 1317 1414 -163 597 195 31 145 chr6 98020214 98020281 -91259273 + L1MC4 LINE L1 7506 7579 -463 2423 70 0 0 chr6 98020281 98020579 -91258975 + AluY SINE Alu 1 298 -13 597 195 31 145 chr6 98020579 98020829 -91258725 + L1MC4 LINE L1 7579 7787 -255 205 345 48 12 chr6 98020906 98020990 -91258564 + L3 LINE CR1 1434 1520 -57 216 0 0 0 chr6 98021051 98021075 -91258479 + (A)n Simple_repeat Simple_repeat 1 24 0 2386 109 3 0 chr6 98021109 98021421 -91258133 + AluSq SINE Alu 1 313 0 1818 183 135 9 chr6 98021814 98022252 -91257302 + LTR54B LTR ERV1 4 496 -2 285 232 14 14 chr6 98022269 98022338 -91257216 - L2 LINE L2 -10 3262 3194 1210 19 25 6 chr6 98022525 98022687 -91256867 - L1P1 LINE L1 -659 5496 5332 607 200 21 116 chr6 98022687 98022714 -91256840 - MER58A DNA MER1_type -2203 217 189 924 190 139 121 chr6 98022714 98023103 -91256451 + MSTD LTR MaLR 1 396 0 607 200 21 116 chr6 98023103 98023265 -91256289 - MER58A DNA MER1_type -2231 189 46 26 0 0 0 chr6 98023515 98023541 -91256013 + AT_rich Low_complexity Low_complexity 1 26 0 214 248 177 53 chr6 98023735 98023848 -91255706 + MIR3 SINE MIR 4 130 -78 884 169 0 7 chr6 98024041 98024189 -91255365 + FRAM SINE Alu 1 146 -30 26 0 0 0 chr6 98024189 98024215 -91255339 + AT_rich Low_complexity Low_complexity 1 26 0 5906 134 37 17 chr6 98026233 98027240 -91252314 + Tigger3b DNA MER2_type 204 1230 -1 264 100 0 0 chr6 98027298 98027338 -91252216 + (CA)n Simple_repeat Simple_repeat 1 40 0 228 122 0 0 chr6 98027557 98027598 -91251956 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 213 154 0 0 chr6 98028058 98028097 -91251457 + (TG)n Simple_repeat Simple_repeat 1 39 0 255 61 0 0 chr6 98028593 98028626 -91250928 + (TG)n Simple_repeat Simple_repeat 1 33 0 1404 198 72 94 chr6 98029031 98029501 -91250053 + MLT1C LTR MaLR 6 465 -2 531 200 0 0 chr6 98030724 98030819 -91248735 + FRAM SINE Alu 75 169 -7 420 309 99 5 chr6 98031057 98031280 -91248274 - L1MC/D LINE L1 -2154 5654 5411 426 288 177 9 chr6 98031330 98031545 -91248009 + MIR SINE MIR 12 262 0 803 279 197 6 chr6 98031787 98032127 -91247427 - MLT1I LTR MaLR -2 407 3 215 355 83 60 chr6 98032138 98032334 -91247220 - L2 LINE L2 -74 3198 2989 3287 153 26 19 chr6 98032334 98032914 -91246640 - L1MB3 LINE L1 -1 6182 5599 215 355 83 60 chr6 98032914 98033066 -91246488 - L2 LINE L2 -283 2989 2842 2407 103 0 3 chr6 98034849 98035161 -91244393 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr6 98035208 98035240 -91244314 + AT_rich Low_complexity Low_complexity 1 32 0 7009 107 17 10 chr6 98035976 98037064 -91242490 + L1MA3 LINE L1 5210 6304 -1 1052 263 9 0 chr6 98037064 98037296 -91242258 + MER21B LTR ERV1 271 504 -359 1747 183 3 3 chr6 98037937 98038232 -91241322 - AluJo SINE Alu -15 297 3 1974 154 0 0 chr6 98038243 98038535 -91241019 - AluSx SINE Alu -14 298 7 479 257 15 37 chr6 98039165 98039301 -91240253 - MER5B DNA MER1_type 0 178 46 444 153 0 0 chr6 98039327 98039442 -91240112 + (TA)n Simple_repeat Simple_repeat 1 115 0 328 240 0 62 chr6 98039468 98039564 -91239990 + L1MC4 LINE L1 6614 6703 -1339 470 219 39 54 chr6 98039564 98039769 -91239785 - L1MC5 LINE L1 -70 7891 7690 235 256 103 13 chr6 98039938 98040016 -91239538 + L2 LINE L2 2255 2339 -975 269 303 96 32 chr6 98040173 98040391 -91239163 - L1MC4a LINE L1 -1762 6046 5815 6919 41 1 0 chr6 98040395 98041233 -91238321 - L1PA4 LINE L1 -3 6152 5255 21857 80 2 0 chr6 98041252 98044078 -91235476 - L1P LINE L1 -3297 2849 19 2140 95 3 14 chr6 98044167 98044461 -91235093 - AluY SINE Alu -4 307 17 369 260 94 55 chr6 98044699 98044880 -91234674 - Charlie8 DNA MER1_type -2137 280 93 1303 223 36 50 chr6 98044986 98045323 -91234231 + MLT1A1 LTR MaLR 2 333 -32 2178 118 3 0 chr6 98045394 98045683 -91233871 + AluSx SINE Alu 1 290 -22 686 215 8 0 chr6 98045754 98045875 -91233679 - FLAM_A SINE Alu -11 122 1 266 116 0 23 chr6 98045876 98045919 -91233635 + MLT1A1 LTR MaLR 324 365 0 1575 180 46 26 chr6 98046371 98046677 -91232877 + AluJo SINE Alu 1 312 0 2565 129 19 12 chr6 98046817 98047235 -91232319 - L1MA2 LINE L1 0 6304 5884 2231 106 3 0 chr6 98047633 98047926 -91231628 - AluSq SINE Alu -19 294 1 3539 206 62 77 chr6 98048430 98049751 -91229803 - L1MC5 LINE L1 -36 7925 6625 1539 214 0 7 chr6 98049757 98050046 -91229508 - AluJb SINE Alu -25 287 1 977 190 81 9 chr6 98050094 98050305 -91229249 - AluJb SINE Alu 0 312 87 359 304 81 68 chr6 98050307 98050603 -91228951 - L1MC4a LINE L1 -1228 6580 6281 21 36 0 0 chr6 98050660 98050688 -91228866 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 98050798 98050822 -91228732 + AT_rich Low_complexity Low_complexity 1 24 0 245 188 54 134 chr6 98050834 98050946 -91228608 - L1MC4a LINE L1 -1908 5900 5798 1485 282 91 2 chr6 98050947 98051472 -91228082 - L1MC4a LINE L1 -1982 5826 5255 1416 211 70 99 chr6 98051779 98051882 -91227672 + L1MC4 LINE L1 7463 7567 -475 3420 137 16 22 chr6 98051882 98052109 -91227445 - L1MC1 LINE L1 -3 6330 6103 1953 163 120 28 chr6 98052109 98052501 -91227053 - MSTA LTR MaLR 0 428 1 3420 137 16 22 chr6 98052501 98052828 -91226726 - L1MC1 LINE L1 -230 6103 5779 1416 211 70 99 chr6 98052828 98053181 -91226373 + L1MC4 LINE L1 7567 7901 -141 264 30 0 0 chr6 98053181 98053214 -91226340 + (TG)n Simple_repeat Simple_repeat 2 34 0 1416 211 70 99 chr6 98053214 98053353 -91226201 + L1MC4 LINE L1 7901 8042 0 465 281 156 72 chr6 98053432 98053766 -91225788 - L1MC4a LINE L1 -1328 4818 4457 24 0 0 0 chr6 98054306 98054330 -91225224 + AT_rich Low_complexity Low_complexity 1 24 0 3941 39 2 0 chr6 98054685 98055148 -91224406 + L1P3 LINE L1 5320 5783 -371 292 290 7 22 chr6 98055186 98055324 -91224230 + GA-rich Low_complexity Low_complexity 1 136 0 2092 37 4 4 chr6 98055985 98056227 -91223327 - L1PA5 LINE L1 -4 6150 5909 181 280 59 68 chr6 98056352 98056470 -91223084 + L2 LINE L2 1916 2032 -1282 7770 48 2 1 chr6 98058258 98059435 -91220119 + L1PA5 LINE L1 4969 6154 0 2245 74 14 10 chr6 98059437 98059734 -91219820 + L1PA8 LINE L1 5875 6172 0 2595 55 0 0 chr6 98059782 98060091 -91219463 + AluY SINE Alu 1 309 -2 301 347 20 0 chr6 98060104 98060202 -91219352 - MIR3 SINE MIR -23 185 86 2047 152 0 0 chr6 98060720 98061023 -91218531 + AluJb SINE Alu 1 303 -9 184 328 15 0 chr6 98061260 98061327 -91218227 - MIR SINE MIR -6 256 189 404 262 47 0 chr6 98062540 98062647 -91216907 - L2 LINE L2 0 3272 3161 651 298 51 48 chr6 98063608 98063984 -91215570 + L1MEd LINE L1 857 1230 -1260 2159 125 0 3 chr6 98063984 98064287 -91215267 + AluSg SINE Alu 1 302 -8 651 298 51 48 chr6 98064287 98064705 -91214849 + L1MEd LINE L1 1230 1732 -758 * 1821 158 45 10 chr6 98064683 98065158 -91214396 + L1M1 LINE L1 5090 5582 -704 * 1948 221 24 93 chr6 98065154 98065899 -91213655 + L1MEd LINE L1 2287 2980 -3149 1177 246 35 35 chr6 98065895 98066265 -91213289 + L1ME2 LINE L1 5795 6164 0 * 270 278 17 26 chr6 98066273 98066388 -91213166 + L1MC5 LINE L1 7772 7885 -76 1452 209 24 20 chr6 98066502 98066794 -91212760 - AluJb SINE Alu -19 293 1 533 275 81 12 chr6 98067074 98067234 -91212320 + MIR3 SINE MIR 34 204 -4 206 250 31 62 chr6 98067380 98067444 -91212110 + L2 LINE L2 3136 3197 -75 963 286 103 35 chr6 98067484 98067998 -91211556 - MLT1H LTR MaLR 0 549 1 255 304 48 108 chr6 98068670 98068920 -91210634 + L2 LINE L2 2935 3169 -103 22 56 0 0 chr6 98069169 98069205 -91210349 + AT_rich Low_complexity Low_complexity 1 36 0 837 224 0 0 chr6 98070253 98070409 -91209145 - FRAM SINE Alu -19 157 2 399 254 35 9 chr6 98070422 98070536 -91209018 + MER5B DNA MER1_type 46 162 -16 2493 158 13 0 chr6 98070588 98070973 -91208581 + MLT1B LTR MaLR 1 390 0 2188 143 16 26 chr6 98070990 98071369 -91208185 + THE1C LTR MaLR 1 375 0 213 305 24 12 chr6 98071788 98071870 -91207684 - L2 LINE L2 -5 3267 3185 320 172 0 0 chr6 98072135 98072193 -91207361 + L2 LINE L2 3256 3313 0 1067 202 32 5 chr6 98072325 98072543 -91207011 - MER67C LTR ERV1 0 710 487 417 278 20 40 chr6 98072535 98072686 -91206868 - MER67C LTR ERV1 -339 371 224 * 226 200 17 83 chr6 98072721 98072750 -91206804 - MER67C LTR ERV1 -492 218 193 2584 237 84 22 chr6 98072750 98073430 -91206124 - MER72 LTR ERV1 0 722 1 226 200 17 83 chr6 98073430 98073460 -91206094 - MER67C LTR ERV1 -517 193 163 297 343 15 37 chr6 98073716 98073850 -91205704 + MIR SINE MIR 21 151 -111 213 262 156 11 chr6 98073914 98074077 -91205477 + MIR SINE MIR 8 262 0 493 287 25 19 chr6 98074929 98075086 -91204468 + MIR SINE MIR 49 206 -56 2028 120 55 61 chr6 98075307 98075334 -91204220 - LTR56 LTR ERV1 0 437 411 5986 127 23 9 chr6 98075334 98075674 -91203880 + L1PA15 LINE L1 4302 4636 -1529 1882 170 7 0 chr6 98075674 98075962 -91203592 - AluJb SINE Alu -22 290 1 5986 127 23 9 chr6 98075962 98077479 -91202075 + L1PA15 LINE L1 4636 6165 0 2028 120 55 61 chr6 98077479 98077882 -91201672 - LTR56 LTR ERV1 -26 411 33 439 286 71 18 chr6 98078091 98078405 -91201149 - LTR16C LTR ERVL -8 483 127 1468 142 138 89 chr6 98082822 98083251 -91196303 + LTR7 LTR ERV1 1 450 0 201 291 0 0 chr6 98084256 98084311 -91195243 - MER91 DNA MER1_type 0 196 142 300 230 110 0 chr6 98084720 98084820 -91194734 - L1ME4a LINE L1 -235 5886 5776 306 0 0 0 chr6 98085547 98085581 -91193973 + (CAT)n Simple_repeat Simple_repeat 1 34 0 241 261 252 17 chr6 98086437 98086556 -91192998 + L2 LINE L2 3162 3308 -5 572 117 0 29 chr6 98087095 98087198 -91192356 - AluSp/q SINE Alu 0 313 214 1421 240 107 44 chr6 98087472 98087619 -91191935 - L1MD2 LINE L1 -252 6367 6231 1840 153 26 16 chr6 98087619 98087927 -91191627 - AluJb SINE Alu -1 311 1 1421 240 107 44 chr6 98087927 98087978 -91191576 - L1MD2 LINE L1 -388 6231 6185 2063 36 48 0 chr6 98087978 98088229 -91191325 - AluY SINE Alu -14 297 35 1421 240 107 44 chr6 98088229 98088534 -91191020 - L1MD2 LINE L1 -434 6185 5831 1265 80 0 0 chr6 98088588 98088739 -91190815 - AluSq/x SINE Alu -162 151 1 786 218 31 0 chr6 98088742 98088935 -91190619 - L1MD2 LINE L1 -632 5794 5596 396 195 0 0 chr6 98088931 98089008 -91190546 - L1MD2 LINE L1 -1566 4840 4764 * 2357 100 0 0 chr6 98089009 98089309 -91190245 - AluSg SINE Alu -9 301 2 2576 210 100 79 chr6 98089366 98090145 -91189409 - L1MD2 LINE L1 -3404 3002 2241 1787 143 14 21 chr6 98090145 98090424 -91189130 - AluJo SINE Alu -30 282 6 2576 210 100 79 chr6 98090424 98091687 -91187867 - L1MD2 LINE L1 -4165 2241 918 274 154 0 0 chr6 98091687 98091739 -91187815 - U5 snRNA snRNA -64 52 1 274 154 0 0 chr6 98091776 98091828 -91187726 - U5 snRNA snRNA -64 52 1 319 204 87 122 chr6 98091828 98092000 -91187554 - L1MD2 LINE L1 -5460 949 784 2157 134 0 13 chr6 98092525 98092832 -91186722 - AluSx SINE Alu -9 303 1 581 273 79 74 chr6 98093249 98093667 -91185887 + LTR16A LTR ERVL 1 435 -15 497 269 50 64 chr6 98093871 98094129 -91185425 + MLT1L LTR MaLR 335 615 0 211 53 26 26 chr6 98094265 98094303 -91185251 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 326 289 78 16 chr6 98094995 98095123 -91184431 + MIR3 SINE MIR 9 144 -64 344 341 31 8 chr6 98095759 98095888 -91183666 + L1MC4 LINE L1 7532 7663 -379 207 88 0 0 chr6 98096071 98096105 -91183449 + (TG)n Simple_repeat Simple_repeat 1 34 0 26 30 0 0 chr6 98096190 98096223 -91183331 + AT_rich Low_complexity Low_complexity 1 33 0 189 0 0 0 chr6 98096392 98096413 -91183141 + (A)n Simple_repeat Simple_repeat 1 21 0 284 263 12 12 chr6 98096440 98096520 -91183034 - MIR SINE MIR -96 166 87 264 30 0 0 chr6 98097632 98097665 -91181889 + (CA)n Simple_repeat Simple_repeat 1 33 0 1624 206 22 30 chr6 98098434 98098802 -91180752 - MLT1A1 LTR MaLR 0 365 1 425 250 21 0 chr6 98101436 98101532 -91178022 - MER5A DNA MER1_type -80 109 12 1852 176 3 3 chr6 98101639 98101978 -91177576 + AluJb SINE Alu 1 339 0 367 232 24 43 chr6 98102404 98102568 -91176986 + L1M4 LINE L1 3687 3847 -2299 1089 214 7 76 chr6 98102659 98102962 -91176592 - AluJb SINE Alu -30 282 1 22 0 0 0 chr6 98102962 98102984 -91176570 + AT_rich Low_complexity Low_complexity 1 22 0 5047 141 44 0 chr6 98103019 98104281 -91175273 + L1PA16 LINE L1 4842 6150 -16 28 29 0 0 chr6 98104284 98104319 -91175235 + AT_rich Low_complexity Low_complexity 1 35 0 1082 238 28 35 chr6 98104342 98104804 -91174750 + L1MB7 LINE L1 2025 2483 -3901 2076 135 0 3 chr6 98104820 98105131 -91174423 - AluSg SINE Alu 0 310 1 1305 204 9 69 chr6 98106437 98106869 -91172685 + L1MB7 LINE L1 2866 3271 -3111 967 162 57 9 chr6 98106854 98107083 -91172471 + L1M2 LINE L1 5266 5505 -786 * 1159 177 84 4 chr6 98107079 98107468 -91172086 + L1MB7 LINE L1 5265 5698 -712 2706 194 33 8 chr6 98107469 98108073 -91171481 + L1MB7 LINE L1 5801 6419 -1 345 243 130 79 chr6 98108364 98108541 -91171013 + MIR SINE MIR 71 256 -6 3496 79 11 2 chr6 98108564 98109031 -91170523 + L1PA7 LINE L1 5684 6154 0 180 262 36 60 chr6 98109344 98109428 -91170126 - MIR SINE MIR -97 165 84 2914 102 25 37 chr6 98109691 98110337 -91169217 + LTR8A LTR ERV1 1 726 -1 6184 95 26 1 chr6 98110838 98112485 -91167069 - L1PA14 LINE L1 -1 6160 4488 2844 9 0 9 chr6 98112587 98112905 -91166649 + AluYb8 SINE Alu 1 315 -3 250 269 77 105 chr6 98112932 98113046 -91166508 + Charlie4 DNA MER1_type 508 624 -1337 1252 129 76 23 chr6 98113046 98113273 -91166281 - L1MA4 LINE L1 0 6300 6056 3971 89 7 4 chr6 98113273 98113825 -91165729 + MER41A LTR ERV1 1 554 0 1252 129 76 23 chr6 98113825 98113861 -91165693 - L1MA4 LINE L1 -244 6056 6023 250 269 77 105 chr6 98113861 98114355 -91165199 + Charlie4 DNA MER1_type 624 1099 -862 1382 127 23 0 chr6 98114377 98114597 -91164957 + MER41A LTR ERV1 330 554 0 4268 119 27 23 chr6 98114597 98115209 -91164345 - L1MC1 LINE L1 -276 6057 5440 3984 91 7 0 chr6 98115209 98115759 -91163795 + MER41A LTR ERV1 1 554 0 4268 119 27 23 chr6 98115759 98115921 -91163633 - L1MC1 LINE L1 -893 5440 5280 * 7284 36 4 0 chr6 98115890 98117487 -91162067 - L1PA4 LINE L1 -2 6153 4549 4358 231 25 43 chr6 98117471 98118823 -91160731 - L1M4 LINE L1 -812 5334 4010 * 1980 116 0 4 chr6 98118823 98119099 -91160455 - AluSq SINE Alu -15 298 24 4358 231 25 43 chr6 98119099 98119232 -91160322 - L1M4 LINE L1 -2136 4010 3876 519 217 26 26 chr6 98119289 98119441 -91160113 - L1M4 LINE L1 -2258 3888 3737 355 230 53 33 chr6 98119467 98119619 -91159935 - Charlie4 DNA MER1_type -573 1388 1234 1309 242 26 92 chr6 98119692 98120042 -91159512 - LTR26E LTR ERV1 -27 592 194 2229 101 34 0 chr6 98120042 98120338 -91159216 + AluSx SINE Alu 1 306 -6 1309 242 26 92 chr6 98120338 98120478 -91159076 - LTR26E LTR ERV1 -425 194 46 1823 199 31 8 chr6 98120491 98120843 -91158711 - MSTB LTR MaLR -66 360 1 1091 157 6 0 chr6 98120908 98121074 -91158480 - AluSg SINE Alu -9 301 135 501 104 0 0 chr6 98121074 98121141 -91158413 - AluSg SINE Alu -243 67 1 2280 110 0 7 chr6 98121146 98121445 -91158109 - AluSq SINE Alu -16 297 1 1111 239 50 58 chr6 98121564 98122150 -91157404 + Charlie4 DNA MER1_type 1381 1961 0 317 198 27 72 chr6 98122442 98122553 -91157001 - L1MC5 LINE L1 -1187 6774 6669 2362 110 0 0 chr6 98122556 98122866 -91156688 - AluSx SINE Alu -2 310 1 1131 121 18 11 chr6 98123995 98124275 -91155279 + L1MA8 LINE L1 5701 6161 -130 218 289 26 79 chr6 98124359 98124473 -91155081 + MIR SINE MIR 49 156 -106 2333 94 0 7 chr6 98124526 98124835 -91154719 - AluSq SINE Alu -6 307 1 1614 182 193 42 chr6 98125021 98125621 -91153933 + MER63D DNA MER1_type 1 691 -370 572 212 0 0 chr6 98126347 98126460 -91153094 + L1MD3 LINE L1 7479 7591 -404 830 217 77 0 chr6 98126754 98126975 -91152579 + L1M4 LINE L1 4883 5120 -1026 203 0 0 36 chr6 98126975 98127003 -91152551 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 389 228 9 35 chr6 98128742 98128856 -91150698 + MIR SINE MIR 65 175 -87 257 27 54 0 chr6 98128934 98128971 -91150583 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 361 292 58 0 chr6 98130931 98131051 -91148503 + MIR SINE MIR 76 202 -60 227 289 36 18 chr6 98132084 98132250 -91147304 - L1P5 LINE L1 -687 5464 5296 312 273 58 0 chr6 98132296 98132417 -91147137 - L1M4 LINE L1 -913 5233 5106 295 299 65 52 chr6 98132471 98132625 -91146929 + MIR3 SINE MIR 32 187 -21 240 200 0 18 chr6 98132855 98132910 -91146644 + MER21B LTR ERV1 13 66 -797 200 96 19 77 chr6 98133040 98133092 -91146462 + (TTTTA)n Simple_repeat Simple_repeat 1 49 0 2365 88 3 0 chr6 98133131 98133425 -91146129 + AluSq SINE Alu 1 295 -18 2367 129 19 12 chr6 98133823 98134241 -91145313 + L1MA2 LINE L1 5884 6304 0 181 333 0 20 chr6 98234752 98234803 -91044751 - L2 LINE L2 -18 3295 3246 2093 119 14 0 chr6 98235057 98235352 -91044202 + AluSx SINE Alu 1 299 -13 296 299 56 56 chr6 98235508 98235652 -91043902 - L2 LINE L2 -656 2658 2515 1472 189 29 4 chr6 98236656 98236937 -91042617 + AluJo SINE Alu 1 288 -24 1286 73 0 24 chr6 98236967 98237131 -91042423 + AluY SINE Alu 1 160 -151 610 96 60 0 chr6 98237329 98237455 -91042099 + AluY SINE Alu 196 326 0 1451 138 28 0 chr6 98237469 98237687 -91041867 + AluSx SINE Alu 1 224 -88 239 173 39 0 chr6 98237787 98237839 -91041715 - Alu SINE Alu -247 54 1 608 205 90 0 chr6 98238368 98238490 -91041064 + MER2 DNA MER2_type 1 133 -212 541 182 0 0 chr6 98238718 98238806 -91040748 + AluJ/FLAM SINE Alu 4 91 -221 1790 169 30 0 chr6 98238806 98239101 -91040453 + AluSx SINE Alu 2 305 -7 2119 140 0 9 chr6 98239405 98239720 -91039834 + AluSx SINE Alu 1 312 0 23 0 0 0 chr6 98240051 98240074 -91039480 + AT_rich Low_complexity Low_complexity 1 23 0 2116 115 20 3 chr6 98240080 98240385 -91039169 + AluSq SINE Alu 1 310 -3 307 188 51 68 chr6 98240618 98240735 -91038819 + L1MC2 LINE L1 6204 6318 -26 2195 100 7 10 chr6 98240764 98241064 -91038490 - AluSp SINE Alu -14 299 1 1897 150 27 0 chr6 98241763 98242056 -91037498 + AluSq SINE Alu 1 301 -12 278 292 54 31 chr6 98242131 98242261 -91037293 - L2 LINE L2 -704 2610 2478 1107 273 139 2 chr6 98242328 98242596 -91036958 - MLT2E LTR ERVL 0 628 398 1692 141 85 7 chr6 98242596 98242879 -91036675 + AluJb SINE Alu 2 306 -6 1107 273 139 2 chr6 98242879 98243020 -91036534 - MLT2E LTR ERVL -230 398 163 688 194 86 27 chr6 98243076 98243139 -91036415 - MER3 DNA MER1_type -6 203 145 2294 90 3 0 chr6 98243139 98243440 -91036114 + AluY SINE Alu 1 302 -9 688 194 86 27 chr6 98243440 98243562 -91035992 - MER3 DNA MER1_type -64 145 7 321 295 62 36 chr6 98243912 98244329 -91035225 - L1ME4a LINE L1 -4 6117 5690 266 264 0 0 chr6 98244867 98244939 -91034615 + AluS SINE Alu 1 72 -227 2147 105 3 10 chr6 98245730 98246035 -91033519 - AluSx SINE Alu -9 303 1 781 198 97 39 chr6 98246959 98247166 -91032388 - MER20 DNA MER1_type 0 219 1 1447 178 57 14 chr6 98247333 98247614 -91031940 + AluSx SINE Alu 1 293 -19 2232 60 3 14 chr6 98247617 98247926 -91031628 + AluY SINE Alu 1 306 0 8468 127 53 11 chr6 98247977 98248551 -91031003 - Tigger2 DNA MER2_type -41 2677 2129 1759 155 48 10 chr6 98248551 98248842 -91030712 - AluJb SINE Alu -10 302 1 8468 127 53 11 chr6 98248842 98249720 -91029834 - Tigger2 DNA MER2_type -589 2129 1164 391 145 0 0 chr6 98249715 98249784 -91029770 + MER41A LTR ERV1 396 464 -90 * 2206 38 0 79 chr6 98250123 98250441 -91029113 + AluY SINE Alu 1 293 -18 22 35 0 0 chr6 98251300 98251329 -91028225 + GC_rich Low_complexity Low_complexity 1 29 0 286 271 159 46 chr6 98252150 98252301 -91027253 - MIR SINE MIR -71 191 24 351 242 172 16 chr6 98252491 98252677 -91026877 - L1ME4a LINE L1 -424 5697 5483 481 172 94 13 chr6 98253622 98253893 -91025661 + MER33 DNA MER1_type 1 324 0 258 290 84 61 chr6 98254064 98254195 -91025359 - L2 LINE L2 -1 3312 3179 1053 108 70 70 chr6 98256717 98256776 -91022778 + AluJb SINE Alu 86 144 -168 2145 137 0 0 chr6 98256776 98257076 -91022478 + AluSx SINE Alu 1 300 -12 1053 108 70 70 chr6 98257076 98257229 -91022325 + AluJb SINE Alu 143 298 -14 2062 132 10 3 chr6 98257306 98257616 -91021938 + AluSx SINE Alu 1 312 0 1765 94 34 23 chr6 98258466 98258731 -91020823 + AluSx SINE Alu 1 268 -44 243 0 0 0 chr6 98259474 98259501 -91020053 + (A)n Simple_repeat Simple_repeat 1 27 0 186 179 103 0 chr6 98259556 98259595 -91019959 - MIR SINE MIR -64 144 102 205 261 0 0 chr6 98259915 98259961 -91019593 + (TATG)n Simple_repeat Simple_repeat 1 46 0 2034 108 62 3 chr6 98260003 98260291 -91019263 + AluSx SINE Alu 1 305 -7 1548 178 30 17 chr6 98260738 98260871 -91018683 + AluJb SINE Alu 1 131 -181 2159 110 0 7 chr6 98260871 98261170 -91018384 + AluSq SINE Alu 1 297 -16 1548 178 30 17 chr6 98261170 98261334 -91018220 + AluJb SINE Alu 131 302 -10 631 200 14 48 chr6 98262419 98262564 -91016990 + FRAM SINE Alu 2 141 -35 562 111 32 95 chr6 98262562 98262688 -91016866 - AluSg/x SINE Alu -10 302 185 * 907 83 8 53 chr6 98262881 98263014 -91016540 - AluSq/x SINE Alu -185 127 1 24 0 0 0 chr6 98263026 98263050 -91016504 + AT_rich Low_complexity Low_complexity 1 24 0 215 240 53 27 chr6 98264024 98264099 -91015455 - L2 LINE L2 -94 3219 3143 21 0 0 0 chr6 98266218 98266239 -91013315 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 98270760 98270782 -91008772 + AT_rich Low_complexity Low_complexity 1 22 0 453 136 0 0 chr6 98273481 98273547 -91006007 + AluS SINE Alu 226 291 -21 1985 111 6 74 chr6 98274052 98274376 -91005178 - AluSx SINE Alu -10 302 1 865 196 73 5 chr6 98274525 98274729 -91004825 + MER20 DNA MER1_type 2 219 0 587 251 82 22 chr6 98274729 98274912 -91004642 + MIR SINE MIR 9 202 -60 210 286 152 27 chr6 98275343 98275455 -91004099 - MIR3 SINE MIR -45 163 38 1901 119 20 26 chr6 98275987 98276290 -91003264 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr6 98276497 98276527 -91003027 + AT_rich Low_complexity Low_complexity 1 30 0 305 169 17 0 chr6 98277275 98277334 -91002220 - L1MC/D LINE L1 -665 5668 5609 * 3830 169 117 18 chr6 98277329 98277694 -91001860 + L1MC1 LINE L1 5329 5656 -677 2018 141 3 0 chr6 98277694 98277992 -91001562 + AluSx SINE Alu 2 300 -12 3830 169 117 18 chr6 98277992 98278534 -91001020 + L1MC1 LINE L1 5656 6326 -7 1442 180 57 37 chr6 98279064 98279364 -91000190 + AluJo SINE Alu 5 310 -2 1794 120 20 40 chr6 98279818 98280118 -90999436 + AluSg SINE Alu 1 294 -16 2024 142 3 0 chr6 98281010 98281312 -90998242 + AluSx SINE Alu 1 303 -9 402 199 90 104 chr6 98282165 98282376 -90997178 + MIR SINE MIR 53 260 -2 2132 108 3 10 chr6 98283815 98284121 -90995433 - AluSx SINE Alu -8 304 1 225 304 62 62 chr6 98284340 98284501 -90995053 - L3 LINE CR1 -498 1079 919 1198 180 39 47 chr6 98285212 98285306 -90994248 + AluSx SINE Alu 43 136 -176 2234 102 3 0 chr6 98285306 98285599 -90993955 + AluSg SINE Alu 1 294 -16 1198 180 39 47 chr6 98285599 98285760 -90993794 + AluSx SINE Alu 136 296 -16 2471 60 3 3 chr6 98285844 98286145 -90993409 + AluY SINE Alu 1 301 -10 21 0 0 0 chr6 98286186 98286207 -90993347 + AT_rich Low_complexity Low_complexity 1 21 0 570 273 105 77 chr6 98286227 98286835 -90992719 + L2 LINE L2 2231 2855 -459 2142 82 3 14 chr6 98286869 98287163 -90992391 - AluSg SINE Alu -17 293 3 2242 106 0 0 chr6 98287168 98287469 -90992085 - AluSx SINE Alu -10 302 2 218 379 21 0 chr6 98287806 98287901 -90991653 - L3 LINE CR1 -1 1576 1480 2412 62 0 3 chr6 98287903 98288193 -90991361 - AluY SINE Alu -21 290 2 744 170 0 46 chr6 98288245 98288441 -90991113 + L1MC/D LINE L1 5152 5338 -816 2010 129 4 0 chr6 98288477 98288792 -90990762 - AluSx SINE Alu 0 317 2 3086 131 11 15 chr6 98288801 98288926 -90990628 + L1MC/D LINE L1 5313 5437 -907 3512 117 45 14 chr6 98288926 98289488 -90990066 + L1MA4 LINE L1 5718 6296 -4 3086 131 11 15 chr6 98289488 98289829 -90989725 + L1MC/D LINE L1 5437 5777 -567 25 65 0 0 chr6 98289829 98289875 -90989679 + AT_rich Low_complexity Low_complexity 1 46 0 296 309 21 21 chr6 98290063 98290160 -90989394 + MER5B DNA MER1_type 1 97 -81 1286 110 0 55 chr6 98290172 98290358 -90989196 + L1MC1 LINE L1 5793 5967 -366 2404 76 0 3 chr6 98290358 98290660 -90988894 + AluY SINE Alu 1 301 -10 1286 110 0 55 chr6 98290660 98290691 -90988863 + L1MC1 LINE L1 5967 5998 -335 1560 145 0 44 chr6 98292292 98292609 -90986945 + AluSg SINE Alu 1 303 -7 2021 121 0 4 chr6 98293129 98293409 -90986145 + AluSc SINE Alu 1 279 -30 207 0 0 0 chr6 98293413 98293436 -90986118 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 829 155 0 28 chr6 98295050 98295192 -90984362 - AluSq/x SINE Alu -175 138 1 253 233 134 86 chr6 98295291 98295438 -90984116 - L1M4 LINE L1 -2607 3539 3400 1718 154 28 18 chr6 98295438 98295724 -90983830 + AluJb SINE Alu 1 289 -23 253 233 134 86 chr6 98295724 98295889 -90983665 - L1M4 LINE L1 -2746 3400 3212 * 276 239 83 9 chr6 98295880 98295989 -90983565 - L1MC5 LINE L1 -32 7929 7813 1204 156 46 132 chr6 98296024 98296142 -90983412 + AluJo SINE Alu 5 132 -170 1774 148 0 32 chr6 98296142 98296420 -90983134 - AluSx SINE Alu -18 294 26 1204 156 46 132 chr6 98296420 98296627 -90982927 + AluJo SINE Alu 132 302 0 445 235 119 83 chr6 98296631 98296823 -90982731 - L1MC5 LINE L1 -262 7699 7515 677 217 148 16 chr6 98296823 98297012 -90982542 - MER58C DNA MER1_type -1 214 1 445 235 119 83 chr6 98297012 98297206 -90982348 - L1MC5 LINE L1 -446 7515 7299 377 246 69 61 chr6 98297340 98297629 -90981925 - L1MC4 LINE L1 -740 7221 6956 316 250 139 0 chr6 98297605 98297777 -90981777 - L1M4 LINE L1 -2904 3242 3047 * 6322 56 21 1 chr6 98297805 98298597 -90980957 - L1PA7 LINE L1 -1 6153 5346 1897 134 3 7 chr6 98298752 98299059 -90980495 - AluSq SINE Alu -7 306 1 1944 98 22 4 chr6 98299180 98299489 -90980065 - AluSc SINE Alu 0 314 1 23 33 0 0 chr6 98299496 98299526 -90980028 + AT_rich Low_complexity Low_complexity 1 30 0 866 193 12 12 chr6 98299720 98299881 -90979673 + FRAM SINE Alu 1 155 -21 318 333 11 37 chr6 98300038 98300227 -90979327 - L2 LINE L2 -248 3024 2841 400 216 82 41 chr6 98300303 98300474 -90979080 + MER112 DNA MER1_type 5 182 -78 256 328 47 0 chr6 98300488 98300552 -90979002 - MER91A DNA MER1_type -8 188 122 854 190 39 49 chr6 98300658 98300770 -90978784 - MER115 DNA AcHobo -7 686 575 2019 121 14 3 chr6 98300770 98301067 -90978487 + AluSx SINE Alu 1 300 -12 854 190 39 49 chr6 98301067 98301159 -90978395 - MER115 DNA AcHobo -118 575 484 1656 202 97 3 chr6 98301265 98301627 -90977927 - MLT1C LTR MaLR -71 396 1 327 342 110 45 chr6 98301654 98301913 -90977641 - L2 LINE L2 -1738 1576 1275 2313 117 3 0 chr6 98301913 98302222 -90977332 + AluSg SINE Alu 1 310 0 327 342 110 45 chr6 98302222 98302407 -90977147 - L2 LINE L2 -2039 1275 1103 1209 186 76 94 chr6 98302410 98302856 -90976698 - LTR8A LTR ERV1 0 727 290 952 181 61 132 chr6 98302904 98303214 -90976340 - LTR8A LTR ERV1 -439 288 1 1111 179 81 29 chr6 98303341 98303432 -90976122 - Charlie4a DNA MER1_type -1453 508 423 2034 168 58 0 chr6 98303432 98303777 -90975777 - MER47A DNA MER2_type -1 365 1 1111 179 81 29 chr6 98303777 98303992 -90975562 - Charlie4a DNA MER1_type -1538 423 186 357 141 0 115 chr6 98303994 98304072 -90975482 + MER67C LTR ERV1 268 336 -374 459 246 16 75 chr6 98304901 98305153 -90974401 - L1MEd LINE L1 -5183 936 700 4056 96 17 66 chr6 98305174 98305426 -90974128 - L1MA5A LINE L1 -7 6290 6027 2390 87 0 3 chr6 98305426 98305725 -90973829 - AluSp SINE Alu -15 298 1 4056 96 17 66 chr6 98305725 98305829 -90973725 - L1MA5A LINE L1 -270 6027 5919 2375 100 0 0 chr6 98305829 98306130 -90973424 - AluSq SINE Alu -11 302 2 4056 96 17 66 chr6 98306130 98306313 -90973241 - L1MA5A LINE L1 -378 5919 5785 1793 171 0 42 chr6 98306313 98306622 -90972932 - AluJo SINE Alu -16 296 1 4056 96 17 66 chr6 98306622 98306729 -90972825 - L1MA5A LINE L1 -512 5785 5674 879 211 29 0 chr6 98306735 98306906 -90972648 - Charlie4a DNA MER1_type -311 197 22 467 271 177 78 chr6 98306940 98307217 -90972337 - L2 LINE L2 -2532 782 534 2169 108 0 45 chr6 98307217 98307353 -90972201 + AluSx SINE Alu 1 142 -170 2150 109 3 0 chr6 98307353 98307667 -90971887 + AluSx SINE Alu 1 315 0 2169 108 0 45 chr6 98307667 98307843 -90971711 + AluSx SINE Alu 142 300 -12 467 271 177 78 chr6 98307843 98308063 -90971491 - L2 LINE L2 -2780 534 236 307 115 0 4 chr6 98308318 98308528 -90971026 + AluSx SINE Alu 1 302 0 2443 98 0 0 chr6 98308532 98308839 -90970715 + AluSc SINE Alu 3 309 0 671 221 8 0 chr6 98308917 98309044 -90970510 + FLAM_A SINE Alu 1 128 -5 315 182 273 28 chr6 98309059 98309235 -90970319 + L1ME4a LINE L1 5868 6086 -35 23 68 0 0 chr6 98309367 98309411 -90970143 + AT_rich Low_complexity Low_complexity 1 44 0 1573 189 31 7 chr6 98309497 98309788 -90969766 - AluJb SINE Alu -14 298 1 2128 109 7 7 chr6 98310010 98310303 -90969251 - AluSq SINE Alu -20 293 1 402 151 141 136 chr6 98310305 98310467 -90969087 - MER2 DNA MER2_type -7 338 173 1929 137 9 40 chr6 98310467 98310655 -90968899 - AluSx SINE Alu 0 312 137 1897 132 49 0 chr6 98310655 98310942 -90968612 - AluSg SINE Alu -9 301 1 1929 137 9 40 chr6 98310942 98311075 -90968479 - AluSx SINE Alu -175 137 1 402 151 141 136 chr6 98311075 98311111 -90968443 - MER2 DNA MER2_type -172 173 139 853 203 60 11 chr6 98311126 98311308 -90968246 + MER7A DNA MER2_type 1 189 -157 180 152 0 0 chr6 98311310 98311343 -90968211 + (TA)n Simple_repeat Simple_repeat 2 34 0 379 96 0 0 chr6 98311344 98311396 -90968158 - Tigger2 DNA MER2_type -1682 1036 985 803 165 0 67 chr6 98311417 98311581 -90967973 + AluJo SINE Alu 31 183 -129 452 203 0 0 chr6 98311581 98311655 -90967899 - AluJ/FLAM SINE Alu -237 75 2 1705 115 0 12 chr6 98311674 98311926 -90967628 - AluSx SINE Alu -1 311 63 1999 138 0 25 chr6 98312091 98312411 -90967143 - AluSx SINE Alu 0 312 1 2811 196 113 82 chr6 98312696 98313744 -90965810 - L1MC5 LINE L1 -51 7910 6844 2094 112 17 0 chr6 98313744 98314031 -90965523 - AluSx SINE Alu -20 292 1 2811 196 113 82 chr6 98314031 98314200 -90965354 - L1MC5 LINE L1 -1117 6844 6682 251 255 78 39 chr6 98314235 98314337 -90965217 + L2 LINE L2 2745 2850 -464 648 270 56 40 chr6 98314520 98314772 -90964782 + L2 LINE L2 3058 3313 0 354 247 0 0 chr6 98314974 98315067 -90964487 + CT-rich Low_complexity Low_complexity 2 94 0 1644 94 0 5 chr6 98315104 98315317 -90964237 - AluSx SINE Alu -100 212 1 2362 100 0 0 chr6 98315545 98315845 -90963709 - AluSx SINE Alu -7 305 6 1150 72 0 0 chr6 98315945 98316084 -90963470 + AluSc SINE Alu 157 295 -14 658 224 0 45 chr6 98316110 98316244 -90963310 + FLAM_A SINE Alu 5 132 -1 1481 189 14 25 chr6 98316251 98316536 -90963018 + AluJo SINE Alu 6 287 -25 1474 168 67 11 chr6 98316704 98316989 -90962565 - AluJo SINE Alu -11 301 1 227 143 24 0 chr6 98317199 98317241 -90962313 - MLT1B LTR MaLR -347 43 1 780 238 126 14 chr6 98318215 98318438 -90961116 + L2 LINE L2 2111 2358 -956 565 229 14 0 chr6 98318445 98318585 -90960969 + L1MA10 LINE L1 6180 6321 -13 1174 203 175 0 chr6 98319502 98319753 -90959801 - AluJo SINE Alu -7 295 1 23 33 0 0 chr6 98322997 98323027 -90956527 + GC_rich Low_complexity Low_complexity 1 30 0 348 218 150 54 chr6 98323474 98323621 -90955933 - MIR3 SINE MIR -23 239 79 232 281 144 29 chr6 98323881 98324020 -90955534 + L2 LINE L2 3159 3313 0 411 169 56 0 chr6 98324261 98324332 -90955222 + AluJ/FLAM SINE Alu 2 76 -236 21 0 0 0 chr6 98324346 98324367 -90955187 + AT_rich Low_complexity Low_complexity 1 21 0 232 265 154 0 chr6 98324476 98324593 -90954961 - L1MC4a LINE L1 -1845 5963 5829 936 176 50 11 chr6 98324596 98324778 -90954776 - AluJb SINE Alu -20 292 104 235 352 40 16 chr6 98324826 98324951 -90954603 + MER5B DNA MER1_type 1 128 -50 927 160 54 134 chr6 98324967 98325042 -90954512 - MER33 DNA MER1_type -2261 324 245 198 0 0 0 chr6 98325042 98325064 -90954490 + (TA)n Simple_repeat Simple_repeat 2 23 0 2385 66 13 20 chr6 98325064 98325369 -90954185 - AluY SINE Alu -8 303 1 927 160 54 134 chr6 98325369 98325401 -90954153 - MER33 DNA MER1_type -2339 246 213 1428 144 107 67 chr6 98325401 98325699 -90953855 + AluJb SINE Alu 1 310 -2 927 160 54 134 chr6 98325699 98325879 -90953675 - MER33 DNA MER1_type -2372 213 67 3289 122 13 6 chr6 98325879 98326353 -90953201 - L1PA14 LINE L1 -4 6157 5681 927 160 54 134 chr6 98326353 98326421 -90953133 - MER33 DNA MER1_type -2518 67 1 1706 161 15 4 chr6 98326544 98326811 -90952743 - AluJo SINE Alu -32 280 11 336 271 113 26 chr6 98327390 98327541 -90952013 - MIR SINE MIR -9 253 90 303 177 0 0 chr6 98327622 98327684 -90951870 + GA-rich Low_complexity Low_complexity 2 63 0 1446 267 212 9 chr6 98328364 98329056 -90950498 - L2 LINE L2 -1003 2311 1479 315 313 9 9 chr6 98330027 98330142 -90949412 + LTR33-int LTR ERVL 455 569 -4454 1994 122 35 0 chr6 98330692 98330979 -90948575 + AluSp SINE Alu 1 297 -16 2092 119 3 0 chr6 98331296 98331582 -90947972 - AluSx SINE Alu -25 287 1 375 256 13 0 chr6 98331618 98331696 -90947858 + LTR33-int LTR ERVL 568 646 -4377 2230 110 3 0 chr6 98331714 98332005 -90947549 - AluSx SINE Alu -20 292 1 4030 305 60 35 chr6 98332122 98333924 -90945630 + LTR33-int LTR ERVL 858 2704 -2319 1750 300 22 20 chr6 98333996 98334043 -90945511 + LTR33-int LTR ERVL 3019 3064 -1959 1001 166 7 0 chr6 98334043 98334194 -90945360 + FRAM SINE Alu 1 152 -14 1750 300 22 20 chr6 98334194 98334653 -90944901 + LTR33-int LTR ERVL 3064 3526 -1497 288 351 12 0 chr6 98334930 98334946 -90944608 + LTR33-int LTR ERVL 4537 4551 -472 292 361 15 0 chr6 98334946 98335076 -90944478 + MER89-int LTR ERV1 6280 6411 -390 288 351 12 0 chr6 98335076 98335095 -90944459 + LTR33-int LTR ERVL 4551 4703 -320 192 197 42 42 chr6 98335334 98335405 -90944149 - L3 LINE CR1 -856 721 651 1552 316 103 30 chr6 98335953 98336878 -90942676 - L2 LINE L2 -1878 1436 445 395 289 41 0 chr6 98336894 98337015 -90942539 - L2 LINE L2 -957 2357 2232 692 307 0 0 chr6 98337742 98337918 -90941636 + LTR33 LTR ERVL 1 176 -345 273 214 214 11 chr6 98338091 98338180 -90941374 + LTR33 LTR ERVL 413 519 -2 39052 60 11 1 chr6 98338911 98344997 -90934557 - L1PA5 LINE L1 0 6154 13 2177 136 0 0 chr6 98345141 98345449 -90934105 - AluY SINE Alu -3 308 1 729 168 0 0 chr6 98345819 98345932 -90933622 + FRAM SINE Alu 1 112 -64 378 253 129 15 chr6 98345966 98346163 -90933391 - L1MC5 LINE L1 -220 7822 7498 423 125 0 0 chr6 98346312 98346384 -90933170 + (TCCC)n Simple_repeat Simple_repeat 1 72 0 1830 169 3 13 chr6 98346384 98346685 -90932869 - AluJb SINE Alu -14 298 1 2332 95 3 0 chr6 98346734 98347028 -90932526 + AluSc SINE Alu 1 295 -14 285 29 0 0 chr6 98347231 98347265 -90932289 + (CA)n Simple_repeat Simple_repeat 2 35 0 2026 138 91 39 chr6 98347967 98348304 -90931250 + MSTA LTR MaLR 1 364 -64 2172 118 0 25 chr6 98348304 98348619 -90930935 + AluSx SINE Alu 1 307 -5 2026 138 91 39 chr6 98348619 98348688 -90930866 + MSTA LTR MaLR 364 428 0 631 298 207 6 chr6 98348892 98349244 -90930310 - L2 LINE L2 -19 3294 2872 437 164 14 0 chr6 98349266 98349339 -90930215 + AluJ/FLAM SINE Alu 1 74 -238 6573 170 88 52 chr6 98349339 98350957 -90928597 - MER52A LTR ERV1 0 1755 1 325 125 0 0 chr6 98350957 98351060 -90928494 + FLAM_C SINE Alu 71 173 0 1843 122 93 0 chr6 98351095 98351365 -90928189 - AluSx SINE Alu -17 295 1 282 333 0 0 chr6 98351371 98351458 -90928096 - L2 LINE L2 -528 2786 2700 22 35 0 0 chr6 98351459 98351488 -90928066 + AT_rich Low_complexity Low_complexity 1 29 0 555 145 8 60 chr6 98351654 98351682 -90927872 + MLT1A1 LTR MaLR 1 29 -336 2821 61 3 22 chr6 98351682 98352044 -90927510 - THE1A LTR MaLR 0 355 1 555 145 8 60 chr6 98352044 98352132 -90927422 + MLT1A1 LTR MaLR 29 111 -254 306 260 32 49 chr6 98352141 98352264 -90927290 - L1MC5 LINE L1 -465 7496 7376 2244 119 0 0 chr6 98352265 98352560 -90926994 - AluSx SINE Alu -17 295 1 1677 162 10 34 chr6 98352566 98352863 -90926691 - AluSx SINE Alu -22 290 1 6932 60 4 9 chr6 98353122 98354794 -90924760 - L1PA7 LINE L1 -1 6153 4485 1137 232 91 46 chr6 98354845 98355384 -90924170 - L1MC5 LINE L1 -766 7195 6633 240 35 0 0 chr6 98355393 98355422 -90924132 + (CA)n Simple_repeat Simple_repeat 2 30 0 1111 158 110 76 chr6 98355422 98355739 -90923815 + MLT1B LTR MaLR 1 328 -62 944 128 0 0 chr6 98355739 98355864 -90923690 - FLAM_C SINE Alu -18 125 1 420 141 0 0 chr6 98355868 98355939 -90923615 + MLT1B LTR MaLR 320 390 0 373 327 0 0 chr6 98356432 98356591 -90922963 - HAL1b LINE L1 -713 635 477 760 212 0 0 chr6 98356639 98356790 -90922764 + FRAM SINE Alu 20 170 -6 633 185 19 148 chr6 98356914 98357036 -90922518 + MER57-int LTR ERV1 555 625 -6912 1313 161 210 0 chr6 98357036 98357279 -90922275 + AluJo SINE Alu 1 294 -8 633 185 19 148 chr6 98357279 98357426 -90922128 + MER57-int LTR ERV1 625 789 -6748 2491 61 0 0 chr6 98357437 98357747 -90921807 + AluY SINE Alu 1 310 -1 521 200 0 0 chr6 98357757 98357852 -90921702 + AluJ/FLAM SINE Alu 1 95 -217 1359 139 35 4 chr6 98358160 98358596 -90920958 - LTR54 LTR ERV1 0 510 1 211 292 94 21 chr6 98358636 98358732 -90920822 - MIR SINE MIR -145 117 15 207 0 0 0 chr6 98358807 98358830 -90920724 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 622 12 0 12 chr6 98358830 98358905 -90920649 - L1PA3 LINE L1 -6 6149 6076 216 387 0 0 chr6 98358905 98358980 -90920574 - MER5A DNA MER1_type -64 125 51 2864 112 31 11 chr6 98359932 98360388 -90919166 - MER4C LTR ERV1 0 465 1 3479 141 29 40 chr6 98360398 98361114 -90918440 - MER4C-int LTR ERV1 -2 6596 5889 1009 228 0 9 chr6 98361339 98361550 -90918004 - AluSc SINE Alu -14 295 87 1290 199 20 68 chr6 98361550 98361846 -90917708 - AluJo SINE Alu -8 304 23 497 166 11 107 chr6 98361847 98361925 -90917629 + LTR49-int LTR ERV1 4023 4107 -2491 2401 90 0 7 chr6 98361925 98362224 -90917330 - AluSq SINE Alu -16 297 1 497 166 11 107 chr6 98362224 98362308 -90917246 + LTR49-int LTR ERV1 4107 4729 -1869 1390 138 5 0 chr6 98362320 98362523 -90917031 + AluSg/x SINE Alu 107 310 -2 1379 195 83 62 chr6 98362534 98363267 -90916287 + LTR49-int LTR ERV1 2814 4741 -1590 37 0 0 0 chr6 98363312 98363349 -90916205 + AT_rich Low_complexity Low_complexity 1 37 0 2115 109 3 20 chr6 98363350 98363643 -90915911 - AluSx SINE Alu -24 288 1 676 209 34 44 chr6 98364132 98364338 -90915216 + LTR49-int LTR ERV1 5439 5642 -1895 1956 177 3 3 chr6 98364548 98364859 -90914695 + AluJo SINE Alu 1 311 -1 2062 134 16 0 chr6 98364859 98365166 -90914388 + AluSx SINE Alu 1 312 0 291 215 203 0 chr6 98365222 98365301 -90914253 - MER5C DNA MER1_type -228 96 2 940 311 43 6 chr6 98365305 98365630 -90913924 - L2 LINE L2 -688 2626 2290 434 220 11 0 chr6 98365973 98366064 -90913490 + MLT1A2 LTR MaLR 4 95 -279 449 149 0 0 chr6 98366070 98366144 -90913410 - MLT1A2 LTR MaLR -7 367 294 336 102 0 0 chr6 98366276 98366325 -90913229 + (GA)n Simple_repeat Simple_repeat 1 49 0 736 241 6 0 chr6 98366325 98366495 -90913059 + MLT1A2 LTR MaLR 204 374 0 468 249 42 24 chr6 98366495 98366660 -90912894 - L1MC4a LINE L1 -1903 5905 5738 1097 177 146 91 chr6 98366788 98366827 -90912727 - MER31A LTR ERV1 -9 476 441 2047 141 10 3 chr6 98366827 98367124 -90912430 + AluSx SINE Alu 1 299 -13 1097 177 146 91 chr6 98367124 98367535 -90912019 - MER31A LTR ERV1 -44 441 1 963 283 44 44 chr6 98367612 98367972 -90911582 - L2 LINE L2 -3 3310 2951 5486 104 14 4 chr6 98369103 98369462 -90910092 - L1PB1 LINE L1 -3 6148 5794 369 0 0 0 chr6 98369462 98369503 -90910051 + (TG)n Simple_repeat Simple_repeat 1 41 0 5486 104 14 4 chr6 98369503 98370927 -90908627 - L1PB1 LINE L1 -357 5794 4392 12685 161 54 61 chr6 98371046 98371378 -90908176 - MER4-int LTR ERV1 -753 5845 5512 279 0 0 0 chr6 98371378 98371409 -90908145 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 12685 161 54 61 chr6 98371409 98372507 -90907047 - MER4-int LTR ERV1 -1086 5512 4409 2314 92 7 0 chr6 98372507 98372799 -90906755 - AluSq SINE Alu -19 294 1 12685 161 54 61 chr6 98372799 98372827 -90906727 - MER4-int LTR ERV1 -2189 4409 4382 1829 127 12 73 chr6 98372827 98373157 -90906397 - AluJb SINE Alu -2 310 1 12685 161 54 61 chr6 98373157 98374084 -90905470 - MER4-int LTR ERV1 -2216 4382 3451 1789 164 7 3 chr6 98374084 98374377 -90905177 + AluJb SINE Alu 1 294 -18 12685 161 54 61 chr6 98374377 98375465 -90904089 - MER4-int LTR ERV1 -3147 3451 2358 1980 131 0 3 chr6 98375465 98375777 -90903777 - AluSx SINE Alu 0 311 1 12685 161 54 61 chr6 98375777 98376523 -90903031 - MER4-int LTR ERV1 -4240 2358 1341 2344 128 0 0 chr6 98376523 98376835 -90902719 + AluSx SINE Alu 1 312 0 12685 161 54 61 chr6 98376835 98377203 -90902351 - MER4-int LTR ERV1 -5257 1341 972 227 186 0 17 chr6 98377203 98377262 -90902292 + (TA)n Simple_repeat Simple_repeat 2 59 0 33 0 0 0 chr6 98377275 98377308 -90902246 + AT_rich Low_complexity Low_complexity 1 33 0 882 20 0 0 chr6 98377308 98377409 -90902145 - L1PA5 LINE L1 -8 6146 6046 5229 99 12 15 chr6 98377442 98377803 -90901751 - L1PB1 LINE L1 0 6151 5791 324 0 0 0 chr6 98377803 98377839 -90901715 + (TG)n Simple_repeat Simple_repeat 2 37 0 5229 99 12 15 chr6 98377839 98378286 -90901268 - L1PB1 LINE L1 -360 5791 5345 597 180 10 0 chr6 98378286 98378386 -90901168 + FLAM_C SINE Alu 21 121 -22 2417 130 60 11 chr6 98378388 98379037 -90900517 - MER4C-int LTR ERV1 -5807 791 3 990 141 5 32 chr6 98379042 98379227 -90900327 - MER4C LTR ERV1 0 465 286 214 255 0 0 chr6 98380158 98380205 -90899349 + GA-rich Low_complexity Low_complexity 1 47 0 2028 137 18 0 chr6 98380274 98380559 -90898995 + AluSx SINE Alu 1 290 -22 328 43 0 0 chr6 98380622 98380668 -90898886 - L1P LINE L1 -4007 2139 2094 589 12 25 0 chr6 98380668 98380749 -90898805 + L1PA2 LINE L1 5843 5925 -230 22 0 0 0 chr6 98380927 98380949 -90898605 + AT_rich Low_complexity Low_complexity 1 22 0 2295 91 0 0 chr6 98381152 98381438 -90898116 - AluSq SINE Alu -27 286 1 2975 73 52 0 chr6 98381471 98381911 -90897643 - L1MA1 LINE L1 0 6302 5840 861 249 86 92 chr6 98381911 98382862 -90896692 - MER52A LTR ERV1 0 1755 667 508 31 0 0 chr6 98382871 98382935 -90896619 - L1MA3 LINE L1 -462 5843 5780 689 183 0 0 chr6 98383035 98383166 -90896388 - L1 LINE L1 -2011 4135 4005 1973 149 4 0 chr6 98383166 98383447 -90896107 - AluSx SINE Alu -30 282 1 1719 161 186 0 chr6 98383505 98383866 -90895688 + MSTA LTR MaLR 1 428 0 9401 140 10 35 chr6 98383868 98385487 -90894067 + MSTA-int LTR MaLR 3 1580 0 1088 178 232 10 chr6 98385487 98385780 -90893774 + MSTA LTR MaLR 1 358 -70 448 135 0 0 chr6 98385780 98385854 -90893700 + MLT2A2 LTR ERVL 380 453 0 1180 157 40 4 chr6 98386247 98386681 -90892873 - LTR54 LTR ERV1 0 510 1 1605 248 33 13 chr6 98386682 98387162 -90892392 - MER31-int LTR ERV1 -395 7142 6614 328 231 99 0 chr6 98387196 98387287 -90892267 - MER31-int LTR ERV1 -761 4110 4011 * 1741 176 48 6 chr6 98387283 98387406 -90892148 - MER31-int LTR ERV1 -529 4407 4291 1509 137 9 13 chr6 98387406 98387639 -90891915 - AluSp SINE Alu 0 313 82 1741 176 48 6 chr6 98387639 98387872 -90891682 - MER31-int LTR ERV1 -645 4291 4036 1252 152 62 35 chr6 98387866 98388155 -90891399 - MER31-int LTR ERV1 -1178 3758 3462 * 3532 44 2 16 chr6 98388164 98388614 -90890940 - L1PA6 LINE L1 -1 6153 5710 461 173 13 0 chr6 98388614 98388689 -90890865 - FRAM SINE Alu -83 93 18 351 152 45 106 chr6 98388695 98388890 -90890664 - MER31-int LTR ERV1 -1888 4058 3989 1493 219 178 27 chr6 98388959 98389589 -90889965 + MER50 LTR ERV1 10 734 0 520 219 25 19 chr6 98389608 98389768 -90889786 - MER31-int LTR ERV1 -2312 2624 2464 * 617 245 44 16 chr6 98389752 98390001 -90889553 - MER31-int LTR ERV1 -2550 2573 2318 1759 118 34 75 chr6 98390056 98390377 -90889177 + AluSx SINE Alu 5 312 0 360 232 9 18 chr6 98390530 98390642 -90888912 + MER4-int LTR ERV1 879 989 -4134 654 186 19 62 chr6 98390645 98390806 -90888748 + MER34C LTR ERV1 160 313 -272 508 225 76 105 chr6 98390808 98391348 -90888206 + MER4-int LTR ERV1 1135 2298 -3503 496 123 0 0 chr6 98391488 98391561 -90887993 + U4 snRNA snRNA 1 73 -72 21586 102 14 11 chr6 98391571 98394924 -90884630 + L1P LINE L1 11 3372 -2774 978 236 23 79 chr6 98394924 98395267 -90884287 + MER57A LTR ERV1 22 345 -58 400 128 26 13 chr6 98395247 98395325 -90884229 + LTR54 LTR ERV1 432 510 0 * 2029 146 3 0 chr6 98396083 98396378 -90883176 - AluSq SINE Alu -17 296 1 22 0 0 0 chr6 98396387 98396409 -90883145 + AT_rich Low_complexity Low_complexity 1 22 0 35556 41 4 1 chr6 98397222 98402620 -90876934 - L1PA3 LINE L1 -3 6152 739 4726 92 11 6 chr6 98402627 98403325 -90876229 - L1PB2 LINE L1 -3 6148 5447 831 243 48 45 chr6 98403430 98403764 -90875790 + MER90 LTR ERV1 1 335 -240 620 248 33 0 chr6 98403789 98403942 -90875612 + MER90 LTR ERV1 457 614 0 264 59 0 0 chr6 98404418 98404452 -90875102 + (TG)n Simple_repeat Simple_repeat 1 34 0 378 143 0 0 chr6 98404452 98404515 -90875039 + (GA)n Simple_repeat Simple_repeat 2 64 0 182 271 215 84 chr6 98404746 98404853 -90874701 + L2 LINE L2 3149 3269 -3 238 61 20 0 chr6 98405447 98405496 -90874058 - L1MD3 LINE L1 0 7995 7946 516 219 50 148 chr6 98405496 98405565 -90873989 - MLT1C LTR MaLR 0 467 393 1627 104 6 163 chr6 98405565 98405903 -90873651 + AluSg1 SINE Alu 1 285 -24 516 219 50 148 chr6 98405903 98406116 -90873438 - MLT1C LTR MaLR -74 393 213 615 363 47 32 chr6 98406119 98406378 -90873176 - MLT1A1 LTR MaLR 0 467 196 1776 198 34 0 chr6 98406378 98406727 -90872827 - MLT1A1 LTR MaLR -4 361 1 615 363 47 32 chr6 98406727 98406873 -90872681 - MLT1A1 LTR MaLR -271 196 54 1098 152 12 56 chr6 98407233 98407483 -90872071 - L1MD2 LINE L1 0 6359 6121 264 227 93 27 chr6 98407783 98407858 -90871696 + MIR SINE MIR 18 97 -165 22 35 0 0 chr6 98408077 98408106 -90871448 + AT_rich Low_complexity Low_complexity 1 29 0 232 323 105 67 chr6 98408212 98408602 -90870952 - L2 LINE L2 -1619 1695 1291 687 136 45 0 chr6 98408825 98408935 -90870619 + FLAM_C SINE Alu 14 128 -15 938 128 0 7 chr6 98409288 98409437 -90870117 + L1PA7 LINE L1 6007 6154 0 1020 105 0 0 chr6 98409527 98409740 -90869814 - L1M LINE L1 -745 5401 5214 5492 133 27 25 chr6 98410209 98411742 -90867812 - L1PB1 LINE L1 0 7570 6034 213 326 174 10 chr6 98411781 98411879 -90867675 - MER91A DNA MER1_type -50 146 33 736 156 8 0 chr6 98411888 98412016 -90867538 - MER50 LTR ERV1 -37 697 569 797 89 0 0 chr6 98412020 98412144 -90867410 - L1P LINE L1 -1721 4425 4302 5988 235 52 5 chr6 98412153 98413459 -90866095 - L1PA13 LINE L1 -5419 1368 1 19363 163 29 31 chr6 98413471 98413761 -90865793 - L1PB1 LINE L1 -1873 5692 5403 2223 113 0 3 chr6 98413761 98414063 -90865491 - AluSc SINE Alu -8 301 1 19363 163 29 31 chr6 98414063 98415968 -90863586 - L1PB1 LINE L1 -2162 5403 3497 1849 157 35 37 chr6 98415968 98416344 -90863210 - THE1C LTR MaLR 0 375 1 19363 163 29 31 chr6 98416344 98416517 -90863037 - L1PB1 LINE L1 -4068 3497 3325 2071 144 0 6 chr6 98416517 98416830 -90862724 + AluSx SINE Alu 1 311 -1 19363 163 29 31 chr6 98416830 98417803 -90861751 - L1PB1 LINE L1 -4240 3325 2352 585 121 35 69 chr6 98417803 98417919 -90861635 - HY1 scRNA scRNA 0 112 1 19363 163 29 31 chr6 98417919 98420254 -90859300 - L1PB1 LINE L1 -5213 2352 15 370 343 119 18 chr6 98420271 98420362 -90859192 + L2 LINE L2 1616 1696 -1618 180 0 0 0 chr6 98420362 98420382 -90859172 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 370 343 119 18 chr6 98420382 98420567 -90858987 + L2 LINE L2 1696 1920 -1394 551 248 7 7 chr6 98420574 98420723 -90858831 - Zaphod DNA AcHobo -4 4027 3879 1005 207 70 13 chr6 98420751 98420977 -90858577 - MER21B LTR ERV1 -14 849 611 308 280 13 0 chr6 98420977 98421052 -90858502 - MER2 DNA MER2_type 0 345 270 245 164 18 0 chr6 98421094 98421149 -90858405 - MER2 DNA MER2_type -135 210 155 483 148 0 0 chr6 98421210 98421291 -90858263 - MER2 DNA MER2_type -196 149 69 5447 61 8 1 chr6 98421291 98421945 -90857609 + SVA Other Other 712 1369 -17 216 0 0 0 chr6 98421949 98421973 -90857581 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 249 33 0 0 chr6 98422023 98422053 -90857501 + (A)n Simple_repeat Simple_repeat 1 30 0 293 233 0 0 chr6 98422073 98422133 -90857421 - MER8 DNA MER2_type -179 60 1 1479 209 124 6 chr6 98422138 98422468 -90857086 - MER21B LTR ERV1 -256 607 239 3846 82 6 0 chr6 98422468 98422993 -90856561 - L1PA6 LINE L1 0 6154 5627 34689 104 7 8 chr6 98422998 98428391 -90851163 - L1PA6 LINE L1 -743 5403 18 603 285 47 36 chr6 98428397 98428650 -90850904 - MER21B LTR ERV1 -607 256 1 424 262 8 48 chr6 98428650 98428771 -90850783 - MER115 DNA AcHobo -154 539 424 913 230 35 50 chr6 98428810 98429127 -90850427 + MLT1C LTR MaLR 6 317 -150 1998 173 18 18 chr6 98429127 98429408 -90850146 - MSTC LTR MaLR 0 428 145 1551 163 50 66 chr6 98429408 98429789 -90849765 + THE1C LTR MaLR 1 375 0 1998 173 18 18 chr6 98429789 98429895 -90849659 - MSTC LTR MaLR -282 146 41 1568 228 10 0 chr6 98429911 98430218 -90849336 - AluJb SINE Alu 0 312 3 265 200 0 0 chr6 98430218 98430273 -90849281 - MSTC LTR MaLR -373 55 1 833 182 0 7 chr6 98430273 98430421 -90849133 + MLT1C LTR MaLR 313 459 -8 1647 209 22 22 chr6 98430591 98430954 -90848600 - MLT1A1 LTR MaLR -2 363 1 2844 193 18 2 chr6 98431144 98431656 -90847898 + MLT2B1 LTR ERVL 1 520 0 549 266 79 39 chr6 98431667 98431870 -90847684 + L2 LINE L2 1921 2131 -1183 1942 160 0 31 chr6 98431908 98432226 -90847328 - AluSx SINE Alu -4 308 1 3123 128 35 13 chr6 98432250 98432739 -90846815 - MER41B LTR ERV1 -86 549 45 2015 134 161 11 chr6 98432739 98433111 -90846443 + MSTA LTR MaLR 1 428 0 3123 128 35 13 chr6 98433111 98433158 -90846396 - MER41B LTR ERV1 -590 45 1 1432 105 24 0 chr6 98433160 98433370 -90846184 - MER41B-int LTR ERV1 -3 5943 5729 501 122 67 11 chr6 98433366 98433456 -90846098 - MER41B-int LTR ERV1 -1175 6030 5936 * 668 186 42 78 chr6 98433442 98433465 -90846089 - MER41B-int LTR ERV1 -1662 5543 5521 3334 142 11 15 chr6 98433465 98433992 -90845562 + MER1A DNA MER1_type 3 527 0 668 186 42 78 chr6 98433992 98434135 -90845419 - MER41B-int LTR ERV1 -1684 5521 5383 401 207 12 0 chr6 98434150 98434232 -90845322 - MER41B-int LTR ERV1 -5863 83 1 881 156 7 0 chr6 98434232 98434386 -90845168 - MER41B LTR ERV1 0 635 481 1454 286 146 24 chr6 98434389 98435277 -90844277 + L2 LINE L2 2177 3188 -125 728 243 188 5 chr6 98436970 98437172 -90842382 + MIR SINE MIR 24 262 0 1009 219 92 77 chr6 98438171 98438650 -90840904 - MLT1D LTR MaLR -19 486 1 529 224 152 76 chr6 98438721 98438985 -90840569 - Charlie8 DNA MER1_type -2132 285 2 523 250 41 17 chr6 98439570 98439742 -90839812 + MER20B DNA MER1_type 2 177 -606 3256 174 10 10 chr6 98439809 98440414 -90839140 - L1PB4 LINE L1 -7 6149 5545 769 174 13 7 chr6 98440702 98440851 -90838703 + MLT1F1 LTR MaLR 418 567 0 226 206 27 14 chr6 98440854 98440927 -90838627 + LTR41 LTR ERVL 696 769 -4 22 56 0 0 chr6 98440929 98440965 -90838589 + AT_rich Low_complexity Low_complexity 1 36 0 221 316 13 0 chr6 98441212 98441288 -90838266 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 404 261 33 0 chr6 98441853 98441945 -90837609 - MIR SINE MIR -150 112 18 568 163 92 0 chr6 98442305 98442403 -90837151 + L1MC/D LINE L1 5624 5730 -2078 818 311 106 13 chr6 98442419 98442731 -90836823 + MLT1I LTR MaLR 7 347 -62 1608 186 7 7 chr6 98443283 98443573 -90835981 + AluJo SINE Alu 1 290 -22 390 91 0 0 chr6 98443865 98443920 -90835634 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 405 58 0 0 chr6 98445285 98445337 -90834217 + (TTCTCC)n Simple_repeat Simple_repeat 3 54 0 2422 87 0 0 chr6 98445339 98445650 -90833904 - AluY SINE Alu 0 311 1 1735 183 10 3 chr6 98445705 98445995 -90833559 + AluJb SINE Alu 5 296 -16 1885 147 67 64 chr6 98447029 98447403 -90832151 - THE1C LTR MaLR 0 375 1 6141 128 71 36 chr6 98447403 98447444 -90832110 - THE1C-int LTR MaLR 0 1580 1542 2263 121 0 13 chr6 98447444 98447758 -90831796 - AluSg SINE Alu 0 310 1 6141 128 71 36 chr6 98447758 98448749 -90830805 - THE1C-int LTR MaLR -38 1542 512 3143 69 71 0 chr6 98448750 98449117 -90830437 + MLT2A1 LTR ERVL 1 401 -43 369 0 0 0 chr6 98449117 98449158 -90830396 + (CA)n Simple_repeat Simple_repeat 2 42 0 3143 69 71 0 chr6 98449158 98449197 -90830357 + MLT2A1 LTR ERVL 401 436 -8 583 193 42 0 chr6 98449198 98449317 -90830237 + L1M2 LINE L1 2599 2722 -4127 1118 66 0 0 chr6 98449320 98449457 -90830097 + MLT2A1 LTR ERVL 307 443 -1 731 175 0 0 chr6 98449458 98449578 -90829976 - THE1C-int LTR MaLR -1095 556 437 1477 246 114 84 chr6 98449578 98450282 -90829272 + MER50 LTR ERV1 10 734 0 2440 95 6 3 chr6 98450282 98450618 -90828936 - THE1-int LTR MaLR -1235 345 9 1473 214 94 124 chr6 98450618 98451586 -90827968 - LTR1B LTR ERV1 0 1020 1 1099 132 50 11 chr6 98451598 98451765 -90827789 - THE1C LTR MaLR 0 375 216 180 0 0 0 chr6 98451765 98451785 -90827769 + (GA)n Simple_repeat Simple_repeat 1 20 0 1099 132 50 11 chr6 98451785 98451924 -90827630 - THE1C LTR MaLR -159 216 1 405 0 0 0 chr6 98452202 98452247 -90827307 + (TTA)n Simple_repeat Simple_repeat 2 46 0 189 388 33 25 chr6 98452936 98453057 -90826497 + L2 LINE L2 2634 2755 -559 347 326 39 0 chr6 98453288 98453417 -90826137 + MER94 DNA DNA 1 134 0 196 333 67 0 chr6 98453425 98453515 -90826039 + MIR SINE MIR 56 151 -111 428 74 0 0 chr6 98453644 98453698 -90825856 - U2 snRNA snRNA -131 57 4 3481 184 10 39 chr6 98453775 98453795 -90825759 - L1M1 LINE L1 -743 6105 6086 3746 159 26 47 chr6 98453795 98454498 -90825056 - L1PB4 LINE L1 -10 6146 5459 5280 111 12 3 chr6 98454498 98455230 -90824324 + L1PA14 LINE L1 5419 6158 -3 3481 184 10 39 chr6 98455230 98456155 -90823399 - L1M1 LINE L1 -760 6088 5263 * 42502 59 3 2 chr6 98456108 98462240 -90817314 + L1PA4 LINE L1 15 6152 -3 8614 208 39 113 chr6 98462251 98462650 -90816904 - L1M1 LINE L1 -4252 2597 2170 2092 119 7 0 chr6 98462650 98462944 -90816610 - AluSx SINE Alu -16 296 1 8614 208 39 113 chr6 98462944 98463492 -90816062 - L1M1 LINE L1 -4679 2170 1583 1663 211 0 3 chr6 98463492 98463804 -90815750 - AluJb SINE Alu -1 311 1 8614 208 39 113 chr6 98463804 98465657 -90813897 - L1M1 LINE L1 -5266 1583 5 3595 279 50 98 chr6 98465990 98468089 -90811465 + L1M2 LINE L1 10 2004 -4845 2845 152 5 5 chr6 98468089 98468511 -90811043 - L1PA15 LINE L1 -13 6152 5731 3595 279 50 98 chr6 98468511 98468590 -90810964 + L1M2 LINE L1 2004 2085 -4764 386 123 62 0 chr6 98468592 98468657 -90810897 + L1 LINE L1 3253 3321 -2825 3685 205 55 3 chr6 98468658 98469531 -90810023 + L1 LINE L1 3658 4575 -1571 18460 43 4 1 chr6 98469534 98472465 -90807089 - L1PA4 LINE L1 0 6155 3221 2006 118 3 10 chr6 98472571 98472859 -90806695 + AluSx SINE Alu 1 286 -26 1974 191 79 2 chr6 98472996 98473400 -90806154 + MER63B DNA MER1_type 2 436 0 475 281 85 12 chr6 98473491 98473655 -90805899 + MIR SINE MIR 46 221 -41 405 163 133 20 chr6 98474296 98474394 -90805160 - MER5B DNA MER1_type -69 109 1 22 0 0 0 chr6 98474909 98474931 -90804623 + AT_rich Low_complexity Low_complexity 1 22 0 204 289 0 89 chr6 98475065 98475155 -90804399 - MER5A DNA MER1_type -50 139 58 277 57 0 0 chr6 98475618 98475653 -90803901 + U2 snRNA snRNA 1 35 -153 336 320 73 60 chr6 98475915 98476284 -90803270 + L2 LINE L2 2130 2503 -811 232 213 0 0 chr6 98476691 98476752 -90802802 + L1MC4 LINE L1 6643 6703 -1339 228 149 0 0 chr6 98476762 98476809 -90802745 + (TA)n Simple_repeat Simple_repeat 2 48 0 2284 80 24 0 chr6 98476873 98477162 -90802392 + AluSg SINE Alu 1 296 -14 217 358 104 8 chr6 98477860 98477994 -90801560 - L2 LINE L2 -10 3262 3116 1803 161 33 7 chr6 98478032 98478331 -90801223 - AluJo SINE Alu -5 307 1 2259 94 19 3 chr6 98479623 98479930 -90799624 - AluSx SINE Alu 0 312 1 528 271 74 5 chr6 98480693 98480885 -90798669 + MIR SINE MIR 16 218 -44 432 294 22 22 chr6 98481068 98481252 -90798302 - L2 LINE L2 -178 3135 2952 1764 80 22 0 chr6 98481808 98482032 -90797522 - L1PA10 LINE L1 -3 6165 5937 180 97 0 0 chr6 98484391 98484422 -90795132 + (TG)n Simple_repeat Simple_repeat 1 31 0 1399 199 87 0 chr6 98484555 98484877 -90794677 - L1 LINE L1 -2139 4007 3658 386 123 62 0 chr6 98484878 98484943 -90794611 - L1 LINE L1 -2825 3321 3253 3527 280 47 95 chr6 98484945 98485025 -90794529 - L1M2 LINE L1 -4764 2085 2003 2845 152 5 5 chr6 98485025 98485447 -90794107 + L1PA15 LINE L1 5731 6152 -13 3527 280 47 95 chr6 98485447 98487547 -90792007 - L1M2 LINE L1 -4846 2003 10 8612 208 39 114 chr6 98487880 98489734 -90789820 + L1M2 LINE L1 5 1996 -4853 1663 211 0 3 chr6 98489734 98490046 -90789508 + AluJb SINE Alu 1 311 -1 8612 208 39 114 chr6 98490046 98490594 -90788960 + L1M2 LINE L1 1996 2170 -4679 2092 119 7 0 chr6 98490594 98490888 -90788666 + AluSx SINE Alu 1 296 -16 8612 208 39 114 chr6 98490888 98491287 -90788267 + L1M2 LINE L1 2170 2597 -4252 39938 53 3 1 chr6 98491298 98497438 -90782116 - L1PA4 LINE L1 -3 6152 1 2443 211 42 17 chr6 98497439 98497458 -90782096 + L1M2 LINE L1 2588 2605 -4243 3444 88 14 7 chr6 98497458 98497899 -90781655 + MLT2A1 LTR ERVL 1 444 0 2443 211 42 17 chr6 98497899 98498725 -90780829 + L1M2 LINE L1 2605 3458 -3390 * 4412 156 17 49 chr6 98498705 98499538 -90780016 + L1PA12 LINE L1 5361 6166 -2 1352 213 18 68 chr6 98499546 98499835 -90779719 + L1M2 LINE L1 3447 3749 -3099 6724 87 15 31 chr6 98499835 98501618 -90777936 + SVA Other Other 1 1386 0 1352 213 18 68 chr6 98501618 98501674 -90777880 + L1M2 LINE L1 3749 3806 -3042 287 25 25 0 chr6 98501674 98501714 -90777840 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1352 213 18 68 chr6 98501714 98501989 -90777565 + L1M2 LINE L1 3806 4009 -2839 7451 176 26 19 chr6 98501993 98503286 -90776268 + L1PA12 LINE L1 1 1303 -6278 463 169 0 0 chr6 98503286 98503357 -90776197 - THE1B LTR MaLR 0 375 305 198 0 0 0 chr6 98503357 98503379 -90776175 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7310 64 20 0 chr6 98503379 98504314 -90775240 - L1PA6 LINE L1 -18 6136 5197 32921 120 34 14 chr6 98504314 98509503 -90770051 - L1P LINE L1 -839 5307 14 1701 130 105 4 chr6 98509516 98509793 -90769761 - THE1B LTR MaLR -59 305 1 33834 91 10 58 chr6 98509810 98516275 -90763279 - L1PA4 LINE L1 0 6155 12 880 206 15 20 chr6 98516296 98516500 -90763054 - L1MB3 LINE L1 -3 6180 5978 3987 86 36 48 chr6 98516500 98517102 -90762452 - LTR61 LTR ERV1 0 595 1 10052 227 17 21 chr6 98517104 98519155 -90760399 - HERV3 LTR ERV1 0 8426 6385 204 158 0 0 chr6 98519155 98519193 -90760361 + T-rich Low_complexity Low_complexity 1 38 0 43300 51 2 1 chr6 98519211 98525355 -90754199 - L1PA3 LINE L1 -5 6150 1 6383 194 21 14 chr6 98525436 98526564 -90752990 - HERV3 LTR ERV1 -2134 6292 5157 683 205 16 0 chr6 98526562 98526684 -90752870 - HERV3 LTR ERV1 -4602 3824 3701 * 4660 265 94 62 chr6 98526683 98529265 -90750289 - HERV3 LTR ERV1 -5957 2469 1 3621 95 50 58 chr6 98529265 98529865 -90749689 - LTR61 LTR ERV1 0 595 1 3840 174 37 14 chr6 98529865 98530659 -90748895 - L1MB3 LINE L1 -202 5981 5173 224 29 86 0 chr6 98531475 98531510 -90748044 + A-rich Low_complexity Low_complexity 1 38 0 6900 212 73 38 chr6 98531706 98532888 -90746666 - L1MB3 LINE L1 -1007 5139 3849 2251 101 0 3 chr6 98532888 98533186 -90746368 - AluY SINE Alu -14 297 1 6900 212 73 38 chr6 98533186 98534109 -90745445 - L1MB3 LINE L1 -2297 3849 2960 839 184 11 0 chr6 98534109 98534283 -90745271 + CT-rich Low_complexity Low_complexity 3 178 0 1564 172 0 8 chr6 98534293 98534554 -90745000 - AluJo SINE Alu -53 259 1 279 0 0 0 chr6 98534575 98534606 -90744948 + (TC)n Simple_repeat Simple_repeat 2 32 0 261 83 0 0 chr6 98534605 98534641 -90744913 + (TA)n Simple_repeat Simple_repeat 1 36 0 * 416 185 0 11 chr6 98534606 98534722 -90744832 - L1 LINE L1 -2139 4007 3926 480 139 28 0 chr6 98534724 98534796 -90744758 - AluS SINE Alu -14 298 225 390 91 0 0 chr6 98534796 98534851 -90744703 + (TA)n Simple_repeat Simple_repeat 2 56 0 30102 127 13 59 chr6 98534851 98541279 -90738275 - L1PA7 LINE L1 -18 6136 12 2229 190 86 18 chr6 98541656 98542109 -90737445 + MLT1D LTR MaLR 22 505 0 365 291 79 46 chr6 98542277 98542518 -90737036 + MLT1L LTR MaLR 321 569 -46 559 262 126 32 chr6 98543531 98543630 -90735924 - MER7A DNA MER2_type -2702 336 248 22 35 0 0 chr6 98543630 98543659 -90735895 + AT_rich Low_complexity Low_complexity 1 29 0 559 262 126 32 chr6 98543659 98543840 -90735714 - MER7A DNA MER2_type -2790 248 1 600 271 58 39 chr6 98543846 98544104 -90735450 - HAL1 LINE L1 -28 2479 2217 1090 246 148 26 chr6 98544108 98544681 -90734873 - HAL1 LINE L1 -652 1855 1213 1855 266 58 8 chr6 98544681 98545195 -90734359 + MLT1F LTR MaLR 1 540 -2 263 186 49 147 chr6 98545233 98545335 -90734219 - MLT1G3 LTR MaLR -259 336 245 * 300 283 10 0 chr6 98545325 98545480 -90734074 - MLT1G3 LTR MaLR -412 118 1 22 0 0 0 chr6 98545566 98545588 -90733966 + AT_rich Low_complexity Low_complexity 1 22 0 1791 182 3 16 chr6 98546282 98546595 -90732959 + AluSq SINE Alu 4 312 -1 388 158 12 12 chr6 98547120 98547202 -90732352 + L1MA9 LINE L1 5940 6021 -291 21 36 0 0 chr6 98548969 98548997 -90730557 + AT_rich Low_complexity Low_complexity 1 28 0 2454 127 57 82 chr6 98549865 98549982 -90729572 - L1MA9 LINE L1 -5 6307 6189 2252 154 56 17 chr6 98549982 98550392 -90729162 + MSTB LTR MaLR 1 426 0 2454 127 57 82 chr6 98550392 98550832 -90728722 - L1MA9 LINE L1 -123 6189 5764 8422 106 8 5 chr6 98550832 98552874 -90726680 - L1PA7 LINE L1 -1 6468 4427 10379 136 32 25 chr6 98552875 98555022 -90724532 - L1PA7 LINE L1 -4278 2183 5 1692 198 55 8 chr6 98555027 98555752 -90723802 - L1MA9 LINE L1 -534 5778 5019 257 0 30 0 chr6 98555753 98555786 -90723768 + (TTA)n Simple_repeat Simple_repeat 3 36 0 7383 33 2 0 chr6 98555786 98557119 -90722435 - L1PA4 LINE L1 -18 6137 4803 13589 87 6 0 chr6 98557119 98559027 -90720527 - L1P LINE L1 -4226 1920 1 11987 104 58 12 chr6 98559050 98561119 -90718435 + MER4A-int LTR ERV1 4433 6596 -2 448 144 89 0 chr6 98561134 98561224 -90718330 + MER4A LTR ERV1 1 98 -566 1598 147 3 46 chr6 98561224 98561585 -90717969 + MER4A LTR ERV1 261 664 0 279 333 11 0 chr6 98562065 98562155 -90717399 + L2 LINE L2 1950 2040 -1274 1497 195 7 4 chr6 98562156 98562468 -90717086 - AluJb SINE Alu 0 319 7 417 236 13 89 chr6 98562514 98562671 -90716883 - MIR SINE MIR -10 252 108 339 302 17 17 chr6 98562730 98562846 -90716708 + L2 LINE L2 2172 2287 -1027 438 206 98 57 chr6 98563654 98563848 -90715706 - LTR16C LTR ERVL -2 489 288 601 238 17 35 chr6 98564255 98564427 -90715127 + MIR SINE MIR 94 262 0 6952 52 20 0 chr6 98564954 98565902 -90713652 - L1PA7 LINE L1 -5 6149 5197 13169 79 64 6 chr6 98565902 98567959 -90711595 - L1P LINE L1 -839 5307 3133 7878 40 0 0 chr6 98568059 98569093 -90710461 + L1P LINE L1 2228 3261 -2885 8823 85 6 0 chr6 98569193 98570586 -90708968 - L1P3 LINE L1 -661 5511 4113 1843 67 31 0 chr6 98570686 98571052 -90708502 - L1P2 LINE L1 -659 5495 5122 25169 105 11 10 chr6 98571166 98575103 -90704451 + L1P LINE L1 11 3953 -2193 1237 82 0 0 chr6 98575204 98575375 -90704179 + L1PA6 LINE L1 5984 6154 0 21 36 0 0 chr6 98575414 98575442 -90704112 + AT_rich Low_complexity Low_complexity 1 28 0 393 241 36 60 chr6 98575600 98575766 -90703788 + MLT1A2 LTR MaLR 1 162 -212 2161 231 46 68 chr6 98575781 98576493 -90703061 + L1P3 LINE L1 10 705 -5756 180 0 0 0 chr6 98576493 98576513 -90703041 + (CACAG)n Simple_repeat Simple_repeat 1 20 0 2161 231 46 68 chr6 98576513 98576585 -90702969 + L1P3 LINE L1 705 777 -5684 486 254 74 19 chr6 98576587 98576820 -90702734 + MLT1B LTR MaLR 68 340 -50 315 188 0 31 chr6 98576823 98576887 -90702667 - MLT1A2 LTR MaLR -312 62 1 291 288 108 22 chr6 98578518 98578657 -90700897 - L2 LINE L2 0 3313 3163 2148 84 7 0 chr6 98578674 98578947 -90700607 + AluSx SINE Alu 29 303 -9 1037 251 55 77 chr6 98579079 98579497 -90700057 - MLT2F LTR ERVL -254 409 1 276 333 89 39 chr6 98579502 98579682 -90699872 + L2 LINE L2 2848 3036 -277 820 237 51 117 chr6 98580110 98580545 -90699009 + MLT2F LTR ERVL 200 605 -58 655 347 74 40 chr6 98580568 98581217 -90698337 + ERVL LTR ERVL 1 693 -4984 4386 279 61 23 chr6 98581253 98581758 -90697796 + ERVL LTR ERVL 819 1304 -4460 2600 56 0 3 chr6 98581758 98582064 -90697490 - AluY SINE Alu -6 305 1 4386 279 61 23 chr6 98582064 98583207 -90696347 + ERVL LTR ERVL 1304 2529 -3235 1597 273 11 18 chr6 98583207 98583647 -90695907 - LTR40a LTR ERVL 0 519 83 1765 97 12 0 chr6 98583647 98583895 -90695659 - L1PA10 LINE L1 0 6168 5918 2996 103 6 0 chr6 98583995 98584583 -90694971 - L1PA10 LINE L1 -479 5689 5098 359 182 159 11 chr6 98584587 98584675 -90694879 - LTR40a LTR ERVL -418 101 1 356 286 9 18 chr6 98584676 98584788 -90694766 + ERVL LTR ERVL 2487 2597 -2888 1849 210 18 0 chr6 98584788 98585169 -90694385 + MLT2C2 LTR ERVL 1 388 -76 981 254 26 4 chr6 98585162 98585426 -90694128 - MER63B DNA MER1_type -165 271 2 * 283 189 225 18 chr6 98585549 98585660 -90693894 + Ricksha DNA DNA 207 340 -2906 1786 264 39 54 chr6 98585666 98586330 -90693224 + MLT2F LTR ERVL 2 655 -8 1162 312 81 8 chr6 98586355 98586911 -90692643 - L2 LINE L2 -513 2801 2162 492 322 98 5 chr6 98587605 98587819 -90691735 + MIR SINE MIR 29 262 0 221 139 23 0 chr6 98587890 98587933 -90691621 + CT-rich Low_complexity Low_complexity 1 44 0 1022 234 101 92 chr6 98587960 98588725 -90690829 + LTR41 LTR ERVL 1 772 -1 249 174 0 0 chr6 98588725 98588771 -90690783 - L1ME2 LINE L1 -11 6153 6108 197 119 24 0 chr6 98588820 98588862 -90690692 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1204 239 18 6 chr6 98588871 98589206 -90690348 - L1ME LINE L1 -342 5822 5484 217 138 15 62 chr6 98589406 98589471 -90690083 + T-rich Low_complexity Low_complexity 5 66 0 6108 143 7 7 chr6 98589472 98591155 -90688399 - L1PB1 LINE L1 -3 6148 4466 244 361 34 8 chr6 98591200 98591319 -90688235 + L2 LINE L2 3182 3303 -10 8598 138 21 25 chr6 98591418 98591548 -90688006 - L1MA3 LINE L1 -1 6304 6175 7271 31 0 0 chr6 98591548 98592773 -90686781 - L1PA4 LINE L1 -2 6153 4932 8598 138 21 25 chr6 98592773 98595441 -90684113 - L1MA3 LINE L1 -130 6175 3517 390 111 32 0 chr6 98595442 98595505 -90684049 + MLT1E LTR MaLR 529 593 0 15894 37 7 1 chr6 98595716 98598200 -90681354 - L1PA4 LINE L1 -308 5847 3348 13844 74 1 1 chr6 98598300 98600173 -90679381 - L1PA4 LINE L1 -4265 1881 8 710 214 7 19 chr6 98600173 98600327 -90679227 - AluJo SINE Alu -160 152 1 249 298 48 48 chr6 98600995 98601163 -90678391 - HAL1b LINE L1 -786 562 395 4798 40 0 2 chr6 98601710 98602292 -90677262 + L1PA4 LINE L1 5573 6153 -2 1644 130 92 31 chr6 98602349 98602642 -90676912 - AluSq SINE Alu -2 311 1 1622 221 3 7 chr6 98602722 98603021 -90676533 + AluJo SINE Alu 1 298 -14 22 70 0 0 chr6 98603191 98603234 -90676320 + AT_rich Low_complexity Low_complexity 1 43 0 26 64 0 0 chr6 98603337 98603384 -90676170 + AT_rich Low_complexity Low_complexity 1 47 0 24 32 0 0 chr6 98603760 98603791 -90675763 + AT_rich Low_complexity Low_complexity 1 31 0 1705 246 127 4 chr6 98604643 98605132 -90674422 - MLT1H1 LTR MaLR -5 544 1 328 294 64 72 chr6 98605292 98605527 -90674027 - MIR SINE MIR -12 250 18 * 526 298 88 15 chr6 98605462 98605667 -90673887 + MIR SINE MIR 43 262 0 2098 134 3 7 chr6 98605709 98606014 -90673540 + AluY SINE Alu 1 304 -7 2219 105 3 0 chr6 98606399 98606693 -90672861 + AluSc SINE Alu 3 297 -12 2395 96 3 0 chr6 98606693 98607005 -90672549 + AluSp SINE Alu 1 313 0 238 309 11 0 chr6 98609111 98609205 -90670349 + MIR SINE MIR 66 160 -102 8283 98 2 5 chr6 98609211 98611182 -90668372 + L1PA7 LINE L1 4188 6161 0 23 54 0 0 chr6 98611303 98611340 -90668214 + AT_rich Low_complexity Low_complexity 1 37 0 1781 152 18 18 chr6 98611341 98611676 -90667878 - L1PB3 LINE L1 -2 6152 5818 286 315 42 12 chr6 98611690 98611855 -90667699 - L1M4 LINE L1 -2607 3539 3370 39618 55 1 0 chr6 98611887 98617907 -90661647 - L1PA4 LINE L1 -2 6153 129 1925 179 50 33 chr6 98618204 98618510 -90661044 + MLT2C2 LTR ERVL 3 319 -145 2516 47 3 0 chr6 98618510 98618809 -90660745 - AluY SINE Alu -11 300 1 1925 179 50 33 chr6 98618809 98618922 -90660632 + MLT2C2 LTR ERVL 319 429 -35 249 114 23 0 chr6 98618970 98619014 -90660540 + MLT2C2 LTR ERVL 476 520 0 1505 202 6 39 chr6 98619519 98619880 -90659674 - MLT1A2 LTR MaLR -13 361 13 225 0 0 0 chr6 98620984 98621009 -90658545 + (T)n Simple_repeat Simple_repeat 1 25 0 258 266 45 19 chr6 98621675 98621829 -90657725 + MER103 DNA DNA 2 159 -7 180 0 0 0 chr6 98621831 98621851 -90657703 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 335 102 0 0 chr6 98622191 98622240 -90657314 - L1P LINE L1 -6095 51 3 1487 84 49 0 chr6 98622240 98622465 -90657089 - L1PB3 LINE L1 -325 5829 5594 2040 126 0 0 chr6 98622518 98622795 -90656759 + AluY SINE Alu 21 297 -14 238 295 98 36 chr6 98623303 98623415 -90656139 - L2 LINE L2 -8 3264 3146 786 311 97 3 chr6 98623586 98623937 -90655617 - MLT1J2 LTR MaLR 0 450 67 5979 176 27 30 chr6 98625027 98626725 -90652829 - L1P5 LINE L1 -591 5565 3881 22 56 0 0 chr6 98626831 98626867 -90652687 + AT_rich Low_complexity Low_complexity 1 36 0 352 350 49 0 chr6 98627689 98627812 -90651742 - HAL1 LINE L1 -1901 606 478 1088 186 10 88 chr6 98627848 98628144 -90651410 + MER58 DNA MER1_type 2 274 -67 441 178 22 0 chr6 98628142 98628232 -90651322 + MER58 DNA MER1_type 2329 2420 0 * 866 180 0 0 chr6 98628414 98628553 -90651001 + AluJb SINE Alu 169 307 -5 603 238 95 18 chr6 98628631 98628799 -90650755 - MIR SINE MIR -79 183 3 819 241 0 0 chr6 98629048 98629214 -90650340 - FRAM SINE Alu 0 166 1 2387 105 0 3 chr6 98629388 98629702 -90649852 + AluSq SINE Alu 1 313 0 252 335 168 43 chr6 98631170 98631826 -90647728 + L2 LINE L2 1968 2705 -609 329 353 42 104 chr6 98631846 98632328 -90647226 + L2 LINE L2 2818 3269 -3 219 344 0 0 chr6 98632328 98632418 -90647136 - L2 LINE L2 -1353 1961 1872 284 164 0 0 chr6 98633340 98633395 -90646159 - MLT2D LTR ERVL -2 518 464 301 203 27 14 chr6 98633407 98633481 -90646073 - L1MC4 LINE L1 -1352 6690 6616 1698 156 72 12 chr6 98633483 98633816 -90645738 - MLT2D LTR ERVL -56 358 6 227 281 151 20 chr6 98635060 98635206 -90644348 + LTR33A LTR ERVL 317 481 -42 1016 165 18 19 chr6 98635510 98635750 -90643804 - LTR12 LTR ERV1 -246 468 181 1193 304 41 26 chr6 98635911 98636791 -90642763 - HERV17 LTR ERV1 0 8626 7511 2749 241 14 12 chr6 98637034 98637691 -90641863 - HERV17 LTR ERV1 -6259 2367 1710 263 261 0 0 chr6 98637863 98637928 -90641626 - HERV17 LTR ERV1 -7310 947 883 1455 235 25 40 chr6 98638290 98638737 -90640817 - HERV17 LTR ERV1 -8170 456 17 539 167 25 25 chr6 98638751 98638878 -90640676 - LTR12 LTR ERV1 -131 583 354 235 246 29 0 chr6 98638883 98638952 -90640602 - LTR30 LTR ERV1 -108 614 544 2018 125 10 3 chr6 98639803 98640100 -90639454 - AluSg SINE Alu -11 299 1 604 111 7 146 chr6 98640558 98640702 -90638852 + L1PA15-16 LINE L1 21 144 -6705 * 4005 162 23 19 chr6 98640700 98641448 -90638106 + L1PA15-16 LINE L1 1126 1876 -4973 1654 121 8 77 chr6 98641457 98641828 -90637726 - MER4A LTR ERV1 0 664 261 268 89 22 22 chr6 98641828 98641873 -90637681 - MER4A LTR ERV1 -566 98 54 5746 190 38 23 chr6 98641902 98643843 -90635711 + L1PA15-16 LINE L1 1884 3861 -2988 5601 235 11 24 chr6 98643845 98645692 -90633862 - L1PA15-16 LINE L1 -5461 1388 16 2491 222 60 14 chr6 98645713 98646446 -90633108 - L1M2 LINE L1 -3112 4453 3687 1903 174 111 3 chr6 98646455 98646841 -90632713 - MSTA LTR MaLR 0 428 1 1796 169 36 6 chr6 98646841 98647197 -90632357 - MSTA-int LTR MaLR 0 1651 1285 746 260 109 14 chr6 98647200 98647485 -90632069 - MLT2B3 LTR ERVL -242 312 1 774 267 87 47 chr6 98647526 98648102 -90631452 - L1 LINE L1 -3960 3605 3007 * 33864 46 1 0 chr6 98648101 98653331 -90626223 - L1PA2 LINE L1 0 6155 923 372 83 17 0 chr6 98653432 98653492 -90626062 + L1P LINE L1 5315 5375 -780 2296 267 60 8 chr6 98653515 98654495 -90625059 - L1M2 LINE L1 -4241 3325 2295 676 186 36 52 chr6 98655360 98655554 -90624000 + L1 LINE L1 2171 2361 -3785 473 342 75 28 chr6 98656094 98656518 -90623036 - L1M2 LINE L1 -5696 1800 1357 2285 92 3 0 chr6 98656845 98657140 -90622414 - AluY SINE Alu -15 296 1 21 26 0 26 chr6 98657148 98657168 -90622386 + AT_rich Low_complexity Low_complexity 1 21 -17 1681 192 3 10 chr6 98657168 98657459 -90622095 - AluJo SINE Alu -23 289 1 21 26 0 26 chr6 98657459 98657477 -90622077 + AT_rich Low_complexity Low_complexity 21 38 0 368 279 0 12 chr6 98657883 98657969 -90621585 + L2 LINE L2 3168 3252 -20 2051 110 23 19 chr6 98658344 98658653 -90620901 - AluSx SINE Alu -2 310 1 210 37 0 0 chr6 98659357 98659384 -90620170 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1409 77 30 128 chr6 98659630 98659803 -90619751 - L1MA2 LINE L1 0 6304 6116 198 0 0 0 chr6 98659803 98659825 -90619729 + (TA)n Simple_repeat Simple_repeat 1 22 0 1409 77 30 128 chr6 98659825 98659845 -90619709 - L1MA2 LINE L1 -188 6116 6096 1026 107 0 40 chr6 98659845 98659995 -90619559 - U4 snRNA snRNA -1 144 1 1409 77 30 128 chr6 98659995 98660098 -90619456 - L1MA2 LINE L1 -208 6096 6036 23 33 0 0 chr6 98660182 98660212 -90619342 + AT_rich Low_complexity Low_complexity 1 30 0 421 228 76 22 chr6 98660671 98660855 -90618699 + HAL1 LINE L1 271 464 -2043 1353 273 116 35 chr6 98661197 98662115 -90617439 - HAL1 LINE L1 -1239 1268 277 725 211 87 83 chr6 98662124 98662342 -90617212 + MER58A DNA MER1_type 1 219 -5 532 315 47 23 chr6 98662354 98662611 -90616943 - HAL1 LINE L1 -2244 263 1 249 244 244 9 chr6 98662611 98662726 -90616828 - MIR SINE MIR -96 166 25 * 320 291 107 0 chr6 98662720 98662823 -90616731 + L2 LINE L2 3188 3301 -12 1245 285 84 32 chr6 98663191 98663540 -90616014 + L2 LINE L2 1989 2379 -935 1121 188 34 0 chr6 98663540 98663748 -90615806 - MER20 DNA MER1_type -1 218 4 1245 285 84 32 chr6 98663748 98663956 -90615598 + L2 LINE L2 2379 2575 -739 405 275 15 23 chr6 98664196 98664327 -90615227 - MLT1H LTR MaLR -325 224 95 658 268 76 15 chr6 98664388 98664586 -90614968 + L2 LINE L2 2570 2779 -535 630 259 78 0 chr6 98664595 98664838 -90614716 + L1MC4a LINE L1 5867 6128 -1680 836 268 82 53 chr6 98664927 98665415 -90614139 + L1MC4 LINE L1 6379 6880 -1162 2784 89 3 0 chr6 98665488 98665869 -90613685 - L1PA5 LINE L1 -1 6153 5772 27555 20 1 0 chr6 98665881 98670086 -90609468 - L1HS LINE L1 0 6155 1949 259 176 54 27 chr6 98670261 98670335 -90609219 + MER50 LTR ERV1 165 240 -494 * 1441 143 12 78 chr6 98670318 98670640 -90608914 + MER50 LTR ERV1 433 733 -1 375 257 0 20 chr6 98670754 98670855 -90608699 + MIR SINE MIR 161 259 -3 5797 98 73 0 chr6 98671510 98672449 -90607105 - L1PA15 LINE L1 -15 6150 5198 2125 151 10 40 chr6 98673204 98673602 -90605952 + MLT1B LTR MaLR 5 390 0 1534 129 0 0 chr6 98673740 98673949 -90605605 + AluSg/x SINE Alu 96 304 -8 1807 168 34 0 chr6 98674082 98674374 -90605180 + AluJb SINE Alu 1 302 -10 2157 96 25 32 chr6 98674816 98675130 -90604424 - AluSx SINE Alu 0 312 1 21 0 0 0 chr6 98677004 98677025 -90602529 + AT_rich Low_complexity Low_complexity 1 21 0 4438 58 24 18 chr6 98677205 98678234 -90601320 + MER11A LTR ERVK 1 1266 0 246 306 62 61 chr6 98679814 98679999 -90599555 - MIR SINE MIR -56 206 23 40436 37 2 38 chr6 98680477 98686860 -90592694 - L1PA2 LINE L1 -3 6152 7 3355 244 35 74 chr6 98686873 98688352 -90591202 - L1 LINE L1 -2186 3960 2539 24 53 0 0 chr6 98688778 98688816 -90590738 + AT_rich Low_complexity Low_complexity 1 38 0 28015 124 11 56 chr6 98688817 98695239 -90584315 - L1PA7 LINE L1 -17 6137 12 7343 66 119 6 chr6 98695422 98696512 -90583042 - L1P LINE L1 -4933 1213 1 2444 85 3 0 chr6 98696884 98697189 -90582365 - AluY SINE Alu -5 306 1 267 152 0 0 chr6 98698431 98698477 -90581077 + (CCA)n Simple_repeat Simple_repeat 3 48 0 22 35 0 0 chr6 98698628 98698657 -90580897 + AT_rich Low_complexity Low_complexity 1 29 0 191 313 0 81 chr6 98699094 98699193 -90580361 + L2 LINE L2 2968 3058 -214 370 296 15 75 chr6 98699382 98699581 -90579973 + L2 LINE L2 3091 3277 -36 371 132 8 182 chr6 98699581 98699620 -90579934 + MER69 DNA AcHobo 2427 2471 -55 1986 121 6 37 chr6 98699620 98699942 -90579612 - AluSx SINE Alu 0 312 1 371 132 8 182 chr6 98699942 98700023 -90579531 + MER69 DNA AcHobo 2471 2526 0 199 246 46 31 chr6 98701069 98701134 -90578420 - MIR SINE MIR -2 260 195 2169 100 35 0 chr6 98701479 98701768 -90577786 - AluSg SINE Alu -11 299 1 7466 106 16 9 chr6 98702058 98703182 -90576372 + L1PA7 LINE L1 3382 4513 -1633 346 149 40 0 chr6 98703174 98703248 -90576306 + L1P LINE L1 3674 3750 -2396 * 281 95 0 0 chr6 98703255 98703297 -90576257 + L1P LINE L1 4864 4905 -1241 6026 91 46 0 chr6 98703297 98704886 -90574668 + L1PA7 LINE L1 4513 6148 -6 1249 147 47 105 chr6 98704950 98705208 -90574346 - AluJo SINE Alu -17 295 53 2010 131 0 0 chr6 98705485 98705793 -90573761 + AluSx SINE Alu 1 308 0 291 114 0 0 chr6 98705792 98705836 -90573718 + (CA)n Simple_repeat Simple_repeat 2 45 0 200 229 0 0 chr6 98707625 98707660 -90571894 - L3 LINE CR1 -109 1468 1434 * 471 292 41 23 chr6 98707655 98707826 -90571728 + MIR SINE MIR 28 201 -61 31 104 0 0 chr6 98708681 98708796 -90570758 + AT_rich Low_complexity Low_complexity 1 115 0 1659 173 22 4 chr6 98708800 98709078 -90570476 + AluJo SINE Alu 1 283 -29 3335 32 5 0 chr6 98709078 98709479 -90570075 + L1PA3 LINE L1 5753 6155 0 5326 151 27 22 chr6 98709518 98710901 -90568653 + L1PA16 LINE L1 4784 6157 -9 25 0 0 0 chr6 98710968 98710993 -90568561 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr6 98711165 98711193 -90568361 + AT_rich Low_complexity Low_complexity 1 28 0 205 309 24 36 chr6 98711388 98711472 -90568082 - L2 LINE L2 0 3272 3190 1419 104 33 0 chr6 98711564 98711775 -90567779 - L1PA14 LINE L1 0 6161 5944 248 273 15 0 chr6 98711880 98711946 -90567608 + CT-rich Low_complexity Low_complexity 5 71 0 2138 132 7 0 chr6 98713249 98713559 -90565995 - AluSx SINE Alu 0 312 1 517 251 144 11 chr6 98714654 98715001 -90564553 - L1ME4a LINE L1 -14 6107 5715 732 230 0 37 chr6 98715245 98715406 -90564148 - FRAM SINE Alu -27 149 1 274 248 66 36 chr6 98715414 98715551 -90564003 - L1ME4a LINE L1 -2413 5395 5255 5466 172 21 7 chr6 98715602 98717471 -90562083 - L1MA4 LINE L1 -5 6295 4394 2110 162 6 0 chr6 98717485 98717849 -90561705 - L1PB4 LINE L1 -2 6154 5789 23 68 0 0 chr6 98717858 98717902 -90561652 + AT_rich Low_complexity Low_complexity 1 44 0 1419 187 74 23 chr6 98717905 98718215 -90561339 - LTR10A LTR ERV1 -99 510 185 5380 210 15 24 chr6 98718274 98719637 -90559917 - L1PA7 LINE L1 -377 5779 4433 2384 109 3 6 chr6 98719637 98719994 -90559560 + L1PA7 LINE L1 5797 6152 -2 5380 210 15 24 chr6 98719994 98720456 -90559098 - L1PB4 LINE L1 -1723 4433 3968 2385 74 3 16 chr6 98720456 98720766 -90558788 - AluY SINE Alu -3 308 3 13828 47 14 12 chr6 98720772 98723329 -90556225 - L1PA3 LINE L1 -1 6154 3595 12215 46 3 1 chr6 98723430 98724993 -90554561 - L1PA3 LINE L1 -2793 3353 1788 9565 50 6 1 chr6 98724991 98726587 -90552967 + L1P2 LINE L1 4179 5784 -370 * 30265 52 35 4 chr6 98726587 98730526 -90549028 + L1P LINE L1 1 4063 -2083 954 181 6 0 chr6 98730529 98730700 -90548854 - MER3 DNA MER1_type -80 129 5 780 258 69 67 chr6 98730701 98731119 -90548435 + L1MC4 LINE L1 6888 7306 -736 334 151 14 27 chr6 98731226 98731299 -90548255 - L1P3 LINE L1 -6389 72 1 3000 257 64 44 chr6 98731301 98732440 -90547114 - L1M2 LINE L1 -3603 3245 2056 1351 175 76 52 chr6 98732440 98732731 -90546823 - AluJo SINE Alu -12 300 3 3000 257 64 44 chr6 98732731 98733126 -90546428 - L1M2 LINE L1 -4792 2056 1670 6311 215 44 10 chr6 98733135 98734773 -90544781 - L1M2 LINE L1 -4304 2864 1139 201 39 0 0 chr6 98734773 98734799 -90544755 + (CAG)n Simple_repeat Simple_repeat 1 26 0 6311 215 44 10 chr6 98734799 98734997 -90544557 - L1M2 LINE L1 -6029 1139 949 1787 29 0 0 chr6 98736210 98736418 -90543136 - L1PA3 LINE L1 -3 6152 5945 21 36 0 0 chr6 98736607 98736635 -90542919 + AT_rich Low_complexity Low_complexity 1 28 0 182 370 110 10 chr6 98738570 98738670 -90540884 + MIR3 SINE MIR 8 117 -91 330 331 44 16 chr6 98739299 98739547 -90540007 + L1M4 LINE L1 3370 3624 -2522 341 300 23 15 chr6 98739549 98739679 -90539875 - MLT1J LTR MaLR 0 511 381 240 314 122 26 chr6 98739712 98739868 -90539686 - MLT1J LTR MaLR -130 381 211 2420 108 0 3 chr6 98739869 98740071 -90539483 - L1PB1 LINE L1 -13 6138 5937 13495 194 82 10 chr6 98740071 98746168 -90533386 - L1MA7 LINE L1 -354 6653 138 500 250 6 88 chr6 98746208 98746368 -90533186 - MLT1J LTR MaLR -338 173 27 273 196 0 0 chr6 98746379 98746435 -90533119 + L1M4 LINE L1 3626 3681 -2465 186 43 0 0 chr6 98746562 98746585 -90532969 + (TA)n Simple_repeat Simple_repeat 1 23 0 7259 221 148 32 chr6 98747091 98749676 -90529878 - L1PA15 LINE L1 -13 6803 3546 2359 70 40 0 chr6 98749676 98749974 -90529580 - AluY SINE Alu -1 310 1 7259 221 148 32 chr6 98749974 98751314 -90528240 - L1PA15 LINE L1 -3270 3546 2363 4069 230 40 18 chr6 98752136 98753245 -90526309 - L1PA15 LINE L1 -4415 2382 1238 1206 244 64 3 chr6 98753255 98753538 -90526016 + AluJo SINE Alu 3 302 0 363 351 58 0 chr6 98753710 98753901 -90525653 - HAL1 LINE L1 0 2507 2306 13142 228 32 19 chr6 98753941 98755239 -90524315 - L1PB1 LINE L1 -5 6862 5583 533 0 45 0 chr6 98755239 98755306 -90524248 + (TTCTC)n Simple_repeat Simple_repeat 4 73 0 13142 228 32 19 chr6 98755306 98756217 -90523337 - L1PB1 LINE L1 -1284 5583 4685 5585 46 18 12 chr6 98756217 98756956 -90522598 - L1PA4 LINE L1 0 6155 5413 13142 228 32 19 chr6 98756956 98757145 -90522409 - L1PB1 LINE L1 -2182 4685 4500 210 37 0 0 chr6 98757145 98757172 -90522382 + (TTG)n Simple_repeat Simple_repeat 2 28 0 13142 228 32 19 chr6 98757172 98759401 -90520153 - L1PB1 LINE L1 -2367 4500 2156 1608 139 0 4 chr6 98759435 98759673 -90519881 + L1P3 LINE L1 1 237 -5638 * 18984 167 20 27 chr6 98759662 98763592 -90515962 + L1P3 LINE L1 786 4704 -1757 1225 135 14 27 chr6 98763580 98763802 -90515752 - L1PB1 LINE L1 -6643 220 2 * 11006 245 57 27 chr6 98763924 98764261 -90515293 - L1PB4 LINE L1 -24 6835 6509 252 0 0 0 chr6 98764261 98764289 -90515265 + (TG)n Simple_repeat Simple_repeat 2 29 0 11006 245 57 27 chr6 98764289 98770233 -90509321 - L1PB4 LINE L1 -350 6509 742 413 55 18 0 chr6 98770233 98770288 -90509266 + L1PA5 LINE L1 6081 6136 -18 680 103 9 0 chr6 98770289 98770396 -90509158 + (TA)n Simple_repeat Simple_repeat 1 108 0 11006 245 57 27 chr6 98770396 98770582 -90508972 - L1PB4 LINE L1 -6116 743 201 525 295 88 37 chr6 98771732 98771949 -90507605 - MIR SINE MIR -6 256 29 2203 79 7 0 chr6 98772059 98772350 -90507204 - L1PA7 LINE L1 0 6154 5862 2194 108 10 0 chr6 98772626 98772931 -90506623 - AluSx SINE Alu -4 308 1 703 283 30 17 chr6 98773703 98773940 -90505614 + MIR SINE MIR 8 247 -15 210 79 0 127 chr6 98773997 98774060 -90505494 + (CATAC)n Simple_repeat Simple_repeat 3 57 0 21 36 0 0 chr6 98774098 98774126 -90505428 + AT_rich Low_complexity Low_complexity 1 28 0 21492 157 24 7 chr6 98774126 98777855 -90501699 - L1MA2 LINE L1 0 7723 4059 2458 76 0 3 chr6 98777855 98778159 -90501395 - AluY SINE Alu -6 305 3 21492 157 24 7 chr6 98778159 98781988 -90497566 - L1MA2 LINE L1 -3664 4059 12 256 191 0 0 chr6 98782225 98782272 -90497282 - MER5B DNA MER1_type -5 173 127 510 43 0 160 chr6 98782672 98782766 -90496788 + MADE1 DNA Mariner 2 80 0 1176 235 141 35 chr6 98782796 98783201 -90496353 + MLT1C LTR MaLR 20 467 0 183 339 69 62 chr6 98783259 98783389 -90496165 + L2 LINE L2 2763 2893 -421 241 404 56 12 chr6 98783889 98784050 -90495504 + MIR3 SINE MIR 19 186 -22 2285 87 10 7 chr6 98785371 98785670 -90493884 + AluSp SINE Alu 1 300 -13 210 37 0 0 chr6 98785818 98785845 -90493709 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2118 155 29 73 chr6 98786012 98786464 -90493090 + MSTB1 LTR MaLR 1 432 0 2697 132 19 14 chr6 98786631 98787057 -90492497 + MSTA LTR MaLR 1 428 0 346 311 39 0 chr6 98787622 98787725 -90491829 - L2 LINE L2 0 3272 3166 1989 147 37 65 chr6 98788683 98789084 -90490470 - MLT1B LTR MaLR 0 390 1 773 255 73 49 chr6 98789726 98789973 -90489581 - MIR SINE MIR -7 255 3 663 312 54 13 chr6 98790149 98790447 -90489107 + L2 LINE L2 1729 2038 -1276 340 242 0 0 chr6 98790443 98790509 -90489045 + L2 LINE L2 3246 3311 -2 * 586 308 36 40 chr6 98790511 98790764 -90488790 + L2 LINE L2 2810 3061 -252 701 318 86 28 chr6 98791097 98791493 -90488061 + LTR16A LTR ERVL 14 432 -18 477 282 45 45 chr6 98791852 98792054 -90487500 + L2 LINE L2 3107 3308 -5 293 293 107 43 chr6 98792393 98792533 -90487021 + MIR SINE MIR 48 196 -66 867 148 54 58 chr6 98792991 98793214 -90486340 + Charlie5 DNA MER1_type 2403 2624 0 4773 225 74 46 chr6 98793948 98795486 -90484068 + L1PB1 LINE L1 1 1495 -5714 10852 182 9 1 chr6 98795486 98798334 -90481220 - L1PA13 LINE L1 -19 6144 3281 4773 225 74 46 chr6 98798334 98798722 -90480832 + L1PB1 LINE L1 1495 1871 -5338 2060 219 52 59 chr6 98798722 98799280 -90480274 - MLT2B3 LTR ERVL 0 554 1 4773 225 74 46 chr6 98799280 98800012 -90479542 + L1PB1 LINE L1 1871 3256 -3953 443 194 10 31 chr6 98800046 98800144 -90479410 + FAM SINE Alu 61 156 -29 215 31 31 0 chr6 98800151 98800183 -90479371 + (CA)n Simple_repeat Simple_repeat 2 34 0 9413 204 27 13 chr6 98800187 98800538 -90479016 + L1PB1 LINE L1 3251 3595 -3613 1859 199 20 54 chr6 98800538 98800627 -90478927 - MSTC LTR MaLR 0 428 338 1903 138 3 55 chr6 98800627 98800953 -90478601 - AluSx SINE Alu -3 309 1 1859 199 20 54 chr6 98800953 98801306 -90478248 - MSTC LTR MaLR -90 338 1 9413 204 27 13 chr6 98801306 98802427 -90477127 + L1PB1 LINE L1 3595 4772 -2436 333 0 0 0 chr6 98802427 98802464 -90477090 + (CA)n Simple_repeat Simple_repeat 2 38 0 9413 204 27 13 chr6 98802464 98803322 -90476232 + L1PB1 LINE L1 4772 5616 -1592 1402 183 29 4 chr6 98803324 98803597 -90475957 + MSTA LTR MaLR 1 280 -148 5837 136 6 15 chr6 98803597 98804873 -90474681 + L1PB1 LINE L1 5948 7211 -2 1326 121 14 0 chr6 98805002 98805217 -90474337 - L1MA3 LINE L1 0 6305 6088 1664 202 33 48 chr6 98805306 98805702 -90473852 - MLT1B LTR MaLR 0 390 1 367 294 21 28 chr6 98805911 98806054 -90473500 - MIR3 SINE MIR -7 201 60 1630 108 74 0 chr6 98806367 98806625 -90472929 - L1PA14 LINE L1 -2 6159 5883 254 314 29 38 chr6 98807049 98807154 -90472400 + L2 LINE L2 3203 3306 -7 1119 181 6 138 chr6 98807516 98807865 -90471689 + MLT1D LTR MaLR 136 438 -67 1893 164 0 3 chr6 98807899 98808186 -90471368 - AluSx SINE Alu -26 286 1 379 83 4 20 chr6 98808187 98808252 -90471302 + MLT1D LTR MaLR 450 504 -1 208 216 0 0 chr6 98808729 98808766 -90470788 + (TG)n Simple_repeat Simple_repeat 2 38 0 46 0 0 0 chr6 98809092 98809138 -90470416 + AT_rich Low_complexity Low_complexity 1 46 0 428 281 134 24 chr6 98811447 98811611 -90467943 + MIR3 SINE MIR 21 202 -6 3998 108 6 43 chr6 98811672 98812301 -90467253 + LTR14B LTR ERVK 3 608 0 382 214 260 12 chr6 98812400 98812573 -90466981 + MLT1J2 LTR MaLR 15 230 -220 3772 127 60 110 chr6 98812933 98813146 -90466408 - LTR1 LTR ERV1 0 785 563 2344 110 3 0 chr6 98813146 98813456 -90466098 - AluSp SINE Alu -2 311 1 3772 127 60 110 chr6 98813456 98814068 -90465486 - LTR1 LTR ERV1 -222 563 1 15152 164 56 35 chr6 98814106 98817092 -90462462 - HUERS-P2 LTR ERV1 0 3088 42 3047 147 54 88 chr6 98817134 98817869 -90461685 - LTR1 LTR ERV1 -8 777 68 222 37 0 0 chr6 98819260 98819287 -90460267 + (CA)n Simple_repeat Simple_repeat 2 28 0 644 322 10 0 chr6 98819350 98819558 -90459996 + MER58A DNA MER1_type 5 214 -10 343 228 236 16 chr6 98820392 98820519 -90459035 + MIR3 SINE MIR 31 185 -23 1610 198 84 57 chr6 98820925 98821435 -90458119 + LTR55 LTR ERV 1 524 -24 1308 228 63 36 chr6 98821444 98821808 -90457746 + MLT1A2 LTR MaLR 1 374 0 472 257 29 29 chr6 98821990 98822130 -90457424 + L2 LINE L2 3174 3313 0 644 308 97 14 chr6 98822509 98822870 -90456684 - MLT1L LTR MaLR -224 391 1 2278 169 29 0 chr6 98822965 98823380 -90456174 + L1PA16 LINE L1 5730 6156 -10 510 238 30 0 chr6 98824193 98824294 -90455260 + MER5A DNA MER1_type 9 112 -77 3036 165 2 0 chr6 98824600 98825169 -90454385 + L1P LINE L1 4681 5250 -896 202 291 18 0 chr6 98825172 98825227 -90454327 + MER5A DNA MER1_type 68 123 -66 191 391 11 0 chr6 98825316 98825403 -90454151 - L3 LINE CR1 -61 1516 1429 234 262 131 37 chr6 98825609 98825716 -90453838 + MIR3 SINE MIR 81 197 -11 22 0 0 0 chr6 98826682 98826704 -90452850 + AT_rich Low_complexity Low_complexity 1 22 0 423 87 0 0 chr6 98827323 98827392 -90452162 + (T)n Simple_repeat Simple_repeat 1 69 0 12560 206 31 8 chr6 98827717 98832151 -90447403 + L1PB1 LINE L1 1798 6490 -377 196 0 114 0 chr6 98832151 98832195 -90447359 + (TA)n Simple_repeat Simple_repeat 1 49 0 12560 206 31 8 chr6 98832195 98832218 -90447336 + L1PB1 LINE L1 6490 6511 -356 413 77 70 21 chr6 98832218 98832361 -90447193 + (TA)n Simple_repeat Simple_repeat 2 151 0 21 71 0 0 chr6 98832366 98832408 -90447146 + AT_rich Low_complexity Low_complexity 1 42 0 271 93 53 13 chr6 98832420 98832495 -90447059 + (TATAA)n Simple_repeat Simple_repeat 5 82 0 2119 153 8 0 chr6 98832508 98832875 -90446679 + L1PB1 LINE L1 6498 6867 0 183 184 0 0 chr6 98833036 98833074 -90446480 + T-rich Low_complexity Low_complexity 1 38 0 1908 146 31 0 chr6 98833124 98833411 -90446143 + AluSx SINE Alu 1 296 -16 24 0 0 0 chr6 98833532 98833556 -90445998 + AT_rich Low_complexity Low_complexity 1 24 0 2973 102 38 2 chr6 98834233 98834804 -90444750 - L1P4 LINE L1 -441 5722 5138 605 38 0 0 chr6 98836189 98836268 -90443286 - L1PA3 LINE L1 0 6155 6077 2423 24 0 0 chr6 98836268 98836564 -90442990 + L1PA3 LINE L1 5779 6074 -81 330 344 62 16 chr6 98836991 98837119 -90442435 + L2 LINE L2 3136 3269 -3 2046 163 35 31 chr6 98837148 98837682 -90441872 + MLT2A2 LTR ERVL 1 539 -15 1200 263 87 44 chr6 98838234 98838760 -90440794 + L2 LINE L2 2774 3313 0 252 256 167 0 chr6 98839389 98839479 -90440075 - MIR SINE MIR -118 144 40 7847 75 5 3 chr6 98839608 98840613 -90438941 - LTR13 LTR ERVK 0 1007 1 182 37 37 0 chr6 98842238 98842265 -90437289 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 226 365 58 6 chr6 98842939 98843095 -90436459 - L3 LINE CR1 -151 1426 1263 27 0 0 0 chr6 98843111 98843138 -90436416 + AT_rich Low_complexity Low_complexity 1 27 0 13309 205 36 9 chr6 98843138 98849677 -90429877 - L1PB1 LINE L1 -1 6866 6 319 267 75 48 chr6 98849747 98849893 -90429661 - L1ME4a LINE L1 -9 6112 5963 211 366 97 0 chr6 98850831 98850924 -90428630 + L3 LINE CR1 1038 1139 -438 31 58 0 0 chr6 98851077 98851129 -90428425 + AT_rich Low_complexity Low_complexity 1 52 0 246 152 22 22 chr6 98851194 98851240 -90428314 - L1MEd LINE L1 -6070 49 4 251 288 38 12 chr6 98851256 98851336 -90428218 + MIR SINE MIR 110 191 -71 3517 39 2 2 chr6 98851809 98852242 -90427312 - L1PA4 LINE L1 -144 6011 5579 669 47 0 0 chr6 98852235 98852320 -90427234 + L1P LINE L1 2696 2780 -3366 * 2052 147 0 9 chr6 98852319 98852666 -90426888 - L1P LINE L1 -1958 4503 4160 * 12133 125 6 44 chr6 98852655 98854823 -90424731 - L1P3 LINE L1 -4310 2151 8 9446 160 71 6 chr6 98854952 98857146 -90422408 - L1M1 LINE L1 -743 5403 3206 586 225 100 0 chr6 98857880 98858040 -90421514 - MER5B DNA MER1_type -2 176 1 1587 80 0 9 chr6 98858819 98859045 -90420509 - L1PA8 LINE L1 -10 6162 5939 407 294 28 28 chr6 98859848 98860062 -90419492 + L1ME LINE L1 5606 5819 -302 459 318 86 15 chr6 98860778 98860976 -90418578 - MIR SINE MIR -49 213 2 2107 192 43 5 chr6 98860981 98861397 -90418157 + MSTB1 LTR MaLR 1 432 0 409 307 47 20 chr6 98862697 98862847 -90416707 - MIR SINE MIR -48 214 61 378 391 65 5 chr6 98863207 98863422 -90416132 + L3 LINE CR1 556 783 -794 190 319 110 11 chr6 98863457 98863548 -90416006 - L2 LINE L2 -19 3253 3154 3741 168 24 28 chr6 98863611 98864680 -90414874 + L1MA8 LINE L1 4963 6028 -263 1557 137 9 0 chr6 98864780 98865007 -90414547 - AluSq SINE Alu -82 231 3 24 0 0 0 chr6 98865028 98865052 -90414502 + AT_rich Low_complexity Low_complexity 1 24 0 686 333 80 37 chr6 98865053 98865455 -90414099 + L3 LINE CR1 889 1307 -270 186 43 0 0 chr6 98865649 98865672 -90413882 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 1627 187 107 16 chr6 98865949 98866312 -90413242 + MSTD LTR MaLR 1 396 0 25 0 0 0 chr6 98866753 98866778 -90412776 + AT_rich Low_complexity Low_complexity 1 25 0 274 338 105 24 chr6 98866996 98867016 -90412538 - MIR SINE MIR -13 249 232 2453 81 0 0 chr6 98867016 98867323 -90412231 - AluY SINE Alu -4 307 1 274 338 105 24 chr6 98867323 98867512 -90412042 - MIR SINE MIR -30 232 23 245 312 93 28 chr6 98868487 98868811 -90410743 + L1MEc LINE L1 1734 2078 -4318 437 208 62 8 chr6 98868903 98869033 -90410521 + L1MB7 LINE L1 4416 4552 -1594 339 20 0 100 chr6 98869035 98869085 -90410469 + THE1B LTR MaLR 1 45 -319 942 230 26 15 chr6 98869087 98869357 -90410197 + L1M4 LINE L1 1391 1663 -4879 1704 125 15 116 chr6 98869359 98869696 -90409858 + THE1B LTR MaLR 62 364 0 3440 198 67 9 chr6 98869697 98871122 -90408432 + L1MB7 LINE L1 4554 6064 -120 7943 221 51 31 chr6 98871227 98873056 -90406498 - ERVL-B1 LTR ERVL -3877 1887 22 1072 203 48 105 chr6 98873079 98873142 -90406412 - MLT2B1 LTR ERVL 0 414 349 820 94 18 12 chr6 98873142 98873312 -90406242 + (TA)n Simple_repeat Simple_repeat 2 172 0 1072 203 48 105 chr6 98873312 98873687 -90405867 - MLT2B1 LTR ERVL -65 349 1 1236 185 76 0 chr6 98873693 98873999 -90405555 - L1ME LINE L1 -620 5542 5217 220 292 0 22 chr6 98874024 98874113 -90405441 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 282 276 0 13 chr6 98874113 98874189 -90405365 - HAL1 LINE L1 -2421 86 12 355 328 60 37 chr6 98874268 98874402 -90405152 + L2 LINE L2 3117 3253 -19 874 194 71 0 chr6 98874617 98874787 -90404767 - MER58A DNA MER1_type 0 224 43 1367 77 22 0 chr6 98874788 98874971 -90404583 + L1PA8A LINE L1 5811 5997 -134 785 173 0 0 chr6 98874971 98875104 -90404450 + FRAM SINE Alu 40 172 -4 344 261 11 0 chr6 98875154 98875242 -90404312 + HAL1 LINE L1 795 883 -1624 304 276 156 47 chr6 98875458 98875498 -90404056 + HAL1 LINE L1 1146 1180 -1327 8789 32 0 0 chr6 98875498 98877329 -90402225 + L1PA3 LINE L1 4324 6155 0 304 276 156 47 chr6 98877329 98877647 -90401907 + HAL1 LINE L1 1180 1543 -964 28 0 0 0 chr6 98878231 98878259 -90401295 + AT_rich Low_complexity Low_complexity 1 28 0 232 194 104 30 chr6 98879137 98879204 -90400350 + L2 LINE L2 3201 3272 0 48 0 0 0 chr6 98879565 98879613 -90399941 + AT_rich Low_complexity Low_complexity 1 48 0 323 77 19 0 chr6 98883420 98883472 -90396082 + MER2 DNA MER2_type 149 201 -144 367 375 10 5 chr6 98883494 98883694 -90395860 - HERV16 LTR ERVL -2184 2812 2612 12741 189 38 24 chr6 98883876 98888061 -90391493 - L1MEc LINE L1 0 6372 2161 3835 122 23 2 chr6 98888087 98888696 -90390858 - L1MA2 LINE L1 0 6304 5683 1438 97 5 14 chr6 98888696 98888911 -90390643 - L1PA7 LINE L1 -3 6151 5938 23765 39 5 0 chr6 98997181 99000258 -90279296 - L1P LINE L1 -1562 4584 1494 361 278 127 48 chr6 99002062 99002314 -90277240 + MLT1J2 LTR MaLR 179 450 0 316 295 217 30 chr6 99002836 99003002 -90276552 - MIR SINE MIR -65 197 1 21 36 0 0 chr6 99003663 99003691 -90275863 + AT_rich Low_complexity Low_complexity 1 28 0 255 286 103 50 chr6 99003804 99004143 -90275411 - L1ME LINE L1 -219 5902 5546 29 28 0 0 chr6 99004163 99004199 -90275355 + AT_rich Low_complexity Low_complexity 1 36 0 17350 86 30 3 chr6 99004577 99007144 -90272410 - L1P LINE L1 -743 5403 2787 1661 155 68 0 chr6 99007246 99007530 -90272024 - AluSq SINE Alu 0 303 2 250 313 10 10 chr6 99007564 99007663 -90271891 - MER45B DNA AcHobo -693 347 249 925 281 13 4 chr6 99007734 99007965 -90271589 - MER45B DNA AcHobo -778 262 30 32 0 0 0 chr6 99008729 99008761 -90270793 + AT_rich Low_complexity Low_complexity 1 32 0 1938 129 31 94 chr6 99008830 99009211 -90270343 - THE1B LTR MaLR -7 357 1 10245 123 39 3 chr6 99009211 99010735 -90268819 - THE1B-int LTR MaLR 0 1580 1 2362 123 8 35 chr6 99010735 99011109 -90268445 - THE1B LTR MaLR 0 364 1 679 306 5 24 chr6 99011464 99011673 -90267881 + MER63A DNA MER1_type 1 205 -5 451 295 95 20 chr6 99011999 99012199 -90267355 + L3 LINE CR1 787 1001 -576 515 251 92 0 chr6 99012218 99012381 -90267173 + MER5B DNA MER1_type 1 178 0 290 254 15 15 chr6 99012451 99012518 -90267036 - MER5A DNA MER1_type -83 106 40 997 342 92 11 chr6 99012543 99013066 -90266488 + L3 LINE CR1 1007 1571 -6 273 295 47 8 chr6 99014335 99014464 -90265090 + L1M4 LINE L1 4464 4597 -1549 2182 229 43 2 chr6 99014799 99015284 -90264270 - MLT1D LTR MaLR 0 505 1 328 340 53 5 chr6 99015331 99015519 -90264035 + L1MEc LINE L1 47 243 -6153 1969 171 22 19 chr6 99015659 99016206 -90263348 + LTR8 LTR ERV1 84 691 0 1918 253 66 31 chr6 99016224 99016797 -90262757 + MLT1E LTR MaLR 1 593 0 197 226 145 0 chr6 99017593 99017655 -90261899 - MIR SINE MIR -111 151 81 293 307 180 7 chr6 99018659 99018809 -90260745 + MIR3 SINE MIR 30 205 -3 6945 56 0 0 chr6 99020444 99021539 -90258015 - L1PA7 LINE L1 0 6154 5057 1184 245 146 30 chr6 99021857 99022323 -90257231 - L1ME3 LINE L1 0 6162 5643 1443 228 24 128 chr6 99022420 99022929 -90256625 - L1MD2 LINE L1 -14 6228 5773 441 318 34 0 chr6 99023352 99023500 -90256054 - MIR SINE MIR -49 213 61 519 251 110 101 chr6 99023514 99023883 -90255671 - MLT1H1 LTR MaLR -156 386 1 521 300 46 17 chr6 99024448 99024685 -90254869 - MARNA DNA Mariner -282 304 61 1899 120 43 30 chr6 99024897 99025221 -90254333 + AluSx SINE Alu 1 312 0 252 0 0 0 chr6 99026069 99026097 -90253457 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 22 35 0 0 chr6 99027230 99027259 -90252295 + AT_rich Low_complexity Low_complexity 1 29 0 306 0 0 0 chr6 99027336 99027370 -90252184 + (TTA)n Simple_repeat Simple_repeat 3 36 0 5788 97 2 1 chr6 99027370 99028163 -90251391 - L1PA7 LINE L1 -18 6136 5343 209 349 0 0 chr6 99028452 99028535 -90251019 + A-rich Low_complexity Low_complexity 1 83 0 451 205 63 134 chr6 99028601 99028855 -90250699 + MLT1J LTR MaLR 268 503 -8 562 290 91 33 chr6 99028986 99029712 -90249842 + L1ME LINE L1 4906 5676 -755 259 247 21 0 chr6 99029816 99029909 -90249645 + L1ME LINE L1 5725 5819 -302 486 264 27 0 chr6 99029964 99030074 -90249480 + L2 LINE L2 3200 3312 -1 322 337 66 42 chr6 99030778 99030944 -90248610 + L2 LINE L2 3103 3272 0 293 274 29 103 chr6 99032034 99032209 -90247345 + MIR3 SINE MIR 43 204 -4 204 244 0 0 chr6 99032611 99032652 -90246902 + MIR SINE MIR 112 152 -110 1184 253 83 25 chr6 99033081 99033476 -90246078 - LTR52 LTR ERVL 0 421 4 529 254 82 45 chr6 99033905 99034125 -90245429 - MLT1F1 LTR MaLR -7 560 333 23474 120 45 31 chr6 99034310 99038748 -90240806 - MER57-int LTR ERV1 -1152 6385 1185 1418 131 8 34 chr6 99038748 99038927 -90240627 - MER57A LTR ERV1 -173 230 57 2002 137 39 36 chr6 99038927 99039286 -90240268 + THE1B LTR MaLR 1 360 -4 1418 131 8 34 chr6 99039286 99039342 -90240212 - MER57A LTR ERV1 -346 57 1 6714 171 21 8 chr6 99039363 99041183 -90238371 - L1M1 LINE L1 -521 5783 3944 284 108 0 0 chr6 99041283 99041320 -90238234 - Alu SINE Alu -263 39 3 437 178 67 44 chr6 99041323 99041413 -90238141 - MER2 DNA MER2_type -253 92 1 454 151 93 0 chr6 99041426 99041512 -90238042 - LTR40a LTR ERVL -425 94 1 2972 265 68 31 chr6 99041850 99042992 -90236562 + L2 LINE L2 1986 3172 -141 429 238 31 81 chr6 99043045 99043205 -90236349 + L2 LINE L2 3126 3277 -36 779 234 57 74 chr6 99044061 99044480 -90235074 - L1MCc LINE L1 -5988 435 24 664 279 90 88 chr6 99044619 99045064 -90234490 - MLT1J2 LTR MaLR -4 446 1 245 266 87 59 chr6 99045087 99045410 -90234144 + L1ME4a LINE L1 5772 6103 -18 187 281 42 52 chr6 99045916 99046012 -90233542 + L2 LINE L2 2627 2721 -593 235 309 36 36 chr6 99046189 99046328 -90233226 - L2 LINE L2 -459 2855 2717 21 36 0 0 chr6 99046511 99046539 -90233015 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 99046831 99046852 -90232702 + AT_rich Low_complexity Low_complexity 1 21 0 12031 197 45 26 chr6 99047321 99053820 -90225734 + L1MA3 LINE L1 93 6465 -1100 2051 177 33 28 chr6 99053820 99054182 -90225372 - THE1B LTR MaLR 0 364 1 11164 132 7 33 chr6 99054183 99055803 -90223751 - THE1B-int LTR MaLR -1 1579 1 2245 139 33 38 chr6 99055803 99056169 -90223385 - THE1B LTR MaLR 0 364 1 12031 197 45 26 chr6 99056169 99056387 -90223167 + L1MA3 LINE L1 6464 6594 -971 1927 157 0 4 chr6 99056396 99056676 -90222878 + AluSx SINE Alu 11 289 -23 5464 127 20 3 chr6 99056692 99057695 -90221859 + L1MA3 LINE L1 6571 7724 0 30831 42 6 0 chr6 99057988 99062503 -90217051 + L1PA4 LINE L1 1614 6150 -5 1917 164 39 21 chr6 99063536 99063871 -90215683 + MER7A DNA MER2_type 3 341 -5 5488 200 52 22 chr6 99063905 99064932 -90214622 + L1PA13 LINE L1 1 1057 -5730 328 273 9 64 chr6 99064938 99065048 -90214506 + L1PA13 LINE L1 1099 1202 -5585 3136 144 20 2 chr6 99065048 99065555 -90213999 - Tigger1 DNA MER2_type -1033 1385 870 3536 193 62 36 chr6 99065563 99066308 -90213246 - MER21B LTR ERV1 -99 764 1 432 146 98 12 chr6 99066308 99066386 -90213168 - MLT1A2 LTR MaLR -289 85 1 268 265 59 59 chr6 99066403 99066539 -90213015 - MLT1H LTR MaLR -32 517 382 307 335 150 10 chr6 99066823 99067023 -90212531 + L1ME3A LINE L1 5643 5870 -300 22 88 0 0 chr6 99067102 99067159 -90212395 + AT_rich Low_complexity Low_complexity 1 57 0 459 210 94 29 chr6 99067564 99067702 -90211852 + HAL1 LINE L1 2357 2503 -4 34248 97 16 9 chr6 99068007 99072900 -90206654 + L1P LINE L1 11 4933 -1213 279 252 44 69 chr6 99073381 99073540 -90206014 - HAL1b LINE L1 -684 664 510 920 202 14 46 chr6 99074287 99074505 -90205049 - MER20 DNA MER1_type -6 213 3 390 42 0 0 chr6 99075741 99075789 -90203765 + (TC)n Simple_repeat Simple_repeat 1 48 0 4753 64 2 2 chr6 99076249 99076826 -90202728 - L1PA6 LINE L1 0 6154 5578 10737 68 1 1 chr6 99076926 99078285 -90201269 - L1P LINE L1 -4505 1641 282 4294 135 104 78 chr6 99078288 99079623 -90199931 - pTR5 LTR ERV1 0 2438 743 2159 100 0 0 chr6 99079623 99079902 -90199652 - L1P LINE L1 -5861 285 7 7458 66 1 0 chr6 99080140 99081275 -90198279 + L1PA5 LINE L1 5017 6151 -3 2038 163 3 45 chr6 99081275 99081655 -90197899 - MSTA LTR MaLR -64 364 1 9222 191 29 4 chr6 99081655 99083265 -90196289 - MSTA-int LTR MaLR 0 1651 2 1471 192 25 79 chr6 99083266 99083448 -90196106 - MSTA LTR MaLR 0 426 236 2304 144 22 30 chr6 99083448 99083815 -90195739 - THE1B LTR MaLR 0 364 1 11461 118 19 2 chr6 99083817 99085368 -90194186 - THE1B-int LTR MaLR -2 1578 1 2002 126 129 12 chr6 99085368 99085694 -90193860 - THE1B LTR MaLR 0 364 1 1471 192 25 79 chr6 99085694 99085980 -90193574 - MSTA LTR MaLR -189 237 1 1206 217 14 0 chr6 99085998 99086219 -90193335 + MER45B DNA AcHobo 355 578 -462 2476 198 27 4 chr6 99086219 99086733 -90192821 + MER45B DNA AcHobo 515 1040 0 1676 205 16 47 chr6 99087928 99088309 -90191245 + MLT1A2 LTR MaLR 1 369 -5 286 317 77 0 chr6 99089043 99089147 -90190407 + MIR SINE MIR 40 151 -57 2295 71 3 59 chr6 99089172 99089495 -90190059 - AluY SINE Alu -6 305 1 329 200 8 42 chr6 99090084 99090204 -90189350 + T-rich Low_complexity Low_complexity 2 117 0 193 54 0 54 chr6 99090342 99090379 -90189175 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 413 210 15 29 chr6 99090394 99090599 -90188955 + CT-rich Low_complexity Low_complexity 1 202 0 208 348 87 26 chr6 99090911 99091026 -90188528 - L2 LINE L2 -17 3255 3134 258 255 108 64 chr6 99091139 99091296 -90188258 - L2 LINE L2 -213 3059 2896 214 333 11 21 chr6 99091469 99091562 -90187992 - L2 LINE L2 -619 2695 2604 484 255 213 0 chr6 99091850 99091991 -90187563 + MER5A DNA MER1_type 17 187 -2 2230 50 5 2 chr6 99092806 99092821 -90186733 + L1ME4a LINE L1 5543 5556 -565 2817 50 0 0 chr6 99092821 99093144 -90186410 - L1PA5 LINE L1 -2 6152 5830 2230 50 5 2 chr6 99093144 99093407 -90186147 + L1PA5 LINE L1 5556 5828 -293 253 197 195 3 chr6 99093832 99093954 -90185600 + MIR SINE MIR 7 148 -60 1884 348 78 37 chr6 99094170 99095938 -90183616 + ERVL LTR ERVL 2379 4219 -1545 468 291 122 44 chr6 99095971 99096267 -90183287 + ERVL LTR ERVL 4990 5347 -346 467 196 14 5 chr6 99096922 99097030 -90182524 + MER2 DNA MER2_type 1 108 -131 2400 19 0 0 chr6 99098407 99098665 -90180889 - L1PA3 LINE L1 0 6155 5898 23 0 0 0 chr6 99098749 99098772 -90180782 + AT_rich Low_complexity Low_complexity 1 23 0 417 39 0 0 chr6 99099141 99099192 -90180362 + (TTG)n Simple_repeat Simple_repeat 1 51 0 5672 184 41 9 chr6 99099740 99100783 -90178771 - L1MC1 LINE L1 -4 6329 5244 2015 139 10 3 chr6 99100783 99101092 -90178462 + AluSx SINE Alu 1 311 -1 5672 184 41 9 chr6 99101092 99101249 -90178305 - L1MC1 LINE L1 -1089 5244 5093 22 35 0 0 chr6 99101608 99101637 -90177917 + AT_rich Low_complexity Low_complexity 1 29 0 536 327 123 15 chr6 99101934 99102325 -90177229 + L2 LINE L2 723 1155 -2159 220 320 70 16 chr6 99103074 99103202 -90176352 - MIR SINE MIR -57 205 71 336 328 78 0 chr6 99105532 99105648 -90173906 - L2 LINE L2 0 3313 3189 228 333 26 0 chr6 99105701 99105779 -90173775 + MIR SINE MIR 22 101 -161 214 338 48 35 chr6 99105958 99106103 -90173451 + MIR SINE MIR 116 262 0 278 325 61 48 chr6 99106212 99106443 -90173111 + L2 LINE L2 2628 2861 -453 358 182 127 18 chr6 99106448 99106558 -90172996 + MER119 DNA MER1_type 462 583 0 200 33 0 33 chr6 99107431 99107461 -90172093 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 212 244 0 0 chr6 99107592 99107637 -90171917 + CT-rich Low_complexity Low_complexity 2 46 0 1222 166 30 13 chr6 99108073 99108308 -90171246 - LTR58 LTR ERV1 0 679 441 229 244 26 0 chr6 99108300 99108378 -90171176 - LTR43 LTR ERV1 -323 279 200 * 1072 137 86 0 chr6 99108351 99108548 -90171006 - LTR58 LTR ERV1 -299 380 167 388 212 35 0 chr6 99108648 99108733 -90170821 - AluJ/FLAM SINE Alu -214 88 1 184 193 0 35 chr6 99109912 99109969 -90169585 + CT-rich Low_complexity Low_complexity 1 55 0 504 152 11 0 chr6 99110663 99110755 -90168799 + L1MB7 LINE L1 6090 6182 -2 377 306 182 14 chr6 99111077 99111286 -90168268 + MIR SINE MIR 18 261 -1 290 305 0 0 chr6 99112169 99112251 -90167303 + CT-rich Low_complexity Low_complexity 2 83 0 1024 313 170 22 chr6 99112445 99113181 -90166373 - L2 LINE L2 -542 2772 1928 186 103 0 0 chr6 99114134 99114163 -90165391 + (T)n Simple_repeat Simple_repeat 1 29 0 222 91 0 0 chr6 99115950 99115983 -90163571 + (TG)n Simple_repeat Simple_repeat 2 34 0 249 182 0 0 chr6 99116007 99116062 -90163492 + T-rich Low_complexity Low_complexity 1 55 0 1780 142 47 20 chr6 99116814 99117110 -90162444 + 7SLRNA srpRNA srpRNA 2 305 -15 228 235 0 0 chr6 99117111 99117162 -90162392 + GA-rich Low_complexity Low_complexity 3 53 0 688 367 70 26 chr6 99117248 99118022 -90161532 - L2 LINE L2 -1635 1679 872 526 332 78 10 chr6 99118210 99118403 -90161151 + MIR SINE MIR 13 218 -44 652 235 8 0 chr6 99118403 99118535 -90161019 + FLAM_C SINE Alu 1 133 -10 190 213 0 43 chr6 99118537 99118584 -90160970 + MIR SINE MIR 218 262 0 230 281 167 26 chr6 99118647 99118761 -90160793 - MIR3 SINE MIR -64 144 15 290 219 406 16 chr6 99119401 99119529 -90160025 + MER5B DNA MER1_type 1 178 0 321 206 73 0 chr6 99119661 99119729 -90159825 + MER5A DNA MER1_type 7 79 -110 862 313 176 45 chr6 99119816 99120078 -90159476 + L3 LINE CR1 620 846 -731 2218 92 0 30 chr6 99120078 99120381 -90159173 - AluY SINE Alu -17 294 1 862 313 176 45 chr6 99120381 99120943 -90158611 + L3 LINE CR1 846 1552 -25 22 35 0 0 chr6 99121356 99121385 -90158169 + AT_rich Low_complexity Low_complexity 1 29 0 404 221 10 10 chr6 99121385 99121489 -90158065 - HAL1b LINE L1 -48 1300 1197 1550 206 46 3 chr6 99121698 99122048 -90157506 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr6 99122471 99122506 -90157048 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr6 99122574 99122598 -90156956 + (TA)n Simple_repeat Simple_repeat 1 24 0 23 33 0 0 chr6 99122635 99122665 -90156889 + AT_rich Low_complexity Low_complexity 1 30 0 1114 231 117 32 chr6 99122894 99123271 -90156283 + MLT1E2 LTR MaLR 218 626 0 203 224 0 69 chr6 99123380 99123438 -90156116 + MER5A DNA MER1_type 31 84 -105 603 214 121 0 chr6 99123442 99123582 -90155972 + MIR SINE MIR 82 238 -24 717 288 100 30 chr6 99123835 99124304 -90155250 - L1MEd LINE L1 -5283 836 335 593 259 56 36 chr6 99124325 99124576 -90154978 + L1ME3 LINE L1 4034 4289 -1857 278 171 0 122 chr6 99124584 99124666 -90154888 + MER39 LTR ERV1 1 72 -859 1112 151 45 113 chr6 99124778 99125124 -90154430 + MER39 LTR ERV1 62 470 -237 1486 207 133 85 chr6 99125125 99125304 -90154250 - MER50 LTR ERV1 0 734 565 2284 110 0 0 chr6 99125304 99125603 -90153951 + AluSg SINE Alu 1 299 -11 1486 207 133 85 chr6 99125603 99126115 -90153439 - MER50 LTR ERV1 -169 565 10 2395 169 68 43 chr6 99126121 99126724 -90152830 + MER21B LTR ERV1 317 863 0 1667 246 50 52 chr6 99126728 99127173 -90152381 + L1ME3 LINE L1 4303 4747 -1399 2410 209 98 58 chr6 99127173 99127967 -90151587 - LTR1B LTR ERV1 0 826 1 1667 246 50 52 chr6 99127967 99128388 -90151166 + L1ME3 LINE L1 4747 5167 -979 3168 214 46 23 chr6 99129145 99130031 -90149523 + L1ME3 LINE L1 5254 6160 -2 21 0 0 0 chr6 99130294 99130315 -90149239 + AT_rich Low_complexity Low_complexity 1 21 0 1462 140 88 13 chr6 99131090 99131397 -90148157 - L1MA4 LINE L1 0 6300 5971 1156 119 5 16 chr6 99131474 99131667 -90147887 - L1MA4 LINE L1 -335 5965 5775 257 214 60 0 chr6 99131668 99131752 -90147802 + (TA)n Simple_repeat Simple_repeat 1 89 0 437 289 121 0 chr6 99131752 99131942 -90147612 + LTR33 LTR ERVL 309 521 0 476 360 17 0 chr6 99132190 99132362 -90147192 + MIR3 SINE MIR 19 193 -15 23 0 0 0 chr6 99132827 99132850 -90146704 + AT_rich Low_complexity Low_complexity 1 23 0 2704 80 6 0 chr6 99133153 99133504 -90146050 + THE1A LTR MaLR 3 355 0 4897 114 4 0 chr6 99133505 99134230 -90145324 + THE1A-int LTR MaLR 2 729 -851 1919 88 4 0 chr6 99134215 99134478 -90145076 + THE1A-int LTR MaLR 1317 1580 0 * 2394 136 3 0 chr6 99134478 99134832 -90144722 + THE1A LTR MaLR 1 355 0 216 0 0 0 chr6 99134880 99134904 -90144650 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2139 259 45 24 chr6 99135103 99135720 -90143834 + MER21B LTR ERV1 126 755 -108 680 217 113 28 chr6 99136911 99137123 -90142431 - L2 LINE L2 -1 3312 3083 516 284 80 23 chr6 99137160 99137475 -90142079 + L1ME3A LINE L1 5283 5615 -547 994 223 87 31 chr6 99137507 99137830 -90141724 - MLT1I LTR MaLR -10 399 59 350 293 81 0 chr6 99137970 99138144 -90141410 + L1ME3A LINE L1 5743 5930 -240 24 32 0 0 chr6 99138286 99138317 -90141237 + AT_rich Low_complexity Low_complexity 1 31 0 207 0 0 0 chr6 99138317 99138340 -90141214 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1087 172 9 21 chr6 99138344 99138590 -90140964 - MLT1A1 LTR MaLR -29 345 99 253 163 0 0 chr6 99138590 99138633 -90140921 + MER39 LTR ERV1 1 43 -664 613 214 234 15 chr6 99138662 99139061 -90140493 + LTR48 LTR ERV1 157 529 -66 2514 96 133 2 chr6 99139061 99139459 -90140095 + LTR7 LTR ERV1 1 450 0 294 265 98 29 chr6 99139551 99139653 -90139901 - MLT1A1 LTR MaLR -278 112 4 1652 139 182 19 chr6 99140121 99140489 -90139065 + MSTA LTR MaLR 1 428 0 406 197 340 7 chr6 99140604 99140751 -90138803 + LTR59 LTR ERV1 1 196 -401 1233 244 96 27 chr6 99140789 99141194 -90138360 + MER49 LTR ERV1 491 923 0 2179 131 0 0 chr6 99141727 99142017 -90137537 + AluSx SINE Alu 1 290 -22 992 192 5 11 chr6 99142022 99142428 -90137126 + GA-rich Low_complexity Low_complexity 1 403 0 586 255 161 0 chr6 99142441 99142590 -90136964 - MER5A DNA MER1_type -7 182 10 327 225 90 0 chr6 99142598 99142709 -90136845 - MLT1L LTR MaLR -53 562 442 510 290 87 26 chr6 99142812 99143043 -90136511 - MLT1L LTR MaLR -370 245 1 2132 125 3 3 chr6 99143312 99143617 -90135937 + AluSc SINE Alu 1 305 -4 525 324 72 14 chr6 99144119 99144341 -90135213 - MIR SINE MIR 0 262 28 1837 136 83 6 chr6 99145043 99145381 -90134173 + THE1B LTR MaLR 1 364 0 8843 123 53 33 chr6 99145381 99145686 -90133868 + THE1B-int LTR MaLR 1 298 -1282 5776 74 0 0 chr6 99145686 99146445 -90133109 + L1PA8 LINE L1 5412 6170 -2 8843 123 53 33 chr6 99146445 99147688 -90131866 + THE1B-int LTR MaLR 298 1580 0 1984 142 61 9 chr6 99147688 99148034 -90131520 + THE1B LTR MaLR 1 364 0 537 282 98 6 chr6 99148055 99148229 -90131325 - L2 LINE L2 -1 3312 3123 967 229 138 48 chr6 99148236 99148772 -90130782 - MER34C LTR ERV1 -1 584 1 259 167 0 21 chr6 99148805 99148853 -90130701 - L2 LINE L2 -267 3046 3000 2024 146 0 0 chr6 99149894 99150181 -90129373 - AluSg SINE Alu -23 287 1 2225 103 13 7 chr6 99150214 99150515 -90129039 - AluSg SINE Alu -7 303 1 1455 178 101 0 chr6 99150515 99150852 -90128702 - LTR48 LTR ERV1 -84 703 333 597 137 10 0 chr6 99150840 99150942 -90128612 + MER57A LTR ERV1 295 397 -6 * 4183 173 28 29 chr6 99150946 99151795 -90127759 + MER31-int LTR ERV1 1 848 -6689 251 244 39 26 chr6 99151891 99151969 -90127585 + MER31-int LTR ERV1 2552 2630 -3701 356 189 40 0 chr6 99152018 99152092 -90127462 + MER34C LTR ERV1 149 225 -360 326 231 0 66 chr6 99152158 99152330 -90127224 + MER31-int LTR ERV1 1098 1199 -3672 269 219 16 0 chr6 99152497 99152561 -90126993 + MER31-int LTR ERV1 3248 3312 -3019 1699 235 145 20 chr6 99152569 99153212 -90126342 + MER50 LTR ERV1 12 734 0 397 264 0 71 chr6 99153215 99153370 -90126184 + MER31-int LTR ERV1 3312 3455 -2876 369 177 20 54 chr6 99153504 99153651 -90125903 + MER31-int LTR ERV1 1754 1895 -3041 3818 69 65 0 chr6 99153665 99154189 -90125365 + LTR6B LTR ERV1 1 558 0 19313 113 14 2 chr6 99154192 99154708 -90124846 + MER57A-int LTR ERV1 4 512 -8466 207 0 0 0 chr6 99154708 99154731 -90124823 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 19313 113 14 2 chr6 99154731 99157606 -90121948 + MER57A-int LTR ERV1 512 3444 -5534 * 29666 112 1 1 chr6 99157600 99161795 -90117759 + MER57A-int LTR ERV1 4736 8930 -48 3609 77 8 2 chr6 99161795 99162303 -90117251 + LTR6B LTR ERV1 48 558 0 391 265 46 33 chr6 99162303 99162663 -90116891 + MER57A-int LTR ERV1 1952 3090 -1938 441 200 92 8 chr6 99162677 99162807 -90116747 + MER57A-int LTR ERV1 4167 4307 -3813 839 133 0 0 chr6 99162807 99162920 -90116634 + FLAM_C SINE Alu 1 113 -30 5991 158 49 59 chr6 99162948 99163734 -90115820 + MER57A-int LTR ERV1 4409 5176 -2361 1497 181 83 0 chr6 99163734 99163891 -90115663 - AluSx SINE Alu -13 299 156 419 0 20 0 chr6 99163891 99163942 -90115612 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1497 181 83 0 chr6 99163942 99164060 -90115494 - AluSx SINE Alu -156 156 1 5991 158 49 59 chr6 99164060 99164699 -90114855 + MER57A-int LTR ERV1 5176 5820 -1717 6724 166 31 15 chr6 99165024 99166325 -90113229 + MER57A-int LTR ERV1 5825 7147 -390 501 204 23 30 chr6 99166326 99166458 -90113096 + LTR54B LTR ERV1 5 135 -363 1126 192 20 35 chr6 99166458 99166713 -90112841 + MER57A-int LTR ERV1 7287 7537 0 1982 161 36 0 chr6 99166713 99167073 -90112481 + MER57A LTR ERV1 1 373 -30 1426 157 126 15 chr6 99167086 99167411 -90112143 - LTR48 LTR ERV1 -426 361 1 281 360 59 22 chr6 99167809 99168081 -90111473 + LTR16B LTR ERVL 43 324 -140 681 372 19 17 chr6 99168125 99168660 -90110894 + ERVL LTR ERVL 3258 3793 -1971 4063 123 21 39 chr6 99168688 99169261 -90110293 - MER39 LTR ERV1 -2 705 146 5349 155 30 35 chr6 99169261 99170338 -90109216 + MER11C LTR ERVK 1 1071 0 4063 123 21 39 chr6 99170338 99170480 -90109074 - MER39 LTR ERV1 -561 146 3 324 267 0 29 chr6 99171001 99171106 -90108448 + LTR16B LTR ERVL 289 390 -74 1069 223 13 33 chr6 99172448 99172749 -90106805 - LTR22A LTR ERVK 0 458 164 20814 54 7 1 chr6 99172761 99176234 -90103320 - L1PA4 LINE L1 -3 6152 2665 10528 251 23 12 chr6 99176334 99177152 -90102402 - L1PA12 LINE L1 -1381 6203 5396 2270 121 0 0 chr6 99177152 99177458 -90102096 - AluSg SINE Alu -4 306 1 10528 251 23 12 chr6 99177458 99180600 -90098954 - L1PA12 LINE L1 -2188 5396 2179 213 39 0 0 chr6 99180683 99180709 -90098845 + (TTG)n Simple_repeat Simple_repeat 2 27 0 362 280 0 0 chr6 99180816 99180916 -90098638 - L1PA12 LINE L1 -5398 2183 2084 357 360 37 31 chr6 99181037 99181518 -90098036 - L1PA12 LINE L1 -6177 1397 914 464 236 26 62 chr6 99181986 99182181 -90097373 - HAL1 LINE L1 -755 1752 1565 7126 47 0 19 chr6 99182191 99183457 -90096097 - L1PA4 LINE L1 0 6155 4898 5003 175 46 7 chr6 99183803 99185397 -90094157 + L1PA16 LINE L1 4519 6165 -1 305 261 17 104 chr6 99185413 99185528 -90094026 + L1ME3A LINE L1 5961 6065 -105 274 140 0 0 chr6 99185593 99185643 -90093911 - MLT2F LTR ERVL -2 661 612 195 162 0 0 chr6 99185643 99185680 -90093874 + (TG)n Simple_repeat Simple_repeat 2 38 0 602 245 24 36 chr6 99185876 99186087 -90093467 - MLT1E3 LTR MaLR -350 304 47 2034 140 3 13 chr6 99186570 99186877 -90092677 - AluSq SINE Alu -9 304 1 236 231 92 15 chr6 99187894 99187959 -90091595 - L2 LINE L2 0 3272 3203 268 100 67 50 chr6 99188759 99188819 -90090735 + MLT1F LTR MaLR 480 540 -2 1627 163 26 10 chr6 99190873 99191260 -90088294 + MER7A DNA MER2_type 3 340 -6 1319 37 0 6 chr6 99191407 99191570 -90087984 + L1PA4 LINE L1 5988 6149 -6 1881 172 24 0 chr6 99192413 99192703 -90086851 - AluSx SINE Alu -15 297 1 520 248 149 30 chr6 99192731 99193094 -90086460 - L1ME4a LINE L1 -2 6119 5714 1795 208 121 38 chr6 99193095 99193184 -90086370 + MLT2B1 LTR ERVL 1 81 -439 4499 87 51 6 chr6 99193184 99193816 -90085738 - PABL_A LTR ERV1 0 660 1 1795 208 121 38 chr6 99193816 99194206 -90085348 + MLT2B1 LTR ERVL 81 520 0 15835 178 29 20 chr6 99194335 99198651 -90080903 + L1M1 LINE L1 12 4629 -2936 471 265 17 24 chr6 99198652 99198946 -90080608 - AluYa5 SINE Alu 0 311 20 806 206 36 43 chr6 99199233 99199349 -90080205 - MLT1G1 LTR MaLR -346 209 125 535 89 13 0 chr6 99199349 99199428 -90080126 + MADE1 DNA Mariner 1 80 0 806 206 36 43 chr6 99199428 99199545 -90080009 - MLT1G1 LTR MaLR -430 125 9 189 94 0 0 chr6 99200039 99200071 -90079483 + (CA)n Simple_repeat Simple_repeat 1 32 0 360 257 33 27 chr6 99200271 99200454 -90079100 - L1ME4a LINE L1 -390 5731 5548 26 50 0 0 chr6 99200517 99200557 -90078997 + AT_rich Low_complexity Low_complexity 1 40 0 387 129 0 0 chr6 99200563 99200633 -90078921 + L1MA3 LINE L1 6235 6304 -1 4384 176 41 6 chr6 99201599 99202544 -90077010 + L1MB3 LINE L1 1106 2083 -4301 1472 157 79 23 chr6 99202557 99202900 -90076654 + THE1C LTR MaLR 14 375 0 1763 183 33 35 chr6 99202900 99203094 -90076460 + L1MB3 LINE L1 2077 2270 -4112 2346 107 3 3 chr6 99203094 99203402 -90076152 + AluSq SINE Alu 1 308 -5 1763 183 33 35 chr6 99203402 99204090 -90075464 + L1MB3 LINE L1 2270 2964 -3418 * 2550 184 27 0 chr6 99204089 99204610 -90074944 + L1MB3 LINE L1 5728 6262 -157 866 226 29 55 chr6 99204611 99204885 -90074669 + MLT1A1 LTR MaLR 4 270 -95 961 151 92 0 chr6 99204887 99205072 -90074482 - MSTB LTR MaLR 0 426 225 1658 198 30 43 chr6 99205074 99205443 -90074111 + THE1B LTR MaLR 1 364 0 8623 127 19 4 chr6 99205444 99207003 -90072551 + THE1B-int LTR MaLR 2 1580 0 1916 151 33 36 chr6 99207003 99207340 -90072214 + THE1B LTR MaLR 1 336 -28 10531 160 39 21 chr6 99207458 99210442 -90069112 - L1M1 LINE L1 -4375 3190 13 7843 238 55 25 chr6 99210454 99210636 -90068918 - L1 LINE L1 -1743 5424 5249 1984 141 0 7 chr6 99210636 99210919 -90068635 - AluSx SINE Alu -29 283 3 7843 238 55 25 chr6 99210919 99213677 -90065877 - L1 LINE L1 -1918 5249 2635 2371 178 34 0 chr6 99213677 99214087 -90065467 + MSTA LTR MaLR 1 424 -4 7843 238 55 25 chr6 99214087 99215142 -90064412 - L1 LINE L1 -4532 2635 1614 13039 140 5 56 chr6 99215412 99217197 -90062357 + L1PA12 LINE L1 1441 3873 -3711 5851 45 1 12 chr6 99217197 99217929 -90061625 + L1PA4 LINE L1 5432 6155 0 13039 140 5 56 chr6 99217929 99218639 -90060915 + L1PA12 LINE L1 3873 4618 -2966 36434 83 6 4 chr6 99218739 99223684 -90055870 - L1P LINE L1 -1193 4953 2 238 70 42 0 chr6 99223684 99223732 -90055822 + MSTB1 LTR MaLR 354 400 -28 2729 19 7 0 chr6 99223877 99224186 -90055368 - AluYa5 SINE Alu 0 311 1 9041 160 62 15 chr6 99224196 99225397 -90054157 + L1MA3 LINE L1 3205 4348 -1957 180 0 0 0 chr6 99225397 99225417 -90054137 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 9041 160 62 15 chr6 99225417 99227161 -90052393 + L1MA3 LINE L1 4348 6297 -8 365 281 85 55 chr6 99227259 99227587 -90051967 + L1ME LINE L1 5338 5675 -487 220 186 23 0 chr6 99228079 99228122 -90051432 + MER5B DNA MER1_type 4 47 -131 1937 216 11 32 chr6 99228416 99228884 -90050670 + LTR22A LTR ERVK 1 458 0 5688 138 20 6 chr6 99228886 99229776 -90049778 + HERVK22 LTR ERVK 3 905 -5932 * 20913 120 15 1 chr6 99229769 99232909 -90046645 + HERVK22 LTR ERVK 2325 6837 0 23184 64 2 0 chr6 99232967 99235908 -90043646 + L1P LINE L1 2 2948 -3198 24317 45 6 0 chr6 99236009 99239458 -90040096 + L1P1 LINE L1 2295 5762 -393 5418 57 2 18 chr6 99239558 99240678 -90038876 - L1PA4 LINE L1 -151 6004 4895 214 148 37 0 chr6 99241777 99241831 -90037723 + (TA)n Simple_repeat Simple_repeat 2 57 0 21 0 0 0 chr6 99242123 99242144 -90037410 + AT_rich Low_complexity Low_complexity 1 21 0 522 267 194 0 chr6 99242155 99242346 -90037208 + MIR SINE MIR 13 240 -22 508 347 71 47 chr6 99242862 99243286 -90036268 - LTR67 LTR ERVL 0 557 124 283 93 0 37 chr6 99243291 99243345 -90036209 + (TCC)n Simple_repeat Simple_repeat 2 53 0 608 342 28 21 chr6 99243766 99244193 -90035361 - MERVL LTR ERVL -150 5335 4906 1302 196 134 18 chr6 99244425 99244761 -90034793 + MER63B DNA MER1_type 1 375 -61 251 54 27 0 chr6 99244968 99245005 -90034549 + (TA)n Simple_repeat Simple_repeat 1 38 0 26 30 0 0 chr6 99245013 99245046 -90034508 + AT_rich Low_complexity Low_complexity 1 33 0 472 195 23 0 chr6 99245404 99245491 -90034063 + L2 LINE L2 3184 3272 0 247 255 21 0 chr6 99246479 99246573 -90032981 + (TATATG)n Simple_repeat Simple_repeat 1 96 0 1439 255 56 67 chr6 99246641 99247226 -90032328 + MLT1E LTR MaLR 1 579 -14 392 321 8 30 chr6 99247391 99247525 -90032029 + MIR SINE MIR 32 162 -100 318 379 43 0 chr6 99247952 99248068 -90031486 + L2 LINE L2 3143 3263 -9 240 246 9 18 chr6 99248287 99248401 -90031153 + (TA)n Simple_repeat Simple_repeat 2 114 0 557 250 0 49 chr6 99249627 99249791 -90029763 - L2 LINE L2 0 3313 3158 2105 169 171 2 chr6 99249830 99250262 -90029292 - MLT1D LTR MaLR 0 505 1 263 344 112 8 chr6 99250530 99250655 -90028899 - L2 LINE L2 -1 3271 3134 1752 332 52 34 chr6 99250714 99251303 -90028251 - L2 LINE L2 -376 2938 2324 2352 135 17 96 chr6 99251303 99251372 -90028182 - MSTA LTR MaLR -4 424 351 1601 181 16 29 chr6 99251372 99251681 -90027873 + AluJb SINE Alu 3 307 -5 2352 135 17 96 chr6 99251681 99252071 -90027483 - MSTA LTR MaLR -77 351 1 1752 332 52 34 chr6 99252071 99252432 -90027122 - L2 LINE L2 -990 2324 1971 1113 263 100 9 chr6 99252581 99253047 -90026507 + MER90 LTR ERV1 67 614 0 1274 172 32 124 chr6 99253499 99253837 -90025717 - L1MD3 LINE L1 -263 7732 7426 430 259 19 0 chr6 99253839 99253947 -90025607 - MLT1F1 LTR MaLR -420 147 38 371 221 7 76 chr6 99253949 99254094 -90025460 - L1MD3 LINE L1 -877 7118 6984 * 1132 190 35 0 chr6 99254093 99254351 -90025203 - L1PA15 LINE L1 -775 5371 5105 4623 168 6 9 chr6 99254359 99255156 -90024398 + L1PA15 LINE L1 5371 6165 0 4115 135 18 6 chr6 99255168 99255835 -90023719 + L1PA16 LINE L1 5485 6159 -7 3629 231 57 84 chr6 99255836 99257172 -90022382 - L1MC4 LINE L1 -1019 7092 5801 825 213 50 0 chr6 99257172 99257332 -90022222 - FAM SINE Alu -7 168 1 3629 231 57 84 chr6 99257332 99257537 -90022017 - L1MC4 LINE L1 -2310 5801 5592 2735 234 37 55 chr6 99257535 99257624 -90021930 - L1MC4 LINE L1 -1100 5115 5026 * 227 31 31 0 chr6 99257624 99257656 -90021898 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 2735 234 37 55 chr6 99257656 99257860 -90021694 - L1MC4 LINE L1 -1189 5026 4820 2354 93 0 0 chr6 99257860 99258161 -90021393 - AluY SINE Alu -5 306 6 2735 234 37 55 chr6 99258161 99258920 -90020634 - L1MC4 LINE L1 -1395 4820 4081 1591 214 3 3 chr6 99258986 99259280 -90020274 + AluJb SINE Alu 1 294 -18 1122 238 0 4 chr6 99259293 99259528 -90020026 + AluJo SINE Alu 49 282 -30 483 272 14 5 chr6 99259577 99259786 -90019768 - L1MC4 LINE L1 -6094 302 45 2604 130 54 4 chr6 99259790 99260253 -90019301 - LTR19A LTR ERV1 0 486 1 2105 120 3 7 chr6 99260453 99260752 -90018802 + AluSg SINE Alu 1 298 -12 388 358 0 7 chr6 99261174 99261325 -90018229 + MLT1K LTR MaLR 329 478 -110 2695 133 35 5 chr6 99261339 99261766 -90017788 + MER4E LTR ERV1 1 440 -339 9951 68 68 1 chr6 99261766 99263125 -90016429 - L1P LINE L1 -3840 2306 858 7032 45 5 0 chr6 99263121 99264226 -90015328 + L1PA5 LINE L1 5015 6122 -32 * 216 0 0 0 chr6 99264229 99264253 -90015301 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2478 66 3 74 chr6 99264253 99264632 -90014922 + MER4E LTR ERV1 415 766 0 276 204 80 23 chr6 99264632 99264720 -90014834 + MLT1K LTR MaLR 496 588 0 1948 109 4 0 chr6 99265051 99265316 -90014238 - AluSc SINE Alu -5 304 39 231 88 0 0 chr6 99266142 99266176 -90013378 + (CA)n Simple_repeat Simple_repeat 2 35 0 924 223 6 0 chr6 99266387 99266562 -90012992 + MER45A DNA AcHobo 3 178 0 244 274 80 53 chr6 99266851 99266964 -90012590 - L2 LINE L2 -35 3237 3122 338 369 34 22 chr6 99267444 99267623 -90011931 + MIR3 SINE MIR 25 205 -3 25 0 0 0 chr6 99267835 99267860 -90011694 + AT_rich Low_complexity Low_complexity 1 25 0 188 135 27 0 chr6 99267904 99267941 -90011613 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 219 114 0 0 chr6 99268050 99268085 -90011469 + (TC)n Simple_repeat Simple_repeat 1 35 0 730 208 73 45 chr6 99268099 99268344 -90011210 - L1ME LINE L1 -370 5751 5500 626 291 82 44 chr6 99268437 99268932 -90010622 - L1ME LINE L1 -687 5434 4918 513 323 42 16 chr6 99270460 99270652 -90008902 - MIR SINE MIR -3 259 63 32 26 0 0 chr6 99270949 99270988 -90008566 + AT_rich Low_complexity Low_complexity 1 39 0 342 241 13 25 chr6 99271010 99271089 -90008465 + L2 LINE L2 3233 3310 -3 33 56 0 0 chr6 99271337 99271391 -90008163 + AT_rich Low_complexity Low_complexity 1 54 0 423 0 0 0 chr6 99273120 99273167 -90006387 + (TG)n Simple_repeat Simple_repeat 1 47 0 318 26 0 0 chr6 99273169 99273208 -90006346 + (GA)n Simple_repeat Simple_repeat 2 40 0 236 303 67 42 chr6 99273768 99273869 -90005685 - MIR SINE MIR -12 250 142 2077 134 0 7 chr6 99273869 99274168 -90005386 - AluSx SINE Alu -15 297 1 236 303 67 42 chr6 99274168 99274231 -90005323 - MIR SINE MIR -120 142 82 477 243 36 0 chr6 99274316 99274427 -90005127 - MIR3 SINE MIR -5 203 89 244 182 18 18 chr6 99274588 99274643 -90004911 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 10712 184 13 14 chr6 99274644 99277936 -90001618 - L1PB3 LINE L1 -5 6149 2868 898 165 109 130 chr6 99277933 99278272 -90001282 + L1MC3 LINE L1 6766 7097 -688 * 240 261 11 33 chr6 99278272 99278364 -90001190 + MLT1F1 LTR MaLR 35 124 -443 3013 157 12 52 chr6 99278367 99278965 -90000589 + L1MC3 LINE L1 7192 7765 -20 29 51 4 0 chr6 99279059 99279151 -90000403 + AT_rich Low_complexity Low_complexity 1 57 0 696 293 32 36 chr6 99280916 99281165 -89998389 - MIR SINE MIR 0 262 15 42784 49 3 1 chr6 99281174 99287319 -89992235 + L1PA3 LINE L1 3 6155 0 226 209 0 0 chr6 99287582 99287625 -89991929 + AluJ/monomer SINE Alu 1 43 -260 219 36 0 0 chr6 99287634 99287662 -89991892 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2581 104 8 0 chr6 99287670 99288045 -89991509 - L1PB1 LINE L1 -5 6862 6485 * 8396 45 0 4 chr6 99288038 99289856 -89989698 - L1PA5 LINE L1 -5 6149 4336 11093 191 15 54 chr6 99289862 99291212 -89988342 - L1PB1 LINE L1 -376 6491 5090 203 0 0 36 chr6 99291212 99291240 -89988314 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 11093 191 15 54 chr6 99291240 99292456 -89987098 - L1PB1 LINE L1 -1777 5090 4096 192 40 0 0 chr6 99292456 99292481 -89987073 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 11093 191 15 54 chr6 99292481 99293332 -89986222 - L1PB1 LINE L1 -2771 4096 3213 1776 184 139 34 chr6 99293344 99293840 -89985714 - LTR10A LTR ERV1 -61 548 1 9479 138 89 10 chr6 99293851 99294439 -89985115 - L1PB1 LINE L1 -3656 3206 2666 1947 147 7 3 chr6 99294439 99294739 -89984815 + AluSg SINE Alu 2 302 -8 9479 138 89 10 chr6 99294739 99295618 -89983936 - L1PB1 LINE L1 -4196 2666 1857 234 62 0 0 chr6 99295618 99295650 -89983904 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 9479 138 89 10 chr6 99295650 99297027 -89982527 - L1PB1 LINE L1 -5005 1857 2 1667 170 7 18 chr6 99297027 99297304 -89982250 + AluJb SINE Alu 16 289 -23 193 250 17 67 chr6 99297419 99297479 -89982075 + L2 LINE L2 3257 3313 0 25 31 0 0 chr6 99297585 99297617 -89981937 + AT_rich Low_complexity Low_complexity 1 32 0 2270 104 7 0 chr6 99298334 99298632 -89980922 + AluSg SINE Alu 2 301 -9 1927 86 3 75 chr6 99299368 99299660 -89979894 - AluSc SINE Alu -1 308 38 414 302 39 8 chr6 99299936 99300065 -89979489 - L2 LINE L2 0 3272 3140 622 313 175 22 chr6 99300386 99300939 -89978615 - L2 LINE L2 -449 2865 2228 369 203 133 49 chr6 99302032 99302058 -89977496 - MER103 DNA DNA -8 158 136 2448 217 21 44 chr6 99302058 99302625 -89976929 + MLT2B3 LTR ERVL 1 554 0 369 203 133 49 chr6 99302625 99302741 -89976813 - MER103 DNA DNA -30 136 4 245 218 287 23 chr6 99302931 99303018 -89976536 + MIR SINE MIR 38 147 -61 681 307 32 8 chr6 99303065 99303316 -89976238 - MIR SINE MIR 0 262 6 187 263 188 12 chr6 99303885 99303965 -89975589 - L2 LINE L2 -1 3312 3219 2075 142 3 12 chr6 99304071 99304416 -89975138 + MER47A DNA MER2_type 25 366 0 537 298 24 39 chr6 99304795 99305050 -89974504 - L2 LINE L2 -142 3171 2921 406 329 73 0 chr6 99305160 99305324 -89974230 - MIR3 SINE MIR -2 206 31 596 282 63 29 chr6 99305802 99306209 -89973345 + L1MC/D LINE L1 5217 5632 -744 352 156 0 111 chr6 99306231 99306321 -89973233 - L2 LINE L2 0 3313 3234 1877 154 24 0 chr6 99306632 99306924 -89972630 + AluSx SINE Alu 1 299 -13 210 171 0 0 chr6 99307051 99307092 -89972462 + GA-rich Low_complexity Low_complexity 2 42 0 21 36 0 0 chr6 99308969 99308997 -89970557 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 99309811 99309833 -89969721 + AT_rich Low_complexity Low_complexity 1 22 0 2072 83 36 24 chr6 99309855 99310248 -89969306 - LTR7 LTR ERV1 -8 442 1 2312 94 48 0 chr6 99310248 99310620 -89968934 - HERVH LTR ERV1 0 7713 7324 1298 131 19 0 chr6 99310622 99310836 -89968718 - HERVH LTR ERV1 -1896 5817 5600 2906 143 0 2 chr6 99310837 99311452 -89968102 - HERVH LTR ERV1 -2564 5149 4488 5434 107 5 3 chr6 99311454 99312307 -89967247 - HERVH LTR ERV1 -3720 3993 3140 * 14277 109 17 15 chr6 99312286 99315089 -89964465 - HERVH LTR ERV1 -4718 2995 1 2203 94 15 22 chr6 99315098 99315499 -89964055 - LTR7 LTR ERV1 -9 441 1 1048 281 56 2 chr6 99315980 99316393 -89963161 - L1ME3A LINE L1 -208 5962 5528 2067 110 0 17 chr6 99317038 99317175 -89962379 + AluSx SINE Alu 1 139 -173 2353 70 0 22 chr6 99317175 99317488 -89962066 + AluY SINE Alu 1 306 -5 2067 110 0 17 chr6 99317488 99317642 -89961912 + AluSx SINE Alu 139 287 -25 28 0 0 0 chr6 99317644 99317672 -89961882 + AT_rich Low_complexity Low_complexity 1 28 0 5327 128 45 14 chr6 99317689 99318955 -89960599 + L1MA8 LINE L1 4980 6287 -4 21 57 0 0 chr6 99320533 99320568 -89958986 + AT_rich Low_complexity Low_complexity 1 35 0 431 277 58 137 chr6 99320628 99321301 -89958253 + L2 LINE L2 2667 3269 -3 2602 130 57 63 chr6 99321316 99321809 -89957745 - LTR2B LTR ERV1 0 490 1 2088 52 21 14 chr6 99321833 99322124 -89957430 + L1PA7 LINE L1 5841 6133 -21 198 71 0 0 chr6 99322127 99322155 -89957399 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1000 234 94 38 chr6 99322793 99323262 -89956292 + MER113 DNA MER1_type? 24 518 -3 2492 55 0 3 chr6 99323349 99323656 -89955898 + AluY SINE Alu 1 306 -5 282 73 0 0 chr6 99324354 99324395 -89955159 + (CA)n Simple_repeat Simple_repeat 1 41 0 210 143 0 0 chr6 99324814 99324849 -89954705 + (A)n Simple_repeat Simple_repeat 1 35 0 902 175 5 57 chr6 99325004 99325198 -89954356 - MER5A DNA MER1_type -2 187 4 207 425 24 24 chr6 99325466 99325593 -89953961 - MIR3 SINE MIR -81 127 1 451 266 120 25 chr6 99326129 99326287 -89953267 - MIR3 SINE MIR -13 195 23 399 289 11 37 chr6 99326877 99327064 -89952490 + L1ME LINE L1 6 187 -5883 2321 266 91 48 chr6 99327370 99327644 -89951910 + L1ME LINE L1 392 653 -5427 2400 82 0 0 chr6 99327644 99327947 -89951607 - AluY SINE Alu -8 303 1 2321 266 91 48 chr6 99327947 99329061 -89950493 + L1ME LINE L1 653 1717 -4363 309 26 0 0 chr6 99329061 99329099 -89950455 + (TA)n Simple_repeat Simple_repeat 1 38 0 279 0 0 0 chr6 99329098 99329129 -89950425 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 2321 266 91 48 chr6 99329099 99330708 -89948846 + L1ME LINE L1 1717 3255 -2825 2209 124 3 0 chr6 99330708 99331014 -89948540 + AluSg1 SINE Alu 1 307 -2 2321 266 91 48 chr6 99331014 99331204 -89948350 + L1ME LINE L1 3255 3435 -2645 402 21 0 0 chr6 99331204 99331251 -89948303 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1418 165 85 52 chr6 99331256 99331528 -89948026 - AluJo SINE Alu -30 282 2 2321 266 91 48 chr6 99331528 99331864 -89947690 + L1ME LINE L1 3438 4005 -2075 308 232 71 58 chr6 99331926 99332081 -89947473 + L1MEd LINE L1 680 836 -5283 520 265 65 14 chr6 99332109 99332388 -89947166 + L1MEd LINE L1 913 1205 -4914 26 30 0 0 chr6 99332549 99332582 -89946972 + AT_rich Low_complexity Low_complexity 1 33 0 6496 181 75 18 chr6 99332620 99335068 -89944486 - L1MA5 LINE L1 -1 7361 4675 833 230 31 65 chr6 99335066 99335327 -89944227 - L1MA5 LINE L1 -6957 252 1 * 371 293 0 24 chr6 99335335 99335458 -89944096 - MER58 DNA MER1_type -2300 120 1 378 216 36 27 chr6 99335458 99335569 -89943985 - L1M4 LINE L1 -2952 3194 3083 296 288 64 0 chr6 99335569 99335694 -89943860 - HAL1 LINE L1 -861 1646 1514 26 30 0 0 chr6 99335964 99335997 -89943557 + AT_rich Low_complexity Low_complexity 1 33 0 1762 186 81 0 chr6 99336185 99336593 -89942961 - L1MC3 LINE L1 -10 7775 7335 1011 183 4 42 chr6 99336591 99336831 -89942723 + L1MC3 LINE L1 6865 7095 -690 * 373 222 11 11 chr6 99336833 99336923 -89942631 + MLT1F1 LTR MaLR 35 124 -443 1608 217 52 0 chr6 99336965 99337311 -89942243 - MLT1A1 LTR MaLR 0 365 2 37 39 0 0 chr6 99337684 99337735 -89941819 + AT_rich Low_complexity Low_complexity 1 51 0 219 103 0 0 chr6 99339824 99339863 -89939691 + (T)n Simple_repeat Simple_repeat 1 39 0 269 250 34 88 chr6 99341262 99341410 -89938144 + MLT1K LTR MaLR 382 521 -67 397 316 52 26 chr6 99341662 99341855 -89937699 + MIR SINE MIR 65 262 0 377 365 47 6 chr6 99342198 99342368 -89937186 + MIR SINE MIR 49 225 -37 1074 188 65 33 chr6 99342682 99343018 -89936536 + LTR37A LTR ERV1 75 421 -5 5730 108 36 7 chr6 99343598 99344634 -89934920 - L1PA13 LINE L1 -2 6161 5117 8068 207 10 10 chr6 99344645 99346723 -89932831 - L1PA12 LINE L1 -5857 1724 1 2204 117 125 13 chr6 99347000 99347385 -89932169 + MSTA LTR MaLR 1 428 0 26 30 0 0 chr6 99349681 99349714 -89929840 + AT_rich Low_complexity Low_complexity 1 33 0 1612 206 3 0 chr6 99349842 99350133 -89929421 + AluJb SINE Alu 1 292 -20 2128 170 81 0 chr6 99350154 99350548 -89929006 + MSTB LTR MaLR 1 426 0 183 392 14 14 chr6 99350646 99350720 -89928834 - MIR3 SINE MIR -24 184 111 255 202 12 60 chr6 99351130 99351214 -89928340 + GA-rich Low_complexity Low_complexity 5 84 0 213 200 0 55 chr6 99352153 99352208 -89927346 + CT-rich Low_complexity Low_complexity 3 54 0 259 275 117 8 chr6 99353507 99353627 -89925927 + MLT1J LTR MaLR 1 133 -378 632 263 40 20 chr6 99353752 99353950 -89925604 + MLT1J2 LTR MaLR 249 450 0 207 329 158 0 chr6 99354007 99354089 -89925465 - L2 LINE L2 -22 3291 3197 522 200 0 70 chr6 99354462 99354577 -89924977 - AluJb SINE Alu -77 235 129 860 167 0 14 chr6 99354590 99354734 -89924820 - FLAM_C SINE Alu 0 143 2 569 107 41 8 chr6 99355642 99355763 -89923791 + GA-rich Low_complexity Low_complexity 1 125 0 188 240 60 0 chr6 99356001 99356051 -89923503 - L2 LINE L2 0 3272 3220 186 43 0 0 chr6 99356581 99356604 -89922950 + (T)n Simple_repeat Simple_repeat 1 23 0 249 109 0 0 chr6 99356708 99356754 -89922800 + (T)n Simple_repeat Simple_repeat 1 46 0 7276 29 0 0 chr6 99356757 99358007 -89921547 - L1HS LINE L1 -4 6151 4902 4075 23 0 0 chr6 99358006 99358519 -89921035 + L1P LINE L1 2624 3136 -3010 * 213 39 0 0 chr6 99358725 99358751 -89920803 + (TTG)n Simple_repeat Simple_repeat 2 27 0 362 280 0 0 chr6 99358858 99358958 -89920596 - L1PA12 LINE L1 -5398 2183 2084 357 360 37 31 chr6 99359079 99359560 -89919994 - L1PA12 LINE L1 -6177 1397 914 464 236 26 62 chr6 99360029 99360224 -89919330 - HAL1 LINE L1 -755 1752 1565 21142 48 6 0 chr6 99360234 99363693 -89915861 - L1PA4 LINE L1 0 6155 2679 27782 38 2 0 chr6 99363843 99367406 -89912148 + L1P LINE L1 1280 4847 -1299 216 237 65 101 chr6 99367841 99367980 -89911574 - L2 LINE L2 -215 3057 2924 225 132 0 0 chr6 99368157 99368195 -89911359 + (CA)n Simple_repeat Simple_repeat 1 38 0 243 321 50 64 chr6 99368195 99368402 -89911152 - MIR SINE MIR -53 209 4 319 256 16 50 chr6 99368748 99368869 -89910685 - MIR SINE MIR -111 151 35 2269 124 11 32 chr6 99369008 99369379 -89910175 + THE1B LTR MaLR 1 363 -1 429 120 0 0 chr6 99370050 99370125 -89909429 - L1MD2 LINE L1 -1 6358 6284 6908 28 0 0 chr6 99370125 99370974 -89908580 - L1P LINE L1 -1331 4815 3967 2082 20 0 4 chr6 99370975 99371221 -89908333 + L1PA3 LINE L1 5911 6155 0 4414 203 62 26 chr6 99371240 99372580 -89906974 - L1MD1 LINE L1 -53 6189 4777 663 13 0 0 chr6 99372580 99372656 -89906898 + (CTATT)n Simple_repeat Simple_repeat 5 80 0 4414 203 62 26 chr6 99372656 99372992 -89906562 - L1MD1 LINE L1 -1465 4777 4454 248 262 24 36 chr6 99373050 99373134 -89906420 - MER77 LTR ERV1 -469 136 54 1559 203 58 5 chr6 99373157 99373571 -89905983 + L1MD1 LINE L1 1128 1563 -4977 1760 186 104 70 chr6 99373576 99374352 -89905202 + L1MD1 LINE L1 1680 2482 -4058 * 2800 247 63 42 chr6 99374337 99375730 -89903824 + L1MD1 LINE L1 5201 6636 0 409 230 134 64 chr6 99376467 99376643 -89902911 + L1MC5 LINE L1 6698 6937 -1105 3427 44 5 5 chr6 99376643 99377078 -89902476 + L1PA4 LINE L1 5721 6155 0 409 230 134 64 chr6 99377078 99377146 -89902408 + L1MC5 LINE L1 6937 6999 -1043 2799 159 32 63 chr6 99377381 99378058 -89901496 + L1MA9 LINE L1 5657 6312 0 350 327 133 37 chr6 99378059 99378383 -89901171 + L1MC4 LINE L1 7527 7881 -161 12460 203 20 51 chr6 99378398 99382453 -89897101 - L1PB1 LINE L1 -1 6866 2871 4622 72 117 124 chr6 99382453 99383285 -89896269 + LTR12 LTR ERV1 1 826 0 12460 203 20 51 chr6 99383285 99383986 -89895568 - L1PB1 LINE L1 -3996 2871 2150 40304 41 21 1 chr6 99383996 99390026 -89889528 - L1PA2 LINE L1 -1 6154 1 2595 107 13 9 chr6 99390026 99390486 -89889068 - L1PB1 LINE L1 -4711 2152 1691 4576 72 115 124 chr6 99390486 99391319 -89888235 - LTR12 LTR ERV1 0 826 1 57216 87 18 9 chr6 99391319 99399587 -89879967 - HERV9 LTR ERV1 0 8399 58 5208 91 133 0 chr6 99399611 99400338 -89879216 - LTR12 LTR ERV1 0 826 3 7461 124 150 48 chr6 99400338 99401024 -89878530 - L1PB1 LINE L1 -5169 1694 1079 365 141 16 0 chr6 99401024 99401088 -89878466 + MSTD LTR MaLR 330 394 -2 7461 124 150 48 chr6 99401088 99401874 -89877680 - L1PB1 LINE L1 -5784 1079 3 436 282 6 11 chr6 99402215 99402389 -89877165 - MER41B LTR ERV1 -208 427 255 1479 203 69 29 chr6 99403608 99403957 -89875597 + MLT1A1 LTR MaLR 1 363 -2 2994 170 38 2 chr6 99404005 99404528 -89875026 + MER44D DNA MER2_type 1 597 -8 433 285 54 43 chr6 99404799 99404985 -89874569 - MIR3 SINE MIR -7 201 14 495 278 17 0 chr6 99406042 99406157 -89873397 - MIR3 SINE MIR -44 164 48 2011 238 45 52 chr6 99406878 99407745 -89871809 + L1MDa LINE L1 963 1823 -4717 679 231 46 41 chr6 99407745 99407940 -89871614 + MER70A LTR ERVL 1 196 -276 482 272 12 6 chr6 99407978 99408147 -89871407 - L1M4 LINE L1 -1744 4402 4233 35073 53 3 0 chr6 99408176 99414309 -89865245 - L1PA4 LINE L1 0 6155 3 180 0 0 0 chr6 99414354 99414374 -89865180 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1093 201 93 0 chr6 99414378 99414657 -89864897 + L1MD1 LINE L1 5937 6241 -1 21 0 0 0 chr6 99415170 99415191 -89864363 + AT_rich Low_complexity Low_complexity 1 21 0 284 306 157 0 chr6 99415452 99415560 -89863994 - L2 LINE L2 -1 3312 3188 2248 113 0 3 chr6 99415570 99415905 -89863649 + L1PA13 LINE L1 5825 6158 -5 1329 218 67 32 chr6 99416056 99416459 -89863095 + L1ME1 LINE L1 5745 6161 -5 1905 257 80 54 chr6 99416526 99418346 -89861208 + L1ME LINE L1 3865 5733 -429 395 260 101 0 chr6 99418366 99418654 -89860900 + L1M4 LINE L1 2964 3280 -2866 239 258 79 0 chr6 99418844 99418933 -89860621 - MER94 DNA DNA -35 99 4 544 257 80 23 chr6 99419519 99419694 -89859860 - MLT1I LTR MaLR -10 399 215 10777 149 8 6 chr6 99419879 99422538 -89857016 - L1PA10 LINE L1 -2 7604 4934 10590 188 21 71 chr6 99422541 99424173 -89855381 - L1PA10 LINE L1 -2733 4851 3139 225 160 20 20 chr6 99424173 99424223 -89855331 - MADE1 DNA Mariner 0 80 31 10590 188 21 71 chr6 99424223 99424249 -89855305 - L1PA10 LINE L1 -4445 3139 3113 263 137 0 20 chr6 99424249 99424300 -89855254 + MADE1 DNA Mariner 31 80 0 10590 188 21 71 chr6 99424300 99425854 -89853700 - L1PA10 LINE L1 -4471 3113 1695 237 312 1 0 chr6 99425863 99425943 -89853611 - L1PA10 LINE L1 -5492 1506 292 3727 152 26 7 chr6 99426911 99427635 -89851919 - L1MA8 LINE L1 -4 6287 5550 23 0 0 0 chr6 99428499 99428522 -89851032 + AT_rich Low_complexity Low_complexity 1 23 0 1411 153 12 8 chr6 99428933 99429187 -89850367 - L1PB4 LINE L1 -24 6132 5878 1747 266 133 16 chr6 99429406 99430022 -89849532 - L2 LINE L2 -383 2931 2244 195 42 0 0 chr6 99430622 99430646 -89848908 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 615 204 0 34 chr6 99431345 99431492 -89848062 - L1MA10 LINE L1 -11 6323 6182 1191 225 115 78 chr6 99431495 99431561 -89847993 - L1ME1 LINE L1 -146 6020 5958 2039 151 23 0 chr6 99431561 99431912 -89847642 - L1PA16 LINE L1 -9 6157 5799 1191 225 115 78 chr6 99431912 99432207 -89847347 - L1ME1 LINE L1 -208 5958 5630 692 179 41 0 chr6 99432207 99432330 -89847224 - L1PA8A LINE L1 0 6131 6004 1191 225 115 78 chr6 99432330 99432496 -89847058 - L1ME1 LINE L1 -536 5630 5472 453 307 48 44 chr6 99432562 99432790 -89846764 + HAL1 LINE L1 2278 2506 -1 4064 116 39 31 chr6 99433027 99433743 -89845811 + L1MA5 LINE L1 5577 6298 -2 21 0 0 0 chr6 99433743 99433764 -89845790 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 99433806 99433829 -89845725 + AT_rich Low_complexity Low_complexity 1 23 0 569 288 80 4 chr6 99434043 99434269 -89845285 + MIR SINE MIR 20 262 0 24 85 0 0 chr6 99434314 99434373 -89845181 + AT_rich Low_complexity Low_complexity 1 59 0 702 145 48 0 chr6 99434551 99434675 -89844879 + AluSg/x SINE Alu 177 306 -3 2659 265 50 18 chr6 99434785 99435708 -89843846 - L1ME LINE L1 -5099 971 20 211 308 64 13 chr6 99436457 99436535 -89843019 - MIR SINE MIR -110 98 17 1955 146 64 14 chr6 99436622 99436979 -89842575 - THE1C LTR MaLR 0 375 1 10426 115 11 32 chr6 99436979 99438593 -89840961 - THE1C-int LTR MaLR 0 1580 1 1824 153 64 22 chr6 99438593 99438953 -89840601 - THE1C LTR MaLR 0 375 1 1565 161 39 32 chr6 99439932 99440242 -89839312 + AluJo SINE Alu 1 312 0 247 213 80 0 chr6 99441254 99441329 -89838225 + L1MC5 LINE L1 7833 7913 -48 215 317 77 10 chr6 99441896 99442000 -89837554 - L3b LINE CR1 -102 1481 1371 1579 288 157 13 chr6 99442049 99442861 -89836693 - L2 LINE L2 -2 3311 2381 21 36 0 0 chr6 99443116 99443144 -89836410 + AT_rich Low_complexity Low_complexity 1 28 0 1643 230 81 35 chr6 99444598 99445081 -89834473 - MLT1D LTR MaLR 0 505 1 2818 236 62 98 chr6 99445083 99445223 -89834331 + L1MC4 LINE L1 6010 6153 -1736 2159 107 14 0 chr6 99445223 99445513 -89834041 + AluSc SINE Alu 1 294 -15 2818 236 62 98 chr6 99445513 99446921 -89832633 + L1MC4 LINE L1 6153 7584 -305 874 166 41 0 chr6 99446938 99447107 -89832447 + L1MA9 LINE L1 5906 6081 -231 274 209 26 70 chr6 99447110 99447225 -89832329 + L1MA9 LINE L1 6181 6290 -22 543 274 31 38 chr6 99447268 99447556 -89831998 + L1MC4 LINE L1 7614 7899 -143 258 143 0 0 chr6 99447579 99447628 -89831926 + (CA)n Simple_repeat Simple_repeat 2 50 0 348 222 27 51 chr6 99447663 99447792 -89831762 + L1MC4 LINE L1 7880 7995 0 401 318 77 39 chr6 99449018 99449355 -89830199 - LTR16A LTR ERVL -5 445 96 4057 53 4 4 chr6 99449355 99450169 -89829385 + L1PA4 LINE L1 4968 5781 -373 20157 44 36 3 chr6 99450184 99456024 -89823530 + L1PA3 LINE L1 10 6152 -3 2770 53 3 0 chr6 99456034 99456431 -89823123 + L1PA4 LINE L1 5770 6167 0 3121 42 3 0 chr6 99456435 99456819 -89822735 + L1PA5 LINE L1 5770 6154 0 204 97 0 0 chr6 99456873 99456904 -89822650 + (TC)n Simple_repeat Simple_repeat 1 31 0 2351 147 14 0 chr6 99456904 99457326 -89822228 - L1MC3 LINE L1 -169 7616 7189 322 264 0 0 chr6 99457326 99457417 -89822137 - MLT1F1 LTR MaLR -442 125 35 1907 148 3 43 chr6 99457536 99457861 -89821693 + AluSx SINE Alu 1 312 0 225 307 45 0 chr6 99457876 99457964 -89821590 - LTR16A LTR ERVL -358 92 1 286 221 53 32 chr6 99458123 99458218 -89821336 - HERV16 LTR ERVL -433 5331 5235 386 396 11 11 chr6 99458351 99458634 -89820920 - HERV16 LTR ERVL -699 5065 4783 1277 310 65 36 chr6 99458874 99458936 -89820618 - HERV16 LTR ERVL -1070 4415 4356 1802 216 48 72 chr6 99458936 99459504 -89820050 - MLT2B3 LTR ERVL 0 554 1 1277 310 65 36 chr6 99459504 99460447 -89819107 - HERV16 LTR ERVL -1129 4356 3389 449 211 44 0 chr6 99460437 99460527 -89819027 - HERV16 LTR ERVL -3199 1797 1704 * 2430 305 63 15 chr6 99460568 99461616 -89817938 - HERV16 LTR ERVL -3438 1558 461 3403 164 86 19 chr6 99461837 99462631 -89816923 - MER21A LTR ERV1 0 931 28 252 77 0 0 chr6 99462631 99462670 -89816884 + (TG)n Simple_repeat Simple_repeat 2 40 0 3403 164 86 19 chr6 99462670 99462698 -89816856 - MER21A LTR ERV1 -903 28 3 262 327 39 0 chr6 99462745 99462849 -89816705 - HERV16 LTR ERVL -4888 108 1 726 299 83 20 chr6 99462903 99463251 -89816303 - LTR16A LTR ERVL -80 370 1 2283 163 23 21 chr6 99463289 99463718 -89815836 + MSTB1 LTR MaLR 1 430 -2 651 319 170 19 chr6 99464438 99465111 -89814443 + L2 LINE L2 2208 3024 -248 380 265 59 59 chr6 99465155 99465408 -89814146 + LTR33 LTR ERVL 14 266 -255 304 344 33 0 chr6 99465645 99465735 -89813819 + L2 LINE L2 3134 3226 -46 240 303 83 28 chr6 99466890 99466999 -89812555 - MIR3 SINE MIR -1 207 93 242 280 27 0 chr6 99467202 99467277 -89812277 + CT-rich Low_complexity Low_complexity 2 78 0 288 204 301 0 chr6 99467291 99467394 -89812160 - L1ME4a LINE L1 -15 6106 5973 2911 3 0 0 chr6 99468654 99468967 -89810587 + AluYb8 SINE Alu 1 313 -5 450 280 58 48 chr6 99469013 99469202 -89810352 + L2 LINE L2 3118 3308 -5 895 83 0 15 chr6 99469421 99469553 -89810001 - L1PA16 LINE L1 -227 5939 5810 1894 239 16 49 chr6 99470583 99471136 -89808418 + MLT1E2 LTR MaLR 92 626 0 1626 149 110 13 chr6 99471724 99472075 -89807479 + MLT2D LTR ERVL 1 481 -39 227 186 0 0 chr6 99472107 99472150 -89807404 - MLT2B2 LTR ERVL 0 515 473 181 242 30 45 chr6 99473081 99473147 -89806407 + L2 LINE L2 3159 3223 -90 182 373 0 0 chr6 99473631 99473690 -89805864 + L2 LINE L2 2995 3053 -219 193 203 0 141 chr6 99473788 99473852 -89805702 + L2 LINE L2 3207 3261 -11 832 163 34 27 chr6 99475039 99475186 -89804368 + FRAM SINE Alu 5 152 -24 2099 144 47 11 chr6 99477258 99477620 -89801934 + THE1C LTR MaLR 1 375 0 9578 112 33 41 chr6 99477620 99478292 -89801262 + THE1C-int LTR MaLR 1 677 -903 2146 125 24 56 chr6 99478292 99478668 -89800886 - THE1B LTR MaLR 0 364 1 9578 112 33 41 chr6 99478668 99479588 -89799966 + THE1C-int LTR MaLR 677 1580 0 2106 127 68 8 chr6 99479588 99479942 -89799612 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr6 99480089 99480117 -89799437 + AT_rich Low_complexity Low_complexity 1 28 0 230 140 0 100 chr6 99481370 99481402 -89798152 + MLT1L LTR MaLR 209 236 -379 2155 158 44 3 chr6 99481402 99481789 -89797765 - MER57A LTR ERV1 0 403 1 230 140 0 100 chr6 99481789 99481806 -89797748 + MLT1L LTR MaLR 236 253 -362 230 361 12 24 chr6 99482177 99482260 -89797294 - L2 LINE L2 -649 2665 2584 446 376 90 6 chr6 99482368 99482700 -89796854 - L2 LINE L2 -916 2398 2039 242 255 184 10 chr6 99482950 99483048 -89796506 - L2 LINE L2 -1341 1973 1859 435 365 66 8 chr6 99483161 99483402 -89796152 - MIR SINE MIR -6 256 2 21 0 0 0 chr6 99483630 99483651 -89795903 + AT_rich Low_complexity Low_complexity 1 21 0 853 122 0 0 chr6 99484356 99484479 -89795075 - AluSp/q SINE Alu -3 310 188 1861 83 0 4 chr6 99484479 99484708 -89794846 - AluSq SINE Alu -85 228 1 410 232 12 0 chr6 99486747 99486829 -89792725 + Tigger7 DNA MER2_type 1 83 -2404 838 164 0 0 chr6 99486829 99486975 -89792579 - L1P LINE L1 -2494 3652 3507 285 346 119 5 chr6 99486998 99487200 -89792354 - L2 LINE L2 -1405 1909 1685 257 184 0 0 chr6 99487210 99487259 -89792295 - L1P LINE L1 -2639 3507 3459 9091 215 7 29 chr6 99487730 99488045 -89791509 + L1P4 LINE L1 2880 3200 -2966 2339 72 7 0 chr6 99488045 99488335 -89791219 + AluY SINE Alu 1 292 -19 9091 215 7 29 chr6 99488335 99490708 -89788846 + L1P4 LINE L1 3200 5508 -658 2356 99 0 3 chr6 99490717 99491030 -89788524 + AluSq SINE Alu 1 312 -1 1216 110 22 0 chr6 99491030 99491251 -89788303 + AluSg/x SINE Alu 126 350 0 356 276 0 9 chr6 99491350 99491466 -89788088 - MER69 DNA AcHobo -380 2146 2032 1559 255 118 8 chr6 99491527 99492045 -89787509 - MER69 DNA AcHobo -651 575 1 180 245 41 0 chr6 99492304 99492353 -89787201 - L2 LINE L2 -219 3053 3003 444 19 0 0 chr6 99494023 99494076 -89785478 + (CA)n Simple_repeat Simple_repeat 1 53 0 3913 138 32 15 chr6 99494435 99495147 -89784407 + L1MC1 LINE L1 5592 6315 -18 303 230 115 18 chr6 99495181 99495294 -89784260 + L1ME4a LINE L1 5961 6084 -37 2183 100 0 10 chr6 99495357 99495648 -89783906 + AluSg SINE Alu 1 288 -22 252 214 0 0 chr6 99495651 99495707 -89783847 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 379 361 51 14 chr6 99496118 99496334 -89783220 + MIR SINE MIR 15 238 -24 398 313 110 62 chr6 99496350 99496740 -89782814 + L3 LINE CR1 557 965 -612 343 339 78 42 chr6 99496849 99497209 -89782345 + L3 LINE CR1 1203 1575 -2 432 322 81 39 chr6 99497672 99498223 -89781331 + L2 LINE L2 2703 3300 -13 234 314 39 39 chr6 99498254 99498407 -89781147 + L2 LINE L2 2543 2695 -619 1774 76 4 25 chr6 99498427 99498664 -89780890 + AluSp SINE Alu 75 306 -7 427 208 110 84 chr6 99498741 99498834 -89780720 - MIR SINE MIR -1 261 160 2170 117 0 0 chr6 99498834 99499135 -89780419 - AluSc SINE Alu 0 301 1 427 208 110 84 chr6 99499135 99499194 -89780360 - MIR SINE MIR -102 160 104 1894 163 34 20 chr6 99500445 99500801 -89778753 - MLT1A1 LTR MaLR 0 365 5 295 315 27 45 chr6 99500935 99501046 -89778508 + MER5B DNA MER1_type 70 178 0 732 196 78 4 chr6 99501054 99501213 -89778341 - MER5A DNA MER1_type 0 189 12 243 241 120 19 chr6 99501379 99501487 -89778067 + MLT1L LTR MaLR 493 611 -4 296 301 26 0 chr6 99502138 99502252 -89777302 + MLT1J LTR MaLR 110 290 -302 1094 226 120 40 chr6 99507087 99507567 -89771987 - MER39 LTR ERV1 0 707 4 292 191 59 0 chr6 99509097 99509165 -89770389 + MER103 DNA DNA 2 73 -93 459 296 116 6 chr6 99509572 99509744 -89769810 - MIR SINE MIR -15 247 57 386 235 31 0 chr6 99509845 99509943 -89769611 + MER5A DNA MER1_type 9 109 -80 406 202 150 87 chr6 99509998 99510171 -89769383 - MER5A DNA MER1_type -2 187 4 536 142 39 7 chr6 99510248 99510403 -89769151 + (TA)n Simple_repeat Simple_repeat 1 160 0 55 80 0 0 chr6 99510412 99510537 -89769017 + AT_rich Low_complexity Low_complexity 1 125 0 14374 168 17 15 chr6 99511437 99514207 -89765347 - L1MA2 LINE L1 0 7723 4959 2137 143 16 26 chr6 99514207 99514586 -89764968 - THE1C LTR MaLR 0 375 1 9832 124 22 30 chr6 99514586 99516176 -89763378 - THE1C-int LTR MaLR 0 1580 4 2152 140 10 44 chr6 99516180 99516566 -89762988 - THE1C LTR MaLR -1 374 2 14374 168 17 15 chr6 99516566 99517754 -89761800 - L1MA2 LINE L1 -2766 4957 3773 1474 177 8 8 chr6 99517754 99518047 -89761507 - AluJo SINE Alu 0 327 35 14374 168 17 15 chr6 99518047 99519961 -89759593 - L1MA2 LINE L1 -3950 3773 1838 15863 49 61 4 chr6 99569961 99572129 -89707425 - L1P LINE L1 -3851 2295 3 13907 114 8 14 chr6 99572128 99575541 -89704013 - L1P3 LINE L1 -3059 3402 2 * 5346 160 28 6 chr6 99575551 99576953 -89702601 + L1MA4 LINE L1 4855 6289 -11 2519 42 0 19 chr6 99577077 99577384 -89702170 + AluY SINE Alu 1 301 -10 1491 220 65 16 chr6 99577549 99577921 -89701633 - MLT1B LTR MaLR 0 390 1 243 282 35 35 chr6 99578116 99578201 -89701353 - MIR SINE MIR -70 192 108 186 353 69 9 chr6 99579019 99579135 -89700419 + MER5B DNA MER1_type 33 155 -23 334 106 33 2 chr6 99579343 99579400 -89700154 - L1PA7 LINE L1 -476 5678 5620 3276 78 5 9 chr6 99579400 99579846 -89699708 + L1PA7 LINE L1 5710 6154 0 426 280 161 37 chr6 99579917 99580135 -89699419 - MIR SINE MIR -10 252 8 366 348 139 27 chr6 99580147 99580607 -89698947 - L2 LINE L2 -30 3283 2745 556 336 107 107 chr6 99580806 99582364 -89697190 + L2 LINE L2 750 2307 -1007 369 212 104 78 chr6 99582378 99582571 -89696983 - MER67D LTR ERV1 -35 479 282 1352 226 85 19 chr6 99582582 99583046 -89696508 - MER67B LTR ERV1 -250 411 1 235 332 206 4 chr6 99583050 99583303 -89696251 + L2 LINE L2 2307 2610 -704 628 250 22 11 chr6 99584920 99585100 -89694454 + L1ME1 LINE L1 5586 5767 -399 845 228 47 31 chr6 99585111 99585365 -89694189 + L1ME1 LINE L1 5904 6161 -5 246 174 0 0 chr6 99585468 99585514 -89694040 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 298 207 99 27 chr6 99586371 99586482 -89693072 + MER112 DNA MER1_type 136 254 -6 336 302 65 71 chr6 99588283 99588591 -89690963 + L2 LINE L2 1970 2275 -1039 1084 314 40 35 chr6 99588597 99589189 -89690365 - L2 LINE L2 -2 3311 2712 659 297 176 63 chr6 99589190 99590067 -89689487 + L2 LINE L2 2287 3270 -2 469 340 51 10 chr6 99590352 99590549 -89689005 - MIR SINE MIR -10 252 48 256 173 19 0 chr6 99591207 99591259 -89688295 + L2 LINE L2 3261 3313 0 275 279 27 131 chr6 99591807 99591990 -89687564 - MIR SINE MIR -79 183 20 263 218 92 23 chr6 99592165 99592252 -89687302 + MIR SINE MIR 16 108 -154 189 0 0 0 chr6 99592878 99592899 -89686655 + (TTTTC)n Simple_repeat Simple_repeat 2 22 0 2137 121 0 0 chr6 99592903 99593184 -89686370 - AluSx SINE Alu -31 281 1 22 35 0 0 chr6 99593467 99593496 -89686058 + AT_rich Low_complexity Low_complexity 1 29 0 201 182 0 0 chr6 99593738 99593771 -89685783 + (TTA)n Simple_repeat Simple_repeat 2 34 0 4915 131 14 17 chr6 99594352 99595137 -89684417 + LTR39 LTR ERV1 1 783 0 343 228 126 102 chr6 99595137 99595352 -89684202 + L1ME4a LINE L1 5858 6077 -44 458 261 239 0 chr6 99595368 99595544 -89684010 - MIR SINE MIR -44 218 1 21 0 0 0 chr6 99595565 99595586 -89683968 + AT_rich Low_complexity Low_complexity 1 21 0 772 270 107 25 chr6 99596087 99596450 -89683104 - MER34 LTR ERV1 -123 419 27 252 235 97 104 chr6 99596450 99596718 -89682836 - LTR38 LTR ERV1 0 556 291 442 254 85 76 chr6 99597680 99598117 -89681437 + MLT1J1 LTR MaLR 1 409 0 200 35 35 0 chr6 99598175 99598204 -89681350 + (CA)n Simple_repeat Simple_repeat 2 31 0 671 240 34 7 chr6 99598293 99598500 -89681054 + MIR SINE MIR 1 252 -10 1311 85 30 0 chr6 99598709 99598909 -89680645 + L1MA1 LINE L1 6097 6302 0 307 239 14 0 chr6 99600707 99600778 -89678776 + MIR SINE MIR 71 142 -66 22894 38 2 0 chr6 99600938 99604526 -89675028 - L1PA3 LINE L1 0 6155 2562 240 137 0 0 chr6 99605687 99605738 -89673816 + (TG)n Simple_repeat Simple_repeat 2 52 0 556 273 224 0 chr6 99605738 99605943 -89673611 - MIR SINE MIR -10 252 2 226 303 53 53 chr6 99606000 99606208 -89673346 - L2 LINE L2 -1262 2052 1845 2692 122 17 34 chr6 99606513 99606982 -89672572 + MER65C LTR ERV1 1 461 0 182 317 59 20 chr6 99607165 99607266 -89672288 + MIR3 SINE MIR 101 205 -3 2228 120 0 0 chr6 99608046 99608345 -89671209 - AluSx SINE Alu -13 299 1 795 140 35 0 chr6 99610474 99610645 -89668909 + (TA)n Simple_repeat Simple_repeat 2 178 0 398 276 108 43 chr6 99610651 99610836 -89668718 - MLT1J LTR MaLR -312 199 3 299 279 0 25 chr6 99612296 99612375 -89667179 - MIR SINE MIR -111 97 21 221 169 97 0 chr6 99612900 99612970 -89666584 + MIR SINE MIR 92 176 -32 2840 171 69 24 chr6 99612977 99613752 -89665802 - MER21A LTR ERV1 -6 925 1 331 227 72 0 chr6 99613871 99613968 -89665586 - Charlie2a DNA MER1_type -41 2821 2718 317 157 0 0 chr6 99614002 99614053 -89665501 - Charlie2a DNA MER1_type -1229 1633 1583 435 205 47 24 chr6 99614076 99614203 -89665351 - Charlie2a DNA MER1_type -1254 1608 1479 21 0 0 0 chr6 99614345 99614366 -89665188 + AT_rich Low_complexity Low_complexity 1 21 0 898 255 38 21 chr6 99614455 99614745 -89664809 - Charlie2a DNA MER1_type -2481 301 7 269 312 96 0 chr6 99614916 99615073 -89664481 + MER117 DNA MER1_type 9 180 -17 1970 165 2 41 chr6 99616587 99617006 -89662548 - L1MA9 LINE L1 -83 6229 5827 2182 269 37 33 chr6 99617073 99617797 -89661757 + L1M3b LINE L1 1225 1951 -5545 * 2490 272 26 41 chr6 99617776 99618645 -89660909 + L1M3b LINE L1 1813 2668 -4828 271 208 0 0 chr6 99618649 99618697 -89660857 - Tigger1 DNA MER2_type 0 2418 2371 * 9971 154 22 5 chr6 99618694 99620445 -89659109 - Tigger1 DNA MER2_type -632 1786 7 730 218 40 13 chr6 99620450 99620675 -89658879 + L1M3b LINE L1 2666 2896 -4600 * 6525 43 1 0 chr6 99620673 99621540 -89658014 - L1P LINE L1 -2593 3553 2686 1827 222 27 57 chr6 99621527 99621545 -89658009 + L1M3b LINE L1 2577 2594 -4971 * 15354 28 0 0 chr6 99621545 99624138 -89655416 + L1PA3 LINE L1 3562 6155 0 1827 222 27 57 chr6 99624138 99625337 -89654217 + L1M3b LINE L1 2594 3755 -3810 1030 259 84 16 chr6 99625337 99625658 -89653896 + MER2 DNA MER2_type 2 344 0 1827 222 27 57 chr6 99625658 99625685 -89653869 + L1M3b LINE L1 3755 3781 -3784 * 16522 183 18 7 chr6 99625679 99631438 -89648116 + L1PA12 LINE L1 952 6779 -805 39782 44 1 45 chr6 99631444 99634704 -89644850 + L1PA3 LINE L1 7 2839 -3327 2252 54 0 0 chr6 99634704 99634976 -89644578 + L1PA3 LINE L1 5875 6152 -3 39782 44 1 45 chr6 99634976 99638165 -89641389 + L1PA3 LINE L1 2839 6166 0 2269 117 6 0 chr6 99638166 99638507 -89641047 + L1PA14 LINE L1 5818 6160 -1 3867 225 30 0 chr6 99638511 99639538 -89640016 + L1M3b LINE L1 3769 4826 -2739 * 23413 108 7 1 chr6 99639533 99644064 -89635490 - L1PA8 LINE L1 -3 6169 1615 2645 203 3 2 chr6 99644066 99644642 -89634912 - L1 LINE L1 -1443 4703 4127 1375 204 75 7 chr6 99644671 99644950 -89634604 - AluJo SINE Alu -14 298 1 288 346 19 0 chr6 99646186 99646293 -89633261 - L2 LINE L2 -481 2833 2725 338 276 11 0 chr6 99646532 99646619 -89632935 + MIR3 SINE MIR 115 202 -6 21 0 0 0 chr6 99646919 99646940 -89632614 + AT_rich Low_complexity Low_complexity 1 21 0 189 368 132 0 chr6 99647695 99647801 -89631753 - L2 LINE L2 0 3272 3153 265 234 21 43 chr6 99648119 99648213 -89631341 + L1MEc LINE L1 42 133 -6263 254 253 13 0 chr6 99649132 99649207 -89630347 + Charlie8 DNA MER1_type 92 167 -2250 330 26 0 0 chr6 99649492 99649531 -89630023 + (TG)n Simple_repeat Simple_repeat 1 39 0 3615 241 60 36 chr6 99649536 99651583 -89627971 + L1PBa LINE L1 3 1639 -5224 1480 218 51 5 chr6 99651600 99651995 -89627559 + L1 LINE L1 2621 3033 -3113 5916 38 1 0 chr6 99652025 99652796 -89626758 + L1P LINE L1 1965 2736 -3410 * 9093 196 23 7 chr6 99652793 99655638 -89623916 + L1PBa LINE L1 1953 4891 -1971 40286 38 21 2 chr6 99656329 99662350 -89617204 + L1PA2 LINE L1 13 6155 0 33 0 0 0 chr6 99662454 99662487 -89617067 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr6 99662623 99662646 -89616908 + (CATA)n Simple_repeat Simple_repeat 3 25 0 521 248 0 51 chr6 99662887 99663044 -89616510 - MLT1J LTR MaLR -312 199 51 22 35 0 0 chr6 99663484 99663513 -89616041 + AT_rich Low_complexity Low_complexity 1 29 0 608 116 0 0 chr6 99663764 99663850 -89615704 + AluS SINE Alu 1 86 -227 412 186 14 0 chr6 99663858 99663928 -89615626 - AluJb SINE Alu -142 170 100 23 0 0 0 chr6 99664123 99664146 -89615408 + AT_rich Low_complexity Low_complexity 1 23 0 468 264 0 0 chr6 99664722 99664828 -89614726 - MER81 DNA DNA -7 107 2 858 209 13 60 chr6 99665262 99665496 -89614058 + L1MC3 LINE L1 6504 6726 -1059 458 189 101 14 chr6 99665494 99665642 -89613912 + L1MD3 LINE L1 6889 7049 -736 * 576 299 97 36 chr6 99666120 99666731 -89612823 + HAL1 LINE L1 1251 1898 -609 387 171 0 0 chr6 99666958 99667034 -89612520 + (TA)n Simple_repeat Simple_repeat 2 77 0 246 324 11 28 chr6 99667043 99667222 -89612332 + HAL1 LINE L1 2217 2392 -115 35 54 0 0 chr6 99667282 99667338 -89612216 + AT_rich Low_complexity Low_complexity 1 56 0 329 284 89 37 chr6 99667525 99667715 -89611839 - L2 LINE L2 -5 3308 3109 274 239 9 28 chr6 99667826 99667935 -89611619 - L1MC4 LINE L1 -17 8025 7919 211 192 26 0 chr6 99667935 99668013 -89611541 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 302 279 58 39 chr6 99668021 99668125 -89611429 - L1MC4 LINE L1 -134 7908 7803 743 219 0 0 chr6 99668125 99668294 -89611260 + L1 LINE L1 3692 3860 -2286 * 5189 178 23 4 chr6 99668287 99669091 -89610463 + L1PA15 LINE L1 4491 5278 -887 2504 53 0 28 chr6 99669091 99669411 -89610143 + AluY SINE Alu 1 311 0 5189 178 23 4 chr6 99669411 99670232 -89609322 + L1PA15 LINE L1 5278 6149 -16 3836 143 20 18 chr6 99670245 99670932 -89608622 + L1PA16 LINE L1 5476 6164 -2 190 293 67 13 chr6 99671095 99671170 -89608384 + L3 LINE CR1 622 700 -877 390 85 0 0 chr6 99673148 99673207 -89606347 + (TC)n Simple_repeat Simple_repeat 2 60 0 1530 221 60 26 chr6 99673791 99674243 -89605311 + MLT1C LTR MaLR 1 467 0 535 260 20 56 chr6 99674658 99674854 -89604700 + MIR SINE MIR 21 209 -53 384 77 0 0 chr6 99675542 99675594 -89603960 + (CA)n Simple_repeat Simple_repeat 1 52 0 21 71 0 0 chr6 99676589 99676631 -89602923 + AT_rich Low_complexity Low_complexity 1 42 0 1593 193 21 47 chr6 99677022 99677405 -89602149 + MLT1A2 LTR MaLR 2 374 0 469 290 0 74 chr6 99677549 99677711 -89601843 - MER5B DNA MER1_type -28 150 1 4050 63 25 0 chr6 99678142 99678665 -89600889 + L1PA8 LINE L1 5624 6159 -13 22 0 0 0 chr6 99678665 99678687 -89600867 + AT_rich Low_complexity Low_complexity 1 22 0 270 338 0 0 chr6 99679516 99679593 -89599961 + MIR SINE MIR 20 96 -166 42064 38 1 1 chr6 99679777 99685979 -89593575 + L1PA3 LINE L1 2 6202 0 767 284 33 0 chr6 99686072 99686287 -89593267 + MIR SINE MIR 29 250 -12 1175 238 53 27 chr6 99686433 99686644 -89592910 + L1ME1 LINE L1 5739 5943 -223 2179 100 4 0 chr6 99686644 99686958 -89592596 + AluSp SINE Alu 5 319 0 1175 238 53 27 chr6 99686958 99687157 -89592397 + L1ME1 LINE L1 5943 6161 -5 23 0 0 0 chr6 99687157 99687180 -89592374 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 99687318 99687346 -89592208 + AT_rich Low_complexity Low_complexity 1 28 0 494 247 74 47 chr6 99687537 99687727 -89591827 + MIR SINE MIR 20 214 -48 186 318 35 12 chr6 99688359 99688444 -89591110 + L2 LINE L2 2286 2372 -942 1227 117 0 5 chr6 99688602 99688808 -89590746 - L1MA5A LINE L1 0 6297 6093 21 36 0 0 chr6 99688814 99688842 -89590712 + AT_rich Low_complexity Low_complexity 1 28 0 268 167 42 0 chr6 99688851 99688899 -89590655 - L2 LINE L2 0 3313 3264 3628 43 16 0 chr6 99689447 99689890 -89589664 - L1PA7 LINE L1 -2 6152 5703 2135 116 0 30 chr6 99690010 99690313 -89589241 - AluSx SINE Alu -18 294 1 258 373 92 20 chr6 99690634 99690929 -89588625 - L2 LINE L2 -1217 2097 1782 573 259 109 18 chr6 99691157 99691377 -89588177 - MIR SINE MIR 0 262 23 1642 76 56 0 chr6 99691695 99691946 -89587608 + L1MA1 LINE L1 6038 6302 0 539 277 150 27 chr6 99692920 99693180 -89586374 + MLT1I LTR MaLR 98 389 -20 198 298 21 0 chr6 99693499 99693546 -89586008 - L2 LINE L2 -72 3200 3153 239 328 118 92 chr6 99693742 99693980 -89585574 + L2 LINE L2 3029 3272 0 181 200 50 0 chr6 99695007 99695047 -89584507 + L3 LINE CR1 1528 1569 -8 203 186 0 17 chr6 99696080 99696139 -89583415 + CT-rich Low_complexity Low_complexity 1 58 0 1783 208 0 0 chr6 99698865 99699177 -89580377 + AluJb SINE Alu 1 312 0 593 95 0 11 chr6 99700427 99700522 -89579032 + (GGAA)n Simple_repeat Simple_repeat 4 97 0 513 211 157 24 chr6 99702237 99702403 -89577151 + MIR SINE MIR 6 193 -69 1489 220 39 91 chr6 99702411 99702969 -89576585 - MLT1F1 LTR MaLR -13 554 1 292 312 69 2 chr6 99703183 99703292 -89576262 + MIR SINE MIR 40 163 -75 6505 121 32 48 chr6 99703312 99703849 -89575705 + Tigger3b DNA MER2_type 1 545 -2483 1859 118 19 4 chr6 99703849 99704139 -89575415 - AluSx SINE Alu 0 309 16 6505 121 32 48 chr6 99704139 99704333 -89575221 + Tigger3b DNA MER2_type 545 741 -2287 2062 139 0 13 chr6 99704333 99704650 -89574904 - AluSq SINE Alu 0 313 1 6505 121 32 48 chr6 99704650 99705141 -89574413 + Tigger3b DNA MER2_type 741 1205 -26 2415 75 3 0 chr6 99705446 99705738 -89573816 + AluSp SINE Alu 1 293 -20 21 36 0 0 chr6 99705802 99705830 -89573724 + AT_rich Low_complexity Low_complexity 1 28 0 483 219 36 7 chr6 99706072 99706209 -89573345 - L1ME4a LINE L1 0 6121 5981 2805 72 0 13 chr6 99706472 99706845 -89572709 - L1PA8 LINE L1 0 6172 5805 420 209 64 17 chr6 99706865 99707037 -89572517 - L1ME4a LINE L1 -267 5854 5675 857 287 111 24 chr6 99707260 99707685 -89571869 + MLT1K LTR MaLR 101 562 -26 595 280 52 33 chr6 99707753 99707964 -89571590 + MIR SINE MIR 37 251 -11 180 360 52 66 chr6 99707989 99708125 -89571429 - MIR3 SINE MIR -64 144 11 58 47 0 0 chr6 99708297 99708383 -89571171 + AT_rich Low_complexity Low_complexity 1 86 0 691 236 54 74 chr6 99709036 99709278 -89570276 + MIR SINE MIR 13 249 -13 267 360 88 15 chr6 99709299 99709435 -89570119 + MIR3 SINE MIR 52 197 -11 324 48 0 0 chr6 99711092 99711134 -89568420 + (CA)n Simple_repeat Simple_repeat 2 43 0 255 206 44 0 chr6 99711852 99711920 -89567634 - MLT1G LTR MaLR -1 589 519 627 221 78 46 chr6 99712132 99712318 -89567236 - MLT1H LTR MaLR -251 298 103 2148 137 132 5 chr6 99712318 99712698 -89566856 - MSTA LTR MaLR 0 428 1 627 221 78 46 chr6 99712698 99712728 -89566826 - MLT1H LTR MaLR -446 103 75 906 150 0 0 chr6 99714129 99714269 -89565285 + MLT1E1 LTR MaLR 515 654 0 192 77 0 0 chr6 99714343 99714369 -89565185 + (TG)n Simple_repeat Simple_repeat 2 27 0 4551 140 43 26 chr6 99714474 99715325 -89564229 + MER4D LTR ERV1 1 866 -37 328 87 0 0 chr6 99715292 99715338 -89564216 + MER4C LTR ERV1 393 438 -27 * 22 0 0 0 chr6 99715337 99715359 -89564195 + AT_rich Low_complexity Low_complexity 1 22 0 * 297 364 60 22 chr6 99715359 99715543 -89564011 + MIR SINE MIR 37 227 -35 2141 70 0 0 chr6 99716669 99716927 -89562627 - AluY SINE Alu -11 300 43 602 307 92 28 chr6 99716972 99717255 -89562299 + L2 LINE L2 3013 3313 0 2059 146 3 15 chr6 99717507 99717549 -89562005 - MLT2D LTR ERVL 0 414 373 414 0 0 0 chr6 99717549 99717595 -89561959 + (TG)n Simple_repeat Simple_repeat 2 47 0 2059 146 3 15 chr6 99717595 99717881 -89561673 - MLT2D LTR ERVL -41 373 90 1382 186 4 16 chr6 99717909 99718167 -89561387 + AluJb SINE Alu 1 255 -57 375 123 46 15 chr6 99718167 99718232 -89561322 - MLT2D LTR ERVL -345 69 3 1705 170 68 47 chr6 99718688 99719071 -89560483 - MSTD LTR MaLR 0 396 6 258 289 132 26 chr6 99719252 99719366 -89560188 + MIR3 SINE MIR 11 136 -72 24 0 0 0 chr6 99719974 99719998 -89559556 + AT_rich Low_complexity Low_complexity 1 24 0 317 250 147 52 chr6 99720958 99720976 -89558578 - L2 LINE L2 -2 3311 3296 6766 116 58 48 chr6 99720976 99721167 -89558387 + Tigger3b DNA MER2_type 1 188 -2840 2099 154 0 0 chr6 99721167 99721478 -89558076 + AluSx SINE Alu 1 311 -1 6766 116 58 48 chr6 99721478 99722503 -89557051 + Tigger3b DNA MER2_type 188 1230 -1 317 250 147 52 chr6 99722503 99722620 -89556934 - L2 LINE L2 -17 3296 3163 21 0 0 0 chr6 99723473 99723494 -89556060 + AT_rich Low_complexity Low_complexity 1 21 0 639 247 5 54 chr6 99724002 99724188 -89555366 - MER5B DNA MER1_type 0 178 2 2119 84 0 0 chr6 99724339 99724623 -89554931 + L1PB1 LINE L1 5867 6150 -1 217 338 26 0 chr6 99725023 99725100 -89554454 + MIR SINE MIR 20 98 -164 369 291 47 8 chr6 99725101 99725228 -89554326 + MLT1K LTR MaLR 1 132 -463 194 293 35 0 chr6 99725593 99725651 -89553903 - L3 LINE CR1 -3 1574 1515 183 339 71 0 chr6 99726131 99726187 -89553367 - L2 LINE L2 -6 3307 3248 1387 263 75 45 chr6 99726669 99727308 -89552246 - L1MC4a LINE L1 -346 5818 5265 472 291 120 29 chr6 99727311 99727679 -89551875 - L1MC4a LINE L1 -885 5261 4861 471 266 217 44 chr6 99728298 99728704 -89550850 + MLT1K LTR MaLR 86 561 -27 235 309 131 0 chr6 99728744 99728828 -89550726 + L2 LINE L2 3161 3255 -17 193 363 12 12 chr6 99728910 99728990 -89550564 - MIR SINE MIR -162 100 21 529 172 33 33 chr6 99730305 99730427 -89549127 - L1PA16 LINE L1 -2 6164 6043 679 139 0 0 chr6 99730432 99730533 -89549021 - L1PA16 LINE L1 -172 5994 5894 308 269 65 11 chr6 99731833 99731910 -89547644 - L2 LINE L2 -665 2649 2565 429 36 0 0 chr6 99731910 99731965 -89547589 + (TG)n Simple_repeat Simple_repeat 2 56 0 308 269 65 11 chr6 99731965 99731980 -89547574 - L2 LINE L2 -749 2565 2552 520 210 14 14 chr6 99732214 99732352 -89547202 + LTR43 LTR ERV1 184 321 -281 217 301 77 49 chr6 99732565 99732708 -89546846 + L2 LINE L2 2938 3084 -188 2088 230 186 26 chr6 99732785 99733935 -89545619 - L1MC4 LINE L1 -97 7711 6451 222 37 0 0 chr6 99734500 99734527 -89545027 + (TC)n Simple_repeat Simple_repeat 2 28 0 270 0 0 0 chr6 99734530 99734560 -89544994 + (CA)n Simple_repeat Simple_repeat 2 31 0 5102 121 59 34 chr6 99735672 99736651 -89542903 - L1PA16 LINE L1 0 6166 5146 630 224 94 40 chr6 99737049 99737272 -89542282 + MLT1L LTR MaLR 377 611 -4 1068 301 87 37 chr6 99738281 99738717 -89540837 - LTR33 LTR ERVL 0 521 57 2549 58 0 0 chr6 99738717 99739028 -89540526 + AluY SINE Alu 1 311 0 1068 301 87 37 chr6 99739028 99739073 -89540481 - LTR33 LTR ERVL -464 57 16 336 277 167 25 chr6 99740321 99740512 -89539042 - MIR SINE MIR -52 210 1 289 234 71 52 chr6 99740986 99741140 -89538414 - LTR16A1 LTR ERVL 0 457 301 2004 119 16 0 chr6 99742095 99742405 -89537149 + L1MA4 LINE L1 5962 6276 -24 26 0 0 0 chr6 99742529 99742555 -89536999 + AT_rich Low_complexity Low_complexity 1 26 0 810 305 117 18 chr6 99743168 99743509 -89536045 - MLT1J2 LTR MaLR -2 448 74 220 337 65 0 chr6 99744312 99744404 -89535150 + L2 LINE L2 3133 3230 -42 240 325 77 0 chr6 99745148 99745265 -89534289 - MER117 DNA MER1_type -63 134 9 342 296 130 6 chr6 99745695 99745864 -89533690 - MER117 DNA MER1_type -5 192 3 591 226 13 44 chr6 99746076 99746235 -89533319 + MER3 DNA MER1_type 1 154 -55 1190 202 80 40 chr6 99746242 99746593 -89532961 - MLT1A1 LTR MaLR 0 365 1 350 293 140 7 chr6 99746631 99746781 -89532773 - MIR SINE MIR -64 198 29 1638 235 87 20 chr6 99746915 99747374 -89532180 - LTR40a LTR ERVL -7 512 23 273 351 82 15 chr6 99748294 99748428 -89531126 - MIR3 SINE MIR -7 201 59 862 107 0 0 chr6 99749111 99749242 -89530312 + L1MC3 LINE L1 6894 7024 -761 365 147 69 39 chr6 99749319 99749421 -89530133 + L1MD3 LINE L1 7011 7115 -880 322 250 25 12 chr6 99749428 99749508 -89530046 + MLT1F1 LTR MaLR 39 119 -448 2748 181 33 16 chr6 99749512 99750091 -89529463 + L1MD3 LINE L1 7402 7990 -5 515 293 30 6 chr6 99751268 99751432 -89528122 - MIR SINE MIR -6 256 89 734 230 115 54 chr6 99751464 99751742 -89527812 - MLT1J2 LTR MaLR -41 409 115 245 125 21 0 chr6 99751743 99751791 -89527763 + L1MDa LINE L1 314 362 -6178 * 519 155 19 0 chr6 99751786 99751889 -89527665 + L1MD3 LINE L1 7891 7995 0 5343 191 57 42 chr6 99752239 99753780 -89525774 + L1MDa LINE L1 921 2438 -4102 817 136 0 0 chr6 99753780 99753898 -89525656 + FLAM_C SINE Alu 1 118 -15 306 0 0 0 chr6 99753904 99753938 -89525616 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 5343 191 57 42 chr6 99753938 99753995 -89525559 + L1MDa LINE L1 2442 2497 -4043 2493 87 0 0 chr6 99753995 99754307 -89525247 + AluSx SINE Alu 1 312 0 5343 191 57 42 chr6 99754307 99755012 -89524542 + L1MDa LINE L1 2497 3328 -3212 3344 241 66 43 chr6 99755017 99756322 -89523232 + L1MDa LINE L1 3569 4903 -1637 * 3450 262 39 11 chr6 99756311 99757539 -89522015 + L1MCa LINE L1 2367 3632 -2794 1910 147 0 25 chr6 99757554 99757873 -89521681 - AluSx SINE Alu -1 311 1 15589 160 22 10 chr6 99758960 99760036 -89519518 + L1MA3 LINE L1 2585 3647 -4077 2607 164 31 9 chr6 99760036 99760487 -89519067 - LOR1b LTR ERV1 0 461 1 15589 160 22 10 chr6 99760487 99760716 -89518838 + L1MA3 LINE L1 3647 3872 -3852 4446 87 193 13 chr6 99760716 99761416 -89518138 - LTR12 LTR ERV1 0 826 1 15589 160 22 10 chr6 99761416 99761867 -89517687 + L1MA3 LINE L1 3872 4316 -3408 2170 132 0 3 chr6 99761867 99762178 -89517376 + AluSx SINE Alu 1 310 -2 15589 160 22 10 chr6 99762178 99764978 -89514576 + L1MA3 LINE L1 4316 7202 -522 5324 73 7 3 chr6 99764979 99765706 -89513848 + L1PA10 LINE L1 5435 6164 -4 3409 103 17 13 chr6 99765709 99766243 -89513311 + L1MA3 LINE L1 7188 7723 -1 1818 169 7 0 chr6 99766265 99766555 -89512999 + AluJb SINE Alu 1 292 -20 494 200 37 22 chr6 99766555 99766690 -89512864 + L1M4 LINE L1 5156 5292 -854 320 325 66 13 chr6 99767395 99767546 -89512008 - L1ME3A LINE L1 -51 6119 5961 6434 70 8 54 chr6 99767670 99768670 -89510884 - SVA Other Other 0 1386 433 891 23 0 15 chr6 99768687 99769417 -89510137 - SVA Other Other -520 866 737 307 266 63 35 chr6 99769520 99769663 -89509891 - L1MC5 LINE L1 -491 7470 7324 1653 151 4 8 chr6 99770922 99771181 -89508373 + L1PA15 LINE L1 5908 6165 0 687 275 22 60 chr6 99771300 99771557 -89507997 - MIR SINE MIR -3 259 8 325 98 0 0 chr6 99772114 99772155 -89507399 - Alu SINE Alu -262 46 6 23 78 0 0 chr6 99772290 99772341 -89507213 + AT_rich Low_complexity Low_complexity 1 51 0 1613 53 5 0 chr6 99772389 99772596 -89506958 + L1PA7 LINE L1 5277 5484 -688 2263 72 0 0 chr6 99772596 99772906 -89506648 + L1PA6 LINE L1 5861 6176 0 * 5604 61 4 4 chr6 99772905 99773576 -89505978 + L1PA7 LINE L1 5478 6153 -1 25 31 0 0 chr6 99773657 99773689 -89505865 + AT_rich Low_complexity Low_complexity 1 32 0 180 77 0 0 chr6 99775165 99775191 -89504363 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2174 121 0 0 chr6 99776011 99776309 -89503245 + AluSx SINE Alu 1 298 -14 953 197 22 0 chr6 99777732 99777910 -89501644 + MER5A DNA MER1_type 7 188 -1 236 332 53 37 chr6 99777910 99778089 -89501465 + L2 LINE L2 2697 2878 -436 539 264 56 14 chr6 99778346 99778490 -89501064 + L2 LINE L2 3122 3271 -1 296 319 89 7 chr6 99780046 99780181 -89499373 + MER20B DNA MER1_type 34 179 -604 1963 154 7 0 chr6 99781156 99781449 -89498105 + AluSx SINE Alu 1 295 -17 592 135 50 7 chr6 99781449 99781583 -89497971 + GA-rich Low_complexity Low_complexity 6 148 0 180 0 0 0 chr6 99782907 99782927 -89496627 + (CA)n Simple_repeat Simple_repeat 1 20 0 277 299 140 93 chr6 99784466 99784887 -89494667 - L2 LINE L2 -5 3267 2827 523 281 0 22 chr6 99785548 99785683 -89493871 - L2 LINE L2 0 3272 3141 407 265 12 0 chr6 99785750 99785833 -89493721 - MER5A DNA MER1_type -96 93 10 290 250 59 88 chr6 99787255 99787391 -89492163 + MLT1K LTR MaLR 43 174 -414 290 241 96 0 chr6 99787774 99787857 -89491697 + MIR SINE MIR 122 212 -50 187 234 21 0 chr6 99788172 99788219 -89491335 - MIR3 SINE MIR -35 173 126 1964 175 12 63 chr6 99789455 99789866 -89489688 - MLT1B LTR MaLR 0 390 1 429 109 0 0 chr6 99789988 99790052 -89489502 + (TTGG)n Simple_repeat Simple_repeat 2 65 0 1770 158 18 4 chr6 99790055 99790333 -89489221 - AluJo SINE Alu -30 282 1 445 250 0 158 chr6 99790555 99790783 -89488771 - MIR SINE MIR -10 252 61 1087 248 113 63 chr6 99791024 99791548 -89488006 + MLT1H1 LTR MaLR 3 552 -3 1929 172 177 2 chr6 99792397 99792695 -89486859 + L1MC3 LINE L1 6690 6935 -850 219 88 0 0 chr6 99792695 99792729 -89486825 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 1929 172 177 2 chr6 99792729 99792865 -89486689 + L1MC3 LINE L1 6935 7200 -585 * 38568 63 11 0 chr6 99792863 99797726 -89481828 - L1P LINE L1 -1013 5133 221 21 0 0 0 chr6 99898343 99898364 -89381190 + AT_rich Low_complexity Low_complexity 1 21 0 1046 191 34 15 chr6 99899584 99899788 -89379766 + LTR48B LTR ERV1 1 208 -436 3014 112 21 72 chr6 99899788 99900361 -89379193 + LTR10A LTR ERV1 1 544 -65 403 213 115 19 chr6 99900381 99900594 -89378960 + LTR48 LTR ERV1 206 594 -192 * 688 115 19 0 chr6 99900593 99900697 -89378857 + LTR49 LTR ERV1 490 595 0 2158 233 72 31 chr6 99901061 99901644 -89377910 + MER21B LTR ERV1 24 630 -233 187 333 30 0 chr6 99901899 99901965 -89377589 + L3 LINE CR1 1149 1216 -361 * 685 287 93 4 chr6 99901964 99902201 -89377353 - MIR SINE MIR -1 261 4 599 341 30 19 chr6 99902270 99902540 -89377014 + L3 LINE CR1 1243 1515 -62 687 298 75 23 chr6 99902592 99902841 -89376713 + Charlie8 DNA MER1_type 7 272 -58 1868 106 4 0 chr6 99902841 99903105 -89376449 - AluY SINE Alu -6 305 41 687 298 75 23 chr6 99903105 99903120 -89376434 + Charlie8 DNA MER1_type 272 285 -45 394 179 28 38 chr6 99903254 99903360 -89376194 - MER106A DNA MER1_type -16 220 116 21 0 0 0 chr6 99903372 99903393 -89376161 + AT_rich Low_complexity Low_complexity 1 21 0 1639 185 132 2 chr6 99903734 99904151 -89375403 - Charlie1b DNA MER1_type 0 523 53 2914 261 196 33 chr6 99904221 99905985 -89373569 + HAL1 LINE L1 11 2061 -446 491 266 60 30 chr6 99906131 99906364 -89373190 + L1M4 LINE L1 2788 3027 -3119 985 217 81 23 chr6 99906975 99907284 -89372270 + L1MC4 LINE L1 7689 8015 -27 508 303 155 49 chr6 99907323 99907690 -89371864 + MLT1H LTR MaLR 1 406 -143 477 306 46 59 chr6 99907749 99908056 -89371498 + L1M4 LINE L1 3052 3354 -2792 1704 165 4 4 chr6 99908271 99908544 -89371010 + AluJo SINE Alu 1 273 -39 231 310 12 53 chr6 99908642 99908781 -89370773 + L1M4 LINE L1 3607 3739 -2407 2376 94 0 0 chr6 99908781 99909090 -89370464 + AluSq SINE Alu 1 309 -4 231 310 12 53 chr6 99909090 99909121 -89370433 + L1M4 LINE L1 3739 3770 -2376 22 0 0 0 chr6 99909124 99909146 -89370408 + AT_rich Low_complexity Low_complexity 1 22 0 1756 226 115 12 chr6 99909194 99909699 -89369855 - L1MC4 LINE L1 -141 7901 7345 1871 155 3 19 chr6 99910208 99910517 -89369037 + AluJb SINE Alu 7 310 -2 1424 148 112 20 chr6 99910597 99910901 -89368653 - MER44D DNA MER2_type 0 609 8 398 294 72 13 chr6 99910965 99911200 -89368354 + L1M4 LINE L1 3966 4214 -1932 832 282 87 45 chr6 99911244 99911941 -89367613 + L1M4 LINE L1 4298 5043 -1103 2334 94 3 0 chr6 99911941 99912239 -89367315 + AluSp SINE Alu 1 299 -14 832 282 87 45 chr6 99912239 99912446 -89367108 + L1M4 LINE L1 5043 5240 -906 2271 196 68 21 chr6 99913963 99914813 -89364741 + L1ME1 LINE L1 4909 5832 -334 535 202 173 18 chr6 99914816 99914984 -89364570 + MER46C DNA MER2_type 137 330 -8 2247 84 0 0 chr6 99915141 99915464 -89364090 + AluY SINE Alu 1 323 0 1963 116 55 14 chr6 99915899 99916192 -89363362 - AluSx SINE Alu -7 305 1 316 270 138 88 chr6 99916318 99916614 -89362940 - L1ME LINE L1 -461 5660 5350 1993 209 50 12 chr6 99916903 99917323 -89362231 + Tigger6 DNA MER2_type 1 436 -1161 1700 172 56 82 chr6 99917320 99917588 -89361966 + Tigger6 DNA MER2_type 1077 1326 -271 * 2326 106 0 0 chr6 99917588 99917899 -89361655 - AluSx SINE Alu -1 311 1 1700 172 56 82 chr6 99917899 99918165 -89361389 + Tigger6 DNA MER2_type 1326 1597 0 394 288 81 46 chr6 99918460 99918955 -89360599 - L1P LINE L1 -2002 4144 3622 1382 134 39 9 chr6 99919728 99919960 -89359594 - Tigger4(Zombi) DNA MER2_type 0 2731 2493 1196 165 75 26 chr6 99919944 99920088 -89359466 - Tigger4(Zombi) DNA MER2_type -2451 280 144 * 1609 181 27 0 chr6 99920088 99920380 -89359174 - AluJb SINE Alu -12 300 1 1196 165 75 26 chr6 99920380 99920502 -89359052 - Tigger4(Zombi) DNA MER2_type -2587 144 1 617 195 41 0 chr6 99920519 99920642 -89358912 + AluSp/q SINE Alu 163 290 -23 22 0 0 0 chr6 99920926 99920948 -89358606 + AT_rich Low_complexity Low_complexity 1 22 0 2155 104 17 0 chr6 99921684 99921982 -89357572 + AluSx SINE Alu 2 304 -8 346 286 78 67 chr6 99922057 99922259 -89357295 + L1MC4a LINE L1 5562 5771 -2037 1129 112 162 0 chr6 99922259 99922456 -89357098 - MER30 DNA MER1_type -1 229 1 346 286 78 67 chr6 99922456 99922599 -89356955 + L1MC4a LINE L1 5771 5911 -1897 1996 112 0 0 chr6 99922910 99923200 -89356354 + AluSx SINE Alu 40 312 0 3280 156 116 34 chr6 99923543 99924397 -89355157 + L1MC3 LINE L1 6862 7785 0 1961 140 3 0 chr6 99924401 99924721 -89354833 - AluSx SINE Alu 0 312 1 629 271 58 51 chr6 99925579 99925874 -89353680 + MER102a DNA MER1_type 29 325 -5 2175 128 13 0 chr6 99925960 99926258 -89353296 - AluSx SINE Alu -10 302 1 946 191 0 0 chr6 99926945 99927097 -89352457 - AluJb SINE Alu -24 288 137 1968 188 35 23 chr6 99927491 99927890 -89351664 + MER21B LTR ERV1 89 492 -371 21 0 0 0 chr6 99927890 99927911 -89351643 + AT_rich Low_complexity Low_complexity 1 21 0 1698 158 47 7 chr6 99927926 99928204 -89351350 + AluSx SINE Alu 1 289 -23 10292 141 50 27 chr6 99928312 99930255 -89349299 + Ricksha_c DNA DNA 59 2046 0 25 0 0 0 chr6 99930373 99930398 -89349156 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr6 99930865 99930889 -89348665 + AT_rich Low_complexity Low_complexity 1 24 0 2191 97 0 7 chr6 99931730 99932020 -89347534 + AluSx SINE Alu 20 307 -5 2883 193 103 12 chr6 99932058 99932804 -89346750 + LTR1B LTR ERV1 5 818 -8 240 261 138 108 chr6 99932807 99933010 -89346544 - LTR41 LTR ERVL -63 710 502 338 242 65 81 chr6 99933332 99933434 -89346120 - LTR41 LTR ERVL -590 183 84 784 111 345 0 chr6 99933434 99933507 -89346047 - MER30 DNA MER1_type 0 230 183 266 26 53 0 chr6 99933507 99933545 -89346009 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 784 111 345 0 chr6 99933545 99933642 -89345912 - MER30 DNA MER1_type -47 183 1 338 242 65 81 chr6 99933642 99933725 -89345829 - LTR41 LTR ERVL -689 84 1 237 275 37 9 chr6 99934058 99934167 -89345387 + Charlie7 DNA MER1_type 2501 2612 0 2171 119 0 3 chr6 99934234 99934536 -89345018 + AluSx SINE Alu 1 301 -11 321 286 71 0 chr6 99934968 99935080 -89344474 + MIR SINE MIR 74 193 -69 374 287 245 0 chr6 99935899 99936042 -89343512 - MIR SINE MIR -70 192 15 2341 88 7 0 chr6 99936353 99936649 -89342905 - AluSx SINE Alu -14 298 1 241 318 127 32 chr6 99936738 99936864 -89342690 - L2 LINE L2 -922 2392 2255 296 202 61 50 chr6 99937083 99937182 -89342372 + LTR48B LTR ERV1 1 100 -544 * 1479 223 29 36 chr6 99937157 99937605 -89341949 + MER39 LTR ERV1 261 705 -2 296 223 116 18 chr6 99937851 99937963 -89341591 - Charlie8 DNA MER1_type -2246 171 49 1705 168 21 10 chr6 99938056 99938347 -89341207 + AluJo SINE Alu 1 294 -18 1954 151 17 3 chr6 99940779 99941071 -89338483 - AluJb SINE Alu -16 296 1 227 304 126 15 chr6 99941502 99941637 -89337917 - L2 LINE L2 -47 3266 3117 434 218 89 8 chr6 99941927 99942051 -89337503 + MER33 DNA MER1_type 32 165 -159 193 305 153 0 chr6 99942331 99942390 -89337164 - MIR SINE MIR -184 78 11 21 0 0 0 chr6 99943551 99943572 -89335982 + AT_rich Low_complexity Low_complexity 1 21 0 1848 165 7 3 chr6 99943747 99944050 -89335504 + AluJb SINE Alu 1 304 -8 301 222 14 0 chr6 99944277 99944349 -89335205 - MER2 DNA MER2_type -5 340 268 2174 108 6 13 chr6 99944354 99944668 -89334886 + AluSx SINE Alu 1 312 0 816 137 8 0 chr6 99944742 99944873 -89334681 - MER2 DNA MER2_type -210 135 4 2071 118 14 0 chr6 99944925 99945212 -89334342 + AluSq SINE Alu 1 291 -22 2074 137 0 16 chr6 99946029 99946336 -89333218 - AluSp SINE Alu -11 302 1 192 284 11 80 chr6 99946712 99946800 -89332754 + MIR SINE MIR 21 102 -160 197 268 0 36 chr6 99947202 99947258 -89332296 - L2 LINE L2 -8 3305 3252 2151 107 3 0 chr6 99947694 99947985 -89331569 + AluSq SINE Alu 14 305 -8 280 246 0 0 chr6 99948119 99948176 -89331378 - MER112 DNA MER1_type 0 260 204 356 102 0 17 chr6 99948305 99948364 -89331190 - Tigger4(Zombi) DNA MER2_type -2 2729 2672 2082 100 3 10 chr6 99948676 99948976 -89330578 + AluSg SINE Alu 1 298 -12 321 213 75 28 chr6 99949561 99949683 -89329871 + MLT1H LTR MaLR 400 549 0 2367 82 0 13 chr6 99950265 99950569 -89328985 - AluY SINE Alu -11 300 1 250 293 0 27 chr6 99951553 99951628 -89327926 + L2 LINE L2 3017 3089 -183 1753 174 23 3 chr6 99952023 99952322 -89327232 + AluJo SINE Alu 1 305 -7 291 244 42 34 chr6 99952844 99952963 -89326591 - MER20B DNA MER1_type -626 157 38 351 215 19 9 chr6 99953037 99953144 -89326410 + (CATATA)n Simple_repeat Simple_repeat 3 110 0 270 239 0 0 chr6 99953215 99953286 -89326268 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 230 232 219 55 chr6 99953527 99953691 -89325863 + L2 LINE L2 3121 3311 -2 668 176 70 116 chr6 99953882 99953959 -89325595 + AluJo SINE Alu 120 199 -113 1948 96 86 14 chr6 99953959 99954251 -89325303 + AluSp SINE Alu 1 313 0 668 176 70 116 chr6 99954251 99954372 -89325182 + AluJo SINE Alu 199 309 -3 1440 137 67 77 chr6 99955036 99955336 -89324218 - AluJb SINE Alu -5 307 11 1951 109 3 76 chr6 99955727 99956056 -89323498 + AluSx SINE Alu 1 305 -7 273 292 88 26 chr6 99960400 99960513 -89319041 - L2 LINE L2 -10 3262 3143 198 0 0 0 chr6 99960648 99960670 -89318884 + (T)n Simple_repeat Simple_repeat 1 22 0 204 111 0 0 chr6 99960822 99960858 -89318696 + (CA)n Simple_repeat Simple_repeat 2 37 0 311 265 108 126 chr6 99961667 99962112 -89317442 + L1M2 LINE L1 721 1157 -5692 2240 106 0 3 chr6 99962596 99962898 -89316656 - AluSx SINE Alu -11 301 1 2332 97 0 0 chr6 99963338 99963648 -89315906 - AluSx SINE Alu -2 310 1 383 315 21 21 chr6 99964643 99964786 -89314768 - MER5A DNA MER1_type 0 189 47 285 167 39 90 chr6 99964991 99965069 -89314485 + L2 LINE L2 3223 3296 -17 21 0 0 0 chr6 99965345 99965366 -89314188 + AT_rich Low_complexity Low_complexity 1 21 0 463 280 120 52 chr6 99965482 99965856 -89313698 - L1MC4a LINE L1 -1793 6015 5605 1715 168 17 7 chr6 99965856 99966153 -89313401 - AluJo SINE Alu -10 302 3 463 280 120 52 chr6 99966153 99966221 -89313333 - L1MC4a LINE L1 -2203 5605 5543 204 40 0 0 chr6 99966514 99966539 -89313015 + (TCC)n Simple_repeat Simple_repeat 1 25 0 2090 138 0 3 chr6 99966539 99966837 -89312717 - AluSx SINE Alu -15 297 1 11330 79 19 6 chr6 99967979 99974046 -89305508 - L1PA6 LINE L1 -5 6149 11 395 318 75 69 chr6 99974140 99974473 -89305081 + L2 LINE L2 2157 2491 -823 1697 204 102 36 chr6 99974696 99975166 -89304388 + MLT1D LTR MaLR 2 502 -3 2343 103 3 3 chr6 99975286 99975598 -89303956 + AluSq SINE Alu 1 312 -1 628 231 0 0 chr6 99976246 99976380 -89303174 + AluJb SINE Alu 171 304 -8 729 209 4 11 chr6 99976382 99976646 -89302908 + GA-rich Low_complexity Low_complexity 1 262 0 223 230 46 11 chr6 99978144 99978231 -89301323 + A-rich Low_complexity Low_complexity 3 92 0 21 36 0 0 chr6 99978235 99978263 -89301291 + AT_rich Low_complexity Low_complexity 1 28 0 1363 162 40 0 chr6 99978940 99979193 -89300361 - MER2 DNA MER2_type 0 345 83 36 0 0 0 chr6 99979193 99979229 -89300325 + AT_rich Low_complexity Low_complexity 1 36 0 460 130 20 90 chr6 99979248 99979348 -89300206 - MER2 DNA MER2_type -250 95 3 3293 98 7 0 chr6 99979481 99979931 -89299623 + MLT2A2 LTR ERVL 1 453 0 2609 111 72 17 chr6 99980058 99980518 -89299036 - MER31A LTR ERV1 0 485 1 2038 116 34 10 chr6 99980903 99981197 -89298357 + AluSq SINE Alu 1 301 -12 192 40 0 0 chr6 99981840 99981865 -89297689 + (TG)n Simple_repeat Simple_repeat 1 25 0 1707 187 27 19 chr6 99981993 99982362 -89297192 + MLT1A2 LTR MaLR 1 372 -2 1601 186 0 7 chr6 99983270 99983560 -89295994 + AluJb SINE Alu 10 297 -15 2202 115 16 0 chr6 99983562 99983867 -89295687 + AluSq SINE Alu 1 310 -3 212 167 12 83 chr6 99983870 99983954 -89295600 + A-rich Low_complexity Low_complexity 3 80 0 21 36 0 0 chr6 99984466 99984494 -89295060 + AT_rich Low_complexity Low_complexity 1 28 0 498 88 5 88 chr6 99984523 99984715 -89294839 + (TA)n Simple_repeat Simple_repeat 2 177 0 452 106 0 85 chr6 99984765 99984953 -89294601 + (TA)n Simple_repeat Simple_repeat 1 172 0 565 69 6 91 chr6 99984964 99985326 -89294228 + (TA)n Simple_repeat Simple_repeat 1 330 0 424 90 5 95 chr6 99985363 99985762 -89293792 + (TA)n Simple_repeat Simple_repeat 1 363 0 400 112 0 72 chr6 99985864 99986016 -89293538 + (TA)n Simple_repeat Simple_repeat 1 141 0 286 222 141 20 chr6 99986109 99986208 -89293346 - MER46C DNA MER2_type -226 112 2 378 0 0 0 chr6 99986673 99986715 -89292839 + (TG)n Simple_repeat Simple_repeat 2 43 0 308 256 0 0 chr6 99986734 99986820 -89292734 + CT-rich Low_complexity Low_complexity 1 86 0 757 321 23 5 chr6 99987297 99987515 -89292039 - MIR SINE MIR -30 232 11 2269 95 3 0 chr6 99987606 99987900 -89291654 - AluSx SINE Alu -17 295 1 388 320 75 22 chr6 99987935 99988163 -89291391 + MLT1K LTR MaLR 285 524 -64 1342 216 89 14 chr6 99988521 99989026 -89290528 - Charlie2a DNA MER1_type -69 2793 2251 414 267 33 0 chr6 99989106 99989226 -89290328 - MIR SINE MIR -3 259 136 1920 194 91 38 chr6 99989255 99989466 -89290088 - Charlie2a DNA MER1_type -672 2190 1992 1976 166 0 13 chr6 99989466 99989780 -89289774 - AluJb SINE Alu -2 310 1 1920 194 91 38 chr6 99989780 99990196 -89289358 - Charlie2a DNA MER1_type -870 1992 1530 1028 159 0 0 chr6 99990196 99990347 -89289207 - AluJb SINE Alu -6 306 156 252 0 0 0 chr6 99990347 99990375 -89289179 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 816 152 0 0 chr6 99990375 99990487 -89289067 - FLAM_C SINE Alu -25 118 7 273 249 138 39 chr6 99990629 99990810 -89288744 - Charlie2b DNA MER1_type -2112 670 472 31 26 0 0 chr6 99990933 99990971 -89288583 + GC_rich Low_complexity Low_complexity 1 38 0 2073 108 0 43 chr6 99992321 99992645 -89286909 + AluSg SINE Alu 1 310 0 27 0 0 0 chr6 99992647 99992674 -89286880 + AT_rich Low_complexity Low_complexity 1 27 0 712 235 29 49 chr6 99993457 99993534 -89286020 - Charlie2b DNA MER1_type -2375 407 330 1911 119 16 19 chr6 99993534 99993846 -89285708 + L1PA11 LINE L1 5864 6174 0 712 235 29 49 chr6 99993846 99994011 -89285543 - Charlie2b DNA MER1_type -2452 330 170 186 43 0 0 chr6 99994091 99994114 -89285440 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1718 136 8 15 chr6 99994125 99994390 -89285164 - AluSx SINE Alu -49 263 1 5183 63 1 0 chr6 99994520 99995173 -89284381 + L1PA8 LINE L1 5519 6172 0 1191 235 28 0 chr6 99995274 99995529 -89284025 + Tigger7 DNA MER2_type 1 262 -471 681 266 44 104 chr6 99996420 99996700 -89282854 + MLT1I LTR MaLR 67 321 -88 1846 196 3 0 chr6 99996700 99997011 -89282543 + AluJo SINE Alu 1 312 0 681 266 44 104 chr6 99997011 99997095 -89282459 + MLT1I LTR MaLR 321 409 0 182 278 13 99 chr6 99997283 99997434 -89282120 + MIR SINE MIR 125 262 0 190 314 29 48 chr6 99997525 99997630 -89281924 + MIR SINE MIR 112 214 -48 1054 199 149 11 chr6 99997657 99997933 -89281621 - MER21B LTR ERV1 -21 842 529 2550 120 27 40 chr6 99997939 99998390 -89281164 - MER65A LTR ERV1 0 445 1 2409 217 67 10 chr6 99998390 99998990 -89280564 - MER65A-int LTR ERV1 0 4871 4238 1746 234 67 22 chr6 99999000 99999496 -89280058 - MER65A-int LTR ERV1 -749 4122 3605 1791 216 55 77 chr6 99999670 100000493 -89279061 - MER65-int LTR ERV1 -1237 5094 4290 986 195 70 89 chr6 100000487 100000544 -89279010 - MER65-int LTR ERV1 -1913 4418 4361 * 2239 82 10 3 chr6 100000544 100000835 -89278719 - AluSx SINE Alu -19 293 1 986 195 70 89 chr6 100000835 100001247 -89278307 - MER65-int LTR ERV1 -1970 4361 3942 1580 158 28 87 chr6 100001247 100001570 -89277984 + AluJo SINE Alu 1 304 -8 986 195 70 89 chr6 100001570 100001795 -89277759 - MER65-int LTR ERV1 -2389 3942 2477 745 161 9 85 chr6 100001865 100002076 -89277478 - MER65-int LTR ERV1 -2868 3730 3536 1295 184 42 103 chr6 100002341 100002559 -89276995 - MER65-int LTR ERV1 -4323 2435 2205 1941 116 11 4 chr6 100002559 100002874 -89276680 + AluSc SINE Alu 5 321 0 1295 184 42 103 chr6 100002874 100003433 -89276121 - MER65-int LTR ERV1 -4553 2205 1540 293 198 12 12 chr6 100003536 100003617 -89275937 - MER65-int LTR ERV1 -2377 2494 2414 270 167 104 0 chr6 100003617 100003665 -89275889 - AluSp SINE Alu -123 180 128 1110 120 13 52 chr6 100003669 100003787 -89275767 - MER65-int LTR ERV1 -6667 1453 1347 1900 148 7 14 chr6 100003787 100004084 -89275470 - AluJb SINE Alu -17 295 1 1110 120 13 52 chr6 100004084 100004198 -89275356 - MER65-int LTR ERV1 -6773 1347 1230 1806 132 62 7 chr6 100005161 100005434 -89274120 - AluSx SINE Alu -24 288 1 2099 120 7 7 chr6 100005551 100005850 -89273704 - AluSx SINE Alu -13 299 1 638 337 132 22 chr6 100005856 100006266 -89273288 - L3 LINE CR1 -343 1234 780 411 331 8 8 chr6 100006407 100006531 -89273023 - L3 LINE CR1 -827 750 627 194 259 157 65 chr6 100006764 100006872 -89272682 - MIR SINE MIR -111 151 34 456 147 15 38 chr6 100007049 100007321 -89272233 + (TA)n Simple_repeat Simple_repeat 1 265 0 350 151 11 43 chr6 100007334 100007520 -89272034 + (TA)n Simple_repeat Simple_repeat 1 180 0 1064 101 13 0 chr6 100007542 100007701 -89271853 + HERVL LTR ERVL 4862 5022 -632 417 120 0 62 chr6 100007720 100007912 -89271642 + (TA)n Simple_repeat Simple_repeat 1 180 0 2766 91 10 5 chr6 100007912 100008308 -89271246 - MLT2A1 LTR ERVL -46 398 1 5939 70 2 4 chr6 100008308 100009114 -89270440 - HERVL-A1 LTR ERVL 0 5654 4850 4156 71 4 0 chr6 100009249 100009797 -89269757 + L1PA7 LINE L1 5604 6153 -1 209 315 14 0 chr6 100009877 100009950 -89269604 - MIR SINE MIR -1 261 188 519 235 12 54 chr6 100010128 100010294 -89269260 + MIR SINE MIR 46 204 -58 28 29 0 0 chr6 100010295 100010330 -89269224 + AT_rich Low_complexity Low_complexity 1 35 0 222 91 0 0 chr6 100010342 100010375 -89269179 + (GA)n Simple_repeat Simple_repeat 1 33 0 1641 194 3 7 chr6 100010651 100010945 -89268609 - AluJo SINE Alu -19 293 1 490 322 37 35 chr6 100010968 100011381 -89268173 - HERVL68 LTR ERVL -2536 501 9 2796 199 35 0 chr6 100011433 100011976 -89267578 - MER68 LTR ERV1 0 562 1 2195 167 62 0 chr6 100012132 100012551 -89267003 + Tigger1 DNA MER2_type 1650 2094 -324 15702 98 5 2 chr6 100012755 100015168 -89264386 - L1P LINE L1 -804 5342 2923 652 248 114 42 chr6 100015274 100015536 -89264018 + L2 LINE L2 3026 3306 -7 187 375 11 0 chr6 100015719 100015807 -89263747 - L2 LINE L2 -1 3312 3224 2202 119 3 0 chr6 100015809 100016102 -89263452 + AluSc SINE Alu 1 294 -15 2670 174 35 40 chr6 100016151 100016548 -89263006 + L1MB2 LINE L1 5453 5847 -324 1702 147 0 57 chr6 100016548 100016847 -89262707 + AluJo SINE Alu 13 294 -18 2670 174 35 40 chr6 100016847 100017105 -89262449 + L1MB2 LINE L1 5847 6105 -66 2345 80 0 13 chr6 100017106 100017408 -89262146 + AluSx SINE Alu 2 299 -13 2692 7 0 0 chr6 100017408 100017699 -89261855 + AluYa5 SINE Alu 1 291 -20 1011 142 35 6 chr6 100018869 100019038 -89260516 - MSTD LTR MaLR 0 396 223 605 164 9 0 chr6 100019042 100019152 -89260402 - MSTD LTR MaLR -285 111 1 1366 41 0 6 chr6 100019259 100019431 -89260123 - L1MA1 LINE L1 0 6302 6132 220 280 40 0 chr6 100019959 100020009 -89259545 - L3 LINE CR1 -70 1507 1456 21 36 0 0 chr6 100020374 100020402 -89259152 + AT_rich Low_complexity Low_complexity 1 28 0 1700 157 25 21 chr6 100020810 100021114 -89258440 - AluJo SINE Alu 0 305 1 409 307 20 52 chr6 100021309 100021507 -89258047 - MIR SINE MIR -50 212 23 1000 339 81 62 chr6 100022312 100022637 -89256917 - L3 LINE CR1 -10 1567 1250 243 116 0 0 chr6 100022637 100022680 -89256874 - L1MA3 LINE L1 0 6305 6263 1000 339 81 62 chr6 100022680 100023414 -89256140 - L3 LINE CR1 -327 1250 445 294 27 0 0 chr6 100023429 100023466 -89256088 - L1MC3 LINE L1 -292 7493 7457 4269 103 140 125 chr6 100023528 100024051 -89255503 - L1MC3 LINE L1 0 7785 7271 1792 161 0 21 chr6 100024051 100024365 -89255189 - AluSx SINE Alu 0 308 1 4269 103 140 125 chr6 100024365 100024455 -89255099 - L1MC3 LINE L1 -514 7271 7184 338 250 34 0 chr6 100024455 100024543 -89255011 - MLT1F1 LTR MaLR -442 125 35 6084 147 79 76 chr6 100024543 100026534 -89253020 - L1MC3 LINE L1 -743 5403 4967 25 0 0 0 chr6 100026608 100026633 -89252921 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr6 100027482 100027516 -89252038 + AT_rich Low_complexity Low_complexity 1 34 0 321 93 0 0 chr6 100027610 100027664 -89251890 + (TA)n Simple_repeat Simple_repeat 1 54 0 2179 105 3 3 chr6 100027666 100027960 -89251594 - AluSx SINE Alu -18 294 1 508 218 20 0 chr6 100028207 100028308 -89251246 + MER5B DNA MER1_type 1 103 -75 4771 179 45 20 chr6 100028407 100030387 -89249167 - L1MB2 LINE L1 -2 6169 4140 2408 78 3 3 chr6 100030393 100030699 -89248855 - AluSp SINE Alu -7 306 1 339 300 101 58 chr6 100030757 100030930 -89248624 - L2 LINE L2 -536 2778 2614 204 40 0 0 chr6 100030930 100030955 -89248599 + (GGTTG)n Simple_repeat Simple_repeat 4 28 0 339 300 101 58 chr6 100030955 100031128 -89248426 - L2 LINE L2 -700 2614 2417 2429 66 0 3 chr6 100031425 100031726 -89247828 + AluY SINE Alu 1 300 -11 21 0 0 0 chr6 100031911 100031932 -89247622 + AT_rich Low_complexity Low_complexity 1 21 0 657 254 30 6 chr6 100032339 100032504 -89247050 + MIR3 SINE MIR 33 201 -7 21 36 0 0 chr6 100033532 100033560 -89245994 + AT_rich Low_complexity Low_complexity 1 28 0 2238 87 0 10 chr6 100035249 100035547 -89244007 + AluSg SINE Alu 1 295 -15 21 36 0 0 chr6 100036043 100036071 -89243483 + AT_rich Low_complexity Low_complexity 1 28 0 283 263 71 10 chr6 100036542 100036641 -89242913 + MER102a DNA MER1_type 116 220 -110 233 250 36 89 chr6 100037059 100037171 -89242383 + MER102a DNA MER1_type 216 321 -9 22 0 0 0 chr6 100037354 100037376 -89242178 + AT_rich Low_complexity Low_complexity 1 22 0 595 295 183 3 chr6 100037758 100038043 -89241511 - L1MC4a LINE L1 -1944 5864 5529 1732 156 17 13 chr6 100038205 100038506 -89241048 - AluSx SINE Alu -10 302 1 23 0 0 0 chr6 100039138 100039161 -89240393 + AT_rich Low_complexity Low_complexity 1 23 0 2087 120 7 0 chr6 100039173 100039465 -89240089 + AluSx SINE Alu 4 297 -15 189 132 0 0 chr6 100039600 100039638 -89239916 + (T)n Simple_repeat Simple_repeat 1 38 0 9406 38 4 198 chr6 100039654 100041358 -89238196 - SVA Other Other -9 1377 5 2085 112 10 7 chr6 100041380 100041684 -89237870 - AluSq SINE Alu -8 305 1 303 302 88 2 chr6 100041846 100041950 -89237604 + MIR SINE MIR 20 132 -76 2103 103 0 7 chr6 100041967 100042277 -89237277 + AluSc SINE Alu 1 308 0 1980 149 10 3 chr6 100042382 100042684 -89236870 - AluSx SINE Alu -8 304 1 430 213 0 12 chr6 100042756 100042836 -89236718 + Tigger5 DNA MER2_type 1 79 -2244 335 273 0 0 chr6 100042837 100042914 -89236640 - Tigger5 DNA MER2_type -5 2318 2242 * 453 181 0 12 chr6 100042904 100042987 -89236567 + Tigger5 DNA MER2_type 2242 2323 0 204 304 25 51 chr6 100043172 100043251 -89236303 + MIR3 SINE MIR 3 79 -129 25 0 0 0 chr6 100043738 100043763 -89235791 + AT_rich Low_complexity Low_complexity 1 25 0 197 208 0 19 chr6 100045792 100045845 -89233709 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 2270 79 17 0 chr6 100045923 100046213 -89233341 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr6 100046257 100046278 -89233276 + AT_rich Low_complexity Low_complexity 1 21 0 2255 93 0 0 chr6 100046915 100047226 -89232328 + AluSg SINE Alu 1 311 0 339 307 98 53 chr6 100047261 100047525 -89232029 + L1MEd LINE L1 6 281 -5838 1542 180 46 11 chr6 100047547 100047830 -89231724 + AluSx SINE Alu 1 293 -19 1752 151 3 58 chr6 100047840 100048152 -89231402 + AluSx SINE Alu 4 298 -14 180 0 0 0 chr6 100048258 100048278 -89231276 + (CATG)n Simple_repeat Simple_repeat 3 22 0 1304 273 92 40 chr6 100048280 100048933 -89230621 + L1MEd LINE L1 321 1007 -5112 695 181 8 8 chr6 100049426 100049559 -89229995 + FLAM_A SINE Alu 1 133 0 532 248 0 0 chr6 100049875 100049984 -89229570 - MER3 DNA MER1_type -99 110 2 1698 189 7 4 chr6 100050106 100050386 -89229168 - AluJb SINE Alu -25 287 7 2133 135 0 0 chr6 100050677 100050974 -89228580 - AluSx SINE Alu -15 297 1 192 40 0 0 chr6 100050988 100051013 -89228541 + (A)n Simple_repeat Simple_repeat 1 25 0 1118 180 115 50 chr6 100051064 100051134 -89228420 - MER2 DNA MER2_type 0 344 280 1404 163 77 63 chr6 100051134 100051434 -89228120 + AluJb SINE Alu 1 304 -8 1118 180 115 50 chr6 100051434 100051686 -89227868 - MER2 DNA MER2_type -64 280 1 230 239 0 0 chr6 100051916 100051962 -89227592 + L2 LINE L2 3250 3295 -18 264 375 68 24 chr6 100052027 100052278 -89227276 - L2 LINE L2 -337 2977 2716 2221 98 0 16 chr6 100053101 100053418 -89226136 - AluSq SINE Alu -1 312 1 1559 174 3 50 chr6 100053862 100054184 -89225370 - AluJo SINE Alu -5 307 1 1985 139 0 16 chr6 100054184 100054493 -89225061 - AluJb SINE Alu -8 304 1 469 273 62 40 chr6 100055203 100055379 -89224175 - MIR SINE MIR -11 251 72 28 29 0 0 chr6 100064471 100064506 -89215048 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 100064613 100064641 -89214913 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 100064699 100064720 -89214834 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 100065123 100065152 -89214402 + AT_rich Low_complexity Low_complexity 1 29 0 925 196 0 12 chr6 100066073 100066241 -89213313 - FRAM SINE Alu 0 166 1 1423 137 70 0 chr6 100066255 100066482 -89213072 - AluSx SINE Alu -69 243 1 271 309 62 0 chr6 100066999 100067096 -89212458 + L2 LINE L2 2955 3057 -256 670 325 275 24 chr6 100067213 100068576 -89210978 + L2 LINE L2 807 2589 -725 1981 112 74 3 chr6 100068576 100068861 -89210693 - AluSc SINE Alu -4 305 1 670 325 275 24 chr6 100068861 100069012 -89210542 + L2 LINE L2 2589 2701 -613 2245 118 0 0 chr6 100069207 100069503 -89210051 + AluSq SINE Alu 1 296 -17 453 311 107 39 chr6 100069619 100070031 -89209523 - L2 LINE L2 -480 2834 2395 264 282 244 34 chr6 100070161 100070452 -89209102 - L2 LINE L2 -1320 1994 1643 7781 147 34 18 chr6 100070575 100070626 -89208928 - L1MC/D LINE L1 -672 5489 5440 3220 82 24 7 chr6 100070626 100071089 -89208465 - L1PA13 LINE L1 0 6163 5693 7781 147 34 18 chr6 100071089 100072075 -89207479 - L1MC/D LINE L1 -721 5440 4488 2471 84 3 0 chr6 100072075 100072385 -89207169 - AluSp SINE Alu -2 311 1 7781 147 34 18 chr6 100072385 100073094 -89206460 - L1MC/D LINE L1 -1673 4488 3792 194 324 143 19 chr6 100073125 100073230 -89206324 + L2 LINE L2 3150 3267 -5 298 262 96 70 chr6 100073337 100073566 -89205988 - L2 LINE L2 -1159 2155 1921 185 260 219 18 chr6 100074088 100074257 -89205297 - L2 LINE L2 -2287 1027 825 706 203 91 0 chr6 100074406 100074549 -89205005 + FRAM SINE Alu 1 156 -20 835 238 44 22 chr6 100074917 100075144 -89204410 - MIR SINE MIR 0 262 31 299 51 38 51 chr6 100075296 100075375 -89204179 + (TA)n Simple_repeat Simple_repeat 1 78 0 201 147 0 0 chr6 100075431 100075465 -89204089 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 2369 83 10 0 chr6 100076128 100076430 -89203124 - AluY SINE Alu -6 305 1 243 275 113 0 chr6 100077586 100077666 -89201888 - MIR SINE MIR 0 262 174 213 39 0 0 chr6 100077815 100077841 -89201713 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr6 100078366 100078387 -89201167 + AT_rich Low_complexity Low_complexity 1 21 0 210 345 55 73 chr6 100078871 100078981 -89200573 - L2 LINE L2 -43 3229 3122 290 233 68 14 chr6 100079058 100079131 -89200423 - MIR SINE MIR -52 210 134 373 336 164 24 chr6 100079444 100079694 -89199860 - L3 LINE CR1 -2 1575 1291 278 306 105 74 chr6 100079729 100080092 -89199462 - L3 LINE CR1 -561 1016 643 240 263 110 107 chr6 100080136 100080490 -89199064 - MLT1J LTR MaLR -51 460 106 23 33 0 0 chr6 100081129 100081159 -89198395 + AT_rich Low_complexity Low_complexity 1 30 0 2227 119 3 0 chr6 100081590 100081892 -89197662 + AluSx SINE Alu 3 305 -7 753 191 21 14 chr6 100081892 100082033 -89197521 - FRAM SINE Alu -32 144 3 21 36 0 0 chr6 100082208 100082236 -89197318 + AT_rich Low_complexity Low_complexity 1 28 0 477 227 48 92 chr6 100082271 100082478 -89197076 - MLT1K LTR MaLR -11 577 380 275 347 201 7 chr6 100086749 100087322 -89192232 + L2 LINE L2 1793 2476 -838 236 30 30 0 chr6 100087723 100087756 -89191798 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 241 242 179 10 chr6 100087757 100087870 -89191684 - MIR SINE MIR -64 144 34 1057 176 9 44 chr6 100087881 100088108 -89191446 - MER20 DNA MER1_type 0 219 1 186 372 23 23 chr6 100088132 100088218 -89191336 + MIR SINE MIR 45 130 -78 2210 111 0 0 chr6 100088875 100089163 -89190391 - AluSg SINE Alu -22 288 1 1296 271 106 62 chr6 100089467 100090194 -89189360 + L2 LINE L2 2218 2976 -338 302 305 51 56 chr6 100091074 100091271 -89188283 - MIR3 SINE MIR -51 157 20 1001 178 14 10 chr6 100091675 100091883 -89187671 + MER58A DNA MER1_type 7 215 -9 28 29 0 0 chr6 100092297 100092332 -89187222 + AT_rich Low_complexity Low_complexity 1 35 0 271 266 63 114 chr6 100093710 100093868 -89185686 - MIR3 SINE MIR -15 193 44 2173 89 4 0 chr6 100094015 100094327 -89185227 - AluSc SINE Alu 0 313 1 233 29 29 0 chr6 100094437 100094471 -89185083 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 599 306 48 10 chr6 100095574 100095780 -89183774 + L3 LINE CR1 1007 1220 -357 486 321 24 12 chr6 100095868 100096033 -89183521 + MIR SINE MIR 25 191 -71 180 311 0 0 chr6 100097572 100097617 -89181937 + L2 LINE L2 3261 3305 -8 1843 243 102 12 chr6 100097926 100098444 -89181110 + MER69 DNA AcHobo 4 568 -658 427 222 111 34 chr6 100098433 100098667 -89180887 + MER69 DNA AcHobo 2010 2261 -265 * 39986 57 3 1 chr6 100102043 100108190 -89171364 + L1PA3 LINE L1 2 6155 0 371 289 110 32 chr6 100108183 100108224 -89171330 + L1MDa LINE L1 1262 1298 -5423 * 7288 48 0 0 chr6 100108224 100109381 -89170173 + L1PA5 LINE L1 4992 6148 -6 371 289 110 32 chr6 100109381 100109939 -89169615 + L1MDa LINE L1 1298 1949 -4772 1626 222 81 3 chr6 100110114 100110497 -89169057 + MLT2F LTR ERVL 184 596 -67 606 83 31 0 chr6 100110532 100110628 -89168926 - LTR47A LTR ERVL -2 450 352 329 207 149 0 chr6 100110676 100110763 -89168791 - LTR47A LTR ERVL -92 360 261 1077 228 16 75 chr6 100111007 100111500 -89168054 + L1M4 LINE L1 4841 5305 -841 1073 108 0 0 chr6 100111500 100111658 -89167896 + L1PB1 LINE L1 5994 6151 0 576 199 24 30 chr6 100111821 100111987 -89167567 + L1ME3A LINE L1 4968 5132 -1014 1510 173 105 8 chr6 100112039 100112420 -89167134 + L1ME3A LINE L1 5374 5791 -379 765 229 174 14 chr6 100112421 100112696 -89166858 - MER110 LTR ERV1 -7 484 166 688 238 29 45 chr6 100112963 100113207 -89166347 + L1ME3A LINE L1 5926 6165 -5 2335 99 0 3 chr6 100113230 100113532 -89166022 + AluSg1 SINE Alu 1 301 -8 903 199 44 6 chr6 100114761 100114942 -89164612 + MER5A DNA MER1_type 1 188 -1 280 235 74 0 chr6 100115863 100115944 -89163610 - L2 LINE L2 -94 3219 3133 477 334 62 30 chr6 100116277 100116508 -89163046 + MLT1K LTR MaLR 155 406 -182 2129 140 0 13 chr6 100116508 100116823 -89162731 + AluSx SINE Alu 1 311 -1 477 334 62 30 chr6 100116823 100116995 -89162559 + MLT1K LTR MaLR 406 571 -17 246 320 75 7 chr6 100117622 100117769 -89161785 + L2 LINE L2 1992 2148 -1166 275 350 49 107 chr6 100117864 100118071 -89161483 + L2 LINE L2 2919 3136 -136 1966 158 0 29 chr6 100118071 100118387 -89161167 + AluSx SINE Alu 1 307 -5 275 350 49 107 chr6 100118387 100118426 -89161128 + L2 LINE L2 3136 3176 -96 2397 89 0 3 chr6 100118426 100118729 -89160825 - AluSq SINE Alu -11 302 1 275 350 49 107 chr6 100118729 100118827 -89160727 + L2 LINE L2 3176 3244 -28 27 49 0 0 chr6 100118949 100118990 -89160564 + AT_rich Low_complexity Low_complexity 1 41 0 24 32 0 0 chr6 100119116 100119147 -89160407 + AT_rich Low_complexity Low_complexity 1 31 0 294 245 20 92 chr6 100119483 100119581 -89159973 - MLT1H LTR MaLR -206 343 253 3910 100 35 9 chr6 100120667 100121296 -89158258 + L1MA3 LINE L1 5637 6281 -24 26 0 0 0 chr6 100121296 100121322 -89158232 + AT_rich Low_complexity Low_complexity 1 26 0 5228 106 28 52 chr6 100121463 100121935 -89157619 - MER4D LTR ERV1 0 872 429 2320 97 0 26 chr6 100121935 100122243 -89157311 + AluSx SINE Alu 1 300 -12 5228 106 28 52 chr6 100122243 100122660 -89156894 - MER4D LTR ERV1 -443 429 4 1297 170 109 64 chr6 100122661 100122839 -89156715 - THE1C LTR MaLR 0 375 206 186 43 0 0 chr6 100122839 100122862 -89156692 + (GA)n Simple_repeat Simple_repeat 1 23 0 1297 170 109 64 chr6 100122862 100123042 -89156512 - THE1C LTR MaLR -169 206 1 42809 40 26 1 chr6 100124277 100130277 -89149277 - L1PA3 LINE L1 0 6155 2 2119 95 0 52 chr6 100130282 100130588 -89148966 - AluSx SINE Alu -21 291 2 22 94 0 0 chr6 100130633 100130697 -89148857 + AT_rich Low_complexity Low_complexity 1 64 0 289 264 100 43 chr6 100130910 100131050 -89148504 - MIR SINE MIR -61 201 54 219 36 0 0 chr6 100132596 100132624 -89146930 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 186 43 0 0 chr6 100133319 100133342 -89146212 + (TA)n Simple_repeat Simple_repeat 2 24 0 323 159 111 0 chr6 100133343 100133406 -89146148 + MSTB1 LTR MaLR 93 162 -270 229 202 44 35 chr6 100133464 100133578 -89145976 + (TATAA)n Simple_repeat Simple_repeat 2 116 0 3210 102 14 12 chr6 100133974 100134405 -89145149 - MSTB1 LTR MaLR 0 432 1 2827 151 24 2 chr6 100134838 100135255 -89144299 - MSTB LTR MaLR 0 426 1 270 0 0 0 chr6 100135433 100135463 -89144091 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 660 163 0 0 chr6 100135503 100135601 -89143953 - AluJ/FLAM SINE Alu -213 99 2 1466 131 20 81 chr6 100136739 100137036 -89142518 + AluJo SINE Alu 14 292 -20 1599 179 8 4 chr6 100138658 100138926 -89140628 - AluJo SINE Alu -43 269 1 36 77 0 0 chr6 100138929 100139007 -89140547 + AT_rich Low_complexity Low_complexity 1 78 0 1451 181 83 62 chr6 100139268 100139704 -89139850 - LTR56 LTR ERV1 0 445 1 180 0 0 0 chr6 100139905 100139925 -89139629 + (T)n Simple_repeat Simple_repeat 1 20 0 647 237 108 7 chr6 100139927 100140066 -89139488 + AluJo SINE Alu 3 155 -157 1457 154 21 9 chr6 100140067 100140300 -89139254 + AluJo SINE Alu 47 282 -30 423 0 0 0 chr6 100140324 100140371 -89139183 + (TG)n Simple_repeat Simple_repeat 1 47 0 417 20 0 0 chr6 100140412 100140462 -89139092 + (TG)n Simple_repeat Simple_repeat 2 51 0 242 350 80 19 chr6 100143334 100143494 -89136060 - MIR3 SINE MIR -34 174 4 872 267 92 44 chr6 100143616 100143976 -89135578 - MER110 LTR ERV1 0 491 115 437 269 87 0 chr6 100144058 100144162 -89135392 + MER81 DNA DNA 1 113 -1 2059 189 100 30 chr6 100144845 100145294 -89134260 + MLT1D LTR MaLR 1 486 -19 2459 128 107 15 chr6 100145294 100145686 -89133868 + MSTC LTR MaLR 1 428 0 2059 189 100 30 chr6 100145686 100145708 -89133846 + MLT1D LTR MaLR 486 505 0 433 250 156 0 chr6 100146379 100146559 -89132995 + MIR SINE MIR 49 256 -6 2262 108 17 0 chr6 100146642 100146939 -89132615 + AluSx SINE Alu 5 306 -6 1644 221 106 8 chr6 100147811 100148304 -89131250 - L1MD2 LINE L1 -4 6355 5815 229 196 18 54 chr6 100148315 100148371 -89131183 - MER5B DNA MER1_type -123 55 2 330 274 20 10 chr6 100148620 100148722 -89130832 - MLT1K LTR MaLR -16 572 470 2202 108 3 0 chr6 100148872 100149168 -89130386 + AluSx SINE Alu 1 297 -15 514 234 179 0 chr6 100150014 100150159 -89129395 + MIR SINE MIR 77 247 -15 272 194 0 16 chr6 100151016 100151078 -89128476 + L1ME4a LINE L1 6052 6112 -9 409 281 150 24 chr6 100151701 100151954 -89127600 + L2 LINE L2 3028 3312 -1 236 252 293 48 chr6 100153254 100153401 -89126153 + MER5A DNA MER1_type 7 189 0 1133 128 12 0 chr6 100154264 100154454 -89125100 + L1MA3 LINE L1 6098 6303 0 1967 142 10 26 chr6 100154845 100155156 -89124398 - AluSx SINE Alu -5 307 2 227 293 120 0 chr6 100156156 100156231 -89123323 + MIR SINE MIR 32 115 -93 1906 165 0 0 chr6 100156277 100156568 -89122986 + AluJb SINE Alu 1 291 -21 183 333 75 11 chr6 100156686 100156779 -89122775 + L2 LINE L2 3136 3234 -38 238 263 66 75 chr6 100157965 100158193 -89121361 - L1ME4a LINE L1 -1 6120 5895 392 273 0 0 chr6 100158923 100159011 -89120543 + L2 LINE L2 3223 3310 -3 181 328 127 16 chr6 100159210 100159326 -89120228 + L3b LINE CR1 1347 1449 -134 2450 62 3 0 chr6 100159326 100159618 -89119936 + AluY SINE Alu 3 295 -16 181 328 127 16 chr6 100159618 100159690 -89119864 + L3b LINE CR1 1449 1556 -27 315 311 28 9 chr6 100159848 100159954 -89119600 - MIR SINE MIR -148 114 7 195 176 20 59 chr6 100161217 100161268 -89118286 - L3 LINE CR1 -373 1204 1156 2130 123 7 13 chr6 100161397 100161699 -89117855 - AluSx SINE Alu -12 300 1 270 284 37 49 chr6 100161803 100161884 -89117670 - L2 LINE L2 0 3272 3193 1826 157 51 0 chr6 100162015 100162309 -89117245 + AluJb SINE Alu 1 309 -3 231 366 44 40 chr6 100162680 100162953 -89116601 + L2 LINE L2 2379 2652 -662 220 276 26 13 chr6 100163101 100163177 -89116377 + MIR SINE MIR 79 155 -107 2004 138 0 0 chr6 100163193 100163469 -89116085 + AluSx SINE Alu 1 276 -36 414 233 26 17 chr6 100163469 100163585 -89115969 + MIR SINE MIR 131 247 -15 543 286 42 42 chr6 100163928 100164187 -89115367 + MIR SINE MIR 3 261 -1 1563 192 134 70 chr6 100164238 100164351 -89115203 + Charlie1b DNA MER1_type 1 105 -2656 4423 29 0 0 chr6 100164351 100164835 -89114719 - L1PA3 LINE L1 -7 6148 5665 1563 192 134 70 chr6 100164835 100165000 -89114554 + Charlie1b DNA MER1_type 105 258 -2503 1926 155 7 3 chr6 100165000 100165290 -89114264 + AluSx SINE Alu 1 291 -21 1563 192 134 70 chr6 100165290 100165494 -89114060 + Charlie1b DNA MER1_type 258 515 -8 2357 138 24 16 chr6 100166993 100167376 -89112178 - LTR45B LTR ERV1 -101 388 3 2058 157 45 148 chr6 100167414 100168076 -89111478 - LTR8A LTR ERV1 -100 627 34 1861 148 0 0 chr6 100169009 100169273 -89110281 + AluJb SINE Alu 1 264 -48 2436 111 41 36 chr6 100169273 100169635 -89109919 - THE1B LTR MaLR 0 364 1 12370 84 17 5 chr6 100169635 100171195 -89108359 - THE1B-int LTR MaLR 0 1580 1 1997 133 62 37 chr6 100171195 100171547 -89108007 - THE1B LTR MaLR 0 364 4 232 125 0 0 chr6 100171550 100171590 -89107964 + AluJb SINE Alu 260 299 -3 467 288 129 0 chr6 100172109 100172272 -89107282 - MIR SINE MIR -13 249 66 794 254 65 24 chr6 100172328 100172576 -89106978 - MIR SINE MIR -2 260 3 21 36 0 0 chr6 100172833 100172861 -89106693 + AT_rich Low_complexity Low_complexity 1 28 0 2700 111 17 11 chr6 100173049 100173410 -89106144 - THE1B LTR MaLR -1 363 1 2455 68 0 0 chr6 100173888 100174182 -89105372 + AluY SINE Alu 6 299 -12 2015 224 56 41 chr6 100174418 100174630 -89104924 + L1ME1 LINE L1 5607 5814 -520 1483 137 4 44 chr6 100174630 100174879 -89104675 + AluJo SINE Alu 44 282 -30 2015 224 56 41 chr6 100174879 100175236 -89104318 + L1ME1 LINE L1 5814 6334 0 2189 122 3 0 chr6 100175245 100175540 -89104014 + AluSx SINE Alu 1 296 -16 406 354 48 7 chr6 100175623 100175770 -89103784 + MIR SINE MIR 33 185 -77 1843 171 48 26 chr6 100175789 100176141 -89103413 + MER47A DNA MER2_type 7 366 0 1420 197 11 18 chr6 100176905 100177210 -89102344 + AluJb SINE Alu 1 303 0 1870 124 8 0 chr6 100177212 100177477 -89102077 + AluSx SINE Alu 1 267 -45 219 188 0 0 chr6 100177481 100177529 -89102025 + GA-rich Low_complexity Low_complexity 3 50 0 523 188 10 0 chr6 100177969 100178065 -89101489 + MSTC LTR MaLR 1 97 -299 2184 124 3 0 chr6 100178065 100178364 -89101190 + AluSx SINE Alu 1 300 -12 597 134 11 78 chr6 100178368 100178553 -89101001 + MSTC LTR MaLR 203 424 -4 339 324 37 57 chr6 100178559 100178858 -89100696 + L1MC4a LINE L1 4875 5167 -979 350 261 81 11 chr6 100178947 100179213 -89100341 + L1MC4a LINE L1 5197 5471 -771 668 224 114 38 chr6 100179253 100179484 -89100070 + L1MC4a LINE L1 5574 5823 -1980 795 161 39 23 chr6 100179484 100179614 -89099940 + FLAM_C SINE Alu 1 132 -1 365 121 69 0 chr6 100179637 100179695 -89099859 + MSTB1 LTR MaLR 1 62 -395 1568 152 37 7 chr6 100179695 100179965 -89099589 + AluJb SINE Alu 1 278 -34 389 129 14 0 chr6 100179968 100180038 -89099516 + GA-rich Low_complexity Low_complexity 2 72 0 1562 172 44 86 chr6 100180040 100180448 -89099106 + MSTB1 LTR MaLR 42 432 0 1513 239 93 51 chr6 100180553 100180824 -89098730 - L2 LINE L2 0 3313 3055 2476 82 0 0 chr6 100180824 100181127 -89098427 + AluSc SINE Alu 1 303 -6 1513 239 93 51 chr6 100181127 100181434 -89098120 - L2 LINE L2 -258 3055 2763 1973 128 0 17 chr6 100181434 100181751 -89097803 - AluSx SINE Alu 0 312 1 1817 125 50 0 chr6 100181754 100182033 -89097521 - AluJb SINE Alu -19 293 1 1513 239 93 51 chr6 100182033 100182367 -89097187 - L2 LINE L2 -551 2762 2374 256 179 26 0 chr6 100182470 100182548 -89097006 + (TA)n Simple_repeat Simple_repeat 1 80 0 32 26 0 0 chr6 100182701 100182740 -89096814 + AT_rich Low_complexity Low_complexity 1 39 0 2270 87 7 0 chr6 100182878 100183165 -89096389 - AluSx SINE Alu -19 293 5 21 0 0 0 chr6 100183510 100183531 -89096023 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 100183740 100183768 -89095786 + AT_rich Low_complexity Low_complexity 1 28 0 467 269 67 0 chr6 100183967 100184086 -89095468 + MER119 DNA MER1_type 6 132 -451 553 203 0 91 chr6 100184088 100184231 -89095323 + MER119 DNA MER1_type 454 583 0 2149 126 0 0 chr6 100184256 100184558 -89094996 + AluSq SINE Alu 1 302 -11 2803 144 16 14 chr6 100185115 100185559 -89093995 - MER65A LTR ERV1 0 445 1 730 101 0 42 chr6 100186762 100186881 -89092673 + L1PA8 LINE L1 6059 6172 0 333 287 31 31 chr6 100186902 100187031 -89092523 + L1MC/D LINE L1 5601 5729 -392 24 0 0 0 chr6 100187044 100187068 -89092486 + AT_rich Low_complexity Low_complexity 1 24 0 835 199 0 0 chr6 100187371 100187517 -89092037 + FRAM SINE Alu 1 146 -30 315 0 0 0 chr6 100187521 100187556 -89091998 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2496 88 52 21 chr6 100187980 100188297 -89091257 - Tigger4(Zombi) DNA MER2_type 0 2731 2398 1924 143 34 3 chr6 100188297 100188590 -89090964 + AluSx SINE Alu 1 302 -10 2496 88 52 21 chr6 100188590 100188659 -89090895 - Tigger4(Zombi) DNA MER2_type -333 2398 2333 655 143 29 0 chr6 100188661 100188766 -89090788 - Tigger4(Zombi) DNA MER2_type -2500 231 124 236 309 10 21 chr6 100188811 100188908 -89090646 + GA-rich Low_complexity Low_complexity 2 97 0 2490 69 0 0 chr6 100189271 100189575 -89089979 - AluY SINE Alu -5 306 3 412 330 23 17 chr6 100189980 100190153 -89089401 - MIR SINE MIR 0 262 89 1709 179 16 7 chr6 100190304 100190611 -89088943 - MER58B DNA MER1_type 0 341 32 26 0 0 0 chr6 100190927 100190953 -89088601 + AT_rich Low_complexity Low_complexity 1 26 0 2427 135 28 22 chr6 100191446 100191652 -89087902 - MLT1A1 LTR MaLR 0 365 155 2267 107 0 3 chr6 100191652 100191952 -89087602 - AluSx SINE Alu -13 299 1 2427 135 28 22 chr6 100191952 100192108 -89087446 - MLT1A1 LTR MaLR -210 155 1 207 0 0 0 chr6 100192729 100192752 -89086802 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 2313 68 4 0 chr6 100192752 100193032 -89086522 - AluSp SINE Alu -32 281 1 660 220 64 12 chr6 100193097 100193270 -89086284 + MIR SINE MIR 81 262 0 673 279 15 25 chr6 100193493 100193697 -89085857 + MIR SINE MIR 40 241 -21 252 239 14 28 chr6 100195176 100195247 -89084307 + MER5A DNA MER1_type 7 76 -113 2386 97 3 3 chr6 100195247 100195556 -89083998 + AluSc SINE Alu 1 309 0 314 283 94 7 chr6 100195609 100195747 -89083807 + L1ME4a LINE L1 4022 4171 -1975 2670 185 20 21 chr6 100195755 100196679 -89082875 + L1ME4a LINE L1 4715 5638 -706 2070 146 82 0 chr6 100196679 100197021 -89082533 + L1MC1 LINE L1 5957 6327 -6 412 286 128 8 chr6 100197232 100197466 -89082088 + L1ME4a LINE L1 5621 5882 -239 403 298 95 51 chr6 100198002 100198297 -89081257 - L2 LINE L2 0 3313 3006 955 178 128 0 chr6 100198415 100198595 -89080959 + MER3 DNA MER1_type 7 209 0 613 249 86 49 chr6 100198977 100199322 -89080232 + LTR18A LTR ERVL 1 614 0 2220 121 0 6 chr6 100199393 100199707 -89079847 - AluSx SINE Alu 0 312 1 2083 128 20 0 chr6 100199908 100200204 -89079350 + AluSx SINE Alu 1 302 -10 293 255 122 10 chr6 100200815 100200913 -89078641 - L2 LINE L2 -28 3244 3136 485 245 35 7 chr6 100200916 100201059 -89078495 + L1MB5 LINE L1 5936 6082 -92 361 332 92 43 chr6 100201060 100201630 -89077924 - L2 LINE L2 -194 3078 2470 1955 155 0 13 chr6 100202181 100202491 -89077063 + AluJo SINE Alu 1 306 -6 1252 54 96 0 chr6 100202494 100202661 -89076893 - AluY SINE Alu -8 303 121 34 24 0 0 chr6 100202779 100202820 -89076734 + AT_rich Low_complexity Low_complexity 1 41 0 261 0 0 0 chr6 100203003 100203032 -89076522 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1249 181 40 40 chr6 100203032 100203308 -89076246 - AluJo SINE Alu -32 280 5 359 106 0 0 chr6 100203391 100203438 -89076116 - Alu SINE Alu -251 48 2 355 391 17 6 chr6 100203645 100203819 -89075735 - MIR3 SINE MIR -17 191 16 21 36 0 0 chr6 100204357 100204385 -89075169 + AT_rich Low_complexity Low_complexity 1 28 0 2239 95 0 7 chr6 100204536 100204842 -89074712 - AluY SINE Alu -7 304 1 2107 95 24 3 chr6 100205614 100205908 -89073646 - AluY SINE Alu -11 300 1 1917 135 7 0 chr6 100206090 100206372 -89073182 - AluSq SINE Alu -29 284 1 222 37 0 0 chr6 100206813 100206840 -89072714 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1938 125 0 0 chr6 100206842 100207123 -89072431 - AluSx SINE Alu -31 281 1 2257 103 3 0 chr6 100207151 100207452 -89072102 - AluSp SINE Alu -11 302 1 28 48 0 0 chr6 100207675 100207717 -89071837 + AT_rich Low_complexity Low_complexity 1 42 0 339 272 3 10 chr6 100208128 100208271 -89071283 + FRAM SINE Alu 13 140 -26 2027 42 0 0 chr6 100260740 100260976 -89018578 - AluY SINE Alu -75 236 1 228 225 22 22 chr6 100261674 100261763 -89017791 + L1MC4 LINE L1 6614 6702 -1340 301 320 0 10 chr6 100261774 100261871 -89017683 - L1MC4 LINE L1 -1339 6703 6608 402 313 41 20 chr6 100262149 100262296 -89017258 + MIR SINE MIR 63 212 -50 2262 118 3 0 chr6 100262392 100262697 -89016857 + AluSx SINE Alu 1 306 -6 496 327 15 56 chr6 100262741 100263007 -89016547 + L2 LINE L2 1084 1338 -1976 425 200 0 11 chr6 100263021 100263116 -89016438 + L1MEc LINE L1 39 132 -6264 448 335 84 32 chr6 100263117 100263703 -89015851 + L1MEc LINE L1 202 817 -5579 2289 90 0 10 chr6 100263709 100264020 -89015534 - AluSq SINE Alu -5 308 1 386 310 63 14 chr6 100264608 100264750 -89014804 - MIR SINE MIR -8 254 106 302 257 50 30 chr6 100264775 100264876 -89014678 - MLT1H LTR MaLR -16 533 431 610 257 114 9 chr6 100264976 100265186 -89014368 - MLT1H LTR MaLR -292 257 26 1051 260 67 28 chr6 100265241 100265629 -89013925 - MLT1J LTR MaLR 0 511 109 334 263 91 34 chr6 100265829 100266004 -89013550 - L1ME4a LINE L1 -6 6115 5931 369 295 45 30 chr6 100266054 100266254 -89013300 - L1ME4a LINE L1 0 6121 5919 288 266 25 0 chr6 100267932 100268011 -89011543 - MIR SINE MIR -148 114 34 2272 60 49 0 chr6 100268405 100268690 -89010864 - AluSp SINE Alu -14 299 1 21 0 0 0 chr6 100268699 100268720 -89010834 + AT_rich Low_complexity Low_complexity 1 21 0 2378 170 44 4 chr6 100270438 100271035 -89008519 - L1P LINE L1 -727 5429 4809 465 121 48 0 chr6 100271035 100271118 -89008436 + L1PB4 LINE L1 5434 5520 -636 203 0 0 36 chr6 100271812 100271840 -89007714 + (TTTAA)n Simple_repeat Simple_repeat 4 30 0 2056 114 3 7 chr6 100271843 100272132 -89007422 - AluSx SINE Alu -19 293 6 2626 117 38 12 chr6 100272378 100272804 -89006750 + L1PB4 LINE L1 5720 6156 0 1872 154 0 10 chr6 100273484 100273777 -89005777 - AluSx SINE Alu -22 290 1 22 56 0 0 chr6 100274070 100274106 -89005448 + AT_rich Low_complexity Low_complexity 1 36 0 292 206 14 50 chr6 100274400 100274541 -89005013 + (TA)n Simple_repeat Simple_repeat 2 137 0 21 0 0 0 chr6 100276731 100276752 -89002802 + AT_rich Low_complexity Low_complexity 1 21 0 2176 70 56 7 chr6 100276930 100277215 -89002339 - AluSc SINE Alu -10 299 1 1645 168 31 21 chr6 100278007 100278293 -89001261 + AluJb SINE Alu 1 289 -23 781 167 0 36 chr6 100278305 100278443 -89001111 - FLAM_C SINE Alu 0 133 1 1433 208 26 0 chr6 100279006 100279275 -89000279 + AluJo SINE Alu 28 303 -9 655 298 0 0 chr6 100279622 100279783 -88999771 + MIR SINE MIR 3 163 -99 216 0 0 0 chr6 100280089 100280113 -88999441 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2437 84 0 0 chr6 100280381 100280679 -88998875 + AluSx SINE Alu 1 298 -14 231 91 0 0 chr6 100281116 100281149 -88998405 - L1MB1 LINE L1 -217 5972 5940 2372 92 0 3 chr6 100281344 100281647 -88997907 + AluSq SINE Alu 1 302 -11 2311 100 0 3 chr6 100281647 100281958 -88997596 + AluSg SINE Alu 1 310 0 2079 110 20 7 chr6 100282104 100282396 -88997158 - AluSx SINE Alu -16 296 1 2528 55 0 3 chr6 100282414 100282726 -88996828 - AluY SINE Alu 0 311 1 432 306 30 15 chr6 100283256 100283390 -88996164 + MIR SINE MIR 2 137 -125 2277 88 3 3 chr6 100283458 100283754 -88995800 - AluSc SINE Alu -13 296 1 355 241 103 9 chr6 100285501 100285617 -88993937 - L2 LINE L2 0 3313 3187 26 30 0 0 chr6 100285895 100285928 -88993626 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr6 100286309 100286332 -88993222 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2297 67 0 7 chr6 100286334 100286616 -88992938 - AluY SINE Alu -31 280 1 24 67 0 0 chr6 100286920 100286965 -88992589 + AT_rich Low_complexity Low_complexity 1 45 0 470 198 69 17 chr6 100287044 100287160 -88992394 - L1M1 LINE L1 -7429 136 15 2394 88 0 0 chr6 100287160 100287465 -88992089 - AluSq SINE Alu -8 305 1 2115 97 52 3 chr6 100288136 100288425 -88991129 + AluSx SINE Alu 1 303 -9 2078 131 10 0 chr6 100290661 100290959 -88988595 + AluSx SINE Alu 1 301 -11 269 167 0 17 chr6 100291614 100291674 -88987880 + CT-rich Low_complexity Low_complexity 4 62 0 327 252 106 33 chr6 100291746 100291897 -88987657 + MIR3 SINE MIR 20 181 -27 652 265 301 26 chr6 100292163 100292552 -88987002 + L2 LINE L2 2817 3312 -1 21 57 0 0 chr6 100292909 100292944 -88986610 + AT_rich Low_complexity Low_complexity 1 35 0 2280 113 0 0 chr6 100292995 100293287 -88986267 + AluSx SINE Alu 1 292 -20 1534 166 19 73 chr6 100293297 100293611 -88985943 + AluJb SINE Alu 1 297 -15 2287 113 7 0 chr6 100293665 100293975 -88985579 - AluSx SINE Alu 0 312 1 341 309 32 16 chr6 100294663 100294786 -88984768 - L2 LINE L2 0 3313 3189 1843 161 0 20 chr6 100294838 100295143 -88984411 - AluJo SINE Alu -13 299 1 2276 115 7 0 chr6 100295257 100295561 -88983993 - AluSx SINE Alu -4 308 3 2251 105 0 0 chr6 100296151 100296445 -88983109 - AluSg1 SINE Alu -15 294 1 811 300 99 30 chr6 100296479 100296822 -88982732 - L1M4 LINE L1 -743 5403 5085 1549 177 0 83 chr6 100296822 100297161 -88982393 - AluJo SINE Alu -1 311 1 811 300 99 30 chr6 100297161 100297180 -88982374 - L1M4 LINE L1 -1061 5085 5069 1944 149 58 67 chr6 100297180 100297360 -88982194 - MER65A LTR ERV1 0 445 265 2271 101 0 3 chr6 100297360 100297657 -88981897 + AluSc SINE Alu 3 298 -11 1944 149 58 67 chr6 100297657 100297925 -88981629 - MER65A LTR ERV1 -180 265 1 811 300 99 30 chr6 100297925 100298390 -88981164 - L1M4 LINE L1 -1077 5069 4518 1271 271 129 26 chr6 100298557 100299529 -88980025 - L1M4 LINE L1 -816 5330 4259 1496 280 78 49 chr6 100301657 100302807 -88976747 - L1M4 LINE L1 -1986 4160 2970 2113 115 13 0 chr6 100302807 100303119 -88976435 - L1PA16 LINE L1 -12 6154 5839 1496 280 78 49 chr6 100303119 100303214 -88976340 - L1M4 LINE L1 -3176 2970 2879 31 0 0 0 chr6 100304353 100304384 -88975170 + AT_rich Low_complexity Low_complexity 1 31 0 12196 128 20 6 chr6 100304392 100307134 -88972420 - L1PA10 LINE L1 -15 6153 3370 1886 94 0 0 chr6 100307141 100307396 -88972158 - L1PA7 LINE L1 -8 6146 5892 597 158 10 0 chr6 100307396 100307497 -88972057 - FRAM SINE Alu -75 101 1 6061 118 27 30 chr6 100307547 100308332 -88971222 - L1MA4 LINE L1 -6 6294 5508 2571 65 0 3 chr6 100308332 100308639 -88970915 + AluY SINE Alu 1 306 -5 6061 118 27 30 chr6 100308639 100309601 -88969953 - L1MA4 LINE L1 -792 5508 4547 351 0 0 0 chr6 100309653 100309692 -88969862 + (TG)n Simple_repeat Simple_repeat 2 40 0 15826 145 26 32 chr6 100309796 100310978 -88968576 + L1MA3 LINE L1 15 1202 -6522 716 44 0 0 chr6 100310978 100311068 -88968486 + AluY SINE Alu 211 300 -11 15826 145 26 32 chr6 100311068 100313742 -88965812 + L1MA3 LINE L1 1202 3890 -3834 2146 96 7 7 chr6 100313742 100314058 -88965496 + AluSg SINE Alu 1 316 0 15826 145 26 32 chr6 100314058 100314091 -88965463 + L1MA3 LINE L1 3890 3922 -3802 2114 124 13 0 chr6 100314091 100314397 -88965157 - AluSx SINE Alu 0 312 3 15826 145 26 32 chr6 100314397 100316052 -88963502 + L1MA3 LINE L1 3922 5585 -2139 2331 90 0 3 chr6 100316052 100316353 -88963201 + AluY SINE Alu 8 307 -4 15826 145 26 32 chr6 100316353 100318144 -88961410 + L1MA3 LINE L1 5585 7724 0 1786 164 35 40 chr6 100318606 100319034 -88960520 - LTR37A LTR ERV1 0 426 1 1665 143 0 4 chr6 100319703 100319975 -88959579 + L1PA16 LINE L1 5892 6162 -4 27 0 0 0 chr6 100320414 100320441 -88959113 + AT_rich Low_complexity Low_complexity 1 27 0 1850 183 234 13 chr6 100320957 100321411 -88958143 - MER89 LTR ERV1 0 559 6 1678 165 76 61 chr6 100322056 100322516 -88957038 - MER110A LTR ERV1 -1 467 1 1994 152 10 13 chr6 100323885 100324194 -88955360 - AluJb SINE Alu 0 312 5 309 224 10 61 chr6 100324209 100324307 -88955247 + Charlie8 DNA MER1_type 103 195 -2222 2401 90 0 0 chr6 100324657 100324958 -88954596 - AluSx SINE Alu -11 301 1 2287 106 0 0 chr6 100326000 100326302 -88953252 - AluSx SINE Alu -10 302 1 533 212 103 27 chr6 100327375 100327521 -88952033 + MIR SINE MIR 57 213 -49 188 277 21 0 chr6 100327634 100327681 -88951873 + MIR SINE MIR 206 253 -9 1811 141 4 4 chr6 100328064 100328333 -88951221 + AluSg SINE Alu 39 307 -3 2234 180 140 25 chr6 100328960 100329471 -88950083 + LTR65 LTR ERV1 8 598 -71 1917 166 109 3 chr6 100329471 100329670 -88949884 - MSTB LTR MaLR 0 426 250 213 39 0 0 chr6 100329670 100329696 -88949858 + (GA)n Simple_repeat Simple_repeat 1 26 0 1917 166 109 3 chr6 100329696 100329881 -88949673 - MSTB LTR MaLR -176 250 1 2234 180 140 25 chr6 100329881 100329963 -88949591 + LTR65 LTR ERV1 598 669 0 357 82 0 0 chr6 100330131 100330180 -88949374 + (TG)n Simple_repeat Simple_repeat 2 50 0 699 162 0 71 chr6 100330298 100330452 -88949102 + FLAM_C SINE Alu 1 143 0 31 0 0 0 chr6 100330633 100330664 -88948890 + AT_rich Low_complexity Low_complexity 1 31 0 2260 79 20 3 chr6 100331239 100331531 -88948023 - AluSx SINE Alu -15 297 1 306 285 71 123 chr6 100332040 100332535 -88947019 - L1M2 LINE L1 -5914 935 467 879 197 169 20 chr6 100334244 100334498 -88945056 - MER58B DNA MER1_type -8 333 42 365 108 31 15 chr6 100335033 100335098 -88944456 + MER58B DNA MER1_type 276 341 0 2141 94 0 37 chr6 100335620 100335917 -88943637 + AluSx SINE Alu 1 286 -26 1928 119 29 4 chr6 100335926 100336204 -88943350 + AluSx SINE Alu 6 290 -22 225 0 0 0 chr6 100336344 100336369 -88943185 + (TG)n Simple_repeat Simple_repeat 1 25 0 1061 147 147 0 chr6 100336819 100337010 -88942544 + MER20 DNA MER1_type 1 219 0 272 259 0 0 chr6 100337019 100337073 -88942481 + MER58 DNA MER1_type 2 55 -331 343 177 16 0 chr6 100337074 100337136 -88942418 + MER58 DNA MER1_type 2342 2404 -16 489 255 154 27 chr6 100337166 100337354 -88942200 - MIR SINE MIR 0 262 51 1554 162 276 25 chr6 100337926 100338364 -88941190 - LTR10A LTR ERV1 -61 548 1 5568 236 16 26 chr6 100338368 100339873 -88939681 - LTR10A-int LTR ERV1 -4 6645 5156 7097 102 25 31 chr6 100339927 100340311 -88939243 - Harlequin LTR ERV1 -3887 3009 2624 2450 63 3 7 chr6 100340311 100340612 -88938942 + AluSp SINE Alu 1 300 -13 7097 102 25 31 chr6 100340612 100341433 -88938121 - Harlequin LTR ERV1 -4272 2624 1812 334 207 171 0 chr6 100341438 100341520 -88938034 + LTR8 LTR ERV1 158 253 -438 912 76 0 0 chr6 100341522 100341654 -88937900 - LTR10A-int LTR ERV1 -5176 1720 1589 * 5136 92 45 20 chr6 100341633 100342479 -88937075 - LTR10A-int LTR ERV1 -5892 1004 723 255 158 116 95 chr6 100342486 100342581 -88936973 - LTR10A-int LTR ERV1 -5578 1071 975 * 295 243 78 19 chr6 100342573 100342676 -88936878 - LTR10A-int LTR ERV1 -6039 610 502 873 237 82 105 chr6 100342761 100343496 -88936058 - LTR10A-int LTR ERV1 -5931 718 1 1748 177 77 77 chr6 100343501 100344049 -88935505 - LTR10A LTR ERV1 -61 548 1 1906 156 20 0 chr6 100344660 100344955 -88934599 + AluJb SINE Alu 1 301 -11 525 294 130 60 chr6 100345608 100346072 -88933482 - L2 LINE L2 0 3313 2725 2403 105 3 0 chr6 100346072 100346376 -88933178 + AluSx SINE Alu 1 305 -7 525 294 130 60 chr6 100346376 100346581 -88932973 - L2 LINE L2 -588 2725 2536 2472 201 49 9 chr6 100346585 100347137 -88932417 + MER82 DNA MER2_type 79 652 -1 672 294 78 50 chr6 100347140 100347460 -88932094 - L2 LINE L2 -822 2492 2164 654 124 9 19 chr6 100347622 100347727 -88931827 + U6 snRNA snRNA 1 104 -3 2367 152 55 2 chr6 100348351 100348713 -88930841 + MSTB2 LTR MaLR 1 391 -66 2207 99 38 3 chr6 100348713 100349006 -88930548 - AluSg SINE Alu -7 303 1 2367 152 55 2 chr6 100349006 100349077 -88930477 + MSTB2 LTR MaLR 391 457 0 1928 163 0 0 chr6 100349126 100349415 -88930139 + AluJb SINE Alu 3 291 -21 1945 116 0 0 chr6 100349513 100349771 -88929783 - AluSg SINE Alu -14 296 39 1341 177 0 8 chr6 100350264 100350501 -88929053 - MER46A DNA MER2_type 0 236 2 254 293 59 1 chr6 100350521 100350637 -88928917 - MIR SINE MIR -60 148 37 1373 188 77 24 chr6 100350809 100351149 -88928405 - MLT1A2 LTR MaLR -16 358 1 3436 210 111 33 chr6 100351172 100351723 -88927831 - L1MC4 LINE L1 -107 7935 7428 2239 115 0 7 chr6 100351723 100352027 -88927527 - AluSq SINE Alu -11 302 1 3436 210 111 33 chr6 100352027 100352640 -88926914 - L1MC4 LINE L1 -614 7428 6864 189 0 0 0 chr6 100352640 100352661 -88926893 + (TG)n Simple_repeat Simple_repeat 2 22 0 3436 210 111 33 chr6 100352661 100353055 -88926499 - L1MC4 LINE L1 -1178 6864 6166 659 222 50 46 chr6 100353229 100353468 -88926086 - L1MC4 LINE L1 -1903 5905 5666 2339 83 0 10 chr6 100353600 100353902 -88925652 - AluY SINE Alu -12 299 1 1706 162 40 4 chr6 100354154 100354432 -88925122 - AluJb SINE Alu -19 293 6 2435 80 0 0 chr6 100354831 100355132 -88924422 - AluY SINE Alu -10 301 1 22 35 0 0 chr6 100355593 100355622 -88923932 + AT_rich Low_complexity Low_complexity 1 29 0 2231 102 10 10 chr6 100355675 100355978 -88923576 + AluSx SINE Alu 1 303 -9 1500 195 7 17 chr6 100356904 100357201 -88922353 - AluJo SINE Alu -14 298 5 2106 119 13 0 chr6 100357669 100357972 -88921582 + AluSx SINE Alu 1 307 -5 1997 110 55 7 chr6 100359011 100359302 -88920252 + AluSx SINE Alu 1 305 -7 2228 90 0 17 chr6 100359927 100360227 -88919327 - AluSc SINE Alu -14 295 1 378 264 100 36 chr6 100360680 100360820 -88918734 - MIR3 SINE MIR -7 201 53 197 274 106 133 chr6 100361263 100361518 -88918036 - L3 LINE CR1 -322 1255 1008 1719 161 56 38 chr6 100361533 100361875 -88917679 - MER7A DNA MER2_type 0 346 1 337 332 164 13 chr6 100362105 100362337 -88917217 - L3 LINE CR1 -732 845 579 926 186 68 0 chr6 100362366 100362543 -88917011 - MLT1F LTR MaLR -72 470 282 308 327 143 50 chr6 100362543 100362663 -88916891 - L3 LINE CR1 -990 587 480 1722 93 0 4 chr6 100362663 100362914 -88916640 + AluSg SINE Alu 56 305 0 308 327 143 50 chr6 100362914 100363113 -88916441 - L3 LINE CR1 -1097 480 237 1354 159 108 9 chr6 100363233 100363465 -88916089 + AluJo SINE Alu 50 304 -8 1070 173 22 0 chr6 100364117 100364302 -88915252 - MER5A DNA MER1_type 0 189 1 1647 183 83 19 chr6 100364691 100365063 -88914491 - MSTD LTR MaLR 0 396 1 461 264 182 0 chr6 100369223 100369371 -88910183 + MIR SINE MIR 55 229 -33 2049 106 41 0 chr6 100369779 100370071 -88909483 + AluSp SINE Alu 2 305 -8 32 43 0 0 chr6 100370238 100370284 -88909270 + AT_rich Low_complexity Low_complexity 1 46 0 243 0 0 0 chr6 100372455 100372482 -88907072 + (TA)n Simple_repeat Simple_repeat 1 27 0 2333 80 3 3 chr6 100372482 100372781 -88906773 - AluY SINE Alu -12 299 1 2354 97 3 0 chr6 100373207 100373507 -88906047 + AluSp SINE Alu 1 301 -12 2475 48 3 0 chr6 100374418 100374710 -88904844 + AluY SINE Alu 2 294 -17 1219 96 48 0 chr6 100374985 100375152 -88904402 + AluSg/x SINE Alu 133 307 -5 2172 119 0 3 chr6 100376174 100376467 -88903087 + AluSg SINE Alu 1 292 -18 193 213 234 21 chr6 100377563 100377657 -88901897 + MIR SINE MIR 139 252 -10 374 305 30 30 chr6 100378293 100378424 -88901130 + L1MC4 LINE L1 6584 6714 -1328 1761 179 156 21 chr6 100379822 100380325 -88899229 + L1MC4a LINE L1 5789 7806 -2 221 274 0 28 chr6 100380890 100380996 -88898558 + A-rich Low_complexity Low_complexity 2 104 0 2326 88 0 10 chr6 100381226 100381533 -88898021 + AluSg SINE Alu 1 304 -6 21 0 0 0 chr6 100381661 100381682 -88897872 + AT_rich Low_complexity Low_complexity 1 21 0 914 143 0 0 chr6 100381827 100381960 -88897594 - AluSq/x SINE Alu -171 141 9 699 202 8 0 chr6 100381963 100382087 -88897467 - AluJo/FLAM SINE Alu -177 125 1 503 234 52 7 chr6 100382097 100382251 -88897303 + MER106B DNA MER1_type 896 1056 -3 314 290 47 0 chr6 100382405 100382512 -88897042 - MIR3 SINE MIR -16 192 81 5304 140 46 76 chr6 100384493 100384719 -88894835 + L1MA7 LINE L1 4138 4369 -1922 2313 82 10 10 chr6 100384719 100385023 -88894531 - AluSx SINE Alu -8 304 1 5304 140 46 76 chr6 100385023 100385411 -88894143 + L1MA7 LINE L1 4369 4767 -1524 1926 155 3 3 chr6 100385411 100385708 -88893846 + AluSx SINE Alu 1 297 -15 5304 140 46 76 chr6 100385708 100385850 -88893704 + L1MA7 LINE L1 4767 4912 -1379 2414 87 0 0 chr6 100385850 100386148 -88893406 - AluSp SINE Alu -15 298 1 5304 140 46 76 chr6 100386148 100386206 -88893348 + L1MA7 LINE L1 4912 4970 -1321 2173 125 0 0 chr6 100386206 100386503 -88893051 + AluSc SINE Alu 1 297 -12 5304 140 46 76 chr6 100386503 100386957 -88892597 + L1MA7 LINE L1 4970 5436 -855 1916 124 23 0 chr6 100386957 100387256 -88892298 + L1PA10 LINE L1 5860 6165 -3 5304 140 46 76 chr6 100387256 100388183 -88891371 + L1MA7 LINE L1 5436 6285 -6 233 357 0 0 chr6 100388429 100388499 -88891055 + MIR SINE MIR 60 129 -79 317 289 111 39 chr6 100388933 100388951 -88890603 + L2 LINE L2 2704 2719 -595 805 136 0 57 chr6 100388951 100389091 -88890463 + FLAM_C SINE Alu 1 132 -1 317 289 111 39 chr6 100389091 100389153 -88890401 + L2 LINE L2 2719 2775 -539 591 258 82 10 chr6 100389153 100389347 -88890207 - MER3 DNA MER1_type 0 209 2 317 289 111 39 chr6 100389347 100389445 -88890109 + L2 LINE L2 2775 2896 -418 238 250 39 58 chr6 100389529 100389633 -88889921 + L2 LINE L2 3149 3250 -63 651 130 136 19 chr6 100390252 100390406 -88889148 - Charlie4 DNA MER1_type -10 1951 1780 186 356 0 0 chr6 100390574 100390633 -88888921 + L3b LINE CR1 1183 1241 -342 22 70 0 0 chr6 100390947 100390990 -88888564 + AT_rich Low_complexity Low_complexity 1 43 0 2737 194 33 22 chr6 100391407 100391958 -88887596 + MER68 LTR ERV1 6 562 0 21 0 0 0 chr6 100394613 100394634 -88884920 + AT_rich Low_complexity Low_complexity 1 21 0 2031 137 0 26 chr6 100394849 100395162 -88884392 - AluSx SINE Alu -7 305 1 2325 101 0 7 chr6 100395534 100395842 -88883712 + AluSg SINE Alu 3 308 -2 22 35 0 0 chr6 100395932 100395961 -88883593 + AT_rich Low_complexity Low_complexity 1 29 0 188 200 89 0 chr6 100396541 100396586 -88882968 + MIR SINE MIR 21 69 -193 752 178 0 44 chr6 100397792 100397927 -88881627 + AluJo/FLAM SINE Alu 1 129 -173 1799 184 0 0 chr6 100397929 100398261 -88881293 + AluJb SINE Alu 1 332 0 4588 65 5 3 chr6 100398436 100399018 -88880536 + LTR10C LTR ERV1 1 583 -8 2023 116 20 16 chr6 100399345 100399648 -88879906 + AluSg SINE Alu 1 304 -6 1751 176 7 3 chr6 100400358 100400653 -88878901 - AluJo SINE Alu -16 296 1 2294 110 0 0 chr6 100400719 100401019 -88878535 + AluSx SINE Alu 1 300 -12 186 43 0 0 chr6 100401827 100401850 -88877704 + (A)n Simple_repeat Simple_repeat 1 23 0 1786 173 3 0 chr6 100452522 100452823 -88826731 + AluJb SINE Alu 1 302 -10 2211 92 0 3 chr6 100453074 100453366 -88826188 + AluSg SINE Alu 1 291 -19 480 117 0 0 chr6 100455294 100455371 -88824183 + (TCC)n Simple_repeat Simple_repeat 3 79 0 329 297 39 8 chr6 100455532 100455660 -88823894 + MIR3 SINE MIR 30 161 -47 481 288 141 5 chr6 100455731 100455922 -88823632 + MIR SINE MIR 14 230 -32 2003 131 0 0 chr6 100455960 100456242 -88823312 + AluSx SINE Alu 1 282 -30 28 0 0 0 chr6 100456242 100456270 -88823284 + AT_rich Low_complexity Low_complexity 1 28 0 339 346 139 30 chr6 100456671 100456873 -88822681 - L2 LINE L2 0 3272 3049 1800 130 47 7 chr6 100457190 100457490 -88822064 + AluSx SINE Alu 1 312 0 521 134 73 0 chr6 100457496 100457578 -88821976 + AluSg/x SINE Alu 209 296 -16 2242 100 0 3 chr6 100457578 100457888 -88821666 + AluSc SINE Alu 1 309 0 1482 115 0 0 chr6 100458012 100458221 -88821333 + AluSx SINE Alu 1 209 -103 1339 48 0 6 chr6 100458229 100458396 -88821158 - AluY SINE Alu -26 285 120 1680 124 45 10 chr6 100458565 100458855 -88820699 + AluSp SINE Alu 1 300 -13 6679 53 16 65 chr6 100459036 100460780 -88818774 - SVA Other Other -683 1386 3 1103 126 0 0 chr6 100461119 100461278 -88818276 + AluSx SINE Alu 5 163 -149 754 203 0 0 chr6 100461589 100461722 -88817832 + FLAM_C SINE Alu 1 133 0 409 344 87 80 chr6 100461799 100462235 -88817319 + L2 LINE L2 2823 3261 -11 2169 93 7 0 chr6 100462400 100462691 -88816863 + AluSx SINE Alu 1 293 -19 235 217 17 17 chr6 100462780 100462840 -88816714 + (TA)n Simple_repeat Simple_repeat 2 61 0 439 216 45 0 chr6 100462840 100462951 -88816603 - L1MC4a LINE L1 -464 7344 7229 324 278 6 41 chr6 100462995 100463164 -88816390 - L1MC5 LINE L1 -194 7767 7605 2232 104 7 0 chr6 100463322 100463629 -88815925 + AluSc SINE Alu 1 309 0 2026 127 0 0 chr6 100463751 100464050 -88815504 + AluSx SINE Alu 14 312 0 2280 97 3 0 chr6 100464731 100465042 -88814512 - AluSx SINE Alu 0 312 1 317 253 222 0 chr6 100466332 100466431 -88813123 + MIR SINE MIR 28 148 -114 209 160 0 20 chr6 100466437 100466487 -88813067 + C-rich Low_complexity Low_complexity 2 50 0 1776 172 3 0 chr6 100466817 100467125 -88812429 - AluSx SINE Alu -3 309 1 1907 134 7 0 chr6 100467313 100467604 -88811950 - AluSp SINE Alu -20 293 1 281 340 166 41 chr6 100467815 100468206 -88811348 + L2 LINE L2 2825 3264 -8 692 129 45 38 chr6 100468214 100468346 -88811208 + FLAM_C SINE Alu 1 133 0 2108 119 0 0 chr6 100468503 100468797 -88810757 - AluSx SINE Alu -18 294 1 36 0 0 0 chr6 100468835 100468871 -88810683 + AT_rich Low_complexity Low_complexity 1 36 0 274 229 0 0 chr6 100469062 100469110 -88810444 + MIR SINE MIR 29 76 -186 6992 163 13 76 chr6 100469155 100470551 -88809003 + SVA Other Other 79 1386 0 1727 151 3 33 chr6 100470797 100470939 -88808615 + AluJb SINE Alu 1 146 -166 2181 88 0 7 chr6 100470939 100471244 -88808310 + AluSg SINE Alu 7 310 0 1727 151 3 33 chr6 100471244 100471406 -88808148 + AluJb SINE Alu 146 296 -16 359 119 179 0 chr6 100471447 100471514 -88808040 - LTR16A LTR ERVL -49 401 323 309 271 104 0 chr6 100471516 100471612 -88807942 + MER81 DNA DNA 8 113 -1 613 255 43 0 chr6 100471702 100471843 -88807711 + MIR SINE MIR 112 258 -4 2219 110 0 0 chr6 100472166 100472474 -88807080 - AluSx SINE Alu -4 308 1 1656 159 0 73 chr6 100472477 100472804 -88806750 - AluJo SINE Alu -9 303 1 2230 89 7 0 chr6 100472806 100473109 -88806445 - AluSp SINE Alu -8 305 1 2179 102 0 0 chr6 100473618 100473912 -88805642 - AluSg SINE Alu -16 294 1 2001 115 0 14 chr6 100474366 100474502 -88805052 + AluSq SINE Alu 1 137 -176 2220 99 0 0 chr6 100474502 100474806 -88804748 + AluSc SINE Alu 1 304 -5 2001 115 0 14 chr6 100474806 100474964 -88804590 + AluSq SINE Alu 137 291 -22 24 0 0 0 chr6 100474964 100474988 -88804566 + AT_rich Low_complexity Low_complexity 1 24 0 429 305 116 52 chr6 100475562 100475795 -88803759 + L2 LINE L2 2507 2754 -560 942 147 12 18 chr6 100476099 100476262 -88803292 + AluJb SINE Alu 136 297 -15 2094 107 0 19 chr6 100476262 100476579 -88802975 + AluSx SINE Alu 1 311 -1 1836 121 3 44 chr6 100477809 100478147 -88801407 + AluSx SINE Alu 1 326 0 2151 131 0 0 chr6 100479068 100479380 -88800174 + AluSx SINE Alu 1 312 0 1738 156 40 3 chr6 100479442 100479743 -88799811 + AluSx SINE Alu 1 312 0 3735 186 31 77 chr6 100479779 100480528 -88799026 - L1M4 LINE L1 -4928 1614 922 927 116 0 0 chr6 100480528 100480834 -88798720 + AluSx SINE Alu 1 306 0 3735 186 31 77 chr6 100480834 100481106 -88798448 - L1M4 LINE L1 -5620 922 639 4424 117 48 13 chr6 100481107 100481792 -88797762 - MER50 LTR ERV1 -23 711 3 2574 235 6 80 chr6 100481795 100482507 -88797047 - L1M4 LINE L1 -5883 659 1 2009 127 10 0 chr6 100483204 100483495 -88796059 - AluSx SINE Alu -18 294 1 260 327 9 64 chr6 100483671 100483781 -88795773 + MIR SINE MIR 48 151 -111 1977 104 0 11 chr6 100483924 100484192 -88795362 + AluSg SINE Alu 45 309 -1 831 245 52 26 chr6 100485065 100485298 -88794256 - MIR SINE MIR -21 241 3 224 350 0 92 chr6 100485322 100485442 -88794112 - MIR SINE MIR -63 145 37 2467 87 3 0 chr6 100485514 100485824 -88793730 - AluSp SINE Alu -2 311 1 1858 113 0 0 chr6 100485983 100486247 -88793307 + AluSq SINE Alu 48 311 0 748 268 80 88 chr6 100486380 100486891 -88792663 + MLT1J LTR MaLR 5 511 0 504 79 0 0 chr6 100487417 100487480 -88792074 + FRAM SINE Alu 33 95 -81 367 232 90 73 chr6 100488169 100488256 -88791298 + L2 LINE L2 2926 3010 -262 4759 159 33 10 chr6 100488256 100489022 -88790532 - LTR39 LTR ERV1 0 783 1 367 232 90 73 chr6 100489022 100489111 -88790443 + L2 LINE L2 3010 3105 -167 297 226 132 9 chr6 100489355 100489461 -88790093 + MIR SINE MIR 96 214 -48 1927 119 4 0 chr6 100489509 100489769 -88789785 + AluSx SINE Alu 1 261 -51 193 179 103 0 chr6 100490046 100490085 -88789469 + MIR3 SINE MIR 117 159 -49 405 257 44 35 chr6 100490125 100490224 -88789330 + L2 LINE L2 3200 3302 -11 2432 51 3 3 chr6 100490224 100490518 -88789036 + AluY SINE Alu 1 294 -17 405 257 44 35 chr6 100490518 100490531 -88789023 + L2 LINE L2 3302 3313 0 1590 144 50 0 chr6 100490640 100490917 -88788637 + L1MA9 LINE L1 6017 6307 -5 2234 89 10 23 chr6 100491562 100491864 -88787690 + AluSq SINE Alu 1 298 -15 226 264 124 97 chr6 100492704 100492962 -88786592 - L2 LINE L2 -89 3183 2919 196 294 50 42 chr6 100493285 100493404 -88786150 + L2 LINE L2 2736 2855 -459 376 253 0 12 chr6 100493740 100493823 -88785731 - L2 LINE L2 0 3313 3232 2257 94 24 3 chr6 100494761 100495059 -88784495 + AluSx SINE Alu 9 312 0 265 216 57 125 chr6 100495068 100495156 -88784398 - Charlie1 DNA MER1_type -2678 83 2 551 289 72 5 chr6 100495395 100495589 -88783965 + MIR SINE MIR 56 262 0 2161 113 3 10 chr6 100495935 100496237 -88783317 - AluSx SINE Alu -12 300 1 198 0 0 0 chr6 100496308 100496330 -88783224 + (A)n Simple_repeat Simple_repeat 1 22 0 2756 252 90 49 chr6 100498141 100498215 -88781339 + L1ME LINE L1 6 75 -6005 333 0 0 0 chr6 100498215 100498252 -88781302 + (CA)n Simple_repeat Simple_repeat 2 38 0 2756 252 90 49 chr6 100498252 100498325 -88781229 + L1ME LINE L1 75 144 -5936 1505 178 0 48 chr6 100498325 100498618 -88780936 + AluJo SINE Alu 14 292 -20 197 33 33 0 chr6 100498621 100498651 -88780903 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2756 252 90 49 chr6 100498651 100499456 -88780098 + L1ME LINE L1 145 915 -5165 2311 88 3 28 chr6 100499456 100499775 -88779779 + AluSq SINE Alu 3 313 0 2756 252 90 49 chr6 100499775 100500154 -88779400 + L1ME LINE L1 915 1277 -4803 2281 102 3 0 chr6 100500154 100500449 -88779105 - AluSq SINE Alu -17 296 1 2756 252 90 49 chr6 100500449 100500836 -88778718 + L1ME LINE L1 1277 1780 -4300 683 203 198 0 chr6 100500889 100501076 -88778478 - L1ME3 LINE L1 -1 6161 5938 917 296 21 0 chr6 100502006 100502293 -88777261 + L1ME3A LINE L1 5670 5962 -208 356 264 0 22 chr6 100502412 100502503 -88777051 + L1ME LINE L1 5477 5565 -556 241 183 61 61 chr6 100502513 100502595 -88776959 - L1ME3A LINE L1 -179 5983 5902 * 346 264 86 29 chr6 100502589 100502729 -88776825 + L1ME LINE L1 5572 5719 -402 2070 122 7 0 chr6 100503025 100503312 -88776242 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr6 100503312 100503334 -88776220 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr6 100503767 100503795 -88775759 + (CA)n Simple_repeat Simple_repeat 1 28 0 2150 96 3 20 chr6 100504167 100504469 -88775085 - AluSx SINE Alu -15 297 1 272 349 48 58 chr6 100504879 100505068 -88774486 + L2 LINE L2 3076 3262 -10 446 298 53 34 chr6 100505106 100505314 -88774240 - MIR SINE MIR -32 230 19 2239 109 3 0 chr6 100505833 100506127 -88773427 + AluSx SINE Alu 1 295 -17 28 0 0 0 chr6 100506127 100506155 -88773399 + AT_rich Low_complexity Low_complexity 1 28 0 5264 181 66 46 chr6 100506431 100507532 -88772022 - Charlie1a DNA MER1_type -1527 1234 105 2375 100 0 0 chr6 100507532 100507831 -88771723 + AluSg SINE Alu 1 299 -11 5264 181 66 46 chr6 100507831 100507936 -88771618 - Charlie1a DNA MER1_type -2656 105 4 1360 162 14 5 chr6 100507961 100508183 -88771371 - AluJo SINE Alu -4 308 85 306 260 62 21 chr6 100508518 100508614 -88770940 - MIR SINE MIR -46 216 117 2157 78 6 56 chr6 100508617 100508937 -88770617 + AluSq SINE Alu 1 304 -9 1472 174 43 3 chr6 100509761 100510065 -88769489 + MER33 DNA MER1_type 8 323 -1 230 290 48 55 chr6 100511648 100511793 -88767761 - MIR SINE MIR -61 201 58 482 295 90 25 chr6 100512147 100512391 -88767163 + MIR SINE MIR 1 260 -2 2211 108 0 0 chr6 100512491 100512786 -88766768 + AluSx SINE Alu 2 296 -16 224 347 97 8 chr6 100513515 100513639 -88765915 - L2 LINE L2 0 3272 3138 196 229 66 0 chr6 100513671 100513732 -88765822 + MIR SINE MIR 26 90 -118 225 276 52 0 chr6 100514267 100514325 -88765229 - Charlie8 DNA MER1_type -1000 1417 1357 2282 95 3 3 chr6 100514412 100514707 -88764847 - AluSq SINE Alu -16 297 3 291 282 45 38 chr6 100515049 100515204 -88764350 + MLT1L LTR MaLR 99 318 -297 642 119 65 129 chr6 100516412 100516613 -88762941 - MER53 DNA DNA 0 189 2 2160 122 0 3 chr6 100516720 100517014 -88762540 - AluSq SINE Alu -20 293 1 2109 122 17 0 chr6 100517179 100517475 -88762079 + AluSx SINE Alu 1 301 -11 198 0 0 0 chr6 100517720 100517742 -88761812 + (A)n Simple_repeat Simple_repeat 1 22 0 1992 169 0 0 chr6 100518163 100518464 -88761090 + AluJb SINE Alu 1 301 -11 189 320 40 20 chr6 100518578 100518678 -88760876 + MIR SINE MIR 16 117 -91 183 100 0 0 chr6 100518807 100518837 -88760717 + (CAT)n Simple_repeat Simple_repeat 3 32 0 2027 105 7 4 chr6 100519368 100519674 -88759880 + AluSq SINE Alu 7 313 0 2009 119 0 7 chr6 100519684 100520000 -88759554 + AluSq SINE Alu 1 314 0 458 284 39 7 chr6 100520137 100520313 -88759241 + L1MC4a LINE L1 5665 5849 -335 463 270 243 7 chr6 100520323 100520471 -88759083 - MER91A DNA MER1_type -13 183 1 280 318 45 0 chr6 100520549 100520725 -88758829 + L1ME4a LINE L1 5938 6121 0 335 268 191 38 chr6 100521269 100521426 -88758128 + MIR SINE MIR 70 250 -12 684 238 198 13 chr6 100521662 100521965 -88757589 - L1ME4a LINE L1 -1 6120 5762 399 316 0 0 chr6 100521965 100522060 -88757494 - L2 LINE L2 -19 3294 3200 265 293 133 40 chr6 100522055 100522205 -88757349 - L2 LINE L2 -1434 1880 1717 * 354 354 81 35 chr6 100523081 100523598 -88755956 + L1MEd LINE L1 43 583 -5536 241 212 53 88 chr6 100523600 100523713 -88755841 + L1MEd LINE L1 634 742 -5377 214 222 22 0 chr6 100525331 100525376 -88754178 - L2 LINE L2 -10 3303 3258 196 333 162 27 chr6 100525631 100525710 -88753844 - L2 LINE L2 -20 3293 3193 648 49 0 12 chr6 100525710 100525791 -88753763 - MADE1 DNA Mariner 0 80 1 196 333 162 27 chr6 100525791 100525822 -88753732 - L2 LINE L2 -120 3193 3168 292 261 35 49 chr6 100525844 100525986 -88753568 + L1ME1 LINE L1 6007 6146 -20 522 165 96 160 chr6 100526016 100526204 -88753350 + MER69A DNA AcHobo 1 176 -1 1803 184 21 31 chr6 100526361 100526746 -88752808 + LTR52 LTR ERVL 3 383 -38 1983 165 3 0 chr6 100527376 100527691 -88751863 - 7SLRNA srpRNA srpRNA -4 316 1 2496 178 49 155 chr6 100527699 100528625 -88750929 + L1MC5 LINE L1 6621 7644 -317 2442 73 0 13 chr6 100528625 100528940 -88750614 - AluY SINE Alu 0 311 1 2496 178 49 155 chr6 100528940 100529065 -88750489 + L1MC5 LINE L1 7644 7543 -418 2350 65 10 3 chr6 100529065 100529358 -88750196 + AluY SINE Alu 1 295 -16 2496 178 49 155 chr6 100529358 100529455 -88750099 + L1MC5 LINE L1 7542 7648 -313 23 0 0 0 chr6 100529591 100529614 -88749940 + AT_rich Low_complexity Low_complexity 1 23 0 22 88 0 0 chr6 100529716 100529773 -88749781 + AT_rich Low_complexity Low_complexity 1 57 0 774 247 131 19 chr6 100529788 100530148 -88749406 + L1ME LINE L1 4497 4896 -1250 338 281 124 5 chr6 100530863 100531073 -88748481 + L1ME LINE L1 5317 5551 -570 935 181 156 22 chr6 100531080 100531350 -88748204 + LTR8A LTR ERV1 311 616 -111 2073 97 0 4 chr6 100531515 100531782 -88747772 + AluSq SINE Alu 42 307 -6 1398 208 135 54 chr6 100532021 100532084 -88747470 - MLT1D LTR MaLR 0 505 449 2134 140 0 0 chr6 100532084 100532384 -88747170 + AluSx SINE Alu 1 300 -12 2189 92 0 30 chr6 100532388 100532691 -88746863 + AluSc SINE Alu 1 294 -15 1398 208 135 54 chr6 100532691 100533088 -88746466 - MLT1D LTR MaLR -58 447 2 705 285 113 57 chr6 100533260 100534512 -88745042 + HAL1 LINE L1 259 1665 -842 * 6149 140 24 30 chr6 100534460 100535380 -88744174 - L1MC2 LINE L1 -5 6339 5427 1957 143 16 3 chr6 100535380 100535688 -88743866 - AluJb SINE Alu 0 312 1 6149 140 24 30 chr6 100535688 100535926 -88743628 - L1MC2 LINE L1 -917 5427 5189 778 259 74 5 chr6 100535927 100536143 -88743411 + HAL1 LINE L1 1625 1855 -652 300 250 31 23 chr6 100536212 100536340 -88743214 + Charlie7 DNA MER1_type 2432 2560 -52 2146 106 0 7 chr6 100536381 100536688 -88742866 + AluSx SINE Alu 3 307 0 883 268 110 43 chr6 100536720 100537331 -88742223 + HAL1 LINE L1 1842 2493 -14 242 209 130 9 chr6 100537358 100537473 -88742081 + L1ME LINE L1 5767 5895 -226 2065 141 0 10 chr6 100537566 100537864 -88741690 + AluSx SINE Alu 1 295 -17 1860 181 0 0 chr6 100537870 100538168 -88741386 + AluSx SINE Alu 3 300 -12 288 70 0 0 chr6 100538776 100538819 -88740735 + (CA)n Simple_repeat Simple_repeat 2 44 0 583 179 20 17 chr6 100539062 100539188 -88740366 - MIR SINE MIR -61 147 39 208 366 73 8 chr6 100539532 100539655 -88739899 + L2 LINE L2 3175 3305 -8 324 202 12 60 chr6 100539770 100539854 -88739700 - MER116 DNA Mariner 0 80 1 2146 113 0 0 chr6 100539866 100540150 -88739404 + AluSx SINE Alu 1 284 -28 195 42 0 0 chr6 100540153 100540177 -88739377 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 203 363 0 0 chr6 100540182 100540262 -88739292 + L3b LINE CR1 1383 1462 -121 308 95 0 0 chr6 100540294 100540336 -88739218 - MADE1 DNA Mariner -38 42 1 21 0 0 0 chr6 100541151 100541172 -88738382 + AT_rich Low_complexity Low_complexity 1 21 0 501 288 87 104 chr6 100542161 100542359 -88737195 - L2 LINE L2 -571 2743 2543 1837 160 0 3 chr6 100542359 100542659 -88736895 + AluJb SINE Alu 1 299 -13 501 288 87 104 chr6 100542659 100542972 -88736582 - L2 LINE L2 -771 2543 2226 936 203 0 0 chr6 100542972 100543125 -88736429 + FRAM SINE Alu 1 153 -13 1044 109 0 22 chr6 100543127 100543489 -88736065 + (GGA)n Simple_repeat Simple_repeat 1 353 0 501 288 87 104 chr6 100543489 100543879 -88735675 - L2 LINE L2 -1089 2225 1851 2533 52 0 10 chr6 100544169 100544479 -88735075 + AluY SINE Alu 1 307 -4 230 318 0 0 chr6 100544542 100544608 -88734946 + A-rich Low_complexity Low_complexity 3 68 0 1566 173 35 0 chr6 100545308 100545568 -88733986 + AluJb SINE Alu 26 294 -18 1013 107 0 0 chr6 100545815 100545946 -88733608 + AluSq/x SINE Alu 1 131 -181 2129 102 42 0 chr6 100546284 100546567 -88732987 - AluSx SINE Alu -17 295 1 21 0 0 0 chr6 100546619 100546640 -88732914 + AT_rich Low_complexity Low_complexity 1 21 0 881 90 0 0 chr6 100547055 100547166 -88732388 + HY1 scRNA scRNA 1 111 -1 369 221 207 21 chr6 100547658 100547803 -88731751 - MIR3 SINE MIR -3 205 34 294 95 0 0 chr6 100548315 100548357 -88731197 + (ATG)n Simple_repeat Simple_repeat 3 44 0 2118 130 0 0 chr6 100548406 100548707 -88730847 - AluSx SINE Alu -11 301 1 2366 71 0 17 chr6 100549318 100549649 -88729905 - AluSx SINE Alu 0 326 1 2340 80 3 13 chr6 100549928 100550227 -88729327 + AluSp SINE Alu 1 296 -17 2317 112 3 0 chr6 100550255 100550560 -88728994 + AluSp SINE Alu 1 306 -7 260 278 69 0 chr6 100550575 100550647 -88728907 - MIR SINE MIR -3 259 183 189 367 0 25 chr6 100551705 100551784 -88727770 + L2 LINE L2 3196 3272 0 186 180 66 49 chr6 100551964 100552025 -88727529 + L2 LINE L2 2322 2383 -931 2364 97 0 25 chr6 100552065 100552412 -88727142 + AluSx SINE Alu 1 339 0 335 284 18 21 chr6 100552412 100552547 -88727007 - MIR SINE MIR -73 135 2 233 303 165 0 chr6 100552547 100552646 -88726908 + L2 LINE L2 3109 3225 -47 1785 163 14 0 chr6 100552917 100553205 -88726349 + AluJb SINE Alu 9 300 -12 433 268 62 45 chr6 100553655 100553834 -88725720 - MIR SINE MIR -44 218 37 580 200 17 33 chr6 100555059 100555179 -88724375 - MLT1H LTR MaLR 0 549 432 1121 235 30 11 chr6 100555263 100555531 -88724023 - MLT1H LTR MaLR -263 286 14 2107 124 3 0 chr6 100556903 100557185 -88722369 + AluSq SINE Alu 6 288 -25 186 43 0 0 chr6 100557189 100557212 -88722342 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2235 111 0 0 chr6 100557526 100557824 -88721730 + AluSx SINE Alu 1 298 -14 272 235 235 0 chr6 100558240 100558338 -88721216 - MIR3 SINE MIR -6 202 82 2334 98 0 22 chr6 100560069 100560386 -88719168 + AluSq SINE Alu 1 310 -3 27 29 0 0 chr6 100560853 100560887 -88718667 + AT_rich Low_complexity Low_complexity 1 34 0 2398 87 3 0 chr6 100564045 100564354 -88715200 - AluSg SINE Alu 0 310 1 2448 81 0 0 chr6 100564357 100564654 -88714900 - AluSq SINE Alu -7 306 10 2139 89 3 10 chr6 100565571 100565862 -88713692 + AluSc SINE Alu 1 289 -20 1044 149 154 5 chr6 100566255 100566456 -88713098 - MER46A DNA MER2_type -5 231 1 2288 114 0 0 chr6 100566625 100566932 -88712622 + AluSx SINE Alu 1 307 -5 1195 135 0 0 chr6 100566932 100567102 -88712452 + AluSp SINE Alu 134 303 -10 333 205 51 26 chr6 100567442 100567520 -88712034 + MLT1J1 LTR MaLR 246 325 -121 2010 139 17 0 chr6 100568101 100568389 -88711165 - AluSx SINE Alu -19 293 1 1163 262 258 28 chr6 100568775 100569710 -88709844 - L2 LINE L2 -239 3074 1880 480 256 201 26 chr6 100570140 100570374 -88709180 - L2 LINE L2 -1483 1831 1557 252 219 95 67 chr6 100570531 100570636 -88708918 + MER5B DNA MER1_type 2 109 -69 1212 93 0 0 chr6 100571078 100571229 -88708325 - AluSg/x SINE Alu -6 304 154 1228 177 23 5 chr6 100571241 100571456 -88708098 + MER20 DNA MER1_type 1 219 0 2308 76 3 3 chr6 100571484 100571774 -88707780 + AluSc SINE Alu 1 290 -19 2167 91 34 7 chr6 100571951 100572248 -88707306 + AluSq SINE Alu 1 305 -8 21 0 0 0 chr6 100572543 100572564 -88706990 + AT_rich Low_complexity Low_complexity 1 21 0 1102 53 8 0 chr6 100572564 100572695 -88706859 - AluY SINE Alu -178 133 2 192 120 0 0 chr6 100574019 100574044 -88705510 + MIR SINE MIR 38 62 -146 2238 62 52 7 chr6 100574109 100574398 -88705156 + AluY SINE Alu 1 302 -9 2048 103 32 4 chr6 100574401 100574523 -88705031 + AluSc SINE Alu 1 118 -191 282 29 0 0 chr6 100574523 100574558 -88704996 + (CA)n Simple_repeat Simple_repeat 2 36 0 2048 103 32 4 chr6 100574558 100574716 -88704838 + AluSc SINE Alu 118 289 -20 2420 80 0 13 chr6 100574721 100575035 -88704519 + AluY SINE Alu 1 310 -1 22 56 0 0 chr6 100575304 100575340 -88704214 + AT_rich Low_complexity Low_complexity 1 36 0 2180 70 46 26 chr6 100576156 100576458 -88703096 + AluSq SINE Alu 1 308 -5 2385 95 3 0 chr6 100576783 100577088 -88702466 + AluSp SINE Alu 2 307 -6 1205 156 143 8 chr6 100577184 100577454 -88702100 + AluJb SINE Alu 7 309 0 2141 87 56 0 chr6 100578213 100578500 -88701054 - AluY SINE Alu -8 303 1 22 0 0 0 chr6 100578702 100578724 -88700830 + AT_rich Low_complexity Low_complexity 1 22 0 2174 111 0 14 chr6 100578974 100579271 -88700283 - AluSx SINE Alu -19 293 1 761 175 0 36 chr6 100580737 100580874 -88698680 + FLAM_C SINE Alu 1 132 -1 2132 130 7 0 chr6 100581580 100581881 -88697673 - AluSx SINE Alu -9 303 1 2234 207 62 54 chr6 100582299 100582971 -88696583 - L1ME1 LINE L1 -9 6157 5480 2132 120 0 3 chr6 100583858 100584157 -88695397 + AluSq SINE Alu 1 298 -15 2328 97 3 0 chr6 100584689 100584989 -88694565 + AluSx SINE Alu 1 301 -11 1036 101 7 0 chr6 100585186 100585324 -88694230 + AluSp SINE Alu 1 139 -174 466 52 0 0 chr6 100585324 100585382 -88694172 + AluSp/q SINE Alu 243 300 -13 1193 191 88 44 chr6 100585791 100586053 -88693501 + AluJo SINE Alu 1 250 -52 2175 115 0 10 chr6 100586053 100586357 -88693197 - AluSx SINE Alu -11 301 1 1980 122 41 3 chr6 100586357 100586651 -88692903 - AluSx SINE Alu -7 305 1 21 0 0 0 chr6 100586682 100586703 -88692851 + AT_rich Low_complexity Low_complexity 1 21 0 1364 179 0 91 chr6 100587155 100587314 -88692240 + AluJo SINE Alu 1 118 -194 1782 170 7 3 chr6 100587314 100587603 -88691951 + AluJb SINE Alu 11 300 -12 1364 179 0 91 chr6 100587603 100587762 -88691792 + AluJo SINE Alu 118 290 -22 414 268 127 89 chr6 100588350 100588579 -88690975 + MIR3 SINE MIR 12 232 -23 363 297 19 45 chr6 100590113 100590268 -88689286 + MIR SINE MIR 97 247 -15 2277 89 0 0 chr6 100590761 100591054 -88688500 + AluY SINE Alu 3 295 -16 2267 97 3 0 chr6 100591986 100592275 -88687279 - AluSq SINE Alu -23 290 1 277 307 59 0 chr6 100592470 100592571 -88686983 + L1M4 LINE L1 4084 4190 -1956 1835 137 31 7 chr6 100592647 100592939 -88686615 + AluJb SINE Alu 1 299 -13 2300 96 7 0 chr6 100593234 100593535 -88686019 - AluSp SINE Alu -10 303 1 1375 171 4 12 chr6 100593831 100594082 -88685472 + AluJo SINE Alu 59 307 -5 1902 136 0 32 chr6 100594101 100594435 -88685119 + AluJb SINE Alu 11 334 0 233 29 0 29 chr6 100596171 100596206 -88683348 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2264 59 3 24 chr6 100597051 100597516 -88682038 + AluY SINE Alu 1 459 0 2219 93 7 23 chr6 100597958 100598259 -88681295 + AluSq SINE Alu 1 296 -17 2054 124 10 0 chr6 100598319 100598609 -88680945 - AluSg SINE Alu -17 293 1 2168 108 3 10 chr6 100598628 100598925 -88680629 - AluSx SINE Alu -17 295 1 2204 111 0 0 chr6 100598991 100599288 -88680266 + AluSx SINE Alu 1 297 -15 1133 286 79 40 chr6 100599288 100599343 -88680211 - LTR67 LTR ERVL -12 545 494 2243 119 0 3 chr6 100599343 100599653 -88679901 + AluSx SINE Alu 3 311 -1 1133 286 79 40 chr6 100599653 100600118 -88679436 - LTR67 LTR ERVL -63 494 5 2358 72 7 23 chr6 100600771 100601075 -88678479 + AluSp SINE Alu 1 299 -14 316 335 28 6 chr6 100601142 100601318 -88678236 - L1ME4a LINE L1 -219 5902 5723 2017 115 19 32 chr6 100603277 100603591 -88675963 + AluSg SINE Alu 1 310 0 22 35 0 0 chr6 100603756 100603785 -88675769 + AT_rich Low_complexity Low_complexity 1 29 0 1589 168 38 28 chr6 100603901 100604192 -88675362 + AluJo SINE Alu 1 294 -18 784 254 102 109 chr6 100604434 100604568 -88674986 - L1ME4a LINE L1 0 6121 5988 667 173 0 0 chr6 100604568 100604672 -88674882 - U13 snRNA snRNA 0 104 1 784 254 102 109 chr6 100604672 100604700 -88674854 - L1ME4a LINE L1 -133 5988 5961 312 27 0 0 chr6 100604700 100604737 -88674817 + (CA)n Simple_repeat Simple_repeat 2 38 0 784 254 102 109 chr6 100604737 100604861 -88674693 - L1ME4a LINE L1 -160 5961 5838 2082 152 0 0 chr6 100604861 100605158 -88674396 - AluSx SINE Alu -15 297 1 784 254 102 109 chr6 100605158 100605669 -88673885 - L1ME4a LINE L1 -283 5838 5325 548 227 157 5 chr6 100606337 100606522 -88673032 - MIR SINE MIR -14 248 36 783 191 11 71 chr6 100606943 100607019 -88672535 - MIR SINE MIR -46 216 137 1510 188 0 32 chr6 100607019 100607301 -88672253 + AluJo SINE Alu 38 310 -2 783 191 11 71 chr6 100607301 100607407 -88672147 - MIR SINE MIR -125 137 45 264 197 28 26 chr6 100607541 100607633 -88671921 - Charlie8 DNA MER1_type -1001 1416 1349 22 0 0 0 chr6 100608566 100608588 -88670966 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 100608628 100608651 -88670903 + AT_rich Low_complexity Low_complexity 1 23 0 707 160 0 0 chr6 100608651 100608782 -88670772 - L1MA7 LINE L1 -6 6285 6155 1884 182 38 59 chr6 100608789 100608819 -88670735 - Charlie1b DNA MER1_type -2246 515 486 2388 100 3 0 chr6 100608819 100609130 -88670424 - AluSp SINE Alu -1 312 1 2244 109 3 0 chr6 100609130 100609433 -88670121 - AluSq SINE Alu -9 304 1 1591 203 4 0 chr6 100609441 100609749 -88669805 - AluJb SINE Alu 0 309 1 1884 182 38 59 chr6 100609749 100610184 -88669370 - Charlie1b DNA MER1_type -2281 480 49 510 305 60 6 chr6 100610299 100610466 -88669088 + MIR SINE MIR 15 190 -72 1137 224 204 10 chr6 100610467 100610865 -88668689 + MER113 DNA MER1_type? 2 476 -45 211 236 18 0 chr6 100610909 100610964 -88668590 + MIR SINE MIR 187 242 -20 902 188 164 5 chr6 100611088 100611301 -88668253 + MIR SINE MIR 14 260 -2 422 174 194 0 chr6 100611374 100611529 -88668025 - MER5C DNA MER1_type -6 318 134 1202 181 108 66 chr6 100611555 100611843 -88667711 + AluSx SINE Alu 1 300 -2 270 98 0 0 chr6 100612057 100612098 -88667456 + MADE1 DNA Mariner 40 80 0 2183 142 0 0 chr6 100612219 100612528 -88667026 - AluSx SINE Alu -3 309 1 2305 103 0 3 chr6 100612600 100612902 -88666652 - AluSx SINE Alu -5 307 7 273 247 41 14 chr6 100613276 100613349 -88666205 + MER5A DNA MER1_type 115 189 0 217 283 208 8 chr6 100613489 100613609 -88665945 + MIR SINE MIR 57 200 -62 265 83 0 0 chr6 100613649 100613685 -88665869 - MADE1 DNA Mariner 0 80 45 361 289 144 12 chr6 100613783 100613956 -88665598 + L2 LINE L2 3068 3263 -9 2458 90 3 0 chr6 100615672 100615982 -88663572 - AluSp SINE Alu -2 311 1 2410 85 3 6 chr6 100616010 100616327 -88663227 - L1PA5 LINE L1 -4 6150 5835 1959 236 43 48 chr6 100616431 100616795 -88662759 - MLT1E3 LTR MaLR -27 597 236 1887 118 30 56 chr6 100616795 100617100 -88662454 + AluSq SINE Alu 1 297 -16 1959 236 43 48 chr6 100617100 100617333 -88662221 - MLT1E3 LTR MaLR -388 236 3 311 325 82 53 chr6 100617337 100617753 -88661801 + HERV16 LTR ERVL 1 428 -4568 3015 331 62 25 chr6 100617770 100619373 -88660181 - ERVL LTR ERVL -2761 3003 1341 1956 125 21 3 chr6 100619555 100619842 -88659712 + AluSx SINE Alu 2 293 -19 497 349 61 56 chr6 100619895 100620502 -88659052 - ERVL LTR ERVL -4018 978 369 1921 151 6 22 chr6 100621321 100621638 -88657916 + AluJo SINE Alu 1 312 0 2113 107 0 23 chr6 100621670 100621969 -88657585 + AluSp SINE Alu 3 294 -19 1795 115 97 7 chr6 100622424 100622693 -88656861 + AluSx SINE Alu 1 293 -19 309 294 28 9 chr6 100622761 100622870 -88656684 + Charlie8 DNA MER1_type 61 171 -2246 182 183 280 65 chr6 100622937 100623030 -88656524 - MER5A DNA MER1_type -53 136 24 2125 104 26 13 chr6 100623135 100623444 -88656110 + AluSq SINE Alu 1 313 0 303 81 0 0 chr6 100623617 100623654 -88655900 + U2 snRNA snRNA 1 37 -151 1964 148 7 0 chr6 100623896 100624193 -88655361 + AluSx SINE Alu 1 299 -13 240 191 32 16 chr6 100624257 100624320 -88655234 + Charlie8 DNA MER1_type 70 133 -2284 2225 118 10 0 chr6 100624367 100624671 -88654883 + AluSx SINE Alu 1 307 -5 234 291 218 31 chr6 100624698 100625052 -88654502 - L2 LINE L2 -1047 2267 1848 409 237 58 43 chr6 100625501 100625640 -88653914 - MIR SINE MIR -75 187 47 2268 95 7 3 chr6 100625735 100626029 -88653525 + AluSx SINE Alu 1 295 -17 2199 108 0 3 chr6 100626152 100626447 -88653107 + AluY SINE Alu 1 294 -17 2315 88 10 0 chr6 100626653 100626948 -88652606 + AluSg SINE Alu 1 298 -12 1881 141 20 7 chr6 100629102 100629400 -88650154 + AluJb SINE Alu 2 303 -9 2413 81 3 0 chr6 100629625 100629923 -88649631 + AluY SINE Alu 1 299 -12 2372 96 0 0 chr6 100629931 100630233 -88649321 + AluSg SINE Alu 1 302 -8 1924 134 27 13 chr6 100630233 100630531 -88649023 + AluSx SINE Alu 1 303 -9 1244 174 56 45 chr6 100631465 100631753 -88647801 - MER58B DNA MER1_type -3 338 48 307 225 38 12 chr6 100631866 100631946 -88647608 - MER103 DNA DNA -55 111 30 22 0 0 0 chr6 100634627 100634649 -88644905 + GC_rich Low_complexity Low_complexity 1 22 0 247 247 21 21 chr6 100634715 100634808 -88644746 + (CGG)n Simple_repeat Simple_repeat 3 95 0 2307 92 3 3 chr6 100636365 100636670 -88642884 + AluSx SINE Alu 1 305 -7 2426 70 7 3 chr6 100636674 100636975 -88642579 + AluSg SINE Alu 2 303 -7 2061 136 62 117 chr6 100637479 100637629 -88641925 + MLT1C LTR MaLR 23 180 -287 1912 156 6 16 chr6 100637629 100637944 -88641610 + AluJb SINE Alu 1 312 0 2061 136 62 117 chr6 100637944 100638264 -88641290 + MLT1C LTR MaLR 180 467 0 417 204 29 66 chr6 100638329 100638466 -88641088 - AluJb SINE Alu -178 134 3 247 342 70 9 chr6 100638688 100638802 -88640752 + L2 LINE L2 2951 3071 -201 1845 168 0 0 chr6 100639163 100639455 -88640099 - AluJo SINE Alu -12 300 9 744 112 64 16 chr6 100639555 100639680 -88639874 + FLAM_C SINE Alu 1 131 -12 234 174 0 0 chr6 100639685 100639731 -88639823 + A-rich Low_complexity Low_complexity 1 46 0 192 309 103 0 chr6 100640560 100640628 -88638926 - L3b LINE CR1 -37 1546 1472 400 49 246 0 chr6 100640712 100640773 -88638781 + MADE1 DNA Mariner 5 80 0 180 0 0 0 chr6 100640925 100640945 -88638609 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 2865 13 0 3 chr6 100640949 100641261 -88638293 - AluYa5 SINE Alu 0 311 1 459 117 43 75 chr6 100641631 100641725 -88637829 + MER53 DNA DNA 1 91 -98 676 174 9 0 chr6 100641738 100641847 -88637707 + FLAM_C SINE Alu 9 118 -25 367 130 0 0 chr6 100641876 100641930 -88637624 + MER53 DNA DNA 136 189 0 4573 43 7 5 chr6 100642011 100642564 -88636990 + L1PA5 LINE L1 5374 5927 -227 379 245 56 71 chr6 100692565 100692833 -88586721 + L1ME1 LINE L1 5901 6332 -2 1085 215 44 4 chr6 100693389 100693617 -88585937 + MIR SINE MIR 4 240 -22 1920 103 0 0 chr6 100694110 100694363 -88585191 + AluSc SINE Alu 1 253 -56 1882 101 0 0 chr6 100694463 100694700 -88584854 - AluSq SINE Alu -76 237 1 266 177 16 0 chr6 100694701 100694763 -88584791 - L1MEc LINE L1 -4005 2391 2329 3798 176 55 4 chr6 100694774 100695533 -88584021 - L1MD1 LINE L1 -3 6308 5511 531 195 6 38 chr6 100695548 100695707 -88583847 - L1MD1 LINE L1 -887 5328 5175 * 5454 213 53 61 chr6 100695704 100696304 -88583250 - L1MD1 LINE L1 -1822 4393 3790 185 83 28 0 chr6 100696304 100696340 -88583214 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 5454 213 53 61 chr6 100696340 100696441 -88583113 - L1MD1 LINE L1 -2425 3790 3690 372 22 0 0 chr6 100696441 100696486 -88583068 + (TC)n Simple_repeat Simple_repeat 2 46 0 5454 213 53 61 chr6 100696486 100697731 -88581823 - L1MD1 LINE L1 -2525 3690 2462 794 241 15 0 chr6 100697729 100697932 -88581622 - L1MD1 LINE L1 -6086 310 105 * 6292 232 54 19 chr6 100698921 100699592 -88579962 + L1MC2 LINE L1 2425 3071 -3075 2191 74 84 0 chr6 100699592 100699876 -88579678 + AluY SINE Alu 1 308 -3 6292 232 54 19 chr6 100699876 100701257 -88578297 + L1MC2 LINE L1 3071 4549 -1597 216 0 0 0 chr6 100701257 100701281 -88578273 + (TTTTTA)n Simple_repeat Simple_repeat 1 24 0 334 313 96 6 chr6 100701321 100701487 -88578067 + L2 LINE L2 2880 3060 -253 566 303 152 30 chr6 100701597 100702026 -88577528 + L2 LINE L2 2819 3299 -14 1325 221 17 14 chr6 100702271 100702633 -88576921 + L1MC2 LINE L1 4537 4899 -1247 1745 118 6 78 chr6 100702848 100703180 -88576374 + MER4E LTR ERV1 472 779 0 2201 164 37 11 chr6 100703180 100703731 -88575823 + L1MC2 LINE L1 5143 5714 -630 839 204 24 63 chr6 100703742 100703997 -88575557 - LTR4 LTR ERV1 0 596 352 549 255 155 47 chr6 100704117 100704439 -88575115 - LTR4 LTR ERV1 -239 357 1 2697 138 7 7 chr6 100704481 100704923 -88574631 - L1PA15 LINE L1 0 6165 5724 3315 143 53 13 chr6 100704923 100705545 -88574009 + L1MC2 LINE L1 5696 6342 -2 1678 140 9 44 chr6 100705545 100705820 -88573734 - L1MC1 LINE L1 0 6333 6050 1731 183 84 55 chr6 100705820 100706236 -88573318 + MSTA LTR MaLR 1 428 0 9452 162 15 10 chr6 100706236 100707880 -88571674 + MSTA-int LTR MaLR 1 1651 0 2021 178 72 2 chr6 100707880 100708280 -88571274 + MSTA LTR MaLR 1 428 0 1678 140 9 44 chr6 100708280 100708315 -88571239 - L1MC1 LINE L1 -280 6053 6024 26 30 0 0 chr6 100708781 100708814 -88570740 + AT_rich Low_complexity Low_complexity 1 33 0 294 289 46 13 chr6 100708869 100709021 -88570533 + L1ME LINE L1 5687 5843 -278 21 89 0 0 chr6 100709274 100709330 -88570224 + AT_rich Low_complexity Low_complexity 1 56 0 667 192 172 7 chr6 100709594 100709745 -88569809 - MER5A DNA MER1_type -1 188 13 406 196 0 33 chr6 100709859 100710012 -88569542 + (TA)n Simple_repeat Simple_repeat 1 148 0 182 324 68 0 chr6 100710115 100710189 -88569365 + MIR3 SINE MIR 119 197 -11 321 243 75 28 chr6 100711544 100711651 -88567903 + MIR SINE MIR 30 141 -67 740 103 0 10 chr6 100711854 100712098 -88567456 + AluSx SINE Alu 9 299 -11 21 26 0 26 chr6 100712182 100712203 -88567351 + AT_rich Low_complexity Low_complexity 1 22 -16 2206 54 0 4 chr6 100712203 100712464 -88567090 + AluY SINE Alu 40 299 -12 21 26 0 26 chr6 100712464 100712481 -88567073 + AT_rich Low_complexity Low_complexity 22 38 0 22 35 0 0 chr6 100712809 100712838 -88566716 + AT_rich Low_complexity Low_complexity 1 29 0 409 300 96 48 chr6 100713266 100713579 -88565975 + L1MEd LINE L1 57 384 -5735 1012 195 29 5 chr6 100714576 100714786 -88564768 - MER58C DNA MER1_type 0 215 1 271 285 24 24 chr6 100715267 100715336 -88564218 + GA-rich Low_complexity Low_complexity 1 72 -51 2459 192 65 4 chr6 100715336 100715826 -88563728 + MLT2B1 LTR ERVL 1 520 0 271 285 24 24 chr6 100715826 100715879 -88563675 + GA-rich Low_complexity Low_complexity 71 123 0 2344 82 0 0 chr6 100715904 100716196 -88563358 - AluSg1 SINE Alu -17 292 1 251 224 32 0 chr6 100716322 100716393 -88563161 - MLT1J LTR MaLR -322 124 59 2873 183 47 74 chr6 100716799 100717715 -88561839 + L1ME2 LINE L1 5211 6101 -63 197 32 0 32 chr6 100717729 100717760 -88561794 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 609 126 0 72 chr6 100717763 100717874 -88561680 - AluSg/x SINE Alu -28 284 182 3380 246 56 16 chr6 100717878 100718778 -88560776 - HERVL40 LTR ERVL -1571 3959 3024 537 208 67 0 chr6 100718788 100718908 -88560646 - MER58B DNA MER1_type 0 341 214 263 208 0 0 chr6 100718940 100718993 -88560561 - MER58B DNA MER1_type -115 226 174 5592 169 16 19 chr6 100718995 100720867 -88558687 + L1PA13 LINE L1 4297 6156 -7 22 0 0 0 chr6 100720953 100720975 -88558579 + AT_rich Low_complexity Low_complexity 1 22 0 3190 272 38 15 chr6 100721017 100721956 -88557598 - HERVL40 LTR ERVL -2521 3009 2049 1195 259 194 25 chr6 100721954 100722548 -88557006 - HERVL40 LTR ERVL -3913 1617 924 * 316 286 29 9 chr6 100722744 100722849 -88556705 - HERVL40 LTR ERVL -5416 114 8 1794 217 46 16 chr6 100722860 100723297 -88556257 - LTR40b LTR ERVL -5 457 8 552 302 22 11 chr6 100723306 100723488 -88556066 + L2 LINE L2 3130 3313 0 2254 87 0 7 chr6 100723650 100723938 -88555616 - AluSc SINE Alu -23 286 1 315 217 66 66 chr6 100724009 100724115 -88555439 - MER96 DNA MER1_type? -1 174 69 1246 261 50 40 chr6 100724259 100724699 -88554855 + LTR33 LTR ERVL 9 456 -65 1731 144 0 77 chr6 100724699 100725012 -88554542 + AluJb SINE Alu 1 289 -23 1246 261 50 40 chr6 100725012 100725069 -88554485 + LTR33 LTR ERVL 456 511 -10 21 57 0 0 chr6 100725143 100725178 -88554376 + AT_rich Low_complexity Low_complexity 1 35 0 430 250 139 14 chr6 100726140 100726284 -88553270 - MIR SINE MIR -6 256 95 224 200 62 25 chr6 100727477 100727557 -88551997 - L2 LINE L2 0 3313 3231 2388 61 10 3 chr6 100727971 100728266 -88551288 - AluY SINE Alu -14 297 1 225 0 0 0 chr6 100728273 100728298 -88551256 + (T)n Simple_repeat Simple_repeat 1 25 0 236 325 31 63 chr6 100728840 100729031 -88550523 + L3b LINE CR1 1301 1485 -98 200 180 0 40 chr6 100729636 100729686 -88549868 + (TTA)n Simple_repeat Simple_repeat 1 48 0 233 376 16 32 chr6 100731066 100731191 -88548363 + L2 LINE L2 3139 3261 -11 2311 105 0 3 chr6 100733182 100733488 -88546066 - AluSc SINE Alu -4 305 1 239 136 0 136 chr6 100733493 100733559 -88545995 - Alu SINE Alu -190 112 78 2320 88 3 10 chr6 100733726 100734032 -88545522 - AluSq SINE Alu -9 304 1 508 296 82 20 chr6 100734035 100734231 -88545323 - L2 LINE L2 -2 3311 3104 306 0 0 0 chr6 100734398 100734432 -88545122 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr6 100735075 100735096 -88544458 + AT_rich Low_complexity Low_complexity 1 21 0 1877 164 64 19 chr6 100735523 100735896 -88543658 - MLT1B LTR MaLR 0 390 1 4033 185 81 63 chr6 100735966 100737022 -88542532 + Charlie1a DNA MER1_type 1 1075 -380 448 191 223 6 chr6 100737194 100737351 -88542203 - MER113 DNA MER1_type? -330 191 1 427 305 36 24 chr6 100738279 100738446 -88541108 + MIR3 SINE MIR 5 173 -35 258 105 0 0 chr6 100739517 100739555 -88539999 + (TG)n Simple_repeat Simple_repeat 2 39 0 2060 103 0 61 chr6 100742819 100743131 -88536423 - AluSx SINE Alu -19 293 1 2083 139 0 0 chr6 100743367 100743670 -88535884 - AluSg SINE Alu -7 303 1 539 164 19 39 chr6 100744914 100745050 -88534504 - L1MD3 LINE L1 -5 7803 7692 14898 191 38 34 chr6 100745070 100746031 -88533523 - L1MA7 LINE L1 -3 6492 5536 6477 78 7 3 chr6 100746031 100747844 -88531710 - L1PA13 LINE L1 -19 6144 4324 14898 191 38 34 chr6 100747844 100748717 -88530837 - L1MA7 LINE L1 -959 5536 4668 2337 76 14 0 chr6 100748717 100749007 -88530547 - AluY SINE Alu -17 294 1 14898 191 38 34 chr6 100749007 100750266 -88529288 - L1MA7 LINE L1 -1827 4668 3415 2084 123 23 0 chr6 100750266 100750567 -88528987 + AluSp SINE Alu 1 308 -5 14898 191 38 34 chr6 100750567 100753418 -88526136 - L1MA7 LINE L1 -3080 3415 678 2159 180 84 68 chr6 100753623 100754088 -88525466 + MLT2B1 LTR ERVL 1 476 -44 244 70 47 0 chr6 100754088 100754131 -88525423 + (TA)n Simple_repeat Simple_repeat 2 46 0 2159 180 84 68 chr6 100754131 100754176 -88525378 + MLT2B1 LTR ERVL 476 519 -1 1184 215 5 0 chr6 100754528 100754751 -88524803 + MER58A DNA MER1_type 1 224 0 22 0 0 0 chr6 100754776 100754798 -88524756 + AT_rich Low_complexity Low_complexity 1 22 0 1431 249 66 42 chr6 100754894 100755488 -88524066 + L1ME4a LINE L1 5461 6068 -53 345 24 0 0 chr6 100756011 100756053 -88523501 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr6 100756100 100756122 -88523432 + AT_rich Low_complexity Low_complexity 1 22 0 1487 151 88 14 chr6 100756397 100756681 -88522873 + L1MC1 LINE L1 6017 6321 -12 318 328 8 8 chr6 100756699 100756827 -88522727 + MER5A DNA MER1_type 61 188 -1 309 89 0 0 chr6 100758085 100758130 -88521424 + (TG)n Simple_repeat Simple_repeat 2 46 0 408 20 0 0 chr6 100758261 100758310 -88521244 + (TG)n Simple_repeat Simple_repeat 1 49 0 681 292 76 23 chr6 100758673 100758937 -88520617 + L3 LINE CR1 709 986 -591 198 356 22 22 chr6 100758956 100759091 -88520463 - MIR SINE MIR -50 212 78 378 289 157 12 chr6 100759120 100759286 -88520268 - MIR SINE MIR -7 255 66 1196 193 113 69 chr6 100759290 100759384 -88520170 + MLT1D LTR MaLR 8 96 -409 2147 125 10 0 chr6 100759384 100759687 -88519867 + AluSx SINE Alu 1 306 -6 1196 193 113 69 chr6 100759687 100760069 -88519485 + MLT1D LTR MaLR 96 505 0 758 310 88 0 chr6 100760754 100761015 -88518539 + L3 LINE CR1 1286 1569 -8 204 211 0 0 chr6 100760985 100761023 -88518531 + L3b LINE CR1 1546 1583 0 * 21 36 0 0 chr6 100761031 100761059 -88518495 + AT_rich Low_complexity Low_complexity 1 28 0 245 351 32 32 chr6 100761350 100761535 -88518019 + MIR SINE MIR 28 212 -50 6216 73 1 7 chr6 100761538 100762376 -88517178 + L1PA13 LINE L1 5330 6162 -1 928 299 68 28 chr6 100762469 100762940 -88516614 - LTR16C LTR ERVL -1 490 1 402 246 119 8 chr6 100763643 100763777 -88515777 + MIR SINE MIR 68 216 -46 431 351 54 0 chr6 100764126 100764274 -88515280 - L2 LINE L2 -1 3271 3116 244 379 50 63 chr6 100765191 100765510 -88514044 + L2 LINE L2 2915 3229 -43 238 349 118 59 chr6 100765718 100766039 -88513515 - L2 LINE L2 -15 3257 2918 333 309 97 37 chr6 100766443 100766660 -88512894 - MIR SINE MIR -9 253 24 180 77 0 0 chr6 100767384 100767410 -88512144 + (CA)n Simple_repeat Simple_repeat 1 26 0 183 176 176 0 chr6 100767738 100767789 -88511765 - L3b LINE CR1 -253 1330 1271 1680 129 71 82 chr6 100769311 100769503 -88510051 - THE1C LTR MaLR 0 375 187 234 0 0 0 chr6 100769503 100769529 -88510025 + (GA)n Simple_repeat Simple_repeat 2 27 0 1680 129 71 82 chr6 100769529 100769715 -88509839 - THE1C LTR MaLR -188 187 1 2152 117 3 13 chr6 100769758 100770067 -88509487 + AluSq SINE Alu 1 306 -7 184 286 104 0 chr6 100770221 100770298 -88509256 + L2 LINE L2 2350 2434 -880 24 0 0 0 chr6 100771200 100771224 -88508330 + AT_rich Low_complexity Low_complexity 1 24 0 834 252 98 34 chr6 100771297 100771478 -88508076 - L1ME4a LINE L1 -12 6109 5941 2544 41 7 0 chr6 100771478 100771773 -88507781 - AluY SINE Alu -14 297 1 834 252 98 34 chr6 100771773 100772468 -88507086 - L1ME4a LINE L1 -180 5941 5192 1157 224 30 18 chr6 100772637 100773133 -88506421 - MLT1E LTR MaLR 0 593 1 21 0 0 0 chr6 100773219 100773240 -88506314 + AT_rich Low_complexity Low_complexity 1 21 0 842 138 7 22 chr6 100773385 100773523 -88506031 - AluJo SINE Alu -176 136 1 21 36 0 0 chr6 100774339 100774367 -88505187 + AT_rich Low_complexity Low_complexity 1 28 0 36 23 0 0 chr6 100774564 100774607 -88504947 + AT_rich Low_complexity Low_complexity 1 43 0 452 241 9 0 chr6 100774624 100774732 -88504822 + MARNA DNA Mariner 210 318 -268 180 135 0 0 chr6 100774747 100774784 -88504770 + (A)n Simple_repeat Simple_repeat 1 37 0 558 277 30 6 chr6 100774784 100774950 -88504604 + MARNA DNA Mariner 327 496 -90 1496 159 0 9 chr6 100775016 100775248 -88504306 - AluSq SINE Alu -20 293 64 5449 241 51 21 chr6 100775248 100778168 -88501386 + L1MEc LINE L1 466 3429 -2786 413 228 61 0 chr6 100778205 100778319 -88501235 + L1MEc LINE L1 4173 4293 -1922 228 272 38 57 chr6 100779083 100779145 -88500409 - L1MA10 LINE L1 0 6334 6272 4193 133 32 22 chr6 100779145 100779873 -88499681 + L1PB3 LINE L1 5416 6150 -4 228 272 38 57 chr6 100779873 100779968 -88499586 - L1MA10 LINE L1 -62 6272 6180 * 355 218 82 36 chr6 100779914 100780024 -88499530 - L1ME1 LINE L1 -92 6074 5960 944 188 24 14 chr6 100780130 100780343 -88499211 - L1ME1 LINE L1 -234 5932 5718 4695 245 37 9 chr6 100780402 100781791 -88497763 - L1M4 LINE L1 -2436 3710 2282 827 109 0 0 chr6 100781794 100781904 -88497650 - AluSg/x SINE Alu -15 295 186 260 319 202 0 chr6 100781904 100782023 -88497531 - L2 LINE L2 -25 3247 3105 356 278 212 20 chr6 100783115 100783313 -88496241 + MIR SINE MIR 17 252 -10 2085 135 0 3 chr6 100783765 100784068 -88495486 + AluSx SINE Alu 4 305 -7 1195 8 0 0 chr6 100786401 100786535 -88493019 - AluYa5/8 SINE Alu -4 306 173 548 252 72 12 chr6 100786628 100786835 -88492719 + MIR SINE MIR 28 252 -10 23 54 0 0 chr6 100786952 100786989 -88492565 + AT_rich Low_complexity Low_complexity 1 37 0 471 219 89 71 chr6 100787029 100787198 -88492356 - MIR SINE MIR -1 261 90 407 176 0 0 chr6 100787351 100787419 -88492135 + MER3 DNA MER1_type 42 109 -100 565 216 130 22 chr6 100787424 100787609 -88491945 + MIR SINE MIR 48 252 -10 359 287 174 14 chr6 100787990 100788405 -88491149 + L1MC4a LINE L1 5695 6175 -1633 352 276 143 112 chr6 100790167 100790613 -88488941 - L2 LINE L2 -4 3268 2809 241 353 47 26 chr6 100790840 100791030 -88488524 - L2 LINE L2 -571 2743 2550 325 305 43 124 chr6 100791155 100791326 -88488228 + L2 LINE L2 3014 3155 -117 1946 98 16 75 chr6 100791326 100791631 -88487923 - AluSc SINE Alu -22 287 1 325 305 43 124 chr6 100791631 100791741 -88487813 + L2 LINE L2 3155 3272 0 2335 109 3 0 chr6 100792236 100792547 -88487007 + AluSx SINE Alu 1 312 0 2839 16 0 0 chr6 100799497 100799815 -88479739 - AluYb8 SINE Alu 0 318 1 237 237 105 92 chr6 100800797 100800949 -88478605 + MIR SINE MIR 68 221 -41 413 243 76 49 chr6 100801054 100801198 -88478356 - MIR SINE MIR -14 248 101 357 328 8 16 chr6 100801414 100801536 -88478018 - MIR3 SINE MIR -87 121 1 189 296 0 0 chr6 100801949 100801993 -88477561 - L2 LINE L2 -8 3305 3262 346 239 292 0 chr6 100802053 100802166 -88477388 - MIR SINE MIR -61 201 56 2297 91 3 0 chr6 100806570 100806857 -88472697 - AluSg SINE Alu -22 288 1 198 241 0 69 chr6 100808019 100808077 -88471477 - MIR SINE MIR -23 239 186 2152 145 7 0 chr6 100808797 100809107 -88470447 - AluSx SINE Alu 0 312 1 1878 168 7 3 chr6 100809107 100809403 -88470151 - AluJb SINE Alu -3 309 12 541 227 190 6 chr6 100810209 100810372 -88469182 + MIR SINE MIR 14 206 -56 2420 86 0 0 chr6 100810408 100810711 -88468843 + AluSc SINE Alu 1 303 -6 414 0 0 0 chr6 100811453 100811499 -88468055 + (TTA)n Simple_repeat Simple_repeat 3 48 0 668 26 0 0 chr6 100811499 100811577 -88467977 - L1PA4 LINE L1 -18 6137 6060 603 14 0 0 chr6 100811577 100811649 -88467905 + L1PA4 LINE L1 5912 5983 -172 2081 109 61 0 chr6 100811657 100811950 -88467604 - AluSx SINE Alu -1 311 1 2959 155 27 18 chr6 100812486 100813046 -88466508 + MER41B LTR ERV1 1 565 -70 3174 134 13 9 chr6 100813046 100813591 -88465963 + LTR10A LTR ERV1 1 547 -62 420 176 0 0 chr6 100813604 100813678 -88465876 + MER41A LTR ERV1 481 554 0 2125 122 3 0 chr6 100813739 100814033 -88465521 - AluSc SINE Alu -14 295 1 694 266 0 7 chr6 100814483 100814637 -88464917 - MER5A DNA MER1_type 0 189 37 393 248 124 31 chr6 100814709 100814838 -88464716 + L2 LINE L2 3173 3313 0 681 314 53 8 chr6 100814918 100815163 -88464391 - MIR SINE MIR 0 262 7 326 309 67 101 chr6 100815287 100815368 -88464186 + L2 LINE L2 2941 3023 -249 3798 136 9 71 chr6 100815368 100816104 -88463450 - LTR8 LTR ERV1 0 691 1 326 309 67 101 chr6 100816104 100816349 -88463205 + L2 LINE L2 3023 3256 -16 25 31 0 0 chr6 100816370 100816402 -88463152 + AT_rich Low_complexity Low_complexity 1 32 0 255 219 32 65 chr6 100816557 100816680 -88462874 - L1MEd LINE L1 -5347 772 654 23 0 0 0 chr6 100817193 100817216 -88462338 + AT_rich Low_complexity Low_complexity 1 23 0 749 227 179 10 chr6 100819395 100819602 -88459952 - MIR SINE MIR -1 261 20 1635 196 3 23 chr6 100820042 100820343 -88459211 - AluJb SINE Alu -17 295 1 959 197 6 6 chr6 100820925 100821103 -88458451 - MER45A DNA AcHobo 0 178 1 261 135 0 0 chr6 100822591 100822643 -88456911 + (TC)n Simple_repeat Simple_repeat 2 53 0 182 242 32 48 chr6 100823370 100823432 -88456122 + MIR3 SINE MIR 147 207 -1 1634 182 35 35 chr6 100823914 100824283 -88455271 + MLT1A2 LTR MaLR 6 374 0 212 180 20 20 chr6 100824412 100824462 -88455092 + (CA)n Simple_repeat Simple_repeat 1 50 0 2269 83 0 0 chr6 100824485 100824816 -88454738 - AluY SINE Alu 0 311 1 1820 145 47 10 chr6 100824849 100825146 -88454408 + AluSc SINE Alu 1 308 -1 388 263 191 24 chr6 100825653 100825873 -88453681 + MIR SINE MIR 2 253 -9 619 203 34 34 chr6 100827142 100827290 -88452264 + L2 LINE L2 3165 3312 -1 743 264 85 3 chr6 100827290 100827502 -88452052 - MIR SINE MIR -21 241 19 861 218 17 81 chr6 100828306 100828654 -88450900 - L1ME3A LINE L1 -265 5974 5649 525 282 52 33 chr6 100828656 100829007 -88450547 - LTR16C LTR ERVL -17 474 87 399 342 105 21 chr6 100829077 100829495 -88450059 + L1MEd LINE L1 109 561 -5558 997 303 26 20 chr6 100829552 100829899 -88449655 - LTR16C LTR ERVL -142 349 1 1932 111 11 18 chr6 100830004 100830284 -88449270 + AluSg1 SINE Alu 1 278 -31 261 108 31 15 chr6 100830284 100830349 -88449205 + (TA)n Simple_repeat Simple_repeat 2 67 0 665 272 123 14 chr6 100830492 100830841 -88448713 - L1ME3A LINE L1 -853 5362 4976 442 269 27 22 chr6 100830881 100831104 -88448450 - L1ME3A LINE L1 -4793 1603 1380 1958 142 3 13 chr6 100831403 100831705 -88447849 - AluSx SINE Alu -13 299 1 270 0 0 0 chr6 100831879 100831909 -88447645 + (TG)n Simple_repeat Simple_repeat 2 31 0 225 258 0 48 chr6 100832626 100832750 -88446804 + (CATA)n Simple_repeat Simple_repeat 4 121 0 184 264 218 11 chr6 100832750 100832837 -88446717 - MER5B DNA MER1_type -59 119 15 606 314 158 50 chr6 100833083 100834054 -88445500 + L2 LINE L2 2193 3271 -1 2348 98 0 3 chr6 100834112 100834418 -88445136 - AluSq SINE Alu -8 305 1 1884 151 50 7 chr6 100834507 100834806 -88444748 - AluSx SINE Alu 0 312 1 669 305 68 14 chr6 100834922 100835168 -88444386 + MIR SINE MIR 2 262 0 198 0 0 0 chr6 100835937 100835959 -88443595 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2049 121 0 0 chr6 100835961 100836242 -88443312 - AluSx SINE Alu -31 281 1 697 108 0 0 chr6 100836746 100836839 -88442715 + AluY SINE Alu 194 286 -25 348 268 110 77 chr6 100837098 100837307 -88442247 - MLT1J LTR MaLR 0 511 296 * 409 226 28 19 chr6 100837298 100837404 -88442150 - MLT1H1 LTR MaLR -445 110 4 2033 159 27 37 chr6 100837651 100838092 -88441462 + MER51B LTR ERV1 1 377 0 206 284 15 15 chr6 100838207 100838274 -88441280 - MIR SINE MIR -3 259 193 593 360 81 34 chr6 100838433 100838840 -88440714 + L3 LINE CR1 758 1194 -383 2319 88 0 3 chr6 100838840 100839145 -88440409 - AluY SINE Alu -7 304 1 593 360 81 34 chr6 100839145 100839234 -88440320 + L3 LINE CR1 1194 1277 -300 2739 141 29 16 chr6 100839348 100839944 -88439610 - MER4E LTR ERV1 0 779 1 2235 261 80 41 chr6 100839980 100840816 -88438738 + L1MEc LINE L1 996 1798 -4417 2315 97 0 0 chr6 100840816 100841114 -88438440 + AluSq SINE Alu 1 298 -15 2235 261 80 41 chr6 100841114 100841250 -88438304 + L1MEc LINE L1 1798 1927 -4288 2244 120 0 0 chr6 100841250 100841550 -88438004 - AluSg SINE Alu -10 300 1 2235 261 80 41 chr6 100841550 100842280 -88437274 + L1MEc LINE L1 1927 2709 -3506 564 242 0 0 chr6 100842281 100842405 -88437149 - L1M4 LINE L1 -2296 3850 3727 253 175 35 0 chr6 100842403 100842460 -88437094 + L1MEc LINE L1 2727 2785 -3430 * 1312 202 23 35 chr6 100842594 100842930 -88436624 - L1M4 LINE L1 -3027 3119 2787 3604 80 43 129 chr6 100842930 100843597 -88435957 + LTR66 LTR ERVL 1 610 0 1312 202 23 35 chr6 100843597 100843656 -88435898 - L1M4 LINE L1 -3359 2787 2729 725 272 13 42 chr6 100843702 100844014 -88435540 + L1MEc LINE L1 3261 3563 -2652 1969 175 5 62 chr6 100844016 100844314 -88435240 - MER57A LTR ERV1 -9 394 125 2339 97 0 3 chr6 100844314 100844613 -88434941 + AluSq SINE Alu 1 298 -15 1969 175 5 62 chr6 100844613 100844731 -88434823 - MER57A LTR ERV1 -278 125 2 426 278 23 107 chr6 100844793 100844848 -88434706 + L1ME1 LINE L1 5964 6022 -144 3746 152 107 33 chr6 100844848 100845616 -88433938 - LTR1B LTR ERV1 0 826 2 426 278 23 107 chr6 100845616 100845776 -88433778 + L1ME1 LINE L1 6022 6161 -5 281 342 0 0 chr6 100846021 100846100 -88433454 + L3 LINE CR1 1462 1540 -37 233 341 0 12 chr6 100846099 100846184 -88433370 - MER5B DNA MER1_type -6 172 89 * 252 77 0 0 chr6 100846556 100846595 -88432959 + (GA)n Simple_repeat Simple_repeat 2 40 0 241 203 0 17 chr6 100847189 100847248 -88432306 + HsTC2 DNA Tc2 13 70 -1828 4181 149 52 0 chr6 100848237 100848923 -88430631 - MER72 LTR ERV1 0 722 1 233 270 63 0 chr6 100853585 100853648 -88425906 + L2 LINE L2 3247 3313 0 32 26 0 0 chr6 100853732 100853771 -88425783 + AT_rich Low_complexity Low_complexity 1 39 0 737 247 55 62 chr6 100855157 100855558 -88423996 + HAL1b LINE L1 95 492 -856 904 244 14 12 chr6 100855564 100855900 -88423654 - MER90 LTR ERV1 -167 447 1 2262 117 36 28 chr6 100855922 100856281 -88423273 - THE1B LTR MaLR 0 364 3 340 317 111 11 chr6 100856472 100856652 -88422902 - MIR SINE MIR 0 262 65 23 0 0 0 chr6 100857715 100857738 -88421816 + AT_rich Low_complexity Low_complexity 1 23 0 304 308 99 17 chr6 100859713 100859885 -88419669 + MIR SINE MIR 7 192 -70 1879 117 73 0 chr6 100860033 100860306 -88419248 - AluSx SINE Alu -19 293 1 2105 71 0 15 chr6 100860461 100860728 -88418826 - AluY SINE Alu -17 294 32 324 286 111 16 chr6 100860733 100860859 -88418695 - L2 LINE L2 -17 3296 3159 957 218 26 17 chr6 100861008 100861242 -88418312 + MLT1J LTR MaLR 37 272 -239 306 164 0 0 chr6 100861547 100861602 -88417952 + (TATG)n Simple_repeat Simple_repeat 1 55 0 31 58 0 0 chr6 100863978 100864030 -88415524 + AT_rich Low_complexity Low_complexity 1 52 0 292 346 161 36 chr6 100864110 100864135 -88415419 + L2 LINE L2 2829 2849 -423 2855 13 0 0 chr6 100864135 100864446 -88415108 - AluYb8 SINE Alu -7 311 1 292 346 161 36 chr6 100864446 100864810 -88414744 + L2 LINE L2 2849 3267 -5 491 174 18 28 chr6 100865579 100865688 -88413866 - MER103 DNA DNA -1 165 58 1070 294 27 22 chr6 100865742 100866143 -88413411 - MLT1I LTR MaLR -4 405 3 6667 194 28 12 chr6 100866227 100869869 -88409685 + L1M3f LINE L1 1 3706 -2622 6791 153 12 60 chr6 100869881 100871106 -88408448 + L1PA12 LINE L1 554 1719 -5862 254 333 0 0 chr6 100871757 100871835 -88407719 + MIR SINE MIR 184 261 -1 217 239 30 8 chr6 100872533 100872667 -88406887 + (TA)n Simple_repeat Simple_repeat 2 138 0 255 242 9 0 chr6 100872719 100872810 -88406744 + L1MB2 LINE L1 6078 6183 0 21 36 0 0 chr6 100872810 100872838 -88406716 + AT_rich Low_complexity Low_complexity 1 28 0 432 111 41 47 chr6 100873142 100873313 -88406241 + (TA)n Simple_repeat Simple_repeat 2 171 0 334 232 20 13 chr6 100873381 100873532 -88406022 + (TA)n Simple_repeat Simple_repeat 2 153 0 212 226 32 16 chr6 100873585 100873647 -88405907 + (CATATA)n Simple_repeat Simple_repeat 1 63 0 190 116 47 0 chr6 100873689 100873732 -88405822 + (TA)n Simple_repeat Simple_repeat 1 45 0 392 149 52 23 chr6 100873754 100873928 -88405626 + (TA)n Simple_repeat Simple_repeat 2 180 0 2020 228 53 34 chr6 100874930 100875517 -88404037 - L1ME2 LINE L1 -10 6154 5557 973 266 19 10 chr6 100875523 100875835 -88403719 - L1ME2 LINE L1 -905 5241 4927 742 171 0 8 chr6 100875855 100875972 -88403582 - FLAM_A SINE Alu -14 119 4 408 310 26 0 chr6 100876174 100876290 -88403264 - MIR3 SINE MIR -1 207 89 1151 226 21 21 chr6 100876865 100877144 -88402410 - MLT1C LTR MaLR -2 465 187 828 147 8 47 chr6 100877127 100877176 -88402378 - MLT1C LTR MaLR -161 229 180 * 273 29 0 0 chr6 100877176 100877210 -88402344 + (TG)n Simple_repeat Simple_repeat 1 34 0 828 147 8 47 chr6 100877210 100877356 -88402198 - MLT1C LTR MaLR -210 180 56 911 168 58 23 chr6 100878845 100879018 -88400536 + MER5A DNA MER1_type 1 179 -10 550 284 138 28 chr6 100879302 100879520 -88400034 + MIR SINE MIR 13 254 -8 1709 165 0 7 chr6 100879991 100880270 -88399284 - AluJb SINE Alu -17 295 19 225 304 22 22 chr6 100881273 100881365 -88398189 + MER103 DNA DNA 3 94 -72 642 190 89 0 chr6 100881394 100881552 -88398002 + MER104 DNA Tc2 9 180 0 296 82 0 61 chr6 100881552 100881592 -88397962 + MER103 DNA DNA 130 166 0 546 230 196 0 chr6 100882009 100882157 -88397397 - MER5A DNA MER1_type -3 186 10 2333 83 0 0 chr6 100882280 100882569 -88396985 - AluSg SINE Alu -21 289 1 2270 93 3 7 chr6 100882644 100882954 -88396600 - AluSc SINE Alu 0 309 1 605 243 81 22 chr6 100883182 100883367 -88396187 + L2 LINE L2 3097 3292 -21 1080 170 36 9 chr6 100883619 100883842 -88395712 + L1MB3 LINE L1 5953 6181 -2 308 234 16 0 chr6 100884060 100884124 -88395430 + MER5A DNA MER1_type 1 65 -124 325 314 88 30 chr6 100885441 100885641 -88393913 + MIR SINE MIR 17 229 -33 2170 120 7 0 chr6 100885788 100886088 -88393466 - AluSx SINE Alu -10 302 1 291 359 47 39 chr6 100886345 100886473 -88393081 + MIR3 SINE MIR 70 198 -10 1317 329 103 15 chr6 100886500 100887172 -88392382 + L3 LINE CR1 367 1097 -480 631 157 109 91 chr6 100887186 100887396 -88392158 + Looper DNA T2_type 8 221 -1337 2355 79 7 0 chr6 100887483 100887775 -88391779 - AluY SINE Alu -17 294 1 6379 162 46 21 chr6 100887786 100889079 -88390475 + Looper DNA T2_type 234 1558 0 198 171 49 0 chr6 100889245 100889286 -88390268 - MIR SINE MIR -128 134 92 446 277 50 31 chr6 100891290 100891449 -88388105 - MIR3 SINE MIR -7 201 40 244 272 38 57 chr6 100894777 100894839 -88384715 - L1MA10 LINE L1 0 6334 6272 4524 133 32 22 chr6 100894839 100895567 -88383987 + L1PB3 LINE L1 5416 6150 -4 244 272 38 57 chr6 100895567 100895662 -88383892 - L1MA10 LINE L1 -62 6272 6180 * 354 218 82 36 chr6 100895608 100895718 -88383836 - L1ME1 LINE L1 -92 6074 5960 979 188 24 14 chr6 100895824 100896037 -88383517 - L1ME1 LINE L1 -234 5932 5718 4789 244 42 3 chr6 100896096 100897419 -88382135 - L1M4 LINE L1 -2436 3710 2336 189 250 36 36 chr6 100900283 100900339 -88379215 - L2 LINE L2 -9 3263 3208 850 191 12 12 chr6 100900521 100900683 -88378871 - MER20 DNA MER1_type -55 164 3 2438 64 3 0 chr6 100901544 100901842 -88377712 - AluY SINE Alu -12 299 1 327 167 0 0 chr6 100901885 100901939 -88377615 - L2 LINE L2 -4 3268 3215 184 284 61 122 chr6 100902140 100902288 -88377266 + MIR SINE MIR 45 183 -79 1306 174 9 9 chr6 100903327 100903546 -88376008 + MER20B DNA MER1_type 1 219 0 874 238 6 0 chr6 100905547 100905707 -88373847 + FRAM SINE Alu 2 162 -4 240 255 224 10 chr6 100906160 100906258 -88373296 + MIR3 SINE MIR 15 133 -75 1272 251 53 60 chr6 100906275 100906745 -88372809 - L2 LINE L2 -8 3305 2839 26 30 0 0 chr6 100907572 100907605 -88371949 + AT_rich Low_complexity Low_complexity 1 33 0 471 280 110 0 chr6 100907792 100907974 -88371580 - MIR SINE MIR -55 207 6 201 138 0 0 chr6 101008417 101008446 -88271108 + (CACCC)n Simple_repeat Simple_repeat 1 29 0 2337 113 0 0 chr6 101013771 101014081 -88265473 + AluSx SINE Alu 3 312 0 25 0 0 0 chr6 101014181 101014206 -88265348 + AT_rich Low_complexity Low_complexity 1 25 0 846 206 158 12 chr6 101014206 101014459 -88265095 - AluSx SINE Alu -12 290 1 25 51 0 0 chr6 101014572 101014611 -88264943 + AT_rich Low_complexity Low_complexity 1 39 0 251 359 89 58 chr6 101015538 101015831 -88263723 - L3b LINE CR1 -7 1576 1263 708 274 16 0 chr6 101015831 101016017 -88263537 - MER5A DNA MER1_type 0 189 1 251 359 89 58 chr6 101016017 101016172 -88263382 - L3b LINE CR1 -320 1263 1114 23 33 0 0 chr6 101016529 101016559 -88262995 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr6 101016926 101016957 -88262597 + AT_rich Low_complexity Low_complexity 1 31 0 350 326 170 0 chr6 101017744 101017885 -88261669 - L2 LINE L2 -3 3269 3105 354 278 212 20 chr6 101018977 101019175 -88260379 + MIR SINE MIR 17 252 -10 2101 137 0 3 chr6 101019624 101019930 -88259624 + AluSx SINE Alu 1 305 -7 1195 8 0 0 chr6 101022263 101022397 -88257157 - AluYa5/8 SINE Alu -4 306 173 548 252 72 12 chr6 101022490 101022697 -88256857 + MIR SINE MIR 28 252 -10 23 54 0 0 chr6 101022814 101022851 -88256703 + AT_rich Low_complexity Low_complexity 1 37 0 471 219 89 71 chr6 101022891 101023060 -88256494 - MIR SINE MIR -1 261 90 407 176 0 0 chr6 101023213 101023281 -88256273 + MER3 DNA MER1_type 42 109 -100 565 216 130 22 chr6 101023286 101023471 -88256083 + MIR SINE MIR 48 252 -10 359 287 174 14 chr6 101023852 101024267 -88255287 + L1MC4a LINE L1 5695 6175 -1633 352 276 143 112 chr6 101026029 101026475 -88253079 - L2 LINE L2 -4 3268 2809 241 353 47 26 chr6 101026702 101026892 -88252662 - L2 LINE L2 -571 2743 2550 308 309 43 124 chr6 101027017 101027188 -88252366 + L2 LINE L2 3014 3155 -117 1973 95 16 75 chr6 101027188 101027493 -88252061 - AluSc SINE Alu -22 287 1 308 309 43 124 chr6 101027493 101027603 -88251951 + L2 LINE L2 3155 3272 0 2265 109 3 6 chr6 101028098 101028411 -88251143 + AluSx SINE Alu 1 312 0 2839 16 0 0 chr6 101035363 101035681 -88243873 - AluYb8 SINE Alu 0 318 1 237 237 105 92 chr6 101036663 101036815 -88242739 + MIR SINE MIR 68 221 -41 413 243 76 49 chr6 101036920 101037064 -88242490 - MIR SINE MIR -14 248 101 357 328 8 16 chr6 101037280 101037402 -88242152 - MIR3 SINE MIR -87 121 1 189 296 0 0 chr6 101037813 101037857 -88241697 - L2 LINE L2 -8 3305 3262 346 239 292 0 chr6 101037917 101038030 -88241524 - MIR SINE MIR -61 201 56 21 0 0 0 chr6 101039160 101039181 -88240373 + GC_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr6 101039220 101039270 -88240284 + GC_rich Low_complexity Low_complexity 1 50 0 224 287 35 35 chr6 101043342 101043429 -88236125 + MIR SINE MIR 176 262 0 230 275 39 75 chr6 101043935 101044115 -88235439 + MIR3 SINE MIR 43 220 -31 1351 193 141 25 chr6 101044421 101044748 -88234806 + MLT1A1 LTR MaLR 1 365 0 205 269 0 15 chr6 101045356 101045423 -88234131 + GA-rich Low_complexity Low_complexity 1 66 0 30 27 0 0 chr6 101045700 101045737 -88233817 + AT_rich Low_complexity Low_complexity 1 37 0 939 238 67 76 chr6 101046281 101046622 -88232932 + MER20B DNA MER1_type 15 352 -431 372 194 129 50 chr6 101046748 101046857 -88232697 + MER20B DNA MER1_type 634 758 -25 2045 123 20 7 chr6 101046857 101047158 -88232396 + AluSq SINE Alu 1 305 -8 372 194 129 50 chr6 101047158 101047187 -88232367 + MER20B DNA MER1_type 758 783 0 385 308 75 0 chr6 101047765 101047885 -88231669 + L2 LINE L2 3185 3313 0 845 87 0 36 chr6 101048172 101048310 -88231244 + FLAM_C SINE Alu 1 133 0 2299 119 0 3 chr6 101048705 101049015 -88230539 + AluSx SINE Alu 1 309 -3 185 303 134 25 chr6 101050395 101050514 -88229040 - MIR3 SINE MIR -66 142 11 321 279 65 74 chr6 101051300 101051529 -88228025 + L1MEd LINE L1 965 1191 -4928 426 281 105 12 chr6 101051749 101052122 -88227432 - LTR33 LTR ERVL 0 521 73 314 234 11 21 chr6 101052494 101052588 -88226966 - MER34 LTR ERV1 -5 537 445 231 309 96 29 chr6 101052993 101053129 -88226425 - L2 LINE L2 -191 3081 2937 1009 240 15 33 chr6 101053627 101053898 -88225656 - MER39 LTR ERV1 -25 682 417 284 170 330 0 chr6 101053990 101054090 -88225464 - MER39 LTR ERV1 -574 133 1 1779 189 43 41 chr6 101054343 101054614 -88224940 + MER31B LTR ERV1 1 275 -191 1701 173 70 22 chr6 101054614 101054972 -88224582 + THE1C LTR MaLR 1 375 0 1779 189 43 41 chr6 101054972 101055165 -88224389 + MER31B LTR ERV1 275 466 0 2346 152 31 7 chr6 101056026 101056440 -88223114 + MSTA LTR MaLR 5 428 0 26 74 0 0 chr6 101058318 101058372 -88221182 + AT_rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr6 101058580 101058608 -88220946 + AT_rich Low_complexity Low_complexity 1 28 0 2790 224 55 90 chr6 101058667 101059779 -88219775 + L1MC5 LINE L1 6628 7777 -184 219 36 0 0 chr6 101059779 101059807 -88219747 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 2254 86 0 0 chr6 101059814 101060093 -88219461 - AluSg SINE Alu -31 279 1 2790 224 55 90 chr6 101060093 101060308 -88219246 + L1MC5 LINE L1 7783 7917 -44 23 0 0 0 chr6 101060915 101060938 -88218616 + AT_rich Low_complexity Low_complexity 1 23 0 199 326 58 0 chr6 101060939 101061025 -88218529 + L2 LINE L2 3223 3313 0 5892 163 15 13 chr6 101061177 101062598 -88216956 - L1MC1 LINE L1 -17 6316 4898 242 349 98 51 chr6 101063312 101063627 -88215927 - L2 LINE L2 0 3313 2984 * 330 385 31 21 chr6 101063612 101063937 -88215617 + L2 LINE L2 377 704 -2610 450 301 116 23 chr6 101063937 101064110 -88215444 + MER91B DNA MER1_type 2 190 0 858 357 43 16 chr6 101064110 101064600 -88214954 + L2 LINE L2 696 1198 -2116 380 372 68 11 chr6 101064607 101064798 -88214756 + L2 LINE L2 2823 3024 -289 599 259 121 34 chr6 101064811 101065050 -88214504 - MIR SINE MIR -2 260 1 372 321 53 15 chr6 101065188 101065319 -88214235 + L2 LINE L2 3136 3271 -1 655 270 165 13 chr6 101066648 101066963 -88212591 + LTR16C LTR ERVL 120 482 -9 2083 157 14 11 chr6 101066964 101067328 -88212226 + MLT1A1 LTR MaLR 1 365 0 210 136 34 17 chr6 101067467 101067526 -88212028 + CT-rich Low_complexity Low_complexity 2 61 0 590 131 22 28 chr6 101067780 101067909 -88211645 - L1MB8 LINE L1 -24 6154 6025 271 298 40 40 chr6 101067928 101068052 -88211502 - L2 LINE L2 -15 3257 3134 666 319 32 62 chr6 101068271 101068441 -88211113 - L2 LINE L2 -411 2903 2729 2457 71 0 10 chr6 101068441 101068750 -88210804 - AluSc SINE Alu -3 306 1 666 319 32 62 chr6 101068750 101068984 -88210570 - L2 LINE L2 -585 2729 2511 181 284 91 45 chr6 101070201 101070289 -88209265 - L2 LINE L2 -4 3268 3177 310 366 36 31 chr6 101070362 101070556 -88208998 - L2 LINE L2 -183 3089 2895 317 313 0 0 chr6 101072139 101072222 -88207332 + L2 LINE L2 3177 3259 -13 396 59 0 0 chr6 101072222 101072273 -88207281 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 565 244 15 0 chr6 101072372 101072503 -88207051 + MER94 DNA DNA 2 134 0 212 186 85 17 chr6 101072734 101072793 -88206761 + L2 LINE L2 3236 3298 -15 1340 102 17 34 chr6 101073301 101073537 -88206017 + L1MA3 LINE L1 3157 3388 -4177 1653 110 23 0 chr6 101073544 101073763 -88205791 + AluSg SINE Alu 1 224 -86 8706 130 24 3 chr6 101073865 101076318 -88203236 + L1MA3 LINE L1 5172 7682 -42 434 345 12 12 chr6 101077183 101077435 -88202119 + HAL1 LINE L1 1433 1684 -823 7136 126 48 3 chr6 101077619 101078795 -88200759 - Tigger3b DNA MER2_type 0 1231 4 256 157 98 0 chr6 101079849 101079900 -88199654 + MLT1K LTR MaLR 524 579 -9 2092 127 3 3 chr6 101080615 101080914 -88198640 - AluSx SINE Alu -13 299 1 25 31 0 0 chr6 101081659 101081691 -88197863 + AT_rich Low_complexity Low_complexity 1 32 0 1703 169 61 0 chr6 101082350 101082676 -88196878 + MER7A DNA MER2_type 3 346 0 337 139 69 0 chr6 101084488 101084560 -88194994 + MER116 DNA Mariner 1 77 -3 1102 287 20 25 chr6 101085059 101085467 -88194087 + MLT1I LTR MaLR 1 406 -3 273 75 0 0 chr6 101085793 101085833 -88193721 + (TC)n Simple_repeat Simple_repeat 2 41 0 336 48 0 0 chr6 101085833 101085875 -88193679 + (CA)n Simple_repeat Simple_repeat 1 42 0 1992 164 2 56 chr6 101087345 101087753 -88191801 - MLT1B LTR MaLR 0 390 5 967 213 15 0 chr6 101087927 101088129 -88191425 - MER3 DNA MER1_type -4 205 1 525 274 151 19 chr6 101088694 101088906 -88190648 + MIR SINE MIR 23 262 0 23 0 0 0 chr6 101089471 101089494 -88190060 + AT_rich Low_complexity Low_complexity 1 23 0 390 266 35 63 chr6 101090688 101090831 -88188723 - L2 LINE L2 0 3313 3175 287 304 13 0 chr6 101090852 101090931 -88188623 - MIR SINE MIR -109 153 74 26 0 0 0 chr6 101091542 101091568 -88187986 + AT_rich Low_complexity Low_complexity 1 26 0 196 69 0 0 chr6 101092086 101092115 -88187439 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2267 85 0 0 chr6 101092115 101092398 -88187156 - AluY SINE Alu -1 311 1 198 209 0 0 chr6 101092493 101092536 -88187018 + GA-rich Low_complexity Low_complexity 2 44 0 375 350 25 6 chr6 101093108 101093271 -88186283 + MIR SINE MIR 46 211 -51 2446 71 0 0 chr6 101093460 101093757 -88185797 - AluY SINE Alu -14 297 1 403 221 21 28 chr6 101093882 101094027 -88185527 + (TG)n Simple_repeat Simple_repeat 1 144 0 21 36 0 0 chr6 101094172 101094200 -88185354 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr6 101095323 101095352 -88184202 + (TG)n Simple_repeat Simple_repeat 2 30 0 740 157 0 0 chr6 101095468 101095583 -88183971 - FRAM SINE Alu -24 152 38 1246 259 88 33 chr6 101096346 101096719 -88182835 + MLT1J1 LTR MaLR 3 403 -43 1942 125 43 0 chr6 101096719 101096999 -88182555 - AluSx SINE Alu -15 297 6 1246 259 88 33 chr6 101096999 101097046 -88182508 + MLT1J1 LTR MaLR 403 446 0 1735 169 67 20 chr6 101097412 101097768 -88181786 - THE1C LTR MaLR -2 373 1 903 266 40 12 chr6 101098490 101098742 -88180812 - L1ME3A LINE L1 -5 6165 5907 367 262 42 9 chr6 101098743 101098868 -88180686 - L1ME3A LINE L1 -570 5600 5476 1976 268 108 17 chr6 101099103 101099767 -88179787 + L1MA8 LINE L1 466 1190 -6299 16178 186 27 33 chr6 101099803 101101225 -88178329 + L1MA8 LINE L1 2008 3437 -4273 946 225 0 0 chr6 101101225 101101398 -88178156 + FAM SINE Alu 1 173 -2 16178 186 27 33 chr6 101101398 101102552 -88177002 + L1MA8 LINE L1 3437 4596 -3114 1873 151 20 3 chr6 101102552 101102851 -88176703 + AluSx SINE Alu 1 304 -8 16178 186 27 33 chr6 101102851 101106006 -88173548 + L1MA8 LINE L1 4596 7710 0 443 275 48 66 chr6 101106019 101106474 -88173080 - L1MC5 LINE L1 -189 7772 7326 254 321 36 22 chr6 101106485 101106622 -88172932 - L1MD3 LINE L1 -456 7539 7401 186 333 0 0 chr6 101108209 101108263 -88171291 + L2 LINE L2 3214 3267 -5 559 171 38 0 chr6 101109703 101109808 -88169746 + Tigger5 DNA MER2_type 2215 2323 0 716 251 30 47 chr6 101109815 101110153 -88169401 + L1ME3A LINE L1 4942 5273 -873 1715 141 16 59 chr6 101110197 101110501 -88169053 + AluSx SINE Alu 1 291 -21 848 317 13 17 chr6 101110705 101110722 -88168832 + L1ME3A LINE L1 5354 5370 -800 1639 184 14 0 chr6 101110722 101111005 -88168549 + AluJb SINE Alu 6 292 -20 303 28 0 0 chr6 101111015 101111051 -88168503 + (TG)n Simple_repeat Simple_repeat 1 36 0 848 317 13 17 chr6 101111051 101111416 -88168138 + L1ME3A LINE L1 5379 5751 -419 336 27 41 41 chr6 101111419 101111492 -88168062 + (TA)n Simple_repeat Simple_repeat 1 73 0 2658 93 0 16 chr6 101111492 101111867 -88167687 - L1PA7 LINE L1 -16 6138 5770 10439 82 3 4 chr6 101111867 101113316 -88166238 - L1PA7 LINE L1 -830 5316 3870 338 268 89 26 chr6 101113314 101113504 -88166050 + L1ME3A LINE L1 5746 5947 -223 * 27 39 0 19 chr6 101113573 101113590 -88165964 + AT_rich Low_complexity Low_complexity 1 17 -34 2560 58 0 0 chr6 101113590 101113899 -88165655 - AluY SINE Alu -2 309 1 27 39 0 19 chr6 101113899 101113933 -88165621 + AT_rich Low_complexity Low_complexity 17 51 0 24 91 0 0 chr6 101114157 101114223 -88165331 + AT_rich Low_complexity Low_complexity 1 66 0 33 25 0 0 chr6 101114645 101114685 -88164869 + AT_rich Low_complexity Low_complexity 1 40 0 2222 110 0 0 chr6 101114882 101115183 -88164371 - AluSc SINE Alu -8 301 1 316 292 79 0 chr6 101116730 101116819 -88162735 + MIR SINE MIR 44 139 -123 1224 136 23 32 chr6 101116843 101117063 -88162491 - MER20 DNA MER1_type 0 219 2 513 293 51 19 chr6 101117078 101117293 -88162261 - MIR SINE MIR -30 232 11 568 247 28 28 chr6 101117646 101117824 -88161730 - MER5B DNA MER1_type 0 178 1 23 0 0 0 chr6 101118124 101118147 -88161407 + AT_rich Low_complexity Low_complexity 1 23 0 495 259 122 38 chr6 101118154 101118474 -88161080 + L1ME4a LINE L1 5742 6088 -33 1133 183 0 0 chr6 101118527 101118702 -88160852 + FAM SINE Alu 1 175 0 22 0 0 0 chr6 101120280 101120302 -88159252 + AT_rich Low_complexity Low_complexity 1 22 0 621 169 15 15 chr6 101121280 101121410 -88158144 + L1MC4 LINE L1 7732 7861 -181 429 128 21 11 chr6 101121426 101121520 -88158034 + (TA)n Simple_repeat Simple_repeat 1 95 0 347 240 93 8 chr6 101121552 101121681 -88157873 + L1MC4 LINE L1 7902 8041 -1 269 335 6 19 chr6 101122817 101122975 -88156579 + (TGAA)n Simple_repeat Simple_repeat 2 157 0 * 441 279 11 22 chr6 101122865 101123044 -88156510 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 331 257 143 0 chr6 101123382 101123487 -88156067 - L2 LINE L2 -5 3267 3148 2108 100 7 0 chr6 101123615 101123930 -88155624 - AluY SINE Alu 0 317 1 39990 72 6 9 chr6 101124178 101130328 -88149226 + L1PA6 LINE L1 11 6149 -5 342 254 176 18 chr6 101130741 101130906 -88148648 + MIR SINE MIR 6 196 -66 183 200 25 0 chr6 101131034 101131074 -88148480 + L2 LINE L2 3216 3256 -16 372 299 174 0 chr6 101131235 101131402 -88148152 - MER91A DNA MER1_type 0 196 1 21 0 0 0 chr6 101132509 101132530 -88147024 + AT_rich Low_complexity Low_complexity 1 21 0 278 296 68 62 chr6 101132732 101132908 -88146646 - MIR SINE MIR -66 196 20 222 265 0 0 chr6 101133742 101133791 -88145763 + L2 LINE L2 3265 3313 0 2393 79 0 0 chr6 101134704 101134994 -88144560 - AluSc SINE Alu -19 290 1 180 0 0 0 chr6 101137610 101137630 -88141924 + (TTTTTA)n Simple_repeat Simple_repeat 4 23 0 3414 48 0 0 chr6 101137630 101138049 -88141505 - L1PA5 LINE L1 0 6154 5736 383 336 64 0 chr6 101140104 101140229 -88139325 + MIR3 SINE MIR 12 144 -64 409 282 69 30 chr6 101140241 101140372 -88139182 - L2 LINE L2 0 3272 3137 444 282 21 65 chr6 101141165 101141505 -88138049 + L1MC/D LINE L1 5475 5791 -740 389 323 99 50 chr6 101142226 101142650 -88136904 - L2 LINE L2 -1048 2266 1822 199 242 65 16 chr6 101142890 101142952 -88136602 + L3 LINE CR1 1511 1575 -2 335 269 25 17 chr6 101143412 101143531 -88136023 + LTR67 LTR ERVL 417 536 -21 2541 54 0 6 chr6 101143573 101143886 -88135668 + AluY SINE Alu 1 311 0 478 274 144 0 chr6 101145254 101145407 -88134147 + MIR3 SINE MIR 19 193 -15 195 114 0 0 chr6 101147038 101147073 -88132481 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1206 60 11 22 chr6 101148416 101148598 -88130956 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2075 138 7 0 chr6 101148606 101148911 -88130643 - AluSq SINE Alu -6 307 1 264 286 43 29 chr6 101148951 101149091 -88130463 - L1MC/D LINE L1 -2088 5720 5579 21 57 0 0 chr6 101149245 101149280 -88130274 + AT_rich Low_complexity Low_complexity 1 35 0 355 263 117 17 chr6 101149850 101150090 -88129464 - L1MC/D LINE L1 -2250 5558 5295 225 0 0 0 chr6 101150790 101150815 -88128739 + (TG)n Simple_repeat Simple_repeat 2 26 0 822 326 94 15 chr6 101151003 101151479 -88128075 + MLT1L LTR MaLR 93 606 -9 280 229 16 0 chr6 101151654 101151715 -88127839 + MIR SINE MIR 65 126 -136 1009 136 0 0 chr6 101151727 101151874 -88127680 + AluSg/x SINE Alu 139 285 -27 351 0 0 0 chr6 101151874 101151913 -88127641 + (CA)n Simple_repeat Simple_repeat 2 40 0 1711 202 111 24 chr6 101151923 101152417 -88127137 - HsTC2c DNA Tc2 -2 727 191 1112 276 127 16 chr6 101153485 101154187 -88125367 - L2 LINE L2 -1 3312 2440 259 211 67 11 chr6 101154218 101154308 -88125246 - L1ME4a LINE L1 -6 6115 6021 1026 100 0 0 chr6 101154372 101154552 -88125002 + (TA)n Simple_repeat Simple_repeat 1 180 0 4037 239 83 15 chr6 101154774 101156933 -88122621 - L1M1 LINE L1 -4118 2092 1 407 162 0 0 chr6 101156932 101157000 -88122554 - L1MD3 LINE L1 -1011 6984 6917 * 26 50 0 0 chr6 101157053 101157093 -88122461 + AT_rich Low_complexity Low_complexity 1 40 0 465 317 33 11 chr6 101157144 101157324 -88122230 - L2 LINE L2 -900 2414 2231 258 185 37 49 chr6 101157348 101157429 -88122125 - L1ME4a LINE L1 -67 6054 5975 2378 93 0 10 chr6 101158294 101158605 -88120949 + AluSg SINE Alu 1 308 -2 21 36 0 0 chr6 101158661 101158689 -88120865 + AT_rich Low_complexity Low_complexity 1 28 0 1744 157 63 20 chr6 101158765 101159064 -88120490 + AluJb SINE Alu 1 312 0 2423 201 69 51 chr6 101159838 101160887 -88118667 + L1MDa LINE L1 1826 2903 -3637 181 147 235 0 chr6 101160998 101161032 -88118522 + MIR3 SINE MIR 117 158 -50 440 282 104 52 chr6 101162125 101162522 -88117032 + L1MEd LINE L1 979 1489 -1087 545 305 29 0 chr6 101162549 101162759 -88116795 + HAL1 LINE L1 1438 1653 -854 1661 129 21 0 chr6 101162834 101163075 -88116479 - AluSq SINE Alu -67 246 1 328 244 18 15 chr6 101163450 101163603 -88115951 + L1MEd LINE L1 2246 2362 -3853 3797 81 49 0 chr6 101164059 101164587 -88114967 - MER41A LTR ERV1 0 554 1 327 187 67 60 chr6 101166856 101166990 -88112564 - LTR19A LTR ERV1 -10 476 342 2159 122 53 64 chr6 101168373 101168842 -88110712 - MLT1C LTR MaLR -3 464 1 337 268 158 31 chr6 101170986 101171113 -88108441 + MIR SINE MIR 7 145 -63 288 243 149 9 chr6 101172800 101172907 -88106647 - MLT1L LTR MaLR -71 544 423 285 264 121 71 chr6 101173027 101173266 -88106288 - MLT1L LTR MaLR -364 251 1 324 304 138 24 chr6 101173319 101173608 -88105946 + LTR33 LTR ERVL 192 513 -8 222 208 0 0 chr6 101173712 101173760 -88105794 + (TA)n Simple_repeat Simple_repeat 1 48 0 934 264 45 25 chr6 101173799 101174537 -88105017 - L1MC4a LINE L1 -452 6112 5545 1369 255 80 5 chr6 101174680 101175119 -88104435 - L1MD2 LINE L1 -221 6138 5667 * 1924 229 89 11 chr6 101175118 101175837 -88103717 - L1MC4a LINE L1 -976 5564 4790 4792 220 58 39 chr6 101175868 101177092 -88102462 - L1MDa LINE L1 -2274 4266 3067 198 0 0 0 chr6 101177092 101177114 -88102440 + (TG)n Simple_repeat Simple_repeat 1 22 0 1848 146 41 0 chr6 101177114 101177382 -88102172 - AluSx SINE Alu -33 279 1 4792 220 58 39 chr6 101177382 101178022 -88101532 - L1MDa LINE L1 -3473 3067 2351 1533 211 29 32 chr6 101178022 101178397 -88101157 + MLT1A2 LTR MaLR 1 374 0 4792 220 58 39 chr6 101178397 101178526 -88101028 - L1MDa LINE L1 -4189 2351 2226 272 196 0 18 chr6 101178926 101178982 -88100572 + MLT1K LTR MaLR 188 242 -346 1142 176 9 5 chr6 101179117 101179327 -88100227 + MLT1A1 LTR MaLR 155 365 0 4870 161 41 95 chr6 101180324 101181750 -88097804 - MER52A LTR ERV1 0 1755 308 270 291 112 30 chr6 101182278 101182412 -88097142 + MIR SINE MIR 4 148 -114 195 271 12 71 chr6 101182536 101182621 -88096933 - L2 LINE L2 0 3313 3234 270 81 0 0 chr6 101183803 101183840 -88095714 + (CAT)n Simple_repeat Simple_repeat 3 39 0 212 247 82 14 chr6 101183843 101183916 -88095638 - L2 LINE L2 -11 3261 3184 729 205 6 12 chr6 101184225 101184391 -88095163 - L1PB4 LINE L1 -1 6155 5991 327 96 0 0 chr6 101184598 101184650 -88094904 + (TC)n Simple_repeat Simple_repeat 1 52 0 575 282 23 88 chr6 101185029 101185334 -88094220 + L2 LINE L2 3029 3313 0 327 281 92 0 chr6 101185503 101185656 -88093898 - L1ME4a LINE L1 -201 5920 5754 1976 125 7 0 chr6 101185668 101185978 -88093576 - AluSq SINE Alu 0 314 3 1779 184 43 30 chr6 101186167 101186703 -88092851 + MLT2A2 LTR ERVL 6 554 0 445 304 56 0 chr6 101187197 101187447 -88092107 - L1ME4a LINE L1 -381 5740 5477 7576 24 4 4 chr6 101187711 101189266 -88090288 + L1PA3 LINE L1 4601 6155 0 1475 169 67 11 chr6 101189291 101189558 -88089996 + AluJo SINE Alu 1 282 -30 1796 158 16 35 chr6 101189651 101189967 -88089587 - AluJb SINE Alu -2 310 1 22 56 0 0 chr6 101190883 101190919 -88088635 + AT_rich Low_complexity Low_complexity 1 36 0 468 341 158 23 chr6 101193985 101194515 -88085039 + L1 LINE L1 3220 3821 -2325 553 331 165 31 chr6 101195001 101195683 -88083871 + L2 LINE L2 1419 2219 -1095 975 189 189 0 chr6 101195683 101195953 -88083601 + MER33 DNA MER1_type 1 321 -3 553 331 165 31 chr6 101195953 101196046 -88083508 + L2 LINE L2 2219 2298 -1016 324 236 122 0 chr6 101196071 101196194 -88083360 + LTR50 LTR ERVL 1 138 -657 615 216 153 30 chr6 101196299 101196600 -88082954 + LTR50 LTR ERVL 458 795 0 426 350 145 16 chr6 101196611 101196977 -88082577 + L2 LINE L2 2333 2745 -569 195 299 58 11 chr6 101196971 101197058 -88082496 + L2 LINE L2 2953 3043 -229 * 351 0 0 0 chr6 101197095 101197134 -88082420 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 348 335 99 12 chr6 101197243 101197485 -88082069 + L1ME4a LINE L1 3700 3962 -2184 658 189 39 0 chr6 101198099 101198226 -88081328 + FLAM_A SINE Alu 1 132 -1 1456 161 34 4 chr6 101198226 101198487 -88081067 + L1PB4 LINE L1 5886 6154 -2 44 56 0 0 chr6 101198487 101198559 -88080995 + AT_rich Low_complexity Low_complexity 1 72 0 1277 113 6 0 chr6 101198770 101198947 -88080607 + AluY SINE Alu 128 305 -6 395 313 129 17 chr6 101199014 101199450 -88080104 + L1ME4a LINE L1 5122 5603 -518 2088 113 6 34 chr6 101199771 101200091 -88079463 + AluSq SINE Alu 1 311 -2 286 254 18 26 chr6 101200406 101200520 -88079034 + L1ME4a LINE L1 5936 6048 -73 1795 162 53 109 chr6 101200773 101201224 -88078330 - MSTB LTR MaLR 0 426 1 6240 128 17 33 chr6 101201341 101201460 -88078094 + L1MA3 LINE L1 4542 4661 -1644 1990 126 39 0 chr6 101201460 101201746 -88077808 + AluSx SINE Alu 1 297 -15 6240 128 17 33 chr6 101201746 101202441 -88077113 + L1MA3 LINE L1 4661 5366 -939 1365 157 120 22 chr6 101202441 101202708 -88076846 + AluJb SINE Alu 3 295 -17 6240 128 17 33 chr6 101202708 101203664 -88075890 + L1MA3 LINE L1 5366 6302 -3 998 220 152 61 chr6 101203942 101204485 -88075069 + L1MC5 LINE L1 7180 7798 -163 23519 34 0 0 chr6 101204485 101208150 -88071404 + L1PA3 LINE L1 2521 6183 0 998 220 152 61 chr6 101208150 101208278 -88071276 + L1MC5 LINE L1 7798 7913 -48 24 77 0 0 chr6 101208403 101208455 -88071099 + AT_rich Low_complexity Low_complexity 1 52 0 27 0 0 0 chr6 101209182 101209209 -88070345 + AT_rich Low_complexity Low_complexity 1 27 0 183 80 0 0 chr6 101209745 101209770 -88069784 + (TG)n Simple_repeat Simple_repeat 2 26 0 305 325 26 18 chr6 101210795 101210909 -88068645 - MIR SINE MIR -76 132 18 611 241 38 0 chr6 101211462 101211595 -88067959 + MIR SINE MIR 124 261 -1 555 278 74 48 chr6 101211610 101211840 -88067714 - L2 LINE L2 -37 3235 3000 753 343 92 38 chr6 101211859 101212702 -88066852 - L2 LINE L2 -556 2758 1870 210 192 0 0 chr6 101212745 101212797 -88066757 + (TG)n Simple_repeat Simple_repeat 1 52 0 3034 208 91 26 chr6 101213386 101214253 -88065301 - L1MD1 LINE L1 -11 6231 5296 279 0 0 0 chr6 101214253 101214284 -88065270 + (TG)n Simple_repeat Simple_repeat 2 32 0 3034 208 91 26 chr6 101214284 101214501 -88065053 - L1MD1 LINE L1 -946 5296 5095 586 157 14 134 chr6 101214588 101214636 -88064918 + L1MC5 LINE L1 7744 7796 -165 2706 108 28 21 chr6 101214636 101215061 -88064493 - MSTA LTR MaLR 0 428 1 586 157 14 134 chr6 101215061 101215229 -88064325 + L1MC5 LINE L1 7796 7934 -27 323 280 18 64 chr6 101215232 101215450 -88064104 + L1ME LINE L1 5610 5817 -304 8118 106 16 42 chr6 101215940 101217271 -88062283 - HSMAR2 DNA Mariner -1 1301 5 2470 189 97 0 chr6 101217418 101217932 -88061622 + MLT1F1 LTR MaLR 1 564 -3 182 309 32 43 chr6 101219290 101219384 -88060170 + L3 LINE CR1 612 704 -873 32298 35 1 200 chr6 101219590 101227321 -88052233 + L1PA3 LINE L1 1 6155 0 21 0 0 0 chr6 101228284 101228305 -88051249 + AT_rich Low_complexity Low_complexity 1 21 0 675 283 56 34 chr6 101228580 101228813 -88050741 + MIR SINE MIR 15 252 -10 233 329 24 24 chr6 101228926 101229008 -88050546 + L3 LINE CR1 1490 1571 -6 194 184 48 19 chr6 101229546 101229649 -88049905 + CT-rich Low_complexity Low_complexity 1 106 0 261 273 0 13 chr6 101229912 101229989 -88049565 - MIR SINE MIR 0 262 187 584 299 86 18 chr6 101230025 101230246 -88049308 - MIR SINE MIR -25 237 2 232 295 107 9 chr6 101230781 101230893 -88048661 + L1ME LINE L1 5503 5595 -526 1081 194 86 68 chr6 101231269 101231605 -88047949 + MER2 DNA MER2_type 2 343 -1 975 216 143 14 chr6 101231850 101232207 -88047347 - HAL1 LINE L1 -631 1876 1474 376 298 89 27 chr6 101232615 101232811 -88046743 + MIR SINE MIR 16 221 -41 26 0 0 0 chr6 101233315 101233341 -88046213 + AT_rich Low_complexity Low_complexity 1 26 0 591 227 0 8 chr6 101233712 101233831 -88045723 - L2 LINE L2 -5 3308 3191 516 296 11 12 chr6 101234946 101235107 -88044447 - MIR3 SINE MIR -1 207 46 222 91 0 0 chr6 101235673 101235706 -88043848 + (TG)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr6 101235839 101235861 -88043693 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 101236739 101236762 -88042792 + AT_rich Low_complexity Low_complexity 1 23 0 252 183 86 86 chr6 101237136 101237229 -88042325 - MER103 DNA DNA -71 95 3 818 322 84 26 chr6 101237397 101237823 -88041731 - L3 LINE CR1 -127 1450 1000 326 229 229 0 chr6 101237834 101237952 -88041602 - LTR16A LTR ERVL -5 445 301 406 276 9 0 chr6 101238086 101238202 -88041352 - LTR16A LTR ERVL -316 134 18 1263 292 75 43 chr6 101238219 101239083 -88040471 - L2 LINE L2 -498 2816 1925 636 259 174 25 chr6 101239318 101239681 -88039873 - MLT1D LTR MaLR 0 505 89 694 230 59 8 chr6 101239683 101239959 -88039595 - MLT1-int LTR MaLR -964 407 1 212 268 36 0 chr6 101240894 101240950 -88038604 - L3 LINE CR1 -615 962 905 1223 235 124 13 chr6 101241329 101241724 -88037830 + LTR40b LTR ERVL 22 460 -2 241 318 72 23 chr6 101242331 101242463 -88037091 + MIR SINE MIR 36 173 -60 739 266 91 65 chr6 101242469 101242656 -88036898 - L2 LINE L2 -1 3312 3132 2240 108 0 37 chr6 101242656 101242980 -88036574 + AluSx SINE Alu 1 312 0 739 266 91 65 chr6 101242980 101243164 -88036390 - L2 LINE L2 -181 3132 2931 208 147 0 0 chr6 101243254 101243288 -88036266 + (T)n Simple_repeat Simple_repeat 1 34 0 2039 143 0 7 chr6 101244575 101244876 -88034678 - AluSx SINE Alu -13 299 1 225 0 0 0 chr6 101247771 101247796 -88031758 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 214 339 0 15 chr6 101249831 101249896 -88029658 + MIR3 SINE MIR 3 66 -142 8334 54 1 0 chr6 101250363 101251328 -88028226 + LTR5 LTR ERVK 1 966 -3 325 295 90 16 chr6 101251758 101251880 -88027674 - L2 LINE L2 -6 3266 3136 213 307 171 18 chr6 101252038 101252266 -88027288 - L2 LINE L2 -366 2948 2686 531 272 147 16 chr6 101252453 101252766 -88026788 + MLT1K LTR MaLR 235 588 0 613 322 76 31 chr6 101252768 101253218 -88026336 - L2 LINE L2 -667 2647 2178 1987 192 63 36 chr6 101254804 101255323 -88024231 - MER41B LTR ERV1 0 601 108 207 297 14 0 chr6 101255762 101255836 -88023718 + (TAA)n Simple_repeat Simple_repeat 3 77 0 346 311 0 0 chr6 101255877 101255967 -88023587 - MIR SINE MIR -109 153 64 1054 170 22 11 chr6 101256027 101256209 -88023345 - MER5A DNA MER1_type -3 186 3 21 0 0 0 chr6 101256214 101256235 -88023319 + AT_rich Low_complexity Low_complexity 1 21 0 2130 264 72 32 chr6 101256924 101258598 -88020956 - L1ME3A LINE L1 -10 6396 4618 4811 50 40 0 chr6 101258598 101259202 -88020352 + L1PA5 LINE L1 5526 6153 -1 2130 264 72 32 chr6 101259202 101259501 -88020053 - L1ME3A LINE L1 -1788 4618 4332 36060 87 7 8 chr6 101259503 101265652 -88013902 + L1PA6 LINE L1 11 6154 0 1250 286 108 21 chr6 101265618 101266432 -88013122 - L1ME3A LINE L1 -2011 4371 3487 * 22 35 0 0 chr6 101266684 101266713 -88012841 + AT_rich Low_complexity Low_complexity 1 29 0 760 267 26 45 chr6 101266869 101267337 -88012217 - L1ME3A LINE L1 -2978 3404 2946 981 274 66 58 chr6 101267344 101267533 -88012021 - L1ME3A LINE L1 -4027 2536 2350 1977 174 0 0 chr6 101267533 101267832 -88011722 - AluSx SINE Alu -13 299 1 981 274 66 58 chr6 101267832 101268139 -88011415 - L1ME3A LINE L1 -4213 2350 2036 371 277 21 37 chr6 101268418 101268606 -88010948 - L1ME3A LINE L1 -4905 1479 1295 258 32 0 0 chr6 101268609 101268640 -88010914 + (TC)n Simple_repeat Simple_repeat 1 31 0 379 260 80 54 chr6 101268689 101268879 -88010675 - L1MDa LINE L1 -5145 1237 978 450 36 0 0 chr6 101269251 101269307 -88010247 + (CA)n Simple_repeat Simple_repeat 1 56 0 915 293 56 20 chr6 101270113 101270468 -88009086 + LTR16B LTR ERVL 97 464 0 888 199 27 16 chr6 101270744 101270930 -88008624 - AluJo SINE Alu -5 307 120 332 301 77 58 chr6 101272638 101273003 -88006551 - MLT1K LTR MaLR -2 586 215 344 307 40 0 chr6 101273213 101273314 -88006240 + MIR3 SINE MIR 91 195 -13 262 268 58 14 chr6 101274430 101274568 -88004986 + HAL1 LINE L1 1255 1398 -1109 27 96 0 0 chr6 101274927 101275010 -88004544 + AT_rich Low_complexity Low_complexity 1 83 0 273 152 61 0 chr6 101275072 101275138 -88004416 + L1ME1 LINE L1 6096 6165 -1 232 302 28 0 chr6 101275140 101275246 -88004308 + (CATATA)n Simple_repeat Simple_repeat 3 111 0 40100 39 22 3 chr6 101275274 101281306 -87998248 + L1PA3 LINE L1 5 6155 0 1596 256 21 33 chr6 101281406 101282105 -87997449 + L1ME3A LINE L1 3918 4608 -1538 396 125 0 0 chr6 101282114 101282178 -87997376 + (TGG)n Simple_repeat Simple_repeat 1 64 0 393 278 135 8 chr6 101282190 101282442 -87997112 + L1ME3A LINE L1 4626 4909 -1237 832 206 12 12 chr6 101282590 101282755 -87996799 - FRAM SINE Alu -14 162 1 204 40 0 0 chr6 101282942 101282967 -87996587 + (T)n Simple_repeat Simple_repeat 1 25 0 2228 62 34 31 chr6 101282967 101283292 -87996262 - LTR17 LTR ERV1 -454 326 1 2261 62 3 0 chr6 101283292 101283583 -87995971 - HERV17 LTR ERV1 0 8626 8335 261 103 0 0 chr6 101283573 101283612 -87995942 - HERV17 LTR ERV1 -1078 7548 7510 * 33872 49 8 4 chr6 101283602 101287931 -87991623 - HERV17 LTR ERV1 -2604 6022 1678 13204 57 36 13 chr6 101287927 101289749 -87989805 - HERV17 LTR ERV1 -6763 1863 1 * 3948 51 4 19 chr6 101289749 101290281 -87989273 - LTR17 LTR ERV1 0 780 257 1836 248 82 31 chr6 101290281 101291115 -87988439 + L1ME3A LINE L1 5261 6136 -34 2416 86 0 0 chr6 101291145 101291447 -87988107 + AluY SINE Alu 1 302 -9 2041 110 7 26 chr6 101291762 101292071 -87987483 - AluSx SINE Alu -9 303 1 182 226 57 94 chr6 101292251 101292357 -87987197 - MIR SINE MIR -70 192 91 25 0 0 0 chr6 101292562 101292587 -87986967 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr6 101292673 101292703 -87986851 + AT_rich Low_complexity Low_complexity 1 30 0 451 329 122 14 chr6 101293027 101293157 -87986397 + L1M4 LINE L1 2149 2264 -3882 2121 144 76 29 chr6 101293157 101293566 -87985988 + MSTA LTR MaLR 1 428 0 451 329 122 14 chr6 101293566 101293925 -87985629 + L1M4 LINE L1 2264 2691 -3455 916 135 30 35 chr6 101293931 101294131 -87985423 - L1MA7 LINE L1 0 6291 6093 25 0 0 0 chr6 101295794 101295819 -87983735 + AT_rich Low_complexity Low_complexity 1 25 0 2066 212 20 22 chr6 101296498 101297008 -87982546 - L1ME1 LINE L1 -3 6232 5724 715 219 37 14 chr6 101297008 101297223 -87982331 - L1ME1 LINE L1 -1290 4925 4706 1114 254 14 44 chr6 101297228 101297631 -87981923 - MLT2C1 LTR ERVL -5 658 8 637 234 65 5 chr6 101297639 101297823 -87981731 - L1ME1 LINE L1 -1501 4714 4520 * 3477 255 82 12 chr6 101297808 101299209 -87980345 - L1ME1 LINE L1 -2624 3591 2136 3886 221 49 33 chr6 101299227 101300501 -87979053 + L1MD2 LINE L1 5056 6346 -13 25851 30 0 0 chr6 101302080 101305983 -87973571 + L1PA3 LINE L1 2255 6155 0 1693 179 51 62 chr6 101306501 101306970 -87972584 + MLT1C LTR MaLR 1 464 -3 28 48 0 0 chr6 101307022 101307064 -87972490 + AT_rich Low_complexity Low_complexity 1 42 0 29 28 0 0 chr6 101307408 101307444 -87972110 + AT_rich Low_complexity Low_complexity 1 36 0 1423 171 28 25 chr6 101307537 101307660 -87971894 - MER33 DNA MER1_type -2262 323 202 3603 172 79 12 chr6 101307660 101308346 -87971208 + MER44D DNA MER2_type 2 605 0 1423 171 28 25 chr6 101308346 101308544 -87971010 - MER33 DNA MER1_type -2383 202 1 2007 134 7 0 chr6 101308681 101308972 -87970582 + AluSq SINE Alu 1 293 -20 2541 148 20 4 chr6 101309404 101309862 -87969692 + L1MB3 LINE L1 5719 6183 0 262 226 43 32 chr6 101311196 101311289 -87968265 - L1ME4a LINE L1 -43 6078 5985 2921 215 31 58 chr6 101311345 101311374 -87968180 - L1ME2 LINE L1 -3 6161 6133 1336 240 100 61 chr6 101311374 101311895 -87967659 - MLT1F LTR MaLR -1 541 1 2921 215 31 58 chr6 101311895 101313310 -87966244 - L1ME2 LINE L1 -31 6133 4734 829 287 79 23 chr6 101313300 101313861 -87965693 - L1ME4a LINE L1 -218 5903 5312 * 25 0 0 0 chr6 101313939 101313964 -87965590 + AT_rich Low_complexity Low_complexity 1 25 0 225 272 54 33 chr6 101314940 101315032 -87964522 - MIR SINE MIR -101 161 68 1963 164 3 0 chr6 101316274 101316623 -87962931 - AluSx SINE Alu 0 350 1 3386 165 22 26 chr6 101316646 101317170 -87962384 + L1MB4 LINE L1 5157 5680 -491 7776 19 0 0 chr6 101317170 101318300 -87961254 - L1PA2 LINE L1 0 6155 5026 3386 165 22 26 chr6 101318300 101318542 -87961012 + L1MB4 LINE L1 5680 5921 -250 454 114 11 34 chr6 101318594 101318682 -87960872 - L1MB3 LINE L1 -214 5969 5884 957 182 39 5 chr6 101318720 101318923 -87960631 + L1MB4 LINE L1 5970 6179 -1 26 0 0 0 chr6 101318923 101318949 -87960605 + AT_rich Low_complexity Low_complexity 1 26 0 575 267 292 14 chr6 101319275 101319642 -87959912 - L2 LINE L2 -19 3294 2826 369 221 134 65 chr6 101320980 101321242 -87958312 - L1ME LINE L1 -621 5543 5264 422 289 109 18 chr6 101321438 101321877 -87957677 - L1ME LINE L1 -3457 2689 2211 33 25 0 0 chr6 101321895 101321935 -87957619 + AT_rich Low_complexity Low_complexity 1 40 0 5049 103 56 31 chr6 101322182 101323016 -87956538 + L1PB3 LINE L1 5299 6153 -1 266 274 62 9 chr6 101324861 101324974 -87954580 + L1ME4a LINE L1 5999 6117 -4 23 0 0 0 chr6 101325341 101325364 -87954190 + AT_rich Low_complexity Low_complexity 1 23 0 313 370 105 12 chr6 101325478 101325640 -87953914 - L2 LINE L2 0 3272 3096 1896 133 0 4 chr6 101326324 101326594 -87952960 + AluSx SINE Alu 1 269 -43 360 265 29 20 chr6 101328540 101328642 -87950912 - L2 LINE L2 -2 3270 3168 23 68 0 0 chr6 101329073 101329117 -87950437 + AT_rich Low_complexity Low_complexity 1 44 0 1768 118 98 9 chr6 101329152 101329499 -87950055 - L1MA8 LINE L1 0 6291 5914 479 221 10 0 chr6 101329504 101329608 -87949946 - L1ME1 LINE L1 -41 6125 6021 1591 290 86 66 chr6 101329642 101330886 -87948668 + HAL1 LINE L1 1 1329 -1178 3577 113 2 9 chr6 101330886 101331418 -87948136 + L1PA16 LINE L1 5630 6157 -9 1591 290 86 66 chr6 101331418 101332004 -87947550 + HAL1 LINE L1 1329 1902 -605 250 320 0 0 chr6 101332208 101332286 -87947268 + (TG)n Simple_repeat Simple_repeat 1 78 0 245 75 25 0 chr6 101332859 101332899 -87946655 + (TTTC)n Simple_repeat Simple_repeat 1 41 0 202 233 60 9 chr6 101333278 101333394 -87946160 + (TATAA)n Simple_repeat Simple_repeat 2 123 0 451 286 54 43 chr6 101333541 101333726 -87945828 + MIR3 SINE MIR 15 201 -7 1460 222 75 83 chr6 101333771 101334339 -87945215 - MLT1F1 LTR MaLR -4 563 1 220 311 58 29 chr6 101334405 101334508 -87945046 - L2 LINE L2 -1 3312 3207 1927 104 48 0 chr6 101334871 101335190 -87944364 - AluSx SINE Alu 0 332 1 186 320 39 39 chr6 101335396 101335474 -87944080 - L2 LINE L2 -173 3099 3022 225 0 0 0 chr6 101335667 101335692 -87943862 + (T)n Simple_repeat Simple_repeat 1 25 0 649 185 79 85 chr6 101335852 101336041 -87943513 + MLT1C LTR MaLR 5 192 -275 666 235 128 6 chr6 101336096 101336275 -87943279 + MER21B LTR ERV1 12 212 -651 2439 145 36 0 chr6 101336276 101336689 -87942865 + MSTA LTR MaLR 1 428 0 9142 155 9 60 chr6 101336689 101338429 -87941125 + MSTA-int LTR MaLR 1 1651 0 2559 153 21 12 chr6 101338429 101338853 -87940701 + MSTA LTR MaLR 1 428 0 2185 212 119 38 chr6 101338853 101339447 -87940107 + MER21B LTR ERV1 210 852 -11 678 240 77 11 chr6 101339456 101339639 -87939915 + MLT1C LTR MaLR 243 437 -30 312 270 176 25 chr6 101339659 101339818 -87939736 + MIR SINE MIR 74 256 -6 3685 73 2 2 chr6 101339821 101340303 -87939251 + L1PA6 LINE L1 5666 6147 -7 2234 97 0 7 chr6 101340709 101340997 -87938557 + AluSg SINE Alu 7 292 -18 30 0 0 0 chr6 101341020 101341050 -87938504 + AT_rich Low_complexity Low_complexity 1 30 0 1539 161 24 40 chr6 101341061 101341390 -87938164 + MER33 DNA MER1_type 1 324 0 226 274 32 0 chr6 101341937 101341999 -87937555 + CT-rich Low_complexity Low_complexity 3 66 0 185 140 70 0 chr6 101342332 101342389 -87937165 + CT-rich Low_complexity Low_complexity 1 61 0 214 273 136 62 chr6 101342402 101342644 -87936910 - L3b LINE CR1 -144 1439 1180 363 297 65 82 chr6 101343829 101344135 -87935419 - HAL1 LINE L1 -1411 1096 796 2487 64 0 0 chr6 101344798 101345094 -87934460 + AluY SINE Alu 1 296 -15 400 329 34 7 chr6 101345279 101345425 -87934129 + MIR SINE MIR 21 170 -92 25 51 0 0 chr6 101346078 101346117 -87933437 + AT_rich Low_complexity Low_complexity 1 39 0 1533 185 82 84 chr6 101346368 101346814 -87932740 - MER66A LTR ERV1 0 478 97 234 250 43 11 chr6 101348347 101348439 -87931115 + MLT1J2 LTR MaLR 67 161 -289 498 204 76 23 chr6 101348788 101348920 -87930634 + L1ME4a LINE L1 5982 6120 -1 189 283 33 0 chr6 101349046 101349106 -87930448 + L2 LINE L2 1848 1909 -1405 675 218 104 109 chr6 101349185 101349571 -87929983 - MLT1D LTR MaLR -121 384 1 229 181 28 83 chr6 101351538 101351610 -87927944 + L1ME4a LINE L1 5940 6007 -114 513 299 118 22 chr6 101352487 101352895 -87926659 + L1ME LINE L1 48 494 -5929 1554 208 136 81 chr6 101353088 101353833 -87925721 + L1ME LINE L1 814 1599 -4897 727 273 30 27 chr6 101353834 101354167 -87925387 + L1ME LINE L1 1717 2050 -4891 472 126 69 23 chr6 101354151 101354238 -87925316 + L1ME1 LINE L1 5422 5512 -730 * 1660 270 65 2 chr6 101354269 101354761 -87924793 + L1ME1 LINE L1 5626 6148 -18 1426 289 50 23 chr6 101355776 101356163 -87923391 + LTR16C LTR ERVL 36 438 -53 2138 128 3 0 chr6 101356163 101356467 -87923087 + AluSx SINE Alu 1 305 -7 1426 289 50 23 chr6 101356467 101356522 -87923032 + LTR16C LTR ERVL 438 490 -1 1976 121 43 0 chr6 101356978 101357259 -87922295 + AluSx SINE Alu 1 293 -19 2879 243 77 105 chr6 101357416 101357982 -87921572 - L1MEc LINE L1 -4785 1611 1031 625 161 98 9 chr6 101357982 101358094 -87921460 + AluSp/q SINE Alu 170 291 -22 2879 243 77 105 chr6 101358094 101358911 -87920643 - L1MEc LINE L1 -5365 1031 159 875 207 49 5 chr6 101358913 101359116 -87920438 + L1ME LINE L1 2349 2560 -4562 303 274 97 52 chr6 101359109 101359419 -87920135 - L1M4 LINE L1 -1199 4947 4624 * 191 267 100 0 chr6 101360165 101360225 -87919329 + L2 LINE L2 3154 3219 -53 355 253 40 0 chr6 101360511 101360610 -87918944 - L2 LINE L2 0 3313 3211 1372 205 0 0 chr6 101361388 101361612 -87917942 + MER58A DNA MER1_type 1 224 0 354 307 34 17 chr6 101362536 101362715 -87916839 + L1ME LINE L1 4998 5179 -1762 217 276 205 57 chr6 101362810 101363020 -87916534 + L2 LINE L2 58 298 -3016 277 266 86 36 chr6 101363284 101363423 -87916131 + L2 LINE L2 1277 1422 -1892 1257 145 68 10 chr6 101363459 101363666 -87915888 + MER20 DNA MER1_type 1 219 0 1207 272 95 43 chr6 101363851 101364413 -87915141 - L2 LINE L2 0 3313 2709 917 224 44 15 chr6 101364424 101364463 -87915091 + MER58A DNA MER1_type 1 37 -2383 2180 121 3 0 chr6 101364463 101364752 -87914802 - AluSx SINE Alu -22 290 1 917 224 44 15 chr6 101364752 101364917 -87914637 + MER58A DNA MER1_type 37 211 -13 1174 226 100 3 chr6 101365091 101365400 -87914154 + MER2 DNA MER2_type 7 345 0 877 319 51 21 chr6 101365401 101365885 -87913669 + L1ME LINE L1 6061 6554 -362 1577 263 49 34 chr6 101365948 101366503 -87913051 + L1MC4a LINE L1 5260 5733 -626 213 39 0 0 chr6 101366503 101366529 -87913025 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1577 263 49 34 chr6 101366529 101366625 -87912929 + L1MC4a LINE L1 5733 5826 -533 2606 115 33 3 chr6 101366966 101367330 -87912224 + THE1C LTR MaLR 1 375 0 1098 195 72 5 chr6 101367839 101368060 -87911494 - MER96B DNA MER1_type? -181 236 1 237 203 119 0 chr6 101368228 101368287 -87911267 - MER3 DNA MER1_type 0 209 144 987 242 96 52 chr6 101368424 101368883 -87910671 - L2 LINE L2 0 3313 2835 1850 155 6 22 chr6 101370362 101370482 -87909072 + AluJo SINE Alu 1 121 -191 261 0 0 0 chr6 101370482 101370511 -87909043 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1850 155 6 22 chr6 101370511 101370706 -87908848 + AluJo SINE Alu 121 311 -1 421 340 40 5 chr6 101371393 101371593 -87907961 - MIR SINE MIR -20 242 36 228 368 0 0 chr6 101371585 101371642 -87907912 + L2 LINE L2 3188 3244 -28 * 254 241 0 0 chr6 101371676 101371734 -87907820 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 1924 115 124 15 chr6 101372334 101372672 -87906882 - THE1C LTR MaLR 0 375 1 387 0 0 0 chr6 101372725 101372768 -87906786 + (CA)n Simple_repeat Simple_repeat 1 43 0 651 209 75 150 chr6 101373249 101373502 -87906052 + MLT1A1 LTR MaLR 123 356 -9 194 306 118 12 chr6 101373515 101373600 -87905954 + L2 LINE L2 3167 3260 -12 571 274 18 77 chr6 101374334 101374619 -87904935 - L1M4c LINE L1 -4485 2078 1811 496 205 29 99 chr6 101374790 101374961 -87904593 - L1M4c LINE L1 -4725 1659 1532 2467 146 31 49 chr6 101375443 101375896 -87903658 + MSTB2 LTR MaLR 13 457 0 351 200 29 0 chr6 101375991 101376061 -87903493 + MIR SINE MIR 82 153 -109 703 207 163 38 chr6 101376498 101376776 -87902778 - MLT1G1 LTR MaLR 0 595 194 233 323 21 10 chr6 101376833 101376929 -87902625 - MLT1G1 LTR MaLR -478 117 21 6819 38 0 0 chr6 101377150 101377945 -87901609 - L1PA3 LINE L1 0 6155 5361 1530 141 82 11 chr6 101377945 101378214 -87901340 + L1MB3 LINE L1 5893 6180 -3 262 274 16 0 chr6 101378851 101378913 -87900641 + MER94 DNA DNA 72 134 0 214 203 0 68 chr6 101378913 101378972 -87900582 + MIR SINE MIR 138 192 -70 252 321 13 13 chr6 101379067 101379277 -87900277 - L1P LINE L1 -1496 4650 4441 303 368 93 3 chr6 101379471 101379773 -87899781 + L2 LINE L2 2230 2558 -756 231 308 140 9 chr6 101379900 101380007 -87899547 + L2 LINE L2 2638 2758 -556 180 0 0 0 chr6 101380123 101380143 -87899411 + (CTATT)n Simple_repeat Simple_repeat 3 22 0 261 163 0 0 chr6 101381684 101381727 -87897827 - L2 LINE L2 -4 3309 3267 964 258 115 66 chr6 101381746 101382261 -87897293 - MLT1H LTR MaLR -2 547 8 2339 231 43 28 chr6 101382827 101383337 -87896217 + LTR40a LTR ERVL 2 519 0 2388 63 0 20 chr6 101383861 101384160 -87895394 - AluY SINE Alu -18 293 1 1234 191 173 61 chr6 101384489 101384909 -87894645 - MLT1H LTR MaLR 0 549 76 725 256 178 23 chr6 101384909 101385303 -87894251 + LTR16A1 LTR ERVL 3 457 0 1234 191 173 61 chr6 101385303 101385322 -87894232 - MLT1H LTR MaLR -473 76 61 369 200 130 20 chr6 101385326 101385426 -87894128 - MLT1H LTR MaLR -12 537 427 226 224 35 0 chr6 101385566 101385624 -87893930 + MLT1K LTR MaLR 25 84 -465 455 234 90 7 chr6 101385624 101385769 -87893785 + MLT1H LTR MaLR 384 540 -9 268 291 89 0 chr6 101386583 101386662 -87892892 - L2 LINE L2 -1 3271 3186 535 265 179 9 chr6 101387138 101387361 -87892193 + MIR SINE MIR 2 262 0 339 285 111 23 chr6 101388956 101389128 -87890426 + L2 LINE L2 3002 3188 -125 * 1254 261 62 47 chr6 101389116 101389676 -87889878 - L2 LINE L2 0 3313 2748 917 174 38 16 chr6 101389676 101389860 -87889694 - MER53 DNA DNA 0 189 2 1254 261 62 47 chr6 101389860 101389909 -87889645 - L2 LINE L2 -565 2748 2701 31 44 0 0 chr6 101389909 101389954 -87889600 + AT_rich Low_complexity Low_complexity 1 45 0 8128 28 5 0 chr6 101390048 101391641 -87887913 - L1PA3 LINE L1 0 6155 4559 12475 62 80 7 chr6 101391775 101393481 -87886073 - L1P LINE L1 -4311 1835 5 247 250 60 24 chr6 101393570 101393654 -87885900 + L1MC4 LINE L1 6660 6746 -1296 * 302 152 61 0 chr6 101393617 101393683 -87885871 - L1ME1 LINE L1 -1 6165 6096 27 96 0 0 chr6 101393745 101393828 -87885726 + AT_rich Low_complexity Low_complexity 1 83 0 306 233 96 20 chr6 101394152 101394325 -87885229 - L1MEc LINE L1 -1109 1467 1296 333 307 40 0 chr6 101395441 101395542 -87884012 - MIR3 SINE MIR -13 195 91 450 288 80 60 chr6 101395752 101396117 -87883437 + MLT1K LTR MaLR 215 586 -2 866 199 27 16 chr6 101397825 101398011 -87881543 + AluJo SINE Alu 120 307 -5 1027 293 56 20 chr6 101398287 101398642 -87880912 - LTR16B LTR ERVL 0 464 97 450 36 0 0 chr6 101399448 101399504 -87880050 + (TG)n Simple_repeat Simple_repeat 1 56 0 237 252 59 59 chr6 101399890 101400025 -87879529 + L1MDa LINE L1 1103 1237 -5145 426 279 52 37 chr6 101400082 101400115 -87879439 + L1MDa LINE L1 1295 1326 -5056 258 32 0 0 chr6 101400115 101400146 -87879408 + (GA)n Simple_repeat Simple_repeat 1 31 0 426 279 52 37 chr6 101400146 101400474 -87879080 + L1MDa LINE L1 1326 1731 -4651 520 287 82 40 chr6 101400616 101400919 -87878635 + L1MDa LINE L1 2036 2351 -4212 2222 117 0 16 chr6 101400923 101401230 -87878324 + AluSq SINE Alu 1 302 -11 715 100 77 31 chr6 101401639 101401769 -87877785 + L1MB3 LINE L1 5770 5905 -278 * 44623 42 3 1 chr6 101401768 101407914 -87871640 - L1PA4 LINE L1 -1 6154 1 475 211 9 9 chr6 101407914 101408023 -87871531 - L2 LINE L2 -600 2714 2606 221 149 43 0 chr6 101408046 101408093 -87871461 + GA-rich Low_complexity Low_complexity 2 50 0 318 312 104 23 chr6 101408166 101408387 -87871167 - L2 LINE L2 -493 2821 2583 385 273 80 69 chr6 101409271 101409634 -87869920 - MLT1J LTR MaLR 0 470 84 28 0 0 0 chr6 101410179 101410207 -87869347 + AT_rich Low_complexity Low_complexity 1 28 0 488 156 15 22 chr6 101411125 101411260 -87868294 + GA-rich Low_complexity Low_complexity 2 135 0 358 280 19 0 chr6 101411905 101412012 -87867542 + MER5B DNA MER1_type 3 111 -67 274 291 38 10 chr6 101412343 101412460 -87867094 - MIR SINE MIR -79 129 3 576 259 36 0 chr6 101412556 101412695 -87866859 + MLT1C LTR MaLR 259 402 -65 305 234 64 21 chr6 101413364 101413458 -87866096 + MER94 DNA DNA 8 105 -29 2049 208 33 11 chr6 101413701 101414157 -87865397 + MLT1C LTR MaLR 1 466 -1 329 359 47 49 chr6 101414237 101414414 -87865140 + L2 LINE L2 2817 2993 -279 1838 141 33 39 chr6 101414414 101414719 -87864835 - AluJb SINE Alu -7 305 3 329 359 47 49 chr6 101414719 101414970 -87864584 + L2 LINE L2 2993 3244 -28 2067 113 63 33 chr6 101414972 101415336 -87864218 - THE1C LTR MaLR 0 375 1 277 209 38 120 chr6 101417724 101417882 -87861672 + MER5B DNA MER1_type 30 174 -4 211 308 94 34 chr6 101418045 101418311 -87861243 - L2 LINE L2 -584 2730 2449 208 336 77 10 chr6 101418508 101418612 -87860942 + L2 LINE L2 3150 3260 -12 322 244 17 40 chr6 101421859 101421967 -87857587 + MIR3 SINE MIR 101 205 -3 241 274 16 0 chr6 101422143 101422205 -87857349 - L2 LINE L2 -1 3271 3209 564 245 152 62 chr6 101422237 101422560 -87856994 - MLT1J2 LTR MaLR 0 450 99 1037 171 15 39 chr6 101422616 101422880 -87856674 - AluJo SINE Alu 0 343 85 195 325 0 0 chr6 101423088 101423165 -87856389 - MIR SINE MIR -133 129 53 237 277 75 11 chr6 101423214 101423308 -87856246 - L2 LINE L2 -261 3011 2912 219 247 172 0 chr6 101424412 101424505 -87855049 + MIR SINE MIR 46 154 -108 392 305 74 32 chr6 101424732 101424922 -87854632 + MIR SINE MIR 45 242 -20 802 146 0 21 chr6 101425771 101425915 -87853639 + L1MB7 LINE L1 6039 6179 -5 1121 186 39 0 chr6 101426099 101426303 -87853251 + MER20 DNA MER1_type 1 212 -7 344 287 52 18 chr6 101426762 101426945 -87852609 + MIR SINE MIR 3 192 -62 500 284 76 5 chr6 101427504 101427701 -87851853 - MIR SINE MIR -1 261 51 249 298 93 80 chr6 101428568 101428857 -87850697 + L2 LINE L2 2948 3240 -32 206 374 0 0 chr6 101428874 101428957 -87850597 + G-rich Low_complexity Low_complexity 4 86 0 1426 231 72 31 chr6 101429009 101429455 -87850099 - MLT1C LTR MaLR -3 464 1 786 132 11 22 chr6 101429853 101430035 -87849519 + CT-rich Low_complexity Low_complexity 1 180 0 448 244 0 44 chr6 101431394 101431529 -87848025 + MER94 DNA DNA 1 129 -5 258 265 15 0 chr6 101432943 101433018 -87846536 + MIR SINE MIR 77 141 -67 272 340 0 10 chr6 101434976 101435079 -87844475 - MIR SINE MIR 0 262 161 362 293 71 75 chr6 101435103 101435397 -87844157 - MLT1K LTR MaLR -38 550 258 342 0 0 0 chr6 101437454 101437492 -87842062 + (GGAGA)n Simple_repeat Simple_repeat 5 42 0 321 261 14 0 chr6 101437715 101437784 -87841770 + Zaphod DNA AcHobo 2 71 -3960 844 197 38 6 chr6 101440785 101440968 -87838586 - MIR SINE MIR -3 259 71 2350 146 39 10 chr6 101441566 101441976 -87837578 + MSTA LTR MaLR 4 425 -3 313 272 136 26 chr6 101444575 101444834 -87834720 + L2 LINE L2 2735 3011 -302 1888 228 94 14 chr6 101444947 101445385 -87834169 + MLT2B1 LTR ERVL 1 473 -47 370 108 0 3 chr6 101445430 101445492 -87834062 + MLT2C2 LTR ERVL 416 464 0 336 196 71 169 chr6 101445492 101445597 -87833957 + L2 LINE L2 3147 3228 -85 1689 170 60 0 chr6 101445597 101445880 -87833674 - AluSg SINE Alu -10 300 1 336 196 71 169 chr6 101445880 101445958 -87833596 + L2 LINE L2 3228 3312 -1 281 188 100 0 chr6 101446260 101446340 -87833214 - L2 LINE L2 -2 3311 3224 292 180 40 60 chr6 101446354 101446454 -87833100 - L2 LINE L2 -52 3261 3164 336 322 16 27 chr6 101446606 101446789 -87832765 + L2 LINE L2 2872 3052 -220 276 255 11 11 chr6 101446985 101447079 -87832475 + (TGAA)n Simple_repeat Simple_repeat 1 94 0 375 78 0 0 chr6 101447093 101447144 -87832410 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 713 279 59 4 chr6 101447554 101447791 -87831763 + MIR SINE MIR 7 256 -6 2702 108 3 120 chr6 101448387 101448767 -87830787 - L1MB3 LINE L1 0 6183 5760 185 94 31 0 chr6 101448767 101448799 -87830755 + CT-rich Low_complexity Low_complexity 2 34 0 1997 161 0 0 chr6 101448777 101449081 -87830473 - AluJb SINE Alu -8 304 1 2702 108 3 120 chr6 101449081 101449255 -87830299 - L1MB3 LINE L1 -705 5478 5685 1878 164 73 9 chr6 101449337 101449678 -87829876 + MLT1A1 LTR MaLR 3 365 0 2050 135 146 13 chr6 101449708 101450086 -87829468 - MSTA LTR MaLR 0 428 1 8903 176 28 33 chr6 101450086 101451341 -87828213 - MSTA-int LTR MaLR 0 1651 406 423 243 122 0 chr6 101451341 101451448 -87828106 - FLAM_C SINE Alu -13 120 1 8903 176 28 33 chr6 101451448 101451852 -87827702 - MSTA-int LTR MaLR -1245 406 1 2074 137 143 13 chr6 101451852 101452231 -87827323 - MSTA LTR MaLR 0 428 1 454 217 102 1 chr6 101452284 101452429 -87827125 - MIR SINE MIR -62 146 16 249 307 140 33 chr6 101454157 101454307 -87825247 + MER91A DNA MER1_type 14 179 -17 220 318 0 0 chr6 101456014 101456080 -87823474 + L3 LINE CR1 324 389 -1188 522 254 53 48 chr6 101456163 101456372 -87823182 - MLT1J LTR MaLR -65 446 237 1679 172 0 72 chr6 101456410 101456729 -87822825 - AluJo SINE Alu -16 296 1 2086 108 0 14 chr6 101456738 101457015 -87822539 - AluSx SINE Alu -15 297 25 3111 232 73 41 chr6 101457675 101458962 -87820592 - L1MD2 LINE L1 -14 6345 5022 904 142 4 5 chr6 101459067 101460208 -87819346 + BSR/Beta Satellite Satellite 1 1140 -36 1146 119 0 0 chr6 101460311 101460570 -87818984 + (GAATG)n Satellite Satellite 1 259 0 974 143 2 0 chr6 101460583 101461062 -87818492 + (GAATG)n Satellite Satellite 1 480 0 1002 117 0 0 chr6 101461075 101461254 -87818300 + (GAATG)n Satellite Satellite 2 180 0 360 111 0 0 chr6 101461268 101461331 -87818223 + (GAATG)n Satellite Satellite 5 67 0 696 80 0 0 chr6 101461431 101461531 -87818023 + (GAATG)n Satellite Satellite 3 102 0 977 123 6 0 chr6 101461548 101461727 -87817827 + (GAATG)n Satellite Satellite 1 180 0 198 118 0 0 chr6 101461742 101461776 -87817778 + (GAATG)n Satellite Satellite 2 35 0 1155 107 3 3 chr6 101461796 101462270 -87817284 + (GAATG)n Satellite Satellite 1 654 0 784 126 0 53 chr6 101462291 101462481 -87817073 + (GAATG)n Satellite Satellite 1 180 0 462 155 0 0 chr6 101462497 101462594 -87816960 + (GAATG)n Satellite Satellite 3 99 0 890 167 8 0 chr6 101462606 101462858 -87816696 + (GAATG)n Satellite Satellite 1 254 0 1023 130 6 7 chr6 101462963 101465338 -87814216 + BSR/Beta Satellite Satellite 1 2372 -13 2566 217 83 28 chr6 101465445 101466241 -87813313 - L1MDb LINE L1 -1120 5420 4581 * 4808 224 52 63 chr6 101466235 101466716 -87812838 - L1MDb LINE L1 -2347 4193 3708 2009 153 0 3 chr6 101466716 101467017 -87812537 - AluSx SINE Alu -12 300 1 4808 224 52 63 chr6 101467017 101468040 -87811514 - L1MDb LINE L1 -2832 3708 2676 1856 154 17 0 chr6 101468040 101468333 -87811221 - AluSq SINE Alu -15 298 1 4808 224 52 63 chr6 101468333 101469704 -87809850 - L1MDb LINE L1 -3864 2676 1357 1781 177 3 3 chr6 101469704 101469998 -87809556 + AluJo SINE Alu 1 294 -18 4808 224 52 63 chr6 101469998 101470444 -87809110 - L1MDb LINE L1 -5183 1357 908 955 278 17 62 chr6 101470871 101471288 -87808266 - L1MDb LINE L1 -6127 413 16 632 223 33 60 chr6 101474584 101474799 -87804755 - MER3 DNA MER1_type 0 209 1 919 259 157 26 chr6 101475738 101476197 -87803357 + LTR33 LTR ERVL 1 519 -2 623 275 47 46 chr6 101476410 101476690 -87802864 - MLT1F1 LTR MaLR -283 247 1 385 231 67 22 chr6 101476975 101477109 -87802445 - MIR3 SINE MIR -28 180 41 362 300 36 40 chr6 101478163 101478416 -87801138 + MIR SINE MIR 1 252 -10 1864 124 12 0 chr6 101478420 101478670 -87800884 + AluSx SINE Alu 1 253 -59 2241 131 19 19 chr6 101479688 101480062 -87799492 + THE1C LTR MaLR 1 374 -1 294 29 0 0 chr6 101480062 101480097 -87799457 + (TG)n Simple_repeat Simple_repeat 2 36 0 805 214 7 7 chr6 101480148 101480302 -87799252 + FRAM SINE Alu 4 157 -9 341 293 279 18 chr6 101480595 101481029 -87798525 - HAL1 LINE L1 -21 2486 1940 325 266 156 26 chr6 101485209 101485363 -87794191 + MER91A DNA MER1_type 20 193 -3 256 300 45 18 chr6 101485924 101486034 -87793520 + MIR SINE MIR 70 182 -80 24 0 0 0 chr6 101487380 101487404 -87792150 + AT_rich Low_complexity Low_complexity 1 24 0 292 280 80 0 chr6 101487884 101487984 -87791570 + MIR3 SINE MIR 77 184 -24 278 121 0 52 chr6 101488173 101488231 -87791323 + MLT1K LTR MaLR 449 503 -85 2723 154 2 18 chr6 101488338 101488773 -87790781 + MSTC LTR MaLR 1 428 0 5813 65 13 11 chr6 101490114 101490878 -87788676 + MER4E LTR ERV1 1 766 0 2007 259 138 22 chr6 101491753 101492940 -87786614 - L2 LINE L2 -1 3312 1984 532 295 75 15 chr6 101493106 101493374 -87786180 - L2 LINE L2 -1317 1997 1714 3950 11 0 0 chr6 101495120 101495558 -87783996 - L1PA2 LINE L1 -7 6148 5711 282 191 16 16 chr6 101496461 101496524 -87783030 + MIR SINE MIR 117 179 -83 203 156 0 44 chr6 101498425 101498470 -87781084 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 273 228 244 16 chr6 101502785 101502912 -87776642 + MIR SINE MIR 97 252 -10 3784 179 54 59 chr6 101502945 101504079 -87775475 - L1MB2 LINE L1 -2 6169 5045 2295 69 10 3 chr6 101504079 101504367 -87775187 + AluY SINE Alu 1 290 -21 3784 179 54 59 chr6 101504367 101504940 -87774614 - L1MB2 LINE L1 -1126 5045 4471 23 33 0 0 chr6 101505401 101505431 -87774123 + AT_rich Low_complexity Low_complexity 1 30 0 1583 197 25 0 chr6 101505904 101506229 -87773325 - L1MD3 LINE L1 -778 7217 6885 1856 165 3 10 chr6 101506253 101506556 -87772998 - AluJb SINE Alu -11 301 1 505 187 47 20 chr6 101507477 101507627 -87771927 + L1ME4a LINE L1 5955 6108 -13 1184 248 70 7 chr6 101507771 101508069 -87771485 + MER119 DNA MER1_type 1 317 -266 594 182 159 0 chr6 101508086 101508218 -87771336 + MER119 DNA MER1_type 431 583 0 2617 139 41 52 chr6 101508754 101509270 -87770284 + LTR54 LTR ERV1 1 510 0 906 282 167 9 chr6 101509474 101509893 -87769661 + L2 LINE L2 1820 2304 -1010 363 300 190 21 chr6 101509890 101510217 -87769337 - L2 LINE L2 -13 3300 2919 * 786 340 62 11 chr6 101510451 101510824 -87768730 + L2 LINE L2 2346 2737 -577 4200 201 45 46 chr6 101510824 101512820 -87766734 + L1ME1 LINE L1 4151 6144 -22 705 236 62 6 chr6 101513056 101513234 -87766320 - MIR SINE MIR -10 252 65 291 350 8 17 chr6 101513303 101513420 -87766134 - MIR SINE MIR -127 135 20 261 351 26 39 chr6 101519019 101519052 -87760502 - MIR3 SINE MIR -27 181 149 1849 171 0 3 chr6 101519052 101519350 -87760204 - AluJb SINE Alu -15 297 1 261 351 26 39 chr6 101519350 101519470 -87760084 - MIR3 SINE MIR -59 149 30 408 82 0 0 chr6 101519613 101519674 -87759880 + (CA)n Simple_repeat Simple_repeat 2 62 0 285 293 132 0 chr6 101520250 101520356 -87759198 + L2 LINE L2 3185 3304 -9 23 33 0 0 chr6 101521845 101521875 -87757679 + AT_rich Low_complexity Low_complexity 1 30 0 248 274 42 11 chr6 101522275 101522370 -87757184 + (TATATG)n Simple_repeat Simple_repeat 1 98 0 185 191 0 24 chr6 101523081 101523123 -87756431 - L2 LINE L2 -2 3270 3230 180 329 47 65 chr6 101524022 101524192 -87755362 + MIR SINE MIR 48 214 -48 218 345 62 9 chr6 101524916 101525029 -87754525 - MIR SINE MIR -30 232 114 271 252 43 78 chr6 101526721 101526836 -87752718 + L2 LINE L2 3203 3313 0 335 256 171 16 chr6 101526883 101527012 -87752542 - MIR SINE MIR -35 227 79 * 651 288 37 90 chr6 101527006 101527305 -87752249 + L2 LINE L2 2990 3272 0 1973 142 13 3 chr6 101527362 101527665 -87751889 + AluJo SINE Alu 7 312 0 199 301 0 75 chr6 101527718 101527811 -87751743 - L2 LINE L2 -1010 2304 2219 2329 100 0 0 chr6 101528147 101528448 -87751106 + AluSg SINE Alu 1 301 -9 198 0 0 0 chr6 101529117 101529139 -87750415 + (GA)n Simple_repeat Simple_repeat 1 22 0 526 317 120 2 chr6 101529697 101529918 -87749636 + MIR SINE MIR 15 259 -3 1398 134 15 177 chr6 101530078 101530474 -87749080 - MER47A DNA MER2_type 0 366 35 23378 32 3 32 chr6 101530475 101534115 -87745439 + L1PA5 LINE L1 2523 6146 -8 255 182 23 0 chr6 101534147 101534191 -87745363 - MER47A DNA MER2_type -319 47 3 25 0 0 0 chr6 101534356 101534381 -87745173 + AT_rich Low_complexity Low_complexity 1 25 0 1675 153 77 3 chr6 101534533 101534820 -87744734 + AluJo SINE Alu 5 312 0 228 135 0 0 chr6 101534822 101534859 -87744695 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 855 48 0 0 chr6 101535456 101535585 -87743969 + L1PA4 LINE L1 6037 6165 0 183 416 48 16 chr6 101535922 101536047 -87743507 + L2 LINE L2 3108 3236 -36 1104 144 93 10 chr6 101536049 101536243 -87743311 + MER6B DNA MER2_type 1 210 0 2441 45 3 0 chr6 101536505 101536796 -87742758 + AluY SINE Alu 1 292 -19 310 181 236 55 chr6 101538450 101538577 -87740977 + MIR SINE MIR 113 262 0 24 53 0 0 chr6 101538758 101538796 -87740758 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr6 101539252 101539295 -87740259 + AT_rich Low_complexity Low_complexity 1 43 0 351 216 103 21 chr6 101540868 101540965 -87738589 - L2 LINE L2 -10 3303 3199 327 282 46 8 chr6 101541852 101541983 -87737571 - MER112 DNA MER1_type 0 260 125 1237 159 0 15 chr6 101543896 101544091 -87735463 + AluJo SINE Alu 1 192 -120 9615 147 16 5 chr6 101544091 101545631 -87733923 + L1MB7 LINE L1 5 1560 -5303 2247 146 39 36 chr6 101545637 101546183 -87733371 + MLT2A2 LTR ERVL 1 554 0 8475 151 37 12 chr6 101546183 101549246 -87730308 + L1MB7 LINE L1 1562 4705 -2157 3437 58 35 0 chr6 101549247 101549681 -87729873 + LTR2 LTR ERV1 1 449 0 45017 172 7 20 chr6 101549681 101557590 -87721964 + Harlequin LTR ERV1 1 7811 -2 4150 0 0 0 chr6 101557590 101558039 -87721515 + LTR2 LTR ERV1 1 449 0 5475 204 5 9 chr6 101558047 101559283 -87720271 + L1 LINE L1 4711 5941 -921 272 131 16 49 chr6 101559266 101559327 -87720227 - L1MC4 LINE L1 -1326 6716 6658 * 354 195 0 0 chr6 101559339 101559416 -87720138 + (TA)n Simple_repeat Simple_repeat 2 78 0 2690 88 3 3 chr6 101559432 101559797 -87719757 + L1PB1 LINE L1 5782 6146 -5 1759 155 31 34 chr6 101561354 101561645 -87717909 + AluJb SINE Alu 1 290 -22 2301 102 0 3 chr6 101561903 101562207 -87717347 + AluSx SINE Alu 1 303 -9 472 254 0 25 chr6 101562378 101562496 -87717058 + L1MB7 LINE L1 4757 4871 -1991 851 144 0 27 chr6 101562498 101562644 -87716910 + FLAM_C SINE Alu 1 142 -1 1128 212 61 96 chr6 101562646 101564127 -87715427 + L1MB7 LINE L1 4877 6498 -402 226 106 21 21 chr6 101564127 101564174 -87715380 + MADE1 DNA Mariner 32 78 -2 1128 212 61 96 chr6 101564174 101564555 -87714999 + L1MB7 LINE L1 6498 6891 -9 1508 161 33 66 chr6 101564561 101564865 -87714689 - AluJb SINE Alu -18 294 1 1609 134 51 40 chr6 101565068 101565343 -87714211 - AluJb SINE Alu -6 306 29 22 88 0 0 chr6 101565563 101565620 -87713934 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr6 101565690 101565711 -87713843 + AT_rich Low_complexity Low_complexity 1 21 0 842 231 6 0 chr6 101565726 101565882 -87713672 + FAM SINE Alu 1 157 -18 381 169 0 15 chr6 101565967 101566032 -87713522 + Tigger2 DNA MER2_type 6 69 -2649 * 1181 94 17 11 chr6 101566019 101566200 -87713354 + Tigger2 DNA MER2_type 2270 2451 -267 338 292 58 8 chr6 101567294 101567414 -87712140 + HsTC2 DNA Tc2 1 126 -1772 2414 84 0 0 chr6 101567548 101567847 -87711707 + AluSp SINE Alu 1 299 -14 1169 97 0 23 chr6 101569668 101569843 -87709711 - L1PA11 LINE L1 -1 6173 6003 994 293 81 11 chr6 101569850 101570505 -87709049 + L1MC4a LINE L1 2755 3455 -2691 262 270 56 0 chr6 101570584 101570673 -87708881 + L1MC4a LINE L1 3567 3660 -2486 1609 159 37 26 chr6 101570698 101570826 -87708728 + L1MC1 LINE L1 5189 5314 -1019 1790 174 7 10 chr6 101570826 101571131 -87708423 + AluJo SINE Alu 6 309 -3 1609 159 37 26 chr6 101571131 101572052 -87707502 + L1MC1 LINE L1 5314 6331 -2 2107 184 65 18 chr6 101572053 101572558 -87706996 + L1MC2 LINE L1 5816 6344 0 221 231 0 15 chr6 101572609 101572674 -87706880 + GA-rich Low_complexity Low_complexity 2 65 0 7245 215 80 95 chr6 101572703 101575816 -87703738 + L1MC4a LINE L1 3794 6952 -856 2332 142 54 5 chr6 101575816 101576225 -87703329 + Tigger2a DNA MER2_type 5 433 -1 7245 215 80 95 chr6 101576225 101576248 -87703306 + L1MC4a LINE L1 6952 6974 -834 893 150 0 0 chr6 101576248 101576375 -87703179 + FLAM_C SINE Alu 1 127 -16 7245 215 80 95 chr6 101576375 101576406 -87703148 + L1MC4a LINE L1 6974 7004 -804 2172 106 20 3 chr6 101576406 101576698 -87702856 + AluSx SINE Alu 1 297 -15 7245 215 80 95 chr6 101576698 101577504 -87702050 + L1MC4a LINE L1 7004 7808 0 1432 203 27 43 chr6 101577513 101577813 -87701741 + AluJo SINE Alu 1 295 -17 237 267 17 0 chr6 101577893 101577953 -87701601 + L1ME3A LINE L1 5589 5649 -513 314 263 61 0 chr6 101578035 101578134 -87701420 + L1ME3A LINE L1 5798 5902 -260 2241 130 130 5 chr6 101578139 101578515 -87701039 + MSTA LTR MaLR 6 428 0 457 301 29 44 chr6 101578646 101578852 -87700702 + L1ME3A LINE L1 5963 6165 -5 21 57 0 0 chr6 101578934 101578969 -87700585 + AT_rich Low_complexity Low_complexity 1 35 0 449 268 43 14 chr6 101579192 101579330 -87700224 + L1MEc LINE L1 121 262 -6134 1288 216 84 62 chr6 101579383 101579884 -87699670 + L1ME1 LINE L1 5646 6157 -9 23 33 0 0 chr6 101579913 101579943 -87699611 + AT_rich Low_complexity Low_complexity 1 30 0 9260 148 73 72 chr6 101579998 101581911 -87697643 + L1MA7 LINE L1 2903 5027 -1264 823 155 34 92 chr6 101581911 101582117 -87697437 + MSTD LTR MaLR 203 396 0 9260 148 73 72 chr6 101582117 101583385 -87696169 + L1MA7 LINE L1 5027 6291 0 297 0 0 0 chr6 101583690 101583723 -87695831 + (CA)n Simple_repeat Simple_repeat 2 34 0 2173 89 7 0 chr6 101584379 101584660 -87694894 + AluY SINE Alu 22 304 -7 1614 168 17 37 chr6 101584671 101584968 -87694586 + AluJb SINE Alu 1 291 -21 691 63 0 74 chr6 101584968 101585157 -87694397 + (TA)n Simple_repeat Simple_repeat 1 175 0 663 59 0 76 chr6 101585174 101585414 -87694140 + (TA)n Simple_repeat Simple_repeat 1 221 0 2324 185 6 23 chr6 101586415 101586498 -87693056 + L1MB4 LINE L1 5685 5768 -412 1515 183 73 0 chr6 101586498 101586771 -87692783 + AluJo SINE Alu 8 300 -12 2324 185 6 23 chr6 101586771 101587158 -87692396 + L1MB4 LINE L1 5768 6147 -33 243 218 0 0 chr6 101587179 101587234 -87692320 + L1MB4 LINE L1 6126 6180 0 387 327 55 15 chr6 101587768 101587952 -87691602 + MIR SINE MIR 9 200 -62 397 107 0 27 chr6 101588171 101588246 -87691308 + (GAA)n Simple_repeat Simple_repeat 1 73 0 258 236 0 34 chr6 101588500 101588589 -87690965 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 331 343 93 6 chr6 101588744 101588916 -87690638 - MIR SINE MIR -71 191 5 5619 165 20 4 chr6 101588942 101590794 -87688760 + L1PA16 LINE L1 4282 6164 -2 2502 68 0 3 chr6 101591066 101591375 -87688179 + AluY SINE Alu 1 308 -3 217 313 0 16 chr6 101592291 101592355 -87687199 + L2 LINE L2 3204 3266 -6 24 0 0 0 chr6 101595835 101595859 -87683695 + AT_rich Low_complexity Low_complexity 1 24 0 2112 107 10 3 chr6 101596115 101596405 -87683149 + AluSg SINE Alu 1 292 -18 1006 172 91 29 chr6 101596595 101596900 -87682654 - MER33 DNA MER1_type 0 363 2 481 168 243 0 chr6 101597201 101597308 -87682246 + FLAM_A SINE Alu 1 133 0 228 194 0 81 chr6 101598872 101598934 -87680620 - L2 LINE L2 -1 3312 3256 1581 209 0 20 chr6 101599404 101599696 -87679858 - AluJo SINE Alu -23 289 4 1488 212 87 20 chr6 101600146 101600490 -87679064 + MLT1A2 LTR MaLR 1 367 -7 22 0 0 0 chr6 101600817 101600839 -87678715 + AT_rich Low_complexity Low_complexity 1 22 0 248 277 88 75 chr6 101601048 101601207 -87678347 + MIR SINE MIR 3 163 -99 1051 153 23 0 chr6 101601332 101601509 -87678045 - U17 snRNA snRNA -3 204 24 2805 0 0 0 chr6 101601530 101601829 -87677725 - AluYa5 SINE Alu -12 299 1 11732 32 2 0 chr6 101601894 101604064 -87675490 + L1PA4 LINE L1 3981 6153 -2 1654 223 28 23 chr6 101604621 101605015 -87674539 + L1MDa LINE L1 128 523 -6017 2089 144 20 0 chr6 101605198 101605503 -87674051 + AluSx SINE Alu 1 311 -1 28 48 0 0 chr6 101605740 101605782 -87673772 + AT_rich Low_complexity Low_complexity 1 42 0 296 389 64 27 chr6 101608068 101608366 -87671188 + L2 LINE L2 2004 2312 -1002 343 347 121 19 chr6 101608727 101609142 -87670412 + L2 LINE L2 2808 3264 -8 1244 267 14 38 chr6 101609409 101609832 -87669722 + L1MCb LINE L1 3 415 -5630 5916 134 42 40 chr6 101609832 101610352 -87669202 + Tigger3b DNA MER2_type 2 519 -2509 1857 108 176 6 chr6 101610352 101610675 -87668879 + MER83B LTR ERV1 1 378 0 5916 134 42 40 chr6 101610675 101610812 -87668742 + Tigger3b DNA MER2_type 519 654 -2374 2316 97 0 0 chr6 101610812 101611112 -87668442 - AluSx SINE Alu -12 300 1 5916 134 42 40 chr6 101611112 101611583 -87667971 + Tigger3b DNA MER2_type 654 1134 -97 1108 151 101 0 chr6 101611584 101611763 -87667791 - MER1B DNA MER1_type 0 339 143 320 244 103 0 chr6 101611772 101611850 -87667704 + LTR10A LTR ERV1 13 98 -511 1581 159 71 37 chr6 101611870 101612196 -87667358 + LTR10A LTR ERV1 212 548 -61 850 257 62 0 chr6 101612205 101612477 -87667077 + LTR10A-int LTR ERV1 1 289 -6360 272 247 152 45 chr6 101612636 101612814 -87666740 + LTR10A-int LTR ERV1 502 698 -5951 253 261 65 22 chr6 101612821 101612913 -87666641 + LTR10A-int LTR ERV1 975 1070 -5579 5552 98 12 28 chr6 101612921 101613989 -87665565 + HERV17 LTR ERV1 704 1720 -5176 317 262 167 0 chr6 101613991 101614075 -87665479 - LTR8 LTR ERV1 -438 253 156 11660 153 14 20 chr6 101614078 101617220 -87662334 + Harlequin LTR ERV1 1813 6645 -4 229 276 126 0 chr6 101617223 101617310 -87662244 + LTR10A LTR ERV1 1 98 -511 1651 156 67 37 chr6 101617329 101617657 -87661897 + LTR10A LTR ERV1 211 548 -61 840 114 114 0 chr6 101617670 101617801 -87661753 - MER1B DNA MER1_type -150 147 2 242 136 23 0 chr6 101617806 101617850 -87661704 + Tigger3b DNA MER2_type 1143 1187 -44 2584 201 30 72 chr6 101617875 101618668 -87660886 + L1MCb LINE L1 420 1179 -4866 1017 166 52 9 chr6 101618672 101618819 -87660735 + L1MB3 LINE L1 5117 5256 -927 2563 117 47 35 chr6 101618819 101619248 -87660306 - Tigger2a DNA MER2_type 0 434 1 1017 166 52 9 chr6 101619248 101620072 -87659482 + L1MB3 LINE L1 5256 6183 0 4394 224 105 32 chr6 101620079 101620164 -87659390 + L1MCb LINE L1 1172 1249 -5315 1573 171 21 21 chr6 101620164 101620445 -87659109 + AluJb SINE Alu 1 281 -31 4394 224 105 32 chr6 101620445 101621755 -87657799 + L1MCb LINE L1 1249 2462 -4102 1965 174 19 11 chr6 101621755 101622118 -87657436 + MER47A DNA MER2_type 1 366 0 4394 224 105 32 chr6 101622118 101623486 -87656068 + L1MCb LINE L1 2462 4140 -2424 1677 221 70 99 chr6 101623595 101624263 -87655291 + MLT1A2-int LTR MaLR 433 1463 -272 282 122 24 0 chr6 101624263 101624304 -87655250 - 5S rRNA rRNA -79 42 1 1677 221 70 99 chr6 101624304 101624564 -87654990 + MLT1A2-int LTR MaLR 1463 1729 -6 1418 241 27 32 chr6 101624569 101624939 -87654615 + MLT1A2 LTR MaLR 7 374 0 273 236 0 14 chr6 101624939 101625011 -87654543 + L1MCb LINE L1 4136 4206 -2358 2786 188 6 6 chr6 101625014 101625536 -87654018 + L1MC3 LINE L1 7107 7628 -157 1393 119 5 10 chr6 101625536 101625737 -87653817 + AluSg/x SINE Alu 87 286 -26 817 150 75 40 chr6 101625749 101625922 -87653632 + L1MC2 LINE L1 6156 6334 -10 270 0 0 0 chr6 101625927 101625957 -87653597 + (CA)n Simple_repeat Simple_repeat 2 31 0 30 69 0 0 chr6 101626017 101626075 -87653479 + AT_rich Low_complexity Low_complexity 1 58 0 477 0 0 0 chr6 101626813 101626866 -87652688 + (TA)n Simple_repeat Simple_repeat 1 53 0 1846 163 16 7 chr6 101627326 101627632 -87651922 + AluJb SINE Alu 4 312 0 2364 91 0 20 chr6 101627653 101627995 -87651559 + L1PA8A LINE L1 5797 6131 0 316 51 0 0 chr6 101628001 101628040 -87651514 - L1PA16 LINE L1 -682 5484 5446 3997 139 26 1 chr6 101628040 101628683 -87650871 + L1PA16 LINE L1 5494 6157 -9 26 30 0 0 chr6 101628683 101628716 -87650838 + AT_rich Low_complexity Low_complexity 1 33 0 192 365 0 0 chr6 101630301 101630364 -87649190 + MIR SINE MIR 52 114 -148 3034 150 107 0 chr6 101630392 101630518 -87649036 - L1MB3 LINE L1 0 6183 6072 198 0 0 0 chr6 101630518 101630540 -87649014 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 3034 150 107 0 chr6 101630540 101630981 -87648573 - L1MB3 LINE L1 -111 6072 5555 227 286 71 20 chr6 101630983 101631081 -87648473 + MIR SINE MIR 122 224 -38 2134 129 0 6 chr6 101631336 101631647 -87647907 - AluSc SINE Alu 0 309 1 1448 210 65 3 chr6 101632092 101632444 -87647110 + L1MC4a LINE L1 7073 7446 -362 602 178 42 0 chr6 101632454 101632572 -87646982 - MER68 LTR ERV1 -27 535 413 723 125 76 7 chr6 101632586 101632730 -87646824 + Charlie5 DNA MER1_type 2432 2585 -27 493 235 113 39 chr6 101632735 101632939 -87646615 - L1MC5 LINE L1 -768 7193 6975 568 245 13 13 chr6 101632961 101633116 -87646438 + LTR41 LTR ERVL 1 155 -618 1545 327 32 25 chr6 101633367 101633533 -87646021 + ERVL LTR ERVL 1773 1936 -3828 1909 165 24 15 chr6 101633533 101633867 -87645687 - MER1B DNA MER1_type 0 337 1 1545 327 32 25 chr6 101633867 101634333 -87645221 + ERVL LTR ERVL 1936 2409 -3355 572 246 21 13 chr6 101634478 101634635 -87644919 - MLT2E LTR ERVL 0 663 471 876 280 50 25 chr6 101634645 101634924 -87644630 - MLT2F LTR ERVL -91 572 287 510 286 49 40 chr6 101634958 101635108 -87644446 - MLT2E LTR ERVL -476 152 1 640 282 143 45 chr6 101635129 101635827 -87643727 + L2 LINE L2 2537 3313 0 478 276 103 38 chr6 101635846 101636292 -87643262 + L1MEc LINE L1 1261 1735 -4661 209 326 0 0 chr6 101636559 101636645 -87642909 + A-rich Low_complexity Low_complexity 1 86 0 331 218 90 39 chr6 101636664 101636820 -87642734 + L1MEc LINE L1 2206 2369 -3846 1955 213 25 34 chr6 101636823 101637293 -87642261 - MLT1C LTR MaLR -1 466 1 309 330 124 19 chr6 101637383 101637592 -87641962 - L2 LINE L2 -654 2660 2430 315 294 108 20 chr6 101638062 101638164 -87641390 + L2 LINE L2 3162 3272 0 1382 60 16 0 chr6 101639801 101639983 -87639571 + L1MA1 LINE L1 6114 6298 -4 29 60 0 0 chr6 101640098 101640148 -87639406 + AT_rich Low_complexity Low_complexity 1 50 0 1771 149 35 7 chr6 101640318 101640606 -87638948 + AluJb SINE Alu 1 296 -16 32 43 0 0 chr6 101640762 101640808 -87638746 + AT_rich Low_complexity Low_complexity 1 46 0 3479 97 16 10 chr6 101641651 101642159 -87637395 + MER9 LTR ERVK 1 511 0 2183 124 0 0 chr6 101642768 101643075 -87636479 + AluSg1 SINE Alu 1 307 -2 2162 112 0 0 chr6 101643280 101643574 -87635980 + AluSg SINE Alu 1 294 -16 2289 259 97 61 chr6 101645581 101645968 -87633586 - L1MC4 LINE L1 -437 7605 7233 828 48 0 0 chr6 101645968 101646073 -87633481 - L1PA5 LINE L1 -2 6152 6048 2289 259 97 61 chr6 101646073 101646972 -87632582 - L1MC4 LINE L1 -809 7233 6273 30 0 0 0 chr6 101647727 101647757 -87631797 + AT_rich Low_complexity Low_complexity 1 30 0 554 168 0 11 chr6 101647961 101648056 -87631498 - FLAM_A SINE Alu -8 134 41 339 25 0 0 chr6 101648106 101648146 -87631408 + (CA)n Simple_repeat Simple_repeat 2 41 0 1961 150 0 3 chr6 101648295 101648602 -87630952 + AluSx SINE Alu 1 306 -6 984 241 33 0 chr6 101648695 101648907 -87630647 + MER58A DNA MER1_type 6 224 0 1223 299 42 16 chr6 101649103 101649693 -87629861 + ERVL LTR ERVL 1968 2617 -3037 445 306 143 9 chr6 101649760 101649976 -87629578 - MIR SINE MIR 0 262 18 1521 172 3 66 chr6 101650009 101650329 -87629225 - AluJb SINE Alu -10 302 3 1486 178 35 7 chr6 101650351 101650668 -87628886 - L1M4 LINE L1 -411 5773 5457 977 294 84 21 chr6 101650683 101651111 -87628443 + ERVL LTR ERVL 2713 3167 -2487 429 237 237 18 chr6 101651177 101651396 -87628158 + LTR50 LTR ERVL 527 793 -2 363 307 0 47 chr6 101651721 101651848 -87627706 - L2 LINE L2 0 3313 3193 347 285 81 25 chr6 101651851 101651998 -87627556 - L1ME LINE L1 -530 5591 5436 2422 74 0 0 chr6 101651998 101652297 -87627257 + AluY SINE Alu 1 299 -12 347 285 81 25 chr6 101652297 101652354 -87627200 - L1ME LINE L1 -685 5436 5384 221 203 109 0 chr6 101652523 101652587 -87626967 - MIR SINE MIR -56 206 136 189 260 40 20 chr6 101652589 101652639 -87626915 + L2 LINE L2 3188 3238 -75 541 280 69 34 chr6 101652667 101652842 -87626712 - MIR SINE MIR -77 185 5 800 258 151 0 chr6 101653139 101653364 -87626190 - MIR SINE MIR 0 262 4 234 0 0 0 chr6 101654766 101654792 -87624762 + (A)n Simple_repeat Simple_repeat 1 26 0 198 0 0 0 chr6 101655227 101655249 -87624305 + (TG)n Simple_repeat Simple_repeat 2 23 0 1330 155 10 0 chr6 101655288 101655495 -87624059 - AluJo SINE Alu -103 209 1 1619 170 4 7 chr6 101656271 101656547 -87623007 - AluJb SINE Alu -37 275 1 203 208 19 0 chr6 101656556 101656609 -87622945 + (TTA)n Simple_repeat Simple_repeat 1 54 0 2790 222 103 17 chr6 101657270 101658377 -87621177 - L1ME1 LINE L1 -5 6161 4959 244 268 0 28 chr6 101658398 101658469 -87621085 - L1ME1 LINE L1 -3558 2588 2520 1191 303 42 16 chr6 101658583 101659173 -87620381 + ERVL LTR ERVL 1968 2617 -3037 455 306 143 9 chr6 101659240 101659456 -87620098 - MIR SINE MIR 0 262 18 1488 172 3 66 chr6 101659489 101659809 -87619745 - AluJb SINE Alu -10 302 3 1497 178 35 7 chr6 101659831 101660148 -87619406 - L1M4 LINE L1 -411 5773 5457 987 294 84 21 chr6 101660163 101660591 -87618963 + ERVL LTR ERVL 2713 3167 -2487 434 237 237 18 chr6 101660657 101660876 -87618678 + LTR50 LTR ERVL 527 793 -2 363 307 0 47 chr6 101661201 101661328 -87618226 - L2 LINE L2 0 3313 3193 347 285 81 25 chr6 101661331 101661478 -87618076 - L1ME LINE L1 -530 5591 5436 2387 74 0 0 chr6 101661478 101661777 -87617777 + AluY SINE Alu 1 299 -12 347 285 81 25 chr6 101661777 101661834 -87617720 - L1ME LINE L1 -685 5436 5384 221 203 109 0 chr6 101662003 101662067 -87617487 - MIR SINE MIR -56 206 136 189 260 40 20 chr6 101662069 101662119 -87617435 + L2 LINE L2 3188 3238 -75 541 280 69 34 chr6 101662147 101662322 -87617232 - MIR SINE MIR -77 185 5 800 258 151 0 chr6 101662619 101662844 -87616710 - MIR SINE MIR 0 262 4 234 0 0 0 chr6 101664246 101664272 -87615282 + (A)n Simple_repeat Simple_repeat 1 26 0 198 0 0 0 chr6 101664707 101664729 -87614825 + (TG)n Simple_repeat Simple_repeat 2 23 0 1330 155 10 0 chr6 101664768 101664975 -87614579 - AluJo SINE Alu -103 209 1 2032 106 0 4 chr6 101665752 101666027 -87613527 - AluSx SINE Alu -38 274 1 1727 155 31 34 chr6 101666285 101666576 -87612978 - AluJb SINE Alu -22 290 1 2683 88 3 3 chr6 101668133 101668498 -87611056 - L1PB1 LINE L1 -5 6146 5782 336 200 0 0 chr6 101668514 101668589 -87610965 + (TA)n Simple_repeat Simple_repeat 2 76 0 278 131 16 49 chr6 101668601 101668662 -87610892 + L1MC4 LINE L1 6658 6716 -1326 * 3989 210 6 11 chr6 101668643 101669605 -87609949 - L1M4 LINE L1 -919 5227 4271 1443 252 27 9 chr6 101669771 101670211 -87609343 - L1ME LINE L1 -1317 4829 4382 1827 172 0 3 chr6 101670300 101670590 -87608964 + AluJo SINE Alu 6 294 -18 3944 209 37 32 chr6 101670592 101670865 -87608689 + L1MB4 LINE L1 4386 4656 -1524 7799 14 3 0 chr6 101670865 101671883 -87607671 + L1PA3 LINE L1 5135 6155 0 3944 209 37 32 chr6 101671883 101673326 -87606228 + L1MB4 LINE L1 4656 6104 -76 23 0 0 0 chr6 101673329 101673352 -87606202 + AT_rich Low_complexity Low_complexity 1 23 0 1186 180 48 31 chr6 101673540 101673829 -87605725 - L1MA9 LINE L1 -57 6255 5962 4173 218 49 32 chr6 101674129 101674721 -87604833 - L1MA9 LINE L1 -343 5969 5389 2134 96 3 51 chr6 101674721 101675034 -87604520 - AluSp SINE Alu -15 298 1 4173 218 49 32 chr6 101675034 101676546 -87603008 - L1MA9 LINE L1 -923 5389 3796 26 0 0 0 chr6 101676872 101676898 -87602656 + AT_rich Low_complexity Low_complexity 1 26 0 812 224 13 0 chr6 101676898 101677054 -87602500 - FAM SINE Alu -17 158 1 21 0 0 0 chr6 101677062 101677083 -87602471 + AT_rich Low_complexity Low_complexity 1 21 0 1962 153 0 3 chr6 101678110 101678404 -87601150 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr6 101678591 101678613 -87600941 + AT_rich Low_complexity Low_complexity 1 22 0 1259 143 19 5 chr6 101679290 101679506 -87600048 + MER20 DNA MER1_type 1 219 0 290 326 54 41 chr6 101680536 101680683 -87598871 - MIR SINE MIR -8 254 106 3908 176 29 8 chr6 101680780 101681945 -87597609 + L1MA9 LINE L1 4968 6287 -12 724 228 159 0 chr6 101682094 101682283 -87597271 - MER20 DNA MER1_type 0 219 1 474 344 70 67 chr6 101682655 101682940 -87596614 - L2 LINE L2 -52 3220 2935 304 209 118 73 chr6 101683249 101683359 -87596195 + L1MC4a LINE L1 5879 5993 -1815 21 36 0 0 chr6 101683783 101683811 -87595743 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 101684226 101684250 -87595304 + AT_rich Low_complexity Low_complexity 1 24 0 1953 144 49 11 chr6 101685173 101685521 -87594033 + MLT1A1 LTR MaLR 1 361 -4 2262 87 0 7 chr6 101685779 101686078 -87593476 + AluSc SINE Alu 1 297 -12 429 327 124 18 chr6 101686081 101686356 -87593198 - L2 LINE L2 -636 2678 2375 284 167 0 0 chr6 101686449 101686491 -87593063 - Tigger5 DNA MER2_type -2281 42 1 528 320 94 25 chr6 101686491 101686928 -87592626 - L2 LINE L2 -971 2343 1877 193 162 54 0 chr6 101687132 101687169 -87592385 + L3b LINE CR1 1527 1565 -18 997 98 0 0 chr6 101687538 101687671 -87591883 + AluSq/x SINE Alu 1 133 -179 2014 108 0 21 chr6 101687675 101687963 -87591591 + AluSc SINE Alu 1 282 -27 259 285 146 81 chr6 101688358 101688987 -87590567 + HAL1 LINE L1 1 670 -1837 508 207 0 43 chr6 101689421 101689537 -87590017 + MLT1D LTR MaLR 60 170 -335 1546 152 52 15 chr6 101689541 101689811 -87589743 - AluJb SINE Alu -4 308 29 551 135 0 0 chr6 101689811 101689900 -87589654 + MLT1D LTR MaLR 417 505 0 2410 78 0 0 chr6 101689931 101690239 -87589315 - AluY SINE Alu -3 308 1 1008 246 83 35 chr6 101690239 101690673 -87588881 + MER113 DNA MER1_type? 39 493 -28 21 71 0 0 chr6 101691804 101691846 -87587708 + AT_rich Low_complexity Low_complexity 1 42 0 569 147 0 33 chr6 101691983 101692214 -87587340 + AluSx SINE Alu 1 291 -19 1892 62 11 11 chr6 101693825 101694085 -87585469 + L1PA7 LINE L1 5882 6141 -13 1072 159 116 50 chr6 101694435 101694712 -87584842 + MER33 DNA MER1_type 30 324 0 228 344 16 0 chr6 101695403 101695525 -87584029 + L1M4 LINE L1 4532 4655 -1491 325 317 80 58 chr6 101695808 101696032 -87583522 + HAL1 LINE L1 1782 2010 -497 22 35 0 0 chr6 101696134 101696163 -87583391 + AT_rich Low_complexity Low_complexity 1 29 0 189 107 0 0 chr6 101696342 101696370 -87583184 + (A)n Simple_repeat Simple_repeat 1 28 0 1962 157 0 0 chr6 101696583 101696888 -87582666 + AluJb SINE Alu 1 305 -7 657 260 52 130 chr6 101696909 101697371 -87582183 + L1M4 LINE L1 3727 4152 -1994 503 306 147 33 chr6 101697376 101697817 -87581737 + L1M4 LINE L1 4266 4782 -1364 2322 98 0 3 chr6 101697817 101698124 -87581430 + AluSq SINE Alu 1 306 -7 503 306 147 33 chr6 101698124 101698228 -87581326 + L1M4 LINE L1 4782 4873 -1273 1122 179 67 18 chr6 101698579 101698803 -87580751 - MER46A DNA MER2_type -1 235 1 690 236 81 0 chr6 101698992 101699166 -87580388 - MER5A DNA MER1_type -1 188 1 872 189 18 75 chr6 101699180 101699408 -87580146 + MER20 DNA MER1_type 5 219 0 26 30 0 0 chr6 101699655 101699688 -87579866 + AT_rich Low_complexity Low_complexity 1 33 0 198 103 0 0 chr6 101699875 101699904 -87579650 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 234 116 0 0 chr6 101699910 101699953 -87579601 + (CA)n Simple_repeat Simple_repeat 2 44 0 408 20 0 0 chr6 101700211 101700260 -87579294 + (CA)n Simple_repeat Simple_repeat 2 50 0 231 303 41 14 chr6 101700273 101700418 -87579136 + L1MEd LINE L1 23 171 -5948 1662 151 16 33 chr6 101700949 101701254 -87578300 - THE1B LTR MaLR 0 364 65 294 148 284 0 chr6 101701611 101701692 -87577862 + L1MB2 LINE L1 5954 6057 -114 2207 95 3 13 chr6 101701692 101701996 -87577558 + AluSg SINE Alu 1 301 -9 202 296 93 81 chr6 101702429 101702601 -87576953 - MIR SINE MIR -8 254 81 659 193 8 0 chr6 101702760 101702879 -87576675 + FLAM_C SINE Alu 1 120 -23 1219 257 90 19 chr6 101703419 101703843 -87575711 + L1MCc LINE L1 17 470 -5953 1446 272 75 60 chr6 101703999 101704670 -87574884 + L1MCc LINE L1 791 1451 -5671 4483 94 23 27 chr6 101704670 101704717 -87574837 + L1PA11 LINE L1 5483 5529 -645 2235 95 3 0 chr6 101704717 101705013 -87574541 - AluSg SINE Alu -13 297 1 4483 94 23 27 chr6 101705013 101705658 -87573896 + L1PA11 LINE L1 5529 6172 -2 1446 272 75 60 chr6 101705658 101706927 -87572627 + L1MCc LINE L1 1451 2960 -4162 21 0 0 0 chr6 101706998 101707019 -87572535 + AT_rich Low_complexity Low_complexity 1 21 0 710 147 0 0 chr6 101707042 101707151 -87572403 + FLAM_C SINE Alu 19 127 -16 887 189 6 6 chr6 101707205 101707364 -87572190 + AluSg/x SINE Alu 136 294 -18 1328 242 94 52 chr6 101707368 101708153 -87571401 + L1MCc LINE L1 3010 3827 -3114 1768 182 3 0 chr6 101708165 101708461 -87571093 + AluJb SINE Alu 3 299 -13 23 0 0 0 chr6 101708471 101708494 -87571060 + AT_rich Low_complexity Low_complexity 1 23 0 427 261 50 37 chr6 101708531 101708692 -87570862 - LTR41 LTR ERVL -96 677 515 24 53 0 0 chr6 101709006 101709044 -87570510 + AT_rich Low_complexity Low_complexity 1 38 0 320 287 70 39 chr6 101710872 101711001 -87568553 - L2 LINE L2 0 3272 3140 263 163 20 0 chr6 101711385 101711434 -87568120 - MIR SINE MIR -27 235 186 673 177 61 61 chr6 101711768 101711966 -87567588 + LTR45 LTR ERV1 292 525 0 517 240 208 0 chr6 101711967 101712121 -87567433 - MIR SINE MIR -74 188 3 291 316 44 44 chr6 101712256 101712370 -87567184 + L2 LINE L2 3196 3309 -4 1116 234 123 87 chr6 101713342 101713935 -87565619 + MER77 LTR ERV1 54 707 -7 714 176 0 37 chr6 101715758 101715894 -87563660 + FLAM_C SINE Alu 3 133 0 2633 42 0 0 chr6 101716146 101716455 -87563099 - AluY SINE Alu -2 309 1 640 160 71 54 chr6 101716616 101716802 -87562752 + L1MA9 LINE L1 6088 6284 -50 23 0 0 0 chr6 101716970 101716993 -87562561 + AT_rich Low_complexity Low_complexity 1 23 0 1762 211 25 8 chr6 101716996 101717395 -87562159 - L1MB4 LINE L1 -76 6104 5699 2174 99 27 0 chr6 101717590 101717883 -87561671 + AluSq SINE Alu 1 301 -12 23 33 0 0 chr6 101718459 101718489 -87561065 + AT_rich Low_complexity Low_complexity 1 30 0 239 0 32 0 chr6 101719489 101719520 -87560034 + (ATG)n Simple_repeat Simple_repeat 1 32 0 2901 214 37 45 chr6 101719665 101720549 -87559005 + L1M4 LINE L1 4076 4952 -1194 1067 221 72 68 chr6 101722068 101722434 -87557120 + L1MC4a LINE L1 4819 5189 -957 2103 102 3 29 chr6 101722434 101722747 -87556807 + AluSq SINE Alu 1 305 -8 1067 221 72 68 chr6 101722747 101722883 -87556671 + L1MC4a LINE L1 5189 5323 -823 1541 168 45 60 chr6 101723409 101723761 -87555793 - MER7A DNA MER2_type 0 346 2 743 204 61 28 chr6 101723782 101723963 -87555591 - MER3 DNA MER1_type -22 187 1 2133 104 40 0 chr6 101724033 101724332 -87555222 - AluSx SINE Alu -1 311 1 556 118 25 10 chr6 101724510 101724628 -87554926 - MLT1E LTR MaLR -452 141 1 310 256 77 8 chr6 101724679 101724796 -87554758 + L1MC4a LINE L1 5629 5753 -368 2115 130 3 0 chr6 101725791 101726090 -87553464 + AluSp SINE Alu 1 300 -13 446 120 13 0 chr6 101726090 101726165 -87553389 + (TA)n Simple_repeat Simple_repeat 1 76 0 31224 99 15 66 chr6 101726388 101732868 -87546686 + L1PA7 LINE L1 12 6141 -13 2209 109 3 0 chr6 101733035 101733338 -87546216 + AluSg SINE Alu 5 308 -2 25 0 0 0 chr6 101734192 101734217 -87545337 + AT_rich Low_complexity Low_complexity 1 25 0 675 207 9 0 chr6 101735143 101735259 -87544295 + FLAM_A SINE Alu 1 117 -16 441 0 0 0 chr6 101735265 101735314 -87544240 + (CA)n Simple_repeat Simple_repeat 2 50 0 264 135 40 0 chr6 101735314 101735388 -87544166 + (TA)n Simple_repeat Simple_repeat 1 77 0 23 0 0 0 chr6 101735599 101735622 -87543932 + AT_rich Low_complexity Low_complexity 1 23 0 1701 193 7 0 chr6 101735750 101736045 -87543509 + AluJb SINE Alu 2 298 -14 1803 158 3 13 chr6 101736401 101736711 -87542843 + AluJo SINE Alu 1 307 -5 390 309 70 30 chr6 101736809 101737181 -87542373 + L1ME3 LINE L1 3695 4081 -2065 3080 229 41 32 chr6 101737410 101738353 -87541201 + L1ME3 LINE L1 3997 4948 -1198 465 253 62 97 chr6 101738365 101738579 -87540975 + L1MC4a LINE L1 5721 5920 -1888 1725 198 3 0 chr6 101738579 101738877 -87540677 + AluJb SINE Alu 2 300 -12 465 253 62 97 chr6 101738877 101739002 -87540552 + L1MC4a LINE L1 5920 6048 -1760 1803 178 0 7 chr6 101739684 101739987 -87539567 - AluJo SINE Alu -10 302 2 205 288 0 0 chr6 101741695 101741754 -87537800 + (TAA)n Simple_repeat Simple_repeat 2 60 0 1754 145 7 11 chr6 101742079 101742391 -87537163 + AluJb SINE Alu 1 311 0 783 267 161 3 chr6 101742461 101742802 -87536752 + L1MC4a LINE L1 5503 5897 -1911 2444 81 3 0 chr6 101742838 101743145 -87536409 - AluSg SINE Alu -2 308 1 336 189 0 0 chr6 101743201 101743275 -87536279 + (TA)n Simple_repeat Simple_repeat 2 75 0 328 294 39 29 chr6 101743863 101743965 -87535589 + MER91C DNA MER1_type 37 139 -1 787 138 0 36 chr6 101744095 101744233 -87535321 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr6 101744332 101744356 -87535198 + AT_rich Low_complexity Low_complexity 1 24 0 210 344 107 37 chr6 101745509 101745753 -87533801 + L2 LINE L2 2628 2888 -426 1809 142 7 42 chr6 101745754 101746064 -87533490 + AluSx SINE Alu 1 299 -13 27 0 0 0 chr6 101746443 101746470 -87533084 + AT_rich Low_complexity Low_complexity 1 27 0 260 358 74 0 chr6 101746536 101746631 -87532923 + L2 LINE L2 3189 3290 -23 256 203 127 0 chr6 101746828 101746907 -87532647 - HsTC2 DNA Tc2 -1809 89 1 340 281 128 41 chr6 101746999 101747293 -87532261 + L1ME3 LINE L1 5087 5419 -743 394 228 132 94 chr6 101747396 101747918 -87531636 + L1ME3 LINE L1 5387 5928 -234 396 206 147 7 chr6 101749164 101749300 -87530254 - L1ME3A LINE L1 0 6170 6016 22 0 0 0 chr6 101749757 101749779 -87529775 + AT_rich Low_complexity Low_complexity 1 22 0 194 133 44 44 chr6 101750201 101750246 -87529308 - L2 LINE L2 -534 2780 2736 589 176 59 7 chr6 101750341 101750477 -87529077 + L1MB7 LINE L1 6042 6184 0 22 0 0 0 chr6 101750483 101750505 -87529049 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 101751649 101751670 -87527884 + AT_rich Low_complexity Low_complexity 1 21 0 207 360 40 0 chr6 101751740 101751815 -87527739 + MER91B DNA MER1_type 1 78 -112 246 156 0 0 chr6 101751822 101751867 -87527687 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 190 315 157 0 chr6 101751997 101752086 -87527468 - MER5B DNA MER1_type -6 172 70 2354 74 3 0 chr6 101752515 101752812 -87526742 + AluSg SINE Alu 1 298 -12 1784 116 30 59 chr6 101753210 101753513 -87526041 - AluSx SINE Alu -13 299 6 23 0 0 0 chr6 101753950 101753973 -87525581 + AT_rich Low_complexity Low_complexity 1 23 0 244 312 29 80 chr6 101754351 101754687 -87524867 - L2 LINE L2 -2789 525 202 189 195 0 0 chr6 101754787 101754828 -87524726 + A-rich Low_complexity Low_complexity 1 41 0 25 51 0 0 chr6 101754841 101754880 -87524674 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr6 101755706 101755727 -87523827 + (CA)n Simple_repeat Simple_repeat 2 22 0 262 283 38 85 chr6 101756669 101756775 -87522779 + L2 LINE L2 3203 3303 -10 414 293 98 46 chr6 101756776 101757186 -87522368 + L1ME4a LINE L1 5676 6106 -15 28 29 0 0 chr6 101757508 101757543 -87522011 + AT_rich Low_complexity Low_complexity 1 35 0 227 337 61 41 chr6 101757568 101757666 -87521888 - L2 LINE L2 -35 3278 3179 649 193 108 75 chr6 101757798 101758010 -87521544 - MIR SINE MIR -1 261 43 229 362 23 40 chr6 101758105 101758279 -87521275 - L2 LINE L2 -336 2977 2807 1008 170 0 0 chr6 101758284 101758443 -87521111 - FRAM SINE Alu -6 160 2 404 276 39 28 chr6 101758534 101758715 -87520839 - LTR33A LTR ERVL -18 505 323 311 272 48 12 chr6 101759090 101759221 -87520333 - LTR33A LTR ERVL -343 178 50 428 315 123 37 chr6 101759256 101759580 -87519974 - L2 LINE L2 -564 2750 2399 650 219 8 0 chr6 101759981 101760100 -87519454 + AluSq/x SINE Alu 1 120 -193 3235 193 68 7 chr6 101761359 101761975 -87517579 + MER21B LTR ERV1 1 654 -209 329 254 58 110 chr6 101763826 101763933 -87515621 + MIR SINE MIR 73 169 -93 2488 154 42 4 chr6 101763933 101764407 -87515147 + L1MB3 LINE L1 5690 6181 -2 329 254 58 110 chr6 101764407 101764472 -87515082 + MIR SINE MIR 169 236 -26 252 154 0 0 chr6 101764550 101764602 -87514952 + (CTA)n Simple_repeat Simple_repeat 2 53 0 23 78 0 0 chr6 101765189 101765240 -87514314 + AT_rich Low_complexity Low_complexity 1 51 0 277 292 14 0 chr6 101766179 101766251 -87513303 + MIR SINE MIR 73 145 -63 741 198 123 0 chr6 101766268 101766430 -87513124 + MER5A DNA MER1_type 4 188 -1 2104 133 0 0 chr6 101766491 101766785 -87512769 + AluSx SINE Alu 1 294 -18 322 138 7 0 chr6 101817113 101817165 -87462389 + FLAM SINE Alu 85 130 -3 281 170 21 0 chr6 101817334 101817381 -87462173 - MER46C DNA MER2_type 0 338 291 328 248 80 16 chr6 101817424 101817549 -87462005 - L1MC5 LINE L1 -32 7929 7797 1182 152 5 42 chr6 101817648 101817865 -87461689 - MER2 DNA MER2_type -134 211 3 23 0 0 0 chr6 101817886 101817909 -87461645 + AT_rich Low_complexity Low_complexity 1 23 0 767 182 8 0 chr6 101817909 101818030 -87461524 - FLAM_A SINE Alu -11 122 1 663 102 0 124 chr6 101818038 101818175 -87461379 - L1MA5 LINE L1 -2 6298 6179 851 274 102 33 chr6 101818178 101818361 -87461193 - L1MC5 LINE L1 -185 7776 7607 2228 67 0 8 chr6 101818361 101818628 -87460926 - AluY SINE Alu -19 292 28 851 274 102 33 chr6 101818628 101819047 -87460507 - L1MC5 LINE L1 -354 7607 7260 516 257 79 82 chr6 101819042 101819345 -87460209 - L1ME LINE L1 -343 5778 5477 * 322 321 85 33 chr6 101820056 101820268 -87459286 - L1ME LINE L1 -633 5488 5266 794 187 0 8 chr6 101820328 101820451 -87459103 - FLAM_A SINE Alu -11 122 1 1631 204 17 0 chr6 101820554 101820843 -87458711 - AluJo SINE Alu -14 298 5 401 235 0 0 chr6 101821005 101821086 -87458468 + MIR SINE MIR 57 137 -125 1953 138 0 7 chr6 101821148 101821437 -87458117 + AluJb SINE Alu 14 300 -12 193 314 0 43 chr6 101821487 101821557 -87457997 - MER5A DNA MER1_type 0 189 123 971 158 32 0 chr6 101821562 101821720 -87457834 + FAM SINE Alu 6 168 -17 362 319 9 18 chr6 101821724 101821837 -87457717 - MER5A DNA MER1_type -58 131 20 26 0 0 0 chr6 101822366 101822392 -87457162 + AT_rich Low_complexity Low_complexity 1 26 0 500 311 54 39 chr6 101822473 101822702 -87456852 + MIR SINE MIR 25 262 0 2170 122 0 25 chr6 101823067 101823207 -87456347 + AluSx SINE Alu 1 143 -169 2311 99 3 0 chr6 101823207 101823511 -87456043 + AluSp SINE Alu 1 305 -8 2170 122 0 25 chr6 101823511 101823689 -87455865 + AluSx SINE Alu 143 311 -1 1804 159 0 24 chr6 101823749 101824044 -87455510 + AluJo SINE Alu 1 288 -24 26 30 0 0 chr6 101824044 101824077 -87455477 + AT_rich Low_complexity Low_complexity 1 33 0 389 227 59 50 chr6 101824248 101824367 -87455187 + L2 LINE L2 3185 3304 -9 297 223 125 27 chr6 101824369 101824529 -87455025 + L1ME2 LINE L1 5743 5916 -248 256 138 0 35 chr6 101825611 101825669 -87453885 + (TA)n Simple_repeat Simple_repeat 1 56 0 312 129 16 0 chr6 101825671 101825733 -87453821 - L1MCa LINE L1 -4358 2068 2006 254 326 0 0 chr6 101825726 101825815 -87453739 + L1MC4 LINE L1 6614 6702 -1340 * 267 272 0 22 chr6 101825822 101825914 -87453640 + L1MC4 LINE L1 6614 6703 -1339 318 200 0 82 chr6 101825944 101826054 -87453500 - L1MC4 LINE L1 -1339 6703 6603 24 0 0 0 chr6 101826058 101826082 -87453472 + AT_rich Low_complexity Low_complexity 1 24 0 473 164 0 0 chr6 101826215 101826282 -87453272 + AluJ/FLAM SINE Alu 2 68 -244 22 0 0 0 chr6 101826308 101826330 -87453224 + AT_rich Low_complexity Low_complexity 1 22 0 1068 152 136 0 chr6 101826785 101826983 -87452571 - MER46A DNA MER2_type -11 225 1 388 233 141 43 chr6 101826856 101827019 -87452535 + MER46A DNA MER2_type 1 179 -57 * 423 303 110 24 chr6 101827031 101827368 -87452186 + L1MC4a LINE L1 5812 6177 -1631 549 84 0 0 chr6 101827556 101827627 -87451927 + MER11B LTR ERVK 1 71 -1165 4095 136 203 23 chr6 101827628 101828497 -87451057 + MER11B LTR ERVK 208 1232 -4 2123 149 16 25 chr6 101828950 101829318 -87450236 - L1MA4A LINE L1 -3 6300 5936 811 199 8 15 chr6 101829318 101829449 -87450105 - FRAM SINE Alu -25 151 22 14419 171 62 32 chr6 101829450 101829851 -87449703 - L1MB2 LINE L1 -218 6655 6267 1489 199 6 45 chr6 101829851 101830162 -87449392 - AluJo SINE Alu -13 299 1 14419 171 62 32 chr6 101830162 101830468 -87449086 - L1MB2 LINE L1 -606 6267 5972 1554 173 103 0 chr6 101830468 101830740 -87448814 - AluJo SINE Alu -12 300 1 14419 171 62 32 chr6 101830740 101831258 -87448296 - L1MB2 LINE L1 -901 5972 5471 844 177 0 0 chr6 101831258 101831382 -87448172 + FLAM_C SINE Alu 1 124 -9 14419 171 62 32 chr6 101831382 101831739 -87447815 - L1MB2 LINE L1 -1402 5471 5126 1242 229 6 44 chr6 101831739 101832058 -87447496 - AluJo SINE Alu -5 307 1 14419 171 62 32 chr6 101832058 101832887 -87446667 - L1MB2 LINE L1 -1747 5126 4323 2027 125 3 10 chr6 101832887 101833184 -87446370 + AluSp SINE Alu 1 295 -18 14419 171 62 32 chr6 101833184 101835596 -87443958 - L1MB2 LINE L1 -2550 4323 1985 1841 122 31 17 chr6 101835596 101835883 -87443671 - AluJo SINE Alu -21 291 1 2112 143 0 9 chr6 101835890 101836205 -87443349 - AluSx SINE Alu 0 312 1 14419 171 62 32 chr6 101836205 101836436 -87443118 - L1MB2 LINE L1 -4893 1980 1382 1071 215 88 35 chr6 101836490 101836830 -87442724 + L1MD2 LINE L1 5999 6356 -3 2013 151 0 0 chr6 101837103 101837394 -87442160 - AluSx SINE Alu -21 291 1 1026 50 0 0 chr6 101837492 101837611 -87441943 - AluY SINE Alu -14 297 179 1046 146 22 43 chr6 101837746 101837931 -87441623 - AluJo SINE Alu -111 201 21 1896 147 7 3 chr6 101838211 101838497 -87441057 - AluJb SINE Alu -25 287 1 2853 215 39 9 chr6 101838619 101839288 -87440266 + L2 LINE L2 1888 2576 -738 432 168 0 203 chr6 101839307 101839504 -87440050 - L2 LINE L2 -1 3312 3156 617 332 143 15 chr6 101839566 101839964 -87439590 + L2 LINE L2 978 1426 -1888 677 258 91 18 chr6 101839966 101840187 -87439367 - MIR SINE MIR -1 261 25 478 280 103 60 chr6 101841114 101841464 -87438090 + L2 LINE L2 1830 2194 -1120 758 302 102 25 chr6 101841470 101841874 -87437680 + MLT1J2 LTR MaLR 3 437 -13 3688 142 18 2 chr6 101841881 101842444 -87437110 + Tigger1 DNA MER2_type 24 595 -1823 6622 62 22 53 chr6 101842452 101845005 -87434549 + SVA Other Other 1 1434 0 9075 106 35 75 chr6 101845007 101845085 -87434469 + Tigger1 DNA MER2_type 583 663 -1755 2282 82 13 20 chr6 101845085 101845388 -87434166 - AluSg SINE Alu -9 301 1 9075 106 35 75 chr6 101845388 101846512 -87433042 + Tigger1 DNA MER2_type 663 1830 -588 1023 196 0 0 chr6 101846512 101846675 -87432879 + FRAM SINE Alu 1 163 -3 2184 135 0 0 chr6 101846681 101846985 -87432569 - AluSx SINE Alu -8 304 1 9075 106 35 75 chr6 101846985 101847350 -87432204 + Tigger1 DNA MER2_type 1835 2095 -323 16344 155 45 29 chr6 101847351 101850587 -87428967 + L1PB2 LINE L1 136 3317 -3550 2117 125 0 47 chr6 101850587 101850906 -87428648 + AluSx SINE Alu 1 304 -8 16344 155 45 29 chr6 101850906 101851097 -87428457 + L1PB2 LINE L1 3317 3503 -3364 2237 101 3 3 chr6 101851097 101851393 -87428161 + AluSg SINE Alu 3 298 -12 16344 155 45 29 chr6 101851393 101851592 -87427962 + L1PB2 LINE L1 3503 3697 -3170 2236 97 17 10 chr6 101851592 101851891 -87427663 + AluSx SINE Alu 6 306 -6 16344 155 45 29 chr6 101851891 101852583 -87426971 + L1PB2 LINE L1 3697 4376 -2491 2113 128 20 0 chr6 101852583 101852887 -87426667 + AluSx SINE Alu 1 310 -2 16344 155 45 29 chr6 101852887 101855190 -87424364 + L1PB2 LINE L1 4376 6867 0 439 322 99 48 chr6 101855237 101855693 -87423861 + L2 LINE L2 2363 2841 -473 216 250 150 0 chr6 101856036 101856096 -87423458 + L2 LINE L2 3240 3308 -5 186 43 0 0 chr6 101856107 101856130 -87423424 + (CACCAT)n Simple_repeat Simple_repeat 5 27 0 225 256 0 0 chr6 101856134 101856177 -87423377 - AluJ/monomer SINE Alu -132 43 1 1051 90 0 0 chr6 101856278 101856411 -87423143 + AluSq/x SINE Alu 1 133 -180 236 98 0 24 chr6 101856411 101856452 -87423102 + (GAAAA)n Simple_repeat Simple_repeat 5 44 0 3365 75 13 40 chr6 101856755 101857146 -87422408 + MLT2A1 LTR ERVL 1 380 -64 252 86 0 0 chr6 101857146 101857181 -87422373 + (TG)n Simple_repeat Simple_repeat 2 36 0 3365 75 13 40 chr6 101857181 101857243 -87422311 + MLT2A1 LTR ERVL 380 442 -2 1226 103 0 0 chr6 101857267 101857423 -87422131 - AluSg/x SINE Alu -16 296 141 288 136 91 0 chr6 101857424 101857490 -87422064 - L1M LINE L1 -776 5386 5315 2493 174 77 50 chr6 101857513 101858133 -87421421 + L1ME1 LINE L1 5527 6163 -3 910 126 0 15 chr6 101858176 101858311 -87421243 + AluJ SINE Alu 1 133 -179 1476 80 11 0 chr6 101858317 101858505 -87421049 + AluSx SINE Alu 1 190 -122 482 83 0 0 chr6 101858505 101858565 -87420989 + AluSx SINE Alu 223 282 -27 522 151 23 0 chr6 101858597 101858683 -87420871 + AluJ SINE Alu 123 210 -102 219 146 0 0 chr6 101859568 101859609 -87419945 + (CCCCG)n Simple_repeat Simple_repeat 4 44 0 994 163 150 26 chr6 101861414 101861647 -87417907 - AluJb SINE Alu -20 292 31 1864 175 61 9 chr6 101861647 101861973 -87417581 + MER61A LTR ERV1 1 343 0 1355 156 86 14 chr6 101861975 101862472 -87417082 + MER61A-int LTR ERV1 3 571 -4646 * 7920 109 45 48 chr6 101862448 101862535 -87417019 + MER61A-int LTR ERV1 1396 1482 -3533 1962 101 91 0 chr6 101862535 101862811 -87416743 + AluSp SINE Alu 1 301 -12 2315 110 7 3 chr6 101862821 101863129 -87416425 + AluSx SINE Alu 1 309 -3 7920 109 45 48 chr6 101863129 101864128 -87415426 + MER61A-int LTR ERV1 1491 2492 -2523 2253 122 3 3 chr6 101864128 101864440 -87415114 - AluSx SINE Alu 0 312 1 7920 109 45 48 chr6 101864440 101864920 -87414634 + MER61A-int LTR ERV1 2492 3908 -1107 7698 62 130 37 chr6 101864920 101866078 -87413476 - MER11A LTR ERVK 0 1266 1 15528 85 35 19 chr6 101866078 101868225 -87411329 + MER61A-int LTR ERV1 3031 5210 -7 250 143 41 0 chr6 101868414 101868429 -87411125 - Alu SINE Alu -247 52 39 2104 170 15 6 chr6 101868429 101868765 -87410789 + MER61A LTR ERV1 5 343 0 250 143 41 0 chr6 101868765 101868798 -87410756 - Alu SINE Alu -260 39 2 365 220 10 80 chr6 101868798 101868898 -87410656 + MER67C LTR ERV1 137 229 -481 367 159 63 0 chr6 101868898 101868990 -87410564 - FLAM_A SINE Alu 0 143 48 2073 191 74 17 chr6 101868992 101869454 -87410100 + MER67C LTR ERV1 223 710 0 239 239 141 14 chr6 101870071 101870142 -87409412 + MER69A DNA AcHobo 29 108 -69 1772 205 40 55 chr6 101870221 101870267 -87409287 + MLT1C LTR MaLR 1 46 -421 1912 132 0 53 chr6 101870267 101870585 -87408969 + AluJb SINE Alu 1 301 -11 1772 205 40 55 chr6 101870585 101871012 -87408542 + MLT1C LTR MaLR 46 467 0 766 215 41 12 chr6 101871409 101871581 -87407973 - MLT1C LTR MaLR -3 464 288 2605 115 33 70 chr6 101871623 101871841 -87407713 + MER65A LTR ERV1 1 195 -250 2012 110 4 0 chr6 101871841 101872114 -87407440 + AluSx SINE Alu 1 274 -38 2605 115 33 70 chr6 101872114 101872355 -87407199 + MER65A LTR ERV1 195 443 -2 404 111 42 14 chr6 101872489 101872561 -87406993 + MER84 LTR ERVI 1 74 -433 3317 125 28 26 chr6 101872561 101873005 -87406549 + MER84 LTR ERV1 2 449 -58 1800 124 15 4 chr6 101873005 101873272 -87406282 - AluSx SINE Alu -7 305 36 3317 125 28 26 chr6 101873272 101873332 -87406222 + MER84 LTR ERV1 449 507 0 254 261 117 64 chr6 101873428 101873575 -87405979 + L1M4 LINE L1 4793 4960 -1186 2378 84 3 3 chr6 101873575 101873874 -87405680 + AluSp SINE Alu 2 300 -13 254 261 117 64 chr6 101873874 101873975 -87405579 + L1M4 LINE L1 4960 5054 -1092 23 0 0 0 chr6 101873981 101874004 -87405550 + AT_rich Low_complexity Low_complexity 1 23 0 2165 116 0 0 chr6 101874005 101874298 -87405256 - L1PB3 LINE L1 -4 6150 5858 872 128 0 23 chr6 101874298 101874431 -87405123 + AluJb SINE Alu 3 132 -180 32 26 0 0 chr6 101874432 101874471 -87405083 + AT_rich Low_complexity Low_complexity 1 39 0 6946 136 17 41 chr6 101874471 101875037 -87404517 - L1PB3 LINE L1 -286 5868 5290 1988 136 11 0 chr6 101875037 101875324 -87404230 - AluJo SINE Alu -22 290 1 6946 136 17 41 chr6 101875324 101876648 -87402906 - L1PB3 LINE L1 -864 5290 3997 23 33 0 0 chr6 101876648 101876678 -87402876 + AT_rich Low_complexity Low_complexity 1 30 0 741 121 0 135 chr6 101876678 101876819 -87402735 - FLAM_C SINE Alu -19 124 3 1387 173 19 4 chr6 101876819 101877085 -87402469 - L1PB3 LINE L1 -2142 4004 3735 1721 63 15 0 chr6 101877334 101877602 -87401952 - AluSc SINE Alu 0 341 71 2105 114 31 7 chr6 101877678 101877968 -87401586 - AluSx SINE Alu -15 297 1 188 271 62 0 chr6 101878434 101878482 -87401072 - L2 LINE L2 -837 2477 2427 22 0 0 0 chr6 101879004 101879026 -87400528 + AT_rich Low_complexity Low_complexity 1 22 0 201 147 0 0 chr6 101879095 101879129 -87400425 + (CATA)n Simple_repeat Simple_repeat 3 36 0 2014 110 21 7 chr6 101879135 101879417 -87400137 - AluSx SINE Alu -26 286 1 499 285 23 0 chr6 101879417 101879547 -87400007 - MIR SINE MIR -76 186 54 197 292 71 35 chr6 101879577 101879690 -87399864 + MIR SINE MIR 37 153 -55 421 232 206 26 chr6 101879698 101879853 -87399701 - MER5A DNA MER1_type -2 187 5 180 270 135 48 chr6 101880440 101880566 -87398988 - MIR SINE MIR -50 212 76 468 143 5 8 chr6 101880688 101880907 -87398647 + AluJo SINE Alu 1 292 -20 348 254 64 9 chr6 101881287 101881397 -87398157 - L2 LINE L2 0 3313 3198 685 226 175 6 chr6 101881578 101881755 -87397799 + MER63A DNA MER1_type 4 210 0 221 197 28 42 chr6 101881833 101881904 -87397650 + GA-rich Low_complexity Low_complexity 3 72 0 253 313 0 0 chr6 101882079 101882146 -87397408 + L2 LINE L2 3209 3275 -38 945 138 0 14 chr6 101882346 101882491 -87397063 + FLAM_C SINE Alu 1 143 0 2420 93 3 0 chr6 101882497 101882807 -87396747 + AluSp SINE Alu 1 311 -2 36 62 0 0 chr6 101882942 101883006 -87396548 + AT_rich Low_complexity Low_complexity 1 64 0 662 189 0 0 chr6 101883050 101883156 -87396398 + L2 LINE L2 3208 3313 0 646 252 83 14 chr6 101883177 101883395 -87396159 - MIR SINE MIR -12 250 18 1905 153 3 3 chr6 101883422 101883723 -87395831 - AluJo SINE Alu -11 301 1 1081 226 9 0 chr6 101883842 101884054 -87395500 + MIR SINE MIR 3 216 -46 235 355 0 0 chr6 101884106 101884199 -87395355 + L2 LINE L2 3209 3301 -12 2242 129 0 0 chr6 101884383 101884685 -87394869 - AluSx SINE Alu -9 303 2 2946 117 22 20 chr6 101885590 101885993 -87393561 - MER65A LTR ERV1 0 445 39 251 50 50 0 chr6 101885993 101886033 -87393521 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 2946 117 22 20 chr6 101886033 101886073 -87393481 - MER65A LTR ERV1 -406 39 1 622 156 117 16 chr6 101886162 101886290 -87393264 + MER5B DNA MER1_type 4 144 -34 865 219 6 0 chr6 101886292 101886461 -87393093 + FRAM SINE Alu 1 170 -6 210 289 0 0 chr6 101886461 101886506 -87393048 - MER5B DNA MER1_type -133 45 1 2482 93 0 0 chr6 101886509 101886820 -87392734 + AluSp SINE Alu 1 311 -2 659 229 0 0 chr6 101886845 101886954 -87392600 + FLAM_C SINE Alu 2 110 -33 288 273 86 14 chr6 101887321 101887460 -87392094 + MIR SINE MIR 100 248 -14 1971 144 0 25 chr6 101887572 101888071 -87391483 + AluSx SINE Alu 1 312 0 1275 197 83 97 chr6 101888150 101888401 -87391153 - MER2 DNA MER2_type 0 345 99 915 164 0 8 chr6 101888401 101888535 -87391019 - FLAM_A SINE Alu 0 133 1 1275 197 83 97 chr6 101888535 101888633 -87390921 - MER2 DNA MER2_type -246 99 1 1418 187 22 0 chr6 101889161 101889386 -87390168 + MER21B LTR ERV1 5 234 -629 1808 210 69 52 chr6 101889840 101890018 -87389536 - L1M4 LINE L1 -1200 4946 4773 1580 134 55 12 chr6 101890018 101890271 -87389283 - AluJo SINE Alu -16 296 33 1808 210 69 52 chr6 101890271 101890668 -87388886 - L1M4 LINE L1 -1373 4773 4361 897 242 57 86 chr6 101890679 101890797 -87388757 - L1M4 LINE L1 -3413 2733 2613 2409 73 20 0 chr6 101890797 101891098 -87388456 - AluSp SINE Alu -6 307 1 897 242 57 86 chr6 101891098 101891279 -87388275 - L1M4 LINE L1 -3533 2613 2447 1862 158 3 7 chr6 101891279 101891583 -87387971 + AluJb SINE Alu 1 303 -9 897 242 57 86 chr6 101891583 101891687 -87387867 - L1M4 LINE L1 -3699 2447 2341 1586 166 36 23 chr6 101891743 101892073 -87387481 + LTR49-int LTR ERV1 1372 2164 -4099 1871 179 0 10 chr6 101892081 101892393 -87387161 + AluJb SINE Alu 1 309 -3 4588 184 32 61 chr6 101892403 101892651 -87386903 + LTR49-int LTR ERV1 751 1005 -5326 1783 183 20 10 chr6 101892651 101892957 -87386597 - AluJb SINE Alu -1 311 3 4588 184 32 61 chr6 101892957 101893483 -87386071 + LTR49-int LTR ERV1 1005 1545 -4786 189 0 0 0 chr6 101893483 101893504 -87386050 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2039 117 4 4 chr6 101893504 101893785 -87385769 - AluSq SINE Alu -32 281 1 4588 184 32 61 chr6 101893785 101894064 -87385490 + LTR49-int LTR ERV1 1543 2658 -3673 255 254 68 0 chr6 101894064 101894123 -87385431 + MER31A LTR ERV1 35 97 -388 1160 166 19 94 chr6 101894123 101894354 -87385200 + LTR49-int LTR ERV1 2679 2883 -3448 630 246 8 22 chr6 101894354 101894488 -87385066 + FLAM_A SINE Alu 1 132 -1 1160 166 19 94 chr6 101894488 101894564 -87384990 + LTR49-int LTR ERV1 2883 2963 -3368 2162 143 0 0 chr6 101894578 101894879 -87384675 - AluSx SINE Alu -10 302 2 1796 161 21 4 chr6 101894889 101895168 -87384386 - AluJo SINE Alu -25 287 4 493 171 225 27 chr6 101895195 101895306 -87384248 - FLAM_A SINE Alu 0 133 1 2046 179 18 35 chr6 101895310 101895707 -87383847 + LTR49-int LTR ERV1 2951 3340 -2991 1259 180 32 73 chr6 101895764 101895888 -87383666 + LTR49-int LTR ERV1 2622 2750 -2130 1635 152 106 0 chr6 101895888 101896152 -87383402 + AluSx SINE Alu 1 292 -20 1259 180 32 73 chr6 101896152 101896409 -87383145 + LTR49-int LTR ERV1 2750 2963 -1917 771 181 0 0 chr6 101896519 101896635 -87382919 + FLAM_C SINE Alu 3 118 -25 689 197 81 142 chr6 101896653 101897013 -87382541 + LTR49-int LTR ERV1 3184 3521 -1359 1420 241 20 13 chr6 101897013 101897312 -87382242 - AluJb SINE Alu 0 302 2 567 117 100 75 chr6 101897664 101897784 -87381770 + MER4D-int LTR ERV1 3118 4384 -1883 835 192 45 106 chr6 101897825 101898052 -87381502 + MER4D-int LTR ERV1 4567 4806 -1982 1926 144 11 0 chr6 101898052 101898336 -87381218 - AluJo SINE Alu -25 287 1 835 192 45 106 chr6 101898336 101898377 -87381177 + MER4D-int LTR ERV1 4806 5247 -1541 1435 188 52 4 chr6 101898378 101898649 -87380905 - AluJo SINE Alu -7 305 22 5832 149 88 55 chr6 101898792 101899390 -87380164 + MER4D-int LTR ERV1 4801 5378 -953 2460 148 87 0 chr6 101899390 101899782 -87379772 + MSTA LTR MaLR 1 426 -2 1667 141 31 45 chr6 101899782 101900073 -87379481 + AluJo SINE Alu 10 296 -16 5832 149 88 55 chr6 101900073 101900085 -87379469 + MER4D-int LTR ERV1 5378 5388 -943 4174 153 106 55 chr6 101900085 101900180 -87379374 + MER4D LTR ERV1 1 90 -813 2103 144 0 3 chr6 101900180 101900493 -87379061 + AluSx SINE Alu 1 312 0 4174 153 106 55 chr6 101900493 101900631 -87378923 + MER4D LTR ERV1 90 219 -684 1848 151 3 36 chr6 101900631 101900936 -87378618 - AluSx SINE Alu -17 295 1 4174 153 106 55 chr6 101900936 101901271 -87378283 + MER4D LTR ERV1 219 535 -368 1912 101 0 8 chr6 101901271 101901529 -87378025 - AluSc SINE Alu 0 309 54 4174 153 106 55 chr6 101901529 101901671 -87377883 + MER4D LTR ERV1 535 668 -235 2336 79 14 0 chr6 101901671 101901961 -87377593 + AluSp SINE Alu 1 294 -19 4174 153 106 55 chr6 101901961 101902106 -87377448 + MER4D LTR ERV1 668 903 0 5832 149 88 55 chr6 101902106 101902316 -87377238 + MER4D-int LTR ERV1 5388 5590 -741 1917 148 0 30 chr6 101902316 101902621 -87376933 + AluJb SINE Alu 1 296 -16 5832 149 88 55 chr6 101902621 101903066 -87376488 + MER4D-int LTR ERV1 5590 6111 -220 531 139 0 0 chr6 101903066 101903145 -87376409 - MER41A LTR ERV1 0 554 476 3421 126 36 9 chr6 101903152 101903701 -87375853 + MER50 LTR ERV1 8 571 -163 1295 145 40 0 chr6 101903702 101903902 -87375652 - AluSx SINE Alu -4 306 99 392 74 0 0 chr6 101903911 101903965 -87375589 - MER50 LTR ERV1 -548 186 133 657 96 0 113 chr6 101903965 101904080 -87375474 - AluSx SINE Alu -210 103 2 1091 111 0 7 chr6 101904081 101904234 -87375320 + MER50 LTR ERV1 560 711 -23 * 3595 129 5 18 chr6 101904233 101904799 -87374755 - MER41B LTR ERV1 -73 562 4 1241 220 122 95 chr6 101904965 101905451 -87374103 + LTR48B LTR ERV1 4 512 -132 4531 107 37 3 chr6 101905451 101906042 -87373512 + LTR9 LTR ERV1 2 612 0 1241 220 122 95 chr6 101906042 101906179 -87373375 + LTR48B LTR ERV1 512 644 0 509 165 121 0 chr6 101906181 101906272 -87373282 + LTR9-int LTR ERV1 1 102 -6229 1193 189 0 0 chr6 101906322 101906523 -87373031 + AluJb SINE Alu 85 285 -27 442 152 0 43 chr6 101906539 101906631 -87372923 + MER57A-int LTR ERV1 7450 7537 0 2409 158 7 27 chr6 101906647 101907058 -87372496 + MER57A LTR ERV1 1 403 0 233 252 61 53 chr6 101907684 101907815 -87371739 + MER65B LTR ERV1 325 456 -75 2084 166 43 45 chr6 101907881 101908043 -87371511 + LTR54 LTR ERV1 67 228 -282 1624 181 4 0 chr6 101908043 101908313 -87371241 - AluJb SINE Alu -26 286 16 2084 166 43 45 chr6 101908313 101908595 -87370959 + LTR54 LTR ERV1 228 510 0 22 0 0 0 chr6 101908600 101908622 -87370932 + AT_rich Low_complexity Low_complexity 1 22 0 1893 154 0 0 chr6 101908786 101909066 -87370488 + AluSx SINE Alu 1 280 -32 368 265 25 56 chr6 101909198 101909360 -87370194 + L2 LINE L2 2924 3080 -192 1999 125 62 0 chr6 101909552 101909840 -87369714 + AluSq SINE Alu 1 306 -7 1531 199 3 44 chr6 101909893 101910032 -87369522 + AluJo SINE Alu 8 151 -161 2145 137 0 6 chr6 101910032 101910346 -87369208 + AluSx SINE Alu 1 312 0 1531 199 3 44 chr6 101910346 101910523 -87369031 + AluJo SINE Alu 151 311 -1 3171 166 20 56 chr6 101910534 101910858 -87368696 - L1P LINE L1 -800 5346 5012 276 91 0 0 chr6 101910858 101910902 -87368652 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3171 166 20 56 chr6 101910902 101910923 -87368631 - L1P LINE L1 -1134 5012 4992 1956 142 0 0 chr6 101910923 101911198 -87368356 - AluSx SINE Alu -37 275 1 3171 166 20 56 chr6 101911198 101911560 -87367994 - L1P LINE L1 -1154 4992 4664 4245 115 25 8 chr6 101911560 101912201 -87367353 + L1PA15 LINE L1 5362 6013 -152 973 79 0 0 chr6 101912202 101912329 -87367225 + AluSp/q SINE Alu 185 311 -2 6905 118 25 18 chr6 101912330 101913662 -87365892 + L1MA2 LINE L1 4955 6297 -7 924 141 0 0 chr6 101913687 101913829 -87365725 + L1PA15 LINE L1 6023 6164 -1 333 0 0 0 chr6 101914021 101914058 -87365496 + (CA)n Simple_repeat Simple_repeat 1 37 0 294 239 123 7 chr6 101914446 101914584 -87364970 + L2 LINE L2 3160 3313 0 2163 136 0 7 chr6 101914587 101914896 -87364658 + AluSx SINE Alu 1 307 -5 1951 164 0 0 chr6 101915083 101915376 -87364178 - AluJb SINE Alu -19 293 1 270 312 52 52 chr6 101915557 101915730 -87363824 + MLT1L LTR MaLR 29 201 -414 487 169 0 5 chr6 101915751 101915960 -87363594 + AluJ SINE Alu 2 306 0 236 200 15 31 chr6 101916348 101916413 -87363141 + MLT1L LTR MaLR 545 608 -7 189 274 123 28 chr6 101916694 101916800 -87362754 - L2 LINE L2 -200 3072 2957 255 157 118 0 chr6 101916846 101916897 -87362657 + MIR SINE MIR 117 173 -89 2290 112 3 0 chr6 101916999 101917302 -87362252 - AluSp SINE Alu -9 304 1 1954 149 3 0 chr6 101919285 101919586 -87359968 - AluJb SINE Alu -10 302 1 636 229 160 97 chr6 101919616 101920074 -87359480 - MLT1H1 LTR MaLR -8 541 17 376 302 104 16 chr6 101920106 101920298 -87359256 - L2 LINE L2 -260 3012 2804 523 233 0 42 chr6 101920408 101920528 -87359026 - MLT1K LTR MaLR -62 526 412 2083 121 0 24 chr6 101920533 101920694 -87358860 - AluSx SINE Alu -21 291 139 2317 81 7 7 chr6 101920694 101920989 -87358565 - AluSc SINE Alu -14 295 1 2083 121 0 24 chr6 101920989 101921125 -87358429 - AluSx SINE Alu -173 139 1 1741 152 48 3 chr6 101921141 101921430 -87358124 - AluJo SINE Alu -9 303 2 489 280 88 60 chr6 101921666 101921829 -87357725 + MIR SINE MIR 2 176 -86 1863 150 3 10 chr6 101921829 101922123 -87357431 - AluJb SINE Alu -20 292 1 489 280 88 60 chr6 101922123 101922209 -87357345 + MIR SINE MIR 176 258 -4 2299 157 109 11 chr6 101922260 101922720 -87356834 + MLT1D LTR MaLR 1 505 0 30 27 0 0 chr6 101922808 101922845 -87356709 + AT_rich Low_complexity Low_complexity 1 37 0 603 73 0 42 chr6 101922868 101922964 -87356590 - AluJb SINE Alu -3 309 218 1571 142 0 0 chr6 101923009 101923228 -87356326 - AluJb SINE Alu -93 219 1 1951 158 7 3 chr6 101923279 101923582 -87355972 - AluJb SINE Alu -4 308 5 2171 118 37 0 chr6 101924448 101924744 -87354810 + AluSq SINE Alu 1 307 -6 22 99 0 0 chr6 101926015 101926086 -87353468 + AT_rich Low_complexity Low_complexity 1 71 0 2983 130 44 113 chr6 101926235 101926658 -87352896 + L1MB7 LINE L1 5539 5899 -285 650 209 0 15 chr6 101926658 101926792 -87352762 + FLAM_C SINE Alu 2 133 0 2983 130 44 113 chr6 101926792 101927051 -87352503 + L1MB7 LINE L1 5899 6174 -10 2097 124 0 19 chr6 101927143 101927450 -87352104 + AluSx SINE Alu 1 301 -11 798 294 56 41 chr6 101927604 101927737 -87351817 - L1MC4a LINE L1 -215 5969 5839 2396 100 0 0 chr6 101927737 101928038 -87351516 - AluSg SINE Alu -9 301 1 2372 80 0 7 chr6 101928038 101928338 -87351216 - AluSq SINE Alu -15 298 1 798 294 56 41 chr6 101928338 101928654 -87350900 - L1MC4a LINE L1 -344 5840 5511 2347 102 7 0 chr6 101928730 101929024 -87350530 - AluSx SINE Alu -16 296 1 180 0 0 0 chr6 101929283 101929303 -87350251 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2319 69 7 7 chr6 101929775 101930063 -87349491 + AluSc SINE Alu 2 289 -20 738 162 141 0 chr6 101930143 101930285 -87349269 + AluSg/x SINE Alu 136 297 -13 335 301 57 60 chr6 101930298 101930597 -87348957 - L2 LINE L2 -587 2727 2430 206 129 0 0 chr6 101931159 101931190 -87348364 - MIR SINE MIR -171 91 61 488 172 45 52 chr6 101932186 101932320 -87347234 - L1MB8 LINE L1 0 6178 6046 5209 160 26 31 chr6 101932382 101932483 -87347071 + L1M1 LINE L1 15 115 -7450 2171 80 0 4 chr6 101932483 101932746 -87346808 + AluY SINE Alu 1 262 -49 5209 160 26 31 chr6 101932746 101933565 -87345989 + L1M1 LINE L1 115 930 -6635 2905 79 5 0 chr6 101933562 101933941 -87345613 - THE1C-int LTR MaLR -1199 381 1 * 2445 102 41 8 chr6 101933941 101934304 -87345250 - THE1C LTR MaLR 0 375 1 1134 249 189 11 chr6 101934304 101934753 -87344801 + L2 LINE L2 1151 1679 -1635 719 98 0 0 chr6 101934767 101934869 -87344685 - AluY SINE Alu -3 308 207 1747 257 29 83 chr6 101934969 101935145 -87344409 + L2 LINE L2 2208 2392 -921 1581 174 102 72 chr6 101935145 101935575 -87343979 - LTR47B LTR ERVL 0 443 1 1747 257 29 83 chr6 101935575 101935884 -87343670 + L2 LINE L2 2392 2716 -597 180 0 0 0 chr6 101935884 101935904 -87343650 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1747 257 29 83 chr6 101935904 101935923 -87343631 + L2 LINE L2 2716 2734 -579 1524 168 0 39 chr6 101935923 101936208 -87343346 - AluJo SINE Alu -38 274 1 1747 257 29 83 chr6 101936208 101936381 -87343173 + L2 LINE L2 2734 2915 -398 2222 102 7 0 chr6 101936381 101936675 -87342879 - AluSx SINE Alu -16 296 1 1747 257 29 83 chr6 101936675 101936997 -87342557 + L2 LINE L2 2915 3136 -177 2019 128 16 16 chr6 101936997 101937302 -87342252 + AluJb SINE Alu 1 305 -7 1747 257 29 83 chr6 101937302 101937435 -87342119 + L2 LINE L2 3136 3275 -38 855 233 295 61 chr6 101937430 101937874 -87341680 - L2 LINE L2 -30 3283 2944 * 2060 44 0 8 chr6 101937874 101938126 -87341428 + L1PA5 LINE L1 5901 6150 -4 855 233 295 61 chr6 101938126 101938311 -87341243 - L2 LINE L2 -369 2944 2804 258 32 0 0 chr6 101938311 101938342 -87341212 + (TA)n Simple_repeat Simple_repeat 2 32 0 855 233 295 61 chr6 101938342 101938818 -87340736 - L2 LINE L2 -509 2804 1833 288 273 13 0 chr6 101938847 101938924 -87340630 + MIR SINE MIR 75 152 -110 294 186 0 0 chr6 101938925 101938968 -87340586 - LTR8A LTR ERV1 0 727 685 1597 175 8 0 chr6 101938992 101939255 -87340299 + AluJo SINE Alu 42 306 -6 1667 153 60 7 chr6 101939340 101939622 -87339932 - AluJo SINE Alu -15 297 1 2211 97 50 0 chr6 101939647 101939945 -87339609 + AluSp SINE Alu 1 313 0 2264 119 0 3 chr6 101939998 101940310 -87339244 - AluSx SINE Alu -1 311 1 565 173 10 0 chr6 101940343 101940447 -87339107 - FLAM_A SINE Alu 0 142 38 2260 108 7 0 chr6 101941090 101941386 -87338168 + AluSx SINE Alu 1 298 -14 2399 93 6 6 chr6 101941790 101942101 -87337453 - AluSx SINE Alu -1 311 1 1191 149 0 6 chr6 101942339 101942520 -87337034 + AluJb SINE Alu 133 312 0 731 125 52 59 chr6 101942529 101942665 -87336889 - AluJo SINE Alu -176 136 2 27 0 0 0 chr6 101942668 101942695 -87336859 + AT_rich Low_complexity Low_complexity 1 27 0 389 328 53 11 chr6 101942733 101942922 -87336632 - MIR SINE MIR -63 199 3 209 97 0 0 chr6 101943627 101943658 -87335896 + L2 LINE L2 3283 3313 0 1921 153 7 3 chr6 101943776 101944064 -87335490 + AluJo SINE Alu 1 289 -23 734 176 0 22 chr6 101945288 101945424 -87334130 - FLAM_C SINE Alu 0 143 11 374 171 136 0 chr6 101945480 101945568 -87333986 + L2 LINE L2 3214 3313 0 574 175 71 8 chr6 101945783 101945909 -87333645 - Charlie1 DNA MER1_type -1 2760 2627 * 616 147 225 0 chr6 101945905 101946034 -87333520 - Charlie1 DNA MER1_type -261 2500 2343 741 161 0 0 chr6 101946335 101946453 -87333101 + FLAM_C SINE Alu 19 136 -7 228 250 11 98 chr6 101947227 101947319 -87332235 + L2 LINE L2 3189 3272 0 2093 112 3 24 chr6 101947335 101947516 -87332038 - AluSx SINE Alu -22 290 116 1901 141 58 30 chr6 101947516 101947879 -87331675 - THE1C LTR MaLR 0 375 3 2093 112 3 24 chr6 101947879 101947993 -87331561 - AluSx SINE Alu -196 116 1 2033 130 0 31 chr6 101948435 101948757 -87330797 + AluSx SINE Alu 1 312 0 2217 121 0 0 chr6 101949045 101949342 -87330212 + AluSx SINE Alu 1 297 -15 5129 140 20 19 chr6 101949357 101949385 -87330169 - L1MB7 LINE L1 0 6184 6158 2201 98 9 52 chr6 101949385 101949711 -87329843 - AluSq SINE Alu -1 312 1 5129 140 20 19 chr6 101949711 101950663 -87328891 - L1MB7 LINE L1 -26 6158 5208 2159 135 0 0 chr6 101950666 101950963 -87328591 - AluSx SINE Alu -15 297 1 2406 110 0 0 chr6 101951004 101951313 -87328241 - AluSx SINE Alu -3 309 1 366 167 0 42 chr6 101951758 101951830 -87327724 - AluJ/FRAM SINE Alu -3 299 231 469 158 42 0 chr6 101952017 101952112 -87327442 + L1M4 LINE L1 5237 5335 -811 1971 159 38 9 chr6 101952112 101952457 -87327097 - MLT1A1 LTR MaLR 0 365 11 27 0 0 0 chr6 101952531 101952558 -87326996 + AT_rich Low_complexity Low_complexity 1 27 0 874 151 0 0 chr6 101952573 101952699 -87326855 + AluJb SINE Alu 174 299 -13 247 191 60 119 chr6 101952714 101952882 -87326672 - HAL1 LINE L1 -39 2468 2311 261 0 0 0 chr6 101952882 101952911 -87326643 + (CA)n Simple_repeat Simple_repeat 2 30 0 234 0 0 0 chr6 101952910 101952936 -87326618 + (TA)n Simple_repeat Simple_repeat 2 27 0 * 2265 103 7 0 chr6 101952936 101953227 -87326327 - AluSx SINE Alu -19 293 1 1060 98 0 0 chr6 101953231 101953364 -87326190 - AluSq/x SINE Alu -179 133 1 2159 252 75 48 chr6 101953366 101953634 -87325920 - HAL1 LINE L1 -186 2321 2062 534 292 50 81 chr6 101953634 101954070 -87325484 + MER34 LTR ERV1 1 418 -124 2125 123 10 0 chr6 101954070 101954363 -87325191 + AluSx SINE Alu 1 296 -16 534 292 50 81 chr6 101954363 101954485 -87325069 + MER34 LTR ERV1 418 542 0 2159 252 75 48 chr6 101954485 101955069 -87324485 - HAL1 LINE L1 -445 2062 1446 641 213 7 33 chr6 101955076 101955226 -87324328 + AluJo SINE Alu 2 147 -165 1884 131 55 0 chr6 101956329 101956604 -87322950 - AluSx SINE Alu -22 290 1 589 183 0 17 chr6 101956616 101956736 -87322818 - FAM SINE Alu 0 185 68 1723 154 55 0 chr6 101956766 101957038 -87322516 + AluJo SINE Alu 6 292 -20 1624 202 3 10 chr6 101957042 101957174 -87322380 + AluJo SINE Alu 3 134 -178 2240 112 0 16 chr6 101957174 101957487 -87322067 + AluSx SINE Alu 1 308 -4 1020 188 4 51 chr6 101957427 101957661 -87321893 + AluJo SINE Alu 85 307 -5 1624 202 3 10 chr6 101957487 101957661 -87321893 + AluJo SINE Alu 134 307 -5 1481 173 63 7 chr6 101957865 101958149 -87321405 - AluJb SINE Alu -12 300 1 2087 125 0 25 chr6 101958232 101958552 -87321002 + AluSx SINE Alu 1 312 0 720 149 8 8 chr6 101958813 101958934 -87320620 + Tigger7 DNA MER2_type 1 121 -2366 32 0 0 0 chr6 101958934 101958966 -87320588 + AT_rich Low_complexity Low_complexity 1 32 0 267 31 0 0 chr6 101958966 101958998 -87320556 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 1988 137 0 3 chr6 101958998 101959298 -87320256 - AluSx SINE Alu -13 299 1 1400 92 0 0 chr6 101959333 101959517 -87320037 - U2 snRNA snRNA -4 184 1 799 252 70 30 chr6 101959544 101959873 -87319681 - HAL1 LINE L1 -1099 1408 1067 435 168 47 0 chr6 101959873 101959980 -87319574 + CT-rich Low_complexity Low_complexity 2 113 0 1830 156 10 3 chr6 101960004 101960312 -87319242 - AluJo SINE Alu -2 310 1 2715 65 0 0 chr6 101960332 101960670 -87318884 - L1PA5 LINE L1 -1 6153 5816 3367 115 110 146 chr6 101960670 101962126 -87317428 + pTR5 LTR ERV1 744 2436 -2 1982 26 0 0 chr6 101962131 101962359 -87317195 - L1P2 LINE L1 -334 5820 5593 314 122 128 223 chr6 101962380 101962528 -87317026 - MLT1H LTR MaLR -8 541 408 251 235 66 22 chr6 101962567 101962703 -87316851 - HAL1 LINE L1 -1467 1040 899 1071 161 86 5 chr6 101962803 101962989 -87316565 + LTR29 LTR ERV1 1 201 -421 810 173 119 26 chr6 101963023 101963282 -87316272 + LTR49 LTR ERV1 313 595 0 1246 158 73 4 chr6 101963345 101963579 -87315975 - AluJb SINE Alu -7 305 56 1864 139 17 0 chr6 101964038 101964325 -87315229 + AluSx SINE Alu 2 293 -19 1623 168 10 26 chr6 101965010 101965314 -87314240 - AluJb SINE Alu -13 299 1 1630 182 7 3 chr6 101965354 101965662 -87313892 + AluJb SINE Alu 1 309 -3 586 194 28 0 chr6 101965662 101965806 -87313748 + GA-rich Low_complexity Low_complexity 1 148 0 223 143 0 0 chr6 101965807 101965842 -87313712 + (GA)n Simple_repeat Simple_repeat 2 36 0 1975 133 0 3 chr6 101965867 101966161 -87313393 + AluSx SINE Alu 4 296 -16 2023 120 0 7 chr6 101966165 101966456 -87313098 + AluSx SINE Alu 1 289 -23 198 0 0 0 chr6 101966459 101966481 -87313073 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 417 153 0 0 chr6 101966670 101966742 -87312812 + GA-rich Low_complexity Low_complexity 1 72 0 414 191 0 0 chr6 101967492 101967560 -87311994 - AluS SINE Alu -11 298 231 948 78 23 0 chr6 102017919 102018047 -87261507 - FLAM_C SINE Alu -12 131 1 635 158 103 7 chr6 102018118 102018264 -87261290 - L2 LINE L2 -3 3310 3151 182 314 151 58 chr6 102018588 102018932 -87260622 - L2 LINE L2 -44 3228 2853 771 279 77 8 chr6 102018980 102019227 -87260327 - MLT1C LTR MaLR 0 467 204 198 71 0 0 chr6 102019228 102019256 -87260298 + (TC)n Simple_repeat Simple_repeat 1 28 0 732 136 73 0 chr6 102019256 102019366 -87260188 - FLAM_C SINE Alu -16 127 10 1557 123 44 23 chr6 102019366 102019670 -87259884 - THE1B LTR MaLR -2 353 1 581 222 105 29 chr6 102019694 102019865 -87259689 - MLT1C LTR MaLR -321 184 1 1482 177 10 51 chr6 102020013 102020324 -87259230 + AluJo SINE Alu 1 298 -14 21 36 0 0 chr6 102021229 102021257 -87258297 + AT_rich Low_complexity Low_complexity 1 28 0 192 254 0 73 chr6 102022610 102022665 -87256889 - L2 LINE L2 -18 3254 3204 328 153 126 27 chr6 102022706 102022817 -87256737 + MER113 DNA MER1_type? 1 122 -399 1824 167 10 7 chr6 102023039 102023339 -87256215 + AluSx SINE Alu 1 301 -11 1710 176 17 7 chr6 102023358 102023659 -87255895 + AluJb SINE Alu 1 304 -8 543 206 84 8 chr6 102023668 102023799 -87255755 + MER113 DNA MER1_type? 240 380 -141 458 216 11 23 chr6 102023812 102023900 -87255654 + AluJo SINE Alu 85 171 -141 1722 182 7 10 chr6 102024337 102024644 -87254910 - AluJo SINE Alu -6 306 1 226 336 52 0 chr6 102024655 102024771 -87254783 - L2 LINE L2 -575 2739 2618 2542 48 0 0 chr6 102024808 102025099 -87254455 + AluY SINE Alu 3 293 -18 2243 106 0 7 chr6 102025107 102025408 -87254146 + AluSq SINE Alu 1 299 -14 2001 142 3 0 chr6 102025413 102025708 -87253846 + AluSq SINE Alu 1 296 -17 1804 169 3 0 chr6 102025722 102026012 -87253542 + AluJb SINE Alu 1 291 -21 2193 91 45 0 chr6 102026012 102026299 -87253255 + AluSg1 SINE Alu 1 300 -9 854 208 28 63 chr6 102026315 102026739 -87252815 + L1MC5 LINE L1 6636 7100 -861 180 0 0 0 chr6 102026739 102026759 -87252795 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 854 208 28 63 chr6 102026759 102026940 -87252614 + L1MC5 LINE L1 7100 7286 -675 2109 125 7 0 chr6 102026942 102027237 -87252317 - AluSx SINE Alu -15 297 1 601 186 10 0 chr6 102027274 102027321 -87252233 + MER3 DNA MER1_type 1 48 -161 366 137 192 0 chr6 102027321 102027394 -87252160 - MER3 DNA MER1_type 0 209 123 3672 55 34 19 chr6 102027399 102028462 -87251092 + MER11A LTR ERVK 1 1266 0 308 167 0 76 chr6 102028462 102028516 -87251038 - MER3 DNA MER1_type -96 113 65 374 250 47 14 chr6 102028523 102028671 -87250883 + L1MC5 LINE L1 7342 7494 -467 383 188 167 21 chr6 102028870 102028966 -87250588 + L1ME3 LINE L1 5781 5890 -272 786 169 7 42 chr6 102028968 102029110 -87250444 + FRAM SINE Alu 22 158 -18 360 125 0 0 chr6 102029120 102029176 -87250378 + MSTC LTR MaLR 373 428 0 1654 158 20 20 chr6 102029198 102029501 -87250053 - AluJo SINE Alu -9 303 1 824 185 0 8 chr6 102029514 102029644 -87249910 - FLAM_C SINE Alu -14 129 1 1661 181 0 46 chr6 102029680 102030006 -87249548 - AluJb SINE Alu -1 311 1 1018 231 39 29 chr6 102030012 102030236 -87249318 - L1ME2 LINE L1 -1 6163 5934 871 168 0 15 chr6 102030236 102030367 -87249187 - FLAM_C SINE Alu -4 129 1 1018 231 39 29 chr6 102030367 102030423 -87249131 - L1ME2 LINE L1 -230 5934 5880 1006 170 6 35 chr6 102030438 102030609 -87248945 - FRAM SINE Alu 0 166 1 2150 122 48 31 chr6 102030610 102030962 -87248592 - MSTC LTR MaLR -70 358 1 779 175 0 17 chr6 102031013 102031133 -87248421 + FLAM_C SINE Alu 1 118 -15 27 0 0 0 chr6 102031133 102031160 -87248394 + AT_rich Low_complexity Low_complexity 1 27 0 2205 92 28 0 chr6 102032176 102032460 -87247094 + AluSx SINE Alu 5 296 -16 24 32 0 0 chr6 102032494 102032525 -87247029 + AT_rich Low_complexity Low_complexity 1 31 0 1737 151 17 44 chr6 102032549 102032872 -87246682 + AluJo SINE Alu 1 312 0 24 0 0 0 chr6 102032926 102032950 -87246604 + AT_rich Low_complexity Low_complexity 1 24 0 256 366 60 0 chr6 102033023 102033157 -87246397 + LTR16C LTR ERVL 258 399 -92 788 253 88 90 chr6 102033165 102033564 -87245990 + MLT1J LTR MaLR 105 502 -9 2417 179 65 4 chr6 102033581 102034057 -87245497 - LTR22 LTR ERVK -4 505 1 328 247 65 0 chr6 102034236 102034329 -87245225 - MER69 DNA AcHobo 0 2526 2428 1159 237 155 20 chr6 102034331 102034732 -87244822 - LTR16A1 LTR ERVL -2 455 1 1721 164 83 30 chr6 102034812 102035185 -87244369 - MER69 DNA AcHobo -257 2269 1877 2338 237 36 11 chr6 102035245 102035798 -87243756 - MER69 DNA AcHobo -439 787 221 2521 48 0 3 chr6 102036004 102036297 -87243257 + AluY SINE Alu 1 292 -19 883 163 8 0 chr6 102036850 102036979 -87242575 + FLAM_C SINE Alu 1 130 -3 24 0 0 0 chr6 102037280 102037304 -87242250 + AT_rich Low_complexity Low_complexity 1 24 0 771 152 7 76 chr6 102037688 102037833 -87241721 - AluJo SINE Alu -176 136 2 1628 135 0 56 chr6 102038212 102038511 -87241043 + AluSx SINE Alu 36 319 0 1248 192 76 18 chr6 102038707 102038983 -87240571 - AluJo SINE Alu -20 292 1 784 119 24 48 chr6 102038986 102039112 -87240442 - AluJo/FLAM SINE Alu -179 133 11 337 184 145 0 chr6 102039112 102039188 -87240366 - MLT1B LTR MaLR -262 128 42 831 184 7 0 chr6 102039191 102039327 -87240227 + AluJb SINE Alu 157 293 -19 964 144 0 69 chr6 102039673 102039846 -87239708 - AluJo SINE Alu -141 171 11 2276 110 0 16 chr6 102040957 102041274 -87238280 - AluSx SINE Alu 0 312 1 1627 174 18 3 chr6 102041416 102041586 -87237968 - AluJo SINE Alu -16 296 119 207 0 0 0 chr6 102041586 102041609 -87237945 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1627 174 18 3 chr6 102041609 102041720 -87237834 - AluJo SINE Alu -193 119 11 2390 52 0 3 chr6 102042259 102042566 -87236988 - AluY SINE Alu 0 306 1 719 224 147 35 chr6 102044075 102044307 -87235247 + MIR SINE MIR 2 259 -3 28 0 0 0 chr6 102045581 102045609 -87233945 + GC_rich Low_complexity Low_complexity 1 28 0 592 94 0 24 chr6 102047258 102047343 -87232211 + AluSq/x SINE Alu 51 133 -180 1901 113 21 3 chr6 102047451 102047733 -87231821 - AluSx SINE Alu -25 287 1 434 259 46 58 chr6 102048142 102048316 -87231238 + MIR SINE MIR 27 198 -64 2287 123 0 0 chr6 102049986 102050294 -87229260 - AluSx SINE Alu -4 308 1 1142 153 0 0 chr6 102050326 102050496 -87229058 + AluSp SINE Alu 1 170 -143 26 30 0 0 chr6 102051362 102051395 -87228159 + AT_rich Low_complexity Low_complexity 1 33 0 2017 135 7 14 chr6 102051727 102052023 -87227531 - AluSx SINE Alu -18 294 1 22 0 0 0 chr6 102052035 102052057 -87227497 + AT_rich Low_complexity Low_complexity 1 22 0 1915 124 0 67 chr6 102053380 102053711 -87225843 - AluJb SINE Alu -3 309 1 1089 156 0 17 chr6 102053821 102054000 -87225554 - AluSg/x SINE Alu -3 309 134 2318 100 0 3 chr6 102054000 102054300 -87225254 - AluSg SINE Alu -5 305 7 405 304 44 0 chr6 102054461 102054596 -87224958 + MIR SINE MIR 77 217 -45 24 0 0 0 chr6 102055076 102055100 -87224454 + AT_rich Low_complexity Low_complexity 1 24 0 295 210 74 25 chr6 102055123 102055204 -87224350 - Charlie7 DNA MER1_type -1923 689 605 23 0 0 0 chr6 102055204 102055227 -87224327 + AT_rich Low_complexity Low_complexity 1 23 0 852 136 0 0 chr6 102055228 102055353 -87224201 - FLAM_C SINE Alu -18 125 1 469 180 351 5 chr6 102055353 102055575 -87223979 - Charlie7 DNA MER1_type -1995 617 319 3255 58 49 7 chr6 102055678 102056129 -87223425 + L1PBa LINE L1 2166 2635 -4228 342 246 212 0 chr6 102056129 102056247 -87223307 - Charlie7 DNA MER1_type -2357 255 113 229 320 10 52 chr6 102056267 102056342 -87223212 + MER5A DNA MER1_type 1 73 -116 2221 107 3 10 chr6 102056342 102056642 -87222912 + AluSx SINE Alu 1 298 -14 229 320 10 52 chr6 102056642 102056663 -87222891 + MER5A DNA MER1_type 73 93 -96 439 337 166 35 chr6 102057626 102058282 -87221272 - L2 LINE L2 -887 2427 1686 209 255 25 127 chr6 102058687 102058844 -87220710 + L2 LINE L2 3164 3304 -9 379 275 160 30 chr6 102058878 102059066 -87220488 + MIR SINE MIR 55 262 0 248 311 27 27 chr6 102059095 102059169 -87220385 + L2 LINE L2 3235 3308 -5 241 313 236 10 chr6 102059408 102059603 -87219951 - L2 LINE L2 -215 3057 2819 281 281 50 34 chr6 102059604 102059756 -87219798 - L2 LINE L2 -637 2677 2523 * 537 312 114 30 chr6 102059737 102060166 -87219388 - L2 LINE L2 -905 2409 1945 2344 107 0 0 chr6 102061387 102061686 -87217868 - AluSx SINE Alu -13 299 1 885 167 123 133 chr6 102061964 102062264 -87217290 - AluJo SINE Alu -5 297 1 261 83 0 0 chr6 102063542 102063578 -87215976 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 1291 161 139 22 chr6 102064603 102064876 -87214678 - AluJo SINE Alu -7 305 1 2852 10 0 0 chr6 102064931 102065233 -87214321 + AluY SINE Alu 1 302 -9 2053 101 25 4 chr6 102065731 102066008 -87213546 + AluSq SINE Alu 1 283 -30 201 39 0 0 chr6 102066008 102066034 -87213520 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 2292 99 17 0 chr6 102066318 102066612 -87212942 + AluSx SINE Alu 1 299 -13 1824 170 0 10 chr6 102066737 102067048 -87212506 - AluJo SINE Alu -4 308 1 23 54 0 0 chr6 102067150 102067187 -87212367 + AT_rich Low_complexity Low_complexity 1 37 0 2513 164 40 116 chr6 102067213 102067961 -87211593 - LTR8 LTR ERV1 0 691 1 1558 153 39 44 chr6 102067984 102068344 -87211210 - L1PA16 LINE L1 -14 6152 5795 1896 114 0 4 chr6 102069074 102069328 -87210226 + AluSx SINE Alu 2 254 -58 244 188 0 87 chr6 102069624 102069693 -87209861 + L2 LINE L2 3251 3313 0 473 229 207 0 chr6 102069761 102069901 -87209653 - MER5A DNA MER1_type -12 177 9 2342 93 7 3 chr6 102069949 102070250 -87209304 + AluSx SINE Alu 1 302 -10 2342 95 0 22 chr6 102070717 102071034 -87208520 + AluSq SINE Alu 1 310 -3 1190 142 120 64 chr6 102071485 102071782 -87207772 - AluJo SINE Alu 0 313 2 2087 122 0 20 chr6 102072116 102072412 -87207142 - AluJb SINE Alu -22 290 1 288 179 0 15 chr6 102073210 102073277 -87206277 + MER5C DNA MER1_type 259 324 0 2187 117 0 26 chr6 102073493 102073801 -87205753 + AluSx SINE Alu 1 300 -12 2137 104 0 24 chr6 102073801 102074099 -87205455 + AluSq SINE Alu 1 291 -22 452 159 0 68 chr6 102074527 102074615 -87204939 + FLAM SINE Alu 45 126 -17 22 0 0 0 chr6 102074615 102074637 -87204917 + AT_rich Low_complexity Low_complexity 1 22 0 2224 145 42 21 chr6 102075141 102075521 -87204033 + MLT1B LTR MaLR 1 388 -2 1840 179 0 3 chr6 102075757 102076065 -87203489 + AluJb SINE Alu 1 307 -5 2248 107 0 28 chr6 102077994 102078313 -87201241 - AluSq SINE Alu -3 310 1 229 258 11 101 chr6 102078920 102079009 -87200545 - MIR SINE MIR -55 207 127 246 294 124 20 chr6 102079313 102079466 -87200088 + L2 LINE L2 2890 3058 -214 455 297 22 7 chr6 102080196 102080334 -87199220 - MER5A DNA MER1_type -1 188 49 235 268 32 96 chr6 102080226 102080383 -87199171 + MER5A DNA MER1_type 43 189 0 * 1619 162 49 14 chr6 102081099 102081383 -87198171 - AluJo SINE Alu -16 296 3 422 216 0 0 chr6 102081413 102081501 -87198053 + MER5A DNA MER1_type 18 105 -84 992 150 6 12 chr6 102081523 102081683 -87197871 + FRAM SINE Alu 1 159 -7 183 129 0 0 chr6 102081939 102081970 -87197584 + (A)n Simple_repeat Simple_repeat 1 31 0 3001 98 2 42 chr6 102082363 102082750 -87196804 + L1PB3 LINE L1 5706 6074 -80 2318 93 0 26 chr6 102082750 102083060 -87196494 + AluSx SINE Alu 1 302 -10 3001 98 2 42 chr6 102083060 102083119 -87196435 + L1PB3 LINE L1 6074 6134 -20 2054 141 26 0 chr6 102083666 102083970 -87195584 - AluSx SINE Alu 0 312 1 406 165 13 25 chr6 102084521 102084600 -87194954 - MER116 DNA Mariner 0 80 3 1637 188 48 41 chr6 102085005 102085399 -87194155 + MLT2C1 LTR ERVL 1 397 0 226 0 59 0 chr6 102085999 102086033 -87193521 + (TG)n Simple_repeat Simple_repeat 2 37 0 333 138 75 25 chr6 102086033 102086113 -87193441 - L1MB4 LINE L1 -13 6167 6084 21 0 0 0 chr6 102086127 102086148 -87193406 + AT_rich Low_complexity Low_complexity 1 21 0 4444 162 33 20 chr6 102086338 102086810 -87192744 - L1MB3 LINE L1 -108 6075 5611 1971 134 0 33 chr6 102086810 102087116 -87192438 - AluJo SINE Alu -16 296 1 4444 162 33 20 chr6 102087116 102087611 -87191943 - L1MB3 LINE L1 -572 5611 5097 264 30 0 0 chr6 102087831 102087864 -87191690 + (TG)n Simple_repeat Simple_repeat 2 34 0 4270 8 0 0 chr6 102087997 102088467 -87191087 + L1PA2 LINE L1 5686 6155 0 1917 109 69 4 chr6 102088576 102088852 -87190702 + AluSg SINE Alu 1 294 -16 1231 114 0 0 chr6 102090690 102090856 -87188698 + AluSg/x SINE Alu 139 304 -8 2175 121 16 0 chr6 102091345 102091652 -87187902 - AluSx SINE Alu 0 312 1 187 330 99 33 chr6 102091892 102091983 -87187571 + L2 LINE L2 3136 3232 -40 545 236 0 0 chr6 102092360 102092466 -87187088 - MER63C DNA MER1_type 0 931 826 6722 176 54 14 chr6 102092499 102093972 -87185582 + L1M3f LINE L1 5 1545 -4257 2163 121 3 10 chr6 102093972 102094269 -87185285 + AluSx SINE Alu 1 295 -17 6722 176 54 14 chr6 102094269 102094471 -87185083 + L1M3f LINE L1 1545 1737 -4065 2736 208 110 7 chr6 102094472 102095173 -87184381 - MER63C DNA MER1_type -137 793 1 1776 181 10 19 chr6 102095282 102095705 -87183849 + AluJb SINE Alu 1 420 0 1008 231 43 83 chr6 102097341 102097692 -87181862 + LTR16C LTR ERVL 152 488 -3 219 279 190 38 chr6 102097921 102098079 -87181475 + MIR SINE MIR 13 194 -68 2145 128 0 41 chr6 102099035 102099355 -87180199 - AluSx SINE Alu -5 307 1 504 150 71 100 chr6 102100429 102100458 -87179096 - MER5B DNA MER1_type -36 142 114 2513 64 0 0 chr6 102100458 102100756 -87178798 + AluY SINE Alu 1 298 -13 504 150 71 100 chr6 102100756 102100866 -87178688 - MER5B DNA MER1_type -64 114 7 2066 121 7 3 chr6 102101236 102101553 -87178001 - AluSx SINE Alu 0 318 1 1611 155 12 59 chr6 102101652 102101974 -87177580 - AluJo SINE Alu -5 307 1 478 258 55 49 chr6 102102816 102102979 -87176575 + LTR33 LTR ERVL 86 249 -272 423 295 22 11 chr6 102103030 102103213 -87176341 + LTR33 LTR ERVL 337 521 0 190 290 16 0 chr6 102103402 102103464 -87176090 + L2 LINE L2 3250 3312 -1 723 244 86 10 chr6 102103995 102104204 -87175350 - MIR SINE MIR -8 254 30 187 260 20 0 chr6 102104311 102104361 -87175193 + L2 LINE L2 3257 3307 -6 220 252 72 86 chr6 102105334 102105473 -87174081 + L2 LINE L2 2923 3059 -213 1704 154 30 40 chr6 102105579 102105878 -87173676 - AluJo SINE Alu -16 296 1 1998 146 0 16 chr6 102106146 102106454 -87173100 - AluJb SINE Alu -8 304 2 749 164 72 0 chr6 102106623 102106775 -87172779 + MER5B DNA MER1_type 9 171 -7 251 208 183 29 chr6 102106857 102106995 -87172559 + MIR3 SINE MIR 35 194 -14 1852 201 17 29 chr6 102107365 102107784 -87171770 + MLT2D LTR ERVL 1 414 0 509 244 79 24 chr6 102108692 102108856 -87170698 + MIR SINE MIR 20 192 -70 349 208 39 0 chr6 102108862 102108939 -87170615 + MER116 DNA Mariner 1 80 0 323 266 130 13 chr6 102108982 102109136 -87170418 + MIR3 SINE MIR 22 193 -15 2067 154 3 0 chr6 102109143 102109454 -87170100 - AluJb SINE Alu 0 312 1 589 235 22 0 chr6 102109501 102109637 -87169917 + L2 LINE L2 3134 3272 0 262 314 7 128 chr6 102109742 102110038 -87169516 - L2 LINE L2 -99 3173 2914 203 324 46 19 chr6 102110618 102110726 -87168828 + L2 LINE L2 3200 3310 -3 301 319 113 36 chr6 102110768 102111348 -87168206 + L2 LINE L2 2050 2664 -650 270 0 0 0 chr6 102111618 102111648 -87167906 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1634 163 25 21 chr6 102111650 102111932 -87167622 - AluJb SINE Alu -29 283 1 472 186 314 0 chr6 102112075 102112199 -87167355 + MER96 DNA MER1_type? 8 170 -5 518 213 80 84 chr6 102112348 102112634 -87166920 + L1ME4a LINE L1 5534 5818 -303 362 151 50 101 chr6 102112712 102112831 -87166723 + L1ME4a LINE L1 5954 6066 -55 1001 137 11 6 chr6 102112875 102113057 -87166497 - L1 LINE L1 -1810 4336 4154 2530 126 6 4 chr6 102113241 102113750 -87165804 + L1MA7 LINE L1 4974 5482 -743 1244 152 24 33 chr6 102113751 102113961 -87165593 + AluJo SINE Alu 1 208 -104 4547 157 28 6 chr6 102114029 102114825 -87164729 + L1MA7 LINE L1 5473 6285 -6 22 35 0 0 chr6 102114825 102114854 -87164700 + AT_rich Low_complexity Low_complexity 1 29 0 2112 223 39 122 chr6 102117043 102117993 -87161561 + MER31-int LTR ERV1 3186 4050 -886 2362 93 0 3 chr6 102117993 102118294 -87161260 + AluSq SINE Alu 1 300 -13 2112 223 39 122 chr6 102118294 102118345 -87161209 + MER31-int LTR ERV1 4050 4104 -832 401 181 43 141 chr6 102118527 102118769 -87160785 + LTR37A LTR ERV1 6 185 -241 711 154 0 8 chr6 102118798 102118928 -87160626 + LTR37A LTR ERV1 297 425 -1 2366 89 3 0 chr6 102119737 102120029 -87159525 - AluSp SINE Alu -20 293 1 1484 148 148 13 chr6 102120391 102120694 -87158860 - MER2 DNA MER2_type 0 344 1 391 271 225 46 chr6 102120941 102121225 -87158329 - MLT1J LTR MaLR -77 434 100 6080 125 20 25 chr6 102122062 102122777 -87156777 - L1PB1 LINE L1 0 6867 6150 2338 85 3 3 chr6 102122777 102123070 -87156484 - AluSc SINE Alu -16 293 1 2152 115 3 11 chr6 102123077 102123401 -87156153 - AluSx SINE Alu 0 322 1 6080 125 20 25 chr6 102123401 102123795 -87155759 - L1PB1 LINE L1 -723 6144 5761 2319 105 0 0 chr6 102123795 102124090 -87155464 - AluSg SINE Alu -15 295 1 6080 125 20 25 chr6 102124090 102124264 -87155290 - L1PB1 LINE L1 -1106 5761 5588 43888 31 22 1 chr6 102124272 102130298 -87149256 - L1PA2 LINE L1 0 6155 3 11218 193 16 2 chr6 102130322 102130777 -87148777 - L1PB1 LINE L1 -1276 5586 5139 195 42 0 0 chr6 102130777 102130801 -87148753 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 11218 193 16 2 chr6 102130801 102132623 -87146931 - L1PB1 LINE L1 -1723 5139 3277 2309 87 13 3 chr6 102132624 102132935 -87146619 - pTR5 LTR ERV1 -2046 392 79 363 198 55 73 chr6 102132935 102133046 -87146508 - LTR30 LTR ERV1 -80 642 375 4488 144 119 35 chr6 102133046 102134020 -87145534 - pTR5 LTR ERV1 -413 2025 743 15650 138 115 12 chr6 102134021 102134348 -87145206 - L1PB1 LINE L1 -3584 3278 2986 2222 77 3 21 chr6 102134348 102134634 -87144920 - AluSg SINE Alu -15 295 15 15650 138 115 12 chr6 102134634 102137283 -87142271 - L1PB1 LINE L1 -3876 2986 2 2041 186 42 7 chr6 102137316 102137773 -87141781 - L1M4 LINE L1 -1198 4948 4476 308 252 28 0 chr6 102137933 102138040 -87141514 + L2 LINE L2 2522 2631 -683 1806 175 44 3 chr6 102138063 102138360 -87141194 - AluJb SINE Alu -3 309 1 574 296 74 0 chr6 102138382 102138558 -87140996 + LTR50 LTR ERVL 2 190 -605 234 62 0 0 chr6 102138561 102138593 -87140961 + (T)n Simple_repeat Simple_repeat 1 32 0 205 273 65 0 chr6 102139091 102139168 -87140386 + L2 LINE L2 2723 2804 -510 1894 154 8 37 chr6 102139252 102139501 -87140053 + MLT2C1 LTR ERVL 1 239 -158 2401 84 0 0 chr6 102139501 102139798 -87139756 + AluY SINE Alu 1 297 -14 1894 154 8 37 chr6 102139798 102139899 -87139655 + MLT2C1 LTR ERVL 239 341 -56 311 242 0 0 chr6 102140223 102140289 -87139265 + L2 LINE L2 3248 3313 0 2347 91 0 10 chr6 102140859 102141157 -87138397 - AluSq SINE Alu -18 295 1 411 100 0 0 chr6 102141631 102141701 -87137853 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 321 331 11 43 chr6 102142175 102142359 -87137195 - MIR SINE MIR -39 223 46 589 229 102 19 chr6 102144296 102144501 -87135053 + MIR SINE MIR 1 222 -40 1619 166 62 39 chr6 102144520 102144875 -87134679 + MLT1A1 LTR MaLR 1 363 -2 272 214 31 71 chr6 102144967 102145065 -87134489 - MIR SINE MIR -50 212 119 5005 153 41 13 chr6 102145408 102146474 -87133080 + L1MB8 LINE L1 5091 6178 0 420 269 46 23 chr6 102146462 102146592 -87132962 + L1ME2 LINE L1 5584 5719 -450 * 28 29 0 0 chr6 102146596 102146631 -87132923 + AT_rich Low_complexity Low_complexity 1 35 0 1879 188 28 35 chr6 102146651 102147083 -87132471 + L1ME2 LINE L1 5727 6155 -9 2324 96 0 3 chr6 102147454 102147756 -87131798 - AluSx SINE Alu -11 301 1 2175 94 0 30 chr6 102147892 102148189 -87131365 + AluSx SINE Alu 10 297 -15 212 231 31 15 chr6 102148302 102148367 -87131187 + CT-rich Low_complexity Low_complexity 3 68 0 1629 184 66 7 chr6 102148397 102148685 -87130869 - AluJo SINE Alu -7 305 1 196 270 63 0 chr6 102148782 102148845 -87130709 - MIR SINE MIR -122 140 74 444 276 8 8 chr6 102148980 102149103 -87130451 - L2 LINE L2 0 3313 3191 1318 185 12 21 chr6 102149958 102150201 -87129353 - AluJo SINE Alu -17 295 55 336 186 82 41 chr6 102150249 102150346 -87129208 + MER5B DNA MER1_type 78 178 0 515 253 153 0 chr6 102150536 102150686 -87128868 + MER5A DNA MER1_type 9 181 -8 243 242 16 0 chr6 102152966 102153028 -87126526 + MLT1K LTR MaLR 509 571 -17 538 253 42 0 chr6 102153490 102153656 -87125898 + MER104 DNA MER2_type 5 177 -3 2308 94 3 3 chr6 102154165 102154462 -87125092 + AluSp SINE Alu 1 297 -16 542 207 17 17 chr6 102154804 102154920 -87124634 + MER3 DNA MER1_type 48 163 -46 1101 155 0 0 chr6 102154934 102155102 -87124452 - AluJo SINE Alu -25 287 120 391 89 36 0 chr6 102155102 102155158 -87124396 + MER3 DNA MER1_type 152 209 0 307 109 36 36 chr6 102155117 102155172 -87124382 - MER3 DNA MER1_type -119 90 36 * 1833 225 48 22 chr6 102155518 102155918 -87123636 + MER77 LTR ERV1 60 469 -136 186 175 0 70 chr6 102156063 102156120 -87123434 + L2 LINE L2 3261 3313 0 302 264 66 72 chr6 102157083 102157132 -87122422 - MIR3 SINE MIR -7 201 153 440 239 290 0 chr6 102157132 102157270 -87122284 + MER5B DNA MER1_type 1 178 0 302 264 66 72 chr6 102157270 102157387 -87122167 - MIR3 SINE MIR -55 153 36 1954 131 0 70 chr6 102157434 102157763 -87121791 + AluJo SINE Alu 1 306 -6 2353 109 0 0 chr6 102158503 102158814 -87120740 - AluSx SINE Alu -1 311 1 1964 156 3 10 chr6 102158903 102159217 -87120337 - AluJb SINE Alu 0 312 1 468 227 25 17 chr6 102159639 102159758 -87119796 - MER5A DNA MER1_type -9 180 61 5563 135 27 31 chr6 102160377 102160771 -87118783 + MER49 LTR ERV1 1 395 -528 1660 168 35 3 chr6 102160771 102161057 -87118497 + AluJo SINE Alu 6 300 -12 5563 135 27 31 chr6 102161057 102161589 -87117965 + MER49 LTR ERV1 395 923 0 26 0 0 0 chr6 102161711 102161737 -87117817 + AT_rich Low_complexity Low_complexity 1 26 0 298 93 0 0 chr6 102161892 102161935 -87117619 + MADE1 DNA Mariner 1 43 -37 2682 112 40 23 chr6 102162059 102162486 -87117068 + Tigger2a DNA MER2_type 1 434 0 274 119 34 0 chr6 102162486 102162530 -87117024 + (TATAG)n Simple_repeat Simple_repeat 3 51 -12 2513 83 0 0 chr6 102162530 102162832 -87116722 - AluSx SINE Alu -9 303 2 274 119 34 0 chr6 102162832 102162846 -87116708 + (TATAG)n Simple_repeat Simple_repeat 51 63 0 332 258 191 7 chr6 102163092 102163231 -87116323 - MIR SINE MIR -56 206 27 1441 124 0 44 chr6 102165072 102165297 -87114257 - AluJb SINE Alu -11 301 87 817 149 7 19 chr6 102165660 102165814 -87113740 - L1MB4 LINE L1 -56 6124 5973 1115 163 0 27 chr6 102165814 102165998 -87113556 - AluJo/FRAM SINE Alu 0 312 134 1910 100 0 0 chr6 102165998 102166239 -87113315 - AluSg/x SINE Alu 0 312 72 2082 152 3 7 chr6 102166294 102166604 -87112950 + AluJb SINE Alu 1 309 -3 452 242 30 0 chr6 102167279 102167411 -87112143 + LTR16A1 LTR ERVL 1 136 -321 21 82 0 0 chr6 102167677 102167726 -87111828 + AT_rich Low_complexity Low_complexity 1 49 0 298 336 18 27 chr6 102167800 102167910 -87111644 - L3 LINE CR1 -97 1480 1372 349 244 42 76 chr6 102168685 102168804 -87110750 + L2 LINE L2 3197 3311 -2 588 240 161 71 chr6 102169769 102170178 -87109376 - L2 LINE L2 -1 3312 2867 358 304 95 19 chr6 102170346 102170504 -87109050 + MER5A DNA MER1_type 1 170 -19 491 254 0 0 chr6 102171413 102171535 -87108019 + L1ME3A LINE L1 6044 6165 -5 2215 105 3 7 chr6 102172249 102172544 -87107010 - AluSx SINE Alu -18 294 1 1826 168 3 23 chr6 102173595 102173904 -87105650 + AluJb SINE Alu 1 303 -9 292 266 0 21 chr6 102174107 102174201 -87105353 + L1ME3A LINE L1 3760 3851 -2295 2289 117 0 0 chr6 102174281 102174579 -87104975 - AluSx SINE Alu -9 303 6 286 246 0 0 chr6 102174972 102175033 -87104521 + L1MC4a LINE L1 592 652 -5467 300 198 56 0 chr6 102175050 102175176 -87104378 + (TTATA)n Simple_repeat Simple_repeat 1 133 0 1304 269 86 17 chr6 102175389 102176044 -87103510 + L1MC4a LINE L1 3829 4528 -1601 1987 113 24 46 chr6 102176044 102176415 -87103139 + THE1C LTR MaLR 1 363 -12 412 237 40 13 chr6 102176421 102176573 -87102981 + L1MC4a LINE L1 5212 5367 -762 1153 244 144 80 chr6 102176646 102177444 -87102110 + L1ME3A LINE L1 5300 6156 -14 186 209 0 0 chr6 102178375 102178418 -87101136 + (TG)n Simple_repeat Simple_repeat 1 43 0 911 204 0 0 chr6 102178515 102178677 -87100877 - FRAM SINE Alu -10 166 5 718 252 24 38 chr6 102178719 102178929 -87100625 + MIR SINE MIR 43 249 -13 1925 141 18 0 chr6 102178946 102179222 -87100332 + AluSx SINE Alu 9 289 -23 486 120 0 0 chr6 102179222 102179297 -87100257 + (TA)n Simple_repeat Simple_repeat 1 75 0 224 278 0 0 chr6 102181109 102181163 -87098391 + (CA)n Simple_repeat Simple_repeat 1 54 0 295 270 58 11 chr6 102182054 102182228 -87097326 - L1MC/D LINE L1 -2347 5461 5280 270 268 37 0 chr6 102182231 102182313 -87097241 - L1MC/D LINE L1 -2178 3968 3884 597 233 129 4 chr6 102182319 102182551 -87097003 + L1MC4a LINE L1 5632 5892 -1899 473 353 94 18 chr6 102182683 102183077 -87096477 + L3 LINE CR1 1004 1427 -150 1069 174 33 62 chr6 102183077 102183332 -87096222 + L1ME3 LINE L1 5895 6143 -19 1752 213 39 53 chr6 102183332 102183843 -87095711 + MLT1D LTR MaLR 2 505 0 1069 174 33 62 chr6 102183843 102183862 -87095692 + L1ME3 LINE L1 6143 6161 -1 611 231 28 33 chr6 102184515 102184697 -87094857 + MER5A DNA MER1_type 9 189 0 2126 172 33 0 chr6 102185181 102185577 -87093977 + L1MA9 LINE L1 5902 6310 -2 435 329 86 5 chr6 102186589 102186799 -87092755 - MIR SINE MIR -35 227 1 804 259 49 18 chr6 102186816 102187040 -87092514 - MIR SINE MIR 0 262 32 530 275 13 20 chr6 102187040 102187189 -87092365 + MLT1F1 LTR MaLR 2 149 -418 437 215 168 30 chr6 102187404 102187642 -87091912 + MLT1H LTR MaLR 324 588 -2 1538 175 54 27 chr6 102187656 102187953 -87091601 - AluJo SINE Alu -7 305 1 1744 142 83 44 chr6 102188740 102189100 -87090454 - MSTB2 LTR MaLR 0 457 84 1053 306 69 12 chr6 102189129 102189639 -87089915 - MER115 DNA AcHobo -96 597 59 815 274 73 39 chr6 102189676 102190059 -87089495 + LTR33 LTR ERVL 106 501 -20 348 293 94 0 chr6 102191005 102191111 -87088443 + L2 LINE L2 3138 3253 -19 458 83 0 3 chr6 102191282 102191351 -87088203 + L1MB3 LINE L1 5532 5598 -573 329 158 20 129 chr6 102191358 102191459 -87088095 - L1MC4 LINE L1 -1339 6703 6614 426 116 2 94 chr6 102191471 102191894 -87087660 + (TA)n Simple_repeat Simple_repeat 1 384 0 3147 141 30 16 chr6 102191930 102192489 -87087065 + L1MB3 LINE L1 5610 6176 -7 1769 189 10 3 chr6 102192517 102192823 -87086731 + AluJb SINE Alu 1 308 -4 23 0 0 0 chr6 102193058 102193081 -87086473 + AT_rich Low_complexity Low_complexity 1 23 0 509 113 28 0 chr6 102193082 102193153 -87086401 - MER5B DNA MER1_type -45 133 61 2077 138 3 3 chr6 102193159 102193456 -87086098 - AluSx SINE Alu -15 297 1 7431 32 30 0 chr6 102193655 102195031 -87084523 - L1PA5 LINE L1 -4 6150 4756 1046 180 131 4 chr6 102196102 102196346 -87083208 + ORSL DNA AcHobo 1 275 0 644 207 46 52 chr6 102196409 102196583 -87082971 + MIR SINE MIR 86 258 -4 2224 103 14 7 chr6 102196583 102196873 -87082681 + AluSx SINE Alu 1 292 -20 443 250 65 8 chr6 102197384 102197508 -87082046 - MIR SINE MIR -54 208 78 1948 189 17 3 chr6 102197742 102198102 -87081452 + MLT1A1 LTR MaLR 1 365 0 6158 169 18 34 chr6 102199163 102199238 -87080316 + L1PA13 LINE L1 3229 3304 -2842 1966 152 38 0 chr6 102199238 102199528 -87080026 + AluSx SINE Alu 1 301 -11 6158 169 18 34 chr6 102199528 102200734 -87078820 + L1PA13 LINE L1 3304 4490 -1656 4134 142 19 50 chr6 102202435 102203298 -87076256 + L1PA13 LINE L1 4477 5366 -795 2149 103 12 82 chr6 102203298 102203629 -87075925 + AluSx SINE Alu 5 312 0 4134 142 19 50 chr6 102203629 102204086 -87075468 + L1PA13 LINE L1 5366 5757 -404 1671 163 4 0 chr6 102204086 102204337 -87075217 + AluSg SINE Alu 1 252 -58 4134 142 19 50 chr6 102204337 102204408 -87075146 + L1PA13 LINE L1 5757 5829 -332 733 127 23 21 chr6 102204408 102204635 -87074919 + AluJb SINE Alu 1 283 -29 1845 140 70 15 chr6 102204650 102204979 -87074575 + L1PA13 LINE L1 5815 6161 -2 212 31 62 0 chr6 102204996 102205028 -87074526 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 1534 186 75 14 chr6 102205105 102205385 -87074169 + AluJo SINE Alu 1 297 -15 261 155 56 0 chr6 102205796 102205867 -87073687 + GA-rich Low_complexity Low_complexity 2 76 0 288 254 34 0 chr6 102206011 102206070 -87073484 + L2 LINE L2 3192 3252 -20 489 245 0 10 chr6 102206161 102206263 -87073291 + MER5B DNA MER1_type 4 104 -74 671 253 11 11 chr6 102206394 102206568 -87072986 - MER5B DNA MER1_type -3 175 2 2346 93 10 0 chr6 102206825 102207125 -87072429 - AluSx SINE Alu -9 303 1 653 253 51 0 chr6 102207296 102207474 -87072080 - MER3 DNA MER1_type 0 209 23 30 0 0 0 chr6 102207483 102207513 -87072041 + AT_rich Low_complexity Low_complexity 1 30 0 241 296 65 35 chr6 102207653 102207822 -87071732 + L2 LINE L2 590 763 -2551 333 300 197 35 chr6 102207851 102208161 -87071393 - L2 LINE L2 -20 3252 2893 207 318 0 54 chr6 102208368 102208516 -87071038 + L2 LINE L2 1611 1750 -1564 1498 160 81 19 chr6 102208578 102208776 -87070778 - L1MC1 LINE L1 0 6333 6108 1656 173 57 20 chr6 102208776 102209077 -87070477 - AluJo SINE Alu 0 312 1 1498 160 81 19 chr6 102209077 102209185 -87070369 - L1MC1 LINE L1 -225 6108 6008 567 287 135 17 chr6 102209378 102209674 -87069880 + L2 LINE L2 2015 2345 -969 226 390 20 7 chr6 102209752 102209898 -87069656 - L2 LINE L2 -438 2876 2729 335 308 69 2 chr6 102210766 102210947 -87068607 - MIR SINE MIR -55 153 4 235 272 155 10 chr6 102212116 102212219 -87067335 + MIR3 SINE MIR 38 155 -53 438 274 14 14 chr6 102212293 102212439 -87067115 - MER103 DNA DNA -19 147 2 204 217 33 67 chr6 102212484 102212544 -87067010 + MIR3 SINE MIR 144 201 -7 2285 89 14 0 chr6 102212645 102212926 -87066628 + AluSx SINE Alu 1 308 0 187 43 0 0 chr6 102212926 102212949 -87066605 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 365 291 17 8 chr6 102213075 102213192 -87066362 + Charlie7 DNA MER1_type 2490 2607 -5 2270 95 14 3 chr6 102215449 102215744 -87063810 + AluSx SINE Alu 10 307 -5 1102 188 76 20 chr6 102215815 102216065 -87063489 - LTR48B LTR ERV1 0 644 381 1259 165 169 0 chr6 102216067 102216340 -87063214 - LTR48 LTR ERV1 -335 452 134 9600 179 14 29 chr6 102216340 102218338 -87061216 + L1PB4 LINE L1 2877 4845 -1301 4766 122 63 75 chr6 102218322 102218541 -87061013 + L1PB4 LINE L1 5058 5278 -878 * 183 42 0 0 chr6 102218541 102218565 -87060989 + (CAA)n Simple_repeat Simple_repeat 1 24 0 4766 122 63 75 chr6 102218565 102218939 -87060615 + L1PB4 LINE L1 5278 5655 -501 2310 112 165 35 chr6 102218939 102219369 -87060185 + LTR19A LTR ERV1 1 486 0 4766 122 63 75 chr6 102219369 102219769 -87059785 + L1PB4 LINE L1 5655 6024 -132 2115 106 0 44 chr6 102219769 102220089 -87059465 + AluSx SINE Alu 1 306 -6 4766 122 63 75 chr6 102220089 102220218 -87059336 + L1PB4 LINE L1 6024 6153 -3 463 222 111 9 chr6 102220226 102220334 -87059220 - LTR48 LTR ERV1 -636 151 33 1998 213 98 71 chr6 102220369 102221070 -87058484 - MER72 LTR ERV1 0 722 3 1256 148 108 9 chr6 102221070 102221293 -87058261 - L1PB3 LINE L1 -7 6147 5903 * 3724 186 28 5 chr6 102221286 102221357 -87058197 + L1 LINE L1 4328 4396 -1750 284 0 0 27 chr6 102221357 102221394 -87058160 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 3724 186 28 5 chr6 102221394 102222087 -87057467 + L1 LINE L1 4396 5109 -1037 516 240 81 39 chr6 102222239 102222385 -87057169 - LTR24B LTR ERV1 0 569 431 201 39 0 0 chr6 102222385 102222411 -87057143 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 516 240 81 39 chr6 102222411 102222564 -87056990 - LTR24B LTR ERV1 -138 431 145 419 165 0 25 chr6 102222667 102222746 -87056808 - LTR24B LTR ERV1 -499 77 1 389 350 45 9 chr6 102222771 102222991 -87056563 - L2 LINE L2 -1291 2023 1796 238 296 0 0 chr6 102222994 102223048 -87056506 - MER5A DNA MER1_type 0 189 136 1079 197 21 10 chr6 102223202 102223395 -87056159 - LTR8 LTR ERV1 0 691 497 * 1150 111 25 61 chr6 102223389 102223587 -87055967 - LTR8 LTR ERV1 -498 193 3 360 154 165 0 chr6 102223732 102223823 -87055731 - L1MB7 LINE L1 0 6184 6079 2997 186 38 60 chr6 102223824 102224783 -87054771 - L1ME1 LINE L1 -130 6036 5116 1523 161 93 18 chr6 102224783 102225063 -87054491 - AluJo SINE Alu -11 301 1 2997 186 38 60 chr6 102225063 102225231 -87054323 - L1ME1 LINE L1 -1050 5116 4946 194 295 205 9 chr6 102225392 102225504 -87054050 - L2 LINE L2 -579 2735 2602 381 272 72 8 chr6 102225609 102225734 -87053820 - MARNA DNA Mariner -322 264 132 963 129 0 0 chr6 102229337 102229461 -87050093 - FLAM_C SINE Alu -9 124 1 1511 199 0 8 chr6 102229553 102229820 -87049734 + AluJo SINE Alu 32 296 -16 316 296 194 16 chr6 102230750 102230936 -87048618 + MIR SINE MIR 10 228 -34 931 143 300 30 chr6 102231135 102231365 -87048189 - AluJo SINE Alu -11 301 10 342 249 69 79 chr6 102231846 102232035 -87047519 - L1ME3A LINE L1 -15 6155 5969 1918 194 87 39 chr6 102232621 102233136 -87046418 - MER119 DNA MER1_type 0 583 44 936 186 12 0 chr6 102233165 102233337 -87046217 + L1MB3 LINE L1 5843 6016 -167 337 143 16 17 chr6 102233325 102233406 -87046148 + L1MC4 LINE L1 7709 8040 0 * 353 161 25 12 chr6 102234141 102234222 -87045332 - MER113 DNA MER1_type? -426 95 14 1208 155 14 33 chr6 102234438 102234675 -87044879 - AluJb SINE Alu 0 307 75 771 221 141 24 chr6 102234823 102235179 -87044375 - MLT1J2 LTR MaLR -10 440 59 2067 120 10 10 chr6 102235301 102235592 -87043962 - AluSx SINE Alu -21 291 1 243 170 0 0 chr6 102235612 102235659 -87043895 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2167 130 7 0 chr6 102236345 102236646 -87042908 - AluSx SINE Alu -9 303 1 3026 145 32 49 chr6 102236697 102237264 -87042290 - MER34B LTR ERV1 0 565 9 1161 146 0 34 chr6 102237292 102237470 -87042084 + FAM SINE Alu 1 172 -3 238 280 20 0 chr6 102237483 102237533 -87042021 + MER58B DNA MER1_type 2 52 -289 * 618 211 8 8 chr6 102237532 102237655 -87041899 + MER58B DNA MER1_type 204 326 -15 2157 112 0 7 chr6 102237806 102238102 -87041452 - AluSx SINE Alu -18 294 1 335 278 111 37 chr6 102238151 102238175 -87041379 - MER5A DNA MER1_type 0 189 168 3641 162 104 76 chr6 102238175 102238270 -87041284 - MER4D LTR ERV1 0 903 812 2305 116 3 0 chr6 102238270 102238581 -87040973 - AluSq SINE Alu -1 312 1 3641 162 104 76 chr6 102238581 102238640 -87040914 - MER4D LTR ERV1 -91 812 756 1990 144 10 0 chr6 102238640 102238945 -87040609 - AluSx SINE Alu -4 308 1 3641 162 104 76 chr6 102238945 102238991 -87040563 - MER4D LTR ERV1 -147 756 713 1850 149 3 44 chr6 102238991 102239307 -87040247 + AluJb SINE Alu 1 303 -9 3641 162 104 76 chr6 102239307 102239981 -87039573 - MER4D LTR ERV1 -190 713 3 335 278 111 37 chr6 102239981 102240118 -87039436 - MER5A DNA MER1_type -21 168 16 1277 126 33 60 chr6 102240123 102240338 -87039216 - AluJb SINE Alu -19 293 85 2215 116 0 0 chr6 102241335 102241629 -87037925 + AluSq SINE Alu 1 294 -19 3575 144 14 48 chr6 102241706 102241910 -87037644 + Tigger1 DNA MER2_type 26 235 -2183 2274 103 6 13 chr6 102241910 102242087 -87037467 - AluSx SINE Alu -2 310 134 2141 118 3 0 chr6 102242087 102242393 -87037161 - AluSc SINE Alu -2 307 1 2274 103 6 13 chr6 102242393 102242527 -87037027 - AluSx SINE Alu -178 134 1 3575 144 14 48 chr6 102242527 102242720 -87036834 + Tigger1 DNA MER2_type 235 398 -2020 2148 117 3 0 chr6 102242720 102243031 -87036523 + AluSq SINE Alu 1 312 0 3575 144 14 48 chr6 102243031 102243250 -87036304 + Tigger1 DNA MER2_type 398 623 -1795 1828 165 0 24 chr6 102243250 102243348 -87036206 + AluJb SINE Alu 1 100 -212 2725 96 27 3 chr6 102243348 102243714 -87035840 + THE1C LTR MaLR 1 375 0 1828 165 0 24 chr6 102243714 102243912 -87035642 + AluJb SINE Alu 100 290 -22 7992 101 22 34 chr6 102243921 102244331 -87035223 + Tigger1 DNA MER2_type 614 1027 -1391 2218 112 7 0 chr6 102244331 102244636 -87034918 - AluSp SINE Alu -6 307 1 7992 101 22 34 chr6 102244636 102244802 -87034752 + Tigger1 DNA MER2_type 1027 1193 -1225 2068 137 17 0 chr6 102244802 102245102 -87034452 + AluJb SINE Alu 1 305 -7 7992 101 22 34 chr6 102245102 102245398 -87034156 + Tigger1 DNA MER2_type 1193 1491 -927 2688 46 0 0 chr6 102245398 102245705 -87033849 + AluY SINE Alu 1 307 -4 7992 101 22 34 chr6 102245705 102246076 -87033478 + Tigger1 DNA MER2_type 1491 1845 -573 367 295 80 52 chr6 102246078 102246403 -87033151 + MER65A LTR ERV1 1 334 -111 3344 144 26 29 chr6 102246502 102246704 -87032850 + Tigger1 DNA MER2_type 1836 2037 -381 1934 105 94 0 chr6 102246704 102246981 -87032573 + AluSx SINE Alu 1 303 -9 3344 144 26 29 chr6 102246981 102247161 -87032393 + Tigger1 DNA MER2_type 2037 2216 -202 1351 197 65 7 chr6 102247161 102247451 -87032103 - AluJo SINE Alu -5 307 1 3344 144 26 29 chr6 102247451 102247651 -87031903 + Tigger1 DNA MER2_type 2216 2417 -1 2003 148 0 3 chr6 102247675 102247978 -87031576 + AluJb SINE Alu 1 302 -10 1514 164 62 0 chr6 102248564 102248838 -87030716 + AluJo SINE Alu 1 291 -21 27 0 0 0 chr6 102249254 102249281 -87030273 + AT_rich Low_complexity Low_complexity 1 27 0 196 316 84 32 chr6 102249444 102249599 -87029955 + MIR3 SINE MIR 1 163 -45 359 260 16 39 chr6 102249670 102249797 -87029757 - L1ME3A LINE L1 -70 6100 5977 2421 154 30 11 chr6 102249797 102250238 -87029316 - Tigger6a DNA MER2_type 0 1083 635 1051 126 31 6 chr6 102250238 102250397 -87029157 - AluSc SINE Alu -21 288 126 221 0 35 0 chr6 102250397 102250426 -87029128 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 261 0 0 0 chr6 102250430 102250459 -87029095 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2211 90 0 7 chr6 102250463 102250751 -87028803 - AluY SINE Alu -24 287 2 3062 191 39 10 chr6 102250752 102251376 -87028178 - Tigger6a DNA MER2_type -441 642 1 2006 143 0 10 chr6 102251497 102251791 -87027763 - AluSx SINE Alu -19 293 3 2433 149 39 15 chr6 102251835 102252129 -87027425 - MSTA LTR MaLR 0 428 120 2959 108 30 26 chr6 102252129 102252514 -87027040 + MSTA LTR MaLR 1 390 -38 1874 138 11 4 chr6 102252514 102252789 -87026765 - AluSx SINE Alu 0 312 36 2959 108 30 26 chr6 102252789 102252829 -87026725 + MSTA LTR MaLR 390 428 0 2433 149 39 15 chr6 102252829 102252943 -87026611 - MSTA LTR MaLR -308 120 10 1902 171 116 0 chr6 102252960 102253306 -87026248 - MLT1B LTR MaLR -4 386 1 1827 227 61 40 chr6 102253481 102254006 -87025548 - MLT1F LTR MaLR -6 536 1 2219 158 11 16 chr6 102254478 102254845 -87024709 + MLT1A1 LTR MaLR 1 365 0 2130 162 36 30 chr6 102254944 102255487 -87024067 - MLT2A2 LTR ERVL -8 546 1 2418 71 3 14 chr6 102255730 102256027 -87023527 - AluSp SINE Alu -19 294 1 1195 205 13 26 chr6 102256218 102256452 -87023102 - AluJo SINE Alu -81 231 1 27 81 0 0 chr6 102256875 102256937 -87022617 + AT_rich Low_complexity Low_complexity 1 62 0 2317 79 7 0 chr6 102257081 102257371 -87022183 - AluSx SINE Alu -6 306 15 1854 143 0 42 chr6 102257556 102257863 -87021691 - AluSx SINE Alu -18 294 1 2304 95 0 0 chr6 102258599 102258921 -87020633 + AluSx SINE Alu 1 322 0 1471 184 39 39 chr6 102259508 102259817 -87019737 - AluJo SINE Alu -3 309 1 658 224 107 31 chr6 102259851 102260141 -87019413 - L1ME4a LINE L1 -215 5906 5595 2003 104 0 7 chr6 102260231 102260500 -87019054 - AluSx SINE Alu -45 267 1 2273 107 0 3 chr6 102261770 102262070 -87017484 - AluSx SINE Alu -13 299 1 534 183 80 103 chr6 102262099 102262228 -87017326 + MIR SINE MIR 9 134 -128 1747 185 0 22 chr6 102262228 102262541 -87017013 + AluJb SINE Alu 1 306 -6 534 183 80 103 chr6 102262541 102262586 -87016968 + MIR SINE MIR 134 179 -83 972 275 181 23 chr6 102262605 102263342 -87016212 - L1ME4a LINE L1 -16 6105 5270 1770 178 3 3 chr6 102263364 102263656 -87015898 - AluJb SINE Alu -20 292 1 761 168 15 23 chr6 102263712 102263843 -87015711 + FLAM_A SINE Alu 1 130 -3 1347 91 0 76 chr6 102265151 102265349 -87014205 + MER30B DNA MER1_type 4 186 -4 527 279 130 68 chr6 102266663 102266986 -87012568 - L1ME4a LINE L1 -25 6096 5794 1686 158 21 11 chr6 102266986 102267292 -87012262 + AluJo SINE Alu 1 309 0 527 279 130 68 chr6 102267292 102267315 -87012239 - L1ME4a LINE L1 -327 5794 5774 260 53 26 0 chr6 102267315 102267353 -87012201 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 527 279 130 68 chr6 102267353 102267603 -87011951 - L1ME4a LINE L1 -347 5774 5461 1760 105 27 19 chr6 102267770 102268028 -87011526 + AluSx SINE Alu 53 312 0 960 230 84 88 chr6 102268029 102268481 -87011073 - L2 LINE L2 -1047 2267 1818 1008 90 0 0 chr6 102268481 102268614 -87010940 + AluSp/q SINE Alu 176 308 -5 186 240 20 0 chr6 102268617 102268667 -87010887 - L2 LINE L2 -1481 1833 1783 1684 142 54 19 chr6 102268668 102268985 -87010569 - MLT1C LTR MaLR -139 328 1 2192 116 26 0 chr6 102269778 102270080 -87009474 + AluSx SINE Alu 1 310 -2 1963 131 0 7 chr6 102270346 102270649 -87008905 + AluSx SINE Alu 1 301 0 279 0 0 0 chr6 102270756 102270787 -87008767 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2263 70 0 0 chr6 102271095 102271366 -87008188 - AluY SINE Alu -40 271 1 535 237 111 0 chr6 102272356 102272491 -87007063 - L1ME LINE L1 -442 5679 5530 1906 116 0 12 chr6 102272818 102273108 -87006446 - AluSx SINE Alu 0 317 31 323 232 106 28 chr6 102273335 102273477 -87006077 - L1ME4a LINE L1 -9 6112 5960 2502 66 0 0 chr6 102273590 102273893 -87005661 - AluY SINE Alu -8 303 1 246 280 0 13 chr6 102273961 102274036 -87005518 - L1ME4a LINE L1 -84 6037 5964 2489 73 0 0 chr6 102274139 102274441 -87005113 + AluY SINE Alu 1 302 -9 28 29 0 0 chr6 102274467 102274502 -87005052 + AT_rich Low_complexity Low_complexity 1 35 0 1478 237 62 34 chr6 102274611 102274790 -87004764 + MLT1C LTR MaLR 1 173 -294 2126 135 20 0 chr6 102274790 102275093 -87004461 + 7SLRNA srpRNA srpRNA 1 309 -11 2176 85 0 73 chr6 102275100 102275430 -87004124 + AluSx SINE Alu 1 306 -6 1478 237 62 34 chr6 102275430 102275659 -87003895 + MLT1C LTR MaLR 178 429 -38 279 338 142 38 chr6 102275667 102275907 -87003647 - L2 LINE L2 -14 3258 2994 337 255 199 14 chr6 102275908 102276049 -87003505 - L1ME4a LINE L1 -347 5774 5608 406 252 18 92 chr6 102276054 102276227 -87003327 - L1ME4a LINE L1 -294 5827 5643 305 74 0 19 chr6 102276227 102276281 -87003273 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 1282 41 0 0 chr6 102276281 102276427 -87003127 - L1PA4 LINE L1 -10 6145 6000 406 252 18 92 chr6 102276427 102276470 -87003084 - L1ME4a LINE L1 -476 5645 5626 46 62 0 0 chr6 102277162 102277243 -87002311 + AT_rich Low_complexity Low_complexity 1 81 0 1612 145 68 57 chr6 102277323 102277619 -87001935 + AluJb SINE Alu 12 310 -2 566 256 23 56 chr6 102277773 102277945 -87001609 + L1ME LINE L1 5388 5553 -568 1219 180 59 5 chr6 102277945 102278167 -87001387 + MER46A DNA MER2_type 1 234 -2 566 256 23 56 chr6 102278167 102278209 -87001345 + L1ME LINE L1 5553 5595 -526 189 159 0 0 chr6 102278376 102278420 -87001134 + (CTG)n Simple_repeat Simple_repeat 1 44 0 200 269 264 5 chr6 102279288 102279496 -87000058 - L3 LINE CR1 -183 1394 1133 430 237 201 66 chr6 102279546 102279850 -86999704 - L3 LINE CR1 -556 1021 677 237 33 0 0 chr6 102280543 102280573 -86998981 + (TC)n Simple_repeat Simple_repeat 2 31 0 1967 112 36 7 chr6 102280579 102280857 -86998697 - AluSx SINE Alu -26 286 1 302 230 93 58 chr6 102281633 102281772 -86997782 + MER20B DNA MER1_type 36 179 -604 21 0 0 0 chr6 102282620 102282641 -86996913 + AT_rich Low_complexity Low_complexity 1 21 0 430 225 0 0 chr6 102282798 102282878 -86996676 + Tigger3(Golem) DNA MER2_type 2 81 -2948 27 49 0 0 chr6 102282970 102283011 -86996543 + AT_rich Low_complexity Low_complexity 1 41 0 600 118 12 0 chr6 102283011 102283096 -86996458 + Tigger3(Golem) DNA MER2_type 2920 3005 -24 683 131 49 25 chr6 102283138 102283260 -86996294 - MLT1A1 LTR MaLR 0 374 250 26 0 0 0 chr6 102283261 102283287 -86996267 + AT_rich Low_complexity Low_complexity 1 26 0 730 160 59 0 chr6 102283287 102283406 -86996148 - AluJo SINE Alu -176 136 11 1015 159 60 76 chr6 102283408 102283659 -86995895 - MLT1A1 LTR MaLR -118 247 1 786 298 48 0 chr6 102283679 102283907 -86995647 + MIR SINE MIR 8 246 -16 476 253 31 25 chr6 102283989 102284151 -86995403 - L1ME LINE L1 -425 5696 5534 1053 165 0 0 chr6 102284952 102285116 -86994438 + FRAM SINE Alu 1 163 -13 300 158 129 119 chr6 102285397 102285498 -86994056 + MER112 DNA MER1_type 1 102 -158 537 44 0 0 chr6 102285516 102285584 -86993970 + (CTATT)n Simple_repeat Simple_repeat 5 72 0 363 229 0 0 chr6 102285586 102285656 -86993898 + MER112 DNA MER1_type 179 248 -12 201 219 24 0 chr6 102286836 102286877 -86992677 - MIR3 SINE MIR -10 198 157 256 278 14 0 chr6 102286880 102286952 -86992602 - MER112 DNA MER1_type -5 255 183 277 272 61 78 chr6 102287081 102287261 -86992293 - L2 LINE L2 0 3272 3096 1269 234 111 28 chr6 102287464 102287888 -86991666 + MLT1C LTR MaLR 1 459 -8 2787 41 0 6 chr6 102288128 102288446 -86991108 + L1PA5 LINE L1 5833 6148 -6 1317 180 29 64 chr6 102288460 102288804 -86990750 + MER39 LTR ERV1 354 685 -22 1497 215 80 80 chr6 102289767 102290055 -86989499 - MLT1D LTR MaLR -3 502 212 1923 152 0 26 chr6 102290055 102290365 -86989189 - AluJo SINE Alu -10 302 1 1497 215 80 80 chr6 102290365 102290578 -86988976 - MLT1D LTR MaLR -292 213 1 774 134 45 15 chr6 102290580 102290714 -86988840 - MER31B LTR ERV1 0 466 329 577 152 20 10 chr6 102290734 102290833 -86988721 + AluJo SINE Alu 52 151 -161 1536 152 26 45 chr6 102290849 102291158 -86988396 - MER31B LTR ERV1 -163 303 1 2338 57 4 0 chr6 102291602 102291916 -86987638 + AluY SINE Alu 1 315 0 421 309 67 27 chr6 102292423 102292646 -86986908 - MIR SINE MIR -12 250 19 1797 103 0 4 chr6 102293174 102293417 -86986137 - AluSx SINE Alu -14 298 57 1472 222 26 17 chr6 102294349 102294701 -86984853 - L1MB7 LINE L1 -1 6183 5829 327 213 147 47 chr6 102294760 102294910 -86984644 - L1MC5 LINE L1 -76 7885 7721 21 0 0 0 chr6 102295007 102295028 -86984526 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 102295162 102295186 -86984368 + AT_rich Low_complexity Low_complexity 1 24 0 530 305 62 48 chr6 102295676 102296050 -86983504 + MLT1J LTR MaLR 196 614 -1 241 308 85 31 chr6 102296208 102296338 -86983216 + MER20 DNA MER1_type 79 215 -4 180 0 0 0 chr6 102297622 102297642 -86981912 + (T)n Simple_repeat Simple_repeat 1 20 0 768 140 0 0 chr6 102299015 102299122 -86980432 + FLAM_C SINE Alu 3 109 -34 183 222 74 0 chr6 102299406 102299460 -86980094 - MIR SINE MIR -21 241 184 291 313 36 27 chr6 102300102 102300214 -86979340 + MIR SINE MIR 21 133 -129 1281 241 150 34 chr6 102300216 102300967 -86978587 - L2 LINE L2 -8 3305 2477 1515 168 35 39 chr6 102301068 102301354 -86978200 - AluJo SINE Alu -27 285 1 3811 146 75 19 chr6 102302299 102302965 -86976589 + L1MA9 LINE L1 5554 6264 -48 2176 114 13 0 chr6 102302965 102303264 -86976290 - AluSx SINE Alu -9 303 1 3811 146 75 19 chr6 102303264 102303316 -86976238 + L1MA9 LINE L1 6264 6312 0 1234 181 29 29 chr6 102304737 102304980 -86974574 - MLT1F1 LTR MaLR 0 567 325 241 218 39 51 chr6 102306030 102306108 -86973446 - MIR3 SINE MIR -21 187 111 816 236 21 56 chr6 102306325 102306558 -86972996 - MIR SINE MIR -34 228 4 1236 263 67 13 chr6 102306576 102306948 -86972606 + MLT1I LTR MaLR 10 401 -8 1394 169 30 8 chr6 102307172 102307439 -86972115 - L1MB7 LINE L1 -10 6174 5902 311 298 96 0 chr6 102307439 102307543 -86972011 + L2 LINE L2 3200 3313 0 685 290 42 19 chr6 102308117 102308331 -86971223 + MIR SINE MIR 12 230 -32 21 36 0 0 chr6 102308569 102308597 -86970957 + AT_rich Low_complexity Low_complexity 1 28 0 869 102 34 0 chr6 102308597 102308715 -86970839 - AluJo SINE Alu -177 135 14 1517 150 92 27 chr6 102309560 102309853 -86969701 - AluJo SINE Alu 0 312 1 1202 285 72 12 chr6 102309870 102310288 -86969266 - L1ME3A LINE L1 -1 6169 5727 1492 110 59 9 chr6 102310644 102310745 -86968809 - MER30 DNA MER1_type 0 230 136 2051 130 3 3 chr6 102310745 102311038 -86968516 + AluSx SINE Alu 1 293 -19 1492 110 59 9 chr6 102311038 102311050 -86968504 - MER30 DNA MER1_type -94 136 126 216 0 0 0 chr6 102311050 102311074 -86968480 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1492 110 59 9 chr6 102311074 102311178 -86968376 - MER30 DNA MER1_type -104 126 1 1335 245 78 19 chr6 102311296 102311794 -86967760 - L1ME3A LINE L1 -449 5721 5192 340 222 23 129 chr6 102312148 102312319 -86967235 + MLT1D LTR MaLR 1 153 -352 687 254 180 42 chr6 102312436 102312719 -86966835 + MLT1D LTR MaLR 111 432 -73 2079 178 90 49 chr6 102312719 102313138 -86966416 + MLT2B1 LTR ERVL 1 444 -76 2025 125 14 7 chr6 102313138 102313426 -86966128 - AluSx SINE Alu -22 290 1 2079 178 90 49 chr6 102313426 102313495 -86966059 + MLT2B1 LTR ERVL 444 509 -11 382 135 67 45 chr6 102313490 102313514 -86966040 + MLT1D LTR MaLR 415 437 -68 * 1646 203 0 3 chr6 102313514 102313819 -86965735 - AluJo SINE Alu -8 304 1 382 135 67 45 chr6 102313819 102313883 -86965671 + MLT1D LTR MaLR 437 505 0 384 279 75 37 chr6 102314610 102314771 -86964783 - L2 LINE L2 0 3313 3147 503 287 53 7 chr6 102314872 102315022 -86964532 - L2 LINE L2 0 3272 3116 210 234 0 0 chr6 102315788 102315835 -86963719 - L2 LINE L2 0 3313 3267 1238 149 35 5 chr6 102315836 102316037 -86963517 + MER3 DNA MER1_type 2 208 -1 354 274 103 27 chr6 102316187 102316333 -86963221 - MIR3 SINE MIR -3 205 49 190 286 182 0 chr6 102316697 102316774 -86962780 - L2 LINE L2 -21 3251 3161 856 207 81 71 chr6 102316809 102317104 -86962450 + MER46C DNA MER2_type 19 316 -22 2252 113 0 0 chr6 102317358 102317660 -86961894 - AluY SINE Alu -9 302 1 24 67 0 0 chr6 102317669 102317714 -86961840 + AT_rich Low_complexity Low_complexity 1 45 0 349 185 74 93 chr6 102317733 102317816 -86961738 + L1ME4a LINE L1 5959 6042 -79 2596 55 13 0 chr6 102317816 102318125 -86961429 - AluSp SINE Alu 0 313 1 349 185 74 93 chr6 102318125 102318161 -86961393 + L1ME4a LINE L1 6042 6077 -44 785 234 98 41 chr6 102318161 102318405 -86961149 - MIR SINE MIR 0 262 5 349 185 74 93 chr6 102318405 102318446 -86961108 + L1ME4a LINE L1 6077 6117 -4 516 104 0 0 chr6 102318446 102318523 -86961031 + L1MA1 LINE L1 6226 6302 0 1541 183 36 11 chr6 102319635 102319816 -86959738 - AluJo SINE Alu 0 310 117 294 38 38 19 chr6 102319816 102319869 -86959685 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1541 183 36 11 chr6 102319869 102319990 -86959564 - AluJo SINE Alu -193 117 1 1896 154 3 7 chr6 102320199 102320498 -86959056 - AluJb SINE Alu -14 298 1 182 390 50 0 chr6 102321128 102321228 -86958326 - L2 LINE L2 -37 3276 3172 25 31 0 0 chr6 102321962 102321994 -86957560 + AT_rich Low_complexity Low_complexity 1 32 0 2597 68 0 0 chr6 102322011 102322322 -86957232 - AluY SINE Alu 0 311 1 1666 181 7 20 chr6 102322501 102322805 -86956749 + AluJo SINE Alu 1 300 -12 682 132 5 58 chr6 102322835 102323025 -86956529 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 1796 159 7 36 chr6 102323085 102323394 -86956160 + AluJb SINE Alu 1 300 -12 200 244 0 0 chr6 102323873 102323914 -86955640 - L2 LINE L2 -10 3303 3263 2797 10 0 0 chr6 102324100 102324432 -86955122 - AluYb8 SINE Alu 0 332 1 1571 166 53 11 chr6 102324813 102325097 -86954457 + AluJo SINE Alu 1 296 -16 529 182 69 44 chr6 102325167 102325326 -86954228 - MIR SINE MIR 0 262 100 314 310 0 10 chr6 102325367 102325467 -86954087 - MIR SINE MIR 0 262 164 186 203 17 68 chr6 102326345 102326404 -86953150 - MIR SINE MIR -101 161 106 2521 76 0 0 chr6 102326512 102326815 -86952739 + AluSg SINE Alu 1 303 -7 25 31 0 0 chr6 102326977 102327009 -86952545 + AT_rich Low_complexity Low_complexity 1 32 0 836 209 66 25 chr6 102327369 102327565 -86951989 - MIR SINE MIR -25 237 34 317 301 49 8 chr6 102327594 102327717 -86951837 + L2 LINE L2 264 391 -2923 277 312 229 41 chr6 102327743 102328301 -86951253 + L2 LINE L2 920 1582 -1732 2234 89 7 0 chr6 102328677 102328984 -86950570 + AluSx SINE Alu 1 309 0 2218 112 3 0 chr6 102328985 102329280 -86950274 + AluSq SINE Alu 3 298 -15 1210 197 56 16 chr6 102329285 102329534 -86950020 - AluJb SINE Alu -53 259 1 205 204 68 0 chr6 102330281 102330325 -86949229 + L2 LINE L2 3262 3308 -5 258 302 135 16 chr6 102331082 102331208 -86948346 + MIR SINE MIR 13 153 -109 210 333 162 56 chr6 102331968 102332311 -86947243 - L2 LINE L2 -9 3263 2857 1860 139 35 3 chr6 102332311 102332598 -86946956 + AluJb SINE Alu 1 296 -16 210 333 162 56 chr6 102332598 102332735 -86946819 - L2 LINE L2 -415 2857 2736 2012 85 68 10 chr6 102334427 102334722 -86944832 - AluSx SINE Alu 0 312 1 413 295 114 102 chr6 102335902 102336498 -86943056 - L1M2 LINE L1 -5471 1378 776 1847 137 3 6 chr6 102336626 102336939 -86942615 - AluJb SINE Alu 0 312 1 2171 94 52 0 chr6 102337958 102338244 -86941310 + AluSx SINE Alu 4 304 -8 1350 124 27 89 chr6 102338244 102338503 -86941051 + AluJb SINE Alu 45 287 -25 438 194 16 57 chr6 102338987 102339111 -86940443 - MIR SINE MIR -42 220 102 232 234 190 29 chr6 102339503 102339640 -86939914 - L1ME4a LINE L1 0 6121 5963 21 0 0 0 chr6 102339808 102339829 -86939725 + AT_rich Low_complexity Low_complexity 1 21 0 308 56 0 0 chr6 102339859 102339895 -86939659 + U2 snRNA snRNA 1 36 -152 21 57 0 0 chr6 102339932 102339967 -86939587 + AT_rich Low_complexity Low_complexity 1 35 0 808 146 0 46 chr6 102341574 102341704 -86937850 + FLAM_C SINE Alu 2 125 -18 373 294 103 22 chr6 102342584 102342720 -86936834 - MER5A DNA MER1_type 0 189 43 2472 85 0 0 chr6 102343397 102343703 -86935851 - AluSg SINE Alu -4 306 1 360 257 68 1 chr6 102344106 102344310 -86935244 - MER112 DNA MER1_type -6 254 8 2157 117 0 3 chr6 102344980 102345280 -86934274 - AluSg SINE Alu -11 299 1 237 263 0 0 chr6 102345701 102345758 -86933796 + L2 LINE L2 3256 3312 -1 385 328 115 52 chr6 102345889 102346093 -86933461 - L2 LINE L2 -454 2860 2670 537 16 0 0 chr6 102346093 102346155 -86933399 + (TGGA)n Simple_repeat Simple_repeat 2 63 0 385 328 115 52 chr6 102346155 102346188 -86933366 - L2 LINE L2 -644 2670 2641 1880 173 0 10 chr6 102346188 102346489 -86933065 + AluJo SINE Alu 1 298 -14 385 328 115 52 chr6 102346489 102346833 -86932721 - L2 LINE L2 -673 2641 2241 607 224 71 33 chr6 102347424 102347607 -86931947 + MIR SINE MIR 73 262 0 1641 187 23 13 chr6 102349603 102349902 -86929652 + AluJo SINE Alu 1 302 -10 182 355 0 0 chr6 102351991 102352053 -86927501 - L2 LINE L2 -6 3266 3205 664 168 10 0 chr6 102352819 102352920 -86926634 - AluJ SINE Alu -19 293 192 840 182 0 7 chr6 102352920 102353063 -86926491 - AluJ SINE Alu -170 142 1 200 219 0 0 chr6 102353316 102353357 -86926197 + MER5B DNA MER1_type 1 41 -137 266 116 0 0 chr6 102353388 102353431 -86926123 + AluJ/FLAM SINE Alu 32 74 -228 298 313 76 21 chr6 102353436 102353580 -86925974 + MIR3 SINE MIR 55 206 -2 719 301 177 5 chr6 102353695 102354327 -86925227 + L1ME4a LINE L1 5379 6119 -2 37 76 0 0 chr6 102354387 102354466 -86925088 + AT_rich Low_complexity Low_complexity 1 79 0 186 159 0 48 chr6 102354489 102354552 -86925002 + GA-rich Low_complexity Low_complexity 1 60 0 1698 183 10 10 chr6 102354564 102354875 -86924679 + AluJb SINE Alu 1 311 -1 913 196 258 43 chr6 102356271 102356670 -86922884 + L1MC4 LINE L1 7558 8042 0 2109 101 24 20 chr6 102356696 102356994 -86922560 + AluSg SINE Alu 1 299 -11 627 294 51 0 chr6 102357042 102357219 -86922335 + MIR SINE MIR 47 232 -30 320 314 184 19 chr6 102357458 102357665 -86921889 - MIR SINE MIR -6 256 16 2313 73 17 0 chr6 102357814 102358101 -86921453 + AluSp SINE Alu 5 296 -17 754 233 159 7 chr6 102358370 102358653 -86920901 + L1ME4a LINE L1 5793 6118 -3 216 200 0 0 chr6 102358800 102358845 -86920709 + (TG)n Simple_repeat Simple_repeat 1 45 0 392 0 21 0 chr6 102359648 102359696 -86919858 + (TG)n Simple_repeat Simple_repeat 2 50 0 514 277 54 74 chr6 102360102 102360228 -86919326 + MIR SINE MIR 23 150 -112 2447 142 64 35 chr6 102360228 102360650 -86918904 + Tigger2a DNA MER2_type 1 434 0 514 277 54 74 chr6 102360650 102360691 -86918863 + MIR SINE MIR 150 190 -72 683 195 34 8 chr6 102360691 102360809 -86918745 + FLAM_A SINE Alu 2 122 -11 514 277 54 74 chr6 102360809 102360882 -86918672 + MIR SINE MIR 190 259 -3 2341 74 7 0 chr6 102361379 102361676 -86917878 + AluSp SINE Alu 1 299 -14 1543 180 35 21 chr6 102362122 102362411 -86917143 - AluJo SINE Alu -19 293 1 2341 96 0 0 chr6 102363983 102364285 -86915269 + AluY SINE Alu 1 302 -9 858 185 107 69 chr6 102364476 102364692 -86914862 + MER58A DNA MER1_type 1 224 0 294 245 91 87 chr6 102365003 102365211 -86914343 - L1ME3A LINE L1 -279 5891 5683 253 200 77 15 chr6 102365291 102365356 -86914198 - L1ME3A LINE L1 -645 5517 5449 1279 173 124 15 chr6 102365658 102365758 -86913796 + AluJo SINE Alu 2 90 -212 204 40 0 0 chr6 102365758 102365783 -86913771 + (TA)n Simple_repeat Simple_repeat 1 25 0 1279 173 124 15 chr6 102365783 102365948 -86913606 + AluJo SINE Alu 90 296 -6 2394 63 0 7 chr6 102365951 102366253 -86913301 + AluSg SINE Alu 1 300 -10 1142 193 48 0 chr6 102366320 102366569 -86912985 + L1ME1 LINE L1 5902 6162 -4 1931 112 66 0 chr6 102367199 102367486 -86912068 + AluSc SINE Alu 1 306 -3 912 230 0 0 chr6 102367704 102367865 -86911689 - FRAM SINE Alu -5 161 1 2309 74 7 0 chr6 102367892 102368190 -86911364 + AluY SINE Alu 1 300 -11 936 182 0 23 chr6 102368275 102368451 -86911103 + FAM SINE Alu 1 46 -3 237 248 116 23 chr6 102369569 102369698 -86909856 + Charlie2 DNA MER1_type 48 188 -2674 1538 235 97 26 chr6 102369773 102370339 -86909215 + Charlie2 DNA MER1_type 1851 2456 -406 313 176 44 0 chr6 102371556 102371624 -86907930 - MER3 DNA MER1_type -8 201 131 836 211 80 21 chr6 102371633 102371870 -86907684 + L1MB3 LINE L1 5924 6174 -9 546 186 43 86 chr6 102371870 102371963 -86907591 - MER3 DNA MER1_type -27 135 48 3731 121 2 6 chr6 102371963 102372492 -86907062 - MER1A DNA MER1_type 0 527 1 546 186 43 86 chr6 102372492 102372538 -86907016 - MER3 DNA MER1_type -114 48 2 2355 69 3 3 chr6 102372632 102372937 -86906617 + AluY SINE Alu 1 305 -6 274 292 115 23 chr6 102373153 102373283 -86906271 + MIR SINE MIR 79 220 -42 4785 163 44 33 chr6 102373299 102373973 -86905581 + L1MB7 LINE L1 4903 5568 -616 2101 114 3 0 chr6 102373973 102374262 -86905292 + AluSq SINE Alu 1 290 -23 4785 163 44 33 chr6 102374262 102374460 -86905094 + L1MB7 LINE L1 5568 5762 -422 1787 186 0 0 chr6 102374460 102374756 -86904798 + AluJo SINE Alu 1 296 -16 4785 163 44 33 chr6 102374756 102375029 -86904525 + L1MB7 LINE L1 5762 6056 -128 1946 144 0 13 chr6 102375029 102375334 -86904220 + AluJb SINE Alu 2 302 -10 4785 163 44 33 chr6 102375334 102375446 -86904108 + L1MB7 LINE L1 6056 6165 -19 1706 163 10 29 chr6 102375549 102375862 -86903692 + AluJo SINE Alu 1 307 -5 354 278 43 93 chr6 102377147 102377945 -86901609 + L1MEd LINE L1 921 1695 -795 21 82 0 0 chr6 102378213 102378262 -86901292 + AT_rich Low_complexity Low_complexity 1 49 0 1827 155 0 10 chr6 102378332 102378636 -86900918 + AluJo SINE Alu 1 301 -11 712 165 16 0 chr6 102378648 102378769 -86900785 + FLAM_A SINE Alu 20 142 0 1939 181 37 163 chr6 102379150 102379779 -86899775 + L1ME1 LINE L1 4769 5475 -691 216 0 0 0 chr6 102379779 102379803 -86899751 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1732 130 30 4 chr6 102379806 102380076 -86899478 - AluJb SINE Alu -35 277 1 2271 96 3 6 chr6 102380086 102380398 -86899156 - AluSx SINE Alu -1 311 1 1939 181 37 163 chr6 102380398 102380834 -86898720 + L1ME1 LINE L1 5487 5733 -433 1277 26 6 0 chr6 102380834 102380990 -86898564 + AluY SINE Alu 154 310 -1 804 216 135 103 chr6 102380991 102381222 -86898332 + L1ME1 LINE L1 5727 5976 -190 2119 125 7 0 chr6 102381222 102381526 -86898028 + AluSq SINE Alu 1 306 -7 804 216 135 103 chr6 102381526 102381664 -86897890 + L1ME1 LINE L1 5976 6108 -58 427 238 111 24 chr6 102382006 102382132 -86897422 - MIR SINE MIR -4 258 122 1445 167 4 31 chr6 102382847 102383104 -86896450 + AluJo SINE Alu 1 250 -62 916 125 0 0 chr6 102383125 102383261 -86896293 - FLAM_C SINE Alu -7 136 1 386 256 45 77 chr6 102383520 102383766 -86895788 - MER112 DNA MER1_type -9 251 14 267 132 151 38 chr6 102383890 102383943 -86895611 + tRNA-Lys-AAA tRNA tRNA 1 59 -17 271 230 110 0 chr6 102384432 102384532 -86895022 - L2 LINE L2 -211 3061 2951 1973 133 7 0 chr6 102384620 102384913 -86894641 - AluSx SINE Alu -17 295 1 186 296 99 0 chr6 102385226 102385307 -86894247 + L2 LINE L2 3221 3309 -4 2213 94 0 16 chr6 102385396 102385703 -86893851 - AluSg SINE Alu -8 302 1 656 201 72 0 chr6 102386361 102386500 -86893054 + L1MB1 LINE L1 6017 6165 -3 2371 47 7 13 chr6 102386517 102386818 -86892736 + AluY SINE Alu 1 299 -12 1790 123 0 85 chr6 102386974 102387314 -86892240 - AluJo SINE Alu 0 312 2 204 239 22 22 chr6 102387633 102387679 -86891875 + L2 LINE L2 3221 3266 -6 2354 62 0 13 chr6 102388426 102388733 -86890821 + AluY SINE Alu 1 303 -8 324 341 54 0 chr6 102388756 102388885 -86890669 + MIR3 SINE MIR 2 137 -71 233 205 0 13 chr6 102388888 102388966 -86890588 + (CA)n Simple_repeat Simple_repeat 1 77 0 3974 139 69 33 chr6 102389588 102390345 -86889209 + LTR1 LTR ERV1 2 785 0 26 0 0 0 chr6 102390644 102390670 -86888884 + AT_rich Low_complexity Low_complexity 1 26 0 2136 119 0 13 chr6 102390713 102391024 -86888530 + AluSx SINE Alu 1 307 -5 22 0 0 0 chr6 102391701 102391723 -86887831 + AT_rich Low_complexity Low_complexity 1 22 0 670 216 0 0 chr6 102391730 102391846 -86887708 + FLAM_A SINE Alu 1 116 -17 204 122 0 0 chr6 102395279 102395320 -86884234 + (TCC)n Simple_repeat Simple_repeat 3 43 0 24 67 0 0 chr6 102395359 102395404 -86884150 + GC_rich Low_complexity Low_complexity 1 45 0 29 60 0 0 chr6 102395463 102395513 -86884041 + GC_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr6 102395554 102395576 -86883978 + GC_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr6 102395686 102395717 -86883837 + GC_rich Low_complexity Low_complexity 1 31 0 340 307 59 0 chr6 102396754 102396855 -86882699 - L2 LINE L2 -15 3257 3151 608 240 125 34 chr6 102396999 102397409 -86882145 - LTR33 LTR ERVL 0 521 17 190 271 176 12 chr6 102397473 102397558 -86881996 + MIR SINE MIR 94 192 -70 2119 123 3 0 chr6 102398013 102398314 -86881240 - AluSx SINE Alu -10 302 1 276 269 0 0 chr6 102398869 102398962 -86880592 + GA-rich Low_complexity Low_complexity 1 93 0 303 306 166 31 chr6 102399319 102399512 -86880042 - MIR SINE MIR -6 256 38 1404 89 26 5 chr6 102399544 102399734 -86879820 - MER30 DNA MER1_type -36 194 1 190 0 32 32 chr6 102399922 102399953 -86879601 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 406 272 152 29 chr6 102400883 102401245 -86878309 - L2 LINE L2 -181 3132 2724 1450 186 29 10 chr6 102401245 102401551 -86878003 + AluJo SINE Alu 1 312 0 387 127 0 0 chr6 102401555 102401618 -86877936 + (GGGA)n Simple_repeat Simple_repeat 4 66 0 1654 181 0 28 chr6 102401659 102401979 -86877575 + AluJo SINE Alu 1 311 -1 946 221 98 104 chr6 102401996 102402494 -86877060 + MLT1H1 LTR MaLR 3 502 -52 2160 101 3 0 chr6 102402520 102402817 -86876737 + AluSq SINE Alu 1 298 -15 418 156 39 26 chr6 102402832 102402909 -86876645 + AluS SINE Alu 1 78 -225 1833 116 18 7 chr6 102402909 102403186 -86876368 + AluSx SINE Alu 33 312 0 532 324 111 23 chr6 102403245 102403551 -86876003 - L2 LINE L2 -622 2692 2360 30 45 0 0 chr6 102403654 102403698 -86875856 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr6 102403808 102403836 -86875718 + AT_rich Low_complexity Low_complexity 1 28 0 2134 98 6 22 chr6 102403842 102404158 -86875396 + AluSx SINE Alu 1 311 -1 2062 124 0 13 chr6 102404164 102404478 -86875076 + AluSg SINE Alu 1 310 0 662 198 0 8 chr6 102404489 102404615 -86874939 + FLAM_A SINE Alu 2 126 -7 532 266 74 61 chr6 102405034 102405346 -86874208 + MLT1L LTR MaLR 212 527 -88 2013 110 0 77 chr6 102405895 102406232 -86873322 - AluSx SINE Alu -1 311 1 911 214 183 8 chr6 102406523 102406775 -86872779 + AluSx SINE Alu 9 304 -8 1576 184 0 20 chr6 102407173 102407467 -86872087 + AluJo SINE Alu 1 288 -24 875 224 58 18 chr6 102407617 102407805 -86871749 + MIR SINE MIR 31 231 -31 2233 109 21 53 chr6 102407805 102408181 -86871373 - THE1B LTR MaLR 0 364 1 875 224 58 18 chr6 102408181 102408215 -86871339 + MIR SINE MIR 231 262 0 246 256 218 0 chr6 102408361 102408439 -86871115 + L2 LINE L2 3134 3228 -44 2045 132 0 0 chr6 102408797 102409101 -86870453 - AluSx SINE Alu -8 304 1 269 176 39 0 chr6 102409156 102409207 -86870347 + MLT1L LTR MaLR 127 179 -436 823 169 0 66 chr6 102409429 102409595 -86869959 - AluJb SINE Alu -21 291 137 307 280 40 0 chr6 102409728 102409828 -86869726 + L1MD2 LINE L1 4065 4168 -1978 4322 159 51 56 chr6 102409869 102410174 -86869380 + L1MD2 LINE L1 5119 5424 -935 1482 149 51 29 chr6 102410174 102410450 -86869104 - AluJo SINE Alu -30 282 1 4322 159 51 56 chr6 102410450 102410967 -86868587 + L1MD2 LINE L1 5424 5926 -433 2070 97 7 10 chr6 102410967 102411257 -86868297 - AluSx SINE Alu -23 289 1 4322 159 51 56 chr6 102411257 102411463 -86868091 + L1MD2 LINE L1 5926 6132 -227 297 0 0 0 chr6 102411463 102411496 -86868058 + (CA)n Simple_repeat Simple_repeat 2 34 0 2040 125 6 22 chr6 102412075 102412388 -86867166 + AluSx SINE Alu 1 308 -4 236 257 122 0 chr6 102412429 102412503 -86867051 + L1ME4a LINE L1 4763 4845 -1301 376 346 47 0 chr6 102412545 102412672 -86866882 + L1ME4a LINE L1 4980 5112 -1034 1088 256 122 63 chr6 102412673 102412835 -86866719 + L1ME4a LINE L1 5325 5476 -694 2350 54 17 3 chr6 102412835 102413130 -86866424 - AluY SINE Alu -12 299 1 1088 256 122 63 chr6 102413130 102413565 -86865989 + L1ME4a LINE L1 5476 5957 -213 355 338 14 7 chr6 102413688 102413833 -86865721 - L2 LINE L2 -1415 1899 1754 2236 87 7 7 chr6 102414407 102414706 -86864848 + AluSq SINE Alu 1 299 -14 1517 165 88 0 chr6 102414865 102415138 -86864416 + AluJo SINE Alu 1 297 -15 2274 89 0 13 chr6 102415410 102415723 -86863831 + AluSg SINE Alu 1 309 -1 284 287 21 32 chr6 102415875 102415969 -86863585 - L2 LINE L2 -3 3310 3218 21 100 0 0 chr6 102416470 102416540 -86863014 + GC_rich Low_complexity Low_complexity 1 70 0 342 349 115 5 chr6 102417458 102417650 -86861904 + MIR SINE MIR 10 222 -40 907 143 300 30 chr6 102417843 102418073 -86861481 - AluJo SINE Alu -11 301 10 369 254 69 79 chr6 102418554 102418743 -86860811 - L1ME3A LINE L1 -15 6155 5969 392 206 163 31 chr6 102469070 102469230 -86810324 + L1ME4a LINE L1 5940 6120 -1 1826 127 60 3 chr6 102469233 102469517 -86810037 - AluSg SINE Alu -10 300 1 1100 70 0 0 chr6 102469517 102469646 -86809908 - AluSg SINE Alu -177 133 5 2455 84 0 0 chr6 102470882 102471181 -86808373 - AluSq SINE Alu -14 299 1 1972 118 33 0 chr6 102471193 102471488 -86808066 - AluSc SINE Alu 0 304 1 1633 188 64 6 chr6 102471741 102472071 -86807483 - L1ME1 LINE L1 -57 6109 5761 268 151 19 0 chr6 102472304 102472357 -86807197 - MER5B DNA MER1_type 0 178 125 201 162 0 0 chr6 102472360 102472397 -86807157 + A-rich Low_complexity Low_complexity 1 37 0 455 205 0 0 chr6 102472412 102472490 -86807064 + MER81 DNA DNA 1 78 -36 338 195 9 71 chr6 102472499 102472612 -86806942 + MER5B DNA MER1_type 70 175 -3 1762 127 21 103 chr6 102475809 102475942 -86803612 + AluJo SINE Alu 1 143 -169 2138 132 0 3 chr6 102475942 102476237 -86803317 + AluSx SINE Alu 1 294 -18 1762 127 21 103 chr6 102476237 102476443 -86803111 + AluJo SINE Alu 143 312 0 468 278 66 7 chr6 102476790 102476941 -86802613 + MER5B DNA MER1_type 3 162 -16 726 230 23 0 chr6 102477017 102477191 -86802363 + MER5B DNA MER1_type 1 178 0 266 266 81 7 chr6 102480278 102480498 -86799056 - L1ME3A LINE L1 -185 5936 5696 2330 108 0 0 chr6 102481434 102481731 -86797823 - AluSx SINE Alu -15 297 1 309 190 52 0 chr6 102482109 102482167 -86797387 - Charlie1 DNA MER1_type -1 2760 2700 636 193 0 73 chr6 102482327 102482363 -86797191 - FLAM_C SINE Alu -172 140 103 2451 80 0 13 chr6 102482363 102482675 -86796879 + AluY SINE Alu 1 308 -3 636 193 0 73 chr6 102482675 102482788 -86796766 - FLAM_C SINE Alu -209 103 2 253 259 82 59 chr6 102482792 102482927 -86796627 - MIR3 SINE MIR -67 141 4 331 216 137 10 chr6 102483126 102483228 -86796326 + MER91C DNA MER1_type 26 140 0 931 167 86 0 chr6 102483936 102484110 -86795444 + MER5A DNA MER1_type 1 189 0 551 209 80 61 chr6 102484140 102484303 -86795251 - MER91A DNA MER1_type 0 196 31 223 154 0 0 chr6 102484582 102484621 -86794933 + G-rich Low_complexity Low_complexity 1 39 0 255 284 74 11 chr6 102485989 102486084 -86793470 + L2 LINE L2 3171 3271 -1 228 220 130 73 chr6 102486461 102486580 -86792974 - L1ME4a LINE L1 -5 6116 5982 2258 115 0 0 chr6 102486580 102486876 -86792678 + AluSx SINE Alu 1 296 -16 228 220 130 73 chr6 102486876 102486933 -86792621 - L1ME4a LINE L1 -139 5982 5930 511 206 103 64 chr6 102486997 102487201 -86792353 - L1MC4 LINE L1 0 8042 7831 1749 162 20 7 chr6 102487317 102487614 -86791940 - AluSx SINE Alu -11 301 1 1422 98 0 0 chr6 102488701 102488875 -86790679 - AluSx SINE Alu -77 235 62 195 279 128 12 chr6 102489524 102489610 -86789944 - L2 LINE L2 -24 3248 3153 2428 141 30 35 chr6 102489797 102490071 -86789483 - MSTB1 LTR MaLR 0 432 158 2300 67 0 7 chr6 102490071 102490381 -86789173 + AluY SINE Alu 5 312 0 2428 141 30 35 chr6 102490381 102490539 -86789015 - MSTB1 LTR MaLR -274 158 1 1236 148 50 5 chr6 102494002 102494204 -86785350 - AluJb SINE Alu -16 296 86 1480 167 22 22 chr6 102496019 102496294 -86783260 + AluJo SINE Alu 16 290 -22 1217 171 159 8 chr6 102496371 102496629 -86782925 - AluSx SINE Alu -15 297 1 1676 132 127 15 chr6 102497709 102498049 -86781505 - L1MB8 LINE L1 0 6178 5801 1235 208 51 32 chr6 102498061 102498260 -86781294 - L1MB8 LINE L1 -540 5638 5426 2183 127 7 3 chr6 102498260 102498560 -86780994 - AluSx SINE Alu -11 301 1 1235 208 51 32 chr6 102498560 102498703 -86780851 - L1MB8 LINE L1 -752 5426 5287 33 25 0 0 chr6 102499143 102499183 -86780371 + AT_rich Low_complexity Low_complexity 1 40 0 767 216 20 0 chr6 102499606 102499759 -86779795 + AluJb SINE Alu 134 289 -23 252 221 179 0 chr6 102500450 102500545 -86779009 + MIR SINE MIR 117 228 -34 262 102 0 20 chr6 102500571 102500620 -86778934 + Alu SINE Alu 1 48 -255 1084 94 0 0 chr6 102500626 102500764 -86778790 + AluSg/x SINE Alu 152 289 -21 235 226 271 0 chr6 102501234 102501389 -86778165 + MIR SINE MIR 46 242 -20 25 31 0 0 chr6 102501722 102501754 -86777800 + AT_rich Low_complexity Low_complexity 1 32 0 2331 86 17 3 chr6 102502173 102502475 -86777079 + AluSq SINE Alu 1 306 -7 2106 119 3 20 chr6 102503307 102503610 -86775944 - AluSx SINE Alu -14 298 1 23 33 0 0 chr6 102505470 102505500 -86774054 + AT_rich Low_complexity Low_complexity 1 30 0 410 265 177 0 chr6 102506324 102506471 -86773083 + MIR SINE MIR 56 228 -34 1076 197 8 74 chr6 102507572 102507816 -86771738 + MER8 DNA MER2_type 12 239 0 1603 156 45 21 chr6 102508373 102508661 -86770893 - AluJo SINE Alu -12 300 6 1868 142 8 0 chr6 102509276 102509543 -86770011 + AluJo SINE Alu 25 293 -19 719 149 0 0 chr6 102510166 102510273 -86769281 + AluJo/FLAM SINE Alu 2 108 -204 1461 156 3 90 chr6 102510273 102510594 -86768960 + AluJb SINE Alu 16 308 -4 376 194 54 151 chr6 102510786 102510972 -86768582 - MIR SINE MIR -48 214 47 2289 90 0 31 chr6 102512612 102512934 -86766620 + AluSx SINE Alu 1 312 0 2019 90 32 4 chr6 102512941 102513218 -86766336 + AluSx SINE Alu 21 305 -7 22 35 0 0 chr6 102514506 102514535 -86765019 + AT_rich Low_complexity Low_complexity 1 29 0 357 219 0 0 chr6 102514989 102515062 -86764492 + HAL1 LINE L1 2435 2507 0 224 272 74 0 chr6 102515078 102515159 -86764395 - MIR SINE MIR -119 143 57 1368 114 24 0 chr6 102516250 102516461 -86763093 + L1MA5 LINE L1 6083 6298 -2 305 259 92 40 chr6 102516505 102516679 -86762875 + MIR SINE MIR 77 259 -3 504 146 0 0 chr6 102517199 102517281 -86762273 + L1MA5 LINE L1 6206 6287 -13 262 300 43 38 chr6 102517556 102517766 -86761788 + L1ME LINE L1 5688 5898 -223 424 319 79 32 chr6 102518646 102518862 -86760692 + MIR SINE MIR 30 255 -7 1250 129 158 0 chr6 102519315 102519605 -86759949 + Tigger3(Golem) DNA MER2_type 1 3015 -14 929 191 8 133 chr6 102520604 102520674 -86758880 + MER58A DNA MER1_type 1 78 -2342 1544 173 32 18 chr6 102520674 102520958 -86758596 + AluJo SINE Alu 1 288 -24 929 191 8 133 chr6 102520958 102521143 -86758411 + MER58A DNA MER1_type 78 224 0 192 40 0 0 chr6 102521228 102521253 -86758301 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2297 106 3 0 chr6 102521465 102521766 -86757788 - AluSp SINE Alu -11 302 1 1763 180 7 7 chr6 102521768 102522063 -86757491 - AluJb SINE Alu -17 295 1 23 68 0 0 chr6 102522316 102522360 -86757194 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr6 102523183 102523215 -86756339 + AT_rich Low_complexity Low_complexity 1 32 0 236 288 0 0 chr6 102524231 102524297 -86755257 + A-rich Low_complexity Low_complexity 1 66 0 253 226 36 48 chr6 102524846 102524930 -86754624 + MIR3 SINE MIR 119 201 -7 420 226 38 30 chr6 102525121 102525232 -86754322 + L1ME4a LINE L1 5772 5886 -235 2404 88 0 25 chr6 102525232 102525551 -86754003 + AluY SINE Alu 1 311 0 420 226 38 30 chr6 102525551 102525572 -86753982 + L1ME4a LINE L1 5886 5905 -216 279 237 137 15 chr6 102525601 102525732 -86753822 + L1ME4a LINE L1 5975 6121 0 1771 150 10 3 chr6 102526613 102526906 -86752648 - AluJo SINE Alu -17 295 1 2239 118 0 3 chr6 102527006 102527312 -86752242 + AluSg1 SINE Alu 1 305 -4 2086 136 0 3 chr6 102527337 102527645 -86751909 + AluSx SINE Alu 1 307 -5 1478 147 5 0 chr6 102527842 102528060 -86751494 - AluSg/x SINE Alu -9 301 83 840 152 0 14 chr6 102528067 102528212 -86751342 - FLAM_C SINE Alu 0 143 1 860 205 20 13 chr6 102528243 102528394 -86751160 + FRAM SINE Alu 1 151 -25 364 262 75 86 chr6 102528411 102528690 -86750864 - L1MC4a LINE L1 -1959 5849 5574 235 100 0 40 chr6 102530955 102531005 -86748549 + (TTA)n Simple_repeat Simple_repeat 1 48 0 267 156 0 0 chr6 102531277 102531322 -86748232 - MIR SINE MIR -63 145 101 1275 110 0 0 chr6 102531502 102531665 -86747889 + AluSc SINE Alu 1 163 -146 288 0 0 0 chr6 102531719 102531751 -86747803 + (TA)n Simple_repeat Simple_repeat 2 33 0 2316 98 0 13 chr6 102531751 102532056 -86747498 - AluSq SINE Alu -11 302 2 457 163 209 0 chr6 102532693 102532779 -86746775 + L1MB5 LINE L1 6012 6115 -59 851 147 0 29 chr6 102532932 102533068 -86746486 + FLAM_C SINE Alu 1 132 -11 1033 209 5 9 chr6 102533078 102533288 -86746266 + AluJo SINE Alu 97 305 -7 24 67 0 0 chr6 102534460 102534505 -86745049 + AT_rich Low_complexity Low_complexity 1 45 0 352 200 0 14 chr6 102538043 102538113 -86741441 - Charlie8 DNA MER1_type -2 2415 2347 347 242 49 58 chr6 102538122 102538264 -86741290 - Charlie8 DNA MER1_type -2154 263 167 245 284 25 0 chr6 102538590 102538671 -86740883 + A-rich Low_complexity Low_complexity 2 84 0 2014 143 7 7 chr6 102538673 102538973 -86740581 - AluSx SINE Alu -12 300 1 578 187 134 8 chr6 102539370 102539504 -86740050 + MER5A DNA MER1_type 39 189 0 2120 78 0 0 chr6 102539572 102539828 -86739726 + AluSc SINE Alu 2 257 -52 641 106 0 71 chr6 102539832 102539945 -86739609 + AluSg/x SINE Alu 204 308 -1 220 417 63 8 chr6 102540375 102540502 -86739052 + L2 LINE L2 3124 3257 -15 214 200 0 55 chr6 102540618 102540673 -86738881 - L2 LINE L2 -6 3266 3215 347 309 28 40 chr6 102540784 102540940 -86738614 - MIR SINE MIR -62 146 3 1963 154 106 14 chr6 102540998 102541355 -86738199 + MLT1B LTR MaLR 1 390 0 2127 138 0 0 chr6 102542751 102543048 -86736506 - AluSx SINE Alu -10 302 6 851 129 8 0 chr6 102543407 102543531 -86736023 - FLAM_C SINE Alu -18 125 1 244 154 0 0 chr6 102543639 102543678 -86735876 - MER63 DNA MER1_type -43 1017 979 391 191 15 0 chr6 102543680 102543748 -86735806 - MER63 DNA MER1_type -311 751 683 1402 175 49 65 chr6 102543925 102544006 -86735548 + AluJb SINE Alu 1 82 -230 2457 66 27 0 chr6 102544006 102544307 -86735247 + AluY SINE Alu 1 309 -2 1402 175 49 65 chr6 102544307 102544533 -86735021 + AluJb SINE Alu 82 303 -9 328 233 38 51 chr6 102545079 102545184 -86734370 - MIR SINE MIR -62 146 59 2220 94 0 10 chr6 102545641 102545948 -86733606 + AluSc SINE Alu 1 304 -5 23 0 0 0 chr6 102545966 102545989 -86733565 + AT_rich Low_complexity Low_complexity 1 23 0 2088 136 3 0 chr6 102547723 102548024 -86731530 + AluSx SINE Alu 1 302 -10 1760 158 15 0 chr6 102550467 102550732 -86728822 + AluSx SINE Alu 1 269 -43 22 35 0 0 chr6 102551834 102551863 -86727691 + AT_rich Low_complexity Low_complexity 1 29 0 1711 147 55 0 chr6 102551870 102552142 -86727412 + AluJo SINE Alu 1 287 -25 318 304 16 0 chr6 102553165 102553290 -86726264 + L1ME4a LINE L1 5742 5868 -253 368 342 35 25 chr6 102554897 102555099 -86724455 - MIR SINE MIR -10 252 49 1096 138 107 58 chr6 102555109 102555334 -86724220 + MER46A DNA MER2_type 1 236 0 287 291 77 64 chr6 102555798 102556018 -86723536 + MLT1J LTR MaLR 289 511 0 1531 168 7 37 chr6 102556135 102556432 -86723122 - AluJb SINE Alu -24 288 1 2178 112 3 7 chr6 102556531 102556834 -86722720 + AluSg1 SINE Alu 1 302 -7 398 261 131 89 chr6 102558750 102559164 -86720390 + L1MC/D LINE L1 4873 5313 -833 2227 111 3 3 chr6 102559164 102559461 -86720093 - AluSx SINE Alu -15 297 1 398 261 131 89 chr6 102559461 102559551 -86720003 + L1MC/D LINE L1 5313 5398 -748 308 272 37 69 chr6 102559800 102560020 -86719534 + L1MC/D LINE L1 5604 5822 -299 270 284 186 26 chr6 102561902 102562096 -86717458 + MIR SINE MIR 8 232 -30 1718 187 48 12 chr6 102562688 102563019 -86716535 - MER2 DNA MER2_type -1 343 1 1008 268 53 22 chr6 102563900 102564221 -86715333 - L1ME LINE L1 -533 5633 5303 1224 252 67 61 chr6 102564243 102564518 -86715036 - L1ME LINE L1 -905 5241 4960 2219 104 3 10 chr6 102564518 102564817 -86714737 - AluSx SINE Alu -15 297 1 1224 252 67 61 chr6 102564817 102565081 -86714473 - L1ME LINE L1 -1186 4960 4699 450 184 69 0 chr6 102565132 102565219 -86714335 + Charlie1a DNA MER1_type 55 147 -1308 2495 218 140 32 chr6 102565219 102565310 -86714244 + Charlie1a DNA MER1_type 493 573 -2188 2176 112 3 3 chr6 102565310 102565613 -86713941 + AluSq SINE Alu 1 303 -10 2495 218 140 32 chr6 102565613 102565678 -86713876 + Charlie1a DNA MER1_type 573 630 -2131 2119 124 0 3 chr6 102565678 102565969 -86713585 + AluSx SINE Alu 1 290 -22 2495 218 140 32 chr6 102565969 102566173 -86713381 + Charlie1a DNA MER1_type 630 811 -1950 2137 98 21 0 chr6 102566173 102566459 -86713095 - AluY SINE Alu -19 292 1 2495 218 140 32 chr6 102566459 102566965 -86712589 + Charlie1a DNA MER1_type 811 1455 0 1647 209 60 17 chr6 102567075 102567477 -86712077 + L1ME1 LINE L1 5745 6163 -3 1270 147 161 19 chr6 102567927 102568243 -86711311 - MER46B DNA MER2_type 0 236 1 620 267 123 30 chr6 102568558 102568794 -86710760 + MIR SINE MIR 5 262 0 1882 176 0 3 chr6 102569599 102569906 -86709648 + AluJb SINE Alu 1 306 -6 835 196 7 26 chr6 102571486 102571639 -86707915 - FRAM SINE Alu -22 154 5 320 285 126 26 chr6 102571762 102571913 -86707641 - MIR3 SINE MIR -28 180 15 697 218 0 15 chr6 102571966 102572099 -86707455 + FLAM_C SINE Alu 1 131 -2 839 196 80 30 chr6 102572411 102572610 -86706944 + MER3 DNA MER1_type 1 209 0 21 0 0 0 chr6 102572610 102572631 -86706923 + AT_rich Low_complexity Low_complexity 1 21 0 1496 170 73 67 chr6 102572844 102573185 -86706369 - MER2 DNA MER2_type 0 344 2 230 359 174 5 chr6 102575203 102575346 -86704208 + MIR SINE MIR 20 206 -56 2265 71 41 10 chr6 102575346 102575641 -86703913 + AluY SINE Alu 1 304 -7 230 359 174 5 chr6 102575641 102575692 -86703862 + MIR SINE MIR 206 247 -15 337 329 36 15 chr6 102575894 102576031 -86703523 + MER5A DNA MER1_type 35 174 -15 867 218 193 46 chr6 102576655 102577003 -86702551 + L2 LINE L2 2262 2660 -654 469 238 30 0 chr6 102577008 102577109 -86702445 + L2 LINE L2 3210 3313 0 213 261 46 15 chr6 102577526 102577591 -86701963 + L2 LINE L2 3246 3312 -1 182 300 0 0 chr6 102577856 102577896 -86701658 - L2 LINE L2 -18 3254 3215 300 328 48 43 chr6 102578938 102579125 -86700429 + MIR SINE MIR 35 219 -43 262 288 144 27 chr6 102581193 102581339 -86698215 - MIR SINE MIR -12 250 88 22 35 0 0 chr6 102581682 102581711 -86697843 + AT_rich Low_complexity Low_complexity 1 29 0 963 57 73 0 chr6 102581874 102581997 -86697557 + AluSg/x SINE Alu 167 298 -12 230 59 0 0 chr6 102582291 102582325 -86697229 + L1MB8 LINE L1 6144 6177 -1 1572 192 0 20 chr6 102582429 102582731 -86696823 + AluJb SINE Alu 1 296 -16 498 179 126 0 chr6 102583201 102583296 -86696258 - FRAM SINE Alu -32 144 38 2056 126 13 3 chr6 102584146 102584447 -86695107 + AluSq SINE Alu 1 304 -9 2211 117 0 3 chr6 102585442 102585740 -86693814 + AluSc SINE Alu 1 297 -12 2263 112 0 0 chr6 102585867 102586162 -86693392 - AluSx SINE Alu -17 295 1 1589 199 7 20 chr6 102587158 102587454 -86692100 - AluJo SINE Alu -20 292 1 372 94 0 0 chr6 102587510 102587563 -86691991 + (CA)n Simple_repeat Simple_repeat 2 54 0 1920 135 13 31 chr6 102587758 102588076 -86691478 + AluSx SINE Alu 1 312 0 259 298 21 11 chr6 102589772 102589866 -86689688 - MER5B DNA MER1_type -5 173 79 1703 112 155 0 chr6 102590128 102590403 -86689151 + AluSq SINE Alu 1 314 0 222 105 0 0 chr6 102591240 102591278 -86688276 + (T)n Simple_repeat Simple_repeat 1 38 0 258 264 91 27 chr6 102591800 102591910 -86687644 - L2 LINE L2 0 3272 3156 3387 58 7 0 chr6 102592909 102593325 -86686229 + L1PA8 LINE L1 5710 6128 -44 3124 122 26 10 chr6 102593325 102593815 -86685739 + LTR10D LTR ERV1 16 513 0 23 0 0 0 chr6 102593830 102593853 -86685701 + AT_rich Low_complexity Low_complexity 1 23 0 30 89 0 0 chr6 102594674 102594753 -86684801 + AT_rich Low_complexity Low_complexity 1 79 0 2279 118 0 0 chr6 102595582 102595888 -86683666 + AluSx SINE Alu 1 306 -6 1303 169 8 33 chr6 102596026 102596269 -86683285 + AluSg/x SINE Alu 76 312 0 225 0 0 0 chr6 102596271 102596296 -86683258 + (GA)n Simple_repeat Simple_repeat 2 26 0 309 287 20 10 chr6 102596296 102596397 -86683157 + L1MB7 LINE L1 5488 5589 -2219 2075 104 10 3 chr6 102596479 102596767 -86682787 - AluSc SINE Alu -19 290 1 1012 210 0 18 chr6 102596950 102597117 -86682437 - FRAM SINE Alu -2 164 1 2046 95 77 0 chr6 102597319 102597592 -86681962 + AluSc SINE Alu 1 294 -15 1528 160 22 15 chr6 102598101 102598369 -86681185 + AluJb SINE Alu 13 282 -30 572 257 76 0 chr6 102598480 102598624 -86680930 + MER5A DNA MER1_type 9 163 -26 183 42 0 0 chr6 102599225 102599249 -86680305 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 306 140 120 0 chr6 102599249 102599299 -86680255 - AluS SINE Alu -18 282 227 2384 97 0 0 chr6 102599303 102599603 -86679951 - AluSx SINE Alu -12 300 1 192 337 74 0 chr6 102601485 102601580 -86677974 + MIR SINE MIR 124 225 -37 23 0 0 0 chr6 102601659 102601682 -86677872 + AT_rich Low_complexity Low_complexity 1 23 0 714 180 111 13 chr6 102602221 102602461 -86677093 + L1MB7 LINE L1 5691 5885 -299 1958 155 0 0 chr6 102602529 102602832 -86676722 + AluSx SINE Alu 1 303 -9 1551 219 79 121 chr6 102602856 102603398 -86676156 + LTR8 LTR ERV1 1 564 -127 2163 123 0 0 chr6 102603398 102603698 -86675856 + AluSx SINE Alu 1 300 -12 1551 219 79 121 chr6 102603698 102603710 -86675844 + LTR8 LTR ERV1 564 575 -116 1788 169 17 0 chr6 102603710 102604005 -86675549 + AluSx SINE Alu 1 300 -12 1551 219 79 121 chr6 102604005 102604170 -86675384 + LTR8 LTR ERV1 575 691 0 619 168 0 19 chr6 102604573 102604680 -86674874 + FRAM SINE Alu 59 163 -13 1214 131 0 0 chr6 102605535 102605711 -86673843 + AluSp SINE Alu 136 311 -2 1848 132 3 45 chr6 102605889 102605992 -86673562 + AluJb SINE Alu 12 118 -194 1930 155 0 0 chr6 102605992 102606282 -86673272 - AluSq SINE Alu -23 290 1 1848 132 3 45 chr6 102606282 102606467 -86673087 + AluJb SINE Alu 118 288 -24 1135 61 88 0 chr6 102606549 102606697 -86672857 - L1PA6 LINE L1 0 6154 5994 204 40 0 0 chr6 102606714 102606739 -86672815 + (A)n Simple_repeat Simple_repeat 1 25 0 183 80 0 0 chr6 102607209 102607234 -86672320 + (GGA)n Simple_repeat Simple_repeat 1 25 0 1505 233 73 63 chr6 102607258 102607843 -86671711 + L1ME3 LINE L1 5488 6078 -84 2276 94 3 38 chr6 102607883 102608235 -86671319 + AluSg SINE Alu 2 342 0 497 66 0 0 chr6 102609190 102609251 -86670303 + Alu SINE Alu 2 62 -247 679 81 0 0 chr6 102609351 102609437 -86670117 + MER11A LTR ERVK 1181 1266 0 862 156 0 0 chr6 102609447 102609588 -86669966 + AluSg/x SINE Alu 164 304 -6 1935 122 4 11 chr6 102609614 102609892 -86669662 + AluSq SINE Alu 1 276 -37 197 32 0 32 chr6 102609895 102609926 -86669628 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 312 221 15 52 chr6 102610274 102610410 -86669144 + L1MC5 LINE L1 7598 7728 -233 715 167 83 0 chr6 102611445 102611565 -86667989 + FLAM_C SINE Alu 2 131 -2 1876 134 30 13 chr6 102611570 102611869 -86667685 + AluSx SINE Alu 4 307 -5 1574 177 7 52 chr6 102611893 102612203 -86667351 + AluJo SINE Alu 2 297 -15 2313 90 7 0 chr6 102612229 102612530 -86667024 + AluSg SINE Alu 1 303 -7 857 191 0 0 chr6 102612542 102612673 -86666881 + FLAM_A SINE Alu 1 131 -2 234 254 0 34 chr6 102613105 102613164 -86666390 - MIR SINE MIR -168 94 38 266 308 80 109 chr6 102613732 102614044 -86665510 - L2 LINE L2 -17 3255 2953 2431 82 0 0 chr6 102614426 102614731 -86664823 + AluSg SINE Alu 1 305 -5 798 194 32 7 chr6 102616146 102616301 -86663253 + FRAM SINE Alu 4 162 -4 2124 128 3 6 chr6 102616321 102616633 -86662921 + AluSq SINE Alu 1 311 -2 654 227 110 36 chr6 102616868 102617203 -86662351 + L1MC5 LINE L1 7572 7931 -30 852 159 0 0 chr6 102617272 102617398 -86662156 + FLAM_C SINE Alu 1 126 -17 2363 51 41 3 chr6 102617458 102617750 -86661804 - AluY SINE Alu -8 303 1 1243 108 11 0 chr6 102617752 102617938 -86661616 - LTR64 LTR ERVK -370 188 1 316 229 67 19 chr6 102618033 102618138 -86661416 - L1MC4a LINE L1 -1602 6206 6097 813 233 0 0 chr6 102618209 102618355 -86661199 + FRAM SINE Alu 1 146 -30 322 93 0 56 chr6 102618381 102618435 -86661119 + L1MB8 LINE L1 6128 6178 0 2323 85 0 13 chr6 102618444 102618744 -86660810 + AluSq SINE Alu 1 298 -15 180 0 0 0 chr6 102618744 102618764 -86660790 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 1568 171 0 54 chr6 102618805 102619120 -86660434 + AluJo SINE Alu 6 303 -9 2254 92 26 3 chr6 102619120 102619425 -86660129 + AluSq SINE Alu 1 313 0 1734 154 0 50 chr6 102619460 102619606 -86659948 + AluJo SINE Alu 1 124 -188 2191 115 0 3 chr6 102619606 102619910 -86659644 + AluSq SINE Alu 1 303 -10 1080 142 13 40 chr6 102619857 102620082 -86659472 + AluJb SINE Alu 85 303 -9 1734 154 0 50 chr6 102619910 102620082 -86659472 + AluJo SINE Alu 124 303 -9 180 244 0 0 chr6 102621303 102621344 -86658210 + L2 LINE L2 3246 3286 -27 702 239 31 27 chr6 102621686 102621908 -86657646 + MIR SINE MIR 40 262 0 1862 148 47 3 chr6 102622091 102622389 -86657165 - AluJb SINE Alu -1 311 1 2484 64 3 0 chr6 102622538 102622835 -86656719 - AluY SINE Alu -13 298 1 1941 106 0 4 chr6 102622840 102623094 -86656460 - AluSx SINE Alu -21 291 39 2320 107 0 3 chr6 102623415 102623724 -86655830 - AluSx SINE Alu -4 308 1 2413 79 7 7 chr6 102623724 102624027 -86655527 - AluSg SINE Alu -7 303 1 280 289 20 94 chr6 102624157 102624306 -86655248 - L2 LINE L2 -1 3271 3134 2100 120 0 3 chr6 102625026 102625317 -86654237 + AluSg SINE Alu 1 290 -20 1970 160 0 0 chr6 102626743 102627037 -86652517 - AluJb SINE Alu -18 294 1 2020 122 4 4 chr6 102628977 102629287 -86650267 + AluSg SINE Alu 1 310 0 806 128 8 0 chr6 102629901 102630018 -86649536 + FLAM_C SINE Alu 1 118 -25 45 19 0 0 chr6 102630020 102630072 -86649482 + AT_rich Low_complexity Low_complexity 1 52 0 21 71 0 0 chr6 102631056 102631098 -86648456 + AT_rich Low_complexity Low_complexity 1 42 0 693 201 0 8 chr6 102631396 102631530 -86648024 + FLAM_C SINE Alu 1 133 0 248 216 227 41 chr6 102631617 102631714 -86647840 + L2 LINE L2 3186 3300 -13 200 368 0 0 chr6 102631815 102631883 -86647671 - MIR SINE MIR -102 106 39 2208 107 3 0 chr6 102632865 102633175 -86646379 + AluY SINE Alu 1 311 0 1220 166 40 72 chr6 102633877 102633988 -86645566 + AluJb SINE Alu 25 138 -174 2162 119 0 13 chr6 102633988 102634290 -86645264 + AluSg SINE Alu 1 298 -12 1220 166 40 72 chr6 102634290 102634456 -86645098 + AluJb SINE Alu 138 293 -19 2298 105 0 0 chr6 102635707 102636003 -86643551 + AluSq SINE Alu 1 296 -17 2180 117 0 0 chr6 102636014 102636305 -86643249 + AluSx SINE Alu 1 291 -21 3001 167 36 61 chr6 102636664 102637103 -86642451 + L1MA7 LINE L1 5600 6016 -275 2436 72 0 20 chr6 102637103 102637408 -86642146 + AluY SINE Alu 1 299 -12 3001 167 36 61 chr6 102637408 102637668 -86641886 + L1MA7 LINE L1 6016 6281 -10 24 0 0 0 chr6 102637673 102637697 -86641857 + AT_rich Low_complexity Low_complexity 1 24 0 325 180 90 40 chr6 102638158 102638258 -86641296 - MIR SINE MIR -58 204 100 1738 175 13 7 chr6 102638997 102639300 -86640254 + AluJb SINE Alu 1 305 -7 374 158 0 119 chr6 102639574 102639675 -86639879 + MER106B DNA MER1_type 61 149 -910 1623 193 0 4 chr6 102640157 102640431 -86639123 + AluJo SINE Alu 1 273 -39 203 276 190 9 chr6 102640431 102640547 -86639007 - L2 LINE L2 0 3313 3177 1321 179 5 5 chr6 102640547 102640765 -86638789 + AluJb SINE Alu 1 218 -94 292 310 68 42 chr6 102640773 102641115 -86638439 - L2 LINE L2 -178 3135 2751 249 235 59 0 chr6 102641121 102641189 -86638365 + FLAM SINE Alu 55 126 -7 2056 77 11 7 chr6 102641201 102641474 -86638080 + AluY SINE Alu 1 274 -37 201 359 152 7 chr6 102641510 102641655 -86637899 - L2 LINE L2 -597 2717 2552 789 173 0 0 chr6 102641711 102641838 -86637716 - FLAM_C SINE Alu -6 127 1 734 261 90 5 chr6 102641900 102642111 -86637443 + MIR SINE MIR 12 240 -22 2078 125 0 13 chr6 102642237 102642540 -86637014 + AluSx SINE Alu 1 299 -13 333 257 0 9 chr6 102643435 102643540 -86636014 + L1MEc LINE L1 2329 2432 -3964 1985 123 14 3 chr6 102643699 102643984 -86635570 + AluSq SINE Alu 1 288 -25 1703 138 48 24 chr6 102643988 102644279 -86635275 + AluJb SINE Alu 1 298 -14 1524 176 3 46 chr6 102644313 102644408 -86635146 + AluJo SINE Alu 1 99 -213 2540 97 22 11 chr6 102644408 102644768 -86634786 + THE1B LTR MaLR 1 364 0 1524 176 3 46 chr6 102644768 102644974 -86634580 + AluJo SINE Alu 99 289 -23 25 0 0 0 chr6 102644977 102645002 -86634552 + AT_rich Low_complexity Low_complexity 1 25 0 2281 74 14 0 chr6 102645140 102645425 -86634129 - AluSp SINE Alu -24 289 1 2275 110 3 3 chr6 102645456 102645766 -86633788 + AluSx SINE Alu 1 310 -2 785 211 34 0 chr6 102645767 102645914 -86633640 + AluJo/FRAM SINE Alu 131 282 -30 989 166 9 113 chr6 102646003 102646232 -86633322 + AluJo SINE Alu 19 223 -89 1704 127 79 70 chr6 102646272 102646574 -86632980 + MER4D LTR ERV1 3 310 -593 801 152 0 36 chr6 102646574 102646712 -86632842 - FLAM_C SINE Alu 0 133 1 1704 127 79 70 chr6 102646712 102646764 -86632790 + MER4D LTR ERV1 310 360 -543 2206 99 0 0 chr6 102648305 102648587 -86630967 + AluSx SINE Alu 1 282 -30 648 159 19 0 chr6 102648644 102648751 -86630803 + FLAM_C SINE Alu 14 122 -21 890 67 0 0 chr6 102648851 102648955 -86630599 - AluSc SINE Alu -201 108 5 532 40 0 15 chr6 102649110 102649187 -86630367 + pTR5 LTR ERV1 197 2020 -418 369 220 36 54 chr6 102649192 102649303 -86630251 + LTR30 LTR ERV1 372 642 -80 2133 92 16 10 chr6 102649303 102649607 -86629947 + pTR5 LTR ERV1 79 384 -2054 1520 184 37 32 chr6 102649610 102649958 -86629596 + L1MB7 LINE L1 5835 6184 0 1539 179 144 52 chr6 102649966 102650076 -86629478 + L1MD2 LINE L1 5821 5919 -440 2162 136 3 0 chr6 102650076 102650384 -86629170 - AluSx SINE Alu -3 309 1 1564 181 62 4 chr6 102650387 102650663 -86628891 - AluJo SINE Alu -20 292 1 1539 179 144 52 chr6 102650663 102651027 -86628527 + L1MD2 LINE L1 5920 6343 -16 1752 137 12 4 chr6 102651128 102651383 -86628171 - AluSx SINE Alu -55 257 1 511 264 149 7 chr6 102651820 102652069 -86627485 + LTR35 LTR ERV1 403 618 0 615 207 18 0 chr6 102652296 102652407 -86627147 - AluJb SINE Alu -20 292 180 1206 134 0 0 chr6 102652508 102652680 -86626874 + AluSg/x SINE Alu 140 311 -1 785 197 22 28 chr6 102652687 102652865 -86626689 + MLT1C LTR MaLR 291 467 0 220 333 24 0 chr6 102652866 102652950 -86626604 + MIR SINE MIR 160 245 -17 447 275 52 67 chr6 102653835 102654028 -86625526 + MLT1L LTR MaLR 1 190 -425 237 267 0 0 chr6 102654036 102654096 -86625458 + MLT1L LTR MaLR 550 609 -6 2059 135 0 22 chr6 102654357 102654675 -86624879 - AluSx SINE Alu -1 311 1 2111 246 40 18 chr6 102654804 102655198 -86624356 - L1M4 LINE L1 -2499 3647 3263 2594 148 39 2 chr6 102655198 102655609 -86623945 - MSTB LTR MaLR 0 426 1 2111 246 40 18 chr6 102655609 102655801 -86623753 - L1M4 LINE L1 -2883 3263 3041 2305 110 3 0 chr6 102655801 102656110 -86623444 - AluSq SINE Alu -3 310 1 2111 246 40 18 chr6 102656110 102656205 -86623349 - L1M4 LINE L1 -3105 3041 2950 855 100 0 0 chr6 102656306 102656416 -86623138 - AluSq/x SINE Alu -203 110 1 914 197 66 82 chr6 102656420 102656530 -86623024 - MLT1C LTR MaLR -167 300 190 2253 120 0 0 chr6 102656530 102656839 -86622715 - AluSg SINE Alu -1 309 1 914 197 66 82 chr6 102656839 102657033 -86622521 - MLT1C LTR MaLR -277 190 1 415 218 0 0 chr6 102657035 102657122 -86622432 - MIR SINE MIR -101 161 75 1188 161 16 63 chr6 102657795 102658050 -86621504 - AluJo SINE Alu -3 309 67 2502 62 0 3 chr6 102658196 102658504 -86621050 + AluY SINE Alu 1 307 -4 950 119 26 17 chr6 102658516 102658765 -86620789 + LTR64 LTR ERVK 201 514 -44 1164 128 41 0 chr6 102658766 102658938 -86620616 - AluSg/x SINE Alu -22 288 110 708 86 11 0 chr6 102658945 102659038 -86620516 + AluSg/x SINE Alu 95 188 -124 449 213 48 100 chr6 102659116 102659325 -86620229 - MER34C LTR ERV1 -351 234 1 * 1643 180 28 37 chr6 102659325 102659650 -86619904 - MLT1A2 LTR MaLR -48 326 5 365 263 59 20 chr6 102659657 102659809 -86619745 - L1MC5 LINE L1 -447 7514 7357 1957 135 0 7 chr6 102659827 102660109 -86619445 + AluSx SINE Alu 1 280 -32 444 19 0 0 chr6 102661021 102661074 -86618480 + (CA)n Simple_repeat Simple_repeat 2 54 0 252 0 0 0 chr6 102661133 102661161 -86618393 + (T)n Simple_repeat Simple_repeat 1 28 0 671 168 0 0 chr6 102662459 102662572 -86616982 + AluSg/x SINE Alu 197 309 0 1417 188 68 20 chr6 102662904 102663197 -86616357 + AluJb SINE Alu 5 311 -1 1387 189 28 45 chr6 102663505 102663834 -86615720 + AluJb SINE Alu 1 324 0 1163 101 0 0 chr6 102663850 102663999 -86615555 + AluSc SINE Alu 1 149 -160 3655 51 45 6 chr6 102664000 102664561 -86614993 + MER11A LTR ERVK 1 809 -457 243 243 14 14 chr6 102664667 102664737 -86614817 - L1MCa LINE L1 -3239 3187 3118 1404 180 0 4 chr6 102664798 102665031 -86614523 - AluJo SINE Alu -80 232 1 705 249 32 32 chr6 102665035 102665220 -86614334 - L1MCa LINE L1 -3318 3108 2924 2447 71 0 10 chr6 102665222 102665531 -86614023 - AluY SINE Alu -5 306 1 429 235 0 0 chr6 102665545 102665630 -86613924 - AluJo SINE Alu -167 135 51 2233 189 22 80 chr6 102665632 102666037 -86613517 - L1MCa LINE L1 -3492 2934 2507 2450 48 41 0 chr6 102666037 102666331 -86613223 - AluY SINE Alu -5 306 1 2233 189 22 80 chr6 102666331 102666370 -86613184 - L1MCa LINE L1 -3919 2507 2467 1566 164 3 69 chr6 102666370 102666537 -86613017 - AluJb SINE Alu -11 301 163 2442 86 0 0 chr6 102666537 102666840 -86612714 - AluSq SINE Alu -2 311 9 1566 164 3 69 chr6 102666840 102666990 -86612564 - AluJb SINE Alu -149 163 5 2233 189 22 80 chr6 102666990 102667204 -86612350 - L1MCa LINE L1 -3959 2467 2242 2250 109 3 19 chr6 102667204 102667515 -86612039 - AluSx SINE Alu -5 307 2 2233 189 22 80 chr6 102667515 102667529 -86612025 - L1MCa LINE L1 -4184 2242 2229 2232 100 0 19 chr6 102667529 102667839 -86611715 - AluSg SINE Alu -6 304 1 2233 189 22 80 chr6 102667839 102668303 -86611251 - L1MCa LINE L1 -4197 2229 1675 1874 168 20 0 chr6 102668303 102668601 -86610953 - AluSx SINE Alu -6 306 3 2233 189 22 80 chr6 102668601 102668710 -86610844 - L1MCa LINE L1 -4751 1675 1561 865 158 0 0 chr6 102668894 102669027 -86610527 + FLAM_C SINE Alu 1 133 0 189 0 0 0 chr6 102669640 102669661 -86609893 + (TAA)n Simple_repeat Simple_repeat 2 22 0 479 172 60 0 chr6 102669901 102670035 -86609519 + CT-rich Low_complexity Low_complexity 3 144 0 2439 53 0 13 chr6 102670055 102670356 -86609198 - AluY SINE Alu -14 297 1 236 111 0 0 chr6 102670359 102670395 -86609159 - MER5B DNA MER1_type -137 41 6 893 194 0 0 chr6 102670735 102670890 -86608664 - FRAM SINE Alu -9 167 13 615 266 233 10 chr6 102670899 102671484 -86608070 - L2 LINE L2 -15 3298 2578 203 179 0 0 chr6 102671565 102671604 -86607950 + A-rich Low_complexity Low_complexity 3 41 0 2020 113 30 0 chr6 102671783 102672085 -86607469 - AluSx SINE Alu -1 311 1 23 0 0 0 chr6 102672087 102672110 -86607444 + AT_rich Low_complexity Low_complexity 1 23 0 729 130 23 0 chr6 102672110 102672241 -86607313 - L1MA4A LINE L1 -5 6298 6165 2403 42 7 19 chr6 102672552 102672862 -86606692 + AluY SINE Alu 1 306 -5 248 303 82 16 chr6 102672929 102673051 -86606503 + L1ME LINE L1 5528 5657 -464 1656 161 0 11 chr6 102673062 102673347 -86606207 + AluJb SINE Alu 1 282 -30 1757 172 3 3 chr6 102673743 102674040 -86605514 - AluJb SINE Alu -15 297 1 969 150 13 167 chr6 102674116 102674237 -86605317 + AluJo SINE Alu 34 81 -231 1874 129 0 32 chr6 102674237 102674546 -86605008 + AluSx SINE Alu 1 299 -13 969 150 13 167 chr6 102674546 102674730 -86604824 + AluJo SINE Alu 81 292 -20 383 242 133 8 chr6 102674767 102674884 -86604670 - L1M4 LINE L1 -1808 4338 4202 1704 148 20 0 chr6 102674884 102675182 -86604372 - AluJb SINE Alu -2 310 7 787 294 104 16 chr6 102675196 102675775 -86603779 - L1ME LINE L1 -4814 1582 953 388 172 0 91 chr6 102675783 102675882 -86603672 - FLAM_A SINE Alu -1 132 43 375 277 161 17 chr6 102675886 102676125 -86603429 - L1ME LINE L1 -5311 894 664 * 585 279 157 50 chr6 102676103 102676737 -86602817 - L1ME LINE L1 -5662 734 26 2064 120 3 0 chr6 102676737 102677045 -86602509 + AluJb SINE Alu 1 309 -3 585 279 157 50 chr6 102677045 102677067 -86602487 - L1ME LINE L1 -6370 26 8 1736 146 0 62 chr6 102677162 102677296 -86602258 + AluJb SINE Alu 12 153 -159 1850 153 0 0 chr6 102677296 102677650 -86601904 + AluSx SINE Alu 1 354 0 1736 146 0 62 chr6 102677650 102677835 -86601719 + AluJb SINE Alu 153 312 0 1392 217 67 64 chr6 102677905 102677965 -86601589 - MLT1C LTR MaLR 0 467 409 2209 113 0 0 chr6 102677965 102678275 -86601279 + AluSx SINE Alu 1 310 -2 1392 217 67 64 chr6 102678275 102678528 -86601026 - MLT1C LTR MaLR -58 409 150 1723 128 35 0 chr6 102678528 102678786 -86600768 + AluSx SINE Alu 2 268 -44 1392 217 67 64 chr6 102678786 102678937 -86600617 - MLT1C LTR MaLR -317 150 1 852 153 0 0 chr6 102679327 102679464 -86600090 + AluSp/q SINE Alu 157 293 -20 1925 147 3 0 chr6 102679528 102679834 -86599720 - AluJb SINE Alu -5 307 1 1670 134 0 101 chr6 102679943 102680271 -86599283 + AluSx SINE Alu 1 295 -17 1566 195 3 3 chr6 102680508 102680810 -86598744 - AluJo SINE Alu -10 302 1 2055 119 10 0 chr6 102681117 102681411 -86598143 + AluSg SINE Alu 1 297 -13 210 37 0 0 chr6 102681950 102681977 -86597577 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2191 87 7 7 chr6 102681980 102682280 -86597274 - AluSq SINE Alu -13 300 1 2241 74 0 0 chr6 102682288 102682615 -86596939 - AluY SINE Alu 0 327 1 2164 106 0 0 chr6 102682717 102683010 -86596544 - AluSx SINE Alu -19 293 1 252 0 0 0 chr6 102683028 102683056 -86596498 + (CA)n Simple_repeat Simple_repeat 2 29 0 687 231 15 15 chr6 102683057 102683252 -86596302 - L1MC4 LINE L1 -122 7920 7726 376 280 76 101 chr6 102683265 102683665 -86595889 - L1ME LINE L1 -3959 2121 1771 2032 99 3 40 chr6 102683665 102683989 -86595565 + AluSx SINE Alu 1 312 0 376 280 76 101 chr6 102683989 102684127 -86595427 - L1ME LINE L1 -4309 1771 1631 635 231 160 13 chr6 102684146 102684404 -86595150 - L1ME LINE L1 -4984 1086 808 1753 153 0 17 chr6 102684431 102684726 -86594828 - AluJb SINE Alu -22 290 1 1082 285 114 29 chr6 102684735 102685321 -86594233 - L1ME LINE L1 -5433 637 2 1218 180 155 0 chr6 102685341 102685586 -86593968 - AluJo SINE Alu -19 283 1 1831 139 0 7 chr6 102685730 102686017 -86593537 - AluSx SINE Alu -27 285 1 820 158 0 0 chr6 102686018 102686151 -86593403 - AluJo/FLAM SINE Alu -179 133 1 2277 80 0 7 chr6 102686649 102686949 -86592605 - AluSc SINE Alu -11 298 1 895 120 0 0 chr6 102687083 102687208 -86592346 - AluY SINE Alu -186 125 1 2140 126 14 31 chr6 102687208 102687557 -86591997 + MER4E LTR ERV1 437 779 0 258 284 60 0 chr6 102687589 102687656 -86591898 - L2 LINE L2 -1 3271 3201 198 343 80 36 chr6 102687740 102687877 -86591677 - L2 LINE L2 -216 3056 2914 714 222 82 31 chr6 102688028 102688222 -86591332 - MER20 DNA MER1_type 0 219 16 2198 103 0 10 chr6 102688270 102688582 -86590972 + AluSx SINE Alu 1 309 -3 727 178 0 0 chr6 102688586 102688715 -86590839 + FLAM_C SINE Alu 1 129 -4 2282 50 3 0 chr6 102688775 102689057 -86590497 + AluSc SINE Alu 12 294 -15 232 376 62 25 chr6 102689177 102689339 -86590215 + L2 LINE L2 3095 3262 -10 2039 80 10 17 chr6 102690309 102690609 -86588945 + AluSx SINE Alu 1 298 -14 1391 174 15 26 chr6 102690656 102690920 -86588634 - MER50 LTR ERV1 -41 693 433 1039 145 100 15 chr6 102690914 102691114 -86588440 - MER50 LTR ERV1 -505 229 13 * 266 185 15 15 chr6 102691118 102691183 -86588371 + L1ME LINE L1 5617 5681 -440 668 92 229 0 chr6 102691322 102691431 -86588123 + AluSg SINE Alu 2 135 -175 2152 92 0 0 chr6 102691431 102691713 -86587841 + AluSp SINE Alu 1 282 -31 2237 94 10 0 chr6 102691737 102692045 -86587509 + AluSq SINE Alu 1 311 -2 416 233 0 78 chr6 102692063 102692192 -86587362 + HAL1 LINE L1 1674 1792 -715 1940 112 0 65 chr6 102692419 102692552 -86587002 + AluSg SINE Alu 1 141 -169 2321 85 0 0 chr6 102692552 102692857 -86586697 + AluSx SINE Alu 1 305 -7 1940 112 0 65 chr6 102692857 102693044 -86586510 + AluSg SINE Alu 141 300 -10 278 217 40 79 chr6 102693052 102693148 -86586406 + L1MC5 LINE L1 7782 7871 -90 2163 106 0 25 chr6 102693148 102693468 -86586086 - AluSx SINE Alu 0 312 1 278 217 40 79 chr6 102693468 102693523 -86586031 + L1MC5 LINE L1 7871 7927 -34 462 226 20 0 chr6 102693532 102693634 -86585920 + U13 snRNA snRNA 1 104 0 1347 183 50 21 chr6 102693650 102693788 -86585766 - AluJo SINE Alu -25 287 154 1949 128 0 34 chr6 102693788 102694108 -86585446 - AluSx SINE Alu -3 309 1 1347 183 50 21 chr6 102694108 102694248 -86585306 - AluJo SINE Alu -158 154 1 616 241 65 74 chr6 102694347 102694671 -86584883 + L1MC5 LINE L1 6834 7154 -807 2310 70 7 0 chr6 102694675 102694973 -86584581 + AluY SINE Alu 7 306 -5 1720 163 0 3 chr6 102695097 102695386 -86584168 + AluJb SINE Alu 12 299 -13 2109 70 3 14 chr6 102695387 102695706 -86583848 + AluY SINE Alu 1 316 0 1765 241 34 64 chr6 102695706 102695774 -86583780 + L1M4 LINE L1 3779 3848 -2298 2080 128 0 0 chr6 102695774 102696072 -86583482 + AluSx SINE Alu 1 298 -14 1765 241 34 64 chr6 102696072 102696376 -86583178 + L1M4 LINE L1 3848 4160 -1986 180 111 0 0 chr6 102696376 102696403 -86583151 + (CAAGA)n Simple_repeat Simple_repeat 2 28 0 1765 241 34 64 chr6 102696403 102696504 -86583050 + L1M4 LINE L1 4160 4263 -1883 2223 99 0 3 chr6 102696504 102696808 -86582746 + AluSx SINE Alu 6 308 -4 1765 241 34 64 chr6 102696808 102696955 -86582599 + L1M4 LINE L1 4263 4382 -1764 1981 102 28 3 chr6 102696955 102697239 -86582315 + AluSx SINE Alu 1 291 -21 340 97 32 0 chr6 102697240 102697302 -86582252 + (TA)n Simple_repeat Simple_repeat 1 64 0 529 118 32 0 chr6 102697338 102697431 -86582123 + L1MC1 LINE L1 5341 5436 -908 630 85 0 0 chr6 102697435 102697517 -86582037 + AluS SINE Alu 1 82 -230 5248 140 29 6 chr6 102697517 102698384 -86581170 + L1MC1 LINE L1 5436 6322 -11 2248 93 10 0 chr6 102698712 102699013 -86580541 + AluSc SINE Alu 1 304 -5 2352 68 0 3 chr6 102699195 102699503 -86580051 + AluY SINE Alu 1 307 -4 804 87 0 0 chr6 102699637 102699741 -86579813 + HY1 scRNA scRNA 1 104 -8 365 85 0 17 chr6 102699741 102699800 -86579754 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 426 160 0 0 chr6 102699900 102699994 -86579560 - L1M1 LINE L1 -811 6194 6101 1126 236 40 0 chr6 102699997 102700272 -86579282 - AluJo SINE Alu -4 308 23 15575 160 57 17 chr6 102700289 102701648 -86577906 - L1M1 LINE L1 -3001 3847 2544 1696 181 0 6 chr6 102701648 102701962 -86577592 - AluJb SINE Alu 0 312 1 15575 160 57 17 chr6 102701962 102704300 -86575254 - L1M1 LINE L1 -4304 2544 3 320 267 148 5 chr6 102704335 102704545 -86575009 - L1MC4a LINE L1 -1897 5911 5672 1983 132 0 0 chr6 102704623 102704910 -86574644 - AluSx SINE Alu -25 287 1 841 209 0 6 chr6 102704912 102705084 -86574470 - FRAM SINE Alu -11 165 1 368 323 145 0 chr6 102705086 102705368 -86574186 - L1MC4a LINE L1 -2213 5595 5273 863 147 49 25 chr6 102705553 102705716 -86573838 - FRAM SINE Alu -9 167 1 228 224 104 30 chr6 102705925 102705956 -86573598 - MIR SINE MIR -65 143 116 2286 75 0 0 chr6 102705956 102706251 -86573303 + AluSc SINE Alu 1 295 -14 228 224 104 30 chr6 102706251 102706286 -86573268 - MIR SINE MIR -92 116 72 204 260 0 0 chr6 102706289 102706339 -86573215 + L2 LINE L2 3217 3266 -6 1504 93 42 13 chr6 102707711 102707947 -86571607 - AluSq SINE Alu -70 243 1 1464 183 3 40 chr6 102708420 102708742 -86570812 - AluJb SINE Alu -2 310 1 210 288 137 62 chr6 102708775 102708921 -86570633 - MIR SINE MIR -57 205 49 234 350 136 0 chr6 102708990 102709093 -86570461 + L2 LINE L2 3109 3225 -47 1947 121 20 0 chr6 102709334 102709631 -86569923 + AluSc SINE Alu 1 303 -6 964 182 18 0 chr6 102709637 102709807 -86569747 + FAM SINE Alu 1 173 -2 2097 131 6 29 chr6 102710516 102710859 -86568695 - MER1B DNA MER1_type -2 335 1 186 143 0 29 chr6 102711129 102711164 -86568390 + L2 LINE L2 3029 3062 -210 1543 184 88 0 chr6 102711495 102711815 -86567739 + MER7A DNA MER2_type 1 346 0 600 163 141 22 chr6 102711910 102712045 -86567509 - L1MD2 LINE L1 -2 6357 6207 198 0 0 0 chr6 102713860 102713882 -86565672 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 234 0 0 0 chr6 102715272 102715298 -86564256 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 294 39 58 0 chr6 102715617 102715669 -86563885 + (TA)n Simple_repeat Simple_repeat 2 56 0 2419 132 40 2 chr6 102716990 102717385 -86562169 + L1MC1 LINE L1 5914 6323 -10 1684 148 6 46 chr6 102717386 102717710 -86561844 + AluJb SINE Alu 1 311 -1 2084 117 7 3 chr6 102718060 102718359 -86561195 + AluSx SINE Alu 1 300 -12 24 77 0 0 chr6 102718657 102718709 -86560845 + AT_rich Low_complexity Low_complexity 1 52 0 457 247 108 131 chr6 102719749 102720004 -86559550 - L2 LINE L2 -11 3261 3015 826 150 0 0 chr6 102720004 102720124 -86559430 - FLAM_C SINE Alu -13 120 1 457 247 108 131 chr6 102720124 102720212 -86559342 - L2 LINE L2 -257 3015 2926 186 43 0 0 chr6 102720395 102720418 -86559136 + (CAA)n Simple_repeat Simple_repeat 2 24 0 687 249 122 5 chr6 102720994 102721215 -86558339 + MIR SINE MIR 13 259 -3 1953 140 0 3 chr6 102721221 102721513 -86558041 - AluSx SINE Alu -21 291 1 207 69 0 0 chr6 102721637 102721666 -86557888 + (CA)n Simple_repeat Simple_repeat 2 30 0 411 274 86 0 chr6 102722551 102722668 -86556886 + MIR SINE MIR 25 151 -57 1643 214 74 53 chr6 102722726 102723184 -86556370 + MLT1F LTR MaLR 60 533 -9 1579 133 38 148 chr6 102723345 102723684 -86555870 - AluJb SINE Alu 0 302 1 2072 136 3 0 chr6 102723691 102723992 -86555562 - AluSx SINE Alu -10 302 1 1483 194 38 13 chr6 102724354 102724668 -86554886 - MER33 DNA MER1_type 0 324 3 915 139 0 0 chr6 102726663 102726792 -86552762 - FLAM_C SINE Alu -3 130 2 34 79 0 0 chr6 102727082 102727158 -86552396 + AT_rich Low_complexity Low_complexity 1 76 0 224 275 34 94 chr6 102727797 102727946 -86551608 + MIR SINE MIR 47 186 -76 186 133 0 0 chr6 102728348 102728378 -86551176 + (TC)n Simple_repeat Simple_repeat 1 30 0 2954 169 23 71 chr6 102728633 102729295 -86550259 + L1MB7 LINE L1 5429 6058 -126 1677 106 22 55 chr6 102729396 102729671 -86549883 + AluSx SINE Alu 36 301 -11 1663 179 23 10 chr6 102730482 102730784 -86548770 + AluJo SINE Alu 3 308 -4 1955 108 7 55 chr6 102731310 102731617 -86547937 - AluSx SINE Alu -18 294 3 285 197 61 0 chr6 102731804 102731870 -86547684 + MIR SINE MIR 104 173 -89 1790 169 0 29 chr6 102732206 102732519 -86547035 - AluJo SINE Alu -8 304 1 1020 118 0 0 chr6 102732546 102732681 -86546873 + AluSq/x SINE Alu 1 135 -177 2331 91 0 7 chr6 102732682 102732990 -86546564 + AluSx SINE Alu 1 306 -6 1534 219 28 37 chr6 102732990 102733004 -86546550 + L1MCa LINE L1 2274 2287 -4139 2216 113 3 19 chr6 102733004 102733315 -86546239 + AluSx SINE Alu 2 307 -5 1534 219 28 37 chr6 102733315 102733528 -86546026 + L1MCa LINE L1 2287 2500 -3926 1632 154 3 69 chr6 102733528 102733678 -86545876 + AluJb SINE Alu 5 124 -188 2347 67 20 3 chr6 102733678 102733975 -86545579 + AluSx SINE Alu 9 310 -2 1632 154 3 69 chr6 102733975 102734143 -86545411 + AluJb SINE Alu 124 302 -10 1534 219 28 37 chr6 102734143 102734181 -86545373 + L1MCa LINE L1 2500 2537 -3889 2418 48 41 0 chr6 102734181 102734475 -86545079 + AluY SINE Alu 1 306 -5 1534 219 28 37 chr6 102734475 102734877 -86544677 + L1MCa LINE L1 2537 2931 -3495 430 244 22 0 chr6 102734877 102734967 -86544587 + AluJo SINE Alu 44 135 -177 2421 71 0 10 chr6 102734981 102735290 -86544264 + AluY SINE Alu 1 306 -5 716 249 32 32 chr6 102735292 102735477 -86544077 + L1MCa LINE L1 2924 3108 -3318 1404 180 0 4 chr6 102735481 102735714 -86543840 + AluJo SINE Alu 1 232 -80 1277 80 11 23 chr6 102736099 102736274 -86543280 - AluSc SINE Alu -136 173 1 2046 78 35 85 chr6 102736275 102736447 -86543107 - AluSx SINE Alu -7 305 155 2324 78 7 0 chr6 102736447 102736741 -86542813 - AluSx SINE Alu -16 296 1 2046 78 35 85 chr6 102736741 102736887 -86542667 - AluSx SINE Alu -157 155 3 1806 132 16 64 chr6 102736889 102737200 -86542354 - AluSx SINE Alu -16 296 1 1526 188 45 79 chr6 102737297 102737701 -86541853 - MLT1B LTR MaLR 0 390 1 2038 151 7 0 chr6 102737898 102738203 -86541351 + AluJo SINE Alu 1 307 -5 1726 167 3 44 chr6 102738728 102739045 -86540509 - AluJb SINE Alu -8 304 1 2123 113 3 7 chr6 102739083 102739367 -86540187 - AluSx SINE Alu -29 283 1 22 35 0 0 chr6 102739424 102739453 -86540101 + AT_rich Low_complexity Low_complexity 1 29 0 2231 104 0 13 chr6 102741849 102742156 -86537398 - AluSg SINE Alu -7 303 1 1978 124 33 0 chr6 102742165 102742464 -86537090 - AluSc SINE Alu 0 309 1 2011 129 0 10 chr6 102742502 102742796 -86536758 + AluSg SINE Alu 1 291 -19 2448 70 0 3 chr6 102742862 102743163 -86536391 + AluY SINE Alu 1 300 -11 1001 123 0 7 chr6 102746482 102746620 -86532934 + AluJb SINE Alu 1 137 -175 2291 98 10 0 chr6 102746620 102746927 -86532627 + AluY SINE Alu 1 310 -1 1387 154 9 72 chr6 102746929 102747248 -86532306 + AluY SINE Alu 1 299 -12 225 65 0 0 chr6 102747642 102747673 -86531881 + HSMAR1 DNA Mariner 1257 1287 0 1367 87 56 15 chr6 102747727 102747953 -86531601 - AluSp SINE Alu 0 313 85 185 267 11 111 chr6 102748253 102748343 -86531211 + MIR SINE MIR 17 97 -111 632 174 68 38 chr6 102748793 102748925 -86530629 + AluJb SINE Alu 2 137 -175 1563 194 17 0 chr6 102748926 102749220 -86530334 + AluJo SINE Alu 5 303 -9 1027 178 0 0 chr6 102749272 102749441 -86530113 - AluSg/x SINE Alu -19 291 123 2282 114 3 0 chr6 102749681 102749988 -86529566 - AluSq SINE Alu -5 308 1 305 169 89 145 chr6 102750003 102750057 -86529497 - L1 LINE L1 -2805 3341 3286 2075 113 7 10 chr6 102750057 102750359 -86529195 - AluSx SINE Alu -11 301 1 305 169 89 145 chr6 102750359 102750428 -86529126 - L1 LINE L1 -2860 3286 3225 920 195 74 0 chr6 102750438 102750628 -86528926 - AluJo SINE Alu -26 286 83 316 258 133 33 chr6 102750726 102750846 -86528708 + L2 LINE L2 3138 3269 -3 237 86 0 0 chr6 102751113 102751148 -86528406 - Tigger5 DNA MER2_type -52 2271 2237 849 129 0 50 chr6 102752460 102752600 -86526954 - FLAM_C SINE Alu -10 133 1 1409 110 5 37 chr6 102753029 102753247 -86526307 - AluSg SINE Alu -54 256 46 258 232 43 14 chr6 102753355 102753424 -86526130 - L1ME3A LINE L1 -13 6157 6087 2364 80 0 3 chr6 102753863 102754164 -86525390 + AluY SINE Alu 1 300 -11 928 196 49 0 chr6 102757631 102757815 -86521739 - AluSp SINE Alu -36 277 85 189 267 11 111 chr6 102758115 102758205 -86521349 + MIR SINE MIR 17 97 -111 632 174 68 38 chr6 102758655 102758787 -86520767 + AluJb SINE Alu 2 137 -175 1563 194 17 0 chr6 102758788 102759082 -86520472 + AluJo SINE Alu 5 303 -9 1027 178 0 0 chr6 102759134 102759303 -86520251 - AluSg/x SINE Alu -19 293 125 346 153 0 42 chr6 102759543 102759615 -86519939 + Alu SINE Alu 234 302 0 2040 95 37 0 chr6 102760517 102760817 -86518737 + AluSq SINE Alu 1 310 0 194 244 160 34 chr6 102761067 102761186 -86518368 - L3 LINE CR1 -226 1351 1218 279 239 161 71 chr6 102761338 102761493 -86518061 + L2 LINE L2 3104 3272 0 1988 259 109 34 chr6 102762706 102763751 -86515803 + L2 LINE L2 2170 3312 -1 568 328 83 28 chr6 102763750 102764076 -86515478 - L2 LINE L2 -15 3257 2914 * 298 206 0 15 chr6 102764131 102764199 -86515355 - MSTD LTR MaLR 0 457 391 353 134 0 15 chr6 102764199 102764266 -86515288 + (GGGA)n Simple_repeat Simple_repeat 3 68 0 981 162 60 5 chr6 102764356 102764541 -86515013 - MSTD LTR MaLR -201 195 1 783 297 14 40 chr6 102764593 102764889 -86514665 + L2 LINE L2 2371 2658 -656 1719 152 19 39 chr6 102765240 102765550 -86514004 + AluJb SINE Alu 1 304 -8 269 297 42 42 chr6 102765703 102766033 -86513521 + L1MC4a LINE L1 2972 3301 -2845 1012 277 81 106 chr6 102766147 102768055 -86511499 + L1MC4a LINE L1 3714 5668 -478 2131 113 0 0 chr6 102768055 102768346 -86511208 + AluY SINE Alu 1 291 -20 1012 277 81 106 chr6 102768346 102768681 -86510873 + L1MC4a LINE L1 5668 5248 -898 2251 97 7 10 chr6 102768681 102768980 -86510574 - AluSq SINE Alu -13 300 3 1012 277 81 106 chr6 102768980 102769048 -86510506 + L1MC4a LINE L1 5247 5315 -831 1068 229 90 13 chr6 102769246 102769556 -86509998 + L1ME3A LINE L1 5820 6153 -17 2452 151 38 47 chr6 102769600 102770071 -86509483 - MLT1C LTR MaLR 0 467 1 924 226 54 21 chr6 102770739 102771018 -86508536 + L1ME2 LINE L1 5867 6154 -10 433 264 40 30 chr6 102771066 102771267 -86508287 + L1MC4 LINE L1 7836 8038 -4 326 367 13 13 chr6 102771850 102772008 -86507546 + MIR3 SINE MIR 33 190 -18 19481 30 1 1 chr6 102774369 102777328 -86502226 - L1PA4 LINE L1 0 6155 3194 557 280 87 31 chr6 102778074 102778363 -86501191 - L2 LINE L2 -21 3292 2988 247 284 80 11 chr6 102778403 102778491 -86501063 - MIR SINE MIR -113 149 56 745 264 16 16 chr6 102778813 102778995 -86500559 - MIR SINE MIR -74 188 7 257 284 156 0 chr6 102779112 102779221 -86500333 - MIR SINE MIR -124 138 13 249 308 187 39 chr6 102779875 102780057 -86499497 - MIR SINE MIR -1 261 53 255 278 211 0 chr6 102783142 102783232 -86496322 - MIR3 SINE MIR -3 205 97 351 279 142 33 chr6 102783598 102783781 -86495773 - L1ME3A LINE L1 -27 6143 5941 1719 178 71 21 chr6 102783792 102784132 -86495422 - MLT1A1 LTR MaLR 0 365 9 2712 102 58 17 chr6 102784132 102784543 -86495011 - MSTA LTR MaLR 0 428 1 1114 272 42 26 chr6 102784572 102784954 -86494600 - L1ME3A LINE L1 -223 5947 5560 2232 115 0 0 chr6 102785150 102785437 -86494117 - AluSx SINE Alu -25 287 1 189 132 0 0 chr6 102786409 102786447 -86493107 + (T)n Simple_repeat Simple_repeat 1 38 0 2341 140 82 12 chr6 102787085 102787485 -86492069 - MSTC LTR MaLR 0 428 1 403 339 38 21 chr6 102788177 102788363 -86491191 - MIR3 SINE MIR -3 205 17 5216 237 65 28 chr6 102789153 102790217 -86489337 + L1ME1 LINE L1 36 1181 -5215 1700 157 89 7 chr6 102790217 102790498 -86489056 + AluSx SINE Alu 1 304 -8 5216 237 65 28 chr6 102790498 102791052 -86488502 + L1ME1 LINE L1 1181 1713 -4683 6206 214 93 97 chr6 102791053 102792657 -86486897 + L1ME1 LINE L1 1829 3438 -2965 1699 165 3 23 chr6 102792657 102792966 -86486588 + AluJo SINE Alu 1 303 -9 2247 102 3 7 chr6 102792966 102793269 -86486285 + AluSc SINE Alu 1 302 -7 261 0 0 0 chr6 102793269 102793298 -86486256 + (TA)n Simple_repeat Simple_repeat 1 29 0 189 0 0 0 chr6 102793297 102793318 -86486236 + (CA)n Simple_repeat Simple_repeat 2 22 0 6206 214 93 97 chr6 102793298 102793655 -86485899 + L1ME1 LINE L1 3436 3793 -2610 1522 153 12 20 chr6 102793655 102793903 -86485651 + AluJo SINE Alu 1 246 -66 6206 214 93 97 chr6 102793903 102793931 -86485623 + L1ME1 LINE L1 3793 3820 -2583 2493 77 0 6 chr6 102793931 102794244 -86485310 + AluY SINE Alu 1 311 0 6206 214 93 97 chr6 102794244 102794785 -86484769 + L1ME1 LINE L1 3820 4362 -2041 1770 127 54 7 chr6 102794785 102795061 -86484493 + AluSg SINE Alu 1 289 -21 6206 214 93 97 chr6 102795061 102795091 -86484463 + L1ME1 LINE L1 4362 4391 -2012 2127 127 3 0 chr6 102795091 102795391 -86484163 - AluSx SINE Alu -11 301 1 6206 214 93 97 chr6 102795391 102795643 -86483911 + L1ME1 LINE L1 4391 4643 -1760 970 190 0 28 chr6 102795643 102795756 -86483798 + AluJo SINE Alu 1 116 -196 396 40 0 0 chr6 102795756 102795806 -86483748 + (CA)n Simple_repeat Simple_repeat 1 50 0 2092 100 4 0 chr6 102795808 102796077 -86483477 - AluSg SINE Alu -19 291 22 970 190 0 28 chr6 102796077 102796139 -86483415 + AluJo SINE Alu 117 174 -138 232 179 179 45 chr6 102796139 102796225 -86483329 + AluJ/FRAM SINE Alu 222 302 0 6206 214 93 97 chr6 102796225 102797649 -86481905 + L1ME1 LINE L1 4641 6403 0 2250 113 0 3 chr6 102797774 102798076 -86481478 + AluSq SINE Alu 1 301 -12 300 27 0 0 chr6 102798843 102798880 -86480674 + (TTTC)n Simple_repeat Simple_repeat 1 37 0 319 333 49 10 chr6 102799938 102800040 -86479514 - MER91C DNA MER1_type -2 138 33 338 272 9 44 chr6 102800133 102800247 -86479307 - MER102b DNA MER1_type 0 341 232 864 146 0 0 chr6 102800273 102800396 -86479158 + FLAM_A SINE Alu 1 123 -10 1927 104 0 4 chr6 102800403 102800654 -86478900 + AluSg SINE Alu 39 288 -22 26 0 0 0 chr6 102800654 102800680 -86478874 + AT_rich Low_complexity Low_complexity 1 26 0 1781 178 0 7 chr6 102800821 102801124 -86478430 + AluJo SINE Alu 1 301 -11 466 187 0 0 chr6 102801502 102801577 -86477977 - FLAM SINE Alu -21 122 48 275 242 108 33 chr6 102803550 102803670 -86475884 + L3b LINE CR1 1368 1496 -87 195 280 0 0 chr6 102804061 102804111 -86475443 + MIR SINE MIR 83 132 -76 3454 252 154 20 chr6 102804118 102804942 -86474612 - L2 LINE L2 0 3313 2601 2239 114 3 7 chr6 102804942 102805250 -86474304 - AluSx SINE Alu -5 307 1 3454 252 154 20 chr6 102805250 102805887 -86473667 - L2 LINE L2 -712 2601 1668 472 247 108 76 chr6 102805890 102806233 -86473321 + MLT1J2 LTR MaLR 1 371 -54 767 142 13 184 chr6 102806233 102806466 -86473088 + 7SK RNA RNA 1 193 0 472 247 108 76 chr6 102806466 102806515 -86473039 + MLT1J2 LTR MaLR 371 417 -8 370 219 124 0 chr6 102806522 102806627 -86472927 - L2 LINE L2 -1648 1666 1549 231 191 21 0 chr6 102806646 102806693 -86472861 + MIR3 SINE MIR 127 174 -34 276 333 111 7 chr6 102810541 102810694 -86468860 + L3b LINE CR1 1276 1444 -139 243 125 0 0 chr6 102810707 102810747 -86468807 + (TG)n Simple_repeat Simple_repeat 1 40 0 307 265 115 70 chr6 102812506 102812706 -86466848 + L1MC4 LINE L1 7522 7730 -312 325 252 114 48 chr6 102812755 102812965 -86466589 + L1ME4a LINE L1 5896 6119 -2 1827 174 40 26 chr6 102814516 102814867 -86464687 - MLT1B LTR MaLR -2 388 33 434 219 66 147 chr6 102814974 102815057 -86464497 + L1MC4a LINE L1 5780 5868 -1940 2183 108 3 34 chr6 102815057 102815380 -86464174 - AluSp SINE Alu 0 313 1 434 219 66 147 chr6 102815380 102815808 -86463746 + L1MC4a LINE L1 5868 6250 -1558 1244 254 56 21 chr6 102815867 102816245 -86463309 + L1MC4 LINE L1 7522 7912 -130 778 297 84 7 chr6 102816513 102816809 -86462745 - L2 LINE L2 -1 3312 2994 544 320 108 24 chr6 102816811 102817145 -86462409 - L2 LINE L2 -1 3312 2951 198 284 34 45 chr6 102817170 102817258 -86462296 - L2 LINE L2 -805 2509 2423 1304 194 12 10 chr6 102818283 102818581 -86460973 + L1MB2 LINE L1 5846 6134 -34 1362 311 204 27 chr6 102819946 102820960 -86458594 - L3 LINE CR1 -48 1529 336 484 129 439 0 chr6 102823966 102824044 -86455510 + MER3 DNA MER1_type 20 63 -146 2349 101 3 0 chr6 102824044 102824352 -86455202 - AluSq SINE Alu -4 309 1 484 129 439 0 chr6 102824352 102824405 -86455149 + MER3 DNA MER1_type 63 209 0 245 192 19 0 chr6 102824444 102824496 -86455058 + L2 LINE L2 3261 3313 0 309 287 57 51 chr6 102824851 102825049 -86454505 + MIR SINE MIR 2 191 -63 978 196 0 0 chr6 102825601 102825769 -86453785 + AluJb SINE Alu 134 301 -11 2290 72 0 39 chr6 102826298 102826605 -86452949 + AluY SINE Alu 1 295 -16 2448 74 3 7 chr6 102827430 102827728 -86451826 - AluSx SINE Alu -15 297 1 190 305 104 73 chr6 102828278 102828442 -86451112 + L2 LINE L2 3103 3271 -1 219 88 0 0 chr6 102829071 102829105 -86450449 + (T)n Simple_repeat Simple_repeat 1 34 0 198 147 29 0 chr6 102832176 102832210 -86447344 - MIR SINE MIR -6 256 222 808 247 87 4 chr6 102833343 102833574 -86445980 - MIR SINE MIR -5 257 8 910 168 119 5 chr6 102834041 102834226 -86445328 + MLT1D LTR MaLR 1 206 -299 734 173 15 15 chr6 102834485 102834618 -86444936 - FLAM_A SINE Alu 0 133 1 2236 101 10 7 chr6 102834622 102834930 -86444624 - AluSq SINE Alu -4 309 1 300 301 74 81 chr6 102835580 102835802 -86443752 + L2 LINE L2 2855 3074 -198 2355 108 16 38 chr6 102835802 102836174 -86443380 + THE1B LTR MaLR 1 364 0 300 301 74 81 chr6 102836174 102836370 -86443184 + L2 LINE L2 3074 3270 -2 2407 79 3 7 chr6 102838385 102838688 -86440866 + AluSp SINE Alu 2 303 -10 2156 142 0 0 chr6 102838708 102839010 -86440544 - AluSx SINE Alu -10 302 1 665 161 0 9 chr6 102840758 102840870 -86438684 + FLAM_C SINE Alu 21 131 -12 334 244 67 0 chr6 102842051 102842141 -86437413 + L3 LINE CR1 1235 1330 -247 2142 122 3 7 chr6 102842552 102842848 -86436706 + AluSx SINE Alu 1 295 -17 1098 131 45 90 chr6 102843267 102843512 -86436042 - L1MB2 LINE L1 -2 6169 5936 3948 174 18 41 chr6 102843519 102844147 -86435407 - L1MB2 LINE L1 0 6155 5567 1783 188 13 0 chr6 102844147 102844455 -86435099 + AluJb SINE Alu 1 312 0 3948 174 18 41 chr6 102844455 102844992 -86434562 - L1MB2 LINE L1 -588 5567 5019 346 256 101 8 chr6 102847341 102847470 -86432084 + MIR3 SINE MIR 3 143 -65 639 219 26 31 chr6 102847478 102847670 -86431884 - LTR33A LTR ERVL -17 506 316 244 262 120 62 chr6 102847768 102847993 -86431561 - LTR50 LTR ERVL -557 238 1 296 313 15 15 chr6 102848352 102848483 -86431071 - ERVL LTR ERVL -3970 1794 1664 450 0 0 0 chr6 102848591 102848641 -86430913 + (TG)n Simple_repeat Simple_repeat 1 50 0 910 184 46 23 chr6 102848666 102848840 -86430714 + MER45A DNA AcHobo 1 178 0 203 323 71 0 chr6 102848846 102848945 -86430609 - L2 LINE L2 -222 3091 2986 189 298 71 90 chr6 102848942 102849197 -86430357 + L2 LINE L2 2963 3212 -60 * 471 210 7 116 chr6 102849245 102849383 -86430171 - MIR SINE MIR -93 169 47 915 132 0 0 chr6 102849462 102849591 -86429963 + FLAM_C SINE Alu 5 133 0 1588 204 4 11 chr6 102849901 102850181 -86429373 + AluJb SINE Alu 3 280 -32 23 0 0 0 chr6 102850183 102850206 -86429348 + AT_rich Low_complexity Low_complexity 1 23 0 862 153 0 0 chr6 102850209 102850340 -86429214 + FLAM_C SINE Alu 1 131 -2 392 291 50 14 chr6 102852515 102852656 -86426898 + MIR SINE MIR 36 181 -81 1455 51 22 0 chr6 102853258 102853436 -86426118 + L1PA3 LINE L1 5974 6155 0 195 377 41 25 chr6 102854051 102854173 -86425381 - L2 LINE L2 -13 3259 3136 1998 138 0 3 chr6 102859231 102859528 -86420026 + AluJb SINE Alu 1 296 -16 2500 55 0 19 chr6 102859868 102860178 -86419376 + AluY SINE Alu 1 304 -7 649 288 153 38 chr6 102861147 102861619 -86417935 - L1MC/D LINE L1 -2028 5763 5238 3560 172 19 61 chr6 102862018 102862787 -86416767 - L1MB7 LINE L1 -19 6165 5429 186 133 0 0 chr6 102863042 102863072 -86416482 + (GA)n Simple_repeat Simple_repeat 1 30 0 197 255 31 93 chr6 102863474 102863628 -86415926 - MIR SINE MIR -76 186 43 34 79 0 0 chr6 102864262 102864338 -86415216 + AT_rich Low_complexity Low_complexity 1 76 0 861 139 0 0 chr6 102864628 102864757 -86414797 + FLAM_C SINE Alu 2 130 -3 1624 161 0 0 chr6 102866051 102866293 -86413261 - AluJo SINE Alu -30 282 41 22 0 0 0 chr6 102866584 102866606 -86412948 + AT_rich Low_complexity Low_complexity 1 22 0 252 306 109 14 chr6 102866754 102866901 -86412653 + MIR SINE MIR 49 209 -53 635 296 110 44 chr6 102867030 102867348 -86412206 - L2 LINE L2 0 3313 2975 6376 186 60 20 chr6 102867360 102868679 -86410875 + Charlie1a DNA MER1_type 15 1394 -1367 2196 94 0 7 chr6 102868679 102868956 -86410598 - AluSx SINE Alu -17 295 21 6376 186 60 20 chr6 102868956 102869016 -86410538 + Charlie1a DNA MER1_type 1394 1450 -5 227 238 88 88 chr6 102869045 102869226 -86410328 - L1MC/D LINE L1 -1687 4442 4262 919 260 113 30 chr6 102869241 102869270 -86410284 - L1MC/D LINE L1 -2887 3242 3217 965 244 23 5 chr6 102869270 102869487 -86410067 + MER58A DNA MER1_type 4 224 0 919 260 113 30 chr6 102869487 102869661 -86409893 - L1MC/D LINE L1 -2912 3217 3059 404 62 0 31 chr6 102869661 102869726 -86409828 + L1PA8 LINE L1 6110 6172 0 919 260 113 30 chr6 102869726 102870087 -86409467 - L1MC/D LINE L1 -3070 3059 2630 252 266 80 4 chr6 102870224 102870292 -86409262 - L1MC/D LINE L1 -3698 2431 2370 2102 132 0 16 chr6 102870292 102870315 -86409239 - AluSx SINE Alu -6 306 284 186 43 0 0 chr6 102870315 102870338 -86409216 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 2102 132 0 16 chr6 102870338 102870625 -86408929 - AluSx SINE Alu -28 284 1 252 266 80 4 chr6 102870625 102870694 -86408860 - L1MC/D LINE L1 -3759 2370 2277 366 308 60 0 chr6 102870772 102870905 -86408649 - L1MC/D LINE L1 -4101 2209 2069 632 289 85 47 chr6 102871082 102871183 -86408371 - L1MDa LINE L1 -4549 1580 1484 1581 207 13 10 chr6 102871183 102871483 -86408071 - AluJo SINE Alu -11 301 1 632 289 85 47 chr6 102871483 102871875 -86407679 - L1MDa LINE L1 -4645 1484 1225 30407 37 1 2 chr6 102871886 102878046 -86401508 + L1PA4 LINE L1 2 6155 0 330 272 34 58 chr6 102878104 102878310 -86401244 - L1MDa LINE L1 -4922 1197 997 338 255 151 96 chr6 102878327 102878711 -86400843 - L1MDa LINE L1 -5155 964 560 2112 295 123 25 chr6 102878983 102880028 -86399526 - L2 LINE L2 -580 2734 1587 289 340 79 20 chr6 102880461 102880664 -86398890 - L3b LINE CR1 -252 1331 1117 343 286 15 53 chr6 102881528 102881661 -86397893 + MIR SINE MIR 63 190 -72 405 245 122 0 chr6 102881731 102881878 -86397676 + MER104 DNA Tc2 1 165 -15 307 250 50 25 chr6 102882686 102882766 -86396788 + L2 LINE L2 3153 3234 -38 261 0 0 0 chr6 102883175 102883204 -86396350 + (T)n Simple_repeat Simple_repeat 1 29 0 437 253 0 0 chr6 102883215 102883314 -86396240 + MLT1H LTR MaLR 247 345 -204 904 189 114 15 chr6 102883321 102883522 -86396032 - MER58A DNA MER1_type -2 222 2 469 134 31 118 chr6 102883539 102883666 -86395888 + MLT1H LTR MaLR 431 546 -3 338 354 82 6 chr6 102883932 102884090 -86395464 + L2 LINE L2 3103 3272 0 202 350 45 23 chr6 102885075 102885252 -86394302 - L2 LINE L2 -264 3008 2828 184 318 34 45 chr6 102885581 102885669 -86393885 - L2 LINE L2 0 3272 3186 247 257 54 68 chr6 102885752 102885826 -86393728 + L2 LINE L2 3191 3263 -9 478 242 0 0 chr6 102885829 102885920 -86393634 - L2 LINE L2 0 3313 3223 224 283 71 26 chr6 102886165 102886278 -86393276 - L2 LINE L2 -4 3309 3192 180 209 15 60 chr6 102886687 102886754 -86392800 - L2 LINE L2 -3140 174 111 223 241 17 0 chr6 102886879 102886937 -86392617 + CT-rich Low_complexity Low_complexity 2 60 0 220 150 25 88 chr6 102887677 102887757 -86391797 + GA-rich Low_complexity Low_complexity 3 77 0 233 274 53 62 chr6 102887931 102888044 -86391510 - MIR SINE MIR -32 230 119 705 306 128 20 chr6 102888472 102888871 -86390683 - L3 LINE CR1 -32 1545 1104 813 197 11 44 chr6 102888872 102889055 -86390499 - FRAM SINE Alu 0 176 1 379 322 91 7 chr6 102889056 102889199 -86390355 - L3 LINE CR1 -466 1111 957 308 304 78 37 chr6 102889263 102889454 -86390100 - L2 LINE L2 -165 3107 2909 2370 121 74 2 chr6 102889559 102889963 -86389591 - Tigger2 DNA MER2_type -5 2713 2281 433 127 0 0 chr6 102889970 102890033 -86389521 + MER8 DNA MER2_type 177 239 0 389 232 81 85 chr6 102896565 102896776 -86382778 - MIR SINE MIR -52 210 1 375 191 51 51 chr6 102900488 102900645 -86378909 + L1ME4a LINE L1 5965 6121 0 3296 137 21 21 chr6 102903718 102904322 -86375232 - L1MB3 LINE L1 -7 6176 5573 409 193 18 28 chr6 102904331 102904440 -86375114 - L1MC2 LINE L1 0 6344 6237 188 333 0 0 chr6 102904664 102904721 -86374833 - MIR3 SINE MIR -16 192 136 2601 89 31 31 chr6 102905643 102906057 -86373497 - L1MA1 LINE L1 0 6302 5889 1037 183 16 0 chr6 102906507 102906693 -86372861 + MER5A DNA MER1_type 1 189 0 340 200 93 50 chr6 102907504 102907629 -86371925 - L1ME4a LINE L1 -2 6119 5986 871 221 80 55 chr6 102907629 102907955 -86371599 - MER46C DNA MER2_type -2 336 3 340 200 93 50 chr6 102907955 102907969 -86371585 - L1ME4a LINE L1 -135 5986 5974 506 277 118 33 chr6 102908032 102908361 -86371193 - L1ME4a LINE L1 -252 5869 5513 183 219 141 16 chr6 102908469 102908533 -86371021 + L3b LINE CR1 1271 1342 -241 225 0 0 0 chr6 102910195 102910220 -86369334 + (TA)n Simple_repeat Simple_repeat 2 26 0 414 280 227 0 chr6 102910617 102910749 -86368805 + MIR3 SINE MIR 16 177 -31 1012 189 35 0 chr6 102911321 102911522 -86368032 + MER3 DNA MER1_type 2 209 0 241 308 29 39 chr6 102911599 102911703 -86367851 - L2 LINE L2 -6 3266 3164 285 209 0 0 chr6 102913648 102913715 -86365839 + (CACCAT)n Simple_repeat Simple_repeat 1 67 0 188 205 26 0 chr6 102913717 102913756 -86365798 - L2 LINE L2 -18 3254 3215 240 365 19 9 chr6 102913769 102913876 -86365678 - MIR SINE MIR -109 153 46 443 332 52 57 chr6 102914117 102914466 -86365088 + L2 LINE L2 2888 3234 -38 292 246 0 0 chr6 102915212 102915273 -86364281 - MIR3 SINE MIR -22 186 126 630 175 0 0 chr6 102915559 102915673 -86363881 - L1MB3 LINE L1 -7 6176 6063 196 245 213 21 chr6 102917171 102917265 -86362289 + MIR SINE MIR 38 149 -59 1188 140 0 0 chr6 102917283 102917462 -86362092 - AluJo SINE Alu -13 299 121 4494 173 32 12 chr6 102917664 102918220 -86361334 - L1MB7 LINE L1 -9 6175 5631 2176 160 24 27 chr6 102918220 102918590 -86360964 + MLT2D LTR ERVL 4 374 -40 510 31 0 0 chr6 102918590 102918654 -86360900 + (CA)n Simple_repeat Simple_repeat 2 65 0 2176 160 24 27 chr6 102918654 102918695 -86360859 + MLT2D LTR ERVL 374 414 0 4494 173 32 12 chr6 102918695 102919454 -86360100 - L1MB7 LINE L1 -553 5631 4838 1880 179 66 2 chr6 102919477 102919945 -86359609 - L1MB7 LINE L1 -1398 4748 4251 2251 95 0 3 chr6 102920410 102920751 -86358803 + AluSq SINE Alu 1 340 0 231 36 0 0 chr6 102920906 102920934 -86358620 + (TA)n Simple_repeat Simple_repeat 2 29 0 189 0 0 0 chr6 102920934 102920955 -86358599 + (T)n Simple_repeat Simple_repeat 1 21 0 283 297 49 49 chr6 102921780 102921961 -86357593 - MIR SINE MIR -58 204 31 1446 266 74 37 chr6 102922516 102923005 -86356549 + MER115 DNA AcHobo 187 693 0 1923 173 36 3 chr6 102924207 102924543 -86355011 + MER7A DNA MER2_type 2 346 0 524 277 103 128 chr6 102924552 102924995 -86354559 - L3 LINE CR1 -20 1557 1104 2241 93 0 0 chr6 102924995 102925312 -86354242 + AluSc SINE Alu 1 317 0 524 277 103 128 chr6 102925312 102925566 -86353988 - L3 LINE CR1 -473 1104 858 21 0 0 0 chr6 102925566 102925587 -86353967 + AT_rich Low_complexity Low_complexity 1 21 0 524 277 103 128 chr6 102925587 102925664 -86353890 - L3 LINE CR1 -719 858 781 22 56 0 0 chr6 102926158 102926194 -86353360 + AT_rich Low_complexity Low_complexity 1 36 0 2382 288 122 33 chr6 102926800 102927705 -86351849 + L2 LINE L2 1541 2364 -949 7126 182 34 17 chr6 102927705 102929129 -86350425 - Charlie1a DNA MER1_type -3 1452 4 2382 288 122 33 chr6 102929129 102929814 -86349740 + L2 LINE L2 2364 3310 -3 6540 212 14 2 chr6 102930162 102931528 -86348026 + L1PA14 LINE L1 1644 3025 -3121 12801 176 73 0 chr6 102931531 102934530 -86345024 + L1PA14 LINE L1 3083 6159 -2 396 293 174 40 chr6 102935027 102935579 -86343975 + L2 LINE L2 2680 3312 -1 195 42 0 0 chr6 102936696 102936720 -86342834 + (CAGTA)n Simple_repeat Simple_repeat 1 24 0 462 299 85 11 chr6 102936722 102936899 -86342655 + MIR SINE MIR 18 207 -55 23 33 0 0 chr6 102937615 102937645 -86341909 + AT_rich Low_complexity Low_complexity 1 30 0 254 268 28 14 chr6 102937892 102937963 -86341591 + MIR SINE MIR 19 90 -118 185 205 51 0 chr6 102937991 102938030 -86341524 - L2 LINE L2 -52 3220 3180 26 64 0 0 chr6 102939358 102939405 -86340149 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr6 102939433 102939455 -86340099 + AT_rich Low_complexity Low_complexity 1 22 0 2216 85 3 17 chr6 102939455 102939749 -86339805 - AluSx SINE Alu -22 290 1 1137 213 91 69 chr6 102940907 102941357 -86338197 + MLT1C LTR MaLR 7 466 -1 2856 10 0 0 chr6 102941392 102941700 -86337854 + AluYa5 SINE Alu 1 308 -3 285 295 65 29 chr6 102941885 102942024 -86337530 - MER5A DNA MER1_type -10 179 36 392 192 0 32 chr6 102942322 102942423 -86337131 + MER5A DNA MER1_type 4 100 -89 504 313 99 30 chr6 102942429 102942965 -86336589 - L1MC4a LINE L1 -1895 5913 5341 208 182 0 23 chr6 102943045 102943089 -86336465 + A-rich Low_complexity Low_complexity 3 45 0 2316 94 0 0 chr6 102946204 102946501 -86333053 + AluSc SINE Alu 1 297 -12 5571 35 0 9 chr6 102946501 102947131 -86332423 + L1PA4 LINE L1 5528 6151 -4 1212 115 50 6 chr6 102947233 102947415 -86332139 - L1PA8A LINE L1 -5 6126 5937 380 60 0 0 chr6 102947415 102947463 -86332091 - L1PA7 LINE L1 -1 6153 6104 2206 87 0 10 chr6 102947463 102947761 -86331793 - L1P LINE L1 -1588 4558 4262 2170 128 0 3 chr6 102947761 102948074 -86331480 - AluSx SINE Alu 0 312 1 435 258 38 23 chr6 102948387 102948519 -86331035 - MIR SINE MIR -90 172 39 471 266 87 38 chr6 102948689 102948873 -86330681 + MIR SINE MIR 20 212 -50 6688 22 4 4 chr6 102951414 102952180 -86327374 - L1PA4 LINE L1 0 6155 5418 1511 161 64 11 chr6 102953349 102953616 -86325938 + AluJb SINE Alu 1 281 -31 462 295 116 18 chr6 102954210 102954434 -86325120 + MIR SINE MIR 3 248 -14 189 107 0 0 chr6 102954731 102954759 -86324795 + (T)n Simple_repeat Simple_repeat 1 28 0 327 298 32 24 chr6 102955809 102955933 -86323621 + MIR3 SINE MIR 73 197 -11 333 0 0 0 chr6 102955957 102955994 -86323560 + (CA)n Simple_repeat Simple_repeat 2 38 0 2180 115 16 0 chr6 102956124 102956428 -86323126 + AluSx SINE Alu 1 309 -3 1066 230 119 39 chr6 102957810 102958245 -86321309 - MLT1J LTR MaLR -41 470 1 642 283 69 44 chr6 102958735 102959053 -86320501 + L1ME4a LINE L1 5572 5897 -224 2156 107 0 0 chr6 102959104 102959384 -86320170 - AluSx SINE Alu -32 280 1 1930 155 3 3 chr6 102959702 102959992 -86319562 + AluSx SINE Alu 1 290 -22 236 262 99 35 chr6 102960572 102960744 -86318810 + L1ME4a LINE L1 5936 6118 -3 627 266 30 18 chr6 102961209 102961378 -86318176 + MIR SINE MIR 3 173 -89 243 324 178 9 chr6 102961443 102961656 -86317898 + L2 LINE L2 2807 3055 -217 427 179 0 26 chr6 102961678 102961756 -86317798 - L2 LINE L2 -10 3303 3228 326 353 57 0 chr6 102961850 102961972 -86317582 + L2 LINE L2 3182 3310 -3 298 267 23 12 chr6 102962152 102962238 -86317316 + L2 LINE L2 3183 3269 -3 302 183 14 0 chr6 102962238 102962309 -86317245 + GA-rich Low_complexity Low_complexity 2 73 0 204 225 0 0 chr6 102963051 102963091 -86316463 + L2 LINE L2 3218 3257 -15 385 236 140 79 chr6 102966229 102966521 -86313033 + L1ME4a LINE L1 5546 5855 -266 207 100 0 0 chr6 102966591 102966621 -86312933 + (CA)n Simple_repeat Simple_repeat 2 31 0 186 319 33 22 chr6 102966806 102966897 -86312657 - MIR3 SINE MIR -13 195 104 336 278 199 14 chr6 102967134 102967350 -86312204 - MIR SINE MIR -3 259 4 216 254 55 0 chr6 102968143 102968198 -86311356 + L2 LINE L2 2608 2665 -649 1563 252 84 12 chr6 102968394 102968770 -86310784 - LTR16B LTR ERVL -4 460 48 189 0 0 0 chr6 102968770 102968791 -86310763 + (CAGT)n Simple_repeat Simple_repeat 3 23 0 1563 252 84 12 chr6 102968791 102968843 -86310711 - LTR16B LTR ERVL -416 48 1 525 227 39 23 chr6 102968843 102968971 -86310583 + MER94 DNA DNA 5 134 0 1709 193 0 20 chr6 102969194 102969494 -86310060 - AluJb SINE Alu -18 294 1 181 273 26 26 chr6 102969496 102969573 -86309981 + L2 LINE L2 3149 3225 -88 182 179 77 0 chr6 102970538 102970577 -86308977 + L2 LINE L2 3272 3313 0 565 303 47 28 chr6 102970786 102970997 -86308557 + L3b LINE CR1 1269 1483 -100 204 307 120 0 chr6 102971185 102971260 -86308294 + MIR SINE MIR 64 147 -61 369 290 16 40 chr6 102972297 102972421 -86307133 - MIR3 SINE MIR -21 187 67 821 253 18 50 chr6 102973529 102973806 -86305748 + L2 LINE L2 3041 3308 -5 516 289 33 7 chr6 102975326 102975478 -86304076 - MLT1L LTR MaLR -28 587 432 224 385 151 27 chr6 102975708 102976118 -86303436 - L2 LINE L2 -6 3266 2806 22 0 0 0 chr6 102976155 102976177 -86303377 + AT_rich Low_complexity Low_complexity 1 22 0 2425 68 3 0 chr6 102978712 102979008 -86300546 + AluSc SINE Alu 1 297 -12 23 0 0 0 chr6 102979408 102979431 -86300123 + AT_rich Low_complexity Low_complexity 1 23 0 1926 168 0 13 chr6 102980260 102980576 -86298978 + AluJo SINE Alu 1 312 0 35 24 0 0 chr6 102981460 102981502 -86298052 + AT_rich Low_complexity Low_complexity 1 42 0 20597 33 5 1 chr6 102981831 102984965 -86294589 + L1PA4 LINE L1 3002 6147 -8 2147 130 0 10 chr6 102985254 102985562 -86293992 - AluSq SINE Alu -8 305 1 595 258 37 62 chr6 102985844 102985980 -86293574 + L1ME4a LINE L1 5592 5730 -391 1655 159 19 0 chr6 102985980 102986244 -86293310 + AluJb SINE Alu 1 269 -43 595 258 37 62 chr6 102986244 102986429 -86293125 + L1ME4a LINE L1 5730 5905 -216 2347 194 92 47 chr6 102986466 102987023 -86292531 - MER119 DNA MER1_type -1 582 1 21 57 0 0 chr6 102988114 102988149 -86291405 + AT_rich Low_complexity Low_complexity 1 35 0 584 203 93 71 chr6 102988224 102988406 -86291148 + L2 LINE L2 3119 3304 -9 277 318 63 0 chr6 102988691 102988817 -86290737 + L1MEd LINE L1 60 193 -5926 21 0 0 0 chr6 102988926 102988947 -86290607 + AT_rich Low_complexity Low_complexity 1 21 0 2163 127 0 10 chr6 102989032 102989339 -86290215 + AluSx SINE Alu 1 304 -8 779 282 68 81 chr6 102989414 102989929 -86289625 + L1MEd LINE L1 568 1073 -5046 2308 104 0 0 chr6 102989929 102990227 -86289327 + AluSg SINE Alu 1 298 -12 779 282 68 81 chr6 102990227 102990403 -86289151 + L1MEd LINE L1 1073 1250 -4869 676 327 95 59 chr6 102990414 102991217 -86288337 + L1MEd LINE L1 1230 2220 -4090 2128 189 9 46 chr6 102991219 102991674 -86287880 + L1ME1 LINE L1 5652 6089 -77 681 265 121 5 chr6 102991770 102991993 -86287561 - MIR SINE MIR 0 262 14 390 225 25 92 chr6 102992276 102992396 -86287158 - MIR SINE MIR -129 133 22 541 286 79 25 chr6 102993536 102993755 -86285799 - MIR SINE MIR -3 259 40 345 24 0 0 chr6 102995210 102995252 -86284302 + (TC)n Simple_repeat Simple_repeat 1 42 0 288 233 167 0 chr6 102996356 102996446 -86283108 + MIR SINE MIR 48 152 -56 267 276 40 0 chr6 102996763 102996839 -86282715 - MIR SINE MIR -11 251 173 459 214 182 104 chr6 102996882 102997102 -86282452 - MIR SINE MIR -17 245 9 290 252 235 17 chr6 102997134 102997253 -86282301 + MER5B DNA MER1_type 34 178 0 802 201 6 6 chr6 102997660 102997743 -86281811 - MER5B DNA MER1_type 0 178 96 2252 96 7 3 chr6 102997743 102998046 -86281508 - AluSx SINE Alu -8 304 1 802 201 6 6 chr6 102998046 102998131 -86281423 - MER5B DNA MER1_type -81 97 10 1722 136 42 25 chr6 102998479 102998765 -86280789 - AluSx SINE Alu -21 291 1 653 122 0 22 chr6 103000437 103000527 -86279027 + FRAM SINE Alu 71 158 -18 859 184 61 0 chr6 103000700 103000863 -86278691 - MER63A DNA MER1_type -37 173 1 275 311 200 13 chr6 103000924 103001149 -86278405 + L2 LINE L2 2673 2939 -375 444 247 294 0 chr6 103001158 103001304 -86278250 - MER5A DNA MER1_type 0 189 1 620 281 54 48 chr6 103001312 103001444 -86278110 + L2 LINE L2 2978 3108 -205 1943 89 19 12 chr6 103001444 103001702 -86277852 - L1PA10 LINE L1 -8 6160 5901 620 281 54 48 chr6 103001702 103001828 -86277726 + L2 LINE L2 3108 3232 -81 1705 143 17 34 chr6 103001828 103002122 -86277432 - AluJb SINE Alu -23 289 1 288 0 0 0 chr6 103002126 103002158 -86277396 + (TTG)n Simple_repeat Simple_repeat 2 33 0 620 281 54 48 chr6 103002158 103002227 -86277327 + L2 LINE L2 3234 3313 0 21 71 0 0 chr6 103002551 103002593 -86276961 + AT_rich Low_complexity Low_complexity 1 42 0 1761 163 0 24 chr6 103003450 103003745 -86275809 + AluJb SINE Alu 1 288 -24 375 314 102 8 chr6 103003906 103004024 -86275530 + L2 LINE L2 3137 3265 -7 2483 144 24 59 chr6 103004038 103004578 -86274976 - LTR10A LTR ERV1 -64 545 25 1307 186 98 3 chr6 103004993 103005289 -86274265 + MER33 DNA MER1_type 1 324 0 236 351 127 49 chr6 103005322 103005749 -86273805 + L2 LINE L2 2808 3267 -5 336 224 147 35 chr6 103006208 103006324 -86273230 - MER5B DNA MER1_type -6 172 44 303 28 0 0 chr6 103007409 103007445 -86272109 + (TG)n Simple_repeat Simple_repeat 2 37 0 333 0 0 0 chr6 103008267 103008304 -86271250 + (CA)n Simple_repeat Simple_repeat 1 37 0 198 103 0 0 chr6 103008704 103008733 -86270821 + (A)n Simple_repeat Simple_repeat 1 29 0 1265 165 33 0 chr6 103010273 103010485 -86269069 - MER20 DNA MER1_type 0 219 1 2058 135 26 3 chr6 103012170 103012473 -86267081 + AluJb SINE Alu 1 310 -2 242 241 36 116 chr6 103013435 103013547 -86266007 - L2 LINE L2 -18 3254 3152 * 244 303 137 14 chr6 103013542 103013702 -86265852 - MIR SINE MIR -61 147 6 322 261 145 29 chr6 103013876 103014117 -86265437 + MER102b DNA MER1_type 73 341 0 396 0 0 0 chr6 103015592 103015636 -86263918 + (CA)n Simple_repeat Simple_repeat 1 44 0 1581 106 134 0 chr6 103016075 103016321 -86263233 - AluSx SINE Alu -7 305 27 405 58 0 0 chr6 103016860 103016912 -86262642 + (TG)n Simple_repeat Simple_repeat 2 53 0 265 267 147 27 chr6 103016995 103017145 -86262409 + MIR SINE MIR 53 220 -42 7502 62 10 0 chr6 103018011 103019163 -86260391 - L1PA7 LINE L1 -2 6152 4997 30 45 0 0 chr6 103019521 103019565 -86259989 + AT_rich Low_complexity Low_complexity 1 44 0 1879 172 20 0 chr6 103019812 103020114 -86259440 + AluJb SINE Alu 1 308 -4 604 177 0 26 chr6 103020367 103020480 -86259074 - MER3 DNA MER1_type -93 116 7 833 286 4 18 chr6 103020938 103021165 -86258389 + MIR SINE MIR 29 252 -10 526 282 65 42 chr6 103021406 103021622 -86257932 - L2 LINE L2 -181 3091 2871 743 214 156 16 chr6 103021622 103021814 -86257740 - MER20 DNA MER1_type 0 219 1 1854 118 97 31 chr6 103023808 103024096 -86255458 - AluJb SINE Alu -5 307 1 280 276 53 0 chr6 103025044 103025120 -86254434 - L2 LINE L2 -9 3304 3225 755 275 75 43 chr6 103025656 103026098 -86253456 + L1ME4a LINE L1 5269 5725 -396 227 265 152 23 chr6 103026147 103026279 -86253275 + L1ME4a LINE L1 5828 5976 -145 30 45 0 0 chr6 103026366 103026410 -86253144 + AT_rich Low_complexity Low_complexity 1 44 0 327 285 44 38 chr6 103026431 103026589 -86252965 + L1ME4a LINE L1 5956 6114 -7 738 232 90 43 chr6 103026933 103027166 -86252388 + Charlie1 DNA MER1_type 1 244 -2517 602 252 29 0 chr6 103027144 103027283 -86252271 + Charlie1 DNA MER1_type 2619 2761 0 * 2608 76 35 46 chr6 103028066 103028434 -86251120 - THE1B LTR MaLR 0 364 1 1861 137 17 144 chr6 103028842 103029251 -86250303 - LTR18A LTR ERVL 0 357 1 358 331 86 0 chr6 103031120 103031295 -86248259 + MIR SINE MIR 52 241 -21 208 295 16 0 chr6 103032000 103032061 -86247493 + GA-rich Low_complexity Low_complexity 3 64 0 406 296 22 56 chr6 103033452 103033631 -86245923 - MLT1J2 LTR MaLR -12 438 266 2100 143 2 83 chr6 103033634 103034054 -86245500 - MLT1B LTR MaLR -4 386 1 303 292 31 0 chr6 103034095 103034191 -86245363 - MLT1J1 LTR MaLR -285 161 63 431 325 67 38 chr6 103035442 103035682 -86243872 - MIR SINE MIR -14 248 2 231 338 0 0 chr6 103036325 103036393 -86243161 + MIR3 SINE MIR 93 160 -48 1965 134 0 3 chr6 103036990 103037274 -86242280 + AluSg SINE Alu 9 291 -19 2896 10 0 0 chr6 103037585 103037898 -86241656 - AluYb8 SINE Alu -5 313 1 219 194 16 16 chr6 103038672 103038734 -86240820 + T-rich Low_complexity Low_complexity 2 63 0 460 281 43 22 chr6 103039295 103039480 -86240074 + MIR SINE MIR 64 252 -10 606 260 48 52 chr6 103040294 103040525 -86239029 + MIR SINE MIR 12 241 -21 185 356 0 17 chr6 103041389 103041448 -86238106 - L2 LINE L2 -76 3196 3139 478 238 157 7 chr6 103041600 103041881 -86237673 - L1ME4a LINE L1 -1 6120 5798 443 70 0 0 chr6 103044272 103044329 -86235225 + L1PA16 LINE L1 6101 6157 -9 417 325 75 62 chr6 103044587 103044959 -86234595 - L2 LINE L2 -5 3267 2891 327 257 10 49 chr6 103045290 103045402 -86234152 + MIR SINE MIR 6 115 -93 817 175 18 105 chr6 103045425 103045654 -86233900 + AluJo SINE Alu 87 295 -17 230 0 33 0 chr6 103045872 103045902 -86233652 + (CA)n Simple_repeat Simple_repeat 2 32 0 2493 104 20 0 chr6 103045972 103046328 -86233226 + L1PB3 LINE L1 5418 5780 -374 279 0 0 0 chr6 103046333 103046364 -86233190 + (TG)n Simple_repeat Simple_repeat 2 32 0 343 96 0 0 chr6 103046366 103046426 -86233128 - L1PB4 LINE L1 -328 5828 5782 2583 110 14 0 chr6 103046482 103046838 -86232716 + L1PB3 LINE L1 5789 6149 -5 25 90 0 0 chr6 103047001 103047068 -86232486 + AT_rich Low_complexity Low_complexity 1 67 0 512 307 39 34 chr6 103047157 103047464 -86232090 - L1MC4a LINE L1 -265 5899 5585 405 263 30 23 chr6 103047526 103047659 -86231895 - MIR SINE MIR -56 206 73 497 274 119 15 chr6 103048088 103048289 -86231265 + MIR SINE MIR 25 246 -16 187 330 77 0 chr6 103049442 103049533 -86230021 - MIR SINE MIR -65 143 46 550 325 66 0 chr6 103049669 103049881 -86229673 + MIR SINE MIR 34 259 -3 386 294 29 0 chr6 103049882 103049984 -86229570 - L2 LINE L2 -36 3236 3132 27 49 0 0 chr6 103050185 103050226 -86229328 + AT_rich Low_complexity Low_complexity 1 41 0 317 302 33 39 chr6 103050301 103050483 -86229071 - L2 LINE L2 -518 2796 2616 1600 249 52 25 chr6 103051077 103051554 -86228000 - MER74B LTR ERVL -77 545 56 22 0 0 0 chr6 103051950 103051972 -86227582 + AT_rich Low_complexity Low_complexity 1 22 0 496 269 50 6 chr6 103052377 103052559 -86226995 - L1ME3A LINE L1 -233 5937 5748 1031 244 135 45 chr6 103052628 103053122 -86226432 - L1ME3A LINE L1 -1924 4222 3672 655 210 8 2 chr6 103053371 103053506 -86226048 - L1ME1 LINE L1 -1 6169 6037 2043 164 70 80 chr6 103053612 103054138 -86225416 + LTR8A LTR ERV1 143 663 -64 826 133 74 0 chr6 103054139 103054274 -86225280 + LTR8 LTR ERV1 547 691 0 25 0 0 0 chr6 103054504 103054529 -86225025 + AT_rich Low_complexity Low_complexity 1 25 0 606 188 0 0 chr6 103054679 103054775 -86224779 + MER2 DNA MER2_type 1 96 -249 2223 91 0 7 chr6 103054778 103055114 -86224440 + AluY SINE Alu 1 334 0 380 147 93 0 chr6 103055174 103055249 -86224305 + MER2 DNA MER2_type 90 171 -174 2334 98 0 6 chr6 103055959 103056274 -86223280 + AluSq SINE Alu 1 313 0 184 57 29 29 chr6 103056473 103056508 -86223046 + (GAAAA)n Simple_repeat Simple_repeat 3 37 0 2294 70 16 32 chr6 103056812 103057124 -86222430 - AluSg SINE Alu -3 307 1 1988 112 57 7 chr6 103057664 103057784 -86221770 + AluSx SINE Alu 1 113 -199 183 42 0 0 chr6 103057784 103057808 -86221746 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1988 112 57 7 chr6 103057808 103057983 -86221571 + AluSx SINE Alu 113 311 -1 2442 71 0 0 chr6 103057993 103058289 -86221265 + AluY SINE Alu 1 296 -15 202 242 105 63 chr6 103058876 103058971 -86220583 + MIR3 SINE MIR 105 203 -5 2340 89 0 19 chr6 103059158 103059471 -86220083 - AluSc SINE Alu -2 307 1 1000 191 12 0 chr6 103059896 103060058 -86219496 - AluJo SINE Alu -2 300 137 1292 154 112 4 chr6 103060061 103060204 -86219350 - AluSx SINE Alu -11 301 175 2207 124 3 0 chr6 103060204 103060503 -86219051 - AluSg SINE Alu -10 300 1 1292 154 112 4 chr6 103060503 103060619 -86218935 - AluSx SINE Alu -137 175 14 771 183 0 23 chr6 103060627 103060758 -86218796 - AluJo SINE Alu -172 130 3 1942 234 67 78 chr6 103060926 103061419 -86218135 - MER21B LTR ERV1 -60 803 319 2268 104 3 0 chr6 103061419 103061728 -86217826 - AluSp SINE Alu -3 310 1 1942 234 67 78 chr6 103061728 103061948 -86217606 - MER21B LTR ERV1 -544 319 98 2133 119 10 3 chr6 103062169 103062471 -86217083 - AluSq SINE Alu -9 304 1 279 230 11 81 chr6 103063013 103063100 -86216454 - L1ME4a LINE L1 -94 6027 5947 312 192 212 20 chr6 103063124 103063223 -86216331 - L1MB8 LINE L1 -1 6177 6060 2134 88 42 0 chr6 103063359 103063642 -86215912 - AluSp SINE Alu -18 295 1 2645 51 0 6 chr6 103063663 103063975 -86215579 - AluY SINE Alu -1 310 1 2469 69 0 13 chr6 103064480 103064784 -86214770 - AluSc SINE Alu -9 300 1 2297 94 3 0 chr6 103064789 103065087 -86214467 - AluSp SINE Alu -14 299 1 21 0 0 0 chr6 103065090 103065111 -86214443 + AT_rich Low_complexity Low_complexity 1 21 0 542 124 56 0 chr6 103065135 103065224 -86214330 - L1MC1 LINE L1 0 6333 6240 2075 120 0 3 chr6 103065327 103065618 -86213936 - AluSg SINE Alu -20 290 1 324 282 20 94 chr6 103066338 103066487 -86213067 + L2 LINE L2 3134 3271 -1 2389 79 7 7 chr6 103066617 103066920 -86212634 + AluSg SINE Alu 1 303 -7 2299 107 0 3 chr6 103066920 103067229 -86212325 + AluSx SINE Alu 1 308 -4 1925 106 0 4 chr6 103067550 103067804 -86211750 + AluSx SINE Alu 39 291 -21 2459 64 3 0 chr6 103067809 103068106 -86211448 + AluY SINE Alu 1 298 -13 1843 138 54 10 chr6 103068255 103068553 -86211001 + AluJb SINE Alu 1 311 -1 769 239 31 27 chr6 103068736 103068958 -86210596 - MIR SINE MIR 0 262 40 196 244 0 0 chr6 103069300 103069341 -86210213 - L2 LINE L2 -27 3286 3246 1734 154 0 50 chr6 103070562 103070734 -86208820 - AluJo SINE Alu -9 303 153 2191 115 0 3 chr6 103070734 103071038 -86208516 - AluSq SINE Alu -10 303 1 1734 154 0 50 chr6 103071038 103071184 -86208370 - AluJo SINE Alu -159 153 1 2254 92 26 3 chr6 103071218 103071524 -86208030 - AluSq SINE Alu 0 313 1 1568 171 0 54 chr6 103071524 103071838 -86207716 - AluJo SINE Alu -9 303 6 180 0 0 0 chr6 103071879 103071899 -86207655 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 2323 85 0 13 chr6 103071899 103072199 -86207355 - AluSq SINE Alu -15 298 1 322 93 0 56 chr6 103072208 103072262 -86207292 - L1MB8 LINE L1 0 6178 6128 813 233 0 0 chr6 103072288 103072434 -86207120 - FRAM SINE Alu -30 146 1 316 229 67 19 chr6 103072505 103072610 -86206944 + L1MC4a LINE L1 6097 6206 -1602 1243 108 11 0 chr6 103072705 103072891 -86206663 + LTR64 LTR ERVK 1 188 -370 1154 37 0 7 chr6 103072893 103073028 -86206526 + AluY SINE Alu 1 134 -177 2151 115 20 7 chr6 103073028 103073333 -86206221 + AluSx SINE Alu 1 309 -3 708 151 0 0 chr6 103073405 103073511 -86206043 - AluSg/x SINE Alu -13 296 191 1448 142 0 0 chr6 103073548 103073752 -86205802 + AluSx SINE Alu 2 205 -107 879 137 0 0 chr6 103073990 103074107 -86205447 - FLAM_C SINE Alu -16 117 1 28 48 0 0 chr6 103074875 103074917 -86204637 + AT_rich Low_complexity Low_complexity 1 42 0 368 330 65 28 chr6 103075828 103075870 -86203684 + L1MEd LINE L1 937 976 -5143 2011 100 43 4 chr6 103075870 103076151 -86203403 + AluSg1 SINE Alu 1 292 -17 368 330 65 28 chr6 103076151 103076323 -86203231 + L1MEd LINE L1 976 1159 -4960 318 290 97 0 chr6 103076359 103076483 -86203071 + HAL1 LINE L1 1404 1539 -968 1484 122 73 4 chr6 103076578 103076823 -86202731 + L1PB3 LINE L1 5645 5906 -248 2151 110 3 3 chr6 103076828 103077128 -86202426 + AluSq SINE Alu 4 303 -10 1337 153 102 0 chr6 103077579 103077814 -86201740 + L1PB3 LINE L1 5888 6146 -8 2330 94 0 0 chr6 103077847 103078145 -86201409 + AluSc SINE Alu 1 298 -11 1220 221 131 36 chr6 103078414 103078826 -86200728 - L1ME3A LINE L1 -13 6157 5707 2660 58 0 0 chr6 103078830 103079138 -86200416 + AluY SINE Alu 1 308 -3 398 257 45 97 chr6 103079150 103079215 -86200339 + L1MC/D LINE L1 5377 5444 -677 2869 184 27 13 chr6 103079215 103079768 -86199786 + MER68 LTR ERV1 1 561 -1 398 257 45 97 chr6 103079768 103079990 -86199564 + L1MC/D LINE L1 5444 5649 -472 2226 100 0 3 chr6 103080057 103080340 -86199214 + AluSq SINE Alu 1 283 -25 195 42 0 0 chr6 103080340 103080364 -86199190 + (CA)n Simple_repeat Simple_repeat 1 24 0 2106 169 14 30 chr6 103080541 103080907 -86198647 + LTR57 LTR ERVL 45 404 -7 806 90 45 0 chr6 103081166 103081277 -86198277 - FRAM SINE Alu -1 175 60 729 169 0 31 chr6 103081806 103081936 -86197618 + FLAM_C SINE Alu 6 131 -12 2268 108 0 0 chr6 103081942 103082238 -86197316 + AluSg SINE Alu 1 296 -14 1484 158 0 65 chr6 103082239 103082530 -86197024 + AluJo SINE Alu 16 287 -25 569 108 24 0 chr6 103082633 103082716 -86196838 - HY1 scRNA scRNA -26 86 2 23 33 0 0 chr6 103082817 103082847 -86196707 + AT_rich Low_complexity Low_complexity 1 30 0 673 229 202 14 chr6 103083044 103083267 -86196287 + LTR41 LTR ERVL 1 265 -508 762 208 10 99 chr6 103083446 103083659 -86195895 + LTR41 LTR ERVL 507 737 -36 2480 72 0 0 chr6 103083659 103083964 -86195590 - AluY SINE Alu -6 305 1 2164 107 7 13 chr6 103083964 103084273 -86195281 - AluSx SINE Alu -5 307 1 762 208 10 99 chr6 103084273 103084351 -86195203 + LTR41 LTR ERVL 735 773 0 1976 126 17 3 chr6 103084368 103084661 -86194893 + AluSq SINE Alu 1 297 -16 382 240 131 22 chr6 103084945 103085258 -86194296 + L1M4 LINE L1 2878 3224 -2922 869 118 25 0 chr6 103085327 103085446 -86194108 + FLAM_C SINE Alu 1 122 -11 2446 80 0 3 chr6 103085558 103085870 -86193684 + AluY SINE Alu 1 311 0 443 272 37 31 chr6 103085888 103085974 -86193580 + L1M4 LINE L1 3662 3746 -2400 1922 132 11 0 chr6 103085974 103086246 -86193308 + AluSx SINE Alu 21 295 -17 443 272 37 31 chr6 103086246 103086350 -86193204 + L1M4 LINE L1 3746 3853 -2293 2306 88 0 25 chr6 103086350 103086668 -86192886 + AluY SINE Alu 1 310 -1 1728 166 10 14 chr6 103086676 103086972 -86192582 + AluSx SINE Alu 1 295 -17 1694 152 0 77 chr6 103086989 103087312 -86192242 + AluJb SINE Alu 5 302 -10 1793 124 84 7 chr6 103087658 103087931 -86191623 + AluSc SINE Alu 1 294 -15 550 86 49 0 chr6 103088186 103088267 -86191287 + AluSg/x SINE Alu 213 297 -12 483 170 8 2 chr6 103088515 103088759 -86190795 + AluJo SINE Alu 1 299 -13 180 343 10 10 chr6 103088828 103088930 -86190624 + L2 LINE L2 2648 2749 -565 1803 104 55 104 chr6 103088934 103089261 -86190293 + AluSx SINE Alu 1 311 -1 2184 121 0 0 chr6 103089320 103089617 -86189937 + AluSx SINE Alu 1 297 -15 1864 140 42 39 chr6 103089817 103090124 -86189430 - AluJb SINE Alu -4 308 1 796 222 18 0 chr6 103090140 103090311 -86189243 - MER5B DNA MER1_type 0 178 5 212 311 71 53 chr6 103091041 103091266 -86188288 + L2 LINE L2 2826 3054 -218 2245 110 3 0 chr6 103094236 103094528 -86185026 + AluSx SINE Alu 1 293 -19 197 258 42 133 chr6 103094556 103094595 -86184959 - L2 LINE L2 0 3272 3231 2185 132 0 0 chr6 103094595 103094905 -86184649 + AluSg SINE Alu 1 310 0 197 258 42 133 chr6 103094905 103094985 -86184569 - L2 LINE L2 -41 3231 3164 308 314 25 8 chr6 103095111 103095232 -86184322 + L1M4 LINE L1 4972 5094 -1052 1914 152 0 19 chr6 103095278 103095593 -86183961 + AluJo SINE Alu 1 309 -3 199 312 90 32 chr6 103095738 103095799 -86183755 - L2 LINE L2 -1148 2166 2110 6696 102 35 9 chr6 103095799 103096744 -86182810 - LTR5 LTR ERVK 0 969 1 199 312 90 32 chr6 103096744 103096871 -86182683 - L2 LINE L2 -1204 2110 1967 291 28 0 0 chr6 103096871 103096907 -86182647 + (CA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr6 103096910 103096933 -86182621 + AT_rich Low_complexity Low_complexity 1 23 0 374 203 0 13 chr6 103096936 103097015 -86182539 + L1M4 LINE L1 4510 4587 -1559 199 125 62 0 chr6 103097054 103097102 -86182452 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 26 0 0 0 chr6 103097317 103097343 -86182211 + AT_rich Low_complexity Low_complexity 1 26 0 1784 184 7 7 chr6 103098699 103099009 -86180545 + AluJo SINE Alu 1 310 -2 1793 154 17 7 chr6 103099033 103099326 -86180228 + AluJb SINE Alu 8 303 -9 306 212 30 0 chr6 103099326 103099425 -86180129 + CT-rich Low_complexity Low_complexity 3 104 0 423 0 0 0 chr6 103100138 103100185 -86179369 + (TG)n Simple_repeat Simple_repeat 2 48 0 1388 160 0 5 chr6 103100185 103100404 -86179150 - AluSx SINE Alu -31 281 64 405 0 0 0 chr6 103101516 103101561 -86177993 + (TG)n Simple_repeat Simple_repeat 2 46 0 2314 88 0 10 chr6 103101562 103101859 -86177695 - AluSx SINE Alu -18 294 1 228 35 0 0 chr6 103101948 103101977 -86177577 + (TAG)n Simple_repeat Simple_repeat 1 29 0 748 162 0 0 chr6 103101977 103102088 -86177466 - FLAM_A SINE Alu -22 120 10 201 269 129 32 chr6 103102158 103102251 -86177303 - MIR3 SINE MIR -15 193 92 567 266 59 97 chr6 103102932 103103032 -86176522 + HERVL LTR ERVL 2265 2367 -3287 1616 162 0 26 chr6 103103032 103103303 -86176251 + AluSx SINE Alu 31 294 -18 567 266 59 97 chr6 103103303 103103541 -86176013 + HERVL LTR ERVL 2367 2590 -3064 2494 60 0 3 chr6 103103558 103103856 -86175698 + AluY SINE Alu 1 297 -14 2140 92 7 7 chr6 103103857 103104150 -86175404 + AluY SINE Alu 2 294 -17 2129 106 14 7 chr6 103104194 103104487 -86175067 + AluSq SINE Alu 1 295 -18 197 116 0 23 chr6 103104578 103104621 -86174933 + (TA)n Simple_repeat Simple_repeat 2 43 0 3320 292 75 25 chr6 103104730 103105311 -86174243 + HERVL LTR ERVL 2617 3168 -2596 1765 138 144 6 chr6 103105311 103105631 -86173923 + THE1B LTR MaLR 1 364 0 3320 292 75 25 chr6 103105631 103106859 -86172695 + HERVL LTR ERVL 3168 4575 -1189 302 263 42 17 chr6 103106864 103106982 -86172572 + L1M4 LINE L1 3575 3695 -2451 1604 95 9 9 chr6 103106986 103107196 -86172358 + AluSq SINE Alu 1 210 -103 746 214 156 16 chr6 103108205 103108397 -86171157 + MER20 DNA MER1_type 1 219 0 459 282 65 42 chr6 103108397 103108613 -86170941 + L2 LINE L2 2871 3091 -181 769 286 4 18 chr6 103108854 103109081 -86170473 - MIR SINE MIR -10 252 29 607 177 0 26 chr6 103109539 103109652 -86169902 + MER3 DNA MER1_type 7 116 -93 1894 172 20 0 chr6 103109905 103110207 -86169347 - AluJb SINE Alu -4 308 1 30 45 0 0 chr6 103110454 103110498 -86169056 + AT_rich Low_complexity Low_complexity 1 44 0 7168 62 3 0 chr6 103110856 103112008 -86167546 + L1PA7 LINE L1 4997 6152 -2 210 280 147 27 chr6 103112874 103113024 -86166530 - MIR SINE MIR -42 220 53 405 58 0 0 chr6 103113107 103113159 -86166395 + (CA)n Simple_repeat Simple_repeat 2 53 0 1582 106 135 0 chr6 103113698 103113943 -86165611 + AluSx SINE Alu 27 304 -8 396 0 0 0 chr6 103114382 103114426 -86165128 + (TG)n Simple_repeat Simple_repeat 1 44 0 327 257 145 29 chr6 103115901 103116142 -86163412 - MER102b DNA MER1_type 0 341 73 210 320 55 8 chr6 103116348 103116476 -86163078 + MIR SINE MIR 52 185 -77 214 221 23 93 chr6 103116496 103116582 -86162972 + L2 LINE L2 3215 3294 -19 2070 135 26 3 chr6 103117545 103117848 -86161706 - AluJb SINE Alu -2 310 1 1186 165 33 0 chr6 103119533 103119745 -86159809 + MER20 DNA MER1_type 1 219 0 198 103 0 0 chr6 103121285 103121314 -86158240 + (T)n Simple_repeat Simple_repeat 1 29 0 333 0 0 0 chr6 103121714 103121751 -86157803 + (TG)n Simple_repeat Simple_repeat 1 37 0 303 28 0 0 chr6 103122573 103122609 -86156945 + (CA)n Simple_repeat Simple_repeat 2 37 0 299 224 147 35 chr6 103123694 103123810 -86155744 + MER5B DNA MER1_type 44 172 -6 1285 186 98 3 chr6 103124729 103125025 -86154529 - MER33 DNA MER1_type 0 324 1 2501 144 24 59 chr6 103125440 103125980 -86153574 + LTR10A LTR ERV1 25 545 -64 337 314 102 8 chr6 103125994 103126112 -86153442 - L2 LINE L2 -7 3265 3137 1788 163 0 20 chr6 103126273 103126567 -86152987 - AluJb SINE Alu -24 288 1 21 71 0 0 chr6 103127424 103127466 -86152088 + AT_rich Low_complexity Low_complexity 1 42 0 526 281 54 48 chr6 103127790 103127859 -86151695 - L2 LINE L2 0 3313 3246 288 0 0 0 chr6 103127859 103127891 -86151663 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1726 143 17 34 chr6 103127895 103128189 -86151365 + AluJb SINE Alu 1 289 -23 526 281 54 48 chr6 103128189 103128315 -86151239 - L2 LINE L2 -69 3244 3120 1846 89 19 12 chr6 103128315 103128573 -86150981 + L1PA10 LINE L1 5901 6160 -8 526 281 54 48 chr6 103128573 103128705 -86150849 - L2 LINE L2 -193 3120 2978 397 247 294 0 chr6 103128713 103128859 -86150695 + MER5A DNA MER1_type 1 189 0 206 316 204 18 chr6 103128868 103129093 -86150461 - L2 LINE L2 -375 2939 2673 859 184 61 0 chr6 103129154 103129317 -86150237 + MER63A DNA MER1_type 1 173 -37 619 122 0 22 chr6 103129490 103129580 -86149974 - FRAM SINE Alu -18 158 71 1726 136 42 25 chr6 103131251 103131537 -86148017 + AluSx SINE Alu 1 291 -21 808 201 6 6 chr6 103131885 103131970 -86147584 + MER5B DNA MER1_type 10 94 -84 2154 109 7 3 chr6 103131970 103132273 -86147281 + AluSx SINE Alu 1 304 -8 808 201 6 6 chr6 103132273 103132356 -86147198 + MER5B DNA MER1_type 93 178 0 287 253 202 25 chr6 103132763 103132913 -86146641 - MER5B DNA MER1_type 0 178 16 464 214 182 104 chr6 103132914 103133134 -86146420 + MIR SINE MIR 9 245 -17 275 276 40 0 chr6 103133177 103133253 -86146301 + MIR SINE MIR 173 251 -11 283 233 167 0 chr6 103133570 103133660 -86145894 - MIR SINE MIR -56 152 48 345 24 0 0 chr6 103134764 103134806 -86144748 + (GA)n Simple_repeat Simple_repeat 1 42 0 545 286 79 25 chr6 103136261 103136480 -86143074 + MIR SINE MIR 40 259 -3 387 225 25 92 chr6 103137620 103137740 -86141814 + MIR SINE MIR 22 133 -129 694 265 121 5 chr6 103138023 103138246 -86141308 + MIR SINE MIR 14 262 0 569 193 42 17 chr6 103138331 103138450 -86141104 + FLAM_A SINE Alu 1 122 -11 23 33 0 0 chr6 103138450 103138480 -86141074 + AT_rich Low_complexity Low_complexity 1 30 0 273 320 132 46 chr6 103138958 103139155 -86140399 - L2 LINE L2 0 3272 3059 297 330 21 56 chr6 103139292 103139525 -86140029 - L2 LINE L2 -555 2759 2535 2365 75 7 0 chr6 103139718 103140013 -86139541 - AluY SINE Alu -14 297 1 450 0 0 0 chr6 103142589 103142639 -86136915 + (CA)n Simple_repeat Simple_repeat 2 51 0 25 51 0 0 chr6 103143164 103143203 -86136351 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr6 103143662 103143693 -86135861 + AT_rich Low_complexity Low_complexity 1 31 0 1409 70 0 22 chr6 103143760 103143945 -86135609 + AluSg/x SINE Alu 118 298 -14 27 29 0 0 chr6 103143979 103144013 -86135541 + AT_rich Low_complexity Low_complexity 1 34 0 208 196 294 54 chr6 103144271 103144363 -86135191 + MIR SINE MIR 108 221 -41 3460 160 78 17 chr6 103144743 103145491 -86134063 - L1MC2 LINE L1 -10 6334 5542 2184 96 0 45 chr6 103145676 103145988 -86133566 - AluSp SINE Alu -15 298 1 208 143 0 0 chr6 103146253 103146288 -86133266 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 2267 116 0 0 chr6 103146713 103147014 -86132540 - AluSx SINE Alu -9 303 3 599 304 6 0 chr6 103147067 103147228 -86132326 - MIR SINE MIR 0 262 101 200 216 0 0 chr6 103147401 103147438 -86132116 + (CA)n Simple_repeat Simple_repeat 1 37 0 2232 103 0 17 chr6 103147706 103148006 -86131548 + AluSx SINE Alu 1 295 -17 1299 174 123 16 chr6 103148105 103148358 -86131196 + AluJo SINE Alu 3 282 -30 23 68 0 0 chr6 103149452 103149496 -86130058 + AT_rich Low_complexity Low_complexity 1 44 0 1751 157 48 3 chr6 103150025 103150319 -86129235 - AluJo SINE Alu 0 312 6 290 377 63 9 chr6 103150454 103150677 -86128877 + L2 LINE L2 2825 3059 -213 234 209 0 0 chr6 103150792 103150835 -86128719 + L2 LINE L2 3271 3313 0 34 24 0 0 chr6 103151080 103151121 -86128433 + AT_rich Low_complexity Low_complexity 1 41 0 344 307 174 32 chr6 103151121 103151558 -86127996 - L2 LINE L2 -6 3307 2809 29 0 0 0 chr6 103151792 103151821 -86127733 + AT_rich Low_complexity Low_complexity 1 29 0 1754 166 13 13 chr6 103152284 103152586 -86126968 + AluJb SINE Alu 1 302 -10 243 0 0 0 chr6 103153286 103153313 -86126241 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 460 232 9 9 chr6 103153314 103153426 -86126128 - L2 LINE L2 -13 3300 3189 490 192 10 0 chr6 103153489 103153593 -86125961 + L1MB2 LINE L1 6032 6136 -35 806 242 130 5 chr6 103153636 103153851 -86125703 - MIR SINE MIR -4 258 17 284 143 0 0 chr6 103154122 103154164 -86125390 - 5S rRNA rRNA -79 42 1 222 204 23 0 chr6 103154746 103154790 -86124764 + GA-rich Low_complexity Low_complexity 4 48 0 21 0 0 0 chr6 103155244 103155265 -86124289 + AT_rich Low_complexity Low_complexity 1 21 0 423 295 278 26 chr6 103155443 103155759 -86123795 + L3 LINE CR1 644 879 -698 1835 171 3 3 chr6 103155759 103156051 -86123503 + AluJb SINE Alu 1 292 -20 423 295 278 26 chr6 103156051 103156202 -86123352 + L3 LINE CR1 879 1229 -348 270 326 12 0 chr6 103156261 103156347 -86123207 + L3 LINE CR1 1486 1572 -5 25 51 0 0 chr6 103157121 103157160 -86122394 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr6 103157411 103157447 -86122107 + AT_rich Low_complexity Low_complexity 1 36 0 316 293 91 97 chr6 103158065 103158396 -86121158 - L2 LINE L2 0 3272 2944 738 249 58 97 chr6 103159016 103159397 -86120157 + MLT1J2 LTR MaLR 44 409 -41 21 36 0 0 chr6 103159408 103159436 -86120118 + AT_rich Low_complexity Low_complexity 1 28 0 11344 186 38 33 chr6 103159436 103160572 -86118982 - L1MA9 LINE L1 -38 6274 5145 2218 107 0 3 chr6 103160572 103160871 -86118683 - AluSg SINE Alu -12 298 1 11344 186 38 33 chr6 103160871 103163429 -86116125 - L1MA9 LINE L1 -1167 5145 2560 916 269 42 13 chr6 103163599 103163911 -86115643 - LTR16B LTR ERVL -143 321 1 589 288 212 40 chr6 103163918 103164602 -86114952 + L2 LINE L2 1429 2230 -1084 293 373 131 18 chr6 103164628 103165070 -86114484 + L2 LINE L2 2480 2971 -343 212 239 0 0 chr6 103165310 103165356 -86114198 + L2 LINE L2 3268 3313 0 426 296 22 62 chr6 103167018 103167292 -86112262 + L1MC4 LINE L1 7780 8042 0 264 295 29 43 chr6 103168502 103168641 -86110913 - MIR SINE MIR -16 246 110 410 304 107 0 chr6 103168649 103168817 -86110737 - MIR SINE MIR -6 256 71 2344 177 24 9 chr6 103169261 103169714 -86109840 + L1MB5 LINE L1 5709 6168 -6 705 302 112 10 chr6 103170094 103170505 -86109049 + L1MC/D LINE L1 5367 5819 -1989 2123 141 10 0 chr6 103170797 103171096 -86108458 - AluSx SINE Alu -7 305 4 1103 188 111 34 chr6 103171225 103171523 -86108031 + MER5C DNA MER1_type 1 321 -3 25 0 0 0 chr6 103172634 103172659 -86106895 + AT_rich Low_complexity Low_complexity 1 25 0 393 95 16 0 chr6 103172659 103172722 -86106832 - L1PB2 LINE L1 -3 6148 6085 2554 78 10 0 chr6 103172724 103173121 -86106433 - L1PB2 LINE L1 -155 5996 5555 3960 200 55 8 chr6 103173123 103174165 -86105389 + L1 LINE L1 4232 5322 -824 345 140 0 0 chr6 103174165 103174222 -86105332 + (A)n Simple_repeat Simple_repeat 1 57 0 1455 112 25 0 chr6 103174354 103174595 -86104959 + L1P5 LINE L1 5311 5557 -594 271 303 0 11 chr6 103175053 103175142 -86104412 + CT-rich Low_complexity Low_complexity 2 89 0 553 248 137 60 chr6 103175757 103175870 -86103684 + MIR SINE MIR 1 104 -158 1811 174 11 0 chr6 103175870 103176157 -86103397 + AluJo SINE Alu 1 290 -22 553 248 137 60 chr6 103176157 103176277 -86103277 + MIR SINE MIR 104 252 -10 183 346 161 0 chr6 103176612 103176742 -86102812 + MIR SINE MIR 63 213 -49 28 29 0 0 chr6 103178263 103178298 -86101256 + AT_rich Low_complexity Low_complexity 1 35 0 1018 141 32 16 chr6 103178299 103178484 -86101070 - L1PA13 LINE L1 -9 6154 5967 2064 123 24 0 chr6 103178489 103178781 -86100773 + AluSx SINE Alu 5 303 -9 1481 219 80 35 chr6 103179933 103180445 -86099109 + L1ME3A LINE L1 5629 6163 -7 192 328 151 25 chr6 103181319 103181438 -86098116 + L2 LINE L2 3127 3260 -12 1084 147 139 17 chr6 103181623 103181918 -86097636 - MER33 DNA MER1_type 0 324 1 2379 90 0 0 chr6 103182032 103182331 -86097223 + AluSx SINE Alu 1 299 -13 226 254 16 32 chr6 103183323 103183386 -86096168 - MIR3 SINE MIR -5 203 142 465 114 80 0 chr6 103183431 103183519 -86096035 - MER5A DNA MER1_type -77 112 18 190 278 14 42 chr6 103183556 103183628 -86095926 - L3 LINE CR1 -101 1476 1407 712 324 115 25 chr6 103183681 103184116 -86095438 - L3 LINE CR1 -312 1265 792 463 186 42 0 chr6 103184403 103184521 -86095033 - L1ME3A LINE L1 -208 5962 5840 812 263 85 0 chr6 103184535 103184771 -86094783 - MIR SINE MIR -5 257 2 1162 267 20 54 chr6 103184810 103184956 -86094598 - L1ME3A LINE L1 -344 5818 5669 4469 93 29 9 chr6 103184956 103185610 -86093944 - L1PA13 LINE L1 -14 6149 5483 1162 267 20 54 chr6 103185610 103185965 -86093589 - L1ME3A LINE L1 -493 5669 5334 2416 83 0 0 chr6 103186166 103186466 -86093088 - AluY SINE Alu -11 300 1 1718 132 4 0 chr6 103186517 103186768 -86092786 + AluSx SINE Alu 1 252 -60 7657 87 5 30 chr6 103186887 103188082 -86091472 - HERVH LTR ERV1 -5014 2699 1535 38 0 0 0 chr6 103188316 103188354 -86091200 + AT_rich Low_complexity Low_complexity 1 38 0 311 293 28 9 chr6 103188354 103188460 -86091094 + L1MC4 LINE L1 6614 6721 -1321 312 359 84 0 chr6 103189182 103189313 -86090241 + MLT1J LTR MaLR 1 142 -369 279 330 34 17 chr6 103189484 103189602 -86089952 - L2 LINE L2 -357 2956 2837 1460 125 110 0 chr6 103189729 103189993 -86089561 - MER4A-int LTR ERV1 -6305 293 1 1591 128 8 84 chr6 103189996 103190370 -86089184 - MER4A LTR ERV1 0 664 261 913 79 86 0 chr6 103191161 103191301 -86088253 - MER41A-int LTR ERV1 -7604 152 1 271 117 338 0 chr6 103191310 103191387 -86088167 - MER41A-int LTR ERV1 -7653 103 1 3908 102 9 0 chr6 103191387 103191936 -86087618 - MER41A LTR ERV1 0 554 1 444 188 29 29 chr6 103191941 103192111 -86087443 - LTR23-int LTR ERV1 -3028 2095 1926 731 292 50 26 chr6 103192481 103192861 -86086693 - L1MCc LINE L1 -5958 465 77 417 306 57 35 chr6 103193118 103193490 -86086064 - L1MEc LINE L1 -4580 1816 1437 325 238 139 0 chr6 103193794 103193895 -86085659 - MLT1-int LTR MaLR -320 1051 937 435 306 20 7 chr6 103194024 103194171 -86085383 - MLT1-int LTR MaLR -518 853 705 750 254 64 37 chr6 103194373 103194700 -86084854 - MLT1-int LTR MaLR -781 590 255 422 307 36 7 chr6 103194960 103195100 -86084454 - MIR SINE MIR -111 151 8 1750 176 10 0 chr6 103195332 103195628 -86083926 - AluJb SINE Alu -8 304 6 454 220 31 107 chr6 103195814 103195960 -86083594 + L1MEc LINE L1 2191 2281 -3934 1998 137 13 0 chr6 103195960 103196273 -86083281 + L1PA16 LINE L1 5836 6152 -14 454 220 31 107 chr6 103196273 103196395 -86083159 + L1MEc LINE L1 2281 2411 -3804 237 344 122 22 chr6 103196553 103196733 -86082821 + L2 LINE L2 1164 1361 -1953 209 326 30 91 chr6 103196764 103196896 -86082658 - L2 LINE L2 -12 3260 3137 1042 145 0 16 chr6 103197029 103197215 -86082339 - MLT1B LTR MaLR -16 374 192 407 111 0 14 chr6 103197245 103197317 -86082237 + (TTTTC)n Simple_repeat Simple_repeat 5 75 0 1966 121 13 36 chr6 103197330 103197637 -86081917 - AluJb SINE Alu -7 305 6 474 239 68 8 chr6 103198370 103198487 -86081067 + L2 LINE L2 3189 3312 -1 22 65 0 0 chr6 103198518 103198549 -86081005 + AT_rich Low_complexity Low_complexity 1 31 0 367 267 0 52 chr6 103198615 103198731 -86080823 + MLT1J2 LTR MaLR 37 146 -304 462 200 70 0 chr6 103199504 103199619 -86079935 + MLT1J2 LTR MaLR 4 126 -324 451 253 90 24 chr6 103199658 103199824 -86079730 + MLT1J1 LTR MaLR 204 380 -66 299 275 8 23 chr6 103199909 103200040 -86079514 - LTR16C LTR ERVL 0 491 363 499 262 81 48 chr6 103200201 103200302 -86079252 - L1MEc LINE L1 -3653 2562 2466 1834 167 20 0 chr6 103200302 103200607 -86078947 - AluJb SINE Alu -1 311 1 499 262 81 48 chr6 103200607 103200926 -86078628 - L1MEc LINE L1 -3749 2466 2173 663 283 123 43 chr6 103201098 103201636 -86077918 - L1MEc LINE L1 -4445 1951 1371 191 296 102 43 chr6 103201776 103201822 -86077732 - L2 LINE L2 -978 2336 2294 3189 169 15 31 chr6 103201822 103202437 -86077117 + MER6A DNA MER2_type 1 605 0 191 296 102 43 chr6 103202437 103202576 -86076978 - L2 LINE L2 -1020 2294 2140 708 251 73 9 chr6 103202945 103203177 -86076377 - MLT1H LTR MaLR -321 228 1 1797 147 7 46 chr6 103204141 103204447 -86075107 + AluSx SINE Alu 1 294 -18 482 96 0 0 chr6 103204448 103204521 -86075033 + AluSp/q SINE Alu 236 308 -5 428 262 111 0 chr6 103205590 103205762 -86073792 + L1M4 LINE L1 4742 4932 -1214 680 234 105 60 chr6 103205827 103206160 -86073394 - MLT1A2 LTR MaLR -26 348 1 702 236 23 14 chr6 103206177 103206397 -86073157 + L1M4 LINE L1 4938 5159 -987 336 132 44 0 chr6 103206423 103206491 -86073063 + AluS SINE Alu 227 297 -5 557 297 115 35 chr6 103206624 103207025 -86072529 + L2 LINE L2 1585 2017 -1297 367 272 0 0 chr6 103207725 103207817 -86071737 - MIR SINE MIR -89 173 82 783 232 14 120 chr6 103207846 103208212 -86071342 + MLT1A1 LTR MaLR 1 327 -38 353 280 21 54 chr6 103208405 103208591 -86070963 - L1M4 LINE L1 -1446 4700 4521 229 290 70 61 chr6 103208843 103209001 -86070553 - L1M4 LINE L1 -1907 4239 4084 1792 134 57 7 chr6 103209001 103209284 -86070270 - AluSc SINE Alu -12 297 1 229 290 70 61 chr6 103209284 103209470 -86070084 - L1M4 LINE L1 -2062 4084 3892 1528 133 30 15 chr6 103212058 103212329 -86067225 - LTR24B LTR ERV1 -239 337 63 22 88 0 0 chr6 103213311 103213368 -86066186 + AT_rich Low_complexity Low_complexity 1 57 0 2015 127 17 0 chr6 103213852 103214144 -86065410 + AluSc SINE Alu 1 297 -12 840 156 27 137 chr6 103214246 103214509 -86065045 + MER2 DNA MER2_type 112 345 0 1594 191 88 3 chr6 103214513 103214864 -86064690 - MER34C LTR ERV1 -204 381 1 343 314 42 0 chr6 103214869 103214987 -86064567 + MIR SINE MIR 112 234 -28 4328 160 16 0 chr6 103214989 103215700 -86063854 + MER72 LTR ERV1 1 722 0 744 174 91 87 chr6 103215967 103216231 -86063323 - MLT1B LTR MaLR -125 265 1 323 298 78 78 chr6 103216251 103216469 -86063085 + L1MEd LINE L1 268 485 -5634 6622 15 4 0 chr6 103216484 103217273 -86062281 - L1PA3 LINE L1 -2 6153 5362 2068 161 12 9 chr6 103217408 103217750 -86061804 + MER61A LTR ERV1 1 343 0 2122 187 108 16 chr6 103217750 103218385 -86061169 + MER61A-int LTR ERV1 1 777 -4440 270 149 0 0 chr6 103218378 103218425 -86061129 + MER61A-int LTR ERV1 1320 1366 -3851 * 399 21 0 0 chr6 103218441 103218489 -86061065 + (TG)n Simple_repeat Simple_repeat 1 48 0 3930 107 29 36 chr6 103218489 103219219 -86060335 + MER61A-int LTR ERV1 1462 2186 -3031 305 43 109 0 chr6 103219213 103219259 -86060295 + MER61A-int LTR ERV1 2591 2641 -2576 * 1656 155 9 43 chr6 103219403 103219752 -86059802 - MER4B LTR ERV1 -273 337 1 3003 179 61 26 chr6 103219879 103220579 -86058975 - LTR8A LTR ERV1 0 727 3 350 314 97 20 chr6 103220682 103220930 -86058624 + L2 LINE L2 2853 3119 -194 11378 151 26 14 chr6 103221723 103223913 -86055641 + L1PA12 LINE L1 1085 3314 -4270 328 151 161 0 chr6 103223917 103224010 -86055544 + AluSq/x SINE Alu 1 108 -194 2237 73 7 7 chr6 103225246 103225532 -86054022 + AluSq SINE Alu 23 308 -5 679 242 44 88 chr6 103227653 103228052 -86051502 + MLT2C1 LTR ERVL 18 663 0 541 339 131 34 chr6 103229177 103229711 -86049843 + L1PA13 LINE L1 789 1374 -6200 288 235 0 25 chr6 103229877 103229958 -86049596 + L1PA13 LINE L1 2101 2179 -5402 180 0 0 0 chr6 103230097 103230117 -86049437 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1183 310 38 8 chr6 103230224 103230746 -86048808 + L1PA13 LINE L1 2185 2722 -4859 295 336 8 47 chr6 103231778 103231906 -86047648 - L2 LINE L2 0 3313 3191 449 230 182 14 chr6 103231915 103232063 -86047491 + MER5A DNA MER1_type 10 182 -7 2371 71 0 62 chr6 103232150 103232472 -86047082 + AluY SINE Alu 1 302 -9 645 144 10 0 chr6 103232508 103232612 -86046942 + AluJb SINE Alu 1 105 -207 244 324 0 18 chr6 103232843 103232954 -86046600 + L2 LINE L2 3142 3250 -63 266 229 84 36 chr6 103233192 103233275 -86046279 - MIR SINE MIR -72 190 104 28 61 0 0 chr6 103234550 103234599 -86044955 + AT_rich Low_complexity Low_complexity 1 49 0 1587 180 36 13 chr6 103234611 103234916 -86044638 - AluJo SINE Alu 0 312 1 203 219 141 0 chr6 103235339 103235403 -86044151 - L2 LINE L2 -18 3254 3182 364 273 180 0 chr6 103239549 103239677 -86039877 - MER5A DNA MER1_type -1 188 38 357 277 85 8 chr6 103240073 103240203 -86039351 + MIR SINE MIR 2 141 -121 352 390 18 0 chr6 103240466 103240635 -86038919 - L2 LINE L2 -375 2939 2768 544 191 33 82 chr6 103240718 103240809 -86038745 - MIR SINE MIR -15 247 153 1188 192 116 29 chr6 103240809 103241085 -86038469 - AluJb SINE Alu -1 301 2 544 191 33 82 chr6 103241085 103241102 -86038452 - MIR SINE MIR -109 153 137 2217 129 3 30 chr6 103241102 103241473 -86038081 - MER46B DNA MER2_type 0 236 1 544 191 33 82 chr6 103241473 103241546 -86038008 - MIR SINE MIR -125 137 74 3712 144 45 24 chr6 103242880 103243664 -86035890 - MER4D LTR ERV1 0 872 12 630 292 145 30 chr6 103243707 103244080 -86035474 - L2 LINE L2 -7 3306 2891 3647 129 7 19 chr6 103244091 103244672 -86034882 + MER4B LTR ERV1 1 574 -36 290 329 29 7 chr6 103244719 103244859 -86034695 - L2 LINE L2 -454 2860 2718 269 167 0 0 chr6 103244886 103244934 -86034620 - L1MC4 LINE L1 0 8042 7995 1469 114 93 29 chr6 103244934 103245214 -86034340 + THE1C LTR MaLR 1 298 -77 1051 171 43 0 chr6 103245218 103245481 -86034073 - L1MC4 LINE L1 -642 7400 7083 1739 293 153 35 chr6 103245482 103246815 -86032739 - L2 LINE L2 -635 2679 1190 2175 91 3 14 chr6 103246868 103247200 -86032354 - AluSx SINE Alu 0 329 1 1950 149 3 13 chr6 103247462 103247778 -86031776 + AluSq SINE Alu 1 313 0 850 260 13 13 chr6 103247932 103248167 -86031387 + MIR SINE MIR 8 242 -20 1672 207 10 3 chr6 103248320 103248629 -86030925 - AluJo SINE Alu -1 311 1 308 311 68 14 chr6 103249528 103249676 -86029878 + MER5B DNA MER1_type 3 158 -20 200 233 0 0 chr6 103249736 103249779 -86029775 + (TA)n Simple_repeat Simple_repeat 1 43 0 494 288 86 65 chr6 103249915 103250014 -86029540 - MLT1J LTR MaLR -2 509 414 2290 81 3 0 chr6 103250014 103250318 -86029236 + AluSx SINE Alu 1 305 0 494 288 86 65 chr6 103250318 103250603 -86028951 - MLT1J LTR MaLR -97 414 116 556 305 47 30 chr6 103250831 103251064 -86028490 - MIR SINE MIR -6 256 20 1979 89 3 57 chr6 103253725 103254007 -86025547 + AluSq SINE Alu 28 294 -19 250 167 19 19 chr6 103254231 103254285 -86025269 - L2 LINE L2 -74 3239 3186 734 271 113 22 chr6 103254289 103254651 -86024903 - L2 LINE L2 -406 2908 2514 258 227 120 13 chr6 103254980 103255055 -86024499 + MIR3 SINE MIR 119 201 -7 2051 134 10 0 chr6 103255799 103256098 -86023456 + AluSx SINE Alu 1 302 -10 224 278 78 11 chr6 103256805 103256895 -86022659 - MIR3 SINE MIR -5 203 108 2379 109 0 0 chr6 103257037 103257339 -86022215 - AluSx SINE Alu -10 302 1 1929 207 73 69 chr6 103258267 103258818 -86020736 - MLT2B3 LTR ERVL -1 553 1 3371 187 30 30 chr6 103259851 103260638 -86018916 - L1ME1 LINE L1 -5 6161 5375 242 229 144 68 chr6 103260743 103260861 -86018693 - MER5A DNA MER1_type 0 189 63 840 136 8 8 chr6 103260861 103260993 -86018561 - AluJo SINE Alu -176 136 5 1542 171 29 14 chr6 103261176 103261451 -86018103 + MER1B DNA MER1_type 57 335 -4 842 205 24 38 chr6 103263739 103263949 -86015605 - L1MC4 LINE L1 -5 8037 7831 330 235 114 36 chr6 103263958 103264124 -86015430 - L1ME4a LINE L1 -16 6105 5927 247 243 81 0 chr6 103264153 103264227 -86015327 + MIR SINE MIR 2 81 -181 1659 209 45 43 chr6 103264227 103264673 -86014881 - MLT1C LTR MaLR 0 467 21 397 214 161 18 chr6 103264691 103264859 -86014695 + MIR SINE MIR 68 259 -3 383 191 45 76 chr6 103264879 103265036 -86014518 - L1ME4a LINE L1 -338 5783 5632 1509 184 86 4 chr6 103265073 103265351 -86014203 + AluJb SINE Alu 1 301 -11 2009 134 20 13 chr6 103266009 103266188 -86013366 - AluSx SINE Alu -4 308 125 387 0 0 0 chr6 103266188 103266231 -86013323 + (TG)n Simple_repeat Simple_repeat 2 44 0 2009 134 20 13 chr6 103266231 103266357 -86013197 - AluSx SINE Alu -187 125 1 1244 168 0 69 chr6 103267563 103268028 -86011526 - MLT1D LTR MaLR 0 505 6 347 278 46 0 chr6 103268031 103268139 -86011415 + L2 LINE L2 3200 3312 -1 2194 116 0 0 chr6 103268991 103269283 -86010271 + AluSx SINE Alu 1 292 -20 324 0 0 0 chr6 103269880 103269916 -86009638 + (CA)n Simple_repeat Simple_repeat 2 37 0 1306 174 43 79 chr6 103270102 103270406 -86009148 + AluJb SINE Alu 14 306 -6 1652 177 41 33 chr6 103270814 103271176 -86008378 + MLT1A1 LTR MaLR 1 365 0 392 335 55 0 chr6 103271597 103271761 -86007793 + MIR SINE MIR 90 262 0 205 284 45 23 chr6 103273149 103273237 -86006317 + MIR SINE MIR 108 197 -65 211 235 59 0 chr6 103274112 103274180 -86005374 + (TATATG)n Simple_repeat Simple_repeat 5 76 0 23 0 0 0 chr6 103274284 103274307 -86005247 + AT_rich Low_complexity Low_complexity 1 23 0 265 189 19 142 chr6 103274398 103274504 -86005050 - MIR SINE MIR -56 206 114 389 244 63 62 chr6 103274910 103275073 -86004481 - MER39 LTR ERV1 -353 354 1 2185 119 23 52 chr6 103275190 103275576 -86003978 + THE1C LTR MaLR 1 375 0 317 339 63 11 chr6 103275961 103276150 -86003404 + MIR SINE MIR 47 245 -17 338 214 155 0 chr6 103276552 103276636 -86002918 + MER5A DNA MER1_type 13 109 -80 343 131 66 0 chr6 103276989 103277050 -86002504 - MER39 LTR ERV1 -353 354 290 252 0 0 0 chr6 103277137 103277165 -86002389 + (CA)n Simple_repeat Simple_repeat 1 28 0 458 331 102 21 chr6 103277168 103277500 -86002054 + L2 LINE L2 2906 3264 -8 21 57 0 0 chr6 103278321 103278356 -86001198 + AT_rich Low_complexity Low_complexity 1 35 0 2389 126 6 30 chr6 103278739 103279104 -86000450 + THE1B LTR MaLR 1 356 -8 593 122 0 47 chr6 103279165 103279272 -86000282 + FRAM SINE Alu 72 173 -3 2286 163 72 54 chr6 103279300 103279878 -85999676 + LTR8A LTR ERV1 68 727 0 502 252 163 0 chr6 103280009 103280152 -85999402 + MLT1G1 LTR MaLR 8 174 -421 2770 149 17 9 chr6 103280152 103280694 -85998860 - MER41B LTR ERV1 0 554 1 1115 221 64 1 chr6 103280721 103281147 -85998407 + LTR54 LTR ERV1 1 403 0 966 239 104 48 chr6 103281150 103281523 -85998031 + MLT1G LTR MaLR 122 580 -10 2024 174 34 5 chr6 103281620 103282005 -85997549 - L1MB3 LINE L1 -7 6176 5781 468 143 13 0 chr6 103282006 103282083 -85997471 - AluJ/FLAM SINE Alu -233 79 2 2486 169 19 27 chr6 103282085 103282571 -85996983 - L1MB3 LINE L1 -405 5778 5297 216 0 0 0 chr6 103283842 103283866 -85995688 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 813 219 0 0 chr6 103283866 103284012 -85995542 - FRAM SINE Alu -30 146 1 2114 116 0 3 chr6 103284045 103284362 -85995192 + AluSg SINE Alu 1 316 0 810 116 8 0 chr6 103284467 103284596 -85994958 + L1MB3 LINE L1 6046 6175 -8 734 164 23 10 chr6 103284997 103285169 -85994385 - MSTC LTR MaLR 0 428 190 281 321 66 19 chr6 103285176 103285282 -85994272 - L2 LINE L2 -6 3266 3156 182 286 33 22 chr6 103285282 103285373 -85994181 - L3 LINE CR1 -191 1386 1295 497 286 14 7 chr6 103285385 103285532 -85994022 - MIR SINE MIR -40 222 75 294 294 235 0 chr6 103285560 103285679 -85993875 - L2 LINE L2 0 3272 3126 306 348 128 34 chr6 103285915 103286090 -85993464 - L2 LINE L2 -1 3271 3114 3352 162 7 11 chr6 103286090 103286707 -85992847 + L1MB5 LINE L1 5561 6174 0 306 348 128 34 chr6 103286707 103287007 -85992547 - L2 LINE L2 -158 3114 2653 331 309 21 0 chr6 103288068 103288162 -85991392 + MIR SINE MIR 29 124 -138 585 160 44 122 chr6 103288165 103288249 -85991305 - MER39 LTR ERV1 -1 706 642 1901 141 0 3 chr6 103288249 103288540 -85991014 + AluJb SINE Alu 1 290 -22 585 160 44 122 chr6 103288540 103288636 -85990918 - MER39 LTR ERV1 -65 642 540 587 192 232 46 chr6 103288660 103288811 -85990743 + Tigger7 DNA MER2_type 32 210 -495 * 1352 169 49 0 chr6 103288807 103289074 -85990480 + Tigger7 DNA MER2_type 2304 2583 -4 705 239 53 46 chr6 103289084 103289429 -85990125 - MER39 LTR ERV1 -199 508 1 434 226 39 0 chr6 103289429 103289531 -85990023 + MIR SINE MIR 123 228 -34 272 299 165 36 chr6 103290814 103291172 -85988382 - MLT1L LTR MaLR -4 611 208 1118 223 121 89 chr6 103291858 103292296 -85987258 + HAL1 LINE L1 1623 2094 -413 1658 179 92 12 chr6 103292296 103292632 -85986922 - MLT1A1 LTR MaLR -2 363 1 1118 223 121 89 chr6 103292632 103292915 -85986639 + HAL1 LINE L1 2094 2367 -140 318 141 70 0 chr6 103292947 103293018 -85986536 + HAL1 LINE L1 2292 2367 -140 2385 65 0 19 chr6 103294074 103294381 -85985173 - AluY SINE Alu -10 301 1 220 254 0 17 chr6 103294532 103294591 -85984963 + (TA)n Simple_repeat Simple_repeat 1 58 0 1870 159 10 0 chr6 103294839 103295157 -85984397 + AluJb SINE Alu 3 312 0 259 239 73 107 chr6 103296660 103296865 -85982689 - L1ME LINE L1 -335 5786 5589 279 168 62 18 chr6 103296900 103297013 -85982541 + (TATAA)n Simple_repeat Simple_repeat 3 120 0 3189 204 73 31 chr6 103297013 103297610 -85981944 + L1ME1 LINE L1 4397 4967 -1199 398 62 231 0 chr6 103297610 103297675 -85981879 - MADE1 DNA Mariner 0 80 1 3189 204 73 31 chr6 103297675 103298757 -85980797 + L1ME1 LINE L1 4967 6157 -9 425 321 144 46 chr6 103298965 103299535 -85980019 - L1 LINE L1 -1679 4649 4024 269 249 78 0 chr6 103299701 103299835 -85979719 - L1PA8A LINE L1 -297 5824 5676 515 138 0 0 chr6 103299838 103299918 -85979636 - MADE1 DNA Mariner 0 80 1 2804 166 43 0 chr6 103299942 103300565 -85978989 - L1M1 LINE L1 -513 5787 5137 1150 173 4 126 chr6 103300577 103300855 -85978699 - AluSx SINE Alu -66 246 3 5692 158 111 17 chr6 103300856 103302222 -85977332 - L1 LINE L1 -4065 1263 2 192 297 123 23 chr6 103302876 103303034 -85976520 + MIR SINE MIR 26 256 -6 478 261 64 27 chr6 103303439 103303627 -85975927 + MLT1J LTR MaLR 1 195 -316 275 123 206 14 chr6 103303695 103303768 -85975786 + MLT1J LTR MaLR 416 502 -9 703 270 9 17 chr6 103305110 103305340 -85974214 + L1ME1 LINE L1 5892 6119 -47 223 193 70 35 chr6 103305804 103305861 -85973693 + MIR SINE MIR 90 148 -114 21 36 0 0 chr6 103311212 103311240 -85968314 + AT_rich Low_complexity Low_complexity 1 28 0 210 91 0 0 chr6 103313173 103313206 -85966348 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 218 350 0 0 chr6 103313262 103313342 -85966212 + MIR SINE MIR 182 261 -1 276 30 0 0 chr6 103314053 103314086 -85965468 + (TG)n Simple_repeat Simple_repeat 2 34 0 25 0 0 0 chr6 103315523 103315548 -85964006 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr6 103315727 103315752 -85963802 + AT_rich Low_complexity Low_complexity 1 25 0 425 277 76 87 chr6 103316773 103317141 -85962413 + L1MEc LINE L1 199 562 -5643 381 258 99 7 chr6 103317289 103317433 -85962121 + L1MEc LINE L1 1540 1752 -824 388 253 126 19 chr6 103317857 103318126 -85961428 + L1MEc LINE L1 2201 2498 -3717 728 168 46 0 chr6 103318156 103318287 -85961267 - AluJo SINE Alu -175 137 1 1766 179 3 0 chr6 103318374 103318665 -85960889 - AluJo SINE Alu -20 292 1 1195 194 28 0 chr6 103318730 103318941 -85960613 - AluJo SINE Alu -95 217 1 599 280 117 8 chr6 103319063 103319438 -85960116 + L1MEc LINE L1 2727 3142 -3073 357 250 92 80 chr6 103319564 103320027 -85959527 + L1MEc LINE L1 3583 4037 -2178 1795 167 0 13 chr6 103320051 103320363 -85959191 - AluJo SINE Alu -2 310 3 2884 6 0 0 chr6 103320665 103320976 -85958578 - AluY SINE Alu 0 311 1 1201 62 25 0 chr6 103321414 103321575 -85957979 - L1MA2 LINE L1 0 6304 6140 428 270 70 0 chr6 103322176 103322291 -85957263 + MIR SINE MIR 30 152 -110 365 291 121 33 chr6 103322295 103322477 -85957077 + MIR SINE MIR 12 209 -53 279 349 32 32 chr6 103322572 103322698 -85956856 + L2 LINE L2 3183 3308 -5 23 0 0 0 chr6 103324226 103324249 -85955305 + AT_rich Low_complexity Low_complexity 1 23 0 2003 142 3 10 chr6 103324469 103324778 -85954776 + AluSx SINE Alu 1 307 -5 361 246 45 36 chr6 103325208 103325318 -85954236 - MIR SINE MIR -86 176 66 334 290 74 69 chr6 103325766 103325997 -85953557 + MIR SINE MIR 31 262 0 2239 222 71 29 chr6 103326075 103326664 -85952890 - MER90 LTR ERV1 0 614 1 212 261 0 0 chr6 103329344 103329390 -85950164 + A-rich Low_complexity Low_complexity 4 49 0 25 31 0 0 chr6 103329857 103329889 -85949665 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr6 103335019 103335042 -85944512 + AT_rich Low_complexity Low_complexity 1 23 0 264 322 148 43 chr6 103335378 103335544 -85944010 + MIR3 SINE MIR 15 192 -67 719 202 0 0 chr6 103335586 103335715 -85943839 - MER20 DNA MER1_type 0 219 91 248 206 11 211 chr6 103336223 103336398 -85943156 - L2 LINE L2 -1 3312 3173 658 264 93 68 chr6 103338488 103338985 -85940569 + MLT1J LTR MaLR 1 509 -2 427 187 148 13 chr6 103339163 103339318 -85940236 + L1ME4a LINE L1 5938 6113 -8 28 48 0 0 chr6 103339526 103339568 -85939986 + AT_rich Low_complexity Low_complexity 1 42 0 3314 253 226 9 chr6 103341192 103342487 -85937067 - L2 LINE L2 -845 2469 894 273 159 63 151 chr6 103344470 103344596 -85934958 - MIR3 SINE MIR -1 207 92 806 243 37 11 chr6 103345636 103345825 -85933729 + MIR SINE MIR 18 211 -51 1406 169 123 4 chr6 103346745 103347005 -85932549 - AluJo SINE Alu -21 291 1 21 36 0 0 chr6 103347559 103347587 -85931967 + AT_rich Low_complexity Low_complexity 1 28 0 2436 64 0 0 chr6 103348057 103348353 -85931201 - AluY SINE Alu -15 296 1 2987 192 38 48 chr6 103348433 103349093 -85930461 + MER82 DNA MER2_type 1 653 0 2319 89 0 0 chr6 103350839 103351131 -85928423 + AluY SINE Alu 1 292 -19 33 0 0 0 chr6 103351131 103351164 -85928390 + AT_rich Low_complexity Low_complexity 1 33 0 221 323 16 0 chr6 103352503 103352565 -85926989 - L2 LINE L2 -50 3222 3160 2381 97 0 0 chr6 103353149 103353458 -85926096 - AluSc SINE Alu 0 309 1 22 35 0 0 chr6 103353842 103353871 -85925683 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr6 103354356 103354387 -85925167 + AT_rich Low_complexity Low_complexity 1 31 0 193 239 0 22 chr6 103354515 103354561 -85924993 - MIR3 SINE MIR -32 176 132 40655 67 7 3 chr6 103354903 103361019 -85918535 + L1PA5 LINE L1 4 6148 -6 22 70 0 0 chr6 103361231 103361274 -85918280 + AT_rich Low_complexity Low_complexity 1 43 0 364 326 74 47 chr6 103361523 103361713 -85917841 - L2 LINE L2 -6 3266 3072 340 271 135 46 chr6 103361857 103362054 -85917500 - MIR SINE MIR -27 235 18 199 349 53 23 chr6 103362097 103362229 -85917325 + L2 LINE L2 2553 2688 -626 1549 187 29 4 chr6 103362275 103362570 -85916984 - AluJb SINE Alu 0 305 4 227 175 35 18 chr6 103362628 103362685 -85916869 + CT-rich Low_complexity Low_complexity 5 62 0 25 65 0 0 chr6 103362819 103362865 -85916689 + AT_rich Low_complexity Low_complexity 1 46 0 1114 293 89 20 chr6 103362894 103363352 -85916202 + HAL1 LINE L1 14 503 -2004 574 367 34 20 chr6 103363511 103363808 -85915746 - L3 LINE CR1 -808 769 469 21 0 0 0 chr6 103364200 103364221 -85915333 + AT_rich Low_complexity Low_complexity 1 21 0 199 0 65 0 chr6 103364613 103364644 -85914910 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr6 103364706 103364728 -85914826 + AT_rich Low_complexity Low_complexity 1 22 0 1206 226 83 39 chr6 103365099 103365506 -85914048 + L1MB7 LINE L1 5759 6183 -1 212 224 0 105 chr6 103365669 103365745 -85913809 - L3 LINE CR1 -1 1576 1509 622 280 81 0 chr6 103365799 103366010 -85913544 - MIR SINE MIR -5 257 30 517 224 213 38 chr6 103366350 103366533 -85913021 - MIR SINE MIR -3 259 45 258 271 110 59 chr6 103366813 103366931 -85912623 + MIR SINE MIR 20 143 -119 809 176 0 22 chr6 103367071 103367207 -85912347 - FLAM_C SINE Alu 0 133 1 237 323 56 99 chr6 103368633 103368955 -85910599 - L2 LINE L2 -1 3312 3005 2060 71 0 0 chr6 103368966 103369218 -85910336 + AluY SINE Alu 27 278 -33 468 0 0 0 chr6 103369218 103369270 -85910284 + (CA)n Simple_repeat Simple_repeat 1 52 0 1572 306 97 36 chr6 103369342 103370461 -85909093 - L2 LINE L2 -25 3288 1987 783 222 105 0 chr6 103370489 103370660 -85908894 + MER5A DNA MER1_type 1 189 0 1943 132 0 7 chr6 103371059 103371373 -85908181 - AluSx SINE Alu 0 312 1 307 328 25 17 chr6 103371745 103371864 -85907690 - MIR SINE MIR -82 180 61 328 292 234 19 chr6 103372162 103372419 -85907135 + L2 LINE L2 2065 2376 -938 342 200 50 0 chr6 103372420 103372500 -85907054 + Charlie7 DNA MER1_type 298 381 -2231 852 135 7 28 chr6 103373277 103373418 -85906136 - FLAM_C SINE Alu -5 138 1 22 35 0 0 chr6 103373773 103373802 -85905752 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr6 103374030 103374060 -85905494 + AT_rich Low_complexity Low_complexity 1 30 0 454 228 370 21 chr6 103375149 103375430 -85904124 - L2 LINE L2 0 3313 2935 2057 142 0 0 chr6 103375679 103375981 -85903573 - AluSx SINE Alu -10 302 1 261 323 55 16 chr6 103376147 103376274 -85903280 + MIR SINE MIR 13 144 -118 456 314 74 11 chr6 103376408 103376583 -85902971 - MIR3 SINE MIR -18 190 5 242 267 0 17 chr6 103377794 103377854 -85901700 + MIR SINE MIR 79 137 -71 * 514 291 70 26 chr6 103377844 103378071 -85901483 - MIR SINE MIR -25 237 1 264 343 0 0 chr6 103378786 103378856 -85900698 - L2 LINE L2 0 3272 3203 2858 13 0 0 chr6 103378889 103379201 -85900353 + AluYb8 SINE Alu 1 312 -6 276 325 140 37 chr6 103381006 103381277 -85898277 + L2 LINE L2 2153 2451 -863 310 248 59 20 chr6 103381654 103381755 -85897799 - L1MC4 LINE L1 -15 8027 7923 345 297 14 54 chr6 103382020 103382168 -85897386 + MLT1K LTR MaLR 445 586 -2 725 179 90 25 chr6 103382764 103382981 -85896573 - MER106B DNA MER1_type -1 1058 1 6876 107 48 53 chr6 103383137 103384374 -85895180 + Tigger3b DNA MER2_type 1 1231 0 2621 214 40 2 chr6 103384554 103385081 -85894473 + MLT2B3 LTR ERVL 1 547 -7 24 32 0 0 chr6 103385859 103385890 -85893664 + AT_rich Low_complexity Low_complexity 1 31 0 2384 99 0 0 chr6 103386115 103386427 -85893127 - AluSx SINE Alu 0 312 1 529 287 146 73 chr6 103386469 103387105 -85892449 - L2 LINE L2 -673 2641 1927 2500 62 0 0 chr6 103387105 103387411 -85892143 + AluY SINE Alu 1 306 -5 529 287 146 73 chr6 103387411 103387614 -85891940 - L2 LINE L2 -1387 1927 1740 384 308 107 34 chr6 103387633 103387987 -85891567 - L2 LINE L2 -2235 1079 700 191 308 315 0 chr6 103388210 103388340 -85891214 + MIR SINE MIR 18 188 -74 745 258 18 23 chr6 103388736 103389074 -85890480 + MER115 DNA AcHobo 300 693 0 629 160 0 10 chr6 103391417 103391567 -85887987 + AluJ SINE Alu 88 284 -28 1127 206 99 0 chr6 103391911 103392154 -85887400 + Tigger7 DNA MER2_type 1 267 -466 519 168 42 0 chr6 103392152 103392247 -85887307 + Tigger7 DNA MER2_type 2389 2487 0 * 334 347 25 37 chr6 103394130 103394372 -85885182 + LTR16C LTR ERVL 1 239 -252 320 239 34 120 chr6 103394925 103395042 -85884512 - L2 LINE L2 -8 3305 3199 936 320 70 24 chr6 103395920 103396376 -85883178 + MLT1K LTR MaLR 44 520 -68 264 266 149 21 chr6 103396661 103396755 -85882799 - L2 LINE L2 -18 3295 3190 667 312 82 59 chr6 103396825 103397401 -85882153 + L2 LINE L2 2722 3307 -6 534 220 25 6 chr6 103398423 103398582 -85880972 - L1ME2 LINE L1 -21 6143 5982 2453 67 3 13 chr6 103399215 103399529 -85880025 - AluY SINE Alu 0 311 1 705 281 61 59 chr6 103399771 103400277 -85879277 + Tigger8 DNA MER2_type 63 569 -97 361 298 56 25 chr6 103400893 103401054 -85878500 + L1MC4a LINE L1 5730 5895 -1913 195 69 0 0 chr6 103401067 103401096 -85878458 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr6 103402072 103402093 -85877461 + AT_rich Low_complexity Low_complexity 1 21 0 4056 133 58 13 chr6 103402318 103403146 -85876408 - MER4-int LTR ERV1 -1212 5386 4518 1995 71 4 64 chr6 103403146 103403427 -85876127 + AluY SINE Alu 39 302 -9 4056 133 58 13 chr6 103403427 103403438 -85876116 - MER4-int LTR ERV1 -2080 4518 4509 650 144 10 0 chr6 103403463 103403567 -85875987 + AluJb SINE Alu 1 105 -207 236 296 165 34 chr6 103403752 103403928 -85875626 + L2 LINE L2 3073 3271 -42 291 229 84 36 chr6 103404147 103404230 -85875324 - MIR SINE MIR -72 190 104 189 300 0 89 chr6 103404301 103404391 -85875163 - MIR SINE MIR -159 103 22 1967 167 5 8 chr6 103404569 103404941 -85874613 + L1MB3 LINE L1 5804 6174 -9 474 311 0 0 chr6 103405102 103405224 -85874330 - MIR SINE MIR -4 258 137 1752 190 6 23 chr6 103405262 103405442 -85874112 + MER2 DNA MER2_type 4 177 -168 2253 145 84 5 chr6 103405442 103405835 -85873719 - MSTB LTR MaLR 0 426 3 1752 190 6 23 chr6 103405835 103406002 -85873552 + MER2 DNA MER2_type 177 345 0 2225 205 26 16 chr6 103408286 103408818 -85870736 - LTR27 LTR ERV1 -137 499 7 608 321 78 48 chr6 103409462 103409940 -85869614 - L2 LINE L2 0 3272 2781 383 358 77 44 chr6 103409955 103410641 -85868913 - L2 LINE L2 -9 3263 2559 2626 148 17 8 chr6 103410787 103411266 -85868288 + L1MB3 LINE L1 5691 6173 -10 23 0 0 0 chr6 103411513 103411536 -85868018 + AT_rich Low_complexity Low_complexity 1 23 0 880 226 0 5 chr6 103411546 103411732 -85867822 + MER58A DNA MER1_type 40 224 0 499 270 106 10 chr6 103411740 103412033 -85867521 + L1MC4 LINE L1 7722 8042 0 261 274 38 28 chr6 103412732 103412838 -85866716 + L1P4 LINE L1 5751 5857 -309 640 327 36 5 chr6 103413340 103413560 -85865994 - MIR SINE MIR -19 243 17 451 231 30 45 chr6 103413748 103413882 -85865672 - L2 LINE L2 0 3313 3182 427 231 119 33 chr6 103413901 103414144 -85865410 + HAL1 LINE L1 2244 2507 0 662 221 8 0 chr6 103414327 103414458 -85865096 + FLAM_C SINE Alu 1 132 -11 2192 99 7 7 chr6 103414956 103415249 -85864305 - AluSg SINE Alu -16 294 2 1538 170 58 11 chr6 103415359 103415635 -85863919 - AluJb SINE Alu -6 306 18 22 0 0 0 chr6 103415886 103415908 -85863646 + AT_rich Low_complexity Low_complexity 1 22 0 1488 286 121 40 chr6 103416463 103417289 -85862265 - L2 LINE L2 -708 2606 1714 295 179 77 26 chr6 103417354 103417432 -85862122 - L1MC5 LINE L1 -74 7887 7806 736 204 32 11 chr6 103417451 103417637 -85861917 - L1ME1 LINE L1 -1 6165 5976 364 323 0 0 chr6 103417650 103417749 -85861805 + L2 LINE L2 2261 2359 -955 3423 203 18 46 chr6 103417752 103418761 -85860793 + L1ME1 LINE L1 5190 6325 -9 337 294 55 20 chr6 103418765 103418911 -85860643 + L2 LINE L2 2349 2499 -815 2095 94 4 4 chr6 103419891 103420168 -85859386 + AluSp SINE Alu 24 300 -13 324 298 14 14 chr6 103421371 103421512 -85858042 + L1MEd LINE L1 45 185 -5934 1675 330 63 32 chr6 103422091 103423491 -85856063 + HERV16 LTR ERVL 149 1670 -3326 1678 110 7 75 chr6 103423491 103423772 -85855782 + AluSx SINE Alu 40 301 -11 1675 330 63 32 chr6 103423772 103424033 -85855521 + HERV16 LTR ERVL 1670 1922 -3074 1308 301 75 34 chr6 103424029 103424697 -85854857 + HERV16 LTR ERVL 2023 2717 -3047 * 649 310 84 4 chr6 103424706 103424980 -85854574 + HERV16 LTR ERVL 3039 3334 -2320 295 393 22 0 chr6 103425079 103425308 -85854246 + HERV16 LTR ERVL 3626 3859 -1795 292 265 136 9 chr6 103425951 103426172 -85853382 + L1ME LINE L1 5340 5603 -581 277 286 56 34 chr6 103426194 103426428 -85853126 + L1ME LINE L1 5655 5893 -271 1047 155 0 12 chr6 103426625 103426793 -85852761 + FRAM SINE Alu 4 169 -7 492 162 0 0 chr6 103427398 103427472 -85852082 - AluJo SINE Alu -116 196 123 21 57 0 0 chr6 103427472 103427507 -85852047 + AT_rich Low_complexity Low_complexity 1 35 0 261 303 119 0 chr6 103427707 103427816 -85851738 - MIR SINE MIR -113 149 28 672 80 0 0 chr6 103428095 103428195 -85851359 + (TC)n Simple_repeat Simple_repeat 1 100 0 285 118 0 0 chr6 103428196 103428247 -85851307 + (CA)n Simple_repeat Simple_repeat 1 51 0 270 189 0 42 chr6 103429599 103429694 -85849860 + CT-rich Low_complexity Low_complexity 4 94 0 732 156 8 33 chr6 103430372 103430494 -85849060 + FLAM_A SINE Alu 1 119 -14 207 0 0 0 chr6 103430495 103430518 -85849036 + (TA)n Simple_repeat Simple_repeat 2 24 0 263 337 45 65 chr6 103430993 103431192 -85848362 + L2 LINE L2 2905 3099 -173 2289 102 16 0 chr6 103431352 103431657 -85847897 - AluSg SINE Alu 0 310 1 878 265 196 37 chr6 103431739 103432225 -85847329 + MLT1K LTR MaLR 20 582 -6 507 330 123 18 chr6 103432227 103432503 -85847051 + L2 LINE L2 2017 2321 -993 681 304 101 41 chr6 103432581 103433114 -85846440 + L2 LINE L2 2704 3267 -5 2034 134 3 0 chr6 103433543 103433852 -85845702 + AluSx SINE Alu 1 310 0 30 0 0 0 chr6 103434091 103434121 -85845433 + AT_rich Low_complexity Low_complexity 1 30 0 361 190 219 44 chr6 103434175 103434312 -85845242 + MIR SINE MIR 102 262 0 2371 187 22 30 chr6 103434347 103434856 -85844698 + LTR22 LTR ERVK 1 505 -4 787 277 113 15 chr6 103434859 103435256 -85844298 - L2 LINE L2 -43 3270 2835 353 177 13 63 chr6 103435532 103435611 -85843943 + MLT1L LTR MaLR 3 77 -538 313 278 56 24 chr6 103435849 103436110 -85843444 + MER110A LTR ERV1 158 468 0 367 147 51 19 chr6 103436193 103436350 -85843204 + (TA)n Simple_repeat Simple_repeat 1 162 0 1156 233 69 85 chr6 103436536 103436561 -85842993 - MER34 LTR ERV1 -69 473 449 1625 174 6 64 chr6 103436561 103436710 -85842844 + AluJb SINE Alu 1 122 -190 2121 112 3 0 chr6 103436710 103436996 -85842558 + AluSx SINE Alu 11 297 -15 1625 174 6 64 chr6 103436996 103437173 -85842381 + AluJb SINE Alu 122 308 -4 1156 233 69 85 chr6 103437173 103437628 -85841926 - MER34 LTR ERV1 -93 449 1 421 311 61 0 chr6 103438210 103438374 -85841180 - MIR SINE MIR -49 213 40 352 330 8 0 chr6 103439196 103439314 -85840240 + L2 LINE L2 3194 3312 -1 696 198 6 11 chr6 103439325 103439502 -85840052 + GA-rich Low_complexity Low_complexity 4 179 0 998 303 70 11 chr6 103439990 103440347 -85839207 - MLT1I LTR MaLR -2 407 30 2295 95 0 0 chr6 103440763 103441058 -85838496 + AluSc SINE Alu 1 295 -14 275 254 16 0 chr6 103442486 103442549 -85837005 - L2 LINE L2 -3 3269 3206 303 130 0 0 chr6 103443404 103443458 -85836096 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 293 287 79 0 chr6 103443458 103443559 -85835995 - MIR3 SINE MIR -53 155 47 243 269 102 46 chr6 103444541 103444649 -85834905 - L2 LINE L2 0 3313 3200 259 299 23 0 chr6 103446464 103446551 -85833003 - L2 LINE L2 -594 2720 2632 229 364 10 38 chr6 103446636 103446845 -85832709 - L2 LINE L2 -1135 2179 1977 324 271 143 69 chr6 103446845 103447222 -85832332 + L1ME4a LINE L1 5485 5889 -232 1280 150 5 0 chr6 103447491 103447698 -85831856 + L1PA16 LINE L1 5955 6162 -4 475 241 123 59 chr6 103449068 103449255 -85830299 - MIR SINE MIR -11 251 53 408 111 0 0 chr6 103449285 103449348 -85830206 + (CTA)n Simple_repeat Simple_repeat 1 63 0 2138 111 31 0 chr6 103449484 103449773 -85829781 + AluSx SINE Alu 1 298 -14 351 0 0 0 chr6 103450001 103450040 -85829514 + (TA)n Simple_repeat Simple_repeat 1 39 0 204 242 0 15 chr6 103450069 103450135 -85829419 + (TA)n Simple_repeat Simple_repeat 1 65 0 2279 95 17 0 chr6 103450654 103450949 -85828605 + AluSg SINE Alu 1 300 -10 773 263 61 20 chr6 103451148 103451395 -85828159 + MIR SINE MIR 3 259 -3 66 25 0 0 chr6 103451758 103451838 -85827716 + AT_rich Low_complexity Low_complexity 1 80 0 251 235 24 24 chr6 103456965 103457050 -85822504 + GA-rich Low_complexity Low_complexity 1 85 0 953 218 111 4 chr6 103457167 103457401 -85822153 - MIR SINE MIR -1 261 3 510 313 61 12 chr6 103457407 103457653 -85821901 - MARNA DNA Mariner -50 536 279 33 56 0 0 chr6 103457659 103457713 -85821841 + AT_rich Low_complexity Low_complexity 1 54 0 644 226 92 51 chr6 103458777 103458972 -85820582 - MIR SINE MIR -52 210 8 297 0 0 0 chr6 103459023 103459056 -85820498 + (A)n Simple_repeat Simple_repeat 1 33 0 193 333 60 0 chr6 103459498 103459582 -85819972 + MIR SINE MIR 77 165 -97 417 221 16 94 chr6 103459848 103459975 -85819579 + MIR SINE MIR 28 144 -118 435 270 0 0 chr6 103460265 103460354 -85819200 - MIR3 SINE MIR -31 177 89 304 238 52 22 chr6 103461084 103461202 -85818352 - MER5A DNA MER1_type -58 120 9 375 226 0 0 chr6 103461625 103461687 -85817867 - MER2 DNA MER2_type -4 341 280 242 119 0 0 chr6 103461731 103461773 -85817781 - MER2 DNA MER2_type -150 195 154 1230 146 5 0 chr6 103461814 103461999 -85817555 - MER2 DNA MER2_type -159 186 1 268 330 19 29 chr6 103462053 103462156 -85817398 + L2 LINE L2 3169 3270 -2 3373 198 71 12 chr6 103462826 103463563 -85815991 - L1ME1 LINE L1 -44 6122 5343 423 0 0 0 chr6 103463789 103463836 -85815718 + (TG)n Simple_repeat Simple_repeat 2 48 0 444 354 14 0 chr6 103463983 103464130 -85815424 + MIR SINE MIR 3 151 -111 2037 136 13 3 chr6 103464130 103464438 -85815116 + AluSx SINE Alu 1 311 -1 189 74 0 0 chr6 103464443 103464470 -85815084 + (CAAG)n Simple_repeat Simple_repeat 2 28 0 652 177 9 9 chr6 103464524 103464741 -85814813 + GA-rich Low_complexity Low_complexity 1 217 0 203 138 0 0 chr6 103464742 103464771 -85814783 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 373 266 53 9 chr6 103464772 103464885 -85814669 + MIR SINE MIR 145 262 0 39 80 0 0 chr6 103465281 103465369 -85814185 + AT_rich Low_complexity Low_complexity 1 88 0 367 274 133 0 chr6 103466868 103466981 -85812573 + MIR SINE MIR 2 129 -133 535 236 69 0 chr6 103466982 103467126 -85812428 - LTR37B LTR ERV1 -314 154 1 1735 226 78 13 chr6 103467147 103467657 -85811897 + L1MDa LINE L1 2479 3021 -3519 761 241 25 0 chr6 103470988 103471150 -85808404 + MIR3 SINE MIR 37 202 -6 2864 152 13 21 chr6 103472334 103472801 -85806753 + MLT1C LTR MaLR 5 467 0 302 261 43 11 chr6 103474261 103474353 -85805201 + MIR SINE MIR 95 189 -73 2722 192 74 11 chr6 103474434 103475080 -85804474 + L1MA9 LINE L1 4660 5346 -800 256 267 47 0 chr6 103475081 103475167 -85804387 + L1MC4 LINE L1 6613 6702 -1340 276 114 14 29 chr6 103475173 103475243 -85804311 + (TA)n Simple_repeat Simple_repeat 2 70 0 403 279 13 0 chr6 103475274 103475428 -85804126 + (TA)n Simple_repeat Simple_repeat 1 156 0 400 163 11 11 chr6 103475534 103475626 -85803928 + (TA)n Simple_repeat Simple_repeat 1 92 0 2241 185 16 36 chr6 103475626 103475639 -85803915 + L1MA9 LINE L1 5782 5794 -518 330 26 0 0 chr6 103475639 103475678 -85803876 + (GA)n Simple_repeat Simple_repeat 2 40 0 2241 185 16 36 chr6 103475678 103476167 -85803387 + L1MA9 LINE L1 5794 6274 -38 663 259 5 30 chr6 103476200 103476397 -85803157 + MIR SINE MIR 71 262 0 200 301 0 41 chr6 103477559 103477632 -85801922 - L2 LINE L2 -4 3268 3199 711 298 28 5 chr6 103478932 103479150 -85800404 + MIR SINE MIR 19 241 -21 2283 100 0 7 chr6 103480093 103480402 -85799152 - AluSg1 SINE Alu -2 307 1 205 253 67 27 chr6 103481615 103481690 -85797864 - MIR SINE MIR -96 166 89 279 0 0 0 chr6 103482515 103482546 -85797008 + (CA)n Simple_repeat Simple_repeat 1 31 0 990 264 130 28 chr6 103482782 103483328 -85796226 - L1ME4a LINE L1 -5 6116 5515 1569 206 69 58 chr6 103483444 103483848 -85795706 - L1MB8 LINE L1 -1 6177 5779 216 0 0 0 chr6 103483848 103483872 -85795682 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2238 95 0 0 chr6 103483872 103484155 -85795399 - AluSq SINE Alu -30 283 1 1569 206 69 58 chr6 103484155 103484303 -85795251 - L1MB8 LINE L1 -398 5780 5618 533 312 67 41 chr6 103485186 103485650 -85793904 - L1 LINE L1 -3403 2743 2268 327 337 42 30 chr6 103486465 103486631 -85792923 + L3b LINE CR1 1153 1320 -263 1890 159 0 26 chr6 103486709 103487017 -85792537 + AluJo SINE Alu 3 302 -10 324 235 76 24 chr6 103487133 103487247 -85792307 + MIR SINE MIR 20 151 -63 218 220 0 20 chr6 103487381 103487431 -85792123 - L2 LINE L2 -5 3267 3219 547 208 130 12 chr6 103487576 103487799 -85791755 + MLT1K LTR MaLR 295 585 -3 228 260 82 0 chr6 103487905 103487978 -85791576 - MIR SINE MIR -13 249 171 3331 117 48 48 chr6 103489007 103489249 -85790305 + L1MB4 LINE L1 5590 5831 -349 1856 144 42 23 chr6 103489249 103489555 -85789999 + AluJb SINE Alu 1 312 0 3331 117 48 48 chr6 103489555 103489902 -85789652 + L1MB4 LINE L1 5830 6179 -1 2140 127 92 82 chr6 103491304 103491728 -85787826 - MSTA LTR MaLR 0 428 1 747 297 127 32 chr6 103491752 103492339 -85787215 - L2 LINE L2 0 3313 2567 862 168 14 136 chr6 103492339 103492452 -85787102 + MER5A DNA MER1_type 2 78 -111 1475 179 50 21 chr6 103492452 103492732 -85786822 + AluJb SINE Alu 1 288 -24 862 168 14 136 chr6 103492732 103492832 -85786722 + MER5A DNA MER1_type 78 189 0 747 297 127 32 chr6 103492832 103492929 -85786625 - L2 LINE L2 -746 2567 2481 1501 210 20 7 chr6 103493214 103493514 -85786040 - AluJo SINE Alu -8 304 1 246 263 35 0 chr6 103493543 103493600 -85785954 + LTR67 LTR ERVL 134 192 -365 182 378 81 37 chr6 103494080 103494326 -85785228 + L2 LINE L2 2655 2911 -403 1143 251 114 27 chr6 103496341 103496744 -85782810 - LTR16A LTR ERVL -1 449 12 474 241 230 16 chr6 103498042 103498229 -85781325 + MIR SINE MIR 5 231 -31 2540 68 3 0 chr6 103499358 103499666 -85779888 + AluY SINE Alu 1 309 -2 396 40 0 0 chr6 103499692 103499742 -85779812 + (TC)n Simple_repeat Simple_repeat 1 50 0 2214 131 0 0 chr6 103499822 103500134 -85779420 - AluSx SINE Alu 0 312 1 197 339 0 0 chr6 103501262 103501321 -85778233 - L2 LINE L2 -1 3312 3254 * 288 241 63 0 chr6 103501291 103501370 -85778184 - MIR SINE MIR -24 238 155 2111 188 103 41 chr6 103501683 103501727 -85777827 - MLT2B2 LTR ERVL 0 515 475 2349 153 50 29 chr6 103501727 103502144 -85777410 - MSTB LTR MaLR 0 426 1 2111 188 103 41 chr6 103502144 103502584 -85776970 - MLT2B2 LTR ERVL -40 475 1 8686 129 10 17 chr6 103502586 103503907 -85775647 - ERVL-B2 LTR ERVL -9 5755 4444 3301 211 39 28 chr6 103503901 103504468 -85775086 - ERVL-B1 LTR ERVL -5034 730 152 * 2233 125 3 0 chr6 103504468 103504771 -85774783 - AluSx SINE Alu -8 304 1 3301 211 39 28 chr6 103504771 103504925 -85774629 - ERVL-B1 LTR ERVL -5612 152 1 1649 203 28 38 chr6 103504925 103505361 -85774193 - MLT2B1 LTR ERVL 0 414 1 236 311 11 11 chr6 103506493 103506583 -85772971 + L2 LINE L2 2224 2313 -1001 375 296 127 0 chr6 103506791 103506933 -85772621 + MIR SINE MIR 75 234 -28 241 303 40 20 chr6 103507103 103507202 -85772352 - MER5B DNA MER1_type -13 165 65 * 328 249 12 144 chr6 103507116 103507216 -85772338 + MER5A DNA MER1_type 39 151 -38 2248 114 74 17 chr6 103507216 103507567 -85771987 + THE1C LTR MaLR 5 375 0 10892 105 41 39 chr6 103507567 103509145 -85770409 + THE1C-int LTR MaLR 1 1580 0 2567 131 5 13 chr6 103509148 103509523 -85770031 + THE1C LTR MaLR 4 375 0 328 249 12 144 chr6 103509523 103509590 -85769964 + MER5A DNA MER1_type 152 188 -1 327 242 0 121 chr6 103509605 103509665 -85769889 - MIR SINE MIR -57 151 112 1742 155 16 36 chr6 103509665 103509974 -85769580 + AluJb SINE Alu 1 303 -9 327 242 0 121 chr6 103509974 103510037 -85769517 - MIR SINE MIR -96 112 43 243 275 0 11 chr6 103511606 103511697 -85767857 - L1MC4 LINE L1 -1339 6703 6614 275 157 45 0 chr6 103511699 103511788 -85767766 + (TA)n Simple_repeat Simple_repeat 2 94 0 308 239 11 0 chr6 103511792 103511880 -85767674 - L1MC4 LINE L1 -1337 6705 6617 1942 143 4 0 chr6 103511893 103512173 -85767381 - AluSx SINE Alu -31 281 1 1368 108 0 10 chr6 103513483 103513677 -85765877 + MER115 DNA AcHobo 501 692 -1 1447 228 50 70 chr6 103514960 103515102 -85764452 + L1MC4a LINE L1 5197 5340 -1165 2186 85 0 31 chr6 103515102 103515429 -85764125 + AluSq SINE Alu 1 318 0 1447 228 50 70 chr6 103515429 103515789 -85763765 + L1MC4a LINE L1 5340 5682 -823 1778 178 0 19 chr6 103515789 103516103 -85763451 + AluJb SINE Alu 5 312 0 1447 228 50 70 chr6 103516103 103516178 -85763376 + L1MC4a LINE L1 5682 5757 -748 1546 209 81 100 chr6 103516178 103516639 -85762915 + MLT2B1 LTR ERVL 1 452 -68 1262 207 0 0 chr6 103516639 103516871 -85762683 - MER46A DNA MER2_type 0 236 5 1546 209 81 100 chr6 103516871 103516939 -85762615 + MLT2B1 LTR ERVL 452 520 0 397 259 49 73 chr6 103516939 103516987 -85762567 + L1MC4a LINE L1 5753 5801 -2007 12925 137 44 59 chr6 103516987 103518087 -85761467 + Tigger1 DNA MER2_type 2 1118 -1300 2378 93 7 0 chr6 103518087 103518389 -85761165 + AluSc SINE Alu 1 304 -5 12925 137 44 59 chr6 103518389 103519740 -85759814 + Tigger1 DNA MER2_type 1118 2415 -3 397 259 49 73 chr6 103519740 103519938 -85759616 + L1MC4a LINE L1 5801 5993 -1815 22 35 0 0 chr6 103520056 103520085 -85759469 + AT_rich Low_complexity Low_complexity 1 29 0 2061 135 0 20 chr6 103520086 103520389 -85759165 + AluSx SINE Alu 1 297 -15 214 263 38 0 chr6 103520427 103520507 -85759047 + L2 LINE L2 3119 3201 -112 992 234 14 14 chr6 103520508 103520726 -85758828 + MER58A DNA MER1_type 7 224 0 276 262 155 10 chr6 103520734 103520837 -85758717 + L2 LINE L2 3173 3290 -23 1415 273 48 16 chr6 103520843 103521279 -85758275 - LTR16A LTR ERVL 0 450 1 460 252 55 0 chr6 103521412 103521539 -85758015 - LTR16C LTR ERVL 0 491 358 189 286 79 0 chr6 103521566 103521629 -85757925 + MER5C DNA MER1_type 3 70 -254 262 256 35 23 chr6 103522769 103522855 -85756699 - MER5B DNA MER1_type 0 178 92 1900 158 3 3 chr6 103523706 103523998 -85755556 + AluJo SINE Alu 7 298 -14 863 242 0 0 chr6 103524131 103524288 -85755266 + FRAM SINE Alu 1 157 -9 1664 108 173 11 chr6 103524332 103524592 -85754962 - AluSx SINE Alu 0 302 1 504 227 59 0 chr6 103524593 103524712 -85754842 + L1ME3A LINE L1 6040 6165 -5 1626 51 5 10 chr6 103525014 103525211 -85754343 + L1PA7 LINE L1 5959 6154 0 2151 139 0 0 chr6 103525222 103525532 -85754022 + AluSx SINE Alu 1 310 -2 544 244 107 6 chr6 103525654 103525822 -85753732 + MIR SINE MIR 69 253 -9 231 339 99 25 chr6 103527036 103527157 -85752397 + MIR SINE MIR 22 151 -111 802 325 86 27 chr6 103527649 103528138 -85751416 - L2 LINE L2 -366 2948 2431 265 236 40 81 chr6 103528144 103528292 -85751262 + L2 LINE L2 2165 2306 -1008 368 295 35 70 chr6 103528710 103528968 -85750586 + MLT1K LTR MaLR 168 416 -172 209 133 0 44 chr6 103529497 103529542 -85750012 + (CA)n Simple_repeat Simple_repeat 2 44 0 430 308 223 0 chr6 103532752 103532895 -85746659 + MIR SINE MIR 2 112 -150 672 218 0 0 chr6 103532895 103533005 -85746549 + MER81 DNA DNA 3 112 -2 430 308 223 0 chr6 103533005 103533072 -85746482 + MIR SINE MIR 112 259 -3 379 281 138 0 chr6 103533740 103533900 -85745654 - MIR SINE MIR 0 262 81 223 213 213 12 chr6 103533934 103534014 -85745540 + MIR SINE MIR 159 254 -8 1674 72 0 5 chr6 103534028 103534236 -85745318 - L1PA8 LINE L1 -8 6164 5958 374 336 7 15 chr6 103534371 103534508 -85745046 - L2 LINE L2 -9 3304 3169 3913 228 39 7 chr6 103534536 103535490 -85744064 + L1MB2 LINE L1 4345 5328 -818 1441 184 21 49 chr6 103535490 103535778 -85743776 + AluJo SINE Alu 1 280 -32 447 19 0 0 chr6 103535782 103535834 -85743720 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 1029 134 0 79 chr6 103535836 103536052 -85743502 + L1MB2 LINE L1 5328 5526 -657 993 172 182 8 chr6 103536046 103536287 -85743267 + L1MB2 LINE L1 5929 6170 -1 * 210 294 176 20 chr6 103536350 103536452 -85743102 - L2 LINE L2 -234 3038 2921 1267 242 41 74 chr6 103536703 103537177 -85742377 + L1MC4 LINE L1 7595 7784 -1 195 129 0 0 chr6 103538355 103538386 -85741168 + (A)n Simple_repeat Simple_repeat 1 31 0 26 0 0 0 chr6 103538397 103538423 -85741131 + AT_rich Low_complexity Low_complexity 1 26 0 361 312 135 35 chr6 103539876 103540158 -85739396 + L2 LINE L2 2928 3237 -35 238 324 14 0 chr6 103540492 103540563 -85738991 + L2 LINE L2 2991 3062 -251 21 57 0 0 chr6 103540676 103540711 -85738843 + AT_rich Low_complexity Low_complexity 1 35 0 904 150 0 0 chr6 103540932 103541059 -85738495 - AluJb SINE Alu -185 127 1 333 244 9 35 chr6 103541062 103541177 -85738377 - L1ME LINE L1 -295 5826 5715 32 26 0 0 chr6 103541238 103541277 -85738277 + AT_rich Low_complexity Low_complexity 1 39 0 444 292 75 13 chr6 103541815 103542041 -85737513 + L2 LINE L2 1284 1523 -1791 1519 297 129 21 chr6 103542060 103542690 -85736864 + L2 LINE L2 2069 2766 -548 196 50 0 50 chr6 103545309 103545349 -85734205 + (CCCCCG)n Simple_repeat Simple_repeat 1 38 0 291 54 0 0 chr6 103545565 103545602 -85733952 + (CAG)n Simple_repeat Simple_repeat 1 37 0 292 200 32 42 chr6 103545644 103545739 -85733815 + C-rich Low_complexity Low_complexity 4 97 0 33 43 0 0 chr6 103545910 103545957 -85733597 + GC_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr6 103545963 103545995 -85733559 + GC_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr6 103546023 103546062 -85733492 + GC_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 103546111 103546132 -85733422 + GC_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr6 103546305 103546340 -85733214 + GC_rich Low_complexity Low_complexity 1 35 0 324 0 0 0 chr6 103546699 103546735 -85732819 + (CA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr6 103547281 103547303 -85732251 + GC_rich Low_complexity Low_complexity 1 22 0 925 183 5 73 chr6 103549201 103549392 -85730162 + MER45A DNA AcHobo 1 178 0 440 225 8 25 chr6 103549469 103549589 -85729965 - Charlie8 DNA MER1_type -2223 194 77 340 333 14 21 chr6 103550032 103550176 -85729378 - MIR SINE MIR 0 262 120 200 284 0 0 chr6 103550819 103550886 -85728668 + T-rich Low_complexity Low_complexity 1 67 0 385 360 19 70 chr6 103551914 103552172 -85727382 - L2 LINE L2 0 3272 3028 925 144 86 54 chr6 103552630 103552852 -85726702 - MER30 DNA MER1_type 0 230 2 291 284 347 0 chr6 103552957 103553147 -85726407 - MIR SINE MIR -1 261 6 1270 118 0 5 chr6 103558435 103558622 -85720932 + L1PA7 LINE L1 4459 4644 -1502 3483 14 0 0 chr6 103558622 103558990 -85720564 + L1PA3 LINE L1 5786 6155 0 7108 56 24 15 chr6 103559088 103560595 -85718959 + L1PA7 LINE L1 4630 6153 -1 349 353 77 19 chr6 103560684 103560840 -85718714 - MIR3 SINE MIR -25 183 19 290 242 16 0 chr6 103562916 103562978 -85716576 - L2 LINE L2 -5 3308 3246 411 223 209 20 chr6 103564007 103564303 -85715251 + L1ME4a LINE L1 5764 6115 -6 303 239 100 15 chr6 103565735 103565865 -85713689 - MIR SINE MIR -63 145 5 24 100 0 0 chr6 103565882 103565962 -85713592 + GC_rich Low_complexity Low_complexity 1 80 0 244 310 124 23 chr6 103566867 103566996 -85712558 - MIR3 SINE MIR -21 187 46 189 0 0 0 chr6 103568581 103568602 -85710952 + (TA)n Simple_repeat Simple_repeat 2 22 0 1193 226 91 82 chr6 103568719 103569266 -85710288 - MER39 LTR ERV1 -20 687 4 227 343 0 0 chr6 103569589 103569656 -85709898 + L2 LINE L2 3204 3270 -2 470 350 86 13 chr6 103572231 103572534 -85707020 + L2 LINE L2 2518 2842 -472 25 0 0 0 chr6 103575584 103575609 -85703945 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr6 103575657 103575678 -85703876 + AT_rich Low_complexity Low_complexity 1 21 0 511 194 0 0 chr6 103575809 103575902 -85703652 + MER94 DNA DNA 1 93 -41 944 286 24 0 chr6 103576045 103576300 -85703254 - MIR SINE MIR 0 262 2 23804 127 12 78 chr6 103577601 103582136 -85697418 + L1P LINE L1 12 4246 -1900 22 0 0 0 chr6 103582310 103582332 -85697222 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr6 103582555 103582586 -85696968 + AT_rich Low_complexity Low_complexity 1 31 0 24 85 0 0 chr6 103582605 103582664 -85696890 + AT_rich Low_complexity Low_complexity 1 59 0 2348 103 0 0 chr6 103584160 103584471 -85695083 - AluSx SINE Alu -1 311 1 2182 249 110 45 chr6 103584486 103585606 -85693948 - L1MC4a LINE L1 -747 5399 4765 1388 198 18 18 chr6 103585795 103586068 -85693486 - AluJo SINE Alu -28 284 12 316 282 49 68 chr6 103586086 103586249 -85693305 - HAL1b LINE L1 -1100 248 89 375 300 68 78 chr6 103587959 103588456 -85691098 + L2 LINE L2 1444 1935 -1379 438 267 110 11 chr6 103588797 103588988 -85690566 + MER102b DNA MER1_type 101 310 -31 1223 198 8 25 chr6 103589941 103590184 -85689370 - AluJo SINE Alu -73 239 1 199 357 112 10 chr6 103590348 103590446 -85689108 - L2 LINE L2 -21 3292 3185 340 359 88 30 chr6 103590923 103591252 -85688302 - L2 LINE L2 -728 2586 2239 311 349 47 47 chr6 103591542 103591691 -85687863 + MIR3 SINE MIR 33 181 -27 252 350 85 20 chr6 103593586 103593786 -85685768 - MIR SINE MIR -1 261 49 330 338 50 12 chr6 103594058 103594218 -85685336 - L3b LINE CR1 -103 1480 1315 2113 124 7 7 chr6 103594880 103595187 -85684367 - AluSq SINE Alu -6 307 1 1570 190 71 3 chr6 103595886 103596250 -85683304 + MLT1B LTR MaLR 2 390 0 2455 72 0 3 chr6 103596481 103596786 -85682768 + AluY SINE Alu 1 304 -7 25 51 0 0 chr6 103597093 103597132 -85682422 + AT_rich Low_complexity Low_complexity 1 39 0 900 193 15 63 chr6 103597303 103597572 -85681982 - MLT2E LTR ERVL 0 628 373 541 188 160 35 chr6 103597575 103597719 -85681835 - MLT2E LTR ERVL -466 162 1 1870 129 11 35 chr6 103598033 103598359 -85681195 + AluSx SINE Alu 3 321 0 211 205 0 0 chr6 103598816 103598855 -85680699 + CT-rich Low_complexity Low_complexity 2 40 0 22 0 0 0 chr6 103600081 103600103 -85679451 + AT_rich Low_complexity Low_complexity 1 22 0 475 229 57 51 chr6 103600292 103600467 -85679087 + MIR SINE MIR 1 176 -86 279 0 0 0 chr6 103601246 103601277 -85678277 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2244 84 3 3 chr6 103601280 103601567 -85677987 - AluSp SINE Alu -26 287 1 241 258 0 45 chr6 103603076 103603165 -85676389 + T-rich Low_complexity Low_complexity 4 88 0 307 322 127 10 chr6 103603847 103604052 -85675502 + L2 LINE L2 2749 2977 -337 915 239 0 0 chr6 103604468 103604656 -85674898 + MER58A DNA MER1_type 1 188 -36 305 272 68 48 chr6 103604677 103604782 -85674772 - MIR SINE MIR -62 146 42 263 331 154 22 chr6 103604839 103604975 -85674579 - L2 LINE L2 -226 3046 2893 1669 235 92 36 chr6 103605166 103605949 -85673605 - Charlie7 DNA MER1_type -72 2540 1714 609 269 92 12 chr6 103606000 103606249 -85673305 - Charlie7 DNA MER1_type -2075 537 269 474 238 48 7 chr6 103606256 103606403 -85673151 - Charlie7 DNA MER1_type -2457 155 3 4689 130 36 22 chr6 103607595 103608448 -85671106 + L1PA16 LINE L1 5284 6148 -18 246 128 0 0 chr6 103608754 103608793 -85670761 + 5S rRNA rRNA 1 39 -82 2097 163 14 6 chr6 103609721 103610083 -85669471 + MLT1A1 LTR MaLR 1 365 0 345 47 0 0 chr6 103610194 103610237 -85669317 + (TA)n Simple_repeat Simple_repeat 2 44 0 222 37 0 0 chr6 103610265 103610292 -85669262 + (TG)n Simple_repeat Simple_repeat 2 28 0 472 343 185 0 chr6 103610409 103610625 -85668929 + MIR SINE MIR 2 257 -5 2942 213 27 8 chr6 103610652 103611291 -85668263 + MER82 DNA MER2_type 2 652 -1 399 93 0 0 chr6 103611301 103611355 -85668199 + MSTD LTR MaLR 2 55 -341 1119 134 0 38 chr6 103611370 103611556 -85667998 - AluSg/x SINE Alu 0 312 134 1778 169 6 30 chr6 103611579 103611916 -85667638 + MSTD LTR MaLR 68 396 0 718 298 168 47 chr6 103611928 103612357 -85667197 - L3 LINE CR1 -96 1481 1001 289 243 29 64 chr6 103612401 103612636 -85666918 + MLT1J2 LTR MaLR 55 325 -125 23 0 0 0 chr6 103612682 103612705 -85666849 + AT_rich Low_complexity Low_complexity 1 23 0 521 326 61 25 chr6 103612752 103613031 -85666523 - L3 LINE CR1 -597 980 692 195 42 0 0 chr6 103613181 103613205 -85666349 + (TTC)n Simple_repeat Simple_repeat 2 25 0 381 270 20 113 chr6 103613493 103613697 -85665857 + MIR SINE MIR 13 197 -65 286 162 27 27 chr6 103613915 103613989 -85665565 + CT-rich Low_complexity Low_complexity 4 77 0 1794 139 4 4 chr6 103613992 103614444 -85665110 - AluSx SINE Alu 0 483 32 552 195 0 17 chr6 103614615 103614733 -85664821 - MER103 DNA DNA -49 117 2 294 321 226 18 chr6 103615472 103615640 -85663914 - MIR SINE MIR -37 225 23 300 141 26 64 chr6 103615890 103615968 -85663586 - MLT1A2 LTR MaLR -11 363 289 3518 51 5 5 chr6 103618521 103618969 -85660585 - LTR7 LTR ERV1 -2 448 1 2167 97 57 8 chr6 103618969 103619341 -85660213 - HERVH LTR ERV1 0 7713 7324 1303 129 18 5 chr6 103619341 103619558 -85659996 - HERVH LTR ERV1 -1894 5819 5600 3916 149 5 9 chr6 103619559 103620224 -85659330 - HERVH LTR ERV1 -2564 5149 4488 3203 110 6 2 chr6 103620226 103620726 -85658828 - HERVH LTR ERV1 -3720 3993 3492 928 113 7 0 chr6 103620716 103620866 -85658688 - HERVH LTR ERV1 -4423 3290 3140 * 15644 86 40 15 chr6 103620845 103623303 -85656251 - HERVH LTR ERV1 -4718 2995 476 3491 55 0 7 chr6 103623308 103623759 -85655795 - LTR7 LTR ERV1 -2 448 1 207 100 0 0 chr6 103626142 103626172 -85653382 + (TG)n Simple_repeat Simple_repeat 1 30 0 799 312 21 4 chr6 103627358 103627592 -85651962 + MIR SINE MIR 15 252 -10 195 382 10 20 chr6 103627616 103627718 -85651836 + MIR SINE MIR 36 136 -126 1401 127 120 11 chr6 103627929 103628212 -85651342 - MLT1B LTR MaLR -4 386 73 632 144 0 0 chr6 103628325 103628415 -85651139 + AluS SINE Alu 3 92 -221 303 240 49 104 chr6 103628531 103628547 -85651007 - MLT1J2 LTR MaLR -12 438 423 2365 138 6 0 chr6 103628547 103628909 -85650645 + THE1B LTR MaLR 1 364 0 303 240 49 104 chr6 103628909 103629075 -85650479 - MLT1J2 LTR MaLR -27 423 266 1896 182 112 6 chr6 103629106 103629526 -85650028 - MLT1C LTR MaLR -5 451 3 236 339 36 27 chr6 103629596 103629708 -85649846 + MIR SINE MIR 16 128 -80 219 261 29 0 chr6 103629763 103629832 -85649722 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 414 344 38 8 chr6 103629835 103629966 -85649588 - L2 LINE L2 -2 3270 3136 365 281 7 68 chr6 103629985 103630131 -85649423 - L3 LINE CR1 -286 1291 1155 222 137 0 59 chr6 103630453 103630487 -85649067 + (CAAAAA)n Simple_repeat Simple_repeat 6 38 -15 1536 210 3 13 chr6 103630487 103630792 -85648762 + AluJo SINE Alu 1 302 -10 222 137 0 59 chr6 103630792 103630808 -85648746 + (CAAAAA)n Simple_repeat Simple_repeat 38 53 0 305 322 58 56 chr6 103630846 103631031 -85648523 - MIR SINE MIR -70 192 1 222 227 106 45 chr6 103632914 103632980 -85646574 - MER5C DNA MER1_type -249 75 6 30 69 0 0 chr6 103633936 103633994 -85645560 + AT_rich Low_complexity Low_complexity 1 58 0 3444 182 47 3 chr6 103634551 103635238 -85644316 + L1MB3 LINE L1 5450 6166 -17 40 0 0 0 chr6 103635239 103635279 -85644275 + AT_rich Low_complexity Low_complexity 1 40 0 374 276 281 5 chr6 103635297 103635489 -85644065 + MIR SINE MIR 9 253 -9 21 0 0 0 chr6 103635532 103635553 -85644001 + AT_rich Low_complexity Low_complexity 1 21 0 244 340 10 19 chr6 103637880 103637983 -85641571 - MIR SINE MIR -115 147 46 312 311 210 0 chr6 103638326 103638445 -85641109 + MIR3 SINE MIR 31 174 -34 432 300 61 17 chr6 103638694 103638874 -85640680 + L2 LINE L2 2874 3061 -211 239 277 0 15 chr6 103638876 103638941 -85640613 - L2 LINE L2 -5 3308 3245 2143 93 14 0 chr6 103638980 103639260 -85640294 + AluSx SINE Alu 1 305 0 190 0 0 0 chr6 103639260 103639281 -85640273 + (TAA)n Simple_repeat Simple_repeat 2 180 0 1209 148 30 0 chr6 103639488 103639690 -85639864 - MER3 DNA MER1_type -1 208 1 1734 264 136 14 chr6 103639764 103640711 -85638843 - L2 LINE L2 0 3313 2242 834 173 11 16 chr6 103640991 103641176 -85638378 - MLT1D LTR MaLR -2 503 320 588 245 5 83 chr6 103641178 103641382 -85638172 - MLT1D LTR MaLR -296 209 22 183 100 0 0 chr6 103641695 103641725 -85637829 + (TG)n Simple_repeat Simple_repeat 1 30 0 426 236 41 162 chr6 103642097 103642130 -85637424 + MIR SINE MIR 2 37 -225 2108 134 3 10 chr6 103642130 103642436 -85637118 + AluSx SINE Alu 1 304 -8 426 236 41 162 chr6 103642436 103642673 -85636881 + MIR SINE MIR 37 239 -23 296 240 164 19 chr6 103642629 103642733 -85636821 - L2 LINE L2 -404 2910 2792 * 544 310 67 35 chr6 103642780 103643151 -85636403 - L2 LINE L2 -741 2573 2191 525 165 0 0 chr6 103643459 103643538 -85636016 - AluJb SINE Alu -194 118 40 457 218 84 56 chr6 103643747 103643926 -85635628 + LTR41 LTR ERVL 1 184 -589 559 236 3 123 chr6 103644169 103644462 -85635092 + LTR41 LTR ERVL 515 772 -1 391 286 76 12 chr6 103644462 103644633 -85634921 + L1MC4a LINE L1 744 925 -5194 807 163 11 56 chr6 103644648 103644826 -85634728 + AluJb SINE Alu 120 289 -23 274 230 242 6 chr6 103644827 103644992 -85634562 + L1MC4a LINE L1 933 1136 -4983 401 286 82 54 chr6 103645125 103645738 -85633816 + L1MC4a LINE L1 3781 4375 -1754 309 47 0 0 chr6 103645738 103645781 -85633773 - MADE1 DNA Mariner -37 43 1 401 286 82 54 chr6 103645781 103646378 -85633176 + L1MC4a LINE L1 4375 4501 -1628 2240 114 0 3 chr6 103646378 103646686 -85632868 - AluSx SINE Alu -5 307 1 401 286 82 54 chr6 103646686 103647532 -85632022 + L1MC4a LINE L1 4501 5321 -808 268 315 14 0 chr6 103648746 103648819 -85630735 - MIR3 SINE MIR 0 208 135 21 36 0 0 chr6 103649226 103649254 -85630300 + AT_rich Low_complexity Low_complexity 1 28 0 473 276 71 28 chr6 103649564 103649818 -85629736 - LTR16B LTR ERVL -26 438 174 268 243 14 0 chr6 103650180 103650254 -85629300 - Charlie2 DNA MER1_type -3 2859 2785 306 0 0 0 chr6 103652285 103652319 -85627235 + (TG)n Simple_repeat Simple_repeat 2 35 0 256 64 43 0 chr6 103652390 103652437 -85627117 + (TA)n Simple_repeat Simple_repeat 2 50 0 317 196 22 43 chr6 103652442 103652534 -85627020 - L1MC4 LINE L1 -1339 6703 6614 344 236 22 11 chr6 103652541 103652630 -85626924 - L1MC4 LINE L1 -1339 6703 6614 219 154 0 0 chr6 103652635 103652674 -85626880 + (TA)n Simple_repeat Simple_repeat 1 39 0 431 306 12 19 chr6 103653117 103653277 -85626277 + MIR3 SINE MIR 9 167 -41 500 304 12 67 chr6 103653878 103654131 -85625423 - MIR SINE MIR -12 250 12 234 0 0 0 chr6 103656985 103657011 -85622543 + (A)n Simple_repeat Simple_repeat 1 26 0 185 328 55 31 chr6 103658368 103658496 -85621058 + L3 LINE CR1 643 773 -804 24 0 0 0 chr6 103661442 103661466 -85618088 + AT_rich Low_complexity Low_complexity 1 24 0 447 255 157 37 chr6 103661757 103661973 -85617581 - MIR SINE MIR 0 262 21 463 222 89 22 chr6 103662568 103662703 -85616851 + MER117 DNA MER1_type 1 144 -53 472 196 108 29 chr6 103662840 103662942 -85616612 + MER81 DNA DNA 1 110 -4 496 230 44 22 chr6 103662946 103663081 -85616473 - L1MD2 LINE L1 0 6359 6222 234 0 0 0 chr6 103663137 103663163 -85616391 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 188 300 0 0 chr6 103665296 103665336 -85614218 - MIR SINE MIR -57 151 112 740 205 135 0 chr6 103665787 103665948 -85613606 + MER5A DNA MER1_type 4 189 0 813 241 42 42 chr6 103667542 103667804 -85611750 - MIR SINE MIR 0 262 1 30 0 0 0 chr6 103668603 103668633 -85610921 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr6 103669758 103669782 -85609772 + (T)n Simple_repeat Simple_repeat 1 24 0 188 157 71 129 chr6 103670594 103670664 -85608890 + L2 LINE L2 3240 3305 -8 460 279 97 18 chr6 103670823 103670988 -85608566 + MIR SINE MIR 1 178 -84 23 33 0 0 chr6 103674013 103674043 -85605511 + AT_rich Low_complexity Low_complexity 1 30 0 332 253 271 0 chr6 103674541 103674707 -85604847 - MIR SINE MIR -42 220 10 405 228 0 60 chr6 103675174 103675323 -85604231 + L1MA9 LINE L1 6143 6282 -30 213 309 38 76 chr6 103675326 103675536 -85604018 - L2 LINE L2 -1240 2074 1873 1807 153 40 32 chr6 103675722 103676094 -85603460 + THE1C LTR MaLR 1 375 0 1074 193 39 0 chr6 103676205 103676412 -85603142 - MER20 DNA MER1_type 0 219 5 420 316 64 43 chr6 103676469 103676905 -85602649 + MLT1K LTR MaLR 47 588 0 314 256 87 83 chr6 103677841 103678095 -85601459 - L2 LINE L2 -14 3299 3045 346 314 65 0 chr6 103678694 103678818 -85600736 - MIR3 SINE MIR -1 207 76 364 298 48 0 chr6 103679481 103679605 -85599949 - L2 LINE L2 0 3313 3184 1113 178 35 0 chr6 103679619 103679816 -85599738 - MER20 DNA MER1_type -15 204 1 419 278 6 57 chr6 103679946 103680122 -85599432 - L1ME3A LINE L1 -7 6163 5997 374 212 166 26 chr6 103680139 103680332 -85599222 - L1ME3A LINE L1 -260 5910 5691 3673 177 19 49 chr6 103680347 103680801 -85598753 - L1MB7 LINE L1 -12 6241 5775 2262 103 0 0 chr6 103680801 103681082 -85598472 + AluSx SINE Alu 2 282 -30 3673 177 19 49 chr6 103681082 103681438 -85598116 - L1MB7 LINE L1 -478 5775 5458 1510 68 0 0 chr6 103681438 103681629 -85597925 - L1PA7 LINE L1 0 6154 5964 3673 177 19 49 chr6 103681629 103681721 -85597833 - L1MB7 LINE L1 -795 5458 5365 1518 105 13 0 chr6 103681750 103681979 -85597575 - L1MA5A LINE L1 -10 6287 6056 28864 111 15 61 chr6 103682061 103688516 -85591038 - L1PA7 LINE L1 0 6154 12 6446 230 43 18 chr6 103688529 103690450 -85589104 - L1MB7 LINE L1 -920 5295 3424 1837 198 42 13 chr6 103690450 103690829 -85588725 + MLT1B LTR MaLR 1 390 0 6446 230 43 18 chr6 103690829 103691200 -85588354 - L1MB7 LINE L1 -2791 3424 3064 2270 71 0 0 chr6 103691200 103691506 -85588048 + AluY SINE Alu 1 306 0 6446 230 43 18 chr6 103691506 103692806 -85586748 - L1MB7 LINE L1 -3151 3064 1654 27 29 0 0 chr6 103694177 103694211 -85585343 + AT_rich Low_complexity Low_complexity 1 34 0 528 287 67 24 chr6 103694488 103694742 -85584812 - L1ME3A LINE L1 -232 5938 5674 369 214 61 61 chr6 103694811 103695040 -85584514 - L1ME3A LINE L1 -661 5501 5273 683 261 72 46 chr6 103695132 103695527 -85584027 - L1MC/D LINE L1 -468 5653 5343 218 341 82 12 chr6 103695823 103695993 -85583561 - L2 LINE L2 -181 3091 2910 887 325 77 13 chr6 103696453 103696829 -85582725 - MER115 DNA AcHobo -259 434 35 323 255 144 43 chr6 103697279 103697487 -85582067 - L2 LINE L2 -7 3306 3078 186 260 110 50 chr6 103697645 103697745 -85581809 + L2 LINE L2 3115 3220 -93 786 156 0 22 chr6 103698369 103698504 -85581050 + FLAM_C SINE Alu 1 132 -1 1281 311 144 28 chr6 103698821 103699691 -85579863 - L3 LINE CR1 -106 1471 494 891 237 6 0 chr6 103699691 103699868 -85579686 + MER5B DNA MER1_type 1 178 0 1281 311 144 28 chr6 103699868 103699888 -85579666 - L3 LINE CR1 -1083 494 478 262 298 12 12 chr6 103700026 103700110 -85579444 - L3 LINE CR1 -1089 488 405 482 0 17 0 chr6 103700210 103700268 -85579286 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 635 299 143 47 chr6 103700292 103701086 -85578468 - L2 LINE L2 0 3313 2438 190 209 23 0 chr6 103701260 103701303 -85578251 + MIR SINE MIR 36 79 -129 290 275 22 11 chr6 103701448 103701539 -85578015 + MIR3 SINE MIR 112 203 -5 347 308 87 16 chr6 103702098 103702283 -85577271 + MIR SINE MIR 41 238 -24 379 331 0 16 chr6 103703776 103703897 -85575657 + MIR3 SINE MIR 73 191 -17 196 289 30 133 chr6 103703966 103704029 -85575525 + L2 LINE L2 3165 3233 -80 1958 142 33 10 chr6 103704029 103704331 -85575223 - AluSx SINE Alu -3 309 1 196 289 30 133 chr6 103704331 103704433 -85575121 + L2 LINE L2 3233 3313 0 306 297 195 16 chr6 103704602 103704787 -85574767 + MLT1I LTR MaLR 1 218 -191 239 225 101 34 chr6 103704912 103705001 -85574553 + MLT1I LTR MaLR 305 399 -10 746 279 76 8 chr6 103705576 103705813 -85573741 + MIR SINE MIR 1 253 -9 416 301 120 22 chr6 103708840 103709023 -85570531 - MIR SINE MIR -12 250 50 632 260 54 9 chr6 103709777 103709879 -85569675 + MER106A DNA MER1_type 4 100 -136 2193 167 30 23 chr6 103709879 103710310 -85569244 - Tigger2a DNA MER2_type 0 434 1 632 260 54 9 chr6 103710310 103710430 -85569124 + MER106A DNA MER1_type 100 236 0 702 192 96 28 chr6 103710923 103711100 -85568454 - MER5A DNA MER1_type 0 189 1 317 340 40 20 chr6 103711132 103711282 -85568272 - MER5B DNA MER1_type -24 154 2 2308 105 0 10 chr6 103711864 103712178 -85567376 + AluSq SINE Alu 1 311 -2 622 342 71 0 chr6 103714845 103715085 -85564469 + MIR SINE MIR 6 262 0 308 61 20 0 chr6 103715797 103715846 -85563708 + L1MA9 LINE L1 6253 6302 -10 2229 122 0 6 chr6 103716330 103716642 -85562912 - AluSx SINE Alu 0 312 3 21 0 0 0 chr6 103716803 103716824 -85562730 + AT_rich Low_complexity Low_complexity 1 21 0 576 148 23 0 chr6 103717631 103717752 -85561802 + L1MA9 LINE L1 6003 6135 -165 2044 141 0 0 chr6 103718091 103718381 -85561173 - AluSx SINE Alu -22 290 1 3736 213 43 29 chr6 103718670 103719520 -85560034 - MER21B LTR ERV1 0 863 2 2780 165 4 6 chr6 103720016 103720502 -85559052 + MER31A LTR ERV1 1 485 0 243 317 10 29 chr6 103720523 103720627 -85558927 - MIR3 SINE MIR -93 115 14 772 287 37 0 chr6 103720946 103721162 -85558392 + MIR SINE MIR 39 262 0 479 366 53 28 chr6 103721284 103721604 -85557950 - L3 LINE CR1 -37 1540 1213 226 345 0 35 chr6 103722154 103722267 -85557287 + MIR SINE MIR 141 249 -13 679 285 77 42 chr6 103722422 103722801 -85556753 - L1MC4a LINE L1 -159 5962 5571 1576 183 98 25 chr6 103722805 103723172 -85556382 - MSTD LTR MaLR -2 394 1 419 289 33 33 chr6 103723319 103723561 -85555993 - L1MC4a LINE L1 -638 5526 5285 190 352 210 19 chr6 103723678 103723840 -85555714 + MIR SINE MIR 20 212 -50 620 341 136 34 chr6 103723998 103724497 -85555057 + L3 LINE CR1 998 1547 -30 227 302 0 12 chr6 103724768 103724854 -85554700 + CT-rich Low_complexity Low_complexity 4 88 0 517 263 51 20 chr6 103725063 103725325 -85554229 - L1ME3A LINE L1 -208 5962 5696 1011 73 0 0 chr6 103725371 103725508 -85554046 + AluY SINE Alu 175 311 0 209 333 47 31 chr6 103725698 103725827 -85553727 + L2 LINE L2 2761 2891 -423 736 283 76 0 chr6 103725901 103726099 -85553455 + MIR SINE MIR 5 217 -45 34 42 0 0 chr6 103727425 103727473 -85552081 + AT_rich Low_complexity Low_complexity 1 48 0 1908 93 108 0 chr6 103728142 103728411 -85551143 - AluSx SINE Alu -14 298 1 509 293 8 0 chr6 103730360 103730483 -85549071 - MIR SINE MIR -74 188 65 382 226 109 0 chr6 103730731 103730868 -85548686 - MER103 DNA DNA -14 152 1 490 163 17 99 chr6 103731704 103731876 -85547678 + L1ME4a LINE L1 5961 6118 -3 1899 131 43 38 chr6 103732782 103733155 -85546399 - THE1C LTR MaLR 0 375 1 1975 200 24 15 chr6 103733477 103733887 -85545667 - MLT2D LTR ERVL 0 414 1 1943 128 49 7 chr6 103734149 103734437 -85545117 + AluSx SINE Alu 1 300 -12 1326 198 133 17 chr6 103734591 103734944 -85544610 - MSTD LTR MaLR -2 394 1 1165 168 43 0 chr6 103736674 103736882 -85542672 - MER20 DNA MER1_type -1 218 2 308 51 0 0 chr6 103737094 103737133 -85542421 - MLT2C1 LTR ERVL 0 397 359 308 51 0 0 chr6 103737141 103737180 -85542374 - MADE1 DNA Mariner -41 39 1 2420 165 37 63 chr6 103737279 103737787 -85541767 - MLT2B2 LTR ERVL -20 495 1 1121 240 59 77 chr6 103741644 103742136 -85537418 + Charlie4a DNA MER1_type 26 508 0 226 253 0 96 chr6 103743239 103743322 -85536232 - L2 LINE L2 -19 3294 3220 193 259 24 82 chr6 103743454 103743539 -85536015 + MIR SINE MIR 123 202 -60 304 345 40 52 chr6 103744303 103744631 -85534923 - L2 LINE L2 -835 2479 2156 516 237 107 13 chr6 103744785 103745014 -85534540 - Charlie8 DNA MER1_type -2233 184 19 212 0 36 0 chr6 103745171 103745199 -85534355 + (GA)n Simple_repeat Simple_repeat 2 30 0 260 167 0 74 chr6 103746468 103746522 -85533032 + L2 LINE L2 3262 3311 -2 1088 179 85 5 chr6 103746612 103746824 -85532730 + MER30 DNA MER1_type 2 230 0 2373 168 17 2 chr6 103747511 103747933 -85531621 - MSTA LTR MaLR 0 428 1 1225 188 29 0 chr6 103748673 103748880 -85530674 + MER20 DNA MER1_type 2 214 -5 431 288 79 74 chr6 103749105 103749320 -85530234 - L2 LINE L2 0 3272 3057 290 297 135 20 chr6 103750026 103750174 -85529380 - L2 LINE L2 -212 3060 2896 285 301 64 113 chr6 103750205 103750408 -85529146 - L2 LINE L2 -524 2790 2598 264 314 101 31 chr6 103751386 103751545 -85528009 + MIR SINE MIR 43 212 -50 186 43 0 0 chr6 103752647 103752670 -85526884 + (A)n Simple_repeat Simple_repeat 1 23 0 890 41 91 0 chr6 103754916 103755037 -85524517 - L1PA8 LINE L1 -2 6170 6039 319 263 68 8 chr6 103755190 103755308 -85524246 - L1M4c LINE L1 -4678 1706 1582 33 56 0 0 chr6 103755715 103755769 -85523785 + AT_rich Low_complexity Low_complexity 1 54 0 28 0 0 0 chr6 103756712 103756740 -85522814 + AT_rich Low_complexity Low_complexity 1 28 0 1845 163 10 0 chr6 103756925 103757232 -85522322 + AluSx SINE Alu 1 310 -2 1668 192 7 7 chr6 103757818 103758120 -85521434 - MLT1B LTR MaLR 0 390 89 180 0 0 0 chr6 103758430 103758450 -85521104 + (CAA)n Simple_repeat Simple_repeat 2 21 0 420 301 123 0 chr6 103761281 103761427 -85518127 - MIR3 SINE MIR 0 208 45 288 264 77 0 chr6 103761430 103761521 -85518033 - L2 LINE L2 -2 3270 3173 9533 134 11 4 chr6 103761590 103763925 -85515629 - L1PA11 LINE L1 0 6174 3818 254 291 18 55 chr6 103764535 103764645 -85514909 - MIR SINE MIR -51 211 106 832 187 51 93 chr6 103765013 103765270 -85514284 + MIR SINE MIR 8 253 -9 23 86 0 0 chr6 103765435 103765493 -85514061 + AT_rich Low_complexity Low_complexity 1 58 0 4226 159 25 3 chr6 103765627 103766390 -85513164 - L1MA4 LINE L1 0 6300 5521 243 0 0 0 chr6 103766509 103766536 -85513018 + (T)n Simple_repeat Simple_repeat 1 27 0 201 365 56 16 chr6 103766913 103767039 -85512515 + L2 LINE L2 3179 3309 -4 207 0 0 0 chr6 103767367 103767390 -85512164 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 275 298 120 32 chr6 103768434 103768592 -85510962 + L2 LINE L2 3142 3313 0 994 263 44 0 chr6 103768708 103768959 -85510595 + MIR SINE MIR 1 262 0 23 0 0 0 chr6 103770384 103770407 -85509147 + AT_rich Low_complexity Low_complexity 1 23 0 1460 300 24 6 chr6 103771597 103772179 -85507375 - L1ME3A LINE L1 -286 5884 5294 4519 173 40 18 chr6 103772192 103773231 -85506323 - L1MB4 LINE L1 -4 6176 5118 241 293 31 68 chr6 103773208 103773485 -85506069 - L1ME3A LINE L1 -816 5330 5044 * 2272 132 24 16 chr6 103773485 103773857 -85505697 + THE1C LTR MaLR 1 375 0 8768 113 107 21 chr6 103773857 103775312 -85504242 + THE1C-int LTR MaLR 1 1580 0 2405 133 11 16 chr6 103775312 103775689 -85503865 + THE1C LTR MaLR 1 375 0 241 293 31 68 chr6 103775689 103775760 -85503794 - L1ME3A LINE L1 -1099 5047 4993 1755 154 40 17 chr6 103776781 103777080 -85502474 - AluSx SINE Alu -6 306 1 315 239 34 11 chr6 103778414 103778502 -85501052 + L1MC4 LINE L1 6614 6703 -1339 * 392 293 32 8 chr6 103778441 103778564 -85500990 - L1MC4 LINE L1 -1346 6696 6571 292 310 110 0 chr6 103779991 103780091 -85499463 - L2 LINE L2 -2 3270 3160 209 328 0 0 chr6 103780374 103780432 -85499122 - MIR SINE MIR -19 243 186 195 42 0 0 chr6 103780986 103781010 -85498544 + (A)n Simple_repeat Simple_repeat 1 24 0 866 170 22 0 chr6 103781629 103781764 -85497790 - MER45A DNA AcHobo 0 178 41 359 399 50 10 chr6 103783189 103783492 -85496062 + L2 LINE L2 2525 2839 -475 205 303 202 0 chr6 103783744 103783843 -85495711 - L2 LINE L2 -4 3309 3191 532 280 69 30 chr6 103784044 103784276 -85495278 + MIR SINE MIR 21 261 -1 374 257 35 76 chr6 103784298 103784469 -85495085 + MIR SINE MIR 80 243 -19 257 281 94 55 chr6 103784667 103784795 -85494759 - L2 LINE L2 -299 2973 2841 622 228 164 41 chr6 103784809 103785028 -85494526 - MER45C DNA AcHobo -2 951 706 690 293 206 16 chr6 103785032 103785285 -85494269 - MER45C DNA AcHobo -564 389 89 24 0 0 0 chr6 103785402 103785426 -85494128 + AT_rich Low_complexity Low_complexity 1 24 0 31 68 0 0 chr6 103785564 103785623 -85493931 + AT_rich Low_complexity Low_complexity 1 59 0 25 0 0 0 chr6 103785769 103785794 -85493760 + AT_rich Low_complexity Low_complexity 1 25 0 1857 198 133 15 chr6 103785806 103786205 -85493349 + MLT2B1 LTR ERVL 1 446 -74 21 0 0 0 chr6 103786210 103786231 -85493323 + AT_rich Low_complexity Low_complexity 1 21 0 338 86 9 26 chr6 103786347 103786363 -85493191 + MLT2B2 LTR ERVL 455 470 -45 2022 136 7 0 chr6 103786363 103786650 -85492904 - AluSx SINE Alu -23 289 1 338 86 9 26 chr6 103786650 103786701 -85492853 + MLT2B2 LTR ERVL 470 513 -2 183 250 50 17 chr6 103786787 103786847 -85492707 - L2 LINE L2 -543 2771 2710 609 331 158 18 chr6 103786965 103787476 -85492078 - L1MEd LINE L1 -2472 3910 3328 265 225 99 9 chr6 103787483 103787594 -85491960 - L1MEd LINE L1 -3123 3259 3139 475 220 24 36 chr6 103787646 103787663 -85491891 - L1MA10 LINE L1 0 6334 6318 1200 191 4 0 chr6 103787663 103787888 -85491666 - L1ME1 LINE L1 -5 6161 5936 651 233 98 35 chr6 103787887 103788234 -85491320 - L1MEd LINE L1 -3319 3063 2695 * 245 302 28 0 chr6 103788301 103788407 -85491147 - L1MEd LINE L1 -3908 2476 2368 374 294 62 28 chr6 103789027 103789238 -85490316 - L1MEd LINE L1 -4894 1478 1261 495 274 98 82 chr6 103789244 103789612 -85489942 - L1MEd LINE L1 -5743 629 256 22 70 0 0 chr6 103789775 103789818 -85489736 + AT_rich Low_complexity Low_complexity 1 43 0 187 343 91 10 chr6 103790403 103790502 -85489052 + L2 LINE L2 3144 3250 -22 2007 174 69 8 chr6 103790502 103790955 -85488599 + MER6A DNA MER2_type 1 581 -24 269 259 19 0 chr6 103791375 103791429 -85488125 - L2 LINE L2 -12 3260 3206 438 282 77 32 chr6 103791916 103792072 -85487482 + MIR SINE MIR 11 173 -89 2204 87 31 7 chr6 103792960 103793248 -85486306 - AluSx SINE Alu -17 295 1 468 51 0 0 chr6 103793788 103793847 -85485707 + (GA)n Simple_repeat Simple_repeat 2 60 0 210 269 16 82 chr6 103794613 103794719 -85484835 + MER5B DNA MER1_type 8 98 -80 246 211 303 0 chr6 103796553 103796629 -85482925 + AluJ/monomer SINE Alu 1 52 -247 2435 81 0 0 chr6 103796630 103796927 -85482627 + AluSc SINE Alu 1 297 -12 752 189 8 0 chr6 103796927 103797059 -85482495 + AluJo/FRAM SINE Alu 134 266 -46 219 36 0 0 chr6 103797073 103797101 -85482453 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 279 0 0 0 chr6 103797848 103797879 -85481675 + (TG)n Simple_repeat Simple_repeat 2 32 0 361 341 37 0 chr6 103799681 103799816 -85479738 + MIR SINE MIR 2 141 -121 357 269 80 14 chr6 103799863 103800075 -85479479 - L1ME LINE L1 -374 5747 5522 21 71 0 0 chr6 103800201 103800243 -85479311 + AT_rich Low_complexity Low_complexity 1 42 0 342 271 9 0 chr6 103800584 103800691 -85478863 - MER103 DNA DNA -54 112 5 357 298 42 47 chr6 103800976 103801472 -85478082 - L1ME LINE L1 -2309 3837 3343 534 276 212 5 chr6 103802075 103802278 -85477276 - MIR SINE MIR -16 246 2 920 199 16 0 chr6 103803923 103804109 -85475445 - MER5A DNA MER1_type 0 189 1 255 344 62 16 chr6 103804872 103805000 -85474554 - L3b LINE CR1 -153 1430 1297 292 111 16 79 chr6 103805185 103805248 -85474306 - MIR SINE MIR -10 252 194 201 154 0 0 chr6 103806595 103806634 -85472920 + (TATAA)n Simple_repeat Simple_repeat 5 43 0 293 312 146 45 chr6 103806841 103807040 -85472514 - MIR SINE MIR -23 239 21 26 0 0 0 chr6 103807206 103807232 -85472322 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr6 103808001 103808022 -85471532 + AT_rich Low_complexity Low_complexity 1 21 0 31 76 0 0 chr6 103808604 103808670 -85470884 + AT_rich Low_complexity Low_complexity 1 66 0 774 209 70 30 chr6 103809276 103809477 -85470077 - MER63A DNA MER1_type 0 210 2 990 242 283 13 chr6 103810400 103811025 -85468529 + LTR50 LTR ERVL 2 795 0 297 258 0 0 chr6 103811068 103811134 -85468420 + L2 LINE L2 3248 3313 0 370 298 37 43 chr6 103812471 103812632 -85466922 + MIR SINE MIR 97 256 -6 1435 259 32 69 chr6 103814405 103815152 -85464402 + L2 LINE L2 2569 3290 -23 628 341 127 33 chr6 103815293 103815711 -85463843 - L2 LINE L2 -516 2798 2316 1836 161 139 35 chr6 103815711 103815862 -85463692 + MLT1C LTR MaLR 1 135 -332 2171 75 8 0 chr6 103815862 103816128 -85463426 - AluSc SINE Alu -15 294 27 1836 161 139 35 chr6 103816128 103816399 -85463155 + MLT1C LTR MaLR 135 467 0 628 341 127 33 chr6 103816399 103816523 -85463031 - L2 LINE L2 -998 2316 2205 2075 109 10 13 chr6 103817324 103817341 -85462213 - AluSq SINE Alu 0 313 297 272 48 24 0 chr6 103817341 103817383 -85462171 + (TA)n Simple_repeat Simple_repeat 2 44 0 2075 109 10 13 chr6 103817383 103817669 -85461885 - AluSq SINE Alu -16 297 11 726 96 0 0 chr6 103817672 103817776 -85461778 + (TTCC)n Simple_repeat Simple_repeat 3 106 0 334 313 75 63 chr6 103817782 103818050 -85461504 - L2 LINE L2 -2807 507 237 225 219 61 79 chr6 103818324 103818438 -85461116 + L1ME LINE L1 5602 5713 -408 1083 253 172 13 chr6 103818563 103818946 -85460608 + MLT1J2 LTR MaLR 7 450 0 523 353 62 10 chr6 103818947 103819347 -85460207 + L2 LINE L2 2078 2498 -816 1669 162 53 14 chr6 103824945 103825229 -85454325 - AluJo SINE Alu -17 295 1 214 339 83 50 chr6 103825989 103826231 -85453323 + L2 LINE L2 2814 3063 -209 214 231 39 0 chr6 103826258 103826310 -85453244 + (TGAA)n Simple_repeat Simple_repeat 1 54 0 13258 201 47 14 chr6 103827786 103828503 -85451051 - L1PB1 LINE L1 -1 6866 6174 2591 60 0 0 chr6 103828503 103828804 -85450750 - AluY SINE Alu -10 301 1 13258 201 47 14 chr6 103828804 103829447 -85450107 - L1PB1 LINE L1 -693 6174 5554 189 0 0 0 chr6 103829447 103829468 -85450086 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 13258 201 47 14 chr6 103829468 103834610 -85444944 - L1PB1 LINE L1 -1313 5554 6 201 39 0 0 chr6 103836111 103836137 -85443417 + (TTA)n Simple_repeat Simple_repeat 2 27 0 270 0 0 0 chr6 103836806 103836836 -85442718 + (T)n Simple_repeat Simple_repeat 1 30 0 235 313 9 18 chr6 103838857 103838969 -85440585 + MLT1H LTR MaLR 432 542 -7 333 0 0 0 chr6 103840184 103840221 -85439333 + (CA)n Simple_repeat Simple_repeat 2 38 0 2315 130 13 19 chr6 103840659 103841035 -85438519 + THE1C LTR MaLR 1 374 -1 2017 152 87 0 chr6 103841266 103841622 -85437932 - MLT1B LTR MaLR -1 389 3 256 390 10 6 chr6 103842359 103842515 -85437039 + MIR3 SINE MIR 12 169 -63 334 232 32 11 chr6 103845865 103845960 -85433594 - MIR SINE MIR -56 206 110 289 237 7 86 chr6 103846471 103846610 -85432944 + HAL1b LINE L1 746 873 -475 292 283 176 19 chr6 103847220 103847379 -85432175 + MIR3 SINE MIR 25 208 0 325 304 190 8 chr6 103848556 103848742 -85430812 - MIR SINE MIR -44 218 3 259 311 100 0 chr6 103849553 103849733 -85429821 + L2 LINE L2 1916 2113 -1201 2237 102 0 34 chr6 103850927 103851251 -85428303 + AluSq SINE Alu 1 313 0 1596 232 57 19 chr6 103851416 103851894 -85427660 + MLT1D LTR MaLR 10 505 0 845 225 139 12 chr6 103852033 103852291 -85427263 - L2 LINE L2 0 3313 3023 2160 111 46 27 chr6 103852377 103852745 -85426809 + THE1C LTR MaLR 1 375 0 14143 155 57 8 chr6 103853966 103856577 -85422977 - L1M1 LINE L1 -4810 2755 19 1550 185 27 17 chr6 103857660 103857957 -85421597 - AluJo SINE Alu -1 311 12 234 321 170 30 chr6 103858010 103858281 -85421273 + L2 LINE L2 3005 3313 0 202 411 9 0 chr6 103860165 103860272 -85419282 + MIR SINE MIR 28 135 -73 479 221 214 13 chr6 103861141 103861295 -85418259 + MER45C DNA AcHobo 765 949 -4 183 129 0 0 chr6 103862194 103862225 -85417329 + (T)n Simple_repeat Simple_repeat 1 31 0 1572 142 124 149 chr6 103862684 103863121 -85416433 + THE1C LTR MaLR 1 373 -2 9756 115 55 8 chr6 103863123 103864632 -85414922 + THE1C-int LTR MaLR 1 1580 0 2122 123 15 54 chr6 103864632 103865022 -85414532 + THE1C LTR MaLR 1 375 0 188 218 115 103 chr6 103865832 103865919 -85413635 + MIR3 SINE MIR 119 206 -2 310 293 16 24 chr6 103867791 103867914 -85411640 + L1MEd LINE L1 94 215 -5990 251 409 15 5 chr6 103868237 103868440 -85411114 + L1MEd LINE L1 585 789 -5416 30 27 0 0 chr6 103868531 103868568 -85410986 + AT_rich Low_complexity Low_complexity 1 37 0 402 286 92 10 chr6 103868686 103868882 -85410672 + L1MEd LINE L1 1372 1583 -4813 687 298 113 23 chr6 103869271 103870561 -85408993 + L1MEd LINE L1 2216 3621 -2594 346 324 55 34 chr6 103870690 103870928 -85408626 + L1ME LINE L1 519 761 -5309 624 276 72 21 chr6 103870944 103871277 -85408277 - L1M4 LINE L1 -1922 4224 3875 1536 224 38 66 chr6 103871287 103871839 -85407715 - L1MC/D LINE L1 -743 5403 4899 207 320 67 13 chr6 103872801 103872876 -85406678 - L2 LINE L2 -78 3194 3116 299 352 64 52 chr6 103874909 103875176 -85404378 - L2 LINE L2 -18 3254 2985 341 301 62 0 chr6 103875295 103875408 -85404146 - L2 LINE L2 -1 3312 3193 332 333 0 19 chr6 103876890 103877046 -85402508 - MLT1K LTR MaLR -119 469 317 1077 156 96 18 chr6 103877959 103878177 -85401377 - MER46A DNA MER2_type -1 235 1 202 100 57 14 chr6 103878901 103878971 -85400583 + (TA)n Simple_repeat Simple_repeat 1 73 0 227 214 0 18 chr6 103879092 103879148 -85400406 + T-rich Low_complexity Low_complexity 2 56 0 339 306 123 18 chr6 103879812 103879982 -85399572 - L2 LINE L2 -5 3308 3121 245 255 338 25 chr6 103881304 103881461 -85398093 - MIR SINE MIR -8 254 49 185 270 14 81 chr6 103882281 103882355 -85397199 + MER5A DNA MER1_type 93 161 -28 261 222 50 40 chr6 103885268 103885367 -85394187 + MIR SINE MIR 75 174 -88 271 252 101 101 chr6 103885871 103886010 -85393544 - MIR SINE MIR -34 228 90 716 218 50 11 chr6 103886043 103886222 -85393332 - MER5A DNA MER1_type -2 187 2 399 210 76 0 chr6 103886995 103887114 -85392440 - MER103 DNA DNA -14 152 25 21 57 0 0 chr6 103888954 103888989 -85390565 + AT_rich Low_complexity Low_complexity 1 35 0 301 294 4 15 chr6 103889148 103889259 -85390295 + MIR SINE MIR 38 146 -62 26 30 0 0 chr6 103891691 103891724 -85387830 + AT_rich Low_complexity Low_complexity 1 33 0 925 148 7 0 chr6 103892108 103892243 -85387311 - AluJo SINE Alu -176 136 1 230 167 0 0 chr6 103892476 103892518 -85387036 - tRNA-Thr-ACA tRNA tRNA -34 42 1 408 303 91 23 chr6 103894447 103894668 -85384886 - MIR SINE MIR -19 243 8 261 0 0 0 chr6 103894768 103894797 -85384757 + (T)n Simple_repeat Simple_repeat 1 29 0 327 179 0 0 chr6 103895271 103895338 -85384216 + (TA)n Simple_repeat Simple_repeat 1 67 0 5741 207 99 45 chr6 103895901 103897540 -85382014 + MER52A LTR ERV1 28 1755 0 359 61 0 298 chr6 103897943 103897997 -85381557 - MADE1 DNA Mariner 0 80 76 2471 53 30 0 chr6 103897997 103898297 -85381257 + AluY SINE Alu 3 311 0 359 61 0 298 chr6 103898297 103898356 -85381198 - MADE1 DNA Mariner -4 76 1 434 311 120 22 chr6 103899259 103899484 -85380070 + MIR SINE MIR 6 252 -10 45 45 0 0 chr6 103900256 103900322 -85379232 + AT_rich Low_complexity Low_complexity 1 66 0 26 50 0 0 chr6 103900345 103900385 -85379169 + AT_rich Low_complexity Low_complexity 1 40 0 509 242 68 0 chr6 103900446 103900578 -85378976 + MIR SINE MIR 36 176 -86 29 70 0 0 chr6 103900595 103900652 -85378902 + AT_rich Low_complexity Low_complexity 1 57 0 854 298 123 27 chr6 103900737 103902329 -85377225 - L1ME LINE L1 -359 5811 4066 227 143 107 0 chr6 103902390 103902446 -85377108 - L1MB2 LINE L1 -3 6168 6107 * 306 241 65 81 chr6 103902431 103902692 -85376862 - L1ME LINE L1 -2101 4045 3789 206 425 0 9 chr6 103902696 103902809 -85376745 - L2 LINE L2 -308 3005 2894 198 311 0 0 chr6 103904537 103904611 -85374943 - MIR SINE MIR -46 216 143 804 256 123 4 chr6 103904620 103904847 -85374707 + MIR SINE MIR 2 255 -7 316 218 36 82 chr6 103904877 103904987 -85374567 - MIR SINE MIR -122 140 36 26 0 0 0 chr6 103905052 103905078 -85374476 + AT_rich Low_complexity Low_complexity 1 26 0 319 347 185 5 chr6 103905482 103905871 -85373683 + L3 LINE CR1 666 1124 -453 22 0 0 0 chr6 103906252 103906274 -85373280 + AT_rich Low_complexity Low_complexity 1 22 0 439 315 106 13 chr6 103906511 103906881 -85372673 - L1ME4a LINE L1 -290 5831 5421 512 269 102 33 chr6 103907168 103907443 -85372111 + LTR16C LTR ERVL 192 485 -6 2057 122 0 10 chr6 103907446 103907758 -85371796 + AluSq SINE Alu 1 309 0 1908 53 53 0 chr6 103907853 103908116 -85371438 - L1PA13 LINE L1 -19 6144 5868 225 91 0 0 chr6 103908116 103908149 -85371405 + L1PA13 LINE L1 5843 5875 -288 29 60 0 0 chr6 103908269 103908319 -85371235 + AT_rich Low_complexity Low_complexity 1 50 0 3025 267 51 43 chr6 103908355 103909696 -85369858 - L1MEc LINE L1 -5012 1384 34 283 318 45 60 chr6 103910472 103910673 -85368881 - L1ME3A LINE L1 -8 6398 6201 570 271 112 30 chr6 103910729 103911032 -85368522 - L1ME3A LINE L1 -209 6197 5870 564 294 59 50 chr6 103911033 103911562 -85367992 - L1ME3A LINE L1 -710 5696 5157 1499 150 65 71 chr6 103911562 103911856 -85367698 - AluSx SINE Alu -20 292 1 564 294 59 50 chr6 103911856 103911964 -85367590 - L1ME3A LINE L1 -1249 5157 5051 1036 123 0 0 chr6 103911990 103912145 -85367409 - L1MA2 LINE L1 0 6304 6150 351 277 0 0 chr6 103912145 103912239 -85367315 + L1M4 LINE L1 3751 3844 -2302 560 97 0 82 chr6 103912270 103912465 -85367089 + (TA)n Simple_repeat Simple_repeat 2 180 0 242 0 208 0 chr6 103912468 103912521 -85367033 + (CTATA)n Simple_repeat Simple_repeat 2 65 0 460 67 0 111 chr6 103912524 103913046 -85366508 + (TA)n Simple_repeat Simple_repeat 1 464 0 237 197 0 15 chr6 103913144 103913210 -85366344 + L1MC4 LINE L1 6632 6696 -1346 226 286 0 0 chr6 103913214 103913305 -85366249 + L1MC4 LINE L1 6615 6705 -1337 655 98 3 82 chr6 103913308 103914119 -85365435 + (TA)n Simple_repeat Simple_repeat 1 746 0 2185 113 11 14 chr6 103914144 103914499 -85365055 - L1MA3 LINE L1 -265 6040 5687 533 290 49 36 chr6 103914498 103914863 -85364691 - L1ME3A LINE L1 -1321 5061 4692 * 1080 278 19 19 chr6 103914947 103915415 -85364139 - L1ME3A LINE L1 -2214 4168 3701 22 0 0 0 chr6 103915415 103915437 -85364117 + AT_rich Low_complexity Low_complexity 1 22 0 821 218 80 11 chr6 103915454 103915642 -85363912 - MLT1B LTR MaLR 0 390 190 296 284 56 45 chr6 103915654 103915922 -85363632 - L1ME3A LINE L1 -3685 2697 2427 414 325 33 12 chr6 103916220 103916463 -85363091 - L1ME3A LINE L1 -4886 1498 1251 1222 213 40 22 chr6 103916585 103916862 -85362692 - MLT1F1 LTR MaLR -1 566 285 2537 217 83 12 chr6 103917021 103917709 -85361845 + LTR68 LTR ERV1 1 737 -3 180 111 0 0 chr6 103918122 103918149 -85361405 + (T)n Simple_repeat Simple_repeat 1 27 0 395 304 41 26 chr6 103918283 103918477 -85361077 - MLT1F1 LTR MaLR -302 247 51 364 220 66 22 chr6 103918731 103918822 -85360732 + MLT1J2 LTR MaLR 65 159 -291 316 319 101 27 chr6 103918872 103919060 -85360494 + MLT1J2 LTR MaLR 244 445 -5 211 254 0 45 chr6 103919204 103919271 -85360283 + MIR3 SINE MIR 131 194 -14 1492 124 0 30 chr6 103919273 103919506 -85360048 - AluSg/x SINE Alu 0 310 85 623 273 35 0 chr6 103919707 103919879 -85359675 + MIR SINE MIR 85 262 0 23 0 0 0 chr6 103920271 103920294 -85359260 + AT_rich Low_complexity Low_complexity 1 23 0 448 304 16 8 chr6 103923673 103923798 -85355756 + L2 LINE L2 3188 3313 0 454 283 159 75 chr6 103925286 103925431 -85354123 + MLT1J LTR MaLR 1 132 -379 650 148 9 9 chr6 103925431 103925546 -85354008 + L1PA15 LINE L1 6051 6165 0 454 283 159 75 chr6 103925546 103925708 -85353846 + MLT1J LTR MaLR 132 334 -177 1208 188 40 12 chr6 103927121 103927371 -85352183 + MLT1C LTR MaLR 210 466 -1 342 0 0 0 chr6 103928705 103928743 -85350811 + (CA)n Simple_repeat Simple_repeat 2 39 0 2213 232 19 5 chr6 103929958 103930523 -85349031 - L1M4 LINE L1 -1646 4500 3928 1030 278 28 55 chr6 103930509 103930568 -85348986 - L1MDb LINE L1 -5057 1352 1293 * 209 56 0 28 chr6 103930568 103930604 -85348950 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1885 153 4 0 chr6 103930606 103930887 -85348667 - AluJo SINE Alu -30 282 1 1030 278 28 55 chr6 103930887 103931403 -85348151 - L1MDb LINE L1 -5117 1292 790 240 304 0 25 chr6 103932137 103932216 -85347338 + CT-rich Low_complexity Low_complexity 2 78 0 186 103 0 0 chr6 103932231 103932260 -85347294 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 335 314 34 8 chr6 103932396 103932514 -85347040 - MIR3 SINE MIR -79 129 9 691 267 65 4 chr6 103932790 103933037 -85346517 - MLT1C LTR MaLR 0 467 206 289 287 211 0 chr6 103934339 103934466 -85345088 + MIR3 SINE MIR 20 173 -35 307 267 33 11 chr6 103934947 103935037 -85344517 + Charlie7 DNA MER1_type 10 101 -2511 443 240 48 62 chr6 103936691 103936837 -85342717 + MIR SINE MIR 109 252 -10 21 57 0 0 chr6 103937615 103937650 -85341904 + AT_rich Low_complexity Low_complexity 1 35 0 1815 188 73 39 chr6 103940280 103940680 -85338874 - MLT1C LTR MaLR -1 466 49 249 208 38 0 chr6 103940866 103940919 -85338635 - L2 LINE L2 -35 3237 3183 288 212 15 0 chr6 103941247 103941313 -85338241 - Charlie8 DNA MER1_type -2270 147 81 694 160 14 35 chr6 103943140 103943284 -85336270 - L1MD3 LINE L1 -210 7785 7645 656 164 9 9 chr6 103943528 103943644 -85335910 - MLT1A2 LTR MaLR 0 374 259 785 289 63 53 chr6 103943651 103944045 -85335509 - LTR67 LTR ERVL -141 416 19 248 233 50 33 chr6 103944420 103944540 -85335014 - L1M1 LINE L1 -851 5453 5332 2342 77 10 0 chr6 103944543 103944842 -85334712 - AluSc SINE Alu -2 307 6 799 294 141 45 chr6 103944849 103945343 -85334211 - L1M4 LINE L1 -813 5333 4888 24 32 0 0 chr6 103945343 103945374 -85334180 + AT_rich Low_complexity Low_complexity 1 31 0 799 294 141 45 chr6 103945374 103945469 -85334085 - L1M4 LINE L1 -1258 4888 4804 23 0 0 0 chr6 103945469 103945492 -85334062 + AT_rich Low_complexity Low_complexity 1 23 0 799 294 141 45 chr6 103945492 103945631 -85333923 - L1M4 LINE L1 -1342 4804 4477 225 0 0 0 chr6 103946735 103946760 -85332794 + (T)n Simple_repeat Simple_repeat 1 25 0 283 267 44 22 chr6 103947410 103947500 -85332054 + L2 LINE L2 3221 3312 -1 227 358 80 13 chr6 103947742 103947893 -85331661 + MIR SINE MIR 31 191 -71 627 67 0 0 chr6 103947977 103948066 -85331488 + (TTTC)n Simple_repeat Simple_repeat 3 91 0 2081 109 16 22 chr6 103948068 103948381 -85331173 - AluSx SINE Alu -1 311 1 26 0 0 0 chr6 103948436 103948462 -85331092 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr6 103948606 103948632 -85330922 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1731 144 73 28 chr6 103949833 103950188 -85329366 + THE1C LTR MaLR 5 375 0 230 230 14 27 chr6 103950657 103950731 -85328823 - L1MC5 LINE L1 -385 7576 7504 1090 288 56 59 chr6 103950894 103951755 -85327799 - L1MEd LINE L1 -4867 1252 395 833 163 114 45 chr6 103951860 103952062 -85327492 + MER20 DNA MER1_type 1 216 -3 641 274 153 7 chr6 103952275 103952556 -85326998 - L1MC4a LINE L1 -1982 5826 5505 324 237 123 88 chr6 103952613 103953157 -85326397 - L1MC5 LINE L1 -86 7875 7313 232 250 109 71 chr6 103953143 103953327 -85326227 - L1MC4 LINE L1 -547 7495 7305 * 410 246 45 90 chr6 103953343 103953422 -85326132 - L1MC5 LINE L1 -747 7214 7133 2504 63 3 0 chr6 103953422 103953723 -85325831 - AluY SINE Alu -9 302 1 410 246 45 90 chr6 103953723 103953911 -85325643 - L1MC5 LINE L1 -828 7133 6959 698 245 5 0 chr6 103953947 103954003 -85325551 - L1MC4 LINE L1 -825 7023 6969 2357 41 21 0 chr6 103954003 103954168 -85325386 - AluY SINE Alu -15 296 121 405 0 0 0 chr6 103954168 103954213 -85325341 + (TG)n Simple_repeat Simple_repeat 2 46 0 2357 41 21 0 chr6 103954213 103954337 -85325217 - AluY SINE Alu -190 121 1 698 245 5 0 chr6 103954337 103954521 -85325033 - L1MC4 LINE L1 -879 6969 6742 378 294 163 39 chr6 103954774 103955369 -85324185 - L1MC4a LINE L1 -991 5155 4487 433 306 81 48 chr6 103955536 103955869 -85323685 - MLT1J LTR MaLR -144 367 24 303 294 69 70 chr6 103956081 103956596 -85322958 - L1MC4a LINE L1 -1929 4217 3700 281 250 17 26 chr6 103957400 103957516 -85322038 - HAL1b LINE L1 -569 779 665 23 0 0 0 chr6 103957532 103957555 -85321999 + AT_rich Low_complexity Low_complexity 1 23 0 576 319 55 63 chr6 103957557 103957955 -85321599 - HAL1b LINE L1 -785 563 169 5404 168 24 16 chr6 103957968 103959739 -85319815 - L1PA16 LINE L1 -9 6157 4365 369 0 0 0 chr6 103959739 103959780 -85319774 + (TG)n Simple_repeat Simple_repeat 2 42 0 5404 168 24 16 chr6 103959780 103960023 -85319531 - L1PA16 LINE L1 -1801 4365 4125 243 61 0 0 chr6 103960598 103960631 -85318923 + (TG)n Simple_repeat Simple_repeat 1 33 0 261 231 0 0 chr6 103961348 103961400 -85318154 + MIR SINE MIR 205 256 -6 22 35 0 0 chr6 103961461 103961490 -85318064 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr6 103963264 103963294 -85316260 + AT_rich Low_complexity Low_complexity 1 30 0 289 239 14 0 chr6 103965753 103965824 -85313730 + MIR SINE MIR 121 192 -70 1253 191 110 46 chr6 103966146 103966322 -85313232 - MSTD LTR MaLR 0 396 233 465 34 0 0 chr6 103966322 103966381 -85313173 + (GA)n Simple_repeat Simple_repeat 2 60 0 1253 191 110 46 chr6 103966381 103966576 -85312978 - MSTD LTR MaLR -163 233 1 2255 102 0 3 chr6 103966877 103967172 -85312382 - AluSx SINE Alu -18 294 1 595 228 51 23 chr6 103967441 103967674 -85311880 - MLT1I LTR MaLR -23 386 97 1542 194 12 80 chr6 103967876 103968277 -85311277 - MLT1A2 LTR MaLR 0 374 1 621 280 152 25 chr6 103968831 103969352 -85310202 + L2 LINE L2 2695 3279 -34 541 336 22 47 chr6 103969408 103969682 -85309872 - L3 LINE CR1 -219 1358 1092 232 359 83 44 chr6 103970336 103970517 -85309037 - L3 LINE CR1 -793 784 597 3777 132 49 71 chr6 103970950 103971753 -85307801 + LTR1 LTR ERV1 1 785 0 250 301 68 0 chr6 103972291 103972364 -85307190 - L2 LINE L2 -11 3302 3225 639 214 92 33 chr6 103972805 103973077 -85306477 - MLT1F LTR MaLR -32 510 204 239 162 0 0 chr6 103973074 103973111 -85306443 + MLT1B LTR MaLR 354 390 0 * 231 146 0 0 chr6 103973526 103973567 -85305987 + (CA)n Simple_repeat Simple_repeat 2 42 0 1907 150 52 3 chr6 103973567 103973894 -85305660 - MER2 DNA MER2_type 0 344 2 25 31 0 0 chr6 103974606 103974638 -85304916 + AT_rich Low_complexity Low_complexity 1 32 0 339 65 0 0 chr6 103974847 103974893 -85304661 + (TG)n Simple_repeat Simple_repeat 1 46 0 371 293 122 24 chr6 103975696 103975901 -85303653 - L2 LINE L2 -1 3312 3088 400 333 69 48 chr6 103976030 103976450 -85303104 - L2 LINE L2 -21 3251 2823 684 366 46 30 chr6 103976745 103977307 -85302247 + L2 LINE L2 1707 2277 -1037 206 358 0 0 chr6 103977304 103977385 -85302169 - L2 LINE L2 -1985 1329 1249 * 298 340 158 27 chr6 103977447 103977921 -85301633 - L2 LINE L2 -2197 1117 582 268 250 0 0 chr6 103979757 103979825 -85299729 + A-rich Low_complexity Low_complexity 1 68 0 251 308 179 54 chr6 103980533 103981124 -85298430 + L2 LINE L2 2579 3251 -21 973 220 75 19 chr6 103981526 103981794 -85297760 + LTR37B LTR ERV1 186 468 0 239 157 20 0 chr6 103982894 103982945 -85296609 + CT-rich Low_complexity Low_complexity 1 52 0 180 167 0 0 chr6 103982946 103982976 -85296578 + L2 LINE L2 3265 3294 -19 215 224 20 20 chr6 103983184 103983233 -85296321 - L2 LINE L2 -12 3260 3212 399 286 82 6 chr6 103985733 103985904 -85293650 + MIR SINE MIR 79 262 0 475 224 141 21 chr6 103986286 103986478 -85293076 + MIR SINE MIR 36 250 -12 201 74 0 0 chr6 103986892 103986919 -85292635 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 219 317 127 43 chr6 103987713 103987926 -85291628 - MIR SINE MIR -12 250 22 369 272 16 40 chr6 103988234 103988359 -85291195 - L2 LINE L2 0 3313 3192 923 280 121 27 chr6 103988423 103988827 -85290727 + MLT1J LTR MaLR 59 500 -11 270 202 225 22 chr6 103988969 103989058 -85290496 + MLT1K LTR MaLR 440 546 -42 230 329 37 12 chr6 103989201 103989283 -85290271 - MIR3 SINE MIR -40 168 85 183 184 208 64 chr6 103990387 103990512 -85289042 + L2 LINE L2 3076 3218 -95 341 253 81 0 chr6 103990637 103990724 -85288830 + L1MC4 LINE L1 6610 6703 -1339 482 310 105 0 chr6 103990834 103991005 -85288549 - MIR3 SINE MIR -3 205 17 21 0 0 0 chr6 103991255 103991276 -85288278 + AT_rich Low_complexity Low_complexity 1 21 0 1625 45 0 10 chr6 103991552 103991754 -85287800 + L1PA3 LINE L1 5956 6155 0 438 255 152 7 chr6 103992683 103992828 -85286726 + MIR3 SINE MIR 22 187 -21 235 337 82 10 chr6 103993370 103993468 -85286086 - L2 LINE L2 0 3313 3209 246 331 120 30 chr6 103993710 103993843 -85285711 - L2 LINE L2 -411 2903 2759 368 310 152 18 chr6 103994316 103994487 -85285067 + MIR3 SINE MIR 10 203 -5 2259 57 7 0 chr6 103995113 103995445 -85284109 + AluY SINE Alu 1 334 0 1420 183 41 52 chr6 103996062 103996466 -85283088 - L1ME1 LINE L1 -5 6161 5762 40699 34 22 0 chr6 103996513 104002523 -85277031 - L1PA2 LINE L1 -4 6151 9 2062 249 111 28 chr6 104002558 104004255 -85275299 - L1ME1 LINE L1 -520 5646 3798 * 7210 207 70 12 chr6 104004250 104007272 -85272282 - L1MA4 LINE L1 -267 5921 2563 522 83 0 0 chr6 104007289 104007361 -85272193 + (TCCCC)n Simple_repeat Simple_repeat 5 76 0 403 260 19 13 chr6 104007381 104007535 -85272019 - L1MA4 LINE L1 -4067 1967 1813 185 32 48 63 chr6 104007543 104007606 -85271948 + (TA)n Simple_repeat Simple_repeat 1 62 0 413 262 31 36 chr6 104007620 104007845 -85271709 - L1MA4 LINE L1 -4244 1790 1567 3204 243 34 24 chr6 104007858 104008975 -85270579 - L1MA4 LINE L1 -4541 1493 366 277 321 16 47 chr6 104010039 104010232 -85269322 - L1MA4 LINE L1 -5600 355 169 2621 151 7 9 chr6 104010237 104010675 -85268879 + MER1A DNA MER1_type 1 437 -92 1639 159 16 12 chr6 104010676 104010934 -85268620 - AluJb SINE Alu -53 259 1 720 262 28 82 chr6 104010934 104011419 -85268135 - L1PBb LINE L1 -4858 1345 792 186 309 0 0 chr6 104011849 104011904 -85267650 + L2 LINE L2 13 67 -3247 972 267 71 11 chr6 104012385 104014950 -85264604 - L1MEc LINE L1 -3390 2825 43 195 376 105 23 chr6 104015046 104015179 -85264375 + L2 LINE L2 3128 3271 -1 394 140 58 6 chr6 104015262 104015433 -85264121 + (TA)n Simple_repeat Simple_repeat 1 180 0 232 185 56 0 chr6 104015443 104015497 -85264057 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 30 45 0 0 chr6 104015787 104015831 -85263723 + AT_rich Low_complexity Low_complexity 1 44 0 1121 207 21 1 chr6 104017087 104017394 -85262160 + MLT1A1 LTR MaLR 1 341 -24 21 0 0 0 chr6 104017488 104017509 -85262045 + AT_rich Low_complexity Low_complexity 1 21 0 1788 282 176 24 chr6 104018499 104019655 -85259899 - L2 LINE L2 -4 3309 1977 1876 136 41 12 chr6 104020443 104020782 -85258772 + THE1C LTR MaLR 1 349 -26 3465 108 10 45 chr6 104020791 104021367 -85258187 + THE1C-int LTR MaLR 1025 1580 0 2134 133 32 16 chr6 104021367 104021736 -85257818 + THE1C LTR MaLR 1 375 0 2348 164 69 42 chr6 104022065 104022571 -85256983 - MLT2B1 LTR ERVL 0 520 1 254 296 31 10 chr6 104022656 104022754 -85256800 + MIR SINE MIR 122 221 -41 594 229 170 0 chr6 104024119 104024272 -85255282 - MER5A DNA MER1_type -1 188 10 183 276 0 0 chr6 104026284 104026360 -85253194 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 474 302 19 7 chr6 104026822 104026992 -85252562 - MIR SINE MIR -31 177 5 369 236 181 70 chr6 104027127 104027501 -85252053 - L2 LINE L2 -124 3189 2754 182 161 66 7 chr6 104027550 104027687 -85251867 + (TA)n Simple_repeat Simple_repeat 2 146 0 22 0 0 0 chr6 104027696 104027718 -85251836 + AT_rich Low_complexity Low_complexity 1 22 0 223 266 127 0 chr6 104029116 104029195 -85250359 + L2 LINE L2 3193 3281 -32 278 316 79 33 chr6 104030794 104031009 -85248545 + MIR SINE MIR 35 259 -3 832 203 6 0 chr6 104031198 104031356 -85248198 - MER5A DNA MER1_type 0 189 31 265 236 18 0 chr6 104031721 104031776 -85247778 + L2 LINE L2 3258 3313 0 187 219 24 0 chr6 104031829 104031870 -85247684 + MIR SINE MIR 64 105 -157 399 205 0 0 chr6 104031950 104032028 -85247526 + MER116 DNA Mariner 1 78 -2 202 205 0 0 chr6 104032461 104032500 -85247054 + CT-rich Low_complexity Low_complexity 1 39 0 869 214 124 0 chr6 104033023 104033253 -85246301 + MIR SINE MIR 5 262 0 2455 58 0 3 chr6 104034856 104035151 -85244403 + AluY SINE Alu 1 294 -17 213 237 144 41 chr6 104035676 104035773 -85243781 - MIR SINE MIR -75 187 81 2048 144 0 0 chr6 104036183 104036488 -85243066 - AluSx SINE Alu -7 305 1 23 68 0 0 chr6 104036488 104036532 -85243022 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr6 104036751 104036772 -85242782 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 104037208 104037229 -85242325 + AT_rich Low_complexity Low_complexity 1 21 0 266 272 157 27 chr6 104038097 104038244 -85241310 - L2 LINE L2 -856 2458 2293 27 29 0 0 chr6 104038471 104038505 -85241049 + AT_rich Low_complexity Low_complexity 1 34 0 209 156 44 0 chr6 104038626 104038671 -85240883 + CT-rich Low_complexity Low_complexity 2 48 0 234 0 0 0 chr6 104039463 104039489 -85240065 + (T)n Simple_repeat Simple_repeat 1 26 0 381 77 0 0 chr6 104039792 104039844 -85239710 + MSTA LTR MaLR 377 428 0 184 362 39 31 chr6 104039958 104040085 -85239469 + MIR SINE MIR 20 147 -115 365 206 68 75 chr6 104041214 104041333 -85238221 + MLT1B LTR MaLR 1 118 -272 914 75 52 22 chr6 104041333 104041467 -85238087 + THE1C LTR MaLR 3 140 -235 439 238 24 24 chr6 104041797 104041923 -85237631 - MSTA LTR MaLR -302 126 1 2196 100 0 19 chr6 104041988 104042298 -85237256 - AluSg SINE Alu -6 304 1 1911 189 112 13 chr6 104042616 104043070 -85236484 + MLT1D LTR MaLR 3 501 -4 22 0 0 0 chr6 104045300 104045322 -85234232 + AT_rich Low_complexity Low_complexity 1 22 0 565 258 66 59 chr6 104046241 104046669 -85232885 + L2 LINE L2 2786 3313 0 236 286 0 0 chr6 104048387 104048450 -85231104 - MIR SINE MIR -21 241 179 247 238 70 116 chr6 104048755 104048867 -85230687 - MER103 DNA DNA -1 165 62 3147 161 48 0 chr6 104048867 104049446 -85230108 + L1MB3 LINE L1 5577 6183 0 247 238 70 116 chr6 104049446 104049505 -85230049 - MER103 DNA DNA -104 62 2 229 279 150 21 chr6 104049776 104049916 -85229638 - L2 LINE L2 -819 2495 2338 342 238 0 0 chr6 104050661 104050724 -85228830 + L2 LINE L2 3251 3313 0 25 31 0 0 chr6 104051187 104051219 -85228335 + AT_rich Low_complexity Low_complexity 1 32 0 209 229 16 0 chr6 104053795 104053856 -85225698 + A-rich Low_complexity Low_complexity 1 62 0 895 183 11 48 chr6 104054098 104054284 -85225270 + MER20 DNA MER1_type 38 216 -3 349 348 46 40 chr6 104054958 104055286 -85224268 - L1 LINE L1 -1637 4509 4180 527 309 18 12 chr6 104055381 104055549 -85224005 - MER91A DNA MER1_type -25 171 3 313 351 20 0 chr6 104055563 104055711 -85223843 - L1 LINE L1 -1967 4179 4029 511 294 99 59 chr6 104055773 104056490 -85223064 + L1M4 LINE L1 4312 5057 -1089 341 44 73 44 chr6 104056705 104056842 -85222712 + (TA)n Simple_repeat Simple_repeat 1 141 0 282 250 19 9 chr6 104057764 104057872 -85221682 + (TA)n Simple_repeat Simple_repeat 1 109 0 1709 189 18 6 chr6 104057910 104058249 -85221305 + MER2 DNA MER2_type 1 343 -1 24 32 0 0 chr6 104058454 104058485 -85221069 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr6 104060084 104060119 -85219435 + AT_rich Low_complexity Low_complexity 1 35 0 1502 162 98 11 chr6 104062503 104062769 -85216785 + AluJo SINE Alu 1 289 -23 207 0 0 0 chr6 104062902 104062925 -85216629 + (CA)n Simple_repeat Simple_repeat 1 23 0 338 154 13 0 chr6 104062931 104063009 -85216545 + CT-rich Low_complexity Low_complexity 2 80 0 270 0 0 0 chr6 104063011 104063041 -85216513 + (CA)n Simple_repeat Simple_repeat 1 30 0 329 234 43 11 chr6 104063973 104064067 -85215487 - MIR SINE MIR -3 259 163 634 242 198 18 chr6 104064074 104064347 -85215207 - LTR50 LTR ERVL -2 793 472 518 244 13 26 chr6 104064572 104064728 -85214826 - MIR SINE MIR -103 159 6 334 338 55 7 chr6 104064789 104064934 -85214620 + MIR3 SINE MIR 41 192 -16 194 256 0 0 chr6 104065388 104065427 -85214127 - L2 LINE L2 -218 3054 3016 23 33 0 0 chr6 104065528 104065558 -85213996 + AT_rich Low_complexity Low_complexity 1 30 0 780 202 84 14 chr6 104065754 104065967 -85213587 + L1ME1 LINE L1 5785 6012 -154 349 314 101 0 chr6 104066237 104066406 -85213148 + MIR SINE MIR 20 205 -57 247 221 130 0 chr6 104066466 104066543 -85213011 + MIR3 SINE MIR 109 195 -13 384 59 0 0 chr6 104068283 104068334 -85211220 + (TC)n Simple_repeat Simple_repeat 2 52 0 243 259 17 0 chr6 104068334 104068392 -85211162 + (TG)n Simple_repeat Simple_repeat 1 59 0 191 410 51 0 chr6 104068697 104068814 -85210740 + MER5A DNA MER1_type 63 185 -4 324 113 88 62 chr6 104068923 104069003 -85210551 - L1ME4a LINE L1 -100 6021 5940 500 238 82 2 chr6 104069060 104069233 -85210321 - L1ME4a LINE L1 -307 5814 5615 4182 106 21 13 chr6 104069450 104070080 -85209474 - MER41B LTR ERV1 0 635 1 337 297 30 0 chr6 104070080 104070181 -85209373 + MER81 DNA DNA 10 113 -1 3411 162 98 8 chr6 104070727 104071382 -85208172 - MER72 LTR ERV1 0 722 9 373 303 287 7 chr6 104071848 104072155 -85207399 - L2 LINE L2 0 3313 2921 688 215 215 26 chr6 104072762 104072995 -85206559 - MLT1E LTR MaLR 0 626 311 478 242 50 45 chr6 104073053 104073251 -85206303 - HAL1 LINE L1 -1060 1447 1249 567 275 72 44 chr6 104073254 104073505 -85206049 - HAL1 LINE L1 -1485 1022 765 565 251 66 56 chr6 104073580 104073867 -85205687 - HAL1 LINE L1 -2113 394 105 180 111 0 0 chr6 104073875 104073902 -85205652 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1759 212 54 41 chr6 104074602 104075087 -85204467 + MLT1D LTR MaLR 12 502 -3 233 310 0 23 chr6 104075571 104075658 -85203896 - MLT1J2 LTR MaLR -332 118 34 235 235 210 12 chr6 104075688 104075769 -85203785 + MIR SINE MIR 86 182 -80 711 313 99 21 chr6 104076293 104076725 -85202829 - L3 LINE CR1 -145 1432 967 182 290 14 29 chr6 104078264 104078333 -85201221 + L2 LINE L2 3201 3268 -4 294 289 133 30 chr6 104078527 104078693 -85200861 - MIR SINE MIR -46 216 34 572 299 105 66 chr6 104079622 104080431 -85199123 + L1M4 LINE L1 3150 3989 -2157 1662 154 0 52 chr6 104080503 104080808 -85198746 + AluJb SINE Alu 9 297 -15 331 344 31 31 chr6 104081129 104081324 -85198230 - L1 LINE L1 -2421 3725 3531 2057 104 0 0 chr6 104081568 104081837 -85197717 - AluSx SINE Alu -11 301 33 483 223 29 0 chr6 104081903 104082006 -85197548 + MIR SINE MIR 31 136 -126 364 33 83 33 chr6 104082082 104082202 -85197352 + (TA)n Simple_repeat Simple_repeat 2 127 0 26 0 0 0 chr6 104132988 104133014 -85146540 + AT_rich Low_complexity Low_complexity 1 26 0 374 269 0 0 chr6 104134356 104134449 -85145105 + MLT2F LTR ERVL 1 93 -570 546 238 6 58 chr6 104134489 104134661 -85144893 + MLT1E3 LTR MaLR 60 222 -402 229 188 0 21 chr6 104134677 104134725 -85144829 + MLT2F LTR ERVL 242 288 -375 348 270 263 7 chr6 104137187 104137324 -85142230 + MER5A DNA MER1_type 11 182 -7 396 314 22 0 chr6 104137529 104137666 -85141888 - MIR3 SINE MIR -50 158 19 1246 208 42 78 chr6 104138035 104138419 -85141135 + MLT1A2 LTR MaLR 1 370 -4 230 171 0 0 chr6 104138499 104138534 -85141020 - L2 LINE L2 -18 3254 3220 671 261 25 20 chr6 104138770 104138969 -85140585 + MLT1H LTR MaLR 1 200 -349 352 235 69 0 chr6 104139080 104139182 -85140372 + MLT1H LTR MaLR 398 506 -43 423 272 114 0 chr6 104139281 104139439 -85140115 - MIR SINE MIR -16 246 71 1531 225 31 50 chr6 104139587 104139699 -85139855 + MLT1D LTR MaLR 5 118 -387 1722 226 73 29 chr6 104139699 104140181 -85139373 - MLT1D LTR MaLR 0 505 3 1531 225 31 50 chr6 104140181 104140525 -85139029 + MLT1D LTR MaLR 118 452 -53 282 349 103 43 chr6 104140559 104140791 -85138763 - MIR SINE MIR -6 256 11 412 324 9 0 chr6 104142514 104142646 -85136908 - MIR SINE MIR -62 146 12 240 365 25 14 chr6 104143083 104143254 -85136300 - MER5B DNA MER1_type -5 184 1 2007 293 90 27 chr6 104143269 104144002 -85135552 - L2 LINE L2 -2 3311 2464 1680 189 0 23 chr6 104144002 104144303 -85135251 + AluJo SINE Alu 1 294 -18 2007 293 90 27 chr6 104144303 104144737 -85134817 - L2 LINE L2 -849 2464 2059 1472 193 55 15 chr6 104146119 104146393 -85133161 + AluJo SINE Alu 1 285 -27 2302 132 31 3 chr6 104147086 104147472 -85132082 - MER57A LTR ERV1 -6 397 1 509 354 62 41 chr6 104147736 104148164 -85131390 + L2 LINE L2 2779 3216 -97 207 0 0 0 chr6 104148219 104148242 -85131312 + (CCA)n Simple_repeat Simple_repeat 1 23 0 514 272 44 13 chr6 104148242 104148400 -85131154 - MIR SINE MIR -11 251 89 1926 142 60 34 chr6 104148584 104148964 -85130590 - MLT1B LTR MaLR 0 390 1 4585 89 59 12 chr6 104149207 104149867 -85129687 - LTR8 LTR ERV1 0 691 1 3017 142 86 93 chr6 104150718 104151499 -85128055 - LTR48 LTR ERV1 -12 775 1 306 357 89 0 chr6 104151708 104151865 -85127689 + MER5A DNA MER1_type 19 189 0 6920 61 14 19 chr6 104152010 104153804 -85125750 - L1PA8 LINE L1 -10 6162 4389 3254 188 38 12 chr6 104154148 104154840 -85124714 - MER67C LTR ERV1 0 710 1 643 275 12 12 chr6 104156096 104156339 -85123215 + MIR SINE MIR 18 258 -4 2268 134 32 55 chr6 104156719 104157158 -85122396 - MER39 LTR ERV1 -38 669 241 1895 222 46 96 chr6 104157172 104157739 -85121815 - LTR8 LTR ERV1 0 691 98 231 36 0 0 chr6 104157739 104157767 -85121787 + (TATG)n Simple_repeat Simple_repeat 2 29 0 1577 182 7 18 chr6 104157767 104158042 -85121512 - AluJb SINE Alu -28 284 13 1895 222 46 96 chr6 104158042 104158184 -85121370 - LTR8 LTR ERV1 -591 100 16 1147 161 23 37 chr6 104158224 104158441 -85121113 - MER39 LTR ERV1 -493 214 1 3926 104 156 67 chr6 104158456 104159215 -85120339 - LTR12 LTR ERV1 0 826 1 739 235 49 46 chr6 104159274 104159580 -85119974 - pTR5 LTR ERV1 -1391 1047 741 22 56 0 0 chr6 104159586 104159622 -85119932 + AT_rich Low_complexity Low_complexity 1 36 0 2366 67 0 0 chr6 104161121 104161438 -85118116 + AluY SINE Alu 1 317 0 24 67 0 0 chr6 104162077 104162122 -85117432 + AT_rich Low_complexity Low_complexity 1 45 0 2016 134 3 13 chr6 104163288 104163595 -85115959 + AluSx SINE Alu 1 304 -8 346 314 93 29 chr6 104163899 104164071 -85115483 + MER5A DNA MER1_type 1 183 -6 1190 285 178 12 chr6 104164272 104164767 -85114787 + MLT1G1 LTR MaLR 9 585 -10 1914 129 51 0 chr6 104164802 104165096 -85114458 - AluSx SINE Alu -3 309 1 234 325 66 24 chr6 104165537 104165703 -85113851 - L2 LINE L2 -44 3269 3097 333 230 70 20 chr6 104166501 104166601 -85112953 - MIR SINE MIR -44 218 114 243 0 0 0 chr6 104167772 104167799 -85111755 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr6 104168083 104168113 -85111441 + AT_rich Low_complexity Low_complexity 1 30 0 213 250 308 12 chr6 104168335 104168507 -85111047 - MIR SINE MIR -1 261 39 21 0 0 0 chr6 104168550 104168571 -85110983 + AT_rich Low_complexity Low_complexity 1 21 0 201 232 21 21 chr6 104169251 104169346 -85110208 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 320 364 45 32 chr6 104169495 104169715 -85109839 + MIR SINE MIR 28 250 -12 26 0 0 0 chr6 104170856 104170882 -85108672 + AT_rich Low_complexity Low_complexity 1 26 0 206 375 47 23 chr6 104171732 104171860 -85107694 + L2 LINE L2 3137 3267 -5 437 263 125 20 chr6 104172245 104172397 -85107157 + MER58C DNA MER1_type 27 194 -21 315 301 28 17 chr6 104173568 104173716 -85105838 + MIR SINE MIR 3 153 -66 283 243 14 14 chr6 104173748 104173822 -85105732 - L2 LINE L2 -15 3257 3184 2345 78 3 7 chr6 104174299 104174607 -85104947 + AluY SINE Alu 1 307 -4 181 337 45 73 chr6 104174997 104175021 -85104533 + L2 LINE L2 2688 2711 -603 1210 245 24 51 chr6 104175021 104175393 -85104161 + MLT1A1 LTR MaLR 3 364 -1 181 337 45 73 chr6 104175393 104175546 -85104008 + L2 LINE L2 2711 2860 -454 194 288 169 0 chr6 104175848 104175907 -85103647 + L2 LINE L2 3234 3302 -11 230 306 28 65 chr6 104176512 104176620 -85102934 - L2 LINE L2 -1 3312 3209 243 284 11 53 chr6 104176747 104176842 -85102712 + L3 LINE CR1 75 165 -1412 206 394 0 0 chr6 104176979 104177045 -85102509 + L3 LINE CR1 318 383 -1194 203 305 137 0 chr6 104177063 104177158 -85102396 + L3 LINE CR1 541 648 -929 386 351 174 20 chr6 104177260 104177667 -85101887 + L3 LINE CR1 660 1129 -448 2562 235 53 44 chr6 104178738 104179494 -85100060 - MER21B LTR ERV1 -81 782 20 22 0 0 0 chr6 104179954 104179976 -85099578 + AT_rich Low_complexity Low_complexity 1 22 0 230 352 176 9 chr6 104179989 104180199 -85099355 - MIR SINE MIR 0 262 18 31 26 0 0 chr6 104181278 104181316 -85098238 + AT_rich Low_complexity Low_complexity 1 38 0 225 0 0 0 chr6 104182299 104182324 -85097230 + (TG)n Simple_repeat Simple_repeat 1 25 0 237 282 54 59 chr6 104183107 104183287 -85096267 - MIR SINE MIR -50 212 38 950 215 43 19 chr6 104186161 104186370 -85093184 - MER20 DNA MER1_type -5 214 1 369 0 0 0 chr6 104186605 104186646 -85092908 + (TG)n Simple_repeat Simple_repeat 2 42 0 260 173 0 39 chr6 104186995 104187047 -85092507 - L2 LINE L2 0 3313 3264 182 118 29 0 chr6 104187061 104187095 -85092459 + CT-rich Low_complexity Low_complexity 2 36 0 1086 173 118 47 chr6 104187739 104187855 -85091699 + AluJo SINE Alu 1 107 -205 215 61 30 0 chr6 104187855 104187888 -85091666 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1086 173 118 47 chr6 104187888 104188026 -85091528 + AluJo SINE Alu 107 273 -39 759 214 149 53 chr6 104188920 104189201 -85090353 - MER97b DNA MER1_type? -745 308 1 209 218 211 68 chr6 104189221 104189354 -85090200 + MIR SINE MIR 108 259 -3 270 81 0 0 chr6 104189796 104189833 -85089721 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 6628 85 0 0 chr6 104189833 104190968 -85088586 - L1PA8 LINE L1 -17 6155 5024 231 114 0 0 chr6 104191018 104191053 -85088501 + (CA)n Simple_repeat Simple_repeat 2 36 0 320 94 19 0 chr6 104191278 104191331 -85088223 + (TG)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr6 104191999 104192020 -85087534 + AT_rich Low_complexity Low_complexity 1 21 0 686 107 0 0 chr6 104192072 104192175 -85087379 - AluY SINE Alu -16 295 193 1796 175 38 48 chr6 104192222 104192482 -85087072 - MLT1B LTR MaLR 0 390 134 1514 94 26 43 chr6 104192482 104192716 -85086838 - MER30 DNA MER1_type 0 230 1 1796 175 38 48 chr6 104192716 104192849 -85086705 - MLT1B LTR MaLR -256 134 1 23 0 0 0 chr6 104192877 104192900 -85086654 + AT_rich Low_complexity Low_complexity 1 23 0 8012 75 9 9 chr6 104194175 104195290 -85084264 - L1P LINE L1 -2109 4037 2920 6213 87 2 32 chr6 104195290 104196241 -85083313 + L1PA7 LINE L1 5232 6154 0 1651 229 52 16 chr6 104196789 104197235 -85082319 + LTR40b LTR ERVL 1 462 0 23 68 0 0 chr6 104198653 104198697 -85080857 + AT_rich Low_complexity Low_complexity 1 44 0 1381 148 20 0 chr6 104199452 104199696 -85079858 + L1PA16 LINE L1 5909 6157 -9 425 267 91 27 chr6 104200304 104200491 -85079063 + L1M4 LINE L1 2979 3177 -2969 351 312 101 35 chr6 104200752 104201239 -85078315 + L1M4 LINE L1 3521 4039 -2107 887 268 28 97 chr6 104201318 104201740 -85077814 + LTR40c LTR ERVL 44 436 -29 464 257 37 135 chr6 104201856 104202456 -85077098 + L1M4 LINE L1 4109 4649 -1497 270 326 67 26 chr6 104202604 104202874 -85076680 + L1M4 LINE L1 4878 5158 -988 344 299 16 18 chr6 104202938 104203117 -85076437 + L1P5 LINE L1 5299 5484 -672 368 316 91 32 chr6 104203131 104203384 -85076170 - MLT1L LTR MaLR -2 613 346 274 243 14 14 chr6 104203484 104203554 -85076000 - MLT1J LTR MaLR -333 178 109 263 282 120 0 chr6 104203886 104204003 -85075551 + MIR SINE MIR 16 146 -62 14631 147 14 6 chr6 104204741 104205565 -85073989 + Tigger1 DNA MER2_type 1 817 -1601 1992 145 40 0 chr6 104205565 104205862 -85073692 + AluSx SINE Alu 2 310 -2 14631 147 14 6 chr6 104205862 104207436 -85072118 + Tigger1 DNA MER2_type 817 2418 0 2308 87 7 23 chr6 104209471 104209781 -85069773 - AluSq SINE Alu -5 308 4 383 278 189 22 chr6 104210513 104210693 -85068861 - MIR SINE MIR -13 249 40 204 97 0 0 chr6 104210926 104210957 -85068597 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 275 333 43 89 chr6 104211137 104211419 -85068135 + L2 LINE L2 2550 2818 -496 328 143 57 29 chr6 104211906 104211976 -85067578 + L1P5 LINE L1 5721 5792 -359 329 311 0 0 chr6 104211980 104212070 -85067484 - L1MC4 LINE L1 -1339 6703 6614 715 99 0 0 chr6 104212073 104212174 -85067380 + L1PB1 LINE L1 5782 5882 -269 1393 50 0 11 chr6 104212365 104212546 -85067008 + L1PA5 LINE L1 5976 6154 0 2101 180 53 2 chr6 104214007 104214402 -85065152 - MSTB LTR MaLR -11 415 1 208 260 14 14 chr6 104214662 104214735 -85064819 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 289 233 0 0 chr6 104215704 104215764 -85063790 - MER5A DNA MER1_type -6 183 124 25 31 0 0 chr6 104216047 104216079 -85063475 + AT_rich Low_complexity Low_complexity 1 32 0 311 292 67 0 chr6 104216379 104216468 -85063086 + L2 LINE L2 3177 3271 -1 1777 121 9 96 chr6 104218217 104218327 -85061227 + MLT2A2 LTR ERVL 1 119 -334 2107 117 0 0 chr6 104218327 104218637 -85060917 + AluSx SINE Alu 1 310 0 1777 121 9 96 chr6 104218637 104218857 -85060697 + MLT2A2 LTR ERVL 119 303 -150 9481 100 23 4 chr6 104218857 104220168 -85059386 + HERVL-A2 LTR ERVL 4319 5654 0 1886 182 32 41 chr6 104220168 104220671 -85058883 + MLT2A2 LTR ERVL 1 491 -63 2013 101 3 35 chr6 104220671 104220986 -85058568 + AluSx SINE Alu 3 308 0 1886 182 32 41 chr6 104220986 104221043 -85058511 + MLT2A2 LTR ERVL 491 547 -7 707 287 60 8 chr6 104221635 104221886 -85057668 - MLT1J1 LTR MaLR -177 269 6 467 30 0 69 chr6 104223317 104223418 -85056136 + (TA)n Simple_repeat Simple_repeat 1 94 0 467 338 22 35 chr6 104223875 104224103 -85055451 + L2 LINE L2 2601 2825 -489 11834 113 12 8 chr6 104224130 104226718 -85052836 - L1PA8A LINE L1 -1 6130 3533 2025 148 9 32 chr6 104226719 104227057 -85052497 + THE1C LTR MaLR 46 375 0 6588 88 2 0 chr6 104227295 104228538 -85051016 - L1PA7 LINE L1 -3 6466 5225 12950 104 22 13 chr6 104228552 104230566 -85048988 - L1PA7 LINE L1 -1407 5054 3023 3429 120 43 0 chr6 104230562 104231045 -85048509 - L1PA7 LINE L1 -5950 511 8 * 213 346 109 51 chr6 104231049 104231361 -85048193 - L2 LINE L2 -533 2781 2452 662 324 49 34 chr6 104232667 104233078 -85046476 + LTR16A LTR ERVL 1 417 -33 24 0 0 0 chr6 104234247 104234271 -85045283 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 104234565 104234586 -85044968 + AT_rich Low_complexity Low_complexity 1 21 0 651 196 16 79 chr6 104236247 104236436 -85043118 - MER3 DNA MER1_type -24 185 9 212 194 42 14 chr6 104236479 104236551 -85043003 + (TTATA)n Simple_repeat Simple_repeat 5 78 0 31 26 0 0 chr6 104237358 104237396 -85042158 + AT_rich Low_complexity Low_complexity 1 38 0 542 320 17 6 chr6 104237518 104237693 -85041861 + MER5B DNA MER1_type 2 178 0 27 49 0 0 chr6 104237814 104237855 -85041699 + AT_rich Low_complexity Low_complexity 1 41 0 574 323 47 0 chr6 104238431 104238623 -85040931 - MIR SINE MIR -52 210 10 218 327 93 19 chr6 104239255 104239362 -85040192 + L2 LINE L2 2262 2376 -938 221 309 91 9 chr6 104239891 104240001 -85039553 + L2 LINE L2 3023 3141 -172 240 318 82 0 chr6 104240051 104240136 -85039418 + L2 LINE L2 3177 3268 -4 22 35 0 0 chr6 104240789 104240818 -85038736 + AT_rich Low_complexity Low_complexity 1 29 0 1752 187 0 22 chr6 104240878 104241193 -85038361 + AluJo SINE Alu 1 308 -4 411 297 86 72 chr6 104242081 104242525 -85037029 - ERVL LTR ERVL -507 5257 4808 319 301 106 16 chr6 104242616 104242739 -85036815 - L2 LINE L2 0 3272 3139 1045 191 5 0 chr6 104243093 104243292 -85036262 + L1PB1 LINE L1 1 200 -6663 7711 118 150 10 chr6 104243292 104244633 -85034921 + L1PB1 LINE L1 634 2161 -4702 6338 143 8 2 chr6 104244643 104246177 -85033377 + L1PB1 LINE L1 5329 6867 0 32 0 0 0 chr6 104246217 104246249 -85033305 + AT_rich Low_complexity Low_complexity 1 32 0 339 25 0 0 chr6 104246672 104246712 -85032842 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 1609 153 108 0 chr6 104247124 104247392 -85032162 - AluSx SINE Alu -15 297 1 447 343 109 40 chr6 104247392 104248060 -85031494 - L2 LINE L2 -2084 1230 517 198 333 82 41 chr6 104248531 104248726 -85030828 + MIR SINE MIR 34 236 -26 243 358 62 0 chr6 104250308 104250424 -85029130 + L2 LINE L2 3115 3236 -36 236 297 14 0 chr6 104250424 104250498 -85029056 - MIR SINE MIR -109 153 79 206 400 30 0 chr6 104250608 104250708 -85028846 - L2 LINE L2 -1 3271 3169 2210 143 19 14 chr6 104252166 104252529 -85027025 + MER47A DNA MER2_type 2 366 0 24 67 0 0 chr6 104252617 104252662 -85026892 + AT_rich Low_complexity Low_complexity 1 45 0 258 389 8 15 chr6 104252753 104252884 -85026670 - MIR SINE MIR -130 132 3 399 347 7 13 chr6 104253026 104253176 -85026378 - MIR SINE MIR -106 156 8 559 256 19 43 chr6 104253278 104253489 -85026065 - L1ME LINE L1 -602 5568 5363 4614 219 35 12 chr6 104254143 104254278 -85025276 - L1MD1 LINE L1 0 6242 6112 2119 160 6 9 chr6 104254278 104254616 -85024938 + MER1B DNA MER1_type 1 337 0 4614 219 35 12 chr6 104254616 104256294 -85023260 - L1MD1 LINE L1 -130 6112 4383 402 259 133 77 chr6 104256302 104256784 -85022770 - L1ME LINE L1 -1487 4659 4151 13172 34 1 1 chr6 104256825 104259177 -85020377 - L1PA5 LINE L1 -2 6152 3799 1591 143 0 0 chr6 104259307 104259558 -85019996 - L1PA13 LINE L1 -1 6162 5912 8057 139 32 12 chr6 104259573 104262079 -85017475 + L1PBa LINE L1 6 2782 -4081 5822 217 19 1 chr6 104262085 104263407 -85016147 + L1 LINE L1 2827 4171 -2691 3575 117 18 0 chr6 104263406 104263964 -85015590 - L1PA13 LINE L1 -243 5925 5358 * 6481 193 61 9 chr6 104264034 104264168 -85015386 - L1MA9 LINE L1 0 7333 7207 2381 121 5 50 chr6 104264168 104264474 -85015080 + THE1B LTR MaLR 1 288 -76 2250 116 0 3 chr6 104264474 104264785 -85014769 + AluSq SINE Alu 1 310 -3 2381 121 5 50 chr6 104264785 104264859 -85014695 + THE1B LTR MaLR 288 364 0 6481 193 61 9 chr6 104264859 104267192 -85012362 - L1MA9 LINE L1 -126 7207 4721 307 152 0 0 chr6 104267196 104267242 -85012312 - MER21B LTR ERV1 -817 46 1 981 299 27 25 chr6 104267245 104267720 -85011834 - L1MA9 LINE L1 -4961 2207 1732 433 277 43 29 chr6 104268204 104268533 -85011021 - L1MEd LINE L1 -4875 1244 975 1253 149 70 5 chr6 104268614 104268828 -85010726 - MER30 DNA MER1_type 0 230 3 550 258 37 37 chr6 104268830 104269020 -85010534 + MIR SINE MIR 72 261 -1 242 352 56 0 chr6 104269542 104269650 -85009904 - L1MEd LINE L1 -5462 657 544 1353 229 104 37 chr6 104269730 104270192 -85009362 + MLT1D LTR MaLR 7 499 -6 273 57 0 0 chr6 104271866 104271901 -85007653 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr6 104272179 104272207 -85007347 + AT_rich Low_complexity Low_complexity 1 28 0 5603 189 24 14 chr6 104274132 104274527 -85005027 + L1PA16 LINE L1 3998 4388 -1778 261 0 0 0 chr6 104274527 104274556 -85004998 + (CA)n Simple_repeat Simple_repeat 2 30 0 5603 189 24 14 chr6 104274556 104276182 -85003372 + L1PA16 LINE L1 4388 5997 -169 1986 174 36 22 chr6 104276182 104276539 -85003015 + THE1B LTR MaLR 1 362 -2 11628 97 8 0 chr6 104276541 104278109 -85001445 + THE1B-int LTR MaLR 1 1580 0 2224 144 28 19 chr6 104278109 104278470 -85001084 + THE1B LTR MaLR 1 364 0 5603 189 24 14 chr6 104278470 104278598 -85000956 + L1PA16 LINE L1 5996 6166 0 3148 240 43 14 chr6 104278887 104279008 -85000546 - L1MC4a LINE L1 0 7808 7692 7655 25 0 0 chr6 104279008 104279986 -84999568 + L1PA4 LINE L1 5179 6155 0 3148 240 43 14 chr6 104279986 104280774 -84998780 - L1MC4a LINE L1 -116 7692 6873 584 271 38 17 chr6 104280773 104281009 -84998545 - L1M4 LINE L1 -2467 3679 3439 * 976 92 7 59 chr6 104281020 104281172 -84998382 - AluY SINE Alu -132 179 36 1860 240 69 13 chr6 104281173 104281865 -84997689 - L1M4 LINE L1 -2972 3174 2444 26 50 0 0 chr6 104281921 104281961 -84997593 + AT_rich Low_complexity Low_complexity 1 40 0 1531 206 21 41 chr6 104282237 104282576 -84996978 + MLT1E1 LTR MaLR 3 334 -320 304 314 27 53 chr6 104282603 104282791 -84996763 + ERVL LTR ERVL 1246 1428 -4336 1986 97 19 4 chr6 104283207 104283475 -84996079 + AluSg SINE Alu 24 295 -15 23 0 0 0 chr6 104283503 104283526 -84996028 + AT_rich Low_complexity Low_complexity 1 23 0 4582 228 68 23 chr6 104283683 104285308 -84994246 + L1MD1 LINE L1 984 2677 -3863 3908 211 75 14 chr6 104285300 104286444 -84993110 + L1MD1 LINE L1 5433 6636 0 * 2224 79 4 0 chr6 104287612 104287935 -84991619 - AluY SINE Alu 0 324 1 1567 208 10 7 chr6 104288158 104288171 -84991383 - AluJb SINE Alu -17 295 284 237 83 0 0 chr6 104288171 104288207 -84991347 + (TG)n Simple_repeat Simple_repeat 1 36 0 1567 208 10 7 chr6 104288207 104288487 -84991067 - AluJb SINE Alu -28 284 1 2037 132 10 3 chr6 104288691 104288994 -84990560 + AluSx SINE Alu 1 305 -7 589 290 61 13 chr6 104290508 104290736 -84988818 - MIR SINE MIR -11 251 17 345 290 161 13 chr6 104290758 104290913 -84988641 - MIR SINE MIR -1 261 84 26 0 0 0 chr6 104291066 104291092 -84988462 + AT_rich Low_complexity Low_complexity 1 26 0 201 39 0 0 chr6 104291131 104291157 -84988397 + (CA)n Simple_repeat Simple_repeat 2 27 0 249 196 0 0 chr6 104291879 104291930 -84987624 + CT-rich Low_complexity Low_complexity 2 52 0 1568 158 91 3 chr6 104291932 104292091 -84987463 - AluSx SINE Alu -1 311 167 387 0 0 0 chr6 104292091 104292134 -84987420 + (TG)n Simple_repeat Simple_repeat 2 44 0 1568 158 91 3 chr6 104292134 104292259 -84987295 - AluSx SINE Alu -145 167 2 895 109 0 61 chr6 104292285 104292450 -84987104 - L1PA11 LINE L1 -1 6173 6019 26 0 0 0 chr6 104292768 104292794 -84986760 + AT_rich Low_complexity Low_complexity 1 26 0 616 13 0 0 chr6 104392954 104393032 -84886522 - AluY SINE Alu -232 78 1 302 270 22 0 chr6 104394398 104394487 -84885067 + L2 LINE L2 3223 3313 0 24 0 0 0 chr6 104395891 104395915 -84883639 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr6 104396330 104396351 -84883203 + (CCA)n Simple_repeat Simple_repeat 3 23 0 251 343 50 70 chr6 104397400 104397741 -84881813 + L1M3d LINE L1 456 789 -5514 1846 245 65 26 chr6 104397829 104398637 -84880917 + L1M3d LINE L1 797 1784 -4519 523 319 16 16 chr6 104398761 104398946 -84880608 + MIR SINE MIR 19 203 -59 306 0 0 0 chr6 104400974 104401008 -84878546 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr6 104403707 104403729 -84875825 + AT_rich Low_complexity Low_complexity 1 22 0 1996 118 7 4 chr6 104403737 104404016 -84875538 - AluSg SINE Alu -30 280 1 504 324 80 0 chr6 104404180 104404418 -84875136 - LTR16B LTR ERVL 0 464 208 333 250 26 0 chr6 104404424 104404500 -84875054 - MER69 DNA AcHobo -771 455 378 1309 261 112 74 chr6 104404579 104404647 -84874907 + MLT1E LTR MaLR 1 65 -528 856 210 6 0 chr6 104404647 104404804 -84874750 + FRAM SINE Alu 1 158 -8 369 0 0 0 chr6 104404805 104404846 -84874708 + (CA)n Simple_repeat Simple_repeat 2 42 0 1309 261 112 74 chr6 104404846 104405346 -84874208 + MLT1E LTR MaLR 64 593 0 183 80 0 0 chr6 104406858 104406883 -84872671 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 189 229 0 0 chr6 104407085 104407133 -84872421 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 1834 232 114 7 chr6 104408666 104409131 -84870423 - MLT1E2 LTR MaLR 0 626 112 21 0 0 0 chr6 104409266 104409287 -84870267 + AT_rich Low_complexity Low_complexity 1 21 0 2524 44 0 7 chr6 104409929 104410223 -84869331 - AluY SINE Alu -18 293 2 2242 103 10 0 chr6 104410609 104410919 -84868635 - AluSp SINE Alu 0 313 1 1003 311 38 57 chr6 104410924 104411377 -84868177 + LTR16C LTR ERVL 47 490 -1 22 0 0 0 chr6 104413472 104413494 -84866060 + AT_rich Low_complexity Low_complexity 1 22 0 2222 202 62 52 chr6 104414944 104415418 -84864136 + MLT2B3 LTR ERVL 3 485 -69 609 14 0 0 chr6 104415418 104415488 -84864066 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 2222 202 62 52 chr6 104415488 104415557 -84863997 + MLT2B3 LTR ERVL 485 552 -2 354 169 0 0 chr6 104415570 104415635 -84863919 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 304 197 70 0 chr6 104415636 104415707 -84863847 + L1MCa LINE L1 2006 2081 -4345 1653 186 4 0 chr6 104415713 104415982 -84863572 - AluJb SINE Alu -32 280 11 254 297 108 94 chr6 104416087 104416299 -84863255 - L2 LINE L2 -16 3297 3083 358 367 103 19 chr6 104416336 104416753 -84862801 + L2 LINE L2 827 1278 -2036 626 346 134 30 chr6 104417187 104417573 -84861981 + L2 LINE L2 2000 2344 -970 2755 171 16 57 chr6 104417573 104417627 -84861927 - MLT2B3 LTR ERVL 0 554 499 503 15 0 15 chr6 104417627 104417692 -84861862 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 2755 171 16 57 chr6 104417692 104418002 -84861552 - MLT2B3 LTR ERVL -55 499 220 1912 161 33 0 chr6 104418002 104418306 -84861248 - 7SLRNA srpRNA srpRNA -6 314 1 2755 171 16 57 chr6 104418306 104418518 -84861036 - MLT2B3 LTR ERVL -334 220 1 626 346 134 30 chr6 104418518 104418957 -84860597 + L2 LINE L2 2344 2911 -403 251 244 0 39 chr6 104419036 104419114 -84860440 + MER94 DNA DNA 32 106 -28 672 267 17 30 chr6 104419182 104419458 -84860096 + MER20B DNA MER1_type 410 683 -100 1568 205 70 3 chr6 104419458 104419800 -84859754 + MLT1A1 LTR MaLR 1 365 0 672 267 17 30 chr6 104419800 104419819 -84859735 + MER20B DNA MER1_type 683 701 -82 647 332 18 5 chr6 104420287 104420504 -84859050 + MER115 DNA AcHobo 19 238 -455 981 303 36 31 chr6 104420534 104420890 -84858664 + MER115 DNA AcHobo 334 691 -2 465 254 0 0 chr6 104420979 104421089 -84858465 + LTR33 LTR ERVL 402 511 -10 526 330 61 27 chr6 104422184 104422481 -84857073 - L2 LINE L2 -1 3312 3006 2293 92 7 0 chr6 104423625 104423928 -84855626 + AluSx SINE Alu 1 305 -7 254 191 0 15 chr6 104424240 104424308 -84855246 + (TA)n Simple_repeat Simple_repeat 2 68 0 2393 70 0 13 chr6 104424385 104424684 -84854870 + AluY SINE Alu 1 295 -16 398 208 28 97 chr6 104424807 104424842 -84854712 + MIR3 SINE MIR 47 83 -125 3357 138 32 17 chr6 104424842 104425438 -84854116 + L1MA3 LINE L1 5701 6305 0 398 208 28 97 chr6 104425438 104425546 -84854008 + MIR3 SINE MIR 83 180 -28 1162 216 48 16 chr6 104425660 104425993 -84853561 - MLT1B LTR MaLR 0 390 1 24 53 0 0 chr6 104426246 104426284 -84853270 + AT_rich Low_complexity Low_complexity 1 38 0 675 337 23 27 chr6 104427348 104427609 -84851945 + MIR SINE MIR 3 262 0 302 258 45 0 chr6 104428508 104428597 -84850957 + MLT1L LTR MaLR 477 569 -46 245 245 0 0 chr6 104428850 104428899 -84850655 + GA-rich Low_complexity Low_complexity 2 50 0 210 37 0 0 chr6 104429219 104429246 -84850308 + (TA)n Simple_repeat Simple_repeat 1 27 0 6983 86 10 0 chr6 104429375 104430379 -84849175 + L1PA7 LINE L1 2399 3412 -2734 14484 75 7 0 chr6 104431195 104433921 -84845633 + L1PA7 LINE L1 3419 6153 -1 35 71 0 0 chr6 104433966 104434036 -84845518 + AT_rich Low_complexity Low_complexity 1 70 0 1709 144 11 0 chr6 104434749 104435012 -84844542 - AluJo SINE Alu -18 294 29 21 0 0 0 chr6 104435744 104435765 -84843789 + AT_rich Low_complexity Low_complexity 1 21 0 411 300 0 0 chr6 104438091 104438212 -84841342 + MIR3 SINE MIR 46 167 -41 242 280 268 13 chr6 104438678 104438835 -84840719 - MIR SINE MIR -36 226 30 200 119 0 24 chr6 104440433 104440475 -84839079 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 555 126 0 0 chr6 104440475 104440562 -84838992 + (TTC)n Simple_repeat Simple_repeat 2 88 0 649 133 42 7 chr6 104440566 104440709 -84838845 + CT-rich Low_complexity Low_complexity 1 148 0 871 199 13 0 chr6 104440712 104440868 -84838686 - AluJb SINE Alu -20 292 135 2240 117 0 3 chr6 104442514 104442822 -84836732 + AluSx SINE Alu 1 307 -5 314 190 37 7 chr6 104445397 104445675 -84833879 + (TA)n Simple_repeat Simple_repeat 1 286 0 207 69 0 0 chr6 104445675 104445704 -84833850 + (GA)n Simple_repeat Simple_repeat 2 30 0 520 256 22 7 chr6 104445705 104445842 -84833712 + L1MDa LINE L1 121 259 -6281 * 998 202 36 12 chr6 104445839 104446087 -84833467 + L1MDa LINE L1 2154 2407 -4133 243 100 0 0 chr6 104446523 104446563 -84832991 - L1MA10 LINE L1 -18 6316 6277 262 208 0 0 chr6 104446567 104446620 -84832934 + L1MD2 LINE L1 5894 5946 -413 553 247 20 13 chr6 104446694 104446844 -84832710 + L1MD2 LINE L1 6194 6344 -15 902 266 11 28 chr6 104446860 104447142 -84832412 + L1ME1 LINE L1 5884 6160 -6 1162 257 30 24 chr6 104448473 104448812 -84830742 - MLT1A2 LTR MaLR -1 373 33 22 0 0 0 chr6 104448867 104448889 -84830665 + AT_rich Low_complexity Low_complexity 1 22 0 1361 185 48 60 chr6 104449116 104449430 -84830124 - AluJo SINE Alu -2 310 1 358 297 138 18 chr6 104450667 104450943 -84828611 - L1ME4a LINE L1 -244 5877 5569 898 269 76 4 chr6 104452117 104452413 -84827141 + MLT2B1 LTR ERVL 1 310 -205 5363 140 30 5 chr6 104452428 104453449 -84826105 - L1PA16 LINE L1 -9 6157 5096 189 0 0 0 chr6 104453449 104453470 -84826084 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5363 140 30 5 chr6 104453470 104453928 -84825626 - L1PA16 LINE L1 -1070 5096 4651 992 286 69 56 chr6 104454046 104454249 -84825305 + L2 LINE L2 2535 2734 -579 977 215 157 66 chr6 104454249 104454612 -84824942 + MSTD LTR MaLR 1 396 0 992 286 69 56 chr6 104454612 104455190 -84824364 + L2 LINE L2 2734 3311 -2 1393 227 43 0 chr6 104455968 104456245 -84823309 + AluJo SINE Alu 1 289 -23 267 316 53 64 chr6 104456452 104456623 -84822931 + L2 LINE L2 2930 3098 -174 24 0 0 0 chr6 104457126 104457150 -84822404 + AT_rich Low_complexity Low_complexity 1 24 0 13869 153 20 4 chr6 104457908 104460286 -84819268 + Tigger1 DNA MER2_type 3 2418 0 6991 142 26 7 chr6 104460367 104461573 -84817981 - Tigger3b DNA MER2_type -1 1230 1 482 247 185 22 chr6 104461634 104461812 -84817742 + MIR SINE MIR 4 210 -52 2357 74 7 3 chr6 104463853 104464151 -84815403 + AluY SINE Alu 1 299 -12 231 263 0 38 chr6 104465744 104465824 -84813730 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 3023 221 116 10 chr6 104465888 104466597 -84812957 + Zaphod DNA AcHobo 1 826 -3205 2194 89 14 0 chr6 104466597 104466888 -84812666 - AluSg SINE Alu -5 305 11 3023 221 116 10 chr6 104466888 104467073 -84812481 + Zaphod DNA AcHobo 826 990 -3041 272 188 75 0 chr6 104467071 104467151 -84812403 + Zaphod DNA AcHobo 3595 3680 -351 * 326 229 180 8 chr6 104467163 104467285 -84812269 + Zaphod DNA AcHobo 3833 3975 -56 21 71 0 0 chr6 104469064 104469106 -84810448 + AT_rich Low_complexity Low_complexity 1 42 0 772 160 0 12 chr6 104469366 104469535 -84810019 + GA-rich Low_complexity Low_complexity 3 169 0 30 59 0 0 chr6 104469976 104470027 -84809527 + AT_rich Low_complexity Low_complexity 1 51 0 258 252 9 27 chr6 104470427 104470538 -84809016 + (TA)n Simple_repeat Simple_repeat 1 109 0 23 0 0 0 chr6 104470661 104470684 -84808870 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr6 104471973 104472020 -84807534 + AT_rich Low_complexity Low_complexity 1 47 0 300 320 10 0 chr6 104472020 104472123 -84807431 + L1MC4 LINE L1 7327 7430 -612 487 256 141 51 chr6 104472148 104472538 -84807016 + L1MC5 LINE L1 7311 7735 -226 1003 203 43 117 chr6 104472544 104472938 -84806616 + MLT1A1 LTR MaLR 1 365 0 285 98 0 0 chr6 104472972 104473013 -84806541 + (TG)n Simple_repeat Simple_repeat 1 41 0 222 174 0 0 chr6 104473147 104473193 -84806361 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 239 250 0 18 chr6 104473763 104473819 -84805735 - MIR SINE MIR -8 254 200 1575 144 0 20 chr6 104473991 104474265 -84805289 + AluSx SINE Alu 37 305 0 1345 304 71 14 chr6 104474524 104475102 -84804452 + MLT1L LTR MaLR 1 611 -4 326 217 0 0 chr6 104476464 104476524 -84803030 + L2 LINE L2 3210 3269 -3 182 114 0 29 chr6 104478768 104478803 -84800751 + (GAA)n Simple_repeat Simple_repeat 2 35 0 460 360 33 14 chr6 104480498 104480709 -84798845 - MLT1J2 LTR MaLR -213 237 23 847 196 6 0 chr6 104481091 104481249 -84798305 - MLT-int LTR MaLR -1572 163 5 2118 203 62 26 chr6 104481253 104481755 -84797799 - MLT2B1 LTR ERVL 0 520 1 195 374 88 14 chr6 104481811 104481958 -84797596 - L2 LINE L2 -2470 844 687 2064 120 0 3 chr6 104482355 104482655 -84796899 + AluSx SINE Alu 1 299 -13 203 139 47 0 chr6 104483257 104483300 -84796254 + GA-rich Low_complexity Low_complexity 2 46 0 219 162 0 0 chr6 104483514 104483551 -84796003 + L2 LINE L2 3277 3313 0 2789 231 38 19 chr6 104485786 104486421 -84793133 - MER82 DNA MER2_type 0 653 7 22 0 0 0 chr6 104486427 104486449 -84793105 + AT_rich Low_complexity Low_complexity 1 22 0 1536 173 0 0 chr6 104486740 104486988 -84792566 + AluJb SINE Alu 62 309 -3 3331 178 47 10 chr6 104488724 104489407 -84790147 - L1MB3 LINE L1 -2 6181 5470 207 0 0 0 chr6 104489407 104489430 -84790124 + (TTA)n Simple_repeat Simple_repeat 2 24 0 3331 178 47 10 chr6 104489430 104489456 -84790098 - L1MB3 LINE L1 -713 5470 5446 255 361 146 15 chr6 104489457 104489587 -84789967 - MIR3 SINE MIR -38 170 24 417 257 114 29 chr6 104490092 104490232 -84789322 - L2 LINE L2 0 3313 3162 526 260 51 45 chr6 104490261 104490438 -84789116 + Charlie8 DNA MER1_type 1 178 -2239 198 336 37 37 chr6 104490453 104490560 -84788994 - L2 LINE L2 -253 3060 2954 240 326 136 54 chr6 104492443 104492622 -84786932 - L2 LINE L2 -6 3307 3144 2011 128 24 7 chr6 104492622 104492920 -84786634 + AluSx SINE Alu 1 303 -9 240 326 136 54 chr6 104492920 104493250 -84786304 - L2 LINE L2 -169 3144 2717 197 333 151 41 chr6 104493659 104493716 -84785838 - MIR SINE MIR 0 262 213 2125 133 33 28 chr6 104493716 104494078 -84785476 - THE1B LTR MaLR 0 364 1 197 333 151 41 chr6 104494078 104494239 -84785315 - MIR SINE MIR -49 213 20 22 35 0 0 chr6 104494427 104494456 -84785098 + AT_rich Low_complexity Low_complexity 1 29 0 2402 90 3 0 chr6 104494865 104495177 -84784377 + AluSp SINE Alu 1 313 0 214 275 113 38 chr6 104495484 104495564 -84783990 + MIR SINE MIR 20 105 -157 210 219 0 0 chr6 104495629 104495670 -84783884 + L2 LINE L2 3261 3301 -12 180 339 0 0 chr6 104495768 104495833 -84783721 + MIR SINE MIR 71 135 -73 319 130 0 0 chr6 104497042 104497096 -84782458 - MER116 DNA Mariner -21 59 6 225 350 48 27 chr6 104498269 104498455 -84781099 - LTR16A1 LTR ERVL -257 200 11 288 0 0 0 chr6 104498825 104498857 -84780697 + (GA)n Simple_repeat Simple_repeat 1 32 0 649 317 22 22 chr6 104501819 104502043 -84777511 + MIR SINE MIR 28 251 -11 301 302 68 0 chr6 104502616 104502747 -84776807 + MIR SINE MIR 15 163 -65 21 0 0 0 chr6 104503107 104503128 -84776426 + AT_rich Low_complexity Low_complexity 1 21 0 265 264 83 33 chr6 104503558 104503679 -84775875 - MIR SINE MIR -76 186 60 3695 30 0 0 chr6 104505037 104505471 -84774083 + L1PA4 LINE L1 5704 6137 -18 3111 32 0 0 chr6 104505102 104505471 -84774083 + L1PA4 LINE L1 5769 6186 0 442 0 0 0 chr6 104505471 104505520 -84774034 + (TAA)n Simple_repeat Simple_repeat 3 180 0 333 360 35 15 chr6 104506430 104506630 -84772924 + MIR SINE MIR 49 252 -10 1890 147 14 0 chr6 104507734 104508027 -84771527 + AluSx SINE Alu 1 297 -15 584 298 44 19 chr6 104508662 104508867 -84770687 + MIR SINE MIR 53 262 0 180 0 0 0 chr6 104509430 104509450 -84770104 + (A)n Simple_repeat Simple_repeat 1 20 0 348 235 11 59 chr6 104510255 104510373 -84769181 + MLT1J2 LTR MaLR 296 401 -8 312 27 0 0 chr6 104510896 104510933 -84768621 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 1198 208 60 4 chr6 104510955 104511220 -84768334 - MLT1E LTR MaLR -46 547 268 1139 281 71 39 chr6 104511227 104511721 -84767833 + LTR33 LTR ERVL 5 514 -7 7630 209 30 15 chr6 104511807 104514592 -84764962 - L1MB3 LINE L1 -2 6417 3595 10800 196 51 26 chr6 104514594 104517283 -84762271 - L1MB3 LINE L1 -3603 2779 21 2641 144 9 21 chr6 104518081 104518512 -84761042 - MSTB LTR MaLR 0 426 1 2064 132 0 0 chr6 104518648 104518943 -84760611 - AluSc SINE Alu -12 297 3 215 167 0 21 chr6 104519399 104519447 -84760107 + CT-rich Low_complexity Low_complexity 3 49 0 320 295 65 36 chr6 104519645 104519784 -84759770 + LTR67 LTR ERVL 10 152 -405 439 184 83 18 chr6 104519925 104520034 -84759520 + LTR67 LTR ERVL 434 549 -8 284 322 24 24 chr6 104520320 104520456 -84759098 + MER5B DNA MER1_type 54 178 0 293 301 62 9 chr6 104520669 104520782 -84758772 + MIR SINE MIR 37 155 -107 336 232 91 10 chr6 104520896 104520995 -84758559 + MLT1J2 LTR MaLR 15 121 -329 369 174 0 0 chr6 104524255 104524324 -84755230 + (TG)n Simple_repeat Simple_repeat 1 69 0 245 128 21 0 chr6 104524323 104524370 -84755184 + GA-rich Low_complexity Low_complexity 1 48 0 * 543 257 96 16 chr6 104525669 104525856 -84753698 + MIR SINE MIR 49 250 -12 397 209 64 9 chr6 104525970 104526078 -84753476 + L1MC4a LINE L1 7675 7775 -33 357 82 0 0 chr6 104526273 104526322 -84753232 + (TG)n Simple_repeat Simple_repeat 1 49 0 344 281 7 67 chr6 104526791 104526926 -84752628 - L2 LINE L2 -170 3102 2976 611 363 102 25 chr6 104526972 104527543 -84752011 - L2 LINE L2 -416 2898 2284 3008 78 39 18 chr6 104527543 104528003 -84751551 + L1PA10 LINE L1 5703 6171 0 1126 201 27 15 chr6 104528010 104528273 -84751281 + L1MD3 LINE L1 7730 7995 0 2527 174 45 54 chr6 104529284 104529843 -84749711 - MLT2B3 LTR ERVL 0 554 1 228 35 0 0 chr6 104530143 104530172 -84749382 + (T)n Simple_repeat Simple_repeat 1 29 0 517 345 24 17 chr6 104530662 104531071 -84748483 - Charlie4 DNA MER1_type -1127 834 423 319 327 9 9 chr6 104531563 104531676 -84747878 - L2 LINE L2 -4 3309 3197 21 57 0 0 chr6 104531790 104531825 -84747729 + AT_rich Low_complexity Low_complexity 1 35 0 29 60 0 0 chr6 104533283 104533333 -84746221 + AT_rich Low_complexity Low_complexity 1 50 0 927 298 86 37 chr6 104534070 104534566 -84744988 - L2 LINE L2 0 3313 2798 270 206 32 0 chr6 104534622 104534685 -84744869 - MER5A DNA MER1_type -83 106 42 * 2657 273 118 104 chr6 104534670 104535709 -84743845 - L2 LINE L2 -484 2830 1660 247 216 31 52 chr6 104535709 104535806 -84743748 - L1MC5 LINE L1 -53 7908 7814 2657 273 118 104 chr6 104535806 104536507 -84743047 - L2 LINE L2 -1654 1660 970 310 314 50 69 chr6 104536959 104537220 -84742334 + MIR SINE MIR 1 256 -6 208 319 111 0 chr6 104537421 104537556 -84741998 + L2 LINE L2 3160 3309 -4 242 56 28 0 chr6 104537843 104537879 -84741675 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 29 60 0 0 chr6 104538404 104538454 -84741100 + AT_rich Low_complexity Low_complexity 1 50 0 200 278 0 28 chr6 104538465 104538537 -84741017 + (CATA)n Simple_repeat Simple_repeat 3 72 0 1215 118 0 5 chr6 104539206 104539393 -84740161 - L1PA13 LINE L1 -1 6162 5977 2536 131 133 2 chr6 104539393 104539880 -84739674 + Tigger3(Golem) DNA MER2_type 2186 2736 -293 1914 192 32 31 chr6 104539880 104540432 -84739122 + MLT2A2 LTR ERVL 1 554 0 1605 157 36 52 chr6 104540432 104540732 -84738822 + Tigger3(Golem) DNA MER2_type 2733 3027 -2 307 247 71 12 chr6 104540781 104540866 -84738688 + L1MC4 LINE L1 6614 6703 -1339 275 270 90 0 chr6 104541584 104541684 -84737870 - MER115 DNA AcHobo -584 109 1 216 67 0 0 chr6 104543145 104543175 -84736379 + (TA)n Simple_repeat Simple_repeat 2 31 0 201 175 0 0 chr6 104543346 104543386 -84736168 + GA-rich Low_complexity Low_complexity 3 42 0 368 337 38 60 chr6 104543435 104543619 -84735935 + HAL1b LINE L1 394 581 -767 573 55 0 0 chr6 104543619 104543692 -84735862 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 368 337 38 60 chr6 104543692 104543712 -84735842 + HAL1b LINE L1 581 600 -748 1463 224 24 27 chr6 104543712 104544087 -84735467 - MLT1A2 LTR MaLR 0 374 1 368 337 38 60 chr6 104544087 104544228 -84735326 + HAL1b LINE L1 600 732 -616 23 33 0 0 chr6 104544467 104544497 -84735057 + AT_rich Low_complexity Low_complexity 1 30 0 1623 134 0 0 chr6 104544642 104544873 -84734681 - AluSx SINE Alu -81 231 1 2509 283 107 65 chr6 104545013 104546642 -84732912 + L2 LINE L2 1452 3149 -164 939 203 87 4 chr6 104546719 104546960 -84732594 - MER63C DNA MER1_type 0 931 671 2733 225 47 10 chr6 104546966 104547587 -84731967 + MER82 DNA MER2_type 10 653 0 1967 251 54 9 chr6 104547619 104548153 -84731401 - MER63C DNA MER1_type -282 648 91 584 135 7 135 chr6 104548730 104548871 -84730683 + MSTC LTR MaLR 221 343 -85 10179 141 12 25 chr6 104548916 104550657 -84728897 + L1PA6 LINE L1 11 1729 -4417 18478 68 3 4 chr6 104550664 104553917 -84725637 + L1PA6 LINE L1 2887 6153 -1 21 0 0 0 chr6 104553938 104553959 -84725595 + AT_rich Low_complexity Low_complexity 1 21 0 348 384 78 0 chr6 104554025 104554309 -84725245 + L1M4 LINE L1 3511 3816 -2330 693 264 47 14 chr6 104554345 104554561 -84724993 - MIR SINE MIR -1 261 35 180 277 265 0 chr6 104555319 104555402 -84724152 + MER5A DNA MER1_type 65 169 -20 1978 269 51 9 chr6 104555573 104556123 -84723431 + MER119 DNA MER1_type 1 573 -10 209 313 164 0 chr6 104556248 104556376 -84723178 - MIR SINE MIR -24 238 90 29 90 0 0 chr6 104557828 104557906 -84721648 + AT_rich Low_complexity Low_complexity 1 78 0 369 273 23 68 chr6 104558697 104558829 -84720725 - L2 LINE L2 -10 3303 3178 386 230 35 0 chr6 104559500 104559587 -84719967 + L1MC4 LINE L1 6614 6703 -1339 196 111 44 0 chr6 104559590 104559635 -84719919 + (TA)n Simple_repeat Simple_repeat 2 48 0 367 304 78 30 chr6 104559635 104559650 -84719904 - L1ME4a LINE L1 -157 5964 5951 2112 118 0 3 chr6 104559650 104559964 -84719590 - AluSq SINE Alu 0 313 1 367 304 78 30 chr6 104559964 104560177 -84719377 - L1ME4a LINE L1 -170 5951 5724 1783 156 0 18 chr6 104560194 104560476 -84719078 + AluJo SINE Alu 1 277 -35 195 162 0 0 chr6 104560477 104560514 -84719040 + (TAA)n Simple_repeat Simple_repeat 1 37 0 2432 77 0 3 chr6 104560724 104561035 -84718519 + AluY SINE Alu 1 310 -1 537 303 42 0 chr6 104561045 104561210 -84718344 + MIR SINE MIR 26 197 -65 712 154 0 54 chr6 104561240 104561370 -84718184 - AluSq/x SINE Alu -190 123 1 183 224 61 0 chr6 104561370 104561419 -84718135 + MIR SINE MIR 173 224 -38 421 183 58 42 chr6 104561813 104561933 -84717621 - MER101B LTR ERV1 -448 122 1 33 66 0 0 chr6 104562404 104562465 -84717089 + AT_rich Low_complexity Low_complexity 1 61 0 2039 169 16 53 chr6 104562605 104563056 -84716498 - Tigger2a DNA MER2_type 0 434 1 1590 154 59 16 chr6 104563062 104563354 -84716200 - Tigger3(Golem) DNA MER2_type -1 3028 2724 3220 196 67 60 chr6 104563354 104563571 -84715983 + MER21B LTR ERV1 1 215 -648 1802 168 165 5 chr6 104563571 104563940 -84715614 + MSTA LTR MaLR 1 428 0 3220 196 67 60 chr6 104563940 104564493 -84715061 + MER21B LTR ERV1 215 777 -86 324 48 0 0 chr6 104564984 104565026 -84714528 + (CA)n Simple_repeat Simple_repeat 2 43 0 2316 104 0 10 chr6 104565501 104565810 -84713744 + AluSq SINE Alu 1 306 -7 885 196 6 0 chr6 104565825 104565983 -84713571 - FRAM SINE Alu -7 159 1 361 297 57 57 chr6 104565992 104566217 -84713337 + L1MC4a LINE L1 5607 5834 -1974 2429 83 0 0 chr6 104566217 104566517 -84713037 + AluSq SINE Alu 1 300 -13 361 297 57 57 chr6 104566517 104566591 -84712963 + L1MC4a LINE L1 5833 5906 -1902 1585 129 4 4 chr6 104567771 104568012 -84711542 - AluSg SINE Alu -6 304 64 1658 166 29 16 chr6 104568205 104568512 -84711042 - MSTA-int LTR MaLR -1336 315 5 2335 158 57 2 chr6 104568516 104568922 -84710632 - MSTA LTR MaLR 0 428 1 227 37 0 0 chr6 104568924 104568951 -84710603 - Tigger3(Golem) DNA MER2_type -723 2306 2280 378 233 0 0 chr6 104568956 104569029 -84710525 + Tigger3(Golem) DNA MER2_type 10 82 -2947 29 47 0 0 chr6 104569637 104569680 -84709874 + AT_rich Low_complexity Low_complexity 1 43 0 391 317 93 12 chr6 104620359 104620618 -84658936 + L1ME3A LINE L1 5683 5962 -208 1495 40 5 25 chr6 104620988 104621239 -84658315 + L1PA4 LINE L1 5958 6204 0 579 181 9 0 chr6 104622053 104622169 -84657385 - L1MA4A LINE L1 0 6303 6187 464 321 180 16 chr6 104622258 104622563 -84656991 - L3 LINE CR1 -5 1572 1218 1469 51 0 0 chr6 104623071 104623247 -84656307 + AluY SINE Alu 131 306 -5 23 33 0 0 chr6 104623484 104623514 -84656040 + AT_rich Low_complexity Low_complexity 1 30 0 27 87 0 0 chr6 104623729 104623798 -84655756 + AT_rich Low_complexity Low_complexity 1 69 0 333 298 72 75 chr6 104624350 104624629 -84654925 + L3 LINE CR1 1050 1327 -250 192 323 0 86 chr6 104624763 104624856 -84654698 + L2 LINE L2 3188 3272 0 396 109 16 0 chr6 104626208 104626272 -84653282 - Tigger1 DNA MER2_type -1423 995 931 195 386 70 18 chr6 104626272 104626386 -84653168 + MIR SINE MIR 9 128 -134 38 81 0 0 chr6 104626871 104626958 -84652596 + AT_rich Low_complexity Low_complexity 1 87 0 350 286 116 26 chr6 104626958 104627147 -84652407 + MER102a DNA MER1_type 120 325 -5 593 304 106 54 chr6 104627608 104627739 -84651815 + L2 LINE L2 2366 2489 -824 2178 187 67 29 chr6 104627739 104628216 -84651338 - LTR42 LTR ERVL 0 495 1 593 304 106 54 chr6 104628216 104628971 -84650583 + L2 LINE L2 2489 3312 -1 3661 100 6 111 chr6 104629178 104629827 -84649727 + LTR12 LTR ERV1 1 581 -133 2223 255 113 19 chr6 104632208 104632492 -84647062 - L1M4 LINE L1 -2598 3548 3292 180 0 0 0 chr6 104632492 104632512 -84647042 + (TC)n Simple_repeat Simple_repeat 2 21 0 2223 255 113 19 chr6 104632512 104633210 -84646344 - L1M4 LINE L1 -2854 3292 2474 450 0 0 0 chr6 104633247 104633297 -84646257 + (TG)n Simple_repeat Simple_repeat 1 50 0 899 178 7 7 chr6 104633297 104633449 -84646105 - AluJb SINE Alu -33 279 128 2078 126 0 13 chr6 104633628 104633929 -84645625 - AluSx SINE Alu -15 297 1 2274 120 14 19 chr6 104634147 104634513 -84645041 - THE1C LTR MaLR -11 364 1 378 0 0 0 chr6 104635236 104635278 -84644276 + (CA)n Simple_repeat Simple_repeat 1 42 0 194 103 0 51 chr6 104636375 104636414 -84643140 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 312 133 0 0 chr6 104636984 104637044 -84642510 + (CA)n Simple_repeat Simple_repeat 1 60 0 4776 39 0 3 chr6 104637905 104638498 -84641056 - L1P LINE L1 -1045 5101 4511 7198 44 2 6 chr6 104638498 104639511 -84640043 + L1PA5 LINE L1 5145 6154 0 227 299 0 0 chr6 104639524 104639591 -84639963 + HsTC2 DNA Tc2 1832 1898 0 36 62 0 0 chr6 104639709 104639773 -84639781 + AT_rich Low_complexity Low_complexity 1 64 0 23 33 0 0 chr6 104639785 104639815 -84639739 + AT_rich Low_complexity Low_complexity 1 30 0 37 0 0 0 chr6 104640199 104640236 -84639318 + AT_rich Low_complexity Low_complexity 1 37 0 239 322 92 13 chr6 104641353 104641505 -84638049 - MIR SINE MIR -25 237 74 27 49 0 0 chr6 104641833 104641874 -84637680 + AT_rich Low_complexity Low_complexity 1 41 0 224 275 33 11 chr6 104642444 104642535 -84637019 - MIR SINE MIR -64 198 106 189 262 0 0 chr6 104642805 104642847 -84636707 + L2 LINE L2 3267 3308 -5 551 349 88 41 chr6 104643313 104643926 -84635628 + L2 LINE L2 1864 2505 -809 227 253 53 11 chr6 104644433 104644528 -84635026 - HAL1 LINE L1 -899 1608 1510 824 330 107 54 chr6 104644685 104645230 -84634324 - L1MEd LINE L1 -4880 1239 639 20030 36 0 2 chr6 104645230 104648451 -84631103 - L1PA4 LINE L1 -1 6154 2938 824 330 107 54 chr6 104648451 104648678 -84630876 - L1MEd LINE L1 -5480 639 426 24 32 0 0 chr6 104650676 104650707 -84628847 + AT_rich Low_complexity Low_complexity 1 31 0 204 256 0 0 chr6 104651503 104651542 -84628012 - L2 LINE L2 -9 3304 3266 48 32 0 0 chr6 104652490 104652552 -84627002 + AT_rich Low_complexity Low_complexity 1 62 0 416 289 235 0 chr6 104653018 104653184 -84626370 - MIR SINE MIR -21 241 37 227 177 24 97 chr6 104653216 104653232 -84626322 - L1MA7 LINE L1 0 6291 6276 7288 260 70 26 chr6 104653232 104655726 -84623828 - L1ME1 LINE L1 -25 6421 3715 1836 130 40 13 chr6 104655726 104656026 -84623528 - AluSg SINE Alu -2 308 1 7288 260 70 26 chr6 104656026 104657311 -84622243 - L1ME1 LINE L1 -2731 3715 2488 368 252 49 14 chr6 104657316 104657459 -84622095 + L1MEc LINE L1 2028 2175 -4221 450 257 115 9 chr6 104657469 104657687 -84621867 - L1ME1 LINE L1 -4108 2499 2259 922 288 38 47 chr6 104657743 104658341 -84621213 - L1ME1 LINE L1 -4202 2225 1374 344 316 57 20 chr6 104658350 104658594 -84620960 - L1MEc LINE L1 -5002 1394 1142 2546 264 79 21 chr6 104658599 104659559 -84619995 - L1MEc LINE L1 -5344 1052 37 877 244 132 65 chr6 104659571 104659606 -84619948 - MLT2B1 LTR ERVL -5 515 484 276 91 0 0 chr6 104659606 104659650 -84619904 + (TG)n Simple_repeat Simple_repeat 1 44 0 877 244 132 65 chr6 104659650 104660032 -84619522 - MLT2B1 LTR ERVL -36 484 70 22 0 0 0 chr6 104660963 104660985 -84618569 + AT_rich Low_complexity Low_complexity 1 22 0 239 290 0 10 chr6 104661618 104661718 -84617836 + (TTTA)n Simple_repeat Simple_repeat 4 102 0 180 0 0 0 chr6 104664517 104664537 -84615017 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 191 293 0 35 chr6 104666695 104666753 -84612801 - L2 LINE L2 -2 3311 3256 479 253 35 11 chr6 104667243 104667417 -84612137 + MER5B DNA MER1_type 1 178 0 277 309 12 12 chr6 104668414 104668495 -84611059 - L2 LINE L2 -8 3264 3184 26 30 0 0 chr6 104669188 104669221 -84610333 + AT_rich Low_complexity Low_complexity 1 33 0 443 258 100 48 chr6 104670913 104671204 -84608350 - HAL1 LINE L1 -801 1706 1401 410 315 45 45 chr6 104671300 104671522 -84608032 - L1MEd LINE L1 -4958 1161 940 204 200 0 0 chr6 104671873 104671918 -84607636 + (TA)n Simple_repeat Simple_repeat 2 46 0 358 348 107 6 chr6 104673298 104673476 -84606078 + MIR SINE MIR 3 198 -64 206 300 57 0 chr6 104673607 104673677 -84605877 + L3b LINE CR1 1424 1497 -86 24 0 0 0 chr6 104675196 104675220 -84604334 + AT_rich Low_complexity Low_complexity 1 24 0 279 0 0 0 chr6 104676259 104676290 -84603264 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr6 104676577 104676598 -84602956 + AT_rich Low_complexity Low_complexity 1 21 0 725 86 78 0 chr6 104677087 104677203 -84602351 - L1PA13 LINE L1 -13 6150 6026 273 289 10 41 chr6 104678365 104678462 -84601092 + L2 LINE L2 2991 3084 -188 6443 77 24 1 chr6 104678805 104679792 -84599762 + L1PA8 LINE L1 5162 6168 -4 209 294 50 34 chr6 104680580 104680699 -84598855 + L2 LINE L2 2916 3036 -236 192 111 0 0 chr6 104680926 104680962 -84598592 + (A)n Simple_repeat Simple_repeat 1 36 0 420 198 12 0 chr6 104680962 104681043 -84598511 - MLT1C LTR MaLR -376 91 10 378 323 10 0 chr6 104682062 104682158 -84597396 - L2 LINE L2 0 3272 3176 30 0 0 0 chr6 104683343 104683373 -84596181 + AT_rich Low_complexity Low_complexity 1 30 0 192 208 14 139 chr6 104683789 104683861 -84595693 + MIR SINE MIR 120 182 -80 202 189 0 0 chr6 104684488 104684525 -84595029 + CT-rich Low_complexity Low_complexity 3 39 0 900 201 0 0 chr6 104685148 104685307 -84594247 - AluJb SINE Alu -7 305 147 288 120 0 0 chr6 104685307 104685357 -84594197 + (CA)n Simple_repeat Simple_repeat 1 50 0 318 114 43 0 chr6 104685357 104685427 -84594127 + (TA)n Simple_repeat Simple_repeat 2 74 0 580 210 59 0 chr6 104685428 104685547 -84594007 - FLAM_C SINE Alu -17 126 1 795 232 104 83 chr6 104685579 104685954 -84593600 + MLT1C LTR MaLR 1 460 -7 462 138 69 0 chr6 104686291 104686378 -84593176 + AluSg/x SINE Alu 213 305 -5 373 269 131 8 chr6 104687740 104687870 -84591684 - L2 LINE L2 0 3313 3168 450 365 79 6 chr6 104688238 104688567 -84590987 - L2 LINE L2 -542 2772 2420 641 197 59 67 chr6 104690040 104690279 -84589275 + Charlie5 DNA MER1_type 2386 2622 0 22 0 0 0 chr6 104691111 104691133 -84588421 + AT_rich Low_complexity Low_complexity 1 22 0 236 311 107 33 chr6 104691232 104691354 -84588200 - L2 LINE L2 -1 3312 3182 4677 150 6 21 chr6 104691368 104692189 -84587365 - L1PB4 LINE L1 -3 6153 5345 973 51 0 22 chr6 104692196 104692334 -84587220 + (TTTC)n Simple_repeat Simple_repeat 3 137 0 1618 165 8 0 chr6 104692371 104692626 -84586928 - AluSx SINE Alu -45 267 11 306 71 0 0 chr6 104692634 104692676 -84586878 - L1PB4 LINE L1 -799 5367 5326 339 182 26 13 chr6 104692679 104692756 -84586798 - AluSp/q SINE Alu 0 303 226 5388 199 36 3 chr6 104692756 104693965 -84585589 - L1PB4 LINE L1 -818 5328 4080 257 309 37 19 chr6 104694443 104694605 -84584949 + L1MC4a LINE L1 5767 5931 -1877 245 275 14 0 chr6 104694607 104694676 -84584878 + HAL1b LINE L1 1187 1256 -92 1203 255 67 87 chr6 104695004 104695764 -84583790 + L1M4 LINE L1 3445 4189 -1957 2071 103 4 4 chr6 104695766 104696082 -84583472 + AluSq SINE Alu 2 317 0 355 171 57 0 chr6 104696082 104696152 -84583402 + L1M4 LINE L1 5485 5558 -616 24 0 0 0 chr6 104696295 104696319 -84583235 + AT_rich Low_complexity Low_complexity 1 24 0 577 45 34 0 chr6 104697479 104697567 -84581987 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 357 346 26 0 chr6 104697586 104697742 -84581812 - MIR SINE MIR -20 242 83 2360 66 0 35 chr6 104697971 104698290 -84581264 + AluY SINE Alu 1 308 -3 21 0 0 0 chr6 104698969 104698990 -84580564 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 104699077 104699104 -84580450 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr6 104699993 104700015 -84579539 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 104700527 104700547 -84579007 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 23 33 0 0 chr6 104700947 104700977 -84578577 + AT_rich Low_complexity Low_complexity 1 30 0 521 289 132 10 chr6 104701858 104702055 -84577499 - MIR SINE MIR -10 252 32 2670 14 0 0 chr6 104702218 104702515 -84577039 - AluYa5 SINE Alu -14 297 1 524 347 83 74 chr6 104702761 104703698 -84575856 + HAL1 LINE L1 976 1921 -586 34 94 0 0 chr6 104704434 104704519 -84575035 + AT_rich Low_complexity Low_complexity 1 85 0 320 228 130 11 chr6 104704589 104704681 -84574873 - MLT1K LTR MaLR -50 538 436 2044 122 73 14 chr6 104704691 104705045 -84574509 + THE1C LTR MaLR 1 375 0 4164 109 73 29 chr6 104705045 104705725 -84573829 + THE1C-int LTR MaLR 1 710 -870 930 148 89 10 chr6 104705733 104705940 -84573614 + THE1C LTR MaLR 188 375 0 291 241 52 0 chr6 104705967 104706025 -84573529 - MLT1K LTR MaLR -202 386 326 253 355 6 23 chr6 104706110 104706279 -84573275 - MIR SINE MIR 0 262 5 370 233 105 0 chr6 104706309 104706395 -84573159 - MLT1K LTR MaLR -415 173 79 207 271 0 31 chr6 104706441 104706537 -84573017 + GA-rich Low_complexity Low_complexity 2 94 0 212 356 144 15 chr6 104707304 104707436 -84572118 + MIR SINE MIR 56 204 -58 228 342 175 17 chr6 104707857 104708091 -84571463 + L2 LINE L2 2551 2821 -493 1084 220 42 92 chr6 104708887 104709432 -84570122 + L1MC5 LINE L1 7018 7535 -426 307 350 51 34 chr6 104709486 104709663 -84569891 + L1ME3A LINE L1 5961 6140 -30 1298 172 4 97 chr6 104710592 104710860 -84568694 + AluJb SINE Alu 2 244 -68 252 0 0 0 chr6 104710860 104710888 -84568666 + (CA)n Simple_repeat Simple_repeat 1 28 0 37 52 0 0 chr6 104711683 104711741 -84567813 + AT_rich Low_complexity Low_complexity 1 58 0 611 259 126 51 chr6 104711889 104712339 -84567215 + LTR33A LTR ERVL 1 500 -23 339 380 8 0 chr6 104712813 104712942 -84566612 + MIR SINE MIR 45 174 -88 1672 184 0 0 chr6 104713015 104713298 -84566256 + AluJo SINE Alu 1 283 -29 1775 142 36 8 chr6 104713618 104714033 -84565521 - LTR32 LTR ERVL 0 471 16 216 351 27 0 chr6 104716002 104716076 -84563478 - MIR SINE MIR -55 153 78 263 168 59 20 chr6 104716258 104716359 -84563195 + (TTATA)n Simple_repeat Simple_repeat 5 109 0 27 49 0 0 chr6 104716740 104716781 -84562773 + AT_rich Low_complexity Low_complexity 1 41 0 739 83 9 0 chr6 104717649 104717757 -84561797 + AluY SINE Alu 139 247 -64 233 118 0 0 chr6 104717757 104717791 -84561763 + (A)n Simple_repeat Simple_repeat 1 34 0 196 240 0 20 chr6 104718748 104718798 -84560756 - MIR SINE MIR -78 130 82 2263 244 16 40 chr6 104718918 104719614 -84559940 - L1MB7 LINE L1 -13 6171 5493 324 297 45 20 chr6 104720292 104720494 -84559060 - L1M4 LINE L1 -6319 223 17 228 231 39 0 chr6 104720812 104720864 -84558690 + HAL1 LINE L1 256 309 -2198 * 376 249 91 18 chr6 104720858 104721023 -84558531 + L1ME3A LINE L1 5730 5906 -264 25 0 0 0 chr6 104721037 104721062 -84558492 + AT_rich Low_complexity Low_complexity 1 25 0 617 250 111 0 chr6 104721176 104721348 -84558206 + MER58B DNA MER1_type 151 341 0 299 133 0 33 chr6 104721355 104721415 -84558139 + (CATA)n Simple_repeat Simple_repeat 2 59 0 336 289 13 6 chr6 104721434 104721590 -84557964 + (TA)n Simple_repeat Simple_repeat 2 158 0 8972 26 0 4 chr6 104721777 104722841 -84556713 - L1PA2 LINE L1 -1041 5105 4046 7795 14 2 0 chr6 104722841 104723882 -84555672 + L1PA2 LINE L1 5110 6152 -3 2089 104 0 0 chr6 104723983 104724251 -84555303 - AluSx SINE Alu -16 296 29 375 149 30 0 chr6 104724598 104724665 -84554889 - MLT1E1 LTR MaLR -2 652 584 2468 174 25 80 chr6 104724665 104725293 -84554261 + L1MB3 LINE L1 5552 6145 -38 410 352 44 31 chr6 104725295 104725522 -84554032 + HAL1 LINE L1 1314 1543 -964 319 332 153 0 chr6 104725578 104725774 -84553780 + HAL1 LINE L1 1686 1911 -596 32 75 0 0 chr6 104726139 104726206 -84553348 + AT_rich Low_complexity Low_complexity 1 67 0 366 23 0 0 chr6 104727228 104727271 -84552283 + (TC)n Simple_repeat Simple_repeat 2 44 0 24 0 0 0 chr6 104727395 104727419 -84552135 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 104728687 104728708 -84550846 + AT_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr6 104731561 104731617 -84547937 + AT_rich Low_complexity Low_complexity 1 56 0 29 28 0 0 chr6 104732343 104732379 -84547175 + AT_rich Low_complexity Low_complexity 1 36 0 1321 99 1 5 chr6 104732939 104733134 -84546420 - pTR5 LTR ERV1 -2045 393 67 331 263 10 0 chr6 104733134 104733233 -84546321 - LTR30 LTR ERV1 -79 643 544 2465 150 66 51 chr6 104733238 104733840 -84545714 - pTR5 LTR ERV1 -418 2020 1088 610 195 13 39 chr6 104733822 104733976 -84545578 - pTR5 LTR ERV1 -1548 890 741 * 1895 204 21 3 chr6 104734438 104734772 -84544782 - MSTB LTR MaLR -86 340 1 3029 116 22 0 chr6 104735842 104736298 -84543256 - L1PA13 LINE L1 -2 6161 5696 1414 161 39 9 chr6 104736298 104736664 -84542890 + L1PA13 LINE L1 5201 5724 -444 2371 129 20 0 chr6 104736821 104737178 -84542376 + THE1B LTR MaLR 1 364 0 8432 154 38 70 chr6 104737178 104738811 -84540743 + THE1B-int LTR MaLR 1 1580 0 2239 144 28 0 chr6 104738811 104739165 -84540389 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr6 104739760 104739786 -84539768 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr6 104739839 104739874 -84539680 + AT_rich Low_complexity Low_complexity 1 35 0 6645 48 1 2 chr6 104739909 104740847 -84538707 - L1PA4 LINE L1 -665 5489 4553 5469 39 3 0 chr6 104740847 104741508 -84538046 + L1PA4 LINE L1 5492 6155 0 25 0 0 0 chr6 104742156 104742181 -84537373 + AT_rich Low_complexity Low_complexity 1 25 0 194 62 31 0 chr6 104742882 104742914 -84536640 + (CAAAG)n Simple_repeat Simple_repeat 2 34 0 417 248 68 0 chr6 104743132 104743265 -84536289 - LTR33 LTR ERVL -3 518 377 1380 310 104 21 chr6 104743293 104743591 -84535963 + L2 LINE L2 2334 2606 -707 3177 158 28 23 chr6 104743591 104744191 -84535363 + LTR26 LTR ERV1 1 603 0 1380 310 104 21 chr6 104744191 104744546 -84535008 + L2 LINE L2 2606 3031 -282 316 261 50 37 chr6 104744546 104744707 -84534847 - L1M2 LINE L1 -4400 2449 2287 1055 235 34 99 chr6 104744795 104745178 -84534376 + MLT1A2 LTR MaLR 17 374 0 551 253 194 20 chr6 104745178 104745617 -84533937 - L1MEd LINE L1 -4905 1214 700 333 0 0 0 chr6 104748805 104748842 -84530712 + (TG)n Simple_repeat Simple_repeat 2 38 0 34 93 0 0 chr6 104748942 104749039 -84530515 + AT_rich Low_complexity Low_complexity 1 97 0 270 0 0 0 chr6 104750203 104750233 -84529321 + (A)n Simple_repeat Simple_repeat 1 30 0 374 174 17 23 chr6 104750479 104750651 -84528903 + (TA)n Simple_repeat Simple_repeat 2 172 0 186 298 0 0 chr6 104753371 104753428 -84526126 - L2 LINE L2 -974 2340 2284 3303 111 6 2 chr6 104754170 104754658 -84524896 - L1PA13 LINE L1 -348 5815 5326 2480 93 0 0 chr6 104754635 104754979 -84524575 + L1PA13 LINE L1 5818 6161 -2 * 21 71 0 0 chr6 104755727 104755769 -84523785 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr6 104756355 104756377 -84523177 + AT_rich Low_complexity Low_complexity 1 22 0 13513 152 44 6 chr6 104756705 104759034 -84520520 - Tigger1 DNA MER2_type -1 2417 1 198 0 0 0 chr6 104759076 104759098 -84520456 + (TC)n Simple_repeat Simple_repeat 2 23 0 260 306 48 63 chr6 104759107 104759313 -84520241 - MIR SINE MIR -58 204 2 1925 164 3 0 chr6 104760588 104760899 -84518655 - AluSx SINE Alu 0 312 1 204 323 11 11 chr6 104761029 104761122 -84518432 + CT-rich Low_complexity Low_complexity 1 93 0 363 287 0 11 chr6 104761195 104761289 -84518265 + MLT1H LTR MaLR 82 174 -375 817 207 48 27 chr6 104761309 104761497 -84518057 - MER20 DNA MER1_type -21 198 7 2149 110 0 0 chr6 104761523 104761814 -84517740 + AluSc SINE Alu 16 306 -3 348 303 150 39 chr6 104761847 104762081 -84517473 + MLT1H LTR MaLR 233 492 -57 483 306 25 19 chr6 104762189 104762349 -84517205 + MIR SINE MIR 1 161 -101 2292 100 3 0 chr6 104762514 104762846 -84516708 + AluSx SINE Alu 2 334 0 24 32 0 0 chr6 104764542 104764573 -84514981 + AT_rich Low_complexity Low_complexity 1 31 0 182 36 0 36 chr6 104764671 104764699 -84514855 + (CTTAT)n Simple_repeat Simple_repeat 2 28 0 182 364 70 21 chr6 104764804 104764947 -84514607 + L2 LINE L2 2935 3084 -188 193 342 42 17 chr6 104765386 104765506 -84514048 - MIR SINE MIR -54 208 86 5496 168 20 11 chr6 104766668 104768022 -84511532 + L1PA16 LINE L1 4781 6157 -9 1330 187 13 0 chr6 104768036 104768271 -84511283 + Tigger1 DNA MER2_type 66 303 -2115 946 221 36 92 chr6 104770950 104771259 -84508295 + L1MC4 LINE L1 7559 7847 -195 1990 120 7 3 chr6 104771259 104771551 -84508003 - AluSc SINE Alu -16 293 1 946 221 36 92 chr6 104771551 104771599 -84507955 + L1MC4 LINE L1 7847 7896 -146 1447 204 3 32 chr6 104771679 104771992 -84507562 - AluJo SINE Alu -8 304 1 1993 117 0 0 chr6 104772196 104772517 -84507037 - AluY SINE Alu 0 321 1 512 265 0 0 chr6 104772923 104773040 -84506514 + Tigger5 DNA MER2_type 1 117 -2206 * 681 126 0 213 chr6 104773032 104773239 -84506315 + Tigger5 DNA MER2_type 2153 2315 -8 6387 190 79 12 chr6 104773407 104775273 -84504281 + L1MA3 LINE L1 4297 6305 0 239 307 11 0 chr6 104775631 104775719 -84503835 - L1ME LINE L1 -356 5765 5677 431 297 101 74 chr6 104777363 104777598 -84501956 - L1ME LINE L1 -1923 4223 3969 3767 139 24 68 chr6 104777598 104778419 -84501135 - LTR1 LTR ERV1 0 785 1 431 297 101 74 chr6 104778419 104778618 -84500936 - L1ME LINE L1 -2177 3969 3777 306 0 0 0 chr6 104779038 104779072 -84500482 + (TG)n Simple_repeat Simple_repeat 1 34 0 376 153 0 135 chr6 104779081 104779192 -84500362 - L1MC/D LINE L1 -816 5528 5433 2936 266 69 26 chr6 104780273 104781494 -84498060 + L1MEc LINE L1 37 1184 -4929 23 0 0 0 chr6 104782253 104782276 -84497278 + AT_rich Low_complexity Low_complexity 1 23 0 267 300 14 0 chr6 104784224 104784294 -84495260 - L2 LINE L2 -1 3271 3201 1160 88 109 10 chr6 104834940 104835133 -84444421 + MSTA LTR MaLR 217 428 0 2304 204 46 58 chr6 104835182 104835987 -84443567 + L1M4 LINE L1 3592 4386 -1760 854 182 33 23 chr6 104836087 104836301 -84443253 - MER33 DNA MER1_type -259 65 1 483 252 142 0 chr6 104837922 104837999 -84441555 - MER58C DNA MER1_type -2243 177 112 1806 156 0 41 chr6 104837999 104838313 -84441241 + AluJo SINE Alu 1 301 -11 483 252 142 0 chr6 104838313 104838390 -84441164 - MER58C DNA MER1_type -2308 112 1 921 192 25 29 chr6 104840337 104840648 -84438906 + Ricksha DNA DNA 2991 3254 -13 1000 202 105 68 chr6 104840744 104840986 -84438568 - MLT1A1 LTR MaLR 0 365 105 2803 97 20 56 chr6 104840986 104841390 -84438164 + MSTA LTR MaLR 1 389 -39 2563 74 0 6 chr6 104841390 104841701 -84437853 - AluSc SINE Alu 0 309 1 2803 97 20 56 chr6 104841701 104841740 -84437814 + MSTA LTR MaLR 389 428 0 1000 202 105 68 chr6 104841740 104841849 -84437705 - MLT1A1 LTR MaLR -260 105 1 786 179 0 37 chr6 104841858 104842020 -84437534 - MLT1E LTR MaLR -8 585 430 937 460 61 4 chr6 104842020 104842298 -84437256 + AluSc SINE Alu 1 294 -5 2545 146 60 21 chr6 104842298 104842812 -84436742 - L1MC1 LINE L1 -70 6263 5730 455 342 199 30 chr6 104842915 104843548 -84436006 + L2 LINE L2 1943 2760 -554 2106 123 3 25 chr6 104843548 104843865 -84435689 + AluSx SINE Alu 1 310 -2 455 342 199 30 chr6 104843865 104844091 -84435463 + L2 LINE L2 2760 2947 -367 401 353 82 18 chr6 104844701 104844871 -84434683 + L3b LINE CR1 1277 1457 -126 37 69 0 0 chr6 104845160 104845232 -84434322 + AT_rich Low_complexity Low_complexity 1 72 0 2436 132 8 0 chr6 104845369 104845741 -84433813 + THE1C LTR MaLR 1 375 0 9451 124 32 45 chr6 104845741 104847341 -84432213 + THE1C-int LTR MaLR 1 1580 0 2169 148 36 6 chr6 104847341 104847705 -84431849 + THE1C LTR MaLR 1 375 0 241 359 109 0 chr6 104849879 104850035 -84429519 + MIR SINE MIR 54 226 -36 196 106 0 43 chr6 104850738 104850785 -84428769 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 1881 148 57 20 chr6 104851279 104851630 -84427924 - THE1B LTR MaLR 0 364 1 3331 71 0 17 chr6 104851630 104852092 -84427462 - THE1B-int LTR MaLR 0 1580 1127 1014 126 0 0 chr6 104852095 104852246 -84427308 - THE1B-int LTR MaLR -584 996 846 252 0 0 0 chr6 104852252 104852280 -84427274 + (TTA)n Simple_repeat Simple_repeat 3 30 0 7425 30 0 11 chr6 104852281 104853740 -84425814 - L1PA4 LINE L1 -16 6139 4690 12503 37 3 2 chr6 104853742 104855366 -84424188 + L1PA4 LINE L1 3085 4710 -1436 5270 132 25 2 chr6 104855359 104856200 -84423354 - THE1B-int LTR MaLR -720 860 1 * 2076 134 57 20 chr6 104856200 104856551 -84423003 - THE1B LTR MaLR 0 364 1 589 272 25 12 chr6 104856664 104856826 -84422728 + MLT1A2 LTR MaLR 22 185 -189 894 201 5 26 chr6 104856892 104857081 -84422473 + MLT1A2 LTR MaLR 190 374 0 927 217 70 90 chr6 104857897 104858284 -84421270 - MLT1B LTR MaLR -11 379 1 411 278 76 35 chr6 104859078 104859431 -84420123 - MLT1G3 LTR MaLR -156 386 1 257 367 64 16 chr6 104860090 104860278 -84419276 - L2 LINE L2 -547 2767 2571 704 213 72 18 chr6 104860690 104860911 -84418643 - MARNA DNA Mariner -346 240 8 684 270 92 0 chr6 104862822 104863018 -84416536 + MIR SINE MIR 4 217 -45 240 242 32 0 chr6 104863037 104863099 -84416455 + (CATA)n Simple_repeat Simple_repeat 4 67 0 199 330 96 11 chr6 104863588 104863682 -84415872 - L2 LINE L2 -9 3263 3162 24 0 0 0 chr6 104863966 104863990 -84415564 + AT_rich Low_complexity Low_complexity 1 24 0 22 43 0 21 chr6 104864173 104864194 -84415360 + AT_rich Low_complexity Low_complexity 1 21 -25 2246 187 94 23 chr6 104864194 104864675 -84414879 - MLT2B2 LTR ERVL 0 515 1 22 43 0 21 chr6 104864675 104864700 -84414854 + AT_rich Low_complexity Low_complexity 21 46 0 1462 268 34 71 chr6 104865051 104865603 -84413951 + MLT1E LTR MaLR 62 593 0 276 27 0 0 chr6 104865807 104865844 -84413710 + L1PA3 LINE L1 6116 6152 -3 1357 213 38 14 chr6 104865854 104866141 -84413413 + MLT1A1 LTR MaLR 72 365 0 235 291 8 33 chr6 104867050 104867257 -84412297 + GA-rich Low_complexity Low_complexity 1 201 0 242 268 57 84 chr6 104867591 104867960 -84411594 - L1ME LINE L1 -238 5883 5525 21 36 0 0 chr6 104868801 104868829 -84410725 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr6 104869359 104869394 -84410160 + AT_rich Low_complexity Low_complexity 1 35 0 269 276 67 19 chr6 104871707 104871812 -84407742 + L2 LINE L2 3162 3271 -1 1725 209 40 10 chr6 104872075 104872477 -84407077 - MLT2D LTR ERVL 0 414 1 22 56 0 0 chr6 104872923 104872959 -84406595 + AT_rich Low_complexity Low_complexity 1 36 0 597 228 184 6 chr6 104873020 104873178 -84406376 + MER5A DNA MER1_type 4 189 0 261 324 103 7 chr6 104873663 104873808 -84405746 + L2 LINE L2 3145 3303 -10 425 352 0 6 chr6 104876281 104876440 -84403114 - MIR SINE MIR -104 158 1 1918 128 84 6 chr6 104876552 104876872 -84402682 + MER61C LTR ERV1 86 430 -4 248 379 136 6 chr6 104876978 104877155 -84402399 - L3 LINE CR1 -811 766 567 26 74 0 0 chr6 104877358 104877412 -84402142 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr6 104877878 104877899 -84401655 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 104879059 104879086 -84400468 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr6 104880721 104880742 -84398812 + AT_rich Low_complexity Low_complexity 1 21 0 1255 240 82 126 chr6 104882117 104882808 -84396746 + L1MC4a LINE L1 6139 6770 -1038 219 69 0 0 chr6 104882808 104882837 -84396717 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1255 240 82 126 chr6 104882837 104883201 -84396353 + L1MC4a LINE L1 6770 7148 -660 613 174 60 13 chr6 104883814 104883963 -84395591 - MER34 LTR ERV1 -6 536 381 2190 184 90 5 chr6 104884005 104884439 -84395115 - MER39 LTR ERV1 -236 471 1 21 36 0 0 chr6 104885631 104885659 -84393895 + AT_rich Low_complexity Low_complexity 1 28 0 862 258 37 18 chr6 104885890 104886244 -84393310 + L1ME4a LINE L1 5525 5883 -238 32 43 0 0 chr6 104886421 104886467 -84393087 + AT_rich Low_complexity Low_complexity 1 46 0 1455 245 59 3 chr6 104887953 104888328 -84391226 - MSTD LTR MaLR 0 396 1 2160 154 11 14 chr6 104889042 104889405 -84390149 + THE1B LTR MaLR 1 362 -2 3269 104 10 0 chr6 104889407 104889895 -84389659 + THE1B-int LTR MaLR 1 493 -1087 530 143 0 0 chr6 104889896 104889973 -84389581 + AluSg1 SINE Alu 21 97 -212 564 130 0 0 chr6 104890016 104890093 -84389461 + AluSg1 SINE Alu 21 97 -212 1860 172 0 16 chr6 104890096 104890136 -84389418 + THE1B-int LTR MaLR 455 494 -1086 1842 158 11 0 chr6 104890136 104890420 -84389134 + AluSg SINE Alu 21 307 -3 1860 172 0 16 chr6 104890420 104890698 -84388856 + THE1B-int LTR MaLR 494 768 -812 395 282 104 78 chr6 104890897 104891273 -84388281 - L1MC/D LINE L1 -582 5660 5258 2112 284 68 31 chr6 104891558 104891749 -84387805 - L1MC/D LINE L1 -1549 4597 4415 1246 216 9 90 chr6 104891749 104892083 -84387471 - AluJb SINE Alu -5 307 1 2112 284 68 31 chr6 104892083 104893164 -84386390 - L1MC/D LINE L1 -1731 4415 3278 503 270 0 24 chr6 104893193 104893319 -84386235 - L2 LINE L2 -3 3310 3188 1335 119 32 0 chr6 104893481 104893700 -84385854 + L1MA1 LINE L1 5956 6181 -121 237 329 84 26 chr6 104895223 104895378 -84384176 + MIR SINE MIR 1 164 -98 850 103 0 0 chr6 104895620 104895737 -84383817 - AluY SINE Alu -7 304 188 7608 86 6 17 chr6 104896771 104897854 -84381700 - MER11C LTR ERVK 0 1071 1 3114 139 12 2 chr6 104897854 104898365 -84381189 + L1MA1 LINE L1 5787 6302 0 250 267 44 22 chr6 104898996 104899086 -84380468 - L2 LINE L2 -4 3309 3218 2515 211 38 35 chr6 104899447 104900072 -84379482 + L1MB3 LINE L1 5548 6174 -9 24 53 0 0 chr6 104900246 104900284 -84379270 + AT_rich Low_complexity Low_complexity 1 38 0 315 251 52 89 chr6 104900382 104900573 -84378981 + L1ME LINE L1 5599 5782 -339 1891 76 30 4 chr6 104900580 104900842 -84378712 + L1P5 LINE L1 5527 5795 -356 318 239 0 22 chr6 104900844 104900936 -84378618 + L1MC4 LINE L1 6614 6703 -1339 234 220 0 17 chr6 104900937 104900996 -84378558 + (TA)n Simple_repeat Simple_repeat 1 58 0 2279 138 5 8 chr6 104900999 104901370 -84378184 + L1PB1 LINE L1 5782 6151 0 4721 96 4 1 chr6 104901505 104902182 -84377372 + L1PA13 LINE L1 5484 6162 -1 21 36 0 0 chr6 104902340 104902368 -84377186 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr6 104902456 104902489 -84377065 + AT_rich Low_complexity Low_complexity 1 33 0 898 206 109 66 chr6 104902629 104902978 -84376576 + MLT1A1 LTR MaLR 1 364 -1 1019 234 119 27 chr6 104903596 104904151 -84375403 + MLT2F LTR ERVL 1 652 -11 15703 148 26 21 chr6 104904321 104906405 -84373149 + Tigger4(Zombi) DNA MER2_type 6 2109 -622 1956 152 116 13 chr6 104906405 104906793 -84372761 + MSTA LTR MaLR 1 428 0 15703 148 26 21 chr6 104906793 104907420 -84372134 + Tigger4(Zombi) DNA MER2_type 2109 2731 0 337 217 25 117 chr6 104908192 104908312 -84371242 + L2 LINE L2 3189 3297 -16 315 359 57 26 chr6 104908599 104908791 -84370763 + L1MEd LINE L1 1017 1214 -4905 317 270 111 44 chr6 104908814 104909066 -84370488 + HAL1 LINE L1 1427 1695 -812 25 0 0 0 chr6 104909084 104909109 -84370445 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr6 104909361 104909390 -84370164 + AT_rich Low_complexity Low_complexity 1 29 0 204 341 0 78 chr6 104909689 104909856 -84369698 + L2 LINE L2 1816 1969 -1345 876 298 78 27 chr6 104909937 104910524 -84369030 - L1ME3A LINE L1 -224 5946 5330 198 0 0 0 chr6 104910526 104910548 -84369006 + (TTA)n Simple_repeat Simple_repeat 2 23 0 248 271 19 97 chr6 104910584 104910842 -84368712 - L1ME3A LINE L1 -867 5279 5042 329 326 94 0 chr6 104910862 104911150 -84368404 - L1ME3A LINE L1 -1198 4948 4634 21 0 0 0 chr6 104911272 104911293 -84368261 + AT_rich Low_complexity Low_complexity 1 21 0 2847 76 0 13 chr6 104911294 104911687 -84367867 - L1PA13 LINE L1 -5 6158 5771 695 195 12 59 chr6 104911820 104911989 -84367565 - ERVL LTR ERVL -3560 2204 2044 345 298 135 7 chr6 104911991 104912132 -84367422 - MLT2F LTR ERVL -416 247 89 1743 104 42 117 chr6 104912257 104912660 -84366894 - THE1C LTR MaLR -2 373 1 926 228 68 17 chr6 104912717 104912954 -84366600 - MLT1C LTR MaLR -169 298 50 211 222 37 12 chr6 104913203 104913284 -84366270 + (TA)n Simple_repeat Simple_repeat 1 83 0 24 32 0 0 chr6 104913397 104913428 -84366126 + AT_rich Low_complexity Low_complexity 1 31 0 270 203 16 16 chr6 104914021 104914085 -84365469 - MIR SINE MIR -13 249 186 27 0 0 0 chr6 104914444 104914471 -84365083 + AT_rich Low_complexity Low_complexity 1 27 0 4307 14 0 0 chr6 104914598 104915092 -84364462 + L1PA2 LINE L1 5661 6154 -1 26 50 0 0 chr6 104915534 104915574 -84363980 + AT_rich Low_complexity Low_complexity 1 40 0 1602 120 25 4 chr6 104915648 104915889 -84363665 - pTR5 LTR ERV1 -2021 417 172 308 284 10 0 chr6 104915891 104915993 -84363561 - LTR30 LTR ERV1 -79 643 541 6738 145 49 16 chr6 104915994 104917232 -84362322 - pTR5 LTR ERV1 -417 2021 743 22 0 0 0 chr6 104917365 104917387 -84362167 + AT_rich Low_complexity Low_complexity 1 22 0 310 287 49 94 chr6 104918148 104918371 -84361183 - L1MC4 LINE L1 -1 8041 7829 2575 21 0 0 chr6 104919984 104920275 -84359279 - AluYb8 SINE Alu -1 317 27 188 244 260 31 chr6 104920406 104920533 -84359021 + L2 LINE L2 3158 3313 0 528 288 46 8 chr6 104921992 104922232 -84357322 - L1ME4a LINE L1 -195 5926 5678 766 310 16 4 chr6 104922328 104922570 -84356984 + MIR SINE MIR 17 261 -1 263 306 0 9 chr6 104922570 104922681 -84356873 - L1ME4a LINE L1 -538 5583 5474 4662 208 26 11 chr6 104922725 104923716 -84355838 - L1MC1 LINE L1 -6 6327 5322 431 100 14 0 chr6 104924221 104924291 -84355263 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 240 233 12 12 chr6 104924445 104924531 -84355023 + (TA)n Simple_repeat Simple_repeat 2 87 0 21 57 0 0 chr6 104925348 104925383 -84354171 + AT_rich Low_complexity Low_complexity 1 35 0 398 305 115 32 chr6 104926261 104926635 -84352919 + MLT1I LTR MaLR 5 409 0 362 301 115 6 chr6 104928768 104928924 -84350630 + MIR SINE MIR 69 241 -21 803 292 306 23 chr6 104929116 104929956 -84349598 + L2 LINE L2 1271 2348 -966 527 262 187 82 chr6 104930533 104930997 -84348557 + MLT1G1 LTR MaLR 1 511 -56 1025 250 86 19 chr6 104931503 104932015 -84347539 + MER114 LTR ERV 100 645 -3 23 68 0 0 chr6 104932346 104932390 -84347164 + AT_rich Low_complexity Low_complexity 1 44 0 1631 77 5 0 chr6 104932722 104932944 -84346610 + L1PA7 LINE L1 1858 2080 -4066 6807 55 7 24 chr6 104932946 104933940 -84345614 + L1PA7 LINE L1 5177 6154 0 23 0 0 0 chr6 104935182 104935205 -84344349 + AT_rich Low_complexity Low_complexity 1 23 0 621 167 28 21 chr6 104935589 104935733 -84343821 - L1MB8 LINE L1 0 6178 6034 404 262 24 0 chr6 104935771 104935906 -84343648 - L1MB8 LINE L1 -319 5859 5721 2158 101 0 7 chr6 104935913 104936210 -84343344 - AluSg1 SINE Alu -14 295 1 2064 122 0 13 chr6 104937117 104937428 -84342126 - AluSc SINE Alu -2 307 1 180 0 0 0 chr6 104937807 104937827 -84341727 + (TG)n Simple_repeat Simple_repeat 2 21 0 1955 178 5 22 chr6 104938594 104938964 -84340590 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr6 104939577 104939608 -84339946 + AT_rich Low_complexity Low_complexity 1 31 0 508 29 29 0 chr6 104940371 104940441 -84339113 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 225 180 0 0 chr6 104940859 104940909 -84338645 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1669 171 3 35 chr6 104941551 104941867 -84337687 - AluJb SINE Alu -6 306 1 30 0 0 0 chr6 104943163 104943193 -84336361 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr6 104943986 104944013 -84335541 + AT_rich Low_complexity Low_complexity 1 27 0 291 292 40 69 chr6 104944266 104944468 -84335086 - L1ME LINE L1 -297 5867 5672 300 294 67 83 chr6 104944575 104944755 -84334799 + L1MEd LINE L1 2 178 -5941 21 0 0 0 chr6 104944965 104944986 -84334568 + AT_rich Low_complexity Low_complexity 1 21 0 252 255 5 93 chr6 104945455 104945671 -84333883 + L1MEd LINE L1 895 1091 -5028 562 170 35 7 chr6 104945685 104945826 -84333728 + Charlie5 DNA MER1_type 2468 2612 0 249 373 24 8 chr6 104946078 104946204 -84333350 + MIR3 SINE MIR 67 194 -14 231 36 0 0 chr6 104946890 104946918 -84332636 + (TA)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr6 104947373 104947394 -84332160 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr6 104947750 104947782 -84331772 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 104949227 104949248 -84330306 + AT_rich Low_complexity Low_complexity 1 21 0 554 163 44 59 chr6 104949344 104949479 -84330075 + L1MB1 LINE L1 6036 6168 0 924 161 0 67 chr6 104949498 104949721 -84329833 + L1MB1 LINE L1 5196 5403 -743 610 272 2 1 chr6 104949726 104949895 -84329659 - MLT1A2 LTR MaLR 0 374 219 3352 175 29 24 chr6 104949895 104950593 -84328961 + L1MB1 LINE L1 5468 6168 0 206 81 27 0 chr6 104951893 104951930 -84327624 + (CA)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr6 104952178 104952200 -84327354 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr6 104952375 104952420 -84327134 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr6 104952781 104952807 -84326747 + AT_rich Low_complexity Low_complexity 1 26 0 925 328 47 17 chr6 104952996 104953398 -84326156 - MLT1J LTR MaLR 0 511 98 1017 212 65 97 chr6 104955104 104955476 -84324078 - MLT1A1 LTR MaLR -5 360 1 350 380 85 15 chr6 104955487 104955948 -84323606 - L3 LINE CR1 -2 1575 1083 37149 95 7 8 chr6 104956758 104962908 -84316646 + L1PA6 LINE L1 11 6153 -1 21 36 0 0 chr6 104963021 104963049 -84316505 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr6 104963552 104963575 -84315979 + AT_rich Low_complexity Low_complexity 1 23 0 1335 134 40 200 chr6 104964251 104964697 -84314857 + THE1C LTR MaLR 1 375 0 200 274 0 0 chr6 104965609 104965660 -84313894 + GA-rich Low_complexity Low_complexity 4 54 0 36 0 0 0 chr6 104966608 104966644 -84312910 + AT_rich Low_complexity Low_complexity 1 36 0 645 320 44 16 chr6 104967249 104967636 -84311918 - L1MC/D LINE L1 -480 5762 5365 917 200 36 5 chr6 104967701 104967896 -84311658 - AluJo SINE Alu -25 287 87 227 188 158 61 chr6 104968333 104968498 -84311056 - L1M4 LINE L1 -3756 2390 2210 25 51 0 0 chr6 104969895 104969934 -84309620 + AT_rich Low_complexity Low_complexity 1 39 0 1456 188 10 108 chr6 104970248 104970331 -84309223 + MLT1B LTR MaLR 30 119 -271 2046 99 21 0 chr6 104970331 104970615 -84308939 + AluSc SINE Alu 5 294 -15 1456 188 10 108 chr6 104970615 104970931 -84308623 + MLT1B LTR MaLR 119 390 0 1990 117 0 14 chr6 104972608 104972891 -84306663 + AluSx SINE Alu 1 279 -33 198 0 0 0 chr6 104972892 104972914 -84306640 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 37 23 0 0 chr6 104973234 104973278 -84306276 + AT_rich Low_complexity Low_complexity 1 44 0 309 322 110 57 chr6 104973465 104973782 -84305772 - L1ME4a LINE L1 -260 5861 5528 5363 149 121 37 chr6 104973782 104974554 -84305000 + Tigger3b DNA MER2_type 1 707 -2321 2265 119 57 3 chr6 104974554 104974907 -84304647 + THE1C LTR MaLR 1 372 -3 5363 149 121 37 chr6 104974907 104975056 -84304498 + Tigger3b DNA MER2_type 707 842 -2186 4553 73 3 19 chr6 104975056 104975685 -84303869 + L1PA7 LINE L1 5532 6150 -4 5363 149 121 37 chr6 104975685 104975898 -84303656 + Tigger3b DNA MER2_type 842 1231 0 225 0 0 0 chr6 104976523 104976548 -84303006 + (TA)n Simple_repeat Simple_repeat 2 26 0 1884 133 0 4 chr6 104976548 104976827 -84302727 - AluSg SINE Alu -28 282 5 29 28 0 0 chr6 104977472 104977508 -84302046 + AT_rich Low_complexity Low_complexity 1 36 0 1184 276 84 48 chr6 104977727 104978149 -84301405 - L1MD3 LINE L1 -10 7985 7537 2309 74 10 0 chr6 104978149 104978445 -84301109 - AluY SINE Alu -12 299 1 1184 276 84 48 chr6 104978445 104978584 -84300970 - L1MD3 LINE L1 -458 7537 7404 2508 216 45 101 chr6 104978591 104979510 -84300044 - L1MC4a LINE L1 -818 6990 6124 21 57 0 0 chr6 104980408 104980443 -84299111 + AT_rich Low_complexity Low_complexity 1 35 0 732 243 12 0 chr6 104981026 104981199 -84298355 - MER5B DNA MER1_type -2 176 2 8891 239 38 20 chr6 104981277 104982132 -84297422 - L1PA16 LINE L1 -9 7595 6757 1638 156 95 20 chr6 104982132 104982479 -84297075 + THE1C LTR MaLR 1 373 -2 8891 239 38 20 chr6 104982479 104984867 -84294687 - L1PA16 LINE L1 -847 6757 4414 541 113 0 0 chr6 104984867 104984947 -84294607 - MADE1 DNA Mariner 0 80 1 8891 239 38 20 chr6 104984947 104985820 -84293734 - L1PA16 LINE L1 -3190 4414 3558 2077 104 14 0 chr6 104985820 104986117 -84293437 + AluY SINE Alu 1 301 -10 8891 239 38 20 chr6 104986117 104986714 -84292840 - L1PA16 LINE L1 -4046 3558 2973 222 37 0 0 chr6 104986714 104986741 -84292813 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8891 239 38 20 chr6 104986741 104987212 -84292342 - L1PA16 LINE L1 -4631 2973 2182 413 270 105 57 chr6 104987834 104988223 -84291331 - L1PA16 LINE L1 -7172 409 2 1071 217 37 80 chr6 104988416 104988881 -84290673 - LTR56 LTR ERV1 0 445 1 507 363 75 42 chr6 104990314 104990902 -84288652 - L2 LINE L2 0 3313 2696 24 53 0 0 chr6 104990922 104990960 -84288594 + AT_rich Low_complexity Low_complexity 1 38 0 363 277 56 77 chr6 104991214 104991409 -84288145 + MLT1J LTR MaLR 291 481 -30 198 0 0 0 chr6 104991774 104991796 -84287758 + (T)n Simple_repeat Simple_repeat 1 22 0 1478 108 10 5 chr6 105042084 105042288 -84237266 - AluSq SINE Alu -106 207 3 2078 113 0 0 chr6 105042862 105043155 -84236399 - AluSc SINE Alu -16 293 1 470 257 0 18 chr6 105043194 105043303 -84236251 - MIR SINE MIR -112 150 44 2152 96 0 23 chr6 105043319 105043621 -84235933 - AluSg SINE Alu -15 295 1 27 0 0 0 chr6 105044927 105044954 -84234600 + AT_rich Low_complexity Low_complexity 1 27 0 207 296 134 7 chr6 105045237 105045379 -84234175 - MIR SINE MIR -6 256 97 28 29 0 0 chr6 105045735 105045770 -84233784 + AT_rich Low_complexity Low_complexity 1 35 0 356 0 23 0 chr6 105046399 105046443 -84233111 + (CA)n Simple_repeat Simple_repeat 2 46 0 233 322 140 47 chr6 105049113 105049327 -84230227 + MIR SINE MIR 29 262 0 24 53 0 0 chr6 105049562 105049600 -84229954 + AT_rich Low_complexity Low_complexity 1 38 0 199 289 89 44 chr6 105049653 105049788 -84229766 + L2 LINE L2 3044 3184 -129 741 290 68 16 chr6 105049917 105050165 -84229389 - MIR SINE MIR -1 261 1 452 320 86 41 chr6 105050510 105050707 -84228847 + MIR SINE MIR 49 254 -8 260 303 35 41 chr6 105050861 105051006 -84228548 - L2 LINE L2 -77 3236 3093 193 350 122 20 chr6 105051145 105051342 -84228212 + L2 LINE L2 2297 2513 -801 681 338 75 64 chr6 105051412 105052069 -84227485 - L2 LINE L2 -498 2816 2153 852 277 59 12 chr6 105052086 105052339 -84227215 - LTR16C LTR ERVL -1 490 226 775 167 74 12 chr6 105052342 105052504 -84227050 - L1MA10 LINE L1 -7 6327 6156 1239 185 95 43 chr6 105052516 105053054 -84226500 + L1MB1 LINE L1 5430 6036 -132 4878 132 20 25 chr6 105053054 105053912 -84225642 - L1PA13 LINE L1 0 6163 5282 198 0 0 0 chr6 105053912 105053934 -84225620 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 4878 132 20 25 chr6 105053934 105054306 -84225248 - L1PA13 LINE L1 -881 5282 4910 1239 185 95 43 chr6 105054306 105054434 -84225120 + L1MB1 LINE L1 6036 6156 -12 435 154 8 103 chr6 105054657 105054774 -84224780 - MER53 DNA DNA -83 106 1 227 200 0 0 chr6 105056230 105056280 -84223274 + A-rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr6 105056387 105056412 -84223142 + AT_rich Low_complexity Low_complexity 1 25 0 2078 169 22 0 chr6 105057267 105057623 -84221931 + THE1B LTR MaLR 1 364 0 418 309 142 20 chr6 105057981 105058327 -84221227 + LTR33 LTR ERVL 121 508 -13 394 292 91 69 chr6 105058444 105058852 -84220702 - L1M4 LINE L1 -3528 2618 2202 479 255 138 22 chr6 105058862 105059093 -84220461 - MIR SINE MIR 0 262 5 39 22 0 0 chr6 105059310 105059356 -84220198 + AT_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr6 105059594 105059629 -84219925 + AT_rich Low_complexity Low_complexity 1 35 0 309 187 0 0 chr6 105060080 105060155 -84219399 + (TA)n Simple_repeat Simple_repeat 2 76 0 317 320 256 6 chr6 105061411 105061723 -84217831 - L2 LINE L2 -2234 1080 691 292 258 0 48 chr6 105062663 105062787 -84216767 - Charlie7 DNA MER1_type 0 2612 2495 685 279 61 0 chr6 105062921 105063086 -84216468 + MER58A DNA MER1_type 1 175 -49 888 199 47 0 chr6 105064115 105064286 -84215268 - MER58A DNA MER1_type -1 223 45 22 0 0 0 chr6 105065803 105065825 -84213729 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 105066378 105066398 -84213156 + (TAA)n Simple_repeat Simple_repeat 3 22 0 2250 80 3 0 chr6 105066401 105066687 -84212867 - AluY SINE Alu -24 287 1 16565 172 25 43 chr6 105066723 105069261 -84210293 + L1MA1 LINE L1 16 2562 -5003 521 99 0 0 chr6 105069261 105069342 -84210212 - Alu SINE Alu -2 308 228 16565 172 25 43 chr6 105069342 105070031 -84209523 + L1MA1 LINE L1 2562 3262 -4303 1668 168 64 14 chr6 105070034 105070379 -84209175 + THE1C LTR MaLR 1 362 -13 8777 191 16 32 chr6 105070382 105072747 -84206807 + L1MA1 LINE L1 3260 5586 -1979 6255 144 35 14 chr6 105072745 105074061 -84205493 + L1MA1 LINE L1 5811 7181 -540 * 2150 119 0 3 chr6 105074061 105074363 -84205191 - AluSg SINE Alu -9 301 1 6255 144 35 14 chr6 105074363 105074916 -84204638 + L1MA1 LINE L1 7181 7721 0 197 260 174 9 chr6 105075268 105075384 -84204170 - MIR3 SINE MIR -16 192 58 276 143 0 0 chr6 105075492 105075548 -84204006 + (TG)n Simple_repeat Simple_repeat 1 56 0 349 310 125 74 chr6 105077115 105077618 -84201936 + MLT1H LTR MaLR 5 533 -16 882 156 11 6 chr6 105077927 105078106 -84201448 + CT-rich Low_complexity Low_complexity 1 180 0 285 29 0 0 chr6 105078107 105078141 -84201413 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 590 182 36 0 chr6 105078141 105078251 -84201303 - AluSg/x SINE Alu -22 288 175 1360 156 18 0 chr6 105078251 105078469 -84201085 - AluSq SINE Alu -91 222 1 1586 220 49 6 chr6 105078780 105079130 -84200424 + MLT1A1 LTR MaLR 1 365 0 1081 253 132 42 chr6 105079329 105079807 -84199747 + LTR33 LTR ERVL 1 521 0 22 70 0 0 chr6 105079955 105079998 -84199556 + AT_rich Low_complexity Low_complexity 1 43 0 315 322 70 43 chr6 105080103 105080360 -84199194 + HAL1b LINE L1 182 454 -894 1663 163 53 51 chr6 105080360 105080734 -84198820 + THE1C LTR MaLR 1 375 0 315 322 70 43 chr6 105080734 105080849 -84198705 + HAL1b LINE L1 454 564 -784 1947 145 0 14 chr6 105081554 105081851 -84197703 + AluSx SINE Alu 1 293 -19 300 260 29 0 chr6 105082093 105082197 -84197357 + (TA)n Simple_repeat Simple_repeat 1 107 0 380 289 101 64 chr6 105082199 105082795 -84196759 + L1M4 LINE L1 2652 3269 -2877 1283 308 141 23 chr6 105083345 105084309 -84195245 - L2 LINE L2 0 3313 2238 1983 107 36 0 chr6 105084792 105085073 -84194481 - AluSx SINE Alu -8 304 14 294 29 0 0 chr6 105085327 105085362 -84194192 + (TA)n Simple_repeat Simple_repeat 1 35 0 322 271 73 0 chr6 105087118 105087214 -84192340 + MIR SINE MIR 147 249 -13 23 33 0 0 chr6 105088309 105088339 -84191215 + AT_rich Low_complexity Low_complexity 1 30 0 229 264 138 58 chr6 105088559 105088646 -84190908 + L2 LINE L2 3187 3280 -33 1124 248 147 28 chr6 105088778 105089201 -84190353 - MLT1D LTR MaLR -2 503 31 250 349 126 13 chr6 105091813 105092203 -84187351 + L1MC/D LINE L1 5256 5689 -2119 185 182 0 45 chr6 105092320 105092386 -84187168 + (TAAA)n Simple_repeat Simple_repeat 1 63 0 205 255 0 20 chr6 105092590 105092641 -84186913 + (CA)n Simple_repeat Simple_repeat 2 51 0 21 57 0 0 chr6 105092677 105092712 -84186842 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr6 105093170 105093209 -84186345 + AT_rich Low_complexity Low_complexity 1 39 0 25 65 0 0 chr6 105093529 105093575 -84185979 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr6 105093755 105093784 -84185770 + AT_rich Low_complexity Low_complexity 1 29 0 354 279 88 7 chr6 105093832 105093979 -84185575 + MIR SINE MIR 104 262 0 208 236 18 0 chr6 105096038 105096148 -84183406 + GA-rich Low_complexity Low_complexity 2 113 0 290 297 250 7 chr6 105096166 105096314 -84183240 + MER5A DNA MER1_type 6 189 0 13141 192 71 8 chr6 105097141 105102643 -84176911 - L1PBa LINE L1 -1007 5855 6 401 313 52 0 chr6 105102702 105102836 -84176718 + MER5A DNA MER1_type 1 141 -48 213 323 63 70 chr6 105102734 105102892 -84176662 - MER5A DNA MER1_type -23 166 10 * 1106 194 27 143 chr6 105104862 105105275 -84174279 + MLT1A1 LTR MaLR 1 365 0 1402 193 48 78 chr6 105105366 105105740 -84173814 - MER89 LTR ERV1 0 559 197 509 146 22 0 chr6 105105712 105105801 -84173753 - MER89 LTR ERV1 -468 91 1 * 7183 186 44 60 chr6 105105960 105105991 -84173563 + LTR8A-int LTR ERV1 3717 3747 -2516 2064 134 23 0 chr6 105105991 105106170 -84173384 - AluSp SINE Alu 0 313 123 282 87 0 0 chr6 105106170 105106216 -84173338 + (TA)n Simple_repeat Simple_repeat 2 47 0 2064 134 23 0 chr6 105106216 105106342 -84173212 - AluSp SINE Alu -190 123 1 7183 186 44 60 chr6 105106342 105107300 -84172254 + LTR8A-int LTR ERV1 3747 4719 -1544 1792 164 7 13 chr6 105107300 105107599 -84171955 - AluJb SINE Alu -13 299 3 7183 186 44 60 chr6 105107599 105107755 -84171799 + LTR8A-int LTR ERV1 4719 4876 -1387 249 57 0 0 chr6 105107755 105107790 -84171764 + (TTG)n Simple_repeat Simple_repeat 3 37 0 7183 186 44 60 chr6 105107790 105108673 -84170881 + LTR8A-int LTR ERV1 4876 6184 -79 2645 25 0 6 chr6 105108673 105108987 -84170567 + AluYb8 SINE Alu 1 312 -6 7183 186 44 60 chr6 105108987 105109066 -84170488 + LTR8A-int LTR ERV1 6184 6263 0 2062 201 68 100 chr6 105109081 105109743 -84169811 + LTR8A LTR ERV1 34 674 -53 234 91 0 0 chr6 105109819 105109852 -84169702 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2887 160 7 0 chr6 105110377 105110827 -84168727 + MER1A DNA MER1_type 77 529 0 232 342 34 8 chr6 105112020 105112137 -84167417 + L1MC/D LINE L1 5705 5824 -1984 1909 136 7 0 chr6 105112223 105112544 -84167010 - AluSg SINE Alu 0 323 1 1661 241 85 62 chr6 105112777 105113066 -84166488 - L1ME2 LINE L1 -10 6223 5942 1567 131 80 75 chr6 105113066 105113439 -84166115 - THE1C LTR MaLR 0 375 1 1661 241 85 62 chr6 105113439 105113609 -84165945 - L1ME2 LINE L1 -291 5942 5777 399 41 0 0 chr6 105113609 105113658 -84165896 + (TA)n Simple_repeat Simple_repeat 2 50 0 1661 241 85 62 chr6 105113658 105114033 -84165521 - L1ME2 LINE L1 -456 5777 5372 264 59 0 0 chr6 105114036 105114070 -84165484 + (TA)n Simple_repeat Simple_repeat 2 35 0 1823 119 20 40 chr6 105114070 105114373 -84165181 - AluSq SINE Alu -16 297 1 1389 271 85 38 chr6 105114375 105115309 -84164245 - L1ME2 LINE L1 -872 5343 4366 367 259 13 25 chr6 105115558 105115716 -84163838 + (TA)n Simple_repeat Simple_repeat 1 156 0 26 0 0 0 chr6 105115837 105115863 -84163691 + AT_rich Low_complexity Low_complexity 1 26 0 1147 284 66 49 chr6 105117132 105117889 -84161665 - L1ME2 LINE L1 -4496 1900 1131 2306 142 45 45 chr6 105117891 105118314 -84161240 + Tigger2a DNA MER2_type 2 424 -10 1606 286 118 28 chr6 105118329 105119301 -84160253 - L1ME2 LINE L1 -5289 1107 48 4760 174 35 35 chr6 105120062 105121043 -84158511 + L1MC1 LINE L1 5352 6332 -1 27 0 0 0 chr6 105121047 105121074 -84158480 + AT_rich Low_complexity Low_complexity 1 27 0 208 292 85 31 chr6 105121413 105121543 -84158011 + MIR SINE MIR 120 256 -6 255 288 0 0 chr6 105121555 105121614 -84157940 + (CAT)n Simple_repeat Simple_repeat 2 60 0 2247 113 33 30 chr6 105122673 105123036 -84156518 - THE1B LTR MaLR 0 364 1 1390 225 180 31 chr6 105123136 105123585 -84155969 - MLT2B1 LTR ERVL 0 520 5 2604 112 5 3 chr6 105123585 105123959 -84155595 + THE1C LTR MaLR 1 375 0 9012 125 36 59 chr6 105123959 105125576 -84153978 + THE1C-int LTR MaLR 1 1580 0 2426 116 3 26 chr6 105125578 105125958 -84153596 + THE1C LTR MaLR 3 373 -2 1559 161 65 7 chr6 105126881 105127172 -84152382 + AluSx SINE Alu 1 308 -4 666 272 122 39 chr6 105127193 105127700 -84151854 + L1ME4a LINE L1 5562 6110 -11 1967 94 64 0 chr6 105127883 105128204 -84151350 - AluSp SINE Alu 0 338 1 186 43 0 0 chr6 105129525 105129548 -84150006 + (A)n Simple_repeat Simple_repeat 1 23 0 285 274 145 0 chr6 105129973 105130038 -84149516 - L2 LINE L2 0 3313 3259 207 0 0 0 chr6 105130038 105130061 -84149493 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 285 274 145 0 chr6 105130061 105130112 -84149442 - L2 LINE L2 -54 3259 3180 23 68 0 0 chr6 105131727 105131771 -84147783 + AT_rich Low_complexity Low_complexity 1 44 0 1946 92 12 67 chr6 105131836 105132163 -84147391 - AluY SINE Alu -2 309 1 251 294 92 42 chr6 105132253 105132515 -84147039 - L1MC/D LINE L1 -1961 5847 5573 239 369 47 35 chr6 105132727 105133071 -84146483 + L2 LINE L2 2234 2581 -733 388 222 198 25 chr6 105133396 105133558 -84145996 + L2 LINE L2 3115 3304 -9 309 323 90 20 chr6 105133710 105133911 -84145643 - L1MEc LINE L1 -4730 1580 1366 335 266 21 0 chr6 105133927 105134021 -84145533 + CT-rich Low_complexity Low_complexity 1 96 0 514 254 77 42 chr6 105134026 105134313 -84145241 - L1MEc LINE L1 -4863 1256 960 328 290 72 43 chr6 105134350 105134557 -84144997 - L1MEc LINE L1 -5219 900 688 5400 159 45 11 chr6 105134561 105136464 -84143090 - L1PB2 LINE L1 -2 6149 4199 405 121 0 0 chr6 105136460 105136526 -84143028 + L1PBa LINE L1 2594 2659 -4204 * 1627 134 17 65 chr6 105136593 105136930 -84142624 - AluSx SINE Alu 0 329 7 2541 190 25 46 chr6 105137195 105137721 -84141833 + MLT2B2 LTR ERVL 1 515 0 758 239 31 0 chr6 105138040 105138199 -84141355 - FRAM SINE Alu -11 165 2 297 151 0 0 chr6 105138543 105138596 -84140958 + (CA)n Simple_repeat Simple_repeat 2 54 0 306 323 79 6 chr6 105140466 105140630 -84138924 + MIR SINE MIR 10 185 -77 271 346 30 13 chr6 105140743 105140980 -84138574 + L1ME3A LINE L1 4942 5182 -964 * 963 324 87 4 chr6 105140975 105141459 -84138095 + L1ME3A LINE L1 5440 5963 -207 308 250 121 26 chr6 105141718 105141834 -84137720 + LTR33 LTR ERVL 1 127 -394 393 319 123 17 chr6 105141908 105142143 -84137411 + LTR33 LTR ERVL 262 521 0 23 0 0 0 chr6 105143475 105143498 -84136056 + AT_rich Low_complexity Low_complexity 1 23 0 11155 159 22 5 chr6 105143575 105146359 -84133195 - L1PA13 LINE L1 -2 6161 3338 959 177 23 0 chr6 105146359 105146579 -84132975 + L1PA13 LINE L1 3110 3334 -2812 2433 106 5 8 chr6 105146651 105147008 -84132546 - L1PB1 LINE L1 -1 6150 5793 262 13 0 107 chr6 105147008 105147083 -84132471 + (TA)n Simple_repeat Simple_repeat 1 67 0 2433 106 5 8 chr6 105147083 105147094 -84132460 - L1PB1 LINE L1 -358 5793 5783 264 79 0 79 chr6 105147095 105147171 -84132383 + (TA)n Simple_repeat Simple_repeat 1 70 0 282 259 0 37 chr6 105147175 105147283 -84132271 + L1MC4 LINE L1 6614 6717 -1325 * 941 174 0 6 chr6 105147272 105147444 -84132110 - L1P LINE L1 -2466 3680 3510 314 244 58 12 chr6 105147458 105147544 -84132010 - L1MC4 LINE L1 -1339 6703 6614 308 208 0 109 chr6 105147462 105147563 -84131991 + L1MC4 LINE L1 6614 6703 -1339 * 224 172 0 69 chr6 105147569 105147656 -84131898 + (TATATG)n Simple_repeat Simple_repeat 6 86 0 344 22 0 22 chr6 105147659 105147705 -84131849 + (TA)n Simple_repeat Simple_repeat 2 46 0 252 111 0 0 chr6 105147819 105147864 -84131690 + (GA)n Simple_repeat Simple_repeat 1 45 0 696 242 124 71 chr6 105148176 105148386 -84131168 + MER39 LTR ERV1 68 265 -422 2136 127 0 7 chr6 105148386 105148694 -84130860 - AluSc SINE Alu -3 306 1 696 242 124 71 chr6 105148694 105148951 -84130603 + MER39 LTR ERV1 265 687 0 184 342 114 32 chr6 105150026 105150184 -84129370 + MIR3 SINE MIR 37 207 -1 216 345 8 42 chr6 105152435 105152554 -84127000 + L2 LINE L2 2185 2299 -1015 2085 93 65 0 chr6 105153251 105153541 -84126013 - AluSc SINE Alu 0 309 1 2549 94 0 3 chr6 105153905 105154267 -84125287 - L1P5 LINE L1 -419 5732 5372 978 276 137 23 chr6 105155202 105155633 -84123921 - MLT1H LTR MaLR -60 489 10 500 287 55 30 chr6 105155717 105156073 -84123481 + MLT1J2 LTR MaLR 45 437 -11 57 82 0 0 chr6 105156577 105156711 -84122843 + AT_rich Low_complexity Low_complexity 1 134 0 2760 203 28 18 chr6 105157547 105158163 -84121391 - L1MC3 LINE L1 -9 7776 7155 483 281 156 43 chr6 105158903 105159159 -84120395 + L3 LINE CR1 833 1117 -460 2132 207 62 41 chr6 105159359 105160342 -84119212 + Charlie1 DNA MER1_type 46 2760 -1 608 336 81 53 chr6 105160414 105160848 -84118706 + MLT1K LTR MaLR 3 448 -140 2277 108 0 0 chr6 105161076 105161371 -84118183 - AluSx SINE Alu -16 296 2 234 81 0 0 chr6 105161851 105161888 -84117666 + (TG)n Simple_repeat Simple_repeat 2 38 0 314 297 83 28 chr6 105162735 105162880 -84116674 - MER5A DNA MER1_type -1 188 36 384 22 0 0 chr6 105164130 105164175 -84115379 + (TG)n Simple_repeat Simple_repeat 2 46 0 1007 243 126 83 chr6 105167509 105168088 -84111466 - MLT1E1 LTR MaLR 0 654 1 650 225 42 7 chr6 105168305 105168447 -84111107 + MER63 DNA MER1_type 9 781 -281 1689 65 0 19 chr6 105168449 105168665 -84110889 + AluY SINE Alu 86 297 -14 26 74 0 0 chr6 105168931 105168985 -84110569 + AT_rich Low_complexity Low_complexity 1 54 0 2750 185 20 16 chr6 105170132 105170679 -84108875 - MER44D DNA MER2_type 0 605 2 2119 108 0 3 chr6 105171196 105171482 -84108072 + AluSg SINE Alu 2 286 -24 21 0 0 0 chr6 105171482 105171503 -84108051 + AT_rich Low_complexity Low_complexity 1 21 0 305 204 0 0 chr6 105171992 105172046 -84107508 + L2 LINE L2 3163 3216 -56 1750 159 10 3 chr6 105173665 105173955 -84105599 - AluSq SINE Alu -20 293 2 1658 314 184 23 chr6 105173977 105174614 -84104940 + L2 LINE L2 1962 2495 -818 1973 148 146 11 chr6 105174614 105174991 -84104563 + MSTA LTR MaLR 1 428 0 1658 314 184 23 chr6 105174991 105175508 -84104046 + L2 LINE L2 2495 3313 0 32 43 0 0 chr6 105175596 105175642 -84103912 + AT_rich Low_complexity Low_complexity 1 46 0 1852 200 46 0 chr6 105175958 105176308 -84103246 + MSTB LTR MaLR 1 366 -60 1245 262 144 56 chr6 105176389 105177140 -84102414 - L2 LINE L2 -66 3247 2405 742 342 87 40 chr6 105177184 105177756 -84101798 + HERVL LTR ERVL 2389 2987 -2084 310 239 0 0 chr6 105178088 105178155 -84101399 + HERVL LTR ERVL 3410 3476 -2288 1017 326 51 30 chr6 105178425 105178988 -84100566 + HERVL LTR ERVL 4190 4842 -922 388 310 135 62 chr6 105179173 105179544 -84100010 - L1 LINE L1 -2409 3737 3340 4129 215 50 33 chr6 105179745 105181155 -84098399 - L1M3 LINE L1 -539 5629 4188 2014 202 8 5 chr6 105181157 105181543 -84098011 + L1MB1 LINE L1 5728 6114 -75 469 207 10 7 chr6 105181547 105181649 -84097905 - L1M4 LINE L1 -1162 4984 4888 777 222 19 37 chr6 105181677 105181893 -84097661 + L1MA10 LINE L1 6120 6331 -3 646 298 46 25 chr6 105182127 105182365 -84097189 - MLT1H LTR MaLR -229 320 78 191 61 30 0 chr6 105182369 105182402 -84097152 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 327 272 75 119 chr6 105182428 105182788 -84096766 - MLT1H-int LTR MaLR 0 1371 1028 854 232 85 49 chr6 105183179 105183515 -84096039 + MLT1A1 LTR MaLR 1 453 -4 321 270 40 2 chr6 105184082 105184194 -84095360 - MLT1H LTR MaLR 0 654 466 547 293 90 47 chr6 105184257 105184469 -84095085 - MLT1H LTR MaLR -225 324 104 2053 118 7 3 chr6 105184469 105184756 -84094798 + AluSq SINE Alu 1 288 -25 561 316 21 11 chr6 105184844 105185031 -84094523 + MIR SINE MIR 17 205 -57 234 373 27 0 chr6 105185061 105185171 -84094383 + L2 LINE L2 1797 1909 -1405 1722 151 3 14 chr6 105185808 105186124 -84093430 + AluJb SINE Alu 1 313 0 32 26 0 0 chr6 105186869 105186908 -84092646 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 105187164 105187185 -84092369 + AT_rich Low_complexity Low_complexity 1 21 0 1786 219 104 75 chr6 105188555 105189347 -84090207 - LTR1B LTR ERV1 0 1020 1 21 36 0 0 chr6 105290584 105290612 -83988942 + GC_rich Low_complexity Low_complexity 1 28 0 35 0 0 0 chr6 105290640 105290675 -83988879 + GC_rich Low_complexity Low_complexity 1 35 0 31 68 0 0 chr6 105290769 105290828 -83988726 + GC_rich Low_complexity Low_complexity 1 59 0 1414 264 30 26 chr6 105292102 105292599 -83986955 - L1MB5 LINE L1 -83 6091 5593 2329 103 0 0 chr6 105292609 105292921 -83986633 - AluSx SINE Alu 0 312 1 334 321 43 14 chr6 105293128 105293268 -83986286 + MIR SINE MIR 37 180 -82 237 273 14 35 chr6 105294021 105294164 -83985390 + (CCCCG)n Simple_repeat Simple_repeat 5 144 0 284 240 136 13 chr6 105296480 105296634 -83982920 - L2 LINE L2 -329 2984 2812 240 226 83 36 chr6 105296708 105296792 -83982762 - L2 LINE L2 -661 2653 2566 977 207 0 0 chr6 105298119 105298283 -83981271 + FRAM SINE Alu 1 160 -16 1518 75 0 0 chr6 105298402 105298589 -83980965 - AluSg/x SINE Alu -14 298 112 2156 117 13 3 chr6 105298630 105298937 -83980617 - AluSx SINE Alu -2 310 1 1860 174 3 0 chr6 105300334 105300639 -83978915 + AluJb SINE Alu 1 306 -6 2115 106 3 3 chr6 105300973 105301275 -83978279 + AluSx SINE Alu 1 302 -10 258 326 0 37 chr6 105301589 105301724 -83977830 + L2 LINE L2 2966 3095 -177 2342 88 0 3 chr6 105302809 105303117 -83976437 - AluY SINE Alu -4 307 1 359 138 17 43 chr6 105304027 105304143 -83975411 + GA-rich Low_complexity Low_complexity 1 113 0 299 290 39 32 chr6 105304622 105304777 -83974777 + L1ME3 LINE L1 6005 6160 -2 513 276 81 8 chr6 105305257 105305501 -83974053 - L1MB8 LINE L1 -2 6182 5897 2051 44 0 0 chr6 105305525 105305773 -83973781 + AluY SINE Alu 1 248 -63 1788 157 7 0 chr6 105306247 105306534 -83973020 + AluJo SINE Alu 1 289 -23 390 129 0 0 chr6 105306570 105306632 -83972922 + (TTCA)n Simple_repeat Simple_repeat 2 63 0 1609 170 20 29 chr6 105307451 105307586 -83971968 + AluJb SINE Alu 1 136 -176 2111 115 3 0 chr6 105307586 105307890 -83971664 + AluSp SINE Alu 1 305 -8 1609 170 20 29 chr6 105307890 105308060 -83971494 + AluJb SINE Alu 136 303 -9 3967 189 16 46 chr6 105308992 105309281 -83970273 - L1MB8 LINE L1 -470 5713 5417 2193 115 3 0 chr6 105309281 105309585 -83969969 - AluSx SINE Alu -7 305 1 3967 189 16 46 chr6 105309585 105310785 -83968769 - L1MB8 LINE L1 -766 5417 4270 359 280 95 10 chr6 105310936 105311136 -83968418 - L1MB7 LINE L1 -15 6169 5953 2138 91 7 0 chr6 105313078 105313364 -83966190 - AluSg SINE Alu -22 288 1 1885 126 22 0 chr6 105313371 105313648 -83965906 - AluJo SINE Alu -15 297 15 868 159 9 65 chr6 105313966 105314075 -83965479 + Ricksha DNA DNA 3020 3111 -140 2270 83 3 0 chr6 105314075 105314375 -83965179 - AluY SINE Alu -8 303 3 868 159 9 65 chr6 105314375 105314497 -83965057 + Ricksha DNA DNA 3111 3238 -13 270 229 0 0 chr6 105314792 105314862 -83964692 + G-rich Low_complexity Low_complexity 1 70 0 375 283 145 34 chr6 105316346 105316753 -83962801 - MLT1C LTR MaLR -15 452 1 2132 85 0 54 chr6 105318160 105318477 -83961077 + AluSx SINE Alu 1 300 -12 1410 146 0 5 chr6 105318803 105319015 -83960539 + AluJo SINE Alu 86 296 -16 2083 97 28 0 chr6 105319312 105319475 -83960079 - AluSx SINE Alu -14 298 122 252 0 0 0 chr6 105319475 105319503 -83960051 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2083 97 28 0 chr6 105319503 105319629 -83959925 - AluSx SINE Alu -190 122 1 2023 107 21 0 chr6 105320564 105320844 -83958710 - AluSx SINE Alu -8 304 19 633 267 115 7 chr6 105322190 105322527 -83957027 - MLT1C LTR MaLR -6 461 108 620 55 0 0 chr6 105323229 105323302 -83956252 - AluS SINE Alu -225 87 15 3817 193 50 24 chr6 105323302 105323963 -83955591 - Ricksha DNA DNA -1010 2236 1545 2145 118 3 0 chr6 105323963 105324260 -83955294 + AluSx SINE Alu 1 298 -14 3817 193 50 24 chr6 105324260 105324473 -83955081 - Ricksha DNA DNA -1701 1545 1339 677 177 81 11 chr6 105324881 105325067 -83954487 + MLT1C LTR MaLR 7 205 -262 180 200 0 0 chr6 105325067 105325107 -83954447 + (CA)n Simple_repeat Simple_repeat 2 41 0 362 270 6 0 chr6 105325125 105325303 -83954251 + (CA)n Simple_repeat Simple_repeat 2 180 0 465 257 0 0 chr6 105325334 105325513 -83954041 + (CA)n Simple_repeat Simple_repeat 2 180 0 255 255 0 0 chr6 105325568 105325674 -83953880 + (CA)n Simple_repeat Simple_repeat 2 107 0 252 280 0 40 chr6 105325674 105325774 -83953780 + MLT1C LTR MaLR 188 283 -184 1865 89 0 0 chr6 105325865 105326112 -83953442 - AluSg SINE Alu -63 247 1 1294 214 54 51 chr6 105326124 105326553 -83953001 - L1MB7 LINE L1 -9 6175 5746 264 190 17 0 chr6 105326553 105326611 -83952943 + MER96B DNA MER1_type? 336 394 -23 1977 113 0 7 chr6 105327384 105327666 -83951888 + AluSg SINE Alu 17 296 -14 2319 75 7 0 chr6 105327666 105327961 -83951593 + AluSc SINE Alu 1 297 -12 644 304 95 24 chr6 105327962 105328340 -83951214 + MLT1J LTR MaLR 107 511 0 863 142 0 8 chr6 105328467 105328601 -83950953 - FLAM_C SINE Alu 0 133 1 413 326 72 20 chr6 105328602 105328906 -83950648 - L1ME3A LINE L1 -293 5877 5558 384 213 43 0 chr6 105328927 105329021 -83950533 - MER58B DNA MER1_type 0 341 244 * 643 230 35 11 chr6 105329019 105329193 -83950361 - MER58A DNA MER1_type -46 178 1 247 249 131 6 chr6 105329195 105329367 -83950187 - L1ME3A LINE L1 -662 5502 5305 785 236 63 112 chr6 105329440 105329965 -83949589 - MLT1D LTR MaLR -5 500 2 239 250 57 34 chr6 105330176 105330264 -83949290 - MIR SINE MIR -77 185 96 28 0 0 0 chr6 105331485 105331513 -83948041 + GC_rich Low_complexity Low_complexity 1 28 0 2254 63 26 7 chr6 105332568 105332871 -83946683 - AluSq SINE Alu -4 309 1 1469 143 56 28 chr6 105332874 105333160 -83946394 - AluJo SINE Alu -18 294 1 435 207 24 0 chr6 105333894 105333976 -83945578 - FRAM/FAM SINE Alu -92 84 1 494 360 23 0 chr6 105334048 105334309 -83945245 - L1M4 LINE L1 -3020 3126 2860 383 286 48 0 chr6 105334310 105334457 -83945097 - L1M4 LINE L1 -3317 2829 2676 947 76 0 0 chr6 105334457 105334576 -83944978 - AluSq/x SINE Alu -194 119 1 1626 87 0 26 chr6 105334836 105335065 -83944489 + AluSq SINE Alu 87 309 -4 214 322 96 17 chr6 105335076 105335191 -83944363 - MIR SINE MIR -67 141 18 2242 100 3 13 chr6 105335953 105336262 -83943292 + AluSx SINE Alu 1 306 -6 2232 114 0 0 chr6 105337208 105337515 -83942039 + AluSx SINE Alu 1 307 -5 279 79 0 0 chr6 105337517 105337555 -83941999 + (GGGAGA)n Simple_repeat Simple_repeat 5 42 0 195 100 0 0 chr6 105338068 105338098 -83941456 + (A)n Simple_repeat Simple_repeat 1 30 0 201 121 0 0 chr6 105338950 105338983 -83940571 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 2104 104 0 32 chr6 105339360 105339668 -83939886 - AluSc SINE Alu -11 298 1 1562 176 23 16 chr6 105339671 105339977 -83939577 - AluJo SINE Alu -4 308 1 251 261 0 0 chr6 105340057 105340122 -83939432 + C-rich Low_complexity Low_complexity 4 68 0 2259 114 0 0 chr6 105340239 105340546 -83939008 - AluSg SINE Alu -3 307 1 217 129 0 59 chr6 105340746 105340831 -83938723 + (CGGTG)n Simple_repeat Simple_repeat 5 84 0 397 306 190 11 chr6 105340863 105341147 -83938407 - HAL1 LINE L1 -1557 950 616 424 88 0 0 chr6 105342466 105342523 -83937031 + Alu SINE Alu 238 294 -16 194 153 17 0 chr6 105342523 105342582 -83936972 + (TA)n Simple_repeat Simple_repeat 1 60 0 304 236 47 28 chr6 105342588 105342694 -83936860 - L1ME3A LINE L1 -13 6157 6050 253 239 22 54 chr6 105343050 105343142 -83936412 - L1ME3A LINE L1 -846 5513 5425 * 1652 257 52 29 chr6 105343136 105343150 -83936404 - L1ME1 LINE L1 -10 6334 6322 2056 125 0 20 chr6 105343150 105343455 -83936099 - AluSx SINE Alu -13 299 1 1652 257 52 29 chr6 105343455 105343631 -83935923 - L1ME1 LINE L1 -22 6322 6152 2224 98 0 3 chr6 105343631 105343928 -83935626 - AluSc SINE Alu -13 296 1 1652 257 52 29 chr6 105343928 105344452 -83935102 - L1ME1 LINE L1 -192 6152 5585 273 257 14 0 chr6 105345387 105345461 -83934093 - MER45 DNA AcHobo 0 1581 1507 2162 97 28 0 chr6 105345462 105345752 -83933802 + AluSg SINE Alu 1 298 -12 314 209 173 0 chr6 105345754 105345864 -83933690 - MER45 DNA AcHobo -1450 131 3 243 0 0 0 chr6 105346346 105346373 -83933181 + (CTGGGG)n Simple_repeat Simple_repeat 3 29 0 244 295 53 0 chr6 105350318 105350413 -83929141 + MIR SINE MIR 36 135 -73 2175 84 0 3 chr6 105353263 105353569 -83925985 - AluSg SINE Alu 0 305 1 849 153 0 0 chr6 105356307 105356438 -83923116 - AluJb SINE Alu -16 296 166 2121 98 3 22 chr6 105358015 105358330 -83921224 + AluSg SINE Alu 1 309 -1 759 211 70 14 chr6 105358549 105358762 -83920792 - MLT1C LTR MaLR -236 231 7 1978 100 6 35 chr6 105360475 105360812 -83918742 + AluSq SINE Alu 6 313 0 181 209 70 0 chr6 105361631 105361789 -83917765 + (CA)n Simple_repeat Simple_repeat 2 170 0 425 238 65 0 chr6 105361811 105361979 -83917575 + (CA)n Simple_repeat Simple_repeat 1 179 0 397 159 48 16 chr6 105362011 105362262 -83917292 + (CA)n Simple_repeat Simple_repeat 1 259 0 598 224 113 70 chr6 105362266 105362619 -83916935 + L1MC4 LINE L1 6649 7065 -961 2018 134 0 3 chr6 105362785 105363083 -83916471 + AluSx SINE Alu 2 298 -14 205 161 32 48 chr6 105367539 105367601 -83911953 + (CCCCAG)n Simple_repeat Simple_repeat 1 61 0 724 196 141 7 chr6 105368522 105368752 -83910802 - MLT1C LTR MaLR -198 269 1 285 289 94 16 chr6 105368865 105368993 -83910561 - MIR SINE MIR -79 183 46 195 317 33 0 chr6 105370703 105370763 -83908791 - MIR SINE MIR -121 141 80 182 265 82 0 chr6 105371383 105371432 -83908122 - MIR SINE MIR -102 160 108 291 294 164 11 chr6 105372844 105373021 -83906533 - MIR SINE MIR -13 249 46 2274 101 3 0 chr6 105374835 105375141 -83904413 + AluSq SINE Alu 1 307 -6 375 291 0 0 chr6 105375246 105375332 -83904222 + MIR SINE MIR 71 156 -106 389 253 311 3 chr6 105375586 105375875 -83903679 - L2 LINE L2 -429 2885 2508 3466 193 35 32 chr6 105375979 105376025 -83903529 - L1 LINE L1 -1903 4243 4199 2399 71 0 0 chr6 105376025 105376321 -83903233 - AluY SINE Alu -14 297 2 3466 193 35 32 chr6 105376321 105376340 -83903214 - L1 LINE L1 -1947 4199 4182 2301 96 0 3 chr6 105376340 105376643 -83902911 - AluSx SINE Alu -10 302 1 3466 193 35 32 chr6 105376643 105377427 -83902127 - L1 LINE L1 -1964 4182 3390 1838 82 67 15 chr6 105378202 105378494 -83901060 - AluSx SINE Alu 0 306 1 1180 264 81 8 chr6 105378806 105379188 -83900366 + L1MB5 LINE L1 5765 6174 0 2380 64 0 3 chr6 105379198 105379493 -83900061 + AluY SINE Alu 1 294 -17 557 176 83 0 chr6 105380008 105380116 -83899438 + AluJb SINE Alu 170 286 -26 1890 163 3 7 chr6 105380131 105380437 -83899117 + AluJo SINE Alu 1 305 -7 640 209 96 40 chr6 105381853 105382030 -83897524 - MIR SINE MIR -62 200 14 2200 102 3 0 chr6 105383007 105383302 -83896252 + AluSp SINE Alu 1 296 -17 2109 47 0 4 chr6 105383313 105383568 -83895986 + AluY SINE Alu 2 255 -56 198 0 0 0 chr6 105383568 105383590 -83895964 + (A)n Simple_repeat Simple_repeat 1 22 0 544 130 0 0 chr6 105384897 105384974 -83894580 + AluS SINE Alu 224 300 -9 24 0 0 0 chr6 105386076 105386100 -83893454 + AT_rich Low_complexity Low_complexity 1 24 0 1341 19 25 0 chr6 105386483 105386642 -83892912 + AluY SINE Alu 136 298 -13 293 213 0 0 chr6 105386642 105386703 -83892851 + MER81 DNA DNA 40 100 -14 643 304 28 31 chr6 105386719 105387077 -83892477 - L1MC/D LINE L1 -2037 5771 5415 479 195 0 154 chr6 105387063 105387101 -83892453 - L1ME1 LINE L1 -2 6164 6122 * 2007 124 3 19 chr6 105387101 105387415 -83892139 - AluSx SINE Alu -3 309 1 479 195 0 154 chr6 105387415 105387526 -83892028 - L1ME1 LINE L1 -44 6122 6046 915 154 0 0 chr6 105387526 105387669 -83891885 + FRAM SINE Alu 30 172 -4 672 219 83 61 chr6 105387670 105387898 -83891656 - L1ME1 LINE L1 -113 6053 5821 1380 229 47 9 chr6 105388144 105388484 -83891070 - L1ME1 LINE L1 -407 5759 5407 2255 92 0 7 chr6 105388526 105388831 -83890723 + AluSx SINE Alu 1 303 -9 2426 46 0 17 chr6 105388937 105389239 -83890315 + AluY SINE Alu 1 297 -14 591 131 0 0 chr6 105392433 105392517 -83887037 + AluSc SINE Alu 1 84 -225 2250 85 7 0 chr6 105392517 105392812 -83886742 + AluSc SINE Alu 2 298 -11 242 209 90 0 chr6 105393810 105393877 -83885677 + MER77 LTR ERV1 119 191 -414 2092 140 0 6 chr6 105393877 105394191 -83885363 + AluJo SINE Alu 1 312 0 249 152 45 125 chr6 105394194 105394259 -83885295 + L1MC3 LINE L1 5325 5379 -2429 2334 85 3 25 chr6 105394259 105394578 -83884976 + AluSx SINE Alu 1 312 0 249 152 45 125 chr6 105394578 105394624 -83884930 + L1MC3 LINE L1 5379 5427 -2381 2974 183 166 100 chr6 105394864 105395504 -83884050 + L1MC3 LINE L1 6362 6958 -827 2192 112 3 0 chr6 105395504 105395800 -83883754 + AluSx SINE Alu 1 297 -15 2974 183 166 100 chr6 105395800 105395848 -83883706 + L1MC3 LINE L1 6958 7001 -784 263 284 0 11 chr6 105395848 105395936 -83883618 + MLT1F1 LTR MaLR 24 110 -457 2974 183 166 100 chr6 105395936 105396494 -83883060 + L1MC3 LINE L1 7001 7785 0 244 75 25 0 chr6 105396508 105396548 -83883006 + Alu SINE Alu 10 50 -83 282 367 23 23 chr6 105397409 105397537 -83882017 + MIR SINE MIR 70 197 -65 1562 148 89 0 chr6 105397854 105398111 -83881443 - AluJo SINE Alu -27 285 6 225 276 13 0 chr6 105398252 105398328 -83881226 - L1MC4 LINE L1 -149 7893 7817 273 171 19 0 chr6 105400866 105400928 -83878626 + MIR SINE MIR 61 127 -81 1532 160 93 0 chr6 105406373 105406642 -83872912 + AluJb SINE Alu 1 294 -18 1775 122 50 0 chr6 105407584 105407862 -83871692 - AluSx SINE Alu -20 292 1 2039 122 7 0 chr6 105408830 105409118 -83870436 + AluSx SINE Alu 1 290 -22 436 246 0 27 chr6 105409470 105409653 -83869901 + (ATGGTG)n Simple_repeat Simple_repeat 1 178 0 902 157 8 17 chr6 105409672 105410029 -83869525 + (ATGGTG)n Simple_repeat Simple_repeat 1 354 0 23 0 0 0 chr6 105411646 105411669 -83867885 + GC_rich Low_complexity Low_complexity 1 23 0 223 118 11 75 chr6 105414004 105414097 -83865457 + (TCC)n Simple_repeat Simple_repeat 2 88 0 1772 133 3 48 chr6 105414197 105414513 -83865041 - AluJo SINE Alu -8 304 3 2290 70 0 17 chr6 105417795 105418094 -83861460 - AluY SINE Alu -17 294 1 248 216 39 39 chr6 105418158 105418260 -83861294 + G-rich Low_complexity Low_complexity 2 103 0 530 260 115 24 chr6 105419027 105419317 -83860237 + MSTD LTR MaLR 1 393 -3 213 159 0 0 chr6 105419381 105419425 -83860129 + C-rich Low_complexity Low_complexity 1 44 0 1652 172 28 21 chr6 105421378 105421669 -83857885 - AluJb SINE Alu -18 294 2 613 278 66 0 chr6 105423443 105423655 -83855899 - MER67B LTR ERV1 -301 360 135 180 259 74 0 chr6 105425912 105425966 -83853588 + MER5A DNA MER1_type 77 134 -55 1836 150 77 60 chr6 105426647 105427113 -83852441 - LTR19A LTR ERV1 -12 474 1 366 276 0 0 chr6 105430099 105430262 -83849292 + (TG)n Simple_repeat Simple_repeat 2 164 0 225 210 0 0 chr6 105430323 105430385 -83849169 + (TG)n Simple_repeat Simple_repeat 1 62 0 189 268 42 14 chr6 105431199 105431270 -83848284 + L2 LINE L2 3005 3077 -195 402 318 73 20 chr6 105433297 105433542 -83846012 - L1M4 LINE L1 -2579 3567 3310 913 226 70 53 chr6 105433683 105433884 -83845670 - L1M4 LINE L1 -2848 3298 3102 2184 96 3 16 chr6 105433884 105434196 -83845358 - AluSg SINE Alu -2 308 1 913 226 70 53 chr6 105434196 105434463 -83845091 - L1M4 LINE L1 -3044 3102 2822 802 138 101 75 chr6 105434480 105434639 -83844915 + AluJo SINE Alu 87 249 -63 938 193 144 21 chr6 105434639 105434882 -83844672 - AluJo SINE Alu -39 273 1 343 153 82 24 chr6 105434889 105434974 -83844580 - L1M4 LINE L1 -3364 2782 2693 2930 234 62 17 chr6 105434978 105435987 -83843567 + L1ME LINE L1 3690 4744 -1402 849 167 7 0 chr6 105435990 105436128 -83843426 + FLAM_C SINE Alu 1 139 -4 2387 55 0 3 chr6 105436150 105436477 -83843077 + AluY SINE Alu 1 326 0 386 235 29 10 chr6 105436485 105436587 -83842967 + L1ME LINE L1 5483 5586 -576 2005 121 7 0 chr6 105436593 105436875 -83842679 + AluSx SINE Alu 9 292 -20 217 231 0 0 chr6 105444573 105444625 -83834929 + (CAG)n Simple_repeat Simple_repeat 1 52 0 280 314 52 13 chr6 105449813 105449966 -83829588 - L1MC/D LINE L1 -2074 6128 5970 272 286 45 0 chr6 105450061 105450173 -83829381 - L1MC/D LINE L1 -766 5792 5676 1919 90 76 0 chr6 105450180 105450457 -83829097 - AluSq SINE Alu -15 298 1 298 276 120 26 chr6 105450458 105450650 -83828904 - L1ME3 LINE L1 -54 6108 5899 1675 116 4 25 chr6 105450687 105450928 -83828626 - AluSx SINE Alu -76 236 1 726 290 97 11 chr6 105450950 105451459 -83828095 - L1MDa LINE L1 -3568 2972 2421 1223 106 0 11 chr6 105451589 105451768 -83827786 + AluSg/x SINE Alu 134 310 0 318 365 65 56 chr6 105452076 105452506 -83827048 - L1MDa LINE L1 -5635 895 462 318 148 0 0 chr6 105452648 105452702 -83826852 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 556 308 56 107 chr6 105452797 105453349 -83826205 - L1M4 LINE L1 -1082 5064 4541 2509 68 0 0 chr6 105453511 105453822 -83825732 - AluY SINE Alu 0 311 1 2265 88 0 10 chr6 105454755 105455062 -83824492 - AluSx SINE Alu -8 304 1 21 36 0 0 chr6 105459775 105459803 -83819751 + GC_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 105460887 105460916 -83818638 + AT_rich Low_complexity Low_complexity 1 29 0 935 94 47 0 chr6 105462451 105462579 -83816975 + AluSg SINE Alu 1 134 -176 2327 70 0 0 chr6 105462581 105462879 -83816675 + AluY SINE Alu 1 298 -13 202 204 23 0 chr6 105462994 105463038 -83816516 + G-rich Low_complexity Low_complexity 3 47 0 243 0 0 0 chr6 105463465 105463492 -83816062 + (TG)n Simple_repeat Simple_repeat 1 27 0 1953 133 0 10 chr6 105464824 105465154 -83814400 + AluJb SINE Alu 1 312 0 660 291 88 32 chr6 105566610 105566895 -83712659 - MLT1L LTR MaLR -149 466 166 23 33 0 0 chr6 105567054 105567084 -83712470 + AT_rich Low_complexity Low_complexity 1 30 0 184 271 146 76 chr6 105567488 105567632 -83711922 - MIR SINE MIR -100 162 9 362 191 36 0 chr6 105568477 105568561 -83710993 + MER53 DNA DNA 9 95 -94 323 184 46 11 chr6 105568491 105568578 -83710976 - MER53 DNA DNA -12 177 88 * 227 304 0 0 chr6 105569953 105570009 -83709545 + MIR3 SINE MIR 114 169 -39 637 282 56 78 chr6 105570616 105570935 -83708619 + MLT1I LTR MaLR 48 359 -50 399 340 78 50 chr6 105570966 105571390 -83708164 + L1M4 LINE L1 2204 2639 -3507 659 224 9 0 chr6 105571406 105571522 -83708032 - FLAM_C SINE Alu -15 118 2 762 179 0 0 chr6 105571576 105571693 -83707861 - FLAM_C SINE Alu -26 117 1 339 318 74 33 chr6 105571705 105572256 -83707298 + L1M4 LINE L1 2639 3212 -2934 2684 259 154 26 chr6 105572449 105572677 -83706877 + L1MEc LINE L1 470 667 -5548 180 0 0 0 chr6 105572677 105572697 -83706857 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2684 259 154 26 chr6 105572697 105575715 -83703839 + L1MEc LINE L1 667 4117 -2098 303 250 59 7 chr6 105575832 105575984 -83703570 - L1M4 LINE L1 -2983 3163 3004 597 330 35 13 chr6 105576001 105576228 -83703326 - MIR SINE MIR -3 259 28 421 283 97 27 chr6 105578469 105578780 -83700774 + MLT1G1 LTR MaLR 2 347 -195 2545 30 20 0 chr6 105579255 105579552 -83700002 - AluY SINE Alu -8 303 1 2224 165 72 18 chr6 105580360 105580803 -83698751 - MLT1C LTR MaLR 0 467 1 2150 127 0 0 chr6 105581227 105581534 -83698020 + AluSg SINE Alu 1 307 -3 183 244 0 0 chr6 105581738 105581779 -83697775 + L2 LINE L2 3273 3313 0 243 0 0 0 chr6 105583451 105583478 -83696076 + (CA)n Simple_repeat Simple_repeat 2 28 0 8189 96 30 2 chr6 105583817 105585035 -83694519 + L1P LINE L1 2432 3683 -2463 2296 96 0 3 chr6 105586025 105586327 -83693227 - AluSq SINE Alu -9 304 4 28 48 0 0 chr6 105586905 105586947 -83692607 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr6 105586973 105587002 -83692552 + AT_rich Low_complexity Low_complexity 1 29 0 2409 243 93 37 chr6 105587357 105589082 -83690472 + L1ME1 LINE L1 842 6435 -11 366 23 0 0 chr6 105589108 105589151 -83690403 + (CA)n Simple_repeat Simple_repeat 2 44 0 199 368 23 58 chr6 105589891 105590065 -83689489 - L2 LINE L2 -15 3257 3090 1346 177 143 0 chr6 105590238 105590532 -83689022 + MER1B DNA MER1_type 2 337 0 432 235 0 0 chr6 105590804 105590885 -83688669 - MER63A DNA MER1_type 0 210 130 560 238 35 108 chr6 105591353 105591584 -83687970 + MER58C DNA MER1_type 1 214 -1 400 283 94 56 chr6 105591985 105592218 -83687336 + MIR SINE MIR 21 262 0 2035 98 0 18 chr6 105592426 105592711 -83686843 + AluSx SINE Alu 1 280 -32 387 0 0 0 chr6 105592712 105592755 -83686799 + (TAA)n Simple_repeat Simple_repeat 2 44 0 347 235 42 42 chr6 105594036 105594155 -83685399 - MIR3 SINE MIR -2 206 88 1041 171 79 30 chr6 105594177 105594559 -83684995 - MER39 LTR ERV1 0 639 312 2083 155 30 28 chr6 105594560 105594922 -83684632 - THE1B LTR MaLR 0 364 2 292 293 38 38 chr6 105594956 105595062 -83684492 - LTR48B LTR ERV1 -538 106 1 1578 191 112 10 chr6 105595707 105596090 -83683464 + L1MB7 LINE L1 5753 6174 -10 21 0 0 0 chr6 105596256 105596277 -83683277 + AT_rich Low_complexity Low_complexity 1 21 0 956 231 150 49 chr6 105597224 105597658 -83681896 + MLT1D LTR MaLR 1 467 0 317 293 64 124 chr6 105597825 105598108 -83681446 - L3 LINE CR1 -106 1471 1206 775 239 33 11 chr6 105598155 105598339 -83681215 + MER5A DNA MER1_type 1 188 -1 401 300 230 5 chr6 105599012 105599212 -83680342 - MIR SINE MIR -16 246 2 207 0 0 0 chr6 105599457 105599480 -83680074 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 188 314 85 78 chr6 105600515 105600668 -83678886 + L2 LINE L2 3118 3271 -1 461 298 40 0 chr6 105600773 105600924 -83678630 + L1ME2 LINE L1 6000 6156 -8 323 279 48 29 chr6 105601609 105601713 -83677841 + MIR SINE MIR 36 141 -67 21 36 0 0 chr6 105602745 105602773 -83676781 + AT_rich Low_complexity Low_complexity 1 28 0 247 298 29 0 chr6 105603413 105603517 -83676037 - L2 LINE L2 -1044 2270 2164 396 246 98 16 chr6 105603956 105604078 -83675476 - FLAM_A SINE Alu -1 132 1 213 371 18 12 chr6 105604586 105604749 -83674805 + MER5B DNA MER1_type 15 189 0 1993 145 0 0 chr6 105607653 105607943 -83671611 - AluSq SINE Alu -15 298 9 1824 162 0 4 chr6 105607999 105608277 -83671277 + AluJb SINE Alu 3 279 -33 1931 250 34 2 chr6 105609923 105610399 -83669155 - LTR40a LTR ERVL 0 519 29 21 0 0 0 chr6 105610886 105610907 -83668647 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr6 105612092 105612151 -83667403 + AT_rich Low_complexity Low_complexity 1 59 0 434 305 134 42 chr6 105612465 105613010 -83666544 + L1MC4a LINE L1 5315 5909 -1899 1748 132 64 3 chr6 105615455 105615750 -83663804 + AluSq SINE Alu 1 313 0 242 315 103 72 chr6 105615985 105616306 -83663248 + L3 LINE CR1 866 1196 -381 228 147 0 0 chr6 105616426 105616460 -83663094 - MLT2B1 LTR ERVL 0 414 381 678 130 9 9 chr6 105616468 105616571 -83662983 - LTR12 LTR ERV1 -2 712 611 5901 97 8 5 chr6 105616571 105617394 -83662160 - LTR12 LTR ERV1 0 826 1 1071 195 52 28 chr6 105617408 105617659 -83661895 - MLT2B1 LTR ERVL -263 257 1 227 257 277 0 chr6 105619948 105620049 -83659505 + MER5A DNA MER1_type 60 188 -1 3879 183 48 10 chr6 105620125 105620917 -83658637 + LTR1B LTR ERV1 5 826 0 23 33 0 0 chr6 105620942 105620972 -83658582 + AT_rich Low_complexity Low_complexity 1 30 0 271 359 61 8 chr6 105621063 105621194 -83658360 - MER115 DNA AcHobo -273 420 283 1876 120 3 18 chr6 105621370 105621686 -83657868 + AluSg SINE Alu 1 312 0 4587 177 113 96 chr6 105623234 105623793 -83655761 - L1MC3 LINE L1 0 7785 7237 303 261 11 11 chr6 105623793 105623881 -83655673 - MLT1F1 LTR MaLR -445 122 35 4587 177 113 96 chr6 105623881 105624690 -83654864 - L1MC3 LINE L1 -548 7237 6305 329 320 41 0 chr6 105624681 105624748 -83654806 - L1MCa LINE L1 -6271 155 92 * 216 0 0 0 chr6 105624748 105624772 -83654782 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 329 320 41 0 chr6 105624772 105624826 -83654728 - L1MCa LINE L1 -6334 92 29 252 59 0 0 chr6 105626401 105626435 -83653119 + (T)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chr6 105629179 105629207 -83650347 + AT_rich Low_complexity Low_complexity 1 28 0 11702 154 51 68 chr6 105629261 105630201 -83649353 - Tigger1 DNA MER2_type -1 2417 1462 7120 58 1 0 chr6 105630201 105631671 -83647883 - L1PA6 LINE L1 0 6154 4683 11702 154 51 68 chr6 105631671 105633190 -83646364 - Tigger1 DNA MER2_type -956 1462 1 699 260 39 10 chr6 105633256 105633464 -83646090 + MER20 DNA MER1_type 5 218 -1 10541 193 36 24 chr6 105633607 105636918 -83642636 - L1MA7 LINE L1 0 6877 3529 3330 216 5 13 chr6 105636887 105637485 -83642069 - L1MA7 LINE L1 -5003 1650 1058 * 2709 128 222 8 chr6 105637485 105637994 -83641560 + MER51A LTR ERV1 1 618 -16 4434 278 27 11 chr6 105638024 105639391 -83640163 - L1MA7 LINE L1 -5465 1188 58 7461 172 42 37 chr6 105639598 105641251 -83638303 + L1M4c LINE L1 3 1664 -4720 1836 160 56 8 chr6 105641252 105641609 -83637945 + L1MB3 LINE L1 5808 6181 -2 350 325 40 7 chr6 105641982 105642133 -83637421 - MER69A DNA AcHobo -20 157 2 249 183 0 0 chr6 105642666 105642726 -83636828 + A-rich Low_complexity Low_complexity 1 60 0 364 307 104 53 chr6 105643044 105643497 -83636057 + L1ME LINE L1 5313 5788 -333 232 293 73 41 chr6 105644225 105644348 -83635206 + MIR SINE MIR 106 232 -30 245 293 113 0 chr6 105645030 105645136 -83634418 - L2 LINE L2 -1357 1957 1840 282 318 101 18 chr6 105645318 105645535 -83634019 + LTR16A LTR ERVL 207 441 -9 1553 181 0 0 chr6 105647547 105647806 -83631748 + MER2 DNA MER2_type 1 259 -86 315 233 12 29 chr6 105647846 105648018 -83631536 + (TA)n Simple_repeat Simple_repeat 2 170 0 228 292 34 0 chr6 105648034 105648123 -83631431 - L1MD2 LINE L1 -196 6163 6072 * 232 247 24 12 chr6 105648119 105648204 -83631350 - L1MC4 LINE L1 -1346 6696 6611 3193 101 14 0 chr6 105648309 105648755 -83630799 - MLT2A2 LTR ERVL 0 453 2 25929 98 9 10 chr6 105648942 105652712 -83626842 + L1PA5 LINE L1 11 3777 -2369 6956 54 7 3 chr6 105652712 105653969 -83625585 + L1PA5 LINE L1 4883 6147 -7 2036 143 0 0 chr6 105654323 105654630 -83624924 - AluSc SINE Alu -2 307 1 341 350 30 65 chr6 105654957 105655160 -83624394 + L3 LINE CR1 1192 1386 -191 2234 101 7 0 chr6 105655160 105655456 -83624098 - AluSg SINE Alu -12 298 1 341 350 30 65 chr6 105655456 105655515 -83624039 + L3 LINE CR1 1386 1445 -132 369 93 0 0 chr6 105656210 105656264 -83623290 + (TAG)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr6 105656920 105656941 -83622613 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr6 105657171 105657199 -83622355 + AT_rich Low_complexity Low_complexity 1 28 0 820 273 61 37 chr6 105658114 105658853 -83620701 + L1MEc LINE L1 2030 2757 -3458 21 0 0 0 chr6 105659270 105659291 -83620263 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr6 105660381 105660418 -83619136 + AT_rich Low_complexity Low_complexity 1 37 0 2208 104 0 0 chr6 105660928 105661225 -83618329 - AluSg SINE Alu -13 297 1 1846 175 0 0 chr6 105661549 105661852 -83617702 - AluSx SINE Alu -4 308 6 1882 189 74 3 chr6 105662398 105662789 -83616765 + MSTB1 LTR MaLR 1 419 -13 999 187 59 59 chr6 105663141 105663414 -83616140 + MER46B DNA MER2_type 1 148 -88 2105 200 44 0 chr6 105663414 105663799 -83615755 + LTR57 LTR ERVL 1 402 -9 249 108 0 0 chr6 105663816 105663853 -83615701 + (TG)n Simple_repeat Simple_repeat 2 38 0 244 291 0 13 chr6 105664439 105664518 -83615036 - MLT1I LTR MaLR -325 84 7 21 0 0 0 chr6 105664730 105664751 -83614803 + AT_rich Low_complexity Low_complexity 1 21 0 377 382 64 24 chr6 105665682 105666056 -83613498 - MLT1I LTR MaLR 0 409 21 25 51 0 0 chr6 105666203 105666242 -83613312 + AT_rich Low_complexity Low_complexity 1 39 0 350 282 73 0 chr6 105667506 105667616 -83611938 + MIR SINE MIR 69 186 -76 590 322 30 15 chr6 105668093 105668295 -83611259 + MIR SINE MIR 33 237 -25 298 336 18 9 chr6 105668579 105668689 -83610865 - L1MC/D LINE L1 -2185 5623 5513 182 235 0 0 chr6 105669510 105669544 -83610010 + L2 LINE L2 3267 3300 -13 901 271 127 39 chr6 105669705 105670167 -83609387 - MLT1H LTR MaLR 0 549 5 378 129 0 0 chr6 105671207 105671269 -83608285 + (TC)n Simple_repeat Simple_repeat 1 62 0 240 35 0 0 chr6 105671269 105671298 -83608256 + (TG)n Simple_repeat Simple_repeat 2 30 0 1884 89 11 7 chr6 105672275 105672545 -83607009 - L1PA8 LINE L1 -6 6166 5896 225 372 95 0 chr6 105672563 105672711 -83606843 + MIR SINE MIR 51 212 -50 2026 113 0 17 chr6 105672973 105673273 -83606281 + AluSc SINE Alu 1 295 -14 336 24 0 0 chr6 105673574 105673615 -83605939 + (CA)n Simple_repeat Simple_repeat 2 42 0 249 242 71 30 chr6 105674063 105674162 -83605392 - MIR SINE MIR -62 200 98 203 94 62 62 chr6 105675455 105675519 -83604035 + (TTTA)n Simple_repeat Simple_repeat 3 66 0 369 0 0 0 chr6 105675549 105675590 -83603964 + (CA)n Simple_repeat Simple_repeat 2 42 0 4560 137 6 0 chr6 105676254 105676977 -83602577 + L1PA14 LINE L1 5426 6152 -9 356 211 67 0 chr6 105677015 105677105 -83602449 + L1MEc LINE L1 53 148 -6248 1678 286 62 59 chr6 105677106 105677944 -83601610 + L1MEc LINE L1 169 1012 -5384 1846 151 3 10 chr6 105677944 105678242 -83601312 + AluSx SINE Alu 1 296 -16 1678 286 62 59 chr6 105678242 105678308 -83601246 + L1MEc LINE L1 1012 1076 -5320 5420 263 88 63 chr6 105678332 105679212 -83600342 + L1M2 LINE L1 12 869 -5979 1466 106 89 17 chr6 105679212 105679448 -83600106 - AluSg SINE Alu 0 310 58 5420 263 88 63 chr6 105679448 105681472 -83598082 + L1M2 LINE L1 869 2842 -4006 1703 142 104 17 chr6 105681472 105681817 -83597737 + THE1C LTR MaLR 1 375 0 5420 263 88 63 chr6 105681817 105681912 -83597642 + L1M2 LINE L1 2842 2933 -3915 1556 198 22 0 chr6 105681912 105682190 -83597364 - AluJb SINE Alu -28 284 1 5420 263 88 63 chr6 105682190 105682439 -83597115 + L1M2 LINE L1 2933 3345 -3503 751 231 57 8 chr6 105682463 105682803 -83596751 + LTR54 LTR ERV1 99 510 0 26 30 0 0 chr6 105685057 105685090 -83594464 + AT_rich Low_complexity Low_complexity 1 33 0 238 323 0 0 chr6 105685320 105685382 -83594172 + L2 LINE L2 3211 3272 0 23 33 0 0 chr6 105685609 105685639 -83593915 + AT_rich Low_complexity Low_complexity 1 30 0 949 262 27 5 chr6 105685880 105686101 -83593453 - MER8 DNA MER2_type -13 226 1 334 299 39 24 chr6 105686107 105686234 -83593320 - MER112 DNA MER1_type -126 134 6 187 297 66 22 chr6 105686447 105686538 -83593016 - MIR3 SINE MIR 0 208 114 192 286 55 33 chr6 105686721 105686812 -83592742 + MIR3 SINE MIR 113 205 -3 22 70 0 0 chr6 105688444 105688487 -83591067 + AT_rich Low_complexity Low_complexity 1 43 0 229 182 39 52 chr6 105688511 105688588 -83590966 + L1MC4 LINE L1 6625 6700 -1342 244 272 0 22 chr6 105688742 105688834 -83590720 + L1MC4 LINE L1 6614 6703 -1339 252 246 0 33 chr6 105688839 105688900 -83590654 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 318 315 0 0 chr6 105688901 105688990 -83590564 + L1MC4 LINE L1 6615 6703 -1339 21 0 0 0 chr6 105689041 105689062 -83590492 + AT_rich Low_complexity Low_complexity 1 21 0 36 40 0 0 chr6 105689447 105689497 -83590057 + AT_rich Low_complexity Low_complexity 1 50 0 346 230 0 0 chr6 105689632 105689706 -83589848 - MIR SINE MIR -73 189 116 21 36 0 0 chr6 105690528 105690556 -83588998 + AT_rich Low_complexity Low_complexity 1 28 0 191 344 143 32 chr6 105691193 105691347 -83588207 + MIR SINE MIR 89 259 -3 184 308 0 77 chr6 105691812 105691877 -83587677 - MIR SINE MIR -133 75 16 279 0 0 0 chr6 105692117 105692148 -83587406 + (CA)n Simple_repeat Simple_repeat 2 32 0 264 296 0 23 chr6 105692422 105692510 -83587044 + T-rich Low_complexity Low_complexity 3 88 0 405 311 114 3 chr6 105693556 105693890 -83585664 - L1ME4a LINE L1 -246 5875 5505 2052 157 75 10 chr6 105693897 105694299 -83585255 - MSTA LTR MaLR 0 428 1 8424 189 45 6 chr6 105694299 105695888 -83583666 - MSTA-int LTR MaLR 0 1651 1 1487 172 143 39 chr6 105695892 105696276 -83583278 - MSTA LTR MaLR -4 424 1 24 0 0 0 chr6 105696734 105696758 -83582796 + AT_rich Low_complexity Low_complexity 1 24 0 2210 98 0 3 chr6 105696796 105697092 -83582462 + AluSp SINE Alu 1 295 -18 242 371 63 7 chr6 105697489 105697632 -83581922 + L2 LINE L2 2594 2744 -570 824 219 5 65 chr6 105697963 105698164 -83581390 - MER5A DNA MER1_type 0 189 1 32 26 0 0 chr6 105698273 105698312 -83581242 + AT_rich Low_complexity Low_complexity 1 39 0 435 280 88 8 chr6 105699557 105699682 -83579872 + MER5A DNA MER1_type 6 140 -49 310 330 9 0 chr6 105700613 105700725 -83578829 + L1M4 LINE L1 3724 3836 -2310 3141 196 66 56 chr6 105700760 105701491 -83578063 + L1MB7 LINE L1 5299 6042 -142 345 47 0 0 chr6 105701491 105701534 -83578020 + (TG)n Simple_repeat Simple_repeat 2 44 0 3141 196 66 56 chr6 105701534 105701666 -83577888 + L1MB7 LINE L1 6042 6171 -13 6405 195 34 61 chr6 105701769 105702610 -83576944 + L1MC2 LINE L1 29 892 -5534 243 0 0 0 chr6 105702610 105702637 -83576917 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6405 195 34 61 chr6 105702637 105703128 -83576426 + L1MC2 LINE L1 892 1308 -5118 674 217 0 0 chr6 105703128 105703257 -83576297 + FLAM_C SINE Alu 5 133 0 6405 195 34 61 chr6 105703257 105703602 -83575952 + L1MC2 LINE L1 1308 1661 -4765 1560 213 0 3 chr6 105703606 105703897 -83575657 + AluJo SINE Alu 3 292 -20 9761 238 49 15 chr6 105703899 105706066 -83573488 + L1MC2 LINE L1 1834 3925 -2699 1882 139 21 0 chr6 105706066 105706353 -83573201 + AluSx SINE Alu 1 293 -19 9761 238 49 15 chr6 105706353 105708511 -83571043 + L1MC2 LINE L1 3925 6339 -285 1651 181 3 16 chr6 105708511 105708826 -83570728 + AluJb SINE Alu 1 311 -1 9761 238 49 15 chr6 105708826 105709098 -83570456 + L1MC2 LINE L1 6339 6600 -24 206 290 0 0 chr6 105709652 105709714 -83569840 + (CATA)n Simple_repeat Simple_repeat 3 64 0 491 194 29 0 chr6 105709716 105709819 -83569735 - L1ME2 LINE L1 -10 6154 6049 * 572 237 47 26 chr6 105709814 105710004 -83569550 - L1MEc LINE L1 -2114 4101 3908 * 672 200 18 12 chr6 105710003 105710168 -83569386 - L1MD3 LINE L1 -8 7987 7822 470 249 132 0 chr6 105710179 105710368 -83569186 - L1MEc LINE L1 -2303 3912 3699 401 256 180 17 chr6 105710381 105710792 -83568762 - L1MEc LINE L1 -2551 3664 3187 18105 185 27 29 chr6 105710797 105713041 -83566513 - L1MA2 LINE L1 -7 7716 5469 1439 207 39 3 chr6 105713041 105713326 -83566228 - AluJo SINE Alu -17 295 1 18105 185 27 29 chr6 105713326 105718732 -83560822 - L1MA2 LINE L1 -2254 5469 12 1671 174 14 4 chr6 105718747 105719023 -83560531 - AluJb SINE Alu -23 289 11 1521 244 51 45 chr6 105719046 105719715 -83559839 - L1MEc LINE L1 -3027 3188 2516 911 243 73 99 chr6 105719752 105719976 -83559578 - L1MEc LINE L1 -4033 2363 2135 1731 180 7 0 chr6 105719976 105720265 -83559289 - AluSx SINE Alu -20 292 2 911 243 73 99 chr6 105720265 105720781 -83558773 - L1MEc LINE L1 -4261 2135 1643 2292 98 0 0 chr6 105720781 105721078 -83558476 - AluSc SINE Alu -12 297 1 911 243 73 99 chr6 105721078 105721152 -83558402 - L1MEc LINE L1 -4753 1643 1569 403 304 153 38 chr6 105721410 105721835 -83557719 + L1ME LINE L1 3338 3811 -2335 488 314 55 11 chr6 105721965 105722239 -83557315 + L1ME LINE L1 3953 4238 -1908 325 67 0 0 chr6 105722383 105722428 -83557126 - MADE1 DNA Mariner 0 80 36 458 333 73 44 chr6 105722547 105723011 -83556543 + L1ME LINE L1 4807 5302 -862 1877 148 3 3 chr6 105723011 105723301 -83556253 - AluSx SINE Alu -22 290 1 458 333 73 44 chr6 105723301 105723521 -83556033 + L1ME LINE L1 5302 5514 -650 252 86 0 0 chr6 105723761 105723796 -83555758 + (CA)n Simple_repeat Simple_repeat 2 36 0 316 264 112 67 chr6 105723890 105724316 -83555238 + MLT1J2 LTR MaLR 8 478 -33 2184 182 70 5 chr6 105725849 105726278 -83553276 + MSTB2 LTR MaLR 1 457 0 28 48 0 0 chr6 105726595 105726637 -83552917 + AT_rich Low_complexity Low_complexity 1 42 0 22 94 0 0 chr6 105727174 105727238 -83552316 + AT_rich Low_complexity Low_complexity 1 64 0 207 100 0 0 chr6 105727362 105727392 -83552162 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 1412 226 0 6 chr6 105727397 105727711 -83551843 - AluSx SINE Alu 0 312 1 29 78 0 0 chr6 105728257 105728321 -83551233 + AT_rich Low_complexity Low_complexity 1 64 0 216 97 0 0 chr6 105728444 105728475 -83551079 + (T)n Simple_repeat Simple_repeat 1 31 0 2275 115 0 0 chr6 105728482 105728794 -83550760 - AluSx SINE Alu 0 312 1 246 340 96 32 chr6 105729507 105729663 -83549891 + MIR SINE MIR 25 190 -72 30 27 0 0 chr6 105730094 105730131 -83549423 + AT_rich Low_complexity Low_complexity 1 37 0 195 220 0 0 chr6 105730472 105730522 -83549032 + (TATG)n Simple_repeat Simple_repeat 2 51 0 248 360 29 10 chr6 105730588 105730746 -83548808 - MER5B DNA MER1_type -18 171 1 211 197 26 40 chr6 105731168 105731244 -83548310 + GA-rich Low_complexity Low_complexity 1 75 0 2159 112 20 0 chr6 105733577 105733880 -83545674 + AluSc SINE Alu 1 309 0 2799 258 100 36 chr6 105734432 105735580 -83543974 + L1MEc LINE L1 49 1270 -5126 850 138 4 180 chr6 105735584 105735823 -83543731 - MER7A DNA MER2_type -151 195 1 3304 256 63 38 chr6 105735914 105736387 -83543167 + L1MEc LINE L1 1953 2413 -3802 1659 176 3 14 chr6 105736387 105736696 -83542858 + AluSx SINE Alu 1 306 0 249 33 0 0 chr6 105736696 105736726 -83542828 + (GA)n Simple_repeat Simple_repeat 2 31 0 3304 256 63 38 chr6 105736726 105737983 -83541571 + L1MEc LINE L1 2412 3712 -2503 5821 251 37 31 chr6 105738011 105740945 -83538609 + L1PA11 LINE L1 1 3768 -3816 1754 180 48 17 chr6 105740949 105741304 -83538250 + THE1C LTR MaLR 8 373 -2 8638 162 52 5 chr6 105741309 105742816 -83536738 + THE1C-int LTR MaLR 3 1580 0 * 2030 143 38 24 chr6 105742816 105743186 -83536368 + THE1C LTR MaLR 1 375 0 15652 158 28 7 chr6 105743186 105746710 -83532844 + L1PA11 LINE L1 3765 7368 -244 1365 251 29 11 chr6 105746705 105747084 -83532470 + L1ME1 LINE L1 5550 5935 -231 * 961 254 12 31 chr6 105747088 105747344 -83532210 + AluJo SINE Alu 32 282 -30 28 0 0 0 chr6 105747346 105747374 -83532180 + AT_rich Low_complexity Low_complexity 1 28 0 255 300 59 64 chr6 105747386 105747606 -83531948 + L1ME1 LINE L1 5945 6163 -3 246 220 0 0 chr6 105748089 105748148 -83531406 + (TA)n Simple_repeat Simple_repeat 2 60 0 28 48 0 0 chr6 105748261 105748303 -83531251 + AT_rich Low_complexity Low_complexity 1 42 0 2144 192 86 18 chr6 105748458 105748804 -83530750 - L1MB1 LINE L1 -7 6161 5767 474 18 0 0 chr6 105748804 105748859 -83530695 + (TA)n Simple_repeat Simple_repeat 2 56 0 2144 192 86 18 chr6 105748859 105749022 -83530532 - L1MB1 LINE L1 -401 5767 5617 * 3053 187 58 42 chr6 105749019 105749602 -83529952 + L1M3 LINE L1 4499 5109 -1059 2226 154 38 17 chr6 105749602 105750023 -83529531 - MSTB1 LTR MaLR -2 430 1 3053 187 58 42 chr6 105750023 105750547 -83529007 + L1M3 LINE L1 5109 5623 -545 850 262 25 25 chr6 105750711 105750955 -83528599 + MIR SINE MIR 19 262 0 227 146 42 0 chr6 105751387 105751435 -83528119 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 421 307 95 0 chr6 105751985 105752174 -83527380 + MER58C DNA MER1_type 9 215 0 520 271 24 6 chr6 105752865 105753031 -83526523 - L1M4 LINE L1 -4831 2024 1856 * 3608 252 67 51 chr6 105753025 105754566 -83524988 - L1M4 LINE L1 -4831 2024 483 942 192 18 40 chr6 105754577 105754801 -83524753 - L1M4 LINE L1 -6640 219 1 425 278 41 47 chr6 105754881 105755050 -83524504 + MLT1L LTR MaLR 440 607 -8 4337 243 42 48 chr6 105756547 105758399 -83521155 + L1MA6 LINE L1 778 3107 -4459 12314 188 38 68 chr6 105758413 105758979 -83520575 + L1MA6 LINE L1 3008 3590 -4129 1850 123 0 0 chr6 105758979 105759230 -83520324 + AluSx SINE Alu 46 296 -16 12314 188 38 68 chr6 105759230 105760899 -83518655 + L1MA6 LINE L1 3590 5308 -2411 1054 42 0 109 chr6 105760899 105761064 -83518490 + AluY SINE Alu 156 302 -9 12314 188 38 68 chr6 105761064 105763506 -83516048 + L1MA6 LINE L1 5308 7719 0 214 147 0 0 chr6 105764156 105764190 -83515364 + (CA)n Simple_repeat Simple_repeat 2 35 0 28 0 0 0 chr6 105764608 105764636 -83514918 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr6 105765505 105765538 -83514016 + AT_rich Low_complexity Low_complexity 1 33 0 2292 295 109 53 chr6 105765869 105767344 -83512210 - L2 LINE L2 -7 3306 1750 197 308 128 0 chr6 105768189 105768267 -83511287 - L2 LINE L2 -2 3270 3183 212 377 197 0 chr6 105768271 105768393 -83511161 - L2 LINE L2 -6 3266 3121 234 82 10 112 chr6 105769913 105770109 -83509445 + (TA)n Simple_repeat Simple_repeat 2 177 0 208 325 106 31 chr6 105770275 105770435 -83509119 - L2 LINE L2 -237 3035 2864 222 213 0 0 chr6 105771073 105771120 -83508434 + (TTTG)n Simple_repeat Simple_repeat 4 50 0 358 335 38 33 chr6 105771315 105771527 -83508027 - L2 LINE L2 -10 3303 3091 * 477 331 163 14 chr6 105771501 105771869 -83507685 - L2 LINE L2 -740 2574 2152 228 67 0 0 chr6 105772736 105772766 -83506788 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 23 33 0 0 chr6 105772862 105772892 -83506662 + AT_rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr6 105773286 105773309 -83506245 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 307 192 0 0 chr6 105773506 105773587 -83505967 - Alu SINE Alu 0 314 234 978 179 0 0 chr6 105773591 105773753 -83505801 - AluJb SINE Alu -15 297 136 213 39 0 0 chr6 105774832 105774858 -83504696 + (TG)n Simple_repeat Simple_repeat 1 26 0 252 160 120 0 chr6 105776844 105776894 -83502660 - L2 LINE L2 0 3313 3258 2087 130 7 0 chr6 105777201 105777500 -83502054 - AluSq SINE Alu -12 301 1 9545 103 10 0 chr6 105777589 105778905 -83500649 + THE1A-int LTR MaLR 252 1580 0 2055 137 41 6 chr6 105778905 105779248 -83500306 + THE1A LTR MaLR 1 355 0 200 182 0 36 chr6 105779634 105779689 -83499865 + (CATA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr6 105780582 105780603 -83498951 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr6 105781359 105781411 -83498143 + AT_rich Low_complexity Low_complexity 1 52 0 27 29 0 0 chr6 105782134 105782168 -83497386 + AT_rich Low_complexity Low_complexity 1 34 0 307 304 78 0 chr6 105782514 105782616 -83496938 - L2 LINE L2 -3 3310 3201 227 309 0 49 chr6 105782657 105782738 -83496816 - L2 LINE L2 -1 3271 3195 399 132 0 0 chr6 105783567 105783635 -83495919 + (TG)n Simple_repeat Simple_repeat 1 68 0 216 0 0 0 chr6 105784118 105784142 -83495412 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1885 138 3 10 chr6 105784447 105784759 -83494795 - AluSg SINE Alu 0 310 1 2174 91 3 25 chr6 105785390 105785708 -83493846 + AluY SINE Alu 1 311 0 295 301 25 30 chr6 105787809 105788012 -83491542 - L1ME LINE L1 -382 5739 5538 25 0 0 0 chr6 105788115 105788140 -83491414 + AT_rich Low_complexity Low_complexity 1 25 0 5645 154 110 15 chr6 105788253 105789078 -83490476 + Tigger2 DNA MER2_type 2 954 -1764 1401 183 186 16 chr6 105789078 105789444 -83490110 - MSTA LTR MaLR 0 428 1 5645 154 110 15 chr6 105789444 105789695 -83489859 + Tigger2 DNA MER2_type 954 1180 -1538 13230 190 35 36 chr6 105789813 105793004 -83486550 - L1MA4 LINE L1 -280 7439 4246 180 0 0 0 chr6 105793004 105793024 -83486530 + (TTG)n Simple_repeat Simple_repeat 2 21 0 13230 190 35 36 chr6 105793024 105794011 -83485543 - L1MA4 LINE L1 -3473 4246 3269 228 67 0 0 chr6 105794011 105794041 -83485513 + (CA)n Simple_repeat Simple_repeat 1 30 0 13230 190 35 36 chr6 105794041 105794061 -83485493 - L1MA4 LINE L1 -4450 3269 3250 2884 233 19 0 chr6 105794061 105794646 -83484908 - L1MA4 LINE L1 -4722 1843 1248 3283 179 49 10 chr6 105794649 105795259 -83484295 + Tigger2 DNA MER2_type 1166 1799 -919 * 3921 171 51 15 chr6 105795255 105795986 -83483568 + Tigger2 DNA MER2_type 1962 2718 0 23 68 0 0 chr6 105797007 105797051 -83482503 + AT_rich Low_complexity Low_complexity 1 44 0 844 202 50 55 chr6 105797514 105797732 -83481822 - MER20 DNA MER1_type -1 218 2 2042 160 16 30 chr6 105799817 105800186 -83479368 - THE1B LTR MaLR 0 364 1 193 406 13 13 chr6 105802329 105802484 -83477070 - L3 LINE CR1 -961 616 462 2061 158 8 35 chr6 105802775 105803149 -83476405 + THE1B LTR MaLR 1 364 0 329 320 29 10 chr6 105804043 105804146 -83475408 - L2 LINE L2 -2 3311 3207 398 284 87 9 chr6 105805886 105806115 -83473439 + L1ME4a LINE L1 5608 5854 -267 11708 224 35 22 chr6 105806188 105809992 -83469562 + L1PA11 LINE L1 6 4689 -2895 189 0 0 0 chr6 105809992 105810013 -83469541 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 11708 224 35 22 chr6 105810013 105810497 -83469057 + L1PA11 LINE L1 4689 5165 -2419 5754 117 13 34 chr6 105810497 105810662 -83468892 + L1PA11 LINE L1 5977 6144 -1468 2231 99 0 7 chr6 105810662 105810956 -83468598 + AluY SINE Alu 1 292 -19 5754 117 13 34 chr6 105810956 105811049 -83468505 + L1PA11 LINE L1 6144 6237 -1375 1677 181 0 11 chr6 105811049 105811336 -83468218 + AluSx SINE Alu 7 290 -22 5754 117 13 34 chr6 105811336 105812747 -83466807 + L1PA11 LINE L1 6237 7612 0 308 250 46 9 chr6 105812775 105812883 -83466671 + L1ME4a LINE L1 5999 6110 -11 365 0 22 0 chr6 105815145 105815190 -83464364 + (TG)n Simple_repeat Simple_repeat 1 46 0 215 312 11 0 chr6 105818847 105818912 -83460642 + MIR SINE MIR 94 162 -46 458 288 39 42 chr6 105819677 105819931 -83459623 + MIR SINE MIR 14 262 0 24 67 0 0 chr6 105822616 105822661 -83456893 + AT_rich Low_complexity Low_complexity 1 45 0 190 368 24 32 chr6 105824026 105824151 -83455403 - L3 LINE CR1 -44 1533 1410 29 0 0 0 chr6 105824192 105824221 -83455333 + AT_rich Low_complexity Low_complexity 1 29 0 284 307 80 44 chr6 105825340 105825477 -83454077 - MIR SINE MIR -106 156 15 2797 158 25 8 chr6 105825829 105826341 -83453213 + L1MC1 LINE L1 5804 6324 -9 21 36 0 0 chr6 105826867 105826895 -83452659 + AT_rich Low_complexity Low_complexity 1 28 0 379 295 147 26 chr6 105827575 105827731 -83451823 - MLT1I LTR MaLR -137 272 98 216 86 0 0 chr6 105827856 105827891 -83451663 + (CA)n Simple_repeat Simple_repeat 1 35 0 207 0 0 0 chr6 105828297 105828320 -83451234 + (CA)n Simple_repeat Simple_repeat 2 24 0 255 31 0 0 chr6 105828342 105828374 -83451180 + (TG)n Simple_repeat Simple_repeat 2 33 0 10398 193 34 7 chr6 105828529 105832251 -83447303 + L1PA15 LINE L1 2356 6163 -2 563 304 13 40 chr6 105832462 105832689 -83446865 - MIR SINE MIR -11 251 31 13355 173 33 12 chr6 105833012 105836117 -83443437 + L1MA1 LINE L1 2934 6179 -1542 2294 74 0 0 chr6 105836117 105836437 -83443117 + AluY SINE Alu 1 320 0 13355 173 33 12 chr6 105836437 105838013 -83441541 + L1MA1 LINE L1 6179 7721 0 279 54 0 0 chr6 105838121 105838158 -83441396 + (TG)n Simple_repeat Simple_repeat 2 38 0 31 26 0 0 chr6 105839071 105839109 -83440445 + AT_rich Low_complexity Low_complexity 1 38 0 544 185 8 42 chr6 105839651 105839770 -83439784 + MIR SINE MIR 141 255 -7 400 250 0 12 chr6 105839772 105839940 -83439614 + CT-rich Low_complexity Low_complexity 3 168 0 2444 263 52 13 chr6 105840041 105840940 -83438614 - L1M4 LINE L1 -2211 3935 3002 1023 198 12 27 chr6 105840937 105841195 -83438359 - L1MB1 LINE L1 -337 5852 5599 * 6095 116 4 0 chr6 105841195 105842187 -83437367 - L1PA11 LINE L1 0 6174 5177 13849 179 33 10 chr6 105842192 105848135 -83431419 - L1PB1 LINE L1 -2 6865 634 1055 159 5 25 chr6 105848135 105848336 -83431218 - L1PB1 LINE L1 -6663 200 4 994 117 80 6 chr6 105848333 105848496 -83431058 - L1M3 LINE L1 -559 5609 5435 * 818 149 43 0 chr6 105848496 105848637 -83430917 + L1MB1 LINE L1 5865 6011 -157 1031 165 38 17 chr6 105848638 105848874 -83430680 - L1MCa LINE L1 -5409 1017 777 1031 227 14 5 chr6 105848884 105849100 -83430454 - L1MCa LINE L1 -6188 238 21 541 15 0 0 chr6 105849320 105849386 -83430168 + L1PA3 LINE L1 6087 6152 -3 263 48 0 24 chr6 105849389 105849431 -83430123 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 26 30 0 0 chr6 105849629 105849662 -83429892 + AT_rich Low_complexity Low_complexity 1 33 0 247 240 0 0 chr6 105850712 105850762 -83428792 + (TG)n Simple_repeat Simple_repeat 2 51 0 214 288 0 14 chr6 105851218 105851291 -83428263 + (TA)n Simple_repeat Simple_repeat 2 73 0 2342 82 0 19 chr6 105852224 105852540 -83427014 + AluY SINE Alu 1 310 -1 2438 175 7 7 chr6 105852613 105853077 -83426477 - L1MC1 LINE L1 -188 6145 5682 207 0 0 0 chr6 105853077 105853100 -83426454 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1251 183 84 8 chr6 105853124 105853375 -83426179 - AluJb SINE Alu -42 270 1 2398 159 60 0 chr6 105853376 105853855 -83425699 - L1MC1 LINE L1 -652 5692 5188 25 0 0 0 chr6 105853857 105853882 -83425672 + AT_rich Low_complexity Low_complexity 1 25 0 6997 50 7 0 chr6 105853882 105855519 -83424035 - L1PA5 LINE L1 -8 6146 4504 241 24 73 0 chr6 105855519 105855560 -83423994 + T-rich Low_complexity Low_complexity 1 44 0 2555 14 0 0 chr6 105855560 105855847 -83423707 - AluYb8 SINE Alu -31 287 1 5461 102 0 1 chr6 105855857 105856653 -83422901 + L1P LINE L1 1944 2738 -3408 7099 52 9 1 chr6 105856915 105858018 -83421536 - L1P2 LINE L1 -549 5605 4497 2797 19 0 0 chr6 105858018 105858336 -83421218 - AluYb8 SINE Alu 0 318 1 20200 46 3 0 chr6 105858346 105860902 -83418652 + L1P LINE L1 1944 4505 -1641 5881 252 58 18 chr6 105860910 105861087 -83418467 - L1MC1 LINE L1 -945 5201 5033 2034 155 0 0 chr6 105861087 105861396 -83418158 - AluSx SINE Alu -3 309 1 5881 252 58 18 chr6 105861396 105863215 -83416339 - L1MC1 LINE L1 -1113 5033 3124 333 307 36 43 chr6 105863244 105863384 -83416170 + L1M4 LINE L1 2482 2620 -3526 1066 257 88 44 chr6 105863623 105864055 -83415499 - MLT1C LTR MaLR 0 467 17 727 190 0 29 chr6 105865533 105865670 -83413884 + FLAM_C SINE Alu 1 133 0 470 280 0 30 chr6 105866416 105866548 -83413006 + MIR SINE MIR 94 221 -41 21 0 0 0 chr6 105866905 105866926 -83412628 + AT_rich Low_complexity Low_complexity 1 21 0 267 93 0 0 chr6 105867205 105867248 -83412306 + (TG)n Simple_repeat Simple_repeat 2 44 0 30 0 0 0 chr6 105867436 105867466 -83412088 + AT_rich Low_complexity Low_complexity 1 30 0 5454 149 52 37 chr6 105868712 105869493 -83410061 + L1MA6 LINE L1 5066 5880 -420 1981 144 18 26 chr6 105869493 105869833 -83409721 - MER1B DNA MER1_type 0 337 1 5454 149 52 37 chr6 105869833 105870261 -83409293 + L1MA6 LINE L1 5880 6300 0 191 203 17 0 chr6 105870531 105870590 -83408964 + CT-rich Low_complexity Low_complexity 1 60 0 225 346 45 0 chr6 105871699 105871832 -83407722 - MLT1K LTR MaLR -2 586 448 1170 52 7 0 chr6 105872366 105872519 -83407035 - L1PA5 LINE L1 0 6154 6001 4873 42 4 1 chr6 105872519 105873469 -83406085 + L1PA5 LINE L1 4906 5858 -296 553 341 69 54 chr6 105873472 105874285 -83405269 - L1MC1 LINE L1 -3056 3090 2266 215 259 8 46 chr6 105874420 105874551 -83405003 + T-rich Low_complexity Low_complexity 1 126 0 377 318 96 29 chr6 105874666 105874905 -83404649 - HAL1b LINE L1 -422 926 672 22 35 0 0 chr6 105875119 105875148 -83404406 + AT_rich Low_complexity Low_complexity 1 29 0 680 203 8 0 chr6 105875546 105875689 -83403865 + FLAM_A SINE Alu 1 144 0 4383 32 0 0 chr6 105875801 105876327 -83403227 - L1P LINE L1 -951 5195 4670 7238 48 0 0 chr6 105877182 105878141 -83401413 + L1PA3 LINE L1 5194 6155 0 1270 186 128 25 chr6 105878259 105878586 -83400968 + THE1C LTR MaLR 15 375 0 2031 93 0 11 chr6 105879134 105879413 -83400141 + AluSc SINE Alu 34 309 0 352 310 35 0 chr6 105880132 105880274 -83399280 + HAL1b LINE L1 1195 1341 -7 444 303 12 6 chr6 105880638 105880803 -83398751 + L1ME3 LINE L1 4625 4790 -1356 1515 187 145 14 chr6 105880813 105881247 -83398307 + LTR54B LTR ERV1 1 491 -7 1124 196 115 56 chr6 105881405 105881878 -83397676 + MER31B LTR ERV1 1 485 0 524 311 17 18 chr6 105882004 105882387 -83397167 + L1ME3 LINE L1 5078 5462 -702 996 257 37 58 chr6 105882427 105882865 -83396689 + MER39 LTR ERV1 73 673 -5 877 276 84 13 chr6 105882871 105883182 -83396372 + L1ME3 LINE L1 5452 5784 -386 32530 64 4 2 chr6 105883209 105888259 -83391295 - L1PA5 LINE L1 -2 6152 1094 712 266 35 76 chr6 105888253 105888594 -83390960 + L1ME3 LINE L1 5785 6111 -59 * 291 332 81 29 chr6 105888733 105889116 -83390438 + L1ME4a LINE L1 5541 5943 -178 265 228 79 10 chr6 105889121 105889222 -83390332 + L1ME4a LINE L1 6001 6108 -13 2173 112 7 0 chr6 105890532 105890828 -83388726 + AluSq SINE Alu 2 299 -14 503 204 9 0 chr6 105891134 105891242 -83388312 - L1 LINE L1 -3524 2622 2514 25 31 0 0 chr6 105892705 105892737 -83386817 + AT_rich Low_complexity Low_complexity 1 32 0 475 378 92 34 chr6 105892990 105893347 -83386207 + L2 LINE L2 220 597 -2717 298 257 64 82 chr6 105894117 105894288 -83385266 - MIR SINE MIR -10 252 85 * 386 367 194 12 chr6 105894274 105894784 -83384770 + L2 LINE L2 1884 2486 -828 21 89 0 0 chr6 105894964 105895020 -83384534 + AT_rich Low_complexity Low_complexity 1 56 0 316 340 33 42 chr6 105895076 105895288 -83384266 - L2 LINE L2 -1 3312 3103 219 88 0 0 chr6 105895298 105895332 -83384222 + (TG)n Simple_repeat Simple_repeat 2 35 0 2139 101 7 7 chr6 105895489 105895787 -83383767 - AluSc SINE Alu -8 301 4 225 0 0 0 chr6 105898775 105898800 -83380754 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr6 105898898 105898919 -83380635 + AT_rich Low_complexity Low_complexity 1 21 0 220 288 250 0 chr6 105900674 105900754 -83378800 - MER5B DNA MER1_type -6 172 73 1421 246 41 47 chr6 105900954 105901462 -83378092 + MLT1D LTR MaLR 1 505 0 26 50 0 0 chr6 105901694 105901734 -83377820 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr6 105902045 105902076 -83377478 + AT_rich Low_complexity Low_complexity 1 31 0 425 50 17 0 chr6 105902194 105902254 -83377300 + (CA)n Simple_repeat Simple_repeat 2 62 0 898 235 59 13 chr6 105902634 105902977 -83376577 + MSTD LTR MaLR 1 396 0 1036 231 44 10 chr6 105902977 105903272 -83376282 + L1MEc LINE L1 643 947 -5449 554 218 16 32 chr6 105903279 105903467 -83376087 + L1MEc LINE L1 985 1169 -5227 338 327 0 0 chr6 105903451 105903561 -83375993 + L1MDa LINE L1 262 371 -6426 * 1591 291 141 27 chr6 105903628 105904152 -83375402 - L2 LINE L2 -1299 2015 1365 1678 69 5 0 chr6 105904152 105904368 -83375186 + AluY SINE Alu 86 302 -9 1591 291 141 27 chr6 105904368 105904650 -83374904 - L2 LINE L2 -1949 1365 1117 1784 182 3 47 chr6 105904661 105905034 -83374520 + L1MD2 LINE L1 232 557 -6230 1522 139 0 8 chr6 105905031 105905268 -83374286 + L1PA13 LINE L1 1634 1868 -4919 * 276 30 0 0 chr6 105905269 105905302 -83374252 + (CA)n Simple_repeat Simple_repeat 2 34 0 12405 204 59 17 chr6 105905326 105908191 -83371363 + L1PA13 LINE L1 2138 5121 -1676 240 22 67 22 chr6 105908171 105908216 -83371338 + L1PA4 LINE L1 5938 5984 -171 * 5731 100 31 5 chr6 105908219 105909251 -83370303 + L1PA13 LINE L1 5755 6809 -5 404 193 147 0 chr6 105909251 105909360 -83370194 + L1MD2 LINE L1 4223 4347 -2450 * 2715 236 93 32 chr6 105909333 105910151 -83369403 + L1MD2 LINE L1 6109 6976 -34 347 281 60 32 chr6 105910206 105910391 -83369163 + L1ME1 LINE L1 1761 1950 -5028 3019 240 84 23 chr6 105910410 105912214 -83367340 + L1ME1 LINE L1 4896 6813 -4 1896 166 3 0 chr6 105912271 105912578 -83366976 + AluSg SINE Alu 1 308 -2 224 155 0 56 chr6 105912647 105912718 -83366836 + (TAA)n Simple_repeat Simple_repeat 2 68 0 533 207 89 49 chr6 105912752 105912955 -83366599 + L1MC5 LINE L1 7305 7515 -446 482 321 55 42 chr6 105913533 105913985 -83365569 - L1ME1 LINE L1 -332 5834 5377 216 0 0 0 chr6 105917264 105917288 -83362266 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 303 346 124 35 chr6 105919126 105919755 -83359799 - L2 LINE L2 -2 3311 2627 182 302 32 0 chr6 105920030 105920093 -83359461 - L2 LINE L2 -1 3312 3248 37 0 0 0 chr6 105920288 105920325 -83359229 + AT_rich Low_complexity Low_complexity 1 37 0 2810 155 18 2 chr6 105920386 105920875 -83358679 + LOR1a LTR ERV1 1 497 0 215 103 26 0 chr6 105920924 105920963 -83358591 + (TA)n Simple_repeat Simple_repeat 2 41 0 379 313 60 20 chr6 105921581 105921731 -83357823 + MIR SINE MIR 29 184 -78 1935 141 10 13 chr6 105921775 105922073 -83357481 - AluSx SINE Alu -15 297 1 25 51 0 0 chr6 105922214 105922253 -83357301 + AT_rich Low_complexity Low_complexity 1 39 0 3398 132 13 4 chr6 105923232 105923779 -83355775 + MER41A LTR ERV1 3 554 0 29 60 0 0 chr6 105924667 105924717 -83354837 + AT_rich Low_complexity Low_complexity 1 50 0 665 212 163 20 chr6 105924725 105924928 -83354626 + MER67C LTR ERV1 1 232 -478 1912 207 26 10 chr6 105924956 105925343 -83354211 + MER57A LTR ERV1 11 403 0 2484 166 16 29 chr6 105925343 105925475 -83354079 + MER67C LTR ERV1 229 361 -349 261 0 0 0 chr6 105925475 105925504 -83354050 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2484 166 16 29 chr6 105925504 105925859 -83353695 + MER67C LTR ERV1 361 710 0 237 225 45 45 chr6 105927435 105927546 -83352008 + (TATATG)n Simple_repeat Simple_repeat 5 115 0 23 78 0 0 chr6 105927634 105927685 -83351869 + AT_rich Low_complexity Low_complexity 1 51 0 275 277 11 11 chr6 105928559 105928653 -83350901 + L1ME4a LINE L1 5317 5410 -711 441 0 0 0 chr6 105928948 105928997 -83350557 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 23 0 0 0 chr6 105929016 105929039 -83350515 + AT_rich Low_complexity Low_complexity 1 23 0 445 324 120 25 chr6 105929658 105930065 -83349489 + L1ME4a LINE L1 5584 6029 -92 22 0 0 0 chr6 105930069 105930091 -83349463 + AT_rich Low_complexity Low_complexity 1 22 0 32 26 0 0 chr6 105930893 105930932 -83348622 + AT_rich Low_complexity Low_complexity 1 39 0 2245 75 0 35 chr6 105930937 105931256 -83348298 + AluY SINE Alu 1 308 -3 538 310 105 5 chr6 105932214 105932414 -83347140 - MIR SINE MIR -3 259 40 3085 239 157 69 chr6 105932476 105934090 -83345464 - MER52A LTR ERV1 0 1755 1 234 191 0 0 chr6 105934157 105934204 -83345350 + A-rich Low_complexity Low_complexity 1 47 0 372 242 148 8 chr6 105934324 105934452 -83345102 - MIR SINE MIR -7 255 110 981 253 49 54 chr6 105934632 105935020 -83344534 - MLT1B LTR MaLR -4 386 1 514 312 95 26 chr6 105935878 105936109 -83343445 - MIR SINE MIR -7 255 9 246 32 0 0 chr6 105936405 105936436 -83343118 + (ATG)n Simple_repeat Simple_repeat 1 31 0 527 303 140 48 chr6 105937095 105937508 -83342046 - L2 LINE L2 -54 3259 2809 517 248 83 0 chr6 105937680 105937813 -83341741 - MER3 DNA MER1_type -87 122 26 1746 194 5 13 chr6 105938610 105938991 -83340563 - L1MB8 LINE L1 -1 6177 5800 2654 210 22 15 chr6 105938997 105939536 -83340018 + MER44D DNA MER2_type 7 604 -1 1895 178 68 22 chr6 105939536 105939946 -83339608 - L1MB8 LINE L1 -376 5802 5374 7960 139 9 18 chr6 105940645 105941953 -83337601 + HSMAR2 DNA Mariner 6 1302 0 21 57 0 0 chr6 105942184 105942219 -83337335 + AT_rich Low_complexity Low_complexity 1 35 0 238 367 13 0 chr6 105942341 105942420 -83337134 + L2 LINE L2 3151 3230 -42 1726 199 35 61 chr6 105942670 105943097 -83336457 + MLT2C2 LTR ERVL 1 416 -48 237 317 49 0 chr6 105943123 105943205 -83336349 + L2 LINE L2 2558 2643 -671 207 0 0 0 chr6 105943262 105943285 -83336269 + (TG)n Simple_repeat Simple_repeat 1 23 0 1072 190 22 18 chr6 105943287 105943513 -83336041 + MER2 DNA MER2_type 13 239 -106 272 255 0 0 chr6 105943524 105943575 -83335979 - MER2 DNA MER2_type -5 340 290 306 118 20 0 chr6 105943599 105943650 -83335904 + MLT2C2 LTR ERVL 413 464 0 1274 207 59 28 chr6 105944118 105944408 -83335146 + AluJo SINE Alu 3 301 -1 266 24 5 0 chr6 105944615 105944661 -83334893 - L1PA3 LINE L1 -3 6152 6106 22 0 0 0 chr6 105944884 105944906 -83334648 + AT_rich Low_complexity Low_complexity 1 22 0 588 40 0 0 chr6 105946099 105946174 -83333380 + AluY SINE Alu 225 299 -13 520 289 78 15 chr6 105946466 105946670 -83332884 + MIR SINE MIR 25 241 -21 22 0 0 0 chr6 105946921 105946943 -83332611 + AT_rich Low_complexity Low_complexity 1 22 0 213 282 0 35 chr6 105947352 105947437 -83332117 + CT-rich Low_complexity Low_complexity 3 84 0 299 152 0 15 chr6 105947672 105947738 -83331816 + (TA)n Simple_repeat Simple_repeat 1 65 0 245 288 51 25 chr6 105948852 105948970 -83330584 + MIR SINE MIR 29 149 -113 33 0 0 0 chr6 105949111 105949144 -83330410 + AT_rich Low_complexity Low_complexity 1 33 0 1594 157 27 27 chr6 105949954 105950254 -83329300 - AluJb SINE Alu -12 300 1 2357 53 0 17 chr6 105950625 105950926 -83328628 + AluY SINE Alu 1 296 -15 21 36 0 0 chr6 105951321 105951349 -83328205 + AT_rich Low_complexity Low_complexity 1 28 0 6876 60 6 0 chr6 105952775 105953655 -83325899 + L1PA7 LINE L1 5256 6140 -14 1550 220 96 19 chr6 105954739 105955208 -83324346 - MLT1D LTR MaLR 0 505 1 5874 133 132 122 chr6 105955624 105957330 -83322224 + pTR5 LTR ERV1 742 2438 0 1844 66 6 170 chr6 105957802 105958149 -83321405 - AluY SINE Alu -19 292 3 342 332 168 21 chr6 105958192 105958382 -83321172 - L3 LINE CR1 -364 1213 996 252 241 0 69 chr6 105958430 105958575 -83320979 + T-rich Low_complexity Low_complexity 1 135 0 311 359 51 18 chr6 105958575 105958792 -83320762 - L3 LINE CR1 -732 845 622 821 147 38 0 chr6 105959722 105959879 -83319675 - L1MA4 LINE L1 -4 6296 6134 16466 73 13 11 chr6 105961227 105962192 -83317362 - L1PA6 LINE L1 -6 6148 5187 243 0 0 0 chr6 105962192 105962219 -83317335 + (TTTAA)n Simple_repeat Simple_repeat 4 30 0 16466 73 13 11 chr6 105962219 105963828 -83315726 - L1PA6 LINE L1 -967 5187 3559 2809 7 0 0 chr6 105963828 105964135 -83315419 + AluYa5 SINE Alu 1 307 -4 16466 73 13 11 chr6 105964135 105964630 -83314924 - L1PA6 LINE L1 -2595 3559 3067 6555 63 6 0 chr6 105964630 105965488 -83314066 + L1PA6 LINE L1 2199 3061 -3085 34 24 0 0 chr6 105966694 105966735 -83312819 + AT_rich Low_complexity Low_complexity 1 41 0 1870 136 4 0 chr6 105967624 105967903 -83311651 - AluSq SINE Alu -30 283 4 21 0 0 0 chr6 105967906 105967927 -83311627 + AT_rich Low_complexity Low_complexity 1 21 0 888 299 62 12 chr6 105967937 105968436 -83311118 - L1ME LINE L1 -373 5797 5274 1501 191 4 0 chr6 105968466 105968723 -83310831 - AluSq SINE Alu -53 260 3 313 285 92 89 chr6 105968740 105969119 -83310435 - L1ME LINE L1 -896 5250 4874 2371 134 16 11 chr6 105969119 105969492 -83310062 + THE1C LTR MaLR 1 375 0 9911 122 35 12 chr6 105969492 105971037 -83308517 + THE1C-int LTR MaLR 1 1580 0 2268 164 13 5 chr6 105971037 105971409 -83308145 + THE1C LTR MaLR 1 375 0 313 285 92 89 chr6 105971409 105971691 -83307863 - L1ME LINE L1 -1271 4875 4585 1916 151 16 49 chr6 105971923 105972308 -83307246 - THE1C LTR MaLR -3 372 1 38 75 0 0 chr6 105972326 105972406 -83307148 + AT_rich Low_complexity Low_complexity 1 80 0 32 26 0 0 chr6 105972468 105972507 -83307047 + AT_rich Low_complexity Low_complexity 1 39 0 249 323 48 24 chr6 105973303 105973427 -83306127 - LTR16C LTR ERVL 0 491 365 255 271 168 47 chr6 105973551 105973658 -83305896 + L2 LINE L2 3190 3309 -4 354 317 118 30 chr6 105973658 105973920 -83305634 - L1MEd LINE L1 -4911 1208 924 545 147 0 32 chr6 105973931 105974026 -83305528 + FLAM_A SINE Alu 42 133 -9 26 50 0 0 chr6 105974028 105974068 -83305486 + AT_rich Low_complexity Low_complexity 1 40 0 259 241 71 27 chr6 105974181 105974293 -83305261 - L1MEd LINE L1 -5302 817 701 1678 160 46 0 chr6 105974459 105974741 -83304813 + AluSx SINE Alu 1 295 -17 243 41 61 20 chr6 105975085 105975134 -83304420 + A-rich Low_complexity Low_complexity 2 52 0 30 77 0 0 chr6 105975330 105975395 -83304159 + AT_rich Low_complexity Low_complexity 1 65 0 1365 167 115 35 chr6 105976182 105976353 -83303201 + THE1C LTR MaLR 1 157 -218 378 0 0 0 chr6 105976353 105976395 -83303159 + (TC)n Simple_repeat Simple_repeat 1 42 0 1365 167 115 35 chr6 105976395 105976570 -83302984 + THE1C LTR MaLR 157 375 0 275 298 71 28 chr6 105977658 105977799 -83301755 + HAL1 LINE L1 1 147 -2360 303 257 116 92 chr6 105977856 105978159 -83301395 + HAL1 LINE L1 1302 1611 -896 259 304 107 82 chr6 105978163 105978518 -83301036 + L2 LINE L2 2545 2908 -406 26 0 0 0 chr6 105979045 105979071 -83300483 + AT_rich Low_complexity Low_complexity 1 26 0 1067 212 0 0 chr6 105979138 105979327 -83300227 + MER58A DNA MER1_type 27 215 -9 321 277 79 62 chr6 105979449 105979626 -83299928 - HAL1 LINE L1 -910 1597 1418 518 303 90 66 chr6 105979680 105980220 -83299334 - L1M4b LINE L1 -4901 2046 1367 10907 212 32 15 chr6 105981182 105985877 -83293677 - L1 LINE L1 -797 6370 1583 580 152 19 9 chr6 105985977 105986082 -83293472 + MER4A LTR ERV1 559 664 0 2345 129 118 55 chr6 105986085 105986642 -83292912 + MER4A-int LTR ERV1 1 686 -5912 1190 262 39 16 chr6 105986789 105987098 -83292456 + MER4A-int LTR ERV1 1852 2167 -4164 1481 160 2 13 chr6 105987155 105987628 -83291926 + MER4B-int LTR ERV1 196 706 -6052 1564 191 3 7 chr6 105987939 105988250 -83291304 + AluJb SINE Alu 3 312 0 385 268 171 30 chr6 105988716 105988880 -83290674 + L2 LINE L2 2593 2779 -535 238 315 90 18 chr6 105988944 105989055 -83290499 + L2 LINE L2 3194 3312 -1 1111 316 64 32 chr6 105990496 105991057 -83288497 - HERVL40 LTR ERVL -4137 1393 815 692 287 19 23 chr6 105991199 105991415 -83288139 - HERVL40 LTR ERVL -4748 782 568 1472 231 39 97 chr6 105991442 105992031 -83287523 - HERVL40 LTR ERVL -4960 570 16 1573 248 72 14 chr6 105992067 105992510 -83287044 - LTR40a LTR ERVL -50 469 1 191 248 30 10 chr6 105993413 105993514 -83286040 + GA-rich Low_complexity Low_complexity 1 103 0 5902 102 22 6 chr6 105994249 105995415 -83284139 + L1PA14 LINE L1 4987 6159 -2 709 319 78 64 chr6 105996454 105997315 -83282239 + L2 LINE L2 2442 3313 0 21 71 0 0 chr6 105997449 105997491 -83282063 + AT_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr6 105997520 105997569 -83281985 + AT_rich Low_complexity Low_complexity 1 49 0 2258 110 0 0 chr6 105997578 105997870 -83281684 - AluSx SINE Alu -20 292 1 233 200 0 20 chr6 105998285 105998335 -83281219 + L2 LINE L2 3262 3310 -3 240 418 29 6 chr6 105998554 105998724 -83280830 - MIR3 SINE MIR -5 203 30 1980 116 14 0 chr6 106000414 106000698 -83278856 + AluSc SINE Alu 3 290 -19 22 0 0 0 chr6 106001970 106001992 -83277562 + AT_rich Low_complexity Low_complexity 1 22 0 3003 122 69 13 chr6 106002201 106002616 -83276938 + MER41A LTR ERV1 3 454 -100 2120 105 3 29 chr6 106002616 106002930 -83276624 - AluSq SINE Alu -1 312 7 3003 122 69 13 chr6 106002930 106003037 -83276517 + MER41A LTR ERV1 454 554 0 375 226 32 102 chr6 106003391 106003577 -83275977 - MER5B DNA MER1_type -1 177 5 6778 204 48 48 chr6 106003679 106005212 -83274342 - L1M2a LINE L1 -5629 1539 8 38 0 0 0 chr6 106005447 106005485 -83274069 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr6 106005614 106005652 -83273902 + AT_rich Low_complexity Low_complexity 1 38 0 1283 231 0 16 chr6 106007037 106007357 -83272197 - MER33 DNA MER1_type -9 315 1 283 167 14 28 chr6 106007828 106007900 -83271654 + GA-rich Low_complexity Low_complexity 3 73 0 192 111 0 0 chr6 106007913 106007949 -83271605 + (CAG)n Simple_repeat Simple_repeat 2 37 0 257 246 0 29 chr6 106007982 106008051 -83271503 + GA-rich Low_complexity Low_complexity 5 71 0 333 331 159 39 chr6 106008235 106008619 -83270935 - L3 LINE CR1 -70 1507 1078 316 320 80 32 chr6 106008687 106008812 -83270742 - L2 LINE L2 0 3272 3142 666 348 108 24 chr6 106008891 106009474 -83270080 - L3 LINE CR1 -636 941 310 3190 134 2 2 chr6 106009532 106010002 -83269552 + MER1A DNA MER1_type 60 529 0 5373 129 63 16 chr6 106010002 106010963 -83268591 + Tigger3b DNA MER2_type 224 1230 -1 229 171 53 13 chr6 106010985 106011061 -83268493 + (TATAA)n Simple_repeat Simple_repeat 4 82 0 21 36 0 0 chr6 106011716 106011744 -83267810 + AT_rich Low_complexity Low_complexity 1 28 0 356 320 110 0 chr6 106012086 106012314 -83267240 - MIR SINE MIR -2 260 8 316 377 13 6 chr6 106013626 106013785 -83265769 + MIR SINE MIR 8 167 -95 2220 209 31 25 chr6 106013786 106014299 -83265255 + LTR40a LTR ERVL 3 518 -1 1642 206 3 6 chr6 106015750 106016061 -83263493 + AluSx SINE Alu 1 310 -2 290 352 48 8 chr6 106016560 106016685 -83262869 + L2 LINE L2 3137 3266 -6 227 250 48 24 chr6 106017777 106017861 -83261693 + HsTC2 DNA Tc2 1 86 -1812 422 314 110 25 chr6 106018724 106019043 -83260511 + L1MEd LINE L1 26 371 -5748 1978 192 28 13 chr6 106019063 106019453 -83260101 + MSTD LTR MaLR 1 396 0 5008 242 70 33 chr6 106019455 106020818 -83258736 + MSTD-int LTR MaLR 2 1415 -320 23 0 0 0 chr6 106021016 106021039 -83258515 + AT_rich Low_complexity Low_complexity 1 23 0 1817 119 22 4 chr6 106021046 106021323 -83258231 - THE1C LTR MaLR 0 375 94 1103 178 51 20 chr6 106021323 106021576 -83257978 - Tigger1 DNA MER2_type -80 2338 2078 2401 127 19 0 chr6 106021619 106021998 -83257556 - Tigger1 DNA MER2_type -331 2087 1702 * 2614 194 8 2 chr6 106021996 106022476 -83257078 - Tigger1 DNA MER2_type -1934 484 2 1467 200 0 35 chr6 106022785 106023109 -83256445 - AluJb SINE Alu 0 316 3 593 209 90 23 chr6 106024248 106024425 -83255129 - MER3 DNA MER1_type -18 191 3 1094 115 44 11 chr6 106024764 106024946 -83254608 + L1MA4 LINE L1 5694 5881 -419 2277 103 0 3 chr6 106025139 106025451 -83254103 - AluY SINE Alu 0 311 1 2088 135 0 0 chr6 106025696 106025992 -83253562 - AluSx SINE Alu -16 296 1 1596 159 36 4 chr6 106026023 106026299 -83253255 + AluJo SINE Alu 1 285 -27 31 44 0 0 chr6 106028271 106028316 -83251238 + AT_rich Low_complexity Low_complexity 1 45 0 240 35 0 0 chr6 106029034 106029063 -83250491 + (A)n Simple_repeat Simple_repeat 1 29 0 328 108 62 0 chr6 106030042 106030107 -83249447 + CT-rich Low_complexity Low_complexity 2 70 0 1867 160 19 43 chr6 106030505 106030880 -83248674 + MER47A DNA MER2_type 1 366 0 807 168 140 11 chr6 106031930 106032109 -83247445 - MLT1F LTR MaLR -1 541 340 383 221 19 58 chr6 106032127 106032231 -83247323 + MLT1E2 LTR MaLR 1 100 -526 575 229 94 131 chr6 106032299 106032574 -83246980 - MLT1F LTR MaLR -249 293 29 1109 233 144 48 chr6 106033598 106034052 -83245502 + MLT1D LTR MaLR 3 393 -16 1441 212 77 26 chr6 106034296 106034673 -83244881 + MSTD LTR MaLR 1 396 0 314 235 20 31 chr6 106035082 106035180 -83244374 + GA-rich Low_complexity Low_complexity 4 100 0 264 259 134 54 chr6 106035248 106035360 -83244194 + MIR SINE MIR 28 148 -114 1647 224 53 31 chr6 106035964 106036415 -83243139 + MLT1C LTR MaLR 1 461 -6 293 214 62 45 chr6 106036821 106036933 -83242621 + L1MCa LINE L1 1093 1206 -5220 3092 74 8 1 chr6 106036962 106037366 -83242188 - MLT2A1 LTR ERVL -43 477 1 968 181 35 3 chr6 106037383 106037589 -83241965 + L1MC3 LINE L1 6397 6634 -1174 32 81 0 0 chr6 106038012 106038086 -83241468 + AT_rich Low_complexity Low_complexity 1 74 0 309 324 10 10 chr6 106038142 106038300 -83241254 + L1M4 LINE L1 2676 2833 -3313 300 359 35 23 chr6 106038611 106038867 -83240687 + L1MEd LINE L1 555 813 -5306 2072 143 0 6 chr6 106038901 106039215 -83240339 + AluSx SINE Alu 1 312 0 401 259 49 24 chr6 106039305 106039510 -83240044 + L1MEd LINE L1 891 1100 -5019 226 281 16 25 chr6 106039610 106039731 -83239823 + L1MEd LINE L1 1273 1392 -4918 769 254 40 0 chr6 106039943 106040144 -83239410 + U3 snRNA snRNA 1 209 -8 640 292 83 31 chr6 106040171 106040595 -83238959 + L1MEd LINE L1 2457 2858 -3271 1493 58 0 0 chr6 106040595 106040785 -83238769 - L1PA5 LINE L1 0 6154 5965 640 292 83 31 chr6 106040785 106041153 -83238401 + L1MEd LINE L1 2858 3322 -2807 21 0 0 0 chr6 106041154 106041175 -83238379 + AT_rich Low_complexity Low_complexity 1 21 0 2004 122 3 17 chr6 106041191 106041532 -83238022 + AluSq SINE Alu 7 313 0 892 184 41 18 chr6 106042795 106043013 -83236541 - L1MB3 LINE L1 -2 6181 5959 398 174 0 88 chr6 106043021 106043137 -83236417 - L1MB3 LINE L1 -1114 5032 4930 1276 265 21 9 chr6 106043193 106043612 -83235942 - L1MB3 LINE L1 -1207 4939 4516 12080 203 36 26 chr6 106043715 106043918 -83235636 - L1M4 LINE L1 -1494 4888 4689 1637 184 57 25 chr6 106043918 106044272 -83235282 + MLT1A1 LTR MaLR 1 365 0 12080 203 36 26 chr6 106044272 106046572 -83232982 - L1M4 LINE L1 -1693 4689 2414 1808 157 7 0 chr6 106046572 106046852 -83232702 + AluSx SINE Alu 1 282 -30 12080 203 36 26 chr6 106046852 106047531 -83232023 - L1M4 LINE L1 -3968 2414 1744 207 0 0 0 chr6 106047531 106047554 -83232000 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 12080 203 36 26 chr6 106047554 106049185 -83230369 - L1M4 LINE L1 -4638 1744 20 261 0 0 0 chr6 106049807 106049836 -83229718 + (TG)n Simple_repeat Simple_repeat 1 29 0 2116 98 7 26 chr6 106050202 106050507 -83229047 - AluY SINE Alu -12 299 1 1282 103 10 0 chr6 106050507 106050701 -83228853 + MER4A-int LTR ERV1 2300 2495 -4103 1296 167 71 0 chr6 106050701 106050941 -83228613 - LTR8 LTR ERV1 -434 257 1 1881 125 56 112 chr6 106050941 106051361 -83228193 + MER4A-int LTR ERV1 1738 2180 -4418 2036 121 0 0 chr6 106051361 106051634 -83227920 + AluSc SINE Alu 5 277 -32 605 47 0 12 chr6 106051634 106051720 -83227834 + (TAAA)n Simple_repeat Simple_repeat 1 85 0 1881 125 56 112 chr6 106051720 106051745 -83227809 + MER4A-int LTR ERV1 2178 3150 -3448 500 173 25 17 chr6 106051746 106051873 -83227681 + MER4A-int LTR ERV1 3550 4307 -2369 * 16667 104 43 20 chr6 106051872 106052951 -83226603 + MER4A-int LTR ERV1 3837 4890 -1708 2045 112 14 0 chr6 106052951 106053237 -83226317 - AluSx SINE Alu -22 290 1 16667 104 43 20 chr6 106053237 106054843 -83224711 + MER4A-int LTR ERV1 4890 6584 -14 555 130 10 30 chr6 106054857 106054957 -83224597 + MER4A LTR ERV1 1 98 -566 1634 131 5 82 chr6 106054957 106055331 -83224223 + MER4A LTR ERV1 261 664 0 270 374 36 14 chr6 106056138 106056277 -83223277 - L3 LINE CR1 -124 1453 1312 1144 212 0 9 chr6 106056300 106056517 -83223037 - MER58A DNA MER1_type -8 216 2 332 324 163 26 chr6 106056548 106056854 -83222700 - L3 LINE CR1 -319 1258 911 279 339 41 8 chr6 106057506 106057627 -83221927 - L2 LINE L2 -32 3240 3116 840 291 174 18 chr6 106057736 106058183 -83221371 - MLT1G1 LTR MaLR 0 595 79 384 241 5 118 chr6 106058406 106058601 -83220953 - MLT1G1-int LTR MaLR -182 1189 1017 2098 116 0 7 chr6 106058816 106059110 -83220444 - AluSc SINE Alu -17 292 1 23 0 0 0 chr6 106059118 106059141 -83220413 + AT_rich Low_complexity Low_complexity 1 23 0 1367 147 193 14 chr6 106059343 106059628 -83219926 + MER1B DNA MER1_type 2 337 0 615 247 23 11 chr6 106059739 106059913 -83219641 - MLT1G1-int LTR MaLR -793 578 403 225 254 0 0 chr6 106059913 106059972 -83219582 - MLT1F1 LTR MaLR -508 59 1 24 32 0 0 chr6 106060074 106060105 -83219449 + AT_rich Low_complexity Low_complexity 1 31 0 210 340 98 13 chr6 106060160 106060313 -83219241 - L3 LINE CR1 -1181 396 231 197 308 0 0 chr6 106060545 106060597 -83218957 - L3b LINE CR1 -2 1581 1530 1795 254 113 13 chr6 106060803 106061432 -83218122 + Zaphod DNA AcHobo 2406 3097 -934 1348 233 231 75 chr6 106061599 106062458 -83217096 + Zaphod DNA AcHobo 3026 4018 -13 704 335 163 16 chr6 106062472 106062624 -83216930 + L2 LINE L2 2239 2367 -947 6301 133 52 28 chr6 106062624 106063293 -83216261 + Tigger3b DNA MER2_type 1 715 -2313 2035 117 0 13 chr6 106063293 106063592 -83215962 + AluSc SINE Alu 1 295 -14 6301 133 52 28 chr6 106063592 106064121 -83215433 + Tigger3b DNA MER2_type 715 1229 -2 704 335 163 16 chr6 106064121 106064421 -83215133 + L2 LINE L2 2367 2758 -556 192 40 0 0 chr6 106065183 106065208 -83214346 + (TC)n Simple_repeat Simple_repeat 2 26 0 960 265 152 18 chr6 106065574 106066016 -83213538 + MLT1D LTR MaLR 3 503 -2 216 97 0 0 chr6 106066075 106066106 -83213448 + (TG)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr6 106067056 106067087 -83212467 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr6 106067222 106067257 -83212297 + AT_rich Low_complexity Low_complexity 1 35 0 332 250 121 0 chr6 106067630 106067746 -83211808 + LTR58 LTR ERV1 300 429 -250 340 331 8 15 chr6 106068904 106069034 -83210520 + MIR SINE MIR 17 145 -117 182 340 39 10 chr6 106069092 106069195 -83210359 + MIR SINE MIR 157 262 0 1646 186 126 31 chr6 106069285 106069730 -83209824 + LTR2B LTR ERV1 4 490 0 183 263 18 0 chr6 106069842 106069899 -83209655 + MIR SINE MIR 92 149 -113 624 194 167 7 chr6 106070339 106070483 -83209071 - MER5A DNA MER1_type -2 187 21 1913 199 63 5 chr6 106070926 106071338 -83208216 + MER67D LTR ERV1 79 514 0 301 299 55 0 chr6 106071911 106072038 -83207516 + MER94 DNA DNA 1 134 0 305 123 215 0 chr6 106073882 106073938 -83205616 + MLT2B1 LTR ERVL 1 70 -445 826 154 183 48 chr6 106073938 106074227 -83205327 - LTR49 LTR ERV1 0 596 304 * 995 171 249 0 chr6 106074206 106074423 -83205131 - LTR29 LTR ERV1 -350 272 2 1875 197 50 63 chr6 106074425 106074851 -83204703 + MLT2B1 LTR ERVL 65 486 -34 441 0 0 0 chr6 106074851 106074900 -83204654 + (TG)n Simple_repeat Simple_repeat 1 49 0 1875 197 50 63 chr6 106074900 106074935 -83204619 + MLT2B1 LTR ERVL 486 520 0 59 65 0 0 chr6 106075054 106075162 -83204392 + AT_rich Low_complexity Low_complexity 1 108 0 335 301 59 22 chr6 106075376 106075536 -83204018 + MIR SINE MIR 30 196 -64 21 0 0 0 chr6 106075885 106075906 -83203648 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr6 106077732 106077783 -83201771 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr6 106078087 106078111 -83201443 + AT_rich Low_complexity Low_complexity 1 24 0 500 288 104 29 chr6 106078115 106078424 -83201130 - MER110 LTR ERV1 0 491 160 2065 125 98 15 chr6 106078458 106078794 -83200760 - THE1B LTR MaLR 0 364 1 910 107 0 0 chr6 106078794 106078934 -83200620 - THE1B-int LTR MaLR 0 1580 1441 2399 57 10 0 chr6 106079315 106079616 -83199938 - AluY SINE Alu -7 304 1 22 35 0 0 chr6 106079713 106079742 -83199812 + AT_rich Low_complexity Low_complexity 1 29 0 237 381 8 45 chr6 106081985 106082119 -83197435 + L2 LINE L2 2963 3091 -181 23 0 0 0 chr6 106082199 106082222 -83197332 + AT_rich Low_complexity Low_complexity 1 23 0 33 56 0 0 chr6 106083281 106083335 -83196219 + AT_rich Low_complexity Low_complexity 1 54 0 343 272 17 17 chr6 106083557 106083737 -83195817 + (TA)n Simple_repeat Simple_repeat 1 180 0 2084 116 3 3 chr6 106084200 106084501 -83195053 + AluSx SINE Alu 1 301 -11 31 68 0 0 chr6 106085201 106085260 -83194294 + AT_rich Low_complexity Low_complexity 1 59 0 21 36 0 0 chr6 106086059 106086087 -83193467 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chr6 106087111 106087143 -83192411 + AT_rich Low_complexity Low_complexity 1 32 0 7680 140 19 8 chr6 106087243 106088541 -83191013 - THE1B-int LTR MaLR -269 1311 1 2076 118 102 6 chr6 106088541 106088873 -83190681 - THE1B LTR MaLR 0 364 1 310 217 24 36 chr6 106088898 106088981 -83190573 - MER110A LTR ERV1 -292 176 95 312 70 0 0 chr6 106089105 106089148 -83190406 + (GA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr6 106091487 106091510 -83188044 + AT_rich Low_complexity Low_complexity 1 23 0 309 51 0 0 chr6 106091668 106091707 -83187847 + (TG)n Simple_repeat Simple_repeat 2 40 0 2360 68 6 6 chr6 106091774 106092085 -83187469 + AluY SINE Alu 1 311 0 698 307 59 13 chr6 106093066 106093304 -83186250 - MIR SINE MIR 0 262 14 23 33 0 0 chr6 106093691 106093721 -83185833 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr6 106094022 106094053 -83185501 + AT_rich Low_complexity Low_complexity 1 31 0 307 355 54 42 chr6 106094423 106094589 -83184965 - MIR3 SINE MIR -21 187 20 4222 177 30 24 chr6 106094787 106095577 -83183977 - L1MCa LINE L1 -5612 814 20 225 317 161 10 chr6 106095590 106095703 -83183851 + MIR3 SINE MIR 30 160 -48 181 302 70 47 chr6 106096583 106096669 -83182885 - L2 LINE L2 -14 3258 3171 533 365 71 33 chr6 106099044 106099625 -83179929 + L2 LINE L2 2310 2912 -402 21824 94 11 3 chr6 106099838 106102865 -83176689 + L1P LINE L1 1 3051 -3095 256 300 36 73 chr6 106103710 106103820 -83175734 + LTR67 LTR ERVL 95 200 -357 251 273 58 16 chr6 106104078 106104199 -83175355 - L1P5 LINE L1 -684 5470 5345 1954 190 48 21 chr6 106104219 106104550 -83175004 + MSTD LTR MaLR 8 352 -44 2270 119 14 8 chr6 106104550 106104903 -83174651 + THE1A LTR MaLR 1 355 0 1954 190 48 21 chr6 106104903 106104950 -83174604 + MSTD LTR MaLR 352 396 0 396 372 163 15 chr6 106105306 106105704 -83173850 + L3 LINE CR1 88 544 -1033 22 35 0 0 chr6 106105820 106105849 -83173705 + AT_rich Low_complexity Low_complexity 1 29 0 3101 158 77 40 chr6 106105867 106106492 -83173062 - L1MA8 LINE L1 -18 6273 5619 1213 223 27 41 chr6 106106492 106106784 -83172770 - AluJo SINE Alu -22 290 3 3101 158 77 40 chr6 106106784 106106849 -83172705 - L1MA8 LINE L1 -672 5619 5558 22 0 0 0 chr6 106106870 106106892 -83172662 + AT_rich Low_complexity Low_complexity 1 22 0 818 194 4 127 chr6 106106911 106107148 -83172406 + AluJo SINE Alu 4 211 -101 586 113 40 13 chr6 106107169 106107319 -83172235 + GA-rich Low_complexity Low_complexity 4 157 0 195 100 0 0 chr6 106107324 106107354 -83172200 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 6190 198 48 1 chr6 106107371 106109040 -83170514 - L1M4 LINE L1 -1526 5580 3833 226 216 80 88 chr6 106109040 106109165 -83170389 + LTR47B LTR ERVL 295 418 -25 23 33 0 0 chr6 106109302 106109332 -83170222 + AT_rich Low_complexity Low_complexity 1 30 0 3645 232 238 35 chr6 106110608 106111159 -83168395 - L1M4 LINE L1 -4312 2794 2356 311 0 26 0 chr6 106111159 106111198 -83168356 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 1419 191 52 4 chr6 106111201 106111468 -83168086 - AluJo SINE Alu -30 282 3 3645 232 238 35 chr6 106111468 106113509 -83166045 - L1M4 LINE L1 -4751 2355 1 804 287 50 6 chr6 106113665 106114003 -83165551 - Charlie7 DNA MER1_type -1876 736 384 255 284 74 34 chr6 106114151 106114299 -83165255 - Charlie7 DNA MER1_type -2456 156 3 449 200 11 21 chr6 106114302 106114397 -83165157 + L3 LINE CR1 646 739 -838 549 303 112 52 chr6 106114859 106115225 -83164329 + L3 LINE CR1 1188 1575 -2 967 213 57 124 chr6 106117471 106118052 -83161502 + MER34 LTR ERV1 1 542 0 21 36 0 0 chr6 106118199 106118227 -83161327 + AT_rich Low_complexity Low_complexity 1 28 0 213 237 31 21 chr6 106118529 106118626 -83160928 + (TA)n Simple_repeat Simple_repeat 2 99 0 1418 142 42 137 chr6 106118654 106119013 -83160541 + MER7A DNA MER2_type 1 323 -23 205 183 33 0 chr6 106119126 106119186 -83160368 + (TA)n Simple_repeat Simple_repeat 1 62 0 1199 173 24 40 chr6 106120192 106120441 -83159113 - AluJo SINE Alu -67 245 1 183 80 0 0 chr6 106121403 106121428 -83158126 + (T)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chr6 106122612 106122642 -83156912 + AT_rich Low_complexity Low_complexity 1 30 0 184 184 53 0 chr6 106122997 106123035 -83156519 + L2 LINE L2 3262 3301 -12 270 225 117 33 chr6 106124182 106124302 -83155252 - L1ME3A LINE L1 -5 6165 6036 718 248 71 24 chr6 106124346 106124710 -83154844 - L1ME3A LINE L1 -632 5530 5155 377 261 143 6 chr6 106124923 106125208 -83154346 - L1ME3A LINE L1 -2028 4118 3793 31 0 0 0 chr6 106126118 106126149 -83153405 + AT_rich Low_complexity Low_complexity 1 31 0 1085 100 19 0 chr6 106126238 106126398 -83153156 + L1PA11 LINE L1 6011 6173 -1 606 223 35 106 chr6 106126446 106126849 -83152705 - MSTD LTR MaLR 0 396 3 321 26 0 0 chr6 106127310 106127348 -83152206 + (TCTA)n Simple_repeat Simple_repeat 2 39 0 306 345 23 61 chr6 106127357 106127618 -83151936 + L2 LINE L2 2522 2772 -542 223 359 28 38 chr6 106127908 106128014 -83151540 + L2 LINE L2 3168 3272 0 21 57 0 0 chr6 106128259 106128294 -83151260 + AT_rich Low_complexity Low_complexity 1 35 0 234 342 54 9 chr6 106130773 106130884 -83148670 - L2 LINE L2 -55 3258 3143 203 196 22 0 chr6 106131452 106131498 -83148056 + CT-rich Low_complexity Low_complexity 2 48 0 218 208 0 0 chr6 106132785 106132833 -83146721 + T-rich Low_complexity Low_complexity 2 49 0 559 289 116 66 chr6 106132943 106133030 -83146524 + MLT1K LTR MaLR 208 289 -299 2257 88 3 7 chr6 106133030 106133335 -83146219 + AluSc SINE Alu 1 304 -5 559 289 116 66 chr6 106133335 106133610 -83145944 + MLT1K LTR MaLR 289 588 0 477 284 86 78 chr6 106134644 106134901 -83144653 - MIR SINE MIR 0 262 4 1859 205 35 2 chr6 106135112 106135565 -83143989 - L1 LINE L1 -1445 4701 4234 961 148 0 11 chr6 106135575 106135757 -83143797 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 * 987 237 217 0 chr6 106135667 106136008 -83143546 - AluJo SINE Alu -8 304 2 963 224 5 0 chr6 106136009 106136201 -83143353 - L1 LINE L1 -1897 4249 4057 3550 164 35 77 chr6 106136202 106137872 -83141682 + L1MA10 LINE L1 4716 6321 -13 181 313 0 0 chr6 106140074 106140122 -83139432 - MIR3 SINE MIR -41 167 120 183 294 29 0 chr6 106143792 106143860 -83135694 - MER5B DNA MER1_type -18 160 91 188 33 0 33 chr6 106144085 106144115 -83135439 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 777 231 130 120 chr6 106144192 106144769 -83134785 - MLT1G LTR MaLR -12 578 1 24 0 0 0 chr6 106145057 106145081 -83134473 + AT_rich Low_complexity Low_complexity 1 24 0 2068 191 7 22 chr6 106145090 106145550 -83134004 - L1MB4 LINE L1 -3 6177 5725 4540 168 16 26 chr6 106145550 106146797 -83132757 - L1MA3 LINE L1 -230 6075 4855 6468 189 12 2 chr6 106146805 106147424 -83132130 - L1MB4 LINE L1 -1115 5031 4420 189 0 0 0 chr6 106147424 106147445 -83132109 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 6468 189 12 2 chr6 106147445 106148109 -83131445 - L1MB4 LINE L1 -1726 4420 3734 23 33 0 0 chr6 106148956 106148986 -83130568 + AT_rich Low_complexity Low_complexity 1 30 0 403 264 82 24 chr6 106149189 106149397 -83130157 + L1ME4a LINE L1 5708 5927 -194 267 31 0 0 chr6 106149399 106149431 -83130123 + (CA)n Simple_repeat Simple_repeat 2 33 0 212 220 20 0 chr6 106149439 106149489 -83130065 + (TA)n Simple_repeat Simple_repeat 2 52 0 2332 174 29 14 chr6 106149499 106149913 -83129641 + MSTB LTR MaLR 1 420 -6 1959 146 39 39 chr6 106150095 106150459 -83129095 + THE1B LTR MaLR 1 364 0 40 0 0 0 chr6 106151196 106151236 -83128318 + AT_rich Low_complexity Low_complexity 1 40 0 1986 141 10 16 chr6 106151307 106151612 -83127942 + AluSx SINE Alu 1 303 -9 1366 240 19 32 chr6 106153181 106153560 -83125994 - MLT1A2 LTR MaLR 0 374 1 1117 238 62 54 chr6 106154764 106155248 -83124306 + L1ME3A LINE L1 5677 6164 -6 2306 127 13 19 chr6 106155630 106156007 -83123547 - THE1C LTR MaLR 0 375 1 9680 116 35 45 chr6 106156008 106157601 -83121953 - THE1C-int LTR MaLR -1 1579 3 2732 80 8 19 chr6 106157603 106157980 -83121574 - THE1C LTR MaLR 0 375 3 1493 179 29 68 chr6 106158054 106158434 -83121120 + MLT1A1 LTR MaLR 1 365 0 554 204 0 0 chr6 106158661 106158754 -83120800 - LTR32 LTR ERVL -2 469 377 278 247 25 0 chr6 106158872 106158953 -83120601 + L1MA4A LINE L1 6057 6139 -164 3831 281 37 30 chr6 106158960 106160278 -83119276 - HERVL32 LTR ERVL -2090 1328 1 718 198 73 17 chr6 106160278 106160455 -83119099 - LTR32 LTR ERVL 0 471 285 327 91 0 0 chr6 106160471 106160515 -83119039 - LTR32 LTR ERVL -409 62 19 266 291 23 23 chr6 106160866 106160952 -83118602 + L2 LINE L2 3184 3269 -3 2044 154 15 0 chr6 106162549 106163118 -83116436 + L1PA8A LINE L1 10 624 -5251 4187 88 6 17 chr6 106163118 106163812 -83115742 - L1P LINE L1 -2220 3926 3116 * 23574 162 22 23 chr6 106163808 106169570 -83109984 + L1PA8A LINE L1 615 6442 -4 282 95 0 0 chr6 106171745 106171787 -83107767 + (TC)n Simple_repeat Simple_repeat 2 43 0 482 253 27 60 chr6 106172140 106172290 -83107264 - MER106B DNA MER1_type -913 146 2 1231 105 66 190 chr6 106172640 106172945 -83106609 + AluSq SINE Alu 2 268 -45 27 29 0 0 chr6 106173138 106173172 -83106382 + AT_rich Low_complexity Low_complexity 1 34 0 354 259 86 78 chr6 106173204 106173475 -83106079 + L1MEd LINE L1 1262 1510 -4862 42171 57 2 0 chr6 106173483 106179625 -83099929 + L1PA4 LINE L1 2 6152 -3 320 250 65 0 chr6 106179746 106179838 -83099716 + L1MD3 LINE L1 7873 7970 -25 1147 188 12 43 chr6 106179993 106180248 -83099306 - THE1B LTR MaLR 0 364 118 1421 262 70 42 chr6 106180710 106181237 -83098317 - MLT1F LTR MaLR 0 542 1 277 319 0 0 chr6 106181354 106181426 -83098128 + MIR3 SINE MIR 128 199 -9 294 243 14 14 chr6 106182570 106182644 -83096910 + CT-rich Low_complexity Low_complexity 6 79 0 342 321 42 24 chr6 106182645 106182810 -83096744 + LTR33 LTR ERVL 95 262 -259 205 184 0 0 chr6 106183110 106183148 -83096406 + A-rich Low_complexity Low_complexity 3 40 0 28 29 0 0 chr6 106184064 106184099 -83095455 + AT_rich Low_complexity Low_complexity 1 35 0 986 257 63 93 chr6 106184128 106184649 -83094905 + MLT1H LTR MaLR 1 624 0 201 244 0 0 chr6 106184782 106184823 -83094731 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 462 162 36 9 chr6 106184825 106184936 -83094618 + GA-rich Low_complexity Low_complexity 3 116 0 7116 92 8 0 chr6 106185080 106186047 -83093507 - THE1B-int LTR MaLR -605 975 1 1811 130 38 54 chr6 106186047 106186417 -83093137 - THE1B LTR MaLR 0 364 1 346 221 24 34 chr6 106186636 106186747 -83092807 + L1MC4 LINE L1 6442 6545 -1450 195 311 0 14 chr6 106187693 106187767 -83091787 - L2 LINE L2 -5 3308 3236 2086 126 15 9 chr6 106187958 106188292 -83091262 + L1PA13 LINE L1 5823 6158 -5 198 351 0 27 chr6 106189182 106189256 -83090298 - L2 LINE L2 -4 3268 3197 21 0 0 0 chr6 106189609 106189630 -83089924 + AT_rich Low_complexity Low_complexity 1 21 0 371 295 29 0 chr6 106192440 106192545 -83087009 + MIR SINE MIR 81 188 -74 29 0 0 0 chr6 106192672 106192701 -83086853 + AT_rich Low_complexity Low_complexity 1 29 0 1331 259 187 73 chr6 106193451 106194453 -83085101 - L1M4 LINE L1 -798 5348 4461 729 193 99 35 chr6 106194453 106194655 -83084899 + MER20 DNA MER1_type 1 215 -4 1331 259 187 73 chr6 106194655 106194874 -83084680 - L1M4 LINE L1 -1685 4461 4268 2327 71 0 3 chr6 106194874 106195182 -83084372 + L1PA7 LINE L1 5837 6143 -11 1331 259 187 73 chr6 106195182 106195651 -83083903 - L1M4 LINE L1 -1878 4268 3465 1827 200 0 6 chr6 106195655 106196000 -83083554 + MER2 DNA MER2_type 1 343 -1 319 190 33 8 chr6 106196000 106196116 -83083438 + (TA)n Simple_repeat Simple_repeat 2 120 0 21 57 0 0 chr6 106196815 106196850 -83082704 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr6 106197336 106197372 -83082182 + AT_rich Low_complexity Low_complexity 1 36 0 219 284 15 0 chr6 106197564 106197631 -83081923 + (TA)n Simple_repeat Simple_repeat 2 69 0 39 22 0 0 chr6 106197791 106197837 -83081717 + AT_rich Low_complexity Low_complexity 1 46 0 1106 268 133 4 chr6 106197841 106198330 -83081224 + HAL1b LINE L1 300 851 -497 298 283 81 33 chr6 106198507 106198779 -83080775 + HAL1b LINE L1 1064 1348 0 1706 126 0 4 chr6 106199084 106199338 -83080216 + AluSx SINE Alu 58 310 -2 5809 111 24 13 chr6 106200400 106201323 -83078231 + L1MA5A LINE L1 5355 6287 -10 1553 198 3 17 chr6 106201327 106201620 -83077934 - AluJo SINE Alu -23 289 1 22 0 0 0 chr6 106201623 106201645 -83077909 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr6 106201651 106201691 -83077863 + AT_rich Low_complexity Low_complexity 1 40 0 374 303 66 0 chr6 106202856 106202978 -83076576 - MER94 DNA DNA -1 133 4 2469 46 0 7 chr6 106203870 106204173 -83075381 + AluY SINE Alu 1 301 -10 210 235 59 0 chr6 106205613 106205664 -83073890 - L2 LINE L2 -2 3270 3217 205 242 76 0 chr6 106206141 106206207 -83073347 - MIR SINE MIR -94 168 98 1775 157 3 26 chr6 106206479 106206785 -83072769 - AluSx SINE Alu -13 299 1 300 234 0 0 chr6 106207972 106208036 -83071518 + MLT1I LTR MaLR 110 173 -236 415 244 26 26 chr6 106208104 106208219 -83071335 + MLT1I LTR MaLR 278 392 -17 5226 28 0 0 chr6 106208967 106209601 -83069953 - L1PA2 LINE L1 -743 5403 4770 6386 19 3 0 chr6 106209601 106210405 -83069149 + L1PA2 LINE L1 5407 6217 0 326 284 108 10 chr6 106210920 106211022 -83068532 + L2 LINE L2 3199 3310 -3 353 304 0 0 chr6 106211201 106211303 -83068251 - MER94 DNA DNA -5 129 28 414 263 18 18 chr6 106212442 106212556 -83066998 - MER81 DNA DNA 0 114 1 353 21 0 21 chr6 106212638 106212685 -83066869 + (TA)n Simple_repeat Simple_repeat 1 46 0 27 62 0 0 chr6 106214412 106214460 -83065094 + AT_rich Low_complexity Low_complexity 1 48 0 261 0 0 0 chr6 106214806 106214835 -83064719 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 186 43 0 0 chr6 106214884 106214907 -83064647 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 412 282 135 0 chr6 106215339 106215495 -83064059 + MER5A DNA MER1_type 10 186 -3 2339 67 20 3 chr6 106216214 106216514 -83063040 - AluSg SINE Alu -5 305 1 21 0 0 0 chr6 106217310 106217331 -83062223 + AT_rich Low_complexity Low_complexity 1 21 0 271 302 56 56 chr6 106218032 106218158 -83061396 - L2 LINE L2 -6 3266 3141 23 0 0 0 chr6 106218167 106218190 -83061364 + AT_rich Low_complexity Low_complexity 1 23 0 1761 158 3 3 chr6 106218199 106218491 -83061063 + AluSx SINE Alu 1 292 -20 20058 50 2 1 chr6 106218764 106221326 -83058228 + L1P LINE L1 1050 3613 -2533 11464 174 50 14 chr6 106221320 106223519 -83056035 - L1PA15-16 LINE L1 -3915 2934 716 * 1148 181 5 15 chr6 106223516 106223720 -83055834 - L1PA15-16 LINE L1 -6646 203 2 * 483 266 92 22 chr6 106225114 106225298 -83054256 - Charlie8 DNA MER1_type -1015 1402 108 235 200 130 78 chr6 106225702 106225817 -83053737 + LTR67 LTR ERVL 426 546 -11 636 196 38 0 chr6 106226021 106226154 -83053400 + FLAM_C SINE Alu 5 142 -1 394 343 59 18 chr6 106226382 106226601 -83052953 + MIR SINE MIR 16 243 -19 689 215 74 18 chr6 106226939 106227102 -83052452 + MER5B DNA MER1_type 2 173 -5 1017 175 18 63 chr6 106227490 106227713 -83051841 - MER20 DNA MER1_type -5 214 2 21 36 0 0 chr6 106227854 106227882 -83051672 + AT_rich Low_complexity Low_complexity 1 28 0 554 270 160 10 chr6 106227992 106228404 -83051150 - L1MC4 LINE L1 -1190 6618 6198 182 272 39 78 chr6 106228709 106228812 -83050742 + MER5A DNA MER1_type 11 109 -80 21 36 0 0 chr6 106228985 106229013 -83050541 + AT_rich Low_complexity Low_complexity 1 28 0 1012 259 56 44 chr6 106230256 106230596 -83048958 + LTR16C LTR ERVL 148 491 0 24 77 0 0 chr6 106231296 106231348 -83048206 + AT_rich Low_complexity Low_complexity 1 52 0 180 111 0 0 chr6 106231650 106231677 -83047877 + (CA)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr6 106231721 106231743 -83047811 + AT_rich Low_complexity Low_complexity 1 22 0 279 0 0 0 chr6 106232235 106232266 -83047288 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2082 104 0 0 chr6 106232266 106232544 -83047010 - AluY SINE Alu -33 278 1 201 121 0 0 chr6 106234467 106234500 -83045054 + (A)n Simple_repeat Simple_repeat 1 33 0 28 29 0 0 chr6 106234696 106234731 -83044823 + AT_rich Low_complexity Low_complexity 1 35 0 189 213 0 0 chr6 106234814 106234861 -83044693 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 500 201 7 20 chr6 106235008 106235157 -83044397 + (TA)n Simple_repeat Simple_repeat 1 147 0 302 222 4 85 chr6 106235233 106235338 -83044216 - MIR SINE MIR -42 166 65 222 133 67 0 chr6 106235814 106235859 -83043695 + A-rich Low_complexity Low_complexity 5 52 0 308 149 0 15 chr6 106236316 106236383 -83043171 + (TA)n Simple_repeat Simple_repeat 1 66 0 222 62 0 0 chr6 106236524 106236556 -83042998 + (A)n Simple_repeat Simple_repeat 1 32 0 9156 198 12 20 chr6 106238479 106239133 -83040421 - L1PB4 LINE L1 -1 6155 5497 2257 112 0 3 chr6 106239133 106239437 -83040117 - AluSx SINE Alu -9 303 1 9156 198 12 20 chr6 106239437 106241625 -83037929 - L1PB4 LINE L1 -659 5497 3256 309 292 88 35 chr6 106242095 106242266 -83037288 + MIR SINE MIR 79 258 -4 917 171 7 0 chr6 106242375 106242521 -83037033 + FRAM SINE Alu 1 146 -30 2234 166 70 0 chr6 106242684 106243081 -83036473 - MSTA LTR MaLR 0 428 4 266 320 62 0 chr6 106243093 106243190 -83036364 + MIR SINE MIR 49 151 -111 295 239 19 18 chr6 106243317 106243574 -83035980 + GA-rich Low_complexity Low_complexity 1 257 0 4983 140 163 5 chr6 106244346 106245412 -83034142 - Tigger3b DNA MER2_type 0 1232 1 387 194 21 65 chr6 106246196 106246289 -83033265 + MLT1I LTR MaLR 232 320 -89 479 194 71 52 chr6 106247269 106247424 -83032130 + L1ME4a LINE L1 5960 6117 -4 27 0 0 0 chr6 106247650 106247677 -83031877 + AT_rich Low_complexity Low_complexity 1 27 0 211 359 64 0 chr6 106248861 106248939 -83030615 + L2 LINE L2 3190 3272 0 22 0 0 0 chr6 106249182 106249204 -83030350 + AT_rich Low_complexity Low_complexity 1 22 0 201 289 13 0 chr6 106251456 106251532 -83028022 + GA-rich Low_complexity Low_complexity 1 77 0 272 306 0 54 chr6 106251706 106251817 -83027737 + MIR SINE MIR 100 204 -58 525 16 0 0 chr6 106252527 106252589 -83026965 + (TG)n Simple_repeat Simple_repeat 1 62 0 534 280 140 0 chr6 106253026 106253219 -83026335 - LTR16A LTR ERVL -14 436 217 333 377 60 16 chr6 106253441 106253693 -83025861 - L2 LINE L2 -2202 1112 850 2416 51 0 3 chr6 106254083 106254377 -83025177 - AluY SINE Alu -18 293 1 21 0 0 0 chr6 106255173 106255194 -83024360 + AT_rich Low_complexity Low_complexity 1 21 0 274 302 56 56 chr6 106255895 106256021 -83023533 - L2 LINE L2 -6 3266 3141 26 52 0 17 chr6 106256030 106256062 -83023492 + AT_rich Low_complexity Low_complexity 1 33 -24 2010 138 3 0 chr6 106256062 106256353 -83023201 + AluSx SINE Alu 1 292 -20 26 52 0 17 chr6 106256353 106256378 -83023176 + AT_rich Low_complexity Low_complexity 33 57 0 966 264 5 5 chr6 106256555 106256771 -83022783 - MER58A DNA MER1_type 0 224 9 41021 64 4 2 chr6 106258763 106264895 -83014659 + L1PA5 LINE L1 11 6154 0 1366 186 72 14 chr6 106265639 106265758 -83013796 + AluJo SINE Alu 1 112 -200 225 0 0 0 chr6 106265758 106265783 -83013771 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1366 186 72 14 chr6 106265783 106265942 -83013612 + AluJo SINE Alu 112 295 -17 2770 108 23 20 chr6 106266065 106266508 -83013046 + MLT2A1 LTR ERVL 1 444 0 26 64 0 0 chr6 106266687 106266734 -83012820 + AT_rich Low_complexity Low_complexity 1 47 0 1594 184 14 10 chr6 106268230 106268523 -83011031 + AluJb SINE Alu 17 310 -2 180 235 0 0 chr6 106269965 106269999 -83009555 - L2 LINE L2 -11 3261 3228 492 296 141 29 chr6 106271078 106271355 -83008199 - MLT1I LTR MaLR 0 409 102 372 332 63 36 chr6 106271583 106271806 -83007748 - MIR SINE MIR -29 233 5 840 240 105 24 chr6 106271867 106272221 -83007333 + MER57A LTR ERV1 49 403 0 21 36 0 0 chr6 106274762 106274790 -83004764 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr6 106275259 106275285 -83004269 + AT_rich Low_complexity Low_complexity 1 26 0 329 214 19 48 chr6 106275512 106275615 -83003939 - L1MC4 LINE L1 -1339 6703 6604 456 268 30 6 chr6 106275615 106275783 -83003771 + (TA)n Simple_repeat Simple_repeat 2 173 0 391 366 33 25 chr6 106278037 106278280 -83001274 - MIR SINE MIR -15 247 3 5714 242 25 18 chr6 106278406 106279689 -82999865 + L1PA15-16 LINE L1 2 1260 -5589 3101 270 32 15 chr6 106279690 106280506 -82999048 + L1PA15-16 LINE L1 734 1563 -5286 806 244 0 0 chr6 106280492 106280685 -82998869 + L1PA15-16 LINE L1 1336 1528 -5322 * 430 213 41 47 chr6 106281072 106281241 -82998313 + L1PA15-16 LINE L1 1427 1594 -5256 446 212 20 20 chr6 106281272 106281418 -82998136 + GA-rich Low_complexity Low_complexity 1 146 0 5043 229 31 25 chr6 106281418 106282084 -82997470 + L1PA15-16 LINE L1 1617 2277 -4572 1673 155 57 41 chr6 106282084 106282451 -82997103 + THE1C LTR MaLR 1 373 -2 5043 229 31 25 chr6 106282451 106283024 -82996530 + L1PA15-16 LINE L1 2277 2872 -3977 2048 72 4 0 chr6 106283024 106283289 -82996265 + AluY SINE Alu 40 305 -6 5043 229 31 25 chr6 106283289 106283789 -82995765 + L1PA15-16 LINE L1 2872 3367 -3482 2064 194 36 60 chr6 106283764 106284379 -82995175 + L1 LINE L1 5062 5661 -1188 * 236 123 0 123 chr6 106284375 106284440 -82995114 + L1PA16 LINE L1 6109 6165 -1 * 1476 139 33 107 chr6 106284719 106285056 -82994498 - AluJb SINE Alu 0 312 1 1774 226 8 45 chr6 106287374 106287773 -82991781 - MLT1D LTR MaLR -121 384 1 266 329 22 36 chr6 106287780 106287917 -82991637 + MIR SINE MIR 128 262 0 1668 165 63 33 chr6 106288110 106288474 -82991080 - THE1C LTR MaLR 0 375 1 8931 151 17 29 chr6 106288474 106290074 -82989480 - THE1C-int LTR MaLR 0 1580 3 1643 192 54 31 chr6 106290076 106290430 -82989124 - THE1C LTR MaLR 0 375 14 745 192 32 0 chr6 106290785 106290910 -82988644 + AluJb SINE Alu 158 286 -26 2314 122 3 0 chr6 106291037 106291349 -82988205 + AluSp SINE Alu 1 313 0 1227 194 0 126 chr6 106291358 106291714 -82987840 + AluJb SINE Alu 1 311 -1 3106 192 21 5 chr6 106291717 106292296 -82987258 - LTR69 LTR ERVL 0 588 1 1760 161 46 40 chr6 106292353 106292726 -82986828 - THE1C LTR MaLR 0 375 1 9430 139 23 30 chr6 106292726 106294317 -82985237 - THE1C-int LTR MaLR 0 1580 1 2033 148 19 29 chr6 106294317 106294694 -82984860 - THE1C LTR MaLR 0 375 3 28262 62 1 1 chr6 106295611 106299223 -82980331 + L1P LINE L1 2 3613 -2533 6132 136 30 14 chr6 106299217 106300335 -82979219 - L1PA15-16 LINE L1 -3915 2934 1799 * 479 194 71 52 chr6 106300812 106300967 -82978587 + L1ME4a LINE L1 5960 6117 -4 27 0 0 0 chr6 106301193 106301220 -82978334 + AT_rich Low_complexity Low_complexity 1 27 0 211 359 64 0 chr6 106302404 106302482 -82977072 + L2 LINE L2 3190 3272 0 22 0 0 0 chr6 106302729 106302751 -82976803 + AT_rich Low_complexity Low_complexity 1 22 0 201 289 13 0 chr6 106305003 106305079 -82974475 + GA-rich Low_complexity Low_complexity 1 77 0 272 306 0 54 chr6 106305253 106305364 -82974190 + MIR SINE MIR 100 204 -58 525 16 0 0 chr6 106306074 106306136 -82973418 + (TG)n Simple_repeat Simple_repeat 1 62 0 534 280 140 0 chr6 106306572 106306765 -82972789 - LTR16A LTR ERVL -14 436 217 333 377 60 16 chr6 106306987 106307239 -82972315 - L2 LINE L2 -2202 1112 850 2298 53 0 7 chr6 106307629 106307913 -82971641 - AluY SINE Alu -18 293 12 416 51 0 0 chr6 106307946 106308005 -82971549 - AluSc SINE Alu -7 302 244 2049 57 8 0 chr6 106308130 106308377 -82971177 - AluY SINE Alu -62 249 1 245 199 52 47 chr6 106308555 106308641 -82970913 + MLT1J2 LTR MaLR 253 329 -121 25 0 0 0 chr6 106308831 106308856 -82970698 + AT_rich Low_complexity Low_complexity 1 25 0 186 328 17 0 chr6 106310539 106310597 -82968957 + L2 LINE L2 3249 3307 -6 357 351 39 19 chr6 106310865 106311073 -82968481 - MIR SINE MIR -5 257 46 869 317 74 62 chr6 106311448 106312138 -82967416 + HAL1 LINE L1 844 1541 -966 6891 83 173 4 chr6 106312178 106313235 -82966319 + MER11B LTR ERVK 1 1236 0 39 0 0 0 chr6 106313665 106313704 -82965850 + AT_rich Low_complexity Low_complexity 1 39 0 417 342 96 47 chr6 106313846 106314163 -82965391 + L1M4 LINE L1 3362 3719 -2427 198 71 0 0 chr6 106314163 106314191 -82965363 + (CA)n Simple_repeat Simple_repeat 2 29 0 417 342 96 47 chr6 106314191 106314426 -82965128 + L1M4 LINE L1 3719 3941 -2205 911 274 25 87 chr6 106314634 106314991 -82964563 + MER34 LTR ERV1 1 335 -207 1149 128 75 62 chr6 106315039 106315266 -82964288 - MER30 DNA MER1_type 0 230 1 611 196 63 58 chr6 106315282 106315471 -82964083 + MER34 LTR ERV1 353 542 0 337 301 38 8 chr6 106316300 106316433 -82963121 + MIR SINE MIR 54 190 -72 446 281 65 7 chr6 106317475 106317614 -82961940 + MIR SINE MIR 29 175 -87 1527 219 45 14 chr6 106320002 106320354 -82959200 - MLT1A2 LTR MaLR -5 369 7 21 36 0 0 chr6 106320779 106320807 -82958747 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 106320986 106321010 -82958544 + AT_rich Low_complexity Low_complexity 1 24 0 649 276 22 0 chr6 106324003 106324188 -82955366 - MIR SINE MIR -1 261 74 1201 112 0 0 chr6 106324790 106324951 -82954603 + AluSg/x SINE Alu 135 295 -17 23 0 0 0 chr6 106326532 106326555 -82952999 + AT_rich Low_complexity Low_complexity 1 23 0 216 299 39 13 chr6 106326883 106326960 -82952594 + MIR SINE MIR 183 261 -1 786 160 0 0 chr6 106329029 106329154 -82950400 + FLAM_C SINE Alu 2 126 -7 219 232 0 0 chr6 106329459 106329515 -82950039 + CT-rich Low_complexity Low_complexity 5 60 0 235 197 0 30 chr6 106329555 106329621 -82949933 + A-rich Low_complexity Low_complexity 2 65 0 207 0 0 0 chr6 106330214 106330237 -82949317 + (GA)n Simple_repeat Simple_repeat 2 24 0 22 70 0 0 chr6 106330372 106330415 -82949139 + AT_rich Low_complexity Low_complexity 1 43 0 1907 135 3 3 chr6 106332131 106332460 -82947094 - AluSx SINE Alu 0 329 1 22 0 0 0 chr6 106332989 106333011 -82946543 + AT_rich Low_complexity Low_complexity 1 22 0 631 247 57 53 chr6 106333088 106333315 -82946239 + MLT1L LTR MaLR 4 231 -384 22 0 0 0 chr6 106333709 106333731 -82945823 + AT_rich Low_complexity Low_complexity 1 22 0 228 315 63 42 chr6 106334018 106334161 -82945393 - L1MC/D LINE L1 -2051 5757 5612 252 0 0 0 chr6 106334167 106334195 -82945359 + (CA)n Simple_repeat Simple_repeat 2 29 0 2167 84 17 0 chr6 106334704 106335000 -82944554 - AluSc SINE Alu -8 301 1 425 357 33 33 chr6 106336004 106336186 -82943368 + MIR SINE MIR 1 182 -80 827 233 90 10 chr6 106336919 106337219 -82942335 + MER33 DNA MER1_type 1 324 0 550 74 0 12 chr6 106337743 106337824 -82941730 - MADE1 DNA Mariner 0 80 1 604 322 62 9 chr6 106338193 106338612 -82940942 + L1M4c LINE L1 1037 1477 -4907 226 240 0 0 chr6 106339702 106339752 -82939802 - L2 LINE L2 0 3313 3264 2350 94 0 0 chr6 106339754 106340051 -82939503 - AluSx SINE Alu -15 297 1 1273 318 42 4 chr6 106340110 106340668 -82938886 - L2 LINE L2 -180 3133 2543 1204 214 8 0 chr6 106340726 106340960 -82938594 + MLT1A1 LTR MaLR 130 365 0 650 263 116 5 chr6 106340964 106341162 -82938392 - L2 LINE L2 -790 2524 2305 769 213 0 13 chr6 106341260 106341415 -82938139 + FRAM SINE Alu 1 152 -24 22 0 0 0 chr6 106341807 106341829 -82937725 + AT_rich Low_complexity Low_complexity 1 22 0 2244 88 0 0 chr6 106342438 106342734 -82936820 + AluY SINE Alu 1 296 -15 389 94 0 0 chr6 106342852 106342905 -82936649 + MADE1 DNA Mariner 28 80 0 27 0 0 0 chr6 106344933 106344960 -82934594 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr6 106346203 106346228 -82933326 + AT_rich Low_complexity Low_complexity 1 25 0 2235 268 143 46 chr6 106346465 106346610 -82932944 + L2 LINE L2 1713 1842 -1471 1431 144 45 96 chr6 106346610 106346922 -82932632 - AluJo SINE Alu -16 296 1 2235 268 143 46 chr6 106346922 106348169 -82931385 + L2 LINE L2 1842 3306 -7 382 218 0 13 chr6 106348201 106348279 -82931275 - L2 LINE L2 -681 2633 2557 423 176 148 9 chr6 106348491 106348599 -82930955 + MER53 DNA DNA 1 123 -66 29 0 0 0 chr6 106349858 106349887 -82929667 + AT_rich Low_complexity Low_complexity 1 29 0 2085 123 0 19 chr6 106350410 106350726 -82928828 - AluSq SINE Alu -3 310 1 220 271 24 121 chr6 106351621 106351787 -82927767 - MER5A DNA MER1_type -5 184 35 1898 156 0 0 chr6 106352516 106352799 -82926755 - AluJb SINE Alu -28 284 2 22 0 0 0 chr6 106353007 106353029 -82926525 + AT_rich Low_complexity Low_complexity 1 22 0 497 277 68 76 chr6 106353763 106354222 -82925332 + L1MC/D LINE L1 4798 5252 -894 462 295 39 80 chr6 106354292 106354455 -82925099 + L1MC/D LINE L1 5340 5508 -2300 2020 152 30 28 chr6 106354455 106354818 -82924736 + THE1B LTR MaLR 1 364 0 462 295 39 80 chr6 106354818 106355142 -82924412 + L1MC/D LINE L1 5508 5807 -2001 262 268 0 0 chr6 106358076 106358147 -82921407 - L1MC4 LINE L1 -390 7652 7582 202 227 9 73 chr6 106358235 106358345 -82921209 + (TAAA)n Simple_repeat Simple_repeat 3 105 0 23 68 0 0 chr6 106358682 106358726 -82920828 + AT_rich Low_complexity Low_complexity 1 44 0 4179 222 76 16 chr6 106358925 106360023 -82919531 - L1MC4 LINE L1 -175 7867 6704 258 301 0 0 chr6 106360034 106360107 -82919447 + CT-rich Low_complexity Low_complexity 2 74 0 675 93 50 14 chr6 106360207 106360346 -82919208 + CT-rich Low_complexity Low_complexity 2 145 0 973 243 126 10 chr6 106360347 106360656 -82918898 - L1MC4a LINE L1 -1218 6590 6246 5587 187 50 16 chr6 106361020 106362838 -82916716 - L1MC1 LINE L1 0 6333 4470 253 202 139 81 chr6 106363133 106363306 -82916248 - MLT1H1 LTR MaLR -7 535 353 491 289 87 21 chr6 106363382 106363598 -82915956 - MLT1H1 LTR MaLR -309 246 18 24 32 0 0 chr6 106364781 106364812 -82914742 + AT_rich Low_complexity Low_complexity 1 31 0 288 0 0 0 chr6 106365328 106365360 -82914194 + (CA)n Simple_repeat Simple_repeat 2 33 0 225 154 0 0 chr6 106365427 106365466 -82914088 + T-rich Low_complexity Low_complexity 1 39 0 679 294 110 0 chr6 106365888 106366106 -82913448 - MIR SINE MIR -5 257 16 13822 141 34 12 chr6 106366127 106368489 -82911065 - Tigger1 DNA MER2_type -3 2415 1 203 385 44 10 chr6 106368542 106368747 -82910807 - MIR SINE MIR -49 213 2 371 322 105 45 chr6 106369046 106369378 -82910176 - L2 LINE L2 -799 2515 2164 200 81 27 0 chr6 106370288 106370299 -82909255 + (TA)n Simple_repeat Simple_repeat 2 11 -28 1213 48 0 0 chr6 106370299 106370446 -82909108 + L1PA3 LINE L1 6001 6147 -8 200 81 27 0 chr6 106370446 106370471 -82909083 + (TA)n Simple_repeat Simple_repeat 11 39 0 411 38 0 0 chr6 106370471 106370524 -82909030 + (GA)n Simple_repeat Simple_repeat 2 54 0 198 191 0 0 chr6 106371718 106371760 -82907794 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 24 0 0 0 chr6 106372616 106372640 -82906914 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr6 106374693 106374725 -82904829 + AT_rich Low_complexity Low_complexity 1 32 0 899 330 72 27 chr6 106375230 106375787 -82903767 - L2 LINE L2 -439 2875 2294 564 316 172 6 chr6 106375806 106376160 -82903394 + L2 LINE L2 2648 3060 -253 236 214 0 0 chr6 106376199 106376241 -82903313 + MER45 DNA AcHobo 1540 1581 0 279 275 73 18 chr6 106376259 106376368 -82903186 + L2 LINE L2 3083 3197 -116 702 180 31 0 chr6 106376378 106376506 -82903048 + L1MC/D LINE L1 5643 5774 -559 403 287 126 35 chr6 106376516 106376802 -82902752 - L2 LINE L2 -1191 2123 1812 26 30 0 0 chr6 106377101 106377134 -82902420 + AT_rich Low_complexity Low_complexity 1 33 0 265 313 76 0 chr6 106377535 106377666 -82901888 + MIR SINE MIR 119 259 -3 1360 269 83 12 chr6 106378006 106378485 -82901069 - L1ME3 LINE L1 -42 6120 5608 895 247 4 85 chr6 106378524 106379098 -82900456 + L1ME LINE L1 5029 5569 -601 291 324 28 0 chr6 106379110 106379181 -82900373 - Charlie8 DNA MER1_type -2344 73 1 362 239 188 34 chr6 106379183 106379300 -82900254 - MIR SINE MIR -57 151 17 27 62 0 0 chr6 106379985 106380033 -82899521 + AT_rich Low_complexity Low_complexity 1 48 0 2311 70 3 10 chr6 106382678 106382976 -82896578 + AluY SINE Alu 1 296 -15 22 0 0 0 chr6 106383251 106383273 -82896281 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 106383306 106383327 -82896227 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 106385508 106385532 -82894022 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr6 106386640 106386666 -82892888 + AT_rich Low_complexity Low_complexity 1 26 0 2315 70 3 3 chr6 106386938 106387239 -82892315 - AluSc SINE Alu -8 301 1 14393 219 18 5 chr6 106390275 106394665 -82884889 - L1PB1 LINE L1 0 6867 2412 3585 81 2 0 chr6 106394685 106395152 -82884402 - MER41A LTR ERV1 -86 468 1 6364 129 11 9 chr6 106395182 106396747 -82882807 - L1PB1 LINE L1 -4494 2369 634 1060 186 5 0 chr6 106396747 106396941 -82882613 - L1PB1 LINE L1 -6663 200 6 5522 173 47 4 chr6 106397089 106399038 -82880516 - L1PA16 LINE L1 -10 6156 4125 201 293 74 116 chr6 106399167 106399382 -82880172 + MIR SINE MIR 57 262 0 347 341 62 85 chr6 106399391 106399522 -82880032 + L2 LINE L2 3012 3136 -136 7324 42 0 3 chr6 106399522 106400602 -82878952 - L1PA4 LINE L1 0 6155 5076 347 341 62 85 chr6 106400602 106400728 -82878826 + L2 LINE L2 3136 3263 -9 183 365 170 0 chr6 106400810 106400969 -82878585 - MIR SINE MIR -3 259 74 706 205 7 26 chr6 106401092 106401243 -82878311 - FRAM SINE Alu -27 149 2 2364 40 0 13 chr6 106402157 106402455 -82877099 + L1PA5 LINE L1 5861 6154 0 191 281 62 16 chr6 106403002 106403066 -82876488 - MER5C DNA MER1_type -245 79 13 280 344 25 8 chr6 106403146 106403268 -82876286 + LTR67 LTR ERVL 417 540 -17 23 33 0 0 chr6 106404299 106404329 -82875225 + AT_rich Low_complexity Low_complexity 1 30 0 367 314 67 85 chr6 106404502 106404843 -82874711 + MLT1I LTR MaLR 71 405 -4 438 230 40 10 chr6 106406656 106406756 -82872798 + MER5A DNA MER1_type 10 112 -77 200 206 152 87 chr6 106406930 106407022 -82872532 - L2 LINE L2 -27 3286 3189 321 118 0 0 chr6 106407703 106407754 -82871800 + (CA)n Simple_repeat Simple_repeat 2 52 0 333 241 301 15 chr6 106408517 106408650 -82870904 + MER5A DNA MER1_type 7 177 -12 356 357 65 5 chr6 106408688 106408873 -82870681 + MIR SINE MIR 46 241 -21 198 161 36 54 chr6 106409157 106409213 -82870341 - MER5C DNA MER1_type -10 314 260 322 272 175 0 chr6 106409325 106409428 -82870126 - MER5C DNA MER1_type -200 124 4 30 69 0 0 chr6 106409513 106409571 -82869983 + AT_rich Low_complexity Low_complexity 1 58 0 30 93 0 0 chr6 106410017 106410103 -82869451 + AT_rich Low_complexity Low_complexity 1 86 0 543 264 81 92 chr6 106411060 106411431 -82868123 - MLT1I LTR MaLR -3 406 40 1919 115 72 0 chr6 106412021 106412300 -82867254 + AluSx SINE Alu 6 304 -8 183 80 0 0 chr6 106412769 106412794 -82866760 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1896 197 10 37 chr6 106412796 106413056 -82866498 + MLT1B LTR MaLR 1 248 -142 8056 55 3 0 chr6 106413056 106414018 -82865536 + LTR5 LTR ERVK 2 966 -3 1896 197 10 37 chr6 106414018 106414158 -82865396 + MLT1B LTR MaLR 248 390 0 335 292 89 54 chr6 106415127 106415442 -82864112 - HAL1 LINE L1 -939 1568 1243 327 49 0 0 chr6 106415645 106415686 -82863868 + (TG)n Simple_repeat Simple_repeat 1 41 0 189 171 0 0 chr6 106415709 106415744 -82863810 + CT-rich Low_complexity Low_complexity 3 37 0 1202 89 13 0 chr6 106416207 106416365 -82863189 - AluSc SINE Alu -17 292 133 202 224 0 0 chr6 106416528 106416577 -82862977 + T-rich Low_complexity Low_complexity 1 49 0 267 306 97 8 chr6 106416615 106416749 -82862805 + MLT1L LTR MaLR 131 276 -339 180 0 0 0 chr6 106417629 106417649 -82861905 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 319 284 170 7 chr6 106418216 106418357 -82861197 + MIR3 SINE MIR 32 195 -13 345 47 0 0 chr6 106418606 106418649 -82860905 + (CA)n Simple_repeat Simple_repeat 2 44 0 221 259 0 19 chr6 106419868 106419922 -82859632 + CT-rich Low_complexity Low_complexity 4 56 0 7491 33 5 0 chr6 106420713 106421654 -82857900 - L1PA4 LINE L1 -1 6154 5213 28 29 0 0 chr6 106421927 106421962 -82857592 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 106424458 106424479 -82855075 + AT_rich Low_complexity Low_complexity 1 21 0 550 286 70 19 chr6 106424695 106424908 -82854646 + MIR SINE MIR 37 260 -2 222 221 44 0 chr6 106425307 106425375 -82854179 + (TA)n Simple_repeat Simple_repeat 1 71 0 1657 198 46 0 chr6 106425649 106425998 -82853556 + MLT1A1 LTR MaLR 1 365 0 406 348 125 10 chr6 106426308 106426613 -82852941 - L3 LINE CR1 -32 1545 1206 204 219 94 0 chr6 106426635 106426699 -82852855 + MER5B DNA MER1_type 76 145 -33 340 252 57 57 chr6 106426699 106426822 -82852732 - L1MC/D LINE L1 -2263 5545 5423 55 48 0 0 chr6 106426834 106426917 -82852637 + AT_rich Low_complexity Low_complexity 1 83 0 25 0 0 0 chr6 106427071 106427096 -82852458 + AT_rich Low_complexity Low_complexity 1 25 0 720 308 98 36 chr6 106427337 106428334 -82851220 - L1MC/D LINE L1 -1797 4349 3291 1229 67 0 6 chr6 106429266 106429430 -82850124 - L1PA7 LINE L1 -6 6148 5986 351 280 24 32 chr6 106430053 106430178 -82849376 + L2 LINE L2 3189 3312 -1 260 294 0 22 chr6 106431415 106431507 -82848047 + GA-rich Low_complexity Low_complexity 1 90 0 22 56 0 0 chr6 106431603 106431639 -82847915 + AT_rich Low_complexity Low_complexity 1 36 0 1876 160 0 3 chr6 106432024 106432330 -82847224 - AluSx SINE Alu -7 305 1 1426 68 0 16 chr6 106432348 106432539 -82847015 + L1PA7 LINE L1 5956 6143 -11 189 0 0 0 chr6 106432712 106432733 -82846821 + (CA)n Simple_repeat Simple_repeat 2 22 0 281 231 56 46 chr6 106432812 106432920 -82846634 - L1MC/D LINE L1 -1946 5862 5754 21 57 0 0 chr6 106433199 106433234 -82846320 + AT_rich Low_complexity Low_complexity 1 35 0 1463 188 103 9 chr6 106433304 106433634 -82845920 + MER46B DNA MER2_type 1 236 0 188 299 15 30 chr6 106433911 106433978 -82845576 - L3 LINE CR1 -980 597 532 379 334 142 30 chr6 106434016 106434348 -82845206 - L3 LINE CR1 -1125 452 84 511 227 9 9 chr6 106434351 106434461 -82845093 + L2 LINE L2 3200 3309 -4 4368 265 77 28 chr6 106435810 106437357 -82842197 + L1ME1 LINE L1 34 1680 -4716 2653 23 0 7 chr6 106437357 106437663 -82841891 - AluYa5 SINE Alu -7 304 1 4368 265 77 28 chr6 106437663 106437879 -82841675 + L1ME1 LINE L1 1680 1884 -4512 3522 115 0 4 chr6 106437880 106438393 -82841161 - MER9 LTR ERVK 0 511 1 4111 185 49 73 chr6 106438393 106439594 -82839960 - HERVK9 LTR ERVK 0 5916 4745 328 219 57 32 chr6 106439640 106439763 -82839791 + L1ME1 LINE L1 1879 2004 -4392 * 2322 196 88 8 chr6 106439760 106440386 -82839168 + L1ME1 LINE L1 4691 5366 -849 1283 143 32 54 chr6 106440398 106440677 -82838877 + L1MA6 LINE L1 6028 6300 0 26 0 0 0 chr6 106440680 106440706 -82838848 + AT_rich Low_complexity Low_complexity 1 26 0 435 199 23 23 chr6 106440738 106440869 -82838685 - L1MA10 LINE L1 0 6334 6204 42 0 0 0 chr6 106440872 106440914 -82838640 + AT_rich Low_complexity Low_complexity 1 42 0 3037 243 32 15 chr6 106440930 106441800 -82837754 + L1ME1 LINE L1 5364 6403 0 230 260 0 0 chr6 106441834 106441884 -82837670 + GA-rich Low_complexity Low_complexity 3 52 0 518 304 121 42 chr6 106443112 106443669 -82835885 + MLT1H1 LTR MaLR 2 555 0 5898 157 9 38 chr6 106444254 106445612 -82833942 - L1MA4 LINE L1 -7 6293 4974 * 8122 163 15 20 chr6 106445610 106446987 -82832567 + L1 LINE L1 3394 4764 -1382 508 227 118 0 chr6 106446987 106447106 -82832448 + FLAM_A SINE Alu 1 133 0 8122 163 15 20 chr6 106447106 106447297 -82832257 + L1 LINE L1 4764 4954 -1192 1756 90 0 0 chr6 106447513 106447758 -82831796 + L1PA13 LINE L1 5911 6155 -8 314 278 127 54 chr6 106447927 106448252 -82831302 + MLT1H1-int LTR MaLR 1028 1715 -20 774 292 114 38 chr6 106448308 106448781 -82830773 + MLT1H1 LTR MaLR 41 549 -6 297 192 55 0 chr6 106450002 106450075 -82829479 + L1MA7 LINE L1 6203 6279 -12 281 293 49 16 chr6 106450261 106450384 -82829170 - L2 LINE L2 -4 3309 3183 537 176 0 0 chr6 106451016 106451124 -82828430 + GA-rich Low_complexity Low_complexity 3 110 0 370 315 9 9 chr6 106451124 106451235 -82828319 + G-rich Low_complexity Low_complexity 3 113 0 568 276 122 19 chr6 106451607 106451821 -82827733 + MIR SINE MIR 22 257 -5 2457 57 3 3 chr6 106451960 106452261 -82827293 + AluSp SINE Alu 1 301 -12 484 291 21 43 chr6 106452522 106452756 -82826798 + Charlie7 DNA MER1_type 263 491 -2121 475 319 133 6 chr6 106452816 106453133 -82826421 + LTR16B LTR ERVL 1 357 -93 277 269 79 48 chr6 106453137 106453311 -82826243 + LTR16A LTR ERVL 292 447 -3 341 305 43 28 chr6 106453635 106453776 -82825778 - L2 LINE L2 -8 3305 3163 499 292 148 4 chr6 106453780 106454016 -82825538 + L2 LINE L2 2955 3224 -89 571 170 20 0 chr6 106454188 106454288 -82825266 + FLAM_A SINE Alu 32 133 -9 357 269 28 19 chr6 106454335 106454443 -82825111 + Charlie7 DNA MER1_type 595 703 -1909 8913 183 30 17 chr6 106454566 106457336 -82822218 - L1PB4 LINE L1 0 6156 3346 24 0 0 0 chr6 106457394 106457418 -82822136 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 106457985 106458007 -82821547 + AT_rich Low_complexity Low_complexity 1 22 0 1823 275 90 36 chr6 106458452 106459231 -82820323 + L2 LINE L2 1796 2616 -698 446 253 58 39 chr6 106459763 106459917 -82819637 + L2 LINE L2 2652 2808 -506 265 274 0 0 chr6 106459925 106459998 -82819556 - MLT1K LTR MaLR -382 206 134 1700 179 19 3 chr6 106460279 106460603 -82818951 + L1PA15 LINE L1 5837 6165 0 220 231 22 110 chr6 106463043 106463086 -82816468 - MIR3 SINE MIR -14 194 162 909 222 16 0 chr6 106463086 106463271 -82816283 + MER5A DNA MER1_type 2 189 0 220 231 22 110 chr6 106463271 106463318 -82816236 - MIR3 SINE MIR -46 162 112 7192 31 1 0 chr6 106463448 106464338 -82815216 - L1P LINE L1 -736 5419 4524 6307 33 1 0 chr6 106464338 106465088 -82814466 + L1PA4 LINE L1 5399 6152 -3 240 287 191 0 chr6 106465909 106466003 -82813551 + MIR SINE MIR 69 180 -82 882 171 7 20 chr6 106466322 106466474 -82813080 - AluJo SINE Alu -162 150 1 389 347 45 10 chr6 106467246 106467445 -82812109 + MIR SINE MIR 23 228 -34 598 271 41 12 chr6 106468466 106468636 -82810918 + MER5B DNA MER1_type 1 175 -3 21 0 0 0 chr6 106468818 106468839 -82810715 + AT_rich Low_complexity Low_complexity 1 21 0 214 200 0 0 chr6 106470443 106470483 -82809071 + T-rich Low_complexity Low_complexity 1 40 0 688 246 46 6 chr6 106471484 106471659 -82807895 - MIR SINE MIR -28 234 53 241 325 29 49 chr6 106473356 106473498 -82806056 - MIR SINE MIR -66 142 19 258 336 185 17 chr6 106474351 106474708 -82804846 - L2 LINE L2 -411 2903 2487 186 71 0 0 chr6 106474786 106474814 -82804740 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 331 328 159 10 chr6 106474964 106475165 -82804389 - MIR SINE MIR 0 262 32 311 304 79 83 chr6 106475870 106476123 -82803431 - L2 LINE L2 -15 3257 3006 1960 107 7 4 chr6 106476158 106476438 -82803116 + AluSx SINE Alu 1 281 -31 279 0 0 0 chr6 106476442 106476473 -82803081 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 286 216 0 128 chr6 106476548 106476650 -82802904 + Tigger5 DNA MER2_type 2 90 -2233 262 188 0 0 chr6 106476752 106476800 -82802754 - Tigger5 DNA MER2_type -5 2318 2271 501 179 0 0 chr6 106476837 106476921 -82802633 + Tigger5 DNA MER2_type 2237 2320 -3 21 0 0 0 chr6 106478797 106478818 -82800736 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr6 106481945 106481965 -82797589 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 205 369 63 9 chr6 106484218 106484329 -82795225 - MIR SINE MIR -64 144 28 380 318 123 41 chr6 106484643 106484863 -82794691 + MIR SINE MIR 11 248 -14 2429 78 0 0 chr6 106485734 106486040 -82793514 - AluSg SINE Alu -4 306 1 536 239 85 32 chr6 106487214 106487402 -82792152 - MER63A DNA MER1_type -12 198 1 244 324 129 14 chr6 106488145 106488355 -82791199 + L2 LINE L2 2250 2483 -831 234 0 0 0 chr6 106488362 106488388 -82791166 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 493 98 9 125 chr6 106488398 106488510 -82791044 - FRAM SINE Alu -31 145 47 23 33 0 0 chr6 106488965 106488995 -82790559 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 106494230 106494251 -82785303 + AT_rich Low_complexity Low_complexity 1 21 0 2065 109 0 11 chr6 106494756 106495074 -82784480 + AluSq SINE Alu 1 315 0 24 67 0 0 chr6 106496077 106496122 -82783432 + AT_rich Low_complexity Low_complexity 1 45 0 47 19 0 0 chr6 106498335 106498389 -82781165 + AT_rich Low_complexity Low_complexity 1 54 0 25 0 0 0 chr6 106498463 106498488 -82781066 + AT_rich Low_complexity Low_complexity 1 25 0 202 256 11 11 chr6 106500491 106500581 -82778973 + GA-rich Low_complexity Low_complexity 1 90 0 183 172 0 103 chr6 106500961 106501019 -82778535 - MER5C DNA MER1_type -196 128 77 488 270 13 57 chr6 106502100 106502259 -82777295 - MER69A DNA AcHobo 0 177 26 980 246 44 0 chr6 106506583 106506811 -82772743 + Charlie1 DNA MER1_type 1 238 -2523 459 235 44 0 chr6 106506795 106506931 -82772623 + Charlie1 DNA MER1_type 2620 2761 0 * 267 333 188 11 chr6 106506936 106507122 -82772432 - MIR SINE MIR 0 262 44 352 310 62 0 chr6 106507179 106507308 -82772246 - L2 LINE L2 0 3313 3177 21 57 0 0 chr6 106508118 106508153 -82771401 + AT_rich Low_complexity Low_complexity 1 35 0 206 77 0 103 chr6 106508459 106508498 -82771056 + (CAAAAA)n Simple_repeat Simple_repeat 5 39 0 205 179 0 0 chr6 106508856 106508895 -82770659 + (TATATG)n Simple_repeat Simple_repeat 5 43 0 33 43 0 0 chr6 106509721 106509768 -82769786 + AT_rich Low_complexity Low_complexity 1 47 0 27 0 0 0 chr6 106509977 106510004 -82769550 + AT_rich Low_complexity Low_complexity 1 27 0 198 71 0 0 chr6 106510364 106510392 -82769162 + (CAATA)n Simple_repeat Simple_repeat 3 30 0 21 36 0 0 chr6 106511272 106511300 -82768254 + AT_rich Low_complexity Low_complexity 1 28 0 28 61 0 0 chr6 106511358 106511407 -82768147 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr6 106511562 106511583 -82767971 + AT_rich Low_complexity Low_complexity 1 21 0 2040 205 106 26 chr6 106515574 106516150 -82763404 + MLT1E2 LTR MaLR 5 626 0 245 222 0 0 chr6 106518081 106518126 -82761428 - L2 LINE L2 -8 3305 3261 257 304 63 0 chr6 106518422 106518501 -82761053 - L2 LINE L2 -2 3270 3187 357 289 26 26 chr6 106518800 106518952 -82760602 - L1MC4a LINE L1 -1961 5847 5696 744 269 98 27 chr6 106520092 106520354 -82759200 + MIR SINE MIR 2 262 0 322 310 78 17 chr6 106520376 106520492 -82759062 - MER5B DNA MER1_type -49 129 7 31 82 0 0 chr6 106521452 106521525 -82758029 + AT_rich Low_complexity Low_complexity 1 73 0 21 36 0 0 chr6 106521936 106521964 -82757590 + AT_rich Low_complexity Low_complexity 1 28 0 4327 111 101 86 chr6 106521984 106523328 -82756226 + pTR5 LTR ERV1 743 2438 0 22 0 0 0 chr6 106523834 106523856 -82755698 + AT_rich Low_complexity Low_complexity 1 22 0 207 45 0 68 chr6 106523916 106523960 -82755594 + (GAAAA)n Simple_repeat Simple_repeat 4 44 0 3627 64 4 12 chr6 106524040 106524523 -82755031 + L1PA7 LINE L1 5674 6152 -2 895 264 10 0 chr6 106525385 106525593 -82753961 + MER58A DNA MER1_type 15 224 0 230 71 0 24 chr6 106525664 106525706 -82753848 + (CA)n Simple_repeat Simple_repeat 2 42 0 561 337 133 7 chr6 106526638 106527046 -82752508 + L2 LINE L2 1611 2079 -1235 1725 71 4 0 chr6 106527046 106527284 -82752270 - L1PA13 LINE L1 0 6163 5925 561 337 133 7 chr6 106527284 106527311 -82752243 + L2 LINE L2 2079 2101 -1213 2907 219 59 13 chr6 106527337 106528100 -82751454 + L1MB8 LINE L1 5380 6177 -1 302 359 39 39 chr6 106528407 106528563 -82750991 + L2 LINE L2 3117 3272 0 22 35 0 0 chr6 106528833 106528862 -82750692 + AT_rich Low_complexity Low_complexity 1 29 0 1602 103 0 22 chr6 106528940 106529172 -82750382 + AluY SINE Alu 85 311 0 2740 3 0 0 chr6 106531005 106531306 -82748248 + AluYa5 SINE Alu 1 301 -10 250 241 0 17 chr6 106531679 106531737 -82747817 + MIR SINE MIR 57 113 -149 22 35 0 0 chr6 106531762 106531791 -82747763 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 106532687 106532724 -82746830 + AT_rich Low_complexity Low_complexity 1 37 0 224 261 0 11 chr6 106534554 106534642 -82744912 + GA-rich Low_complexity Low_complexity 2 88 0 23 78 0 0 chr6 106534989 106535040 -82744514 + AT_rich Low_complexity Low_complexity 1 51 0 360 308 91 67 chr6 106535187 106535648 -82743906 - L1M4 LINE L1 -1239 4907 4436 2061 216 15 29 chr6 106535682 106535938 -82743616 + L1MA9 LINE L1 5521 5768 -544 344 71 18 0 chr6 106535938 106535994 -82743560 + (TA)n Simple_repeat Simple_repeat 2 58 0 2061 216 15 29 chr6 106535994 106536255 -82743299 + L1MA9 LINE L1 5768 6031 -281 711 237 23 19 chr6 106536379 106536594 -82742960 + L1MA9 LINE L1 6059 6274 -38 21 36 0 0 chr6 106536594 106536622 -82742932 + AT_rich Low_complexity Low_complexity 1 28 0 348 271 81 1 chr6 106536677 106536823 -82742731 - MIR SINE MIR -50 212 57 271 122 0 0 chr6 106538380 106538429 -82741125 - L1 LINE L1 -2852 3294 3246 5482 113 23 42 chr6 106538431 106538561 -82740993 + L1PA14 LINE L1 5256 5387 -774 2623 39 0 0 chr6 106538561 106538869 -82740685 + AluY SINE Alu 1 308 -3 5482 113 23 42 chr6 106538869 106539645 -82739909 + L1PA14 LINE L1 5387 6145 -16 225 259 160 61 chr6 106539780 106540043 -82739511 + L1ME4a LINE L1 5817 6105 -16 2091 156 24 0 chr6 106540297 106540637 -82738917 - MER7A DNA MER2_type 0 346 1 840 134 64 37 chr6 106540736 106540923 -82738631 - L1MA4 LINE L1 0 6300 6109 24 53 0 0 chr6 106541024 106541062 -82738492 + AT_rich Low_complexity Low_complexity 1 38 0 1633 314 100 24 chr6 106541222 106542083 -82737471 + L2 LINE L2 33 958 -2356 297 227 0 0 chr6 106542153 106542219 -82737335 - LTR33A LTR ERVL -44 479 414 583 324 188 0 chr6 106542591 106542884 -82736670 + L2 LINE L2 2322 2669 -645 284 237 32 103 chr6 106542902 106543058 -82736496 - L2 LINE L2 -107 3206 3062 21 0 0 0 chr6 106543183 106543204 -82736350 + AT_rich Low_complexity Low_complexity 1 21 0 573 295 163 45 chr6 106544163 106544677 -82734877 + L2 LINE L2 2694 3280 -33 2067 106 7 17 chr6 106548502 106548803 -82730751 - AluSx SINE Alu -14 298 1 2077 116 7 0 chr6 106549939 106550231 -82729323 + AluSg1 SINE Alu 1 294 -15 1564 151 91 0 chr6 106550238 106550523 -82729031 - Tigger1 DNA MER2_type -110 2308 1998 887 185 84 111 chr6 106550524 106550822 -82728732 - AluSx SINE Alu -9 303 14 11571 153 29 9 chr6 106550822 106552794 -82726760 - Tigger1 DNA MER2_type -405 2013 1 2814 3 0 0 chr6 106554427 106554735 -82724819 - AluY SINE Alu -3 308 1 208 297 14 27 chr6 106557719 106557793 -82721761 + MIR SINE MIR 184 256 -6 23 0 0 0 chr6 106558087 106558110 -82721444 + AT_rich Low_complexity Low_complexity 1 23 0 1185 300 62 50 chr6 106558587 106559399 -82720155 - L2 LINE L2 0 3313 2491 336 305 26 40 chr6 106560689 106560840 -82718714 + MER5A DNA MER1_type 1 149 -40 398 256 0 11 chr6 106560941 106561031 -82718523 + LTR16A LTR ERVL 360 448 -2 456 262 40 16 chr6 106561492 106561618 -82717936 + MIR SINE MIR 74 202 -60 24 0 0 0 chr6 106563193 106563217 -82716337 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 106564866 106564891 -82714663 + AT_rich Low_complexity Low_complexity 1 25 0 381 307 87 0 chr6 106565751 106565878 -82713676 + L2 LINE L2 3134 3271 -1 201 350 89 32 chr6 106566268 106566391 -82713163 + L2 LINE L2 3184 3313 0 * 266 273 26 0 chr6 106566385 106566462 -82713092 + L3 LINE CR1 1326 1404 -173 323 336 160 8 chr6 106566472 106566740 -82712814 - L3 LINE CR1 -338 1239 931 2366 283 124 29 chr6 106566743 106568014 -82711540 + L2 LINE L2 1916 3307 -6 25 65 0 0 chr6 106569280 106569326 -82710228 + AT_rich Low_complexity Low_complexity 1 46 0 3490 135 30 22 chr6 106569727 106570362 -82709192 - L1MA5 LINE L1 -5 6295 5656 229 341 23 0 chr6 106570860 106570948 -82708606 + L2 LINE L2 1863 1952 -1362 21 57 0 0 chr6 106571860 106571895 -82707659 + AT_rich Low_complexity Low_complexity 1 35 0 5107 141 21 4 chr6 106572460 106573299 -82706255 - L1PA15 LINE L1 -8 6157 5304 3445 206 72 1 chr6 106573318 106574115 -82705439 + L1PA15 LINE L1 4438 5290 -856 21 0 0 0 chr6 106575086 106575107 -82704447 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 106575229 106575251 -82704303 + AT_rich Low_complexity Low_complexity 1 22 0 2118 106 0 3 chr6 106575992 106576276 -82703278 - AluSc SINE Alu -26 283 1 317 263 10 30 chr6 106577501 106577600 -82701954 + GA-rich Low_complexity Low_complexity 4 100 0 255 236 64 0 chr6 106578431 106578588 -82700966 + (TA)n Simple_repeat Simple_repeat 1 167 0 229 299 96 52 chr6 106579115 106579211 -82700343 - MIR SINE MIR -93 115 18 217 321 0 12 chr6 106579729 106579813 -82699741 + (TA)n Simple_repeat Simple_repeat 2 84 0 1135 181 35 17 chr6 106579979 106580211 -82699343 + MER46A DNA MER2_type 1 236 0 226 0 59 0 chr6 106583682 106583716 -82695838 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 922 216 25 5 chr6 106587150 106587349 -82692205 - MLT1B LTR MaLR -1 389 187 352 157 0 3 chr6 106587359 106587426 -82692128 - MLT1A2 LTR MaLR -303 71 1 21 0 0 0 chr6 106587914 106587935 -82691619 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 106588016 106588047 -82691507 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr6 106588721 106588743 -82690811 + AT_rich Low_complexity Low_complexity 1 22 0 1129 297 74 10 chr6 106590589 106591007 -82688547 + LTR16A LTR ERVL 1 445 -5 202 238 0 0 chr6 106591332 106591374 -82688180 + MIR SINE MIR 208 249 -13 206 339 0 0 chr6 106591505 106591561 -82687993 - MIR SINE MIR -129 133 78 209 329 82 0 chr6 106591658 106591743 -82687811 - L2 LINE L2 -8 3264 3173 2525 103 0 3 chr6 106592308 106592677 -82686877 + L1PA13 LINE L1 5791 6158 -5 24 53 0 0 chr6 106592904 106592942 -82686612 + AT_rich Low_complexity Low_complexity 1 38 0 232 357 62 21 chr6 106593258 106593421 -82686133 - MIR SINE MIR -65 197 18 369 177 50 71 chr6 106594065 106594206 -82685348 - L1MB7 LINE L1 -16 6168 6031 2049 116 10 3 chr6 106595767 106596059 -82683495 - AluSg SINE Alu -16 294 1 206 211 35 18 chr6 106596623 106596680 -82682874 + (CAAA)n Simple_repeat Simple_repeat 3 60 0 2221 102 0 20 chr6 106597212 106597517 -82682037 - AluSq SINE Alu -14 299 1 37 39 0 0 chr6 106597664 106597715 -82681839 + AT_rich Low_complexity Low_complexity 1 51 0 39 80 0 0 chr6 106598854 106598942 -82680612 + AT_rich Low_complexity Low_complexity 1 88 0 504 72 52 0 chr6 106599403 106599500 -82680054 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 209 310 62 47 chr6 106600314 106600443 -82679111 - MIR SINE MIR -61 147 17 27 62 0 0 chr6 106601538 106601586 -82677968 + AT_rich Low_complexity Low_complexity 1 48 0 33 0 0 0 chr6 106601972 106602005 -82677549 + AT_rich Low_complexity Low_complexity 1 33 0 191 333 180 9 chr6 106602646 106602757 -82676797 + MER5B DNA MER1_type 4 133 -45 3678 191 63 20 chr6 106602908 106603794 -82675760 + L1MB8 LINE L1 5289 6178 0 2245 92 0 35 chr6 106603802 106604117 -82675437 + AluSq SINE Alu 1 304 -9 227 111 0 0 chr6 106604273 106604309 -82675245 + L1MA3 LINE L1 6270 6305 0 218 355 74 10 chr6 106605790 106605914 -82673640 + MIR SINE MIR 3 135 -73 563 267 47 31 chr6 106607209 106607400 -82672154 + MIR SINE MIR 64 257 -5 21 57 0 0 chr6 106607751 106607786 -82671768 + AT_rich Low_complexity Low_complexity 1 35 0 210 71 0 0 chr6 106608706 106608734 -82670820 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 315 0 0 0 chr6 106608742 106608777 -82670777 + (CA)n Simple_repeat Simple_repeat 1 35 0 453 356 49 34 chr6 106609092 106609359 -82670195 + L2 LINE L2 3002 3272 0 2278 65 0 59 chr6 106610423 106610746 -82668808 + AluY SINE Alu 1 304 -7 1260 209 72 33 chr6 106610749 106611080 -82668474 - MER2 DNA MER2_type 0 344 1 31 0 0 0 chr6 106612755 106612786 -82666768 + AT_rich Low_complexity Low_complexity 1 31 0 534 308 108 17 chr6 106614206 106614446 -82665108 + MIR SINE MIR 1 262 0 1158 193 21 30 chr6 106614893 106615126 -82664428 + AluJb SINE Alu 1 231 -81 1553 197 17 7 chr6 106615703 106615998 -82663556 - AluJo SINE Alu -12 300 3 910 231 52 19 chr6 106616637 106616849 -82662705 + MER20 DNA MER1_type 1 219 0 370 327 45 0 chr6 106617422 106617532 -82662022 - L2 LINE L2 -4 3268 3154 322 288 44 56 chr6 106618206 106618366 -82661188 - MIR SINE MIR -79 183 26 244 193 158 0 chr6 106619184 106619241 -82660313 + MER94 DNA DNA 5 70 -64 183 129 0 0 chr6 106621273 106621304 -82658250 + (T)n Simple_repeat Simple_repeat 1 31 0 1626 158 11 78 chr6 106621720 106622080 -82657474 - MER1B DNA MER1_type -1 336 1 243 152 0 0 chr6 106622746 106622792 -82656762 + LTR66 LTR ERVL 394 439 -171 288 0 0 0 chr6 106622823 106622855 -82656699 + (TG)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr6 106622881 106622902 -82656652 + (TG)n Simple_repeat Simple_repeat 2 22 0 358 211 54 27 chr6 106622944 106623061 -82656493 - MIR SINE MIR -62 146 37 186 162 27 0 chr6 106623221 106623258 -82656296 - L2 LINE L2 -216 3056 3019 1313 219 49 0 chr6 106623259 106623547 -82656007 - AluJo SINE Alu -10 302 1 23 0 0 0 chr6 106625221 106625244 -82654310 + AT_rich Low_complexity Low_complexity 1 23 0 245 73 0 24 chr6 106625270 106625311 -82654243 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 1620 158 122 15 chr6 106625311 106625647 -82653907 - THE1C LTR MaLR -3 372 1 6834 190 131 3 chr6 106625647 106627106 -82652448 - THE1C-int LTR MaLR 0 1651 6 1859 176 42 6 chr6 106627111 106627469 -82652085 - THE1C LTR MaLR 0 375 5 659 12 0 12 chr6 106627471 106627552 -82652002 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 358 274 52 7 chr6 106627710 106627863 -82651691 - L1ME4a LINE L1 -225 5896 5737 341 331 38 72 chr6 106628382 106628675 -82650879 - L2 LINE L2 -528 2786 2504 310 273 0 0 chr6 106628733 106628810 -82650744 - MIR SINE MIR 0 262 186 437 306 102 21 chr6 106628816 106629002 -82650552 - MIR SINE MIR -11 251 51 794 263 124 65 chr6 106629385 106630279 -82649275 + L1MC4 LINE L1 7094 8040 -2 21 0 0 0 chr6 106632518 106632539 -82647015 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 106634446 106634468 -82645086 + AT_rich Low_complexity Low_complexity 1 22 0 342 0 0 0 chr6 106635135 106635173 -82644381 + (CA)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr6 106639000 106639022 -82640532 + AT_rich Low_complexity Low_complexity 1 22 0 325 306 10 0 chr6 106639230 106639328 -82640226 + (TG)n Simple_repeat Simple_repeat 2 100 0 1398 219 7 23 chr6 106640090 106640392 -82639162 - AluJo SINE Alu -10 302 6 242 219 49 37 chr6 106641541 106641623 -82637931 - L1ME4a LINE L1 -517 5604 5522 22 0 0 0 chr6 106642308 106642330 -82637224 + AT_rich Low_complexity Low_complexity 1 22 0 965 146 5 60 chr6 106643052 106643237 -82636317 + FAM SINE Alu 1 175 0 281 263 132 44 chr6 106643981 106644095 -82635459 + MIR SINE MIR 8 131 -131 290 185 12 0 chr6 106644116 106644197 -82635357 + (TA)n Simple_repeat Simple_repeat 1 82 0 204 40 0 0 chr6 106644208 106644233 -82635321 + (GA)n Simple_repeat Simple_repeat 2 26 0 189 304 18 0 chr6 106644325 106644381 -82635173 + MIR SINE MIR 180 236 -26 243 229 138 18 chr6 106644658 106644767 -82634787 - L1ME4a LINE L1 -81 6040 5919 631 310 93 9 chr6 106645088 106645314 -82634240 - MIR SINE MIR -2 260 16 354 214 0 0 chr6 106645327 106645411 -82634143 + (TA)n Simple_repeat Simple_repeat 1 84 0 25 0 0 0 chr6 106645594 106645619 -82633935 + AT_rich Low_complexity Low_complexity 1 25 0 227 114 29 0 chr6 106645951 106645986 -82633568 + MER94 DNA DNA 99 134 0 350 230 0 53 chr6 106646123 106646236 -82633318 + MIR SINE MIR 99 205 -57 25 51 0 0 chr6 106647198 106647237 -82632317 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr6 106647285 106647308 -82632246 + AT_rich Low_complexity Low_complexity 1 23 0 1181 201 25 40 chr6 106648351 106648674 -82630880 - MER33 DNA MER1_type -6 318 1 31 0 0 0 chr6 106648682 106648713 -82630841 + AT_rich Low_complexity Low_complexity 1 31 0 469 318 109 27 chr6 106648847 106649067 -82630487 + MIR SINE MIR 24 261 -1 32 0 0 0 chr6 106652485 106652517 -82627037 + AT_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr6 106655771 106655809 -82623745 + AT_rich Low_complexity Low_complexity 1 38 0 21 71 0 0 chr6 106656420 106656462 -82623092 + GC_rich Low_complexity Low_complexity 1 42 0 28 79 0 0 chr6 106658670 106658733 -82620821 + GC_rich Low_complexity Low_complexity 1 63 0 23 33 0 0 chr6 106662920 106662950 -82616604 + AT_rich Low_complexity Low_complexity 1 30 0 234 208 57 0 chr6 106663424 106663477 -82616077 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 1254 217 74 107 chr6 106667581 106668160 -82611394 - MLT1F1 LTR MaLR 0 567 8 486 287 85 26 chr6 106668590 106669005 -82610549 - L1ME3A LINE L1 -3 6161 5710 1285 219 58 26 chr6 106669036 106669378 -82610176 + MLT1A1 LTR MaLR 1 353 -12 1470 256 55 10 chr6 106669464 106669971 -82609583 - L1ME3A LINE L1 -762 5384 4855 1460 229 28 33 chr6 106670176 106670252 -82609302 + MSTD LTR MaLR 1 76 -320 2206 122 0 0 chr6 106670252 106670555 -82608999 + AluSq SINE Alu 1 303 -10 1460 229 28 33 chr6 106670555 106670876 -82608678 + MSTD LTR MaLR 76 396 0 616 314 227 3 chr6 106671002 106671513 -82608041 + L2 LINE L2 2683 3313 0 399 326 39 55 chr6 106672127 106672308 -82607246 - MER5B DNA MER1_type 0 178 1 736 160 47 0 chr6 106672316 106672466 -82607088 - Charlie5 DNA MER1_type -27 2585 2429 349 169 0 0 chr6 106672469 106672528 -82607026 - Charlie5 DNA MER1_type -2548 64 6 2227 159 56 20 chr6 106672528 106672937 -82606617 + MSTC LTR MaLR 1 424 -4 2305 208 39 30 chr6 106672954 106673516 -82606038 - L1MD2 LINE L1 -247 6112 5546 1364 170 11 17 chr6 106673514 106673821 -82605733 + L1MD2 LINE L1 5255 5529 -713 * 599 216 36 103 chr6 106673820 106674149 -82605405 - L1MD2 LINE L1 -931 5215 4909 * 247 317 12 0 chr6 106674341 106674423 -82605131 + CT-rich Low_complexity Low_complexity 2 84 0 313 341 100 31 chr6 106674426 106674687 -82604867 - L2 LINE L2 -38 3275 2997 8319 92 11 0 chr6 106674687 106676613 -82602941 + L1PA7 LINE L1 4216 6150 -4 27 73 0 0 chr6 106676665 106676720 -82602834 + AT_rich Low_complexity Low_complexity 1 55 0 183 156 0 0 chr6 106677040 106677072 -82602482 + (TG)n Simple_repeat Simple_repeat 1 32 0 335 147 0 13 chr6 106677073 106677148 -82602406 + (TA)n Simple_repeat Simple_repeat 2 75 0 331 325 80 35 chr6 106677977 106678177 -82601377 + MIR SINE MIR 54 262 0 24 0 0 0 chr6 106678212 106678236 -82601318 + AT_rich Low_complexity Low_complexity 1 24 0 237 305 85 0 chr6 106679316 106679398 -82600156 + L2 LINE L2 410 498 -2816 311 0 26 0 chr6 106679408 106679447 -82600107 + (CA)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr6 106679629 106679652 -82599902 + AT_rich Low_complexity Low_complexity 1 23 0 262 279 81 56 chr6 106680131 106680328 -82599226 - L1MD2 LINE L1 -1998 4148 3947 336 155 14 28 chr6 106680347 106680418 -82599136 + MLT1A1 LTR MaLR 295 364 -1 5636 229 55 89 chr6 106680537 106684586 -82594968 - L1MB5 LINE L1 -11 6163 2259 190 282 244 0 chr6 106684695 106684773 -82594781 - MIR SINE MIR -27 235 139 571 251 113 35 chr6 106685486 106685689 -82593865 + MIR SINE MIR 35 253 -9 282 29 0 0 chr6 106685733 106685768 -82593786 + (GA)n Simple_repeat Simple_repeat 2 36 0 1712 155 65 39 chr6 106685808 106686163 -82593391 - THE1B LTR MaLR 0 364 1 42 20 0 0 chr6 106690006 106690055 -82589499 + AT_rich Low_complexity Low_complexity 1 49 0 986 311 59 22 chr6 106690964 106691424 -82588130 + LTR33 LTR ERVL 45 521 0 192 278 100 0 chr6 106692039 106692129 -82587425 + L2 LINE L2 1990 2088 -1226 237 308 11 22 chr6 106692171 106692262 -82587292 + CT-rich Low_complexity Low_complexity 1 90 0 668 124 0 0 chr6 106692628 106692733 -82586821 - L1MA3 LINE L1 0 6305 6201 180 0 0 0 chr6 106693402 106693422 -82586132 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 240 340 292 12 chr6 106693573 106693905 -82585649 + L2 LINE L2 2805 3229 -43 327 275 106 57 chr6 106694177 106694574 -82584980 + LTR33 LTR ERVL 5 521 0 35 83 0 0 chr6 106695005 106695089 -82584465 + AT_rich Low_complexity Low_complexity 1 84 0 1597 157 82 0 chr6 106695137 106695417 -82584137 - AluSx SINE Alu -9 303 1 2371 91 3 0 chr6 106697823 106698130 -82581424 + AluY SINE Alu 1 308 -3 444 77 0 0 chr6 106698252 106698317 -82581237 + (TG)n Simple_repeat Simple_repeat 2 66 0 342 250 60 0 chr6 106698475 106698559 -82580995 + L2 LINE L2 3221 3309 -4 670 181 43 7 chr6 106698720 106698858 -82580696 + MIR3 SINE MIR 57 199 -9 1969 244 32 56 chr6 106699610 106700360 -82579194 - L1ME1 LINE L1 -5 6161 5430 600 237 18 6 chr6 106700362 106700531 -82579023 + L1M LINE L1 5254 5424 -738 24 53 0 0 chr6 106700844 106700882 -82578672 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr6 106701436 106701466 -82578088 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 106701676 106701697 -82577857 + AT_rich Low_complexity Low_complexity 1 21 0 385 96 14 27 chr6 106701791 106701864 -82577690 + (TATG)n Simple_repeat Simple_repeat 2 73 0 1817 176 20 15 chr6 106701873 106702214 -82577340 - MER2 DNA MER2_type 0 344 2 231 268 78 54 chr6 106702244 106702449 -82577105 - L1ME1 LINE L1 -1813 4333 4124 27 0 0 0 chr6 106702558 106702585 -82576969 + AT_rich Low_complexity Low_complexity 1 27 0 194 188 60 51 chr6 106702862 106702948 -82576606 + MIR SINE MIR 30 116 -92 2735 85 6 3 chr6 106703105 106703468 -82576086 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr6 106703542 106703564 -82575990 + AT_rich Low_complexity Low_complexity 1 22 0 228 371 23 0 chr6 106703623 106703755 -82575799 + MIR SINE MIR 57 191 -71 322 332 54 27 chr6 106703800 106704023 -82575531 - LTR33 LTR ERVL 0 521 293 240 291 13 119 chr6 106704973 106705124 -82574430 + MIR SINE MIR 71 205 -57 2360 71 0 3 chr6 106705665 106705961 -82573593 + AluY SINE Alu 3 297 -14 357 320 28 44 chr6 106705973 106706154 -82573400 - L2 LINE L2 -167 3146 2969 915 321 36 47 chr6 106706369 106706926 -82572628 - L2 LINE L2 -552 2762 2212 21 36 0 0 chr6 106707342 106707370 -82572184 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr6 106707614 106707635 -82571919 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr6 106708676 106708699 -82570855 + AT_rich Low_complexity Low_complexity 1 23 0 797 203 44 16 chr6 106709169 106709351 -82570203 + MER5A DNA MER1_type 3 189 0 424 320 5 73 chr6 106710107 106710313 -82569241 + MIR SINE MIR 68 259 -3 1688 157 117 3 chr6 106710320 106710644 -82568910 - MER46B DNA MER2_type 0 236 1 23 54 0 0 chr6 106710777 106710814 -82568740 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr6 106711301 106711333 -82568221 + AT_rich Low_complexity Low_complexity 1 32 0 501 254 65 0 chr6 106712772 106712910 -82566644 - MIR SINE MIR 0 262 116 2255 66 0 3 chr6 106713425 106713763 -82565791 + AluY SINE Alu 1 337 0 211 386 68 8 chr6 106714668 106714904 -82564650 - L2 LINE L2 -215 3057 2808 418 312 32 0 chr6 106714910 106715035 -82564519 + MER94 DNA DNA 6 134 0 227 191 0 0 chr6 106715343 106715385 -82564169 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2982 98 9 0 chr6 106715602 106716032 -82563522 + L1PA13 LINE L1 5730 6163 0 258 122 82 0 chr6 106716225 106716274 -82563280 + L1MC4 LINE L1 6651 6703 -1339 204 200 40 0 chr6 106717246 106717296 -82562258 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 27 62 0 0 chr6 106717443 106717491 -82562063 + AT_rich Low_complexity Low_complexity 1 48 0 244 370 116 0 chr6 106717686 106717824 -82561730 + MIR3 SINE MIR 54 207 -1 280 229 0 14 chr6 106719243 106719313 -82560241 - MER45 DNA AcHobo 0 1581 1513 21923 90 18 3 chr6 106719647 106723570 -82555984 + L1PA7 LINE L1 2176 6152 -2 862 304 41 22 chr6 106724577 106725040 -82554514 + HAL1b LINE L1 150 621 -727 280 218 18 18 chr6 106725824 106725934 -82553620 + L1MC4a LINE L1 5177 5286 -860 2744 215 23 23 chr6 106725947 106726090 -82553464 + L1MA7 LINE L1 5636 5778 -513 2500 38 3 19 chr6 106726090 106726406 -82553148 + AluY SINE Alu 1 311 0 2744 215 23 23 chr6 106726406 106726918 -82552636 + L1MA7 LINE L1 5777 6291 0 750 241 79 8 chr6 106726930 106727183 -82552371 + L1MC4a LINE L1 5285 5555 -2253 954 253 111 87 chr6 106727183 106727641 -82551913 - MLT1D LTR MaLR -36 469 1 1743 215 36 95 chr6 106727644 106728328 -82551226 + L1MC4a LINE L1 5622 6265 -1543 769 242 67 0 chr6 106728321 106728515 -82551039 - L1MC4 LINE L1 -1195 6847 6641 * 571 312 60 14 chr6 106728878 106729093 -82550461 + MIR SINE MIR 33 257 -5 332 322 126 9 chr6 106730670 106730863 -82548691 + MIR SINE MIR 6 216 -46 1400 166 88 25 chr6 106731452 106731735 -82547819 - AluJo SINE Alu 0 312 12 1743 188 9 14 chr6 106731762 106732107 -82547447 + MER2 DNA MER2_type 1 343 -1 570 270 44 25 chr6 106732960 106733119 -82546435 - MLT1F1 LTR MaLR -286 281 120 723 239 61 49 chr6 106733127 106733390 -82546164 + L2 LINE L2 3024 3289 -24 267 347 51 11 chr6 106734431 106734607 -82544947 + L2 LINE L2 3117 3299 -14 36 53 0 0 chr6 106734838 106734895 -82544659 + AT_rich Low_complexity Low_complexity 1 57 0 29 28 0 0 chr6 106735823 106735859 -82543695 + AT_rich Low_complexity Low_complexity 1 36 0 216 266 46 64 chr6 106735900 106736009 -82543545 - MIR SINE MIR -34 228 122 366 292 84 48 chr6 106737738 106738062 -82541492 - L3 LINE CR1 -1 1576 1199 467 235 6 34 chr6 106738415 106738546 -82541008 + MLT1E LTR MaLR 55 186 -381 730 219 38 6 chr6 106738581 106738741 -82540813 + MLT1E LTR MaLR 429 593 0 29 70 0 0 chr6 106739412 106739469 -82540085 + AT_rich Low_complexity Low_complexity 1 57 0 489 282 58 37 chr6 106740407 106740648 -82538906 + L1ME3A LINE L1 4507 4752 -1394 * 1226 178 82 15 chr6 106740638 106740793 -82538761 - L1MA10 LINE L1 -5 6329 6147 198 71 0 0 chr6 106740793 106740821 -82538733 + (TG)n Simple_repeat Simple_repeat 1 28 0 1226 178 82 15 chr6 106740821 106740934 -82538620 - L1MA10 LINE L1 -187 6147 6043 438 304 39 19 chr6 106740933 106741140 -82538414 + L1ME3A LINE L1 4750 4960 -1186 * 240 318 56 18 chr6 106741143 106741429 -82538125 + L1ME3A LINE L1 4996 5292 -854 794 280 64 14 chr6 106741471 106741817 -82537737 + L1ME3A LINE L1 5386 5748 -422 577 277 46 75 chr6 106741819 106742017 -82537537 + L1ME3A LINE L1 5851 6038 -132 855 289 113 38 chr6 106742017 106742519 -82537035 - MLT1F LTR MaLR -2 540 1 577 277 46 75 chr6 106742519 106742627 -82536927 + L1ME3A LINE L1 6038 6148 -22 1337 222 0 32 chr6 106742672 106742983 -82536571 - AluJo SINE Alu -11 301 1 324 195 52 39 chr6 106744038 106744115 -82535439 + LTR50 LTR ERVL 2 79 -716 249 232 12 37 chr6 106744198 106744280 -82535274 + LTR50 LTR ERVL 210 289 -506 276 261 188 0 chr6 106744401 106744539 -82535015 + LTR50 LTR ERVL 632 795 0 575 274 0 50 chr6 106747510 106747689 -82531865 - MLT1I LTR MaLR 0 409 240 1134 102 77 41 chr6 106747693 106747889 -82531665 + MER84 LTR ERVI 71 273 -234 270 0 0 0 chr6 106748059 106748089 -82531465 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 592 261 12 0 chr6 106750693 106750854 -82528700 + FRAM SINE Alu 1 163 -13 35 41 0 0 chr6 106751217 106751266 -82528288 + AT_rich Low_complexity Low_complexity 1 49 0 864 152 0 0 chr6 106751657 106751789 -82527765 + FLAM_A SINE Alu 1 132 -1 445 56 0 0 chr6 106753053 106753107 -82526447 + AluY SINE Alu 61 114 -197 657 177 0 57 chr6 106754263 106754404 -82525150 + FLAM_A SINE Alu 1 133 0 520 154 77 10 chr6 106754608 106754712 -82524842 + THE1C LTR MaLR 3 113 -262 851 114 6 89 chr6 106754812 106754846 -82524708 + MER84 LTR ERVI 363 398 -109 5940 99 14 24 chr6 106754846 106755531 -82524023 - L1PA12 LINE L1 -1 6167 5477 207 88 0 0 chr6 106755531 106755565 -82523989 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2158 82 0 0 chr6 106755565 106755846 -82523708 - AluY SINE Alu -30 281 1 5940 99 14 24 chr6 106755846 106756138 -82523416 - L1PA12 LINE L1 -689 5479 5197 851 114 6 89 chr6 106756138 106756261 -82523293 + MER84 LTR ERVI 398 507 0 292 333 129 0 chr6 106756617 106756764 -82522790 + MIR SINE MIR 1 166 -96 4312 154 78 53 chr6 106756805 106757919 -82521635 - L1MA7 LINE L1 0 6291 5154 627 185 0 60 chr6 106757922 106758073 -82521481 + L1MA7 LINE L1 5016 5157 -989 24 0 0 0 chr6 106759083 106759107 -82520447 + AT_rich Low_complexity Low_complexity 1 24 0 239 340 39 30 chr6 106759598 106759801 -82519753 + L1M4 LINE L1 2417 2621 -3525 260 147 27 27 chr6 106760075 106760161 -82519393 + (TATAA)n Simple_repeat Simple_repeat 1 86 0 30 45 0 0 chr6 106760330 106760374 -82519180 + AT_rich Low_complexity Low_complexity 1 44 0 2034 287 115 54 chr6 106760661 106761593 -82517961 + L2 LINE L2 894 1902 -1412 1635 185 3 20 chr6 106761593 106761885 -82517669 + AluJo SINE Alu 5 291 -21 2034 287 115 54 chr6 106761885 106762030 -82517524 + L2 LINE L2 1902 2037 -1277 1024 248 62 73 chr6 106762032 106762148 -82517406 + MLT1C LTR MaLR 6 122 -345 1706 149 61 25 chr6 106762148 106762510 -82517044 + THE1C LTR MaLR 1 375 0 1024 248 62 73 chr6 106762510 106762860 -82516694 + MLT1C LTR MaLR 122 467 0 395 297 31 0 chr6 106762864 106762992 -82516562 + L2 LINE L2 2036 2167 -1147 373 348 7 0 chr6 106763196 106763334 -82516220 - L2 LINE L2 -564 2750 2612 222 174 0 0 chr6 106763349 106763395 -82516159 + (CA)n Simple_repeat Simple_repeat 2 47 0 1894 154 34 9 chr6 106763696 106764046 -82515508 - L1M2 LINE L1 -547 5750 5392 879 158 6 0 chr6 106764046 106764203 -82515351 + L1MA5A LINE L1 6129 6287 -10 30 27 0 0 chr6 106764294 106764331 -82515223 + AT_rich Low_complexity Low_complexity 1 37 0 339 327 0 54 chr6 106764579 106764784 -82514770 - L1MC4a LINE L1 -1871 5937 5744 1941 205 0 8 chr6 106764997 106765363 -82514191 - MLT1A1 LTR MaLR -2 363 1 2428 77 0 10 chr6 106765427 106765739 -82513815 - AluSq SINE Alu -4 309 1 532 345 104 27 chr6 106766105 106766548 -82513006 - L1ME2 LINE L1 -304 5860 5384 313 207 0 24 chr6 106766556 106766638 -82512916 + MER116 DNA Mariner 1 80 0 492 226 260 0 chr6 106766877 106767023 -82512531 - MIR SINE MIR -15 247 64 25 31 0 0 chr6 106767211 106767243 -82512311 + AT_rich Low_complexity Low_complexity 1 32 0 228 320 31 31 chr6 106768126 106768254 -82511300 + HAL1b LINE L1 373 500 -848 270 0 0 0 chr6 106768417 106768447 -82511107 + (TG)n Simple_repeat Simple_repeat 2 31 0 477 211 57 32 chr6 106768476 106768600 -82510954 + L1MC4 LINE L1 6721 6846 -1115 2157 133 0 0 chr6 106768600 106768908 -82510646 + AluSx SINE Alu 1 308 -4 24 53 0 0 chr6 106769431 106769469 -82510085 + AT_rich Low_complexity Low_complexity 1 38 0 23 92 0 0 chr6 106769585 106769650 -82509904 + AT_rich Low_complexity Low_complexity 1 65 0 209 95 63 32 chr6 106770524 106770587 -82508967 + GA-rich Low_complexity Low_complexity 4 68 0 495 0 0 0 chr6 106770980 106771035 -82508519 + (CA)n Simple_repeat Simple_repeat 2 56 0 250 233 121 17 chr6 106772067 106772183 -82507371 - L1ME4a LINE L1 -92 6029 5902 29 60 0 0 chr6 106772616 106772666 -82506888 + AT_rich Low_complexity Low_complexity 1 50 0 254 274 128 0 chr6 106772822 106772924 -82506630 + MIR SINE MIR 83 197 -65 1993 194 19 12 chr6 106773015 106773443 -82506111 + MER95 LTR ERV 1 431 0 226 182 0 36 chr6 106773566 106773621 -82505933 + CT-rich Low_complexity Low_complexity 4 56 0 321 331 41 8 chr6 106774234 106774355 -82505199 + MIR3 SINE MIR 1 125 -83 * 384 293 29 29 chr6 106774339 106774479 -82505075 + MIR SINE MIR 73 212 -50 375 269 41 58 chr6 106774741 106774928 -82504626 - MIR SINE MIR -62 146 7 21 36 0 0 chr6 106777819 106777847 -82501707 + AT_rich Low_complexity Low_complexity 1 28 0 261 267 67 59 chr6 106778130 106778265 -82501289 - MIR SINE MIR -57 205 70 2523 67 0 15 chr6 106780466 106780807 -82498747 - L1PA8 LINE L1 0 6172 5837 3616 114 45 2 chr6 106780807 106781366 -82498188 + L1P LINE L1 4423 5005 -1141 230 229 24 72 chr6 106781587 106781670 -82497884 + MER103 DNA DNA 7 85 -81 5075 103 11 3 chr6 106781697 106782443 -82497111 - L1PA8 LINE L1 -5 6167 5416 2299 107 17 6 chr6 106782443 106782784 -82496770 - L1PA13 LINE L1 0 6163 5815 27 62 0 0 chr6 106783467 106783515 -82496039 + AT_rich Low_complexity Low_complexity 1 48 0 42 36 0 0 chr6 106784941 106784997 -82494557 + AT_rich Low_complexity Low_complexity 1 56 0 267 292 117 13 chr6 106785161 106785315 -82494239 - HAL1 LINE L1 -746 1761 1592 5011 178 7 6 chr6 106785532 106786473 -82493081 + L1PA10 LINE L1 1494 2435 -3711 10093 147 10 3 chr6 106786473 106788945 -82490609 + L1PA10 LINE L1 3681 6157 -11 25 75 0 0 chr6 106789782 106789835 -82489719 + AT_rich Low_complexity Low_complexity 1 53 0 467 295 158 53 chr6 106791197 106791519 -82488035 - L2 LINE L2 -7 3306 2951 8177 51 5 1 chr6 106792070 106793889 -82485665 - L1PA5 LINE L1 -2 6152 4328 13205 39 1 0 chr6 106793889 106795512 -82484042 + L1PA5 LINE L1 2721 4344 -1802 310 264 25 80 chr6 106795974 106796137 -82483417 - L2 LINE L2 0 3313 3160 202 211 88 18 chr6 106798660 106798717 -82480837 - MIR SINE MIR -76 186 126 365 176 190 56 chr6 106799049 106799191 -82480363 + MLT1H LTR MaLR 378 538 -11 765 259 111 71 chr6 106800127 106800651 -82478903 + MLT1H LTR MaLR 1 545 -4 24 91 0 0 chr6 106800920 106800986 -82478568 + AT_rich Low_complexity Low_complexity 1 66 0 711 112 0 0 chr6 106803356 106803463 -82476091 + (TA)n Simple_repeat Simple_repeat 1 107 0 754 257 56 16 chr6 106803636 106803885 -82475669 + MIR SINE MIR 2 260 -2 202 374 66 36 chr6 106804593 106804759 -82474795 - MIR3 SINE MIR -14 194 24 261 135 0 0 chr6 106805229 106805281 -82474273 + (TA)n Simple_repeat Simple_repeat 2 53 0 268 217 22 11 chr6 106805308 106805400 -82474154 + (TA)n Simple_repeat Simple_repeat 1 93 0 190 138 35 0 chr6 106805419 106805477 -82474077 + (TA)n Simple_repeat Simple_repeat 1 60 0 255 175 32 0 chr6 106805527 106805590 -82473964 + (TG)n Simple_repeat Simple_repeat 2 66 0 2513 82 3 3 chr6 106805902 106806244 -82473310 - L1PA13 LINE L1 -4 6159 5818 2389 134 8 5 chr6 106807712 106808086 -82471468 + THE1C LTR MaLR 1 375 0 271 221 132 0 chr6 106808102 106808170 -82471384 + Tigger4(Zombi) DNA MER2_type 1 77 -2654 * 861 203 80 28 chr6 106808167 106808418 -82471136 + Tigger4(Zombi) DNA MER2_type 2468 2731 0 229 307 153 75 chr6 106808564 106809020 -82470534 + MLT1K LTR MaLR 97 588 0 535 231 20 61 chr6 106809254 106809462 -82470092 + MLT1F1 LTR MaLR 10 209 -358 843 210 78 9 chr6 106809491 106809710 -82469844 + MLT1F1 LTR MaLR 334 567 0 209 139 23 23 chr6 106810884 106810927 -82468627 + GA-rich Low_complexity Low_complexity 2 44 0 432 211 246 14 chr6 106811249 106811391 -82468163 - MER5A DNA MER1_type -3 186 12 933 189 5 43 chr6 106811570 106811675 -82467879 + MER45A DNA AcHobo 1 98 -1483 5383 54 10 1 chr6 106811675 106812377 -82467177 - L1PA7 LINE L1 -2 6152 5445 933 189 5 43 chr6 106812377 106812456 -82467098 + MER45A DNA AcHobo 98 178 0 2470 52 0 7 chr6 106812496 106812805 -82466749 + AluY SINE Alu 1 307 -4 770 223 12 30 chr6 106815693 106816020 -82463534 + L1MB8 LINE L1 5880 6167 -11 324 0 0 0 chr6 106817090 106817126 -82462428 + (CAA)n Simple_repeat Simple_repeat 1 36 0 190 276 172 0 chr6 106817822 106817880 -82461674 + L2 LINE L2 3179 3246 -67 211 347 14 14 chr6 106818200 106818272 -82461282 + L2 LINE L2 3201 3272 0 22 35 0 0 chr6 106819955 106819984 -82459570 + AT_rich Low_complexity Low_complexity 1 29 0 345 328 18 29 chr6 106822917 106823088 -82456466 + MIR SINE MIR 38 206 -56 25 0 0 0 chr6 106823331 106823356 -82456198 + AT_rich Low_complexity Low_complexity 1 25 0 1282 187 24 114 chr6 106823440 106823895 -82455659 + MLT2D LTR ERVL 1 414 0 570 356 107 28 chr6 106824068 106824722 -82454832 - L2 LINE L2 -474 2840 2135 4208 149 22 14 chr6 106825280 106825650 -82453904 - L1PB3 LINE L1 0 6154 5789 185 0 40 0 chr6 106825650 106825675 -82453879 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 321 68 0 0 chr6 106825674 106825718 -82453836 + (CA)n Simple_repeat Simple_repeat 2 45 0 4208 149 22 14 chr6 106825675 106826072 -82453482 - L1PB3 LINE L1 -365 5789 5424 375 316 0 0 chr6 106826230 106826328 -82453226 + MER58 DNA MER1_type 1 98 -117 223 216 20 0 chr6 106826347 106826398 -82453156 + GA-rich Low_complexity Low_complexity 1 52 0 239 170 21 0 chr6 106827211 106827258 -82452296 + (CA)n Simple_repeat Simple_repeat 1 48 0 903 127 0 0 chr6 106828441 106828575 -82450979 - AluSg/x SINE Alu -2 307 174 24 0 0 0 chr6 106829443 106829467 -82450087 + AT_rich Low_complexity Low_complexity 1 24 0 2145 108 7 0 chr6 106829717 106830023 -82449531 + AluSg SINE Alu 1 308 -2 449 349 23 6 chr6 106830299 106830474 -82449080 - MIR SINE MIR -7 255 78 938 256 18 75 chr6 106830927 106831314 -82448240 + MLT1A1 LTR MaLR 1 365 0 21 36 0 0 chr6 106833262 106833290 -82446264 + AT_rich Low_complexity Low_complexity 1 28 0 7423 138 5 0 chr6 106883761 106884858 -82394696 + HERVL LTR ERVL 1459 2560 -3094 906 314 83 21 chr6 106885100 106885472 -82394082 + L2 LINE L2 2912 3306 -7 306 286 0 0 chr6 106885535 106885612 -82393942 - L1MC4 LINE L1 -1351 6691 6615 199 282 26 13 chr6 106886932 106887010 -82392544 - MIR SINE MIR -2 260 182 28 29 0 0 chr6 106887488 106887523 -82392031 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 106887872 106887893 -82391661 + AT_rich Low_complexity Low_complexity 1 21 0 448 123 0 0 chr6 106888012 106888077 -82391477 - L1P LINE L1 -2387 3759 3695 * 2689 80 10 0 chr6 106888076 106888462 -82391092 + L1P LINE L1 4986 5375 -771 384 274 0 0 chr6 106889226 106889321 -82390233 + MIR SINE MIR 68 162 -100 924 73 0 8 chr6 106889321 106889445 -82390109 - L1PA7 LINE L1 -432 5722 5600 2934 78 2 17 chr6 106889445 106889857 -82389697 + L1PA7 LINE L1 5734 6140 -14 2581 36 0 7 chr6 106889857 106890161 -82389393 - AluY SINE Alu -9 302 1 210 171 0 0 chr6 106890312 106890353 -82389201 + (CAT)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr6 106890447 106890469 -82389085 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 106890567 106890599 -82388955 + AT_rich Low_complexity Low_complexity 1 32 0 525 167 31 10 chr6 106890761 106890857 -82388697 - LTR48 LTR ERV1 -674 113 16 573 209 11 2 chr6 106890976 106891152 -82388402 - LTR48-int LTR ERV1 -162 6169 5958 401 165 0 13 chr6 106891292 106891371 -82388183 + THE1C-int LTR MaLR 1503 1580 0 2487 123 8 24 chr6 106891371 106891752 -82387802 + THE1C LTR MaLR 1 375 0 319 372 85 24 chr6 106891863 106892027 -82387527 + L2 LINE L2 3098 3271 -1 185 348 43 0 chr6 106892295 106892387 -82387167 + MIR SINE MIR 81 176 -86 1505 204 0 4 chr6 106892656 106892936 -82386618 - AluJb SINE Alu -33 279 1 202 254 18 0 chr6 106895424 106895479 -82384075 + GA-rich Low_complexity Low_complexity 2 57 0 1510 248 26 36 chr6 106896434 106896825 -82382729 - MSTB1 LTR MaLR 0 432 46 4995 157 32 15 chr6 106896875 106898104 -82381450 - L1PA15 LINE L1 -3 6162 4924 302 140 20 0 chr6 106898105 106898155 -82381399 - MSTB1 LTR MaLR -378 54 4 627 319 58 19 chr6 106898338 106898545 -82381009 + LTR33 LTR ERVL 12 226 -295 315 354 83 29 chr6 106898542 106898782 -82380772 - LTR33 LTR ERVL -168 353 101 * 247 268 14 0 chr6 106898870 106898941 -82380613 + LTR33 LTR ERVL 450 521 0 225 65 0 0 chr6 106899315 106899346 -82380208 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 927 305 41 9 chr6 106899771 106900112 -82379442 + ERVL LTR ERVL 1622 1973 -3791 1025 308 71 70 chr6 106900146 106900939 -82378615 + ERVL LTR ERVL 1995 2827 -2866 2071 190 29 79 chr6 106901076 106901659 -82377895 + MLT2B3 LTR ERVL 1 554 0 6475 168 6 5 chr6 106901659 106902781 -82376773 + HERVL-B3 LTR ERVL 1 1123 -4531 1640 194 33 57 chr6 106902933 106903356 -82376198 - MER31-int LTR ERV1 -401 4535 4123 2208 232 99 27 chr6 106903356 106903538 -82376016 - MER50 LTR ERV1 0 734 567 1774 120 4 15 chr6 106903538 106903805 -82375749 + AluSq SINE Alu 36 299 -14 2208 232 99 27 chr6 106903805 106904298 -82375256 - MER50 LTR ERV1 -167 567 10 4677 213 85 114 chr6 106904301 106905261 -82374293 - MER31-int LTR ERV1 -898 5433 4446 13364 164 55 15 chr6 106905261 106907874 -82371680 + Tigger2 DNA MER2_type 2 2718 0 4677 213 85 114 chr6 106907874 106909690 -82369864 - MER31-int LTR ERV1 -1885 4446 2740 284 236 0 0 chr6 106909781 106909836 -82369718 - MER31A LTR ERV1 -397 88 34 189 0 0 0 chr6 106909880 106909901 -82369653 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1077 305 27 15 chr6 106909954 106910282 -82369272 - MER31-int LTR ERV1 -4091 2240 1909 502 211 211 49 chr6 106910318 106910634 -82368920 - MER31-int LTR ERV1 -4329 1908 445 253 231 62 0 chr6 106910944 106911009 -82368545 + L1MC4 LINE L1 6956 7024 -1018 4043 77 2 5 chr6 106911041 106912357 -82367197 + L1P LINE L1 1 1439 -4707 26 30 0 0 chr6 106912530 106912563 -82366991 + AT_rich Low_complexity Low_complexity 1 33 0 441 291 156 11 chr6 106912564 106912743 -82366811 - MIR SINE MIR -1 261 57 24 32 0 0 chr6 106912799 106912830 -82366724 + AT_rich Low_complexity Low_complexity 1 31 0 1289 220 137 26 chr6 106913732 106913901 -82365653 - MSTD LTR MaLR -7 389 240 186 43 0 0 chr6 106913901 106913924 -82365630 + (GA)n Simple_repeat Simple_repeat 2 24 0 1289 220 137 26 chr6 106913924 106914104 -82365450 - MSTD LTR MaLR -156 240 1 324 0 0 0 chr6 106914158 106914194 -82365360 + (TG)n Simple_repeat Simple_repeat 2 37 0 640 261 121 76 chr6 106914523 106915003 -82364551 + MLT1G3 LTR MaLR 21 562 -5 1409 261 28 15 chr6 106915036 106915427 -82364127 + MSTD LTR MaLR 1 396 0 465 305 111 48 chr6 106916865 106917364 -82362190 + MLT1F LTR MaLR 58 542 0 247 263 53 0 chr6 106917443 106917519 -82362035 + MER110 LTR ERV1 101 180 -311 843 262 83 51 chr6 106917610 106917923 -82361631 + MER110 LTR ERV1 167 489 -2 1025 303 51 14 chr6 106918391 106918820 -82360734 + L1MCc LINE L1 40 484 -5939 2046 304 61 55 chr6 106919037 106919805 -82359749 + L1MCc LINE L1 787 1548 -5393 180 111 0 0 chr6 106919805 106919832 -82359722 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2046 304 61 55 chr6 106919832 106920689 -82358865 + L1MCc LINE L1 1548 2434 -4507 2237 139 69 10 chr6 106921220 106921624 -82357930 + MSTA LTR MaLR 1 428 0 255 192 0 0 chr6 106922523 106922596 -82356958 + CT-rich Low_complexity Low_complexity 2 74 0 429 20 0 0 chr6 106922596 106922646 -82356908 + (CA)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chr6 106922694 106922716 -82356838 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 106924391 106924414 -82355140 + AT_rich Low_complexity Low_complexity 1 23 0 1866 153 15 32 chr6 106924581 106924922 -82354632 + MER44D DNA MER2_type 4 608 -1 216 160 0 40 chr6 106925427 106925477 -82354077 + A-rich Low_complexity Low_complexity 2 49 0 22 0 0 0 chr6 106926517 106926539 -82353015 + AT_rich Low_complexity Low_complexity 1 22 0 211 193 0 35 chr6 106927351 106927408 -82352146 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 23 54 0 0 chr6 106927574 106927611 -82351943 + AT_rich Low_complexity Low_complexity 1 37 0 263 354 105 19 chr6 106930451 106930660 -82348894 + L2 LINE L2 2804 3030 -242 29 0 0 0 chr6 106930747 106930776 -82348778 + AT_rich Low_complexity Low_complexity 1 29 0 2253 91 7 13 chr6 106932089 106932397 -82347157 - AluSg SINE Alu -4 306 1 38 68 0 0 chr6 106932987 106933060 -82346494 + AT_rich Low_complexity Low_complexity 1 73 0 214 119 24 24 chr6 106934935 106934977 -82344577 + GA-rich Low_complexity Low_complexity 1 42 0 193 77 0 0 chr6 106936286 106936312 -82343242 + MIR SINE MIR 116 141 -121 392 125 0 47 chr6 106936651 106936715 -82342839 + MLT1D LTR MaLR 4 64 -441 1235 162 57 0 chr6 106936715 106936925 -82342629 - MER47B DNA MER2_type 0 418 197 925 210 6 0 chr6 106937032 106937199 -82342355 - MER47B DNA MER2_type -243 175 8 1626 210 79 30 chr6 106937206 106937634 -82341920 + MLT1D LTR MaLR 57 505 0 2222 97 3 10 chr6 106937938 106938249 -82341305 + AluSc SINE Alu 1 309 0 1677 210 12 3 chr6 106938409 106938737 -82340817 + MLT1C LTR MaLR 135 465 -2 5260 72 9 0 chr6 106939244 106939939 -82339615 + L1PA7 LINE L1 5454 6154 0 181 244 85 61 chr6 106939952 106940034 -82339520 - L2 LINE L2 -1891 1423 1340 36 0 0 0 chr6 106941103 106941139 -82338415 + AT_rich Low_complexity Low_complexity 1 36 0 999 289 171 40 chr6 106941634 106942349 -82337205 + L2 LINE L2 2500 3308 -5 820 168 0 0 chr6 106942373 106942504 -82337050 - FLAM_C SINE Alu -2 131 1 2146 189 36 2 chr6 106943271 106943683 -82335871 + MSTB LTR MaLR 1 426 0 263 267 91 48 chr6 106944350 106944537 -82335017 - LTR33 LTR ERVL -20 501 307 610 321 16 11 chr6 106944591 106944778 -82334776 - LTR33 LTR ERVL -311 210 23 1209 208 35 109 chr6 106946347 106946742 -82332812 - MLT1A2 LTR MaLR 0 374 9 228 299 82 37 chr6 106947045 106947179 -82332375 + L1ME LINE L1 5412 5551 -570 622 282 13 6 chr6 106947222 106947378 -82332176 + MLT1E1 LTR MaLR 4 160 -433 4395 255 104 43 chr6 106947385 106948889 -82330665 + Tigger6b DNA MER2_type 1 1597 0 893 262 89 33 chr6 106948889 106949230 -82330324 + MLT1E1 LTR MaLR 165 630 -24 396 292 15 15 chr6 106949993 106950123 -82329431 + MER5A DNA MER1_type 38 167 -22 331 168 35 29 chr6 106950209 106950382 -82329172 + (TA)n Simple_repeat Simple_repeat 2 175 0 261 0 0 0 chr6 106950413 106950442 -82329112 + (CA)n Simple_repeat Simple_repeat 2 30 0 1671 242 138 13 chr6 106950659 106951440 -82328114 - L1MC4 LINE L1 -27 8015 7137 31 0 0 0 chr6 106951490 106951521 -82328033 + AT_rich Low_complexity Low_complexity 1 31 0 31936 29 5 0 chr6 106951534 106956189 -82323365 - L1PA2 LINE L1 0 6155 1485 11171 138 16 12 chr6 106956289 106958005 -82321549 + HERVL-B3 LTR ERVL 3931 5654 0 2021 208 31 78 chr6 106958005 106958586 -82320968 + MLT2B3 LTR ERVL 1 554 0 577 327 32 0 chr6 106958598 106958818 -82320736 + HERVL LTR ERVL 3048 3274 -2380 347 299 84 19 chr6 106958962 106959116 -82320438 + LTR33 LTR ERVL 5 168 -353 382 311 77 10 chr6 106959203 106959399 -82320155 + LTR33 LTR ERVL 280 488 -33 285 242 10 20 chr6 106959466 106959565 -82319989 + MLT1J LTR MaLR 414 511 0 245 326 35 58 chr6 106960250 106960422 -82319132 + L2 LINE L2 3122 3289 -24 268 356 74 15 chr6 106960627 106960762 -82318792 + MIR SINE MIR 8 150 -112 215 300 0 0 chr6 106960818 106960878 -82318676 + A-rich Low_complexity Low_complexity 2 61 0 286 345 124 0 chr6 106961130 106961275 -82318279 + MLT1I LTR MaLR 44 206 -203 1530 168 113 20 chr6 106962828 106963173 -82316381 - L1MB1 LINE L1 -262 5927 5551 1197 226 9 49 chr6 106963182 106963532 -82316022 + L1MA10 LINE L1 5996 6331 -3 27 62 0 0 chr6 106963675 106963723 -82315831 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr6 106963791 106963815 -82315739 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 106963972 106963997 -82315557 + AT_rich Low_complexity Low_complexity 1 25 0 4876 171 14 0 chr6 106965013 106965793 -82313761 + ERVL LTR ERVL 4490 5280 -484 43 20 0 0 chr6 106967166 106967216 -82312338 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr6 106968688 106968709 -82310845 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 106968984 106969006 -82310548 + AT_rich Low_complexity Low_complexity 1 22 0 307 306 52 37 chr6 106970452 106970586 -82308968 - L2 LINE L2 -184 3088 2953 2258 103 0 10 chr6 106970855 106971165 -82308389 - AluSc SINE Alu -2 307 1 622 12 37 0 chr6 106971165 106971247 -82308307 + (TTTTC)n Simple_repeat Simple_repeat 2 86 0 2009 100 7 11 chr6 106971247 106971527 -82308027 - AluSc SINE Alu -30 279 1 711 294 166 35 chr6 106971613 106972076 -82307478 - MLT1H1 LTR MaLR 0 555 32 827 182 6 68 chr6 106972267 106972443 -82307111 - AluJ SINE Alu -17 295 131 303 140 0 0 chr6 106972446 106972496 -82307058 + (T)n Simple_repeat Simple_repeat 1 50 0 839 181 0 0 chr6 106972498 106972631 -82306923 - AluJ SINE Alu -169 133 1 231 61 0 0 chr6 106972838 106972871 -82306683 + (TC)n Simple_repeat Simple_repeat 2 34 0 326 280 98 8 chr6 106972903 106973035 -82306519 + MIR SINE MIR 53 196 -66 2819 191 60 67 chr6 106973918 106974767 -82304787 - L1MA9 LINE L1 -7 6305 5463 13083 178 53 22 chr6 106974767 106977258 -82302296 + L1MA2 LINE L1 16 2582 -4983 3068 109 2 30 chr6 106977499 106977993 -82301561 + L1MA2 LINE L1 2584 3063 -4502 618 143 0 0 chr6 106977995 106978100 -82301454 + L1MA2 LINE L1 2951 3055 -4510 * 9572 164 22 12 chr6 106978097 106980981 -82298573 + L1MA2 LINE L1 4745 7698 -25 1607 254 77 12 chr6 106981307 106981788 -82297766 - LTR40a LTR ERVL 0 519 8 1221 216 31 4 chr6 106981817 106982072 -82297482 - HERVL40 LTR ERVL -22 5508 5247 269 308 21 77 chr6 106983119 106983262 -82296292 - HERVL40 LTR ERVL -874 4656 4522 * 3947 276 33 44 chr6 106983260 106985365 -82294189 - HERVL40 LTR ERVL -1222 4308 2104 3291 263 68 91 chr6 106985384 106986937 -82292617 - HERVL40 LTR ERVL -3994 1536 19 777 268 41 61 chr6 106986984 106987279 -82292275 - LTR40b LTR ERVL -42 420 132 826 217 0 0 chr6 106987343 106987495 -82292059 - LTR40a LTR ERVL -367 152 1 234 196 0 18 chr6 106987532 106987588 -82291966 + CT-rich Low_complexity Low_complexity 2 56 0 312 70 0 0 chr6 106987591 106987634 -82291920 + (CA)n Simple_repeat Simple_repeat 2 44 0 390 314 6 57 chr6 106989483 106989642 -82289912 - MIR SINE MIR -103 159 9 253 264 77 44 chr6 106990408 106990499 -82289055 - L2 LINE L2 -42 3230 3137 267 330 48 107 chr6 106990573 106991115 -82288439 - L2 LINE L2 -456 2858 2349 215 362 0 0 chr6 106991183 106991252 -82288302 - L2 LINE L2 -993 2321 2253 310 237 195 8 chr6 106992260 106992378 -82287176 + HAL1b LINE L1 250 389 -959 393 280 28 9 chr6 106992385 106992492 -82287062 - L2 LINE L2 -6 3307 3199 275 291 33 66 chr6 106992495 106992677 -82286877 + HAL1b LINE L1 393 568 -780 242 263 64 19 chr6 106992862 106993018 -82286536 + HAL1b LINE L1 646 808 -540 335 297 72 37 chr6 106993112 106993402 -82286152 + L1M4 LINE L1 3458 3758 -2388 1118 241 60 65 chr6 106994083 106994481 -82285073 - MER110 LTR ERV1 -33 458 63 215 318 252 12 chr6 106994513 106994834 -82284720 + L2 LINE L2 1701 2098 -1216 628 184 14 0 chr6 106995503 106995650 -82283904 + CT-rich Low_complexity Low_complexity 4 152 0 305 228 0 10 chr6 106995672 106995773 -82283781 + CT-rich Low_complexity Low_complexity 2 101 0 1325 114 43 0 chr6 106995990 106996201 -82283353 - L1PA16 LINE L1 -592 5574 5355 3038 150 71 16 chr6 106996201 106996744 -82282810 + L1PA16 LINE L1 5575 6165 -1 1998 138 79 15 chr6 106997262 106997603 -82281951 + THE1B LTR MaLR 2 364 0 11282 114 2 5 chr6 106997603 106999187 -82280367 + THE1B-int LTR MaLR 1 1580 0 1912 133 81 26 chr6 106999187 106999532 -82280022 + THE1B LTR MaLR 1 364 0 298 336 53 6 chr6 106999664 106999824 -82279730 + MER20B DNA MER1_type 32 201 -18 2034 132 0 7 chr6 106999829 107000124 -82279430 + AluSx SINE Alu 1 293 -19 23 68 0 0 chr6 107000220 107000264 -82279290 + AT_rich Low_complexity Low_complexity 1 44 0 8280 219 29 29 chr6 107000624 107001411 -82278143 - L1MA9 LINE L1 -38 7295 6509 1805 130 4 0 chr6 107001411 107001699 -82277855 - AluSc SINE Alu 0 309 44 8280 219 29 29 chr6 107001699 107002179 -82277375 - L1MA9 LINE L1 -824 6509 6030 2322 86 0 0 chr6 107002179 107002471 -82277083 - AluY SINE Alu -19 292 1 8280 219 29 29 chr6 107002471 107003002 -82276552 - L1MA9 LINE L1 -1303 6030 5500 2776 78 0 26 chr6 107003002 107003387 -82276167 + THE1C LTR MaLR 1 375 0 8280 219 29 29 chr6 107003387 107004810 -82274744 - L1MA9 LINE L1 -1833 5500 4064 8621 234 54 34 chr6 107004826 107007601 -82271953 - L1MA9 LINE L1 -4323 2845 13 348 321 135 17 chr6 107007634 107007930 -82271624 - L1M4 LINE L1 -1873 4273 3943 333 346 43 22 chr6 107008185 107008370 -82271184 - MIR SINE MIR -5 257 69 227 233 139 23 chr6 107008763 107008849 -82270705 + LTR67 LTR ERVL 458 553 -4 317 364 79 0 chr6 107009923 107010063 -82269491 + ERVL LTR ERVL 4074 4224 -1540 429 278 67 22 chr6 107010530 107010710 -82268844 + ERVL LTR ERVL 4883 5070 -694 356 128 0 3 chr6 107011196 107011430 -82268124 + AluSg SINE Alu 1 300 0 1489 270 165 25 chr6 107012135 107012827 -82266727 + LTR50 LTR ERVL 7 795 0 412 307 28 22 chr6 107013069 107013248 -82266306 - LTR33 LTR ERVL -3 518 339 607 264 156 26 chr6 107013283 107013514 -82266040 - LTR33 LTR ERVL -247 274 14 1225 233 45 28 chr6 107015783 107016140 -82263414 - MLT1A2 LTR MaLR -11 363 1 217 264 44 22 chr6 107016324 107016415 -82263139 + MIR SINE MIR 112 204 -58 348 24 0 0 chr6 107016492 107016533 -82263021 + (TA)n Simple_repeat Simple_repeat 1 41 0 2105 124 0 3 chr6 107017154 107017460 -82262094 + AluSx SINE Alu 1 305 -7 1873 162 16 3 chr6 107017471 107017599 -82261955 + AluSx SINE Alu 1 126 -186 192 40 0 0 chr6 107017599 107017624 -82261930 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 1873 162 16 3 chr6 107017624 107017803 -82261751 + AluSx SINE Alu 126 312 0 1387 234 87 80 chr6 107019523 107020086 -82259468 + MLT1F1 LTR MaLR 1 567 0 395 281 101 65 chr6 107020264 107020570 -82258984 - L2 LINE L2 -126 3187 2871 400 243 50 50 chr6 107020634 107020774 -82258780 - LTR16A1 LTR ERVL -317 140 1 207 0 0 0 chr6 107021099 107021122 -82258432 + (T)n Simple_repeat Simple_repeat 1 23 0 1328 212 78 18 chr6 107021531 107021917 -82257637 + Charlie1 DNA MER1_type 2353 2761 0 3006 165 21 30 chr6 107022088 107022711 -82256843 - Tigger3(Golem) DNA MER2_type -6 3023 2407 23 78 0 0 chr6 107022759 107022810 -82256744 + AT_rich Low_complexity Low_complexity 1 51 0 23 86 0 0 chr6 107023515 107023573 -82255981 + AT_rich Low_complexity Low_complexity 1 58 0 229 305 0 0 chr6 107023942 107024001 -82255553 - MIR SINE MIR -128 134 76 2126 127 0 13 chr6 107024061 107024369 -82255185 + AluSg SINE Alu 1 304 -6 212 304 101 0 chr6 107024450 107024529 -82255025 + MIR SINE MIR 103 189 -73 2157 228 55 40 chr6 107024782 107025294 -82254260 - MLT1E1 LTR MaLR 0 654 131 2334 58 0 3 chr6 107025294 107025586 -82253968 + AluY SINE Alu 1 291 -20 2157 228 55 40 chr6 107025586 107025651 -82253903 - MLT1E1 LTR MaLR -523 131 68 466 218 69 149 chr6 107025800 107026075 -82253479 + MER112 DNA MER1_type 2 254 -6 22 0 0 0 chr6 107027051 107027073 -82252481 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 107028353 107028377 -82251177 + AT_rich Low_complexity Low_complexity 1 24 0 707 108 0 0 chr6 107029177 107029288 -82250266 - L1PA13 LINE L1 -2 6161 6051 619 105 0 0 chr6 107029288 107029374 -82250180 + L1PA13 LINE L1 5856 5941 -222 189 0 0 0 chr6 107029610 107029631 -82249923 + (T)n Simple_repeat Simple_repeat 1 21 0 23 101 0 0 chr6 107029977 107030056 -82249498 + AT_rich Low_complexity Low_complexity 1 79 0 33 66 0 0 chr6 107031437 107031498 -82248056 + AT_rich Low_complexity Low_complexity 1 61 0 1668 155 38 76 chr6 107031992 107032385 -82247169 + L1MA8 LINE L1 5667 6044 -247 5842 101 21 14 chr6 107032385 107034001 -82245553 + L1PA13 LINE L1 4532 6163 0 589 195 57 16 chr6 107034087 107034210 -82245344 + FRAM SINE Alu 38 165 -11 388 297 85 29 chr6 107034431 107034677 -82244877 + L1MC4 LINE L1 7161 7420 -622 534 104 1 0 chr6 107035002 107035098 -82244456 - L1M LINE L1 -809 5357 5273 4048 151 51 17 chr6 107035098 107035849 -82243705 + L1PA16 LINE L1 5377 6152 -14 884 284 132 38 chr6 107035900 107036911 -82242643 - L1M4 LINE L1 -1101 5045 3940 26 74 0 0 chr6 107037002 107037056 -82242498 + AT_rich Low_complexity Low_complexity 1 54 0 523 272 141 45 chr6 107037110 107037422 -82242132 - L1M4 LINE L1 -2478 3668 3327 233 209 0 0 chr6 107037441 107037484 -82242070 - MLT1H LTR MaLR -18 537 495 261 0 0 0 chr6 107037514 107037543 -82242011 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 249 271 23 30 chr6 107037555 107037688 -82241866 - L1M4 LINE L1 -1859 4287 4156 1273 249 41 72 chr6 107037739 107038181 -82241373 - MLT1H LTR MaLR -121 428 1 391 286 56 73 chr6 107038181 107038493 -82241061 - L1M4 LINE L1 -2802 3344 3034 249 255 64 85 chr6 107041214 107041355 -82238199 + MIR SINE MIR 110 247 -15 321 82 0 0 chr6 107042775 107042824 -82236730 + (TG)n Simple_repeat Simple_repeat 2 50 0 21 36 0 0 chr6 107043667 107043695 -82235859 + AT_rich Low_complexity Low_complexity 1 28 0 226 279 29 0 chr6 107044262 107044330 -82235224 - L3 LINE CR1 -19 1558 1489 238 293 9 38 chr6 107044340 107044446 -82235108 - MLT1K LTR MaLR -18 570 468 2491 54 0 16 chr6 107044492 107044838 -82234716 - AluY SINE Alu 0 341 1 1045 235 87 16 chr6 107045259 107045699 -82233855 + MLT1D LTR MaLR 1 505 0 230 322 0 110 chr6 107046188 107046306 -82233248 - L3 LINE CR1 -462 1115 1011 2251 114 0 0 chr6 107046675 107046981 -82232573 - AluSg SINE Alu -4 306 1 432 291 72 57 chr6 107047090 107047579 -82231975 - L1M3 LINE L1 -390 5793 5280 1644 184 45 0 chr6 107047895 107048226 -82231328 + MER7A DNA MER2_type 2 345 -1 577 306 114 22 chr6 107048337 107049106 -82230448 - L1M3 LINE L1 -1465 4681 3842 242 196 20 20 chr6 107049269 107049320 -82230234 - MER81 DNA DNA -29 85 35 1147 180 24 28 chr6 107051571 107051821 -82227733 + MER44D DNA MER2_type 1 519 -90 734 251 51 9 chr6 107051824 107052038 -82227516 + MER8 DNA MER2_type 1 344 -1 463 244 0 0 chr6 107052038 107052123 -82227431 + MER44D DNA MER2_type 620 704 -1 362 335 61 25 chr6 107052549 107053163 -82226391 - L1M3 LINE L1 -3401 2745 2113 479 152 30 20 chr6 107053214 107053313 -82226241 - L1MC2 LINE L1 -1 6343 6244 2498 244 65 29 chr6 107053313 107054188 -82225366 - L1M4 LINE L1 -929 5217 4309 408 292 90 75 chr6 107054189 107054832 -82224722 - L1MEd LINE L1 -5040 1079 427 307 284 56 37 chr6 107055042 107055204 -82224350 - L1MEd LINE L1 -5948 171 7 198 315 14 27 chr6 107055751 107055824 -82223730 + L2 LINE L2 3242 3313 0 216 0 0 0 chr6 107056408 107056432 -82223122 + (T)n Simple_repeat Simple_repeat 1 24 0 244 256 26 13 chr6 107056923 107057001 -82222553 - MER116 DNA Mariner 0 80 2 376 311 79 67 chr6 107057002 107057407 -82222147 - MLT1L LTR MaLR 0 615 206 1325 191 30 88 chr6 107058997 107059256 -82220298 - MER58B DNA MER1_type -2079 341 106 2547 4 0 0 chr6 107059256 107059572 -82219982 + AluY SINE Alu 1 316 0 1325 191 30 88 chr6 107059572 107059673 -82219881 - MER58B DNA MER1_type -2314 106 1 439 121 73 12 chr6 107059757 107059922 -82219632 + (TA)n Simple_repeat Simple_repeat 2 176 0 263 129 43 29 chr6 107059928 107059998 -82219556 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 516 121 28 39 chr6 107060004 107060186 -82219368 + (TA)n Simple_repeat Simple_repeat 1 180 0 188 35 35 0 chr6 107060197 107060226 -82219328 + (TA)n Simple_repeat Simple_repeat 1 30 0 278 277 48 12 chr6 107060226 107060309 -82219245 - MIR SINE MIR -137 125 40 1417 24 0 0 chr6 107060833 107061002 -82218552 - L1PA2 LINE L1 0 6155 5987 525 190 15 58 chr6 107061351 107061488 -82218066 - MLT1E2 LTR MaLR -445 181 51 289 293 8 68 chr6 107061680 107061813 -82217741 + MIR SINE MIR 82 206 -56 21 0 0 0 chr6 107061931 107061952 -82217602 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr6 107064089 107064112 -82215442 + (T)n Simple_repeat Simple_repeat 1 23 0 2374 47 33 0 chr6 107064586 107064887 -82214667 + AluY SINE Alu 1 311 0 650 295 70 13 chr6 107065096 107065323 -82214231 - MIR SINE MIR -17 245 6 309 291 9 82 chr6 107065435 107065545 -82214009 + L2 LINE L2 3210 3311 -2 24 32 0 0 chr6 107065626 107065657 -82213897 + AT_rich Low_complexity Low_complexity 1 31 0 304 337 10 10 chr6 107066660 107066758 -82212796 - MIR SINE MIR -121 141 44 421 352 56 10 chr6 107067557 107067753 -82211801 - MIR SINE MIR -21 241 37 1986 115 14 3 chr6 107068980 107069267 -82210287 - AluSp SINE Alu -22 291 2 183 204 0 0 chr6 107069372 107069421 -82210133 + (TA)n Simple_repeat Simple_repeat 1 49 0 25 65 0 0 chr6 107070578 107070624 -82208930 + AT_rich Low_complexity Low_complexity 1 46 0 231 36 0 0 chr6 107070688 107070716 -82208838 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 183 42 0 0 chr6 107070919 107070943 -82208611 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 209 305 49 24 chr6 107071211 107071293 -82208261 - L2 LINE L2 -27 3286 3203 21 82 0 0 chr6 107071495 107071544 -82208010 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr6 107071683 107071715 -82207839 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 107073163 107073185 -82206369 + AT_rich Low_complexity Low_complexity 1 22 0 273 235 44 15 chr6 107073362 107073430 -82206124 + L2 LINE L2 3203 3272 0 260 280 50 33 chr6 107073768 107073950 -82205604 + L1MC/D LINE L1 5610 5794 -2014 31 0 0 0 chr6 107074029 107074060 -82205494 + AT_rich Low_complexity Low_complexity 1 31 0 496 65 26 0 chr6 107074160 107074237 -82205317 + (TCTA)n Simple_repeat Simple_repeat 1 79 0 315 259 148 30 chr6 107074501 107074636 -82204918 + MIR SINE MIR 109 259 -3 187 353 0 15 chr6 107074706 107074774 -82204780 + L2 LINE L2 3196 3262 -10 216 0 0 0 chr6 107075452 107075476 -82204078 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 207 0 0 0 chr6 107075583 107075606 -82203948 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 294 158 13 26 chr6 107076391 107076467 -82203087 + CT-rich Low_complexity Low_complexity 3 77 0 228 67 0 0 chr6 107076536 107076566 -82202988 + (TG)n Simple_repeat Simple_repeat 1 30 0 31 88 0 0 chr6 107078922 107079002 -82200552 + AT_rich Low_complexity Low_complexity 1 80 0 1788 122 7 4 chr6 107079207 107079477 -82200077 - AluSc SINE Alu 0 309 39 186 133 0 0 chr6 107079482 107079512 -82200042 + (TC)n Simple_repeat Simple_repeat 1 30 0 2433 79 3 0 chr6 107079840 107080145 -82199409 + AluSp SINE Alu 1 306 -7 324 0 0 0 chr6 107080145 107080181 -82199373 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr6 107081090 107081111 -82198443 + AT_rich Low_complexity Low_complexity 1 21 0 388 330 102 25 chr6 107081734 107081970 -82197584 - MIR SINE MIR 0 262 9 247 320 104 24 chr6 107082634 107082759 -82196795 + MIR SINE MIR 5 139 -123 1979 151 3 0 chr6 107082797 107083102 -82196452 - AluSq SINE Alu -7 306 1 297 298 149 57 chr6 107083156 107083559 -82195995 - L2 LINE L2 -14 3299 2860 21 57 0 0 chr6 107083673 107083708 -82195846 + AT_rich Low_complexity Low_complexity 1 35 0 650 319 0 0 chr6 107083724 107083912 -82195642 - MIR SINE MIR -10 252 65 23 0 0 0 chr6 107084849 107084872 -82194682 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr6 107085752 107085787 -82193767 + AT_rich Low_complexity Low_complexity 1 35 0 2010 149 116 18 chr6 107086167 107086555 -82192999 - MSTA LTR MaLR -2 426 1 200 121 30 0 chr6 107086663 107086696 -82192858 + T-rich Low_complexity Low_complexity 3 36 0 264 246 31 0 chr6 107086770 107086835 -82192719 - MIR SINE MIR -111 151 85 24 0 0 0 chr6 107087014 107087038 -82192516 + AT_rich Low_complexity Low_complexity 1 24 0 4121 170 74 11 chr6 107087125 107088189 -82191365 + L1MA7 LINE L1 4965 6291 0 378 0 0 0 chr6 107088822 107088864 -82190690 + (TA)n Simple_repeat Simple_repeat 2 43 0 627 81 0 0 chr6 107089092 107089178 -82190376 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 327 213 0 0 chr6 107089184 107089264 -82190290 + (TA)n Simple_repeat Simple_repeat 1 80 0 1269 234 37 58 chr6 107089728 107090109 -82189445 - MLT1B LTR MaLR -7 383 11 528 226 0 0 chr6 107090126 107090228 -82189326 - MLT1B-int LTR MaLR 0 1735 1634 2509 40 0 0 chr6 107090560 107090859 -82188695 - AluY SINE Alu -11 300 2 857 325 66 13 chr6 107090939 107091585 -82187969 - L1M4 LINE L1 -4541 2597 1770 207 0 0 0 chr6 107091587 107091610 -82187944 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 300 239 67 30 chr6 107091751 107091885 -82187669 - L1M4 LINE L1 -5324 1535 1397 1091 244 98 58 chr6 107091959 107092438 -82187116 - L1MC4 LINE L1 -149 7893 7396 872 222 119 11 chr6 107092437 107092698 -82186856 - L1MC4 LINE L1 -980 7062 6774 * 266 267 0 17 chr6 107092740 107092800 -82186754 + (TG)n Simple_repeat Simple_repeat 2 60 0 400 188 0 0 chr6 107092801 107092870 -82186684 + Tigger2 DNA MER2_type 1 69 -2649 * 690 214 57 13 chr6 107092854 107093013 -82186541 + Tigger2 DNA MER2_type 2267 2432 -286 7264 45 0 2 chr6 107093278 107094552 -82185002 - L1PA5 LINE L1 0 6154 4884 1621 166 18 0 chr6 107094558 107094841 -82184713 + Tigger2 DNA MER2_type 2429 2716 -2 488 302 52 16 chr6 107094843 107095091 -82184463 - L1MC4 LINE L1 -1336 6706 6450 1019 220 36 118 chr6 107095255 107095669 -82183885 + MLT1B LTR MaLR 11 390 0 260 320 30 10 chr6 107096360 107096460 -82183094 - L1ME LINE L1 -5448 622 521 300 309 34 99 chr6 107096639 107096872 -82182682 - L1ME LINE L1 -5549 521 304 252 318 12 0 chr6 107096993 107097078 -82182476 - L1ME LINE L1 -5888 182 97 230 177 0 32 chr6 107097775 107097837 -82181717 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 29 70 0 0 chr6 107097939 107097996 -82181558 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr6 107098040 107098061 -82181493 + AT_rich Low_complexity Low_complexity 1 21 0 13251 148 29 25 chr6 107099015 107101423 -82178131 + Tigger1 DNA MER2_type 3 2418 0 26 74 0 0 chr6 107101516 107101570 -82177984 + AT_rich Low_complexity Low_complexity 1 54 0 559 299 21 0 chr6 107102144 107102385 -82177169 + L1ME1 LINE L1 892 1137 -5259 886 283 68 49 chr6 107102448 107102556 -82176998 + L1ME1 LINE L1 1263 1368 -5028 351 0 0 0 chr6 107102556 107102595 -82176959 + (CA)n Simple_repeat Simple_repeat 2 40 0 886 283 68 49 chr6 107102595 107103076 -82176478 + L1ME1 LINE L1 1368 1863 -4533 1612 208 0 10 chr6 107103077 107103389 -82176165 + AluJo SINE Alu 1 309 -3 383 290 14 7 chr6 107103396 107103534 -82176020 + L1ME1 LINE L1 5259 5397 -818 21 0 0 0 chr6 107103537 107103558 -82175996 + AT_rich Low_complexity Low_complexity 1 21 0 2127 243 42 29 chr6 107103560 107103710 -82175844 + L1ME1 LINE L1 5360 5507 -728 1536 172 17 3 chr6 107103710 107104001 -82175553 + L1PB4 LINE L1 5857 6151 -5 2127 243 42 29 chr6 107104001 107104671 -82174883 + L1ME1 LINE L1 5507 6179 -56 27 49 0 0 chr6 107106275 107106316 -82173238 + AT_rich Low_complexity Low_complexity 1 41 0 206 357 57 0 chr6 107106391 107106461 -82173093 - L2 LINE L2 -36 3277 3204 376 324 29 0 chr6 107106534 107106673 -82172881 + MIR SINE MIR 72 214 -48 243 0 0 0 chr6 107107328 107107355 -82172199 + (TA)n Simple_repeat Simple_repeat 2 28 0 216 0 0 0 chr6 107107722 107107746 -82171808 + (T)n Simple_repeat Simple_repeat 1 24 0 477 267 146 56 chr6 107109024 107109477 -82170077 - MLT1F LTR MaLR -3 539 49 26 50 0 0 chr6 107109613 107109653 -82169901 + AT_rich Low_complexity Low_complexity 1 40 0 769 360 88 13 chr6 107110890 107111345 -82168209 + L2 LINE L2 2456 2944 -370 4138 241 66 88 chr6 107111366 107113096 -82166458 - L1M4 LINE L1 -1150 5494 3727 1545 192 22 41 chr6 107113096 107113232 -82166322 + MLT1A1 LTR MaLR 5 142 -223 2780 10 0 0 chr6 107113232 107113535 -82166019 - AluYa5 SINE Alu -8 303 1 1545 192 22 41 chr6 107113535 107113763 -82165791 + MLT1A1 LTR MaLR 142 362 -3 4138 241 66 88 chr6 107113763 107114501 -82165053 - L1M4 LINE L1 -2917 3727 3087 1820 216 108 4 chr6 107114501 107114954 -82164600 + MLT1D LTR MaLR 3 502 -3 4138 241 66 88 chr6 107114954 107115152 -82164402 - L1M4 LINE L1 -3557 3087 2886 296 180 67 11 chr6 107115160 107115249 -82164305 - L1M4 LINE L1 -4087 2738 2645 544 298 84 33 chr6 107115251 107116130 -82163424 - L1M4 LINE L1 -4235 2590 1513 212 310 0 0 chr6 107116707 107116765 -82162789 + CT-rich Low_complexity Low_complexity 3 60 0 2755 155 35 4 chr6 107116777 107117267 -82162287 + L1PA16 LINE L1 5541 6045 -121 3536 179 35 7 chr6 107117529 107118215 -82161339 - L1P LINE L1 -1739 4407 3703 2752 93 0 8 chr6 107118372 107118769 -82160785 + HERVH LTR ERV1 3600 3993 -3720 4350 143 1 1 chr6 107118771 107119433 -82160121 + HERVH LTR ERV1 4488 5149 -2564 1387 134 19 0 chr6 107119434 107119650 -82159904 + HERVH LTR ERV1 5600 5819 -1894 * 1908 79 6 23 chr6 107119648 107119974 -82159580 + HERVH LTR ERV1 7322 7713 0 3513 55 0 7 chr6 107119974 107120425 -82159129 + LTR7 LTR ERV1 1 448 -2 16482 91 28 17 chr6 107120427 107123287 -82156267 + HERVH LTR ERV1 1 2957 -4756 1006 154 19 6 chr6 107123421 107123646 -82155908 - MLT2A2 LTR ERVL -211 233 1 1247 151 0 5 chr6 107126139 107126331 -82153223 - AluSq SINE Alu -122 191 1 765 250 81 125 chr6 107126332 107126764 -82152790 + MLT2B2 LTR ERVL 103 515 0 286 202 96 0 chr6 107126962 107127056 -82152498 + L1MC4 LINE L1 6606 6708 -1334 3058 191 37 15 chr6 107127432 107128112 -82151442 - L1MB2 LINE L1 -2 6169 5475 1709 203 5 63 chr6 107128149 107128414 -82151140 + MLT1B LTR MaLR 1 235 -155 2054 144 29 29 chr6 107128414 107128789 -82150765 + THE1C LTR MaLR 1 375 0 1709 203 5 63 chr6 107128789 107128937 -82150617 + MLT1B LTR MaLR 235 390 0 1063 165 14 27 chr6 107128937 107129227 -82150327 - L1MB2 LINE L1 -700 5471 5188 2939 115 2 2 chr6 107129522 107129973 -82149581 - L1PA13 LINE L1 -4 6159 5709 42794 36 24 1 chr6 107130073 107135430 -82144124 - L1P1 LINE L1 -674 5481 1 253 333 117 40 chr6 107135623 107135872 -82143682 + L1ME LINE L1 5494 5761 -360 1584 187 3 21 chr6 107137697 107137799 -82141755 + L1PA16 LINE L1 5828 5930 -236 2045 184 52 0 chr6 107137799 107138206 -82141348 + MSTA LTR MaLR 1 428 0 1584 187 3 21 chr6 107138206 107138435 -82141119 + L1PA16 LINE L1 5930 6153 -13 2453 64 0 32 chr6 107139291 107139602 -82139952 - AluSg SINE Alu -9 301 1 4218 212 73 26 chr6 107139603 107141615 -82137939 - L1PBa LINE L1 -3105 3757 1647 2251 126 6 9 chr6 107141616 107141949 -82137605 + THE1C LTR MaLR 1 332 -43 314 95 0 0 chr6 107142061 107142103 -82137451 + THE1C LTR MaLR 316 357 -7 201 74 0 0 chr6 107142124 107142151 -82137403 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 371 0 0 0 chr6 107142159 107142201 -82137353 - L1PB2 LINE L1 -54 6097 6056 989 171 57 5 chr6 107142201 107142412 -82137142 - L1PBa LINE L1 -5239 1624 1403 510 285 6 6 chr6 107142447 107142605 -82136949 - L1PBa LINE L1 -6704 159 2 524 307 12 12 chr6 107142765 107142928 -82136626 + LTR16A LTR ERVL 113 275 -175 662 302 105 12 chr6 107143184 107143432 -82136122 + LTR16A LTR ERVL 18 288 -162 250 247 37 0 chr6 107143631 107143712 -82135842 + (TA)n Simple_repeat Simple_repeat 2 85 0 272 303 126 0 chr6 107144423 107144542 -82135012 + L2 LINE L2 3179 3312 -1 942 261 39 69 chr6 107145157 107145521 -82134033 - MLT1H1 LTR MaLR -33 522 170 224 362 61 58 chr6 107145585 107145911 -82133643 + L2 LINE L2 2946 3272 0 359 219 21 21 chr6 107147395 107147491 -82132063 - MLT2B1 LTR ERVL -414 106 11 669 339 50 56 chr6 107147852 107148496 -82131058 + ERVL LTR ERVL 4687 5326 -438 824 297 28 37 chr6 107148643 107148899 -82130655 + LTR16A LTR ERVL 31 285 -165 2734 10 0 0 chr6 107148899 107149197 -82130357 - AluYa5 SINE Alu -13 298 1 824 297 28 37 chr6 107149197 107149267 -82130287 + LTR16A LTR ERVL 285 354 -96 21 36 0 0 chr6 107149376 107149404 -82130150 + AT_rich Low_complexity Low_complexity 1 28 0 250 278 78 56 chr6 107149822 107150002 -82129552 - L1ME3A LINE L1 -22 6148 5965 1325 261 34 30 chr6 107150196 107150671 -82128883 - L1ME3A LINE L1 -372 5798 5322 1026 254 52 15 chr6 107150719 107150991 -82128563 - AluJo SINE Alu -30 282 1 343 255 113 35 chr6 107150992 107151133 -82128421 - L1ME3A LINE L1 -840 5306 5155 22 35 0 0 chr6 107152519 107152548 -82127006 + AT_rich Low_complexity Low_complexity 1 29 0 7318 43 1 0 chr6 107153056 107154540 -82125014 - L1PA5 LINE L1 0 6154 4674 3166 34 0 0 chr6 107154540 107154921 -82124633 + L1PA5 LINE L1 4278 4658 -1488 881 208 40 5 chr6 107155718 107155920 -82123634 + MER3 DNA MER1_type 1 209 0 21 0 0 0 chr6 107156316 107156337 -82123217 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 107156458 107156486 -82123068 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr6 107156618 107156644 -82122910 + AT_rich Low_complexity Low_complexity 1 26 0 1677 113 4 0 chr6 107157320 107157549 -82122005 - AluSx SINE Alu -82 230 1 325 314 44 29 chr6 107159313 107159450 -82120104 + MIR SINE MIR 74 212 -50 410 286 73 97 chr6 107159870 107160129 -82119425 + MLT1J LTR MaLR 177 429 -82 205 352 14 0 chr6 107160227 107160298 -82119256 + L2 LINE L2 3201 3272 0 357 147 46 138 chr6 107160485 107160534 -82119020 + HSMAR2 DNA Mariner 1167 1202 -100 1707 170 32 35 chr6 107160534 107160846 -82118708 + AluJo SINE Alu 2 312 0 357 147 46 138 chr6 107160846 107160905 -82118649 + HSMAR2 DNA Mariner 1202 1265 -37 737 194 38 5 chr6 107161442 107161628 -82117926 - L1MC3 LINE L1 -6 7779 7588 242 275 120 35 chr6 107161695 107161837 -82117717 + MIR3 SINE MIR 46 199 -9 356 121 30 76 chr6 107161949 107162015 -82117539 + AluJ/FRAM SINE Alu 229 291 -11 283 178 0 0 chr6 107162072 107162117 -82117437 - L2 LINE L2 -6 3307 3263 24 32 0 0 chr6 107163250 107163281 -82116273 + AT_rich Low_complexity Low_complexity 1 31 0 1513 218 0 0 chr6 107164900 107165194 -82114360 + AluJo SINE Alu 1 294 -18 305 293 15 0 chr6 107165635 107165768 -82113786 + HAL1 LINE L1 2245 2379 -128 324 278 41 0 chr6 107165867 107165964 -82113590 + L2 LINE L2 2221 2321 -993 235 258 206 41 chr6 107165959 107166056 -82113498 + L2 LINE L2 3180 3292 -21 * 23 0 0 0 chr6 107166263 107166286 -82113268 + AT_rich Low_complexity Low_complexity 1 23 0 390 310 60 27 chr6 107166758 107166942 -82112612 + MLT1K LTR MaLR 369 558 -30 235 363 48 20 chr6 107167310 107167456 -82112098 + L2 LINE L2 3029 3178 -94 279 283 31 158 chr6 107168597 107169053 -82110501 + LTR67 LTR ERVL 19 416 -141 601 255 66 14 chr6 107169408 107169620 -82109934 + MIR SINE MIR 7 229 -33 261 350 14 49 chr6 107169693 107169836 -82109718 + MER5A DNA MER1_type 52 189 0 237 359 21 21 chr6 107169995 107170137 -82109417 + MIR3 SINE MIR 35 176 -32 251 267 47 0 chr6 107170168 107170254 -82109300 + (CATA)n Simple_repeat Simple_repeat 2 91 0 463 254 28 14 chr6 107170259 107170401 -82109153 + MIR SINE MIR 71 214 -48 282 116 0 0 chr6 107170433 107170476 -82109078 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 188 321 188 18 chr6 107170501 107170613 -82108941 + MIR3 SINE MIR 14 144 -64 2061 122 0 31 chr6 107171129 107171449 -82108105 - AluSq SINE Alu -2 311 2 1369 229 157 0 chr6 107172537 107172887 -82106667 + MLT1D LTR MaLR 1 405 -100 435 184 31 12 chr6 107173205 107173320 -82106234 + MLT1D LTR MaLR 407 503 -2 261 0 0 0 chr6 107173339 107173368 -82106186 + (T)n Simple_repeat Simple_repeat 1 29 0 48 85 0 0 chr6 107174071 107174189 -82105365 + AT_rich Low_complexity Low_complexity 1 118 0 2100 206 103 38 chr6 107174932 107175469 -82104085 + LTR48B LTR ERV1 5 587 -57 2730 201 45 68 chr6 107175469 107176176 -82103378 - LTR8 LTR ERV1 0 691 1 2100 206 103 38 chr6 107176176 107176239 -82103315 + LTR48B LTR ERV1 587 644 0 24 0 0 0 chr6 107176442 107176466 -82103088 + AT_rich Low_complexity Low_complexity 1 24 0 1461 198 148 18 chr6 107177104 107177443 -82102111 + Tigger7 DNA MER2_type 25 407 -2080 680 183 25 0 chr6 107177446 107177566 -82101988 + Tigger7 DNA MER2_type 2369 2491 0 364 307 89 35 chr6 107178267 107178469 -82101085 - L3b LINE CR1 -263 1320 1108 396 269 47 71 chr6 107179576 107179788 -82099766 + L2 LINE L2 2012 2218 -1096 520 301 93 93 chr6 107179799 107180281 -82099273 + L2 LINE L2 2816 3297 -16 326 343 62 20 chr6 107180327 107180473 -82099081 + MIR SINE MIR 10 161 -101 892 279 57 11 chr6 107180475 107180755 -82098799 - MLT1C LTR MaLR 0 467 175 400 317 41 0 chr6 107180777 107180900 -82098654 + L2 LINE L2 3184 3311 -2 428 252 120 44 chr6 107181678 107181928 -82097626 + L1ME LINE L1 4783 5051 -1095 22 0 0 0 chr6 107182130 107182152 -82097402 + AT_rich Low_complexity Low_complexity 1 22 0 578 314 40 43 chr6 107182273 107182624 -82096930 - L2 LINE L2 -266 3047 2691 359 342 41 37 chr6 107182626 107182921 -82096633 + L1ME LINE L1 5281 5576 -588 203 250 0 0 chr6 107183385 107183429 -82096125 + (TATG)n Simple_repeat Simple_repeat 4 47 0 319 175 87 0 chr6 107183732 107183835 -82095719 - L1MA7 LINE L1 -1 6290 6179 672 287 49 12 chr6 107184031 107184275 -82095279 + MIR SINE MIR 10 262 0 26 74 0 0 chr6 107184280 107184334 -82095220 + AT_rich Low_complexity Low_complexity 1 54 0 375 286 54 44 chr6 107184511 107184714 -82094840 - L1M4 LINE L1 -3732 2414 2210 1844 136 0 11 chr6 107184748 107185075 -82094479 - AluSx SINE Alu 0 324 1 237 286 103 8 chr6 107185575 107185701 -82093853 - HAL1 LINE L1 -950 1557 1420 1195 248 12 65 chr6 107185701 107186113 -82093441 + MLT1B LTR MaLR 1 390 0 2181 169 3 3 chr6 107186645 107187013 -82092541 - THE1C LTR MaLR -3 372 5 347 145 0 14 chr6 107187017 107187086 -82092468 - THE1C-int LTR MaLR 0 1580 1513 * 5401 227 36 12 chr6 107187084 107188289 -82091265 - THE1C-int LTR MaLR -414 1237 3 2298 141 16 3 chr6 107188291 107188661 -82090893 - THE1C LTR MaLR 0 375 1 1108 129 11 11 chr6 107189292 107189478 -82090076 - HSMAR2 DNA Mariner 0 1302 1117 1215 142 17 59 chr6 107189582 107189821 -82089733 + THE1B LTR MaLR 134 362 -2 * 2611 166 14 11 chr6 107189821 107190265 -82089289 - HSMAR2 DNA Mariner -233 1069 625 2832 98 11 25 chr6 107190266 107190419 -82089135 - L1PA8A LINE L1 -461 5670 5516 2377 87 0 0 chr6 107190419 107190730 -82088824 + AluY SINE Alu 1 311 0 2832 98 11 25 chr6 107190730 107191179 -82088375 - L1PA8A LINE L1 -615 5516 5077 3074 129 21 0 chr6 107191179 107191657 -82087897 + L1PA10 LINE L1 5667 6156 -12 3593 140 58 2 chr6 107191660 107192267 -82087287 - HSMAR2 DNA Mariner -661 641 1 1961 182 148 40 chr6 107192485 107193040 -82086514 - LTR29 LTR ERV1 -3 619 5 279 345 74 60 chr6 107193233 107193613 -82085941 + LTR16C LTR ERVL 90 474 -17 249 344 94 61 chr6 107194494 107194855 -82084699 + L2 LINE L2 823 1195 -2119 23 33 0 0 chr6 107195046 107195076 -82084478 + AT_rich Low_complexity Low_complexity 1 30 0 247 292 83 17 chr6 107196283 107196403 -82083151 - MIR SINE MIR -30 232 105 231 103 0 0 chr6 107196711 107196750 -82082804 + (A)n Simple_repeat Simple_repeat 1 39 0 341 244 80 36 chr6 107197156 107197372 -82082182 + L1ME4a LINE L1 5473 5732 -389 1774 239 53 13 chr6 107197374 107197826 -82081728 + MLT2B2 LTR ERVL 2 471 -44 371 300 136 30 chr6 107198084 107198514 -82081040 + MLT1G1 LTR MaLR 1 537 -58 1910 254 57 12 chr6 107198526 107199084 -82080470 + MER119 DNA MER1_type 1 583 0 314 289 54 59 chr6 107199123 107199327 -82080227 + L1ME4a LINE L1 5834 6036 -85 382 278 52 0 chr6 107199377 107199492 -82080062 + MIR SINE MIR 74 194 -68 270 81 0 0 chr6 107200070 107200107 -82079447 + (TG)n Simple_repeat Simple_repeat 2 38 0 34 55 0 0 chr6 107200350 107200405 -82079149 + AT_rich Low_complexity Low_complexity 1 55 0 3497 95 52 6 chr6 107200464 107200979 -82078575 + L1PA10 LINE L1 5627 6165 -3 1186 40 7 0 chr6 107203044 107203192 -82076362 + L1PA5 LINE L1 6000 6148 -6 201 39 0 0 chr6 107203210 107203236 -82076318 + (TA)n Simple_repeat Simple_repeat 1 26 0 1006 231 66 36 chr6 107204369 107204732 -82074822 - MLT1A2 LTR MaLR 0 374 1 198 0 0 0 chr6 107205688 107205710 -82073844 + (A)n Simple_repeat Simple_repeat 1 22 0 2827 16 0 0 chr6 107205807 107206125 -82073429 + AluYb8 SINE Alu 1 318 0 279 0 0 0 chr6 107206196 107206227 -82073327 + (CA)n Simple_repeat Simple_repeat 1 31 0 1881 168 24 115 chr6 107206969 107207364 -82072190 + MSTB LTR MaLR 1 348 -78 1899 139 14 3 chr6 107207364 107207658 -82071896 - AluSx SINE Alu -13 299 3 1881 168 24 115 chr6 107207658 107207731 -82071823 + MSTB LTR MaLR 348 426 0 22 35 0 0 chr6 107208133 107208162 -82071392 + AT_rich Low_complexity Low_complexity 1 29 0 261 57 0 0 chr6 107208269 107208304 -82071250 + (TG)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr6 107208589 107208618 -82070936 + AT_rich Low_complexity Low_complexity 1 29 0 315 49 0 0 chr6 107208723 107208764 -82070790 + (TG)n Simple_repeat Simple_repeat 1 41 0 249 119 0 0 chr6 107209579 107209621 -82069933 + (CA)n Simple_repeat Simple_repeat 1 42 0 970 304 81 18 chr6 107210910 107211354 -82068200 + MLT1J LTR MaLR 25 496 -15 1664 199 42 0 chr6 107211573 107211904 -82067650 + L1MC3 LINE L1 7361 7705 -80 1471 288 34 13 chr6 107211905 107212380 -82067174 + MLT2F LTR ERVL 179 663 0 1059 308 99 13 chr6 107213860 107214324 -82065230 - MLT1G1 LTR MaLR -1 594 91 552 325 25 0 chr6 107214684 107214841 -82064713 - MIR SINE MIR -73 189 29 891 180 52 28 chr6 107215786 107215997 -82063557 - L1MB8 LINE L1 -2 6176 5961 2558 38 0 10 chr6 107216688 107217002 -82062552 + AluY SINE Alu 1 311 0 24 91 0 0 chr6 107217496 107217562 -82061992 + AT_rich Low_complexity Low_complexity 1 66 0 181 392 63 0 chr6 107218156 107218235 -82061319 + L2 LINE L2 3119 3202 -70 30 27 0 0 chr6 107219108 107219145 -82060409 + AT_rich Low_complexity Low_complexity 1 37 0 330 67 0 0 chr6 107219431 107219476 -82060078 + (TG)n Simple_repeat Simple_repeat 1 45 0 225 0 0 0 chr6 107219475 107219500 -82060054 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 199 358 42 8 chr6 107219948 107220068 -82059486 + L2 LINE L2 2933 3056 -216 315 0 0 0 chr6 107220496 107220531 -82059023 + (TG)n Simple_repeat Simple_repeat 2 36 0 354 349 20 7 chr6 107221312 107221464 -82058090 + MIR3 SINE MIR 50 203 -5 414 0 0 0 chr6 107222148 107222194 -82057360 + (TG)n Simple_repeat Simple_repeat 1 46 0 350 302 16 74 chr6 107225609 107225798 -82053756 + MER5B DNA MER1_type 1 178 0 1085 244 91 12 chr6 107226883 107227203 -82052351 - L1MC3 LINE L1 -265 7520 7176 283 191 15 15 chr6 107227206 107227274 -82052280 - MLT1F1 LTR MaLR -465 102 35 1236 161 19 35 chr6 107227328 107227588 -82051966 - L1MA9 LINE L1 -5 6307 6052 252 313 72 42 chr6 107227588 107227754 -82051800 + L2 LINE L2 2615 2785 -529 220 336 65 9 chr6 107227796 107227903 -82051651 - MER5B DNA MER1_type 0 178 66 21 36 0 0 chr6 107227986 107228014 -82051540 + AT_rich Low_complexity Low_complexity 1 28 0 5566 154 33 5 chr6 107228916 107228960 -82050594 + L1MA5 LINE L1 5258 5299 -1001 459 0 0 0 chr6 107228960 107229011 -82050543 + (CA)n Simple_repeat Simple_repeat 2 52 0 5566 154 33 5 chr6 107229011 107229959 -82049595 + L1MA5 LINE L1 5299 6278 -22 22 0 0 0 chr6 107229960 107229982 -82049572 + AT_rich Low_complexity Low_complexity 1 22 0 41 58 0 0 chr6 107230410 107230479 -82049075 + AT_rich Low_complexity Low_complexity 1 69 0 24 32 0 0 chr6 107230544 107230575 -82048979 + AT_rich Low_complexity Low_complexity 1 31 0 34 24 0 0 chr6 107232056 107232097 -82047457 + AT_rich Low_complexity Low_complexity 1 41 0 2200 82 26 3 chr6 107232194 107232497 -82047057 - AluY SINE Alu -1 310 1 1371 203 49 21 chr6 107232608 107232933 -82046621 + L1MC3 LINE L1 7135 7468 -317 195 129 0 0 chr6 107233278 107233309 -82046245 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 258 297 169 14 chr6 107235051 107235199 -82044355 + MLT1J LTR MaLR 335 505 -6 21 36 0 0 chr6 107235563 107235591 -82043963 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr6 107235603 107235643 -82043911 + AT_rich Low_complexity Low_complexity 1 40 0 26 82 0 0 chr6 107235718 107235779 -82043775 + AT_rich Low_complexity Low_complexity 1 61 0 440 234 23 105 chr6 107235899 107236070 -82043484 - MER63 DNA MER1_type -279 783 1 766 187 0 0 chr6 107237549 107237688 -82041866 + FLAM_C SINE Alu 1 139 -4 701 300 142 28 chr6 107239615 107239938 -82039616 + L2 LINE L2 2535 2894 -420 410 321 33 28 chr6 107240053 107240265 -82039289 + L2 LINE L2 3101 3313 0 26 0 0 0 chr6 107240591 107240617 -82038937 + AT_rich Low_complexity Low_complexity 1 26 0 25 83 0 0 chr6 107242977 107243037 -82036517 + AT_rich Low_complexity Low_complexity 1 60 0 748 169 0 29 chr6 107243037 107243173 -82036381 - FLAM_C SINE Alu -11 132 1 1752 234 16 6 chr6 107243881 107244244 -82035310 + MLT1A2 LTR MaLR 8 374 0 1216 234 23 0 chr6 107245678 107245934 -82033620 + MLT1A1 LTR MaLR 1 262 -103 562 263 29 0 chr6 107245948 107246119 -82033435 + L1M4 LINE L1 3353 3528 -2618 3324 224 24 32 chr6 107246124 107246910 -82032644 + L1 LINE L1 21 800 -6765 1290 168 22 0 chr6 107246911 107247179 -82032375 + L1 LINE L1 5650 5923 -1642 26 0 0 0 chr6 107248092 107248118 -82031436 + AT_rich Low_complexity Low_complexity 1 26 0 250 259 0 0 chr6 107249537 107249548 -82030006 + MER3 DNA MER1_type 37 47 -162 516 220 9 0 chr6 107249548 107249657 -82029897 - MER3 DNA MER1_type 0 209 100 751 194 174 58 chr6 107249678 107249936 -82029618 - L1MA5A LINE L1 -5 6292 6005 307 189 100 22 chr6 107249958 107250048 -82029506 - MER3 DNA MER1_type -108 101 5 765 167 7 7 chr6 107250144 107250282 -82029272 - L1MA5A LINE L1 -360 5952 5815 204 40 0 0 chr6 107250283 107250308 -82029246 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1329 148 61 75 chr6 107250347 107250706 -82028848 + L1MA9 LINE L1 5957 6310 -2 191 291 0 18 chr6 107251149 107251204 -82028350 + MIR SINE MIR 13 66 -196 282 342 81 34 chr6 107251627 107251861 -82027693 + L3 LINE CR1 324 568 -1009 325 320 180 60 chr6 107251991 107252208 -82027346 + L3 LINE CR1 610 800 -777 1317 197 19 0 chr6 107252208 107252467 -82027087 + L1PB4 LINE L1 5880 6143 -13 325 320 180 60 chr6 107252467 107252965 -82026589 + L3 LINE CR1 800 1411 -166 319 226 16 73 chr6 107254716 107254800 -82024754 - LTR41 LTR ERVL -6 767 691 1999 243 64 8 chr6 107254800 107255332 -82024222 + MER68 LTR ERV1 1 562 0 319 226 16 73 chr6 107255332 107255371 -82024183 - LTR41 LTR ERVL -82 691 651 469 262 65 39 chr6 107255878 107256084 -82023470 - LTR41 LTR ERVL -557 238 4 261 266 75 11 chr6 107258526 107258620 -82020934 + MER94 DNA DNA 1 100 -34 242 220 0 0 chr6 107259816 107259875 -82019679 + (TA)n Simple_repeat Simple_repeat 2 60 0 1201 230 150 0 chr6 107259875 107260225 -82019329 - MLT2B2 LTR ERVL -64 456 6 412 291 74 40 chr6 107262292 107262467 -82017087 + MIR SINE MIR 25 205 -57 184 271 56 47 chr6 107262463 107262570 -82016984 - MIR SINE MIR -1 261 154 * 222 283 17 17 chr6 107262628 107262688 -82016866 + L2 LINE L2 2230 2289 -1025 357 338 76 70 chr6 107262787 107263272 -82016282 + L2 LINE L2 2490 2977 -337 209 278 120 28 chr6 107263383 107263491 -82016063 + L2 LINE L2 3187 3304 -9 448 313 84 6 chr6 107263841 107264020 -82015534 - MIR SINE MIR -56 206 14 2071 165 29 8 chr6 107264389 107264771 -82014783 - MLT1B LTR MaLR 0 390 1 207 0 0 0 chr6 107265086 107265109 -82014445 + (T)n Simple_repeat Simple_repeat 1 23 0 413 306 78 67 chr6 107265162 107265548 -82014006 + MLT1L LTR MaLR 1 390 -225 1253 229 53 43 chr6 107265623 107265720 -82013834 + MLT1C LTR MaLR 67 162 -305 302 0 26 0 chr6 107265720 107265758 -82013796 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2055 111 0 0 chr6 107265758 107266037 -82013517 - AluY SINE Alu -32 279 1 1253 229 53 43 chr6 107266037 107266335 -82013219 + MLT1C LTR MaLR 161 467 0 225 289 186 26 chr6 107268236 107268392 -82011162 - L3 LINE CR1 -244 1333 1153 1652 254 39 26 chr6 107268821 107269468 -82010086 - L1M4 LINE L1 -1632 4514 3860 1748 254 46 4 chr6 107269520 107269997 -82009557 + MLT1D-int LTR MaLR 6 502 -869 1156 226 44 109 chr6 107269991 107270376 -82009178 + MLT1D-int LTR MaLR 978 1337 -34 * 475 182 11 11 chr6 107270406 107270494 -82009060 + MLT1D LTR MaLR 3 90 -415 389 306 21 0 chr6 107270496 107270640 -82008914 - L1M4 LINE L1 -2278 3868 3722 216 182 45 0 chr6 107271673 107271739 -82007815 + (TA)n Simple_repeat Simple_repeat 2 70 0 318 333 83 0 chr6 107271867 107271987 -82007567 - L2 LINE L2 -2 3270 3141 307 319 31 58 chr6 107272196 107272387 -82007167 - LTR16C LTR ERVL -3 488 303 208 294 244 29 chr6 107273665 107273981 -82005573 - L2 LINE L2 -1325 1989 1606 243 111 0 0 chr6 107274052 107274142 -82005412 + Alu SINE Alu 249 338 0 317 299 58 32 chr6 107276269 107276423 -82003131 + Charlie8 DNA MER1_type 1 158 -2259 275 342 34 26 chr6 107276533 107276650 -82002904 + MIR SINE MIR 51 168 -94 21 57 0 0 chr6 107277148 107277183 -82002371 + AT_rich Low_complexity Low_complexity 1 35 0 2190 120 0 3 chr6 107277749 107278057 -82001497 - AluSq SINE Alu -2 311 5 1935 241 74 34 chr6 107278178 107278733 -82000821 + L1M2b LINE L1 13 589 -6620 8712 223 35 13 chr6 107278902 107282718 -81996836 + L1M2b LINE L1 1726 5626 -1582 252 0 0 0 chr6 107283099 107283127 -81996427 + (T)n Simple_repeat Simple_repeat 1 28 0 243 0 0 0 chr6 107283865 107283892 -81995662 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 355 225 99 18 chr6 107284317 107284428 -81995126 - L2 LINE L2 0 3313 3194 23 0 0 0 chr6 107285140 107285163 -81994391 + AT_rich Low_complexity Low_complexity 1 23 0 392 322 39 30 chr6 107285257 107285487 -81994067 - L1M4 LINE L1 -1542 4604 4373 793 216 30 30 chr6 107285813 107286012 -81993542 - MER3 DNA MER1_type -4 205 7 403 212 162 0 chr6 107286077 107286176 -81993378 + MLT2B3 LTR ERVL 1 115 -400 1733 276 14 14 chr6 107286231 107286647 -81992907 + MLT2B3 LTR ERVL 101 516 -38 200 188 21 21 chr6 107286659 107286707 -81992847 + (TTA)n Simple_repeat Simple_repeat 2 49 0 314 119 45 30 chr6 107286716 107286783 -81992771 + MLT1E1 LTR MaLR 587 654 0 1118 273 92 21 chr6 107287489 107287922 -81991632 - MLT1C LTR MaLR 0 467 4 1222 106 5 40 chr6 107288075 107288274 -81991280 - L1PB1 LINE L1 -1 6150 5959 510 46 0 0 chr6 107288274 107288339 -81991215 - AluY SINE Alu -13 296 232 1130 108 12 0 chr6 107288341 107288507 -81991047 - L1PB1 LINE L1 -181 5970 5803 265 130 7 68 chr6 107288537 107288683 -81990871 + (TA)n Simple_repeat Simple_repeat 2 138 0 686 133 74 0 chr6 107288704 107288839 -81990715 - L1PB1 LINE L1 -350 5801 5657 6025 159 18 32 chr6 107289100 107289827 -81989727 - L1PB1 LINE L1 -2 6149 5413 1965 102 0 0 chr6 107289827 107290082 -81989472 - AluY SINE Alu -4 307 53 6025 159 18 32 chr6 107290082 107291527 -81988027 - L1PB1 LINE L1 -738 5413 4006 7277 155 29 5 chr6 107292092 107293353 -81986201 - HSMAR2 DNA Mariner -10 1292 2 846 324 82 3 chr6 107293483 107293863 -81985691 + HAL1 LINE L1 459 868 -1639 261 284 14 93 chr6 107294265 107294335 -81985219 + HAL1 LINE L1 976 1050 -1457 1671 168 3 42 chr6 107294335 107294468 -81985086 + AluSx SINE Alu 1 138 -185 2187 116 0 0 chr6 107294468 107294761 -81984793 + AluSg SINE Alu 2 294 -16 1671 168 3 42 chr6 107294761 107294962 -81984592 + AluSx SINE Alu 138 323 0 261 284 14 93 chr6 107294962 107295103 -81984451 + HAL1 LINE L1 1050 1173 -1334 210 154 0 0 chr6 107295854 107295893 -81983661 + A-rich Low_complexity Low_complexity 1 39 0 279 294 66 66 chr6 107298024 107298160 -81981394 + L2 LINE L2 3137 3272 0 14130 190 42 6 chr6 107298293 107300938 -81978616 + L1MA2 LINE L1 19 2759 -4806 2054 102 26 41 chr6 107300942 107301286 -81978268 - L1M1 LINE L1 -4463 3102 2764 * 5600 159 10 9 chr6 107301278 107302297 -81977257 + L1MA2 LINE L1 6704 7723 0 183 80 0 0 chr6 107302683 107302708 -81976846 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr6 107303045 107303073 -81976481 + AT_rich Low_complexity Low_complexity 1 28 0 444 19 0 0 chr6 107303167 107303220 -81976334 + (TG)n Simple_repeat Simple_repeat 2 54 0 857 282 75 20 chr6 107304706 107305345 -81974209 - L1M4 LINE L1 -2452 4192 3519 369 197 0 0 chr6 107305355 107305421 -81974133 - MER1B DNA MER1_type 0 339 274 1717 169 67 14 chr6 107305421 107305777 -81973777 + THE1C LTR MaLR 1 375 0 9006 143 34 38 chr6 107305779 107307363 -81972191 + THE1C-int LTR MaLR 3 1580 0 1467 146 122 12 chr6 107307373 107307686 -81971868 + THE1C LTR MaLR 3 367 -8 1477 220 27 0 chr6 107307689 107307948 -81971606 - MER1B DNA MER1_type -73 266 1 917 297 9 0 chr6 107307951 107308278 -81971276 - L1M4 LINE L1 -3131 3513 3184 2629 210 128 11 chr6 107308362 107309066 -81970488 - LTR48 LTR ERV1 0 787 2 372 320 58 40 chr6 107309068 107309346 -81970208 - L1M4 LINE L1 -4149 2497 2215 1779 289 46 25 chr6 107309371 107310240 -81969314 - L1M4 LINE L1 -4553 2093 1207 322 239 0 0 chr6 107310294 107310365 -81969189 - L1M4 LINE L1 -5344 1198 1128 396 194 24 16 chr6 107310374 107310498 -81969056 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 5111 136 32 15 chr6 107310500 107311378 -81968176 - L1PB3 LINE L1 -7 6147 5255 3688 245 40 33 chr6 107311411 107312490 -81967064 - L1M4 LINE L1 -5437 1105 20 345 247 84 39 chr6 107312496 107312650 -81966904 - L1MC4a LINE L1 -501 7307 7147 * 465 235 0 0 chr6 107312646 107312748 -81966806 - L1MC4 LINE L1 -985 7057 6956 200 143 24 0 chr6 107313956 107313998 -81965556 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 57 0 0 chr6 107317187 107317222 -81962332 + AT_rich Low_complexity Low_complexity 1 35 0 918 293 76 22 chr6 107317839 107318208 -81961346 - MLT1I LTR MaLR -17 392 4 186 43 0 0 chr6 107318822 107318845 -81960709 + (GAA)n Simple_repeat Simple_repeat 2 24 0 203 224 0 53 chr6 107320968 107321044 -81958510 + (CATTA)n Simple_repeat Simple_repeat 4 75 0 505 28 28 0 chr6 107321670 107321741 -81957813 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 1952 104 53 7 chr6 107321846 107322145 -81957409 + AluSp SINE Alu 1 313 0 354 107 0 0 chr6 107324253 107324309 -81955245 + (CA)n Simple_repeat Simple_repeat 1 56 0 29 0 0 0 chr6 107325825 107325854 -81953700 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr6 107326472 107326514 -81953040 + AT_rich Low_complexity Low_complexity 1 42 0 475 173 67 207 chr6 107327759 107327953 -81951601 + HsTC2 DNA Tc2 1288 1507 -391 545 64 26 0 chr6 107327953 107328031 -81951523 + L1PA5 LINE L1 6075 6154 0 475 173 67 207 chr6 107328031 107328172 -81951382 + HsTC2 DNA Tc2 1507 1749 -149 1278 236 20 10 chr6 107328172 107328464 -81951090 + AluJb SINE Alu 1 295 -7 475 173 67 207 chr6 107328464 107328485 -81951069 + HsTC2 DNA Tc2 1749 1771 -127 402 155 155 10 chr6 107328560 107328657 -81950897 + HsTC2 DNA Tc2 1782 1892 -6 27 49 0 0 chr6 107330071 107330112 -81949442 + AT_rich Low_complexity Low_complexity 1 41 0 690 185 0 30 chr6 107330130 107330265 -81949289 + MIR SINE MIR 88 218 -44 181 367 156 31 chr6 107330512 107330768 -81948786 + L3 LINE CR1 1249 1536 -41 22 70 0 0 chr6 107332761 107332804 -81946750 + AT_rich Low_complexity Low_complexity 1 43 0 62 68 0 0 chr6 107332894 107333012 -81946542 + AT_rich Low_complexity Low_complexity 1 118 0 1081 235 48 59 chr6 107333107 107333499 -81946055 + MLT1B LTR MaLR 3 390 0 521 288 99 25 chr6 107333747 107334217 -81945337 - L1ME3 LINE L1 -278 5884 5459 238 381 21 0 chr6 107335734 107335831 -81943723 + L2 LINE L2 2243 2341 -973 1966 224 3 0 chr6 107335963 107336347 -81943207 - MLT1B LTR MaLR -5 385 1 242 327 67 7 chr6 107336365 107336515 -81943039 + L2 LINE L2 2481 2639 -675 1592 261 83 57 chr6 107336574 107337236 -81942318 - MER76 LTR ERV -7 681 3 691 321 25 4 chr6 107337257 107337497 -81942057 + MIR SINE MIR 18 262 0 21 36 0 0 chr6 107337542 107337570 -81941984 + AT_rich Low_complexity Low_complexity 1 28 0 1356 301 113 6 chr6 107339680 107340151 -81939403 + MLT1G1 LTR MaLR 75 595 0 341 374 101 17 chr6 107340495 107340792 -81938762 + L2 LINE L2 2384 2705 -609 341 264 86 35 chr6 107341055 107341229 -81938325 + L2 LINE L2 3119 3301 -12 22 56 0 0 chr6 107341717 107341753 -81937801 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr6 107342086 107342114 -81937440 + AT_rich Low_complexity Low_complexity 1 28 0 460 287 77 92 chr6 107342477 107342738 -81936816 - MIR SINE MIR -4 258 2 352 317 44 81 chr6 107342782 107343053 -81936501 + MIR SINE MIR 2 262 0 224 352 11 23 chr6 107343444 107343532 -81936022 + MER91A DNA MER1_type 18 104 -92 314 287 38 75 chr6 107344051 107344270 -81935284 - L1ME LINE L1 -482 5639 5421 450 257 132 27 chr6 107344476 107344707 -81934847 - L1ME3 LINE L1 -71 6099 5846 348 271 29 6 chr6 107346078 107346248 -81933306 + (TTTA)n Simple_repeat Simple_repeat 2 175 0 22 0 0 0 chr6 107346285 107346307 -81933247 + AT_rich Low_complexity Low_complexity 1 22 0 1663 216 97 31 chr6 107346635 107347121 -81932433 - MLT2B1 LTR ERVL -2 518 1 303 49 0 0 chr6 107347626 107347667 -81931887 + (CA)n Simple_repeat Simple_repeat 2 42 0 180 0 0 0 chr6 107347783 107347803 -81931751 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 346 287 0 0 chr6 107347803 107347890 -81931664 + CT-rich Low_complexity Low_complexity 2 88 0 242 359 78 0 chr6 107348472 107348601 -81930953 + MIR SINE MIR 40 179 -66 23 0 0 0 chr6 107350336 107350359 -81929195 + AT_rich Low_complexity Low_complexity 1 23 0 1520 102 148 4 chr6 107350829 107351065 -81928489 - THE1C LTR MaLR -105 270 1 8537 124 78 46 chr6 107351065 107352118 -81927436 - THE1C-int LTR MaLR 0 1580 461 2476 48 0 32 chr6 107352118 107352432 -81927122 - AluY SINE Alu -7 304 1 8537 124 78 46 chr6 107352432 107352909 -81926645 - THE1C-int LTR MaLR -1119 461 1 2399 146 0 5 chr6 107352909 107353286 -81926268 - THE1C LTR MaLR 0 375 1 4562 96 34 6 chr6 107353426 107354112 -81925442 + L1PA14 LINE L1 5456 6160 -1 227 267 178 22 chr6 107354147 107354282 -81925272 - L2 LINE L2 -661 2653 2498 500 291 62 53 chr6 107354715 107354959 -81924595 - MIR SINE MIR 0 262 17 1293 216 57 54 chr6 107356874 107357226 -81922328 + MLT1A2 LTR MaLR 4 356 -18 24 0 0 0 chr6 107357594 107357618 -81921936 + AT_rich Low_complexity Low_complexity 1 24 0 213 178 0 0 chr6 107358810 107358855 -81920699 + (TA)n Simple_repeat Simple_repeat 2 46 0 1779 145 0 11 chr6 107359411 107359687 -81919867 - AluSx SINE Alu -7 305 33 942 242 161 9 chr6 107359941 107360276 -81919278 + HAL1 LINE L1 11 396 -2111 988 298 80 8 chr6 107360353 107360715 -81918839 + LTR16A LTR ERVL 36 423 -27 1168 289 140 17 chr6 107360786 107361595 -81917959 + HAL1 LINE L1 467 1374 -1133 22 35 0 0 chr6 107361617 107361646 -81917908 + AT_rich Low_complexity Low_complexity 1 29 0 248 170 21 0 chr6 107361745 107361792 -81917762 + HAL1 LINE L1 1499 1546 -961 324 241 66 117 chr6 107361806 107362336 -81917218 + L1MC5 LINE L1 7405 7907 -54 259 311 14 54 chr6 107362380 107362528 -81917026 + HAL1 LINE L1 1660 1801 -706 243 175 0 0 chr6 107362581 107362638 -81916916 + (CA)n Simple_repeat Simple_repeat 2 58 0 279 306 70 94 chr6 107363163 107363618 -81915936 - LTR67 LTR ERVL 0 557 114 272 228 44 52 chr6 107363653 107363789 -81915765 + L1MC5 LINE L1 7411 7545 -416 232 164 30 0 chr6 107364598 107364665 -81914889 + (TA)n Simple_repeat Simple_repeat 2 70 0 21 36 0 0 chr6 107365869 107365897 -81913657 + AT_rich Low_complexity Low_complexity 1 28 0 288 53 0 0 chr6 107366577 107366615 -81912939 + (GA)n Simple_repeat Simple_repeat 2 39 0 267 150 0 0 chr6 107367327 107367387 -81912167 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 2021 182 59 5 chr6 107367519 107367925 -81911629 + MSTA LTR MaLR 1 428 0 207 162 0 0 chr6 107369079 107369116 -81910438 + (CA)n Simple_repeat Simple_repeat 2 38 0 231 276 102 55 chr6 107369287 107369414 -81910140 - MIR SINE MIR -113 149 17 1894 156 32 41 chr6 107369476 107369816 -81909738 - MER1B DNA MER1_type 0 337 1 23 33 0 0 chr6 107370515 107370545 -81909009 + AT_rich Low_complexity Low_complexity 1 30 0 1786 99 10 103 chr6 107371007 107371309 -81908245 + AluSg SINE Alu 2 275 -35 236 245 61 41 chr6 107371632 107371730 -81907824 - Charlie7 DNA MER1_type -2512 100 1 320 210 16 0 chr6 107372395 107372457 -81907097 - MER5A DNA MER1_type -118 71 9 993 212 23 46 chr6 107373072 107373289 -81906265 + MER58A DNA MER1_type 1 212 -12 24 32 0 0 chr6 107373306 107373337 -81906217 + AT_rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr6 107373414 107373437 -81906117 + (T)n Simple_repeat Simple_repeat 1 23 0 2282 91 0 3 chr6 107374148 107374445 -81905109 + AluSq SINE Alu 2 297 -16 701 306 61 36 chr6 107374944 107375303 -81904251 + Charlie8 DNA MER1_type 87 454 -1963 246 240 32 120 chr6 107375593 107375693 -81903861 - MIR SINE MIR -46 162 69 220 268 0 18 chr6 107377514 107377570 -81901984 + MER5A DNA MER1_type 113 167 -22 616 192 51 0 chr6 107378587 107378764 -81900790 - L1MA7 LINE L1 -5 6286 6101 1617 169 124 17 chr6 107378765 107378848 -81900706 + L1MA7 LINE L1 5696 5769 -522 243 0 0 0 chr6 107378848 107378875 -81900679 + (CA)n Simple_repeat Simple_repeat 2 28 0 1617 169 124 17 chr6 107378875 107379147 -81900407 + L1MA7 LINE L1 5769 6089 -202 684 295 12 85 chr6 107379160 107379502 -81900052 + MLT2C1 LTR ERVL 1 317 -80 383 180 29 166 chr6 107379855 107379994 -81899560 + L1MD3 LINE L1 6836 7000 -853 286 225 40 22 chr6 107380002 107380285 -81899269 + L1MD3 LINE L1 7622 7944 -51 1586 219 104 39 chr6 107380285 107380728 -81898826 + MLT2B1 LTR ERVL 1 480 -40 332 22 0 22 chr6 107380728 107380774 -81898780 + (TG)n Simple_repeat Simple_repeat 2 46 0 1586 219 104 39 chr6 107380774 107380818 -81898736 + MLT2B1 LTR ERVL 480 520 0 286 225 40 22 chr6 107380818 107380861 -81898693 + L1MD3 LINE L1 7944 7985 -10 296 295 45 0 chr6 107381299 107381411 -81898143 + MER103 DNA DNA 8 124 -42 240 35 0 0 chr6 107382539 107382568 -81896986 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1321 273 95 36 chr6 107382906 107383851 -81895703 + L1ME LINE L1 924 1885 -4655 405 285 18 48 chr6 107383896 107384061 -81895493 + L1ME LINE L1 2357 2516 -4024 6677 151 20 18 chr6 107384071 107385292 -81894262 - Tigger3b DNA MER2_type -1 1230 7 562 164 34 28 chr6 107386407 107386584 -81892970 + GA-rich Low_complexity Low_complexity 3 180 0 1320 282 60 17 chr6 107386971 107387714 -81891840 + L1ME LINE L1 2392 3167 -3373 245 230 101 56 chr6 107387709 107387996 -81891558 + L1ME LINE L1 3552 3851 -2689 * 5574 224 89 3 chr6 107387994 107389171 -81890383 + L1M1 LINE L1 13 1290 -6275 1848 128 40 9 chr6 107389170 107389497 -81890057 + L1MA3 LINE L1 5924 6260 -45 * 488 168 11 0 chr6 107389496 107389591 -81889963 + L1PA16 LINE L1 5415 5510 -656 * 254 122 0 0 chr6 107389586 107389627 -81889927 - L1P LINE L1 -4125 2021 1981 * 5429 57 7 1 chr6 107389627 107390313 -81889241 + L1PA7 LINE L1 5463 6152 -2 2801 145 87 11 chr6 107390333 107390863 -81888691 + L1PA16 LINE L1 5597 6166 0 245 163 0 0 chr6 107390872 107390921 -81888633 + L1MA2 LINE L1 6246 6294 -10 436 249 92 92 chr6 107390941 107391258 -81888296 + L1ME1 LINE L1 3491 3807 -2339 2146 227 46 72 chr6 107391261 107391868 -81887686 + L1ME1 LINE L1 5318 5904 -262 2292 116 6 0 chr6 107391868 107392179 -81887375 - AluSq SINE Alu 0 313 1 2146 227 46 72 chr6 107392179 107392325 -81887229 + L1ME1 LINE L1 5904 6052 -114 2297 246 71 26 chr6 107392481 107392586 -81886968 + L1ME1 LINE L1 5325 5424 -742 3459 162 9 17 chr6 107392586 107393222 -81886332 + L1MC1 LINE L1 5703 6333 0 2297 246 71 26 chr6 107393222 107393917 -81885637 + L1ME1 LINE L1 5424 6161 -5 499 262 180 5 chr6 107394446 107394652 -81884902 - MIR SINE MIR 0 262 21 29 47 0 0 chr6 107395663 107395706 -81883848 + AT_rich Low_complexity Low_complexity 1 43 0 1755 162 27 0 chr6 107395714 107396010 -81883544 - AluSg SINE Alu -6 304 1 6377 64 5 1 chr6 107396281 107397646 -81881908 - L1PA5 LINE L1 -57 6097 4726 198 0 0 0 chr6 107397797 107397819 -81881735 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1491 176 3 40 chr6 107397823 107398119 -81881435 - AluJo SINE Alu -27 285 1 198 369 0 0 chr6 107398578 107398643 -81880911 + MIR3 SINE MIR 90 154 -54 23 0 0 0 chr6 107398760 107398783 -81880771 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr6 107399065 107399102 -81880452 + AT_rich Low_complexity Low_complexity 1 37 0 225 115 16 49 chr6 107399230 107399291 -81880263 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 1620 148 15 26 chr6 107399292 107399563 -81879991 - AluSx SINE Alu -19 293 26 2538 62 26 3 chr6 107399794 107400133 -81879421 + L1PA7 LINE L1 5794 6140 -14 2550 58 0 0 chr6 107400530 107400841 -81878713 + AluY SINE Alu 1 311 0 22 56 0 0 chr6 107400888 107400924 -81878630 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr6 107401495 107401518 -81878036 + AT_rich Low_complexity Low_complexity 1 23 0 291 85 0 0 chr6 107403525 107403572 -81875982 + (A)n Simple_repeat Simple_repeat 1 47 0 220 359 39 10 chr6 107404457 107404560 -81874994 - MER5A DNA MER1_type 0 189 84 301 67 33 33 chr6 107405548 107405608 -81873946 - L1PA14 LINE L1 -2 6159 6100 1822 149 4 7 chr6 107405608 107405949 -81873605 - L1PA14 LINE L1 -142 6019 5675 392 58 0 0 chr6 107405921 107405973 -81873581 + L1P4 LINE L1 5675 5726 -437 * 2893 107 5 2 chr6 107406009 107406431 -81873123 - L1P4 LINE L1 -448 5726 5304 234 222 0 0 chr6 107406740 107406785 -81872769 - MIR SINE MIR -63 145 101 1593 185 37 66 chr6 107407385 107407764 -81871790 + MLT1B LTR MaLR 23 390 0 1850 240 33 13 chr6 107408025 107408483 -81871071 - MLT1C LTR MaLR 0 467 1 25 75 0 0 chr6 107408972 107409025 -81870529 + AT_rich Low_complexity Low_complexity 1 53 0 183 205 0 0 chr6 107409143 107409182 -81870372 + CT-rich Low_complexity Low_complexity 5 43 0 3344 134 17 8 chr6 107411581 107412103 -81867451 - MER1A DNA MER1_type 0 527 1 281 291 111 0 chr6 107412208 107412325 -81867229 - MIR SINE MIR -96 166 37 612 13 0 0 chr6 107413165 107413240 -81866314 - AluYb8 SINE Alu -5 313 239 18675 205 44 22 chr6 107415497 107421920 -81857634 + L1MA1 LINE L1 23 6669 -896 4409 186 8 8 chr6 107421924 107422822 -81856732 + L1PA7 LINE L1 5255 6152 -2 3111 129 41 0 chr6 107422822 107423332 -81856222 + L1MA1 LINE L1 7188 7721 0 213 39 0 0 chr6 107423593 107423619 -81855935 + (TA)n Simple_repeat Simple_repeat 1 26 0 325 167 0 118 chr6 107423629 107423731 -81855823 + L1MC4 LINE L1 6614 6703 -1339 345 217 93 16 chr6 107423742 107423871 -81855683 - MIR SINE MIR -3 259 121 1964 52 0 8 chr6 107424245 107424497 -81855057 + L1PA7 LINE L1 5890 6139 -15 234 259 111 25 chr6 107424593 107424674 -81854880 + MIR SINE MIR 67 154 -108 229 208 0 0 chr6 107424696 107424744 -81854810 + L2 LINE L2 3222 3269 -3 405 0 0 0 chr6 107425458 107425503 -81854051 + (CA)n Simple_repeat Simple_repeat 2 46 0 31 44 0 0 chr6 107426801 107426846 -81852708 + AT_rich Low_complexity Low_complexity 1 45 0 1099 267 27 40 chr6 107427486 107427860 -81851694 - LTR40c LTR ERVL -37 428 60 198 0 0 0 chr6 107427860 107427882 -81851672 + (T)n Simple_repeat Simple_repeat 1 22 0 842 294 24 16 chr6 107428268 107428520 -81851034 - MIR SINE MIR -6 256 3 209 226 194 32 chr6 107428530 107428592 -81850962 + L2 LINE L2 3209 3280 -33 22 0 0 0 chr6 107428745 107428767 -81850787 + AT_rich Low_complexity Low_complexity 1 22 0 321 218 39 0 chr6 107428960 107429038 -81850516 + MIR3 SINE MIR 121 201 -7 192 338 135 0 chr6 107429685 107429759 -81849795 - MIR SINE MIR -107 155 72 1423 126 190 92 chr6 107430112 107430341 -81849213 - MSTA LTR MaLR 0 428 223 2500 37 0 47 chr6 107430341 107430663 -81848891 - AluY SINE Alu -4 307 1 1423 126 190 92 chr6 107430663 107430823 -81848731 - MSTA LTR MaLR -205 223 1 421 285 60 52 chr6 107431776 107432043 -81847511 + MLT1J LTR MaLR 224 492 -19 2185 114 0 3 chr6 107432059 107432367 -81847187 - AluSg SINE Alu -3 307 1 61 68 0 0 chr6 107432925 107433042 -81846512 + AT_rich Low_complexity Low_complexity 1 117 0 656 241 15 0 chr6 107433084 107433221 -81846333 + FAM SINE Alu 1 40 -9 314 331 55 28 chr6 107433237 107433382 -81846172 - L1ME LINE L1 -459 5662 5514 661 170 0 0 chr6 107433384 107433496 -81846058 + FRAM SINE Alu 51 162 -14 32 57 0 0 chr6 107433567 107433620 -81845934 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr6 107433837 107433858 -81845696 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 107433959 107433980 -81845574 + AT_rich Low_complexity Low_complexity 1 21 0 3525 121 3 73 chr6 107434593 107435239 -81844315 - LTR43 LTR ERV1 0 602 2 24 53 0 0 chr6 107436341 107436379 -81843175 + AT_rich Low_complexity Low_complexity 1 38 0 430 299 32 3 chr6 107436512 107436649 -81842905 - MIR SINE MIR -64 144 18 207 0 0 0 chr6 107437907 107437930 -81841624 + (CAA)n Simple_repeat Simple_repeat 2 24 0 29 0 0 0 chr6 107438102 107438131 -81841423 + AT_rich Low_complexity Low_complexity 1 29 0 765 233 233 12 chr6 107438214 107438783 -81840771 + LTR50 LTR ERVL 8 793 -2 186 312 130 0 chr6 107438883 107438960 -81840594 - L2 LINE L2 -31 3282 3196 391 275 57 63 chr6 107439113 107439448 -81840106 - L2 LINE L2 -393 2921 2589 877 152 0 0 chr6 107439589 107439721 -81839833 + AluSq/x SINE Alu 2 133 -179 21 57 0 0 chr6 107440253 107440288 -81839266 + AT_rich Low_complexity Low_complexity 1 35 0 1908 258 63 25 chr6 107440392 107441023 -81838531 - L1ME1 LINE L1 -124 6042 5388 208 276 155 17 chr6 107441316 107441432 -81838122 - MIR SINE MIR -57 205 74 226 197 0 15 chr6 107442114 107442180 -81837374 - L1MC4 LINE L1 -1334 6708 6644 2188 140 11 26 chr6 107442228 107442606 -81836948 + Tigger2a DNA MER2_type 2 373 -61 443 306 48 69 chr6 107442617 107442908 -81836646 + L2 LINE L2 1027 1311 -2003 324 0 0 0 chr6 107443463 107443499 -81836055 + (CA)n Simple_repeat Simple_repeat 2 37 0 304 396 20 7 chr6 107443534 107443683 -81835871 + L3 LINE CR1 1394 1544 -33 23 54 0 0 chr6 107444602 107444639 -81834915 + AT_rich Low_complexity Low_complexity 1 37 0 283 326 52 12 chr6 107445793 107445965 -81833589 - HAL1 LINE L1 -84 2423 2245 30 27 0 0 chr6 107446080 107446117 -81833437 + AT_rich Low_complexity Low_complexity 1 37 0 802 272 14 1 chr6 107446946 107447161 -81832393 - MIR SINE MIR -15 247 31 281 290 54 21 chr6 107447287 107447546 -81832008 - HAL1b LINE L1 -832 1675 373 317 282 106 14 chr6 107447627 107447769 -81831785 - HAL1 LINE L1 -1322 1185 1031 5655 201 115 59 chr6 107448245 107449864 -81829690 - MER52A LTR ERV1 0 1755 46 333 305 148 24 chr6 107450341 107450551 -81829003 - L1M2 LINE L1 -6225 624 389 539 260 57 109 chr6 107451137 107451468 -81828086 + L2 LINE L2 1707 2020 -1294 2083 124 3 7 chr6 107451527 107451825 -81827729 - AluSx SINE Alu -11 301 5 935 225 53 76 chr6 107451918 107452220 -81827334 + LTR52 LTR ERVL 79 373 -48 278 292 133 9 chr6 107452222 107452335 -81827219 + L2 LINE L2 2096 2222 -1092 398 113 57 0 chr6 107452339 107452463 -81827091 + (TA)n Simple_repeat Simple_repeat 2 132 0 1637 308 110 34 chr6 107452468 107452896 -81826658 + L2 LINE L2 2260 2654 -659 1802 132 0 99 chr6 107452896 107453238 -81826316 + AluSx SINE Alu 1 308 -4 1637 308 110 34 chr6 107453238 107453778 -81825776 + L2 LINE L2 2654 3311 -2 216 111 0 0 chr6 107454040 107454076 -81825478 + (TG)n Simple_repeat Simple_repeat 1 36 0 22 80 0 0 chr6 107454563 107454613 -81824941 + AT_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr6 107456987 107457016 -81822538 + AT_rich Low_complexity Low_complexity 1 29 0 4739 184 31 33 chr6 107457332 107458206 -81821348 + L1MA8 LINE L1 4963 5805 -486 237 65 0 0 chr6 107458206 107458237 -81821317 + (CA)n Simple_repeat Simple_repeat 2 32 0 4739 184 31 33 chr6 107458237 107458719 -81820835 + L1MA8 LINE L1 5805 6287 -4 379 237 32 0 chr6 107458721 107458814 -81820740 + MER5A DNA MER1_type 11 106 -83 1493 128 155 0 chr6 107459042 107459300 -81820254 + AluSx SINE Alu 12 309 -3 200 312 21 57 chr6 107459669 107459810 -81819744 - L2 LINE L2 -464 2850 2715 265 269 21 41 chr6 107460555 107460700 -81818854 - L1ME4a LINE L1 -31 6090 5949 382 340 76 55 chr6 107461028 107461265 -81818289 - HAL1b LINE L1 -605 743 513 1872 189 83 5 chr6 107461265 107461662 -81817892 - MSTA LTR MaLR 0 428 1 382 340 76 55 chr6 107461662 107461938 -81817616 - HAL1b LINE L1 -835 513 219 216 0 0 0 chr6 107463018 107463042 -81816512 + (CA)n Simple_repeat Simple_repeat 1 24 0 647 160 24 24 chr6 107463048 107463173 -81816381 - AluJb SINE Alu -59 253 129 232 405 25 0 chr6 107464669 107464790 -81814764 + MIR SINE MIR 52 175 -87 216 0 0 0 chr6 107464927 107464951 -81814603 + (TG)n Simple_repeat Simple_repeat 2 25 0 332 263 140 45 chr6 107465200 107465379 -81814175 - MIR SINE MIR -2 260 65 1372 244 95 65 chr6 107465880 107466646 -81812908 - HAL1 LINE L1 -728 1779 991 1597 238 22 3 chr6 107466778 107467135 -81812419 + MLT1A1 LTR MaLR 1 364 -1 213 152 45 15 chr6 107467323 107467389 -81812165 + (TA)n Simple_repeat Simple_repeat 1 68 0 293 175 42 7 chr6 107467405 107467548 -81812006 + (TA)n Simple_repeat Simple_repeat 1 148 0 192 253 66 55 chr6 107468802 107468893 -81810661 + MIR SINE MIR 49 140 -122 187 289 127 78 chr6 107469226 107469368 -81810186 + L2 LINE L2 3124 3272 0 1732 168 37 19 chr6 107469508 107469830 -81809724 - MLT2C1 LTR ERVL -59 338 11 2021 68 0 79 chr6 107470408 107470729 -81808825 + AluY SINE Alu 21 318 0 2323 114 6 3 chr6 107470955 107471288 -81808266 + THE1C LTR MaLR 42 375 0 36 23 0 0 chr6 107471396 107471439 -81808115 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 107471625 107471646 -81807908 + AT_rich Low_complexity Low_complexity 1 21 0 1240 179 289 77 chr6 107471890 107472347 -81807207 + MLT2B3 LTR ERVL 1 554 0 25 0 0 0 chr6 107472561 107472586 -81806968 + AT_rich Low_complexity Low_complexity 1 25 0 240 374 47 11 chr6 107472613 107472803 -81806751 - MIR SINE MIR -18 244 48 27 49 0 0 chr6 107473396 107473437 -81806117 + AT_rich Low_complexity Low_complexity 1 41 0 181 254 51 0 chr6 107473823 107473882 -81805672 - MIR SINE MIR -72 190 129 1974 141 0 3 chr6 107474028 107474319 -81805235 + AluSx SINE Alu 3 292 -20 35 0 0 0 chr6 107474420 107474455 -81805099 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr6 107474630 107474659 -81804895 + AT_rich Low_complexity Low_complexity 1 29 0 328 286 164 29 chr6 107475009 107475180 -81804374 + MIR SINE MIR 45 238 -24 22 80 0 0 chr6 107475244 107475294 -81804260 + AT_rich Low_complexity Low_complexity 1 50 0 180 77 0 0 chr6 107475810 107475836 -81803718 + (A)n Simple_repeat Simple_repeat 1 26 0 704 152 24 0 chr6 107476301 107476426 -81803128 + AluSg/x SINE Alu 176 303 -9 1764 188 76 3 chr6 107476654 107476984 -81802570 - MLT1A1 LTR MaLR -11 354 1 21 0 0 0 chr6 107477940 107477961 -81801593 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr6 107478291 107478339 -81801215 + AT_rich Low_complexity Low_complexity 1 48 0 21 71 0 0 chr6 107479294 107479336 -81800218 + AT_rich Low_complexity Low_complexity 1 42 0 189 269 215 39 chr6 107479347 107479477 -81800077 - MIR SINE MIR -81 181 29 33 0 0 0 chr6 107479763 107479796 -81799758 + AT_rich Low_complexity Low_complexity 1 33 0 2325 127 36 5 chr6 107479843 107480254 -81799300 + L1MA2 LINE L1 5881 6304 0 288 0 0 0 chr6 107482963 107482995 -81796559 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 368 299 32 25 chr6 107483418 107483575 -81795979 - MIR SINE MIR -52 210 53 22 56 0 0 chr6 107483873 107483909 -81795645 + AT_rich Low_complexity Low_complexity 1 36 0 306 0 0 0 chr6 107484281 107484315 -81795239 + (TA)n Simple_repeat Simple_repeat 2 35 0 216 86 0 0 chr6 107484316 107484351 -81795203 + (TC)n Simple_repeat Simple_repeat 2 36 0 309 307 121 33 chr6 107487227 107487442 -81792112 - L1ME4a LINE L1 -169 5952 5719 21 36 0 0 chr6 107487819 107487847 -81791707 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr6 107488279 107488326 -81791228 + AT_rich Low_complexity Low_complexity 1 47 0 246 288 129 36 chr6 107489342 107489481 -81790073 + MER5B DNA MER1_type 26 177 -1 358 205 51 0 chr6 107489766 107489844 -81789710 + L1MD2 LINE L1 6135 6216 -143 249 83 167 17 chr6 107489850 107489910 -81789644 + L1MD2 LINE L1 6287 6355 -4 353 294 91 53 chr6 107491689 107492029 -81787525 + L1M4 LINE L1 2670 3022 -3124 227 291 22 112 chr6 107493392 107493526 -81786028 - MER5B DNA MER1_type -51 127 6 697 151 0 17 chr6 107493864 107493983 -81785571 + FLAM_C SINE Alu 3 119 -24 307 299 102 29 chr6 107494019 107494156 -81785398 + HAL1 LINE L1 1174 1320 -1187 21 0 0 0 chr6 107494389 107494410 -81785144 + AT_rich Low_complexity Low_complexity 1 21 0 180 125 0 0 chr6 107494682 107494714 -81784840 + (A)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr6 107495329 107495350 -81784204 + AT_rich Low_complexity Low_complexity 1 21 0 195 129 0 0 chr6 107497025 107497056 -81782498 + (A)n Simple_repeat Simple_repeat 1 31 0 208 196 29 118 chr6 107497056 107497158 -81782396 + MIR SINE MIR 115 207 -55 284 297 130 36 chr6 107497351 107497543 -81782011 + L2 LINE L2 3104 3313 0 2485 66 0 0 chr6 107497926 107498231 -81781323 - AluY SINE Alu -6 305 1 275 261 144 0 chr6 107498630 107498741 -81780813 + MER63 DNA MER1_type 1 753 -83 387 0 0 0 chr6 107499450 107499493 -81780061 + (CA)n Simple_repeat Simple_repeat 2 44 0 228 323 0 0 chr6 107500598 107500663 -81778891 - L2 LINE L2 -86 3227 3163 14348 150 34 47 chr6 107501366 107504097 -81775457 + Tigger2 DNA MER2_type 23 2718 0 252 398 60 28 chr6 107504898 107505114 -81774440 + L2 LINE L2 2262 2484 -830 22 0 0 0 chr6 107506401 107506423 -81773131 + AT_rich Low_complexity Low_complexity 1 22 0 1044 237 51 110 chr6 107507013 107507401 -81772153 + MLT2B1 LTR ERVL 1 460 -60 16695 199 66 40 chr6 107507480 107507594 -81771960 + ERVL-B1 LTR ERVL 2 112 -5652 2369 66 0 0 chr6 107507594 107507882 -81771672 + AluY SINE Alu 11 298 -13 16695 199 66 40 chr6 107507882 107509893 -81769661 + ERVL-B1 LTR ERVL 112 2267 -3497 189 0 0 0 chr6 107509893 107509914 -81769640 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 16695 199 66 40 chr6 107509914 107511565 -81767989 + ERVL-B1 LTR ERVL 2267 3875 -1889 189 0 0 0 chr6 107511576 107511597 -81767957 + (TGGGGG)n Simple_repeat Simple_repeat 1 21 0 24 53 0 0 chr6 107511657 107511695 -81767859 + AT_rich Low_complexity Low_complexity 1 38 0 23 68 0 0 chr6 107511759 107511803 -81767751 + AT_rich Low_complexity Low_complexity 1 44 0 216 323 62 10 chr6 107511883 107511979 -81767575 - MER5A DNA MER1_type -1 188 88 * 477 161 161 95 chr6 107511906 107511998 -81767556 + MER5A DNA MER1_type 39 144 -45 1701 139 45 21 chr6 107511998 107512286 -81767268 + AluSx SINE Alu 1 295 -17 477 161 161 95 chr6 107512286 107512330 -81767224 + MER5A DNA MER1_type 144 184 -5 290 281 121 65 chr6 107512340 107512709 -81766845 - LTR16A1 LTR ERVL -33 424 15 31 0 0 0 chr6 107512964 107512995 -81766559 + AT_rich Low_complexity Low_complexity 1 31 0 317 228 76 86 chr6 107514174 107514496 -81765058 + LTR16A1 LTR ERVL 94 455 -2 596 318 71 8 chr6 107514505 107514772 -81764782 + HERV16 LTR ERVL 8 291 -4705 364 294 57 34 chr6 107515145 107515322 -81764232 - MIR SINE MIR -48 214 34 359 258 67 45 chr6 107516205 107516383 -81763171 - MIR SINE MIR -48 214 33 415 307 8 16 chr6 107516487 107516614 -81762940 + MER94 DNA DNA 4 129 -5 203 304 47 0 chr6 107517072 107517144 -81762410 + MIR SINE MIR 69 144 -64 347 319 63 34 chr6 107517380 107517618 -81761936 - LTR16B LTR ERVL -124 340 96 471 304 44 69 chr6 107517661 107518095 -81761459 - HERV16 LTR ERVL -19 4977 4555 600 375 40 11 chr6 107518469 107518821 -81760733 - HERV16 LTR ERVL -1151 4613 4252 251 301 24 0 chr6 107519313 107519396 -81760158 - HERV16 LTR ERVL -4331 665 581 8586 108 30 11 chr6 107519519 107520775 -81758779 - HSMAR1 DNA Mariner -1 1286 7 216 215 11 43 chr6 107520775 107520868 -81758686 + (TA)n Simple_repeat Simple_repeat 1 90 0 483 335 37 39 chr6 107520928 107521283 -81758271 - LTR16B LTR ERVL -108 356 3 2032 158 111 5 chr6 107521442 107521829 -81757725 + MSTA LTR MaLR 1 428 0 294 254 21 0 chr6 107522046 107522188 -81757366 + (TA)n Simple_repeat Simple_repeat 2 146 0 208 263 0 18 chr6 107522192 107522249 -81757305 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 210 118 0 0 chr6 107522251 107522285 -81757269 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr6 107522957 107522985 -81756569 + AT_rich Low_complexity Low_complexity 1 28 0 206 375 50 12 chr6 107523239 107523319 -81756235 + L2 LINE L2 3140 3222 -50 460 266 77 0 chr6 107524631 107524676 -81754878 - L1MA10 LINE L1 -8 6326 6282 5934 258 69 33 chr6 107524676 107527967 -81751587 - L1ME1 LINE L1 -44 6122 2716 517 259 88 61 chr6 107528829 107529344 -81750210 + L1ME LINE L1 531 1107 -5007 677 262 183 33 chr6 107529372 107529989 -81749565 + L1ME LINE L1 1180 1939 -4322 721 315 15 29 chr6 107529992 107530332 -81749222 + L1ME2 LINE L1 5821 6155 -9 23 33 0 0 chr6 107530475 107530505 -81749049 + AT_rich Low_complexity Low_complexity 1 30 0 23 68 0 0 chr6 107531374 107531418 -81748136 + AT_rich Low_complexity Low_complexity 1 44 0 612 235 53 0 chr6 107532066 107532253 -81747301 - Charlie5 DNA MER1_type -27 2585 2389 491 268 77 11 chr6 107532276 107532459 -81747095 + LTR33A LTR ERVL 327 521 -2 505 209 0 0 chr6 107532531 107532636 -81746918 - MER53 DNA DNA -84 105 1 736 0 0 0 chr6 107533046 107533133 -81746421 + L1PA2 LINE L1 6068 6154 -1 785 287 157 37 chr6 107534105 107534481 -81745073 - LTR16A LTR ERVL -6 444 24 201 298 0 0 chr6 107535419 107535466 -81744088 - MIR SINE MIR -123 85 39 25 51 0 0 chr6 107536434 107536473 -81743081 + AT_rich Low_complexity Low_complexity 1 39 0 229 324 141 14 chr6 107537056 107537269 -81742285 + MIR SINE MIR 23 262 0 25 75 0 0 chr6 107537622 107537675 -81741879 + AT_rich Low_complexity Low_complexity 1 53 0 567 81 0 0 chr6 107539132 107539233 -81740321 + L1PA7 LINE L1 6068 6168 0 180 152 0 0 chr6 107539683 107539716 -81739838 + (TTA)n Simple_repeat Simple_repeat 2 34 0 34 55 0 0 chr6 107540992 107541047 -81738507 + AT_rich Low_complexity Low_complexity 1 55 0 2189 109 13 0 chr6 107541612 107541914 -81737640 - AluSc SINE Alu -3 306 1 27 49 0 0 chr6 107542058 107542099 -81737455 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr6 107543766 107543791 -81735763 + AT_rich Low_complexity Low_complexity 1 25 0 1194 210 110 57 chr6 107545265 107545637 -81733917 + MSTD LTR MaLR 1 392 -4 286 277 27 47 chr6 107545826 107545974 -81733580 + L1ME3A LINE L1 6020 6164 -6 357 274 95 46 chr6 107546283 107546568 -81732986 - L1M4 LINE L1 -3261 3383 3085 749 214 81 6 chr6 107546978 107547151 -81732403 - MER20 DNA MER1_type 0 219 34 2135 103 0 14 chr6 107547232 107547553 -81732001 + AluSq SINE Alu 1 317 0 372 429 31 0 chr6 107547990 107548181 -81731373 - MLT1K LTR MaLR -326 262 66 38 51 0 0 chr6 107548317 107548376 -81731178 + AT_rich Low_complexity Low_complexity 1 59 0 24 67 0 0 chr6 107548457 107548502 -81731052 + AT_rich Low_complexity Low_complexity 1 45 0 1426 191 16 40 chr6 107548756 107549060 -81730494 - AluJo SINE Alu -15 297 1 261 163 0 0 chr6 107549599 107549648 -81729906 + (TG)n Simple_repeat Simple_repeat 1 49 0 23 0 0 0 chr6 107550813 107550836 -81728718 + AT_rich Low_complexity Low_complexity 1 23 0 2314 54 0 4 chr6 107550896 107551176 -81728378 - AluY SINE Alu -12 299 21 203 189 0 0 chr6 107551679 107551716 -81727838 + A-rich Low_complexity Low_complexity 1 37 0 3443 224 49 11 chr6 107552818 107553875 -81725679 - L1MB7 LINE L1 -19 6165 5068 699 272 35 0 chr6 107553879 107554107 -81725447 - MER34 LTR ERV1 -303 239 4 2675 181 73 2 chr6 107554147 107554694 -81724860 + L1 LINE L1 3623 4208 -1938 2411 229 84 88 chr6 107554693 107555316 -81724238 - L1M4 LINE L1 -5437 1105 481 * 1056 160 0 0 chr6 107555316 107555497 -81724057 - L1MA3 LINE L1 0 6305 6125 2411 229 84 88 chr6 107555497 107555577 -81723977 - L1M4 LINE L1 -6061 481 402 459 0 0 0 chr6 107555577 107555628 -81723926 + (TG)n Simple_repeat Simple_repeat 2 52 0 203 0 37 0 chr6 107555627 107555654 -81723900 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 2411 229 84 88 chr6 107555628 107556007 -81723547 - L1M4 LINE L1 -6140 402 52 23 54 0 0 chr6 107557282 107557319 -81722235 + AT_rich Low_complexity Low_complexity 1 37 0 585 105 0 0 chr6 107558822 107558908 -81720646 + (GGGA)n Simple_repeat Simple_repeat 1 86 0 25 31 0 0 chr6 107559686 107559718 -81719836 + AT_rich Low_complexity Low_complexity 1 32 0 2137 136 3 0 chr6 107560128 107560438 -81719116 + AluSx SINE Alu 2 312 0 381 245 66 40 chr6 107560536 107560687 -81718867 + L2 LINE L2 3159 3313 0 190 335 213 0 chr6 107561445 107561633 -81717921 - L2 LINE L2 -3 3310 3083 23 0 0 0 chr6 107561633 107561656 -81717898 + AT_rich Low_complexity Low_complexity 1 23 0 234 348 131 36 chr6 107561917 107562360 -81717194 - L2 LINE L2 -547 2767 2283 271 226 0 0 chr6 107562404 107562466 -81717088 - L1M4 LINE L1 -3450 2696 2635 448 306 54 0 chr6 107562708 107562930 -81716624 - L1M4 LINE L1 -2630 3516 3283 312 274 104 0 chr6 107562953 107563059 -81716495 + MER94 DNA DNA 12 128 -6 22 80 0 0 chr6 107563145 107563195 -81716359 + AT_rich Low_complexity Low_complexity 1 50 0 2868 162 11 8 chr6 107563820 107564344 -81715210 + L1PA13 LINE L1 5638 6163 0 1538 180 61 0 chr6 107564355 107564649 -81714905 + L1PA16 LINE L1 5855 6166 0 222 264 194 23 chr6 107564674 107564803 -81714751 - L2 LINE L2 -81 3232 3082 297 299 15 52 chr6 107565314 107565448 -81714106 + MLT2F LTR ERVL 13 141 -522 671 220 33 33 chr6 107565485 107565667 -81713887 + MLT1E3 LTR MaLR 49 230 -394 504 281 82 67 chr6 107565502 107565833 -81713721 + MLT2C1 LTR ERVL 44 379 -18 * 368 241 0 3 chr6 107566039 107566155 -81713399 + L1PA14 LINE L1 5928 6041 -133 1054 270 73 40 chr6 107566270 107566696 -81712858 - MLT1D LTR MaLR -44 461 22 1919 131 9 40 chr6 107567441 107567762 -81711792 + AluSx SINE Alu 1 311 -1 567 274 26 13 chr6 107569500 107569653 -81709901 + MIR SINE MIR 6 160 -102 877 210 153 57 chr6 107570147 107570480 -81709074 + MLT1A1 LTR MaLR 1 365 0 4983 188 22 13 chr6 107570885 107571409 -81708145 + L1MA4 LINE L1 5064 5582 -718 180 0 0 0 chr6 107571409 107571429 -81708125 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4983 188 22 13 chr6 107571429 107572120 -81707434 + L1MA4 LINE L1 5582 6294 -6 780 329 52 36 chr6 107572150 107572594 -81706960 - L2 LINE L2 -639 2675 2225 270 316 0 13 chr6 107572597 107572673 -81706881 - L2 LINE L2 -16 3297 3223 824 271 189 12 chr6 107572673 107572803 -81706751 + MLT1E LTR MaLR 1 107 -486 1630 138 125 20 chr6 107572803 107573108 -81706446 - MER1B DNA MER1_type 0 337 1 824 271 189 12 chr6 107573108 107573527 -81706027 + MLT1E LTR MaLR 107 590 -3 510 292 60 9 chr6 107575088 107575304 -81704250 + Tigger6 DNA MER2_type 1068 1294 -303 374 338 68 43 chr6 107575344 107575714 -81703840 + L1PA16 LINE L1 1 379 -7202 9161 237 31 40 chr6 107576458 107577873 -81701681 + L1PA16 LINE L1 2182 3608 -3981 2686 164 53 0 chr6 107577873 107578360 -81701194 - MER75 DNA T2_type 0 514 2 9161 237 31 40 chr6 107578360 107579936 -81699618 + L1PA16 LINE L1 3608 5196 -2393 2078 141 21 24 chr6 107579936 107580312 -81699242 - THE1C LTR MaLR 0 375 1 9161 237 31 40 chr6 107580312 107581746 -81697808 + L1PA16 LINE L1 5196 6641 -948 189 0 0 0 chr6 107581746 107581767 -81697787 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 9161 237 31 40 chr6 107581767 107582226 -81697328 + L1PA16 LINE L1 6641 7015 -574 1981 120 0 4 chr6 107582226 107582493 -81697061 - AluSx SINE Alu -44 268 3 9161 237 31 40 chr6 107582493 107582721 -81696833 + L1PA16 LINE L1 7015 7243 -346 1342 65 8 266 chr6 107582724 107583107 -81696447 + LTR12 LTR ERV1 1 284 -430 226 292 34 0 chr6 107583108 107583197 -81696357 + LTR30 LTR ERV1 552 643 -79 652 144 0 0 chr6 107583199 107583296 -81696258 + LTR12 LTR ERV1 615 711 -3 1776 189 29 0 chr6 107583296 107583640 -81695914 + L1PA16 LINE L1 7242 7595 -9 841 224 53 23 chr6 107583669 107583932 -81695622 + Tigger6 DNA MER2_type 1327 1597 0 25 0 0 0 chr6 107584042 107584067 -81695487 + AT_rich Low_complexity Low_complexity 1 25 0 2102 126 0 3 chr6 107584224 107584518 -81695036 + AluSc SINE Alu 1 293 -16 2223 105 3 10 chr6 107584848 107585161 -81694393 - AluSx SINE Alu -1 311 1 1640 123 20 0 chr6 107585961 107586213 -81693341 - L1PA13 LINE L1 0 6163 5907 24 32 0 0 chr6 107586843 107586874 -81692680 + AT_rich Low_complexity Low_complexity 1 31 0 239 246 62 0 chr6 107587094 107587159 -81692395 - L1ME LINE L1 -451 5670 5602 893 298 113 39 chr6 107587316 107588007 -81691547 + L1M4 LINE L1 74 815 -5727 249 265 93 20 chr6 107590420 107590571 -81688983 + L1ME LINE L1 5718 5879 -242 1137 132 79 0 chr6 107590666 107590855 -81688699 - L1MA3 LINE L1 -15 6290 6087 315 316 37 15 chr6 107591029 107591165 -81688389 - L2 LINE L2 -4 3309 3171 302 346 70 67 chr6 107591333 107591735 -81687819 - L2 LINE L2 -1653 1661 1259 2105 179 41 7 chr6 107593719 107593950 -81685604 - MSTA LTR MaLR 0 428 175 1597 88 0 5 chr6 107593950 107594155 -81685399 - AluY SINE Alu -8 303 100 2105 179 41 7 chr6 107594155 107594337 -81685217 - MSTA LTR MaLR -253 175 1 7939 191 46 11 chr6 107594337 107595933 -81683621 - MSTA-int LTR MaLR 0 1651 1 638 144 10 0 chr6 107595933 107596037 -81683517 - MSTA LTR MaLR 0 428 324 1496 164 8 80 chr6 107596037 107596409 -81683145 - MER4A LTR ERV1 0 664 261 617 108 0 11 chr6 107596415 107596508 -81683046 - MER4A LTR ERV1 -572 92 1 1690 165 48 9 chr6 107596508 107596823 -81682731 - MSTA LTR MaLR -101 327 1 255 133 0 0 chr6 107597635 107597680 -81681874 + (A)n Simple_repeat Simple_repeat 1 45 0 1221 218 29 68 chr6 107598966 107599187 -81680367 + AluJo SINE Alu 1 208 -94 190 0 67 0 chr6 107599187 107599217 -81680337 + (TA)n Simple_repeat Simple_repeat 2 33 0 1221 218 29 68 chr6 107599217 107599303 -81680251 + AluJo SINE Alu 208 296 -6 372 138 0 35 chr6 107599535 107599622 -81679932 + (GGAGA)n Simple_repeat Simple_repeat 5 88 0 3291 85 2 11 chr6 107600765 107601164 -81678390 + MLT2A1 LTR ERVL 1 397 -47 495 45 0 0 chr6 107601164 107601230 -81678324 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 3291 85 2 11 chr6 107601230 107601278 -81678276 + MLT2A1 LTR ERVL 397 444 0 2087 121 3 3 chr6 107602031 107602328 -81677226 + AluSc SINE Alu 1 297 -12 1439 196 43 4 chr6 107602773 107603049 -81676505 - AluJb SINE Alu -25 287 1 2309 68 0 0 chr6 107603432 107603732 -81675822 + AluY SINE Alu 1 300 0 22 0 0 0 chr6 107604292 107604314 -81675240 + AT_rich Low_complexity Low_complexity 1 22 0 213 39 0 0 chr6 107604616 107604642 -81674912 + (T)n Simple_repeat Simple_repeat 1 26 0 216 62 42 21 chr6 107604883 107604931 -81674623 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 192 77 0 0 chr6 107606093 107606119 -81673435 + (TA)n Simple_repeat Simple_repeat 1 26 0 24 32 0 0 chr6 107606736 107606767 -81672787 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr6 107607437 107607461 -81672093 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 195 100 0 0 chr6 107607945 107607975 -81671579 + (T)n Simple_repeat Simple_repeat 1 30 0 43105 31 21 1 chr6 107607977 107614009 -81665545 - L1HS LINE L1 0 6155 1 433 308 71 62 chr6 107614763 107615071 -81664483 - L2 LINE L2 -1 3312 3002 * 440 336 210 36 chr6 107615068 107615597 -81663957 - L2 LINE L2 -429 2885 2265 294 270 36 45 chr6 107615749 107615860 -81663694 + LTR16C LTR ERVL 158 267 -224 2059 174 12 40 chr6 107615913 107616287 -81663267 + MLT2D LTR ERVL 1 363 -51 195 42 0 0 chr6 107616287 107616311 -81663243 + (TC)n Simple_repeat Simple_repeat 1 24 0 2059 174 12 40 chr6 107616311 107616362 -81663192 + MLT2D LTR ERVL 363 414 0 651 290 87 0 chr6 107616426 107616633 -81662921 + ERVL-D LTR ERVL 25 249 -5515 269 226 99 105 chr6 107616635 107616816 -81662738 + MIR SINE MIR 81 260 -2 34 0 0 0 chr6 107616891 107616925 -81662629 + AT_rich Low_complexity Low_complexity 1 34 0 184 240 0 40 chr6 107616989 107617039 -81662515 - L2 LINE L2 -95 3218 3171 511 149 19 0 chr6 107617426 107617533 -81662021 + (TA)n Simple_repeat Simple_repeat 2 110 0 1886 137 0 11 chr6 107617535 107617819 -81661735 - AluSx SINE Alu -31 281 1 29 28 0 0 chr6 107619090 107619126 -81660428 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr6 107619620 107619650 -81659904 + AT_rich Low_complexity Low_complexity 1 30 0 2100 123 0 10 chr6 107619651 107619951 -81659603 - AluSx SINE Alu -15 297 1 1500 183 72 3 chr6 107620182 107620302 -81659252 + AluJb SINE Alu 1 111 -201 198 0 0 0 chr6 107620302 107620324 -81659230 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1500 183 72 3 chr6 107620324 107620493 -81659061 + AluJb SINE Alu 111 310 -2 21 0 0 0 chr6 107620678 107620699 -81658855 + AT_rich Low_complexity Low_complexity 1 21 0 213 355 0 14 chr6 107620870 107621008 -81658546 + (CATATA)n Simple_repeat Simple_repeat 6 141 0 1524 256 63 18 chr6 107621112 107621605 -81657949 + MER34 LTR ERV1 26 540 -2 432 303 14 7 chr6 107622053 107622198 -81657356 - MER69A DNA AcHobo -16 161 16 22 0 0 0 chr6 107622524 107622546 -81657008 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 107625138 107625168 -81654386 + AT_rich Low_complexity Low_complexity 1 30 0 1600 216 39 36 chr6 107625988 107626373 -81653181 - MER88 LTR ERVL 0 464 79 279 79 0 0 chr6 107626929 107626967 -81652587 + (CA)n Simple_repeat Simple_repeat 1 38 0 32 0 0 0 chr6 107627195 107627227 -81652327 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr6 107627669 107627692 -81651862 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 107628527 107628549 -81651005 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 107628929 107628950 -81650604 + AT_rich Low_complexity Low_complexity 1 21 0 204 318 0 0 chr6 107629505 107629568 -81649986 + (CA)n Simple_repeat Simple_repeat 2 64 0 186 43 0 0 chr6 107629611 107629634 -81649920 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 34 24 0 0 chr6 107629915 107629956 -81649598 + AT_rich Low_complexity Low_complexity 1 41 0 267 263 74 42 chr6 107630686 107630781 -81648773 + L2 LINE L2 3171 3268 -4 21 36 0 0 chr6 107630990 107631018 -81648536 + AT_rich Low_complexity Low_complexity 1 28 0 2392 278 91 20 chr6 107631136 107632455 -81647099 + L1MEc LINE L1 1081 2492 -3904 1320 163 4 9 chr6 107632480 107632713 -81646841 - L1PA13 LINE L1 0 6163 5932 3771 145 5 14 chr6 107632714 107633886 -81645668 - L1PA13 LINE L1 -325 5836 4675 * 5569 167 9 30 chr6 107633882 107634000 -81645554 + L1P LINE L1 3592 3711 -2435 198 0 0 0 chr6 107634000 107634022 -81645532 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 5569 167 9 30 chr6 107634022 107635001 -81644553 + L1P LINE L1 3711 4666 -1480 512 256 167 4 chr6 107635023 107635250 -81644304 + L1MEc LINE L1 2710 2973 -3242 760 299 84 46 chr6 107636409 107636777 -81642777 - MLT1I LTR MaLR 0 409 28 735 219 22 128 chr6 107636932 107637129 -81642425 - MIR SINE MIR -13 249 87 288 0 0 0 chr6 107637129 107637161 -81642393 + (TG)n Simple_repeat Simple_repeat 2 33 0 735 219 22 128 chr6 107637161 107637237 -81642317 - MIR SINE MIR -175 87 5 286 61 41 0 chr6 107637559 107637608 -81641946 + (TAAAA)n Simple_repeat Simple_repeat 2 52 0 205 149 43 0 chr6 107638275 107638322 -81641232 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 25 75 0 0 chr6 107638502 107638555 -81640999 + AT_rich Low_complexity Low_complexity 1 53 0 2208 114 0 10 chr6 107639209 107639508 -81640046 - AluSg SINE Alu -14 296 1 230 343 30 20 chr6 107641360 107641459 -81638095 - MIR SINE MIR -148 114 15 1938 117 4 4 chr6 107642114 107642430 -81637124 + AluSc SINE Alu 1 316 0 390 21 0 0 chr6 107642696 107642743 -81636811 + (CA)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chr6 107642848 107642872 -81636682 + AT_rich Low_complexity Low_complexity 1 24 0 197 439 39 0 chr6 107642959 107643089 -81636465 - L2 LINE L2 -4 3268 3134 208 395 16 0 chr6 107643415 107643544 -81636010 - L2 LINE L2 -587 2727 2597 3460 145 82 87 chr6 107643561 107644391 -81635163 + LTR1B LTR ERV1 1 826 0 491 169 0 0 chr6 107644548 107644631 -81634923 + L1MD1 LINE L1 36 118 -6422 227 250 0 0 chr6 107644629 107644681 -81634873 - L1MC/D LINE L1 -2064 5721 5670 * 3525 230 63 15 chr6 107644683 107646718 -81632836 + L1MD1 LINE L1 4503 6636 0 249 350 21 0 chr6 107646858 107646955 -81632599 - LTR16A LTR ERVL -2 448 350 340 238 56 71 chr6 107646975 107647101 -81632453 - LTR16A LTR ERVL -205 245 122 11920 110 25 17 chr6 107648299 107650206 -81629348 + L1PA7 LINE L1 4 1937 -4524 15589 108 15 5 chr6 107650208 107653378 -81626176 + L1PA7 LINE L1 3298 6469 0 24 53 0 0 chr6 107653391 107653429 -81626125 + AT_rich Low_complexity Low_complexity 1 38 0 25 65 0 0 chr6 107654336 107654382 -81625172 + AT_rich Low_complexity Low_complexity 1 46 0 3662 174 31 3 chr6 107654533 107655238 -81624316 - L1MC1 LINE L1 0 6333 5609 342 152 13 89 chr6 107655257 107655286 -81624268 - MLT1A1 LTR MaLR -292 73 43 1014 221 25 113 chr6 107655286 107655685 -81623869 - MLT1A1 LTR MaLR 0 365 2 342 152 13 89 chr6 107655685 107655734 -81623820 - MLT1A1 LTR MaLR -322 43 1 238 381 21 0 chr6 107657777 107657874 -81621680 + L2 LINE L2 2243 2341 -973 1915 223 3 0 chr6 107658006 107658379 -81621175 - MLT1B LTR MaLR -5 385 12 4743 255 78 24 chr6 107708380 107709538 -81570016 - L1MCa LINE L1 -1872 4692 3599 180 0 0 0 chr6 107709538 107709558 -81569996 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4743 255 78 24 chr6 107709558 107711309 -81568245 - L1MCa LINE L1 -2965 3599 1467 306 0 0 0 chr6 107711309 107711343 -81568211 + (TG)n Simple_repeat Simple_repeat 2 35 0 4743 255 78 24 chr6 107711343 107711889 -81567665 - L1MCa LINE L1 -5097 1467 952 273 261 43 0 chr6 107711955 107712070 -81567484 - L1MCa LINE L1 -4423 2141 2022 261 139 0 0 chr6 107712235 107712278 -81567276 + (CA)n Simple_repeat Simple_repeat 2 44 0 1021 277 44 117 chr6 107712288 107712923 -81566631 - L1MCa LINE L1 -5147 898 310 567 160 34 50 chr6 107712931 107713050 -81566504 - MER70A LTR ERVL 0 472 356 * 820 251 22 6 chr6 107713037 107713216 -81566338 - MER70A LTR ERVL -64 408 227 1479 267 127 24 chr6 107713250 107714023 -81565531 - L1MCa LINE L1 -4653 1743 851 1885 103 0 11 chr6 107714023 107714304 -81565250 - L1PB1 LINE L1 0 6151 5874 1479 267 127 24 chr6 107714304 107714489 -81565065 - L1MCa LINE L1 -5545 851 686 1945 146 48 25 chr6 107714506 107714862 -81564692 + THE1B LTR MaLR 1 364 0 10010 104 30 1 chr6 107714862 107716398 -81563156 + THE1B-int LTR MaLR 1 1580 0 1831 169 51 28 chr6 107716398 107716754 -81562800 + THE1B LTR MaLR 1 364 0 878 317 21 6 chr6 107716759 107717087 -81562467 - L1MCa LINE L1 -5719 677 345 358 281 67 47 chr6 107717122 107717464 -81562090 - L1MCa LINE L1 -5007 1934 1586 228 210 81 0 chr6 107717494 107717556 -81561998 - L1MCa LINE L1 -4954 1469 1403 26 30 0 0 chr6 107717556 107717589 -81561965 + AT_rich Low_complexity Low_complexity 1 33 0 603 181 147 11 chr6 107717663 107717840 -81561714 + MER3 DNA MER1_type 2 202 -7 2863 9 0 0 chr6 107718353 107718671 -81560883 + AluYb8 SINE Alu 1 318 0 234 235 103 0 chr6 107718732 107718800 -81560754 + MIR SINE MIR 121 195 -67 1896 103 66 0 chr6 107718900 107719171 -81560383 + AluSg SINE Alu 1 289 -21 393 22 0 0 chr6 107720057 107720103 -81559451 + (CA)n Simple_repeat Simple_repeat 1 46 0 225 314 33 25 chr6 107721173 107721294 -81558260 + MIR SINE MIR 138 259 -3 370 343 0 0 chr6 107721936 107722070 -81557484 - MLT1I LTR MaLR -274 135 2 31 68 0 0 chr6 107722262 107722321 -81557233 + AT_rich Low_complexity Low_complexity 1 59 0 490 213 55 92 chr6 107722541 107722705 -81556849 + MER20 DNA MER1_type 1 158 -61 487 260 138 17 chr6 107722899 107723080 -81556474 - LTR33 LTR ERVL -304 217 15 635 287 17 11 chr6 107724045 107724226 -81555328 + MER5A DNA MER1_type 7 188 -1 432 293 30 8 chr6 107725002 107725135 -81554419 + MIR SINE MIR 92 227 -35 203 310 17 0 chr6 107726149 107726207 -81553347 + L2 LINE L2 3191 3249 -23 216 135 0 0 chr6 107727534 107727571 -81551983 + (TA)n Simple_repeat Simple_repeat 1 37 0 2367 133 25 5 chr6 107727617 107727985 -81551569 + THE1C LTR MaLR 1 375 0 914 204 87 52 chr6 107728361 107728650 -81550904 - MER33 DNA MER1_type -17 307 9 837 117 0 0 chr6 107728932 107729052 -81550502 - MER57A LTR ERV1 -283 120 1 30 27 0 0 chr6 107729187 107729224 -81550330 + AT_rich Low_complexity Low_complexity 1 37 0 1801 177 0 3 chr6 107730410 107730710 -81548844 - AluSx SINE Alu -13 299 1 24 0 0 0 chr6 107731420 107731444 -81548110 + AT_rich Low_complexity Low_complexity 1 24 0 408 320 93 8 chr6 107731453 107731712 -81547842 - HAL1 LINE L1 -820 1687 1407 589 285 57 114 chr6 107731798 107732412 -81547142 + MLT1K LTR MaLR 5 583 -5 248 220 17 17 chr6 107732623 107732682 -81546872 - HAL1 LINE L1 -1639 868 810 405 39 0 0 chr6 107732684 107732735 -81546819 + (TG)n Simple_repeat Simple_repeat 2 52 0 2323 49 3 30 chr6 107732736 107733041 -81546513 - AluY SINE Alu -14 297 1 765 250 53 10 chr6 107734153 107734361 -81545193 - L1PB4 LINE L1 -3 6153 5937 331 204 84 33 chr6 107734353 107734484 -81545070 - L1PB4 LINE L1 -1030 5116 4977 * 1926 91 12 0 chr6 107734488 107734742 -81544812 - AluSg SINE Alu -22 288 32 251 273 0 0 chr6 107735015 107735070 -81544484 - L2 LINE L2 -1 3271 3217 335 163 78 0 chr6 107735166 107735332 -81544222 + (TA)n Simple_repeat Simple_repeat 1 179 0 1336 252 57 12 chr6 107735544 107736060 -81543494 - MER76 LTR ERV -12 676 74 310 138 231 0 chr6 107736060 107736125 -81543429 - MADE1 DNA Mariner 0 80 1 1336 252 57 12 chr6 107736125 107736203 -81543351 - MER76 LTR ERV -614 74 1 349 291 83 12 chr6 107736450 107736691 -81542863 + L1ME LINE L1 2370 2627 -3519 * 954 283 124 59 chr6 107736685 107738289 -81541265 + L1ME LINE L1 3720 5426 -736 308 296 113 45 chr6 107738295 107738650 -81540904 + L1ME4a LINE L1 5718 6096 -25 303 28 0 0 chr6 107738796 107738832 -81540722 + (CA)n Simple_repeat Simple_repeat 2 37 0 1669 179 0 45 chr6 107739261 107739573 -81539981 - AluJo SINE Alu -12 300 3 557 329 72 13 chr6 107739932 107740169 -81539385 + MIR SINE MIR 12 262 0 22 0 0 0 chr6 107741014 107741036 -81538518 + AT_rich Low_complexity Low_complexity 1 22 0 1550 206 3 3 chr6 107741126 107741437 -81538117 + AluJb SINE Alu 1 311 -1 2267 116 44 6 chr6 107741831 107742192 -81537362 + THE1C LTR MaLR 1 375 0 9212 129 41 41 chr6 107742193 107743772 -81535782 + THE1C-int LTR MaLR 2 1580 0 2271 155 5 5 chr6 107743772 107744147 -81535407 + THE1C LTR MaLR 1 375 0 7355 43 0 0 chr6 107745311 107746409 -81533145 - L1PA5 LINE L1 0 6154 5056 22 0 0 0 chr6 107747296 107747318 -81532236 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chr6 107747345 107747370 -81532184 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 242 280 32 21 chr6 107747680 107747773 -81531781 - L1MC/D LINE L1 -2413 5582 5489 32 67 0 0 chr6 107748279 107748339 -81531215 + AT_rich Low_complexity Low_complexity 1 60 0 310 365 80 0 chr6 107748395 107748595 -81530959 + L1ME LINE L1 5514 5729 -392 34 24 0 0 chr6 107748661 107748702 -81530852 + AT_rich Low_complexity Low_complexity 1 41 0 24 91 0 0 chr6 107749097 107749163 -81530391 + AT_rich Low_complexity Low_complexity 1 66 0 241 79 63 16 chr6 107751753 107751816 -81527738 + (TA)n Simple_repeat Simple_repeat 1 66 0 279 0 0 0 chr6 107751820 107751851 -81527703 + (TG)n Simple_repeat Simple_repeat 2 32 0 1422 181 43 25 chr6 107751865 107752142 -81527412 - AluJb SINE Alu -30 282 1 223 303 101 56 chr6 107752466 107752644 -81526910 - MIR3 SINE MIR -17 191 6 544 219 0 34 chr6 107754840 107754959 -81524595 + L2 LINE L2 3199 3313 0 2215 137 6 11 chr6 107754966 107755323 -81524231 - THE1A LTR MaLR 0 355 1 1103 84 7 0 chr6 107755323 107755477 -81524077 - THE1A-int LTR MaLR 0 1580 1426 305 225 35 6 chr6 107756264 107756437 -81523117 + (TA)n Simple_repeat Simple_repeat 1 178 0 569 291 86 16 chr6 107756441 107756685 -81522869 + L2 LINE L2 2241 2501 -813 872 209 42 4 chr6 107757772 107758011 -81521543 + Charlie5 DNA MER1_type 2332 2579 -33 334 324 29 7 chr6 107758914 107759050 -81520504 - L2 LINE L2 -440 2874 2736 361 190 103 9 chr6 107759094 107759210 -81520344 - L1MDa LINE L1 -4500 2040 1914 4216 270 62 33 chr6 107759234 107760787 -81518767 - L1MDa LINE L1 -4871 1669 72 3272 67 2 7 chr6 107760787 107761237 -81518317 + LTR7 LTR ERV1 1 448 -2 19024 87 50 18 chr6 107761239 107764140 -81515414 + HERVH LTR ERV1 1 2995 -4718 917 133 7 0 chr6 107764119 107764269 -81515285 + HERVH LTR ERV1 3140 3290 -4423 * 3297 116 6 2 chr6 107764259 107764759 -81514795 + HERVH LTR ERV1 3492 3993 -3720 4278 148 0 3 chr6 107764761 107765425 -81514129 + HERVH LTR ERV1 4488 5149 -2564 1314 122 18 44 chr6 107765422 107765651 -81513903 + HERVH LTR ERV1 5597 5819 -1894 * 2452 89 45 13 chr6 107765649 107766029 -81513525 + HERVH LTR ERV1 7322 7713 0 3187 73 2 7 chr6 107766029 107766479 -81513075 + LTR7 LTR ERV1 1 448 -2 227 114 23 0 chr6 107766580 107766624 -81512930 + (CA)n Simple_repeat Simple_repeat 2 46 0 470 329 60 12 chr6 107767157 107767409 -81512145 - LTR16C LTR ERVL -65 426 163 351 0 0 0 chr6 107767763 107767802 -81511752 + (CA)n Simple_repeat Simple_repeat 2 40 0 26 30 0 0 chr6 107770137 107770170 -81509384 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr6 107770757 107770785 -81508769 + AT_rich Low_complexity Low_complexity 1 28 0 1856 188 31 6 chr6 107770790 107771146 -81508408 - MLT1A1 LTR MaLR 0 365 1 294 312 25 6 chr6 107771151 107771308 -81508246 - L1ME LINE L1 -472 5649 5490 230 340 49 28 chr6 107772554 107772698 -81506856 - MIR SINE MIR -16 246 100 189 0 0 0 chr6 107772698 107772719 -81506835 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 1373 212 92 22 chr6 107773082 107773404 -81506150 + MLT2C1 LTR ERVL 1 354 -43 195 114 0 0 chr6 107773404 107773439 -81506115 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 1373 212 92 22 chr6 107773439 107773484 -81506070 + MLT2C1 LTR ERVL 354 394 -3 288 297 0 0 chr6 107773664 107773738 -81505816 + (TG)n Simple_repeat Simple_repeat 1 74 0 454 301 94 66 chr6 107774432 107774751 -81504803 - LTR33 LTR ERVL -171 350 23 30 0 0 0 chr6 107775338 107775368 -81504186 + AT_rich Low_complexity Low_complexity 1 30 0 330 225 62 0 chr6 107775459 107775539 -81504015 + L2 LINE L2 2259 2343 -971 2205 113 0 3 chr6 107775544 107775845 -81503709 + AluSx SINE Alu 1 300 -12 1278 198 146 34 chr6 107775851 107776261 -81503293 + MSTB2 LTR MaLR 1 456 -1 506 361 136 15 chr6 107776305 107776842 -81502712 + L2 LINE L2 2376 2977 -337 5015 156 14 12 chr6 107777579 107778458 -81501096 - L1PA15 LINE L1 0 6165 5286 801 254 0 0 chr6 107778467 107778668 -81500886 - L1PA15 LINE L1 -1163 4983 4783 611 188 58 7 chr6 107778715 107778869 -81500685 + L1MA4 LINE L1 4623 4784 -1362 5310 214 51 46 chr6 107779516 107780044 -81499510 - L1 LINE L1 -822 5324 4800 1282 137 83 0 chr6 107780044 107780235 -81499319 - AluSq SINE Alu 0 329 115 243 0 0 0 chr6 107780235 107780262 -81499292 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1282 137 83 0 chr6 107780262 107780321 -81499233 - AluSq SINE Alu -214 115 62 5310 214 51 46 chr6 107780321 107781378 -81498176 - L1 LINE L1 -1346 4800 3675 237 108 0 0 chr6 107781378 107781415 -81498139 + (TG)n Simple_repeat Simple_repeat 2 38 0 5310 214 51 46 chr6 107781415 107781557 -81497997 - L1 LINE L1 -2471 3675 3535 4741 196 7 10 chr6 107781551 107781575 -81497979 + L1MA4 LINE L1 5338 5361 -939 * 2025 170 5 24 chr6 107781575 107781957 -81497597 + THE1C LTR MaLR 1 375 0 8471 142 42 48 chr6 107781957 107783547 -81496007 + THE1C-int LTR MaLR 1 1580 0 2369 143 11 0 chr6 107783547 107783918 -81495636 + THE1C LTR MaLR 1 375 0 4741 196 7 10 chr6 107783918 107784850 -81494704 + L1MA4 LINE L1 5358 6293 -7 316 307 68 31 chr6 107784988 107785151 -81494403 - L2 LINE L2 -31 3282 3114 247 250 0 0 chr6 107785517 107785569 -81493985 + CT-rich Low_complexity Low_complexity 1 52 0 1728 119 38 38 chr6 107785579 107785843 -81493711 + MER4A LTR ERV1 1 335 -329 2017 142 0 0 chr6 107785843 107786138 -81493416 + AluSg SINE Alu 1 295 -15 1728 119 38 38 chr6 107786138 107786326 -81493228 + MER4A LTR ERV1 335 521 -143 * 2145 131 3 0 chr6 107786323 107786636 -81492918 + MER4A LTR ERV1 351 664 0 501 17 0 0 chr6 107787990 107788048 -81491506 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 432 282 78 35 chr6 107788966 107789108 -81490446 + L3 LINE CR1 1429 1576 -1 431 280 41 118 chr6 107789455 107789894 -81489660 + L1ME LINE L1 12 416 -5654 510 308 41 37 chr6 107790186 107790677 -81488877 + L1ME LINE L1 532 1024 -5046 557 94 12 0 chr6 107790837 107790922 -81488632 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 254 311 15 15 chr6 107791292 107791427 -81488127 + L1MEc LINE L1 1235 1369 -5456 362 284 160 0 chr6 107791438 107791607 -81487947 + L1MEc LINE L1 1341 1536 -5098 351 319 107 62 chr6 107791662 107792260 -81487294 + HAL1 LINE L1 1095 1719 -788 593 305 65 47 chr6 107792323 107792752 -81486802 - L1 LINE L1 -2958 3188 2752 352 329 123 9 chr6 107792779 107792998 -81486556 + MIR SINE MIR 5 248 -14 1197 304 100 6 chr6 107793424 107793894 -81485660 + MLT1F LTR MaLR 29 542 0 320 286 85 30 chr6 107793903 107794102 -81485452 + L1M4 LINE L1 3775 3984 -2162 528 301 39 5 chr6 107794232 107794435 -81485119 + L1MB7 LINE L1 5966 6175 -9 492 321 112 34 chr6 107794464 107794965 -81484589 + L1M4 LINE L1 4119 4658 -1488 23 33 0 0 chr6 107795451 107795481 -81484073 + AT_rich Low_complexity Low_complexity 1 30 0 366 42 0 0 chr6 107796258 107796306 -81483248 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 279 284 74 58 chr6 107796750 107797101 -81482453 + L1MEc LINE L1 1371 1703 -4839 1388 205 120 19 chr6 107797504 107797928 -81481626 - MLT1C LTR MaLR 0 467 1 28 0 0 0 chr6 107799559 107799587 -81479967 + AT_rich Low_complexity Low_complexity 1 28 0 368 188 17 120 chr6 107800775 107800892 -81478662 + MER31A LTR ERV1 353 457 -28 21 0 0 0 chr6 107801024 107801045 -81478509 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr6 107801328 107801355 -81478199 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 237 65 0 0 chr6 107801399 107801430 -81478124 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 24888 149 17 24 chr6 107802711 107809140 -81470414 - L1PA8A LINE L1 0 6446 3 233 258 16 16 chr6 107809586 107809648 -81469906 + L2 LINE L2 3210 3271 -1 337 259 38 8 chr6 107810056 107810125 -81469429 - L1MA10 LINE L1 -8 6326 6258 1703 198 86 90 chr6 107810125 107810791 -81468763 - L1ME1 LINE L1 -73 6091 5406 964 221 37 8 chr6 107810854 107811098 -81468456 - L1MB7 LINE L1 -14 6170 5920 248 273 0 0 chr6 107811106 107811161 -81468393 + AluJb SINE Alu 1 55 -248 1993 137 3 0 chr6 107811161 107811460 -81468094 + AluSx SINE Alu 1 300 -12 1515 149 8 0 chr6 107811466 107811701 -81467853 + AluJb SINE Alu 51 287 -25 3040 240 28 8 chr6 107811711 107813148 -81466406 - L1MB7 LINE L1 -259 5925 4457 1701 268 139 52 chr6 107813165 107813423 -81466131 - L1MCa LINE L1 -4997 1429 1195 1826 166 14 0 chr6 107813423 107813718 -81465836 - AluSx SINE Alu -13 299 1 1701 268 139 52 chr6 107813718 107813977 -81465577 - L1MCa LINE L1 -5231 1195 960 1210 197 77 79 chr6 107813977 107814408 -81465146 - MSTB1 LTR MaLR 0 432 3 1701 268 139 52 chr6 107814408 107815186 -81464368 - L1MCa LINE L1 -5466 960 20 232 365 19 0 chr6 107815440 107815544 -81464010 + L2 LINE L2 2191 2296 -1018 285 343 54 12 chr6 107816458 107816624 -81462930 - MIR SINE MIR -70 192 20 425 266 47 0 chr6 107816739 107816867 -81462687 + MER94 DNA DNA 1 134 0 791 220 39 28 chr6 107818969 107819151 -81460403 + Tigger3(Golem) DNA MER2_type 21 204 -2825 * 3406 160 30 28 chr6 107819140 107819815 -81459739 + Tigger3(Golem) DNA MER2_type 2353 3028 -1 1593 290 84 22 chr6 107821643 107822444 -81457110 - L1ME3A LINE L1 -3 6167 5318 200 59 29 0 chr6 107822741 107822775 -81456779 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr6 107823591 107823614 -81455940 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 107823666 107823688 -81455866 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 107825584 107825605 -81453949 + AT_rich Low_complexity Low_complexity 1 21 0 35 0 0 0 chr6 107825859 107825894 -81453660 + AT_rich Low_complexity Low_complexity 1 35 0 207 256 0 0 chr6 107826325 107826368 -81453186 + (CAG)n Simple_repeat Simple_repeat 2 44 0 484 347 34 15 chr6 107826643 107826969 -81452585 + L1MEc LINE L1 91 422 -5974 1618 101 93 0 chr6 107826987 107827292 -81452262 + AluSq SINE Alu 3 331 0 987 329 53 32 chr6 107827693 107828680 -81450874 + L1MEc LINE L1 635 1641 -4755 290 325 84 42 chr6 107829344 107829535 -81450019 + L1MCc LINE L1 819 1017 -5406 29 0 0 0 chr6 107829601 107829630 -81449924 + AT_rich Low_complexity Low_complexity 1 29 0 3205 30 23 0 chr6 107829630 107830023 -81449531 - L1PA4 LINE L1 -11 6144 5743 2713 54 0 0 chr6 107830023 107830358 -81449196 + L1PA4 LINE L1 5403 5737 -417 582 228 11 63 chr6 107830367 107830556 -81448998 + L1MCc LINE L1 1106 1284 -5139 334 270 58 83 chr6 107830573 107830814 -81448740 + L1MCc LINE L1 1842 2076 -4865 1284 223 65 39 chr6 107831047 107831433 -81448121 - MSTD LTR MaLR 0 396 1 1882 288 104 30 chr6 107832380 107833395 -81446159 + L1ME1 LINE L1 51 1141 -5255 430 36 24 48 chr6 107833443 107833527 -81446027 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 3233 259 114 8 chr6 107833533 107834852 -81444702 + L1ME1 LINE L1 3851 5310 -905 732 311 52 18 chr6 107834886 107835272 -81444282 + L1ME1 LINE L1 5775 6173 -62 239 336 45 0 chr6 107835180 107835314 -81444240 + L1MA10 LINE L1 6239 6378 -25 * 262 324 0 0 chr6 107835339 107835413 -81444141 + HAL1 LINE L1 7 80 -2427 259 279 15 83 chr6 107836061 107836387 -81443167 + HAL1 LINE L1 988 1291 -1216 579 285 164 18 chr6 107836479 107836760 -81442794 + HAL1 LINE L1 1453 1774 -733 370 372 59 16 chr6 107836766 107837070 -81442484 + HAL1 LINE L1 1810 2126 -381 2036 246 69 30 chr6 107837201 107837869 -81441685 + HsTC2a DNA Tc2 45 738 -6 216 175 0 0 chr6 107837972 107838012 -81441542 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 30 45 0 0 chr6 107838315 107838359 -81441195 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr6 107839884 107839912 -81439642 + AT_rich Low_complexity Low_complexity 1 28 0 6230 168 29 64 chr6 107840319 107840774 -81438780 + L1MA6 LINE L1 3894 4363 -1937 3838 119 3 2 chr6 107840774 107841361 -81438193 - L1PB1 LINE L1 0 6151 5564 1258 225 69 0 chr6 107841362 107841638 -81437916 - AluJo SINE Alu -7 295 1 6230 168 29 64 chr6 107841638 107843673 -81435881 + L1MA6 LINE L1 4362 6290 -10 234 0 0 0 chr6 107844045 107844071 -81435483 + (GA)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr6 107845309 107845338 -81434216 + AT_rich Low_complexity Low_complexity 1 29 0 207 100 0 0 chr6 107845387 107845417 -81434137 + (TA)n Simple_repeat Simple_repeat 1 30 0 356 206 0 52 chr6 107845428 107845525 -81434029 + L1MC4 LINE L1 6614 6705 -1337 2559 40 0 0 chr6 107845694 107845993 -81433561 - AluY SINE Alu -9 302 4 24 0 0 0 chr6 107846781 107846805 -81432749 + AT_rich Low_complexity Low_complexity 1 24 0 1784 205 40 0 chr6 107846893 107847240 -81432314 + MLT2D LTR ERVL 1 361 -53 192 40 0 0 chr6 107847274 107847299 -81432255 + (TC)n Simple_repeat Simple_repeat 2 26 0 1178 296 39 21 chr6 107848098 107848487 -81431067 - MLT1I LTR MaLR -13 396 1 1812 165 15 26 chr6 107848568 107848907 -81430647 - MER1B DNA MER1_type 0 337 3 345 354 46 21 chr6 107848944 107849181 -81430373 - MIR SINE MIR -17 245 3 2148 114 10 0 chr6 107849415 107849712 -81429842 + AluSq SINE Alu 1 300 -13 251 319 21 0 chr6 107849750 107849844 -81429710 + MIR SINE MIR 74 169 -93 312 276 52 60 chr6 107849901 107850035 -81429519 - MIR SINE MIR -30 232 100 269 259 250 0 chr6 107850564 107850672 -81428882 - L2 LINE L2 0 3313 3179 231 389 89 5 chr6 107850722 107850925 -81428629 - L2 LINE L2 -286 3027 2808 3889 129 33 10 chr6 107852234 107852848 -81426706 + MER41B LTR ERV1 1 628 -7 23 0 0 0 chr6 107853049 107853072 -81426482 + AT_rich Low_complexity Low_complexity 1 23 0 218 200 22 0 chr6 107853959 107854004 -81425550 + (TG)n Simple_repeat Simple_repeat 1 46 0 8089 176 47 10 chr6 107854183 107855669 -81423885 + L1 LINE L1 23 1563 -6002 8409 196 21 4 chr6 107855709 107857491 -81422063 + L1 LINE L1 4584 6395 -1170 26 64 0 0 chr6 107858065 107858112 -81421442 + AT_rich Low_complexity Low_complexity 1 47 0 2276 116 0 0 chr6 107858381 107858691 -81420863 + AluSg SINE Alu 1 310 0 34 55 0 0 chr6 107858756 107858811 -81420743 + AT_rich Low_complexity Low_complexity 1 55 0 246 121 0 0 chr6 107859215 107859248 -81420306 - U2 snRNA snRNA -155 33 1 281 294 40 32 chr6 107860144 107860270 -81419284 + MER89-int LTR ERV1 4527 4653 -2148 451 202 111 10 chr6 107860273 107860372 -81419182 - MLT1B LTR MaLR -280 110 2 23 0 0 0 chr6 107860992 107861015 -81418539 + AT_rich Low_complexity Low_complexity 1 23 0 182 171 24 0 chr6 107861015 107861056 -81418498 + GA-rich Low_complexity Low_complexity 1 42 0 420 255 20 39 chr6 107861987 107862140 -81417414 - L2 LINE L2 -6 3307 3158 27 29 0 0 chr6 107862236 107862270 -81417284 + AT_rich Low_complexity Low_complexity 1 34 0 3654 219 38 64 chr6 107862273 107863481 -81416073 - L1MD2 LINE L1 -18 6618 5444 1709 152 194 8 chr6 107863523 107863884 -81415670 - MSTA LTR MaLR 0 428 1 832 206 12 193 chr6 107863894 107864060 -81415494 - L1MD2 LINE L1 -1917 4623 4429 2278 100 0 0 chr6 107864060 107864360 -81415194 - AluY SINE Alu -11 300 1 832 206 12 193 chr6 107864360 107864662 -81414892 - L1MD2 LINE L1 -2111 4429 4281 1716 142 3 69 chr6 107864662 107865007 -81414547 + AluSx SINE Alu 1 312 0 832 206 12 193 chr6 107865007 107865129 -81414425 - L1MD2 LINE L1 -2259 4281 4139 1451 210 38 0 chr6 107865136 107865427 -81414127 + MER2 DNA MER2_type 44 345 0 3507 245 82 82 chr6 107865429 107866923 -81412631 - L1MD2 LINE L1 -2401 4139 2646 2320 96 48 31 chr6 107866923 107867279 -81412275 + THE1B LTR MaLR 3 364 0 3507 245 82 82 chr6 107867279 107869007 -81410547 - L1MD2 LINE L1 -3894 2646 908 2154 268 86 64 chr6 107869742 107870599 -81408955 - L1MD2 LINE L1 -5633 907 32 24 53 0 0 chr6 107870621 107870659 -81408895 + AT_rich Low_complexity Low_complexity 1 38 0 226 323 30 0 chr6 107871268 107871367 -81408187 + MIR SINE MIR 100 201 -61 1991 118 4 0 chr6 107871386 107871657 -81407897 + AluSp SINE Alu 4 275 -38 219 69 0 0 chr6 107871687 107871716 -81407838 + (A)n Simple_repeat Simple_repeat 1 29 0 909 199 76 69 chr6 107873714 107873976 -81405578 - MSTB LTR MaLR -2 424 161 1105 228 9 0 chr6 107874818 107875050 -81404504 - MER46A DNA MER2_type 0 236 3 280 316 140 35 chr6 107877119 107877290 -81402264 + MIR SINE MIR 31 219 -43 673 253 7 0 chr6 107878603 107878749 -81400805 - MER58B DNA MER1_type 0 341 195 227 200 0 0 chr6 107878744 107878784 -81400770 - MER58B DNA MER1_type -301 40 1 * 594 244 144 61 chr6 107879030 107879473 -81400081 + L1MC4 LINE L1 7465 7944 -98 22 35 0 0 chr6 107880541 107880570 -81398984 + AT_rich Low_complexity Low_complexity 1 29 0 241 221 0 70 chr6 107881705 107881791 -81397763 + L1MC4 LINE L1 6617 6696 -1346 * 354 224 13 13 chr6 107881789 107881865 -81397689 - L1PB4 LINE L1 -12 6144 6069 1314 179 0 0 chr6 107882073 107882285 -81397269 - AluJo SINE Alu -83 229 18 6556 82 3 0 chr6 107883094 107884436 -81395118 - L1PA7 LINE L1 -3 6151 4800 1994 114 0 0 chr6 107884436 107884726 -81394828 + L1PA7 LINE L1 4490 4779 -1367 217 278 135 48 chr6 107885473 107885599 -81393955 - L2 LINE L2 -15 3257 3121 187 324 108 36 chr6 107886078 107886189 -81393365 - L2 LINE L2 0 3272 3154 5070 277 24 15 chr6 107886352 107887793 -81391761 + L1MA7 LINE L1 1416 2614 -4872 1288 203 111 16 chr6 107887793 107888108 -81391446 - MER2 DNA MER2_type 0 345 1 1409 291 31 19 chr6 107888110 107888254 -81391300 + L1M4c LINE L1 1029 1170 -5214 1743 93 74 19 chr6 107888254 107888512 -81391042 + AluSg SINE Alu 30 301 -9 1409 291 31 19 chr6 107888512 107888955 -81390599 + L1M4c LINE L1 1170 1623 -4761 5794 231 22 5 chr6 107889006 107890824 -81388730 + L1 LINE L1 5 2536 -5029 4084 165 42 47 chr6 107890820 107891517 -81388037 + L1 LINE L1 2801 3500 -4065 * 365 0 22 0 chr6 107891517 107891562 -81387992 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 4084 165 42 47 chr6 107891562 107892308 -81387246 + L1 LINE L1 3500 4241 -3324 3050 179 83 5 chr6 107892286 107892928 -81386626 + L1 LINE L1 5650 6341 -1224 * 1189 218 72 0 chr6 107892921 107893214 -81386340 + L1MA3 LINE L1 5992 6305 0 * 2498 244 36 29 chr6 107893229 107894474 -81385080 + L1MA7 LINE L1 2900 4152 -3413 * 4392 194 21 33 chr6 107894473 107894837 -81384717 + L1MA7 LINE L1 5152 5519 -2046 2106 44 4 0 chr6 107894837 107895088 -81384466 + AluY SINE Alu 57 308 -3 4392 194 21 33 chr6 107895088 107895800 -81383754 + L1MA7 LINE L1 5519 6215 -1350 1516 83 5 18 chr6 107895796 107896102 -81383452 - L1PA6 LINE L1 -114 6040 5826 815 48 67 0 chr6 107896006 107896095 -81383459 + L1PA6 LINE L1 6031 6142 -12 289 77 46 62 chr6 107896095 107896140 -81383414 + L1PA2 LINE L1 6109 6154 -1 4614 191 20 22 chr6 107896183 107897627 -81381927 + L1MA7 LINE L1 6226 7664 -46 232 233 23 23 chr6 107897919 107898005 -81381549 + (CATATA)n Simple_repeat Simple_repeat 2 87 0 454 247 19 76 chr6 107898118 107898276 -81381278 - MIR SINE MIR -57 205 57 24 0 0 0 chr6 107899715 107899739 -81379815 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 107900215 107900236 -81379318 + AT_rich Low_complexity Low_complexity 1 21 0 237 333 179 6 chr6 107900308 107900476 -81379078 + MIR SINE MIR 35 231 -31 935 213 84 0 chr6 107901982 107902207 -81377347 + MER58 DNA MER1_type 38 281 -2139 464 364 50 19 chr6 107904243 107904606 -81374948 - L1ME3A LINE L1 -206 5964 5591 237 318 87 17 chr6 107904609 107904782 -81374772 - L1ME3A LINE L1 -606 5558 5374 827 182 12 18 chr6 107905565 107905730 -81373824 - FRAM SINE Alu 0 40 1 26 0 0 0 chr6 107906344 107906370 -81373184 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr6 107906539 107906563 -81372991 + AT_rich Low_complexity Low_complexity 1 24 0 33 25 0 0 chr6 107906645 107906685 -81372869 + AT_rich Low_complexity Low_complexity 1 40 0 4660 178 22 54 chr6 107906999 107908388 -81371166 - L1PA16 LINE L1 0 6166 4842 1725 128 22 4 chr6 107908407 107908680 -81370874 + AluSx SINE Alu 13 290 -22 464 48 16 0 chr6 107908684 107908747 -81370807 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 419 228 33 0 chr6 107908747 107908839 -81370715 + FRAM SINE Alu 7 101 -65 21 36 0 0 chr6 107909660 107909688 -81369866 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr6 107910008 107910048 -81369506 + AT_rich Low_complexity Low_complexity 1 40 0 32 43 0 0 chr6 107910140 107910186 -81369368 + AT_rich Low_complexity Low_complexity 1 46 0 189 0 0 0 chr6 107911205 107911226 -81368328 + (CA)n Simple_repeat Simple_repeat 1 21 0 226 345 115 46 chr6 107911596 107911900 -81367654 + L2 LINE L2 2948 3272 0 6460 154 32 16 chr6 107912113 107913324 -81366230 - Tigger3b DNA MER2_type 0 1231 2 316 181 24 0 chr6 107913727 107913810 -81365744 + (TA)n Simple_repeat Simple_repeat 1 85 0 427 294 84 0 chr6 107913957 107914100 -81365454 + MIR SINE MIR 104 258 -4 318 117 91 26 chr6 107914653 107914730 -81364824 - Tigger3(Golem) DNA MER2_type -2745 284 203 21 36 0 0 chr6 107915663 107915691 -81363863 + AT_rich Low_complexity Low_complexity 1 28 0 255 298 298 0 chr6 107916020 107916151 -81363403 + MIR3 SINE MIR 32 201 -7 3383 124 18 16 chr6 107916527 107917091 -81362463 - L1PA13 LINE L1 0 6163 5599 385 276 94 0 chr6 107918626 107918753 -81360801 + MER103 DNA DNA 23 161 -5 1685 188 5 60 chr6 107918919 107919287 -81360267 - MER7A DNA MER2_type 0 346 1 180 0 0 0 chr6 107920126 107920146 -81359408 + (TAA)n Simple_repeat Simple_repeat 2 21 0 669 193 76 12 chr6 107920523 107920826 -81358728 + MLT1A2 LTR MaLR 1 365 0 2325 127 36 5 chr6 107924052 107924463 -81355091 - L1MA2 LINE L1 0 6304 5881 33 0 0 0 chr6 107924510 107924543 -81355011 + AT_rich Low_complexity Low_complexity 1 33 0 189 269 215 39 chr6 107924829 107924959 -81354595 + MIR SINE MIR 29 181 -81 21 71 0 0 chr6 107924970 107925012 -81354542 + AT_rich Low_complexity Low_complexity 1 42 0 27 62 0 0 chr6 107925967 107926015 -81353539 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr6 107926345 107926366 -81353188 + AT_rich Low_complexity Low_complexity 1 21 0 1764 188 76 3 chr6 107927322 107927652 -81351902 + MLT1A1 LTR MaLR 1 354 -11 704 152 24 0 chr6 107927880 107928005 -81351549 - AluSg/x SINE Alu -9 301 174 180 77 0 0 chr6 107928470 107928496 -81351058 + (T)n Simple_repeat Simple_repeat 1 26 0 328 286 164 29 chr6 107929126 107929297 -81350257 - MIR SINE MIR -24 238 45 22 35 0 0 chr6 107929647 107929676 -81349878 + AT_rich Low_complexity Low_complexity 1 29 0 35 0 0 0 chr6 107929851 107929886 -81349668 + AT_rich Low_complexity Low_complexity 1 35 0 1974 141 0 3 chr6 107929987 107930278 -81349276 - AluSx SINE Alu -20 292 3 181 254 51 0 chr6 107930424 107930483 -81349071 + MIR SINE MIR 129 190 -72 27 49 0 0 chr6 107930869 107930910 -81348644 + AT_rich Low_complexity Low_complexity 1 41 0 240 374 47 11 chr6 107931503 107931693 -81347861 + MIR SINE MIR 48 244 -18 25 0 0 0 chr6 107931720 107931745 -81347809 + AT_rich Low_complexity Low_complexity 1 25 0 1240 179 289 77 chr6 107931959 107932416 -81347138 - MLT2B3 LTR ERVL 0 554 1 21 0 0 0 chr6 107932660 107932681 -81346873 + AT_rich Low_complexity Low_complexity 1 21 0 36 23 0 0 chr6 107932867 107932910 -81346644 + AT_rich Low_complexity Low_complexity 1 43 0 2323 114 6 3 chr6 107933018 107933351 -81346203 - THE1C LTR MaLR 0 375 42 243 0 0 0 chr6 107933577 107933604 -81345950 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2020 68 0 79 chr6 107933606 107933898 -81345656 - AluY SINE Alu -22 289 21 1732 168 37 19 chr6 107934476 107934798 -81344756 + MLT2C1 LTR ERVL 11 338 -59 187 289 127 78 chr6 107934938 107935080 -81344474 - L2 LINE L2 0 3272 3124 192 253 66 55 chr6 107935413 107935504 -81344050 - MIR SINE MIR -122 140 49 329 170 41 7 chr6 107936758 107936905 -81342649 + (TA)n Simple_repeat Simple_repeat 1 152 0 222 152 61 0 chr6 107936921 107936987 -81342567 + (TA)n Simple_repeat Simple_repeat 1 70 0 1621 235 22 3 chr6 107937175 107937532 -81342022 - MLT1A1 LTR MaLR -1 364 1 1366 246 94 65 chr6 107937664 107938431 -81341123 + HAL1 LINE L1 991 1779 -728 225 0 0 0 chr6 107938834 107938859 -81340695 + (TA)n Simple_repeat Simple_repeat 2 26 0 321 264 140 45 chr6 107938944 107939122 -81340432 + MIR SINE MIR 66 260 -2 232 405 25 0 chr6 107939526 107939647 -81339907 - MIR SINE MIR -87 175 52 629 168 24 24 chr6 107941143 107941268 -81338286 + AluJb SINE Alu 129 253 -59 378 0 0 0 chr6 107941274 107941316 -81338238 + (TG)n Simple_repeat Simple_repeat 1 42 0 409 341 72 54 chr6 107942397 107942673 -81336881 + HAL1b LINE L1 219 510 -838 1895 184 83 5 chr6 107942673 107943070 -81336484 + MSTA LTR MaLR 1 428 0 409 341 72 54 chr6 107943070 107943309 -81336245 + HAL1b LINE L1 510 743 -605 225 238 0 48 chr6 107943677 107943782 -81335772 + L1ME4a LINE L1 5991 6090 -31 195 100 0 0 chr6 107944053 107944083 -81335471 + (CTTG)n Simple_repeat Simple_repeat 1 30 0 200 312 21 57 chr6 107944530 107944671 -81334883 + L2 LINE L2 2715 2850 -464 1493 128 155 0 chr6 107945040 107945298 -81334256 - AluSx SINE Alu -3 309 12 395 226 32 0 chr6 107945526 107945619 -81333935 - MER5A DNA MER1_type -83 106 11 4842 178 31 21 chr6 107945621 107946106 -81333448 - L1MA8 LINE L1 -4 6287 5808 255 61 0 0 chr6 107946106 107946139 -81333415 + (TG)n Simple_repeat Simple_repeat 2 34 0 4842 178 31 21 chr6 107946139 107946751 -81332803 - L1MA8 LINE L1 -483 5808 5181 1068 175 24 32 chr6 107946766 107947012 -81332542 - L1MA8 LINE L1 -940 5206 4963 234 105 0 0 chr6 107950272 107950310 -81329244 + (CA)n Simple_repeat Simple_repeat 1 38 0 1673 304 111 34 chr6 107950572 107951112 -81328442 - L2 LINE L2 -2 3311 2814 1797 122 0 113 chr6 107951112 107951456 -81328098 - AluSx SINE Alu -7 305 1 1673 304 111 34 chr6 107951456 107951884 -81327670 - L2 LINE L2 -499 2814 2260 428 100 58 0 chr6 107951889 107952009 -81327545 + (TA)n Simple_repeat Simple_repeat 2 128 0 245 310 133 9 chr6 107952013 107952126 -81327428 - L2 LINE L2 -1092 2222 2096 889 232 53 76 chr6 107952128 107952430 -81327124 - LTR52 LTR ERVL -48 373 79 2130 123 3 7 chr6 107952519 107952821 -81326733 + AluSx SINE Alu 1 301 -11 625 272 18 111 chr6 107952880 107953222 -81326332 - L2 LINE L2 -1294 2020 1711 333 305 148 24 chr6 107953821 107954031 -81325523 + L1M2 LINE L1 389 624 -6225 5720 199 114 60 chr6 107954508 107956130 -81323424 + MER52A LTR ERV1 46 1755 0 320 284 106 14 chr6 107956607 107956748 -81322806 + HAL1 LINE L1 1032 1185 -1322 281 293 51 18 chr6 107956829 107957088 -81322466 + HAL1b LINE L1 373 1675 -832 813 268 14 1 chr6 107957216 107957431 -81322123 + MIR SINE MIR 31 247 -15 29 28 0 0 chr6 107958260 107958296 -81321258 + AT_rich Low_complexity Low_complexity 1 36 0 283 326 52 12 chr6 107958411 107958583 -81320971 + HAL1 LINE L1 2245 2423 -84 23 54 0 0 chr6 107959737 107959774 -81319780 + AT_rich Low_complexity Low_complexity 1 37 0 328 389 20 7 chr6 107960694 107960843 -81318711 - L3 LINE CR1 -33 1544 1394 360 0 0 0 chr6 107960878 107960918 -81318636 + (TG)n Simple_repeat Simple_repeat 2 41 0 443 306 48 69 chr6 107961473 107961764 -81317790 - L2 LINE L2 -2003 1311 1027 2173 143 11 26 chr6 107961775 107962153 -81317401 - Tigger2a DNA MER2_type -61 373 2 226 197 0 15 chr6 107962201 107962267 -81317287 + L1MC4 LINE L1 6644 6708 -1334 253 301 71 51 chr6 107962886 107963069 -81316485 + MIR SINE MIR 15 205 -57 1937 255 63 25 chr6 107963362 107963993 -81315561 + L1ME1 LINE L1 5388 6042 -124 21 57 0 0 chr6 107964097 107964132 -81315422 + AT_rich Low_complexity Low_complexity 1 35 0 862 159 0 0 chr6 107964666 107964798 -81314756 - AluSq/x SINE Alu -179 133 2 493 276 53 53 chr6 107964939 107965222 -81314332 + L2 LINE L2 2589 2871 -443 188 83 0 28 chr6 107965230 107965266 -81314288 + (CCCCCG)n Simple_repeat Simple_repeat 6 40 0 186 312 130 0 chr6 107965427 107965504 -81314050 + L2 LINE L2 3196 3282 -31 786 236 234 9 chr6 107965604 107966172 -81313382 - LTR50 LTR ERVL -2 793 8 29 0 0 0 chr6 107966255 107966284 -81313270 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr6 107966456 107966479 -81313075 + (TTG)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr6 107967547 107967575 -81311979 + AT_rich Low_complexity Low_complexity 1 28 0 420 306 24 0 chr6 107967751 107967875 -81311679 + MIR SINE MIR 28 154 -108 24 53 0 0 chr6 107968008 107968046 -81311508 + AT_rich Low_complexity Low_complexity 1 38 0 3563 120 3 68 chr6 107969148 107969791 -81309763 + LTR43 LTR ERV1 2 602 0 21 0 0 0 chr6 107970404 107970425 -81309129 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 107970526 107970547 -81309007 + AT_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr6 107970764 107970817 -81308737 + AT_rich Low_complexity Low_complexity 1 53 0 661 170 0 0 chr6 107970888 107971000 -81308554 - FRAM SINE Alu -14 162 51 234 314 57 29 chr6 107971007 107971147 -81308407 + L1ME LINE L1 5519 5662 -459 656 241 15 0 chr6 107971163 107971300 -81308254 - FAM SINE Alu -9 40 1 207 211 42 11 chr6 107971348 107971443 -81308111 + (TAA)n Simple_repeat Simple_repeat 3 100 0 2185 114 0 3 chr6 107972016 107972324 -81307230 + AluSg SINE Alu 1 307 -3 421 285 60 52 chr6 107972340 107972607 -81306947 - MLT1J LTR MaLR -19 492 224 1381 123 186 108 chr6 107973560 107973720 -81305834 + MSTA LTR MaLR 1 147 -281 2523 37 0 46 chr6 107973720 107974046 -81305508 + AluY SINE Alu 1 311 0 1381 123 186 108 chr6 107974046 107974282 -81305272 + MSTA LTR MaLR 147 428 0 214 341 114 8 chr6 107974635 107974758 -81304796 + MIR SINE MIR 72 207 -55 321 218 39 0 chr6 107975352 107975430 -81304124 - MIR3 SINE MIR -7 201 121 22 0 0 0 chr6 107975623 107975645 -81303909 + AT_rich Low_complexity Low_complexity 1 22 0 205 297 99 59 chr6 107975759 107975860 -81303694 - L2 LINE L2 0 3313 3209 818 298 24 16 chr6 107975870 107976122 -81303432 + MIR SINE MIR 3 256 -6 207 0 0 0 chr6 107976508 107976531 -81303023 + (A)n Simple_repeat Simple_repeat 1 23 0 1142 262 27 40 chr6 107976531 107976905 -81302649 + LTR40c LTR ERVL 60 428 -37 31 44 0 0 chr6 107977545 107977590 -81301964 + AT_rich Low_complexity Low_complexity 1 45 0 297 0 0 0 chr6 107978888 107978921 -81300633 + (TG)n Simple_repeat Simple_repeat 2 34 0 235 188 0 0 chr6 107979632 107979680 -81299874 - L2 LINE L2 -3 3269 3222 242 276 164 30 chr6 107979702 107979836 -81299718 - MIR SINE MIR -108 154 3 1952 56 0 8 chr6 107979879 107980131 -81299423 - L1PA7 LINE L1 -15 6139 5890 345 217 93 16 chr6 107980505 107980634 -81298920 + MIR SINE MIR 121 259 -3 308 188 82 24 chr6 107980645 107980730 -81298824 - L1MC4 LINE L1 -1339 6703 6614 3097 127 41 0 chr6 107981006 107981519 -81298035 - L1MA1 LINE L1 0 6302 5769 12531 189 54 15 chr6 107981525 107986124 -81293430 - L1PA7 LINE L1 -8 7565 2774 1367 184 4 4 chr6 107986122 107986394 -81293160 + L1P LINE L1 4395 4666 -1480 * 526 251 167 4 chr6 107986416 107986643 -81292911 + L1M4 LINE L1 2641 2904 -3242 760 299 84 46 chr6 107987803 107988171 -81291383 - MLT1I LTR MaLR 0 409 28 735 219 22 128 chr6 107988326 107988523 -81291031 - MIR SINE MIR -13 249 87 234 0 0 0 chr6 107988523 107988549 -81291005 + (TG)n Simple_repeat Simple_repeat 2 27 0 735 219 22 128 chr6 107988549 107988625 -81290929 - MIR SINE MIR -175 87 5 286 61 41 0 chr6 107988947 107988996 -81290558 + (TAAAA)n Simple_repeat Simple_repeat 2 52 0 205 149 43 0 chr6 107989659 107989706 -81289848 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 25 75 0 0 chr6 107989886 107989939 -81289615 + AT_rich Low_complexity Low_complexity 1 53 0 2208 114 0 10 chr6 107990593 107990892 -81288662 - AluSg SINE Alu -14 296 1 230 343 30 20 chr6 107992744 107992843 -81286711 - MIR SINE MIR -148 114 15 1938 117 4 4 chr6 107993498 107993814 -81285740 + AluSc SINE Alu 1 316 0 390 21 0 0 chr6 107994080 107994127 -81285427 + (CA)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chr6 107994232 107994256 -81285298 + AT_rich Low_complexity Low_complexity 1 24 0 197 439 39 0 chr6 107994343 107994473 -81285081 - L2 LINE L2 -4 3268 3134 208 395 16 0 chr6 107994799 107994928 -81284626 - L2 LINE L2 -587 2727 2597 3460 145 82 87 chr6 107994945 107995775 -81283779 + LTR1B LTR ERV1 1 826 0 491 169 0 0 chr6 107995932 107996015 -81283539 + L1MD1 LINE L1 36 118 -6422 227 250 0 0 chr6 107996013 107996065 -81283489 - L1MC/D LINE L1 -2064 5721 5670 * 3525 230 63 15 chr6 107996067 107998102 -81281452 + L1MD1 LINE L1 4503 6636 0 249 350 21 0 chr6 107998242 107998339 -81281215 - LTR16A LTR ERVL -2 448 350 340 238 56 71 chr6 107998359 107998485 -81281069 - LTR16A LTR ERVL -205 245 122 11920 110 25 17 chr6 107999683 108001590 -81277964 + L1PA7 LINE L1 4 1937 -4524 15589 108 15 5 chr6 108001592 108004762 -81274792 + L1PA7 LINE L1 3298 6469 0 24 53 0 0 chr6 108004775 108004813 -81274741 + AT_rich Low_complexity Low_complexity 1 38 0 25 65 0 0 chr6 108005720 108005766 -81273788 + AT_rich Low_complexity Low_complexity 1 46 0 3662 174 31 3 chr6 108005917 108006622 -81272932 - L1MC1 LINE L1 0 6333 5609 342 152 13 89 chr6 108006641 108006670 -81272884 - MLT1A1 LTR MaLR -292 73 43 1014 221 25 113 chr6 108006670 108007069 -81272485 - MLT1A1 LTR MaLR 0 365 2 342 152 13 89 chr6 108007069 108007118 -81272436 - MLT1A1 LTR MaLR -322 43 1 238 381 21 0 chr6 108009161 108009258 -81270296 + L2 LINE L2 2243 2341 -973 1966 224 3 0 chr6 108009390 108009774 -81269780 - MLT1B LTR MaLR -5 385 1 233 333 67 7 chr6 108009792 108009942 -81269612 + L2 LINE L2 2481 2639 -675 1592 261 83 57 chr6 108010001 108010663 -81268891 - MER76 LTR ERV -7 681 3 691 321 25 4 chr6 108010684 108010924 -81268630 + MIR SINE MIR 18 262 0 21 36 0 0 chr6 108010969 108010997 -81268557 + AT_rich Low_complexity Low_complexity 1 28 0 1347 301 113 6 chr6 108013107 108013578 -81265976 + MLT1G1 LTR MaLR 75 595 0 341 374 101 17 chr6 108013922 108014219 -81265335 + L2 LINE L2 2384 2705 -609 341 264 86 35 chr6 108014482 108014656 -81264898 + L2 LINE L2 3119 3301 -12 22 56 0 0 chr6 108015143 108015179 -81264375 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr6 108015512 108015540 -81264014 + AT_rich Low_complexity Low_complexity 1 28 0 460 287 77 92 chr6 108015903 108016164 -81263390 - MIR SINE MIR -4 258 2 340 315 44 88 chr6 108016208 108016481 -81263073 + MIR SINE MIR 2 262 0 245 341 11 23 chr6 108016872 108016960 -81262594 + MER91A DNA MER1_type 18 104 -92 304 353 82 12 chr6 108017528 108017698 -81261856 - L1MC/D LINE L1 -2206 5602 5421 450 257 132 27 chr6 108017904 108018135 -81261419 - L1ME3 LINE L1 -71 6099 5846 348 271 29 6 chr6 108019504 108019674 -81259880 + (TTTA)n Simple_repeat Simple_repeat 2 175 0 22 0 0 0 chr6 108019711 108019733 -81259821 + AT_rich Low_complexity Low_complexity 1 22 0 1663 216 97 31 chr6 108020061 108020547 -81259007 - MLT2B1 LTR ERVL -2 518 1 303 49 0 0 chr6 108021052 108021093 -81258461 + (CA)n Simple_repeat Simple_repeat 2 42 0 180 0 0 0 chr6 108021209 108021229 -81258325 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 346 287 0 0 chr6 108021229 108021316 -81258238 + CT-rich Low_complexity Low_complexity 2 88 0 242 359 78 0 chr6 108021898 108022027 -81257527 + MIR SINE MIR 40 179 -66 23 0 0 0 chr6 108023762 108023785 -81255769 + AT_rich Low_complexity Low_complexity 1 23 0 1500 106 148 4 chr6 108024255 108024491 -81255063 - THE1C LTR MaLR -105 270 1 8551 123 78 46 chr6 108024491 108025544 -81254010 - THE1C-int LTR MaLR 0 1580 461 2453 48 0 35 chr6 108025544 108025857 -81253697 - AluY SINE Alu -9 302 1 8551 123 78 46 chr6 108025857 108026334 -81253220 - THE1C-int LTR MaLR -1119 461 1 2367 151 0 5 chr6 108026334 108026711 -81252843 - THE1C LTR MaLR 0 375 1 4568 99 34 4 chr6 108026851 108027536 -81252018 + L1PA14 LINE L1 5456 6160 -1 227 267 178 22 chr6 108027571 108027706 -81251848 - L2 LINE L2 -661 2653 2498 500 291 62 53 chr6 108028138 108028382 -81251172 - MIR SINE MIR 0 262 17 1293 216 57 54 chr6 108030296 108030648 -81248906 + MLT1A2 LTR MaLR 4 356 -18 24 0 0 0 chr6 108031016 108031040 -81248514 + AT_rich Low_complexity Low_complexity 1 24 0 213 178 0 0 chr6 108032232 108032277 -81247277 + (TA)n Simple_repeat Simple_repeat 1 45 0 1795 141 0 11 chr6 108032833 108033109 -81246445 - AluSx SINE Alu -7 305 33 942 242 161 9 chr6 108033363 108033698 -81245856 + HAL1 LINE L1 11 396 -2111 988 298 80 8 chr6 108033775 108034137 -81245417 + LTR16A LTR ERVL 36 423 -27 1168 289 140 17 chr6 108034208 108035017 -81244537 + HAL1 LINE L1 467 1374 -1133 22 35 0 0 chr6 108035039 108035068 -81244486 + AT_rich Low_complexity Low_complexity 1 29 0 248 170 21 0 chr6 108035167 108035214 -81244340 + HAL1 LINE L1 1499 1546 -961 355 242 64 113 chr6 108035228 108035757 -81243797 + L1MC5 LINE L1 7405 7907 -54 259 311 14 54 chr6 108035801 108035949 -81243605 + HAL1 LINE L1 1660 1801 -706 243 175 0 0 chr6 108036002 108036059 -81243495 + (CA)n Simple_repeat Simple_repeat 2 58 0 279 306 70 94 chr6 108036584 108037039 -81242515 - LTR67 LTR ERVL 0 557 114 272 228 44 52 chr6 108037074 108037210 -81242344 + L1MC5 LINE L1 7411 7545 -416 232 164 30 0 chr6 108038019 108038086 -81241468 + (TA)n Simple_repeat Simple_repeat 1 69 0 21 36 0 0 chr6 108039290 108039318 -81240236 + AT_rich Low_complexity Low_complexity 1 28 0 288 53 0 0 chr6 108039997 108040035 -81239519 + (GA)n Simple_repeat Simple_repeat 2 39 0 267 150 0 0 chr6 108040747 108040807 -81238747 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 2021 182 59 5 chr6 108040939 108041345 -81238209 + MSTA LTR MaLR 1 428 0 207 162 0 0 chr6 108042499 108042536 -81237018 + (CA)n Simple_repeat Simple_repeat 2 38 0 231 276 102 55 chr6 108042707 108042834 -81236720 - MIR SINE MIR -113 149 17 1883 159 32 41 chr6 108042896 108043236 -81236318 - MER1B DNA MER1_type 0 337 1 23 33 0 0 chr6 108043935 108043965 -81235589 + AT_rich Low_complexity Low_complexity 1 30 0 1772 103 10 103 chr6 108044427 108044729 -81234825 + AluSg SINE Alu 2 275 -35 236 245 61 41 chr6 108045052 108045150 -81234404 - Charlie7 DNA MER1_type -2512 100 1 320 210 16 0 chr6 108045815 108045877 -81233677 - MER5A DNA MER1_type -118 71 9 993 212 23 46 chr6 108046492 108046709 -81232845 + MER58A DNA MER1_type 1 212 -12 24 32 0 0 chr6 108046726 108046757 -81232797 + AT_rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr6 108046834 108046857 -81232697 + (T)n Simple_repeat Simple_repeat 1 23 0 2291 91 0 3 chr6 108047568 108047866 -81231688 + AluSq SINE Alu 2 298 -15 701 306 61 36 chr6 108048365 108048724 -81230830 + Charlie8 DNA MER1_type 87 454 -1963 246 240 32 120 chr6 108049014 108049114 -81230440 - MIR SINE MIR -46 162 69 220 268 0 18 chr6 108050936 108050992 -81228562 + MER5A DNA MER1_type 113 167 -22 616 192 51 0 chr6 108052009 108052186 -81227368 - L1MA7 LINE L1 -5 6286 6101 1617 169 124 17 chr6 108052187 108052270 -81227284 + L1MA7 LINE L1 5696 5769 -522 225 0 0 0 chr6 108052270 108052295 -81227259 + (CA)n Simple_repeat Simple_repeat 2 26 0 1617 169 124 17 chr6 108052295 108052567 -81226987 + L1MA7 LINE L1 5769 6089 -202 684 295 12 85 chr6 108052580 108052922 -81226632 + MLT2C1 LTR ERVL 1 317 -80 383 180 29 166 chr6 108053275 108053414 -81226140 + L1MD3 LINE L1 6836 7000 -853 286 225 40 22 chr6 108053422 108053705 -81225849 + L1MD3 LINE L1 7622 7944 -51 1586 219 104 39 chr6 108053705 108054148 -81225406 + MLT2B1 LTR ERVL 1 480 -40 314 23 0 23 chr6 108054148 108054192 -81225362 + (TG)n Simple_repeat Simple_repeat 2 44 0 1586 219 104 39 chr6 108054192 108054236 -81225318 + MLT2B1 LTR ERVL 480 520 0 286 225 40 22 chr6 108054236 108054279 -81225275 + L1MD3 LINE L1 7944 7985 -10 296 295 45 0 chr6 108054717 108054829 -81224725 + MER103 DNA DNA 8 124 -42 240 35 0 0 chr6 108055956 108055985 -81223569 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1338 269 85 42 chr6 108056323 108057283 -81222271 + L1ME LINE L1 924 1866 -4674 419 279 18 48 chr6 108057313 108057478 -81222076 + L1ME LINE L1 2357 2516 -4024 6674 152 20 18 chr6 108057488 108058709 -81220845 - Tigger3b DNA MER2_type -1 1230 7 557 171 41 18 chr6 108059822 108059992 -81219562 + GA-rich Low_complexity Low_complexity 2 175 0 1309 281 60 18 chr6 108060390 108061133 -81218421 + L1ME LINE L1 2392 3167 -3373 245 230 101 56 chr6 108061128 108061415 -81218139 + L1ME LINE L1 3552 3851 -2689 * 5547 225 89 3 chr6 108061413 108062590 -81216964 + L1M1 LINE L1 13 1290 -6275 1878 125 40 9 chr6 108062589 108062916 -81216638 + L1MA3 LINE L1 5924 6260 -45 * 488 168 11 0 chr6 108062915 108063010 -81216544 + L1PA16 LINE L1 5415 5510 -656 * 254 122 0 0 chr6 108063005 108063046 -81216508 - L1P LINE L1 -4125 2021 1981 * 5388 60 7 1 chr6 108063046 108063732 -81215822 + L1PA7 LINE L1 5463 6152 -2 2797 145 87 11 chr6 108063752 108064282 -81215272 + L1PA16 LINE L1 5597 6166 0 245 163 0 0 chr6 108064291 108064340 -81215214 + L1MA2 LINE L1 6246 6294 -10 554 276 110 17 chr6 108064360 108064650 -81214904 + L1ME1 LINE L1 3491 3807 -2339 2160 226 46 72 chr6 108064653 108065260 -81214294 + L1ME1 LINE L1 5318 5904 -262 2246 116 10 0 chr6 108065260 108065570 -81213984 - AluSq SINE Alu 0 313 1 2160 226 46 72 chr6 108065570 108065716 -81213838 + L1ME1 LINE L1 5904 6052 -114 2283 247 71 26 chr6 108065872 108065977 -81213577 + L1ME1 LINE L1 5325 5424 -742 3392 167 9 17 chr6 108065977 108066613 -81212941 + L1MC1 LINE L1 5703 6333 0 2283 247 71 26 chr6 108066613 108067308 -81212246 + L1ME1 LINE L1 5424 6161 -5 511 262 180 5 chr6 108067837 108068043 -81211511 - MIR SINE MIR 0 262 21 24 53 0 0 chr6 108069054 108069092 -81210462 + AT_rich Low_complexity Low_complexity 1 38 0 1726 166 27 0 chr6 108069105 108069401 -81210153 - AluSg SINE Alu -6 304 1 6377 65 5 1 chr6 108069672 108071037 -81208517 - L1PA5 LINE L1 -57 6097 4726 198 0 0 0 chr6 108071188 108071210 -81208344 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1491 176 3 40 chr6 108071214 108071510 -81208044 - AluJo SINE Alu -27 285 1 198 369 0 0 chr6 108071969 108072034 -81207520 + MIR3 SINE MIR 90 154 -54 23 0 0 0 chr6 108072151 108072174 -81207380 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr6 108072456 108072493 -81207061 + AT_rich Low_complexity Low_complexity 1 37 0 225 115 16 49 chr6 108072621 108072682 -81206872 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 1620 148 15 26 chr6 108072683 108072954 -81206600 - AluSx SINE Alu -19 293 26 2538 62 26 3 chr6 108073185 108073524 -81206030 + L1PA7 LINE L1 5794 6140 -14 2492 64 0 0 chr6 108073921 108074232 -81205322 + AluY SINE Alu 1 311 0 22 56 0 0 chr6 108074269 108074305 -81205249 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr6 108074876 108074899 -81204655 + AT_rich Low_complexity Low_complexity 1 23 0 276 102 0 0 chr6 108076906 108076955 -81202599 + (A)n Simple_repeat Simple_repeat 1 49 0 205 369 39 10 chr6 108077840 108077943 -81201611 - MER5A DNA MER1_type 0 189 84 305 133 0 0 chr6 108078931 108078991 -81200563 - L1PA14 LINE L1 -2 6159 6100 1822 149 4 7 chr6 108078991 108079332 -81200222 - L1PA14 LINE L1 -142 6019 5675 392 58 0 0 chr6 108079304 108079356 -81200198 + L1P4 LINE L1 5675 5726 -437 * 2882 109 5 2 chr6 108079392 108079814 -81199740 - L1P4 LINE L1 -448 5726 5304 234 222 0 0 chr6 108080123 108080168 -81199386 - MIR SINE MIR -63 145 101 1620 182 37 66 chr6 108080770 108081149 -81198405 + MLT1B LTR MaLR 23 390 0 1850 240 33 13 chr6 108081410 108081868 -81197686 - MLT1C LTR MaLR 0 467 1 25 75 0 0 chr6 108082357 108082410 -81197144 + AT_rich Low_complexity Low_complexity 1 53 0 183 205 0 0 chr6 108082528 108082567 -81196987 + CT-rich Low_complexity Low_complexity 5 43 0 3331 136 17 8 chr6 108084966 108085488 -81194066 - MER1A DNA MER1_type 0 527 1 301 294 106 0 chr6 108085593 108085722 -81193832 - MIR SINE MIR -62 146 30 614 38 0 0 chr6 108086557 108086637 -81192917 - AluYb8 SINE Alu 0 318 239 13962 185 30 22 chr6 108088894 108091618 -81187936 + L1M1 LINE L1 23 2769 -4796 27 49 0 0 chr6 108091777 108091818 -81187736 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr6 108093485 108093510 -81186044 + AT_rich Low_complexity Low_complexity 1 25 0 1194 210 110 57 chr6 108094985 108095357 -81184197 + MSTD LTR MaLR 1 392 -4 307 270 27 47 chr6 108095546 108095694 -81183860 + L1ME3A LINE L1 6020 6164 -6 357 274 95 46 chr6 108096003 108096288 -81183266 - L1M4 LINE L1 -3261 3383 3085 749 214 81 6 chr6 108096697 108096870 -81182684 - MER20 DNA MER1_type 0 219 34 2135 103 0 14 chr6 108096951 108097272 -81182282 + AluSq SINE Alu 1 317 0 372 429 31 0 chr6 108097709 108097900 -81181654 - MLT1K LTR MaLR -326 262 66 38 51 0 0 chr6 108098036 108098095 -81181459 + AT_rich Low_complexity Low_complexity 1 59 0 24 67 0 0 chr6 108098179 108098224 -81181330 + AT_rich Low_complexity Low_complexity 1 45 0 1398 194 16 40 chr6 108098477 108098781 -81180773 - AluJo SINE Alu -15 297 1 279 157 0 0 chr6 108099320 108099371 -81180183 + (TG)n Simple_repeat Simple_repeat 1 51 0 23 0 0 0 chr6 108100539 108100562 -81178992 + AT_rich Low_complexity Low_complexity 1 23 0 2323 53 0 4 chr6 108100622 108100903 -81178651 - AluY SINE Alu -11 300 21 203 189 0 0 chr6 108101407 108101444 -81178110 + A-rich Low_complexity Low_complexity 1 37 0 3456 223 49 11 chr6 108102546 108103603 -81175951 - L1MB7 LINE L1 -19 6165 5068 701 272 35 0 chr6 108103607 108103835 -81175719 - MER34 LTR ERV1 -303 239 4 2675 181 73 2 chr6 108103875 108104422 -81175132 + L1 LINE L1 3623 4208 -1938 2383 229 84 90 chr6 108104421 108105044 -81174510 - L1M4 LINE L1 -5437 1105 480 * 1087 155 0 0 chr6 108105044 108105225 -81174329 - L1MA3 LINE L1 0 6305 6125 2383 229 84 90 chr6 108105225 108105305 -81174249 - L1M4 LINE L1 -6062 480 401 351 0 0 0 chr6 108105305 108105344 -81174210 + (TG)n Simple_repeat Simple_repeat 2 40 0 185 0 40 0 chr6 108105343 108105368 -81174186 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 2383 229 84 90 chr6 108105344 108105723 -81173831 - L1M4 LINE L1 -6141 401 52 23 54 0 0 chr6 108106998 108107035 -81172519 + AT_rich Low_complexity Low_complexity 1 37 0 588 121 0 0 chr6 108108535 108108626 -81170928 + (GGAA)n Simple_repeat Simple_repeat 1 91 0 25 31 0 0 chr6 108109403 108109435 -81170119 + AT_rich Low_complexity Low_complexity 1 32 0 2137 136 3 0 chr6 108109845 108110155 -81169399 + AluSx SINE Alu 2 312 0 381 245 66 40 chr6 108110258 108110409 -81169145 + L2 LINE L2 3159 3313 0 23 0 0 0 chr6 108111355 108111378 -81168176 + AT_rich Low_complexity Low_complexity 1 23 0 234 348 131 36 chr6 108111639 108112082 -81167472 - L2 LINE L2 -547 2767 2283 271 226 0 0 chr6 108112127 108112189 -81167365 - L1M4 LINE L1 -3450 2696 2635 422 311 54 0 chr6 108112431 108112653 -81166901 - L1M4 LINE L1 -2630 3516 3283 312 274 104 0 chr6 108112676 108112782 -81166772 + MER94 DNA DNA 12 128 -6 29 60 0 0 chr6 108112868 108112918 -81166636 + AT_rich Low_complexity Low_complexity 1 50 0 2867 162 11 8 chr6 108113543 108114067 -81165487 + L1PA13 LINE L1 5638 6163 0 1547 177 61 0 chr6 108114078 108114372 -81165182 + L1PA16 LINE L1 5855 6166 0 228 264 194 23 chr6 108114397 108114526 -81165028 - L2 LINE L2 -81 3232 3082 298 299 15 52 chr6 108115037 108115171 -81164383 + MLT2F LTR ERVL 13 141 -522 674 225 22 33 chr6 108115208 108115390 -81164164 + MLT1E3 LTR MaLR 49 228 -396 513 281 82 67 chr6 108115225 108115556 -81163998 + MLT2C1 LTR ERVL 44 379 -18 * 365 241 0 3 chr6 108115762 108115878 -81163676 + L1PA14 LINE L1 5928 6041 -133 1069 270 73 40 chr6 108115993 108116419 -81163135 - MLT1D LTR MaLR -44 461 22 1882 131 9 41 chr6 108117164 108117484 -81162070 + AluSx SINE Alu 1 310 -2 565 274 26 13 chr6 108119217 108119370 -81160184 + MIR SINE MIR 6 160 -102 869 207 156 60 chr6 108119864 108120197 -81159357 + MLT1A1 LTR MaLR 1 365 0 5048 188 22 13 chr6 108120602 108121126 -81158428 + L1MA4 LINE L1 5064 5582 -718 180 0 0 0 chr6 108121126 108121146 -81158408 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5048 188 22 13 chr6 108121146 108121837 -81157717 + L1MA4 LINE L1 5582 6294 -6 778 329 52 36 chr6 108121867 108122311 -81157243 - L2 LINE L2 -639 2675 2225 276 316 0 13 chr6 108122314 108122390 -81157164 - L2 LINE L2 -16 3297 3223 829 280 188 10 chr6 108122390 108122520 -81157034 + MLT1E LTR MaLR 1 107 -486 1594 138 125 20 chr6 108122520 108122825 -81156729 - MER1B DNA MER1_type 0 337 1 829 280 188 10 chr6 108122825 108123244 -81156310 + MLT1E LTR MaLR 107 590 -3 528 287 60 9 chr6 108124805 108125021 -81154533 + Tigger6 DNA MER2_type 1068 1294 -303 378 338 68 43 chr6 108125061 108125431 -81154123 + L1PA16 LINE L1 1 379 -7202 9128 236 31 40 chr6 108126174 108127589 -81151965 + L1PA16 LINE L1 2182 3607 -3982 2707 162 53 0 chr6 108127589 108128076 -81151478 - MER75 DNA T2_type 0 514 2 9128 236 31 40 chr6 108128076 108129650 -81149904 + L1PA16 LINE L1 3607 5193 -2396 2074 141 21 24 chr6 108129650 108130026 -81149528 - THE1C LTR MaLR 0 375 1 9128 236 31 40 chr6 108130026 108131460 -81148094 + L1PA16 LINE L1 5193 6637 -952 189 0 0 0 chr6 108131460 108131481 -81148073 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 9128 236 31 40 chr6 108131481 108131940 -81147614 + L1PA16 LINE L1 6637 7015 -574 1995 116 0 4 chr6 108131940 108132207 -81147347 - AluSx SINE Alu -44 268 3 9128 236 31 40 chr6 108132207 108132435 -81147119 + L1PA16 LINE L1 7015 7243 -346 1342 65 8 266 chr6 108132438 108132821 -81146733 + LTR12 LTR ERV1 1 284 -430 226 292 34 0 chr6 108132822 108132911 -81146643 + LTR30 LTR ERV1 552 643 -79 652 144 0 0 chr6 108132913 108133010 -81146544 + LTR12 LTR ERV1 615 711 -3 1776 189 29 0 chr6 108133010 108133354 -81146200 + L1PA16 LINE L1 7242 7595 -9 871 223 45 23 chr6 108133383 108133648 -81145906 + Tigger6 DNA MER2_type 1327 1597 0 25 0 0 0 chr6 108133758 108133783 -81145771 + AT_rich Low_complexity Low_complexity 1 25 0 2102 126 0 3 chr6 108133940 108134234 -81145320 + AluSc SINE Alu 1 293 -16 2223 105 3 10 chr6 108134564 108134877 -81144677 - AluSx SINE Alu -1 311 1 1640 123 20 0 chr6 108135676 108135928 -81143626 - L1PA13 LINE L1 0 6163 5907 24 32 0 0 chr6 108136558 108136589 -81142965 + AT_rich Low_complexity Low_complexity 1 31 0 239 246 62 0 chr6 108136809 108136874 -81142680 - L1ME LINE L1 -451 5670 5602 865 300 113 39 chr6 108137031 108137722 -81141832 + L1M4 LINE L1 74 815 -5727 180 111 0 0 chr6 108137733 108137760 -81141794 + (T)n Simple_repeat Simple_repeat 1 27 0 249 265 93 20 chr6 108140136 108140287 -81139267 + L1ME LINE L1 5718 5879 -242 1137 132 79 0 chr6 108140382 108140571 -81138983 - L1MA3 LINE L1 -15 6290 6087 315 316 37 15 chr6 108140745 108140881 -81138673 - L2 LINE L2 -4 3309 3171 302 346 70 67 chr6 108141049 108141451 -81138103 - L2 LINE L2 -1653 1661 1259 2124 176 41 7 chr6 108143435 108143666 -81135888 - MSTA LTR MaLR 0 428 175 1575 89 0 5 chr6 108143666 108143868 -81135686 - AluY SINE Alu -11 300 100 2124 176 41 7 chr6 108143868 108144050 -81135504 - MSTA LTR MaLR -253 175 1 7900 192 46 11 chr6 108144050 108145646 -81133908 - MSTA-int LTR MaLR 0 1651 1 638 144 10 0 chr6 108145646 108145750 -81133804 - MSTA LTR MaLR 0 428 324 1496 164 8 80 chr6 108145750 108146122 -81133432 - MER4A LTR ERV1 0 664 261 617 108 0 11 chr6 108146128 108146221 -81133333 - MER4A LTR ERV1 -572 92 1 1688 165 48 9 chr6 108146221 108146536 -81133018 - MSTA LTR MaLR -101 327 1 246 136 0 0 chr6 108147348 108147392 -81132162 + (A)n Simple_repeat Simple_repeat 1 44 0 1259 212 29 68 chr6 108148680 108148901 -81130653 + AluJo SINE Alu 1 208 -94 226 0 59 0 chr6 108148901 108148935 -81130619 + (TA)n Simple_repeat Simple_repeat 2 37 0 1259 212 29 68 chr6 108148935 108149024 -81130530 + AluJo SINE Alu 208 299 -3 372 138 0 35 chr6 108149256 108149343 -81130211 + (GGAGA)n Simple_repeat Simple_repeat 5 88 0 3291 85 2 11 chr6 108150487 108150886 -81128668 + MLT2A1 LTR ERVL 1 397 -47 459 48 0 0 chr6 108150886 108150948 -81128606 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 3291 85 2 11 chr6 108150948 108150996 -81128558 + MLT2A1 LTR ERVL 397 444 0 2075 125 3 3 chr6 108151749 108152046 -81127508 + AluSc SINE Alu 1 297 -12 23 0 0 0 chr6 108152471 108152494 -81127060 + AT_rich Low_complexity Low_complexity 1 23 0 1439 196 43 4 chr6 108152494 108152770 -81126784 - AluJb SINE Alu -25 287 1 2301 68 0 0 chr6 108153153 108153453 -81126101 + AluY SINE Alu 1 300 0 22 0 0 0 chr6 108154013 108154035 -81125519 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr6 108154337 108154361 -81125193 + (T)n Simple_repeat Simple_repeat 1 24 0 216 62 42 21 chr6 108154602 108154650 -81124904 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 192 77 0 0 chr6 108155812 108155838 -81123716 + (TA)n Simple_repeat Simple_repeat 1 26 0 24 32 0 0 chr6 108156455 108156486 -81123068 + AT_rich Low_complexity Low_complexity 1 31 0 186 103 0 0 chr6 108157659 108157688 -81121866 + (T)n Simple_repeat Simple_repeat 1 29 0 43099 31 21 1 chr6 108157690 108163724 -81115830 - L1HS LINE L1 0 6155 1 416 302 71 62 chr6 108164478 108164786 -81114768 - L2 LINE L2 -1 3312 3002 * 437 336 210 36 chr6 108164783 108165312 -81114242 - L2 LINE L2 -429 2885 2265 302 270 36 45 chr6 108165464 108165575 -81113979 + LTR16C LTR ERVL 158 267 -224 2053 176 12 40 chr6 108165628 108166002 -81113552 + MLT2D LTR ERVL 1 363 -51 198 0 0 0 chr6 108166002 108166024 -81113530 + (TC)n Simple_repeat Simple_repeat 1 22 0 2053 176 12 40 chr6 108166024 108166075 -81113479 + MLT2D LTR ERVL 363 414 0 634 290 87 0 chr6 108166139 108166346 -81113208 + ERVL-D LTR ERVL 25 249 -5515 268 226 99 105 chr6 108166348 108166529 -81113025 + MIR SINE MIR 81 260 -2 34 0 0 0 chr6 108166604 108166638 -81112916 + AT_rich Low_complexity Low_complexity 1 34 0 185 240 0 40 chr6 108166702 108166752 -81112802 - L2 LINE L2 -95 3218 3171 714 113 40 0 chr6 108167139 108167290 -81112264 + (TA)n Simple_repeat Simple_repeat 2 158 0 1919 137 0 11 chr6 108167292 108167576 -81111978 - AluSx SINE Alu -31 281 1 29 28 0 0 chr6 108168847 108168883 -81110671 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr6 108169377 108169407 -81110147 + AT_rich Low_complexity Low_complexity 1 30 0 2130 123 0 10 chr6 108169408 108169708 -81109846 - AluSx SINE Alu -15 297 1 1524 183 72 3 chr6 108169939 108170059 -81109495 + AluJb SINE Alu 1 111 -201 378 0 0 0 chr6 108170059 108170101 -81109453 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1524 183 72 3 chr6 108170101 108170270 -81109284 + AluJb SINE Alu 111 310 -2 21 0 0 0 chr6 108170455 108170476 -81109078 + AT_rich Low_complexity Low_complexity 1 21 0 213 355 0 14 chr6 108170647 108170785 -81108769 + (CATATA)n Simple_repeat Simple_repeat 6 141 0 1507 256 63 18 chr6 108170889 108171382 -81108172 + MER34 LTR ERV1 26 540 -2 410 288 16 8 chr6 108171830 108171955 -81107599 - MER69A DNA AcHobo -16 161 36 22 0 0 0 chr6 108172301 108172323 -81107231 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 108174914 108174944 -81104610 + AT_rich Low_complexity Low_complexity 1 30 0 1619 213 39 36 chr6 108175765 108176150 -81103404 - MER88 LTR ERVL 0 464 79 240 111 0 0 chr6 108176706 108176742 -81102812 + (CA)n Simple_repeat Simple_repeat 1 36 0 32 0 0 0 chr6 108176970 108177002 -81102552 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr6 108177444 108177467 -81102087 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 108178302 108178324 -81101230 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 108178704 108178725 -81100829 + AT_rich Low_complexity Low_complexity 1 21 0 204 318 0 0 chr6 108179280 108179343 -81100211 + (CA)n Simple_repeat Simple_repeat 2 64 0 186 43 0 0 chr6 108179386 108179409 -81100145 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 34 24 0 0 chr6 108179690 108179731 -81099823 + AT_rich Low_complexity Low_complexity 1 41 0 267 263 74 42 chr6 108180461 108180556 -81098998 + L2 LINE L2 3171 3268 -4 21 36 0 0 chr6 108180763 108180791 -81098763 + AT_rich Low_complexity Low_complexity 1 28 0 2367 278 91 20 chr6 108180909 108182228 -81097326 + L1MEc LINE L1 1081 2492 -3904 1304 167 4 9 chr6 108182253 108182486 -81097068 - L1PA13 LINE L1 0 6163 5932 3771 146 5 14 chr6 108182487 108183659 -81095895 - L1PA13 LINE L1 -325 5836 4675 * 4425 164 10 38 chr6 108183655 108183774 -81095780 + L1P LINE L1 3592 3713 -2433 198 0 0 0 chr6 108183774 108183796 -81095758 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 4425 164 10 38 chr6 108183796 108184556 -81094998 + L1P LINE L1 3713 4447 -1699 516 259 7 35 chr6 108284979 108285127 -80994427 - MER58C DNA MER1_type -45 170 27 355 322 126 55 chr6 108285642 108286095 -80993459 + L2 LINE L2 2825 3309 -4 1879 127 65 3 chr6 108286603 108286895 -80992659 - AluSx SINE Alu -2 310 1 1400 196 44 30 chr6 108287157 108287524 -80992030 + L1MA8 LINE L1 5916 6287 -4 260 314 96 27 chr6 108287529 108287749 -80991805 + L1MC/D LINE L1 5489 5723 -519 365 277 135 46 chr6 108287905 108288067 -80991487 + L1ME2 LINE L1 831 977 -5419 1171 159 26 9 chr6 108288067 108288294 -80991260 + L1PA15 LINE L1 5935 6165 0 365 277 135 46 chr6 108288294 108288434 -80991120 + L1ME2 LINE L1 977 1160 -5236 24 32 0 0 chr6 108288693 108288724 -80990830 + AT_rich Low_complexity Low_complexity 1 31 0 309 338 31 4 chr6 108288773 108289001 -80990553 + L1ME2 LINE L1 1558 1791 -4605 491 268 42 83 chr6 108289024 108289548 -80990006 + L1ME2 LINE L1 2182 2641 -3574 589 263 201 6 chr6 108289594 108289773 -80989781 + L1PA13 LINE L1 1090 1303 -5484 * 3522 252 145 25 chr6 108289770 108290768 -80988786 + L1PA13 LINE L1 2903 3780 -3017 6503 180 10 4 chr6 108290768 108292841 -80986713 + L1PA13 LINE L1 4727 6811 -3 3522 252 145 25 chr6 108292841 108293315 -80986239 + L1PA13 LINE L1 3780 4196 -2601 1540 202 52 73 chr6 108293315 108293756 -80985798 - MSTB1 LTR MaLR 0 432 1 3522 252 145 25 chr6 108293756 108294141 -80985413 + L1PA13 LINE L1 4196 5047 -1750 264 296 83 38 chr6 108294138 108294402 -80985152 + L1ME2 LINE L1 5070 5345 -870 * 732 221 62 90 chr6 108294423 108294651 -80984903 - MLT1A2 LTR MaLR 0 374 141 2050 137 59 14 chr6 108294651 108295009 -80984545 - THE1C LTR MaLR 0 375 2 8826 124 47 58 chr6 108295010 108296607 -80982947 - THE1C-int LTR MaLR 0 1580 1 2155 153 25 3 chr6 108296607 108296973 -80982581 - THE1C LTR MaLR 0 375 2 732 221 62 90 chr6 108296973 108297031 -80982523 - MLT1A2 LTR MaLR -231 143 93 1007 275 59 53 chr6 108297096 108297642 -80981912 + L1ME2 LINE L1 5332 5880 -355 2085 101 3 20 chr6 108297645 108297943 -80981611 + AluSp SINE Alu 1 293 -20 228 200 14 14 chr6 108297948 108298018 -80981536 + (TTA)n Simple_repeat Simple_repeat 1 70 0 580 239 27 97 chr6 108298056 108298399 -80981155 + L1ME2 LINE L1 5899 6230 -5 192 40 0 0 chr6 108299009 108299034 -80980520 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 240 35 0 0 chr6 108300199 108300228 -80979326 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1664 71 35 0 chr6 108301163 108301389 -80978165 - L1PA7 LINE L1 -11 6143 5910 991 204 22 152 chr6 108301748 108302150 -80977404 - MLT1A1 LTR MaLR 0 365 16 312 27 0 0 chr6 108302291 108302328 -80977226 + (TA)n Simple_repeat Simple_repeat 2 38 0 13106 226 31 15 chr6 108303282 108307946 -80971608 + L1PB3 LINE L1 11 4598 -2272 180 0 0 0 chr6 108307946 108307966 -80971588 + (CAA)n Simple_repeat Simple_repeat 2 21 0 13106 226 31 15 chr6 108307966 108310696 -80968858 + L1PB3 LINE L1 4598 6655 -215 2289 109 3 0 chr6 108310696 108311008 -80968546 + AluSp SINE Alu 1 313 0 13106 226 31 15 chr6 108311008 108311227 -80968327 + L1PB3 LINE L1 6655 6869 -1 245 308 77 10 chr6 108311717 108311821 -80967733 - MIR SINE MIR -24 238 128 228 35 0 0 chr6 108312587 108312616 -80966938 + (TTC)n Simple_repeat Simple_repeat 2 30 0 2205 85 3 0 chr6 108312626 108312908 -80966646 - AluSg SINE Alu -27 283 1 274 383 31 0 chr6 108312933 108313061 -80966493 + MIR3 SINE MIR 62 193 -15 500 286 88 82 chr6 108314393 108314883 -80964671 - L1MEd LINE L1 -4989 1130 638 11739 168 55 30 chr6 108315632 108317210 -80962344 - Tigger1 DNA MER2_type 0 2418 881 6834 58 79 5 chr6 108317210 108318148 -80961406 - L1PA7 LINE L1 -3 6151 5200 11739 168 55 30 chr6 108318148 108318424 -80961130 - Tigger1 DNA MER2_type -1537 881 613 1819 176 0 0 chr6 108318424 108318714 -80960840 + AluSx SINE Alu 3 292 -20 11739 168 55 30 chr6 108318714 108318914 -80960640 - Tigger1 DNA MER2_type -1805 613 419 2089 196 11 36 chr6 108318914 108319353 -80960201 + MSTA LTR MaLR 1 428 0 11739 168 55 30 chr6 108319353 108319655 -80959899 - Tigger1 DNA MER2_type -1999 419 1 1680 195 56 51 chr6 108319971 108320401 -80959153 - MSTB1 LTR MaLR 0 432 1 797 218 24 6 chr6 108320698 108320863 -80958691 - FAM SINE Alu -7 168 1 2793 206 28 30 chr6 108321037 108322087 -80957467 - L1MC/D LINE L1 -511 5822 4777 384 291 33 84 chr6 108323193 108323492 -80956062 - L2 LINE L2 -4 3309 3026 682 187 0 60 chr6 108323495 108323645 -80955909 + AluJb SINE Alu 140 280 -32 1139 295 44 61 chr6 108323691 108324038 -80955516 - L2 LINE L2 -276 3037 2704 1804 88 92 37 chr6 108324038 108324333 -80955221 - AluY SINE Alu 0 311 1 1139 295 44 61 chr6 108324333 108324561 -80954993 - L2 LINE L2 -609 2704 2474 769 187 26 13 chr6 108324573 108324728 -80954826 - LTR40a LTR ERVL -359 160 4 243 316 59 43 chr6 108324935 108325122 -80954432 + MLT1K LTR MaLR 375 564 -24 296 241 176 19 chr6 108325674 108325782 -80953772 - MIR SINE MIR -29 233 109 36368 37 3 1 chr6 108325789 108331936 -80947618 + L1PA3 LINE L1 3 6155 0 267 54 0 0 chr6 108333186 108333223 -80946331 + (TG)n Simple_repeat Simple_repeat 1 37 0 23 33 0 0 chr6 108333299 108333329 -80946225 + AT_rich Low_complexity Low_complexity 1 30 0 191 300 8 85 chr6 108334256 108334386 -80945168 - L2 LINE L2 -638 2676 2557 680 290 52 39 chr6 108335302 108335533 -80944021 - MIR SINE MIR 0 262 29 180 318 167 0 chr6 108335672 108335738 -80943816 - MIR SINE MIR -157 105 29 510 229 0 0 chr6 108336189 108336311 -80943243 + (CATATA)n Simple_repeat Simple_repeat 2 123 0 365 291 51 34 chr6 108336315 108336490 -80943064 + L1ME4a LINE L1 5932 6109 -12 21 57 0 0 chr6 108336708 108336743 -80942811 + AT_rich Low_complexity Low_complexity 1 35 0 213 211 0 133 chr6 108338435 108338525 -80941029 + MIR SINE MIR 120 197 -65 324 311 124 12 chr6 108338715 108338876 -80940678 - MIR SINE MIR -19 243 65 197 316 113 15 chr6 108339520 108339653 -80939901 + MIR SINE MIR 104 249 -13 285 204 35 106 chr6 108340016 108340129 -80939425 + MIR SINE MIR 103 207 -55 459 323 70 42 chr6 108340241 108340671 -80938883 + MLT1J1 LTR MaLR 5 446 0 24 0 0 0 chr6 108340902 108340926 -80938628 + AT_rich Low_complexity Low_complexity 1 24 0 518 257 47 0 chr6 108341046 108341194 -80938360 - MIR SINE MIR -26 236 82 553 261 100 46 chr6 108341364 108341605 -80937949 - MLT1I LTR MaLR -143 266 13 313 288 0 0 chr6 108341624 108341697 -80937857 - MIR SINE MIR -182 80 8 2255 252 63 40 chr6 108342570 108343394 -80936160 - L1ME1 LINE L1 -50 6185 5343 1576 231 114 36 chr6 108343499 108343886 -80935668 - L1ME1 LINE L1 -896 5319 4964 205 0 114 0 chr6 108343886 108343921 -80935633 + T-rich Low_complexity Low_complexity 2 40 0 2246 66 0 3 chr6 108343924 108344211 -80935343 - AluY SINE Alu -24 287 2 1576 231 114 36 chr6 108344211 108344602 -80934952 - L1ME1 LINE L1 -1252 4963 4476 21 57 0 0 chr6 108344618 108344653 -80934901 + AT_rich Low_complexity Low_complexity 1 35 0 338 233 95 26 chr6 108344797 108344913 -80934641 - L1ME1 LINE L1 -6017 379 256 180 77 0 0 chr6 108344929 108344955 -80934599 + (TG)n Simple_repeat Simple_repeat 1 26 0 218 135 27 27 chr6 108344979 108345053 -80934501 + (TA)n Simple_repeat Simple_repeat 2 75 0 833 278 101 34 chr6 108345324 108345821 -80933733 + HAL1 LINE L1 1861 2390 -117 807 301 9 4 chr6 108345978 108346204 -80933350 + MIR SINE MIR 15 241 -21 29635 121 18 60 chr6 108347659 108350654 -80928900 - L1PA7 LINE L1 -1 6153 3584 333 0 0 0 chr6 108350654 108350691 -80928863 + (TG)n Simple_repeat Simple_repeat 2 38 0 29635 121 18 60 chr6 108350691 108354124 -80925430 - L1PA7 LINE L1 -2570 3584 8 2076 158 55 19 chr6 108355697 108356076 -80923478 + MSTD LTR MaLR 1 393 -3 31 44 0 0 chr6 108356460 108356505 -80923049 + AT_rich Low_complexity Low_complexity 1 45 0 309 51 0 0 chr6 108357778 108357817 -80921737 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 57 0 0 chr6 108357992 108358027 -80921527 + AT_rich Low_complexity Low_complexity 1 35 0 212 188 14 0 chr6 108358347 108358416 -80921138 + (TTA)n Simple_repeat Simple_repeat 2 71 0 25 0 0 0 chr6 108358899 108358924 -80920630 + AT_rich Low_complexity Low_complexity 1 25 0 232 258 169 0 chr6 108360177 108360266 -80919288 + MER5A DNA MER1_type 9 112 -77 452 288 28 64 chr6 108360624 108360874 -80918680 - MLT1L LTR MaLR -333 282 42 199 382 18 18 chr6 108361180 108361290 -80918264 + L2 LINE L2 3204 3313 0 1756 161 14 4 chr6 108361408 108361725 -80917829 + AluSx SINE Alu 1 320 0 772 197 0 7 chr6 108361734 108361881 -80917673 - L1MA6 LINE L1 -200 6100 5955 642 224 0 0 chr6 108361897 108362040 -80917514 + L1MA6 LINE L1 6151 6293 -7 261 0 0 0 chr6 108363405 108363434 -80916120 + (TA)n Simple_repeat Simple_repeat 2 30 0 222 344 77 22 chr6 108364298 108364481 -80915073 + MIR SINE MIR 6 198 -64 199 384 0 12 chr6 108364633 108364719 -80914835 + MIR SINE MIR 44 128 -80 534 261 80 32 chr6 108364806 108365055 -80914499 - MIR SINE MIR 0 262 2 2304 113 6 6 chr6 108365908 108366253 -80913301 - L1PB1 LINE L1 0 6151 5807 287 294 98 2 chr6 108366262 108366414 -80913140 - L1ME LINE L1 -656 5514 5350 264 312 26 65 chr6 108366802 108366956 -80912598 - L2 LINE L2 -856 2458 2311 567 315 75 13 chr6 108367054 108367445 -80912109 - L2 LINE L2 -1220 2094 1594 21 0 0 0 chr6 108367546 108367567 -80911987 + AT_rich Low_complexity Low_complexity 1 21 0 586 236 42 31 chr6 108367735 108367926 -80911628 + MER106A DNA MER1_type 29 221 -15 35 54 0 0 chr6 108369298 108369354 -80910200 + AT_rich Low_complexity Low_complexity 1 56 0 12589 166 19 14 chr6 108370042 108372323 -80907231 + Tigger1 DNA MER2_type 28 2321 -97 204 125 0 0 chr6 108372477 108372509 -80907045 + (CA)n Simple_repeat Simple_repeat 2 33 0 1545 164 47 7 chr6 108372604 108372878 -80906676 - AluJo SINE Alu -27 285 1 1608 222 42 50 chr6 108373153 108373608 -80905946 - MLT1D LTR MaLR -3 502 52 21 57 0 0 chr6 108373797 108373832 -80905722 + AT_rich Low_complexity Low_complexity 1 35 0 242 250 73 0 chr6 108374439 108374507 -80905047 - L2 LINE L2 -954 2360 2288 8406 38 9 0 chr6 108374759 108376559 -80902995 + L1PA4 LINE L1 4348 6155 0 5902 111 41 1 chr6 108376565 108377572 -80901982 + L1PA10 LINE L1 5103 6148 -20 315 0 0 0 chr6 108377572 108377607 -80901947 + (CA)n Simple_repeat Simple_repeat 2 36 0 5902 111 41 1 chr6 108377607 108377624 -80901930 + L1PA10 LINE L1 6148 6163 -5 23 33 0 0 chr6 108379376 108379406 -80900148 + AT_rich Low_complexity Low_complexity 1 30 0 3742 202 48 59 chr6 108379854 108380802 -80898752 - L1MC3 LINE L1 -1 7784 6848 2552 154 16 7 chr6 108380802 108381251 -80898303 - L1PA16 LINE L1 -8 6158 5706 3742 202 48 59 chr6 108381251 108381371 -80898183 - L1MC3 LINE L1 -937 6848 6728 1713 305 51 17 chr6 108381694 108382297 -80897257 - MLT1E3 LTR MaLR 0 624 1 2279 109 3 0 chr6 108386981 108387292 -80892262 + AluSp SINE Alu 2 313 0 22 0 0 0 chr6 108387435 108387457 -80892097 + AT_rich Low_complexity Low_complexity 1 22 0 237 338 39 0 chr6 108387624 108387701 -80891853 + MER5B DNA MER1_type 10 89 -89 25 65 0 0 chr6 108388138 108388184 -80891370 + AT_rich Low_complexity Low_complexity 1 46 0 816 175 0 0 chr6 108390563 108390723 -80888831 + CT-rich Low_complexity Low_complexity 2 161 0 358 183 43 0 chr6 108390841 108390956 -80888598 + (TA)n Simple_repeat Simple_repeat 2 121 0 333 0 0 0 chr6 108391508 108391545 -80888009 + (TA)n Simple_repeat Simple_repeat 1 37 0 2096 132 0 0 chr6 108391546 108391849 -80887705 - AluSg SINE Alu -7 303 1 247 289 122 16 chr6 108391966 108392112 -80887442 - MIR SINE MIR -64 144 34 44085 35 1 0 chr6 108392402 108398546 -80881008 + L1PA2 LINE L1 3 6151 -4 23 0 0 0 chr6 108398546 108398569 -80880985 + AT_rich Low_complexity Low_complexity 1 23 0 1322 294 88 36 chr6 108398569 108399253 -80880301 + L1ME3A LINE L1 5452 6170 0 231 159 45 80 chr6 108399300 108399388 -80880166 + L1MC5 LINE L1 7643 7727 -234 22 0 0 0 chr6 108399425 108399447 -80880107 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr6 108399524 108399567 -80879987 + AT_rich Low_complexity Low_complexity 1 43 0 479 301 48 71 chr6 108399600 108399952 -80879602 + L2 LINE L2 2376 2719 -595 255 61 0 0 chr6 108400174 108400207 -80879347 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 22 56 0 0 chr6 108401483 108401519 -80878035 + AT_rich Low_complexity Low_complexity 1 36 0 378 0 0 0 chr6 108402678 108402720 -80876834 + (TG)n Simple_repeat Simple_repeat 1 42 0 497 315 98 49 chr6 108404259 108404564 -80874990 + L2 LINE L2 82 401 -2913 224 77 26 0 chr6 108404564 108404603 -80874951 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 914 54 0 0 chr6 108404603 108404714 -80874840 - L1PA4 LINE L1 -24 6131 6021 275 284 26 26 chr6 108404714 108404830 -80874724 + L2 LINE L2 406 521 -2793 1715 206 27 3 chr6 108404910 108405245 -80874309 + MER2 DNA MER2_type 2 344 0 2052 125 0 13 chr6 108405307 108405611 -80873943 - AluSx SINE Alu -12 300 1 685 298 105 28 chr6 108405735 108406088 -80873466 + L2 LINE L2 1274 1653 -1661 30 27 0 0 chr6 108406387 108406424 -80873130 + AT_rich Low_complexity Low_complexity 1 37 0 320 272 22 60 chr6 108406525 108406793 -80872761 - L1M4 LINE L1 -2167 3979 3722 501 210 0 25 chr6 108407276 108407395 -80872159 - L1MB8 LINE L1 0 6178 6063 584 177 23 15 chr6 108407402 108407532 -80872022 - L1MB8 LINE L1 -398 5780 5650 25 51 0 0 chr6 108408075 108408114 -80871440 + AT_rich Low_complexity Low_complexity 1 39 0 261 214 145 28 chr6 108408426 108408571 -80870983 + L1ME LINE L1 5124 5285 -861 21 0 0 0 chr6 108408668 108408689 -80870865 + AT_rich Low_complexity Low_complexity 1 21 0 230 157 43 86 chr6 108408849 108408895 -80870659 + L1ME LINE L1 5734 5778 -384 2132 141 141 0 chr6 108408895 108409270 -80870284 + MSTA LTR MaLR 1 428 0 230 157 43 86 chr6 108409270 108409293 -80870261 + L1ME LINE L1 5778 5800 -362 280 125 0 0 chr6 108409368 108409408 -80870146 - MLT1D LTR MaLR -437 68 29 21 0 0 0 chr6 108409428 108409449 -80870105 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 108409896 108409925 -80869629 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr6 108410002 108410038 -80869516 + AT_rich Low_complexity Low_complexity 1 36 0 1548 220 28 28 chr6 108410145 108410508 -80869046 - MLT1A2 LTR MaLR -11 363 1 27 49 0 0 chr6 108414352 108414393 -80865161 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr6 108414885 108414906 -80864648 + AT_rich Low_complexity Low_complexity 1 21 0 330 328 151 13 chr6 108415568 108415806 -80863748 - L2 LINE L2 -461 2853 2583 648 280 57 17 chr6 108415837 108416012 -80863542 - MER5A DNA MER1_type -6 183 2 763 152 49 22 chr6 108416082 108416266 -80863288 + MER53 DNA DNA 1 189 0 265 309 64 18 chr6 108416321 108416431 -80863123 - L1MB8 LINE L1 -566 5598 5484 65 0 0 0 chr6 108416788 108416853 -80862701 + AT_rich Low_complexity Low_complexity 1 65 0 298 336 86 0 chr6 108416988 108417128 -80862426 - L1ME LINE L1 -445 5717 5566 756 214 100 63 chr6 108417143 108417604 -80861950 - L1M4 LINE L1 -3316 2830 2243 27 29 0 0 chr6 108418369 108418403 -80861151 + AT_rich Low_complexity Low_complexity 1 34 0 381 95 11 53 chr6 108418480 108418575 -80860979 + (TA)n Simple_repeat Simple_repeat 1 91 0 265 286 30 53 chr6 108418743 108418900 -80860654 - L1ME LINE L1 -1929 4217 4062 28 0 0 0 chr6 108418978 108419006 -80860548 + AT_rich Low_complexity Low_complexity 1 28 0 691 290 88 13 chr6 108419054 108419292 -80860262 - LTR40a LTR ERVL 0 519 264 41704 41 22 1 chr6 108419368 108425397 -80854157 + L1PA3 LINE L1 1 6155 0 238 67 44 0 chr6 108425424 108425469 -80854085 + A-rich Low_complexity Low_complexity 2 48 0 962 195 29 139 chr6 108427523 108427808 -80851746 - MLT1C LTR MaLR -67 400 166 1931 149 50 14 chr6 108427808 108428170 -80851384 - THE1C LTR MaLR 0 375 1 962 195 29 139 chr6 108428170 108428264 -80851290 - MLT1C LTR MaLR -301 166 63 24 53 0 0 chr6 108429512 108429550 -80850004 + AT_rich Low_complexity Low_complexity 1 38 0 * 972 235 88 77 chr6 108429513 108430172 -80849382 - L1MC5 LINE L1 -25 7936 7271 2422 238 54 34 chr6 108431293 108432212 -80847342 + L1MC/D LINE L1 4398 5357 -894 2785 10 0 3 chr6 108432212 108432524 -80847030 + AluYa5 SINE Alu 1 311 0 2422 238 54 34 chr6 108432524 108432672 -80846882 + L1MC/D LINE L1 5357 5501 -750 183 292 0 31 chr6 108432730 108432795 -80846759 + MIR SINE MIR 117 179 -83 1215 207 123 4 chr6 108434288 108434626 -80844928 - MER47B DNA MER2_type 0 418 1 5710 173 39 21 chr6 108434693 108434866 -80844688 - Tigger3b DNA MER2_type -1823 1205 1037 2000 137 0 7 chr6 108434866 108435165 -80844389 + AluSx SINE Alu 1 297 -15 5710 173 39 21 chr6 108435165 108436174 -80843380 - Tigger3b DNA MER2_type -1991 1037 2 27 0 0 0 chr6 108436779 108436806 -80842748 + AT_rich Low_complexity Low_complexity 1 27 0 42987 45 6 3 chr6 108437278 108442682 -80836872 - L1P LINE L1 -733 5422 3 253 348 97 38 chr6 108443466 108443756 -80835798 + L2 LINE L2 2062 2368 -946 21 36 0 0 chr6 108443856 108443884 -80835670 + AT_rich Low_complexity Low_complexity 1 28 0 1309 67 28 0 chr6 108443913 108444092 -80835462 - L1PA4 LINE L1 -3 6152 5969 22 0 0 0 chr6 108444996 108445018 -80834536 + AT_rich Low_complexity Low_complexity 1 22 0 388 282 68 10 chr6 108445072 108445236 -80834318 - MIR SINE MIR -14 248 70 511 303 90 32 chr6 108445595 108445783 -80833771 - MIR SINE MIR -51 211 13 39 60 0 0 chr6 108445817 108445884 -80833670 + AT_rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr6 108446727 108446751 -80832803 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr6 108447354 108447380 -80832174 + AT_rich Low_complexity Low_complexity 1 26 0 32 0 0 0 chr6 108447799 108447831 -80831723 + AT_rich Low_complexity Low_complexity 1 32 0 255 321 48 0 chr6 108449697 108449781 -80829773 - L2 LINE L2 -6 3307 3220 1039 276 104 36 chr6 108450463 108451069 -80828485 - L1ME1 LINE L1 -169 5997 5351 252 258 39 8 chr6 108451113 108451241 -80828313 + (TA)n Simple_repeat Simple_repeat 2 133 0 563 259 121 40 chr6 108451241 108451589 -80827965 - L1ME1 LINE L1 -886 5260 4885 665 188 32 19 chr6 108451598 108451752 -80827802 - L1MC1 LINE L1 -4 6609 6454 1177 29 0 0 chr6 108451757 108451925 -80827629 + L1PA4 LINE L1 6001 6168 0 7633 262 35 14 chr6 108451936 108455615 -80823939 - L1MC1 LINE L1 -162 6451 2593 3416 175 14 3 chr6 108455611 108456240 -80823314 - L1MA4 LINE L1 -37 6263 5628 * 721 182 127 55 chr6 108456260 108456441 -80823113 - L1MC1 LINE L1 -6217 209 16 678 258 121 24 chr6 108456459 108456707 -80822847 - L1M4 LINE L1 -1254 5390 5119 1979 275 80 39 chr6 108456711 108456950 -80822604 - L1MEc LINE L1 -2637 4007 3779 2301 56 0 7 chr6 108456950 108457265 -80822289 - AluY SINE Alu 0 313 1 1979 275 80 39 chr6 108457265 108457567 -80821987 - L1MEc LINE L1 -2865 3779 3491 1484 150 79 14 chr6 108457567 108457847 -80821707 - AluJb SINE Alu -2 310 13 1979 275 80 39 chr6 108457847 108459258 -80820296 - L1MEc LINE L1 -3153 3491 2005 429 265 79 9 chr6 108459442 108459772 -80819782 - L1MEc LINE L1 -4938 1611 1329 25 75 0 0 chr6 108459830 108459883 -80819671 + AT_rich Low_complexity Low_complexity 1 53 0 409 279 63 37 chr6 108460313 108460503 -80819051 - L1MEc LINE L1 -6128 697 503 222 278 0 0 chr6 108460559 108460613 -80818941 + (ATG)n Simple_repeat Simple_repeat 3 56 0 22 88 0 0 chr6 108462952 108463009 -80816545 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr6 108464390 108464411 -80815143 + AT_rich Low_complexity Low_complexity 1 21 0 226 389 22 61 chr6 108464634 108464814 -80814740 + L2 LINE L2 3084 3256 -16 1953 195 44 7 chr6 108465956 108466367 -80813187 - MSTB LTR MaLR 0 426 1 188 111 28 0 chr6 108467867 108467903 -80811651 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 283 293 78 96 chr6 108469304 108469471 -80810083 - MIR SINE MIR -5 257 94 18833 169 49 13 chr6 108470168 108473663 -80805891 + L1MA1 LINE L1 10 3631 -3934 793 203 11 0 chr6 108473656 108473833 -80805721 + L1M1 LINE L1 5088 5266 -2299 * 558 196 45 8 chr6 108473871 108474004 -80805550 + L1MA1 LINE L1 3702 3839 -3726 6871 134 15 2 chr6 108474044 108475412 -80804142 + L1MA1 LINE L1 6328 7717 -4 31 0 0 0 chr6 108475412 108475443 -80804111 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr6 108476482 108476506 -80803048 + (A)n Simple_repeat Simple_repeat 1 24 0 218 319 14 0 chr6 108476624 108476693 -80802861 + MIR SINE MIR 101 170 -92 24 0 0 0 chr6 108476889 108476913 -80802641 + AT_rich Low_complexity Low_complexity 1 24 0 286 185 25 12 chr6 108477573 108477654 -80801900 + CT-rich Low_complexity Low_complexity 4 85 0 1400 248 56 34 chr6 108478397 108479021 -80800533 - L1M4 LINE L1 -1292 4854 4217 4803 22 0 0 chr6 108479027 108479606 -80799948 - L1PA3 LINE L1 -743 5403 4825 * 6756 16 0 0 chr6 108479605 108480379 -80799175 + L1PA3 LINE L1 5382 6155 0 268 347 19 42 chr6 108480397 108480613 -80798941 - L1M4 LINE L1 -1918 4228 4018 267 173 0 0 chr6 108480669 108480721 -80798833 + (TG)n Simple_repeat Simple_repeat 1 52 0 4640 256 20 19 chr6 108481090 108482225 -80797329 - L1PA12 LINE L1 -6443 1138 2 257 365 8 0 chr6 108482745 108482871 -80796683 + L1M3e LINE L1 62 188 -6903 2318 278 9 28 chr6 108484223 108484982 -80794572 + L1M3e LINE L1 1592 2375 -4723 2325 63 0 30 chr6 108484982 108485323 -80794231 + AluY SINE Alu 1 332 0 2318 278 9 28 chr6 108485323 108485504 -80794050 + L1M3e LINE L1 2375 2558 -4540 1679 202 20 14 chr6 108485514 108485866 -80793688 + MER47A DNA MER2_type 13 366 0 1733 284 73 30 chr6 108485868 108487148 -80792406 + L1M1 LINE L1 2616 4067 -3498 5301 210 19 8 chr6 108487183 108489257 -80790297 + L1PA15 LINE L1 4089 6157 -8 22 0 0 0 chr6 108489258 108489280 -80790274 + AT_rich Low_complexity Low_complexity 1 22 0 292 298 38 72 chr6 108489286 108489348 -80790206 + L1ME4a LINE L1 5642 5705 -416 1897 149 4 0 chr6 108489348 108489656 -80789898 - AluSx SINE Alu 0 311 3 292 298 38 72 chr6 108489656 108489853 -80789701 + L1ME4a LINE L1 5705 5894 -227 25 65 0 0 chr6 108489866 108489912 -80789642 + AT_rich Low_complexity Low_complexity 1 46 0 689 214 0 0 chr6 108489923 108490054 -80789500 + L1M1 LINE L1 4190 4320 -3245 614 228 7 7 chr6 108490047 108490192 -80789362 + L1MA7 LINE L1 2438 2582 -4914 * 385 258 0 10 chr6 108490204 108490301 -80789253 - L1MA7 LINE L1 -3249 4316 4221 1865 240 90 23 chr6 108490315 108491193 -80788361 + L1MA7 LINE L1 4322 5341 -2224 * 2073 180 18 13 chr6 108491179 108491746 -80787808 + L1MA7 LINE L1 6534 7106 -604 * 41719 41 22 1 chr6 108491745 108497770 -80781784 + L1PA2 LINE L1 3 6155 0 619 178 17 8 chr6 108497768 108497886 -80781668 + L1MA7 LINE L1 7094 7212 -498 * 233 132 0 19 chr6 108497897 108497950 -80781604 + LTR66 LTR ERVL 386 437 -173 629 143 0 10 chr6 108497974 108498072 -80781482 + MER4A LTR ERV1 2 98 -566 1598 146 162 77 chr6 108498073 108498437 -80781117 + MER4A LTR ERV1 262 656 -8 1886 223 31 13 chr6 108498465 108498767 -80780787 + L1MA7 LINE L1 7202 7518 -192 2917 3 0 0 chr6 108498767 108499085 -80780469 + AluYb8 SINE Alu 1 318 0 1886 223 31 13 chr6 108499085 108499258 -80780296 + L1MA7 LINE L1 7518 7686 -24 1523 297 36 40 chr6 108500540 108501308 -80778246 + L1ME LINE L1 11 775 -5295 25 31 0 0 chr6 108501342 108501374 -80778180 + AT_rich Low_complexity Low_complexity 1 32 0 208 380 0 0 chr6 108501391 108501470 -80778084 - MIR SINE MIR -164 98 20 181 311 40 0 chr6 108501491 108501565 -80777989 - MIR SINE MIR -91 171 95 231 146 0 24 chr6 108504179 108504220 -80775334 + MLT1I LTR MaLR 369 408 -1 1303 32 0 0 chr6 108504232 108504388 -80775166 + L1PA4 LINE L1 5999 6154 -1 198 0 0 0 chr6 108506621 108506643 -80772911 + (CA)n Simple_repeat Simple_repeat 2 23 0 432 184 5 189 chr6 108506658 108506843 -80772711 - FRAM SINE Alu -11 155 5 544 68 86 0 chr6 108506973 108507136 -80772418 + (TA)n Simple_repeat Simple_repeat 2 178 0 30 0 0 0 chr6 108507136 108507166 -80772388 + AT_rich Low_complexity Low_complexity 1 30 0 498 70 86 5 chr6 108507166 108507524 -80772030 + (TA)n Simple_repeat Simple_repeat 1 386 0 677 60 16 55 chr6 108507524 108507706 -80771848 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 23 0 0 0 chr6 108507706 108507729 -80771825 + AT_rich Low_complexity Low_complexity 1 23 0 466 298 35 0 chr6 108507732 108507873 -80771681 + L1MEc LINE L1 129 274 -6122 862 260 61 13 chr6 108508101 108508332 -80771222 + LTR40b LTR ERVL 218 459 -3 2020 213 83 42 chr6 108508394 108509187 -80770367 + L1ME1 LINE L1 5094 5919 -247 37 52 0 0 chr6 108510190 108510248 -80769306 + AT_rich Low_complexity Low_complexity 1 58 0 296 253 0 0 chr6 108510292 108510371 -80769183 - L1M4 LINE L1 -5134 1408 1330 * 1954 244 36 7 chr6 108510362 108510923 -80768631 - L1MB7 LINE L1 -56 6128 5552 1771 272 67 24 chr6 108510973 108512127 -80767427 - L1M4c LINE L1 -4589 2057 875 29 0 0 0 chr6 108512682 108512711 -80766843 + AT_rich Low_complexity Low_complexity 1 29 0 2131 220 19 38 chr6 108512840 108513421 -80766133 - L1MD1 LINE L1 -356 5886 5317 374 340 27 69 chr6 108513503 108513838 -80765716 + MARNA DNA Mariner 128 448 -138 192 111 0 0 chr6 108513901 108513937 -80765617 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 222 37 0 0 chr6 108514142 108514169 -80765385 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 24 32 0 0 chr6 108514169 108514200 -80765354 + AT_rich Low_complexity Low_complexity 1 31 0 5945 84 11 4 chr6 108514200 108515451 -80764103 - L1PA8A LINE L1 0 6131 4855 1000 178 43 154 chr6 108515525 108515833 -80763721 - L1MDa LINE L1 -4043 2497 2257 14638 188 31 0 chr6 108515833 108517814 -80761740 + L1PA13 LINE L1 2266 4185 -1978 2477 52 0 3 chr6 108517814 108518121 -80761433 + AluY SINE Alu 3 308 -3 14638 188 31 0 chr6 108518121 108520012 -80759542 + L1PA13 LINE L1 4185 6160 -3 1000 178 43 154 chr6 108520012 108520170 -80759384 - L1MDa LINE L1 -4283 2257 2083 948 202 87 0 chr6 108520178 108520386 -80759168 - Tigger2 DNA MER2_type -1 2717 2492 25 65 0 0 chr6 108520731 108520777 -80758777 + AT_rich Low_complexity Low_complexity 1 46 0 816 175 0 0 chr6 108523156 108523316 -80756238 + CT-rich Low_complexity Low_complexity 2 161 0 358 183 43 0 chr6 108523434 108523549 -80756005 + (TA)n Simple_repeat Simple_repeat 2 121 0 333 0 0 0 chr6 108524101 108524138 -80755416 + (TA)n Simple_repeat Simple_repeat 2 38 0 2096 132 0 0 chr6 108524139 108524442 -80755112 - AluSg SINE Alu -7 303 1 247 289 122 16 chr6 108524559 108524705 -80754849 - MIR SINE MIR -64 144 34 44085 35 1 0 chr6 108524995 108531139 -80748415 + L1PA2 LINE L1 3 6151 -4 23 0 0 0 chr6 108531139 108531162 -80748392 + AT_rich Low_complexity Low_complexity 1 23 0 1322 294 88 36 chr6 108531162 108531846 -80747708 + L1ME3A LINE L1 5452 6170 0 231 159 45 80 chr6 108531893 108531981 -80747573 + L1MC5 LINE L1 7643 7727 -234 22 0 0 0 chr6 108532018 108532040 -80747514 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr6 108532117 108532160 -80747394 + AT_rich Low_complexity Low_complexity 1 43 0 479 301 48 71 chr6 108532193 108532545 -80747009 + L2 LINE L2 2376 2719 -595 255 61 0 0 chr6 108532767 108532800 -80746754 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 22 56 0 0 chr6 108534076 108534112 -80745442 + AT_rich Low_complexity Low_complexity 1 36 0 378 0 0 0 chr6 108535271 108535313 -80744241 + (TG)n Simple_repeat Simple_repeat 1 42 0 497 315 98 49 chr6 108536852 108537157 -80742397 + L2 LINE L2 82 401 -2913 224 77 26 0 chr6 108537157 108537196 -80742358 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 914 54 0 0 chr6 108537196 108537307 -80742247 - L1PA4 LINE L1 -24 6131 6021 275 284 26 26 chr6 108537307 108537423 -80742131 + L2 LINE L2 406 521 -2793 1715 206 27 3 chr6 108537503 108537838 -80741716 + MER2 DNA MER2_type 2 344 0 2052 125 0 13 chr6 108537900 108538204 -80741350 - AluSx SINE Alu -12 300 1 685 298 105 28 chr6 108538328 108538681 -80740873 + L2 LINE L2 1274 1653 -1661 30 27 0 0 chr6 108538980 108539017 -80740537 + AT_rich Low_complexity Low_complexity 1 37 0 320 272 22 60 chr6 108539118 108539386 -80740168 - L1M4 LINE L1 -2167 3979 3722 501 210 0 25 chr6 108539869 108539988 -80739566 - L1MB8 LINE L1 0 6178 6063 584 177 23 15 chr6 108539995 108540125 -80739429 - L1MB8 LINE L1 -398 5780 5650 25 51 0 0 chr6 108540668 108540707 -80738847 + AT_rich Low_complexity Low_complexity 1 39 0 261 214 145 28 chr6 108541019 108541164 -80738390 + L1ME LINE L1 5124 5285 -861 21 0 0 0 chr6 108541261 108541282 -80738272 + AT_rich Low_complexity Low_complexity 1 21 0 230 157 43 86 chr6 108541442 108541488 -80738066 + L1ME LINE L1 5734 5778 -384 2132 141 141 0 chr6 108541488 108541863 -80737691 + MSTA LTR MaLR 1 428 0 230 157 43 86 chr6 108541863 108541886 -80737668 + L1ME LINE L1 5778 5800 -362 280 125 0 0 chr6 108541961 108542001 -80737553 - MLT1D LTR MaLR -437 68 29 21 0 0 0 chr6 108542021 108542042 -80737512 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 108542489 108542518 -80737036 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr6 108542595 108542631 -80736923 + AT_rich Low_complexity Low_complexity 1 36 0 1548 220 28 28 chr6 108542738 108543101 -80736453 - MLT1A2 LTR MaLR -11 363 1 27 49 0 0 chr6 108546945 108546986 -80732568 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr6 108547478 108547499 -80732055 + AT_rich Low_complexity Low_complexity 1 21 0 330 328 151 13 chr6 108548161 108548399 -80731155 - L2 LINE L2 -461 2853 2583 648 280 57 17 chr6 108548430 108548605 -80730949 - MER5A DNA MER1_type -6 183 2 763 152 49 22 chr6 108548675 108548859 -80730695 + MER53 DNA DNA 1 189 0 265 309 64 18 chr6 108548914 108549024 -80730530 - L1MB8 LINE L1 -566 5598 5484 65 0 0 0 chr6 108549381 108549446 -80730108 + AT_rich Low_complexity Low_complexity 1 65 0 298 336 86 0 chr6 108549581 108549721 -80729833 - L1ME LINE L1 -445 5717 5566 756 214 100 63 chr6 108549736 108550197 -80729357 - L1M4 LINE L1 -3316 2830 2243 27 29 0 0 chr6 108550962 108550996 -80728558 + AT_rich Low_complexity Low_complexity 1 34 0 381 95 11 53 chr6 108551073 108551168 -80728386 + (TA)n Simple_repeat Simple_repeat 1 91 0 265 286 30 53 chr6 108551336 108551493 -80728061 - L1ME LINE L1 -1929 4217 4062 28 0 0 0 chr6 108551571 108551599 -80727955 + AT_rich Low_complexity Low_complexity 1 28 0 691 290 88 13 chr6 108551647 108551885 -80727669 - LTR40a LTR ERVL 0 519 264 41704 41 22 1 chr6 108551961 108557990 -80721564 + L1PA3 LINE L1 1 6155 0 238 67 44 0 chr6 108558017 108558062 -80721492 + A-rich Low_complexity Low_complexity 2 48 0 962 195 29 139 chr6 108560116 108560401 -80719153 - MLT1C LTR MaLR -67 400 166 1931 149 50 14 chr6 108560401 108560763 -80718791 - THE1C LTR MaLR 0 375 1 962 195 29 139 chr6 108560763 108560857 -80718697 - MLT1C LTR MaLR -301 166 63 972 235 88 77 chr6 108562106 108562765 -80716789 - L1MC5 LINE L1 -25 7936 7271 2422 238 54 34 chr6 108563886 108564805 -80714749 + L1MC/D LINE L1 4398 5357 -894 2785 10 0 3 chr6 108564805 108565117 -80714437 + AluYa5 SINE Alu 1 311 0 2422 238 54 34 chr6 108565117 108565265 -80714289 + L1MC/D LINE L1 5357 5501 -750 183 292 0 31 chr6 108565323 108565388 -80714166 + MIR SINE MIR 117 179 -83 1215 207 123 4 chr6 108566881 108567219 -80712335 - MER47B DNA MER2_type 0 418 1 5710 173 39 21 chr6 108567286 108567459 -80712095 - Tigger3b DNA MER2_type -1823 1205 1037 2000 137 0 7 chr6 108567459 108567758 -80711796 + AluSx SINE Alu 1 297 -15 5710 173 39 21 chr6 108567758 108568767 -80710787 - Tigger3b DNA MER2_type -1991 1037 2 27 0 0 0 chr6 108569372 108569399 -80710155 + AT_rich Low_complexity Low_complexity 1 27 0 42987 45 6 3 chr6 108569871 108575275 -80704279 - L1P LINE L1 -733 5422 3 253 348 97 38 chr6 108576059 108576349 -80703205 + L2 LINE L2 2062 2368 -946 21 36 0 0 chr6 108576449 108576477 -80703077 + AT_rich Low_complexity Low_complexity 1 28 0 1309 67 28 0 chr6 108576506 108576685 -80702869 - L1PA4 LINE L1 -3 6152 5969 22 0 0 0 chr6 108577589 108577611 -80701943 + AT_rich Low_complexity Low_complexity 1 22 0 388 282 68 10 chr6 108577665 108577829 -80701725 - MIR SINE MIR -14 248 70 511 303 90 32 chr6 108578188 108578376 -80701178 - MIR SINE MIR -51 211 13 39 60 0 0 chr6 108578410 108578477 -80701077 + AT_rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr6 108579320 108579344 -80700210 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr6 108579947 108579973 -80699581 + AT_rich Low_complexity Low_complexity 1 26 0 32 0 0 0 chr6 108580392 108580424 -80699130 + AT_rich Low_complexity Low_complexity 1 32 0 255 321 48 0 chr6 108582290 108582374 -80697180 - L2 LINE L2 -6 3307 3220 1039 276 104 36 chr6 108583056 108583662 -80695892 - L1ME1 LINE L1 -169 5997 5351 252 258 39 8 chr6 108583706 108583834 -80695720 + (TA)n Simple_repeat Simple_repeat 2 133 0 563 259 121 40 chr6 108583834 108584182 -80695372 - L1ME1 LINE L1 -886 5260 4885 665 188 32 19 chr6 108584191 108584345 -80695209 - L1MC1 LINE L1 -4 6609 6454 1177 29 0 0 chr6 108584350 108584518 -80695036 + L1PA4 LINE L1 6001 6168 0 7633 262 35 14 chr6 108584529 108588208 -80691346 - L1MC1 LINE L1 -162 6451 2593 3416 175 14 3 chr6 108588204 108588833 -80690721 - L1MA4 LINE L1 -37 6263 5628 * 721 182 127 55 chr6 108588853 108589034 -80690520 - L1MC1 LINE L1 -6217 209 16 678 258 121 24 chr6 108589052 108589300 -80690254 - L1M4 LINE L1 -1254 5390 5119 1979 275 80 39 chr6 108589304 108589543 -80690011 - L1MEc LINE L1 -2637 4007 3779 2301 56 0 7 chr6 108589543 108589858 -80689696 - AluY SINE Alu 0 313 1 1979 275 80 39 chr6 108589858 108590160 -80689394 - L1MEc LINE L1 -2865 3779 3491 1484 150 79 14 chr6 108590160 108590440 -80689114 - AluJb SINE Alu -2 310 13 1979 275 80 39 chr6 108590440 108591851 -80687703 - L1MEc LINE L1 -3153 3491 2005 429 265 79 9 chr6 108592035 108592365 -80687189 - L1MEc LINE L1 -4938 1611 1329 25 75 0 0 chr6 108592423 108592476 -80687078 + AT_rich Low_complexity Low_complexity 1 53 0 409 279 63 37 chr6 108592906 108593096 -80686458 - L1MEc LINE L1 -6128 697 503 222 278 0 0 chr6 108593152 108593206 -80686348 + (ATG)n Simple_repeat Simple_repeat 3 56 0 22 88 0 0 chr6 108595545 108595602 -80683952 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr6 108596983 108597004 -80682550 + AT_rich Low_complexity Low_complexity 1 21 0 226 389 22 61 chr6 108597227 108597407 -80682147 + L2 LINE L2 3084 3256 -16 1953 195 44 7 chr6 108598549 108598960 -80680594 - MSTB LTR MaLR 0 426 1 188 111 28 0 chr6 108600460 108600496 -80679058 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 283 293 78 96 chr6 108601897 108602064 -80677490 - MIR SINE MIR -5 257 94 18833 169 49 13 chr6 108602761 108606256 -80673298 + L1MA1 LINE L1 10 3631 -3934 793 203 11 0 chr6 108606249 108606426 -80673128 + L1M1 LINE L1 5088 5266 -2299 * 558 196 45 8 chr6 108606464 108606597 -80672957 + L1MA1 LINE L1 3702 3839 -3726 6871 134 15 2 chr6 108606637 108608005 -80671549 + L1MA1 LINE L1 6328 7717 -4 31 0 0 0 chr6 108608005 108608036 -80671518 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr6 108609075 108609099 -80670455 + (A)n Simple_repeat Simple_repeat 1 24 0 218 319 14 0 chr6 108609217 108609286 -80670268 + MIR SINE MIR 101 170 -92 24 0 0 0 chr6 108609482 108609506 -80670048 + AT_rich Low_complexity Low_complexity 1 24 0 286 185 25 12 chr6 108610166 108610247 -80669307 + CT-rich Low_complexity Low_complexity 4 85 0 1400 248 56 34 chr6 108610990 108611614 -80667940 - L1M4 LINE L1 -1292 4854 4217 4803 22 0 0 chr6 108611620 108612199 -80667355 - L1PA3 LINE L1 -743 5403 4825 6749 16 0 0 chr6 108612199 108612972 -80666582 + L1PA3 LINE L1 5382 6155 0 268 347 19 42 chr6 108612990 108613206 -80666348 - L1M4 LINE L1 -1918 4228 4018 267 173 0 0 chr6 108613262 108613314 -80666240 + (TG)n Simple_repeat Simple_repeat 1 52 0 1515 250 117 56 chr6 108613422 108614616 -80664938 - L1M4 LINE L1 -2273 3873 2607 1029 308 120 22 chr6 108614706 108614805 -80664749 + L2 LINE L2 2588 2676 -637 330 26 0 0 chr6 108614805 108614844 -80664710 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 2079 101 0 0 chr6 108614848 108615124 -80664430 - AluSx SINE Alu -36 276 1 1029 308 120 22 chr6 108615124 108615672 -80663882 + L2 LINE L2 2678 3313 0 245 329 0 0 chr6 108618015 108618094 -80661460 + L1MDa LINE L1 31 109 -6431 2421 56 0 10 chr6 108618106 108618411 -80661143 - AluY SINE Alu 0 311 10 1565 124 0 0 chr6 108618485 108618711 -80660843 + AluSg/x SINE Alu 84 309 -3 851 172 176 34 chr6 108618878 108619094 -80660460 + MSTA LTR MaLR 3 256 -172 2000 109 95 14 chr6 108619094 108619441 -80660113 - THE1C LTR MaLR 0 375 1 851 172 176 34 chr6 108619441 108619457 -80660097 + MSTA LTR MaLR 256 268 -160 6724 145 16 32 chr6 108619457 108620613 -80658941 - THE1C-int LTR MaLR -16 1564 428 6506 171 18 6 chr6 108620724 108621864 -80657690 + Tigger1 DNA MER2_type 1 1154 -1264 3854 170 6 0 chr6 108621874 108622528 -80657026 + Tigger1 DNA MER2_type 1761 2418 0 185 136 0 45 chr6 108622536 108622580 -80656974 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 186 133 0 0 chr6 108622724 108622754 -80656800 + (TTC)n Simple_repeat Simple_repeat 3 32 0 716 298 116 21 chr6 108622983 108623319 -80656235 + LTR33A LTR ERVL 67 437 -84 232 326 46 63 chr6 108623510 108623597 -80655957 - MIR SINE MIR -55 207 123 2373 59 0 13 chr6 108623597 108623904 -80655650 + AluY SINE Alu 1 303 -8 232 326 46 63 chr6 108623904 108623991 -80655563 - MIR SINE MIR -139 123 36 26 30 0 0 chr6 108623991 108624024 -80655530 + AT_rich Low_complexity Low_complexity 1 33 0 204 220 0 165 chr6 108624783 108624892 -80654662 + MIR SINE MIR 122 212 -50 27 29 0 0 chr6 108625170 108625204 -80654350 + AT_rich Low_complexity Low_complexity 1 34 0 183 42 0 0 chr6 108626400 108626424 -80653130 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1013 73 0 0 chr6 108626425 108626549 -80653005 - AluY SINE Alu -187 124 1 260 198 178 30 chr6 108626654 108626755 -80652799 - MLT1C LTR MaLR -314 153 38 725 269 34 6 chr6 108627416 108627591 -80651963 + MER58A DNA MER1_type 28 207 -17 18887 199 36 21 chr6 108627762 108628958 -80650596 - L1P LINE L1 -1052 5094 3918 2791 10 0 0 chr6 108628958 108629265 -80650289 - AluYb8 SINE Alu -11 307 1 18887 199 36 21 chr6 108629265 108632409 -80647145 - L1P LINE L1 -2228 3918 688 201 232 0 54 chr6 108834175 108834231 -80445323 + MIR SINE MIR 97 149 -59 23 0 0 0 chr6 108834948 108834971 -80444583 + AT_rich Low_complexity Low_complexity 1 23 0 353 301 88 0 chr6 108836971 108837084 -80442470 + L2 LINE L2 3182 3304 -9 2756 102 0 0 chr6 108837258 108837621 -80441933 - THE1B LTR MaLR -1 363 1 4282 116 5 0 chr6 108837621 108838234 -80441320 - THE1B-int LTR MaLR 0 1580 965 5238 106 3 0 chr6 108838234 108838972 -80440582 + HERVL LTR ERVL 2705 3444 -2210 1072 146 32 10 chr6 108838972 108839179 -80440375 + MLT2A2 LTR ERVL 293 453 0 2049 113 26 16 chr6 108839180 108839491 -80440063 - THE1B LTR MaLR -50 314 1 27 29 0 0 chr6 108839543 108839577 -80439977 + AT_rich Low_complexity Low_complexity 1 34 0 280 155 12 131 chr6 108840877 108840961 -80438593 - LTR50 LTR ERVL -721 74 1 305 345 121 0 chr6 108841522 108841638 -80437916 + L2 LINE L2 3129 3258 -14 245 95 0 24 chr6 108841671 108841713 -80437841 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 23 86 0 0 chr6 108841742 108841800 -80437754 + AT_rich Low_complexity Low_complexity 1 58 0 2076 122 26 50 chr6 108842545 108842929 -80436625 + THE1C LTR MaLR 1 375 0 1566 279 76 54 chr6 108843328 108844541 -80435013 - HAL1b LINE L1 -41 1307 68 207 194 32 0 chr6 108845138 108845231 -80434323 + CT-rich Low_complexity Low_complexity 1 96 0 1198 240 3 24 chr6 108846485 108846773 -80432781 + AluJo SINE Alu 1 282 -30 1096 246 54 23 chr6 108846937 108847492 -80432062 - MLT1E1 LTR MaLR 0 654 1 580 314 62 43 chr6 108847541 108847866 -80431688 + MLT1I LTR MaLR 51 381 -28 540 214 38 0 chr6 108848011 108848142 -80431412 + FLAM_A SINE Alu 6 141 -1 194 0 0 37 chr6 108852138 108852165 -80427389 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 2643 26 0 0 chr6 108853302 108853612 -80425942 + L1PA3 LINE L1 5845 6154 -1 833 242 0 16 chr6 108853732 108853922 -80425632 + MER5A DNA MER1_type 1 187 -2 24 53 0 0 chr6 108853970 108854008 -80425546 + AT_rich Low_complexity Low_complexity 1 38 0 2123 113 0 28 chr6 108855143 108855462 -80424092 + AluSq SINE Alu 1 310 -3 611 198 0 33 chr6 108855589 108855710 -80423844 - FLAM_C SINE Alu -14 129 13 509 285 65 27 chr6 108856414 108856674 -80422880 - MLT1L LTR MaLR -226 389 120 428 287 40 27 chr6 108857135 108857285 -80422269 + MER5B DNA MER1_type 26 177 -1 269 298 229 45 chr6 108857343 108857679 -80421875 - L2 LINE L2 -4 3309 2912 23 33 0 0 chr6 108858687 108858717 -80420837 + AT_rich Low_complexity Low_complexity 1 30 0 57 112 0 0 chr6 108860245 108860512 -80419042 + AT_rich Low_complexity Low_complexity 1 267 0 1563 134 0 0 chr6 108861166 108861390 -80418164 - AluSc SINE Alu -15 294 71 2430 69 3 0 chr6 108861390 108861692 -80417862 - AluY SINE Alu -6 305 1 24 85 0 0 chr6 108861697 108861756 -80417798 + AT_rich Low_complexity Low_complexity 1 59 0 1686 20 0 0 chr6 108863982 108864183 -80415371 - L1PA2 LINE L1 -1 6154 5954 188 279 38 76 chr6 108864815 108864894 -80414660 - MIR3 SINE MIR -32 176 101 24 53 0 0 chr6 108865896 108865934 -80413620 + AT_rich Low_complexity Low_complexity 1 38 0 1446 325 96 35 chr6 108866181 108867247 -80412307 - L2 LINE L2 -73 3240 2112 603 272 7 0 chr6 108868717 108868853 -80410701 + MIR SINE MIR 5 141 -121 185 293 103 78 chr6 108869941 108870057 -80409497 + MIR SINE MIR 20 138 -70 190 73 49 0 chr6 108871971 108872012 -80407542 + (TA)n Simple_repeat Simple_repeat 1 43 0 195 69 0 0 chr6 108872445 108872474 -80407080 + (CA)n Simple_repeat Simple_repeat 2 30 0 258 188 0 0 chr6 108873152 108873200 -80406354 - L2 LINE L2 -5 3308 3261 187 227 68 0 chr6 108873166 108873210 -80406344 - MIR SINE MIR -13 249 203 * 261 57 0 0 chr6 108873798 108873833 -80405721 + (CA)n Simple_repeat Simple_repeat 1 35 0 28 0 0 0 chr6 108874505 108874533 -80405021 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 108874744 108874773 -80404781 + AT_rich Low_complexity Low_complexity 1 29 0 308 286 151 4 chr6 108875500 108875659 -80403895 - MIR SINE MIR -9 253 63 1676 201 80 24 chr6 108876544 108876918 -80402636 + MSTD LTR MaLR 1 395 -1 266 347 51 10 chr6 108876987 108877085 -80402469 + MIR SINE MIR 41 142 -66 187 200 17 17 chr6 108877109 108877169 -80402385 + (TA)n Simple_repeat Simple_repeat 2 61 0 255 125 0 0 chr6 108877268 108877308 -80402246 + (TG)n Simple_repeat Simple_repeat 2 41 0 281 273 132 0 chr6 108877891 108878012 -80401542 + L2 LINE L2 2943 3079 -234 1526 253 78 29 chr6 108878194 108878880 -80400674 - L1ME2 LINE L1 -192 6041 5325 232 244 102 30 chr6 108879014 108879211 -80400343 - L1ME2 LINE L1 -954 5261 5051 * 950 282 91 13 chr6 108879195 108879659 -80399895 - L1ME2 LINE L1 -3036 3179 2680 1287 300 89 20 chr6 108879718 108880644 -80398910 - L1ME2 LINE L1 -4451 1945 917 234 270 22 11 chr6 108880765 108880854 -80398700 - L1ME2 LINE L1 -6211 185 96 21 0 0 0 chr6 108881070 108881091 -80398463 + AT_rich Low_complexity Low_complexity 1 21 0 210 336 75 19 chr6 108881680 108881787 -80397767 - L2 LINE L2 0 3313 3201 219 244 0 0 chr6 108881851 108881896 -80397658 + (CATA)n Simple_repeat Simple_repeat 4 48 0 184 318 71 0 chr6 108881896 108881981 -80397573 - MIR SINE MIR -58 204 114 256 295 54 23 chr6 108885392 108885521 -80394033 + MIR SINE MIR 84 216 -46 328 182 0 0 chr6 108885980 108886035 -80393519 + MER67D LTR ERV1 14 68 -446 1124 225 134 41 chr6 108886037 108886482 -80393072 + MER39 LTR ERV1 1 638 -69 4903 163 34 15 chr6 108886509 108887382 -80392172 - MER49 LTR ERV1 -33 890 1 1605 223 21 24 chr6 108887413 108887790 -80391764 + MER67D LTR ERV1 137 512 -2 212 296 254 7 chr6 108887909 108888051 -80391503 - MER5B DNA MER1_type 0 178 2 251 287 81 0 chr6 108888435 108888522 -80391032 + MER5A DNA MER1_type 13 106 -83 195 338 44 0 chr6 108888651 108888719 -80390835 + L2 LINE L2 3234 3304 -9 2083 115 14 0 chr6 108888767 108889062 -80390492 - AluSx SINE Alu -13 299 1 242 175 39 39 chr6 108889781 108889884 -80389670 + (TTATA)n Simple_repeat Simple_repeat 1 103 0 682 302 185 18 chr6 108889974 108890725 -80388829 + L2 LINE L2 2425 3312 -1 931 233 19 10 chr6 108890915 108891121 -80388433 - MER2 DNA MER2_type -136 209 2 21 36 0 0 chr6 108891507 108891535 -80388019 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 108891897 108891920 -80387634 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1209 237 30 10 chr6 108892354 108892704 -80386850 + MSTD LTR MaLR 1 392 -4 1585 191 0 14 chr6 108892854 108893137 -80386417 + AluJo SINE Alu 1 279 -33 195 69 0 0 chr6 108893139 108893168 -80386386 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr6 108893209 108893232 -80386322 + AT_rich Low_complexity Low_complexity 1 23 0 3596 38 9 9 chr6 108893825 108894269 -80385285 + L1PA4 LINE L1 5704 6147 -8 312 323 31 97 chr6 108895006 108895113 -80384441 + MIR SINE MIR 8 99 -163 2264 64 0 0 chr6 108895113 108895416 -80384138 + AluY SINE Alu 1 303 0 312 323 31 97 chr6 108895416 108895502 -80384052 + MIR SINE MIR 99 189 -73 24 0 0 0 chr6 108895533 108895557 -80383997 + AT_rich Low_complexity Low_complexity 1 24 0 35 41 0 0 chr6 108895766 108895815 -80383739 + AT_rich Low_complexity Low_complexity 1 49 0 13514 179 47 34 chr6 108896204 108896557 -80382997 - Tigger2 DNA MER2_type -3 2715 2368 2085 53 0 0 chr6 108896557 108896819 -80382735 + L1PA5 LINE L1 5890 6151 -3 13514 179 47 34 chr6 108896819 108899145 -80380409 - Tigger2 DNA MER2_type -350 2368 1 22 70 0 0 chr6 108900135 108900178 -80379376 + AT_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chr6 108900618 108900638 -80378916 + (CAA)n Simple_repeat Simple_repeat 2 21 0 226 158 0 35 chr6 108900696 108900753 -80378801 + L1MCa LINE L1 2006 2060 -4366 332 278 99 37 chr6 108901025 108901487 -80378067 - L1ME LINE L1 -305 5861 5366 301 332 34 71 chr6 108901490 108901812 -80377742 - L1ME LINE L1 -826 5320 5011 195 186 0 0 chr6 108901877 108901920 -80377634 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 201 39 0 0 chr6 108902046 108902072 -80377482 + (TTTTTA)n Simple_repeat Simple_repeat 2 27 0 208 156 0 0 chr6 108902178 108902210 -80377344 + polypyrimidine Low_complexity Low_complexity 3 34 0 910 161 6 6 chr6 108902210 108902390 -80377164 + CT-rich Low_complexity Low_complexity 1 180 0 1828 148 3 62 chr6 108902390 108902715 -80376839 - AluSx SINE Alu -6 306 1 1292 279 28 17 chr6 108902771 108903133 -80376421 + MLT1A2 LTR MaLR 1 366 -8 234 309 10 10 chr6 108903749 108903846 -80375708 + (CATATA)n Simple_repeat Simple_repeat 6 102 0 258 370 108 23 chr6 108904647 108905168 -80374386 + L2 LINE L2 1782 2346 -968 1358 279 50 30 chr6 108905168 108905745 -80373809 + L1ME3A LINE L1 5567 6155 -15 222 375 47 16 chr6 108905830 108905958 -80373596 + L2 LINE L2 2716 2847 -467 21 0 0 0 chr6 108906529 108906550 -80373004 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 108906732 108906755 -80372799 + AT_rich Low_complexity Low_complexity 1 23 0 1018 257 85 106 chr6 108907311 108908016 -80371538 + MER21B LTR ERV1 24 713 -150 338 290 35 21 chr6 108908094 108908239 -80371315 - Charlie8 DNA MER1_type -2179 238 92 677 252 115 68 chr6 108908409 108908687 -80370867 + L1MCb LINE L1 125 415 -5630 245 257 69 10 chr6 108908699 108908800 -80370754 + L1MCb LINE L1 2883 2989 -3575 254 226 0 0 chr6 108909371 108909424 -80370130 - MLT1J2 LTR MaLR -46 404 352 233 311 100 0 chr6 108909508 108909598 -80369956 - MLT1J1 LTR MaLR -244 202 104 319 162 161 2 chr6 108909845 108909917 -80369637 - AluSp/q SINE Alu -3 300 226 1040 60 0 0 chr6 108911353 108911486 -80368068 - L1PA13 LINE L1 -40 6123 5991 182 337 133 33 chr6 108912727 108912908 -80366646 - MIR SINE MIR -55 207 9 21 71 0 0 chr6 108913729 108913771 -80365783 + AT_rich Low_complexity Low_complexity 1 42 0 2251 136 78 29 chr6 108914297 108914710 -80364844 - Tigger2a DNA MER2_type -1 433 1 1441 128 4 9 chr6 108915202 108915428 -80364126 + L1PA8 LINE L1 5945 6169 -3 22 35 0 0 chr6 108916162 108916191 -80363363 + AT_rich Low_complexity Low_complexity 1 29 0 288 102 0 0 chr6 108917387 108917436 -80362118 + (CA)n Simple_repeat Simple_repeat 2 50 0 672 204 21 31 chr6 108917499 108917690 -80361864 - MER53 DNA DNA 0 189 1 247 293 0 50 chr6 108918445 108918544 -80361010 - MLT1L LTR MaLR -372 243 150 12954 161 17 40 chr6 108918604 108918661 -80360893 - Tigger1 DNA MER2_type 0 2418 2361 1837 147 70 14 chr6 108918661 108919016 -80360538 - THE1C LTR MaLR 0 375 1 12954 161 17 40 chr6 108919016 108921432 -80358122 - Tigger1 DNA MER2_type -57 2361 1 189 74 0 0 chr6 108922184 108922211 -80357343 + (TG)n Simple_repeat Simple_repeat 2 28 0 596 305 61 71 chr6 108922343 108922558 -80356996 - L2 LINE L2 -1 3312 3096 1769 120 4 0 chr6 108922558 108922844 -80356710 + AluSx SINE Alu 23 309 0 596 305 61 71 chr6 108922844 108923250 -80356304 - L2 LINE L2 -217 3096 2700 382 357 35 0 chr6 108923292 108923463 -80356091 - L2 LINE L2 -962 2352 2176 334 308 17 0 chr6 108923463 108923583 -80355971 + L1ME LINE L1 5578 5699 -422 220 274 24 0 chr6 108923643 108923727 -80355827 + (TATG)n Simple_repeat Simple_repeat 3 88 0 262 179 0 0 chr6 108923975 108924031 -80355523 - L1MC4 LINE L1 -1339 6703 6648 263 245 0 43 chr6 108924049 108924143 -80355411 - L1MC4 LINE L1 -1339 6703 6614 212 210 0 32 chr6 108924145 108924207 -80355347 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 240 315 0 0 chr6 108924207 108924296 -80355258 + L1MC4 LINE L1 6614 6702 -1340 * 254 250 0 62 chr6 108924233 108924329 -80355225 - L1MC4 LINE L1 -1339 6703 6614 204 320 0 0 chr6 108924329 108924379 -80355175 + (CATA)n Simple_repeat Simple_repeat 4 53 0 310 322 0 0 chr6 108924380 108924467 -80355087 + L1MC4 LINE L1 6617 6703 -1339 * 316 287 23 0 chr6 108924439 108924526 -80355028 - L1MC4 LINE L1 -1339 6703 6615 204 237 0 0 chr6 108924526 108924564 -80354990 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 333 272 0 22 chr6 108924565 108924657 -80354897 - L1MC4 LINE L1 -1339 6703 6614 308 235 0 82 chr6 108924611 108924709 -80354845 + L1MC4 LINE L1 6614 6703 -1339 * 226 266 0 43 chr6 108924721 108924815 -80354739 + L1MC4 LINE L1 6614 6703 -1339 225 178 0 0 chr6 108924816 108924861 -80354693 + (TA)n Simple_repeat Simple_repeat 2 46 0 626 90 0 0 chr6 108927699 108927788 -80351766 - L1MA3 LINE L1 0 6305 6217 338 370 65 89 chr6 108927975 108928391 -80351163 + L1MEd LINE L1 224 629 -5490 300 280 171 30 chr6 108928442 108928746 -80350808 + L1MEd LINE L1 2119 2465 -3664 21 36 0 0 chr6 108928823 108928851 -80350703 + AT_rich Low_complexity Low_complexity 1 28 0 22 88 0 0 chr6 108929419 108929476 -80350078 + AT_rich Low_complexity Low_complexity 1 57 0 300 323 65 8 chr6 108929544 108929668 -80349886 + L1MC/D LINE L1 5502 5632 -2176 219 139 0 0 chr6 108930299 108930335 -80349219 + (TG)n Simple_repeat Simple_repeat 2 37 0 224 392 55 23 chr6 108930682 108931080 -80348474 - L2 LINE L2 -2235 1079 669 21 36 0 0 chr6 108931220 108931248 -80348306 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr6 108931440 108931467 -80348087 + AT_rich Low_complexity Low_complexity 1 27 0 1890 137 0 7 chr6 108931921 108932231 -80347323 - AluSq SINE Alu 0 308 1 26 30 0 0 chr6 108932576 108932609 -80346945 + AT_rich Low_complexity Low_complexity 1 33 0 238 256 37 37 chr6 108932668 108932750 -80346804 - MLT1G1 LTR MaLR -188 389 286 269 328 95 0 chr6 108932766 108932882 -80346672 - MLT1G1 LTR MaLR -466 129 3 1296 263 77 63 chr6 108932898 108933483 -80346071 + MLT1E LTR MaLR 1 593 0 208 356 167 20 chr6 108933818 108934166 -80345388 + L2 LINE L2 451 849 -2465 226 205 214 60 chr6 108934219 108934336 -80345218 - MLT1J LTR MaLR -165 346 212 228 250 36 0 chr6 108934459 108934515 -80345039 - MLT1J LTR MaLR -412 99 42 417 254 127 36 chr6 108934852 108935077 -80344477 + MIR SINE MIR 14 262 0 353 58 19 0 chr6 108936955 108937007 -80342547 + (TG)n Simple_repeat Simple_repeat 2 54 0 332 253 33 22 chr6 108937292 108937383 -80342171 - L1MC4 LINE L1 -1338 6704 6613 889 228 0 0 chr6 108937614 108937785 -80341769 - AluJb SINE Alu -3 309 139 217 246 98 0 chr6 108937815 108937876 -80341678 + L2 LINE L2 3245 3311 -2 206 203 153 17 chr6 108938166 108938225 -80341329 - L3b LINE CR1 -276 1307 1241 999 302 76 10 chr6 108938880 108939237 -80340317 - MLT1I LTR MaLR 0 409 32 25 75 0 0 chr6 108939540 108939593 -80339961 + AT_rich Low_complexity Low_complexity 1 53 0 294 293 91 107 chr6 108939685 108940200 -80339354 + L2 LINE L2 1881 2387 -927 1432 204 53 0 chr6 108940546 108941010 -80338544 - AluJo SINE Alu 0 481 3 205 293 152 10 chr6 108941024 108941123 -80338431 + L2 LINE L2 2702 2814 -500 246 341 62 28 chr6 108941205 108941381 -80338173 - MER5A DNA MER1_type 0 189 8 26 64 0 0 chr6 108941545 108941592 -80337962 + AT_rich Low_complexity Low_complexity 1 47 0 1153 333 128 13 chr6 108941811 108942514 -80337040 + L3 LINE CR1 676 1459 -118 216 0 0 0 chr6 108942517 108942541 -80337013 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1519 153 86 0 chr6 108942558 108942813 -80336741 - AluSx SINE Alu -35 277 1 800 252 27 46 chr6 108942945 108943207 -80336347 - L1ME1 LINE L1 -5 6161 5905 932 202 5 40 chr6 108943229 108943452 -80336102 + L1MA4A LINE L1 5751 5965 -338 23 65 0 39 chr6 108943462 108943539 -80336015 + AT_rich Low_complexity Low_complexity 1 74 0 195 69 0 0 chr6 108943630 108943659 -80335895 + (CA)n Simple_repeat Simple_repeat 1 29 0 233 313 99 23 chr6 108944186 108944317 -80335237 - MIR SINE MIR -43 219 79 244 351 78 45 chr6 108944852 108945094 -80334460 + MIR SINE MIR 3 252 -10 34 42 0 0 chr6 108946020 108946068 -80333486 + AT_rich Low_complexity Low_complexity 1 48 0 39 108 0 0 chr6 108946272 108946430 -80333124 + AT_rich Low_complexity Low_complexity 1 158 0 234 204 151 21 chr6 108948720 108948813 -80330741 - MER103 DNA DNA -9 157 53 400 300 57 70 chr6 108948954 108949184 -80330370 + L3 LINE CR1 1351 1577 0 189 0 0 0 chr6 108949816 108949837 -80329717 + (GA)n Simple_repeat Simple_repeat 2 22 0 3195 153 41 3 chr6 108951859 108952441 -80327113 + MER6A DNA MER2_type 1 604 -1 2233 129 73 2 chr6 108952588 108952983 -80326571 - L1MA3 LINE L1 0 6305 5883 21 57 0 0 chr6 108953308 108953343 -80326211 + AT_rich Low_complexity Low_complexity 1 35 0 833 283 119 40 chr6 108955558 108956010 -80323544 + LTR33A LTR ERVL 8 495 -28 607 287 194 24 chr6 108956340 108956675 -80322879 - L2 LINE L2 -588 2726 2335 240 287 97 101 chr6 108958671 108958929 -80320625 + MLT1J1 LTR MaLR 58 314 -132 * 270 274 34 34 chr6 108958907 108959024 -80320530 + MLT1J LTR MaLR 360 476 -35 733 290 81 35 chr6 108959312 108959792 -80319762 + HAL1b LINE L1 84 585 -763 1681 148 0 35 chr6 108959796 108960086 -80319468 + AluSx SINE Alu 1 280 -32 704 164 0 7 chr6 108960086 108960226 -80319328 + GA-rich Low_complexity Low_complexity 4 142 0 804 224 102 50 chr6 108961083 108961466 -80318088 + HAL1b LINE L1 858 1260 -88 1621 200 58 0 chr6 108961745 108962190 -80317364 + MLT2B1 LTR ERVL 1 520 0 330 318 32 8 chr6 108962684 108962810 -80316744 + L1MC4 LINE L1 7323 7451 -591 * 477 273 87 27 chr6 108962802 108963169 -80316385 + L1MC5 LINE L1 7270 7658 -303 1350 203 22 0 chr6 108963208 108963484 -80316070 - AluJb SINE Alu -30 282 1 337 286 264 0 chr6 108963516 108963653 -80315901 + L1MC4 LINE L1 7791 7891 -151 2328 98 0 0 chr6 108963653 108963959 -80315595 - AluSg SINE Alu -4 306 1 337 286 264 0 chr6 108963959 108963999 -80315555 + L1MC4 LINE L1 7891 8015 -27 288 318 101 27 chr6 108964081 108964229 -80315325 - MER117 DNA MER1_type -38 159 1 391 192 37 2 chr6 108964671 108964780 -80314774 - L1MC3 LINE L1 -2 7806 7669 195 271 157 0 chr6 108964887 108964957 -80314597 - MIR SINE MIR -135 127 47 185 327 28 37 chr6 108965823 108965930 -80313624 - MIR SINE MIR -76 186 81 310 344 122 0 chr6 108967588 108967719 -80311835 + L2 LINE L2 3109 3255 -17 27 81 0 0 chr6 108968158 108968220 -80311334 + AT_rich Low_complexity Low_complexity 1 62 0 186 103 0 0 chr6 108968860 108968889 -80310665 + (TC)n Simple_repeat Simple_repeat 2 30 0 471 18 0 0 chr6 108968889 108968945 -80310609 + (CA)n Simple_repeat Simple_repeat 1 56 0 466 214 113 119 chr6 108968945 108969185 -80310369 + L1MC5 LINE L1 6719 6956 -1005 195 42 0 0 chr6 108969185 108969209 -80310345 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 466 214 113 119 chr6 108969209 108969430 -80310124 + L1MC5 LINE L1 6956 7177 -784 493 204 8 68 chr6 108969988 108970120 -80309434 + FLAM_A SINE Alu 3 126 -7 23 33 0 0 chr6 108970424 108970454 -80309100 + AT_rich Low_complexity Low_complexity 1 30 0 181 98 49 0 chr6 108970556 108970597 -80308957 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 259 293 71 43 chr6 108970981 108971121 -80308433 + MIR SINE MIR 92 235 -27 2089 132 0 0 chr6 108972245 108972548 -80307006 - AluSg SINE Alu -5 305 3 1447 167 28 50 chr6 108973689 108974006 -80305548 + MER44D DNA MER2_type 23 602 -7 637 372 103 15 chr6 108974011 108974807 -80304747 - L2 LINE L2 -28 3285 2409 1455 239 97 108 chr6 108974829 108975664 -80303890 - LTR1B LTR ERV1 0 826 1 13448 176 47 28 chr6 108975664 108975888 -80303666 - HUERS-P2 LTR ERV1 0 3088 2870 2045 135 0 0 chr6 108975888 108976184 -80303370 - AluSx SINE Alu -16 296 1 13448 176 47 28 chr6 108976184 108978933 -80300621 - HUERS-P2 LTR ERV1 -218 2870 2 1827 222 72 105 chr6 108978934 108979785 -80299769 - LTR1B LTR ERV1 0 826 4 25 31 0 0 chr6 108980164 108980196 -80299358 + AT_rich Low_complexity Low_complexity 1 32 0 512 242 22 102 chr6 108981803 108982126 -80297428 - L1M4 LINE L1 -1359 4787 4497 203 333 96 30 chr6 108983910 108984045 -80295509 + MIR SINE MIR 119 262 0 865 304 78 28 chr6 108984270 108984808 -80294746 + L2 LINE L2 2750 3312 -1 254 297 0 0 chr6 108984825 108984889 -80294665 + MIR SINE MIR 196 259 -3 536 344 42 4 chr6 108984952 108985193 -80294361 - MIR SINE MIR -12 250 1 1923 92 0 0 chr6 108985874 108986147 -80293407 - L1PA13 LINE L1 -1 6162 5890 681 213 26 13 chr6 108986297 108986452 -80293102 - MER90 LTR ERV1 -387 188 32 661 169 31 72 chr6 108986484 108986679 -80292875 - MER53 DNA DNA 0 189 3 26 64 0 0 chr6 108988189 108988236 -80291318 + AT_rich Low_complexity Low_complexity 1 47 0 31 26 0 0 chr6 108991498 108991536 -80288018 + AT_rich Low_complexity Low_complexity 1 38 0 279 306 20 10 chr6 108994740 108994838 -80284716 - MLT1E LTR MaLR -494 99 1 260 353 66 15 chr6 108995172 108995308 -80284246 + MIR SINE MIR 78 220 -42 262 239 155 38 chr6 108996128 108996392 -80283162 - L1ME4a LINE L1 -157 5964 5670 25 0 0 0 chr6 108996642 108996667 -80282887 + AT_rich Low_complexity Low_complexity 1 25 0 456 304 6 25 chr6 108997300 108997458 -80282096 + MIR SINE MIR 95 249 -13 401 343 66 25 chr6 108998195 108998437 -80281117 + L2 LINE L2 2832 3083 -230 5533 176 41 51 chr6 108999561 109000695 -80278859 + Tigger3b DNA MER2_type 110 1231 0 2278 198 25 25 chr6 109001554 109002068 -80277486 + MER67D LTR ERV1 1 514 0 29 0 0 0 chr6 109003150 109003179 -80276375 + AT_rich Low_complexity Low_complexity 1 29 0 264 149 0 0 chr6 109003342 109003389 -80276165 + (TA)n Simple_repeat Simple_repeat 2 48 0 298 212 53 6 chr6 109003420 109003590 -80275964 + (TA)n Simple_repeat Simple_repeat 1 178 0 214 288 125 0 chr6 109004099 109004179 -80275375 - MIR3 SINE MIR -35 173 84 1862 203 48 30 chr6 109004931 109005390 -80274164 + MLT1C LTR MaLR 1 467 0 829 292 109 34 chr6 109005391 109005775 -80273779 + MLT1J2 LTR MaLR 1 413 -37 22 0 0 0 chr6 109006255 109006277 -80273277 + AT_rich Low_complexity Low_complexity 1 22 0 1305 228 0 40 chr6 109006549 109006852 -80272702 + AluJb SINE Alu 15 305 -7 22 0 0 0 chr6 109008826 109008848 -80270706 + AT_rich Low_complexity Low_complexity 1 22 0 244 365 0 0 chr6 109009103 109009199 -80270355 - MIR SINE MIR -6 256 161 21 0 0 0 chr6 109009625 109009646 -80269908 + AT_rich Low_complexity Low_complexity 1 21 0 32 75 0 0 chr6 109010985 109011052 -80268502 + AT_rich Low_complexity Low_complexity 1 67 0 29 47 0 0 chr6 109012056 109012099 -80267455 + AT_rich Low_complexity Low_complexity 1 43 0 25 83 0 0 chr6 109012229 109012289 -80267265 + AT_rich Low_complexity Low_complexity 1 60 0 266 354 12 0 chr6 109013489 109013571 -80265983 - L2 LINE L2 -669 2645 2563 294 225 0 0 chr6 109013718 109013798 -80265756 + CT-rich Low_complexity Low_complexity 2 81 0 1044 142 6 38 chr6 109014265 109014448 -80265106 - FRAM SINE Alu 0 176 1 27 49 0 0 chr6 109014675 109014716 -80264838 + AT_rich Low_complexity Low_complexity 1 41 0 2348 41 7 7 chr6 109014719 109015013 -80264541 - L1PA5 LINE L1 -6 6148 5855 4745 43 2 19 chr6 109015113 109015744 -80263810 - L1P LINE L1 -3192 2954 2335 297 287 40 53 chr6 109015861 109016011 -80263543 + MLT1H LTR MaLR 13 160 -389 1539 125 31 0 chr6 109016394 109016650 -80262904 - L1MA3 LINE L1 0 6305 6042 430 313 61 37 chr6 109017545 109017823 -80261731 + LTR33A LTR ERVL 29 284 -239 21 0 0 0 chr6 109019048 109019069 -80260485 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 109019498 109019525 -80260029 + AT_rich Low_complexity Low_complexity 1 27 0 223 284 239 0 chr6 109020234 109020389 -80259165 + L2 LINE L2 3116 3307 -6 228 67 0 0 chr6 109021409 109021439 -80258115 + (T)n Simple_repeat Simple_repeat 1 30 0 294 352 66 28 chr6 109021655 109021837 -80257717 - MIR SINE MIR -28 234 46 23 0 0 0 chr6 109022982 109023005 -80256549 + AT_rich Low_complexity Low_complexity 1 23 0 417 276 0 32 chr6 109024164 109024287 -80255267 - MIR SINE MIR -142 120 2 436 299 77 26 chr6 109024467 109024661 -80254893 + MIR SINE MIR 54 257 -5 26 30 0 0 chr6 109025176 109025209 -80254345 + AT_rich Low_complexity Low_complexity 1 33 0 350 105 66 26 chr6 109026065 109026141 -80253413 + L1PB4 LINE L1 4403 4481 -1665 4996 174 21 10 chr6 109026155 109027703 -80251851 + L1PB4 LINE L1 4589 6155 -1 323 350 19 12 chr6 109027768 109027928 -80251626 + MIR SINE MIR 89 249 -13 23 33 0 0 chr6 109028154 109028184 -80251370 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr6 109030459 109030484 -80249070 + AT_rich Low_complexity Low_complexity 1 25 0 228 209 0 0 chr6 109030889 109030932 -80248622 + GA-rich Low_complexity Low_complexity 2 44 0 770 319 63 26 chr6 109032404 109032833 -80246721 + MLT1J LTR MaLR 13 457 -54 7104 56 0 2 chr6 109035133 109036279 -80243275 - L1PA5 LINE L1 -2 6152 5007 22 0 0 0 chr6 109036640 109036662 -80242892 + AT_rich Low_complexity Low_complexity 1 22 0 217 263 0 62 chr6 109037757 109037837 -80241717 + L3 LINE CR1 431 505 -1072 368 283 198 19 chr6 109037893 109038105 -80241449 + L3 LINE CR1 626 875 -702 239 282 0 28 chr6 109038152 109038223 -80241331 + L3 LINE CR1 1508 1576 -1 21 36 0 0 chr6 109038633 109038661 -80240893 + AT_rich Low_complexity Low_complexity 1 28 0 192 152 0 0 chr6 109038858 109038891 -80240663 + GA-rich Low_complexity Low_complexity 3 35 0 1684 165 11 25 chr6 109039505 109039814 -80239740 + AluJb SINE Alu 1 305 0 207 0 0 0 chr6 109040099 109040122 -80239432 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1121 77 26 0 chr6 109040124 109040280 -80239274 - L1PA8 LINE L1 -19 6153 5994 596 239 148 123 chr6 109043029 109043069 -80236485 - MLT1G1 LTR MaLR -2 593 555 4294 168 63 23 chr6 109043069 109043937 -80235617 - MER4D LTR ERV1 0 903 1 596 239 148 123 chr6 109043937 109044374 -80235180 - MLT1G1 LTR MaLR -40 555 64 760 62 0 0 chr6 109045006 109045102 -80234452 + MER4B LTR ERV1 2 97 -513 24145 48 2 4 chr6 109045205 109048782 -80230772 - L1PA5 LINE L1 -249 5905 2335 291 287 40 53 chr6 109048899 109049049 -80230505 + MLT1H LTR MaLR 13 160 -389 2799 10 0 7 chr6 109049416 109049726 -80229828 - AluYa5 SINE Alu -2 309 2 362 226 185 36 chr6 109049762 109049957 -80229597 - HAL1b LINE L1 -392 956 733 379 265 108 29 chr6 109049984 109050188 -80229366 - HAL1b LINE L1 -664 684 465 519 257 197 13 chr6 109050191 109050343 -80229211 - MER5A DNA MER1_type -1 188 9 580 284 65 32 chr6 109050350 109050688 -80228866 - HAL1b LINE L1 -877 471 123 2634 143 29 0 chr6 109050828 109051248 -80228306 - MER41B LTR ERV1 -74 561 130 1309 199 72 8 chr6 109051307 109051669 -80227885 + LTR37A LTR ERV1 39 423 -3 2080 141 3 3 chr6 109051706 109052005 -80227549 - AluJb SINE Alu -13 299 1 191 223 62 0 chr6 109052215 109052327 -80227227 + (TA)n Simple_repeat Simple_repeat 1 119 0 207 0 0 0 chr6 109052747 109052770 -80226784 + (TC)n Simple_repeat Simple_repeat 2 24 0 226 245 0 61 chr6 109052774 109052872 -80226682 + L1MC4 LINE L1 6614 6705 -1337 298 213 0 0 chr6 109052924 109052971 -80226583 - Tigger1 DNA MER2_type -7 2411 2365 201 270 0 0 chr6 109053003 109053103 -80226451 + (TA)n Simple_repeat Simple_repeat 2 101 0 285 224 0 17 chr6 109053112 109053170 -80226384 - Tigger1 DNA MER2_type 0 2418 2362 27 29 0 0 chr6 109053173 109053207 -80226347 + AT_rich Low_complexity Low_complexity 1 34 0 518 184 92 0 chr6 109053307 109053448 -80226106 - Tigger2 DNA MER2_type -104 2614 2461 4290 151 25 7 chr6 109053519 109054254 -80225300 - Tigger2 DNA MER2_type -1969 749 2 22 56 0 0 chr6 109054626 109054662 -80224892 + AT_rich Low_complexity Low_complexity 1 36 0 749 162 150 29 chr6 109054811 109054984 -80224570 + AluJo SINE Alu 99 292 -20 457 279 62 43 chr6 109055232 109055440 -80224114 + MIR SINE MIR 21 232 -30 307 304 116 74 chr6 109055879 109056421 -80223133 + L1M2 LINE L1 563 1127 -5722 3492 164 22 9 chr6 109056821 109057460 -80222094 - L1MB2 LINE L1 -106 6065 5419 2454 74 0 3 chr6 109057738 109058035 -80221519 - AluSx SINE Alu -12 300 5 280 299 109 3 chr6 109058229 109058357 -80221197 + MIR3 SINE MIR 31 169 -39 440 136 111 0 chr6 109058431 109058512 -80221042 - AluY SINE Alu -3 308 219 676 243 88 12 chr6 109058621 109058807 -80220747 + MLT1C LTR MaLR 284 467 0 2376 93 0 0 chr6 109059090 109059392 -80220162 + AluSx SINE Alu 1 302 -10 216 0 0 0 chr6 109059392 109059416 -80220138 + (TA)n Simple_repeat Simple_repeat 2 25 0 2075 162 3 0 chr6 109059416 109059762 -80219792 + L1P LINE L1 4655 5001 -1145 2019 169 60 22 chr6 109059897 109060311 -80219243 - Tigger2a DNA MER2_type 0 434 5 2119 145 3 0 chr6 109060311 109060622 -80218932 + AluSx SINE Alu 1 312 0 998 148 17 6 chr6 109060741 109060917 -80218637 - L1PA16 LINE L1 -142 6024 5847 * 7105 198 22 8 chr6 109060903 109062242 -80217312 - MSTA-int LTR MaLR -294 1357 1 2130 183 61 19 chr6 109062242 109062653 -80216901 - MSTA LTR MaLR 0 428 1 3140 199 12 7 chr6 109062655 109063329 -80216225 - L1 LINE L1 -1798 4348 3672 12168 187 48 35 chr6 109063335 109063882 -80215672 - L1PA15-16 LINE L1 -3260 3589 3050 6594 68 25 0 chr6 109063882 109065063 -80214491 + L1PA7 LINE L1 4950 6153 -1 12168 187 48 35 chr6 109065063 109066160 -80213394 - L1PA15-16 LINE L1 -3799 3050 1968 1747 170 37 0 chr6 109066160 109066454 -80213100 - AluSx SINE Alu -7 305 1 12168 187 48 35 chr6 109066454 109066670 -80212884 - L1PA15-16 LINE L1 -4881 1968 1756 366 23 0 0 chr6 109066670 109066713 -80212841 + (TTA)n Simple_repeat Simple_repeat 2 44 0 12168 187 48 35 chr6 109066713 109067725 -80211829 - L1PA15-16 LINE L1 -5093 1756 615 2354 54 0 4 chr6 109068759 109069038 -80210516 - AluY SINE Alu -33 278 1 25 0 0 0 chr6 109069101 109069126 -80210428 + AT_rich Low_complexity Low_complexity 1 25 0 311 189 16 11 chr6 109069265 109069343 -80210211 + AluJ/FLAM SINE Alu 12 71 -231 6088 148 45 16 chr6 109069443 109070033 -80209521 - Tigger1 DNA MER2_type -929 1489 851 2442 59 3 10 chr6 109070033 109070336 -80209218 - AluY SINE Alu -10 301 1 6088 148 45 16 chr6 109070336 109070851 -80208703 - Tigger1 DNA MER2_type -1567 851 352 23 68 0 0 chr6 109071008 109071052 -80208502 + AT_rich Low_complexity Low_complexity 1 44 0 50 42 0 0 chr6 109071253 109071324 -80208230 + AT_rich Low_complexity Low_complexity 1 71 0 1367 213 22 29 chr6 109071673 109071987 -80207567 + AluJb SINE Alu 1 312 0 25 0 0 0 chr6 109073953 109073978 -80205576 + AT_rich Low_complexity Low_complexity 1 25 0 186 167 0 0 chr6 109074996 109075032 -80204522 + (CATA)n Simple_repeat Simple_repeat 3 38 0 287 83 0 0 chr6 109075773 109075809 -80203745 - U2 snRNA snRNA -152 36 1 1904 142 40 7 chr6 109077650 109077952 -80201602 + AluSx SINE Alu 1 312 0 449 206 28 28 chr6 109078198 109078378 -80201176 + GA-rich Low_complexity Low_complexity 1 180 0 238 321 52 48 chr6 109078412 109078661 -80200893 - L2 LINE L2 -124 3189 2940 5243 100 5 30 chr6 109078687 109079459 -80200095 + LTR17 LTR ERV1 1 753 -27 1231 309 145 23 chr6 109079475 109079862 -80199692 - L2 LINE L2 -360 2954 2616 2154 79 0 14 chr6 109079862 109080142 -80199412 - AluY SINE Alu -15 296 21 2189 104 0 17 chr6 109080142 109080441 -80199113 - AluSg1 SINE Alu -15 294 1 1231 309 145 23 chr6 109080441 109080616 -80198938 - L2 LINE L2 -697 2617 2322 616 237 12 47 chr6 109080625 109080794 -80198760 - L2 LINE L2 -1239 2075 1913 990 138 42 6 chr6 109080966 109081133 -80198421 + AluSg/x SINE Alu 134 306 -6 228 182 0 0 chr6 109081134 109081178 -80198376 + GA-rich Low_complexity Low_complexity 1 44 0 413 266 252 28 chr6 109081178 109081464 -80198090 - L2 LINE L2 -1736 1578 1229 32 81 0 0 chr6 109083017 109083091 -80196463 + AT_rich Low_complexity Low_complexity 1 74 0 21 36 0 0 chr6 109083135 109083163 -80196391 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr6 109083703 109083742 -80195812 + AT_rich Low_complexity Low_complexity 1 39 0 1217 308 235 4 chr6 109083806 109084575 -80194979 + L2 LINE L2 1329 2275 -1039 495 227 130 24 chr6 109085042 109085249 -80194305 + MER96B DNA MER1_type? 188 416 -1 3308 194 30 77 chr6 109085562 109086578 -80192976 - LTR5 LTR ERVK 0 969 1 1076 233 12 8 chr6 109086903 109087143 -80192411 + L1M4 LINE L1 14 254 -6288 552 251 72 48 chr6 109087153 109087320 -80192234 + FRAM SINE Alu 1 170 -6 2324 149 42 42 chr6 109087337 109087788 -80191766 + L1PB3 LINE L1 5699 6149 -5 1199 300 21 10 chr6 109087849 109088236 -80191318 + L1M4 LINE L1 281 671 -5871 25 90 0 0 chr6 109088300 109088367 -80191187 + AT_rich Low_complexity Low_complexity 1 67 0 233 235 0 0 chr6 109089313 109089364 -80190190 - MIR SINE MIR -155 107 57 427 127 14 0 chr6 109089505 109089576 -80189978 - MSTB LTR MaLR 0 426 355 8860 186 13 8 chr6 109089579 109091223 -80188331 - MSTB-int LTR MaLR 0 1651 1 1897 188 51 24 chr6 109091223 109091638 -80187916 - MSTB LTR MaLR 0 426 1 883 264 82 49 chr6 109091911 109092279 -80187275 + MLT1H LTR MaLR 43 422 -127 2070 194 65 45 chr6 109092280 109092745 -80186809 + MLT1D LTR MaLR 1 474 -31 735 208 45 48 chr6 109093866 109094121 -80185433 - MER33 DNA MER1_type -78 246 1 268 286 64 11 chr6 109094205 109094218 -80185336 + MER5A DNA MER1_type 44 55 -134 2372 172 105 25 chr6 109094218 109094695 -80184859 + MLT2B2 LTR ERVL 1 515 0 268 286 64 11 chr6 109094695 109094771 -80184783 + MER5A DNA MER1_type 55 156 -33 184 290 37 75 chr6 109094703 109094810 -80184744 - MER5B DNA MER1_type -75 103 1 * 228 310 121 46 chr6 109094874 109095048 -80184506 + MIR SINE MIR 21 207 -55 1154 212 52 85 chr6 109095146 109095509 -80184045 - MLT1B LTR MaLR -38 352 2 509 223 81 83 chr6 109096193 109096406 -80183148 + MLT2B1 LTR ERVL 110 356 -41 270 0 0 0 chr6 109096406 109096436 -80183118 + (CA)n Simple_repeat Simple_repeat 2 31 0 509 223 81 83 chr6 109096436 109096478 -80183076 + MLT2B1 LTR ERVL 356 397 0 3571 133 50 22 chr6 109096755 109097355 -80182199 + L1PA15 LINE L1 5431 6047 -118 247 315 101 23 chr6 109097562 109097781 -80181773 + HAL1b LINE L1 205 440 -908 498 235 65 46 chr6 109098175 109098328 -80181226 + MLT2E LTR ERVL 22 177 -451 1811 279 39 28 chr6 109148409 109149331 -80130223 + L1M1 LINE L1 2262 3386 -4180 11468 220 42 19 chr6 109150596 109153866 -80125688 + L1M4c LINE L1 2030 5387 -995 882 321 44 42 chr6 109154851 109155328 -80124226 - MLT1H LTR MaLR -1 548 71 21 36 0 0 chr6 109155577 109155605 -80123949 + AT_rich Low_complexity Low_complexity 1 28 0 344 310 40 23 chr6 109157732 109157906 -80121648 + MLT1L LTR MaLR 90 266 -349 523 308 43 43 chr6 109159234 109159510 -80120044 - MER102a DNA MER1_type 0 330 55 2218 127 0 3 chr6 109159538 109159852 -80119702 + AluSq SINE Alu 1 313 0 1232 167 28 52 chr6 109159867 109160155 -80119399 + L1MA7 LINE L1 5521 5801 -379 2545 201 3 0 chr6 109160255 109160949 -80118605 + L1P5 LINE L1 4771 5465 -686 9180 26 1 0 chr6 109160974 109162057 -80117497 - L1PA3 LINE L1 -1030 5116 4033 7585 28 1 1 chr6 109162057 109163100 -80116454 + L1PA3 LINE L1 5110 6152 -3 29 0 0 0 chr6 109163103 109163132 -80116422 + AT_rich Low_complexity Low_complexity 1 29 0 3113 163 18 3 chr6 109163535 109163572 -80115982 - L1MA8 LINE L1 -459 5832 5797 387 0 0 0 chr6 109163572 109163615 -80115939 + (TG)n Simple_repeat Simple_repeat 2 44 0 3113 163 18 3 chr6 109163615 109164223 -80115331 - L1MA8 LINE L1 -494 5797 5172 2563 169 17 122 chr6 109164222 109164415 -80115139 - L1MA8 LINE L1 -1255 4891 4679 * 273 57 0 0 chr6 109164415 109164450 -80115104 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2563 169 17 122 chr6 109164450 109165020 -80114534 - L1MA8 LINE L1 -1467 4679 4208 1876 184 28 18 chr6 109165020 109165454 -80114100 + L1MA7 LINE L1 5847 6285 -6 28 29 0 0 chr6 109165474 109165509 -80114045 + AT_rich Low_complexity Low_complexity 1 35 0 254 294 72 94 chr6 109165688 109165868 -80113686 + MIR SINE MIR 23 198 -64 26 0 0 0 chr6 109166403 109166429 -80113125 + AT_rich Low_complexity Low_complexity 1 26 0 1192 231 15 47 chr6 109166565 109166979 -80112575 - MSTB2 LTR MaLR 0 457 1 1858 203 30 35 chr6 109167217 109167645 -80111909 - MSTC LTR MaLR -2 426 1 254 346 32 16 chr6 109167694 109167879 -80111675 - L1MC/D LINE L1 -2171 5614 5427 1525 189 44 39 chr6 109167898 109168258 -80111296 - L1MB3 LINE L1 -19 6164 5803 1256 194 25 16 chr6 109168258 109168605 -80110949 + Tigger2a DNA MER2_type 1 444 0 2424 192 40 15 chr6 109168606 109169132 -80110422 - L1MB3 LINE L1 -381 5802 5264 22 0 0 0 chr6 109169260 109169282 -80110272 + AT_rich Low_complexity Low_complexity 1 22 0 243 299 73 63 chr6 109169339 109170022 -80109532 - L1MB3 LINE L1 -978 5168 4479 2209 98 14 3 chr6 109170210 109170507 -80109047 + AluSc SINE Alu 1 300 -9 21 57 0 0 chr6 109170525 109170560 -80108994 + AT_rich Low_complexity Low_complexity 1 35 0 2146 125 91 21 chr6 109171185 109171570 -80107984 - MSTA LTR MaLR -2 426 15 232 111 0 0 chr6 109172268 109172304 -80107250 - MSTA LTR MaLR -392 36 1 520 292 77 57 chr6 109172403 109172752 -80106802 - L1MB3 LINE L1 -2705 3441 3086 25 31 0 0 chr6 109173041 109173073 -80106481 + AT_rich Low_complexity Low_complexity 1 32 0 252 226 0 0 chr6 109173446 109173499 -80106055 - MER103 DNA DNA -112 54 2 548 144 18 9 chr6 109174199 109174310 -80105244 + L1MA4A LINE L1 6173 6284 -19 466 335 50 17 chr6 109175292 109175471 -80104083 + MIR SINE MIR 20 204 -58 22 35 0 0 chr6 109176123 109176152 -80103402 + AT_rich Low_complexity Low_complexity 1 29 0 39481 75 7 9 chr6 109176168 109182165 -80097389 + L1PA6 LINE L1 11 5995 -159 3953 42 18 2 chr6 109182265 109182760 -80096794 - MER11B LTR ERVK -733 503 1 248 276 0 41 chr6 109182793 109182891 -80096663 - LTR67 LTR ERVL -374 183 90 5368 138 50 48 chr6 109184655 109185801 -80093753 - L1MC1 LINE L1 -23 6310 5152 1571 210 16 22 chr6 109185933 109186300 -80093254 - MLT1A1 LTR MaLR 0 365 1 305 378 66 52 chr6 109186471 109186757 -80092797 + L2 LINE L2 2983 3272 0 27 0 0 0 chr6 109189895 109189922 -80089632 + AT_rich Low_complexity Low_complexity 1 27 0 6175 53 7 0 chr6 109189923 109190693 -80088861 - L1PA5 LINE L1 -9 6145 5371 3670 36 48 0 chr6 109190692 109191189 -80088365 - L1PA5 LINE L1 -2851 3295 2775 * 2249 100 0 13 chr6 109191615 109191925 -80087629 + AluSq SINE Alu 1 306 -7 21 0 0 0 chr6 109192219 109192240 -80087314 + AT_rich Low_complexity Low_complexity 1 21 0 629 295 6 12 chr6 109193224 109193397 -80086157 - MER58A DNA MER1_type -15 209 38 202 308 128 0 chr6 109194291 109194369 -80085185 - MIR SINE MIR -142 120 33 4093 40 0 0 chr6 109194427 109194922 -80084632 + L1PA4 LINE L1 5659 6153 -2 192 77 0 0 chr6 109194952 109194978 -80084576 + (A)n Simple_repeat Simple_repeat 1 26 0 318 258 24 32 chr6 109195082 109195206 -80084348 - LTR67 LTR ERVL -3 554 432 31 26 0 0 chr6 109196484 109196522 -80083032 + AT_rich Low_complexity Low_complexity 1 38 0 213 65 0 0 chr6 109198068 109198099 -80081455 + (A)n Simple_repeat Simple_repeat 1 31 0 445 183 15 102 chr6 109199581 109199718 -80079836 - MER103 DNA DNA -40 126 2 27 81 0 0 chr6 109200790 109200852 -80078702 + AT_rich Low_complexity Low_complexity 1 62 0 678 195 8 0 chr6 109201103 109201221 -80078333 + AluJb SINE Alu 133 251 -61 396 291 97 31 chr6 109201367 109201563 -80077991 - Charlie8 DNA MER1_type -2170 247 39 1943 172 0 3 chr6 109201572 109201886 -80077668 + AluSq SINE Alu 1 313 0 3207 160 26 33 chr6 109201901 109202565 -80076989 + L1MB4 LINE L1 5521 6179 -1 3035 143 0 99 chr6 109204374 109204961 -80074593 + MER1A DNA MER1_type 1 529 0 3100 194 118 129 chr6 109205869 109207443 -80072111 - MER52A LTR ERV1 -174 1581 26 1726 158 31 136 chr6 109207452 109207633 -80071921 + MER65C LTR ERV1 59 257 -204 1965 131 0 0 chr6 109207633 109207916 -80071638 - AluSq SINE Alu -30 283 1 1726 158 31 136 chr6 109207916 109208184 -80071370 + MER65C LTR ERV1 257 461 0 279 0 0 0 chr6 109208350 109208381 -80071173 + (TTG)n Simple_repeat Simple_repeat 2 32 0 838 232 176 20 chr6 109209059 109209365 -80070189 + MER34 LTR ERV1 25 378 -164 2201 195 60 67 chr6 109209367 109210070 -80069484 + LTR23-int LTR ERV1 1570 2267 -2604 692 240 13 17 chr6 109210289 109210522 -80069032 + LTR23-int LTR ERV1 2263 2494 -2377 29 0 0 0 chr6 109210622 109210651 -80068903 + AT_rich Low_complexity Low_complexity 1 29 0 406 325 29 19 chr6 109210686 109210892 -80068662 + LTR23-int LTR ERV1 2351 2558 -2565 189 0 0 0 chr6 109211250 109211271 -80068283 + (T)n Simple_repeat Simple_repeat 1 21 0 792 136 11 57 chr6 109211271 109211448 -80068106 + LTR23-int LTR ERV1 3562 3730 -2868 986 198 37 45 chr6 109211515 109211840 -80067714 + LTR23-int LTR ERV1 3732 4077 -2254 3940 110 33 78 chr6 109211840 109212560 -80066994 + LTR12 LTR ERV1 1 688 0 986 198 37 45 chr6 109212560 109212647 -80066907 + LTR23-int LTR ERV1 4077 4163 -2168 647 140 88 7 chr6 109214067 109214203 -80065351 + L1MB8 LINE L1 6031 6177 -1 411 310 169 54 chr6 109215601 109216020 -80063534 - L2 LINE L2 0 3313 2811 1714 181 105 0 chr6 109216020 109216373 -80063181 + MLT1B LTR MaLR 1 390 0 411 310 169 54 chr6 109216373 109216504 -80063050 - L2 LINE L2 -502 2811 2697 29 70 0 0 chr6 109216889 109216946 -80062608 + AT_rich Low_complexity Low_complexity 1 57 0 1320 193 28 163 chr6 109217654 109218121 -80061433 - MER67D LTR ERV1 -110 404 1 26 0 0 0 chr6 109218152 109218178 -80061376 + AT_rich Low_complexity Low_complexity 1 26 0 289 359 159 15 chr6 109218295 109218490 -80061064 + MIR SINE MIR 15 237 -25 21 36 0 0 chr6 109218890 109218918 -80060636 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 109219145 109219167 -80060387 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr6 109219508 109219547 -80060007 + AT_rich Low_complexity Low_complexity 1 39 0 343 374 28 0 chr6 109219812 109219991 -80059563 + MIR SINE MIR 71 254 -8 310 286 60 15 chr6 109220007 109220140 -80059414 - L1ME LINE L1 -412 5709 5571 1999 184 39 22 chr6 109220272 109220729 -80058825 - L1MA4 LINE L1 -15 6285 5821 21 36 0 0 chr6 109220847 109220875 -80058679 + AT_rich Low_complexity Low_complexity 1 28 0 229 258 98 38 chr6 109220885 109221017 -80058537 + L1M4 LINE L1 4203 4342 -1804 4363 232 33 12 chr6 109221915 109223050 -80056504 + L1P LINE L1 2837 3994 -2152 270 0 0 0 chr6 109223201 109223231 -80056323 + (A)n Simple_repeat Simple_repeat 1 30 0 462 313 81 41 chr6 109223309 109223654 -80055900 - MLT1I LTR MaLR -34 375 17 504 0 0 0 chr6 109224153 109224209 -80055345 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 683 285 105 57 chr6 109224426 109224664 -80054890 - L1ME3 LINE L1 -237 5925 5700 2258 88 0 20 chr6 109224664 109224969 -80054585 + AluSq SINE Alu 3 301 -12 683 285 105 57 chr6 109224969 109225944 -80053610 - L1ME3 LINE L1 -462 5700 4625 2158 110 0 16 chr6 109225944 109226252 -80053302 - AluSq SINE Alu -10 303 1 683 285 105 57 chr6 109226252 109226642 -80052912 - L1ME3 LINE L1 -1537 4625 4255 357 321 104 24 chr6 109226661 109226873 -80052681 - L1ME3 LINE L1 -1949 4197 3969 2283 225 28 6 chr6 109227503 109227969 -80051585 - MER70B LTR ERVL -102 476 1 538 260 39 22 chr6 109228483 109228664 -80050890 - LTR33 LTR ERVL -4 517 334 534 291 73 22 chr6 109228949 109229128 -80050426 - LTR33 LTR ERVL -333 188 1 779 333 24 0 chr6 109229143 109229389 -80050165 + MIR SINE MIR 11 262 0 350 160 13 13 chr6 109230168 109230243 -80049311 - MER116 DNA Mariner 0 80 6 532 274 103 0 chr6 109230494 109230669 -80048885 - MIR SINE MIR -67 195 3 5341 131 42 9 chr6 109230730 109231625 -80047929 - Tigger4(Zombi) DNA MER2_type 0 2731 1807 3723 142 24 50 chr6 109231621 109232303 -80047251 - Tigger4(Zombi) DNA MER2_type -2067 664 1 * 232 200 0 33 chr6 109232261 109232321 -80047233 + MER46A DNA MER2_type 103 160 -76 * 234 196 71 0 chr6 109232486 109232542 -80047012 + L1MC/D LINE L1 5695 5754 -488 2695 92 11 3 chr6 109232659 109233029 -80046525 - THE1C LTR MaLR 0 375 3 549 241 24 57 chr6 109233049 109233261 -80046293 - HAL1b LINE L1 -900 448 244 24 0 0 0 chr6 109233627 109233651 -80045903 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 109234572 109234597 -80044957 + AT_rich Low_complexity Low_complexity 1 25 0 2216 108 41 36 chr6 109234827 109235189 -80044365 + THE1B LTR MaLR 1 364 0 361 308 122 6 chr6 109235365 109235537 -80044017 + MIR SINE MIR 5 196 -66 22 56 0 19 chr6 109236097 109236138 -80043416 + AT_rich Low_complexity Low_complexity 1 42 -11 1210 118 11 0 chr6 109236138 109236324 -80043230 - L1PB1 LINE L1 -5 6146 5959 22 56 0 19 chr6 109236324 109236336 -80043218 + AT_rich Low_complexity Low_complexity 42 53 0 2850 84 91 12 chr6 109236336 109236753 -80042801 - L1PA7 LINE L1 -16 6138 5689 10766 95 28 1 chr6 109236753 109238214 -80041340 - L1P3 LINE L1 -4957 1504 4 1346 69 0 32 chr6 109238217 109238405 -80041149 - L1PB1 LINE L1 -176 5975 5794 190 56 56 0 chr6 109238406 109238442 -80041112 + (TA)n Simple_repeat Simple_repeat 2 39 0 583 25 0 3 chr6 109238452 109238526 -80041028 + L1P3 LINE L1 1121 1211 -5250 290 79 0 0 chr6 109238524 109238562 -80040992 + L1PA5 LINE L1 5663 5700 -451 * 869 70 0 0 chr6 109238662 109238777 -80040777 + L1PA5 LINE L1 6036 6150 -4 252 271 132 23 chr6 109239046 109239175 -80040379 + MIR SINE MIR 110 252 -10 291 175 0 0 chr6 109239179 109239236 -80040318 + (TA)n Simple_repeat Simple_repeat 2 58 0 546 263 63 6 chr6 109239284 109239459 -80040095 + MIR SINE MIR 1 185 -77 505 118 7 111 chr6 109240151 109240295 -80039259 - MER33 DNA MER1_type -9 354 226 42 89 0 0 chr6 109240296 109240408 -80039146 + AT_rich Low_complexity Low_complexity 1 112 0 771 219 1 18 chr6 109240408 109240578 -80038976 - MER33 DNA MER1_type -259 65 1 23 0 0 0 chr6 109240963 109240986 -80038568 + AT_rich Low_complexity Low_complexity 1 23 0 234 347 88 12 chr6 109241448 109241618 -80037936 + L2 LINE L2 2151 2333 -981 379 306 18 0 chr6 109241623 109241734 -80037820 - MER81 DNA DNA 0 114 2 816 231 0 0 chr6 109241911 109242084 -80037470 - L1PA16 LINE L1 -1280 4866 4694 * 3090 155 14 18 chr6 109242082 109242829 -80036725 + L1PA16 LINE L1 4881 5818 -348 2281 72 4 0 chr6 109242829 109243152 -80036402 + AluY SINE Alu 4 327 0 3090 155 14 18 chr6 109243152 109243491 -80036063 + L1PA16 LINE L1 5818 6157 -9 185 323 39 39 chr6 109243555 109243685 -80035869 - L2 LINE L2 -90 3223 3094 1856 175 94 13 chr6 109243959 109244353 -80035201 + MSTB LTR MaLR 1 426 0 352 177 48 3 chr6 109245278 109245487 -80034067 + AluJb SINE Alu 1 282 -20 2357 161 6 23 chr6 109245959 109246495 -80033059 + L1M1 LINE L1 4903 5425 -880 1565 199 34 3 chr6 109246495 109246792 -80032762 + AluJb SINE Alu 1 306 -6 2357 161 6 23 chr6 109246792 109246987 -80032567 + L1M1 LINE L1 5425 5622 -683 278 140 20 0 chr6 109246969 109247019 -80032535 - L1M1 LINE L1 -658 5647 5597 * 680 99 0 0 chr6 109247047 109247148 -80032406 + L1MA3 LINE L1 6205 6305 0 21 36 0 0 chr6 109247148 109247176 -80032378 + AT_rich Low_complexity Low_complexity 1 28 0 319 232 37 24 chr6 109247194 109247358 -80032196 + (CATATA)n Simple_repeat Simple_repeat 2 167 0 268 235 74 0 chr6 109247369 109247518 -80032036 + (CATATA)n Simple_repeat Simple_repeat 6 165 0 284 137 68 14 chr6 109247527 109247600 -80031954 - LTR38-int LTR ERV1 -354 1432 1356 210 236 0 0 chr6 109247600 109247655 -80031899 + (CATA)n Simple_repeat Simple_repeat 3 57 0 252 250 71 0 chr6 109247655 109247739 -80031815 - L1MC4 LINE L1 -1339 6703 6614 21 36 0 0 chr6 109247868 109247896 -80031658 + AT_rich Low_complexity Low_complexity 1 28 0 2263 76 3 22 chr6 109248026 109248343 -80031211 - AluY SINE Alu 0 311 1 481 261 185 0 chr6 109249444 109249601 -80029953 + MIR SINE MIR 15 200 -62 255 327 70 105 chr6 109250370 109250740 -80028814 + L2 LINE L2 2915 3271 -1 243 217 0 0 chr6 109251158 109251218 -80028336 + (TA)n Simple_repeat Simple_repeat 2 61 0 231 88 0 0 chr6 109251276 109251310 -80028244 + (CA)n Simple_repeat Simple_repeat 1 34 0 521 323 119 56 chr6 109252041 109252502 -80027052 + LTR33 LTR ERVL 19 508 -13 769 214 90 53 chr6 109252970 109253201 -80026353 - MER69 DNA AcHobo -4 2522 2270 1466 219 13 3 chr6 109253201 109253507 -80026047 - AluJo SINE Alu -3 309 1 769 214 90 53 chr6 109253507 109253653 -80025901 - MER69 DNA AcHobo -256 2270 2131 1832 269 108 37 chr6 109253657 109254392 -80025162 - MER69 DNA AcHobo -1739 787 1 234 283 0 0 chr6 109254393 109254453 -80025101 + MLT1K LTR MaLR 189 248 -340 24 0 0 0 chr6 109254648 109254672 -80024882 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 109254890 109254912 -80024642 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 109255452 109255484 -80024070 + AT_rich Low_complexity Low_complexity 1 32 0 209 173 19 19 chr6 109255674 109255726 -80023828 + (TA)n Simple_repeat Simple_repeat 2 53 0 391 288 52 69 chr6 109255726 109256124 -80023430 - L1ME3 LINE L1 -285 5885 5535 2054 61 0 11 chr6 109256862 109257124 -80022430 + AluY SINE Alu 47 305 -6 28 61 0 0 chr6 109257129 109257178 -80022376 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr6 109257230 109257254 -80022300 + AT_rich Low_complexity Low_complexity 1 24 0 336 333 9 0 chr6 109257647 109257761 -80021793 - L2 LINE L2 -7 3306 3192 22 106 0 0 chr6 109257852 109257937 -80021617 + AT_rich Low_complexity Low_complexity 1 85 0 6776 137 121 102 chr6 109257961 109259628 -80019926 + pTR5 LTR ERV1 741 2438 0 260 262 71 0 chr6 109260607 109260691 -80018863 + L2 LINE L2 2459 2548 -766 557 305 192 25 chr6 109260707 109261218 -80018336 + L1MCc LINE L1 19 614 -5809 2300 101 0 0 chr6 109261222 109261528 -80018026 + AluSc SINE Alu 1 306 -3 480 287 79 32 chr6 109261638 109261917 -80017637 + L1MCc LINE L1 814 1105 -5318 563 251 35 0 chr6 109261944 109262115 -80017439 + L1MCc LINE L1 1166 1342 -5081 1385 331 45 58 chr6 109262151 109263043 -80016511 + L1M3b LINE L1 445 1324 -4957 302 216 10 72 chr6 109263056 109263153 -80016401 - L1MC4 LINE L1 -1340 6702 6612 942 73 13 24 chr6 109263153 109263399 -80016155 + (TA)n Simple_repeat Simple_repeat 2 244 0 23 0 0 0 chr6 109263815 109263838 -80015716 + AT_rich Low_complexity Low_complexity 1 23 0 746 225 0 12 chr6 109263952 109264125 -80015429 - L1PA16 LINE L1 -1179 4967 4797 5323 137 16 13 chr6 109264125 109265318 -80014236 + L1PA16 LINE L1 4966 6154 -12 33 0 0 0 chr6 109265318 109265351 -80014203 + AT_rich Low_complexity Low_complexity 1 33 0 31 0 0 0 chr6 109265992 109266023 -80013531 + AT_rich Low_complexity Low_complexity 1 31 0 1403 208 202 0 chr6 109267915 109268102 -80011452 + MLT2B1 LTR ERVL 3 151 -369 297 0 0 0 chr6 109268102 109268135 -80011419 + (TC)n Simple_repeat Simple_repeat 2 34 0 1403 208 202 0 chr6 109268135 109268288 -80011266 + MLT2B1 LTR ERVL 151 412 -108 258 313 73 22 chr6 109268705 109268884 -80010670 + MLT1J LTR MaLR 323 510 -1 436 309 60 13 chr6 109270106 109270255 -80009299 - MIR3 SINE MIR -30 178 23 228 149 0 0 chr6 109270842 109270889 -80008665 + (CAGAGA)n Simple_repeat Simple_repeat 1 47 0 1724 145 40 43 chr6 109270933 109271284 -80008270 + MER46B DNA MER2_type 11 235 -1 467 288 194 52 chr6 109272048 109272357 -80007197 - MLT1J2 LTR MaLR -23 427 75 31 44 0 0 chr6 109272463 109272508 -80007046 + AT_rich Low_complexity Low_complexity 1 45 0 1996 173 54 61 chr6 109273213 109273642 -80005912 + MSTB LTR MaLR 1 426 0 340 310 27 48 chr6 109274120 109274307 -80005247 + HERVL40 LTR ERVL 2316 2498 -3032 199 316 18 0 chr6 109274501 109274558 -80004996 - MIR3 SINE MIR -36 172 115 2100 280 53 47 chr6 109274561 109274716 -80004838 + HERVL40 LTR ERVL 2812 2965 -2565 399 158 12 0 chr6 109274716 109274798 -80004756 - L1MA3 LINE L1 0 6305 6223 2100 280 53 47 chr6 109274798 109275474 -80004080 + HERVL40 LTR ERVL 2965 3648 -1882 835 250 51 117 chr6 109275802 109275971 -80003583 + L1ME3 LINE L1 5593 5772 -390 2089 120 133 16 chr6 109275971 109276354 -80003200 - MSTA LTR MaLR 0 428 1 8680 170 7 31 chr6 109276354 109277970 -80001584 - MSTA-int LTR MaLR 0 1580 3 2088 119 129 21 chr6 109277973 109278359 -80001195 - MSTA LTR MaLR 0 428 1 835 250 51 117 chr6 109278359 109278757 -80000797 + L1ME3 LINE L1 5773 6127 -35 25 31 0 0 chr6 109279082 109279114 -80000440 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 109279556 109279577 -79999977 + AT_rich Low_complexity Low_complexity 1 21 0 753 301 65 0 chr6 109280702 109280918 -79998636 + MIR SINE MIR 18 247 -15 186 103 0 0 chr6 109280925 109280954 -79998600 + (TTA)n Simple_repeat Simple_repeat 2 30 0 244 167 0 0 chr6 109281847 109281895 -79997659 - Alu SINE Alu -1 301 254 2100 115 0 7 chr6 109282084 109282371 -79997183 - AluSg SINE Alu -25 285 1 213 108 0 0 chr6 109283026 109283063 -79996491 + (TA)n Simple_repeat Simple_repeat 2 38 0 229 273 15 0 chr6 109283067 109283133 -79996421 + MER103 DNA DNA 55 121 -45 287 250 57 86 chr6 109283388 109283528 -79996026 - MIR SINE MIR -4 258 123 2595 114 3 5 chr6 109283735 109284111 -79995443 + THE1C LTR MaLR 1 375 0 8421 121 151 4 chr6 109284111 109285488 -79994066 + THE1C-int LTR MaLR 1 1580 0 2474 101 2 56 chr6 109285488 109285884 -79993670 + THE1C LTR MaLR 1 375 0 283 364 15 0 chr6 109286066 109286198 -79993356 + L1MEc LINE L1 167 300 -6096 254 246 0 0 chr6 109287016 109287077 -79992477 + (AATTG)n Simple_repeat Simple_repeat 3 63 0 191 374 70 47 chr6 109287119 109287290 -79992264 - MIR3 SINE MIR -28 180 6 22 35 0 0 chr6 109287312 109287341 -79992213 + AT_rich Low_complexity Low_complexity 1 29 0 31 26 0 0 chr6 109288812 109288850 -79990704 + AT_rich Low_complexity Low_complexity 1 38 0 549 0 0 0 chr6 109288857 109288918 -79990636 + (TA)n Simple_repeat Simple_repeat 2 62 0 465 129 0 89 chr6 109288971 109289072 -79990482 - L1MA10 LINE L1 -735 5577 5486 3309 193 17 33 chr6 109289072 109289659 -79989895 + L1MA10 LINE L1 5584 6158 -176 206 0 0 65 chr6 109289659 109289690 -79989864 + (CAT)n Simple_repeat Simple_repeat 2 30 0 3309 193 17 33 chr6 109289690 109289855 -79989699 + L1MA10 LINE L1 6158 6324 -10 191 59 0 29 chr6 109290227 109290261 -79989293 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 510 294 12 19 chr6 109391660 109391820 -79887734 - MIR SINE MIR -22 240 82 5977 147 10 44 chr6 109392558 109393655 -79885899 + L1P LINE L1 3231 4290 -1856 1531 161 74 40 chr6 109393977 109394301 -79885253 + MER1B DNA MER1_type 3 337 0 3252 240 40 52 chr6 109394305 109395314 -79884240 + HERVL74 LTR ERVL 4246 5241 -444 588 220 43 14 chr6 109395336 109395477 -79884077 + HERVL74 LTR ERVL 5388 5532 -153 198 220 55 119 chr6 109395478 109395587 -79883967 - L3 LINE CR1 -397 1180 1079 1896 183 43 11 chr6 109395618 109396073 -79883481 + MER74A LTR ERVL 2 558 0 6571 196 26 14 chr6 109396451 109398642 -79880912 + L1MA7 LINE L1 3910 6120 -171 286 367 0 3 chr6 109400336 109400447 -79879107 + MIR SINE MIR 37 145 -63 484 299 45 13 chr6 109400597 109400751 -79878803 + MIR SINE MIR 1 159 -103 24 32 0 0 chr6 109400751 109400782 -79878772 + AT_rich Low_complexity Low_complexity 1 31 0 1920 153 120 30 chr6 109400984 109401377 -79878177 - MSTA LTR MaLR 0 428 1 184 255 21 0 chr6 109402751 109402798 -79876756 - L3 LINE CR1 -75 1502 1455 553 302 82 26 chr6 109402806 109403038 -79876516 - MIR SINE MIR 0 262 18 264 290 0 0 chr6 109403068 109403130 -79876424 - L3 LINE CR1 -175 1402 1341 1812 194 94 0 chr6 109403557 109403939 -79875615 + MSTB1 LTR MaLR 15 432 0 500 222 108 119 chr6 109404214 109404399 -79875155 - MER5A DNA MER1_type -6 183 1 334 221 90 0 chr6 109406311 109406433 -79873121 + MER69 DNA AcHobo 2382 2514 -12 338 266 133 44 chr6 109407588 109407746 -79871808 - MIR SINE MIR -25 237 66 258 32 0 0 chr6 109408234 109408265 -79871289 + (TG)n Simple_repeat Simple_repeat 2 32 0 236 293 108 64 chr6 109408267 109408424 -79871130 - MIR SINE MIR -14 248 85 1807 180 39 49 chr6 109408424 109408812 -79870742 + MLT1B LTR MaLR 1 384 -6 21 36 0 0 chr6 109409047 109409075 -79870479 + AT_rich Low_complexity Low_complexity 1 28 0 2900 48 0 0 chr6 109409697 109410069 -79869485 - L1P2 LINE L1 -521 5634 5263 1035 324 100 53 chr6 109410097 109410758 -79868796 + L2 LINE L2 2261 2952 -362 1281 191 0 16 chr6 109410758 109411014 -79868540 - L1M4 LINE L1 -1163 4983 4732 188 379 0 0 chr6 109411269 109411327 -79868227 + L2 LINE L2 3187 3244 -28 897 238 0 5 chr6 109411350 109411556 -79867998 - L1M4 LINE L1 -2086 4060 3856 30 27 0 0 chr6 109411808 109411845 -79867709 + AT_rich Low_complexity Low_complexity 1 37 0 319 210 31 43 chr6 109411889 109412051 -79867503 + (TA)n Simple_repeat Simple_repeat 1 160 0 559 188 40 34 chr6 109412149 109412298 -79867256 - L1MA9 LINE L1 -153 6159 6010 1480 196 11 7 chr6 109412545 109412830 -79866724 - AluJo SINE Alu -26 286 1 309 197 15 0 chr6 109413280 109413346 -79866208 - L1MC4 LINE L1 0 8042 7976 8040 168 99 21 chr6 109413490 109416300 -79863254 + L1PBa LINE L1 928 3952 -2910 261 0 0 0 chr6 109419021 109419050 -79860504 + (A)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chr6 109422053 109422075 -79857479 + (T)n Simple_repeat Simple_repeat 1 22 0 2003 161 20 13 chr6 109422820 109423204 -79856350 - MLT2A2 LTR ERVL -149 304 1 38 51 0 0 chr6 109424301 109424360 -79855194 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr6 109424977 109425001 -79854553 + AT_rich Low_complexity Low_complexity 1 24 0 4584 177 22 45 chr6 109425130 109426147 -79853407 - L1MA9 LINE L1 0 6312 5320 1027 101 7 0 chr6 109426148 109426297 -79853257 - L1PA10 LINE L1 0 6168 6019 430 209 0 18 chr6 109426468 109426578 -79852976 - L1MA9 LINE L1 -815 5331 5224 1865 179 65 43 chr6 109426583 109427075 -79852479 - L1MA9 LINE L1 -1395 4751 4249 1297 81 17 0 chr6 109427076 109427250 -79852304 - AluY SINE Alu -15 296 120 7775 230 54 31 chr6 109427357 109427729 -79851825 - L1M4c LINE L1 -1518 4864 4502 1556 183 0 13 chr6 109427729 109428029 -79851525 - AluY SINE Alu -14 297 2 7775 230 54 31 chr6 109428029 109429735 -79849819 - L1M4c LINE L1 -1880 4502 2837 2491 65 0 0 chr6 109429735 109430045 -79849509 + AluY SINE Alu 1 310 -1 360 0 0 0 chr6 109430045 109430085 -79849469 + (TA)n Simple_repeat Simple_repeat 2 41 0 7775 230 54 31 chr6 109430085 109430433 -79849121 - L1M4c LINE L1 -3544 2838 2379 249 286 14 0 chr6 109430437 109430507 -79849047 + Tigger5 DNA MER2_type 4 74 -2249 1104 234 54 27 chr6 109430508 109430879 -79848675 - L1M4c LINE L1 -4876 1508 1128 240 187 110 55 chr6 109430894 109430985 -79848569 - L1MDa LINE L1 -3908 2632 2537 2338 242 52 21 chr6 109430989 109432199 -79847355 - L1MDa LINE L1 -4762 1709 332 195 42 0 0 chr6 109433127 109433151 -79846403 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 71 0 0 chr6 109433672 109433714 -79845840 + AT_rich Low_complexity Low_complexity 1 42 0 546 310 79 70 chr6 109433957 109434425 -79845129 - L2 LINE L2 -1501 1813 1342 499 292 60 22 chr6 109434485 109434670 -79844884 - L1MDa LINE L1 -6329 211 20 9228 38 0 1 chr6 109436936 109438837 -79840717 - L1PA3 LINE L1 -3 6152 4254 614 74 0 0 chr6 109438973 109439054 -79840500 - L1P LINE L1 -1517 4629 4549 12073 39 0 1 chr6 109439054 109440545 -79839009 + L1P LINE L1 3055 4544 -1602 248 312 29 77 chr6 109441276 109441446 -79838108 + MIR3 SINE MIR 35 196 -12 2556 149 15 31 chr6 109442369 109442824 -79836730 + MER83 LTR ERV1 1 448 0 275 229 46 83 chr6 109443088 109443197 -79836357 + MIR SINE MIR 88 192 -70 29 47 0 0 chr6 109443343 109443386 -79836168 + AT_rich Low_complexity Low_complexity 1 43 0 1567 201 0 7 chr6 109445652 109445941 -79833613 + AluJo SINE Alu 1 287 -25 3620 148 60 3 chr6 109446377 109447372 -79832182 + L1PA16 LINE L1 4836 5885 -281 2086 148 45 8 chr6 109447656 109448033 -79831521 + L1PA16 LINE L1 5767 6157 -9 290 174 29 0 chr6 109448066 109448135 -79831419 - L1MC4 LINE L1 -845 7197 7127 1631 193 30 25 chr6 109448392 109448754 -79830800 + MLT1A1 LTR MaLR 2 365 0 252 311 189 8 chr6 109449459 109449591 -79829963 - MIR SINE MIR -5 257 102 547 292 104 0 chr6 109449828 109449982 -79829572 + MER5B DNA MER1_type 1 170 -8 717 314 26 34 chr6 109450776 109451040 -79828514 + MIR SINE MIR 1 262 0 23 54 0 0 chr6 109451201 109451238 -79828316 + AT_rich Low_complexity Low_complexity 1 37 0 1082 199 167 78 chr6 109452115 109452178 -79827376 - MER67D LTR ERV1 0 514 458 3803 182 53 4 chr6 109452178 109452872 -79826682 + MER44D DNA MER2_type 2 601 -4 1082 199 167 78 chr6 109452872 109453280 -79826274 - MER67D LTR ERV1 -56 458 1 205 333 59 37 chr6 109453794 109453929 -79825625 + MER5B DNA MER1_type 2 139 -39 * 338 259 252 0 chr6 109453923 109454070 -79825484 + MER5A DNA MER1_type 6 189 0 318 289 10 65 chr6 109455038 109455239 -79824315 + L1MCa LINE L1 2 191 -6235 1158 266 92 34 chr6 109455615 109456428 -79823126 + L1MCa LINE L1 302 1171 -4890 2282 123 19 3 chr6 109456563 109456929 -79822625 - L1PA16 LINE L1 -8 6158 5787 27 49 0 0 chr6 109457942 109457983 -79821571 + AT_rich Low_complexity Low_complexity 1 41 0 35 98 0 0 chr6 109458078 109458190 -79821364 + AT_rich Low_complexity Low_complexity 1 112 0 306 73 0 0 chr6 109458300 109458341 -79821213 + (CA)n Simple_repeat Simple_repeat 2 42 0 2007 175 35 45 chr6 109459196 109459618 -79819936 + Tigger2a DNA MER2_type 3 420 -14 423 271 93 0 chr6 109459696 109459836 -79819718 - MIR SINE MIR 0 262 110 237 348 59 0 chr6 109460309 109460444 -79819110 - HAL1 LINE L1 -1837 670 528 1121 220 51 57 chr6 109460649 109461021 -79818533 - MLT1A2 LTR MaLR -1 373 4 443 147 0 0 chr6 109461065 109461133 -79818421 - L1MC4a LINE L1 -226 7582 7515 2020 141 34 37 chr6 109461136 109461510 -79818044 + THE1C LTR MaLR 1 380 -48 2787 92 25 5 chr6 109461510 109461910 -79817644 - L1PA10 LINE L1 -5 6163 5756 2020 141 34 37 chr6 109461910 109461959 -79817595 + THE1C LTR MaLR 380 428 0 1958 241 105 24 chr6 109461969 109462595 -79816959 - L1MC4a LINE L1 -302 7506 6830 636 246 0 0 chr6 109462646 109462768 -79816786 + AluJb SINE Alu 166 287 -25 345 175 0 0 chr6 109462778 109462841 -79816713 - L1MC3 LINE L1 -47 7738 7676 2113 149 28 25 chr6 109462841 109463204 -79816350 - THE1B LTR MaLR 0 364 1 3678 73 0 10 chr6 109463204 109463686 -79815868 - THE1B-int LTR MaLR 0 1580 1104 665 169 15 15 chr6 109463813 109463949 -79815605 + AluJb SINE Alu 162 297 -15 2856 231 64 47 chr6 109463950 109464128 -79815426 - L1MC3 LINE L1 -1438 6347 6173 1478 218 23 13 chr6 109464128 109464431 -79815123 - AluJo SINE Alu -6 306 1 2856 231 64 47 chr6 109464431 109465143 -79814411 - L1MC3 LINE L1 -1612 6173 5442 1421 218 104 45 chr6 109465170 109465204 -79814350 - MLT1C LTR MaLR -2 465 434 2294 45 7 7 chr6 109465204 109465494 -79814060 + AluY SINE Alu 1 290 -21 1421 218 104 45 chr6 109465494 109465882 -79813672 - MLT1C LTR MaLR -33 434 18 1109 274 63 60 chr6 109465882 109466928 -79812626 - L1MEc LINE L1 -3625 2590 1581 791 304 58 37 chr6 109467020 109467455 -79812099 - L1MC3 LINE L1 -1186 4960 4536 213 65 0 0 chr6 109467455 109467486 -79812068 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1001 26 0 0 chr6 109467486 109467603 -79811951 - L1PA4 LINE L1 -18 6137 6021 2121 73 0 0 chr6 109467603 109467877 -79811677 - AluY SINE Alu -37 274 1 791 304 58 37 chr6 109467877 109468232 -79811322 - L1MC3 LINE L1 -1609 4537 4151 408 303 144 11 chr6 109468410 109468630 -79810924 - L1 LINE L1 -2223 3923 3654 2454 111 7 25 chr6 109468630 109469034 -79810520 - L1PA13 LINE L1 0 6163 5767 408 303 144 11 chr6 109469034 109469124 -79810430 - L1 LINE L1 -2492 3654 3577 205 264 0 45 chr6 109469500 109469610 -79809944 + T-rich Low_complexity Low_complexity 1 105 0 231 267 81 29 chr6 109469715 109469887 -79809667 - L1 LINE L1 -3689 2457 2277 2106 173 134 7 chr6 109470418 109470828 -79808726 + MLT2B2 LTR ERVL 54 515 0 402 232 0 0 chr6 109470832 109470914 -79808640 - MER58A DNA MER1_type 0 128 47 250 303 11 22 chr6 109470942 109471031 -79808523 - HAL1b LINE L1 -750 598 511 7003 45 1 1 chr6 109471614 109473088 -79806466 - L1PA5 LINE L1 -1 6153 4687 684 60 0 0 chr6 109473088 109473171 -79806383 + THE1C LTR MaLR 293 375 0 4945 153 45 9 chr6 109474495 109475388 -79804166 - L1MA8 LINE L1 -1 6290 5366 7556 20 2 0 chr6 109476589 109477671 -79801883 + L1PA3 LINE L1 5083 6166 0 21 67 0 0 chr6 109479641 109479671 -79799883 + AT_rich Low_complexity Low_complexity 1 30 0 290 313 194 6 chr6 109479749 109479909 -79799645 + MIR SINE MIR 17 206 -56 562 275 116 39 chr6 109479918 109480376 -79799178 - L1M4 LINE L1 -2865 3281 2789 25 51 0 0 chr6 109480696 109480735 -79798819 + AT_rich Low_complexity Low_complexity 1 39 0 2333 76 0 19 chr6 109481472 109481789 -79797765 - AluY SINE Alu 0 311 1 1262 244 44 19 chr6 109482663 109482982 -79796572 - L1ME LINE L1 -402 5764 5438 413 57 0 0 chr6 109485055 109485108 -79794446 + MADE1 DNA Mariner 28 80 0 2242 135 42 20 chr6 109485741 109486097 -79793457 - THE1B LTR MaLR 0 364 1 510 352 83 26 chr6 109488910 109489379 -79790175 + L2 LINE L2 2818 3313 0 2225 120 7 0 chr6 109489974 109490283 -79789271 - AluSq SINE Alu -2 311 1 26 30 0 0 chr6 109490868 109490901 -79788653 + AT_rich Low_complexity Low_complexity 1 33 0 489 219 105 0 chr6 109491113 109491227 -79788327 - FLAM_C SINE Alu -12 131 6 3015 163 57 18 chr6 109491702 109492303 -79787251 + L1MC1 LINE L1 5710 6333 0 322 284 59 54 chr6 109492304 109492526 -79787028 + L1MC4 LINE L1 4739 4961 -1185 22 70 0 0 chr6 109492648 109492691 -79786863 + AT_rich Low_complexity Low_complexity 1 43 0 1771 241 127 3 chr6 109492765 109493358 -79786196 + L1MC4 LINE L1 5254 5919 -1889 22 35 0 0 chr6 109493415 109493444 -79786110 + AT_rich Low_complexity Low_complexity 1 29 0 874 299 97 35 chr6 109493674 109494457 -79785097 + L1MC4 LINE L1 7211 8042 0 629 339 72 24 chr6 109494883 109495302 -79784252 - MLT1K LTR MaLR -148 440 2 387 312 26 13 chr6 109496297 109496451 -79783103 - MLT1I LTR MaLR -235 174 19 433 243 28 0 chr6 109496687 109496794 -79782760 - MER58C DNA MER1_type 0 215 106 247 294 0 49 chr6 109496829 109496931 -79782623 - MER58C DNA MER1_type -107 108 12 516 281 76 73 chr6 109497340 109497657 -79781897 - L1MDb LINE L1 -5315 1228 911 191 306 48 16 chr6 109497706 109497768 -79781786 - MER5A DNA MER1_type -63 126 63 228 343 33 82 chr6 109498212 109498515 -79781039 - L1MDb LINE L1 -6235 305 18 2498 52 3 0 chr6 109498738 109499043 -79780511 - L1P3 LINE L1 -450 5704 5399 1072 73 13 0 chr6 109499043 109499192 -79780362 + L1PA7 LINE L1 6002 6153 -1 2241 77 0 26 chr6 109499507 109499817 -79779737 - AluY SINE Alu -9 302 1 247 328 41 31 chr6 109503046 109503336 -79776218 - L1M4 LINE L1 -934 5212 4920 2331 75 0 28 chr6 109503408 109503727 -79775827 - AluY SINE Alu -1 310 1 292 272 29 10 chr6 109503883 109503986 -79775568 - L1M4 LINE L1 -1542 4604 4500 1631 175 7 24 chr6 109504085 109504377 -79775177 - AluJb SINE Alu -21 291 5 896 197 21 10 chr6 109504664 109504857 -79774697 - MER3 DNA MER1_type -1 208 14 1322 245 90 56 chr6 109504934 109505552 -79774002 - MLT1E3 LTR MaLR 0 624 1 310 324 25 29 chr6 109505602 109505840 -79773714 - L1M4 LINE L1 -2122 4024 3788 544 155 0 17 chr6 109505924 109506040 -79773514 + (TA)n Simple_repeat Simple_repeat 1 114 0 364 311 129 40 chr6 109506130 109506378 -79773176 + L1MEd LINE L1 647 916 -5289 330 296 51 23 chr6 109506457 109506633 -79772921 + L1MEd LINE L1 1041 1221 -4984 1057 243 92 27 chr6 109506691 109507029 -79772525 - MLT1C LTR MaLR -29 438 79 3085 144 16 13 chr6 109507057 109507604 -79771950 - L1PB3 LINE L1 -2 6152 5604 46 19 0 0 chr6 109507741 109507794 -79771760 + AT_rich Low_complexity Low_complexity 1 53 0 249 314 51 0 chr6 109507812 109507930 -79771624 + L1MEd LINE L1 1362 1485 -4730 457 248 94 74 chr6 109508218 109508569 -79770985 - L1MEd LINE L1 -4867 1252 895 324 310 48 7 chr6 109508579 109508724 -79770830 - L1MEd LINE L1 -5294 825 675 391 313 69 0 chr6 109508964 109509095 -79770459 - L1MEd LINE L1 -5734 385 246 394 265 48 24 chr6 109509125 109509291 -79770263 - L1MEd LINE L1 -5947 172 3 3237 154 7 38 chr6 109509555 109510112 -79769442 - MER44D DNA MER2_type -7 598 4 22 0 0 0 chr6 109510297 109510319 -79769235 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr6 109510571 109510600 -79768954 + AT_rich Low_complexity Low_complexity 1 29 0 1444 129 8 17 chr6 109511016 109511257 -79768297 + AluSg/x SINE Alu 73 311 -1 1174 254 93 0 chr6 109512098 109512389 -79767165 - 7SLRNA srpRNA srpRNA -2 318 1 1854 142 10 10 chr6 109514253 109514564 -79764990 + AluSq SINE Alu 1 311 -2 203 375 23 0 chr6 109515655 109515743 -79763811 - L2 LINE L2 -44 3228 3139 242 281 0 0 chr6 109516533 109516590 -79762964 - L2 LINE L2 -668 2646 2590 29 28 0 0 chr6 109517138 109517174 -79762380 + AT_rich Low_complexity Low_complexity 1 36 0 550 303 90 0 chr6 109517529 109517740 -79761814 + MIR SINE MIR 18 247 -15 306 342 34 14 chr6 109517787 109518107 -79761447 + L1M1 LINE L1 2702 3104 -4642 272 300 100 7 chr6 109518491 109518641 -79760913 + L1MEd LINE L1 2240 2403 -3993 303 252 19 19 chr6 109518702 109518805 -79760749 + L1MEd LINE L1 2541 2643 -3572 526 379 40 9 chr6 109519622 109519970 -79759584 + HERVL LTR ERVL 4126 4484 -1170 262 306 62 21 chr6 109520106 109520250 -79759304 + HERVL LTR ERVL 4656 4805 -849 270 297 54 36 chr6 109520305 109520416 -79759138 + HERVL LTR ERVL 4911 5023 -631 2380 196 35 69 chr6 109520825 109521478 -79758076 + L1MB8 LINE L1 5539 6169 -9 22 0 0 0 chr6 109521607 109521629 -79757925 + AT_rich Low_complexity Low_complexity 1 22 0 290 228 0 0 chr6 109521668 109521725 -79757829 + L1MB3 LINE L1 5962 6018 -165 575 154 26 17 chr6 109521733 109521850 -79757704 - L1MA10 LINE L1 -1 6333 6216 832 126 7 0 chr6 109521869 109522004 -79757550 + L1MB3 LINE L1 6048 6183 0 253 202 0 24 chr6 109522007 109522091 -79757463 + GA-rich Low_complexity Low_complexity 3 84 0 24 0 0 0 chr6 109522153 109522177 -79757377 + AT_rich Low_complexity Low_complexity 1 24 0 227 381 157 0 chr6 109523200 109523347 -79756207 + MIR3 SINE MIR 32 201 -7 23 0 0 0 chr6 109523649 109523672 -79755882 + AT_rich Low_complexity Low_complexity 1 23 0 541 285 147 44 chr6 109524766 109525290 -79754264 - L2 LINE L2 0 3313 2742 563 240 8 0 chr6 109525290 109525411 -79754143 + MER94 DNA DNA 1 122 -12 604 339 57 38 chr6 109525442 109525808 -79753746 - L2 LINE L2 -575 2739 2367 2108 112 10 0 chr6 109526992 109527286 -79752268 + AluSx SINE Alu 1 297 -15 397 361 28 0 chr6 109527445 109527625 -79751929 + MIR SINE MIR 72 256 -6 27 0 0 0 chr6 109527735 109527762 -79751792 + AT_rich Low_complexity Low_complexity 1 27 0 245 271 0 0 chr6 109527849 109527919 -79751635 + (TA)n Simple_repeat Simple_repeat 2 71 0 2884 113 30 3 chr6 109528313 109528897 -79750657 - L1PA11 LINE L1 -469 5705 5105 3140 108 13 0 chr6 109528898 109529360 -79750194 + L1PA11 LINE L1 5705 6172 -2 1324 172 49 32 chr6 109529360 109529668 -79749886 + L1MB8 LINE L1 5860 6172 -6 1889 190 6 11 chr6 109530041 109530404 -79749150 - MLT1A1 LTR MaLR -1 364 4 369 297 124 25 chr6 109530407 109530609 -79748945 - MIR SINE MIR -35 227 6 750 256 31 15 chr6 109531093 109531288 -79748266 + MLT1A1 LTR MaLR 168 365 0 344 298 109 35 chr6 109531289 109532013 -79747541 - L1MC/D LINE L1 -743 5403 4795 437 253 98 114 chr6 109532106 109532351 -79747203 + MIR SINE MIR 12 252 -10 212 292 83 31 chr6 109534021 109534117 -79745437 - MIR SINE MIR -150 112 12 500 0 17 0 chr6 109534197 109534257 -79745297 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 329 261 160 0 chr6 109535842 109535961 -79743593 - HAL1 LINE L1 -1788 719 582 426 333 74 45 chr6 109536045 109536332 -79743222 - HAL1 LINE L1 -2029 478 178 4176 96 6 86 chr6 109536332 109537054 -79742500 - MER4A LTR ERV1 0 664 1 426 333 74 45 chr6 109537054 109537102 -79742452 - HAL1 LINE L1 -2329 178 133 180 111 0 0 chr6 109537303 109537330 -79742224 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 326 318 102 25 chr6 109537756 109538039 -79741515 + L2 LINE L2 2976 3280 -33 242 316 59 59 chr6 109538512 109538699 -79740855 - L2 LINE L2 -781 2533 2347 26 50 0 0 chr6 109539610 109539650 -79739904 + AT_rich Low_complexity Low_complexity 1 40 0 468 262 34 56 chr6 109540112 109540345 -79739209 + L1MC4 LINE L1 6803 7030 -1012 357 259 99 22 chr6 109541007 109541239 -79738315 + L1MEc LINE L1 1232 1481 -4915 1327 124 124 104 chr6 109541268 109541615 -79737939 + Tigger3b DNA MER2_type 59 412 -819 8394 225 74 43 chr6 109541619 109542047 -79737507 + L1MA9 LINE L1 2689 3103 -4628 334 80 20 0 chr6 109542047 109542097 -79737457 - MADE1 DNA Mariner -1 79 29 8394 225 74 43 chr6 109542097 109545176 -79734378 + L1MA9 LINE L1 3103 6087 -1644 198 0 0 0 chr6 109545176 109545198 -79734356 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7573 18 7 14 chr6 109545198 109546356 -79733198 - L1PA4 LINE L1 -18 6137 4982 8394 225 74 43 chr6 109546356 109547137 -79732417 + L1MA9 LINE L1 6087 6843 -888 267 103 0 0 chr6 109547137 109547176 -79732378 + (CA)n Simple_repeat Simple_repeat 2 40 0 8394 225 74 43 chr6 109547176 109547685 -79731869 + L1MA9 LINE L1 6843 7731 0 215 342 84 32 chr6 109547729 109547919 -79731635 - L2 LINE L2 -1529 1785 1586 866 126 0 109 chr6 109548421 109548595 -79730959 + MER46A DNA MER2_type 1 155 -81 258 32 0 0 chr6 109548641 109548672 -79730882 + (CA)n Simple_repeat Simple_repeat 2 32 0 180 364 17 8 chr6 109549140 109549258 -79730296 - L2 LINE L2 -1483 1831 1713 1360 183 41 49 chr6 109549293 109549676 -79729878 + MLT1C LTR MaLR 1 388 -2 221 362 40 20 chr6 109549861 109550010 -79729544 - L2 LINE L2 -1870 1444 1293 35 0 0 0 chr6 109550141 109550176 -79729378 + AT_rich Low_complexity Low_complexity 1 35 0 186 246 0 0 chr6 109550886 109550947 -79728607 + (TA)n Simple_repeat Simple_repeat 2 62 0 595 309 58 5 chr6 109551151 109551339 -79728215 + MIR SINE MIR 4 201 -61 1163 203 66 8 chr6 109551349 109551605 -79727949 + AluJo SINE Alu 24 294 -18 2072 113 7 0 chr6 109551615 109551906 -79727648 + AluSc SINE Alu 1 293 -16 25 0 0 0 chr6 109551946 109551971 -79727583 + AT_rich Low_complexity Low_complexity 1 25 0 199 372 47 0 chr6 109551983 109552069 -79727485 + L2 LINE L2 2397 2486 -828 581 339 40 0 chr6 109552564 109552788 -79726766 - MIR SINE MIR -28 234 2 210 185 0 56 chr6 109552936 109552990 -79726564 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 607 163 10 0 chr6 109553190 109553288 -79726266 - L1M2 LINE L1 -565 5726 5628 204 231 0 0 chr6 109553807 109553859 -79725695 + T-rich Low_complexity Low_complexity 1 52 0 14684 20 0 0 chr6 109553872 109556365 -79723189 - L1HS LINE L1 -3 6152 3660 12603 29 0 0 chr6 109556364 109557888 -79721666 + L1HS LINE L1 2145 3668 -2478 * 30 27 0 0 chr6 109558111 109558148 -79721406 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr6 109559414 109559442 -79720112 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 109559467 109559497 -79720057 + AT_rich Low_complexity Low_complexity 1 30 0 2546 52 0 3 chr6 109559853 109560161 -79719393 + AluY SINE Alu 1 307 -4 1804 164 0 3 chr6 109560483 109560787 -79718767 - AluJb SINE Alu -8 304 2 314 290 35 28 chr6 109561167 109561312 -79718242 + LTR67 LTR ERVL 405 550 -7 903 251 60 4 chr6 109561712 109561963 -79717591 + MLT1J1 LTR MaLR 44 308 -138 1661 175 0 4 chr6 109562024 109562304 -79717250 + AluJb SINE Alu 1 279 -33 252 0 0 0 chr6 109562307 109562335 -79717219 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 252 0 0 0 chr6 109562345 109562373 -79717181 + (T)n Simple_repeat Simple_repeat 1 28 0 1587 201 43 0 chr6 109563060 109563359 -79716195 - AluJo SINE Alu 0 312 1 4446 77 31 5 chr6 109563424 109564429 -79715125 + MER11A LTR ERVK 1 1266 0 213 310 78 62 chr6 109564674 109564803 -79714751 + L2 LINE L2 3137 3267 -5 284 189 42 11 chr6 109567090 109567185 -79712369 + (TA)n Simple_repeat Simple_repeat 1 98 0 1573 215 29 5 chr6 109567194 109567580 -79711974 + L1MB4 LINE L1 5786 6180 0 27 0 0 0 chr6 109567956 109567983 -79711571 + AT_rich Low_complexity Low_complexity 1 27 0 1803 126 4 18 chr6 109568883 109569161 -79710393 + L1PB1 LINE L1 5520 5793 -358 215 164 15 45 chr6 109569161 109569228 -79710326 + (TA)n Simple_repeat Simple_repeat 2 66 0 2132 113 42 17 chr6 109569231 109569243 -79710311 + L1PB1 LINE L1 5785 5795 -356 243 0 0 0 chr6 109569243 109569270 -79710284 + (CA)n Simple_repeat Simple_repeat 1 27 0 2132 113 42 17 chr6 109569270 109569612 -79709942 + L1PB1 LINE L1 5795 6148 -3 3117 200 123 95 chr6 109570024 109570591 -79708963 - L1MC3 LINE L1 -25 7760 7211 300 247 34 22 chr6 109570591 109570680 -79708874 - MLT1F1 LTR MaLR -443 124 35 3117 200 123 95 chr6 109570680 109571143 -79708411 - L1MC3 LINE L1 -574 7211 6610 1337 230 36 39 chr6 109571154 109571510 -79708044 - MER82 DNA MER2_type -57 596 242 240 137 0 0 chr6 109571519 109571570 -79707984 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 347 164 0 0 chr6 109571581 109571636 -79707918 + L1MC3 LINE L1 6887 6941 -844 236 190 152 13 chr6 109571649 109571728 -79707826 + L1MC4 LINE L1 6614 6703 -1339 1131 209 8 8 chr6 109571735 109571979 -79707575 - MER82 DNA MER2_type -408 245 2 1089 130 141 78 chr6 109571979 109572248 -79707306 - L1MC3 LINE L1 -1177 6608 6323 4774 100 5 0 chr6 109572259 109572919 -79706635 - THE1B-int LTR MaLR -917 663 1 1993 139 54 31 chr6 109572922 109573275 -79706279 - THE1B LTR MaLR -3 361 1 8721 247 17 9 chr6 109573287 109575599 -79703955 + L1PA15 LINE L1 1615 3944 -2202 1708 232 177 34 chr6 109575599 109576441 -79703113 - MER52A LTR ERV1 0 1278 214 388 292 136 102 chr6 109576932 109577404 -79702150 + L1M2 LINE L1 566 1053 -5796 5919 182 35 7 chr6 109577444 109579608 -79699946 + L1PA15 LINE L1 3942 6164 -1 365 284 16 24 chr6 109579829 109579956 -79699598 + MLT1J LTR MaLR 39 164 -347 966 256 49 67 chr6 109580023 109580453 -79699101 + MLT2B1 LTR ERVL 3 424 -40 244 108 77 62 chr6 109580476 109580541 -79699013 + MLT2C1 LTR ERVL 332 397 0 1134 211 65 11 chr6 109580545 109580938 -79698616 + MLT1-int LTR MaLR 5 554 -817 4084 51 4 0 chr6 109582147 109582660 -79696894 + L1PA7 LINE L1 5639 6153 -1 2590 171 25 0 chr6 109582660 109583137 -79696417 + L1MC1 LINE L1 5841 6332 -1 24 53 0 0 chr6 109583153 109583191 -79696363 + AT_rich Low_complexity Low_complexity 1 38 0 471 273 0 43 chr6 109583438 109583577 -79695977 - MIR SINE MIR -10 252 120 248 238 25 25 chr6 109583660 109583740 -79695814 - L1P LINE L1 -2371 3775 3696 273 270 24 24 chr6 109583938 109584064 -79695490 - L1P LINE L1 -3748 2398 2273 1745 160 17 7 chr6 109584268 109584280 -79695274 - AluJb SINE Alu -15 297 287 297 0 0 0 chr6 109584280 109584313 -79695241 + (TG)n Simple_repeat Simple_repeat 2 34 0 1745 160 17 7 chr6 109584313 109584593 -79694961 - AluJb SINE Alu -25 287 2 659 313 45 55 chr6 109585048 109585651 -79693903 - HAL1b LINE L1 -697 651 55 243 0 0 0 chr6 109586505 109586532 -79693022 + (T)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr6 109587097 109587120 -79692434 + AT_rich Low_complexity Low_complexity 1 23 0 332 313 69 8 chr6 109587186 109587317 -79692237 + L2 LINE L2 3171 3309 -4 275 377 0 0 chr6 109589807 109589937 -79689617 + C-rich Low_complexity Low_complexity 1 130 0 21 71 0 0 chr6 109592625 109592667 -79686887 + AT_rich Low_complexity Low_complexity 1 42 0 230 303 61 0 chr6 109593805 109593871 -79685683 - MIR SINE MIR -103 105 36 22 0 0 0 chr6 109594377 109594399 -79685155 + AT_rich Low_complexity Low_complexity 1 22 0 197 301 81 16 chr6 109594891 109595014 -79684540 - L2 LINE L2 -20 3293 3163 185 0 40 0 chr6 109595236 109595261 -79684293 + (TTG)n Simple_repeat Simple_repeat 2 27 0 274 227 0 107 chr6 109596390 109596465 -79683089 - HERVL68 LTR ERVL -594 2443 2377 7967 273 48 52 chr6 109596584 109599435 -79680119 - HERVL68 LTR ERVL -2605 2925 88 421 182 52 0 chr6 109599659 109599736 -79679818 - HERVL68 LTR ERVL -5447 83 3 1418 223 110 21 chr6 109599743 109600161 -79679393 - LTR40b LTR ERVL -4 458 4 210 402 40 69 chr6 109600654 109600930 -79678624 + L2 LINE L2 3004 3271 -1 236 196 20 0 chr6 109602297 109602348 -79677206 + MADE1 DNA Mariner 1 52 -28 834 290 36 69 chr6 109602903 109603396 -79676158 + L1ME1 LINE L1 17 493 -5930 929 251 68 34 chr6 109603487 109603876 -79675678 + L1ME1 LINE L1 1184 1584 -4891 643 272 60 23 chr6 109603890 109604155 -79675399 + L1ME1 LINE L1 3202 3476 -3465 2747 235 66 31 chr6 109604155 109605081 -79674473 + L1ME1 LINE L1 6010 7128 -1 322 214 137 8 chr6 109605734 109605865 -79673689 + MER5C DNA MER1_type 176 323 -1 257 241 0 19 chr6 109607793 109607901 -79671653 + (CATATA)n Simple_repeat Simple_repeat 6 111 0 313 266 13 0 chr6 109609156 109609235 -79670319 + GA-rich Low_complexity Low_complexity 1 80 0 33 0 0 0 chr6 109609572 109609605 -79669949 + AT_rich Low_complexity Low_complexity 1 33 0 242 79 63 16 chr6 109609605 109609668 -79669886 + (TTATA)n Simple_repeat Simple_repeat 3 68 0 25 31 0 0 chr6 109609668 109609700 -79669854 + AT_rich Low_complexity Low_complexity 1 32 0 298 101 37 46 chr6 109609805 109609914 -79669640 + (TATAA)n Simple_repeat Simple_repeat 5 112 0 422 133 12 52 chr6 109609931 109610104 -79669450 + (TATAA)n Simple_repeat Simple_repeat 3 168 0 387 259 252 0 chr6 109610849 109610996 -79668558 - MER5A DNA MER1_type -2 187 4 330 308 64 6 chr6 109611216 109611373 -79668181 - MIR SINE MIR -63 145 1 427 366 87 46 chr6 109612608 109613194 -79666360 + L2 LINE L2 2662 3271 -1 372 308 224 30 chr6 109613447 109613840 -79665714 + L2 LINE L2 2844 3312 -1 206 183 33 0 chr6 109613953 109614013 -79665541 + CT-rich Low_complexity Low_complexity 3 64 0 22 0 0 0 chr6 109614092 109614114 -79665440 + AT_rich Low_complexity Low_complexity 1 22 0 226 304 167 59 chr6 109615147 109615249 -79664305 + L2 LINE L2 3127 3239 -33 24 0 0 0 chr6 109616389 109616413 -79663141 + AT_rich Low_complexity Low_complexity 1 24 0 400 298 0 0 chr6 109616756 109616860 -79662694 - MIR SINE MIR -58 204 101 2159 59 28 7 chr6 109617065 109617353 -79662201 - AluY SINE Alu -15 296 3 26 0 0 0 chr6 109618717 109618743 -79660811 + AT_rich Low_complexity Low_complexity 1 26 0 206 308 66 0 chr6 109619672 109619763 -79659791 + MER91A DNA MER1_type 20 116 -80 475 213 121 54 chr6 109620139 109620216 -79659338 + MER112 DNA MER1_type 1 71 -185 210 118 0 0 chr6 109620216 109620250 -79659304 + (CA)n Simple_repeat Simple_repeat 2 35 0 475 213 121 54 chr6 109620250 109620411 -79659143 + MER112 DNA MER1_type 71 255 -1 354 293 67 56 chr6 109620432 109620754 -79658800 + L2 LINE L2 2924 3301 -12 308 219 98 12 chr6 109621078 109621160 -79658394 - MER69 DNA AcHobo -3 2523 2435 358 319 213 0 chr6 109621167 109621355 -79658199 - MER69 DNA AcHobo -2298 228 1 2075 235 21 12 chr6 109621852 109622333 -79657221 - MLT1D LTR MaLR 0 505 21 686 298 88 13 chr6 109622879 109623107 -79656447 + MIR SINE MIR 14 258 -4 312 305 130 15 chr6 109623873 109624004 -79655550 - MIR SINE MIR -5 257 112 1272 244 22 4 chr6 109624022 109624293 -79655261 - MER45B DNA AcHobo -764 276 1 223 279 165 0 chr6 109624478 109624557 -79654997 - MER5C DNA MER1_type 0 324 233 401 168 177 26 chr6 109624576 109624689 -79654865 - MER5C DNA MER1_type -194 130 1 1500 220 7 7 chr6 109625389 109625680 -79653874 + AluJo SINE Alu 1 291 -21 26 74 0 0 chr6 109625785 109625839 -79653715 + AT_rich Low_complexity Low_complexity 1 54 0 2493 130 3 8 chr6 109625977 109626354 -79653200 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr6 109627315 109627337 -79652217 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 109627419 109627441 -79652113 + AT_rich Low_complexity Low_complexity 1 22 0 2209 97 0 3 chr6 109627696 109627994 -79651560 + AluY SINE Alu 1 297 -14 26 50 0 0 chr6 109628126 109628166 -79651388 + AT_rich Low_complexity Low_complexity 1 40 0 307 328 8 56 chr6 109628457 109628582 -79650972 - L2 LINE L2 0 3272 3154 252 368 14 42 chr6 109628685 109628829 -79650725 - L2 LINE L2 0 3272 3133 480 291 20 39 chr6 109628975 109629178 -79650376 + MIR SINE MIR 64 262 0 316 300 78 78 chr6 109629344 109629777 -79649777 - L1M4 LINE L1 -2969 3177 2745 507 110 55 0 chr6 109629801 109629892 -79649662 - L1PA13 LINE L1 -2 6161 6066 231 36 0 0 chr6 109629938 109629966 -79649588 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 760 191 0 0 chr6 109629973 109630114 -79649440 - FLAM_C SINE Alu -2 141 1 924 164 36 0 chr6 109630872 109631037 -79648517 + FRAM SINE Alu 1 170 -6 1665 181 77 3 chr6 109631108 109631446 -79648108 + MER47A DNA MER2_type 4 366 0 184 345 35 0 chr6 109633834 109633892 -79645662 - L3 LINE CR1 -3 1574 1515 431 292 49 0 chr6 109634055 109634199 -79645355 - MARNA DNA Mariner -345 241 91 258 287 61 35 chr6 109634104 109634219 -79645335 + MARNA DNA Mariner 394 511 -75 * 2055 134 0 3 chr6 109634794 109635107 -79644447 - AluSx SINE Alu 0 312 1 969 115 0 0 chr6 109636331 109636470 -79643084 + L1PA7 LINE L1 6014 6152 -2 23 0 0 0 chr6 109636482 109636505 -79643049 + AT_rich Low_complexity Low_complexity 1 23 0 352 293 63 31 chr6 109636589 109636780 -79642774 + HAL1 LINE L1 2245 2441 -66 227 77 0 26 chr6 109636840 109636879 -79642675 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 284 269 43 0 chr6 109636938 109637031 -79642523 + HAL1b LINE L1 1252 1348 0 202 87 43 0 chr6 109637094 109637140 -79642414 + (CAA)n Simple_repeat Simple_repeat 1 48 0 2272 157 36 7 chr6 109637474 109637888 -79641666 - MSTB LTR MaLR 0 426 1 8502 189 9 16 chr6 109738357 109741171 -79538383 + L1PB2 LINE L1 3336 6143 -8 9476 191 19 8 chr6 109741174 109744271 -79535283 + L1PB3 LINE L1 3026 6152 -2 293 224 53 0 chr6 109744282 109744358 -79535196 - HAL1 LINE L1 -917 1590 1511 827 237 108 4 chr6 109744706 109744938 -79534616 - L1ME1 LINE L1 -8 6158 5903 1549 99 92 50 chr6 109745013 109745295 -79534259 + MER4C LTR ERV1 1 294 -171 1013 133 0 0 chr6 109745308 109745459 -79534095 - AluSg/x SINE Alu -4 308 158 23 54 0 0 chr6 109746017 109746054 -79533500 + AT_rich Low_complexity Low_complexity 1 37 0 1583 268 53 7 chr6 109746078 109746529 -79533025 - L1MC4 LINE L1 -141 7901 7430 4397 146 8 10 chr6 109746543 109747254 -79532300 - MER50 LTR ERV1 -23 711 2 281 200 17 0 chr6 109747257 109747317 -79532237 - L1MC4 LINE L1 -627 7415 7355 201 132 0 0 chr6 109747491 109747529 -79532025 + (CAAAT)n Simple_repeat Simple_repeat 5 42 0 1897 153 0 7 chr6 109747652 109747939 -79531615 + AluSx SINE Alu 1 285 -27 2515 135 47 21 chr6 109748038 109748465 -79531089 + LTR35 LTR ERV1 1 507 -111 237 33 0 0 chr6 109748465 109748495 -79531059 + (TC)n Simple_repeat Simple_repeat 1 30 0 2515 135 47 21 chr6 109748495 109748610 -79530944 + LTR35 LTR ERV1 507 618 0 184 266 25 51 chr6 109748661 109748740 -79530814 - MIR3 SINE MIR -131 77 1 531 373 11 15 chr6 109748806 109749066 -79530488 - MIR SINE MIR -2 260 2 198 0 0 0 chr6 109749127 109749149 -79530405 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 307 236 45 18 chr6 109751936 109752046 -79527508 - L1ME1 LINE L1 -333 5829 5717 238 301 78 13 chr6 109752594 109752747 -79526807 - L1ME1 LINE L1 -523 5647 5485 236 251 133 20 chr6 109752853 109753048 -79526506 - L1ME1 LINE L1 -807 5339 5123 28 0 0 0 chr6 109753085 109753113 -79526441 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chr6 109753229 109753261 -79526293 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chr6 109753291 109753323 -79526231 + AT_rich Low_complexity Low_complexity 1 32 0 2141 111 3 0 chr6 109753329 109753627 -79525927 - AluSg SINE Alu -11 299 1 2797 154 15 10 chr6 109753808 109754288 -79525266 + L1MB3 LINE L1 5368 5849 -334 383 222 119 0 chr6 109754714 109754840 -79524714 - MER50 LTR ERV1 -352 382 242 390 228 165 16 chr6 109754901 109755028 -79524526 - MER50 LTR ERV1 -579 155 10 399 235 107 37 chr6 109755139 109755326 -79524228 - L1M4 LINE L1 -3285 2861 2662 2883 168 6 2 chr6 109755476 109755971 -79523583 - LOR1a LTR ERV1 0 497 1 492 298 108 45 chr6 109756936 109757289 -79522265 + L2 LINE L2 2938 3312 -1 296 313 56 42 chr6 109757371 109757515 -79522039 + LTR50 LTR ERVL 38 183 -612 213 39 0 0 chr6 109757785 109757811 -79521743 + (TTG)n Simple_repeat Simple_repeat 2 27 0 361 318 24 8 chr6 109758144 109758270 -79521284 + HsTC2 DNA Tc2 15 142 -1756 1459 232 167 22 chr6 109758288 109758827 -79520727 + HsTC2 DNA Tc2 1282 1898 0 27 73 0 0 chr6 109758852 109758907 -79520647 + AT_rich Low_complexity Low_complexity 1 55 0 25 31 0 0 chr6 109760540 109760572 -79518982 + AT_rich Low_complexity Low_complexity 1 32 0 1617 174 53 10 chr6 109760873 109761172 -79518382 - AluJo SINE Alu 0 312 1 23 33 0 0 chr6 109761245 109761275 -79518279 + AT_rich Low_complexity Low_complexity 1 30 0 308 137 14 55 chr6 109761592 109761665 -79517889 - MLT2C2 LTR ERVL 0 464 407 207 162 0 0 chr6 109761669 109761706 -79517848 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 750 242 11 33 chr6 109761707 109761889 -79517665 - MLT2B1 LTR ERVL -40 480 303 1308 184 73 0 chr6 109761894 109762139 -79517415 + MSTB LTR MaLR 164 426 0 1844 171 153 18 chr6 109762477 109762916 -79516638 + MLT1D LTR MaLR 1 498 -7 2167 126 48 25 chr6 109764216 109764572 -79514982 - THE1B LTR MaLR 0 364 1 11081 119 2 0 chr6 109764572 109766148 -79513406 - THE1B-int LTR MaLR 0 1580 1 1368 157 10 41 chr6 109766151 109766434 -79513120 - THE1B LTR MaLR -3 361 1 283 193 97 26 chr6 109768235 109768349 -79511205 + L1M4 LINE L1 3732 3853 -2293 477 254 163 16 chr6 109768569 109769002 -79510552 + L1MC5 LINE L1 7260 7693 -268 3137 233 30 37 chr6 109769010 109770045 -79509509 + L1M4 LINE L1 3839 4866 -1280 1084 191 94 55 chr6 109770117 109770447 -79509107 + MER2 DNA MER2_type 2 344 0 28 71 0 0 chr6 109770533 109770589 -79508965 + AT_rich Low_complexity Low_complexity 1 56 0 27 110 0 0 chr6 109771875 109771993 -79507561 + AT_rich Low_complexity Low_complexity 1 118 0 32 57 0 0 chr6 109772238 109772291 -79507263 + AT_rich Low_complexity Low_complexity 1 53 0 841 147 0 32 chr6 109773666 109773823 -79505731 - L1MA9 LINE L1 -37 6275 6124 5812 99 30 8 chr6 109773973 109775481 -79504073 + L1PA14 LINE L1 4621 6159 -2 2044 110 0 0 chr6 109776642 109776914 -79502640 - AluSc SINE Alu -21 288 17 1855 202 42 16 chr6 109777146 109777527 -79502027 + MSTD LTR MaLR 6 396 0 462 346 17 50 chr6 109777859 109778099 -79501455 + MIR SINE MIR 26 257 -5 265 227 0 27 chr6 109778134 109778209 -79501345 - L1MD3 LINE L1 -8 8405 8333 987 210 31 36 chr6 109778209 109778433 -79501121 - MER58A DNA MER1_type 0 224 2 5991 233 91 66 chr6 109778436 109778857 -79500697 - L1MD3 LINE L1 -172 8241 7832 483 189 38 0 chr6 109778857 109778963 -79500591 - MLT1F1 LTR MaLR -457 110 1 5991 233 91 66 chr6 109778963 109779185 -79500369 - L1MD3 LINE L1 -581 7832 7617 198 71 0 0 chr6 109779185 109779213 -79500341 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 5991 233 91 66 chr6 109779213 109779650 -79499904 - L1MD3 LINE L1 -796 7617 7192 628 170 15 107 chr6 109779650 109779783 -79499771 - MER53 DNA DNA 0 189 80 2329 91 0 0 chr6 109779783 109780079 -79499475 + AluY SINE Alu 1 296 -15 628 170 15 107 chr6 109780079 109780151 -79499403 - MER53 DNA DNA -109 80 3 5991 233 91 66 chr6 109780151 109781597 -79497957 - L1MD3 LINE L1 -1221 7192 5783 2033 147 36 28 chr6 109781597 109781958 -79497596 + THE1B LTR MaLR 1 364 0 10868 108 19 0 chr6 109781958 109783508 -79496046 + THE1B-int LTR MaLR 1 1580 0 1846 161 56 37 chr6 109783510 109783865 -79495689 + THE1B LTR MaLR 3 364 0 5991 233 91 66 chr6 109783865 109784689 -79494865 - L1MD3 LINE L1 -2630 5783 4693 1481 254 30 21 chr6 109784680 109785244 -79494310 - L1MD3 LINE L1 -3421 3143 2575 * 674 221 9 122 chr6 109785266 109785348 -79494206 + MER58B DNA MER1_type 26 116 -2304 1651 166 39 21 chr6 109785348 109785631 -79493923 + AluSx SINE Alu 6 293 -19 674 221 9 122 chr6 109785631 109785901 -79493653 + MER58B DNA MER1_type 116 341 0 876 273 88 12 chr6 109785951 109786362 -79493192 - L1MD3 LINE L1 -4202 2543 2102 * 1275 262 109 34 chr6 109786357 109786897 -79492657 - L1MD3 LINE L1 -4872 1692 1194 676 274 78 5 chr6 109786897 109787101 -79492453 - MER20 DNA MER1_type 0 219 1 1275 262 109 34 chr6 109787101 109787710 -79491844 - L1MD3 LINE L1 -5370 1194 439 241 325 69 69 chr6 109787874 109788046 -79491508 - L1MD3 LINE L1 -5623 422 251 2198 138 11 8 chr6 109788046 109788400 -79491154 - THE1A LTR MaLR 0 355 1 11582 93 6 1 chr6 109788400 109789971 -79489583 - THE1A-int LTR MaLR 0 1580 1 2285 121 11 11 chr6 109789971 109790326 -79489228 - THE1A LTR MaLR 0 355 1 241 325 69 69 chr6 109790326 109790569 -79488985 - L1MD3 LINE L1 -5791 254 5 5648 152 37 9 chr6 109791881 109793073 -79486481 - L1MA6 LINE L1 0 6300 5077 23 33 0 0 chr6 109793711 109793741 -79485813 + AT_rich Low_complexity Low_complexity 1 30 0 185 370 12 0 chr6 109794214 109794295 -79485259 - MIR3 SINE MIR -53 155 74 1217 268 66 55 chr6 109794777 109795507 -79484047 - MER49 LTR ERV1 0 923 4 21 0 0 0 chr6 109796403 109796424 -79483130 + AT_rich Low_complexity Low_complexity 1 21 0 1409 93 10 10 chr6 109796425 109796618 -79482936 + AluY SINE Alu 108 300 -11 23 0 0 0 chr6 109797047 109797070 -79482484 + AT_rich Low_complexity Low_complexity 1 23 0 2170 107 3 0 chr6 109797415 109797706 -79481848 - AluSq SINE Alu -21 292 1 275 273 10 30 chr6 109798039 109798138 -79481416 - L1MC/D LINE L1 -2515 5527 5431 318 177 48 0 chr6 109798139 109798201 -79481353 - MIR SINE MIR -36 226 162 267 300 0 12 chr6 109801104 109801184 -79478370 - L2 LINE L2 -200 3072 2994 1903 278 131 24 chr6 109801635 109802757 -79476797 + L2 LINE L2 2051 3273 -40 598 241 65 30 chr6 109803207 109803406 -79476148 + MIR SINE MIR 3 208 -54 459 276 0 32 chr6 109803993 109804116 -79475438 + L2 LINE L2 3195 3313 0 380 335 63 31 chr6 109804146 109804400 -79475154 + MIR SINE MIR 1 262 0 21 36 0 0 chr6 109805081 109805109 -79474445 + AT_rich Low_complexity Low_complexity 1 28 0 1508 197 31 0 chr6 109805216 109805510 -79474044 + AluJb SINE Alu 1 303 -9 726 256 12 0 chr6 109805679 109805851 -79473703 + MIR SINE MIR 81 254 -8 220 224 20 0 chr6 109805857 109805906 -79473648 + (CTA)n Simple_repeat Simple_repeat 2 51 0 541 241 167 12 chr6 109806427 109806589 -79472965 + Charlie8 DNA MER1_type 98 284 -2133 2411 318 82 36 chr6 109806680 109807680 -79471874 + L2 LINE L2 1457 2409 -905 456 155 29 39 chr6 109807680 109807807 -79471747 + L1PA8 LINE L1 6071 6172 0 2411 318 82 36 chr6 109807807 109808033 -79471521 + L2 LINE L2 2409 2623 -691 339 360 0 0 chr6 109808033 109808144 -79471410 - MER81 DNA DNA 0 114 4 2411 318 82 36 chr6 109808144 109808326 -79471228 + L2 LINE L2 2623 2931 -383 1862 143 59 0 chr6 109808385 109808671 -79470883 + AluSx SINE Alu 1 303 -9 12280 185 42 58 chr6 109808706 109809021 -79470533 + L1MA9 LINE L1 3407 3726 -4005 2160 243 34 31 chr6 109809021 109809536 -79470018 + MLT2B3 LTR ERVL 1 520 -34 518 62 0 12 chr6 109809536 109809616 -79469938 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 2160 243 34 31 chr6 109809616 109809652 -79469902 + MLT2B3 LTR ERVL 520 554 0 12280 185 42 58 chr6 109809652 109810363 -79469191 + L1MA9 LINE L1 3726 4447 -3284 1969 140 0 3 chr6 109810363 109810670 -79468884 + AluSx SINE Alu 1 306 -6 12280 185 42 58 chr6 109810670 109812652 -79466902 + L1MA9 LINE L1 4447 6430 -1301 533 184 0 0 chr6 109812652 109812739 -79466815 + Tigger5 DNA MER2_type 2237 2323 0 12280 185 42 58 chr6 109812739 109813996 -79465558 + L1MA9 LINE L1 6430 7706 -25 255 333 35 11 chr6 109814302 109814389 -79465165 + MIR SINE MIR 39 127 -81 2191 82 26 13 chr6 109814508 109814813 -79464741 - AluSc SINE Alu 0 309 1 2093 130 0 0 chr6 109815046 109815339 -79464215 + AluSx SINE Alu 1 293 -19 1296 219 109 13 chr6 109817463 109817781 -79461773 - MLT1G3 LTR MaLR 0 530 194 26 0 0 0 chr6 109817785 109817811 -79461743 + AT_rich Low_complexity Low_complexity 1 26 0 561 280 34 58 chr6 109817958 109818337 -79461217 + L1ME4a LINE L1 5360 5729 -2079 303 230 121 75 chr6 109818382 109818556 -79460998 + L1ME4a LINE L1 5717 5898 -223 1488 192 33 7 chr6 109818579 109818881 -79460673 - AluJo SINE Alu 0 313 5 190 351 26 13 chr6 109819037 109819114 -79460440 - L2 LINE L2 -18 3254 3177 196 358 148 12 chr6 109819549 109819711 -79459843 - L2 LINE L2 -172 3100 2917 2381 240 25 6 chr6 109819941 109820591 -79458963 + L1MC/D LINE L1 4501 5162 -984 1720 206 14 30 chr6 109820631 109820995 -79458559 - MLT1A1 LTR MaLR 0 365 8 1724 191 116 71 chr6 109821001 109821393 -79458161 + L1M2 LINE L1 5197 5622 -557 1804 131 26 26 chr6 109821393 109821732 -79457822 + AluSg SINE Alu 2 310 0 1724 191 116 71 chr6 109821732 109821895 -79457659 + L1M2 LINE L1 5622 5776 -403 394 202 32 11 chr6 109821911 109822005 -79457549 + L1MC/D LINE L1 5589 5684 -2101 380 236 74 128 chr6 109822265 109822562 -79456992 + L1MEd LINE L1 717 997 -5122 282 319 71 0 chr6 109822578 109822691 -79456863 - L2 LINE L2 -695 2619 2499 198 103 0 0 chr6 109823134 109823163 -79456391 + (CAG)n Simple_repeat Simple_repeat 1 29 0 425 272 126 29 chr6 109823317 109823626 -79455928 + L1ME LINE L1 5482 5820 -301 657 286 73 60 chr6 109823669 109823924 -79455630 + LTR33 LTR ERVL 13 278 -243 2173 69 41 3 chr6 109823924 109824215 -79455339 + AluY SINE Alu 1 302 -9 657 286 73 60 chr6 109824215 109824413 -79455141 + LTR33 LTR ERVL 278 472 -49 1903 107 181 0 chr6 109824928 109825266 -79454288 - L1PA16 LINE L1 -9 6157 5759 25 99 0 0 chr6 109826361 109826442 -79453112 + AT_rich Low_complexity Low_complexity 1 81 0 316 343 30 18 chr6 109826996 109827162 -79452392 + MIR3 SINE MIR 38 205 -3 248 304 73 59 chr6 109827780 109828000 -79451554 - MLT1I LTR MaLR -127 282 60 305 313 12 0 chr6 109828263 109828343 -79451211 + L2 LINE L2 3192 3272 0 193 29 29 29 chr6 109828748 109828783 -79450771 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 239 374 103 15 chr6 109828891 109829086 -79450468 - L2 LINE L2 -182 3090 2879 1975 220 62 24 chr6 109829109 109829765 -79449789 - Tigger7 DNA MER2_type -27 2560 1 1165 82 154 67 chr6 109830781 109830989 -79448565 - AluY SINE Alu -2 309 84 306 0 0 0 chr6 109831133 109831167 -79448387 + (TG)n Simple_repeat Simple_repeat 1 34 0 533 242 46 33 chr6 109832185 109832338 -79447216 - MER5A DNA MER1_type -21 168 14 714 186 0 0 chr6 109832549 109832673 -79446881 + FLAM_C SINE Alu 3 126 -7 1819 134 72 28 chr6 109833233 109833592 -79445962 + THE1C LTR MaLR 1 375 0 449 263 6 44 chr6 109834166 109834326 -79445228 + MIR SINE MIR 108 261 -1 364 344 23 0 chr6 109834427 109834555 -79444999 + MER5A DNA MER1_type 56 186 -3 182 380 70 32 chr6 109834622 109834647 -79444907 + MIR SINE MIR 89 112 -150 341 155 24 71 chr6 109834647 109834731 -79444823 + MADE1 DNA Mariner 1 80 0 182 380 70 32 chr6 109834731 109834863 -79444691 + MIR SINE MIR 112 252 -10 197 350 33 58 chr6 109835895 109836015 -79443539 - L2 LINE L2 -328 2985 2869 186 330 48 19 chr6 109836180 109836283 -79443271 - L2 LINE L2 0 3313 3208 224 245 157 49 chr6 109836504 109836606 -79442948 - L2 LINE L2 -5 3267 3155 493 275 63 21 chr6 109837024 109837213 -79442341 - MIR SINE MIR -65 197 1 384 304 68 19 chr6 109837384 109837545 -79442009 - MIR3 SINE MIR -9 199 31 307 241 0 74 chr6 109840420 109840528 -79439026 - MER5B DNA MER1_type -4 174 75 2500 66 0 3 chr6 109841026 109841327 -79438227 - AluSx SINE Alu -12 300 1 329 301 52 7 chr6 109841722 109841858 -79437696 - LTR67 LTR ERVL -6 551 410 333 308 92 0 chr6 109842613 109842853 -79436701 + L1 LINE L1 2915 3176 -2970 242 168 137 53 chr6 109842898 109842993 -79436561 + L1 LINE L1 3847 3949 -2197 1249 210 40 40 chr6 109842993 109843293 -79436261 - AluJo SINE Alu -2 300 1 3191 216 40 15 chr6 109843339 109843882 -79435672 + L1ME2 LINE L1 5339 5910 -254 216 0 0 0 chr6 109843882 109843906 -79435648 + (TG)n Simple_repeat Simple_repeat 2 25 0 3191 216 40 15 chr6 109843906 109844158 -79435396 + L1ME2 LINE L1 5910 6154 -10 346 238 84 14 chr6 109844155 109844298 -79435256 + L1MC4a LINE L1 6343 6495 -1313 * 1413 241 17 12 chr6 109844298 109844642 -79434912 + L1MC4 LINE L1 6685 7030 -1012 4528 176 34 7 chr6 109844672 109844958 -79434596 + L1PA16 LINE L1 5056 5333 -833 1451 69 0 30 chr6 109844958 109845160 -79434394 + AluY SINE Alu 114 309 -2 4528 176 34 7 chr6 109845160 109845933 -79433621 + L1PA16 LINE L1 5333 6142 -24 21 0 0 0 chr6 109845933 109845954 -79433600 + AT_rich Low_complexity Low_complexity 1 21 0 286 206 7 78 chr6 109846201 109846342 -79433212 + L1MC4 LINE L1 7033 7163 -879 1533 226 54 23 chr6 109846350 109846793 -79432761 + L1MC4 LINE L1 7218 7674 -368 864 225 41 26 chr6 109846809 109847076 -79432478 + L1MC4 LINE L1 7768 8038 -4 2214 90 0 42 chr6 109847076 109847386 -79432168 + AluSg SINE Alu 1 297 -13 399 204 301 0 chr6 109848411 109848524 -79431030 + MIR SINE MIR 104 250 -12 22 35 0 0 chr6 109848530 109848559 -79430995 + AT_rich Low_complexity Low_complexity 1 29 0 1913 152 149 11 chr6 109848893 109849269 -79430285 + MSTA LTR MaLR 1 428 0 557 300 60 24 chr6 109849788 109850158 -79429396 + HAL1 LINE L1 1141 1523 -984 1039 131 0 0 chr6 109850366 109850511 -79429043 + LTR8 LTR ERV1 547 691 0 10772 119 76 12 chr6 109850512 109851663 -79427891 + HUERS-P1 LTR ERV1 2 1078 -5185 477 34 0 0 chr6 109851663 109851722 -79427832 + (TC)n Simple_repeat Simple_repeat 2 60 0 312 27 0 0 chr6 109851721 109851758 -79427796 + (TG)n Simple_repeat Simple_repeat 2 38 0 * 10772 119 76 12 chr6 109851722 109852307 -79427247 + HUERS-P1 LTR ERV1 1078 1811 -4452 * 18171 117 33 44 chr6 109852295 109852905 -79426649 + HUERS-P1 LTR ERV1 1456 2071 -3875 2579 99 11 11 chr6 109852905 109853269 -79426285 - THE1B LTR MaLR 0 364 1 18171 117 33 44 chr6 109853269 109856258 -79423296 + HUERS-P1 LTR ERV1 2071 4771 -1175 1471 154 0 24 chr6 109856258 109856504 -79423050 + LTR8 LTR ERV1 340 579 -112 213 39 0 0 chr6 109856504 109856530 -79423024 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 306 0 0 0 chr6 109856529 109856563 -79422991 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1913 148 123 50 chr6 109857982 109858381 -79421173 - MSTA LTR MaLR 0 428 1 240 220 40 0 chr6 109858721 109858771 -79420783 + polypyrimidine Low_complexity Low_complexity 4 55 0 1234 259 163 53 chr6 109858892 109859420 -79420134 - MLT1E LTR MaLR 0 593 8 246 208 21 0 chr6 109861446 109861494 -79418060 + GA-rich Low_complexity Low_complexity 3 51 0 737 288 126 33 chr6 109861584 109861949 -79417605 + MLT1J LTR MaLR 36 434 -77 5459 174 47 35 chr6 109861952 109863244 -79416310 + L1PA16 LINE L1 4125 5419 -747 1672 117 3 91 chr6 109863244 109863553 -79416001 + AluSq SINE Alu 22 303 -10 5459 174 47 35 chr6 109863553 109864302 -79415252 + L1PA16 LINE L1 5419 6157 -9 232 230 23 46 chr6 109864311 109864398 -79415156 + MLT1J LTR MaLR 427 511 0 789 173 29 0 chr6 109864525 109864664 -79414890 - MER5A DNA MER1_type -13 176 34 528 278 13 7 chr6 109864992 109865143 -79414411 + MER5A DNA MER1_type 38 189 0 26 0 0 0 chr6 109865278 109865304 -79414250 + AT_rich Low_complexity Low_complexity 1 26 0 344 328 120 59 chr6 109865618 109866340 -79413214 + L2 LINE L2 2515 3271 -1 519 277 121 0 chr6 109866531 109866672 -79412882 - MIR SINE MIR -92 170 13 4166 145 48 14 chr6 109868851 109869644 -79409910 - L1MA4 LINE L1 -5 6295 5476 6470 148 13 22 chr6 109869649 109870187 -79409367 - L1MA3 LINE L1 -2 6303 5761 2368 148 3 3 chr6 109870187 109870551 -79409003 - THE1B LTR MaLR 0 364 1 10583 111 40 0 chr6 109870551 109872071 -79407483 - THE1B-int LTR MaLR 0 1580 1 2271 132 25 3 chr6 109872071 109872427 -79407127 - THE1B LTR MaLR 0 364 1 6470 148 13 22 chr6 109872427 109873830 -79405724 - L1MA3 LINE L1 -542 5763 4381 2151 118 6 13 chr6 109873830 109874145 -79405409 - AluSq SINE Alu 0 313 1 6470 148 13 22 chr6 109874145 109874213 -79405341 - L1MA3 LINE L1 -1924 4381 4314 6191 176 35 12 chr6 109874212 109874565 -79404989 - L1PB2 LINE L1 -1 6150 5807 * 306 0 0 0 chr6 109874565 109874599 -79404955 + (TG)n Simple_repeat Simple_repeat 2 35 0 6191 176 35 12 chr6 109874599 109875985 -79403569 - L1PB2 LINE L1 -344 5807 4359 6227 93 8 0 chr6 109875985 109877126 -79402428 - L1PA10 LINE L1 -1 6167 5021 6191 176 35 12 chr6 109877126 109877706 -79401848 - L1PB2 LINE L1 -1792 4359 3794 259 299 161 46 chr6 109928337 109928511 -79351043 - L2 LINE L2 -1 3312 3119 533 301 68 0 chr6 109928601 109928777 -79350777 - L2 LINE L2 -961 2353 2166 255 224 233 43 chr6 109929812 109929928 -79349626 + MIR SINE MIR 75 212 -50 517 282 110 49 chr6 109931104 109931157 -79348397 + L2 LINE L2 2837 2885 -428 225 0 0 0 chr6 109931157 109931182 -79348372 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 517 282 110 49 chr6 109931182 109931454 -79348100 + L2 LINE L2 2885 3182 -131 22 56 0 0 chr6 109932117 109932153 -79347401 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr6 109932912 109932935 -79346619 + AT_rich Low_complexity Low_complexity 1 23 0 2726 168 42 18 chr6 109933326 109934325 -79345229 + Tigger6a DNA MER2_type 1 1074 -9 22 35 0 0 chr6 109934522 109934551 -79345003 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr6 109935796 109935832 -79343722 + AT_rich Low_complexity Low_complexity 1 36 0 6324 184 44 8 chr6 109936041 109938188 -79341366 + L1PB4 LINE L1 3942 6153 -3 22 0 0 0 chr6 109938336 109938358 -79341196 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr6 109939129 109939156 -79340398 + AT_rich Low_complexity Low_complexity 1 27 0 255 195 0 35 chr6 109940515 109940602 -79338952 + CT-rich Low_complexity Low_complexity 3 86 0 48 77 0 0 chr6 109944787 109944891 -79334663 + AT_rich Low_complexity Low_complexity 1 104 0 2171 142 28 17 chr6 109946113 109946472 -79333082 - THE1B LTR MaLR 0 364 2 10912 79 48 4 chr6 109946473 109947987 -79331567 - THE1B-int LTR MaLR 0 1580 1 2304 137 29 0 chr6 109947989 109948331 -79331223 - THE1B LTR MaLR -12 352 1 266 143 41 0 chr6 109949447 109949496 -79330058 + L1ME LINE L1 5563 5613 -508 3054 83 0 0 chr6 109950109 109950518 -79329036 + L1PA7 LINE L1 5746 6154 0 1469 210 74 25 chr6 109950579 109951030 -79328524 + MER39 LTR ERV1 4 700 -7 27 49 0 0 chr6 109951266 109951307 -79328247 + AT_rich Low_complexity Low_complexity 1 41 0 180 338 0 44 chr6 109952171 109952239 -79327315 + MIR SINE MIR 124 188 -74 216 182 0 0 chr6 109955099 109955143 -79324411 + GA-rich Low_complexity Low_complexity 2 45 0 673 150 39 8 chr6 109955192 109955319 -79324235 + FLAM_C SINE Alu 1 131 -2 14248 198 39 16 chr6 109956106 109963227 -79316327 - L1MA5 LINE L1 -23 7298 2 219 163 0 20 chr6 109963312 109963361 -79316193 + (TTCA)n Simple_repeat Simple_repeat 4 51 0 2312 68 41 0 chr6 109963745 109964038 -79315516 - AluY SINE Alu -6 305 1 282 230 184 17 chr6 109964212 109964386 -79315168 - L1ME4a LINE L1 -121 6000 5798 1142 196 171 4 chr6 109964532 109964807 -79314747 - MER58B DNA MER1_type -1 340 20 267 333 12 0 chr6 109966930 109967014 -79312540 - L2 LINE L2 -19 3294 3210 207 0 0 0 chr6 109967326 109967349 -79312205 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 293 180 18 18 chr6 109967593 109967704 -79311850 + (CA)n Simple_repeat Simple_repeat 2 112 0 360 283 9 53 chr6 109968174 109968287 -79311267 + MIR3 SINE MIR 98 205 -3 2045 143 0 0 chr6 109968779 109969087 -79310467 + AluSx SINE Alu 3 310 -2 255 269 128 0 chr6 109969210 109969288 -79310266 + MIR3 SINE MIR 111 198 -10 23 68 0 0 chr6 109969558 109969602 -79309952 + AT_rich Low_complexity Low_complexity 1 44 0 192 356 38 68 chr6 109973221 109973353 -79306201 - MIR SINE MIR -63 145 18 259 341 79 81 chr6 109974238 109974645 -79304909 - L2 LINE L2 -1 3271 2866 444 19 0 0 chr6 109974653 109974706 -79304848 + (TG)n Simple_repeat Simple_repeat 2 54 0 8453 112 20 2 chr6 109976510 109977785 -79301769 + HSMAR2 DNA Mariner 2 1300 -2 733 294 86 56 chr6 109978011 109978425 -79301129 - L1ME3 LINE L1 -216 6015 5582 2099 106 34 0 chr6 109978425 109978718 -79300836 - AluSx SINE Alu -9 303 1 733 294 86 56 chr6 109978718 109978806 -79300748 - L1ME3 LINE L1 -649 5582 5498 343 307 57 33 chr6 109978963 109979207 -79300347 - L1ME3 LINE L1 -852 5363 5114 427 276 81 9 chr6 109979240 109979450 -79300104 - L1ME3 LINE L1 -1163 5052 4828 245 253 38 0 chr6 109979564 109979643 -79299911 - L1ME3 LINE L1 -1785 4430 4349 3574 286 83 15 chr6 109979646 109981578 -79297976 - L1M LINE L1 -743 5403 3356 357 274 99 69 chr6 109981670 109981940 -79297614 - L1ME3 LINE L1 -862 1714 1409 7615 92 5 14 chr6 109981940 109983021 -79296533 - MER11C LTR ERVK 0 1071 1 357 274 99 69 chr6 109983021 109983221 -79296333 - L1ME3 LINE L1 -1167 1409 1216 370 290 129 48 chr6 109983234 109983592 -79295962 - L1ME3 LINE L1 -5065 1174 791 468 51 0 0 chr6 109984445 109984504 -79295050 + (TA)n Simple_repeat Simple_repeat 2 60 0 571 298 81 40 chr6 109985333 109986294 -79293260 - L1MEd LINE L1 -4657 1653 603 303 272 0 0 chr6 109986438 109986519 -79293035 - L1MEd LINE L1 -5937 182 102 22 56 0 0 chr6 109987403 109987439 -79292115 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr6 109987494 109987531 -79292023 + AT_rich Low_complexity Low_complexity 1 37 0 279 348 37 22 chr6 109988105 109988240 -79291314 + MIR SINE MIR 96 232 -30 402 253 152 38 chr6 109988768 109988926 -79290628 - MER5B DNA MER1_type -2 176 1 192 356 130 26 chr6 109989005 109989120 -79290434 + L2 LINE L2 3146 3272 0 2160 118 3 0 chr6 109989409 109989706 -79289848 - AluSp SINE Alu -9 304 7 303 181 0 0 chr6 109990662 109990734 -79288820 + CT-rich Low_complexity Low_complexity 4 75 0 2161 116 0 3 chr6 109991271 109991574 -79287980 + AluSc SINE Alu 1 302 -7 1382 25 0 0 chr6 109992652 109992809 -79286745 - AluY SINE Alu 0 311 155 247 293 0 0 chr6 109994202 109994260 -79285294 - MIR SINE MIR -128 134 77 377 231 8 0 chr6 109994460 109994581 -79284973 + CT-rich Low_complexity Low_complexity 2 123 0 2247 128 0 0 chr6 109996557 109996869 -79282685 - AluSx SINE Alu 0 312 1 249 108 0 0 chr6 109997610 109997647 -79281907 + (CA)n Simple_repeat Simple_repeat 2 38 0 1886 149 7 30 chr6 109997918 109998214 -79281340 + AluJo SINE Alu 1 289 -23 449 305 109 17 chr6 109999972 110000211 -79279343 + MIR SINE MIR 2 262 0 22 0 0 0 chr6 110002898 110002920 -79276634 + AT_rich Low_complexity Low_complexity 1 22 0 1441 98 49 26 chr6 110003193 110003458 -79276096 + L1MA8 LINE L1 6013 6283 -8 238 259 147 49 chr6 110003661 110003804 -79275750 + MIR3 SINE MIR 30 186 -22 878 274 12 32 chr6 110003912 110004164 -79275390 + MIR SINE MIR 16 262 0 201 333 54 32 chr6 110005421 110005514 -79274040 - MIR SINE MIR -167 95 1 194 329 101 0 chr6 110005720 110005799 -79273755 + L2 LINE L2 3227 3313 0 258 326 47 12 chr6 110008413 110008499 -79271055 + L3 LINE CR1 1365 1453 -124 2538 49 0 0 chr6 110009369 110009675 -79269879 + AluY SINE Alu 1 306 -5 29 0 0 0 chr6 110011635 110011664 -79267890 + AT_rich Low_complexity Low_complexity 1 29 0 476 358 118 19 chr6 110011773 110012296 -79267258 + L2 LINE L2 1841 2415 -899 3438 185 43 17 chr6 110012345 110013103 -79266451 + L1MB7 LINE L1 5405 6182 -2 367 354 32 0 chr6 110013197 110013355 -79266199 + L2 LINE L2 2897 3059 -213 473 297 118 14 chr6 110013453 110013665 -79265889 + MIR SINE MIR 15 248 -14 265 313 0 12 chr6 110013727 110013807 -79265747 + L2 LINE L2 3230 3308 -5 265 283 20 30 chr6 110015145 110015244 -79264310 - MIR SINE MIR -75 187 90 420 290 23 23 chr6 110015681 110015812 -79263742 + L2 LINE L2 3182 3312 -1 455 289 113 25 chr6 110016322 110016481 -79263073 - MIR SINE MIR -74 188 16 1818 153 7 0 chr6 110016635 110016922 -79262632 - AluJb SINE Alu -19 293 5 211 230 350 20 chr6 110017518 110017618 -79261936 + MER5B DNA MER1_type 4 136 -42 * 219 342 13 13 chr6 110017611 110017690 -79261864 + MIR3 SINE MIR 121 199 -9 257 209 70 58 chr6 110017813 110017899 -79261655 - MIR SINE MIR -136 126 40 609 198 61 42 chr6 110018645 110018857 -79260697 - L1MC5 LINE L1 -36 7925 7710 2184 105 10 7 chr6 110020275 110020581 -79258973 - AluSg SINE Alu -3 307 1 1432 134 63 0 chr6 110020822 110021106 -79258448 - L1MA8 LINE L1 -2 6289 5988 811 263 64 17 chr6 110021308 110021544 -79258010 + MIR SINE MIR 8 254 -8 655 135 0 0 chr6 110021923 110022034 -79257520 - L1MA2 LINE L1 0 6304 6194 4317 188 45 27 chr6 110022472 110023550 -79256004 - L1MD1 LINE L1 -5 6631 5528 2043 189 47 95 chr6 110023545 110024102 -79255452 - L1MD1 LINE L1 -5986 554 25 * 1401 228 103 16 chr6 110024101 110024539 -79255015 - L1MC4a LINE L1 -1915 5893 5418 * 201 175 0 0 chr6 110024558 110024598 -79254956 + (TA)n Simple_repeat Simple_repeat 2 41 0 231 214 0 0 chr6 110024602 110024658 -79254896 - L1MC4 LINE L1 -1339 6703 6648 520 210 31 37 chr6 110024786 110024948 -79254606 - L1ME1 LINE L1 -14 6152 5992 27 0 0 0 chr6 110026653 110026680 -79252874 + AT_rich Low_complexity Low_complexity 1 27 0 263 256 33 11 chr6 110026997 110027087 -79252467 - MARNA DNA Mariner -241 345 254 1823 274 80 23 chr6 110027106 110027955 -79251599 + L1MC4 LINE L1 6897 7713 -95 33797 75 32 1 chr6 110027984 110032449 -79247105 + L1PA4 LINE L1 3 4605 -1541 7394 31 3 12 chr6 110032449 110033697 -79245857 + L1PA4 LINE L1 4962 6183 0 258 222 49 49 chr6 110033710 110033854 -79245700 + L1MC4 LINE L1 7896 8039 -3 231 114 0 0 chr6 110034383 110034418 -79245136 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 2332 146 35 11 chr6 110034684 110035135 -79244419 - L1MA4 LINE L1 -4 6296 5835 523 335 11 150 chr6 110036730 110036990 -79242564 - L1PA16 LINE L1 -2 6164 5941 453 239 18 0 chr6 110036988 110037097 -79242457 + L1P LINE L1 3999 4109 -2037 * 450 280 132 6 chr6 110037105 110037287 -79242267 - MIR SINE MIR -56 206 2 258 239 15 0 chr6 110037650 110037717 -79241837 + MER116 DNA Mariner 1 68 -12 259 285 46 54 chr6 110037734 110037864 -79241690 - HAL1 LINE L1 -57 2450 2322 242 288 12 0 chr6 110039360 110039440 -79240114 - HAL1 LINE L1 -612 1895 1815 900 126 0 0 chr6 110039520 110039655 -79239899 - U4 snRNA snRNA -10 135 1 332 247 0 12 chr6 110039656 110039741 -79239813 - HAL1 LINE L1 -757 1750 1667 231 203 36 7 chr6 110039783 110039812 -79239742 + (TAGA)n Simple_repeat Simple_repeat 1 28 -77 210 118 0 0 chr6 110039812 110039846 -79239708 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 231 203 36 7 chr6 110039846 110039855 -79239699 + (TAGA)n Simple_repeat Simple_repeat 28 105 0 218 32 32 0 chr6 110039855 110039886 -79239668 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 1638 146 16 0 chr6 110040053 110040307 -79239247 - AluSx SINE Alu -54 258 1 619 320 106 53 chr6 110040307 110040816 -79238738 - HAL1 LINE L1 -1337 1170 635 824 281 115 16 chr6 110041385 110041751 -79237803 - LTR33 LTR ERVL -20 501 100 23 0 0 0 chr6 110041906 110041929 -79237625 + AT_rich Low_complexity Low_complexity 1 23 0 294 374 88 13 chr6 110042121 110042359 -79237195 + L2 LINE L2 2832 3087 -185 409 185 65 0 chr6 110042467 110042575 -79236979 - MER20B DNA MER1_type 0 783 669 22 35 0 0 chr6 110043890 110043919 -79235635 + AT_rich Low_complexity Low_complexity 1 29 0 260 212 230 24 chr6 110043934 110044099 -79235455 - MER20B DNA MER1_type -125 658 460 1017 243 114 9 chr6 110044269 110044610 -79234944 + HsTC2 DNA Tc2 35 411 -1487 1433 285 11 13 chr6 110044976 110045502 -79234052 + L1PA12 LINE L1 2182 2706 -4875 766 183 233 11 chr6 110045506 110045686 -79233868 - AluJb SINE Alu -6 306 87 4464 229 16 5 chr6 110045689 110047296 -79232258 + L1PA12 LINE L1 2702 4325 -3259 7237 206 14 16 chr6 110047437 110048443 -79231111 + L1 LINE L1 4809 5814 -1770 2383 55 0 7 chr6 110048443 110048736 -79230818 - AluY SINE Alu -20 291 1 7237 206 14 16 chr6 110048736 110049525 -79230029 + L1 LINE L1 5814 6602 -982 4035 144 71 10 chr6 110049708 110050628 -79228926 + L1PA16 LINE L1 5142 6157 -9 2433 124 39 5 chr6 110050643 110051078 -79228476 - L1MB3 LINE L1 -33 6150 5701 856 171 89 162 chr6 110051078 110051528 -79228026 - LOR1a LTR ERV1 0 497 81 424 291 60 0 chr6 110053658 110053792 -79225762 + LTR50 LTR ERVL 18 159 -636 2423 302 31 10 chr6 110054314 110055145 -79224409 + HERVL LTR ERVL 3764 4612 -1042 583 282 6 0 chr6 110055304 110055467 -79224087 + HERVL LTR ERVL 4910 5073 -691 685 261 0 0 chr6 110055468 110055633 -79223921 + MER77 LTR ERV1 441 605 0 243 169 91 0 chr6 110055800 110055877 -79223677 - L1M4 LINE L1 -2157 3989 3906 476 314 65 46 chr6 110056089 110056350 -79223204 - MLT1H LTR MaLR -247 302 37 1838 202 138 15 chr6 110056609 110057927 -79221627 + L1MCa LINE L1 1314 2885 -3541 32 26 0 0 chr6 110059219 110059258 -79220296 + AT_rich Low_complexity Low_complexity 1 39 0 2546 116 6 0 chr6 110059677 110060039 -79219515 + THE1B LTR MaLR 1 364 0 1509 195 99 9 chr6 110060319 110060653 -79218901 - MLT1A1 LTR MaLR 0 365 2 327 364 0 0 chr6 110060959 110061069 -79218485 - L2 LINE L2 -6 3307 3198 183 253 127 76 chr6 110061088 110061167 -79218387 - L2 LINE L2 -221 3051 2969 396 205 36 12 chr6 110061250 110061333 -79218221 - L2 LINE L2 0 3313 3229 461 270 119 13 chr6 110062511 110062670 -79216884 - MIR SINE MIR -3 259 84 1991 111 51 87 chr6 110064345 110064734 -79214820 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr6 110064778 110064801 -79214753 + AT_rich Low_complexity Low_complexity 1 23 0 661 216 10 108 chr6 110064827 110065031 -79214523 - MIR SINE MIR -71 191 8 355 341 119 0 chr6 110065034 110065170 -79214384 - MIR SINE MIR -55 153 1 1867 153 0 3 chr6 110065386 110065668 -79213886 - AluSx SINE Alu -2 310 30 925 289 162 18 chr6 110065784 110066345 -79213209 - HAL1 LINE L1 -1783 724 83 182 80 0 0 chr6 110066681 110066706 -79212848 + L2 LINE L2 2715 2739 -575 334 368 67 40 chr6 110066893 110067222 -79212332 + L2 LINE L2 2857 3194 -78 21 0 0 0 chr6 110067336 110067357 -79212197 + AT_rich Low_complexity Low_complexity 1 21 0 324 257 160 28 chr6 110067926 110068070 -79211484 - MIR SINE MIR -13 249 87 655 138 19 4 chr6 110069508 110069627 -79209927 + MLT2D LTR ERVL 84 191 -223 285 300 72 61 chr6 110069798 110069978 -79209576 - MER5A DNA MER1_type -1 188 7 2035 131 79 18 chr6 110071186 110071529 -79208025 + THE1B LTR MaLR 1 364 0 9145 100 4 28 chr6 110071529 110071917 -79207637 + MSTA-int LTR MaLR 1 397 -1183 2237 97 3 3 chr6 110071917 110072215 -79207339 - AluSx SINE Alu -14 298 1 9145 100 4 28 chr6 110072215 110073204 -79206350 + MSTA-int LTR MaLR 397 1345 -235 18973 177 24 27 chr6 110073305 110075958 -79203596 + L1M1 LINE L1 24 2683 -4882 2515 123 54 5 chr6 110075958 110076366 -79203188 + MSTA LTR MaLR 1 428 0 18973 177 24 27 chr6 110076366 110079102 -79200452 + L1M1 LINE L1 2683 5407 -2158 9068 167 143 8 chr6 110079125 110081259 -79198295 + L1MA3 LINE L1 709 3131 -4435 3650 112 14 2 chr6 110081260 110081814 -79197740 + L1PB1 LINE L1 5590 6150 -1 6756 138 32 9 chr6 110081825 110084114 -79195440 + L1MA3 LINE L1 5395 7724 0 1617 186 29 23 chr6 110084905 110085211 -79194343 - AluJo SINE Alu -4 308 1 1266 244 26 51 chr6 110085915 110086345 -79193209 - MLT1D LTR MaLR -86 419 1 275 282 68 29 chr6 110086385 110086488 -79193066 - MIR SINE MIR 0 262 156 2244 181 58 36 chr6 110086677 110087145 -79192409 + MLT2B1 LTR ERVL 1 482 -38 186 71 0 0 chr6 110087145 110087173 -79192381 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 2244 181 58 36 chr6 110087173 110087208 -79192346 + MLT2B1 LTR ERVL 482 515 -5 12420 189 45 15 chr6 110087208 110090633 -79188921 + ERVL LTR ERVL 1 3575 -2189 1885 155 43 43 chr6 110090888 110091221 -79188333 + THE1C LTR MaLR 1 336 -39 2039 88 92 3 chr6 110091221 110091504 -79188050 - AluSc SINE Alu -1 308 1 1885 155 43 43 chr6 110091504 110091545 -79188009 + THE1C LTR MaLR 335 375 0 360 229 64 18 chr6 110092512 110092621 -79186933 - L1ME4a LINE L1 -49 6072 5959 314 257 29 0 chr6 110092911 110092981 -79186573 + L2 LINE L2 3201 3272 0 981 164 0 61 chr6 110092989 110093203 -79186351 + MLT1B LTR MaLR 2 202 -188 709 193 28 7 chr6 110093197 110093342 -79186212 + MLT2D LTR ERVL 219 366 -48 * 288 53 0 0 chr6 110093345 110093383 -79186171 + (TC)n Simple_repeat Simple_repeat 1 38 0 201 74 0 0 chr6 110093383 110093410 -79186144 + (TG)n Simple_repeat Simple_repeat 2 28 0 432 0 0 0 chr6 110093591 110093639 -79185915 + (TA)n Simple_repeat Simple_repeat 1 48 0 * 495 33 0 0 chr6 110093638 110093699 -79185855 + (GA)n Simple_repeat Simple_repeat 2 62 0 2021 104 0 4 chr6 110093716 110093985 -79185569 - AluSx SINE Alu -44 268 1 765 216 193 19 chr6 110094812 110095071 -79184483 - MER2 DNA MER2_type 0 345 42 252 269 0 0 chr6 110095116 110095168 -79184386 + MIR SINE MIR 93 144 -64 25 0 0 0 chr6 110095779 110095804 -79183750 + AT_rich Low_complexity Low_complexity 1 25 0 267 359 117 10 chr6 110096066 110096109 -79183445 + L2 LINE L2 2841 2878 -435 192 40 0 0 chr6 110096109 110096134 -79183420 + (CA)n Simple_repeat Simple_repeat 2 26 0 267 359 117 10 chr6 110096134 110096240 -79183314 + L2 LINE L2 2878 2971 -342 1924 154 8 50 chr6 110096240 110096603 -79182951 + MER7A DNA MER2_type 1 346 0 267 359 117 10 chr6 110096603 110096658 -79182896 + L2 LINE L2 2971 3068 -245 408 55 0 0 chr6 110096690 110096745 -79182809 + (TG)n Simple_repeat Simple_repeat 2 56 0 641 298 28 36 chr6 110098488 110098736 -79180818 + MIR SINE MIR 13 258 -4 25 83 0 0 chr6 110099024 110099084 -79180470 + AT_rich Low_complexity Low_complexity 1 60 0 371 308 68 4 chr6 110099210 110099444 -79180110 - L1ME4a LINE L1 -256 5865 5617 322 301 139 17 chr6 110099480 110099653 -79179901 - L1ME4a LINE L1 -637 5484 5291 189 0 0 0 chr6 110101070 110101091 -79178463 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 26 64 0 0 chr6 110101443 110101490 -79178064 + AT_rich Low_complexity Low_complexity 1 47 0 343 217 14 0 chr6 110101507 110101576 -79177978 + MIR SINE MIR 173 242 -20 335 363 0 0 chr6 110102141 110102232 -79177322 + L2 LINE L2 3146 3236 -36 22 0 0 0 chr6 110102349 110102371 -79177183 + AT_rich Low_complexity Low_complexity 1 22 0 267 93 0 0 chr6 110102580 110102623 -79176931 + (TC)n Simple_repeat Simple_repeat 2 44 0 251 234 28 83 chr6 110102627 110102772 -79176782 - L1MCc LINE L1 -5113 1310 1174 263 301 18 35 chr6 110102993 110103106 -79176448 + MLT1I LTR MaLR 114 224 -185 1435 172 44 99 chr6 110103110 110103329 -79176225 - MLT1B LTR MaLR 0 390 203 4921 128 68 9 chr6 110103329 110104182 -79175372 + MER4D LTR ERV1 1 903 0 1435 172 44 99 chr6 110104182 110104375 -79175179 - MLT1B LTR MaLR -187 203 1 469 241 0 68 chr6 110104391 110104553 -79175001 + MLT1I LTR MaLR 241 391 -18 1113 222 38 43 chr6 110104618 110105032 -79174522 + MLT1C LTR MaLR 1 467 0 23 0 0 0 chr6 110105531 110105554 -79174000 + AT_rich Low_complexity Low_complexity 1 23 0 540 269 138 20 chr6 110106265 110106764 -79172790 - HAL1b LINE L1 -7 1341 784 885 272 153 40 chr6 110106815 110107359 -79172195 + MLT1L LTR MaLR 1 605 -10 265 268 6 89 chr6 110107591 110107759 -79171795 - L2 LINE L2 -123 3190 3037 268 232 111 0 chr6 110109423 110109522 -79170032 + MLT1G LTR MaLR 10 119 -471 681 69 0 40 chr6 110109527 110109628 -79169926 - MLT2A2 LTR ERVL -10 443 347 1108 120 0 0 chr6 110109630 110109809 -79169745 + AluSg/x SINE Alu 132 310 0 1749 122 95 51 chr6 110109815 110110264 -79169290 - MLT2A2 LTR ERVL -93 461 1 546 245 59 63 chr6 110110275 110110624 -79168930 + MLT1G LTR MaLR 123 590 0 324 0 0 0 chr6 110110786 110110822 -79168732 + (TTG)n Simple_repeat Simple_repeat 2 37 0 556 270 152 17 chr6 110112049 110112345 -79167209 - MLT1J2 LTR MaLR -30 420 85 542 185 34 8 chr6 110112463 110112582 -79166972 + MLT1D LTR MaLR 1 122 -383 407 308 56 0 chr6 110113686 110113793 -79165761 - L2 LINE L2 0 3272 3160 1726 181 3 3 chr6 110114594 110114882 -79164672 + AluJo SINE Alu 1 288 -24 293 145 16 0 chr6 110114882 110114944 -79164610 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 1672 166 163 38 chr6 110115183 110115630 -79163924 + MLT1D LTR MaLR 1 503 -2 219 373 78 10 chr6 110116084 110116186 -79163368 + L2 LINE L2 3154 3262 -10 6972 56 10 2 chr6 110116224 110117578 -79161976 + L1PA7 LINE L1 4799 6154 0 282 160 0 0 chr6 110118998 110119048 -79160506 + (CA)n Simple_repeat Simple_repeat 2 51 0 213 211 0 0 chr6 110119119 110119171 -79160383 + (TG)n Simple_repeat Simple_repeat 1 52 0 195 129 0 0 chr6 110121288 110121319 -79158235 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 517 186 11 147 chr6 110121599 110121687 -79157867 - MER45A DNA AcHobo -1403 178 124 1935 69 0 16 chr6 110121687 110121933 -79157621 + AluY SINE Alu 1 242 -69 517 186 11 147 chr6 110121933 110122021 -79157533 - MER45A DNA AcHobo -1457 124 26 1199 83 0 0 chr6 110122261 110122417 -79157137 - AluY SINE Alu -8 303 148 3270 143 22 2 chr6 110122505 110123015 -79156539 + MLT2B1 LTR ERVL 1 520 0 207 283 33 0 chr6 110125026 110125086 -79154468 + MIR3 SINE MIR 96 157 -51 1927 181 13 20 chr6 110125184 110125554 -79154000 - MER67C LTR ERV1 -314 396 28 2155 112 0 10 chr6 110125554 110125858 -79153696 - AluSx SINE Alu -11 301 1 1927 181 13 20 chr6 110125858 110125884 -79153670 - MER67C LTR ERV1 -682 28 3 610 198 13 106 chr6 110126662 110126889 -79152665 - MER67C LTR ERV1 -18 692 487 554 250 128 0 chr6 110126899 110127071 -79152483 - MER67C LTR ERV1 -353 357 164 301 401 67 45 chr6 110127464 110127731 -79151823 - L2 LINE L2 -8 3264 2992 1931 166 0 0 chr6 110127792 110128087 -79151467 + AluJo SINE Alu 1 295 -17 1845 169 19 3 chr6 110128694 110129001 -79150553 - AluSx SINE Alu 0 312 1 1510 176 4 4 chr6 110129052 110129302 -79150252 + AluJo SINE Alu 24 273 -39 23 0 0 0 chr6 110129424 110129447 -79150107 + AT_rich Low_complexity Low_complexity 1 23 0 411 265 31 12 chr6 110129989 110130151 -79149403 - L1ME4a LINE L1 -2 6119 5955 238 325 104 13 chr6 110130251 110130559 -79148995 - L1ME4a LINE L1 -304 5817 5482 289 293 22 1 chr6 110130619 110130740 -79148814 + L1MA10 LINE L1 6017 6293 -24 1745 188 100 48 chr6 110132001 110132442 -79147112 + MLT2B1 LTR ERVL 57 520 0 321 219 323 0 chr6 110132480 110132576 -79146978 - L2 LINE L2 0 3313 3187 332 59 20 0 chr6 110133285 110133336 -79146218 + (TC)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr6 110133495 110133518 -79146036 + AT_rich Low_complexity Low_complexity 1 23 0 2404 68 0 10 chr6 110135210 110135521 -79144033 - AluY SINE Alu -3 308 1 333 279 10 19 chr6 110135988 110136092 -79143462 + L2 LINE L2 2440 2542 -772 838 295 16 8 chr6 110137356 110137610 -79141944 + L2 LINE L2 2538 2793 -521 277 347 42 46 chr6 110137637 110137922 -79141632 + L2 LINE L2 454 737 -2577 364 305 54 35 chr6 110138202 110138405 -79141149 + L2 LINE L2 1182 1388 -1926 1362 62 0 0 chr6 110138654 110138830 -79140724 + L1PA8 LINE L1 5994 6169 -3 498 259 123 42 chr6 110138833 110139215 -79140339 + L1M4 LINE L1 2154 2566 -3580 208 241 37 0 chr6 110139237 110139291 -79140263 - MIR SINE MIR -26 236 181 * 1793 272 51 41 chr6 110139289 110140062 -79139492 + L2 LINE L2 2294 3070 -243 478 173 29 72 chr6 110140246 110140385 -79139169 - MIR SINE MIR -73 189 57 1267 283 99 48 chr6 110140452 110140712 -79138842 + L1M4 LINE L1 2559 2804 -3342 2301 116 11 8 chr6 110140712 110141066 -79138488 - THE1A LTR MaLR 0 355 1 1267 283 99 48 chr6 110141066 110141172 -79138382 + L1M4 LINE L1 2804 2903 -3243 2242 112 3 10 chr6 110141172 110141486 -79138068 + AluSx SINE Alu 1 312 0 1267 283 99 48 chr6 110141486 110142026 -79137528 + L1M4 LINE L1 2903 3512 -2634 334 268 0 48 chr6 110142137 110142305 -79137249 + L1P LINE L1 3606 3765 -2381 2286 118 67 58 chr6 110142635 110143116 -79136438 + L1MA8 LINE L1 5807 6291 0 354 228 8 122 chr6 110143285 110143540 -79136014 + HAL1 LINE L1 2281 2506 -1 492 245 10 42 chr6 110143558 110143715 -79135839 + L1M4 LINE L1 3849 4000 -2146 2543 111 67 10 chr6 110143715 110144120 -79135434 + MSTA LTR MaLR 1 428 0 492 245 10 42 chr6 110144120 110144154 -79135400 + L1M4 LINE L1 4000 4034 -2112 614 258 38 7 chr6 110144159 110144368 -79135186 - MIR SINE MIR -2 260 4 316 329 65 13 chr6 110144368 110144523 -79135031 + L1M4 LINE L1 4029 4191 -1955 1017 197 6 0 chr6 110144526 110144704 -79134850 + AluJo SINE Alu 1 179 -133 282 311 61 20 chr6 110144728 110145136 -79134418 + L1M4 LINE L1 4182 4606 -1540 22 56 0 0 chr6 110145180 110145216 -79134338 + AT_rich Low_complexity Low_complexity 1 36 0 423 351 54 5 chr6 110145419 110145624 -79133930 - L2 LINE L2 -1308 2006 1792 293 283 25 25 chr6 110146418 110146616 -79132938 - L1MC4 LINE L1 -1 8041 7844 257 253 24 0 chr6 110146666 110146749 -79132805 - L1ME2 LINE L1 -10 6154 6070 3406 163 14 14 chr6 110147309 110147936 -79131618 - MER52A LTR ERV1 0 1755 1129 1610 158 110 122 chr6 110147932 110148514 -79131040 - MER52A LTR ERV1 -282 1012 379 * 438 175 2 45 chr6 110148507 110148616 -79130938 - MER52C LTR ERV1 -1190 102 1 * 546 157 0 0 chr6 110148854 110148943 -79130611 + FLAM_A SINE Alu 41 129 -13 201 147 0 0 chr6 110150384 110150418 -79129136 + (CTA)n Simple_repeat Simple_repeat 3 36 0 198 0 0 0 chr6 110150416 110150438 -79129116 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 392 236 136 0 chr6 110150971 110151081 -79128473 + L2 LINE L2 3181 3305 -8 1804 184 0 10 chr6 110151363 110151672 -79127882 - AluJo SINE Alu -2 310 5 21 71 0 0 chr6 110151701 110151743 -79127811 + AT_rich Low_complexity Low_complexity 1 42 0 1438 285 123 16 chr6 110152013 110152751 -79126803 - L1MC4a LINE L1 -1732 6076 5260 241 293 81 0 chr6 110152879 110152978 -79126576 - MIR SINE MIR -74 188 82 184 263 70 35 chr6 110153085 110153199 -79126355 - MIR SINE MIR -53 209 92 418 141 0 13 chr6 110153200 110153278 -79126276 - L1P3 LINE L1 -5096 1365 1289 1150 263 25 28 chr6 110153751 110154352 -79125202 + L1PA10 LINE L1 78 797 -5078 * 6182 117 12 93 chr6 110154350 110156440 -79123114 + L1PA10 LINE L1 1628 3885 -2598 2184 140 3 0 chr6 110156440 110156748 -79122806 + AluSx SINE Alu 1 309 -3 6182 117 12 93 chr6 110156748 110157848 -79121706 + L1PA10 LINE L1 3885 5072 -1411 6613 28 3 1 chr6 110157848 110158629 -79120925 + L1PA5 LINE L1 5365 6146 -8 6182 117 12 93 chr6 110158629 110160642 -79118912 + L1PA10 LINE L1 5072 6483 0 25 65 0 0 chr6 110160765 110160811 -79118743 + AT_rich Low_complexity Low_complexity 1 46 0 1936 164 0 7 chr6 110160979 110161283 -79118271 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr6 110161316 110161340 -79118214 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 110161353 110161374 -79118180 + AT_rich Low_complexity Low_complexity 1 21 0 246 62 0 0 chr6 110162663 110162695 -79116859 + (A)n Simple_repeat Simple_repeat 1 32 0 915 200 5 22 chr6 110162801 110162986 -79116568 - AluSg/x SINE Alu -10 300 119 2513 54 0 0 chr6 110163159 110163457 -79116097 + AluY SINE Alu 1 298 -13 2500 18 0 0 chr6 110163457 110163798 -79115756 + L1PA4 LINE L1 5842 6149 -6 21 36 0 0 chr6 110164203 110164231 -79115323 + AT_rich Low_complexity Low_complexity 1 28 0 277 203 60 9 chr6 110164375 110164470 -79115084 - MLT1L LTR MaLR -27 588 464 242 289 162 61 chr6 110164587 110164815 -79114739 - MLT1L LTR MaLR -355 260 10 27 29 0 0 chr6 110165048 110165082 -79114472 + AT_rich Low_complexity Low_complexity 1 34 0 299 264 117 80 chr6 110165469 110165821 -79113733 + L1ME LINE L1 5357 5721 -400 1748 153 7 28 chr6 110165894 110166182 -79113372 + AluJo SINE Alu 1 282 -30 239 328 74 16 chr6 110166806 110166928 -79112626 - MIR SINE MIR -48 214 86 189 239 239 11 chr6 110167064 110167152 -79112402 - L2 LINE L2 -4 3309 3202 243 344 104 42 chr6 110167157 110167369 -79112185 - L2 LINE L2 -1921 1393 1169 2851 185 39 76 chr6 110167453 110168199 -79111355 + MER50 LTR ERV1 1 718 -16 713 256 90 90 chr6 110170958 110171404 -79108150 + MLT1J2 LTR MaLR 5 450 0 1133 241 85 23 chr6 110171941 110172377 -79107177 - MER74A LTR ERVL -12 546 5 2855 133 41 12 chr6 110173440 110173923 -79105631 + LOR1a LTR ERV1 1 497 0 1996 147 3 3 chr6 110174344 110174644 -79104910 - AluSx SINE Alu -12 300 1 298 240 94 21 chr6 110175788 110175884 -79103670 - L2 LINE L2 -32 3240 3138 33 0 0 0 chr6 110176463 110176496 -79103058 + AT_rich Low_complexity Low_complexity 1 33 0 249 308 31 64 chr6 110176665 110176724 -79102830 + MIR SINE MIR 13 72 -136 2641 40 0 0 chr6 110176724 110177025 -79102529 - AluY SINE Alu -10 301 1 249 308 31 64 chr6 110177025 110177107 -79102447 + MIR SINE MIR 72 136 -72 2063 115 7 0 chr6 110177561 110177860 -79101694 - AluSx SINE Alu 0 301 1 216 0 0 0 chr6 110177989 110178013 -79101541 + (A)n Simple_repeat Simple_repeat 1 24 0 329 259 93 19 chr6 110178027 110178135 -79101419 - L2 LINE L2 -16 3297 3182 22 0 0 0 chr6 110179840 110179862 -79099692 + AT_rich Low_complexity Low_complexity 1 22 0 212 252 171 63 chr6 110180632 110180743 -79098811 - MER5A DNA MER1_type -27 162 40 * 336 229 181 29 chr6 110180659 110180764 -79098790 + MER5A DNA MER1_type 60 180 -9 375 211 0 14 chr6 110181860 110181931 -79097623 - MIR3 SINE MIR -24 184 115 1737 151 16 71 chr6 110182492 110182803 -79096751 + AluJb SINE Alu 1 294 -18 522 251 231 0 chr6 110182988 110183187 -79096367 + MIR SINE MIR 7 251 -11 25 31 0 0 chr6 110185750 110185782 -79093772 + AT_rich Low_complexity Low_complexity 1 32 0 2255 80 42 0 chr6 110186777 110187065 -79092489 - AluSp SINE Alu -13 300 1 231 143 0 89 chr6 110187865 110187921 -79091633 - L2 LINE L2 0 3313 3263 277 238 0 101 chr6 110187993 110188097 -79091457 + HAL1 LINE L1 52 134 -2373 1601 99 0 43 chr6 110188097 110188330 -79091224 - AluY SINE Alu -5 306 84 277 238 0 101 chr6 110188330 110188393 -79091161 + HAL1 LINE L1 134 202 -2305 539 281 75 32 chr6 110188676 110188954 -79090600 + HAL1 LINE L1 529 818 -1689 726 159 0 0 chr6 110189806 110189913 -79089641 - AluJb SINE Alu -14 298 192 327 314 108 15 chr6 110190109 110190516 -79089038 - HAL1 LINE L1 -21 2486 2042 250 202 64 37 chr6 110190537 110190646 -79088908 - L1P LINE L1 -762 5393 5282 1983 163 77 8 chr6 110190698 110191061 -79088493 - MSTB LTR MaLR -38 388 1 2450 244 111 11 chr6 110191084 110192188 -79087366 + ERVL LTR ERVL 2045 3302 -2462 1484 278 48 30 chr6 110192183 110192687 -79086867 + ERVL LTR ERVL 3403 3915 -1849 * 1495 266 37 8 chr6 110192685 110193068 -79086486 + ERVL LTR ERVL 4024 4417 -1347 721 252 102 15 chr6 110193376 110193582 -79085972 - MIR SINE MIR -38 224 1 1587 51 0 0 chr6 110194345 110194541 -79085013 - L1PA3 LINE L1 -3 6152 5957 285 227 11 11 chr6 110195014 110195102 -79084452 + (TA)n Simple_repeat Simple_repeat 1 88 0 310 303 99 12 chr6 110195310 110195472 -79084082 + MIR SINE MIR 34 209 -53 311 210 109 99 chr6 110195574 110195783 -79083771 + L1ME4a LINE L1 5539 5744 -377 2079 135 3 0 chr6 110195783 110196079 -79083475 + AluSx SINE Alu 5 301 -11 311 210 109 99 chr6 110196079 110196276 -79083278 + L1ME4a LINE L1 5744 5964 -157 495 0 0 0 chr6 110197403 110197458 -79082096 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1489 190 150 5 chr6 110198218 110198269 -79081285 - L1 LINE L1 -3183 2963 2921 4025 156 17 0 chr6 110198269 110198985 -79080569 - L1MA4A LINE L1 0 6303 5576 1489 190 150 5 chr6 110198985 110199307 -79080247 - L1 LINE L1 -3225 2921 2536 522 213 0 0 chr6 110199764 110199858 -79079696 - MIR SINE MIR -124 138 45 537 265 143 13 chr6 110199949 110200179 -79079375 - MIR SINE MIR -1 261 2 2049 171 29 14 chr6 110200907 110201322 -79078232 + L1MA10 LINE L1 5913 6333 -1 363 261 46 14 chr6 110201977 110202137 -79077417 + L1ME LINE L1 2 169 -5901 372 275 139 78 chr6 110203657 110203789 -79075765 - L1MC4a LINE L1 -1907 5901 5779 1546 195 3 14 chr6 110203789 110204102 -79075452 - AluJb SINE Alu 0 312 3 372 275 139 78 chr6 110204102 110204277 -79075277 - L1MC4a LINE L1 -2029 5779 5574 305 253 93 11 chr6 110204350 110204532 -79075022 + L1ME4a LINE L1 5737 5933 -188 218 247 117 13 chr6 110204532 110204609 -79074945 + MIR SINE MIR 108 192 -70 2329 76 0 0 chr6 110204612 110204903 -79074651 + AluY SINE Alu 1 291 -20 378 214 199 70 chr6 110205390 110205591 -79073963 + MIR SINE MIR 36 262 0 21 0 0 0 chr6 110208629 110208650 -79070904 + AT_rich Low_complexity Low_complexity 1 21 0 212 339 15 0 chr6 110209109 110209174 -79070380 - L2 LINE L2 -6 3266 3201 1275 324 55 87 chr6 110209180 110209423 -79070131 + L1ME3 LINE L1 5330 5579 -583 827 154 0 22 chr6 110209423 110209559 -79069995 - FLAM_C SINE Alu 0 133 1 1275 324 55 87 chr6 110209559 110210169 -79069385 + L1ME3 LINE L1 5579 6156 -6 2194 105 0 3 chr6 110211153 110211449 -79068105 + AluSg SINE Alu 1 295 -15 21 0 0 0 chr6 110212826 110212847 -79066707 + AT_rich Low_complexity Low_complexity 1 21 0 2187 125 0 0 chr6 110214597 110214900 -79064654 + AluSq SINE Alu 3 305 -8 512 282 48 60 chr6 110216275 110216527 -79063027 + MIR SINE MIR 14 262 0 184 325 190 18 chr6 110217826 110217989 -79061565 + MIR3 SINE MIR 15 205 -3 2345 143 5 30 chr6 110218132 110218532 -79061022 + MLT1B LTR MaLR 1 390 0 293 340 120 10 chr6 110219390 110219590 -79059964 - L2 LINE L2 -456 2858 2637 22 0 0 0 chr6 110219725 110219747 -79059807 + AT_rich Low_complexity Low_complexity 1 22 0 452 256 82 14 chr6 110219748 110219914 -79059640 - L1ME3 LINE L1 -2 6164 5995 * 797 152 58 0 chr6 110219912 110220050 -79059504 + L1MC4a LINE L1 7216 7361 -447 937 253 90 89 chr6 110220050 110220201 -79059353 + MLT1G1 LTR MaLR 14 163 -432 2381 98 0 3 chr6 110220201 110220506 -79059048 + AluSq SINE Alu 1 304 -9 937 253 90 89 chr6 110220506 110220892 -79058662 + MLT1G1 LTR MaLR 163 592 -3 530 190 52 9 chr6 110220907 110221023 -79058531 + L2 LINE L2 3192 3312 -1 1723 229 71 62 chr6 110222562 110223392 -79056162 + L1ME3 LINE L1 5171 6013 -149 747 120 49 35 chr6 110223560 110223702 -79055852 + L1 LINE L1 4558 4701 -1445 2119 125 0 3 chr6 110223717 110224013 -79055541 + AluSq SINE Alu 1 295 -18 377 244 118 0 chr6 110224083 110224218 -79055336 + L1ME4a LINE L1 5785 5935 -186 6813 62 18 4 chr6 110224261 110225234 -79054320 + L1PA8 LINE L1 5187 6172 0 192 136 0 0 chr6 110225262 110225290 -79054264 + (A)n Simple_repeat Simple_repeat 1 31 -13 1687 78 45 16 chr6 110225290 110225534 -79054020 + AluY SINE Alu 53 303 -8 192 136 0 0 chr6 110225534 110225549 -79054005 + (A)n Simple_repeat Simple_repeat 30 44 0 487 297 73 24 chr6 110226604 110226769 -79052785 + MIR SINE MIR 60 232 -30 361 336 31 8 chr6 110228169 110228297 -79051257 - L2 LINE L2 -2 3270 3140 5777 145 88 25 chr6 110228407 110229538 -79050016 + Tigger3b DNA MER2_type 1 1203 -28 22 56 0 0 chr6 110230175 110230211 -79049343 + AT_rich Low_complexity Low_complexity 1 36 0 180 111 0 0 chr6 110230699 110230726 -79048828 + (TATATG)n Simple_repeat Simple_repeat 3 29 0 25 51 0 0 chr6 110231521 110231560 -79047994 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 110232323 110232344 -79047210 + AT_rich Low_complexity Low_complexity 1 21 0 273 287 150 47 chr6 110232439 110233039 -79046515 + L1MEd LINE L1 636 1297 -4908 1430 168 114 54 chr6 110233627 110233981 -79045573 - MLT1B LTR MaLR -14 579 1 851 288 114 17 chr6 110234139 110234947 -79044607 + L1MEd LINE L1 2149 2999 -3216 1625 200 0 23 chr6 110234951 110235251 -79044303 + AluJo SINE Alu 4 296 -16 206 219 0 62 chr6 110235350 110235414 -79044140 + A-rich Low_complexity Low_complexity 2 61 0 253 207 0 0 chr6 110235422 110235480 -79044074 - L1M4 LINE L1 -2917 3229 3172 302 206 30 84 chr6 110235513 110235644 -79043910 + L1ME3A LINE L1 5821 5944 -226 203 274 16 0 chr6 110236491 110236553 -79043001 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 249 270 0 67 chr6 110237066 110237155 -79042399 + L1ME4a LINE L1 5601 5683 -438 2043 132 6 0 chr6 110237162 110237473 -79042081 + AluSq SINE Alu 1 313 0 244 191 107 0 chr6 110237538 110237622 -79041932 + L1ME4a LINE L1 5770 5862 -259 348 203 109 55 chr6 110237716 110237794 -79041760 + L1ME4a LINE L1 5986 6075 -46 1761 174 0 29 chr6 110237794 110238110 -79041444 - AluJb SINE Alu -5 307 1 348 203 109 55 chr6 110238110 110238159 -79041395 + L1ME4a LINE L1 6075 6120 -1 1187 88 6 0 chr6 110238172 110238342 -79041212 + L1PA13 LINE L1 5992 6162 -1 188 172 0 46 chr6 110240865 110240952 -79038602 + (TA)n Simple_repeat Simple_repeat 2 84 0 210 219 0 0 chr6 110242957 110242998 -79036556 + (CGG)n Simple_repeat Simple_repeat 2 42 0 285 246 36 18 chr6 110243121 110243231 -79036323 + GA-rich Low_complexity Low_complexity 1 112 0 320 279 130 68 chr6 110244098 110244259 -79035295 + MER91A DNA MER1_type 3 173 -23 524 284 114 92 chr6 110244512 110244634 -79034920 - MLT1K LTR MaLR -6 582 464 297 0 0 0 chr6 110244634 110244667 -79034887 + (CA)n Simple_repeat Simple_repeat 1 33 0 524 284 114 92 chr6 110244667 110245112 -79034442 - MLT1K LTR MaLR -124 464 2 332 291 77 0 chr6 110245774 110245891 -79033663 - MIR3 SINE MIR -2 206 81 194 330 136 25 chr6 110246473 110246591 -79032963 + MIR SINE MIR 10 140 -122 761 200 41 29 chr6 110246660 110246830 -79032724 - MER5B DNA MER1_type -6 172 1 547 274 73 27 chr6 110247671 110248043 -79031511 + L1MC5 LINE L1 7311 7699 -262 2331 78 3 16 chr6 110249090 110249398 -79030156 - AluY SINE Alu -7 304 1 841 145 8 0 chr6 110249525 110249649 -79029905 + FLAM_C SINE Alu 1 125 -18 15370 189 25 21 chr6 110250342 110254332 -79025222 + L1PA15 LINE L1 2816 6848 -755 1624 180 0 58 chr6 110254332 110254475 -79025079 + AluJb SINE Alu 1 151 -161 2154 107 23 3 chr6 110254475 110254775 -79024779 + AluSx SINE Alu 1 306 -6 1624 180 0 58 chr6 110254775 110254959 -79024595 + AluJb SINE Alu 151 309 -3 15370 189 25 21 chr6 110254959 110255704 -79023850 + L1PA15 LINE L1 6848 7588 -15 470 256 261 35 chr6 110256105 110256291 -79023263 - L2 LINE L2 -54 3259 3116 2469 48 0 19 chr6 110256291 110256601 -79022953 + AluY SINE Alu 1 304 -7 470 256 261 35 chr6 110256601 110256708 -79022846 - L2 LINE L2 -197 3116 3035 2589 14 17 3 chr6 110256708 110257003 -79022551 + AluYa5 SINE Alu 1 299 -12 470 256 261 35 chr6 110257003 110257056 -79022498 - L2 LINE L2 -278 3035 2833 338 258 61 0 chr6 110257102 110257234 -79022320 - MER103 DNA DNA -19 147 8 22 35 0 0 chr6 110257865 110257894 -79021660 + AT_rich Low_complexity Low_complexity 1 29 0 1973 158 111 35 chr6 110258038 110258463 -79021091 + MSTB2 LTR MaLR 1 457 0 3032 148 39 10 chr6 110258728 110259248 -79020306 + MER44D DNA MER2_type 7 596 -9 734 378 47 20 chr6 110259282 110259922 -79019632 - ERVL LTR ERVL -3606 2158 1502 890 228 17 0 chr6 110260456 110260636 -79018918 + MER5A DNA MER1_type 4 186 -3 4454 83 18 12 chr6 110261574 110262228 -79017326 - L1PB2 LINE L1 -1 6150 5493 193 366 75 12 chr6 110263660 110263821 -79015733 - L2 LINE L2 -168 3145 2975 349 211 110 0 chr6 110263984 110264093 -79015461 + L1ME4a LINE L1 5311 5431 -690 2086 112 70 48 chr6 110264252 110264421 -79015133 + THE1B LTR MaLR 1 165 -199 2152 120 0 0 chr6 110264421 110264712 -79014842 + AluSc SINE Alu 1 291 -18 2086 112 70 48 chr6 110264712 110264898 -79014656 + THE1B LTR MaLR 165 364 0 11955 87 3 1 chr6 110264898 110266475 -79013079 + THE1B-int LTR MaLR 1 1580 0 440 103 192 0 chr6 110266475 110266553 -79013001 + THE1B LTR MaLR 1 93 -271 855 114 0 0 chr6 110266554 110266677 -79012877 - THE1-int LTR MaLR -398 1182 1060 1459 144 42 23 chr6 110266677 110266941 -79012613 + THE1B LTR MaLR 96 364 0 558 241 110 28 chr6 110266941 110267232 -79012322 + L1ME4a LINE L1 5806 6120 -1 29 47 0 0 chr6 110268838 110268881 -79010673 + AT_rich Low_complexity Low_complexity 1 43 0 291 96 0 19 chr6 110268940 110268992 -79010562 - L1MA8 LINE L1 -20 6271 6221 1733 186 3 20 chr6 110269508 110269809 -79009745 + AluJo SINE Alu 1 296 -16 484 292 134 5 chr6 110271171 110271373 -79008181 + MIR SINE MIR 14 241 -21 21 71 0 0 chr6 110272177 110272219 -79007335 + AT_rich Low_complexity Low_complexity 1 42 0 356 258 70 23 chr6 110274410 110274538 -79005016 - MER94 DNA DNA 0 134 1 208 287 139 28 chr6 110274911 110275019 -79004535 + MER5B DNA MER1_type 51 170 -8 477 317 149 5 chr6 110275087 110275308 -79004246 + MIR SINE MIR 2 254 -8 247 299 103 40 chr6 110276089 110276263 -79003291 - MIR SINE MIR -71 191 7 2122 143 107 13 chr6 110277607 110277998 -79001556 + MSTA LTR MaLR 1 428 0 1082 334 104 21 chr6 110278674 110279673 -78999881 + L2 LINE L2 1894 2975 -339 2427 182 22 0 chr6 110280205 110280651 -78998903 + Tigger7 DNA MER2_type 42 497 -236 709 128 48 0 chr6 110280678 110280803 -78998751 + Tigger7 DNA MER2_type 2457 2587 0 330 310 110 19 chr6 110280877 110281358 -78998196 + L1M4 LINE L1 4533 5057 -1089 351 158 209 70 chr6 110281579 110281737 -78997817 - MER106B DNA MER1_type -17 1042 40 360 340 57 67 chr6 110282027 110282342 -78997212 + L2 LINE L2 2928 3239 -33 2192 87 7 0 chr6 110283044 110283344 -78996210 - AluSx SINE Alu -10 302 1 22 0 0 0 chr6 110283351 110283373 -78996181 + AT_rich Low_complexity Low_complexity 1 22 0 431 234 88 15 chr6 110284219 110284356 -78995198 - MER5B DNA MER1_type -28 150 4 428 204 165 0 chr6 110286068 110286171 -78993383 + L2 LINE L2 3189 3308 -5 344 315 135 10 chr6 110286210 110286410 -78993144 + MIR SINE MIR 22 246 -16 29 0 0 0 chr6 110286540 110286569 -78992985 + AT_rich Low_complexity Low_complexity 1 29 0 1626 187 152 42 chr6 110287298 110287753 -78991801 - MLT1D LTR MaLR 0 505 1 5493 110 13 15 chr6 110287767 110289173 -78990381 - L1PA11 LINE L1 -82 6092 4690 30 59 0 0 chr6 110289359 110289410 -78990144 + AT_rich Low_complexity Low_complexity 1 51 0 233 154 0 0 chr6 110289428 110289467 -78990087 + MLT1E LTR MaLR 95 133 -460 232 61 0 61 chr6 110289476 110289525 -78990029 + (AATAG)n Simple_repeat Simple_repeat 5 50 0 738 228 38 87 chr6 110289530 110289830 -78989724 + MLT1E LTR MaLR 140 469 -155 230 319 9 0 chr6 110289834 110289950 -78989604 + L1M4 LINE L1 3890 4006 -2140 249 298 96 28 chr6 110290071 110290179 -78989375 + L1M4 LINE L1 4234 4333 -1813 2001 148 6 3 chr6 110290179 110290490 -78989064 + AluSx SINE Alu 1 312 0 249 298 96 28 chr6 110290490 110290912 -78988642 + L1M4 LINE L1 4333 4800 -1346 583 261 78 20 chr6 110291577 110291822 -78987732 + MIR SINE MIR 4 262 0 631 197 15 8 chr6 110292303 110292435 -78987119 + MLT1E LTR MaLR 492 624 0 339 261 12 37 chr6 110293296 110293457 -78986097 - L1MC5 LINE L1 -44 7917 7761 443 203 0 0 chr6 110294102 110294181 -78985373 - L2 LINE L2 -327 2986 2908 210 222 127 0 chr6 110294775 110294838 -78984716 - MIR3 SINE MIR -8 200 130 231 276 0 58 chr6 110295281 110295368 -78984186 - MLT1K LTR MaLR -415 173 92 381 250 17 50 chr6 110295690 110295810 -78983744 - MIR SINE MIR -73 135 20 721 175 5 7 chr6 110297186 110297364 -78982190 - MLT1C LTR MaLR 0 467 211 1024 319 118 13 chr6 110297645 110298321 -78981233 + L2 LINE L2 1726 2472 -842 512 283 89 21 chr6 110298644 110298835 -78980719 + MIR SINE MIR 59 262 0 240 329 58 29 chr6 110298851 110298988 -78980566 + L2 LINE L2 3011 3151 -121 555 229 156 11 chr6 110299534 110299713 -78979841 + MER63A DNA MER1_type 1 205 -5 1172 270 40 50 chr6 110299967 110300448 -78979106 + MLT1D LTR MaLR 29 504 -1 2143 145 6 0 chr6 110300798 110301116 -78978438 - 7SLRNA srpRNA srpRNA 0 320 1 287 319 12 117 chr6 110301379 110301542 -78978012 - L2 LINE L2 -6 3266 3121 1263 229 14 86 chr6 110301882 110302094 -78977460 + MER34 LTR ERV1 1 227 -315 3120 103 12 0 chr6 110302094 110302523 -78977031 - MER57B LTR ERV1 0 434 1 1263 229 14 86 chr6 110302523 110302894 -78976660 + MER34 LTR ERV1 227 542 0 771 246 37 0 chr6 110304024 110304211 -78975343 - MER20 DNA MER1_type -25 194 1 23 54 0 0 chr6 110305801 110305838 -78973716 + AT_rich Low_complexity Low_complexity 1 37 0 192 97 0 0 chr6 110306680 110306711 -78972843 + (CA)n Simple_repeat Simple_repeat 2 32 0 327 288 198 23 chr6 110306717 110306894 -78972660 - L1MC4a LINE L1 -1862 5946 5739 222 180 40 0 chr6 110306895 110306945 -78972609 + CT-rich Low_complexity Low_complexity 1 52 0 374 282 81 60 chr6 110306964 110307212 -78972342 - L1MC4a LINE L1 -420 5701 5449 296 176 222 9 chr6 110308107 110308215 -78971339 + MER103 DNA DNA 35 165 -1 258 246 63 40 chr6 110308493 110308619 -78970935 + LTR67 LTR ERVL 418 546 -11 270 219 16 0 chr6 110309097 110309161 -78970393 - L2 LINE L2 -6 3307 3243 317 293 133 60 chr6 110310419 110310586 -78968968 - L1M2 LINE L1 -5443 1406 1253 180 0 0 0 chr6 110310586 110310606 -78968948 + (CGGGGG)n Simple_repeat Simple_repeat 5 24 0 317 293 133 60 chr6 110310606 110310763 -78968791 - L1M2 LINE L1 -5596 1253 560 384 130 0 0 chr6 110310906 110310975 -78968579 + (CA)n Simple_repeat Simple_repeat 1 69 0 24 32 0 0 chr6 110311459 110311490 -78968064 + AT_rich Low_complexity Low_complexity 1 31 0 408 261 211 0 chr6 110312544 110312705 -78966849 - MIR SINE MIR -50 212 18 274 274 65 0 chr6 110314035 110314097 -78965457 - MIR SINE MIR -80 182 117 603 310 67 5 chr6 110316424 110316666 -78962888 + MIR SINE MIR 3 256 -6 1702 183 7 14 chr6 110318696 110318986 -78960568 - AluJo SINE Alu -19 293 6 196 214 162 68 chr6 110320072 110320189 -78959365 + MIR SINE MIR 85 212 -50 180 136 68 68 chr6 110320316 110320360 -78959194 - MER5A DNA MER1_type -26 163 120 1053 275 99 0 chr6 110322537 110322882 -78956672 + L2 LINE L2 2384 2762 -552 479 296 8 70 chr6 110322927 110323170 -78956384 + L2 LINE L2 2910 3137 -176 737 219 21 17 chr6 110323186 110323419 -78956135 - L1ME1 LINE L1 -4 6162 5929 198 0 0 0 chr6 110324751 110324773 -78954781 + (CAG)n Simple_repeat Simple_repeat 3 24 0 445 363 54 5 chr6 110324789 110325012 -78954542 + MIR SINE MIR 26 259 -3 408 328 8 0 chr6 110325403 110325525 -78954029 - L2 LINE L2 -6 3266 3144 532 326 123 61 chr6 110325925 110326683 -78952871 - L2 LINE L2 -631 2683 1879 21 0 0 0 chr6 110327273 110327294 -78952260 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr6 110328775 110328812 -78950742 + (TG)n Simple_repeat Simple_repeat 1 37 0 578 221 0 6 chr6 110329157 110329315 -78950239 + (CA)n Simple_repeat Simple_repeat 2 158 0 360 253 81 0 chr6 110329654 110329753 -78949801 - MIR SINE MIR -59 149 43 183 367 0 13 chr6 110331518 110331597 -78947957 - L2 LINE L2 -99 3173 3096 22 0 0 0 chr6 110332294 110332316 -78947238 + AT_rich Low_complexity Low_complexity 1 22 0 642 238 21 48 chr6 110332445 110332634 -78946920 + L2 LINE L2 3120 3303 -10 1307 200 49 27 chr6 110333158 110333523 -78946031 + MER93b LTR ERV1 1 373 0 741 268 76 13 chr6 110333793 110334017 -78945537 - MIR SINE MIR -6 256 19 410 202 36 12 chr6 110334339 110334423 -78945131 + MIR SINE MIR 37 122 -140 362 330 182 8 chr6 110335120 110335378 -78944176 + L2 LINE L2 3011 3313 0 21 89 0 0 chr6 110335998 110336054 -78943500 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr6 110336191 110336221 -78943333 + AT_rich Low_complexity Low_complexity 1 30 0 254 93 0 23 chr6 110336716 110336759 -78942795 + (TGAG)n Simple_repeat Simple_repeat 1 42 0 27 62 0 0 chr6 110337206 110337254 -78942300 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr6 110337855 110337877 -78941677 + AT_rich Low_complexity Low_complexity 1 22 0 238 167 0 0 chr6 110337946 110337988 -78941566 - HAL1 LINE L1 -115 2392 2351 3473 131 37 14 chr6 110337989 110338518 -78941036 + MER6A DNA MER2_type 1 547 -318 2039 182 60 133 chr6 110338518 110339302 -78940252 + LTR8A LTR ERV1 1 727 0 3473 131 37 14 chr6 110339302 110339362 -78940192 + MER6A DNA MER2_type 547 604 -1 1544 230 81 43 chr6 110339363 110339469 -78940085 - HAL1 LINE L1 -155 2352 2252 2157 138 0 0 chr6 110339469 110339767 -78939787 + AluSx SINE Alu 2 299 -13 1544 230 81 43 chr6 110339767 110340406 -78939148 - HAL1 LINE L1 -255 2252 1573 1671 285 82 28 chr6 110340418 110340433 -78939121 - HAL1 LINE L1 -1574 933 920 189 0 0 0 chr6 110340433 110340454 -78939100 + (T)n Simple_repeat Simple_repeat 1 21 0 1671 285 82 28 chr6 110340454 110340988 -78938566 - HAL1 LINE L1 -1587 920 302 1494 191 48 25 chr6 110340988 110341345 -78938209 - MLT1A1 LTR MaLR 0 365 1 1671 285 82 28 chr6 110341345 110341605 -78937949 - HAL1 LINE L1 -2205 302 58 21 0 0 0 chr6 110341625 110341646 -78937908 + AT_rich Low_complexity Low_complexity 1 21 0 2040 114 70 56 chr6 110341733 110341775 -78937779 - THE1B LTR MaLR 0 364 324 2353 105 0 0 chr6 110341775 110342079 -78937475 + AluSx SINE Alu 1 304 -8 2040 114 70 56 chr6 110342079 110342395 -78937159 - THE1B LTR MaLR -40 324 1 382 327 25 43 chr6 110342397 110342559 -78936995 - MIR SINE MIR -102 160 2 319 348 96 6 chr6 110342761 110342939 -78936615 + MIR SINE MIR 48 241 -21 235 353 43 52 chr6 110343191 110343307 -78936247 + L2 LINE L2 3153 3267 -5 21 0 0 0 chr6 110343628 110343649 -78935905 + AT_rich Low_complexity Low_complexity 1 21 0 268 276 29 9 chr6 110344181 110344286 -78935268 + MER94 DNA DNA 2 108 -26 550 300 73 17 chr6 110344440 110344673 -78934881 - L2 LINE L2 -191 3081 2836 2043 144 41 3 chr6 110345453 110345815 -78933739 - MLT1B LTR MaLR -14 376 1 391 318 93 16 chr6 110346097 110346226 -78933328 + MIR SINE MIR 14 152 -110 207 139 0 0 chr6 110346286 110346322 -78933232 + (CAT)n Simple_repeat Simple_repeat 2 37 0 586 188 40 69 chr6 110346423 110346625 -78932929 + MER34C LTR ERV1 307 502 -83 3972 132 82 26 chr6 110346704 110347440 -78932114 - MER4E LTR ERV1 0 779 3 1897 226 23 49 chr6 110347612 110348142 -78931412 - LTR31 LTR ERV1 0 619 104 223 333 142 14 chr6 110348802 110348943 -78930611 - MIR SINE MIR -14 248 90 1602 191 55 87 chr6 110349149 110349713 -78929841 - MER34C LTR ERV1 0 585 40 447 156 13 0 chr6 110349944 110350021 -78929533 - MER31B LTR ERV1 -388 78 1 2284 91 0 0 chr6 110350492 110350800 -78928754 + AluY SINE Alu 1 308 -3 2126 155 53 22 chr6 110350982 110351394 -78928160 - L1PA16 LINE L1 -9 6157 5733 29 47 0 0 chr6 110351974 110352017 -78927537 + AT_rich Low_complexity Low_complexity 1 43 0 306 194 0 0 chr6 110353524 110353596 -78925958 + (TA)n Simple_repeat Simple_repeat 1 72 0 306 115 0 0 chr6 110353595 110353647 -78925907 + (GA)n Simple_repeat Simple_repeat 2 53 0 511 280 81 21 chr6 110353719 110353905 -78925649 - L2 LINE L2 0 3313 3117 496 270 162 4 chr6 110354043 110354284 -78925270 - MARNA DNA Mariner -198 388 110 758 195 20 147 chr6 110354316 110354567 -78924987 + MER20 DNA MER1_type 1 219 0 821 352 92 38 chr6 110354743 110355663 -78923891 + L2 LINE L2 188 1157 -2157 843 329 199 14 chr6 110355898 110356790 -78922764 + L2 LINE L2 2212 3272 0 26 0 0 0 chr6 110357008 110357034 -78922520 + AT_rich Low_complexity Low_complexity 1 26 0 1307 184 23 23 chr6 110357896 110357974 -78921580 - MER33 DNA MER1_type -2267 318 241 2313 101 3 0 chr6 110357974 110358272 -78921282 - AluSq SINE Alu -14 299 1 1307 184 23 23 chr6 110358272 110358502 -78921052 - MER33 DNA MER1_type -2343 242 10 2250 107 3 0 chr6 110359851 110360142 -78919412 - AluSx SINE Alu -20 292 1 624 210 8 8 chr6 110360229 110360353 -78919201 + MIR SINE MIR 118 241 -21 205 348 0 0 chr6 110361919 110361988 -78917566 + GA-rich Low_complexity Low_complexity 2 70 0 2093 120 0 3 chr6 110362707 110363019 -78916535 - AluSx SINE Alu 0 311 1 448 241 39 112 chr6 110363237 110363469 -78916085 - MIR SINE MIR -12 250 36 13361 188 8 10 chr6 110364257 110366932 -78912622 - L1PA15 LINE L1 -3 7600 4931 2631 89 8 56 chr6 110366932 110367326 -78912228 - THE1C LTR MaLR 0 375 1 13361 188 8 10 chr6 110367326 110368692 -78910862 - L1PA15 LINE L1 -2672 4931 3564 * 33761 54 3 0 chr6 110368688 110373141 -78906413 - L1P LINE L1 -1681 4465 1 3047 32 0 0 chr6 110373141 110373546 -78906008 - L1P LINE L1 -2806 3340 2936 7641 27 0 0 chr6 110373546 110375233 -78904321 + L1PA4 LINE L1 4464 6150 -5 6284 251 45 30 chr6 110375233 110378634 -78900920 - L1PA15 LINE L1 -4007 3577 8 285 300 65 17 chr6 110378896 110379037 -78900517 - MIR SINE MIR -65 143 14 250 180 0 0 chr6 110379292 110379342 -78900212 - MLT1H LTR MaLR -4 545 496 1878 193 46 94 chr6 110379745 110380290 -78899264 - LTR40a LTR ERVL 0 519 1 183 372 55 35 chr6 110380311 110380456 -78899098 + L2 LINE L2 3165 3312 -1 333 141 129 94 chr6 110381037 110381122 -78898432 + L2 LINE L2 3172 3259 -13 284 317 84 30 chr6 110381152 110381319 -78898235 + MIR SINE MIR 84 259 -3 180 0 0 0 chr6 110382500 110382520 -78897034 + (CAA)n Simple_repeat Simple_repeat 2 21 0 522 274 7 20 chr6 110382841 110382994 -78896560 - MIR SINE MIR 0 262 112 1379 188 38 0 chr6 110383586 110383826 -78895728 + AluJo SINE Alu 1 249 -63 291 136 0 0 chr6 110383880 110383924 -78895630 - FRAM/FAM SINE Alu -100 66 23 21 36 0 0 chr6 110384278 110384306 -78895248 + AT_rich Low_complexity Low_complexity 1 28 0 1747 196 0 0 chr6 110385238 110385534 -78894020 + AluJb SINE Alu 5 300 -12 23 108 0 0 chr6 110385762 110385855 -78893699 + AT_rich Low_complexity Low_complexity 1 93 0 206 328 0 35 chr6 110385956 110386014 -78893540 - L2 LINE L2 -8 3264 3209 397 165 25 13 chr6 110386387 110386466 -78893088 + MER5C DNA MER1_type 4 83 -241 2974 162 39 5 chr6 110386877 110387470 -78892084 + L1MC1 LINE L1 5715 6327 -6 28 0 0 0 chr6 110387470 110387498 -78892056 + AT_rich Low_complexity Low_complexity 1 28 0 1071 203 19 14 chr6 110387565 110387800 -78891754 - AluJb SINE Alu 0 312 91 1381 229 83 29 chr6 110388066 110388441 -78891113 - MLT2B1 LTR ERVL -11 509 115 14420 197 20 17 chr6 110388581 110394291 -78885263 - L1PA15 LINE L1 0 6816 1092 3180 232 39 29 chr6 110394269 110395033 -78884521 - L1PA15 LINE L1 -6015 772 1 * 259 335 78 37 chr6 110395112 110395303 -78884251 + MIR SINE MIR 58 256 -6 23 68 0 0 chr6 110395432 110395476 -78884078 + AT_rich Low_complexity Low_complexity 1 44 0 225 0 0 0 chr6 110396247 110396272 -78883282 + (A)n Simple_repeat Simple_repeat 1 25 0 332 357 49 31 chr6 110398009 110398233 -78881321 - MIR SINE MIR -34 228 1 1990 159 152 22 chr6 110398281 110398728 -78880826 + MLT1D LTR MaLR 1 505 0 205 400 31 6 chr6 110399414 110399574 -78879980 + MIR SINE MIR 53 216 -46 192 125 0 0 chr6 110399657 110399689 -78879865 + (CA)n Simple_repeat Simple_repeat 1 32 0 2313 42 42 3 chr6 110400145 110400431 -78879123 + AluY SINE Alu 1 297 -14 360 191 29 29 chr6 110400471 110400576 -78878978 + Charlie7 DNA MER1_type 2459 2563 -49 353 375 62 12 chr6 110400763 110400923 -78878631 - MIR SINE MIR -79 183 16 2076 157 13 13 chr6 110400978 110401353 -78878201 + THE1C LTR MaLR 1 375 0 9771 106 65 4 chr6 110401355 110402843 -78876711 + THE1C-int LTR MaLR 3 1580 0 2033 130 52 22 chr6 110402845 110403207 -78876347 + THE1C LTR MaLR 3 375 0 391 298 173 22 chr6 110403820 110404092 -78875462 + MLT1J2 LTR MaLR 59 371 -79 1719 107 0 52 chr6 110404466 110404736 -78874818 + AluSx SINE Alu 42 297 -15 452 313 58 8 chr6 110404812 110405055 -78874499 + L1M4 LINE L1 2329 2583 -3563 1344 248 115 8 chr6 110405371 110405762 -78873792 - LTR16A LTR ERVL -2 448 16 1228 83 0 0 chr6 110405907 110406064 -78873490 - AluSc SINE Alu -18 291 135 2270 95 17 0 chr6 110406067 110406361 -78873193 - AluSg SINE Alu -11 299 1 813 263 81 17 chr6 110406796 110407093 -78872461 + L2 LINE L2 1914 2229 -1085 2134 209 21 45 chr6 110407132 110407289 -78872265 - MLT2B1 LTR ERVL 0 520 361 786 154 14 0 chr6 110407289 110407432 -78872122 - L1PA16 LINE L1 -2 6164 6020 2134 209 21 45 chr6 110407432 110407805 -78871749 - MLT2B1 LTR ERVL -159 361 3 2146 262 109 10 chr6 110407809 110408559 -78870995 + L2 LINE L2 2225 3044 -269 2442 87 0 0 chr6 110408591 110408890 -78870664 - AluSq SINE Alu -14 299 1 2184 142 24 21 chr6 110408917 110409291 -78870263 - THE1C LTR MaLR 0 375 1 267 206 15 15 chr6 110410921 110410989 -78868565 - MIR SINE MIR 0 262 195 724 266 42 8 chr6 110411808 110412048 -78867506 + MIR SINE MIR 13 262 0 32 57 0 0 chr6 110412177 110412230 -78867324 + AT_rich Low_complexity Low_complexity 1 53 0 831 113 0 0 chr6 110412399 110412505 -78867049 + FRAM SINE Alu 54 159 -17 2352 101 0 0 chr6 110413002 110413309 -78866245 + AluSg SINE Alu 1 307 -3 247 264 110 26 chr6 110413375 110413530 -78866024 - MER117 DNA MER1_type -28 169 2 355 344 108 19 chr6 110413989 110414201 -78865353 + L3 LINE CR1 1232 1462 -115 557 236 153 13 chr6 110414244 110414401 -78865153 - MER5A DNA MER1_type -2 187 9 285 274 151 0 chr6 110417028 110417134 -78862420 - L2 LINE L2 0 3313 3192 1837 163 0 7 chr6 110417462 110417757 -78861797 - AluJo SINE Alu -18 294 2 488 274 82 0 chr6 110418070 110418216 -78861338 - MIR SINE MIR -21 241 84 270 315 54 8 chr6 110418599 110418729 -78860825 - L3b LINE CR1 -120 1463 1328 217 205 26 0 chr6 110419190 110419229 -78860325 - L2 LINE L2 -13 3259 3220 764 183 0 0 chr6 110419239 110419370 -78860184 + Tigger1 DNA MER2_type 2272 2402 -16 6040 155 27 14 chr6 110419374 110421165 -78858389 - L1MA9 LINE L1 -386 6947 5123 2759 261 42 43 chr6 110421172 110422685 -78856869 - L1MA9 LINE L1 -4083 3084 1865 308 309 65 7 chr6 110422886 110423025 -78856529 - L1MA9 LINE L1 -6712 456 310 23 68 0 0 chr6 110423184 110423228 -78856326 + AT_rich Low_complexity Low_complexity 1 44 0 31 68 0 0 chr6 110423245 110423304 -78856250 + AT_rich Low_complexity Low_complexity 1 59 0 5043 159 26 33 chr6 110423542 110424806 -78854748 + L1MA4 LINE L1 4377 5647 -653 216 86 0 0 chr6 110424806 110424841 -78854713 + (TA)n Simple_repeat Simple_repeat 2 36 0 5043 159 26 33 chr6 110424841 110424921 -78854633 + L1MA4 LINE L1 5647 5726 -574 2318 97 3 25 chr6 110424921 110425240 -78854314 + AluSx SINE Alu 1 312 0 5043 159 26 33 chr6 110425240 110425660 -78853894 + L1MA4 LINE L1 5726 6128 -172 2283 95 0 0 chr6 110425660 110425981 -78853573 + AluSg SINE Alu 1 321 0 5043 159 26 33 chr6 110425981 110426146 -78853408 + L1MA4 LINE L1 6128 6293 -7 21 0 0 0 chr6 110426146 110426167 -78853387 + AT_rich Low_complexity Low_complexity 1 21 0 899 204 16 5 chr6 110426578 110426764 -78852790 - MER5A DNA MER1_type -1 188 1 2140 121 15 64 chr6 110426782 110427172 -78852382 + THE1C LTR MaLR 5 375 0 184 253 81 103 chr6 110428379 110428553 -78851001 - L2 LINE L2 -90 3223 3054 5564 148 20 20 chr6 110428613 110428920 -78850634 - L1MA7 LINE L1 0 6291 5985 2507 164 19 0 chr6 110428920 110429342 -78850212 + MSTB1 LTR MaLR 1 430 -2 5564 148 20 20 chr6 110429342 110430037 -78849517 - L1MA7 LINE L1 -305 5986 5289 358 140 0 0 chr6 110430035 110430092 -78849462 - L1MA7 LINE L1 -1424 4722 4666 * 4940 174 12 24 chr6 110430101 110431121 -78848433 - L1MA7 LINE L1 -1984 4162 3155 183 205 0 0 chr6 110431831 110431870 -78847684 + (TG)n Simple_repeat Simple_repeat 2 40 0 233 310 102 31 chr6 110432268 110432484 -78847070 - MIR SINE MIR -8 254 28 217 211 0 0 chr6 110434127 110434165 -78845389 - MIR SINE MIR -28 234 197 3154 154 30 6 chr6 110435184 110435709 -78843845 - MER44D DNA MER2_type -7 598 6 1201 185 63 24 chr6 110436367 110436742 -78842812 - LTR52 LTR ERVL -10 411 1 2182 106 0 0 chr6 110436841 110437152 -78842402 + AluSq SINE Alu 1 311 0 2150 252 58 39 chr6 110438097 110438858 -78840696 - MER20B DNA MER1_type -2 781 7 21 0 0 0 chr6 110438865 110438886 -78840668 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr6 110439204 110439233 -78840321 + (CA)n Simple_repeat Simple_repeat 2 30 0 26 64 0 0 chr6 110439628 110439675 -78839879 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr6 110439878 110439908 -78839646 + AT_rich Low_complexity Low_complexity 1 30 0 375 256 13 0 chr6 110440462 110440540 -78839014 - L2 LINE L2 0 3272 3194 843 172 0 0 chr6 110440932 110441066 -78838488 + AluSg/x SINE Alu 156 289 -23 927 301 114 73 chr6 110441171 110441637 -78837917 + L2 LINE L2 1204 1649 -1665 2018 170 0 0 chr6 110441637 110441943 -78837611 + AluSx SINE Alu 2 307 -5 927 301 114 73 chr6 110441943 110442214 -78837340 + L2 LINE L2 1649 1907 -1407 2600 58 0 0 chr6 110442214 110442525 -78837029 - AluY SINE Alu 0 311 1 927 301 114 73 chr6 110442525 110442778 -78836776 + L2 LINE L2 1907 2236 -1078 859 194 20 107 chr6 110442799 110442878 -78836676 - MER58B DNA MER1_type -2079 341 257 714 179 0 0 chr6 110442878 110442995 -78836559 + FLAM_C SINE Alu 2 118 -15 859 194 20 107 chr6 110442995 110443214 -78836340 - MER58B DNA MER1_type -2163 257 69 2703 29 3 0 chr6 110443293 110443602 -78835952 - AluY SINE Alu -1 310 1 3046 226 21 37 chr6 110443602 110444558 -78834996 - L1M4 LINE L1 -750 5396 4456 473 278 68 91 chr6 110444595 110444948 -78834606 + MLT1J LTR MaLR 15 359 -152 467 331 35 0 chr6 110445056 110445225 -78834329 - MIR SINE MIR -69 193 19 741 255 119 35 chr6 110448793 110449079 -78830475 - L2 LINE L2 -22 3291 2982 1108 307 23 39 chr6 110449125 110449558 -78829996 - L2 LINE L2 -512 2802 2377 703 230 50 6 chr6 110449758 110449919 -78829635 - MER5A DNA MER1_type -21 168 1 453 278 35 35 chr6 110449919 110450086 -78829468 - L2 LINE L2 -2028 1286 1120 196 305 12 12 chr6 110451910 110451992 -78827562 - MIR SINE MIR -38 224 143 25 0 0 0 chr6 110452989 110453014 -78826540 + AT_rich Low_complexity Low_complexity 1 25 0 294 73 0 0 chr6 110454123 110454164 -78825390 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr6 110455839 110455860 -78823694 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr6 110456056 110456085 -78823469 + AT_rich Low_complexity Low_complexity 1 29 0 340 305 224 28 chr6 110457268 110457982 -78821572 + L2 LINE L2 1793 2646 -668 278 376 31 9 chr6 110458232 110458458 -78821096 + L2 LINE L2 2437 2667 -647 584 212 22 73 chr6 110459013 110459192 -78820362 + MIR SINE MIR 79 248 -14 21 0 0 0 chr6 110459523 110459544 -78820010 + AT_rich Low_complexity Low_complexity 1 21 0 776 206 51 6 chr6 110460275 110460450 -78819104 - MER5A DNA MER1_type -1 188 6 30 45 0 0 chr6 110460976 110461020 -78818534 + AT_rich Low_complexity Low_complexity 1 44 0 280 252 34 25 chr6 110461395 110461514 -78818040 + (CATATA)n Simple_repeat Simple_repeat 1 120 0 246 338 144 6 chr6 110462470 110462630 -78816924 - MIR SINE MIR 0 262 81 52 41 0 0 chr6 110462943 110463016 -78816538 + AT_rich Low_complexity Low_complexity 1 73 0 336 290 169 32 chr6 110466518 110466642 -78812912 - L2 LINE L2 0 3272 3132 586 224 88 91 chr6 110466764 110467027 -78812527 - L2 LINE L2 -1 3312 3051 2418 198 54 11 chr6 110467121 110467656 -78811898 - MER74A LTR ERVL 0 558 1 238 254 42 14 chr6 110467692 110467763 -78811791 + L2 LINE L2 2998 3070 -202 263 312 140 73 chr6 110468125 110468452 -78811102 - L2 LINE L2 -582 2732 2360 2445 77 0 3 chr6 110468452 110468764 -78810790 + AluY SINE Alu 1 311 0 263 312 140 73 chr6 110468764 110468929 -78810625 - L2 LINE L2 -954 2360 2207 335 306 93 42 chr6 110469123 110469230 -78810324 - MIR SINE MIR -16 246 146 2348 101 0 0 chr6 110469230 110469526 -78810028 + AluSg SINE Alu 1 296 -14 335 306 93 42 chr6 110469526 110469634 -78809920 - MIR SINE MIR -116 146 20 434 203 87 7 chr6 110469738 110469876 -78809678 + L1ME4a LINE L1 5968 6116 -5 184 323 192 0 chr6 110472620 110472750 -78806804 - MIR SINE MIR -107 155 1 503 160 20 10 chr6 110474643 110474743 -78804811 + L1MA9 LINE L1 5981 6081 -231 569 155 0 0 chr6 110474750 110474853 -78804701 + L1MA9 LINE L1 6186 6288 -24 21 0 0 0 chr6 110474853 110474874 -78804680 + AT_rich Low_complexity Low_complexity 1 21 0 227 318 30 0 chr6 110475399 110475465 -78804089 - L2 LINE L2 -12 3260 3193 1896 145 10 14 chr6 110475622 110475919 -78803635 + AluSx SINE Alu 6 301 -11 1653 173 55 3 chr6 110477062 110477351 -78802203 + AluJb SINE Alu 1 304 -8 210 185 37 56 chr6 110477496 110477550 -78802004 - L2 LINE L2 -1 3271 3219 183 317 37 0 chr6 110477555 110477637 -78801917 - L2 LINE L2 -32 3281 3197 2271 97 10 6 chr6 110478098 110478409 -78801145 - AluSq SINE Alu -1 312 1 221 346 0 45 chr6 110479418 110479551 -78800003 - MIR SINE MIR -44 218 92 1501 128 15 0 chr6 110486065 110486268 -78793286 + AluSg/x SINE Alu 83 288 -24 25 0 0 0 chr6 110486271 110486296 -78793258 + AT_rich Low_complexity Low_complexity 1 25 0 1776 174 6 19 chr6 110486917 110487228 -78792326 - AluJo SINE Alu -5 307 1 243 61 0 0 chr6 110487729 110487762 -78791792 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 215 246 159 0 chr6 110488122 110488191 -78791363 - MIR SINE MIR -34 228 149 282 275 8 15 chr6 110488951 110488963 -78790591 + (TA)n Simple_repeat Simple_repeat 1 12 -118 1093 93 19 12 chr6 110488963 110489125 -78790429 - L1PA14 LINE L1 -8 6153 5991 282 275 8 15 chr6 110489125 110489243 -78790311 + (TA)n Simple_repeat Simple_repeat 12 130 0 2275 87 0 0 chr6 110489328 110489614 -78789940 - AluY SINE Alu -6 305 20 2071 136 3 3 chr6 110492583 110492877 -78786677 + AluSx SINE Alu 3 296 -16 2403 61 3 3 chr6 110493131 110493427 -78786127 + AluY SINE Alu 1 296 -15 397 338 35 7 chr6 110493540 110493682 -78785872 + MIR3 SINE MIR 54 199 -9 183 246 58 72 chr6 110493988 110494057 -78785497 - L2 LINE L2 -1 3312 3245 332 197 29 13 chr6 110495163 110495262 -78784292 + MER5A DNA MER1_type 6 105 -84 1302 235 78 47 chr6 110496991 110497378 -78782176 - LTR1B-int LTR ERV1 -6513 578 180 1782 213 114 71 chr6 110497560 110498316 -78781238 - LTR1B LTR ERV1 -39 981 1 2238 108 0 0 chr6 110498570 110498865 -78780689 - AluSg SINE Alu -15 295 1 26 0 0 0 chr6 110498871 110498897 -78780657 + AT_rich Low_complexity Low_complexity 1 26 0 61 27 0 0 chr6 110498958 110499033 -78780521 + AT_rich Low_complexity Low_complexity 1 75 0 1819 164 0 3 chr6 110501150 110501436 -78778118 - AluJb SINE Alu -27 285 1 327 227 11 0 chr6 110501591 110501679 -78777875 - L1MC5 LINE L1 -66 7895 7807 21 0 0 0 chr6 110502691 110502712 -78776842 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chr6 110504355 110504403 -78775151 + AT_rich Low_complexity Low_complexity 1 48 0 2412 76 0 0 chr6 110504457 110504758 -78774796 + AluSq SINE Alu 1 301 -12 209 209 0 0 chr6 110505974 110506017 -78773537 + GA-rich Low_complexity Low_complexity 4 46 0 182 323 48 0 chr6 110506206 110506268 -78773286 - L2 LINE L2 -26 3246 3182 391 317 35 7 chr6 110507239 110507381 -78772173 - MIR SINE MIR -113 149 4 183 42 0 0 chr6 110507750 110507774 -78771780 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 282 271 62 10 chr6 110508863 110508959 -78770595 - MIR SINE MIR -89 173 73 654 226 65 35 chr6 110511517 110511716 -78767838 - MER67D LTR ERV1 0 514 310 295 145 0 48 chr6 110511756 110511818 -78767736 - MER67D LTR ERV1 -195 319 261 639 132 0 0 chr6 110511818 110511909 -78767645 + AluSp/q SINE Alu 205 295 -18 1303 157 14 79 chr6 110511916 110512196 -78767358 - MER67D LTR ERV1 -252 262 1 1479 131 43 61 chr6 110512723 110513052 -78766502 + MER33 DNA MER1_type 2 324 0 2237 94 0 3 chr6 110515720 110516034 -78763520 + AluSx SINE Alu 1 313 0 996 214 131 0 chr6 110516277 110516506 -78763048 - MIR SINE MIR -3 259 1 391 284 201 8 chr6 110519610 110519849 -78759705 - L1M4 LINE L1 -2633 3513 3229 515 249 88 42 chr6 110519986 110520271 -78759283 + L1M4 LINE L1 2685 2982 -3164 291 265 55 90 chr6 110521038 110521238 -78758316 + MARNA DNA Mariner 273 465 -121 2091 98 34 7 chr6 110521420 110521716 -78757838 - AluSg SINE Alu -4 306 3 528 279 66 0 chr6 110523070 110523206 -78756348 + MIR SINE MIR 47 191 -71 2196 92 7 0 chr6 110523660 110523952 -78755602 - AluY SINE Alu -17 294 1 1799 168 30 0 chr6 110524377 110524680 -78754874 + AluJo SINE Alu 1 312 0 228 200 282 0 chr6 110524797 110524882 -78754672 - MIR SINE MIR -28 234 126 378 173 141 135 chr6 110524906 110525091 -78754463 + MIR SINE MIR 67 252 -10 266 309 29 58 chr6 110525959 110526098 -78753456 + MIR SINE MIR 52 186 -76 25 31 0 0 chr6 110528289 110528321 -78751233 + AT_rich Low_complexity Low_complexity 1 32 0 2267 35 29 67 chr6 110529936 110530249 -78749305 + AluY SINE Alu 11 311 0 1136 173 107 5 chr6 110530387 110530584 -78748970 + MER8 DNA MER2_type 23 239 0 414 69 0 0 chr6 110531145 110531203 -78748351 + (CA)n Simple_repeat Simple_repeat 1 58 0 371 322 94 0 chr6 110531767 110531916 -78747638 - MIR SINE MIR -56 206 44 231 88 0 0 chr6 110533093 110533127 -78746427 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 6688 131 39 15 chr6 110534132 110535333 -78744221 + Tigger3b DNA MER2_type 2 1231 0 535 297 124 23 chr6 110535477 110535824 -78743730 + MARNA DNA Mariner 194 575 -11 21 71 0 0 chr6 110535893 110535935 -78743619 + AT_rich Low_complexity Low_complexity 1 42 0 1968 175 0 20 chr6 110537286 110537641 -78741913 + MER7A DNA MER2_type 1 346 0 1811 143 10 29 chr6 110538955 110539262 -78740292 - AluJo SINE Alu -11 301 1 3891 204 42 20 chr6 110539269 110539485 -78740069 - L1MB7 LINE L1 0 6184 5974 2255 110 3 0 chr6 110539485 110539786 -78739768 - AluSx SINE Alu -5 307 6 3891 204 42 20 chr6 110539786 110541084 -78738470 - L1MB7 LINE L1 -210 5974 4646 713 265 28 19 chr6 110541101 110541418 -78738136 - L1M4b LINE L1 -3803 3154 2874 22745 76 15 10 chr6 110541441 110545418 -78734136 - L1PA7 LINE L1 -8 6146 2153 322 276 92 55 chr6 110545419 110545691 -78733863 - L1M4b LINE L1 -4292 2846 2565 1572 157 128 3 chr6 110545722 110546041 -78733513 + MER46B DNA MER2_type 2 235 -1 180 0 0 0 chr6 110546069 110546089 -78733465 + (T)n Simple_repeat Simple_repeat 1 20 0 2288 256 108 32 chr6 110546282 110547581 -78731973 - L1M4b LINE L1 -4543 2416 919 314 136 0 0 chr6 110547582 110547626 -78731928 - Alu SINE Alu -258 44 1 300 306 0 0 chr6 110548916 110548988 -78730566 + L2 LINE L2 3201 3272 0 265 261 92 15 chr6 110549223 110549288 -78730266 + L2 LINE L2 3216 3285 -28 194 319 62 31 chr6 110549268 110549428 -78730126 - L2 LINE L2 -12 3301 3137 * 1955 142 0 7 chr6 110550743 110551039 -78728515 - AluSx SINE Alu -18 294 1 439 296 59 0 chr6 110552067 110552236 -78727318 - MIR SINE MIR -3 259 81 381 320 153 47 chr6 110553148 110553769 -78725785 + L2 LINE L2 2155 2841 -473 1345 179 0 4 chr6 110554610 110554845 -78724709 + MER46A DNA MER2_type 3 236 0 1365 135 17 17 chr6 110556111 110556348 -78723206 + Tigger7 DNA MER2_type 2255 2491 0 26 74 0 0 chr6 110556605 110556659 -78722895 + AT_rich Low_complexity Low_complexity 1 54 0 1743 196 3 0 chr6 110556845 110557156 -78722398 + AluSx SINE Alu 1 312 0 2325 78 10 10 chr6 110560091 110560397 -78719157 + AluSc SINE Alu 1 306 -3 5767 174 72 16 chr6 110561128 110562338 -78717216 - Charlie1 DNA MER1_type -5 2756 1479 2632 190 81 4 chr6 110562542 110563064 -78716490 + MER68 LTR ERV1 1 562 0 25 0 0 0 chr6 110564047 110564072 -78715482 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr6 110564927 110564955 -78714599 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr6 110566168 110566191 -78713363 + AT_rich Low_complexity Low_complexity 1 23 0 2421 79 0 0 chr6 110566217 110566521 -78713033 - AluY SINE Alu -7 304 1 7251 261 109 22 chr6 110568793 110571466 -78708088 + L2 LINE L2 387 3312 -1 27 29 0 0 chr6 110571878 110571912 -78707642 + AT_rich Low_complexity Low_complexity 1 34 0 495 254 105 48 chr6 110574501 110574729 -78704825 - MIR SINE MIR -10 252 12 1782 131 8 8 chr6 110574825 110575084 -78704470 + AluSx SINE Alu 28 286 -26 36 0 0 0 chr6 110575084 110575120 -78704434 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 48 chr6 110575381 110575398 -78704156 + AT_rich Low_complexity Low_complexity 1 17 -23 2020 129 33 3 chr6 110575398 110575700 -78703854 + AluSx SINE Alu 1 311 -1 27 0 0 48 chr6 110575700 110575724 -78703830 + AT_rich Low_complexity Low_complexity 17 40 0 21 0 0 0 chr6 110576006 110576027 -78703527 + AT_rich Low_complexity Low_complexity 1 21 0 481 279 162 5 chr6 110576696 110576893 -78702661 - MIR SINE MIR -3 259 32 216 357 21 36 chr6 110576876 110577016 -78702538 + MIR SINE MIR 79 216 -46 * 462 79 0 0 chr6 110578285 110578348 -78701206 + (TGGA)n Simple_repeat Simple_repeat 3 65 0 215 188 198 52 chr6 110578506 110578602 -78700952 + MIR SINE MIR 79 188 -74 826 243 105 5 chr6 110578906 110579116 -78700438 - MIR SINE MIR -30 232 2 2416 46 0 3 chr6 110579864 110580181 -78699373 - AluY SINE Alu 0 316 1 2092 116 0 0 chr6 110580184 110580476 -78699078 - AluSc SINE Alu -17 292 1 277 188 248 10 chr6 110580550 110580651 -78698903 + MIR SINE MIR 124 248 -14 1032 288 87 23 chr6 110581019 110581555 -78697999 - L2 LINE L2 -51 3262 2695 236 374 28 39 chr6 110581792 110581974 -78697580 - L2 LINE L2 -541 2773 2594 204 228 11 54 chr6 110582934 110583026 -78696528 + (CATATA)n Simple_repeat Simple_repeat 6 93 0 1383 227 123 101 chr6 110584090 110584644 -78694910 + MLT1G LTR MaLR 5 570 -20 21 0 0 0 chr6 110585417 110585438 -78694116 + AT_rich Low_complexity Low_complexity 1 21 0 291 294 176 8 chr6 110588699 110588818 -78690736 - MIR SINE MIR -93 169 31 24 0 0 0 chr6 110589415 110589439 -78690115 + AT_rich Low_complexity Low_complexity 1 24 0 410 145 0 0 chr6 110590630 110590692 -78688862 + AluJ/FLAM SINE Alu 1 62 -250 9545 171 18 22 chr6 110790693 110791424 -78488130 + L1PA13 LINE L1 1783 2516 -4281 1576 158 0 15 chr6 110791424 110791684 -78487870 - AluJb SINE Alu -19 293 38 9545 171 18 22 chr6 110791684 110793322 -78486232 + L1PA13 LINE L1 2516 4143 -2654 10254 58 89 5 chr6 110793426 110794895 -78484659 - L1P LINE L1 -4533 1613 21 242 93 0 23 chr6 110794917 110794960 -78484594 + (CTTTG)n Simple_repeat Simple_repeat 3 44 0 1389 140 0 18 chr6 110795975 110796203 -78483351 - AluY SINE Alu -5 306 83 236 338 132 7 chr6 110796554 110796690 -78482864 + MIR3 SINE MIR 43 195 -13 1160 160 32 32 chr6 110798248 110798467 -78481087 - MER20 DNA MER1_type 0 219 1 2063 84 58 4 chr6 110798723 110798997 -78480557 + AluSg SINE Alu 1 289 -21 910 190 6 0 chr6 110798997 110799155 -78480399 + AluJb SINE Alu 134 292 -20 1372 182 9 42 chr6 110799655 110799985 -78479569 - L1 LINE L1 -3626 2520 2202 * 3925 256 108 24 chr6 110799973 110800868 -78478686 - HAL1 LINE L1 -585 1922 1103 6925 64 0 5 chr6 110800868 110801807 -78477747 - L1PA7 LINE L1 0 6154 5217 3925 256 108 24 chr6 110801807 110802679 -78476875 - HAL1 LINE L1 -1404 1103 8 355 250 0 12 chr6 110803407 110803487 -78476067 + LTR16C LTR ERVL 411 489 -2 1817 168 7 0 chr6 110804641 110804926 -78474628 - AluJo SINE Alu -17 295 9 464 265 152 60 chr6 110805268 110805795 -78473759 + MLT1H1 LTR MaLR 3 583 -12 190 306 180 0 chr6 110805808 110805919 -78473635 - MIR SINE MIR -104 158 28 255 339 35 0 chr6 110806430 110806545 -78473009 - L1M4 LINE L1 -2329 3817 3699 23 33 0 0 chr6 110806801 110806831 -78472723 + AT_rich Low_complexity Low_complexity 1 30 0 2143 128 0 0 chr6 110807561 110807858 -78471696 + AluSx SINE Alu 1 297 -15 2127 191 103 15 chr6 110807886 110808351 -78471203 - MLT2B3 LTR ERVL -46 508 3 645 69 0 0 chr6 110808506 110808593 -78470961 + (GAA)n Simple_repeat Simple_repeat 2 88 0 207 0 0 0 chr6 110808593 110808616 -78470938 + (AGGGGG)n Simple_repeat Simple_repeat 3 25 0 5813 119 15 0 chr6 110808716 110810015 -78469539 + L1PA13 LINE L1 4848 6159 -4 2087 235 44 51 chr6 110810015 110810504 -78469050 + L1M4 LINE L1 2275 2755 -3391 2253 192 29 5 chr6 110810504 110810920 -78468634 + MSTB LTR MaLR 1 426 0 2087 235 44 51 chr6 110810920 110811405 -78468149 + L1M4 LINE L1 2755 3242 -2904 7185 51 2 3 chr6 110811573 110812560 -78466994 + L1PA5 LINE L1 5168 6154 0 320 206 109 11 chr6 110812636 110812728 -78466826 - MER5C DNA MER1_type 0 324 224 884 309 62 46 chr6 110812778 110813211 -78466343 + L2 LINE L2 2809 3248 -65 400 326 106 38 chr6 110813295 110813718 -78465836 - L2 LINE L2 -1069 2245 1794 1906 176 14 14 chr6 110813731 110814078 -78465476 + MER7A DNA MER2_type 1 345 -1 463 316 55 54 chr6 110814916 110815139 -78464415 + MIR SINE MIR 20 247 -15 1417 192 90 15 chr6 110816309 110816537 -78463017 - MLT1A1 LTR MaLR -6 359 97 1649 171 57 38 chr6 110816537 110816905 -78462649 - THE1C LTR MaLR 0 375 1 1417 192 90 15 chr6 110816905 110817010 -78462544 - MLT1A1 LTR MaLR -268 97 1 213 381 110 9 chr6 110817110 110817328 -78462226 - L2 LINE L2 -576 2738 2499 814 200 0 0 chr6 110817737 110817877 -78461677 + MLT2D LTR ERVL 184 323 -91 195 228 22 87 chr6 110818175 110818267 -78461287 - L2 LINE L2 -345 2968 2883 261 345 34 0 chr6 110818441 110818560 -78460994 - L2 LINE L2 -215 3057 2935 513 214 61 0 chr6 110818671 110818802 -78460752 + MER50 LTR ERV1 24 162 -572 225 188 73 42 chr6 110818905 110819001 -78460553 - LTR50 LTR ERVL -194 601 503 244 200 217 9 chr6 110819167 110819282 -78460272 - LTR50 LTR ERVL -648 147 9 229 246 33 41 chr6 110819963 110820085 -78459469 + L1ME4a LINE L1 5956 6076 -45 200 284 137 29 chr6 110820150 110820252 -78459302 - MIR SINE MIR -110 152 40 242 363 119 37 chr6 110821656 110821951 -78457603 - L2 LINE L2 -5 3267 2949 3508 97 45 11 chr6 110822165 110822701 -78456853 + L1PA13 LINE L1 5610 6163 0 22 0 0 0 chr6 110822701 110822723 -78456831 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 110823052 110823082 -78456472 + AT_rich Low_complexity Low_complexity 1 30 0 287 241 179 9 chr6 110824031 110824143 -78455411 - MIR SINE MIR -14 248 118 1728 94 0 30 chr6 110824698 110824931 -78454623 + AluSg SINE Alu 59 284 -26 3243 172 5 2 chr6 110824960 110825587 -78453967 + L1MA6 LINE L1 4643 5271 -875 1217 180 34 26 chr6 110825634 110825867 -78453687 + AluJo SINE Alu 71 305 -7 1492 154 9 96 chr6 110825868 110825957 -78453597 + L1MA6 LINE L1 5285 5380 -803 1636 190 38 7 chr6 110825957 110826247 -78453307 + AluJb SINE Alu 1 299 -13 1492 154 9 96 chr6 110826247 110826719 -78452835 + L1MA6 LINE L1 5380 5769 -414 2809 150 6 11 chr6 110826866 110827386 -78452168 + L1MA6 LINE L1 5784 6300 0 14944 168 32 8 chr6 110828155 110830939 -78448615 + L1MA1 LINE L1 22 2871 -4694 1796 161 52 35 chr6 110830939 110831306 -78448248 - THE1C LTR MaLR 0 375 3 6842 119 47 19 chr6 110831308 110832430 -78447124 - THE1C-int LTR MaLR 0 1580 427 1608 94 0 0 chr6 110832435 110832670 -78446884 - THE1C-int LTR MaLR -1342 238 4 1828 141 62 49 chr6 110832673 110833043 -78446511 - THE1C LTR MaLR 0 375 1 14592 153 26 27 chr6 110833043 110833380 -78446174 + L1MA1 LINE L1 2867 3203 -4518 5648 124 20 1 chr6 110833380 110834706 -78444848 + L1PA14 LINE L1 4807 6152 -9 14592 153 26 27 chr6 110834706 110838985 -78440569 + L1MA1 LINE L1 3203 7478 -243 2261 109 23 0 chr6 110838985 110839287 -78440267 + AluSq SINE Alu 1 309 -4 14592 153 26 27 chr6 110839287 110839531 -78440023 + L1MA1 LINE L1 7478 7721 0 24 53 0 0 chr6 110839867 110839905 -78439649 + AT_rich Low_complexity Low_complexity 1 38 0 530 75 0 0 chr6 110839951 110840031 -78439523 + L1PA15 LINE L1 6086 6165 0 21 0 0 0 chr6 110840276 110840297 -78439257 + AT_rich Low_complexity Low_complexity 1 21 0 1617 201 21 3 chr6 110840549 110840677 -78438877 + AluJb SINE Alu 1 125 -187 183 42 0 0 chr6 110840677 110840701 -78438853 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1617 201 21 3 chr6 110840701 110840861 -78438693 + AluJb SINE Alu 125 294 -18 388 274 35 9 chr6 110840880 110840993 -78438561 + MIR SINE MIR 134 249 -13 311 335 123 12 chr6 110841350 110841520 -78438034 - MIR3 SINE MIR -1 207 19 970 331 84 25 chr6 110842583 110843262 -78436292 + L2 LINE L2 303 1021 -2293 2230 107 0 7 chr6 110843450 110843750 -78435804 + AluSx SINE Alu 1 298 -14 1353 220 45 53 chr6 110843763 110844014 -78435540 + L1MCc LINE L1 17 264 -6159 1750 177 17 3 chr6 110844014 110844314 -78435240 + AluJb SINE Alu 1 304 -8 1353 220 45 53 chr6 110844314 110844534 -78435020 + L1MCc LINE L1 264 484 -5939 7238 161 71 17 chr6 110844591 110846323 -78433231 + L1MCc LINE L1 1328 3155 -3786 13611 90 10 11 chr6 110846323 110852313 -78427241 - L1PA6 LINE L1 0 6154 11 4810 238 36 13 chr6 110852333 110853933 -78425621 + L1MCc LINE L1 3143 4778 -2163 820 248 28 14 chr6 110853934 110854148 -78425406 + AluJo SINE Alu 88 304 -8 4984 200 35 22 chr6 110854149 110854420 -78425134 + L1MB2 LINE L1 4780 5046 -1920 324 0 0 0 chr6 110854420 110854456 -78425098 + (CA)n Simple_repeat Simple_repeat 1 36 0 4984 200 35 22 chr6 110854456 110854585 -78424969 + L1MB2 LINE L1 5046 5172 -1794 2097 158 0 0 chr6 110854585 110854889 -78424665 + AluSx SINE Alu 1 304 -8 4984 200 35 22 chr6 110854889 110855738 -78423816 + L1MB2 LINE L1 5172 6009 -957 2233 114 3 0 chr6 110855738 110856037 -78423517 + AluSp SINE Alu 1 300 -13 4984 200 35 22 chr6 110856037 110856951 -78422603 + L1MB2 LINE L1 6009 6963 -3 365 306 68 15 chr6 110856952 110857056 -78422498 + L1ME1 LINE L1 1285 1382 -5014 387 0 0 0 chr6 110857056 110857099 -78422455 + (CA)n Simple_repeat Simple_repeat 1 43 0 365 306 68 15 chr6 110857099 110857331 -78422223 + L1ME1 LINE L1 1382 1639 -4757 * 2387 213 25 57 chr6 110857330 110857931 -78421623 + L1M1 LINE L1 14 595 -6970 * 7550 207 14 13 chr6 110857929 110859335 -78420219 - L1 LINE L1 -2122 5443 4033 2298 128 0 0 chr6 110859335 110859647 -78419907 - AluSq SINE Alu -1 312 1 7550 207 14 13 chr6 110859647 110860049 -78419505 - L1 LINE L1 -3532 4033 3633 6263 51 12 2 chr6 110860054 110860874 -78418680 - L1PA6 LINE L1 0 6154 5327 21495 125 37 13 chr6 110860875 110861771 -78417783 - L1 LINE L1 -3930 3635 2763 7215 38 2 0 chr6 110861771 110862969 -78416585 - L1PA4 LINE L1 0 6155 4944 21495 125 37 13 chr6 110862969 110865604 -78413950 - L1 LINE L1 -4802 2763 17 21 0 0 0 chr6 110865609 110865630 -78413924 + AT_rich Low_complexity Low_complexity 1 21 0 682 144 64 24 chr6 110865655 110865780 -78413774 + FLAM_C SINE Alu 2 131 -2 1264 228 131 12 chr6 110865780 110866354 -78413200 + L1ME1 LINE L1 1849 2490 -3906 4793 237 55 18 chr6 110866365 110866683 -78412871 + L1ME1 LINE L1 3816 4121 -2114 2314 112 7 0 chr6 110866683 110866988 -78412566 - AluSg SINE Alu -3 307 1 4793 237 55 18 chr6 110866988 110868995 -78410559 + L1ME1 LINE L1 4121 6230 -5 237 191 32 0 chr6 110869174 110869237 -78410317 + L1M4 LINE L1 5193 5257 -889 196 154 39 0 chr6 110869244 110869296 -78410258 + (TA)n Simple_repeat Simple_repeat 2 55 0 265 345 127 28 chr6 110869896 110870038 -78409516 + MER91A DNA MER1_type 4 159 -37 2095 101 10 19 chr6 110870099 110870439 -78409115 - AluSq SINE Alu 0 313 1 765 243 103 5 chr6 110871313 110871527 -78408027 + MIR SINE MIR 12 246 -16 231 36 0 0 chr6 110871587 110871615 -78407939 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 571 235 63 59 chr6 110872279 110872517 -78407037 - MLT1L LTR MaLR -181 434 196 232 180 40 0 chr6 110872577 110872627 -78406927 - MLT1L LTR MaLR -563 52 1 383 245 0 20 chr6 110873302 110873400 -78406154 + L1MC5 LINE L1 6762 6857 -1104 1196 137 11 95 chr6 110873403 110873688 -78405866 - MLT1B LTR MaLR -129 261 1 392 312 144 19 chr6 110875255 110875470 -78404084 + MIR SINE MIR 8 249 -13 407 248 35 33 chr6 110876255 110876408 -78403146 + L1ME3A LINE L1 5720 5876 -294 431 333 106 26 chr6 110876563 110876911 -78402643 + L1MC4 LINE L1 7615 7990 -52 497 333 7 20 chr6 110877140 110877290 -78402264 + L2 LINE L2 3121 3268 -4 39351 61 3 2 chr6 110877505 110883641 -78395913 + L1PA5 LINE L1 12 6151 -3 1972 179 0 3 chr6 110884490 110884802 -78394752 - AluSx SINE Alu -1 311 1 2255 100 10 3 chr6 110885017 110885317 -78394237 - AluSc SINE Alu -7 302 1 641 224 8 0 chr6 110886866 110886991 -78392563 + FLAM_A SINE Alu 1 126 -7 264 328 8 67 chr6 110889146 110889265 -78390289 + L2 LINE L2 3118 3229 -43 3296 136 23 4 chr6 110889396 110889917 -78389637 + LTR26B LTR ERV1 1 531 0 581 345 41 59 chr6 110890245 110890584 -78388970 + L2 LINE L2 2923 3255 -17 684 255 6 0 chr6 110891518 110891679 -78387875 + MER103 DNA DNA 2 163 -3 2066 106 35 0 chr6 110892588 110892872 -78386682 - AluSx SINE Alu -18 294 1 2121 141 7 0 chr6 110893218 110893524 -78386030 + AluSx SINE Alu 1 308 -4 365 267 19 9 chr6 110894738 110894843 -78384711 + L1MC5 LINE L1 7806 7911 -50 215 137 59 0 chr6 110895336 110895387 -78384167 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 26359 51 1 1 chr6 110896033 110899286 -78380268 - L1PA5 LINE L1 -1605 4541 1287 7029 51 3 0 chr6 110899287 110900859 -78378695 + L1PA5 LINE L1 4529 6106 -48 22 0 0 0 chr6 110901121 110901143 -78378411 + AT_rich Low_complexity Low_complexity 1 22 0 189 231 0 0 chr6 110901365 110901404 -78378150 - MIR SINE MIR -84 178 140 373 386 88 16 chr6 110901501 110901876 -78377678 - L2 LINE L2 -289 3024 2621 876 212 26 40 chr6 110901895 110901989 -78377565 - L1MA9 LINE L1 -38 6274 6180 2804 153 19 0 chr6 110901989 110902408 -78377146 - MSTA LTR MaLR 0 428 2 876 212 26 40 chr6 110902408 110902539 -78377015 - L1MA9 LINE L1 -132 6180 6052 258 32 0 0 chr6 110903367 110903398 -78376156 + (CCCCCT)n Simple_repeat Simple_repeat 2 32 0 7422 41 9 35 chr6 110903403 110904909 -78374645 + SVA Other Other 32 1380 -6 22 0 0 0 chr6 110904918 110904940 -78374614 + AT_rich Low_complexity Low_complexity 1 22 0 2036 99 4 0 chr6 110905022 110905284 -78374270 + AluSp SINE Alu 1 263 -50 435 260 193 17 chr6 110906595 110906776 -78372778 - L3 LINE CR1 -5 1572 1360 1379 164 9 14 chr6 110907509 110907728 -78371826 - MER20 DNA MER1_type -1 218 1 434 139 28 0 chr6 110908934 110909006 -78370548 + Charlie5 DNA MER1_type 10 83 -2529 188 83 0 28 chr6 110909006 110909042 -78370512 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 2466 136 8 19 chr6 110909051 110909419 -78370135 + THE1B LTR MaLR 1 364 0 1796 167 17 6 chr6 110909420 110909779 -78369775 + Charlie5 DNA MER1_type 2234 2596 -16 5142 140 51 6 chr6 110910009 110910752 -78368802 - L1MA8 LINE L1 -26 6265 5474 2209 140 3 0 chr6 110910752 110911060 -78368494 - AluSx SINE Alu -3 309 1 5142 140 51 6 chr6 110911060 110911195 -78368359 - L1MA8 LINE L1 -817 5474 5347 489 279 0 48 chr6 110911279 110911426 -78368128 - MIR SINE MIR -41 221 82 873 65 19 0 chr6 110912098 110912205 -78367349 + HY1 scRNA scRNA 2 110 -2 21 36 0 0 chr6 110913735 110913763 -78365791 + AT_rich Low_complexity Low_complexity 1 28 0 572 159 9 26 chr6 110914260 110914373 -78365181 + MSTA LTR MaLR 1 111 -317 48 32 0 0 chr6 110915087 110915149 -78364405 + AT_rich Low_complexity Low_complexity 1 62 0 446 243 32 96 chr6 110915304 110915522 -78364032 - L1MC4 LINE L1 -131 7911 7708 2656 106 28 8 chr6 110915524 110915881 -78363673 + THE1B LTR MaLR 1 364 0 9580 89 15 150 chr6 110915881 110917241 -78362313 + THE1B-int LTR MaLR 1 1244 -336 1324 96 0 0 chr6 110917241 110917408 -78362146 + AluSp SINE Alu 143 309 -4 9580 89 15 150 chr6 110917408 110917706 -78361848 + THE1B-int LTR MaLR 1244 1580 0 2536 110 28 28 chr6 110917706 110918070 -78361484 + THE1B LTR MaLR 1 364 0 1037 269 45 11 chr6 110918083 110918448 -78361106 - L1MC4 LINE L1 -184 7811 7348 387 347 116 40 chr6 110918663 110919309 -78360245 + L2 LINE L2 208 902 -2412 872 309 107 34 chr6 110919544 110920407 -78359147 + L2 LINE L2 2367 3309 -4 472 171 9 36 chr6 110920450 110920561 -78358993 + MIR SINE MIR 124 231 -31 199 387 65 16 chr6 110920663 110920787 -78358767 - L2 LINE L2 -5 3267 3138 228 333 0 24 chr6 110921386 110921470 -78358084 + L2 LINE L2 2619 2700 -614 23 33 0 0 chr6 110921653 110921683 -78357871 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 110921752 110921773 -78357781 + AT_rich Low_complexity Low_complexity 1 21 0 420 83 0 56 chr6 110921775 110921847 -78357707 - Alu SINE Alu 0 312 245 1072 171 51 167 chr6 110923697 110924307 -78355247 + L1MC5 LINE L1 7135 7673 -288 288 0 0 0 chr6 110924632 110924664 -78354890 + (A)n Simple_repeat Simple_repeat 1 32 0 303 240 98 44 chr6 110925110 110925293 -78354261 + L1MC4 LINE L1 7712 7904 -138 252 232 51 7 chr6 110925748 110925886 -78353668 + (TA)n Simple_repeat Simple_repeat 2 145 0 7561 51 41 8 chr6 110926334 110927989 -78351565 - L1PA7 LINE L1 -3 6151 4465 22 35 0 0 chr6 110928225 110928254 -78351300 + AT_rich Low_complexity Low_complexity 1 29 0 2102 141 3 0 chr6 110928313 110928611 -78350943 - AluSx SINE Alu -13 299 1 319 321 98 21 chr6 110929071 110929264 -78350290 + L2 LINE L2 2460 2667 -647 699 287 5 28 chr6 110929401 110929617 -78349937 - MIR SINE MIR -49 213 3 699 259 40 116 chr6 110929632 110930012 -78349542 + L2 LINE L2 2836 3178 -94 1473 171 96 0 chr6 110930012 110930293 -78349261 - AluJo SINE Alu -4 308 1 699 259 40 116 chr6 110930293 110930360 -78349194 + L2 LINE L2 3178 3249 -23 730 242 69 58 chr6 110931589 110931949 -78347605 + L1MC4a LINE L1 5645 6008 -1800 280 279 13 0 chr6 110931961 110932040 -78347514 - MER69 DNA AcHobo 0 2526 2447 2799 69 29 3 chr6 110932050 110932396 -78347158 - THE1A LTR MaLR 0 355 1 785 157 0 30 chr6 110932591 110932725 -78346829 - FLAM_C SINE Alu 0 133 4 695 233 0 0 chr6 110933464 110933597 -78345957 + FLAM_A SINE Alu 1 133 0 632 217 106 21 chr6 110936287 110936476 -78343078 - MIR SINE MIR -18 244 40 1102 174 12 0 chr6 110937066 110937233 -78342321 - FAM SINE Alu -6 169 1 21 0 0 0 chr6 110937233 110937254 -78342300 + AT_rich Low_complexity Low_complexity 1 21 0 236 185 0 19 chr6 110940113 110940167 -78339387 + (CCG)n Simple_repeat Simple_repeat 1 53 0 180 0 0 0 chr6 110940676 110940696 -78338858 + (CGG)n Simple_repeat Simple_repeat 2 21 0 197 29 0 86 chr6 110940721 110940756 -78338798 + (TGG)n Simple_repeat Simple_repeat 1 32 0 24 32 0 0 chr6 110940789 110940820 -78338734 + GC_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr6 110942260 110942299 -78337255 + AT_rich Low_complexity Low_complexity 1 39 0 1973 144 7 3 chr6 110944530 110944836 -78334718 - AluJb SINE Alu 0 312 6 534 247 83 0 chr6 110945309 110945462 -78334092 + MIR SINE MIR 21 192 -65 181 333 81 11 chr6 110949133 110949220 -78330334 + MIR SINE MIR 58 150 -112 1114 140 103 111 chr6 110952395 110952666 -78326888 - AluJb SINE Alu -43 269 1 234 254 45 0 chr6 110952929 110952996 -78326558 + L1MC4a LINE L1 6080 6149 -1659 801 171 49 0 chr6 110953019 110953142 -78326412 + FLAM_C SINE Alu 2 130 -13 4001 163 77 41 chr6 110954059 110954512 -78325042 - L1MB8 LINE L1 0 6178 5743 204 97 0 0 chr6 110954512 110954543 -78325011 + (TG)n Simple_repeat Simple_repeat 2 32 0 4001 163 77 41 chr6 110954543 110954574 -78324980 - L1MB8 LINE L1 -435 5743 5715 2105 140 0 10 chr6 110954574 110954888 -78324666 - AluSx SINE Alu -1 311 1 4001 163 77 41 chr6 110954888 110955263 -78324291 - L1MB8 LINE L1 -463 5715 5287 348 322 92 7 chr6 110955316 110955468 -78324086 - MIR SINE MIR -74 188 24 675 274 37 0 chr6 110955550 110955714 -78323840 + MIR SINE MIR 1 170 -92 1334 217 23 84 chr6 110955919 110956393 -78323161 + L1MC5 LINE L1 7076 7520 -441 761 215 134 0 chr6 110956396 110956568 -78322986 + MLT1F1 LTR MaLR 1 195 -372 981 161 58 112 chr6 110956570 110956775 -78322779 + L1MC5 LINE L1 7618 7800 -161 976 164 159 0 chr6 110956775 110956964 -78322590 - MER20 DNA MER1_type 0 219 1 981 161 58 112 chr6 110956964 110957088 -78322466 + L1MC5 LINE L1 7800 7929 -32 1857 164 25 82 chr6 110957683 110958085 -78321469 + MLT1B LTR MaLR 12 390 0 666 344 90 19 chr6 110958087 110958552 -78321002 - LTR67 LTR ERVL -22 535 38 976 240 132 59 chr6 110958611 110959019 -78320535 + MLT1J LTR MaLR 22 459 -52 2174 172 14 56 chr6 110959392 110959554 -78320000 - MSTD LTR MaLR 0 396 229 2218 96 13 10 chr6 110959554 110959855 -78319699 + AluSp SINE Alu 1 302 -11 2174 172 14 56 chr6 110959855 110960105 -78319449 - MSTD LTR MaLR -167 229 1 30 27 0 0 chr6 110961075 110961112 -78318442 + AT_rich Low_complexity Low_complexity 1 37 0 452 260 94 23 chr6 110961314 110961712 -78317842 + MLT1H LTR MaLR 26 534 -8 971 269 65 47 chr6 110961895 110962282 -78317272 + MLT1L LTR MaLR 25 418 -197 579 168 106 0 chr6 110964238 110964351 -78315203 - FLAM_A SINE Alu -5 128 4 237 254 16 16 chr6 110965826 110965889 -78313665 + L2 LINE L2 3235 3297 -16 211 271 0 0 chr6 110965892 110965940 -78313614 - L2 LINE L2 -2 3311 3264 1396 134 0 9 chr6 110966008 110966225 -78313329 - MSTA LTR MaLR -11 417 203 553 196 122 9 chr6 110966498 110966605 -78312949 + FLAM_A SINE Alu 1 119 -14 5719 139 99 20 chr6 110967647 110968623 -78310931 + Tigger1 DNA MER2_type 22 1074 -1344 3246 125 12 57 chr6 110968621 110968675 -78310879 + Tigger1 DNA MER2_type 1537 1592 -826 * 2044 146 3 0 chr6 110968675 110968970 -78310584 + AluJb SINE Alu 1 296 -16 3246 125 12 57 chr6 110968970 110969475 -78310079 + Tigger1 DNA MER2_type 1592 2071 -347 410 52 0 17 chr6 110969475 110969533 -78310021 + (TTTC)n Simple_repeat Simple_repeat 1 57 0 1967 99 16 160 chr6 110969710 110969889 -78309665 + Tigger1 DNA MER2_type 2053 2256 -162 2025 143 0 3 chr6 110969889 110970176 -78309378 + AluSx SINE Alu 1 286 -26 1967 99 16 160 chr6 110970176 110970217 -78309337 + Tigger1 DNA MER2_type 2256 2301 -117 2292 107 0 0 chr6 110970217 110970517 -78309037 - AluSc SINE Alu -4 305 6 1967 99 16 160 chr6 110970517 110970719 -78308835 + Tigger1 DNA MER2_type 2301 2415 -3 513 254 0 8 chr6 110970725 110970851 -78308703 + MIR SINE MIR 81 205 -57 2207 78 0 14 chr6 110971431 110971753 -78307801 - AluSc SINE Alu 0 318 1 1042 181 12 0 chr6 110971776 110971936 -78307618 - FRAM SINE Alu -4 162 1 1518 145 8 154 chr6 110971949 110971969 -78307585 - AluJb SINE Alu -2 300 279 207 0 0 0 chr6 110971969 110971992 -78307562 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 1518 145 8 154 chr6 110971992 110972322 -78307232 - AluJb SINE Alu -23 279 1 26 0 0 0 chr6 110972420 110972446 -78307108 + AT_rich Low_complexity Low_complexity 1 26 0 2165 106 7 0 chr6 110972456 110972760 -78306794 + AluSp SINE Alu 1 306 0 260 286 42 42 chr6 110973226 110973345 -78306209 - MLT1L LTR MaLR -88 527 409 1003 175 19 62 chr6 110973389 110973600 -78305954 - MER20 DNA MER1_type -4 215 14 450 174 61 10 chr6 110973678 110973776 -78305778 - MLT1L LTR MaLR -345 270 168 180 0 0 0 chr6 110973850 110973870 -78305684 + (CA)n Simple_repeat Simple_repeat 2 21 0 235 235 71 0 chr6 110973870 110973955 -78305599 - L1MC4 LINE L1 -1337 6705 6615 233 204 0 0 chr6 110973965 110974019 -78305535 - L1MC4 LINE L1 -1340 6702 6649 2005 115 3 49 chr6 110974022 110974327 -78305227 - AluSx SINE Alu -21 291 1 419 183 3 40 chr6 110974336 110974352 -78305202 - L1MD1 LINE L1 0 7985 7970 2116 150 96 10 chr6 110974352 110974746 -78304808 - MSTA LTR MaLR 0 428 1 419 183 3 40 chr6 110974746 110975345 -78304209 - L1MD1 LINE L1 -15 7970 6112 396 220 11 11 chr6 110975345 110975433 -78304121 - MLT1F1 LTR MaLR -443 124 43 513 199 18 70 chr6 110975436 110975595 -78303959 - L1MC3 LINE L1 -684 7101 6950 2250 156 164 45 chr6 110975595 110976057 -78303497 + MLT2B1 LTR ERVL 4 520 0 513 199 18 70 chr6 110976057 110976068 -78303486 - L1MC3 LINE L1 -835 6950 6940 270 279 0 47 chr6 110976203 110976289 -78303265 - MER5B DNA MER1_type -94 84 3 886 139 0 16 chr6 110977019 110977148 -78302406 + FLAM_C SINE Alu 3 129 -4 1438 232 41 46 chr6 110977487 110977901 -78301653 + MLT1D LTR MaLR 1 412 -93 334 111 458 0 chr6 110978767 110978839 -78300715 + MLT1D LTR MaLR 401 505 0 925 236 70 0 chr6 110979445 110979686 -78299868 - MIR SINE MIR 0 262 5 1930 160 75 52 chr6 110979686 110980021 -78299533 + MSTD LTR MaLR 1 348 -48 2762 152 4 22 chr6 110980021 110980474 -78299080 + MER65A LTR ERV1 1 445 0 1930 160 75 52 chr6 110980474 110980525 -78299029 + MSTD LTR MaLR 348 396 0 21 36 0 0 chr6 110980662 110980690 -78298864 + AT_rich Low_complexity Low_complexity 1 28 0 1412 93 33 5 chr6 110980978 110981192 -78298362 + L1MA3 LINE L1 6086 6305 0 322 205 64 0 chr6 110981540 110981618 -78297936 + MER69 DNA AcHobo 1 83 -2443 376 219 95 9 chr6 110981740 110981845 -78297709 + MER69 DNA AcHobo 2380 2493 -33 1722 101 122 66 chr6 110981918 110982206 -78297348 + AluSx SINE Alu 2 305 -7 28 29 0 0 chr6 110982398 110982433 -78297121 + AT_rich Low_complexity Low_complexity 1 35 0 2556 56 0 0 chr6 110982433 110982738 -78296816 - AluY SINE Alu -6 305 1 2255 96 7 0 chr6 110982818 110983120 -78296434 - AluSg SINE Alu -6 304 1 2158 130 0 0 chr6 110983499 110983800 -78295754 - AluSx SINE Alu -8 304 4 202 182 0 0 chr6 110983847 110983880 -78295674 + (TG)n Simple_repeat Simple_repeat 2 34 0 643 14 0 0 chr6 110984335 110984407 -78295147 + AluYa5/8 SINE Alu 228 299 -12 2516 60 0 3 chr6 110984413 110984714 -78294840 + AluSc SINE Alu 1 300 -9 1791 132 30 34 chr6 110984726 110985021 -78294533 + AluSx SINE Alu 1 294 -18 2367 83 0 10 chr6 110985023 110985335 -78294219 + AluSc SINE Alu 1 309 0 294 206 0 0 chr6 110987003 110987066 -78292488 + (TG)n Simple_repeat Simple_repeat 2 64 0 354 117 50 0 chr6 110987585 110987645 -78291909 + HsTC2 DNA Tc2 1 63 -1835 229 211 183 0 chr6 110987643 110987714 -78291840 + HsTC2 DNA Tc2 1815 1898 0 * 266 278 56 28 chr6 110988453 110988561 -78290993 + L1P LINE L1 3581 3691 -2455 337 207 95 62 chr6 110989167 110989346 -78290208 + L1MC3 LINE L1 4544 4728 -1418 266 250 0 0 chr6 110989495 110989555 -78289999 + L1P LINE L1 4952 5011 -1135 323 299 96 37 chr6 110989789 110990000 -78289554 + L1MC3 LINE L1 5273 5470 -2338 2254 116 7 0 chr6 110990000 110990302 -78289252 - AluSx SINE Alu -8 304 1 323 299 96 37 chr6 110990302 110990495 -78289059 + L1MC3 LINE L1 5470 5701 -2107 225 174 290 0 chr6 110990794 110990863 -78288691 + L1MC3 LINE L1 5734 5822 -1986 441 180 29 86 chr6 110991102 110991241 -78288313 - MER104 DNA Tc2 -2 178 48 1768 138 134 0 chr6 110992121 110992382 -78287172 + AluSx SINE Alu 2 297 -5 22 35 0 0 chr6 110992412 110992441 -78287113 + AT_rich Low_complexity Low_complexity 1 29 0 757 272 40 0 chr6 110993256 110993458 -78286096 - MIR SINE MIR -51 211 2 2252 126 0 0 chr6 110994425 110994727 -78284827 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr6 110994772 110994794 -78284760 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr6 110995470 110995508 -78284046 + AT_rich Low_complexity Low_complexity 1 38 0 1040 144 139 5 chr6 110995543 110995751 -78283803 + MER46A DNA MER2_type 1 236 0 309 206 73 0 chr6 110996321 110996389 -78283165 + MIR SINE MIR 155 227 -35 1213 180 149 53 chr6 110996393 110996626 -78282928 - MLT1B LTR MaLR 0 390 110 2120 99 58 3 chr6 110996626 110996920 -78282634 - AluSg SINE Alu 0 310 1 1213 180 149 53 chr6 110996920 110997042 -78282512 - MLT1B LTR MaLR -280 110 1 218 186 0 0 chr6 110997062 110997105 -78282449 + (CAT)n Simple_repeat Simple_repeat 2 44 0 1989 93 63 0 chr6 110997521 110997789 -78281765 - AluSx SINE Alu -27 285 1 427 118 0 29 chr6 110997840 110997908 -78281646 - AluS SINE Alu -247 66 1 999 134 98 0 chr6 110998035 110998229 -78281325 + L1MB2 LINE L1 5835 6047 -124 1700 200 0 20 chr6 110998703 110999008 -78280546 + AluJo SINE Alu 1 299 -13 7369 151 59 16 chr6 110999158 111000591 -78278963 + L1MC3 LINE L1 6205 7698 -87 627 124 0 0 chr6 111000597 111000694 -78278860 - MLT1A2 LTR MaLR 0 374 278 2195 110 10 0 chr6 111001384 111001684 -78277870 - AluSx SINE Alu -9 303 1 21 0 0 0 chr6 111002010 111002031 -78277523 + AT_rich Low_complexity Low_complexity 1 21 0 265 182 223 33 chr6 111002035 111002156 -78277398 - L1ME4a LINE L1 -22 6099 5956 21 0 0 0 chr6 111002522 111002543 -78277011 + AT_rich Low_complexity Low_complexity 1 21 0 436 314 17 11 chr6 111002785 111002960 -78276594 + MER5B DNA MER1_type 3 178 0 458 327 116 10 chr6 111005403 111005602 -78273952 + MIR SINE MIR 34 253 -9 2136 91 45 3 chr6 111005621 111005908 -78273646 - AluSx SINE Alu -9 303 5 238 273 163 17 chr6 111006033 111006205 -78273349 + MER117 DNA MER1_type 1 197 0 373 348 82 37 chr6 111006212 111006540 -78273014 + L2 LINE L2 2174 2516 -798 1026 182 91 0 chr6 111006689 111006887 -78272667 + MER20 DNA MER1_type 2 217 -2 2225 107 10 0 chr6 111008179 111008470 -78271084 + AluSx SINE Alu 1 294 -18 181 200 46 77 chr6 111008547 111008612 -78270942 - MER5B DNA MER1_type -83 95 33 21 0 0 0 chr6 111009453 111009474 -78270080 + AT_rich Low_complexity Low_complexity 1 21 0 1361 211 103 54 chr6 111012435 111012800 -78266754 - L1MC5 LINE L1 -60 7901 7496 1981 139 7 3 chr6 111012800 111013103 -78266451 - AluSx SINE Alu -8 304 1 1361 211 103 54 chr6 111013103 111013309 -78266245 - L1MC5 LINE L1 -465 7496 7302 282 227 45 78 chr6 111013446 111013470 -78266084 - HAL1 LINE L1 -33 2474 2451 1073 147 107 40 chr6 111013470 111013751 -78265803 + MER33 DNA MER1_type 5 309 -2276 2175 103 0 32 chr6 111013751 111014062 -78265492 + AluSq SINE Alu 1 301 -12 1073 147 107 40 chr6 111014062 111014080 -78265474 + MER33 DNA MER1_type 309 324 0 282 227 45 78 chr6 111014080 111014209 -78265345 - HAL1 LINE L1 -56 2451 2326 420 228 197 28 chr6 111014222 111014401 -78265153 - MIR SINE MIR -10 252 45 730 127 36 0 chr6 111014420 111014530 -78265024 + FLAM_C SINE Alu 4 117 -26 291 266 97 59 chr6 111014623 111014943 -78264611 - HAL1 LINE L1 -195 2312 1981 1495 201 48 4 chr6 111015125 111015394 -78264160 - AluJo SINE Alu -31 281 1 600 259 113 70 chr6 111015407 111015519 -78264035 - HAL1 LINE L1 -1472 1035 929 1820 130 121 3 chr6 111015519 111015842 -78263712 + MER46B DNA MER2_type 1 236 0 600 259 113 70 chr6 111015842 111016231 -78263323 - HAL1 LINE L1 -1578 929 512 276 265 24 0 chr6 111016370 111016453 -78263101 - MIR SINE MIR -40 222 138 1920 101 10 47 chr6 111016494 111016639 -78262915 + AluSx SINE Alu 1 131 -181 2432 77 3 0 chr6 111016639 111016937 -78262617 + AluSp SINE Alu 1 299 -14 1920 101 10 47 chr6 111016937 111017089 -78262465 + AluSx SINE Alu 131 287 -25 21 36 0 0 chr6 111017089 111017117 -78262437 + AT_rich Low_complexity Low_complexity 1 28 0 1793 133 75 0 chr6 111017756 111018034 -78261520 + AluJb SINE Alu 1 299 -13 600 113 0 0 chr6 111018079 111018176 -78261378 + AluSg/x SINE Alu 208 304 -6 2401 95 0 7 chr6 111018176 111018482 -78261072 + AluY SINE Alu 1 304 -7 519 60 0 0 chr6 111018484 111018551 -78261003 + (TA)n Simple_repeat Simple_repeat 2 68 0 22 0 0 0 chr6 111018898 111018920 -78260634 + AT_rich Low_complexity Low_complexity 1 22 0 1818 189 0 0 chr6 111018983 111019289 -78260265 + AluJo SINE Alu 1 306 -6 238 272 87 0 chr6 111019291 111019383 -78260171 - L1ME LINE L1 -258 5912 5813 * 267 196 10 82 chr6 111019370 111019467 -78260087 - L1MEd LINE L1 -5105 1826 1737 257 193 23 34 chr6 111019483 111019571 -78259983 - L1MEd LINE L1 -4961 1462 1376 1120 220 89 0 chr6 111019707 111019989 -78259565 + MER58B DNA MER1_type 1 307 -34 330 157 15 10 chr6 111020314 111020397 -78259157 - L1ME2 LINE L1 -100 6064 6017 375 181 0 0 chr6 111020407 111020479 -78259075 + (TA)n Simple_repeat Simple_repeat 1 72 0 685 146 64 114 chr6 111020723 111020875 -78258679 - L1ME2 LINE L1 -2 6162 6023 1590 134 72 34 chr6 111020875 111021166 -78258388 - AluJb SINE Alu 0 312 11 685 146 64 114 chr6 111021166 111021233 -78258321 - L1ME2 LINE L1 -141 6023 5954 2137 108 3 20 chr6 111021240 111021262 -78258292 - AluSc SINE Alu -8 301 280 216 0 0 0 chr6 111021262 111021286 -78258268 + (TG)n Simple_repeat Simple_repeat 1 24 0 2137 108 3 20 chr6 111021286 111021569 -78257985 - AluSc SINE Alu -29 280 1 2337 90 0 0 chr6 111022199 111022488 -78257066 - AluSc SINE Alu -20 289 1 29 28 0 0 chr6 111022856 111022892 -78256662 + AT_rich Low_complexity Low_complexity 1 36 0 409 225 11 11 chr6 111023239 111023328 -78256226 + MER21B LTR ERV1 2 90 -773 2402 241 94 18 chr6 111023363 111024096 -78255458 + MER21B LTR ERV1 21 809 -54 1065 164 6 0 chr6 111024118 111024289 -78255265 + AluJb SINE Alu 136 307 -5 2216 93 21 0 chr6 111024289 111024579 -78254975 + AluSq SINE Alu 1 296 -17 2491 76 0 0 chr6 111024893 111025195 -78254359 - AluSc SINE Alu -7 302 1 1195 203 107 3 chr6 111025220 111025530 -78254024 + MER2 DNA MER2_type 1 342 -2 1746 198 138 13 chr6 111025567 111026098 -78253456 + L1MC4a LINE L1 6922 7518 -290 506 209 98 0 chr6 111026082 111026235 -78253319 + L1MD3 LINE L1 7804 7971 -24 * 22 35 0 0 chr6 111026257 111026286 -78253268 + AT_rich Low_complexity Low_complexity 1 29 0 1910 152 3 25 chr6 111026331 111026647 -78252907 + AluJb SINE Alu 1 309 -3 318 309 88 58 chr6 111026753 111026940 -78252614 + L1MC/D LINE L1 4822 5023 -1123 2407 75 0 0 chr6 111026940 111027234 -78252320 - AluY SINE Alu -17 294 1 318 309 88 58 chr6 111027234 111027341 -78252213 + L1MC/D LINE L1 5023 5125 -1021 734 281 60 22 chr6 111027469 111027975 -78251579 + L1MC/D LINE L1 5275 5799 -716 562 202 9 0 chr6 111028051 111028160 -78251394 - MER119 DNA MER1_type -3 580 471 790 37 47 9 chr6 111028241 111028348 -78251206 - HY1 scRNA scRNA -1 111 1 2350 138 122 10 chr6 111028438 111028940 -78250614 + L1MB4 LINE L1 5623 6180 0 2413 76 0 3 chr6 111029903 111030204 -78249350 + AluSg SINE Alu 1 300 -10 418 343 79 6 chr6 111030239 111030417 -78249137 + MIR SINE MIR 20 210 -52 365 279 56 25 chr6 111030551 111030712 -78248842 + L1MC4a LINE L1 5605 5770 -2038 2334 114 0 0 chr6 111030986 111031284 -78248270 - AluSx SINE Alu -14 298 1 688 153 248 0 chr6 111031307 111031444 -78248110 - AluJb SINE Alu -18 294 124 1651 181 0 14 chr6 111031649 111031942 -78247612 - AluJb SINE Alu -18 294 6 1549 162 70 7 chr6 111031964 111032235 -78247319 - AluJb SINE Alu -20 292 5 1759 151 9 25 chr6 111032277 111032594 -78246960 + AluJo SINE Alu 1 312 0 209 207 35 17 chr6 111032788 111032846 -78246708 + MIR SINE MIR 90 148 -60 334 301 122 84 chr6 111033093 111033379 -78246175 + L1M2 LINE L1 836 1132 -5717 2345 178 40 42 chr6 111033874 111034380 -78245174 - MLT1D LTR MaLR 0 505 1 633 242 102 0 chr6 111034472 111034629 -78244925 + AluJo SINE Alu 120 292 -20 27 0 0 0 chr6 111035039 111035066 -78244488 + AT_rich Low_complexity Low_complexity 1 27 0 2145 93 65 0 chr6 111035424 111035714 -78243840 - AluSx SINE Alu -2 310 2 21 0 0 0 chr6 111035758 111035779 -78243775 + AT_rich Low_complexity Low_complexity 1 21 0 344 315 78 62 chr6 111035994 111036083 -78243471 + L1MC4a LINE L1 5741 5827 -1981 2417 86 0 0 chr6 111036083 111036384 -78243170 + AluSx SINE Alu 1 301 -11 344 315 78 62 chr6 111036384 111036615 -78242939 + L1MC4a LINE L1 5827 6066 -1742 2029 127 9 35 chr6 111036702 111037018 -78242536 + AluSx SINE Alu 1 308 -4 205 281 78 0 chr6 111037824 111037888 -78241666 + L2 LINE L2 3242 3310 -3 2534 42 0 10 chr6 111038368 111038674 -78240880 + AluY SINE Alu 1 303 -8 24 32 0 0 chr6 111038903 111038934 -78240620 + GC_rich Low_complexity Low_complexity 1 31 0 819 245 68 8 chr6 111039439 111039676 -78239878 + MIR SINE MIR 8 258 -4 645 240 52 41 chr6 111039942 111040383 -78239171 + MER68 LTR ERV1 1 562 0 864 166 74 0 chr6 111040392 111040555 -78238999 - L1PB4 LINE L1 -7 6149 5975 234 311 62 28 chr6 111040979 111041156 -78238398 - L2 LINE L2 -1840 1474 1292 225 88 29 0 chr6 111041374 111041408 -78238146 + MLT1I LTR MaLR 84 118 -291 305 290 191 8 chr6 111042086 111042217 -78237337 + MER5A DNA MER1_type 12 166 -23 583 235 102 48 chr6 111042217 111042549 -78237005 + L1MC4 LINE L1 7543 7892 -150 399 145 0 0 chr6 111042551 111042620 -78236934 + (TA)n Simple_repeat Simple_repeat 1 69 0 1783 149 0 17 chr6 111042696 111042985 -78236569 + AluJb SINE Alu 5 288 -24 1803 101 0 13 chr6 111042992 111043230 -78236324 + AluSc SINE Alu 1 235 -74 285 29 0 0 chr6 111043238 111043272 -78236282 + (TAA)n Simple_repeat Simple_repeat 2 35 0 306 209 70 23 chr6 111043272 111043358 -78236196 + L1MC5 LINE L1 7836 7925 -36 1585 198 35 14 chr6 111043653 111043997 -78235557 - MLT1A1 LTR MaLR -11 354 4 28 0 0 0 chr6 111044144 111044172 -78235382 + AT_rich Low_complexity Low_complexity 1 28 0 1012 203 14 22 chr6 111044375 111044597 -78234957 - MER8 DNA MER2_type 0 239 20 302 262 29 19 chr6 111044657 111044760 -78234794 - L1M4 LINE L1 -1467 4679 4576 301 183 75 21 chr6 111044908 111045001 -78234553 - L1MEd LINE L1 -5961 158 61 768 226 23 23 chr6 111045007 111045224 -78234330 + L1MD2 LINE L1 6121 6337 -22 652 200 127 0 chr6 111045331 111045536 -78234018 - L1MD2 LINE L1 -238 6121 5891 418 244 69 15 chr6 111046272 111046403 -78233151 - MLT1L LTR MaLR -58 557 420 236 218 167 0 chr6 111046469 111046547 -78233007 - MLT1L LTR MaLR -370 245 155 1959 128 3 7 chr6 111047224 111047521 -78232033 - AluSx SINE Alu -16 296 1 227 338 0 14 chr6 111047668 111047742 -78231812 - MER5B DNA MER1_type -101 77 5 1973 109 66 0 chr6 111047840 111048114 -78231440 + AluSx SINE Alu 5 296 -16 842 200 32 16 chr6 111048535 111048720 -78230834 - MER5A DNA MER1_type -1 188 1 1919 108 90 0 chr6 111048784 111049061 -78230493 - AluSx SINE Alu -10 302 1 315 146 0 0 chr6 111049398 111049453 -78230101 - L1MC5 LINE L1 -64 7897 7843 761 154 89 93 chr6 111049522 111049736 -78229818 - MER20 DNA MER1_type 0 219 7 425 289 191 58 chr6 111049796 111050005 -78229549 + L2 LINE L2 2450 2630 -684 2159 126 3 0 chr6 111050005 111050306 -78229248 + AluSx SINE Alu 1 302 -10 425 289 191 58 chr6 111050306 111050473 -78229081 + L2 LINE L2 2630 2876 -438 2248 109 0 16 chr6 111050815 111051118 -78228436 + AluSg SINE Alu 1 298 -12 422 302 156 11 chr6 111051200 111051379 -78228175 + MIR SINE MIR 21 225 -37 2676 133 21 7 chr6 111051400 111051822 -78227732 - MSTA LTR MaLR 0 428 1 993 213 109 123 chr6 111051866 111052453 -78227101 - MER21B LTR ERV1 -144 719 141 336 283 0 43 chr6 111052483 111052621 -78226933 - MER77 LTR ERV1 -408 197 66 260 287 110 49 chr6 111052748 111052912 -78226642 - L2 LINE L2 -22 3291 3118 328 318 31 73 chr6 111052957 111053312 -78226242 - L2 LINE L2 -419 2895 2556 237 246 70 0 chr6 111053622 111053679 -78225875 - L2 LINE L2 0 3272 3212 2023 122 14 0 chr6 111054022 111054316 -78225238 + AluSx SINE Alu 1 298 -14 206 310 81 11 chr6 111054332 111054419 -78225135 + MIR SINE MIR 37 129 -79 208 323 75 38 chr6 111054586 111054719 -78224835 - L2 LINE L2 -187 3085 2948 744 159 8 0 chr6 111055379 111055505 -78224049 + FLAM_C SINE Alu 11 137 -6 1362 187 89 0 chr6 111055513 111055829 -78223725 - Charlie1b DNA MER1_type -179 344 1 213 211 77 19 chr6 111055868 111055920 -78223634 + L2 LINE L2 2996 3050 -222 468 302 115 68 chr6 111056208 111056797 -78222757 - L2 LINE L2 0 3272 2672 2112 142 16 16 chr6 111057300 111057673 -78221881 + L1MC1 LINE L1 5944 6316 -17 632 208 0 25 chr6 111058159 111058279 -78221275 + FLAM_C SINE Alu 2 118 -25 760 188 50 11 chr6 111058464 111058645 -78220909 - MER105 DNA DNA -16 188 1 355 227 182 23 chr6 111058819 111058951 -78220603 + MIR SINE MIR 1 153 -109 2231 108 10 0 chr6 111059535 111059832 -78219722 - AluSx SINE Alu -12 300 1 2225 101 0 3 chr6 111060646 111060933 -78218621 + AluSq SINE Alu 1 286 -27 216 0 0 0 chr6 111060933 111060957 -78218597 + (CATA)n Simple_repeat Simple_repeat 2 25 0 2271 108 10 0 chr6 111061119 111061414 -78218140 + AluSx SINE Alu 1 298 -14 2088 129 10 3 chr6 111061653 111061948 -78217606 + AluSx SINE Alu 1 297 -15 249 242 16 0 chr6 111062846 111062908 -78216646 + MIR SINE MIR 85 147 -61 22 0 0 0 chr6 111063290 111063312 -78216242 + AT_rich Low_complexity Low_complexity 1 22 0 293 53 0 0 chr6 111063576 111063614 -78215940 + Alu SINE Alu 2 39 -264 1999 128 0 58 chr6 111063965 111064278 -78215276 + AluSx SINE Alu 1 295 -17 2220 116 0 13 chr6 111064477 111064780 -78214774 - AluSx SINE Alu -13 299 1 809 253 107 17 chr6 111064972 111065328 -78214226 - L1MC4 LINE L1 -870 7172 6785 31 26 0 0 chr6 111065528 111065566 -78213988 + AT_rich Low_complexity Low_complexity 1 38 0 2166 40 40 79 chr6 111066634 111066937 -78212617 - AluY SINE Alu -20 291 1 1654 244 62 39 chr6 111066987 111067549 -78212005 + MER90 LTR ERV1 1 575 0 228 86 0 0 chr6 111067585 111067620 -78211934 + (TG)n Simple_repeat Simple_repeat 2 36 0 188 163 0 20 chr6 111067832 111067881 -78211673 + (TA)n Simple_repeat Simple_repeat 1 48 0 1411 209 60 34 chr6 111068249 111068695 -78210859 - L1M4 LINE L1 -1946 4200 3743 1017 205 61 26 chr6 111068722 111069034 -78210520 - L1ME3A LINE L1 -5 6165 5843 2131 129 0 46 chr6 111069072 111069397 -78210157 - AluSx SINE Alu -2 310 1 303 42 21 0 chr6 111069576 111069624 -78209930 - L1MC2 LINE L1 -2 6342 6294 1580 183 42 7 chr6 111069639 111069928 -78209626 - AluJo SINE Alu -13 299 1 1759 172 6 44 chr6 111069963 111070283 -78209271 + AluJo SINE Alu 1 308 -4 774 112 80 24 chr6 111070311 111070436 -78209118 + FLAM_A SINE Alu 2 133 0 2827 16 0 0 chr6 111070578 111070888 -78208666 - AluYb8 SINE Alu -8 310 1 25 31 0 0 chr6 111071407 111071439 -78208115 + AT_rich Low_complexity Low_complexity 1 32 0 182 255 137 0 chr6 111071876 111071927 -78207627 - MIR SINE MIR -113 149 92 1123 201 13 4 chr6 111172103 111172332 -78107222 - MER76 LTR ERV -457 231 1 319 320 58 12 chr6 111173056 111173228 -78106326 + MIR SINE MIR 68 247 -15 285 146 0 0 chr6 111173271 111173319 -78106235 + (CA)n Simple_repeat Simple_repeat 1 48 0 570 319 25 5 chr6 111176410 111176614 -78102940 - MIR SINE MIR -41 221 14 442 0 35 0 chr6 111177116 111177174 -78102380 + (TG)n Simple_repeat Simple_repeat 1 60 0 396 298 35 41 chr6 111178625 111178796 -78100758 - LTR16B LTR ERVL -2 462 293 331 315 14 20 chr6 111178887 111179033 -78100521 - LTR16B LTR ERVL -319 145 1 446 279 23 41 chr6 111179624 111179796 -78099758 + MIR SINE MIR 67 235 -27 307 228 25 13 chr6 111179803 111179882 -78099672 - MER116 DNA Mariner 0 80 1 318 127 0 84 chr6 111180238 111180309 -78099245 - MLT2B1 LTR ERVL 0 520 456 207 220 0 0 chr6 111180309 111180359 -78099195 + (CA)n Simple_repeat Simple_repeat 1 50 0 2129 193 25 74 chr6 111180374 111180862 -78098692 - MLT2B1 LTR ERVL -56 464 1 705 198 61 114 chr6 111181366 111181636 -78097918 - MLT2B1 LTR ERVL -83 471 165 2585 121 3 0 chr6 111181685 111182048 -78097506 + THE1B LTR MaLR 1 364 0 264 284 51 62 chr6 111182685 111182762 -78096792 - MIR3 SINE MIR -19 189 113 736 197 8 0 chr6 111182762 111182894 -78096660 + FLAM_C SINE Alu 1 133 0 264 284 51 62 chr6 111182894 111182992 -78096562 - MIR3 SINE MIR -95 113 16 2664 52 0 3 chr6 111183131 111183441 -78096113 - AluY SINE Alu -2 309 1 211 189 0 0 chr6 111184053 111184090 -78095464 + (CAAAG)n Simple_repeat Simple_repeat 3 39 0 222 265 199 49 chr6 111184128 111184415 -78095139 - L2 LINE L2 -2 3311 2982 2938 215 35 52 chr6 111184796 111185280 -78094274 + L1ME2 LINE L1 5151 5642 -522 1847 169 0 25 chr6 111185280 111185600 -78093954 - AluJb SINE Alu 0 312 1 2938 215 35 52 chr6 111185600 111186149 -78093405 + L1ME2 LINE L1 5642 6162 -2 700 266 38 60 chr6 111186160 111186528 -78093026 - L2 LINE L2 -1488 1826 1467 1412 310 91 27 chr6 111186542 111187330 -78092224 - L2 LINE L2 -2093 1221 383 316 308 101 6 chr6 111187574 111187743 -78091811 + MIR SINE MIR 22 206 -56 2750 23 0 7 chr6 111188278 111188582 -78090972 - AluY SINE Alu -9 302 1 193 180 16 33 chr6 111189908 111189969 -78089585 + CT-rich Low_complexity Low_complexity 3 62 0 901 105 0 53 chr6 111189969 111190159 -78089395 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 848 214 79 92 chr6 111190884 111191075 -78088479 + MER110A LTR ERV1 35 227 -248 737 148 25 0 chr6 111191075 111191197 -78088357 - FLAM_A SINE Alu -7 126 2 848 214 79 92 chr6 111191197 111191471 -78088083 + MER110A LTR ERV1 227 472 -3 1296 233 50 43 chr6 111191518 111191934 -78087620 - LTR52 LTR ERVL -2 419 1 547 157 172 90 chr6 111192081 111192353 -78087201 - MER4C LTR ERV1 -20 445 149 * 1610 164 25 48 chr6 111192337 111192691 -78086863 - MER4A LTR ERV1 -318 346 1 1803 221 85 83 chr6 111192784 111193421 -78086133 + MLT1E1 LTR MaLR 17 654 0 603 153 0 0 chr6 111194332 111194463 -78085091 + (TATG)n Simple_repeat Simple_repeat 2 132 0 1476 142 11 68 chr6 111194627 111194850 -78084704 - MLT1B LTR MaLR -2 388 183 2177 100 10 3 chr6 111194850 111195140 -78084414 - AluSg SINE Alu -18 292 1 1476 142 11 68 chr6 111195140 111195197 -78084357 - MLT1B LTR MaLR -207 183 124 2088 121 53 5 chr6 111195197 111195573 -78083981 + LTR7 LTR ERV1 1 450 0 652 155 93 8 chr6 111195573 111195687 -78083867 - MLT1B LTR MaLR -261 129 5 1189 231 15 47 chr6 111196208 111196546 -78083008 + MLT1B LTR MaLR 64 390 0 364 194 28 0 chr6 111196638 111196710 -78082844 + MER110 LTR ERV1 404 477 -14 256 113 57 0 chr6 111197350 111197403 -78082151 + GA-rich Low_complexity Low_complexity 4 59 0 486 224 187 28 chr6 111197428 111197642 -78081912 - MLT1L LTR MaLR 0 615 368 1035 205 5 36 chr6 111197748 111197972 -78081582 - LTR68 LTR ERV1 -127 613 397 4097 62 0 10 chr6 111197977 111198479 -78081075 + L1PA7 LINE L1 5655 6151 -3 291 115 0 0 chr6 111198480 111198532 -78081022 + L1MC3 LINE L1 7580 7631 -154 236 159 0 16 chr6 111198630 111198693 -78080861 + (CA)n Simple_repeat Simple_repeat 2 63 0 192 200 0 0 chr6 111200323 111200363 -78079191 + (TA)n Simple_repeat Simple_repeat 1 40 0 662 203 39 0 chr6 111200822 111200950 -78078604 + MER58B DNA MER1_type 209 341 0 1825 198 37 27 chr6 111202146 111202555 -78076999 - MLT1C LTR MaLR -2 465 53 303 302 52 17 chr6 111203387 111203503 -78076051 + MIR SINE MIR 124 243 -19 319 258 123 31 chr6 111203694 111203857 -78075697 - L1ME4a LINE L1 -127 5994 5817 902 185 54 0 chr6 111203861 111204045 -78075509 + MLT1C LTR MaLR 199 392 -75 1205 163 39 39 chr6 111204205 111204463 -78075091 - THE1C LTR MaLR 0 375 118 837 222 75 86 chr6 111204470 111204831 -78074723 - MLT1E2 LTR MaLR -265 361 5 269 327 83 29 chr6 111205932 111206620 -78072934 - L1ME4a LINE L1 -1144 5002 4278 778 246 28 17 chr6 111206846 111207025 -78072529 + MLT1D LTR MaLR 1 181 -324 3969 214 51 24 chr6 111207893 111209230 -78070324 - L1MD1 LINE L1 -15 6227 4856 210 337 34 0 chr6 111210681 111210770 -78068784 + MIR SINE MIR 84 175 -87 1499 182 0 0 chr6 111212187 111212445 -78067109 + L1M4 LINE L1 5413 5670 -514 933 229 213 51 chr6 111212529 111213170 -78066384 - L2 LINE L2 0 3313 2557 916 255 147 34 chr6 111213944 111214360 -78065194 - L2 LINE L2 -35 3278 2816 2026 136 3 3 chr6 111214479 111214773 -78064781 + AluSx SINE Alu 1 294 -18 4300 184 24 42 chr6 111214776 111215763 -78063791 + L1MB8 LINE L1 5209 6178 0 475 271 151 0 chr6 111215763 111215955 -78063599 - L2 LINE L2 -618 2696 2476 507 294 136 43 chr6 111216956 111217191 -78062363 + MIR SINE MIR 2 258 -4 1809 30 0 0 chr6 111217539 111217740 -78061814 + L1PA4 LINE L1 5952 6152 -3 245 299 29 7 chr6 111217891 111218028 -78061526 + (TTATA)n Simple_repeat Simple_repeat 3 142 0 509 239 28 45 chr6 111218261 111218437 -78061117 - L1MD3 LINE L1 -4 7991 7819 2191 76 0 0 chr6 111218510 111218774 -78060780 - AluSx SINE Alu -15 297 34 1802 67 0 0 chr6 111218784 111219008 -78060546 - AluY SINE Alu -11 300 77 536 253 65 24 chr6 111219324 111219494 -78060060 - LTR33 LTR ERVL -8 513 337 323 326 135 22 chr6 111220634 111220864 -78058690 - MIR SINE MIR -4 258 3 189 332 53 53 chr6 111220956 111221146 -78058408 + L3 LINE CR1 786 975 -602 1108 196 70 67 chr6 111221744 111222116 -78057438 - LTR52 LTR ERVL -3 418 46 1041 172 0 24 chr6 111222884 111223053 -78056501 - FRAM SINE Alu 0 166 2 312 243 22 103 chr6 111223079 111223215 -78056339 - MER5B DNA MER1_type -49 129 5 2353 132 22 19 chr6 111223524 111223887 -78055667 + THE1B LTR MaLR 1 364 0 12979 81 10 0 chr6 111223887 111225452 -78054102 + THE1B-int LTR MaLR 1 1580 0 1939 121 92 16 chr6 111225452 111225758 -78053796 + THE1B LTR MaLR 1 329 -35 1911 94 0 0 chr6 111325758 111326002 -77953552 + AluSg SINE Alu 59 302 -8 433 123 0 0 chr6 111326758 111326823 -77952731 + MER5A DNA MER1_type 41 105 -84 1174 88 193 0 chr6 111327256 111327448 -77952106 - MER30 DNA MER1_type -1 229 1 214 249 41 31 chr6 111327498 111327607 -77951947 + MIR SINE MIR 67 176 -66 2028 113 20 33 chr6 111328282 111328584 -77950970 - AluSx SINE Alu -14 298 1 2190 121 0 6 chr6 111328768 111329083 -77950471 - AluSq SINE Alu 0 313 1 180 185 0 0 chr6 111331008 111331062 -77948492 + (CCG)n Simple_repeat Simple_repeat 2 55 0 25 0 0 0 chr6 111331084 111331109 -77948445 + GC_rich Low_complexity Low_complexity 1 25 0 1996 160 0 0 chr6 111333105 111333417 -77946137 - AluSx SINE Alu 0 312 1 851 145 0 22 chr6 111333419 111333557 -77945997 - FLAM_C SINE Alu -8 135 1 469 250 162 0 chr6 111333653 111333789 -77945765 - MIR SINE MIR -54 208 51 2147 50 10 63 chr6 111333838 111334138 -77945416 + AluSc SINE Alu 3 286 -23 705 278 58 5 chr6 111335065 111335288 -77944266 + MIR SINE MIR 28 262 0 335 206 11 180 chr6 111335443 111335632 -77943922 + MIR SINE MIR 89 245 -17 233 301 196 8 chr6 111336361 111336494 -77943060 - MIR SINE MIR -57 205 48 928 237 66 0 chr6 111336891 111337119 -77942435 + MIR SINE MIR 4 246 -16 2288 108 3 0 chr6 111337893 111338190 -77941364 + AluSx SINE Alu 1 298 -14 432 256 185 63 chr6 111338626 111339264 -77940290 - L1MDa LINE L1 -3316 3224 2509 2254 119 10 0 chr6 111339568 111339870 -77939684 + AluSx SINE Alu 1 305 -7 255 267 0 0 chr6 111340031 111340091 -77939463 - HAL1 LINE L1 -838 1669 1610 2282 98 3 3 chr6 111340137 111340433 -77939121 + AluSx SINE Alu 1 296 -16 450 289 56 99 chr6 111340445 111340982 -77938572 - L1MDa LINE L1 -1046 1855 1245 24 53 0 0 chr6 111342269 111342307 -77937247 + AT_rich Low_complexity Low_complexity 1 38 0 282 181 42 0 chr6 111342810 111342882 -77936672 - L1MD3 LINE L1 -1 7994 7920 511 267 33 43 chr6 111343296 111343506 -77936048 - L1MC4 LINE L1 -40 8002 7795 253 264 0 0 chr6 111343557 111343610 -77935944 - L1MC4 LINE L1 -1046 6996 6944 344 270 92 66 chr6 111343772 111343924 -77935630 - MIR SINE MIR -106 156 1 551 129 148 0 chr6 111344136 111344237 -77935317 + FLAM_C SINE Alu 1 116 -17 897 121 0 8 chr6 111344321 111344445 -77935109 + FLAM_C SINE Alu 1 123 -20 24 0 0 0 chr6 111344445 111344469 -77935085 + AT_rich Low_complexity Low_complexity 1 24 0 3409 92 139 23 chr6 111344727 111345294 -77934260 - LTR10E LTR ERV1 0 633 1 265 329 15 36 chr6 111345753 111345890 -77933664 - L2 LINE L2 -561 2753 2620 551 301 75 0 chr6 111346043 111346216 -77933338 + MER91A DNA MER1_type 9 194 -2 252 297 34 17 chr6 111346349 111346467 -77933087 + MER5A DNA MER1_type 49 168 -21 1350 176 75 4 chr6 111347358 111347625 -77931929 - MER58B DNA MER1_type 0 341 56 1542 145 149 0 chr6 111350377 111350639 -77928915 + AluJo SINE Alu 1 301 -11 193 308 55 70 chr6 111351759 111351979 -77927575 - L2 LINE L2 -162 3110 2895 2136 176 0 8 chr6 111351979 111352343 -77927211 - MLT1A1 LTR MaLR -4 361 1 193 308 55 70 chr6 111352343 111352434 -77927120 - L2 LINE L2 -377 2895 2804 216 259 17 0 chr6 111353394 111353452 -77926102 + GA-rich Low_complexity Low_complexity 2 60 0 273 340 155 30 chr6 111353865 111354407 -77925147 + L2 LINE L2 2164 2773 -541 680 179 0 37 chr6 111355502 111355636 -77923918 - FLAM_A SINE Alu -4 129 1 23 0 0 0 chr6 111356098 111356121 -77923433 + AT_rich Low_complexity Low_complexity 1 23 0 696 168 0 58 chr6 111356170 111356307 -77923247 + FLAM_A SINE Alu 1 129 -4 392 271 94 26 chr6 111356334 111356526 -77923028 - L1ME3A LINE L1 0 6170 5966 593 178 199 20 chr6 111359455 111359601 -77919953 + MER58C DNA MER1_type 44 215 0 21 71 0 0 chr6 111360206 111360248 -77919306 + AT_rich Low_complexity Low_complexity 1 42 0 581 317 64 33 chr6 111360259 111360741 -77918813 + L1MC/D LINE L1 3878 4374 -1772 304 256 26 0 chr6 111360887 111360965 -77918589 + MIR SINE MIR 77 156 -106 2575 55 0 7 chr6 111361114 111361421 -77918133 - AluY SINE Alu -6 305 1 503 289 125 10 chr6 111361681 111361889 -77917665 + MIR SINE MIR 28 259 -3 21 0 0 0 chr6 111362053 111362074 -77917480 + AT_rich Low_complexity Low_complexity 1 21 0 2477 54 0 3 chr6 111362217 111362229 -77917325 - AluY SINE Alu -15 296 285 423 0 0 0 chr6 111362229 111362276 -77917278 + (TG)n Simple_repeat Simple_repeat 2 48 0 2477 54 0 3 chr6 111362276 111362560 -77916994 - AluY SINE Alu -26 285 1 435 290 8 0 chr6 111362857 111362981 -77916573 - MIR SINE MIR -118 144 20 203 306 81 9 chr6 111365024 111365135 -77914419 - L2 LINE L2 -38 3234 3116 180 216 0 0 chr6 111365232 111365269 -77914285 - L2 LINE L2 -254 3059 3023 2158 138 3 0 chr6 111365274 111365585 -77913969 - AluSx SINE Alu 0 312 1 247 331 105 20 chr6 111365678 111365926 -77913628 - L2 LINE L2 -341 2973 2705 1208 129 6 0 chr6 111365979 111366150 -77913404 - AluJo SINE Alu -46 266 95 911 194 11 17 chr6 111366371 111366546 -77913008 + FAM SINE Alu 1 174 -1 325 255 83 60 chr6 111366692 111367220 -77912334 + L1MC/D LINE L1 4860 5401 -809 1962 160 0 0 chr6 111367220 111367526 -77912028 - AluJo SINE Alu -6 306 1 325 255 83 60 chr6 111367526 111367594 -77911960 + L1MC/D LINE L1 5401 5466 -744 196 343 0 0 chr6 111368367 111368434 -77911120 + L2 LINE L2 3238 3304 -9 350 288 104 61 chr6 111368449 111368921 -77910633 + L3 LINE CR1 1080 1571 -6 2230 98 0 0 chr6 111368921 111369235 -77910319 - AluSg SINE Alu 0 321 8 340 237 23 121 chr6 111369994 111370167 -77909387 + MER5B DNA MER1_type 1 156 -22 241 355 18 27 chr6 111371975 111372085 -77907469 - L1MC/D LINE L1 -2151 5657 5549 2106 111 24 0 chr6 111372234 111372522 -77907032 - AluSq SINE Alu -18 295 1 544 199 237 0 chr6 111373666 111373822 -77905732 - MIR SINE MIR -22 240 48 266 286 60 21 chr6 111373969 111374203 -77905351 + L2 LINE L2 2230 2472 -842 945 333 53 4 chr6 111374221 111374680 -77904874 + L2 LINE L2 2792 3279 -34 194 204 0 23 chr6 111374703 111374747 -77904807 - MIR SINE MIR -1 261 219 190 91 91 0 chr6 111374803 111374858 -77904696 + (TA)n Simple_repeat Simple_repeat 1 60 0 382 245 27 98 chr6 111374953 111375137 -77904417 - MIR SINE MIR -70 192 22 264 304 0 0 chr6 111375802 111375871 -77903683 + L2 LINE L2 3241 3309 -4 2186 102 3 34 chr6 111376214 111376537 -77903017 - AluSq SINE Alu 0 313 1 227 304 18 0 chr6 111377195 111377251 -77902303 - L2 LINE L2 -17 3255 3199 1465 219 76 82 chr6 111377749 111377855 -77901699 + MLT1F1 LTR MaLR 1 106 -461 2292 120 0 0 chr6 111377855 111378163 -77901391 - AluSx SINE Alu -4 308 1 1465 219 76 82 chr6 111378163 111378630 -77900924 + MLT1F1 LTR MaLR 106 567 0 601 53 0 0 chr6 111379055 111379131 -77900423 - L1MA1 LINE L1 0 6302 6227 262 271 161 64 chr6 111381460 111381678 -77897876 + L3 LINE CR1 1293 1531 -46 839 177 15 84 chr6 111382014 111382168 -77897386 + MER5A DNA MER1_type 1 139 -50 678 200 7 22 chr6 111382168 111382303 -77897251 + FLAM_A SINE Alu 1 133 0 839 177 15 84 chr6 111382303 111382351 -77897203 + MER5A DNA MER1_type 139 189 0 232 195 0 0 chr6 111382364 111382405 -77897149 - MER5A DNA MER1_type 0 189 149 183 255 21 0 chr6 111382437 111382484 -77897070 + MER5A DNA MER1_type 142 189 0 356 234 149 9 chr6 111382488 111382595 -77896959 - MER5A DNA MER1_type -39 150 29 2077 185 66 4 chr6 111384386 111384841 -77894713 + L1MC4a LINE L1 6877 7359 -449 1345 193 81 34 chr6 111384841 111385162 -77894392 - MLT2D LTR ERVL 0 414 79 357 66 82 0 chr6 111385167 111385228 -77894326 + L1MD3 LINE L1 7930 7995 0 197 254 0 99 chr6 111385548 111385619 -77893935 + MIR SINE MIR 22 85 -123 606 14 0 0 chr6 111386800 111386871 -77892683 + (CA)n Simple_repeat Simple_repeat 1 71 0 2193 108 7 0 chr6 111387430 111387718 -77891836 + AluSx SINE Alu 1 290 -22 446 296 41 21 chr6 111387771 111387972 -77891582 - MIR SINE MIR -38 224 20 21 0 0 0 chr6 111388287 111388308 -77891246 + AT_rich Low_complexity Low_complexity 1 21 0 2291 106 0 7 chr6 111389427 111389729 -77889825 + AluSg SINE Alu 1 300 -10 2280 109 0 0 chr6 111389823 111390117 -77889437 - AluSx SINE Alu -18 294 1 384 22 0 0 chr6 111390390 111390435 -77889119 + (TG)n Simple_repeat Simple_repeat 1 45 0 1845 208 23 6 chr6 111390458 111390804 -77888750 + MER47B DNA MER2_type 1 352 -66 305 184 0 26 chr6 111390804 111390880 -77888674 + (CATATA)n Simple_repeat Simple_repeat 2 75 0 1361 217 11 29 chr6 111390887 111391168 -77888386 - AluJo SINE Alu -36 276 1 449 130 14 0 chr6 111391168 111391237 -77888317 + MER47B DNA MER2_type 349 418 0 456 139 0 0 chr6 111391474 111391553 -77888001 + (TGGA)n Simple_repeat Simple_repeat 2 80 0 330 26 0 0 chr6 111391650 111391689 -77887865 + (TG)n Simple_repeat Simple_repeat 2 40 0 363 350 0 6 chr6 111392132 111392289 -77887265 + (CA)n Simple_repeat Simple_repeat 2 157 0 1092 272 106 23 chr6 111393123 111393775 -77885779 - L1ME4a LINE L1 -35 6086 5380 286 304 24 16 chr6 111394240 111394365 -77885189 + L3b LINE CR1 1194 1319 -264 200 274 32 0 chr6 111394393 111394455 -77885099 + L2 LINE L2 3209 3272 0 993 255 124 43 chr6 111395080 111395547 -77884007 - L1ME4a LINE L1 -188 5933 5429 2088 128 0 3 chr6 111395609 111395906 -77883648 - AluSq SINE Alu -17 296 1 372 22 0 0 chr6 111395937 111395982 -77883572 + (CA)n Simple_repeat Simple_repeat 1 45 0 446 211 6 78 chr6 111397210 111397390 -77882164 + L1ME4a LINE L1 5955 6121 0 371 243 133 68 chr6 111397408 111397745 -77881809 + L1ME4a LINE L1 5715 6073 -48 21 0 0 0 chr6 111398311 111398332 -77881222 + AT_rich Low_complexity Low_complexity 1 21 0 1147 191 31 132 chr6 111398635 111399022 -77880532 - MLT1A2 LTR MaLR -11 363 16 275 208 0 0 chr6 111399858 111399911 -77879643 - L2 LINE L2 -10 3303 3251 531 228 6 65 chr6 111399923 111400098 -77879456 + MIR SINE MIR 54 217 -45 189 0 0 0 chr6 111400841 111400862 -77878692 + (TTG)n Simple_repeat Simple_repeat 2 22 0 21 36 0 0 chr6 111401646 111401674 -77877880 + AT_rich Low_complexity Low_complexity 1 28 0 244 344 11 0 chr6 111403058 111403151 -77876403 - L2 LINE L2 0 3272 3179 215 336 60 22 chr6 111403320 111403552 -77876002 + L2 LINE L2 2810 3050 -222 21 36 0 0 chr6 111405371 111405399 -77874155 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 111406449 111406479 -77873075 + AT_rich Low_complexity Low_complexity 1 30 0 418 181 34 102 chr6 111406559 111406736 -77872818 - Charlie7 DNA MER1_type 0 2612 2448 2223 95 7 0 chr6 111408062 111408345 -77871209 + AluSp SINE Alu 1 285 -28 405 0 0 0 chr6 111408345 111408390 -77871164 + (CA)n Simple_repeat Simple_repeat 2 46 0 1385 153 22 0 chr6 111408849 111409078 -77870476 - MER46A DNA MER2_type -2 234 1 211 242 61 15 chr6 111410755 111410821 -77868733 + MIR3 SINE MIR 125 193 -15 364 264 41 16 chr6 111410925 111411046 -77868508 - MIR SINE MIR 0 262 139 342 183 0 0 chr6 111411085 111411156 -77868398 + (CCA)n Simple_repeat Simple_repeat 1 71 0 346 331 8 8 chr6 111411158 111411282 -77868272 - MIR SINE MIR -106 156 33 5044 65 85 120 chr6 111411491 111412347 -77867207 + LTR12 LTR ERV1 1 826 0 6762 88 1 8 chr6 111412360 111413246 -77866308 + HERV9 LTR ERV1 40 919 -7480 * 29102 86 10 6 chr6 111413243 111417078 -77862476 + HERV9 LTR ERV1 1093 4944 -3455 2525 147 151 76 chr6 111417079 111417898 -77861656 + HERV9 LTR ERV1 840 1720 -5176 * 4736 97 3 14 chr6 111417892 111418543 -77861011 + HERV9 LTR ERV1 7756 8399 0 2190 53 365 181 chr6 111418544 111419036 -77860518 + LTR12 LTR ERV1 2 402 -312 300 27 0 0 chr6 111419036 111419073 -77860481 + (TTTAA)n Simple_repeat Simple_repeat 4 40 0 4409 30 0 0 chr6 111419073 111419582 -77859972 - L1PA4 LINE L1 -10 6145 5637 2190 53 365 181 chr6 111419582 111419690 -77859864 + LTR12 LTR ERV1 401 714 0 2056 133 13 0 chr6 111419783 111420083 -77859471 - AluSx SINE Alu -8 304 1 235 310 132 20 chr6 111420226 111420423 -77859131 + L2 LINE L2 2172 2390 -924 2118 117 42 0 chr6 111420542 111420876 -77858678 - L1PA15 LINE L1 -4 6161 5814 2074 141 20 3 chr6 111420939 111421245 -77858309 - AluSx SINE Alu -1 311 1 1111 208 122 39 chr6 111421537 111421874 -77857680 + MLT1A1 LTR MaLR 1 365 0 39 50 0 0 chr6 111422055 111422115 -77857439 + AT_rich Low_complexity Low_complexity 1 60 0 804 145 187 0 chr6 111422135 111422301 -77857253 - L1MA5A LINE L1 -6 6291 6095 1088 199 102 123 chr6 111422301 111422724 -77856830 + MLT2B1 LTR ERVL 1 414 0 1665 165 39 0 chr6 111422815 111423094 -77856460 + AluJo SINE Alu 1 290 -22 207 0 0 0 chr6 111423263 111423286 -77856268 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2218 93 0 0 chr6 111423289 111423567 -77855987 - AluSc SINE Alu -31 278 1 4353 130 50 52 chr6 111424946 111425733 -77853821 - LTR1 LTR ERV1 0 785 1 6762 133 34 8 chr6 111425775 111427229 -77852325 - HUERS-P2 LTR ERV1 0 3088 1545 4395 199 71 19 chr6 111427250 111428162 -77851392 - HUERS-P2 LTR ERV1 -1915 1173 214 2602 18 0 0 chr6 111428181 111428491 -77851063 - AluY SINE Alu 0 312 3 396 227 16 62 chr6 111428510 111428638 -77850916 - HUERS-P2 LTR ERV1 -2966 122 1 233 143 24 0 chr6 111428667 111428709 -77850845 + LTR1 LTR ERV1 743 785 0 2157 127 0 0 chr6 111430438 111430729 -77848825 + AluSx SINE Alu 2 292 -20 38 39 0 0 chr6 111430951 111431003 -77848551 + AT_rich Low_complexity Low_complexity 1 52 0 205 226 119 36 chr6 111433110 111433194 -77846360 - MIR3 SINE MIR -32 176 86 835 315 72 55 chr6 111433291 111433392 -77846162 - L3 LINE CR1 -120 1457 1359 4342 114 12 8 chr6 111433392 111434039 -77845515 + L1PA16 LINE L1 5508 6157 -9 835 315 72 55 chr6 111434039 111434501 -77845053 - L3 LINE CR1 -218 1359 878 2231 116 3 3 chr6 111434501 111434812 -77844742 - AluSq SINE Alu -2 311 1 835 315 72 55 chr6 111434812 111434923 -77844631 - L3 LINE CR1 -699 878 770 760 263 98 28 chr6 111435796 111436081 -77843473 - L2 LINE L2 -1 3312 3008 440 289 78 12 chr6 111436471 111436637 -77842917 - MIR3 SINE MIR -27 181 5 36 53 0 0 chr6 111436739 111436796 -77842758 + AT_rich Low_complexity Low_complexity 1 57 0 433 217 150 33 chr6 111437144 111437324 -77842230 + MER3 DNA MER1_type 7 207 -2 23 0 0 0 chr6 111437659 111437682 -77841872 + AT_rich Low_complexity Low_complexity 1 23 0 519 238 98 12 chr6 111439155 111439319 -77840235 - MIR SINE MIR -77 185 8 618 209 5 128 chr6 111439369 111439565 -77839989 + MER5B DNA MER1_type 1 172 -6 227 312 18 18 chr6 111439749 111439858 -77839696 - MIR SINE MIR -1 261 153 392 197 55 98 chr6 111439861 111440044 -77839510 - MER104 DNA Tc2 -5 175 1 344 225 12 0 chr6 111440047 111440127 -77839427 - MIR SINE MIR -111 151 71 328 235 52 0 chr6 111440127 111440242 -77839312 - L1ME4a LINE L1 -252 5869 5749 683 256 188 36 chr6 111441149 111441622 -77837932 - MLT1H1 LTR MaLR -8 547 3 337 300 100 13 chr6 111442430 111442484 -77837070 - MER5A DNA MER1_type -6 183 135 2155 129 0 3 chr6 111442484 111442787 -77836767 - AluSg SINE Alu -8 302 1 337 300 100 13 chr6 111442787 111442882 -77836672 - MER5A DNA MER1_type -54 135 21 264 302 119 0 chr6 111444616 111444742 -77834812 - MIR SINE MIR -14 248 108 187 302 0 0 chr6 111447011 111447064 -77832490 - L2 LINE L2 0 3272 3220 2282 102 0 7 chr6 111448814 111449118 -77830436 - AluSq SINE Alu -11 302 1 268 352 105 0 chr6 111449228 111449333 -77830221 - MER5B DNA MER1_type -12 166 51 288 137 0 0 chr6 111449813 111449864 -77829690 + (TG)n Simple_repeat Simple_repeat 2 52 0 2193 184 45 45 chr6 111450350 111450497 -77829057 + MLT1D LTR MaLR 1 147 -358 1415 137 78 5 chr6 111450497 111450716 -77828838 - MER46A DNA MER2_type -1 235 1 2193 184 45 45 chr6 111450716 111451073 -77828481 + MLT1D LTR MaLR 146 505 0 235 336 48 41 chr6 111452153 111452299 -77827255 + MIR3 SINE MIR 22 168 -40 735 245 38 0 chr6 111452444 111452603 -77826951 + MER5A DNA MER1_type 4 168 -21 1272 119 0 0 chr6 111452630 111452815 -77826739 - SVA Other Other -5 1381 1197 993 192 0 22 chr6 111453197 111453379 -77826175 + MER5B DNA MER1_type 1 178 0 354 247 86 0 chr6 111453406 111453487 -77826067 + MER5A DNA MER1_type 18 105 -84 248 111 44 0 chr6 111453520 111453565 -77825989 - Alu SINE Alu -1 302 256 330 235 165 35 chr6 111454316 111454571 -77824983 - L1ME4a LINE L1 -230 5891 5604 7277 58 12 8 chr6 111454926 111456385 -77823169 + SVA Other Other 72 1381 -5 683 260 39 0 chr6 111456417 111456571 -77822983 - MER5A DNA MER1_type -26 163 4 250 240 0 0 chr6 111456925 111456975 -77822579 - LTR41 LTR ERVL -256 517 468 368 256 107 16 chr6 111460202 111460323 -77819231 + L2 LINE L2 3182 3313 0 300 263 199 6 chr6 111461207 111461378 -77818176 - L1MC/D LINE L1 -2005 5803 5600 23 33 0 0 chr6 111461378 111461408 -77818146 + AT_rich Low_complexity Low_complexity 1 30 0 2228 131 42 34 chr6 111461470 111461828 -77817726 - THE1B LTR MaLR -3 361 1 206 260 27 55 chr6 111462310 111462383 -77817171 - MIR3 SINE MIR -24 184 114 563 190 33 0 chr6 111462386 111462397 -77817157 + MER53 DNA DNA 1 10 -179 1846 143 196 16 chr6 111462397 111462760 -77816794 - MSTA LTR MaLR 0 428 1 563 190 33 0 chr6 111462760 111462869 -77816685 + MER53 DNA DNA 10 125 -64 1707 181 0 17 chr6 111462881 111463174 -77816380 + AluJo SINE Alu 3 290 -22 261 0 0 0 chr6 111464301 111464323 -77815231 + (CA)n Simple_repeat Simple_repeat 1 51 0 261 0 0 0 chr6 111464323 111464352 -77815202 + (CA)n Simple_repeat Simple_repeat 2 30 0 224 243 0 43 chr6 111464397 111464467 -77815087 - MIR SINE MIR -60 202 136 348 24 0 0 chr6 111464798 111464839 -77814715 + (CA)n Simple_repeat Simple_repeat 2 42 0 1768 140 11 7 chr6 111464847 111465118 -77814436 - AluSx SINE Alu -19 293 22 236 217 0 0 chr6 111465350 111465396 -77814158 + L2 LINE L2 3183 3228 -85 333 234 47 28 chr6 111466542 111466649 -77812905 - MIR SINE MIR -50 212 104 1839 144 3 11 chr6 111466657 111466941 -77812613 + AluSx SINE Alu 6 287 -25 796 274 91 19 chr6 111467006 111467269 -77812285 - MLT1I LTR MaLR 0 409 128 1523 183 26 26 chr6 111467338 111467649 -77811905 + MER58B DNA MER1_type 2 312 -29 684 274 124 31 chr6 111467925 111468776 -77810778 + L1ME4a LINE L1 5176 6118 -3 2073 115 42 3 chr6 111470674 111470962 -77808592 + AluSx SINE Alu 1 299 -13 229 26 53 0 chr6 111471010 111471048 -77808506 + (TA)n Simple_repeat Simple_repeat 2 41 0 225 211 0 0 chr6 111471049 111471101 -77808453 - L1MC4 LINE L1 -1339 6703 6652 261 282 39 58 chr6 111471139 111471242 -77808312 + L2 LINE L2 3162 3262 -10 27 62 0 0 chr6 111472238 111472286 -77807268 + AT_rich Low_complexity Low_complexity 1 48 0 858 270 101 17 chr6 111472591 111472947 -77806607 + LTR16C LTR ERVL 106 491 0 268 356 38 23 chr6 111473064 111473196 -77806358 + L2 LINE L2 3139 3272 0 188 111 28 0 chr6 111473197 111473233 -77806321 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 184 372 54 16 chr6 111474079 111474208 -77805346 + MIR SINE MIR 87 220 -42 1381 147 36 117 chr6 111474485 111474818 -77804736 + AluYb8 SINE Alu 1 306 -12 240 59 59 0 chr6 111475375 111475426 -77804128 + (TA)n Simple_repeat Simple_repeat 1 54 0 221 297 0 0 chr6 111476296 111476360 -77803194 + CT-rich Low_complexity Low_complexity 1 64 0 633 261 75 0 chr6 111476677 111476865 -77802689 + MIR SINE MIR 61 262 0 360 284 145 52 chr6 111476913 111477077 -77802477 - L2 LINE L2 -483 2831 2684 1627 196 87 31 chr6 111477077 111477490 -77802064 - MER63B DNA MER1_type 0 436 1 360 284 145 52 chr6 111477490 111477691 -77801863 - L2 LINE L2 -630 2684 2432 1584 208 123 17 chr6 111477691 111478042 -77801512 + MLT1E LTR MaLR 206 593 0 300 233 0 0 chr6 111479042 111479102 -77800452 - L2 LINE L2 0 3313 3254 28 95 0 0 chr6 111479225 111479309 -77800245 + AT_rich Low_complexity Low_complexity 1 84 0 2520 48 0 0 chr6 111479466 111479758 -77799796 - AluY SINE Alu -19 292 1 328 288 4 80 chr6 111479927 111480153 -77799401 - MLT1J LTR MaLR -197 314 106 780 168 13 134 chr6 111482116 111482348 -77797206 - LTR41 LTR ERVL -40 733 530 5240 206 8 24 chr6 111482454 111483342 -77796212 - L1 LINE L1 -755 5391 4526 2042 137 0 7 chr6 111483342 111483642 -77795912 - AluJb SINE Alu -14 298 1 5240 206 8 24 chr6 111483642 111483970 -77795584 - L1 LINE L1 -1620 4526 4194 2501 185 26 32 chr6 111484145 111484648 -77794906 + MLT1D LTR MaLR 4 503 -2 180 111 0 0 chr6 111485604 111485631 -77793923 + (CATTC)n Simple_repeat Simple_repeat 1 27 0 190 333 0 0 chr6 111485650 111485704 -77793850 - L2 LINE L2 -18 3295 3242 34845 34 1 1 chr6 111485721 111490639 -77788915 - L1PA3 LINE L1 0 6155 1239 235 211 39 0 chr6 111490957 111491009 -77788545 - L2 LINE L2 -25 3247 3194 21 0 0 0 chr6 111493911 111493932 -77785622 + AT_rich Low_complexity Low_complexity 1 21 0 1106 276 86 51 chr6 111497486 111498969 -77780585 + L1MEc LINE L1 878 2413 -3983 998 191 10 21 chr6 111499024 111499218 -77780336 - MER20 DNA MER1_type -1 218 27 605 269 0 6 chr6 111499439 111499599 -77779955 + L1MEc LINE L1 2719 2877 -3338 1812 247 41 14 chr6 111499610 111500271 -77779283 + L1MEc LINE L1 3935 4613 -1602 2641 97 49 132 chr6 111500273 111500717 -77778837 - MER4B LTR ERV1 0 779 238 2289 93 0 38 chr6 111500717 111501030 -77778524 - AluY SINE Alu -10 301 1 2641 97 49 132 chr6 111501030 111501250 -77778304 - MER4B LTR ERV1 -541 238 1 1134 277 26 57 chr6 111501256 111501902 -77777652 + L1MEc LINE L1 4618 5243 -972 21 36 0 0 chr6 111502268 111502296 -77777258 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr6 111502692 111502727 -77776827 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr6 111502733 111502754 -77776800 + (TTA)n Simple_repeat Simple_repeat 2 22 0 682 140 40 0 chr6 111502759 111502859 -77776695 - AluJo SINE Alu -33 279 176 537 245 0 0 chr6 111502852 111502958 -77776596 - AluJo SINE Alu -204 108 3 * 1638 194 30 19 chr6 111503052 111503413 -77776141 + MLT1A1 LTR MaLR 1 365 0 2147 116 10 0 chr6 111504494 111504787 -77774767 - AluSq SINE Alu -17 296 1 2793 237 54 17 chr6 111504849 111505770 -77773784 + L1MEc LINE L1 5280 6233 -6 459 302 13 27 chr6 111508516 111508665 -77770889 - MIR SINE MIR -66 196 50 225 0 0 0 chr6 111508986 111509011 -77770543 + (GGGAGA)n Simple_repeat Simple_repeat 3 27 0 299 248 43 8 chr6 111511674 111511791 -77767763 - L1ME4a LINE L1 -46 6075 5955 235 341 12 0 chr6 111512589 111512671 -77766883 + L2 LINE L2 3223 3305 -8 289 281 50 41 chr6 111513030 111513151 -77766403 + MER5A DNA MER1_type 46 167 -22 256 374 91 9 chr6 111514346 111514565 -77764989 + MIR SINE MIR 21 257 -5 183 259 0 0 chr6 111515034 111515092 -77764462 + CT-rich Low_complexity Low_complexity 3 60 0 280 374 0 17 chr6 111515610 111515725 -77763829 + MIR3 SINE MIR 62 174 -34 23 68 0 0 chr6 111516034 111516078 -77763476 + AT_rich Low_complexity Low_complexity 1 44 0 196 200 33 0 chr6 111518681 111518741 -77760813 + GA-rich Low_complexity Low_complexity 1 62 0 346 282 12 0 chr6 111520123 111520208 -77759346 - MIR SINE MIR -127 135 50 182 250 21 0 chr6 111520732 111520780 -77758774 + L2 LINE L2 3265 3313 0 201 216 0 0 chr6 111521600 111521637 -77757917 - MIR SINE MIR -110 152 116 429 319 90 16 chr6 111521660 111521970 -77757584 + L2 LINE L2 1867 2199 -1115 249 255 11 141 chr6 111522225 111522409 -77757145 + L2 LINE L2 2243 2402 -912 674 145 16 0 chr6 111522444 111522568 -77756986 - MLT1E1 LTR MaLR 0 654 529 * 1546 205 87 29 chr6 111522557 111522937 -77756617 - MLT1E1 LTR MaLR -252 402 1 365 350 56 48 chr6 111522946 111523303 -77756251 + L2 LINE L2 2598 2957 -357 282 153 0 0 chr6 111524725 111524784 -77754770 + A-rich Low_complexity Low_complexity 1 59 0 21 36 0 0 chr6 111525352 111525380 -77754174 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 31 chr6 111525547 111525566 -77753988 + AT_rich Low_complexity Low_complexity 1 20 -11 1966 151 23 37 chr6 111525566 111525644 -77753910 + MER7A DNA MER2_type 2 80 -2958 1633 196 7 0 chr6 111525644 111525956 -77753598 - AluJb SINE Alu 0 314 1 1966 151 23 37 chr6 111525956 111526228 -77753326 + MER7A DNA MER2_type 80 346 0 21 0 0 31 chr6 111526228 111526240 -77753314 + AT_rich Low_complexity Low_complexity 20 31 0 365 314 75 37 chr6 111526741 111526929 -77752625 + MIR SINE MIR 53 247 -15 21 71 0 0 chr6 111529066 111529108 -77750446 + AT_rich Low_complexity Low_complexity 1 42 0 660 112 0 0 chr6 111530215 111530304 -77749250 + AluSc SINE Alu 1 89 -220 261 323 114 24 chr6 111530389 111530555 -77748999 + MIR3 SINE MIR 20 202 -6 524 232 66 26 chr6 111530927 111531078 -77748476 - MER63A DNA MER1_type 0 210 54 14517 59 0 4 chr6 111531189 111533094 -77746460 - L1P LINE L1 -4248 1898 1 24798 130 16 16 chr6 111533533 111538945 -77740609 + L1PA8A LINE L1 995 6446 0 357 309 103 0 chr6 111538951 111539077 -77740477 + MIR SINE MIR 97 235 -27 763 208 39 45 chr6 111539298 111539395 -77740159 + MER45A DNA AcHobo 1 98 -1483 1105 241 40 45 chr6 111539395 111539793 -77739761 + MSTD LTR MaLR 1 396 0 763 208 39 45 chr6 111539793 111539873 -77739681 + MER45A DNA AcHobo 98 177 -1 214 383 0 32 chr6 111540100 111540194 -77739360 - L2 LINE L2 -92 3180 3090 195 309 123 0 chr6 111540824 111540905 -77738649 + L2 LINE L2 3199 3289 -24 645 81 0 0 chr6 111541004 111541091 -77738463 - L1PB1 LINE L1 -44 6107 6021 276 30 0 0 chr6 111541905 111541938 -77737616 + (TTA)n Simple_repeat Simple_repeat 3 35 0 3373 120 43 6 chr6 111542725 111543232 -77736322 - MER1A DNA MER1_type 0 527 2 186 43 0 0 chr6 111543303 111543326 -77736228 + (CA)n Simple_repeat Simple_repeat 2 24 0 440 62 0 15 chr6 111544773 111544838 -77734716 + (TG)n Simple_repeat Simple_repeat 2 65 0 532 250 31 45 chr6 111545384 111545608 -77733946 - L1ME LINE L1 -345 5776 5556 830 157 0 43 chr6 111545778 111545918 -77733636 - AluJo SINE Alu -178 134 1 615 182 40 62 chr6 111545919 111546095 -77733459 - MSTB2 LTR MaLR -8 449 278 569 151 19 0 chr6 111546117 111546223 -77733331 - MSTB2 LTR MaLR -288 108 1 558 209 9 0 chr6 111596615 111596725 -77682829 + MER1B DNA MER1_type 229 339 0 514 335 138 16 chr6 111597239 111597543 -77682011 + L2 LINE L2 2926 3266 -6 3867 119 34 32 chr6 111597660 111598281 -77681273 + L1PA13 LINE L1 5535 6156 -7 345 156 102 86 chr6 111598300 111598428 -77681126 + L1ME4a LINE L1 5965 6094 -27 5553 137 37 45 chr6 111598429 111599580 -77679974 - L1MA8 LINE L1 -12 6279 5137 1880 140 124 30 chr6 111599590 111599954 -77679600 - L1PA16 LINE L1 -2 6164 5767 903 228 14 28 chr6 111600002 111600213 -77679341 + AluJb SINE Alu 90 297 -15 24 32 0 0 chr6 111600238 111600269 -77679285 + AT_rich Low_complexity Low_complexity 1 31 0 238 265 59 0 chr6 111602123 111602191 -77677363 - MIR SINE MIR -111 151 80 220 208 21 0 chr6 111602279 111602327 -77677227 + CT-rich Low_complexity Low_complexity 4 52 0 28 29 0 0 chr6 111602559 111602594 -77676960 + AT_rich Low_complexity Low_complexity 1 35 0 1488 153 8 8 chr6 111602594 111602843 -77676711 - L1MA1 LINE L1 -7 6295 6047 657 341 107 21 chr6 111602971 111603086 -77676468 - L2 LINE L2 -2 3311 3207 234 0 0 0 chr6 111603086 111603112 -77676442 + (GA)n Simple_repeat Simple_repeat 1 26 0 657 341 107 21 chr6 111603112 111603476 -77676078 - L2 LINE L2 -106 3207 2790 418 260 21 0 chr6 111604082 111604178 -77675376 + MER94 DNA DNA 1 98 -36 1897 150 0 33 chr6 111604375 111604681 -77674873 - AluJb SINE Alu -16 296 1 1402 165 137 0 chr6 111605891 111606176 -77673378 - MER33 DNA MER1_type 0 324 1 275 349 37 0 chr6 111606189 111606288 -77673266 + MER5C DNA MER1_type 1 106 -218 1127 46 0 0 chr6 111606288 111606418 -77673136 - L1PA15 LINE L1 -13 6152 6023 6184 125 15 17 chr6 111606469 111607047 -77672507 - L1PB3 LINE L1 -7 6147 5569 2563 52 0 13 chr6 111607047 111607355 -77672199 + AluY SINE Alu 1 304 -7 6184 125 15 17 chr6 111607355 111608154 -77671400 - L1PB3 LINE L1 -585 5569 4774 295 266 138 0 chr6 111608173 111608267 -77671287 + MER5C DNA MER1_type 218 324 0 282 98 0 0 chr6 111608755 111608796 -77670758 - L1 LINE L1 -1163 4983 4943 389 309 0 24 chr6 111609716 111609839 -77669715 - L2 LINE L2 -518 2796 2677 617 225 146 38 chr6 111611713 111611926 -77667628 + MIR SINE MIR 14 249 -13 591 245 200 20 chr6 111613272 111613472 -77666082 + MIR SINE MIR 19 254 -8 272 233 0 17 chr6 111613643 111613703 -77665851 + L2 LINE L2 3255 3313 0 1971 130 0 11 chr6 111614125 111614410 -77665144 - AluSx SINE Alu -30 282 1 272 207 35 58 chr6 111614936 111615023 -77664531 + MIR3 SINE MIR 124 208 0 367 333 133 18 chr6 111615553 111615838 -77663716 + MLT1J2 LTR MaLR 70 387 -63 2504 52 0 3 chr6 111615997 111616303 -77663251 - AluY SINE Alu -6 305 1 1780 129 55 7 chr6 111616446 111616739 -77662815 - AluSx SINE Alu 0 306 1 553 276 122 0 chr6 111617696 111617852 -77661702 - MER96 DNA MER1_type 0 175 1 21 0 0 0 chr6 111618060 111618081 -77661473 + AT_rich Low_complexity Low_complexity 1 21 0 197 279 0 0 chr6 111619293 111619336 -77660218 + L3b LINE CR1 1286 1328 -255 261 167 91 30 chr6 111620198 111620264 -77659290 + HERV15 LTR ERV1 8657 8726 -9 2195 91 37 0 chr6 111620385 111620681 -77658873 - AluSc SINE Alu -2 307 1 185 150 0 25 chr6 111622116 111622156 -77657398 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 1216 306 37 32 chr6 111622573 111622978 -77656576 + MLT1I LTR MaLR 1 407 -2 365 221 13 0 chr6 111623046 111623123 -77656431 + MLT1J2 LTR MaLR 372 449 -118 3762 138 7 37 chr6 111623260 111623831 -77655723 + MLT2B3 LTR ERVL 1 554 0 322 314 41 0 chr6 111623840 111623961 -77655593 + L2 LINE L2 2128 2253 -1061 430 180 53 0 chr6 111623966 111624059 -77655495 + MLT1H1 LTR MaLR 415 520 -35 588 298 93 23 chr6 111625036 111625251 -77654303 - MIR SINE MIR -30 232 3 724 155 7 14 chr6 111625570 111625718 -77653836 + GA-rich Low_complexity Low_complexity 4 150 0 609 239 0 11 chr6 111626338 111626625 -77652929 + CT-rich Low_complexity Low_complexity 1 283 0 582 248 166 44 chr6 111629674 111629993 -77649561 + L2 LINE L2 2946 3303 -10 371 330 86 43 chr6 111630967 111631340 -77648214 - L2 LINE L2 -4 3309 2921 298 225 278 16 chr6 111632090 111632277 -77647277 + L1MCc LINE L1 1297 1532 -4891 1499 260 83 25 chr6 111632337 111632772 -77646782 - LTR16B LTR ERVL 0 464 5 449 301 30 25 chr6 111632781 111633017 -77646537 - HERV16 LTR ERVL -5 4991 4755 2861 119 29 0 chr6 111633034 111633453 -77646101 + Tigger3(Golem) DNA MER2_type 2597 3027 -2 1016 371 57 34 chr6 111633492 111634053 -77645501 - HERV16 LTR ERVL -1605 3391 2818 761 214 181 14 chr6 111634056 111634266 -77645288 + MER93b LTR ERV1 1 245 -128 1185 304 66 25 chr6 111634284 111634771 -77644783 - HERV16 LTR ERVL -2561 2435 1929 253 205 0 84 chr6 111634842 111634897 -77644657 + L1MCc LINE L1 3068 3115 -3826 1751 154 0 48 chr6 111634897 111635209 -77644345 + AluJo SINE Alu 1 297 -15 253 205 0 84 chr6 111635209 111635236 -77644318 + L1MCc LINE L1 3115 3143 -3798 26 64 0 0 chr6 111635302 111635349 -77644205 + AT_rich Low_complexity Low_complexity 1 47 0 766 242 87 35 chr6 111636046 111636277 -77643277 + MIR SINE MIR 20 262 0 2096 133 121 24 chr6 111636309 111636721 -77642833 - Tigger2 DNA MER2_type 0 2718 2267 466 121 15 0 chr6 111636705 111636771 -77642783 - Tigger2 DNA MER2_type -2649 69 3 * 221 206 14 41 chr6 111636800 111636873 -77642681 + (TTATA)n Simple_repeat Simple_repeat 5 75 0 196 167 0 0 chr6 111637686 111637722 -77641832 + MIR SINE MIR 215 250 -12 354 236 268 0 chr6 111637933 111638056 -77641498 + MIR SINE MIR 6 161 -101 305 290 165 58 chr6 111641612 111641940 -77637614 + HAL1 LINE L1 811 1173 -1334 309 274 108 6 chr6 111641981 111642138 -77637416 + HAL1 LINE L1 1246 1418 -1089 274 297 24 48 chr6 111642474 111642639 -77636915 + L1ME LINE L1 5641 5801 -361 652 128 15 60 chr6 111643981 111644114 -77635440 + MER106B DNA MER1_type 29 155 -904 36 70 0 0 chr6 111644117 111644188 -77635366 + AT_rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chr6 111645493 111645514 -77634040 + AT_rich Low_complexity Low_complexity 1 21 0 304 200 221 41 chr6 111645737 111645932 -77633622 - MLT1K LTR MaLR -10 578 349 590 288 12 12 chr6 111646169 111646329 -77633225 + MER5B DNA MER1_type 2 161 -17 760 192 31 116 chr6 111646331 111646555 -77632999 + MER63A DNA MER1_type 2 206 -4 814 321 57 48 chr6 111646587 111647197 -77632357 + L2 LINE L2 1947 2562 -752 277 290 65 28 chr6 111647227 111647334 -77632220 - L2 LINE L2 -221 3051 2941 1083 311 96 22 chr6 111647338 111647439 -77632115 + L2 LINE L2 2263 2355 -959 1994 121 0 65 chr6 111647439 111647761 -77631793 - AluSx SINE Alu -11 301 1 1083 311 96 22 chr6 111647761 111648282 -77631272 + L2 LINE L2 2355 2931 -383 2176 133 55 37 chr6 111648559 111649080 -77630474 - MLT2A2 LTR ERVL 0 554 1 332 340 0 19 chr6 111649082 111649185 -77630369 + L2 LINE L2 3203 3303 -10 22 56 0 0 chr6 111649324 111649360 -77630194 + AT_rich Low_complexity Low_complexity 1 36 0 213 239 183 28 chr6 111650156 111650227 -77629327 - MIR SINE MIR -149 113 32 2499 92 0 0 chr6 111650528 111650834 -77628720 - AluSx SINE Alu -6 306 1 187 222 111 0 chr6 111650992 111651037 -77628517 + MIR3 SINE MIR 131 180 -28 205 341 36 58 chr6 111652937 111653050 -77626504 + MER5A DNA MER1_type 46 155 -34 555 250 164 0 chr6 111653050 111653202 -77626352 - MER5A DNA MER1_type 0 189 13 280 48 95 0 chr6 111653585 111653627 -77625927 - MLT2B1 LTR ERVL 0 515 470 2199 173 66 28 chr6 111653735 111653758 -77625796 - MLT2B1 LTR ERVL -32 488 467 209 33 33 0 chr6 111653758 111653788 -77625766 + (TCTA)n Simple_repeat Simple_repeat 3 33 0 2199 173 66 28 chr6 111653788 111654233 -77625321 - MLT2B1 LTR ERVL -53 467 2 807 260 64 17 chr6 111654233 111654529 -77625025 - L1ME LINE L1 -4458 2129 1820 561 239 51 73 chr6 111654667 111655095 -77624459 - L1ME LINE L1 -4986 1410 992 862 264 89 59 chr6 111657531 111657990 -77621564 - MLT1J LTR MaLR -38 473 1 4175 129 74 22 chr6 111658249 111658557 -77620997 + L1MA9 LINE L1 5469 5760 -552 536 42 14 0 chr6 111658557 111658628 -77620926 + (CA)n Simple_repeat Simple_repeat 2 73 0 4175 129 74 22 chr6 111658628 111659120 -77620434 + L1MA9 LINE L1 5760 6310 -2 313 295 47 11 chr6 111659274 111659430 -77620124 + L3 LINE CR1 1279 1502 -75 244 290 130 30 chr6 111659816 111659916 -77619638 + L3 LINE CR1 1462 1571 -6 16242 37 3 1 chr6 111660459 111662555 -77616999 + L1P LINE L1 1601 3701 -2445 630 298 21 0 chr6 111666102 111666290 -77613264 - MIR SINE MIR -61 201 10 1643 150 31 77 chr6 111667745 111668098 -77611456 + MER58B DNA MER1_type 1 337 -4 317 321 38 0 chr6 111668367 111668473 -77611081 + MER91C DNA MER1_type 1 110 -30 573 301 136 17 chr6 111668540 111668885 -77610669 - LTR16B LTR ERVL -2 462 77 319 326 79 16 chr6 111669931 111670121 -77609433 + L1M4 LINE L1 4918 5119 -1027 475 329 74 14 chr6 111670221 111670437 -77609117 - MIR SINE MIR -14 248 20 3941 138 24 15 chr6 111670821 111671042 -77608512 - L1MC1 LINE L1 -5 6328 6110 2384 165 21 16 chr6 111671042 111671466 -77608088 - MSTB LTR MaLR 0 426 1 3941 138 24 15 chr6 111671466 111671910 -77607644 - L1MC1 LINE L1 -223 6110 5657 796 241 34 24 chr6 111675959 111676166 -77603388 + MIR SINE MIR 5 213 -49 926 254 105 6 chr6 111677184 111677518 -77602036 + L2 LINE L2 2826 3192 -121 345 317 58 0 chr6 111677851 111677971 -77601583 + L2 LINE L2 3116 3242 -30 194 352 11 0 chr6 111678020 111678108 -77601446 - L2 LINE L2 -284 2988 2900 2326 101 48 31 chr6 111678177 111678532 -77601022 - THE1B LTR MaLR 0 364 4 2256 133 53 0 chr6 111678566 111678905 -77600649 + LTR18A LTR ERVL 1 357 0 35054 166 14 7 chr6 111678920 111684049 -77595505 + HERVL18-A1 LTR ERVL 10 5189 -858 2687 90 24 57 chr6 111684049 111684505 -77595049 + MLT2A1 LTR ERVL 4 444 0 35054 166 14 7 chr6 111684505 111685371 -77594183 + HERVL18-A1 LTR ERVL 5189 6047 0 2250 144 53 3 chr6 111685372 111685712 -77593842 + LTR18A LTR ERVL 1 357 0 436 225 18 0 chr6 111687693 111687804 -77591750 - MER94 DNA DNA -15 119 7 979 266 90 56 chr6 111687905 111688348 -77591206 - L2 LINE L2 -23 3290 2833 268 158 37 98 chr6 111689079 111689161 -77590393 - MIR3 SINE MIR -40 168 92 400 315 34 13 chr6 111689528 111689677 -77589877 + MIR SINE MIR 36 187 -75 679 330 36 0 chr6 111690233 111690454 -77589100 + MIR SINE MIR 9 237 -25 1191 121 0 0 chr6 111691841 111692014 -77587540 - Tigger3(Golem) DNA MER2_type 0 3029 2857 361 177 85 43 chr6 111692004 111692145 -77587409 + Tigger3(Golem) DNA MER2_type 2298 2444 -585 * 225 162 0 0 chr6 111692159 111692196 -77587358 + Tigger3(Golem) DNA MER2_type 2871 2907 -122 * 5108 131 35 62 chr6 111692189 111693272 -77586282 - Tigger3b DNA MER2_type -177 1054 1 265 250 0 14 chr6 111693929 111694001 -77585553 - LTR33A LTR ERVL 0 523 453 208 276 174 0 chr6 111694469 111694567 -77584987 - L2 LINE L2 0 3313 3199 349 206 214 0 chr6 111695199 111695325 -77584229 + L1ME4a LINE L1 5965 6117 -4 2284 113 0 0 chr6 111695435 111695745 -77583809 + AluSx SINE Alu 3 312 0 2573 48 3 0 chr6 111696675 111696985 -77582569 + AluY SINE Alu 1 311 0 1170 165 23 8 chr6 111697041 111697302 -77582252 - L1MA4A LINE L1 0 6303 6039 1341 171 7 14 chr6 111697748 111698029 -77581525 - L1 LINE L1 -1935 4211 3933 448 205 29 95 chr6 111698031 111698241 -77581313 + L1 LINE L1 4217 4412 -1734 1282 91 16 16 chr6 111698242 111698260 -77581294 + AluY SINE Alu 117 134 -177 2424 70 10 3 chr6 111698260 111698562 -77580992 + AluY SINE Alu 1 304 -7 1282 91 16 16 chr6 111698562 111698730 -77580824 + AluY SINE Alu 133 303 -8 589 230 0 0 chr6 111698733 111698872 -77580682 + L1 LINE L1 4424 4562 -1584 384 331 101 92 chr6 111698973 111699452 -77580102 - L2 LINE L2 0 3272 2790 1097 257 214 46 chr6 111699589 111700513 -77579041 - L2 LINE L2 0 3313 2230 282 304 10 97 chr6 111701198 111701405 -77578149 - MIR SINE MIR -41 221 33 2882 6 0 0 chr6 111702379 111702690 -77576864 + AluYb8 SINE Alu 1 311 -7 326 239 21 0 chr6 111703128 111703204 -77576350 + L2 LINE L2 3188 3308 -5 445 262 37 0 chr6 111704622 111704729 -77574825 - L2 LINE L2 -7 3306 3196 1970 190 14 8 chr6 111705262 111705625 -77573929 - MLT1A1 LTR MaLR 0 365 1 421 349 72 47 chr6 111705638 111705916 -77573638 + L2 LINE L2 2988 3272 0 22 0 0 0 chr6 111707052 111707074 -77572480 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 111707105 111707133 -77572421 + AT_rich Low_complexity Low_complexity 1 28 0 180 200 0 0 chr6 111707149 111707189 -77572365 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 227 267 77 0 chr6 111707378 111707451 -77572103 + MIR SINE MIR 74 150 -65 249 211 35 105 chr6 111707575 111707689 -77571865 + Charlie8 DNA MER1_type 227 2408 -9 1039 224 81 32 chr6 111708079 111708427 -77571127 + MLT1A1 LTR MaLR 1 365 0 235 321 57 43 chr6 111708463 111708603 -77570951 - L2 LINE L2 -214 3058 2917 1121 298 147 7 chr6 111710410 111710884 -77568670 - L2 LINE L2 -1 3271 2741 793 133 60 0 chr6 111711417 111711567 -77567987 + LTR47A LTR ERVL 294 452 0 206 79 0 26 chr6 111711597 111711635 -77567919 + (TTATA)n Simple_repeat Simple_repeat 2 38 0 943 168 0 13 chr6 111711640 111711789 -77567765 - FRAM SINE Alu -18 158 12 300 284 46 18 chr6 111711790 111711899 -77567655 - L2 LINE L2 -12 3301 3190 295 251 135 61 chr6 111712997 111713160 -77566394 - MER5A DNA MER1_type -5 184 10 2217 126 0 0 chr6 111713314 111713616 -77565938 - AluSx SINE Alu -10 302 1 556 267 139 11 chr6 111713661 111713848 -77565706 - MIR SINE MIR -43 219 9 702 261 11 11 chr6 111714580 111714760 -77564794 + MIR SINE MIR 83 262 0 381 312 68 34 chr6 111714829 111715034 -77564520 - MIR SINE MIR -30 232 21 270 286 32 71 chr6 111715169 111715323 -77564231 - L2 LINE L2 -228 3044 2897 1270 259 9 32 chr6 111715628 111715975 -77563579 + MER58B DNA MER1_type 2 340 -1 385 233 52 43 chr6 111716185 111716301 -77563253 + L2 LINE L2 3151 3267 -5 21 57 0 0 chr6 111717542 111717577 -77561977 + AT_rich Low_complexity Low_complexity 1 35 0 416 239 67 15 chr6 111717723 111717857 -77561697 - L2 LINE L2 -4 3309 3169 21 0 0 0 chr6 111719039 111719060 -77560494 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr6 111719697 111719726 -77559828 + AT_rich Low_complexity Low_complexity 1 29 0 32 43 0 0 chr6 111719887 111719933 -77559621 + AT_rich Low_complexity Low_complexity 1 46 0 1088 271 79 42 chr6 111720009 111720493 -77559061 + L1ME4a LINE L1 5402 5919 -202 1672 181 24 45 chr6 111720493 111720868 -77558686 - MLT1A2 LTR MaLR -4 370 4 1088 271 79 42 chr6 111720868 111721055 -77558499 + L1ME4a LINE L1 5919 6098 -23 402 204 99 88 chr6 111721374 111721555 -77557999 - MIR SINE MIR -42 220 38 223 232 0 85 chr6 111723049 111723131 -77556423 - L2 LINE L2 -1 3312 3238 222 229 17 34 chr6 111723363 111723481 -77556073 + (TATATG)n Simple_repeat Simple_repeat 1 116 0 453 333 21 27 chr6 111723997 111724183 -77555371 - L2 LINE L2 -192 3080 2896 1608 150 45 117 chr6 111724184 111724604 -77554950 - MLT1B LTR MaLR 0 390 1 1526 227 46 61 chr6 111729149 111729690 -77549864 - LTR55 LTR ERV -15 533 1 568 319 47 50 chr6 111730480 111730844 -77548710 - MLT1K LTR MaLR -138 450 88 2893 183 14 30 chr6 111731197 111731765 -77547789 + MER89 LTR ERV1 1 559 0 223 355 131 0 chr6 111731917 111732024 -77547530 - MIR SINE MIR -108 154 34 395 289 78 14 chr6 111732359 111732501 -77547053 + MIR SINE MIR 85 235 -27 1128 246 62 32 chr6 111733477 111734006 -77545548 + L2 LINE L2 2766 3312 -1 2534 70 0 3 chr6 111734919 111735231 -77544323 - AluY SINE Alu 0 311 1 225 231 15 31 chr6 111735424 111735489 -77544065 + MER77 LTR ERV1 227 290 -315 1557 134 10 48 chr6 111735509 111735800 -77543754 + MLT1A1 LTR MaLR 37 316 -49 1655 167 78 52 chr6 111735805 111736231 -77543323 + MSTB2 LTR MaLR 21 457 0 359 130 0 0 chr6 111736231 111736285 -77543269 + MLT1A1 LTR MaLR 312 365 0 1279 206 12 8 chr6 111736285 111736542 -77543012 + MER77 LTR ERV1 286 543 -62 496 281 9 55 chr6 111736879 111737096 -77542458 - ERVL LTR ERVL -1223 4541 4335 398 348 13 6 chr6 111737104 111737262 -77542292 + L2 LINE L2 2845 3003 -269 344 155 87 6 chr6 111737447 111737670 -77541884 + (TA)n Simple_repeat Simple_repeat 1 241 0 184 276 105 0 chr6 111737674 111737750 -77541804 - L2 LINE L2 -1281 2033 1950 604 285 135 19 chr6 111737778 111738038 -77541516 - MLT1K LTR MaLR -188 400 111 1739 176 0 27 chr6 111738075 111738371 -77541183 + AluJb SINE Alu 1 288 -24 209 161 0 0 chr6 111738741 111738772 -77540782 + (TG)n Simple_repeat Simple_repeat 2 32 0 378 216 16 92 chr6 111739095 111739226 -77540328 - MIR SINE MIR -45 163 20 414 101 0 0 chr6 111739461 111739530 -77540024 + (TC)n Simple_repeat Simple_repeat 2 70 0 410 303 127 16 chr6 111740836 111741411 -77538143 - L1M4 LINE L1 -2221 3925 3277 284 366 187 11 chr6 111742030 111742065 -77537489 - L2 LINE L2 -557 2757 2729 457 132 13 0 chr6 111742065 111742141 -77537413 + MADE1 DNA Mariner 1 77 -3 284 366 187 11 chr6 111742141 111742389 -77537165 - L2 LINE L2 -585 2729 2424 250 360 139 47 chr6 111742927 111742957 -77536597 + L2 LINE L2 2898 2924 -348 1293 187 116 33 chr6 111742957 111743294 -77536260 - MLT1A1 LTR MaLR 0 365 1 250 360 139 47 chr6 111743294 111743602 -77535952 + L2 LINE L2 2924 3267 -5 28 71 0 0 chr6 111743635 111743691 -77535863 + AT_rich Low_complexity Low_complexity 1 56 0 300 137 0 0 chr6 111743743 111743794 -77535760 + (TG)n Simple_repeat Simple_repeat 1 51 0 202 249 54 0 chr6 111744762 111744838 -77534716 - MIR SINE MIR -91 117 34 216 158 0 0 chr6 111745377 111745415 -77534139 + A-rich Low_complexity Low_complexity 1 38 0 458 242 221 7 chr6 111746575 111746724 -77532830 + MER5A DNA MER1_type 9 189 0 321 256 8 17 chr6 111750169 111750286 -77529268 + GA-rich Low_complexity Low_complexity 2 117 0 213 196 0 0 chr6 111750286 111750332 -77529222 + (CAG)n Simple_repeat Simple_repeat 3 48 0 423 100 0 0 chr6 111750679 111750749 -77528805 + (CGG)n Simple_repeat Simple_repeat 1 70 0 561 88 0 0 chr6 111750850 111750930 -77528624 + (CAG)n Simple_repeat Simple_repeat 3 82 0 23 0 0 0 chr6 111751192 111751215 -77528339 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 111751910 111751931 -77527623 + AT_rich Low_complexity Low_complexity 1 21 0 210 176 20 0 chr6 111752073 111752124 -77527430 + GA-rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr6 111753567 111753589 -77525965 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 111754927 111754948 -77524606 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 111759475 111759503 -77520051 + GC_rich Low_complexity Low_complexity 1 28 0 230 186 34 0 chr6 111760832 111760891 -77518663 + (CCCCG)n Simple_repeat Simple_repeat 3 63 0 237 211 39 0 chr6 111761439 111761491 -77518063 + CT-rich Low_complexity Low_complexity 5 58 0 319 341 48 39 chr6 111762376 111762584 -77516970 + MIR SINE MIR 2 211 -51 1550 178 133 0 chr6 111762665 111762929 -77516625 - AluJo SINE Alu -2 300 2 7579 148 37 13 chr6 111765858 111767557 -77511997 + L1MA8 LINE L1 4045 5702 -589 324 0 0 0 chr6 111767557 111767593 -77511961 + (CA)n Simple_repeat Simple_repeat 2 37 0 7579 148 37 13 chr6 111767593 111767984 -77511570 + L1MA8 LINE L1 5702 6188 -103 2045 78 4 11 chr6 111767984 111768252 -77511302 - AluY SINE Alu -5 306 41 7579 148 37 13 chr6 111768252 111768349 -77511205 + L1MA8 LINE L1 6188 6281 -10 2637 53 0 0 chr6 111768592 111768895 -77510659 + AluY SINE Alu 1 303 -8 21 0 0 0 chr6 111769363 111769384 -77510170 + AT_rich Low_complexity Low_complexity 1 21 0 432 288 72 68 chr6 111770139 111770375 -77509179 + MLT1H LTR MaLR 1 237 -312 232 256 122 0 chr6 111770533 111770623 -77508931 + MLT1H LTR MaLR 445 545 -4 326 339 59 8 chr6 111771584 111771702 -77507852 - MLT1K LTR MaLR -398 190 67 1512 209 70 59 chr6 111772871 111773359 -77506195 - MLT2B1 LTR ERVL -27 493 1 7083 136 55 16 chr6 111773359 111773443 -77506111 - ERVL LTR ERVL 0 5757 5678 2379 159 68 22 chr6 111773443 111773852 -77505702 - MSTA LTR MaLR 0 428 1 7083 136 55 16 chr6 111773852 111775107 -77504447 - ERVL LTR ERVL -79 5678 4289 2041 117 20 7 chr6 111775682 111775982 -77503572 - AluJb SINE Alu -8 304 1 1088 255 80 21 chr6 111776454 111776791 -77502763 - L2 LINE L2 -4 3309 2953 348 184 385 0 chr6 111776884 111776993 -77502561 - L2 LINE L2 -528 2786 2636 285 302 95 32 chr6 111777392 111777518 -77502036 + MER5A DNA MER1_type 46 179 -10 5810 27 0 2 chr6 111777835 111778468 -77501086 - L1PA4 LINE L1 0 6155 5524 194 320 93 0 chr6 111778472 111778547 -77501007 - MIR SINE MIR -56 152 71 21 36 0 0 chr6 111778684 111778712 -77500842 + AT_rich Low_complexity Low_complexity 1 28 0 242 303 72 90 chr6 111778883 111779173 -77500381 + MLT1I LTR MaLR 92 376 -33 831 255 36 0 chr6 111779880 111780072 -77499482 - MER63A DNA MER1_type -10 200 2 22 35 0 0 chr6 111780105 111780134 -77499420 + AT_rich Low_complexity Low_complexity 1 29 0 222 174 0 0 chr6 111780812 111780858 -77498696 + (TA)n Simple_repeat Simple_repeat 1 46 0 285 245 117 0 chr6 111781553 111781647 -77497907 - MER103 DNA DNA -10 156 52 9271 27 1 1 chr6 111782170 111783975 -77495579 + L1PA3 LINE L1 4350 6154 -1 22 0 0 0 chr6 111784582 111784604 -77494950 + AT_rich Low_complexity Low_complexity 1 22 0 1751 170 14 3 chr6 111784956 111785238 -77494316 + AluJb SINE Alu 1 285 -27 228 111 0 0 chr6 111785246 111785282 -77494272 + (CATA)n Simple_repeat Simple_repeat 4 39 0 2308 207 83 19 chr6 111785869 111786401 -77493153 + Cheshire DNA MER1_type 2 567 -1853 2107 152 0 9 chr6 111786405 111786720 -77492834 + AluSx SINE Alu 1 312 0 7878 164 85 19 chr6 111786735 111788320 -77491234 + Cheshire DNA MER1_type 731 2420 0 968 250 35 4 chr6 111788353 111788581 -77490973 + MIR SINE MIR 8 242 -20 431 123 65 18 chr6 111788813 111788983 -77490571 + (TA)n Simple_repeat Simple_repeat 2 179 0 912 228 6 6 chr6 111789188 111789355 -77490199 - FAM SINE Alu -8 167 1 225 0 0 0 chr6 111790058 111790083 -77489471 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 668 327 139 27 chr6 111792307 111792855 -77486699 - L2 LINE L2 -343 2971 2363 813 169 0 0 chr6 111793988 111794112 -77485442 - FRAM SINE Alu -53 123 1 840 93 0 0 chr6 111795206 111795314 -77484240 + AluSg SINE Alu 1 108 -202 1698 109 0 9 chr6 111795343 111795573 -77483981 + AluSg/x SINE Alu 80 307 -5 190 164 15 164 chr6 111795574 111795641 -77483913 - MIR3 SINE MIR -27 181 125 27 29 0 0 chr6 111797062 111797096 -77482458 + AT_rich Low_complexity Low_complexity 1 34 0 961 289 92 35 chr6 111798405 111799511 -77480043 - L1ME LINE L1 -362 5808 4633 328 189 100 44 chr6 111799727 111799817 -77479737 - MIR SINE MIR -2 260 166 519 184 11 0 chr6 111799823 111799910 -77479644 - L2 LINE L2 0 3313 3226 458 305 76 33 chr6 111800020 111800444 -77479110 - L1MEc LINE L1 -840 1736 1257 2019 204 82 32 chr6 111800480 111800638 -77478916 + MLT1F1 LTR MaLR 5 154 -413 1406 203 87 81 chr6 111800638 111800715 -77478839 + MLT2B1 LTR ERVL 1 76 -444 1970 145 7 0 chr6 111800715 111801005 -77478549 - AluSc SINE Alu -17 292 1 1406 203 87 81 chr6 111801005 111801444 -77478110 + MLT2B1 LTR ERVL 76 520 0 2019 204 82 32 chr6 111801444 111801819 -77477735 + MLT1F1 LTR MaLR 154 565 -2 192 222 44 0 chr6 111801820 111801865 -77477689 + L2 LINE L2 3263 3309 -4 180 0 0 0 chr6 111801891 111801911 -77477643 + (GA)n Simple_repeat Simple_repeat 1 20 0 1675 172 0 56 chr6 111802572 111802892 -77476662 + AluJb SINE Alu 1 302 -10 1395 184 0 0 chr6 111803768 111803991 -77475563 + MER58A DNA MER1_type 1 223 -1 1768 143 11 0 chr6 111805038 111805303 -77474251 + AluJb SINE Alu 34 301 -11 2151 132 0 0 chr6 111806242 111806552 -77473002 + AluSx SINE Alu 1 310 -2 793 150 15 15 chr6 111807210 111807343 -77472211 + FLAM_C SINE Alu 1 133 0 2449 141 16 0 chr6 111808842 111809226 -77470328 - MLT1B LTR MaLR 0 390 1 423 202 292 0 chr6 111809298 111809458 -77470096 + L1MC4 LINE L1 7847 8041 -1 1880 133 42 3 chr6 111809487 111809772 -77469782 - AluJo SINE Alu -16 296 1 222 347 102 10 chr6 111811157 111811255 -77468299 + MIR SINE MIR 39 145 -63 312 325 79 0 chr6 111812980 111813106 -77466448 - MIR SINE MIR -64 144 26 1458 170 10 42 chr6 111813162 111813451 -77466103 - MSTB2 LTR MaLR -2 455 176 668 325 126 22 chr6 111813492 111813904 -77465650 - L2 LINE L2 0 3313 2859 510 243 90 54 chr6 111813915 111814025 -77465529 + L1MC4a LINE L1 5584 5586 -584 1581 94 0 0 chr6 111814025 111814227 -77465327 + AluSg/x SINE Alu 96 297 -13 510 243 90 54 chr6 111814227 111814443 -77465111 + L1MC4a LINE L1 5586 5793 -377 889 256 169 26 chr6 111816581 111817059 -77462495 - L2 LINE L2 0 3313 2772 206 328 45 102 chr6 111819430 111819607 -77459947 + L2 LINE L2 3098 3264 -8 245 217 289 0 chr6 111821570 111821653 -77457901 - L2 LINE L2 -21 3251 3145 6941 55 13 1 chr6 111821801 111822754 -77456800 - L1PA7 LINE L1 -20 6134 5171 403 317 70 48 chr6 111822837 111823108 -77456446 - L2 LINE L2 -529 2785 2509 919 140 140 30 chr6 111823471 111823671 -77455883 + MER31A LTR ERV1 243 464 -21 581 305 147 8 chr6 111823879 111824259 -77455295 - L1MC4a LINE L1 -1882 5926 5494 336 253 102 102 chr6 111824404 111824708 -77454846 - L1MC4a LINE L1 -1312 4834 4531 185 355 39 26 chr6 111824967 111825122 -77454432 + L2 LINE L2 2827 2983 -289 2378 78 0 13 chr6 111825977 111826285 -77453269 + AluY SINE Alu 1 304 -7 43531 41 4 2 chr6 111826293 111832434 -77447120 + L1PA3 LINE L1 1 6154 -1 271 254 14 0 chr6 111834347 111834418 -77445136 - L1ME LINE L1 -500 5621 5550 303 315 39 31 chr6 111834469 111834599 -77444955 - L1ME LINE L1 -906 5453 5323 180 322 102 0 chr6 111834666 111834725 -77444829 - L2 LINE L2 -1035 2279 2215 24 53 0 0 chr6 111835722 111835760 -77443794 + AT_rich Low_complexity Low_complexity 1 38 0 402 21 0 0 chr6 111836415 111836462 -77443092 + (CA)n Simple_repeat Simple_repeat 2 48 0 1732 90 0 0 chr6 111837608 111837831 -77441723 - AluSg SINE Alu -87 223 1 288 250 223 71 chr6 111838614 111838910 -77440644 + LTR16A1 LTR ERVL 78 418 -39 323 284 251 21 chr6 111839049 111839383 -77440171 + L2 LINE L2 2861 3271 -1 341 214 36 57 chr6 111839383 111839523 -77440031 + L1ME4a LINE L1 5982 6118 -3 2150 119 0 0 chr6 111839881 111840176 -77439378 + AluSx SINE Alu 2 296 -16 408 232 27 89 chr6 111840521 111840633 -77438921 + L2 LINE L2 3207 3311 -2 1034 221 31 17 chr6 111840679 111840969 -77438585 + L1MC4a LINE L1 5311 5604 -2204 1321 229 85 9 chr6 111841037 111841460 -77438094 + L1MC4a LINE L1 5591 6045 -1763 25 0 0 0 chr6 111842980 111843005 -77436549 + AT_rich Low_complexity Low_complexity 1 25 0 23 86 0 0 chr6 111843554 111843612 -77435942 + AT_rich Low_complexity Low_complexity 1 58 0 2102 126 0 3 chr6 111843933 111844235 -77435319 - AluSq SINE Alu -12 301 1 31 26 0 0 chr6 111844709 111844747 -77434807 + AT_rich Low_complexity Low_complexity 1 38 0 2315 113 3 0 chr6 111844895 111845205 -77434349 + AluSp SINE Alu 1 311 -2 352 318 95 52 chr6 111845349 111845793 -77433761 + L1MEd LINE L1 308 770 -5349 945 180 0 6 chr6 111845873 111846045 -77433509 + AluSg/x SINE Alu 129 299 -11 23 0 0 0 chr6 111846224 111846247 -77433307 + AT_rich Low_complexity Low_complexity 1 23 0 751 138 0 0 chr6 111846247 111846356 -77433198 + FRAM SINE Alu 43 151 -25 261 365 229 8 chr6 111849119 111849368 -77430186 + L2 LINE L2 2958 3261 -11 884 73 0 0 chr6 111849906 111850016 -77429538 + AluSg/x SINE Alu 182 291 -18 2800 10 0 0 chr6 111851113 111851417 -77428137 + AluYb8 SINE Alu 1 304 -14 971 250 71 47 chr6 111851805 111852022 -77427532 - L1ME2 LINE L1 -47 6117 5907 2345 164 25 25 chr6 111852022 111852454 -77427100 + Tigger2a DNA MER2_type 3 434 0 971 250 71 47 chr6 111852454 111852565 -77426989 - L1ME2 LINE L1 -257 5907 5800 15453 132 28 45 chr6 111852565 111852644 -77426910 - Tigger2 DNA MER2_type 0 2718 2639 2029 116 36 0 chr6 111852644 111852920 -77426634 + AluSx SINE Alu 12 297 -15 15453 132 28 45 chr6 111852920 111854406 -77425148 - Tigger2 DNA MER2_type -79 2639 1129 1680 169 46 23 chr6 111854406 111854708 -77424846 + AluJo SINE Alu 1 309 -3 15453 132 28 45 chr6 111854708 111854751 -77424803 - Tigger2 DNA MER2_type -1589 1129 1087 225 94 0 0 chr6 111854751 111854783 -77424771 + (AAATG)n Simple_repeat Simple_repeat 5 36 0 15453 132 28 45 chr6 111854783 111855936 -77423618 - Tigger2 DNA MER2_type -1631 1087 2 971 250 71 47 chr6 111855936 111855986 -77423568 - L1ME2 LINE L1 -364 5800 5729 1278 191 79 8 chr6 111855995 111856369 -77423185 - L1ME2 LINE L1 -595 5571 5175 1981 236 32 30 chr6 111856554 111857084 -77422470 + L1ME1 LINE L1 5521 6051 -115 2294 148 54 0 chr6 111857954 111858360 -77421194 + MSTA LTR MaLR 1 428 0 1533 148 53 14 chr6 111858561 111858844 -77420710 + L1MD2 LINE L1 6039 6332 -27 2082 135 0 22 chr6 111858896 111859215 -77420339 + AluJb SINE Alu 1 312 0 300 292 83 12 chr6 111859890 111860150 -77419404 + L1MC4a LINE L1 5209 5487 -634 1889 217 86 17 chr6 111860165 111860630 -77418924 + LTR40a LTR ERVL 23 519 0 465 282 112 49 chr6 111860682 111861111 -77418443 + L1MC4a LINE L1 5556 6015 -147 231 286 16 0 chr6 111861657 111861720 -77417834 - L2 LINE L2 -5 3308 3245 201 132 75 19 chr6 111863234 111863287 -77416267 + G-rich Low_complexity Low_complexity 6 61 0 24 0 0 0 chr6 111863335 111863359 -77416195 + GC_rich Low_complexity Low_complexity 1 24 0 280 120 43 33 chr6 111863589 111863681 -77415873 + (CGGGG)n Simple_repeat Simple_repeat 5 97 0 2213 59 37 4 chr6 111864191 111864464 -77415090 - AluSc SINE Alu -24 285 4 23 0 0 0 chr6 111864654 111864677 -77414877 + AT_rich Low_complexity Low_complexity 1 23 0 10824 150 41 33 chr6 111864687 111867719 -77411835 - L1MA4 LINE L1 -12 6288 3203 939 250 4 4 chr6 111867714 111867942 -77411612 + L1MD3 LINE L1 7732 7959 -36 * 227 167 0 0 chr6 111867956 111868010 -77411544 + L1MD3 LINE L1 7942 7995 0 1438 237 120 15 chr6 111868137 111868602 -77410952 - L1ME3A LINE L1 -4 6166 5653 193 71 0 48 chr6 111869682 111869724 -77409830 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1737 126 92 7 chr6 111869741 111870012 -77409542 - AluSg SINE Alu -16 294 1 2091 127 0 0 chr6 111870014 111870313 -77409241 - AluSx SINE Alu -13 299 1 413 286 129 7 chr6 111870320 111870467 -77409087 - MIR3 SINE MIR -14 194 30 312 252 161 34 chr6 111870588 111870744 -77408810 + MIR SINE MIR 34 212 -50 23 0 0 0 chr6 111870775 111870798 -77408756 + AT_rich Low_complexity Low_complexity 1 23 0 437 369 31 6 chr6 111870830 111870990 -77408564 - MIR3 SINE MIR -12 196 33 26 0 0 0 chr6 111871921 111871947 -77407607 + AT_rich Low_complexity Low_complexity 1 26 0 5991 48 4 1 chr6 111872323 111873065 -77406489 + L1PA7 LINE L1 5409 6152 -2 724 152 6 6 chr6 111973806 111973977 -77305577 + (CATTA)n Simple_repeat Simple_repeat 2 172 0 355 274 0 0 chr6 111973978 111974102 -77305452 + (CATTC)n Satellite Satellite 4 127 0 627 188 0 0 chr6 111974115 111974291 -77305263 + (CATTC)n Satellite Satellite 1 176 0 501 143 0 82 chr6 111974310 111974506 -77305048 + (CATTC)n Satellite Satellite 1 180 0 752 142 0 27 chr6 111974517 111974700 -77304854 + (CATTC)n Satellite Satellite 2 179 0 618 140 0 37 chr6 111974734 111974898 -77304656 + (CATTC)n Satellite Satellite 4 161 0 836 125 0 27 chr6 111974914 111975098 -77304456 + (CATTC)n Satellite Satellite 2 180 0 1068 148 0 3 chr6 111975119 111975429 -77304125 + (CATTC)n Satellite Satellite 2 310 0 1116 107 0 0 chr6 111975444 111975797 -77303757 + (CATTC)n Satellite Satellite 1 353 0 1068 120 2 13 chr6 111975834 111976383 -77303171 + (CATTC)n Satellite Satellite 1 543 0 1134 147 2 12 chr6 111976399 111976892 -77302662 + (CATTC)n Satellite Satellite 1 488 0 990 122 0 0 chr6 111976931 111977111 -77302443 + (CATTC)n Satellite Satellite 1 180 0 629 145 0 26 chr6 111977149 111977301 -77302253 + (CATTC)n Satellite Satellite 4 151 0 934 117 6 6 chr6 111977320 111977500 -77302054 + (CATTC)n Satellite Satellite 1 180 0 1044 120 0 0 chr6 111977511 111977725 -77301829 + (CATTC)n Satellite Satellite 1 214 0 1206 116 2 11 chr6 111977736 111978278 -77301276 + (CATTC)n Satellite Satellite 1 536 0 1122 88 3 32 chr6 111978292 111978655 -77300899 + (CATTC)n Satellite Satellite 4 353 0 512 145 8 0 chr6 111978670 111978787 -77300767 + (CATTC)n Satellite Satellite 2 119 0 837 93 0 72 chr6 111978813 111979007 -77300547 + (CATTC)n Satellite Satellite 1 180 0 1132 78 6 6 chr6 111979028 111979207 -77300347 + (CATTC)n Satellite Satellite 2 180 0 737 133 4 20 chr6 111979218 111979472 -77300082 + (CATTC)n Satellite Satellite 1 249 0 1140 91 0 0 chr6 111979487 111979663 -77299891 + (CATTC)n Satellite Satellite 2 177 0 719 148 0 27 chr6 111979702 111979885 -77299669 + (CATTC)n Satellite Satellite 2 179 0 1177 75 3 34 chr6 111979901 111980271 -77299283 + (CATTC)n Satellite Satellite 1 359 0 1146 112 0 41 chr6 111980287 111980659 -77298895 + (CATTC)n Satellite Satellite 2 357 0 1281 112 2 3 chr6 111980671 111981276 -77298278 + (CATTC)n Satellite Satellite 1 604 0 311 132 15 0 chr6 111981291 111981359 -77298195 + (CATTC)n Satellite Satellite 2 70 0 180 77 0 0 chr6 111981374 111981400 -77298154 + (CATTC)n Satellite Satellite 1 26 0 990 118 0 0 chr6 111981416 111981586 -77297968 + (CATTC)n Simple_repeat Simple_repeat 2 171 0 249 135 0 0 chr6 111981693 111981745 -77297809 + (CATTC)n Satellite Satellite 5 56 0 891 132 0 0 chr6 111981763 111981937 -77297617 + (CATTC)n Satellite Satellite 5 178 0 912 165 2 0 chr6 111981980 111982527 -77297027 + (CATTC)n Satellite Satellite 1 548 0 1089 106 0 0 chr6 111982547 111982727 -77296827 + (CATTC)n Satellite Satellite 1 180 0 558 154 0 0 chr6 111982743 111982873 -77296681 + (CATTC)n Satellite Satellite 2 131 0 930 140 0 0 chr6 111982888 111983067 -77296487 + (CATTC)n Satellite Satellite 2 180 0 1083 107 0 0 chr6 111983093 111983262 -77296292 + (CATTC)n Satellite Satellite 2 170 0 1111 122 6 4 chr6 111983278 111983780 -77295774 + (CATTC)n Satellite Satellite 1 503 0 872 97 0 59 chr6 111983806 111984057 -77295497 + (CATTC)n Satellite Satellite 1 236 0 972 123 3 2 chr6 111984072 111984709 -77294845 + (CATTC)n Satellite Satellite 1 638 0 870 79 0 61 chr6 111984721 111984955 -77294599 + (CATTC)n Satellite Satellite 1 219 0 950 115 6 0 chr6 111984970 111985144 -77294410 + (CATTC)n Satellite Satellite 2 176 0 1152 89 0 0 chr6 111985163 111985343 -77294211 + (CATTC)n Satellite Satellite 1 180 0 603 146 0 0 chr6 111985359 111985489 -77294065 + (CATTC)n Satellite Satellite 2 131 0 1107 116 0 12 chr6 111985504 111985924 -77293630 + (CATTC)n Satellite Satellite 1 415 0 1176 89 0 0 chr6 111985943 111986123 -77293431 + (CATTC)n Satellite Satellite 1 180 0 288 53 0 0 chr6 111986139 111986177 -77293377 + (CATTC)n Satellite Satellite 2 39 0 1155 122 1 20 chr6 111986203 111987189 -77292365 + (CATTC)n Satellite Satellite 1 967 0 905 114 5 0 chr6 111987204 111987412 -77292142 + (CATTC)n Satellite Satellite 1 209 0 738 153 0 0 chr6 111987424 111987587 -77291967 + (CATTC)n Satellite Satellite 3 165 0 854 123 6 0 chr6 111987615 111987777 -77291777 + (CATTC)n Satellite Satellite 4 166 0 999 128 2 13 chr6 111987792 111988592 -77290962 + (CATTC)n Satellite Satellite 1 791 0 996 129 0 17 chr6 111988607 111989385 -77290169 + (CATTC)n Satellite Satellite 1 764 0 1167 115 1 14 chr6 111989396 111990095 -77289459 + (CATTC)n Satellite Satellite 1 690 0 1155 124 1 11 chr6 111990123 111991022 -77288532 + (CATTC)n Satellite Satellite 1 889 0 930 121 2 44 chr6 111991043 111991497 -77288057 + (CATTC)n Satellite Satellite 1 435 0 1116 146 0 4 chr6 111991508 111992176 -77287378 + (CATTC)n Satellite Satellite 1 665 0 1104 97 0 22 chr6 111992194 111992444 -77287110 + (CATTC)n Satellite Satellite 4 245 0 674 136 0 27 chr6 111992479 111992626 -77286928 + (CATTC)n Satellite Satellite 4 146 0 1209 83 0 0 chr6 111992650 111992830 -77286724 + (CATTC)n Satellite Satellite 1 180 0 723 118 0 0 chr6 111992841 111992976 -77286578 + (CATTC)n Satellite Satellite 2 136 0 309 270 9 0 chr6 111992993 111993108 -77286446 + (CATTC)n Satellite Satellite 4 119 0 189 132 0 0 chr6 111993124 111993162 -77286392 + (CATTT)n Simple_repeat Simple_repeat 1 38 0 631 137 7 7 chr6 111993377 111993516 -77286038 + (CATTA)n Simple_repeat Simple_repeat 1 139 0 585 147 13 6 chr6 111993528 111993685 -77285869 + (CATTA)n Simple_repeat Simple_repeat 2 159 0 313 247 0 0 chr6 111993689 111993778 -77285776 + (CATTC)n Simple_repeat Simple_repeat 4 92 0 395 189 0 33 chr6 111993792 111993945 -77285609 + (CATTA)n Simple_repeat Simple_repeat 2 149 0 204 200 0 0 chr6 111993957 111994027 -77285527 + (CATTC)n Satellite Satellite 2 71 0 617 131 0 26 chr6 111994052 111994205 -77285349 + (CATTC)n Satellite Satellite 2 150 0 443 127 0 45 chr6 111994265 111994375 -77285179 + (CATTC)n Satellite Satellite 2 106 0 1076 84 0 6 chr6 111994390 111994557 -77284997 + (CATTC)n Satellite Satellite 2 167 0 596 158 0 7 chr6 111994659 111994798 -77284756 + (CATTC)n Satellite Satellite 2 139 0 891 142 0 0 chr6 111994810 111994986 -77284568 + (CATTC)n Satellite Satellite 2 177 0 1026 134 0 16 chr6 111995014 111995377 -77284177 + (CATTC)n Satellite Satellite 2 358 0 857 125 0 35 chr6 111995389 111995651 -77283903 + (CATTC)n Satellite Satellite 1 252 0 996 99 6 6 chr6 111995664 111995835 -77283719 + (CATTC)n Satellite Satellite 3 173 0 940 84 0 53 chr6 111995953 111996143 -77283411 + (CATTC)n Satellite Satellite 1 180 0 1146 139 1 17 chr6 111996159 111997281 -77282273 + (CATTC)n Satellite Satellite 1 1104 0 366 167 0 0 chr6 111997292 111997376 -77282178 + (CATTC)n Satellite Satellite 2 85 0 1038 107 0 0 chr6 111997392 111997569 -77281985 + (CATTC)n Satellite Satellite 3 179 0 747 137 6 22 chr6 111997581 111997763 -77281791 + (CATTC)n Satellite Satellite 2 180 0 1119 94 0 0 chr6 111997793 111997973 -77281581 + (CATTC)n Satellite Satellite 1 180 0 1080 133 0 8 chr6 111997989 111998712 -77280842 + (CATTC)n Satellite Satellite 1 717 0 909 140 0 0 chr6 111998724 111998902 -77280652 + (CATTC)n Satellite Satellite 2 179 0 789 126 6 22 chr6 111998914 111999096 -77280458 + (CATTC)n Satellite Satellite 2 180 0 1011 117 0 0 chr6 111999111 111999291 -77280263 + (CATTC)n Satellite Satellite 1 180 0 817 114 0 49 chr6 111999307 111999491 -77280063 + (CATTC)n Satellite Satellite 2 176 0 1104 106 0 0 chr6 111999506 111999685 -77279869 + (CATTC)n Satellite Satellite 2 180 0 981 145 0 22 chr6 111999703 112000058 -77279496 + (CATTC)n Satellite Satellite 4 348 0 314 139 14 0 chr6 112000076 112000148 -77279406 + (CATTC)n Satellite Satellite 2 74 0 864 134 0 0 chr6 112000162 112000333 -77279221 + (CATTC)n Satellite Satellite 4 174 0 447 87 0 0 chr6 112000345 112000414 -77279140 + (CATTC)n Satellite Satellite 2 70 0 1101 132 2 20 chr6 112000449 112001356 -77278198 + (CATTC)n Satellite Satellite 1 889 0 752 130 0 25 chr6 112001390 112001552 -77278002 + (CATTC)n Satellite Satellite 4 161 0 1068 136 2 2 chr6 112001571 112002036 -77277518 + (CATTC)n Satellite Satellite 1 465 0 738 108 0 72 chr6 112002056 112002250 -77277304 + (CATTC)n Satellite Satellite 1 180 0 1158 95 0 0 chr6 112002275 112002454 -77277100 + (CATTC)n Satellite Satellite 1 179 0 1134 102 3 19 chr6 112002468 112002821 -77276733 + (CATTC)n Satellite Satellite 4 348 0 1111 130 3 9 chr6 112002836 112003623 -77275931 + (CATTC)n Satellite Satellite 1 782 0 854 122 0 23 chr6 112003651 112003823 -77275731 + (CATTC)n Satellite Satellite 4 171 0 1116 95 0 0 chr6 112003838 112004066 -77275488 + (CATTC)n Satellite Satellite 1 228 0 1101 101 0 0 chr6 112004087 112004266 -77275288 + (CATTC)n Satellite Satellite 1 179 0 716 153 0 22 chr6 112004278 112004507 -77275047 + (CATTC)n Satellite Satellite 1 223 0 1098 121 2 9 chr6 112004522 112005499 -77274055 + (CATTC)n Satellite Satellite 1 969 0 1134 116 0 18 chr6 112005511 112005768 -77273786 + (CATTC)n Satellite Satellite 2 253 0 1045 115 5 34 chr6 112005789 112006159 -77273395 + (CATTC)n Satellite Satellite 1 360 0 785 125 4 39 chr6 112006185 112006693 -77272861 + (CATTC)n Satellite Satellite 1 490 0 1035 117 0 0 chr6 112006722 112006902 -77272652 + (CATTC)n Satellite Satellite 1 180 0 605 168 7 0 chr6 112006925 112007080 -77272474 + (CATTC)n Satellite Satellite 4 159 0 1160 84 6 0 chr6 112007101 112007280 -77272274 + (CATTC)n Satellite Satellite 1 180 0 1023 120 0 32 chr6 112007301 112007665 -77271889 + (CATTC)n Satellite Satellite 2 353 0 1158 126 0 17 chr6 112007676 112008363 -77271191 + (CATTC)n Satellite Satellite 1 675 0 1222 63 5 5 chr6 112008377 112008604 -77270950 + (CATTC)n Satellite Satellite 1 227 0 1056 119 4 21 chr6 112008650 112009192 -77270362 + (CATTC)n Satellite Satellite 1 532 0 978 117 0 0 chr6 112009204 112009383 -77270171 + (CATTC)n Satellite Satellite 2 180 0 696 157 0 0 chr6 112009399 112009546 -77270008 + (CATTC)n Satellite Satellite 2 148 0 490 152 0 54 chr6 112009572 112009756 -77269798 + (CATTC)n Satellite Satellite 5 178 0 332 296 0 0 chr6 112009774 112009926 -77269628 + (CATAC)n Simple_repeat Simple_repeat 2 153 0 235 269 75 0 chr6 112110408 112110501 -77169053 - L2 LINE L2 -1096 2218 2119 1912 160 0 7 chr6 112110935 112111256 -77168298 + AluSx SINE Alu 1 319 0 487 281 60 12 chr6 112111277 112111444 -77168110 - LTR33 LTR ERVL -40 481 307 22 0 0 0 chr6 112112268 112112290 -77167264 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 112114031 112114059 -77165495 + AT_rich Low_complexity Low_complexity 1 28 0 270 288 79 58 chr6 112115287 112115426 -77164128 + MIR SINE MIR 75 216 -46 265 247 21 0 chr6 112115650 112115747 -77163807 + MER53 DNA DNA 1 99 -90 386 270 119 54 chr6 112115947 112116132 -77163422 + LTR50 LTR ERVL 26 222 -573 396 183 17 78 chr6 112116348 112116463 -77163091 + LTR33A LTR ERVL 416 523 0 217 345 144 35 chr6 112116917 112117146 -77162408 - L3b LINE CR1 -166 1417 1164 24 0 0 0 chr6 112117766 112117790 -77161764 + AT_rich Low_complexity Low_complexity 1 24 0 1774 141 20 7 chr6 112117825 112118124 -77161430 + AluJb SINE Alu 1 303 -9 216 273 26 13 chr6 112118469 112118546 -77161008 + CT-rich Low_complexity Low_complexity 1 78 0 267 326 118 27 chr6 112118637 112118824 -77160730 + MIR SINE MIR 11 214 -48 215 281 125 0 chr6 112118898 112118994 -77160560 + MIR3 SINE MIR 98 205 -3 25 51 0 0 chr6 112120881 112120920 -77158634 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr6 112121756 112121778 -77157776 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 112123809 112123829 -77155725 + (T)n Simple_repeat Simple_repeat 1 20 0 180 77 0 0 chr6 112125473 112125499 -77154055 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 296 214 0 0 chr6 112128805 112128861 -77150693 + L2 LINE L2 3258 3313 0 221 188 12 75 chr6 112129035 112129115 -77150439 + GA-rich Low_complexity Low_complexity 3 77 0 25 90 0 0 chr6 112129767 112129834 -77149720 + AT_rich Low_complexity Low_complexity 1 67 0 25 31 0 0 chr6 112132090 112132122 -77147432 + AT_rich Low_complexity Low_complexity 1 32 0 325 255 47 57 chr6 112132305 112132517 -77147037 - L1MC4a LINE L1 -1877 5931 5722 196 392 31 31 chr6 112134866 112134963 -77144591 - L2 LINE L2 -2 3270 3174 310 369 48 30 chr6 112135183 112135351 -77144203 - L2 LINE L2 -446 2868 2698 221 290 43 32 chr6 112135899 112135992 -77143562 - L2 LINE L2 -272 3000 2907 318 87 0 0 chr6 112138023 112138069 -77141485 + (TG)n Simple_repeat Simple_repeat 1 46 0 1060 161 65 15 chr6 112138981 112139242 -77140312 + MER33 DNA MER1_type 51 324 0 302 269 27 23 chr6 112139647 112139776 -77139778 - MIR SINE MIR -59 149 25 284 353 65 35 chr6 112140249 112140419 -77139135 - L2 LINE L2 -14 3258 3084 1517 229 108 59 chr6 112140443 112141036 -77138518 + MLT1E3 LTR MaLR 3 624 0 653 241 29 6 chr6 112141174 112141344 -77138210 - MER5B DNA MER1_type -1 177 4 22 0 0 0 chr6 112141428 112141450 -77138104 + AT_rich Low_complexity Low_complexity 1 22 0 253 358 37 0 chr6 112141575 112141684 -77137870 + L2 LINE L2 3159 3271 -1 1975 168 0 0 chr6 112142020 112142318 -77137236 + AluJb SINE Alu 1 298 -14 424 279 137 58 chr6 112142388 112142614 -77136940 - MIR SINE MIR -12 250 7 393 152 22 11 chr6 112143964 112144056 -77135498 + GA-rich Low_complexity Low_complexity 1 93 0 460 116 21 11 chr6 112144175 112144270 -77135284 + CT-rich Low_complexity Low_complexity 3 98 0 2327 67 0 0 chr6 112144333 112144664 -77134890 + AluY SINE Alu 1 331 0 183 256 146 12 chr6 112145537 112145619 -77133935 + MIR SINE MIR 48 140 -68 231 36 0 0 chr6 112146134 112146162 -77133392 + (TCCA)n Simple_repeat Simple_repeat 1 28 0 2077 135 51 25 chr6 112147271 112147626 -77131928 + THE1B LTR MaLR 1 364 0 2975 112 26 0 chr6 112147627 112148057 -77131497 + THE1B-int LTR MaLR 2 442 -1138 3700 174 65 31 chr6 112148057 112149002 -77130552 + MER11C LTR ERVK 1 1071 0 8519 105 2 0 chr6 112149006 112150144 -77129410 + THE1B-int LTR MaLR 441 1580 0 2129 136 48 20 chr6 112150146 112150498 -77129056 + THE1B LTR MaLR 3 364 0 5736 117 31 0 chr6 112150498 112151944 -77127610 + L1PA5 LINE L1 4659 6154 0 1176 245 59 31 chr6 112152293 112152717 -77126837 + MER63B DNA MER1_type 1 436 0 391 66 229 0 chr6 112152768 112152829 -77126725 - MLT1C LTR MaLR -1 466 392 * 2372 175 26 22 chr6 112152817 112153275 -77126279 - MLT1C LTR MaLR -11 615 1 298 301 44 9 chr6 112153349 112153462 -77126092 + L2 LINE L2 2938 3054 -218 682 274 93 13 chr6 112153558 112153795 -77125759 + MIR SINE MIR 1 256 -6 220 305 186 8 chr6 112153852 112153970 -77125584 + L2 LINE L2 3129 3267 -5 1357 144 8 17 chr6 112154175 112154411 -77125143 - L1MD1 LINE L1 -7 6629 6396 3215 222 32 45 chr6 112154411 112155373 -77124181 - L1MD1 LINE L1 -661 5975 5002 2485 73 0 6 chr6 112155373 112155686 -77123868 - AluY SINE Alu 0 311 1 3215 222 32 45 chr6 112155686 112155708 -77123846 - L1MD1 LINE L1 -1634 5002 4981 1872 144 0 7 chr6 112155708 112156021 -77123533 - AluSx SINE Alu 0 311 1 3215 222 32 45 chr6 112156021 112156421 -77123133 - L1MD1 LINE L1 -1655 4981 4610 1834 170 3 22 chr6 112156421 112156739 -77122815 + AluSx SINE Alu 1 312 0 3215 222 32 45 chr6 112156739 112156829 -77122725 - L1MD1 LINE L1 -2026 4610 4520 2006 239 84 2 chr6 112156828 112157061 -77122493 - L1MD1 LINE L1 -5993 547 334 * 339 25 0 0 chr6 112157061 112157101 -77122453 + (TG)n Simple_repeat Simple_repeat 1 40 0 2006 239 84 2 chr6 112157101 112157357 -77122197 - L1MD1 LINE L1 -6206 334 18 21 89 0 0 chr6 112157441 112157497 -77122057 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr6 112157635 112157657 -77121897 + AT_rich Low_complexity Low_complexity 1 22 0 347 289 198 20 chr6 112157737 112157934 -77121620 + MIR SINE MIR 19 250 -12 233 296 243 12 chr6 112158749 112158918 -77120636 + L3 LINE CR1 1267 1474 -103 246 105 0 0 chr6 112158958 112158996 -77120558 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 261 215 65 47 chr6 112159469 112159576 -77119978 - MLT1K LTR MaLR -3 585 477 549 313 56 49 chr6 112160494 112160782 -77118772 + L2 LINE L2 3021 3310 -3 22 35 0 0 chr6 112164417 112164446 -77115108 + AT_rich Low_complexity Low_complexity 1 29 0 1847 119 48 10 chr6 112164626 112164919 -77114635 - AluSx SINE Alu -8 304 1 230 222 22 0 chr6 112165342 112165387 -77114167 + polypyrimidine Low_complexity Low_complexity 1 46 0 6104 175 26 9 chr6 112166638 112168279 -77111275 - L1MC1 LINE L1 -16 6317 4663 21 0 0 0 chr6 112168279 112168300 -77111254 + AT_rich Low_complexity Low_complexity 1 21 0 1026 256 80 74 chr6 112168412 112169098 -77110456 + L2 LINE L2 2598 3299 -14 2952 235 78 32 chr6 112169102 112170195 -77109359 + HAL1b LINE L1 205 1347 -1 2344 331 75 43 chr6 112170407 112172323 -77107231 - HAL1 LINE L1 -113 2394 418 277 341 64 45 chr6 112173277 112173635 -77105919 + L2 LINE L2 2949 3313 0 396 300 50 71 chr6 112175184 112175424 -77104130 + MER102b DNA MER1_type 107 341 0 361 234 227 0 chr6 112176105 112176233 -77103321 + MIR SINE MIR 28 184 -78 22 35 0 0 chr6 112177151 112177180 -77102374 + AT_rich Low_complexity Low_complexity 1 29 0 189 147 0 0 chr6 112177692 112177726 -77101828 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 210 374 35 26 chr6 112179265 112179380 -77100174 + MIR SINE MIR 16 131 -77 301 333 91 41 chr6 112179731 112179950 -77099604 + L2 LINE L2 450 679 -2635 419 314 84 81 chr6 112181500 112181923 -77097631 + L3 LINE CR1 142 569 -1008 1841 164 3 10 chr6 112181923 112182227 -77097327 + AluJb SINE Alu 2 303 -9 419 314 84 81 chr6 112182227 112182300 -77097254 + L3 LINE CR1 569 640 -937 363 261 86 108 chr6 112182342 112182564 -77096990 - MIR SINE MIR -14 248 32 414 323 25 19 chr6 112182565 112182726 -77096828 - MIR SINE MIR -81 181 20 224 313 61 61 chr6 112182724 112182887 -77096667 + L3 LINE CR1 751 913 -664 * 521 290 65 59 chr6 112182887 112183073 -77096481 + MER5A DNA MER1_type 1 187 -2 196 121 30 0 chr6 112183223 112183256 -77096298 + L3 LINE CR1 1267 1300 -277 219 310 43 43 chr6 112183502 112183618 -77095936 + L3 LINE CR1 1417 1532 -45 24 32 0 0 chr6 112183701 112183732 -77095822 + AT_rich Low_complexity Low_complexity 1 31 0 348 188 115 31 chr6 112184777 112184873 -77094681 + MER58 DNA MER1_type 6 109 -106 357 319 8 0 chr6 112185227 112185346 -77094208 - L2 LINE L2 -965 2349 2230 254 357 54 0 chr6 112185532 112185644 -77093910 + L2 LINE L2 3155 3272 0 222 254 127 45 chr6 112186236 112186346 -77093208 + MIR3 SINE MIR 13 131 -77 215 273 26 39 chr6 112186353 112186430 -77093124 + L2 LINE L2 3188 3263 -9 192 356 0 41 chr6 112186709 112186782 -77092772 - MIR SINE MIR -180 82 13 301 310 31 23 chr6 112189077 112189206 -77090348 - L1M LINE L1 -2382 5426 5297 700 192 49 45 chr6 112189244 112189468 -77090086 - Charlie1 DNA MER1_type -124 2637 2413 339 214 39 117 chr6 112189468 112189622 -77089932 - L1MC/D LINE L1 -1988 5820 5679 204 333 0 0 chr6 112190192 112190258 -77089296 - MIR SINE MIR -122 140 75 2393 241 103 30 chr6 112190883 112190995 -77088559 + L1MC4 LINE L1 6469 6571 -1237 234 0 0 0 chr6 112190995 112191021 -77088533 + (CA)n Simple_repeat Simple_repeat 2 27 0 2393 241 103 30 chr6 112191021 112192106 -77087448 + L1MC4 LINE L1 6571 7713 -95 421 326 104 9 chr6 112192828 112193058 -77086496 - MIR SINE MIR 0 262 11 364 252 25 17 chr6 112193806 112193925 -77085629 + MIR SINE MIR 143 262 0 463 251 144 41 chr6 112194548 112194630 -77084924 + MER58C DNA MER1_type 1 73 -2347 2324 74 0 3 chr6 112194630 112194927 -77084627 + AluY SINE Alu 1 296 -15 463 251 144 41 chr6 112194927 112195039 -77084515 + MER58C DNA MER1_type 73 215 0 288 362 7 36 chr6 112195041 112195179 -77084375 - MIR3 SINE MIR -50 158 25 26 30 0 0 chr6 112195662 112195695 -77083859 + AT_rich Low_complexity Low_complexity 1 33 0 1987 125 0 4 chr6 112197582 112197863 -77081691 + AluSx SINE Alu 1 280 -32 186 43 0 0 chr6 112197866 112197889 -77081665 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2588 51 0 3 chr6 112200020 112200331 -77079223 - AluY SINE Alu -1 310 1 212 224 24 12 chr6 112200579 112200664 -77078890 + (TTA)n Simple_repeat Simple_repeat 1 86 0 2531 232 48 56 chr6 112200806 112201917 -77077637 - L2 LINE L2 0 3313 2202 180 111 0 0 chr6 112204052 112204079 -77075475 + (T)n Simple_repeat Simple_repeat 1 27 0 184 309 274 0 chr6 112204967 112205051 -77074503 + L2 LINE L2 3165 3271 -1 404 335 13 0 chr6 112208512 112208670 -77070884 - MIR SINE MIR -16 246 87 626 289 30 15 chr6 112208670 112208871 -77070683 - MER63A DNA MER1_type 0 210 7 841 173 50 54 chr6 112209416 112209694 -77069860 + L1MC5 LINE L1 7653 7929 -32 2352 90 3 3 chr6 112209972 112210282 -77069272 - AluSx SINE Alu -2 310 1 2111 117 3 0 chr6 112210604 112210887 -77068667 + AluSg SINE Alu 1 284 -26 203 113 65 0 chr6 112211002 112211064 -77068490 + (TA)n Simple_repeat Simple_repeat 2 67 0 365 296 138 54 chr6 112211545 112211748 -77067806 - MIR SINE MIR -12 250 31 2267 118 0 0 chr6 112212268 112212574 -77066980 + AluSc SINE Alu 3 308 -1 203 200 0 22 chr6 112212694 112212739 -77066815 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 208 71 71 0 chr6 112213686 112213728 -77065826 + (CATA)n Simple_repeat Simple_repeat 2 46 0 180 289 0 0 chr6 112215569 112215621 -77063933 - L3 LINE CR1 -3 1574 1523 251 289 157 33 chr6 112218271 112218392 -77061162 - L2 LINE L2 0 3272 3137 242 319 0 123 chr6 112218472 112218676 -77060878 - L2 LINE L2 -88 3184 3006 26 30 0 0 chr6 112218689 112218722 -77060832 + AT_rich Low_complexity Low_complexity 1 33 0 181 286 0 18 chr6 112219848 112219904 -77059650 - L3 LINE CR1 -278 1299 1245 352 165 44 66 chr6 112220754 112220845 -77058709 - MIR SINE MIR -60 202 114 599 88 35 18 chr6 112221074 112221187 -77058367 + GA-rich Low_complexity Low_complexity 1 115 0 339 25 0 0 chr6 112221640 112221680 -77057874 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 23 33 0 0 chr6 112225638 112225668 -77053886 + AT_rich Low_complexity Low_complexity 1 30 0 359 254 153 29 chr6 112225865 112226074 -77053480 + MIR SINE MIR 21 255 -7 305 282 78 113 chr6 112226552 112226977 -77052577 - L2 LINE L2 0 3313 2904 497 229 20 203 chr6 112227024 112227330 -77052224 + MIR SINE MIR 13 262 0 580 205 88 12 chr6 112227390 112227561 -77051993 - LTR52 LTR ERVL -22 399 216 250 232 36 0 chr6 112227587 112227643 -77051911 - LTR52 LTR ERVL -262 159 102 816 148 6 23 chr6 112227643 112227819 -77051735 + CT-rich Low_complexity Low_complexity 2 174 0 2227 123 7 0 chr6 112227846 112228156 -77051398 - AluSp SINE Alu -1 312 1 575 178 0 78 chr6 112228157 112228286 -77051268 - LTR52 LTR ERVL -302 119 1 282 56 0 0 chr6 112228480 112228516 -77051038 + (TA)n Simple_repeat Simple_repeat 1 36 0 391 270 62 118 chr6 112229303 112229607 -77049947 - HAL1 LINE L1 0 2507 2221 275 320 0 40 chr6 112229714 112229839 -77049715 - HAL1b LINE L1 -448 900 781 2003 99 88 0 chr6 112230632 112230915 -77048639 + AluSc SINE Alu 1 308 -1 21 36 0 0 chr6 112231820 112231848 -77047706 + AT_rich Low_complexity Low_complexity 1 28 0 571 236 93 6 chr6 112232084 112232245 -77047309 + MIR SINE MIR 56 230 -32 1342 180 137 30 chr6 112232279 112232645 -77046909 - MLT2B1 LTR ERVL -10 510 106 2439 140 17 0 chr6 112232645 112232996 -77046558 - LTR18A LTR ERVL 0 357 1 524 206 0 0 chr6 112233173 112233275 -77046279 - HERVL18 LTR ERVL 0 6047 5946 320 241 0 0 chr6 112233276 112233334 -77046220 - HERVL18 LTR ERVL -781 5266 5209 671 85 11 0 chr6 112233334 112233428 -77046126 - HERVL18 LTR ERVL -1559 4488 4394 5143 160 5 2 chr6 112233430 112234288 -77045266 - HERVL18 LTR ERVL -2468 3579 2720 1276 113 305 0 chr6 112234287 112234543 -77045011 - HERVL18 LTR ERVL -3595 2452 2119 * 3628 193 9 27 chr6 112234542 112235512 -77044042 - HERVL18 LTR ERVL -4237 1810 160 866 174 155 0 chr6 112235523 112235684 -77043870 - LTR18A LTR ERVL -171 186 1 517 158 79 0 chr6 112235684 112235785 -77043769 - MLT2B1 LTR ERVL -411 109 1 21 0 0 0 chr6 112236484 112236505 -77043049 + AT_rich Low_complexity Low_complexity 1 21 0 3014 220 21 3 chr6 112237150 112237760 -77041794 + MLT1E3 LTR MaLR 3 623 -1 227 98 0 0 chr6 112239453 112239494 -77040060 + MADE1 DNA Mariner 39 79 -1 602 296 91 17 chr6 112240660 112240890 -77038664 + MIR SINE MIR 4 250 -12 333 266 105 7 chr6 112241455 112241598 -77037956 - MER103 DNA DNA -7 159 3 201 94 0 0 chr6 112241773 112241805 -77037749 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 7323 40 6 0 chr6 112241805 112242724 -77036830 - L1PA5 LINE L1 -16 6138 5219 16048 51 2 1 chr6 112242725 112244855 -77034699 + L1PA5 LINE L1 3070 5202 -944 198 0 0 0 chr6 112245224 112245246 -77034308 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 25 0 0 0 chr6 112247819 112247844 -77031710 + AT_rich Low_complexity Low_complexity 1 25 0 183 80 0 0 chr6 112248284 112248309 -77031245 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 226 265 15 0 chr6 112249195 112249263 -77030291 + (TA)n Simple_repeat Simple_repeat 1 69 0 450 238 0 9 chr6 112251680 112251785 -77027769 - L1PA16 LINE L1 -9 6157 6054 510 307 67 0 chr6 112252271 112252450 -77027104 + MIR SINE MIR 49 239 -23 589 263 112 11 chr6 112253070 112253249 -77026305 + L2 LINE L2 2478 2674 -640 440 317 66 33 chr6 112253242 112253425 -77026129 + L2 LINE L2 2848 3036 -277 * 3349 132 8 0 chr6 112253527 112254011 -77025543 - MER1A DNA MER1_type 0 529 42 340 307 11 0 chr6 112254011 112254099 -77025455 + L2 LINE L2 3225 3313 0 1272 157 55 77 chr6 112255519 112255747 -77023807 + MER33 DNA MER1_type 1 221 -2364 1768 185 45 13 chr6 112255747 112256125 -77023429 + MLT1B LTR MaLR 1 390 0 1272 157 55 77 chr6 112256125 112256221 -77023333 + MER33 DNA MER1_type 221 318 -6 24 32 0 0 chr6 112257326 112257357 -77022197 + AT_rich Low_complexity Low_complexity 1 31 0 2638 35 0 16 chr6 112257738 112258051 -77021503 + AluY SINE Alu 1 308 -3 23 0 0 0 chr6 112258433 112258456 -77021098 + AT_rich Low_complexity Low_complexity 1 23 0 467 131 19 28 chr6 112261718 112261825 -77017729 + GA-rich Low_complexity Low_complexity 2 107 0 664 170 7 68 chr6 112263736 112263883 -77015671 - L2 LINE L2 0 3313 3176 303 304 107 9 chr6 112264914 112265026 -77014528 - MIR SINE MIR -55 153 31 351 298 8 24 chr6 112265127 112265251 -77014303 + L2 LINE L2 3192 3313 0 2052 133 3 3 chr6 112267677 112267985 -77011569 + AluSx SINE Alu 4 311 -1 210 182 0 23 chr6 112268260 112268304 -77011250 + GA-rich Low_complexity Low_complexity 2 44 0 336 265 60 13 chr6 112268808 112268959 -77010595 - L1ME4a LINE L1 -9 6112 5955 1884 271 68 21 chr6 112268987 112269813 -77009741 - L1M4 LINE L1 -2259 3887 3023 626 137 21 0 chr6 112269814 112269909 -77009645 - Tigger7 DNA MER2_type -2 2489 2393 * 1155 203 5 0 chr6 112269907 112270109 -77009445 - Tigger7 DNA MER2_type -466 267 65 543 96 0 0 chr6 112270134 112270217 -77009337 - L1MA3 LINE L1 0 6305 6223 252 266 51 0 chr6 112270237 112270316 -77009238 - MIR SINE MIR -113 149 67 664 119 0 0 chr6 112270317 112270426 -77009128 + MER2 DNA MER2_type 102 210 -135 242 292 0 69 chr6 112270452 112270524 -77009030 + MER2 DNA MER2_type 271 337 -8 260 341 30 30 chr6 112270738 112270902 -77008652 - L1ME4a LINE L1 -2210 5598 5435 1524 246 59 40 chr6 112270936 112271609 -77007945 - L1ME LINE L1 -571 5593 4909 243 0 0 0 chr6 112271609 112271636 -77007918 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1524 246 59 40 chr6 112271636 112271798 -77007756 - L1ME LINE L1 -1255 4909 4752 1631 231 65 69 chr6 112271813 112272380 -77007174 - MLT1F1 LTR MaLR -2 565 1 1782 247 26 6 chr6 112272380 112272911 -77006643 - L1ME LINE L1 -1402 4744 4203 266 275 8 67 chr6 112273032 112273152 -77006402 - MIR3 SINE MIR -21 187 75 360 243 230 47 chr6 112273806 112273954 -77005600 - MER5B DNA MER1_type -2 176 2 305 215 11 0 chr6 112274360 112274453 -77005101 + (TA)n Simple_repeat Simple_repeat 1 94 0 35 0 0 0 chr6 112274541 112274576 -77004978 + AT_rich Low_complexity Low_complexity 1 35 0 451 312 16 103 chr6 112274990 112275243 -77004311 + L2 LINE L2 3010 3240 -32 272 254 0 0 chr6 112275332 112275395 -77004159 - LTR50 LTR ERVL -732 63 1 4386 166 55 35 chr6 112275604 112276069 -77003485 + L1MB1 LINE L1 5122 5576 -592 207 0 0 0 chr6 112276069 112276092 -77003462 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4386 166 55 35 chr6 112276092 112276639 -77002915 + L1MB1 LINE L1 5576 6166 -2 240 335 25 63 chr6 112276714 112276872 -77002682 + MIR3 SINE MIR 31 182 -26 462 268 84 16 chr6 112276928 112277118 -77002436 + MIR SINE MIR 57 259 -3 21 36 0 0 chr6 112277771 112277799 -77001755 + AT_rich Low_complexity Low_complexity 1 28 0 182 288 34 34 chr6 112278337 112278396 -77001158 + L3 LINE CR1 418 476 -1101 191 308 19 0 chr6 112281871 112281923 -76997631 + L2 LINE L2 3251 3303 -10 8032 48 5 0 chr6 112282562 112282580 -76996974 - L1PA5 LINE L1 0 6154 6138 315 0 0 0 chr6 112282580 112282615 -76996939 + (TA)n Simple_repeat Simple_repeat 1 35 0 8032 48 5 0 chr6 112282615 112284383 -76995171 - L1PA5 LINE L1 -16 6138 4368 537 338 98 43 chr6 112284404 112285005 -76994549 + L2 LINE L2 2215 2848 -466 1495 275 129 17 chr6 112285067 112285646 -76993908 + L2 LINE L2 2151 2794 -520 21 36 0 0 chr6 112287088 112287116 -76992438 + AT_rich Low_complexity Low_complexity 1 28 0 3521 107 0 2 chr6 112287447 112287943 -76991611 - LOR1a LTR ERV1 -2 495 1 12554 240 58 31 chr6 112288043 112291924 -76987630 - L1MA6 LINE L1 -9 6179 2359 2233 110 3 0 chr6 112291924 112292224 -76987330 - AluSp SINE Alu -12 301 1 12554 240 58 31 chr6 112292224 112294324 -76985230 - L1MA6 LINE L1 -3829 2359 316 388 240 21 10 chr6 112294317 112294413 -76985141 - L1MA6 LINE L1 -5848 107 11 * 343 267 28 30 chr6 112294440 112294561 -76984993 - MIR SINE MIR -63 145 70 973 37 15 15 chr6 112296299 112296433 -76983121 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 195 378 0 0 chr6 112296951 112297033 -76982521 + L2 LINE L2 1168 1249 -2065 336 229 132 21 chr6 112297422 112297566 -76981988 + L1ME4a LINE L1 5959 6118 -3 219 358 126 14 chr6 112297642 112297991 -76981563 + L2 LINE L2 1807 2194 -1120 21 57 0 0 chr6 112298137 112298172 -76981382 + AT_rich Low_complexity Low_complexity 1 35 0 277 309 107 0 chr6 112298805 112298940 -76980614 + MIR SINE MIR 31 178 -68 234 321 49 0 chr6 112299265 112299346 -76980208 - L2 LINE L2 0 3313 3229 * 367 310 121 11 chr6 112299316 112299490 -76980064 + MIR3 SINE MIR 16 208 0 216 184 0 0 chr6 112302132 112302181 -76977373 + A-rich Low_complexity Low_complexity 1 49 0 236 242 0 61 chr6 112304085 112304151 -76975403 + MIR SINE MIR 199 260 -2 2448 96 0 0 chr6 112304247 112304559 -76974995 - AluSq SINE Alu -1 312 1 1326 216 113 44 chr6 112306579 112306987 -76972567 - MER63B DNA MER1_type 0 436 1 228 67 0 0 chr6 112307501 112307531 -76972023 + (T)n Simple_repeat Simple_repeat 1 30 0 213 241 0 26 chr6 112307756 112307872 -76971682 + (TA)n Simple_repeat Simple_repeat 1 113 0 * 312 224 0 0 chr6 112307871 112307906 -76971648 + (CA)n Simple_repeat Simple_repeat 2 36 -50 2143 190 14 25 chr6 112307906 112308343 -76971211 - Tigger2a DNA MER2_type 0 434 3 312 224 0 0 chr6 112308343 112308392 -76971162 + (CA)n Simple_repeat Simple_repeat 35 86 0 300 111 0 0 chr6 112311697 112311742 -76967812 + (TG)n Simple_repeat Simple_repeat 2 46 0 248 241 56 0 chr6 112312998 112313052 -76966502 + MIR SINE MIR 134 190 -72 1452 201 45 0 chr6 112313251 112313370 -76966184 + AluJo SINE Alu 3 115 -197 216 0 0 0 chr6 112313370 112313394 -76966160 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1452 201 45 0 chr6 112313394 112313542 -76966012 + AluJo SINE Alu 115 282 -30 1037 231 43 7 chr6 112314001 112314304 -76965250 + L1ME1 LINE L1 4743 5056 -1090 1162 140 0 0 chr6 112314304 112314468 -76965086 + AluSg/x SINE Alu 137 300 -12 3270 229 56 16 chr6 112314468 112315543 -76964011 + L1ME1 LINE L1 5049 6161 -5 242 316 95 0 chr6 112315747 112315842 -76963712 + MIR SINE MIR 50 153 -55 196 271 0 0 chr6 112315858 112315906 -76963648 - L2 LINE L2 -13 3300 3253 304 245 21 112 chr6 112316749 112316937 -76962617 - L1ME4a LINE L1 -4 6117 5947 544 269 78 10 chr6 112317019 112317313 -76962241 + HAL1 LINE L1 975 1288 -1219 1339 275 97 61 chr6 112317313 112318241 -76961313 - L2 LINE L2 -2 3311 2355 1225 181 46 13 chr6 112318434 112318586 -76960968 - AluJb SINE Alu -28 284 120 896 100 25 6 chr6 112318586 112318746 -76960808 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 1225 181 46 13 chr6 112318746 112318831 -76960723 - AluJb SINE Alu -192 120 39 386 77 0 0 chr6 112319070 112319122 -76960432 - MLT2A1 LTR ERVL 0 444 393 259 193 0 0 chr6 112319125 112319182 -76960372 - L1MC4 LINE L1 -1338 6704 6648 3136 83 23 4 chr6 112319184 112319599 -76959955 - MLT2A1 LTR ERVL -40 480 1 2952 258 29 62 chr6 112319618 112320368 -76959186 - L2 LINE L2 -979 2335 1625 1653 127 53 32 chr6 112320368 112320706 -76958848 + L1MA8 LINE L1 5943 6287 -4 2952 258 29 62 chr6 112320706 112320960 -76958594 - L2 LINE L2 -1689 1625 1364 777 303 113 6 chr6 112321583 112321910 -76957644 - L2 LINE L2 -1943 1371 1010 22 0 0 0 chr6 112322318 112322340 -76957214 + AT_rich Low_complexity Low_complexity 1 22 0 692 168 8 24 chr6 112322342 112322467 -76957087 + AluJb SINE Alu 3 125 -187 607 118 29 22 chr6 112322467 112322603 -76956951 + GA-rich Low_complexity Low_complexity 2 138 0 928 212 6 0 chr6 112322608 112322787 -76956767 + AluJb SINE Alu 129 308 -4 2612 196 41 21 chr6 112323334 112324201 -76955353 - L1MC3 LINE L1 0 7785 6823 296 225 75 0 chr6 112324200 112324280 -76955274 - L1 LINE L1 -2110 4036 3951 * 1194 196 36 60 chr6 112324281 112324613 -76954941 - L1MC2 LINE L1 -11 6333 6010 303 250 65 0 chr6 112324611 112324703 -76954851 - L1MCc LINE L1 -4240 2324 2227 * 1339 243 84 36 chr6 112324727 112325555 -76953999 - L1MCc LINE L1 -4423 2141 1180 1531 194 13 3 chr6 112325555 112325854 -76953700 + Tigger1 DNA MER2_type 1 302 -2116 4541 142 14 27 chr6 112325966 112326742 -76952812 + Tigger1 DNA MER2_type 1653 2418 0 705 181 3 8 chr6 112326743 112326921 -76952633 - L1MCc LINE L1 -4891 1155 1004 6748 141 12 15 chr6 112326935 112327750 -76951804 - L1MA2 LINE L1 0 7723 6907 2751 82 3 0 chr6 112327750 112328104 -76951450 + THE1A LTR MaLR 1 355 0 6748 141 12 15 chr6 112328104 112329294 -76950260 - L1MA2 LINE L1 -816 6907 5724 640 161 31 23 chr6 112329289 112329419 -76950135 - L1MA2 LINE L1 -7421 144 14 * 1858 244 70 119 chr6 112329421 112330421 -76949133 - L1MCc LINE L1 -5031 1014 64 180 77 0 0 chr6 112330431 112330457 -76949097 + (TTG)n Simple_repeat Simple_repeat 3 28 0 719 286 140 18 chr6 112331595 112331931 -76947623 + MLT1J2 LTR MaLR 64 440 -10 251 255 75 64 chr6 112332082 112332176 -76947378 + LTR16C LTR ERVL 137 231 -260 419 307 173 11 chr6 112332295 112332474 -76947080 + MLT1J2 LTR MaLR 241 448 -2 308 419 6 6 chr6 112332928 112333088 -76946466 - L3 LINE CR1 -38 1539 1380 378 343 218 20 chr6 112333142 112333857 -76945697 + L2 LINE L2 2069 2925 -389 195 42 0 0 chr6 112333973 112333997 -76945557 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 260 256 91 40 chr6 112334045 112334244 -76945310 - L1ME4a LINE L1 -172 5949 5741 1853 177 18 21 chr6 112334976 112335309 -76944245 - MLT1A1 LTR MaLR 0 365 34 243 88 0 0 chr6 112335519 112335553 -76944001 + (TA)n Simple_repeat Simple_repeat 2 35 0 1384 252 0 0 chr6 112335553 112335862 -76943692 - AluSx SINE Alu -3 309 1 1250 222 8 8 chr6 112336132 112336380 -76943174 - MLT1A1 LTR MaLR -101 264 17 243 88 0 0 chr6 112336575 112336609 -76942945 + (TA)n Simple_repeat Simple_repeat 2 35 0 2089 146 0 0 chr6 112336609 112336918 -76942636 - AluSx SINE Alu -3 309 1 216 0 0 0 chr6 112337452 112337476 -76942078 + (TA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr6 112338960 112338981 -76940573 + AT_rich Low_complexity Low_complexity 1 21 0 1188 231 21 0 chr6 112340180 112340418 -76939136 - MIR SINE MIR -2 260 18 1816 189 37 6 chr6 112340909 112341263 -76938291 - MLT1A1 LTR MaLR 0 365 1 6957 57 8 0 chr6 112341556 112342812 -76936742 + L1PA7 LINE L1 4867 6143 -11 324 48 0 0 chr6 112343614 112343656 -76935898 + (TTA)n Simple_repeat Simple_repeat 1 42 0 42735 34 21 1 chr6 112343656 112349670 -76929884 - L1PA2 LINE L1 -13 6142 5 31 0 0 0 chr6 112350740 112350771 -76928783 + AT_rich Low_complexity Low_complexity 1 31 0 254 337 30 11 chr6 112350813 112350942 -76928612 + MIR SINE MIR 59 194 -14 22 0 0 0 chr6 112350977 112350999 -76928555 + AT_rich Low_complexity Low_complexity 1 22 0 15705 94 11 0 chr6 112351180 112354215 -76925339 - L1PA7 LINE L1 -3 6151 3093 4926 94 66 0 chr6 112354218 112354949 -76924605 + L1PA7 LINE L1 2315 3093 -3053 1704 230 46 57 chr6 112355199 112355725 -76923829 + MLT2B1 LTR ERVL 1 520 0 940 246 62 10 chr6 112355725 112356002 -76923552 + ERVL LTR ERVL 1 273 -5381 1715 208 11 28 chr6 112356021 112356381 -76923173 + MLT1A1 LTR MaLR 12 365 0 27305 181 36 44 chr6 112356387 112361885 -76917669 + ERVL LTR ERVL 303 5757 -7 1079 244 286 2 chr6 112361885 112362290 -76917264 + MLT2B1 LTR ERVL 1 520 0 595 39 0 0 chr6 112362602 112362680 -76916874 - L1PA2 LINE L1 0 6155 6078 267 247 27 0 chr6 112363962 112364035 -76915519 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 268 325 18 30 chr6 112364288 112364457 -76915097 + L1PB3 LINE L1 4188 4354 -1792 560 194 8 0 chr6 112365114 112365243 -76914311 + CT-rich Low_complexity Low_complexity 1 130 0 1662 191 26 0 chr6 112365243 112365546 -76914008 - AluSx SINE Alu -1 311 1 21 89 0 0 chr6 112365866 112365922 -76913632 + AT_rich Low_complexity Low_complexity 1 56 0 191 86 0 29 chr6 112366485 112366520 -76913034 + (TTATA)n Simple_repeat Simple_repeat 3 36 0 394 236 115 18 chr6 112366594 112366759 -76912795 + L1ME4a LINE L1 5727 5907 -214 180 0 0 0 chr6 112367814 112367834 -76911720 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 315 0 0 0 chr6 112367865 112367900 -76911654 + (TA)n Simple_repeat Simple_repeat 1 35 0 506 192 17 0 chr6 112367902 112368022 -76911532 - L1MB7 LINE L1 -15 6169 6048 1543 161 4 4 chr6 112368437 112368698 -76910856 + AluSx SINE Alu 46 306 -6 368 276 49 16 chr6 112369328 112369451 -76910103 + MIR SINE MIR 85 211 -51 226 258 0 30 chr6 112369882 112369948 -76909606 + CT-rich Low_complexity Low_complexity 3 66 0 25 31 0 0 chr6 112369992 112370024 -76909530 + AT_rich Low_complexity Low_complexity 1 32 0 24738 39 0 0 chr6 112371510 112374569 -76904985 - L1PA3 LINE L1 -2215 3931 873 12069 35 10 1 chr6 112374569 112376782 -76902772 + L1PA3 LINE L1 3932 6152 -3 3214 168 107 11 chr6 112377158 112378208 -76901346 + L1PB3 LINE L1 4616 5791 -363 428 98 79 0 chr6 112378218 112378382 -76901172 + (TA)n Simple_repeat Simple_repeat 2 178 0 232 132 38 0 chr6 112378383 112378436 -76901118 + (TATAA)n Simple_repeat Simple_repeat 3 57 0 2168 126 25 3 chr6 112378436 112378800 -76900754 + L1PB3 LINE L1 5782 6153 -1 25 90 0 0 chr6 112379138 112379205 -76900349 + AT_rich Low_complexity Low_complexity 1 67 0 384 179 45 50 chr6 112379220 112379399 -76900155 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 181 53 79 26 chr6 112379427 112379465 -76900089 + (TATAA)n Simple_repeat Simple_repeat 5 44 0 261 172 22 52 chr6 112379490 112379624 -76899930 + (TTATA)n Simple_repeat Simple_repeat 5 134 0 40 67 0 0 chr6 112379962 112380037 -76899517 + AT_rich Low_complexity Low_complexity 1 75 0 827 216 54 15 chr6 112380291 112380495 -76899059 + MER20 DNA MER1_type 1 212 -7 36 23 0 0 chr6 112380582 112380625 -76898929 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr6 112380763 112380792 -76898762 + AT_rich Low_complexity Low_complexity 1 29 0 220 200 0 0 chr6 112381512 112381552 -76898002 + GA-rich Low_complexity Low_complexity 4 43 0 25 31 0 0 chr6 112385097 112385129 -76894425 + AT_rich Low_complexity Low_complexity 1 32 0 26 88 0 0 chr6 112386136 112386204 -76893350 + AT_rich Low_complexity Low_complexity 1 68 0 231 382 27 0 chr6 112386313 112386423 -76893131 - MIR SINE MIR -75 133 21 7492 174 16 16 chr6 112387020 112389344 -76890210 + L1PA13 LINE L1 3847 6156 -7 23 0 0 0 chr6 112389344 112389367 -76890187 + AT_rich Low_complexity Low_complexity 1 23 0 351 316 84 7 chr6 112389434 112389589 -76889965 + HAL1b LINE L1 32 198 -1150 321 345 65 16 chr6 112389797 112390043 -76889511 + HAL1b LINE L1 425 682 -666 306 289 82 30 chr6 112390046 112390181 -76889373 + HAL1b LINE L1 733 874 -474 2055 116 7 0 chr6 112390182 112390566 -76888988 - AluSx SINE Alu 0 312 5 328 322 73 50 chr6 112390902 112391203 -76888351 + L1M4 LINE L1 2197 2504 -3642 24 32 0 0 chr6 112391435 112391466 -76888088 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr6 112391526 112391550 -76888004 + AT_rich Low_complexity Low_complexity 1 24 0 1186 146 26 43 chr6 112392085 112392318 -76887236 - AluJo SINE Alu 0 312 84 24 53 0 0 chr6 112393197 112393235 -76886319 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr6 112393737 112393760 -76885794 + AT_rich Low_complexity Low_complexity 1 23 0 330 265 48 84 chr6 112393813 112393979 -76885575 - MIR SINE MIR -52 210 51 2217 153 3 6 chr6 112396175 112396541 -76883013 - MLT1A1 LTR MaLR 0 365 1 388 189 25 74 chr6 112396678 112396800 -76882754 - MER103 DNA DNA -43 123 8 355 313 189 32 chr6 112397105 112397444 -76882110 + L2 LINE L2 864 1255 -2059 262 377 90 35 chr6 112397454 112398088 -76881466 + L2 LINE L2 1541 2209 -1105 202 225 0 0 chr6 112398114 112398154 -76881400 + L2 LINE L2 2583 2622 -692 353 343 92 46 chr6 112398449 112398776 -76880778 + L2 LINE L2 2967 3308 -5 192 254 0 0 chr6 112400636 112400695 -76878859 + GA-rich Low_complexity Low_complexity 2 60 0 29 47 0 0 chr6 112400924 112400967 -76878587 + AT_rich Low_complexity Low_complexity 1 43 0 23 78 0 0 chr6 112401006 112401057 -76878497 + AT_rich Low_complexity Low_complexity 1 51 0 531 317 40 18 chr6 112401455 112401682 -76877872 + MIR SINE MIR 31 262 0 23 33 0 0 chr6 112401924 112401954 -76877600 + AT_rich Low_complexity Low_complexity 1 30 0 270 56 0 0 chr6 112403810 112403846 -76875708 + (CA)n Simple_repeat Simple_repeat 2 37 0 248 259 9 103 chr6 112404023 112404139 -76875415 - L2 LINE L2 -1 3312 3208 725 270 89 21 chr6 112404821 112405058 -76874496 + MIR SINE MIR 10 262 0 789 290 186 48 chr6 112405396 112405946 -76873608 + MLT1G1 LTR MaLR 1 590 0 536 272 68 0 chr6 112406082 112406244 -76873310 - MLT1G1 LTR MaLR -422 173 1 334 250 53 0 chr6 112406348 112406424 -76873130 - MLT1G3 LTR MaLR -192 338 259 * 462 242 68 0 chr6 112406414 112406546 -76873008 + MLT1G LTR MaLR 431 571 -19 405 263 122 27 chr6 112406747 112406758 -76872796 - L1PA13 LINE L1 -278 5884 5875 1715 114 71 0 chr6 112406758 112407039 -76872515 + L1PA13 LINE L1 5861 6161 -2 405 263 122 27 chr6 112407039 112407321 -76872233 - L1ME3 LINE L1 -287 5875 5522 225 108 0 0 chr6 112407506 112407543 -76872011 + (CA)n Simple_repeat Simple_repeat 2 38 0 515 302 131 5 chr6 112409473 112409695 -76869859 + MIR SINE MIR 11 260 -2 541 350 31 5 chr6 112410178 112410372 -76869182 + MIR SINE MIR 14 212 -50 386 154 9 27 chr6 112410521 112410631 -76868923 + (TA)n Simple_repeat Simple_repeat 2 109 0 210 37 0 0 chr6 112410636 112410663 -76868891 + (GA)n Simple_repeat Simple_repeat 2 28 0 303 332 59 20 chr6 112411395 112411597 -76867957 - MIR SINE MIR -33 229 20 180 388 15 61 chr6 112412829 112413025 -76866529 + L3 LINE CR1 31 217 -1360 21 0 0 0 chr6 112413264 112413285 -76866269 + AT_rich Low_complexity Low_complexity 1 21 0 283 370 0 0 chr6 112413367 112413448 -76866106 - L2 LINE L2 -7 3265 3185 247 175 53 35 chr6 112413942 112413999 -76865555 - MIR SINE MIR -116 146 89 678 179 0 40 chr6 112414006 112414161 -76865393 - MIR SINE MIR -13 249 102 2373 14 0 14 chr6 112414439 112414723 -76864831 - L1PA4 LINE L1 0 6155 5876 421 351 15 8 chr6 112414915 112415049 -76864505 + MIR SINE MIR 4 138 -124 339 290 197 21 chr6 112415049 112415242 -76864312 - MIR SINE MIR -9 253 27 208 263 53 0 chr6 112415293 112415350 -76864204 + L2 LINE L2 3188 3247 -66 194 216 0 0 chr6 112415505 112415542 -76864012 + L2 LINE L2 3226 3262 -10 21 0 0 0 chr6 112415964 112415985 -76863569 + AT_rich Low_complexity Low_complexity 1 21 0 316 235 189 8 chr6 112416475 112416607 -76862947 + MIR SINE MIR 48 203 -59 1666 179 34 0 chr6 112416673 112416969 -76862585 - AluJb SINE Alu -6 306 1 528 304 114 35 chr6 112417039 112417355 -76862199 + L3 LINE CR1 1209 1549 -28 183 186 0 0 chr6 112417595 112417638 -76861916 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 246 237 158 86 chr6 112417640 112417779 -76861775 - L2 LINE L2 -4 3309 3161 24 32 0 0 chr6 112417779 112417810 -76861744 + AT_rich Low_complexity Low_complexity 1 31 0 439 310 107 0 chr6 112418361 112418548 -76861006 - MIR SINE MIR -15 247 41 225 196 0 22 chr6 112419162 112419208 -76860346 + GA-rich Low_complexity Low_complexity 3 47 0 450 319 81 34 chr6 112419276 112419571 -76859983 + L2 LINE L2 2998 3306 -7 200 313 62 21 chr6 112420780 112420876 -76858678 + MIR SINE MIR 128 227 -35 807 308 46 26 chr6 112421295 112421600 -76857954 - MLT1I LTR MaLR -8 401 91 213 65 0 0 chr6 112422306 112422337 -76857217 + (TG)n Simple_repeat Simple_repeat 2 32 0 1568 166 14 7 chr6 112424004 112424299 -76855255 - L1MA9 LINE L1 -11 6301 6005 867 143 17 69 chr6 112425308 112425483 -76854071 - MER20 DNA MER1_type -48 171 6 315 300 53 97 chr6 112425502 112425729 -76853825 - LTR16C LTR ERVL -116 375 159 216 282 0 13 chr6 112426465 112426543 -76853011 + (TA)n Simple_repeat Simple_repeat 1 77 0 351 292 153 15 chr6 112427256 112427393 -76852161 + MIR SINE MIR 57 212 -50 274 346 53 8 chr6 112427482 112427615 -76851939 + MIR SINE MIR 117 255 -7 398 52 0 17 chr6 112428415 112428473 -76851081 + (TC)n Simple_repeat Simple_repeat 2 58 0 1109 228 114 9 chr6 112428997 112429331 -76850223 - MLT1B LTR MaLR -17 373 5 323 360 11 81 chr6 112429338 112429524 -76850030 + MIR3 SINE MIR 35 207 -1 303 140 0 0 chr6 112430763 112430813 -76848741 + (TA)n Simple_repeat Simple_repeat 2 51 0 228 67 0 0 chr6 112430816 112430846 -76848708 + (GA)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr6 112431825 112431848 -76847706 + AT_rich Low_complexity Low_complexity 1 23 0 1742 189 22 8 chr6 112432446 112432806 -76846748 + MLT1A1 LTR MaLR 1 365 0 281 343 47 70 chr6 112433328 112433541 -76846013 - L2 LINE L2 -224 3048 2841 677 236 81 32 chr6 112434700 112435010 -76844544 - L1ME4a LINE L1 -174 5947 5623 684 303 75 33 chr6 112435373 112435829 -76843725 - L1ME LINE L1 -367 5754 5280 495 207 227 13 chr6 112435892 112436042 -76843512 + MER5A DNA MER1_type 6 187 -2 377 208 13 0 chr6 112436124 112436201 -76843353 + MER116 DNA Mariner 1 78 -2 8134 158 17 10 chr6 112436373 112438467 -76841087 + L1PB1 LINE L1 3689 5791 -360 549 80 0 0 chr6 112438476 112438551 -76841003 + (CA)n Simple_repeat Simple_repeat 2 76 0 2475 104 3 8 chr6 112438563 112438966 -76840588 + L1PB1 LINE L1 5782 6182 0 189 0 0 0 chr6 112439366 112439387 -76840167 + (TA)n Simple_repeat Simple_repeat 1 21 0 301 272 52 66 chr6 112439894 112440030 -76839524 + L2 LINE L2 3175 3308 -5 2187 265 102 52 chr6 112443069 112443195 -76836359 - L2 LINE L2 0 3313 3195 509 261 244 22 chr6 112443195 112443375 -76836179 - MER58A DNA MER1_type 0 224 5 2187 265 102 52 chr6 112443375 112444192 -76835362 - L2 LINE L2 -118 3195 2311 2069 139 20 0 chr6 112444192 112444494 -76835060 - AluSx SINE Alu -3 309 2 2187 265 102 52 chr6 112444494 112444737 -76834817 - L2 LINE L2 -1002 2311 2081 280 333 68 8 chr6 112445751 112445868 -76833686 - MIR SINE MIR -68 140 17 24 53 0 0 chr6 112446285 112446323 -76833231 + AT_rich Low_complexity Low_complexity 1 38 0 2648 98 15 20 chr6 112447781 112448189 -76831365 + L1PA13 LINE L1 5758 6163 0 2144 182 65 109 chr6 112448710 112449390 -76830164 - MLT1E1 LTR MaLR -4 650 1 255 61 0 0 chr6 112453534 112453567 -76825987 + (TG)n Simple_repeat Simple_repeat 1 33 0 1661 194 3 7 chr6 112453842 112454141 -76825413 - AluJo SINE Alu -14 298 1 309 100 0 0 chr6 112454173 112454223 -76825331 + (TG)n Simple_repeat Simple_repeat 2 51 0 28 0 0 0 chr6 112454252 112454280 -76825274 + AT_rich Low_complexity Low_complexity 1 28 0 180 200 0 0 chr6 112454363 112454408 -76825146 + (TG)n Simple_repeat Simple_repeat 2 46 0 208 318 75 52 chr6 112454907 112455080 -76824474 + L2 LINE L2 2981 3157 -115 22 35 0 0 chr6 112455080 112455109 -76824445 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 112455288 112455325 -76824229 + AT_rich Low_complexity Low_complexity 1 37 0 204 252 87 29 chr6 112456208 112456311 -76823243 - L2 LINE L2 -410 2904 2796 5104 153 29 19 chr6 112456321 112457346 -76822208 + L1PA16 LINE L1 5128 6166 0 815 249 65 27 chr6 112457346 112457607 -76821947 - L2 LINE L2 -528 2786 2516 844 217 39 0 chr6 112457922 112458102 -76821452 - MER5A DNA MER1_type 0 189 3 2366 114 5 46 chr6 112458184 112458244 -76821310 + L1PA13 LINE L1 5768 5829 -334 2382 76 3 0 chr6 112458244 112458545 -76821009 + AluY SINE Alu 1 302 -9 2366 114 5 46 chr6 112458545 112458895 -76820659 + L1PA13 LINE L1 5829 6161 -2 400 266 73 0 chr6 112458936 112459045 -76820509 - L2 LINE L2 -1012 2302 2186 1321 210 82 12 chr6 112459297 112459616 -76819938 - MER2 DNA MER2_type -2 342 2 808 276 72 96 chr6 112459617 112460147 -76819407 + MLT1G LTR MaLR 16 536 -31 545 343 101 20 chr6 112461204 112461601 -76817953 + L2 LINE L2 2187 2615 -699 260 283 132 0 chr6 112461601 112461707 -76817847 - LTR67 LTR ERVL 0 557 438 265 193 0 35 chr6 112461985 112462042 -76817512 + MLT1H1 LTR MaLR 1 55 -500 5908 166 13 8 chr6 112462043 112464120 -76815434 + L1PA16 LINE L1 4077 6165 -1 339 270 107 40 chr6 112464123 112464348 -76815206 + MLT1H1 LTR MaLR 6 299 -296 465 110 0 0 chr6 112464393 112464466 -76815088 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 318 334 127 54 chr6 112464591 112465149 -76814405 + L2 LINE L2 2667 3255 -17 590 195 149 45 chr6 112465151 112465305 -76814249 - MER5A DNA MER1_type -6 183 14 182 321 118 90 chr6 112465420 112465632 -76813922 - L2 LINE L2 -9 3263 3046 345 357 71 29 chr6 112467410 112467648 -76811906 + MIR SINE MIR 15 262 0 198 103 0 0 chr6 112469756 112469785 -76809769 + (GA)n Simple_repeat Simple_repeat 2 30 0 297 0 0 0 chr6 112470134 112470167 -76809387 + (CA)n Simple_repeat Simple_repeat 2 34 0 185 128 0 26 chr6 112470526 112470565 -76808989 + (TC)n Simple_repeat Simple_repeat 2 39 0 437 303 27 38 chr6 112471660 112471845 -76807709 - MIR SINE MIR -75 187 5 1320 204 32 32 chr6 112471947 112472227 -76807327 + AluJo SINE Alu 3 282 -30 183 100 0 0 chr6 112472230 112472260 -76807294 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1567 126 4 0 chr6 112472380 112472610 -76806944 + AluSp SINE Alu 83 313 0 201 74 0 0 chr6 112472619 112472646 -76806908 + (GA)n Simple_repeat Simple_repeat 2 28 0 355 306 126 19 chr6 112474729 112474935 -76804619 - MIR SINE MIR -34 228 1 287 364 66 0 chr6 112474989 112475110 -76804444 - L2 LINE L2 -2 3270 3142 302 343 222 23 chr6 112475317 112475533 -76804021 + MIR SINE MIR 4 262 0 5690 158 24 19 chr6 112475563 112475615 -76803939 - L1MA4 LINE L1 -1 6299 6249 2117 132 7 16 chr6 112475615 112475925 -76803629 - AluSq SINE Alu -6 307 1 5690 158 24 19 chr6 112475925 112477407 -76802147 - L1MA4 LINE L1 -51 6249 4767 355 284 14 14 chr6 112477579 112477730 -76801824 + MER51-int LTR ERV1 6797 7129 -590 378 0 0 0 chr6 112478078 112478120 -76801434 + (CA)n Simple_repeat Simple_repeat 2 43 0 1300 215 26 8 chr6 112478123 112478388 -76801166 + MER93b LTR ERV1 104 373 0 25 0 0 0 chr6 112480014 112480039 -76799515 + AT_rich Low_complexity Low_complexity 1 25 0 32 57 0 0 chr6 112482030 112482083 -76797471 + AT_rich Low_complexity Low_complexity 1 53 0 26 0 0 0 chr6 112482463 112482489 -76797065 + AT_rich Low_complexity Low_complexity 1 26 0 250 353 10 20 chr6 112483311 112483413 -76796141 + MIR SINE MIR 49 149 -113 2065 152 44 0 chr6 112483558 112483901 -76795653 + MER47A DNA MER2_type 2 359 -7 197 351 16 63 chr6 112483903 112484089 -76795465 - L2 LINE L2 -947 2367 2190 234 0 0 0 chr6 112484089 112484115 -76795439 + (CA)n Simple_repeat Simple_repeat 1 26 0 264 158 0 0 chr6 112485886 112485943 -76793611 + GA-rich Low_complexity Low_complexity 1 57 0 213 176 0 0 chr6 112487300 112487334 -76792220 - L3 LINE CR1 -3 1574 1541 2459 181 74 12 chr6 112487829 112488314 -76791240 - MLT2B2 LTR ERVL 0 515 1 226 380 0 0 chr6 112488841 112488912 -76790642 + tRNA-Ile-ATT tRNA tRNA 1 71 -6 267 291 238 17 chr6 112489239 112489411 -76790143 + MIR SINE MIR 51 260 -2 261 301 176 7 chr6 112489480 112489616 -76789938 - MIR3 SINE MIR -7 201 43 296 267 44 96 chr6 112489738 112489873 -76789681 - L2 LINE L2 -5 3308 3181 30 0 0 0 chr6 112490834 112490864 -76788690 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr6 112492475 112492498 -76787056 + AT_rich Low_complexity Low_complexity 1 23 0 321 261 45 54 chr6 112492731 112492842 -76786712 + MIR3 SINE MIR 69 178 -30 410 223 19 0 chr6 112495972 112496075 -76783479 + MER96B DNA MER1_type? 8 112 -305 302 168 8 64 chr6 112496110 112496227 -76783327 - MLT1E1 LTR MaLR -503 151 1 249 119 0 0 chr6 112496227 112496269 -76783285 + MER96B DNA MER1_type? 139 180 -237 1969 112 32 0 chr6 112496289 112496566 -76782988 + AluY SINE Alu 6 291 -20 876 195 136 172 chr6 112496596 112497118 -76782436 - MLT1E2 LTR MaLR -2 622 1 370 224 112 93 chr6 112497118 112497384 -76782170 + MER96B DNA MER1_type? 140 410 -7 361 359 66 6 chr6 112497387 112497554 -76782000 - MIR SINE MIR -62 200 24 1215 202 15 110 chr6 112497588 112497989 -76781565 + MLT1A1 LTR MaLR 1 363 -2 570 172 94 0 chr6 112498540 112498668 -76780886 + L1PB4 LINE L1 6017 6156 0 780 59 0 0 chr6 112498831 112498933 -76780621 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 31 0 0 0 chr6 112499803 112499834 -76779720 + AT_rich Low_complexity Low_complexity 1 31 0 2097 121 7 0 chr6 112499834 112500131 -76779423 - AluSg SINE Alu -11 299 1 518 231 56 19 chr6 112500523 112500683 -76778871 - MIR SINE MIR -48 214 49 334 306 83 57 chr6 112501261 112501454 -76778100 + MIR SINE MIR 8 205 -57 25 0 0 0 chr6 112501455 112501480 -76778074 + AT_rich Low_complexity Low_complexity 1 25 0 1847 175 29 8 chr6 112502057 112502432 -76777122 + MLT1A1 LTR MaLR 1 365 0 182 362 0 0 chr6 112502510 112502557 -76776997 + L2 LINE L2 3208 3254 -18 258 359 13 44 chr6 112504195 112504354 -76775200 - L3 LINE CR1 -364 1213 1060 21 0 0 0 chr6 112504647 112504668 -76774886 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr6 112504699 112504727 -76774827 + AT_rich Low_complexity Low_complexity 1 28 0 36 23 0 0 chr6 112504900 112504943 -76774611 + AT_rich Low_complexity Low_complexity 1 43 0 1353 140 0 0 chr6 112505606 112505806 -76773748 + L1PB3 LINE L1 5940 6139 -15 378 0 0 0 chr6 112505810 112505852 -76773702 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 333 288 22 14 chr6 112505934 112506073 -76773481 - L1MEd LINE L1 -5961 158 19 1893 136 94 9 chr6 112506372 112506711 -76772843 - THE1C LTR MaLR -7 368 1 191 219 10 94 chr6 112507652 112507748 -76771806 - MER5C DNA MER1_type -204 120 33 348 280 66 86 chr6 112507909 112508166 -76771388 - L1ME LINE L1 -577 5587 5336 2060 171 42 40 chr6 112508394 112508946 -76770608 - MLT2A2 LTR ERVL 0 554 3 1426 249 211 26 chr6 112511641 112512143 -76767411 - MLT1G1 LTR MaLR 0 595 1 4573 162 45 28 chr6 112512355 112513270 -76766284 + L1MA8 LINE L1 5362 6291 0 299 226 0 0 chr6 112515043 112515105 -76764449 + L2 LINE L2 2994 3055 -217 428 365 85 60 chr6 112515717 112516473 -76763081 + L3 LINE CR1 49 823 -754 303 336 157 7 chr6 112517113 112517253 -76762301 - HAL1 LINE L1 -1589 918 758 235 213 0 21 chr6 112517306 112517353 -76762201 + HAL1 LINE L1 421 466 -2041 1703 272 93 64 chr6 112517439 112518029 -76761525 - HAL1 LINE L1 -1785 722 108 1440 139 78 37 chr6 112518029 112518323 -76761231 - AluJb SINE Alu -6 306 1 1703 272 93 64 chr6 112518323 112518423 -76761131 - HAL1 LINE L1 -2399 108 12 497 225 139 5 chr6 112518811 112519020 -76760534 - MER113 DNA MER1_type? -279 242 6 414 353 48 34 chr6 112519261 112519612 -76759942 + L3 LINE CR1 1180 1535 -42 207 0 0 0 chr6 112519952 112519975 -76759579 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1724 143 43 18 chr6 112520066 112520188 -76759366 + AluSg SINE Alu 1 118 -192 302 0 0 26 chr6 112520188 112520227 -76759327 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1724 143 43 18 chr6 112520227 112520384 -76759170 + AluSg SINE Alu 118 287 -23 2824 7 0 0 chr6 112520394 112520700 -76758854 + AluYb8 SINE Alu 1 306 -12 216 0 0 0 chr6 112520701 112520725 -76758829 + (TA)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr6 112521394 112521423 -76758131 + AT_rich Low_complexity Low_complexity 1 29 0 204 211 14 28 chr6 112521523 112521594 -76757960 + (TTA)n Simple_repeat Simple_repeat 2 71 0 4299 171 24 13 chr6 112521620 112522440 -76757114 - L1MB1 LINE L1 -1 6167 5339 442 326 13 64 chr6 112522498 112522734 -76756820 + MIR SINE MIR 28 251 -11 2961 3 0 0 chr6 112522756 112523074 -76756480 - AluYb8 SINE Alu 0 318 1 21 36 0 0 chr6 112523076 112523104 -76756450 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr6 112523119 112523156 -76756398 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr6 112524317 112524339 -76755215 + AT_rich Low_complexity Low_complexity 1 22 0 365 342 116 47 chr6 112524402 112524974 -76754580 + L2 LINE L2 2657 3272 0 1668 138 39 3 chr6 112525450 112525864 -76753690 - AluSx SINE Alu 0 424 1 982 338 146 20 chr6 112526155 112526982 -76752572 - L2 LINE L2 -1 3271 2332 23 33 0 0 chr6 112528015 112528045 -76751509 + AT_rich Low_complexity Low_complexity 1 30 0 406 258 42 78 chr6 112528123 112528340 -76751214 - HAL1b LINE L1 -807 541 333 1931 150 27 54 chr6 112528510 112528883 -76750671 + MER47A DNA MER2_type 3 365 -1 207 167 0 0 chr6 112529244 112529286 -76750268 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 201 260 60 0 chr6 112529313 112529363 -76750191 + MIR3 SINE MIR 156 208 0 1252 167 68 121 chr6 112530411 112530716 -76748838 + THE1C LTR MaLR 1 282 -93 8832 58 2 0 chr6 112530716 112532651 -76746903 + L1PA6 LINE L1 4185 6143 -11 1252 167 68 121 chr6 112532651 112532741 -76746813 + THE1C LTR MaLR 282 375 0 1226 111 81 5 chr6 112532744 112532942 -76746612 + THE1C-int LTR MaLR 4 216 -1364 229 226 16 16 chr6 112533282 112533344 -76746210 + THE1B LTR MaLR 303 364 0 9319 137 20 35 chr6 112533347 112534948 -76744606 + THE1C-int LTR MaLR 4 1580 0 1587 169 57 38 chr6 112534948 112535316 -76744238 + THE1C LTR MaLR 1 375 0 365 299 22 54 chr6 112536043 112536227 -76743327 - MER5B DNA MER1_type 0 178 1 278 288 138 31 chr6 112536231 112536391 -76743163 - MER5B DNA MER1_type -1 177 1 354 275 55 9 chr6 112537043 112537152 -76742402 - MIR SINE MIR -65 143 30 4427 191 29 2 chr6 112538021 112538927 -76740627 - L1MB3 LINE L1 0 6183 5254 796 244 28 16 chr6 112538922 112539176 -76740378 + L1MB3 LINE L1 4999 5255 -891 * 2358 102 0 0 chr6 112540014 112540317 -76739237 + AluSx SINE Alu 1 303 -9 2125 115 3 0 chr6 112541463 112541758 -76737796 - AluSx SINE Alu -14 298 3 9321 201 29 4 chr6 112541810 112542472 -76737082 - L1PA16 LINE L1 -1 6165 5521 2740 13 0 10 chr6 112542472 112542778 -76736776 - AluY SINE Alu -8 303 1 9321 201 29 4 chr6 112542778 112545212 -76734342 - L1PA16 LINE L1 -645 5521 3001 661 196 77 93 chr6 112545214 112545604 -76733950 - L1MC5 LINE L1 -44 7917 7522 912 45 30 8 chr6 112545604 112545737 -76733817 + (TTTC)n Simple_repeat Simple_repeat 4 139 0 1878 146 0 0 chr6 112545737 112546007 -76733547 - AluSx SINE Alu -42 270 1 661 196 77 93 chr6 112546007 112546037 -76733517 - L1MC5 LINE L1 -437 7524 7507 302 234 145 24 chr6 112546211 112546335 -76733219 + MER106A DNA MER1_type 97 235 -1 243 235 0 0 chr6 112546348 112546399 -76733155 - L1MC5 LINE L1 -603 7358 7308 783 275 71 79 chr6 112546553 112547046 -76732508 - L1MC4 LINE L1 -733 7228 6733 2194 96 0 19 chr6 112547046 112547183 -76732371 + AluY SINE Alu 1 139 -172 2139 77 42 3 chr6 112547183 112547468 -76732086 + AluY SINE Alu 1 296 -15 2194 96 0 19 chr6 112547468 112547644 -76731910 + AluY SINE Alu 139 308 -3 783 275 71 79 chr6 112547644 112548509 -76731045 - L1MC4 LINE L1 -1228 6733 5844 326 202 0 12 chr6 112548510 112548594 -76730960 + (TA)n Simple_repeat Simple_repeat 2 84 0 1159 205 68 0 chr6 112548597 112548860 -76730694 - L1MC4 LINE L1 -2224 5584 5304 2130 127 0 9 chr6 112550541 112550857 -76728697 - AluSq SINE Alu 0 313 1 693 253 15 35 chr6 112552801 112552999 -76726555 + MER58A DNA MER1_type 1 194 -30 2291 89 3 3 chr6 112553003 112553306 -76726248 - AluSq SINE Alu -10 303 1 24 0 0 0 chr6 112553578 112553602 -76725952 + AT_rich Low_complexity Low_complexity 1 24 0 2403 70 0 16 chr6 112553676 112553989 -76725565 - AluY SINE Alu -3 308 1 681 227 50 68 chr6 112554075 112554459 -76725095 - L1MC5 LINE L1 -36 7925 7549 4530 193 25 6 chr6 112555040 112556275 -76723279 - L1MB1 LINE L1 -562 5606 4347 2813 188 15 0 chr6 112556276 112556809 -76722745 + L1MB1 LINE L1 5617 6157 -11 443 320 10 10 chr6 112557220 112557414 -76722140 + HAL1 LINE L1 1410 1603 -904 1487 165 88 51 chr6 112557631 112557983 -76721571 + MLT1A1 LTR MaLR 1 365 0 861 81 81 0 chr6 112558788 112558911 -76720643 - MER85 DNA T2_type -2 137 5 3447 67 2 0 chr6 112559124 112559570 -76719984 - L1PA7 LINE L1 -1 6153 5707 278 225 306 18 chr6 112559781 112559892 -76719662 + MIR SINE MIR 43 185 -77 447 324 102 23 chr6 112561019 112561540 -76718014 + L1ME LINE L1 5255 5702 -460 285 266 109 23 chr6 112563199 112563327 -76716227 + MIR SINE MIR 105 243 -19 30 77 0 0 chr6 112566799 112566864 -76712690 + AT_rich Low_complexity Low_complexity 1 65 0 1518 228 63 12 chr6 112567130 112567542 -76712012 + MER63B DNA MER1_type 4 436 0 25 0 0 0 chr6 112568711 112568736 -76710818 + AT_rich Low_complexity Low_complexity 1 25 0 285 246 0 0 chr6 112569979 112570036 -76709518 + MLT1E2 LTR MaLR 19 75 -551 1626 169 63 41 chr6 112570037 112570404 -76709150 + THE1C LTR MaLR 1 375 0 2588 160 0 2 chr6 112570407 112570832 -76708722 + THE1C-int LTR MaLR 4 427 -1153 4895 160 49 13 chr6 112570977 112571616 -76707938 - L1PA16 LINE L1 -39 6127 5512 2305 77 0 0 chr6 112571616 112571927 -76707627 - AluY SINE Alu 0 311 1 4895 160 49 13 chr6 112571927 112572623 -76706931 - L1PA16 LINE L1 -654 5512 4749 6111 96 9 14 chr6 112574879 112576518 -76703036 + L1PA8 LINE L1 4536 6166 -6 21 82 0 0 chr6 112576518 112576567 -76702987 + AT_rich Low_complexity Low_complexity 1 49 0 843 278 89 68 chr6 112576630 112577718 -76701836 - L1ME LINE L1 -4498 1717 601 324 331 30 6 chr6 112578032 112578201 -76701353 - L1ME LINE L1 -6197 199 27 28 48 0 0 chr6 112578448 112578490 -76701064 + AT_rich Low_complexity Low_complexity 1 42 0 265 327 111 19 chr6 112578656 112578818 -76700736 - L2 LINE L2 -4 3309 3133 387 329 108 33 chr6 112578885 112579219 -76700335 - L1M4 LINE L1 -1310 4836 4478 6900 61 6 4 chr6 112579588 112580521 -76699033 + L1PA7 LINE L1 5221 6154 0 2847 214 50 28 chr6 112580523 112581246 -76698308 - L1MA9 LINE L1 -61 6251 5513 29 28 0 0 chr6 112581248 112581284 -76698270 + AT_rich Low_complexity Low_complexity 1 36 0 589 266 0 0 chr6 112581715 112581839 -76697715 + FLAM_A SINE Alu 1 124 -9 36 77 0 0 chr6 112581943 112582021 -76697533 + AT_rich Low_complexity Low_complexity 1 78 0 331 306 107 46 chr6 112582092 112582353 -76697201 - L1M4 LINE L1 -2974 3172 2896 27 29 0 0 chr6 112582771 112582805 -76696749 + AT_rich Low_complexity Low_complexity 1 34 0 7120 144 4 20 chr6 112583015 112584187 -76695367 + THE1C-int LTR MaLR 427 1580 0 1486 191 75 36 chr6 112584187 112584548 -76695006 + THE1C LTR MaLR 1 375 0 1255 232 77 35 chr6 112584548 112584949 -76694605 + MLT1D LTR MaLR 75 492 -13 346 277 38 122 chr6 112585077 112585284 -76694270 + HAL1 LINE L1 877 1045 -1462 2075 105 99 9 chr6 112585284 112585618 -76693936 + THE1B LTR MaLR 1 364 0 346 277 38 122 chr6 112585618 112585753 -76693801 + HAL1 LINE L1 1045 1190 -1317 1761 192 0 10 chr6 112585880 112586188 -76693366 + AluSx SINE Alu 3 307 -5 187 669 0 6 chr6 112586221 112586390 -76693164 + A-rich Low_complexity Low_complexity 2 169 0 23 33 0 0 chr6 112586629 112586659 -76692895 + AT_rich Low_complexity Low_complexity 1 30 0 2515 98 5 28 chr6 112586982 112587379 -76692175 - L1MA1 LINE L1 -19 6283 5896 198 167 0 0 chr6 112588709 112588745 -76690809 + (CA)n Simple_repeat Simple_repeat 1 36 0 28 29 0 0 chr6 112590001 112590036 -76689518 + AT_rich Low_complexity Low_complexity 1 35 0 464 288 51 0 chr6 112591944 112592062 -76687492 + L2 LINE L2 3190 3313 0 328 258 54 40 chr6 112593041 112593194 -76686360 + MIR SINE MIR 45 200 -62 238 341 129 0 chr6 112593552 112593684 -76685870 + MIR SINE MIR 108 256 -6 2153 127 0 9 chr6 112593842 112594157 -76685397 + AluSx SINE Alu 1 312 0 256 286 0 0 chr6 112594477 112594540 -76685014 + L2 LINE L2 3209 3271 -1 514 311 150 28 chr6 112595275 112595709 -76683845 + MER20B DNA MER1_type 45 531 -252 189 74 0 0 chr6 112595759 112595786 -76683768 + (GA)n Simple_repeat Simple_repeat 2 28 0 215 240 0 0 chr6 112596320 112596370 -76683184 + MIR SINE MIR 187 236 -26 25 51 0 0 chr6 112598152 112598191 -76681363 + AT_rich Low_complexity Low_complexity 1 39 0 276 171 261 11 chr6 112600389 112600477 -76679077 + MER103 DNA DNA 9 118 -48 268 221 161 87 chr6 112600499 112600648 -76678906 + MER5A DNA MER1_type 8 167 -22 2183 90 0 0 chr6 112600752 112601031 -76678523 - AluSc SINE Alu -7 302 24 182 37 37 0 chr6 112601316 112601343 -76678211 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2169 32 111 0 chr6 112601535 112601815 -76677739 - AluY SINE Alu 0 311 1 2103 126 10 0 chr6 112602417 112602718 -76676836 - AluSx SINE Alu -8 304 1 558 298 147 38 chr6 112602998 112603447 -76676107 - MLT1H1 LTR MaLR -24 531 34 213 313 95 82 chr6 112603819 112603966 -76675588 - MIR SINE MIR -74 188 40 31 0 0 0 chr6 112604223 112604254 -76675300 + AT_rich Low_complexity Low_complexity 1 31 0 2018 254 111 63 chr6 112604274 112605087 -76674467 - L1MEc LINE L1 -2682 3533 2760 2310 80 0 0 chr6 112605087 112605373 -76674181 - AluY SINE Alu -16 295 10 2018 254 111 63 chr6 112605373 112606160 -76673394 - L1MEc LINE L1 -3455 2760 1864 17945 155 71 40 chr6 112606169 112610627 -76668927 + L1P3 LINE L1 66 4826 -1635 32188 77 9 3 chr6 112610729 112614875 -76664679 - HERVL-A1 LTR ERVL -1482 4172 1 3230 83 9 7 chr6 112614875 112615318 -76664236 - MLT2A1 LTR ERVL 0 444 1 183 80 0 0 chr6 112616267 112616292 -76663262 + (TAAG)n Simple_repeat Simple_repeat 3 27 0 266 241 0 0 chr6 112616480 112616534 -76663020 + MIR SINE MIR 111 164 -98 24 0 0 0 chr6 112617232 112617256 -76662298 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 112617355 112617380 -76662174 + AT_rich Low_complexity Low_complexity 1 25 0 1892 148 0 4 chr6 112617839 112618116 -76661438 + AluSq SINE Alu 5 280 -33 306 0 0 0 chr6 112618116 112618150 -76661404 + (CA)n Simple_repeat Simple_repeat 1 34 0 899 152 7 7 chr6 112618153 112618298 -76661256 + FRAM SINE Alu 11 155 -21 1704 256 145 51 chr6 112619303 112619563 -76659991 - L1MC4 LINE L1 -653 7389 7155 246 62 0 0 chr6 112619563 112619595 -76659959 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1704 256 145 51 chr6 112619595 112620271 -76659283 - L1MC4 LINE L1 -887 7155 6365 2035 233 23 10 chr6 112620375 112620949 -76658605 - L1ME2 LINE L1 -232 5948 5373 2396 283 77 16 chr6 112620990 112622352 -76657202 - L1ME2 LINE L1 -1082 5064 3566 180 0 0 0 chr6 112622636 112622656 -76656898 + (A)n Simple_repeat Simple_repeat 1 20 0 26 50 0 0 chr6 112623578 112623618 -76655936 + AT_rich Low_complexity Low_complexity 1 40 0 297 0 0 0 chr6 112626572 112626605 -76652949 + (TA)n Simple_repeat Simple_repeat 1 33 0 1214 162 35 9 chr6 112627225 112627454 -76652100 + MER96B DNA MER1_type? 1 235 -182 239 305 42 8 chr6 112627701 112627819 -76651735 + MER103 DNA DNA 11 132 -34 234 62 0 0 chr6 112628389 112628421 -76651133 + (TG)n Simple_repeat Simple_repeat 1 32 0 3253 152 79 13 chr6 112628825 112629445 -76650109 - L1MC1 LINE L1 -38 6295 5635 1462 295 184 23 chr6 112629446 112629553 -76650001 + L2 LINE L2 1074 1162 -2152 228 35 0 0 chr6 112629553 112629582 -76649972 + (CA)n Simple_repeat Simple_repeat 2 30 0 1462 295 184 23 chr6 112629582 112630250 -76649304 + L2 LINE L2 1162 1974 -1340 883 323 48 79 chr6 112630255 112630753 -76648801 + L2 LINE L2 2561 3040 -273 288 0 0 0 chr6 112630753 112630785 -76648769 + (CA)n Simple_repeat Simple_repeat 2 33 0 883 323 48 79 chr6 112630785 112631050 -76648504 + L2 LINE L2 3040 3312 -1 288 217 0 33 chr6 112631481 112631541 -76648013 - Tigger3(Golem) DNA MER2_type -694 2335 2278 * 506 271 0 0 chr6 112631532 112631639 -76647915 - Tigger3(Golem) DNA MER2_type -2921 108 2 13898 140 36 12 chr6 112631648 112633997 -76645557 + Tigger1 DNA MER2_type 1 2404 -14 327 311 107 58 chr6 112634003 112634208 -76645346 - L1ME2 LINE L1 -2884 3262 3069 2177 116 7 0 chr6 112634208 112634502 -76645052 - AluSx SINE Alu -16 296 1 327 311 107 58 chr6 112634502 112634800 -76644754 - L1ME2 LINE L1 -3077 3069 2734 5696 157 26 2 chr6 112635646 112636627 -76642927 + HSMAR2 DNA Mariner 4 1008 -294 839 295 97 42 chr6 112636828 112637341 -76642213 + L1PA14 LINE L1 660 1258 -5529 15265 167 24 67 chr6 112637344 112642611 -76636943 + L1PA14 LINE L1 1396 6785 -27 333 0 0 0 chr6 112643752 112643789 -76635765 + (TG)n Simple_repeat Simple_repeat 1 37 0 212 211 19 0 chr6 112646091 112646143 -76633411 - L2 LINE L2 0 3313 3261 362 243 285 0 chr6 112646171 112646459 -76633095 + L1ME4a LINE L1 5743 6112 -9 1413 206 6 50 chr6 112646763 112647103 -76632451 - L1ME2 LINE L1 -11 6153 5829 1208 257 38 32 chr6 112647104 112647477 -76632077 + L1ME LINE L1 5435 5809 -357 21 43 0 22 chr6 112647632 112647656 -76631898 + AT_rich Low_complexity Low_complexity 1 25 -20 2590 49 0 7 chr6 112647656 112647961 -76631593 - AluY SINE Alu -8 303 1 21 43 0 22 chr6 112647961 112647982 -76631572 + AT_rich Low_complexity Low_complexity 25 45 0 184 191 238 0 chr6 112648646 112648688 -76630866 + L2 LINE L2 3254 3305 -8 523 259 13 38 chr6 112649027 112649185 -76630369 - L2 LINE L2 0 3313 3160 715 272 50 42 chr6 112649506 112649745 -76629809 + LTR16B LTR ERVL 1 241 -223 1675 200 0 10 chr6 112649768 112650073 -76629481 - AluJb SINE Alu -10 302 1 913 353 46 30 chr6 112650486 112651120 -76628434 + HERV16 LTR ERVL 306 949 -4047 790 203 20 5 chr6 112651140 112651342 -76628212 - L1MA4 LINE L1 -9 6291 6087 304 71 0 141 chr6 112651345 112651379 -76628175 + L1MA4A LINE L1 5996 6013 -290 1974 82 4 4 chr6 112651379 112651649 -76627905 + L1PA8 LINE L1 5903 6172 0 304 71 0 141 chr6 112651649 112651699 -76627855 + L1MA4A LINE L1 6013 6068 -235 2425 156 23 3 chr6 112651833 112652408 -76627146 - L1MA4 LINE L1 -608 5692 5105 21 0 0 0 chr6 112653318 112653339 -76626215 + AT_rich Low_complexity Low_complexity 1 21 0 2808 7 0 0 chr6 112654439 112654742 -76624812 - AluYa5 SINE Alu -8 303 1 3603 173 31 20 chr6 112656053 112656794 -76622760 - L1MB2 LINE L1 -3 6168 5420 281 100 120 0 chr6 112656878 112656928 -76622626 + MLT1K LTR MaLR 530 585 -3 360 246 9 42 chr6 112657184 112657343 -76622211 + GA-rich Low_complexity Low_complexity 1 153 0 349 203 14 0 chr6 112657605 112657679 -76621875 + HAL1 LINE L1 2134 2208 -299 22 35 0 0 chr6 112657950 112657979 -76621575 + AT_rich Low_complexity Low_complexity 1 29 0 2020 105 0 37 chr6 112658348 112658685 -76620869 - AluY SINE Alu 0 326 1 22 0 0 0 chr6 112658793 112658815 -76620739 + AT_rich Low_complexity Low_complexity 1 22 0 244 277 15 0 chr6 112659034 112659099 -76620455 + GA-rich Low_complexity Low_complexity 4 69 0 1973 138 3 0 chr6 112659189 112659496 -76620058 - AluSx SINE Alu 0 308 1 645 291 45 23 chr6 112660512 112660732 -76618822 + MIR SINE MIR 15 239 -23 1894 191 39 43 chr6 112660740 112661207 -76618347 - MER31B LTR ERV1 0 466 2 37 52 0 0 chr6 112663527 112663585 -76615969 + AT_rich Low_complexity Low_complexity 1 58 0 359 286 57 20 chr6 112663776 112663948 -76615606 - L1ME3A LINE L1 -15 6155 5977 489 307 28 6 chr6 112663950 112664129 -76615425 - LTR16C LTR ERVL 0 491 309 954 234 47 29 chr6 112664144 112664422 -76615132 - L1ME3A LINE L1 -368 5794 5512 309 89 0 0 chr6 112664544 112664589 -76614965 + (TG)n Simple_repeat Simple_repeat 2 46 0 303 338 19 75 chr6 112664589 112664794 -76614760 - HAL1 LINE L1 -917 1590 1396 24 0 0 0 chr6 112664961 112664985 -76614569 + AT_rich Low_complexity Low_complexity 1 24 0 3366 115 29 4 chr6 112664985 112665531 -76614023 - L1PA13 LINE L1 -6 6157 5598 376 355 9 6 chr6 112665535 112665767 -76613787 - L3 LINE CR1 -959 618 343 27 29 0 0 chr6 112666307 112666341 -76613213 + AT_rich Low_complexity Low_complexity 1 34 0 1727 265 87 45 chr6 112666370 112666608 -76612946 + L1MCb LINE L1 3 230 -5815 1993 129 0 0 chr6 112666608 112666913 -76612641 + AluSx SINE Alu 3 307 0 1727 265 87 45 chr6 112666913 112667489 -76612065 + L1MCb LINE L1 230 854 -5191 4861 201 31 42 chr6 112667502 112668721 -76610833 + L1MC3 LINE L1 5213 5402 -744 1472 208 9 15 chr6 112668726 112669053 -76610501 + L1MC3 LINE L1 6524 6848 -937 2270 108 12 14 chr6 112669146 112669490 -76610064 - L1PA14 LINE L1 -5 6156 5814 180 245 0 0 chr6 112670404 112670457 -76609097 + GA-rich Low_complexity Low_complexity 4 56 0 12630 187 20 17 chr6 112672185 112675432 -76604122 - L1PA14 LINE L1 -329 5832 2574 4305 171 55 6 chr6 112675432 112676285 -76603269 + L1MC3 LINE L1 6891 7785 0 3384 64 14 5 chr6 112677466 112677904 -76601650 - MLT2A1 LTR ERVL -2 442 1 5527 69 7 0 chr6 112677904 112678603 -76600951 - HERVL-A1 LTR ERVL 0 5654 4951 2030 93 0 0 chr6 112678606 112678865 -76600689 + AluY SINE Alu 35 293 -18 4091 68 13 0 chr6 112678896 112679424 -76600130 - HERVL-A1 LTR ERVL -690 4964 4430 186 103 0 0 chr6 112781951 112781980 -76497574 + (GGA)n Simple_repeat Simple_repeat 2 30 0 268 242 32 65 chr6 112782110 112782234 -76497320 - MER103 DNA DNA -8 158 39 356 267 9 0 chr6 112783181 112783286 -76496268 - L1ME3A LINE L1 -23 6147 6042 34 0 0 0 chr6 112784874 112784908 -76494646 + AT_rich Low_complexity Low_complexity 1 34 0 621 248 147 10 chr6 112785018 112785216 -76494338 + MIR SINE MIR 37 261 -1 30 0 0 0 chr6 112785576 112785606 -76493948 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 112788418 112788440 -76491114 + AT_rich Low_complexity Low_complexity 1 22 0 199 197 197 16 chr6 112789256 112789317 -76490237 - MIR SINE MIR -5 257 186 329 187 13 0 chr6 112789554 112789629 -76489925 + GA-rich Low_complexity Low_complexity 1 76 0 272 169 60 72 chr6 112790397 112790480 -76489074 - MER69 DNA AcHobo -9 2517 2436 434 173 12 0 chr6 112790512 112790593 -76488961 - MER69 DNA AcHobo -1116 110 29 381 169 22 11 chr6 112790879 112790968 -76488586 + L1PA16 LINE L1 5945 6034 -132 22 35 0 0 chr6 112790970 112790999 -76488555 + AT_rich Low_complexity Low_complexity 1 29 0 267 246 100 36 chr6 112792502 112792612 -76486942 + L2 LINE L2 2948 3064 -208 26 30 0 0 chr6 112792859 112792892 -76486662 + AT_rich Low_complexity Low_complexity 1 33 0 2509 69 6 3 chr6 112793757 112794104 -76485450 - L1P LINE L1 -4496 1650 1303 702 107 9 18 chr6 112794099 112794211 -76485343 - L1P LINE L1 -5486 660 550 * 13148 48 7 0 chr6 112794211 112796606 -76482948 + L1PA5 LINE L1 3751 6150 -4 2652 93 16 3 chr6 112796637 112797004 -76482550 - THE1C LTR MaLR -3 372 1 569 103 19 0 chr6 112797238 112797345 -76482209 + (TATG)n Simple_repeat Simple_repeat 4 112 0 568 288 81 10 chr6 112798841 112799039 -76480515 - MIR SINE MIR -2 260 49 392 113 0 16 chr6 112799578 112799640 -76479914 - AluS SINE Alu -240 61 1 454 310 107 37 chr6 112799642 112799884 -76479670 - MIR SINE MIR 0 262 4 280 257 131 102 chr6 112800258 112800464 -76479090 + MIR SINE MIR 33 244 -18 244 237 0 0 chr6 112800614 112800673 -76478881 + (TA)n Simple_repeat Simple_repeat 2 60 0 207 0 0 0 chr6 112801135 112801158 -76478396 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 210 250 0 0 chr6 112801988 112802028 -76477526 + polypurine Low_complexity Low_complexity 1 40 0 23 33 0 0 chr6 112803289 112803319 -76476235 + AT_rich Low_complexity Low_complexity 1 30 0 283 250 113 0 chr6 112804031 112804111 -76475443 + L2 LINE L2 3184 3272 0 33 43 0 0 chr6 112805288 112805335 -76474219 + AT_rich Low_complexity Low_complexity 1 47 0 22 88 0 0 chr6 112807367 112807424 -76472130 + AT_rich Low_complexity Low_complexity 1 57 0 412 179 13 0 chr6 112808249 112808327 -76471227 - MER116 DNA Mariner 0 80 2 1441 255 34 32 chr6 112809361 112809835 -76469719 - L1ME1 LINE L1 0 6166 5692 1388 234 39 18 chr6 112809860 112810279 -76469275 + L1ME LINE L1 5189 5618 -548 1021 325 91 41 chr6 112810409 112810526 -76469028 + L2 LINE L2 2203 2313 -1000 2149 108 0 29 chr6 112810526 112810841 -76468713 + AluSx SINE Alu 1 306 -6 1021 325 91 41 chr6 112810841 112811709 -76467845 + L2 LINE L2 2313 3309 -4 6115 181 33 14 chr6 112814130 112815897 -76463657 - L1MC1 LINE L1 0 6333 4547 722 172 0 0 chr6 112816338 112816454 -76463100 - FLAM_C SINE Alu -15 118 3 22 35 0 0 chr6 112816992 112817021 -76462533 + AT_rich Low_complexity Low_complexity 1 29 0 341 223 85 54 chr6 112817330 112817460 -76462094 - LTR16B LTR ERVL -330 134 1 268 275 66 11 chr6 112817537 112817628 -76461926 - MIR SINE MIR -18 244 149 22 35 0 0 chr6 112817632 112817661 -76461893 + AT_rich Low_complexity Low_complexity 1 29 0 3606 210 142 38 chr6 112818131 112819384 -76460170 - Charlie1 DNA MER1_type -80 2681 1 390 346 37 5 chr6 112819536 112819724 -76459830 + MIR SINE MIR 42 235 -27 578 295 76 62 chr6 112819850 112820220 -76459334 - MLT1J LTR MaLR -102 409 35 856 287 91 20 chr6 112822110 112822507 -76457047 + L2 LINE L2 2886 3310 -3 1903 177 22 32 chr6 112823079 112823480 -76456074 + MLT2C1 LTR ERVL 1 397 0 188 348 34 0 chr6 112823515 112823604 -76455950 + MIR SINE MIR 170 261 -1 190 352 0 0 chr6 112823830 112823884 -76455670 + MIR SINE MIR 39 92 -170 24 0 0 0 chr6 112824866 112824890 -76454664 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr6 112825426 112825449 -76454105 + AT_rich Low_complexity Low_complexity 1 23 0 227 258 55 39 chr6 112825518 112825646 -76453908 - L1ME LINE L1 -350 5820 5691 30 0 0 0 chr6 112825681 112825711 -76453843 + AT_rich Low_complexity Low_complexity 1 30 0 192 163 0 0 chr6 112826543 112826586 -76452968 + T-rich Low_complexity Low_complexity 2 44 0 21 36 0 0 chr6 112827328 112827356 -76452198 + AT_rich Low_complexity Low_complexity 1 28 0 799 305 116 49 chr6 112827903 112828474 -76451080 + L2 LINE L2 1801 2409 -905 197 108 27 0 chr6 112828783 112828820 -76450734 + CT-rich Low_complexity Low_complexity 3 40 0 235 348 92 24 chr6 112828861 112829025 -76450529 + L2 LINE L2 2932 3106 -207 192 338 99 0 chr6 112829053 112829124 -76450430 + L2 LINE L2 3199 3276 -37 2277 67 3 17 chr6 112829619 112829917 -76449637 - AluSq SINE Alu -17 296 3 1336 182 61 30 chr6 112830134 112830430 -76449124 - AluJo SINE Alu -7 305 1 24 83 0 12 chr6 112834412 112834465 -76445089 + AT_rich Low_complexity Low_complexity 1 54 -29 2853 84 5 0 chr6 112834465 112834858 -76444696 + L1PA13 LINE L1 5767 6161 -2 24 83 0 12 chr6 112834858 112834888 -76444666 + AT_rich Low_complexity Low_complexity 54 83 0 1780 117 61 0 chr6 112835031 112835295 -76444259 + AluSq SINE Alu 2 281 -32 483 18 0 0 chr6 112835295 112835351 -76444203 + (TAAAA)n Simple_repeat Simple_repeat 5 60 0 225 94 0 0 chr6 112835655 112835687 -76443867 + (TG)n Simple_repeat Simple_repeat 2 33 0 1590 181 3 17 chr6 112835687 112835974 -76443580 - AluJo SINE Alu -27 285 3 425 356 45 6 chr6 112836130 112836307 -76443247 - MIR SINE MIR -55 207 24 23 0 0 0 chr6 112837081 112837104 -76442450 + AT_rich Low_complexity Low_complexity 1 23 0 381 43 0 0 chr6 112838649 112838696 -76440858 + (CAA)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chr6 112839379 112839401 -76440153 + AT_rich Low_complexity Low_complexity 1 22 0 503 269 91 24 chr6 112839470 112839678 -76439876 + MIR SINE MIR 10 231 -31 3152 55 0 0 chr6 112840169 112840569 -76438985 + L1P LINE L1 1878 2277 -3869 2333 56 0 3 chr6 112840733 112841018 -76438536 - AluY SINE Alu -20 291 8 600 321 64 9 chr6 112841578 112841796 -76437758 + MIR SINE MIR 7 236 -26 1427 244 83 14 chr6 112841809 112842329 -76437225 + Charlie7 DNA MER1_type 306 861 -1751 383 273 152 30 chr6 112842518 112842782 -76436772 + MLT1L LTR MaLR 223 518 -97 23 54 0 0 chr6 112845470 112845507 -76434047 + AT_rich Low_complexity Low_complexity 1 37 0 452 236 209 28 chr6 112846754 112846936 -76432618 - MIR SINE MIR 0 262 48 26 50 0 0 chr6 112848909 112848949 -76430605 + AT_rich Low_complexity Low_complexity 1 40 0 5710 109 18 2 chr6 112849909 112851089 -76428465 + L1PB1 LINE L1 4970 6148 -3 24 0 0 0 chr6 112851163 112851187 -76428367 + AT_rich Low_complexity Low_complexity 1 24 0 241 357 82 10 chr6 112853009 112853174 -76426380 - MIR SINE MIR -76 186 12 713 291 5 11 chr6 112853174 112853363 -76426191 - MER5A DNA MER1_type 0 189 2 849 283 90 0 chr6 112853446 112853679 -76425875 + MIR SINE MIR 9 262 0 507 134 0 0 chr6 112855160 112855242 -76424312 + (TA)n Simple_repeat Simple_repeat 1 82 0 1501 237 84 18 chr6 112856922 112857848 -76421706 + L1MEc LINE L1 32 1064 -5332 231 36 0 0 chr6 112858416 112858444 -76421110 + (CA)n Simple_repeat Simple_repeat 1 28 0 346 291 168 17 chr6 112860052 112860231 -76419323 + MIR SINE MIR 41 246 -16 217 368 63 0 chr6 112862364 112862459 -76417095 - L3b LINE CR1 -31 1552 1452 21 57 0 0 chr6 112863212 112863247 -76416307 + AT_rich Low_complexity Low_complexity 1 35 0 442 284 64 9 chr6 112863577 112863686 -76415868 + L2 LINE L2 3194 3308 -5 254 339 55 24 chr6 112863986 112864113 -76415441 + L2 LINE L2 3179 3309 -4 338 226 0 10 chr6 112864135 112864237 -76415317 + GA-rich Low_complexity Low_complexity 4 104 0 244 219 39 0 chr6 112864505 112864633 -76414921 + (TA)n Simple_repeat Simple_repeat 1 133 0 1142 121 12 0 chr6 112865102 112865275 -76414279 + AluSc SINE Alu 133 307 -2 21 0 0 0 chr6 112865437 112865458 -76414096 + AT_rich Low_complexity Low_complexity 1 21 0 2290 215 34 9 chr6 112865711 112866241 -76413313 - MER4D LTR ERV1 -360 543 1 358 301 113 24 chr6 112866431 112866766 -76412788 - L1MEc LINE L1 -2074 4141 3777 569 305 96 25 chr6 112866948 112867519 -76412035 - L1MEc LINE L1 -2886 3329 2718 210 143 0 0 chr6 112867845 112867880 -76411674 + (CATA)n Simple_repeat Simple_repeat 3 37 0 864 202 0 33 chr6 112868312 112868495 -76411059 + FRAM SINE Alu 1 176 0 27 62 0 0 chr6 112868814 112868862 -76410692 + AT_rich Low_complexity Low_complexity 1 48 0 776 175 0 14 chr6 112870967 112871110 -76408444 - FLAM_C SINE Alu -2 141 1 212 268 0 0 chr6 112871554 112871610 -76407944 - L2 LINE L2 -1 3312 3257 1344 240 89 53 chr6 112871864 112872584 -76406970 - L1MEc LINE L1 -4114 2282 1537 603 312 44 22 chr6 112872601 112873047 -76406507 - L1MEc LINE L1 -4832 1383 865 392 279 52 13 chr6 112873063 112873217 -76406337 - L1MEc LINE L1 -5558 838 679 183 42 0 0 chr6 112873383 112873407 -76406147 + (T)n Simple_repeat Simple_repeat 1 24 0 342 261 79 15 chr6 112873463 112873661 -76405893 - L1MEc LINE L1 -6001 395 68 291 228 22 22 chr6 112873671 112873763 -76405791 - L1MEd LINE L1 -5082 1037 946 1970 136 17 0 chr6 112874396 112874690 -76404864 - AluSc SINE Alu -10 299 1 25 0 0 0 chr6 112876699 112876724 -76402830 + AT_rich Low_complexity Low_complexity 1 25 0 237 304 0 0 chr6 112877649 112877718 -76401836 - MER103 DNA DNA -87 79 11 383 348 63 9 chr6 112878390 112878611 -76400943 + L1M4 LINE L1 1275 1507 -4877 2297 116 3 32 chr6 112878611 112879177 -76400377 + MER51A LTR ERV1 1 634 0 961 252 21 0 chr6 112879279 112879521 -76400033 - L1M4 LINE L1 -1410 4736 4490 782 147 112 0 chr6 112879523 112879693 -76399861 + L1MC1 LINE L1 6139 6327 -6 2144 263 53 12 chr6 112879704 112880638 -76398916 + L1M4 LINE L1 3274 4246 -2136 688 289 30 0 chr6 112880743 112880944 -76398610 + Charlie1 DNA MER1_type 31 237 -2524 * 689 175 7 7 chr6 112880929 112881066 -76398488 + Charlie1 DNA MER1_type 2620 2756 -5 430 255 57 9 chr6 112881472 112881610 -76397944 + FLAM_A SINE Alu 4 146 0 24 53 0 0 chr6 112881616 112881654 -76397900 + AT_rich Low_complexity Low_complexity 1 38 0 252 356 74 30 chr6 112882008 112882143 -76397411 - L2 LINE L2 -2 3311 3171 532 354 48 22 chr6 112882291 112882602 -76396952 - L2 LINE L2 -371 2943 2625 450 346 49 25 chr6 112882757 112883043 -76396511 - L2 LINE L2 -906 2408 2116 42771 52 1 1 chr6 112883222 112883480 -76396074 - L1PA4 LINE L1 -1 6154 5897 2342 66 7 3 chr6 112883480 112883781 -76395773 - AluY SINE Alu -9 302 1 42771 52 1 1 chr6 112883781 112889670 -76389884 - L1PA4 LINE L1 -258 5897 9 434 304 123 12 chr6 112889861 112890032 -76389522 - MIR SINE MIR -14 248 59 322 314 38 19 chr6 112890699 112890804 -76388750 + HAL1b LINE L1 501 607 -741 1434 209 54 7 chr6 112891106 112891402 -76388152 + AluJb SINE Alu 3 312 0 323 291 35 28 chr6 112891518 112891659 -76387895 + L1MC1 LINE L1 2427 2568 -3814 345 127 0 0 chr6 112892063 112892118 -76387436 + MLT2D LTR ERVL 60 114 -300 489 170 32 0 chr6 112892126 112892220 -76387334 - MLT2D LTR ERVL -308 106 10 2283 242 101 93 chr6 112892405 112893487 -76386067 + MER52A LTR ERV1 666 1755 0 222 330 66 50 chr6 112894273 112894455 -76385099 - L2 LINE L2 -555 2759 2575 5469 195 98 10 chr6 112895580 112896590 -76382964 + L1MC1 LINE L1 4314 5233 -1336 2566 145 38 21 chr6 112896590 112897011 -76382543 + MSTA LTR MaLR 1 428 0 5469 195 98 10 chr6 112897011 112898051 -76381503 + L1MC1 LINE L1 5233 6569 0 201 89 67 22 chr6 112898196 112898241 -76381313 + (ATAAG)n Simple_repeat Simple_repeat 4 50 0 2275 81 0 0 chr6 112898325 112898632 -76380922 + AluY SINE Alu 1 307 0 234 314 77 41 chr6 112898756 112898925 -76380629 - L3b LINE CR1 -205 1378 1204 21 0 0 0 chr6 112898957 112898978 -76380576 + AT_rich Low_complexity Low_complexity 1 21 0 3483 51 0 13 chr6 112898989 112899443 -76380111 - LTR7 LTR ERV1 -2 448 1 2451 87 48 13 chr6 112899443 112899822 -76379732 - HERVH LTR ERV1 0 7713 7322 1385 126 23 0 chr6 112899820 112900035 -76379519 - HERVH LTR ERV1 -1894 5819 5600 * 4252 139 11 1 chr6 112900036 112900692 -76378862 - HERVH LTR ERV1 -2564 5149 4488 3281 125 0 6 chr6 112900694 112901199 -76378355 - HERVH LTR ERV1 -3720 3993 3492 924 122 27 0 chr6 112901189 112901336 -76378218 - HERVH LTR ERV1 -4423 3290 3140 * 20687 88 9 27 chr6 112901315 112904365 -76375189 - HERVH LTR ERV1 -4718 2995 1 3367 57 0 26 chr6 112904367 112904827 -76374727 - LTR7 LTR ERV1 -2 448 1 204 240 20 0 chr6 112905017 112905067 -76374487 + (CAT)n Simple_repeat Simple_repeat 1 51 0 4720 154 42 26 chr6 112905069 112905958 -76373596 - MER4D LTR ERV1 0 903 1 534 286 114 19 chr6 112906132 112906510 -76373044 - L1M4 LINE L1 -2059 4087 3674 1209 293 96 35 chr6 112906550 112907711 -76371843 - L1M4 LINE L1 -2768 3378 2147 191 280 0 0 chr6 112907875 112907925 -76371629 - MIR SINE MIR -59 203 154 4028 214 26 35 chr6 112907925 112909717 -76369837 - L1P3 LINE L1 -4573 1878 3 200 342 91 30 chr6 112909895 112910094 -76369460 - L2 LINE L2 -839 2475 2265 1043 100 7 0 chr6 112910171 112910351 -76369203 + AluSq SINE Alu 145 325 0 2452 81 0 3 chr6 112910717 112911025 -76368529 - AluSp SINE Alu -6 307 1 2630 55 0 0 chr6 112911107 112911416 -76368138 + AluY SINE Alu 1 309 -2 182 179 15 104 chr6 112913562 112913629 -76365925 - L3 LINE CR1 -205 1372 1312 14008 131 7 13 chr6 112913813 112914051 -76365503 + L1PA10 LINE L1 3001 3239 -2929 2112 145 0 0 chr6 112914051 112914354 -76365200 + AluSx SINE Alu 1 303 -9 14008 131 7 13 chr6 112914354 112917263 -76362291 + L1PA10 LINE L1 3239 6163 -5 220 120 40 0 chr6 112917385 112917435 -76362119 + (TA)n Simple_repeat Simple_repeat 1 52 0 286 308 176 53 chr6 112917585 112917942 -76361612 + L2 LINE L2 2908 3308 -5 234 81 0 0 chr6 112918510 112918547 -76361007 + (A)n Simple_repeat Simple_repeat 1 37 0 317 352 84 28 chr6 112921122 112921301 -76358253 - L2 LINE L2 -510 2804 2616 830 232 42 77 chr6 112921410 112921471 -76358083 - MIR SINE MIR 0 262 200 2300 49 39 39 chr6 112921471 112921779 -76357775 + AluY SINE Alu 3 310 -1 830 232 42 77 chr6 112921779 112921976 -76357578 - MIR SINE MIR -62 200 13 835 218 42 32 chr6 112922069 112922285 -76357269 - MER20 DNA MER1_type 0 219 2 280 279 231 40 chr6 112922319 112922696 -76356858 - L2 LINE L2 -955 2359 1911 868 228 73 0 chr6 112924195 112924401 -76355153 + MER58A DNA MER1_type 4 224 0 371 185 39 85 chr6 112924743 112924873 -76354681 + MER103 DNA DNA 1 124 -42 290 305 0 37 chr6 112925269 112925351 -76354203 + L2 LINE L2 3194 3272 0 195 42 0 0 chr6 112925501 112925525 -76354029 + (TG)n Simple_repeat Simple_repeat 1 24 0 326 341 93 16 chr6 112926187 112926433 -76353121 - L2 LINE L2 -1238 2076 1812 874 246 45 68 chr6 112926490 112926827 -76352727 - MLT1L LTR MaLR -131 484 156 644 124 9 0 chr6 112926947 112927052 -76352502 + AluY SINE Alu 191 296 -15 213 278 19 0 chr6 112928663 112928717 -76350837 + L2 LINE L2 3214 3268 -4 2208 94 0 13 chr6 112928857 112929155 -76350399 + AluY SINE Alu 1 294 -17 2478 67 0 10 chr6 112929776 112930088 -76349466 - AluY SINE Alu -2 309 1 333 0 0 0 chr6 112931393 112931430 -76348124 + (A)n Simple_repeat Simple_repeat 1 37 0 563 297 75 5 chr6 112932175 112932387 -76347167 - MIR SINE MIR -30 232 6 182 404 0 18 chr6 112932452 112932566 -76346988 - L3 LINE CR1 -1068 509 398 2203 98 3 16 chr6 112932575 112932902 -76346652 - AluSx SINE Alu 0 312 1 213 213 0 0 chr6 112933092 112933139 -76346415 + CT-rich Low_complexity Low_complexity 2 48 0 207 315 202 10 chr6 112934487 112934690 -76344864 - MIR SINE MIR -19 243 2 3286 73 2 0 chr6 112935027 112935453 -76344101 + L1PA8 LINE L1 5746 6172 0 583 309 61 6 chr6 112935469 112935650 -76343904 - MIR SINE MIR -31 231 41 839 73 0 0 chr6 112935651 112935760 -76343794 - Alu SINE Alu -5 306 198 482 314 48 24 chr6 112936338 112936590 -76342964 + L1ME1 LINE L1 105 362 -5708 807 281 35 14 chr6 112936618 112936984 -76342570 + L1ME1 LINE L1 511 884 -5186 5157 178 26 19 chr6 112936986 112938011 -76341543 + L1MC1 LINE L1 5287 6318 -15 1628 256 138 33 chr6 112938021 112939126 -76340428 + L1ME1 LINE L1 866 2126 -3995 1581 250 101 0 chr6 112939167 112939683 -76339871 + L1MD3 LINE L1 7419 7986 -9 453 205 128 56 chr6 112939682 112939931 -76339623 + L1ME1 LINE L1 2080 2346 -3734 * 1733 242 18 6 chr6 112939975 112940488 -76339066 + L1ME1 LINE L1 4206 4724 -1356 222 62 0 0 chr6 112940488 112940520 -76339034 + (T)n Simple_repeat Simple_repeat 1 32 0 1116 106 0 0 chr6 112940522 112940683 -76338871 + L1PB1 LINE L1 5991 6151 0 670 211 25 5 chr6 112940765 112941043 -76338511 + Charlie1b DNA MER1_type 70 386 -137 6687 133 8 11 chr6 112941049 112942121 -76337433 + Tigger1 DNA MER2_type 1350 2418 0 2470 238 54 21 chr6 112942129 112943214 -76336340 + L1ME1 LINE L1 4928 6038 -62 13012 101 13 17 chr6 112944551 112947270 -76332284 - L1PA7 LINE L1 0 6154 3441 8866 97 7 3 chr6 112947270 112948574 -76330980 + L1PA7 LINE L1 2139 3447 -2699 1922 121 67 0 chr6 112948756 112949038 -76330516 + AluSq SINE Alu 1 301 -12 239 265 82 61 chr6 112949905 112950003 -76329551 + MIR SINE MIR 85 184 -78 22 35 0 0 chr6 112950055 112950084 -76329470 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr6 112950307 112950329 -76329225 + AT_rich Low_complexity Low_complexity 1 22 0 201 39 0 0 chr6 112950737 112950763 -76328791 + (TG)n Simple_repeat Simple_repeat 1 26 0 1163 141 5 16 chr6 112950773 112950957 -76328597 - AluSg/x SINE Alu -46 264 83 26 50 0 0 chr6 112954070 112954110 -76325444 + AT_rich Low_complexity Low_complexity 1 40 0 520 283 152 49 chr6 112954630 112954959 -76324595 + MLT1J2 LTR MaLR 82 444 -6 252 326 201 0 chr6 112955241 112955425 -76324129 - MIR SINE MIR -2 260 40 21 0 0 0 chr6 112955674 112955695 -76323859 + AT_rich Low_complexity Low_complexity 1 21 0 395 223 75 89 chr6 112955695 112955977 -76323577 - L1MC5 LINE L1 -35 7926 7649 1116 244 46 57 chr6 112958333 112958792 -76320762 - LTR16A1 LTR ERVL 0 457 4 467 298 30 57 chr6 112959335 112959474 -76320080 - HERVL LTR ERVL -633 4852 4711 1458 206 75 37 chr6 112959474 112959848 -76319706 - MLT1B LTR MaLR -2 388 1 467 298 30 57 chr6 112959848 112960039 -76319515 - HERVL LTR ERVL -774 4711 4540 1192 184 53 0 chr6 112960045 112960273 -76319281 + MSTB2 LTR MaLR 1 240 -217 784 196 134 11 chr6 112960464 112960643 -76318911 + MSTB2 LTR MaLR 257 457 0 898 362 41 19 chr6 112960647 112961163 -76318391 - HERVL LTR ERVL -1188 4576 4050 597 329 69 32 chr6 112961214 112961561 -76317993 - HERVL LTR ERVL -1708 3946 3587 737 294 123 54 chr6 112961561 112961894 -76317660 - LTR16A LTR ERVL 0 450 95 2253 316 58 31 chr6 112962039 112962661 -76316893 - HERVL LTR ERVL -3777 1219 615 4645 178 11 17 chr6 112962661 112963530 -76316024 + MER6 DNA MER2_type 1 864 -1 2253 316 58 31 chr6 112963530 112964089 -76315465 - HERVL LTR ERVL -4381 615 6 951 238 32 119 chr6 112964092 112964587 -76314967 - LTR16A1 LTR ERVL -2 455 4 504 257 100 72 chr6 112966151 112966470 -76313084 + L1ME4a LINE L1 5794 6121 0 362 201 93 72 chr6 112966837 112966976 -76312578 + L1ME LINE L1 50 191 -5928 365 309 11 0 chr6 112967164 112967258 -76312296 + L1ME LINE L1 561 655 -5464 458 305 27 32 chr6 112967340 112967527 -76312027 - L1MEc LINE L1 -4680 1716 1531 476 320 48 0 chr6 112968199 112968346 -76311208 + L2 LINE L2 3160 3313 0 230 282 26 0 chr6 112968599 112968677 -76310877 + L1MC4 LINE L1 6624 6703 -1339 1601 172 46 77 chr6 112969124 112969514 -76310040 + MLT1B LTR MaLR 12 389 -1 261 350 112 19 chr6 112969519 112969939 -76309615 + L2 LINE L2 2426 2884 -430 24 0 0 0 chr6 112970067 112970091 -76309463 + AT_rich Low_complexity Low_complexity 1 24 0 906 191 103 26 chr6 112970332 112970526 -76309028 + AluJo SINE Alu 87 295 -17 21 0 0 0 chr6 112970966 112970987 -76308567 + AT_rich Low_complexity Low_complexity 1 21 0 253 270 60 10 chr6 112971043 112971143 -76308411 - Charlie7 DNA MER1_type -2507 105 1 23 33 0 0 chr6 112971160 112971190 -76308364 + AT_rich Low_complexity Low_complexity 1 30 0 331 383 96 14 chr6 112971319 112971528 -76308026 - MIR SINE MIR -17 245 20 797 172 6 61 chr6 112971608 112971788 -76307766 + L1MC1 LINE L1 6164 6333 0 27 0 0 0 chr6 112973280 112973307 -76306247 + AT_rich Low_complexity Low_complexity 1 27 0 693 227 101 25 chr6 112974658 112974856 -76304698 + MER58C DNA MER1_type 3 215 0 392 294 58 37 chr6 112977484 112977783 -76301771 + L1ME2 LINE L1 5635 5940 -224 1622 216 30 59 chr6 112978141 112978646 -76300908 + LTR55 LTR ERV 19 508 -40 789 184 133 36 chr6 112980791 112980987 -76298567 - MER58A DNA MER1_type 0 224 10 1660 178 14 11 chr6 112981189 112981470 -76298084 - AluJo SINE Alu -29 283 2 303 241 0 0 chr6 112983208 112983291 -76296263 + (TA)n Simple_repeat Simple_repeat 2 84 0 227 250 28 0 chr6 112983371 112983443 -76296111 + (TA)n Simple_repeat Simple_repeat 1 74 0 2344 57 3 0 chr6 112983570 112983897 -76295657 - AluY SINE Alu 0 328 1 221 267 13 127 chr6 112984524 112984674 -76294880 - MIR3 SINE MIR -9 199 67 250 364 52 13 chr6 112985124 112985278 -76294276 + L2 LINE L2 2599 2758 -556 267 309 185 38 chr6 112986153 112986493 -76293061 + L2 LINE L2 2924 3313 0 2297 102 0 10 chr6 112987401 112987705 -76291849 - AluSx SINE Alu -11 301 1 332 119 17 0 chr6 112987762 112987821 -76291733 + (TA)n Simple_repeat Simple_repeat 1 60 0 318 323 42 24 chr6 112988671 112988838 -76290716 - HAL1b LINE L1 0 1348 1179 303 345 35 0 chr6 113038859 113038975 -76240579 - MIR SINE MIR -96 166 47 6636 136 10 19 chr6 113039579 113041426 -76238128 + L1MA3 LINE L1 4479 6305 0 1564 104 32 32 chr6 113041747 113041998 -76237556 - L1PA5 LINE L1 -3 6151 5901 32 26 0 0 chr6 113042180 113042219 -76237335 + AT_rich Low_complexity Low_complexity 1 39 0 1033 8 0 0 chr6 113042545 113042666 -76236888 + L1HS LINE L1 5909 6029 -126 252 276 0 35 chr6 113043561 113043648 -76235906 + LTR33A LTR ERVL 440 523 0 263 308 48 19 chr6 113043988 113044092 -76235462 + ERVL LTR ERVL 415 521 -5243 306 302 122 87 chr6 113044533 113044911 -76234643 + ERVL LTR ERVL 1268 1658 -4106 2285 156 51 0 chr6 113044915 113045305 -76234249 + LTR57 LTR ERVL 2 411 0 427 297 60 28 chr6 113045978 113046160 -76233394 - L2 LINE L2 -9 3304 3117 344 111 0 0 chr6 113046165 113046210 -76233344 + AluSq SINE Alu 127 171 -132 5254 134 25 5 chr6 113048768 113049946 -76229608 - L1PA15 LINE L1 0 6868 5652 422 141 0 0 chr6 113049947 113050018 -76229536 - L1PA15 LINE L1 -2111 4738 4668 * 3211 229 6 3 chr6 113050016 113050826 -76228728 - L1PA15 LINE L1 -3305 3544 2731 250 265 60 12 chr6 113052165 113052248 -76227306 + MIR SINE MIR 30 116 -92 10874 200 43 2 chr6 113053566 113056010 -76223544 - L1 LINE L1 -1381 6184 3639 717 176 17 0 chr6 113056009 113056128 -76223426 - L1 LINE L1 -6212 1353 1233 * 2130 123 0 16 chr6 113056132 113056442 -76223112 - THE1B LTR MaLR -59 305 1 3997 191 41 25 chr6 113056442 113057268 -76222286 - L1 LINE L1 -6713 852 14 405 162 10 101 chr6 113057273 113057372 -76222182 - MLT1E1 LTR MaLR -391 263 174 * 654 231 2 0 chr6 113057365 113057490 -76222064 - MLT1E1 LTR MaLR -469 73 8 242 336 0 94 chr6 113057589 113057717 -76221837 + L2 LINE L2 3142 3257 -15 2324 75 14 0 chr6 113057731 113058025 -76221529 + AluY SINE Alu 1 298 -13 1154 211 41 15 chr6 113058408 113058678 -76220876 - MLT1A1 LTR MaLR -2 363 87 38 96 0 0 chr6 113058827 113058942 -76220612 + AT_rich Low_complexity Low_complexity 1 115 0 948 191 51 9 chr6 113059033 113059248 -76220306 - MLT2D LTR ERVL -190 224 1 396 339 40 16 chr6 113059558 113059682 -76219872 - L2 LINE L2 -8 3264 3138 2064 119 41 29 chr6 113060141 113060484 -76219070 - THE1B LTR MaLR -17 347 1 2122 107 7 29 chr6 113060559 113060868 -76218686 + AluY SINE Alu 2 303 -8 227 299 144 0 chr6 113060941 113061038 -76218516 + L3 LINE CR1 976 1086 -491 * 235 313 15 0 chr6 113061033 113061100 -76218454 + MER5A DNA MER1_type 79 146 -43 447 355 116 20 chr6 113061110 113061465 -76218089 + L3 LINE CR1 1091 1479 -98 22 0 0 0 chr6 113061562 113061584 -76217970 + AT_rich Low_complexity Low_complexity 1 22 0 1920 256 29 16 chr6 113061877 113062745 -76216809 - L1M2c LINE L1 -4663 2435 1534 271 213 21 21 chr6 113063779 113063869 -76215685 - L1M2c LINE L1 -6078 1020 818 477 232 32 59 chr6 113063886 113063941 -76215613 + L1MDa LINE L1 1307 1362 -5178 1974 106 0 85 chr6 113063941 113064271 -76215283 + AluSg SINE Alu 1 302 -8 477 232 32 59 chr6 113064271 113064435 -76215119 + L1MDa LINE L1 1362 1520 -5020 1852 193 42 6 chr6 113064441 113064799 -76214755 + MSTB LTR MaLR 2 372 -54 570 269 62 15 chr6 113064813 113065073 -76214481 - L1M1 LINE L1 -4300 3265 2994 2625 20 7 7 chr6 113065073 113065374 -76214180 - AluYb8 SINE Alu -17 301 1 1047 216 59 19 chr6 113065566 113065886 -76213668 - L1MD3 LINE L1 -1 7994 7662 450 263 36 7 chr6 113065896 113066033 -76213521 - L1MC4a LINE L1 -404 7404 7264 659 167 0 8 chr6 113068273 113068399 -76211155 - L1P LINE L1 -892 5254 5130 258 213 115 33 chr6 113068511 113068633 -76210921 + L1ME4a LINE L1 5987 6118 -3 342 295 40 58 chr6 113069070 113069243 -76210311 - MIR SINE MIR -9 253 84 9745 115 115 10 chr6 113071110 113072740 -76206814 - L1PBa LINE L1 -4429 2434 634 936 206 5 0 chr6 113072745 113072939 -76206615 - L1PBa LINE L1 -6666 197 3 22 35 0 0 chr6 113072958 113072987 -76206567 + AT_rich Low_complexity Low_complexity 1 29 0 1009 121 0 30 chr6 113073108 113073119 -76206435 + L1MA2 LINE L1 5695 5705 -599 1226 113 10 10 chr6 113073119 113073313 -76206241 - L1MA1 LINE L1 -4 6298 6105 1009 121 0 30 chr6 113073313 113073467 -76206087 + L1MA2 LINE L1 5705 5855 -449 216 354 38 13 chr6 113073897 113073976 -76205578 - L2 LINE L2 -1 3271 3191 411 286 73 25 chr6 113075353 113075473 -76204081 - MIR SINE MIR -62 146 37 2155 119 0 3 chr6 113075881 113076175 -76203379 - AluSc SINE Alu -16 293 1 2923 283 66 29 chr6 113076368 113077691 -76201863 + L1MEc LINE L1 25 1396 -5000 921 220 116 4 chr6 113078903 113079162 -76200392 + Charlie4 DNA MER1_type 4 291 -1670 1008 163 17 62 chr6 113079183 113079423 -76200131 + L1P LINE L1 4316 4544 -1602 1208 216 11 14 chr6 113079451 113079738 -76199816 + L1P LINE L1 4984 5269 -877 1943 203 3 8 chr6 113080361 113080726 -76198828 - MLT1A1 LTR MaLR -2 363 1 435 234 65 0 chr6 113080962 113081069 -76198485 + MER94 DNA DNA 19 132 -2 259 307 89 0 chr6 113081071 113081172 -76198382 + MIR SINE MIR 147 256 -6 315 276 112 0 chr6 113081572 113081670 -76197884 + L2 LINE L2 3204 3312 -1 195 342 63 54 chr6 113083578 113083689 -76195865 + MIR3 SINE MIR 50 161 -47 214 296 148 0 chr6 113084629 113084737 -76194817 - MIR3 SINE MIR -75 133 10 293 200 0 0 chr6 113084926 113084986 -76194568 + L1MA6 LINE L1 6236 6295 -5 2359 73 0 0 chr6 113084997 113085297 -76194257 + AluSg SINE Alu 1 300 -10 809 79 0 0 chr6 113085711 113085812 -76193742 - AluS SINE Alu -212 101 1 597 167 19 19 chr6 113085837 113085945 -76193609 + FLAM_A SINE Alu 1 108 -34 2016 57 4 0 chr6 113087419 113087663 -76191891 + AluSp SINE Alu 54 298 -15 2335 68 3 3 chr6 113089740 113090035 -76189519 + AluSq SINE Alu 1 295 -18 25 0 0 0 chr6 113090035 113090060 -76189494 + AT_rich Low_complexity Low_complexity 1 25 0 246 232 43 0 chr6 113090106 113090175 -76189379 - MER117 DNA MER1_type 0 197 126 * 390 302 48 32 chr6 113090154 113090343 -76189211 - MER117 DNA MER1_type -4 193 2 308 301 121 23 chr6 113090957 113091130 -76188424 + MIR SINE MIR 70 259 -3 475 308 27 7 chr6 113091531 113091677 -76187877 - MIR SINE MIR -113 149 1 22 0 0 0 chr6 113092225 113092247 -76187307 + AT_rich Low_complexity Low_complexity 1 22 0 38 51 0 0 chr6 113092534 113092593 -76186961 + AT_rich Low_complexity Low_complexity 1 59 0 2339 65 13 3 chr6 113093315 113093654 -76185900 - AluY SINE Alu 0 342 1 779 302 145 30 chr6 113093757 113094316 -76185238 - L2 LINE L2 0 3313 2698 3907 219 39 55 chr6 113094328 113096704 -76182850 + L1MC/D LINE L1 3545 5762 -571 * 9423 171 67 23 chr6 113096695 113098881 -76180673 + L1MB7 LINE L1 3122 5403 -743 1233 138 27 18 chr6 113098887 113099025 -76180529 + Tigger7 DNA MER2_type 2361 2503 -84 1249 184 17 9 chr6 113099025 113099258 -76180296 + MER46A DNA MER2_type 2 236 0 1233 138 27 18 chr6 113099258 113099343 -76180211 + Tigger7 DNA MER2_type 2503 2586 -1 1235 193 90 113 chr6 113099343 113099525 -76180029 + L1MB7 LINE L1 5695 5880 -304 2637 114 26 42 chr6 113099525 113099982 -76179572 + L1PB2 LINE L1 5696 6145 -6 1235 193 90 113 chr6 113099982 113100301 -76179253 + L1MB7 LINE L1 5880 6184 0 1920 137 3 7 chr6 113100521 113100814 -76178740 - AluSx SINE Alu -17 295 4 22 35 0 0 chr6 113101067 113101096 -76178458 + AT_rich Low_complexity Low_complexity 1 29 0 2460 63 17 0 chr6 113101804 113102104 -76177450 + AluSc SINE Alu 3 307 -2 620 324 88 36 chr6 113102269 113102660 -76176894 + L1M3d LINE L1 414 1088 -5215 2514 68 0 3 chr6 113102663 113102974 -76176580 + AluY SINE Alu 1 310 -1 1634 246 44 68 chr6 113103361 113103482 -76176072 + L1MB2 LINE L1 825 947 -5356 333 0 0 0 chr6 113103482 113103519 -76176035 + (CA)n Simple_repeat Simple_repeat 2 38 0 1634 246 44 68 chr6 113103519 113104196 -76175358 + L1MB2 LINE L1 947 1787 -4516 9778 216 57 45 chr6 113104201 113104546 -76175008 + L1MB2 LINE L1 2344 2684 -3723 246 62 0 0 chr6 113104546 113104578 -76174976 + (TA)n Simple_repeat Simple_repeat 2 33 0 9778 216 57 45 chr6 113104578 113106420 -76173134 + L1MB2 LINE L1 2684 4503 -1904 282 29 0 0 chr6 113106420 113106455 -76173099 + (CA)n Simple_repeat Simple_repeat 2 36 0 9778 216 57 45 chr6 113106455 113106757 -76172797 + L1MB2 LINE L1 4503 4800 -1607 988 148 25 10 chr6 113106757 113106953 -76172601 - L1MA4 LINE L1 -6 6294 6096 9778 216 57 45 chr6 113106953 113108427 -76171127 + L1MB2 LINE L1 4800 6373 -34 544 230 6 19 chr6 113108608 113108769 -76170785 + L1MD3 LINE L1 6960 7118 -877 452 223 11 21 chr6 113108770 113108865 -76170689 + MLT1F1 LTR MaLR 36 130 -445 2313 199 65 16 chr6 113108866 113109423 -76170131 + L1MD3 LINE L1 7411 7994 -1 749 281 57 4 chr6 113109511 113109739 -76169815 + MIR SINE MIR 12 251 -11 201 333 103 48 chr6 113109973 113110138 -76169416 - MIR SINE MIR -42 220 47 370 319 17 62 chr6 113110886 113111111 -76168443 + MIR SINE MIR 2 213 -49 272 306 59 0 chr6 113111086 113111171 -76168383 - MIR SINE MIR -4 258 169 * 323 250 0 0 chr6 113111320 113111380 -76168174 + L2 LINE L2 3153 3212 -60 247 200 108 62 chr6 113111848 113111978 -76167576 - HAL1 LINE L1 -2316 191 56 461 326 34 6 chr6 113112262 113112437 -76167117 - L3 LINE CR1 -13 1564 1385 402 254 101 124 chr6 113112514 113112852 -76166702 + LTR67 LTR ERVL 225 554 -3 24 85 0 0 chr6 113112857 113112916 -76166638 + AT_rich Low_complexity Low_complexity 1 59 0 26 0 8 0 chr6 113113274 113113339 -76166215 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr6 113114625 113114653 -76164901 + AT_rich Low_complexity Low_complexity 1 28 0 669 101 0 0 chr6 113114819 113114918 -76164636 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 316 320 20 10 chr6 113115148 113115248 -76164306 - MIR SINE MIR -63 145 45 1973 132 4 0 chr6 113115338 113115647 -76163907 + AluSx SINE Alu 1 310 0 315 0 0 0 chr6 113116103 113116138 -76163416 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 320 33 98 chr6 113116754 113116907 -76162647 + MIR SINE MIR 46 188 -74 337 223 78 29 chr6 113118531 113118634 -76160920 + MIR SINE MIR 113 220 -42 21 36 0 0 chr6 113122073 113122101 -76157453 + AT_rich Low_complexity Low_complexity 1 28 0 185 238 48 0 chr6 113123526 113123568 -76155986 - L2 LINE L2 -24 3289 3246 248 0 31 0 chr6 113124473 113124505 -76155049 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 709 214 7 0 chr6 113124508 113124653 -76154901 - FRAM SINE Alu -30 146 1 230 360 47 0 chr6 113125095 113125181 -76154373 + MIR SINE MIR 48 137 -125 252 59 0 0 chr6 113125198 113125232 -76154322 + (TA)n Simple_repeat Simple_repeat 1 34 0 462 205 51 0 chr6 113126451 113126567 -76152987 - MER69 DNA AcHobo -25 2501 2380 910 192 42 6 chr6 113126567 113126734 -76152820 + MER2 DNA MER2_type 2 174 -171 295 214 71 0 chr6 113126893 113126949 -76152605 + MER2 DNA MER2_type 286 345 0 267 254 0 0 chr6 113127091 113127150 -76152404 - MER69 DNA AcHobo -2467 59 1 219 274 48 24 chr6 113127150 113127234 -76152320 + MER5A DNA MER1_type 47 132 -57 248 247 39 39 chr6 113127304 113127381 -76152173 + L2 LINE L2 3188 3264 -8 519 258 75 27 chr6 113127825 113128011 -76151543 - Charlie8 DNA MER1_type -2186 231 37 214 306 133 31 chr6 113128149 113128247 -76151307 + L2 LINE L2 3204 3311 -2 2865 177 34 65 chr6 113128607 113129313 -76150241 - L1MD3 LINE L1 -2 7993 7310 445 271 111 52 chr6 113130426 113130738 -76148816 - MLT1K LTR MaLR -150 438 42 2155 117 3 16 chr6 113130747 113131064 -76148490 + AluSq SINE Alu 1 313 0 1411 184 97 84 chr6 113131877 113132268 -76147286 + MSTD LTR MaLR 1 396 0 205 281 88 0 chr6 113132305 113132362 -76147192 + MIR SINE MIR 79 140 -122 1550 193 21 3 chr6 113132373 113132658 -76146896 - AluJo SINE Alu -22 290 1 366 318 53 74 chr6 113133860 113134143 -76145411 + L1ME3A LINE L1 142 418 -5701 1535 173 7 63 chr6 113134233 113134533 -76145021 - MER68 LTR ERV1 -37 525 243 1178 285 72 34 chr6 113134541 113135338 -76144216 + L1ME3A LINE L1 4545 5371 -758 824 271 163 19 chr6 113135345 113135829 -76143725 + L1ME3A LINE L1 5398 5951 -202 1115 252 51 175 chr6 113135966 113136635 -76142919 - L2 LINE L2 -385 2929 2333 594 229 7 14 chr6 113136635 113136779 -76142775 + MER104 DNA Tc2 1 143 -37 1115 252 51 175 chr6 113136779 113137255 -76142299 - L2 LINE L2 -981 2333 1800 357 271 105 23 chr6 113137277 113137410 -76142144 + L2 LINE L2 3162 3305 -8 322 211 0 0 chr6 113137412 113137469 -76142085 - L2 LINE L2 -1524 1790 1734 288 275 65 105 chr6 113137468 113137668 -76141886 + L3 LINE CR1 1258 1449 -128 * 21 0 0 0 chr6 113138793 113138814 -76140740 + AT_rich Low_complexity Low_complexity 1 21 0 226 331 155 0 chr6 113141113 113141255 -76138299 + MIR SINE MIR 34 197 -65 420 160 0 0 chr6 113141359 113141434 -76138120 - L1PA16 LINE L1 -6 6160 6086 27 62 0 0 chr6 113141882 113141930 -76137624 + AT_rich Low_complexity Low_complexity 1 48 0 310 42 42 0 chr6 113142031 113142079 -76137475 + (TA)n Simple_repeat Simple_repeat 2 51 0 28 0 0 0 chr6 113142478 113142506 -76137048 + AT_rich Low_complexity Low_complexity 1 28 0 30 69 0 0 chr6 113142840 113142898 -76136656 + AT_rich Low_complexity Low_complexity 1 58 0 207 0 0 0 chr6 113143721 113143744 -76135810 + (TTA)n Simple_repeat Simple_repeat 2 24 0 195 162 0 0 chr6 113144528 113144565 -76134989 + (TA)n Simple_repeat Simple_repeat 2 38 0 2764 10 0 6 chr6 113147226 113147538 -76132016 - AluYb8 SINE Alu -8 310 1 1356 235 191 11 chr6 113147739 113148199 -76131355 - L1MC4a LINE L1 -2 7806 7264 201 319 68 118 chr6 113148916 113149195 -76130359 + L2 LINE L2 2994 3258 -14 1762 171 0 11 chr6 113149525 113149811 -76129743 + AluJo SINE Alu 1 283 -29 309 172 0 0 chr6 113149811 113149875 -76129679 + GA-rich Low_complexity Low_complexity 1 64 0 229 292 146 44 chr6 113150354 113150491 -76129063 - L2 LINE L2 -23 3249 3099 22 0 0 0 chr6 113151739 113151761 -76127793 + AT_rich Low_complexity Low_complexity 1 22 0 1703 219 57 0 chr6 113151938 113152307 -76127247 + L1MDa LINE L1 19 408 -6132 1200 199 71 18 chr6 113152304 113152641 -76126913 + L1MDa LINE L1 1082 1436 -5104 * 847 262 11 14 chr6 113152664 113152913 -76126641 + MLT1D LTR MaLR 262 447 -3 331 232 221 0 chr6 113152941 113153036 -76126518 + L1M4 LINE L1 3688 3803 -2343 4995 244 58 20 chr6 113153038 113154654 -76124900 + L1M4 LINE L1 2769 4445 -1701 882 195 0 0 chr6 113154659 113154833 -76124721 + L1MD1 LINE L1 6064 6237 -5 316 307 127 18 chr6 113154911 113155077 -76124477 + MIR SINE MIR 22 205 -57 380 340 25 19 chr6 113155432 113155594 -76123960 + MER102b DNA MER1_type 1 163 -178 733 138 9 0 chr6 113155598 113155714 -76123840 + AluSp/q SINE Alu 194 310 -3 323 271 32 101 chr6 113155723 113155911 -76123643 + MER102b DNA MER1_type 163 337 -4 336 321 146 46 chr6 113156006 113156147 -76123407 + L2 LINE L2 2572 2697 -575 838 221 43 39 chr6 113156147 113156405 -76123149 + MIR SINE MIR 4 262 0 336 321 146 46 chr6 113156405 113156700 -76122854 + L2 LINE L2 2697 3051 -221 728 224 25 7 chr6 113156785 113156951 -76122603 + MIR SINE MIR 40 206 -56 566 325 46 4 chr6 113157423 113157660 -76121894 + MIR SINE MIR 14 260 -2 550 0 0 0 chr6 113157672 113157737 -76121817 + AluY SINE Alu 230 294 -17 431 367 97 20 chr6 113157904 113158511 -76121043 - L2 LINE L2 -375 2939 2286 251 378 20 26 chr6 113158706 113158857 -76120697 - MIR SINE MIR -33 229 80 754 281 13 13 chr6 113159119 113159343 -76120211 + MIR SINE MIR 11 234 -28 364 85 0 0 chr6 113159387 113159434 -76120120 + ERVL-B1 LTR ERVL 2536 2582 -3182 * 9520 142 19 35 chr6 113159426 113161221 -76118333 + ERVL-B1 LTR ERVL 3567 5372 -392 20210 181 26 48 chr6 113161236 113161309 -76118245 + L1MA1 LINE L1 17 90 -7631 315 0 0 0 chr6 113161309 113161344 -76118210 + (CA)n Simple_repeat Simple_repeat 2 36 0 20210 181 26 48 chr6 113161344 113169168 -76110386 + L1MA1 LINE L1 90 7720 -1 2206 105 3 0 chr6 113169375 113169671 -76109883 - AluSp SINE Alu -16 297 1 375 96 0 0 chr6 113169693 113169745 -76109809 - MADE1 DNA Mariner 0 80 29 1868 124 26 89 chr6 113169777 113169972 -76109582 + ERVL-B1 LTR ERVL 5359 5514 -250 1597 184 42 21 chr6 113169972 113170308 -76109246 - MER2 DNA MER2_type 0 344 2 1868 124 26 89 chr6 113170308 113170538 -76109016 + ERVL-B1 LTR ERVL 5514 5757 -7 1722 184 31 16 chr6 113170538 113170931 -76108623 + MLT2B1 LTR ERVL 1 443 -72 14218 147 25 10 chr6 113170942 113171631 -76107923 + Tigger1 DNA MER2_type 1 678 -1740 3357 102 40 14 chr6 113171631 113172129 -76107425 - MER75 DNA T2_type -3 511 1 14218 147 25 10 chr6 113172129 113173821 -76105733 + Tigger1 DNA MER2_type 678 2418 0 425 185 25 19 chr6 113173825 113173987 -76105567 + (TA)n Simple_repeat Simple_repeat 1 163 0 410 159 38 29 chr6 113174058 113174402 -76105152 + (TA)n Simple_repeat Simple_repeat 1 347 0 279 195 37 12 chr6 113174415 113174497 -76105057 + (TA)n Simple_repeat Simple_repeat 1 84 0 2765 64 46 13 chr6 113174503 113174894 -76104660 - L1PA8 LINE L1 0 6172 5769 4828 72 5 2 chr6 113174894 113176246 -76103308 - L1PA5 LINE L1 -2 6152 4716 294 74 0 18 chr6 113176246 113176298 -76103256 + MLT2B1 LTR ERVL 483 518 -2 233 255 71 28 chr6 113177664 113177799 -76101755 + MER93b LTR ERV1 3 138 -280 225 288 0 0 chr6 113177847 113177906 -76101648 + MER57A LTR ERV1 135 193 -210 557 284 47 17 chr6 113177941 113178173 -76101381 + MER57A LTR ERV1 165 403 0 1030 148 9 78 chr6 113180018 113180235 -76099319 + AluJb SINE Alu 85 286 -26 8961 141 16 26 chr6 113180290 113181354 -76098200 + Tigger2 DNA MER2_type 1 1047 -1671 5029 21 0 0 chr6 113181354 113181933 -76097621 + L1PA4 LINE L1 5574 6152 -3 8961 141 16 26 chr6 113181933 113182385 -76097169 + Tigger2 DNA MER2_type 1047 1502 -1216 5311 129 12 20 chr6 113182379 113183211 -76096343 + Tigger2 DNA MER2_type 1702 2526 -192 * 1213 138 26 0 chr6 113183345 113183540 -76096014 + Tigger2 DNA MER2_type 2507 2706 -12 22 56 0 0 chr6 113183945 113183981 -76095573 + AT_rich Low_complexity Low_complexity 1 36 0 182 299 75 0 chr6 113184809 113184876 -76094678 - MIR SINE MIR -101 161 90 576 218 0 0 chr6 113185085 113185195 -76094359 - FRAM SINE Alu -66 110 1 283 267 148 30 chr6 113185353 113185454 -76094100 - L2 LINE L2 0 3313 3201 2070 143 36 0 chr6 113185678 113186013 -76093541 + MER7A DNA MER2_type 1 345 -1 572 311 134 20 chr6 113186015 113186359 -76093195 + L3b LINE CR1 1108 1490 -93 372 340 33 13 chr6 113186490 113186643 -76092911 + L3b LINE CR1 1213 1368 -215 301 264 52 39 chr6 113187342 113187497 -76092057 - L1ME4a LINE L1 -4 6117 5961 400 330 26 18 chr6 113187552 113187779 -76091775 - L1ME4a LINE L1 -295 5826 5598 463 196 0 10 chr6 113187809 113187906 -76091648 + L1MC4 LINE L1 5797 5892 -1916 2250 99 0 7 chr6 113187906 113188200 -76091354 + AluSq SINE Alu 1 292 -21 2329 256 118 32 chr6 113188255 113189266 -76090288 + L1MC4 LINE L1 6945 8042 0 308 306 111 30 chr6 113189282 113189517 -76090037 - L1ME4a LINE L1 -2242 5566 5313 21 0 0 0 chr6 113190468 113190489 -76089065 + AT_rich Low_complexity Low_complexity 1 21 0 276 367 22 33 chr6 113191372 113191552 -76088002 + L2 LINE L2 2917 3094 -178 1542 184 11 4 chr6 113191719 113191980 -76087574 + AluJo SINE Alu 1 263 -49 330 180 17 11 chr6 113191980 113192161 -76087393 + (TA)n Simple_repeat Simple_repeat 1 182 0 207 114 0 0 chr6 113192602 113192637 -76086917 + (TG)n Simple_repeat Simple_repeat 1 35 0 207 0 0 0 chr6 113192845 113192868 -76086686 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 293 293 72 81 chr6 113192874 113193096 -76086458 - L2 LINE L2 -43 3229 3010 204 40 0 0 chr6 113193904 113193929 -76085625 + (TG)n Simple_repeat Simple_repeat 2 26 0 1174 109 0 0 chr6 113194214 113194370 -76085184 - AluSc SINE Alu -17 292 137 252 343 118 69 chr6 113194483 113194815 -76084739 + L2 LINE L2 2833 3180 -92 273 57 0 0 chr6 113195946 113195981 -76083573 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1500 54 0 0 chr6 113196381 113196565 -76082989 + L1PA5 LINE L1 5955 6138 -16 320 64 21 0 chr6 113196565 113196612 -76082942 + (TA)n Simple_repeat Simple_repeat 1 48 0 314 297 198 34 chr6 113197013 113197167 -76082387 + L1MC/D LINE L1 5266 5393 -2415 1849 167 0 0 chr6 113197167 113197476 -76082078 + AluSx SINE Alu 1 309 0 314 297 198 34 chr6 113197476 113197785 -76081769 + L1MC/D LINE L1 5393 5806 -2002 38 22 0 0 chr6 113197787 113197832 -76081722 + AT_rich Low_complexity Low_complexity 1 45 0 303 92 46 0 chr6 113197991 113198056 -76081498 + (TA)n Simple_repeat Simple_repeat 1 68 0 189 0 0 0 chr6 113199002 113199023 -76080531 + (TA)n Simple_repeat Simple_repeat 2 22 0 2045 117 0 0 chr6 113199023 113199297 -76080257 - AluSc SINE Alu -35 274 1 254 298 0 75 chr6 113199951 113200045 -76079509 + MIR SINE MIR 18 104 -104 304 326 39 4 chr6 113200088 113200184 -76079370 + MIR SINE MIR 51 142 -66 186 43 0 0 chr6 113200184 113200207 -76079347 + (ATG)n Simple_repeat Simple_repeat 1 23 0 437 0 19 0 chr6 113200207 113200260 -76079294 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 304 326 39 4 chr6 113200260 113200289 -76079265 + MIR SINE MIR 141 183 -25 3535 129 25 43 chr6 113200618 113200819 -76078735 - Tigger1 DNA MER2_type 0 2418 2215 650 201 0 50 chr6 113200819 113200958 -76078596 + FLAM_C SINE Alu 2 133 0 3535 129 25 43 chr6 113200958 113201386 -76078168 - Tigger1 DNA MER2_type -203 2215 1800 43755 37 3 6 chr6 113201391 113207560 -76071994 + L1PA3 LINE L1 1 6154 -1 2154 128 3 3 chr6 113207560 113207888 -76071666 - Tigger1 DNA MER2_type -608 1810 1483 5825 154 14 27 chr6 113207889 113208967 -76070587 + L1PA7 LINE L1 4250 5320 -841 3313 76 2 5 chr6 113208967 113209410 -76070144 + L1PA7 LINE L1 5706 6151 -3 5825 154 14 27 chr6 113209410 113209512 -76070042 + L1PA7 LINE L1 5320 5422 -739 5836 94 25 15 chr6 113209512 113209733 -76069821 + L1PA13 LINE L1 5177 5394 -769 2427 69 0 16 chr6 113209733 113210037 -76069517 + AluY SINE Alu 2 300 -11 5836 94 25 15 chr6 113210037 113210122 -76069432 + L1PA13 LINE L1 5394 5477 -686 225 0 0 0 chr6 113210122 113210147 -76069407 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 5836 94 25 15 chr6 113210147 113210798 -76068756 + L1PA13 LINE L1 5477 6144 -19 9188 127 24 10 chr6 113210797 113212242 -76067312 - Tigger1 DNA MER2_type -932 1486 23 386 383 28 24 chr6 113212370 113212621 -76066933 + MLT1K LTR MaLR 100 351 -237 266 355 78 99 chr6 113213738 113214020 -76065534 - L2 LINE L2 0 3272 2997 296 191 0 0 chr6 113215422 113215469 -76064085 - Alu SINE Alu -256 47 1 1458 142 13 22 chr6 113220645 113220877 -76058677 + AluJb SINE Alu 57 286 -26 2240 95 0 0 chr6 113221569 113221854 -76057700 - AluSx SINE Alu -19 293 9 432 345 99 9 chr6 113221969 113222201 -76057353 + MIR SINE MIR 1 253 -9 706 211 34 11 chr6 113222231 113222406 -76057148 - MIR SINE MIR -3 259 81 23 54 0 0 chr6 113224878 113224915 -76054639 + AT_rich Low_complexity Low_complexity 1 37 0 493 99 68 0 chr6 113224949 113225110 -76054444 + (TA)n Simple_repeat Simple_repeat 1 172 0 2246 96 0 10 chr6 113225110 113225411 -76054143 - AluY SINE Alu -13 298 1 454 245 229 37 chr6 113225969 113226454 -76053100 + L1ME4a LINE L1 5521 6098 -23 366 295 67 87 chr6 113226714 113227026 -76052528 + L2 LINE L2 2967 3272 0 394 273 96 59 chr6 113227463 113227734 -76051820 + L1ME4a LINE L1 5601 5881 -240 303 248 204 0 chr6 113227927 113228064 -76051490 + L1ME4a LINE L1 5956 6120 -1 1680 170 24 18 chr6 113228116 113228446 -76051108 + L1MC1 LINE L1 6002 6333 0 436 261 125 43 chr6 113228456 113228590 -76050964 + L1ME4a LINE L1 5668 5790 -331 243 0 0 0 chr6 113228590 113228617 -76050937 + (TA)n Simple_repeat Simple_repeat 1 27 0 436 261 125 43 chr6 113228617 113228899 -76050655 + L1ME4a LINE L1 5790 6118 -3 307 301 148 17 chr6 113229988 113230164 -76049390 - MIR SINE MIR -43 219 21 308 283 10 20 chr6 113230189 113230288 -76049266 + MER5B DNA MER1_type 1 98 -80 375 41 0 0 chr6 113230478 113230527 -76049027 + (TG)n Simple_repeat Simple_repeat 2 50 0 270 154 0 0 chr6 113231549 113231588 -76047966 + U2 snRNA snRNA 3 41 -147 263 266 13 13 chr6 113231841 113231920 -76047634 + (CATATA)n Simple_repeat Simple_repeat 3 81 0 439 299 120 27 chr6 113233677 113233861 -76045693 - MIR SINE MIR -16 246 46 447 279 85 23 chr6 113234505 113234681 -76044873 - MIR3 SINE MIR -3 205 19 225 295 65 43 chr6 113234675 113234814 -76044740 + L2 LINE L2 2161 2302 -1012 * 216 0 0 0 chr6 113236096 113236120 -76043434 + (T)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr6 113237315 113237338 -76042216 + (T)n Simple_repeat Simple_repeat 1 23 0 1076 243 129 39 chr6 113238953 113239063 -76040491 + LTR16A1 LTR ERVL 1 100 -357 1729 178 18 77 chr6 113239063 113239451 -76040103 + MLT1A1 LTR MaLR 1 365 0 1076 243 129 39 chr6 113239451 113239751 -76039803 + LTR16A1 LTR ERVL 100 448 -9 2150 105 7 7 chr6 113240299 113240595 -76038959 + AluSx SINE Alu 1 296 -16 1024 164 73 109 chr6 113240595 113240734 -76038820 - L1ME1 LINE L1 -139 6027 5884 1845 167 3 0 chr6 113240734 113241027 -76038527 - AluSx SINE Alu -17 295 2 1024 164 73 109 chr6 113241027 113241207 -76038347 - L1ME1 LINE L1 -282 5884 5718 * 2187 226 100 32 chr6 113241204 113242551 -76037003 - L1ME2 LINE L1 -216 5948 4506 1879 164 0 28 chr6 113242551 113242869 -76036685 - AluJb SINE Alu -3 309 1 2187 226 100 32 chr6 113242869 113242880 -76036674 - L1ME2 LINE L1 -1658 4506 4497 180 377 0 0 chr6 113243010 113243063 -76036491 - L3b LINE CR1 -3 1580 1528 513 243 189 27 chr6 113243581 113243766 -76035788 - MER58A DNA MER1_type -1 223 9 2578 47 0 0 chr6 113244520 113244817 -76034737 - AluY SINE Alu -14 297 1 1497 212 18 39 chr6 113244906 113245288 -76034266 - MLT1A2 LTR MaLR 0 374 1 2199 110 0 0 chr6 113246088 113246379 -76033175 - AluSx SINE Alu -21 291 1 459 290 42 81 chr6 113246452 113246785 -76032769 + L2 LINE L2 2708 3024 -289 311 20 0 61 chr6 113246801 113246850 -76032704 + (TA)n Simple_repeat Simple_repeat 1 46 0 249 33 0 0 chr6 113246849 113246879 -76032675 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 200 287 117 0 chr6 113246921 113247015 -76032539 - L2 LINE L2 0 3313 3209 758 188 0 0 chr6 113247301 113247434 -76032120 + FLAM_A SINE Alu 1 133 0 2409 82 0 3 chr6 113247685 113247990 -76031564 - AluSc SINE Alu -3 306 3 360 240 103 79 chr6 113248051 113248343 -76031211 + L1MB7 LINE L1 4303 4601 -1545 2113 140 0 37 chr6 113248771 113249120 -76030434 + MER1B DNA MER1_type 1 336 -1 27 29 0 0 chr6 113249239 113249273 -76030281 + AT_rich Low_complexity Low_complexity 1 34 0 1800 125 64 4 chr6 113249318 113249598 -76029956 + AluSx SINE Alu 1 297 -15 237 269 0 0 chr6 113249771 113249823 -76029731 - L1MEc LINE L1 -6223 173 122 3011 202 15 72 chr6 113250080 113251068 -76028486 + L1MB7 LINE L1 4565 5497 -687 826 168 0 2 chr6 113251068 113251277 -76028277 + AluJ SINE Alu 45 297 -15 3179 183 17 16 chr6 113251281 113251921 -76027633 + L1MB7 LINE L1 5490 6130 -54 2074 125 7 0 chr6 113252356 113252653 -76026901 + AluSq SINE Alu 9 307 -6 2353 75 0 3 chr6 113253428 113253723 -76025831 + AluY SINE Alu 1 294 -17 2026 114 3 7 chr6 113253733 113254030 -76025524 + AluSx SINE Alu 5 300 -12 1671 222 145 8 chr6 113254474 113255100 -76024454 - L1M4 LINE L1 -2877 3269 2558 450 280 75 14 chr6 113256871 113257085 -76022469 + MARNA DNA Mariner 148 374 -212 482 261 86 27 chr6 113257879 113258101 -76021453 - L1MC5 LINE L1 -36 7925 7691 1951 99 66 0 chr6 113258111 113258383 -76021171 + AluSg SINE Alu 1 290 -20 520 311 88 26 chr6 113258902 113259289 -76020265 + L1MC4a LINE L1 4892 5298 -848 1306 263 58 45 chr6 113259291 113259485 -76020069 + L1MC4a LINE L1 5308 5498 -2310 1574 117 0 0 chr6 113259485 113259699 -76019855 - AluSg/x SINE Alu -14 296 83 1306 263 58 45 chr6 113259699 113260017 -76019537 + L1MC4a LINE L1 5498 5827 -1981 689 146 8 23 chr6 113260076 113260206 -76019348 + L1PA15 LINE L1 5737 5864 -301 979 284 42 26 chr6 113260991 113261371 -76018183 + L1MC4a LINE L1 5502 5887 -1921 704 123 8 23 chr6 113261376 113261506 -76018048 + L1PB4 LINE L1 5737 5864 -292 2387 84 0 16 chr6 113261766 113262077 -76017477 + AluY SINE Alu 1 306 -5 2170 123 33 38 chr6 113262118 113262484 -76017070 - THE1B LTR MaLR 0 364 1 9135 105 38 75 chr6 113262491 113262668 -76016886 - THE1B-int LTR MaLR -7 1573 1391 2341 87 3 3 chr6 113262668 113262966 -76016588 + AluY SINE Alu 1 298 -13 9135 105 38 75 chr6 113262966 113263863 -76015691 - THE1B-int LTR MaLR -189 1391 577 2430 102 0 0 chr6 113263863 113264166 -76015388 - AluSc SINE Alu -6 303 1 9135 105 38 75 chr6 113264166 113264723 -76014831 - THE1B-int LTR MaLR -1003 577 1 2668 76 31 6 chr6 113264723 113265078 -76014476 - THE1B LTR MaLR 0 364 1 203 280 40 0 chr6 113265078 113265128 -76014426 + L2 LINE L2 3252 3303 -10 1128 155 0 32 chr6 113265299 113265486 -76014068 + AluJb SINE Alu 132 312 0 23 0 0 0 chr6 113265559 113265582 -76013972 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 113265600 113265621 -76013933 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr6 113266194 113266232 -76013322 + AT_rich Low_complexity Low_complexity 1 38 0 298 312 92 28 chr6 113266511 113266661 -76012893 + MIR SINE MIR 20 175 -62 459 258 25 37 chr6 113267028 113267191 -76012363 + MIR SINE MIR 2 162 -100 269 355 62 12 chr6 113267478 113267660 -76011894 - MIR SINE MIR -44 218 30 830 227 77 0 chr6 113268462 113268656 -76010898 + MER63A DNA MER1_type 2 210 0 247 298 48 12 chr6 113268657 113268741 -76010813 + MER5B DNA MER1_type 69 155 -23 393 353 34 5 chr6 113269333 113269537 -76010017 - LTR16C LTR ERVL -32 459 250 208 216 0 0 chr6 113270151 113270188 -76009366 + polypurine Low_complexity Low_complexity 3 39 0 761 185 79 17 chr6 113270406 113270584 -76008970 - MER5A DNA MER1_type 0 189 1 1367 139 83 70 chr6 113270610 113270912 -76008642 + AluJb SINE Alu 1 306 -6 2162 126 7 0 chr6 113270914 113271207 -76008347 + AluSq SINE Alu 4 298 -15 183 80 0 0 chr6 113271568 113271593 -76007961 + (A)n Simple_repeat Simple_repeat 1 25 0 766 262 67 5 chr6 113271933 113272173 -76007381 + MIR SINE MIR 3 261 -1 208 340 31 21 chr6 113272527 113272624 -76006930 + MIR SINE MIR 91 188 -74 2273 100 0 0 chr6 113272632 113272949 -76006605 + AluSg SINE Alu 1 310 0 448 280 189 0 chr6 113274636 113274811 -76004743 - L3 LINE CR1 -15 1562 1355 2344 94 0 3 chr6 113275810 113276108 -76003446 + AluSg SINE Alu 1 297 -13 2205 67 0 14 chr6 113276185 113276502 -76003052 + AluY SINE Alu 1 313 0 2139 139 0 0 chr6 113277092 113277394 -76002160 + AluSx SINE Alu 1 302 -10 1662 259 65 35 chr6 113277464 113278069 -76001485 + MLT1E2 LTR MaLR 1 623 -3 22 0 0 0 chr6 113278649 113278671 -76000883 + AT_rich Low_complexity Low_complexity 1 22 0 1562 196 156 12 chr6 113279127 113279493 -76000061 - MLT1D LTR MaLR 0 505 68 2929 166 22 22 chr6 113279493 113280042 -75999512 - MER44D DNA MER2_type -1 604 1 1562 196 156 12 chr6 113280042 113280099 -75999455 - MLT1D LTR MaLR -437 68 21 292 402 59 16 chr6 113280575 113280829 -75998725 + L2 LINE L2 2596 2860 -454 211 283 79 72 chr6 113281155 113281307 -75998247 + MER5B DNA MER1_type 2 154 -24 468 242 188 7 chr6 113281600 113281749 -75997805 + MER5A DNA MER1_type 11 186 -3 201 301 96 24 chr6 113281749 113281799 -75997755 - MER5A DNA MER1_type -119 70 15 284 216 49 88 chr6 113281974 113282028 -75997526 + MIR SINE MIR 51 101 -161 2484 66 0 7 chr6 113282028 113282332 -75997222 - AluY SINE Alu -9 302 1 284 216 49 88 chr6 113282332 113282379 -75997175 + MIR SINE MIR 101 148 -114 1741 135 10 83 chr6 113282485 113282797 -75996757 - AluSx SINE Alu -23 289 1 21 36 0 0 chr6 113283132 113283160 -75996394 + AT_rich Low_complexity Low_complexity 1 28 0 234 344 0 0 chr6 113283361 113283425 -75996129 - MIR SINE MIR -126 82 19 27 0 0 0 chr6 113283426 113283453 -75996101 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr6 113286380 113286407 -75993147 + AT_rich Low_complexity Low_complexity 1 27 0 249 108 0 0 chr6 113286525 113286562 -75992992 + (TA)n Simple_repeat Simple_repeat 2 38 0 299 344 82 0 chr6 113286916 113287038 -75992516 - L2 LINE L2 0 3272 3141 413 265 116 20 chr6 113287185 113287332 -75992222 + MIR SINE MIR 88 248 -14 238 333 43 71 chr6 113287347 113287488 -75992066 + L2 LINE L2 3008 3144 -128 723 233 0 7 chr6 113287493 113287639 -75991915 + MER20 DNA MER1_type 1 145 -74 4107 146 101 45 chr6 113287648 113288309 -75991245 + L1MC3 LINE L1 6742 7365 -420 1795 176 21 0 chr6 113288309 113288599 -75990955 + AluJb SINE Alu 1 296 -16 1998 85 55 24 chr6 113288602 113288895 -75990659 + AluSc SINE Alu 1 302 -7 4107 146 101 45 chr6 113288895 113289211 -75990343 + L1MC3 LINE L1 7366 7778 -7 582 224 113 36 chr6 113289334 113289597 -75989957 + MLT1H1 LTR MaLR 13 257 -298 408 88 0 0 chr6 113289617 113289674 -75989880 + (GA)n Simple_repeat Simple_repeat 2 58 0 308 243 112 47 chr6 113289726 113289940 -75989614 + MLT1H1 LTR MaLR 309 536 -6 824 311 190 31 chr6 113290565 113291506 -75988048 + L2 LINE L2 1781 2871 -443 1062 295 87 38 chr6 113291860 113292693 -75986861 + L1MEc LINE L1 37 925 -5471 2259 103 0 0 chr6 113292693 113292983 -75986571 + AluSc SINE Alu 1 290 -19 1062 295 87 38 chr6 113292983 113293115 -75986439 + L1MEc LINE L1 925 1049 -5347 1700 182 6 28 chr6 113293169 113293487 -75986067 + AluJb SINE Alu 1 311 -1 203 363 106 55 chr6 113294139 113294431 -75985123 + L2 LINE L2 2948 3254 -18 438 226 75 105 chr6 113294502 113294581 -75984973 + MER90 LTR ERV1 70 150 -464 2181 102 0 3 chr6 113294581 113294893 -75984661 + AluSg SINE Alu 3 313 0 438 226 75 105 chr6 113294893 113295174 -75984380 + MER90 LTR ERV1 150 420 -194 477 257 140 17 chr6 113295302 113295481 -75984073 - MIR SINE MIR -34 228 28 1588 239 71 162 chr6 113295895 113296159 -75983395 + L2 LINE L2 1756 2042 -1271 1698 196 0 0 chr6 113296159 113296445 -75983109 - AluJo SINE Alu -26 286 1 1588 239 71 162 chr6 113296445 113296517 -75983037 + L2 LINE L2 2042 2119 -1194 1937 164 0 23 chr6 113296517 113296822 -75982732 - AluJo SINE Alu -14 298 1 1588 239 71 162 chr6 113296822 113298143 -75981411 + L2 LINE L2 2119 3313 0 2141 126 113 38 chr6 113298171 113298325 -75981229 + MSTA LTR MaLR 1 142 -286 345 93 0 0 chr6 113298325 113298379 -75981175 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 1859 128 0 18 chr6 113298381 113298662 -75980892 - AluSx SINE Alu -36 276 1 2141 126 113 38 chr6 113298662 113298902 -75980652 + MSTA LTR MaLR 142 428 0 2152 117 35 46 chr6 113299296 113299589 -75979965 + THE1B LTR MaLR 1 291 -73 2276 113 0 3 chr6 113299589 113299900 -75979654 - AluSx SINE Alu -2 310 1 2152 117 35 46 chr6 113299900 113299974 -75979580 + THE1B LTR MaLR 291 364 0 1673 187 0 23 chr6 113300155 113300460 -75979094 - AluJo SINE Alu -12 300 3 225 323 43 63 chr6 113301213 113301516 -75978038 + L1MDa LINE L1 34 330 -6210 204 40 0 0 chr6 113301731 113301756 -75977798 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 360 282 103 6 chr6 113301846 113302020 -75977534 + L1MDa LINE L1 729 919 -5611 1086 279 38 15 chr6 113302272 113302749 -75976805 + L1MDa LINE L1 1068 1555 -4988 843 200 74 56 chr6 113303083 113303298 -75976256 - MER58A DNA MER1_type 0 224 6 290 298 44 0 chr6 113303333 113303447 -75976107 + MLT1J LTR MaLR 376 494 -17 183 412 0 29 chr6 113303506 113303608 -75975946 - L2 LINE L2 -244 3069 2971 1041 252 89 40 chr6 113303646 113304051 -75975503 + MLT1J LTR MaLR 64 488 -23 441 387 39 17 chr6 113304077 113304427 -75975127 - L2 LINE L2 -243 3070 2702 387 0 0 0 chr6 113304865 113304908 -75974646 + (CA)n Simple_repeat Simple_repeat 2 44 0 253 293 24 12 chr6 113305138 113305220 -75974334 - L2 LINE L2 0 3313 3231 1843 70 62 8 chr6 113305230 113305473 -75974081 + AluY SINE Alu 1 256 -55 406 238 0 38 chr6 113305541 113305646 -75973908 + L1MC2 LINE L1 6207 6307 -37 734 175 0 70 chr6 113305652 113305795 -75973759 + FLAM_A SINE Alu 1 133 0 1918 145 3 3 chr6 113305972 113306254 -75973300 - AluSx SINE Alu -28 284 3 1266 204 0 28 chr6 113306258 113306513 -75973041 - AluJo SINE Alu -4 308 61 431 217 44 139 chr6 113306546 113306726 -75972828 - MLT1E LTR MaLR 0 593 431 1453 235 56 77 chr6 113306837 113307395 -75972159 - MER77 LTR ERV1 -7 598 53 984 262 67 69 chr6 113307466 113307886 -75971668 - MLT1E LTR MaLR -174 419 1 206 317 102 30 chr6 113308531 113308698 -75970856 + L3b LINE CR1 1266 1444 -139 214 240 40 0 chr6 113308741 113308791 -75970763 + L3 LINE CR1 241 292 -1285 2245 124 0 0 chr6 113308890 113309196 -75970358 - AluSx SINE Alu -6 306 1 1368 318 100 22 chr6 113309213 113310076 -75969478 + L2 LINE L2 1160 2089 -1225 3476 226 63 19 chr6 113310105 113311262 -75968292 - L1M4 LINE L1 -1104 5042 3835 2438 209 26 122 chr6 113511278 113512302 -75767252 + L1P LINE L1 4068 4993 -1153 312 332 186 0 chr6 113513053 113513252 -75766302 - MIR SINE MIR -6 256 21 2318 95 0 25 chr6 113513374 113513690 -75765864 - AluY SINE Alu -1 310 3 4896 90 4 23 chr6 113513864 113514596 -75764958 + L1PB1 LINE L1 5434 6151 0 2288 227 71 55 chr6 113514644 113514896 -75764658 - HERVL74 LTR ERVL -3894 1791 1545 1501 188 39 45 chr6 113514896 113515204 -75764350 + AluJo SINE Alu 1 306 -6 2288 227 71 55 chr6 113515204 113515666 -75763888 - HERVL74 LTR ERVL -4140 1545 1065 949 136 0 22 chr6 113515703 113515887 -75763667 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 669 155 0 0 chr6 113515889 113516018 -75763536 + CT-rich Low_complexity Low_complexity 2 130 0 615 203 108 6 chr6 113516035 113516193 -75763361 - HERVL74 LTR ERVL -2590 966 793 284 258 91 0 chr6 113516273 113516339 -75763215 + tRNA-Met-i tRNA tRNA 2 73 -2 1342 148 74 0 chr6 113516398 113516615 -75762939 + HUERS-P1 LTR ERV1 6348 6580 -957 * 1764 99 18 4 chr6 113516607 113516879 -75762675 + HUERS-P1 LTR ERV1 4550 4825 -1438 398 213 0 0 chr6 113516879 113516954 -75762600 + MSTB LTR MaLR 33 107 -319 266 224 0 0 chr6 113516959 113517017 -75762537 + MSTB LTR MaLR 50 107 -319 1324 167 134 4 chr6 113517018 113517293 -75762261 + MSTA LTR MaLR 47 357 -71 486 143 0 0 chr6 113517324 113517401 -75762153 - L1PA10 LINE L1 -1 6167 6091 1995 235 104 52 chr6 113517501 113518291 -75761263 - L1M4 LINE L1 -2163 3983 3235 1316 122 80 0 chr6 113518291 113518504 -75761050 + MER30 DNA MER1_type 1 230 0 1995 235 104 52 chr6 113518504 113518914 -75760640 - L1M4 LINE L1 -2911 3235 2848 2051 119 3 22 chr6 113518914 113519226 -75760328 - AluSq SINE Alu -3 310 5 1995 235 104 52 chr6 113519226 113519504 -75760050 - L1M4 LINE L1 -3298 2848 2366 445 319 95 37 chr6 113519831 113520157 -75759397 - L1MEc LINE L1 -6016 380 36 1509 187 7 11 chr6 113520755 113521038 -75758516 - AluJo SINE Alu -13 299 18 28 0 0 0 chr6 113521641 113521669 -75757885 + AT_rich Low_complexity Low_complexity 1 28 0 430 127 35 150 chr6 113521872 113521931 -75757623 - L1M1 LINE L1 -611 5560 5592 386 154 0 13 chr6 113521931 113522009 -75757545 - L1MB3 LINE L1 -13 6170 6094 430 127 35 150 chr6 113522009 113522139 -75757415 - L1M1 LINE L1 -578 5593 5450 1492 204 94 18 chr6 113522255 113522584 -75756970 + MLT2B1 LTR ERVL 121 474 -46 750 243 8 4 chr6 113522684 113522863 -75756691 + HERVL74 LTR ERVL 1861 2029 -1527 4141 246 45 39 chr6 113523012 113523040 -75756514 + HERVL74 LTR ERVL 2091 2117 -3568 1669 189 0 7 chr6 113523040 113523336 -75756218 - AluJo SINE Alu -18 294 1 4141 246 45 39 chr6 113523336 113524580 -75754974 + HERVL74 LTR ERVL 2117 3371 -2314 829 296 73 0 chr6 113525075 113525376 -75754178 + LTR53 LTR ERVL 189 511 -8 218 336 111 49 chr6 113526007 113526233 -75753321 - MIR SINE MIR -5 257 18 211 286 55 22 chr6 113526522 113526613 -75752941 + MER5B DNA MER1_type 1 94 -84 197 354 0 0 chr6 113526749 113526797 -75752757 - L2 LINE L2 -22 3250 3203 1316 203 4 20 chr6 113527559 113527841 -75751713 + AluJb SINE Alu 35 312 0 190 299 35 23 chr6 113528324 113528411 -75751143 - MER5B DNA MER1_type -90 88 1 1457 221 58 10 chr6 113529551 113529945 -75749609 - L1M4 LINE L1 -789 5357 4945 303 255 27 122 chr6 113530081 113530375 -75749179 - L1MC5 LINE L1 -76 7885 7620 2216 101 0 10 chr6 113530580 113530878 -75748676 + AluSg1 SINE Alu 1 295 -14 1022 181 6 0 chr6 113531029 113531200 -75748354 - FRAM SINE Alu -5 171 1 812 241 11 0 chr6 113531265 113531439 -75748115 + L1MD2 LINE L1 6138 6313 -46 24 53 0 0 chr6 113532526 113532564 -75746990 + AT_rich Low_complexity Low_complexity 1 38 0 263 172 0 194 chr6 113533804 113533838 -75745716 + MER33 DNA MER1_type 6 12 -2573 1702 179 7 14 chr6 113533838 113534128 -75745426 - AluJo SINE Alu -16 296 9 263 172 0 194 chr6 113534128 113534186 -75745368 + MER33 DNA MER1_type 12 80 -244 22 0 0 0 chr6 113534791 113534813 -75744741 + AT_rich Low_complexity Low_complexity 1 22 0 585 192 58 19 chr6 113535283 113535439 -75744115 + MER112 DNA MER1_type 1 162 -98 236 250 0 26 chr6 113536406 113536482 -75743072 + L1ME4a LINE L1 5979 6052 -69 24 32 0 0 chr6 113537040 113537071 -75742483 + AT_rich Low_complexity Low_complexity 1 31 0 828 246 58 76 chr6 113537202 113537596 -75741958 - L1MC4a LINE L1 -1825 5983 5597 289 170 0 0 chr6 113537824 113537871 -75741683 - tRNA-Arg-CGC tRNA tRNA -28 48 2 21 36 0 0 chr6 113538808 113538836 -75740718 + AT_rich Low_complexity Low_complexity 1 28 0 1063 129 13 0 chr6 113540091 113540246 -75739308 + FRAM SINE Alu 1 152 -24 1730 158 7 0 chr6 113540604 113540883 -75738671 - AluSx SINE Alu -31 281 1 226 118 0 0 chr6 113542732 113542766 -75736788 - LTR43 LTR ERV1 -453 149 116 342 180 330 0 chr6 113543285 113543385 -75736169 + MER20 DNA MER1_type 6 138 -81 411 305 40 34 chr6 113543503 113543680 -75735874 - MER5A DNA MER1_type -9 180 3 423 311 47 7 chr6 113544050 113544198 -75735356 - L3 LINE CR1 -1047 530 377 597 227 116 55 chr6 113544264 113544625 -75734929 - L1ME LINE L1 -5082 988 606 720 198 0 0 chr6 113544793 113544919 -75734635 + FLAM_C SINE Alu 1 126 -17 509 75 0 25 chr6 113544921 113545001 -75734553 + MADE1 DNA Mariner 1 78 -2 1094 197 63 60 chr6 113545013 113545297 -75734257 + AluJo SINE Alu 2 286 -16 884 113 20 7 chr6 113545397 113545548 -75734006 - MER53 DNA DNA -1 188 36 23 0 0 0 chr6 113546378 113546401 -75733153 + AT_rich Low_complexity Low_complexity 1 23 0 201 239 46 146 chr6 113547129 113547259 -75732295 + L2 LINE L2 3197 3313 0 2161 127 0 0 chr6 113547627 113547927 -75731627 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr6 113549498 113549520 -75730034 + AT_rich Low_complexity Low_complexity 1 22 0 329 264 64 71 chr6 113549579 113549905 -75729649 + L1ME LINE L1 1135 1458 -4938 252 0 0 0 chr6 113549943 113549971 -75729583 + (A)n Simple_repeat Simple_repeat 1 28 0 2282 73 0 0 chr6 113550050 113550338 -75729216 + L1PA4 LINE L1 4 291 -5855 * 26307 49 2 0 chr6 113550332 113554439 -75725115 + L1PA4 LINE L1 2036 6150 -5 2692 93 5 0 chr6 113554434 113554801 -75724753 + L1PA10 LINE L1 5476 5844 -324 * 1819 266 179 21 chr6 113554937 113555888 -75723666 + L1ME LINE L1 4121 5243 -972 1801 81 0 0 chr6 113555888 113556111 -75723443 + AluY SINE Alu 81 303 -8 1819 266 179 21 chr6 113556111 113556172 -75723382 + L1ME LINE L1 5243 5293 -922 852 181 34 17 chr6 113556168 113556345 -75723209 + L1ME LINE L1 5545 5724 -509 * 208 137 39 0 chr6 113557055 113557106 -75722448 + CT-rich Low_complexity Low_complexity 2 54 0 533 261 22 8 chr6 113557301 113557435 -75722119 + MIR SINE MIR 17 152 -110 2901 161 79 17 chr6 113557450 113558083 -75721471 + L1MB7 LINE L1 5497 6168 -16 195 279 23 47 chr6 113558098 113558184 -75721370 + MIR SINE MIR 179 262 0 302 273 109 16 chr6 113560588 113560716 -75718838 + MIR SINE MIR 119 258 -4 302 336 34 20 chr6 113561540 113561686 -75717868 - MER5A DNA MER1_type -6 183 36 273 340 28 35 chr6 113561562 113561706 -75717848 + MER5A DNA MER1_type 43 185 -4 * 4478 116 13 26 chr6 113562453 113562857 -75716697 + L1PA16 LINE L1 5393 5801 -365 2213 158 59 10 chr6 113562857 113563263 -75716291 - MSTA LTR MaLR -2 426 1 4478 116 13 26 chr6 113563263 113563521 -75716033 + L1PA16 LINE L1 5801 6046 -120 1928 141 133 13 chr6 113563521 113563903 -75715651 - MSTA LTR MaLR 0 428 1 4478 116 13 26 chr6 113563903 113564014 -75715540 + L1PA16 LINE L1 6046 6157 -9 38 68 0 0 chr6 113564014 113564087 -75715467 + AT_rich Low_complexity Low_complexity 1 73 0 735 173 141 0 chr6 113565192 113565348 -75714206 + MER58A DNA MER1_type 34 211 -13 1880 90 0 4 chr6 113565635 113565917 -75713637 + AluY SINE Alu 39 319 0 353 336 9 9 chr6 113566460 113566567 -75712987 - MER5A DNA MER1_type -23 166 60 1106 195 44 46 chr6 113566571 113566981 -75712573 - LTR37A LTR ERV1 0 426 18 303 191 16 0 chr6 113567519 113567582 -75711972 - L1MA6 LINE L1 -14 7246 7183 903 182 42 5 chr6 113567587 113567779 -75711775 - L1MA6 LINE L1 -293 6967 6769 712 181 34 13 chr6 113567791 113567940 -75711614 + MSTA LTR MaLR 1 152 -274 * 730 219 7 0 chr6 113567935 113568081 -75711473 + MSTA LTR MaLR 282 428 0 8604 188 35 10 chr6 113568083 113570294 -75709260 - L1MA6 LINE L1 -512 6748 4466 1481 217 38 3 chr6 113570294 113570584 -75708970 - AluJo SINE Alu -5 307 8 8604 188 35 10 chr6 113570584 113570888 -75708666 - L1MA6 LINE L1 -2794 4466 4171 7579 10 0 5 chr6 113570932 113572029 -75707525 - L1HS LINE L1 -1 6154 5064 * 15944 24 0 0 chr6 113572027 113573998 -75705556 + L1HS LINE L1 3091 5061 -1085 3331 268 44 21 chr6 113573993 113577166 -75702388 - L1MA6 LINE L1 -2926 4180 922 * 373 229 9 29 chr6 113577198 113577303 -75702251 - L1MA6 LINE L1 -6921 109 7 273 318 56 9 chr6 113577449 113577556 -75701998 + MIR SINE MIR 80 191 -71 1391 101 0 5 chr6 113577788 113577986 -75701568 - L1PA7 LINE L1 -3 6151 5955 415 224 112 21 chr6 113578132 113578275 -75701279 - MER67D LTR ERV1 -3 511 356 889 179 68 11 chr6 113578287 113578477 -75701077 - MER67C LTR ERV1 -307 403 203 340 232 18 62 chr6 113578478 113578590 -75700964 - MLT1I LTR MaLR -240 169 63 369 308 41 20 chr6 113579055 113579201 -75700353 + MIR SINE MIR 24 172 -90 677 203 0 0 chr6 113581068 113581191 -75698363 - AluJb SINE Alu -187 125 3 250 353 26 17 chr6 113581609 113581725 -75697829 + MIR SINE MIR 24 140 -122 219 340 68 0 chr6 113581904 113582007 -75697547 - MIR SINE MIR -73 189 80 1653 197 77 35 chr6 113582750 113583232 -75696322 - MLT1D LTR MaLR -3 502 1 957 220 49 106 chr6 113583553 113583940 -75695614 - MLT1A1 LTR MaLR 0 365 1 323 267 0 11 chr6 113584471 113584561 -75694993 + LTR67 LTR ERVL 434 522 -35 769 310 75 36 chr6 113585406 113585822 -75693732 - MLT1K LTR MaLR -10 578 147 702 258 58 26 chr6 113585824 113586014 -75693540 - MER91A DNA MER1_type 0 196 1 6946 238 36 6 chr6 113586600 113588852 -75690702 + L1M4c LINE L1 2187 4511 -1871 338 226 32 11 chr6 113588852 113588945 -75690609 + MER2 DNA MER2_type 1 95 -250 332 188 16 0 chr6 113588945 113589009 -75690545 - MER2 DNA MER2_type 0 345 281 3730 209 60 16 chr6 113589079 113590134 -75689420 + L1M4c LINE L1 4512 5612 -770 2640 196 57 32 chr6 113590234 113590274 -75689280 + L1MA9 LINE L1 5576 5614 -698 1705 179 38 0 chr6 113590274 113590565 -75688989 + AluJo SINE Alu 1 302 -10 2640 196 57 32 chr6 113590565 113591243 -75688311 + L1MA9 LINE L1 5614 6312 0 1348 190 74 3 chr6 113591416 113591885 -75687669 - Charlie1b DNA MER1_type -3 520 22 1127 167 33 70 chr6 113592291 113592591 -75686963 - AluJo SINE Alu -17 295 7 1516 198 7 7 chr6 113592659 113592942 -75686612 - AluJb SINE Alu -23 289 7 29 0 0 0 chr6 113593219 113593248 -75686306 + AT_rich Low_complexity Low_complexity 1 29 0 974 229 109 37 chr6 113594322 113594671 -75684883 - MLT1A2 LTR MaLR 0 374 1 287 280 92 72 chr6 113594974 113595181 -75684373 - MIR SINE MIR -26 236 26 278 252 162 90 chr6 113596421 113596655 -75682899 - MIR SINE MIR -11 251 1 220 277 45 54 chr6 113598438 113598550 -75681004 + MIR SINE MIR 36 146 -62 336 353 61 43 chr6 113598725 113599054 -75680500 + L2 LINE L2 1565 1899 -1415 1036 214 123 3 chr6 113599062 113599394 -75680160 - MLT1B LTR MaLR -10 380 9 886 110 49 3 chr6 113599435 113599748 -75679806 + CT-rich Low_complexity Low_complexity 1 327 0 369 246 76 8 chr6 113599758 113599876 -75679678 - L1PB4 LINE L1 -3 6153 6028 556 299 123 73 chr6 113599947 113600034 -75679520 + L2 LINE L2 2077 2158 -1156 1404 136 41 0 chr6 113600034 113600254 -75679300 - MER30 DNA MER1_type -1 229 1 556 299 123 73 chr6 113600254 113600819 -75678735 + L2 LINE L2 2158 2761 -553 262 356 69 0 chr6 113600830 113600931 -75678623 + L2 LINE L2 3187 3294 -19 349 281 258 0 chr6 113601107 113601235 -75678319 + MER5A DNA MER1_type 18 178 -11 296 45 23 0 chr6 113601705 113601749 -75677805 + MADE1 DNA Mariner 34 78 -2 188 241 76 25 chr6 113602512 113602591 -75676963 - MIR SINE MIR -68 194 112 845 141 13 188 chr6 113602613 113602644 -75676910 + L1MB4 LINE L1 5420 5455 -728 288 0 0 0 chr6 113602644 113602676 -75676878 + (CA)n Simple_repeat Simple_repeat 2 33 0 845 141 13 188 chr6 113602676 113602729 -75676825 + L1MB4 LINE L1 5455 5516 -667 1487 133 54 120 chr6 113602729 113603046 -75676508 + AluSx SINE Alu 2 297 -15 845 141 13 188 chr6 113603046 113603300 -75676254 + L1MB4 LINE L1 5516 5700 -483 377 214 12 0 chr6 113603314 113603398 -75676156 - 7SLRNA srpRNA srpRNA -6 314 230 1201 232 12 0 chr6 113603778 113604032 -75675522 - 7SLRNA srpRNA srpRNA -61 259 3 1791 192 33 13 chr6 113604033 113604468 -75675086 + L1MB4 LINE L1 5685 6117 -63 195 42 0 0 chr6 113604477 113604501 -75675053 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 2995 164 23 19 chr6 113605370 113605552 -75674002 - Ricksha DNA DNA -39 3207 3027 2098 117 0 3 chr6 113605552 113605851 -75673703 + AluY SINE Alu 1 298 -13 2995 164 23 19 chr6 113605851 113606341 -75673213 - Ricksha DNA DNA -219 3027 2620 727 142 1 0 chr6 113606446 113611638 -75667916 - CER Satellite Satellite 0 5198 1 230 174 0 0 chr6 113611652 113611698 -75667856 + CER Satellite Satellite 46 91 -5 23736 68 1 0 chr6 113611710 113615967 -75663587 - L1P LINE L1 -1882 4264 2 1231 231 41 7 chr6 113616058 113616348 -75663206 + AluJo SINE Alu 2 301 -11 1596 183 126 11 chr6 113616550 113616932 -75662622 - MSTB LTR MaLR 0 426 1 2234 126 0 0 chr6 113617201 113617502 -75662052 - AluY SINE Alu -9 302 2 184 241 26 95 chr6 113618248 113618364 -75661190 + MIR SINE MIR 153 260 -2 234 272 19 48 chr6 113618592 113618695 -75660859 + MER5A DNA MER1_type 31 130 -59 1908 144 13 7 chr6 113618727 113619032 -75660522 + AluSq SINE Alu 3 309 -4 221 255 75 28 chr6 113619062 113619168 -75660386 - MER5B DNA MER1_type -1 177 67 4396 215 24 16 chr6 113619189 113620352 -75659202 + L1PB4 LINE L1 4190 5362 -784 3876 204 17 13 chr6 113620355 113621188 -75658366 + L1PB4 LINE L1 5321 6156 0 2011 146 10 0 chr6 113621189 113621491 -75658063 + AluSg SINE Alu 1 305 -5 37 23 0 0 chr6 113621557 113621601 -75657953 + AT_rich Low_complexity Low_complexity 1 44 0 3186 220 64 29 chr6 113623168 113624559 -75654995 + L1MA9 LINE L1 4255 5693 -598 1811 198 80 46 chr6 113624565 113625105 -75654449 + L1MA9 LINE L1 5755 6312 0 17476 53 3 3 chr6 113625179 113627394 -75652160 - L1P LINE L1 -1210 4936 2721 7188 53 5 2 chr6 113627394 113628569 -75650985 + L1PA4 LINE L1 4976 6152 -3 29 47 0 0 chr6 113631185 113631228 -75648326 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr6 113632221 113632254 -75647300 + AT_rich Low_complexity Low_complexity 1 33 0 1024 172 5 56 chr6 113632444 113632659 -75646895 - L1MA6 LINE L1 -572 5728 5525 * 2164 200 56 2 chr6 113632653 113632691 -75646863 + L1MA6 LINE L1 5742 5777 -523 222 91 0 0 chr6 113632691 113632724 -75646830 + (CA)n Simple_repeat Simple_repeat 2 34 0 2164 200 56 2 chr6 113632724 113633149 -75646405 + L1MA6 LINE L1 5777 6230 -70 327 190 0 0 chr6 113633278 113633336 -75646218 - L1MA6 LINE L1 -9 6291 6234 285 146 0 36 chr6 113633337 113633392 -75646162 + L1MA6 LINE L1 6216 6268 -32 624 72 24 0 chr6 113633596 113633679 -75645875 - AluSg/x SINE Alu -9 300 216 793 227 18 30 chr6 113633735 113635429 -75644125 + BSR/Beta Satellite Satellite 1 1673 0 1404 276 21 10 chr6 113635555 113636061 -75643493 + BSR/Beta Satellite Satellite 1 512 -49 562 268 4 29 chr6 113636084 113636754 -75642800 - BSR/Beta Satellite Satellite -7 653 1 3335 162 18 23 chr6 113636754 113637128 -75642426 - LTR43 LTR ERV1 0 602 228 1964 157 0 0 chr6 113637128 113637427 -75642127 - AluSx SINE Alu -13 299 1 3335 162 18 23 chr6 113637427 113637605 -75641949 - LTR43 LTR ERV1 -374 228 51 5426 157 25 19 chr6 113637605 113638568 -75640986 - LTR5 LTR ERVK 0 969 1 3335 162 18 23 chr6 113638568 113638619 -75640935 - LTR43 LTR ERV1 -551 51 1 3066 206 43 18 chr6 113638621 113639278 -75640276 - LTR43-int LTR ERV1 -1 4797 4125 273 196 0 0 chr6 113639274 113639325 -75640229 - LTR43-int LTR ERV1 -906 3892 3842 * 1552 298 19 17 chr6 113639914 113640541 -75639013 - LTR43-int LTR ERV1 -3842 956 516 42699 42 21 2 chr6 113640542 113646577 -75632977 + L1PA2 LINE L1 2 6155 0 183 139 0 0 chr6 113646583 113646619 -75632935 + (A)n Simple_repeat Simple_repeat 1 36 0 730 271 13 53 chr6 113646824 113647123 -75632431 - LTR43-int LTR ERV1 -4511 287 1 2299 152 118 5 chr6 113647123 113647556 -75631998 - LTR43 LTR ERV1 0 602 121 310 344 0 0 chr6 113649338 113649460 -75630094 - L1ME3A LINE L1 -232 5938 5817 3436 219 34 32 chr6 113649470 113650632 -75628922 - L1MB3 LINE L1 0 6183 4910 237 195 0 0 chr6 113650715 113650756 -75628798 + MLT1D LTR MaLR 359 399 -106 374 208 0 31 chr6 113651155 113651285 -75628269 + CT-rich Low_complexity Low_complexity 4 129 0 358 231 37 42 chr6 113651364 113651675 -75627879 + LSAU Satellite Satellite 141 498 0 210 235 15 15 chr6 113652426 113652494 -75627060 + (CCGGG)n Simple_repeat Simple_repeat 5 72 0 554 184 19 0 chr6 113652633 113652736 -75626818 + Tigger1 DNA MER2_type 406 510 -1908 7494 144 26 79 chr6 113652738 113653048 -75626506 + Tigger1 DNA MER2_type 1018 1343 -1075 2066 127 19 7 chr6 113653048 113653355 -75626199 + AluSq SINE Alu 1 311 -2 7494 144 26 79 chr6 113653355 113654524 -75625030 + Tigger1 DNA MER2_type 1343 2418 0 1472 179 6 53 chr6 113654528 113654698 -75624856 - AluJo SINE Alu -9 303 127 243 0 0 0 chr6 113654698 113654725 -75624829 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2226 92 0 3 chr6 113654725 113655009 -75624545 - AluY SINE Alu -28 283 1 1472 179 6 53 chr6 113655009 113655155 -75624399 - AluJo SINE Alu -183 129 1 2065 95 14 0 chr6 113655180 113655465 -75624089 + AluSg SINE Alu 1 289 -21 1481 206 30 7 chr6 113655489 113655790 -75623764 - L1MC1 LINE L1 -233 6100 5793 778 252 58 0 chr6 113655792 113656034 -75623520 + L1MC1 LINE L1 6077 6332 -1 25 65 0 0 chr6 113656192 113656238 -75623316 + AT_rich Low_complexity Low_complexity 1 46 0 24 53 0 0 chr6 113656453 113656491 -75623063 + AT_rich Low_complexity Low_complexity 1 38 0 332 152 61 18 chr6 113657323 113657487 -75622067 + (CA)n Simple_repeat Simple_repeat 1 171 0 372 167 48 31 chr6 113657505 113657805 -75621749 + (CA)n Simple_repeat Simple_repeat 1 305 0 281 141 40 50 chr6 113657811 113657910 -75621644 + (CACAC)n Simple_repeat Simple_repeat 5 102 0 312 133 52 35 chr6 113657933 113658106 -75621448 + (CA)n Simple_repeat Simple_repeat 2 177 0 406 96 32 70 chr6 113658137 113658324 -75621230 + (CA)n Simple_repeat Simple_repeat 1 180 0 316 153 45 34 chr6 113658353 113658530 -75621024 + (CA)n Simple_repeat Simple_repeat 2 180 0 761 134 3 1 chr6 113658878 113663345 -75616209 - CER Satellite Satellite 0 8471 3010 8449 54 0 0 chr6 113663345 113664314 -75615240 + LTR5 LTR ERVK 1 969 0 761 134 3 1 chr6 113664314 113667331 -75612223 - CER Satellite Satellite -5461 3010 1 7966 163 27 14 chr6 113667444 113668872 -75610682 - Ricksha DNA DNA -612 2634 1189 1724 164 6 2 chr6 113668874 113669201 -75610353 - Ricksha DNA DNA -2745 501 95 705 165 0 0 chr6 113669202 113669311 -75610243 + FLAM_C SINE Alu 3 111 -32 2535 114 11 19 chr6 113669312 113669690 -75609864 + THE1C LTR MaLR 1 375 0 7232 142 52 5 chr6 113669690 113670849 -75608705 + THE1C-int LTR MaLR 1 1213 -367 552 167 0 10 chr6 113670846 113670942 -75608612 + THE1C-int LTR MaLR 1486 1580 0 * 2176 131 58 17 chr6 113670942 113671302 -75608252 + THE1C LTR MaLR 1 375 0 524 178 0 0 chr6 113671323 113671413 -75608141 - Ricksha DNA DNA -1950 96 7 236 236 0 18 chr6 113671992 113672047 -75607507 - MER63 DNA MER1_type -104 732 679 360 291 15 66 chr6 113672134 113672402 -75607152 + L2 LINE L2 2753 3049 -264 270 269 0 0 chr6 113672402 113672469 -75607085 - MLT1E2 LTR MaLR 0 626 560 975 193 91 38 chr6 113672471 113672735 -75606819 - MLT1D LTR MaLR -158 347 70 501 296 22 50 chr6 113672774 113673051 -75606503 + L2 LINE L2 3045 3313 0 603 248 0 8 chr6 113673267 113673392 -75606162 - FLAM_C SINE Alu -18 125 2 252 86 0 0 chr6 113674617 113674652 -75604902 + (A)n Simple_repeat Simple_repeat 1 35 0 369 0 0 0 chr6 113675128 113675169 -75604385 + (TG)n Simple_repeat Simple_repeat 2 42 0 323 299 103 17 chr6 113676475 113676592 -75602962 + MARNA DNA Mariner 94 220 -366 362 285 145 11 chr6 113676622 113676801 -75602753 + MIR SINE MIR 4 206 -56 203 191 0 21 chr6 113677540 113677587 -75601967 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 236 345 20 20 chr6 113679513 113679661 -75599893 + L2 LINE L2 2694 2841 -473 1354 286 131 32 chr6 113680383 113680936 -75598618 + L2 LINE L2 2108 2779 -534 1842 107 4 4 chr6 113680936 113681188 -75598366 - AluSx SINE Alu -3 309 58 1354 286 131 32 chr6 113681188 113681436 -75598118 + L2 LINE L2 2779 3001 -312 226 48 0 48 chr6 113681440 113681482 -75598072 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 7598 30 0 0 chr6 113681482 113682581 -75596973 - L1PA4 LINE L1 -24 6131 5033 7386 40 0 0 chr6 113682580 113683485 -75596069 + L1P LINE L1 2265 3169 -2977 * 770 134 3 0 chr6 113683501 113691419 -75588135 - CER Satellite Satellite 0 7936 1 495 305 104 12 chr6 113791640 113791899 -75487655 + L1MC/D LINE L1 5525 5807 -2001 188 296 56 0 chr6 113793208 113793279 -75486275 + L3 LINE CR1 656 730 -847 690 279 17 0 chr6 113794200 113794379 -75485175 - MIR SINE MIR -2 260 79 2679 39 0 0 chr6 113794709 113795017 -75484537 + AluY SINE Alu 1 308 -3 277 280 51 51 chr6 113795217 113795335 -75484219 + MER117 DNA MER1_type 1 118 -79 25 31 0 0 chr6 113796072 113796104 -75483450 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 113796739 113796761 -75482793 + AT_rich Low_complexity Low_complexity 1 22 0 417 117 0 0 chr6 113796768 113796828 -75482726 - AluS SINE Alu -257 61 2 1360 120 0 0 chr6 113796829 113797021 -75482533 + AluSg/x SINE Alu 103 294 -16 5984 88 5 11 chr6 113797357 113798016 -75481538 - L1PA13 LINE L1 -19 6144 5482 228 35 0 0 chr6 113798016 113798045 -75481509 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5984 88 5 11 chr6 113798045 113798677 -75480877 - L1PA13 LINE L1 -681 5482 4848 4789 206 18 12 chr6 113798679 113799751 -75479803 - L1 LINE L1 -975 5171 4094 396 280 59 0 chr6 113799793 113799911 -75479643 + L2 LINE L2 3177 3301 -12 2395 68 0 3 chr6 113799936 113800230 -75479324 + AluY SINE Alu 4 296 -15 21 36 0 0 chr6 113800249 113800277 -75479277 + AT_rich Low_complexity Low_complexity 1 28 0 247 270 135 16 chr6 113800476 113800602 -75478952 + L3 LINE CR1 1297 1437 -140 712 257 59 36 chr6 113800619 113800872 -75478682 - MIR SINE MIR 0 262 4 446 236 154 36 chr6 113800892 113801087 -75478467 - MIR SINE MIR -21 241 24 210 288 30 0 chr6 113801090 113801156 -75478398 + L3 LINE CR1 1456 1523 -54 1726 163 14 0 chr6 113801186 113801462 -75478092 + AluJo SINE Alu 1 280 -32 370 256 144 30 chr6 113802288 113802489 -75477065 + MIR SINE MIR 5 220 -42 254 257 48 4 chr6 113802547 113802652 -75476902 + MIR SINE MIR 105 258 -4 22 0 0 0 chr6 113802652 113802674 -75476880 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chr6 113802716 113802756 -75476798 + (CA)n Simple_repeat Simple_repeat 1 40 0 23 54 0 0 chr6 113803265 113803302 -75476252 + AT_rich Low_complexity Low_complexity 1 37 0 392 303 135 50 chr6 113803376 113803646 -75475908 - L1M4 LINE L1 -2008 4138 3818 2060 126 64 14 chr6 113803646 113804003 -75475551 - THE1C LTR MaLR 0 375 1 392 303 135 50 chr6 113804003 113804154 -75475400 - L1M4 LINE L1 -2328 3818 3681 23 54 0 0 chr6 113804442 113804479 -75475075 + AT_rich Low_complexity Low_complexity 1 37 0 1608 213 147 5 chr6 113804896 113805305 -75474249 - MLT1E3 LTR MaLR -3 621 155 967 192 0 6 chr6 113805306 113805473 -75474081 - FRAM SINE Alu -17 159 1 712 219 8 0 chr6 113805505 113805633 -75473921 - MLT1E3 LTR MaLR -522 132 4 266 246 61 61 chr6 113805766 113805880 -75473674 + MLT1J1 LTR MaLR 224 337 -109 235 294 18 55 chr6 113805967 113806076 -75473478 + MLT1J LTR MaLR 301 405 -106 22 0 0 0 chr6 113806935 113806957 -75472597 + AT_rich Low_complexity Low_complexity 1 22 0 2111 106 3 0 chr6 113808335 113808663 -75470891 + AluSp SINE Alu 1 329 0 228 274 158 90 chr6 113808985 113809219 -75470335 - MLT1K LTR MaLR -159 429 180 201 306 59 35 chr6 113809398 113809483 -75470071 + L2 LINE L2 3186 3272 0 22 0 0 0 chr6 113811064 113811086 -75468468 + AT_rich Low_complexity Low_complexity 1 22 0 1801 202 11 6 chr6 113811583 113811930 -75467624 - MLT1A1 LTR MaLR -12 353 5 253 279 42 55 chr6 113811937 113812102 -75467452 + MER5C DNA MER1_type 60 222 -102 213 318 152 0 chr6 113812413 113812545 -75467009 + MIR SINE MIR 79 230 -32 1517 184 36 21 chr6 113812723 113813054 -75466500 - MER44D DNA MER2_type 0 609 4 205 280 80 0 chr6 113813057 113813132 -75466422 + MIR SINE MIR 175 255 -7 203 312 0 13 chr6 113813135 113813212 -75466342 + (CATA)n Simple_repeat Simple_repeat 3 78 0 2001 207 12 66 chr6 113814155 113814745 -75464809 - MER74A LTR ERVL 0 558 1 498 46 0 0 chr6 113815796 113815861 -75463693 + (TG)n Simple_repeat Simple_repeat 2 66 0 242 336 67 25 chr6 113817607 113817726 -75461828 + MIR SINE MIR 19 142 -66 794 252 96 0 chr6 113818124 113818342 -75461212 + MIR SINE MIR 13 251 -11 337 247 5 24 chr6 113819555 113819661 -75459893 - MIR SINE MIR -32 176 70 23 0 0 0 chr6 113821117 113821140 -75458414 + AT_rich Low_complexity Low_complexity 1 23 0 2043 116 0 11 chr6 113821602 113821914 -75457640 - AluSq SINE Alu 0 309 1 269 67 0 22 chr6 113822103 113822148 -75457406 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 332 315 127 6 chr6 113822341 113822522 -75457032 + MIR SINE MIR 32 234 -28 23 0 0 0 chr6 113822704 113822727 -75456827 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr6 113826571 113826596 -75452958 + (T)n Simple_repeat Simple_repeat 1 25 0 2156 126 11 53 chr6 113826633 113826991 -75452563 - MER61A LTR ERV1 0 343 1 1731 286 95 21 chr6 113829852 113830465 -75449089 + L1M2a LINE L1 1451 2108 -5060 261 344 61 46 chr6 113830644 113830775 -75448779 - L2 LINE L2 -15 3257 3125 837 225 81 10 chr6 113831131 113831340 -75448214 + MIR SINE MIR 10 233 -29 204 243 157 0 chr6 113831886 113831956 -75447598 + MIR SINE MIR 60 140 -122 192 77 0 0 chr6 113832348 113832374 -75447180 + (T)n Simple_repeat Simple_repeat 1 26 0 2002 141 7 3 chr6 113832588 113832893 -75446661 + AluSx SINE Alu 1 306 -6 27 29 0 0 chr6 113833111 113833145 -75446409 + AT_rich Low_complexity Low_complexity 1 34 0 226 118 59 0 chr6 113833423 113833474 -75446080 + CT-rich Low_complexity Low_complexity 3 56 0 22 35 0 0 chr6 113833816 113833845 -75445709 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr6 113833923 113833963 -75445591 + AT_rich Low_complexity Low_complexity 1 40 0 22 88 0 0 chr6 113834025 113834082 -75445472 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr6 113836695 113836717 -75442837 + AT_rich Low_complexity Low_complexity 1 22 0 204 97 0 0 chr6 113836745 113836776 -75442778 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 201 244 0 0 chr6 113836822 113836867 -75442687 + MIR3 SINE MIR 150 194 -14 1474 203 55 21 chr6 113837306 113837632 -75441922 + MER2 DNA MER2_type 9 345 0 3029 251 65 48 chr6 113837825 113838209 -75441345 - L1M4 LINE L1 -3776 2194 1818 1660 171 3 27 chr6 113838209 113838508 -75441046 - AluJo SINE Alu -20 292 1 3029 251 65 48 chr6 113838508 113840606 -75438948 - L1M4 LINE L1 -4152 1818 1 371 290 58 7 chr6 113840791 113840946 -75438608 + MER103 DNA DNA 3 165 -1 2345 95 0 10 chr6 113843169 113843474 -75436080 - AluSg1 SINE Alu -7 302 1 2114 189 22 88 chr6 113843498 113843713 -75435841 + L1MA9 LINE L1 5565 5793 -519 198 0 0 0 chr6 113843713 113843735 -75435819 + (TG)n Simple_repeat Simple_repeat 1 22 0 2114 189 22 88 chr6 113843735 113844118 -75435436 + L1MA9 LINE L1 5793 6123 -189 2530 68 3 0 chr6 113845216 113845526 -75434028 - AluY SINE Alu 0 311 1 264 385 83 56 chr6 113845589 113845999 -75433555 - L2 LINE L2 -7 3265 2845 431 321 68 21 chr6 113846284 113846474 -75433080 + MIR3 SINE MIR 5 203 -5 2133 108 0 23 chr6 113847536 113847843 -75431711 - AluSx SINE Alu -12 300 1 310 311 104 19 chr6 113847931 113848037 -75431517 + L2 LINE L2 3198 3312 -1 23 33 0 0 chr6 113848391 113848421 -75431133 + AT_rich Low_complexity Low_complexity 1 30 0 201 259 0 0 chr6 113849691 113849749 -75429805 + (TAAA)n Simple_repeat Simple_repeat 1 58 0 1858 180 41 36 chr6 113849828 113850240 -75429314 + MLT1C LTR MaLR 54 467 0 245 283 92 14 chr6 113850344 113850595 -75428959 + L1ME4a LINE L1 5191 5468 -745 398 234 16 102 chr6 113850608 113850736 -75428818 - MIR SINE MIR -28 234 118 236 266 21 43 chr6 113850851 113850945 -75428609 + L1ME4a LINE L1 5567 5658 -2150 * 249 231 148 37 chr6 113850936 113851044 -75428510 + L1ME4a LINE L1 5962 6081 -40 258 150 0 0 chr6 113851086 113851126 -75428428 - MER91B DNA MER1_type -127 63 24 186 333 40 20 chr6 113852317 113852467 -75427087 + L3b LINE CR1 1123 1275 -308 2140 89 3 3 chr6 113852506 113852820 -75426734 + AluSc SINE Alu 1 314 0 858 207 78 12 chr6 113852838 113853080 -75426474 - ORSL DNA AcHobo -16 259 2 431 282 44 53 chr6 113853268 113853474 -75426080 - MIR SINE MIR -39 223 20 27 0 0 0 chr6 113854457 113854484 -75425070 + AT_rich Low_complexity Low_complexity 1 27 0 355 380 35 0 chr6 113857866 113857979 -75421575 - L3 LINE CR1 -418 1159 1043 1133 322 95 49 chr6 113858037 113859294 -75420260 - L2 LINE L2 0 3272 1950 733 289 109 12 chr6 113859368 113859690 -75419864 - MLT1J2 LTR MaLR -30 420 68 184 354 0 15 chr6 113860369 113860434 -75419120 - L3 LINE CR1 -1114 463 400 359 299 26 12 chr6 113860538 113860682 -75418872 + MLT1I LTR MaLR 69 212 -197 777 273 102 9 chr6 113860907 113861123 -75418431 + MIR SINE MIR 27 262 0 323 344 73 0 chr6 113862771 113862922 -75416632 - MIR SINE MIR -11 251 90 226 352 31 39 chr6 113863187 113863315 -75416239 + MIR SINE MIR 26 152 -110 1269 129 0 0 chr6 113864201 113864379 -75415175 + AluSg/x SINE Alu 134 311 -1 2580 169 67 18 chr6 113864380 113864419 -75415135 - MLT2B2 LTR ERVL 0 515 479 777 11 0 0 chr6 113864419 113864509 -75415045 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 2580 169 67 18 chr6 113864509 113864960 -75414594 - MLT2B2 LTR ERVL -36 479 1 2401 170 40 2 chr6 113865090 113865537 -75414017 + L1PB4 LINE L1 5693 6156 0 1104 269 161 35 chr6 113865682 113866303 -75413251 + HAL1 LINE L1 10 708 -1799 987 280 147 33 chr6 113866303 113866760 -75412794 + MLT1J LTR MaLR 3 511 0 507 325 5 16 chr6 113866768 113866959 -75412595 + HAL1 LINE L1 712 900 -1607 337 238 71 8 chr6 113867009 113867135 -75412419 + HAL1 LINE L1 908 1041 -1466 2098 114 7 0 chr6 113867247 113867527 -75412027 + AluSq SINE Alu 3 284 -29 207 0 0 0 chr6 113867527 113867550 -75412004 + (TA)n Simple_repeat Simple_repeat 1 23 0 1723 289 51 10 chr6 113867559 113868283 -75411271 + HAL1 LINE L1 1060 1813 -694 1476 236 45 32 chr6 113868283 113868723 -75410831 - LTR16A1 LTR ERVL 0 457 12 1132 244 36 43 chr6 113868745 113869138 -75410416 + HAL1 LINE L1 1825 2214 -293 366 252 106 24 chr6 113870185 113870308 -75409246 - L2 LINE L2 -2 3311 3179 452 141 0 0 chr6 113872547 113872632 -75406922 + MER53 DNA DNA 93 177 -12 * 527 133 0 0 chr6 113872563 113872653 -75406901 - MER53 DNA DNA -98 91 2 415 323 76 0 chr6 113873699 113873857 -75405697 + MIR3 SINE MIR 1 170 -38 371 270 19 75 chr6 113873945 113874104 -75405450 + MIR SINE MIR 64 213 -49 2666 36 0 0 chr6 113874280 113874584 -75404970 - AluY SINE Alu -7 304 1 213 154 0 0 chr6 113875603 113875642 -75403912 + GA-rich Low_complexity Low_complexity 1 39 0 180 77 0 0 chr6 113876899 113876925 -75402629 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 192 239 30 75 chr6 113877094 113877161 -75402393 - L2 LINE L2 -8 3264 3201 858 226 131 9 chr6 113877228 113877449 -75402105 - MIR SINE MIR -2 260 13 27 0 0 0 chr6 113877512 113877539 -75402015 + AT_rich Low_complexity Low_complexity 1 27 0 1381 184 12 81 chr6 113878807 113879139 -75400415 - AluJo SINE Alu -3 309 1 472 224 84 14 chr6 113879441 113879584 -75399970 + MER103 DNA DNA 14 166 0 202 308 46 0 chr6 113882473 113882538 -75397016 - MIR SINE MIR -107 155 88 1129 60 13 0 chr6 113883364 113883514 -75396040 - L1PA4 LINE L1 -1 6154 6003 342 98 0 0 chr6 113885199 113885250 -75394304 + L1MA8 LINE L1 6078 6128 -163 387 0 0 0 chr6 113886542 113886585 -75392969 + (TA)n Simple_repeat Simple_repeat 1 43 0 934 135 28 11 chr6 113886663 113886841 -75392713 + L1MA8 LINE L1 6107 6287 -4 370 282 143 19 chr6 113887201 113887429 -75392125 + L2 LINE L2 2750 3001 -312 421 187 22 0 chr6 113889208 113889299 -75390255 - L1MD2 LINE L1 -11 6348 6256 1950 185 28 15 chr6 113889337 113889737 -75389817 - L1MC1 LINE L1 0 6333 5929 219 69 0 0 chr6 113890934 113890963 -75388591 + (CA)n Simple_repeat Simple_repeat 1 29 0 513 206 37 0 chr6 113890973 113891109 -75388445 + L1MA9 LINE L1 6151 6291 -21 346 271 107 90 chr6 113891449 113891814 -75387740 - L2 LINE L2 -4 3309 2939 261 119 0 0 chr6 113891890 113891932 -75387622 + (TCTCCC)n Simple_repeat Simple_repeat 5 46 0 357 62 0 0 chr6 113891933 113891981 -75387573 + (TG)n Simple_repeat Simple_repeat 2 49 0 261 326 71 32 chr6 113894355 113894540 -75385014 + MIR SINE MIR 23 206 -56 867 285 98 11 chr6 113894695 113895063 -75384491 + MLT1J LTR MaLR 75 474 -37 230 302 189 19 chr6 113895117 113895276 -75384278 + L2 LINE L2 3127 3312 -1 201 175 0 0 chr6 113895858 113895898 -75383656 + GA-rich Low_complexity Low_complexity 4 43 0 231 361 102 11 chr6 113895968 113896253 -75383301 + L2 LINE L2 1507 1817 -1497 1286 277 223 23 chr6 113896507 113897379 -75382175 + L2 LINE L2 2177 3232 -81 216 67 0 0 chr6 113897929 113897959 -75381595 + (TG)n Simple_repeat Simple_repeat 2 31 0 357 62 0 0 chr6 113899860 113899908 -75379646 + (CA)n Simple_repeat Simple_repeat 2 49 0 21 57 0 0 chr6 113899941 113899976 -75379578 + AT_rich Low_complexity Low_complexity 1 35 0 361 298 124 47 chr6 113900923 113901350 -75378204 - L2 LINE L2 0 3313 2771 2156 124 7 0 chr6 113902025 113902332 -75377222 - AluSc SINE Alu 0 309 1 180 0 0 0 chr6 113902615 113902635 -75376919 + (CAA)n Simple_repeat Simple_repeat 2 21 0 277 254 41 65 chr6 113903509 113903566 -75375988 - L1ME4a LINE L1 -22 6099 6042 2950 49 0 3 chr6 113903566 113903933 -75375621 + L1PA5 LINE L1 5789 6154 0 277 254 41 65 chr6 113903933 113904044 -75375510 - L1ME4a LINE L1 -79 6042 5935 306 308 67 8 chr6 113904069 113904189 -75375365 - L1MC4 LINE L1 -1339 6703 6577 42729 33 22 1 chr6 113904615 113910644 -75368910 + L1PA2 LINE L1 3 6155 0 270 274 55 0 chr6 113911341 113911414 -75368140 - L1ME4a LINE L1 -480 5641 5565 1770 182 0 3 chr6 113911785 113912082 -75367472 + AluJb SINE Alu 3 298 -14 1660 239 138 59 chr6 113912142 113912587 -75366967 + L1MC4 LINE L1 7090 7498 -544 2477 150 36 7 chr6 113912587 113913001 -75366553 - MSTB LTR MaLR 0 426 1 1660 239 138 59 chr6 113913001 113913436 -75366118 + L1MC4 LINE L1 7498 8040 -2 290 315 31 19 chr6 113913529 113913691 -75365863 + L2 LINE L2 2133 2296 -1018 234 143 271 0 chr6 113913658 113913728 -75365826 + L2 LINE L2 3225 3313 0 * 238 351 65 6 chr6 113913909 113914077 -75365477 - Charlie8 DNA MER1_type -2151 266 89 970 57 8 0 chr6 113914078 113914201 -75365353 - L1PA10 LINE L1 0 6168 6045 348 272 12 0 chr6 113914946 113915027 -75364527 - L2 LINE L2 -7 3306 3225 22 0 0 0 chr6 113915315 113915337 -75364217 + AT_rich Low_complexity Low_complexity 1 22 0 1505 268 77 15 chr6 113915884 113916365 -75363189 + MER97b DNA MER1_type? 1 511 -542 398 214 20 0 chr6 113916613 113916711 -75362843 + MER97b DNA MER1_type? 947 1046 -7 334 235 78 48 chr6 113917622 113917788 -75361766 - MER117 DNA MER1_type -26 171 1 379 216 198 36 chr6 113917803 113917914 -75361640 - MIR SINE MIR -64 144 16 217 296 21 92 chr6 113919996 113920138 -75359416 + L2 LINE L2 3141 3272 0 228 121 0 0 chr6 113920899 113920932 -75358622 + MIR SINE MIR 107 139 -69 271 313 0 0 chr6 113921201 113921268 -75358286 - L2 LINE L2 -12 3301 3235 336 315 37 62 chr6 113921312 113921553 -75358001 - L2 LINE L2 -199 3073 2839 225 83 0 0 chr6 113921933 113921969 -75357585 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 429 91 0 0 chr6 113921979 113922034 -75357520 - Alu SINE Alu -20 292 238 4338 135 11 1 chr6 113922034 113922728 -75356826 + L1PA16 LINE L1 5466 6166 0 513 292 54 37 chr6 113922871 113923073 -75356481 + MIR SINE MIR 6 210 -52 2361 108 0 0 chr6 113923151 113923458 -75356096 + AluSx SINE Alu 1 307 -5 29 47 0 0 chr6 113926078 113926121 -75353433 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr6 113926759 113926789 -75352765 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr6 113927053 113927091 -75352463 + AT_rich Low_complexity Low_complexity 1 38 0 279 309 150 37 chr6 113929030 113929431 -75350123 + L2 LINE L2 2435 2880 -434 183 294 0 20 chr6 113929717 113929768 -75349786 + MIR SINE MIR 211 260 -2 6369 63 2 0 chr6 113930305 113931109 -75348445 - L1PA8 LINE L1 -8 6164 5359 377 42 0 0 chr6 113931109 113931157 -75348397 + L1PA8 LINE L1 5307 5354 -792 * 506 266 38 52 chr6 113931146 113931468 -75348086 + L1ME3A LINE L1 5630 5949 -217 288 139 0 0 chr6 113931484 113931527 -75348027 - MLT2B1 LTR ERVL -2 513 471 7538 133 15 11 chr6 113931529 113932242 -75347312 + Tigger3b DNA MER2_type 3 725 -2303 2691 80 3 3 chr6 113932242 113932606 -75346948 + L1PA7 LINE L1 5790 6153 -1 7538 133 15 11 chr6 113932606 113933116 -75346438 + Tigger3b DNA MER2_type 725 1231 0 1656 197 37 42 chr6 113933205 113933611 -75345943 - MLT2B1 LTR ERVL -66 449 3 214 250 58 0 chr6 113934291 113934343 -75345211 + L2 LINE L2 3254 3308 -5 3555 136 88 10 chr6 113934803 113935473 -75344081 - L1MB3 LINE L1 -10 6173 5452 544 37 12 61 chr6 113937703 113937785 -75341769 + MADE1 DNA Mariner 1 78 -2 282 56 0 0 chr6 113937845 113937881 -75341673 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr6 113939853 113939874 -75339680 + AT_rich Low_complexity Low_complexity 1 21 0 868 251 41 29 chr6 113940311 113940560 -75338994 + MIR SINE MIR 14 259 -3 186 279 49 0 chr6 113941276 113941337 -75338217 + L3b LINE CR1 1426 1489 -94 525 300 18 68 chr6 113943569 113943789 -75335765 - MIR SINE MIR 0 262 54 27 49 0 0 chr6 113944552 113944593 -75334961 + AT_rich Low_complexity Low_complexity 1 41 0 593 307 44 40 chr6 113945125 113945353 -75334201 + MIR SINE MIR 34 262 0 201 39 0 0 chr6 113947200 113947226 -75332328 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2355 104 0 0 chr6 113947346 113947653 -75331901 - AluSq SINE Alu -6 307 1 4065 218 77 26 chr6 113947699 113949291 -75330263 + L1MD3 LINE L1 4199 5563 -603 404 297 52 65 chr6 113949379 113949689 -75329865 - MLT1I LTR MaLR -29 380 75 262 309 154 35 chr6 113950410 113950611 -75328943 - MIR SINE MIR -3 259 35 275 327 66 14 chr6 113950812 113950968 -75328586 - MIR SINE MIR -68 140 6 279 0 0 0 chr6 113951794 113951825 -75327729 + (CA)n Simple_repeat Simple_repeat 2 32 0 243 0 0 0 chr6 113951825 113951852 -75327702 + (A)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr6 113952178 113952207 -75327347 + AT_rich Low_complexity Low_complexity 1 29 0 254 349 47 0 chr6 113952388 113952474 -75327080 + MIR SINE MIR 62 151 -111 22 35 0 0 chr6 113954737 113954766 -75324788 + AT_rich Low_complexity Low_complexity 1 29 0 34 0 0 0 chr6 113956318 113956352 -75323202 + AT_rich Low_complexity Low_complexity 1 34 0 483 18 0 0 chr6 113956750 113956806 -75322748 + (TA)n Simple_repeat Simple_repeat 2 57 0 2276 97 0 0 chr6 113956806 113957095 -75322459 - AluSg SINE Alu -11 299 11 1335 208 80 10 chr6 113957326 113957500 -75322054 - AluJo SINE Alu -4 308 105 180 0 0 0 chr6 113957500 113957520 -75322034 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1335 208 80 10 chr6 113957520 113957633 -75321921 - AluJo SINE Alu -207 105 1 21 0 0 0 chr6 113957659 113957680 -75321874 + AT_rich Low_complexity Low_complexity 1 21 0 374 296 15 22 chr6 113957928 113958063 -75321491 + MER20B DNA MER1_type 43 176 -607 372 268 63 24 chr6 113958164 113958291 -75321263 - L2 LINE L2 0 3272 3141 652 315 159 20 chr6 113958473 113959152 -75320402 - L2 LINE L2 0 3313 2550 562 256 191 24 chr6 113959170 113959463 -75320091 - L2 LINE L2 -941 2373 2032 391 300 194 54 chr6 113959521 113959737 -75319817 - L2 LINE L2 -354 2960 2776 2450 127 40 33 chr6 113959737 113960162 -75319392 + MSTA LTR MaLR 1 428 0 391 300 194 54 chr6 113960162 113960836 -75318718 - L2 LINE L2 -538 2776 1945 3065 222 68 6 chr6 113961193 113961976 -75317578 - MER97a DNA MER1_type? -59 835 5 22 0 0 0 chr6 114012530 114012552 -75267002 + AT_rich Low_complexity Low_complexity 1 22 0 502 227 144 48 chr6 114013216 114013507 -75266047 - L1ME LINE L1 -559 5603 5285 278 296 53 45 chr6 114013590 114013833 -75265721 - L1ME LINE L1 -905 5241 4997 673 206 122 0 chr6 114014921 114015052 -75264502 + FRAM SINE Alu 1 146 -30 666 0 0 0 chr6 114015055 114015129 -75264425 + (TAAAA)n Simple_repeat Simple_repeat 1 74 0 211 265 52 59 chr6 114016374 114016510 -75263044 - L3 LINE CR1 -32 1545 1411 209 260 68 14 chr6 114016583 114016656 -75262898 - L3 LINE CR1 -199 1378 1302 1843 130 47 0 chr6 114017417 114017693 -75261861 - AluSx SINE Alu -23 289 1 2191 110 0 0 chr6 114018546 114018836 -75260718 - AluSx SINE Alu -22 290 1 238 313 112 75 chr6 114019526 114019660 -75259894 + L2 LINE L2 3134 3272 0 1337 252 100 2 chr6 114020345 114020806 -75258748 - MLT1E LTR MaLR 0 593 1 640 326 16 101 chr6 114023116 114023493 -75256061 - L2 LINE L2 0 3272 2928 3502 122 23 73 chr6 114023541 114024271 -75255283 - L1MA4 LINE L1 -6 6294 5601 983 137 23 17 chr6 114024271 114024437 -75255117 - L1PA16 LINE L1 0 6166 5991 334 234 117 9 chr6 114026033 114026144 -75253410 + MER103 DNA DNA 35 157 -9 347 297 144 4 chr6 114027253 114027509 -75252045 - L1ME4a LINE L1 -5 6116 5825 233 192 39 26 chr6 114027687 114027765 -75251789 + L2 LINE L2 2921 2999 -314 269 326 139 28 chr6 114027770 114027914 -75251640 + L2 LINE L2 3108 3267 -5 287 250 52 81 chr6 114027931 114028103 -75251451 - L1ME4a LINE L1 -377 5744 5578 303 292 143 13 chr6 114028227 114028381 -75251173 - L1ME4a LINE L1 -718 5444 5271 29 0 0 0 chr6 114028451 114028480 -75251074 + AT_rich Low_complexity Low_complexity 1 29 0 5401 106 45 0 chr6 114028531 114029358 -75250196 + L1PB2 LINE L1 5288 6151 0 316 307 31 31 chr6 114029390 114029553 -75250001 - L1ME4a LINE L1 -1049 5097 4935 545 293 100 23 chr6 114029814 114030462 -75249092 + L1ME2 LINE L1 5149 5859 -295 356 335 64 23 chr6 114030901 114031119 -75248435 - L1ME4a LINE L1 -3339 2807 2581 328 208 107 81 chr6 114031290 114031439 -75248115 - L1ME4a LINE L1 -3775 2371 2219 2131 117 0 0 chr6 114031465 114031771 -75247783 + AluSx SINE Alu 1 306 0 1283 260 67 42 chr6 114031776 114032497 -75247057 + MER21B LTR ERV1 17 809 -54 186 43 0 0 chr6 114033521 114033544 -75246010 + (CA)n Simple_repeat Simple_repeat 2 24 0 1244 179 0 22 chr6 114033717 114033940 -75245614 - AluJb SINE Alu -76 236 19 8388 198 17 12 chr6 114033949 114034476 -75245078 - L1PA15-16 LINE L1 -2367 4482 3959 207 0 0 0 chr6 114034476 114034499 -75245055 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8388 198 17 12 chr6 114034499 114036762 -75242792 - L1PA15-16 LINE L1 -2890 3959 1670 247 335 110 41 chr6 114037884 114038203 -75241351 + L2 LINE L2 675 1015 -2299 351 0 0 0 chr6 114038317 114038356 -75241198 + (CA)n Simple_repeat Simple_repeat 1 39 0 234 366 9 0 chr6 114038865 114038977 -75240577 - L2 LINE L2 -2 3311 3199 379 317 194 31 chr6 114039027 114039548 -75240006 + L2 LINE L2 1738 2343 -971 1098 295 153 18 chr6 114040397 114041542 -75238012 + L1MEc LINE L1 1012 2310 -4086 475 123 14 0 chr6 114041683 114041756 -75237798 + MADE1 DNA Mariner 7 80 0 202 246 0 16 chr6 114041763 114041824 -75237730 + (TA)n Simple_repeat Simple_repeat 2 61 0 1070 145 13 97 chr6 114041880 114042108 -75237446 - MER2 DNA MER2_type -135 210 2 204 335 53 113 chr6 114042113 114042379 -75237175 + L2 LINE L2 3004 3253 -19 22 0 0 0 chr6 114042515 114042537 -75237017 + AT_rich Low_complexity Low_complexity 1 22 0 882 250 24 9 chr6 114042643 114042855 -75236699 + MIR SINE MIR 11 225 -37 1071 138 0 0 chr6 114043832 114044045 -75235509 + (TA)n Simple_repeat Simple_repeat 1 213 0 26 0 0 0 chr6 114044186 114044212 -75235342 + AT_rich Low_complexity Low_complexity 1 26 0 32 57 0 0 chr6 114046087 114046140 -75233414 + AT_rich Low_complexity Low_complexity 1 53 0 195 282 183 0 chr6 114049025 114049096 -75230458 - L2 LINE L2 -3 3269 3186 2931 226 34 15 chr6 114051425 114052163 -75227391 + L1ME1 LINE L1 5427 6334 0 498 266 111 80 chr6 114052241 114052628 -75226926 + L1ME4a LINE L1 5529 5927 -194 1398 249 94 23 chr6 114053015 114053493 -75226061 - MLT1E3 LTR MaLR 0 624 113 21 0 0 0 chr6 114053498 114053519 -75226035 + AT_rich Low_complexity Low_complexity 1 21 0 852 185 196 0 chr6 114053524 114053713 -75225841 - MLT1E1 LTR MaLR -426 228 3 359 41 20 0 chr6 114053841 114053890 -75225664 + (CA)n Simple_repeat Simple_repeat 2 51 0 623 263 32 0 chr6 114054066 114054222 -75225332 - MER117 DNA MER1_type -36 161 1 182 339 165 9 chr6 114054559 114054668 -75224886 - MIR SINE MIR -56 206 81 252 0 0 0 chr6 114057217 114057245 -75222309 + (TC)n Simple_repeat Simple_repeat 1 28 0 215 31 31 0 chr6 114057244 114057276 -75222278 + (CA)n Simple_repeat Simple_repeat 1 33 0 * 325 281 0 70 chr6 114058170 114058284 -75221270 - L2 LINE L2 -1 3312 3207 1272 199 17 0 chr6 114058378 114058674 -75220880 - L1MA4 LINE L1 0 6300 6000 2223 214 112 75 chr6 114062117 114062822 -75216732 + MER21B LTR ERV1 1 731 -132 2606 164 42 46 chr6 114063048 114063573 -75215981 - LTR26B LTR ERV1 -7 524 2 2081 90 0 7 chr6 114063963 114064263 -75215291 - L1PA13 LINE L1 0 6163 5866 2057 113 0 55 chr6 114065379 114065708 -75213846 - AluY SINE Alu 0 311 1 42423 34 22 2 chr6 114065746 114071773 -75207781 + L1PA2 LINE L1 1 6154 -1 670 253 11 21 chr6 114071798 114071988 -75207566 - MIR SINE MIR -24 238 51 453 305 8 0 chr6 114074940 114075058 -75204496 + MIR SINE MIR 8 126 -136 806 294 117 29 chr6 114075166 114075551 -75204003 - MLT1J2 LTR MaLR -13 437 19 206 340 124 0 chr6 114075706 114075803 -75203751 + MIR SINE MIR 151 259 -3 223 260 0 0 chr6 114076691 114076741 -75202813 - MIR SINE MIR 0 262 213 2276 124 16 11 chr6 114076896 114077268 -75202286 + THE1C LTR MaLR 1 374 -1 184 295 115 0 chr6 114077455 114077533 -75202021 + MIR SINE MIR 19 105 -157 2177 128 3 0 chr6 114077566 114077871 -75201683 - AluSx SINE Alu -6 306 1 1805 216 82 55 chr6 114077992 114078539 -75201015 + MLT1E3 LTR MaLR 7 568 -56 1426 196 4 11 chr6 114078541 114078811 -75200743 + AluJb SINE Alu 1 268 -44 344 203 0 0 chr6 114078830 114078904 -75200650 + MLT1E3 LTR MaLR 581 654 0 1764 164 66 17 chr6 114079034 114079382 -75200172 + MLT1A1 LTR MaLR 1 365 0 7754 17 6 0 chr6 114079423 114080343 -75199211 - L1PA3 LINE L1 0 6155 5233 193 44 0 89 chr6 114080702 114080747 -75198807 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 311 237 133 17 chr6 114080759 114080932 -75198622 + L1ME4a LINE L1 5928 6120 -1 190 350 126 19 chr6 114081098 114081201 -75198353 + MIR SINE MIR 37 150 -58 277 137 0 0 chr6 114081599 114081650 -75197904 - L1PB4 LINE L1 -7 6149 6099 467 260 14 142 chr6 114082352 114082640 -75196914 + MIR SINE MIR 12 262 0 295 244 0 63 chr6 114084248 114084328 -75195226 + MIR SINE MIR 74 147 -62 280 304 71 65 chr6 114085407 114085575 -75193979 - MIR SINE MIR 0 262 94 23 68 0 0 chr6 114086404 114086448 -75193106 + AT_rich Low_complexity Low_complexity 1 44 0 184 154 138 62 chr6 114086550 114086615 -75192939 - L3 LINE CR1 -558 1019 950 21 0 0 0 chr6 114086790 114086811 -75192743 + AT_rich Low_complexity Low_complexity 1 21 0 650 24 0 0 chr6 114087884 114087966 -75191588 + L1PA2 LINE L1 6074 6155 0 368 310 152 6 chr6 114088007 114088178 -75191376 - MIR SINE MIR -36 226 31 204 328 82 33 chr6 114088197 114088319 -75191235 - L2 LINE L2 -24 3289 3162 334 340 110 0 chr6 114088329 114088529 -75191025 + L1MC4 LINE L1 3718 3939 -2207 415 281 94 53 chr6 114088553 114088852 -75190702 + L1MC4 LINE L1 4171 4481 -1665 671 295 132 12 chr6 114088863 114089205 -75190349 + L1MC4 LINE L1 5523 5905 -1903 23 0 0 0 chr6 114089255 114089278 -75190276 + AT_rich Low_complexity Low_complexity 1 23 0 208 368 65 22 chr6 114089396 114089581 -75189973 - L2 LINE L2 -255 3017 2825 229 303 63 35 chr6 114090296 114090438 -75189116 - L2 LINE L2 -2 3311 3166 472 305 150 5 chr6 114090791 114090978 -75188576 - MIR SINE MIR -2 260 47 1454 161 158 0 chr6 114091131 114091391 -75188163 + AluJb SINE Alu 2 302 0 249 163 146 81 chr6 114092274 114092397 -75187157 + L1MC5 LINE L1 7630 7760 -201 21 0 0 0 chr6 114092619 114092640 -75186914 + AT_rich Low_complexity Low_complexity 1 21 0 237 255 43 21 chr6 114094173 114094267 -75185287 + L1MC4 LINE L1 6608 6703 -1339 26 50 0 0 chr6 114094410 114094450 -75185104 + AT_rich Low_complexity Low_complexity 1 40 0 468 282 97 28 chr6 114094476 114094692 -75184862 + MIR SINE MIR 32 262 0 193 254 63 32 chr6 114094785 114094848 -75184706 + L2 LINE L2 3245 3309 -4 315 104 0 0 chr6 114095513 114095561 -75183993 + (TG)n Simple_repeat Simple_repeat 2 49 0 369 0 0 0 chr6 114096343 114096384 -75183170 + (TG)n Simple_repeat Simple_repeat 2 42 0 1096 229 4 17 chr6 114098852 114099092 -75180462 + MER8 DNA MER2_type 3 239 0 254 336 72 24 chr6 114099726 114099851 -75179703 - MIR3 SINE MIR -69 139 9 2303 89 0 3 chr6 114102564 114102856 -75176698 + AluSq SINE Alu 1 291 -22 326 267 87 27 chr6 114103638 114103788 -75175766 + MER20 DNA MER1_type 61 219 0 559 332 21 0 chr6 114104828 114105020 -75174534 - MIR SINE MIR -33 229 35 1685 182 14 3 chr6 114105087 114105378 -75174176 - AluJo SINE Alu -18 294 1 266 239 0 28 chr6 114105892 114105963 -75173591 - MIR SINE MIR -12 250 182 195 258 0 65 chr6 114107572 114107634 -75171920 + MIR3 SINE MIR 138 195 -13 2356 189 61 6 chr6 114108057 114108889 -75170665 + L1MD1 LINE L1 4839 5709 -533 4703 165 34 3 chr6 114108930 114109607 -75169947 - L1MB3 LINE L1 -1 6182 5471 276 30 0 0 chr6 114109607 114109640 -75169914 + (TG)n Simple_repeat Simple_repeat 2 34 0 4703 165 34 3 chr6 114109640 114109834 -75169720 - L1MB3 LINE L1 -712 5471 5284 2507 178 57 0 chr6 114109838 114110326 -75169228 + L1MD1 LINE L1 5706 6221 -21 299 291 84 47 chr6 114110449 114111187 -75168367 + L1M4 LINE L1 2147 2911 -3235 3397 227 48 48 chr6 114111257 114112393 -75167161 + L1MC4 LINE L1 6905 8040 -2 401 273 134 23 chr6 114112610 114112782 -75166772 + MIR SINE MIR 26 216 -46 2729 19 3 0 chr6 114113241 114113549 -75166005 - AluY SINE Alu -2 309 1 233 291 248 8 chr6 114114127 114114244 -75165310 - L2 LINE L2 -3 3269 3125 299 335 165 5 chr6 114114432 114114656 -75164898 - MIR SINE MIR 0 262 3 2546 156 74 4 chr6 114117354 114117868 -75161686 - L1MA9 LINE L1 -4 6308 5759 3234 161 52 58 chr6 114117873 114119156 -75160398 - L1MA9 LINE L1 -379 5933 4623 4912 192 27 94 chr6 114119158 114120673 -75158881 - L1MA9 LINE L1 -2059 4087 2674 21 0 0 0 chr6 114122265 114122286 -75157268 + AT_rich Low_complexity Low_complexity 1 21 0 373 349 147 26 chr6 114122286 114122701 -75156853 - L2 LINE L2 0 3272 2808 2104 134 0 6 chr6 114122928 114123209 -75156345 + AluSx SINE Alu 1 97 -215 198 0 0 0 chr6 114123209 114123231 -75156323 + (GAAA)n Simple_repeat Simple_repeat 3 24 0 2104 134 0 6 chr6 114123231 114123446 -75156108 + AluSx SINE Alu 97 312 0 228 149 0 0 chr6 114123450 114123497 -75156057 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 4862 58 25 0 chr6 114126369 114126935 -75152619 + LTR19B LTR ERV1 1 580 0 21 36 0 0 chr6 114127280 114127308 -75152246 + AT_rich Low_complexity Low_complexity 1 28 0 1323 166 4 61 chr6 114128765 114129085 -75150469 + AluJo SINE Alu 34 312 0 2152 124 7 0 chr6 114129559 114129857 -75149697 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr6 114130239 114130260 -75149294 + AT_rich Low_complexity Low_complexity 1 21 0 2236 117 10 0 chr6 114130305 114130614 -75148940 - AluSx SINE Alu 0 312 1 460 293 0 43 chr6 114132162 114132326 -75147228 - L2 LINE L2 -1 3312 3156 2028 130 7 7 chr6 114132884 114133176 -75146378 - AluSx SINE Alu -20 292 1 852 146 79 6 chr6 114133319 114133361 -75146193 + L1MA8 LINE L1 6110 6148 -143 195 42 0 0 chr6 114133361 114133385 -75146169 + (CA)n Simple_repeat Simple_repeat 1 24 0 852 146 79 6 chr6 114133385 114133507 -75146047 + L1MA8 LINE L1 6148 6286 -5 411 264 19 9 chr6 114134019 114134125 -75145429 - L2 LINE L2 -4 3309 3203 1674 166 0 18 chr6 114135099 114135404 -75144150 - AluJb SINE Alu 0 310 11 281 263 12 0 chr6 114135416 114135496 -75144058 + MIR SINE MIR 169 249 -13 2959 76 3 0 chr6 114135633 114135987 -75143567 + THE1A LTR MaLR 1 355 0 487 276 123 91 chr6 114139009 114139329 -75140225 + L1ME LINE L1 5272 5580 -541 1524 169 19 89 chr6 114139329 114139690 -75139864 - MER44D DNA MER2_type 0 609 4 487 276 123 91 chr6 114139690 114139760 -75139794 + L1ME LINE L1 5580 5646 -475 2168 118 3 3 chr6 114139760 114140057 -75139497 + AluSx SINE Alu 1 297 -15 487 276 123 91 chr6 114140057 114140201 -75139353 + L1ME LINE L1 5646 5824 -297 21 104 0 0 chr6 114141152 114141229 -75138325 + AT_rich Low_complexity Low_complexity 1 77 0 1508 166 0 16 chr6 114142579 114142826 -75136728 + AluJo SINE Alu 45 287 -25 894 220 28 6 chr6 114142901 114143083 -75136471 - MER5A DNA MER1_type 0 189 4 1870 260 168 12 chr6 114143258 114144222 -75135332 + L2 LINE L2 2048 3175 -138 836 162 7 20 chr6 114144255 114144403 -75135151 + AluJb SINE Alu 131 276 -36 237 33 0 0 chr6 114144410 114144440 -75135114 + (CA)n Simple_repeat Simple_repeat 1 30 0 449 234 90 0 chr6 114144476 114144587 -75134967 + L2 LINE L2 3193 3313 0 427 190 13 0 chr6 114145933 114146012 -75133542 + MER116 DNA Mariner 1 80 0 341 238 30 30 chr6 114146050 114146151 -75133403 + MIR SINE MIR 21 121 -141 239 53 0 26 chr6 114146659 114146697 -75132857 + (CA)n Simple_repeat Simple_repeat 1 37 0 300 321 0 0 chr6 114146953 114147034 -75132520 + L2 LINE L2 3226 3306 -7 341 291 31 8 chr6 114147237 114147364 -75132190 - MIR SINE MIR -2 260 131 2147 112 6 16 chr6 114147397 114147709 -75131845 - AluSc SINE Alu 0 309 1 367 314 14 36 chr6 114147709 114147849 -75131705 - MIR SINE MIR -120 142 6 6285 132 9 3 chr6 114148602 114149791 -75129763 + L1PB2 LINE L1 4955 6151 0 201 313 0 0 chr6 114150450 114150517 -75129037 + MIR SINE MIR 187 253 -9 723 303 17 8 chr6 114150785 114151026 -75128528 - MIR SINE MIR 0 262 20 322 240 23 131 chr6 114154411 114154632 -75124922 + L1MC4 LINE L1 7842 8038 -4 210 37 0 0 chr6 114155117 114155144 -75124410 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr6 114157360 114157388 -75122166 + GC_rich Low_complexity Low_complexity 1 28 0 214 325 184 0 chr6 114160471 114160585 -75118969 + MIR SINE MIR 23 157 -105 204 179 0 0 chr6 114160585 114160624 -75118930 + (TAA)n Simple_repeat Simple_repeat 3 41 0 288 0 0 0 chr6 114161339 114161371 -75118183 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 324 0 0 0 chr6 114161370 114161406 -75118148 + (CA)n Simple_repeat Simple_repeat 1 36 0 366 295 78 78 chr6 114161752 114162047 -75117507 - L2 LINE L2 -79 3193 2899 290 321 149 52 chr6 114162161 114162839 -75116715 - L2 LINE L2 -571 2743 2000 604 224 112 42 chr6 114162851 114163065 -75116489 + L2 LINE L2 3000 3228 -85 185 0 40 0 chr6 114164329 114164354 -75115200 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 25 31 0 0 chr6 114167884 114167916 -75111638 + AT_rich Low_complexity Low_complexity 1 32 0 657 25 0 0 chr6 114168666 114168745 -75110809 + (TC)n Simple_repeat Simple_repeat 2 80 0 198 0 0 0 chr6 114171473 114171495 -75108059 + (TTG)n Simple_repeat Simple_repeat 2 23 0 312 137 0 0 chr6 114172483 114172534 -75107020 + (T)n Simple_repeat Simple_repeat 1 51 0 22 35 0 0 chr6 114179295 114179324 -75100230 + AT_rich Low_complexity Low_complexity 1 29 0 210 71 0 0 chr6 114179409 114179437 -75100117 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chr6 114179628 114179653 -75099901 + AT_rich Low_complexity Low_complexity 1 25 0 1084 173 32 22 chr6 114180422 114180607 -75098947 - MER5A DNA MER1_type -2 187 1 841 183 53 88 chr6 114181201 114181486 -75098068 + ORSL DNA AcHobo 1 275 0 1570 254 117 27 chr6 114181901 114182424 -75097130 - L1MC4a LINE L1 -1898 5910 5341 375 238 48 12 chr6 114184317 114184401 -75095153 + MER91A DNA MER1_type 109 195 -1 227 293 20 40 chr6 114185126 114185225 -75094329 - MIR SINE MIR -81 181 85 2577 57 0 0 chr6 114185399 114185699 -75093855 - AluY SINE Alu -7 304 5 3684 192 29 51 chr6 114185707 114186597 -75092957 - L1MD2 LINE L1 -14 6345 5475 1397 168 0 4 chr6 114186630 114186856 -75092698 - AluJb SINE Alu -87 225 1 964 185 66 36 chr6 114186856 114187215 -75092339 - L1MD2 LINE L1 -746 5400 5123 1553 244 98 19 chr6 114187371 114188110 -75091444 - L2 LINE L2 -73 3240 2448 1756 164 0 25 chr6 114188127 114188433 -75091121 + AluJo SINE Alu 3 301 0 729 277 68 35 chr6 114188511 114188850 -75090704 + L1MC4a LINE L1 5554 5903 -1905 2228 99 34 0 chr6 114189092 114189385 -75090169 + AluSp SINE Alu 2 304 -9 776 197 22 22 chr6 114189413 114189550 -75090004 - FRAM SINE Alu -39 137 1 250 315 22 0 chr6 114190803 114190892 -75088662 + MIR3 SINE MIR 114 204 -4 396 328 138 0 chr6 114190913 114191102 -75088452 - MIR SINE MIR 0 262 48 313 284 12 0 chr6 114191142 114191223 -75088331 - MARNA DNA Mariner -66 520 439 1584 188 31 10 chr6 114191272 114191560 -75087994 - AluJo SINE Alu -18 294 1 439 243 7 79 chr6 114192423 114192563 -75086991 + MIR SINE MIR 15 144 -118 705 310 114 27 chr6 114192627 114193075 -75086479 + LTR33 LTR ERVL 23 509 -12 1779 180 3 3 chr6 114194058 114194353 -75085201 - AluJo SINE Alu -17 295 1 28 29 0 0 chr6 114196251 114196286 -75083268 + AT_rich Low_complexity Low_complexity 1 35 0 536 292 186 11 chr6 114197396 114197784 -75081770 + MARNA DNA Mariner 99 575 -11 1571 208 52 81 chr6 114200662 114200810 -75078744 - MLT1C LTR MaLR 0 467 316 3902 124 6 2 chr6 114200810 114201335 -75078219 + MER1A DNA MER1_type 1 527 0 1571 208 52 81 chr6 114201335 114201667 -75077887 - MLT1C LTR MaLR -151 316 1 2160 118 0 3 chr6 114201696 114201992 -75077562 - AluSg SINE Alu -15 295 1 303 275 159 22 chr6 114204551 114204733 -75074821 + L1ME2 LINE L1 5691 5897 -267 752 183 74 143 chr6 114204748 114205234 -75074320 - MLT1F1 LTR MaLR -2 565 1 2128 122 33 79 chr6 114206098 114206491 -75073063 - THE1C LTR MaLR 0 375 1 4480 165 73 23 chr6 114206576 114207627 -75071927 - L1MB3 LINE L1 -16 6167 5072 7663 43 28 1 chr6 114207783 114208410 -75071144 - L1PA7 LINE L1 -3 6151 5543 2353 97 0 3 chr6 114208410 114208708 -75070846 + AluY SINE Alu 1 297 -14 7663 43 28 1 chr6 114208708 114209746 -75069808 - L1PA7 LINE L1 -611 5543 4464 9670 106 4 6 chr6 114209746 114211109 -75068445 + L1P LINE L1 1479 2838 -3308 301 143 20 0 chr6 114212801 114212850 -75066704 - L2 LINE L2 -4 3268 3219 1025 167 11 21 chr6 114213062 114213248 -75066306 + AluJb SINE Alu 129 312 0 895 242 172 50 chr6 114215670 114216394 -75063160 - L2 LINE L2 0 3313 2423 2438 31 42 0 chr6 114220292 114220581 -75058973 + AluY SINE Alu 1 301 -10 254 219 16 0 chr6 114221725 114221789 -75057765 + (TTA)n Simple_repeat Simple_repeat 2 66 0 1759 138 84 4 chr6 114221832 114222107 -75057447 + AluSq SINE Alu 2 298 -15 1637 150 77 7 chr6 114222123 114222396 -75057158 + AluSx SINE Alu 1 292 -20 270 300 43 0 chr6 114222841 114222911 -75056643 - MIR SINE MIR -72 136 64 493 285 21 38 chr6 114222968 114223154 -75056400 - MER5A DNA MER1_type 0 189 7 996 207 9 5 chr6 114223677 114223894 -75055660 - L1MD2 LINE L1 -7 6352 6135 189 74 0 0 chr6 114225283 114225310 -75054244 + (TA)n Simple_repeat Simple_repeat 1 27 0 306 270 20 17 chr6 114226606 114226783 -75052771 - MIR SINE MIR -12 250 21 23 54 0 0 chr6 114227354 114227391 -75052163 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 114228600 114228621 -75050933 + AT_rich Low_complexity Low_complexity 1 21 0 250 220 34 0 chr6 114230037 114230096 -75049458 + (TATG)n Simple_repeat Simple_repeat 2 62 0 231 356 150 17 chr6 114230744 114230924 -75048630 + L2 LINE L2 2554 2757 -557 186 133 0 0 chr6 114231089 114231119 -75048435 + (TTC)n Simple_repeat Simple_repeat 2 31 0 1515 155 120 28 chr6 114231237 114231554 -75048000 + MER7A DNA MER2_type 1 344 -2 21 0 0 0 chr6 114231710 114231731 -75047823 + AT_rich Low_complexity Low_complexity 1 21 0 274 195 0 0 chr6 114231845 114231886 -75047668 - MER44D DNA MER2_type -1 604 564 * 2591 163 5 9 chr6 114231882 114232317 -75047237 + MER44D DNA MER2_type 301 605 0 180 348 0 0 chr6 114233376 114233422 -75046132 - L2 LINE L2 -17 3296 3251 433 287 21 28 chr6 114233445 114233588 -75045966 - MIR SINE MIR -119 143 2 355 252 42 25 chr6 114233840 114233959 -75045595 + MIR3 SINE MIR 66 186 -22 318 260 21 31 chr6 114234669 114234765 -75044789 - MIR SINE MIR -70 192 98 25 51 0 0 chr6 114235000 114235039 -75044515 + AT_rich Low_complexity Low_complexity 1 39 0 1583 141 127 0 chr6 114235584 114235860 -75043694 + AluJb SINE Alu 2 312 0 1334 163 22 76 chr6 114236072 114236191 -75043363 + L1MC3 LINE L1 7450 7574 -211 483 134 0 0 chr6 114236191 114236273 -75043281 + L1MA4 LINE L1 6215 6296 -4 1334 163 22 76 chr6 114236273 114236508 -75043046 + L1MC3 LINE L1 7574 7785 0 1516 177 26 19 chr6 114238500 114238810 -75040744 - AluJo SINE Alu 0 312 1 422 78 0 0 chr6 114239248 114239312 -75040242 + MER41A LTR ERV1 402 465 -89 204 40 0 0 chr6 114239816 114239841 -75039713 + (TG)n Simple_repeat Simple_repeat 2 26 0 472 252 145 13 chr6 114240455 114240614 -75038940 + MIR SINE MIR 81 260 -2 200 200 0 0 chr6 114242642 114242682 -75036872 + T-rich Low_complexity Low_complexity 1 40 0 381 43 0 0 chr6 114243006 114243053 -75036501 + (TG)n Simple_repeat Simple_repeat 2 48 0 252 0 0 0 chr6 114243053 114243081 -75036473 + (TA)n Simple_repeat Simple_repeat 2 29 0 189 0 0 0 chr6 114243080 114243101 -75036453 + (T)n Simple_repeat Simple_repeat 1 21 0 * 191 59 0 29 chr6 114243767 114243801 -75035753 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 1264 151 162 12 chr6 114244674 114244933 -75034621 + AluJb SINE Alu 1 298 -4 201 261 76 22 chr6 114245756 114245848 -75033706 - MIR SINE MIR -138 124 28 2269 97 0 0 chr6 114246140 114246439 -75033115 - AluSg1 SINE Alu -9 300 2 405 260 12 0 chr6 114246552 114246666 -75032888 + L1ME4a LINE L1 5727 5844 -277 1409 253 105 30 chr6 114246755 114247160 -75032394 + L1MC4 LINE L1 6345 6803 -1239 1293 224 58 4 chr6 114247160 114247437 -75032117 - AluJb SINE Alu -18 294 3 1409 253 105 30 chr6 114247437 114247573 -75031981 + L1MC4 LINE L1 6803 6927 -1115 2148 210 130 30 chr6 114247573 114248334 -75031220 + L1MC4a LINE L1 6243 7277 0 199 89 0 44 chr6 114248557 114248602 -75030952 + (TA)n Simple_repeat Simple_repeat 1 43 0 384 261 44 37 chr6 114249182 114249363 -75030191 - HAL1b LINE L1 -19 6058 1180 835 275 28 12 chr6 114249619 114249870 -75029684 + L2 LINE L2 2365 2619 -695 1460 170 38 28 chr6 114249876 114250194 -75029360 + Charlie1 DNA MER1_type 2212 2532 -229 762 333 58 36 chr6 114250229 114250646 -75028908 + L2 LINE L2 2886 3311 -2 228 317 12 24 chr6 114251275 114251357 -75028197 - L2 LINE L2 -4 3268 3188 193 372 18 35 chr6 114251446 114251559 -75027995 - L2 LINE L2 -195 3077 2967 633 268 11 91 chr6 114251913 114252178 -75027376 + L1ME1 LINE L1 63 306 -6090 3121 236 116 27 chr6 114252184 114253074 -75026480 + L1ME1 LINE L1 606 1632 -4764 2360 75 7 3 chr6 114253074 114253381 -75026173 + AluSc SINE Alu 1 308 -1 3121 236 116 27 chr6 114253381 114253689 -75025865 + L1ME1 LINE L1 1632 1911 -4485 2134 137 27 3 chr6 114253731 114254066 -75025488 + MER2 DNA MER2_type 1 343 -1 222 174 0 0 chr6 114254098 114254144 -75025410 + (TA)n Simple_repeat Simple_repeat 2 47 0 6964 240 63 40 chr6 114254149 114255846 -75023708 + L1ME1 LINE L1 2320 3975 -2240 2139 104 0 3 chr6 114255846 114256143 -75023411 - AluSc SINE Alu -7 302 7 6964 240 63 40 chr6 114256143 114256282 -75023272 + L1ME1 LINE L1 3975 4109 -2106 1279 193 67 30 chr6 114256282 114256552 -75023002 - AluJo SINE Alu -30 282 3 6964 240 63 40 chr6 114256552 114257139 -75022415 + L1ME1 LINE L1 4109 4802 -1413 1791 223 63 9 chr6 114257696 114258234 -75021320 + L1ME1 LINE L1 4851 5417 -798 2092 226 17 44 chr6 114258277 114258870 -75020684 + L1ME1 LINE L1 5524 6100 -135 22 0 0 0 chr6 114259162 114259184 -75020370 + AT_rich Low_complexity Low_complexity 1 22 0 373 329 50 50 chr6 114259345 114259471 -75020083 - L2 LINE L2 -203 3069 2941 2012 156 6 9 chr6 114259471 114259811 -75019743 - MER44D DNA MER2_type 0 609 1 373 329 50 50 chr6 114259811 114259824 -75019730 - L2 LINE L2 -330 2942 2930 21 36 0 0 chr6 114260444 114260472 -75019082 + AT_rich Low_complexity Low_complexity 1 28 0 305 279 0 81 chr6 114261900 114262011 -75017543 - L2 LINE L2 -67 3205 3104 21 0 0 0 chr6 114262431 114262452 -75017102 + AT_rich Low_complexity Low_complexity 1 21 0 280 292 69 31 chr6 114262611 114262741 -75016813 + MIR SINE MIR 19 153 -55 303 71 0 0 chr6 114262809 114262851 -75016703 + (TAA)n Simple_repeat Simple_repeat 2 43 0 21 82 0 0 chr6 114263506 114263555 -75015999 + AT_rich Low_complexity Low_complexity 1 49 0 943 184 0 0 chr6 114266521 114266689 -75012865 + AluJb SINE Alu 135 302 -10 836 216 125 4 chr6 114267793 114268057 -75011497 - L1M4 LINE L1 -2952 3194 2899 659 228 26 92 chr6 114268049 114268352 -75011202 - L1M4 LINE L1 -3630 2516 2234 * 1205 119 73 5 chr6 114268354 114268572 -75010982 + L1MA2 LINE L1 5972 6204 -100 527 294 127 30 chr6 114269728 114270027 -75009527 + MARNA DNA Mariner 9 336 -250 2089 110 13 13 chr6 114270241 114270540 -75009014 + AluSx SINE Alu 1 299 -13 438 20 0 0 chr6 114271422 114271473 -75008081 + (CA)n Simple_repeat Simple_repeat 2 52 0 529 264 91 72 chr6 114273342 114273717 -75005837 - L1ME LINE L1 -392 5729 5348 32 26 0 0 chr6 114273766 114273805 -75005749 + AT_rich Low_complexity Low_complexity 1 39 0 23 68 0 0 chr6 114274483 114274527 -75005027 + AT_rich Low_complexity Low_complexity 1 44 0 329 251 344 18 chr6 114274551 114274714 -75004840 - MIR SINE MIR -27 235 20 2143 130 116 22 chr6 114274770 114275185 -75004369 - L1MA4 LINE L1 0 6300 5847 231 36 0 0 chr6 114276135 114276163 -75003391 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 353 232 116 0 chr6 114276422 114276517 -75003037 + L1MA9 LINE L1 6167 6272 -40 368 255 85 125 chr6 114276889 114277089 -75002465 - MIR SINE MIR -65 197 6 1342 285 118 25 chr6 114277116 114277716 -75001838 + L2 LINE L2 1343 1998 -1316 26 0 0 0 chr6 114277740 114277766 -75001788 + AT_rich Low_complexity Low_complexity 1 26 0 280 293 67 12 chr6 114277778 114277802 -75001752 - HAL1b LINE L1 -3 1345 1322 465 271 87 42 chr6 114277802 114278090 -75001464 - L1ME4a LINE L1 -48 6073 1173 5695 170 37 23 chr6 114278096 114278759 -75000795 - L1PA16 LINE L1 -8 6158 5506 2000 131 0 3 chr6 114278759 114279056 -75000498 + AluSx SINE Alu 1 296 -16 5695 170 37 23 chr6 114279056 114279426 -75000128 - L1PA16 LINE L1 -660 5506 5143 1799 102 0 8 chr6 114279426 114279709 -74999845 - AluY SINE Alu 0 324 44 5695 170 37 23 chr6 114279709 114280045 -74999509 - L1PA16 LINE L1 -1023 5143 4813 2250 71 0 10 chr6 114280045 114280340 -74999214 - AluY SINE Alu -2 309 18 5695 170 37 23 chr6 114280340 114281135 -74998419 - L1PA16 LINE L1 -1353 4813 3958 1205 255 207 33 chr6 114281140 114282236 -74997318 + L2 LINE L2 1989 3307 -6 543 239 225 28 chr6 114282231 114282444 -74997110 - MIR SINE MIR 0 262 8 * 1898 171 11 22 chr6 114282762 114283131 -74996423 + MLT1A1 LTR MaLR 1 365 0 24 0 0 0 chr6 114285197 114285221 -74994333 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr6 114285354 114285389 -74994165 + AT_rich Low_complexity Low_complexity 1 35 0 201 306 163 0 chr6 114287260 114287358 -74992196 + MIR SINE MIR 149 262 0 184 294 59 82 chr6 114288103 114288273 -74991281 - L3 LINE CR1 -420 1157 992 276 127 0 0 chr6 114288395 114288450 -74991104 + (CA)n Simple_repeat Simple_repeat 2 56 0 320 221 32 32 chr6 114288451 114288546 -74991008 + L2 LINE L2 3215 3309 -4 4222 113 6 3 chr6 114288944 114289565 -74989989 - L1PA15 LINE L1 -13 6152 5530 5205 170 15 19 chr6 114289565 114290858 -74988696 - L1P4 LINE L1 -570 5595 4295 198 0 0 0 chr6 114291251 114291273 -74988281 + (TTA)n Simple_repeat Simple_repeat 3 24 0 42180 54 7 2 chr6 114291273 114297378 -74982176 - L1PA3 LINE L1 -18 6137 1 329 226 53 68 chr6 114298778 114298911 -74980643 + MIR SINE MIR 131 261 -1 521 242 47 0 chr6 114299987 114300115 -74979439 - MER94 DNA DNA 0 134 1 28 0 0 0 chr6 114301493 114301521 -74978033 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 114302008 114302029 -74977525 + AT_rich Low_complexity Low_complexity 1 21 0 336 329 13 0 chr6 114304543 114304695 -74974859 + (TA)n Simple_repeat Simple_repeat 1 154 0 3901 148 38 55 chr6 114305155 114305968 -74973586 + L1MA7 LINE L1 5476 6274 -17 275 120 80 0 chr6 114305982 114306032 -74973522 + L1M4 LINE L1 5661 5714 -470 444 278 217 34 chr6 114306281 114306482 -74973072 + MIR SINE MIR 9 252 -10 304 256 83 17 chr6 114306493 114306673 -74972881 - L1M4 LINE L1 -2976 3170 2979 429 354 34 17 chr6 114307035 114307326 -74972228 - L1M4 LINE L1 -3594 2552 2257 1022 280 77 56 chr6 114307420 114308021 -74971533 + L2 LINE L2 2706 3313 0 24 77 0 0 chr6 114308021 114308073 -74971481 + AT_rich Low_complexity Low_complexity 1 52 0 2337 79 0 7 chr6 114308332 114308636 -74970918 + AluY SINE Alu 1 302 -9 1975 206 68 3 chr6 114309862 114310315 -74969239 + L1MC4a LINE L1 6079 6242 0 355 297 97 17 chr6 114310578 114310753 -74968801 - MIR SINE MIR -54 208 20 357 82 0 0 chr6 114310832 114310881 -74968673 + (CA)n Simple_repeat Simple_repeat 2 50 0 290 363 60 12 chr6 114310887 114311055 -74968499 + MIR3 SINE MIR 31 206 -2 313 345 85 40 chr6 114311359 114311822 -74967732 + L2 LINE L2 2563 3051 -221 21 82 0 0 chr6 114312675 114312724 -74966830 + AT_rich Low_complexity Low_complexity 1 49 0 192 189 0 27 chr6 114313002 114313039 -74966515 + L2 LINE L2 3219 3254 -18 * 212 244 0 0 chr6 114313006 114313051 -74966503 + MIR SINE MIR 218 262 0 349 260 182 22 chr6 114313379 114313560 -74965994 + L1ME4a LINE L1 5657 5866 -255 345 297 123 30 chr6 114313610 114313846 -74965708 + L1ME LINE L1 5545 5802 -368 506 270 119 5 chr6 114313895 114314080 -74965474 - L1ME3A LINE L1 -3 6167 5962 * 2178 273 98 7 chr6 114314074 114315028 -74964526 - L1M4 LINE L1 -1978 4168 3129 1296 188 70 30 chr6 114315086 114315384 -74964170 - AluJo SINE Alu -2 310 1 860 272 66 16 chr6 114315771 114316014 -74963540 - MIR SINE MIR -6 256 2 25 51 0 0 chr6 114316015 114316054 -74963500 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr6 114316126 114316148 -74963406 + AT_rich Low_complexity Low_complexity 1 22 0 34 55 0 0 chr6 114316645 114316700 -74962854 + AT_rich Low_complexity Low_complexity 1 55 0 288 284 83 9 chr6 114318167 114318276 -74961278 + MIR SINE MIR 52 168 -94 1023 101 8 57 chr6 114318658 114319187 -74960367 + (TA)n Simple_repeat Simple_repeat 1 503 0 382 278 171 40 chr6 114319194 114319233 -74960321 - L1M4 LINE L1 -874 5272 5239 827 56 28 28 chr6 114319233 114319411 -74960143 + (TA)n Simple_repeat Simple_repeat 1 178 0 2362 55 3 0 chr6 114319412 114319703 -74959851 - AluY SINE Alu -19 292 1 382 278 171 40 chr6 114319703 114319988 -74959566 - L1M4 LINE L1 -906 5240 4903 27 29 0 0 chr6 114320031 114320065 -74959489 + AT_rich Low_complexity Low_complexity 1 34 0 2024 135 3 22 chr6 114320263 114320575 -74958979 + AluSx SINE Alu 1 306 -6 326 229 0 0 chr6 114322152 114322222 -74957332 - MIR SINE MIR -13 249 180 591 197 63 0 chr6 114322356 114322483 -74957071 - MER105 DNA DNA -41 163 29 28 0 0 0 chr6 114323205 114323233 -74956321 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 114323522 114323543 -74956011 + AT_rich Low_complexity Low_complexity 1 21 0 234 91 0 0 chr6 114323689 114323722 -74955832 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 4044 135 37 92 chr6 114323766 114324627 -74954927 - L1PB4 LINE L1 -23 6133 5320 687 249 127 9 chr6 114325057 114325286 -74954268 - MIR SINE MIR 0 262 7 1325 135 176 8 chr6 114325670 114325914 -74953640 - AluSg SINE Alu -15 285 1 422 326 75 5 chr6 114326028 114326215 -74953339 + MIR SINE MIR 1 200 -62 2191 95 0 11 chr6 114327623 114327949 -74951605 - AluSx SINE Alu 0 323 1 25 0 0 0 chr6 114328123 114328148 -74951406 + AT_rich Low_complexity Low_complexity 1 25 0 698 309 126 26 chr6 114328149 114328696 -74950858 + L2 LINE L2 1767 2368 -946 1905 318 59 14 chr6 114329098 114329907 -74949647 + ERVL LTR ERVL 4068 4913 -851 274 340 21 21 chr6 114330168 114330312 -74949242 + ERVL LTR ERVL 5187 5330 -324 22 0 0 0 chr6 114330634 114330656 -74948898 + AT_rich Low_complexity Low_complexity 1 22 0 1443 46 0 0 chr6 114331711 114331886 -74947668 + L1PA10 LINE L1 5730 5904 -264 23 86 0 0 chr6 114331928 114331986 -74947568 + AT_rich Low_complexity Low_complexity 1 58 0 6485 84 19 7 chr6 114332001 114332834 -74946720 + L1PA11 LINE L1 5260 6106 -68 2172 132 11 19 chr6 114332834 114333212 -74946342 + THE1C LTR MaLR 1 375 0 6485 84 19 7 chr6 114333212 114333280 -74946274 + L1PA11 LINE L1 6106 6172 -2 44 56 0 0 chr6 114333280 114333352 -74946202 + AT_rich Low_complexity Low_complexity 1 72 0 2036 33 0 0 chr6 114334527 114334770 -74944784 + L1PA4 LINE L1 5912 6154 -1 217 254 14 0 chr6 114334835 114334906 -74944648 + (TA)n Simple_repeat Simple_repeat 2 73 0 429 265 6 99 chr6 114335117 114335298 -74944256 + L1ME LINE L1 5500 5663 -458 29 28 0 0 chr6 114335489 114335525 -74944029 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr6 114335630 114335668 -74943886 + AT_rich Low_complexity Low_complexity 1 38 0 209 33 33 0 chr6 114336785 114336815 -74942739 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chr6 114336897 114336921 -74942633 + AT_rich Low_complexity Low_complexity 1 24 0 231 61 0 0 chr6 114338721 114338754 -74940800 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 986 162 8 77 chr6 114338799 114339033 -74940521 + L1MA7 LINE L1 5909 6126 -165 2227 158 33 20 chr6 114339047 114339440 -74940114 + MSTA LTR MaLR 31 428 0 657 150 85 0 chr6 114339440 114339593 -74939961 + L1MA7 LINE L1 6123 6288 -3 21 0 0 0 chr6 114339898 114339919 -74939635 + AT_rich Low_complexity Low_complexity 1 21 0 1861 145 30 0 chr6 114340534 114340830 -74938724 - AluSx SINE Alu -7 305 1 390 270 78 26 chr6 114341092 114341322 -74938232 - L1MC4a LINE L1 -1886 5922 5681 25 51 0 0 chr6 114342230 114342269 -74937285 + AT_rich Low_complexity Low_complexity 1 39 0 3981 194 38 38 chr6 114342704 114343713 -74935841 + L1MA9 LINE L1 4233 5241 -905 3433 181 27 22 chr6 114343713 114344225 -74935329 + Tigger7 DNA MER2_type 1 518 -1969 2222 92 0 35 chr6 114344225 114344542 -74935012 + AluSp SINE Alu 1 306 -7 3433 181 27 22 chr6 114344542 114344665 -74934889 + Tigger7 DNA MER2_type 518 639 -1848 2032 109 0 0 chr6 114344752 114345055 -74934499 - L1MA5A LINE L1 -1 6296 5994 381 151 41 0 chr6 114345059 114345132 -74934422 + Tigger7 DNA MER2_type 2509 2584 -3 4444 146 57 98 chr6 114345133 114345382 -74934172 + L1MA9 LINE L1 5239 5497 -815 823 127 8 15 chr6 114345382 114345516 -74934038 + FLAM_A SINE Alu 1 133 0 4444 146 57 98 chr6 114345516 114345826 -74933728 + L1MA9 LINE L1 5497 5818 -494 230 167 0 61 chr6 114345826 114345892 -74933662 - LTR66 LTR ERVL -171 439 378 4444 146 57 98 chr6 114345892 114346354 -74933200 + L1MA9 LINE L1 5818 6281 -31 14907 132 24 8 chr6 114346748 114349102 -74930452 + Tigger1 DNA MER2_type 26 2418 0 23 0 0 0 chr6 114350341 114350364 -74929190 + AT_rich Low_complexity Low_complexity 1 23 0 2185 110 3 0 chr6 114350474 114350782 -74928772 + AluSq SINE Alu 1 309 -4 23 0 0 0 chr6 114350863 114350886 -74928668 + AT_rich Low_complexity Low_complexity 1 23 0 1867 39 0 0 chr6 114351963 114352195 -74927359 - L1PA4 LINE L1 -624 5530 5299 5088 43 5 0 chr6 114352195 114352816 -74926738 + L1PA4 LINE L1 5528 6155 0 737 226 71 8 chr6 114353663 114353972 -74925582 + MER113 DNA MER1_type? 6 379 -142 1539 172 46 49 chr6 114354116 114354465 -74925089 - MER7A DNA MER2_type 0 346 1 959 241 122 32 chr6 114354852 114355222 -74924332 - L1ME1 LINE L1 -5 6161 5759 330 228 114 47 chr6 114355254 114355447 -74924107 + MLT1L LTR MaLR 38 243 -372 236 324 50 22 chr6 114355553 114355692 -74923862 + MLT1K LTR MaLR 402 544 -44 184 354 112 31 chr6 114355959 114356120 -74923434 - MIR SINE MIR -71 191 18 279 361 92 8 chr6 114356236 114356355 -74923199 + L2 LINE L2 3139 3267 -5 1265 63 0 6 chr6 114356962 114357121 -74922433 - AluY SINE Alu -23 288 131 630 296 21 5 chr6 114358592 114358781 -74920773 - MIR SINE MIR -24 238 47 21 36 0 0 chr6 114360755 114360783 -74918771 + AT_rich Low_complexity Low_complexity 1 28 0 41 21 0 0 chr6 114362303 114362351 -74917203 + AT_rich Low_complexity Low_complexity 1 48 0 2011 110 0 0 chr6 114363999 114364272 -74915282 + AluSg SINE Alu 1 273 -37 25 31 0 0 chr6 114365503 114365535 -74914019 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 114367654 114367675 -74911879 + AT_rich Low_complexity Low_complexity 1 21 0 184 267 58 83 chr6 114368655 114368775 -74910779 - L2 LINE L2 -39 3233 3117 206 195 24 0 chr6 114369535 114369576 -74909978 + L2 LINE L2 3227 3268 -4 241 316 137 35 chr6 114370833 114371018 -74908536 + MIR SINE MIR 23 245 -17 324 0 0 0 chr6 114371965 114372001 -74907553 + (CA)n Simple_repeat Simple_repeat 1 36 0 280 242 247 55 chr6 114373512 114373694 -74905860 + L2 LINE L2 2745 2961 -353 477 197 66 49 chr6 114373707 114373829 -74905725 + MER90 LTR ERV1 490 613 -1 3734 177 43 15 chr6 114373872 114374584 -74904970 + MER44D DNA MER2_type 2 605 0 2037 110 0 55 chr6 114376084 114376411 -74903143 + AluSc SINE Alu 1 309 0 2168 274 27 36 chr6 114376471 114377247 -74902307 - L1ME1 LINE L1 -24 6142 5374 185 319 0 0 chr6 114377258 114377305 -74902249 + MER5A DNA MER1_type 137 183 -6 211 341 61 0 chr6 114377745 114377827 -74901727 + L2 LINE L2 3186 3272 0 295 242 16 0 chr6 114378464 114378526 -74901028 - L2 LINE L2 -527 2787 2725 677 223 34 29 chr6 114378668 114378843 -74900711 + MER58A DNA MER1_type 24 199 -25 489 295 140 32 chr6 114379098 114379498 -74900056 + L1MC4a LINE L1 3510 3952 -2194 311 301 147 31 chr6 114379509 114379795 -74899759 + L1MC4a LINE L1 4016 4334 -1812 51 89 0 0 chr6 114379819 114379954 -74899600 + AT_rich Low_complexity Low_complexity 1 135 0 304 321 164 23 chr6 114379975 114380414 -74899140 + L1MC4a LINE L1 4334 4834 -1312 26 0 0 0 chr6 114380525 114380551 -74899003 + AT_rich Low_complexity Low_complexity 1 26 0 489 283 59 32 chr6 114380737 114380924 -74898630 + L1MC4a LINE L1 5321 5512 -609 1538 174 16 40 chr6 114380932 114381236 -74898318 + MER2 DNA MER2_type 1 297 -48 495 181 69 52 chr6 114381234 114381350 -74898204 + MER2 DNA MER2_type 228 345 0 * 726 337 47 16 chr6 114381355 114381738 -74897816 + L1MC4a LINE L1 5531 5925 -1883 267 310 100 35 chr6 114382710 114382910 -74896644 + L2 LINE L2 3006 3218 -95 269 256 12 35 chr6 114383381 114383467 -74896087 + LTR33A LTR ERVL 440 523 0 185 342 26 13 chr6 114383507 114383583 -74895971 + L2 LINE L2 3190 3266 -6 24 32 0 0 chr6 114383888 114383919 -74895635 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr6 114384898 114384934 -74894620 + AT_rich Low_complexity Low_complexity 1 36 0 194 336 160 23 chr6 114385211 114385273 -74894281 - MIR SINE MIR -10 252 200 2253 90 7 3 chr6 114385273 114385573 -74893981 - AluSx SINE Alu -11 301 1 194 336 160 23 chr6 114385573 114385641 -74893913 - MIR SINE MIR -62 200 104 23 68 0 0 chr6 114385772 114385816 -74893738 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr6 114386639 114386671 -74892883 + AT_rich Low_complexity Low_complexity 1 32 0 273 29 0 0 chr6 114387392 114387426 -74892128 + (CA)n Simple_repeat Simple_repeat 1 34 0 454 271 76 28 chr6 114388052 114388196 -74891358 + MIR SINE MIR 3 153 -109 21 57 0 0 chr6 114388445 114388480 -74891074 + AT_rich Low_complexity Low_complexity 1 35 0 357 206 134 0 chr6 114388681 114388778 -74890776 + MIR SINE MIR 143 252 -10 212 214 0 0 chr6 114389223 114389265 -74890289 + L2 LINE L2 3210 3251 -21 24 0 0 0 chr6 114389285 114389309 -74890245 + AT_rich Low_complexity Low_complexity 1 24 0 487 269 167 5 chr6 114389370 114389556 -74889998 - MER58A DNA MER1_type 0 224 9 284 325 208 0 chr6 114389644 114389764 -74889790 - MER5A DNA MER1_type -1 188 44 649 146 129 18 chr6 114389809 114389980 -74889574 - Charlie1 DNA MER1_type -1 2760 2571 2527 74 0 0 chr6 114392088 114392397 -74887157 + AluSc SINE Alu 1 309 0 192 77 0 0 chr6 114392857 114392883 -74886671 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 206 294 37 28 chr6 114392894 114393003 -74886551 - L2 LINE L2 -43 3270 3161 183 397 99 23 chr6 114393006 114393137 -74886417 - L2 LINE L2 -5 3267 3127 304 236 42 0 chr6 114393218 114393290 -74886264 - L2 LINE L2 0 3313 3239 310 301 44 29 chr6 114393484 114393620 -74885934 + MER5A DNA MER1_type 7 144 -45 307 301 41 24 chr6 114393510 114393633 -74885921 - MER5A DNA MER1_type -22 167 43 * 22 35 0 0 chr6 114394432 114394461 -74885093 + AT_rich Low_complexity Low_complexity 1 29 0 588 196 84 39 chr6 114394977 114395156 -74884398 - MER5A DNA MER1_type -2 187 1 2528 49 0 3 chr6 114395444 114395748 -74883806 - AluY SINE Alu -8 303 1 233 217 0 0 chr6 114396007 114396053 -74883501 + MER105 DNA DNA 5 50 -154 183 42 0 0 chr6 114396089 114396113 -74883441 + (CAG)n Simple_repeat Simple_repeat 1 24 0 548 132 33 0 chr6 114396118 114396209 -74883345 + MER5A DNA MER1_type 96 189 0 300 253 10 50 chr6 114396212 114396311 -74883243 + MER105 DNA DNA 49 143 -61 180 271 83 0 chr6 114396649 114396697 -74882857 + L2 LINE L2 3217 3268 -4 411 209 47 0 chr6 114396797 114396883 -74882671 + MIR SINE MIR 165 254 -8 981 203 58 80 chr6 114397112 114397423 -74882131 - L1MC4a LINE L1 -1892 5916 5613 313 302 24 30 chr6 114397471 114397640 -74881914 - L1MC4a LINE L1 -827 5319 5152 216 0 0 0 chr6 114397653 114397677 -74881877 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 306 0 0 0 chr6 114397676 114397710 -74881844 + (CA)n Simple_repeat Simple_repeat 1 34 0 1300 83 0 0 chr6 114398001 114398170 -74881384 - AluSc SINE Alu -9 300 132 29 0 0 0 chr6 114398174 114398203 -74881351 + AT_rich Low_complexity Low_complexity 1 29 0 367 264 103 19 chr6 114399884 114400039 -74879515 - MIR SINE MIR -1 261 94 1885 145 62 3 chr6 114400695 114401020 -74878534 + MER2 DNA MER2_type 1 344 0 461 301 110 6 chr6 114402453 114402657 -74876897 + MIR SINE MIR 25 245 -17 425 256 17 26 chr6 114402796 114402913 -74876641 - L3 LINE CR1 -297 1280 1165 24 0 0 0 chr6 114403001 114403025 -74876529 + AT_rich Low_complexity Low_complexity 1 24 0 281 299 127 22 chr6 114403353 114403487 -74876067 + MIR3 SINE MIR 30 177 -31 24 0 0 0 chr6 114403547 114403571 -74875983 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 114404496 114404521 -74875033 + AT_rich Low_complexity Low_complexity 1 25 0 1408 168 3 62 chr6 114404836 114405127 -74874427 + AluJo SINE Alu 11 284 -28 1583 218 123 43 chr6 114405168 114405984 -74873570 + L1MC4 LINE L1 6783 7706 -336 279 125 0 0 chr6 114405983 114406031 -74873523 + L1 LINE L1 3707 3754 -2392 * 280 317 54 37 chr6 114406367 114406520 -74873034 + LTR40a LTR ERVL 135 314 -177 332 188 16 0 chr6 114406562 114406626 -74872928 + LTR40a LTR ERVL 454 518 -1 291 261 14 0 chr6 114409558 114409627 -74869927 - L2 LINE L2 0 3272 3203 355 222 0 0 chr6 114409629 114409692 -74869862 + Tigger3(Golem) DNA MER2_type 3 65 -2964 578 107 0 24 chr6 114409696 114409780 -74869774 + Tigger3(Golem) DNA MER2_type 2886 2967 -62 2213 129 8 32 chr6 114409791 114410162 -74869392 + THE1B LTR MaLR 3 364 0 10459 97 59 1 chr6 114410162 114411655 -74867899 + THE1B-int LTR MaLR 1 1580 0 718 93 0 0 chr6 114411655 114411752 -74867802 + THE1B LTR MaLR 1 97 -267 1634 122 15 33 chr6 114411907 114412177 -74867377 + THE1B LTR MaLR 100 364 0 325 137 0 20 chr6 114412179 114412230 -74867324 + Tigger3(Golem) DNA MER2_type 2975 3024 -5 589 328 101 57 chr6 114412479 114413373 -74866181 - L2 LINE L2 -342 2972 2040 24 0 0 0 chr6 114414233 114414257 -74865297 + AT_rich Low_complexity Low_complexity 1 24 0 27 73 0 0 chr6 114414556 114414611 -74864943 + AT_rich Low_complexity Low_complexity 1 55 0 22 94 0 0 chr6 114415152 114415216 -74864338 + AT_rich Low_complexity Low_complexity 1 64 0 205 229 33 16 chr6 114416653 114416714 -74862840 + (CATA)n Simple_repeat Simple_repeat 3 64 0 21 0 0 0 chr6 114417897 114417918 -74861636 + AT_rich Low_complexity Low_complexity 1 21 0 211 224 0 0 chr6 114418173 114418222 -74861332 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 844 334 180 15 chr6 114418373 114419089 -74860465 - L3 LINE CR1 -63 1514 681 1019 184 5 30 chr6 114419159 114419360 -74860194 + MER20 DNA MER1_type 7 202 -17 21 57 0 0 chr6 114419864 114419899 -74859655 + AT_rich Low_complexity Low_complexity 1 35 0 280 331 72 0 chr6 114420060 114420199 -74859355 + MIR SINE MIR 40 188 -74 30 0 0 0 chr6 114421422 114421452 -74858102 + AT_rich Low_complexity Low_complexity 1 30 0 2328 101 0 10 chr6 114422084 114422391 -74857163 + AluSp SINE Alu 1 304 -9 4950 185 78 23 chr6 114422494 114423391 -74856163 + L1MC1 LINE L1 4667 5696 -637 2291 98 0 3 chr6 114423391 114423696 -74855858 - AluY SINE Alu -6 305 2 4950 185 78 23 chr6 114423696 114424371 -74855183 + L1MC1 LINE L1 5696 6333 0 1035 205 5 5 chr6 114424704 114424894 -74854660 + MER58A DNA MER1_type 35 224 0 22 56 0 0 chr6 114424954 114424990 -74854564 + AT_rich Low_complexity Low_complexity 1 36 0 404 285 35 21 chr6 114425088 114425232 -74854322 + MIR SINE MIR 60 205 -57 24 0 0 0 chr6 114425887 114425911 -74853643 + AT_rich Low_complexity Low_complexity 1 24 0 241 163 0 0 chr6 114426796 114426839 -74852715 + L1MA4 LINE L1 6175 6217 -83 21 0 0 0 chr6 114428254 114428275 -74851279 + AT_rich Low_complexity Low_complexity 1 21 0 1354 181 82 31 chr6 114429159 114429451 -74850103 + AluJo SINE Alu 5 311 -1 301 167 65 22 chr6 114431505 114431643 -74847911 + (TA)n Simple_repeat Simple_repeat 1 144 0 45 34 0 0 chr6 114431660 114431719 -74847835 + AT_rich Low_complexity Low_complexity 1 59 0 2774 192 0 4 chr6 114432521 114433077 -74846477 - L1P LINE L1 -984 5162 4609 574 56 11 34 chr6 114433077 114433166 -74846388 + L1PA16 LINE L1 6080 6166 0 419 266 70 39 chr6 114433221 114433349 -74846205 + L2 LINE L2 3182 3313 0 326 256 37 59 chr6 114433524 114433742 -74845812 - L1MC4a LINE L1 -302 5819 5630 22 0 0 0 chr6 114433923 114433945 -74845609 + AT_rich Low_complexity Low_complexity 1 22 0 554 129 16 16 chr6 114434558 114434682 -74844872 + (TA)n Simple_repeat Simple_repeat 1 124 0 195 69 0 0 chr6 114434838 114434867 -74844687 + (A)n Simple_repeat Simple_repeat 1 29 0 298 341 159 45 chr6 114435596 114435886 -74843668 - L2 LINE L2 -2068 1246 924 931 147 7 0 chr6 114437178 114437314 -74842240 - MER46A DNA MER2_type -99 137 1 288 0 0 0 chr6 114438347 114438379 -74841175 + (CAA)n Simple_repeat Simple_repeat 2 33 0 268 246 119 40 chr6 114438503 114438629 -74840925 + L1ME2 LINE L1 5965 6100 -64 28 61 0 0 chr6 114438875 114438924 -74840630 + AT_rich Low_complexity Low_complexity 1 49 0 209 264 0 0 chr6 114438928 114438981 -74840573 + GA-rich Low_complexity Low_complexity 2 54 0 1337 256 9 45 chr6 114438984 114439410 -74840144 + L1ME3A LINE L1 5441 5851 -319 413 326 68 42 chr6 114439558 114439794 -74839760 + L3 LINE CR1 285 526 -1051 228 288 0 0 chr6 114439906 114439965 -74839589 + GA-rich Low_complexity Low_complexity 2 60 0 262 205 39 26 chr6 114440637 114440715 -74838839 - HsTC2 DNA Tc2 0 1898 1820 1474 201 29 0 chr6 114440720 114441029 -74838525 + AluJo SINE Alu 1 317 0 2242 100 7 0 chr6 114442577 114442886 -74836668 + AluSq SINE Alu 1 311 -2 1509 175 107 38 chr6 114443993 114444359 -74835195 + MSTB1 LTR MaLR 40 430 -2 716 257 68 14 chr6 114445124 114445346 -74834208 + MIR SINE MIR 29 262 0 304 298 85 7 chr6 114446263 114446404 -74833150 + L1MC/D LINE L1 5547 5698 -2110 259 319 44 26 chr6 114446686 114446799 -74832755 + L2 LINE L2 3142 3256 -16 1887 83 16 0 chr6 114446960 114447212 -74832342 + AluSq SINE Alu 40 295 -18 1888 132 7 14 chr6 114447564 114447859 -74831695 + AluSx SINE Alu 1 293 -19 6185 94 16 6 chr6 114447932 114449469 -74830085 - L1PA11 LINE L1 -16 7596 6040 16203 214 27 17 chr6 114449470 114454081 -74825473 - L1PA11 LINE L1 -1825 5759 11 236 308 26 34 chr6 114454481 114454598 -74824956 + MIR SINE MIR 118 233 -29 25 0 0 0 chr6 114454924 114454949 -74824605 + AT_rich Low_complexity Low_complexity 1 25 0 2205 100 7 0 chr6 114455744 114456034 -74823520 + AluSg SINE Alu 1 292 -18 1120 135 0 38 chr6 114456034 114456219 -74823335 + AluSg/x SINE Alu 132 309 0 629 241 89 16 chr6 114456305 114456496 -74823058 + MER3 DNA MER1_type 3 207 -2 22 0 0 0 chr6 114456668 114456690 -74822864 + AT_rich Low_complexity Low_complexity 1 22 0 583 307 88 8 chr6 114456731 114456969 -74822585 - MIR SINE MIR -4 258 2 21 0 0 0 chr6 114457125 114457146 -74822408 + AT_rich Low_complexity Low_complexity 1 21 0 881 238 60 0 chr6 114457375 114457633 -74821921 + L1ME4a LINE L1 4622 4893 -1253 2405 233 56 30 chr6 114457633 114458440 -74821114 + L1ME4a LINE L1 5172 5999 -167 529 164 45 0 chr6 114458444 114458554 -74821000 + L1MA10 LINE L1 6210 6324 -10 25 65 0 0 chr6 114459357 114459403 -74820151 + AT_rich Low_complexity Low_complexity 1 46 0 248 197 30 0 chr6 114460108 114460174 -74819380 + L1ME4a LINE L1 6052 6119 -2 46 74 0 0 chr6 114460537 114460632 -74818922 + AT_rich Low_complexity Low_complexity 1 95 0 327 211 0 0 chr6 114462316 114462373 -74817181 + MER46C DNA MER2_type 167 223 -115 347 224 0 0 chr6 114462405 114462472 -74817082 + Tigger6 DNA MER2_type 1530 1596 -1 843 212 0 50 chr6 114464193 114464372 -74815182 - FAM SINE Alu -5 170 1 1913 107 90 90 chr6 114465036 114465403 -74814151 - L1MA2 LINE L1 0 6304 5935 2462 132 3 3 chr6 114465403 114465766 -74813788 + THE1B LTR MaLR 1 363 -1 1913 107 90 90 chr6 114465766 114465820 -74813734 - L1MA2 LINE L1 -368 5936 5883 731 179 8 8 chr6 114466063 114466197 -74813357 - AluJb SINE Alu -12 300 167 183 42 0 0 chr6 114466334 114466358 -74813196 + (CA)n Simple_repeat Simple_repeat 2 25 0 249 33 0 0 chr6 114467041 114467071 -74812483 + (TTTAA)n Simple_repeat Simple_repeat 1 30 0 617 290 97 67 chr6 114467392 114467598 -74811956 + L1M4 LINE L1 4585 4783 -1363 201 39 0 0 chr6 114467598 114467624 -74811930 + (CA)n Simple_repeat Simple_repeat 2 27 0 617 290 97 67 chr6 114467624 114467973 -74811581 + L1M4 LINE L1 4783 5157 -989 915 244 106 25 chr6 114467993 114468350 -74811204 + L1ME1 LINE L1 34 419 -6121 686 209 35 12 chr6 114468416 114468588 -74810966 + L1ME1 LINE L1 1002 1177 -5363 9652 100 49 11 chr6 114468610 114470881 -74808673 - L1PA8A LINE L1 -13 6118 3754 2453 207 58 45 chr6 114470880 114471563 -74807991 + L1ME1 LINE L1 1165 1861 -4679 * 1536 216 10 0 chr6 114471563 114471864 -74807690 + AluJb SINE Alu 1 304 -8 2453 207 58 45 chr6 114471864 114471949 -74807605 + L1ME1 LINE L1 1861 1943 -4597 1684 221 65 30 chr6 114473811 114474303 -74805251 + LTR22 LTR ERVK 1 509 0 270 330 125 0 chr6 114474316 114474428 -74805126 + MIR SINE MIR 107 232 -30 372 235 20 10 chr6 114474926 114475028 -74804526 - Charlie1 DNA MER1_type -1 2760 2658 253 170 0 0 chr6 114475035 114475082 -74804472 - Alu SINE Alu -3 305 259 554 151 7 122 chr6 114475083 114475222 -74804332 - MLT1A2 LTR MaLR -248 126 4 1514 177 46 31 chr6 114475224 114475574 -74803980 + MLT1C LTR MaLR 68 422 -45 3401 102 112 9 chr6 114475574 114476121 -74803433 + MER4B LTR ERV1 1 603 -7 273 250 0 0 chr6 114476120 114476176 -74803378 + MLT1C LTR MaLR 412 467 0 * 2278 64 6 29 chr6 114477955 114478269 -74801285 - AluY SINE Alu -4 307 1 460 232 18 27 chr6 114478582 114478694 -74800860 - MIR SINE MIR -64 198 88 3756 256 91 47 chr6 114478767 114479473 -74800081 + L1ME1 LINE L1 2712 3386 -3174 2020 163 54 3 chr6 114479473 114479860 -74799694 + L1MA6 LINE L1 5894 6300 0 3756 256 91 47 chr6 114479860 114482218 -74797336 + L1ME1 LINE L1 3386 5990 -570 1736 154 6 13 chr6 114482218 114482530 -74797024 - AluY SINE Alu -1 310 1 3756 256 91 47 chr6 114482530 114482800 -74796754 + L1ME1 LINE L1 5990 6247 -313 278 328 61 8 chr6 114482983 114483114 -74796440 + MIR SINE MIR 1 138 -124 202 231 77 0 chr6 114483127 114483179 -74796375 + MIR SINE MIR 83 138 -124 505 288 195 0 chr6 114483243 114483448 -74796106 - MIR SINE MIR -3 259 15 198 247 34 56 chr6 114483628 114483717 -74795837 + L2 LINE L2 2679 2765 -549 284 267 30 40 chr6 114483949 114484050 -74795504 + L2 LINE L2 3208 3307 -6 741 162 0 0 chr6 114484451 114484568 -74794986 - AluJo SINE Alu -25 287 171 767 207 0 47 chr6 114484623 114484652 -74794902 - AluJo SINE Alu -151 161 132 2055 126 0 0 chr6 114484652 114484945 -74794609 - AluY SINE Alu -18 293 1 767 207 0 47 chr6 114484945 114485084 -74794470 - AluJo SINE Alu -180 132 1 203 301 0 97 chr6 114485347 114485460 -74794094 - L2 LINE L2 -1 3271 3170 413 222 0 40 chr6 114485678 114485777 -74793777 - MIR SINE MIR -132 130 36 22 35 0 0 chr6 114486356 114486385 -74793169 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr6 114486997 114487028 -74792526 + AT_rich Low_complexity Low_complexity 1 31 0 1082 309 148 29 chr6 114487632 114488578 -74790976 - L2 LINE L2 0 3313 2252 330 270 73 0 chr6 114489404 114489541 -74790013 + L1ME4a LINE L1 5756 5902 -219 656 214 0 0 chr6 114489541 114489672 -74789882 - FLAM_A SINE Alu -2 131 1 21 36 0 0 chr6 114490263 114490291 -74789263 + AT_rich Low_complexity Low_complexity 1 28 0 520 225 62 5 chr6 114490303 114490565 -74788989 - MER33 DNA MER1_type 0 324 1 792 247 6 0 chr6 114490739 114490901 -74788653 + FRAM SINE Alu 1 163 -3 219 404 73 0 chr6 114491263 114491372 -74788182 + L2 LINE L2 3140 3256 -16 21 71 0 0 chr6 114491537 114491579 -74787975 + AT_rich Low_complexity Low_complexity 1 42 0 2016 94 0 24 chr6 114491657 114491968 -74787586 - AluSc SINE Alu 0 304 1 21 0 0 0 chr6 114492209 114492230 -74787324 + AT_rich Low_complexity Low_complexity 1 21 0 662 261 97 4 chr6 114492455 114492693 -74786861 - MER112 DNA MER1_type 0 260 1 985 249 88 16 chr6 114492809 114493174 -74786380 + L1MC4a LINE L1 5618 6008 -1800 244 259 38 76 chr6 114493405 114493563 -74785991 - L3 LINE CR1 -234 1343 1192 735 332 13 0 chr6 114494107 114494336 -74785218 - MIR SINE MIR -2 260 29 299 289 41 62 chr6 114494626 114494820 -74784734 + L1ME LINE L1 5599 5788 -333 1720 158 0 38 chr6 114495700 114495992 -74783562 - AluJo SINE Alu -31 281 1 832 152 60 60 chr6 114497296 114497480 -74782074 + MLT1E LTR MaLR 2 185 -408 2685 226 88 57 chr6 114497515 114499307 -74780247 + L1ME1 LINE L1 4325 6159 -7 227 149 0 21 chr6 114499371 114499418 -74780136 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 180 375 33 25 chr6 114500602 114500722 -74778832 + L2 LINE L2 3142 3262 -10 26 0 0 0 chr6 114501331 114501357 -74778197 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr6 114501367 114501404 -74778150 + AT_rich Low_complexity Low_complexity 1 37 0 325 313 123 19 chr6 114502182 114502393 -74777161 + MLT1L LTR MaLR 381 613 -2 297 267 36 0 chr6 114504010 114504127 -74775427 - MIR SINE MIR -147 115 15 330 337 139 36 chr6 114504187 114504605 -74774949 + L2 LINE L2 2397 2857 -457 230 295 92 95 chr6 114505209 114505504 -74774050 + MLT1K LTR MaLR 14 307 -281 304 291 47 29 chr6 114505688 114505860 -74773694 + MLT1K LTR MaLR 411 585 -3 1255 179 21 45 chr6 114506340 114506691 -74772863 + L1MC/D LINE L1 5400 5713 -529 1336 226 31 55 chr6 114506694 114507075 -74772479 + MLT1B LTR MaLR 1 372 -18 189 0 0 0 chr6 114507137 114507158 -74772396 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 455 141 13 26 chr6 114507178 114507256 -74772298 + MLT1D LTR MaLR 1 77 -428 2267 93 0 37 chr6 114507449 114507772 -74771782 + AluSp SINE Alu 3 313 0 28 48 0 0 chr6 114507773 114507815 -74771739 + AT_rich Low_complexity Low_complexity 1 42 0 286 312 70 83 chr6 114507885 114508042 -74771512 - MER5B DNA MER1_type -3 175 21 260 243 72 18 chr6 114508480 114508591 -74770963 + L1MC4 LINE L1 7926 8042 0 36 62 0 0 chr6 114511067 114511131 -74768423 + AT_rich Low_complexity Low_complexity 1 64 0 247 282 73 55 chr6 114511570 114511680 -74767874 - L2 LINE L2 -10 3262 3151 1472 145 41 0 chr6 114512594 114512836 -74766718 + MSTA LTR MaLR 177 428 0 1416 207 10 37 chr6 114512997 114513297 -74766257 + AluJb SINE Alu 1 292 -20 1725 162 38 27 chr6 114513489 114513860 -74765694 + THE1C LTR MaLR 1 375 0 427 234 181 32 chr6 114514392 114514640 -74764914 + L1MC4 LINE L1 7758 8042 0 337 109 0 0 chr6 114514707 114514753 -74764801 - L1PA16 LINE L1 -969 5177 5132 * 3506 128 44 0 chr6 114514749 114515371 -74764183 + L1PA16 LINE L1 5186 5836 -330 1856 165 29 0 chr6 114515478 114515794 -74763760 + L1PA16 LINE L1 5827 6151 -15 21 57 0 0 chr6 114516360 114516395 -74763159 + AT_rich Low_complexity Low_complexity 1 35 0 323 280 69 51 chr6 114517131 114517306 -74762248 - MIR SINE MIR -14 248 71 5280 199 45 27 chr6 114517717 114518994 -74760560 + Charlie1a DNA MER1_type 11 1311 -144 3905 144 47 29 chr6 114518999 114519737 -74759817 - Tigger3(Golem) DNA MER2_type -1 3028 2277 624 181 29 0 chr6 114519727 114519832 -74759722 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 688 199 14 7 chr6 114519832 114519973 -74759581 + Charlie1a DNA MER1_type 1314 1455 0 218 374 20 27 chr6 114520473 114520620 -74758934 + L2 LINE L2 2911 3056 -216 26 30 0 0 chr6 114521505 114521538 -74758016 + AT_rich Low_complexity Low_complexity 1 33 0 305 202 35 192 chr6 114521770 114521973 -74757581 + L1MC/D LINE L1 5315 5485 -2323 1941 244 66 80 chr6 114522078 114522927 -74756627 + L1MB8 LINE L1 890 1729 -5126 1769 171 0 0 chr6 114522927 114523213 -74756341 + AluJo SINE Alu 1 286 -26 1941 244 66 80 chr6 114523213 114523451 -74756103 + L1MB8 LINE L1 1729 1969 -4886 1920 142 7 10 chr6 114523453 114523763 -74755791 + AluSp SINE Alu 1 309 -4 326 324 0 0 chr6 114523768 114523873 -74755681 + L1MB8 LINE L1 2406 2510 -4628 189 121 0 0 chr6 114523901 114523934 -74755620 + (TG)n Simple_repeat Simple_repeat 2 34 0 266 271 10 0 chr6 114524000 114524096 -74755458 + L1MB8 LINE L1 3324 3420 -3537 6665 171 16 7 chr6 114524100 114525338 -74754216 - L1PA13 LINE L1 -1870 4276 3028 5876 112 14 2 chr6 114525340 114527198 -74752356 + L1PA13 LINE L1 4283 6158 -5 26 50 0 0 chr6 114527198 114527238 -74752316 + AT_rich Low_complexity Low_complexity 1 40 0 3881 231 64 21 chr6 114527238 114528543 -74751011 + L1MB8 LINE L1 3419 4666 -2291 269 280 13 0 chr6 114528543 114528566 -74750988 + AluSp SINE Alu 112 135 -168 1973 139 10 16 chr6 114528566 114528876 -74750678 + AluSg SINE Alu 1 308 -2 3881 231 64 21 chr6 114528618 114529196 -74750358 + L1MB8 LINE L1 4666 5192 -1765 3173 47 7 2 chr6 114529196 114529601 -74749953 + L1PA6 LINE L1 5743 6149 -5 3881 231 64 21 chr6 114529601 114529627 -74749927 + L1MB8 LINE L1 5192 5215 -1742 1972 172 35 43 chr6 114529630 114530180 -74749374 - MLT2A2 LTR ERVL 0 554 5 3198 211 69 24 chr6 114530200 114531311 -74748243 + L1MB8 LINE L1 5233 6293 -696 1520 197 49 0 chr6 114531311 114531595 -74747959 - AluJo SINE Alu -14 298 1 3198 211 69 24 chr6 114531595 114531823 -74747731 + L1MB8 LINE L1 6293 6509 -480 2178 127 0 0 chr6 114531823 114532130 -74747424 + AluSg SINE Alu 1 307 -3 3198 211 69 24 chr6 114532130 114532475 -74747079 + L1MB8 LINE L1 6509 6982 -7 1986 147 3 0 chr6 114532535 114532834 -74746720 + AluJb SINE Alu 2 301 -11 270 32 0 0 chr6 114534783 114534814 -74744740 + U2 snRNA snRNA 1 31 -157 542 317 110 74 chr6 114534844 114535424 -74744130 + L3 LINE CR1 563 1163 -414 981 112 0 21 chr6 114535442 114535585 -74743969 - MER30 DNA MER1_type 0 230 91 2941 115 2 0 chr6 114535755 114536198 -74743356 - L1P LINE L1 -4369 1777 1334 553 335 118 55 chr6 114536198 114536414 -74743140 - L3 LINE CR1 -493 1084 883 2219 91 7 3 chr6 114536414 114536710 -74742844 - AluSg SINE Alu -13 297 1 553 335 118 55 chr6 114536710 114536926 -74742628 - L3 LINE CR1 -694 883 625 864 217 11 0 chr6 114537153 114537333 -74742221 - MER3 DNA MER1_type -9 200 19 2181 165 13 45 chr6 114537449 114537897 -74741657 - L1MC2 LINE L1 -194 6150 5717 530 140 21 54 chr6 114538628 114538721 -74740833 - MER44D DNA MER2_type -1 704 615 3327 121 173 105 chr6 114538724 114540031 -74739523 - pTR5 LTR ERV1 0 2438 747 1996 155 106 24 chr6 114540031 114540457 -74739097 - MER44D DNA MER2_type -87 518 3 455 211 35 26 chr6 114540811 114540925 -74738629 + LTR40b LTR ERVL 244 358 -104 26 50 0 0 chr6 114541425 114541465 -74738089 + AT_rich Low_complexity Low_complexity 1 40 0 285 228 62 71 chr6 114542254 114542465 -74737089 + L1MEd LINE L1 1008 1216 -4903 333 264 68 64 chr6 114542497 114542793 -74736761 + L1MEd LINE L1 1355 1651 -4478 216 209 0 55 chr6 114543245 114543297 -74736257 + A-rich Low_complexity Low_complexity 2 48 -39 2922 164 44 24 chr6 114543297 114543911 -74735643 + L1MC2 LINE L1 5710 6335 -9 216 209 0 55 chr6 114543911 114543949 -74735605 + A-rich Low_complexity Low_complexity 48 87 0 1663 132 48 0 chr6 114544085 114544335 -74735219 + AluSx SINE Alu 11 272 -40 498 320 130 18 chr6 114544798 114545236 -74734318 + L1MEd LINE L1 3141 3627 -2502 9265 171 33 9 chr6 114545470 114547264 -74732290 - L1MA6 LINE L1 -908 5238 3403 6152 126 22 19 chr6 114547267 114548310 -74731244 + L1MA6 LINE L1 5255 6300 0 241 260 0 0 chr6 114549112 114549162 -74730392 + (TATG)n Simple_repeat Simple_repeat 3 52 0 497 342 166 3 chr6 114549825 114550144 -74729410 - L3 LINE CR1 -17 1560 1190 903 163 47 0 chr6 114550611 114550783 -74728771 - AluJb SINE Alu -13 299 120 298 312 179 33 chr6 114551527 114551949 -74727605 + L3 LINE CR1 35 594 -983 1799 185 48 75 chr6 114552595 114552968 -74726586 + Charlie1b DNA MER1_type 2 358 -2403 1627 201 0 19 chr6 114552968 114553286 -74726268 + AluJo SINE Alu 1 312 0 1799 185 48 75 chr6 114553286 114553448 -74726106 + Charlie1b DNA MER1_type 358 523 0 306 273 188 36 chr6 114554202 114554367 -74725187 - MIR SINE MIR -18 244 55 192 256 134 49 chr6 114554482 114554564 -74724990 + MIR SINE MIR 58 146 -62 21 0 0 0 chr6 114555727 114555748 -74723806 + AT_rich Low_complexity Low_complexity 1 21 0 322 255 122 31 chr6 114555827 114555925 -74723629 + MIR SINE MIR 156 262 0 340 319 43 22 chr6 114557153 114557291 -74722263 + L2 LINE L2 3168 3308 -5 346 284 127 46 chr6 114557895 114558092 -74721462 - MIR SINE MIR -44 218 6 1647 179 28 3 chr6 114559108 114559398 -74720156 + AluJb SINE Alu 3 299 -13 2155 109 7 3 chr6 114560105 114560408 -74719146 + AluSx SINE Alu 9 312 0 23 0 0 0 chr6 114561304 114561327 -74718227 + AT_rich Low_complexity Low_complexity 1 23 0 202 275 72 0 chr6 114561370 114561439 -74718115 - MIR SINE MIR -114 148 75 23 0 0 0 chr6 114561555 114561578 -74717976 + AT_rich Low_complexity Low_complexity 1 23 0 242 217 84 12 chr6 114561609 114561692 -74717862 + L1MC/D LINE L1 5703 5791 -2017 23 0 0 0 chr6 114563455 114563478 -74716076 + AT_rich Low_complexity Low_complexity 1 23 0 435 52 0 0 chr6 114563700 114563758 -74715796 - Alu SINE Alu -11 300 243 1774 155 11 3 chr6 114563758 114564042 -74715512 - AluSx SINE Alu -26 286 1 2086 131 0 10 chr6 114565390 114565696 -74713858 - AluJb SINE Alu -9 303 1 328 255 177 0 chr6 114566083 114566224 -74713330 - MIR SINE MIR -48 214 49 1946 273 126 17 chr6 114566763 114568140 -74711414 - L1ME3A LINE L1 -7 6163 4479 324 70 0 0 chr6 114568140 114568183 -74711371 + (CA)n Simple_repeat Simple_repeat 1 43 0 1946 273 126 17 chr6 114568183 114568854 -74710700 - L1ME3A LINE L1 -1691 4479 3883 531 260 115 34 chr6 114568946 114569242 -74710312 - L1MC4 LINE L1 -138 7904 7585 270 291 31 8 chr6 114569257 114569384 -74710170 - L1ME3A LINE L1 -2599 3547 3418 30 69 0 0 chr6 114570592 114570650 -74708904 + AT_rich Low_complexity Low_complexity 1 58 0 296 305 12 0 chr6 114571524 114571606 -74707948 + MIR3 SINE MIR 101 183 -25 689 341 139 20 chr6 114572892 114573346 -74706208 - L2 LINE L2 -1 3312 2805 1819 157 0 26 chr6 114573897 114574202 -74705352 - AluJb SINE Alu -15 297 1 183 80 0 0 chr6 114574312 114574337 -74705217 + (A)n Simple_repeat Simple_repeat 1 25 0 665 121 10 0 chr6 114575040 114575139 -74704415 - MLT1B LTR MaLR -40 350 251 350 266 0 39 chr6 114575388 114575516 -74704038 + L1MC5 LINE L1 7784 7906 -55 2125 106 0 0 chr6 114576230 114576549 -74703005 - AluSx SINE Alu 0 319 1 1556 180 59 57 chr6 114576765 114577153 -74702401 + MLT1B LTR MaLR 2 390 0 754 297 97 21 chr6 114578690 114579030 -74700524 + L2 LINE L2 2948 3313 0 772 191 27 37 chr6 114579355 114579543 -74700011 + MER20 DNA MER1_type 8 193 -26 22 56 0 0 chr6 114579722 114579758 -74699796 + AT_rich Low_complexity Low_complexity 1 36 0 304 225 117 17 chr6 114579775 114579895 -74699659 + L1MEd LINE L1 904 1035 -5084 231 249 137 52 chr6 114579953 114580319 -74699235 + L1MEd LINE L1 2114 2510 -3619 869 113 0 0 chr6 114580534 114580658 -74698896 + AluSg/x SINE Alu 172 295 -15 222 238 0 0 chr6 114580923 114580965 -74698589 - L2 LINE L2 -565 2749 2708 445 257 39 121 chr6 114581146 114581352 -74698202 - MER5A DNA MER1_type 0 189 1 2341 105 0 0 chr6 114581368 114581673 -74697881 - AluSg SINE Alu -5 305 1 1545 152 27 11 chr6 114581766 114582029 -74697525 + AluJb SINE Alu 1 267 -45 260 112 157 124 chr6 114582068 114582157 -74697397 - MER105 DNA DNA -1 203 112 673 241 27 0 chr6 114582760 114582947 -74696607 + L1PBa LINE L1 6 197 -6666 * 7177 119 38 5 chr6 114582944 114584191 -74695363 + L1PBa LINE L1 1392 2679 -4184 227 237 68 0 chr6 114584363 114584422 -74695132 - L2 LINE L2 -2 3270 3208 2526 70 0 0 chr6 114584465 114584766 -74694788 + AluSc SINE Alu 1 301 -8 329 337 76 53 chr6 114584864 114585128 -74694426 - L2 LINE L2 0 3272 3003 294 316 217 25 chr6 114585321 114585755 -74693799 - L2 LINE L2 -599 2715 2199 21 71 0 0 chr6 114586987 114587029 -74692525 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr6 114588751 114588772 -74690782 + AT_rich Low_complexity Low_complexity 1 21 0 3843 162 41 40 chr6 114589023 114589796 -74689758 - MER21B LTR ERV1 -1 862 89 430 125 0 0 chr6 114589804 114589868 -74689686 + AluJ/FLAM SINE Alu 21 84 -228 22 0 0 0 chr6 114589939 114589961 -74689593 + AT_rich Low_complexity Low_complexity 1 22 0 284 313 111 20 chr6 114590241 114590340 -74689214 + L2 LINE L2 3147 3254 -18 456 313 182 30 chr6 114592384 114592857 -74686697 + L3 LINE CR1 1020 1564 -13 201 250 20 90 chr6 114592870 114592970 -74686584 - L2 LINE L2 -93 3220 3128 1161 188 106 0 chr6 114593063 114593356 -74686198 + MER33 DNA MER1_type 1 324 0 1666 176 17 35 chr6 114593371 114593717 -74685837 - MER2 DNA MER2_type 0 344 5 925 213 6 0 chr6 114593780 114593949 -74685605 - FAM SINE Alu -5 170 1 1636 196 0 20 chr6 114594305 114594611 -74684943 + AluJo SINE Alu 1 300 -12 1750 160 10 52 chr6 114594641 114594947 -74684607 + AluJb SINE Alu 1 293 -19 246 341 8 32 chr6 114595267 114595393 -74684161 - MLT1L LTR MaLR -134 481 359 330 26 0 0 chr6 114596681 114596720 -74682834 + (TA)n Simple_repeat Simple_repeat 2 40 0 535 319 140 24 chr6 114596720 114597697 -74681857 + HAL1 LINE L1 832 1922 -585 2437 114 8 3 chr6 114597753 114598130 -74681424 + L1PB1 LINE L1 5772 6150 -1 21 36 0 0 chr6 114598134 114598162 -74681392 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 114598993 114599014 -74680540 + AT_rich Low_complexity Low_complexity 1 21 0 195 139 0 0 chr6 114599744 114599780 -74679774 + (CTG)n Simple_repeat Simple_repeat 2 37 0 445 355 29 0 chr6 114601355 114601527 -74678027 - MLT1J LTR MaLR -316 195 19 28 0 0 0 chr6 114601720 114601748 -74677806 + AT_rich Low_complexity Low_complexity 1 28 0 309 204 34 57 chr6 114602256 114602344 -74677210 + L2 LINE L2 3222 3307 -6 1139 165 56 5 chr6 114602481 114602769 -74676785 + MER61C LTR ERV1 1 395 -39 280 244 44 22 chr6 114602787 114602877 -74676677 + MER61B-int LTR ERV1 1 92 -5125 267 31 0 0 chr6 114602924 114602956 -74676598 + (TCCCC)n Simple_repeat Simple_repeat 4 35 0 1612 154 36 75 chr6 114603220 114603636 -74675918 + MER61B-int LTR ERV1 356 755 -4462 1814 27 0 0 chr6 114603636 114603860 -74675694 - L1PA2 LINE L1 -249 5906 5683 2139 20 0 0 chr6 114603860 114604101 -74675453 + L1PA2 LINE L1 5909 6155 0 583 177 0 0 chr6 114604139 114604252 -74675302 + MER61B-int LTR ERV1 743 855 -4362 * 25858 99 37 25 chr6 114604237 114604426 -74675128 + MER61B-int LTR ERV1 958 1143 -4074 1839 117 0 0 chr6 114604426 114604696 -74674858 - AluSg SINE Alu 0 309 40 25858 99 37 25 chr6 114604696 114605164 -74674390 + MER61B-int LTR ERV1 1143 1604 -3613 2144 127 3 10 chr6 114605164 114605464 -74674090 + AluSp SINE Alu 1 298 -15 25858 99 37 25 chr6 114605464 114606931 -74672623 + MER61B-int LTR ERV1 1604 3052 -2165 2138 117 21 0 chr6 114606931 114607222 -74672332 - AluSx SINE Alu -15 297 1 25858 99 37 25 chr6 114607222 114608332 -74671222 + MER61B-int LTR ERV1 3052 4260 -957 2589 59 0 0 chr6 114608332 114608635 -74670919 + AluY SINE Alu 1 303 -8 25858 99 37 25 chr6 114608635 114609605 -74669949 + MER61B-int LTR ERV1 4260 5217 0 1188 176 41 21 chr6 114609605 114609911 -74669643 + MER61B LTR ERV1 1 396 -29 506 181 6 110 chr6 114609921 114610103 -74669451 - L1ME3 LINE L1 -90 6072 5910 962 250 48 22 chr6 114610512 114610824 -74668730 - MER77 LTR ERV1 -8 597 278 234 205 134 18 chr6 114610937 114611049 -74668505 - MER77 LTR ERV1 -363 242 118 221 208 21 0 chr6 114612047 114612095 -74667459 - L2 LINE L2 0 3313 3265 1909 146 0 4 chr6 114613812 114614118 -74665436 - AluSx SINE Alu 0 307 3 2323 188 24 32 chr6 114614405 114614941 -74664613 + MLT2B3 LTR ERVL 1 479 -36 334 83 17 17 chr6 114614941 114615001 -74664553 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 2323 188 24 32 chr6 114615001 114615023 -74664531 + MLT2B3 LTR ERVL 479 500 -15 267 125 0 0 chr6 114615068 114615108 -74664446 + LTR56 LTR ERV1 349 388 -57 24 32 0 0 chr6 114615108 114615139 -74664415 + AT_rich Low_complexity Low_complexity 1 31 0 204 40 0 0 chr6 114615364 114615389 -74664165 + (T)n Simple_repeat Simple_repeat 1 25 0 716 164 66 0 chr6 114615396 114615518 -74664036 - FLAM_C SINE Alu -3 130 1 293 284 172 37 chr6 114616211 114616345 -74663209 - MER5A DNA MER1_type -3 186 35 183 156 0 0 chr6 114616495 114616527 -74663027 + T-rich Low_complexity Low_complexity 1 32 0 743 276 87 17 chr6 114616634 114617083 -74662471 - MLT1C LTR MaLR 0 467 1 212 246 43 29 chr6 114617113 114617182 -74662372 - MIR SINE MIR 0 262 193 4399 74 5 3 chr6 114617404 114617986 -74661568 + L1PA7 LINE L1 5566 6148 -6 628 237 0 0 chr6 114617996 114618114 -74661440 + FLAM_A SINE Alu 1 118 -15 364 323 174 12 chr6 114618232 114618399 -74661155 - MIR SINE MIR -56 206 13 36176 81 9 7 chr6 114618405 114624544 -74655010 - L1PA4 LINE L1 -1 6154 12 372 229 119 8 chr6 114624761 114624879 -74654675 + LTR16A1 LTR ERVL 274 404 -53 431 77 0 15 chr6 114625057 114625122 -74654432 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 428 274 57 0 chr6 114625165 114625289 -74654265 + L2 LINE L2 2196 2326 -988 230 211 113 0 chr6 114625307 114625378 -74654176 - MLT1J2 LTR MaLR -28 422 344 291 196 120 98 chr6 114625599 114625732 -74653822 + L2 LINE L2 2403 2538 -776 644 259 67 55 chr6 114625732 114626076 -74653478 + L1MC4 LINE L1 7573 7920 -122 233 157 48 20 chr6 114626078 114626225 -74653329 + (TA)n Simple_repeat Simple_repeat 2 152 0 926 237 67 25 chr6 114626378 114626661 -74652893 + L2 LINE L2 2640 2934 -380 22 35 0 0 chr6 114627825 114627854 -74651700 + AT_rich Low_complexity Low_complexity 1 29 0 31 76 0 0 chr6 114628168 114628234 -74651320 + AT_rich Low_complexity Low_complexity 1 66 0 28 29 0 0 chr6 114628326 114628361 -74651193 + AT_rich Low_complexity Low_complexity 1 35 0 186 43 0 0 chr6 114628775 114628798 -74650756 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1900 176 7 3 chr6 114629407 114629708 -74649846 - AluJo SINE Alu -10 302 1 370 267 127 0 chr6 114629725 114629875 -74649679 + MIR SINE MIR 84 252 -10 244 291 93 0 chr6 114630408 114630494 -74649060 - L2 LINE L2 -4 3268 3175 819 234 109 0 chr6 114630797 114630998 -74648556 + MER58A DNA MER1_type 2 224 0 232 270 38 93 chr6 114631135 114631424 -74648130 - L1ME4a LINE L1 -13 6108 5836 23 0 0 0 chr6 114631482 114631505 -74648049 + AT_rich Low_complexity Low_complexity 1 23 0 5863 103 13 23 chr6 114631738 114632851 -74646703 + L1PA14 LINE L1 5044 6150 -11 446 301 42 12 chr6 114632900 114633045 -74646509 + MLT1J2 LTR MaLR 5 150 -259 1934 219 89 41 chr6 114633045 114633562 -74645992 - MLT1F LTR MaLR 0 542 1 446 301 42 12 chr6 114633562 114633581 -74645973 + MLT1J2 LTR MaLR 150 167 -242 486 162 0 0 chr6 114634375 114634449 -74645105 + LTR40a LTR ERVL 445 518 -1 1245 233 34 3 chr6 114634455 114634777 -74644777 + L1ME3 LINE L1 3350 3681 -2465 988 203 100 32 chr6 114634886 114635137 -74644417 + AluJb SINE Alu 37 304 -8 722 226 20 40 chr6 114635137 114635385 -74644169 + L1ME3 LINE L1 3676 3918 -2228 * 2389 209 54 5 chr6 114635381 114635965 -74643589 + L1ME3 LINE L1 5045 5671 -495 951 176 30 0 chr6 114635965 114636130 -74643424 + FAM SINE Alu 1 170 -5 2389 209 54 5 chr6 114636130 114636279 -74643275 + L1ME3 LINE L1 5671 5811 -355 894 67 0 37 chr6 114636902 114637036 -74642518 - L1PA14 LINE L1 -1 6160 6032 4571 100 5 0 chr6 114637037 114637678 -74641876 - L1PA14 LINE L1 -53 6108 5465 225 132 0 0 chr6 114638528 114638566 -74640988 + (TTCTC)n Simple_repeat Simple_repeat 5 42 0 670 223 22 0 chr6 114638566 114638705 -74640849 - FLAM_A SINE Alu 0 142 1 1946 176 28 76 chr6 114638706 114639166 -74640388 - MLT1D LTR MaLR -60 445 8 5475 130 29 9 chr6 114639996 114641179 -74638375 - L1PA15 LINE L1 0 6868 5652 422 141 0 0 chr6 114641180 114641251 -74638303 - L1PA15 LINE L1 -2111 4738 4668 * 5251 237 29 16 chr6 114641249 114642949 -74636605 - L1PA15 LINE L1 -3305 3544 1830 1823 65 4 0 chr6 114643086 114643316 -74636238 + HERVK22 LTR ERVK 4658 4888 -1949 * 13271 80 1 3 chr6 114643314 114645034 -74634520 + HERVK22 LTR ERVK 5123 6837 0 2376 167 58 44 chr6 114645034 114645536 -74634018 + LTR22 LTR ERVK 1 509 0 1391 171 91 70 chr6 114646190 114646270 -74633284 + MLT2B2 LTR ERVL 1 78 -437 1996 127 4 0 chr6 114646270 114646569 -74632985 + AluSx SINE Alu 8 307 0 1391 171 91 70 chr6 114646569 114646943 -74632611 + MLT2B2 LTR ERVL 78 515 0 27 0 0 0 chr6 114647220 114647247 -74632307 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr6 114647628 114647659 -74631895 + AT_rich Low_complexity Low_complexity 1 31 0 516 187 6 110 chr6 114648064 114648246 -74631308 + L1ME3 LINE L1 5910 6072 -90 1279 179 43 19 chr6 114648256 114648562 -74630992 - MER61B LTR ERV1 -28 396 1 3946 133 18 12 chr6 114648562 114649532 -74630022 - MER61B-int LTR ERV1 0 5217 4188 2493 70 3 0 chr6 114649532 114649832 -74629722 - AluY SINE Alu -10 301 1 489 287 81 32 chr6 114649836 114650146 -74629408 - HAL1 LINE L1 -917 1590 1266 589 233 73 16 chr6 114650358 114650663 -74628891 + HAL1b LINE L1 746 6311 -1 479 202 26 0 chr6 114651125 114651239 -74628315 - L1MB2 LINE L1 0 6171 6055 306 167 37 0 chr6 114651270 114651324 -74628230 - MER66B LTR ERV1 -144 342 287 1073 175 10 0 chr6 114651327 114651521 -74628033 - L1MB2 LINE L1 -117 6054 5859 225 224 0 0 chr6 114651776 114651834 -74627720 + CT-rich Low_complexity Low_complexity 3 60 0 575 286 71 51 chr6 114651911 114651991 -74627563 - HAL1 LINE L1 -839 1668 1591 1780 124 46 0 chr6 114651991 114652274 -74627280 - AluY SINE Alu -15 296 1 575 286 71 51 chr6 114652274 114652588 -74626966 - HAL1 LINE L1 -916 1591 1266 607 229 71 16 chr6 114652800 114653092 -74626462 + HAL1b LINE L1 746 6294 -3 2418 60 0 10 chr6 114653466 114653766 -74625788 + AluY SINE Alu 1 297 -14 27 0 0 0 chr6 114653807 114653834 -74625720 + AT_rich Low_complexity Low_complexity 1 27 0 191 318 81 54 chr6 114654771 114654919 -74624635 - L2 LINE L2 -4 3309 3158 1938 155 0 0 chr6 114656119 114656410 -74623144 + AluJb SINE Alu 1 291 -21 13930 114 4 16 chr6 114656538 114659365 -74620189 - L1PA6 LINE L1 0 6154 3341 21 36 0 0 chr6 114659470 114659498 -74620056 + AT_rich Low_complexity Low_complexity 1 28 0 575 310 70 11 chr6 114659757 114660112 -74619442 - L1MB2 LINE L1 -342 5779 5404 641 212 24 18 chr6 114660115 114660285 -74619269 - L1MB2 LINE L1 -807 5339 5169 439 188 18 0 chr6 114660344 114660456 -74619098 + GA-rich Low_complexity Low_complexity 2 115 0 2167 196 76 27 chr6 114660907 114661392 -74618162 + LTR22 LTR ERVK 1 509 0 37419 74 14 3 chr6 114661392 114662083 -74617471 + HERVK22 LTR ERVK 1 683 -6154 2418 65 0 3 chr6 114662083 114662376 -74617178 - AluY SINE Alu -19 292 1 37419 74 14 3 chr6 114662376 114666519 -74613035 + HERVK22 LTR ERVK 683 4888 -1949 4295 87 2 0 chr6 114666517 114667082 -74612472 + HERVK22 LTR ERVK 5123 5688 -1149 * 380 240 19 19 chr6 114667894 114667998 -74611556 + U13 snRNA snRNA 1 104 0 281 114 26 0 chr6 114668269 114668329 -74611225 - L1MC1 LINE L1 -8 6336 6271 310 321 38 44 chr6 114668628 114668787 -74610767 + MER110-int LTR ERV1 152 309 -4338 653 360 26 40 chr6 114668987 114669481 -74610073 + MER110-int LTR ERV1 556 1042 -3605 781 277 37 100 chr6 114669550 114670101 -74609453 + MER110-int LTR ERV1 1059 3840 -2961 3713 142 42 3 chr6 114670159 114670799 -74608755 - L1MB4 LINE L1 -69 6111 5447 1652 206 21 34 chr6 114670834 114671212 -74608342 + MLT1A2 LTR MaLR 1 373 -1 1042 296 28 46 chr6 114671224 114671683 -74607871 + MER110-int LTR ERV1 1572 2022 -2625 656 333 45 9 chr6 114671877 114672213 -74607341 + MER110-int LTR ERV1 2242 2589 -2058 1557 282 82 61 chr6 114672373 114673366 -74606188 + MER110-int LTR ERV1 3621 4633 -14 232 232 18 18 chr6 114673512 114673568 -74605986 + MER110 LTR ERV1 107 162 -329 987 283 16 13 chr6 114673657 114673964 -74605590 + MER110 LTR ERV1 167 474 -17 26 64 0 0 chr6 114674091 114674138 -74605416 + AT_rich Low_complexity Low_complexity 1 47 0 23 78 0 0 chr6 114676294 114676345 -74603209 + AT_rich Low_complexity Low_complexity 1 51 0 660 215 55 43 chr6 114676873 114677036 -74602518 + MIR SINE MIR 24 188 -74 845 249 52 0 chr6 114677872 114678085 -74601469 - MER115 DNA AcHobo -3 690 467 4519 185 16 1 chr6 114678570 114679452 -74600102 + L1PA11 LINE L1 2306 3200 -2946 * 11274 121 9 29 chr6 114679447 114681852 -74597702 + L1PA6 LINE L1 1 2390 -3756 5122 48 0 20 chr6 114681852 114682511 -74597043 + L1PA5 LINE L1 5507 6154 0 * 22527 64 19 1 chr6 114682494 114686257 -74593297 + L1PA6 LINE L1 2367 6150 -4 8304 169 8 2 chr6 114686272 114688582 -74590972 + L1PA11 LINE L1 3839 6170 -4 25 31 0 0 chr6 114689711 114689743 -74589811 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 114690703 114690725 -74588829 + AT_rich Low_complexity Low_complexity 1 22 0 527 269 75 21 chr6 114690858 114691044 -74588510 - L2 LINE L2 0 3313 3118 1929 240 86 77 chr6 114691309 114692177 -74587377 - L1ME3A LINE L1 -5 6234 5359 2010 88 3 0 chr6 114692190 114692474 -74587080 - L1PA14 LINE L1 0 6161 5877 563 296 79 64 chr6 114692484 114692889 -74586665 - L1ME3A LINE L1 -848 5367 4957 482 238 149 72 chr6 114692966 114693491 -74586063 - L1ME3A LINE L1 -1278 4937 4373 1100 146 0 0 chr6 114693500 114693658 -74585896 - AluSg/x SINE Alu -22 290 133 1713 184 0 7 chr6 114693659 114693968 -74585586 - AluSx SINE Alu -5 307 1 248 240 53 0 chr6 114693969 114694044 -74585510 - L1ME3A LINE L1 -1905 4310 4232 1901 149 46 27 chr6 114694093 114694461 -74585093 - THE1C LTR MaLR 0 375 1 762 251 27 27 chr6 114694572 114694835 -74584719 - L1ME3A LINE L1 -2222 3993 3731 406 221 6 88 chr6 114694830 114695011 -74584543 - L1ME3A LINE L1 -3909 2306 2181 * 37 39 0 0 chr6 114695047 114695098 -74584456 + AT_rich Low_complexity Low_complexity 1 51 0 1835 148 10 10 chr6 114695098 114695388 -74584166 - AluSx SINE Alu -22 290 1 320 326 65 37 chr6 114695396 114695542 -74584012 - L1ME3A LINE L1 -5465 931 776 2303 89 0 0 chr6 114695542 114695833 -74583721 + AluSc SINE Alu 1 291 -18 320 326 65 37 chr6 114695833 114695901 -74583653 - L1ME3A LINE L1 -5620 776 711 2486 83 3 0 chr6 114696136 114696448 -74583106 - AluSp SINE Alu 0 313 1 1273 137 19 0 chr6 114696701 114696906 -74582648 + L1PA14 LINE L1 5951 6159 -2 302 303 28 14 chr6 114696962 114697104 -74582450 - L1ME3A LINE L1 -5923 282 139 251 347 28 0 chr6 114698198 114698270 -74581284 - L2 LINE L2 -9 3263 3190 1103 217 19 0 chr6 114698297 114698509 -74581045 - MER20 DNA MER1_type -3 216 1 418 291 155 28 chr6 114698757 114698970 -74580584 + MIR SINE MIR 23 262 0 1431 174 62 0 chr6 114700341 114700646 -74578908 + MER33 DNA MER1_type 1 324 0 835 342 50 16 chr6 114700909 114701485 -74578069 - L1MEc LINE L1 -5764 632 37 322 317 99 25 chr6 114701485 114701687 -74577867 - L1MEc LINE L1 -4247 2474 2258 543 268 50 29 chr6 114701772 114702117 -74577437 - L1MEc LINE L1 -861 2040 1835 * 4600 80 2 2 chr6 114702109 114702745 -74576809 - L1PA7 LINE L1 -894 5252 4617 6791 62 9 2 chr6 114702745 114703634 -74575920 + L1PA7 LINE L1 5260 6154 0 433 287 56 25 chr6 114703653 114703977 -74575577 - L1MEc LINE L1 -4786 1754 1421 672 328 108 46 chr6 114704647 114705019 -74574535 + L2 LINE L2 2861 3255 -17 225 280 45 38 chr6 114705082 114705214 -74574340 - MER103 DNA DNA -1 165 33 227 264 186 52 chr6 114706337 114706530 -74573024 + L2 LINE L2 2133 2351 -963 307 234 52 13 chr6 114706875 114706952 -74572602 - L2 LINE L2 -167 3105 3026 414 265 201 25 chr6 114707509 114707713 -74571841 + L2 LINE L2 3038 3277 -36 367 247 27 62 chr6 114708390 114708536 -74571018 + MIR SINE MIR 102 242 -20 200 286 52 26 chr6 114708585 114708662 -74570892 - MIR SINE MIR -164 98 20 1565 231 65 20 chr6 114709031 114709429 -74570125 + LTR52 LTR ERVL 1 416 -5 268 298 76 28 chr6 114709446 114709703 -74569851 + MLT1K LTR MaLR 290 582 -6 216 0 0 0 chr6 114709832 114709856 -74569698 + (T)n Simple_repeat Simple_repeat 1 24 0 309 243 83 127 chr6 114710797 114710978 -74568576 - MIR3 SINE MIR -5 203 31 * 322 299 41 0 chr6 114710971 114711068 -74568486 + MIR3 SINE MIR 91 191 -17 22 0 0 0 chr6 114711569 114711591 -74567963 + AT_rich Low_complexity Low_complexity 1 22 0 408 157 120 56 chr6 114711963 114712071 -74567483 - MLT1J2 LTR MaLR -7 439 325 1905 128 49 7 chr6 114712128 114712416 -74567138 - AluSx SINE Alu -12 300 1 329 206 44 0 chr6 114712557 114712625 -74566929 - MLT1J1 LTR MaLR -368 78 8 191 346 185 19 chr6 114712722 114712884 -74566670 - MER5A DNA MER1_type 0 189 1 367 277 93 2 chr6 114712896 114713025 -74566529 - MIR SINE MIR -87 175 37 23 68 0 0 chr6 114713103 114713147 -74566407 + AT_rich Low_complexity Low_complexity 1 44 0 3884 163 24 20 chr6 114713585 114714369 -74565185 + L1 LINE L1 4344 5130 -1016 * 8106 171 26 3 chr6 114714367 114715924 -74563630 - L1M LINE L1 -755 5391 3815 425 274 29 57 chr6 114715926 114716101 -74563453 - MLT-int LTR MaLR -751 984 815 1621 109 12 20 chr6 114716200 114716448 -74563106 + L1P4 LINE L1 5393 5638 -523 767 289 35 36 chr6 114716449 114716751 -74562803 + MLT-int LTR MaLR 929 1323 -368 2413 191 15 4 chr6 114716835 114717297 -74562257 + MLT1C LTR MaLR 1 467 0 282 350 50 31 chr6 114717383 114717548 -74562006 + MIR SINE MIR 25 191 -59 1958 185 45 3 chr6 114717599 114717977 -74561577 + MSTD LTR MaLR 3 396 0 237 33 0 0 chr6 114718202 114718232 -74561322 + (TG)n Simple_repeat Simple_repeat 2 31 0 740 255 53 65 chr6 114720178 114720425 -74559129 + MIR SINE MIR 1 244 -18 1737 162 129 6 chr6 114721401 114721734 -74557820 + MSTA LTR MaLR 1 374 -54 1985 192 91 81 chr6 114721756 114722364 -74557190 + MLT1E3 LTR MaLR 11 624 0 278 250 0 16 chr6 114722736 114722800 -74556754 + LTR16C LTR ERVL 427 489 -2 186 43 0 0 chr6 114723880 114723903 -74555651 + (T)n Simple_repeat Simple_repeat 1 23 0 708 183 0 44 chr6 114725606 114725743 -74553811 + FLAM_C SINE Alu 1 131 -2 266 0 0 29 chr6 114725755 114725790 -74553764 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 519 354 49 40 chr6 114725937 114726265 -74553289 - L2 LINE L2 -8 3264 2934 355 287 96 43 chr6 114726489 114726677 -74552877 + MIR SINE MIR 21 218 -44 533 281 83 38 chr6 114726919 114727232 -74552322 - MLT1H LTR MaLR 0 549 223 422 254 0 35 chr6 114727217 114727331 -74552223 - MLT1H LTR MaLR -427 122 13 * 707 269 47 10 chr6 114727841 114728034 -74551520 + LTR33 LTR ERVL 1 200 -321 180 0 0 0 chr6 114728035 114728055 -74551499 + (CAGC)n Simple_repeat Simple_repeat 1 20 0 281 321 27 27 chr6 114728162 114728274 -74551280 - MIR SINE MIR -59 203 92 1376 230 28 0 chr6 114730311 114730594 -74548960 + MLT1H LTR MaLR 1 291 -258 962 276 46 86 chr6 114730701 114731120 -74548434 + MLT1I LTR MaLR 1 402 -7 1518 239 81 5 chr6 114731203 114731634 -74547920 + L1ME1 LINE L1 5527 5990 -176 238 243 54 0 chr6 114731672 114731746 -74547808 + L1MB8 LINE L1 6100 6177 -1 201 358 25 25 chr6 114731763 114731844 -74547710 + L2 LINE L2 2260 2340 -974 6063 203 36 107 chr6 114732775 114733793 -74545761 + L1M2b LINE L1 1 806 -6403 1802 156 52 25 chr6 114733793 114734158 -74545396 + THE1C LTR MaLR 1 375 0 6063 203 36 107 chr6 114734158 114735380 -74544174 + L1M2b LINE L1 806 2113 -5096 11559 129 26 18 chr6 114735425 114738691 -74540863 + MER61C-int LTR ERV1 407 4102 -1115 4680 39 3 2 chr6 114738726 114739291 -74540263 - L1PA5 LINE L1 -8 6146 5581 21155 73 13 0 chr6 114739291 114742215 -74537339 - L1P LINE L1 -3176 2970 11 6352 139 42 10 chr6 114742219 114742283 -74537271 + MER61C-int LTR ERV1 4082 4142 -1075 351 0 0 0 chr6 114742283 114742322 -74537232 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6352 139 42 10 chr6 114742322 114743358 -74536196 + MER61C-int LTR ERV1 4142 5217 0 2555 101 46 26 chr6 114743358 114743774 -74535780 + MER61C LTR ERV1 1 424 -10 966 253 121 15 chr6 114744544 114744999 -74534555 - L1MC4a LINE L1 -1634 6174 5672 2227 101 3 3 chr6 114745582 114745880 -74533674 + AluSx SINE Alu 1 298 -14 1236 146 41 44 chr6 114746056 114746426 -74533128 - MER44D DNA MER2_type 0 605 1 181 87 22 43 chr6 114746658 114746704 -74532850 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 189 171 0 0 chr6 114746962 114746997 -74532557 + CT-rich Low_complexity Low_complexity 1 35 0 294 239 15 0 chr6 114746998 114747065 -74532489 - L2 LINE L2 -1 3312 3245 1032 144 0 61 chr6 114747271 114747452 -74532102 + AluJo SINE Alu 101 270 -42 1090 245 31 13 chr6 114748611 114748929 -74530625 - L1M4 LINE L1 -2064 4082 3759 331 296 128 14 chr6 114748934 114749228 -74530326 - L1M4 LINE L1 -3404 2742 2396 1989 108 0 0 chr6 114749228 114749486 -74530068 + AluSx SINE Alu 40 297 -15 331 296 128 14 chr6 114749486 114749559 -74529995 - L1M4 LINE L1 -3750 2396 2333 27 29 0 0 chr6 114749609 114749643 -74529911 + AT_rich Low_complexity Low_complexity 1 34 0 2596 226 91 43 chr6 114749643 114751557 -74527997 - L1ME1 LINE L1 -9 6226 4207 389 132 0 26 chr6 114751816 114751892 -74527662 + (TTCTCC)n Simple_repeat Simple_repeat 3 76 0 22 35 0 0 chr6 114752369 114752398 -74527156 + AT_rich Low_complexity Low_complexity 1 29 0 2385 61 24 0 chr6 114752662 114752955 -74526599 - AluY SINE Alu -10 301 2 241 255 171 23 chr6 114753677 114753893 -74525661 + HAL1 LINE L1 2057 2304 -203 210 218 0 73 chr6 114753990 114754045 -74525509 + L2 LINE L2 3215 3265 -7 249 222 19 0 chr6 114756043 114756097 -74523457 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 21 0 0 0 chr6 114756131 114756152 -74523402 + AT_rich Low_complexity Low_complexity 1 21 0 771 176 9 109 chr6 114756739 114756949 -74522605 - MSTA LTR MaLR -50 378 190 6839 58 0 0 chr6 114756951 114758459 -74521095 - L1PA7 LINE L1 -12 6142 4630 28403 111 12 23 chr6 114758662 114758996 -74520558 - L1PA7 LINE L1 0 6469 6133 1952 110 88 0 chr6 114758996 114759269 -74520285 - AluY SINE Alu -14 297 1 28403 111 12 23 chr6 114759269 114764962 -74514592 - L1PA7 LINE L1 -336 6133 416 334 229 0 0 chr6 114814981 114815051 -74464503 - LTR33 LTR ERVL -427 94 25 514 221 66 0 chr6 114815071 114815193 -74464361 - MIR SINE MIR -69 193 64 740 247 101 39 chr6 114815204 114815592 -74463962 - L1ME1 LINE L1 -3085 3130 2719 330 247 87 13 chr6 114815790 114815940 -74463614 - L1ME1 LINE L1 -3756 2459 2299 504 323 102 20 chr6 114815984 114816377 -74463177 - L1ME1 LINE L1 -4096 2300 1876 23 33 0 0 chr6 114816386 114816416 -74463138 + AT_rich Low_complexity Low_complexity 1 30 0 359 259 82 82 chr6 114816455 114816687 -74462867 - L1ME1 LINE L1 -5566 639 408 505 302 70 9 chr6 114816735 114817081 -74462473 - L1MCc LINE L1 -899 2403 2106 601 280 184 51 chr6 114817123 114817824 -74461730 - L1MCc LINE L1 -5004 1927 1134 22 35 0 0 chr6 114818531 114818560 -74460994 + AT_rich Low_complexity Low_complexity 1 29 0 207 310 170 0 chr6 114819171 114819271 -74460283 - L2 LINE L2 0 3313 3197 382 282 0 0 chr6 114819409 114819480 -74460074 - MER58 DNA MER1_type -315 71 1 22 80 0 0 chr6 114820210 114820260 -74459294 + AT_rich Low_complexity Low_complexity 1 50 0 461 255 84 21 chr6 114820511 114820719 -74458835 - MLT1H LTR MaLR 0 549 333 266 295 147 16 chr6 114821230 114821359 -74458195 + MIR SINE MIR 11 156 -106 204 301 236 16 chr6 114821789 114821912 -74457642 + MIR3 SINE MIR 2 151 -57 1399 261 42 52 chr6 114822851 114823596 -74455958 - L2 LINE L2 -80 3233 2499 1657 185 49 0 chr6 114824066 114824352 -74455202 + AluJb SINE Alu 2 301 -11 240 94 0 0 chr6 114825273 114825305 -74454249 + MLT1A2 LTR MaLR 1 32 -342 1599 168 41 47 chr6 114825309 114825673 -74453881 + MLT1A1 LTR MaLR 4 365 0 22 35 0 0 chr6 114825674 114825703 -74453851 + AT_rich Low_complexity Low_complexity 1 29 0 2053 105 0 11 chr6 114825915 114826220 -74453334 - AluSg SINE Alu 0 302 1 344 287 37 0 chr6 114826416 114826524 -74453030 + MIR SINE MIR 129 240 -22 308 354 51 0 chr6 114827107 114827265 -74452289 + MIR SINE MIR 20 185 -77 1148 232 53 43 chr6 114828599 114828966 -74450588 - L1MCc LINE L1 -5708 714 3 2444 236 73 35 chr6 114828973 114830186 -74449368 + L1ME1 LINE L1 4901 6161 -5 26 30 0 0 chr6 114830235 114830268 -74449286 + AT_rich Low_complexity Low_complexity 1 33 0 1528 195 174 5 chr6 114831062 114831436 -74448118 - MLT1C LTR MaLR -30 437 1 21 36 0 0 chr6 114831624 114831652 -74447902 + AT_rich Low_complexity Low_complexity 1 28 0 1987 108 7 14 chr6 114831656 114831953 -74447601 - AluSg SINE Alu -15 295 1 184 333 77 0 chr6 114833480 114833558 -74445996 + MIR SINE MIR 30 113 -95 190 338 45 53 chr6 114833760 114833893 -74445661 + L2 LINE L2 3180 3311 -2 5660 119 2 0 chr6 114834736 114836095 -74443459 - L1PA15 LINE L1 -3 6162 4783 552 302 34 19 chr6 114836573 114836778 -74442776 - LTR33 LTR ERVL -9 512 305 641 265 58 0 chr6 114836839 114837028 -74442526 - LTR33 LTR ERVL -321 200 1 447 276 75 51 chr6 114837646 114837832 -74441722 - MIR SINE MIR -23 239 45 1946 113 36 4 chr6 114837832 114838135 -74441419 + AluSq SINE Alu 1 312 0 447 276 75 51 chr6 114838135 114838161 -74441393 - MIR SINE MIR -217 45 21 188 345 18 0 chr6 114838259 114838314 -74441240 + MIR SINE MIR 37 92 -116 2895 13 0 0 chr6 114840049 114840367 -74439187 + AluYb8 SINE Alu 1 318 0 282 339 37 9 chr6 114840924 114841033 -74438521 + MIR3 SINE MIR 58 169 -39 313 325 25 51 chr6 114841403 114841560 -74437994 + L2 LINE L2 3118 3270 -2 272 336 20 55 chr6 114841889 114842035 -74437519 - MIR SINE MIR -57 205 65 394 352 85 32 chr6 114843178 114843579 -74435975 - L2 LINE L2 -343 2971 2550 412 348 15 113 chr6 114843609 114844089 -74435465 - L2 LINE L2 -32 3240 2808 534 86 0 0 chr6 114844179 114844260 -74435294 + L1MA4A LINE L1 5758 5838 -465 42116 40 23 1 chr6 114844274 114850291 -74429263 - L1PA3 LINE L1 -4 6151 2 2741 110 50 7 chr6 114850293 114850748 -74428806 + L1MA4A LINE L1 5824 6298 -5 934 290 185 60 chr6 114850771 114851650 -74427904 - L2 LINE L2 -610 2704 1716 595 320 18 18 chr6 114851944 114852169 -74427385 - MIR SINE MIR -36 226 2 624 251 60 74 chr6 114852596 114853097 -74426457 - L1ME4a LINE L1 -11 6110 5617 259 260 52 0 chr6 114853138 114853215 -74426339 + MIR SINE MIR 182 262 0 646 275 77 4 chr6 114853360 114853593 -74425961 - MIR SINE MIR 0 262 13 214 259 0 37 chr6 114856023 114856077 -74423477 - L2 LINE L2 0 3313 3262 213 108 0 0 chr6 114856351 114856388 -74423166 + (TC)n Simple_repeat Simple_repeat 1 37 0 21 89 0 0 chr6 114856480 114856536 -74423018 + AT_rich Low_complexity Low_complexity 1 56 0 388 330 0 0 chr6 114856717 114856808 -74422746 - MIR SINE MIR -57 151 61 864 279 20 12 chr6 114857968 114858219 -74421335 - MIR SINE MIR -2 260 8 380 259 19 19 chr6 114858396 114858504 -74421050 + MER5A DNA MER1_type 2 109 -80 262 265 169 0 chr6 114858731 114858814 -74420740 - MIR SINE MIR -68 140 44 257 423 34 6 chr6 114858860 114859035 -74420519 + MIR3 SINE MIR 16 195 -13 1033 218 0 0 chr6 114859066 114859286 -74420268 - AluJo SINE Alu 0 309 90 34 42 0 0 chr6 114859289 114859337 -74420217 + AT_rich Low_complexity Low_complexity 1 48 0 4163 130 42 49 chr6 114859735 114860526 -74419028 + LTR1 LTR ERV1 1 785 0 1383 239 70 12 chr6 114860648 114861113 -74418441 + MLT1E LTR MaLR 56 593 0 413 122 0 27 chr6 114861463 114861537 -74418017 - L1 LINE L1 -920 6645 6574 1998 95 79 0 chr6 114861538 114861854 -74417700 + L1MA1 LINE L1 5962 6302 0 270 275 82 29 chr6 114862154 114862325 -74417229 - L1 LINE L1 -1538 6027 5848 256 281 0 0 chr6 114862346 114862403 -74417151 + CT-rich Low_complexity Low_complexity 2 58 0 341 161 0 0 chr6 114862404 114862466 -74417088 - L1M1 LINE L1 -4606 2959 2898 1514 208 17 3 chr6 114862490 114862846 -74416708 - L1 LINE L1 -3592 3973 3613 5533 120 53 32 chr6 114862846 114863987 -74415567 - MER11A LTR ERVK 0 1266 3 2481 224 37 27 chr6 114863989 114864740 -74414814 - L1 LINE L1 -3947 3618 2860 956 212 21 0 chr6 114864733 114864922 -74414632 - L1 LINE L1 -5130 1435 1243 * 3712 259 43 21 chr6 114864925 114866268 -74413286 - L1ME LINE L1 -729 5437 4065 28 0 0 0 chr6 114866453 114866481 -74413073 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chr6 114866607 114866632 -74412922 + (TA)n Simple_repeat Simple_repeat 1 25 0 1703 129 92 0 chr6 114866633 114866905 -74412649 - AluSq SINE Alu -16 297 1 21 36 0 0 chr6 114867785 114867813 -74411741 + AT_rich Low_complexity Low_complexity 1 28 0 326 267 6 56 chr6 114867940 114868101 -74411453 - L1MC5 LINE L1 -50 7911 7759 644 267 72 35 chr6 114868162 114868480 -74411074 - L1MC5 LINE L1 -331 7630 7301 194 360 0 0 chr6 114868582 114868632 -74410922 - L2 LINE L2 -256 3057 3008 381 176 0 0 chr6 114869788 114869862 -74409692 + (TA)n Simple_repeat Simple_repeat 1 74 0 453 294 34 0 chr6 114871202 114871321 -74408233 - L2 LINE L2 0 3272 3150 476 325 45 42 chr6 114874138 114874516 -74405038 - ERVL LTR ERVL -588 5176 4798 447 35 0 0 chr6 114874714 114874771 -74404783 + (CA)n Simple_repeat Simple_repeat 2 58 0 321 328 46 52 chr6 114875365 114875539 -74404015 + MIR3 SINE MIR 2 174 -34 209 182 18 0 chr6 114876620 114876675 -74402879 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 23 0 0 0 chr6 114876940 114876963 -74402591 + AT_rich Low_complexity Low_complexity 1 23 0 777 313 12 12 chr6 114877004 114877244 -74402310 - MIR SINE MIR -8 254 15 1169 210 23 13 chr6 114877482 114877837 -74401717 + LTR54 LTR ERV1 66 510 0 555 143 18 6 chr6 114877850 114877980 -74401574 + L1 LINE L1 5236 5363 -783 1346 302 30 10 chr6 114877981 114878672 -74400882 - L1M1 LINE L1 -4469 1913 1122 211 314 20 39 chr6 114878865 114878967 -74400587 + L2 LINE L2 2140 2239 -1075 272 294 11 82 chr6 114879232 114879416 -74400138 + MER104 DNA Tc2 2 172 -8 261 308 17 33 chr6 114879962 114880082 -74399472 + MLT1I LTR MaLR 266 383 -26 451 279 76 13 chr6 114880406 114880564 -74398990 + MER5B DNA MER1_type 7 174 -4 1394 168 4 0 chr6 114880678 114880910 -74398644 - AluSx SINE Alu -21 291 59 21 36 0 0 chr6 114881167 114881195 -74398359 + AT_rich Low_complexity Low_complexity 1 28 0 2702 253 35 21 chr6 114882129 114882319 -74397235 + L1 LINE L1 3396 3582 -2564 1916 135 0 3 chr6 114882319 114882616 -74396938 - AluSg SINE Alu -14 296 1 2702 253 35 21 chr6 114882616 114883272 -74396282 + L1 LINE L1 3582 4254 -1892 4264 230 23 22 chr6 114884737 114885729 -74393825 + L1PA12 LINE L1 1012 2004 -5577 450 261 34 0 chr6 114885723 114885842 -74393712 + L1PA13 LINE L1 335 457 -6330 * 1276 162 4 31 chr6 114886025 114886284 -74393270 - L1MC1 LINE L1 -268 6065 5814 369 0 0 0 chr6 114886772 114886813 -74392741 + (CA)n Simple_repeat Simple_repeat 1 41 0 2194 241 30 20 chr6 114887631 114888321 -74391233 - L1M4 LINE L1 -1786 4360 3664 2030 227 21 43 chr6 114888332 114889018 -74390536 - L1MB4 LINE L1 -1 6179 5521 1482 172 37 4 chr6 114889295 114889599 -74389955 + AluJo SINE Alu 1 313 0 637 277 116 17 chr6 114889644 114889936 -74389618 + Charlie7 DNA MER1_type 1 321 -2291 851 229 52 105 chr6 114889944 114890546 -74389008 + Charlie7 DNA MER1_type 1438 2007 -605 23 33 0 0 chr6 114890781 114890811 -74388743 + AT_rich Low_complexity Low_complexity 1 30 0 431 214 143 8 chr6 114891038 114891164 -74388390 - L1MC1 LINE L1 -9 6324 6182 2197 90 13 3 chr6 114891167 114891466 -74388088 - AluSx SINE Alu -10 302 1 295 130 0 0 chr6 114891678 114891724 -74387830 + Alu SINE Alu 237 282 -19 306 73 0 0 chr6 114891724 114891765 -74387789 + (CATA)n Simple_repeat Simple_repeat 2 42 0 200 266 113 89 chr6 114892245 114892369 -74387185 - MER5A DNA MER1_type 0 189 63 287 305 92 18 chr6 114892384 114892548 -74387006 + MLT1I LTR MaLR 1 176 -233 241 208 0 148 chr6 114892686 114892762 -74386792 + MLT1I LTR MaLR 324 383 -26 486 322 27 0 chr6 114892762 114892945 -74386609 - MER5A DNA MER1_type -1 188 1 241 208 0 148 chr6 114892945 114892969 -74386585 + MLT1I LTR MaLR 383 409 0 22 70 0 0 chr6 114893326 114893369 -74386185 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr6 114893724 114893756 -74385798 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr6 114894206 114894255 -74385299 + AT_rich Low_complexity Low_complexity 1 49 0 4256 208 34 17 chr6 114894367 114895820 -74383734 - L1MB2 LINE L1 -2 6169 4693 180 0 0 0 chr6 114895820 114895840 -74383714 + (T)n Simple_repeat Simple_repeat 1 20 0 43152 28 21 1 chr6 114895844 114901875 -74377679 - L1HS LINE L1 0 6155 1 682 239 19 0 chr6 114901871 114902026 -74377528 - L1MB2 LINE L1 -1431 4715 4558 * 689 278 133 30 chr6 114902951 114903318 -74376236 + MLT1I LTR MaLR 5 409 0 300 229 82 41 chr6 114903320 114903442 -74376112 - L1ME4a LINE L1 -18 6103 5977 21 36 0 0 chr6 114904095 114904123 -74375431 + AT_rich Low_complexity Low_complexity 1 28 0 332 313 75 0 chr6 114904292 114904426 -74375128 + L2 LINE L2 3170 3313 0 180 245 20 61 chr6 114904867 114904916 -74374638 + L3 LINE CR1 80 126 -1451 375 314 109 29 chr6 114905151 114905390 -74374164 - MIR SINE MIR -1 261 4 1439 135 36 63 chr6 114906104 114906208 -74373346 - Tigger3b DNA MER2_type -2111 918 813 2178 125 0 0 chr6 114906208 114906503 -74373051 - AluSx SINE Alu -17 295 1 1439 135 36 63 chr6 114906503 114906731 -74372823 - Tigger3b DNA MER2_type -2216 813 595 9497 34 4 10 chr6 114906732 114908712 -74370842 - L1PA3 LINE L1 -31 6141 4237 248 117 0 144 chr6 114908712 114908823 -74370731 - Tigger3b DNA MER2_type -604 627 533 41078 64 5 4 chr6 114908839 114914761 -74364793 + L1PA5 LINE L1 13 5940 -214 2400 77 0 13 chr6 114914761 114915071 -74364483 + AluY SINE Alu 1 306 -5 41078 64 5 4 chr6 114915071 114915287 -74364267 + L1PA5 LINE L1 5940 6154 0 2858 155 54 4 chr6 114915296 114915779 -74363775 - Tigger3b DNA MER2_type -690 541 35 239 114 23 0 chr6 114915984 114916028 -74363526 + (TG)n Simple_repeat Simple_repeat 2 46 0 23 0 0 0 chr6 114917167 114917190 -74362364 + AT_rich Low_complexity Low_complexity 1 23 0 258 196 0 20 chr6 114917772 114917823 -74361731 - L2 LINE L2 -1 3271 3222 792 173 14 24 chr6 114917938 114918250 -74361304 - MSTC LTR MaLR 0 396 1 428 322 174 4 chr6 114918252 114918510 -74361044 + L2 LINE L2 2414 2715 -599 1973 121 33 0 chr6 114918510 114918807 -74360747 + AluSx SINE Alu 1 306 0 252 241 0 0 chr6 114919436 114919494 -74360060 + L1ME LINE L1 5753 5810 -311 1101 304 46 14 chr6 114919759 114920173 -74359381 - LTR16A LTR ERVL -8 442 16 23 33 0 0 chr6 114920953 114920983 -74358571 + AT_rich Low_complexity Low_complexity 1 30 0 879 197 10 36 chr6 114921034 114921227 -74358327 - MER5A DNA MER1_type -1 188 1 642 176 5 88 chr6 114923280 114923473 -74356081 + MER104 DNA MER2_type 1 177 -3 1294 190 21 119 chr6 114923751 114924130 -74355424 + MLT1A1 LTR MaLR 24 365 0 1268 205 138 3 chr6 114925505 114925802 -74353752 + MER2 DNA MER2_type 1 337 -8 183 298 88 0 chr6 114926883 114926940 -74352614 + L2 LINE L2 3210 3271 -1 185 239 65 0 chr6 114928533 114928579 -74350975 - L2 LINE L2 -94 3219 3171 234 150 0 0 chr6 114929582 114929622 -74349932 + (T)n Simple_repeat Simple_repeat 1 40 0 329 325 11 21 chr6 114929641 114929832 -74349722 + L1ME LINE L1 5618 5806 -315 479 279 73 61 chr6 114930796 114931480 -74348074 - L1MC5 LINE L1 -45 7916 7225 237 255 93 56 chr6 114931524 114931740 -74347814 - HAL1 LINE L1 -5 2502 2279 200 244 0 0 chr6 114933041 114933082 -74346472 + A-rich Low_complexity Low_complexity 1 41 0 242 319 129 0 chr6 114934011 114934127 -74345427 + L2 LINE L2 3182 3312 -1 7585 23 2 0 chr6 114934317 114935685 -74343869 - L1PA2 LINE L1 -15 6140 4772 477 256 19 6 chr6 114936555 114936715 -74342839 - Charlie7 DNA MER1_type -11 2601 2440 22 56 0 0 chr6 114936838 114936874 -74342680 + AT_rich Low_complexity Low_complexity 1 36 0 560 324 93 8 chr6 114936944 114937263 -74342291 - L2 LINE L2 -223 3049 2698 285 262 82 16 chr6 114937275 114937397 -74342157 - L2 LINE L2 -855 2459 2330 378 284 52 32 chr6 114937397 114937715 -74341839 - MLT1J2 LTR MaLR 0 450 80 702 148 8 0 chr6 114937715 114937837 -74341717 - L1MA8 LINE L1 -322 5978 5856 1384 152 54 14 chr6 114937850 114938147 -74341407 + L1MA8 LINE L1 5983 6291 0 224 340 19 58 chr6 114938206 114938362 -74341192 - L2 LINE L2 -927 2387 2238 224 327 89 36 chr6 114938384 114938552 -74341002 - L2 LINE L2 -1145 2169 1993 1746 183 3 0 chr6 114938689 114939000 -74340554 - AluSx SINE Alu 0 312 1 29 0 0 0 chr6 114939059 114939088 -74340466 + AT_rich Low_complexity Low_complexity 1 29 0 1237 250 43 3 chr6 114939313 114939637 -74339917 + MER58B DNA MER1_type 1 337 -4 189 107 0 0 chr6 114940852 114940880 -74338674 + (TA)n Simple_repeat Simple_repeat 1 28 0 212 286 71 0 chr6 114942643 114942713 -74336841 - MIR SINE MIR -79 183 109 292 359 19 0 chr6 114942713 114942816 -74336738 + LTR16C LTR ERVL 1 105 -386 253 338 57 32 chr6 114942835 114942992 -74336562 + ERVL LTR ERVL 4467 4627 -1137 5479 147 20 32 chr6 114943020 114943927 -74335627 - L1MA4 LINE L1 -7 6293 5376 2141 127 3 3 chr6 114943927 114944234 -74335320 - AluSq SINE Alu -6 307 1 5479 147 20 32 chr6 114944234 114944270 -74335284 - L1MA4 LINE L1 -924 5376 5341 2137 118 0 22 chr6 114944270 114944585 -74334969 - AluSx SINE Alu -4 308 1 5479 147 20 32 chr6 114944585 114944991 -74334563 - L1MA4 LINE L1 -959 5341 4958 820 315 52 22 chr6 114945099 114945461 -74334093 + ERVL LTR ERVL 4785 5157 -607 959 225 22 66 chr6 114945465 114945828 -74333726 - LTR2 LTR ERV1 0 449 3 309 158 0 0 chr6 114945830 114945887 -74333667 - Harlequin LTR ERV1 -1 6895 6839 * 35377 152 18 9 chr6 114945885 114951614 -74327940 - Harlequin LTR ERV1 -1575 6238 464 2220 128 60 14 chr6 114951656 114952023 -74327531 - Harlequin LTR ERV1 -6512 384 1 951 233 11 42 chr6 114952023 114952381 -74327173 - LTR2 LTR ERV1 0 449 3 288 279 40 85 chr6 114952395 114952596 -74326958 + ERVL LTR ERVL 5133 5324 -330 1118 325 64 12 chr6 114952775 114952902 -74326652 + LTR16C LTR ERVL 51 170 -321 312 48 0 0 chr6 114952902 114952944 -74326610 + (CA)n Simple_repeat Simple_repeat 1 42 0 1118 325 64 12 chr6 114952944 114953235 -74326319 + LTR16C LTR ERVL 170 491 0 21 0 0 0 chr6 114955880 114955901 -74323653 + AT_rich Low_complexity Low_complexity 1 21 0 714 327 71 40 chr6 114956118 114956567 -74322987 - L2 LINE L2 -737 2577 2115 1502 207 62 13 chr6 114956576 114956906 -74322648 + MLT1A1 LTR MaLR 11 354 -11 662 328 119 24 chr6 114956913 114957532 -74322022 - L2 LINE L2 -1194 2120 1443 2043 115 11 0 chr6 114957925 114958245 -74321309 + AluSq SINE Alu 1 323 0 430 325 94 5 chr6 114958266 114958426 -74321128 - MIR SINE MIR -11 251 68 5939 156 63 24 chr6 114958426 114959609 -74319945 + Tigger3b DNA MER2_type 2 1231 0 430 325 94 5 chr6 114959609 114959651 -74319903 - MIR SINE MIR -194 68 31 324 0 0 0 chr6 114959657 114959693 -74319861 + (TG)n Simple_repeat Simple_repeat 2 37 0 360 333 7 15 chr6 114960046 114960181 -74319373 - MIR3 SINE MIR -3 205 72 219 333 0 0 chr6 114960258 114960357 -74319197 + A-rich Low_complexity Low_complexity 1 99 0 1631 244 28 15 chr6 114962259 114962722 -74316832 - L1ME3 LINE L1 -29 6133 5665 476 179 0 0 chr6 114963053 114963148 -74316406 - MER53 DNA DNA -1 188 94 2764 236 100 13 chr6 114963647 114965033 -74314521 - L1ME1 LINE L1 -288 5878 4386 3341 253 99 32 chr6 114965126 114966653 -74312901 - L1ME1 LINE L1 -2299 3847 2211 17628 34 3 0 chr6 114966653 114969565 -74309989 - L1PA4 LINE L1 0 6155 3238 3341 253 99 32 chr6 114969565 114969604 -74309950 - L1ME1 LINE L1 -3935 2211 2176 256 191 0 0 chr6 114969606 114969653 -74309901 - L1M3 LINE L1 -474 5860 5814 2242 109 0 0 chr6 114969675 114969977 -74309577 - AluSc SINE Alu -7 302 1 1521 143 70 0 chr6 114969977 114970263 -74309291 - L1MA8 LINE L1 -459 5832 5527 1943 282 43 5 chr6 114970269 114971032 -74308522 + L1M1 LINE L1 2305 3096 -4469 555 143 18 6 chr6 114971033 114971163 -74308391 - L1MA8 LINE L1 -783 5363 5236 1241 203 21 12 chr6 114971176 114971531 -74308023 - LTR54 LTR ERV1 0 510 66 3002 172 12 3 chr6 114971532 114972101 -74307453 + L1 LINE L1 4657 5230 -916 466 257 68 8 chr6 114972110 114972323 -74307231 + LTR54B LTR ERV1 1 277 -221 2003 286 53 6 chr6 114972324 114973040 -74306514 - L1MEc LINE L1 -5612 784 35 261 0 0 0 chr6 114973051 114973080 -74306474 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2086 114 0 4 chr6 114973083 114973364 -74306190 - AluSq SINE Alu -33 280 1 1901 158 0 3 chr6 114973471 114973774 -74305780 + AluSx SINE Alu 1 302 -10 306 322 31 63 chr6 114975410 114975665 -74303889 + MLT1K LTR MaLR 174 420 -168 357 213 56 28 chr6 114975665 114975773 -74303781 + L1ME1 LINE L1 38 148 -6248 241 68 45 0 chr6 114975773 114975817 -74303737 + Alu SINE Alu 255 300 0 2548 243 100 41 chr6 114975828 114976805 -74302749 + L1ME1 LINE L1 183 1217 -5179 3325 237 53 18 chr6 114976822 114978195 -74301359 + L1ME1 LINE L1 4314 5743 -492 248 111 22 0 chr6 114978411 114978456 -74301098 + GA-rich Low_complexity Low_complexity 1 46 0 1392 240 30 65 chr6 114978718 114978988 -74300566 + L1ME1 LINE L1 5740 5985 -250 19148 92 18 25 chr6 114978988 114981713 -74297841 + Charlie3 DNA MER1_type 1 2706 -4 1392 240 30 65 chr6 114981713 114981951 -74297603 + L1ME1 LINE L1 5985 6230 -5 32 43 0 0 chr6 114982316 114982362 -74297192 + AT_rich Low_complexity Low_complexity 1 46 0 2180 111 3 7 chr6 114982557 114982854 -74296700 - AluSx SINE Alu -13 299 4 373 252 72 27 chr6 114982945 114983056 -74296498 - LTR33 LTR ERVL -357 164 49 190 307 142 8 chr6 114983223 114983350 -74296204 + MIR SINE MIR 51 194 -68 2042 213 18 18 chr6 114983825 114984271 -74295283 - MER82 DNA MER2_type -7 646 201 473 231 165 0 chr6 114984721 114984842 -74294712 - MER82 DNA MER2_type -510 143 3 780 139 24 18 chr6 114985148 114985314 -74294240 + CT-rich Low_complexity Low_complexity 1 180 0 2219 90 6 26 chr6 114985314 114985626 -74293928 - AluY SINE Alu 0 472 1 2752 147 10 12 chr6 114986609 114987091 -74292463 + L1MB2 LINE L1 5688 6168 -3 200 267 167 0 chr6 114987869 114987929 -74291625 - L2 LINE L2 0 3272 3203 793 263 36 0 chr6 114988062 114988256 -74291298 + MER63A DNA MER1_type 1 201 -9 296 279 50 101 chr6 114988289 114988508 -74291046 - L2 LINE L2 -221 3051 2844 329 377 9 0 chr6 114988634 114988740 -74290814 - L2 LINE L2 -20 3252 3146 190 331 56 14 chr6 114988917 114989059 -74290495 + L2 LINE L2 2264 2411 -903 5884 205 46 77 chr6 114989093 114991573 -74287981 + L1MA6 LINE L1 1 3327 -3881 11790 194 73 11 chr6 114991577 114992772 -74286782 + L1MA6 LINE L1 3412 4532 -2830 2409 97 0 0 chr6 114992772 114993082 -74286472 - AluSg SINE Alu 0 310 1 11790 194 73 11 chr6 114993082 114995508 -74284046 + L1MA6 LINE L1 4532 7245 -117 195 186 0 0 chr6 114995518 114995561 -74283993 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr6 114996185 114996206 -74283348 + AT_rich Low_complexity Low_complexity 1 21 0 359 331 109 78 chr6 114998059 114998792 -74280762 - L2 LINE L2 -420 2894 2139 1621 213 97 69 chr6 115001465 115002072 -74277482 - MLT1E3 LTR MaLR 0 624 1 371 251 60 70 chr6 115002151 115002366 -74277188 + MLT1J LTR MaLR 110 322 -189 666 225 13 7 chr6 115002455 115002605 -74276949 + MLT1B LTR MaLR 227 374 0 2005 43 0 4 chr6 115003062 115003297 -74276257 - AluY SINE Alu -45 266 33 8571 172 23 7 chr6 115003373 115005091 -74274463 + L1PA12 LINE L1 1 2004 -5577 599 210 34 0 chr6 115005085 115005204 -74274350 + L1PA13 LINE L1 335 457 -6330 * 231 149 54 81 chr6 115005152 115005226 -74274328 - L1PA13 LINE L1 -6292 495 424 * 942 216 0 0 chr6 115005280 115005447 -74274107 + L1PA13 LINE L1 464 630 -6157 2228 98 10 0 chr6 115005580 115005876 -74273678 + AluSx SINE Alu 1 299 -13 1368 94 0 0 chr6 115005876 115006056 -74273498 + AluSp SINE Alu 134 313 0 561 282 58 15 chr6 115008663 115008869 -74270685 + MIR SINE MIR 48 262 0 573 339 114 3 chr6 115009024 115009313 -74270241 - L2 LINE L2 -92 3221 2901 351 315 0 0 chr6 115010244 115010336 -74269218 - L2 LINE L2 -5 3267 3176 515 293 98 25 chr6 115010795 115011146 -74268408 + MLT1H LTR MaLR 1 335 -74 2149 157 40 0 chr6 115011747 115012122 -74267432 + MLT1B LTR MaLR 1 390 0 327 353 132 50 chr6 115012805 115013035 -74266519 - L2 LINE L2 -554 2760 2550 1695 163 61 25 chr6 115013035 115013397 -74266157 - THE1C LTR MaLR 0 375 1 9313 137 20 37 chr6 115013397 115015002 -74264552 - THE1C-int LTR MaLR 0 1580 4 1754 161 55 30 chr6 115015005 115015371 -74264183 - THE1C LTR MaLR 0 375 1 327 353 132 50 chr6 115015371 115015552 -74264002 - L2 LINE L2 -765 2549 2310 210 250 0 0 chr6 115015671 115015731 -74263823 + A-rich Low_complexity Low_complexity 1 60 0 673 288 78 37 chr6 115016159 115016454 -74263100 - MLT1I LTR MaLR -7 402 96 449 296 39 44 chr6 115018688 115018788 -74260766 - MIR SINE MIR -10 252 153 391 195 0 0 chr6 115018788 115018865 -74260689 - MER116 DNA Mariner -3 77 1 449 296 39 44 chr6 115018865 115018970 -74260584 - MIR SINE MIR -109 153 48 784 191 113 10 chr6 115019458 115019662 -74259892 - LTR55 LTR ERV -323 225 1 242 263 18 0 chr6 115019896 115019953 -74259601 + L2 LINE L2 3256 3313 0 424 320 20 7 chr6 115020018 115020168 -74259386 + MIR SINE MIR 105 256 -6 186 71 0 0 chr6 115021223 115021251 -74258303 + (TTG)n Simple_repeat Simple_repeat 2 29 0 211 314 20 39 chr6 115021607 115021709 -74257845 + L2 LINE L2 2140 2239 -1075 598 224 11 77 chr6 115021973 115022156 -74257398 + MER104 DNA Tc2 2 172 -8 899 225 6 122 chr6 115022523 115022829 -74256725 + LTR8 LTR ERV1 1 288 -424 1803 141 69 30 chr6 115022850 115023211 -74256343 + THE1C LTR MaLR 1 375 0 1020 206 68 139 chr6 115023262 115023763 -74255791 + LTR8 LTR ERV1 142 727 0 213 259 119 39 chr6 115023893 115023998 -74255556 - MIR SINE MIR -62 146 45 1306 212 62 0 chr6 115024275 115024563 -74254991 + LTR43 LTR ERV1 176 481 -121 295 229 14 76 chr6 115025384 115025528 -74254026 + L1M4 LINE L1 4234 4368 -1778 4590 168 52 0 chr6 115025557 115026623 -74252931 - L1MA4 LINE L1 -116 6184 5069 992 225 109 31 chr6 115026697 115027024 -74252530 - L1M4 LINE L1 -932 5214 4841 1773 169 62 0 chr6 115027024 115027349 -74252205 + L1PA16 LINE L1 5822 6166 0 992 225 109 31 chr6 115027349 115027469 -74252085 - L1M4 LINE L1 -1305 4841 4732 1599 193 0 23 chr6 115027567 115027868 -74251686 - AluJb SINE Alu -18 294 1 1975 246 50 106 chr6 115028082 115028526 -74251028 - L1M4 LINE L1 -1460 4686 4219 1597 137 101 0 chr6 115028526 115028841 -74250713 - AluSq SINE Alu 0 350 11 1975 246 50 106 chr6 115028841 115030024 -74249530 - L1M4 LINE L1 -1927 4219 3149 23 97 0 0 chr6 115030913 115030985 -74248569 + AT_rich Low_complexity Low_complexity 1 72 0 216 241 44 22 chr6 115031069 115031206 -74248348 + (CATATA)n Simple_repeat Simple_repeat 6 145 0 394 215 127 103 chr6 115031293 115031415 -74248139 + L1 LINE L1 3036 3154 -2992 1715 202 3 3 chr6 115031415 115031727 -74247827 + AluJo SINE Alu 1 312 0 394 215 127 103 chr6 115031727 115031944 -74247610 + L1 LINE L1 3154 3383 -2763 21 36 0 0 chr6 115031965 115031993 -74247561 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 115032441 115032471 -74247083 + AT_rich Low_complexity Low_complexity 1 30 0 192 244 192 0 chr6 115032519 115032597 -74246957 - MIR SINE MIR -1 261 169 843 237 11 6 chr6 115033512 115033689 -74245865 - MER45A DNA AcHobo 0 178 1 22 0 0 0 chr6 115034438 115034460 -74245094 + AT_rich Low_complexity Low_complexity 1 22 0 745 253 65 41 chr6 115034567 115034812 -74244742 + MIR SINE MIR 9 259 -3 2454 65 10 0 chr6 115035937 115036245 -74243309 - AluY SINE Alu 0 311 1 252 283 132 19 chr6 115037241 115037347 -74242207 - MIR3 SINE MIR -83 125 8 2463 56 0 3 chr6 115037431 115037736 -74241818 - AluY SINE Alu -7 304 1 1698 235 24 27 chr6 115038050 115038540 -74241014 - MLT1E2 LTR MaLR -14 612 2 5143 227 57 12 chr6 115038681 115041073 -74238481 - L1MC3 LINE L1 -743 5403 3664 3054 202 34 35 chr6 115041084 115041621 -74237933 - L1MB4 LINE L1 -1 6179 5643 414 57 0 0 chr6 115041621 115041674 -74237880 + (TA)n Simple_repeat Simple_repeat 2 54 0 3054 202 34 35 chr6 115041674 115042266 -74237288 - L1MB4 LINE L1 -537 5643 4993 1929 131 7 10 chr6 115042266 115042563 -74236991 - AluSx SINE Alu -16 296 1 3054 202 34 35 chr6 115042563 115042734 -74236820 - L1MB4 LINE L1 -1187 4993 4823 * 3452 186 9 0 chr6 115042727 115043382 -74236172 - L1P LINE L1 -3228 2918 2258 5807 106 15 22 chr6 115043384 115044639 -74234915 + L1PA13 LINE L1 4911 6163 0 2434 260 19 45 chr6 115044641 115045531 -74234023 - L1MB4 LINE L1 -1291 4855 3989 1374 188 104 0 chr6 115045516 115045861 -74233693 + L1MA9 LINE L1 5932 6312 0 * 4415 251 24 7 chr6 115045873 115047224 -74232330 - L1MB4 LINE L1 -2143 4003 2630 301 43 43 0 chr6 115047224 115047271 -74232283 + (TTTC)n Simple_repeat Simple_repeat 3 51 0 223 264 55 77 chr6 115047317 115047408 -74232146 - MER5B DNA MER1_type -84 94 6 27 29 0 0 chr6 115047890 115047924 -74231630 + AT_rich Low_complexity Low_complexity 1 34 0 4710 259 56 14 chr6 115049571 115051114 -74228440 - L1MEc LINE L1 -1051 5164 3557 1498 182 21 80 chr6 115051300 115051698 -74227856 - MER67C LTR ERV1 -251 263 1 2444 59 3 3 chr6 115051738 115052044 -74227510 - AluY SINE Alu -2 309 4 776 165 0 15 chr6 115052099 115052232 -74227322 - FLAM_C SINE Alu -12 131 1 314 212 62 9 chr6 115052356 115052469 -74227085 + L1ME3A LINE L1 5262 5380 -784 * 3455 247 63 45 chr6 115052466 115053942 -74225612 - L1MEc LINE L1 -2715 3500 1988 1338 272 44 30 chr6 115053942 115054401 -74225153 - LTR40c LTR ERVL 0 465 1 3455 247 63 45 chr6 115054401 115054951 -74224603 - L1MEc LINE L1 -4227 1988 1449 14560 156 13 6 chr6 115054998 115058728 -74220826 - L1MA1 LINE L1 0 7721 3964 12857 180 40 14 chr6 115058735 115059912 -74219642 - L1MA1 LINE L1 -5050 2515 1370 2574 52 0 0 chr6 115059912 115060218 -74219336 - AluY SINE Alu -5 306 1 12857 180 40 14 chr6 115060218 115061479 -74218075 - L1MA1 LINE L1 -6195 1370 13 2600 263 105 37 chr6 115061476 115061659 -74217895 - L1MEc LINE L1 -5084 1312 1143 * 799 159 0 0 chr6 115061659 115061785 -74217769 - FLAM_C SINE Alu -7 126 1 2600 263 105 37 chr6 115061785 115062647 -74216907 - L1MEc LINE L1 -5253 1143 196 592 271 71 64 chr6 115062789 115063398 -74216156 - L1M4 LINE L1 -2678 3468 2856 717 316 89 25 chr6 115066314 115066672 -74212882 + L1ME3A LINE L1 5567 5894 -276 23 0 0 0 chr6 115066830 115066853 -74212701 + AT_rich Low_complexity Low_complexity 1 23 0 1773 175 0 7 chr6 115066858 115067161 -74212393 + AluSx SINE Alu 2 302 -10 23 54 0 0 chr6 115067254 115067291 -74212263 + AT_rich Low_complexity Low_complexity 1 37 0 391 0 0 20 chr6 115067291 115067342 -74212212 - L1PA3 LINE L1 -3 6152 6103 2186 25 0 0 chr6 115067342 115067688 -74211866 + L1P2 LINE L1 5171 5516 -639 1658 148 36 4 chr6 115069757 115070065 -74209489 + AluJo SINE Alu 1 317 0 669 274 116 17 chr6 115070110 115070402 -74209152 + Charlie7 DNA MER1_type 1 321 -2291 2500 213 65 90 chr6 115070410 115071229 -74208325 + Charlie7 DNA MER1_type 1438 2221 -391 2201 97 7 0 chr6 115071229 115071527 -74208027 - AluSq SINE Alu -13 300 1 2500 213 65 90 chr6 115071527 115071879 -74207675 + Charlie7 DNA MER1_type 2221 2580 -32 22 0 0 0 chr6 115074472 115074494 -74205060 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr6 115074661 115074685 -74204869 + (TG)n Simple_repeat Simple_repeat 1 24 0 215 204 0 56 chr6 115076147 115076201 -74203353 - L3 LINE CR1 -23 1554 1504 394 306 8 32 chr6 115076267 115076391 -74203163 + L2 LINE L2 3187 3307 -6 372 43 0 0 chr6 115076582 115076628 -74202926 + (TG)n Simple_repeat Simple_repeat 1 46 0 255 310 0 108 chr6 115076857 115076986 -74202568 + MIR3 SINE MIR 68 182 -26 234 116 0 0 chr6 115077404 115077447 -74202107 + (TC)n Simple_repeat Simple_repeat 2 44 0 21 82 0 0 chr6 115080780 115080829 -74198725 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr6 115082960 115082983 -74196571 + AT_rich Low_complexity Low_complexity 1 23 0 304 245 7 64 chr6 115083138 115083276 -74196278 + MLT1I LTR MaLR 266 440 -10 490 266 76 13 chr6 115083582 115083740 -74195814 + MER5B DNA MER1_type 7 174 -4 2126 121 3 0 chr6 115083854 115084144 -74195410 - AluSx SINE Alu -21 291 1 454 261 11 85 chr6 115084223 115084399 -74195155 + L2 LINE L2 3150 3312 -1 745 308 78 71 chr6 115084497 115085072 -74194482 + L1ME4a LINE L1 5298 5880 -241 522 256 143 12 chr6 115085216 115085384 -74194170 - MIR SINE MIR 0 262 73 572 88 0 0 chr6 115085998 115086078 -74193476 - MADE1 DNA Mariner 0 80 1 288 375 35 43 chr6 115087009 115087241 -74192313 + L2 LINE L2 3043 3272 0 21 0 0 0 chr6 115087701 115087722 -74191832 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 115088389 115088411 -74191143 + AT_rich Low_complexity Low_complexity 1 22 0 513 297 20 12 chr6 115088567 115088770 -74190784 + L2 LINE L2 2789 2988 -325 363 100 25 25 chr6 115089057 115089137 -74190417 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 26 0 0 0 chr6 115089211 115089237 -74190317 + AT_rich Low_complexity Low_complexity 1 26 0 547 333 131 33 chr6 115089420 115089817 -74189737 + L1MC4a LINE L1 5494 5929 -1879 412 278 45 23 chr6 115090848 115090981 -74188573 - L2 LINE L2 0 3313 3178 230 277 84 0 chr6 115093498 115093581 -74185973 + MIR SINE MIR 34 123 -139 2125 114 0 10 chr6 115094163 115094462 -74185092 - AluSc SINE Alu -13 296 1 28 29 0 0 chr6 115094469 115094504 -74185050 + AT_rich Low_complexity Low_complexity 1 35 0 292 364 6 29 chr6 115095141 115095314 -74184240 + MIR SINE MIR 20 188 -74 216 366 11 0 chr6 115098002 115098095 -74181459 + MIR SINE MIR 26 119 -143 29 47 0 0 chr6 115099119 115099162 -74180392 + AT_rich Low_complexity Low_complexity 1 43 0 1770 191 13 29 chr6 115099415 115099791 -74179763 - MLT1A2 LTR MaLR -4 370 1 3047 132 6 28 chr6 115099948 115100480 -74179074 - L1MC1 LINE L1 0 6333 5814 315 0 0 0 chr6 115100968 115101003 -74178551 + (CA)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr6 115102423 115102444 -74177110 + (TA)n Simple_repeat Simple_repeat 1 21 0 243 0 0 0 chr6 115103099 115103126 -74176428 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2040 310 135 36 chr6 115103872 115104298 -74175256 - L2 LINE L2 -10 3303 2920 2062 112 3 11 chr6 115104298 115104653 -74174901 + AluSp SINE Alu 1 353 0 2040 310 135 36 chr6 115104653 115105714 -74173840 - L2 LINE L2 -393 2920 1654 1432 214 54 44 chr6 115105849 115106262 -74173292 - MLT1C LTR MaLR -44 413 7 333 341 0 0 chr6 115106266 115106351 -74173203 - L2 LINE L2 -2111 1203 1119 196 283 33 17 chr6 115106610 115106670 -74172884 + MIR SINE MIR 34 94 -114 209 260 19 34 chr6 115106703 115106795 -74172759 - MIR SINE MIR -32 176 88 193 225 0 0 chr6 115106867 115106907 -74172647 + MIR SINE MIR 112 151 -111 693 106 0 0 chr6 115108183 115108287 -74171267 + (GAAA)n Simple_repeat Simple_repeat 4 107 0 512 155 19 0 chr6 115108289 115108392 -74171162 + L1MA9 LINE L1 6169 6273 -39 421 268 25 16 chr6 115109068 115109193 -74170361 + MIR SINE MIR 36 162 -46 246 282 141 0 chr6 115109696 115109774 -74169780 + L2 LINE L2 3225 3313 0 2039 127 0 7 chr6 115109779 115110079 -74169475 + AluSx SINE Alu 3 300 -12 340 316 36 47 chr6 115110317 115110510 -74169044 + L2 LINE L2 1244 1434 -1880 539 248 32 13 chr6 115110705 115110862 -74168692 + L2 LINE L2 1436 1595 -1719 321 297 101 27 chr6 115110898 115111046 -74168508 + MIR3 SINE MIR 2 160 -48 304 306 132 16 chr6 115111309 115111430 -74168124 + MIR3 SINE MIR 58 192 -16 205 330 88 22 chr6 115112160 115112251 -74167303 - L2 LINE L2 -20 3252 3156 254 272 12 12 chr6 115114323 115114404 -74165150 + (CCG)n Simple_repeat Simple_repeat 1 81 0 21 57 0 0 chr6 115118279 115118314 -74161240 + AT_rich Low_complexity Low_complexity 1 35 0 33 80 0 0 chr6 115118587 115118662 -74160892 + AT_rich Low_complexity Low_complexity 1 75 0 231 231 19 0 chr6 115121653 115121705 -74157849 + (TG)n Simple_repeat Simple_repeat 2 54 0 300 91 0 0 chr6 115122053 115122097 -74157457 + (CA)n Simple_repeat Simple_repeat 1 44 0 207 173 0 0 chr6 115122912 115122964 -74156590 + (CA)n Simple_repeat Simple_repeat 2 53 0 369 284 27 7 chr6 115126460 115126608 -74152946 - Charlie8 DNA MER1_type -2196 221 71 25 0 0 0 chr6 115126895 115126920 -74152634 + AT_rich Low_complexity Low_complexity 1 25 0 253 398 87 6 chr6 115127944 115128105 -74151449 - MIR3 SINE MIR -1 207 34 245 157 20 20 chr6 115128359 115128410 -74151144 - L2 LINE L2 0 3313 3263 1207 216 93 102 chr6 115129059 115129550 -74150004 - MLT2B1 LTR ERVL -20 534 2 438 20 0 0 chr6 115129779 115129830 -74149724 + (TG)n Simple_repeat Simple_repeat 2 52 0 1794 142 11 0 chr6 115129835 115130117 -74149437 + MER7A DNA MER2_type 64 346 0 591 117 0 0 chr6 115131385 115131479 -74148075 + L1PA15 LINE L1 6066 6159 -6 231 284 102 23 chr6 115132006 115132094 -74147460 - MER5B DNA MER1_type 0 178 84 262 271 96 60 chr6 115134627 115134793 -74144761 - L2 LINE L2 -2 3311 3140 25 51 0 0 chr6 115135051 115135090 -74144464 + AT_rich Low_complexity Low_complexity 1 39 0 477 301 83 10 chr6 115135376 115135569 -74143985 - MLT1J LTR MaLR -304 207 1 473 49 49 0 chr6 115135617 115135698 -74143856 + (TG)n Simple_repeat Simple_repeat 2 86 0 301 208 132 0 chr6 115135700 115135806 -74143748 - L1ME4a LINE L1 -12 6109 5990 314 119 143 12 chr6 115135848 115135932 -74143622 - L1ME4a LINE L1 -9 6112 6018 249 197 90 101 chr6 115135957 115136042 -74143512 - L1ME4a LINE L1 -205 5916 5832 2494 59 0 0 chr6 115136042 115136346 -74143208 - AluY SINE Alu -7 304 1 249 197 90 101 chr6 115136346 115136438 -74143116 - L1ME4a LINE L1 -289 5832 5741 441 326 28 51 chr6 115136447 115136662 -74142892 + MIR SINE MIR 45 254 -8 198 143 0 0 chr6 115136665 115136700 -74142854 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 2577 101 22 0 chr6 115137650 115138006 -74141548 - THE1B LTR MaLR 0 364 1 387 327 15 59 chr6 115138409 115138611 -74140943 + MIR3 SINE MIR 1 193 -15 22 0 0 0 chr6 115139628 115139650 -74139904 + AT_rich Low_complexity Low_complexity 1 22 0 360 263 60 15 chr6 115140255 115140388 -74139166 - MIR SINE MIR -33 229 91 528 325 91 10 chr6 115140743 115140952 -74138602 - MIR SINE MIR -14 248 23 414 162 0 0 chr6 115141070 115141144 -74138410 + MER116 DNA Mariner 3 76 -4 858 239 17 0 chr6 115141150 115141330 -74138224 + MER5A DNA MER1_type 6 188 -1 323 336 9 9 chr6 115141343 115141456 -74138098 - L2 LINE L2 -18 3295 3183 1611 164 19 36 chr6 115144016 115144381 -74135173 - L1M3 LINE L1 -556 5612 5254 230 216 0 0 chr6 115144387 115144438 -74135116 + L1M3 LINE L1 5605 5655 -513 1037 140 22 11 chr6 115144460 115144638 -74134916 + L1M3 LINE L1 5608 5787 -547 3172 39 0 0 chr6 115144845 115145231 -74134323 - L1PA4 LINE L1 0 6155 5770 3850 32 4 0 chr6 115145251 115145717 -74133837 - L1PA4 LINE L1 -8 6147 5680 1911 39 0 0 chr6 115145717 115145947 -74133607 - L1PA4 LINE L1 -376 5779 5550 32 57 0 0 chr6 115146053 115146106 -74133448 + AT_rich Low_complexity Low_complexity 1 53 0 232 310 14 0 chr6 115146658 115146729 -74132825 + L2 LINE L2 2426 2497 -817 490 270 52 46 chr6 115146829 115147003 -74132551 + MIR SINE MIR 1 175 -87 1143 148 30 0 chr6 115147004 115147206 -74132348 - L1MA4 LINE L1 -141 6159 5952 332 89 0 0 chr6 115147206 115147260 -74132294 + L1MA4A LINE L1 6244 6299 -4 220 304 120 0 chr6 115148138 115148230 -74131324 + L2 LINE L2 3165 3267 -5 227 290 10 10 chr6 115148412 115148512 -74131042 + (CAGT)n Simple_repeat Simple_repeat 3 102 0 188 355 146 0 chr6 115152004 115152114 -74127440 - L2 LINE L2 -16 3297 3172 24 0 0 0 chr6 115152883 115152907 -74126647 + AT_rich Low_complexity Low_complexity 1 24 0 205 248 228 10 chr6 115152938 115153039 -74126515 - L2 LINE L2 -2 3311 3189 312 343 30 15 chr6 115153806 115153940 -74125614 + MIR SINE MIR 122 257 -5 656 262 58 11 chr6 115154023 115154214 -74125340 + MIR SINE MIR 60 259 -3 205 222 0 74 chr6 115155042 115155096 -74124458 - L3 LINE CR1 -12 1565 1516 197 347 95 50 chr6 115156385 115156647 -74122907 + L2 LINE L2 2381 2654 -660 181 0 69 0 chr6 115157460 115157489 -74122065 + (TTA)n Simple_repeat Simple_repeat 3 33 0 459 36 0 0 chr6 115157489 115157544 -74122010 - L1PA5 LINE L1 -18 6136 6082 22 35 0 0 chr6 115157554 115157583 -74121971 + AT_rich Low_complexity Low_complexity 1 29 0 30 59 0 0 chr6 115157703 115157754 -74121800 + AT_rich Low_complexity Low_complexity 1 51 0 228 262 175 19 chr6 115158413 115158516 -74121038 + MIR SINE MIR 111 229 -33 189 360 40 40 chr6 115158678 115158778 -74120776 + MIR SINE MIR 48 147 -61 201 364 0 0 chr6 115159470 115159536 -74120018 - L2 LINE L2 -1075 2239 2174 323 307 136 23 chr6 115160101 115160277 -74119277 - MIR SINE MIR -65 197 2 21 0 0 0 chr6 115161340 115161361 -74118193 + AT_rich Low_complexity Low_complexity 1 21 0 888 171 6 41 chr6 115161649 115161819 -74117735 - FRAM SINE Alu -12 164 1 1323 143 25 8 chr6 115162305 115162542 -74117012 - L1PA15 LINE L1 0 6165 5925 1591 159 12 21 chr6 115162827 115163160 -74116394 - MER61B LTR ERV1 0 425 2 797 244 93 0 chr6 115163318 115163511 -74116043 - MER58A DNA MER1_type -2 222 12 202 48 0 71 chr6 115164521 115164563 -74114991 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1280 232 10 7 chr6 115164566 115164736 -74114818 - AluJo SINE Alu -22 290 117 291 28 0 0 chr6 115164736 115164772 -74114782 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1280 232 10 7 chr6 115164772 115164890 -74114664 - AluJo SINE Alu -195 117 1 24 67 0 0 chr6 115165010 115165055 -74114499 + AT_rich Low_complexity Low_complexity 1 45 0 453 166 41 0 chr6 115167595 115167740 -74111814 + (TA)n Simple_repeat Simple_repeat 1 151 0 267 276 109 73 chr6 115168276 115168468 -74111086 - L3 LINE CR1 -27 1550 1352 375 307 174 15 chr6 115168522 115168786 -74110768 - L3 LINE CR1 -384 1193 888 314 286 0 0 chr6 115169147 115169217 -74110337 + MIR3 SINE MIR 86 155 -53 1133 199 35 15 chr6 115170097 115170358 -74109196 - MER39 LTR ERV1 -49 658 393 333 295 19 0 chr6 115171394 115171499 -74108055 + A-rich Low_complexity Low_complexity 3 109 0 329 357 14 0 chr6 115171540 115171680 -74107874 + MIR3 SINE MIR 64 205 -3 226 313 74 45 chr6 115172279 115172455 -74107099 + MIR SINE MIR 48 228 -34 469 215 65 108 chr6 115172988 115173174 -74106380 - MER5B DNA MER1_type 0 178 1 23 0 0 0 chr6 115176783 115176806 -74102748 + AT_rich Low_complexity Low_complexity 1 23 0 230 270 14 40 chr6 115177196 115177270 -74102284 + L2 LINE L2 3241 3312 -1 31 26 0 0 chr6 115178591 115178629 -74100925 + AT_rich Low_complexity Low_complexity 1 38 0 205 167 0 0 chr6 115180237 115180273 -74099281 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1829 120 72 4 chr6 115180443 115180719 -74098835 - AluSq SINE Alu -18 295 1 1819 234 123 18 chr6 115181831 115182394 -74097160 - MLT1E2 LTR MaLR -4 622 1 385 238 67 88 chr6 115182639 115182832 -74096722 + MIR SINE MIR 41 229 -33 22 0 0 0 chr6 115184494 115184516 -74095038 + AT_rich Low_complexity Low_complexity 1 22 0 607 63 0 0 chr6 115184523 115184602 -74094952 + MLT2A2 LTR ERVL 1 79 -374 278 233 27 14 chr6 115184623 115184696 -74094858 + MER103 DNA DNA 55 128 -38 2460 61 3 13 chr6 115185166 115185478 -74094076 - AluY SINE Alu -2 309 1 21 0 0 0 chr6 115185768 115185789 -74093765 + AT_rich Low_complexity Low_complexity 1 21 0 2360 172 16 0 chr6 115185789 115186214 -74093340 - L1PB4 LINE L1 -10 6146 5715 307 374 7 22 chr6 115186214 115186353 -74093201 - MER5A DNA MER1_type -39 150 14 41 36 0 0 chr6 115186939 115186994 -74092560 + AT_rich Low_complexity Low_complexity 1 55 0 289 373 32 8 chr6 115189670 115189796 -74089758 + L3 LINE CR1 1444 1572 -5 205 349 45 0 chr6 115190761 115190827 -74088727 - L3 LINE CR1 -66 1511 1443 259 312 32 76 chr6 115191773 115191930 -74087624 + MIR3 SINE MIR 18 167 -41 759 69 0 0 chr6 115193754 115193856 -74085698 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 23 68 0 0 chr6 115194888 115194932 -74084622 + AT_rich Low_complexity Low_complexity 1 44 0 186 43 0 0 chr6 115196970 115196993 -74082561 + (TTTTTA)n Simple_repeat Simple_repeat 5 27 0 305 233 0 0 chr6 115197186 115197246 -74082308 + MIR SINE MIR 124 183 -79 2037 71 0 46 chr6 115199153 115199436 -74080118 - AluY SINE Alu -8 303 34 1786 155 46 27 chr6 115202391 115202759 -74076795 + THE1C LTR MaLR 1 375 0 307 227 30 0 chr6 115202858 115202924 -74076630 - L2 LINE L2 0 3313 3246 191 368 26 9 chr6 115203294 115203408 -74076146 - L2 LINE L2 -655 2659 2544 1913 99 32 14 chr6 115204230 115204512 -74075042 - AluSx SINE Alu -23 289 3 333 0 0 0 chr6 115205214 115205251 -74074303 + (CA)n Simple_repeat Simple_repeat 2 38 0 336 337 68 6 chr6 115205856 115206019 -74073535 - MIR3 SINE MIR -6 202 30 368 260 31 48 chr6 115207964 115208147 -74071407 + MIR SINE MIR 25 202 -60 325 281 52 74 chr6 115208380 115208515 -74071039 - L2 LINE L2 0 3313 3182 246 238 179 0 chr6 115209270 115209354 -74070200 + MIR SINE MIR 41 139 -69 483 270 68 73 chr6 115210854 115211102 -74068452 - MIR SINE MIR -3 259 13 397 286 146 79 chr6 115211623 115212144 -74067410 + L1MEd LINE L1 88 643 -5476 489 286 28 55 chr6 115212165 115212490 -74067064 - L1MC5 LINE L1 -37 7924 7609 301 146 0 36 chr6 115212551 115212606 -74066948 + L1MC4 LINE L1 6652 6704 -1338 478 328 15 19 chr6 115212659 115212918 -74066636 - L1MC4a LINE L1 -441 7367 7110 591 219 172 21 chr6 115213169 115213361 -74066193 - L1MC4a LINE L1 -855 6953 6733 407 263 94 85 chr6 115213412 115213955 -74065599 + L1MEd LINE L1 683 1230 -4889 442 353 12 4 chr6 115213979 115214234 -74065320 + L1MEd LINE L1 1317 1573 -4737 378 97 83 0 chr6 115214597 115214741 -74064813 + (TA)n Simple_repeat Simple_repeat 1 156 0 268 263 126 0 chr6 115214801 115214896 -74064658 + MARNA DNA Mariner 463 569 -17 25 0 0 0 chr6 115215201 115215226 -74064328 + AT_rich Low_complexity Low_complexity 1 25 0 1614 181 26 10 chr6 115215334 115215637 -74063917 + AluSx SINE Alu 1 308 -4 420 55 0 0 chr6 115215645 115215700 -74063854 + (TA)n Simple_repeat Simple_repeat 2 56 0 223 204 20 0 chr6 115215826 115215875 -74063679 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2268 71 0 3 chr6 115215923 115216236 -74063318 + AluY SINE Alu 1 312 0 371 271 105 33 chr6 115216305 115216486 -74063068 - L1ME LINE L1 -438 5683 5490 2235 112 0 3 chr6 115216641 115216946 -74062608 - AluSx SINE Alu -8 304 1 183 259 19 0 chr6 115217713 115217767 -74061787 + L2 LINE L2 2836 2890 -424 419 336 8 8 chr6 115217974 115218102 -74061452 + L2 LINE L2 3142 3269 -3 7611 29 0 0 chr6 115218567 115219708 -74059846 - L1PA3 LINE L1 -5 6150 5010 1290 0 0 0 chr6 115219708 115219851 -74059703 + L1PA3 LINE L1 4878 5020 -1126 198 253 265 0 chr6 115220485 115220568 -74058986 + L2 LINE L2 3197 3301 -12 23 54 0 0 chr6 115221621 115221658 -74057896 + AT_rich Low_complexity Low_complexity 1 37 0 310 232 0 176 chr6 115222371 115222448 -74057106 + MIR SINE MIR 36 125 -137 216 0 0 0 chr6 115222448 115222472 -74057082 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1484 168 74 0 chr6 115222475 115222731 -74056823 - AluSx SINE Alu -31 281 7 310 232 0 176 chr6 115222731 115222791 -74056763 + MIR SINE MIR 127 152 -110 611 265 45 70 chr6 115222845 115223158 -74056396 + L1ME LINE L1 5504 5808 -313 328 293 67 87 chr6 115223727 115224072 -74055482 - L2 LINE L2 -1232 2082 1745 21 71 0 0 chr6 115225261 115225303 -74054251 + AT_rich Low_complexity Low_complexity 1 42 0 416 299 249 6 chr6 115226703 115226880 -74052674 - MIR SINE MIR -15 247 28 287 332 61 14 chr6 115228201 115228415 -74051139 + L1ME3A LINE L1 5734 5957 -213 21 0 0 0 chr6 115228783 115228804 -74050750 + AT_rich Low_complexity Low_complexity 1 21 0 257 352 39 47 chr6 115228922 115229050 -74050504 - L2 LINE L2 -12 3301 3175 22 0 0 0 chr6 115229383 115229405 -74050149 + AT_rich Low_complexity Low_complexity 1 22 0 266 248 70 102 chr6 115229466 115229568 -74049986 + MIR SINE MIR 53 150 -112 2333 72 0 10 chr6 115229568 115229874 -74049680 + AluY SINE Alu 1 303 -8 266 248 70 102 chr6 115229874 115229928 -74049626 + MIR SINE MIR 150 204 -58 2200 111 0 3 chr6 115231207 115231513 -74048041 - AluSg SINE Alu -5 305 1 217 307 34 23 chr6 115231998 115232086 -74047468 + MIR3 SINE MIR 111 199 -9 31 58 0 0 chr6 115232233 115232285 -74047269 + AT_rich Low_complexity Low_complexity 1 52 0 265 61 0 0 chr6 115232348 115232381 -74047173 + U2 snRNA snRNA 1 33 -155 198 167 0 0 chr6 115232738 115232774 -74046780 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 841 236 197 38 chr6 115232807 115233285 -74046269 - Charlie7 DNA MER1_type -73 2539 1986 635 287 39 4 chr6 115233354 115233608 -74045946 - Charlie7 DNA MER1_type -1000 1612 1350 29 0 0 0 chr6 115233681 115233710 -74045844 + AT_rich Low_complexity Low_complexity 1 29 0 3996 151 43 19 chr6 115233710 115234406 -74045148 - MER4E LTR ERV1 -28 751 39 546 303 36 24 chr6 115234413 115234750 -74044804 + L1M4 LINE L1 2959 3299 -2847 637 228 7 21 chr6 115234799 115234944 -74044610 + L1M4 LINE L1 4865 5007 -1139 1179 143 5 20 chr6 115234949 115235152 -74044402 - LTR9B LTR ERV1 0 644 445 333 319 52 11 chr6 115235148 115235339 -74044215 - Charlie7 DNA MER1_type -1348 1264 1066 * 5624 123 0 0 chr6 115235586 115236768 -74042786 - L1PB1 LINE L1 -3 6148 4987 2706 189 2 6 chr6 115236769 115237310 -74042244 + L1 LINE L1 4488 5026 -1120 317 361 15 15 chr6 115237884 115238014 -74041540 + MIR SINE MIR 20 149 -113 298 79 0 0 chr6 115238057 115238095 -74041459 + tRNA-Tyr-TAC tRNA tRNA 1 38 -38 22 80 0 0 chr6 115238182 115238232 -74041322 + AT_rich Low_complexity Low_complexity 1 50 0 181 366 54 11 chr6 115239070 115239163 -74040391 - L2 LINE L2 -10 3303 3207 478 296 13 7 chr6 115239307 115239459 -74040095 - MER103 DNA DNA -2 164 12 242 331 41 0 chr6 115239609 115239730 -74039824 + L1ME LINE L1 5527 5652 -469 414 0 0 0 chr6 115239969 115240015 -74039539 + (TG)n Simple_repeat Simple_repeat 2 47 0 287 250 80 45 chr6 115240030 115240142 -74039412 - MIR SINE MIR -27 235 120 216 164 73 0 chr6 115241018 115241073 -74038481 + (TTATA)n Simple_repeat Simple_repeat 4 62 0 26 50 0 0 chr6 115242288 115242328 -74037226 + AT_rich Low_complexity Low_complexity 1 40 0 296 289 35 9 chr6 115242995 115243109 -74036445 - MLT1I LTR MaLR 0 409 293 42 48 0 0 chr6 115243560 115243623 -74035931 + AT_rich Low_complexity Low_complexity 1 63 0 223 348 148 9 chr6 115244166 115244281 -74035273 - L2 LINE L2 -211 3061 2931 2148 122 6 6 chr6 115244392 115244703 -74034851 - AluSx SINE Alu -1 311 1 396 231 11 0 chr6 115244946 115245037 -74034517 + MLT1I LTR MaLR 311 402 -7 21 0 0 0 chr6 115245064 115245085 -74034469 + AT_rich Low_complexity Low_complexity 1 21 0 2271 108 0 3 chr6 115245398 115245705 -74033849 - AluSq SINE Alu -1 312 7 609 233 123 55 chr6 115248665 115248884 -74030670 + MIR SINE MIR 28 261 -1 963 244 97 3 chr6 115248889 115249197 -74030357 - MER46C DNA MER2_type 0 338 2 257 353 167 9 chr6 115250272 115250493 -74029061 - L2 LINE L2 -3 3269 3014 231 306 162 18 chr6 115251663 115251774 -74027780 - MIR3 SINE MIR -3 205 79 211 239 0 0 chr6 115252010 115252056 -74027498 + (TA)n Simple_repeat Simple_repeat 1 46 0 455 345 147 34 chr6 115252366 115253028 -74026526 + L2 LINE L2 2352 3083 -189 204 179 0 0 chr6 115253363 115253402 -74026152 + (CATA)n Simple_repeat Simple_repeat 2 40 0 462 49 0 0 chr6 115258097 115258158 -74021396 + (TG)n Simple_repeat Simple_repeat 2 62 0 1352 127 35 0 chr6 115260963 115261192 -74018362 + L1MA2 LINE L1 6068 6304 0 265 340 165 24 chr6 115261209 115261421 -74018133 + L3 LINE CR1 1331 1572 -5 473 32 16 0 chr6 115262015 115262078 -74017476 + (CA)n Simple_repeat Simple_repeat 1 64 0 297 311 44 37 chr6 115262173 115262308 -74017246 + L2 LINE L2 3137 3272 0 266 356 0 0 chr6 115262466 115262567 -74016987 + CT-rich Low_complexity Low_complexity 2 102 0 266 398 32 14 chr6 115263799 115264015 -74015539 + L3 LINE CR1 274 493 -1084 269 313 0 0 chr6 115264141 115264224 -74015330 - MIR SINE MIR 0 262 180 681 263 50 0 chr6 115264270 115264468 -74015086 + MIR SINE MIR 46 253 -9 625 307 48 0 chr6 115265308 115265497 -74014057 - MIR SINE MIR -18 244 47 720 288 96 8 chr6 115267114 115267354 -74012200 + MIR SINE MIR 2 262 0 2770 10 0 3 chr6 115267468 115267779 -74011775 - AluYa5 SINE Alu -1 310 1 7511 32 0 0 chr6 115267972 115269306 -74010248 - L1PA4 LINE L1 -5 6150 4817 202 148 37 0 chr6 115269318 115269372 -74010182 + (CAT)n Simple_repeat Simple_repeat 2 57 0 546 238 8 0 chr6 115269376 115269502 -74010052 - MIR SINE MIR -10 252 126 28 0 0 0 chr6 115270190 115270218 -74009336 + AT_rich Low_complexity Low_complexity 1 28 0 738 311 48 16 chr6 115270393 115270641 -74008913 - MIR SINE MIR 0 262 7 369 305 48 0 chr6 115271469 115271574 -74007980 + MIR3 SINE MIR 61 170 -38 428 336 0 0 chr6 115272222 115272341 -74007213 - L2 LINE L2 0 3313 3195 190 269 32 97 chr6 115274063 115274156 -74005398 + L2 LINE L2 3227 3313 0 1194 21 0 0 chr6 115276971 115277111 -74002443 - AluY SINE Alu 0 311 172 475 318 44 16 chr6 115277243 115277495 -74002059 - MIR SINE MIR -1 261 3 207 394 32 14 chr6 115278614 115278830 -74000724 + L2 LINE L2 1737 1956 -1358 24 0 0 0 chr6 115280917 115280941 -73998613 + AT_rich Low_complexity Low_complexity 1 24 0 205 250 42 42 chr6 115281646 115281718 -73997836 - L2 LINE L2 -18 3295 3224 1259 190 42 3 chr6 115281961 115282296 -73997258 + L1MA4 LINE L1 5928 6299 -6 295 259 60 42 chr6 115282462 115282628 -73996926 - L2 LINE L2 -941 2373 2205 2094 124 0 13 chr6 115282985 115283291 -73996263 - AluSx SINE Alu -10 302 1 205 324 0 0 chr6 115283353 115283421 -73996133 + MIR SINE MIR 156 223 -39 2211 144 18 70 chr6 115286350 115286564 -73992990 - Tigger2a DNA MER2_type -2274 434 255 354 45 0 0 chr6 115286564 115286608 -73992946 + (TA)n Simple_repeat Simple_repeat 1 44 0 2211 144 18 70 chr6 115286608 115286851 -73992703 - Tigger2a DNA MER2_type -2453 255 1 23 33 0 0 chr6 115287113 115287143 -73992411 + AT_rich Low_complexity Low_complexity 1 30 0 250 182 50 20 chr6 115287397 115287496 -73992058 + (TA)n Simple_repeat Simple_repeat 1 102 0 197 213 37 0 chr6 115287516 115287624 -73991930 + (TA)n Simple_repeat Simple_repeat 2 113 0 25 31 0 0 chr6 115287631 115287663 -73991891 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 115289421 115289443 -73990111 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr6 115289970 115290000 -73989554 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr6 115290121 115290148 -73989406 + AT_rich Low_complexity Low_complexity 1 27 0 524 327 40 24 chr6 115290749 115290997 -73988557 + MIR SINE MIR 7 258 -4 524 87 0 54 chr6 115291862 115291954 -73987600 - L1PA7 LINE L1 -54 6100 6014 26 0 0 0 chr6 115291970 115291996 -73987558 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr6 115292446 115292475 -73987079 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr6 115292795 115292817 -73986737 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr6 115293400 115293423 -73986131 + (T)n Simple_repeat Simple_repeat 1 23 0 380 20 20 0 chr6 115293460 115293509 -73986045 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1751 130 11 21 chr6 115293511 115293795 -73985759 - AluSx SINE Alu -29 283 3 191 318 106 0 chr6 115294227 115294293 -73985261 + L2 LINE L2 3228 3300 -13 286 147 18 28 chr6 115294934 115295043 -73984511 + (TA)n Simple_repeat Simple_repeat 1 108 0 27 49 0 0 chr6 115295511 115295552 -73984002 + AT_rich Low_complexity Low_complexity 1 41 0 23 86 0 0 chr6 115295691 115295749 -73983805 + AT_rich Low_complexity Low_complexity 1 58 0 216 192 77 0 chr6 115296685 115296763 -73982791 + (ATATG)n Simple_repeat Simple_repeat 2 85 0 * 225 164 73 0 chr6 115296710 115296765 -73982789 + (TTATA)n Simple_repeat Simple_repeat 3 61 0 23 0 0 0 chr6 115298060 115298083 -73981471 + AT_rich Low_complexity Low_complexity 1 23 0 472 294 92 46 chr6 115299524 115299762 -73979792 + MIR SINE MIR 2 250 -12 310 355 29 7 chr6 115299785 115299923 -73979631 - MIR SINE MIR -69 193 53 393 189 8 33 chr6 115300042 115300164 -73979390 + CT-rich Low_complexity Low_complexity 3 121 0 2308 103 0 0 chr6 115300222 115300524 -73979030 + AluSc SINE Alu 1 302 -7 1990 307 70 19 chr6 115300524 115301770 -73977784 + L2 LINE L2 1970 3283 -30 262 154 0 39 chr6 115301774 115301826 -73977728 - MLT2B1 LTR ERVL -7 513 464 263 292 0 0 chr6 115301849 115301938 -73977616 - L1MC4 LINE L1 -1339 6703 6615 1462 94 52 14 chr6 115301966 115302178 -73977376 - MLT2A2 LTR ERVL -41 412 193 198 152 0 0 chr6 115302204 115302237 -73977317 + L2 LINE L2 3240 3272 0 186 343 86 43 chr6 115302235 115302375 -73977179 - L2 LINE L2 0 3272 3127 * 1111 142 71 210 chr6 115302545 115302722 -73976832 + THE1C LTR MaLR 1 97 -278 2126 67 17 27 chr6 115302722 115303020 -73976534 - L1PA7 LINE L1 -1 6153 5859 1111 142 71 210 chr6 115303020 115303265 -73976289 + THE1C LTR MaLR 97 375 0 189 272 61 79 chr6 115304169 115304283 -73975271 + MIR3 SINE MIR 90 201 -7 180 344 153 6 chr6 115306057 115306214 -73973340 - L2 LINE L2 0 3313 3134 30 27 0 0 chr6 115306606 115306643 -73972911 + AT_rich Low_complexity Low_complexity 1 37 0 240 310 80 9 chr6 115306790 115306903 -73972651 + L1MEd LINE L1 267 387 -5732 1724 143 3 68 chr6 115307258 115307566 -73971988 + AluSx SINE Alu 19 306 -6 366 221 60 163 chr6 115307783 115308092 -73971462 + L1MEd LINE L1 854 1105 -5014 216 97 0 0 chr6 115308092 115308123 -73971431 + (CCTA)n Simple_repeat Simple_repeat 2 32 0 366 221 60 163 chr6 115308123 115308260 -73971294 + L1MEd LINE L1 1105 1254 -4865 383 315 46 46 chr6 115308334 115308575 -73970979 + HAL1 LINE L1 1513 1753 -754 185 352 66 0 chr6 115308925 115309016 -73970538 - L2 LINE L2 -310 2962 2866 885 179 34 22 chr6 115309152 115309303 -73970251 + FAM SINE Alu 1 24 -161 237 65 0 0 chr6 115309303 115309334 -73970220 + (CA)n Simple_repeat Simple_repeat 2 32 0 885 179 34 22 chr6 115309334 115309361 -73970193 + FAM SINE Alu 24 49 0 524 91 0 0 chr6 115309404 115309481 -73970073 + L1PA5 LINE L1 6070 6146 -8 1971 153 52 34 chr6 115309824 115310262 -73969292 - L1MA8 LINE L1 0 6291 5846 239 186 0 0 chr6 115310292 115310335 -73969219 - MER63 DNA MER1_type -316 746 704 268 285 58 36 chr6 115310379 115310516 -73969038 - L2 LINE L2 -947 2367 2228 761 230 0 56 chr6 115310836 115311032 -73968522 + LTR41 LTR ERVL 1 185 -588 358 222 32 106 chr6 115311389 115311578 -73967976 + LTR41 LTR ERVL 593 767 -6 21 0 0 0 chr6 115311707 115311728 -73967826 + AT_rich Low_complexity Low_complexity 1 21 0 2244 138 100 8 chr6 115312507 115312897 -73966657 + MSTB LTR MaLR 1 426 0 561 292 107 39 chr6 115312976 115313209 -73966345 - LTR16A LTR ERVL -176 274 26 324 0 0 0 chr6 115313238 115313274 -73966280 + (TA)n Simple_repeat Simple_repeat 2 37 0 191 222 0 0 chr6 115314908 115314944 -73964610 + MIR3 SINE MIR 146 181 -27 203 313 45 0 chr6 115314992 115315059 -73964495 - L2 LINE L2 -57 3256 3187 284 287 21 11 chr6 115315811 115315905 -73963649 + GA-rich Low_complexity Low_complexity 3 97 0 813 239 28 24 chr6 115315919 115316132 -73963422 - MER58A DNA MER1_type -5 219 6 245 261 0 68 chr6 115316267 115316355 -73963199 + L1MC4 LINE L1 6614 6695 -1347 226 133 0 0 chr6 115316359 115316404 -73963150 + LTR66 LTR ERVL 394 438 -172 27 29 0 0 chr6 115316586 115316620 -73962934 + AT_rich Low_complexity Low_complexity 1 34 0 3325 135 35 0 chr6 115317491 115318033 -73961521 + L1PA16 LINE L1 5595 6155 -11 400 229 165 9 chr6 115318180 115318289 -73961265 + L2 LINE L2 3188 3313 0 265 338 216 20 chr6 115319001 115319205 -73960349 + MIR SINE MIR 13 256 -6 308 141 0 42 chr6 115319242 115319313 -73960241 + (A)n Simple_repeat Simple_repeat 1 68 0 9483 213 19 18 chr6 115319565 115323023 -73956531 - L1PA16 LINE L1 -9 6157 2705 247 313 31 10 chr6 115323217 115323313 -73956241 - MIR3 SINE MIR -23 185 88 23 0 0 0 chr6 115323704 115323727 -73955827 + AT_rich Low_complexity Low_complexity 1 23 0 28 61 0 0 chr6 115324899 115324948 -73954606 + AT_rich Low_complexity Low_complexity 1 49 0 383 295 16 31 chr6 115325822 115325951 -73953603 + MIR SINE MIR 40 166 -96 271 229 0 29 chr6 115326015 115326085 -73953469 + CT-rich Low_complexity Low_complexity 2 69 0 563 171 9 0 chr6 115326244 115326349 -73953205 + AluSp/q SINE Alu 199 304 -9 254 226 0 119 chr6 115327041 115327125 -73952429 - L2 LINE L2 -2 3311 3238 312 342 9 9 chr6 115327150 115327261 -73952293 - MIR3 SINE MIR -54 154 44 32 26 0 0 chr6 115328661 115328700 -73950854 + AT_rich Low_complexity Low_complexity 1 39 0 433 290 32 8 chr6 115328760 115328884 -73950670 - MIR SINE MIR -133 129 3 312 310 20 20 chr6 115328894 115329094 -73950460 - L1MC4a LINE L1 -1935 5873 5674 216 303 53 0 chr6 115329211 115329287 -73950267 - L2 LINE L2 -4 3309 3230 405 58 0 0 chr6 115329434 115329486 -73950068 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 71 0 0 chr6 115330948 115330990 -73948564 + AT_rich Low_complexity Low_complexity 1 42 0 263 306 14 0 chr6 115331318 115331390 -73948164 - MIR3 SINE MIR -43 165 93 208 352 19 38 chr6 115332706 115332811 -73946743 + MIR SINE MIR 2 104 -158 21 71 0 0 chr6 115332958 115333000 -73946554 + AT_rich Low_complexity Low_complexity 1 42 0 191 302 79 0 chr6 115333060 115333123 -73946431 + MIR SINE MIR 193 260 -2 333 0 0 0 chr6 115333366 115333403 -73946151 + (TG)n Simple_repeat Simple_repeat 2 38 0 491 348 161 45 chr6 115333786 115334702 -73944852 + L3 LINE CR1 431 1452 -125 227 260 91 13 chr6 115335059 115335136 -73944418 - L1MC4 LINE L1 -177 7865 7783 273 348 56 30 chr6 115336647 115336914 -73942640 + L2 LINE L2 1494 1767 -1547 22 35 0 0 chr6 115336984 115337013 -73942541 + AT_rich Low_complexity Low_complexity 1 29 0 475 272 87 29 chr6 115337105 115337417 -73942137 - L1ME4a LINE L1 -262 5859 5530 353 309 99 29 chr6 115337438 115337764 -73941790 - L1ME4a LINE L1 -748 5398 5107 552 223 188 17 chr6 115337876 115338462 -73941092 - L1ME3A LINE L1 -96 6074 5271 298 260 39 10 chr6 115338578 115338682 -73940872 + (TG)n Simple_repeat Simple_repeat 2 108 0 23 0 0 0 chr6 115339607 115339630 -73939924 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr6 115339953 115339988 -73939566 + AT_rich Low_complexity Low_complexity 1 35 0 244 307 23 23 chr6 115340480 115340568 -73938986 + MIR SINE MIR 12 99 -163 659 305 57 5 chr6 115340629 115340839 -73938715 - MIR SINE MIR -10 252 32 1783 149 14 7 chr6 115341825 115342114 -73937440 + AluJb SINE Alu 7 297 -15 246 62 0 0 chr6 115342440 115342472 -73937082 + (TC)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr6 115343443 115343467 -73936087 + AT_rich Low_complexity Low_complexity 1 24 0 29 84 0 0 chr6 115344597 115344668 -73934886 + AT_rich Low_complexity Low_complexity 1 71 0 437 327 65 51 chr6 115345310 115345390 -73934164 - L3 LINE CR1 -112 1465 1388 1250 185 0 116 chr6 115345390 115345719 -73933835 - AluJb SINE Alu -11 291 1 437 327 65 51 chr6 115345719 115345741 -73933813 - L3 LINE CR1 -189 1388 1368 2144 102 0 0 chr6 115345741 115346070 -73933484 + AluY SINE Alu 1 329 0 437 327 65 51 chr6 115346070 115346333 -73933221 - L3 LINE CR1 -209 1368 1091 231 114 0 0 chr6 115347593 115347628 -73931926 + (CA)n Simple_repeat Simple_repeat 2 36 0 462 49 0 0 chr6 115347739 115347800 -73931754 + (TG)n Simple_repeat Simple_repeat 2 62 0 1890 146 7 0 chr6 115347812 115348087 -73931467 - AluSx SINE Alu -31 281 5 26 0 0 0 chr6 115349024 115349050 -73930504 + AT_rich Low_complexity Low_complexity 1 26 0 185 366 23 53 chr6 115350016 115350147 -73929407 - L2 LINE L2 -3 3269 3143 5663 124 0 11 chr6 115350363 115351296 -73928258 - L1PA16 LINE L1 -5 6161 5222 254 290 14 14 chr6 115352003 115352072 -73927482 + MIR SINE MIR 16 84 -124 185 343 14 14 chr6 115352132 115352202 -73927352 - MIR SINE MIR -28 234 165 351 332 194 14 chr6 115352242 115352597 -73926957 + L2 LINE L2 2403 2821 -493 200 250 0 0 chr6 115352993 115353033 -73926521 + L2 LINE L2 3232 3271 -42 254 327 103 26 chr6 115353971 115354127 -73925427 + MIR SINE MIR 11 178 -84 515 266 12 45 chr6 115354422 115354605 -73924949 - MIR SINE MIR -21 187 11 341 393 48 31 chr6 115354669 115355089 -73924465 - L2 LINE L2 -575 2739 2313 23 33 0 0 chr6 115355644 115355674 -73923880 + AT_rich Low_complexity Low_complexity 1 30 0 6965 56 9 2 chr6 115355987 115357162 -73922392 + L1PA7 LINE L1 4974 6154 0 439 372 110 36 chr6 115357594 115358554 -73921000 + L2 LINE L2 1945 2975 -339 29 60 0 0 chr6 115358609 115358659 -73920895 + AT_rich Low_complexity Low_complexity 1 50 0 216 182 0 0 chr6 115358795 115358839 -73920715 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1024 304 42 28 chr6 115358845 115359200 -73920354 - L2 LINE L2 -1 3312 2953 1155 204 0 14 chr6 115359437 115359658 -73919896 + AluJb SINE Alu 87 304 -8 1903 121 28 3 chr6 115359694 115359983 -73919571 - AluSx SINE Alu -16 296 1 287 130 0 0 chr6 115360195 115360241 -73919313 + Alu SINE Alu 237 282 -19 327 49 0 0 chr6 115360241 115360282 -73919272 + (CATA)n Simple_repeat Simple_repeat 2 42 0 206 266 113 89 chr6 115360762 115360886 -73918668 - MER5A DNA MER1_type 0 189 63 293 305 92 18 chr6 115360901 115361065 -73918489 + MLT1I LTR MaLR 1 176 -233 245 208 0 148 chr6 115361203 115361279 -73918275 + MLT1I LTR MaLR 324 383 -26 487 322 27 0 chr6 115361279 115361462 -73918092 - MER5A DNA MER1_type -1 188 1 245 208 0 148 chr6 115361462 115361486 -73918068 + MLT1I LTR MaLR 383 409 0 22 70 0 0 chr6 115361843 115361886 -73917668 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr6 115362241 115362273 -73917281 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr6 115362723 115362772 -73916782 + AT_rich Low_complexity Low_complexity 1 49 0 4375 206 36 18 chr6 115362884 115364469 -73915085 - L1MB2 LINE L1 -2 6169 4558 683 278 133 30 chr6 115365394 115365761 -73913793 + MLT1I LTR MaLR 5 409 0 300 229 82 41 chr6 115365763 115365885 -73913669 - L1ME4a LINE L1 -18 6103 5977 21 36 0 0 chr6 115366538 115366566 -73912988 + AT_rich Low_complexity Low_complexity 1 28 0 328 313 75 0 chr6 115366735 115366869 -73912685 + L2 LINE L2 3170 3313 0 180 245 20 61 chr6 115367310 115367359 -73912195 + L3 LINE CR1 80 126 -1451 377 314 109 29 chr6 115367594 115367833 -73911721 - MIR SINE MIR -1 261 4 788 222 134 10 chr6 115368550 115368744 -73910810 - MER20 DNA MER1_type -1 218 1 272 321 0 12 chr6 115368913 115368997 -73910557 - L2 LINE L2 -4 3309 3227 2180 134 43 3 chr6 115369411 115369761 -73909793 - THE1B LTR MaLR 0 364 1 204 235 0 20 chr6 115369968 115370019 -73909535 - MIR SINE MIR -132 130 81 240 122 0 0 chr6 115371632 115371673 -73907881 + (T)n Simple_repeat Simple_repeat 1 41 0 216 0 0 0 chr6 115371976 115372000 -73907554 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 833 243 160 45 chr6 115372000 115372313 -73907241 - L2 LINE L2 -13 3300 2952 1284 223 309 10 chr6 115372326 115372805 -73906749 - L2 LINE L2 -874 2440 1819 1475 211 44 15 chr6 115372818 115373159 -73906395 + MLT1A1 LTR MaLR 14 364 -1 627 291 29 10 chr6 115373159 115373365 -73906189 - L2 LINE L2 -1491 1823 1614 377 364 105 55 chr6 115374044 115374273 -73905281 + L2 LINE L2 2813 3029 -243 1865 138 40 3 chr6 115374273 115374569 -73904985 - AluSq SINE Alu -5 308 2 377 364 105 55 chr6 115374569 115374776 -73904778 + L2 LINE L2 3029 3271 -1 238 246 158 18 chr6 115376120 115376234 -73903320 + MIR SINE MIR 57 186 -76 2158 130 3 0 chr6 115376670 115376977 -73902577 + AluSq SINE Alu 1 308 -5 351 273 87 33 chr6 115377586 115377736 -73901818 + MIR SINE MIR 32 189 -73 1781 153 76 17 chr6 115377781 115378135 -73901419 + THE1C LTR MaLR 1 375 0 6346 74 30 7 chr6 115378706 115380123 -73899431 - L1PA7 LINE L1 -3 6151 4691 12407 117 10 25 chr6 115380127 115382579 -73896975 - L1P3 LINE L1 -4003 2458 1 327 252 134 0 chr6 115384718 115384837 -73894717 + MLT1K LTR MaLR 454 588 0 2053 128 31 39 chr6 115385340 115385699 -73893855 - THE1B LTR MaLR 0 364 9 914 308 36 9 chr6 115386300 115386635 -73892919 - L2 LINE L2 -669 2645 2302 2183 261 29 29 chr6 115386662 115387281 -73892273 - MER77 LTR ERV1 -4 601 54 249 337 123 12 chr6 115387565 115387728 -73891826 - MIR SINE MIR -26 236 56 264 203 0 17 chr6 115390869 115390928 -73888626 + L2 LINE L2 3256 3313 0 221 299 201 41 chr6 115391443 115391637 -73887917 - MIR SINE MIR -1 261 37 1735 228 58 6 chr6 115391824 115392233 -73887321 - Charlie1b DNA MER1_type -2239 522 81 2092 112 7 0 chr6 115392233 115392528 -73887026 + AluSg SINE Alu 1 297 -13 1735 228 58 6 chr6 115392528 115392614 -73886940 - Charlie1b DNA MER1_type -2680 81 1 366 291 76 47 chr6 115392827 115392999 -73886555 + L2 LINE L2 1860 2036 -1278 792 152 7 7 chr6 115393223 115393368 -73886186 - L1PA15 LINE L1 -2 6163 6019 2158 121 156 0 chr6 115393369 115393741 -73885813 - L1PA15 LINE L1 -281 5884 5455 1340 136 25 0 chr6 115393735 115394001 -73885553 + L1PA15 LINE L1 5212 5485 -680 * 226 291 0 58 chr6 115394271 115394357 -73885197 + L2 LINE L2 2993 3073 -199 339 113 13 0 chr6 115394502 115394566 -73884988 + L1P LINE L1 5288 5355 -810 222 224 30 60 chr6 115394892 115394959 -73884595 - MER5B DNA MER1_type -32 146 82 1633 161 26 3 chr6 115395535 115395839 -73883715 - L1MA6 LINE L1 0 6300 5990 21 0 0 0 chr6 115395839 115395860 -73883694 + AT_rich Low_complexity Low_complexity 1 21 0 335 105 18 0 chr6 115395920 115395977 -73883577 + (CA)n Simple_repeat Simple_repeat 2 59 0 21 0 0 0 chr6 115396359 115396380 -73883174 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 115396482 115396503 -73883051 + AT_rich Low_complexity Low_complexity 1 21 0 312 169 65 0 chr6 115397089 115397166 -73882388 + L1MA3 LINE L1 6223 6304 -1 444 294 73 11 chr6 115397829 115398006 -73881548 - MIR SINE MIR -26 236 49 377 329 29 7 chr6 115398152 115398292 -73881262 - MIR SINE MIR -71 191 49 26 0 0 0 chr6 115399487 115399513 -73880041 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr6 115400390 115400410 -73879144 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2009 108 0 4 chr6 115400410 115400687 -73878867 - AluSg1 SINE Alu -33 276 1 564 295 68 19 chr6 115401070 115401263 -73878291 + MIR SINE MIR 44 256 -6 979 106 0 0 chr6 115401775 115401917 -73877637 - L1MA3 LINE L1 0 6305 6164 999 176 34 76 chr6 115401946 115402184 -73877370 - AluJo SINE Alu -84 228 1 892 63 70 0 chr6 115402184 115402327 -73877227 - L1MA2 LINE L1 -118 6186 6034 2052 123 10 0 chr6 115403571 115403872 -73875682 + AluSx SINE Alu 1 304 -8 1632 231 80 36 chr6 115405199 115405709 -73873845 - MER39 LTR ERV1 0 707 1 180 324 110 29 chr6 115405709 115405882 -73873672 + L2 LINE L2 3017 3203 -110 613 221 86 39 chr6 115407599 115407893 -73871661 - MER33 DNA MER1_type 0 363 8 21 36 0 0 chr6 115408567 115408595 -73870959 + AT_rich Low_complexity Low_complexity 1 28 0 191 145 48 0 chr6 115408704 115408787 -73870767 + (TA)n Simple_repeat Simple_repeat 2 88 0 28 60 5 0 chr6 115409515 115409623 -73869931 + AT_rich Low_complexity Low_complexity 1 63 0 223 343 36 80 chr6 115411634 115411771 -73867783 + L2 LINE L2 3142 3272 0 2018 117 10 16 chr6 115411944 115412251 -73867303 - AluSx SINE Alu -7 305 1 832 173 86 0 chr6 115412555 115412717 -73866837 + AluJb SINE Alu 135 310 -2 577 271 69 17 chr6 115414076 115414364 -73865190 - MER34B LTR ERV1 0 565 263 29 0 0 0 chr6 115414365 115414394 -73865160 + AT_rich Low_complexity Low_complexity 1 29 0 193 165 22 44 chr6 115414416 115414507 -73865047 + (TATATG)n Simple_repeat Simple_repeat 1 89 0 310 86 0 13 chr6 115414514 115414564 -73864990 - MER34 LTR ERV1 -503 39 1 22 35 0 0 chr6 115415081 115415110 -73864444 + AT_rich Low_complexity Low_complexity 1 29 0 42 58 0 29 chr6 115415599 115415702 -73863852 + AT_rich Low_complexity Low_complexity 1 100 0 1209 195 28 115 chr6 115415711 115416111 -73863443 - MLT1A1 LTR MaLR 0 365 1 207 265 24 12 chr6 115416141 115416224 -73863330 + (TTTA)n Simple_repeat Simple_repeat 3 86 0 2048 157 0 42 chr6 115416301 115416678 -73862876 - MER47A DNA MER2_type 0 366 6 22 80 0 0 chr6 115416700 115416750 -73862804 + AT_rich Low_complexity Low_complexity 1 50 0 28 0 0 0 chr6 115416935 115416963 -73862591 + AT_rich Low_complexity Low_complexity 1 28 0 378 265 118 45 chr6 115417646 115417827 -73861727 + MIR SINE MIR 34 227 -35 390 42 0 0 chr6 115417984 115418032 -73861522 + (TG)n Simple_repeat Simple_repeat 2 49 0 269 374 59 14 chr6 115418339 115418561 -73860993 + MIR SINE MIR 19 250 -12 239 281 0 0 chr6 115419272 115419329 -73860225 - L2 LINE L2 0 3272 3216 1667 191 0 10 chr6 115420514 115420823 -73858731 + AluJb SINE Alu 1 306 -6 29 47 0 0 chr6 115420869 115420912 -73858642 + AT_rich Low_complexity Low_complexity 1 43 0 332 373 72 12 chr6 115421203 115421401 -73858153 - MIR SINE MIR -54 208 1 22 0 0 0 chr6 115423109 115423131 -73856423 + AT_rich Low_complexity Low_complexity 1 22 0 297 368 146 27 chr6 115423210 115423539 -73856015 - L2 LINE L2 -16 3256 2889 264 283 98 11 chr6 115423581 115423673 -73855881 - L2 LINE L2 -938 2376 2277 * 392 242 20 10 chr6 115423645 115423744 -73855810 + L2 LINE L2 3213 3312 -1 2383 311 122 18 chr6 115423766 115425060 -73854494 - L2 LINE L2 -1009 2305 877 21 0 0 0 chr6 115425567 115425588 -73853966 + AT_rich Low_complexity Low_complexity 1 21 0 328 101 56 0 chr6 115425615 115425704 -73853850 + (TA)n Simple_repeat Simple_repeat 2 95 0 24 0 0 0 chr6 115427087 115427111 -73852443 + AT_rich Low_complexity Low_complexity 1 24 0 1272 282 76 14 chr6 115427158 115427580 -73851974 - LTR16B LTR ERVL -14 450 3 211 28 56 0 chr6 115428105 115428141 -73851413 + (TA)n Simple_repeat Simple_repeat 1 38 0 340 269 0 21 chr6 115428172 115428265 -73851289 + L1MC4 LINE L1 6613 6703 -1339 216 418 0 20 chr6 115428530 115428628 -73850926 - L2 LINE L2 -10 3262 3167 247 228 0 70 chr6 115428683 115428740 -73850814 - L2 LINE L2 -42 3271 3219 26 0 0 0 chr6 115429025 115429051 -73850503 + AT_rich Low_complexity Low_complexity 1 26 0 240 255 53 11 chr6 115429333 115429427 -73850127 - L1ME LINE L1 -460 5661 5564 808 184 18 12 chr6 115429457 115429620 -73849934 + MLT1B LTR MaLR 1 164 -226 38 39 0 0 chr6 115429674 115429726 -73849828 + AT_rich Low_complexity Low_complexity 1 52 0 534 210 61 53 chr6 115429726 115430023 -73849531 + MLT1B LTR MaLR 169 389 -1 401 281 94 1 chr6 115430890 115431065 -73848489 + MIR SINE MIR 3 190 -63 22 0 0 0 chr6 115431970 115431992 -73847562 + AT_rich Low_complexity Low_complexity 1 22 0 406 241 263 0 chr6 115432892 115433029 -73846525 + MER5A DNA MER1_type 15 187 -2 23 0 0 0 chr6 115433833 115433856 -73845698 + AT_rich Low_complexity Low_complexity 1 23 0 1214 57 0 0 chr6 115437242 115437425 -73842129 + L1PA5 LINE L1 5985 6167 0 216 281 18 0 chr6 115437463 115437520 -73842034 - MIR SINE MIR -114 148 91 25 0 0 0 chr6 115438638 115438663 -73840891 + AT_rich Low_complexity Low_complexity 1 25 0 30 45 0 0 chr6 115438738 115438782 -73840772 + AT_rich Low_complexity Low_complexity 1 44 0 281 192 64 13 chr6 115439327 115439405 -73840149 - MIR3 SINE MIR -19 189 108 342 0 0 0 chr6 115439788 115439826 -73839728 + (T)n Simple_repeat Simple_repeat 1 38 0 181 173 0 39 chr6 115440577 115440629 -73838925 + GA-rich Low_complexity Low_complexity 2 51 0 21 0 0 0 chr6 115441736 115441757 -73837797 + AT_rich Low_complexity Low_complexity 1 21 0 1471 153 4 20 chr6 115441933 115442181 -73837373 + AluJb SINE Alu 11 254 -58 251 201 92 0 chr6 115442195 115442266 -73837288 + AluJ/FRAM SINE Alu 220 287 -15 326 310 30 0 chr6 115444225 115444325 -73835229 - MIR3 SINE MIR -1 207 105 473 265 86 0 chr6 115444694 115444811 -73834743 - MER94 DNA DNA -6 128 2 2508 146 10 7 chr6 115444843 115445260 -73834294 - L1PA16 LINE L1 -10 6156 5739 28 48 0 0 chr6 115446613 115446655 -73832899 + AT_rich Low_complexity Low_complexity 1 42 0 29 28 0 0 chr6 115448578 115448614 -73830940 + AT_rich Low_complexity Low_complexity 1 36 0 26 50 0 0 chr6 115448693 115448733 -73830821 + AT_rich Low_complexity Low_complexity 1 40 0 210 296 157 19 chr6 115448950 115449058 -73830496 - MIR SINE MIR -17 245 123 420 257 83 56 chr6 115449169 115449313 -73830241 + MIR SINE MIR 7 154 -108 213 224 0 0 chr6 115449943 115449992 -73829562 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 746 213 188 40 chr6 115452237 115452589 -73826965 - LTR37A LTR ERV1 -19 407 4 27 29 0 0 chr6 115452972 115453006 -73826548 + AT_rich Low_complexity Low_complexity 1 34 0 810 286 12 37 chr6 115453494 115453739 -73825815 - MLT1A2 LTR MaLR -135 239 1 1847 162 51 3 chr6 115453739 115454072 -73825482 - MLT1A2-int LTR MaLR 0 1735 1387 1803 229 41 63 chr6 115454132 115454788 -73824766 - MLT1A2-int LTR MaLR -632 739 6 1260 244 126 34 chr6 115454792 115455268 -73824286 - MLT2B1 LTR ERVL 0 520 1 198 314 128 67 chr6 115455318 115455780 -73823774 - L2 LINE L2 -494 2820 2331 2116 152 19 30 chr6 115456026 115456394 -73823160 - THE1B LTR MaLR 0 364 1 11276 94 20 3 chr6 115456394 115457948 -73821606 - THE1B-int LTR MaLR 0 1580 1 2064 140 28 30 chr6 115457949 115458313 -73821241 - THE1B LTR MaLR -1 363 1 225 94 0 0 chr6 115459218 115459250 -73820304 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 235 256 39 90 chr6 115459267 115459302 -73820252 - L2 LINE L2 -90 3223 3188 697 199 233 0 chr6 115459302 115459478 -73820076 - MER20 DNA MER1_type 0 219 3 235 256 39 90 chr6 115459478 115459598 -73819956 - L2 LINE L2 -125 3188 3076 347 240 58 10 chr6 115460081 115460185 -73819369 + MIR SINE MIR 20 128 -80 229 343 119 28 chr6 115460409 115460552 -73819002 - L3 LINE CR1 -411 1166 1011 316 204 57 57 chr6 115460563 115460651 -73818903 - MER106B DNA MER1_type -15 1044 957 353 301 128 4 chr6 115460820 115461046 -73818508 + MIR SINE MIR 9 262 0 2050 169 52 7 chr6 115461227 115461634 -73817920 - MSTB LTR MaLR -1 425 1 329 309 12 0 chr6 115461818 115461899 -73817655 - MER5B DNA MER1_type -94 84 3 217 283 33 0 chr6 115461939 115461999 -73817555 - L3 LINE CR1 -1106 471 410 249 206 76 54 chr6 115462002 115462094 -73817460 - MER34 LTR ERV1 0 542 449 321 311 68 10 chr6 115462565 115462668 -73816886 - MIR SINE MIR -153 109 1 902 214 10 5 chr6 115462837 115463033 -73816521 - LTR31 LTR ERV1 -15 604 408 2893 143 18 11 chr6 115463036 115463633 -73815921 - MER4E LTR ERV1 0 766 3 1248 261 18 18 chr6 115463643 115463969 -73815585 - LTR31 LTR ERV1 -219 400 75 21 0 0 0 chr6 115464383 115464404 -73815150 + AT_rich Low_complexity Low_complexity 1 21 0 2588 118 4 55 chr6 115464476 115464595 -73814959 - L1PB1 LINE L1 -10 6141 6018 2297 89 0 0 chr6 115464595 115464888 -73814666 - AluY SINE Alu -18 293 1 2588 118 4 55 chr6 115464888 115465138 -73814416 - L1PB1 LINE L1 -133 6018 5757 222 37 0 0 chr6 115465138 115465165 -73814389 + (TG)n Simple_repeat Simple_repeat 1 27 0 324 0 0 0 chr6 115465170 115465206 -73814348 + (TA)n Simple_repeat Simple_repeat 2 37 0 2404 98 0 6 chr6 115465212 115465527 -73814027 - AluSp SINE Alu 0 313 1 2588 118 4 55 chr6 115465527 115465600 -73813954 - L1PB1 LINE L1 -403 5748 5708 22 0 0 0 chr6 115466160 115466182 -73813372 + AT_rich Low_complexity Low_complexity 1 22 0 2097 125 3 0 chr6 115466977 115467273 -73812281 - AluSx SINE Alu -15 297 1 223 318 0 0 chr6 115467408 115467474 -73812080 + (CATA)n Simple_repeat Simple_repeat 3 68 0 22 0 0 0 chr6 115467630 115467652 -73811902 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 115468971 115468993 -73810561 + AT_rich Low_complexity Low_complexity 1 22 0 331 155 42 0 chr6 115469110 115469181 -73810373 - MER116 DNA Mariner -5 75 2 276 375 109 8 chr6 115469206 115469334 -73810220 + L2 LINE L2 3116 3256 -16 23 68 0 0 chr6 115469465 115469509 -73810045 + AT_rich Low_complexity Low_complexity 1 44 0 1992 151 0 0 chr6 115469763 115470055 -73809499 - AluSx SINE Alu -20 292 1 202 321 24 36 chr6 115470085 115470169 -73809385 - MIR SINE MIR -81 127 45 2030 144 0 6 chr6 115470447 115470760 -73808794 - AluSx SINE Alu 0 312 2 544 296 63 27 chr6 115470762 115470985 -73808569 - MIR SINE MIR -30 232 2 776 173 0 8 chr6 115471758 115471885 -73807669 - FLAM_C SINE Alu -17 126 1 756 225 55 60 chr6 115471910 115472327 -73807227 - L1MC5 LINE L1 -30 7931 7517 2091 233 35 61 chr6 115472330 115473290 -73806264 - L1MC5 LINE L1 -542 7419 6482 2365 44 41 3 chr6 115473659 115473954 -73805600 + AluYa5 SINE Alu 1 306 -5 28 29 0 0 chr6 115474520 115474555 -73804999 + AT_rich Low_complexity Low_complexity 1 35 0 412 380 64 49 chr6 115475121 115475652 -73803902 - L2 LINE L2 -1 3271 2734 2484 67 0 3 chr6 115475801 115476113 -73803441 - AluY SINE Alu 0 311 1 340 319 13 51 chr6 115478144 115478301 -73801253 - MIR SINE MIR -56 206 56 1585 191 21 3 chr6 115478594 115478877 -73800677 + AluJb SINE Alu 3 290 -22 21 0 0 0 chr6 115478877 115478898 -73800656 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 115479829 115479850 -73799704 + AT_rich Low_complexity Low_complexity 1 21 0 204 319 64 11 chr6 115480163 115480257 -73799297 - MIR SINE MIR -108 154 56 25 51 0 0 chr6 115480327 115480366 -73799188 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr6 115480424 115480455 -73799099 + AT_rich Low_complexity Low_complexity 1 31 0 2621 16 39 0 chr6 115480509 115480815 -73798739 - AluYb8 SINE Alu 0 318 1 271 176 27 0 chr6 115480956 115481030 -73798524 + (TA)n Simple_repeat Simple_repeat 1 76 0 298 138 50 25 chr6 115481038 115481198 -73798356 + (TTTA)n Simple_repeat Simple_repeat 3 166 0 27 0 0 0 chr6 115481198 115481225 -73798329 + AT_rich Low_complexity Low_complexity 1 27 0 258 199 0 32 chr6 115481225 115481411 -73798143 + (TA)n Simple_repeat Simple_repeat 1 180 0 597 152 11 43 chr6 115482418 115482602 -73796952 + CT-rich Low_complexity Low_complexity 1 178 0 661 136 23 34 chr6 115482617 115482794 -73796760 + CT-rich Low_complexity Low_complexity 4 178 0 240 59 0 0 chr6 115482798 115482832 -73796722 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 1291 173 68 32 chr6 115482834 115483083 -73796471 - AluJo SINE Alu -25 287 30 324 196 77 16 chr6 115483106 115483217 -73796337 - AluJ/FLAM SINE Alu -225 77 1 270 187 0 143 chr6 115484438 115484529 -73795025 + MER45A DNA AcHobo 101 178 0 385 282 214 4 chr6 115484693 115484959 -73794595 + L2 LINE L2 2014 2335 -979 288 323 55 40 chr6 115485346 115485547 -73794007 + L2 LINE L2 2603 2806 -508 238 332 107 86 chr6 115485587 115486018 -73793536 + L2 LINE L2 2820 3259 -13 1918 164 0 3 chr6 115488496 115488801 -73790753 - AluJb SINE Alu -4 308 5 2275 165 34 29 chr6 115490356 115490799 -73788755 - MER65A LTR ERV1 0 445 1 312 0 0 0 chr6 115492111 115492148 -73787406 + MER85 DNA T2_type 1 37 -102 26 0 0 0 chr6 115492154 115492180 -73787374 + AT_rich Low_complexity Low_complexity 1 26 0 4008 27 2 2 chr6 115492180 115492662 -73786892 - L1PA4 LINE L1 -1 6154 5673 356 308 26 0 chr6 115492675 115492792 -73786762 - MLT1K LTR MaLR -93 495 376 2371 81 0 3 chr6 115493845 115494152 -73785402 + AluSc SINE Alu 1 306 -3 314 270 98 7 chr6 115494354 115494499 -73785055 - MIR SINE MIR -56 206 44 266 146 0 18 chr6 115496154 115496209 -73783345 + (TA)n Simple_repeat Simple_repeat 1 54 0 240 181 36 0 chr6 115496390 115496473 -73783081 + (TA)n Simple_repeat Simple_repeat 2 87 0 388 224 0 0 chr6 115496488 115496555 -73782999 - AluY SINE Alu -20 281 215 370 282 18 36 chr6 115497137 115497247 -73782307 - MIR3 SINE MIR -16 192 85 225 211 19 0 chr6 115497668 115497720 -73781834 - MIR SINE MIR -28 234 182 22 56 0 0 chr6 115499655 115499691 -73779863 + AT_rich Low_complexity Low_complexity 1 36 0 292 276 26 0 chr6 115500420 115500536 -73779018 + (TA)n Simple_repeat Simple_repeat 1 119 0 607 268 56 35 chr6 115500979 115501210 -73778344 + MIR SINE MIR 11 246 -16 37 52 0 0 chr6 115501217 115501275 -73778279 + AT_rich Low_complexity Low_complexity 1 58 0 228 279 0 16 chr6 115501281 115501342 -73778212 + CT-rich Low_complexity Low_complexity 1 60 0 208 267 0 30 chr6 115501685 115501786 -73777768 + T-rich Low_complexity Low_complexity 1 98 0 267 65 26 117 chr6 115502183 115502260 -73777294 + (CATA)n Simple_repeat Simple_repeat 2 71 0 259 200 0 18 chr6 115502260 115502315 -73777239 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 27 0 0 0 chr6 115502328 115502355 -73777199 + AT_rich Low_complexity Low_complexity 1 27 0 668 244 36 18 chr6 115502496 115502664 -73776890 - MLT1A1 LTR MaLR -52 313 143 4201 133 5 58 chr6 115502664 115503467 -73776087 - L1MA4A LINE L1 -2 6301 5542 1790 158 29 50 chr6 115503468 115503504 -73776050 + THE1C LTR MaLR 1 36 -339 2390 63 7 7 chr6 115503504 115503804 -73775750 - AluY SINE Alu -11 300 1 1790 158 29 50 chr6 115503804 115504148 -73775406 + THE1C LTR MaLR 36 373 -2 4425 132 10 69 chr6 115504153 115504976 -73774578 + THE1C-int LTR MaLR 4 777 -803 1509 93 4 13 chr6 115504982 115505208 -73774346 + THE1C-int LTR MaLR 1357 1580 0 1637 131 114 43 chr6 115505208 115505558 -73773996 + THE1C LTR MaLR 1 375 0 12952 195 28 25 chr6 115505558 115508854 -73770700 - L1MA4A LINE L1 -743 5403 2234 43482 42 2 1 chr6 115508856 115515008 -73764546 - L1PA3 LINE L1 -1 6154 2 720 137 158 7 chr6 115515008 115515210 -73764344 - L1M4c LINE L1 -3897 2951 2717 * 3856 218 117 28 chr6 115515208 115515513 -73764041 - L1M4c LINE L1 -4926 1923 1647 2037 140 0 3 chr6 115515513 115515813 -73763741 - AluSx SINE Alu -13 299 1 3856 218 117 28 chr6 115515813 115516523 -73763031 - L1M4c LINE L1 -5202 1647 817 342 316 139 19 chr6 115516744 115516959 -73762595 + MIR SINE MIR 20 260 -2 613 222 8 8 chr6 115517364 115517490 -73762064 - FLAM_A SINE Alu -7 126 1 24 67 0 0 chr6 115517490 115517535 -73762019 + AT_rich Low_complexity Low_complexity 1 45 0 250 336 37 30 chr6 115518025 115518159 -73761395 + MIR SINE MIR 63 197 -65 216 235 44 15 chr6 115518164 115518300 -73761254 + (TA)n Simple_repeat Simple_repeat 2 141 0 275 152 90 14 chr6 115518326 115518471 -73761083 + (TA)n Simple_repeat Simple_repeat 1 156 0 334 274 122 51 chr6 115518482 115518818 -73760736 - L1ME4a LINE L1 -169 5952 5593 261 0 0 0 chr6 115519924 115519953 -73759601 + (TG)n Simple_repeat Simple_repeat 2 30 0 243 204 0 0 chr6 115521016 115521070 -73758484 + (TA)n Simple_repeat Simple_repeat 2 55 0 22 0 0 0 chr6 115522843 115522865 -73756689 + AT_rich Low_complexity Low_complexity 1 22 0 270 290 93 9 chr6 115523899 115524006 -73755548 - L2 LINE L2 -1568 1746 1631 21 0 0 0 chr6 115524585 115524606 -73754948 + AT_rich Low_complexity Low_complexity 1 21 0 195 293 69 0 chr6 115525801 115525859 -73753695 - L2 LINE L2 -74 3198 3137 * 246 373 36 0 chr6 115525854 115525964 -73753590 + MIR SINE MIR 28 141 -67 209 217 19 113 chr6 115526281 115526387 -73753167 - L2 LINE L2 -98 3215 3120 554 328 81 15 chr6 115526961 115527220 -73752334 + L2 LINE L2 2521 2796 -518 450 348 17 96 chr6 115527344 115527698 -73751856 + L2 LINE L2 2947 3272 0 1716 232 17 6 chr6 115528076 115528527 -73751027 - MER89 LTR ERV1 0 559 5 37 62 0 0 chr6 115529620 115529685 -73749869 + AT_rich Low_complexity Low_complexity 1 65 0 29 47 0 0 chr6 115532146 115532189 -73747365 + AT_rich Low_complexity Low_complexity 1 43 0 201 204 20 0 chr6 115532479 115532528 -73747026 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 30 27 0 0 chr6 115532658 115532695 -73746859 + AT_rich Low_complexity Low_complexity 1 37 0 22 80 0 0 chr6 115532947 115532997 -73746557 + AT_rich Low_complexity Low_complexity 1 50 0 181 198 45 27 chr6 115533662 115533773 -73745781 + (CATATA)n Simple_repeat Simple_repeat 1 113 0 258 105 0 0 chr6 115533782 115533820 -73745734 + (CA)n Simple_repeat Simple_repeat 1 38 0 2002 138 7 3 chr6 115534328 115534624 -73744930 + AluSx SINE Alu 1 297 -15 328 314 29 7 chr6 115535262 115535399 -73744155 + L1ME4a LINE L1 5563 5702 -419 480 305 62 11 chr6 115535617 115535794 -73743760 - MIR SINE MIR -71 191 6 277 291 35 47 chr6 115535813 115535985 -73743569 + L1ME4a LINE L1 5952 6121 0 2013 95 0 37 chr6 115537046 115537341 -73742213 + AluSc SINE Alu 1 284 -25 39 0 0 0 chr6 115537344 115537383 -73742171 + AT_rich Low_complexity Low_complexity 1 39 0 258 373 73 11 chr6 115537449 115537626 -73741928 - MER91A DNA MER1_type 0 196 9 23 54 0 0 chr6 115539553 115539590 -73739964 + AT_rich Low_complexity Low_complexity 1 37 0 212 100 25 0 chr6 115540489 115540529 -73739025 + (CAA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr6 115540604 115540625 -73738929 + AT_rich Low_complexity Low_complexity 1 21 0 207 100 0 0 chr6 115541083 115541113 -73738441 + (TTC)n Simple_repeat Simple_repeat 1 30 0 2052 106 7 0 chr6 115541113 115541388 -73738166 - AluSc SINE Alu -32 277 1 254 281 0 16 chr6 115541642 115541706 -73737848 + L2 LINE L2 3246 3308 -5 434 362 0 17 chr6 115541944 115542121 -73737433 + MER5B DNA MER1_type 2 175 -3 224 326 158 0 chr6 115542728 115542823 -73736731 - L2 LINE L2 -5 3308 3199 369 43 0 0 chr6 115542854 115542901 -73736653 + (CA)n Simple_repeat Simple_repeat 2 48 0 387 290 54 32 chr6 115542992 115543178 -73736376 - L2 LINE L2 -213 3059 2870 372 327 0 0 chr6 115543242 115543355 -73736199 - MIR SINE MIR 0 262 150 25 51 0 0 chr6 115543365 115543404 -73736150 + AT_rich Low_complexity Low_complexity 1 39 0 31 58 0 0 chr6 115543990 115544042 -73735512 + AT_rich Low_complexity Low_complexity 1 52 0 1965 99 6 53 chr6 115544447 115544509 -73735045 - L1PB1 LINE L1 0 6151 6088 1926 99 12 59 chr6 115544509 115544831 -73734723 - AluSx SINE Alu -5 307 1 1965 99 6 53 chr6 115544831 115545091 -73734463 - L1PB1 LINE L1 -63 6088 5844 192 40 0 0 chr6 115548119 115548144 -73731410 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 11204 220 41 12 chr6 115548157 115550371 -73729183 + L1PA16 LINE L1 2222 4557 -1609 186 43 0 0 chr6 115550371 115550394 -73729160 + (CAA)n Simple_repeat Simple_repeat 2 24 0 11204 220 41 12 chr6 115550394 115551501 -73728053 + L1PA16 LINE L1 4557 5631 -535 1326 163 27 31 chr6 115551501 115551785 -73727769 + L1PA16 LINE L1 5872 6164 -2 22 0 0 0 chr6 115552605 115552627 -73726927 + AT_rich Low_complexity Low_complexity 1 22 0 1867 114 0 15 chr6 115553874 115554145 -73725409 - AluSg1 SINE Alu -8 301 35 327 339 84 45 chr6 115554216 115554823 -73724731 - L1M4 LINE L1 -2166 3980 3350 1050 222 8 25 chr6 115555420 115555663 -73723891 + AluJb SINE Alu 58 296 -16 1027 245 113 98 chr6 115556002 115556111 -73723443 - HAL1 LINE L1 -477 2030 1924 2133 110 20 0 chr6 115556111 115556411 -73723143 - AluSx SINE Alu -6 306 1 1027 245 113 98 chr6 115556411 115556957 -73722597 - HAL1 LINE L1 -583 1924 1387 873 176 73 94 chr6 115556957 115557254 -73722300 + MER33 DNA MER1_type 2 304 -2281 366 91 0 0 chr6 115557254 115557309 -73722245 + (TA)n Simple_repeat Simple_repeat 2 56 0 2321 103 0 0 chr6 115557309 115557610 -73721944 - AluSg SINE Alu -9 301 1 873 176 73 94 chr6 115557610 115557641 -73721913 + MER33 DNA MER1_type 302 324 0 1027 245 113 98 chr6 115557641 115557747 -73721807 - HAL1 LINE L1 -1120 1387 1257 251 215 194 21 chr6 115557826 115557919 -73721635 + MER5B DNA MER1_type 46 154 -24 1310 193 18 4 chr6 115557926 115558206 -73721348 + L1MA9 LINE L1 6029 6312 0 1417 204 27 62 chr6 115558650 115559023 -73720531 + MER39 LTR ERV1 330 689 -18 2167 108 0 3 chr6 115559301 115559597 -73719957 - AluSq SINE Alu -16 297 3 207 0 0 0 chr6 115559693 115559716 -73719838 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 291 361 143 37 chr6 115559938 115560689 -73718865 - L2 LINE L2 -270 3002 2174 2017 104 21 3 chr6 115562016 115562305 -73717249 - AluSq SINE Alu -18 295 2 259 288 27 14 chr6 115562575 115562648 -73716906 + MIR SINE MIR 35 108 -154 23 0 0 0 chr6 115562698 115562721 -73716833 + AT_rich Low_complexity Low_complexity 1 23 0 182 338 27 14 chr6 115563131 115563205 -73716349 + L2 LINE L2 3112 3186 -86 674 243 12 12 chr6 115564126 115564299 -73715255 - MER45A DNA AcHobo -3 175 3 315 216 8 164 chr6 115564301 115564435 -73715119 + MER5B DNA MER1_type 20 132 -46 194 188 0 0 chr6 115564469 115564501 -73715053 - MER5B DNA MER1_type -143 35 4 296 379 35 30 chr6 115564517 115564686 -73714868 + L2 LINE L2 3101 3270 -2 4100 214 10 23 chr6 115565462 115565642 -73713912 - L1MB5 LINE L1 -8 6664 6483 267 31 0 0 chr6 115565642 115565674 -73713880 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1383 193 40 7 chr6 115565674 115565949 -73713605 - AluJo SINE Alu -28 284 1 4100 214 10 23 chr6 115565949 115567058 -73712496 - L1MB5 LINE L1 -187 6485 5390 2316 267 36 6 chr6 115567061 115567900 -73711654 - L1MB5 LINE L1 -2399 4245 3382 * 2732 260 56 41 chr6 115567896 115568970 -73710584 - L1MB5 LINE L1 -5395 1147 58 545 225 72 0 chr6 115568970 115569081 -73710473 + MER58B DNA MER1_type 222 340 -1 236 196 0 0 chr6 115569126 115569172 -73710382 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 234 0 0 0 chr6 115570453 115570479 -73709075 + (T)n Simple_repeat Simple_repeat 1 26 0 325 231 8 142 chr6 115570856 115570990 -73708564 + L2 LINE L2 3184 3299 -14 28 48 0 0 chr6 115571193 115571235 -73708319 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr6 115572101 115572122 -73707432 + AT_rich Low_complexity Low_complexity 1 21 0 564 241 53 72 chr6 115572561 115572768 -73706786 + MIR SINE MIR 60 262 0 207 0 0 0 chr6 115572819 115572842 -73706712 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 256 200 20 0 chr6 115573865 115573915 -73705639 + MIR SINE MIR 65 115 -147 5362 169 14 4 chr6 115573960 115574902 -73704652 + L1MC1 LINE L1 5377 6327 -6 1881 148 7 0 chr6 115574916 115575199 -73704355 - AluSx SINE Alu -27 285 1 521 347 181 11 chr6 115575384 115575733 -73703821 - L2 LINE L2 -4 3309 2902 840 343 85 28 chr6 115575823 115576171 -73703383 - L2 LINE L2 -1 3312 2985 207 0 0 0 chr6 115576171 115576194 -73703360 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 840 343 85 28 chr6 115576194 115576801 -73702753 - L2 LINE L2 -328 2985 2287 450 292 75 57 chr6 115576859 115577191 -73702363 - L2 LINE L2 -830 2484 2147 712 348 89 51 chr6 115577231 115578030 -73701524 - L2 LINE L2 -2263 1051 223 399 334 73 58 chr6 115578423 115578974 -73700580 + L2 LINE L2 2761 3313 0 2372 77 3 10 chr6 115579016 115579328 -73700226 - AluY SINE Alu -1 310 1 198 295 74 21 chr6 115579380 115579475 -73700079 + MIR SINE MIR 146 245 -17 1126 183 37 29 chr6 115580343 115580616 -73698938 - MER67C LTR ERV1 -426 284 10 3090 160 88 60 chr6 115580846 115581527 -73698027 - MER72 LTR ERV1 -22 700 1 260 346 126 22 chr6 115581682 115581864 -73697690 + MIR SINE MIR 49 249 -13 2408 166 49 23 chr6 115582407 115582877 -73696677 - LTR29 LTR ERV1 -4 618 137 345 263 0 5 chr6 115582877 115582979 -73696575 - MER34 LTR ERV1 -449 136 1 958 243 99 11 chr6 115583081 115583225 -73696329 - AluJo SINE Alu -15 287 157 180 0 0 0 chr6 115583225 115583245 -73696309 + (TTA)n Simple_repeat Simple_repeat 2 21 0 958 243 99 11 chr6 115583245 115583363 -73696191 - AluJo SINE Alu -145 157 2 309 244 70 77 chr6 115584377 115584495 -73695059 + MIR SINE MIR 65 183 -79 2801 10 0 0 chr6 115584495 115584804 -73694750 + AluYb8 SINE Alu 1 309 -9 309 244 70 77 chr6 115584804 115584841 -73694713 + MIR SINE MIR 183 219 -43 219 88 0 0 chr6 115585276 115585310 -73694244 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2204 121 0 6 chr6 115586244 115586558 -73692996 + AluSx SINE Alu 1 312 0 475 92 1 26 chr6 115587007 115587085 -73692469 + L1MA1 LINE L1 6204 6281 -22 270 257 0 1 chr6 115587158 115587267 -73692287 - L1MC/D LINE L1 -725 5575 5493 385 304 142 26 chr6 115587414 115587540 -73692014 - L1MC/D LINE L1 -816 5330 5220 261 57 0 0 chr6 115587540 115587575 -73691979 + (TG)n Simple_repeat Simple_repeat 2 36 0 385 304 142 26 chr6 115587575 115587751 -73691803 - L1MC/D LINE L1 -926 5220 4993 44 35 0 0 chr6 115588370 115588428 -73691126 + AT_rich Low_complexity Low_complexity 1 58 0 463 189 105 105 chr6 115590265 115590408 -73689146 - LTR45 LTR ERV1 -2 523 381 * 1345 193 4 0 chr6 115590406 115590639 -73688915 - LTR45 LTR ERV1 -291 234 1 279 314 57 0 chr6 115590918 115590988 -73688566 + L2 LINE L2 3199 3272 0 253 323 63 44 chr6 115591076 115591234 -73688320 + L2 LINE L2 3150 3310 -3 25 0 0 0 chr6 115591973 115591998 -73687556 + AT_rich Low_complexity Low_complexity 1 25 0 4155 156 16 15 chr6 115592015 115592753 -73686801 - L1PA16 LINE L1 -3 6163 5425 2394 134 11 3 chr6 115592869 115593241 -73686313 - THE1C LTR MaLR 0 375 1 10327 40 1 0 chr6 115593738 115595811 -73683743 - L1PA5 LINE L1 -3 6151 4077 264 77 0 0 chr6 115596633 115596672 -73682882 + (TG)n Simple_repeat Simple_repeat 2 40 0 242 181 97 14 chr6 115596813 115596885 -73682669 - MER116 DNA Mariner 0 80 3 318 26 0 0 chr6 115597120 115597159 -73682395 + (CA)n Simple_repeat Simple_repeat 2 40 0 292 260 24 31 chr6 115597788 115597879 -73681675 + (TATATG)n Simple_repeat Simple_repeat 6 97 -34 1698 169 48 12 chr6 115597879 115598210 -73681344 - MER2 DNA MER2_type 0 344 2 292 260 24 31 chr6 115598210 115598245 -73681309 + (TATATG)n Simple_repeat Simple_repeat 97 131 0 556 326 88 0 chr6 115598524 115598710 -73680844 + MIR SINE MIR 29 238 -24 558 0 0 0 chr6 115598710 115598772 -73680782 + (TTATA)n Simple_repeat Simple_repeat 3 64 0 556 326 88 0 chr6 115598772 115598800 -73680754 + MIR SINE MIR 238 262 0 827 344 33 13 chr6 115599513 115599905 -73679649 - MLT1I LTR MaLR 0 409 10 224 396 92 15 chr6 115599910 115600236 -73679318 + L2 LINE L2 471 821 -2493 354 296 0 11 chr6 115600567 115600655 -73678899 + HERVL40 LTR ERVL 2936 3022 -2508 522 242 89 8 chr6 115600805 115600929 -73678625 + HERVL40 LTR ERVL 3229 3362 -2168 22 0 0 0 chr6 115601510 115601532 -73678022 + AT_rich Low_complexity Low_complexity 1 22 0 1032 202 0 29 chr6 115602288 115602520 -73677034 + AluJo SINE Alu 85 310 0 1949 153 42 28 chr6 115602521 115602880 -73676674 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr6 115603431 115603453 -73676101 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 115603644 115603666 -73675888 + AT_rich Low_complexity Low_complexity 1 22 0 320 0 25 0 chr6 115603929 115603969 -73675585 + (TAA)n Simple_repeat Simple_repeat 2 42 0 921 304 105 40 chr6 115604012 115604724 -73674830 - L2 LINE L2 -1 3312 2558 230 328 0 0 chr6 115605434 115605495 -73674059 - L2 LINE L2 -8 3264 3204 209 338 53 15 chr6 115606126 115606259 -73673295 + MIR SINE MIR 125 262 0 2744 147 23 60 chr6 115606380 115606979 -73672575 - L1MC2 LINE L1 -6 6338 5762 26 0 0 0 chr6 115607126 115607152 -73672402 + AT_rich Low_complexity Low_complexity 1 26 0 714 165 13 122 chr6 115607276 115607460 -73672094 - L1MA8 LINE L1 -163 6128 5972 2156 101 3 16 chr6 115607460 115607767 -73671787 - AluSc SINE Alu -6 303 1 714 165 13 122 chr6 115607767 115607812 -73671742 - L1MA8 LINE L1 -319 5972 5924 833 143 37 0 chr6 115607814 115607975 -73671579 + L1MA8 LINE L1 6125 6291 0 2027 147 85 20 chr6 115608174 115608576 -73670978 - MSTA LTR MaLR 0 428 1 369 365 66 5 chr6 115608869 115609080 -73670474 + MIR SINE MIR 39 262 0 29 47 0 0 chr6 115609899 115609942 -73669612 + AT_rich Low_complexity Low_complexity 1 43 0 237 132 0 0 chr6 115610222 115610260 -73669294 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 698 185 15 8 chr6 115611092 115611222 -73668332 + AluJo SINE Alu 6 136 -176 28 0 0 0 chr6 115611240 115611268 -73668286 + AT_rich Low_complexity Low_complexity 1 28 0 258 32 0 0 chr6 115611613 115611644 -73667910 + (TA)n Simple_repeat Simple_repeat 1 31 0 2331 90 0 3 chr6 115611876 115612177 -73667377 + AluSc SINE Alu 1 300 -9 203 360 35 0 chr6 115614378 115614464 -73665090 - L2 LINE L2 0 3313 3225 29 84 0 0 chr6 115614730 115614801 -73664753 + AT_rich Low_complexity Low_complexity 1 71 0 22 0 0 0 chr6 115615305 115615327 -73664227 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr6 115616695 115616725 -73662829 + AT_rich Low_complexity Low_complexity 1 30 0 417 70 0 0 chr6 115617644 115617701 -73661853 + (CA)n Simple_repeat Simple_repeat 2 58 0 205 211 0 0 chr6 115617863 115617901 -73661653 + T-rich Low_complexity Low_complexity 1 38 0 25 51 0 0 chr6 115618231 115618270 -73661284 + AT_rich Low_complexity Low_complexity 1 39 0 206 121 0 0 chr6 115619730 115619763 -73659791 + (T)n Simple_repeat Simple_repeat 1 33 0 2052 61 4 47 chr6 115620829 115621107 -73658447 + AluSp SINE Alu 1 266 -47 27 0 0 0 chr6 115621218 115621245 -73658309 + AT_rich Low_complexity Low_complexity 1 27 0 755 266 35 5 chr6 115622700 115622903 -73656651 + MER63A DNA MER1_type 1 209 -1 333 328 81 62 chr6 115623614 115623873 -73655681 - MLT1J LTR MaLR -140 371 108 485 243 74 0 chr6 115624560 115624708 -73654846 - MER103 DNA DNA -3 163 5 23 78 0 0 chr6 115625094 115625145 -73654409 + AT_rich Low_complexity Low_complexity 1 51 0 228 35 0 0 chr6 115627013 115627042 -73652512 + (TG)n Simple_repeat Simple_repeat 2 30 0 186 395 70 0 chr6 115628070 115628156 -73651398 - MIR SINE MIR -62 146 55 26 74 0 0 chr6 115628790 115628844 -73650710 + AT_rich Low_complexity Low_complexity 1 54 0 449 71 24 94 chr6 115628900 115628985 -73650569 - MADE1 DNA Mariner -1 79 1 21 0 0 0 chr6 115629169 115629190 -73650364 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 115629272 115629293 -73650261 + AT_rich Low_complexity Low_complexity 1 21 0 269 321 57 0 chr6 115629534 115629640 -73649914 - MIR SINE MIR -59 149 38 26 0 0 0 chr6 115629780 115629806 -73649748 + AT_rich Low_complexity Low_complexity 1 26 0 183 80 0 0 chr6 115630018 115630043 -73649511 + (T)n Simple_repeat Simple_repeat 1 25 0 207 315 37 0 chr6 115630344 115630452 -73649102 + (TA)n Simple_repeat Simple_repeat 2 113 0 27 29 0 0 chr6 115630532 115630566 -73648988 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr6 115631306 115631334 -73648220 + AT_rich Low_complexity Low_complexity 1 28 0 278 50 25 0 chr6 115631478 115631518 -73648036 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr6 115632030 115632059 -73647495 + AT_rich Low_complexity Low_complexity 1 29 0 225 261 171 0 chr6 115632381 115632469 -73647085 - MIR3 SINE MIR -23 185 83 501 58 0 0 chr6 115632690 115632759 -73646795 + (CA)n Simple_repeat Simple_repeat 2 70 0 28 48 0 0 chr6 115636801 115636843 -73642711 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr6 115639113 115639141 -73640413 + AT_rich Low_complexity Low_complexity 1 28 0 287 245 71 0 chr6 115640862 115640960 -73638594 - MLT1J LTR MaLR -29 482 378 183 320 97 88 chr6 115641515 115641846 -73637708 - L2 LINE L2 -559 2755 2422 778 94 0 16 chr6 115642701 115642829 -73636725 + (TTCC)n Simple_repeat Simple_repeat 4 129 0 196 349 0 23 chr6 115643265 115643351 -73636203 - MIR SINE MIR -65 197 114 2088 110 3 16 chr6 115644285 115644594 -73634960 + AluSx SINE Alu 1 305 -7 30 69 0 0 chr6 115646648 115646706 -73632848 + AT_rich Low_complexity Low_complexity 1 58 0 216 0 0 0 chr6 115646842 115646866 -73632688 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr6 115647130 115647151 -73632403 + AT_rich Low_complexity Low_complexity 1 21 0 203 59 0 29 chr6 115647580 115647614 -73631940 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 21 36 0 0 chr6 115648477 115648505 -73631049 + AT_rich Low_complexity Low_complexity 1 28 0 21 82 0 0 chr6 115650118 115650167 -73629387 + AT_rich Low_complexity Low_complexity 1 49 0 29 28 0 0 chr6 115650345 115650381 -73629173 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr6 115650429 115650453 -73629101 + AT_rich Low_complexity Low_complexity 1 24 0 1530 199 0 3 chr6 115650706 115651020 -73628534 + AluJb SINE Alu 1 313 0 24 32 0 0 chr6 115651316 115651347 -73628207 + AT_rich Low_complexity Low_complexity 1 31 0 195 204 0 0 chr6 115653955 115653999 -73625555 + CT-rich Low_complexity Low_complexity 5 48 0 206 207 17 0 chr6 115654611 115654669 -73624885 + CT-rich Low_complexity Low_complexity 2 60 0 435 146 19 68 chr6 115654710 115654813 -73624741 - MIR SINE MIR -68 194 97 21 0 0 0 chr6 115659300 115659321 -73620233 + AT_rich Low_complexity Low_complexity 1 21 0 228 176 0 20 chr6 115660294 115660345 -73619209 - L1MC1 LINE L1 0 6333 6284 23 0 0 0 chr6 115661109 115661132 -73618422 + AT_rich Low_complexity Low_complexity 1 23 0 6980 186 56 101 chr6 115661446 115662973 -73616581 + Charlie5 DNA MER1_type 30 1625 -999 8987 142 21 39 chr6 115662973 115664579 -73614975 + MSTA-int LTR MaLR 3 1580 0 1694 161 156 11 chr6 115664579 115664951 -73614603 + MSTA LTR MaLR 1 426 -2 6980 186 56 101 chr6 115664951 115665975 -73613579 + Charlie5 DNA MER1_type 1623 2466 -158 343 354 17 27 chr6 115665975 115666215 -73613339 + L2 LINE L2 2314 2595 -719 226 280 25 59 chr6 115666398 115666516 -73613038 + L2 LINE L2 3112 3225 -88 875 189 38 6 chr6 115666986 115667145 -73612409 + AluJb SINE Alu 87 250 -62 1425 217 32 58 chr6 115667444 115667830 -73611724 - MER67C LTR ERV1 -243 271 1 410 180 20 7 chr6 115669091 115669241 -73610313 + (TA)n Simple_repeat Simple_repeat 2 153 0 742 171 0 50 chr6 115669281 115669421 -73610133 - FLAM_C SINE Alu 0 133 1 4209 68 25 5 chr6 115670017 115670588 -73608966 - L1PA7 LINE L1 -2 6152 5571 192 185 0 0 chr6 115671328 115671382 -73608172 + T-rich Low_complexity Low_complexity 1 54 0 2732 185 32 49 chr6 115672123 115672195 -73607359 - L1MD1 LINE L1 -8 6234 6162 2347 118 19 25 chr6 115672195 115672561 -73606993 + THE1B LTR MaLR 1 364 0 2732 185 32 49 chr6 115672561 115673141 -73606413 - L1MD1 LINE L1 -80 6162 5593 5539 244 48 15 chr6 115673148 115673253 -73606301 - L1MB8 LINE L1 -5 6173 6073 2087 77 0 0 chr6 115673253 115673514 -73606040 - AluY SINE Alu -16 295 35 5539 244 48 15 chr6 115673514 115675996 -73603558 - L1MB8 LINE L1 -105 6073 3502 652 223 0 36 chr6 115676018 115676157 -73603397 + FLAM_C SINE Alu 3 136 -7 360 0 0 0 chr6 115676223 115676263 -73603291 + (TC)n Simple_repeat Simple_repeat 1 40 0 1178 268 91 7 chr6 115676267 115676850 -73602704 - L1MB8 LINE L1 -2698 3448 2817 343 244 170 7 chr6 115676889 115677024 -73602530 - L1M4 LINE L1 -1473 4673 4517 2164 137 11 3 chr6 115677035 115677400 -73602154 - L1PB4 LINE L1 -4 6854 6487 281 241 37 0 chr6 115677401 115677509 -73602045 + (TA)n Simple_repeat Simple_repeat 1 112 0 8557 199 33 34 chr6 115677509 115678111 -73601443 - L1PB4 LINE L1 -365 6493 5892 269 26 0 26 chr6 115678111 115678150 -73601404 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 8557 199 33 34 chr6 115678150 115678900 -73600654 - L1PB4 LINE L1 -966 5892 5142 270 0 0 0 chr6 115678900 115678930 -73600624 + (TG)n Simple_repeat Simple_repeat 1 30 0 8557 199 33 34 chr6 115678930 115680365 -73599189 - L1PB4 LINE L1 -1716 5142 3716 2529 238 51 30 chr6 115680379 115681407 -73598147 - L1PB4 LINE L1 -4375 2473 1347 710 333 100 7 chr6 115681399 115681836 -73597718 - L1PA15-16 LINE L1 -5280 923 353 * 315 335 30 40 chr6 115681945 115682246 -73597308 - L1PA15-16 LINE L1 -5831 373 76 436 350 71 45 chr6 115682479 115682984 -73596570 - L1PB4 LINE L1 -6322 527 10 1690 269 43 41 chr6 115682999 115683915 -73595639 - L1M4 LINE L1 -3317 3640 2707 1384 92 0 0 chr6 115683932 115684116 -73595438 - AluY SINE Alu 0 311 128 252 184 0 0 chr6 115684117 115684166 -73595388 + T-rich Low_complexity Low_complexity 1 49 0 1119 53 0 0 chr6 115684166 115684298 -73595256 - AluY SINE Alu -179 132 1 1076 222 10 0 chr6 115684443 115684646 -73594908 - L1M4 LINE L1 -6007 852 648 440 246 39 8 chr6 115684638 115684768 -73594786 - L1M4 LINE L1 -6626 233 100 * 271 251 28 28 chr6 115684768 115684947 -73594607 + (TA)n Simple_repeat Simple_repeat 1 179 0 4746 171 4 11 chr6 115685037 115685836 -73593718 + MER54B LTR ERVL 1 793 0 184 341 24 24 chr6 115687204 115687289 -73592265 + L2 LINE L2 3227 3311 -2 31 68 0 0 chr6 115687739 115687798 -73591756 + AT_rich Low_complexity Low_complexity 1 59 0 583 200 131 30 chr6 115688761 115689085 -73590469 - LTR37A LTR ERV1 -3 464 116 379 291 87 49 chr6 115689229 115689494 -73590060 + Charlie2 DNA MER1_type 92 366 -2496 979 237 98 18 chr6 115689507 115689996 -73589558 + Charlie2 DNA MER1_type 2245 2772 -90 21 0 0 0 chr6 115690793 115690814 -73588740 + AT_rich Low_complexity Low_complexity 1 21 0 2109 197 10 17 chr6 115690917 115691333 -73588221 - MER66B LTR ERV1 0 486 74 287 181 12 60 chr6 115691399 115691482 -73588072 - MER66A LTR ERV1 -399 79 1 5246 163 39 30 chr6 115692191 115693679 -73585875 - L1PA4 LINE L1 0 6157 4667 371 344 13 25 chr6 115693811 115693968 -73585586 + MER5A DNA MER1_type 30 184 -5 279 237 0 41 chr6 115694455 115694552 -73585002 - MER103 DNA DNA -10 156 64 291 307 47 24 chr6 115694896 115695023 -73584531 - L2 LINE L2 -5 3308 3179 1876 187 39 8 chr6 115695087 115695472 -73584082 - MLT2C1 LTR ERVL 0 397 1 752 313 124 14 chr6 115695791 115696219 -73583335 - L2 LINE L2 -942 2372 1898 640 142 8 8 chr6 115696410 115696537 -73583017 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 1571 170 35 17 chr6 115697063 115697351 -73582203 + AluJo SINE Alu 3 295 -17 441 0 0 0 chr6 115697878 115697927 -73581627 + (TTATG)n Simple_repeat Simple_repeat 1 49 0 1144 301 36 25 chr6 115697927 115698372 -73581182 - LTR16B LTR ERVL -6 458 9 391 196 82 0 chr6 115699806 115699903 -73579651 - L2 LINE L2 -2399 915 811 411 326 179 19 chr6 115699907 115700214 -73579340 - L2 LINE L2 -2751 563 208 183 371 0 0 chr6 115700443 115700505 -73579049 - L2 LINE L2 -1 3271 3210 201 74 0 0 chr6 115701530 115701557 -73577997 + (T)n Simple_repeat Simple_repeat 1 27 0 30 45 0 0 chr6 115704777 115704821 -73574733 + AT_rich Low_complexity Low_complexity 1 44 0 181 191 0 43 chr6 115705120 115705167 -73574387 + MIR3 SINE MIR 149 193 -15 378 0 0 0 chr6 115705261 115705303 -73574251 + (CA)n Simple_repeat Simple_repeat 2 43 0 1465 208 0 34 chr6 115707504 115707826 -73571728 + AluJo SINE Alu 1 311 -1 40 73 0 0 chr6 115708288 115708370 -73571184 + AT_rich Low_complexity Low_complexity 1 82 0 387 0 0 0 chr6 115708737 115708780 -73570774 + (TG)n Simple_repeat Simple_repeat 1 43 0 249 33 0 0 chr6 115708779 115708809 -73570745 + (CG)n Simple_repeat Simple_repeat 2 31 0 * 691 247 139 5 chr6 115709097 115709291 -73570263 + MIR SINE MIR 2 221 -41 196 237 0 0 chr6 115709546 115709584 -73569970 + MIR SINE MIR 211 248 -14 25 75 0 0 chr6 115710497 115710550 -73569004 + AT_rich Low_complexity Low_complexity 1 53 0 650 319 20 32 chr6 115710825 115711073 -73568481 - MIR SINE MIR -13 249 5 374 313 222 5 chr6 115711842 115712040 -73567514 - MIR SINE MIR -14 248 8 27 29 0 0 chr6 115712166 115712200 -73567354 + AT_rich Low_complexity Low_complexity 1 34 0 192 153 17 34 chr6 115713823 115713882 -73565672 + GA-rich Low_complexity Low_complexity 3 60 0 444 233 38 3 chr6 115714410 115714751 -73564803 + (TA)n Simple_repeat Simple_repeat 1 353 0 254 365 52 0 chr6 115715236 115715351 -73564203 - MIR SINE MIR -69 139 19 356 318 39 0 chr6 115715365 115715494 -73564060 - MER94 DNA DNA 0 134 1 26 50 0 0 chr6 115717891 115717931 -73561623 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr6 115718067 115718095 -73561459 + AT_rich Low_complexity Low_complexity 1 28 0 204 102 102 0 chr6 115718309 115718358 -73561196 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 734 264 11 62 chr6 115718583 115718856 -73560698 - L1ME1 LINE L1 -5 6161 5903 555 176 0 20 chr6 115718860 115718962 -73560592 - Tigger7 DNA MER2_type -2365 122 23 4025 271 84 23 chr6 115719041 115719448 -73560106 - L1ME1 LINE L1 -920 5226 4845 2044 104 0 0 chr6 115719448 115719726 -73559828 - AluSx SINE Alu 0 312 35 4025 271 84 23 chr6 115719726 115720923 -73558631 - L1ME1 LINE L1 -1301 4845 3471 1258 177 62 0 chr6 115720923 115721183 -73558371 - L1PA16 LINE L1 0 6166 5891 4025 271 84 23 chr6 115721183 115721608 -73557946 - L1ME1 LINE L1 -2675 3471 3073 3608 57 0 0 chr6 115721835 115722291 -73557263 - L1PA8 LINE L1 0 6172 5717 402 266 49 11 chr6 115722380 115722564 -73556990 - L1ME1 LINE L1 -3155 2991 2801 22 0 0 0 chr6 115722614 115722636 -73556918 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 115722772 115722795 -73556759 + AT_rich Low_complexity Low_complexity 1 23 0 300 111 0 0 chr6 115722907 115722952 -73556602 + (TG)n Simple_repeat Simple_repeat 2 46 0 557 177 23 17 chr6 115722952 115723127 -73556427 + (TA)n Simple_repeat Simple_repeat 2 177 0 450 299 109 64 chr6 115723133 115723819 -73555735 - L1ME1 LINE L1 -3310 2836 2120 205 275 0 38 chr6 115723870 115723950 -73555604 + (TA)n Simple_repeat Simple_repeat 1 77 0 346 371 47 0 chr6 115724270 115724483 -73555071 - HAL1 LINE L1 -854 1653 1431 200 292 0 21 chr6 115724747 115724843 -73554711 + T-rich Low_complexity Low_complexity 2 95 0 192 77 0 0 chr6 115725506 115725532 -73554022 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 290 272 26 0 chr6 115725786 115725900 -73553654 + (TA)n Simple_repeat Simple_repeat 1 117 0 1633 185 43 56 chr6 115726397 115726792 -73552762 - MLT1B LTR MaLR 0 390 1 22 56 0 0 chr6 115726855 115726891 -73552663 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr6 115727015 115727038 -73552516 + (TA)n Simple_repeat Simple_repeat 2 24 0 1554 183 69 0 chr6 115727038 115727312 -73552242 - AluJb SINE Alu -17 295 3 180 324 14 42 chr6 115727658 115727729 -73551825 - L2 LINE L2 -17 3296 3228 180 0 0 0 chr6 115728691 115728711 -73550843 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4778 215 40 47 chr6 115730666 115731020 -73548534 - L1MC1 LINE L1 -6 6607 6252 2006 120 7 13 chr6 115731020 115731329 -73548225 - AluSc SINE Alu -2 307 1 4778 215 40 47 chr6 115731329 115732218 -73547336 - L1MC1 LINE L1 -361 6252 5395 2392 67 0 13 chr6 115732218 115732533 -73547021 - AluY SINE Alu 0 311 1 4778 215 40 47 chr6 115732533 115733379 -73546175 - L1MC1 LINE L1 -1218 5395 4545 12632 194 15 15 chr6 115733386 115736110 -73543444 - L1P LINE L1 -1298 4848 2124 6577 183 22 54 chr6 115736107 115737106 -73542448 + L1PA13 LINE L1 1076 2030 -4767 * 652 13 0 0 chr6 115737106 115737184 -73542370 + L1PA3 LINE L1 6073 6150 -5 6577 183 22 54 chr6 115737184 115737816 -73541738 + L1PA13 LINE L1 2030 2681 -4116 933 165 71 42 chr6 115737898 115738110 -73541444 - THE1C LTR MaLR -157 218 1 4886 191 107 55 chr6 115738111 115739458 -73540096 - L1MC1 LINE L1 -4982 1444 28 29 0 0 0 chr6 115739591 115739620 -73539934 + AT_rich Low_complexity Low_complexity 1 29 0 2601 168 17 0 chr6 115740884 115741361 -73538193 - MER31A LTR ERV1 0 485 1 33 0 0 0 chr6 115742664 115742697 -73536857 + AT_rich Low_complexity Low_complexity 1 33 0 276 30 0 0 chr6 115742780 115742813 -73536741 + (CA)n Simple_repeat Simple_repeat 2 34 0 24 0 0 0 chr6 115742815 115742839 -73536715 + AT_rich Low_complexity Low_complexity 1 24 0 361 234 0 0 chr6 115743114 115743191 -73536363 + AluJ/FRAM SINE Alu 224 300 -2 29 0 0 0 chr6 115743735 115743764 -73535790 + AT_rich Low_complexity Low_complexity 1 29 0 414 150 38 38 chr6 115745036 115745116 -73534438 - MER63 DNA MER1_type -130 706 1 22 35 0 0 chr6 115745352 115745381 -73534173 + AT_rich Low_complexity Low_complexity 1 29 0 331 198 30 0 chr6 115745507 115745608 -73533946 + L1MA4 LINE L1 6197 6300 0 391 403 0 0 chr6 115745650 115745799 -73533755 - MIR3 SINE MIR -27 181 33 781 310 41 59 chr6 115745857 115746244 -73533310 - L2 LINE L2 -4 3309 2930 198 383 0 28 chr6 115746368 115746475 -73533079 + L2 LINE L2 3153 3256 -16 441 81 0 0 chr6 115746740 115746802 -73532752 + (TA)n Simple_repeat Simple_repeat 2 63 0 22 0 0 0 chr6 115748815 115748837 -73530717 + AT_rich Low_complexity Low_complexity 1 22 0 265 132 0 147 chr6 115750409 115750477 -73529077 - L1MA9 LINE L1 0 6312 6255 598 173 107 13 chr6 115750571 115750721 -73528833 - L1MA9 LINE L1 -74 6238 6075 * 939 152 13 6 chr6 115750712 115750870 -73528684 + L1MA9 LINE L1 5865 6023 -289 625 341 134 31 chr6 115750885 115751723 -73527831 + L2 LINE L2 1605 2554 -760 468 0 0 0 chr6 115751723 115751775 -73527779 + (CA)n Simple_repeat Simple_repeat 2 53 0 625 341 134 31 chr6 115751775 115751883 -73527671 + L2 LINE L2 2554 2649 -665 36 19 0 19 chr6 115752078 115752119 -73527435 + AT_rich Low_complexity Low_complexity 1 42 -11 2173 134 27 16 chr6 115752119 115752491 -73527063 - L1PA16 LINE L1 -9 6157 5782 36 19 0 19 chr6 115752491 115752503 -73527051 + AT_rich Low_complexity Low_complexity 42 53 0 1489 204 88 41 chr6 115752517 115753040 -73526514 - MER67C LTR ERV1 0 514 61 596 281 59 5 chr6 115753401 115753604 -73525950 - HAL1 LINE L1 -1601 906 693 613 350 45 0 chr6 115753611 115753834 -73525720 + MIR SINE MIR 4 236 -26 21 36 0 0 chr6 115753853 115753881 -73525673 + AT_rich Low_complexity Low_complexity 1 28 0 363 318 132 19 chr6 115753969 115754227 -73525327 - HAL1 LINE L1 -1954 553 267 371 183 0 11 chr6 115754672 115754752 -73524802 + AluS SINE Alu 1 57 -246 22 35 0 0 chr6 115755740 115755769 -73523785 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr6 115755840 115755861 -73523693 + (TA)n Simple_repeat Simple_repeat 2 22 0 344 239 75 110 chr6 115756687 115756877 -73522677 - MER97c DNA MER1_type? 0 1090 895 279 0 0 0 chr6 115756877 115756908 -73522646 + (CA)n Simple_repeat Simple_repeat 2 32 0 344 239 75 110 chr6 115756908 115756941 -73522613 - MER97c DNA MER1_type? -195 895 862 1118 171 98 154 chr6 115756941 115757473 -73522081 + MLT1D LTR MaLR 1 502 -3 344 239 75 110 chr6 115757473 115757583 -73521971 - MER97c DNA MER1_type? -228 862 768 30 0 0 0 chr6 115757689 115757719 -73521835 + AT_rich Low_complexity Low_complexity 1 30 0 1119 243 108 22 chr6 115757874 115758236 -73521318 - MER97a DNA MER1_type? -498 396 4 234 342 125 8 chr6 115758654 115758774 -73520780 + MIR3 SINE MIR 54 187 -21 22 0 0 0 chr6 115760857 115760879 -73518675 + AT_rich Low_complexity Low_complexity 1 22 0 276 349 96 19 chr6 115762204 115762413 -73517141 + MIR SINE MIR 28 252 -10 28 0 0 0 chr6 115763787 115763815 -73515739 + AT_rich Low_complexity Low_complexity 1 28 0 2882 186 75 11 chr6 115763825 115764511 -73515043 - L1MA7 LINE L1 -2 6166 5505 1103 196 10 0 chr6 115764511 115764710 -73514844 + THE1A LTR MaLR 155 355 0 2220 120 23 6 chr6 115765014 115765363 -73514191 - THE1A LTR MaLR 0 355 1 251 324 29 0 chr6 115765761 115765829 -73513725 - L2 LINE L2 -49 3223 3154 784 195 39 1 chr6 115766244 115766452 -73513102 + L1MC/D LINE L1 5218 5434 -743 1405 239 72 17 chr6 115766462 115766963 -73512591 + L1M2 LINE L1 2795 3326 -3522 1661 180 145 11 chr6 115766963 115767336 -73512218 + MSTA LTR MaLR 1 423 -5 2553 227 42 3 chr6 115767352 115768013 -73511541 + L1M2 LINE L1 3333 4019 -2829 * 3762 192 40 21 chr6 115768005 115768114 -73511440 + L1M2 LINE L1 5152 5257 -1705 2193 116 0 3 chr6 115768114 115768416 -73511138 + AluSg SINE Alu 1 301 -9 3762 192 40 21 chr6 115768416 115769351 -73510203 + L1M2 LINE L1 5257 6206 -756 443 254 5 78 chr6 115770892 115771020 -73508534 + GA-rich Low_complexity Low_complexity 2 113 -67 2063 95 24 7 chr6 115771020 115771314 -73508240 + AluSq SINE Alu 3 301 -12 443 254 5 78 chr6 115771314 115771378 -73508176 + GA-rich Low_complexity Low_complexity 113 180 0 311 221 21 0 chr6 115771399 115771494 -73508060 + GA-rich Low_complexity Low_complexity 1 97 0 588 29 0 0 chr6 115771890 115771960 -73507594 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 22 0 0 0 chr6 115772185 115772207 -73507347 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 115773419 115773441 -73506113 + AT_rich Low_complexity Low_complexity 1 22 0 1544 147 66 4 chr6 115773452 115773724 -73505830 + AluSx SINE Alu 3 291 -21 291 54 0 0 chr6 115773738 115773775 -73505779 + (CA)n Simple_repeat Simple_repeat 2 38 0 264 59 0 0 chr6 115774348 115774382 -73505172 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 23 33 0 0 chr6 115776423 115776453 -73503101 + AT_rich Low_complexity Low_complexity 1 30 0 203 359 43 8 chr6 115778305 115778422 -73501132 + L2 LINE L2 2765 2885 -429 372 133 0 0 chr6 115778973 115779033 -73500521 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 25 0 0 0 chr6 115779621 115779646 -73499908 + AT_rich Low_complexity Low_complexity 1 25 0 30 45 0 0 chr6 115780285 115780329 -73499225 + AT_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr6 115780644 115780673 -73498881 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr6 115781852 115781879 -73497675 + AT_rich Low_complexity Low_complexity 1 27 0 224 281 25 25 chr6 115781926 115782047 -73497507 - MIR SINE MIR -56 206 86 221 258 28 124 chr6 115782272 115782450 -73497104 + MIR SINE MIR 82 242 -20 22 35 0 0 chr6 115782450 115782479 -73497075 + AT_rich Low_complexity Low_complexity 1 29 0 200 350 160 10 chr6 115783049 115783149 -73496405 + MIR SINE MIR 27 141 -67 679 160 23 12 chr6 115784890 115785155 -73494399 + CT-rich Low_complexity Low_complexity 1 268 0 231 88 0 0 chr6 115786518 115786552 -73493002 + (CAT)n Simple_repeat Simple_repeat 3 36 0 31 26 0 0 chr6 115786767 115786805 -73492749 + AT_rich Low_complexity Low_complexity 1 38 0 235 335 92 35 chr6 115787436 115787663 -73491891 - L2 LINE L2 -600 2714 2475 209 250 0 0 chr6 115787646 115787694 -73491860 + MIR SINE MIR 83 130 -132 * 1065 191 56 0 chr6 115787771 115788022 -73491532 - L1MA8 LINE L1 -4 6287 6023 201 171 0 0 chr6 115789759 115789794 -73489760 + T-rich Low_complexity Low_complexity 1 35 0 396 0 0 0 chr6 115789942 115789986 -73489568 + (TAA)n Simple_repeat Simple_repeat 2 45 0 879 287 115 52 chr6 115792816 115793493 -73486061 - HAL1 LINE L1 -628 1879 1160 1014 289 48 63 chr6 115793558 115794116 -73485438 - HAL1 LINE L1 -1486 1021 472 335 283 20 0 chr6 115794237 115794336 -73485218 - HAL1 LINE L1 -2206 301 201 2433 142 30 30 chr6 115794347 115794813 -73484741 - LTR10A LTR ERV1 -99 510 45 514 301 67 0 chr6 115794814 115795007 -73484547 - HAL1 LINE L1 -2298 209 4 943 312 36 3 chr6 115795787 115796117 -73483437 - HAL1 LINE L1 -2163 344 4 563 301 18 0 chr6 115796345 115796511 -73483043 - MLT1J LTR MaLR -337 174 6 270 375 21 10 chr6 115796923 115797019 -73482535 - L2 LINE L2 -36 3236 3140 2052 108 10 0 chr6 115797087 115797375 -73482179 + AluSx SINE Alu 6 296 -16 439 344 68 48 chr6 115797969 115798444 -73481110 - L2 LINE L2 -271 3042 2554 399 300 150 6 chr6 115798544 115798724 -73480830 - MIR SINE MIR -49 213 8 230 292 41 41 chr6 115798754 115798889 -73480665 - MLT1J2 LTR MaLR -50 400 266 788 168 0 0 chr6 115800351 115800476 -73479078 - FLAM_C SINE Alu -8 125 1 203 147 0 0 chr6 115800498 115800532 -73479022 + (CCA)n Simple_repeat Simple_repeat 1 34 0 297 290 89 0 chr6 115801288 115801457 -73478097 - L1M3 LINE L1 -733 5438 5255 349 274 0 0 chr6 115801515 115801588 -73477966 + Tigger3(Golem) DNA MER2_type 4 76 -2953 632 181 0 125 chr6 115801590 115801750 -73477804 + Tigger3(Golem) DNA MER2_type 2899 3038 0 349 247 84 63 chr6 115801754 115801944 -73477610 - L1M3 LINE L1 -947 5199 5006 461 292 57 8 chr6 115802561 115802825 -73476729 - L1M3 LINE L1 -1818 4328 4052 1953 147 3 19 chr6 115804316 115804629 -73474925 - AluSx SINE Alu -2 310 3 296 380 42 19 chr6 115804929 115805142 -73474412 - L2 LINE L2 -421 2893 2676 187 359 58 32 chr6 115805758 115805914 -73473640 + L2 LINE L2 2148 2307 -1007 227 172 0 35 chr6 115806571 115806629 -73472925 + GA-rich Low_complexity Low_complexity 4 59 0 214 213 66 33 chr6 115806787 115806848 -73472706 - L2 LINE L2 -832 2482 2420 186 391 75 15 chr6 115807142 115807275 -73472279 + L2 LINE L2 3132 3272 0 841 216 5 34 chr6 115807571 115807775 -73471779 + MER3 DNA MER1_type 1 198 -11 42387 38 22 1 chr6 115808844 115814873 -73464681 + L1PA3 LINE L1 1 6155 0 28 0 0 0 chr6 115817267 115817295 -73462259 + AT_rich Low_complexity Low_complexity 1 28 0 280 216 118 0 chr6 115817658 115817760 -73461794 + L1M4 LINE L1 2169 2282 -3864 1633 182 0 4 chr6 115817779 115818054 -73461500 + AluSx SINE Alu 3 276 -36 14982 107 10 3 chr6 115818067 115821105 -73458449 - L1PA7 LINE L1 -5 6149 3074 3404 119 10 0 chr6 115821107 115821594 -73457960 + L1P3 LINE L1 8 499 -5962 187 172 0 62 chr6 115821651 115821715 -73457839 + (TA)n Simple_repeat Simple_repeat 2 61 0 279 266 75 52 chr6 115821717 115822143 -73457411 + L1M4 LINE L1 2320 2734 -3412 2276 160 46 7 chr6 115822143 115822555 -73456999 - MSTA LTR MaLR 0 428 1 279 266 75 52 chr6 115822555 115823070 -73456484 + L1M4 LINE L1 2734 3360 -2786 726 83 0 19 chr6 115823071 115823179 -73456375 + LTR7 LTR ERV1 343 448 -2 16089 104 21 9 chr6 115823181 115826016 -73453538 + HERVH LTR ERV1 1 2995 -4718 959 133 7 0 chr6 115825995 115826145 -73453409 + HERVH LTR ERV1 3140 3290 -4423 * 11045 88 30 42 chr6 115826135 115827812 -73451742 + HERVH LTR ERV1 3492 5149 -2564 1301 142 23 5 chr6 115827809 115828028 -73451526 + HERVH LTR ERV1 5597 5819 -1894 * 2540 74 48 13 chr6 115828026 115828405 -73451149 + HERVH LTR ERV1 7322 7713 0 3255 80 0 11 chr6 115828405 115828858 -73450696 + LTR7 LTR ERV1 1 448 -2 2353 160 48 2 chr6 115829008 115829446 -73450108 + MER34B LTR ERV1 5 462 -103 498 296 89 0 chr6 115829467 115829636 -73449918 + L1M4 LINE L1 4704 4887 -1259 301 328 24 16 chr6 115829637 115829762 -73449792 + L1MEc LINE L1 277 402 -5994 23 33 0 0 chr6 115829819 115829849 -73449705 + AT_rich Low_complexity Low_complexity 1 30 0 424 315 13 0 chr6 115829864 115830013 -73449541 + L1MEc LINE L1 441 591 -5805 255 339 29 23 chr6 115830019 115830193 -73449361 + MER58C DNA MER1_type 7 181 -34 2720 261 99 50 chr6 115830253 115830637 -73448917 + L1MEc LINE L1 587 950 -5265 462 36 0 0 chr6 115830637 115830693 -73448861 + (CA)n Simple_repeat Simple_repeat 1 56 0 2720 261 99 50 chr6 115830693 115832764 -73446790 + L1MEc LINE L1 950 3136 -3079 * 12873 205 22 11 chr6 115832759 115837003 -73442551 - L1PA15-16 LINE L1 -2878 3971 5 270 0 0 0 chr6 115837085 115837115 -73442439 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1608 216 49 14 chr6 115837151 115837596 -73441958 - L1 LINE L1 -1532 4614 4154 225 209 11 143 chr6 115837706 115837797 -73441757 + MER94 DNA DNA 17 95 -39 25 31 0 0 chr6 115838536 115838568 -73440986 + AT_rich Low_complexity Low_complexity 1 32 0 677 207 7 29 chr6 115838743 115839000 -73440554 + GA-rich Low_complexity Low_complexity 1 251 0 255 346 37 22 chr6 115839878 115840014 -73439540 + L2 LINE L2 2493 2630 -684 284 416 64 12 chr6 115840189 115840518 -73439036 + L2 LINE L2 2590 2935 -379 261 265 30 30 chr6 115840815 115840947 -73438607 + L1MDa LINE L1 1325 1456 -5084 634 224 13 0 chr6 115841160 115841316 -73438238 + L1MA10 LINE L1 6175 6332 -2 337 175 42 142 chr6 115841940 115842060 -73437494 + MLT2C2 LTR ERVL 357 464 0 884 322 74 44 chr6 115842103 115842628 -73436926 + L2 LINE L2 704 1244 -2070 330 304 84 69 chr6 115842677 115843082 -73436472 + LTR33 LTR ERVL 84 494 -27 343 321 158 27 chr6 115843092 115843313 -73436241 + L2 LINE L2 1243 1492 -1822 272 278 87 43 chr6 115843324 115843439 -73436115 + MER63A DNA MER1_type 91 210 0 362 295 9 9 chr6 115843439 115843544 -73436010 + L2 LINE L2 3208 3312 -1 286 170 38 28 chr6 115843728 115843834 -73435720 + (TTATA)n Simple_repeat Simple_repeat 2 108 0 21 71 0 0 chr6 115844116 115844158 -73435396 + AT_rich Low_complexity Low_complexity 1 42 0 1884 214 75 25 chr6 115844737 115844929 -73434625 + MLT1D LTR MaLR 1 182 -323 1868 101 24 49 chr6 115844929 115845239 -73434315 + AluSx SINE Alu 4 306 0 1884 214 75 25 chr6 115845239 115845526 -73434028 + MLT1D LTR MaLR 182 505 0 248 224 30 0 chr6 115845619 115845686 -73433868 + (TA)n Simple_repeat Simple_repeat 1 69 0 23 0 0 0 chr6 115845801 115845824 -73433730 + AT_rich Low_complexity Low_complexity 1 23 0 26 82 0 0 chr6 115846086 115846147 -73433407 + AT_rich Low_complexity Low_complexity 1 61 0 28 61 0 0 chr6 115846391 115846440 -73433114 + AT_rich Low_complexity Low_complexity 1 49 0 383 300 56 56 chr6 115846583 115846850 -73432704 + L1ME LINE L1 5319 5585 -536 21 0 0 0 chr6 115846881 115846902 -73432652 + AT_rich Low_complexity Low_complexity 1 21 0 1258 241 189 52 chr6 115847879 115847927 -73431627 - MLT1E1 LTR MaLR -4 650 610 1955 182 67 5 chr6 115847927 115848328 -73431226 - MSTB LTR MaLR 0 426 1 1258 241 189 52 chr6 115848328 115848851 -73430703 - MLT1E1 LTR MaLR -44 610 1 424 40 120 27 chr6 115848910 115848985 -73430569 + L1MA3 LINE L1 6224 6305 0 2659 141 26 0 chr6 115849275 115849695 -73429859 + Tigger2 DNA MER2_type 314 744 -1974 1344 143 67 0 chr6 115849788 115850026 -73429528 + Tigger2 DNA MER2_type 2452 2705 -13 201 121 0 0 chr6 115850028 115850061 -73429493 + (CA)n Simple_repeat Simple_repeat 2 34 0 183 80 0 0 chr6 115850104 115850129 -73429425 + (TG)n Simple_repeat Simple_repeat 2 26 0 305 329 77 0 chr6 115850229 115850384 -73429170 - L3 LINE CR1 -193 1384 1218 446 265 99 68 chr6 115850597 115851084 -73428470 - L1ME LINE L1 -544 5618 5113 1271 260 38 3 chr6 115851395 115851764 -73427790 + L1ME1 LINE L1 500 881 -5515 2624 272 16 22 chr6 115851943 115852774 -73426780 + L1ME1 LINE L1 5405 6230 -5 28 29 0 0 chr6 115852839 115852874 -73426680 + AT_rich Low_complexity Low_complexity 1 35 0 288 352 62 37 chr6 115852996 115853269 -73426285 - L3 LINE CR1 -732 845 566 2056 180 18 52 chr6 115857285 115857724 -73421830 - MSTB LTR MaLR 0 426 3 8356 187 38 6 chr6 115857726 115859297 -73420257 - MSTB-int LTR MaLR 0 1651 31 283 93 0 0 chr6 115859297 115859340 -73420214 + MADE1 DNA Mariner 1 43 -37 2015 174 62 7 chr6 115859384 115859787 -73419767 - MSTA LTR MaLR 0 428 4 359 261 44 89 chr6 115859931 115860111 -73419443 + MLT1J LTR MaLR 287 458 -53 224 267 209 19 chr6 115860488 115860593 -73418961 + MIR3 SINE MIR 83 207 -1 24 0 0 0 chr6 115860746 115860770 -73418784 + AT_rich Low_complexity Low_complexity 1 24 0 204 330 75 11 chr6 115861727 115861821 -73417733 + L2 LINE L2 3209 3308 -5 196 364 66 8 chr6 115861863 115861984 -73417570 + L2 LINE L2 2293 2420 -894 7469 29 25 0 chr6 115862593 115864230 -73415324 - L1PA4 LINE L1 0 6155 4489 1191 124 6 0 chr6 115864779 115864957 -73414597 - AluSq SINE Alu 0 313 135 756 258 88 0 chr6 115864970 115865164 -73414390 - MIR SINE MIR -49 213 3 25 0 0 0 chr6 115866061 115866086 -73413468 + AT_rich Low_complexity Low_complexity 1 25 0 307 299 30 45 chr6 115866307 115866441 -73413113 + L1MC4 LINE L1 6572 6703 -1339 5175 137 8 52 chr6 115866489 115867428 -73412126 - L1PA16 LINE L1 -16 6150 5254 1704 248 21 0 chr6 115867426 115867849 -73411705 + L1P LINE L1 4789 5220 -926 * 244 383 55 0 chr6 115868856 115868984 -73410570 + MIR SINE MIR 32 166 -96 218 315 62 31 chr6 115869302 115869432 -73410122 + L3 LINE CR1 1433 1566 -11 241 286 32 0 chr6 115869713 115869776 -73409778 + MIR SINE MIR 76 140 -68 189 0 0 0 chr6 115871976 115871997 -73407557 + (A)n Simple_repeat Simple_repeat 1 21 0 219 308 22 33 chr6 115872035 115872126 -73407428 - MER5B DNA MER1_type 0 178 89 * 260 191 0 0 chr6 115872109 115872151 -73407403 + MER5A DNA MER1_type 148 189 0 431 286 0 20 chr6 115872152 115872250 -73407304 - MER5B DNA MER1_type -79 99 4 498 277 14 27 chr6 115872602 115872750 -73406804 - MIR SINE MIR -70 192 47 1339 221 19 23 chr6 115873023 115873331 -73406223 + AluJb SINE Alu 2 308 -4 19354 171 24 20 chr6 115873747 115876506 -73403048 + L1MA1 LINE L1 13 2757 -4964 288 0 0 0 chr6 115876506 115876538 -73403016 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 19354 171 24 20 chr6 115876538 115881449 -73398105 + L1MA1 LINE L1 2757 7721 0 1878 185 8 45 chr6 115881991 115882370 -73397184 - MLT1A1 LTR MaLR 0 365 1 188 83 0 28 chr6 115882383 115882419 -73397135 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 444 250 75 0 chr6 115882567 115882727 -73396827 + MER113 DNA MER1_type? 6 177 -344 290 80 20 0 chr6 115883191 115883241 -73396313 + (GA)n Simple_repeat Simple_repeat 2 52 0 227 398 82 4 chr6 115885012 115885243 -73394311 + L2 LINE L2 2607 2855 -459 1552 90 0 18 chr6 115885407 115885630 -73393924 - AluSg/x SINE Alu -10 302 84 21 36 0 0 chr6 115885711 115885739 -73393815 + AT_rich Low_complexity Low_complexity 1 28 0 11223 127 7 33 chr6 115885809 115887772 -73391782 - L1PA8 LINE L1 -2348 3798 1887 10561 105 3 0 chr6 115887772 115890135 -73389419 + L1PA8 LINE L1 3798 6168 -4 429 304 8 0 chr6 115890146 115890271 -73389283 + MIR SINE MIR 137 262 0 23 0 0 0 chr6 115890285 115890308 -73389246 + AT_rich Low_complexity Low_complexity 1 23 0 218 300 0 75 chr6 115890364 115890444 -73389110 + L2 LINE L2 3239 3312 -1 40595 36 21 2 chr6 115890513 115896343 -73383211 + L1PA2 LINE L1 207 6152 -3 231 191 0 0 chr6 115896388 115896456 -73383098 + (TG)n Simple_repeat Simple_repeat 1 68 0 200 270 27 27 chr6 115896624 115896698 -73382856 + MIR3 SINE MIR 132 205 -3 3126 158 12 49 chr6 115897507 115898082 -73381472 - MLT2B3 LTR ERVL 0 554 1 232 339 9 26 chr6 115898209 115898324 -73381230 + L2 LINE L2 3190 3302 -11 1005 184 150 71 chr6 115898697 115898963 -73380591 - AluJo SINE Alu -14 288 2 482 301 28 0 chr6 115899164 115899377 -73380177 - LTR37B LTR ERV1 -13 455 237 23 0 0 0 chr6 115899552 115899575 -73379979 + AT_rich Low_complexity Low_complexity 1 23 0 651 207 0 0 chr6 115899724 115899845 -73379709 - FLAM_C SINE Alu -10 123 3 211 287 46 0 chr6 115899855 115899942 -73379612 + MIR SINE MIR 172 262 0 252 273 0 0 chr6 115901135 115901201 -73378353 + T-rich Low_complexity Low_complexity 1 66 0 26 30 0 0 chr6 115901444 115901477 -73378077 + AT_rich Low_complexity Low_complexity 1 33 0 200 288 0 0 chr6 115902138 115902204 -73377350 + A-rich Low_complexity Low_complexity 1 66 0 480 307 39 71 chr6 115902317 115902739 -73376815 + L1MEd LINE L1 980 1420 -4865 196 348 11 22 chr6 115902772 115902861 -73376693 + MIR SINE MIR 47 134 -128 * 227 215 0 46 chr6 115902840 115902905 -73376649 - MIR SINE MIR -32 230 169 25 0 0 0 chr6 115902947 115902972 -73376582 + AT_rich Low_complexity Low_complexity 1 25 0 275 309 12 0 chr6 115904072 115904153 -73375401 + CT-rich Low_complexity Low_complexity 3 84 0 682 278 38 101 chr6 115904439 115904914 -73374640 + L2 LINE L2 2858 3302 -11 1007 248 61 21 chr6 115905200 115905527 -73374027 + MER58B DNA MER1_type 2 341 0 1768 266 63 56 chr6 115906209 115907839 -73371715 + L1MD3 LINE L1 6267 7986 -9 395 266 82 34 chr6 115908710 115908917 -73370637 - MER102a DNA MER1_type -10 320 104 244 333 72 45 chr6 115909847 115909958 -73369596 + MIR SINE MIR 33 146 -116 415 252 168 13 chr6 115909998 115910153 -73369401 - MER5A DNA MER1_type 0 189 11 183 339 17 17 chr6 115910300 115910359 -73369195 + MIR SINE MIR 8 66 -196 718 182 7 7 chr6 115910568 115910711 -73368843 + MER95 LTR ERV 1 143 -288 1914 113 0 15 chr6 115910717 115910982 -73368572 - AluSg SINE Alu -49 261 1 301 242 0 0 chr6 115911206 115911268 -73368286 + Tigger5 DNA MER2_type 2262 2323 0 278 256 103 13 chr6 115911347 115911425 -73368129 - MLT1G1 LTR MaLR -279 316 232 2743 179 56 53 chr6 115911425 115912090 -73367464 - L1M4c LINE L1 -4658 1726 1060 230 259 86 0 chr6 115912304 115912362 -73367192 - L1M4c LINE L1 -6078 235 173 225 0 0 0 chr6 115912448 115912473 -73367081 + (TGG)n Simple_repeat Simple_repeat 3 27 0 2068 117 0 0 chr6 115912934 115913217 -73366337 + AluSx SINE Alu 24 306 -6 2219 66 42 0 chr6 115913217 115913503 -73366051 + AluY SINE Alu 1 299 -12 2041 142 0 3 chr6 115913534 115913845 -73365709 - AluSx SINE Alu -2 310 1 888 300 94 48 chr6 115914290 115914865 -73364689 - L2 LINE L2 0 3313 2709 261 98 0 0 chr6 115915450 115915491 -73364063 + (CA)n Simple_repeat Simple_repeat 2 42 0 833 218 0 48 chr6 115915573 115915779 -73363775 + L1MA6 LINE L1 5894 6089 -211 1339 167 85 14 chr6 115915784 115916066 -73363488 + MSTA LTR MaLR 1 302 -126 962 259 22 33 chr6 115916068 115916591 -73362963 - L1M3f LINE L1 -4095 2113 1555 1494 239 70 46 chr6 115916697 115917215 -73362339 - L1M3f LINE L1 -6493 537 8 5343 151 24 41 chr6 115917551 115918636 -73360918 - MER11C LTR ERVK -4 1067 1 461 272 64 17 chr6 115918738 115918973 -73360581 - L1ME LINE L1 -333 5788 5543 27 29 0 0 chr6 115919062 115919096 -73360458 + AT_rich Low_complexity Low_complexity 1 34 0 273 322 30 15 chr6 115919765 115919964 -73359590 - L1ME LINE L1 -1548 4598 4397 1125 193 0 14 chr6 115920846 115921059 -73358495 - MER6B DNA MER2_type 0 210 1 25 0 0 0 chr6 115921226 115921251 -73358303 + AT_rich Low_complexity Low_complexity 1 25 0 1122 161 17 0 chr6 115922099 115922279 -73357275 + THE1B LTR MaLR 1 183 -181 1840 154 0 0 chr6 115922286 115922571 -73356983 + THE1B-int LTR MaLR 1224 1508 -72 4571 47 0 7 chr6 115922579 115923171 -73356383 - L1P LINE L1 -743 5403 4816 5664 43 16 0 chr6 115923171 115923862 -73355692 + L1PA4 LINE L1 5449 6153 -2 565 62 0 0 chr6 115923863 115923944 -73355610 + THE1B-int LTR MaLR 1500 1580 0 1797 168 48 31 chr6 115923944 115924302 -73355252 + THE1B LTR MaLR 1 364 0 26 30 0 0 chr6 115925714 115925747 -73353807 + AT_rich Low_complexity Low_complexity 1 33 0 537 125 0 0 chr6 115925852 115925932 -73353622 - MADE1 DNA Mariner 0 80 1 1055 279 50 17 chr6 115926468 115926859 -73352695 + L2 LINE L2 2633 3039 -274 21 0 0 0 chr6 115926992 115927013 -73352541 + AT_rich Low_complexity Low_complexity 1 21 0 1923 160 28 22 chr6 115929051 115929413 -73350141 + THE1B LTR MaLR 1 364 0 11417 100 6 1 chr6 115929413 115930986 -73348568 + THE1B-int LTR MaLR 1 1580 0 2098 150 28 19 chr6 115930986 115931347 -73348207 + THE1B LTR MaLR 1 364 0 23 54 0 0 chr6 115932396 115932433 -73347121 + AT_rich Low_complexity Low_complexity 1 37 0 1643 238 82 21 chr6 115932447 115932875 -73346679 + MLT2B1 LTR ERVL 1 454 -66 1788 175 7 0 chr6 115932932 115933252 -73346302 + AluSx SINE Alu 1 322 0 234 128 0 154 chr6 115933261 115933294 -73346260 + MLT2B1 LTR ERVL 455 471 -49 264 30 0 0 chr6 115933294 115933327 -73346227 + (TG)n Simple_repeat Simple_repeat 2 34 0 234 128 0 154 chr6 115933327 115933371 -73346183 + MLT2B1 LTR ERVL 471 520 0 1846 185 5 44 chr6 115933451 115933861 -73345693 - L1MC1 LINE L1 -11 6322 5929 1765 180 58 0 chr6 115934279 115934606 -73344948 + MER7A DNA MER2_type 3 346 0 963 201 165 16 chr6 115934617 115934871 -73344683 - AluJb SINE Alu -9 293 2 257 394 98 8 chr6 115937992 115938124 -73341430 - L2 LINE L2 -13 3259 3116 207 170 0 0 chr6 115941547 115941594 -73337960 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 261 358 47 36 chr6 115941600 115941832 -73337722 + L2 LINE L2 1711 1950 -1364 2227 103 0 0 chr6 115941832 115942124 -73337430 - AluSx SINE Alu -20 292 1 261 358 47 36 chr6 115942124 115942251 -73337303 + L2 LINE L2 1950 2074 -1240 663 243 130 0 chr6 115942363 115942548 -73337006 + MER3 DNA MER1_type 1 209 0 229 204 61 0 chr6 115942506 115942555 -73336999 - MER3 DNA MER1_type -117 92 41 * 225 292 180 78 chr6 115942559 115943086 -73336468 + L2 LINE L2 2287 2867 -447 210 158 0 0 chr6 115943227 115943265 -73336289 + T-rich Low_complexity Low_complexity 1 38 0 514 207 138 0 chr6 115943393 115943509 -73336045 + MER69A DNA AcHobo 20 151 -26 4475 143 21 4 chr6 115944200 115944926 -73334628 + Tigger2 DNA MER2_type 9 746 -1972 1127 126 31 129 chr6 115944990 115945276 -73334278 + Tigger2 DNA MER2_type 2451 2708 -10 1985 280 71 56 chr6 115945696 115946461 -73333093 - MER21B LTR ERV1 -69 794 19 272 281 0 0 chr6 115946482 115946537 -73333017 - MER21B LTR ERV1 -773 90 33 1606 141 67 4 chr6 115946537 115946807 -73332747 + AluSx SINE Alu 5 291 -21 543 165 0 10 chr6 115946867 115946970 -73332584 - Ricksha DNA DNA -651 2600 2499 * 813 199 70 2 chr6 115946967 115947278 -73332276 - Ricksha DNA DNA -2835 411 1 27 62 0 0 chr6 115947278 115947326 -73332228 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr6 115948803 115948824 -73330730 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr6 115948868 115948911 -73330643 + AT_rich Low_complexity Low_complexity 1 43 0 456 252 63 13 chr6 115950185 115950344 -73329210 - LTR43 LTR ERV1 -281 321 155 512 235 61 9 chr6 115950652 115950767 -73328787 - FLAM_C SINE Alu -22 121 1 22 35 0 0 chr6 115950803 115950832 -73328722 + AT_rich Low_complexity Low_complexity 1 29 0 625 274 57 6 chr6 115951232 115951407 -73328147 + MIR SINE MIR 52 235 -27 359 252 37 19 chr6 115951972 115952079 -73327475 - Zaphod DNA AcHobo -3754 277 169 22 35 0 0 chr6 115952146 115952175 -73327379 + AT_rich Low_complexity Low_complexity 1 29 0 1882 124 3 31 chr6 115952272 115952612 -73326942 + AluSg SINE Alu 1 332 0 2570 160 77 1 chr6 115952872 115953517 -73326037 - L1PBa LINE L1 -3534 3328 2635 363 285 147 53 chr6 115953825 115954476 -73325078 - L1M4 LINE L1 -1016 5130 4409 570 331 66 15 chr6 115955012 115955284 -73324270 - MLT1J2 LTR MaLR -4 446 161 261 305 21 11 chr6 115955296 115955391 -73324163 - MLT1J1 LTR MaLR -350 96 1 1468 117 156 0 chr6 115955483 115955740 -73323814 + AluSg SINE Alu 1 297 -3 626 313 83 22 chr6 115956005 115956424 -73323130 - MLT2F LTR ERVL -203 460 10 2007 136 7 0 chr6 115956620 115956921 -73322633 + AluSq SINE Alu 3 305 -8 23 0 0 0 chr6 115957007 115957030 -73322524 + AT_rich Low_complexity Low_complexity 1 23 0 405 236 45 0 chr6 115958060 115958217 -73321337 + (TA)n Simple_repeat Simple_repeat 1 164 0 21 0 0 0 chr6 115959015 115959036 -73320518 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr6 115959155 115959193 -73320361 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr6 115959225 115959249 -73320305 + AT_rich Low_complexity Low_complexity 1 24 0 2116 108 3 3 chr6 115959279 115959574 -73319980 + AluSc SINE Alu 1 295 -14 31 26 0 0 chr6 115959623 115959661 -73319893 + AT_rich Low_complexity Low_complexity 1 38 0 471 235 69 32 chr6 115960031 115960278 -73319276 + LTR37A LTR ERV1 213 426 0 25 65 0 0 chr6 115960545 115960591 -73318963 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr6 115961738 115961759 -73317795 + AT_rich Low_complexity Low_complexity 1 21 0 537 228 14 41 chr6 115962697 115962893 -73316661 - LTR41 LTR ERVL 0 795 585 1681 174 40 35 chr6 115963582 115963955 -73315599 + THE1C LTR MaLR 1 375 0 305 250 0 0 chr6 115964311 115964379 -73315175 + L1MC4 LINE L1 6634 6701 -1341 252 130 0 0 chr6 115964379 115964425 -73315129 - LTR66 LTR ERVL -171 439 394 211 259 103 0 chr6 115964508 115964566 -73314988 + L2 LINE L2 3172 3235 -37 1997 136 0 10 chr6 115964592 115964893 -73314661 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr6 115965727 115965750 -73313804 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 285 280 112 79 chr6 115966636 115966679 -73312875 + L1M4 LINE L1 3784 3824 -2322 8564 105 7 2 chr6 115966679 115968745 -73310809 + L1PA7 LINE L1 4077 6154 0 285 280 112 79 chr6 115968745 115969450 -73310104 + L1M4 LINE L1 3824 4557 -1589 316 303 18 24 chr6 115970564 115970582 -73308972 - L1MA10 LINE L1 -1 6333 6316 2499 265 59 15 chr6 115970582 115971136 -73308418 - L1ME2 LINE L1 -10 6154 5547 2604 154 17 0 chr6 115971136 115971557 -73307997 + MSTA LTR MaLR 1 428 0 2499 265 59 15 chr6 115971557 115971865 -73307689 - L1ME2 LINE L1 -617 5547 5254 1976 112 6 32 chr6 115972518 115972832 -73306722 + AluSg SINE Alu 1 306 -4 1664 229 140 9 chr6 115973067 115973525 -73306029 - MLT2B1 LTR ERVL 0 520 3 395 243 32 122 chr6 115976155 115976344 -73303210 + MER69 DNA AcHobo 35 206 -2320 4866 79 11 0 chr6 115976354 115977011 -73302543 - L1PA8 LINE L1 -10 6162 5499 3786 97 7 0 chr6 115977011 115977661 -73301893 + L1PA8 LINE L1 4826 5481 -691 1001 319 91 31 chr6 115977661 115978210 -73301344 + MER69 DNA AcHobo 195 776 -1750 234 221 29 0 chr6 115978235 115978303 -73301251 + MER69 DNA AcHobo 2017 2086 -440 747 321 10 5 chr6 115978309 115978518 -73301036 - LTR16B LTR ERVL -254 210 1 305 290 58 45 chr6 115978749 115978904 -73300650 - HERV16 LTR ERVL -436 5218 5062 316 409 20 23 chr6 115978941 115979337 -73300217 - HERV16 LTR ERVL -765 4999 4605 181 256 81 35 chr6 115979361 115979447 -73300107 + MIR3 SINE MIR 115 204 -4 624 364 57 14 chr6 115979464 115979744 -73299810 - HERV16 LTR ERVL -1257 4397 4106 676 360 74 26 chr6 115979759 115980179 -73299375 - HERV16 LTR ERVL -2034 2962 2523 911 300 57 18 chr6 115980242 115980903 -73298651 - HERV16 LTR ERVL -2766 2230 1688 903 318 20 0 chr6 115981044 115981346 -73298208 - HERV16 LTR ERVL -3530 1466 1159 327 200 0 0 chr6 115981665 115981720 -73297834 - LTR16B LTR ERVL -407 57 3 208 0 62 0 chr6 115981984 115982016 -73297538 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 238 282 14 0 chr6 115982668 115982739 -73296815 + MER63 DNA MER1_type 990 1061 0 207 0 0 0 chr6 115983381 115983404 -73296150 + (TG)n Simple_repeat Simple_repeat 2 24 0 38 0 0 0 chr6 115983533 115983571 -73295983 + AT_rich Low_complexity Low_complexity 1 38 0 203 171 0 0 chr6 115984111 115984146 -73295408 + T-rich Low_complexity Low_complexity 3 37 0 24 67 0 0 chr6 115984901 115984946 -73294608 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr6 115985357 115985383 -73294171 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr6 115986034 115986059 -73293495 + AT_rich Low_complexity Low_complexity 1 25 0 33 43 0 0 chr6 115986273 115986320 -73293234 + AT_rich Low_complexity Low_complexity 1 47 0 14997 95 7 0 chr6 115986386 115989392 -73290162 + L1PA7 LINE L1 3140 6154 0 207 200 0 71 chr6 115989416 115989486 -73290068 + T-rich Low_complexity Low_complexity 2 66 0 324 0 0 0 chr6 115989603 115989639 -73289915 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr6 115990056 115990080 -73289474 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr6 115990762 115990790 -73288764 + AT_rich Low_complexity Low_complexity 1 28 0 2120 130 37 34 chr6 115990858 115991213 -73288341 - THE1B LTR MaLR 0 364 9 230 313 0 0 chr6 115991370 115991450 -73288104 + (TA)n Simple_repeat Simple_repeat 1 80 0 731 161 21 81 chr6 115992947 115992994 -73286560 - L1MD1 LINE L1 -1 6241 6193 2349 59 0 10 chr6 115992994 115993298 -73286256 - AluY SINE Alu -10 301 1 731 161 21 81 chr6 115993298 115993436 -73286118 - L1MD1 LINE L1 -49 6193 6067 276 374 34 14 chr6 115993847 115993994 -73285560 - L2 LINE L2 0 3272 3123 2157 107 0 0 chr6 115994091 115994389 -73285165 + AluY SINE Alu 1 298 -13 550 311 94 9 chr6 115994400 115994612 -73284942 + L3 LINE CR1 1341 1570 -7 27 81 0 0 chr6 115994860 115994922 -73284632 + AT_rich Low_complexity Low_complexity 1 62 0 6739 50 0 0 chr6 115995199 115995211 -73284343 + L1P LINE L1 3302 3313 -2833 10025 48 3 1 chr6 115995211 115997238 -73282316 - L1PA5 LINE L1 -3 6151 4122 6739 50 0 0 chr6 115997238 115998073 -73281481 + L1PA5 LINE L1 3312 4149 -1997 30 69 0 0 chr6 115998167 115998225 -73281329 + AT_rich Low_complexity Low_complexity 1 58 0 4543 183 40 8 chr6 115998232 115999851 -73279703 - L1PA16 LINE L1 -10 6156 4493 266 296 0 0 chr6 116000828 116000909 -73278645 + ERVL LTR ERVL 5363 5443 -321 278 138 17 0 chr6 116000914 116000972 -73278582 + (TG)n Simple_repeat Simple_repeat 2 60 0 2412 245 29 41 chr6 116001007 116001637 -73277917 - L1 LINE L1 -3245 4320 3684 228 27 0 54 chr6 116001637 116001674 -73277880 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2106 93 22 7 chr6 116001674 116001952 -73277602 - AluSg SINE Alu -1 318 1 2412 245 29 41 chr6 116001952 116002599 -73276955 - L1 LINE L1 -3879 3686 3026 200 103 69 0 chr6 116002725 116002783 -73276771 + (TA)n Simple_repeat Simple_repeat 1 62 0 245 157 112 22 chr6 116002783 116002872 -73276682 - L1MCa LINE L1 -4335 2091 1995 240 111 0 0 chr6 116002872 116002908 -73276646 + (TA)n Simple_repeat Simple_repeat 2 37 0 232 303 34 11 chr6 116003240 116003329 -73276225 + MIR SINE MIR 53 143 -119 206 214 0 0 chr6 116003814 116003856 -73275698 + (CA)n Simple_repeat Simple_repeat 2 43 0 761 163 0 0 chr6 116004628 116004769 -73274785 - L1MA4A LINE L1 -3 6300 6160 278 200 0 0 chr6 116004770 116004820 -73274734 - L1MA4A LINE L1 -427 5876 5827 * 706 138 46 0 chr6 116004814 116004944 -73274610 + L1MA5 LINE L1 5262 5397 -906 15519 172 17 18 chr6 116004953 116007948 -73271606 + L1PA11 LINE L1 2730 5713 -1136 4443 92 9 0 chr6 116007948 116008514 -73271040 + L1PA11 LINE L1 6294 6875 -2 2435 166 18 0 chr6 116008528 116008962 -73270592 + L1MA5 LINE L1 5386 5827 -473 234 78 0 98 chr6 116009166 116009217 -73270337 + LTR66 LTR ERVL 392 437 -173 215 158 50 20 chr6 116009237 116009338 -73270216 + (TA)n Simple_repeat Simple_repeat 2 105 0 1064 180 93 57 chr6 116010521 116010661 -73268893 - L1MA6 LINE L1 0 6300 6167 1378 201 92 28 chr6 116010661 116010944 -73268610 + AluJb SINE Alu 1 301 -1 1064 180 93 57 chr6 116010944 116011103 -73268451 - L1MA6 LINE L1 -133 6167 5990 4996 191 40 13 chr6 116012278 116014318 -73265236 + L1PBa LINE L1 696 3062 -3800 2278 59 0 0 chr6 116014318 116014588 -73264966 - L1PA7 LINE L1 -4 6150 5881 4996 191 40 13 chr6 116014588 116014626 -73264928 + L1PBa LINE L1 3062 3098 -3764 303 297 66 0 chr6 116014748 116014839 -73264715 + MIR SINE MIR 55 151 -111 430 267 37 37 chr6 116014853 116015014 -73264540 + MER69A DNA AcHobo 2 162 -15 238 230 27 68 chr6 116015022 116015096 -73264458 + MIR SINE MIR 158 228 -34 8095 148 23 4 chr6 116015630 116016905 -73262649 - HSMAR2 DNA Mariner -1 1301 3 1268 37 6 0 chr6 116017162 116017326 -73262228 - L1P LINE L1 -3038 3108 2944 10687 26 2 0 chr6 116017328 116019286 -73260268 + L1PA2 LINE L1 4196 6155 0 4849 230 125 29 chr6 116019296 116019808 -73259746 - L1MDa LINE L1 -4923 1617 1155 180 0 0 0 chr6 116019808 116019828 -73259726 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2146 94 3 24 chr6 116019830 116020128 -73259426 - AluSq SINE Alu -20 293 2 4849 230 125 29 chr6 116020128 116021074 -73258480 - L1MDa LINE L1 -5385 1155 16 2299 237 49 46 chr6 116021444 116021817 -73257737 + L1ME3 LINE L1 5466 5836 -326 2396 154 26 8 chr6 116021817 116022200 -73257354 + MLT1B LTR MaLR 1 390 0 2299 237 49 46 chr6 116022200 116022249 -73257305 + L1ME3 LINE L1 5836 5883 -279 1950 119 0 0 chr6 116022249 116022509 -73257045 + AluSx SINE Alu 27 286 -26 192 40 0 0 chr6 116022512 116022537 -73257017 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2299 237 49 46 chr6 116022537 116022801 -73256753 + L1ME3 LINE L1 5884 6159 -3 351 294 27 55 chr6 116023664 116023810 -73255744 - MIR SINE MIR -64 144 3 649 149 67 8 chr6 116023860 116023994 -73255560 + MER96B DNA MER1_type? 80 221 -196 368 374 138 16 chr6 116024848 116025094 -73254460 - L2 LINE L2 -2 3270 2995 372 88 0 0 chr6 116025116 116025173 -73254381 + (ATG)n Simple_repeat Simple_repeat 3 59 0 227 136 182 30 chr6 116027044 116027110 -73252444 + LTR33A LTR ERVL 7 82 -441 440 303 161 8 chr6 116027149 116027403 -73252151 + LTR16C LTR ERVL 169 461 -30 379 245 19 19 chr6 116027593 116027699 -73251855 - MIR3 SINE MIR -6 202 97 195 348 22 0 chr6 116028058 116028150 -73251404 - L2 LINE L2 -214 3058 2965 410 282 90 0 chr6 116028223 116028379 -73251175 + MIR SINE MIR 2 171 -91 1302 268 107 16 chr6 116028659 116029107 -73250447 - LTR16C LTR ERVL -2 489 1 837 256 86 6 chr6 116029687 116030011 -73249543 - LTR16C LTR ERVL -52 439 90 200 204 0 0 chr6 116030137 116030181 -73249373 + L2 LINE L2 2716 2759 -555 302 291 107 15 chr6 116030800 116030996 -73248558 + LTR16C LTR ERVL 1 214 -277 552 228 28 61 chr6 116031040 116031220 -73248334 + LTR16C LTR ERVL 306 479 -12 194 222 19 0 chr6 116032604 116032658 -73246896 + GA-rich Low_complexity Low_complexity 6 60 0 449 333 145 0 chr6 116032756 116032984 -73246570 + LTR16C LTR ERVL 3 263 -228 608 205 8 0 chr6 116033037 116033154 -73246400 + LTR16C LTR ERVL 370 487 -4 2306 145 19 128 chr6 116033344 116033821 -73245733 - MSTA LTR MaLR -1 425 1 1419 281 101 32 chr6 116034323 116034738 -73244816 + L2 LINE L2 2449 2834 -479 1917 166 0 7 chr6 116034738 116035040 -73244514 - AluSx SINE Alu -12 300 1 1419 281 101 32 chr6 116035040 116035258 -73244296 + L2 LINE L2 2834 3035 -278 333 118 0 0 chr6 116035258 116035309 -73244245 + (CA)n Simple_repeat Simple_repeat 1 51 0 1419 281 101 32 chr6 116035309 116035462 -73244092 + L2 LINE L2 3035 3313 0 21 0 0 0 chr6 116035528 116035549 -73244005 + AT_rich Low_complexity Low_complexity 1 21 0 4314 108 0 0 chr6 116035853 116036407 -73243147 - MER41A LTR ERV1 0 554 1 330 253 20 20 chr6 116036967 116037066 -73242488 - MIR SINE MIR -8 254 156 5550 151 46 20 chr6 116037100 116037403 -73242151 - L1MDb LINE L1 -3890 2516 2223 4367 98 32 0 chr6 116037403 116037965 -73241589 + LTR19B LTR ERV1 1 580 0 5550 151 46 20 chr6 116037965 116038828 -73240726 - L1MDb LINE L1 -4183 2223 1318 230 258 90 22 chr6 116038831 116038920 -73240634 + MIR SINE MIR 97 191 -71 2046 104 24 7 chr6 116039491 116039779 -73239775 - AluSc SINE Alu -16 293 1 601 174 174 19 chr6 116040548 116040709 -73238845 - MER5A DNA MER1_type 0 189 4 2482 76 0 0 chr6 116040905 116041206 -73238348 + AluY SINE Alu 3 303 -8 228 284 0 0 chr6 116041400 116041467 -73238087 + L1P LINE L1 4880 4946 -1200 290 259 82 13 chr6 116041680 116041838 -73237716 - L1M4 LINE L1 -3126 3020 2852 4647 138 72 35 chr6 116042473 116042923 -73236631 - L1MA7 LINE L1 -6 6285 5853 2442 76 0 3 chr6 116042923 116043226 -73236328 - AluY SINE Alu -9 302 1 4647 138 72 35 chr6 116043226 116043667 -73235887 - L1MA7 LINE L1 -438 5853 5361 * 9107 154 43 7 chr6 116043665 116045256 -73234298 + L1 LINE L1 3656 5311 -835 207 0 0 0 chr6 116045256 116045279 -73234275 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9107 154 43 7 chr6 116045279 116045341 -73234213 + L1 LINE L1 5311 5369 -777 342 0 0 0 chr6 116045513 116045551 -73234003 + (TG)n Simple_repeat Simple_repeat 2 39 0 1665 175 51 7 chr6 116046004 116046296 -73233258 - AluJb SINE Alu -7 305 1 317 356 47 13 chr6 116046502 116046651 -73232903 + L1ME LINE L1 4673 4826 -1320 459 237 0 17 chr6 116047127 116047245 -73232309 + L1ME LINE L1 5567 5682 -439 1254 156 0 5 chr6 116047362 116047554 -73232000 + MER20 DNA MER1_type 29 219 0 222 267 0 0 chr6 116047852 116047912 -73231642 - MIR SINE MIR 0 262 203 264 228 176 29 chr6 116048022 116048158 -73231396 - L1ME4a LINE L1 -96 6025 5870 197 183 17 0 chr6 116048267 116048327 -73231227 + GA-rich Low_complexity Low_complexity 2 62 0 350 230 137 36 chr6 116048332 116048471 -73231083 + L1MC5 LINE L1 6957 7109 -852 181 229 0 42 chr6 116048507 116048555 -73230999 + L2 LINE L2 3227 3272 0 351 260 48 10 chr6 116049339 116049443 -73230111 - MIR3 SINE MIR -54 154 47 396 224 70 29 chr6 116050094 116050244 -73229310 + MIR SINE MIR 16 182 -62 26 0 0 0 chr6 116051148 116051174 -73228380 + AT_rich Low_complexity Low_complexity 1 26 0 247 325 103 0 chr6 116051222 116051339 -73228215 + MLT1J2 LTR MaLR 34 162 -288 333 265 12 12 chr6 116051370 116051453 -73228101 + MLT1I LTR MaLR 196 278 -131 241 339 42 0 chr6 116051580 116051698 -73227856 - MIR3 SINE MIR -53 155 33 244 311 56 0 chr6 116052482 116052572 -73226982 - L2 LINE L2 -18 3295 3201 1074 169 56 84 chr6 116052756 116053169 -73226385 - MLT1A1 LTR MaLR 0 396 1 252 361 28 7 chr6 116053285 116053429 -73226125 - L2 LINE L2 -507 2807 2661 412 328 31 0 chr6 116053866 116053994 -73225560 - MER91C DNA MER1_type -8 132 1 236 308 0 0 chr6 116054028 116054080 -73225474 + MER5B DNA MER1_type 59 110 -68 284 179 0 0 chr6 116054138 116054194 -73225360 - MER5B DNA MER1_type -120 58 3 237 367 105 9 chr6 116054207 116054531 -73225023 + L2 LINE L2 1135 1489 -1825 583 235 184 26 chr6 116054676 116054910 -73224644 - MLT1H1 LTR MaLR 0 555 285 532 286 83 18 chr6 116055005 116055222 -73224332 - MLT1H1 LTR MaLR -244 305 75 1612 184 16 12 chr6 116055977 116056297 -73223257 + MER74C LTR ERVL 155 460 0 1017 298 91 17 chr6 116057155 116057574 -73221980 + LTR16C LTR ERVL 27 476 -15 2047 148 0 0 chr6 116057779 116058077 -73221477 - AluSx SINE Alu -14 298 1 249 108 0 0 chr6 116058607 116058644 -73220910 + (TG)n Simple_repeat Simple_repeat 2 38 0 1261 261 93 3 chr6 116058725 116059112 -73220442 - MLT2E LTR ERVL -206 422 1 307 363 109 11 chr6 116060249 116060626 -73218928 + L1ME3A LINE L1 5531 5944 -226 228 304 0 0 chr6 116060966 116061035 -73218519 + L2 LINE L2 1869 1937 -1377 1667 210 163 12 chr6 116061073 116061553 -73218001 - L1ME1 LINE L1 -34 6132 5581 2308 233 13 27 chr6 116061715 116062264 -73217290 + MER87 LTR ERV1 1 541 0 1889 196 34 115 chr6 116062568 116062955 -73216599 - MLT1E2 LTR MaLR 0 626 209 2809 66 84 77 chr6 116062955 116063409 -73216145 + L1PA7 LINE L1 5698 6154 0 1889 196 34 115 chr6 116063409 116063596 -73215958 - MLT1E2 LTR MaLR -417 209 103 1061 231 61 72 chr6 116063596 116063779 -73215775 + MLT1C LTR MaLR 1 184 -283 2171 82 3 18 chr6 116063779 116064061 -73215493 + AluSp SINE Alu 30 307 -6 1061 231 61 72 chr6 116064061 116064349 -73215205 + MLT1C LTR MaLR 184 467 0 1889 196 34 115 chr6 116064349 116064391 -73215163 - MLT1E2 LTR MaLR -523 103 59 236 258 30 0 chr6 116064433 116064499 -73215055 - MLT1E2 LTR MaLR -434 71 4 405 285 98 38 chr6 116064502 116064737 -73214817 + L2 LINE L2 2478 2726 -588 597 300 34 39 chr6 116064737 116065166 -73214388 - MLT1J LTR MaLR 0 511 71 2042 288 32 25 chr6 116065453 116066294 -73213260 - L1M4b LINE L1 -5914 945 29 743 259 82 16 chr6 116066367 116066622 -73212932 + L2 LINE L2 2460 2731 -583 2209 151 100 5 chr6 116066632 116067023 -73212531 + MSTA LTR MaLR 1 428 0 1051 296 65 41 chr6 116067036 116067525 -73212029 + L2 LINE L2 2813 3313 0 458 219 185 14 chr6 116068514 116068660 -73210894 + MER5A DNA MER1_type 18 188 -1 493 221 106 0 chr6 116068668 116068781 -73210773 + MER58A DNA MER1_type 1 125 0 2234 158 49 30 chr6 116068781 116069303 -73210251 + MLT2A2 LTR ERVL 1 554 0 649 158 0 0 chr6 116069303 116069396 -73210158 + MER58A DNA MER1_type 121 213 -11 206 237 34 17 chr6 116069721 116069780 -73209774 + L2 LINE L2 3205 3264 -8 295 248 35 44 chr6 116069895 116070008 -73209546 - MIR SINE MIR -104 158 47 359 332 71 33 chr6 116070643 116070980 -73208574 + LTR16C LTR ERVL 121 470 -21 370 239 50 111 chr6 116070993 116071353 -73208201 - L1M4 LINE L1 -1907 5050 4713 2077 123 123 3 chr6 116071382 116071763 -73207791 - MSTA LTR MaLR 0 428 2 331 319 51 37 chr6 116071917 116072133 -73207421 - MLT1H LTR MaLR -300 249 31 293 226 52 43 chr6 116072163 116072278 -73207276 - L1M4 LINE L1 -2234 4723 4608 1955 179 40 37 chr6 116072623 116073169 -73206385 + MLT2A2 LTR ERVL 3 554 0 2474 161 38 5 chr6 116073175 116073597 -73205957 + MLT1C LTR MaLR 29 464 -3 195 306 14 0 chr6 116074006 116074078 -73205476 - MIR SINE MIR -109 153 81 1897 159 34 41 chr6 116074110 116074431 -73205123 - L1PB4 LINE L1 -7 6149 5830 1712 170 38 14 chr6 116074431 116074720 -73204834 - AluJb SINE Alu -16 296 1 1897 159 34 41 chr6 116074720 116074812 -73204742 - L1PB4 LINE L1 -326 5830 5739 463 272 89 19 chr6 116074850 116075008 -73204546 + MER117 DNA MER1_type 1 169 -28 246 248 188 17 chr6 116075623 116075740 -73203814 - L2 LINE L2 0 3272 3136 2454 67 0 0 chr6 116075757 116076054 -73203500 - AluY SINE Alu -14 297 1 285 260 156 21 chr6 116076819 116076915 -73202639 - L2 LINE L2 -1 3271 3163 1385 238 125 14 chr6 116077372 116077796 -73201758 + MLT1H LTR MaLR 43 513 -36 1925 127 13 22 chr6 116077796 116078111 -73201443 - L1MC1 LINE L1 -1 6332 6021 480 284 71 31 chr6 116079328 116079553 -73200001 + MLT1K LTR MaLR 332 565 -23 1299 221 31 3 chr6 116080556 116080909 -73198645 - L1M4 LINE L1 -3034 3923 3561 2415 77 0 10 chr6 116080916 116081213 -73198341 - AluY SINE Alu -17 294 1 2685 217 26 72 chr6 116081217 116081934 -73197620 - L1M4 LINE L1 -4659 2300 1659 2226 107 7 0 chr6 116081934 116082223 -73197331 + AluSc SINE Alu 1 291 -18 2685 217 26 72 chr6 116082223 116082659 -73196895 - L1M4 LINE L1 -5300 1659 1205 2074 129 10 7 chr6 116083172 116083466 -73196088 - AluSx SINE Alu -17 295 1 1976 108 3 46 chr6 116083577 116083883 -73195671 - AluSc SINE Alu -16 293 1 246 239 70 0 chr6 116084638 116084709 -73194845 + MIR SINE MIR 187 262 0 420 261 49 33 chr6 116084817 116085001 -73194553 + L1ME4a LINE L1 5931 6117 -4 315 71 0 0 chr6 116085041 116085083 -73194471 + (TG)n Simple_repeat Simple_repeat 1 42 0 868 200 65 28 chr6 116085901 116086116 -73193438 - MIR SINE MIR 0 262 40 567 224 133 7 chr6 116086491 116086634 -73192920 - MER5A DNA MER1_type -15 174 14 4754 197 66 51 chr6 116086878 116088005 -73191549 + L1MCa LINE L1 474 1785 -4641 2151 141 0 0 chr6 116088005 116088302 -73191252 + AluSx SINE Alu 1 297 -15 4754 197 66 51 chr6 116088302 116088793 -73190761 + L1MCa LINE L1 1785 2267 -4159 608 167 87 0 chr6 116088792 116088918 -73190636 - L1PB1 LINE L1 -1 6150 6014 * 251 323 16 55 chr6 116089195 116089322 -73190232 + L3 LINE CR1 1397 1518 -59 558 221 116 17 chr6 116090094 116090266 -73189288 + MER5A DNA MER1_type 1 189 0 784 161 23 78 chr6 116090443 116090647 -73188907 + MER39B LTR ERV1 6 246 -461 1802 138 3 52 chr6 116090676 116091003 -73188551 + L1MA7 LINE L1 5398 5708 -583 2876 153 30 26 chr6 116091140 116091707 -73187847 + L1MA7 LINE L1 5718 6286 -5 3085 145 18 16 chr6 116091743 116092240 -73187314 + MER39 LTR ERV1 210 707 0 2225 116 0 3 chr6 116092777 116093079 -73186475 + AluSg SINE Alu 1 301 -9 1431 128 14 28 chr6 116094294 116094512 -73185042 - AluJo SINE Alu -95 217 3 2287 105 0 0 chr6 116094576 116094870 -73184684 - AluSg SINE Alu -14 296 3 1887 98 91 14 chr6 116095283 116095559 -73183995 + AluSx SINE Alu 1 297 -15 767 176 48 53 chr6 116095969 116096157 -73183397 - MER5A DNA MER1_type -2 187 1 791 168 0 142 chr6 116096479 116096610 -73182944 - AluJb SINE Alu -10 302 205 606 60 0 0 chr6 116096610 116096693 -73182861 - L1PB1 LINE L1 0 6151 6069 791 168 0 142 chr6 116096693 116096751 -73182803 - AluJb SINE Alu -107 205 140 1505 246 64 16 chr6 116096770 116097205 -73182349 - MLT1C LTR MaLR -1 466 11 424 227 100 9 chr6 116097361 116097471 -73182083 + MER5A DNA MER1_type 24 143 -46 510 304 101 58 chr6 116097544 116098423 -73181131 - L1M4 LINE L1 -1243 4903 3982 337 256 70 74 chr6 116098448 116098955 -73180599 - L1MDa LINE L1 -961 1940 1296 807 180 17 45 chr6 116099087 116099265 -73180289 - MER5B DNA MER1_type -4 174 2 420 301 18 0 chr6 116099982 116100145 -73179409 + L1M4 LINE L1 4931 5096 -1050 1754 219 39 9 chr6 116100395 116100934 -73178620 + L1MB8 LINE L1 2795 3349 -2797 1093 231 30 36 chr6 116100942 116101279 -73178275 + L1MB8 LINE L1 4850 5184 -962 4460 170 12 35 chr6 116101280 116102158 -73177396 + L1MB8 LINE L1 5310 6167 -11 21 0 0 0 chr6 116102769 116102790 -73176764 + AT_rich Low_complexity Low_complexity 1 21 0 2335 113 0 0 chr6 116102851 116103162 -73176392 + AluSq SINE Alu 1 311 -2 29 60 0 0 chr6 116103417 116103467 -73176087 + AT_rich Low_complexity Low_complexity 1 50 0 463 283 118 48 chr6 116104534 116104849 -73174705 + MLT1I LTR MaLR 73 409 0 * 930 269 143 36 chr6 116104849 116105045 -73174509 + MLT1J LTR MaLR 23 195 -316 1816 155 59 0 chr6 116105045 116105335 -73174219 - AluJb SINE Alu -5 307 1 930 269 143 36 chr6 116105335 116105546 -73174008 + MLT1J LTR MaLR 195 475 -36 288 280 112 9 chr6 116106191 116106298 -73173256 + L2 LINE L2 3188 3305 -8 275 226 10 126 chr6 116106589 116106716 -73172838 - MLT1I LTR MaLR -16 533 290 300 289 87 47 chr6 116106794 116106943 -73172611 - MLT1I LTR MaLR -195 214 60 833 67 67 0 chr6 116107393 116107512 -73172042 - L1PA7 LINE L1 -327 5845 5719 2492 60 16 0 chr6 116107512 116107818 -73171736 + L1PA7 LINE L1 5835 6154 0 1211 217 60 50 chr6 116108079 116108476 -73171078 + Charlie4a DNA MER1_type 23 423 -85 647 218 190 0 chr6 116108525 116108704 -73170850 + LTR16A LTR ERVL 238 450 0 308 267 12 23 chr6 116108764 116108850 -73170704 + L2 LINE L2 3188 3272 0 280 200 15 0 chr6 116109285 116109350 -73170204 - MER116 DNA Mariner -14 66 1 529 227 93 7 chr6 116109804 116109954 -73169600 + MER5B DNA MER1_type 1 163 -15 312 299 189 0 chr6 116110005 116110132 -73169422 + MER5A DNA MER1_type 39 189 0 190 188 0 31 chr6 116110511 116110575 -73168979 + GA-rich Low_complexity Low_complexity 3 64 0 319 113 141 14 chr6 116111749 116111820 -73167734 - L1MB3 LINE L1 -1 6182 6103 2274 93 31 3 chr6 116111937 116112227 -73167327 - AluSx SINE Alu -14 298 1 1359 261 77 3 chr6 116113046 116113422 -73166132 + LTR16C LTR ERVL 85 488 -3 2306 137 97 8 chr6 116115359 116115455 -73164099 + MSTC LTR MaLR 1 87 -341 2591 59 0 3 chr6 116115455 116115761 -73163793 + AluY SINE Alu 1 305 -6 2306 137 97 8 chr6 116115761 116116057 -73163497 + MSTC LTR MaLR 87 428 0 182 242 15 0 chr6 116117140 116117206 -73162348 + (TG)n Simple_repeat Simple_repeat 2 68 0 631 258 138 63 chr6 116118038 116118306 -73161248 - MER115 DNA AcHobo -287 406 119 200 273 18 0 chr6 116118341 116118396 -73161158 + MER5C DNA MER1_type 1 56 -268 1165 255 88 62 chr6 116119245 116119779 -73159775 + MLT1H LTR MaLR 2 549 0 200 191 85 0 chr6 116119880 116119927 -73159627 + MIR SINE MIR 97 147 -61 1576 240 45 39 chr6 116121169 116121652 -73157902 - LTR16C LTR ERVL 0 491 6 688 189 146 39 chr6 116122095 116122328 -73157226 - LOR1a LTR ERV1 0 497 240 240 324 171 9 chr6 116122483 116122594 -73156960 + MIR SINE MIR 16 144 -64 187 231 0 0 chr6 116123199 116123238 -73156316 - L2 LINE L2 -33 3239 3201 1015 245 155 31 chr6 116124399 116124787 -73154767 - LTR16A1 LTR ERVL -16 441 6 502 291 6 28 chr6 116125970 116126152 -73153402 + MLT1I LTR MaLR 1 178 -231 1890 162 14 10 chr6 116126154 116126451 -73153103 + AluJb SINE Alu 6 303 -9 4129 212 32 83 chr6 116126700 116128742 -73150812 + L1MC/D LINE L1 3763 5689 -670 2626 53 0 0 chr6 116128745 116129047 -73150507 + AluY SINE Alu 1 302 -9 335 197 0 33 chr6 116129051 116129112 -73150442 - MER45 DNA AcHobo -119 59 1 790 183 127 35 chr6 116129167 116129364 -73150190 + MLT1I LTR MaLR 195 409 0 302 342 91 17 chr6 116129748 116129979 -73149575 - MLT1K LTR MaLR -171 417 170 592 291 73 36 chr6 116130727 116131140 -73148414 - L1ME4a LINE L1 -181 5940 5513 2231 184 59 36 chr6 116131147 116131577 -73147977 - MLT1D LTR MaLR 0 505 61 1871 160 39 64 chr6 116131577 116131983 -73147571 + MSTD LTR MaLR 1 396 0 2231 184 59 36 chr6 116131983 116132046 -73147508 - MLT1D LTR MaLR -444 61 1 230 139 0 0 chr6 116132407 116132443 -73147111 - L1MC3 LINE L1 -1671 6114 6079 21 36 0 0 chr6 116132538 116132566 -73146988 + AT_rich Low_complexity Low_complexity 1 28 0 471 244 144 11 chr6 116132926 116133106 -73146448 + LTR16A1 LTR ERVL 251 454 -3 268 203 54 14 chr6 116133147 116133221 -73146333 + MER114 LTR ERV 93 169 -479 663 256 103 0 chr6 116133254 116133488 -73146066 + MER114 LTR ERV 222 479 -169 2646 88 58 21 chr6 116133972 116134404 -73145150 + LTR7 LTR ERV1 1 448 -2 19353 92 14 81 chr6 116134406 116137816 -73141738 + HERVH LTR ERV1 1 5819 -1894 2692 63 45 13 chr6 116137814 116138194 -73141360 + HERVH LTR ERV1 7322 7713 0 * 2370 125 63 23 chr6 116138194 116138625 -73140929 + LTR7 LTR ERV1 1 448 -2 182 367 75 0 chr6 116138653 116138800 -73140754 + L2 LINE L2 2629 2786 -528 189 107 0 0 chr6 116139463 116139491 -73140063 + (T)n Simple_repeat Simple_repeat 1 28 0 228 35 0 0 chr6 116140014 116140043 -73139511 + (CA)n Simple_repeat Simple_repeat 1 29 0 1768 229 79 153 chr6 116190157 116190470 -73089084 - L1MD3 LINE L1 -371 7671 7336 256 303 98 0 chr6 116190470 116190592 -73088962 - MLT1F1 LTR MaLR -433 134 1 1768 229 79 153 chr6 116190592 116191313 -73088241 - L1MD3 LINE L1 -706 7336 6586 994 274 59 15 chr6 116191299 116192310 -73087244 - L1M4 LINE L1 -2382 3764 2653 * 903 251 19 8 chr6 116192471 116192730 -73086824 + Charlie4 DNA MER1_type 2 263 -1698 183 390 21 35 chr6 116192780 116192921 -73086633 + L2 LINE L2 2619 2757 -557 587 243 154 81 chr6 116193216 116193611 -73085943 - LTR1B LTR ERV1 0 826 403 5730 14 10 0 chr6 116193611 116194306 -73085248 + L1PA3 LINE L1 5228 5928 -227 422 191 28 51 chr6 116194406 116194584 -73084970 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 464 157 39 56 chr6 116194634 116194812 -73084742 + (TATAG)n Simple_repeat Simple_repeat 2 176 0 249 33 0 0 chr6 116194857 116194887 -73084667 + (GA)n Simple_repeat Simple_repeat 2 31 0 1253 219 22 33 chr6 116194887 116195161 -73084393 - AluJo SINE Alu -39 273 3 567 294 81 15 chr6 116195169 116195650 -73083904 + L1ME3 LINE L1 5090 5606 -558 340 259 29 29 chr6 116195729 116195868 -73083686 + MLT1G3 LTR MaLR 43 181 -349 371 232 195 56 chr6 116196038 116196340 -73083214 + L1ME3 LINE L1 5646 5989 -173 188 258 135 11 chr6 116196359 116196448 -73083106 + MIR SINE MIR 131 230 -32 24 0 0 0 chr6 116197350 116197374 -73082180 + AT_rich Low_complexity Low_complexity 1 24 0 493 286 65 54 chr6 116197557 116197851 -73081703 + HAL1 LINE L1 757 1053 -1454 6012 123 3 0 chr6 116197961 116198859 -73080695 + L1PA12 LINE L1 5255 6155 -13 1667 129 168 60 chr6 116198974 116199360 -73080194 + MSTA LTR MaLR 1 428 0 256 189 14 27 chr6 116199711 116199785 -73079769 + (TA)n Simple_repeat Simple_repeat 1 73 0 26 64 0 0 chr6 116200132 116200179 -73079375 + AT_rich Low_complexity Low_complexity 1 47 0 304 263 72 40 chr6 116200342 116200494 -73079060 + L1ME3 LINE L1 4456 4612 -1534 294 213 0 111 chr6 116200522 116200630 -73078924 - MLT1E2 LTR MaLR -442 184 89 439 243 48 48 chr6 116200630 116200836 -73078718 + L1ME3 LINE L1 5776 5981 -181 27 0 0 0 chr6 116200943 116200970 -73078584 + AT_rich Low_complexity Low_complexity 1 27 0 1000 251 67 92 chr6 116201285 116201795 -73077759 - MLT1D LTR MaLR -8 497 1 263 288 12 0 chr6 116202831 116202911 -73076643 + (TA)n Simple_repeat Simple_repeat 1 81 0 1485 174 79 9 chr6 116203476 116203793 -73075761 - MER61A LTR ERV1 -3 340 2 6979 117 49 4 chr6 116203794 116204857 -73074697 - MER61A-int LTR ERV1 0 5217 4107 11480 82 10 38 chr6 116204957 116206662 -73072892 - MER61A-int LTR ERV1 -1100 4117 2461 971 176 56 25 chr6 116206660 116207092 -73072462 - MER61A-int LTR ERV1 -4731 486 3 * 1734 177 12 17 chr6 116207094 116207439 -73072115 - MER61A LTR ERV1 0 343 1 777 370 86 5 chr6 116208174 116208607 -73070947 - L2 LINE L2 -16 3297 2830 555 251 63 21 chr6 116208835 116209074 -73070480 + L1M4 LINE L1 4119 4367 -1779 487 253 142 40 chr6 116209080 116209333 -73070221 + L1M4 LINE L1 4539 4817 -1329 1279 289 90 16 chr6 116209353 116210000 -73069554 - L1M4 LINE L1 -2064 4082 3388 564 248 83 21 chr6 116210005 116210247 -73069307 - MER58 DNA MER1_type 0 2420 130 * 955 234 151 40 chr6 116210246 116210571 -73068983 - Cheshire DNA MER1_type -2059 361 1 33 80 0 0 chr6 116210732 116210807 -73068747 + AT_rich Low_complexity Low_complexity 1 75 0 28 91 0 0 chr6 116211343 116211420 -73068134 + AT_rich Low_complexity Low_complexity 1 77 0 21 36 0 0 chr6 116211444 116211472 -73068082 + AT_rich Low_complexity Low_complexity 1 28 0 616 301 67 27 chr6 116212075 116212374 -73067180 + MER46C DNA MER2_type 19 329 -9 330 67 0 0 chr6 116212749 116212794 -73066760 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 589 392 32 37 chr6 116212811 116213252 -73066302 - L2 LINE L2 -250 3022 2580 240 200 0 0 chr6 116213278 116213333 -73066221 + (TA)n Simple_repeat Simple_repeat 1 55 0 1702 198 91 50 chr6 116213459 116213943 -73065611 - MER67D LTR ERV1 -4 510 7 223 328 108 32 chr6 116214415 116214665 -73064889 - L2 LINE L2 -2896 418 150 565 343 107 49 chr6 116215275 116216480 -73063074 - L2 LINE L2 -933 2381 1107 290 355 71 0 chr6 116216718 116216859 -73062695 - L2 LINE L2 -3 3310 3160 29 28 0 0 chr6 116217477 116217513 -73062041 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr6 116217648 116217674 -73061880 + AT_rich Low_complexity Low_complexity 1 26 0 856 234 176 85 chr6 116217723 116218268 -73061286 - MLT1G3 LTR MaLR 0 530 5 26 30 0 0 chr6 116219275 116219308 -73060246 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr6 116219598 116219626 -73059928 + AT_rich Low_complexity Low_complexity 1 28 0 22 94 0 0 chr6 116219927 116219991 -73059563 + AT_rich Low_complexity Low_complexity 1 64 0 200 93 0 70 chr6 116221211 116221254 -73058300 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 625 144 29 0 chr6 116224228 116224402 -73055152 + (TA)n Simple_repeat Simple_repeat 2 180 0 840 173 208 22 chr6 116224652 116224878 -73054676 + MSTA LTR MaLR 159 426 -2 2319 225 60 32 chr6 116224880 116225511 -73054043 - L1MC3 LINE L1 -531 7254 6606 12184 157 26 21 chr6 116225511 116227723 -73051831 + Tigger1 DNA MER2_type 1 2223 -195 1336 229 7 23 chr6 116227731 116228037 -73051517 - AluJo SINE Alu -3 309 9 299 181 0 138 chr6 116228039 116228133 -73051421 + Tigger1 DNA MER2_type 2233 2313 -105 2710 111 38 13 chr6 116228143 116228592 -73050962 - L1PA16 LINE L1 0 6166 5707 1141 217 96 24 chr6 116228594 116229131 -73050423 - L1MC3 LINE L1 -743 5403 5028 268 236 16 88 chr6 116229315 116229497 -73050057 - L1MC5 LINE L1 -178 7783 7615 222 37 0 0 chr6 116229606 116229633 -73049921 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 258 233 17 0 chr6 116229643 116229703 -73049851 - L1MC5 LINE L1 -519 7442 7382 1562 192 3 19 chr6 116229719 116230036 -73049518 + AluJo SINE Alu 1 312 0 8876 216 36 30 chr6 116230349 116232101 -73047453 + L1PA15 LINE L1 2672 4413 -1752 216 0 0 0 chr6 116232101 116232125 -73047429 + (CA)n Simple_repeat Simple_repeat 2 25 0 8876 216 36 30 chr6 116232125 116233854 -73045700 + L1PA15 LINE L1 4413 6165 0 2769 158 36 61 chr6 116233857 116234757 -73044797 + L1M1 LINE L1 4623 5492 -743 302 80 0 0 chr6 116234757 116234806 -73044748 + L1MA3 LINE L1 6256 6305 0 265 279 94 44 chr6 116235080 116235631 -73043923 - L1M4 LINE L1 -2451 3695 3117 2213 122 0 0 chr6 116235754 116236058 -73043496 - AluSc SINE Alu -5 304 1 35 0 0 0 chr6 116236067 116236102 -73043452 + AT_rich Low_complexity Low_complexity 1 35 0 2373 73 0 10 chr6 116236650 116236964 -73042590 + AluY SINE Alu 1 311 0 206 243 14 0 chr6 116237262 116237332 -73042222 + (TA)n Simple_repeat Simple_repeat 1 71 0 517 259 43 6 chr6 116238205 116238367 -73041187 + L1M4 LINE L1 4718 4885 -1261 6149 216 40 3 chr6 116238378 116240054 -73039500 + L1P4 LINE L1 3784 5514 -652 21 36 0 0 chr6 116240808 116240836 -73038718 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 116240997 116241019 -73038535 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 116241874 116241904 -73037650 + AT_rich Low_complexity Low_complexity 1 30 0 229 172 35 0 chr6 116242796 116242854 -73036700 + (TA)n Simple_repeat Simple_repeat 1 60 0 2028 138 0 0 chr6 116243186 116243482 -73036072 + AluSx SINE Alu 3 298 -14 239 186 17 0 chr6 116243605 116243664 -73035890 + L1MC4 LINE L1 6648 6707 -1335 551 75 0 0 chr6 116246079 116246159 -73033395 - AluY SINE Alu 0 309 230 1589 67 10 0 chr6 116246159 116246353 -73033201 - AluY SINE Alu -115 196 1 27 49 0 0 chr6 116247112 116247153 -73032401 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr6 116247473 116247494 -73032060 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 116247987 116248009 -73031545 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 116248488 116248511 -73031043 + AT_rich Low_complexity Low_complexity 1 23 0 513 277 11 64 chr6 116250398 116250586 -73028968 - MIR SINE MIR -45 217 40 406 348 87 30 chr6 116251005 116251775 -73027779 + L1MEd LINE L1 442 1255 -4864 1572 190 21 0 chr6 116252194 116252512 -73027042 - AluJb SINE Alu 0 324 1 282 186 46 40 chr6 116252825 116252917 -73026637 + MLT1J LTR MaLR 72 268 -304 24 32 0 0 chr6 116253779 116253810 -73025744 + AT_rich Low_complexity Low_complexity 1 31 0 258 142 60 8 chr6 116253877 116254011 -73025543 + (TA)n Simple_repeat Simple_repeat 1 141 0 5125 168 15 18 chr6 116254546 116256063 -73023491 - L1PB3 LINE L1 -7 6147 4630 399 182 68 0 chr6 116257561 116257649 -73021905 - L1MC4 LINE L1 -1003 7039 6946 408 223 54 0 chr6 116257664 116257776 -73021778 - L1MA8 LINE L1 -1 6290 6173 490 282 125 36 chr6 116257776 116258056 -73021498 - L1MC4a LINE L1 -977 6831 6612 198 192 0 0 chr6 116258062 116258114 -73021440 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 30 59 0 0 chr6 116258128 116258179 -73021375 + AT_rich Low_complexity Low_complexity 1 51 0 493 319 38 22 chr6 116258192 116258449 -73021105 - L1MC4a LINE L1 -1242 6566 6336 1974 178 18 52 chr6 116258493 116258932 -73020622 + Tigger2a DNA MER2_type 10 433 -1 1100 242 44 36 chr6 116260521 116260905 -73018649 + MLT1B LTR MaLR 4 390 0 485 209 7 68 chr6 116261767 116261915 -73017639 - L1MB8 LINE L1 -12 6166 6028 882 280 115 58 chr6 116261939 116261967 -73017587 + L1MCb LINE L1 4 29 -6016 356 0 0 22 chr6 116261967 116262012 -73017542 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1900 148 0 11 chr6 116262014 116262297 -73017257 - AluSx SINE Alu -31 281 2 882 280 115 58 chr6 116262297 116262830 -73016724 + L1MCb LINE L1 29 600 -5445 1423 219 68 51 chr6 116263042 116263513 -73016041 - MLT1D LTR MaLR 0 505 27 361 352 70 16 chr6 116264611 116264867 -73014687 - MLT1I LTR MaLR -50 359 90 213 360 0 0 chr6 116265118 116265207 -73014347 - MIR3 SINE MIR -3 205 117 1821 152 7 7 chr6 116265396 116265692 -73013862 + AluSx SINE Alu 7 302 -10 28 0 0 0 chr6 116266631 116266659 -73012895 + AT_rich Low_complexity Low_complexity 1 28 0 21 89 0 0 chr6 116266915 116266971 -73012583 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr6 116267853 116267883 -73011671 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr6 116268003 116268033 -73011521 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr6 116268268 116268299 -73011255 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 116268429 116268450 -73011104 + AT_rich Low_complexity Low_complexity 1 21 0 888 328 26 38 chr6 116268639 116269060 -73010494 - MLT1J1 LTR MaLR -2 444 29 1949 202 9 5 chr6 116269219 116269645 -73009909 + L1MA4 LINE L1 5865 6292 -8 1738 180 54 17 chr6 116270568 116270918 -73008636 - THE1B LTR MaLR 0 364 2 10856 118 2 4 chr6 116270919 116272501 -73007053 - THE1B-int LTR MaLR 0 1580 1 1984 145 42 25 chr6 116272501 116272850 -73006704 - THE1B LTR MaLR 0 364 20 293 310 29 17 chr6 116274453 116274627 -73004927 - L1ME3 LINE L1 -234 5928 5753 26 30 0 0 chr6 116275123 116275156 -73004398 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr6 116275255 116275290 -73004264 + AT_rich Low_complexity Low_complexity 1 35 0 213 39 0 0 chr6 116276030 116276056 -73003498 + (ATG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr6 116276108 116276136 -73003418 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 116276156 116276184 -73003370 + AT_rich Low_complexity Low_complexity 1 28 0 457 259 97 40 chr6 116277254 116277501 -73002053 + MIR SINE MIR 2 262 0 404 283 67 0 chr6 116277746 116277866 -73001688 - MIR SINE MIR -49 213 86 187 424 0 0 chr6 116277947 116278013 -73001541 - L2 LINE L2 -86 3186 3121 2361 143 27 62 chr6 116278169 116278618 -73000936 - Tigger2a DNA MER2_type 0 434 2 21 36 0 0 chr6 116278665 116278693 -73000861 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr6 116279092 116279126 -73000428 + AT_rich Low_complexity Low_complexity 1 34 0 2688 156 70 28 chr6 116279163 116279695 -72999859 - MER52A LTR ERV1 0 1755 1202 4782 238 14 21 chr6 116279700 116280879 -72998675 + L1PBa LINE L1 474 1644 -5219 * 4986 191 28 15 chr6 116280850 116281795 -72997759 + L1PB2 LINE L1 12 968 -5236 6855 188 16 9 chr6 116281797 116283996 -72995558 + L1PB2 LINE L1 3773 5985 -223 2189 129 17 0 chr6 116283974 116284323 -72995231 - L1M1 LINE L1 -5121 2444 2090 * 191 339 136 30 chr6 116284896 116285132 -72994422 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 116285384 116285405 -72994149 + AT_rich Low_complexity Low_complexity 1 21 0 1789 114 28 3 chr6 116287199 116287489 -72992065 - L1MA2 LINE L1 -1 6303 6007 430 295 86 38 chr6 116288251 116288461 -72991093 - MER106A DNA MER1_type -11 225 6 24 32 0 0 chr6 116288893 116288924 -72990630 + AT_rich Low_complexity Low_complexity 1 31 0 375 269 39 15 chr6 116289284 116289414 -72990140 - MER94 DNA DNA -1 133 1 23 68 0 0 chr6 116291248 116291292 -72988262 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr6 116292244 116292269 -72987285 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr6 116292598 116292633 -72986921 + AT_rich Low_complexity Low_complexity 1 35 0 673 242 62 56 chr6 116293423 116293745 -72985809 + MER33 DNA MER1_type 1 324 0 840 304 49 80 chr6 116293920 116294393 -72985161 + MLT1H LTR MaLR 35 492 -57 23 68 0 0 chr6 116294581 116294625 -72984929 + AT_rich Low_complexity Low_complexity 1 44 0 369 239 108 54 chr6 116294769 116294936 -72984618 - MIR SINE MIR -74 188 13 2199 60 50 0 chr6 116295254 116295411 -72984143 - AluY SINE Alu -15 296 117 207 0 0 0 chr6 116295411 116295434 -72984120 + (TG)n Simple_repeat Simple_repeat 2 24 0 2199 60 50 0 chr6 116295434 116295558 -72983996 - AluY SINE Alu -194 117 1 245 53 0 92 chr6 116296915 116296991 -72982563 + (TA)n Simple_repeat Simple_repeat 1 69 0 758 156 0 29 chr6 116297054 116297227 -72982327 + CT-rich Low_complexity Low_complexity 1 168 0 321 100 0 20 chr6 116297227 116297277 -72982277 + (TTCCC)n Simple_repeat Simple_repeat 4 52 0 750 81 27 27 chr6 116297282 116297430 -72982124 + (TTCC)n Simple_repeat Simple_repeat 1 148 0 473 332 17 34 chr6 116297430 116297728 -72981826 + HAL1b LINE L1 226 518 -830 645 325 157 35 chr6 116298525 116299035 -72980519 + L2 LINE L2 2241 2812 -502 29 47 0 0 chr6 116299319 116299362 -72980192 + AT_rich Low_complexity Low_complexity 1 43 0 33 0 0 0 chr6 116299698 116299731 -72979823 + AT_rich Low_complexity Low_complexity 1 33 0 340 307 82 43 chr6 116299791 116300228 -72979326 - L1ME4a LINE L1 -72 6049 5596 23 78 0 0 chr6 116300236 116300287 -72979267 + AT_rich Low_complexity Low_complexity 1 51 0 2178 114 16 0 chr6 116302116 116302422 -72977132 - AluSp SINE Alu -2 311 1 398 262 64 91 chr6 116302633 116302820 -72976734 + L2 LINE L2 2526 2707 -607 22 56 0 0 chr6 116303061 116303097 -72976457 + AT_rich Low_complexity Low_complexity 1 36 0 265 247 14 0 chr6 116303337 116303410 -72976144 - L1ME2 LINE L1 -179 5985 5912 * 1829 273 52 43 chr6 116303391 116304377 -72975177 - L1ME2 LINE L1 -1203 4943 3949 958 201 0 16 chr6 116304401 116304585 -72974969 - AluJ SINE Alu -7 305 125 252 247 0 0 chr6 116304589 116304674 -72974880 + (TA)n Simple_repeat Simple_repeat 1 85 0 606 213 0 50 chr6 116304674 116304815 -72974739 - AluJ SINE Alu -178 134 1 2525 208 108 117 chr6 116304931 116305510 -72974044 - L1MC3 LINE L1 -2 7783 7131 255 314 35 0 chr6 116305510 116305596 -72973958 - MLT1F1 LTR MaLR -444 123 35 2525 208 108 117 chr6 116305596 116306035 -72973519 - L1MC3 LINE L1 -654 7131 6690 3963 246 23 21 chr6 116306046 116307751 -72971803 + L1PA12 LINE L1 1796 3516 -4068 267 281 0 0 chr6 116307750 116307814 -72971740 + L1PA12 LINE L1 3984 4047 -3537 * 1754 178 0 7 chr6 116307817 116308098 -72971456 + AluSx SINE Alu 1 279 -33 278 211 0 53 chr6 116308100 116308195 -72971359 - L1MC4 LINE L1 -1339 6703 6614 720 174 0 0 chr6 116308205 116308360 -72971194 + (TA)n Simple_repeat Simple_repeat 2 156 0 246 204 0 0 chr6 116308361 116308415 -72971139 - L1MC4 LINE L1 -1340 6702 6649 1407 180 4 8 chr6 116308483 116308750 -72970804 + AluSx SINE Alu 3 268 -44 24 85 0 0 chr6 116309042 116309101 -72970453 + AT_rich Low_complexity Low_complexity 1 59 0 4171 222 52 16 chr6 116309169 116310701 -72968853 - L1MA10 LINE L1 -3 6331 4755 1021 216 97 0 chr6 116310701 116310843 -72968711 + L1 LINE L1 4088 4215 -1931 189 0 0 0 chr6 116310843 116310864 -72968690 + (CA)n Simple_repeat Simple_repeat 2 22 0 1021 216 97 0 chr6 116310864 116310999 -72968555 + L1 LINE L1 4215 4392 -1754 292 280 114 23 chr6 116311391 116311523 -72968031 - MLT1J2 LTR MaLR -204 246 103 6051 162 38 39 chr6 116311958 116313112 -72966442 + L1PA8 LINE L1 8 1160 -5301 8573 118 19 6 chr6 116313112 116315300 -72964254 + L1PA8 LINE L1 4307 6483 -4 2182 104 13 10 chr6 116315300 116315609 -72963945 + AluSp SINE Alu 1 310 -3 23 0 0 0 chr6 116315833 116315856 -72963698 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr6 116315924 116315951 -72963603 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr6 116316410 116316433 -72963121 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 369 322 27 40 chr6 116318215 116318364 -72961190 - MIR SINE MIR -84 178 32 216 185 15 31 chr6 116318897 116318962 -72960592 + (TA)n Simple_repeat Simple_repeat 1 64 0 21 36 0 0 chr6 116319019 116319047 -72960507 + AT_rich Low_complexity Low_complexity 1 28 0 2030 122 0 0 chr6 116320204 116320492 -72959062 - AluSx SINE Alu -19 293 6 263 93 23 0 chr6 116320935 116320978 -72958576 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 22 0 0 0 chr6 116321225 116321247 -72958307 + AT_rich Low_complexity Low_complexity 1 22 0 6645 249 38 17 chr6 116322676 116326208 -72953346 - L1MC1 LINE L1 -6 6261 2650 1301 116 45 0 chr6 116326220 116326418 -72953136 - MLT2A2 LTR ERVL -246 207 1 2016 259 54 20 chr6 116326423 116327106 -72952448 + L1ME1 LINE L1 5457 6162 -4 282 280 65 47 chr6 116327114 116327328 -72952226 + L1ME LINE L1 1628 1845 -4551 284 326 32 0 chr6 116327942 116328037 -72951517 - LTR16A LTR ERVL -15 435 338 300 299 47 0 chr6 116328821 116328948 -72950606 + L1ME LINE L1 5384 5516 -717 277 292 10 10 chr6 116329045 116329141 -72950413 + L1ME LINE L1 5660 5755 -484 588 302 68 74 chr6 116329141 116329585 -72949969 - L1MC1 LINE L1 -5226 844 404 4183 263 39 17 chr6 116329604 116330661 -72948893 + L1MEc LINE L1 2361 3461 -2754 1110 145 145 0 chr6 116330661 116330861 -72948693 - MER30 DNA MER1_type 0 230 2 4183 263 39 17 chr6 116330861 116331298 -72948256 + L1MEc LINE L1 3461 3887 -2328 9723 174 32 12 chr6 116331299 116333141 -72946413 - Tigger1 DNA MER2_type -539 1879 1 293 335 113 34 chr6 116333213 116333452 -72946102 - MIR SINE MIR 0 262 5 2137 109 0 3 chr6 116335150 116335444 -72944110 + AluSx SINE Alu 1 293 -19 787 0 58 0 chr6 116335446 116335549 -72944005 + (TATAA)n Simple_repeat Simple_repeat 1 109 0 1298 123 36 0 chr6 116336038 116336257 -72943297 + L1MA2 LINE L1 6078 6304 0 1156 299 36 19 chr6 116336528 116337006 -72942548 - L1ME1 LINE L1 -5 6161 5676 21 0 0 0 chr6 116337013 116337034 -72942520 + AT_rich Low_complexity Low_complexity 1 21 0 2423 157 12 2 chr6 116337864 116338291 -72941263 - L1MA6 LINE L1 0 6300 5870 28 29 0 0 chr6 116339860 116339895 -72939659 + AT_rich Low_complexity Low_complexity 1 35 0 3074 132 11 29 chr6 116340340 116340900 -72938654 - L1MA2 LINE L1 0 6304 5755 1344 263 14 83 chr6 116340996 116341490 -72938064 + L1MD1 LINE L1 82 541 -5999 308 278 12 52 chr6 116341515 116341688 -72937866 + L1MD1 LINE L1 4981 5146 -1394 334 266 16 71 chr6 116341707 116341891 -72937663 + L1MD1 LINE L1 5146 5319 -1221 567 253 51 46 chr6 116341901 116342273 -72937281 + L1MD1 LINE L1 5378 5751 -789 2283 235 39 6 chr6 116342280 116342791 -72936763 - MER74A LTR ERVL -16 542 15 3594 220 41 7 chr6 116342806 116342918 -72936636 + L1MD1 LINE L1 5753 5860 -776 432 0 0 0 chr6 116342918 116342966 -72936588 + (TA)n Simple_repeat Simple_repeat 2 49 0 3594 220 41 7 chr6 116342966 116343677 -72935877 + L1MD1 LINE L1 5860 6604 -32 22 70 0 0 chr6 116343686 116343729 -72935825 + AT_rich Low_complexity Low_complexity 1 43 0 29 47 0 0 chr6 116343757 116343800 -72935754 + AT_rich Low_complexity Low_complexity 1 43 0 240 86 0 0 chr6 116344030 116344065 -72935489 + (TG)n Simple_repeat Simple_repeat 2 36 0 199 71 48 0 chr6 116344064 116344106 -72935448 + (TA)n Simple_repeat Simple_repeat 1 44 0 * 21 36 0 0 chr6 116344480 116344508 -72935046 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 116344967 116344995 -72934559 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 116346618 116346639 -72932915 + AT_rich Low_complexity Low_complexity 1 21 0 963 248 62 14 chr6 116346947 116347305 -72932249 + LTR43 LTR ERV1 176 459 -53 1481 152 103 33 chr6 116347373 116347675 -72931879 + LTR43-int LTR ERV1 1042 1364 -3434 519 290 31 50 chr6 116348109 116348368 -72931186 + LTR43-int LTR ERV1 1434 1687 -3111 288 341 41 27 chr6 116348813 116349033 -72930521 + LTR43-int LTR ERV1 1395 1617 -6640 959 323 34 38 chr6 116349332 116350346 -72929208 + LTR43-int LTR ERV1 1698 2804 -1994 5868 148 12 15 chr6 116350452 116352015 -72927539 - L1PB2 LINE L1 -7 6144 4591 394 296 40 11 chr6 116352277 116352453 -72927101 + LTR43-int LTR ERV1 5996 6176 -1580 2179 89 0 0 chr6 116352504 116352842 -72926712 + AluY SINE Alu 3 340 0 507 183 11 0 chr6 116353164 116353257 -72926297 + LTR43-int LTR ERV1 6350 6443 -233 236 129 65 0 chr6 116353259 116353333 -72926221 + (TTATA)n Simple_repeat Simple_repeat 1 78 0 477 234 51 32 chr6 116353409 116353567 -72925987 + LTR43-int LTR ERV1 4637 4797 -1 1077 215 58 7 chr6 116353812 116354086 -72925468 + LTR43 LTR ERV1 192 479 -123 236 294 54 43 chr6 116354059 116354151 -72925403 + MER41E LTR ERV1 361 453 -59 * 1914 187 13 3 chr6 116355124 116355514 -72924040 - L1MB3 LINE L1 -3 6416 6023 3129 237 33 30 chr6 116355514 116356544 -72923010 - L1MB3 LINE L1 -1909 4473 3441 3700 119 69 21 chr6 116356548 116357611 -72921943 - MER11A LTR ERVK 0 1236 1 1915 204 42 3 chr6 116357618 116358894 -72920660 - L1MB3 LINE L1 -2946 3436 2065 * 3717 211 12 10 chr6 116358891 116359689 -72919865 + L1M4c LINE L1 280 1079 -5305 1253 207 8 4 chr6 116359689 116359931 -72919623 - L1MB3 LINE L1 -6123 261 19 267 133 0 0 chr6 116360051 116360096 -72919458 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 67 0 0 chr6 116360476 116360521 -72919033 + AT_rich Low_complexity Low_complexity 1 45 0 27 62 0 0 chr6 116361371 116361419 -72918135 + AT_rich Low_complexity Low_complexity 1 48 0 339 258 75 63 chr6 116361702 116361954 -72917600 + L1M4 LINE L1 3806 4060 -2086 2031 170 6 20 chr6 116362196 116362549 -72917005 - MER7A DNA MER2_type 0 346 1 2423 68 13 0 chr6 116363183 116363490 -72916064 + AluSp SINE Alu 1 311 -2 225 243 40 14 chr6 116363749 116363823 -72915731 + MER104 DNA Tc2 29 104 -76 21 71 0 0 chr6 116364322 116364364 -72915190 + AT_rich Low_complexity Low_complexity 1 42 0 4514 226 27 7 chr6 116364756 116366805 -72912749 - L1MC1 LINE L1 -179 6154 4066 21 0 0 0 chr6 116366939 116366960 -72912594 + AT_rich Low_complexity Low_complexity 1 21 0 344 306 69 59 chr6 116367239 116367543 -72912011 - L1MC4a LINE L1 -1957 5851 5545 * 669 230 138 20 chr6 116367538 116367907 -72911647 - L1ME1 LINE L1 -327 5839 5403 1110 243 54 90 chr6 116368018 116368169 -72911385 - MLT1D LTR MaLR 0 505 350 378 0 0 0 chr6 116368169 116368211 -72911343 + (TG)n Simple_repeat Simple_repeat 1 42 0 1110 243 54 90 chr6 116368211 116368581 -72910973 - MLT1D LTR MaLR -155 350 3 23 0 0 0 chr6 116369212 116369235 -72910319 + AT_rich Low_complexity Low_complexity 1 23 0 317 289 30 66 chr6 116369287 116369453 -72910101 - HAL1b LINE L1 -429 919 760 568 307 28 0 chr6 116369531 116369749 -72909805 - HAL1b LINE L1 -806 542 319 24 67 0 0 chr6 116372038 116372083 -72907471 + AT_rich Low_complexity Low_complexity 1 45 0 315 0 0 0 chr6 116373044 116373079 -72906475 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 248 242 77 44 chr6 116373334 116373425 -72906129 + MLT1J2 LTR MaLR 357 450 0 1853 254 67 48 chr6 116373552 116374341 -72905213 - L1ME2 LINE L1 -18 6146 5343 34 0 0 0 chr6 116375016 116375050 -72904504 + AT_rich Low_complexity Low_complexity 1 34 0 396 304 82 57 chr6 116375060 116375498 -72904056 - L1ME4a LINE L1 -2 6119 5671 483 283 35 21 chr6 116375500 116375645 -72903909 - MIR SINE MIR -12 250 104 1965 155 108 5 chr6 116376949 116377337 -72902217 + MSTA LTR MaLR 1 428 0 24 77 0 0 chr6 116380678 116380730 -72898824 + AT_rich Low_complexity Low_complexity 1 52 0 962 174 92 0 chr6 116381090 116381274 -72898280 - Tigger7 DNA MER2_type 0 2487 2287 271 226 382 0 chr6 116381262 116381364 -72898190 - Tigger7 DNA MER2_type -2344 143 3 * 213 39 0 0 chr6 116382682 116382708 -72896846 + (TGG)n Simple_repeat Simple_repeat 3 28 0 630 388 36 33 chr6 116382899 116383505 -72896049 + L2 LINE L2 1898 2505 -809 2461 205 56 27 chr6 116384142 116384780 -72894774 - L1MA9 LINE L1 -1270 4876 4220 * 3485 198 49 39 chr6 116384778 116386103 -72893451 + L1MA9 LINE L1 4882 6332 -2 22 35 0 0 chr6 116386486 116386515 -72893039 + AT_rich Low_complexity Low_complexity 1 29 0 5073 179 39 7 chr6 116386731 116388457 -72891097 + L1MA5 LINE L1 4450 6234 -66 335 121 0 0 chr6 116388480 116388540 -72891014 + L1MA5 LINE L1 6175 6235 -65 38 39 0 0 chr6 116388617 116388669 -72890885 + AT_rich Low_complexity Low_complexity 1 52 0 6031 32 6 0 chr6 116388895 116389624 -72889930 - L1PA3 LINE L1 -1042 5104 4372 7738 18 1 1 chr6 116389624 116390708 -72888846 + L1PA3 LINE L1 5102 6155 0 2295 128 5 45 chr6 116391296 116391672 -72887882 + THE1B LTR MaLR 2 362 -2 9509 126 47 13 chr6 116391674 116393194 -72886360 + THE1B-int LTR MaLR 1 1572 -8 2108 149 5 37 chr6 116393196 116393572 -72885982 + THE1B LTR MaLR 1 364 0 3677 189 38 23 chr6 116393572 116394396 -72885158 - L1MB2 LINE L1 -18 6153 5318 1670 241 60 31 chr6 116394402 116394986 -72884568 - L1MB2 LINE L1 -904 5242 4642 27 49 0 0 chr6 116395037 116395078 -72884476 + AT_rich Low_complexity Low_complexity 1 41 0 6711 198 7 53 chr6 116395093 116396670 -72882884 - L1P LINE L1 -1177 4969 3465 235 111 67 0 chr6 116396705 116396750 -72882804 - L1 LINE L1 -1115 5031 4984 5490 121 10 29 chr6 116396750 116397947 -72881607 + L1PA15 LINE L1 4979 6162 -3 939 198 43 74 chr6 116398534 116398791 -72880763 - MLT1A1 LTR MaLR 0 365 117 606 204 0 0 chr6 116398797 116398910 -72880644 + L1PA15 LINE L1 5919 6031 -134 572 164 0 27 chr6 116398916 116399026 -72880528 - MLT1A1 LTR MaLR -256 109 3 34 90 0 8 chr6 116399052 116399154 -72880400 + AT_rich Low_complexity Low_complexity 1 103 -18 2143 123 0 0 chr6 116399154 116399456 -72880098 - AluSg SINE Alu -8 302 1 34 90 0 8 chr6 116399456 116399475 -72880079 + AT_rich Low_complexity Low_complexity 103 121 0 30 69 0 0 chr6 116399487 116399545 -72880009 + AT_rich Low_complexity Low_complexity 1 58 0 2054 124 0 3 chr6 116400086 116400385 -72879169 + AluSq SINE Alu 1 298 -15 283 363 9 9 chr6 116400890 116401003 -72878551 + MER110-int LTR ERV1 1969 2081 -2566 219 69 0 0 chr6 116401379 116401408 -72878146 + (T)n Simple_repeat Simple_repeat 1 29 0 1937 118 59 45 chr6 116401527 116401884 -72877670 + THE1B LTR MaLR 3 364 0 404 248 41 95 chr6 116401987 116402229 -72877325 + MER110-int LTR ERV1 2718 2946 -1701 2458 74 0 6 chr6 116404173 116404485 -72875069 + AluY SINE Alu 1 310 -1 33 0 0 0 chr6 116404986 116405019 -72874535 + AT_rich Low_complexity Low_complexity 1 33 0 460 222 74 23 chr6 116405139 116405315 -72874239 + L1ME4a LINE L1 5936 6120 -1 6125 27 1 4 chr6 116405319 116406055 -72873499 + L1PA4 LINE L1 5414 6147 -8 267 163 0 0 chr6 116406092 116406135 -72873419 - L1PA16 LINE L1 -10 6156 6114 23 0 0 0 chr6 116407395 116407418 -72872136 + AT_rich Low_complexity Low_complexity 1 23 0 236 291 117 82 chr6 116408298 116408504 -72871050 - L2 LINE L2 0 3313 3101 * 906 299 44 48 chr6 116408496 116408728 -72870826 - L2 LINE L2 -753 2561 2330 332 22 0 22 chr6 116408728 116408774 -72870780 + (CA)n Simple_repeat Simple_repeat 2 46 0 906 299 44 48 chr6 116408774 116408976 -72870578 - L2 LINE L2 -984 2330 2129 195 42 0 0 chr6 116408996 116409020 -72870534 + (TATG)n Simple_repeat Simple_repeat 4 27 0 351 0 0 0 chr6 116409032 116409071 -72870483 + (TG)n Simple_repeat Simple_repeat 2 40 0 29 84 0 0 chr6 116409409 116409480 -72870074 + AT_rich Low_complexity Low_complexity 1 71 0 228 67 0 0 chr6 116410191 116410221 -72869333 + (TA)n Simple_repeat Simple_repeat 2 31 0 1233 216 8 8 chr6 116410223 116410468 -72869086 - AluJo SINE Alu -26 286 42 255 290 14 0 chr6 116410468 116410537 -72869017 - AluJb SINE Alu -113 189 120 498 195 127 17 chr6 116410547 116410701 -72868853 - FLAM_C SINE Alu 0 169 3 224 272 49 12 chr6 116411172 116411253 -72868301 + L2 LINE L2 958 1041 -2273 272 191 43 11 chr6 116411380 116411474 -72868080 + (CATATA)n Simple_repeat Simple_repeat 6 102 0 1972 306 144 70 chr6 116411476 116412479 -72867075 + L2 LINE L2 1055 1982 -1331 1669 138 49 75 chr6 116412479 116412864 -72866690 - THE1C LTR MaLR 0 375 1 1972 306 144 70 chr6 116412864 116413964 -72865590 + L2 LINE L2 1982 3313 0 294 368 15 15 chr6 116413981 116414117 -72865437 - MIR SINE MIR -124 138 3 21 57 0 0 chr6 116414149 116414184 -72865370 + AT_rich Low_complexity Low_complexity 1 35 0 186 320 13 27 chr6 116414707 116414782 -72864772 + L2 LINE L2 3232 3305 -8 36 82 0 0 chr6 116416220 116416305 -72863249 + AT_rich Low_complexity Low_complexity 1 85 0 2595 113 14 0 chr6 116417152 116417522 -72862032 - THE1C LTR MaLR 0 375 1 2537 292 64 40 chr6 116417575 116419147 -72860407 + L1MEc LINE L1 108 1717 -4679 21 0 0 0 chr6 116419965 116419986 -72859568 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 116420349 116420374 -72859180 + AT_rich Low_complexity Low_complexity 1 25 0 1495 87 78 0 chr6 116421606 116421825 -72857729 - L1PA8 LINE L1 -4 6168 5933 188 118 0 39 chr6 116422054 116422105 -72857449 + (TATAA)n Simple_repeat Simple_repeat 5 53 0 28 0 0 0 chr6 116422972 116423000 -72856554 + AT_rich Low_complexity Low_complexity 1 28 0 4637 147 37 2 chr6 116424153 116425012 -72854542 - L1PA11 LINE L1 -740 5428 4538 4325 150 9 7 chr6 116425013 116425747 -72853807 + L1PA11 LINE L1 5439 6174 0 3799 194 3 14 chr6 116426421 116427149 -72852405 + MER72 LTR ERV1 1 720 -2 489 285 106 0 chr6 116427422 116427573 -72851981 - MER5B DNA MER1_type -11 167 1 1028 226 25 4 chr6 116427604 116427847 -72851707 - L1MA7 LINE L1 0 6291 6044 1883 280 138 42 chr6 116428078 116429497 -72850057 + L1M4 LINE L1 3092 4765 -1381 2227 200 44 11 chr6 116429497 116429951 -72849603 + MER70A LTR ERVL 1 469 -3 1883 280 138 42 chr6 116429951 116430550 -72849004 + L1M4 LINE L1 4765 5305 -841 628 203 46 13 chr6 116430567 116430720 -72848834 + L1M4 LINE L1 2 159 -6383 670 115 106 0 chr6 116431014 116431127 -72848427 - L1M1 LINE L1 -518 5782 5658 747 200 30 30 chr6 116431157 116431369 -72848185 - L1PA8A LINE L1 -433 5698 5497 2435 225 31 3 chr6 116431377 116432080 -72847474 + L1PA8A LINE L1 4777 5489 -743 2529 71 0 0 chr6 116432152 116432461 -72847093 + AluY SINE Alu 3 311 0 21 71 0 0 chr6 116432514 116432556 -72846998 + AT_rich Low_complexity Low_complexity 1 42 0 7696 23 0 0 chr6 116432560 116433459 -72846095 - L1PA3 LINE L1 -3 6152 5254 524 289 34 79 chr6 116433781 116434047 -72845507 - MIR SINE MIR 0 262 9 1581 206 37 14 chr6 116434047 116434401 -72845153 + MLT2D LTR ERVL 5 366 -48 22 0 0 0 chr6 116434440 116434462 -72845092 + AT_rich Low_complexity Low_complexity 1 22 0 274 244 52 6 chr6 116434521 116434693 -72844861 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 30 0 0 chr6 116435507 116435540 -72844014 + AT_rich Low_complexity Low_complexity 1 33 0 228 229 33 74 chr6 116435660 116435782 -72843772 - MIR SINE MIR 0 262 146 836 106 0 0 chr6 116436524 116436637 -72842917 + THE1C LTR MaLR 1 113 -262 479 243 20 59 chr6 116436667 116436819 -72842735 + HERV16 LTR ERVL 1711 1856 -3140 1831 176 5 43 chr6 116436820 116437322 -72842232 + MER51A LTR ERV1 1 575 -59 1532 77 9 0 chr6 116437322 116437542 -72842012 + MER51A-int LTR ERV1 910 1131 -6989 * 3310 146 21 16 chr6 116437539 116438205 -72841349 + MER51A-int LTR ERV1 1375 2043 -6077 755 212 15 1 chr6 116438221 116438413 -72841141 + MER51A-int LTR ERV1 2022 4314 -566 802 181 39 19 chr6 116438416 116438621 -72840933 + MER51A-int LTR ERV1 3322 3530 -2416 337 284 0 3 chr6 116438617 116438783 -72840771 + MER51A-int LTR ERV1 5381 5595 -2161 * 292 157 0 0 chr6 116439274 116439325 -72840229 + MER51A-int LTR ERV1 7492 7542 -274 1675 267 47 55 chr6 116439779 116440844 -72838710 + MER51A-int LTR ERV1 6513 7816 0 2919 149 144 27 chr6 116440845 116441409 -72838145 + MER51A LTR ERV1 1 630 -4 263 287 56 46 chr6 116441418 116441526 -72838028 + HERV16 LTR ERVL 1912 2020 -3744 1228 125 0 23 chr6 116441643 116441859 -72837695 - AluY SINE Alu -100 211 1 582 281 101 10 chr6 116441880 116442168 -72837386 + L1MEc LINE L1 1755 2068 -4328 1018 210 33 21 chr6 116442219 116442462 -72837092 + MLT1D LTR MaLR 258 503 -2 599 198 35 20 chr6 116442471 116442668 -72836886 + L1MEc LINE L1 2100 2299 -4097 327 179 0 0 chr6 116442678 116442745 -72836809 + (TA)n Simple_repeat Simple_repeat 1 67 0 200 143 24 0 chr6 116442798 116442840 -72836714 + (TA)n Simple_repeat Simple_repeat 2 44 0 960 262 14 41 chr6 116442890 116443105 -72836449 + L1MEc LINE L1 2465 2667 -3548 2818 187 14 20 chr6 116443105 116443657 -72835897 - MER44D DNA MER2_type 0 605 2 960 262 14 41 chr6 116443657 116443808 -72835746 + L1MEc LINE L1 2667 2821 -3394 356 302 200 10 chr6 116443903 116444108 -72835446 - MLT1F1 LTR MaLR -3 564 321 841 254 48 3 chr6 116444131 116444422 -72835132 + L1M4 LINE L1 4645 4948 -1198 392 362 87 0 chr6 116446664 116446860 -72832694 + LTR16A LTR ERVL 225 437 -13 1349 322 33 0 chr6 116446879 116447394 -72832160 + HERV16 LTR ERVL 8 539 -4457 1908 166 54 117 chr6 116447545 116448170 -72831384 + L1MB8 LINE L1 5573 6158 -20 447 219 164 27 chr6 116448169 116448388 -72831166 - L1MD3 LINE L1 -41 7954 7706 * 257 254 0 16 chr6 116448428 116448491 -72831063 - MLT1F1 LTR MaLR -458 109 48 990 98 0 0 chr6 116448529 116448661 -72830893 + AluSp/q SINE Alu 171 302 -11 239 181 108 24 chr6 116448750 116448833 -72830721 + MER39 LTR ERV1 583 672 -35 431 253 126 47 chr6 116448885 116449386 -72830168 - L1MC4 LINE L1 -1290 6518 5980 2089 209 47 24 chr6 116450052 116450546 -72829008 - MLT1D LTR MaLR 0 505 1 26 30 0 0 chr6 116451353 116451386 -72828168 + AT_rich Low_complexity Low_complexity 1 33 0 25 65 0 0 chr6 116451398 116451444 -72828110 + AT_rich Low_complexity Low_complexity 1 46 0 234 213 16 0 chr6 116451734 116451795 -72827759 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 189 301 133 0 chr6 116453963 116454046 -72825508 - L2 LINE L2 -182 3090 2997 305 24 24 0 chr6 116454348 116454390 -72825164 + (CA)n Simple_repeat Simple_repeat 2 44 0 582 116 0 0 chr6 116455647 116455742 -72823812 - L1PA6 LINE L1 -1 6153 6059 293 333 118 55 chr6 116456366 116456747 -72822807 + L2 LINE L2 959 1363 -1951 528 236 118 38 chr6 116456769 116457071 -72822483 - L1MC4 LINE L1 -425 5759 5418 6616 194 150 28 chr6 116457073 116458637 -72820917 + MER52A LTR ERV1 1 1755 0 29 70 0 0 chr6 116458721 116458778 -72820776 + AT_rich Low_complexity Low_complexity 1 57 0 503 273 149 25 chr6 116458857 116459429 -72820125 - L1MC4 LINE L1 -1217 4929 4287 490 286 147 0 chr6 116459487 116459739 -72819815 - L1MC4 LINE L1 -1950 4196 3908 2396 260 64 21 chr6 116459768 116460529 -72819025 - MER21B LTR ERV1 -51 812 19 413 236 0 22 chr6 116460553 116460642 -72818912 - MER21B LTR ERV1 -776 87 1 1989 149 0 0 chr6 116460707 116461003 -72818551 - AluSx SINE Alu -16 296 1 415 224 71 18 chr6 116461138 116461308 -72818246 - L1MC4 LINE L1 -2429 3717 3539 34 65 0 0 chr6 116461308 116461370 -72818184 + AT_rich Low_complexity Low_complexity 1 62 0 358 266 113 11 chr6 116461404 116461581 -72817973 - L1MC4 LINE L1 -2865 3281 3087 232 121 0 0 chr6 116461815 116461848 -72817706 - Alu SINE Alu -23 279 247 919 124 0 0 chr6 116461848 116461977 -72817577 - AluJb SINE Alu -183 129 1 1391 208 3 45 chr6 116461982 116462290 -72817264 - AluJo SINE Alu -17 295 1 1516 196 0 38 chr6 116462581 116462898 -72816656 - AluJo SINE Alu -7 305 1 248 248 107 44 chr6 116462898 116463168 -72816386 - L1MC4 LINE L1 -3728 2418 2132 346 283 14 7 chr6 116463926 116464071 -72815483 + (TA)n Simple_repeat Simple_repeat 2 147 0 555 183 73 22 chr6 116464158 116464295 -72815259 + LTR50 LTR ERVL 3 146 -649 529 336 94 30 chr6 116464468 116464733 -72814821 + LTR50 LTR ERVL 387 668 -127 21 0 0 0 chr6 116464805 116464826 -72814728 + AT_rich Low_complexity Low_complexity 1 21 0 832 230 0 0 chr6 116464826 116464978 -72814576 - FRAM SINE Alu -23 153 2 3258 211 30 17 chr6 116466186 116467016 -72812538 + L1 LINE L1 4297 5137 -1009 23 0 0 0 chr6 116517047 116517070 -72762484 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr6 116517980 116518009 -72761545 + AT_rich Low_complexity Low_complexity 1 29 0 293 115 0 16 chr6 116518055 116518116 -72761438 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 1688 117 0 0 chr6 116518727 116518957 -72760597 - AluSc SINE Alu 0 309 80 182 264 99 44 chr6 116519109 116519200 -72760354 + L2 LINE L2 1320 1415 -1899 228 342 119 40 chr6 116519604 116519806 -72759748 + L2 LINE L2 1821 2038 -1276 558 304 37 28 chr6 116520576 116520793 -72758761 - MIR SINE MIR -35 227 9 204 125 0 0 chr6 116521516 116521548 -72758006 + (TATG)n Simple_repeat Simple_repeat 3 34 0 477 353 66 0 chr6 116523499 116523743 -72755811 - MIR SINE MIR 0 262 3 30 27 0 0 chr6 116524861 116524898 -72754656 + AT_rich Low_complexity Low_complexity 1 37 0 31 44 0 0 chr6 116526256 116526301 -72753253 + AT_rich Low_complexity Low_complexity 1 45 0 272 136 0 45 chr6 116526325 116526391 -72753163 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 236 262 97 35 chr6 116527114 116527259 -72752295 + L1MC4 LINE L1 6891 7044 -998 1590 180 0 49 chr6 116527928 116528234 -72751320 - AluJo SINE Alu -16 296 6 258 200 0 17 chr6 116528287 116528347 -72751207 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1041 186 120 16 chr6 116528634 116528876 -72750678 - MER52A LTR ERV1 0 1755 1489 1987 228 206 25 chr6 116528901 116529902 -72749652 - MER52A LTR ERV1 -380 1375 1 2391 20 0 0 chr6 116530103 116530426 -72749128 - L1P LINE L1 -731 5424 5102 * 2462 21 0 0 chr6 116530424 116530711 -72748843 + L1P LINE L1 4370 4656 -1490 * 27234 54 36 2 chr6 116530707 116534274 -72745280 - L1P LINE L1 -2354 3792 105 9208 69 13 0 chr6 116534375 116535960 -72743594 - L1P2 LINE L1 -430 5724 4123 307 279 54 31 chr6 116536231 116536360 -72743194 - MLT1K LTR MaLR -267 321 190 21 0 0 0 chr6 116536525 116536546 -72743008 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 116537828 116537850 -72741704 + AT_rich Low_complexity Low_complexity 1 22 0 889 276 160 35 chr6 116539403 116539954 -72739600 - L1MCc LINE L1 -4981 1442 823 23 0 0 0 chr6 116540156 116540179 -72739375 + AT_rich Low_complexity Low_complexity 1 23 0 445 278 47 12 chr6 116541182 116541351 -72738203 + MER104 DNA Tc2 4 178 -2 24 53 0 0 chr6 116541808 116541846 -72737708 + AT_rich Low_complexity Low_complexity 1 38 0 2235 95 0 0 chr6 116541846 116542152 -72737402 + AluSg1 SINE Alu 1 306 0 1235 322 113 30 chr6 116542246 116542615 -72736939 - L2 LINE L2 -185 3128 2791 486 120 0 0 chr6 116542615 116542690 -72736864 + (TA)n Simple_repeat Simple_repeat 2 76 0 1235 322 113 30 chr6 116542690 116543036 -72736518 - L2 LINE L2 -522 2791 2330 2346 190 19 70 chr6 116543036 116543620 -72735934 + MLT2B3 LTR ERVL 1 554 0 1235 322 113 30 chr6 116543620 116543790 -72735764 - L2 LINE L2 -983 2330 2175 1657 136 3 86 chr6 116544255 116544593 -72734961 - AluSx SINE Alu 0 312 3 267 289 19 29 chr6 116545780 116545884 -72733670 + L2 LINE L2 3211 3313 0 39 50 0 0 chr6 116546599 116546659 -72732895 + AT_rich Low_complexity Low_complexity 1 60 0 22 35 0 0 chr6 116546695 116546724 -72732830 + AT_rich Low_complexity Low_complexity 1 29 0 23 56 5 0 chr6 116547127 116547213 -72732341 + AT_rich Low_complexity Low_complexity 1 51 0 26 0 0 0 chr6 116550332 116550358 -72729196 + AT_rich Low_complexity Low_complexity 1 26 0 280 358 83 4 chr6 116550562 116550791 -72728763 + L1MC/D LINE L1 5545 5791 -2017 30 27 0 0 chr6 116550906 116550943 -72728611 + AT_rich Low_complexity Low_complexity 1 37 0 363 299 111 45 chr6 116551165 116551409 -72728145 + HAL1 LINE L1 2248 2507 0 769 201 20 42 chr6 116553059 116553309 -72726245 - L1ME2 LINE L1 -223 5955 5709 273 75 0 0 chr6 116553326 116553366 -72726188 + (TG)n Simple_repeat Simple_repeat 2 41 0 411 320 60 34 chr6 116553583 116553817 -72725737 - L1MEc LINE L1 -6088 308 69 279 320 0 31 chr6 116554089 116554186 -72725368 + L2 LINE L2 2509 2602 -712 29 0 0 0 chr6 116554203 116554232 -72725322 + AT_rich Low_complexity Low_complexity 1 29 0 1876 118 7 28 chr6 116554232 116554547 -72725007 - AluSp SINE Alu 0 309 1 304 333 98 38 chr6 116554734 116555452 -72724102 - L1M4 LINE L1 -1797 4349 3589 710 279 0 0 chr6 116555665 116555826 -72723728 + MER63A DNA MER1_type 44 204 -6 422 245 9 19 chr6 116555826 116555932 -72723622 - LTR40b LTR ERVL -1 461 357 644 226 74 25 chr6 116555958 116556151 -72723403 + MSTC LTR MaLR 1 189 -207 1723 220 33 41 chr6 116556222 116556731 -72722823 - MLT1D LTR MaLR 0 505 1 1649 187 25 88 chr6 116556885 116557365 -72722189 + MER41B LTR ERV1 90 476 -10 33 43 0 0 chr6 116558073 116558120 -72721434 + AT_rich Low_complexity Low_complexity 1 47 0 775 212 0 0 chr6 116558126 116558263 -72721291 + FRAM SINE Alu 1 137 -39 228 67 0 0 chr6 116558274 116558304 -72721250 + (TAA)n Simple_repeat Simple_repeat 2 31 0 2034 107 62 0 chr6 116558496 116558787 -72720767 + AluSx SINE Alu 1 309 -3 180 158 0 0 chr6 116559340 116559378 -72720176 + T-rich Low_complexity Low_complexity 1 38 0 40696 36 19 1 chr6 116559380 116565398 -72714156 - L1PA3 LINE L1 -3 6152 3 1208 124 56 20 chr6 116565398 116565657 -72713897 + MLT2A2 LTR ERVL 285 453 0 1283 145 32 14 chr6 116566003 116566224 -72713330 - AluSq SINE Alu -14 299 75 26 50 0 0 chr6 116566489 116566529 -72713025 + AT_rich Low_complexity Low_complexity 1 40 0 31 44 0 0 chr6 116567511 116567556 -72711998 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr6 116568054 116568076 -72711478 + AT_rich Low_complexity Low_complexity 1 22 0 381 236 99 39 chr6 116568695 116568928 -72710626 - LTR37B LTR ERV1 -10 458 212 207 0 0 0 chr6 116569858 116569881 -72709673 + (T)n Simple_repeat Simple_repeat 1 23 0 331 326 102 70 chr6 116570295 116570736 -72708818 - MLT1H LTR MaLR -12 537 83 957 140 11 62 chr6 116570942 116571120 -72708434 + AluSc SINE Alu 137 305 -4 622 320 133 55 chr6 116571366 116572186 -72707368 + L1MEc LINE L1 791 1747 -4649 191 36 36 0 chr6 116572186 116572214 -72707340 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 622 320 133 55 chr6 116572214 116572676 -72706878 + L1MEc LINE L1 1747 2172 -4224 21 71 0 0 chr6 116572788 116572830 -72706724 + AT_rich Low_complexity Low_complexity 1 42 0 758 279 24 20 chr6 116572834 116573131 -72706423 + L1MD2 LINE L1 5597 5894 -465 4290 175 25 16 chr6 116573146 116573815 -72705739 - L1PA16 LINE L1 -10 6156 5476 285 51 0 0 chr6 116573815 116573854 -72705700 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4290 175 25 16 chr6 116573854 116574018 -72705536 - L1PA16 LINE L1 -690 5476 5315 * 6123 133 21 0 chr6 116574012 116575159 -72704395 - L1PA14 LINE L1 -5 6156 4991 4285 192 18 7 chr6 116575157 116576013 -72703541 + L1PA14 LINE L1 4109 4973 -1173 * 2795 225 74 14 chr6 116576003 116576981 -72702573 - L1PA16 LINE L1 -813 5333 4231 * 5604 165 42 35 chr6 116577506 116579237 -72700317 + L1PA16 LINE L1 4410 6157 -9 1244 202 78 19 chr6 116579266 116579651 -72699903 + MSTC LTR MaLR 1 426 -2 336 24 0 0 chr6 116580699 116580740 -72698814 + (CA)n Simple_repeat Simple_repeat 1 41 0 252 0 0 0 chr6 116581405 116581433 -72698121 + (TG)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr6 116581971 116582000 -72697554 + AT_rich Low_complexity Low_complexity 1 29 0 374 296 117 65 chr6 116582297 116582791 -72696763 + L1M4 LINE L1 2633 3152 -2994 610 277 135 41 chr6 116583196 116583370 -72696184 - Charlie4a DNA MER1_type -1471 490 334 2182 65 45 0 chr6 116583370 116583661 -72695893 + AluY SINE Alu 1 304 -7 610 277 135 41 chr6 116583661 116583901 -72695653 - Charlie4a DNA MER1_type -1627 334 37 398 335 14 19 chr6 116585037 116585252 -72694302 + MIR SINE MIR 37 250 -12 416 277 18 54 chr6 116585287 116585453 -72694101 + MIR SINE MIR 41 200 -62 216 191 0 0 chr6 116585454 116585496 -72694058 + (CA)n Simple_repeat Simple_repeat 2 43 0 23 78 0 0 chr6 116585663 116585714 -72693840 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr6 116586129 116586150 -72693404 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 116586204 116586229 -72693325 + AT_rich Low_complexity Low_complexity 1 25 0 343 330 70 51 chr6 116586288 116586503 -72693051 - LTR16A LTR ERVL -180 270 52 499 15 29 0 chr6 116587248 116587316 -72692238 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 21 36 0 0 chr6 116587443 116587471 -72692083 + AT_rich Low_complexity Low_complexity 1 28 0 289 238 122 55 chr6 116588091 116588255 -72691299 + MLT1J2 LTR MaLR 37 211 -239 2016 163 19 22 chr6 116589058 116589420 -72690134 + THE1B LTR MaLR 1 361 -3 11022 110 2 12 chr6 116589423 116591016 -72688538 + THE1B-int LTR MaLR 1 1578 -2 2067 149 19 32 chr6 116591018 116591387 -72688167 + THE1B LTR MaLR 1 364 0 24 53 0 0 chr6 116592016 116592054 -72687500 + AT_rich Low_complexity Low_complexity 1 38 0 359 197 13 13 chr6 116592140 116592216 -72687338 - MIR SINE MIR -30 232 157 1345 182 81 85 chr6 116592284 116592718 -72686836 + MSTB1 LTR MaLR 1 432 0 645 213 6 27 chr6 116592741 116592924 -72686630 - Charlie1 DNA MER1_type -5 2756 2578 244 242 129 73 chr6 116592931 116593013 -72686541 + L2 LINE L2 3128 3221 -92 1981 138 38 54 chr6 116593013 116593080 -72686474 - THE1B LTR MaLR 0 364 297 2112 142 0 0 chr6 116593080 116593390 -72686164 - AluSx SINE Alu -1 311 2 1981 138 38 54 chr6 116593390 116593692 -72685862 - THE1B LTR MaLR -67 297 1 244 242 129 73 chr6 116593692 116593733 -72685821 + L2 LINE L2 3221 3258 -55 27 62 0 0 chr6 116593738 116593786 -72685768 + AT_rich Low_complexity Low_complexity 1 48 0 24 32 0 0 chr6 116593855 116593886 -72685668 + AT_rich Low_complexity Low_complexity 1 31 0 2866 241 59 7 chr6 116593886 116594475 -72685079 - Charlie1 DNA MER1_type -185 2576 1924 2228 78 10 7 chr6 116594475 116594770 -72684784 - AluY SINE Alu -15 296 1 2866 241 59 7 chr6 116594770 116595066 -72684488 - Charlie1 DNA MER1_type -837 1924 1645 21 0 0 0 chr6 116596075 116596096 -72683458 + AT_rich Low_complexity Low_complexity 1 21 0 310 322 35 79 chr6 116596656 116596764 -72682790 + L1ME LINE L1 4625 4736 -1410 2001 104 4 0 chr6 116596764 116597033 -72682521 + AluSp SINE Alu 14 283 -30 216 97 0 0 chr6 116597033 116597064 -72682490 + (TAGA)n Simple_repeat Simple_repeat 1 31 0 310 322 35 79 chr6 116597064 116597348 -72682206 + L1ME LINE L1 4734 5001 -1145 608 271 52 27 chr6 116597375 116597821 -72681733 + L1ME LINE L1 5060 5518 -646 2208 109 3 3 chr6 116598004 116598317 -72681237 + AluSq SINE Alu 1 313 0 283 258 0 22 chr6 116599651 116599740 -72679814 - L1MC4 LINE L1 -1339 6703 6617 23 0 0 0 chr6 116600047 116600070 -72679484 + AT_rich Low_complexity Low_complexity 1 23 0 416 309 26 7 chr6 116600070 116600222 -72679332 + MER69 DNA AcHobo 17 171 -1055 488 284 86 19 chr6 116600675 116600932 -72678622 - L1MEc LINE L1 -5051 1345 1072 301 338 62 41 chr6 116601144 116601434 -72678120 + L1ME LINE L1 5378 5673 -448 3528 228 1 0 chr6 116601674 116602469 -72677085 - L1P5 LINE L1 -876 5270 4475 3307 97 18 6 chr6 116602466 116602477 -72677077 + L1P5 LINE L1 5279 5288 -863 * 180 0 0 0 chr6 116602477 116602497 -72677057 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3307 97 18 6 chr6 116602497 116602993 -72676561 + L1P5 LINE L1 5288 5792 -359 206 103 0 26 chr6 116602993 116603032 -72676522 + (TA)n Simple_repeat Simple_repeat 2 39 0 306 319 0 11 chr6 116603201 116603292 -72676262 - L1MC4 LINE L1 -1339 6703 6614 281 78 137 0 chr6 116603426 116603477 -72676077 - MLT2A1 LTR ERVL -41 403 346 717 108 0 0 chr6 116603481 116603583 -72675971 - MLT2A2 LTR ERVL -351 102 1 241 67 22 22 chr6 116603802 116603847 -72675707 + (TA)n Simple_repeat Simple_repeat 2 46 0 26 30 0 0 chr6 116604105 116604138 -72675416 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr6 116604383 116604412 -72675142 + AT_rich Low_complexity Low_complexity 1 29 0 1076 167 35 0 chr6 116604622 116604849 -72674705 - L1MA7 LINE L1 0 6291 6057 1754 136 131 11 chr6 116604853 116605205 -72674349 - MER57A LTR ERV1 0 403 10 1060 312 77 49 chr6 116605206 116605843 -72673711 - L1M3a LINE L1 -4992 963 309 374 332 20 8 chr6 116605830 116605895 -72673659 - L1M3a LINE L1 -5173 782 719 * 2273 94 3 10 chr6 116605895 116606203 -72673351 + AluSc SINE Alu 1 306 -3 374 332 20 8 chr6 116606203 116606515 -72673039 - L1M3a LINE L1 -5236 719 311 5143 209 157 11 chr6 116607050 116609480 -72670074 - L1PB3 LINE L1 -1 6153 3289 36 0 0 0 chr6 116609485 116609521 -72670033 + AT_rich Low_complexity Low_complexity 1 36 0 5399 188 14 16 chr6 116609608 116611381 -72668173 - L1PA16 LINE L1 -1 6165 4395 213 39 0 0 chr6 116611381 116611407 -72668147 + (TG)n Simple_repeat Simple_repeat 1 26 0 5399 188 14 16 chr6 116611407 116611730 -72667824 - L1PA16 LINE L1 -1771 4395 4073 521 361 129 15 chr6 116611734 116612075 -72667479 - L1M3a LINE L1 -5565 390 11 3474 171 34 0 chr6 116612215 116612868 -72666686 - L1MC1 LINE L1 -1 6332 5658 24 0 0 0 chr6 116613081 116613105 -72666449 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 116613896 116613917 -72665637 + AT_rich Low_complexity Low_complexity 1 21 0 261 362 0 11 chr6 116614404 116614498 -72665056 - MIR SINE MIR -169 93 1 2178 135 0 0 chr6 116614664 116614968 -72664586 + AluSx SINE Alu 1 304 -8 34 0 0 0 chr6 116615089 116615123 -72664431 + AT_rich Low_complexity Low_complexity 1 34 0 204 179 0 0 chr6 116615646 116615685 -72663869 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 573 176 10 0 chr6 116615712 116615814 -72663740 + MLT2B2 LTR ERVL 1 103 -412 450 165 199 126 chr6 116615817 116616072 -72663482 + MLT2B1 LTR ERVL 186 508 -7 25 0 0 0 chr6 116616642 116616667 -72662887 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr6 116616705 116616728 -72662826 + AT_rich Low_complexity Low_complexity 1 23 0 1732 56 0 0 chr6 116616728 116616944 -72662610 - L1PA3 LINE L1 -3 6152 5937 28 0 0 0 chr6 116618076 116618104 -72661450 + AT_rich Low_complexity Low_complexity 1 28 0 22 48 0 48 chr6 116618367 116618429 -72661125 + AT_rich Low_complexity Low_complexity 1 59 0 29 60 0 0 chr6 116618469 116618519 -72661035 + AT_rich Low_complexity Low_complexity 1 50 0 807 264 66 1 chr6 116618529 116619091 -72660463 + L1ME3 LINE L1 5474 6161 -1 26 64 0 0 chr6 116619640 116619687 -72659867 + AT_rich Low_complexity Low_complexity 1 47 0 499 278 172 22 chr6 116620271 116620498 -72659056 - MIR SINE MIR -1 261 1 219 186 0 0 chr6 116621444 116621487 -72658067 + (TG)n Simple_repeat Simple_repeat 2 44 0 27 0 0 0 chr6 116622130 116622157 -72657397 + AT_rich Low_complexity Low_complexity 1 27 0 576 298 44 18 chr6 116623165 116623393 -72656161 - MIR SINE MIR 0 262 29 2100 43 4 0 chr6 116623568 116623822 -72655732 - AluY SINE Alu -16 295 41 222 218 0 0 chr6 116625622 116625677 -72653877 + A-rich Low_complexity Low_complexity 1 55 0 203 250 0 0 chr6 116625735 116625779 -72653775 + (CA)n Simple_repeat Simple_repeat 1 44 0 309 270 157 15 chr6 116626271 116626475 -72653079 + L1MC4a LINE L1 5636 5868 -1940 1383 254 31 65 chr6 116626573 116627081 -72652473 + MLT1D LTR MaLR 1 491 -14 220 27 54 0 chr6 116627774 116627811 -72651743 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1889 146 7 0 chr6 116627815 116628102 -72651452 - AluSx SINE Alu -23 289 1 189 0 0 0 chr6 116629138 116629159 -72650395 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 273 273 0 15 chr6 116629331 116629397 -72650157 + MLT1E-int LTR MaLR 1136 1200 -171 207 139 0 0 chr6 116629536 116629572 -72649982 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 1147 240 47 23 chr6 116629577 116629919 -72649635 - MLT2C1 LTR ERVL -47 350 1 682 305 6 0 chr6 116629995 116630159 -72649395 + MLT1E LTR MaLR 1 165 -428 203 189 0 0 chr6 116630504 116630541 -72649013 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 7239 47 0 0 chr6 116630893 116632002 -72647552 - L1PA5 LINE L1 -4 6150 5041 1503 54 0 0 chr6 116632002 116632188 -72647366 + L1PA5 LINE L1 4838 5023 -1123 2377 28 0 10 chr6 116633777 116634066 -72645488 + L1PA4 LINE L1 5870 6155 0 679 340 5 0 chr6 116634240 116634452 -72645102 - MIR SINE MIR -2 260 48 21 0 0 0 chr6 116634849 116634870 -72644684 + AT_rich Low_complexity Low_complexity 1 21 0 2262 98 0 6 chr6 116634960 116635275 -72644279 + AluSq SINE Alu 1 313 0 21 0 0 0 chr6 116635818 116635839 -72643715 + AT_rich Low_complexity Low_complexity 1 21 0 420 114 14 29 chr6 116636761 116636831 -72642723 - THE1C LTR MaLR -304 71 3 6847 143 48 27 chr6 116637557 116638787 -72640767 - Tigger1 DNA MER2_type 0 2418 1163 315 77 19 0 chr6 116638803 116638855 -72640699 - L1PB2 LINE L1 -1 6150 6098 3308 134 13 11 chr6 116638916 116639459 -72640095 - L1PB2 LINE L1 -19 6132 5589 1423 166 24 10 chr6 116639459 116639748 -72639806 - L1PB2 LINE L1 -1127 5019 4727 6852 155 23 6 chr6 116639757 116640920 -72638634 - Tigger1 DNA MER2_type -1235 1183 1 196 179 0 36 chr6 116641385 116641441 -72638113 + GA-rich Low_complexity Low_complexity 3 56 0 551 245 129 31 chr6 116642320 116642483 -72637071 - MSTB2 LTR MaLR -49 408 200 1991 155 3 9 chr6 116642717 116643066 -72636488 - L1PA15 LINE L1 0 6165 5819 3361 156 14 8 chr6 116643066 116644050 -72635504 + L1PA15 LINE L1 4836 5820 -345 334 286 37 104 chr6 116644062 116644298 -72635256 - MLT1H1 LTR MaLR -321 234 34 233 262 252 9 chr6 116644354 116644461 -72635093 - MIR SINE MIR -120 142 10 509 63 13 25 chr6 116644942 116645021 -72634533 - MADE1 DNA Mariner 0 80 3 182 372 69 21 chr6 116645194 116645339 -72634215 + L2 LINE L2 2577 2728 -586 1356 168 13 0 chr6 116645529 116645761 -72633793 + MER46A DNA MER2_type 1 235 -1 36 62 0 0 chr6 116646290 116646354 -72633200 + AT_rich Low_complexity Low_complexity 1 64 0 1077 105 6 6 chr6 116646356 116646518 -72633036 - L1MA1 LINE L1 -8 6294 6133 1026 248 31 21 chr6 116647279 116647627 -72631927 + MER110 LTR ERV1 1 312 -179 1022 169 26 43 chr6 116647677 116647908 -72631646 - THE1C LTR MaLR 0 375 149 3140 53 0 0 chr6 116647908 116648303 -72631251 - L1PA5 LINE L1 -858 5288 4894 6858 40 1 2 chr6 116648303 116649162 -72630392 + L1PA5 LINE L1 5312 6170 0 1054 89 30 59 chr6 116649162 116649331 -72630223 - THE1C LTR MaLR -211 164 1 21 36 0 0 chr6 116649345 116649373 -72630181 + AT_rich Low_complexity Low_complexity 1 28 0 32 57 0 0 chr6 116649400 116649453 -72630101 + AT_rich Low_complexity Low_complexity 1 53 0 940 189 0 16 chr6 116649536 116649721 -72629833 - AluJb SINE Alu -2 310 129 1405 283 90 34 chr6 116650210 116650741 -72628813 - MLT2E LTR ERVL -14 614 54 23 33 0 0 chr6 116650758 116650788 -72628766 + AT_rich Low_complexity Low_complexity 1 30 0 209 210 16 0 chr6 116652005 116652067 -72627487 + (CA)n Simple_repeat Simple_repeat 2 64 0 22 35 0 0 chr6 116652174 116652203 -72627351 + AT_rich Low_complexity Low_complexity 1 29 0 29 60 0 0 chr6 116652308 116652358 -72627196 + AT_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr6 116652389 116652424 -72627130 + AT_rich Low_complexity Low_complexity 1 35 0 340 234 57 8 chr6 116652889 116653013 -72626541 - L1MA8 LINE L1 -8 6283 6154 569 177 114 40 chr6 116653546 116653721 -72625833 + MER53 DNA DNA 2 189 0 29409 92 10 3 chr6 116654449 116659459 -72620095 - HERVL LTR ERVL -416 5238 144 375 340 158 5 chr6 116659574 116659789 -72619765 + MIR SINE MIR 13 260 -2 23 33 0 0 chr6 116659884 116659914 -72619640 + AT_rich Low_complexity Low_complexity 1 30 0 21816 40 23 1 chr6 116660129 116663797 -72615757 + L1P LINE L1 3 3792 -2354 2445 21 0 0 chr6 116663793 116664078 -72615476 - L1P LINE L1 -1490 4656 4372 * 7353 19 26 1 chr6 116664078 116665109 -72614445 + L1PA2 LINE L1 5102 6154 -1 33 0 0 0 chr6 116665373 116665406 -72614148 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr6 116665453 116665476 -72614078 + AT_rich Low_complexity Low_complexity 1 23 0 2716 67 22 0 chr6 116665491 116665850 -72613704 - L1PA6 LINE L1 -5 6149 5783 2725 31 0 0 chr6 116665950 116666269 -72613285 - L1PA4 LINE L1 -55 6100 5782 1585 58 0 0 chr6 116666269 116666475 -72613079 + HERVL-A1 LTR ERVL 5449 5654 0 3209 99 2 5 chr6 116666475 116666920 -72612634 + MLT2A1 LTR ERVL 1 444 0 466 289 66 69 chr6 116667110 116667473 -72612081 + L1MEd LINE L1 758 1119 -5000 744 251 89 46 chr6 116667493 116667796 -72611758 - MLT1C LTR MaLR -92 375 60 387 288 56 10 chr6 116667817 116668015 -72611539 + L1ME3A LINE L1 5731 5937 -233 209 176 0 0 chr6 116668221 116668255 -72611299 + (TG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr6 116668545 116668568 -72610986 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr6 116668735 116668767 -72610787 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr6 116668976 116669004 -72610550 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 116671175 116671196 -72608358 + AT_rich Low_complexity Low_complexity 1 21 0 234 222 16 16 chr6 116671297 116671360 -72608194 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 1473 209 42 29 chr6 116674236 116674619 -72604935 + MLT1B LTR MaLR 1 388 -2 217 361 21 10 chr6 116674746 116674843 -72604711 + L3 LINE CR1 1453 1550 -27 1526 127 75 16 chr6 116674853 116675106 -72604448 - AluSc SINE Alu -10 299 32 4077 118 63 52 chr6 116676774 116677540 -72602014 - LTR1 LTR ERV1 0 785 12 311 247 0 0 chr6 116678227 116678300 -72601254 - MLT1I LTR MaLR 0 409 337 890 281 98 24 chr6 116680499 116680908 -72598646 - MER110 LTR ERV1 -41 450 12 336 143 0 0 chr6 116681011 116681067 -72598487 + (TA)n Simple_repeat Simple_repeat 2 57 0 372 253 11 0 chr6 116681067 116681158 -72598396 - L1MC4 LINE L1 -1339 6703 6612 624 296 60 22 chr6 116681174 116681441 -72598113 - MER110-int LTR ERV1 -19 4628 4352 496 292 41 33 chr6 116681466 116681709 -72597845 - MER110-int LTR ERV1 -1239 3408 3164 1769 170 0 3 chr6 116681709 116682013 -72597541 + AluJb SINE Alu 1 303 0 1987 142 16 67 chr6 116682222 116682610 -72596944 - MLT1B LTR MaLR 0 390 23 242 247 62 41 chr6 116682611 116682708 -72596846 - MLT1-int LTR MaLR -366 1005 907 450 363 45 3 chr6 116682965 116683257 -72596297 - L1MEc LINE L1 -5981 415 112 542 340 98 48 chr6 116684316 116684757 -72594797 + LTR33 LTR ERVL 56 518 -3 2209 113 3 25 chr6 116684787 116685107 -72594447 - AluSq SINE Alu 0 313 1 557 326 68 40 chr6 116685309 116685662 -72593892 + L2 LINE L2 2928 3290 -23 24 0 0 0 chr6 116686796 116686820 -72592734 + AT_rich Low_complexity Low_complexity 1 24 0 39 0 0 0 chr6 116687124 116687163 -72592391 + AT_rich Low_complexity Low_complexity 1 39 0 1869 154 38 35 chr6 116687882 116688251 -72591303 - THE1C LTR MaLR -5 370 1 5041 121 11 7 chr6 116688251 116688998 -72590556 - THE1C-int LTR MaLR 0 1580 831 226 269 0 0 chr6 116688999 116689051 -72590503 + LTR30 LTR ERV1 1 52 -670 626 132 92 175 chr6 116689054 116689305 -72590249 + LTR12 LTR ERV1 56 285 -429 300 235 0 0 chr6 116689306 116689374 -72590180 + LTR30 LTR ERV1 553 620 -102 765 165 25 0 chr6 116689374 116689495 -72590059 + LTR12 LTR ERV1 355 478 -236 4974 151 49 1 chr6 116689496 116690293 -72589261 - THE1C-int LTR MaLR -745 835 1 1986 140 21 49 chr6 116690293 116690403 -72589151 - THE1C LTR MaLR 0 375 263 2280 129 56 0 chr6 116690403 116690760 -72588794 + MER51B LTR ERV1 1 377 0 1986 140 21 49 chr6 116690760 116691035 -72588519 - THE1C LTR MaLR -112 263 1 518 289 103 75 chr6 116691616 116692329 -72587225 - LTR50 LTR ERVL -128 667 2 1349 280 71 34 chr6 116692611 116693146 -72586408 + MLT1H1 LTR MaLR 1 555 0 25 65 0 0 chr6 116693242 116693288 -72586266 + AT_rich Low_complexity Low_complexity 1 46 0 230 218 58 0 chr6 116693315 116693402 -72586152 + A-rich Low_complexity Low_complexity 1 92 0 25 31 0 0 chr6 116693497 116693529 -72586025 + AT_rich Low_complexity Low_complexity 1 32 0 2014 99 6 69 chr6 116693921 116694254 -72585300 - AluSq SINE Alu -1 312 1 1770 39 26 35 chr6 116694487 116694717 -72584837 + AluY SINE Alu 84 311 0 2107 96 7 3 chr6 116694729 116695022 -72584532 + AluSc SINE Alu 1 294 -15 240 35 0 0 chr6 116695028 116695057 -72584497 + (TA)n Simple_repeat Simple_repeat 1 29 0 1684 264 102 19 chr6 116695146 116695684 -72583870 + MLT1E LTR MaLR 8 590 -3 1075 329 81 14 chr6 116695735 116696292 -72583262 + L2 LINE L2 1990 2583 -731 184 280 120 0 chr6 116696483 116696583 -72582971 + L2 LINE L2 3104 3215 -98 3324 169 48 48 chr6 116696723 116697508 -72582046 - LTR1 LTR ERV1 0 785 1 27 62 0 0 chr6 116697513 116697561 -72581993 + AT_rich Low_complexity Low_complexity 1 48 0 2270 160 77 2 chr6 116698269 116698750 -72580804 - L1MA8 LINE L1 -5 6286 5770 1075 207 9 5 chr6 116699105 116699318 -72580236 - MER67C LTR ERV1 -311 399 186 5609 117 314 34 chr6 116699321 116700647 -72578907 - pTR5 LTR ERV1 0 2438 741 1699 181 38 24 chr6 116700681 116701051 -72578503 + THE1C LTR MaLR 1 375 0 506 145 222 0 chr6 116701054 116701171 -72578383 - MER67D LTR ERV1 -370 144 2 336 211 74 11 chr6 116701171 116701264 -72578290 + MLT1E3 LTR MaLR 405 503 -121 2441 22 0 0 chr6 116702940 116703218 -72576336 - L1P1 LINE L1 -415 5740 5463 704 195 0 16 chr6 116703218 116703346 -72576208 + Tigger7 DNA MER2_type 2362 2487 -4 270 0 0 0 chr6 116704559 116704589 -72574965 + (CA)n Simple_repeat Simple_repeat 2 31 0 6899 57 7 17 chr6 116704700 116706015 -72573539 - L1PA7 LINE L1 -13 6141 4829 31 68 0 0 chr6 116706016 116706075 -72573479 + AT_rich Low_complexity Low_complexity 1 59 0 202 309 52 52 chr6 116706619 116706755 -72572799 - MIR SINE MIR -120 142 7 763 193 8 23 chr6 116707290 116707551 -72572003 + CT-rich Low_complexity Low_complexity 1 257 0 233 160 0 60 chr6 116707551 116707601 -72571953 + T-rich Low_complexity Low_complexity 2 48 0 31 44 0 0 chr6 116709022 116709067 -72570487 + AT_rich Low_complexity Low_complexity 1 45 0 397 179 11 11 chr6 116709097 116709192 -72570362 + GA-rich Low_complexity Low_complexity 3 97 0 1412 313 28 13 chr6 116709192 116709800 -72569754 - L2 LINE L2 -909 2405 1789 2876 160 46 49 chr6 116709910 116710524 -72569030 + LTR9 LTR ERV1 1 612 0 5861 66 33 3 chr6 116710782 116711539 -72568015 - LTR17 LTR ERV1 0 780 1 282 319 84 0 chr6 116711608 116711727 -72567827 - L2 LINE L2 -1523 1791 1663 * 473 249 124 17 chr6 116711726 116711903 -72567651 + L2 LINE L2 3111 3306 -7 273 323 58 72 chr6 116711953 116712176 -72567378 + MIR3 SINE MIR 3 222 -40 265 336 50 14 chr6 116713586 116713726 -72565828 + MIR SINE MIR 79 223 -39 249 162 0 0 chr6 116714481 116714518 -72565036 + MSTA LTR MaLR 1 37 -391 2476 115 54 7 chr6 116714614 116715023 -72564531 + MSTA LTR MaLR 1 428 0 792 240 64 0 chr6 116715575 116715779 -72563775 + MLT1E1 LTR MaLR 65 281 -373 834 293 138 13 chr6 116715829 116716133 -72563421 + L2 LINE L2 2528 2869 -445 383 236 8 147 chr6 116716145 116716403 -72563151 + L2 LINE L2 3092 3313 0 21 36 0 0 chr6 116717079 116717107 -72562447 + AT_rich Low_complexity Low_complexity 1 28 0 951 299 51 88 chr6 116717125 116718050 -72561504 + L1M3c LINE L1 11 901 -5240 1687 201 8 45 chr6 116718216 116718595 -72560959 - MLT1A1 LTR MaLR 0 365 1 579 226 75 29 chr6 116721615 116721810 -72557744 + L1MCb LINE L1 212 602 -5655 424 211 42 0 chr6 116721847 116721942 -72557612 + L1MCb LINE L1 500 598 -5447 3825 260 82 39 chr6 116721963 116724588 -72554966 + L1MCb LINE L1 2516 5380 -1184 1190 82 12 6 chr6 116725899 116726069 -72553485 + L1PA14 LINE L1 5987 6157 -4 3955 214 36 21 chr6 116726450 116727846 -72551708 - L1MC/D LINE L1 -744 5402 4175 297 0 0 0 chr6 116728156 116728189 -72551365 + (TG)n Simple_repeat Simple_repeat 1 33 0 3044 184 40 27 chr6 116728260 116728959 -72550595 + MER67C LTR ERV1 3 710 0 1450 214 71 40 chr6 116728975 116729396 -72550158 + MER57B LTR ERV1 1 434 0 23 0 0 0 chr6 116729990 116730013 -72549541 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr6 116730340 116730382 -72549172 + AT_rich Low_complexity Low_complexity 1 42 0 240 188 0 87 chr6 116731275 116731344 -72548210 - L1MC4 LINE L1 -1339 6703 6641 21 0 0 0 chr6 116731424 116731445 -72548109 + AT_rich Low_complexity Low_complexity 1 21 0 1308 189 54 31 chr6 116731447 116731797 -72547757 + L1MA8 LINE L1 5934 6291 0 821 288 58 40 chr6 116732029 116732376 -72547178 - L2 LINE L2 0 3313 2961 208 338 50 0 chr6 116732387 116732467 -72547087 - L2 LINE L2 -591 2723 2640 23 54 0 0 chr6 116732579 116732616 -72546938 + AT_rich Low_complexity Low_complexity 1 37 0 2259 81 0 10 chr6 116732675 116732972 -72546582 - AluY SINE Alu -17 294 1 1143 210 16 0 chr6 116732981 116733224 -72546330 - L1MC1 LINE L1 -15 6318 6072 941 238 68 82 chr6 116733225 116733591 -72545963 - MER57A LTR ERV1 -1 402 42 1678 281 75 47 chr6 116733597 116734399 -72545155 - MER57-int LTR ERV1 -393 7144 6321 673 233 30 136 chr6 116734951 116735281 -72544273 - MER57-int LTR ERV1 -1336 6201 5907 2420 229 59 47 chr6 116735600 116736584 -72542970 - MER57-int LTR ERV1 -1504 3432 2164 1865 143 168 11 chr6 116736587 116736957 -72542597 + MSTA LTR MaLR 1 428 0 2842 162 4 2 chr6 116736957 116737450 -72542104 + MSTA-int LTR MaLR 1 494 -1157 496 169 229 0 chr6 116737450 116737568 -72541986 + MSTA LTR MaLR 256 400 -28 1984 117 0 7 chr6 116738129 116738411 -72541143 - AluSx SINE Alu -19 293 14 2249 56 25 0 chr6 116738737 116739023 -72540531 + AluY SINE Alu 6 298 -13 25 31 0 0 chr6 116739301 116739333 -72540221 + AT_rich Low_complexity Low_complexity 1 32 0 1296 178 44 62 chr6 116740196 116740365 -72539189 - L1P5 LINE L1 -673 5478 5307 198 0 0 0 chr6 116740365 116740387 -72539167 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1296 178 44 62 chr6 116740387 116740696 -72538858 - L1P5 LINE L1 -844 5307 5031 4563 111 6 4 chr6 116740696 116741018 -72538536 + L1PB1 LINE L1 5464 5784 -367 333 118 0 0 chr6 116741018 116741069 -72538485 + (TA)n Simple_repeat Simple_repeat 1 51 0 4563 111 6 4 chr6 116741069 116741432 -72538122 + L1PB1 LINE L1 5784 6150 -1 183 100 0 0 chr6 116741677 116741707 -72537847 + (T)n Simple_repeat Simple_repeat 1 30 0 1107 308 62 17 chr6 116742844 116743260 -72536294 + L2 LINE L2 2489 2923 -391 6497 155 24 5 chr6 116743450 116745313 -72534241 - L1MA2 LINE L1 0 7723 5822 4635 127 4 1 chr6 116745313 116746031 -72533523 + L1PA14 LINE L1 5442 6161 0 902 201 21 21 chr6 116746031 116746225 -72533329 - L1MA2 LINE L1 -7357 208 15 5389 227 34 33 chr6 116747360 116749384 -72530170 + L1MA4 LINE L1 14 2034 -4294 2116 89 0 60 chr6 116749384 116749700 -72529854 - AluY SINE Alu -14 297 1 5389 227 34 33 chr6 116749700 116750385 -72529169 + L1MA4 LINE L1 2034 2717 -3611 5238 196 67 22 chr6 116750378 116750742 -72528812 + L1MA4 LINE L1 3308 3654 -2674 * 3591 67 0 6 chr6 116750742 116751217 -72528337 + L1PA5 LINE L1 5683 6154 0 5238 196 67 22 chr6 116751217 116752234 -72527320 + L1MA4 LINE L1 3654 4751 -1577 2614 174 36 7 chr6 116752253 116752806 -72526748 + L1MA4 LINE L1 5907 6475 -7 1399 318 49 22 chr6 116753205 116753761 -72525793 - MLT1E LTR MaLR -22 571 1 252 232 71 0 chr6 116753865 116753921 -72525633 + L2 LINE L2 3254 3313 0 983 318 74 36 chr6 116753979 116754508 -72525046 + MLT1H LTR MaLR 1 549 0 227 216 68 14 chr6 116754517 116754591 -72524963 - L1MD3 LINE L1 -17 7978 7901 225 139 0 0 chr6 116754751 116754794 -72524760 + (A)n Simple_repeat Simple_repeat 1 43 0 328 301 97 37 chr6 116754896 116755112 -72524442 - L1M4 LINE L1 -3584 2562 2334 22 0 0 0 chr6 116755986 116756008 -72523546 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr6 116756039 116756076 -72523478 + AT_rich Low_complexity Low_complexity 1 37 0 5281 155 16 0 chr6 116756094 116757011 -72522543 - L1PA15 LINE L1 -9 6156 5226 10310 219 40 19 chr6 116757011 116759661 -72519893 + L1PA15 LINE L1 2524 5229 -917 303 232 40 30 chr6 116760087 116760186 -72519368 - Charlie8 DNA MER1_type -2010 407 308 1443 231 94 23 chr6 116760441 116760919 -72518635 + LTR1B LTR ERV1 1 580 -347 407 214 71 0 chr6 116760917 116761015 -72518539 + LTR1B LTR ERV1 722 826 0 * 630 329 94 51 chr6 116761343 116761738 -72517816 - LTR16C LTR ERVL 0 491 80 357 105 18 18 chr6 116762072 116762129 -72517425 - MLT1A1 LTR MaLR -300 65 9 245 361 14 0 chr6 116764700 116764772 -72514782 + L2 LINE L2 3200 3272 0 24 53 0 0 chr6 116766415 116766453 -72513101 + AT_rich Low_complexity Low_complexity 1 38 0 2988 186 20 22 chr6 116766453 116767045 -72512509 - MER6A DNA MER2_type 0 605 15 201 136 45 45 chr6 116767080 116767146 -72512408 + (CATATA)n Simple_repeat Simple_repeat 5 70 0 4723 194 70 10 chr6 116767300 116767583 -72511971 + L1MC2 LINE L1 4635 4899 -1445 216 67 0 0 chr6 116767583 116767613 -72511941 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 4723 194 70 10 chr6 116767613 116768882 -72510672 + L1MC2 LINE L1 4899 6293 -51 1394 132 9 9 chr6 116768882 116769095 -72510459 + AluSq SINE Alu 82 294 -19 28 48 0 0 chr6 116769095 116769137 -72510417 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr6 116769244 116769270 -72510284 + AT_rich Low_complexity Low_complexity 1 26 0 2042 131 3 10 chr6 116769724 116770038 -72509516 - AluSq SINE Alu -1 312 1 1750 115 73 0 chr6 116772430 116772732 -72506822 - AluSc SINE Alu 0 321 1 763 296 139 39 chr6 116773051 116773491 -72506063 + MLT1H LTR MaLR 53 536 -13 282 312 43 14 chr6 116773673 116773811 -72505743 + MIR SINE MIR 75 216 -46 21 0 0 0 chr6 116773912 116773933 -72505621 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 116774041 116774072 -72505482 + AT_rich Low_complexity Low_complexity 1 31 0 30 59 0 0 chr6 116774102 116774153 -72505401 + AT_rich Low_complexity Low_complexity 1 51 0 437 285 0 0 chr6 116774359 116774496 -72505058 + L1MD2 LINE L1 3781 3917 -2229 320 237 12 0 chr6 116774530 116774624 -72504930 + L1MD2 LINE L1 4264 4358 -1788 1925 134 64 3 chr6 116774634 116774963 -72504591 + MER61C LTR ERV1 86 434 0 905 289 107 11 chr6 116774963 116775486 -72504068 + L1MD2 LINE L1 4340 4912 -1234 2690 250 48 50 chr6 116775520 116776501 -72503053 + L1MD2 LINE L1 5121 6104 -255 363 96 0 0 chr6 116776501 116776553 -72503001 + (TA)n Simple_repeat Simple_repeat 2 53 0 2690 250 48 50 chr6 116776553 116776798 -72502756 + L1MD2 LINE L1 6104 6348 -11 509 346 66 50 chr6 116778413 116778869 -72500685 + L1M3c LINE L1 1 463 -5678 3679 198 32 72 chr6 116778943 116778996 -72500558 + L1MA10 LINE L1 4562 4616 -1718 2226 110 0 0 chr6 116778996 116779287 -72500267 - AluY SINE Alu -18 293 3 3679 198 32 72 chr6 116779287 116780657 -72498897 + L1MA10 LINE L1 4616 5894 -440 1567 227 36 8 chr6 116780657 116780851 -72498703 + MSTD LTR MaLR 2 189 -207 189 0 0 0 chr6 116780851 116780872 -72498682 + (TC)n Simple_repeat Simple_repeat 1 21 0 1567 227 36 8 chr6 116780872 116781061 -72498493 + MSTD LTR MaLR 189 396 0 3679 198 32 72 chr6 116781061 116781484 -72498070 + L1MA10 LINE L1 5894 6333 -1 216 67 0 0 chr6 116781533 116781563 -72497991 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 200 341 97 28 chr6 116781735 116781952 -72497602 + L2 LINE L2 1201 1432 -1882 214 270 0 0 chr6 116781967 116782030 -72497524 + A-rich Low_complexity Low_complexity 1 63 0 22 35 0 0 chr6 116782326 116782355 -72497199 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr6 116783284 116783314 -72496240 + AT_rich Low_complexity Low_complexity 1 30 0 314 232 61 20 chr6 116783427 116783526 -72496028 - L1ME3A LINE L1 -221 5949 5847 254 338 61 38 chr6 116783598 116783811 -72495743 - L1ME3A LINE L1 -2053 5755 5538 371 347 52 19 chr6 116783879 116784092 -72495462 - L1ME3A LINE L1 -686 5484 5265 760 152 28 0 chr6 116784451 116784596 -72494958 - L1MB1 LINE L1 -1 6167 6019 6679 169 18 29 chr6 116784685 116785994 -72493560 + L1P LINE L1 3759 5052 -1094 599 252 99 14 chr6 116786629 116786851 -72492703 - L1ME2 LINE L1 0 6164 5924 2380 137 6 6 chr6 116787202 116787566 -72491988 + THE1B LTR MaLR 1 364 0 442 265 125 19 chr6 116788243 116788507 -72491047 + LTR43 LTR ERV1 187 478 -124 208 309 0 74 chr6 116788613 116788694 -72490860 - L3 LINE CR1 -198 1379 1305 22 35 0 0 chr6 116788745 116788774 -72490780 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr6 116788806 116788834 -72490720 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr6 116788977 116789015 -72490539 + AT_rich Low_complexity Low_complexity 1 38 0 383 327 101 5 chr6 116789331 116789548 -72490006 - MIR SINE MIR -22 240 3 319 245 138 11 chr6 116790448 116790636 -72488918 - L1MEc LINE L1 -4060 2336 2125 1603 292 38 30 chr6 116790640 116791632 -72487922 - L1ME LINE L1 -648 5514 4508 252 143 0 0 chr6 116791704 116791746 -72487808 + (TA)n Simple_repeat Simple_repeat 1 42 0 326 256 0 0 chr6 116791749 116791839 -72487715 - L1MC4 LINE L1 -1339 6703 6614 226 177 0 48 chr6 116791808 116791870 -72487684 + L1MCa LINE L1 2006 2064 -4362 * 238 261 0 23 chr6 116791866 116791954 -72487600 - L1MC4 LINE L1 -1340 6702 6617 * 279 281 0 0 chr6 116791904 116791993 -72487561 + L1MC4 LINE L1 6615 6703 -1339 231 322 0 0 chr6 116791973 116792063 -72487491 - L1MC4 LINE L1 -1339 6703 6614 * 241 133 33 50 chr6 116792004 116792064 -72487490 + L1MCa LINE L1 2006 2064 -4362 225 143 0 0 chr6 116792091 116792133 -72487421 - LTR66 LTR ERVL -171 439 398 279 0 0 0 chr6 116792136 116792167 -72487387 + (TG)n Simple_repeat Simple_repeat 2 32 0 2069 130 3 0 chr6 116792475 116792792 -72486762 - AluSp SINE Alu 0 318 1 2015 212 33 44 chr6 116793375 116793408 -72486146 - MLT2B1 LTR ERVL -8 512 480 387 0 0 0 chr6 116793408 116793451 -72486103 + (TG)n Simple_repeat Simple_repeat 2 44 0 2015 212 33 44 chr6 116793451 116793935 -72485619 - MLT2B1 LTR ERVL -40 480 1 1422 114 5 5 chr6 116794023 116794243 -72485311 + L1PA13 LINE L1 5941 6160 -3 28 60 0 15 chr6 116794253 116794285 -72485269 + AT_rich Low_complexity Low_complexity 1 32 -34 1929 127 7 3 chr6 116794285 116794568 -72484986 + AluSx SINE Alu 2 285 -27 28 60 0 15 chr6 116794568 116794602 -72484952 + AT_rich Low_complexity Low_complexity 32 66 0 282 309 43 0 chr6 116794726 116794820 -72484734 - L1ME LINE L1 -294 5827 5730 725 342 46 32 chr6 116794923 116795356 -72484198 - LTR67 LTR ERVL -96 461 23 316 274 80 9 chr6 116795547 116795660 -72483894 + LTR33 LTR ERVL 102 222 -299 1951 134 53 39 chr6 116795863 116796222 -72483332 - THE1B LTR MaLR 0 364 1 25643 151 13 14 chr6 116796893 116803340 -72476214 + L1PA8 LINE L1 1 6487 0 1016 378 53 11 chr6 116803383 116804131 -72475423 - L2 LINE L2 -733 2581 1802 291 254 0 0 chr6 116804133 116804196 -72475358 + MER69 DNA AcHobo 2 64 -2462 2114 87 0 11 chr6 116806488 116806800 -72472754 - AluY SINE Alu 0 309 1 35767 56 5 1 chr6 116806822 116812207 -72467347 - L1PA5 LINE L1 -4 6150 749 1188 254 43 17 chr6 116814523 116814662 -72464892 + L1MCc LINE L1 84 218 -6205 5166 78 10 1 chr6 116814662 116815378 -72464176 + LTR30 LTR ERV1 1 722 0 1188 254 43 17 chr6 116815378 116815584 -72463970 + L1MCc LINE L1 218 438 -5985 405 252 51 103 chr6 116815657 116815891 -72463663 + L1MCc LINE L1 653 874 -5549 768 245 47 16 chr6 116816024 116816277 -72463277 + L1MCc LINE L1 1056 1316 -5107 598 252 65 18 chr6 116816395 116816785 -72462769 + L1MCc LINE L1 1381 1536 -4887 275 245 49 20 chr6 116816777 116816879 -72462675 + L1MCc LINE L1 3777 3881 -3060 * 2329 81 3 0 chr6 116817985 116818282 -72461272 + AluSc SINE Alu 1 298 -11 28 0 0 0 chr6 116818579 116818607 -72460947 + AT_rich Low_complexity Low_complexity 1 28 0 29 90 0 0 chr6 116819878 116819956 -72459598 + AT_rich Low_complexity Low_complexity 1 78 0 401 280 9 9 chr6 116820112 116820219 -72459335 - L2 LINE L2 -1174 2140 2034 1316 314 25 54 chr6 116820480 116821031 -72458523 - MLT1G LTR MaLR -5 585 51 238 346 63 0 chr6 116821198 116821325 -72458229 - L2 LINE L2 -31 3282 3148 1906 336 51 21 chr6 116822086 116823176 -72456378 + L2 LINE L2 2034 3155 -158 410 133 0 0 chr6 116823247 116823307 -72456247 - MER58C DNA MER1_type -5 210 151 235 225 11 79 chr6 116823374 116823463 -72456091 - MER58C DNA MER1_type -85 130 48 253 282 0 13 chr6 116823534 116823612 -72455942 + HAL1b LINE L1 662 738 -610 22 0 0 0 chr6 116823819 116823841 -72455713 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 116823905 116823934 -72455620 + AT_rich Low_complexity Low_complexity 1 29 0 495 124 31 21 chr6 116823985 116824082 -72455472 + L1MA8 LINE L1 6049 6146 -145 3766 153 16 18 chr6 116824085 116824770 -72454784 - L1MA4 LINE L1 -6 6294 5611 1671 157 24 38 chr6 116824771 116825280 -72454274 + L1MA4 LINE L1 5091 5596 -709 743 164 21 0 chr6 116825280 116825400 -72454154 + L1MA8 LINE L1 6130 6272 -19 1671 157 24 38 chr6 116825400 116825414 -72454140 + L1MA8 LINE L1 5596 5609 -696 21 57 0 0 chr6 116826096 116826131 -72453423 + AT_rich Low_complexity Low_complexity 1 35 0 845 154 124 97 chr6 116826201 116826468 -72453086 + LTR12 LTR ERV1 1 274 -440 378 192 30 20 chr6 116826472 116826571 -72452983 + LTR30 LTR ERV1 544 643 -79 557 147 53 0 chr6 116826573 116826668 -72452886 + LTR12 LTR ERV1 615 714 0 22 35 0 0 chr6 116828155 116828184 -72451370 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 116828547 116828576 -72450978 + AT_rich Low_complexity Low_complexity 1 29 0 279 0 0 0 chr6 116829792 116829823 -72449731 + (CA)n Simple_repeat Simple_repeat 2 32 0 496 115 0 26 chr6 116829926 116830004 -72449550 + L1ME LINE L1 5571 5646 -520 1017 242 45 20 chr6 116830007 116830307 -72449247 - MLT1D LTR MaLR 0 505 208 1447 213 30 30 chr6 116830307 116830668 -72448886 - L1MA7 LINE L1 -10 6281 5921 1523 184 91 6 chr6 116830670 116830872 -72448682 + MER7A DNA MER2_type 2 240 -2798 1204 125 43 65 chr6 116830872 116831104 -72448450 - MER30 DNA MER1_type 0 230 4 1523 184 91 6 chr6 116831104 116831221 -72448333 + MER7A DNA MER2_type 240 346 0 1583 238 66 26 chr6 116832253 116833091 -72446463 - L1MCc LINE L1 -4887 1159 658 355 319 0 0 chr6 116833174 116833268 -72446286 - L1MCc LINE L1 -5509 537 444 333 262 94 88 chr6 116833480 116833706 -72445848 - L1MCc LINE L1 -5635 410 180 3460 191 32 3 chr6 116833706 116834396 -72445158 + MER67C LTR ERV1 1 710 0 333 262 94 88 chr6 116834396 116834531 -72445023 - L1MCc LINE L1 -5865 180 47 701 212 0 8 chr6 116834682 116834814 -72444740 + FLAM_C SINE Alu 1 131 -2 14377 189 53 22 chr6 116836371 116842139 -72437415 - L1PB1 LINE L1 -8 6859 884 22 0 0 0 chr6 116843464 116843486 -72436068 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr6 116843564 116843609 -72435945 + AT_rich Low_complexity Low_complexity 1 45 0 2368 73 0 3 chr6 116843666 116843969 -72435585 - AluY SINE Alu -9 302 1 200 146 36 36 chr6 116844024 116844079 -72435475 + T-rich Low_complexity Low_complexity 4 58 0 226 340 21 35 chr6 116846386 116846527 -72433027 - MIR SINE MIR -26 236 98 892 266 126 23 chr6 116846542 116846843 -72432711 + MLT1E2 LTR MaLR 1 332 -294 1796 151 24 3 chr6 116846881 116847173 -72432381 - AluJb SINE Alu -14 298 1 1180 84 30 0 chr6 116848021 116848187 -72431367 - L1P4 LINE L1 -346 5822 5652 1592 201 31 57 chr6 116848313 116848474 -72431080 + MER92A LTR ERV1 1 165 -247 282 29 0 0 chr6 116848474 116848509 -72431045 + (CA)n Simple_repeat Simple_repeat 1 35 0 1592 201 31 57 chr6 116848509 116848770 -72430784 + MER92A LTR ERV1 165 412 0 572 276 100 13 chr6 116849779 116849818 -72429736 - L1MA9 LINE L1 -38 6274 6240 195 42 0 0 chr6 116849818 116849842 -72429712 + (TA)n Simple_repeat Simple_repeat 1 24 0 572 276 100 13 chr6 116849842 116850041 -72429513 - L1MA9 LINE L1 -72 6240 6015 2030 125 3 0 chr6 116851371 116851660 -72427894 + AluSq SINE Alu 1 290 -23 21 36 0 0 chr6 116851686 116851714 -72427840 + AT_rich Low_complexity Low_complexity 1 28 0 2198 95 0 0 chr6 116852349 116852634 -72426920 + AluSc SINE Alu 1 285 -24 22 0 0 0 chr6 116852634 116852656 -72426898 + AT_rich Low_complexity Low_complexity 1 22 0 927 261 138 47 chr6 116853532 116854019 -72425535 - MER65B LTR ERV1 0 531 1 1292 202 34 21 chr6 116854229 116854601 -72424953 - Tigger3(Golem) DNA MER2_type 0 3038 21 1904 138 35 0 chr6 116854767 116855056 -72424498 - AluSq SINE Alu -14 299 1 819 320 61 23 chr6 116855766 116856160 -72423394 + HsTC2a DNA Tc2 22 430 -314 852 227 62 9 chr6 116856198 116856423 -72423131 + MER34 LTR ERV1 27 263 -279 2154 160 45 30 chr6 116856423 116856963 -72422591 - MLT2A2 LTR ERVL 0 554 1 824 198 45 50 chr6 116856994 116857216 -72422338 + MER34 LTR ERV1 321 541 -1 619 272 116 11 chr6 116857216 116857483 -72422071 + HsTC2a DNA Tc2 440 734 -8 289 323 30 0 chr6 116858001 116858100 -72421454 + L2 LINE L2 3208 3309 -4 213 264 0 19 chr6 116858266 116858319 -72421235 + GA-rich Low_complexity Low_complexity 3 54 0 22 35 0 0 chr6 116859202 116859231 -72420323 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 116859409 116859432 -72420122 + AT_rich Low_complexity Low_complexity 1 23 0 231 220 0 0 chr6 116860598 116860657 -72418897 + L1MC4 LINE L1 6645 6703 -1339 182 356 114 15 chr6 116860772 116860904 -72418650 - L2 LINE L2 -21 3251 3107 1703 200 22 48 chr6 116861091 116861491 -72418063 + MLT1B LTR MaLR 1 390 0 26 50 0 0 chr6 116861595 116861635 -72417919 + AT_rich Low_complexity Low_complexity 1 40 0 236 244 98 0 chr6 116862056 116862138 -72417416 + L1MC4 LINE L1 6616 6705 -1337 491 224 7 0 chr6 116862139 116862282 -72417272 + (TA)n Simple_repeat Simple_repeat 1 144 0 379 202 18 0 chr6 116862320 116862434 -72417120 + (TA)n Simple_repeat Simple_repeat 1 116 0 231 329 12 0 chr6 116862660 116862742 -72416812 - MIR SINE MIR -2 260 178 312 377 52 22 chr6 116863820 116864051 -72415503 - L2 LINE L2 -494 2820 2583 234 0 0 0 chr6 116864082 116864108 -72415446 + (GA)n Simple_repeat Simple_repeat 2 27 0 218 32 32 0 chr6 116864107 116864138 -72415416 + (TG)n Simple_repeat Simple_repeat 2 33 0 * 667 256 55 32 chr6 116864215 116864479 -72415075 + L1MCa LINE L1 1 232 -5813 580 263 34 38 chr6 116864485 116864694 -72414860 + L1MCa LINE L1 356 563 -5482 2061 213 30 53 chr6 116864713 116864998 -72414556 + L1MC3 LINE L1 5506 5773 -2012 954 186 29 0 chr6 116864998 116865202 -72414352 + L1MA3 LINE L1 6094 6303 -2 2061 213 30 53 chr6 116865202 116865485 -72414069 + L1MC3 LINE L1 5773 6061 -1724 25 31 0 0 chr6 116865957 116865989 -72413565 + AT_rich Low_complexity Low_complexity 1 32 0 2310 55 24 0 chr6 116866267 116866560 -72412994 - AluY SINE Alu -6 305 6 1984 117 0 7 chr6 116866886 116867168 -72412386 + AluSx SINE Alu 14 293 -19 480 178 229 0 chr6 116867729 116867847 -72411707 - MSTA LTR MaLR -28 400 256 2842 162 4 2 chr6 116867847 116868340 -72411214 - MSTA-int LTR MaLR -1157 494 1 1865 143 168 11 chr6 116868340 116868710 -72410844 - MSTA LTR MaLR 0 428 1 2381 234 58 47 chr6 116868713 116869698 -72409856 + MER57-int LTR ERV1 2164 5821 -1504 667 233 30 139 chr6 116870017 116870348 -72409206 + MER57-int LTR ERV1 5907 6201 -1336 1678 281 75 47 chr6 116870900 116871702 -72407852 + MER57-int LTR ERV1 6321 7144 -393 939 238 68 82 chr6 116871708 116872074 -72407480 + MER57A LTR ERV1 42 402 -1 1100 218 16 0 chr6 116872075 116872318 -72407236 + L1MC1 LINE L1 6072 6318 -15 2245 81 0 10 chr6 116872327 116872623 -72406931 + AluY SINE Alu 1 293 -18 23 54 0 0 chr6 116872682 116872719 -72406835 + AT_rich Low_complexity Low_complexity 1 37 0 208 338 50 0 chr6 116872831 116872911 -72406643 + L2 LINE L2 2640 2723 -591 807 291 58 40 chr6 116872922 116873269 -72406285 + L2 LINE L2 2961 3313 0 1331 186 54 31 chr6 116873501 116873851 -72405703 - L1MA8 LINE L1 0 6291 5934 21 0 0 0 chr6 116873853 116873874 -72405680 + AT_rich Low_complexity Low_complexity 1 21 0 240 188 0 87 chr6 116873953 116874022 -72405532 + L1MC4 LINE L1 6641 6703 -1339 21 71 0 0 chr6 116874915 116874957 -72404597 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr6 116875284 116875307 -72404247 + AT_rich Low_complexity Low_complexity 1 23 0 1444 213 71 43 chr6 116875901 116876323 -72403231 - MER57B LTR ERV1 0 434 1 3058 183 40 27 chr6 116876339 116877038 -72402516 - MER67C LTR ERV1 0 710 3 261 0 0 0 chr6 116877109 116877138 -72402416 + (CA)n Simple_repeat Simple_repeat 1 29 0 2108 117 17 0 chr6 116877608 116877908 -72401646 - AluSc SINE Alu -4 305 1 237 250 0 0 chr6 116878260 116878308 -72401246 + CT-rich Low_complexity Low_complexity 3 50 0 221 191 0 21 chr6 116879363 116879410 -72400144 + A-rich Low_complexity Low_complexity 4 49 0 21 57 0 0 chr6 116879768 116879803 -72399751 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr6 116880386 116880416 -72399138 + AT_rich Low_complexity Low_complexity 1 30 0 1151 139 0 0 chr6 116880419 116880613 -72398941 + L1PA13 LINE L1 5168 5361 -785 2374 133 22 5 chr6 116880614 116881019 -72398535 + L1PA13 LINE L1 5752 6163 0 4558 65 10 18 chr6 116881479 116882520 -72397034 + MER11A LTR ERVK 1 1266 0 28 61 0 0 chr6 116882648 116882697 -72396857 + AT_rich Low_complexity Low_complexity 1 49 0 2177 123 0 0 chr6 116882806 116883099 -72396455 - AluSx SINE Alu -19 293 1 21 71 0 0 chr6 116883496 116883538 -72396016 + AT_rich Low_complexity Low_complexity 1 42 0 306 50 0 0 chr6 116884272 116884312 -72395242 + (CAT)n Simple_repeat Simple_repeat 2 41 0 1945 118 0 54 chr6 116884363 116884676 -72394878 + AluSc SINE Alu 1 296 -13 848 210 49 29 chr6 116885061 116885266 -72394288 + MER58A DNA MER1_type 10 218 -6 198 167 0 0 chr6 116885379 116885415 -72394139 + T-rich Low_complexity Low_complexity 1 36 0 24 67 0 0 chr6 116885489 116885534 -72394020 + AT_rich Low_complexity Low_complexity 1 45 0 397 332 102 12 chr6 116886463 116886797 -72392757 - L1ME3A LINE L1 -319 5851 5488 183 42 0 0 chr6 116886803 116886827 -72392727 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3800 159 5 3 chr6 116887423 116888097 -72391457 - L1MA4A LINE L1 0 6303 5629 10806 183 17 5 chr6 116888097 116890255 -72389299 + L1PA13 LINE L1 3129 5311 -835 2773 94 20 5 chr6 116890260 116890653 -72388901 + MLT2A1 LTR ERVL 2 400 -44 318 120 0 0 chr6 116890707 116890757 -72388797 + MLT2A1 LTR ERVL 395 444 0 2409 111 3 3 chr6 116890757 116891125 -72388429 + L1PA13 LINE L1 5312 5679 -489 344 46 92 11 chr6 116891126 116891213 -72388341 + (TTATA)n Simple_repeat Simple_repeat 4 97 0 3024 87 15 46 chr6 116891213 116891694 -72387860 + L1PA13 LINE L1 5694 6159 -4 4464 179 2 1 chr6 116891777 116892563 -72386991 - L1PA15 LINE L1 -16 6852 6066 846 219 107 0 chr6 116892568 116892773 -72386781 - L1PA15 LINE L1 -1938 4911 4685 1066 195 3 91 chr6 116892788 116893096 -72386458 - L1PA15 LINE L1 -4023 2826 2546 1302 226 54 0 chr6 116893189 116893347 -72386207 - AluJo SINE Alu -18 294 113 204 40 0 0 chr6 116893347 116893372 -72386182 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1302 226 54 0 chr6 116893372 116893492 -72386062 - AluJo SINE Alu -199 113 1 29 28 0 0 chr6 116893637 116893673 -72385881 + AT_rich Low_complexity Low_complexity 1 36 0 205 132 19 19 chr6 116894016 116894069 -72385485 + (TA)n Simple_repeat Simple_repeat 1 53 0 978 291 167 7 chr6 116894491 116894911 -72384643 - LTR50 LTR ERVL -302 493 7 297 221 125 0 chr6 116895488 116895592 -72383962 + L1ME3A LINE L1 6046 6162 -8 235 289 0 36 chr6 116895983 116896066 -72383488 + (CATATA)n Simple_repeat Simple_repeat 2 81 0 31 44 0 0 chr6 116896966 116897011 -72382543 + AT_rich Low_complexity Low_complexity 1 45 0 462 311 37 6 chr6 116898471 116898632 -72380922 - MIR SINE MIR -49 213 48 2122 129 0 0 chr6 116898659 116898962 -72380592 + AluSx SINE Alu 1 303 -9 778 351 76 11 chr6 116899263 116899722 -72379832 - MLT1J LTR MaLR -8 503 15 188 196 0 20 chr6 116901510 116901561 -72377993 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 28 48 0 0 chr6 116901691 116901733 -72377821 + AT_rich Low_complexity Low_complexity 1 42 0 709 253 56 0 chr6 116902197 116902395 -72377159 + MER3 DNA MER1_type 1 209 0 21 36 0 0 chr6 116902642 116902670 -72376884 + AT_rich Low_complexity Low_complexity 1 28 0 33 0 0 0 chr6 116903913 116903946 -72375608 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr6 116903982 116904013 -72375541 + AT_rich Low_complexity Low_complexity 1 31 0 236 250 0 0 chr6 116904102 116904154 -72375400 + (TG)n Simple_repeat Simple_repeat 1 52 0 435 242 27 20 chr6 116904802 116904951 -72374603 - L1M4 LINE L1 -1745 4401 4252 768 288 60 25 chr6 116904962 116905077 -72374477 - L1MEc LINE L1 -4416 2706 2597 2378 171 12 16 chr6 116905077 116905503 -72374051 + MSTB LTR MaLR 3 426 0 768 288 60 25 chr6 116905503 116905755 -72373799 - L1MEc LINE L1 -4525 2597 2326 3068 174 30 0 chr6 116905820 116906356 -72373198 + ERVL-B1 LTR ERVL 4781 5332 -432 825 153 0 21 chr6 116906344 116906488 -72373066 + ERVL-B1 LTR ERVL 5617 5757 -7 * 1695 200 32 5 chr6 116906488 116906946 -72372608 + MLT2B1 LTR ERVL 1 520 0 572 273 81 50 chr6 116906971 116907194 -72372360 - L1MEc LINE L1 -4809 2132 1918 378 42 0 0 chr6 116907194 116907242 -72372312 + (TG)n Simple_repeat Simple_repeat 1 48 0 572 273 81 50 chr6 116907242 116907462 -72372092 - L1MEc LINE L1 -5023 1918 1675 361 336 58 39 chr6 116907553 116907913 -72371641 - L1MEc LINE L1 -5794 629 263 269 192 19 0 chr6 116907963 116908015 -72371539 - L1MCa LINE L1 -6274 152 100 1716 214 25 24 chr6 116908237 116908861 -72370693 + MLT2B1 LTR ERVL 1 515 0 23 0 0 0 chr6 116909011 116909034 -72370520 + AT_rich Low_complexity Low_complexity 1 23 0 29 78 0 0 chr6 116909673 116909737 -72369817 + AT_rich Low_complexity Low_complexity 1 64 0 1083 191 0 11 chr6 116909906 116910094 -72369460 - AluJo SINE Alu -75 237 52 22 0 0 0 chr6 116910205 116910227 -72369327 + AT_rich Low_complexity Low_complexity 1 22 0 383 216 70 113 chr6 116910295 116910508 -72369046 - L1MC4 LINE L1 -1 8041 7838 348 294 4 82 chr6 116910509 116910648 -72368906 - L1MC4 LINE L1 -289 7753 7638 1859 130 7 36 chr6 116910648 116910955 -72368599 + AluSx SINE Alu 5 302 -10 348 294 4 82 chr6 116910955 116911046 -72368508 - L1MC4 LINE L1 -404 7638 7541 21 95 0 0 chr6 116911061 116911124 -72368430 + AT_rich Low_complexity Low_complexity 1 63 0 813 195 85 17 chr6 116911280 116911516 -72368038 - L1MEc LINE L1 -4302 2238 1987 1754 89 11 50 chr6 116911534 116911815 -72367739 + L1PA13 LINE L1 5875 6144 -19 1115 289 23 0 chr6 116911918 116912222 -72367332 + MER93a LTR ERV1 92 402 0 350 254 115 9 chr6 116912222 116912385 -72367169 - L1MEc LINE L1 -4563 1977 1822 327 286 119 27 chr6 116912827 116913012 -72366542 - L1MEc LINE L1 -6128 412 211 4168 169 59 1 chr6 116914258 116915090 -72364464 - L1MA6 LINE L1 -4 6296 5417 4772 177 29 1 chr6 116915099 116916081 -72363473 - L1MA6 LINE L1 -1007 5139 4131 1085 341 82 15 chr6 116916233 116916755 -72362799 - MLT2E LTR ERVL -32 596 40 5056 91 10 0 chr6 116916932 116917613 -72361941 - LTR12 LTR ERV1 0 688 1 22 80 0 0 chr6 116918943 116918993 -72360561 + AT_rich Low_complexity Low_complexity 1 50 0 360 0 0 0 chr6 116918994 116919034 -72360520 + (TG)n Simple_repeat Simple_repeat 2 41 0 207 340 97 28 chr6 116919723 116919867 -72359687 - L2 LINE L2 -7 3306 3153 358 398 32 0 chr6 116919977 116920193 -72359361 - L2 LINE L2 -957 2357 2135 2089 101 10 10 chr6 116921816 116922113 -72357441 - AluSg SINE Alu -13 297 1 21 0 0 0 chr6 116922914 116922935 -72356619 + AT_rich Low_complexity Low_complexity 1 21 0 983 200 195 33 chr6 116923112 116923454 -72356100 + MER51A LTR ERV1 257 640 0 21 0 0 0 chr6 116923690 116923711 -72355843 + AT_rich Low_complexity Low_complexity 1 21 0 368 343 43 31 chr6 116924145 116924399 -72355155 + MLT1H LTR MaLR 23 279 -270 238 322 20 48 chr6 116924821 116924967 -72354587 + L2 LINE L2 2749 2890 -424 442 336 86 34 chr6 116925106 116925398 -72354156 + L2 LINE L2 2988 3294 -19 1329 194 25 22 chr6 116925451 116925765 -72353789 + L1MA10 LINE L1 6011 6325 -9 191 350 12 25 chr6 116925860 116925940 -72353614 - MIR SINE MIR -147 115 37 25 0 0 0 chr6 116928137 116928162 -72351392 + AT_rich Low_complexity Low_complexity 1 25 0 6969 193 101 20 chr6 116928812 116930362 -72349192 - MER52A LTR ERV1 -2 1753 1 373 357 62 18 chr6 116932950 116933177 -72346377 + L1MC/D LINE L1 5500 5736 -2072 29 60 0 0 chr6 116933746 116933796 -72345758 + AT_rich Low_complexity Low_complexity 1 50 0 1079 127 12 6 chr6 116933980 116934146 -72345408 - THE1B LTR MaLR 0 364 198 1691 90 4 0 chr6 116934146 116934380 -72345174 - THE1B-int LTR MaLR -1343 237 3 632 202 0 0 chr6 116934381 116934490 -72345064 - THE1B LTR MaLR 0 364 256 201 74 0 0 chr6 116934775 116934802 -72344752 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 570 337 50 10 chr6 116937586 116937886 -72341668 - MER69 DNA AcHobo -905 321 10 344 325 67 14 chr6 116938200 116938483 -72341071 + L1ME4a LINE L1 5543 5840 -281 303 330 133 23 chr6 116938985 116939203 -72340351 - MIR SINE MIR -1 261 20 23 33 0 0 chr6 116939639 116939669 -72339885 + AT_rich Low_complexity Low_complexity 1 30 0 1853 172 63 5 chr6 116941107 116941502 -72338052 + L1MA8 LINE L1 5768 6185 -106 2470 169 27 13 chr6 116941502 116941953 -72337601 - LTR32 LTR ERVL 0 471 15 372 174 112 0 chr6 116941953 116942051 -72337503 + L1MA8 LINE L1 6181 6289 -2 888 95 61 20 chr6 116944773 116944920 -72334634 + L1PB1 LINE L1 5999 6151 0 1885 122 22 0 chr6 116945471 116945749 -72333805 + AluSp SINE Alu 1 284 -29 315 0 0 0 chr6 116945753 116945788 -72333766 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 592 279 148 27 chr6 116945935 116946565 -72332989 + L1ME3A LINE L1 5282 5949 -213 204 125 0 0 chr6 116946994 116947026 -72332528 + (TC)n Simple_repeat Simple_repeat 1 32 0 635 197 0 61 chr6 116947239 116947371 -72332183 + FLAM_A SINE Alu 1 124 -9 24 0 0 0 chr6 116947371 116947395 -72332159 + AT_rich Low_complexity Low_complexity 1 24 0 1568 120 120 11 chr6 116947842 116948108 -72331446 - AluSg1 SINE Alu -14 295 1 267 194 54 11 chr6 116948737 116948830 -72330724 + (TA)n Simple_repeat Simple_repeat 1 97 0 205 175 0 25 chr6 116949842 116949882 -72329672 + CT-rich Low_complexity Low_complexity 2 40 0 545 189 22 81 chr6 116949883 116950068 -72329486 - Charlie1b DNA MER1_type -22 501 328 1143 179 13 34 chr6 116950068 116950302 -72329252 + L1MA7 LINE L1 5630 5858 -433 1962 185 68 29 chr6 116950302 116950820 -72328734 + MLT2A2 LTR ERVL 1 554 0 1763 177 34 44 chr6 116950820 116951256 -72328298 + L1MA7 LINE L1 5854 6285 -6 1344 229 56 3 chr6 116951274 116951579 -72327975 - Charlie1b DNA MER1_type -201 322 2 1659 154 98 50 chr6 116952255 116952496 -72327058 - Tigger7 DNA MER2_type -2 2485 2257 2042 110 0 27 chr6 116952496 116952797 -72326757 + AluY SINE Alu 1 293 -18 1659 154 98 50 chr6 116952797 116953001 -72326553 - Tigger7 DNA MER2_type -230 2257 68 298 200 18 0 chr6 116953138 116953193 -72326361 - MER58A DNA MER1_type -24 83 28 306 335 76 32 chr6 116953945 116954130 -72325424 + MLT1K LTR MaLR 334 526 -62 380 269 50 34 chr6 116954261 116954380 -72325174 - MER70-int LTR ERVL -1498 4266 4146 225 0 0 0 chr6 116955138 116955163 -72324391 + (T)n Simple_repeat Simple_repeat 1 25 0 847 335 39 15 chr6 116955477 116955886 -72323668 - MER70-int LTR ERVL -3398 2366 1948 200 254 32 32 chr6 116956259 116956322 -72323232 + MER5A DNA MER1_type 22 84 -105 1353 182 87 45 chr6 116956326 116956684 -72322870 + THE1C LTR MaLR 3 375 0 8904 145 20 39 chr6 116956684 116958294 -72321260 + THE1C-int LTR MaLR 1 1580 0 1398 165 65 56 chr6 116958296 116958618 -72320936 + THE1C LTR MaLR 5 329 -46 27 29 0 0 chr6 116960643 116960677 -72318877 + AT_rich Low_complexity Low_complexity 1 34 0 31 0 0 0 chr6 116960710 116960741 -72318813 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 116961030 116961051 -72318503 + AT_rich Low_complexity Low_complexity 1 21 0 1326 229 10 30 chr6 116961055 116961357 -72318197 - AluJo SINE Alu -14 298 3 54 62 0 0 chr6 116961395 116961491 -72318063 + AT_rich Low_complexity Low_complexity 1 96 0 266 299 35 89 chr6 116961631 116962093 -72317461 - L1M4 LINE L1 -1842 4304 3868 1619 142 221 14 chr6 116963773 116964126 -72315428 - MSTA LTR MaLR 0 428 3 197 364 0 0 chr6 116965144 116965199 -72314355 + L2 LINE L2 3247 3301 -12 24 32 0 0 chr6 116965802 116965833 -72313721 + AT_rich Low_complexity Low_complexity 1 31 0 403 332 57 39 chr6 116967663 116968049 -72311505 - MER70-int LTR ERVL -2936 2087 1695 1416 167 10 43 chr6 116969258 116969563 -72309991 - L1MD3 LINE L1 -310 7685 7391 740 271 23 27 chr6 116969565 116969786 -72309768 + MER58A DNA MER1_type 2 221 -3 1311 277 132 29 chr6 116969790 116970578 -72308976 - L1MC4a LINE L1 -605 7180 6312 1679 193 3 3 chr6 116970655 116970960 -72308594 - AluJo SINE Alu -2 310 6 212 100 25 0 chr6 116971136 116971176 -72308378 + (TA)n Simple_repeat Simple_repeat 2 42 0 2782 287 32 30 chr6 116971676 116972196 -72307358 + L1MCa LINE L1 43 491 -5554 1944 141 0 3 chr6 116972196 116972513 -72307041 - AluSx SINE Alu 0 316 1 2782 287 32 30 chr6 116972513 116973037 -72306517 + L1MCa LINE L1 491 1012 -5033 6544 209 66 35 chr6 116973038 116974630 -72304924 + MER52A LTR ERV1 2 1753 -2 571 272 96 63 chr6 116974632 116975047 -72304507 + L1MCa LINE L1 1010 1438 -5126 496 162 22 22 chr6 116975057 116975193 -72304361 + GA-rich Low_complexity Low_complexity 4 139 0 1271 222 48 30 chr6 116975197 116975827 -72303727 + L1MCa LINE L1 1395 2130 -4434 694 287 110 2 chr6 116975922 116976345 -72303209 + L1MCa LINE L1 2296 2809 -3936 1820 194 27 11 chr6 116976352 116976723 -72302831 + LTR45B LTR ERV1 113 489 0 67 102 0 0 chr6 116978497 116978732 -72300822 + AT_rich Low_complexity Low_complexity 1 235 0 34 89 0 0 chr6 116978777 116978867 -72300687 + AT_rich Low_complexity Low_complexity 1 90 0 1926 156 18 24 chr6 116979246 116979585 -72299969 + MER1B DNA MER1_type 1 337 0 1986 149 3 0 chr6 116979624 116979925 -72299629 + AluSx SINE Alu 1 302 -10 252 212 61 0 chr6 116980027 116980093 -72299461 - MLT1J1 LTR MaLR -284 162 93 26 30 0 0 chr6 116980349 116980382 -72299172 + AT_rich Low_complexity Low_complexity 1 33 0 1630 216 26 17 chr6 116980555 116980907 -72298647 - MSTB1 LTR MaLR 0 432 78 6893 219 48 33 chr6 116980916 116982182 -72297372 - MSTB1-int LTR MaLR -9 1642 345 2810 6 0 0 chr6 116982182 116982493 -72297061 - AluYa5 SINE Alu 0 311 1 6893 219 48 33 chr6 116982493 116982844 -72296710 - MSTB1-int LTR MaLR -1306 345 1 2009 170 48 17 chr6 116982844 116983262 -72296292 - MSTB1 LTR MaLR 0 432 2 186 209 0 0 chr6 116984139 116984182 -72295372 + (TG)n Simple_repeat Simple_repeat 2 44 0 32 26 0 0 chr6 116984576 116984615 -72294939 + AT_rich Low_complexity Low_complexity 1 39 0 27 81 0 0 chr6 116985291 116985353 -72294201 + AT_rich Low_complexity Low_complexity 1 62 0 877 244 109 20 chr6 116985718 116986120 -72293434 - Charlie5 DNA MER1_type -2057 555 118 30 83 0 0 chr6 116986240 116986312 -72293242 + AT_rich Low_complexity Low_complexity 1 72 0 4371 176 49 20 chr6 116986434 116987659 -72291895 + L1MA9 LINE L1 4898 6159 -153 1058 304 89 40 chr6 116987713 116988052 -72291502 - Zaphod DNA AcHobo -3309 722 340 2111 90 4 0 chr6 116988052 116988350 -72291204 - AluSc SINE Alu 0 299 1 1058 304 89 40 chr6 116988350 116988591 -72290963 - Zaphod DNA AcHobo -3691 340 112 228 318 19 47 chr6 116989467 116989574 -72289980 + MIR SINE MIR 30 133 -75 1048 139 33 19 chr6 116989714 116989929 -72289625 - L1MA7 LINE L1 0 6291 6074 209 191 0 24 chr6 116990568 116990610 -72288944 + GA-rich Low_complexity Low_complexity 1 41 0 24 91 0 0 chr6 116990643 116990709 -72288845 + AT_rich Low_complexity Low_complexity 1 66 0 204 386 71 38 chr6 116991241 116991425 -72288129 - L2 LINE L2 -4 3268 3079 22 70 0 0 chr6 116991918 116991961 -72287593 + AT_rich Low_complexity Low_complexity 1 43 0 7696 25 0 0 chr6 116992681 116993666 -72285888 + L1PA3 LINE L1 5168 6152 -3 200 93 0 70 chr6 116994375 116994418 -72285136 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 216 0 0 0 chr6 116994450 116994474 -72285080 + (CTA)n Simple_repeat Simple_repeat 3 26 0 350 288 56 25 chr6 116994492 116994652 -72284902 + L1ME3A LINE L1 5465 5629 -533 1143 105 0 15 chr6 116994658 116995347 -72284207 + (TTC)n Simple_repeat Simple_repeat 1 678 0 2045 150 0 0 chr6 116995350 116995644 -72283910 - AluSx SINE Alu -18 294 1 859 308 66 6 chr6 116995686 116996170 -72283384 + L1ME3A LINE L1 5651 6163 -7 398 284 43 67 chr6 116996418 116996626 -72282928 - L1MEc LINE L1 -6172 224 22 200 297 47 0 chr6 116998603 116998667 -72280887 + MER5B DNA MER1_type 112 178 0 705 266 71 6 chr6 116998761 116999100 -72280454 - Charlie5 DNA MER1_type 0 2624 2264 421 237 15 30 chr6 116999180 116999315 -72280239 - MER3 DNA MER1_type -87 122 37 214 360 80 0 chr6 116999378 116999503 -72280051 - MIR SINE MIR -108 154 20 26 0 0 0 chr6 117000969 117000995 -72278559 + AT_rich Low_complexity Low_complexity 1 26 0 228 314 0 47 chr6 117001196 117001282 -72278272 + MIR SINE MIR 48 129 -133 22 70 0 0 chr6 117001522 117001565 -72277989 + AT_rich Low_complexity Low_complexity 1 43 0 548 154 0 0 chr6 117002629 117002720 -72276834 - LTR24B LTR ERV1 -115 461 371 23 68 0 0 chr6 117002960 117003004 -72276550 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr6 117003057 117003081 -72276473 + AT_rich Low_complexity Low_complexity 1 24 0 240 353 120 35 chr6 117004993 117005620 -72273934 + HAL1 LINE L1 12 691 -1816 1240 296 58 51 chr6 117006172 117007146 -72272408 + HAL1 LINE L1 1051 2030 -477 23 33 0 0 chr6 117008218 117008248 -72271306 + AT_rich Low_complexity Low_complexity 1 30 0 1094 208 8 0 chr6 117008255 117008496 -72271058 - L1MA4 LINE L1 -20 6280 6038 312 306 54 33 chr6 117009076 117009318 -72270236 + L1MEc LINE L1 1844 2090 -4306 2702 248 28 11 chr6 117009336 117010255 -72269299 + L1MEc LINE L1 2469 3403 -2812 3338 191 35 1 chr6 117010258 117010919 -72268635 + L1MEc LINE L1 3810 4492 -1723 3999 193 37 49 chr6 117010928 117012352 -72267202 - L1MA4A LINE L1 0 6303 4895 15160 45 3 0 chr6 117012352 117014994 -72264560 + L1PA4 LINE L1 3510 6155 0 3038 206 26 13 chr6 117015007 117016160 -72263394 + L1MA6 LINE L1 4694 6059 -310 473 134 24 0 chr6 117016160 117016242 -72263312 + MER61E LTR ERV1 2 85 -484 230 210 145 0 chr6 117016449 117016511 -72263043 + MER51A LTR ERV1 211 281 -353 524 229 62 47 chr6 117016524 117016825 -72262729 + MER61D LTR ERV1 200 1232 -29 918 182 31 0 chr6 117016898 117017090 -72262464 + L1MA6 LINE L1 6062 6259 -110 7120 138 80 13 chr6 117017109 117018302 -72261252 + THE1C-int LTR MaLR 309 1580 0 1878 143 26 37 chr6 117018302 117018681 -72260873 + THE1C LTR MaLR 1 375 0 600 225 99 40 chr6 117018681 117018934 -72260620 + L1M4 LINE L1 3643 3910 -2236 * 958 257 48 6 chr6 117018931 117019246 -72260308 + L1MB8 LINE L1 5851 6178 0 21 36 0 0 chr6 117019336 117019364 -72260190 + AT_rich Low_complexity Low_complexity 1 28 0 1200 186 0 25 chr6 117019434 117019670 -72259884 + AluJo SINE Alu 64 293 -19 252 0 0 0 chr6 117019671 117019699 -72259855 + (GA)n Simple_repeat Simple_repeat 1 28 0 21 71 0 0 chr6 117019776 117019818 -72259736 + AT_rich Low_complexity Low_complexity 1 42 0 2240 70 0 14 chr6 117019959 117020270 -72259284 + AluY SINE Alu 1 307 0 2366 34 54 3 chr6 117021779 117022075 -72257479 - AluY SINE Alu 0 311 1 22 35 0 0 chr6 117022344 117022373 -72257181 + AT_rich Low_complexity Low_complexity 1 29 0 334 321 57 88 chr6 117022843 117023139 -72256415 + HAL1b LINE L1 392 678 -670 239 362 94 17 chr6 117023665 117024016 -72255538 - L2 LINE L2 -575 2739 2362 23 0 0 0 chr6 117024263 117024286 -72255268 + AT_rich Low_complexity Low_complexity 1 23 0 22 103 0 0 chr6 117024411 117024489 -72255065 + AT_rich Low_complexity Low_complexity 1 78 0 464 82 0 0 chr6 117024816 117024889 -72254665 + Alu SINE Alu 239 311 0 25 31 0 0 chr6 117025056 117025088 -72254466 + AT_rich Low_complexity Low_complexity 1 32 0 1527 77 10 0 chr6 117025199 117025408 -72254146 + L1PA7 LINE L1 5940 6150 -4 224 227 53 0 chr6 117025660 117025735 -72253819 + A-rich Low_complexity Low_complexity 2 80 0 31 26 0 0 chr6 117026091 117026129 -72253425 + AT_rich Low_complexity Low_complexity 1 38 0 2846 210 7 7 chr6 117027082 117027638 -72251916 - MER41D LTR ERV1 -1 556 1 998 232 126 89 chr6 117028213 117028649 -72250905 + MER41B LTR ERV1 150 601 -34 1505 190 41 36 chr6 117028710 117029074 -72250480 - MER47A DNA MER2_type 0 366 1 273 283 25 76 chr6 117029136 117029334 -72250220 + MER57A LTR ERV1 6 193 -210 1036 292 28 47 chr6 117029378 117029623 -72249931 - L1M4 LINE L1 -6042 500 267 2104 135 0 0 chr6 117029623 117029927 -72249627 - AluSx SINE Alu -3 309 6 1036 292 28 47 chr6 117029927 117030147 -72249407 - L1M4 LINE L1 -6275 267 44 26 0 0 0 chr6 117031007 117031033 -72248521 + AT_rich Low_complexity Low_complexity 1 26 0 329 167 42 0 chr6 117031973 117032045 -72247509 + L1M4 LINE L1 4612 4686 -1460 320 135 0 0 chr6 117034793 117034845 -72244709 + MADE1 DNA Mariner 1 52 -28 306 73 0 0 chr6 117035264 117035305 -72244249 + (TG)n Simple_repeat Simple_repeat 2 42 0 306 0 0 0 chr6 117036385 117036419 -72243135 + (TG)n Simple_repeat Simple_repeat 1 34 0 201 74 0 0 chr6 117037594 117037621 -72241933 + (TTA)n Simple_repeat Simple_repeat 1 27 0 761 273 81 14 chr6 117038997 117039294 -72240260 + MER5C DNA MER1_type 2 318 -6 27 29 0 0 chr6 117041213 117041247 -72238307 + AT_rich Low_complexity Low_complexity 1 34 0 477 314 57 5 chr6 117041306 117041500 -72238054 - MIR SINE MIR 0 262 59 198 381 105 0 chr6 117041618 117041723 -72237831 - L2 LINE L2 -1 3312 3197 1456 218 75 93 chr6 117042316 117043224 -72236330 - LTR28 LTR ERV1 0 1020 1 2183 123 0 0 chr6 117044008 117044316 -72235238 + AluSx SINE Alu 1 308 -4 270 164 0 0 chr6 117045408 117045463 -72234091 + (CA)n Simple_repeat Simple_repeat 2 56 0 29 28 0 0 chr6 117046434 117046470 -72233084 + AT_rich Low_complexity Low_complexity 1 36 0 192 289 96 36 chr6 117046926 117047009 -72232545 - L2 LINE L2 0 3272 3185 1761 133 14 4 chr6 117047200 117047328 -72232226 + AluSg SINE Alu 1 126 -266 221 0 35 0 chr6 117047328 117047357 -72232197 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1761 133 14 4 chr6 117047357 117047617 -72231937 + AluSg SINE Alu 126 392 0 25 0 0 28 chr6 117048614 117048629 -72230925 + AT_rich Low_complexity Low_complexity 1 15 -20 1755 101 116 7 chr6 117048629 117048906 -72230648 - AluSc SINE Alu -2 307 1 25 0 0 28 chr6 117048906 117048926 -72230628 + AT_rich Low_complexity Low_complexity 15 35 0 1656 129 108 4 chr6 117049704 117049982 -72229572 + AluSg1 SINE Alu 2 308 -1 23 0 0 0 chr6 117050012 117050035 -72229519 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 117050273 117050301 -72229253 + AT_rich Low_complexity Low_complexity 1 28 0 355 306 218 8 chr6 117050353 117050614 -72228940 + L2 LINE L2 2982 3297 -16 193 284 45 45 chr6 117050854 117050921 -72228633 + MIR SINE MIR 13 79 -183 325 284 95 7 chr6 117052065 117052213 -72227341 + MLT1I LTR MaLR 13 173 -236 1175 237 167 21 chr6 117052241 117052429 -72227125 - L1ME3A LINE L1 -210 6029 5870 2021 200 22 76 chr6 117052429 117052472 -72227082 - MLT2B1 LTR ERVL 0 520 476 358 36 55 0 chr6 117052472 117052527 -72227027 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 2021 200 22 76 chr6 117052527 117053033 -72226521 - MLT2B1 LTR ERVL -44 476 1 1175 237 167 21 chr6 117053033 117053503 -72226051 - L1ME3A LINE L1 -369 5870 5257 * 33063 56 3 1 chr6 117053497 117058627 -72220927 - L1PA5 LINE L1 -5 6464 10 2223 125 0 0 chr6 117058638 117058950 -72220604 - AluSq SINE Alu -1 312 1 1469 236 102 38 chr6 117059022 117059061 -72220493 - L1ME3A LINE L1 -1037 5178 5143 1365 216 121 51 chr6 117059061 117059487 -72220067 + MLT2B1 LTR ERVL 1 467 -53 333 0 0 0 chr6 117059487 117059524 -72220030 + (CA)n Simple_repeat Simple_repeat 1 37 0 1365 216 121 51 chr6 117059524 117059583 -72219971 + MLT2B1 LTR ERVL 467 520 0 1469 236 102 38 chr6 117059583 117060034 -72219520 - L1ME3A LINE L1 -1072 5143 4643 2118 108 0 3 chr6 117060034 117060329 -72219225 + AluY SINE Alu 1 294 -17 1469 236 102 38 chr6 117060329 117060414 -72219140 - L1ME3A LINE L1 -1572 4643 4565 1918 287 30 17 chr6 117060462 117061184 -72218370 - L1ME3A LINE L1 -5406 990 259 246 32 0 0 chr6 117061339 117061370 -72218184 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 409 192 26 53 chr6 117061420 117061571 -72217983 - L1MC4a LINE L1 -5 7803 7657 1096 155 11 11 chr6 117061587 117061774 -72217780 - AluSg/x SINE Alu -17 295 109 2610 258 80 78 chr6 117061785 117062173 -72217381 - L1MC4a LINE L1 -260 7548 7162 447 120 0 0 chr6 117062173 117062248 -72217306 - L1MA4 LINE L1 -4 6296 6222 2610 258 80 78 chr6 117062248 117063391 -72216163 - L1MC4a LINE L1 -646 7162 6014 22 0 0 0 chr6 117063449 117063471 -72216083 + AT_rich Low_complexity Low_complexity 1 22 0 387 282 8 16 chr6 117063513 117063637 -72215917 - MIR SINE MIR -69 193 71 521 262 99 0 chr6 117063817 117063958 -72215596 + MIR SINE MIR 53 207 -55 22 35 0 0 chr6 117064266 117064295 -72215259 + AT_rich Low_complexity Low_complexity 1 29 0 1930 155 48 3 chr6 117064865 117065219 -72214335 - L1PB4 LINE L1 -2 6154 5785 271 83 0 181 chr6 117065255 117065327 -72214227 - L1PB4 LINE L1 -344 5812 5754 1703 191 48 28 chr6 117065333 117065690 -72213864 - THE1B LTR MaLR 0 364 1 9838 127 14 3 chr6 117065708 117067160 -72212394 - THE1B-int LTR MaLR -113 1467 1 1881 152 42 33 chr6 117067160 117067521 -72212033 - THE1B LTR MaLR 0 364 1 1567 165 0 7 chr6 117067525 117067797 -72211757 - L1P5 LINE L1 -408 5748 5479 333 283 0 0 chr6 117067803 117067895 -72211659 - L1PA16 LINE L1 -18 6148 6057 * 2551 227 38 33 chr6 117067883 117068838 -72210716 - L1M2 LINE L1 -670 6188 3152 2384 211 26 17 chr6 117068837 117069411 -72210143 + L1 LINE L1 3663 4241 -1905 * 282 163 0 0 chr6 117069433 117069476 -72210078 - L1M2 LINE L1 -6799 50 8 28 0 0 0 chr6 117069488 117069516 -72210038 + AT_rich Low_complexity Low_complexity 1 28 0 377 286 0 0 chr6 117070603 117070694 -72208860 + MER110 LTR ERV1 192 282 -209 423 281 20 14 chr6 117070826 117070972 -72208582 + MIR SINE MIR 114 260 -2 381 328 86 14 chr6 117071842 117072467 -72207087 + L1M4 LINE L1 4279 4948 -1198 1719 175 24 68 chr6 117073602 117074014 -72205540 + MSTD LTR MaLR 3 396 0 180 347 27 13 chr6 117074156 117074231 -72205323 - L2 LINE L2 -10 3262 3187 280 329 54 36 chr6 117074262 117074429 -72205125 - L2 LINE L2 -252 3061 2892 214 159 29 29 chr6 117074549 117074618 -72204936 + GA-rich Low_complexity Low_complexity 2 70 0 327 49 0 0 chr6 117075375 117075416 -72204138 + (CA)n Simple_repeat Simple_repeat 2 42 0 2246 108 3 0 chr6 117075825 117076132 -72203422 + AluSq SINE Alu 3 310 -3 1523 144 4 4 chr6 117077626 117077862 -72201692 - AluSx SINE Alu -76 236 1 24 0 0 0 chr6 117077872 117077896 -72201658 + AT_rich Low_complexity Low_complexity 1 24 0 2147 100 10 6 chr6 117078383 117078694 -72200860 - AluSx SINE Alu 0 312 1 37 52 0 0 chr6 117079757 117079815 -72199739 + AT_rich Low_complexity Low_complexity 1 58 0 998 329 27 8 chr6 117080146 117080620 -72198934 + L1MC3 LINE L1 53 535 -5861 27 0 0 0 chr6 117081062 117081089 -72198465 + AT_rich Low_complexity Low_complexity 1 27 0 270 280 140 0 chr6 117081304 117081454 -72198100 + L1MC3 LINE L1 4562 4732 -1483 195 291 81 23 chr6 117083069 117083155 -72196399 + MIR SINE MIR 71 161 -101 22 56 0 0 chr6 117083277 117083313 -72196241 + AT_rich Low_complexity Low_complexity 1 36 0 365 220 50 0 chr6 117083475 117083575 -72195979 + L1MC3 LINE L1 5705 5809 -2045 204 233 0 0 chr6 117083607 117083650 -72195904 + (CATA)n Simple_repeat Simple_repeat 3 45 0 2164 206 29 58 chr6 117083650 117084236 -72195318 + L1MC3 LINE L1 7113 7681 -173 210 71 0 0 chr6 117084536 117084564 -72194990 + (TA)n Simple_repeat Simple_repeat 1 28 0 1130 203 54 8 chr6 117084683 117084944 -72194610 + AluJo SINE Alu 1 273 -39 24 0 0 0 chr6 117084944 117084968 -72194586 + AT_rich Low_complexity Low_complexity 1 24 0 280 278 41 41 chr6 117084968 117085137 -72194417 + HAL1 LINE L1 1404 1572 -935 396 351 71 75 chr6 117085273 117085792 -72193762 - L1MEd LINE L1 -5591 528 12 1717 115 0 61 chr6 117087462 117087768 -72191786 + AluSq SINE Alu 24 312 0 24 77 0 0 chr6 117089648 117089700 -72189854 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr6 117089727 117089758 -72189796 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr6 117089791 117089824 -72189730 + AT_rich Low_complexity Low_complexity 1 33 0 342 303 80 15 chr6 117089947 117090169 -72189385 - L1ME1 LINE L1 -2 6580 6343 201 237 0 0 chr6 117090169 117090228 -72189326 + (TATG)n Simple_repeat Simple_repeat 3 61 0 433 259 99 12 chr6 117090254 117090416 -72189138 - L1ME1 LINE L1 -242 6342 6167 267 277 178 10 chr6 117090469 117090671 -72188883 - L1ME1 LINE L1 -2060 4504 4269 2202 174 38 21 chr6 117090671 117091090 -72188464 + MSTB LTR MaLR 1 426 0 230 296 11 0 chr6 117091090 117091178 -72188376 - L1ME1 LINE L1 -2291 4273 4185 506 216 58 14 chr6 117091199 117091338 -72188216 - L1ME1 LINE L1 -5039 1006 862 1057 258 100 8 chr6 117091340 117091921 -72187633 - L1MEc LINE L1 -3707 3263 2663 570 183 29 23 chr6 117092115 117093242 -72186312 - L1MC3 LINE L1 -2 8177 5599 * 622 288 60 30 chr6 117093237 117093470 -72186084 - L1MEc LINE L1 -5978 881 642 2316 214 41 69 chr6 117093470 117094271 -72185283 - LTR1 LTR ERV1 0 785 7 1325 305 73 7 chr6 117094421 117094873 -72184681 - L1MEc LINE L1 -6376 483 2 273 225 180 0 chr6 117094875 117094964 -72184590 + MER5C DNA MER1_type 220 324 0 352 357 49 0 chr6 117095185 117095328 -72184226 + MIR3 SINE MIR 6 155 -53 28 0 0 0 chr6 117096087 117096115 -72183439 + AT_rich Low_complexity Low_complexity 1 28 0 2237 84 7 3 chr6 117096167 117096465 -72183089 + AluY SINE Alu 1 299 -12 23 0 0 0 chr6 117097271 117097294 -72182260 + AT_rich Low_complexity Low_complexity 1 23 0 509 351 13 36 chr6 117097584 117097809 -72181745 + MIR SINE MIR 40 259 -3 198 118 0 0 chr6 117097920 117097954 -72181600 + (TA)n Simple_repeat Simple_repeat 1 34 0 204 398 0 23 chr6 117099759 117099887 -72179667 + L2 LINE L2 2629 2753 -561 23 0 0 0 chr6 117100590 117100613 -72178941 + AT_rich Low_complexity Low_complexity 1 23 0 1146 73 22 11 chr6 117100976 117101014 -72178540 + (TTTC)n Simple_repeat Simple_repeat 1 218 0 1146 73 22 11 chr6 117101014 117101192 -72178362 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3998 257 69 40 chr6 117101253 117102110 -72177444 - L1MC3 LINE L1 -1198 5342 4511 1512 183 40 81 chr6 117102110 117102557 -72176997 - MSTB1 LTR MaLR -3 429 1 3998 257 69 40 chr6 117102557 117102796 -72176758 - L1MC3 LINE L1 -2029 4511 4280 1608 220 88 0 chr6 117102796 117103160 -72176394 + MSTD LTR MaLR 1 396 0 3998 257 69 40 chr6 117103160 117103713 -72175841 - L1MC3 LINE L1 -2260 4280 3625 1221 41 0 0 chr6 117103713 117103859 -72175695 + L1PA5 LINE L1 6000 6145 -9 3998 257 69 40 chr6 117103859 117104168 -72175386 - L1MC3 LINE L1 -2915 3625 3326 1808 279 100 50 chr6 117104160 117105258 -72174296 - L1MC3 LINE L1 -5191 1349 107 * 2480 70 0 19 chr6 117105258 117105574 -72173980 - AluSg SINE Alu 0 310 1 1808 279 100 50 chr6 117105574 117105687 -72173867 - L1MC3 LINE L1 -6433 107 1 1728 102 8 24 chr6 117105823 117106078 -72173476 - AluSc SINE Alu 0 309 59 368 244 35 26 chr6 117106078 117106193 -72173361 - L1ME LINE L1 -5952 118 3 341 362 79 0 chr6 117106214 117106391 -72173163 + LTR50 LTR ERVL 2 192 -603 270 305 0 0 chr6 117106805 117106887 -72172667 - MERVL LTR ERVL -2703 2782 2701 26 0 0 0 chr6 117107399 117107425 -72172129 + AT_rich Low_complexity Low_complexity 1 26 0 1633 170 29 47 chr6 117107581 117107963 -72171591 - THE1C LTR MaLR 0 375 1 6712 157 16 33 chr6 117107963 117108298 -72171256 - THE1C-int LTR MaLR 0 1580 1241 1724 185 0 0 chr6 117108298 117108574 -72170980 - AluSx SINE Alu -36 276 1 6712 157 16 33 chr6 117108574 117109413 -72170141 - THE1C-int LTR MaLR -339 1241 426 3568 128 4 2 chr6 117109419 117109966 -72169588 - L1PA7 LINE L1 -2299 3847 3300 9729 96 10 3 chr6 117109967 117112194 -72167360 + L1PA7 LINE L1 3857 6149 -5 2086 154 0 20 chr6 117112227 117112583 -72166971 - THE1C-int LTR MaLR -1150 430 82 350 205 0 2 chr6 117112583 117112658 -72166896 - FRAM/FAM SINE Alu -101 74 10 440 244 12 12 chr6 117114143 117114229 -72165325 - Tigger2 DNA MER2_type -10 2708 2623 17731 179 31 19 chr6 117114240 117117602 -72161952 - L1M1 LINE L1 -4102 3463 62 9187 168 56 35 chr6 117117609 117119452 -72160102 - Tigger2 DNA MER2_type -779 1939 58 2093 135 21 0 chr6 117119565 117119899 -72159655 - L1PB1 LINE L1 -53 6098 5758 463 209 139 118 chr6 117120552 117120958 -72158596 + MER110 LTR ERV1 80 473 -8 1295 196 9 77 chr6 117121116 117121443 -72158111 + AluJo SINE Alu 1 305 -7 24 0 0 0 chr6 117121825 117121849 -72157705 + AT_rich Low_complexity Low_complexity 1 24 0 4929 157 23 0 chr6 117121919 117122928 -72156626 - L1PA16 LINE L1 -8 6158 5137 27 29 0 0 chr6 117123782 117123816 -72155738 + AT_rich Low_complexity Low_complexity 1 34 0 634 232 70 80 chr6 117124526 117125026 -72154528 + L1ME3A LINE L1 4415 4915 -1231 611 284 94 56 chr6 117125349 117126008 -72153546 + L1ME3A LINE L1 5268 5951 -219 27 29 0 0 chr6 117126184 117126218 -72153336 + AT_rich Low_complexity Low_complexity 1 34 0 2305 78 0 0 chr6 117126224 117126520 -72153034 + AluY SINE Alu 1 296 -15 330 194 0 0 chr6 117126535 117126597 -72152957 - L1MC4 LINE L1 -1337 6705 6644 23 68 0 0 chr6 117126831 117126875 -72152679 + AT_rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr6 117127312 117127344 -72152210 + AT_rich Low_complexity Low_complexity 1 32 0 261 0 0 0 chr6 117127548 117127577 -72151977 + (TG)n Simple_repeat Simple_repeat 2 30 0 1742 174 48 31 chr6 117127612 117127969 -72151585 - MLT1A1 LTR MaLR 0 365 3 457 262 175 19 chr6 117127969 117128175 -72151379 + LTR50 LTR ERVL 3 240 -555 1958 200 60 72 chr6 117128205 117128705 -72150849 + MLT1D LTR MaLR 1 494 -11 1388 180 19 41 chr6 117128712 117129028 -72150526 + L1MA9 LINE L1 5818 6126 -186 259 318 82 0 chr6 117129032 117129117 -72150437 + LTR50 LTR ERVL 230 321 -474 449 219 202 33 chr6 117129190 117129294 -72150260 + LTR50 LTR ERVL 582 667 -128 1897 198 63 0 chr6 117129294 117129693 -72149861 + MSTB LTR MaLR 1 424 -2 449 219 202 33 chr6 117129693 117129771 -72149783 + LTR50 LTR ERVL 667 795 0 189 74 0 0 chr6 117130008 117130035 -72149519 + (TC)n Simple_repeat Simple_repeat 1 27 0 2063 191 13 26 chr6 117130242 117130702 -72148852 + L1MA9 LINE L1 5710 6163 -149 1375 277 58 26 chr6 117130707 117131484 -72148070 - L1MEc LINE L1 -4186 2210 1409 4477 113 200 20 chr6 117131545 117132871 -72146683 + pTR5 LTR ERV1 743 2438 0 2556 272 97 28 chr6 117132993 117134046 -72145508 - L1MEc LINE L1 -5226 1170 45 23 0 0 0 chr6 117134071 117134094 -72145460 + AT_rich Low_complexity Low_complexity 1 23 0 1269 174 0 0 chr6 117134100 117134295 -72145259 + AluJb SINE Alu 83 277 -35 360 0 0 0 chr6 117134328 117134368 -72145186 + (TTA)n Simple_repeat Simple_repeat 2 41 0 3437 98 0 4 chr6 117134368 117134850 -72144704 - L1PA12 LINE L1 -5 6163 5684 453 314 109 37 chr6 117134913 117135144 -72144410 - L1MEc LINE L1 -4130 2992 2779 243 103 0 0 chr6 117135144 117135183 -72144371 + (TG)n Simple_repeat Simple_repeat 2 40 0 453 314 109 37 chr6 117135183 117135899 -72143655 - L1MEc LINE L1 -4343 2779 1977 807 237 71 89 chr6 117136171 117136563 -72142991 - L1MEc LINE L1 -4911 1512 1128 255 333 10 0 chr6 117136849 117136948 -72142606 - L1MEc LINE L1 -5317 1106 1007 21 36 0 0 chr6 117137257 117137285 -72142269 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr6 117137341 117137375 -72142179 + AT_rich Low_complexity Low_complexity 1 34 0 403 240 33 25 chr6 117137829 117137950 -72141604 + MIR SINE MIR 82 203 -59 22 0 0 0 chr6 117138098 117138120 -72141434 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr6 117139382 117139434 -72140120 + AT_rich Low_complexity Low_complexity 1 52 0 412 230 54 14 chr6 117141211 117141359 -72138195 + L1M4 LINE L1 5008 5161 -985 1839 294 20 30 chr6 117141390 117142087 -72137467 + L1MCb LINE L1 3 692 -5353 2042 283 60 16 chr6 117142225 117143223 -72136331 + L1M4 LINE L1 3086 4127 -2019 1231 171 38 17 chr6 117143277 117143534 -72136020 - MER4-int LTR ERV1 -1485 6271 4608 541 184 18 18 chr6 117143535 117143644 -72135910 - MER49 LTR ERV1 -200 723 615 * 979 194 26 81 chr6 117143624 117143933 -72135621 - MER49 LTR ERV1 -629 294 3 1542 208 67 17 chr6 117143945 117144301 -72135253 - MER49-int LTR ERV1 -1 6757 6384 467 185 269 0 chr6 117144306 117144425 -72135129 - MER49-int LTR ERV1 -624 6134 5984 719 201 5 92 chr6 117144614 117144798 -72134756 - MER4-int LTR ERV1 -4167 3953 3786 2740 165 90 107 chr6 117144994 117146226 -72133328 - MER4-int LTR ERV1 -2158 4173 1722 5841 232 79 3 chr6 117146515 117147788 -72131766 + L1M2 LINE L1 50 1419 -5430 * 12400 200 47 16 chr6 117147771 117151019 -72128535 + L1M2 LINE L1 2623 5962 -886 5673 172 30 32 chr6 117151021 117151348 -72128206 + L1MA4A LINE L1 4126 4452 -1851 1524 203 125 23 chr6 117151348 117151733 -72127821 + MSTA LTR MaLR 5 428 0 8749 160 6 35 chr6 117151735 117153355 -72126199 + MSTA-int LTR MaLR 3 1576 -4 1420 203 162 14 chr6 117153361 117153731 -72125823 + MSTA LTR MaLR 4 428 0 5673 172 30 32 chr6 117153731 117154880 -72124674 + L1MA4A LINE L1 4458 5609 -694 1823 213 70 7 chr6 117154880 117155283 -72124271 - MSTA LTR MaLR 0 428 1 5673 172 30 32 chr6 117155283 117155750 -72123804 + L1MA4A LINE L1 5609 6083 -220 1667 194 7 0 chr6 117155750 117156049 -72123505 - AluSx SINE Alu 0 312 12 5673 172 30 32 chr6 117156049 117156265 -72123289 + L1MA4A LINE L1 6083 6298 -5 1709 171 12 54 chr6 117156632 117157025 -72122529 - MER67C LTR ERV1 -246 268 1 502 126 90 45 chr6 117157320 117157431 -72122123 + MER4A LTR ERV1 1 116 -548 1540 146 36 84 chr6 117157450 117157758 -72121796 + MER4A LTR ERV1 372 664 0 360 291 165 28 chr6 117157759 117157941 -72121613 - L2 LINE L2 -299 3014 2808 368 256 12 0 chr6 117157985 117158067 -72121487 + MER45A DNA AcHobo 42 124 -54 10250 100 5 9 chr6 117158140 117158156 -72121398 + L1P LINE L1 3574 3589 -2557 6294 70 3 5 chr6 117158156 117158825 -72120729 - L1PA7 LINE L1 -3 6151 5531 2202 113 0 0 chr6 117158825 117159126 -72120428 - AluSc SINE Alu -8 301 1 6294 70 3 5 chr6 117159126 117159623 -72119931 - L1PA7 LINE L1 -623 5531 5034 10250 100 5 9 chr6 117159623 117159992 -72119562 + L1P LINE L1 3589 3958 -2188 2337 71 7 0 chr6 117159992 117160287 -72119267 - AluY SINE Alu -14 297 1 10250 100 5 9 chr6 117160287 117161376 -72118178 + L1P LINE L1 3958 5043 -1103 271 208 26 13 chr6 117161395 117161472 -72118082 - L1M4 LINE L1 -1446 4700 4623 208 211 0 0 chr6 117161472 117161510 -72118044 + (ATG)n Simple_repeat Simple_repeat 1 38 0 2041 267 78 21 chr6 117161900 117162657 -72116897 - L1MC3 LINE L1 -1619 6166 5367 829 211 0 0 chr6 117162657 117162813 -72116741 - MSTC LTR MaLR 0 428 273 1162 276 19 14 chr6 117162813 117163240 -72116314 - L1MC3 LINE L1 -2537 3609 3181 369 285 55 106 chr6 117163293 117163528 -72116026 - MIR SINE MIR 0 262 40 28 29 0 0 chr6 117164293 117164328 -72115226 + AT_rich Low_complexity Low_complexity 1 35 0 2394 90 0 0 chr6 117164328 117164639 -72114915 - AluY SINE Alu 0 311 1 1823 27 14 0 chr6 117165360 117165581 -72113973 - L1PA4 LINE L1 -1786 4360 4137 8155 44 20 0 chr6 117165581 117167353 -72112201 + L1PA4 LINE L1 4361 6153 -2 237 125 87 48 chr6 117168368 117168472 -72111082 + (TTAA)n Simple_repeat Simple_repeat 3 110 0 2198 196 33 17 chr6 117168913 117169332 -72110222 - MSTB LTR MaLR 0 426 1 1769 171 68 78 chr6 117170443 117170881 -72108673 - MLT1C LTR MaLR 0 467 34 207 0 0 0 chr6 117170881 117170904 -72108650 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2204 244 82 22 chr6 117171300 117171970 -72107584 + L1MB7 LINE L1 2596 3343 -2803 2096 188 39 5 chr6 117171970 117172384 -72107170 - MSTA LTR MaLR 0 428 1 2204 244 82 22 chr6 117172384 117172681 -72106873 + L1MB7 LINE L1 3343 3621 -2525 1253 202 104 23 chr6 117172677 117173024 -72106530 + L1MB7 LINE L1 5682 6056 -128 * 249 294 153 0 chr6 117173058 117173143 -72106411 + L1MEc LINE L1 171 268 -6128 1375 255 87 5 chr6 117173144 117173560 -72105994 + L1MEc LINE L1 520 969 -5427 223 133 17 17 chr6 117173561 117173621 -72105933 + (TA)n Simple_repeat Simple_repeat 2 61 0 964 280 38 38 chr6 117173674 117174074 -72105480 + L1ME1 LINE L1 5762 6161 -5 524 266 53 18 chr6 117174149 117174598 -72104956 + L1ME2 LINE L1 5470 5932 -242 370 185 62 19 chr6 117174616 117174778 -72104776 + (TA)n Simple_repeat Simple_repeat 2 170 0 507 297 0 0 chr6 117174834 117174989 -72104565 + L1ME2 LINE L1 5998 6152 -12 253 250 0 28 chr6 117174989 117175061 -72104493 + MER21A LTR ERV1 1 70 -861 1647 158 75 39 chr6 117175074 117175436 -72104118 + THE1C LTR MaLR 1 375 0 6363 166 18 48 chr6 117175438 117176675 -72102879 + THE1C-int LTR MaLR 3 1202 -378 1921 143 73 27 chr6 117176675 117177004 -72102550 - THE1B LTR MaLR 0 364 21 2849 121 129 0 chr6 117177005 117177461 -72102093 - THE1-int LTR MaLR -814 766 252 1872 221 87 19 chr6 117177461 117177944 -72101610 + MER21B LTR ERV1 348 863 0 1808 143 55 3 chr6 117178007 117178300 -72101254 + AluSx SINE Alu 1 308 -4 436 359 78 64 chr6 117178472 117178896 -72100658 + L2 LINE L2 2838 3267 -5 205 156 0 0 chr6 117179659 117179691 -72099863 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 23 0 0 0 chr6 117179993 117180016 -72099538 + AT_rich Low_complexity Low_complexity 1 23 0 1705 194 45 0 chr6 117180484 117180814 -72098740 - MER7A DNA MER2_type 0 346 4 378 338 45 16 chr6 117180925 117181113 -72098441 + MIR SINE MIR 18 212 -50 282 266 0 0 chr6 117181753 117181930 -72097624 + (TA)n Simple_repeat Simple_repeat 2 178 0 249 108 0 0 chr6 117182065 117182102 -72097452 + (TA)n Simple_repeat Simple_repeat 2 38 0 350 243 78 0 chr6 117183301 117183404 -72096150 + Charlie1 DNA MER1_type 60 170 -2591 * 1129 216 65 48 chr6 117183403 117183587 -72095967 + Charlie1 DNA MER1_type 2351 2530 -231 1998 154 0 0 chr6 117183587 117183886 -72095668 - AluSx SINE Alu -9 303 5 1129 216 65 48 chr6 117183886 117184100 -72095454 + Charlie1 DNA MER1_type 2530 2756 -5 479 299 17 29 chr6 117184639 117184813 -72094741 + L2 LINE L2 650 821 -2493 2220 144 27 16 chr6 117185229 117185598 -72093956 + THE1C LTR MaLR 1 373 -2 7406 134 144 26 chr6 117185603 117185651 -72093903 + THE1C-int LTR MaLR 1 42 -1538 2170 130 0 0 chr6 117185651 117185951 -72093603 + AluSq SINE Alu 6 305 -8 7406 134 144 26 chr6 117185951 117187315 -72092239 + THE1C-int LTR MaLR 42 1580 0 2269 139 19 16 chr6 117187315 117187689 -72091865 + THE1C LTR MaLR 1 375 0 216 67 0 0 chr6 117187826 117187856 -72091698 + (TCC)n Simple_repeat Simple_repeat 2 31 0 32 0 0 0 chr6 117187954 117187986 -72091568 + AT_rich Low_complexity Low_complexity 1 32 0 661 252 79 5 chr6 117189141 117189355 -72090199 + MER5C DNA MER1_type 6 235 -89 531 259 82 6 chr6 117189356 117189482 -72090072 + MLT1B LTR MaLR 1 138 -252 1198 195 0 39 chr6 117189482 117189548 -72090006 - MLT1A1 LTR MaLR 0 365 298 1649 169 0 44 chr6 117189548 117189877 -72089677 - AluJo SINE Alu 0 316 1 1198 195 0 39 chr6 117189877 117190040 -72089514 - MLT1A1 LTR MaLR -67 298 144 773 268 26 0 chr6 117190111 117190305 -72089249 + MLT1B LTR MaLR 192 390 0 2083 116 0 0 chr6 117190575 117190860 -72088694 - AluSg SINE Alu 0 310 26 208 388 60 0 chr6 117190946 117191080 -72088474 + L2 LINE L2 3160 3301 -12 23 78 0 0 chr6 117191176 117191227 -72088327 + AT_rich Low_complexity Low_complexity 1 51 0 2290 165 12 5 chr6 117191522 117191934 -72087620 - L1PA16 LINE L1 -9 6157 5743 800 335 38 76 chr6 117192140 117192854 -72086700 + L2 LINE L2 2206 2892 -422 456 295 69 35 chr6 117192924 117193240 -72086314 + MLT1F1 LTR MaLR 8 335 -232 449 299 84 14 chr6 117193225 117193439 -72086115 + LTR33 LTR ERVL 280 508 -13 * 220 184 0 0 chr6 117193719 117193757 -72085797 + (CA)n Simple_repeat Simple_repeat 1 38 0 428 311 67 22 chr6 117193815 117194002 -72085552 - MLT1L LTR MaLR -72 543 343 1696 179 10 3 chr6 117194002 117194298 -72085256 - AluJb SINE Alu -14 298 1 428 311 67 22 chr6 117194298 117194335 -72085219 - MLT1L LTR MaLR -272 343 309 1475 206 163 43 chr6 117194338 117194799 -72084755 - LTR1B LTR ERV1 0 826 311 653 223 35 35 chr6 117194846 117195048 -72084506 - LTR1B LTR ERV1 -599 227 26 249 291 47 23 chr6 117195735 117195821 -72083733 - L3 LINE CR1 -194 1383 1296 30 27 0 0 chr6 117196783 117196820 -72082734 + AT_rich Low_complexity Low_complexity 1 37 0 219 368 187 0 chr6 117197034 117197243 -72082311 - L3 LINE CR1 -15 1562 1315 351 0 0 0 chr6 117198294 117198333 -72081221 + (TA)n Simple_repeat Simple_repeat 1 39 0 1149 238 83 54 chr6 117198925 117199370 -72080184 + MLT1C LTR MaLR 10 467 0 25 95 0 0 chr6 117200045 117200119 -72079435 + AT_rich Low_complexity Low_complexity 1 74 0 26 0 0 0 chr6 117200298 117200324 -72079230 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr6 117200413 117200434 -72079120 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 117200514 117200538 -72079016 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr6 117200640 117200671 -72078883 + AT_rich Low_complexity Low_complexity 1 31 0 283 340 136 25 chr6 117200952 117201114 -72078440 - LTR33A LTR ERVL -331 192 13 21 57 0 0 chr6 117201334 117201369 -72078185 + AT_rich Low_complexity Low_complexity 1 35 0 33 66 0 0 chr6 117202014 117202075 -72077479 + AT_rich Low_complexity Low_complexity 1 61 0 31 26 0 0 chr6 117202945 117202983 -72076571 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr6 117203688 117203712 -72075842 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 117204191 117204212 -72075342 + AT_rich Low_complexity Low_complexity 1 21 0 1746 166 31 0 chr6 117205242 117205531 -72074023 - AluSx SINE Alu -14 298 1 327 347 25 25 chr6 117205561 117205682 -72073872 - MIR SINE MIR -111 151 31 347 338 150 10 chr6 117206545 117206752 -72072802 + MIR SINE MIR 12 247 -15 443 317 39 29 chr6 117207245 117207450 -72072104 - L2 LINE L2 -518 2796 2590 899 308 31 0 chr6 117207699 117207959 -72071595 + LTR16A LTR ERVL 139 406 -44 442 393 71 38 chr6 117207982 117208404 -72071150 + L2 LINE L2 2836 3271 -1 207 100 0 0 chr6 117208535 117208565 -72070989 + (TAA)n Simple_repeat Simple_repeat 1 30 0 286 272 81 44 chr6 117208611 117208747 -72070807 - MIR SINE MIR -30 232 92 30 0 0 0 chr6 117208843 117208873 -72070681 + AT_rich Low_complexity Low_complexity 1 30 0 1107 51 0 0 chr6 117208873 117209011 -72070543 - L1PA4 LINE L1 -3 6152 6015 182 118 29 0 chr6 117209509 117209543 -72070011 + GA-rich Low_complexity Low_complexity 1 35 0 2708 16 0 10 chr6 117210307 117210616 -72068938 + AluYb8 SINE Alu 1 306 -12 24 0 0 0 chr6 117211802 117211826 -72067728 + AT_rich Low_complexity Low_complexity 1 24 0 269 146 0 0 chr6 117212110 117212151 -72067403 + MLT2B2 LTR ERVL 475 515 0 597 299 73 73 chr6 117212168 117212868 -72066686 - L1M4 LINE L1 -3316 2830 2131 244 172 39 47 chr6 117213225 117213353 -72066201 + (TA)n Simple_repeat Simple_repeat 2 128 0 * 255 87 11 109 chr6 117213262 117213354 -72066200 + (TTATA)n Simple_repeat Simple_repeat 4 86 0 2832 262 248 31 chr6 117213555 117215455 -72064099 + L1M3e LINE L1 6 2276 -4830 2166 106 0 0 chr6 117215455 117215764 -72063790 + AluSc SINE Alu 2 310 0 2832 262 248 31 chr6 117215764 117216408 -72063146 + L1M3e LINE L1 2276 2779 -4327 8314 203 16 12 chr6 117216478 117219325 -72060229 + L1PA16 LINE L1 3308 6161 -5 2678 249 51 7 chr6 117219357 117220267 -72059287 + L1M3e LINE L1 2840 3785 -3321 1092 206 36 4 chr6 117220254 117220506 -72059048 + L1M3e LINE L1 4798 5057 -2049 * 575 166 79 7 chr6 117220493 117220632 -72058922 + L1MA8 LINE L1 6140 6288 -3 * 37 23 0 0 chr6 117220923 117220967 -72058587 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr6 117221100 117221129 -72058425 + AT_rich Low_complexity Low_complexity 1 29 0 35 78 0 0 chr6 117221414 117221491 -72058063 + AT_rich Low_complexity Low_complexity 1 77 0 251 360 26 0 chr6 117222058 117222172 -72057382 - L2 LINE L2 -5 3308 3192 1736 190 3 7 chr6 117222339 117222644 -72056910 + AluSq SINE Alu 1 304 -9 362 267 33 50 chr6 117224276 117224456 -72055098 + L1MCc LINE L1 26 202 -6221 2335 151 5 0 chr6 117224993 117225364 -72054190 - THE1C LTR MaLR 0 375 3 8810 128 57 46 chr6 117225366 117226928 -72052626 - THE1C-int LTR MaLR 0 1580 2 2126 138 72 0 chr6 117226930 117227279 -72052275 - THE1C LTR MaLR -1 374 1 296 234 94 142 chr6 117227701 117228116 -72051438 + L1MCc LINE L1 1008 1402 -5021 509 249 18 41 chr6 117228117 117228286 -72051268 + L1ME2 LINE L1 17 181 -6245 460 243 109 23 chr6 117228347 117228725 -72050829 + L1ME2 LINE L1 5060 5551 -875 180 216 0 0 chr6 117228743 117228794 -72050760 + (TA)n Simple_repeat Simple_repeat 2 52 0 2122 249 112 20 chr6 117228795 117228863 -72050691 + L1ME2 LINE L1 5536 5596 -848 2100 126 0 3 chr6 117228863 117229164 -72050390 + AluSp SINE Alu 1 300 -13 2122 249 112 20 chr6 117229164 117229909 -72049645 + L1ME2 LINE L1 5596 6425 -19 319 252 94 31 chr6 117231294 117231421 -72048133 - MER46C DNA MER2_type -1 337 203 1231 142 142 58 chr6 117231442 117231729 -72047825 - AluSx SINE Alu 0 312 13 22 0 0 0 chr6 117232295 117232317 -72047237 + AT_rich Low_complexity Low_complexity 1 22 0 1621 166 48 27 chr6 117232551 117232926 -72046628 + Tigger3(Golem) DNA MER2_type 2 3028 -1 187 103 51 0 chr6 117233547 117233586 -72045968 + (TA)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr6 117233769 117233792 -72045762 + AT_rich Low_complexity Low_complexity 1 23 0 2382 135 89 0 chr6 117233868 117234260 -72045294 - MER57B LTR ERV1 -7 427 1 23 0 0 0 chr6 117234718 117234741 -72044813 + AT_rich Low_complexity Low_complexity 1 23 0 382 294 20 0 chr6 117235289 117235391 -72044163 + MER45A DNA AcHobo 75 178 0 186 43 0 0 chr6 117236344 117236367 -72043187 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 702 228 22 35 chr6 117236634 117236811 -72042743 - MER5A DNA MER1_type -12 166 3 486 235 11 28 chr6 117237775 117237934 -72041620 - L1ME1 LINE L1 -169 5993 5830 2062 122 56 19 chr6 117239013 117239373 -72040181 - THE1C LTR MaLR 0 375 3 29 28 0 0 chr6 117240047 117240083 -72039471 + AT_rich Low_complexity Low_complexity 1 36 0 330 289 9 44 chr6 117240236 117240350 -72039204 + L2 LINE L2 3200 3309 -4 205 328 172 15 chr6 117240396 117240600 -72038954 - L2 LINE L2 -1054 2260 2025 261 86 52 0 chr6 117240600 117240658 -72038896 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 680 181 16 0 chr6 117241472 117241599 -72037955 - FLAM_C SINE Alu -12 131 3 210 275 0 0 chr6 117243021 117243112 -72036442 + (TA)n Simple_repeat Simple_repeat 2 92 0 2846 71 0 0 chr6 117243456 117243823 -72035731 - L1PA5 LINE L1 -3 6151 5785 612 125 10 0 chr6 117243965 117244061 -72035493 - AluSg/x SINE Alu -5 307 211 26 88 0 0 chr6 117244094 117244162 -72035392 + AT_rich Low_complexity Low_complexity 1 68 0 2600 177 17 6 chr6 117244175 117244655 -72034899 + MER66B LTR ERV1 2 486 0 2222 186 25 29 chr6 117244802 117245318 -72034236 + L1MA7 LINE L1 5778 6291 0 303 272 88 15 chr6 117245369 117245505 -72034049 - L1ME3A LINE L1 -12 6158 6013 207 0 0 0 chr6 117245604 117245627 -72033927 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 954 43 0 0 chr6 117245629 117245745 -72033809 - AluY SINE Alu -21 290 175 899 93 0 0 chr6 117245759 117245877 -72033677 - AluY SINE Alu -19 292 175 32 43 0 0 chr6 117245937 117245983 -72033571 + AT_rich Low_complexity Low_complexity 1 46 0 1387 313 18 17 chr6 117245993 117246590 -72032964 - L1ME3A LINE L1 -294 5876 5279 2106 137 0 0 chr6 117246643 117246950 -72032604 - AluSg SINE Alu -1 309 3 1478 252 125 16 chr6 117248228 117249337 -72030217 - L1ME1 LINE L1 -50 6116 4771 207 296 56 0 chr6 117249508 117249579 -72029975 + MIR SINE MIR 117 191 -71 2063 62 0 0 chr6 117249616 117249890 -72029664 - L1P LINE L1 -4778 1368 1095 389 31 0 62 chr6 117249890 117249954 -72029600 + L1PA2 LINE L1 6096 6155 0 21 36 0 0 chr6 117250628 117250656 -72028898 + AT_rich Low_complexity Low_complexity 1 28 0 200 35 35 0 chr6 117251031 117251060 -72028494 + (TC)n Simple_repeat Simple_repeat 1 30 0 195 42 0 0 chr6 117251802 117251826 -72027728 + (A)n Simple_repeat Simple_repeat 1 24 0 706 296 74 21 chr6 117251941 117252519 -72027035 + L1ME LINE L1 3730 4335 -1811 352 118 0 0 chr6 117252546 117252597 -72026957 - Tigger7 DNA MER2_type -2079 408 358 23 33 0 0 chr6 117252727 117252757 -72026797 + AT_rich Low_complexity Low_complexity 1 30 0 305 364 32 29 chr6 117252812 117253120 -72026434 + L1ME LINE L1 4643 4951 -1195 647 242 83 11 chr6 117253398 117253672 -72025882 + L1ME LINE L1 5255 5563 -599 483 261 95 30 chr6 117253834 117254231 -72025323 + L1MC4 LINE L1 6247 6565 -1243 258 32 0 0 chr6 117254232 117254263 -72025291 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 492 18 0 0 chr6 117254258 117254315 -72025239 + (TA)n Simple_repeat Simple_repeat 1 57 0 3342 196 57 10 chr6 117254316 117254519 -72025035 - MER44D DNA MER2_type -1884 603 411 2006 133 44 39 chr6 117254519 117254881 -72024673 + THE1B LTR MaLR 1 364 0 3342 196 57 10 chr6 117254881 117255365 -72024189 - MER44D DNA MER2_type -2076 411 12 969 270 25 58 chr6 117255442 117255978 -72023576 + MER39 LTR ERV1 9 687 -20 509 246 68 21 chr6 117255998 117256189 -72023365 + L1MC4a LINE L1 6846 7045 -763 2018 133 3 0 chr6 117256352 117256645 -72022909 - AluSx SINE Alu -16 296 3 813 98 35 7 chr6 117256680 117256823 -72022731 - L1MA4 LINE L1 -6 6294 6148 1966 251 69 25 chr6 117257159 117257319 -72022235 + L1MC4 LINE L1 7129 7281 -761 987 137 0 0 chr6 117257319 117257480 -72022074 + (TA)n Simple_repeat Simple_repeat 1 161 0 1966 251 69 25 chr6 117257480 117258028 -72021526 + L1MC4 LINE L1 7281 7868 -174 296 370 15 7 chr6 117258532 117258667 -72020887 - MIR SINE MIR -107 155 20 427 186 168 0 chr6 117258677 117258790 -72020764 - L1MA7 LINE L1 -51 6240 6109 273 264 11 23 chr6 117258857 117258944 -72020610 + MLT1H LTR MaLR 158 243 -306 243 61 0 0 chr6 117258948 117258981 -72020573 + (CA)n Simple_repeat Simple_repeat 2 34 0 2690 20 0 0 chr6 117259123 117259422 -72020132 - AluY SINE Alu -12 299 1 278 288 168 5 chr6 117259782 117259973 -72019581 - L1M4 LINE L1 -1849 4297 4076 25 65 0 0 chr6 117260482 117260528 -72019026 + AT_rich Low_complexity Low_complexity 1 46 0 264 210 59 0 chr6 117260654 117260773 -72018781 + (TA)n Simple_repeat Simple_repeat 2 127 0 26 50 0 0 chr6 117260869 117260909 -72018645 + AT_rich Low_complexity Low_complexity 1 40 0 38053 87 5 9 chr6 117261033 117267191 -72012363 + L1PA6 LINE L1 11 6143 -11 1332 198 20 0 chr6 117267203 117267456 -72012098 - MER2 DNA MER2_type -87 258 1 688 217 54 30 chr6 117268268 117268434 -72011120 + AluJo SINE Alu 3 172 -140 1642 265 65 30 chr6 117268548 117268735 -72010819 + MLT1E2 LTR MaLR 1 180 -446 2037 74 42 18 chr6 117268735 117269019 -72010535 + AluSc SINE Alu 1 291 -18 1642 265 65 30 chr6 117269019 117269432 -72010122 + MLT1E2 LTR MaLR 180 622 -4 1513 199 71 6 chr6 117270640 117270962 -72008592 - MER2 DNA MER2_type -1 343 1 1351 197 148 88 chr6 117271199 117271935 -72007619 - LTR1 LTR ERV1 0 785 6 2357 124 0 3 chr6 117273678 117274034 -72005520 - L1PB1 LINE L1 -6 6145 5791 1037 129 12 6 chr6 117274187 117274358 -72005196 + THE1C-int LTR MaLR 1409 1580 0 1878 143 26 37 chr6 117274358 117274737 -72004817 + THE1C LTR MaLR 1 375 0 600 225 99 40 chr6 117274737 117274990 -72004564 + L1M4 LINE L1 3643 3910 -2236 * 946 260 48 6 chr6 117274987 117275302 -72004252 + L1MB8 LINE L1 5851 6178 0 21 36 0 0 chr6 117275392 117275420 -72004134 + AT_rich Low_complexity Low_complexity 1 28 0 1200 186 0 25 chr6 117275490 117275726 -72003828 + AluJo SINE Alu 64 293 -19 198 0 0 0 chr6 117275727 117275749 -72003805 + (GA)n Simple_repeat Simple_repeat 1 22 0 21 71 0 0 chr6 117275826 117275868 -72003686 + AT_rich Low_complexity Low_complexity 1 42 0 2239 70 0 14 chr6 117276009 117276320 -72003234 + AluY SINE Alu 1 307 0 2305 41 55 3 chr6 117277819 117278112 -72001442 - AluY SINE Alu -3 308 1 21 0 0 0 chr6 117278392 117278413 -72001141 + AT_rich Low_complexity Low_complexity 1 21 0 319 319 61 88 chr6 117278883 117279178 -72000376 + HAL1b LINE L1 392 678 -670 249 359 94 17 chr6 117279704 117280055 -71999499 - L2 LINE L2 -575 2739 2362 23 0 0 0 chr6 117280302 117280325 -71999229 + AT_rich Low_complexity Low_complexity 1 23 0 23 101 0 0 chr6 117280450 117280529 -71999025 + AT_rich Low_complexity Low_complexity 1 79 0 444 96 0 0 chr6 117280856 117280929 -71998625 + Alu SINE Alu 239 311 0 25 31 0 0 chr6 117281096 117281128 -71998426 + AT_rich Low_complexity Low_complexity 1 32 0 1539 72 10 0 chr6 117281239 117281448 -71998106 + L1PA7 LINE L1 5940 6150 -4 224 227 53 0 chr6 117281700 117281775 -71997779 + A-rich Low_complexity Low_complexity 2 80 0 31 26 0 0 chr6 117282131 117282169 -71997385 + AT_rich Low_complexity Low_complexity 1 38 0 2384 211 26 17 chr6 117282843 117283417 -71996137 - L1 LINE L1 -1905 4241 3663 * 2551 221 37 33 chr6 117283416 117284371 -71995183 + L1M2 LINE L1 2450 5497 -670 333 283 0 0 chr6 117284359 117284451 -71995103 + L1PA16 LINE L1 6057 6148 -18 * 1567 165 0 7 chr6 117284457 117284729 -71994825 + L1P5 LINE L1 5479 5748 -408 1881 152 42 33 chr6 117284733 117285094 -71994460 + THE1B LTR MaLR 1 364 0 9757 129 14 3 chr6 117285094 117286546 -71993008 + THE1B-int LTR MaLR 1 1467 -113 1703 191 48 28 chr6 117286564 117286921 -71992633 + THE1B LTR MaLR 1 364 0 271 83 0 181 chr6 117286927 117286999 -71992555 + L1PB4 LINE L1 5754 5812 -344 1930 155 48 3 chr6 117287035 117287389 -71992165 + L1PB4 LINE L1 5785 6154 -2 22 35 0 0 chr6 117287959 117287988 -71991566 + AT_rich Low_complexity Low_complexity 1 29 0 521 262 99 0 chr6 117288296 117288437 -71991117 - MIR SINE MIR -55 207 53 387 282 8 16 chr6 117288617 117288741 -71990813 + MIR SINE MIR 71 193 -69 22 0 0 0 chr6 117288783 117288805 -71990749 + AT_rich Low_complexity Low_complexity 1 22 0 2610 258 80 78 chr6 117288863 117290006 -71989548 + L1MC4a LINE L1 6014 7162 -646 447 120 0 0 chr6 117290006 117290081 -71989473 + L1MA4 LINE L1 6222 6296 -4 2610 258 80 78 chr6 117290081 117290469 -71989085 + L1MC4a LINE L1 7162 7548 -260 1096 155 11 11 chr6 117290480 117290667 -71988887 + AluSg/x SINE Alu 109 295 -17 409 192 26 53 chr6 117290683 117290834 -71988720 + L1MC4a LINE L1 7657 7803 -5 246 32 0 0 chr6 117290884 117290915 -71988639 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1918 287 30 17 chr6 117291070 117291792 -71987762 + L1MEc LINE L1 259 990 -5406 1462 237 102 38 chr6 117291840 117291925 -71987629 + L1M4 LINE L1 4496 4574 -1572 2118 108 0 3 chr6 117291925 117292220 -71987334 - AluY SINE Alu -17 294 1 1462 237 102 38 chr6 117292220 117292671 -71986883 + L1M4 LINE L1 4574 5074 -1072 1365 216 121 51 chr6 117292671 117292730 -71986824 - MLT2B1 LTR ERVL 0 520 467 333 0 0 0 chr6 117292730 117292767 -71986787 + (TG)n Simple_repeat Simple_repeat 1 37 0 1365 216 121 51 chr6 117292767 117293193 -71986361 - MLT2B1 LTR ERVL -53 467 1 1462 237 102 38 chr6 117293193 117293232 -71986322 + L1M4 LINE L1 5074 5109 -1037 243 289 84 36 chr6 117394623 117394706 -71884848 + MIR SINE MIR 59 145 -63 2302 99 0 0 chr6 117395732 117396035 -71883519 - AluSg SINE Alu -7 303 1 249 367 10 0 chr6 117396126 117396224 -71883330 - MIR3 SINE MIR -10 198 100 1155 215 54 18 chr6 117396819 117397166 -71882388 + MSTD LTR MaLR 3 394 -2 24 0 0 0 chr6 117397895 117397919 -71881635 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr6 117398260 117398295 -71881259 + AT_rich Low_complexity Low_complexity 1 35 0 369 333 29 17 chr6 117398330 117398504 -71881050 + MIR SINE MIR 28 203 -59 592 179 8 45 chr6 117399469 117399603 -71879951 + L1PB4 LINE L1 6027 6155 -1 25 0 0 0 chr6 117399837 117399862 -71879692 + AT_rich Low_complexity Low_complexity 1 25 0 499 281 121 17 chr6 117400072 117400478 -71879076 - L1M4 LINE L1 -3017 3129 2682 236 226 0 32 chr6 117400658 117400720 -71878834 + GA-rich Low_complexity Low_complexity 3 62 0 2653 232 74 32 chr6 117401652 117402892 -71876662 - L1ME1 LINE L1 -5 6144 4856 26 30 0 0 chr6 117403561 117403594 -71875960 + AT_rich Low_complexity Low_complexity 1 33 0 1918 66 8 0 chr6 117405228 117405484 -71874070 - L1PA13 LINE L1 -1 6162 5905 1099 145 0 0 chr6 117405485 117405664 -71873890 + L1P LINE L1 4795 4973 -1173 384 88 0 0 chr6 117405911 117405968 -71873586 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 205 171 0 0 chr6 117406041 117406076 -71873478 + (TG)n Simple_repeat Simple_repeat 2 36 0 1448 161 53 25 chr6 117406628 117406913 -71872641 - MER7A DNA MER2_type 0 346 56 10583 45 0 0 chr6 117406925 117408226 -71871328 - L1P LINE L1 -1608 4538 3238 7399 29 3 0 chr6 117408226 117409877 -71869677 + L1PA5 LINE L1 4504 6139 -15 246 32 0 0 chr6 117409877 117409908 -71869646 + (TA)n Simple_repeat Simple_repeat 2 32 0 1035 273 84 31 chr6 117411549 117412095 -71867459 - HAL1 LINE L1 -20 2487 1913 21 36 0 0 chr6 117412368 117412396 -71867158 + AT_rich Low_complexity Low_complexity 1 28 0 277 252 8 69 chr6 117413084 117413215 -71866339 - L1ME1 LINE L1 -2228 3901 3779 189 246 0 0 chr6 117413217 117413282 -71866272 + (TA)n Simple_repeat Simple_repeat 1 65 0 411 339 57 40 chr6 117413487 117413785 -71865769 - L1ME1 LINE L1 -5197 922 620 612 304 68 14 chr6 117414714 117414934 -71864620 + MIR SINE MIR 13 244 -18 341 258 45 96 chr6 117415557 117415755 -71863799 - MIR SINE MIR -54 208 21 489 311 44 11 chr6 117416084 117416264 -71863290 + MIR3 SINE MIR 23 208 0 1698 186 54 105 chr6 117416677 117417193 -71862361 + MLT1D LTR MaLR 16 505 0 193 292 0 0 chr6 117417461 117417509 -71862045 + L3b LINE CR1 1534 1581 -2 403 339 8 8 chr6 117418126 117418256 -71861298 - L2 LINE L2 -466 2848 2719 181 281 266 31 chr6 117418578 117418679 -71860875 - L2 LINE L2 -946 2368 2238 325 300 67 65 chr6 117418679 117418914 -71860640 + MIR SINE MIR 2 248 -14 181 360 135 23 chr6 117419479 117419954 -71859600 - L2 LINE L2 -1451 1863 1336 254 339 105 8 chr6 117422154 117422278 -71857276 + L2 LINE L2 2616 2751 -563 393 344 74 52 chr6 117422310 117422717 -71856837 + L2 LINE L2 2856 3271 -1 23 0 0 0 chr6 117422775 117422798 -71856756 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 117422952 117422973 -71856581 + AT_rich Low_complexity Low_complexity 1 21 0 1846 157 7 7 chr6 117423271 117423577 -71855977 + AluSx SINE Alu 1 306 -6 444 19 0 0 chr6 117425600 117425653 -71853901 + (CTG)n Simple_repeat Simple_repeat 1 53 0 477 256 36 29 chr6 117426211 117426348 -71853206 - L2 LINE L2 -1 3271 3134 321 364 23 0 chr6 117426603 117426735 -71852819 + L1MC4a LINE L1 5776 5910 -1898 285 182 0 0 chr6 117426786 117426841 -71852713 + (TA)n Simple_repeat Simple_repeat 2 56 0 793 222 148 8 chr6 117427649 117428006 -71851548 + MLT1D LTR MaLR 1 471 -34 375 235 110 44 chr6 117428039 117428175 -71851379 - MIR3 SINE MIR -31 177 33 238 276 114 9 chr6 117430035 117430140 -71849414 - MLT1J LTR MaLR -87 424 309 325 337 39 6 chr6 117430226 117430404 -71849150 - MLT1J LTR MaLR -327 184 1 23 54 0 0 chr6 117430413 117430450 -71849104 + AT_rich Low_complexity Low_complexity 1 37 0 241 171 14 14 chr6 117430530 117430600 -71848954 + (TA)n Simple_repeat Simple_repeat 2 71 0 22 35 0 0 chr6 117431123 117431152 -71848402 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 117431179 117431200 -71848354 + AT_rich Low_complexity Low_complexity 1 21 0 2512 61 0 6 chr6 117431507 117431819 -71847735 - AluY SINE Alu -1 310 1 2194 75 3 19 chr6 117432545 117432853 -71846701 - AluY SINE Alu -8 303 1 383 78 0 0 chr6 117432853 117432904 -71846650 - AluY SINE Alu -167 134 84 181 167 0 0 chr6 117433771 117433801 -71845753 + MIR SINE MIR 118 147 -61 217 265 44 0 chr6 117436700 117436768 -71842786 - L2 LINE L2 -3 3310 3240 648 291 100 28 chr6 117436776 117437065 -71842489 + L2 LINE L2 1943 2252 -1062 351 0 0 0 chr6 117437436 117437475 -71842079 + (TG)n Simple_repeat Simple_repeat 2 40 0 729 276 151 82 chr6 117437493 117438168 -71841386 + L2 LINE L2 2243 2964 -350 546 224 73 97 chr6 117438324 117438583 -71840971 - L1ME1 LINE L1 -4 6162 5910 27 49 0 0 chr6 117439526 117439567 -71839987 + AT_rich Low_complexity Low_complexity 1 41 0 1745 200 84 28 chr6 117441153 117441248 -71838306 + MLT1C LTR MaLR 3 91 -283 3069 164 18 20 chr6 117441248 117441858 -71837696 + L1MA9 LINE L1 5704 6312 0 1745 200 84 28 chr6 117441858 117442165 -71837389 + MLT1C LTR MaLR 91 338 -36 37 39 0 0 chr6 117442571 117442622 -71836932 + AT_rich Low_complexity Low_complexity 1 51 0 571 248 146 19 chr6 117442657 117442980 -71836574 + L1M4 LINE L1 4455 4818 -1328 206 62 31 0 chr6 117443354 117443386 -71836168 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 194 0 39 0 chr6 117443436 117443462 -71836092 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 183 129 0 0 chr6 117443998 117444029 -71835525 + (T)n Simple_repeat Simple_repeat 1 31 0 333 235 143 0 chr6 117444278 117444376 -71835178 - MLT1J LTR MaLR -1 510 399 180 319 121 51 chr6 117446145 117446302 -71833252 - L2 LINE L2 -3 3310 3143 7775 201 35 17 chr6 117446306 117446419 -71833135 + L1PA16 LINE L1 3155 3264 -2902 1871 138 4 7 chr6 117446419 117446694 -71832860 + AluSg SINE Alu 4 277 -33 7775 201 35 17 chr6 117446694 117447396 -71832158 + L1PA16 LINE L1 3264 3951 -2215 1793 148 148 13 chr6 117447396 117447773 -71831781 - MSTA LTR MaLR 0 428 1 7775 201 35 17 chr6 117447773 117449913 -71829641 + L1PA16 LINE L1 3951 6157 -9 773 264 7 102 chr6 117449983 117450396 -71829158 - MLT1A2 LTR MaLR 0 374 1 1349 333 128 29 chr6 117450418 117451577 -71827977 - L2 LINE L2 -194 3078 1801 26 64 0 0 chr6 117452034 117452081 -71827473 + AT_rich Low_complexity Low_complexity 1 47 0 184 369 126 0 chr6 117455118 117455332 -71824222 + L2 LINE L2 2191 2431 -883 311 308 33 11 chr6 117455846 117455937 -71823617 + L2 LINE L2 3199 3291 -22 1277 106 5 0 chr6 117456118 117456306 -71823248 + L1PB1 LINE L1 5963 6151 0 23 33 0 0 chr6 117456385 117456415 -71823139 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr6 117456672 117456701 -71822853 + AT_rich Low_complexity Low_complexity 1 29 0 694 341 92 25 chr6 117457422 117457815 -71821739 - L3b LINE CR1 -54 1529 1111 630 252 148 22 chr6 117458597 117458827 -71820727 + MIR SINE MIR 4 262 0 2014 133 52 33 chr6 117459743 117460111 -71819443 - THE1C LTR MaLR 0 375 1 251 323 88 31 chr6 117460284 117460544 -71819010 + MER102b DNA MER1_type 53 327 -14 8782 89 8 6 chr6 117462242 117464255 -71815299 + L1PA7 LINE L1 4127 6152 -2 22 56 0 0 chr6 117464383 117464419 -71815135 + AT_rich Low_complexity Low_complexity 1 36 0 1432 189 62 11 chr6 117464425 117464540 -71815014 + AluJb SINE Alu 1 109 -203 564 15 0 0 chr6 117464540 117464605 -71814949 + (CA)n Simple_repeat Simple_repeat 2 66 0 1432 189 62 11 chr6 117464605 117464764 -71814790 + AluJb SINE Alu 109 289 -23 1637 113 0 0 chr6 117465232 117465462 -71814092 + AluSg/x SINE Alu 83 312 0 23 0 0 0 chr6 117465592 117465615 -71813939 + AT_rich Low_complexity Low_complexity 1 23 0 899 282 63 7 chr6 117465655 117465956 -71813598 - LTR16B LTR ERVL -136 328 11 23 68 0 0 chr6 117466118 117466162 -71813392 + AT_rich Low_complexity Low_complexity 1 44 0 2567 231 54 26 chr6 117466209 117467050 -71812504 + L1ME2 LINE L1 4545 5406 -760 3502 212 55 0 chr6 117467050 117467796 -71811758 - LTR48 LTR ERV1 0 787 1 2567 231 54 26 chr6 117467796 117467950 -71811604 + L1ME2 LINE L1 5406 5554 -612 * 3745 43 0 0 chr6 117467949 117468409 -71811145 - L1P LINE L1 -2219 3927 3468 7536 33 0 0 chr6 117468409 117469503 -71810051 + L1PA3 LINE L1 5062 6155 0 1843 267 50 7 chr6 117469512 117470097 -71809457 + L1ME2 LINE L1 5546 6155 -9 187 341 89 22 chr6 117470380 117470515 -71809039 - MIR SINE MIR 0 262 119 23 0 0 0 chr6 117470597 117470620 -71808934 + AT_rich Low_complexity Low_complexity 1 23 0 459 246 106 0 chr6 117470687 117470829 -71808725 - MIR SINE MIR -32 230 74 255 380 25 33 chr6 117471886 117472007 -71807547 - L2 LINE L2 -22 3291 3172 1298 284 119 46 chr6 117472391 117473447 -71806107 + L2 LINE L2 2190 3313 0 25 0 0 0 chr6 117474640 117474665 -71804889 + AT_rich Low_complexity Low_complexity 1 25 0 227 196 36 36 chr6 117475657 117475713 -71803841 + MIR SINE MIR 61 116 -146 1212 95 0 18 chr6 117475905 117475925 -71803629 - MER107 DNA MER1_type -32 165 146 491 0 0 17 chr6 117475925 117475985 -71803569 + (TTGTG)n Simple_repeat Simple_repeat 4 62 0 1212 95 0 18 chr6 117475985 117476132 -71803422 - MER107 DNA MER1_type -51 146 1 193 358 0 0 chr6 117476245 117476312 -71803242 - MIR SINE MIR -10 252 186 1233 234 66 77 chr6 117476405 117476845 -71802709 + MLT2B1 LTR ERVL 6 440 -80 279 95 86 0 chr6 117476855 117476960 -71802594 + (TA)n Simple_repeat Simple_repeat 1 114 0 295 130 0 0 chr6 117476977 117477023 -71802531 + MLT2B1 LTR ERVL 419 464 0 867 224 42 123 chr6 117477059 117477483 -71802071 + MLT1B LTR MaLR 1 390 0 226 198 175 16 chr6 117478275 117478401 -71801153 - L1ME4a LINE L1 -40 6081 5936 219 69 0 0 chr6 117478402 117478431 -71801123 + (CA)n Simple_repeat Simple_repeat 2 30 0 180 135 0 0 chr6 117478821 117478858 -71800696 + (GA)n Simple_repeat Simple_repeat 2 38 0 24 53 0 0 chr6 117479137 117479175 -71800379 + AT_rich Low_complexity Low_complexity 1 38 0 9177 34 1 0 chr6 117480003 117481139 -71798415 + L1P LINE L1 2695 3831 -2315 365 272 1 0 chr6 117481241 117481365 -71798189 - L1 LINE L1 -1359 4787 4663 * 2124 181 9 23 chr6 117481362 117481805 -71797749 - L1 LINE L1 -912 5234 4798 30 27 0 0 chr6 117482637 117482674 -71796880 + AT_rich Low_complexity Low_complexity 1 37 0 185 173 58 77 chr6 117484957 117485009 -71794545 - MIR SINE MIR -62 200 150 914 189 6 0 chr6 117485335 117485504 -71794050 + L1P LINE L1 4837 5006 -1140 * 2643 181 46 40 chr6 117485499 117486103 -71793451 + L1MA7 LINE L1 5677 6284 -7 33 0 0 0 chr6 117486107 117486140 -71793414 + AT_rich Low_complexity Low_complexity 1 33 0 191 376 11 11 chr6 117486412 117486505 -71793049 + MER5A DNA MER1_type 2 94 -95 644 143 9 0 chr6 117486713 117486818 -71792736 - MSTA-int LTR MaLR -1545 106 1 1654 182 185 3 chr6 117486818 117487180 -71792374 - MSTA LTR MaLR 0 428 1 1504 151 80 37 chr6 117487180 117487504 -71792050 - L1P LINE L1 -1147 4999 4662 1611 180 7 24 chr6 117487558 117487853 -71791701 - AluJo SINE Alu -18 294 5 342 332 122 24 chr6 117487983 117488229 -71791325 + L1ME4a LINE L1 3975 4240 -1906 349 330 62 10 chr6 117489131 117489340 -71790214 + L1ME4a LINE L1 5255 5474 -2334 1487 232 154 13 chr6 117489562 117490087 -71789467 - MLT1E2 LTR MaLR -15 611 13 296 288 88 29 chr6 117490114 117490354 -71789200 + L1ME4a LINE L1 5707 5960 -161 726 292 153 4 chr6 117490657 117491295 -71788259 + L1ME3 LINE L1 5374 6166 0 1271 82 31 0 chr6 117491799 117491980 -71787574 - L1P LINE L1 -1709 4437 4248 6843 57 14 0 chr6 117491980 117492982 -71786572 + L1PA7 LINE L1 5138 6151 -3 1271 82 31 0 chr6 117492982 117492994 -71786560 - L1P LINE L1 -1898 4248 4238 1050 131 31 31 chr6 117493253 117493475 -71786079 - L1 LINE L1 -769 5377 5156 1074 136 100 0 chr6 117493475 117493694 -71785860 + L1MA8 LINE L1 6047 6288 -3 22 0 0 0 chr6 117493914 117493936 -71785618 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr6 117495049 117495084 -71784470 + AT_rich Low_complexity Low_complexity 1 35 0 10029 29 2 3 chr6 117495440 117497409 -71782145 + L1PA4 LINE L1 4188 6155 0 731 280 28 0 chr6 117497441 117497652 -71781902 - L1M3e LINE L1 -6813 217 1 1200 277 38 7 chr6 117497674 117498096 -71781458 - L1M4 LINE L1 -1817 4329 3895 7567 27 3 0 chr6 117498177 117499647 -71779907 + L1PA3 LINE L1 4678 6155 0 462 299 77 55 chr6 117500476 117500931 -71778623 - L1ME4a LINE L1 -256 5865 5401 25 51 0 0 chr6 117501115 117501154 -71778400 + AT_rich Low_complexity Low_complexity 1 39 0 693 77 0 0 chr6 117501265 117501356 -71778198 + L1P LINE L1 1 91 -6055 249 97 0 0 chr6 117501358 117501389 -71778165 + (A)n Simple_repeat Simple_repeat 1 31 0 1222 122 0 0 chr6 117501495 117501684 -71777870 - L1P LINE L1 -926 5220 5032 * 3699 204 37 11 chr6 117501680 117502594 -71776960 - L1MC1 LINE L1 -387 5946 4973 1586 138 10 43 chr6 117502594 117502899 -71776655 - AluSx SINE Alu -17 295 1 3699 204 37 11 chr6 117502899 117503421 -71776133 - L1MC1 LINE L1 -1360 4973 4466 381 338 38 15 chr6 117504122 117504255 -71775299 - MIR SINE MIR -109 153 18 185 0 40 0 chr6 117504381 117504406 -71775148 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 276 280 128 16 chr6 117504564 117504689 -71774865 + MIR SINE MIR 79 217 -45 2243 101 0 0 chr6 117504875 117505171 -71774383 + AluSg SINE Alu 1 296 -14 21 0 0 0 chr6 117506211 117506232 -71773322 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 117506677 117506701 -71772853 + AT_rich Low_complexity Low_complexity 1 24 0 233 309 48 0 chr6 117506814 117506898 -71772656 + L2 LINE L2 3226 3313 0 1425 277 22 25 chr6 117507276 117507420 -71772134 + L1MEc LINE L1 2000 2143 -4072 2026 149 3 0 chr6 117507420 117507733 -71771821 + AluSx SINE Alu 1 314 0 1425 277 22 25 chr6 117507733 117508070 -71771484 + L1MEc LINE L1 2143 2435 -3780 2462 182 46 8 chr6 117508070 117508570 -71770984 - LTR53 LTR ERVL 0 519 1 1425 277 22 25 chr6 117508570 117508867 -71770687 + L1MEc LINE L1 2435 2731 -3484 12362 153 28 23 chr6 117508877 117511017 -71768537 - Tigger1 DNA MER2_type 0 2418 205 2055 121 4 0 chr6 117511017 117511298 -71768256 + AluSx SINE Alu 3 284 -28 12362 153 28 23 chr6 117511298 117511504 -71768050 - Tigger1 DNA MER2_type -2213 205 2 3815 210 101 12 chr6 117511504 117512533 -71767021 + L1MC3 LINE L1 5921 7041 -744 5886 97 33 0 chr6 117512766 117513908 -71765646 - L1PA13 LINE L1 -4 6159 4995 1720 153 175 24 chr6 117513908 117513931 -71765623 - MSTA LTR MaLR 0 428 410 2471 112 31 8 chr6 117513931 117514287 -71765267 - THE1B LTR MaLR 0 364 1 1720 153 175 24 chr6 117514287 117514635 -71764919 - MSTA LTR MaLR -18 410 1 1246 105 40 10 chr6 117514635 117514835 -71764719 - THE1B-int LTR MaLR 0 1580 1375 457 175 31 21 chr6 117514835 117514932 -71764622 + MER4A LTR ERV1 1 98 -566 1690 115 17 55 chr6 117514932 117515291 -71764263 + MER4A LTR ERV1 261 664 0 3264 168 18 12 chr6 117515292 117515865 -71763689 - THE1B-int LTR MaLR -203 1377 802 1812 178 6 23 chr6 117515863 117516212 -71763342 - THE1B-int LTR MaLR -682 898 556 * 2179 166 72 2 chr6 117516312 117516757 -71762797 + L1MC3 LINE L1 7300 7775 -10 306 323 54 18 chr6 117517654 117517821 -71761733 + L1MEd LINE L1 732 904 -5215 1292 234 99 54 chr6 117517893 117518409 -71761145 + L1ME LINE L1 4901 5483 -681 1555 158 25 108 chr6 117518409 117518807 -71760747 + MLT1A1 LTR MaLR 1 365 0 1292 234 99 54 chr6 117518807 117519160 -71760394 + L1ME LINE L1 5483 5818 -346 507 272 98 52 chr6 117519287 117519574 -71759980 - MLT1J LTR MaLR -8 503 204 9594 176 30 27 chr6 117519582 117519676 -71759878 + L1M1 LINE L1 22 114 -7451 1915 86 21 101 chr6 117519676 117520003 -71759551 + AluSx SINE Alu 3 303 -9 9594 176 30 27 chr6 117520003 117522777 -71756777 + L1M1 LINE L1 114 3273 -4292 446 231 77 21 chr6 117522775 117522918 -71756636 - MST-int LTR MaLR -190 1461 1311 * 342 169 28 0 chr6 117523610 117523681 -71755873 - MLT1D LTR MaLR -2 503 431 * 1112 180 11 0 chr6 117523676 117523859 -71755695 - MLT1D LTR MaLR -316 189 5 2268 135 49 0 chr6 117523913 117524260 -71755294 + THE1B LTR MaLR 1 364 0 189 333 12 24 chr6 117524329 117524413 -71755141 - MIR SINE MIR -158 104 22 42 20 0 0 chr6 117525493 117525542 -71754012 + AT_rich Low_complexity Low_complexity 1 49 0 231 114 0 0 chr6 117526928 117526963 -71752591 + (TG)n Simple_repeat Simple_repeat 2 36 0 946 243 44 53 chr6 117526987 117527399 -71752155 - L1MC4 LINE L1 -171 7871 7464 21 0 0 0 chr6 117527399 117527420 -71752134 + AT_rich Low_complexity Low_complexity 1 21 0 546 279 35 40 chr6 117527634 117527835 -71751719 + MLT1J LTR MaLR 1 200 -311 7915 160 31 8 chr6 117527848 117530343 -71749211 - L1MA3 LINE L1 0 6305 3748 1864 145 125 33 chr6 117530343 117530735 -71748819 + MSTA LTR MaLR 1 428 0 1364 145 9 0 chr6 117530737 117530951 -71748603 + MSTA-int LTR MaLR 3 218 -1362 357 289 0 0 chr6 117531873 117531963 -71747591 + L1MC4 LINE L1 6614 6703 -1339 278 113 0 0 chr6 117531973 117532026 -71747528 + LTR66 LTR ERVL 394 446 -164 990 251 88 11 chr6 117532055 117532418 -71747136 - L1M4 LINE L1 -1121 5985 5595 * 1229 91 27 50 chr6 117532411 117532631 -71746923 + L1MA3 LINE L1 5804 6018 -287 1936 141 28 19 chr6 117532632 117532951 -71746603 + THE1C LTR MaLR 1 322 -53 1053 77 0 0 chr6 117532973 117533103 -71746451 + AluY SINE Alu 164 293 -18 3928 203 31 11 chr6 117533105 117534159 -71745395 - L1MA9 LINE L1 -195 6117 5045 3321 206 50 18 chr6 117534165 117534322 -71745232 - L1M4 LINE L1 -1553 5553 5403 1689 186 3 19 chr6 117534322 117534633 -71744921 - AluJb SINE Alu -4 308 3 3321 206 50 18 chr6 117534633 117535366 -71744188 - L1M4 LINE L1 -1703 5403 4634 2914 69 60 35 chr6 117535382 117535771 -71743783 + MLT2A1 LTR ERVL 1 404 -40 231 88 0 0 chr6 117535771 117535805 -71743749 + (TA)n Simple_repeat Simple_repeat 2 35 0 2914 69 60 35 chr6 117535805 117535848 -71743706 + MLT2A1 LTR ERVL 404 444 0 29575 78 13 1 chr6 117535848 117539673 -71739881 + HERVL-A1 LTR ERVL 1 3870 -1784 12462 76 12 7 chr6 117539670 117541294 -71738260 + HERVL-A1 LTR ERVL 4023 5654 0 * 1879 110 29 4 chr6 117541294 117541575 -71737979 + MLT2A1 LTR ERVL 1 288 -156 459 0 0 0 chr6 117541575 117541626 -71737928 + (TG)n Simple_repeat Simple_repeat 2 52 0 306 25 0 25 chr6 117541629 117541669 -71737885 + MLT2A1 LTR ERVL 413 451 -2 4595 242 78 11 chr6 117541671 117543364 -71736190 - L1M4 LINE L1 -2466 4640 2827 1343 234 35 63 chr6 117543374 117543862 -71735692 - L1M4 LINE L1 -4977 2053 252 922 218 0 0 chr6 117543908 117544078 -71735476 - MSTC LTR MaLR 0 428 259 514 311 51 42 chr6 117545611 117545923 -71733631 - L1MC4a LINE L1 -1854 5954 5640 280 259 24 29 chr6 117546067 117546237 -71733317 - L1MC4a LINE L1 -1819 4327 4159 * 5852 148 28 17 chr6 117546229 117547864 -71731690 - L1PB2 LINE L1 -4 6147 4499 2510 101 6 3 chr6 117547876 117548224 -71731330 - THE1A LTR MaLR 0 355 7 11762 96 5 1 chr6 117548226 117549795 -71729759 - THE1A-int LTR MaLR -6 1574 1 2609 90 6 8 chr6 117549795 117550151 -71729403 - THE1A LTR MaLR 0 355 1 655 224 25 0 chr6 117550155 117550351 -71729203 - L1PB2 LINE L1 -1665 4481 4281 2358 208 164 8 chr6 117550905 117551496 -71728058 + MER76 LTR ERV 1 683 -5 279 337 61 49 chr6 117551519 117551682 -71727872 + MIR SINE MIR 53 217 -45 23 33 0 0 chr6 117551796 117551826 -71727728 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr6 117551935 117551966 -71727588 + AT_rich Low_complexity Low_complexity 1 31 0 1713 152 0 25 chr6 117552398 117552674 -71726880 - AluSx SINE Alu -18 294 26 728 273 91 88 chr6 117552872 117553213 -71726341 + L2 LINE L2 105 446 -2868 446 218 21 136 chr6 117553284 117553564 -71725990 + L1MC4 LINE L1 7784 8031 -11 3350 43 2 0 chr6 117553587 117554002 -71725552 - L1PA4 LINE L1 -2 6153 5738 1956 130 17 7 chr6 117554530 117554831 -71724723 + AluSx SINE Alu 1 304 -8 194 88 0 29 chr6 117556625 117556659 -71722895 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr6 117556919 117556940 -71722614 + AT_rich Low_complexity Low_complexity 1 21 0 460 277 27 0 chr6 117557470 117557582 -71721972 + L2 LINE L2 3193 3307 -6 185 239 0 22 chr6 117557822 117557868 -71721686 + MIR SINE MIR 73 117 -145 5932 128 72 17 chr6 117557905 117558992 -71720562 - Tigger3b DNA MER2_type -83 1148 2 1383 75 0 0 chr6 117559004 117559178 -71720376 + AluY SINE Alu 131 304 -7 14837 175 34 7 chr6 117559206 117559969 -71719585 + L1M1 LINE L1 19 760 -6805 213 39 0 0 chr6 117559969 117559995 -71719559 + (CATTC)n Simple_repeat Simple_repeat 1 26 0 14837 175 34 7 chr6 117559995 117561846 -71717708 + L1M1 LINE L1 760 2704 -4861 4639 219 16 7 chr6 117561902 117562830 -71716724 + L1M1 LINE L1 113 1049 -6516 * 10720 173 21 14 chr6 117562826 117562902 -71716652 + L1M1 LINE L1 3174 3248 -4317 2260 107 0 0 chr6 117562902 117563200 -71716354 + AluY SINE Alu 1 298 -13 10720 173 21 14 chr6 117563200 117565714 -71713840 + L1M1 LINE L1 3248 5783 -1782 1691 231 96 19 chr6 117566050 117566490 -71713064 + MLT2B2 LTR ERVL 1 481 -34 336 48 0 0 chr6 117566490 117566532 -71713022 + (TG)n Simple_repeat Simple_repeat 2 43 0 1691 231 96 19 chr6 117566532 117566562 -71712992 + MLT2B2 LTR ERVL 481 507 -8 1370 184 103 32 chr6 117566590 117566899 -71712655 + MLT2B1 LTR ERVL 122 547 -7 185 298 105 35 chr6 117568299 117568413 -71711141 - L2 LINE L2 -21 3292 3171 21 82 0 0 chr6 117572403 117572452 -71707102 + AT_rich Low_complexity Low_complexity 1 49 0 25 51 0 0 chr6 117572539 117572578 -71706976 + AT_rich Low_complexity Low_complexity 1 39 0 628 306 57 7 chr6 117573224 117573629 -71705925 + L1ME3 LINE L1 1371 1795 -4601 372 318 73 7 chr6 117574009 117574298 -71705256 + L1ME3 LINE L1 5153 5460 -755 300 321 9 27 chr6 117574374 117574486 -71705068 + MLT2E LTR ERVL 32 141 -487 509 280 98 0 chr6 117574544 117574737 -71704817 + L1ME3 LINE L1 5703 5914 -317 543 311 82 5 chr6 117574943 117575149 -71704405 - MIR SINE MIR -16 246 25 2080 125 0 10 chr6 117575537 117575826 -71703728 + AluSp SINE Alu 9 294 -19 857 277 171 6 chr6 117576237 117576579 -71702975 + L2 LINE L2 2589 2982 -331 1848 154 10 26 chr6 117576635 117576946 -71702608 - MER1B DNA MER1_type 0 339 34 358 269 149 34 chr6 117576968 117577176 -71702378 + L2 LINE L2 3082 3313 0 2213 86 10 7 chr6 117577462 117577752 -71701802 + AluY SINE Alu 1 291 -20 1726 197 61 8 chr6 117577918 117578294 -71701260 - MSTD LTR MaLR 0 396 1 2048 138 3 0 chr6 117582004 117582300 -71697254 + AluSx SINE Alu 1 297 -15 229 340 60 70 chr6 117582326 117582541 -71697013 + L2 LINE L2 308 520 -2794 979 276 28 6 chr6 117582701 117583020 -71696534 + L1PB3 LINE L1 3 328 -6535 1577 222 88 100 chr6 117583045 117583788 -71695766 + LTR1B LTR ERV1 1 734 -92 303 215 7 167 chr6 117583876 117584020 -71695534 + LTR28 LTR ERV1 900 1020 0 5771 245 24 22 chr6 117584038 117586516 -71693038 + L1PB3 LINE L1 368 1905 -4958 1281 20 0 0 chr6 117586905 117587053 -71692501 - L1PA5 LINE L1 -6 6148 6001 6124 34 6 0 chr6 117587053 117587978 -71691576 + L1PA5 LINE L1 5057 5987 -167 1229 187 21 0 chr6 117587978 117588261 -71691293 + L1PB3 LINE L1 1902 2190 -4673 644 260 0 0 chr6 117588258 117588412 -71691142 - L1 LINE L1 -3558 2588 2435 * 12084 229 34 16 chr6 117588428 117588763 -71690791 + L1PB3 LINE L1 2184 2512 -4350 2281 106 0 0 chr6 117588763 117589066 -71690488 + AluY SINE Alu 1 303 -8 12084 229 34 16 chr6 117589066 117592505 -71687049 + L1PB3 LINE L1 2512 6080 -782 2375 213 56 40 chr6 117592512 117593081 -71686473 + L1PA15 LINE L1 1162 1739 -5048 * 2542 223 42 9 chr6 117593070 117593742 -71685812 + L1PA15 LINE L1 2740 3433 -3364 7239 204 30 5 chr6 117593756 117596183 -71683371 + L1PA15 LINE L1 4331 6800 -16 5118 134 10 1 chr6 117596186 117596977 -71682577 + L1PB3 LINE L1 6064 6861 -9 208 346 65 9 chr6 117596985 117597092 -71682462 + L2 LINE L2 674 786 -2528 746 232 46 10 chr6 117597480 117597674 -71681880 - MER21B LTR ERV1 -54 809 609 2025 142 30 38 chr6 117597678 117598045 -71681509 + THE1B LTR MaLR 1 364 0 11326 100 14 1 chr6 117598045 117599606 -71679948 + THE1B-int LTR MaLR 1 1580 0 1760 139 70 49 chr6 117599606 117599951 -71679603 + THE1B LTR MaLR 1 352 -12 557 205 66 36 chr6 117599957 117600123 -71679431 - MER21B LTR ERV1 -251 612 442 660 162 0 0 chr6 117600123 117600234 -71679320 - L1PA10 LINE L1 -1559 4587 4477 6017 95 32 2 chr6 117600234 117601764 -71677790 + L1PA10 LINE L1 4601 6150 -18 912 268 53 53 chr6 117601769 117602124 -71677430 - MER21B LTR ERV1 -409 454 100 593 277 97 21 chr6 117602370 117602753 -71676801 - L1MEd LINE L1 -4912 1207 796 21 0 0 0 chr6 117602965 117602986 -71676568 + AT_rich Low_complexity Low_complexity 1 21 0 907 230 34 81 chr6 117603140 117603583 -71675971 + MLT1A1 LTR MaLR 5 372 -2 189 0 0 0 chr6 117603789 117603810 -71675744 + (TG)n Simple_repeat Simple_repeat 2 22 0 2276 85 0 0 chr6 117603874 117604167 -71675387 + AluY SINE Alu 1 293 -18 31 68 0 0 chr6 117604284 117604343 -71675211 + AT_rich Low_complexity Low_complexity 1 59 0 710 285 77 75 chr6 117605009 117605805 -71673749 + L1MC4 LINE L1 7097 7893 -149 395 73 176 0 chr6 117605898 117605966 -71673588 + MADE1 DNA Mariner 1 80 0 587 331 105 40 chr6 117605969 117606549 -71673005 - MLT2F LTR ERVL 0 663 46 210 275 126 66 chr6 117607128 117607295 -71672259 + MER5B DNA MER1_type 2 178 0 2604 221 8 0 chr6 117607564 117608058 -71671496 - MLT2B1 LTR ERVL -8 512 15 1267 177 9 102 chr6 117608275 117608597 -71670957 + AluJo SINE Alu 1 292 -20 264 238 0 12 chr6 117608843 117608923 -71670631 + A-rich Low_complexity Low_complexity 1 79 0 2430 227 35 6 chr6 117609141 117609687 -71669867 + MER68 LTR ERV1 1 562 0 569 313 75 23 chr6 117609706 117609989 -71669565 - L1MC4a LINE L1 -1879 5929 5662 339 44 0 0 chr6 117609989 117610034 -71669520 + (CA)n Simple_repeat Simple_repeat 2 46 0 569 313 75 23 chr6 117610034 117610374 -71669180 - L1MC4a LINE L1 -2146 5662 5254 250 327 27 0 chr6 117611123 117611233 -71668321 + CT-rich Low_complexity Low_complexity 4 116 0 289 350 93 11 chr6 117611295 117611478 -71668076 - MIR SINE MIR -62 200 3 280 305 60 43 chr6 117612257 117612415 -71667139 - MIR SINE MIR -81 127 4 25 0 0 0 chr6 117613009 117613034 -71666520 + AT_rich Low_complexity Low_complexity 1 25 0 2123 119 0 20 chr6 117613579 117613882 -71665672 - AluSq SINE Alu -14 299 3 228 35 0 0 chr6 117614838 117614867 -71664687 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5687 131 43 0 chr6 117614912 117615896 -71663658 - L1PA16 LINE L1 -9 6157 5160 2361 58 0 0 chr6 117616475 117616770 -71662784 + L1PA6 LINE L1 5858 6152 -2 351 300 55 0 chr6 117617220 117617330 -71662224 - Charlie8 DNA MER1_type -2264 153 38 2954 251 46 13 chr6 117618436 117619303 -71660251 - L1ME1 LINE L1 -5 6230 5335 189 107 0 0 chr6 117619533 117619561 -71659993 + (TA)n Simple_repeat Simple_repeat 2 29 0 940 314 47 42 chr6 117619630 117620425 -71659129 - L1ME1 LINE L1 -4543 1853 1055 424 291 162 9 chr6 117620909 117621119 -71658435 - MIR SINE MIR -8 254 13 1613 256 20 9 chr6 117621182 117621627 -71657927 - L1MD3 LINE L1 -39 7956 7507 281 330 136 26 chr6 117621628 117621819 -71657735 - L1MC/D LINE L1 -1984 5824 5613 201 238 0 0 chr6 117622072 117622114 -71657440 + L2 LINE L2 3231 3272 0 1270 187 26 26 chr6 117622885 117623181 -71656373 + AluJo SINE Alu 42 312 0 24 32 0 0 chr6 117623232 117623263 -71656291 + AT_rich Low_complexity Low_complexity 1 31 0 362 21 21 0 chr6 117623378 117623425 -71656129 + (TTA)n Simple_repeat Simple_repeat 2 49 0 186 328 125 62 chr6 117625227 117625355 -71654199 - L2 LINE L2 -21 3251 3116 2692 99 3 0 chr6 117625865 117626228 -71653326 + THE1B LTR MaLR 1 364 0 1597 218 6 16 chr6 117627322 117627634 -71651920 + AluJb SINE Alu 1 309 -3 2147 192 76 27 chr6 117628062 117628551 -71651003 + MLT2B1 LTR ERVL 7 519 -1 372 304 112 0 chr6 117629077 117629202 -71650352 - L2 LINE L2 -1 3271 3133 798 174 78 73 chr6 117629402 117629525 -71650029 - MER20 DNA MER1_type 0 219 93 438 79 0 0 chr6 117629525 117629588 -71649966 + (CA)n Simple_repeat Simple_repeat 2 64 0 798 174 78 73 chr6 117629588 117629682 -71649872 - MER20 DNA MER1_type -126 93 1 238 216 0 0 chr6 117630002 117630053 -71649501 + A-rich Low_complexity Low_complexity 1 51 0 217 97 0 0 chr6 117630083 117630114 -71649440 + L2 LINE L2 3281 3311 -2 344 316 26 0 chr6 117630290 117630407 -71649147 + MARNA DNA Mariner 437 556 -30 32 26 0 0 chr6 117631495 117631534 -71648020 + AT_rich Low_complexity Low_complexity 1 39 0 2161 103 0 0 chr6 117631876 117632196 -71647358 + AluSc SINE Alu 1 320 0 2475 271 86 11 chr6 117634166 117635063 -71644491 + L2 LINE L2 1560 2523 -791 246 259 137 37 chr6 117635094 117635364 -71644190 + L1M4 LINE L1 3159 3455 -2691 1307 257 125 85 chr6 117635456 117636412 -71643142 + L1M4 LINE L1 4105 5112 -1034 1162 182 81 71 chr6 117636412 117636571 -71642983 - AluJo SINE Alu -3 299 134 2267 86 0 20 chr6 117636571 117636875 -71642679 - AluY SINE Alu -13 298 1 1162 182 81 71 chr6 117636875 117637011 -71642543 - AluJo SINE Alu -168 134 1 1307 257 125 85 chr6 117637011 117637159 -71642395 + L1M4 LINE L1 5112 5253 -893 1496 248 137 17 chr6 117637160 117637643 -71641911 - MLT1E2 LTR MaLR -2 624 84 600 201 35 56 chr6 117637704 117637848 -71641706 - MLT1D LTR MaLR -383 122 1 199 219 92 109 chr6 117637911 117638030 -71641524 + L2 LINE L2 3109 3225 -88 2488 227 33 4 chr6 117638301 117638843 -71640711 + MER68 LTR ERV1 5 562 0 1938 157 0 0 chr6 117639149 117639454 -71640100 + AluY SINE Alu 1 305 -6 281 316 86 63 chr6 117639509 117639682 -71639872 - MER102a DNA MER1_type -1104 313 130 877 179 25 0 chr6 117639682 117639844 -71639710 + L1PA16 LINE L1 5992 6157 -9 281 316 86 63 chr6 117639844 117639939 -71639615 - MER102a DNA MER1_type -1287 130 39 19418 161 20 8 chr6 117639946 117644635 -71634919 + L1PA5 LINE L1 1408 6152 -2 5072 122 21 63 chr6 117644635 117646354 -71633200 + L1PA15 LINE L1 4480 6162 -3 224 176 15 0 chr6 117647449 117647517 -71632037 + (TA)n Simple_repeat Simple_repeat 1 69 0 1820 199 25 15 chr6 117647914 117648306 -71631248 + MSTD LTR MaLR 1 396 0 6109 231 100 27 chr6 117648308 117649919 -71629635 + MSTD-int LTR MaLR 2 1729 -6 1541 160 178 6 chr6 117649926 117650264 -71629290 + MSTD LTR MaLR 1 396 0 194 0 39 0 chr6 117650913 117650939 -71628615 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 22 0 0 0 chr6 117651194 117651216 -71628338 + AT_rich Low_complexity Low_complexity 1 22 0 1952 142 81 9 chr6 117651705 117652051 -71627503 - THE1C LTR MaLR 0 375 5 961 188 40 1 chr6 117653665 117653861 -71625693 - L1M2 LINE L1 -435 5733 5521 479 31 47 0 chr6 117653865 117653929 -71625625 + L1MB1 LINE L1 6101 6167 -1 591 236 155 0 chr6 117656766 117656927 -71622627 + MER5A DNA MER1_type 4 189 0 462 108 0 0 chr6 117658126 117658209 -71621345 + (CATA)n Simple_repeat Simple_repeat 2 84 0 282 284 56 43 chr6 117658566 117658728 -71620826 - MARNA DNA Mariner -249 337 174 234 348 0 0 chr6 117658911 117658980 -71620574 + L2 LINE L2 3203 3271 -1 276 30 0 0 chr6 117660044 117660077 -71619477 + (TA)n Simple_repeat Simple_repeat 1 33 0 304 308 158 27 chr6 117661082 117661228 -71618326 + L2 LINE L2 2526 2690 -624 382 226 22 29 chr6 117661270 117661407 -71618147 - Charlie2a DNA MER1_type -184 2678 2543 1036 137 73 116 chr6 117661467 117661796 -71617758 + MER33 DNA MER1_type 10 324 0 1512 246 130 27 chr6 117661798 117662714 -71616840 - Charlie2a DNA MER1_type -381 2481 1472 227 380 0 0 chr6 117662840 117662932 -71616622 - Charlie2a DNA MER1_type -2182 600 509 * 565 279 83 25 chr6 117662929 117663169 -71616385 - Charlie2a DNA MER1_type -2545 317 64 854 303 102 16 chr6 117663229 117663848 -71615706 + L2 LINE L2 2628 3308 -5 22 0 0 0 chr6 117665378 117665400 -71614154 + AT_rich Low_complexity Low_complexity 1 22 0 24 19 8 0 chr6 117665446 117665520 -71614034 + AT_rich Low_complexity Low_complexity 1 31 0 813 21 0 0 chr6 117667450 117667547 -71612007 - L1PA4 LINE L1 -2 6153 6057 2039 261 71 43 chr6 117668720 117670036 -71609518 - L1ME LINE L1 -3163 2917 1614 491 163 178 8 chr6 117670066 117670195 -71609359 + L1MB1 LINE L1 6017 6167 -1 1725 278 64 26 chr6 117670223 117671314 -71608240 - L1ME LINE L1 -4529 1551 425 5540 132 25 23 chr6 117671315 117672254 -71607300 - Tigger1 DNA MER2_type 0 2418 1475 2208 87 40 0 chr6 117672254 117672553 -71607001 - AluY SINE Alu 0 311 1 5540 132 25 23 chr6 117672553 117672569 -71606985 - Tigger1 DNA MER2_type -943 1475 1461 1288 102 16 0 chr6 117672884 117673070 -71606484 - AluSp SINE Alu 0 313 125 6035 89 33 9 chr6 117673267 117674961 -71604593 + L1PA11 LINE L1 4453 6174 0 8704 132 39 21 chr6 117675140 117676592 -71602962 - Tigger1 DNA MER2_type -939 1479 1 341 295 36 9 chr6 117676630 117676742 -71602812 - L1ME LINE L1 -5701 369 255 341 261 38 76 chr6 117676820 117677031 -71602523 - L1ME LINE L1 -5862 208 6 1169 305 126 9 chr6 117677054 117677613 -71601941 + L2 LINE L2 2465 3074 -239 272 286 245 14 chr6 117677592 117677739 -71601815 - MIR SINE MIR -24 238 58 * 2380 79 0 7 chr6 117677904 117678207 -71601347 - AluY SINE Alu -10 301 1 945 85 8 8 chr6 117678579 117678709 -71600845 + AluY SINE Alu 118 247 -64 1377 219 29 46 chr6 117679291 117679638 -71599916 - MER58B DNA MER1_type 0 341 1 2085 169 35 5 chr6 117680060 117680487 -71599067 + L1MA4 LINE L1 5855 6294 -6 2201 128 58 0 chr6 117680512 117680909 -71598645 + L1MA5A LINE L1 5878 6297 0 303 269 118 0 chr6 117681948 117682067 -71597487 - MIR SINE MIR 0 262 130 318 338 74 14 chr6 117682068 117682216 -71597338 - MIR3 SINE MIR -14 194 38 322 228 33 33 chr6 117682330 117682422 -71597132 - L2 LINE L2 -10 3303 3212 435 333 107 52 chr6 117683020 117683422 -71596132 - L2 LINE L2 -86 3227 2804 24 0 0 0 chr6 117685298 117685322 -71594232 + AT_rich Low_complexity Low_complexity 1 24 0 349 96 0 0 chr6 117686823 117686875 -71592679 + AluY SINE Alu 246 297 -3 836 209 27 73 chr6 117688257 117688477 -71591077 + MIR SINE MIR 32 241 -21 1725 133 139 0 chr6 117688664 117688980 -71590574 - MER46B DNA MER2_type 0 236 2 1799 194 91 8 chr6 117688981 117689378 -71590176 - MLT1C LTR MaLR -32 435 6 733 299 108 12 chr6 117690371 117690712 -71588842 - L3 LINE CR1 -163 1414 1041 1700 159 197 18 chr6 117691034 117691430 -71588124 + MLT1C LTR MaLR 1 467 0 1069 235 140 52 chr6 117691493 117691647 -71587907 - MLT1H LTR MaLR -3 546 407 2809 10 0 10 chr6 117691647 117691960 -71587594 - AluYb8 SINE Alu -8 310 1 1069 235 140 52 chr6 117691960 117692268 -71587286 - MLT1H LTR MaLR -142 407 43 307 27 0 0 chr6 117692540 117692577 -71586977 - L1P1 LINE L1 -357 5798 5762 515 16 0 0 chr6 117692577 117692638 -71586916 + L1PA6 LINE L1 6092 6154 0 869 222 64 15 chr6 117692713 117692916 -71586638 + MER20 DNA MER1_type 7 219 0 211 298 107 0 chr6 117693075 117693159 -71586395 - L2 LINE L2 -46 3226 3134 2283 147 48 5 chr6 117693173 117693567 -71585987 - LTR57 LTR ERVL 0 411 1 212 343 80 44 chr6 117693582 117693719 -71585835 + L2 LINE L2 3076 3217 -55 1791 164 4 4 chr6 117694441 117694721 -71584833 + AluSx SINE Alu 3 282 -30 661 292 127 55 chr6 117695121 117695539 -71584015 + MLT1J2 LTR MaLR 3 450 0 379 331 39 0 chr6 117695632 117695759 -71583795 - L2 LINE L2 0 3313 3182 207 342 18 18 chr6 117695920 117696034 -71583520 - L2 LINE L2 -3168 146 33 35 24 0 0 chr6 117697333 117697375 -71582179 + AT_rich Low_complexity Low_complexity 1 42 0 231 250 206 0 chr6 117697392 117697484 -71582070 - MIR SINE MIR -64 144 34 393 321 176 10 chr6 117697624 117697817 -71581737 - MIR SINE MIR -25 237 13 740 303 110 28 chr6 117697990 117698416 -71581138 - L2 LINE L2 -1 3312 2852 571 302 62 42 chr6 117698449 117698757 -71580797 - L2 LINE L2 -546 2768 2455 697 218 6 19 chr6 117699160 117699316 -71580238 - MARNA DNA Mariner -50 536 383 444 200 0 80 chr6 117700820 117700920 -71578634 - MER2 DNA MER2_type -250 95 4 281 293 68 15 chr6 117702358 117702491 -71577063 - LTR16B LTR ERVL -27 437 298 328 328 91 26 chr6 117702588 117702896 -71576658 - HERV16 LTR ERVL -4359 637 310 379 287 0 25 chr6 117703048 117703170 -71576384 + LTR16C LTR ERVL 373 491 0 456 209 73 0 chr6 117703890 117704000 -71575554 + LTR16C LTR ERVL 372 489 -2 933 61 76 23 chr6 117704293 117704425 -71575129 - MER85 DNA T2_type 0 139 1 1452 158 68 28 chr6 117704701 117705024 -71574530 + L1MA7 LINE L1 5956 6291 0 2245 86 0 0 chr6 117706547 117706859 -71572695 - AluSc SINE Alu 0 312 1 181 385 0 90 chr6 117707252 117707418 -71572136 + L2 LINE L2 2934 3084 -188 24 32 0 0 chr6 117709427 117709458 -71570096 + AT_rich Low_complexity Low_complexity 1 31 0 6055 142 90 5 chr6 117710008 117711142 -71568412 - Tigger3b DNA MER2_type 0 1231 2 687 221 8 0 chr6 117711256 117711383 -71568171 + MER58B DNA MER1_type 214 341 0 444 298 161 0 chr6 117712953 117713121 -71566433 + MIR SINE MIR 9 203 -59 1118 255 64 71 chr6 117713847 117714286 -71565268 - LTR33A LTR ERVL -33 490 55 421 56 0 56 chr6 117714446 117714517 -71565037 + L1PA6 LINE L1 6088 6154 0 187 333 171 29 chr6 117714631 117714736 -71564818 + L2 LINE L2 3152 3271 -1 2161 78 0 0 chr6 117715551 117715819 -71563735 - AluY SINE Alu -4 307 40 784 201 6 41 chr6 117716674 117716843 -71562711 - FRAM SINE Alu -2 164 2 21 0 0 0 chr6 117717165 117717186 -71562368 + AT_rich Low_complexity Low_complexity 1 21 0 2259 99 0 0 chr6 117717209 117717501 -71562053 + AluSc SINE Alu 1 292 -17 2093 130 13 0 chr6 117717891 117718198 -71561356 + AluSx SINE Alu 2 312 0 2077 148 14 0 chr6 117720997 117721341 -71558213 + L1PA13 LINE L1 5815 6163 0 328 272 26 38 chr6 117721485 117721629 -71557925 - MIR SINE MIR -71 137 2 2795 7 0 3 chr6 117722090 117722398 -71557156 + AluYa5 SINE Alu 1 307 -4 341 363 133 4 chr6 117723466 117723706 -71555848 - L3b LINE CR1 -157 1426 1156 22 35 0 0 chr6 117724024 117724053 -71555501 + AT_rich Low_complexity Low_complexity 1 29 0 1685 255 28 30 chr6 117724139 117724844 -71554710 + L2 LINE L2 2473 3182 -131 2418 195 69 109 chr6 117724850 117725485 -71554069 - MLT1E2 LTR MaLR -6 620 9 508 256 8 8 chr6 117725520 117725645 -71553909 + L2 LINE L2 3189 3313 0 369 306 8 8 chr6 117725741 117725875 -71553679 - MER94 DNA DNA 0 134 1 228 35 0 0 chr6 117727586 117727615 -71551939 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 805 188 33 11 chr6 117727623 117727663 -71551891 - L1MB3 LINE L1 -12 6171 6133 658 58 0 0 chr6 117727663 117727749 -71551805 - L1PA8 LINE L1 -6 6166 6081 805 188 33 11 chr6 117727749 117727889 -71551665 - L1MB3 LINE L1 -50 6133 5987 26 0 0 0 chr6 117727895 117727921 -71551633 + AT_rich Low_complexity Low_complexity 1 26 0 929 187 36 71 chr6 117728299 117728524 -71551030 + MER20 DNA MER1_type 3 219 0 2145 108 0 0 chr6 117728874 117729152 -71550402 + AluSc SINE Alu 1 278 -31 454 136 0 0 chr6 117729089 117729155 -71550399 + AluSc SINE Alu 216 281 -28 231 36 0 0 chr6 117729168 117729196 -71550358 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 297 155 0 0 chr6 117732150 117732208 -71547346 + (CA)n Simple_repeat Simple_repeat 1 58 0 25 83 0 0 chr6 117734060 117734120 -71545434 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr6 117734570 117734593 -71544961 + AT_rich Low_complexity Low_complexity 1 23 0 471 301 69 10 chr6 117734827 117735030 -71544524 + MIR SINE MIR 15 229 -33 245 143 0 32 chr6 117735064 117735127 -71544427 + (TCC)n Simple_repeat Simple_repeat 3 63 0 271 286 29 0 chr6 117735457 117735527 -71544027 + L2 LINE L2 3231 3302 -11 353 232 30 71 chr6 117735627 117735726 -71543828 - L2 LINE L2 -1 3271 3177 257 138 121 0 chr6 117735726 117735784 -71543770 + MIR SINE MIR 184 248 -14 273 194 81 0 chr6 117735810 117735872 -71543682 + MIR SINE MIR 184 250 -12 201 74 0 0 chr6 117736297 117736324 -71543230 + (A)n Simple_repeat Simple_repeat 1 27 0 217 279 44 0 chr6 117736693 117736761 -71542793 - MIR SINE MIR -3 259 189 492 298 60 0 chr6 117737307 117737458 -71542096 + MIR SINE MIR 90 249 -13 382 231 26 26 chr6 117737672 117737789 -71541765 + MIR SINE MIR 146 262 0 301 235 20 20 chr6 117738841 117738939 -71540615 + (CAGAGA)n Simple_repeat Simple_repeat 6 103 0 1293 221 76 110 chr6 117738941 117739349 -71540205 - MLT2B1 LTR ERVL -20 394 1 2202 123 3 0 chr6 117739781 117740089 -71539465 + AluSx SINE Alu 1 309 -3 3063 137 6 12 chr6 117740090 117740609 -71538945 + L1M2 LINE L1 5278 5793 -498 30 0 0 0 chr6 117740629 117740659 -71538895 + AT_rich Low_complexity Low_complexity 1 30 0 306 191 0 16 chr6 117740662 117740725 -71538829 + L1M2 LINE L1 5783 5844 -468 1611 211 67 77 chr6 117740735 117741304 -71538250 - L1MDa LINE L1 -5088 1452 890 1862 174 57 140 chr6 117741319 117742068 -71537486 + LTR8A LTR ERV1 34 720 -7 2547 269 54 20 chr6 117742089 117742858 -71536696 - L1MDa LINE L1 -5758 782 16 1154 276 40 5 chr6 117742860 117743265 -71536289 + L1ME2 LINE L1 4681 5099 -1047 2140 130 14 8 chr6 117743266 117743514 -71536040 - L1P4 LINE L1 -551 5615 5363 9210 98 11 3 chr6 117743514 117744668 -71534886 + HSMAR1 DNA Mariner 1 1167 -120 2419 94 0 0 chr6 117744668 117744967 -71534587 + AluSg SINE Alu 1 299 -11 9210 98 11 3 chr6 117744967 117745089 -71534465 + HSMAR1 DNA Mariner 1167 1287 0 2140 130 14 8 chr6 117745089 117745193 -71534361 - L1P4 LINE L1 -803 5363 5261 2192 147 6 3 chr6 117745193 117745540 -71534014 + L1PA16 LINE L1 5809 6157 -9 2039 251 26 17 chr6 117745572 117746349 -71533205 + L1ME2 LINE L1 5122 5897 -267 180 0 0 0 chr6 117746835 117746855 -71532699 + (A)n Simple_repeat Simple_repeat 1 20 0 347 382 61 12 chr6 117746860 117747106 -71532448 + MLT1L LTR MaLR 358 615 0 343 280 17 17 chr6 117747426 117747544 -71532010 - MLT2E LTR ERVL -475 153 36 22 88 0 0 chr6 117747857 117747914 -71531640 + AT_rich Low_complexity Low_complexity 1 57 0 313 296 7 82 chr6 117748095 117748230 -71531324 + L2 LINE L2 3189 3313 0 231 382 0 0 chr6 117748895 117749005 -71530549 - MER117 DNA MER1_type -27 170 61 558 222 0 0 chr6 117749091 117749258 -71530296 + (TA)n Simple_repeat Simple_repeat 1 167 0 351 341 69 0 chr6 117749497 117749670 -71529884 - L2 LINE L2 -981 2333 2149 454 241 246 11 chr6 117749765 117749952 -71529602 + MLT1K LTR MaLR 353 583 -5 300 55 455 0 chr6 117750141 117750196 -71529358 + MADE1 DNA Mariner 1 80 0 223 211 211 40 chr6 117751874 117751950 -71527604 + L2 LINE L2 3168 3256 -16 435 291 81 7 chr6 117752358 117752506 -71527048 - MIR3 SINE MIR -46 162 4 1642 223 91 106 chr6 117753244 117754187 -71525367 + LTR1B LTR ERV1 1 1016 -4 222 277 15 0 chr6 117754189 117754254 -71525300 + MIR SINE MIR 197 262 0 219 36 0 0 chr6 117757919 117757947 -71521607 + (TC)n Simple_repeat Simple_repeat 1 28 0 619 35 23 0 chr6 117757948 117758034 -71521520 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 2310 153 15 0 chr6 117758231 117758624 -71520930 - MER57A LTR ERV1 -4 399 1 2487 14 61 0 chr6 117758896 117759189 -71520365 + AluYa5 SINE Alu 1 311 0 315 275 58 17 chr6 117760925 117761045 -71518509 + MIR SINE MIR 133 257 -5 604 275 113 18 chr6 117761896 117762125 -71517429 + MIR SINE MIR 2 252 -10 731 284 93 0 chr6 117764293 117764518 -71515036 + MIR SINE MIR 17 262 0 735 146 19 25 chr6 117765799 117765838 -71513716 - L1MB1 LINE L1 -1 6167 6129 2226 98 0 20 chr6 117765838 117766143 -71513411 - AluSq SINE Alu -14 299 1 735 146 19 25 chr6 117766143 117766261 -71513293 - L1MB1 LINE L1 -39 6129 6011 234 0 0 0 chr6 117766279 117766305 -71513249 + (T)n Simple_repeat Simple_repeat 1 26 0 1272 160 103 64 chr6 117766305 117766587 -71512967 + AluJo SINE Alu 1 293 -19 472 258 117 0 chr6 117766688 117766808 -71512746 + MER94 DNA DNA 1 134 0 986 221 77 46 chr6 117767839 117768215 -71511339 + MSTC LTR MaLR 1 428 0 379 236 45 27 chr6 117769616 117769726 -71509828 + MIR SINE MIR 48 159 -103 22 0 0 0 chr6 117769821 117769843 -71509711 + AT_rich Low_complexity Low_complexity 1 22 0 276 329 107 80 chr6 117770273 117771003 -71508551 - L2 LINE L2 -354 2960 2211 213 321 48 0 chr6 117771364 117771448 -71508106 + MIR3 SINE MIR 119 206 -2 394 313 9 0 chr6 117771520 117771632 -71507922 - L2 LINE L2 0 3313 3201 920 232 31 30 chr6 117771658 117772180 -71507374 + L1MA7 LINE L1 3287 3812 -3753 * 43919 41 2 1 chr6 117772177 117778325 -71501229 + L1PA4 LINE L1 1 6152 -3 455 231 0 0 chr6 117778332 117778440 -71501114 + L1MA7 LINE L1 3795 3902 -3663 448 311 98 82 chr6 117778465 117778977 -71500577 + L1M2 LINE L1 10 529 -6320 12608 222 16 16 chr6 117779680 117784775 -71494779 + L1PA16 LINE L1 614 5848 -365 326 186 10 72 chr6 117784821 117784918 -71494636 - L1MC4 LINE L1 -1339 6703 6613 244 76 61 15 chr6 117784922 117784988 -71494566 + (TA)n Simple_repeat Simple_repeat 2 70 0 353 181 0 14 chr6 117784988 117785067 -71494487 - L1M3 LINE L1 -371 5795 5728 285 149 23 11 chr6 117785069 117785156 -71494398 + (TA)n Simple_repeat Simple_repeat 2 89 0 1583 189 15 67 chr6 117785164 117785555 -71493999 + L1PA16 LINE L1 5850 6220 -3 10847 178 24 51 chr6 117785556 117786264 -71493290 + L1MA7 LINE L1 3904 4629 -2936 2347 103 3 0 chr6 117786264 117786574 -71492980 - AluSp SINE Alu -2 311 1 10847 178 24 51 chr6 117786574 117788490 -71491064 + L1MA7 LINE L1 4629 6458 -1107 1634 124 149 6 chr6 117788491 117788806 -71490748 + MER46B DNA MER2_type 1 235 -1 4668 154 36 57 chr6 117788807 117789096 -71490458 + L1MA7 LINE L1 6458 6751 -959 1050 80 40 0 chr6 117789096 117789247 -71490307 + L1MA5A LINE L1 6136 6292 -5 4668 154 36 57 chr6 117789247 117790127 -71489427 + L1MA7 LINE L1 6751 7616 -94 1523 169 20 37 chr6 117790127 117790422 -71489132 + AluJo SINE Alu 1 290 -22 4668 154 36 57 chr6 117790422 117790487 -71489067 + L1MA7 LINE L1 7616 7681 -29 2267 254 134 123 chr6 117790544 117791368 -71488186 - L2 LINE L2 -143 3170 2356 655 224 86 43 chr6 117791368 117791578 -71487976 + MLT1A2 LTR MaLR 145 363 -11 2267 254 134 123 chr6 117791578 117792554 -71487000 - L2 LINE L2 -957 2356 1144 2536 203 15 58 chr6 117792821 117793368 -71486186 + MLT2B3 LTR ERVL 1 523 -31 722 281 90 55 chr6 117794318 117794720 -71484834 + MLT1L LTR MaLR 112 527 -88 22 35 0 0 chr6 117794819 117794848 -71484706 + AT_rich Low_complexity Low_complexity 1 29 0 2250 81 3 14 chr6 117794956 117795251 -71484303 - AluSq SINE Alu -21 292 1 332 372 16 8 chr6 117795263 117795392 -71484162 - MIR3 SINE MIR -54 154 25 196 261 0 0 chr6 117795866 117795912 -71483642 + L2 LINE L2 3267 3312 -1 250 329 13 0 chr6 117796083 117796159 -71483395 + (CA)n Simple_repeat Simple_repeat 2 78 0 1894 60 0 17 chr6 117796161 117796396 -71483158 + AluY SINE Alu 81 311 0 541 296 145 55 chr6 117796546 117797002 -71482552 - HAL1 LINE L1 -2005 502 6 380 307 81 53 chr6 117797016 117798369 -71481185 - L1M4 LINE L1 -2302 3844 2455 21 36 0 0 chr6 117799319 117799347 -71480207 + AT_rich Low_complexity Low_complexity 1 28 0 198 143 0 0 chr6 117799523 117799558 -71479996 + (CA)n Simple_repeat Simple_repeat 1 35 0 241 259 59 47 chr6 117800393 117800478 -71479076 - MIR SINE MIR -113 149 64 256 279 48 19 chr6 117800582 117800686 -71478868 + MIR SINE MIR 83 189 -73 1040 226 48 16 chr6 117800880 117801132 -71478422 - MLT1D LTR MaLR -1 504 245 5901 193 55 21 chr6 117801132 117801900 -71477654 + L1MA9 LINE L1 3938 4678 -1634 1270 231 12 75 chr6 117801900 117802299 -71477255 - MLT1A2 LTR MaLR 0 374 1 5901 193 55 21 chr6 117802299 117803812 -71475742 + L1MA9 LINE L1 4678 6302 -10 1072 197 0 5 chr6 117804138 117804336 -71475218 - MER3 DNA MER1_type -3 206 10 2382 97 0 0 chr6 117804893 117805203 -71474351 + AluSx SINE Alu 1 310 -2 323 310 202 5 chr6 117806180 117806383 -71473171 - MIR SINE MIR -17 245 3 479 270 61 18 chr6 117806406 117806569 -71472985 + MER5A DNA MER1_type 7 176 -13 471 243 54 18 chr6 117806627 117806738 -71472816 + MIR SINE MIR 23 137 -125 400 239 23 100 chr6 117807785 117807915 -71471639 + L2 LINE L2 3190 3309 -4 2263 78 10 19 chr6 117808058 117808365 -71471189 + AluY SINE Alu 1 304 -7 1563 175 156 37 chr6 117808438 117808629 -71470925 - LTR54B LTR ERV1 -11 487 320 2161 121 3 10 chr6 117808629 117808943 -71470611 - AluSx SINE Alu 0 312 1 1563 175 156 37 chr6 117808943 117809186 -71470368 - LTR54B LTR ERV1 -178 320 1 2507 64 0 0 chr6 117809723 117810034 -71469520 + AluY SINE Alu 1 311 0 2860 159 151 2 chr6 117810408 117811023 -71468531 + MER39 LTR ERV1 1 707 0 36 62 0 0 chr6 117812226 117812290 -71467264 + AT_rich Low_complexity Low_complexity 1 64 0 201 257 114 76 chr6 117814365 117814470 -71465084 - MIR SINE MIR -142 120 12 306 0 0 0 chr6 117815344 117815378 -71464176 + (TG)n Simple_repeat Simple_repeat 2 35 0 686 117 0 0 chr6 117816569 117816663 -71462891 - FLAM_C SINE Alu -18 125 32 289 314 192 26 chr6 117816875 117817302 -71462252 - L2 LINE L2 -1069 2245 1748 502 274 81 14 chr6 117817356 117817691 -71461863 - MLT1I LTR MaLR 0 409 1 213 323 123 57 chr6 117817739 117818179 -71461375 - L2 LINE L2 -1668 1646 1178 237 326 62 23 chr6 117819639 117819768 -71459786 - L2 LINE L2 -22 3291 3158 2340 159 5 15 chr6 117819781 117820172 -71459382 + MLT1B LTR MaLR 4 390 0 592 57 65 16 chr6 117820696 117820819 -71458735 + GA-rich Low_complexity Low_complexity 4 132 0 191 243 0 14 chr6 117821613 117821687 -71457867 + GA-rich Low_complexity Low_complexity 1 73 0 1083 124 0 0 chr6 117821698 117821875 -71457679 + (GGAA)n Simple_repeat Simple_repeat 2 178 0 711 179 0 0 chr6 117821884 117822029 -71457525 + GA-rich Low_complexity Low_complexity 4 148 0 542 233 37 31 chr6 117822344 117822507 -71457047 - LTR67 LTR ERVL -8 549 386 225 344 62 0 chr6 117823571 117823667 -71455887 + L2 LINE L2 3117 3218 -54 26 0 0 0 chr6 117824126 117824152 -71455402 + AT_rich Low_complexity Low_complexity 1 26 0 449 193 51 61 chr6 117824164 117824361 -71455193 + L1MC5 LINE L1 7578 7772 -189 444 287 61 2 chr6 117824391 117824555 -71454999 - MIR SINE MIR -63 145 18 569 264 79 52 chr6 117824571 117824880 -71454674 - MLT1J LTR MaLR -148 315 27 607 242 11 45 chr6 117825361 117825539 -71454015 - MER58C DNA MER1_type 0 215 44 288 0 0 0 chr6 117825554 117825586 -71453968 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 1173 199 28 121 chr6 117826569 117826967 -71452587 + MLT1A1 LTR MaLR 5 365 0 2501 59 0 3 chr6 117827470 117827773 -71451781 + AluY SINE Alu 1 302 -9 252 390 37 30 chr6 117827856 117828156 -71451398 - L2 LINE L2 -868 2446 2145 1081 183 46 28 chr6 117828173 117828458 -71451096 + L1ME1 LINE L1 5761 6050 -116 235 147 0 0 chr6 117828461 117828495 -71451059 + U2 snRNA snRNA 1 34 -154 554 231 8 1 chr6 117828495 117828630 -71450924 + L1ME1 LINE L1 6041 6334 0 2625 130 2 15 chr6 117828699 117828980 -71450574 + MER57A LTR ERV1 1 277 -126 2494 106 28 8 chr6 117828980 117829337 -71450217 + THE1B LTR MaLR 1 364 0 2625 130 2 15 chr6 117829337 117829463 -71450091 + MER57A LTR ERV1 277 403 0 2228 117 0 0 chr6 117829517 117829815 -71449739 + AluSx SINE Alu 1 298 -14 337 274 128 8 chr6 117830706 117830823 -71448731 + L2 LINE L2 3182 3312 -1 325 315 13 27 chr6 117831996 117832145 -71447409 - MIR SINE MIR -55 207 61 1107 191 28 55 chr6 117833197 117833522 -71446032 + LTR56 LTR ERV1 20 335 -110 2665 95 38 28 chr6 117833522 117834193 -71445361 - L1PA13 LINE L1 -510 5658 4992 3246 83 34 6 chr6 117834193 117834663 -71444891 + L1PA13 LINE L1 5679 6161 -2 286 254 51 29 chr6 117834681 117834819 -71444735 + LTR56 LTR ERV1 292 445 0 613 222 87 14 chr6 117835093 117835300 -71444254 - L1ME3 LINE L1 0 6162 5941 2240 95 27 0 chr6 117835383 117835677 -71443877 - AluSp SINE Alu -11 302 1 25 31 0 0 chr6 117835728 117835760 -71443794 + AT_rich Low_complexity Low_complexity 1 32 0 227 31 31 0 chr6 117836198 117836230 -71443324 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 207 0 0 0 chr6 117836429 117836452 -71443102 + (GA)n Simple_repeat Simple_repeat 2 24 0 25 0 0 0 chr6 117836981 117837006 -71442548 + AT_rich Low_complexity Low_complexity 1 25 0 1762 142 57 3 chr6 117837524 117837806 -71441748 + AluSx SINE Alu 12 308 -4 255 265 48 12 chr6 117838010 117838093 -71441461 + MIR SINE MIR 105 190 -72 186 43 0 0 chr6 117838649 117838672 -71440882 + (CAT)n Simple_repeat Simple_repeat 3 25 0 580 308 33 38 chr6 117839255 117839495 -71440059 + MIR SINE MIR 6 244 -18 296 234 0 0 chr6 117839682 117839746 -71439808 + MER5A DNA MER1_type 9 72 -117 1938 117 10 30 chr6 117839746 117840045 -71439509 + AluSc SINE Alu 11 303 -6 260 27 27 0 chr6 117840045 117840082 -71439472 + (GA)n Simple_repeat Simple_repeat 1 38 0 192 77 0 0 chr6 117840079 117840105 -71439449 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 * 310 257 193 9 chr6 117840106 117840215 -71439339 + MER5A DNA MER1_type 61 189 0 449 311 49 27 chr6 117841082 117841265 -71438289 + MIR SINE MIR 25 211 -51 2256 50 0 0 chr6 117841633 117841912 -71437642 + L1PA7 LINE L1 5873 6151 -3 2483 67 0 0 chr6 117841959 117842259 -71437295 + AluY SINE Alu 1 300 -11 351 0 0 0 chr6 117842505 117842544 -71437010 + (CA)n Simple_repeat Simple_repeat 2 40 0 1292 212 29 19 chr6 117842548 117842925 -71436629 + L1ME1 LINE L1 4918 5298 -848 434 179 48 0 chr6 117842949 117843052 -71436502 + L1ME1 LINE L1 5496 5608 -558 576 279 34 42 chr6 117843101 117843338 -71436216 + L1ME1 LINE L1 5911 6145 -21 270 145 188 0 chr6 117843654 117843723 -71435831 + MLT2C1 LTR ERVL 1 82 -315 5341 115 225 76 chr6 117843744 117845220 -71434334 + pTR5 LTR ERV1 743 2438 0 1703 119 110 12 chr6 117845226 117845726 -71433828 - MER51A LTR ERV1 -23 611 1 769 260 68 7 chr6 117845726 117846007 -71433547 + MLT2C1 LTR ERVL 76 373 -24 333 318 35 29 chr6 117846082 117846397 -71433157 + L1M4 LINE L1 4557 4873 -1273 26 0 0 0 chr6 117846888 117846914 -71432640 + AT_rich Low_complexity Low_complexity 1 26 0 229 299 26 0 chr6 117847421 117847498 -71432056 + L2 LINE L2 3234 3312 -1 438 20 0 0 chr6 117849030 117849081 -71430473 + (TA)n Simple_repeat Simple_repeat 1 51 0 42 36 0 0 chr6 117849127 117849183 -71430371 + AT_rich Low_complexity Low_complexity 1 56 0 33951 29 0 2 chr6 117849990 117855052 -71424502 + L1PA2 LINE L1 1097 6148 -7 186 43 0 0 chr6 117855059 117855082 -71424472 + (TAA)n Simple_repeat Simple_repeat 3 25 0 300 70 0 0 chr6 117855082 117855125 -71424429 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 294 361 108 0 chr6 117855387 117855545 -71424009 + MIR3 SINE MIR 16 190 -18 2186 64 4 0 chr6 117860062 117860329 -71419225 - AluY SINE Alu -14 297 30 23 54 0 0 chr6 117860436 117860473 -71419081 + AT_rich Low_complexity Low_complexity 1 37 0 2164 109 0 3 chr6 117861366 117861672 -71417882 - AluSg SINE Alu 0 305 1 2827 10 0 0 chr6 117861786 117862096 -71417458 + AluYb8 SINE Alu 1 310 -8 558 123 12 0 chr6 117862099 117862180 -71417374 + AluJ/FLAM SINE Alu 1 82 -230 2816 13 0 0 chr6 117862331 117862640 -71416914 + AluYb8 SINE Alu 8 316 -2 1878 145 13 13 chr6 117862647 117862950 -71416604 + AluJb SINE Alu 1 303 -9 189 94 0 0 chr6 117862999 117863031 -71416523 + (A)n Simple_repeat Simple_repeat 1 32 0 1949 229 33 35 chr6 117863641 117864157 -71415397 - LTR40a LTR ERVL -1 518 4 518 265 19 25 chr6 117864166 117864328 -71415226 + MIR SINE MIR 89 249 -13 763 229 50 10 chr6 117865611 117865812 -71413742 + MER3 DNA MER1_type 1 209 0 374 346 46 11 chr6 117865857 117866045 -71413509 - MIR SINE MIR -67 141 3 228 358 106 32 chr6 117866301 117866424 -71413130 + L2 LINE L2 3121 3252 -20 602 296 6 12 chr6 117867250 117867422 -71412132 - MER5B DNA MER1_type 0 178 8 3564 146 7 11 chr6 117867852 117868460 -71411094 - MER6A DNA MER2_type 0 605 1 810 299 49 80 chr6 117868522 117868835 -71410719 + L2 LINE L2 2758 3046 -267 1875 159 0 3 chr6 117868835 117869131 -71410423 + AluJo SINE Alu 9 303 -9 810 299 49 80 chr6 117869131 117869391 -71410163 + L2 LINE L2 3046 3313 0 225 197 0 115 chr6 117869570 117869631 -71409923 - L2 LINE L2 0 3272 3219 228 86 0 0 chr6 117871921 117871956 -71407598 + (CA)n Simple_repeat Simple_repeat 1 35 0 272 309 34 39 chr6 117872611 117872789 -71406765 + L3b LINE CR1 1186 1362 -221 192 242 0 30 chr6 117872945 117873014 -71406540 - MIR3 SINE MIR -43 165 99 1237 213 63 98 chr6 117873034 117873548 -71406006 - MLT1F1 LTR MaLR -46 521 1 236 348 11 0 chr6 117873614 117873706 -71405848 + L3b LINE CR1 1370 1462 -121 1862 141 0 70 chr6 117874407 117874734 -71404820 - AluJo SINE Alu -8 304 1 508 287 110 57 chr6 117874927 117875593 -71403961 + L2 LINE L2 989 3313 0 292 251 54 25 chr6 117876441 117876528 -71403026 - MIR SINE MIR -63 145 103 1118 216 165 6 chr6 117876528 117876843 -71402711 - MLT1A1 LTR MaLR 0 365 1 292 251 54 25 chr6 117876843 117876867 -71402687 - MIR SINE MIR -105 103 81 743 188 5 97 chr6 117877287 117877473 -71402081 + AluJo SINE Alu 1 169 -143 2614 188 79 55 chr6 117877506 117878500 -71401054 - L1MC4 LINE L1 0 8042 6878 389 373 89 38 chr6 117878525 117879332 -71400222 - L2 LINE L2 -1660 1654 807 420 284 136 17 chr6 117879688 117879864 -71399690 - MIR SINE MIR -15 247 51 2071 135 0 0 chr6 117880244 117880552 -71399002 - AluSx SINE Alu 0 308 1 2424 49 0 33 chr6 117884906 117885210 -71394344 + AluY SINE Alu 1 294 -17 1344 228 87 6 chr6 117885358 117885705 -71393849 + MLT2F LTR ERVL 177 551 -112 320 186 36 14 chr6 117885761 117885901 -71393653 + (TA)n Simple_repeat Simple_repeat 1 143 0 44115 30 21 1 chr6 117887522 117893546 -71386008 + L1PA2 LINE L1 2 6148 -7 186 43 0 0 chr6 117893553 117893576 -71385978 + (TAA)n Simple_repeat Simple_repeat 3 25 0 300 70 0 0 chr6 117893576 117893619 -71385935 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 270 361 108 0 chr6 117893881 117894039 -71385515 + MIR3 SINE MIR 16 190 -18 1224 210 0 19 chr6 117897836 117898093 -71381461 + MIR SINE MIR 6 257 -5 2369 60 0 0 chr6 117898149 117898463 -71381091 - AluY SINE Alu 0 314 1 228 298 66 58 chr6 117898704 117898853 -71380701 + L2 LINE L2 2785 2934 -338 629 297 23 14 chr6 117899129 117899348 -71380206 - LTR16B LTR ERVL -180 284 64 249 347 13 0 chr6 117899349 117899424 -71380130 - MIR SINE MIR -180 82 7 745 106 0 0 chr6 117899694 117899798 -71379756 - L1MB1 LINE L1 -285 5904 5801 1953 165 84 32 chr6 117899798 117900168 -71379386 - MSTC LTR MaLR 0 428 40 239 269 13 13 chr6 117900317 117900395 -71379159 + T-rich Low_complexity Low_complexity 4 81 0 1027 238 33 0 chr6 117901075 117901289 -71378265 + MER58A DNA MER1_type 3 223 -1 470 211 61 106 chr6 117901298 117901478 -71378076 + MER5B DNA MER1_type 1 172 -6 443 241 75 5 chr6 117901479 117901647 -71377907 + MER89 LTR ERV1 1 281 -278 1231 99 0 12 chr6 117901747 117901919 -71377635 - AluY SINE Alu -141 170 1 422 262 43 30 chr6 117902042 117902190 -71377364 + L2 LINE L2 3148 3300 -13 246 62 0 0 chr6 117902190 117902222 -71377332 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 422 262 43 30 chr6 117902222 117902237 -71377317 + L2 LINE L2 3300 3313 0 970 145 40 0 chr6 117903044 117903196 -71376358 - MER7A DNA MER2_type -190 156 1 207 69 0 0 chr6 117903197 117903226 -71376328 + (CA)n Simple_repeat Simple_repeat 2 30 0 949 261 61 22 chr6 117903238 117903795 -71375759 + L1ME3 LINE L1 5165 5870 -292 2139 127 0 0 chr6 117903796 117904103 -71375451 - AluSq SINE Alu -6 307 1 526 244 51 6 chr6 117904629 117904785 -71374769 - MIR SINE MIR 0 262 100 2064 107 34 14 chr6 117905174 117905465 -71374089 + AluSx SINE Alu 5 301 -11 529 223 77 83 chr6 117905675 117905944 -71373610 - MLT1F1 LTR MaLR -285 282 14 478 236 28 137 chr6 117906090 117906412 -71373142 + L2 LINE L2 3027 3313 0 350 152 30 15 chr6 117906826 117906892 -71372662 - MLT1C LTR MaLR -5 462 396 1976 107 7 4 chr6 117906897 117907177 -71372377 - AluSp SINE Alu -27 286 6 262 309 71 78 chr6 117907449 117907731 -71371823 - L3 LINE CR1 -58 1519 1240 306 249 198 30 chr6 117907792 117908190 -71371364 + L2 LINE L2 2729 3191 -122 2090 177 22 39 chr6 117908748 117909035 -71370519 - L1PB4 LINE L1 -4 6152 5873 2096 115 6 34 chr6 117909035 117909356 -71370198 + AluSx SINE Alu 1 312 0 2090 177 22 39 chr6 117909356 117909475 -71370079 - L1PB4 LINE L1 -283 5873 5753 314 278 10 10 chr6 117910753 117910850 -71368704 + MIR SINE MIR 31 127 -135 1382 145 112 0 chr6 117910950 117911192 -71368362 + LTR34 LTR ERV1 431 699 0 2245 136 22 22 chr6 117911248 117911616 -71367938 - THE1C LTR MaLR -6 369 2 2410 87 0 3 chr6 117911769 117912081 -71367473 - AluY SINE Alu 0 311 1 730 300 109 20 chr6 117912259 117912933 -71366621 - HERV16 LTR ERVL -2140 2856 2113 751 205 81 0 chr6 117913030 117913191 -71366363 + MER96 DNA MER1_type 1 174 -1 537 302 31 16 chr6 117913461 117913716 -71365838 - HERV16 LTR ERVL -3828 1168 910 188 339 34 0 chr6 117914633 117914692 -71364862 - L2 LINE L2 -1 3271 3211 362 333 44 13 chr6 117914826 117914985 -71364569 + MLT1K LTR MaLR 258 421 -167 221 239 119 0 chr6 117915256 117915348 -71364206 - MIR SINE MIR -63 145 49 244 381 59 0 chr6 117915422 117915540 -71364014 + L2 LINE L2 3133 3257 -15 1101 145 193 10 chr6 117915862 117916069 -71363485 - AluSg1 SINE Alu -64 245 1 21 0 0 0 chr6 117916094 117916115 -71363439 + AT_rich Low_complexity Low_complexity 1 21 0 1531 216 27 37 chr6 117916725 117916918 -71362636 + MER93b LTR ERV1 1 190 -183 2279 12 0 0 chr6 117916918 117917162 -71362392 - L1PA2 LINE L1 0 6155 5912 1531 216 27 37 chr6 117917162 117917343 -71362211 + MER93b LTR ERV1 190 371 -2 1547 112 0 0 chr6 117917507 117917704 -71361850 - AluSc SINE Alu -112 197 1 808 232 132 6 chr6 117917718 117918039 -71361515 + L1M4 LINE L1 4459 4849 -1297 264 127 113 0 chr6 117918056 117918127 -71361427 - L1M LINE L1 -792 5378 5300 770 234 60 24 chr6 117918172 117918420 -71361134 + L1M4 LINE L1 4876 5132 -1014 720 195 0 0 chr6 117918473 117918591 -71360963 - Tigger3(Golem) DNA MER2_type 0 3029 2912 738 184 165 53 chr6 117918697 117918808 -71360746 - LTR50 LTR ERVL -564 231 134 2411 177 42 19 chr6 117918808 117919282 -71360272 + MER31A LTR ERV1 1 485 0 738 184 165 53 chr6 117919282 117919376 -71360178 - LTR50 LTR ERVL -661 134 3 288 284 78 10 chr6 117919628 117919730 -71359824 - L2 LINE L2 -8 3305 3197 668 184 99 7 chr6 117920675 117920816 -71358738 + L1MA10 LINE L1 6176 6329 -5 2111 184 10 31 chr6 117920869 117921261 -71358293 - MLT1B LTR MaLR -2 388 5 313 259 105 68 chr6 117921823 117921985 -71357569 + MIR3 SINE MIR 20 187 -21 261 0 0 0 chr6 117922618 117922647 -71356907 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 680 119 0 0 chr6 117922654 117922738 -71356816 - FLAM_C SINE Alu -25 118 35 2033 176 11 70 chr6 117922884 117923084 -71356470 + L1MDa LINE L1 16 226 -6314 1326 75 32 11 chr6 117923084 117923270 -71356284 - L1MA1 LINE L1 -14 6288 6099 2033 176 11 70 chr6 117923270 117923540 -71356014 + L1MDa LINE L1 226 458 -6082 351 248 101 16 chr6 117923543 117923672 -71355882 + L1ME1 LINE L1 5847 5986 -180 294 117 13 26 chr6 117923870 117923947 -71355607 + (TA)n Simple_repeat Simple_repeat 2 77 0 216 0 0 0 chr6 117926117 117926141 -71353413 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 242 308 103 100 chr6 117926146 117926467 -71353087 - L2 LINE L2 -12 3260 2939 254 301 39 33 chr6 117926546 117926699 -71352855 - MIR SINE MIR -77 185 32 227 314 38 38 chr6 117927011 117927176 -71352378 + MIR SINE MIR 18 187 -68 2157 135 3 0 chr6 117927216 117927513 -71352041 + AluSx SINE Alu 1 298 -14 482 221 0 0 chr6 117927667 117927762 -71351792 + MLT2E LTR ERVL 234 328 -300 648 239 19 13 chr6 117927815 117927974 -71351580 + MLT2E LTR ERVL 469 628 0 883 251 84 36 chr6 117928005 117928363 -71351191 + LTR33 LTR ERVL 115 489 -32 2025 181 24 26 chr6 117928363 117929001 -71350553 + L1M4 LINE L1 5000 5636 -548 891 242 40 5 chr6 117929101 117929324 -71350230 - L1M4 LINE L1 -1828 4318 4088 790 228 12 0 chr6 117929836 117930003 -71349551 + MER5A DNA MER1_type 21 189 0 407 327 19 12 chr6 117930270 117930432 -71349122 + MIR SINE MIR 30 192 -70 466 371 24 5 chr6 117930502 117930712 -71348842 + MIR SINE MIR 31 244 -18 451 108 108 0 chr6 117930959 117931042 -71348512 + LTR50 LTR ERVL 702 793 -2 323 308 61 15 chr6 117931092 117931253 -71348301 - MIR SINE MIR -54 208 44 381 299 30 37 chr6 117931505 117931669 -71347885 + MIR SINE MIR 26 188 -74 694 143 0 9 chr6 117932352 117932464 -71347090 + FRAM SINE Alu 66 176 0 2449 181 54 20 chr6 117932464 117932621 -71346933 + L1MB7 LINE L1 5664 5814 -370 2144 125 0 7 chr6 117932621 117932924 -71346630 + AluSx SINE Alu 1 301 -11 2449 181 54 20 chr6 117932924 117933270 -71346284 + L1MB7 LINE L1 5814 6184 0 272 171 0 0 chr6 117933270 117933311 -71346243 + LTR33 LTR ERVL 479 519 -2 202 293 47 28 chr6 117933527 117933633 -71345921 - MIR3 SINE MIR -16 192 85 357 296 68 39 chr6 117933817 117934034 -71345520 + MIR SINE MIR 16 241 -21 200 314 10 119 chr6 117934123 117934317 -71345237 - MER5A DNA MER1_type -16 173 1 574 183 0 10 chr6 117935008 117935112 -71344442 + MER49 LTR ERV1 1 103 -820 1834 119 11 4 chr6 117935216 117935476 -71344078 - AluSx SINE Alu -16 296 35 266 299 67 51 chr6 117935569 117935943 -71343611 - L1M4 LINE L1 -791 5355 4976 246 342 152 8 chr6 117936094 117936468 -71343086 - L1M4 LINE L1 -1007 5139 4712 356 286 70 75 chr6 117936470 117937029 -71342525 - L1M4 LINE L1 -1488 4658 4103 1546 191 36 23 chr6 117937125 117937303 -71342251 - AluJb SINE Alu 0 312 127 2071 102 0 27 chr6 117937303 117937598 -71341956 - AluSg SINE Alu -11 299 13 1546 191 36 23 chr6 117937598 117937722 -71341832 - AluJb SINE Alu -185 127 6 2124 313 70 37 chr6 117937939 117939193 -71340361 - ERVL LTR ERVL -366 5398 4103 2507 204 69 2 chr6 117939387 117939907 -71339647 - MER68 LTR ERV1 -7 555 1 629 168 0 25 chr6 117939978 117939994 -71339560 + GA-rich Low_complexity Low_complexity 4 19 -141 2230 82 6 38 chr6 117939994 117940313 -71339241 + AluY SINE Alu 1 309 -2 629 168 0 25 chr6 117940313 117940457 -71339097 + GA-rich Low_complexity Low_complexity 19 160 0 2066 185 88 35 chr6 117940713 117941193 -71338361 - MLT1D LTR MaLR 0 505 1 641 325 32 4 chr6 117942668 117942914 -71336640 + MIR SINE MIR 3 255 -7 373 307 100 7 chr6 117943288 117943438 -71336116 - MIR3 SINE MIR -24 184 21 417 329 67 13 chr6 117943601 117943750 -71335804 + MIR3 SINE MIR 2 158 -50 435 291 35 14 chr6 117944279 117944420 -71335134 + MLT1K LTR MaLR 278 421 -167 491 313 60 15 chr6 117945473 117945738 -71333816 - HAL1 LINE L1 -857 1650 1374 330 301 30 44 chr6 117945771 117945974 -71333580 - L1MEd LINE L1 -4941 1178 979 22 56 0 0 chr6 117946195 117946231 -71333323 + AT_rich Low_complexity Low_complexity 1 36 0 440 270 73 22 chr6 117946986 117947123 -71332431 + MIR SINE MIR 11 154 -108 436 296 43 48 chr6 117947201 117947387 -71332167 - MIR SINE MIR -43 219 35 395 286 61 7 chr6 117947652 117947799 -71331755 + MIR SINE MIR 65 219 -43 260 241 36 12 chr6 117948423 117948506 -71331048 + (TATG)n Simple_repeat Simple_repeat 3 87 0 753 253 85 18 chr6 117948573 117948938 -71330616 - L1ME LINE L1 -595 5567 5182 1415 294 46 34 chr6 117949082 117949673 -71329881 + ERVL LTR ERVL 2708 3305 -2459 607 323 70 7 chr6 117950044 117950344 -71329210 + LTR16A LTR ERVL 120 438 -12 850 85 8 31 chr6 117950405 117950535 -71329019 - THE1B LTR MaLR 0 364 238 1020 202 140 54 chr6 117950660 117951011 -71328543 + MLT1B LTR MaLR 10 390 0 2330 59 0 36 chr6 117952099 117952404 -71327150 - AluY SINE Alu -13 298 5 209 244 49 49 chr6 117952816 117952898 -71326656 + L2 LINE L2 2336 2417 -897 194 243 27 0 chr6 117953114 117953188 -71326366 + (CA)n Simple_repeat Simple_repeat 1 76 0 183 223 223 32 chr6 117953639 117953733 -71325821 + L2 LINE L2 3153 3264 -8 200 228 87 65 chr6 117953821 117953913 -71325641 - MIR SINE MIR -94 114 21 654 245 15 10 chr6 117954935 117955139 -71324415 + L1PA13 LINE L1 5939 6143 -20 706 222 87 14 chr6 117955579 117955786 -71323768 - L1ME3 LINE L1 0 6162 5941 2161 105 27 0 chr6 117955869 117956163 -71323391 - AluSp SINE Alu -11 302 1 25 31 0 0 chr6 117956214 117956246 -71323308 + AT_rich Low_complexity Low_complexity 1 32 0 227 31 31 0 chr6 117956684 117956716 -71322838 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 225 0 0 0 chr6 117956911 117956936 -71322618 + (GA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr6 117957465 117957490 -71322064 + AT_rich Low_complexity Low_complexity 1 25 0 1746 142 57 3 chr6 117958008 117958290 -71321264 + AluSx SINE Alu 12 308 -4 247 265 48 12 chr6 117958494 117958577 -71320977 + MIR SINE MIR 105 190 -72 186 43 0 0 chr6 117959133 117959156 -71320398 + (CAT)n Simple_repeat Simple_repeat 3 25 0 557 308 33 38 chr6 117959739 117959979 -71319575 + MIR SINE MIR 6 244 -18 296 234 0 0 chr6 117960166 117960230 -71319324 + MER5A DNA MER1_type 9 72 -117 1931 117 10 30 chr6 117960230 117960529 -71319025 + AluSc SINE Alu 11 303 -6 260 27 27 0 chr6 117960529 117960566 -71318988 + (GA)n Simple_repeat Simple_repeat 1 38 0 192 77 0 0 chr6 117960563 117960589 -71318965 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 * 303 257 193 9 chr6 117960590 117960699 -71318855 + MER5A DNA MER1_type 61 189 0 433 317 49 27 chr6 117961566 117961749 -71317805 + MIR SINE MIR 25 211 -51 2399 50 0 0 chr6 117962117 117962396 -71317158 + L1PA7 LINE L1 5873 6151 -3 2496 67 0 0 chr6 117962443 117962743 -71316811 + AluY SINE Alu 1 300 -11 351 0 0 0 chr6 117962989 117963028 -71316526 + (CA)n Simple_repeat Simple_repeat 2 40 0 1460 215 53 15 chr6 117963028 117963538 -71316016 + L1ME1 LINE L1 4914 5610 -556 668 285 45 36 chr6 117963535 117963825 -71315729 + L1ME1 LINE L1 5858 6148 -18 * 304 145 188 0 chr6 117964138 117964207 -71315347 + MLT2C1 LTR ERVL 1 82 -315 5931 115 225 76 chr6 117964228 117965704 -71313850 + pTR5 LTR ERV1 743 2438 0 1884 115 112 12 chr6 117965710 117966209 -71313345 - MER51A LTR ERV1 -23 611 1 884 261 67 7 chr6 117966209 117966499 -71313055 + MLT2C1 LTR ERVL 76 647 -16 454 311 35 29 chr6 117966565 117966880 -71312674 + L1M4 LINE L1 4557 4873 -1273 26 0 0 0 chr6 117967371 117967397 -71312157 + AT_rich Low_complexity Low_complexity 1 26 0 213 299 26 0 chr6 117967904 117967981 -71311573 + L2 LINE L2 3234 3312 -1 438 20 0 0 chr6 117969513 117969564 -71309990 + (TA)n Simple_repeat Simple_repeat 2 52 0 35 41 0 0 chr6 117969610 117969659 -71309895 + AT_rich Low_complexity Low_complexity 1 49 0 36560 26 0 2 chr6 117970471 117975539 -71304015 + L1PA2 LINE L1 1097 6155 0 396 274 8 12 chr6 117976713 117976836 -71302718 - MLT1J2 LTR MaLR -226 183 65 2299 102 3 3 chr6 117978150 117978453 -71301101 + AluY SINE Alu 1 303 -8 253 348 133 37 chr6 117982547 117982869 -71296685 + L2 LINE L2 2877 3229 -43 1853 136 75 23 chr6 117984132 117984478 -71295076 + THE1B LTR MaLR 1 364 0 438 236 321 5 chr6 117984818 117985030 -71294524 + MER5C DNA MER1_type 45 323 -1 987 179 92 0 chr6 117985238 117985422 -71294132 + MER58A DNA MER1_type 24 224 0 459 269 31 23 chr6 117985978 117986108 -71293446 - MLT1J2 LTR MaLR -37 413 283 382 168 0 3 chr6 117986167 117986241 -71293313 - MLT1J1 LTR MaLR -302 107 35 471 318 52 32 chr6 117987527 117987779 -71291775 - LTR67 LTR ERVL -8 549 293 350 364 100 0 chr6 117987828 117987968 -71291586 - LTR67 LTR ERVL -266 291 138 561 86 0 12 chr6 117988317 117988398 -71291156 + MADE1 DNA Mariner 1 80 0 273 241 76 38 chr6 117989076 117989155 -71290399 + L2 LINE L2 3180 3261 -11 222 245 0 0 chr6 117991356 117991405 -71288149 - L2 LINE L2 0 3313 3265 357 270 0 22 chr6 117992004 117992093 -71287461 + L2 LINE L2 3227 3313 0 29 0 0 0 chr6 117992961 117992990 -71286564 + AT_rich Low_complexity Low_complexity 1 29 0 2336 82 0 16 chr6 117992992 117993296 -71286258 + AluY SINE Alu 1 299 -12 598 226 154 39 chr6 117993412 117993582 -71285972 - HAL1 LINE L1 -160 2347 2198 2342 157 18 47 chr6 117993582 117994027 -71285527 + MSTB1 LTR MaLR 1 432 0 598 226 154 39 chr6 117994027 117994081 -71285473 - HAL1 LINE L1 -309 2198 2152 2501 142 30 23 chr6 117994081 117994512 -71285042 - Tigger2a DNA MER2_type 0 434 1 598 226 154 39 chr6 117994512 117994592 -71284962 - HAL1 LINE L1 -355 2152 2007 233 304 294 0 chr6 117994806 117994898 -71284656 + L2 LINE L2 3178 3296 -17 394 233 146 71 chr6 117995722 117995962 -71283592 + MER102a DNA MER1_type 73 330 0 318 218 0 0 chr6 117997812 117997867 -71281687 + Charlie5 DNA MER1_type 1 55 -2557 1481 30 0 60 chr6 117997869 117998070 -71281484 - L1PA10 LINE L1 -276 5892 5704 1704 131 39 0 chr6 117998070 117998330 -71281224 + L1PA10 LINE L1 5867 6136 -32 612 123 20 118 chr6 117998331 117998450 -71281104 + Charlie5 DNA MER1_type 2448 2542 -82 1757 102 78 4 chr6 117998450 117998706 -71280848 - AluJb SINE Alu -17 295 21 612 123 20 118 chr6 117998706 117998781 -71280773 + Charlie5 DNA MER1_type 2542 2623 -1 30 59 0 0 chr6 118002043 118002094 -71277460 + AT_rich Low_complexity Low_complexity 1 51 0 527 72 0 0 chr6 118003051 118003120 -71276434 - Alu SINE Alu -244 74 6 801 268 222 47 chr6 118003596 118004349 -71275205 + HAL1 LINE L1 1345 2229 -278 337 153 0 0 chr6 118004354 118004413 -71275141 + MER53 DNA DNA 2 60 -129 26 30 0 0 chr6 118005386 118005419 -71274135 + AT_rich Low_complexity Low_complexity 1 33 0 339 85 0 0 chr6 118007283 118007330 -71272224 + (TC)n Simple_repeat Simple_repeat 1 47 0 920 213 28 14 chr6 118008484 118008700 -71270854 - MER20 DNA MER1_type 0 219 1 191 268 171 0 chr6 118009663 118009745 -71269809 + MIR SINE MIR 59 154 -108 243 322 45 60 chr6 118009954 118010153 -71269401 + L3 LINE CR1 1371 1566 -11 308 301 0 0 chr6 118013316 118013389 -71266165 - L2 LINE L2 -3 3269 3197 392 289 31 50 chr6 118013795 118013954 -71265600 + MIR SINE MIR 76 231 -31 182 306 59 47 chr6 118014169 118014254 -71265300 + L2 LINE L2 2961 3046 -226 466 96 0 0 chr6 118014952 118015025 -71264529 - L1PA5 LINE L1 0 6154 6082 459 36 0 0 chr6 118015025 118015080 -71264474 + L1PA4 LINE L1 6034 6088 -67 330 26 0 0 chr6 118016675 118016714 -71262840 + (TC)n Simple_repeat Simple_repeat 1 39 0 1085 256 74 81 chr6 118016738 118017319 -71262235 + MLT1L LTR MaLR 38 614 -1 521 318 88 13 chr6 118017544 118017783 -71261771 + MIR SINE MIR 1 257 -5 1373 217 102 19 chr6 118018051 118018415 -71261139 - MSTD LTR MaLR 0 396 3 2396 236 30 2 chr6 118018417 118018913 -71260641 - MSTD-int LTR MaLR 0 1735 1226 * 2706 217 27 10 chr6 118018910 118019500 -71260054 - MSTD-int LTR MaLR -1134 601 2 1481 168 37 112 chr6 118019502 118019930 -71259624 - MSTD LTR MaLR 0 396 1 23 0 0 0 chr6 118020392 118020415 -71259139 + AT_rich Low_complexity Low_complexity 1 23 0 290 314 97 16 chr6 118020436 118020560 -71258994 - L2 LINE L2 -6 3266 3133 192 333 174 8 chr6 118020997 118021129 -71258425 + MIR SINE MIR 99 252 -10 303 114 68 0 chr6 118021585 118021629 -71257925 + 5S rRNA rRNA 19 65 -56 199 250 0 0 chr6 118021736 118021784 -71257770 + L2 LINE L2 3025 3072 -200 330 246 98 49 chr6 118021873 118021995 -71257559 - MIR SINE MIR -70 192 65 1330 216 117 60 chr6 118022000 118022487 -71257067 - MLT2B2 LTR ERVL 0 515 1 306 228 0 0 chr6 118022879 118022936 -71256618 - MER117 DNA MER1_type -140 57 1 273 345 69 20 chr6 118023655 118023858 -71255696 - L2 LINE L2 -235 3037 2825 254 286 143 42 chr6 118024191 118024359 -71255195 - L2 LINE L2 -914 2400 2216 574 277 9 95 chr6 118024377 118024608 -71254946 + Charlie8 DNA MER1_type 26 236 -2181 2058 41 0 0 chr6 118024915 118025161 -71254393 + L1PA3 LINE L1 5907 6152 -3 34 55 0 0 chr6 118025273 118025328 -71254226 + AT_rich Low_complexity Low_complexity 1 55 0 25 0 0 0 chr6 118027957 118027982 -71251572 + AT_rich Low_complexity Low_complexity 1 25 0 407 19 19 0 chr6 118028615 118028667 -71250887 + (TA)n Simple_repeat Simple_repeat 2 54 0 337 335 24 24 chr6 118029150 118029314 -71250240 - MIR3 SINE MIR -12 196 33 2540 247 83 36 chr6 118029562 118030441 -71249113 + L1MDa LINE L1 306 1302 -5238 5955 134 21 8 chr6 118030442 118030508 -71249046 + L1MA8 LINE L1 4697 4761 -1530 2149 116 10 10 chr6 118030508 118030809 -71248745 + AluSx SINE Alu 1 301 -11 306 0 0 0 chr6 118030809 118030843 -71248711 + (TA)n Simple_repeat Simple_repeat 2 35 0 5955 134 21 8 chr6 118030843 118032328 -71247226 + L1MA8 LINE L1 4760 6264 -27 943 207 15 45 chr6 118032339 118032605 -71246949 + L1MDa LINE L1 1296 1553 -4987 308 363 65 0 chr6 118032670 118032794 -71246760 + L2 LINE L2 3141 3272 0 910 291 94 38 chr6 118033659 118034105 -71245449 + LTR33 LTR ERVL 47 517 -4 191 55 55 55 chr6 118034233 118034288 -71245266 + (TCTCTG)n Simple_repeat Simple_repeat 6 60 0 4714 167 45 16 chr6 118034556 118035388 -71244166 + MER21B LTR ERV1 1 856 -7 467 252 82 14 chr6 118037051 118037198 -71242356 + MIR SINE MIR 57 213 -49 2356 130 89 10 chr6 118037294 118037687 -71241867 + MSTC LTR MaLR 1 424 -4 741 114 45 8 chr6 118037817 118037949 -71241605 - FRAM SINE Alu 0 176 40 292 272 49 0 chr6 118038018 118038099 -71241455 + MIR3 SINE MIR 86 170 -38 525 243 7 28 chr6 118038378 118038522 -71241032 - MER99 DNA DNA -4 824 684 1548 205 46 9 chr6 118038551 118038581 -71240973 - MER99 DNA DNA -272 556 529 2447 66 0 7 chr6 118038581 118038886 -71240668 - AluSc SINE Alu -6 303 1 1548 205 46 9 chr6 118038886 118039202 -71240352 - MER99 DNA DNA -299 529 197 2342 58 0 45 chr6 118039265 118039577 -71239977 + AluY SINE Alu 1 298 -13 1844 18 22 13 chr6 118039707 118039936 -71239618 + L1PA7 LINE L1 5924 6154 0 290 247 200 0 chr6 118040457 118040542 -71239012 - MER99 DNA DNA -725 103 2 326 273 77 56 chr6 118040579 118040722 -71238832 - MLT1J LTR MaLR -238 273 128 346 336 66 0 chr6 118042670 118042807 -71236747 + MIR3 SINE MIR 30 175 -33 373 188 176 97 chr6 118044513 118044678 -71234876 - L2 LINE L2 -3 3310 3133 30 69 0 0 chr6 118045528 118045586 -71233968 + AT_rich Low_complexity Low_complexity 1 58 0 21 36 0 0 chr6 118045692 118045720 -71233834 + AT_rich Low_complexity Low_complexity 1 28 0 227 296 114 15 chr6 118045992 118046144 -71233410 - MIR SINE MIR -62 146 15 357 226 190 14 chr6 118046932 118047153 -71232401 - L1MC5 LINE L1 -87 7874 7615 507 87 0 189 chr6 118047153 118047248 -71232306 + L1MA8 LINE L1 6183 6250 -41 1611 206 0 0 chr6 118047248 118047530 -71232024 - AluJo SINE Alu -30 282 1 507 87 0 189 chr6 118047530 118047561 -71231993 + L1MA8 LINE L1 6250 6285 -6 569 263 103 0 chr6 118047599 118047793 -71231761 - L1MC5 LINE L1 -412 7549 7336 362 287 34 16 chr6 118048055 118048179 -71231375 - MIR SINE MIR -62 146 62 1358 200 171 6 chr6 118048300 118048640 -71230914 - MSTD LTR MaLR 0 396 1 4854 23 0 0 chr6 118048770 118049383 -71230171 - L1PA4 LINE L1 -335 5820 5208 2913 34 3 0 chr6 118049383 118049733 -71229821 + L1PA4 LINE L1 5800 6152 -3 521 266 104 3 chr6 118050775 118050946 -71228608 + MIR SINE MIR 60 252 -10 25 51 0 0 chr6 118050946 118050985 -71228569 + AT_rich Low_complexity Low_complexity 1 39 0 507 250 61 12 chr6 118051922 118052086 -71227468 + MER63A DNA MER1_type 3 174 -36 389 254 56 24 chr6 118052634 118052760 -71226794 + MIR SINE MIR 23 152 -56 395 264 68 47 chr6 118053889 118054101 -71225453 - LTR33 LTR ERVL 0 521 298 1181 203 60 2 chr6 118054118 118054431 -71225123 - MER33 DNA MER1_type 0 324 1 225 255 20 0 chr6 118054477 118054528 -71225026 - LTR33 LTR ERVL -380 141 90 308 348 76 0 chr6 118055101 118055219 -71224335 + MIR SINE MIR 21 147 -61 400 340 135 0 chr6 118055259 118055400 -71224154 - L2 LINE L2 -2 3270 3111 234 320 13 0 chr6 118055541 118055616 -71223938 + MIR SINE MIR 66 141 -121 22 70 0 0 chr6 118055890 118055933 -71223621 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr6 118055947 118055969 -71223585 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 118056409 118056431 -71223123 + AT_rich Low_complexity Low_complexity 1 22 0 1473 193 44 15 chr6 118056716 118056990 -71222564 + AluJo SINE Alu 1 282 -30 185 0 0 39 chr6 118056993 118057019 -71222535 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 24 0 0 0 chr6 118057099 118057123 -71222431 + AT_rich Low_complexity Low_complexity 1 24 0 352 351 145 33 chr6 118057869 118058262 -71221292 + L2 LINE L2 2821 3257 -15 193 263 26 0 chr6 118059718 118059756 -71219798 - L2 LINE L2 -2922 392 354 751 291 34 17 chr6 118059874 118060169 -71219385 - L1MEc LINE L1 -1958 4171 3872 884 175 7 0 chr6 118060172 118060198 -71219356 - LTR40b LTR ERVL 0 462 438 2880 47 17 0 chr6 118060198 118060560 -71218994 - L1PA7 LINE L1 0 6154 5787 884 175 7 0 chr6 118060560 118060687 -71218867 - LTR40b LTR ERVL -24 438 308 570 266 138 22 chr6 118060691 118061104 -71218450 - L1MEc LINE L1 -2863 3266 2806 211 250 17 0 chr6 118061158 118061218 -71218336 + (TA)n Simple_repeat Simple_repeat 1 61 0 356 261 162 59 chr6 118061303 118061556 -71217998 - L1MEc LINE L1 -3611 2518 2240 2169 110 0 7 chr6 118061627 118061926 -71217628 - AluSc SINE Alu -8 301 5 350 274 68 59 chr6 118061934 118062153 -71217401 - L1MEc LINE L1 -4117 2193 1973 257 305 63 22 chr6 118062474 118062743 -71216811 - L1MEc LINE L1 -4719 1591 1312 281 258 137 58 chr6 118062809 118063173 -71216381 - L1MEc LINE L1 -4916 1203 811 378 243 41 53 chr6 118063511 118063680 -71215874 + L2 LINE L2 3142 3308 -5 198 0 0 0 chr6 118064411 118064433 -71215121 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 1340 223 3 27 chr6 118064501 118064801 -71214753 - AluJb SINE Alu -19 293 1 387 0 0 0 chr6 118065199 118065242 -71214312 + (TG)n Simple_repeat Simple_repeat 2 44 0 182 236 101 56 chr6 118065807 118065896 -71213658 - L2 LINE L2 -4 3268 3176 1388 186 97 4 chr6 118066434 118066692 -71212862 + AluJo SINE Alu 1 282 -30 30 0 0 0 chr6 118066692 118066722 -71212832 + AT_rich Low_complexity Low_complexity 1 30 0 315 331 48 7 chr6 118067427 118067572 -71211982 - ERVL LTR ERVL -693 5071 4921 255 122 44 44 chr6 118067881 118067971 -71211583 + (TA)n Simple_repeat Simple_repeat 2 91 0 198 273 91 126 chr6 118068057 118068200 -71211354 - MIR SINE MIR -109 153 16 424 306 81 17 chr6 118068923 118069158 -71210396 - MIR SINE MIR 0 262 13 268 95 24 0 chr6 118069169 118069211 -71210343 + L2 LINE L2 3271 3313 0 542 308 89 17 chr6 118071892 118072129 -71207425 - MIR SINE MIR -1 261 8 279 203 0 0 chr6 118072653 118072727 -71206827 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 2130 171 121 41 chr6 118072879 118073266 -71206288 - MLT1D LTR MaLR -5 500 69 1778 148 0 56 chr6 118073266 118073569 -71205985 + AluJb SINE Alu 1 286 -26 2130 171 121 41 chr6 118073569 118073643 -71205911 - MLT1D LTR MaLR -436 69 2 2073 229 78 6 chr6 118073769 118074285 -71205269 + L2 LINE L2 2158 2710 -604 987 316 34 19 chr6 118074300 118074712 -71204842 + LTR16A LTR ERVL 25 442 -8 701 257 121 55 chr6 118074723 118075201 -71204353 + L2 LINE L2 2709 3313 0 456 302 70 23 chr6 118075204 118075419 -71204135 - MIR SINE MIR -19 243 19 26 0 0 0 chr6 118076692 118076718 -71202836 + AT_rich Low_complexity Low_complexity 1 26 0 909 254 23 0 chr6 118077517 118077737 -71201817 - MIR SINE MIR -37 225 1 345 47 0 0 chr6 118078667 118078710 -71200844 + (CA)n Simple_repeat Simple_repeat 1 43 0 28 0 0 0 chr6 118079303 118079331 -71200223 + AT_rich Low_complexity Low_complexity 1 28 0 400 307 69 10 chr6 118080235 118080437 -71199117 + MIR SINE MIR 28 241 -21 195 311 34 59 chr6 118081071 118081190 -71198364 - MIR SINE MIR -56 206 91 409 309 32 8 chr6 118082978 118083104 -71196450 + MIR3 SINE MIR 36 164 -44 355 299 89 19 chr6 118083106 118083263 -71196291 + MER117 DNA MER1_type 4 171 -26 841 117 0 0 chr6 118084198 118084326 -71195228 + L1MA9 LINE L1 6180 6307 -5 346 318 48 31 chr6 118084785 118085044 -71194510 + L2 LINE L2 2722 2986 -327 523 259 65 7 chr6 118085073 118085212 -71194342 + L2 LINE L2 3121 3267 -5 1483 181 44 4 chr6 118085704 118086023 -71193531 - MLT2C1 LTR ERVL -8 406 28 267 194 14 42 chr6 118086363 118086435 -71193119 + MLT1I LTR MaLR 307 376 -33 533 264 239 16 chr6 118087199 118087509 -71192045 + LTR50 LTR ERVL 1 379 -416 391 362 76 5 chr6 118087527 118087712 -71191842 + MIR3 SINE MIR 4 201 -7 269 299 111 0 chr6 118087902 118088019 -71191535 + Charlie8 DNA MER1_type 1 130 -2287 239 343 14 48 chr6 118088024 118088170 -71191384 - MIR3 SINE MIR -52 156 16 198 300 0 0 chr6 118088590 118088650 -71190904 + L2 LINE L2 1962 2021 -1293 1761 99 81 0 chr6 118088771 118089055 -71190499 + L1MA2 LINE L1 5982 6288 -16 245 231 22 66 chr6 118089069 118089160 -71190394 - MIR SINE MIR -108 154 68 1836 126 67 62 chr6 118089290 118089328 -71190226 - THE1C LTR MaLR 0 375 339 1967 130 0 67 chr6 118089328 118089643 -71189911 + AluSx SINE Alu 1 294 -18 1836 126 67 62 chr6 118089643 118089977 -71189577 - THE1C LTR MaLR -36 339 1 200 231 19 0 chr6 118090020 118090072 -71189482 + L2 LINE L2 2234 2286 -1028 470 266 215 0 chr6 118090110 118090268 -71189286 + MIR SINE MIR 63 254 -8 195 100 0 0 chr6 118090269 118090299 -71189255 + (TTA)n Simple_repeat Simple_repeat 3 32 0 301 330 42 17 chr6 118090965 118091083 -71188471 - MIR3 SINE MIR -9 199 79 234 263 76 85 chr6 118091701 118091819 -71187735 + L2 LINE L2 3140 3256 -16 210 188 21 0 chr6 118092664 118092712 -71186842 + T-rich Low_complexity Low_complexity 6 54 0 459 52 0 0 chr6 118092712 118092770 -71186784 + (TGG)n Simple_repeat Simple_repeat 1 58 0 790 294 29 33 chr6 118093067 118093373 -71186181 - L2 LINE L2 -4 3309 3005 21 0 0 0 chr6 118093432 118093453 -71186101 + AT_rich Low_complexity Low_complexity 1 21 0 343 175 58 4 chr6 118093837 118093924 -71185630 + MLT1F1 LTR MaLR 5 95 -474 803 245 195 10 chr6 118093965 118094041 -71185513 + MLT1F1 LTR MaLR 210 271 -296 2491 81 31 14 chr6 118094041 118094399 -71185155 - THE1B LTR MaLR 0 364 1 803 245 195 10 chr6 118094399 118094624 -71184930 + MLT1F1 LTR MaLR 271 567 0 2398 125 53 22 chr6 118095272 118095687 -71183867 + MSTC LTR MaLR 1 428 0 213 159 23 0 chr6 118096568 118096612 -71182942 + (TA)n Simple_repeat Simple_repeat 2 46 0 1998 102 32 48 chr6 118097076 118097391 -71182163 - AluSq SINE Alu -3 310 1 1093 140 19 0 chr6 118097926 118098133 -71181421 + L1MD3 LINE L1 7785 7995 0 305 336 55 23 chr6 118100356 118100484 -71179070 - L2 LINE L2 -5 3267 3136 295 286 7 86 chr6 118100672 118100812 -71178742 - MIR SINE MIR -50 212 84 22 35 0 0 chr6 118101134 118101163 -71178391 + AT_rich Low_complexity Low_complexity 1 29 0 2993 50 5 8 chr6 118102863 118103245 -71176309 - L1PA4 LINE L1 0 6155 5775 2126 127 3 0 chr6 118103344 118103636 -71175918 - AluSx SINE Alu -19 293 1 207 296 69 88 chr6 118104603 118104762 -71174792 - L2 LINE L2 -27 3245 3090 785 302 73 4 chr6 118106118 118106350 -71173204 - MIR SINE MIR 0 262 15 469 271 197 18 chr6 118106855 118107139 -71172415 + L1ME4a LINE L1 5787 6121 0 206 289 3 0 chr6 118107413 118107473 -71172081 + MIR SINE MIR 91 152 -56 236 105 26 0 chr6 118107514 118107552 -71172002 + MLT1F LTR MaLR 359 397 -145 252 194 0 16 chr6 118107854 118107916 -71171638 + CT-rich Low_complexity Low_complexity 3 63 0 259 378 25 0 chr6 118108632 118108751 -71170803 + L2 LINE L2 3151 3272 0 2211 132 0 10 chr6 118110319 118110630 -71168924 + AluSc SINE Alu 1 308 -1 228 217 29 43 chr6 118110653 118110722 -71168832 - MER5A DNA MER1_type -25 164 97 24 91 0 0 chr6 118110732 118110798 -71168756 + AT_rich Low_complexity Low_complexity 1 66 0 245 308 131 0 chr6 118111183 118111290 -71168264 + L2 LINE L2 3193 3313 0 2855 86 3 0 chr6 118111653 118112027 -71167527 - THE1C LTR MaLR 0 375 1 33 0 0 0 chr6 118112378 118112411 -71167143 + AT_rich Low_complexity Low_complexity 1 33 0 1541 169 14 55 chr6 118112411 118112701 -71166853 - AluJo SINE Alu -29 283 6 864 182 47 0 chr6 118113030 118113200 -71166354 - MER97c DNA MER1_type? -911 179 2 243 302 8 24 chr6 118113928 118114054 -71165500 - MER103 DNA DNA 0 166 43 1681 167 65 0 chr6 118114656 118114932 -71164622 + AluSx SINE Alu 1 294 -18 495 284 63 130 chr6 118116874 118117289 -71162265 - L2 LINE L2 0 3272 2886 407 254 69 46 chr6 118117419 118117592 -71161962 + MLT1K LTR MaLR 73 249 -339 4011 202 85 4 chr6 118117611 118118531 -71161023 + MER45B DNA AcHobo 3 996 -44 420 239 42 142 chr6 118118602 118118891 -71160663 + MLT1K LTR MaLR 322 581 -7 42 48 0 0 chr6 118119025 118119088 -71160466 + AT_rich Low_complexity Low_complexity 1 63 0 2273 167 52 7 chr6 118119136 118119544 -71160010 + MSTB LTR MaLR 1 426 0 3684 28 0 0 chr6 118120208 118120638 -71158916 - L1PA5 LINE L1 -6 6148 5719 1211 62 0 0 chr6 118120638 118120798 -71158756 + L1PA5 LINE L1 5568 5727 -427 699 231 50 103 chr6 118122780 118123101 -71156453 - MER102a DNA MER1_type -5 325 22 180 299 103 34 chr6 118123231 118123348 -71156206 + L2 LINE L2 1932 2056 -1258 443 210 259 14 chr6 118123441 118123584 -71155970 - MER5B DNA MER1_type 0 178 1 29 0 0 0 chr6 118124735 118124764 -71154790 + AT_rich Low_complexity Low_complexity 1 29 0 1232 140 14 0 chr6 118124771 118124978 -71154576 - MER2 DNA MER2_type -134 211 2 2730 100 11 0 chr6 118125214 118125574 -71153980 + THE1B LTR MaLR 1 364 0 347 242 183 8 chr6 118125846 118125966 -71153588 - MIR SINE MIR -40 222 82 309 82 0 0 chr6 118126828 118126877 -71152677 + (CA)n Simple_repeat Simple_repeat 2 50 0 426 291 82 0 chr6 118127055 118127261 -71152293 + L1MC/D LINE L1 5599 5821 -1987 479 68 0 27 chr6 118127363 118127436 -71152118 + (TAGA)n Simple_repeat Simple_repeat 1 71 0 32 47 0 16 chr6 118127611 118127645 -71151909 + AT_rich Low_complexity Low_complexity 1 35 -28 1683 199 3 14 chr6 118127645 118127936 -71151618 + AluJo SINE Alu 1 288 -24 32 47 0 16 chr6 118127936 118127965 -71151589 + AT_rich Low_complexity Low_complexity 35 63 0 481 298 74 45 chr6 118128272 118128785 -71150769 + HAL1 LINE L1 1155 1682 -825 223 279 0 0 chr6 118128874 118128935 -71150619 + A-rich Low_complexity Low_complexity 1 61 0 367 222 0 79 chr6 118129197 118129323 -71150231 + HAL1b LINE L1 754 869 -479 681 210 0 0 chr6 118129674 118129951 -71149603 + (CATTC)n Satellite Satellite 1 277 0 741 163 0 0 chr6 118129964 118130142 -71149412 + (CATTC)n Satellite Satellite 3 180 0 747 173 0 0 chr6 118130154 118130461 -71149093 + (CATTC)n Satellite Satellite 1 307 0 684 206 0 0 chr6 118130508 118130842 -71148712 + (CATTC)n Satellite Satellite 1 334 0 186 150 0 0 chr6 118130867 118130907 -71148647 + (CATTC)n Satellite Satellite 1 40 0 872 122 6 0 chr6 118130925 118131089 -71148465 + (CATTC)n Satellite Satellite 4 168 0 725 163 3 19 chr6 118131112 118131431 -71148123 + (CATTC)n Satellite Satellite 1 314 0 663 189 3 0 chr6 118131449 118131750 -71147804 + (CATTC)n Satellite Satellite 1 302 0 608 183 0 3 chr6 118131776 118132124 -71147430 + (CATTC)n Satellite Satellite 1 346 0 787 272 81 20 chr6 118132458 118132704 -71146850 - MIR SINE MIR 0 262 2 2012 129 4 0 chr6 118132910 118133220 -71146334 + AluSx SINE Alu 1 311 0 210 233 150 0 chr6 118133452 118133512 -71146042 - L2 LINE L2 -47 3225 3157 748 253 106 26 chr6 118134725 118134990 -71144564 + MLT1L LTR MaLR 330 615 0 234 281 0 0 chr6 118136447 118136511 -71143043 + L1MD3 LINE L1 7854 7917 -78 1408 157 3 35 chr6 118136517 118136775 -71142779 + L1P LINE L1 3488 3746 -2400 1846 160 48 0 chr6 118136775 118137068 -71142486 + AluJb SINE Alu 1 307 -5 1408 157 3 35 chr6 118137068 118137095 -71142459 + L1P LINE L1 3746 3772 -2374 * 4028 214 34 76 chr6 118137088 118138436 -71141118 + L1PA11 LINE L1 737 2139 -5445 2204 83 0 4 chr6 118138436 118138713 -71140841 + AluY SINE Alu 1 276 -35 4028 214 34 76 chr6 118138713 118138733 -71140821 + L1PA11 LINE L1 2139 2158 -5426 372 55 0 0 chr6 118138733 118138788 -71140766 + Alu SINE Alu 247 301 0 4028 214 34 76 chr6 118138788 118139537 -71140017 + L1PA11 LINE L1 2158 3629 -3955 16585 166 28 9 chr6 118139552 118146285 -71133269 + L1PB1 LINE L1 1 6862 -5 13479 151 10 10 chr6 118146301 118148782 -71130772 + L1PA11 LINE L1 3614 6093 -1491 2024 153 39 21 chr6 118148782 118149279 -71130275 + MLT2A2 LTR ERVL 1 412 -41 467 9 116 0 chr6 118149281 118149393 -71130161 + (TA)n Simple_repeat Simple_repeat 2 126 0 386 73 0 0 chr6 118149403 118149458 -71130096 + MLT2A2 LTR ERVL 399 453 0 5983 119 4 11 chr6 118149458 118151005 -71128549 + L1PA11 LINE L1 6089 7612 0 21 0 0 0 chr6 118151083 118151104 -71128450 + AT_rich Low_complexity Low_complexity 1 21 0 1462 208 15 11 chr6 118151417 118151691 -71127863 + AluJb SINE Alu 6 280 -32 204 40 0 0 chr6 118151691 118151716 -71127838 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 29407 115 10 53 chr6 118151730 118158154 -71121400 + L1PA7 LINE L1 12 6154 0 23 0 0 0 chr6 118158155 118158178 -71121376 + AT_rich Low_complexity Low_complexity 1 23 0 1453 197 27 24 chr6 118158190 118158484 -71121070 + AluJo SINE Alu 8 302 -10 256 211 337 0 chr6 118158514 118158609 -71120945 - MIR3 SINE MIR -1 207 81 212 323 192 15 chr6 118159188 118159318 -71120236 - L2 LINE L2 -5 3267 3115 3247 170 27 22 chr6 118159552 118160449 -71119105 + L1MC2 LINE L1 4525 4931 -1215 1988 117 33 0 chr6 118160449 118160762 -71118792 + AluSg SINE Alu 1 322 0 3247 170 27 22 chr6 118160762 118161236 -71118318 + L1MC2 LINE L1 4931 5401 -745 365 149 0 0 chr6 118161279 118161346 -71118208 + LTR22B LTR ERVK 1 67 -425 282 170 0 0 chr6 118161378 118161431 -71118123 - LTR22B LTR ERVK -406 86 34 1591 185 51 29 chr6 118161564 118161975 -71117579 + L1MC2 LINE L1 5917 6336 -8 338 276 166 6 chr6 118162158 118162321 -71117233 + MER5A DNA MER1_type 1 189 0 1222 144 5 0 chr6 118163177 118163365 -71116189 - MER5A DNA MER1_type 0 189 1 208 259 189 45 chr6 118164437 118164585 -71114969 + MIR SINE MIR 19 186 -61 857 276 57 25 chr6 118165926 118166292 -71113262 + MLT1I LTR MaLR 31 408 -1 322 278 60 45 chr6 118166452 118166585 -71112969 + MIR SINE MIR 20 154 -108 21 0 0 0 chr6 118167544 118167565 -71111989 + AT_rich Low_complexity Low_complexity 1 21 0 267 157 0 0 chr6 118169400 118169451 -71110103 + (CA)n Simple_repeat Simple_repeat 2 52 0 2044 211 43 18 chr6 118169570 118170062 -71109492 - MLT1D LTR MaLR -1 504 1 21 36 0 0 chr6 118170476 118170504 -71109050 + AT_rich Low_complexity Low_complexity 1 28 0 247 310 42 78 chr6 118171234 118171376 -71108178 + MIR SINE MIR 41 177 -85 310 336 63 13 chr6 118171611 118171926 -71107628 + L1MC4a LINE L1 4734 5064 -1082 284 214 0 18 chr6 118172078 118172134 -71107420 + L2 LINE L2 2924 2978 -335 761 249 67 75 chr6 118172218 118172709 -71106845 + L1MC4a LINE L1 5315 5801 -2007 1174 209 106 0 chr6 118172712 118172966 -71106588 + AluJo SINE Alu 1 281 -31 186 43 0 0 chr6 118172967 118172990 -71106564 + (GAGAA)n Simple_repeat Simple_repeat 5 27 0 579 161 9 39 chr6 118173001 118173231 -71106323 + GA-rich Low_complexity Low_complexity 1 223 0 545 166 18 35 chr6 118173454 118173623 -71105931 + GA-rich Low_complexity Low_complexity 3 168 0 377 246 51 8 chr6 118173630 118173748 -71105806 + L1MC4a LINE L1 5803 5925 -1883 298 298 44 26 chr6 118174006 118174120 -71105434 + MIR SINE MIR 25 140 -68 315 0 0 0 chr6 118174462 118174497 -71105057 + (TG)n Simple_repeat Simple_repeat 1 35 0 927 181 112 0 chr6 118174851 118175039 -71104515 + MER2 DNA MER2_type 2 210 -135 301 248 75 75 chr6 118175285 118175323 -71104231 + MLT1F LTR MaLR 13 50 -540 4933 106 27 10 chr6 118175323 118176098 -71103456 + L1MA3 LINE L1 5516 6303 -2 301 248 75 75 chr6 118176098 118176192 -71103362 + MLT1F LTR MaLR 49 145 -445 * 750 224 18 0 chr6 118176191 118176356 -71103198 + MER45A DNA AcHobo 11 178 0 430 207 68 20 chr6 118176356 118176632 -71102922 + MLT1F LTR MaLR 141 530 -12 1472 122 143 8 chr6 118177029 118177266 -71102288 - AluSg1 SINE Alu -19 290 22 1609 69 0 5 chr6 118177266 118177468 -71102086 - AluY SINE Alu -110 201 1 547 294 83 9 chr6 118177681 118177899 -71101655 - MIR SINE MIR -10 252 19 1821 125 107 0 chr6 118179168 118179449 -71100105 - AluSq SINE Alu -2 311 1 199 365 72 0 chr6 118179476 118179643 -71099911 + MIR SINE MIR 84 262 0 28 0 0 0 chr6 118179892 118179920 -71099634 + AT_rich Low_complexity Low_complexity 1 28 0 934 123 0 36 chr6 118180318 118180456 -71099098 - FLAM_C SINE Alu -10 133 1 21 0 0 0 chr6 118180685 118180706 -71098848 + AT_rich Low_complexity Low_complexity 1 21 0 195 129 0 0 chr6 118181842 118181873 -71097681 + (A)n Simple_repeat Simple_repeat 1 31 0 195 271 0 106 chr6 118182913 118182998 -71096556 - MIR SINE MIR -43 219 144 182 345 0 0 chr6 118183044 118183099 -71096455 - MIR SINE MIR -121 87 33 1920 140 39 0 chr6 118185272 118185558 -71093996 + AluSx SINE Alu 1 297 -15 561 230 48 42 chr6 118187543 118187708 -71091846 + Charlie8 DNA MER1_type 64 229 -2188 8166 201 36 30 chr6 118188235 118188965 -71090589 + L1MB7 LINE L1 3244 3968 -2216 1269 153 82 82 chr6 118188965 118189330 -71090224 - MLT1A1 LTR MaLR 0 365 1 8166 201 36 30 chr6 118189330 118190761 -71088793 + L1MB7 LINE L1 3968 5425 -759 2199 154 43 31 chr6 118190761 118191182 -71088372 + MSTB LTR MaLR 1 426 0 8166 201 36 30 chr6 118191182 118191867 -71087687 + L1MB7 LINE L1 5425 6104 -80 1714 175 3 10 chr6 118193222 118193514 -71086040 - AluJo SINE Alu -22 290 1 198 288 117 63 chr6 118193584 118193695 -71085859 - MIR SINE MIR -34 228 112 871 232 33 117 chr6 118193790 118193930 -71085624 + MLT1A1 LTR MaLR 7 157 -208 2163 118 0 0 chr6 118193930 118194227 -71085327 + AluSg SINE Alu 1 297 -13 871 232 33 117 chr6 118194227 118194478 -71085076 + MLT1A1 LTR MaLR 157 365 0 724 294 81 9 chr6 118194833 118195054 -71084500 - MIR SINE MIR -5 257 21 297 338 36 39 chr6 118195142 118195450 -71084104 + L1ME LINE L1 4 310 -5809 324 320 61 44 chr6 118195472 118195587 -71083967 + L1ME LINE L1 466 578 -5541 411 242 46 119 chr6 118195587 118196067 -71083487 + MER65A LTR ERV1 1 445 0 324 320 61 44 chr6 118196067 118196295 -71083259 + L1ME LINE L1 578 815 -5304 477 259 108 11 chr6 118196482 118196667 -71082887 + LTR16C LTR ERVL 238 440 -51 650 209 122 38 chr6 118196733 118197020 -71082534 + L1ME LINE L1 898 1208 -4911 636 269 73 76 chr6 118197128 118197284 -71082270 + L1ME LINE L1 2130 2285 -3844 919 123 0 7 chr6 118197284 118197430 -71082124 + L1PA13 LINE L1 6014 6158 -5 636 269 73 76 chr6 118197430 118197848 -71081706 + L1ME LINE L1 2285 2704 -3425 2178 109 0 20 chr6 118197848 118198152 -71081402 + AluSg SINE Alu 1 298 -12 636 269 73 76 chr6 118198152 118198233 -71081321 + L1ME LINE L1 2704 2784 -3345 * 649 255 119 60 chr6 118198229 118198566 -71080988 + L1ME LINE L1 5322 5690 -455 2336 100 3 0 chr6 118198566 118198877 -71080677 - AluSp SINE Alu -1 312 1 649 255 119 60 chr6 118198877 118198958 -71080596 + L1ME LINE L1 5690 5765 -380 500 317 86 27 chr6 118198967 118199514 -71080040 - L1ME LINE L1 -487 5675 5093 612 294 138 26 chr6 118199750 118200368 -71079186 - L1ME LINE L1 -1910 4236 3550 540 240 265 12 chr6 118200391 118200791 -71078763 + L1M4 LINE L1 4618 5118 -1028 850 193 22 48 chr6 118200792 118201020 -71078534 + L1MA10 LINE L1 5989 6210 -124 249 108 0 0 chr6 118201224 118201261 -71078293 + (T)n Simple_repeat Simple_repeat 1 37 0 2342 72 7 3 chr6 118201290 118201582 -71077972 - AluY SINE Alu -18 293 1 7966 138 42 12 chr6 118201730 118203045 -71076509 + Tigger4(Zombi) DNA MER2_type 205 1558 -1173 9725 127 10 1 chr6 118203231 118204796 -71074758 - L1P LINE L1 -1558 4588 3010 26 0 0 0 chr6 118205306 118205332 -71074222 + AT_rich Low_complexity Low_complexity 1 26 0 816 170 0 7 chr6 118206751 118206892 -71072662 + FLAM_C SINE Alu 1 140 -3 423 294 25 25 chr6 118207192 118207311 -71072243 - MIR SINE MIR -60 148 30 714 249 105 58 chr6 118208465 118208807 -71070747 + L2 LINE L2 2269 2626 -688 376 244 24 12 chr6 118208821 118208903 -71070651 + MIR SINE MIR 2 84 -178 1225 187 85 61 chr6 118208903 118209266 -71070288 - MER76 LTR ERV 0 688 317 1881 109 21 0 chr6 118209290 118209574 -71069980 - AluSx SINE Alu -22 290 1 441 143 14 0 chr6 118210131 118210201 -71069353 + U6 snRNA snRNA 1 71 -36 445 275 181 0 chr6 118210203 118210363 -71069191 + MIR SINE MIR 63 251 -11 196 242 167 8 chr6 118210385 118210505 -71069049 + MIR SINE MIR 123 261 -1 365 345 58 68 chr6 118210548 118211081 -71068473 + L2 LINE L2 2411 2938 -376 26 0 0 0 chr6 118212241 118212267 -71067287 + AT_rich Low_complexity Low_complexity 1 26 0 1549 198 0 7 chr6 118212345 118212618 -71066936 - AluJo SINE Alu -14 298 28 362 215 28 117 chr6 118213038 118213161 -71066393 + L1ME4a LINE L1 5710 5802 -319 639 164 0 41 chr6 118213161 118213283 -71066271 + FLAM_A SINE Alu 1 117 -16 362 215 28 117 chr6 118213283 118213406 -71066148 + L1ME4a LINE L1 5802 5934 -187 213 226 0 0 chr6 118213844 118213897 -71065657 + (TA)n Simple_repeat Simple_repeat 1 53 0 642 297 70 23 chr6 118214072 118214415 -71065139 - L1MC4a LINE L1 -1908 5900 5542 270 250 15 0 chr6 118214451 118214519 -71065035 - Charlie8 DNA MER1_type -8 2409 2341 1874 100 48 15 chr6 118214545 118214816 -71064738 + AluSx SINE Alu 26 305 -7 558 304 70 37 chr6 118214851 118215124 -71064430 - Charlie8 DNA MER1_type -2132 285 4 306 253 0 0 chr6 118215696 118215795 -71063759 + (TA)n Simple_repeat Simple_repeat 1 99 0 245 261 0 22 chr6 118215795 118215887 -71063667 + L1MC4 LINE L1 6614 6703 -1339 528 267 0 0 chr6 118215892 118216072 -71063482 + (TA)n Simple_repeat Simple_repeat 1 180 0 219 265 0 0 chr6 118216075 118216124 -71063430 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 381 306 0 0 chr6 118216124 118216304 -71063250 + (CATA)n Simple_repeat Simple_repeat 1 180 0 303 307 23 0 chr6 118216307 118216395 -71063159 + L1MC4 LINE L1 6614 6703 -1339 225 178 0 0 chr6 118216399 118216444 -71063110 + (TA)n Simple_repeat Simple_repeat 1 45 0 1358 189 91 0 chr6 118216444 118216708 -71062846 - AluJo SINE Alu -22 290 3 23 33 0 0 chr6 118217439 118217469 -71062085 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr6 118217715 118217748 -71061806 + AT_rich Low_complexity Low_complexity 1 33 0 348 315 105 7 chr6 118219301 118219444 -71060110 + L2 LINE L2 3116 3272 0 1249 238 10 3 chr6 118220011 118220310 -71059244 + L1MB3 LINE L1 4674 4974 -1172 13726 26 0 0 chr6 118220411 118222802 -71056752 + L1PA2 LINE L1 3763 6154 -1 241 163 153 20 chr6 118222858 118222956 -71056598 + L1ME4a LINE L1 5964 6074 -47 35 24 0 0 chr6 118223300 118223342 -71056212 + AT_rich Low_complexity Low_complexity 1 42 0 2244 79 21 3 chr6 118224928 118225218 -71054336 - AluY SINE Alu -16 295 1 247 300 0 0 chr6 118225336 118225386 -71054168 + Charlie1 DNA MER1_type 21 70 -2691 * 1078 176 49 29 chr6 118225385 118225629 -71053925 + Charlie1 DNA MER1_type 2343 2591 -170 4161 157 76 31 chr6 118225750 118226698 -71052856 + L1MB3 LINE L1 5038 6173 -10 1988 114 54 7 chr6 118227555 118227853 -71051701 + AluSx SINE Alu 1 312 0 1961 125 37 3 chr6 118227855 118228151 -71051403 + AluSx SINE Alu 1 306 -6 21 36 0 0 chr6 118228397 118228425 -71051129 + AT_rich Low_complexity Low_complexity 1 28 0 309 262 176 47 chr6 118228867 118229123 -71050431 + L1ME4a LINE L1 4877 5165 -981 2340 69 3 13 chr6 118229331 118229635 -71049919 + AluY SINE Alu 1 301 -10 307 266 62 40 chr6 118229949 118230126 -71049428 + L1ME4a LINE L1 5925 6105 -16 1844 144 11 0 chr6 118230262 118230546 -71049008 - AluJb SINE Alu -5 307 21 432 200 71 52 chr6 118230811 118230966 -71048588 + L1ME4a LINE L1 5959 6116 -5 2200 90 29 26 chr6 118230986 118231297 -71048257 + AluSx SINE Alu 1 312 0 23959 43 45 0 chr6 118231300 118234325 -71045229 + L1P LINE L1 1 3161 -2985 2782 90 8 8 chr6 118234567 118234944 -71044610 + LTR3b LTR ERVK 1 377 -123 2511 53 3 0 chr6 118234944 118235243 -71044311 + AluY SINE Alu 2 301 -10 294 302 208 13 chr6 118236036 118236195 -71043359 + MIR SINE MIR 50 239 -23 189 256 110 24 chr6 118236344 118236426 -71043128 - MIR SINE MIR 0 262 174 206 313 167 0 chr6 118236481 118236577 -71042977 + L2 LINE L2 3190 3301 -12 1979 107 38 24 chr6 118236578 118236869 -71042685 + AluSx SINE Alu 1 295 -17 1613 182 13 32 chr6 118238053 118238366 -71041188 - AluJb SINE Alu -5 307 1 21 0 0 0 chr6 118239445 118239466 -71040088 + AT_rich Low_complexity Low_complexity 1 21 0 2316 109 3 0 chr6 118239743 118240055 -71039499 + AluSq SINE Alu 1 313 0 191 321 0 18 chr6 118240148 118240204 -71039350 - MIR SINE MIR -137 71 17 371 325 82 5 chr6 118241058 118241143 -71038411 - MIR SINE MIR -13 249 172 453 290 153 33 chr6 118241143 118241502 -71038052 + MER93a LTR ERV1 1 402 0 371 325 82 5 chr6 118241502 118241622 -71037932 - MIR SINE MIR -90 172 28 35839 97 19 12 chr6 118241719 118247824 -71031730 + L1PA6 LINE L1 11 6154 0 1515 201 21 21 chr6 118248131 118248419 -71031135 + AluJo SINE Alu 1 288 -24 31 58 0 0 chr6 118248420 118248472 -71031082 + AT_rich Low_complexity Low_complexity 1 52 0 2433 85 0 3 chr6 118248969 118249274 -71030280 - AluSc SINE Alu -5 304 1 2088 120 3 7 chr6 118249857 118250158 -71029396 + AluSx SINE Alu 1 300 -12 321 339 90 37 chr6 118250264 118250453 -71029101 - MIR SINE MIR -13 249 51 1389 319 92 45 chr6 118251069 118252060 -71027494 - L2 LINE L2 0 3272 2243 297 288 50 0 chr6 118252604 118252684 -71026870 + L2 LINE L2 3230 3313 0 300 148 0 0 chr6 118253176 118253237 -71026317 + (TA)n Simple_repeat Simple_repeat 1 61 0 697 189 13 33 chr6 118253601 118253754 -71025800 + MER3 DNA MER1_type 50 199 -10 29 0 0 0 chr6 118253849 118253878 -71025676 + AT_rich Low_complexity Low_complexity 1 29 0 1134 214 8 24 chr6 118254161 118254413 -71025141 + AluJo SINE Alu 49 296 -16 1292 257 83 76 chr6 118254442 118255155 -71024399 + HAL1 LINE L1 21 738 -1769 785 250 0 6 chr6 118255160 118255316 -71024238 + AluJo SINE Alu 3 157 -155 830 233 69 5 chr6 118255408 118255610 -71023944 + MER20 DNA MER1_type 1 215 -4 1796 271 114 26 chr6 118255617 118256587 -71022967 + HAL1 LINE L1 750 1805 -702 1272 182 227 34 chr6 118256596 118256953 -71022601 + MSTB LTR MaLR 1 426 0 9302 128 18 51 chr6 118256955 118257323 -71022231 + MSTB-int LTR MaLR 3 382 -1198 1854 152 21 3 chr6 118257323 118257613 -71021941 - AluSx SINE Alu -15 297 3 9302 128 18 51 chr6 118257613 118257743 -71021811 + MSTB-int LTR MaLR 382 515 -1065 2267 109 0 0 chr6 118257743 118258046 -71021508 + AluSq SINE Alu 1 303 -10 9302 128 18 51 chr6 118258046 118259178 -71020376 + MSTB-int LTR MaLR 515 1580 0 794 170 220 20 chr6 118259178 118259378 -71020176 + MSTB LTR MaLR 1 240 -188 652 244 115 26 chr6 118260106 118260340 -71019214 + MIR SINE MIR 8 262 0 2725 245 99 9 chr6 118260478 118260597 -71018957 + L1ME3A LINE L1 5002 5109 -1061 181 0 69 0 chr6 118260597 118260626 -71018928 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 2725 245 99 9 chr6 118260626 118261552 -71018002 + L1ME3A LINE L1 5109 6150 -20 21 36 0 0 chr6 118262387 118262415 -71017139 + AT_rich Low_complexity Low_complexity 1 28 0 1169 249 56 117 chr6 118263106 118263712 -71015842 + L2 LINE L2 2402 2970 -344 311 276 86 17 chr6 118263712 118263828 -71015726 + L2 LINE L2 3190 3313 0 926 166 0 19 chr6 118263999 118264156 -71015398 + AluJo SINE Alu 140 293 -19 271 219 0 0 chr6 118264441 118264505 -71015049 + A-rich Low_complexity Low_complexity 1 64 0 34 0 0 0 chr6 118264973 118265007 -71014547 + AT_rich Low_complexity Low_complexity 1 34 0 28 29 0 0 chr6 118265245 118265280 -71014274 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr6 118265303 118265327 -71014227 + AT_rich Low_complexity Low_complexity 1 24 0 11296 205 10 38 chr6 118265748 118268644 -71010910 + L1P3 LINE L1 831 3654 -2807 2112 132 0 3 chr6 118268645 118268940 -71010614 + AluSg SINE Alu 2 295 -15 189 0 0 0 chr6 118268940 118268961 -71010593 + (TA)n Simple_repeat Simple_repeat 2 22 0 35045 104 12 11 chr6 118269090 118275222 -71004332 + L1PA7 LINE L1 11 6151 -3 2425 85 0 3 chr6 118275222 118275529 -71004025 + AluY SINE Alu 1 306 -5 5437 123 65 26 chr6 118275817 118276282 -71003272 - Tigger4(Zombi) DNA MER2_type 0 2731 2286 2055 143 10 0 chr6 118276282 118276582 -71002972 + AluSx SINE Alu 1 303 -9 5437 123 65 26 chr6 118276582 118276593 -71002961 - Tigger4(Zombi) DNA MER2_type -445 2286 2277 2310 100 0 10 chr6 118276593 118276892 -71002662 - AluSx SINE Alu -16 296 1 5437 123 65 26 chr6 118276892 118277487 -71002067 - Tigger4(Zombi) DNA MER2_type -454 2277 1534 228 203 136 0 chr6 118277963 118278022 -71001532 - MIR SINE MIR -77 185 119 2180 106 0 0 chr6 118278396 118278699 -71000855 + AluSx SINE Alu 1 303 0 21 36 0 0 chr6 118280040 118280068 -70999486 + AT_rich Low_complexity Low_complexity 1 28 0 249 159 0 0 chr6 118280345 118280389 -70999165 + (CA)n Simple_repeat Simple_repeat 1 44 0 1322 157 34 15 chr6 118280729 118280996 -70998558 + L1MB4 LINE L1 5909 6180 0 220 288 61 0 chr6 118281124 118281190 -70998364 - L2 LINE L2 0 3272 3203 23 86 0 0 chr6 118281675 118281733 -70997821 + AT_rich Low_complexity Low_complexity 1 58 0 222 303 84 25 chr6 118281805 118281924 -70997630 - MIR SINE MIR 0 262 137 2406 14 7 7 chr6 118281943 118282228 -70997326 - AluYa5 SINE Alu -26 285 1 2239 98 0 3 chr6 118282232 118282518 -70997036 - AluSc SINE Alu -20 289 5 226 338 66 15 chr6 118282525 118282661 -70996893 - MIR SINE MIR -114 148 6 1117 163 26 131 chr6 118282898 118283242 -70996312 + AluYb8 SINE Alu 1 308 0 408 324 93 7 chr6 118284368 118284507 -70995047 + MIR SINE MIR 38 188 -74 21 57 0 0 chr6 118284717 118284752 -70994802 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr6 118284967 118284999 -70994555 + AT_rich Low_complexity Low_complexity 1 32 0 2284 95 3 0 chr6 118285612 118285897 -70993657 - AluSx SINE Alu -26 286 1 1652 152 10 55 chr6 118286351 118286660 -70992894 + AluJo SINE Alu 1 295 -17 569 281 48 6 chr6 118287512 118287679 -70991875 + MIR SINE MIR 23 196 -66 186 118 0 0 chr6 118287688 118287722 -70991832 + (TAA)n Simple_repeat Simple_repeat 3 36 0 446 195 70 23 chr6 118287724 118287852 -70991702 - MIR SINE MIR -5 257 124 203 147 0 0 chr6 118288117 118288151 -70991403 + (CA)n Simple_repeat Simple_repeat 1 34 0 1629 220 151 43 chr6 118288417 118289018 -70990536 - L1MC4 LINE L1 -138 7904 7239 1618 166 83 0 chr6 118289019 118289321 -70990233 - L1MC4 LINE L1 -957 7085 6759 424 224 210 0 chr6 118289320 118289463 -70990091 - L1MC4a LINE L1 -1193 6615 6443 * 449 19 0 269 chr6 118289831 118289939 -70989615 - MADE1 DNA Mariner 0 80 2 1745 184 16 0 chr6 118290046 118290350 -70989204 + AluJb SINE Alu 3 311 -1 361 289 211 0 chr6 118290356 118290550 -70989004 + MIR SINE MIR 28 262 0 499 271 188 10 chr6 118291244 118291436 -70988118 - MIR SINE MIR -3 259 34 492 174 94 29 chr6 118291493 118291631 -70987923 + MER103 DNA DNA 9 155 -11 219 280 0 0 chr6 118291730 118291780 -70987774 + L2 LINE L2 3218 3267 -5 2209 105 0 20 chr6 118293891 118294196 -70985358 + AluSx SINE Alu 1 299 -13 911 226 0 0 chr6 118294294 118294471 -70985083 + AluJb SINE Alu 135 311 -1 353 273 80 34 chr6 118294688 118294864 -70984690 - L3b LINE CR1 -76 1507 1324 26 0 0 0 chr6 118295962 118295988 -70983566 + AT_rich Low_complexity Low_complexity 1 26 0 1005 134 0 7 chr6 118298309 118298458 -70981096 + AluJo SINE Alu 1 148 -164 435 243 169 41 chr6 118348592 118348789 -70930765 + L1MC5 LINE L1 7661 7896 -65 2429 75 3 0 chr6 118348789 118349084 -70930470 - AluY SINE Alu -15 296 1 435 243 169 41 chr6 118349084 118349129 -70930425 + L1MC5 LINE L1 7896 7934 -27 248 184 51 92 chr6 118349254 118349352 -70930202 - L1MC4a LINE L1 -1633 6175 6082 305 297 10 0 chr6 118349434 118349535 -70930019 - L1ME LINE L1 -296 5825 5724 2108 130 0 0 chr6 118349615 118349908 -70929646 + AluSq SINE Alu 1 293 -20 579 340 136 52 chr6 118350167 118350858 -70928696 + L2 LINE L2 2208 2956 -358 2239 125 0 0 chr6 118350868 118351165 -70928389 - AluSx SINE Alu -15 297 1 319 241 13 13 chr6 118351277 118351356 -70928198 - AluJ/FLAM SINE Alu -223 79 1 22 0 0 0 chr6 118351629 118351651 -70927903 + AT_rich Low_complexity Low_complexity 1 22 0 1916 125 31 7 chr6 118351736 118352025 -70927529 - AluSg SINE Alu -14 296 1 293 338 38 53 chr6 118352061 118352324 -70927230 + L3 LINE CR1 514 772 -805 2327 100 3 0 chr6 118352339 118352638 -70926916 + AluSq SINE Alu 1 300 -13 2230 92 0 26 chr6 118352650 118352956 -70926598 + AluSq SINE Alu 1 298 -15 1968 109 14 14 chr6 118352973 118353266 -70926288 + AluSq SINE Alu 8 300 -13 1174 88 69 0 chr6 118353269 118353429 -70926125 + AluSc SINE Alu 123 293 -16 1859 160 7 0 chr6 118354182 118354470 -70925084 - AluSx SINE Alu -22 290 1 762 204 14 7 chr6 118354945 118355152 -70924402 + AluSc SINE Alu 133 340 0 689 185 123 0 chr6 118355155 118355366 -70924188 - L1M4 LINE L1 -2940 3206 2970 27 0 0 0 chr6 118355388 118355415 -70924139 + AT_rich Low_complexity Low_complexity 1 27 0 16711 133 28 6 chr6 118355488 118358026 -70921528 + L1M1 LINE L1 15 2606 -4959 509 160 0 32 chr6 118358356 118358450 -70921104 + AluSg/x SINE Alu 215 305 -5 2332 100 0 0 chr6 118358455 118358754 -70920800 + AluSg SINE Alu 1 299 -11 2386 94 0 3 chr6 118358763 118359070 -70920484 + AluSq SINE Alu 1 306 -7 327 300 72 47 chr6 118359211 118359398 -70920156 - MIR SINE MIR 0 262 3 469 212 0 0 chr6 118359766 118359851 -70919703 + FLAM_A SINE Alu 5 89 -53 1500 180 97 66 chr6 118360351 118360925 -70918629 + LTR49 LTR ERV1 2 768 -19 220 282 105 8 chr6 118361111 118361235 -70918319 + MIR SINE MIR 127 262 0 2286 92 0 0 chr6 118361253 118361537 -70918017 - AluSc SINE Alu -25 284 1 27 0 0 0 chr6 118361795 118361822 -70917732 + AT_rich Low_complexity Low_complexity 1 27 0 1690 172 10 23 chr6 118361865 118362167 -70917387 - AluJo SINE Alu -12 300 3 2093 92 0 49 chr6 118362417 118362722 -70916832 - AluSq SINE Alu -23 290 1 186 325 154 26 chr6 118362835 118362952 -70916602 + MIR3 SINE MIR 15 146 -62 * 204 125 0 0 chr6 118362927 118362959 -70916595 + MIR SINE MIR 121 152 -110 393 147 118 20 chr6 118363361 118363461 -70916093 + Charlie7 DNA MER1_type 2443 2552 -60 562 317 41 12 chr6 118363461 118363704 -70915850 + MER34 LTR ERV1 1 250 -292 23 33 0 0 chr6 118363977 118364007 -70915547 + AT_rich Low_complexity Low_complexity 1 30 0 396 215 78 14 chr6 118364325 118364470 -70915084 - L1MC5 LINE L1 -20 8022 7806 1184 239 134 93 chr6 118364548 118365234 -70914320 - L1MC4a LINE L1 -1642 6166 5453 2196 90 3 0 chr6 118365274 118365562 -70913992 - AluSx SINE Alu -23 289 1 1064 193 82 99 chr6 118365859 118366212 -70913342 + MLT1B LTR MaLR 1 347 -43 617 191 0 0 chr6 118366233 118366338 -70913216 - AluJb SINE Alu -206 106 2 1221 183 54 20 chr6 118366353 118366648 -70912906 - AluJb SINE Alu -7 305 1 703 233 38 0 chr6 118366667 118366826 -70912728 - FRAM SINE Alu -1 165 1 1377 134 107 0 chr6 118366831 118367093 -70912461 - AluSq SINE Alu -13 290 1 182 324 29 0 chr6 118367330 118367398 -70912156 - L2 LINE L2 0 3313 3244 1065 219 12 109 chr6 118367460 118367780 -70911774 + AluJo SINE Alu 1 289 -13 1920 159 3 13 chr6 118367887 118368202 -70911352 + AluSx SINE Alu 1 312 0 491 289 105 21 chr6 118369173 118369363 -70910191 + L2 LINE L2 3106 3311 -2 900 163 34 0 chr6 118369573 118369720 -70909834 - MSTD LTR MaLR -4 392 241 485 270 111 107 chr6 118369878 118370411 -70909143 - LTR67 LTR ERVL -21 536 2 240 346 99 40 chr6 118370422 118370876 -70908678 + L2 LINE L2 2381 2861 -453 251 331 29 22 chr6 118370912 118371051 -70908503 + L2 LINE L2 2895 3034 -238 3012 169 224 9 chr6 118371078 118371829 -70907725 + MER52A LTR ERV1 1 912 -843 241 174 22 0 chr6 118371921 118371967 -70907587 - LTR67 LTR ERVL -509 48 2 237 255 142 19 chr6 118371978 118372084 -70907470 + L2 LINE L2 2381 2499 -815 600 178 10 1 chr6 118372212 118372330 -70907224 + MER52A LTR ERV1 908 1097 -658 2334 103 3 6 chr6 118372401 118372713 -70906841 + AluSq SINE Alu 1 311 -2 2331 169 97 12 chr6 118373353 118373381 -70906173 + LOR1b LTR ERV1 1 25 -436 2208 114 0 10 chr6 118373381 118373688 -70905866 - AluSc SINE Alu 0 309 6 2331 169 97 12 chr6 118373688 118374084 -70905470 + LOR1b LTR ERV1 25 461 0 841 240 64 15 chr6 118375544 118375748 -70903806 - MER58C DNA MER1_type -1 214 1 262 234 28 19 chr6 118376119 118376226 -70903328 + (TA)n Simple_repeat Simple_repeat 2 109 0 993 124 0 14 chr6 118376278 118376423 -70903131 - FLAM_C SINE Alu 0 143 1 898 169 0 0 chr6 118377218 118377360 -70902194 + AluJb SINE Alu 155 296 -16 238 293 121 10 chr6 118377459 118377558 -70901996 + MIR SINE MIR 33 142 -66 420 130 0 0 chr6 118377637 118377706 -70901848 + (TC)n Simple_repeat Simple_repeat 2 70 0 1840 130 4 4 chr6 118377707 118377976 -70901578 - AluSq SINE Alu -44 269 1 30 27 0 0 chr6 118378114 118378151 -70901403 + AT_rich Low_complexity Low_complexity 1 37 0 1886 167 0 7 chr6 118378295 118378594 -70900960 + AluJo SINE Alu 2 298 -14 3820 240 77 12 chr6 118378594 118378805 -70900749 - L1MEc LINE L1 -5223 1173 977 2068 120 3 0 chr6 118378805 118379121 -70900433 - AluSp SINE Alu 0 317 1 3820 240 77 12 chr6 118379121 118379975 -70899579 - L1MEc LINE L1 -5419 977 38 701 232 13 0 chr6 118379977 118380128 -70899426 + MER63 DNA MER1_type 908 1060 0 1691 190 17 14 chr6 118380363 118380653 -70898901 - AluSq SINE Alu -20 293 3 250 286 109 42 chr6 118381005 118381124 -70898430 + MLT1H LTR MaLR 93 219 -330 244 313 107 23 chr6 118381392 118381523 -70898031 - MIR SINE MIR -55 207 66 303 157 12 145 chr6 118381801 118381884 -70897670 + L2 LINE L2 3242 3313 0 1368 139 30 148 chr6 118382171 118382508 -70897046 - AluJo SINE Alu -5 297 1 22 70 0 0 chr6 118383053 118383096 -70896458 + AT_rich Low_complexity Low_complexity 1 43 0 2374 71 0 0 chr6 118383118 118383440 -70896114 + AluSc SINE Alu 1 322 0 21 0 0 0 chr6 118384293 118384314 -70895240 + AT_rich Low_complexity Low_complexity 1 21 0 359 260 20 0 chr6 118384484 118384584 -70894970 - HAL1b LINE L1 -563 785 684 719 224 0 0 chr6 118385272 118385397 -70894157 - FLAM_A SINE Alu -8 125 1 1007 180 23 0 chr6 118386152 118386324 -70893230 + AluJb SINE Alu 137 312 0 5268 140 29 62 chr6 118386382 118386444 -70893110 - L1MC1 LINE L1 0 6333 6270 2383 99 0 0 chr6 118386444 118386746 -70892808 + AluSx SINE Alu 1 302 -10 5268 140 29 62 chr6 118386746 118387107 -70892447 - L1MC1 LINE L1 -63 6270 5898 363 23 0 0 chr6 118387107 118387151 -70892403 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 5268 140 29 62 chr6 118387151 118387769 -70891785 - L1MC1 LINE L1 -435 5898 5326 963 44 0 0 chr6 118387770 118387884 -70891670 - AluY SINE Alu -17 294 181 1165 42 7 7 chr6 118388122 118388264 -70891290 - AluY SINE Alu -169 142 1 1877 131 34 17 chr6 118388266 118388557 -70890997 - AluSx SINE Alu -16 296 1 3845 211 18 37 chr6 118388559 118388901 -70890653 - L1MC1 LINE L1 -820 5326 4979 2225 120 3 0 chr6 118388901 118389201 -70890353 - AluSq SINE Alu -12 301 1 3845 211 18 37 chr6 118389201 118389438 -70890116 - L1MC1 LINE L1 -1167 4979 4739 1615 189 33 7 chr6 118389438 118389740 -70889814 + AluJb SINE Alu 3 312 0 3845 211 18 37 chr6 118389740 118390493 -70889061 - L1MC1 LINE L1 -1407 4739 3887 1362 95 11 32 chr6 118390494 118390665 -70888889 - AluSg/x SINE Alu -9 301 136 2297 84 0 32 chr6 118390665 118390975 -70888579 - AluY SINE Alu -10 301 2 1362 95 11 32 chr6 118390975 118390993 -70888561 - AluSg/x SINE Alu -174 136 119 1972 231 50 17 chr6 118390993 118391594 -70887960 - L1MC1 LINE L1 -2274 3872 3252 408 65 0 0 chr6 118391598 118391660 -70887894 - Alu SINE Alu -2 310 249 2204 111 3 3 chr6 118392036 118392342 -70887212 + AluSq SINE Alu 1 306 -7 21 0 0 0 chr6 118392402 118392423 -70887131 + AT_rich Low_complexity Low_complexity 1 21 0 412 227 146 5 chr6 118393108 118393293 -70886261 - MER112 DNA MER1_type -12 248 38 2317 101 3 0 chr6 118393310 118393608 -70885946 - AluY SINE Alu -12 299 1 601 169 68 0 chr6 118393668 118393786 -70885768 + MIR SINE MIR 99 224 -38 396 217 25 96 chr6 118393969 118394250 -70885304 - L1MC5 LINE L1 -214 7747 7487 1847 201 40 9 chr6 118394250 118394679 -70884875 - L1MD3 LINE L1 0 7995 7554 452 97 272 53 chr6 118394679 118394793 -70884761 + MER44D DNA MER2_type 1 409 -200 1298 215 168 6 chr6 118395030 118395369 -70884185 - MSTD LTR MaLR -2 394 1 25 75 0 0 chr6 118395499 118395552 -70884002 + AT_rich Low_complexity Low_complexity 1 53 0 294 125 0 0 chr6 118396114 118396162 -70883392 + (CA)n Simple_repeat Simple_repeat 1 48 0 194 327 109 0 chr6 118396175 118396276 -70883278 + MIR3 SINE MIR 87 198 -10 24 32 0 0 chr6 118396607 118396638 -70882916 + AT_rich Low_complexity Low_complexity 1 31 0 2191 89 0 4 chr6 118396976 118397276 -70882278 + AluSc SINE Alu 1 299 0 2314 107 0 0 chr6 118398107 118398407 -70881147 + AluSx SINE Alu 1 300 -12 2347 70 3 7 chr6 118398407 118398705 -70880849 + AluY SINE Alu 1 297 -14 998 172 0 35 chr6 118398714 118398888 -70880666 + AluJo SINE Alu 1 168 -144 792 247 108 25 chr6 118399002 118399326 -70880228 + HAL1 LINE L1 461 811 -1696 2198 252 97 34 chr6 118399333 118400433 -70879121 + HAL1 LINE L1 850 2019 -488 2841 241 65 26 chr6 118400448 118400505 -70879049 + L1MD2 LINE L1 4140 4193 -1953 2206 117 0 0 chr6 118400505 118400805 -70878749 + AluSx SINE Alu 1 300 -12 2841 241 65 26 chr6 118400805 118401757 -70877797 + L1MD2 LINE L1 4193 5189 -957 * 4878 173 13 50 chr6 118401750 118403324 -70876230 + L1M1 LINE L1 4096 5577 -727 2251 205 70 72 chr6 118403320 118403862 -70875692 + L1MD2 LINE L1 5625 6167 -192 * 2342 112 0 0 chr6 118403862 118404166 -70875388 + AluSx SINE Alu 1 304 -8 2251 205 70 72 chr6 118404166 118404335 -70875219 + L1MD2 LINE L1 6167 6335 -24 864 245 59 57 chr6 118404340 118404685 -70874869 + HAL1 LINE L1 2030 2378 -129 2227 99 10 17 chr6 118404685 118404820 -70874734 + AluSq SINE Alu 1 135 -178 2290 87 3 0 chr6 118404820 118405108 -70874446 + AluSp SINE Alu 1 289 -24 2227 99 10 17 chr6 118405108 118405274 -70874280 + AluSq SINE Alu 135 300 -13 864 245 59 57 chr6 118405274 118405405 -70874149 + HAL1 LINE L1 2378 2507 0 1435 184 8 16 chr6 118406197 118406453 -70873101 + AluJo SINE Alu 37 290 -22 1045 83 15 0 chr6 118406462 118406595 -70872959 + AluSq/x SINE Alu 1 135 -177 2423 53 3 31 chr6 118407547 118407865 -70871689 + AluY SINE Alu 1 309 -2 2771 104 52 166 chr6 118407920 118408631 -70870923 + MER51A LTR ERV1 1 630 -4 1742 175 7 0 chr6 118408713 118408999 -70870555 + MER1B DNA MER1_type 52 339 0 562 253 28 51 chr6 118409005 118409183 -70870371 - L2 LINE L2 -34 3279 3106 28 0 0 0 chr6 118410434 118410462 -70869092 + AT_rich Low_complexity Low_complexity 1 28 0 1177 163 128 69 chr6 118412552 118412841 -70866713 - 7SLRNA srpRNA srpRNA -2 318 13 2089 134 0 0 chr6 118413096 118413403 -70866151 + AluSx SINE Alu 1 307 0 2334 88 7 0 chr6 118413405 118413713 -70865841 + AluY SINE Alu 1 310 -1 583 121 57 0 chr6 118413713 118413853 -70865701 + GA-rich Low_complexity Low_complexity 3 150 0 1657 181 20 10 chr6 118414163 118414484 -70865070 - AluJo SINE Alu 0 312 1 1044 154 0 0 chr6 118414546 118414702 -70864852 + FRAM SINE Alu 1 156 -10 647 174 0 0 chr6 118415181 118415279 -70864275 - FLAM_A SINE Alu -20 122 25 257 313 48 12 chr6 118416910 118416993 -70862561 + L2 LINE L2 3202 3287 -26 1515 106 25 30 chr6 118417651 118417888 -70861666 + AluSx SINE Alu 1 236 -76 21 0 0 0 chr6 118418028 118418049 -70861505 + AT_rich Low_complexity Low_complexity 1 21 0 2527 74 0 0 chr6 118419129 118419439 -70860115 - AluY SINE Alu -1 310 1 209 289 254 0 chr6 118419702 118419816 -70859738 + MIR3 SINE MIR 3 145 -63 5631 45 0 4 chr6 118420057 118420792 -70858762 - L1PA5 LINE L1 -2006 4140 3409 9757 47 4 2 chr6 118420794 118422832 -70856722 + L1PA5 LINE L1 4125 6177 0 444 278 15 23 chr6 118422942 118423075 -70856479 + MIR SINE MIR 36 167 -95 2222 112 0 3 chr6 118423148 118423443 -70856111 - AluSc SINE Alu -1 308 15 1690 194 20 3 chr6 118423656 118423829 -70855725 - AluJo SINE Alu -8 304 122 189 0 0 0 chr6 118423829 118423850 -70855704 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1690 194 20 3 chr6 118423850 118423975 -70855579 - AluJo SINE Alu -190 122 1 236 128 0 21 chr6 118425261 118425308 -70854246 - L1PA16 LINE L1 -45 6121 6076 275 85 21 0 chr6 118425462 118425509 -70854045 + (TC)n Simple_repeat Simple_repeat 2 49 0 426 278 9 0 chr6 118425512 118425627 -70853927 + L1M4 LINE L1 4029 4144 -2002 * 802 257 89 20 chr6 118425625 118425983 -70853571 + L1M4 LINE L1 4909 5291 -855 2313 117 0 0 chr6 118426929 118427237 -70852317 + AluSx SINE Alu 1 308 -4 854 167 44 49 chr6 118427675 118427879 -70851675 + MER3 DNA MER1_type 6 208 -1 305 267 173 7 chr6 118428174 118428324 -70851230 + L1MCa LINE L1 2271 2445 -3981 1408 195 62 3 chr6 118428363 118428717 -70850837 + MER95 LTR ERV 1 375 -56 1081 154 78 139 chr6 118428849 118429194 -70850360 - MLT2D LTR ERVL -8 406 83 476 285 156 40 chr6 118429227 118429574 -70849980 + L1MCa LINE L1 2615 3001 -3425 405 318 56 47 chr6 118430080 118430309 -70849245 + MLT1I LTR MaLR 86 320 -89 2252 107 0 7 chr6 118430309 118430607 -70848947 + AluSx SINE Alu 1 296 -16 405 318 56 47 chr6 118430607 118430698 -70848856 + MLT1I LTR MaLR 320 409 0 24 0 0 0 chr6 118430820 118430844 -70848710 + AT_rich Low_complexity Low_complexity 1 24 0 312 253 98 58 chr6 118431157 118431382 -70848172 + MLT1H LTR MaLR 206 439 -110 2236 102 0 10 chr6 118431563 118431867 -70847687 - AluSx SINE Alu -7 305 5 761 138 0 82 chr6 118432530 118432689 -70846865 + FRAM SINE Alu 23 168 -8 349 341 36 0 chr6 118432756 118432894 -70846660 - MIR SINE MIR -3 259 117 322 310 9 18 chr6 118432905 118433018 -70846536 + MER5A DNA MER1_type 4 115 -74 2275 76 3 23 chr6 118433052 118433353 -70846201 + AluSc SINE Alu 1 295 -14 1823 128 59 3 chr6 118433375 118433663 -70845891 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr6 118433899 118433922 -70845632 + AT_rich Low_complexity Low_complexity 1 23 0 208 243 14 14 chr6 118434336 118434406 -70845148 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 257 290 178 0 chr6 118435064 118435171 -70844383 - MIR SINE MIR -1 261 136 1274 151 5 10 chr6 118435171 118435377 -70844177 + AluJb SINE Alu 87 291 -21 184 355 0 84 chr6 118435380 118435487 -70844067 - MIR SINE MIR -118 144 47 2182 87 35 7 chr6 118436404 118436693 -70842861 + AluSc SINE Alu 1 297 -12 273 180 0 0 chr6 118437090 118437140 -70842414 - AluJ/FLAM SINE Alu -216 86 37 2779 186 16 14 chr6 118437151 118437725 -70841829 - L1MDb LINE L1 -5177 1232 658 1062 285 20 7 chr6 118437793 118438098 -70841456 - L1MDb LINE L1 -6094 315 7 882 176 0 29 chr6 118438108 118438278 -70841276 - FRAM SINE Alu -1 175 11 336 286 88 0 chr6 118438365 118438456 -70841098 - L2 LINE L2 -8 3305 3207 5123 139 39 37 chr6 118438915 118439241 -70840313 + L1PA16 LINE L1 4697 5021 -1145 1657 171 11 7 chr6 118439241 118439521 -70840033 - AluJb SINE Alu -25 287 7 5123 139 39 37 chr6 118439521 118440686 -70838868 + L1PA16 LINE L1 5021 6166 0 198 229 33 33 chr6 118440705 118440766 -70838788 - L2 LINE L2 -2737 577 517 3473 137 26 11 chr6 118440877 118441490 -70838064 - L1MA3 LINE L1 0 6305 5684 2077 117 24 0 chr6 118442165 118442455 -70837099 - AluSx SINE Alu -15 297 1 285 93 0 0 chr6 118442516 118442559 -70836995 - MADE1 DNA Mariner -34 46 4 2040 93 0 0 chr6 118442779 118443037 -70836517 - AluSx SINE Alu -54 258 1 1541 156 0 92 chr6 118443040 118443208 -70836346 - AluJo SINE Alu -11 301 174 2007 92 13 60 chr6 118443208 118443525 -70836029 - AluY SINE Alu -9 302 1 1541 156 0 92 chr6 118443525 118443670 -70835884 - AluJo SINE Alu -138 174 17 403 254 198 30 chr6 118443871 118444068 -70835486 + MIR SINE MIR 6 235 -27 9544 159 15 11 chr6 118444259 118445390 -70834164 - L1PA13 LINE L1 -2 6161 5036 2313 108 0 0 chr6 118445390 118445696 -70833858 - AluSg SINE Alu -4 306 1 9544 159 15 11 chr6 118445696 118447161 -70832393 - L1PA13 LINE L1 -1127 5036 3551 215 214 0 18 chr6 118448464 118448520 -70831034 + (CCCCG)n Simple_repeat Simple_repeat 3 57 0 310 292 84 99 chr6 118448970 118449237 -70830317 - L1M2 LINE L1 -6078 771 510 186 43 0 0 chr6 118449237 118449260 -70830294 + (CGGGG)n Simple_repeat Simple_repeat 1 23 0 310 292 84 99 chr6 118449260 118449396 -70830158 - L1M2 LINE L1 -6339 510 374 21 57 0 0 chr6 118451435 118451470 -70828084 + AT_rich Low_complexity Low_complexity 1 35 0 32 57 0 0 chr6 118452301 118452354 -70827200 + AT_rich Low_complexity Low_complexity 1 53 0 25 65 0 0 chr6 118453861 118453907 -70825647 + AT_rich Low_complexity Low_complexity 1 46 0 2074 129 3 0 chr6 118454915 118455209 -70824345 - AluSx SINE Alu -12 300 6 38 75 0 0 chr6 118455418 118455498 -70824056 + AT_rich Low_complexity Low_complexity 1 80 0 23 0 0 0 chr6 118455561 118455584 -70823970 + AT_rich Low_complexity Low_complexity 1 23 0 256 361 9 37 chr6 118455661 118455769 -70823785 - L2 LINE L2 -60 3212 3108 2260 95 7 0 chr6 118455977 118456273 -70823281 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr6 118456401 118456423 -70823131 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 118457944 118457968 -70821586 + AT_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr6 118458307 118458351 -70821203 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr6 118459309 118459332 -70820222 + AT_rich Low_complexity Low_complexity 1 23 0 534 291 12 52 chr6 118459536 118459708 -70819846 - MIR3 SINE MIR -31 177 13 21 36 0 0 chr6 118460324 118460352 -70819202 + AT_rich Low_complexity Low_complexity 1 28 0 290 315 22 0 chr6 118462255 118462344 -70817210 + CT-rich Low_complexity Low_complexity 1 91 0 22 35 0 0 chr6 118462880 118462909 -70816645 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 118465761 118465782 -70813772 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 118468175 118468206 -70811348 + AT_rich Low_complexity Low_complexity 1 31 0 26 64 0 0 chr6 118468970 118469017 -70810537 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr6 118469085 118469108 -70810446 + AT_rich Low_complexity Low_complexity 1 23 0 2248 97 0 3 chr6 118469191 118469490 -70810064 - AluSg SINE Alu -12 298 1 21 0 0 0 chr6 118470114 118470135 -70809419 + AT_rich Low_complexity Low_complexity 1 21 0 2409 60 3 7 chr6 118470834 118471136 -70808418 - AluY SINE Alu -10 301 1 1206 156 5 18 chr6 118471368 118471586 -70807968 - L1MC1 LINE L1 -18 6315 6101 23 0 0 0 chr6 118471653 118471676 -70807878 + AT_rich Low_complexity Low_complexity 1 23 0 548 172 82 33 chr6 118471995 118472117 -70807437 - FLAM_A SINE Alu -5 128 1 1458 191 43 11 chr6 118473038 118473316 -70806238 + AluJb SINE Alu 1 287 -15 863 175 13 13 chr6 118473322 118473476 -70806078 - FRAM SINE Alu -12 154 1 515 277 129 22 chr6 118473710 118473934 -70805620 + MIR SINE MIR 6 253 -9 319 313 28 48 chr6 118473953 118474156 -70805398 + MIR SINE MIR 16 206 -56 1560 169 10 48 chr6 118474245 118474410 -70805144 - AluJo SINE Alu -11 301 152 2437 76 0 0 chr6 118474410 118474711 -70804843 - AluY SINE Alu -10 301 1 1560 169 10 48 chr6 118474711 118474858 -70804696 - AluJo SINE Alu -160 152 1 2164 120 16 3 chr6 118475088 118475397 -70804157 + AluSq SINE Alu 1 313 0 24 0 0 0 chr6 118475441 118475465 -70804089 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr6 118475465 118475486 -70804068 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1568 163 3 66 chr6 118475488 118475789 -70803765 - AluJo SINE Alu -30 282 1 259 125 0 0 chr6 118479020 118479060 -70800494 + LTR62 LTR ERVK 1 40 -679 27 29 0 0 chr6 118479536 118479570 -70799984 + AT_rich Low_complexity Low_complexity 1 34 0 2043 120 0 3 chr6 118479757 118480062 -70799492 - AluSx SINE Alu 0 304 1 26 30 0 0 chr6 118480453 118480486 -70799068 + AT_rich Low_complexity Low_complexity 1 33 0 2219 114 0 0 chr6 118480619 118480916 -70798638 + AluSx SINE Alu 1 297 -15 2305 119 0 0 chr6 118481999 118482309 -70797245 + AluSg SINE Alu 1 310 0 2259 94 0 0 chr6 118482600 118482910 -70796644 - AluSx SINE Alu 0 310 1 236 253 67 27 chr6 118483399 118483437 -70796117 - L2 LINE L2 -16 3256 3221 1615 152 0 98 chr6 118483437 118483772 -70795782 - AluJb SINE Alu -10 302 1 236 253 67 27 chr6 118483772 118483808 -70795746 - L2 LINE L2 -51 3221 3179 365 335 48 67 chr6 118483927 118484240 -70795314 - L2 LINE L2 -50 3222 2916 625 197 31 31 chr6 118484821 118484948 -70794606 - FRAM SINE Alu -14 162 36 2075 144 0 0 chr6 118485350 118485656 -70793898 - AluSg SINE Alu -4 306 1 301 304 208 7 chr6 118486166 118486334 -70793220 + MIR SINE MIR 21 225 -21 24 0 0 0 chr6 118486357 118486381 -70793173 + AT_rich Low_complexity Low_complexity 1 24 0 349 266 89 72 chr6 118486530 118486767 -70792787 + MLT1L LTR MaLR 1 241 -374 541 183 28 35 chr6 118486915 118486981 -70792573 - L1ME4a LINE L1 -3 6118 6053 2217 88 9 25 chr6 118486981 118487298 -70792256 - AluSx SINE Alu 0 312 1 541 183 28 35 chr6 118487298 118487373 -70792181 - L1ME4a LINE L1 -68 6053 5978 23 0 0 0 chr6 118487697 118487720 -70791834 + AT_rich Low_complexity Low_complexity 1 23 0 2123 127 0 0 chr6 118489827 118490118 -70789436 + AluY SINE Alu 5 295 -16 294 298 38 0 chr6 118490259 118490390 -70789164 + MER103 DNA DNA 10 145 -21 1416 204 0 32 chr6 118490584 118490868 -70788686 - AluJo SINE Alu -7 305 31 2166 126 3 0 chr6 118491362 118491664 -70787890 - AluSq SINE Alu -8 305 3 236 337 0 22 chr6 118491724 118491813 -70787741 - MER5C DNA MER1_type -224 100 14 876 191 130 17 chr6 118492005 118492235 -70787319 + MER63C DNA MER1_type 5 260 -670 1381 160 86 8 chr6 118492235 118492491 -70787063 - AluJo SINE Alu -1 311 36 1997 188 17 22 chr6 118492491 118492905 -70786649 + MER63C DNA MER1_type 255 666 -264 734 274 91 39 chr6 118492905 118493212 -70786342 - MER34 LTR ERV1 0 542 220 2167 262 90 74 chr6 118493212 118493754 -70785800 - L1M LINE L1 -812 5334 4802 2191 111 140 11 chr6 118493754 118494133 -70785421 + MSTA LTR MaLR 1 428 0 2167 262 90 74 chr6 118494133 118494428 -70785126 - L1M LINE L1 -1344 4802 4513 2030 189 47 20 chr6 118494428 118494877 -70784677 + MER65C LTR ERV1 1 461 0 2167 262 90 74 chr6 118494877 118495168 -70784386 - L1M LINE L1 -1633 4513 4228 1249 172 143 4 chr6 118495168 118495412 -70784142 - AluJo SINE Alu -30 282 5 2167 262 90 74 chr6 118495412 118495543 -70784011 - L1M LINE L1 -1918 4228 4101 2143 113 3 0 chr6 118495543 118495834 -70783720 - AluSx SINE Alu -20 292 1 2167 262 90 74 chr6 118495834 118496360 -70783194 - L1M LINE L1 -2045 4101 3585 2137 100 7 26 chr6 118496360 118496669 -70782885 - AluSx SINE Alu -9 303 1 2167 262 90 74 chr6 118496669 118497006 -70782548 - L1M LINE L1 -2561 3585 3255 1689 174 23 13 chr6 118497006 118497311 -70782243 - AluSx SINE Alu -2 310 3 2167 262 90 74 chr6 118497311 118497369 -70782185 - L1M LINE L1 -2891 3255 3199 2082 120 9 22 chr6 118497369 118497685 -70781869 - AluSx SINE Alu 0 312 1 2167 262 90 74 chr6 118497685 118498171 -70781383 - L1M LINE L1 -2947 3199 2569 444 239 50 126 chr6 118498179 118498353 -70781201 - L1MEc LINE L1 -3939 2457 2271 6897 74 36 23 chr6 118498353 118499818 -70779736 - SVA Other Other -991 1386 26 444 239 50 126 chr6 118499818 118499861 -70779693 - L1MEc LINE L1 -4125 2271 2226 2069 91 39 7 chr6 118499861 118500147 -70779407 - AluSp SINE Alu -18 295 1 444 239 50 126 chr6 118500147 118500275 -70779279 - L1MEc LINE L1 -4170 2226 2090 279 0 0 0 chr6 118500275 118500306 -70779248 + (TG)n Simple_repeat Simple_repeat 2 32 0 1716 177 10 24 chr6 118500306 118500600 -70778954 - AluJb SINE Alu -22 290 1 444 239 50 126 chr6 118500600 118500728 -70778826 - L1MEc LINE L1 -4304 2092 2016 309 351 79 0 chr6 118500758 118500923 -70778631 - L1M4 LINE L1 -960 5186 5009 1629 150 41 20 chr6 118500980 118501273 -70778281 + AluJo SINE Alu 1 299 -13 2047 124 10 3 chr6 118501344 118501642 -70777912 + AluSx SINE Alu 1 300 -12 2322 73 0 0 chr6 118501808 118502094 -70777460 - AluY SINE Alu -25 286 1 206 396 30 20 chr6 118502206 118502307 -70777247 - L2 LINE L2 -33 3239 3138 442 318 141 40 chr6 118502532 118502715 -70776839 - L2 LINE L2 -446 2868 2705 1312 168 26 9 chr6 118502715 118502947 -70776607 + MER46A DNA MER2_type 1 236 0 442 318 141 40 chr6 118502947 118503366 -70776188 - L2 LINE L2 -609 2705 2205 31 0 0 0 chr6 118503716 118503747 -70775807 + AT_rich Low_complexity Low_complexity 1 31 0 219 114 23 23 chr6 118503747 118503791 -70775763 + (TA)n Simple_repeat Simple_repeat 1 44 0 1662 199 51 9 chr6 118503793 118504283 -70775271 - MER90 LTR ERV1 -23 552 1 790 204 6 29 chr6 118504626 118504790 -70774764 + FRAM SINE Alu 1 161 -151 2478 80 0 0 chr6 118504790 118505101 -70774453 + AluY SINE Alu 1 311 0 24 53 0 0 chr6 118505135 118505173 -70774381 + AT_rich Low_complexity Low_complexity 1 38 0 29 0 0 0 chr6 118506937 118506966 -70772588 + AT_rich Low_complexity Low_complexity 1 29 0 1400 204 4 0 chr6 118506974 118507229 -70772325 - AluJo SINE Alu -56 256 1 228 236 181 55 chr6 118507295 118507422 -70772132 + L1ME4a LINE L1 5666 5808 -2000 1935 106 7 7 chr6 118507476 118507749 -70771805 - AluSp SINE Alu -17 296 24 225 217 217 23 chr6 118508113 118508242 -70771312 + L1ME4a LINE L1 5968 6121 0 53 40 0 0 chr6 118508411 118508485 -70771069 + AT_rich Low_complexity Low_complexity 1 74 0 404 215 248 13 chr6 118508506 118508655 -70770899 - MIR SINE MIR 0 262 79 207 0 0 0 chr6 118509957 118509980 -70769574 + (T)n Simple_repeat Simple_repeat 1 23 0 735 270 29 10 chr6 118510246 118510450 -70769104 - MER3 DNA MER1_type 0 209 2 556 291 60 7 chr6 118510721 118510872 -70768682 + MIR3 SINE MIR 19 177 -31 202 309 73 58 chr6 118511065 118511256 -70768298 - L2 LINE L2 -1323 1991 1798 2122 120 13 7 chr6 118511300 118511601 -70767953 - AluSx SINE Alu -9 303 1 1055 256 135 60 chr6 118511618 118511670 -70767884 - HAL1 LINE L1 -1 2506 2459 3423 61 0 26 chr6 118511670 118512126 -70767428 - MLT2A1 LTR ERVL 0 444 1 1055 256 135 60 chr6 118512126 118513236 -70766318 - HAL1 LINE L1 -48 2459 1223 1337 147 84 47 chr6 118513262 118513599 -70765955 + MSTA LTR MaLR 1 428 0 549 244 138 26 chr6 118513609 118513921 -70765633 - HAL1 LINE L1 -1343 1164 818 2150 107 4 0 chr6 118514085 118514402 -70765152 - AluSq SINE Alu 0 318 1 832 299 62 42 chr6 118514402 118514760 -70764794 - MLT1I LTR MaLR -19 390 26 1376 163 9 21 chr6 118515322 118515555 -70763999 - AluJo SINE Alu -17 295 66 32 0 0 0 chr6 118515582 118515614 -70763940 + AT_rich Low_complexity Low_complexity 1 32 0 710 145 8 8 chr6 118515618 118515735 -70763819 - FLAM_C SINE Alu -16 117 1 2597 44 0 0 chr6 118516153 118516449 -70763105 + AluY SINE Alu 1 296 -15 37 23 0 0 chr6 118517088 118517132 -70762422 + AT_rich Low_complexity Low_complexity 1 44 0 1531 157 4 27 chr6 118517908 118518169 -70761385 + AluJb SINE Alu 44 298 -14 21 36 0 0 chr6 118518268 118518296 -70761258 + AT_rich Low_complexity Low_complexity 1 28 0 2430 229 92 28 chr6 118518509 118518788 -70760766 - L1ME2 LINE L1 -10 6154 5894 895 230 92 99 chr6 118518788 118518986 -70760568 + LTR40b LTR ERVL 1 199 -263 1762 179 3 3 chr6 118518986 118519277 -70760277 - AluJb SINE Alu -18 294 4 895 230 92 99 chr6 118519277 118519394 -70760160 + LTR40b LTR ERVL 199 315 -147 1909 104 19 11 chr6 118519394 118519663 -70759891 + AluSx SINE Alu 37 307 -5 2361 94 0 0 chr6 118519668 118519967 -70759587 + AluSg SINE Alu 1 299 -11 2392 96 0 3 chr6 118519976 118520289 -70759265 + AluSx SINE Alu 1 312 0 895 230 92 99 chr6 118520289 118520421 -70759133 + LTR40b LTR ERVL 327 462 0 2430 229 92 28 chr6 118520421 118520801 -70758753 - L1ME2 LINE L1 -270 5894 5435 2238 93 17 0 chr6 118520801 118521101 -70758453 - AluSp SINE Alu -8 305 1 2430 229 92 28 chr6 118521101 118521227 -70758327 - L1ME2 LINE L1 -729 5435 5318 1868 144 53 3 chr6 118521246 118521530 -70758024 + AluJb SINE Alu 1 298 -14 1682 247 165 29 chr6 118521613 118521941 -70757613 - L1MEc LINE L1 -2756 3459 3177 1421 215 7 39 chr6 118521941 118522116 -70757438 - AluJb SINE Alu -15 297 135 2253 95 3 10 chr6 118522116 118522412 -70757142 - AluSq SINE Alu -19 294 1 1421 215 7 39 chr6 118522412 118522543 -70757011 - AluJb SINE Alu -177 135 1 222 37 0 0 chr6 118522550 118522577 -70756977 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1682 247 165 29 chr6 118522577 118523499 -70756055 - L1MEc LINE L1 -3043 3172 2065 689 263 81 5 chr6 118523503 118523712 -70755842 + MER106A DNA MER1_type 1 225 -11 201 321 60 12 chr6 118524264 118524348 -70755206 + MIR SINE MIR 8 95 -167 250 378 56 85 chr6 118524452 118524565 -70754989 - L2 LINE L2 -14 3258 3143 1580 180 3 53 chr6 118524565 118524888 -70754666 + AluJb SINE Alu 1 307 -5 250 378 56 85 chr6 118524888 118525115 -70754439 - L2 LINE L2 -129 3143 2928 410 217 49 84 chr6 118525231 118525374 -70754180 - MIR SINE MIR -14 248 111 2013 124 3 7 chr6 118525389 118525696 -70753858 + L1PA16 LINE L1 5852 6157 -9 1651 149 7 57 chr6 118525796 118526097 -70753457 + AluJo SINE Alu 16 301 -11 2178 96 0 7 chr6 118526724 118527034 -70752520 - AluSq SINE Alu 0 312 5 404 352 96 52 chr6 118527305 118527689 -70751865 - HAL1 LINE L1 -2106 401 1 808 227 18 0 chr6 118527902 118528065 -70751489 - FRAM SINE Alu 0 166 1 1245 162 110 26 chr6 118528135 118528407 -70751147 - AluJo SINE Alu -15 297 3 21 36 0 0 chr6 118528417 118528445 -70751109 + AT_rich Low_complexity Low_complexity 1 28 0 3722 137 102 29 chr6 118528472 118528538 -70751016 - L1PB4 LINE L1 -129 6027 5967 2512 65 0 10 chr6 118528538 118528845 -70750709 - AluY SINE Alu -7 304 1 3722 137 102 29 chr6 118528845 118529654 -70749900 - L1PB4 LINE L1 -189 5967 5100 3488 126 62 29 chr6 118530044 118530661 -70748893 - MER39B LTR ERV1 -16 637 1 600 46 84 16 chr6 118531001 118531451 -70748103 + (TA)n Simple_repeat Simple_repeat 1 480 0 2144 106 0 31 chr6 118531760 118532082 -70747472 - AluSx SINE Alu 0 312 1 21 36 0 0 chr6 118532330 118532358 -70747196 + AT_rich Low_complexity Low_complexity 1 28 0 270 270 112 0 chr6 118532765 118532854 -70746700 + MER103 DNA DNA 67 165 -1 521 207 81 0 chr6 118533439 118533550 -70746004 + FLAM_A SINE Alu 14 133 -9 393 241 148 47 chr6 118533577 118533921 -70745633 - L1ME4a LINE L1 -214 5907 5529 579 277 122 36 chr6 118534712 118535325 -70744229 - L1ME4a LINE L1 -198 5923 5258 25 90 0 0 chr6 118535340 118535407 -70744147 + AT_rich Low_complexity Low_complexity 1 67 0 21 95 0 0 chr6 118535490 118535553 -70744001 + AT_rich Low_complexity Low_complexity 1 63 0 5058 264 123 23 chr6 118535963 118537797 -70741757 - L2 LINE L2 -436 2878 862 444 305 71 10 chr6 118537825 118538022 -70741532 - Tigger8 DNA MER2_type -258 408 200 2007 115 33 3 chr6 118538375 118538679 -70740875 - AluSq SINE Alu 0 313 1 186 103 0 0 chr6 118538732 118538761 -70740793 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 429 159 57 0 chr6 118538847 118538935 -70740619 - L1MC4a LINE L1 -558 7250 7158 847 185 31 10 chr6 118538939 118539148 -70740406 - L1MC4 LINE L1 -813 7080 6778 21 36 0 0 chr6 118539267 118539295 -70740259 + AT_rich Low_complexity Low_complexity 1 28 0 2107 91 0 7 chr6 118539315 118539591 -70739963 - AluY SINE Alu -3 308 35 2867 252 50 16 chr6 118539613 118540233 -70739321 - L1ME1 LINE L1 -50 6116 5519 1574 200 17 0 chr6 118540233 118540523 -70739031 + AluJb SINE Alu 1 295 -17 2867 252 50 16 chr6 118540523 118541005 -70738549 - L1ME1 LINE L1 -647 5519 4873 30 27 0 0 chr6 118541713 118541750 -70737804 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 118543469 118543492 -70736062 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr6 118544506 118544529 -70735025 + AT_rich Low_complexity Low_complexity 1 23 0 315 191 0 0 chr6 118545241 118545309 -70734245 + C-rich Low_complexity Low_complexity 4 71 0 1905 145 10 3 chr6 118545311 118545601 -70733953 - AluJb SINE Alu -20 292 1 23 33 0 0 chr6 118545666 118545696 -70733858 + AT_rich Low_complexity Low_complexity 1 30 0 345 302 144 10 chr6 118545696 118545898 -70733656 + L1MC/D LINE L1 4911 5139 -1007 979 226 96 45 chr6 118545920 118546450 -70733104 - MLT2E LTR ERVL -2 626 19 287 305 149 0 chr6 118546637 118546778 -70732776 + L1MC/D LINE L1 5427 5588 -578 794 216 53 22 chr6 118546831 118547058 -70732496 - MER112 DNA MER1_type -6 254 21 274 241 108 8 chr6 118547064 118547212 -70732342 + L1MC/D LINE L1 5671 5837 -333 534 266 75 26 chr6 118547699 118548004 -70731550 - L1ME1 LINE L1 -2015 4131 3812 434 276 72 61 chr6 118548537 118548690 -70730864 - L1ME1 LINE L1 -2685 3461 3311 1887 154 3 13 chr6 118548690 118549002 -70730552 - AluJb SINE Alu -3 309 1 434 276 72 61 chr6 118549002 118549239 -70730315 - L1ME1 LINE L1 -2835 3311 3067 456 193 111 94 chr6 118549488 118549669 -70729885 + MER5A DNA MER1_type 2 185 -4 262 115 23 4 chr6 118550935 118551152 -70728402 + AluSx SINE Alu 1 302 0 1650 147 15 61 chr6 118551364 118551690 -70727864 - AluJb SINE Alu -1 311 1 731 142 8 0 chr6 118552500 118552620 -70726934 - L1PB3 LINE L1 -2 6152 6032 691 228 0 0 chr6 118552678 118552801 -70726753 + FLAM_A SINE Alu 3 125 -8 24 32 0 0 chr6 118553008 118553039 -70726515 + AT_rich Low_complexity Low_complexity 1 31 0 604 125 0 133 chr6 118553039 118553075 -70726479 - U6 snRNA snRNA -3 104 65 2164 123 3 3 chr6 118553075 118553376 -70726178 - AluSx SINE Alu -11 301 1 604 125 0 133 chr6 118553376 118553459 -70726095 - U6 snRNA snRNA -42 65 1 28906 41 4 2 chr6 118553810 118558111 -70721443 - L1PA5 LINE L1 -3 6151 1836 2869 22 0 0 chr6 118558111 118558428 -70721126 + AluYb8 SINE Alu 1 317 -1 28906 41 4 2 chr6 118558428 118558512 -70721042 - L1PA5 LINE L1 -4318 1836 1754 733 183 8 0 chr6 118558723 118558854 -70720700 + FLAM_C SINE Alu 1 132 -1 2407 92 0 0 chr6 118558949 118559254 -70720300 + AluSg SINE Alu 1 305 -5 310 275 209 0 chr6 118559387 118559478 -70720076 + L2 LINE L2 3195 3304 -9 1431 299 48 21 chr6 118559532 118560072 -70719482 - L2 LINE L2 0 3313 2755 1572 216 81 9 chr6 118560072 118560405 -70719149 - MSTD LTR MaLR 0 396 40 3094 232 81 26 chr6 118560436 118561173 -70718381 - L1MEd LINE L1 -2752 3674 2979 279 0 0 0 chr6 118561173 118561204 -70718350 + (TG)n Simple_repeat Simple_repeat 1 31 0 3094 232 81 26 chr6 118561204 118561489 -70718065 - L1MEd LINE L1 -3447 2979 2711 360 43 0 0 chr6 118561489 118561535 -70718019 + (TG)n Simple_repeat Simple_repeat 2 47 0 1992 114 0 37 chr6 118561536 118561834 -70717720 - AluSq SINE Alu -26 287 1 3094 232 81 26 chr6 118561834 118562094 -70717460 - L1MEd LINE L1 -3714 2712 2356 344 225 7 78 chr6 118562110 118562252 -70717302 - L1MEd LINE L1 -4402 2205 2074 529 297 21 10 chr6 118562309 118562501 -70717053 + HERVL40 LTR ERVL 4445 4638 -892 557 137 0 21 chr6 118562512 118562607 -70716947 - GSATX Satellite centromeric -62 156 64 482 258 53 74 chr6 118562694 118563122 -70716432 - L1MEd LINE L1 -4754 1672 1223 426 264 42 94 chr6 118563379 118563578 -70715976 - L1ME LINE L1 -5066 1139 931 1462 154 59 29 chr6 118563578 118563851 -70715703 - AluJb SINE Alu -31 281 1 426 264 42 94 chr6 118563851 118564151 -70715403 - L1ME LINE L1 -5274 931 666 322 304 63 72 chr6 118564512 118564842 -70714712 - L1ME LINE L1 -5859 346 74 486 234 90 8 chr6 118565432 118565676 -70713878 + MER20B DNA MER1_type 514 777 -6 860 315 59 56 chr6 118565696 118566522 -70713032 - L1MEd LINE L1 -5287 918 90 256 349 63 61 chr6 118566894 118567272 -70712282 + L2 LINE L2 1903 2281 -1033 2389 85 3 0 chr6 118567698 118567993 -70711561 - AluSp SINE Alu -17 296 1 886 202 0 6 chr6 118568046 118568219 -70711335 - FRAM SINE Alu -4 172 1 217 350 62 0 chr6 118568802 118568882 -70710672 - L2 LINE L2 -1253 2061 1977 180 238 88 50 chr6 118569519 118569599 -70709955 - MIR SINE MIR -124 138 56 23 54 0 0 chr6 118569684 118569721 -70709833 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr6 118569876 118569912 -70709642 + AT_rich Low_complexity Low_complexity 1 36 0 274 146 36 0 chr6 118569932 118569987 -70709567 - MER66A LTR ERV1 -138 340 284 3337 186 142 36 chr6 118570193 118571173 -70708381 - Looper DNA T2_type -7 1551 448 1936 103 0 8 chr6 118571173 118571426 -70708128 + AluSx SINE Alu 32 282 -30 3337 186 142 36 chr6 118571426 118571507 -70708047 - Looper DNA T2_type -1110 448 377 562 220 18 0 chr6 118571526 118571635 -70707919 + FAM SINE Alu 53 163 -22 41 21 0 0 chr6 118571670 118571718 -70707836 + AT_rich Low_complexity Low_complexity 1 48 0 279 209 0 0 chr6 118571733 118571800 -70707754 - Looper DNA T2_type -1257 301 235 1528 205 80 15 chr6 118571937 118572337 -70707217 - LTR37A LTR ERV1 0 426 1 1947 124 0 21 chr6 118573687 118573969 -70705585 + AluJo SINE Alu 13 288 -24 184 132 94 57 chr6 118576472 118576525 -70703029 + MIR SINE MIR 145 199 -63 2177 129 0 3 chr6 118576725 118577036 -70702518 + AluSx SINE Alu 1 310 -2 1376 143 162 23 chr6 118577234 118577493 -70702061 + AluJb SINE Alu 2 296 -16 233 238 24 0 chr6 118577724 118577808 -70701746 + CT-rich Low_complexity Low_complexity 4 89 0 724 240 13 13 chr6 118577922 118578072 -70701482 - MER5B DNA MER1_type -2 176 27 1428 186 61 4 chr6 118578254 118578383 -70701171 + AluJb SINE Alu 1 121 -191 441 0 0 0 chr6 118578383 118578432 -70701122 + (CA)n Simple_repeat Simple_repeat 1 49 0 1428 186 61 4 chr6 118578432 118578581 -70700973 + AluJb SINE Alu 121 295 -17 216 0 0 0 chr6 118578662 118578686 -70700868 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 2024 128 0 11 chr6 118578687 118578968 -70700586 - AluSg SINE Alu -32 278 1 315 289 0 0 chr6 118579053 118579143 -70700411 - L1MC4a LINE L1 -1904 5904 5815 540 314 14 14 chr6 118579279 118579486 -70700068 - L1MC4a LINE L1 -2074 5734 5528 210 37 0 0 chr6 118579873 118579900 -70699654 + (TG)n Simple_repeat Simple_repeat 2 28 0 386 279 7 27 chr6 118580046 118580193 -70699361 + MIR SINE MIR 119 262 0 2456 61 0 3 chr6 118581993 118582288 -70697266 - AluY SINE Alu -17 294 1 2017 148 0 6 chr6 118582487 118582798 -70696756 - AluSx SINE Alu -3 309 1 2170 101 10 7 chr6 118584397 118584695 -70694859 - AluSc SINE Alu -10 299 1 2097 109 18 0 chr6 118584738 118585021 -70694533 + AluSx SINE Alu 1 288 -24 347 137 84 0 chr6 118591696 118591745 -70687809 - L1MB2 LINE L1 -2 6169 6126 1602 192 14 14 chr6 118591745 118592037 -70687517 - AluJo SINE Alu -20 292 1 347 137 84 0 chr6 118592037 118592082 -70687472 - L1MB2 LINE L1 -45 6126 6067 1745 138 6 72 chr6 118592227 118592547 -70687007 - AluJb SINE Alu -13 299 1 760 176 30 0 chr6 118592547 118592678 -70686876 - AluJb SINE Alu -177 135 1 272 187 93 27 chr6 118592688 118592763 -70686791 - L1ME4a LINE L1 -69 6052 5973 405 70 0 0 chr6 118592764 118592821 -70686733 + (CA)n Simple_repeat Simple_repeat 2 58 0 1705 129 86 11 chr6 118592830 118593110 -70686444 - AluSx SINE Alu -11 301 1 279 0 0 0 chr6 118593568 118593599 -70685955 + (TC)n Simple_repeat Simple_repeat 1 31 0 * 441 0 0 0 chr6 118593598 118593647 -70685907 + (CA)n Simple_repeat Simple_repeat 1 49 0 2132 129 6 3 chr6 118594196 118594507 -70685047 - AluSx SINE Alu 0 312 1 898 80 0 0 chr6 118595139 118595251 -70684303 + L1MA2 LINE L1 6193 6304 0 1554 174 40 20 chr6 118595945 118596054 -70683500 + AluJo SINE Alu 3 108 -204 2474 133 28 17 chr6 118596054 118596414 -70683140 + THE1B LTR MaLR 1 364 0 1554 174 40 20 chr6 118596414 118596608 -70682946 + AluJo SINE Alu 108 312 0 189 180 124 90 chr6 118596933 118597022 -70682532 - MIR SINE MIR -73 189 98 2322 95 0 0 chr6 118597319 118597614 -70681940 - AluSg SINE Alu -15 295 1 2141 101 20 10 chr6 118597616 118597913 -70681641 - AluSq SINE Alu -13 300 1 305 169 31 0 chr6 118598037 118598102 -70681452 + MER5B DNA MER1_type 1 67 -111 188 219 49 0 chr6 118598416 118598457 -70681097 + MER5A DNA MER1_type 2 44 -145 1383 151 0 0 chr6 118598457 118598669 -70680885 + AluJb SINE Alu 85 296 -16 702 244 151 58 chr6 118598689 118599000 -70680554 - MER87 LTR ERV1 -201 340 1 203 239 0 60 chr6 118599332 118599399 -70680155 - L2 LINE L2 -13 3259 3197 189 247 143 13 chr6 118599379 118599456 -70680098 - MIR SINE MIR -125 137 51 * 532 238 160 21 chr6 118599822 118600041 -70679513 + MIR SINE MIR 6 253 -9 1838 147 0 42 chr6 118600188 118600500 -70679054 - AluJb SINE Alu -13 299 1 1923 152 3 3 chr6 118601150 118601459 -70678095 + AluJb SINE Alu 1 309 -3 1343 166 0 18 chr6 118601612 118601841 -70677713 + AluJo SINE Alu 75 299 -13 240 273 13 13 chr6 118601896 118601973 -70677581 + MIR SINE MIR 72 148 -114 203 350 111 18 chr6 118602293 118602519 -70677035 - L2 LINE L2 -490 2824 2578 1722 157 63 178 chr6 118602538 118602847 -70676707 - Charlie1 DNA MER1_type -141 2620 2442 1801 153 45 3 chr6 118602847 118603135 -70676419 - AluSx SINE Alu -12 300 1 1722 157 63 178 chr6 118603135 118603557 -70675997 - Charlie1 DNA MER1_type -319 2442 1973 429 284 123 26 chr6 118603569 118603837 -70675717 + L2 LINE L2 2236 2529 -785 1867 159 21 0 chr6 118606666 118606949 -70672605 - AluJb SINE Alu -23 289 1 2422 74 0 3 chr6 118608018 118608314 -70671240 + AluY SINE Alu 1 295 -16 492 174 0 0 chr6 118608317 118608409 -70671145 + (TATG)n Simple_repeat Simple_repeat 1 92 0 213 388 0 0 chr6 118609676 118609743 -70669811 - L2 LINE L2 -1 3312 3246 640 304 83 0 chr6 118610315 118610555 -70668999 + MIR SINE MIR 3 262 0 807 220 28 17 chr6 118610906 118611083 -70668471 + MIR SINE MIR 77 255 -7 2838 103 25 27 chr6 118614605 118615043 -70664511 - L1MA3 LINE L1 -5 6300 5864 325 269 28 41 chr6 118615992 118616137 -70663417 + HAL1 LINE L1 1775 1917 -590 273 285 114 0 chr6 118616636 118616759 -70662795 + HAL1b LINE L1 746 882 -466 1610 159 35 17 chr6 118616759 118617048 -70662506 - AluJb SINE Alu -18 294 1 1694 137 0 85 chr6 118617266 118617573 -70661981 + AluJb SINE Alu 21 301 -11 284 200 46 0 chr6 118617924 118617959 -70661595 + MIR SINE MIR 125 162 -100 228 273 91 104 chr6 118617959 118618113 -70661441 + MIR3 SINE MIR 1 152 -56 1806 165 0 7 chr6 118618479 118618776 -70660778 - AluJo SINE Alu -17 295 1 311 229 85 17 chr6 118619711 118619829 -70659725 + L1MC5 LINE L1 7312 7437 -524 489 217 175 6 chr6 118619834 118619976 -70659578 + MER5A DNA MER1_type 6 175 -14 199 291 39 71 chr6 118620504 118620631 -70658923 + MIR SINE MIR 85 207 -55 1936 159 3 3 chr6 118620714 118621022 -70658532 - AluJb SINE Alu -4 308 1 253 276 78 43 chr6 118621023 118621139 -70658415 + MIR SINE MIR 23 142 -120 338 290 47 57 chr6 118621244 118621437 -70658117 + MLT1I LTR MaLR 82 272 -137 579 232 78 0 chr6 118621494 118621636 -70657918 - AluJb SINE Alu -54 258 106 537 187 0 104 chr6 118621631 118621765 -70657789 + AluJo/FRAM SINE Alu 192 311 -1 * 1597 157 105 81 chr6 118621780 118622189 -70657365 + MER34 LTR ERV1 124 542 0 2246 49 0 8 chr6 118622883 118623147 -70656407 - AluY SINE Alu -18 293 32 476 100 0 0 chr6 118623147 118623207 -70656347 - Alu SINE Alu -252 61 2 182 319 69 0 chr6 118623700 118623772 -70655782 + MIR SINE MIR 186 262 0 201 336 197 0 chr6 118625508 118625630 -70653924 + L2 LINE L2 3125 3270 -2 1074 147 0 103 chr6 118625648 118625880 -70653674 + AluJb SINE Alu 95 302 -10 566 300 58 9 chr6 118626258 118626481 -70653073 - L2 LINE L2 0 3313 3080 1956 142 3 7 chr6 118626692 118626995 -70652559 + AluSx SINE Alu 1 302 -10 210 95 0 95 chr6 118627179 118627221 -70652333 - L2 LINE L2 -104 3209 3172 2907 6 0 0 chr6 118627768 118628079 -70651475 + AluYa5 SINE Alu 1 311 0 2234 111 0 7 chr6 118629053 118629359 -70650195 - AluSx SINE Alu -8 304 1 2424 69 26 0 chr6 118631180 118631483 -70648071 - AluY SINE Alu 0 311 1 2532 75 0 0 chr6 118631893 118632201 -70647353 + AluY SINE Alu 1 308 -3 394 222 12 0 chr6 118632701 118632782 -70646772 + MER94 DNA DNA 5 86 -48 811 186 39 13 chr6 118633583 118633739 -70645815 + AluJo SINE Alu 11 170 -142 2257 95 3 7 chr6 118633744 118634049 -70645505 + AluSq SINE Alu 10 313 0 237 132 0 0 chr6 118634054 118634092 -70645462 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 988 144 14 0 chr6 118634098 118634244 -70645310 + AluJo SINE Alu 157 304 -8 1720 151 63 0 chr6 118635243 118635528 -70644026 - AluJo SINE Alu -9 303 1 2111 127 7 7 chr6 118635545 118635852 -70643702 - AluSx SINE Alu -5 307 1 209 282 13 39 chr6 118635874 118635952 -70643602 - L2 LINE L2 -3 3310 3235 733 273 53 77 chr6 118636051 118636351 -70643203 + MLT1I LTR MaLR 99 391 -18 23 0 0 0 chr6 118637147 118637170 -70642384 + AT_rich Low_complexity Low_complexity 1 23 0 543 198 0 0 chr6 118637380 118637476 -70642078 - Tigger7 DNA MER2_type 0 2487 2392 1201 237 72 0 chr6 118637477 118637726 -70641828 - Tigger7 DNA MER2_type -2220 267 1 440 246 179 65 chr6 118637810 118638317 -70641237 - L1ME4a LINE L1 -22 6099 5535 1387 171 115 25 chr6 118638347 118638633 -70640921 - MER7A DNA MER2_type -1 345 36 23 0 0 0 chr6 118639078 118639101 -70640453 + AT_rich Low_complexity Low_complexity 1 23 0 258 326 16 114 chr6 118639119 118639231 -70640323 + MIR3 SINE MIR 22 109 -99 1602 181 76 0 chr6 118639231 118639508 -70640046 - AluJb SINE Alu -14 298 1 258 326 16 114 chr6 118639508 118639588 -70639966 + MIR3 SINE MIR 109 195 -13 2267 110 3 0 chr6 118639759 118640058 -70639496 - AluSx SINE Alu -12 300 1 242 338 78 14 chr6 118640124 118640266 -70639288 + L2 LINE L2 2945 3095 -177 838 266 38 8 chr6 118640650 118640887 -70638667 - MIR SINE MIR 0 262 19 216 233 167 22 chr6 118641549 118641639 -70637915 + MIR SINE MIR 120 222 -40 219 219 61 0 chr6 118641929 118642011 -70637543 + (CATA)n Simple_repeat Simple_repeat 1 87 0 195 114 0 0 chr6 118643520 118643555 -70635999 + (TA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr6 118644581 118644609 -70634945 + GC_rich Low_complexity Low_complexity 1 28 0 42 20 0 0 chr6 118645018 118645067 -70634487 + GC_rich Low_complexity Low_complexity 1 49 0 724 283 40 14 chr6 118645980 118646120 -70633434 + MIR SINE MIR 4 154 -108 309 89 0 0 chr6 118646120 118646165 -70633389 + (ATG)n Simple_repeat Simple_repeat 2 46 0 724 283 40 14 chr6 118646165 118646247 -70633307 + MIR SINE MIR 154 232 -30 1127 87 27 0 chr6 118646377 118646527 -70633027 - AluSp SINE Alu -20 293 140 447 242 50 0 chr6 118646583 118646703 -70632851 + L1ME LINE L1 5670 5795 -326 209 296 0 0 chr6 118646714 118646768 -70632786 + MIR SINE MIR 20 73 -189 1316 168 164 7 chr6 118646889 118647175 -70632379 + MER58B DNA MER1_type 10 340 -1 1681 136 44 0 chr6 118647919 118648170 -70631384 + AluSx SINE Alu 39 300 -12 2206 167 131 7 chr6 118648428 118648878 -70630676 - L1MC2 LINE L1 0 6344 5839 9566 169 54 12 chr6 118648889 118650380 -70629174 - L1MA9 LINE L1 -72 6240 4813 1947 122 0 14 chr6 118650380 118650698 -70628856 - AluSx SINE Alu 0 314 1 9566 169 54 12 chr6 118650698 118651281 -70628273 - L1MA9 LINE L1 -1499 4813 4256 1572 209 6 19 chr6 118651281 118651596 -70627958 - AluJo SINE Alu -1 311 1 9566 169 54 12 chr6 118651596 118652363 -70627191 - L1MA9 LINE L1 -2056 4256 3285 1827 143 96 44 chr6 118652344 118652728 -70626826 - L1MC2 LINE L1 -491 5853 5450 * 1571 177 53 17 chr6 118653022 118653321 -70626233 + AluJb SINE Alu 1 310 -2 2373 93 3 0 chr6 118653339 118653639 -70625915 + AluSc SINE Alu 1 301 -8 234 332 67 34 chr6 118653714 118653922 -70625632 + MIR SINE MIR 20 234 -28 1931 81 0 0 chr6 118654237 118654473 -70625081 + AluY SINE Alu 56 291 -20 22 35 0 0 chr6 118654686 118654715 -70624839 + AT_rich Low_complexity Low_complexity 1 29 0 2325 96 7 0 chr6 118655332 118655633 -70623921 + AluSx SINE Alu 1 303 -9 244 411 31 16 chr6 118656763 118656892 -70622662 + L2 LINE L2 3123 3253 -19 1154 171 30 26 chr6 118657530 118657764 -70621790 + AluJo SINE Alu 73 307 -5 6200 134 30 12 chr6 118657815 118658889 -70620665 - L1MA4 LINE L1 -6 6294 5202 1382 118 25 0 chr6 118658993 118659197 -70620357 + MER2 DNA MER2_type 2 210 -135 337 219 0 0 chr6 118659319 118659383 -70620171 + MER2 DNA MER2_type 282 345 0 1938 121 136 18 chr6 118659430 118659760 -70619794 + MER93b LTR ERV1 5 373 0 990 163 0 51 chr6 118660049 118660227 -70619327 + AluSg/x SINE Alu 121 289 -21 266 289 8 86 chr6 118660239 118660367 -70619187 - L2 LINE L2 -1 3312 3195 22 80 0 0 chr6 118661347 118661397 -70618157 + AT_rich Low_complexity Low_complexity 1 50 0 777 186 0 0 chr6 118662673 118662802 -70616752 + MER45A DNA AcHobo 2 130 -48 25 0 0 0 chr6 118662950 118662975 -70616579 + AT_rich Low_complexity Low_complexity 1 25 0 2937 243 142 8 chr6 118663852 118664788 -70614766 + L2 LINE L2 1342 2402 -912 1209 266 97 15 chr6 118664790 118665368 -70614186 + L2 LINE L2 2665 3305 -8 24 32 0 0 chr6 118667116 118667147 -70612407 + AT_rich Low_complexity Low_complexity 1 31 0 348 138 46 0 chr6 118667847 118667912 -70611642 + L1ME3A LINE L1 6094 6161 -9 2208 105 7 7 chr6 118668000 118668305 -70611249 - AluSx SINE Alu -7 305 1 1812 134 0 28 chr6 118668383 118668674 -70610880 - AluSx SINE Alu -11 301 19 254 178 0 22 chr6 118668674 118668710 -70610844 - Alu SINE Alu -265 37 1 1776 147 7 14 chr6 118670241 118670527 -70609027 + AluSx SINE Alu 1 284 -28 388 211 63 11 chr6 118670541 118670636 -70608918 + MER5A DNA MER1_type 66 165 -24 353 253 53 73 chr6 118670633 118670783 -70608771 - MIR SINE MIR -61 201 55 * 235 291 36 36 chr6 118672813 118672923 -70606631 - MIR SINE MIR -97 165 56 449 261 190 0 chr6 118673710 118673894 -70605660 - MIR SINE MIR -11 251 33 366 261 217 14 chr6 118673877 118674015 -70605539 + MIR3 SINE MIR 41 206 -2 * 423 266 9 18 chr6 118674105 118674218 -70605336 - MER5B DNA MER1_type -60 118 7 243 0 0 0 chr6 118674660 118674687 -70604867 + (TG)n Simple_repeat Simple_repeat 2 28 0 28 29 0 0 chr6 118674724 118674759 -70604795 + AT_rich Low_complexity Low_complexity 1 35 0 722 168 168 5 chr6 118675218 118675256 -70604298 + Charlie5 DNA MER1_type 2397 2427 -197 2285 120 0 0 chr6 118675256 118675564 -70603990 + AluSx SINE Alu 1 308 -4 722 168 168 5 chr6 118675564 118675721 -70603833 + Charlie5 DNA MER1_type 2427 2624 0 1747 221 78 77 chr6 118676340 118676927 -70602627 + MLT1E LTR MaLR 2 589 -4 409 303 56 7 chr6 118677534 118677676 -70601878 - MIR SINE MIR -100 162 14 1915 146 0 7 chr6 118679178 118679465 -70600089 + AluJo SINE Alu 1 285 -27 35 0 0 0 chr6 118679465 118679500 -70600054 + AT_rich Low_complexity Low_complexity 1 35 0 209 161 0 0 chr6 118679500 118679531 -70600023 - L2 LINE L2 -96 3217 3187 863 181 0 0 chr6 118679642 118679775 -70599779 - FLAM_C SINE Alu 0 133 1 7998 29 0 3 chr6 118679804 118680834 -70598720 + L1PA4 LINE L1 5122 6148 -7 247 300 50 50 chr6 118681250 118681390 -70598164 - MIR SINE MIR 0 262 123 938 253 50 63 chr6 118681516 118681842 -70597712 + HAL1b LINE L1 77 397 -951 2162 104 14 3 chr6 118681842 118682130 -70597424 - AluSq SINE Alu -22 291 1 938 253 50 63 chr6 118682130 118682266 -70597288 + HAL1b LINE L1 397 533 -815 291 175 254 0 chr6 118682266 118682329 -70597225 - Tigger5 DNA MER2_type 0 2323 2245 233 244 13 77 chr6 118682322 118682400 -70597154 + Tigger5 DNA MER2_type 2242 2314 -9 * 462 200 0 12 chr6 118682402 118682482 -70597072 - Tigger5 DNA MER2_type -2244 79 1 1157 227 141 54 chr6 118682483 118682678 -70596876 + HAL1b LINE L1 536 713 -635 2241 103 0 0 chr6 118682678 118682970 -70596584 + AluSg SINE Alu 1 292 -18 1157 227 141 54 chr6 118682970 118683048 -70596506 + HAL1b LINE L1 713 783 -565 1709 185 3 7 chr6 118683048 118683350 -70596204 + AluJb SINE Alu 1 301 -11 2202 122 3 3 chr6 118683352 118683664 -70595890 + AluSx SINE Alu 1 312 0 1157 227 141 54 chr6 118683664 118683941 -70595613 + HAL1b LINE L1 783 1138 -210 918 259 138 14 chr6 118683941 118684288 -70595266 - MER57A LTR ERV1 0 403 14 243 246 37 60 chr6 118684309 118684356 -70595198 + HAL1b LINE L1 1135 1182 -166 2353 78 0 7 chr6 118684356 118684650 -70594904 - AluSx SINE Alu -20 292 1 243 246 37 60 chr6 118684650 118684736 -70594818 + HAL1b LINE L1 1182 1265 -83 27 29 0 0 chr6 118684825 118684859 -70594695 + AT_rich Low_complexity Low_complexity 1 34 0 367 188 4 42 chr6 118685148 118685254 -70594300 - L1MC5 LINE L1 -1 8041 7832 221 304 123 14 chr6 118685345 118685483 -70594071 - MIR SINE MIR -3 259 107 423 0 0 0 chr6 118686355 118686402 -70593152 + (CA)n Simple_repeat Simple_repeat 2 48 0 222 307 80 0 chr6 118686413 118686488 -70593066 - MIR3 SINE MIR -13 195 115 308 271 100 52 chr6 118687734 118687944 -70591610 - L1M2 LINE L1 -5854 995 776 928 159 31 6 chr6 118688185 118688348 -70591206 - AluJb SINE Alu -13 299 133 470 241 21 3 chr6 118689424 118689547 -70590007 - LTR43 LTR ERV1 -214 465 189 1732 239 49 33 chr6 118689768 118690257 -70589297 + MLT1E LTR MaLR 8 504 -89 398 290 96 77 chr6 118690504 118690629 -70588925 - L1MC4a LINE L1 -275 5891 5770 4040 83 89 7 chr6 118690629 118691216 -70588338 - LTR24C LTR ERV1 0 635 1 398 290 96 77 chr6 118691216 118691254 -70588300 - L1MC4a LINE L1 -396 5770 5734 2180 134 0 10 chr6 118691254 118691567 -70587987 - AluSx SINE Alu -2 310 1 398 290 96 77 chr6 118691567 118691835 -70587719 - L1MC4a LINE L1 -432 5734 5456 298 280 0 48 chr6 118691848 118691973 -70587581 + CT-rich Low_complexity Low_complexity 2 120 0 49 43 0 0 chr6 118691979 118692049 -70587505 + AT_rich Low_complexity Low_complexity 1 70 0 4923 167 38 0 chr6 118692163 118693069 -70586485 - L1MB5 LINE L1 -6 6168 5232 2047 109 48 0 chr6 118693071 118693365 -70586189 + AluSq SINE Alu 1 308 -5 216 281 20 16 chr6 118693548 118693728 -70585826 + GA-rich Low_complexity Low_complexity 3 253 0 243 164 0 66 chr6 118693851 118693912 -70585642 - AluJ/FLAM SINE Alu -245 57 1 2243 184 46 104 chr6 118693920 118694351 -70585203 - L1MB5 LINE L1 -978 5168 4803 2190 99 0 23 chr6 118694351 118694654 -70584900 - AluSx SINE Alu -16 296 1 2243 184 46 104 chr6 118694654 118695023 -70584531 - L1MB5 LINE L1 -1343 4803 4414 1657 188 13 23 chr6 118695536 118695845 -70583709 + AluJb SINE Alu 1 306 -6 24 0 0 0 chr6 118696761 118696785 -70582769 + AT_rich Low_complexity Low_complexity 1 24 0 221 123 140 0 chr6 118697270 118697327 -70582227 + MIR3 SINE MIR 111 175 -33 304 251 55 129 chr6 118697862 118697954 -70581600 + MIR SINE MIR 64 140 -122 2265 99 0 0 chr6 118697954 118698238 -70581316 + AluSc SINE Alu 1 284 -25 304 251 55 129 chr6 118698238 118698308 -70581246 + MIR SINE MIR 140 214 -48 783 259 57 13 chr6 118698938 118699166 -70580388 - MIR SINE MIR -23 239 2 508 113 0 25 chr6 118699273 118699353 -70580201 - MADE1 DNA Mariner 0 80 3 1036 170 0 0 chr6 118699845 118700010 -70579544 + MER75 DNA T2_type 2 166 -348 2125 100 41 3 chr6 118700012 118700303 -70579251 - AluSx SINE Alu -10 302 1 922 80 0 0 chr6 118700303 118700416 -70579138 - AluSq/x SINE Alu -177 135 23 2631 70 53 0 chr6 118700417 118700759 -70578795 + MER75 DNA T2_type 155 514 0 219 333 22 44 chr6 118700796 118700931 -70578623 - MIR SINE MIR -129 133 2 2435 134 27 61 chr6 118701179 118701620 -70577934 + MSTB LTR MaLR 1 426 0 1658 189 20 0 chr6 118703266 118703562 -70575992 + AluJo SINE Alu 1 302 -10 15730 116 40 28 chr6 118703631 118703685 -70575869 + Tigger1 DNA MER2_type 1 53 -2365 1838 127 57 25 chr6 118703685 118703968 -70575586 - AluSx SINE Alu -20 292 1 15730 116 40 28 chr6 118703968 118704442 -70575112 + Tigger1 DNA MER2_type 53 520 -1898 1932 123 11 3 chr6 118704442 118704726 -70574828 + AluSc SINE Alu 1 286 -23 15730 116 40 28 chr6 118704726 118705006 -70574548 + Tigger1 DNA MER2_type 520 795 -1623 2396 73 0 16 chr6 118705006 118705321 -70574233 + AluY SINE Alu 2 311 0 15730 116 40 28 chr6 118705321 118705938 -70573616 + Tigger1 DNA MER2_type 795 1403 -1015 1852 95 0 0 chr6 118705938 118706170 -70573384 + AluSc SINE Alu 77 308 -1 15730 116 40 28 chr6 118706170 118706289 -70573265 + Tigger1 DNA MER2_type 1403 1519 -899 2054 116 0 70 chr6 118706289 118706617 -70572937 + AluSx SINE Alu 1 305 -7 15730 116 40 28 chr6 118706617 118706999 -70572555 + Tigger1 DNA MER2_type 1519 1895 -523 2338 81 7 0 chr6 118706999 118707295 -70572259 - AluSx SINE Alu -14 298 1 15730 116 40 28 chr6 118707295 118707752 -70571802 + Tigger1 DNA MER2_type 1895 2418 0 189 107 0 0 chr6 118708129 118708157 -70571397 + (A)n Simple_repeat Simple_repeat 1 28 0 189 74 0 0 chr6 118708757 118708784 -70570770 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1592 149 78 19 chr6 118708787 118709055 -70570499 - AluJo SINE Alu -28 284 1 2252 121 0 7 chr6 118709066 118709373 -70570181 - AluSx SINE Alu -7 305 1 291 200 38 50 chr6 118709479 118709559 -70569995 - L1MC5 LINE L1 -48 7913 7835 248 211 118 0 chr6 118709615 118709691 -70569863 + L1ME3A LINE L1 3425 3509 -2637 2616 94 46 0 chr6 118709728 118710079 -70569475 + L1PA10 LINE L1 5798 6164 -4 1155 229 110 57 chr6 118710243 118710515 -70569039 + L1ME3A LINE L1 5665 5974 -196 1459 191 170 15 chr6 118710515 118710856 -70568698 + MSTD LTR MaLR 3 396 0 1155 229 110 57 chr6 118710856 118711055 -70568499 + L1ME3A LINE L1 5974 6161 -9 2250 103 3 13 chr6 118711483 118711658 -70567896 - AluSx SINE Alu -4 308 136 2160 91 7 7 chr6 118711658 118711967 -70567587 - AluSc SINE Alu 0 309 1 2250 103 3 13 chr6 118711967 118712102 -70567452 - AluSx SINE Alu -176 136 1 2277 110 20 0 chr6 118713519 118713820 -70565734 - AluSq SINE Alu -6 307 1 2912 171 91 12 chr6 118714188 118714785 -70564769 - MER73 LTR ERVL 0 644 1 2420 92 0 13 chr6 118714786 118715102 -70564452 + AluSq SINE Alu 1 312 -1 1932 177 46 0 chr6 118715369 118715697 -70563857 + MER2 DNA MER2_type 2 344 0 4920 95 79 80 chr6 118715709 118716606 -70562948 - Tigger3b DNA MER2_type 0 1231 336 890 141 0 7 chr6 118716606 118716741 -70562813 - AluJo SINE Alu -178 134 1 519 226 0 0 chr6 118716809 118716911 -70562643 - Tigger3b DNA MER2_type -1129 102 1 214 279 205 42 chr6 118716921 118717111 -70562443 + L2 LINE L2 2294 2514 -800 210 322 92 13 chr6 118717181 118717333 -70562221 + L2 LINE L2 2653 2816 -498 593 234 0 28 chr6 118717408 118717549 -70562005 - LTR16A LTR ERVL -1 449 313 1392 160 14 0 chr6 118717852 118718064 -70561490 + MER20 DNA MER1_type 1 215 -4 517 303 110 52 chr6 118718291 118718674 -70560880 - LTR67 LTR ERVL -1 556 152 844 133 0 49 chr6 118719513 118719656 -70559898 - AluJo SINE Alu -176 136 1 207 0 0 0 chr6 118719668 118719691 -70559863 + (A)n Simple_repeat Simple_repeat 1 23 0 332 143 0 0 chr6 118720102 118720165 -70559389 - L1MD3 LINE L1 0 7995 7933 232 283 0 0 chr6 118720313 118720366 -70559188 + MER5A DNA MER1_type 136 188 -1 372 279 174 36 chr6 118720543 118720819 -70558735 + L2 LINE L2 2938 3251 -62 28 61 0 0 chr6 118721224 118721273 -70558281 + AT_rich Low_complexity Low_complexity 1 49 0 26 0 0 0 chr6 118721315 118721341 -70558213 + AT_rich Low_complexity Low_complexity 1 26 0 1207 252 32 24 chr6 118721805 118722174 -70557380 + L1ME2 LINE L1 5792 6163 -1 422 218 106 14 chr6 118724034 118724176 -70555378 - L1MC5 LINE L1 -722 7239 7085 3157 98 40 31 chr6 118724176 118724346 -70555208 - MLT2A2 LTR ERVL 0 453 286 2430 82 10 0 chr6 118724346 118724651 -70554903 + AluY SINE Alu 1 308 -3 3157 98 40 31 chr6 118724651 118724929 -70554625 - MLT2A2 LTR ERVL -167 286 1 20152 72 11 4 chr6 118724929 118725203 -70554351 - HERVL-A2 LTR ERVL 0 5654 5383 2272 99 0 3 chr6 118725203 118725505 -70554049 - AluY SINE Alu -10 301 1 20152 72 11 4 chr6 118725505 118727771 -70551783 - HERVL-A2 LTR ERVL -271 5383 3096 244 59 29 0 chr6 118727871 118727905 -70551649 - L1PA2 LINE L1 -113 6042 6008 28902 74 26 2 chr6 118729130 118732827 -70546727 - HERVL-A2 LTR ERVL -1866 3788 1 3158 85 69 28 chr6 118732827 118733262 -70546292 - MLT2A2 LTR ERVL 0 453 1 2015 141 3 0 chr6 118733555 118733853 -70545701 + AluSx SINE Alu 1 299 -13 974 179 67 60 chr6 118734617 118734885 -70544669 - L1MC5 LINE L1 -999 6962 6693 1925 132 7 0 chr6 118735300 118735573 -70543981 - AluSx SINE Alu -37 275 1 507 17 0 0 chr6 118736194 118736254 -70543300 + (CA)n Simple_repeat Simple_repeat 1 60 0 438 178 33 0 chr6 118736397 118736487 -70543067 - MER5A DNA MER1_type -83 106 14 581 310 64 0 chr6 118736621 118736808 -70542746 - MLT1J LTR MaLR -312 199 1 234 0 0 0 chr6 118736973 118736999 -70542555 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 2041 128 17 0 chr6 118738040 118738330 -70541224 - AluSg SINE Alu 0 310 16 1528 108 5 9 chr6 118738437 118738650 -70540904 + AluSx SINE Alu 25 236 -76 24883 119 105 63 chr6 118738669 118744574 -70534980 - L1PA8 LINE L1 -21 6151 2 15309 183 28 36 chr6 118744835 118746479 -70533075 + L1PB1 LINE L1 89 1744 -5123 2094 131 7 0 chr6 118746479 118746785 -70532769 + AluSx SINE Alu 3 310 -2 15309 183 28 36 chr6 118746785 118751838 -70527716 + L1PB1 LINE L1 1744 6865 -2 455 73 15 0 chr6 118752331 118752399 -70527155 + (TA)n Simple_repeat Simple_repeat 1 69 0 3930 208 58 29 chr6 118752403 118753408 -70526146 - L1MC3 LINE L1 -18 7767 6734 486 0 0 0 chr6 118754093 118754147 -70525407 + (CA)n Simple_repeat Simple_repeat 2 55 0 45002 39 3 1 chr6 118754489 118760635 -70518919 + L1PA3 LINE L1 3 6155 0 2530 163 103 4 chr6 118760845 118761310 -70518244 - MER68 LTR ERV1 -50 512 2 1973 207 88 19 chr6 118761478 118761946 -70517608 - MER74B LTR ERVL -67 555 56 2270 150 59 16 chr6 118762588 118763027 -70516527 + L1MB4 LINE L1 5722 6179 -1 237 221 67 87 chr6 118763456 118763560 -70515994 + MIR SINE MIR 50 151 -57 2120 197 45 32 chr6 118763882 118764324 -70515230 + MLT2B1 LTR ERVL 1 451 -69 2541 51 0 0 chr6 118764324 118764620 -70514934 - AluY SINE Alu -15 296 1 2120 197 45 32 chr6 118764620 118764649 -70514905 + MLT2B1 LTR ERVL 451 478 -42 904 131 0 0 chr6 118764662 118764792 -70514762 + AluSq/x SINE Alu 3 132 -181 2372 98 0 13 chr6 118764794 118765109 -70514445 + AluSx SINE Alu 1 311 -1 2079 262 103 55 chr6 118765123 118765378 -70514176 + L2 LINE L2 1474 1715 -1599 2230 113 0 7 chr6 118765378 118765688 -70513866 - AluSg SINE Alu -2 308 1 2079 262 103 55 chr6 118765688 118766389 -70513165 + L2 LINE L2 1715 2476 -838 250 310 80 10 chr6 118768135 118768235 -70511319 - MIR3 SINE MIR -13 195 89 2037 121 27 3 chr6 118769345 118769642 -70509912 - AluSx SINE Alu -8 304 1 595 138 0 11 chr6 118769685 118769925 -70509629 + AluSx SINE Alu 1 304 -5 1685 196 71 6 chr6 118770010 118770336 -70509218 + MER7A DNA MER2_type 2 346 0 195 257 168 35 chr6 118770975 118771088 -70508466 + L2 LINE L2 3141 3268 -4 1304 14 7 0 chr6 118771968 118772110 -70507444 + L1PA2 LINE L1 6008 6150 -5 187 267 33 17 chr6 118772401 118772461 -70507093 - MIR SINE MIR -66 142 82 2250 73 31 0 chr6 118772999 118773286 -70506268 - AluSp SINE Alu -17 296 1 1310 238 30 21 chr6 118773350 118773678 -70505876 + L1MC1 LINE L1 5 335 -6091 906 157 0 0 chr6 118773678 118773812 -70505742 + AluJb SINE Alu 1 134 -178 5749 123 46 147 chr6 118773813 118774980 -70504574 + L1MC1 LINE L1 329 1450 -4976 654 179 0 18 chr6 118774980 118775092 -70504462 + FRAM SINE Alu 62 171 -5 5749 123 46 147 chr6 118775092 118775232 -70504322 + L1MC1 LINE L1 1450 1603 -4823 901 157 0 22 chr6 118775232 118775366 -70504188 + FLAM_A SINE Alu 1 131 -2 7476 216 33 48 chr6 118775368 118775700 -70503854 + L1MC1 LINE L1 3564 3899 -2527 2459 80 3 0 chr6 118775700 118775999 -70503555 - AluSc SINE Alu -9 300 1 7476 216 33 48 chr6 118775999 118776927 -70502627 + L1MC1 LINE L1 3899 4781 -1645 2018 150 10 3 chr6 118776927 118777234 -70502320 + AluJb SINE Alu 1 309 -3 7476 216 33 48 chr6 118777234 118778117 -70501437 + L1MC1 LINE L1 4781 5676 -750 1178 108 0 0 chr6 118778119 118778276 -70501278 + AluSg/x SINE Alu 135 291 -19 5582 130 42 3 chr6 118778276 118779185 -70500369 + L1MC1 LINE L1 5670 6613 0 526 170 50 0 chr6 118779556 118779656 -70499898 - L1PB4 LINE L1 -2 6154 6050 60 37 0 0 chr6 118779674 118779755 -70499799 + AT_rich Low_complexity Low_complexity 1 81 0 2018 145 0 7 chr6 118779945 118780242 -70499312 + AluSx SINE Alu 1 295 -17 389 233 108 27 chr6 118780711 118780861 -70498693 + MER5A DNA MER1_type 1 164 -18 224 259 172 46 chr6 118780900 118781074 -70498480 - L2 LINE L2 -496 2818 2623 28 0 0 0 chr6 118781239 118781267 -70498287 + AT_rich Low_complexity Low_complexity 1 28 0 1063 166 6 0 chr6 118781358 118781533 -70498021 + L1MC4a LINE L1 7229 7404 -404 2112 103 0 3 chr6 118781534 118781816 -70497738 + AluSq SINE Alu 1 281 -32 279 0 0 0 chr6 118781816 118781847 -70497707 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2785 122 141 27 chr6 118781847 118782441 -70497113 - Tigger3b DNA MER2_type -556 676 1 1225 220 57 13 chr6 118783381 118783695 -70495859 - L1MB8 LINE L1 -22 6156 5829 454 261 117 11 chr6 118783881 118784145 -70495409 + L2 LINE L2 2843 3134 -179 1974 187 11 22 chr6 118784213 118784582 -70494972 - MLT1A1 LTR MaLR 0 365 1 2118 120 0 7 chr6 118784598 118784890 -70494664 + AluSq SINE Alu 1 290 -23 218 303 81 0 chr6 118784964 118785063 -70494491 + MIR SINE MIR 132 238 -24 212 188 21 21 chr6 118785085 118785133 -70494421 + L2 LINE L2 3180 3227 -86 2393 130 37 7 chr6 118785642 118786139 -70493415 + L1MA4 LINE L1 5588 6142 -158 22 0 0 0 chr6 118787067 118787089 -70492465 + AT_rich Low_complexity Low_complexity 1 22 0 217 333 94 0 chr6 118789025 118789121 -70490433 + MIR3 SINE MIR 81 185 -23 943 146 6 41 chr6 118790257 118790428 -70489126 + AluSg/x SINE Alu 128 292 -18 1413 158 140 38 chr6 118790717 118790982 -70488572 - AluJb SINE Alu -9 293 2 2001 199 150 88 chr6 118791084 118791663 -70487891 - MLT1E2 LTR MaLR -9 617 1 2150 129 0 0 chr6 118795902 118796188 -70483366 - AluSx SINE Alu -24 288 3 2162 99 0 20 chr6 118798479 118798771 -70480783 - AluSq SINE Alu -27 286 1 2366 141 59 12 chr6 118801054 118801457 -70478097 - Tigger1 DNA MER2_type 0 2418 1997 2801 91 98 7 chr6 118801457 118801864 -70477690 + MLT2A1 LTR ERVL 1 444 0 12163 127 51 4 chr6 118801864 118803774 -70475780 - Tigger1 DNA MER2_type -417 2001 1 196 339 16 0 chr6 118804004 118804066 -70475488 + L2 LINE L2 329 391 -2923 347 314 35 64 chr6 118804245 118804417 -70475137 - MER5A DNA MER1_type 0 189 23 186 354 67 17 chr6 118804494 118804672 -70474882 + L2 LINE L2 606 792 -2522 353 279 103 37 chr6 118804675 118804811 -70474743 - L2 LINE L2 -16 3256 3112 367 327 83 29 chr6 118805888 118806332 -70473222 - L1MC/D LINE L1 -307 5814 5405 251 263 216 30 chr6 118806464 118806765 -70472789 - L1MC/D LINE L1 -908 5238 4882 266 259 51 120 chr6 118809357 118809431 -70470123 - MIR3 SINE MIR -46 162 103 1976 155 0 0 chr6 118809431 118809722 -70469832 + AluSx SINE Alu 1 291 -21 266 259 51 120 chr6 118809722 118809805 -70469749 - MIR3 SINE MIR -105 103 16 2198 109 0 10 chr6 118810015 118810309 -70469245 - AluSc SINE Alu -16 293 3 186 139 0 0 chr6 118812457 118812493 -70467061 + L2 LINE L2 3274 3309 -4 405 0 0 0 chr6 118813227 118813272 -70466282 + (TATG)n Simple_repeat Simple_repeat 3 47 0 1004 169 55 6 chr6 118813283 118813466 -70466088 - AluJo SINE Alu -116 196 5 367 228 101 74 chr6 118813688 118813837 -70465717 - L3 LINE CR1 -56 1521 1369 244 195 0 65 chr6 118814068 118814145 -70465409 - MIR SINE MIR -10 252 181 329 274 0 0 chr6 118814161 118814223 -70465331 - MER2 DNA MER2_type 0 345 284 1094 212 0 0 chr6 118814275 118814468 -70465086 - MER2 DNA MER2_type -136 209 17 489 293 7 20 chr6 118814470 118814620 -70464934 - MIR SINE MIR -104 158 11 1952 139 0 20 chr6 118815954 118816257 -70463297 - AluJo SINE Alu -15 297 1 180 125 0 0 chr6 118816851 118816883 -70462671 + (CCA)n Simple_repeat Simple_repeat 2 33 0 2164 126 0 0 chr6 118817733 118818027 -70461527 - AluSx SINE Alu -18 294 1 284 225 275 36 chr6 118818885 118819249 -70460305 - L2 LINE L2 -50 3263 2813 1212 103 0 0 chr6 118819525 118819680 -70459874 - AluSg/x SINE Alu -73 239 85 186 103 0 0 chr6 118819689 118819718 -70459836 + (T)n Simple_repeat Simple_repeat 1 29 0 27 29 0 0 chr6 118820317 118820351 -70459203 + AT_rich Low_complexity Low_complexity 1 34 0 1840 299 115 26 chr6 118820487 118821866 -70457688 + L2 LINE L2 1813 3312 -1 15101 120 52 21 chr6 118824086 118825265 -70454289 - Tigger1 DNA MER2_type 0 2418 1277 1563 194 6 38 chr6 118825265 118825585 -70453969 - AluJb SINE Alu -2 310 1 15101 120 52 21 chr6 118825585 118826750 -70452804 - Tigger1 DNA MER2_type -1141 1277 1 28 95 0 0 chr6 118826833 118826917 -70452637 + AT_rich Low_complexity Low_complexity 1 84 0 1531 181 47 40 chr6 118827074 118827372 -70452182 - AluJo SINE Alu -12 300 1 444 321 13 25 chr6 118827435 118827594 -70451960 + MIR3 SINE MIR 16 172 -36 516 257 76 41 chr6 118828214 118828385 -70451169 + MLT1J LTR MaLR 1 177 -334 383 225 56 0 chr6 118832469 118832558 -70446996 - MIR SINE MIR -76 186 93 674 173 115 0 chr6 118832670 118832809 -70446745 - MER58B DNA MER1_type -6 335 181 211 149 64 21 chr6 118833307 118833354 -70446200 - L2 LINE L2 0 3313 3265 220 274 71 35 chr6 118833571 118833684 -70445870 + L2 LINE L2 3193 3309 -4 519 172 0 0 chr6 118884033 118884120 -70395434 + Tigger5 DNA MER2_type 2237 2323 0 429 141 33 11 chr6 118884128 118884220 -70395334 - HAL1b LINE L1 -257 1091 998 2409 97 0 0 chr6 118884220 118884520 -70395034 + AluSc SINE Alu 1 300 -9 276 77 0 0 chr6 118886196 118886235 -70393319 + (TATTG)n Simple_repeat Simple_repeat 4 42 0 254 103 0 0 chr6 118886235 118886274 -70393280 - Alu SINE Alu -22 280 242 21 0 0 0 chr6 118886971 118886992 -70392562 + AT_rich Low_complexity Low_complexity 1 21 0 5483 84 1 8 chr6 118887111 118887906 -70391648 + L1PA10 LINE L1 5388 6168 0 1279 159 180 8 chr6 118888444 118888689 -70390865 + AluJb SINE Alu 1 287 -15 386 326 134 58 chr6 118888884 118889249 -70390305 - L2 LINE L2 -2 3270 2865 2717 88 8 11 chr6 118889249 118889625 -70389929 - THE1C LTR MaLR 0 375 1 386 326 134 58 chr6 118889625 118889692 -70389862 - L2 LINE L2 -407 2865 2805 766 247 100 51 chr6 118889809 118890223 -70389331 - MLT1J1 LTR MaLR -15 427 1 22 35 0 0 chr6 118891321 118891350 -70388204 + AT_rich Low_complexity Low_complexity 1 29 0 742 267 92 40 chr6 118891728 118892031 -70387523 - MLT1I LTR MaLR -5 404 86 200 265 11 0 chr6 118892302 118892358 -70387196 - MIR SINE MIR -63 145 106 353 274 105 8 chr6 118893300 118893424 -70386130 + MIR3 SINE MIR 45 180 -28 1943 131 10 7 chr6 118893884 118894175 -70385379 - AluJo SINE Alu -12 300 9 286 222 0 0 chr6 118894669 118894723 -70384831 + L2 LINE L2 2262 2315 -999 21 36 0 0 chr6 118894828 118894856 -70384698 + AT_rich Low_complexity Low_complexity 1 28 0 200 242 136 15 chr6 118895020 118895086 -70384468 - MIR3 SINE MIR -52 156 83 848 209 71 5 chr6 118895196 118895392 -70384162 - MER3 DNA MER1_type 0 209 1 1331 211 54 30 chr6 118896074 118896410 -70383144 - MER2 DNA MER2_type 0 344 1 203 408 92 0 chr6 118899615 118899745 -70379809 - L2 LINE L2 -8 3264 3123 1039 307 50 12 chr6 118900085 118900486 -70379068 + LTR16A LTR ERVL 35 450 0 247 150 33 17 chr6 118901412 118901472 -70378082 + (CATA)n Simple_repeat Simple_repeat 3 63 0 2164 113 0 0 chr6 118902665 118902956 -70376598 + AluSx SINE Alu 1 291 -21 204 262 33 16 chr6 118905197 118905258 -70374296 - MIR SINE MIR -73 135 74 2031 129 4 0 chr6 118905454 118905732 -70373822 + AluSg SINE Alu 1 279 -31 239 252 8 73 chr6 118906087 118906210 -70373344 - 7SK RNA RNA -71 122 8 2120 101 0 7 chr6 118906459 118906775 -70372779 + AluSx SINE Alu 1 314 0 1486 159 58 52 chr6 118907111 118907475 -70372079 + L1MB3 LINE L1 5682 6047 -136 448 152 40 50 chr6 118907584 118907683 -70371871 + L1MB3 LINE L1 6032 6129 -54 274 94 0 57 chr6 118907708 118907761 -70371793 + L1MB4 LINE L1 6112 6161 -19 2342 15 8 4 chr6 118908032 118908297 -70371257 + AluYa5 SINE Alu 39 304 -7 931 203 72 29 chr6 118908361 118908568 -70370986 - MER58A DNA MER1_type -8 216 1 2209 220 69 15 chr6 118909663 118910382 -70369172 + L1MC1 LINE L1 4219 5036 -1110 744 132 164 0 chr6 118910381 118910413 -70369141 + L1MC1 LINE L1 5260 5285 -1048 * 255 31 0 0 chr6 118910413 118910445 -70369109 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 744 132 164 0 chr6 118910445 118910571 -70368983 + L1MC1 LINE L1 5285 5444 -889 1962 105 8 0 chr6 118910572 118910829 -70368725 + AluSx SINE Alu 1 259 -53 22 35 0 0 chr6 118910829 118910858 -70368696 + AT_rich Low_complexity Low_complexity 1 29 0 243 59 0 0 chr6 118910884 118910918 -70368636 + AluSx SINE Alu 260 293 -7 5192 163 22 12 chr6 118910918 118911815 -70367739 + L1MC1 LINE L1 5428 6333 0 2204 99 20 13 chr6 118911825 118912129 -70367425 + AluSg SINE Alu 1 306 -4 199 295 63 0 chr6 118912911 118913006 -70366548 + MIR SINE MIR 64 164 -98 730 224 104 53 chr6 118913461 118913845 -70365709 + MLT1H LTR MaLR 102 549 0 388 345 52 26 chr6 118914275 118914466 -70365088 + MIR3 SINE MIR 3 198 -10 549 0 0 0 chr6 118915233 118915294 -70364260 + (TA)n Simple_repeat Simple_repeat 1 61 0 1040 244 9 14 chr6 118917244 118917465 -70362089 - MER58A DNA MER1_type -4 220 1 730 237 79 6 chr6 118918363 118918570 -70360984 - MIR SINE MIR -60 202 1 2038 132 7 3 chr6 118918777 118919081 -70360473 + AluSx SINE Alu 1 305 -7 549 217 184 7 chr6 118919793 118919945 -70359609 + MER58C DNA MER1_type 32 210 -5 199 329 49 12 chr6 118920101 118920183 -70359371 - MIR SINE MIR -115 147 63 216 259 47 24 chr6 118920356 118920441 -70359113 - L2 LINE L2 -47 3266 3180 504 254 25 0 chr6 118920517 118920635 -70358919 + MER5C DNA MER1_type 4 124 -200 518 288 146 16 chr6 118920732 118921153 -70358401 - L2 LINE L2 -225 3088 2599 206 254 18 0 chr6 118922020 118922075 -70357479 + A-rich Low_complexity Low_complexity 5 60 0 887 136 2 14 chr6 118922359 118922524 -70357030 + L1MB1 LINE L1 6028 6168 0 1899 135 151 8 chr6 118922632 118922871 -70356683 + L1MA8 LINE L1 5870 6073 -218 387 0 0 0 chr6 118922871 118922914 -70356640 + (CA)n Simple_repeat Simple_repeat 2 44 0 1899 135 151 8 chr6 118922914 118923039 -70356515 + L1MA8 LINE L1 6073 6288 -3 406 290 69 48 chr6 118925389 118925620 -70353934 + MLT1K LTR MaLR 346 581 -7 24 0 0 0 chr6 118925789 118925813 -70353741 + AT_rich Low_complexity Low_complexity 1 24 0 245 294 20 0 chr6 118926024 118926126 -70353428 + L1M4 LINE L1 3342 3445 -2701 430 297 86 35 chr6 118926294 118926438 -70353116 - MIR SINE MIR -10 252 90 2248 107 3 0 chr6 118926438 118926736 -70352818 + AluSg SINE Alu 1 299 -11 430 297 86 35 chr6 118926736 118926823 -70352731 - MIR SINE MIR -172 90 9 206 339 15 0 chr6 118927381 118927446 -70352108 - MER5A DNA MER1_type -88 101 36 2010 125 16 29 chr6 118927529 118927840 -70351714 + AluSx SINE Alu 1 307 -5 1410 86 19 164 chr6 118928106 118928375 -70351179 + MER30 DNA MER1_type 1 230 0 239 377 82 0 chr6 118929838 118929984 -70349570 - MIR3 SINE MIR -19 189 32 185 81 0 54 chr6 118930483 118930520 -70349034 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 234 0 0 0 chr6 118931632 118931658 -70347896 + (CA)n Simple_repeat Simple_repeat 2 27 0 2003 129 6 35 chr6 118931686 118932003 -70347551 + AluSx SINE Alu 1 308 -4 779 191 0 0 chr6 118932003 118932118 -70347436 - AluJb SINE Alu -196 116 2 2291 82 20 0 chr6 118932641 118932935 -70346619 - AluY SINE Alu -11 300 1 2263 117 0 0 chr6 118933175 118933474 -70346080 - AluSx SINE Alu -13 299 1 620 136 152 0 chr6 118934176 118934308 -70345246 - MER33 DNA MER1_type 0 324 173 845 179 29 11 chr6 118934487 118934665 -70344889 - MER33 DNA MER1_type -255 69 1 265 280 154 7 chr6 118934877 118935020 -70344534 + L1P LINE L1 4077 4240 -1906 736 125 227 0 chr6 118935252 118935380 -70344174 + FRAM SINE Alu 1 154 -22 352 313 66 0 chr6 118935556 118935722 -70343832 + L1ME4a LINE L1 5709 5885 -236 31 26 0 0 chr6 118935744 118935782 -70343772 + AT_rich Low_complexity Low_complexity 1 38 0 681 291 45 0 chr6 118935954 118936153 -70343401 + MIR SINE MIR 44 251 -11 2277 96 0 7 chr6 118937498 118937799 -70341755 + AluSx SINE Alu 1 299 -13 1980 138 3 3 chr6 118939611 118939902 -70339652 + AluSx SINE Alu 5 295 -17 180 0 0 0 chr6 118942171 118942191 -70337363 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 367 320 39 13 chr6 118942212 118942358 -70337196 - MIR SINE MIR -66 142 19 372 22 0 0 chr6 118943200 118943245 -70336309 + (CA)n Simple_repeat Simple_repeat 1 45 0 336 276 136 76 chr6 118943535 118943941 -70335613 - L1M2 LINE L1 -5770 1079 650 29 0 0 0 chr6 118943993 118944022 -70335532 + GC_rich Low_complexity Low_complexity 1 29 0 437 239 75 22 chr6 118944998 118945132 -70334422 - 7SLRNA srpRNA srpRNA -140 180 40 303 272 139 37 chr6 118945284 118945432 -70334122 - MIR SINE MIR -42 166 1 207 306 72 36 chr6 118945801 118945912 -70333642 - MIR SINE MIR -119 143 29 461 291 34 0 chr6 118946314 118946431 -70333123 + MER91A DNA MER1_type 36 156 -40 252 254 55 0 chr6 118946434 118946489 -70333065 + MER91A DNA MER1_type 119 176 -20 280 348 152 0 chr6 118946718 118946876 -70332678 + MIR3 SINE MIR 20 201 -7 2340 110 7 0 chr6 118947936 118948246 -70331308 - AluSx SINE Alu 0 312 1 198 0 0 0 chr6 118948992 118949014 -70330540 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 206 318 79 0 chr6 118949014 118949077 -70330477 - MER91C DNA MER1_type -42 98 31 2658 159 29 0 chr6 118949685 118950101 -70329453 - MSTA LTR MaLR 0 428 1 490 145 12 0 chr6 118950101 118950184 -70329370 - MSTA-int LTR MaLR 0 1651 1568 1570 196 4 11 chr6 118950187 118950463 -70329091 - AluJb SINE Alu -38 274 1 1861 150 3 0 chr6 118950464 118950750 -70328804 - MSTA-int LTR MaLR -680 971 685 * 14779 173 33 21 chr6 118950748 118953591 -70325963 + L1M1 LINE L1 1268 4201 -3364 2288 103 0 0 chr6 118953591 118953883 -70325671 + AluSc SINE Alu 1 292 -17 14779 173 33 21 chr6 118953883 118955764 -70323790 + L1M1 LINE L1 4201 6059 -1506 39294 82 7 6 chr6 118955775 118961912 -70317642 + L1PA5 LINE L1 11 6154 0 1164 256 28 48 chr6 118961912 118962009 -70317545 + L1ME LINE L1 5385 5482 -688 2425 72 7 0 chr6 118962009 118962316 -70317238 + AluY SINE Alu 1 309 -2 1164 256 28 48 chr6 118962316 118962651 -70316903 + L1ME LINE L1 5482 5808 -362 1546 96 14 5 chr6 118962778 118962998 -70316556 + AluY SINE Alu 86 307 -4 2410 82 0 16 chr6 118963369 118963685 -70315869 + AluY SINE Alu 1 311 0 5146 89 43 29 chr6 118963784 118964636 -70314918 + SVA Other Other 1 864 -522 29 47 0 0 chr6 118965254 118965297 -70314257 + GC_rich Low_complexity Low_complexity 1 43 0 2168 121 0 0 chr6 118966014 118966296 -70313258 + AluSx SINE Alu 1 282 -30 297 0 0 0 chr6 118966299 118966332 -70313222 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 250 332 190 34 chr6 118967567 118967983 -70311571 - L2 LINE L2 -1392 1922 1442 311 258 21 11 chr6 118967999 118968092 -70311462 - LTR67 LTR ERVL -6 551 458 396 290 56 37 chr6 118969564 118969751 -70309803 + MIR SINE MIR 6 192 -70 328 205 36 24 chr6 118969874 118969957 -70309597 + L2 LINE L2 3227 3310 -3 7438 56 7 2 chr6 118970181 118971256 -70308298 + L1PA7 LINE L1 5073 6154 0 3048 140 55 10 chr6 118971256 118971779 -70307775 + L1MA8 LINE L1 5605 6151 -140 1066 209 45 98 chr6 118972076 118972124 -70307430 + MER58B DNA MER1_type 3 52 -2368 2637 52 0 0 chr6 118972124 118972434 -70307120 - AluY SINE Alu -1 310 1 1066 209 45 98 chr6 118972434 118972743 -70306811 + MER58B DNA MER1_type 52 341 0 508 279 0 27 chr6 118973660 118973843 -70305711 + GA-rich Low_complexity Low_complexity 1 178 0 964 200 0 11 chr6 118974315 118974505 -70305049 + MER5A DNA MER1_type 2 189 0 357 330 86 30 chr6 118975022 118975255 -70304299 - L2 LINE L2 -203 3069 2824 954 270 133 51 chr6 118975272 118975957 -70303597 - L2 LINE L2 -596 2718 1978 287 246 29 0 chr6 118976706 118976793 -70302761 + L1ME3A LINE L1 6077 6169 -1 404 242 117 0 chr6 118976987 118977107 -70302447 - MIR SINE MIR -34 228 95 549 281 11 0 chr6 118977660 118977839 -70301715 - L1 LINE L1 -1909 4237 4047 2412 96 0 0 chr6 118978395 118978707 -70300847 - AluSx SINE Alu 0 312 1 334 273 23 0 chr6 118979077 118979165 -70300389 + L1MC4 LINE L1 6614 6703 -1339 311 322 0 0 chr6 118979117 118979207 -70300347 - L1MC4 LINE L1 -1339 6703 6614 * 310 287 23 0 chr6 118979190 118979277 -70300277 + L1MC4 LINE L1 6615 6703 -1339 * 210 71 0 0 chr6 118980338 118980366 -70299188 + (T)n Simple_repeat Simple_repeat 1 28 0 23 54 0 0 chr6 118982296 118982333 -70297221 + AT_rich Low_complexity Low_complexity 1 37 0 393 245 20 0 chr6 118982721 118982823 -70296731 - MER5A DNA MER1_type -80 109 6 21 0 0 0 chr6 118982882 118982903 -70296651 + AT_rich Low_complexity Low_complexity 1 21 0 268 282 126 29 chr6 118982999 118983102 -70296452 + L2 LINE L2 3160 3272 0 42400 40 1 2 chr6 118983557 118988618 -70290936 - L1P LINE L1 -1084 5062 7 366 288 23 0 chr6 118988618 118988723 -70290831 - MER58 DNA MER1_type -107 108 1 280 253 11 46 chr6 118990195 118990282 -70289272 - MIR SINE MIR -56 206 123 201 280 37 37 chr6 118990352 118990459 -70289095 - MIR SINE MIR -50 212 106 1979 114 26 0 chr6 118990894 118991167 -70288387 - AluSx SINE Alu -12 300 21 299 326 45 38 chr6 118991341 118991473 -70288081 + L2 LINE L2 3180 3312 -1 198 0 0 0 chr6 118991604 118991626 -70287928 + (A)n Simple_repeat Simple_repeat 1 22 0 473 272 9 9 chr6 118994897 118995011 -70284543 - L2 LINE L2 0 3313 3200 459 35 0 0 chr6 118995815 118995872 -70283682 + (TGGA)n Simple_repeat Simple_repeat 1 57 0 192 207 298 16 chr6 118996022 118996143 -70283411 + MIR SINE MIR 87 241 -21 309 231 13 13 chr6 118996432 118996510 -70283044 + Charlie7 DNA MER1_type 37 114 -2498 5182 131 47 2 chr6 118998504 118998983 -70280571 - L1MA4 LINE L1 -4 6296 5763 297 0 0 0 chr6 118998983 118999016 -70280538 + (TG)n Simple_repeat Simple_repeat 2 34 0 5182 131 47 2 chr6 118999016 118999368 -70280186 - L1MA4 LINE L1 -537 5763 5428 326 331 146 36 chr6 118999447 118999973 -70279581 + L2 LINE L2 2134 2717 -597 263 368 45 30 chr6 119000001 119000134 -70279420 + L2 LINE L2 3137 3271 -1 2313 157 14 11 chr6 119000811 119001174 -70278380 + MLT1A1 LTR MaLR 1 364 -1 225 241 0 0 chr6 119002255 119002276 -70277278 - L1MC4 LINE L1 -1337 6705 6685 557 77 13 26 chr6 119002276 119002354 -70277200 + MADE1 DNA Mariner 1 77 -3 225 241 0 0 chr6 119002354 119002386 -70277168 - L1MC4 LINE L1 -1356 6686 6652 287 289 0 0 chr6 119002662 119002738 -70276816 + L2 LINE L2 3238 3313 0 243 333 26 26 chr6 119003233 119003347 -70276207 + MER5A DNA MER1_type 55 168 -21 * 314 358 28 0 chr6 119003250 119003359 -70276195 - MER5B DNA MER1_type -59 119 8 2305 113 0 3 chr6 119003509 119003809 -70275745 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr6 119003819 119003841 -70275713 + AT_rich Low_complexity Low_complexity 1 22 0 340 272 22 11 chr6 119003924 119004016 -70275538 + L3 LINE CR1 1425 1517 -60 474 324 114 26 chr6 119004932 119005461 -70274093 + L2 LINE L2 2633 3209 -63 478 280 108 34 chr6 119006329 119006597 -70272957 - L2 LINE L2 0 3313 3026 235 343 9 29 chr6 119006832 119006937 -70272617 + MIR3 SINE MIR 67 169 -39 717 251 64 30 chr6 119007632 119007867 -70271687 + MIR SINE MIR 20 262 0 2028 75 0 8 chr6 119008097 119008365 -70271189 + L1MA2 LINE L1 6039 6304 0 194 61 0 30 chr6 119008918 119008951 -70270603 + (TTTTG)n Simple_repeat Simple_repeat 5 36 0 198 348 54 11 chr6 119009493 119009585 -70269969 + L2 LINE L2 3125 3220 -52 211 219 124 95 chr6 119011126 119011263 -70268291 + MIR SINE MIR 22 162 -100 240 35 0 0 chr6 119012470 119012499 -70267055 + (A)n Simple_repeat Simple_repeat 1 29 0 278 291 40 61 chr6 119014495 119014643 -70264911 + L2 LINE L2 3164 3308 -5 642 303 59 19 chr6 119015511 119015818 -70263736 + L1ME4a LINE L1 5603 5921 -200 358 138 35 0 chr6 119015839 119015897 -70263657 + L1ME4a LINE L1 5975 6034 -87 709 153 32 0 chr6 119016969 119017126 -70262428 + CT-rich Low_complexity Low_complexity 1 162 0 1929 136 0 0 chr6 119017136 119017408 -70262146 - AluSx SINE Alu -40 272 1 359 267 23 30 chr6 119017493 119017624 -70261930 - MIR SINE MIR -30 232 103 1772 171 7 0 chr6 119017903 119018202 -70261352 + AluJb SINE Alu 1 301 -11 2272 119 32 42 chr6 119018377 119018754 -70260800 + Tigger2 DNA MER2_type 2346 2718 0 554 255 54 39 chr6 119018754 119018958 -70260596 + MER113 DNA MER1_type? 214 420 -101 2186 106 0 7 chr6 119019114 119019406 -70260148 - AluSx SINE Alu -22 290 1 2396 81 7 0 chr6 119020770 119021067 -70258487 + AluSx SINE Alu 1 299 -13 4223 17 2 0 chr6 119022128 119022587 -70256967 - L1PA4 LINE L1 0 6155 5696 754 317 85 17 chr6 119023029 119023499 -70256055 - L2 LINE L2 -361 2953 2452 2734 225 72 41 chr6 119023859 119023930 -70255624 + L1ME3A LINE L1 5215 5282 -888 288 0 0 0 chr6 119023930 119023962 -70255592 + (CA)n Simple_repeat Simple_repeat 2 33 0 2734 225 72 41 chr6 119023962 119024815 -70254739 + L1ME3A LINE L1 5282 6166 -4 274 250 71 18 chr6 119025652 119025764 -70253790 - HAL1b LINE L1 -477 871 754 665 284 95 64 chr6 119026080 119026911 -70252643 - HAL1 LINE L1 -833 1674 818 25 31 0 0 chr6 119027273 119027305 -70252249 + AT_rich Low_complexity Low_complexity 1 32 0 432 0 0 0 chr6 119027554 119027602 -70251952 + (TG)n Simple_repeat Simple_repeat 1 48 0 4703 66 2 0 chr6 119027617 119028178 -70251376 - L1PA7 LINE L1 -2 6152 5591 286 214 29 14 chr6 119028960 119029030 -70250524 + GA-rich Low_complexity Low_complexity 3 73 0 245 278 0 0 chr6 119029129 119029183 -70250371 + CT-rich Low_complexity Low_complexity 1 54 0 6633 47 3 0 chr6 119029787 119030548 -70249006 + L1PA5 LINE L1 5388 6150 -4 2232 124 0 0 chr6 119031839 119032137 -70247417 - AluSg SINE Alu -12 298 1 1276 103 0 16 chr6 119033022 119033207 -70246347 + AluY SINE Alu 1 182 -129 4226 103 23 21 chr6 119034232 119034269 -70245285 + L1MA3 LINE L1 5691 5726 -579 1996 84 0 97 chr6 119034269 119034608 -70244946 - AluSc SINE Alu 0 309 1 4226 103 23 21 chr6 119034608 119035183 -70244371 + L1MA3 LINE L1 5726 6305 0 1211 233 137 6 chr6 119035504 119035826 -70243728 + Cheshire DNA MER1_type 1 364 -2056 * 1596 225 99 12 chr6 119035821 119036225 -70243329 + MLT1C LTR MaLR 17 455 -12 27 29 0 0 chr6 119036542 119036576 -70242978 + AT_rich Low_complexity Low_complexity 1 34 0 405 39 0 0 chr6 119037989 119038040 -70241514 + (TG)n Simple_repeat Simple_repeat 1 51 0 249 33 0 0 chr6 119038039 119038069 -70241485 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 317 286 116 0 chr6 119038171 119038283 -70241271 - MIR SINE MIR -28 234 110 282 83 0 0 chr6 119038292 119038328 -70241226 - MLT2D LTR ERVL -4 460 425 2127 163 49 3 chr6 119038386 119038735 -70240819 - MLT2D LTR ERVL -49 365 1 313 287 188 24 chr6 119039011 119039432 -70240122 + L1ME4a LINE L1 5539 6028 -93 1487 141 67 11 chr6 119039566 119039850 -70239704 - L1MA8 LINE L1 -2 6289 5990 209 320 50 20 chr6 119040716 119040816 -70238738 + L2 LINE L2 2715 2817 -497 968 274 104 11 chr6 119043564 119043921 -70235633 - MLT1L LTR MaLR -8 607 218 187 302 70 12 chr6 119044523 119044609 -70234945 - L3b LINE CR1 -228 1355 1265 267 31 0 0 chr6 119045497 119045529 -70234025 + (GA)n Simple_repeat Simple_repeat 1 32 0 24 53 0 0 chr6 119045994 119046032 -70233522 + AT_rich Low_complexity Low_complexity 1 38 0 2264 106 10 0 chr6 119047101 119047404 -70232150 - AluSx SINE Alu -6 306 1 7204 72 14 3 chr6 119048626 119049743 -70229811 - L1PA10 LINE L1 0 6168 5053 393 192 0 14 chr6 119049774 119049847 -70229707 + L1MC1 LINE L1 6135 6206 -127 378 0 0 0 chr6 119051006 119051048 -70228506 + (CA)n Simple_repeat Simple_repeat 2 43 0 227 299 130 0 chr6 119051113 119051190 -70228364 + MIR3 SINE MIR 115 201 -7 3460 148 60 12 chr6 119051282 119051938 -70227616 + L1MC1 LINE L1 5647 6333 0 26 0 0 0 chr6 119053807 119053833 -70225721 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr6 119055252 119055285 -70224269 + AT_rich Low_complexity Low_complexity 1 33 0 1641 148 10 48 chr6 119055491 119055781 -70223773 - AluJo SINE Alu -25 287 9 318 323 92 23 chr6 119056736 119056866 -70222688 + L2 LINE L2 3126 3264 -8 709 276 111 9 chr6 119057135 119057360 -70222194 - MIR SINE MIR 0 262 15 234 213 43 0 chr6 119057457 119057504 -70222050 + polypyrimidine Low_complexity Low_complexity 1 49 0 445 308 0 15 chr6 119058324 119058457 -70221097 + MIR SINE MIR 2 132 -130 249 368 9 0 chr6 119059176 119059282 -70220272 - L3 LINE CR1 -354 1223 1117 607 329 104 0 chr6 119059596 119059818 -70219736 - MIR SINE MIR 0 262 18 323 282 17 0 chr6 119059945 119060062 -70219492 - MER103 DNA DNA -2 164 46 277 305 148 14 chr6 119060103 119060313 -70219241 - L1M4 LINE L1 -1954 4192 3955 2837 64 3 18 chr6 119060313 119060703 -70218851 - L1PA7 LINE L1 0 6154 5771 328 349 57 6 chr6 119060795 119060970 -70218584 - MIR SINE MIR -58 204 21 305 257 48 28 chr6 119061080 119061231 -70218323 + MIR3 SINE MIR 4 154 -65 1803 119 0 0 chr6 119061416 119061688 -70217866 - AluSx SINE Alu 0 318 47 1715 148 21 21 chr6 119061713 119061997 -70217557 + AluJb SINE Alu 1 284 -28 273 146 0 0 chr6 119062003 119062051 -70217503 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 2744 221 64 36 chr6 119062065 119063408 -70216146 - L1ME1 LINE L1 0 6166 4785 437 277 72 27 chr6 119063414 119064090 -70215464 - L1ME1 LINE L1 -2116 4030 3257 355 167 0 15 chr6 119064107 119064173 -70215381 - MER58 DNA MER1_type 0 2420 2356 7757 17 0 0 chr6 119064263 119065361 -70214193 - L1PA3 LINE L1 -5 6150 5050 2083 97 7 3 chr6 119066148 119066446 -70213108 - AluY SINE Alu -12 299 1 1337 194 26 96 chr6 119067232 119067390 -70212164 + Charlie1b DNA MER1_type 58 225 -2536 2513 53 20 0 chr6 119067390 119067690 -70211864 - AluY SINE Alu -5 306 1 1337 194 26 96 chr6 119067690 119068032 -70211522 + Charlie1b DNA MER1_type 225 523 0 240 231 0 15 chr6 119068113 119068178 -70211376 - MLT1F LTR MaLR -279 316 253 204 40 0 0 chr6 119068181 119068206 -70211348 + (A)n Simple_repeat Simple_repeat 1 25 0 288 156 16 16 chr6 119068292 119068356 -70211198 - MLT1F LTR MaLR -459 83 20 21 82 0 0 chr6 119068525 119068574 -70210980 + AT_rich Low_complexity Low_complexity 1 49 0 2259 200 111 16 chr6 119069060 119070126 -70209428 - L1ME1 LINE L1 -332 5834 4663 421 244 100 25 chr6 119070141 119070301 -70209253 + MIR SINE MIR 91 262 0 1447 184 42 36 chr6 119070351 119070688 -70208866 + MER44D DNA MER2_type 1 609 0 252 86 0 0 chr6 119070738 119070773 -70208781 + (TG)n Simple_repeat Simple_repeat 2 36 0 1105 162 0 96 chr6 119071070 119071299 -70208255 - AluJo SINE Alu -20 292 86 418 278 70 0 chr6 119071401 119071516 -70208038 + MER119 DNA MER1_type 5 127 -456 335 239 34 17 chr6 119071516 119071633 -70207921 + MER119 DNA MER1_type 463 581 -2 250 255 122 10 chr6 119071899 119071997 -70207557 - MIR SINE MIR -48 214 106 29 0 0 0 chr6 119072332 119072361 -70207193 + AT_rich Low_complexity Low_complexity 1 29 0 1139 158 35 0 chr6 119072773 119072975 -70206579 + MER3 DNA MER1_type 1 209 0 2602 274 49 50 chr6 119074898 119075131 -70204423 - L2 LINE L2 0 3313 3081 2185 176 41 0 chr6 119075131 119075546 -70204008 - MSTB1 LTR MaLR 0 432 1 2602 274 49 50 chr6 119075546 119076908 -70202646 - L2 LINE L2 -232 3081 1713 227 310 222 30 chr6 119077136 119077339 -70202215 - MIR SINE MIR -9 253 12 2107 122 0 0 chr6 119077738 119078025 -70201529 + AluSx SINE Alu 1 287 -25 542 28 14 0 chr6 119078026 119078098 -70201456 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 1005 279 67 48 chr6 119080343 119080805 -70198749 + MLT1H1 LTR MaLR 8 478 -77 189 0 0 0 chr6 119080977 119080998 -70198556 + (T)n Simple_repeat Simple_repeat 1 21 0 2422 52 0 7 chr6 119081740 119082046 -70197508 - L1PA7 LINE L1 -3 6151 5848 1859 91 0 0 chr6 119082046 119082345 -70197209 + L1P3 LINE L1 1480 1769 -4692 262 285 69 23 chr6 119082354 119082484 -70197070 - Charlie8 DNA MER1_type -2272 145 10 559 158 0 0 chr6 119083210 119083292 -70196262 - AluJo SINE Alu -228 84 3 25 31 0 0 chr6 119083371 119083403 -70196151 + AT_rich Low_complexity Low_complexity 1 32 0 220 143 32 32 chr6 119083458 119083521 -70196033 + (TA)n Simple_repeat Simple_repeat 1 63 0 28 0 0 0 chr6 119083524 119083552 -70196002 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr6 119083596 119083630 -70195924 + AT_rich Low_complexity Low_complexity 1 34 0 310 273 139 56 chr6 119083730 119084140 -70195414 - L1ME LINE L1 -360 5761 5318 371 262 0 19 chr6 119085793 119085896 -70193658 - MLT1K LTR MaLR -43 545 445 1538 80 5 0 chr6 119086188 119086389 -70193165 + L1PA8 LINE L1 5971 6172 0 240 277 128 32 chr6 119086445 119086614 -70192940 + MIR3 SINE MIR 9 184 -62 1342 168 0 0 chr6 119087654 119087863 -70191691 - AluJb SINE Alu -16 296 88 467 200 224 0 chr6 119087864 119087989 -70191565 + MIR SINE MIR 104 256 -6 453 269 217 9 chr6 119088319 119088531 -70191023 - MIR SINE MIR -4 258 3 249 239 0 0 chr6 119089010 119089056 -70190498 + L2 LINE L2 3251 3296 -17 3884 117 0 6 chr6 119089406 119089936 -70189618 - MER1A DNA MER1_type 0 527 1 224 297 0 0 chr6 119090007 119090071 -70189483 + MIR SINE MIR 186 249 -13 1033 95 0 32 chr6 119090236 119090394 -70189160 + AluSx SINE Alu 1 153 -159 500 306 92 0 chr6 119091022 119091218 -70188336 - MIR SINE MIR -2 260 47 212 300 90 10 chr6 119093604 119093704 -70185850 - MER5B DNA MER1_type -69 109 2 367 261 80 45 chr6 119093928 119094104 -70185450 + MIR3 SINE MIR 26 207 -1 1127 170 72 64 chr6 119095081 119095457 -70184097 + Charlie1b DNA MER1_type 3 381 -142 224 325 115 19 chr6 119095591 119095748 -70183806 - L2 LINE L2 -182 3090 2919 279 79 0 0 chr6 119097248 119097286 -70182268 + (CA)n Simple_repeat Simple_repeat 2 39 0 235 312 65 51 chr6 119097301 119097439 -70182115 + MIR3 SINE MIR 4 143 -65 621 290 48 8 chr6 119098277 119098525 -70181029 - MER102a DNA MER1_type 0 330 73 267 296 14 0 chr6 119099355 119099426 -70180128 - MIR3 SINE MIR -27 181 110 2207 112 26 0 chr6 119099801 119100104 -70179450 + AluSp SINE Alu 1 311 -2 180 0 0 0 chr6 119100721 119100741 -70178813 + (T)n Simple_repeat Simple_repeat 1 20 0 262 244 269 38 chr6 119101274 119101434 -70178120 - MIR SINE MIR -50 212 16 193 279 101 0 chr6 119101582 119101661 -70177893 + L2 LINE L2 3225 3311 -2 371 223 41 66 chr6 119102660 119102781 -70176773 + MIR3 SINE MIR 85 202 -6 192 97 0 0 chr6 119103090 119103121 -70176433 + (GA)n Simple_repeat Simple_repeat 2 32 0 3054 166 18 15 chr6 119106371 119106980 -70172574 - L1MC3 LINE L1 -46 7739 7129 219 309 0 79 chr6 119107787 119107913 -70171641 - L2 LINE L2 -35 3237 3122 248 214 182 31 chr6 119108520 119108679 -70170875 - L1ME LINE L1 -213 5908 5726 2288 109 0 6 chr6 119109163 119109476 -70170078 - AluSq SINE Alu -2 311 1 219 36 0 0 chr6 119111017 119111045 -70168509 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 204 67 0 0 chr6 119111289 119111319 -70168235 + (CA)n Simple_repeat Simple_repeat 2 31 0 251 327 145 14 chr6 119111430 119111644 -70167910 + L3b LINE CR1 1223 1464 -119 2145 134 0 0 chr6 119111684 119111989 -70167565 - AluSx SINE Alu -4 308 4 26 64 0 0 chr6 119112065 119112112 -70167442 + AT_rich Low_complexity Low_complexity 1 47 0 1994 218 30 41 chr6 119112764 119113273 -70166281 + MLT1D LTR MaLR 3 505 0 531 45 0 0 chr6 119113599 119113665 -70165889 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 1885 153 0 39 chr6 119113665 119113972 -70165582 - AluJb SINE Alu -11 301 7 8703 99 11 2 chr6 119114247 119115525 -70164029 - HSMAR2 DNA Mariner 0 1302 13 712 205 109 0 chr6 119115526 119115682 -70163872 - FAM SINE Alu -2 173 1 308 189 0 54 chr6 119115682 119115756 -70163798 - AluJo SINE Alu -166 136 73 202 238 0 24 chr6 119115792 119115834 -70163720 + L2 LINE L2 3205 3245 -27 361 296 137 6 chr6 119115841 119116016 -70163538 + MIR SINE MIR 16 212 -50 403 314 166 9 chr6 119116169 119116392 -70163162 + L3b LINE CR1 1178 1435 -148 2537 50 0 0 chr6 119117977 119118280 -70161274 + AluY SINE Alu 1 303 -8 652 258 58 79 chr6 119118373 119118492 -70161062 + L2 LINE L2 2781 2901 -412 1280 178 146 4 chr6 119118492 119118782 -70160772 - AluJo SINE Alu 0 325 1 652 258 58 79 chr6 119118782 119119012 -70160542 + L2 LINE L2 2901 3125 -188 333 271 24 0 chr6 119119020 119119105 -70160449 + L2 LINE L2 3227 3313 0 2249 102 3 0 chr6 119119731 119120025 -70159529 - AluSx SINE Alu -17 295 1 604 289 63 46 chr6 119120220 119120677 -70158877 - MLT1J LTR MaLR -44 467 3 662 308 151 11 chr6 119120737 119121215 -70158339 + LTR67 LTR ERVL 3 547 -10 420 363 75 21 chr6 119121299 119121930 -70157624 + HERVL LTR ERVL 4681 5345 -309 1234 264 45 3 chr6 119122047 119122400 -70157154 + LTR16C LTR ERVL 5 372 -119 1528 284 70 13 chr6 119122411 119122879 -70156675 + MER115 DNA AcHobo 170 664 -29 192 77 0 0 chr6 119124669 119124695 -70154859 + (TC)n Simple_repeat Simple_repeat 1 26 0 309 278 52 0 chr6 119124837 119124934 -70154620 - MER117 DNA MER1_type -53 144 43 339 258 94 8 chr6 119124953 119125081 -70154473 - L3 LINE CR1 -286 1291 1153 1441 210 25 89 chr6 119125199 119125791 -70153763 - MER34 LTR ERV1 0 542 14 1917 151 3 3 chr6 119125942 119126233 -70153321 + AluSx SINE Alu 1 291 -21 23 33 0 0 chr6 119126648 119126678 -70152876 + AT_rich Low_complexity Low_complexity 1 30 0 365 278 13 40 chr6 119126804 119126955 -70152599 - L3 LINE CR1 -774 803 657 254 180 16 0 chr6 119127756 119127817 -70151737 + (TA)n Simple_repeat Simple_repeat 2 63 0 288 0 0 0 chr6 119127991 119128023 -70151531 + (TG)n Simple_repeat Simple_repeat 2 33 0 196 389 101 0 chr6 119128093 119128232 -70151322 + MIR SINE MIR 3 155 -107 496 201 169 45 chr6 119130249 119130403 -70149151 - MIR SINE MIR -11 251 79 396 344 11 43 chr6 119130496 119130682 -70148872 - MIR3 SINE MIR -15 193 14 301 254 79 16 chr6 119131347 119131424 -70148130 + MIR SINE MIR 125 214 -48 3674 156 117 37 chr6 119131424 119132186 -70147368 + LTR1B LTR ERV1 1 823 -3 301 254 79 16 chr6 119132186 119132234 -70147320 + MIR SINE MIR 214 258 -4 2256 143 16 14 chr6 119132343 119132769 -70146785 - L1MD1 LINE L1 0 6242 5816 27 49 0 0 chr6 119132887 119132928 -70146626 + AT_rich Low_complexity Low_complexity 1 41 0 880 257 4 40 chr6 119133591 119133798 -70145756 - L1ME1 LINE L1 -101 6065 5879 1646 173 40 0 chr6 119133798 119134076 -70145478 - AluJb SINE Alu -22 290 2 880 257 4 40 chr6 119134076 119134146 -70145408 - L1ME1 LINE L1 -287 5879 5808 1900 150 4 4 chr6 119134178 119134458 -70145096 + AluSx SINE Alu 3 282 -30 4823 259 126 21 chr6 119134484 119136430 -70143124 - L2 LINE L2 -12 3301 1155 279 240 211 19 chr6 119136485 119136693 -70142861 - MLT1H1 LTR MaLR 0 555 308 450 285 162 54 chr6 119137024 119137505 -70142049 - MLT1F LTR MaLR -8 534 2 615 273 84 8 chr6 119137507 119137756 -70141798 - L2 LINE L2 -2208 1106 839 1700 112 33 20 chr6 119137763 119138067 -70141487 + L1MA8 LINE L1 5980 6287 -4 249 222 0 0 chr6 119138104 119138158 -70141396 - L2 LINE L2 -2461 853 800 397 298 7 53 chr6 119138174 119138325 -70141229 + MER5B DNA MER1_type 32 175 -3 474 277 27 34 chr6 119138341 119138489 -70141065 - MIR SINE MIR -12 250 104 221 340 43 106 chr6 119139129 119139411 -70140143 + L2 LINE L2 3008 3271 -1 385 325 77 21 chr6 119139477 119139671 -70139883 - MIR SINE MIR -56 206 2 183 222 0 0 chr6 119140504 119140549 -70139005 + T-rich Low_complexity Low_complexity 1 45 0 384 320 72 5 chr6 119140716 119140910 -70138644 + MIR SINE MIR 1 212 -50 22 0 0 0 chr6 119141860 119141882 -70137672 + AT_rich Low_complexity Low_complexity 1 22 0 35 54 0 0 chr6 119142466 119142522 -70137032 + AT_rich Low_complexity Low_complexity 1 56 0 224 313 30 50 chr6 119143033 119143132 -70136422 - MIR SINE MIR -92 116 20 180 317 0 0 chr6 119143283 119143324 -70136230 + L2 LINE L2 3251 3291 -22 192 374 50 10 chr6 119143381 119143480 -70136074 + L2 LINE L2 3140 3242 -30 2461 152 58 4 chr6 119143548 119144010 -70135544 + MLT1D LTR MaLR 1 487 -18 2142 116 23 0 chr6 119144044 119144345 -70135209 - AluSx SINE Alu -4 308 1 189 0 0 0 chr6 119144860 119144881 -70134673 + (TG)n Simple_repeat Simple_repeat 2 22 0 1725 128 27 0 chr6 119145710 119146007 -70133547 - L1MB3 LINE L1 0 6183 5879 5500 136 45 53 chr6 119146041 119148180 -70131374 - L1MA7 LINE L1 0 6291 4174 660 188 0 0 chr6 119148184 119148296 -70131258 - AluJb SINE Alu -7 305 194 248 326 112 10 chr6 119148356 119148454 -70131100 + MLT1K LTR MaLR 140 247 -341 292 308 0 8 chr6 119148535 119148655 -70130899 + MLT1K LTR MaLR 470 588 0 1294 230 37 49 chr6 119149171 119149602 -70129952 + MLT1C LTR MaLR 34 459 -8 2222 111 10 0 chr6 119149663 119149960 -70129594 - AluSx SINE Alu -8 304 5 2373 93 6 0 chr6 119151592 119151903 -70127651 + AluSp SINE Alu 1 313 0 226 167 33 0 chr6 119152512 119152572 -70126982 + T-rich Low_complexity Low_complexity 4 65 0 249 33 0 0 chr6 119156530 119156560 -70122994 + (CA)n Simple_repeat Simple_repeat 2 31 0 34 24 0 0 chr6 119157014 119157055 -70122499 + AT_rich Low_complexity Low_complexity 1 41 0 834 154 0 0 chr6 119157056 119157179 -70122375 - FLAM_C SINE Alu -20 123 1 2622 145 12 2 chr6 119157649 119158048 -70121506 - MER57A LTR ERV1 0 403 1 2244 120 0 0 chr6 119158289 119158588 -70120966 + AluSq SINE Alu 1 299 -14 23 0 0 0 chr6 119159136 119159159 -70120395 + AT_rich Low_complexity Low_complexity 1 23 0 2219 117 3 0 chr6 119160905 119161205 -70118349 + AluSx SINE Alu 1 301 -11 1557 204 0 25 chr6 119161617 119161936 -70117618 - AluJb SINE Alu -1 311 1 225 0 0 0 chr6 119162127 119162152 -70117402 + (TA)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr6 119162152 119162172 -70117382 + (T)n Simple_repeat Simple_repeat 1 20 0 228 86 0 0 chr6 119164355 119164390 -70115164 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 960 264 47 8 chr6 119164868 119165103 -70114451 - MIR SINE MIR -15 247 4 190 325 113 26 chr6 119165353 119165584 -70113970 + L2 LINE L2 2235 2485 -829 181 0 69 0 chr6 119165802 119165831 -70113723 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 286 259 99 12 chr6 119165837 119165918 -70113636 - L2 LINE L2 -28 3285 3198 371 293 205 30 chr6 119166659 119167089 -70112465 - L2 LINE L2 0 3313 2809 474 224 0 0 chr6 119167684 119167769 -70111785 + FRAM/FAM SINE Alu 1 84 -92 199 273 0 0 chr6 119167793 119167837 -70111717 + L2 LINE L2 3251 3294 -19 770 282 119 13 chr6 119168174 119168591 -70110963 + L1ME3A LINE L1 5456 5915 -255 26 50 0 0 chr6 119168876 119168916 -70110638 + AT_rich Low_complexity Low_complexity 1 40 0 2372 81 0 0 chr6 119169103 119169398 -70110156 - AluSc SINE Alu -14 295 1 450 250 103 43 chr6 119173073 119173257 -70106297 - MIR SINE MIR -56 206 12 433 306 25 56 chr6 119173386 119173546 -70106008 - L2 LINE L2 0 3272 3118 297 271 75 37 chr6 119174833 119174940 -70104614 - L2 LINE L2 -1 3271 3161 507 240 180 7 chr6 119176494 119176644 -70102910 - MER5A DNA MER1_type 0 189 14 193 292 31 0 chr6 119176665 119176730 -70102824 - L2 LINE L2 -22 3291 3225 1767 126 0 30 chr6 119177524 119177787 -70101767 + AluSq SINE Alu 1 255 -58 1007 208 82 5 chr6 119177975 119178182 -70101372 - MER58A DNA MER1_type 0 224 2 318 50 0 0 chr6 119180320 119180360 -70099194 + (TG)n Simple_repeat Simple_repeat 1 40 0 213 94 0 0 chr6 119181634 119181666 -70097888 + (TG)n Simple_repeat Simple_repeat 2 33 0 2081 122 13 10 chr6 119182647 119182958 -70096596 - AluSx SINE Alu 0 312 1 186 259 86 62 chr6 119183644 119183725 -70095829 - MER5B DNA MER1_type -29 149 67 280 299 55 55 chr6 119183915 119184042 -70095512 - MIR SINE MIR -63 145 19 1093 301 139 35 chr6 119185763 119186315 -70093239 + L2 LINE L2 123 799 -2515 1645 161 73 0 chr6 119186315 119186588 -70092966 - AluJb SINE Alu -19 293 1 1093 301 139 35 chr6 119186588 119186895 -70092659 + L2 LINE L2 799 1072 -2242 1069 204 84 28 chr6 119186901 119187186 -70092368 + MLT1C LTR MaLR 6 306 -161 747 267 219 20 chr6 119187190 119187591 -70091963 + L2 LINE L2 1742 2222 -1092 6724 69 21 12 chr6 119187591 119188504 -70091050 + L1MA1 LINE L1 5381 6301 -1 1532 291 92 58 chr6 119188563 119189478 -70090076 + L2 LINE L2 2207 3156 -157 4592 56 4 11 chr6 119189478 119190031 -70089523 - L1PA10 LINE L1 -2 6166 5618 1532 291 92 58 chr6 119190031 119190190 -70089364 + L2 LINE L2 3156 3308 -5 360 275 45 34 chr6 119190242 119190420 -70089134 - MIR SINE MIR -2 260 81 225 342 13 13 chr6 119190601 119190677 -70088877 - MIR SINE MIR -160 102 27 354 320 139 52 chr6 119190818 119191662 -70087892 + L1MEd LINE L1 105 1021 -5098 2409 84 0 3 chr6 119192231 119192529 -70087025 - AluSq SINE Alu -16 297 1 2073 88 0 4 chr6 119192585 119192847 -70086707 - AluSq SINE Alu -52 261 1 402 314 81 0 chr6 119194613 119194737 -70084817 - L2 LINE L2 -18 3254 3121 403 325 67 91 chr6 119195074 119195659 -70083895 - L2 LINE L2 -539 2775 2205 240 204 0 0 chr6 119196497 119196546 -70083008 + L2 LINE L2 3264 3312 -1 304 303 34 79 chr6 119196656 119196714 -70082840 + MER5B DNA MER1_type 3 62 -116 1224 181 206 4 chr6 119196714 119196962 -70082592 + AluJo SINE Alu 2 299 -3 304 303 34 79 chr6 119196962 119197081 -70082473 + MER5B DNA MER1_type 62 172 -6 554 61 0 0 chr6 119197541 119197607 -70081947 - L1P4 LINE L1 -577 5586 5521 6946 86 12 0 chr6 119197897 119199373 -70080181 + L1PA13 LINE L1 4675 6163 0 483 310 43 0 chr6 119200478 119200662 -70078892 - LTR33 LTR ERVL -27 494 303 411 268 127 14 chr6 119200765 119200907 -70078647 - LTR33 LTR ERVL -358 163 6 559 254 164 47 chr6 119201010 119201242 -70078312 + MIR SINE MIR 3 261 -1 521 306 53 0 chr6 119201998 119202168 -70077386 - MIR SINE MIR -10 252 74 524 350 170 34 chr6 119202537 119203478 -70076076 - L2 LINE L2 0 3272 2206 410 220 63 75 chr6 119203477 119203636 -70075918 - MIR SINE MIR -1 261 105 * 229 244 0 0 chr6 119203755 119203796 -70075758 - MIR SINE MIR -16 246 206 315 268 78 112 chr6 119204296 119204475 -70075079 - MIR SINE MIR -12 250 78 2361 88 0 3 chr6 119205071 119205377 -70074177 - AluSg SINE Alu -5 305 1 2221 112 0 7 chr6 119205567 119205871 -70073683 - AluSq SINE Alu -11 302 1 1753 158 13 16 chr6 119206574 119206878 -70072676 + AluJo SINE Alu 6 308 -4 2214 123 0 10 chr6 119208367 119208676 -70070878 + AluSx SINE Alu 1 306 -6 272 371 102 28 chr6 119209037 119209320 -70070234 + L2 LINE L2 2956 3259 -13 4820 64 0 0 chr6 119209320 119209930 -70069624 + L1PA8 LINE L1 5562 6171 -1 1743 178 0 14 chr6 119210290 119210583 -70068971 - AluJb SINE Alu -23 289 1 261 298 174 20 chr6 119210758 119210976 -70068578 + MIR SINE MIR 13 262 0 2608 174 13 38 chr6 119211029 119211079 -70068475 + MER21A-int LTR ERV1 3655 3705 -486 1725 161 7 29 chr6 119211079 119211389 -70068165 + AluSq SINE Alu 1 303 -10 2608 174 13 38 chr6 119211389 119211889 -70067665 + MER21A-int LTR ERV1 3705 4191 0 1384 141 54 23 chr6 119211889 119212341 -70067213 + MER21A LTR ERV1 1 486 -377 2566 43 0 13 chr6 119213378 119213683 -70065871 - AluY SINE Alu -10 301 1 226 274 116 27 chr6 119213780 119213926 -70065628 + MER103 DNA DNA 1 159 -7 310 265 39 20 chr6 119215021 119215123 -70064431 + MIR SINE MIR 104 207 -55 2251 86 3 7 chr6 119215375 119215667 -70063887 + AluSx SINE Alu 18 308 -4 341 250 146 0 chr6 119218012 119218108 -70061446 + MIR3 SINE MIR 78 187 -21 271 164 30 45 chr6 119218455 119218522 -70061032 + GA-rich Low_complexity Low_complexity 3 68 0 180 0 0 0 chr6 119218622 119218642 -70060912 + (TG)n Simple_repeat Simple_repeat 2 21 0 286 334 203 43 chr6 119218703 119218772 -70060782 + L2 LINE L2 1758 1815 -1499 2325 84 0 10 chr6 119218772 119219071 -70060483 - AluSg SINE Alu -14 296 1 286 334 203 43 chr6 119219071 119219504 -70060050 + L2 LINE L2 1815 2177 -1137 2487 50 3 0 chr6 119219504 119219802 -70059752 - AluY SINE Alu -12 299 1 286 334 203 43 chr6 119219802 119220198 -70059356 + L2 LINE L2 2177 2801 -513 305 271 110 25 chr6 119220905 119220938 -70058616 + L2 LINE L2 3138 3167 -105 2325 78 7 3 chr6 119220938 119221233 -70058321 - AluSg SINE Alu -13 297 2 305 271 110 25 chr6 119221233 119221317 -70058237 + L2 LINE L2 3167 3265 -7 220 315 0 0 chr6 119224303 119224376 -70055178 + (CAT)n Simple_repeat Simple_repeat 1 73 0 361 320 131 28 chr6 119224454 119224899 -70054655 - MLT1K LTR MaLR -6 609 92 321 178 0 27 chr6 119224982 119225055 -70054499 - LTR67 LTR ERVL -58 499 429 1162 193 57 21 chr6 119225065 119225345 -70054209 - MLT1C LTR MaLR 0 467 178 213 410 67 9 chr6 119225689 119225794 -70053760 + L2 LINE L2 3122 3232 -40 25 0 0 0 chr6 119225908 119225933 -70053621 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr6 119226232 119226254 -70053300 + AT_rich Low_complexity Low_complexity 1 22 0 4686 127 18 0 chr6 119226804 119227600 -70051954 - L1P LINE L1 -3077 3069 2260 1591 199 3 14 chr6 119228036 119228327 -70051227 - AluJo SINE Alu -24 288 1 2591 129 43 17 chr6 119228405 119228822 -70050732 - MSTC LTR MaLR 0 428 1 264 263 8 93 chr6 119228845 119228963 -70050591 - MER102b DNA MER1_type -1 340 233 245 295 148 33 chr6 119231158 119231280 -70048274 - MIR3 SINE MIR -46 162 27 4442 198 27 35 chr6 119231545 119231645 -70047909 + MER45B DNA AcHobo 5 104 -1477 1642 133 8 0 chr6 119231645 119231886 -70047668 - AluSp SINE Alu -21 292 50 4442 198 27 35 chr6 119231886 119232408 -70047146 + MER45B DNA AcHobo 104 618 -963 1793 167 16 13 chr6 119232408 119232713 -70046841 + AluJb SINE Alu 1 306 -6 4442 198 27 35 chr6 119232713 119233124 -70046430 + MER45B DNA AcHobo 618 1031 -9 1485 215 105 46 chr6 119233131 119233606 -70045948 + MLT1D LTR MaLR 3 505 0 2331 122 0 0 chr6 119234409 119234721 -70044833 - AluSx SINE Alu 0 312 1 204 298 48 48 chr6 119234751 119234835 -70044719 - L2 LINE L2 -44 3228 3145 195 42 0 0 chr6 119234881 119234905 -70044649 + (CA)n Simple_repeat Simple_repeat 2 25 0 246 259 0 17 chr6 119235265 119235323 -70044231 + MIR SINE MIR 154 210 -52 2212 154 28 6 chr6 119235409 119235765 -70043789 - THE1B LTR MaLR 0 364 1 285 98 0 0 chr6 119236113 119236154 -70043400 + (CA)n Simple_repeat Simple_repeat 1 41 0 473 164 101 82 chr6 119236154 119236313 -70043241 + MER112 DNA MER1_type 88 249 -11 396 71 0 0 chr6 119238219 119238275 -70041279 + (TG)n Simple_repeat Simple_repeat 2 57 0 294 362 57 0 chr6 119238598 119238703 -70040851 + L2 LINE L2 3117 3227 -45 279 326 0 22 chr6 119238923 119239022 -70040532 - MIR SINE MIR -105 103 10 208 130 43 22 chr6 119239022 119239068 -70040486 + GA-rich Low_complexity Low_complexity 1 47 0 201 233 163 31 chr6 119239163 119239279 -70040275 - L2 LINE L2 0 3313 3139 1082 262 174 25 chr6 119239745 119240250 -70039304 + L2 LINE L2 2349 2777 -536 1069 180 23 14 chr6 119240250 119240467 -70039087 + MER20 DNA MER1_type 1 219 0 1082 262 174 25 chr6 119240467 119240782 -70038772 + L2 LINE L2 2777 3313 0 24 0 0 0 chr6 119241136 119241160 -70038394 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 119242681 119242702 -70036852 + AT_rich Low_complexity Low_complexity 1 21 0 233 296 0 14 chr6 119244544 119244615 -70034939 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 23 0 0 0 chr6 119245305 119245328 -70034226 + AT_rich Low_complexity Low_complexity 1 23 0 407 19 0 0 chr6 119245877 119245929 -70033625 - MADE1 DNA Mariner 0 80 29 582 322 62 25 chr6 119245962 119246204 -70033350 - MIR SINE MIR -11 251 1 24 0 0 0 chr6 119246272 119246296 -70033258 + AT_rich Low_complexity Low_complexity 1 24 0 198 292 80 26 chr6 119246483 119246596 -70032958 + MIR SINE MIR 19 137 -71 2486 110 39 8 chr6 119247903 119248267 -70031287 - THE1C LTR MaLR 0 375 1 10703 104 25 27 chr6 119248267 119249850 -70029704 - THE1C-int LTR MaLR 0 1580 1 2292 100 43 27 chr6 119249850 119249923 -70029631 - THE1C LTR MaLR 0 375 305 2254 95 0 7 chr6 119249923 119250217 -70029337 + AluSg SINE Alu 1 292 -18 2292 100 43 27 chr6 119250217 119250512 -70029042 - THE1C LTR MaLR -70 305 1 481 226 108 47 chr6 119251518 119251730 -70027824 + L2 LINE L2 3080 3304 -9 5628 23 0 0 chr6 119251813 119252462 -70027092 + L1PA3 LINE L1 5507 6155 0 203 179 0 0 chr6 119252465 119252504 -70027050 + A-rich Low_complexity Low_complexity 1 39 0 346 319 64 15 chr6 119252585 119252789 -70026765 + MARNA DNA Mariner 17 230 -356 1455 233 25 20 chr6 119252835 119253282 -70026272 - L1MEc LINE L1 -3269 2946 2498 * 2553 236 91 22 chr6 119253268 119253593 -70025961 - L1MEc LINE L1 -4485 1911 1610 2650 48 0 0 chr6 119253593 119253904 -70025650 - AluY SINE Alu 0 311 1 2553 236 91 22 chr6 119253904 119255008 -70024546 - L1MEc LINE L1 -4786 1610 377 1413 186 18 54 chr6 119255011 119255190 -70024364 + MER99 DNA DNA 496 660 -168 1673 174 14 0 chr6 119255190 119255494 -70024060 - AluJb SINE Alu 0 310 3 1413 186 18 54 chr6 119255494 119255647 -70023907 + MER99 DNA DNA 660 817 -11 276 276 0 0 chr6 119256094 119256170 -70023384 - HAL1b LINE L1 -706 642 567 450 238 35 7 chr6 119256283 119256426 -70023128 - HAL1b LINE L1 -931 417 271 1201 262 115 134 chr6 119257688 119258873 -70020681 - L2 LINE L2 -1 3312 2009 443 230 63 0 chr6 119258873 119258999 -70020555 + L1MD3 LINE L1 7862 7995 0 1201 262 115 134 chr6 119258999 119259298 -70020256 - L2 LINE L2 -1304 2009 1706 2746 16 0 3 chr6 119260557 119260869 -70018685 - AluYa5 SINE Alu 0 311 1 5469 159 20 7 chr6 119260986 119261346 -70018208 - L1PB1 LINE L1 -5 6862 6508 273 57 0 0 chr6 119261346 119261381 -70018173 + (TG)n Simple_repeat Simple_repeat 1 35 0 5469 159 20 7 chr6 119261381 119262750 -70016804 - L1PB1 LINE L1 -359 6508 5109 700 11 33 0 chr6 119262750 119262842 -70016712 + (TTTTA)n Simple_repeat Simple_repeat 4 98 0 5469 159 20 7 chr6 119262842 119263057 -70016497 - L1PB1 LINE L1 -1758 5109 4898 * 16300 148 34 12 chr6 119263054 119267186 -70012368 - L1PB1 LINE L1 -2481 4381 147 3120 72 9 5 chr6 119267196 119267628 -70011926 + MLT2A1 LTR ERVL 1 434 -10 24 0 0 0 chr6 119267640 119267664 -70011890 + AT_rich Low_complexity Low_complexity 1 24 0 1777 160 42 0 chr6 119269948 119270236 -70009318 - AluJo SINE Alu -12 300 1 241 288 18 9 chr6 119270356 119270467 -70009087 - L1M1 LINE L1 -480 5825 5714 4112 147 14 29 chr6 119270498 119271233 -70008321 + Tigger1 DNA MER2_type 1 724 -1694 * 7757 140 32 10 chr6 119271230 119271930 -70007624 + Tigger1 DNA MER2_type 1032 1715 -703 2225 124 0 3 chr6 119271930 119272228 -70007326 + AluSq SINE Alu 1 297 -16 7757 140 32 10 chr6 119272228 119272884 -70006670 + Tigger1 DNA MER2_type 1715 2418 0 282 252 112 65 chr6 119272944 119273158 -70006396 - L1ME3A LINE L1 -8 6162 5939 314 261 17 9 chr6 119273232 119273347 -70006207 - L1ME3A LINE L1 -1071 5075 4960 403 113 0 0 chr6 119274318 119274380 -70005174 - MER21A LTR ERV1 -358 573 512 323 323 99 45 chr6 119274382 119274590 -70004964 - L1ME LINE L1 -647 5515 5294 1702 191 3 17 chr6 119274590 119274884 -70004670 - AluJo SINE Alu -22 290 1 323 323 99 45 chr6 119274884 119274920 -70004634 - L1ME LINE L1 -868 5294 5261 258 256 0 49 chr6 119274965 119275047 -70004507 - MER94 DNA DNA -41 93 16 227 192 64 0 chr6 119275173 119275251 -70004303 - L1MC/D LINE L1 -2059 5749 5667 1136 239 90 35 chr6 119275283 119275684 -70003870 + MLT1J2 LTR MaLR 1 423 -27 1779 135 63 36 chr6 119275700 119276063 -70003491 + THE1C LTR MaLR 1 373 -2 2655 227 75 10 chr6 119276087 119277171 -70002383 + L1ME LINE L1 4455 5603 -563 1545 197 70 44 chr6 119277191 119277577 -70001977 - MSTD LTR MaLR 0 396 1 4813 228 42 57 chr6 119277586 119278935 -70000619 - MSTD-int LTR MaLR -26 1709 381 10830 162 35 24 chr6 119278957 119280993 -69998561 - ERVL LTR ERVL -613 5151 3094 522 186 10 0 chr6 119280994 119281096 -69998458 + MLT1B LTR MaLR 284 386 -4 5127 193 50 20 chr6 119281100 119283407 -69996147 + L1MB7 LINE L1 3791 6164 -20 2185 104 0 0 chr6 119283407 119283706 -69995848 - AluSg SINE Alu 0 299 1 2215 127 0 3 chr6 119285834 119286134 -69993420 + AluSx SINE Alu 1 299 -13 341 348 80 16 chr6 119286240 119286427 -69993127 - MIR SINE MIR -50 212 15 216 0 0 0 chr6 119287143 119287167 -69992387 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 199 313 42 42 chr6 119287991 119288087 -69991467 - L2 LINE L2 -19 3253 3158 610 274 52 44 chr6 119288564 119288812 -69990742 + MIR SINE MIR 13 262 0 222 205 0 0 chr6 119288965 119289004 -69990550 + CT-rich Low_complexity Low_complexity 4 42 0 1029 179 117 148 chr6 119291594 119291894 -69987660 + LTR50 LTR ERVL 1 309 -486 1569 164 104 4 chr6 119291894 119292162 -69987392 - AluJb SINE Alu -17 295 1 1029 179 117 148 chr6 119292162 119292679 -69986875 + LTR50 LTR ERVL 309 793 -2 180 77 0 0 chr6 119294118 119294144 -69985410 + (GA)n Simple_repeat Simple_repeat 1 26 0 412 252 68 0 chr6 119294864 119294967 -69984587 + MIR SINE MIR 73 182 -80 458 294 8 0 chr6 119295492 119295618 -69983936 - MER94 DNA DNA 0 134 8 203 0 37 0 chr6 119297242 119297269 -69982285 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 409 286 36 0 chr6 119297591 119297703 -69981851 - L2 LINE L2 -7 3306 3191 2342 113 3 0 chr6 119299288 119299597 -69979957 + AluY SINE Alu 1 310 -1 276 279 121 14 chr6 119300492 119300632 -69978922 - MLT1J1 LTR MaLR -287 159 5 320 371 0 0 chr6 119302061 119302177 -69977377 - MLT1J LTR MaLR -285 226 111 2447 200 51 15 chr6 119302325 119303096 -69976458 - L1M3 LINE L1 -449 5719 4886 2001 140 0 0 chr6 119303096 119303381 -69976173 - AluSc SINE Alu 0 309 25 2447 200 51 15 chr6 119303381 119303639 -69975915 - L1M3 LINE L1 -1282 4886 4639 218 200 29 57 chr6 119304275 119304345 -69975209 - MIR SINE MIR -14 248 181 193 229 257 40 chr6 119304416 119304591 -69974963 - MIR SINE MIR -40 222 10 640 334 115 47 chr6 119305025 119305953 -69973601 + L2 LINE L2 1879 2869 -445 347 311 165 24 chr6 119306190 119306396 -69973158 + L2 LINE L2 3034 3268 -4 285 296 9 153 chr6 119307971 119308312 -69971242 - L2 LINE L2 -3 3269 2978 261 151 55 14 chr6 119309719 119309792 -69969762 + T-rich Low_complexity Low_complexity 2 77 0 241 297 23 78 chr6 119309954 119310148 -69969406 - MIR SINE MIR -50 212 30 195 42 0 0 chr6 119310757 119310781 -69968773 + (TC)n Simple_repeat Simple_repeat 1 24 0 255 262 95 48 chr6 119311314 119311440 -69968114 + MIR SINE MIR 118 249 -13 201 94 0 0 chr6 119311641 119311673 -69967881 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 226 264 0 0 chr6 119311693 119311746 -69967808 + (TA)n Simple_repeat Simple_repeat 2 54 0 218 313 68 65 chr6 119312545 119312852 -69966702 - L2 LINE L2 -556 2758 2451 207 267 67 50 chr6 119313826 119313886 -69965668 - L2 LINE L2 -2 3270 3210 879 273 163 19 chr6 119314297 119314715 -69964839 + LTR33 LTR ERVL 44 521 0 191 241 149 11 chr6 119315868 119315955 -69963599 - L3b LINE CR1 -358 1225 1127 382 269 36 42 chr6 119316099 119316266 -69963288 - L2 LINE L2 -1 3312 3147 2321 62 45 0 chr6 119316294 119316586 -69962968 + AluY SINE Alu 1 305 -6 298 274 68 34 chr6 119316590 119316736 -69962818 - MIR SINE MIR -27 235 85 25 31 0 0 chr6 119316965 119316997 -69962557 + AT_rich Low_complexity Low_complexity 1 32 0 273 231 123 0 chr6 119318479 119318544 -69961010 - L2 LINE L2 0 3272 3200 1734 142 0 19 chr6 119318572 119318839 -69960715 + AluSx SINE Alu 28 289 -23 2053 157 33 43 chr6 119318904 119319298 -69960256 - MLT1B LTR MaLR 0 390 1 9245 55 6 0 chr6 119319974 119321039 -69958515 + MER11C LTR ERVK 1 1071 0 3860 102 2 6 chr6 119321039 119321566 -69957988 + HERVK11 LTR ERVK 1 525 -7428 2358 100 3 0 chr6 119322060 119322370 -69957184 + AluSp SINE Alu 2 312 -1 2301 117 3 0 chr6 119324740 119325049 -69954505 - AluSx SINE Alu -2 310 1 1881 55 111 0 chr6 119325399 119325652 -69953902 + L1MA1 LINE L1 6022 6302 0 1750 172 3 3 chr6 119325688 119325978 -69953576 - AluJb SINE Alu -22 290 1 26 50 0 0 chr6 119325978 119326018 -69953536 + AT_rich Low_complexity Low_complexity 1 40 0 260 273 30 0 chr6 119327582 119327648 -69951906 - L2 LINE L2 0 3313 3246 291 309 22 65 chr6 119328688 119328827 -69950727 - MIR3 SINE MIR -63 145 13 2228 248 133 2 chr6 119328995 119329599 -69949955 + Zaphod DNA AcHobo 2 684 -3347 455 281 18 0 chr6 119329667 119329781 -69949773 + MIR3 SINE MIR 70 185 -23 24 53 0 0 chr6 119329781 119329819 -69949735 + AT_rich Low_complexity Low_complexity 1 38 0 526 326 35 85 chr6 119329955 119330097 -69949457 - L2 LINE L2 0 3272 3124 1498 224 106 3 chr6 119330097 119330428 -69949126 - MLT1A1 LTR MaLR 0 365 1 526 326 35 85 chr6 119330428 119330687 -69948867 - L2 LINE L2 -148 3124 2891 298 343 69 33 chr6 119330765 119331010 -69948544 - L2 LINE L2 -535 2779 2526 209 303 158 0 chr6 119332996 119333072 -69946482 - L2 LINE L2 -22 3250 3163 555 29 0 0 chr6 119333474 119333543 -69946011 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 25 31 0 0 chr6 119333696 119333728 -69945826 + AT_rich Low_complexity Low_complexity 1 32 0 228 167 0 0 chr6 119333803 119333851 -69945703 - LTR66 LTR ERVL -161 449 402 404 67 17 0 chr6 119336111 119336171 -69943383 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr6 119336859 119336880 -69942674 + AT_rich Low_complexity Low_complexity 1 21 0 414 269 22 40 chr6 119337274 119337445 -69942109 + MIR SINE MIR 42 208 -54 4645 153 21 75 chr6 119337580 119337847 -69941707 + L1MA9 LINE L1 5354 5634 -678 1497 198 20 30 chr6 119337847 119338145 -69941409 + AluJo SINE Alu 1 295 -17 4645 153 21 75 chr6 119338145 119338346 -69941208 + L1MA9 LINE L1 5634 5844 -468 219 88 0 0 chr6 119338346 119338380 -69941174 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 4645 153 21 75 chr6 119338380 119338856 -69940698 + L1MA9 LINE L1 5844 6344 32 2361 81 7 0 chr6 119338856 119339154 -69940400 + AluSp SINE Alu 1 300 -13 471 35 0 0 chr6 119339154 119339211 -69940343 + (TA)n Simple_repeat Simple_repeat 1 57 0 4645 153 21 75 chr6 119339211 119339256 -69940298 + L1MA9 LINE L1 6246 6292 -20 184 380 11 11 chr6 119340189 119340281 -69939273 + MIR SINE MIR 80 171 -91 21 57 0 0 chr6 119340421 119340456 -69939098 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 119341399 119341420 -69938134 + AT_rich Low_complexity Low_complexity 1 21 0 557 290 122 25 chr6 119343160 119343398 -69936156 + MIR SINE MIR 2 262 0 189 0 0 0 chr6 119345241 119345262 -69934292 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2154 111 7 3 chr6 119345264 119345553 -69934001 - AluSx SINE Alu -22 290 1 266 167 0 0 chr6 119346638 119346686 -69932868 - MADE1 DNA Mariner 0 80 33 1171 76 0 19 chr6 119346690 119346848 -69932706 + AluSp/q SINE Alu 159 313 0 225 0 0 0 chr6 119349083 119349108 -69930446 + (T)n Simple_repeat Simple_repeat 1 25 0 1744 163 7 0 chr6 119349427 119349697 -69929857 + AluJb SINE Alu 1 272 -40 351 0 0 0 chr6 119349743 119349782 -69929772 + (CA)n Simple_repeat Simple_repeat 1 39 0 2234 110 0 0 chr6 119350108 119350407 -69929147 - AluY SINE Alu -12 299 1 28 86 0 0 chr6 119351078 119351148 -69928406 + AT_rich Low_complexity Low_complexity 1 70 0 1801 243 104 32 chr6 119351157 119351703 -69927851 - MLT1E LTR MaLR -5 588 1 1550 205 29 35 chr6 119352017 119352363 -69927191 - MLT1F LTR MaLR 0 542 199 269 243 9 84 chr6 119352879 119352986 -69926568 - MER90 LTR ERV1 -8 567 469 232 282 129 0 chr6 119353635 119353720 -69925834 + L2 LINE L2 3169 3264 -8 651 37 0 0 chr6 119353838 119353919 -69925635 - AluYa5/8 SINE Alu -1 310 230 277 323 0 0 chr6 119354883 119354948 -69924606 + MIR SINE MIR 60 124 -84 24 53 0 0 chr6 119354955 119354993 -69924561 + AT_rich Low_complexity Low_complexity 1 38 0 28 29 0 0 chr6 119355153 119355188 -69924366 + AT_rich Low_complexity Low_complexity 1 35 0 1745 141 193 11 chr6 119356129 119356491 -69923063 + MSTA LTR MaLR 1 428 0 233 170 0 38 chr6 119356754 119356807 -69922747 + CT-rich Low_complexity Low_complexity 1 51 0 412 263 73 75 chr6 119356807 119357047 -69922507 - MIR SINE MIR -19 243 7 2064 123 69 26 chr6 119357236 119357585 -69921969 + THE1B LTR MaLR 1 364 0 423 0 0 0 chr6 119358046 119358093 -69921461 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 31 0 0 chr6 119358093 119358125 -69921429 + AT_rich Low_complexity Low_complexity 1 32 0 1234 171 67 53 chr6 119358125 119358455 -69921099 + L1MD2 LINE L1 6010 7802 -6 279 345 13 96 chr6 119358460 119358689 -69920865 - L2 LINE L2 -96 3176 2967 1380 320 103 31 chr6 119358747 119359730 -69919824 - L2 LINE L2 -456 2858 1806 201 294 141 12 chr6 119360400 119360485 -69919069 - L2 LINE L2 -8 3264 3169 187 283 0 0 chr6 119360598 119360644 -69918910 - MIR SINE MIR -11 251 206 312 238 82 33 chr6 119360645 119360767 -69918787 + L1MC/D LINE L1 4586 4713 -1433 232 264 80 40 chr6 119360876 119361001 -69918553 + L1MC/D LINE L1 4901 5030 -1116 318 279 43 54 chr6 119361176 119361359 -69918195 + L1MC/D LINE L1 5290 5466 -899 1639 114 0 0 chr6 119361532 119361743 -69917811 - AluSq SINE Alu -102 211 1 406 218 32 48 chr6 119361931 119362055 -69917499 - L2 LINE L2 0 3313 3192 311 195 39 0 chr6 119362645 119362722 -69916832 + MER116 DNA Mariner 1 80 0 204 234 0 0 chr6 119362772 119362819 -69916735 - MIR SINE MIR -13 249 203 1223 241 85 22 chr6 119362854 119363315 -69916239 + Charlie4a DNA MER1_type 19 508 0 378 299 134 6 chr6 119363318 119363475 -69916079 - MIR SINE MIR -71 191 15 1693 214 64 5 chr6 119363880 119364253 -69915301 + MSTD LTR MaLR 1 395 -1 404 276 59 35 chr6 119364873 119365043 -69914511 + MIR SINE MIR 29 202 -60 443 298 82 29 chr6 119365573 119365781 -69913773 - MIR SINE MIR -16 246 28 222 206 82 27 chr6 119367000 119367073 -69912481 + MIR3 SINE MIR 94 170 -38 492 313 20 7 chr6 119368644 119368791 -69910763 - MIR SINE MIR -94 168 20 318 50 0 0 chr6 119369019 119369059 -69910495 + (TG)n Simple_repeat Simple_repeat 2 41 0 2113 199 21 11 chr6 119370157 119370629 -69908925 + L1ME1 LINE L1 5428 5904 -262 2255 87 7 3 chr6 119370651 119370950 -69908604 + AluSg SINE Alu 1 300 -10 276 340 177 32 chr6 119370954 119371395 -69908159 + L2 LINE L2 2125 2629 -685 619 251 66 18 chr6 119371634 119371801 -69907753 - MIR SINE MIR -52 210 36 2210 116 7 3 chr6 119371917 119372220 -69907334 - AluSx SINE Alu -8 304 1 22 0 0 0 chr6 119372508 119372530 -69907024 + AT_rich Low_complexity Low_complexity 1 22 0 394 265 38 23 chr6 119373184 119373316 -69906238 - MIR SINE MIR -1 261 128 962 273 50 56 chr6 119373530 119373583 -69905971 - L2 LINE L2 -1522 1792 1740 2065 126 75 40 chr6 119373583 119373861 -69905693 + THE1B LTR MaLR 1 295 -69 2112 130 0 23 chr6 119373861 119374161 -69905393 - AluSx SINE Alu -19 293 1 2065 126 75 40 chr6 119374161 119374231 -69905323 + THE1B LTR MaLR 295 361 -3 962 273 50 56 chr6 119374231 119374555 -69904999 - L2 LINE L2 -1574 1740 1417 657 149 0 0 chr6 119374609 119374723 -69904831 + (CA)n Simple_repeat Simple_repeat 2 115 0 250 257 14 0 chr6 119374723 119374793 -69904761 + L1MC5 LINE L1 7715 7785 -176 276 190 69 0 chr6 119374850 119374908 -69904646 - MIR SINE MIR 0 262 201 1665 185 2 87 chr6 119375717 119376143 -69903411 - MLT1B LTR MaLR 0 390 1 256 143 26 130 chr6 119377762 119377839 -69901715 + Tigger2 DNA MER2_type 1 69 -2649 * 2529 125 49 14 chr6 119377829 119378260 -69901294 + Tigger2 DNA MER2_type 2273 2718 0 1986 194 0 32 chr6 119378686 119379063 -69900491 + MLT1A1 LTR MaLR 1 365 0 1026 289 103 10 chr6 119379474 119379872 -69899682 - L2 LINE L2 -465 2849 2415 1970 247 51 3 chr6 119380560 119381130 -69898424 - L1ME3A LINE L1 -5 6165 5569 322 266 13 0 chr6 119381595 119381674 -69897880 + L2 LINE L2 3221 3300 -13 1087 267 132 36 chr6 119382492 119383153 -69896401 + L2 LINE L2 2599 3313 0 2611 241 85 35 chr6 119383597 119383886 -69895668 + L1MEc LINE L1 726 999 -5216 2209 105 3 23 chr6 119383886 119384192 -69895362 + AluSq SINE Alu 3 302 -11 2611 241 85 35 chr6 119384192 119385676 -69893878 + L1MEc LINE L1 999 2590 -3625 3650 138 36 0 chr6 119385676 119386257 -69893297 - MER7C DNA MER2_type 0 602 1 2611 241 85 35 chr6 119386257 119386779 -69892775 + L1MEc LINE L1 2590 3084 -3131 207 297 55 0 chr6 119386887 119386978 -69892576 + L2 LINE L2 1904 1999 -1315 274 341 52 0 chr6 119387080 119387215 -69892339 + L2 LINE L2 2661 2802 -512 222 37 0 0 chr6 119387341 119387368 -69892186 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 431 351 95 52 chr6 119389262 119390230 -69889324 - L2 LINE L2 -581 2733 1724 294 164 0 0 chr6 119390386 119390441 -69889113 + (CA)n Simple_repeat Simple_repeat 2 56 0 2247 226 75 15 chr6 119391268 119391918 -69887636 - L1ME3A LINE L1 -5 6165 5477 323 191 0 12 chr6 119392244 119392328 -69887226 + GA-rich Low_complexity Low_complexity 4 86 0 378 91 0 0 chr6 119393263 119393318 -69886236 + (CA)n Simple_repeat Simple_repeat 1 55 0 1934 153 7 7 chr6 119395442 119395770 -69883784 - AluSx SINE Alu 0 312 1 243 279 59 0 chr6 119395886 119395954 -69883600 - L2 LINE L2 0 3272 3201 2609 87 32 0 chr6 119396723 119397093 -69882461 + L1PA10 LINE L1 5783 6164 -4 227 343 124 7 chr6 119401240 119401377 -69878177 + MIR3 SINE MIR 45 197 -11 254 263 51 0 chr6 119401767 119401904 -69877650 + Charlie7 DNA MER1_type 2426 2569 -43 1704 128 33 23 chr6 119401926 119402231 -69877323 + MER1B DNA MER1_type 32 339 0 1025 216 0 0 chr6 119402243 119402442 -69877112 + MER58A DNA MER1_type 26 224 0 213 261 43 29 chr6 119402442 119402511 -69877043 - MIR3 SINE MIR -48 160 91 261 0 0 0 chr6 119402972 119403001 -69876553 + (TA)n Simple_repeat Simple_repeat 1 29 0 1050 266 128 5 chr6 119403878 119404306 -69875248 - L1ME3A LINE L1 -8 6162 5682 879 114 0 0 chr6 119404562 119404694 -69874860 + L1MA2 LINE L1 6173 6304 0 23 68 0 0 chr6 119404694 119404738 -69874816 + AT_rich Low_complexity Low_complexity 1 44 0 41 48 0 0 chr6 119404854 119404916 -69874638 + AT_rich Low_complexity Low_complexity 1 62 0 7290 76 0 4 chr6 119405016 119406042 -69873512 + L1P LINE L1 4014 5035 -1111 211 143 0 0 chr6 119606409 119606444 -69673110 + MIR SINE MIR 112 146 -62 25 31 0 0 chr6 119607370 119607402 -69672152 + AT_rich Low_complexity Low_complexity 1 32 0 21 40 0 40 chr6 119608189 119608213 -69671341 + AT_rich Low_complexity Low_complexity 1 24 -24 2285 76 0 14 chr6 119608213 119608534 -69671020 - AluSx SINE Alu 0 317 1 21 40 0 40 chr6 119608534 119608558 -69670996 + AT_rich Low_complexity Low_complexity 24 48 0 489 254 124 5 chr6 119608593 119608778 -69670776 - L1MC5 LINE L1 -68 7893 7687 2048 148 3 0 chr6 119608785 119609090 -69670464 + AluSx SINE Alu 1 306 -6 210 128 0 0 chr6 119612430 119612469 -69667085 + (TG)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr6 119613677 119613698 -69665856 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 119613915 119613936 -69665618 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr6 119615226 119615249 -69664305 + (T)n Simple_repeat Simple_repeat 1 23 0 26 0 0 0 chr6 119616871 119616897 -69662657 + AT_rich Low_complexity Low_complexity 1 26 0 265 292 62 26 chr6 119617314 119617427 -69662127 - MIR3 SINE MIR -87 121 5 1445 67 6 0 chr6 119618555 119618735 -69660819 - AluSq SINE Alu -132 181 1 1014 176 172 0 chr6 119619250 119619494 -69660060 + MLT1B LTR MaLR 1 286 -104 297 244 110 8 chr6 119622310 119622437 -69657117 + MIR SINE MIR 47 186 -76 356 193 34 34 chr6 119622639 119622727 -69656827 - MER5B DNA MER1_type -85 93 6 290 174 0 0 chr6 119624717 119624763 -69654791 - Alu SINE Alu -257 46 1 2215 148 76 69 chr6 119624775 119625287 -69654267 - MER4-int LTR ERV1 -4113 2485 1978 2280 69 38 3 chr6 119625287 119625576 -69653978 + AluSp SINE Alu 1 299 -14 2215 148 76 69 chr6 119625576 119625939 -69653615 - MER4-int LTR ERV1 -4620 1978 1399 1169 68 0 7 chr6 119625939 119626086 -69653468 - LTR10C LTR ERV1 0 591 446 195 253 0 80 chr6 119640486 119640561 -69638993 + L2 LINE L2 525 593 -2721 4019 143 25 34 chr6 119641585 119642094 -69637460 + Tigger1 DNA MER2_type 1712 2215 -203 1828 174 0 0 chr6 119642094 119642382 -69637172 - AluJo SINE Alu -24 288 1 4019 143 25 34 chr6 119642382 119642583 -69636971 + Tigger1 DNA MER2_type 2215 2416 -2 2567 50 0 0 chr6 119642838 119643137 -69636417 - AluY SINE Alu -12 299 1 1640 193 0 10 chr6 119643274 119643569 -69635985 + AluJo SINE Alu 11 302 -10 22 35 0 0 chr6 119643678 119643707 -69635847 + AT_rich Low_complexity Low_complexity 1 29 0 1402 91 0 11 chr6 119643891 119644078 -69635476 - L1PA3 LINE L1 -6 6149 5965 532 283 91 60 chr6 119644106 119644561 -69634993 - MLT1H LTR MaLR -36 513 1 2015 63 0 0 chr6 119644709 119644948 -69634606 + AluY SINE Alu 71 309 -2 985 338 62 41 chr6 119644998 119645711 -69633843 + L2 LINE L2 2010 2737 -577 450 321 26 38 chr6 119645952 119646217 -69633337 + L2 LINE L2 2838 3099 -173 471 304 74 27 chr6 119646271 119646419 -69633135 + LTR67 LTR ERVL 36 190 -367 240 349 9 0 chr6 119646608 119646714 -69632840 + LTR67 LTR ERVL 416 522 -35 313 309 36 36 chr6 119646876 119646986 -69632568 - L2 LINE L2 -12 3301 3192 1602 156 67 7 chr6 119647002 119647271 -69632283 + AluJo SINE Alu 3 287 -25 818 142 0 31 chr6 119647449 119647576 -69631978 + FLAM_C SINE Alu 2 124 -9 222 91 0 0 chr6 119647579 119647612 -69631942 + (CA)n Simple_repeat Simple_repeat 2 34 0 686 257 100 70 chr6 119649104 119649190 -69630364 + MIR SINE MIR 2 84 -178 777 179 135 0 chr6 119649190 119649346 -69630208 - MER45A DNA AcHobo 0 178 2 686 257 100 70 chr6 119649346 119649500 -69630054 + MIR SINE MIR 84 249 -13 2810 172 10 22 chr6 119650145 119650650 -69628904 - L1MC1 LINE L1 0 6333 5835 1094 176 0 0 chr6 119650892 119651068 -69628486 - AluJb SINE Alu -3 309 134 319 317 67 0 chr6 119651339 119651443 -69628111 - L2 LINE L2 -40 3232 3122 1622 220 84 2 chr6 119651610 119652051 -69627503 + Charlie4a DNA MER1_type 17 493 -15 456 298 69 102 chr6 119652495 119652958 -69626596 + L2 LINE L2 2824 3271 -1 608 235 15 85 chr6 119653042 119653242 -69626312 - MER112 DNA MER1_type -10 250 65 774 113 70 17 chr6 119653426 119653541 -69626013 - FRAM SINE Alu -19 157 37 1014 151 17 0 chr6 119653559 119653731 -69625823 + L1MC1 LINE L1 6014 6188 -145 2854 161 10 10 chr6 119654047 119654543 -69625011 + L1MC1 LINE L1 5481 5976 -357 576 159 0 0 chr6 119654543 119654631 -69624923 + AluS SINE Alu 2 89 -224 1937 158 9 15 chr6 119654948 119655074 -69624480 + L1MC1 LINE L1 5855 5980 -353 1931 161 0 0 chr6 119655074 119655365 -69624189 + AluSx SINE Alu 7 297 -15 1937 158 9 15 chr6 119655365 119655573 -69623981 + L1MC1 LINE L1 5980 6187 -146 784 152 51 7 chr6 119655739 119655877 -69623677 + L1MC1 LINE L1 6190 6333 0 419 231 166 58 chr6 119656035 119656130 -69623424 - LTR16B LTR ERVL -2 462 379 845 156 39 0 chr6 119656130 119656258 -69623296 + FLAM_C SINE Alu 1 133 0 2157 122 3 3 chr6 119656264 119656575 -69622979 + AluSx SINE Alu 1 311 -1 419 231 166 58 chr6 119656575 119656767 -69622787 - LTR16B LTR ERVL -89 375 136 1082 153 0 6 chr6 119657125 119657288 -69622266 + AluSx SINE Alu 1 162 -150 303 273 23 0 chr6 119657295 119657383 -69622171 + MIR SINE MIR 100 189 -73 304 202 43 11 chr6 119657383 119657477 -69622077 + (TA)n Simple_repeat Simple_repeat 2 98 0 211 176 0 0 chr6 119657480 119657514 -69622040 + MIR SINE MIR 216 249 -13 262 132 0 0 chr6 119657531 119657569 -69621985 + AluSp SINE Alu 133 170 -133 266 237 117 40 chr6 119657983 119658145 -69621409 - MLT1L LTR MaLR -341 170 1 1872 144 31 0 chr6 119659205 119659497 -69620057 - AluJb SINE Alu -11 301 1 4999 103 18 8 chr6 119659593 119660303 -69619251 - L1MA2 LINE L1 0 6304 5588 445 314 69 37 chr6 119660308 119660658 -69618896 + MARNA DNA Mariner 37 397 -189 360 266 78 52 chr6 119661799 119661953 -69617601 + MIR SINE MIR 50 207 -55 2094 128 0 10 chr6 119661960 119662258 -69617296 + AluSc SINE Alu 1 295 -14 362 245 118 33 chr6 119662258 119662409 -69617145 + L1ME1 LINE L1 6014 6184 0 202 220 100 0 chr6 119662421 119662471 -69617083 + MIR SINE MIR 195 249 -13 405 294 20 0 chr6 119662799 119662901 -69616653 - L2 LINE L2 0 3272 3169 216 0 0 0 chr6 119662908 119662932 -69616622 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1571 73 5 0 chr6 119662974 119663166 -69616388 - L1PA14 LINE L1 -6 6155 5963 2071 139 3 0 chr6 119663169 119663457 -69616097 - AluSx SINE Alu -23 289 1 855 227 12 0 chr6 119663462 119663625 -69615929 + Tigger6 DNA MER2_type 1427 1591 -6 244 245 181 53 chr6 119664441 119664505 -69615049 + MIR SINE MIR 45 126 -82 2590 53 0 0 chr6 119664505 119664806 -69614748 - AluY SINE Alu -10 301 1 244 245 181 53 chr6 119664806 119664835 -69614719 + MIR SINE MIR 126 150 -58 873 224 112 0 chr6 119664971 119665167 -69614387 + MER58A DNA MER1_type 4 221 -3 30 0 0 0 chr6 119665378 119665408 -69614146 + AT_rich Low_complexity Low_complexity 1 30 0 241 321 128 0 chr6 119665772 119665881 -69613673 + L2 LINE L2 2929 3051 -221 410 331 29 29 chr6 119665891 119666030 -69613524 - L2 LINE L2 -5 3267 3129 227 286 43 14 chr6 119666160 119666230 -69613324 + L2 LINE L2 3236 3307 -6 23 0 0 0 chr6 119666655 119666678 -69612876 + AT_rich Low_complexity Low_complexity 1 23 0 353 272 43 0 chr6 119667952 119668044 -69611510 - L1MC5 LINE L1 -60 7901 7806 401 325 25 0 chr6 119668249 119668369 -69611185 - L2 LINE L2 -25 3247 3125 493 328 93 76 chr6 119668450 119668847 -69610707 - L2 LINE L2 -341 2973 2570 784 305 23 12 chr6 119668849 119669105 -69610449 - L2 LINE L2 -158 3155 2897 409 203 0 0 chr6 119669279 119669348 -69610206 - U4 snRNA snRNA -76 69 1 1377 183 56 11 chr6 119669443 119669728 -69609826 - MLT1A1 LTR MaLR -67 298 1 643 322 131 39 chr6 119669728 119670287 -69609267 - L2 LINE L2 -401 2913 2304 23 0 0 0 chr6 119670715 119670738 -69608816 + AT_rich Low_complexity Low_complexity 1 23 0 711 218 32 51 chr6 119671015 119671231 -69608323 + pTR5 LTR ERV1 743 954 -1484 2244 85 25 0 chr6 119671724 119672007 -69607547 + AluSq SINE Alu 2 291 -22 350 162 0 18 chr6 119672010 119672088 -69607466 + AluSp/q SINE Alu 240 301 -2 21 0 0 0 chr6 119673893 119673914 -69605640 + AT_rich Low_complexity Low_complexity 1 21 0 1879 139 4 0 chr6 119674847 119675127 -69604427 + AluJo SINE Alu 1 281 -31 234 0 0 0 chr6 119675132 119675158 -69604396 + (CA)n Simple_repeat Simple_repeat 2 27 0 2381 84 3 0 chr6 119676373 119676671 -69602883 - AluSc SINE Alu -10 299 1 21 0 0 0 chr6 119677335 119677356 -69602198 + AT_rich Low_complexity Low_complexity 1 21 0 205 238 138 0 chr6 119678333 119678413 -69601141 + L2 LINE L2 1172 1262 -2052 399 235 17 17 chr6 119680629 119680748 -69598806 - L1MC4 LINE L1 0 8042 7924 317 203 0 0 chr6 119682705 119682764 -69596790 - MIR SINE MIR -4 258 200 2510 79 3 0 chr6 119684431 119684736 -69594818 - AluSp SINE Alu -7 306 1 305 282 58 52 chr6 119686267 119686441 -69593113 + MIR3 SINE MIR 31 205 -3 263 71 24 0 chr6 119687903 119687945 -69591609 + (TA)n Simple_repeat Simple_repeat 2 44 0 192 97 0 0 chr6 119688737 119688768 -69590786 + (T)n Simple_repeat Simple_repeat 1 31 0 204 40 0 0 chr6 119689317 119689342 -69590212 + (A)n Simple_repeat Simple_repeat 1 25 0 1871 161 7 3 chr6 119690749 119691059 -69588495 - AluJo SINE Alu -1 311 1 270 0 0 0 chr6 119692078 119692108 -69587446 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 414 0 0 0 chr6 119692107 119692153 -69587401 + (GA)n Simple_repeat Simple_repeat 1 46 0 307 325 9 9 chr6 119693016 119693130 -69586424 + L3b LINE CR1 1250 1363 -220 345 366 0 8 chr6 119693865 119693999 -69585555 + MIR SINE MIR 18 150 -58 246 176 0 0 chr6 119694384 119694435 -69585119 + T-rich Low_complexity Low_complexity 1 51 0 2364 91 0 0 chr6 119695971 119696268 -69583286 - AluSc SINE Alu -12 297 1 264 337 21 55 chr6 119696382 119696540 -69583014 - MIR3 SINE MIR -62 146 12 1572 120 4 21 chr6 119698315 119698450 -69581104 + MER30 DNA MER1_type 2 133 -97 2170 109 0 3 chr6 119698450 119698743 -69580811 + AluSg SINE Alu 1 292 -18 1572 120 4 21 chr6 119698743 119698840 -69580714 + MER30 DNA MER1_type 133 230 0 777 200 54 11 chr6 119699069 119699254 -69580300 - L1MB2 LINE L1 0 6171 5979 368 228 43 0 chr6 119700660 119700752 -69578802 - MIR SINE MIR -70 192 97 243 280 56 63 chr6 119701239 119701382 -69578172 - L2 LINE L2 0 3313 3172 2105 135 0 0 chr6 119701735 119702024 -69577530 + AluSx SINE Alu 1 289 -23 419 299 95 0 chr6 119702384 119702521 -69577033 + MIR3 SINE MIR 30 179 -29 186 250 0 18 chr6 119704066 119704122 -69575432 - L2 LINE L2 -1 3312 3258 759 261 45 8 chr6 119704221 119704502 -69575052 + L1MC4a LINE L1 5666 5825 -326 23 0 0 0 chr6 119704670 119704693 -69574861 + AT_rich Low_complexity Low_complexity 1 23 0 564 246 86 32 chr6 119705170 119705357 -69574197 - MIR3 SINE MIR -3 205 9 21 0 0 0 chr6 119705820 119705841 -69573713 + AT_rich Low_complexity Low_complexity 1 21 0 1730 151 46 0 chr6 119705846 119706131 -69573423 + AluSx SINE Alu 1 298 -14 2182 107 0 0 chr6 119707517 119707815 -69571739 + AluSx SINE Alu 1 298 -14 2208 113 0 0 chr6 119708273 119708584 -69570970 + AluSq SINE Alu 1 311 -2 2167 103 0 0 chr6 119708786 119709077 -69570477 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr6 119709077 119709098 -69570456 + AT_rich Low_complexity Low_complexity 1 21 0 332 169 31 0 chr6 119710255 119710320 -69569234 - L1MC5 LINE L1 -64 7897 7831 2064 94 50 3 chr6 119711007 119711305 -69568249 - AluSx SINE Alu 0 312 1 207 0 0 0 chr6 119711457 119711480 -69568074 + (T)n Simple_repeat Simple_repeat 1 23 0 1683 168 0 7 chr6 119711673 119711959 -69567595 + AluJo SINE Alu 1 284 -28 335 273 125 8 chr6 119712423 119712551 -69567003 + L2 LINE L2 3169 3311 -2 782 117 32 80 chr6 119713510 119713593 -69565961 - Charlie5 DNA MER1_type 0 2624 2539 2188 88 0 10 chr6 119713593 119713898 -69565656 + AluSx SINE Alu 10 311 -1 782 117 32 80 chr6 119713898 119714002 -69565552 - Charlie5 DNA MER1_type -85 2539 2446 1977 91 58 0 chr6 119714003 119714279 -69565275 + AluSq SINE Alu 1 292 -21 2390 54 0 35 chr6 119716768 119717082 -69562472 + AluY SINE Alu 1 303 -8 61 0 0 0 chr6 119717239 119717300 -69562254 + AT_rich Low_complexity Low_complexity 1 61 0 228 309 0 0 chr6 119717365 119717433 -69562121 - L1ME4a LINE L1 -95 6026 5959 432 266 161 31 chr6 119717601 119717793 -69561761 + MIR SINE MIR 9 225 -37 222 371 33 20 chr6 119717788 119717939 -69561615 + L2 LINE L2 2605 2757 -557 * 299 281 201 7 chr6 119717953 119718092 -69561462 + MER117 DNA MER1_type 6 171 -26 432 233 209 51 chr6 119718220 119718512 -69561042 + L2 LINE L2 2951 3288 -25 225 163 0 0 chr6 119719321 119719364 -69560190 + L1MC4 LINE L1 6661 6703 -1339 292 206 9 9 chr6 119719365 119719458 -69560096 + (TA)n Simple_repeat Simple_repeat 1 96 -11 2174 100 0 7 chr6 119719458 119719759 -69559795 - AluSg SINE Alu -11 299 1 292 206 9 9 chr6 119719759 119719772 -69559782 + (TA)n Simple_repeat Simple_repeat 95 107 0 3371 181 30 16 chr6 119720123 119720765 -69558789 - MER82 DNA MER2_type 0 653 3 1974 93 48 3 chr6 119721162 119721451 -69558103 + AluSg SINE Alu 1 302 -8 505 326 114 13 chr6 119721501 119721737 -69557817 - MIR SINE MIR 0 262 3 300 285 62 31 chr6 119722411 119722541 -69557013 + MIR SINE MIR 54 187 -75 679 268 160 5 chr6 119723374 119723587 -69555967 + MIR SINE MIR 13 258 -4 234 0 0 0 chr6 119724678 119724704 -69554850 + (TA)n Simple_repeat Simple_repeat 1 26 0 2053 108 24 0 chr6 119724727 119725015 -69554539 - AluSq SINE Alu -16 297 3 233 330 3 0 chr6 119725226 119725328 -69554226 + MIR SINE MIR 70 173 -35 360 290 26 73 chr6 119725564 119725764 -69553790 + MIR SINE MIR 21 207 -55 232 163 0 0 chr6 119726888 119726931 -69552623 + (ATGGTG)n Simple_repeat Simple_repeat 5 47 0 399 305 27 18 chr6 119727625 119727788 -69551766 - MIR SINE MIR -63 145 29 687 310 162 12 chr6 119728442 119728949 -69550605 - MLT1K LTR MaLR -4 584 2 414 292 316 39 chr6 119729558 119730254 -69549300 + L3 LINE CR1 662 1550 -27 464 221 105 75 chr6 119730313 119730416 -69549138 - ORSL DNA AcHobo 0 275 177 844 165 0 0 chr6 119730416 119730549 -69549005 + FLAM_C SINE Alu 1 133 0 464 221 105 75 chr6 119730549 119730712 -69548842 - ORSL DNA AcHobo -98 177 1 1993 125 3 7 chr6 119730764 119731067 -69548487 - AluSg SINE Alu -8 302 1 1645 173 0 0 chr6 119731263 119731541 -69548013 + AluSx SINE Alu 3 280 -32 1556 188 19 56 chr6 119731542 119731919 -69547635 - L1MB4 LINE L1 -80 6100 5738 2203 138 30 28 chr6 119731920 119732283 -69547271 + THE1B LTR MaLR 1 364 0 552 151 0 0 chr6 119732283 119732369 -69547185 + THE1B-int LTR MaLR 1 86 -1494 * 2897 62 5 3 chr6 119732368 119732736 -69546818 + THE1B-int LTR MaLR 1212 1580 0 2126 134 34 42 chr6 119732736 119733093 -69546461 + THE1B LTR MaLR 1 354 -10 1009 183 0 0 chr6 119733095 119733264 -69546290 - L1MB4 LINE L1 -439 5741 5573 355 280 129 38 chr6 119733617 119733803 -69545751 - L1ME3A LINE L1 0 6170 5968 2143 114 0 9 chr6 119733821 119734136 -69545418 - AluSx SINE Alu 0 312 1 527 262 78 15 chr6 119734194 119734400 -69545154 - L1ME3A LINE L1 -220 5950 5732 445 133 36 12 chr6 119734423 119734506 -69545048 - LTR54 LTR ERV1 -30 480 396 233 252 87 70 chr6 119734735 119734850 -69544704 + MLT1K LTR MaLR 182 298 -290 2041 108 13 10 chr6 119736102 119736408 -69543146 - AluSx SINE Alu -5 307 1 219 161 0 0 chr6 119737496 119737552 -69542002 + (TG)n Simple_repeat Simple_repeat 2 57 0 1754 160 14 0 chr6 119738364 119738658 -69540896 - AluJo SINE Alu -14 298 1 1031 237 32 16 chr6 119738949 119739198 -69540356 - MLT1E2 LTR MaLR -15 611 359 275 148 16 82 chr6 119739297 119739358 -69540196 - MLT1E3 LTR MaLR -567 57 1 367 263 11 11 chr6 119740049 119740144 -69539410 + MIR SINE MIR 69 163 -99 623 241 0 62 chr6 119741688 119741850 -69537704 + MIR3 SINE MIR 57 208 0 283 244 211 0 chr6 119741874 119741964 -69537590 - L2 LINE L2 -2 3311 3203 924 160 43 32 chr6 119742034 119742151 -69537403 - L1MEc LINE L1 -6174 222 101 243 0 0 0 chr6 119742151 119742178 -69537376 + (TG)n Simple_repeat Simple_repeat 2 28 0 924 160 43 32 chr6 119742178 119742247 -69537307 - L1MEc LINE L1 -6295 101 34 1829 157 10 0 chr6 119742254 119742547 -69537007 - AluJo SINE Alu -16 296 1 275 229 48 0 chr6 119742555 119742638 -69536916 - Charlie7 DNA MER1_type -16 2596 2510 412 174 33 41 chr6 119742654 119742775 -69536779 - Charlie7 DNA MER1_type -2453 159 40 1625 199 50 65 chr6 119743230 119743632 -69535922 - MSTD LTR MaLR 0 396 1 28 29 0 0 chr6 119745364 119745399 -69534155 + AT_rich Low_complexity Low_complexity 1 35 0 2120 118 0 3 chr6 119745602 119745908 -69533646 + AluSq SINE Alu 1 305 -8 1120 173 5 15 chr6 119746374 119746576 -69532978 + AluJb SINE Alu 1 200 -112 632 242 42 12 chr6 119746653 119746764 -69532790 - MIR SINE MIR -1 261 155 1501 188 36 4 chr6 119746764 119747041 -69532513 - AluJo SINE Alu -26 286 1 225 65 0 0 chr6 119747041 119747072 -69532482 + (TTA)n Simple_repeat Simple_repeat 2 32 0 632 242 42 12 chr6 119747072 119747124 -69532430 - MIR SINE MIR -106 156 92 314 172 159 62 chr6 119748198 119748303 -69531251 - MIR SINE MIR -67 141 42 422 254 91 98 chr6 119748379 119748929 -69530625 + MLT1K LTR MaLR 20 565 -23 1767 150 17 3 chr6 119749313 119749606 -69529948 - AluJb SINE Alu -15 297 1 183 324 0 29 chr6 119750131 119750199 -69529355 - L2 LINE L2 0 3313 3248 203 327 165 28 chr6 119750246 119750567 -69528987 + L2 LINE L2 2601 2965 -349 352 229 212 24 chr6 119750567 119750737 -69528817 + MER112 DNA MER1_type 1 202 -58 573 345 62 21 chr6 119750747 119751086 -69528468 + L2 LINE L2 2961 3313 0 4060 175 97 28 chr6 119751124 119751450 -69528104 + L1MC3 LINE L1 6732 7034 -751 2314 123 26 0 chr6 119751450 119751801 -69527753 + MER46B DNA MER2_type 1 235 -1 4060 175 97 28 chr6 119751801 119752449 -69527105 + L1MC3 LINE L1 7034 7774 -11 1788 159 0 7 chr6 119752454 119752749 -69526805 + AluJo SINE Alu 6 298 -14 180 77 0 0 chr6 119752969 119752995 -69526559 + (GA)n Simple_repeat Simple_repeat 2 27 0 573 262 32 0 chr6 119753067 119753193 -69526361 + L2 LINE L2 3184 3313 0 275 293 32 24 chr6 119753727 119753850 -69525704 + L1MC4a LINE L1 5801 5924 -1884 228 67 0 0 chr6 119753957 119753987 -69525567 + (GA)n Simple_repeat Simple_repeat 1 30 0 2060 142 52 0 chr6 119754346 119754676 -69524878 + MER7A DNA MER2_type 1 345 -1 765 148 0 37 chr6 119755032 119755167 -69524387 - FLAM_A SINE Alu -3 130 1 1770 80 0 17 chr6 119755487 119755724 -69523830 + AluSg SINE Alu 1 233 -77 532 72 0 0 chr6 119755742 119755811 -69523743 + AluSc SINE Alu 219 287 -22 1973 113 0 0 chr6 119755990 119756256 -69523298 - AluSq SINE Alu -5 308 43 184 304 61 28 chr6 119756594 119756775 -69522779 + L2 LINE L2 2092 2278 -1036 330 247 206 10 chr6 119756786 119756883 -69522671 - L2 LINE L2 -1 3312 3197 774 193 32 21 chr6 119757004 119757191 -69522363 - MER53 DNA DNA 0 189 1 370 339 89 40 chr6 119757272 119757523 -69522031 - L2 LINE L2 -341 2973 2693 2255 97 7 0 chr6 119757523 119757823 -69521731 + AluSc SINE Alu 1 302 -7 370 339 89 40 chr6 119757823 119757975 -69521579 - L2 LINE L2 -621 2693 2550 283 282 37 68 chr6 119758142 119758305 -69521249 + MER5B DNA MER1_type 21 178 0 192 351 70 54 chr6 119758784 119759043 -69520511 + L2 LINE L2 2618 2880 -434 234 283 273 0 chr6 119759211 119759310 -69520244 - L2 LINE L2 -4 3268 3143 638 262 149 0 chr6 119759337 119759551 -69520003 + MIR SINE MIR 13 258 -4 2034 283 119 24 chr6 119759557 119760682 -69518872 - L2 LINE L2 -138 3175 1944 2037 117 10 16 chr6 119761114 119761423 -69518131 + AluSg SINE Alu 1 307 -3 273 309 98 16 chr6 119762449 119762572 -69516982 + L3 LINE CR1 1179 1311 -266 229 191 0 0 chr6 119762653 119762695 -69516859 + MER103 DNA DNA 1 42 -124 26 50 0 0 chr6 119764700 119764740 -69514814 + AT_rich Low_complexity Low_complexity 1 40 0 281 307 0 27 chr6 119769220 119769295 -69510259 + L2 LINE L2 3225 3297 -16 1821 109 21 100 chr6 119769548 119769887 -69509667 + AluJb SINE Alu 1 312 0 754 197 72 81 chr6 119770201 119770384 -69509170 - L1MC4 LINE L1 -200 7842 7662 1043 188 173 59 chr6 119770384 119770708 -69508846 - MLT1A1 LTR MaLR 0 365 5 754 197 72 81 chr6 119770708 119770844 -69508710 - L1MC4 LINE L1 -380 7662 7526 241 290 187 19 chr6 119771183 119771290 -69508264 + MIR SINE MIR 22 146 -62 292 275 87 74 chr6 119771307 119771456 -69508098 - MER5B DNA MER1_type -3 175 25 246 287 133 21 chr6 119771735 119771878 -69507676 + MIR SINE MIR 72 230 -32 23 33 0 0 chr6 119772225 119772255 -69507299 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr6 119773704 119773728 -69505826 + AT_rich Low_complexity Low_complexity 1 24 0 1813 114 8 0 chr6 119774751 119775013 -69504541 - AluSq SINE Alu 0 313 50 216 0 0 0 chr6 119776034 119776058 -69503496 + (A)n Simple_repeat Simple_repeat 1 24 0 257 196 18 18 chr6 119776150 119776206 -69503348 - U6 snRNA snRNA -9 98 43 242 326 51 10 chr6 119776584 119776682 -69502872 + MIR3 SINE MIR 2 103 -105 1793 135 4 0 chr6 119776702 119776962 -69502592 + AluSx SINE Alu 36 296 -16 606 241 9 0 chr6 119777465 119777581 -69501973 + FLAM_C SINE Alu 1 117 -16 2214 149 52 28 chr6 119777657 119778079 -69501475 + MSTB1 LTR MaLR 1 432 0 3011 222 73 31 chr6 119778637 119778720 -69500834 + L1ME1 LINE L1 5109 5187 -979 1950 143 3 0 chr6 119778720 119779013 -69500541 + AluSx SINE Alu 1 294 -18 3011 222 73 31 chr6 119779013 119779891 -69499663 + L1ME1 LINE L1 5187 6113 -53 28 48 0 0 chr6 119780650 119780692 -69498862 + AT_rich Low_complexity Low_complexity 1 42 0 2213 80 7 20 chr6 119780703 119781003 -69498551 - AluY SINE Alu -15 296 1 1587 160 62 19 chr6 119781128 119781453 -69498101 + MER2 DNA MER2_type 3 341 -3 300 53 0 0 chr6 119781494 119781532 -69498022 + (TG)n Simple_repeat Simple_repeat 2 39 0 24 32 0 0 chr6 119782023 119782054 -69497500 + AT_rich Low_complexity Low_complexity 1 31 0 565 238 72 140 chr6 119782397 119782888 -69496666 + L1MC4 LINE L1 7401 7833 -209 1970 133 0 7 chr6 119782888 119783189 -69496365 - AluSx SINE Alu -13 299 1 565 238 72 140 chr6 119783189 119783382 -69496172 + L1MC4 LINE L1 7833 8038 -4 194 222 111 14 chr6 119783588 119783660 -69495894 + MIR SINE MIR 114 192 -70 892 168 147 5 chr6 119783830 119784021 -69495533 - AluJo SINE Alu -9 303 86 2347 64 0 13 chr6 119784154 119784466 -69495088 + L1PA7 LINE L1 5844 6151 -3 1784 153 48 58 chr6 119784713 119785092 -69494462 + THE1C LTR MaLR 1 375 0 703 156 67 0 chr6 119785637 119785772 -69493782 + L1MA4 LINE L1 6148 6291 -9 1639 162 20 99 chr6 119786296 119786635 -69492919 + MLT1A1 LTR MaLR 3 308 -57 1869 90 12 8 chr6 119786635 119786891 -69492663 + AluSq SINE Alu 44 300 -13 1639 162 20 99 chr6 119786891 119786945 -69492609 + MLT1A1 LTR MaLR 308 365 0 775 165 0 0 chr6 119787654 119787787 -69491767 + FLAM_C SINE Alu 11 143 0 2196 98 0 0 chr6 119788037 119788323 -69491231 + AluSg SINE Alu 1 286 -24 246 307 53 13 chr6 119788329 119788404 -69491150 + MIR SINE MIR 49 126 -136 226 257 20 50 chr6 119788404 119788505 -69491049 - L1MC3 LINE L1 -1117 6668 6571 5613 169 34 23 chr6 119788838 119790089 -69489465 + L1MD2 LINE L1 5099 6357 -2 427 237 197 20 chr6 119790120 119790272 -69489282 + MER5A DNA MER1_type 10 188 -1 802 246 31 48 chr6 119790869 119791097 -69488457 + MIR SINE MIR 29 252 -10 2092 95 0 4 chr6 119791654 119791928 -69487626 + AluSg SINE Alu 1 273 -37 2061 96 6 32 chr6 119792584 119792898 -69486656 + AluSx SINE Alu 1 306 -6 333 245 80 71 chr6 119793898 119794097 -69485457 + MIR SINE MIR 28 226 -36 22 0 0 0 chr6 119795666 119795688 -69483866 + AT_rich Low_complexity Low_complexity 1 22 0 4091 176 41 22 chr6 119795865 119796956 -69482598 + L1MB7 LINE L1 5022 6132 -52 762 170 82 14 chr6 119796964 119797111 -69482443 + FAM SINE Alu 1 157 -28 231 36 0 0 chr6 119797111 119797139 -69482415 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 35 41 0 0 chr6 119797309 119797358 -69482196 + AT_rich Low_complexity Low_complexity 1 49 0 225 196 0 0 chr6 119799225 119799271 -69480283 + GA-rich Low_complexity Low_complexity 2 47 0 1659 189 85 3 chr6 119799628 119799946 -69479608 - MER2 DNA MER2_type 0 345 2 2186 125 0 0 chr6 119801629 119801941 -69477613 + AluJb SINE Alu 1 312 0 1568 125 110 48 chr6 119802126 119802398 -69477156 - AluSg SINE Alu -21 289 1 904 267 32 28 chr6 119802900 119803151 -69476403 + MIR SINE MIR 11 262 0 280 365 94 29 chr6 119804025 119804195 -69475359 + MIR3 SINE MIR 19 199 -9 238 291 0 0 chr6 119804290 119804345 -69475209 - L2 LINE L2 -215 3057 3003 2073 82 14 34 chr6 119804819 119805139 -69474415 + AluSp SINE Alu 1 314 0 402 254 254 11 chr6 119805318 119805507 -69474047 - MIR SINE MIR -26 236 2 29 70 0 0 chr6 119805666 119805723 -69473831 + AT_rich Low_complexity Low_complexity 1 57 0 399 214 48 0 chr6 119805798 119805901 -69473653 + L1M4 LINE L1 1 108 -6434 * 3424 229 49 14 chr6 119805893 119806812 -69472742 + L1M4 LINE L1 309 1259 -5283 642 185 73 7 chr6 119806817 119806968 -69472586 - L1ME2 LINE L1 -173 5991 5831 1285 226 99 46 chr6 119806974 119807552 -69472002 + L1M4 LINE L1 1255 1870 -4776 1512 180 48 0 chr6 119807552 119807824 -69471730 + AluJo SINE Alu 11 295 -17 1285 226 99 46 chr6 119807824 119807870 -69471684 + L1M4 LINE L1 1870 1912 -4734 3687 72 44 0 chr6 119808362 119808865 -69470689 + LTR17 LTR ERV1 256 780 0 39442 42 10 11 chr6 119808894 119813964 -69465590 + HERV17 LTR ERV1 6 5067 -3559 13672 42 1 18 chr6 119813955 119815710 -69463844 + HERV17 LTR ERV1 6902 8626 0 * 2614 36 0 12 chr6 119815710 119816040 -69463514 + LTR17 LTR ERV1 1 326 -454 2291 212 63 66 chr6 119816055 119816870 -69462684 - L1ME2 LINE L1 -8 6156 5345 297 288 91 15 chr6 119817010 119817142 -69462412 + L2 LINE L2 3165 3306 -7 215 310 0 0 chr6 119817142 119817200 -69462354 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 24 0 0 0 chr6 119817345 119817369 -69462185 + AT_rich Low_complexity Low_complexity 1 24 0 625 138 0 60 chr6 119818392 119818508 -69461046 - AluSg/x SINE Alu -8 302 194 510 304 121 40 chr6 119819468 119819941 -69459613 + L1ME LINE L1 4389 4899 -1247 835 241 57 9 chr6 119819942 119820154 -69459400 + MER58A DNA MER1_type 2 223 -1 928 195 19 0 chr6 119820223 119820382 -69459172 - AluJb SINE Alu -17 295 134 24 0 0 0 chr6 119820442 119820466 -69459088 + AT_rich Low_complexity Low_complexity 1 24 0 54 49 0 0 chr6 119820528 119820610 -69458944 + AT_rich Low_complexity Low_complexity 1 82 0 290 309 117 27 chr6 119820610 119821092 -69458462 + L1ME LINE L1 5287 5584 -537 2098 138 0 0 chr6 119821096 119821393 -69458161 + AluSx SINE Alu 1 297 -15 1509 152 169 3 chr6 119821399 119821761 -69457793 + L1MB2 LINE L1 5280 5701 -482 1286 185 27 124 chr6 119821764 119822208 -69457346 + MLT2D LTR ERVL 14 414 0 740 102 87 0 chr6 119822208 119822335 -69457219 + L1MB2 LINE L1 5692 5829 -354 207 69 0 0 chr6 119822353 119822382 -69457172 + (CA)n Simple_repeat Simple_repeat 2 30 0 835 138 0 8 chr6 119822382 119822505 -69457049 - AluJb SINE Alu -190 122 1 1242 158 168 3 chr6 119822505 119822809 -69456745 + L1MB2 LINE L1 5816 6169 -2 1033 182 17 0 chr6 119823596 119823772 -69455782 + AluJb SINE Alu 123 301 -11 2220 119 0 0 chr6 119823774 119824068 -69455486 + AluSx SINE Alu 1 294 -18 32 0 0 0 chr6 119824076 119824108 -69455446 + AT_rich Low_complexity Low_complexity 1 32 0 1295 183 0 21 chr6 119824130 119824365 -69455189 - AluJb SINE Alu -2 310 81 449 273 102 72 chr6 119824662 119825036 -69454518 + L2 LINE L2 2929 3313 0 422 285 56 7 chr6 119825675 119825819 -69453735 + MIR SINE MIR 46 196 -66 384 85 0 0 chr6 119826581 119826618 -69452936 + (TC)n Simple_repeat Simple_repeat 2 41 -19 351 0 0 0 chr6 119826618 119826657 -69452897 + (CA)n Simple_repeat Simple_repeat 1 39 0 384 85 0 0 chr6 119826657 119826678 -69452876 + (TC)n Simple_repeat Simple_repeat 40 60 0 256 161 65 32 chr6 119826927 119826989 -69452565 - MARNA DNA Mariner -146 440 377 24 0 0 0 chr6 119827073 119827097 -69452457 + AT_rich Low_complexity Low_complexity 1 24 0 208 246 77 0 chr6 119827135 119827200 -69452354 - L2 LINE L2 -40 3273 3204 22 0 0 0 chr6 119827543 119827565 -69451989 + AT_rich Low_complexity Low_complexity 1 22 0 789 202 89 0 chr6 119827716 119827884 -69451670 + MER82 DNA MER2_type 2 184 -469 1392 213 50 3 chr6 119827885 119828185 -69451369 + MER82 DNA MER2_type 331 644 -9 21 0 0 0 chr6 119828632 119828653 -69450901 + AT_rich Low_complexity Low_complexity 1 21 0 2286 92 3 10 chr6 119828880 119829185 -69450369 + AluSp SINE Alu 2 304 -9 4173 154 74 21 chr6 119829334 119830271 -69449283 - L1MB7 LINE L1 0 6184 5197 22 0 0 0 chr6 119830310 119830332 -69449222 + AT_rich Low_complexity Low_complexity 1 22 0 181 340 204 34 chr6 119830573 119830720 -69448834 - MIR3 SINE MIR -7 201 30 202 246 131 0 chr6 119830906 119830967 -69448587 + L2 LINE L2 3178 3246 -26 291 253 84 39 chr6 119831039 119831193 -69448361 + LTR41 LTR ERVL 1 161 -612 536 134 18 12 chr6 119831859 119832017 -69447537 + GA-rich Low_complexity Low_complexity 1 158 0 2106 115 3 17 chr6 119832063 119832359 -69447195 - AluSx SINE Alu -14 298 7 300 296 230 0 chr6 119833793 119833945 -69445609 + L2 LINE L2 2528 2714 -600 248 163 0 0 chr6 119834065 119834108 -69445446 - MER97c DNA MER1_type? -1021 69 27 647 321 95 61 chr6 119834231 119834704 -69444850 + L2 LINE L2 2815 3303 -10 451 233 58 29 chr6 119834767 119834919 -69444635 + MIR SINE MIR 3 261 -1 218 258 65 16 chr6 119835081 119835143 -69444411 - MER91C DNA MER1_type -51 89 25 597 220 94 38 chr6 119836552 119836711 -69442843 + MER5B DNA MER1_type 7 174 -4 5223 130 171 5 chr6 119836732 119837787 -69441767 - Tigger3b DNA MER2_type -1 1230 1 203 361 16 0 chr6 119837794 119837855 -69441699 + MIR SINE MIR 30 91 -171 922 181 29 44 chr6 119838406 119838610 -69440944 + AluJo SINE Alu 95 295 -17 299 321 89 0 chr6 119838768 119838880 -69440674 - MIR SINE MIR -74 188 67 3296 60 13 13 chr6 119840053 119840501 -69439053 + L1PA6 LINE L1 5707 6154 0 188 333 43 32 chr6 119841748 119841841 -69437713 + MIR SINE MIR 157 250 -12 687 127 0 101 chr6 119842055 119842213 -69437341 + MER20 DNA MER1_type 78 219 0 598 211 151 18 chr6 119842222 119842318 -69437236 - MER5A DNA MER1_type -1 188 106 2038 103 26 0 chr6 119842318 119842589 -69436965 - AluSg SINE Alu -32 278 1 598 211 151 18 chr6 119842589 119842658 -69436896 - MER5A DNA MER1_type -83 106 1 27262 115 15 23 chr6 119842783 119849281 -69430273 + L1PA8 LINE L1 5 6483 -4 4228 138 28 37 chr6 119849292 119850192 -69429362 - pTR5 LTR ERV1 -804 1634 743 23 0 0 0 chr6 119850469 119850492 -69429062 + AT_rich Low_complexity Low_complexity 1 23 0 683 322 131 39 chr6 119850920 119851479 -69428075 + L2 LINE L2 2304 2913 -401 1250 175 57 11 chr6 119851484 119851764 -69427790 + MLT1A1 LTR MaLR 6 298 -67 377 203 0 0 chr6 119851859 119851928 -69427626 + U4 snRNA snRNA 1 69 -76 800 305 23 12 chr6 119852103 119852359 -69427195 + L2 LINE L2 2897 3155 -158 508 330 91 73 chr6 119852361 119852758 -69426796 + L2 LINE L2 2570 2973 -341 397 325 25 0 chr6 119852839 119852959 -69426595 + L2 LINE L2 3125 3247 -25 308 272 43 0 chr6 119853164 119853256 -69426298 + L1MC5 LINE L1 7806 7901 -60 208 216 0 59 chr6 119853798 119853849 -69425705 + polypurine Low_complexity Low_complexity 4 51 0 23 0 0 0 chr6 119854535 119854558 -69424996 + AT_rich Low_complexity Low_complexity 1 23 0 232 286 43 14 chr6 119854983 119855053 -69424501 - L2 LINE L2 -6 3307 3236 410 331 29 29 chr6 119855183 119855322 -69424232 + L2 LINE L2 3129 3267 -5 263 321 128 0 chr6 119855332 119855441 -69424113 - L2 LINE L2 -221 3051 2929 30 0 0 0 chr6 119855805 119855835 -69423719 + AT_rich Low_complexity Low_complexity 1 30 0 781 224 112 0 chr6 119856046 119856242 -69423312 - MER58A DNA MER1_type -3 221 4 250 245 181 53 chr6 119856379 119856408 -69423146 - MIR SINE MIR -58 150 126 2547 50 0 0 chr6 119856408 119856710 -69422844 + AluY SINE Alu 1 302 -9 250 245 181 53 chr6 119856710 119856774 -69422780 - MIR SINE MIR -82 126 45 5113 162 31 70 chr6 119857590 119857758 -69421796 - Tigger6a DNA MER2_type -520 1077 904 1995 154 3 0 chr6 119857758 119858056 -69421498 + AluSx SINE Alu 1 299 -13 5113 162 31 70 chr6 119858056 119858178 -69421376 - Tigger6a DNA MER2_type -693 904 779 1595 162 24 17 chr6 119858178 119858468 -69421086 - AluJo SINE Alu -20 292 1 5113 162 31 70 chr6 119858468 119859297 -69420257 - Tigger6a DNA MER2_type -818 779 1 263 248 53 68 chr6 119859297 119859430 -69420124 + L1ME LINE L1 85 215 -5855 919 193 35 10 chr6 119860313 119860510 -69419044 + L1ME LINE L1 5482 5683 -481 490 233 34 17 chr6 119860528 119860660 -69418894 + L1ME LINE L1 5652 5782 -384 552 257 100 29 chr6 119860866 119861107 -69418447 - MIR SINE MIR 0 262 5 3187 199 73 19 chr6 119861421 119862227 -69417327 - L1ME2 LINE L1 0 6233 5384 1686 250 67 63 chr6 119862778 119863020 -69416534 - L1ME2 LINE L1 -2048 4167 3927 1751 176 7 14 chr6 119863020 119863316 -69416238 - AluJb SINE Alu -18 294 1 1686 250 67 63 chr6 119863316 119863617 -69415937 - L1ME2 LINE L1 -2288 3927 3618 2222 138 0 0 chr6 119863617 119863937 -69415617 - 7SLRNA srpRNA srpRNA 0 320 1 1686 250 67 63 chr6 119863937 119864135 -69415419 - L1ME2 LINE L1 -2597 3618 3422 2197 183 66 63 chr6 119864136 119864581 -69414973 - L1MB7 LINE L1 -252 5932 5493 1363 204 23 20 chr6 119864581 119864880 -69414674 - AluJb SINE Alu -12 300 1 2197 183 66 63 chr6 119864880 119865168 -69414386 - L1MB7 LINE L1 -691 5493 5207 635 288 189 19 chr6 119865217 119865800 -69413754 - L1ME2 LINE L1 -5087 1309 628 1383 202 36 23 chr6 119865811 119866118 -69413436 - MER58B DNA MER1_type -1 340 30 319 388 100 0 chr6 119866325 119866495 -69413059 - L1ME2 LINE L1 -5950 446 260 2136 234 66 20 chr6 119866744 119867291 -69412263 + MLT1E LTR MaLR 22 593 0 333 245 82 110 chr6 119868009 119868200 -69411354 + L1MC4 LINE L1 7805 7989 -53 2121 104 7 0 chr6 119868200 119868487 -69411067 - AluSx SINE Alu -15 297 9 333 245 82 110 chr6 119868487 119868540 -69411014 + L1MC4 LINE L1 7989 8042 0 405 279 152 19 chr6 119868850 119869008 -69410546 + MER5A DNA MER1_type 10 188 -1 1545 204 57 30 chr6 119869815 119870251 -69409303 - Charlie1a DNA MER1_type -51 1404 957 807 201 7 32 chr6 119870262 119870416 -69409138 - AluJo SINE Alu -26 286 137 623 10 31 31 chr6 119870416 119870513 -69409041 + (TTTTA)n Simple_repeat Simple_repeat 2 98 0 186 103 0 0 chr6 119870533 119870562 -69408992 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 1691 169 15 0 chr6 119870565 119870838 -69408716 - AluJo SINE Alu -31 281 5 4407 179 34 14 chr6 119870858 119871749 -69407805 - Charlie1a DNA MER1_type -511 944 36 189 107 0 0 chr6 119871776 119871804 -69407750 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 359 83 0 179 chr6 119872324 119872408 -69407146 + AluSq/x SINE Alu 41 109 -194 730 111 111 0 chr6 119872878 119872995 -69406559 - AluJo SINE Alu -182 130 1 273 290 134 0 chr6 119873706 119873944 -69405610 - L1ME4a LINE L1 -40 6081 5812 1137 146 28 73 chr6 119874134 119874381 -69405173 - MER46A DNA MER2_type 0 236 1 364 130 0 0 chr6 119874565 119874619 -69404935 + MER66B LTR ERV1 294 347 -139 204 167 0 0 chr6 119874628 119874676 -69404878 + (TA)n Simple_repeat Simple_repeat 1 48 0 1688 152 0 76 chr6 119874761 119875090 -69404464 + AluSx SINE Alu 1 304 -8 198 103 0 0 chr6 119875285 119875314 -69404240 + (CA)n Simple_repeat Simple_repeat 2 30 0 1931 174 0 0 chr6 119875790 119876089 -69403465 - AluJo SINE Alu -13 299 1 4663 187 87 21 chr6 119876296 119876761 -69402793 + Looper DNA T2_type 1 434 -1124 2069 135 0 0 chr6 119876761 119877058 -69402496 + AluSx SINE Alu 1 297 -15 4663 187 87 21 chr6 119877058 119877943 -69401611 + Looper DNA T2_type 434 1482 -76 441 0 0 0 chr6 119877943 119877992 -69401562 + (CA)n Simple_repeat Simple_repeat 2 50 0 913 155 42 0 chr6 119878014 119878156 -69401398 + AluJo SINE Alu 1 148 -164 2244 96 14 0 chr6 119878191 119878483 -69401071 - AluSg SINE Alu -13 297 2 260 222 0 19 chr6 119878519 119878573 -69400981 + Looper DNA T2_type 1504 1556 -2 1207 117 0 0 chr6 119878624 119878795 -69400759 + AluSg/x SINE Alu 131 301 -11 1409 173 73 30 chr6 119879343 119879672 -69399882 + MER2 DNA MER2_type 1 343 -1 678 107 124 0 chr6 119880390 119880511 -69399043 - MER85 DNA T2_type -3 136 1 1705 174 55 3 chr6 119880718 119881046 -69398508 - MER7A DNA MER2_type 0 346 4 189 0 0 0 chr6 119881774 119881795 -69397759 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 1104 138 36 26 chr6 119881850 119882045 -69397509 + MER46A DNA MER2_type 38 234 -2 924 241 5 30 chr6 119882047 119882246 -69397308 - MIR SINE MIR -64 198 5 352 316 67 36 chr6 119882595 119882788 -69396766 - L2 LINE L2 -534 2780 2582 2671 241 127 70 chr6 119882873 119884398 -69395156 + L1ME1 LINE L1 2741 4352 -1794 640 104 42 0 chr6 119884403 119884499 -69395055 + U6 snRNA snRNA 3 102 -5 35 0 0 0 chr6 119884500 119884535 -69395019 + AT_rich Low_complexity Low_complexity 1 35 0 1655 231 54 18 chr6 119884589 119885035 -69394519 + L1ME1 LINE L1 5671 6132 -34 2284 91 3 0 chr6 119885035 119885333 -69394221 + AluSq SINE Alu 1 299 -14 934 189 78 15 chr6 119886624 119886830 -69392724 + MER20 DNA MER1_type 1 219 0 2045 95 15 0 chr6 119887761 119888035 -69391519 - AluSp SINE Alu -9 304 27 238 65 0 0 chr6 119888036 119888067 -69391487 + U2 snRNA snRNA 31 61 -127 565 254 0 8 chr6 119890307 119890429 -69389125 + L2 LINE L2 3189 3309 -4 1693 138 85 0 chr6 119890772 119891077 -69388477 - L1MB3 LINE L1 0 6183 5853 331 295 18 0 chr6 119891403 119891515 -69388039 - L2 LINE L2 -37 3276 3163 1625 323 128 42 chr6 119891850 119892055 -69387499 - L2 LINE L2 -483 2831 2645 2213 106 3 3 chr6 119892055 119892356 -69387198 - AluSq SINE Alu -12 301 1 1625 323 128 42 chr6 119892356 119892849 -69386705 - L2 LINE L2 -669 2645 2196 333 0 0 0 chr6 119892849 119892886 -69386668 + (CA)n Simple_repeat Simple_repeat 2 38 0 1625 323 128 42 chr6 119892886 119893668 -69385886 - L2 LINE L2 -1118 2196 1223 1822 156 7 7 chr6 119894500 119894813 -69384741 + AluSx SINE Alu 1 313 0 29 0 0 0 chr6 119895761 119895790 -69383764 + AT_rich Low_complexity Low_complexity 1 29 0 281 168 112 75 chr6 119896116 119896223 -69383331 + L1ME4a LINE L1 5990 6100 -21 847 272 92 0 chr6 119899206 119899445 -69380109 + MIR SINE MIR 2 262 0 511 336 78 61 chr6 119899720 119900080 -69379474 + L2 LINE L2 2903 3268 -4 380 338 34 40 chr6 119900268 119900416 -69379138 - MIR SINE MIR -114 148 2 488 290 59 6 chr6 119900758 119900927 -69378627 + MIR SINE MIR 85 262 0 454 310 129 7 chr6 119901291 119901446 -69378108 + MIR SINE MIR 3 176 -86 305 309 77 89 chr6 119901523 119901588 -69377966 + L2 LINE L2 2950 3014 -258 2543 37 0 0 chr6 119901588 119901883 -69377671 - AluY SINE Alu -16 295 1 305 309 77 89 chr6 119901883 119902141 -69377413 + L2 LINE L2 3014 3269 -3 339 250 102 19 chr6 119902348 119902456 -69377098 + L2 LINE L2 3187 3303 -10 646 200 176 29 chr6 119902608 119902813 -69376741 + L2 LINE L2 1166 1400 -1914 1435 268 189 46 chr6 119902897 119903145 -69376409 + L2 LINE L2 2099 2310 -1004 1861 72 4 68 chr6 119903145 119903424 -69376130 - AluY SINE Alu -12 299 39 1435 268 189 46 chr6 119903424 119903486 -69376068 + L2 LINE L2 2310 2362 -952 1249 151 144 36 chr6 119903486 119903764 -69375790 - AluJo SINE Alu -4 308 1 1435 268 189 46 chr6 119903764 119904217 -69375337 + L2 LINE L2 2362 2973 -341 1911 167 33 3 chr6 119904345 119904675 -69374879 - MER2 DNA MER2_type 0 345 6 305 272 24 64 chr6 119904696 119904821 -69374733 + L2 LINE L2 3171 3290 -23 2341 55 0 7 chr6 119906519 119906812 -69372742 + AluY SINE Alu 1 291 -20 870 248 71 4 chr6 119907048 119907286 -69372268 - MER112 DNA MER1_type 0 256 3 225 402 31 0 chr6 119907303 119907400 -69372154 - L3 LINE CR1 -58 1519 1420 225 284 0 0 chr6 119907571 119907638 -69371916 + L1MC4a LINE L1 7741 7807 -1 1891 154 17 0 chr6 119907644 119907936 -69371618 + AluJo SINE Alu 1 297 -15 324 271 235 6 chr6 119908092 119908258 -69371296 - L3 LINE CR1 -276 1301 1098 3396 104 87 2 chr6 119908490 119908961 -69370593 + MER9 LTR ERVK 1 511 0 325 320 99 41 chr6 119909509 119909872 -69369682 + L2 LINE L2 2592 2975 -339 202 224 224 0 chr6 119910013 119910062 -69369492 + L2 LINE L2 3204 3263 -9 2068 129 0 7 chr6 119910870 119911176 -69368378 + AluSx SINE Alu 1 304 0 16837 114 17 17 chr6 119911252 119912816 -69366738 + Tigger1 DNA MER2_type 2 1565 -853 1950 130 27 10 chr6 119912816 119913109 -69366445 + AluJb SINE Alu 1 298 -14 16837 114 17 17 chr6 119913109 119913757 -69365797 + Tigger1 DNA MER2_type 1565 2217 -201 1811 181 0 0 chr6 119913757 119914045 -69365509 - AluJo SINE Alu -24 288 1 16837 114 17 17 chr6 119914045 119914246 -69365308 + Tigger1 DNA MER2_type 2216 2416 -2 2653 40 0 0 chr6 119914501 119914800 -69364754 - AluY SINE Alu -12 299 1 188 333 129 67 chr6 119914841 119915051 -69364503 - L2 LINE L2 -5 3267 3045 2467 53 3 0 chr6 119915494 119915798 -69363756 + AluY SINE Alu 1 305 -6 677 251 6 44 chr6 119916255 119916438 -69363116 + MIR SINE MIR 75 250 -12 243 0 0 0 chr6 119916452 119916479 -69363075 + (CAT)n Simple_repeat Simple_repeat 3 29 0 2193 135 0 6 chr6 119916573 119916885 -69362669 + AluSq SINE Alu 1 310 -3 654 252 113 67 chr6 119917271 119917509 -69362045 + MIR SINE MIR 11 259 -3 30 45 0 0 chr6 119917633 119917677 -69361877 + AT_rich Low_complexity Low_complexity 1 44 0 1965 130 9 22 chr6 119917677 119917993 -69361561 + AluSx SINE Alu 1 312 0 832 128 8 0 chr6 119918001 119918118 -69361436 - FLAM_C SINE Alu -25 118 1 241 279 180 37 chr6 119918918 119919079 -69360475 + MIR SINE MIR 66 249 -13 557 269 135 5 chr6 119919116 119919309 -69360245 + MIR SINE MIR 29 246 -16 202 317 0 12 chr6 119919317 119919399 -69360155 + (TAG)n Simple_repeat Simple_repeat 3 83 0 2002 156 55 3 chr6 119919551 119919877 -69359677 - MER2 DNA MER2_type -1 343 1 567 315 7 20 chr6 119919946 119920244 -69359310 + L1MC4 LINE L1 7708 8001 -41 2270 261 92 51 chr6 119920258 119920409 -69359145 - L1MEc LINE L1 -4425 1971 1828 2341 124 49 3 chr6 119920409 119920755 -69358799 - MER47A DNA MER2_type -4 362 1 2270 261 92 51 chr6 119920755 119920859 -69358695 - L1MEc LINE L1 -4568 1828 1730 1834 84 161 0 chr6 119920859 119921108 -69358446 + AluSg1 SINE Alu 6 294 -15 2270 261 92 51 chr6 119921108 119922097 -69357457 - L1MEc LINE L1 -4666 1730 674 324 330 36 80 chr6 119922097 119922294 -69357260 - L1MEc LINE L1 -5679 717 542 2505 61 0 3 chr6 119922294 119922591 -69356963 - AluY SINE Alu -15 296 1 324 330 36 80 chr6 119922591 119922757 -69356797 - L1MEc LINE L1 -5854 542 370 336 167 0 0 chr6 119922964 119923018 -69356536 - MLT1H LTR MaLR 0 542 489 23 33 0 0 chr6 119923116 119923146 -69356408 + AT_rich Low_complexity Low_complexity 1 30 0 1588 57 0 5 chr6 119923391 119923583 -69355971 - L1PA3 LINE L1 0 6155 5965 511 283 91 60 chr6 119923611 119924066 -69355488 - MLT1H LTR MaLR -36 513 1 2020 59 0 0 chr6 119924214 119924451 -69355103 + AluY SINE Alu 71 307 -4 952 340 64 36 chr6 119924526 119925214 -69354340 + L2 LINE L2 2031 2737 -577 451 321 26 38 chr6 119925455 119925720 -69353834 + L2 LINE L2 2838 3099 -173 471 304 74 27 chr6 119925774 119925922 -69353632 + LTR67 LTR ERVL 36 190 -367 277 297 29 29 chr6 119926111 119926249 -69353305 + LTR67 LTR ERVL 416 553 -4 313 309 36 36 chr6 119926379 119926489 -69353065 - L2 LINE L2 -12 3301 3192 1034 108 0 0 chr6 119926503 119926632 -69352922 + FLAM_C SINE Alu 1 129 -4 205 140 0 40 chr6 119926978 119927028 -69352526 + (TTTTC)n Simple_repeat Simple_repeat 4 51 0 452 83 0 42 chr6 119927204 119927300 -69352254 + (TA)n Simple_repeat Simple_repeat 1 92 0 1887 239 65 41 chr6 119927365 119927781 -69351773 + L1ME3 LINE L1 5388 5828 -334 1404 186 0 77 chr6 119927781 119928108 -69351446 + AluJb SINE Alu 1 302 -10 1887 239 65 41 chr6 119928108 119928345 -69351209 + L1ME3 LINE L1 5828 6058 -104 2156 88 0 31 chr6 119928373 119928667 -69350887 - AluSx SINE Alu -27 285 1 326 197 40 0 chr6 119928755 119928831 -69350723 + L1ME3 LINE L1 6082 6160 -2 180 111 0 0 chr6 119928864 119928891 -69350663 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 23 54 0 0 chr6 119929627 119929664 -69349890 + GC_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr6 119929720 119929744 -69349810 + GC_rich Low_complexity Low_complexity 1 24 0 195 42 0 0 chr6 119930186 119930210 -69349344 + (TCC)n Simple_repeat Simple_repeat 3 26 0 205 299 138 0 chr6 119930653 119930740 -69348814 - MIR SINE MIR -61 147 49 2594 52 3 0 chr6 119931032 119931342 -69348212 - AluY SINE Alu 0 311 1 184 338 119 57 chr6 119931383 119931593 -69347961 - L2 LINE L2 -5 3267 3045 2727 20 3 0 chr6 119932037 119932341 -69347213 + AluY SINE Alu 1 305 -6 677 251 6 44 chr6 119932798 119932981 -69346573 + MIR SINE MIR 75 250 -12 243 0 0 0 chr6 119932995 119933022 -69346532 + (CAT)n Simple_repeat Simple_repeat 3 29 0 2193 135 0 6 chr6 119933116 119933428 -69346126 + AluSq SINE Alu 1 310 -3 654 252 113 67 chr6 119933814 119934052 -69345502 + MIR SINE MIR 11 259 -3 30 45 0 0 chr6 119934176 119934220 -69345334 + AT_rich Low_complexity Low_complexity 1 44 0 2027 120 9 22 chr6 119934220 119934536 -69345018 + AluSx SINE Alu 1 312 0 832 128 8 0 chr6 119934544 119934661 -69344893 - FLAM_C SINE Alu -25 118 1 241 279 180 37 chr6 119935461 119935622 -69343932 + MIR SINE MIR 66 249 -13 559 272 133 5 chr6 119935659 119935854 -69343700 + MIR SINE MIR 29 248 -14 202 317 0 12 chr6 119935860 119935942 -69343612 + (TAG)n Simple_repeat Simple_repeat 3 83 0 2275 114 0 0 chr6 119936380 119936679 -69342875 + AluSc SINE Alu 1 299 -10 1551 161 67 15 chr6 119936761 119937028 -69342526 + AluJo SINE Alu 7 287 -25 830 142 0 31 chr6 119937206 119937333 -69342221 + FLAM_C SINE Alu 2 124 -9 255 61 0 0 chr6 119937336 119937369 -69342185 + (CA)n Simple_repeat Simple_repeat 2 34 0 742 246 66 31 chr6 119938809 119939037 -69340517 - MIR SINE MIR -14 248 13 223 332 208 0 chr6 119939673 119939803 -69339751 - MIR3 SINE MIR -51 157 38 471 37 0 275 chr6 119941281 119941336 -69338218 + MADE1 DNA Mariner 2 14 -66 1887 163 10 0 chr6 119941336 119941625 -69337929 - AluSx SINE Alu -20 292 1 471 37 0 275 chr6 119941625 119941678 -69337876 + MADE1 DNA Mariner 14 80 0 227 328 190 6 chr6 119941845 119942019 -69337535 - MIR SINE MIR -25 237 32 267 274 14 0 chr6 119943137 119943210 -69336344 - L2 LINE L2 0 3272 3199 1701 154 13 30 chr6 119943345 119943644 -69335910 + AluJo SINE Alu 1 294 -18 185 250 11 0 chr6 119943795 119943887 -69335667 + (TA)n Simple_repeat Simple_repeat 1 93 0 1771 144 14 25 chr6 119944174 119944458 -69335096 + AluJo SINE Alu 1 281 -31 441 95 0 0 chr6 119944459 119944522 -69335032 + (TAAG)n Simple_repeat Simple_repeat 1 63 0 1647 149 95 29 chr6 119944849 119945165 -69334389 - MER44D DNA MER2_type -1 608 2 264 253 159 60 chr6 119945173 119945355 -69334199 - L1ME4a LINE L1 -84 6037 5838 1356 227 162 22 chr6 119945425 119945875 -69333679 + LTR33 LTR ERVL 5 517 -4 243 0 0 0 chr6 119946695 119946722 -69332832 + (TA)n Simple_repeat Simple_repeat 1 27 0 320 348 0 9 chr6 119946965 119947084 -69332470 + MIR SINE MIR 34 150 -60 182 255 0 20 chr6 119947673 119947724 -69331830 - MIR SINE MIR -97 165 116 1900 129 17 17 chr6 119947941 119948236 -69331318 + AluSx SINE Alu 1 295 -17 2462 87 0 0 chr6 119948323 119948634 -69330920 - AluY SINE Alu 0 311 1 1490 168 6 73 chr6 119948636 119948952 -69330602 - AluJo SINE Alu -17 295 1 247 374 113 0 chr6 119949668 119949783 -69329771 + MIR SINE MIR 21 148 -60 332 333 0 0 chr6 119950403 119950496 -69329058 + MIR SINE MIR 48 140 -68 898 266 158 3 chr6 119950566 119950901 -69328653 - LTR16C LTR ERVL -2 489 103 354 157 0 0 chr6 119951624 119951675 -69327879 + Alu SINE Alu 1 51 -250 24 32 0 0 chr6 119951675 119951706 -69327848 + AT_rich Low_complexity Low_complexity 1 31 0 29 70 0 0 chr6 119951753 119951810 -69327744 + AT_rich Low_complexity Low_complexity 1 57 0 327 238 83 0 chr6 119952404 119952488 -69327066 - MIR SINE MIR -74 134 44 18961 91 59 29 chr6 119953335 119955962 -69323592 - Charlie3 DNA MER1_type -4 2706 1 293 244 13 0 chr6 119957098 119957176 -69322378 - MER94 DNA DNA -34 100 22 332 297 68 27 chr6 119958257 119958405 -69321149 - L1M LINE L1 -746 5428 5275 201 254 0 0 chr6 119959445 119959500 -69320054 + CT-rich Low_complexity Low_complexity 1 55 0 3060 221 68 38 chr6 119959510 119960144 -69319410 - L1ME3 LINE L1 -2 6160 5492 2051 101 3 49 chr6 119960144 119960451 -69319103 - AluSx SINE Alu -15 297 5 3060 221 68 38 chr6 119960451 119960685 -69318869 - L1ME3 LINE L1 -670 5492 5266 405 58 0 0 chr6 119961002 119961054 -69318500 + (TG)n Simple_repeat Simple_repeat 2 53 0 2094 120 0 30 chr6 119961847 119962146 -69317408 - AluSx SINE Alu -20 292 3 2083 123 24 0 chr6 119962754 119963046 -69316508 - AluSx SINE Alu -13 299 1 1160 132 13 0 chr6 119963933 119964092 -69315462 - AluSg/x SINE Alu -14 298 138 25 0 0 0 chr6 119964097 119964122 -69315432 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr6 119964146 119964177 -69315377 + AT_rich Low_complexity Low_complexity 1 31 0 889 145 0 0 chr6 119964186 119964310 -69315244 + AluJb SINE Alu 1 124 -188 29 0 0 0 chr6 119964311 119964340 -69315214 + AT_rich Low_complexity Low_complexity 1 29 0 403 236 49 92 chr6 119964406 119964711 -69314843 - L1M4 LINE L1 -2982 3164 2873 508 315 73 41 chr6 119965025 119965339 -69314215 - L1MEd LINE L1 -5751 368 45 2046 127 0 0 chr6 119965778 119966053 -69313501 - AluSg SINE Alu -35 275 1 1614 133 43 36 chr6 119966186 119966464 -69313090 - L1MA9 LINE L1 -2 6310 6031 715 169 0 3 chr6 119967307 119967546 -69312008 + AluJ SINE Alu 2 311 0 273 419 110 7 chr6 119967888 119968024 -69311530 + L2 LINE L2 3123 3272 0 1695 172 0 65 chr6 119968722 119968928 -69310626 - AluJo SINE Alu -4 308 129 2325 96 3 3 chr6 119968928 119969231 -69310323 + AluSx SINE Alu 1 303 -9 1695 172 0 65 chr6 119969231 119969349 -69310205 - AluJo SINE Alu -183 129 5 387 316 134 53 chr6 119969717 119970037 -69309517 - L2 LINE L2 -31 3241 2896 4833 13 0 0 chr6 119970480 119971016 -69308538 - L1HS LINE L1 -1 6154 5619 * 6649 21 0 0 chr6 119971013 119971777 -69307777 + L1P LINE L1 4283 5046 -1100 347 246 74 57 chr6 119971993 119972115 -69307439 + L2 LINE L2 3190 3313 0 1418 178 100 7 chr6 119972127 119972246 -69307308 + AluJo SINE Alu 1 108 -204 180 0 0 0 chr6 119972246 119972266 -69307288 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1418 178 100 7 chr6 119972266 119972427 -69307127 + AluJo SINE Alu 108 307 -5 296 320 87 23 chr6 119972435 119972607 -69306947 - L2 LINE L2 -431 2883 2701 495 280 124 27 chr6 119972622 119972847 -69306707 + MER112 DNA MER1_type 7 253 -7 216 306 76 28 chr6 119973220 119973364 -69306190 - MIR SINE MIR -111 151 1 32412 93 12 22 chr6 119973654 119980097 -69299457 + L1PA7 LINE L1 1 6468 -1 376 292 144 48 chr6 119980608 119980638 -69298916 - L1MEd LINE L1 -5719 400 374 2365 188 44 75 chr6 119980638 119981208 -69298346 - MLT2B3 LTR ERVL -2 552 1 376 292 144 48 chr6 119981208 119981489 -69298065 - L1MEd LINE L1 -5745 374 59 394 245 136 78 chr6 119981993 119982250 -69297304 - MLT1K LTR MaLR -32 556 285 231 171 0 0 chr6 119982280 119982315 -69297239 + MLT1K LTR MaLR 171 205 -383 277 339 25 8 chr6 119982316 119982434 -69297120 - MLT1K LTR MaLR -436 152 33 2119 132 0 3 chr6 119982468 119982763 -69296791 + AluSx SINE Alu 1 294 -18 297 320 63 35 chr6 119983059 119983375 -69296179 + Charlie4 DNA MER1_type 421 745 -1216 1800 159 3 7 chr6 119984529 119984812 -69294742 + AluJb SINE Alu 14 295 -17 273 226 20 29 chr6 119985727 119985829 -69293725 + L1ME LINE L1 5693 5793 -369 1157 163 56 0 chr6 119986073 119986269 -69293285 - AluJb SINE Alu -6 306 100 27 29 0 0 chr6 119986269 119986303 -69293251 + AT_rich Low_complexity Low_complexity 1 34 0 417 245 140 14 chr6 119986366 119986509 -69293045 - MER96 DNA MER1_type? -14 161 1 2405 206 127 35 chr6 119986691 119987554 -69292000 - LTR28 LTR ERV1 0 1020 3 3098 168 27 67 chr6 119987770 119988408 -69291146 - LTR9 LTR ERV1 0 612 1 1963 149 0 3 chr6 119988469 119988757 -69290797 - AluJb SINE Alu -25 287 1 1243 213 44 109 chr6 119989191 119989688 -69289866 - MER4C LTR ERV1 0 465 1 861 50 0 0 chr6 119989779 119989879 -69289675 + HY3 scRNA scRNA 1 100 -1 2355 108 44 42 chr6 119990790 119991151 -69288403 - THE1B LTR MaLR 0 364 3 1618 171 3 14 chr6 119991395 119991708 -69287846 - AluJb SINE Alu 0 310 1 207 0 0 0 chr6 119992325 119992348 -69287206 + (T)n Simple_repeat Simple_repeat 1 23 0 2216 129 3 0 chr6 119992769 119993078 -69286476 - AluJb SINE Alu -2 310 1 2417 231 157 144 chr6 119993533 119993545 -69286009 + L2 LINE L2 57 67 -3246 2104 121 3 0 chr6 119993545 119993835 -69285719 - AluSq SINE Alu -22 291 1 2417 231 157 144 chr6 119993835 119994709 -69284845 + L2 LINE L2 67 928 -2385 2180 103 3 23 chr6 119994709 119995011 -69284543 - AluSq SINE Alu -17 296 1 2417 231 157 144 chr6 119995011 119997283 -69282271 + L2 LINE L2 928 3245 -68 529 289 19 6 chr6 119997607 119997782 -69281772 - MIR SINE MIR -50 212 36 808 226 75 44 chr6 119998696 119998948 -69280606 + MIR SINE MIR 1 260 -2 21 36 0 0 chr6 119999051 119999079 -69280475 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 119999192 119999214 -69280340 + AT_rich Low_complexity Low_complexity 1 22 0 1558 155 115 11 chr6 119999221 119999499 -69280055 + AluJo SINE Alu 1 307 -5 289 313 31 12 chr6 119999531 119999700 -69279854 - MLT1H1 LTR MaLR 0 555 419 2291 106 0 0 chr6 119999933 120000234 -69279320 - AluSx SINE Alu -10 302 2 414 160 27 0 chr6 120000512 120000587 -69278967 + L1PA16 LINE L1 6087 6163 -3 2278 119 0 3 chr6 120001901 120002212 -69277342 - AluSg SINE Alu 0 310 1 335 330 18 9 chr6 120002768 120002880 -69276674 - L1MC4 LINE L1 -1316 6726 6614 1452 192 19 0 chr6 120002929 120003200 -69276354 - MLT1F1 LTR MaLR -6 561 286 288 120 0 0 chr6 120003218 120003268 -69276286 + (GA)n Simple_repeat Simple_repeat 2 51 0 264 209 37 34 chr6 120003268 120003413 -69276141 - MLT1F LTR MaLR -370 197 1 1019 203 9 22 chr6 120003652 120003879 -69275675 - MER58A DNA MER1_type 0 224 1 1418 196 51 11 chr6 120004262 120004538 -69275016 - AluJo SINE Alu -25 287 1 25 0 0 0 chr6 120004655 120004680 -69274874 + AT_rich Low_complexity Low_complexity 1 25 0 1514 154 138 4 chr6 120004680 120004940 -69274614 - AluSx SINE Alu -17 295 1 21 0 0 0 chr6 120005078 120005099 -69274455 + AT_rich Low_complexity Low_complexity 1 21 0 321 203 237 0 chr6 120005213 120005331 -69274223 - L1ME4a LINE L1 -3 6118 5973 2320 54 17 0 chr6 120005369 120005666 -69273888 - AluY SINE Alu -9 302 1 474 290 63 19 chr6 120005722 120005991 -69273563 - L1ME4a LINE L1 -305 5816 5536 721 210 102 6 chr6 120006047 120006204 -69273350 + FAM SINE Alu 1 172 -3 1777 189 0 16 chr6 120006493 120006810 -69272744 - AluJo SINE Alu 0 312 1 735 237 52 20 chr6 120007399 120007648 -69271906 - MLT1C LTR MaLR 0 467 211 758 147 0 70 chr6 120007991 120008134 -69271420 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr6 120008336 120008360 -69271194 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr6 120008673 120008708 -69270846 + AT_rich Low_complexity Low_complexity 1 35 0 358 160 27 0 chr6 120008961 120009036 -69270518 + MER116 DNA Mariner 2 78 -2 234 91 0 0 chr6 120009309 120009342 -69270212 + (TC)n Simple_repeat Simple_repeat 1 33 0 2185 121 0 7 chr6 120009342 120009640 -69269914 - AluSx SINE Alu -16 296 1 205 321 0 0 chr6 120011753 120011806 -69267748 - L2 LINE L2 0 3272 3220 1934 84 0 0 chr6 120012793 120013068 -69266486 - L1MA3 LINE L1 0 6305 6031 827 149 0 0 chr6 120013935 120014049 -69265505 + FLAM_C SINE Alu 11 124 -19 222 37 0 0 chr6 120014055 120014082 -69265472 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 570 200 71 58 chr6 120014386 120014541 -69265013 + MIR3 SINE MIR 37 193 -15 642 250 159 0 chr6 120014647 120014823 -69264731 - MIR SINE MIR -1 261 58 218 372 18 37 chr6 120015046 120015210 -69264344 + MIR3 SINE MIR 44 204 -4 232 237 0 26 chr6 120015819 120015895 -69263659 + MER69 DNA AcHobo 2449 2522 -4 1492 83 103 0 chr6 120016402 120016617 -69262937 + L1MA2 LINE L1 6038 6282 -22 237 33 0 0 chr6 120016617 120016647 -69262907 + (TA)n Simple_repeat Simple_repeat 2 31 0 1492 83 103 0 chr6 120016647 120016673 -69262881 + L1MA2 LINE L1 6282 6304 0 610 118 0 0 chr6 120018452 120018537 -69261017 + 5S rRNA rRNA 2 86 -35 2157 103 34 7 chr6 120019016 120019308 -69260246 + AluSx SINE Alu 1 300 -12 327 223 39 19 chr6 120019593 120019696 -69259858 - MLT1L LTR MaLR -4 611 507 323 262 101 13 chr6 120020009 120020158 -69259396 - MLT1L LTR MaLR -405 210 49 305 239 19 19 chr6 120021011 120021166 -69258388 + (TTATA)n Simple_repeat Simple_repeat 5 159 0 2038 110 6 54 chr6 120021198 120021515 -69258039 + AluSx SINE Alu 1 302 -10 542 65 19 201 chr6 120022123 120022277 -69257277 + L1MB2 LINE L1 6045 6170 -1 26 82 0 0 chr6 120022435 120022496 -69257058 + AT_rich Low_complexity Low_complexity 1 61 0 862 20 0 0 chr6 120023902 120024001 -69255553 + HY3 scRNA scRNA 2 100 -1 22 0 0 0 chr6 120024250 120024272 -69255282 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 120024597 120024620 -69254934 + AT_rich Low_complexity Low_complexity 1 23 0 2072 140 0 26 chr6 120025227 120025535 -69254019 - AluSx SINE Alu -12 300 1 2612 143 7 36 chr6 120026147 120026588 -69252966 - MSTC LTR MaLR 0 428 1 389 311 71 22 chr6 120026928 120027111 -69252443 + L1MC4a LINE L1 5870 6061 -1747 243 364 73 45 chr6 120027369 120027616 -69251938 + L2 LINE L2 2935 3188 -84 593 245 101 103 chr6 120028650 120029090 -69250464 - L1ME4a LINE L1 -260 5861 5422 219 36 0 0 chr6 120029090 120029118 -69250436 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 593 245 101 103 chr6 120029118 120029135 -69250419 - L1ME4a LINE L1 -699 5422 5406 1867 39 0 22 chr6 120029135 120029364 -69250190 - AluY SINE Alu -87 224 1 593 245 101 103 chr6 120029364 120029465 -69250089 - L1ME4a LINE L1 -715 5406 5299 1990 129 7 0 chr6 120029846 120030158 -69249396 - AluSg SINE Alu 0 314 1 2248 35 42 24 chr6 120031196 120031532 -69248022 - AluY SINE Alu 0 311 1 1740 180 3 3 chr6 120031945 120032239 -69247315 + AluJo SINE Alu 1 294 -18 2388 81 3 3 chr6 120033286 120033582 -69245972 + AluSg SINE Alu 1 296 -14 225 370 102 53 chr6 120034088 120034334 -69245220 + L2 LINE L2 2985 3242 -30 390 265 20 60 chr6 120034350 120034501 -69245053 + MIR3 SINE MIR 23 167 -41 181 231 39 0 chr6 120034709 120034761 -69244793 + MIR3 SINE MIR 151 204 -4 1919 174 0 28 chr6 120036254 120036575 -69242979 + AluJb SINE Alu 1 312 0 511 243 13 23 chr6 120036790 120037023 -69242531 + MER46C DNA MER2_type 59 338 0 1050 166 0 0 chr6 120037612 120037769 -69241785 + AluJb SINE Alu 132 288 -24 867 312 124 28 chr6 120037919 120038565 -69240989 + L2 LINE L2 2614 3313 0 216 206 32 16 chr6 120038958 120039021 -69240533 - L2 LINE L2 -547 2767 2704 916 185 0 6 chr6 120039250 120039412 -69240142 + AluJb SINE Alu 136 296 -16 1213 123 0 0 chr6 120039492 120039655 -69239899 + AluSg/x SINE Alu 127 289 -20 186 264 75 0 chr6 120039893 120039946 -69239608 - MIR SINE MIR -82 180 124 1964 151 0 35 chr6 120041686 120042003 -69237551 + AluJb SINE Alu 1 306 -6 270 193 6 127 chr6 120042245 120042411 -69237143 - L1MC5 LINE L1 -30 7931 7786 848 157 0 0 chr6 120042447 120042594 -69236960 + L1MC3 LINE L1 6544 6690 -1095 635 225 94 0 chr6 120043284 120043422 -69236132 + FRAM SINE Alu 1 151 -15 520 278 61 8 chr6 120043686 120044029 -69235525 + MER115 DNA AcHobo 242 685 -8 226 336 105 28 chr6 120044474 120044889 -69234665 - L2 LINE L2 -189 3083 2632 308 278 222 0 chr6 120045403 120045511 -69234043 + MIR3 SINE MIR 74 205 -3 810 239 150 9 chr6 120045888 120046114 -69233440 + MIR SINE MIR 5 262 0 2333 131 9 0 chr6 120047700 120048044 -69231510 + MER1A DNA MER1_type 1 347 -182 1511 129 100 0 chr6 120048047 120048318 -69231236 - L1MB7 LINE L1 -265 5919 5622 436 143 52 0 chr6 120048318 120048395 -69231159 - MLT1A2 LTR MaLR 0 374 294 * 642 190 7 0 chr6 120048392 120048529 -69231025 - MLT1A2 LTR MaLR -233 141 4 1961 155 39 12 chr6 120048532 120049180 -69230374 - L1MB7 LINE L1 -552 5626 4957 2098 110 7 17 chr6 120049456 120049757 -69229797 + AluY SINE Alu 1 298 -13 1878 146 4 0 chr6 120049769 120050043 -69229511 + AluSx SINE Alu 7 281 -31 2744 10 0 3 chr6 120050043 120050347 -69229207 - AluYa5 SINE Alu -7 304 1 557 262 87 34 chr6 120050621 120050827 -69228727 + LTR33 LTR ERVL 5 221 -300 1475 159 93 8 chr6 120051124 120051564 -69227990 - MLT1E1 LTR MaLR -108 546 11 2353 88 0 22 chr6 120051567 120051885 -69227669 + AluY SINE Alu 1 311 0 5600 152 40 25 chr6 120051931 120052430 -69227124 - L1MA6 LINE L1 -5 6937 6447 207 0 0 0 chr6 120052430 120052453 -69227101 + (TG)n Simple_repeat Simple_repeat 2 24 0 183 42 0 0 chr6 120052452 120052476 -69227078 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 5600 152 40 25 chr6 120052453 120053362 -69226192 - L1MA6 LINE L1 -495 6447 5553 1664 163 0 78 chr6 120053362 120053693 -69225861 - AluJo SINE Alu -7 305 1 5600 152 40 25 chr6 120053693 120053777 -69225777 - L1MA6 LINE L1 -1389 5553 5472 1640 193 0 17 chr6 120053777 120054072 -69225482 + AluJo SINE Alu 1 290 -22 5600 152 40 25 chr6 120054072 120055055 -69224499 - L1MA6 LINE L1 -1470 5472 4280 4108 218 74 15 chr6 120055051 120056656 -69222898 - L1MA6 LINE L1 -3016 3772 1883 * 2956 273 131 48 chr6 120056669 120058439 -69221115 - L1MA6 LINE L1 -4871 1918 2 1679 111 146 32 chr6 120058610 120058890 -69220664 + AluSx SINE Alu 1 312 0 500 147 0 11 chr6 120061550 120061645 -69217909 + (GGAA)n Simple_repeat Simple_repeat 2 95 0 205 200 0 0 chr6 120061896 120061936 -69217618 + L2 LINE L2 3233 3272 0 24 0 0 0 chr6 120062036 120062060 -69217494 + AT_rich Low_complexity Low_complexity 1 24 0 4095 176 78 5 chr6 120062233 120063052 -69216502 + L1PA11 LINE L1 5295 6173 -1 1866 124 28 96 chr6 120063052 120063480 -69216074 + L1MB2 LINE L1 5769 6167 -4 290 217 212 26 chr6 120066702 120066844 -69212710 + MIR SINE MIR 15 182 -62 2191 100 0 32 chr6 120066882 120067192 -69212362 + AluSx SINE Alu 1 300 -12 231 247 12 12 chr6 120067207 120067288 -69212266 + L1M LINE L1 5348 5428 -734 364 113 0 0 chr6 120067442 120067495 -69212059 + Ricksha DNA DNA 2 54 -1992 2002 127 7 0 chr6 120067682 120067965 -69211589 + AluSq SINE Alu 17 301 -12 2224 76 0 40 chr6 120068167 120068533 -69211021 - AluSx SINE Alu 0 312 1 28 29 0 0 chr6 120068541 120068576 -69210978 + AT_rich Low_complexity Low_complexity 1 35 0 5627 131 38 58 chr6 120068576 120069794 -69209760 - L1MA7 LINE L1 -4 6287 5095 666 243 102 25 chr6 120070102 120070337 -69209217 - L2 LINE L2 -7 3306 3054 561 139 35 26 chr6 120071777 120071892 -69207662 - LTR33 LTR ERVL -3 518 403 501 257 14 20 chr6 120071900 120072048 -69207506 + MER69A DNA AcHobo 29 175 -2 253 284 37 28 chr6 120072254 120072363 -69207191 - LTR33 LTR ERVL -370 151 42 231 196 0 0 chr6 120072686 120072732 -69206822 + L2 LINE L2 3268 3313 0 31 26 0 0 chr6 120072915 120072953 -69206601 + AT_rich Low_complexity Low_complexity 1 38 0 258 150 117 33 chr6 120073347 120073407 -69206147 - MER116 DNA Mariner -3 77 13 207 69 0 0 chr6 120073709 120073738 -69205816 + (TG)n Simple_repeat Simple_repeat 2 30 0 1285 145 83 25 chr6 120074054 120074160 -69205394 - AluSx SINE Alu -56 256 158 2356 82 10 3 chr6 120074160 120074453 -69205101 - AluSc SINE Alu -14 295 1 1285 145 83 25 chr6 120074453 120074588 -69204966 - AluSx SINE Alu -154 158 1 207 318 122 9 chr6 120075310 120075417 -69204137 - L2 LINE L2 -11 3302 3184 2365 111 7 0 chr6 120075506 120075813 -69203741 - AluSq SINE Alu -4 309 1 1779 167 14 0 chr6 120077025 120077300 -69202254 + AluJb SINE Alu 1 279 -33 1585 184 66 61 chr6 120077415 120077855 -69201699 - L1ME1 LINE L1 -40 6126 5685 21 36 0 0 chr6 120077979 120078007 -69201547 + AT_rich Low_complexity Low_complexity 1 28 0 188 388 0 0 chr6 120078798 120078865 -69200689 + MIR3 SINE MIR 9 75 -133 23 33 0 0 chr6 120081754 120081784 -69197770 + GC_rich Low_complexity Low_complexity 1 30 0 205 277 31 15 chr6 120082935 120083000 -69196554 - L2 LINE L2 -1 3312 3247 1924 128 11 3 chr6 120084819 120085153 -69194401 - AluJb SINE Alu 0 336 1 2285 115 0 0 chr6 120085299 120085595 -69193959 - AluSx SINE Alu -16 296 1 504 296 52 0 chr6 120085804 120085939 -69193615 + MIR SINE MIR 2 143 -119 305 330 0 18 chr6 120086050 120086068 -69193486 + L1MC4 LINE L1 6597 6614 -1428 1807 145 4 7 chr6 120086068 120086344 -69193210 - AluJo SINE Alu -10 302 28 305 330 0 18 chr6 120086344 120086434 -69193120 + L1MC4 LINE L1 6614 6703 -1339 * 335 300 0 0 chr6 120086378 120086468 -69193086 - L1MC4 LINE L1 -1339 6703 6614 576 234 0 0 chr6 120086468 120086609 -69192945 + (CATATA)n Simple_repeat Simple_repeat 4 144 0 443 306 0 0 chr6 120086798 120086906 -69192648 - MIR3 SINE MIR -49 159 52 559 220 100 56 chr6 120087052 120087333 -69192221 + L1ME4a LINE L1 5751 6041 -80 1770 137 22 25 chr6 120087766 120088044 -69191510 + AluJo SINE Alu 11 287 -25 374 0 22 0 chr6 120088056 120088102 -69191452 + (CA)n Simple_repeat Simple_repeat 1 47 0 184 245 61 0 chr6 120090656 120090705 -69188849 - L2 LINE L2 -1 3271 3220 2210 99 0 50 chr6 120090800 120091123 -69188431 - AluSg SINE Alu -3 307 1 496 236 66 0 chr6 120091988 120092229 -69187325 - Charlie1 DNA MER1_type -4 2757 106 1262 228 183 47 chr6 120092680 120093033 -69186521 - L2 LINE L2 -1181 2133 1829 2411 82 26 0 chr6 120093033 120093336 -69186218 - AluSx SINE Alu -1 311 1 1262 228 183 47 chr6 120093336 120093579 -69185975 - L2 LINE L2 -1485 1829 1456 471 141 0 0 chr6 120095106 120095170 -69184384 + AluJ/FRAM SINE Alu 226 289 -23 2038 47 94 0 chr6 120095303 120095591 -69183963 + AluY SINE Alu 1 312 0 692 75 175 0 chr6 120096628 120096675 -69182879 + Tigger2 DNA MER2_type 2418 2455 -263 2647 48 0 6 chr6 120096675 120096988 -69182566 - AluY SINE Alu 0 311 1 692 75 175 0 chr6 120096988 120097060 -69182494 + Tigger2 DNA MER2_type 2455 2558 -160 317 104 0 0 chr6 120097061 120097109 -69182445 + Tigger2 DNA MER2_type 2511 2558 -160 1196 139 9 46 chr6 120097110 120097178 -69182376 + Tigger2 DNA MER2_type 2511 2580 -138 2166 93 0 53 chr6 120097178 120097480 -69182074 - AluSg SINE Alu -24 286 1 1196 139 9 46 chr6 120097480 120097627 -69181927 + Tigger2 DNA MER2_type 2580 2718 0 428 237 237 0 chr6 120098839 120098978 -69180576 + MIR SINE MIR 50 221 -41 1954 179 45 75 chr6 120099363 120099870 -69179684 + LTR22B LTR ERVK 1 492 0 3399 99 52 0 chr6 120100150 120100615 -69178939 + L1PA13 LINE L1 5656 6144 -19 265 298 10 39 chr6 120100697 120100801 -69178753 - MARNA DNA Mariner -106 480 380 2274 108 0 0 chr6 120101135 120101431 -69178123 - AluSc SINE Alu -13 296 1 610 161 54 18 chr6 120101433 120101545 -69178009 - AluSg/x SINE Alu -14 298 183 2260 105 0 7 chr6 120102025 120102321 -69177233 - AluSx SINE Alu -14 298 5 2288 71 10 17 chr6 120102574 120102868 -69176686 + AluSc SINE Alu 1 292 -17 2207 111 3 16 chr6 120104953 120105269 -69174285 + AluSx SINE Alu 1 312 0 249 268 21 79 chr6 120107122 120107238 -69172316 - L1ME LINE L1 -334 5787 5685 2258 96 7 7 chr6 120107238 120107539 -69172015 - AluSx SINE Alu -11 301 1 249 268 21 79 chr6 120107539 120107612 -69171942 - L1ME LINE L1 -436 5685 5609 276 276 35 0 chr6 120109146 120109233 -69170321 + Charlie7 DNA MER1_type 3 92 -2520 457 188 67 7 chr6 120109243 120109392 -69170162 + Charlie7 DNA MER1_type 2444 2601 -11 760 335 19 12 chr6 120109650 120109907 -69169647 + L3 LINE CR1 1244 1502 -75 341 257 88 0 chr6 120109959 120110095 -69169459 - L1ME3A LINE L1 -1 6169 6022 1683 91 0 0 chr6 120110318 120110559 -69168995 - L1MA6 LINE L1 -2 6298 6058 2874 120 11 4 chr6 120110560 120111034 -69168520 - L1MA6 LINE L1 -505 5795 5319 1895 249 156 30 chr6 120111217 120112312 -69167242 - L2 LINE L2 -8 3305 2074 280 320 107 13 chr6 120113153 120113303 -69166251 - MIR3 SINE MIR -5 203 40 600 273 66 52 chr6 120113611 120114382 -69165172 - L1MC4 LINE L1 0 8042 7262 257 312 123 6 chr6 120114445 120114615 -69164939 - MARNA DNA Mariner -251 335 146 745 215 53 29 chr6 120115554 120115763 -69163791 - L1ME3A LINE L1 -4 6166 5953 2029 108 17 20 chr6 120116584 120116881 -69162673 + AluSx SINE Alu 1 296 -16 489 235 195 7 chr6 120116882 120117031 -69162523 + MIR SINE MIR 15 191 -71 273 250 130 46 chr6 120118150 120118258 -69161296 + L2 LINE L2 3137 3253 -19 23 68 0 0 chr6 120118763 120118807 -69160747 + AT_rich Low_complexity Low_complexity 1 44 0 281 214 74 128 chr6 120119058 120119301 -69160253 - MER102a DNA MER1_type -4 326 97 180 238 0 0 chr6 120119602 120119665 -69159889 + (TA)n Simple_repeat Simple_repeat 1 63 0 260 158 18 0 chr6 120120087 120120144 -69159410 + (TA)n Simple_repeat Simple_repeat 1 58 0 1869 176 10 0 chr6 120120258 120120554 -69159000 - AluJb SINE Alu -13 299 1 1910 146 11 4 chr6 120120583 120120923 -69158631 - AluSx SINE Alu 0 342 1 2016 121 11 4 chr6 120120952 120121304 -69158250 - AluSx SINE Alu 0 354 1 2169 96 4 4 chr6 120121744 120122025 -69157529 + AluSp SINE Alu 1 281 -32 185 65 32 0 chr6 120122291 120122322 -69157232 + (CA)n Simple_repeat Simple_repeat 2 33 0 1186 289 103 13 chr6 120123401 120123662 -69155892 - MLT1K LTR MaLR -4 584 348 2047 137 0 3 chr6 120123662 120123954 -69155600 - AluJb SINE Alu -21 291 1 1186 289 103 13 chr6 120123954 120124224 -69155330 - MLT1K LTR MaLR -240 348 5 234 0 0 0 chr6 120125162 120125188 -69154366 + (CA)n Simple_repeat Simple_repeat 2 27 0 206 304 18 0 chr6 120125270 120125326 -69154228 - L2 LINE L2 -6 3266 3210 185 222 30 126 chr6 120125393 120125528 -69154026 - L2 LINE L2 -181 3091 2970 3400 18 0 0 chr6 120126720 120127112 -69152442 - L1PA4 LINE L1 -3 6152 5761 212 342 25 0 chr6 120127323 120127402 -69152152 - MIR SINE MIR -92 116 36 921 121 8 0 chr6 120127433 120127557 -69151997 + AluSq/x SINE Alu 1 125 -188 27 0 0 0 chr6 120127557 120127584 -69151970 + AT_rich Low_complexity Low_complexity 1 27 0 284 252 37 47 chr6 120127934 120128041 -69151513 + MIR3 SINE MIR 2 107 -101 277 301 72 0 chr6 120128092 120128175 -69151379 + L2 LINE L2 3155 3243 -29 * 300 235 154 29 chr6 120128144 120128280 -69151274 + MIR SINE MIR 68 220 -42 3719 122 23 60 chr6 120128960 120129648 -69149906 - L1PA16 LINE L1 -4 6162 5500 25 31 0 0 chr6 120130197 120130229 -69149325 + AT_rich Low_complexity Low_complexity 1 32 0 2232 117 13 3 chr6 120130279 120130586 -69148968 + AluSx SINE Alu 1 310 -2 204 276 35 0 chr6 120131592 120131650 -69147904 - L2 LINE L2 0 3272 3213 2044 133 14 0 chr6 120132307 120132601 -69146953 + AluSx SINE Alu 1 298 -14 464 198 117 9 chr6 120132728 120132839 -69146715 + L2 LINE L2 3180 3302 -11 2316 103 0 28 chr6 120132860 120133179 -69146375 + AluSg SINE Alu 1 310 0 225 241 74 0 chr6 120133212 120133266 -69146288 - MIR SINE MIR -115 147 90 315 254 176 28 chr6 120134191 120134333 -69145221 - L1ME LINE L1 -566 5555 5393 2091 98 0 85 chr6 120135378 120135706 -69143848 - AluSx SINE Alu -12 300 1 1846 177 0 10 chr6 120136654 120136953 -69142601 + AluJb SINE Alu 1 296 -16 2253 105 0 7 chr6 120137475 120137779 -69141775 + AluSq SINE Alu 1 302 -11 1890 155 7 0 chr6 120137786 120138076 -69141478 + AluJb SINE Alu 1 292 -20 216 0 0 0 chr6 120140086 120140110 -69139444 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2256 83 0 7 chr6 120140472 120140760 -69138794 - AluSc SINE Alu -23 286 1 1456 165 132 11 chr6 120140802 120141068 -69138486 - AluJb SINE Alu -4 298 1 331 324 27 64 chr6 120142012 120142139 -69137415 - MIR SINE MIR -20 242 125 207 0 0 0 chr6 120142139 120142162 -69137392 + (CAA)n Simple_repeat Simple_repeat 2 24 0 331 324 27 64 chr6 120142162 120142253 -69137301 - MIR SINE MIR -137 125 32 939 152 33 16 chr6 120142479 120142663 -69136891 - MER5A DNA MER1_type -2 187 1 22 0 0 0 chr6 120142877 120142899 -69136655 + AT_rich Low_complexity Low_complexity 1 22 0 2262 81 0 7 chr6 120143009 120143304 -69136250 + AluY SINE Alu 1 293 -18 182 262 0 0 chr6 120143754 120143796 -69135758 - MIR SINE MIR -63 145 104 401 268 8 55 chr6 120144064 120144191 -69135363 - L2 LINE L2 -2 3311 3191 1446 69 0 0 chr6 120144437 120144610 -69134944 - AluSg/x SINE Alu -5 307 135 26 30 0 0 chr6 120147141 120147174 -69132380 + AT_rich Low_complexity Low_complexity 1 33 0 1847 125 43 11 chr6 120147216 120147495 -69132059 - AluJb SINE Alu -24 288 1 1820 150 37 7 chr6 120149390 120149684 -69129870 + AluJb SINE Alu 1 303 -9 244 329 54 47 chr6 120150769 120150918 -69128636 + L2 LINE L2 3159 3308 -5 813 254 95 0 chr6 120151484 120151716 -69127838 - MIR SINE MIR 0 262 9 283 229 197 8 chr6 120151918 120152040 -69127514 - MER117 DNA MER1_type -48 149 5 2311 95 7 0 chr6 120152134 120152428 -69127126 + AluSx SINE Alu 1 296 -16 286 279 139 16 chr6 120152526 120152655 -69126899 + MER5A DNA MER1_type 43 187 -2 319 301 39 0 chr6 120153681 120153784 -69125770 - MIR SINE MIR -62 146 40 845 174 92 20 chr6 120154635 120154830 -69124724 - MER3 DNA MER1_type 0 209 1 902 165 0 0 chr6 120155125 120155258 -69124296 + FLAM_C SINE Alu 1 133 -10 660 167 0 0 chr6 120155359 120155479 -69124075 + GA-rich Low_complexity Low_complexity 1 120 0 392 286 18 53 chr6 120155660 120155831 -69123723 + MIR3 SINE MIR 36 200 -8 342 336 129 25 chr6 120155828 120156114 -69123440 + L3 LINE CR1 1251 1566 -11 * 1913 135 22 22 chr6 120156160 120156472 -69123082 + AluSx SINE Alu 1 312 0 2463 80 0 0 chr6 120156559 120156859 -69122695 + AluSg SINE Alu 1 300 -10 302 308 22 11 chr6 120157001 120157092 -69122462 + L2 LINE L2 2893 2984 -329 283 190 40 80 chr6 120157093 120157193 -69122361 - L2 LINE L2 -2 3311 3216 553 270 278 0 chr6 120157207 120157448 -69122106 + L2 LINE L2 3004 3311 -2 2266 90 0 17 chr6 120158767 120159066 -69120488 + AluSq SINE Alu 2 295 -18 22 70 0 0 chr6 120159392 120159435 -69120119 + AT_rich Low_complexity Low_complexity 1 43 0 304 165 177 25 chr6 120159704 120159783 -69119771 + L2 LINE L2 3174 3264 -8 1939 159 0 7 chr6 120160354 120160663 -69118891 + AluJb SINE Alu 5 311 -1 2125 109 6 16 chr6 120160914 120161227 -69118327 - AluSx SINE Alu -2 310 1 2224 222 54 87 chr6 120161227 120161618 -69117936 - L1MC5 LINE L1 -442 7519 7116 2165 108 7 7 chr6 120161618 120161923 -69117631 - AluSx SINE Alu -7 305 1 2224 222 54 87 chr6 120161923 120162369 -69117185 - L1MC5 LINE L1 -845 7116 6710 247 246 0 29 chr6 120162382 120162451 -69117103 - L1MC4a LINE L1 -1195 6613 6547 1554 184 4 4 chr6 120162452 120162713 -69116841 + AluJo SINE Alu 27 287 -25 501 278 62 116 chr6 120162789 120163461 -69116093 - HAL1b LINE L1 -613 735 100 1236 128 27 0 chr6 120163469 120163656 -69115898 - AluJb SINE Alu -7 305 114 301 308 0 0 chr6 120164441 120164532 -69115022 + MIR SINE MIR 172 262 0 230 290 173 27 chr6 120165384 120165497 -69114057 + MIR3 SINE MIR 8 130 -117 2167 137 38 38 chr6 120165752 120166117 -69113437 - MLT1A1 LTR MaLR 0 365 1 2151 128 0 0 chr6 120166772 120167076 -69112478 + AluSc SINE Alu 1 304 -5 938 117 0 0 chr6 120167354 120167482 -69112072 + AluSg/x SINE Alu 141 268 -44 471 355 151 23 chr6 120168139 120168663 -69110891 + L2 LINE L2 1824 2414 -900 716 221 20 72 chr6 120168709 120168823 -69110731 - MER69 DNA AcHobo -407 2119 2023 3623 128 77 5 chr6 120168823 120169392 -69110162 - MER4B LTR ERV1 0 610 1 716 221 20 72 chr6 120169392 120169526 -69110028 - MER69 DNA AcHobo -503 2023 1884 * 1236 211 97 38 chr6 120169509 120169938 -69109616 - MER69 DNA AcHobo -639 587 111 1722 183 162 37 chr6 120169952 120170439 -69109115 - LTR10A LTR ERV1 -61 548 1 350 195 230 0 chr6 120170439 120170523 -69109031 - MER69 DNA AcHobo -1115 111 8 2436 84 7 0 chr6 120170576 120170884 -69108670 - AluSx SINE Alu -2 310 1 2341 78 0 7 chr6 120172626 120172921 -69106633 + AluSx SINE Alu 2 294 -18 1549 150 112 11 chr6 120173448 120173715 -69105839 - AluJo SINE Alu -18 294 1 180 365 135 16 chr6 120173732 120173858 -69105696 - L2 LINE L2 -10 3262 3122 384 126 78 126 chr6 120174239 120174342 -69105212 - LTR48B LTR ERV1 0 787 690 5895 171 35 85 chr6 120174352 120175173 -69104381 - L1MA5 LINE L1 0 7362 6502 728 112 31 0 chr6 120175173 120175271 -69104283 - U6 snRNA snRNA -4 103 3 5895 171 35 85 chr6 120175271 120176272 -69103282 - L1MA5 LINE L1 -860 6502 5453 662 110 0 11 chr6 120176272 120176363 -69103191 - AluJ/FLAM SINE Alu -221 91 2 5895 171 35 85 chr6 120176363 120176559 -69102995 - L1MA5 LINE L1 -1909 5453 5393 1780 169 10 3 chr6 120176559 120176849 -69102705 - AluSx SINE Alu -20 292 1 5895 171 35 85 chr6 120176849 120177051 -69102503 - L1MA5 LINE L1 -1969 5393 5182 1010 207 87 89 chr6 120177051 120177145 -69102409 - L1MA5 LINE L1 -5275 1934 1841 2484 74 0 13 chr6 120177145 120177456 -69102098 - AluY SINE Alu -3 308 2 1010 207 87 89 chr6 120177456 120177549 -69102005 - L1MA5 LINE L1 -5368 1841 1749 2097 108 28 0 chr6 120177549 120177835 -69101719 - AluSc SINE Alu -15 294 1 1010 207 87 89 chr6 120177835 120178062 -69101492 - L1MA5 LINE L1 -5460 1749 1520 1014 189 78 48 chr6 120178120 120178602 -69100952 - LTR48B LTR ERV1 -98 689 1 524 130 0 0 chr6 120180286 120180355 -69099199 - AluJ/FRAM SINE Alu -23 289 221 319 125 36 0 chr6 120180576 120180632 -69098922 + L1M4 LINE L1 4620 4677 -1469 * 4398 160 48 57 chr6 120180628 120181078 -69098476 + L1MB5 LINE L1 4540 4992 -1182 2099 150 3 0 chr6 120181078 120181384 -69098170 + AluSx SINE Alu 1 307 -5 4398 160 48 57 chr6 120181384 120182582 -69096972 + L1MB5 LINE L1 4992 6165 -9 1390 235 35 57 chr6 120183032 120183492 -69096062 + L1ME3A LINE L1 5514 5962 -208 227 326 78 21 chr6 120183553 120183746 -69095808 + L1ME3A LINE L1 5962 6165 -5 210 272 19 29 chr6 120183904 120184007 -69095547 + A-rich Low_complexity Low_complexity 2 103 0 7596 29 0 1 chr6 120184093 120185275 -69094279 + L1PA2 LINE L1 4955 6134 -21 876 136 0 0 chr6 120185445 120185577 -69093977 + AluJb SINE Alu 176 307 -5 2376 133 160 22 chr6 120185679 120186123 -69093431 + MLT1D LTR MaLR 1 505 0 258 276 253 0 chr6 120186354 120186441 -69093113 + MIR SINE MIR 34 142 -66 1102 178 48 24 chr6 120186929 120187059 -69092495 - MER58C DNA MER1_type -2206 214 76 2367 83 0 3 chr6 120187059 120187360 -69092194 + AluSc SINE Alu 1 300 -9 1102 178 48 24 chr6 120187360 120187437 -69092117 - MER58C DNA MER1_type -2344 76 2 853 183 0 0 chr6 120187886 120188017 -69091537 - FLAM_A SINE Alu -2 131 1 2598 60 0 0 chr6 120188037 120188337 -69091217 + AluY SINE Alu 1 300 -11 2282 116 0 0 chr6 120188541 120188842 -69090712 + AluSx SINE Alu 1 301 -11 665 244 179 50 chr6 120188844 120189163 -69090391 + L1MC4a LINE L1 5589 5948 -1860 319 304 20 10 chr6 120191114 120191216 -69088338 + MIR3 SINE MIR 60 162 -46 249 310 0 14 chr6 120191650 120191721 -69087833 + L2 LINE L2 3201 3270 -2 272 71 0 24 chr6 120192332 120192374 -69087180 - Alu SINE Alu -258 42 2 327 282 195 0 chr6 120192701 120192850 -69086704 + MIR SINE MIR 78 255 -7 395 253 0 0 chr6 120192987 120193078 -69086476 + MER94 DNA DNA 3 93 -41 840 187 0 0 chr6 120193329 120193468 -69086086 + FLAM_C SINE Alu 1 139 -4 1533 201 14 7 chr6 120194516 120194810 -69084744 - AluJo SINE Alu -16 296 1 1004 261 16 8 chr6 120195466 120195723 -69083831 - MIR SINE MIR 0 262 4 413 113 0 175 chr6 120196309 120196406 -69083148 + MER20 DNA MER1_type 140 219 0 2195 91 4 0 chr6 120196966 120197242 -69082312 + AluSp SINE Alu 1 277 -36 717 113 6 45 chr6 120197243 120197420 -69082134 + (GGA)n Simple_repeat Simple_repeat 2 171 0 2100 92 14 7 chr6 120197599 120197891 -69081663 + AluSx SINE Alu 1 294 -18 214 385 58 52 chr6 120199546 120199946 -69079608 + L2 LINE L2 2190 2591 -723 184 319 104 30 chr6 120199984 120200119 -69079435 + MER5A DNA MER1_type 20 164 -25 2633 48 0 0 chr6 120200357 120200666 -69078888 + AluY SINE Alu 2 310 -1 1613 174 49 18 chr6 120200748 120201075 -69078479 - MER65A LTR ERV1 0 445 109 6827 91 25 39 chr6 120201082 120201799 -69077755 - L1MA3 LINE L1 -5 6300 5600 932 150 0 0 chr6 120201799 120201926 -69077628 - FLAM_C SINE Alu -6 127 1 6827 91 25 39 chr6 120201926 120202269 -69077285 - L1MA3 LINE L1 -705 5600 5254 743 150 8 0 chr6 120202286 120202406 -69077148 - MER65A LTR ERV1 -324 121 1 1881 268 95 36 chr6 120203227 120203895 -69075659 - L2 LINE L2 -2 3311 2547 1791 183 3 0 chr6 120203895 120204195 -69075359 + AluJb SINE Alu 1 301 -11 1881 268 95 36 chr6 120204195 120204568 -69074986 - L2 LINE L2 -766 2547 2197 323 297 29 40 chr6 120204673 120204848 -69074706 - L2 LINE L2 -1320 1994 1822 2379 79 7 0 chr6 120204939 120205231 -69074323 + AluSg SINE Alu 1 294 -16 1405 121 32 81 chr6 120205344 120205592 -69073962 + MER46A DNA MER2_type 1 236 0 599 210 164 73 chr6 120205593 120205665 -69073889 + MIR SINE MIR 3 67 -195 2467 87 0 0 chr6 120205665 120205965 -69073589 - AluSc SINE Alu -9 300 1 599 210 164 73 chr6 120205965 120206111 -69073443 + MIR SINE MIR 67 241 -21 1149 168 35 77 chr6 120206239 120206525 -69073029 - MLT1E3 LTR MaLR 0 624 351 700 293 145 48 chr6 120206527 120207050 -69072504 - L2 LINE L2 -2402 912 339 2279 109 3 0 chr6 120207649 120207951 -69071603 - AluSp SINE Alu -10 303 1 588 184 44 146 chr6 120208344 120208467 -69071087 + MIR SINE MIR 65 160 -102 2530 69 7 0 chr6 120208467 120208771 -69070783 - AluSc SINE Alu -3 306 1 588 184 44 146 chr6 120208771 120208853 -69070701 + MIR SINE MIR 160 249 -13 882 138 0 0 chr6 120210537 120210660 -69068894 + FLAM_A SINE Alu 13 135 -7 2007 129 4 0 chr6 120211392 120211703 -69067851 - AluSx SINE Alu 0 312 1 3891 211 98 55 chr6 120212568 120212757 -69066797 - L1ME LINE L1 -706 5460 5281 2280 87 0 0 chr6 120212757 120213046 -69066508 + AluSp SINE Alu 13 301 -12 3891 211 98 55 chr6 120213046 120213204 -69066350 - L1ME LINE L1 -885 5281 5131 2089 137 0 6 chr6 120213204 120213519 -69066035 - AluSq SINE Alu 0 313 1 3891 211 98 55 chr6 120213519 120213541 -69066013 - L1ME LINE L1 -1035 5131 5111 558 260 39 0 chr6 120213541 120213668 -69065886 - FLAM_C SINE Alu -1 132 1 767 218 0 0 chr6 120213671 120213804 -69065750 - FLAM_A SINE Alu 0 133 1 3891 211 98 55 chr6 120213804 120213847 -69065707 - L1ME LINE L1 -1056 5110 5070 2041 102 7 31 chr6 120213847 120214166 -69065388 - AluSq SINE Alu 0 312 1 3891 211 98 55 chr6 120214166 120214761 -69064793 - L1ME LINE L1 -1096 5070 4355 2371 93 3 0 chr6 120214761 120215063 -69064491 - AluSg SINE Alu -3 307 5 3891 211 98 55 chr6 120215063 120215393 -69064161 - L1ME LINE L1 -1811 4355 4041 259 228 18 0 chr6 120215585 120215642 -69063912 + L1MC4 LINE L1 7356 7413 -629 710 65 11 0 chr6 120215745 120215837 -69063717 + AluSc SINE Alu 204 296 -13 645 212 19 134 chr6 120215838 120216159 -69063395 + L1MC4 LINE L1 7753 8036 -6 393 228 20 0 chr6 120218137 120218238 -69061316 + L1MC4a LINE L1 5793 5895 -1913 24 0 0 0 chr6 120218389 120218413 -69061141 + AT_rich Low_complexity Low_complexity 1 24 0 1497 147 122 3 chr6 120218460 120218746 -69060808 - L1MB2 LINE L1 -1 6170 5851 327 300 0 0 chr6 120218950 120219030 -69060524 + L1ME4a LINE L1 5520 5599 -522 281 277 23 31 chr6 120219035 120219165 -69060389 + L1ME4a LINE L1 5624 5752 -369 426 244 247 11 chr6 120219500 120219771 -69059783 + L1ME4a LINE L1 5786 6120 -1 700 241 18 12 chr6 120220284 120220450 -69059104 + MIR SINE MIR 21 187 -75 1158 217 9 5 chr6 120220467 120220684 -69058870 - MER58A DNA MER1_type -5 219 2 1123 153 13 74 chr6 120220917 120221146 -69058408 - MER20 DNA MER1_type -4 215 1 1801 154 27 10 chr6 120221199 120221498 -69058056 + AluJo SINE Alu 1 304 -8 369 333 82 0 chr6 120221537 120221696 -69057858 + MIR SINE MIR 21 192 -70 2456 53 13 10 chr6 120221722 120222021 -69057533 + AluY SINE Alu 1 300 -11 196 269 246 8 chr6 120222734 120222868 -69056686 + L2 LINE L2 3107 3272 0 1145 135 6 0 chr6 120223016 120223186 -69056368 + AluSg/x SINE Alu 131 301 -11 1416 203 84 12 chr6 120223591 120223912 -69055642 - MER2 DNA MER2_type 0 344 1 1834 168 3 0 chr6 120224316 120224608 -69054946 - AluJo SINE Alu -19 293 1 2270 94 7 0 chr6 120224640 120224937 -69054617 + AluSq SINE Alu 1 299 -14 1143 126 0 0 chr6 120225359 120225518 -69054036 - AluSg/x SINE Alu -13 297 139 1546 173 65 12 chr6 120225913 120226237 -69053317 + LOR1a LTR ERV1 156 496 -1 1009 181 44 6 chr6 120226316 120226498 -69053056 - MER5A DNA MER1_type 0 189 1 1833 112 0 4 chr6 120226633 120226911 -69052643 - AluSc SINE Alu 0 305 29 263 277 59 34 chr6 120227039 120227158 -69052396 + MIR SINE MIR 102 223 -39 1749 137 12 76 chr6 120227164 120227493 -69052061 - AluJo SINE Alu -4 308 1 394 224 32 40 chr6 120227674 120227799 -69051755 + LTR16A LTR ERVL 327 450 0 749 221 74 0 chr6 120227801 120227950 -69051604 + HERV16 LTR ERVL 2 161 -4835 2178 122 0 7 chr6 120227950 120228254 -69051300 + AluSq SINE Alu 4 305 -8 673 227 30 130 chr6 120228256 120228555 -69050999 + MER93a LTR ERV1 134 402 0 396 0 0 0 chr6 120231162 120231206 -69048348 + (TG)n Simple_repeat Simple_repeat 1 44 0 1411 185 20 27 chr6 120231295 120231592 -69047962 - MLT1B LTR MaLR 0 390 96 885 127 0 0 chr6 120231611 120231729 -69047825 - AluJb SINE Alu -194 118 1 762 254 175 64 chr6 120232611 120233086 -69046468 + MLT1G1 LTR MaLR 27 595 0 371 231 0 0 chr6 120233306 120233384 -69046170 - MIR SINE MIR -96 166 89 2332 104 0 0 chr6 120233569 120233877 -69045677 + AluSg SINE Alu 1 308 -2 244 252 129 72 chr6 120234455 120234594 -69044960 - MIR SINE MIR -115 147 1 781 266 31 35 chr6 120235147 120235403 -69044151 - LTR8 LTR ERV1 -436 255 1 758 185 116 21 chr6 120235500 120235689 -69043865 - MER20 DNA MER1_type -12 207 1 329 230 71 39 chr6 120235826 120235945 -69043609 - MIR SINE MIR -6 256 142 25 0 0 0 chr6 120235945 120235970 -69043584 + AT_rich Low_complexity Low_complexity 1 25 0 329 230 71 39 chr6 120235970 120235981 -69043573 - MIR SINE MIR -120 142 133 2074 106 32 3 chr6 120235981 120236265 -69043289 - AluSp SINE Alu -21 292 1 2325 95 3 0 chr6 120236267 120236561 -69042993 - AluSx SINE Alu -17 295 1 329 230 71 39 chr6 120236561 120236686 -69042868 - MIR SINE MIR -129 133 14 323 214 48 48 chr6 120237607 120237710 -69041844 + LTR48B LTR ERV1 1 103 -541 1121 203 100 63 chr6 120237763 120238143 -69041411 + MER39 LTR ERV1 312 705 -2 1868 170 0 3 chr6 120238507 120238801 -69040753 - AluJo SINE Alu -19 293 1 380 255 20 0 chr6 120238837 120238935 -69040619 - MER112 DNA MER1_type -2 258 159 355 224 272 0 chr6 120239271 120239396 -69040158 - MER103 DNA DNA -4 162 4 600 278 159 25 chr6 120240729 120241049 -69038505 - L2 LINE L2 -1 3312 2950 1389 196 89 53 chr6 120241144 120241537 -69038017 + MER39 LTR ERV1 301 707 0 219 206 274 0 chr6 120241613 120241686 -69037868 + MIR SINE MIR 170 262 0 2078 98 14 4 chr6 120241794 120242101 -69037453 + AluSx SINE Alu 3 312 0 1009 181 44 6 chr6 120242236 120242418 -69037136 + MER5A DNA MER1_type 1 189 0 3018 140 44 11 chr6 120242497 120242975 -69036579 - LOR1a LTR ERV1 -1 496 3 189 326 56 0 chr6 120243622 120243711 -69035843 - MER5B DNA MER1_type -6 172 79 7188 52 19 0 chr6 120243851 120244900 -69034654 - L1PA8 LINE L1 0 6172 5190 4855 85 6 1 chr6 120244900 120245562 -69033992 + L1P LINE L1 4207 4871 -1275 22 0 0 0 chr6 120245615 120245637 -69033917 + AT_rich Low_complexity Low_complexity 1 22 0 1063 112 7 0 chr6 120245673 120245816 -69033738 - FRAM SINE Alu -22 154 11 2523 209 108 139 chr6 120245876 120246213 -69033341 - HAL1 LINE L1 -998 1509 1163 571 167 191 49 chr6 120246213 120246306 -69033248 - MER53 DNA DNA 0 189 111 2357 86 0 0 chr6 120246306 120246624 -69032930 - AluY SINE Alu 0 311 1 571 167 191 49 chr6 120246624 120246692 -69032862 - MER53 DNA DNA -78 111 5 2259 105 0 0 chr6 120246693 120246978 -69032576 - AluSx SINE Alu -18 294 10 2523 209 108 139 chr6 120246978 120247171 -69032383 - HAL1 LINE L1 -1344 1163 965 623 181 9 9 chr6 120247171 120247276 -69032278 + FLAM_C SINE Alu 3 107 -36 2523 209 108 139 chr6 120247276 120248195 -69031359 - HAL1 LINE L1 -1542 965 2 356 311 59 9 chr6 120248199 120248418 -69031136 - L1M4 LINE L1 -2394 3752 3523 356 222 25 0 chr6 120248418 120248499 -69031055 + CT-rich Low_complexity Low_complexity 4 86 0 1909 146 4 0 chr6 120248500 120248780 -69030774 - AluJb SINE Alu -31 281 1 790 299 103 25 chr6 120248793 120249980 -69029574 - L1M4 LINE L1 -2640 3506 2231 2312 93 3 13 chr6 120250096 120250398 -69029156 - AluSx SINE Alu -9 303 5 2247 113 0 7 chr6 120252217 120252526 -69027028 - AluSq SINE Alu -5 308 2 486 259 53 42 chr6 120252796 120252838 -69026716 + Charlie8 DNA MER1_type 38 78 -263 405 0 0 0 chr6 120252838 120252883 -69026671 + (TG)n Simple_repeat Simple_repeat 2 46 0 486 259 53 42 chr6 120252883 120253029 -69026525 + Charlie8 DNA MER1_type 78 228 -113 233 234 62 0 chr6 120253212 120253276 -69026278 - MIR3 SINE MIR -54 154 87 22 0 0 0 chr6 120253746 120253768 -69025786 + GC_rich Low_complexity Low_complexity 1 22 0 315 197 14 0 chr6 120253844 120253915 -69025639 - MER5A DNA MER1_type -83 106 35 498 291 90 30 chr6 120254207 120254441 -69025113 - MIR SINE MIR -7 255 8 445 345 7 0 chr6 120255307 120255446 -69024108 + MIR3 SINE MIR 38 177 -31 184 143 0 48 chr6 120255595 120255658 -69023896 + (TAAAAA)n Simple_repeat Simple_repeat 5 64 0 2335 122 0 0 chr6 120256781 120257093 -69022461 + AluSx SINE Alu 1 312 0 432 0 0 0 chr6 120257099 120257147 -69022407 + (TA)n Simple_repeat Simple_repeat 2 49 0 633 148 10 0 chr6 120257186 120257287 -69022267 + AluSg/x SINE Alu 192 293 -16 307 241 23 0 chr6 120257287 120257374 -69022180 - L1MC4 LINE L1 -1340 6702 6614 245 181 0 152 chr6 120257292 120257397 -69022157 + L1MC4 LINE L1 6614 6702 -1340 * 229 232 0 101 chr6 120257374 120257473 -69022081 - L1MC4 LINE L1 -1339 6703 6615 * 210 262 0 0 chr6 120257474 120257516 -69022038 + (TATG)n Simple_repeat Simple_repeat 2 43 0 360 333 0 0 chr6 120257525 120257705 -69021849 + (TA)n Simple_repeat Simple_repeat 1 180 0 252 111 0 0 chr6 120257706 120257751 -69021803 + LTR66 LTR ERVL 394 438 -172 575 170 132 0 chr6 120257913 120258019 -69021535 - FLAM_C SINE Alu -22 121 2 518 264 0 61 chr6 120258022 120258185 -69021369 + L2 LINE L2 3161 3313 0 290 253 13 13 chr6 120258256 120258331 -69021223 - MIR3 SINE MIR -119 89 15 2053 110 33 0 chr6 120258977 120259273 -69020281 - AluSx SINE Alu 0 305 1 1307 87 46 18 chr6 120259485 120259703 -69019851 - L1MA8 LINE L1 -7 6284 6061 2285 94 7 3 chr6 120259758 120260066 -69019488 + AluSx SINE Alu 1 309 -3 290 253 13 13 chr6 120260477 120260552 -69019002 + MIR3 SINE MIR 15 89 -119 518 264 0 61 chr6 120260623 120260786 -69018768 - L2 LINE L2 0 3313 3161 630 202 93 0 chr6 120260789 120260918 -69018636 + FLAM_C SINE Alu 2 142 -1 1532 235 149 19 chr6 120260918 120261718 -69017836 - L2 LINE L2 -151 3162 2241 1049 260 51 96 chr6 120261806 120262221 -69017333 + MLT1E LTR MaLR 1 396 -197 584 296 30 6 chr6 120262218 120262387 -69017167 + LTR16C LTR ERVL 103 275 -216 * 655 298 14 18 chr6 120262401 120262676 -69016878 + L1ME3A LINE L1 4790 5063 -1083 3092 15 0 0 chr6 120262698 120263071 -69016483 + L1PA2 LINE L1 5800 6172 0 1933 136 3 27 chr6 120263093 120263388 -69016166 - AluJo SINE Alu -24 288 1 834 285 31 24 chr6 120263446 120263737 -69015817 + L1ME3A LINE L1 5595 5887 -283 1494 188 28 88 chr6 120264074 120264307 -69015247 - MLT1A2 LTR MaLR 0 374 173 2304 70 7 20 chr6 120264307 120264631 -69014923 - AluSq SINE Alu 0 313 1 1494 188 28 88 chr6 120264631 120264795 -69014759 - MLT1A2 LTR MaLR -201 173 1 183 132 26 0 chr6 120265040 120265078 -69014476 + L2 LINE L2 3275 3313 0 5456 127 3 15 chr6 120265949 120266795 -69012759 + L1PA13 LINE L1 5327 6162 -1 241 170 0 196 chr6 120266903 120267015 -69012539 + L1MC4 LINE L1 7460 7549 -493 237 310 84 13 chr6 120267015 120267170 -69012384 - MLT1L LTR MaLR -409 206 41 1309 164 138 33 chr6 120267388 120267663 -69011891 + AluJo SINE Alu 5 308 -4 343 127 42 0 chr6 120267686 120267757 -69011797 + A-rich Low_complexity Low_complexity 3 76 0 233 250 139 0 chr6 120269016 120269124 -69010430 + L2 LINE L2 2901 3023 -249 299 24 0 24 chr6 120269909 120269950 -69009604 + (CA)n Simple_repeat Simple_repeat 2 41 0 2204 97 6 47 chr6 120270022 120270341 -69009213 + AluSx SINE Alu 1 306 -6 2269 226 81 68 chr6 120270850 120271488 -69008066 + MER97c DNA MER1_type? 3 631 -459 1035 164 11 0 chr6 120271488 120271665 -69007889 - L1MB5 LINE L1 0 6174 5996 2269 226 81 68 chr6 120271665 120271730 -69007824 + MER97c DNA MER1_type? 631 694 -396 324 70 0 0 chr6 120271730 120271773 -69007781 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2317 101 0 7 chr6 120271773 120272080 -69007474 - AluSq SINE Alu -8 305 1 2269 226 81 68 chr6 120272080 120272448 -69007106 + MER97c DNA MER1_type? 693 1090 0 707 231 48 36 chr6 120272572 120272823 -69006731 - MER34B LTR ERV1 0 565 312 1461 198 73 39 chr6 120272835 120272885 -69006669 + MSTD LTR MaLR 1 48 -348 952 107 0 0 chr6 120272885 120273007 -69006547 + FLAM_C SINE Alu 1 122 -11 1461 198 73 39 chr6 120273007 120273339 -69006215 + MSTD LTR MaLR 48 396 0 415 185 7 148 chr6 120273485 120273620 -69005934 - MER34B LTR ERV1 -449 116 1 576 246 8 0 chr6 120274272 120274394 -69005160 + MER69A DNA AcHobo 3 125 -52 4630 182 27 15 chr6 120274440 120275244 -69004310 - MER21B LTR ERV1 -49 814 1 341 190 0 0 chr6 120275251 120275309 -69004245 + MER69A DNA AcHobo 120 177 0 498 298 106 68 chr6 120275589 120276184 -69003370 - L1M4 LINE L1 -865 5281 4651 685 170 0 0 chr6 120276184 120276290 -69003264 - U6 snRNA snRNA -1 106 1 498 298 106 68 chr6 120276290 120276439 -69003115 - L1M4 LINE L1 -1495 4651 4509 1124 129 11 22 chr6 120277299 120277477 -69002077 + AluSg/x SINE Alu 137 312 0 582 144 221 0 chr6 120277884 120277988 -69001566 - FLAM_C SINE Alu -6 127 1 1342 222 53 14 chr6 120278707 120278991 -69000563 + MER58B DNA MER1_type 47 341 0 2118 70 44 4 chr6 120279407 120279703 -68999851 + AluY SINE Alu 1 307 0 219 69 0 0 chr6 120279740 120279769 -68999785 + (TG)n Simple_repeat Simple_repeat 1 29 0 4050 93 56 2 chr6 120281037 120281587 -68997967 - LTR19B LTR ERV1 0 580 1 317 378 46 46 chr6 120283067 120283263 -68996291 - L2 LINE L2 0 3272 3077 1054 204 158 4 chr6 120284559 120284799 -68994755 + MLT2B3 LTR ERVL 1 277 -277 272 236 8 31 chr6 120284799 120284926 -68994628 + (TA)n Simple_repeat Simple_repeat 2 125 0 295 113 75 0 chr6 120284950 120285003 -68994551 + MLT2B3 LTR ERVL 459 515 0 971 323 65 31 chr6 120285535 120286292 -68993262 + L2 LINE L2 2255 3037 -235 1328 186 24 4 chr6 120286405 120286657 -68992897 + L1ME1 LINE L1 5905 6161 -5 226 246 0 33 chr6 120286705 120286766 -68992788 + L2 LINE L2 3255 3313 0 215 163 41 0 chr6 120287436 120287485 -68992069 - MIR SINE MIR -61 147 97 2422 223 88 20 chr6 120290337 120290995 -68988559 - L1ME3 LINE L1 -1 6161 5459 227 250 70 47 chr6 120291347 120291388 -68988166 - LTR67 LTR ERVL -9 548 509 456 84 0 158 chr6 120291388 120291483 -68988071 + MADE1 DNA Mariner 1 80 0 227 250 70 47 chr6 120291483 120291569 -68987985 - LTR67 LTR ERVL -48 509 418 2225 93 0 35 chr6 120292094 120292406 -68987148 - AluSc SINE Alu -8 301 1 1620 150 10 51 chr6 120292651 120292776 -68986778 + AluJb SINE Alu 22 151 -161 2120 75 29 59 chr6 120292776 120293082 -68986472 + AluSp SINE Alu 1 297 -16 1620 150 10 51 chr6 120293082 120293249 -68986305 + AluJb SINE Alu 151 302 -10 479 319 37 0 chr6 120293699 120293862 -68985692 + MIR3 SINE MIR 16 184 -24 255 133 0 0 chr6 120295339 120295384 -68984170 + (TC)n Simple_repeat Simple_repeat 2 46 0 1734 121 57 19 chr6 120295390 120295655 -68983899 - AluSx SINE Alu -37 275 1 35 0 0 0 chr6 120295704 120295739 -68983815 + AT_rich Low_complexity Low_complexity 1 35 0 305 319 31 59 chr6 120295757 120295930 -68983624 - L1ME LINE L1 -366 5755 5590 1317 162 54 73 chr6 120295930 120296245 -68983309 - AluJb SINE Alu -3 309 1 305 319 31 59 chr6 120296245 120296325 -68983229 - L1ME LINE L1 -531 5590 5509 3427 164 44 53 chr6 120296325 120296659 -68982895 + L1MD2 LINE L1 5599 5934 -425 2140 136 0 0 chr6 120296659 120296953 -68982601 - AluSx SINE Alu -18 294 1 3427 164 44 53 chr6 120296953 120297321 -68982233 + L1MD2 LINE L1 5934 6295 -64 366 234 122 65 chr6 120297324 120297431 -68982123 - FLAM_A SINE Alu -11 122 10 343 146 0 0 chr6 120297442 120297497 -68982057 + L1MD2 LINE L1 6295 6349 -10 417 248 119 0 chr6 120298111 120298212 -68981342 - ERVL LTR ERVL -3495 2269 2157 2010 147 10 0 chr6 120298215 120298514 -68981040 + AluJo SINE Alu 1 302 -10 276 333 53 25 chr6 120298670 120298913 -68980641 - ERVL LTR ERVL -4653 1111 862 1503 221 85 29 chr6 120299330 120299636 -68979918 + MSTD LTR MaLR 1 333 -63 2411 66 0 3 chr6 120299636 120299941 -68979613 - AluY SINE Alu -7 304 1 1503 221 85 29 chr6 120299941 120300009 -68979545 + MSTD LTR MaLR 333 396 0 4587 165 81 30 chr6 120300040 120300926 -68978628 + MER21A LTR ERV1 1 931 0 317 254 97 22 chr6 120301132 120301266 -68978288 - LTR33 LTR ERVL 0 521 378 581 291 129 17 chr6 120301284 120301525 -68978029 - LTR33 LTR ERVL -253 268 1 2247 336 121 21 chr6 120301576 120303407 -68976147 - L2 LINE L2 -1018 2296 283 1507 167 0 60 chr6 120304410 120304733 -68974821 + AluJo SINE Alu 1 305 0 1970 142 6 6 chr6 120306428 120306739 -68972815 - AluJb SINE Alu -1 311 1 763 284 43 73 chr6 120306742 120306955 -68972599 - L1ME LINE L1 -4981 1089 871 2043 125 3 0 chr6 120306955 120307258 -68972296 - AluSx SINE Alu -8 304 1 763 284 43 73 chr6 120307258 120307697 -68971857 - L1ME LINE L1 -5199 871 557 859 222 39 10 chr6 120307697 120307900 -68971654 + MER3 DNA MER1_type 1 209 0 763 284 43 73 chr6 120307900 120307940 -68971614 - L1ME LINE L1 -5513 557 517 711 304 60 65 chr6 120308115 120308578 -68970976 - L1ME LINE L1 -5604 466 6 643 322 42 55 chr6 120308856 120309350 -68970204 - MLT1K LTR MaLR -15 573 86 307 130 0 0 chr6 120311891 120311937 -68967617 + MER5A DNA MER1_type 57 102 -87 2242 244 48 53 chr6 120312028 120312303 -68967251 + MER20B DNA MER1_type 8 283 -500 2103 117 3 10 chr6 120312303 120312611 -68966943 - AluSx SINE Alu -6 306 1 2242 244 48 53 chr6 120312611 120312908 -68966646 + MER20B DNA MER1_type 283 580 -203 1798 85 4 0 chr6 120312908 120313143 -68966411 - AluSp SINE Alu -13 300 65 2242 244 48 53 chr6 120313143 120313323 -68966231 + MER20B DNA MER1_type 580 759 -24 2131 126 0 0 chr6 120313323 120313632 -68965922 + AluSx SINE Alu 1 309 -3 2242 244 48 53 chr6 120313632 120313651 -68965903 + MER20B DNA MER1_type 759 777 -6 827 144 0 0 chr6 120313766 120313884 -68965670 + FLAM_C SINE Alu 1 118 -15 423 0 0 0 chr6 120313884 120313931 -68965623 + (CA)n Simple_repeat Simple_repeat 2 48 0 1888 189 30 22 chr6 120314004 120314375 -68965179 - MLT1A2 LTR MaLR 0 374 1 351 0 0 0 chr6 120314883 120314922 -68964632 + (TG)n Simple_repeat Simple_repeat 2 40 0 192 97 0 0 chr6 120314954 120314985 -68964569 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1287 168 9 5 chr6 120314990 120315210 -68964344 - AluJb SINE Alu -37 275 55 283 317 30 10 chr6 120315216 120315316 -68964238 + MIR3 SINE MIR 61 162 -46 334 304 51 20 chr6 120315316 120315465 -68964089 + MER5A DNA MER1_type 4 164 -15 573 245 164 13 chr6 120315467 120315626 -68963928 - MER5A DNA MER1_type -3 186 4 948 128 0 0 chr6 120315785 120315918 -68963636 - FLAM_C SINE Alu 0 133 1 2129 129 6 2 chr6 120315927 120316258 -68963296 + L1PA16 LINE L1 5784 6111 -55 3704 104 0 2 chr6 120316259 120316757 -68962797 - LOR1a LTR ERV1 0 497 1 600 104 0 73 chr6 120316765 120316789 -68962765 - LOR1a-int LTR ERV1 -2 8118 8094 2286 105 63 26 chr6 120316789 120317140 -68962414 + THE1B LTR MaLR 1 364 0 11860 92 9 5 chr6 120317140 120318714 -68960840 + THE1B-int LTR MaLR 1 1580 0 2382 102 51 20 chr6 120318714 120319067 -68960487 + THE1B LTR MaLR 1 364 0 600 104 0 73 chr6 120319067 120319136 -68960418 - LOR1a-int LTR ERV1 -23 8097 8030 * 800 123 0 22 chr6 120319135 120319273 -68960281 - LOR1-int LTR ERV1 -2056 6064 5930 24 0 0 0 chr6 120319310 120319334 -68960220 + AT_rich Low_complexity Low_complexity 1 24 0 368 337 46 29 chr6 120320499 120320674 -68958880 - MIR3 SINE MIR -15 193 16 237 33 0 0 chr6 120321242 120321272 -68958282 + (TC)n Simple_repeat Simple_repeat 1 30 0 1162 283 205 41 chr6 120321332 120321887 -68957667 + MER115 DNA AcHobo 47 692 -1 2139 102 3 3 chr6 120322297 120322621 -68956933 + AluSp SINE Alu 1 324 0 1731 138 0 7 chr6 120323648 120323938 -68955616 + AluSx SINE Alu 33 312 0 191 337 47 24 chr6 120324616 120324785 -68954769 + L2 LINE L2 3127 3299 -14 386 287 0 20 chr6 120325624 120325725 -68953829 + MIR SINE MIR 89 187 -75 205 245 41 0 chr6 120325855 120325904 -68953650 + CT-rich Low_complexity Low_complexity 3 53 0 223 250 69 132 chr6 120327223 120327367 -68952187 - MIR SINE MIR -47 215 81 267 242 50 40 chr6 120328064 120328163 -68951391 - MIR SINE MIR -67 195 96 390 253 165 44 chr6 120328362 120328544 -68951010 + MIR SINE MIR 52 255 -7 40 49 0 0 chr6 120328546 120328607 -68950947 + AT_rich Low_complexity Low_complexity 1 61 0 656 226 297 8 chr6 120328626 120328729 -68950825 - L1MD2 LINE L1 -74 6285 6213 192 40 0 0 chr6 120328729 120328754 -68950800 + (TG)n Simple_repeat Simple_repeat 2 26 0 656 226 297 8 chr6 120328754 120328889 -68950665 - L1MD2 LINE L1 -146 6213 5978 537 90 0 0 chr6 120329352 120329430 -68950124 - Alu SINE Alu -4 305 228 693 227 70 104 chr6 120329729 120330028 -68949526 + ERVL-F LTR ERVL 5468 5756 -8 1403 266 60 60 chr6 120330028 120330691 -68948863 + MLT2F LTR ERVL 1 663 0 232 331 96 73 chr6 120331349 120331527 -68948027 - L2 LINE L2 -70 3202 3021 2196 104 0 0 chr6 120332327 120332625 -68946929 - AluSx SINE Alu -14 298 1 2138 96 0 34 chr6 120333647 120333970 -68945584 - AluSq SINE Alu 0 313 2 24 32 0 0 chr6 120334032 120334063 -68945491 + AT_rich Low_complexity Low_complexity 1 31 0 413 238 56 8 chr6 120335110 120335236 -68944318 + MIR SINE MIR 75 206 -56 2043 103 35 0 chr6 120335801 120336091 -68943463 + AluSq SINE Alu 1 300 -13 185 224 149 30 chr6 120336169 120336236 -68943318 + MIR3 SINE MIR 113 187 -21 500 127 13 0 chr6 120337272 120337351 -68942203 + MADE1 DNA Mariner 1 80 0 181 288 49 122 chr6 120337800 120337882 -68941672 - L2 LINE L2 -13 3259 3173 1761 167 79 19 chr6 120337882 120338248 -68941306 + MLT1B LTR MaLR 3 390 0 181 288 49 122 chr6 120338248 120338370 -68941184 - L2 LINE L2 -99 3173 3070 1869 137 10 17 chr6 120339869 120340162 -68939392 - AluJb SINE Alu -20 292 2 22 0 0 0 chr6 120340165 120340187 -68939367 + AT_rich Low_complexity Low_complexity 1 22 0 456 287 153 6 chr6 120340263 120340420 -68939134 + MER5A DNA MER1_type 10 189 0 270 276 65 41 chr6 120341103 120341226 -68938328 - MIR SINE MIR -109 153 28 216 348 35 0 chr6 120341978 120342093 -68937461 - MIR SINE MIR -30 232 114 489 311 34 7 chr6 120342101 120342249 -68937305 - MIR SINE MIR -80 182 31 743 288 5 5 chr6 120342583 120342774 -68936780 - MER117 DNA MER1_type -5 192 2 4393 145 97 45 chr6 120342817 120343766 -68935788 + pTR5 LTR ERV1 741 2025 -413 367 204 31 20 chr6 120343766 120343864 -68935690 + LTR30 LTR ERV1 544 642 -80 2336 113 3 0 chr6 120343864 120344190 -68935364 + pTR5 LTR ERV1 66 392 -2046 2387 116 300 23 chr6 120344865 120344998 -68934556 + LTR35 LTR ERV1 1 96 -522 1714 153 24 0 chr6 120344998 120345286 -68934268 + AluJo SINE Alu 3 297 -15 2387 116 300 23 chr6 120345286 120345566 -68933988 + LTR35 LTR ERV1 96 297 -321 216 0 0 0 chr6 120345566 120345590 -68933964 + (TC)n Simple_repeat Simple_repeat 1 24 0 2387 116 300 23 chr6 120345590 120345659 -68933895 + LTR35 LTR ERV1 297 618 0 916 178 57 73 chr6 120345678 120345925 -68933629 + LTR35-int LTR ERV1 414 656 -5290 200 111 28 0 chr6 120346101 120346137 -68933417 + CT-rich Low_complexity Low_complexity 2 38 0 443 83 0 0 chr6 120346362 120346422 -68933132 + LTR35-int LTR ERV1 879 938 -848 1428 199 66 40 chr6 120346422 120347043 -68932511 + LTR35-int LTR ERV1 52 1497 -4449 743 129 22 22 chr6 120347097 120347236 -68932318 + LTR35-int LTR ERV1 1482 1620 -3260 22 35 0 0 chr6 120347265 120347294 -68932260 + AT_rich Low_complexity Low_complexity 1 29 0 18816 184 17 16 chr6 120347339 120348959 -68930595 + L1P LINE L1 999 2616 -3530 3090 57 3 0 chr6 120348959 120349313 -68930241 - THE1A LTR MaLR 0 355 1 18816 184 17 16 chr6 120349313 120351342 -68928212 + L1P LINE L1 2616 4650 -1496 1892 158 0 19 chr6 120351342 120351652 -68927902 + AluJb SINE Alu 1 304 -8 18816 184 17 16 chr6 120351652 120352007 -68927547 + L1P LINE L1 4650 5003 -1143 3492 190 64 59 chr6 120352007 120352907 -68926647 + LTR35-int LTR ERV1 1701 2505 -3441 6237 120 94 150 chr6 120352920 120354564 -68924990 - pTR5 LTR ERV1 -143 2295 743 1041 219 15 15 chr6 120354563 120354764 -68924790 + LTR35-int LTR ERV1 3216 3416 -4121 * 1741 86 9 0 chr6 120354772 120354993 -68924561 + AluSc SINE Alu 1 223 -86 1616 204 77 73 chr6 120355078 120355443 -68924111 + LTR35-int LTR ERV1 1844 2206 -2710 2339 95 0 13 chr6 120355443 120355760 -68923794 + AluSq SINE Alu 1 313 0 1616 204 77 73 chr6 120355760 120356483 -68923071 + LTR35-int LTR ERV1 2206 3222 -1694 1906 153 21 0 chr6 120356484 120356772 -68922782 + AluJb SINE Alu 1 294 -18 1747 168 17 23 chr6 120356797 120357240 -68922314 + LTR35-int LTR ERV1 4140 4651 -285 377 186 108 10 chr6 120357211 120357313 -68922241 + LTR35-int LTR ERV1 5943 6054 -277 * 436 290 134 14 chr6 120357492 120357709 -68921845 + LTR35-int LTR ERV1 6411 6653 -23 3098 123 156 36 chr6 120357729 120358281 -68921273 + LTR35 LTR ERV1 1 618 0 217 171 0 0 chr6 120358485 120358520 -68921034 - MIR SINE MIR -62 146 112 2237 112 0 0 chr6 120359194 120359489 -68920065 + AluSg SINE Alu 1 295 -15 845 150 0 8 chr6 120359540 120359673 -68919881 + FLAM_C SINE Alu 2 133 0 297 293 106 8 chr6 120359678 120359801 -68919753 - MIR3 SINE MIR -43 165 31 2123 113 3 3 chr6 120359931 120360224 -68919330 + AluSx SINE Alu 3 295 -17 547 264 62 0 chr6 120360446 120360590 -68918964 + MIR SINE MIR 63 215 -47 1789 167 3 7 chr6 120360666 120360959 -68918595 - AluJb SINE Alu -14 298 7 863 161 161 34 chr6 120361693 120361773 -68917781 + Charlie1 DNA MER1_type 12 80 -2681 2511 70 7 0 chr6 120361773 120362072 -68917482 - AluSx SINE Alu -11 301 1 863 161 161 34 chr6 120362072 120362196 -68917358 + Charlie1 DNA MER1_type 80 242 -2519 638 215 0 0 chr6 120362177 120362307 -68917247 + Charlie1 DNA MER1_type 2620 2749 -12 * 1577 200 65 33 chr6 120362819 120363080 -68916474 - Charlie5 DNA MER1_type 0 2624 2373 1977 60 0 4 chr6 120363080 120363329 -68916225 + AluY SINE Alu 64 311 0 1577 200 65 33 chr6 120363329 120363570 -68915984 - Charlie5 DNA MER1_type -251 2373 1 326 281 48 62 chr6 120363629 120363839 -68915715 - L1ME4a LINE L1 -13 6108 5902 552 210 19 6 chr6 120363937 120364099 -68915455 + GA-rich Low_complexity Low_complexity 4 167 0 1224 166 217 8 chr6 120364144 120364379 -68915175 + AluJo SINE Alu 1 284 -18 195 103 0 0 chr6 120364521 120364550 -68915004 - L2 LINE L2 -366 2948 2920 236 203 35 98 chr6 120364678 120364821 -68914733 - HAL1b LINE L1 -28 1320 1187 2296 100 3 10 chr6 120364882 120365192 -68914362 - AluSq SINE Alu -5 308 1 28 48 0 0 chr6 120365199 120365241 -68914313 + AT_rich Low_complexity Low_complexity 1 42 0 2046 194 0 22 chr6 120365387 120365758 -68913796 + MLT1A1 LTR MaLR 1 363 -2 378 194 89 32 chr6 120365891 120366015 -68913539 - L1ME4a LINE L1 -2029 5779 5649 811 299 102 35 chr6 120366052 120366544 -68913010 - L1MC/D LINE L1 -2030 5778 5254 4575 135 57 7 chr6 120366594 120367281 -68912273 + MER72 LTR ERV1 2 722 0 2175 119 0 0 chr6 120367324 120367617 -68911937 + AluSx SINE Alu 2 294 -18 2066 199 89 18 chr6 120368292 120368750 -68910804 + LTR54 LTR ERV1 20 510 0 1895 161 0 7 chr6 120368809 120369107 -68910447 - AluJo SINE Alu -14 298 3 2092 108 0 7 chr6 120369202 120369523 -68910031 - AluSx SINE Alu 0 319 1 343 335 108 13 chr6 120369948 120370106 -68909448 + MIR3 SINE MIR 30 202 -6 758 120 0 0 chr6 120371241 120371349 -68908205 - L1MA2 LINE L1 0 6304 6197 362 100 83 0 chr6 120371352 120371412 -68908142 + L1M2 LINE L1 5491 5555 -757 * 14325 151 16 17 chr6 120371401 120371984 -68907570 - L1M1 LINE L1 -743 5403 4821 1644 115 0 4 chr6 120371984 120372210 -68907344 - AluSx SINE Alu -87 225 1 14325 151 16 17 chr6 120372210 120374328 -68905226 - L1M1 LINE L1 -1325 4821 2783 530 247 6 57 chr6 120374334 120374492 -68905062 + LOR1-int LTR ERV1 1951 2100 -4231 682 167 28 61 chr6 120374500 120374702 -68904852 + LOR1-int LTR ERV1 1358 3119 -282 1840 138 14 17 chr6 120374719 120374892 -68904662 - AluJb SINE Alu -23 289 116 216 0 0 0 chr6 120374892 120374916 -68904638 + (TG)n Simple_repeat Simple_repeat 1 24 0 1840 138 14 17 chr6 120374916 120375032 -68904522 - AluJb SINE Alu -196 116 1 576 204 45 87 chr6 120375034 120375298 -68904256 + LOR1-int LTR ERV1 1222 1474 -6646 2647 180 106 105 chr6 120375313 120375498 -68904056 + LOR1-int LTR ERV1 1686 1869 -4847 2077 114 0 28 chr6 120375498 120375788 -68903766 - AluSx SINE Alu -29 283 2 2647 180 106 105 chr6 120375788 120376877 -68902677 + LOR1-int LTR ERV1 1869 4783 -1933 480 143 275 0 chr6 120376890 120376981 -68902573 - FLAM_C SINE Alu -15 118 3 701 171 0 0 chr6 120377037 120377142 -68902412 - Tigger1 DNA MER2_type -2312 106 2 1975 147 3 7 chr6 120377167 120377473 -68902081 - AluJo SINE Alu -2 310 6 916 181 13 106 chr6 120377549 120377786 -68901768 - AluJo SINE Alu -92 220 6 1966 133 0 3 chr6 120378549 120378834 -68900720 + AluJb SINE Alu 5 288 -24 201 74 0 0 chr6 120378849 120378876 -68900678 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 6228 148 11 23 chr6 120379266 120379411 -68900143 - L1MC1 LINE L1 -61 6272 6127 2304 85 6 25 chr6 120379411 120379727 -68899827 - AluSg SINE Alu 0 310 1 6228 148 11 23 chr6 120379727 120380746 -68898808 - L1MC1 LINE L1 -206 6127 5123 213 39 0 0 chr6 120382357 120382383 -68897171 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 1883 170 0 3 chr6 120382670 120382982 -68896572 - AluJo SINE Alu -1 311 1 1692 158 7 10 chr6 120383150 120383442 -68896112 + AluJo SINE Alu 21 311 -1 217 344 70 16 chr6 120384045 120384173 -68895381 - MER91A DNA MER1_type -46 150 16 2660 113 11 21 chr6 120385221 120385600 -68893954 + THE1C LTR MaLR 1 375 0 854 242 72 0 chr6 120387236 120387430 -68892124 + MER63A DNA MER1_type 2 209 -1 199 274 68 27 chr6 120387501 120387574 -68891980 + MIR SINE MIR 113 188 -74 1555 185 7 11 chr6 120387612 120387888 -68891666 + AluJo SINE Alu 1 275 -37 575 180 30 10 chr6 120387889 120387989 -68891565 + AluJo SINE Alu 33 134 -178 1892 123 7 43 chr6 120388013 120388150 -68891404 + AluSq SINE Alu 1 141 -172 2354 87 0 3 chr6 120388150 120388449 -68891105 + AluY SINE Alu 1 298 -13 1892 123 7 43 chr6 120388449 120388613 -68890941 + AluSq SINE Alu 141 291 -22 285 98 0 0 chr6 120388617 120388658 -68890896 + (TA)n Simple_repeat Simple_repeat 2 42 0 297 0 0 0 chr6 120388658 120388691 -68890863 + (CA)n Simple_repeat Simple_repeat 2 34 0 2427 189 70 107 chr6 120388742 120388929 -68890625 + LTR8A LTR ERV1 1 193 -534 2313 113 0 3 chr6 120388929 120389238 -68890316 + AluSx SINE Alu 1 308 -4 2427 189 70 107 chr6 120389238 120389805 -68889749 + LTR8A LTR ERV1 193 727 0 201 39 0 0 chr6 120390501 120390527 -68889027 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1909 149 0 7 chr6 120390535 120390823 -68888731 - AluJb SINE Alu -24 288 3 304 202 77 87 chr6 120390872 120390976 -68888578 + L2 LINE L2 3160 3262 -10 * 917 272 53 4 chr6 120390957 120391200 -68888354 - MIR SINE MIR -3 259 5 21 89 0 0 chr6 120391276 120391332 -68888222 + AT_rich Low_complexity Low_complexity 1 56 0 1972 150 41 77 chr6 120391571 120392010 -68887544 + MLT1C LTR MaLR 1 423 -44 229 305 32 42 chr6 120392511 120392606 -68886948 - L2 LINE L2 -1 3312 3219 24 0 0 0 chr6 120392931 120392955 -68886599 + AT_rich Low_complexity Low_complexity 1 24 0 461 244 0 52 chr6 120393707 120393822 -68885732 - L2 LINE L2 -2 3270 3162 1407 83 0 0 chr6 120393968 120394137 -68885417 - AluSg SINE Alu -141 169 1 337 147 40 53 chr6 120394185 120394260 -68885294 - L1MEc LINE L1 -4164 2232 2159 4414 254 70 36 chr6 120394260 120394543 -68885011 - L1MEc LINE L1 -4518 1878 1606 1003 151 6 19 chr6 120394543 120394702 -68884852 + FRAM SINE Alu 1 157 -9 4414 254 70 36 chr6 120394702 120395317 -68884237 - L1MEc LINE L1 -4790 1606 1013 2130 138 0 0 chr6 120395317 120395615 -68883939 + AluSx SINE Alu 1 298 -14 4414 254 70 36 chr6 120395615 120396333 -68883221 - L1MEc LINE L1 -5383 1013 196 1032 179 143 44 chr6 120396333 120396606 -68882948 - AluJb SINE Alu -2 300 1 4414 254 70 36 chr6 120396606 120396729 -68882825 - L1MEc LINE L1 -6200 196 79 1439 197 126 46 chr6 120396773 120397139 -68882415 - MSTD LTR MaLR -1 395 1 266 186 0 0 chr6 120397140 120397183 -68882371 - L1MEc LINE L1 -6313 83 41 229 35 0 0 chr6 120397236 120397265 -68882289 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 2021 85 11 21 chr6 120397265 120397547 -68882007 - AluSg SINE Alu -31 279 1 2376 88 3 22 chr6 120397826 120398145 -68881409 - AluSp SINE Alu 0 313 1 2600 121 33 17 chr6 120399463 120399883 -68879671 - MSTA LTR MaLR 0 428 2 677 237 64 84 chr6 120399948 120400306 -68879248 - L1MC4 LINE L1 -1 8041 7691 1879 151 41 0 chr6 120400382 120400720 -68878834 - L1MDa LINE L1 -4349 2191 1840 1126 252 80 19 chr6 120400720 120401354 -68878200 - L1MC4 LINE L1 -484 7558 6837 * 1614 228 114 13 chr6 120401349 120401805 -68877749 + L1MC4a LINE L1 5421 5922 -1886 2227 112 0 16 chr6 120402166 120402478 -68877076 + AluSg SINE Alu 1 307 -3 478 129 0 86 chr6 120403673 120403766 -68875788 + AluJ/FRAM SINE Alu 221 305 -7 761 154 0 0 chr6 120405427 120405544 -68874010 - FLAM_C SINE Alu -16 117 1 24 96 0 0 chr6 120405545 120405618 -68873936 + AT_rich Low_complexity Low_complexity 1 73 0 2454 80 0 6 chr6 120406397 120406709 -68872845 + AluY SINE Alu 1 310 -1 1622 154 63 3 chr6 120406804 120407090 -68872464 - AluJo SINE Alu -9 303 1 21 0 0 0 chr6 120407394 120407415 -68872139 + AT_rich Low_complexity Low_complexity 1 21 0 412 302 127 19 chr6 120407579 120407791 -68871763 + MIR SINE MIR 12 246 -16 269 325 25 0 chr6 120408083 120408163 -68871391 - MIR SINE MIR -140 122 41 2074 114 65 0 chr6 120408191 120408481 -68871073 + AluSx SINE Alu 1 309 -3 1949 134 0 32 chr6 120408494 120408807 -68870747 + AluJb SINE Alu 1 303 -9 192 225 25 113 chr6 120408854 120408934 -68870620 + L2 LINE L2 3241 3313 0 569 243 193 0 chr6 120408973 120409154 -68870400 + L1MC4 LINE L1 7539 7754 -288 24 0 0 0 chr6 120409632 120409656 -68869898 + AT_rich Low_complexity Low_complexity 1 24 0 416 290 141 20 chr6 120410229 120410484 -68869070 - L2 LINE L2 -2 3311 3026 456 242 52 20 chr6 120410657 120410810 -68868744 + L1ME4a LINE L1 5633 5790 -331 254 208 26 13 chr6 120410844 120410921 -68868633 + L1ME4a LINE L1 6044 6121 0 2428 83 0 3 chr6 120410929 120411230 -68868324 + AluSc SINE Alu 1 300 -9 381 64 0 0 chr6 120411230 120411277 -68868277 - LTR47A LTR ERVL -403 49 3 3322 139 35 16 chr6 120411448 120412023 -68867531 + LTR60 LTR ERV1 1 586 0 4376 125 4 58 chr6 120412155 120412885 -68866669 + LTR8 LTR ERV1 1 691 0 1843 208 63 8 chr6 120412907 120413306 -68866248 + MLT1C LTR MaLR 38 458 -9 611 248 113 108 chr6 120413323 120413702 -68865852 - LTR16A LTR ERVL -71 386 6 402 263 26 0 chr6 120414172 120414286 -68865268 - L3 LINE CR1 -264 1313 1197 2165 125 0 7 chr6 120414820 120415117 -68864437 + AluSx SINE Alu 2 296 -16 2781 70 5 8 chr6 120415230 120415602 -68863952 - L1PA8 LINE L1 0 6172 5802 272 347 135 5 chr6 120415676 120415975 -68863579 - L2 LINE L2 -218 3054 2727 2338 128 89 13 chr6 120415977 120416368 -68863186 + MSTA LTR MaLR 1 421 -7 1097 179 20 10 chr6 120416370 120416592 -68862962 + AluJo SINE Alu 87 310 0 500 315 142 3 chr6 120416602 120416904 -68862650 - L2 LINE L2 -575 2739 2396 1935 118 18 7 chr6 120417333 120417642 -68861912 - AluSg SINE Alu 0 312 1 1551 197 94 90 chr6 120417764 120418127 -68861427 + MER34B LTR ERV1 11 378 -187 2339 100 0 13 chr6 120418127 120418438 -68861116 - AluSg SINE Alu -1 309 3 1551 197 94 90 chr6 120418438 120418627 -68860927 + MER34B LTR ERV1 378 565 0 186 269 60 0 chr6 120418695 120418762 -68860792 + MIR SINE MIR 71 141 -121 656 298 45 44 chr6 120418816 120419188 -68860366 - MLT1J2 LTR MaLR -10 399 21 1287 228 63 91 chr6 120419443 120419925 -68859629 - MER34 LTR ERV1 0 542 77 252 0 44 44 chr6 120419925 120419970 -68859584 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 1287 228 63 91 chr6 120419970 120420045 -68859509 - MER34 LTR ERV1 -465 77 1 27 0 0 0 chr6 120420474 120420501 -68859053 + AT_rich Low_complexity Low_complexity 1 27 0 1682 157 83 46 chr6 120420501 120421017 -68858537 - MER39 LTR ERV1 -95 612 28 4399 118 14 50 chr6 120421017 120421597 -68857957 - LTR8 LTR ERV1 0 691 140 2155 101 0 7 chr6 120421597 120421884 -68857670 + AluSx SINE Alu 26 310 -2 4399 118 14 50 chr6 120421884 120422020 -68857534 - LTR8 LTR ERV1 -551 140 1 1682 157 83 46 chr6 120422020 120422050 -68857504 - MER39 LTR ERV1 -679 28 1 240 209 15 30 chr6 120422213 120422280 -68857274 + L2 LINE L2 3194 3259 -54 2190 113 7 0 chr6 120424215 120424507 -68855047 + AluSx SINE Alu 17 310 -2 590 118 10 0 chr6 120424998 120425100 -68854454 + (GA)n Simple_repeat Simple_repeat 2 104 0 1520 92 5 0 chr6 120425200 120425395 -68854159 + AluSp SINE Alu 101 296 -17 1217 124 52 31 chr6 120425397 120425590 -68853964 + THE1B LTR MaLR 168 364 0 9123 93 21 1 chr6 120425590 120426796 -68852758 + THE1B-int LTR MaLR 1 1230 -350 2043 101 38 17 chr6 120426797 120427085 -68852469 + THE1B LTR MaLR 71 364 0 2029 210 115 40 chr6 120427085 120427830 -68851724 - MER52A LTR ERV1 -681 597 140 183 306 176 9 chr6 120427885 120427993 -68851561 - L2 LINE L2 -18 3295 3170 794 241 46 14 chr6 120428037 120428253 -68851301 + MIR SINE MIR 21 243 -19 532 296 34 17 chr6 120428311 120428544 -68851010 - L2 LINE L2 -836 2478 2242 430 267 33 17 chr6 120428549 120428669 -68850885 - L3 LINE CR1 -417 1160 1039 521 107 0 13 chr6 120429176 120429251 -68850303 - LTR49 LTR ERV1 0 595 522 1636 143 66 0 chr6 120429255 120429514 -68850040 + AluJb SINE Alu 4 279 -33 1084 233 31 112 chr6 120429516 120430241 -68849313 + MER52A LTR ERV1 660 1453 -302 746 213 0 0 chr6 120430253 120430413 -68849141 + MER52A LTR ERV1 1596 1755 0 2072 147 108 99 chr6 120430438 120431003 -68848551 - LTR29 LTR ERV1 -52 570 1 1637 151 19 26 chr6 120431513 120431778 -68847776 + AluJo SINE Alu 1 263 -49 1045 250 20 111 chr6 120432202 120432305 -68847249 - MER34 LTR ERV1 0 542 431 396 0 0 0 chr6 120432305 120432349 -68847205 + (TG)n Simple_repeat Simple_repeat 2 45 0 610 195 76 8 chr6 120432349 120432467 -68847087 - FLAM_A SINE Alu -7 126 1 1045 250 20 111 chr6 120432467 120432958 -68846596 - MER34 LTR ERV1 -109 433 1 238 333 20 10 chr6 120433352 120433454 -68846100 - L3 LINE CR1 -849 728 626 1082 156 6 0 chr6 120433558 120433718 -68845836 + FRAM SINE Alu 1 159 -17 276 293 50 0 chr6 120434105 120434204 -68845350 + MIR3 SINE MIR 2 105 -103 2039 123 20 0 chr6 120434931 120435231 -68844323 + AluSx SINE Alu 1 306 -6 3398 130 42 56 chr6 120436141 120436395 -68843159 + MER39B LTR ERV1 1 257 -396 1422 163 137 19 chr6 120436395 120436665 -68842889 + AluJo SINE Alu 1 302 0 3398 130 42 56 chr6 120436665 120437031 -68842523 + MER39B LTR ERV1 257 612 -41 2285 125 72 95 chr6 120437327 120437382 -68842172 - LTR54 LTR ERV1 -2 508 453 2924 90 68 172 chr6 120437382 120437758 -68841796 + MER4B LTR ERV1 1 276 -334 2091 133 3 0 chr6 120437758 120438052 -68841502 - AluSq SINE Alu -18 295 1 2924 90 68 172 chr6 120438052 120438354 -68841200 + MER4B LTR ERV1 276 608 -2 2285 125 72 95 chr6 120438354 120438801 -68840753 - LTR54 LTR ERV1 -57 453 18 324 151 27 41 chr6 120438800 120438873 -68840681 + U13 snRNA snRNA 2 73 -31 * 247 197 0 49 chr6 120438882 120438943 -68840611 + A-rich Low_complexity Low_complexity 4 61 0 407 175 0 0 chr6 120438964 120439079 -68840475 + L1MC2 LINE L1 5192 5267 -879 7667 119 28 15 chr6 120439080 120440247 -68839307 + Tigger1 DNA MER2_type 2 1183 -1235 1153 146 0 11 chr6 120440247 120440425 -68839129 + AluJb SINE Alu 134 309 -3 7571 123 41 11 chr6 120440428 120441636 -68837918 + Tigger1 DNA MER2_type 1174 2418 0 3662 149 40 22 chr6 120441636 120442304 -68837250 + L1MC2 LINE L1 5361 6041 -299 2344 129 77 12 chr6 120442304 120442706 -68836848 + MSTA LTR MaLR 1 428 0 8374 145 5 98 chr6 120442708 120443114 -68836440 + MSTA-int LTR MaLR 3 445 -1135 2433 98 0 0 chr6 120443114 120443421 -68836133 - AluY SINE Alu -4 307 1 8374 145 5 98 chr6 120443421 120444754 -68834800 + MSTA-int LTR MaLR 445 1580 0 2354 145 86 0 chr6 120444754 120445148 -68834406 + MSTA LTR MaLR 1 428 0 1325 149 39 65 chr6 120445148 120445175 -68834379 + L1MC2 LINE L1 6036 6062 -282 2276 139 103 0 chr6 120445175 120445563 -68833991 - MSTA LTR MaLR 0 428 1 1325 149 39 65 chr6 120445563 120445843 -68833711 + L1MC2 LINE L1 6062 6335 -9 2375 80 0 3 chr6 120445955 120446255 -68833299 - AluY SINE Alu -12 299 1 234 150 0 0 chr6 120446644 120446684 -68832870 + (TG)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr6 120447354 120447375 -68832179 + AT_rich Low_complexity Low_complexity 1 21 0 23 92 0 0 chr6 120448519 120448584 -68830970 + AT_rich Low_complexity Low_complexity 1 65 0 1253 146 13 35 chr6 120449016 120449242 -68830312 - MLT1A1 LTR MaLR 0 365 145 238 225 0 0 chr6 120449243 120449310 -68830244 - AluSq SINE Alu 0 308 242 1029 155 13 0 chr6 120449310 120449465 -68830089 - AluSq SINE Alu -156 157 1 817 144 17 13 chr6 120449467 120449629 -68829925 - MLT1A1 LTR MaLR -208 166 2 516 90 0 0 chr6 120449954 120450021 -68829533 + MSTA LTR MaLR 1 67 -361 273 159 0 0 chr6 120450019 120450063 -68829491 + MSTB LTR MaLR 383 426 0 * 10098 176 17 3 chr6 120450063 120451692 -68827862 + MSTA-int LTR MaLR 1 1651 0 2467 150 61 10 chr6 120451692 120452099 -68827455 + MSTA LTR MaLR 1 428 0 2041 184 44 73 chr6 120452606 120453178 -68826376 - MER34B LTR ERV1 0 565 11 1698 266 98 49 chr6 120453520 120454198 -68825356 + L2 LINE L2 2292 2935 -378 3956 132 34 14 chr6 120454198 120454837 -68824717 + MER39B LTR ERV1 1 652 -1 1698 266 98 49 chr6 120454837 120454905 -68824649 + L2 LINE L2 2935 2998 -315 2014 115 0 14 chr6 120454905 120455219 -68824335 + AluSx SINE Alu 1 310 0 1698 266 98 49 chr6 120455219 120455434 -68824120 + L2 LINE L2 2998 3299 -14 180 111 0 0 chr6 120455434 120455461 -68824093 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 365 0 0 22 chr6 120456297 120456343 -68823211 + (TG)n Simple_repeat Simple_repeat 2 46 0 1975 133 0 23 chr6 120456361 120456661 -68822893 + AluJb SINE Alu 1 293 -19 21 36 0 0 chr6 120456673 120456701 -68822853 + AT_rich Low_complexity Low_complexity 1 28 0 1702 179 9 107 chr6 120456736 120457166 -68822388 + MLT1B LTR MaLR 1 388 -2 24 53 0 0 chr6 120458179 120458217 -68821337 + AT_rich Low_complexity Low_complexity 1 38 0 1640 171 39 0 chr6 120458230 120458511 -68821043 + AluJb SINE Alu 5 296 -16 2222 119 0 0 chr6 120458626 120458945 -68820609 + AluSx SINE Alu 1 312 0 689 285 152 63 chr6 120459021 120459836 -68819718 + L1MC4a LINE L1 5283 6170 -1638 3970 156 60 15 chr6 120460554 120461221 -68818333 - MER72 LTR ERV1 0 722 26 220 352 14 0 chr6 120462874 120462945 -68816609 - MIR SINE MIR -119 89 18 338 313 43 76 chr6 120462948 120463159 -68816395 + L2 LINE L2 2976 3179 -93 2247 90 21 3 chr6 120463171 120463459 -68816095 - AluSc SINE Alu -16 293 1 2223 117 0 7 chr6 120463459 120463768 -68815786 - AluSq SINE Alu -6 307 1 829 132 16 8 chr6 120463797 120463914 -68815640 + FLAM_C SINE Alu 3 123 -179 405 116 0 0 chr6 120463914 120463983 -68815571 + (TA)n Simple_repeat Simple_repeat 1 69 0 829 132 16 8 chr6 120463983 120463994 -68815560 + FLAM_C SINE Alu 123 132 -170 3788 207 102 20 chr6 120463994 120464824 -68814730 + L1M4 LINE L1 3905 4844 -1302 857 181 0 0 chr6 120464824 120464957 -68814597 + FLAM_C SINE Alu 1 133 0 3788 207 102 20 chr6 120464957 120465197 -68814357 + L1M4 LINE L1 4844 5063 -1083 2398 66 3 33 chr6 120465204 120465507 -68814047 + AluY SINE Alu 1 294 -17 1966 207 68 43 chr6 120465912 120466380 -68813174 + MLT2B1 LTR ERVL 1 480 -40 365 120 74 25 chr6 120466396 120466640 -68812914 + (TA)n Simple_repeat Simple_repeat 1 256 0 185 0 0 39 chr6 120467407 120467433 -68812121 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 225 279 25 51 chr6 120468297 120468376 -68811178 - MIR3 SINE MIR -19 189 113 213 234 0 170 chr6 120468493 120468543 -68811011 - MIR SINE MIR -61 147 155 546 285 89 87 chr6 120468543 120468992 -68810562 - MLT1J2 LTR MaLR 0 450 1 213 234 0 170 chr6 120468992 120469035 -68810519 - MIR SINE MIR -52 156 107 2255 169 21 52 chr6 120469125 120469351 -68810203 - MLT2D LTR ERVL 0 414 205 1847 134 7 7 chr6 120469351 120469659 -68809895 - AluJo SINE Alu 0 308 1 2255 169 21 52 chr6 120469659 120469858 -68809696 - MLT2D LTR ERVL -209 205 1 773 185 23 0 chr6 120470142 120470272 -68809282 - AluJb SINE Alu -178 134 2 1814 159 40 3 chr6 120470293 120470594 -68808960 + AluJo SINE Alu 1 312 0 235 196 54 0 chr6 120470594 120470650 -68808904 + GA-rich Low_complexity Low_complexity 4 62 0 207 0 0 0 chr6 120471168 120471191 -68808363 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1090 183 139 52 chr6 120471208 120471315 -68808239 - AluJb SINE Alu -38 274 178 2475 71 0 0 chr6 120471315 120471611 -68807943 - AluSq SINE Alu -16 297 2 1090 183 139 52 chr6 120471611 120471755 -68807799 - AluJb SINE Alu -134 178 1 1756 176 6 6 chr6 120471787 120472099 -68807455 + AluJo SINE Alu 1 312 0 276 291 121 55 chr6 120472239 120472404 -68807150 - L3 LINE CR1 -109 1468 1293 256 271 139 32 chr6 120472597 120472848 -68806706 - L1MC4a LINE L1 -1639 6169 5892 1364 287 64 14 chr6 120472860 120473359 -68806195 - L1MC4a LINE L1 -1994 5814 5291 2107 163 100 35 chr6 120473717 120474177 -68805377 + LTR2B LTR ERV1 1 490 0 1097 221 14 9 chr6 120474211 120474433 -68805121 + MER58A DNA MER1_type 1 223 -1 312 190 22 44 chr6 120474438 120474575 -68804979 + GA-rich Low_complexity Low_complexity 6 139 0 199 239 0 0 chr6 120475623 120475669 -68803885 - MIR SINE MIR -112 150 105 475 240 164 34 chr6 120475689 120476068 -68803486 - L1MC4a LINE L1 -1635 6173 5746 1636 172 50 7 chr6 120476069 120476348 -68803206 - AluJo SINE Alu -16 296 6 417 273 70 21 chr6 120477338 120477481 -68802073 + L3b LINE CR1 1421 1570 -13 1963 149 3 0 chr6 120477855 120478163 -68801391 + AluSx SINE Alu 1 309 -3 1022 277 89 35 chr6 120478946 120479340 -68800214 + LTR33 LTR ERVL 44 458 -63 204 67 0 0 chr6 120479407 120479437 -68800117 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 37 23 0 0 chr6 120479581 120479625 -68799929 + AT_rich Low_complexity Low_complexity 1 44 0 2160 113 0 3 chr6 120481347 120481639 -68797915 + AluSx SINE Alu 1 291 -21 1447 95 5 0 chr6 120482013 120482202 -68797352 - AluSp SINE Alu -5 308 119 680 168 88 8 chr6 120482404 120482529 -68797025 + AluSg/x SINE Alu 173 307 -5 2443 84 0 7 chr6 120482627 120482936 -68796618 + AluSq SINE Alu 3 309 -4 2346 87 0 7 chr6 120483202 120483500 -68796054 - AluSc SINE Alu -13 296 1 495 215 205 15 chr6 120483929 120484134 -68795420 - MIR SINE MIR -3 259 16 2019 110 3 73 chr6 120484272 120484599 -68794955 - AluSq SINE Alu -9 304 1 849 146 0 0 chr6 120485778 120485908 -68793646 - AluSq/x SINE Alu -182 130 1 296 240 77 143 chr6 120485913 120486075 -68793479 - MLT1C LTR MaLR -197 270 134 1967 164 0 16 chr6 120486075 120486387 -68793167 + AluJb SINE Alu 2 308 -4 296 240 77 143 chr6 120486387 120486511 -68793043 - MLT1C LTR MaLR -333 134 3 288 298 23 15 chr6 120486514 120486645 -68792909 - L1M4 LINE L1 -1809 4337 4206 262 301 32 21 chr6 120486723 120486816 -68792738 - L2 LINE L2 -11 3302 3209 2354 88 3 0 chr6 120486936 120487233 -68792321 + AluSp SINE Alu 1 298 -15 1845 182 0 10 chr6 120487534 120487847 -68791707 + AluJo SINE Alu 1 310 -2 24 67 0 0 chr6 120488254 120488299 -68791255 + AT_rich Low_complexity Low_complexity 1 45 0 2332 112 0 0 chr6 120488351 120488655 -68790899 + AluSq SINE Alu 1 304 -9 377 260 128 51 chr6 120488904 120489100 -68790454 - Charlie7 DNA MER1_type -2094 518 308 361 229 156 8 chr6 120489364 120489486 -68790068 - Charlie7 DNA MER1_type -2472 140 1 2385 88 0 25 chr6 120490004 120490142 -68789412 + AluSg SINE Alu 1 141 -169 2191 113 3 3 chr6 120490142 120490444 -68789110 + AluSx SINE Alu 1 302 -10 2385 88 0 25 chr6 120490444 120490623 -68788931 + AluSg SINE Alu 141 310 0 480 193 23 0 chr6 120492516 120492604 -68786950 + MIR SINE MIR 55 144 -118 1570 199 95 17 chr6 120492670 120493017 -68786537 + MLT1A2 LTR MaLR 1 374 0 1114 261 68 75 chr6 120493343 120493959 -68785595 + HAL1 LINE L1 326 937 -1570 21 0 0 0 chr6 120493965 120493986 -68785568 + AT_rich Low_complexity Low_complexity 1 21 0 1708 188 0 17 chr6 120493991 120494283 -68785271 + AluJo SINE Alu 1 287 -25 429 243 28 40 chr6 120495068 120495245 -68784309 + HAL1 LINE L1 947 1121 -1386 690 139 0 0 chr6 120495250 120495351 -68784203 + AluSq/x SINE Alu 6 106 -207 * 716 189 0 0 chr6 120495350 120495461 -68784093 + AluJb SINE Alu 185 295 -17 1279 128 0 0 chr6 120495521 120495851 -68783703 + AluSx SINE Alu 109 438 0 735 151 0 0 chr6 120495864 120495990 -68783564 + GA-rich Low_complexity Low_complexity 1 126 0 356 235 96 0 chr6 120496020 120496156 -68783398 + HAL1 LINE L1 1166 1314 -1193 896 186 47 17 chr6 120496156 120496328 -68783226 + AluJo SINE Alu 122 298 -14 2140 96 4 0 chr6 120496329 120496609 -68782945 + AluSc SINE Alu 1 281 -28 227 97 0 0 chr6 120496609 120496640 -68782914 + (TAAA)n Simple_repeat Simple_repeat 2 148 0 1456 276 72 4 chr6 120496678 120497306 -68782248 + L1MC4a LINE L1 5156 5332 -814 2230 125 3 0 chr6 120497360 120497671 -68781883 + AluSx SINE Alu 1 312 0 2554 60 0 0 chr6 120497809 120498111 -68781443 + AluY SINE Alu 3 304 -7 749 153 31 26 chr6 120498542 120498781 -68780773 - MLT1A2 LTR MaLR 0 374 1 364 305 61 41 chr6 120498832 120498951 -68780603 + L1ME LINE L1 4528 4643 -1503 833 211 23 11 chr6 120498951 120499126 -68780428 + MER5B DNA MER1_type 2 178 0 364 305 61 41 chr6 120499126 120499301 -68780253 + L1ME LINE L1 4643 4828 -1318 2092 133 24 0 chr6 120499304 120499598 -68779956 + AluSq SINE Alu 1 301 -12 180 0 0 0 chr6 120499598 120499618 -68779936 + (TA)n Simple_repeat Simple_repeat 2 21 0 354 272 72 55 chr6 120499928 120500097 -68779457 + L1ME LINE L1 5373 5538 -583 1932 150 3 16 chr6 120500097 120500403 -68779151 + AluSx SINE Alu 1 302 -10 354 272 72 55 chr6 120500403 120500608 -68778946 + L1ME LINE L1 5538 5750 -371 760 170 68 0 chr6 120500656 120500803 -68778751 + L1MB3 LINE L1 5450 5606 -577 2255 61 17 20 chr6 120500806 120501099 -68778455 + AluSq SINE Alu 2 293 -20 1591 132 53 95 chr6 120501099 120501420 -68778134 + L1MB3 LINE L1 5819 6152 -31 2109 125 10 3 chr6 120501420 120501716 -68777838 + AluSp SINE Alu 1 298 -15 2240 113 3 0 chr6 120501716 120502017 -68777537 + AluSq SINE Alu 1 302 -11 1591 132 53 95 chr6 120501717 120502017 -68777537 + L1MB3 LINE L1 6152 6463 280 2181 103 7 13 chr6 120502017 120502318 -68777236 + AluSg SINE Alu 1 299 -11 2383 102 0 0 chr6 120502328 120502622 -68776932 + AluSx SINE Alu 1 294 -18 1591 132 53 95 chr6 120502622 120502667 -68776887 + L1MB3 LINE L1 6136 6181 -2 2339 92 0 10 chr6 120503506 120503809 -68775745 + AluSx SINE Alu 1 300 -12 1794 138 17 34 chr6 120504244 120504540 -68775014 - AluJo SINE Alu -21 291 1 361 302 40 60 chr6 120504802 120505050 -68774504 + L1ME3A LINE L1 5588 5830 -340 2116 102 46 0 chr6 120505106 120505390 -68774164 - AluY SINE Alu -14 297 1 198 0 0 0 chr6 120505570 120505592 -68773962 + (TTGG)n Simple_repeat Simple_repeat 3 24 0 1016 77 23 8 chr6 120505808 120505938 -68773616 + AluSg SINE Alu 1 132 -178 222 121 35 17 chr6 120505938 120505996 -68773558 + (TA)n Simple_repeat Simple_repeat 2 60 0 308 208 10 73 chr6 120506006 120506102 -68773452 + L1MC4 LINE L1 6614 6703 -1339 1175 128 0 0 chr6 120506124 120506288 -68773266 + AluSg SINE Alu 125 288 -22 22 0 0 0 chr6 120506288 120506310 -68773244 + AT_rich Low_complexity Low_complexity 1 22 0 578 280 81 31 chr6 120506549 120506810 -68772744 - LTR33 LTR ERVL -237 284 11 1874 141 29 0 chr6 120507031 120507308 -68772246 + AluJb SINE Alu 5 289 -23 21 36 0 0 chr6 120507450 120507478 -68772076 + AT_rich Low_complexity Low_complexity 1 28 0 305 284 0 0 chr6 120507563 120507644 -68771910 + L1ME LINE L1 5534 5614 -507 2100 73 0 4 chr6 120507645 120507906 -68771648 + AluY SINE Alu 36 295 -16 864 163 0 0 chr6 120507923 120508058 -68771496 - AluJb SINE Alu -177 135 1 460 270 40 46 chr6 120508317 120508469 -68771085 + MIR SINE MIR 85 235 -27 2074 144 0 3 chr6 120509571 120509877 -68769677 + AluSx SINE Alu 1 305 -7 406 147 9 264 chr6 120510451 120510500 -68769054 + MER5B DNA MER1_type 7 67 -111 1346 45 4 146 chr6 120510500 120510551 -68769003 + L1MA5 LINE L1 6082 6139 -161 1842 181 51 0 chr6 120510551 120510882 -68768672 + MER7A DNA MER2_type 1 346 0 1346 45 4 146 chr6 120510882 120510916 -68768638 + L1MA5 LINE L1 6139 6176 -124 1795 189 0 10 chr6 120510916 120511229 -68768325 - AluJb SINE Alu -2 310 1 1346 45 4 146 chr6 120511229 120511388 -68768166 + L1MA5 LINE L1 6176 6292 -8 406 147 9 264 chr6 120511388 120511503 -68768051 + MER5B DNA MER1_type 67 210 32 2301 93 13 3 chr6 120511503 120511804 -68767750 + AluY SINE Alu 1 304 -7 406 147 9 264 chr6 120511804 120511824 -68767730 + MER5B DNA MER1_type 210 126 -52 1738 136 34 31 chr6 120511824 120512118 -68767436 + AluJb SINE Alu 11 305 -7 406 147 9 264 chr6 120512118 120512162 -68767392 + MER5B DNA MER1_type 125 178 0 234 261 182 0 chr6 120512366 120512454 -68767100 - L2 LINE L2 -16 3256 3153 764 250 62 13 chr6 120512498 120512722 -68766832 - MIR SINE MIR -8 254 20 3256 149 0 6 chr6 120512932 120513456 -68766098 - L1PA16 LINE L1 0 6166 5646 2116 140 0 0 chr6 120514508 120514808 -68764746 - AluSq SINE Alu -13 300 1 9916 185 68 29 chr6 120514883 120516573 -68762981 + ERVL LTR ERVL 3274 4897 -867 2297 104 3 0 chr6 120516573 120516871 -68762683 + AluSp SINE Alu 1 299 -14 9916 185 68 29 chr6 120516871 120517032 -68762522 + ERVL LTR ERVL 4897 5050 -714 1830 138 60 7 chr6 120517032 120517315 -68762239 + AluSx SINE Alu 1 298 -14 9916 185 68 29 chr6 120517315 120517551 -68762003 + ERVL LTR ERVL 5050 5443 -321 352 77 31 0 chr6 120517553 120517618 -68761936 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 2271 106 3 0 chr6 120517704 120518006 -68761548 + AluSp SINE Alu 1 303 -10 619 164 64 0 chr6 120518158 120518268 -68761286 + FLAM_C SINE Alu 1 117 -16 201 333 91 20 chr6 120518344 120518443 -68761111 + L2 LINE L2 2923 3028 -285 433 183 0 0 chr6 120518443 120518525 -68761029 + AluS SINE Alu 230 311 -1 971 140 0 0 chr6 120518573 120518716 -68760838 + FLAM_C SINE Alu 1 143 0 28 29 0 0 chr6 120518727 120518762 -68760792 + AT_rich Low_complexity Low_complexity 1 35 0 2209 103 7 0 chr6 120519526 120519826 -68759728 + AluSx SINE Alu 1 302 -10 1104 143 0 0 chr6 120523695 120523849 -68755705 - AluSq SINE Alu -26 287 134 2267 103 3 7 chr6 120523849 120524149 -68755405 - AluSx SINE Alu -11 301 3 672 152 88 8 chr6 120524247 120524372 -68755182 - AluSg/x SINE Alu -5 307 173 2353 76 3 0 chr6 120524696 120524984 -68754570 - AluSg SINE Alu -21 289 1 390 278 112 33 chr6 120525556 120525672 -68753882 + L1MC4a LINE L1 5494 5599 -2209 2175 97 0 0 chr6 120525672 120525939 -68753615 + AluSx SINE Alu 1 267 -45 390 278 112 33 chr6 120525939 120526153 -68753401 + L1MC4a LINE L1 5599 5924 -1884 962 180 22 0 chr6 120526155 120526333 -68753221 + AluJo SINE Alu 122 303 -9 2307 80 3 20 chr6 120527176 120527477 -68752077 - AluSg SINE Alu -14 296 1 744 146 0 51 chr6 120527788 120527925 -68751629 + FLAM_C SINE Alu 1 130 -3 207 0 0 0 chr6 120527942 120527965 -68751589 + (TTG)n Simple_repeat Simple_repeat 2 24 0 499 120 0 0 chr6 120527968 120528043 -68751511 - AluSg/x SINE Alu -35 275 201 248 118 0 0 chr6 120528043 120528077 -68751477 - Alu SINE Alu -51 252 219 421 136 0 0 chr6 120528077 120528143 -68751411 - AluSg/x SINE Alu -44 268 203 306 119 0 0 chr6 120528143 120528185 -68751369 - AluSc SINE Alu -49 250 209 2064 92 0 8 chr6 120528185 120528447 -68751107 - AluSq SINE Alu -53 260 1 237 121 0 181 chr6 120528470 120528519 -68751035 - L1ME4a LINE L1 0 6121 6103 1601 149 36 55 chr6 120528519 120528827 -68750727 + AluJo SINE Alu 1 302 -10 237 121 0 181 chr6 120528827 120528893 -68750661 - L1ME4a LINE L1 -18 6103 6027 758 175 0 29 chr6 120528897 120529034 -68750520 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr6 120529039 120529063 -68750491 + AT_rich Low_complexity Low_complexity 1 24 0 1824 149 0 58 chr6 120529198 120529527 -68750027 - AluJb SINE Alu -2 310 1 385 174 0 82 chr6 120530186 120530284 -68749270 + AluJb SINE Alu 211 300 -2 2133 118 7 0 chr6 120530290 120530577 -68748977 + AluSx SINE Alu 1 289 -23 32 26 0 0 chr6 120530577 120530616 -68748938 + AT_rich Low_complexity Low_complexity 1 39 0 288 224 145 0 chr6 120530642 120530718 -68748836 - L1ME LINE L1 -523 5598 5512 406 134 15 0 chr6 120530791 120530858 -68748696 - Alu SINE Alu 0 302 235 22 0 0 0 chr6 120531410 120531432 -68748122 + AT_rich Low_complexity Low_complexity 1 22 0 1806 171 7 3 chr6 120531448 120531757 -68747797 - AluJb SINE Alu -2 310 1 667 181 30 15 chr6 120531789 120531922 -68747632 + AluJ SINE Alu 2 136 -176 2395 87 0 0 chr6 120531945 120532233 -68747321 + AluSc SINE Alu 1 288 -21 2220 108 3 0 chr6 120532261 120532556 -68746998 + AluY SINE Alu 1 296 -15 944 172 0 46 chr6 120532556 120532730 -68746824 + AluJ SINE Alu 134 299 -13 863 215 11 5 chr6 120532738 120532929 -68746625 + L1PA16 LINE L1 5971 6162 -4 2624 68 0 0 chr6 120532929 120533240 -68746314 + AluY SINE Alu 1 311 0 2275 120 3 0 chr6 120533314 120533622 -68745932 + AluSq SINE Alu 1 309 -4 2219 115 0 0 chr6 120534001 120534309 -68745245 + AluSx SINE Alu 1 308 0 557 124 38 124 chr6 120535037 120535092 -68744462 - MER33 DNA MER1_type -2261 363 305 2015 114 0 36 chr6 120535092 120535398 -68744156 + AluSx SINE Alu 1 295 -17 557 124 38 124 chr6 120535398 120535528 -68744026 - MER33 DNA MER1_type -2319 305 194 574 107 24 0 chr6 120535532 120535616 -68743938 + AluSp/q SINE Alu 165 250 -63 1162 191 4 13 chr6 120535616 120535846 -68743708 + AluJb SINE Alu 85 312 0 2039 94 0 88 chr6 120535850 120536179 -68743375 + AluSg SINE Alu 1 300 -10 2139 104 3 7 chr6 120536542 120536830 -68742724 - AluSc SINE Alu -9 300 14 1760 90 8 12 chr6 120536844 120537089 -68742465 - AluSp SINE Alu -15 298 55 512 254 9 0 chr6 120537189 120537299 -68742255 - MER3 DNA MER1_type -98 111 1 2007 158 0 3 chr6 120537314 120537624 -68741930 - AluJb SINE Alu -3 309 1 596 173 16 55 chr6 120537642 120537769 -68741785 - FLAM_C SINE Alu -10 133 12 277 345 62 73 chr6 120537854 120538129 -68741425 - L2 LINE L2 -97 3175 2904 2469 76 3 0 chr6 120538198 120538501 -68741053 - AluSp SINE Alu -9 304 1 232 259 0 0 chr6 120538633 120538691 -68740863 + MIR SINE MIR 199 256 -6 1323 190 142 0 chr6 120539068 120539321 -68740233 - AluJo SINE Alu -13 289 1 385 196 134 0 chr6 120539460 120539572 -68739982 - MER115 DNA AcHobo -30 663 537 2023 116 7 27 chr6 120539572 120539873 -68739681 + AluSx SINE Alu 1 295 -17 1786 166 0 14 chr6 120539948 120540244 -68739310 - AluJo SINE Alu -20 292 1 1924 132 0 0 chr6 120540270 120540536 -68739018 + AluSx SINE Alu 1 266 -46 180 0 0 0 chr6 120540546 120540566 -68738988 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 740 205 56 19 chr6 120540570 120540715 -68738839 - Zaphod DNA AcHobo -184 3847 3690 2453 71 0 3 chr6 120540715 120541011 -68738543 - AluSq SINE Alu -18 295 1 740 205 56 19 chr6 120541011 120541080 -68738474 - Zaphod DNA AcHobo -341 3690 3625 2362 104 0 0 chr6 120541109 120541417 -68738137 + AluSg SINE Alu 2 309 -1 582 200 45 0 chr6 120541459 120541569 -68737985 - AluSg/x SINE Alu 0 309 195 29 60 0 0 chr6 120541582 120541632 -68737922 + AT_rich Low_complexity Low_complexity 1 50 0 2011 107 14 24 chr6 120541738 120542028 -68737526 - AluSx SINE Alu -25 287 1 216 97 0 0 chr6 120542151 120542182 -68737372 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 740 157 17 0 chr6 120542182 120542297 -68737257 - FLAM_C SINE Alu -25 118 2 2256 100 3 0 chr6 120542372 120542661 -68736893 - AluSc SINE Alu -19 290 1 2088 158 109 141 chr6 120542945 120543257 -68736297 + LTR48 LTR ERV1 65 386 -401 2177 95 21 0 chr6 120543257 120543540 -68736014 - AluSg SINE Alu -21 289 1 1222 174 85 53 chr6 120543548 120543712 -68735842 - AluJb SINE Alu -22 290 112 261 57 0 0 chr6 120543712 120543747 -68735807 + (TG)n Simple_repeat Simple_repeat 2 36 0 1222 174 85 53 chr6 120543747 120543863 -68735691 - AluJb SINE Alu -200 112 1 2145 122 3 0 chr6 120543871 120544174 -68735380 - AluSx SINE Alu -6 306 3 2088 158 109 141 chr6 120544174 120544262 -68735292 + LTR48 LTR ERV1 400 489 -298 2412 82 0 13 chr6 120544262 120544565 -68734989 + AluSx SINE Alu 9 307 -5 2088 158 109 141 chr6 120544565 120544890 -68734664 + LTR48 LTR ERV1 489 785 -2 513 320 63 74 chr6 120545991 120546275 -68733279 - L2 LINE L2 -18 3254 2974 268 250 31 31 chr6 120546298 120546394 -68733160 - LTR32 LTR ERVL 0 471 376 1572 114 5 0 chr6 120546394 120546605 -68732949 + AluSp SINE Alu 1 212 -101 1537 130 0 5 chr6 120546705 120546921 -68732633 - AluSx SINE Alu -97 215 1 7635 126 59 46 chr6 120546921 120547473 -68732081 + PABL_A-int LTR ERV1 1130 1673 -3342 2376 96 7 0 chr6 120547473 120547775 -68731779 + AluSx SINE Alu 1 304 -8 7635 126 59 46 chr6 120547775 120547972 -68731582 + PABL_A-int LTR ERV1 1673 1866 -3149 2213 141 0 0 chr6 120547972 120548284 -68731270 + AluSx SINE Alu 1 312 0 7635 126 59 46 chr6 120548284 120548583 -68730971 + PABL_A-int LTR ERV1 1866 2160 -2855 1965 108 63 0 chr6 120548583 120548852 -68730702 + AluSc SINE Alu 3 288 -21 7635 126 59 46 chr6 120548852 120548973 -68730581 + PABL_A-int LTR ERV1 2160 2278 -2737 2441 72 14 0 chr6 120548973 120549266 -68730288 + AluSp SINE Alu 1 297 -16 7635 126 59 46 chr6 120549266 120550027 -68729527 + PABL_A-int LTR ERV1 2278 3028 -1987 2163 112 14 0 chr6 120550027 120550321 -68729233 - AluSp SINE Alu -11 302 5 7635 126 59 46 chr6 120550321 120550577 -68728977 + PABL_A-int LTR ERV1 3028 3894 -1121 2039 109 46 0 chr6 120550577 120550861 -68728693 + AluSp SINE Alu 1 297 -16 2086 114 0 20 chr6 120550870 120551169 -68728385 + AluSx SINE Alu 1 293 -19 419 165 9 139 chr6 120551170 120551285 -68728269 + AluJo/FRAM SINE Alu 134 233 -79 1394 118 25 25 chr6 120551391 120551636 -68727918 + AluSq SINE Alu 69 313 0 1391 182 152 0 chr6 120551646 120551910 -68727644 + AluSx SINE Alu 1 304 -8 260 213 16 27 chr6 120551917 120552003 -68727551 - L1MC/D LINE L1 -370 5751 5668 609 238 83 12 chr6 120552016 120552184 -68727370 - L2 LINE L2 -18 3295 3116 530 185 0 0 chr6 120552247 120552328 -68727226 - FLAM_A SINE Alu -55 87 7 876 229 11 107 chr6 120552329 120552707 -68726847 - L2 LINE L2 -233 3080 2750 2233 97 0 0 chr6 120552707 120553022 -68726532 - AluSg SINE Alu 0 315 1 876 229 11 107 chr6 120553022 120553113 -68726441 - L2 LINE L2 -563 2750 2652 1277 114 6 0 chr6 120553115 120553282 -68726272 + AluSx SINE Alu 2 169 -143 1339 298 165 9 chr6 120553282 120553669 -68725885 - L2 LINE L2 -827 2487 1984 1943 138 3 3 chr6 120553669 120553984 -68725570 + AluSx SINE Alu 1 315 0 1339 298 165 9 chr6 120553984 120554152 -68725402 - L2 LINE L2 -1330 1984 1844 248 145 145 0 chr6 120554152 120554194 -68725360 - MLT2B3 LTR ERVL 0 554 519 308 94 19 0 chr6 120554194 120554247 -68725307 + (TGGA)n Simple_repeat Simple_repeat 2 55 0 248 145 145 0 chr6 120554247 120554273 -68725281 - MLT2B3 LTR ERVL -35 519 476 1374 154 105 4 chr6 120554376 120554487 -68725067 + AluJb SINE Alu 1 99 -213 207 0 0 0 chr6 120554487 120554510 -68725044 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1374 154 105 4 chr6 120554510 120554664 -68724890 + AluJb SINE Alu 99 293 -19 1210 126 11 0 chr6 120554720 120554894 -68724660 + AluSg/x SINE Alu 131 306 -4 1737 52 0 5 chr6 120554901 120555113 -68724441 + AluY SINE Alu 1 211 -100 190 375 80 0 chr6 120555686 120555798 -68723756 - MIR3 SINE MIR -25 183 63 1656 143 32 14 chr6 120556050 120556228 -68723326 - AluSx SINE Alu 0 312 139 2515 41 3 0 chr6 120556228 120556522 -68723032 - AluY SINE Alu -16 295 1 2153 113 21 0 chr6 120556524 120556815 -68722739 - AluSx SINE Alu -11 301 5 1656 143 32 14 chr6 120556815 120556940 -68722614 - AluSx SINE Alu -173 139 1 589 257 28 78 chr6 120556941 120557159 -68722395 + L2 LINE L2 3087 3293 -20 569 193 97 62 chr6 120557163 120557339 -68722215 - L2 LINE L2 -421 2893 2712 2655 171 63 4 chr6 120557397 120557905 -68721649 - MER68 LTR ERV1 -24 538 1 548 194 0 186 chr6 120557905 120558133 -68721421 - L2 LINE L2 -1027 2287 2111 2163 119 0 19 chr6 120558133 120558451 -68721103 + AluSx SINE Alu 1 312 0 548 194 0 186 chr6 120558451 120558480 -68721074 - L2 LINE L2 -1203 2111 2078 1183 114 32 0 chr6 120558482 120558640 -68720914 - AluSq SINE Alu -16 297 135 2309 89 14 0 chr6 120558640 120558932 -68720622 - AluSp SINE Alu -17 296 1 605 193 105 29 chr6 120558932 120559103 -68720451 - L2 LINE L2 -1227 2087 1904 1821 158 4 4 chr6 120559277 120559556 -68719998 + AluSx SINE Alu 9 287 -25 300 259 43 78 chr6 120559563 120559615 -68719939 - L1ME1 LINE L1 -29 6137 6085 2285 125 0 0 chr6 120559615 120559920 -68719634 + AluSx SINE Alu 1 305 -7 300 259 43 78 chr6 120559920 120559983 -68719571 - L1ME1 LINE L1 -81 6085 6026 2319 112 0 0 chr6 120560085 120560381 -68719173 + AluSx SINE Alu 1 296 -16 2373 95 3 0 chr6 120560947 120561251 -68718303 + AluSp SINE Alu 2 306 -7 2226 100 0 3 chr6 120561251 120561541 -68718013 + AluSc SINE Alu 1 289 -20 2105 95 24 7 chr6 120561541 120561836 -68717718 + AluSx SINE Alu 7 306 -6 284 314 29 29 chr6 120561957 120562059 -68717495 - L2 LINE L2 -1 3312 3211 2234 131 0 3 chr6 120562508 120562821 -68716733 + AluSx SINE Alu 1 312 0 365 162 101 81 chr6 120562879 120562905 -68716649 + MER39 LTR ERV1 382 406 -301 2191 122 10 13 chr6 120562905 120563216 -68716338 + AluSx SINE Alu 1 310 -2 365 162 101 81 chr6 120563216 120563337 -68716217 + MER39 LTR ERV1 406 532 -175 1964 160 0 19 chr6 120563349 120563667 -68715887 + AluJo SINE Alu 1 312 0 2394 93 0 0 chr6 120563684 120563984 -68715570 - AluY SINE Alu -11 300 1 732 214 0 0 chr6 120563985 120564111 -68715443 - FLAM_A SINE Alu -7 126 1 273 282 0 0 chr6 120564115 120564193 -68715361 - L1M4 LINE L1 -3106 3040 2963 276 98 0 0 chr6 120564980 120565021 -68714533 + MER116 DNA Mariner 2 42 -38 2607 77 0 0 chr6 120565040 120565352 -68714202 - AluSx SINE Alu 0 312 1 1578 152 7 74 chr6 120565352 120565662 -68713892 - AluJb SINE Alu -18 294 6 1982 141 10 3 chr6 120565676 120565975 -68713579 - AluJo SINE Alu -11 301 1 246 128 0 0 chr6 120566150 120566189 -68713365 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 2315 109 0 3 chr6 120566257 120566560 -68712994 - AluSx SINE Alu -10 302 1 1964 103 37 4 chr6 120566720 120566991 -68712563 + AluSx SINE Alu 5 284 -28 1139 145 12 6 chr6 120567091 120567263 -68712291 - AluJb SINE Alu -138 174 2 237 65 0 0 chr6 120567278 120567309 -68712245 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 1165 50 22 17 chr6 120567309 120567488 -68712066 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2347 94 0 3 chr6 120567488 120567908 -68711646 - AluSg SINE Alu 0 419 1 357 292 97 5 chr6 120568002 120568187 -68711367 + MLT1I LTR MaLR 68 269 -140 443 342 82 35 chr6 120568266 120568595 -68710959 + L2 LINE L2 2504 2851 -463 1506 205 0 4 chr6 120568595 120568863 -68710691 - AluJo SINE Alu -8 304 38 443 342 82 35 chr6 120568863 120568875 -68710679 + L2 LINE L2 2851 2861 -453 2413 77 0 7 chr6 120569087 120569385 -68710169 - AluSg SINE Alu -14 296 1 296 330 54 0 chr6 120569480 120569592 -68709962 - MIR3 SINE MIR -43 165 48 2299 108 3 0 chr6 120569592 120569899 -68709655 - AluSx SINE Alu -4 308 1 257 324 142 20 chr6 120570106 120570140 -68709414 + MIR SINE MIR 77 105 -157 2295 132 0 0 chr6 120570140 120570443 -68709111 - AluSq SINE Alu -10 303 1 257 324 142 20 chr6 120570443 120570556 -68708998 + MIR SINE MIR 105 242 -20 557 170 9 0 chr6 120570689 120570801 -68708753 + GA-rich Low_complexity Low_complexity 4 116 0 2400 87 0 7 chr6 120570820 120571129 -68708425 - AluY SINE Alu -4 307 1 2082 157 0 0 chr6 120571345 120571657 -68707897 + AluSx SINE Alu 1 312 0 1438 181 7 29 chr6 120571781 120572062 -68707492 - AluJb SINE Alu -35 277 3 1870 82 13 0 chr6 120572217 120572449 -68707105 - AluSq SINE Alu -78 235 1 816 162 48 0 chr6 120572454 120572621 -68706933 + L1 LINE L1 4575 4749 -1397 2013 145 0 0 chr6 120572621 120572926 -68706628 + AluSx SINE Alu 1 305 0 7529 199 66 53 chr6 120572939 120573383 -68706171 + L1MC1 LINE L1 1809 2246 -4180 2222 126 7 0 chr6 120573383 120573692 -68705862 + AluSq SINE Alu 1 311 -2 7529 199 66 53 chr6 120573692 120574439 -68705115 + L1MC1 LINE L1 2246 2982 -3444 360 138 100 25 chr6 120574439 120574519 -68705035 + LTR8A LTR ERV1 567 652 -75 2081 116 10 3 chr6 120574529 120574821 -68704733 + AluSx SINE Alu 1 294 -18 7529 199 66 53 chr6 120574821 120575754 -68703800 + L1MC1 LINE L1 2990 3909 -2517 2478 46 0 3 chr6 120575754 120576038 -68703516 + AluY SINE Alu 21 303 -8 7529 199 66 53 chr6 120576038 120576642 -68702912 + L1MC1 LINE L1 3909 5607 -819 757 181 30 8 chr6 120576643 120576776 -68702778 + AluJo SINE Alu 1 136 -176 658 169 0 0 chr6 120576776 120576894 -68702660 + L1MC1 LINE L1 5600 5717 -896 2266 85 7 0 chr6 120576895 120577221 -68702333 + AluSp SINE Alu 1 328 0 951 155 14 78 chr6 120577230 120577373 -68702181 + AluJo SINE Alu 105 231 -81 2078 148 0 10 chr6 120577373 120577677 -68701877 - AluJb SINE Alu -11 301 1 951 155 14 78 chr6 120577677 120577752 -68701802 + AluJo SINE Alu 231 309 -3 837 144 0 30 chr6 120577759 120577891 -68701663 + FLAM_C SINE Alu 2 129 -4 5045 149 58 2 chr6 120577912 120578768 -68700786 + L1MC1 LINE L1 5708 6611 -2 668 136 79 183 chr6 120578769 120578883 -68700671 + L1MB7 LINE L1 5814 5938 -246 2022 118 4 4 chr6 120578883 120579163 -68700391 + AluSx SINE Alu 1 280 -32 668 136 79 183 chr6 120579163 120579327 -68700227 + L1MB7 LINE L1 5938 6063 -121 716 181 5 141 chr6 120579345 120579567 -68699987 + AluSg/x SINE Alu 115 309 0 290 182 0 0 chr6 120579569 120579635 -68699919 + L1MB8 LINE L1 6107 6172 -6 2470 89 0 0 chr6 120579638 120579940 -68699614 + AluSp SINE Alu 1 302 -11 2440 94 3 0 chr6 120580062 120580369 -68699185 + AluSp SINE Alu 1 308 -5 870 119 0 0 chr6 120580581 120580699 -68698855 + FLAM_C SINE Alu 1 118 -15 1045 131 36 68 chr6 120582276 120582427 -68697127 + MER33 DNA MER1_type 1 144 -2441 1588 182 17 17 chr6 120582427 120582724 -68696830 - AluJo SINE Alu -15 297 1 1045 131 36 68 chr6 120582724 120582794 -68696760 + MER33 DNA MER1_type 144 215 -109 2073 107 0 80 chr6 120582795 120583122 -68696432 - AluSc SINE Alu -8 301 1 2301 120 0 0 chr6 120583475 120583774 -68695780 + AluSx SINE Alu 1 299 -13 262 269 135 19 chr6 120585405 120585509 -68694045 - MIR SINE MIR -107 155 40 249 204 0 0 chr6 120586201 120586222 -68693332 + A-rich Low_complexity Low_complexity 1 21 -28 2398 87 3 0 chr6 120586222 120586534 -68693020 + AluSp SINE Alu 1 313 0 249 204 0 0 chr6 120586534 120586561 -68692993 + A-rich Low_complexity Low_complexity 20 49 0 2420 52 23 20 chr6 120586561 120586867 -68692687 + AluY SINE Alu 1 307 -4 1160 167 25 0 chr6 120586989 120587193 -68692361 + MER2 DNA MER2_type 2 210 -135 1776 152 32 26 chr6 120587206 120587516 -68692038 - AluJo SINE Alu 0 312 1 2362 94 0 3 chr6 120587642 120587949 -68691605 + AluSc SINE Alu 1 306 -3 1646 188 10 20 chr6 120589155 120589458 -68690096 - AluJo SINE Alu -12 300 1 2459 93 0 0 chr6 120589487 120589789 -68689765 - AluSx SINE Alu -10 302 1 2069 137 10 0 chr6 120590013 120590312 -68689242 - AluSx SINE Alu -10 302 1 2017 126 3 3 chr6 120591371 120591656 -68687898 - AluSx SINE Alu -27 285 1 270 230 50 20 chr6 120591720 120591820 -68687734 + Alu SINE Alu 3 105 -195 336 203 0 0 chr6 120591844 120591903 -68687651 + L2 LINE L2 3255 3313 0 1120 147 0 0 chr6 120592377 120592534 -68687020 - AluSq SINE Alu -23 290 134 2357 97 0 3 chr6 120592534 120592834 -68686720 - AluSg SINE Alu -11 299 1 2355 91 3 16 chr6 120592871 120593179 -68686375 - AluSg SINE Alu -5 305 2 1714 135 0 4 chr6 120593230 120593474 -68686080 - AluSq SINE Alu -70 243 1 2262 94 7 3 chr6 120594300 120594598 -68684956 - AluSq SINE Alu -14 299 1 197 274 0 0 chr6 120594648 120594699 -68684855 + L2 LINE L2 3262 3312 -1 2352 100 0 3 chr6 120594785 120595086 -68684468 - AluSq SINE Alu -13 300 1 632 253 167 14 chr6 120595230 120595451 -68684103 + MIR SINE MIR 8 262 0 875 175 23 6 chr6 120595933 120596104 -68683450 + MER5A DNA MER1_type 16 189 0 605 282 156 8 chr6 120596106 120596503 -68683051 + LTR16A1 LTR ERVL 2 457 0 1088 156 12 0 chr6 120596569 120596742 -68682812 - AluSg/x SINE Alu -4 306 132 2272 113 3 0 chr6 120596743 120597044 -68682510 - AluSx SINE Alu -6 306 5 380 299 97 19 chr6 120597231 120597385 -68682169 + MIR SINE MIR 35 200 -62 397 314 36 7 chr6 120597392 120597532 -68682022 + MIR SINE MIR 112 255 -7 2236 114 3 0 chr6 120597595 120597894 -68681660 - AluSx SINE Alu -12 300 1 232 117 65 0 chr6 120598342 120598419 -68681135 + (TA)n Simple_repeat Simple_repeat 1 82 0 2151 122 17 0 chr6 120598419 120598707 -68680847 - AluSx SINE Alu -19 293 1 21 71 0 0 chr6 120598707 120598749 -68680805 + AT_rich Low_complexity Low_complexity 1 42 0 1558 183 16 0 chr6 120598806 120599057 -68680497 + AluJb SINE Alu 1 255 -57 209 200 0 0 chr6 120600381 120600431 -68679123 + A-rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr6 120600526 120600549 -68679005 + AT_rich Low_complexity Low_complexity 1 23 0 669 210 136 68 chr6 120605898 120606273 -68673281 + L1ME1 LINE L1 5729 6122 -44 418 277 31 0 chr6 120606189 120606319 -68673235 + L1MA10 LINE L1 6194 6327 -7 * 255 247 10 103 chr6 120606549 120606646 -68672908 - MER5A DNA MER1_type 0 189 102 1838 150 7 17 chr6 120606980 120607273 -68672281 + AluJb SINE Alu 1 290 -22 316 225 0 88 chr6 120607467 120607547 -68672007 - L1MC4 LINE L1 -1338 6704 6632 252 208 56 42 chr6 120607756 120607828 -68671726 + L2 LINE L2 3231 3303 -10 1993 135 44 0 chr6 120607892 120608189 -68671365 + AluJb SINE Alu 1 310 -2 362 311 66 20 chr6 120608268 120608409 -68671145 + MIR SINE MIR 105 255 -7 2425 90 3 0 chr6 120608409 120608709 -68670845 + AluSx SINE Alu 1 301 -11 2049 100 61 0 chr6 120609095 120609374 -68670180 + AluY SINE Alu 1 296 -15 679 205 0 0 chr6 120609386 120609526 -68670028 + AluJb SINE Alu 168 307 0 1071 152 0 91 chr6 120611117 120611315 -68668239 - AluSg/x SINE Alu -21 289 110 690 183 0 0 chr6 120611441 120611545 -68668009 - AluJb SINE Alu -207 105 2 816 127 113 47 chr6 120611553 120611703 -68667851 - 7SLRNA srpRNA srpRNA -9 311 152 275 83 0 0 chr6 120611704 120611740 -68667814 + 7SLRNA srpRNA srpRNA 114 149 -171 205 182 68 0 chr6 120611741 120611785 -68667769 - L2 LINE L2 -80 3192 3146 1050 131 13 0 chr6 120612741 120612894 -68666660 - AluY SINE Alu -21 290 136 199 313 84 8 chr6 120612896 120613027 -68666527 - MIR SINE MIR -3 259 119 3237 148 60 74 chr6 120613095 120613938 -68665616 + LTR1 LTR ERV1 1 785 0 1019 102 0 22 chr6 120614164 120614301 -68665253 - FLAM_C SINE Alu -4 139 6 1402 169 161 0 chr6 120614390 120614701 -68664853 + AluJb SINE Alu 1 353 0 2192 127 0 7 chr6 120614875 120615183 -68664371 + AluSx SINE Alu 1 306 -6 589 202 61 0 chr6 120615238 120615352 -68664202 - AluJo/FRAM SINE Alu -13 299 179 321 94 0 19 chr6 120615352 120615405 -68664149 - AluSc SINE Alu -171 128 77 1203 159 0 75 chr6 120615406 120615498 -68664056 - AluSg SINE Alu -100 210 113 2323 111 3 0 chr6 120615498 120615795 -68663759 - AluSx SINE Alu -14 298 1 1203 159 0 75 chr6 120615795 120615928 -68663626 - AluSg SINE Alu -197 113 2 407 108 203 0 chr6 120615928 120616002 -68663552 + MER3 DNA MER1_type 121 209 0 324 143 0 0 chr6 120615960 120616009 -68663545 - MER3 DNA MER1_type -120 89 41 * 188 398 10 0 chr6 120616077 120616175 -68663379 + MIR3 SINE MIR 64 162 -46 2266 115 0 0 chr6 120616486 120616782 -68662772 + AluSx SINE Alu 1 296 -16 342 241 66 60 chr6 120616932 120617098 -68662456 - L2 LINE L2 -1473 1841 1675 2083 115 28 0 chr6 120617314 120617601 -68661953 + AluSg SINE Alu 1 295 -15 189 226 32 48 chr6 120617842 120617904 -68661650 + L2 LINE L2 3174 3234 -79 2379 98 0 0 chr6 120618419 120618724 -68660830 + AluY SINE Alu 1 305 -6 202 345 0 0 chr6 120619413 120619471 -68660083 + MIR SINE MIR 1 58 -204 211 250 183 0 chr6 120619498 120619558 -68659996 + MIR SINE MIR 166 236 -26 2405 88 3 0 chr6 120619588 120619882 -68659672 + AluSp SINE Alu 1 295 -18 292 264 82 73 chr6 120619897 120620007 -68659547 + MIR3 SINE MIR 60 170 -38 2237 94 17 0 chr6 120620013 120620300 -68659254 - AluSp SINE Alu -11 302 11 309 150 242 75 chr6 120620475 120620529 -68659025 + L1ME4a LINE L1 5977 6021 -100 2369 97 3 0 chr6 120620529 120620829 -68658725 - AluSq SINE Alu -12 301 1 309 150 242 75 chr6 120620829 120620894 -68658660 + L1ME4a LINE L1 6021 6116 -5 2139 101 14 3 chr6 120621142 120621429 -68658125 + AluSp SINE Alu 1 290 -23 2482 49 3 26 chr6 120621442 120621746 -68657808 + AluY SINE Alu 1 297 -14 915 124 23 0 chr6 120621829 120621958 -68657596 - FLAM_C SINE Alu -11 132 1 1362 115 188 9 chr6 120622031 120622249 -68657305 - AluSg1 SINE Alu -52 257 1 682 165 26 0 chr6 120622272 120622387 -68657167 - FLAM_C SINE Alu -15 118 1 21 36 0 0 chr6 120622428 120622456 -68657098 + AT_rich Low_complexity Low_complexity 1 28 0 2372 110 0 0 chr6 120622593 120622894 -68656660 - AluSx SINE Alu -7 305 5 2434 93 3 0 chr6 120623652 120623964 -68655590 + AluSp SINE Alu 1 313 0 190 246 15 62 chr6 120624047 120624112 -68655442 - MIR SINE MIR -51 211 150 2409 88 0 13 chr6 120624182 120624499 -68655055 - AluSq SINE Alu 0 313 1 325 263 0 12 chr6 120625215 120625295 -68654259 - MIR3 SINE MIR -31 177 99 2341 99 0 0 chr6 120625468 120625761 -68653793 + AluSg SINE Alu 1 293 -17 960 201 72 52 chr6 120625795 120625824 -68653730 + MIR SINE MIR 6 33 -229 2522 63 3 0 chr6 120625824 120626123 -68653431 + AluY SINE Alu 1 300 -11 960 201 72 52 chr6 120626123 120626342 -68653212 + MIR SINE MIR 33 259 -3 2296 84 6 10 chr6 120626391 120626702 -68652852 - AluY SINE Alu 0 311 2 2463 87 0 0 chr6 120626935 120627235 -68652319 + AluY SINE Alu 1 300 -11 2450 70 0 10 chr6 120627927 120628226 -68651328 + AluY SINE Alu 1 296 -15 1832 173 105 20 chr6 120628258 120628658 -68650896 - Tigger2a DNA MER2_type 0 434 1 2327 88 17 0 chr6 120628720 120629014 -68650540 + AluSg SINE Alu 1 299 -11 682 101 20 0 chr6 120629014 120629113 -68650441 - L1PB4 LINE L1 -14 6142 6042 1960 133 21 3 chr6 120629785 120630070 -68649484 + AluJb SINE Alu 5 294 -18 2555 57 0 10 chr6 120630074 120630373 -68649181 + AluY SINE Alu 1 296 -15 460 246 134 28 chr6 120630374 120630553 -68649001 + L1ME4a LINE L1 5922 6119 -2 315 0 0 0 chr6 120631806 120631841 -68647713 + (TG)n Simple_repeat Simple_repeat 2 36 0 1091 57 0 0 chr6 120631841 120631965 -68647589 - AluY SINE Alu -187 124 1 1881 184 10 0 chr6 120632074 120632383 -68647171 - AluJb SINE Alu 0 312 1 2328 113 0 3 chr6 120632466 120632776 -68646778 + AluSx SINE Alu 1 309 -3 300 657 0 0 chr6 120632781 120632956 -68646598 + FAM SINE Alu 1 175 0 213 39 0 0 chr6 120633042 120633068 -68646486 + (A)n Simple_repeat Simple_repeat 1 26 0 2630 68 0 0 chr6 120633666 120633974 -68645580 - AluY SINE Alu -3 308 1 2344 109 3 0 chr6 120633979 120634281 -68645273 - AluSp SINE Alu -10 303 1 2342 104 0 13 chr6 120634817 120635133 -68644421 - AluSx SINE Alu 0 312 1 349 185 281 55 chr6 120636102 120636248 -68643306 + MER58C DNA MER1_type 1 179 -36 738 161 0 46 chr6 120636268 120636398 -68643156 + FLAM_C SINE Alu 1 124 -9 742 180 8 0 chr6 120636405 120636527 -68643027 - FLAM_C SINE Alu -19 124 2 368 91 0 0 chr6 120636527 120636582 -68642972 + MER58C DNA MER1_type 160 214 -1 2093 105 42 0 chr6 120636871 120637157 -68642397 + AluSq SINE Alu 3 300 -13 2325 108 0 3 chr6 120637286 120637592 -68641962 - AluSc SINE Alu -4 305 1 2152 125 16 13 chr6 120637773 120638084 -68641470 - AluSx SINE Alu 0 312 1 227 250 19 0 chr6 120638127 120638179 -68641375 + C-rich Low_complexity Low_complexity 4 56 0 388 250 15 53 chr6 120638234 120638366 -68641188 + MIR SINE MIR 20 146 -62 2624 46 0 13 chr6 120638379 120638686 -68640868 - AluY SINE Alu -8 303 1 913 110 8 0 chr6 120638893 120639011 -68640543 + AluSq/x SINE Alu 15 133 -179 2423 81 0 0 chr6 120639014 120639310 -68640244 + AluSq SINE Alu 1 296 -17 2251 88 3 17 chr6 120639313 120639610 -68639944 + AluSc SINE Alu 1 293 -16 23 33 0 0 chr6 120639610 120639640 -68639914 + AT_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr6 120639729 120639766 -68639788 + AT_rich Low_complexity Low_complexity 1 37 0 2569 60 0 19 chr6 120639893 120640209 -68639345 + AluY SINE Alu 1 310 -1 2203 115 7 0 chr6 120640349 120640644 -68638910 + AluSc SINE Alu 1 297 -12 2212 104 0 26 chr6 120640649 120640957 -68638597 + AluSq SINE Alu 1 300 -13 1049 197 79 0 chr6 120640987 120641190 -68638364 - MER20 DNA MER1_type 0 219 1 1140 99 0 0 chr6 120641368 120641509 -68638045 - AluY SINE Alu -170 141 1 2537 60 0 22 chr6 120641649 120641966 -68637588 - AluY SINE Alu -1 310 1 30 27 0 0 chr6 120642093 120642130 -68637424 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr6 120642219 120642249 -68637305 + AT_rich Low_complexity Low_complexity 1 30 0 2246 88 3 17 chr6 120642249 120642546 -68637008 - AluSc SINE Alu -16 293 1 2423 81 0 0 chr6 120642549 120642845 -68636709 - AluSq SINE Alu -17 296 1 913 110 8 0 chr6 120642848 120642966 -68636588 - AluSq/x SINE Alu -179 133 15 2490 55 0 0 chr6 120643173 120643466 -68636088 + AluY SINE Alu 1 293 -18 2192 127 0 7 chr6 120643738 120644046 -68635508 + AluSx SINE Alu 1 306 -6 592 189 63 0 chr6 120644101 120644212 -68635342 - AluJ SINE Alu -13 299 182 880 149 0 8 chr6 120644212 120644346 -68635208 - AluJ SINE Alu -179 133 1 2372 94 3 3 chr6 120644362 120644660 -68634894 - AluSx SINE Alu -14 298 1 298 87 0 0 chr6 120644889 120644935 -68634619 + Alu SINE Alu 255 300 -2 636 269 102 48 chr6 120645145 120645439 -68634115 + MLT1H LTR MaLR 11 320 -229 2016 100 20 30 chr6 120645568 120645867 -68633687 - AluSx SINE Alu -16 296 1 228 179 0 167 chr6 120645867 120645945 -68633609 + MLT1H LTR MaLR 485 549 0 337 294 35 0 chr6 120646117 120646260 -68633294 + L1ME LINE L1 5635 5782 -339 1660 143 3 54 chr6 120646476 120646790 -68632764 + AluJb SINE Alu 1 298 -14 1975 196 14 12 chr6 120646860 120646945 -68632609 + L1MB7 LINE L1 7 90 -6374 784 158 8 0 chr6 120646945 120647072 -68632482 + FLAM_C SINE Alu 1 128 -5 1975 196 14 12 chr6 120647072 120647474 -68632080 + L1MB7 LINE L1 90 6143 -321 2705 98 157 185 chr6 120647482 120648482 -68631072 + LTR12 LTR ERV1 57 714 0 2524 142 38 171 chr6 120648483 120648623 -68630931 + L1MCa LINE L1 377 534 -5892 2296 95 0 0 chr6 120648623 120648929 -68630625 - AluY SINE Alu -5 306 1 2329 68 0 3 chr6 120648932 120649226 -68630328 - AluY SINE Alu -18 293 1 2524 142 38 171 chr6 120649226 120649486 -68630068 + L1MCa LINE L1 536 829 -5597 1934 103 7 0 chr6 120649486 120649758 -68629796 + AluSc SINE Alu 14 287 -22 2524 142 38 171 chr6 120649758 120649882 -68629672 + L1MCa LINE L1 829 968 -5458 2065 120 3 3 chr6 120649882 120650191 -68629363 + AluSc SINE Alu 1 309 0 2524 142 38 171 chr6 120650191 120650206 -68629348 + L1MCa LINE L1 968 983 -5443 1736 125 52 0 chr6 120650206 120650478 -68629076 + AluSq SINE Alu 21 306 -7 2524 142 38 171 chr6 120650478 120650625 -68628929 + L1MCa LINE L1 983 1148 -5278 2035 96 0 0 chr6 120650625 120650896 -68628658 + AluSg SINE Alu 33 303 -7 2524 142 38 171 chr6 120650896 120650933 -68628621 + L1MCa LINE L1 1148 995 -5431 885 167 8 0 chr6 120650933 120651065 -68628489 - FLAM_C SINE Alu 0 133 1 2524 142 38 171 chr6 120651065 120651140 -68628414 + L1MCa LINE L1 994 1077 -5349 896 161 0 46 chr6 120651144 120651318 -68628236 - FRAM SINE Alu -13 163 1 2431 144 33 45 chr6 120651318 120651832 -68627722 + L1MCa LINE L1 1074 1581 -4845 1347 157 6 68 chr6 120651825 120652009 -68627545 + L1 LINE L1 4267 4422 -1724 * 1766 119 65 0 chr6 120652009 120652287 -68627267 + AluSq SINE Alu 1 296 -17 1347 157 6 68 chr6 120652287 120652440 -68627114 + L1 LINE L1 4422 4583 -1563 2123 71 0 14 chr6 120652451 120652731 -68626823 + AluY SINE Alu 16 291 -20 2355 39 0 0 chr6 120652831 120653112 -68626442 - AluY SINE Alu -30 281 1 1932 74 11 19 chr6 120653280 120653549 -68626005 + AluY SINE Alu 1 267 -44 277 233 14 14 chr6 120653549 120653622 -68625932 + GA-rich Low_complexity Low_complexity 3 75 0 348 137 0 0 chr6 120653641 120653692 -68625862 - MER5A DNA MER1_type -18 171 121 2360 96 12 0 chr6 120653712 120654044 -68625510 + HSMAR1 DNA Mariner 3 338 -949 2197 119 0 0 chr6 120654044 120654355 -68625199 + AluSp SINE Alu 1 311 -2 1105 111 49 0 chr6 120654355 120654517 -68625037 + AluSp SINE Alu 134 303 -10 6738 88 13 11 chr6 120654519 120655279 -68624275 + HSMAR1 DNA Mariner 326 1090 -197 2457 109 56 0 chr6 120655279 120655636 -68623918 - MER51B LTR ERV1 0 377 1 6738 88 13 11 chr6 120655636 120655773 -68623781 + HSMAR1 DNA Mariner 1090 1225 -62 1801 127 4 11 chr6 120655773 120656049 -68623505 + AluSx SINE Alu 1 274 -38 189 107 0 0 chr6 120656068 120656096 -68623458 + (TA)n Simple_repeat Simple_repeat 1 28 0 207 218 0 0 chr6 120656148 120656203 -68623351 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 2271 118 33 12 chr6 120656217 120656549 -68623005 - MER1B DNA MER1_type 0 339 1 2028 128 0 0 chr6 120656877 120657175 -68622379 + AluSg SINE Alu 1 298 -12 1183 49 11 27 chr6 120657175 120657302 -68622252 + (GAAA)n Simple_repeat Simple_repeat 1 304 0 1183 49 11 27 chr6 120657302 120657485 -68622069 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1811 163 3 3 chr6 120657535 120657841 -68621713 + AluJb SINE Alu 2 307 -5 2075 124 0 3 chr6 120657892 120658198 -68621356 - AluSx SINE Alu -7 305 1 1114 217 54 0 chr6 120658372 120658612 -68620942 - MIR SINE MIR -5 257 5 2379 59 0 41 chr6 120658719 120659039 -68620515 - AluY SINE Alu -4 307 1 776 196 0 0 chr6 120659086 120659219 -68620335 + FLAM_C SINE Alu 1 133 0 452 107 27 0 chr6 120659223 120659298 -68620256 + GA-rich Low_complexity Low_complexity 2 78 0 326 308 8 54 chr6 120659520 120659650 -68619904 - L2 LINE L2 -12 3260 3137 1659 148 10 46 chr6 120659774 120660077 -68619477 - AluJo SINE Alu -20 292 1 477 192 19 10 chr6 120660167 120660271 -68619283 - MER53 DNA DNA -76 113 9 499 228 27 0 chr6 120660291 120660401 -68619153 - MIR SINE MIR -65 143 69 2069 128 0 0 chr6 120660568 120660866 -68618688 - AluSx SINE Alu -14 298 1 1671 172 0 7 chr6 120660892 120661188 -68618366 + AluJo SINE Alu 1 294 -18 1905 123 7 20 chr6 120661263 120661564 -68617990 - AluSx SINE Alu -15 297 1 374 196 134 0 chr6 120661564 120661676 -68617878 + MER115 DNA AcHobo 537 663 -30 1333 190 142 0 chr6 120661815 120662068 -68617486 + AluJo SINE Alu 1 289 -13 250 279 12 35 chr6 120662445 120662531 -68617023 - MIR SINE MIR -6 256 173 2443 59 7 0 chr6 120662635 120662939 -68616615 + AluSp SINE Alu 1 306 -7 387 314 129 66 chr6 120663013 120663331 -68616223 + L2 LINE L2 2904 3241 -31 603 197 15 51 chr6 120663362 120663499 -68616055 + FLAM_C SINE Alu 1 132 -1 1087 181 0 5 chr6 120663518 120663711 -68615843 + AluJb SINE Alu 1 192 -120 1846 117 25 0 chr6 120663812 120664086 -68615468 + AluSx SINE Alu 18 298 -14 1634 154 37 30 chr6 120664094 120664224 -68615330 + AluJb SINE Alu 1 129 -183 2111 95 0 0 chr6 120664224 120664509 -68615045 + AluSq SINE Alu 6 290 -23 1634 154 37 30 chr6 120664509 120664676 -68614878 + AluJb SINE Alu 129 300 -12 683 195 8 8 chr6 120664680 120664803 -68614751 + FLAM_A SINE Alu 1 123 -10 546 138 122 2 chr6 120665175 120665190 -68614364 - L1MB7 LINE L1 -212 5956 5944 2063 111 3 7 chr6 120665190 120665488 -68614066 - AluSx SINE Alu -15 297 1 546 138 122 2 chr6 120665488 120665602 -68613952 - L1MB7 LINE L1 -224 5944 5814 5030 149 58 2 chr6 120665603 120666459 -68613095 - L1MC1 LINE L1 -2 6331 5428 840 136 0 30 chr6 120666480 120666612 -68612942 - FLAM_C SINE Alu -4 129 2 817 160 14 78 chr6 120666619 120666694 -68612860 - AluJo SINE Alu -3 309 231 1909 151 0 10 chr6 120666694 120666999 -68612555 + AluJb SINE Alu 1 302 -10 817 160 14 78 chr6 120666999 120667142 -68612412 - AluJo SINE Alu -81 231 105 405 0 0 0 chr6 120667151 120667196 -68612358 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 203 248 20 10 chr6 120667784 120667885 -68611669 + (CGGGG)n Simple_repeat Simple_repeat 2 103 0 34 72 0 0 chr6 120668173 120668242 -68611312 + GC_rich Low_complexity Low_complexity 1 69 0 2329 77 0 0 chr6 120671096 120671396 -68608158 - AluSg SINE Alu -10 300 1 1614 172 7 13 chr6 120671955 120672085 -68607469 + AluJo SINE Alu 5 134 -178 2172 120 0 0 chr6 120672085 120672393 -68607161 + AluSx SINE Alu 1 308 -4 1614 172 7 13 chr6 120672393 120672565 -68606989 + AluJo SINE Alu 134 305 -7 2219 90 3 0 chr6 120672608 120672907 -68606647 + AluSp SINE Alu 2 301 -12 448 282 100 77 chr6 120672907 120673015 -68606539 + L1ME4a LINE L1 5680 5784 -337 1490 203 0 13 chr6 120673015 120673316 -68606238 - AluJo SINE Alu -15 297 1 448 282 100 77 chr6 120673316 120673409 -68606145 + L1ME4a LINE L1 5784 5891 -230 2345 65 0 0 chr6 120673409 120673700 -68605854 - AluSc SINE Alu -18 291 1 448 282 100 77 chr6 120673700 120673756 -68605798 + L1ME4a LINE L1 5891 5944 -177 920 135 0 0 chr6 120673785 120673918 -68605636 + FLAM_C SINE Alu 1 133 0 239 302 35 12 chr6 120674374 120674460 -68605094 - MIR3 SINE MIR -34 174 87 282 56 0 0 chr6 120674526 120674562 -68604992 + (A)n Simple_repeat Simple_repeat 1 36 0 560 249 106 96 chr6 120674625 120674760 -68604794 + L2 LINE L2 2965 3097 -175 1359 178 46 122 chr6 120674760 120674936 -68604618 + MLT1B LTR MaLR 4 192 -198 1965 122 0 16 chr6 120674936 120675240 -68604314 + AluSx SINE Alu 7 305 -7 2107 108 0 3 chr6 120675240 120675537 -68604017 + AluSx SINE Alu 1 296 -16 1359 178 46 122 chr6 120675537 120675776 -68603778 + MLT1B LTR MaLR 190 388 -2 560 249 106 96 chr6 120675776 120675941 -68603613 + L2 LINE L2 3097 3268 -4 1458 182 39 73 chr6 120676209 120676441 -68603113 - MLT1A2 LTR MaLR 0 374 159 2413 56 13 0 chr6 120676441 120676743 -68602811 - AluSp SINE Alu -7 306 1 1458 182 39 73 chr6 120676743 120676894 -68602660 - MLT1A2 LTR MaLR -215 159 4 214 184 61 0 chr6 120677026 120677075 -68602479 - L2 LINE L2 0 3313 3262 2084 116 3 3 chr6 120677097 120677407 -68602147 - AluSg SINE Alu 0 310 1 1438 127 0 0 chr6 120677459 120677671 -68601883 + AluJb SINE Alu 86 297 -15 302 349 126 0 chr6 120677820 120678018 -68601536 + MIR SINE MIR 40 262 0 739 266 104 65 chr6 120678770 120679118 -68600436 - Charlie8 DNA MER1_type -59 282 116 2373 51 0 0 chr6 120679118 120679414 -68600140 - AluY SINE Alu -15 296 1 739 266 104 65 chr6 120679414 120679532 -68600022 - Charlie8 DNA MER1_type -225 116 4 1218 98 0 0 chr6 120679854 120680018 -68599536 + AluSp SINE Alu 137 300 -13 687 187 90 19 chr6 120680163 120680318 -68599236 - FRAM SINE Alu -9 167 2 189 0 0 0 chr6 120681585 120681606 -68597948 + (A)n Simple_repeat Simple_repeat 1 21 0 2094 101 0 0 chr6 120681612 120681914 -68597640 + AluSc SINE Alu 1 302 0 266 350 135 33 chr6 120681950 120682313 -68597241 - L2 LINE L2 -62 3210 2811 2124 72 0 11 chr6 120682814 120683092 -68596462 + AluY SINE Alu 2 276 -35 1129 180 10 5 chr6 120683194 120683400 -68596154 - AluJb SINE Alu -91 221 15 487 254 89 58 chr6 120683408 120683573 -68595981 - L1M4c LINE L1 -3888 2496 2321 1721 152 75 96 chr6 120683573 120683955 -68595599 - MSTB1 LTR MaLR -1 431 58 2330 87 0 3 chr6 120683955 120684265 -68595289 - AluSq SINE Alu -4 309 1 1721 152 75 96 chr6 120684265 120684322 -68595232 - MSTB1 LTR MaLR -374 58 1 487 254 89 58 chr6 120684322 120684380 -68595174 - L1M4c LINE L1 -4063 2321 2266 2115 120 0 3 chr6 120684478 120684778 -68594776 - AluSx SINE Alu -13 299 1 183 333 81 11 chr6 120684828 120684915 -68594639 - MER5A DNA MER1_type 0 189 97 2372 75 3 0 chr6 120684986 120685291 -68594263 - AluSp SINE Alu -7 306 1 2453 52 0 10 chr6 120685405 120685712 -68593842 - AluY SINE Alu -7 304 1 2106 123 7 0 chr6 120685915 120686225 -68593329 - AluSx SINE Alu 0 312 1 189 147 29 0 chr6 120686369 120686403 -68593151 + MIR SINE MIR 217 251 -11 1559 117 94 15 chr6 120686433 120686698 -68592856 - AluY SINE Alu -2 309 24 977 210 79 9 chr6 120686861 120687075 -68592479 - MIR SINE MIR -3 259 31 1871 78 35 4 chr6 120687084 120687387 -68592167 + AluSp SINE Alu 22 332 0 23 33 0 0 chr6 120687565 120687595 -68591959 + AT_rich Low_complexity Low_complexity 1 30 0 2102 85 0 0 chr6 120688035 120688306 -68591248 + AluSx SINE Alu 36 306 -6 1062 183 177 37 chr6 120688309 120688631 -68590923 + LTR48B LTR ERV1 339 642 -2 506 320 63 74 chr6 120689732 120690016 -68589538 - L2 LINE L2 -18 3254 2974 952 211 46 159 chr6 120690039 120690135 -68589419 - LTR32 LTR ERVL 0 471 366 2129 106 7 0 chr6 120690135 120690436 -68589118 + AluSp SINE Alu 1 303 -10 952 211 46 159 chr6 120690436 120690596 -68588958 - LTR32 LTR ERVL -105 366 190 2024 113 13 10 chr6 120690596 120690898 -68588656 - AluSx SINE Alu -9 303 1 952 211 46 159 chr6 120690898 120691092 -68588462 - LTR32 LTR ERVL -281 190 -24 725 174 0 9 chr6 120691092 120691232 -68588322 + FLAM_C SINE Alu 2 140 0 1783 171 0 10 chr6 120691232 120691537 -68588017 + AluSx SINE Alu 1 302 -10 952 211 46 159 chr6 120691537 120691580 -68587974 - LTR32 LTR ERVL -395 76 30 2431 47 7 3 chr6 120691610 120691910 -68587644 - AluY SINE Alu -10 301 1 347 348 149 0 chr6 120691914 120692135 -68587419 - L2 LINE L2 -567 2747 2494 1707 245 118 18 chr6 120692151 120692608 -68586946 - MLT1J LTR MaLR -6 505 3 193 329 51 38 chr6 120692611 120692690 -68586864 - MER5B DNA MER1_type -96 82 3 2296 61 0 19 chr6 120692773 120693083 -68586471 + AluY SINE Alu 2 305 -6 950 170 18 0 chr6 120693123 120693294 -68586260 - FRAM SINE Alu -2 174 1 1582 169 13 30 chr6 120693371 120693672 -68585882 + AluJb SINE Alu 1 296 -16 2206 106 3 0 chr6 120693741 120694044 -68585510 + AluSx SINE Alu 1 304 -8 27 0 0 0 chr6 120694373 120694400 -68585154 + AT_rich Low_complexity Low_complexity 1 27 0 863 158 0 22 chr6 120694400 120694539 -68585015 - FLAM_C SINE Alu -7 136 1 2094 116 46 0 chr6 120695088 120695372 -68584182 + AluSx SINE Alu 1 297 -15 1678 188 7 16 chr6 120695411 120695740 -68583814 + AluJb SINE Alu 3 312 0 559 200 24 79 chr6 120695876 120696002 -68583552 + MER33 DNA MER1_type 4 120 -204 940 221 22 11 chr6 120696002 120696183 -68583371 + MLT1E LTR MaLR 1 183 -410 508 188 0 184 chr6 120696416 120696448 -68583106 + L2 LINE L2 2075 2111 -1203 2175 113 0 19 chr6 120696448 120696766 -68582788 - AluSx SINE Alu 0 312 1 508 188 0 184 chr6 120696766 120696994 -68582560 + L2 LINE L2 2111 2287 -1027 2847 169 63 4 chr6 120696994 120697502 -68582052 + MER68 LTR ERV1 1 538 -24 478 199 97 62 chr6 120697560 120697736 -68581818 + L2 LINE L2 2712 2893 -421 513 257 28 78 chr6 120697740 120697958 -68581596 - L2 LINE L2 -20 3293 3087 1745 134 46 29 chr6 120697959 120698084 -68581470 + AluSx SINE Alu 1 122 -190 2095 117 21 0 chr6 120698084 120698375 -68581179 + AluSx SINE Alu 5 301 -11 2556 41 0 0 chr6 120698377 120698672 -68580882 + AluY SINE Alu 1 295 -16 1745 134 46 29 chr6 120698672 120698850 -68580704 + AluSx SINE Alu 122 312 0 225 0 0 0 chr6 120699306 120699331 -68580223 + (T)n Simple_repeat Simple_repeat 1 25 0 1708 133 4 0 chr6 120699815 120700064 -68579490 - AluSx SINE Alu -62 250 1 946 92 0 0 chr6 120700392 120700511 -68579043 + AluSq/x SINE Alu 1 119 -193 303 175 70 84 chr6 120700533 120700598 -68578956 + MER117 DNA MER1_type 21 85 -112 706 172 31 8 chr6 120700598 120700726 -68578828 + FLAM_C SINE Alu 1 131 -2 303 175 70 84 chr6 120700726 120700803 -68578751 + MER117 DNA MER1_type 85 161 -36 2422 94 3 0 chr6 120701194 120701502 -68578052 - AluSx SINE Alu -3 309 1 753 159 48 0 chr6 120701562 120701688 -68577866 - AluJb SINE Alu -179 133 2 899 98 33 13 chr6 120701866 120702019 -68577535 + L1MB4 LINE L1 6025 6180 0 653 132 5 152 chr6 120702106 120702310 -68577244 + L1M4 LINE L1 4524 4697 -1449 661 165 18 0 chr6 120702319 120702428 -68577126 + L1MD2 LINE L1 6169 6279 -80 285 184 53 79 chr6 120702546 120702603 -68576951 - AluSx SINE Alu -4 297 240 1486 91 5 0 chr6 120702603 120702790 -68576764 - AluSx SINE Alu -124 188 1 1822 115 4 4 chr6 120702790 120703042 -68576512 - AluSx SINE Alu -16 296 45 285 184 53 79 chr6 120703042 120703059 -68576495 - AluSx SINE Alu -40 261 245 2067 236 50 20 chr6 120703059 120703492 -68576062 + L1ME1 LINE L1 5589 6044 -122 941 143 0 0 chr6 120703492 120703625 -68575929 - FLAM_C SINE Alu 0 133 1 2067 236 50 20 chr6 120703625 120703745 -68575809 + L1ME1 LINE L1 6044 6159 -7 2564 47 0 7 chr6 120703751 120704049 -68575505 - AluY SINE Alu -15 296 1 2029 130 10 3 chr6 120704625 120704926 -68574628 + AluSx SINE Alu 1 303 -9 1905 136 44 0 chr6 120704933 120705051 -68574503 + AluSx SINE Alu 3 114 -198 261 0 0 0 chr6 120705051 120705080 -68574474 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1905 136 44 0 chr6 120705080 120705233 -68574321 + AluSx SINE Alu 114 286 -26 1057 171 0 37 chr6 120705259 120705446 -68574108 + AluJo SINE Alu 1 180 -132 1104 149 0 11 chr6 120705756 120705930 -68573624 + AluSg SINE Alu 1 172 -138 2367 89 7 0 chr6 120706041 120706345 -68573209 - AluSx SINE Alu -6 306 1 2011 60 19 30 chr6 120706733 120707002 -68572552 + AluY SINE Alu 37 302 -9 329 250 15 53 chr6 120707018 120707150 -68572404 - MIR SINE MIR -62 146 20 233 310 0 0 chr6 120707205 120707263 -68572291 + G-rich Low_complexity Low_complexity 4 61 0 2097 117 16 19 chr6 120707299 120707606 -68571948 + AluSx SINE Alu 1 306 -6 2427 91 0 3 chr6 120707788 120708095 -68571459 + AluSc SINE Alu 1 306 -3 246 290 0 14 chr6 120708216 120708285 -68571269 - L2 LINE L2 -1 3271 3204 1384 73 0 0 chr6 120710352 120710517 -68569037 + AluSg/x SINE Alu 122 286 -24 774 129 0 50 chr6 120710552 120710691 -68568863 + FLAM_C SINE Alu 2 133 0 1138 91 0 26 chr6 120711081 120711235 -68568319 - AluSq SINE Alu -23 290 141 1499 167 22 11 chr6 120711362 120711663 -68567891 + AluSx SINE Alu 5 308 0 519 186 141 149 chr6 120712270 120712467 -68567087 + MIR SINE MIR 5 201 -61 2319 101 3 0 chr6 120712467 120712765 -68566789 - AluSg SINE Alu -11 299 1 519 186 141 149 chr6 120712765 120712815 -68566739 + MIR SINE MIR 201 250 -12 1766 311 85 14 chr6 120713165 120714025 -68565529 - L3 LINE CR1 -11 1566 646 1700 76 0 9 chr6 120714239 120714450 -68565104 - AluSc SINE Alu -100 209 1 2325 92 3 0 chr6 120714603 120714898 -68564656 - AluSg SINE Alu -14 296 1 195 129 0 0 chr6 120714942 120714973 -68564581 + (A)n Simple_repeat Simple_repeat 1 31 0 295 328 40 29 chr6 120714988 120715162 -68564392 - L3 LINE CR1 -1217 360 185 1009 159 0 0 chr6 120715181 120715332 -68564222 - AluSp SINE Alu -26 287 137 1673 172 3 58 chr6 120715916 120716241 -68563313 + AluJo SINE Alu 1 307 -5 1798 163 9 35 chr6 120716280 120716599 -68562955 + AluJb SINE Alu 1 311 -1 230 315 102 24 chr6 120716642 120716769 -68562785 + L2 LINE L2 3125 3261 -11 2159 117 10 0 chr6 120716829 120717120 -68562434 + AluSx SINE Alu 1 294 -18 17813 80 7 1 chr6 120717130 120719448 -68560106 + L1PA5 LINE L1 1 2333 -3813 22092 36 8 5 chr6 120719554 120720823 -68558731 + L1PA5 LINE L1 2696 3959 -2195 2658 46 0 0 chr6 120720823 120721125 -68558429 + AluY SINE Alu 1 302 -9 22092 36 8 5 chr6 120721125 120723318 -68556236 + L1PA5 LINE L1 3959 6152 -2 253 266 25 13 chr6 120723457 120723536 -68556018 + MER5B DNA MER1_type 95 174 -4 2360 105 0 0 chr6 120723584 120723889 -68555665 + AluSx SINE Alu 1 305 -7 2194 115 10 0 chr6 120724582 120724877 -68554677 + AluSx SINE Alu 1 298 -14 2126 107 17 7 chr6 120724971 120725271 -68554283 - AluSx SINE Alu -9 303 1 195 69 0 0 chr6 120725438 120725467 -68554087 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 1993 129 0 0 chr6 120725581 120725853 -68553701 - AluSx SINE Alu -10 302 31 1901 165 10 0 chr6 120726021 120726318 -68553236 - AluJb SINE Alu -12 300 1 2136 114 7 0 chr6 120726328 120726625 -68552929 - AluSx SINE Alu -13 299 1 2075 131 7 0 chr6 120726896 120727194 -68552360 + AluSg SINE Alu 1 300 -10 2272 103 0 13 chr6 120727204 120727505 -68552049 + AluSp SINE Alu 1 297 -16 811 165 0 8 chr6 120727604 120727731 -68551823 - FLAM_C SINE Alu -17 126 1 216 167 42 0 chr6 120728009 120728057 -68551497 + (TA)n Simple_repeat Simple_repeat 1 50 0 577 80 40 0 chr6 120728060 120728135 -68551419 + U6 snRNA snRNA 2 79 -28 270 0 0 0 chr6 120728180 120728210 -68551344 + (CA)n Simple_repeat Simple_repeat 2 31 0 1336 106 5 35 chr6 120728227 120728426 -68551128 - AluSg/x SINE Alu -16 296 104 1051 64 0 0 chr6 120728458 120728583 -68550971 - AluSp SINE Alu -188 125 1 331 191 0 0 chr6 120728596 120728659 -68550895 - AluSc SINE Alu 0 299 237 648 158 0 0 chr6 120728659 120728760 -68550794 - AluSx SINE Alu -210 102 2 1822 178 7 10 chr6 120728788 120729097 -68550457 + AluJo SINE Alu 1 308 -4 2179 137 0 3 chr6 120729101 120729414 -68550140 + AluJb SINE Alu 1 312 0 1506 80 0 61 chr6 120729445 120729657 -68549897 + AluSx SINE Alu 1 199 -113 6194 129 71 70 chr6 120729758 120730417 -68549137 - PABL_A-int LTR ERV1 -1496 3519 2862 2427 72 14 0 chr6 120730417 120730710 -68548844 - AluSp SINE Alu -16 297 1 6194 129 71 70 chr6 120730710 120730831 -68548723 - PABL_A-int LTR ERV1 -2153 2862 2743 1949 108 63 0 chr6 120730831 120731100 -68548454 - AluSc SINE Alu -21 288 3 6194 129 71 70 chr6 120731100 120731402 -68548152 - PABL_A-int LTR ERV1 -2272 2743 2432 2188 139 0 0 chr6 120731402 120731712 -68547842 - AluSx SINE Alu -2 310 1 6194 129 71 70 chr6 120731712 120731909 -68547645 - PABL_A-int LTR ERV1 -2583 2432 2237 2252 100 10 3 chr6 120731909 120732210 -68547344 - AluSc SINE Alu -6 303 1 1373 195 92 7 chr6 120732494 120732766 -68546788 + LTR48 LTR ERV1 65 359 -428 24 53 0 0 chr6 120732766 120732804 -68546750 + AT_rich Low_complexity Low_complexity 1 38 0 2177 95 21 0 chr6 120732806 120733089 -68546465 - AluSg SINE Alu -21 289 1 1222 174 85 53 chr6 120733097 120733261 -68546293 - AluJb SINE Alu -22 290 112 351 44 0 0 chr6 120733261 120733306 -68546248 + (TG)n Simple_repeat Simple_repeat 2 46 0 1222 174 85 53 chr6 120733306 120733422 -68546132 - AluJb SINE Alu -200 112 1 181 356 82 44 chr6 120735366 120735636 -68543918 - L2 LINE L2 -575 2739 2460 265 306 135 0 chr6 120735666 120735777 -68543777 - L2 LINE L2 -10 3262 3137 2111 109 25 0 chr6 120735788 120736073 -68543481 + AluSg SINE Alu 1 292 -18 1537 123 5 0 chr6 120736576 120736788 -68542766 + AluSg/x SINE Alu 88 300 -12 2182 124 3 0 chr6 120736919 120737218 -68542336 - AluSq SINE Alu -12 301 2 343 246 75 15 chr6 120737678 120737812 -68541742 + MIR SINE MIR 110 251 -11 2300 99 3 0 chr6 120737826 120738119 -68541435 - AluSp SINE Alu -19 294 1 356 159 43 0 chr6 120739085 120739154 -68540400 - MIR SINE MIR -63 145 74 2320 93 3 0 chr6 120740251 120740542 -68539012 + AluSq SINE Alu 1 292 -21 2321 92 0 13 chr6 120741601 120741905 -68537649 - AluSx SINE Alu -12 300 1 2206 115 0 0 chr6 120742041 120742337 -68537217 - AluSc SINE Alu -13 296 1 1439 113 0 0 chr6 120742337 120742532 -68537022 - AluSg/x SINE Alu -1 311 117 201 222 0 0 chr6 120742642 120742678 -68536876 + G-rich Low_complexity Low_complexity 1 36 0 217 310 10 10 chr6 120742814 120742914 -68536640 + GA-rich Low_complexity Low_complexity 1 100 0 213 351 0 22 chr6 120742874 120743069 -68536485 + G-rich Low_complexity Low_complexity 1 190 0 * 909 194 10 15 chr6 120943255 120943456 -68336098 + AluSq SINE Alu 102 301 -12 893 224 0 5 chr6 120943458 120943663 -68335891 + L1 LINE L1 4790 4993 -1153 582 126 8 7 chr6 120943663 120943901 -68335653 + AluSx SINE Alu 1 303 -7 2630 141 63 5 chr6 120943903 120944519 -68335035 + L1P5 LINE L1 5038 5685 -466 355 83 0 0 chr6 120944537 120944585 -68334969 + L1P5 LINE L1 5658 5705 -446 481 253 0 0 chr6 120944688 120944775 -68334779 + Tigger2 DNA MER2_type 2632 2718 0 734 208 50 0 chr6 120945197 120945354 -68334200 + Tigger6a DNA MER2_type 2 166 -917 2152 130 3 48 chr6 120945354 120945709 -68333845 + MER1B DNA MER1_type 1 339 0 1199 180 65 50 chr6 120945709 120946042 -68333512 + Tigger6a DNA MER2_type 156 493 -590 281 343 0 46 chr6 120946427 120946535 -68333019 - MIR SINE MIR -114 148 46 836 207 11 37 chr6 120946595 120946783 -68332771 - LTR39 LTR ERV1 0 783 601 1276 143 40 103 chr6 120946890 120947191 -68332363 - LTR39 LTR ERV1 -501 282 1 929 143 30 148 chr6 120947202 120947396 -68332158 + MER84 LTR ERVI 1 78 -429 2401 75 0 0 chr6 120947396 120947689 -68331865 + AluSx SINE Alu 6 298 -14 929 143 30 148 chr6 120947689 120947796 -68331758 + MER84 LTR ERVI 78 196 -311 2414 102 0 3 chr6 120947925 120948248 -68331306 + L1PA6 LINE L1 5833 6154 0 4121 145 30 6 chr6 120948299 120948955 -68330599 + Tigger2 DNA MER2_type 2047 2718 0 191 171 0 0 chr6 120949599 120949634 -68329920 + MIR SINE MIR 120 154 -108 1016 182 10 10 chr6 120950011 120950246 -68329308 + MER61D LTR ERV1 1 223 -211 220 271 0 14 chr6 120950260 120950330 -68329224 + CT-rich Low_complexity Low_complexity 2 70 0 306 0 0 0 chr6 120950333 120950367 -68329187 + (TA)n Simple_repeat Simple_repeat 2 35 0 2361 127 19 3 chr6 120950469 120950832 -68328722 - LTR24C LTR ERV1 -266 369 1 185 398 47 8 chr6 120950839 120950967 -68328587 - L2 LINE L2 -704 2610 2478 465 281 17 28 chr6 120951001 120951179 -68328375 - L2 LINE L2 -933 2381 2206 371 325 154 23 chr6 120951156 120951461 -68328093 - L2 LINE L2 -6 3307 2963 * 741 248 153 7 chr6 120951520 120952053 -68327501 + L1M4 LINE L1 2203 2851 -3295 2588 62 0 3 chr6 120952083 120952389 -68327165 + AluY SINE Alu 1 305 -6 226 150 0 0 chr6 120952446 120952486 -68327068 - U2 snRNA snRNA -144 44 5 1791 176 97 32 chr6 120953990 120954360 -68325194 - MSTD LTR MaLR -2 394 1 2029 105 0 0 chr6 120954761 120955027 -68324527 + AluY SINE Alu 1 266 -45 673 206 63 72 chr6 120955090 120955313 -68324241 - L1ME2 LINE L1 -36 6128 5908 211 267 120 0 chr6 120955517 120955592 -68323962 + MIR SINE MIR 122 205 -57 351 331 47 18 chr6 120956212 120956381 -68323173 + MIR SINE MIR 62 235 -27 265 267 12 58 chr6 120956677 120956763 -68322791 + L2 LINE L2 3142 3223 -49 221 296 65 37 chr6 120956790 120956898 -68322656 - MIR SINE MIR -13 249 139 453 284 40 7 chr6 120956901 120957049 -68322505 + MER5A DNA MER1_type 9 161 -28 2899 101 13 0 chr6 120957827 120958214 -68321340 - MLT2A2 LTR ERVL -61 392 1 232 268 36 0 chr6 120958391 120958447 -68321107 + MER5A DNA MER1_type 105 162 -27 186 315 34 11 chr6 120958395 120958484 -68321070 - MER5A DNA MER1_type -98 91 1 * 5109 55 13 0 chr6 120958609 120959208 -68320346 - L1PA4 LINE L1 -1 6154 5548 465 218 68 20 chr6 120960070 120960217 -68319337 + MIR3 SINE MIR 33 186 -22 244 307 98 60 chr6 120960498 120960807 -68318747 + L2 LINE L2 2717 3038 -234 229 312 82 86 chr6 120961522 120961814 -68317740 + L2 LINE L2 2976 3266 -6 1661 139 65 47 chr6 120963176 120963285 -68316269 + MSTB1 LTR MaLR 88 194 -238 2078 118 7 0 chr6 120963285 120963572 -68315982 + AluSc SINE Alu 3 291 -18 1661 139 65 47 chr6 120963572 120963801 -68315753 + MSTB1 LTR MaLR 194 432 0 1786 184 75 57 chr6 120963801 120963896 -68315658 - MLT1D LTR MaLR -73 432 340 1466 233 111 11 chr6 120963896 120964256 -68315298 + MSTD LTR MaLR 1 396 0 1786 184 75 57 chr6 120964256 120964584 -68314970 - MLT1D LTR MaLR -165 340 1 215 79 26 0 chr6 120965407 120965445 -68314109 + (CA)n Simple_repeat Simple_repeat 1 39 0 3432 218 82 64 chr6 120965961 120966778 -68312776 - L1M4 LINE L1 -918 5228 4343 267 75 0 0 chr6 120966778 120966818 -68312736 + MADE1 DNA Mariner 4 43 -37 3432 218 82 64 chr6 120966818 120967172 -68312382 - L1M4 LINE L1 -1803 4343 3997 1092 182 30 47 chr6 120967417 120967653 -68311901 - LTR52 LTR ERVL -185 236 5 2460 241 56 8 chr6 120967668 120968385 -68311169 - L1M4 LINE L1 -2750 3396 2646 337 359 38 11 chr6 120968388 120968572 -68310982 - L2 LINE L2 -240 3073 2885 509 302 32 26 chr6 120968884 120969073 -68310481 - MIR SINE MIR -71 191 2 333 204 9 62 chr6 120969591 120969704 -68309850 - Charlie7 DNA MER1_type -31 2581 2475 308 268 41 31 chr6 120970218 120970315 -68309239 - L2 LINE L2 0 3272 3175 621 293 150 33 chr6 120970566 120970925 -68308629 - L2 LINE L2 -482 2832 2432 282 143 0 0 chr6 120971461 120971510 -68308044 + (A)n Simple_repeat Simple_repeat 1 49 0 326 329 65 18 chr6 120971510 120971680 -68307874 - MIR3 SINE MIR -15 193 16 941 81 147 0 chr6 120971707 120971843 -68307711 - L1PB2 LINE L1 -1 6150 5995 657 142 92 42 chr6 120971872 120971992 -68307562 - FLAM_C SINE Alu -16 127 2 842 152 191 17 chr6 120972378 120972556 -68306998 - MER3 DNA MER1_type 0 209 1 2219 113 0 3 chr6 120972730 120973031 -68306523 + AluSq SINE Alu 1 300 -13 591 236 13 64 chr6 120973099 120973256 -68306298 - L1ME LINE L1 -533 5637 5489 21010 70 5 2 chr6 120973945 120977119 -68302435 - L1P1 LINE L1 -397 5758 2574 10213 23 4 0 chr6 120977249 120978426 -68301128 - L1P LINE L1 -1111 5035 3854 3413 38 2 5 chr6 120978426 120978808 -68300746 + L1PA4 LINE L1 5758 6151 -4 29 0 0 0 chr6 120979130 120979159 -68300395 + AT_rich Low_complexity Low_complexity 1 29 0 34 24 0 0 chr6 120979179 120979220 -68300334 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr6 120979699 120979723 -68299831 + AT_rich Low_complexity Low_complexity 1 24 0 2627 33 3 0 chr6 120979732 120980031 -68299523 + AluY SINE Alu 1 300 -11 866 170 0 7 chr6 120980422 120980557 -68298997 - AluJb SINE Alu -20 292 159 721 160 17 0 chr6 120980660 120980779 -68298775 + MER5A DNA MER1_type 60 180 -9 887 112 0 0 chr6 120980911 120981027 -68298527 + AluJb SINE Alu 3 118 -194 266 132 0 0 chr6 120982101 120982139 -68297415 - L2 LINE L2 -17 3255 3218 1551 188 31 0 chr6 120982980 120983272 -68296282 + AluJo SINE Alu 1 301 -11 1061 171 11 0 chr6 120983306 120983481 -68296073 + MER5A DNA MER1_type 4 180 -9 2057 113 38 3 chr6 120983598 120983890 -68295664 + AluJb SINE Alu 1 302 -10 291 85 0 0 chr6 120983992 120984039 -68295515 + (CA)n Simple_repeat Simple_repeat 2 48 0 1464 179 34 56 chr6 120984040 120984397 -68295157 - MLT1B LTR MaLR -38 352 4 1719 168 34 0 chr6 120985071 120985363 -68294191 - AluJo SINE Alu -10 302 1 24 32 0 0 chr6 120985659 120985690 -68293864 + AT_rich Low_complexity Low_complexity 1 31 0 615 260 41 15 chr6 120986450 120986646 -68292908 + L1MC5 LINE L1 7740 7940 -21 1907 178 0 0 chr6 120986764 120987067 -68292487 - AluJb SINE Alu -9 303 1 2280 116 3 0 chr6 120987738 120988048 -68291506 + AluSq SINE Alu 1 311 -2 529 231 6 115 chr6 120988832 120989014 -68290540 + MER5B DNA MER1_type 14 175 -3 378 272 29 0 chr6 120989014 120989116 -68290438 - MIR SINE MIR -52 210 106 248 299 56 28 chr6 120989606 120989713 -68289841 + MER5B DNA MER1_type 31 140 -38 189 0 0 0 chr6 120991011 120991032 -68288522 + (T)n Simple_repeat Simple_repeat 1 21 0 1913 86 16 0 chr6 120991967 120992212 -68287342 + AluSg SINE Alu 49 297 -13 232 323 125 68 chr6 120992330 120992822 -68286732 - L2 LINE L2 -50 3222 2719 2089 168 187 2 chr6 120992847 120993243 -68286311 + MER44D DNA MER2_type 1 472 -233 3756 169 52 16 chr6 120993243 120993939 -68285615 - MER21B LTR ERV1 0 863 143 1319 139 63 8 chr6 120994037 120994274 -68285280 + Tigger7 DNA MER2_type 2236 2485 -6 1090 91 7 0 chr6 120994383 120994525 -68285029 - LTR24C LTR ERV1 0 635 493 5280 175 194 23 chr6 120994525 120995690 -68283864 + MER52A LTR ERV1 1 1364 -391 4765 35 0 0 chr6 120995790 120996358 -68283196 - L1P LINE L1 -850 5296 4729 1472 160 137 76 chr6 120997176 120997652 -68281902 - MER69 DNA AcHobo -9 2517 2013 1347 214 256 2 chr6 120997647 120998105 -68281449 - MER69 DNA AcHobo -652 574 1 * 1867 97 69 31 chr6 120998346 120998635 -68280919 + AluSg SINE Alu 4 303 -7 234 0 0 0 chr6 120998949 120998975 -68280579 + (T)n Simple_repeat Simple_repeat 1 26 0 873 208 28 112 chr6 120999209 120999531 -68280023 - MER51C LTR ERV1 0 640 346 1122 199 49 45 chr6 121000705 121000972 -68278582 - MER44D DNA MER2_type -437 268 1 401 298 101 6 chr6 121000972 121001140 -68278414 + MIR SINE MIR 75 258 -4 1741 156 3 65 chr6 121001428 121001749 -68277805 - AluJb SINE Alu -11 301 1 1960 152 3 0 chr6 121003641 121003931 -68275623 + AluJb SINE Alu 1 291 -21 183 42 0 0 chr6 121003980 121004004 -68275550 + (TG)n Simple_repeat Simple_repeat 2 25 0 456 298 45 20 chr6 121005234 121005432 -68274122 + L1ME3A LINE L1 5737 5939 -231 2208 113 7 0 chr6 121005451 121005752 -68273802 - AluSx SINE Alu -9 303 1 207 69 0 0 chr6 121005775 121005804 -68273750 + (CA)n Simple_repeat Simple_repeat 2 30 0 32 19 0 37 chr6 121006838 121006858 -68272696 + AT_rich Low_complexity Low_complexity 1 20 -32 2094 106 7 3 chr6 121006858 121007140 -68272414 - AluSc SINE Alu -26 283 1 32 19 0 37 chr6 121007140 121007173 -68272381 + AT_rich Low_complexity Low_complexity 20 52 0 971 192 157 42 chr6 121007253 121007540 -68272014 - LTR40c LTR ERVL -145 320 1 257 298 24 12 chr6 121008162 121008246 -68271308 - L2 LINE L2 -2 3270 3186 614 291 152 16 chr6 121009094 121009787 -68269767 + L1M4 LINE L1 4583 5393 -753 242 221 65 26 chr6 121009852 121009929 -68269625 + L1ME3A LINE L1 901 980 -5446 * 407 80 0 0 chr6 121009899 121009949 -68269605 + L1PA8A LINE L1 6305 6354 -57 1477 99 0 0 chr6 121010147 121010339 -68269215 - AluSg/x SINE Alu -15 297 106 653 232 22 71 chr6 121010455 121010679 -68268875 + MIR SINE MIR 18 230 -32 2368 89 0 3 chr6 121011380 121011684 -68267870 - AluSp SINE Alu -10 303 1 732 285 103 29 chr6 121012205 121012650 -68266904 + L1ME3A LINE L1 1077 1554 -4862 388 227 57 0 chr6 121012668 121012756 -68266798 + L1ME3A LINE L1 3588 3680 -2746 4676 226 82 11 chr6 121012761 121014099 -68265455 + L1ME3A LINE L1 3728 5160 -1266 1454 254 113 5 chr6 121014100 121014517 -68265037 + LTR16B LTR ERVL 1 462 -2 414 344 68 0 chr6 121014524 121014687 -68264867 + HERV16 LTR ERVL 3 176 -4820 322 270 130 20 chr6 121015000 121015100 -68264454 + MERVL LTR ERVL 4105 4215 -1270 2439 226 104 65 chr6 121015398 121016531 -68263023 + L1ME3A LINE L1 5135 6448 -2 254 327 88 35 chr6 121017415 121017641 -68261913 + L2 LINE L2 1177 1414 -1900 332 336 219 18 chr6 121017773 121018515 -68261039 + L2 LINE L2 2343 3271 -1 29 28 0 0 chr6 121018518 121018554 -68261000 + AT_rich Low_complexity Low_complexity 1 36 0 494 104 8 208 chr6 121020406 121020531 -68259023 + AluY SINE Alu 200 299 -12 180 361 0 14 chr6 121021011 121021083 -68258471 - L2 LINE L2 -1364 1950 1880 416 227 41 0 chr6 121022501 121022598 -68256956 - MER5A DNA MER1_type -88 101 1 21 0 0 0 chr6 121022898 121022919 -68256635 + AT_rich Low_complexity Low_complexity 1 21 0 1990 103 4 0 chr6 121023418 121023681 -68255873 + AluSp SINE Alu 35 298 -15 1090 218 32 82 chr6 121024472 121024876 -68254678 - L1ME3A LINE L1 -234 5936 5553 246 62 0 0 chr6 121025831 121025863 -68253691 + (GGA)n Simple_repeat Simple_repeat 2 33 0 461 194 350 11 chr6 121026208 121026388 -68253166 + MIR SINE MIR 22 262 0 586 258 84 42 chr6 121026861 121027289 -68252265 - L2 LINE L2 -105 3208 2773 2670 101 22 14 chr6 121027371 121027727 -68251827 - THE1B LTR MaLR -1 363 5 2413 134 30 32 chr6 121028076 121028509 -68251045 - LTR32 LTR ERVL -31 440 9 555 198 95 0 chr6 121029101 121029227 -68250327 - MER103 DNA DNA -21 145 8 846 225 46 39 chr6 121031112 121031392 -68248162 - MER74A LTR ERVL 0 558 277 208 357 31 20 chr6 121031496 121031594 -68247960 + MER5A DNA MER1_type 28 126 -63 901 179 36 0 chr6 121031600 121031768 -68247786 + MLT2B1 LTR ERVL 1 174 -346 3337 246 34 33 chr6 121031945 121033002 -68246552 - L1ME3A LINE L1 -1381 4765 3708 1967 130 0 0 chr6 121033172 121033442 -68246112 - AluSx SINE Alu -28 284 15 209 311 50 42 chr6 121033471 121033590 -68245964 - MIR SINE MIR -57 151 32 2354 107 126 3 chr6 121034318 121034700 -68244854 + Tigger7 DNA MER2_type 2053 2481 -6 398 241 13 0 chr6 121034701 121034780 -68244774 - MIR SINE MIR -181 81 2 1232 0 0 0 chr6 121036813 121036941 -68242613 + L1PA5 LINE L1 6016 6143 -11 303 49 0 0 chr6 121036942 121036983 -68242571 + (TA)n Simple_repeat Simple_repeat 2 42 0 268 308 33 22 chr6 121037088 121037179 -68242375 - MER5B DNA MER1_type -86 92 1 5954 105 16 14 chr6 121037570 121039342 -68240212 - L1PA16 LINE L1 -9 6157 4365 892 205 4 25 chr6 121039119 121039367 -68240187 - L1M4 LINE L1 -1563 4583 4348 347 298 157 6 chr6 121039449 121039627 -68239927 + MIR3 SINE MIR 1 205 -3 1017 229 37 16 chr6 121039645 121039889 -68239665 + MIR SINE MIR 10 258 -4 349 266 0 88 chr6 121039913 121040026 -68239528 - MIR3 SINE MIR -23 185 83 354 289 48 60 chr6 121040499 121040665 -68238889 + MIR3 SINE MIR 20 183 -25 994 253 69 3 chr6 121040670 121040918 -68238636 + MIR SINE MIR 5 262 0 21 0 0 0 chr6 121040943 121040964 -68238590 + AT_rich Low_complexity Low_complexity 1 21 0 1015 280 251 12 chr6 121041381 121042199 -68237355 - L2 LINE L2 0 3313 2692 2036 138 7 7 chr6 121042199 121042503 -68237051 - AluSq SINE Alu -9 304 1 1015 280 251 12 chr6 121042503 121042764 -68236790 - L2 LINE L2 -621 2692 1962 891 227 37 44 chr6 121045175 121045470 -68234084 - L1MEc LINE L1 -6072 324 32 453 286 211 54 chr6 121046044 121046869 -68232685 + L2 LINE L2 2267 3212 -60 344 59 20 0 chr6 121048325 121048376 -68231178 + (TG)n Simple_repeat Simple_repeat 2 53 0 275 262 36 12 chr6 121048555 121048639 -68230915 + MIR SINE MIR 91 176 -86 368 248 223 5 chr6 121048639 121048841 -68230713 - LTR16A LTR ERVL -6 444 199 1168 124 0 0 chr6 121049273 121049434 -68230120 + AluSg/x SINE Alu 137 297 -15 267 270 74 58 chr6 121051488 121051799 -68227755 + L1ME LINE L1 894 1209 -4910 349 261 85 56 chr6 121052336 121052712 -68226842 + L1ME LINE L1 2135 2521 -3608 1102 153 0 6 chr6 121053025 121053195 -68226359 - FRAM SINE Alu -12 164 1 670 272 150 30 chr6 121053276 121053703 -68225851 + L1ME LINE L1 3070 3547 -2582 405 314 33 67 chr6 121053934 121054709 -68224845 + L1ME LINE L1 4750 5493 -656 1669 147 45 51 chr6 121055066 121055379 -68224175 + AluJb SINE Alu 1 311 -1 222 298 71 0 chr6 121055955 121056039 -68223515 - L3b LINE CR1 -183 1400 1311 1858 166 0 0 chr6 121057159 121057437 -68222117 + AluJb SINE Alu 1 278 -34 211 298 92 8 chr6 121057567 121057698 -68221856 - MIR3 SINE MIR -52 156 15 664 174 197 46 chr6 121058543 121058761 -68220793 - MIR SINE MIR 0 262 12 637 266 59 0 chr6 121059560 121059729 -68219825 - MIR SINE MIR -82 180 2 217 267 20 116 chr6 121059747 121059893 -68219661 - MIR SINE MIR -130 132 1 912 129 138 146 chr6 121059900 121059981 -68219573 - MLT2B1 LTR ERVL -20 500 420 459 0 0 0 chr6 121059981 121060032 -68219522 + (TA)n Simple_repeat Simple_repeat 2 52 0 912 129 138 146 chr6 121060032 121060299 -68219255 - MLT2B1 LTR ERVL -100 420 155 193 281 0 35 chr6 121061919 121061976 -68217578 + L2 LINE L2 3218 3272 0 946 226 9 5 chr6 121063971 121064183 -68215371 + MER58A DNA MER1_type 11 223 -1 2202 124 0 0 chr6 121065345 121065643 -68213911 + AluSx SINE Alu 1 298 -14 325 261 65 0 chr6 121065992 121066084 -68213470 - MIR3 SINE MIR -23 185 88 265 261 0 0 chr6 121066984 121067049 -68212505 - Charlie8 DNA MER1_type -9 2408 2344 2064 83 101 0 chr6 121068723 121069000 -68210554 + AluY SINE Alu 1 305 -6 190 313 125 0 chr6 121070109 121070189 -68209365 + L2 LINE L2 3147 3236 -36 2228 103 0 32 chr6 121070388 121070698 -68208856 - AluSg SINE Alu -10 300 1 427 338 80 25 chr6 121070948 121071185 -68208369 - MIR SINE MIR -9 253 4 1004 174 10 0 chr6 121072192 121072440 -68207114 + L1MB8 LINE L1 5172 5426 -743 * 1501 109 44 117 chr6 121072438 121072805 -68206749 + L1MB8 LINE L1 5833 6172 -6 2312 96 17 0 chr6 121073458 121073759 -68205795 + AluSg SINE Alu 1 306 -4 9921 145 39 60 chr6 121074434 121075622 -68203932 + Tigger2 DNA MER2_type 1 1129 -1589 1812 158 0 43 chr6 121075622 121075926 -68203628 + AluJb SINE Alu 21 311 -1 9921 145 39 60 chr6 121075926 121076847 -68202707 + Tigger2 DNA MER2_type 1129 2067 -651 13492 141 23 24 chr6 121076856 121079359 -68200195 + L1P LINE L1 11 2510 -3636 406 0 18 18 chr6 121079497 121079552 -68200002 + (TC)n Simple_repeat Simple_repeat 2 56 0 282 29 0 0 chr6 121079551 121079586 -68199968 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 1256 100 16 0 chr6 121079586 121079776 -68199778 + MER61D LTR ERV1 309 501 0 2126 133 0 10 chr6 121079901 121080201 -68199353 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr6 121080469 121080499 -68199055 + AT_rich Low_complexity Low_complexity 1 30 0 1218 89 80 14 chr6 121082992 121083205 -68196349 + Tigger2a DNA MER2_type 3 229 -205 1411 271 119 38 chr6 121083431 121084526 -68195028 - L1ME3A LINE L1 -220 5950 4649 1705 150 23 4 chr6 121084526 121084792 -68194762 - AluSx SINE Alu -41 271 1 1411 271 119 38 chr6 121084792 121085524 -68194030 - L1ME3A LINE L1 -1521 4649 3977 2231 91 0 3 chr6 121085531 121085840 -68193714 - L1PB1 LINE L1 -3 6148 5841 1065 84 0 0 chr6 121085941 121086072 -68193482 - AluSq/x SINE Alu -182 131 1 2969 174 21 8 chr6 121086072 121086733 -68192821 - L1 LINE L1 -1349 4797 4128 267 205 128 51 chr6 121086780 121086897 -68192657 - L1 LINE L1 -2218 3928 3803 435 194 24 58 chr6 121086914 121087048 -68192506 + MLT1D LTR MaLR 1 192 -462 643 234 14 14 chr6 121287490 121287635 -67991919 + MIR SINE MIR 48 192 -70 877 88 16 0 chr6 121287659 121287784 -67991770 - L1PA7 LINE L1 -1 6153 6027 10776 80 16 2 chr6 121287794 121289829 -67989725 - L1PA7 LINE L1 -317 5837 3780 1018 109 23 0 chr6 121289823 121289998 -67989556 + L1P LINE L1 3089 3267 -2879 * 821 53 18 0 chr6 121289997 121290111 -67989443 + L1PA3 LINE L1 1 116 -6030 * 29005 39 3 0 chr6 121290093 121293829 -67985725 + L1PA3 LINE L1 1094 4839 -1307 735 11 0 0 chr6 121293830 121293917 -67985637 + 5S rRNA rRNA 1 87 -34 7619 32 0 0 chr6 121293917 121295248 -67984306 + L1PA3 LINE L1 4824 6155 0 3439 94 0 0 chr6 121295271 121295790 -67983764 + L1P LINE L1 3252 3770 -2376 1494 166 33 40 chr6 121296430 121296732 -67982822 - AluJo SINE Alu -12 300 1 288 0 0 0 chr6 121297465 121297497 -67982057 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 441 0 0 0 chr6 121297981 121298030 -67981524 + (CA)n Simple_repeat Simple_repeat 2 50 0 2196 114 42 33 chr6 121298117 121298478 -67981076 + THE1B LTR MaLR 1 364 0 2250 311 174 39 chr6 121298478 121299136 -67980418 + L2 LINE L2 720 1288 -1984 869 218 0 0 chr6 121299136 121299292 -67980262 + FRAM SINE Alu 1 156 -10 2250 311 174 39 chr6 121299292 121299956 -67979598 + L2 LINE L2 1288 1861 -1411 292 28 0 0 chr6 121299956 121299992 -67979562 + U2 snRNA snRNA 1 36 -152 2250 311 174 39 chr6 121299992 121300852 -67978702 + L2 LINE L2 1861 3270 -2 2805 82 18 0 chr6 121300853 121301254 -67978300 - L1PA7 LINE L1 -1168 4978 4571 7190 47 5 3 chr6 121301254 121302438 -67977116 + L1PA7 LINE L1 4962 6147 -7 22 0 0 0 chr6 121303611 121303633 -67975921 + AT_rich Low_complexity Low_complexity 1 22 0 1601 201 21 9 chr6 121305081 121305419 -67974135 - MER2 DNA MER2_type -2 342 1 1873 129 161 13 chr6 121305960 121306333 -67973221 + MSTA LTR MaLR 1 428 0 343 259 187 14 chr6 121306529 121306668 -67972886 + MIR SINE MIR 73 235 -27 209 304 36 0 chr6 121306819 121306875 -67972679 - L2 LINE L2 -12 3260 3203 619 283 46 8 chr6 121306875 121307112 -67972442 - MARNA DNA Mariner -148 438 193 25 51 0 0 chr6 121307314 121307353 -67972201 + AT_rich Low_complexity Low_complexity 1 39 0 299 346 125 17 chr6 121307906 121308146 -67971408 + L2 LINE L2 2600 2865 -449 438 288 124 52 chr6 121309096 121309329 -67970225 + MIR SINE MIR 12 261 -1 453 268 106 0 chr6 121309650 121309792 -67969762 + MIR SINE MIR 56 212 -50 1479 200 123 53 chr6 121309918 121310367 -67969187 + MLT1D LTR MaLR 26 505 0 242 250 213 29 chr6 121311247 121311383 -67968171 + MIR SINE MIR 78 238 -24 363 183 0 39 chr6 121312585 121312738 -67966816 + (TA)n Simple_repeat Simple_repeat 1 147 0 25 31 0 0 chr6 121312911 121312943 -67966611 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chr6 121313524 121313553 -67966001 + AT_rich Low_complexity Low_complexity 1 29 0 2016 138 29 21 chr6 121315264 121315604 -67963950 + MER2 DNA MER2_type 1 343 -1 405 309 119 43 chr6 121315612 121316098 -67963456 - L1ME LINE L1 -384 5780 5258 402 286 62 70 chr6 121316347 121316737 -67962817 - L1ME LINE L1 -1184 4962 4577 2010 155 0 0 chr6 121316737 121317033 -67962521 + AluJo SINE Alu 1 296 -16 402 286 62 70 chr6 121317033 121317211 -67962343 - L1ME LINE L1 -1569 4577 4399 1076 158 22 22 chr6 121317278 121317462 -67962092 - AluJb SINE Alu 0 312 129 881 315 54 15 chr6 121317469 121318005 -67961549 - L1ME LINE L1 -1854 4292 3727 1318 242 83 74 chr6 121318730 121319556 -67959998 - L1MC4 LINE L1 -6 8036 7203 500 183 0 77 chr6 121319695 121319799 -67959755 + AluJb SINE Alu 199 294 -18 7466 80 11 3 chr6 121320183 121321994 -67957560 + L1PA8 LINE L1 4358 6168 -4 752 150 78 7 chr6 121322083 121322236 -67957318 + L1MB2 LINE L1 6004 6167 -4 261 0 0 0 chr6 121322253 121322282 -67957272 + (CA)n Simple_repeat Simple_repeat 2 30 0 242 292 77 54 chr6 121323266 121323434 -67956120 - MLT1K LTR MaLR -225 363 192 2071 219 39 25 chr6 121323848 121324365 -67955189 + L1M4b LINE L1 10 533 -6326 307 266 101 0 chr6 121324395 121324504 -67955050 + L1M4b LINE L1 2102 2221 -4738 455 263 17 0 chr6 121326293 121326411 -67953143 + MER5C DNA MER1_type 1 120 -204 1743 171 3 33 chr6 121327392 121327697 -67951857 + AluJo SINE Alu 1 296 -16 2023 151 0 0 chr6 121327867 121328165 -67951389 + AluSx SINE Alu 1 298 -14 2285 125 49 42 chr6 121328720 121329145 -67950409 + MSTA LTR MaLR 1 428 0 298 318 47 61 chr6 121329298 121329512 -67950042 + L2 LINE L2 2882 3092 -180 2585 200 69 18 chr6 121329599 121330209 -67949345 - LTR65 LTR ERV1 -21 648 8 12253 176 48 10 chr6 121332651 121335665 -67943889 + L1PA13 LINE L1 1 3137 -3660 2319 89 10 10 chr6 121335665 121335968 -67943586 - AluY SINE Alu -8 303 1 12253 176 48 10 chr6 121335968 121336094 -67943460 + L1PA13 LINE L1 3137 3257 -3540 11278 137 21 6 chr6 121336093 121339093 -67940461 + L1PA13 LINE L1 3784 6813 -1 * 399 145 0 0 chr6 121339614 121339683 -67939871 + (TA)n Simple_repeat Simple_repeat 1 69 0 230 125 54 0 chr6 121339684 121339740 -67939814 + L1MCa LINE L1 2006 2064 -4362 342 194 0 0 chr6 121339744 121339816 -67939738 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 599 67 0 22 chr6 121341231 121341320 -67938234 - L1PA14 LINE L1 0 6161 6075 437 268 7 7 chr6 121342012 121342150 -67937404 - L1MC4 LINE L1 -41 8001 7864 365 213 90 85 chr6 121342171 121342382 -67937172 - L1MC4 LINE L1 -277 7765 7554 2137 114 0 62 chr6 121342387 121342712 -67936842 - AluSx SINE Alu -7 305 1 204 314 23 35 chr6 121342760 121342846 -67936708 - L2 LINE L2 -2 3270 3186 * 649 296 234 12 chr6 121342842 121343406 -67936148 - L2 LINE L2 -775 2539 1851 522 235 163 58 chr6 121343438 121343715 -67935839 + HAL1 LINE L1 1 306 -2201 1213 266 97 22 chr6 121343764 121344272 -67935282 + HAL1 LINE L1 1444 1989 -518 1831 127 29 17 chr6 121346122 121346501 -67933053 - Tigger4(Zombi) DNA MER2_type -1 2730 2 303 275 147 16 chr6 121346505 121346763 -67932791 - L1MC/D LINE L1 -2260 5548 5257 2648 251 72 34 chr6 121346838 121346927 -67932627 + L1M4 LINE L1 3003 3087 -3059 1484 179 137 27 chr6 121346927 121347256 -67932298 + MLT1A1 LTR MaLR 1 365 0 2648 251 72 34 chr6 121347256 121347282 -67932272 + L1M4 LINE L1 3087 3111 -3035 2315 105 0 3 chr6 121347282 121347595 -67931959 + AluSx SINE Alu 1 312 0 2648 251 72 34 chr6 121347595 121348625 -67930929 + L1M4 LINE L1 3111 4193 -1953 1047 224 42 30 chr6 121348658 121348898 -67930656 + L1M4 LINE L1 4564 4811 -1335 2294 97 0 3 chr6 121348898 121349196 -67930358 + AluSg SINE Alu 1 297 -13 1047 224 42 30 chr6 121349196 121349316 -67930238 + L1M4 LINE L1 4811 4928 -1218 1973 225 31 14 chr6 121349347 121349791 -67929763 + MLT1F LTR MaLR 10 461 -81 2054 69 0 0 chr6 121349798 121350043 -67929511 - AluY SINE Alu -4 307 63 5663 133 28 15 chr6 121350051 121350697 -67928857 - L1MA5 LINE L1 -5 6295 5659 8157 116 29 3 chr6 121350697 121351461 -67928093 + HSMAR2 DNA Mariner 3 815 -487 372 22 0 0 chr6 121351461 121351506 -67928048 + (TG)n Simple_repeat Simple_repeat 2 46 0 8157 116 29 3 chr6 121351506 121352007 -67927547 + HSMAR2 DNA Mariner 814 1301 -1 5663 133 28 15 chr6 121352007 121352771 -67926783 - L1MA5 LINE L1 -641 5659 4866 913 48 80 0 chr6 121352781 121352906 -67926648 - MER85 DNA T2_type -4 135 1 201 310 0 84 chr6 121352906 121353044 -67926510 + MIR SINE MIR 92 217 -45 225 0 0 0 chr6 121353162 121353187 -67926367 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 303 301 35 35 chr6 121353885 121354028 -67925526 - L2 LINE L2 -470 2844 2702 1721 153 56 17 chr6 121354102 121354389 -67925165 + AluSg SINE Alu 1 298 -12 273 174 58 0 chr6 121356411 121356480 -67923074 - MER69 DNA AcHobo -75 2451 2379 180 152 0 0 chr6 121356787 121356820 -67922734 - L2 LINE L2 -4 3309 3277 344 289 148 0 chr6 121357154 121357296 -67922258 - Charlie8 DNA MER1_type -339 2078 1916 400 243 39 0 chr6 121357329 121357432 -67922122 - LTR16C LTR ERVL 0 491 385 956 255 70 23 chr6 121357472 121357774 -67921780 - LTR16C LTR ERVL -175 316 1 301 333 70 28 chr6 121357960 121358173 -67921381 - ERVL LTR ERVL -438 5326 5105 225 204 0 0 chr6 121358197 121358241 -67921313 + 5S rRNA rRNA 1 44 -77 489 336 90 8 chr6 121358296 121358856 -67920698 - ERVL LTR ERVL -772 4992 4242 739 325 37 59 chr6 121358856 121359232 -67920322 - ERVL LTR ERVL -1331 4323 3957 2014 235 94 11 chr6 121359232 121359777 -67919777 - MLT1E LTR MaLR -3 590 1 739 325 37 59 chr6 121359777 121359861 -67919693 - ERVL LTR ERVL -1697 3957 3873 1852 321 100 22 chr6 121359896 121361219 -67918335 - ERVL LTR ERVL -1854 3631 2358 30690 90 8 15 chr6 121361345 121362182 -67917372 - L1PA7 LINE L1 0 6469 5627 2867 13 0 0 chr6 121362182 121362493 -67917061 - AluYa5 SINE Alu 0 311 1 30690 90 8 15 chr6 121362493 121364641 -67914913 - L1PA7 LINE L1 -842 5627 3465 2502 57 0 7 chr6 121364641 121364942 -67914612 - AluY SINE Alu -12 299 1 30690 90 8 15 chr6 121364942 121368430 -67911124 - L1PA7 LINE L1 -3004 3465 1 4378 152 70 10 chr6 121368468 121369374 -67910180 - L1MD1 LINE L1 0 6242 5283 21 36 0 0 chr6 121369788 121369816 -67909738 + AT_rich Low_complexity Low_complexity 1 28 0 3140 114 23 2 chr6 121369830 121370303 -67909251 - L1PA15 LINE L1 -2 6163 5681 21 82 0 0 chr6 121370338 121370387 -67909167 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr6 121371480 121371504 -67908050 + AT_rich Low_complexity Low_complexity 1 24 0 822 105 16 0 chr6 121371636 121371760 -67907794 + L1P4 LINE L1 5681 5806 -359 277 266 44 0 chr6 121372914 121373027 -67906527 - L1MC4 LINE L1 -1 8041 7924 35 0 0 40 chr6 121373071 121373103 -67906451 + AT_rich Low_complexity Low_complexity 1 32 -16 862 146 8 0 chr6 121373103 121373233 -67906321 - FLAM_C SINE Alu -2 131 1 35 0 0 40 chr6 121373233 121373250 -67906304 + AT_rich Low_complexity Low_complexity 32 48 0 24 0 0 0 chr6 121373480 121373504 -67906050 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr6 121373544 121373584 -67905970 + AT_rich Low_complexity Low_complexity 1 40 0 490 282 78 24 chr6 121373586 121373853 -67905701 + L1MC/D LINE L1 5309 5604 -517 210 37 0 0 chr6 121373853 121373880 -67905674 + (CA)n Simple_repeat Simple_repeat 2 28 0 490 282 78 24 chr6 121373880 121373939 -67905615 + L1MC/D LINE L1 5604 5658 -463 1715 203 0 10 chr6 121374371 121374682 -67904872 - AluJo SINE Alu -1 311 4 232 274 28 0 chr6 121376065 121376171 -67903383 + (TA)n Simple_repeat Simple_repeat 1 109 0 1224 183 83 53 chr6 121376547 121377055 -67902499 - L1MC5 LINE L1 -44 7917 7395 12084 37 7 0 chr6 121377435 121379787 -67899767 + L1PA5 LINE L1 3890 6258 0 1157 413 42 0 chr6 121382029 121382315 -67897239 - AluSg SINE Alu -2 298 1 2259 104 0 7 chr6 121382345 121382654 -67896900 + AluSc SINE Alu 1 307 -2 4249 166 65 4 chr6 121382784 121383702 -67895852 - Charlie1 DNA MER1_type -1 2760 1787 29 28 0 0 chr6 121384310 121384346 -67895208 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr6 121384364 121384397 -67895157 + AT_rich Low_complexity Low_complexity 1 33 0 196 267 150 0 chr6 121385173 121385233 -67894321 + MIR SINE MIR 117 185 -77 631 195 97 7 chr6 121386168 121386322 -67893232 + MER5A DNA MER1_type 1 168 -21 348 264 153 12 chr6 121386616 121386779 -67892775 + MER5A DNA MER1_type 4 189 0 248 368 30 45 chr6 121386870 121387071 -67892483 + MIR SINE MIR 21 218 -44 240 318 16 48 chr6 121387074 121387200 -67892354 + MIR3 SINE MIR 76 197 -11 274 147 0 53 chr6 121387765 121387840 -67891714 + (GAA)n Simple_repeat Simple_repeat 1 71 0 211 241 0 69 chr6 121388093 121388151 -67891403 - L2 LINE L2 -5 3308 3255 442 100 0 0 chr6 121388173 121388233 -67891321 - MSTC LTR MaLR -2 426 367 417 147 32 0 chr6 121388269 121388364 -67891190 - MER33 DNA MER1_type -70 293 196 * 895 188 76 9 chr6 121388361 121388584 -67890970 - MER33 DNA MER1_type -82 242 5 365 219 59 17 chr6 121388598 121388717 -67890837 + L2 LINE L2 3104 3227 -86 461 271 82 14 chr6 121388850 121389057 -67890497 + L1ME LINE L1 5598 5818 -303 1300 239 35 81 chr6 121389193 121389271 -67890283 + L2 LINE L2 2910 2990 -323 1926 69 0 0 chr6 121389271 121389518 -67890036 + L1PA5 LINE L1 5908 6154 0 1300 239 35 81 chr6 121389518 121389861 -67889693 + L2 LINE L2 2990 3312 -1 254 258 67 22 chr6 121390925 121391014 -67888540 - L2 LINE L2 -4 3268 3176 281 228 176 25 chr6 121391695 121391916 -67887638 + L1M1 LINE L1 5315 5565 -738 252 259 12 59 chr6 121392352 121392437 -67887117 + L1ME LINE L1 5597 5677 -444 2063 114 28 0 chr6 121392437 121392726 -67886828 + AluSx SINE Alu 1 297 -15 287 172 109 0 chr6 121392863 121392927 -67886627 - MER92C LTR ERV1 0 554 484 413 181 188 51 chr6 121392978 121393116 -67886438 - MER92B LTR ERV1 -477 159 3 836 109 0 88 chr6 121393234 121393371 -67886183 + AluJb SINE Alu 1 125 -187 25 31 0 0 chr6 121393426 121393458 -67886096 + AT_rich Low_complexity Low_complexity 1 32 0 354 283 183 12 chr6 121393577 121393817 -67885737 + L1ME LINE L1 5311 5591 -530 2077 119 14 0 chr6 121393842 121394136 -67885418 + AluSq SINE Alu 2 299 -14 235 281 39 34 chr6 121394430 121394608 -67884946 + L1ME LINE L1 5716 5894 -227 8937 62 18 1 chr6 121394628 121395835 -67883719 - L1P LINE L1 -2121 4025 2798 * 40757 61 7 7 chr6 121395831 121401977 -67877577 - L1PA4 LINE L1 -8 6147 11 779 138 6 85 chr6 121402672 121402867 -67876687 + L1M3 LINE L1 5348 5527 -635 868 339 45 62 chr6 121402910 121403751 -67875803 - L2 LINE L2 -15 3257 2430 1408 274 115 33 chr6 121403818 121404452 -67875102 + L2 LINE L2 1880 2565 -749 251 310 10 30 chr6 121404525 121404625 -67874929 - MLT1I LTR MaLR -248 161 64 1096 217 60 12 chr6 121404790 121405039 -67874515 - MLT1C LTR MaLR -6 461 201 525 201 88 15 chr6 121405103 121405361 -67874193 + MLT1C LTR MaLR 1 345 -122 1480 148 69 69 chr6 121405598 121405888 -67873666 + AluJb SINE Alu 1 290 -22 300 127 0 0 chr6 121405889 121405944 -67873610 + (TA)n Simple_repeat Simple_repeat 1 55 0 755 107 18 0 chr6 121406377 121406489 -67873065 + FLAM_C SINE Alu 28 141 -2 2159 167 39 12 chr6 121406491 121406904 -67872650 + L1P LINE L1 2 425 -5721 7102 53 5 0 chr6 121406912 121408407 -67871147 + L1PA6 LINE L1 4647 6146 -8 1025 186 6 6 chr6 121408415 121408598 -67870956 + AluJb SINE Alu 129 311 -1 499 305 12 18 chr6 121409050 121409217 -67870337 + MER5A DNA MER1_type 24 189 0 398 248 119 9 chr6 121409363 121409472 -67870082 + MER5B DNA MER1_type 1 121 -57 936 128 0 0 chr6 121409565 121409690 -67869864 + AluSq/x SINE Alu 1 125 -188 4730 150 58 3 chr6 121409695 121410284 -67869270 + L1MB4 LINE L1 5175 5837 -343 297 0 0 0 chr6 121410284 121410317 -67869237 + (TG)n Simple_repeat Simple_repeat 1 33 0 4730 150 58 3 chr6 121410317 121410682 -67868872 + L1MB4 LINE L1 5837 6180 0 231 180 0 20 chr6 121410699 121410749 -67868805 - MER5B DNA MER1_type -129 49 1 356 325 96 25 chr6 121410922 121411119 -67868435 + MIR SINE MIR 7 217 -45 565 206 0 0 chr6 121411187 121411294 -67868260 + MER45A DNA AcHobo 58 164 -14 908 249 43 112 chr6 121411476 121412038 -67867516 - HAL1 LINE L1 -1984 523 1 1858 195 18 41 chr6 121412618 121413012 -67866542 - MSTD LTR MaLR -8 388 4 417 54 0 0 chr6 121414149 121414205 -67865349 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 1032 213 143 10 chr6 121414293 121414593 -67864961 + L2 LINE L2 434 773 -2541 337 289 94 19 chr6 121414612 121414771 -67864783 - L2 LINE L2 -722 2592 2422 2198 252 96 48 chr6 121414880 121416200 -67863354 - L1ME3A LINE L1 -1 6169 4747 1832 164 0 11 chr6 121416200 121416509 -67863045 - AluJo SINE Alu 0 306 1 2198 252 96 48 chr6 121416509 121416905 -67862649 - L1ME3A LINE L1 -1423 4747 4372 2479 38 0 3 chr6 121417145 121417433 -67862121 + AluY SINE Alu 10 296 -15 807 142 0 0 chr6 121417830 121417943 -67861611 + AluJb SINE Alu 6 118 -194 204 40 0 0 chr6 121417945 121417970 -67861584 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 354 156 91 3 chr6 121417984 121418070 -67861484 + MLT1F1 LTR MaLR 412 500 -5 339 255 174 33 chr6 121418550 121418734 -67860820 + L1MEc LINE L1 165 374 -6022 1806 151 42 0 chr6 121419124 121419408 -67860146 + AluSx SINE Alu 1 296 -16 6788 130 53 6 chr6 121419445 121420583 -67858971 + Tigger3b DNA MER2_type 41 1231 0 1177 256 92 40 chr6 121420589 121421316 -67858238 + L1MEc LINE L1 666 1423 -4792 1961 122 68 22 chr6 121421316 121421637 -67857917 - MER1B DNA MER1_type 0 337 2 1177 256 92 40 chr6 121421637 121421847 -67857707 + L1MEc LINE L1 1423 1621 -4594 2740 235 97 65 chr6 121421949 121423157 -67856397 + HAL1 LINE L1 967 2212 -295 387 0 0 0 chr6 121423163 121423206 -67856348 + (TG)n Simple_repeat Simple_repeat 2 44 0 1950 210 159 16 chr6 121423370 121423866 -67855688 - MLT1F1 LTR MaLR 0 567 1 304 259 120 52 chr6 121423897 121424276 -67855278 + L1ME LINE L1 5279 5675 -446 250 141 81 13 chr6 121424329 121424478 -67855076 + (TA)n Simple_repeat Simple_repeat 1 159 0 201 167 0 50 chr6 121424489 121424549 -67855005 + (TATAA)n Simple_repeat Simple_repeat 5 61 0 188 60 20 60 chr6 121424566 121424616 -67854938 + (TTATA)n Simple_repeat Simple_repeat 1 48 0 284 139 23 54 chr6 121424647 121424776 -67854778 + (TA)n Simple_repeat Simple_repeat 2 126 0 300 124 94 0 chr6 121424805 121425016 -67854538 + (TA)n Simple_repeat Simple_repeat 1 230 0 221 147 0 59 chr6 121425095 121425163 -67854391 + (T)n Simple_repeat Simple_repeat 1 64 0 7822 16 0 0 chr6 121425163 121426059 -67853495 - L1PA2 LINE L1 0 6155 5260 359 152 7 60 chr6 121426177 121426328 -67853226 + (TA)n Simple_repeat Simple_repeat 2 144 0 2780 198 59 46 chr6 121426596 121427313 -67852241 + L1ME1 LINE L1 5320 6045 -121 580 181 0 0 chr6 121427314 121427408 -67852146 - AluJ/FLAM SINE Alu -217 95 2 503 196 28 0 chr6 121427408 121427515 -67852039 + L1ME2 LINE L1 6040 6149 -15 210 158 18 35 chr6 121427566 121427623 -67851931 + (TA)n Simple_repeat Simple_repeat 2 57 0 198 355 172 0 chr6 121428030 121428123 -67851431 + L2 LINE L2 3202 3310 -3 479 314 64 12 chr6 121428399 121428571 -67850983 - MIR3 SINE MIR -25 183 3 438 286 146 11 chr6 121429009 121429194 -67850360 - MIR SINE MIR 0 262 53 185 322 102 0 chr6 121429722 121429781 -67849773 - L2 LINE L2 -1 3271 3207 542 306 80 11 chr6 121429785 121430312 -67849242 - L1M4 LINE L1 -1499 4647 4085 1385 210 4 0 chr6 121430400 121430648 -67848906 + AluJo SINE Alu 10 258 -54 304 307 7 14 chr6 121430676 121430816 -67848738 - L1M4 LINE L1 -2211 3935 3797 228 271 62 31 chr6 121430847 121430943 -67848611 - L1P LINE L1 -1905 4241 4143 771 152 0 8 chr6 121430980 121431112 -67848442 - FLAM_C SINE Alu 0 133 3 27 0 0 0 chr6 121431537 121431564 -67847990 + AT_rich Low_complexity Low_complexity 1 27 0 780 309 104 6 chr6 121431660 121431977 -67847577 - L2 LINE L2 0 3313 2966 451 294 86 32 chr6 121432311 121432532 -67847022 - MIR SINE MIR -21 241 9 251 220 22 22 chr6 121433297 121433436 -67846118 + (TATAA)n Simple_repeat Simple_repeat 1 139 0 231 211 26 26 chr6 121433663 121433739 -67845815 - L1M LINE L1 -916 5387 5312 33 0 0 0 chr6 121434047 121434080 -67845474 + AT_rich Low_complexity Low_complexity 1 33 0 304 270 9 0 chr6 121434095 121434206 -67845348 + (TA)n Simple_repeat Simple_repeat 1 112 0 429 203 39 70 chr6 121435293 121435421 -67844133 - MLT1J LTR MaLR -162 349 226 351 261 170 30 chr6 121435508 121435673 -67843881 - MLT1J LTR MaLR -323 188 1 405 304 42 108 chr6 121437547 121437807 -67841747 - L2 LINE L2 -1 3271 3029 987 223 116 121 chr6 121438203 121438769 -67840785 - L1M4 LINE L1 -823 5323 4759 2066 134 0 10 chr6 121438769 121439074 -67840480 - AluSx SINE Alu -10 302 1 987 223 116 121 chr6 121439074 121439126 -67840428 - L1M4 LINE L1 -1387 4759 4708 988 204 56 53 chr6 121439187 121439262 -67840292 - L1M4 LINE L1 -1445 4701 4628 333 0 0 0 chr6 121439262 121439299 -67840255 + (CA)n Simple_repeat Simple_repeat 1 37 0 988 204 56 53 chr6 121439299 121439410 -67840144 - L1M4 LINE L1 -1518 4628 4519 2026 148 3 42 chr6 121439410 121439767 -67839787 + MER2 DNA MER2_type 1 343 -1 988 204 56 53 chr6 121439767 121439937 -67839617 - L1M4 LINE L1 -1627 4519 4343 21 36 0 0 chr6 121440108 121440136 -67839418 + AT_rich Low_complexity Low_complexity 1 28 0 432 0 0 0 chr6 121440766 121440814 -67838740 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 703 156 49 8 chr6 121441785 121441907 -67837647 - FLAM_A SINE Alu -6 127 1 42234 55 2 1 chr6 121442857 121448693 -67830861 + L1PA5 LINE L1 11 5851 -303 7004 32 1 2 chr6 121448826 121449664 -67829890 + L1PA5 LINE L1 5305 6141 -13 21 0 0 0 chr6 121449664 121449685 -67829869 + AT_rich Low_complexity Low_complexity 1 21 0 1026 99 0 94 chr6 121449856 121450057 -67829497 + MER50 LTR ERV1 499 680 -54 24 24 0 24 chr6 121450057 121450069 -67829485 + AT_rich Low_complexity Low_complexity 1 12 -29 2413 52 0 3 chr6 121450069 121450358 -67829196 - AluY SINE Alu -22 289 2 24 24 0 24 chr6 121450358 121450387 -67829167 + AT_rich Low_complexity Low_complexity 12 41 0 505 245 65 105 chr6 121450397 121450846 -67828708 + L1ME4a LINE L1 5415 5845 -276 * 1414 58 16 0 chr6 121450845 121451034 -67828520 + L1P5 LINE L1 5594 5785 -371 2514 234 17 67 chr6 121451036 121451697 -67827857 + L1PB4 LINE L1 910 1537 -5312 24 0 0 0 chr6 121451710 121451734 -67827820 + AT_rich Low_complexity Low_complexity 1 24 0 13628 95 7 1 chr6 121451734 121454453 -67825101 - L1PA7 LINE L1 0 6154 3420 1581 206 32 19 chr6 121454453 121455005 -67824549 + L1PB4 LINE L1 1892 2435 -4424 2491 63 0 0 chr6 121455005 121455307 -67824247 + AluY SINE Alu 2 303 -8 1581 206 32 19 chr6 121455307 121455389 -67824165 + L1PB4 LINE L1 2435 2514 -4345 3577 103 4 6 chr6 121455389 121455903 -67823651 + MER75 DNA T2_type 2 514 0 1581 206 32 19 chr6 121455903 121459381 -67820173 + L1PB4 LINE L1 2514 6157 -702 2554 34 3 0 chr6 121459381 121459675 -67819879 + AluY SINE Alu 1 295 -16 1581 206 32 19 chr6 121459675 121460388 -67819166 + L1PB4 LINE L1 6157 6859 0 701 189 16 0 chr6 121460646 121460773 -67818781 + FLAM_A SINE Alu 4 132 -1 408 171 26 0 chr6 121461171 121461247 -67818307 + MER5A DNA MER1_type 26 103 -86 754 159 106 0 chr6 121461348 121461480 -67818074 - FRAM SINE Alu -30 146 1 14239 125 60 17 chr6 121464579 121466899 -67812655 - Tigger1 DNA MER2_type 0 2418 1 21 36 0 0 chr6 121467245 121467273 -67812281 + AT_rich Low_complexity Low_complexity 1 28 0 287 240 87 10 chr6 121467710 121467814 -67811740 - L1ME4a LINE L1 -173 5948 5837 2715 218 24 27 chr6 121468674 121469377 -67810177 + L1PB1 LINE L1 2603 3303 -2843 1096 82 0 0 chr6 121469377 121469512 -67810042 + AluSq/x SINE Alu 1 135 -177 2147 113 30 10 chr6 121469512 121469875 -67809679 + AluSx SINE Alu 1 369 0 9274 165 31 14 chr6 121469875 121470616 -67808938 + L1PB1 LINE L1 3249 3976 -2175 2350 97 0 0 chr6 121470616 121470916 -67808638 + AluY SINE Alu 1 300 -11 9274 165 31 14 chr6 121470916 121473032 -67806522 + L1PB1 LINE L1 3976 6151 0 1299 166 61 14 chr6 121473068 121473346 -67806208 + Charlie4 DNA MER1_type 3 293 -1668 1114 143 6 0 chr6 121473349 121473532 -67806022 - AluSg/x SINE Alu 0 305 122 320 219 0 0 chr6 121473627 121473691 -67805863 - MER33 DNA MER1_type -2 361 298 * 813 181 6 0 chr6 121473689 121473845 -67805709 - MER33 DNA MER1_type -255 69 1 238 317 248 0 chr6 121474010 121474111 -67805443 + L2 LINE L2 3137 3262 -10 1495 105 0 21 chr6 121474533 121474771 -67804783 - MER45B DNA AcHobo -44 996 764 298 179 36 0 chr6 121475096 121475152 -67804402 - MER45B DNA AcHobo -298 742 685 435 350 34 6 chr6 121475670 121475847 -67803707 + MER5A DNA MER1_type 8 189 0 250 275 28 18 chr6 121476132 121476241 -67803313 - L1ME4a LINE L1 -46 6075 5966 362 299 95 23 chr6 121476557 121476778 -67802776 - HAL1b LINE L1 -676 672 436 778 148 0 15 chr6 121477164 121477299 -67802255 - L1PB3 LINE L1 0 6154 6022 14040 56 1 0 chr6 121477300 121479851 -67799703 - L1PA5 LINE L1 0 6154 3606 2816 30 0 0 chr6 121479851 121480182 -67799372 - L1PA5 LINE L1 0 6154 5823 6017 64 2 0 chr6 121480182 121480983 -67798571 - L1PA5 LINE L1 -2522 3624 2822 892 116 0 0 chr6 121480981 121481110 -67798444 - L1PB3 LINE L1 -115 6039 5911 * 222 255 0 0 chr6 121481931 121481978 -67797576 + (TA)n Simple_repeat Simple_repeat 1 47 0 1696 169 14 10 chr6 121482260 121482550 -67797004 - AluJo SINE Alu -21 291 1 1667 224 161 15 chr6 121484992 121485582 -67793972 + L1ME LINE L1 559 1234 -5162 1170 193 38 0 chr6 121485582 121485795 -67793759 - MER46A DNA MER2_type -15 221 1 429 203 101 51 chr6 121485662 121485820 -67793734 + MER46A DNA MER2_type 4 169 -67 * 443 255 62 108 chr6 121485836 121486132 -67793422 + L1ME LINE L1 1242 1550 -4665 1929 136 7 0 chr6 121486132 121486432 -67793122 + AluJb SINE Alu 1 302 0 443 255 62 108 chr6 121486432 121486494 -67793060 + L1ME LINE L1 1550 1593 -4622 2304 102 16 0 chr6 121486494 121486799 -67792755 + AluSg SINE Alu 1 310 0 443 255 62 108 chr6 121486799 121486842 -67792712 + L1ME LINE L1 1593 1636 -4579 3764 214 36 40 chr6 121486846 121487546 -67792008 + L1ME LINE L1 3589 4290 -1945 1939 178 133 11 chr6 121487546 121487996 -67791558 + MLT1D LTR MaLR 1 505 0 3764 214 36 40 chr6 121487996 121488279 -67791275 + L1ME LINE L1 4290 4572 -1663 2434 63 3 0 chr6 121488279 121488578 -67790976 + AluY SINE Alu 1 300 -11 3764 214 36 40 chr6 121488578 121488594 -67790960 + L1ME LINE L1 4572 4587 -1648 1703 166 46 3 chr6 121488594 121488878 -67790676 + AluSx SINE Alu 1 296 -16 3764 214 36 40 chr6 121488878 121490104 -67789450 + L1ME LINE L1 4587 5822 -413 * 24646 151 18 18 chr6 121490102 121492914 -67786640 + L1PA8A LINE L1 849 3671 -2775 2267 129 0 0 chr6 121492914 121493225 -67786329 + AluSx SINE Alu 1 311 -1 24646 151 18 18 chr6 121493225 121496001 -67783553 + L1PA8A LINE L1 3671 6446 0 2237 97 3 3 chr6 121496212 121496510 -67783044 - AluSx SINE Alu -14 298 1 26 0 0 0 chr6 121497286 121497312 -67782242 + AT_rich Low_complexity Low_complexity 1 26 0 2649 30 3 0 chr6 121497782 121498086 -67781468 + AluY SINE Alu 1 305 -6 5900 118 12 12 chr6 121498618 121499569 -67779985 - HSMAR2 DNA Mariner -350 952 2 2507 139 11 41 chr6 121499570 121500350 -67779204 - L1M1 LINE L1 -693 5607 4838 345 287 105 48 chr6 121500993 121501202 -67778352 + L2 LINE L2 496 716 -2598 303 309 50 80 chr6 121501229 121501491 -67778063 - L1M4 LINE L1 -2081 4065 3812 1835 149 3 40 chr6 121501908 121502044 -67777510 - AluJo SINE Alu 0 312 172 2200 112 53 31 chr6 121502044 121502400 -67777154 - THE1B LTR MaLR 0 364 1 1835 149 3 40 chr6 121502400 121502586 -67776968 - AluJo SINE Alu -140 172 2 2913 115 14 7 chr6 121502984 121503409 -67776145 - MSTA LTR MaLR 0 428 1 1785 167 0 0 chr6 121503611 121503886 -67775668 - AluJb SINE Alu -15 297 23 2119 121 0 7 chr6 121504560 121504858 -67774696 + AluSx SINE Alu 1 296 -16 489 68 40 0 chr6 121505467 121505541 -67774013 + MADE1 DNA Mariner 2 78 -2 2247 122 3 8 chr6 121505711 121506088 -67773466 - L1MA4A LINE L1 -23 6280 5906 536 298 33 0 chr6 121506382 121506533 -67773021 + MER5B DNA MER1_type 3 158 -20 2297 98 3 0 chr6 121506601 121506896 -67772658 + AluSp SINE Alu 1 296 -17 362 281 112 17 chr6 121506955 121507133 -67772421 + L1ME4a LINE L1 5927 6121 0 38591 63 2 19 chr6 121507582 121513815 -67765739 + L1PA5 LINE L1 24 6151 -3 31 0 0 0 chr6 121513948 121513979 -67765575 + AT_rich Low_complexity Low_complexity 1 31 0 317 43 21 0 chr6 121514094 121514141 -67765413 + (TAAAA)n Simple_repeat Simple_repeat 1 48 0 463 72 0 0 chr6 121514174 121514243 -67765311 - AluSp/q SINE Alu -5 308 240 23 68 0 0 chr6 121514610 121514654 -67764900 + AT_rich Low_complexity Low_complexity 1 44 0 362 204 102 0 chr6 121514808 121514906 -67764648 - L1MA9 LINE L1 -24 6288 6181 1436 195 15 9 chr6 121515634 121515967 -67763587 + L1ME1 LINE L1 5617 5951 -215 530 302 151 11 chr6 121515977 121516242 -67763312 + L3 LINE CR1 1186 1487 -90 891 214 66 0 chr6 121516744 121516940 -67762614 + MER3 DNA MER1_type 1 209 0 1554 98 0 0 chr6 121517350 121517571 -67761983 - AluSc SINE Alu 0 307 87 288 321 130 6 chr6 121517617 121517779 -67761775 + MIR SINE MIR 76 257 -5 3463 137 11 8 chr6 121518446 121518970 -67760584 + MER1A DNA MER1_type 1 526 -1 1019 185 0 0 chr6 121519417 121519579 -67759975 - FRAM SINE Alu -14 162 1 279 327 59 0 chr6 121519982 121520083 -67759471 - L2 LINE L2 0 3313 3207 206 189 132 0 chr6 121520323 121520376 -67759178 + L2 LINE L2 3230 3289 -24 272 289 40 0 chr6 121520395 121520471 -67759083 + MIR SINE MIR 80 158 -104 21 0 0 0 chr6 121520483 121520504 -67759050 + AT_rich Low_complexity Low_complexity 1 21 0 325 161 34 42 chr6 121521962 121522080 -67757474 - L1MDa LINE L1 -4040 2500 2384 5531 121 16 0 chr6 121522113 121523170 -67756384 - L1PA15 LINE L1 0 6165 5078 1449 148 61 0 chr6 121523171 121523449 -67756105 + L1PA15 LINE L1 4758 5052 -1094 433 261 52 75 chr6 121523447 121523792 -67755762 - L1MDa LINE L1 -4285 2436 2100 * 695 301 20 7 chr6 121523867 121524169 -67755385 - L1MDa LINE L1 -4918 1624 1319 * 1600 258 82 26 chr6 121524167 121524910 -67754644 - L1MDa LINE L1 -5157 1373 589 283 214 125 0 chr6 121525227 121525339 -67754215 + L1M4 LINE L1 4112 4237 -1909 1405 286 70 19 chr6 121525614 121526460 -67753094 + HAL1 LINE L1 798 1686 -821 5362 172 25 21 chr6 121527312 121528630 -67750924 + L1PA16 LINE L1 4138 5465 -701 1466 166 94 22 chr6 121528630 121528907 -67750647 - AluJb SINE Alu -15 297 1 5362 172 25 21 chr6 121528907 121529603 -67749951 + L1PA16 LINE L1 5465 6157 -9 31 82 0 0 chr6 121529865 121529938 -67749616 + AT_rich Low_complexity Low_complexity 1 73 0 185 231 132 107 chr6 121530465 121530586 -67748968 - L2 LINE L2 -843 2471 2348 620 218 53 0 chr6 121530773 121530906 -67748648 - MIR SINE MIR 0 262 123 578 249 16 0 chr6 121531123 121531316 -67748238 + L1PBa LINE L1 3 198 -6665 * 1418 120 52 26 chr6 121531312 121531620 -67747934 + L1PBa LINE L1 1411 1726 -5137 1426 179 59 64 chr6 121533232 121533623 -67745931 - MLT1B LTR MaLR -1 389 1 2636 151 106 20 chr6 121534246 121534795 -67744759 - LTR26E LTR ERV1 -20 602 7 266 200 40 13 chr6 121534813 121534888 -67744666 + L1M4 LINE L1 3403 3479 -2667 25 51 0 0 chr6 121535213 121535252 -67744302 + AT_rich Low_complexity Low_complexity 1 39 0 1857 167 0 3 chr6 121535260 121535542 -67744012 + AluJo SINE Alu 6 286 -26 4099 79 16 0 chr6 121535892 121536437 -67743117 - MER41A LTR ERV1 0 554 1 190 307 13 40 chr6 121536883 121536958 -67742596 + MIR SINE MIR 40 112 -96 5413 122 27 111 chr6 121537604 121538901 -67740653 - MER52C LTR ERV1 0 1278 1 669 137 0 0 chr6 121538901 121539003 -67740551 + L1PA16 LINE L1 6043 6144 -22 3114 85 51 2 chr6 121540284 121540695 -67738859 - MER57B LTR ERV1 -3 431 1 288 323 31 0 chr6 121541106 121541202 -67738352 - MIR SINE MIR -13 249 151 2067 194 22 0 chr6 121542263 121542619 -67736935 + MLT1A1 LTR MaLR 1 364 -1 718 334 188 65 chr6 121543478 121543561 -67735993 - LTR16A LTR ERVL 0 450 379 941 112 19 136 chr6 121543561 121543601 -67735953 + MER53 DNA DNA 1 44 -145 2039 120 10 3 chr6 121543601 121543893 -67735661 - AluSx SINE Alu -18 294 1 941 112 19 136 chr6 121543893 121544038 -67735516 + MER53 DNA DNA 44 160 -29 1730 171 0 32 chr6 121544038 121544347 -67735207 - AluJo SINE Alu -12 300 2 941 112 19 136 chr6 121544347 121544374 -67735180 + MER53 DNA DNA 160 189 0 718 334 188 65 chr6 121544374 121544709 -67734845 - LTR16A LTR ERVL -71 379 31 313 261 31 15 chr6 121545170 121545300 -67734254 + (TATAA)n Simple_repeat Simple_repeat 2 133 0 1371 214 151 24 chr6 121545369 121545429 -67734125 - MLT1E LTR MaLR 0 593 542 303 28 0 0 chr6 121545429 121545465 -67734089 + (CA)n Simple_repeat Simple_repeat 2 37 0 1371 214 151 24 chr6 121545465 121545736 -67733818 - MLT1E LTR MaLR -51 542 220 1390 210 22 14 chr6 121545779 121546055 -67733499 - MLT1C LTR MaLR -3 464 187 448 167 71 0 chr6 121546105 121546189 -67733365 - MLT1C LTR MaLR -375 92 3 * 704 206 31 12 chr6 121546189 121546344 -67733210 - MLT1E LTR MaLR -428 165 8 885 231 59 36 chr6 121547176 121547398 -67732156 + MER46C DNA MER2_type 20 235 -103 180 0 0 0 chr6 121547398 121547418 -67732136 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1735 147 41 0 chr6 121547418 121547684 -67731870 - AluJb SINE Alu -35 277 1 885 231 59 36 chr6 121547684 121547763 -67731791 + MER46C DNA MER2_type 234 329 -9 351 0 0 0 chr6 121548346 121548385 -67731169 + (TG)n Simple_repeat Simple_repeat 2 40 0 530 278 21 57 chr6 121548393 121548519 -67731035 + L1MC4a LINE L1 5707 5836 -285 1990 116 20 24 chr6 121548519 121548813 -67730741 + AluSx SINE Alu 1 293 -19 530 278 21 57 chr6 121548813 121548996 -67730558 + L1MC4a LINE L1 5836 6014 -107 21 0 0 0 chr6 121549095 121549116 -67730438 + AT_rich Low_complexity Low_complexity 1 21 0 423 275 35 29 chr6 121550012 121550183 -67729371 - MIR3 SINE MIR -9 199 21 228 326 139 35 chr6 121550962 121551034 -67728520 - L2 LINE L2 -3 3269 3206 207 0 0 0 chr6 121551034 121551057 -67728497 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 333 0 0 0 chr6 121551056 121551093 -67728461 + (TG)n Simple_repeat Simple_repeat 1 37 0 228 326 139 35 chr6 121551057 121551468 -67728086 - L2 LINE L2 -66 3206 2777 313 320 128 32 chr6 121551695 121551976 -67727578 - L2 LINE L2 -1151 2163 1856 261 270 205 65 chr6 121552335 121552872 -67726682 - L2 LINE L2 -1525 1789 1178 24 67 0 0 chr6 121553622 121553667 -67725887 + AT_rich Low_complexity Low_complexity 1 45 0 227 313 108 0 chr6 121555815 121555898 -67723656 + MIR3 SINE MIR 77 168 -40 201 147 0 0 chr6 121557031 121557065 -67722489 + (TG)n Simple_repeat Simple_repeat 2 35 0 210 71 0 0 chr6 121557728 121557756 -67721798 + (T)n Simple_repeat Simple_repeat 1 28 0 799 134 118 0 chr6 121557858 121557977 -67721577 + AluJb SINE Alu 2 134 -178 595 337 59 25 chr6 121558009 121558408 -67721146 - L1ME LINE L1 -449 5672 5255 1606 111 23 0 chr6 121558476 121558692 -67720862 - AluSg/x SINE Alu -14 296 76 31 20 0 20 chr6 121558768 121558787 -67720767 + AT_rich Low_complexity Low_complexity 1 19 -29 2580 64 0 0 chr6 121558787 121559098 -67720456 + AluY SINE Alu 1 311 0 31 20 0 20 chr6 121559098 121559127 -67720427 + AT_rich Low_complexity Low_complexity 19 48 0 2464 72 0 3 chr6 121559351 121559656 -67719898 + AluSg SINE Alu 1 304 -6 249 83 0 0 chr6 121559723 121559759 -67719795 + (T)n Simple_repeat Simple_repeat 1 36 0 390 247 58 81 chr6 121560386 121560560 -67718994 - LTR33 LTR ERVL -344 177 8 971 299 169 16 chr6 121560570 121561186 -67718368 + L2 LINE L2 2160 2869 -445 2105 103 46 13 chr6 121561187 121561489 -67718065 - AluSx SINE Alu 0 312 1 192 77 0 0 chr6 121561775 121561801 -67717753 + (T)n Simple_repeat Simple_repeat 1 26 0 311 319 0 0 chr6 121561965 121562056 -67717498 - HAL1 LINE L1 -948 1559 1469 3007 121 38 2 chr6 121562057 121562329 -67717225 - Tigger3(Golem) DNA MER2_type 0 3028 2732 1558 208 0 23 chr6 121562329 121562637 -67716917 + AluJb SINE Alu 11 311 -1 3007 121 38 2 chr6 121562637 121562812 -67716742 - Tigger3(Golem) DNA MER2_type -296 2732 2565 289 132 57 19 chr6 121562821 121562874 -67716680 + Alu SINE Alu 1 55 -247 280 156 0 0 chr6 121562884 121562929 -67716625 - MER53 DNA DNA -144 45 1 1106 235 201 25 chr6 121562942 121563334 -67716220 + L2 LINE L2 2853 3313 0 290 275 126 61 chr6 121563940 121564202 -67715352 - L2 LINE L2 -452 2862 2584 409 252 49 28 chr6 121564239 121564382 -67715172 - MIR SINE MIR -36 226 81 237 132 0 0 chr6 121564509 121564547 -67715007 + (ATG)n Simple_repeat Simple_repeat 3 40 0 332 325 49 0 chr6 121566034 121566157 -67713397 - MIR SINE MIR 0 262 134 481 216 90 0 chr6 121566214 121566325 -67713229 - MIR SINE MIR -123 139 19 1395 121 24 10 chr6 121566510 121566716 -67712838 + MER3 DNA MER1_type 1 209 0 180 296 66 79 chr6 121566735 121566884 -67712670 + L2 LINE L2 3076 3222 -50 557 224 136 0 chr6 121566884 121567031 -67712523 - MER5B DNA MER1_type -2 176 10 2583 62 0 3 chr6 121567109 121567417 -67712137 - AluSg SINE Alu -3 307 1 819 207 67 0 chr6 121567520 121567670 -67711884 + Tigger5 DNA MER2_type 1 160 -2163 384 193 60 0 chr6 121567729 121567812 -67711742 + Tigger5 DNA MER2_type 2236 2323 0 752 252 244 25 chr6 121567836 121568348 -67711206 - HAL1 LINE L1 -1114 1393 770 1082 95 0 0 chr6 121568368 121568505 -67711049 - AluSp SINE Alu -48 265 129 3041 82 25 2 chr6 121568537 121569114 -67710440 - PABL_A LTR ERV1 0 660 25 1482 241 164 32 chr6 121569175 121569601 -67709953 - HAL1 LINE L1 -1805 702 173 1827 147 0 48 chr6 121569601 121569915 -67709639 + AluJo SINE Alu 1 299 -13 1482 241 164 32 chr6 121569915 121570086 -67709468 - HAL1 LINE L1 -2334 173 26 1719 176 10 23 chr6 121571988 121572294 -67707260 - AluJo SINE Alu -9 303 2 2420 74 0 10 chr6 121572302 121572601 -67706953 - AluSc SINE Alu -13 296 1 1837 115 23 33 chr6 121572947 121573251 -67706303 - AluSx SINE Alu -11 301 1 897 250 60 71 chr6 121573317 121573753 -67705801 - L2 LINE L2 -9 3304 2874 431 250 62 8 chr6 121573780 121573908 -67705646 - MER5B DNA MER1_type -5 173 39 902 253 240 9 chr6 121573934 121574400 -67705154 - L2 LINE L2 -505 2809 2236 338 284 42 29 chr6 121575880 121576126 -67703428 + L1ME LINE L1 5490 5797 -324 242 236 86 36 chr6 121576215 121576355 -67703199 + HAL1b LINE L1 1202 1348 0 186 43 0 0 chr6 121578104 121578127 -67701427 + (T)n Simple_repeat Simple_repeat 1 23 0 334 288 205 31 chr6 121578302 121578590 -67700964 - L2 LINE L2 -5 3308 2971 745 251 143 11 chr6 121578617 121578904 -67700650 - L2 LINE L2 -469 2845 2521 227 27 0 54 chr6 121579275 121579312 -67700242 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1469 134 123 25 chr6 121579535 121579811 -67699743 - AluSx SINE Alu -9 303 1 180 255 255 0 chr6 121580279 121580377 -67699177 - MIR SINE MIR -55 153 31 1029 182 0 0 chr6 121582234 121582399 -67697155 - AluJo SINE Alu -18 294 130 1582 148 85 19 chr6 121583142 121583506 -67696048 - Charlie5 DNA MER1_type 0 2615 2228 533 190 60 0 chr6 121583493 121583609 -67695945 - Charlie5 DNA MER1_type -2485 127 5 * 2318 80 3 0 chr6 121583768 121584056 -67695498 + AluSg SINE Alu 2 290 -20 1346 160 259 13 chr6 121584701 121585014 -67694540 - MLT1B LTR MaLR 0 390 1 460 266 65 7 chr6 121585076 121585215 -67694339 - MIR SINE MIR -70 192 46 27 62 0 0 chr6 121585282 121585330 -67694224 + AT_rich Low_complexity Low_complexity 1 48 0 836 120 0 32 chr6 121585459 121585584 -67693970 - AluJo SINE Alu -181 131 11 3165 52 10 16 chr6 121585706 121586089 -67693465 + L1PA6 LINE L1 5769 6149 -5 252 0 0 0 chr6 121586500 121586528 -67693026 + (TG)n Simple_repeat Simple_repeat 2 29 0 1515 167 116 14 chr6 121586603 121586879 -67692675 - AluJo SINE Alu -8 304 1 266 280 116 77 chr6 121587533 121588110 -67691444 + L2 LINE L2 2439 3036 -236 2299 91 7 3 chr6 121588441 121588738 -67690816 - AluSp SINE Alu -15 298 1 292 365 61 17 chr6 121588991 121589172 -67690382 - MIR3 SINE MIR -4 204 16 303 167 188 31 chr6 121590161 121590257 -67689297 + MIR SINE MIR 34 144 -118 200 350 78 10 chr6 121590329 121590432 -67689122 + MIR3 SINE MIR 73 182 -26 23 0 0 0 chr6 121591135 121591158 -67688396 + GC_rich Low_complexity Low_complexity 1 23 0 219 88 0 0 chr6 121591243 121591277 -67688277 + (CCCCCG)n Simple_repeat Simple_repeat 6 39 0 222 261 46 0 chr6 121593541 121593606 -67685948 + MIR3 SINE MIR 121 188 -20 2279 101 0 10 chr6 121593875 121594172 -67685382 - AluSx SINE Alu -13 299 6 279 269 62 77 chr6 121594187 121594317 -67685237 + MIR SINE MIR 74 201 -61 2510 76 3 0 chr6 121595598 121595899 -67683655 + AluSq SINE Alu 1 302 -11 560 197 0 49 chr6 121595975 121596097 -67683457 + L2 LINE L2 3197 3312 -1 294 333 75 8 chr6 121596101 121596221 -67683333 - MIR SINE MIR -18 244 117 347 231 77 43 chr6 121596287 121596404 -67683150 + MIR3 SINE MIR 4 124 -84 243 0 0 0 chr6 121598891 121598918 -67680636 + (TG)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr6 121598934 121598954 -67680600 + (TG)n Simple_repeat Simple_repeat 2 21 0 345 248 104 32 chr6 121600443 121600568 -67678986 + L2 LINE L2 3180 3313 0 21 57 0 0 chr6 121605976 121606011 -67673543 + GC_rich Low_complexity Low_complexity 1 35 0 29 28 0 0 chr6 121606270 121606306 -67673248 + GC_rich Low_complexity Low_complexity 1 36 0 2045 87 66 3 chr6 121607420 121607706 -67671848 + AluSg SINE Alu 6 309 -1 763 216 62 35 chr6 121607934 121608165 -67671389 - MER58B DNA MER1_type -2084 336 96 2378 94 7 0 chr6 121608165 121608464 -67671090 + AluSq SINE Alu 1 301 -12 763 216 62 35 chr6 121608464 121608491 -67671063 - MER58B DNA MER1_type -2324 96 71 806 110 29 52 chr6 121608620 121608756 -67670798 - FLAM_C SINE Alu 0 133 1 822 88 109 0 chr6 121608855 121608992 -67670562 + L1MA5A LINE L1 6146 6297 0 2418 86 0 46 chr6 121609182 121609508 -67670046 + AluSx SINE Alu 1 311 -1 251 253 71 91 chr6 121610228 121610290 -67669264 - L2 LINE L2 -20 3252 3190 2152 112 0 11 chr6 121610290 121610616 -67668938 - AluSx SINE Alu 0 323 1 251 253 71 91 chr6 121610616 121610651 -67668903 - L2 LINE L2 -82 3190 3156 2128 134 0 0 chr6 121611117 121611409 -67668145 - AluJb SINE Alu -20 292 1 195 42 0 0 chr6 121611419 121611443 -67668111 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 2308 114 0 0 chr6 121611456 121611755 -67667799 + AluSc SINE Alu 1 299 -10 325 222 71 0 chr6 121612122 121612221 -67667333 + MER117 DNA MER1_type 1 106 -91 249 57 0 0 chr6 121612599 121612634 -67666920 + (CA)n Simple_repeat Simple_repeat 2 36 0 875 167 0 0 chr6 121612645 121612777 -67666777 - FLAM_C SINE Alu 0 133 2 672 171 9 0 chr6 121612811 121612922 -67666632 + MER81 DNA DNA 3 114 0 2466 90 0 0 chr6 121613695 121613996 -67665558 + AluSx SINE Alu 1 301 -11 393 203 62 125 chr6 121614217 121614292 -67665262 + MER5A DNA MER1_type 2 67 -122 839 163 16 0 chr6 121614292 121614421 -67665133 + FLAM_C SINE Alu 1 131 -2 393 203 62 125 chr6 121614421 121614473 -67665081 + MER5A DNA MER1_type 67 121 -68 1055 223 113 28 chr6 121615055 121615455 -67664099 - LTR56 LTR ERV1 0 445 12 2438 79 3 0 chr6 121616327 121616619 -67662935 + AluSc SINE Alu 1 293 -16 291 333 57 9 chr6 121616867 121616972 -67662582 + L2 LINE L2 3158 3267 -5 283 271 62 14 chr6 121617134 121617278 -67662276 - LTR67 LTR ERVL -1 556 406 1994 134 14 10 chr6 121618480 121618771 -67660783 - AluJb SINE Alu -8 304 13 1850 149 3 26 chr6 121619363 121619691 -67659863 + AluJb SINE Alu 1 312 0 23 33 0 0 chr6 121620382 121620412 -67659142 + AT_rich Low_complexity Low_complexity 1 30 0 241 290 99 37 chr6 121621029 121621191 -67658363 - L1ME LINE L1 -237 5884 5713 2272 98 7 10 chr6 121621279 121621585 -67657969 - AluSx SINE Alu -7 305 1 492 239 84 36 chr6 121621766 121621933 -67657621 + MIR SINE MIR 17 191 -71 3834 98 9 2 chr6 121621998 121622528 -67657026 - MER41A LTR ERV1 -20 534 1 1017 249 58 108 chr6 121622663 121623161 -67656393 + L2 LINE L2 2836 3308 -5 2101 125 7 3 chr6 121623670 121623967 -67655587 - AluSx SINE Alu -14 298 1 1660 166 21 28 chr6 121624450 121624734 -67654820 - AluJo SINE Alu -17 295 14 1614 121 60 57 chr6 121624739 121624876 -67654678 - AluJo SINE Alu -46 266 126 2321 89 0 3 chr6 121624876 121625168 -67654386 + AluSg SINE Alu 1 291 -19 1614 121 60 57 chr6 121625168 121625295 -67654259 - AluJo SINE Alu -186 126 1 432 242 242 17 chr6 121625547 121625725 -67653829 - MIR SINE MIR -34 228 11 2456 84 10 0 chr6 121626689 121626998 -67652556 - AluSx SINE Alu 0 312 1 2360 109 0 0 chr6 121627309 121627611 -67651943 - AluSq SINE Alu -11 302 1 609 124 0 31 chr6 121627613 121627710 -67651844 - FLAM_A SINE Alu -6 136 43 272 274 8 51 chr6 121628031 121628148 -67651406 - L1ME LINE L1 -421 5700 5589 1981 153 17 0 chr6 121628210 121628511 -67651043 + AluSx SINE Alu 1 306 -6 301 113 0 0 chr6 121628611 121628664 -67650890 + Alu SINE Alu 249 301 0 2236 169 61 16 chr6 121629188 121629614 -67649940 - MER65A LTR ERV1 0 445 1 317 149 0 0 chr6 121629737 121629784 -67649770 - MER8 DNA MER2_type 0 239 193 648 160 0 0 chr6 121629824 121629918 -67649636 - FLAM_A SINE Alu -25 117 24 11935 109 29 24 chr6 121629945 121630012 -67649542 + Tigger2 DNA MER2_type 798 863 -1855 1797 194 3 10 chr6 121630012 121630322 -67649232 - AluJo SINE Alu -4 308 1 11935 109 29 24 chr6 121630322 121630705 -67648849 + Tigger2 DNA MER2_type 863 1243 -1475 2436 89 0 3 chr6 121630705 121631007 -67648547 + AluSx SINE Alu 1 301 -11 11935 109 29 24 chr6 121631007 121632467 -67647087 + Tigger2 DNA MER2_type 1243 2718 0 1631 118 5 0 chr6 121632510 121632730 -67646824 + AluJb SINE Alu 87 307 -5 7121 104 56 4 chr6 121632952 121634026 -67645528 - L1MA2 LINE L1 -1 6303 5098 2166 121 0 0 chr6 121634026 121634330 -67645224 - AluSg SINE Alu 0 304 1 7121 104 56 4 chr6 121634330 121634856 -67644698 - L1MA2 LINE L1 -1206 5098 4601 1599 157 71 50 chr6 121634924 121635262 -67644292 - MER66B LTR ERV1 -141 345 1 11934 113 14 3 chr6 121635262 121637024 -67642530 - MER66B-int LTR ERV1 0 6676 4895 755 204 17 33 chr6 121637024 121637205 -67642349 - MER66-int LTR ERV1 -6206 470 293 2243 129 51 28 chr6 121637218 121637625 -67641929 - L1MA2 LINE L1 -1532 4614 4193 2282 96 0 16 chr6 121637625 121637928 -67641626 - AluSx SINE Alu -14 298 1 2243 129 51 28 chr6 121637928 121637991 -67641563 - L1MA2 LINE L1 -1953 4193 4133 1965 159 22 6 chr6 121638007 121638365 -67641189 - L1MA2 LINE L1 -2170 3976 3613 23 0 0 0 chr6 121638624 121638647 -67640907 + AT_rich Low_complexity Low_complexity 1 23 0 1043 269 91 14 chr6 121638771 121639209 -67640345 + HAL1b LINE L1 238 709 -639 811 165 0 0 chr6 121639250 121639368 -67640186 + FLAM_A SINE Alu 1 115 -18 2210 198 64 119 chr6 121639595 121639676 -67639878 + L1MC5 LINE L1 6476 6560 -1401 2339 58 24 0 chr6 121639676 121639970 -67639584 + AluY SINE Alu 1 301 -10 2210 198 64 119 chr6 121639970 121640805 -67638749 + L1MC5 LINE L1 6560 7364 -597 1696 155 6 50 chr6 121640856 121641178 -67638376 + AluJo SINE Alu 1 308 -4 533 214 59 37 chr6 121641664 121641851 -67637703 + L1MC5 LINE L1 7347 7537 -424 2115 100 34 7 chr6 121642137 121642428 -67637126 - AluSg SINE Alu -11 299 1 25 0 0 0 chr6 121643907 121643932 -67635622 + AT_rich Low_complexity Low_complexity 1 25 0 778 160 34 0 chr6 121643938 121644057 -67635497 + FLAM_A SINE Alu 1 123 -10 27 0 0 0 chr6 121644057 121644084 -67635470 + AT_rich Low_complexity Low_complexity 1 27 0 2127 132 0 0 chr6 121644658 121644954 -67634600 - AluSx SINE Alu -16 296 1 2345 73 7 3 chr6 121645185 121645485 -67634069 + AluY SINE Alu 1 301 -10 2440 48 0 54 chr6 121646032 121646347 -67633207 + AluY SINE Alu 1 298 -13 193 259 118 35 chr6 121646447 121646532 -67633022 - L2 LINE L2 -14 3299 3208 1650 142 58 58 chr6 121647367 121647505 -67632049 + AluJo SINE Alu 1 138 -174 1978 147 10 0 chr6 121647505 121647797 -67631757 + AluSx SINE Alu 1 295 -17 2153 99 0 3 chr6 121647799 121648113 -67631441 + AluSx SINE Alu 1 313 0 1650 142 58 58 chr6 121648113 121648281 -67631273 + AluJo SINE Alu 138 311 -1 2281 102 0 0 chr6 121649018 121649312 -67630242 + AluSc SINE Alu 1 294 -15 281 252 72 36 chr6 121649598 121649709 -67629845 - L2 LINE L2 -4 3268 3154 577 311 109 54 chr6 121650759 121651105 -67628449 - L2 LINE L2 -455 2859 2534 2029 81 11 11 chr6 121651105 121651376 -67628178 + AluY SINE Alu 33 303 -8 1791 79 9 4 chr6 121651376 121651603 -67627951 + AluSc SINE Alu 71 300 -9 577 311 109 54 chr6 121651603 121651641 -67627913 - L2 LINE L2 -780 2534 2500 1156 151 58 44 chr6 121651641 121651789 -67627765 + MER3 DNA MER1_type 1 154 -55 2226 111 0 10 chr6 121651789 121652086 -67627468 - AluSx SINE Alu -18 294 1 1156 151 58 44 chr6 121652086 121652143 -67627411 + MER3 DNA MER1_type 154 209 0 577 311 109 54 chr6 121652143 121652351 -67627203 - L2 LINE L2 -814 2500 2232 1946 138 10 10 chr6 121652815 121653119 -67626435 - AluSx SINE Alu -8 304 1 410 334 93 41 chr6 121653148 121653682 -67625872 - L2 LINE L2 0 3272 2686 1807 141 3 30 chr6 121653682 121653986 -67625568 + AluJo SINE Alu 1 296 -16 410 334 93 41 chr6 121653986 121654113 -67625441 - L2 LINE L2 -586 2686 2567 343 269 220 31 chr6 121654577 121654741 -67624813 + MLT1J LTR MaLR 109 241 -270 2242 90 10 0 chr6 121654741 121655030 -67624524 + AluSc SINE Alu 1 292 -17 343 269 220 31 chr6 121655030 121655188 -67624366 + MLT1J LTR MaLR 241 492 -19 186 299 149 19 chr6 121655528 121655635 -67623919 - MER5A DNA MER1_type -5 184 64 2619 58 0 6 chr6 121655891 121656203 -67623351 - AluY SINE Alu -1 310 1 790 159 55 0 chr6 121656331 121656476 -67623078 - L1MD2 LINE L1 -13 6346 6194 464 243 69 7 chr6 121656483 121656627 -67622927 - L1MD2 LINE L1 -233 6126 5974 722 268 141 14 chr6 121656742 121656962 -67622592 + MIR SINE MIR 2 249 -13 239 250 83 28 chr6 121656993 121657065 -67622489 - MER5B DNA MER1_type -102 76 1 200 229 185 22 chr6 121658082 121658195 -67621359 + MIR3 SINE MIR 70 199 -9 684 149 137 19 chr6 121658777 121658938 -67620616 - MER5A DNA MER1_type -4 185 6 1390 145 47 8 chr6 121659722 121659956 -67619598 + AluJb SINE Alu 1 243 -69 2517 80 3 0 chr6 121660079 121660390 -67619164 - AluSx SINE Alu 0 312 1 188 239 349 18 chr6 121660423 121660532 -67619022 + MER5A DNA MER1_type 43 187 -2 * 370 240 115 10 chr6 121660449 121660545 -67619009 - MER5A DNA MER1_type -80 109 4 740 155 80 128 chr6 121660554 121660741 -67618813 + MER5B DNA MER1_type 1 178 0 1173 138 0 0 chr6 121661101 121661275 -67618279 - AluSg/x SINE Alu -3 309 136 396 304 30 63 chr6 121661532 121661769 -67617785 - L2 LINE L2 -219 3053 2825 1016 191 64 0 chr6 121662421 121662609 -67616945 + MER20 DNA MER1_type 20 219 0 286 301 192 30 chr6 121662844 121662929 -67616625 + Charlie7 DNA MER1_type 1 71 -2541 2370 79 3 3 chr6 121662929 121663234 -67616320 - AluSx SINE Alu -7 305 1 286 301 192 30 chr6 121663234 121663351 -67616203 + Charlie7 DNA MER1_type 71 236 -2376 219 301 87 10 chr6 121663899 121664002 -67615552 + MIR3 SINE MIR 97 207 -1 21 95 0 0 chr6 121665070 121665133 -67614421 + GC_rich Low_complexity Low_complexity 1 63 0 710 206 8 8 chr6 121667855 121667981 -67611573 - FLAM_A SINE Alu -7 126 1 905 126 8 0 chr6 121668775 121668902 -67610652 - AluSx SINE Alu -181 132 5 1725 175 14 3 chr6 121670067 121670353 -67609201 - AluJo SINE Alu -23 289 1 977 257 189 25 chr6 121670525 121670964 -67608590 - MLT1J LTR MaLR 0 511 1 229 225 54 54 chr6 121671434 121671545 -67608009 - L1ME4a LINE L1 -92 6029 5919 2104 147 0 0 chr6 121671560 121671872 -67607682 - AluSx SINE Alu 0 312 1 257 232 152 36 chr6 121671960 121672072 -67607482 - L1ME4a LINE L1 -415 5706 5582 204 309 251 36 chr6 121672577 121673218 -67606336 - L2 LINE L2 -567 2747 1969 604 257 13 26 chr6 121673244 121673396 -67606158 - MER63A DNA MER1_type 0 210 61 21 0 0 0 chr6 121674142 121674163 -67605391 + AT_rich Low_complexity Low_complexity 1 21 0 2134 119 7 0 chr6 121675658 121675951 -67603603 + AluSx SINE Alu 1 295 -17 342 62 62 0 chr6 121676033 121676081 -67603473 - MADE1 DNA Mariner 0 80 30 393 159 68 34 chr6 121676168 121676256 -67603298 + MER58A DNA MER1_type 37 127 0 228 185 37 0 chr6 121676263 121676317 -67603237 + MER58A DNA MER1_type 169 224 0 181 328 17 0 chr6 121678724 121678782 -67600772 + L3 LINE CR1 477 535 -1042 2273 96 0 3 chr6 121681318 121681611 -67597943 - AluSx SINE Alu -20 292 1 6854 59 18 0 chr6 121682013 121683075 -67596479 - L1PA6 LINE L1 -1 6153 5060 2338 97 0 0 chr6 121683513 121683811 -67595743 + AluY SINE Alu 1 298 -13 296 123 25 267 chr6 121683851 121683990 -67595564 - LTR41 LTR ERVL -12 761 680 2064 112 0 31 chr6 121683990 121684314 -67595240 - AluSx SINE Alu 0 315 1 296 123 25 267 chr6 121684314 121684384 -67595170 - LTR41 LTR ERVL -93 680 595 273 243 117 48 chr6 121684730 121684833 -67594721 - L1MEc LINE L1 -5830 566 457 343 221 21 11 chr6 121684835 121684930 -67594624 - LTR41 LTR ERVL -677 96 1 362 197 16 0 chr6 121685179 121685240 -67594314 + AluSx SINE Alu 1 62 -246 256 264 0 0 chr6 121685240 121685293 -67594261 + ERVL LTR ERVL 3699 3751 -2013 1659 146 0 0 chr6 121685314 121685568 -67593986 + AluSx SINE Alu 54 307 0 1361 273 52 18 chr6 121685722 121686161 -67593393 - ERVL LTR ERVL -437 5327 4874 9311 280 48 38 chr6 121686236 121686932 -67592622 - ERVL LTR ERVL -1028 4736 4048 2285 98 56 34 chr6 121686932 121687288 -67592266 - THE1B LTR MaLR 0 364 1 9311 280 48 38 chr6 121687288 121689804 -67589750 - ERVL LTR ERVL -1716 4048 1492 2757 112 13 70 chr6 121690299 121690753 -67588801 - MSTC LTR MaLR 0 428 1 878 172 168 59 chr6 121690792 121691030 -67588524 - LTR41 LTR ERVL 0 773 510 1015 232 89 14 chr6 121691116 121691396 -67588158 - LTR41 LTR ERVL -472 301 1 2346 83 0 0 chr6 121693421 121693721 -67585833 - AluSq SINE Alu -13 300 1 599 143 0 20 chr6 121694477 121694575 -67584979 - FRAM SINE Alu -10 166 71 1111 290 101 36 chr6 121694819 121695402 -67584152 - L2 LINE L2 -849 2465 1845 1080 203 112 72 chr6 121695413 121695734 -67583820 + MLT1J LTR MaLR 5 338 -173 394 338 82 46 chr6 121695735 121696258 -67583296 - L2 LINE L2 -1479 1835 1294 331 272 124 66 chr6 121696262 121696656 -67582898 + MLT1K LTR MaLR 119 535 -53 607 270 167 14 chr6 121697569 121697791 -67581763 - MIR SINE MIR -1 261 6 238 242 136 0 chr6 121697872 121697938 -67581616 - MIR3 SINE MIR -23 185 111 2160 105 7 0 chr6 121698069 121698087 -67581467 - AluSc SINE Alu -12 297 281 378 0 0 0 chr6 121698087 121698129 -67581425 + (TG)n Simple_repeat Simple_repeat 1 42 0 2160 105 7 0 chr6 121698129 121698405 -67581149 - AluSc SINE Alu -28 281 1 204 274 137 8 chr6 121699056 121699180 -67580374 - L2 LINE L2 -465 2849 2710 1844 214 63 22 chr6 121699423 121699867 -67579687 + MLT1C LTR MaLR 6 467 0 256 150 200 88 chr6 121700247 121700327 -67579227 - MIR SINE MIR -92 116 28 1336 168 149 0 chr6 121700395 121700657 -67578897 - AluJb SINE Alu -11 301 1 1005 121 0 24 chr6 121700673 121700838 -67578716 - FRAM SINE Alu 0 176 16 561 292 56 37 chr6 121700839 121701049 -67578505 - MIR SINE MIR -32 230 16 2065 133 33 15 chr6 121701049 121701379 -67578175 - MER1B DNA MER1_type 0 337 2 2276 105 0 0 chr6 121702034 121702340 -67577214 + AluSx SINE Alu 1 306 -6 234 0 0 0 chr6 121704347 121704373 -67575181 + (CA)n Simple_repeat Simple_repeat 2 27 0 1978 140 0 9 chr6 121704955 121705270 -67574284 - AluSx SINE Alu 0 312 1 1550 200 32 47 chr6 121706901 121707281 -67572273 + MLT1A2 LTR MaLR 1 374 0 396 0 0 0 chr6 121708776 121708820 -67570734 + (TG)n Simple_repeat Simple_repeat 1 44 0 2049 101 37 0 chr6 121709137 121709435 -67570119 - AluSp SINE Alu -4 309 1 248 180 9 63 chr6 121709457 121709568 -67569986 + A-rich Low_complexity Low_complexity 1 105 0 2383 240 63 59 chr6 121710992 121711187 -67568367 - MER115 DNA AcHobo 0 693 500 2064 120 0 0 chr6 121711187 121711478 -67568076 - AluSx SINE Alu -6 306 16 2383 240 63 59 chr6 121711478 121711965 -67567589 - MER115 DNA AcHobo -193 500 8 252 0 0 0 chr6 121712188 121712216 -67567338 + (TG)n Simple_repeat Simple_repeat 2 29 0 421 279 67 103 chr6 121712502 121713003 -67566551 + L1ME4a LINE L1 5460 5978 -143 2372 139 5 14 chr6 121713003 121713370 -67566184 - THE1B LTR MaLR 0 364 1 421 279 67 103 chr6 121713370 121713438 -67566116 + L1ME4a LINE L1 5978 6009 -112 1624 131 57 18 chr6 121713438 121713742 -67565812 + AluJo SINE Alu 1 315 0 421 279 67 103 chr6 121713742 121713780 -67565774 + L1ME4a LINE L1 6009 6047 -74 25 83 0 0 chr6 121713785 121713845 -67565709 + AT_rich Low_complexity Low_complexity 1 60 0 240 278 35 35 chr6 121715473 121715485 -67564069 + L3 LINE CR1 1385 1396 -181 1651 136 0 0 chr6 121715485 121715728 -67563826 + AluSx SINE Alu 1 243 -69 240 278 35 35 chr6 121715728 121715830 -67563724 + L3 LINE CR1 1395 1499 -78 1950 144 50 17 chr6 121716025 121716364 -67563190 - L1MB3 LINE L1 0 6183 5830 2158 122 0 0 chr6 121716364 121716668 -67562886 - AluSx SINE Alu -8 304 1 1950 144 50 17 chr6 121716668 121716690 -67562864 - L1MB3 LINE L1 -353 5830 5810 28 29 0 0 chr6 121717215 121717250 -67562304 + AT_rich Low_complexity Low_complexity 1 35 0 1950 103 34 14 chr6 121717646 121717937 -67561617 + AluSx SINE Alu 9 305 -7 1079 202 21 37 chr6 121718319 121718562 -67560992 + MER8 DNA MER2_type 1 239 0 1304 178 13 0 chr6 121719019 121719250 -67560304 + AluJb SINE Alu 61 294 -18 2234 92 0 10 chr6 121720186 121720513 -67559041 + AluSp SINE Alu 1 313 0 26 50 0 0 chr6 121720853 121720893 -67558661 + AT_rich Low_complexity Low_complexity 1 40 0 729 239 83 17 chr6 121720894 121721124 -67558430 + L1MC4a LINE L1 5688 5932 -1876 3837 253 114 31 chr6 121721153 121722759 -67556795 + L2 LINE L2 1569 3313 0 481 171 154 0 chr6 121724494 121724617 -67554937 - MER103 DNA DNA -12 154 13 592 90 0 0 chr6 121725130 121725208 -67554346 - AluSq SINE Alu 0 303 226 771 85 0 3 chr6 121725208 121725350 -67554204 - AluSq SINE Alu -123 190 3 269 140 0 20 chr6 121725317 121725367 -67554187 - AluSg/x SINE Alu -132 168 120 * 3019 153 35 4 chr6 121725369 121725910 -67553644 - L1MC1 LINE L1 0 6333 5776 222 119 34 51 chr6 121726332 121726391 -67553163 + T-rich Low_complexity Low_complexity 3 60 0 728 217 41 62 chr6 121726414 121726537 -67553017 - Charlie7 DNA MER1_type -1922 690 573 1645 175 20 7 chr6 121726537 121726840 -67552714 + AluJo SINE Alu 2 308 -4 728 217 41 62 chr6 121726840 121726960 -67552594 - Charlie7 DNA MER1_type -2039 573 452 304 156 359 0 chr6 121727040 121727104 -67552450 - Charlie7 DNA MER1_type -2525 87 1 206 268 0 18 chr6 121727312 121727368 -67552186 + L3 LINE CR1 1080 1134 -443 1884 140 0 16 chr6 121727443 121727750 -67551804 - AluJb SINE Alu -10 302 1 1794 243 106 5 chr6 121728940 121729385 -67550169 - MER45C DNA AcHobo 0 953 464 310 221 250 0 chr6 121729619 121729723 -67549831 - MER45C DNA AcHobo -821 132 3 2025 79 65 0 chr6 121730703 121730980 -67548574 + AluSg SINE Alu 1 295 -15 2112 101 0 3 chr6 121732223 121732550 -67547004 - AluSq SINE Alu 0 326 1 259 311 223 0 chr6 121734411 121734514 -67545040 - MIR3 SINE MIR -50 158 33 35 0 0 0 chr6 121734581 121734616 -67544938 + AT_rich Low_complexity Low_complexity 1 35 0 456 296 271 25 chr6 121734914 121735272 -67544282 + MLT1L LTR MaLR 170 615 0 859 301 106 55 chr6 121735289 121736129 -67543425 - L2 LINE L2 -209 3063 2126 856 279 5 19 chr6 121736093 121736308 -67543246 + MIR SINE MIR 8 219 -43 * 1057 171 134 16 chr6 121736351 121736597 -67542957 - ORSL DNA AcHobo 0 275 1 588 338 81 3 chr6 121736628 121736962 -67542592 - L2 LINE L2 -1198 2116 1757 261 0 0 0 chr6 121738051 121738080 -67541474 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1801 142 4 0 chr6 121738086 121738361 -67541193 - AluSx SINE Alu -36 276 1 332 271 94 0 chr6 121738459 121738544 -67541010 - L1MC5 LINE L1 -102 7859 7767 22 56 0 0 chr6 121738594 121738630 -67540924 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr6 121739503 121739531 -67540023 + AT_rich Low_complexity Low_complexity 1 28 0 2218 205 108 19 chr6 121740061 121740582 -67538972 + MLT1F1 LTR MaLR 1 567 0 703 218 7 0 chr6 121741433 121741575 -67537979 + MER3 DNA MER1_type 2 144 -65 784 70 0 0 chr6 121741595 121741695 -67537859 - HY3 scRNA scRNA 0 101 2 36 53 0 0 chr6 121741698 121741755 -67537799 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr6 121741863 121741891 -67537663 + AT_rich Low_complexity Low_complexity 1 28 0 2352 196 59 8 chr6 121742406 121742900 -67536654 + LTR53 LTR ERVL 1 519 0 814 204 23 12 chr6 121743245 121743417 -67536137 - FRAM SINE Alu -3 173 1 1920 128 69 0 chr6 121743503 121743793 -67535761 + AluSx SINE Alu 1 310 -2 2277 57 27 44 chr6 121744086 121744384 -67535170 - AluY SINE Alu -18 293 1 1453 219 61 0 chr6 121744385 121744695 -67534859 - MER58B DNA MER1_type -11 330 2 302 235 15 15 chr6 121745436 121745504 -67534050 + MIR SINE MIR 21 88 -174 240 263 0 0 chr6 121747443 121747519 -67532035 + (CATATA)n Simple_repeat Simple_repeat 6 81 0 395 281 168 0 chr6 121751089 121751292 -67528262 - MIR SINE MIR -6 256 20 331 306 100 6 chr6 121753145 121753305 -67526249 - MIR SINE MIR -35 227 53 2043 106 0 0 chr6 121753314 121753588 -67525966 + AluY SINE Alu 37 310 -1 194 111 50 50 chr6 121753948 121754047 -67525507 + (TTAA)n Simple_repeat Simple_repeat 3 101 0 383 127 0 0 chr6 121754117 121754182 -67525372 - L1P4 LINE L1 -407 5756 5692 370 350 67 47 chr6 121754692 121755187 -67524367 + L2 LINE L2 700 1204 -2110 325 98 0 20 chr6 121755727 121755778 -67523776 - L1MB3 LINE L1 -7 6176 6127 635 155 0 0 chr6 121755829 121755932 -67523622 + U13 snRNA snRNA 1 103 -1 1948 160 3 0 chr6 121757617 121757923 -67521631 - AluSx SINE Alu -5 307 1 751 313 40 56 chr6 121758168 121758210 -67521344 + L2 LINE L2 2794 2835 -437 1211 180 28 0 chr6 121758210 121758421 -67521133 + MER20 DNA MER1_type 1 217 -2 751 313 40 56 chr6 121758421 121758872 -67520682 + L2 LINE L2 2835 3272 0 580 237 33 50 chr6 121759041 121759273 -67520281 + MER106B DNA MER1_type 1 1059 0 290 26 26 0 chr6 121759289 121759328 -67520226 + (TC)n Simple_repeat Simple_repeat 1 40 0 3889 143 49 8 chr6 121759351 121760021 -67519533 - L1MB3 LINE L1 -3 6180 5483 2410 84 3 0 chr6 121760024 121760323 -67519231 - AluSx SINE Alu -12 300 1 30 27 0 0 chr6 121760332 121760369 -67519185 + AT_rich Low_complexity Low_complexity 1 37 0 2009 89 0 0 chr6 121760727 121760974 -67518580 - AluSq SINE Alu -66 247 1 2019 130 11 11 chr6 121761004 121761327 -67518227 + AluSq SINE Alu 1 323 0 879 147 0 12 chr6 121761852 121762018 -67517536 - L1MB3 LINE L1 -38 6143 5982 246 363 27 0 chr6 121762289 121762435 -67517119 + L2 LINE L2 2911 3060 -212 604 294 107 6 chr6 121762573 121762750 -67516804 + MER91A DNA MER1_type 1 195 -1 329 279 145 23 chr6 121763034 121763206 -67516348 - MER117 DNA MER1_type 0 197 5 1565 227 119 9 chr6 121764399 121764818 -67514736 + LTR40c LTR ERVL 1 465 0 2238 114 0 25 chr6 121766533 121766848 -67512706 + AluSx SINE Alu 1 307 -5 2289 92 0 7 chr6 121766849 121767142 -67512412 + AluSc SINE Alu 1 291 -18 236 179 54 0 chr6 121767238 121767294 -67512260 + GA-rich Low_complexity Low_complexity 5 63 0 299 296 0 0 chr6 121767794 121767865 -67511689 + G-rich Low_complexity Low_complexity 5 75 0 239 200 50 25 chr6 121768115 121768195 -67511359 + GA-rich Low_complexity Low_complexity 3 84 0 1373 192 39 70 chr6 121768933 121769319 -67510235 + MLT1A2 LTR MaLR 1 374 0 554 262 117 4 chr6 121769514 121769636 -67509918 - L1MB7 LINE L1 0 6184 6063 2676 199 29 11 chr6 121769636 121770273 -67509281 - L1ME1 LINE L1 -213 6029 5345 1002 315 82 51 chr6 121770685 121771091 -67508463 - L2 LINE L2 -459 2855 2463 2162 134 0 3 chr6 121771091 121771389 -67508165 + AluSx SINE Alu 1 297 -15 1002 315 82 51 chr6 121771389 121771967 -67507587 - L2 LINE L2 -851 2463 1840 1883 184 0 0 chr6 121773742 121774041 -67505513 + AluJo SINE Alu 1 299 -13 458 203 55 31 chr6 121774197 121774325 -67505229 + L1MC4a LINE L1 5777 5907 -1901 * 2486 210 10 19 chr6 121774308 121774651 -67504903 + L1MB7 LINE L1 3912 4249 -1897 195 100 0 0 chr6 121774651 121774681 -67504873 + (CA)n Simple_repeat Simple_repeat 2 31 0 2486 210 10 19 chr6 121774681 121774933 -67504621 + L1MB7 LINE L1 4249 4502 -1644 14430 116 51 41 chr6 121774933 121776401 -67503153 + Tigger1 DNA MER2_type 2 1505 -913 1365 102 25 86 chr6 121776401 121776645 -67502909 - MER30 DNA MER1_type -1 229 1 14430 116 51 41 chr6 121776645 121777568 -67501986 + Tigger1 DNA MER2_type 1505 2417 -1 4459 183 63 38 chr6 121777568 121778727 -67500827 + L1MB7 LINE L1 4499 5628 -556 2121 114 0 0 chr6 121778727 121779036 -67500518 + AluY SINE Alu 1 309 0 4459 183 63 38 chr6 121779036 121779457 -67500097 + L1MB7 LINE L1 5628 6130 -54 2113 125 3 3 chr6 121779457 121779752 -67499802 - AluSc SINE Alu -14 295 1 4459 183 63 38 chr6 121779752 121779791 -67499763 + L1MB7 LINE L1 6130 6167 -17 295 252 0 17 chr6 121779876 121779995 -67499559 + GA-rich Low_complexity Low_complexity 1 117 0 1512 192 131 39 chr6 121780761 121781039 -67498515 + MSTD LTR MaLR 4 324 -72 8731 61 3 4 chr6 121781039 121782111 -67497443 - MER11C LTR ERVK 0 1071 1 1512 192 131 39 chr6 121782111 121782192 -67497362 + MSTD LTR MaLR 324 396 0 187 298 50 16 chr6 121782599 121782720 -67496834 + L2 LINE L2 1932 2056 -1258 1008 195 0 0 chr6 121782804 121782968 -67496586 - FRAM SINE Alu -13 163 1 288 299 71 8 chr6 121783130 121783257 -67496297 + MIR SINE MIR 78 212 -50 1207 175 66 126 chr6 121783291 121783657 -67495897 - MER2 DNA MER2_type 0 345 2 946 200 9 60 chr6 121784136 121784351 -67495203 + MER20 DNA MER1_type 16 219 0 227 258 117 23 chr6 121785809 121785937 -67493617 + L2 LINE L2 2049 2188 -1126 615 170 7 14 chr6 121786118 121786259 -67493295 + CT-rich Low_complexity Low_complexity 1 140 0 1521 208 10 10 chr6 121786276 121786569 -67492985 - AluJo SINE Alu -13 299 7 2297 129 10 77 chr6 121786645 121787063 -67492491 - MLT1B LTR MaLR 0 390 1 219 319 0 29 chr6 121787066 121787135 -67492419 + L2 LINE L2 3030 3096 -176 510 307 74 0 chr6 121787255 121787444 -67492110 + MIR SINE MIR 53 255 -7 264 393 22 0 chr6 121787734 121787869 -67491685 - L2 LINE L2 -8 3305 3168 593 217 5 142 chr6 121788423 121788635 -67490919 + MIR SINE MIR 24 206 -56 2325 91 0 3 chr6 121788787 121789083 -67490471 - AluY SINE Alu -16 295 1 356 219 69 62 chr6 121789129 121789289 -67490265 - MIR SINE MIR -46 216 56 22 0 0 0 chr6 121789776 121789798 -67489756 + AT_rich Low_complexity Low_complexity 1 22 0 1962 157 3 6 chr6 121790017 121790329 -67489225 - AluSx SINE Alu 0 312 2 21 0 0 0 chr6 121790333 121790354 -67489200 + AT_rich Low_complexity Low_complexity 1 21 0 2099 147 0 3 chr6 121790516 121790828 -67488726 + AluJb SINE Alu 1 311 -1 750 319 82 14 chr6 121790938 121791558 -67487996 + L1ME4a LINE L1 5309 5970 -151 567 217 14 138 chr6 121791892 121792109 -67487445 - MIR3 SINE MIR -9 199 10 30 59 0 0 chr6 121792154 121792205 -67487349 + AT_rich Low_complexity Low_complexity 1 51 0 2451 47 7 7 chr6 121792951 121793249 -67486305 + AluY SINE Alu 1 298 -13 220 339 77 39 chr6 121793947 121794077 -67485477 + L2 LINE L2 3071 3205 -67 209 260 0 60 chr6 121796080 121796130 -67483424 + MIR SINE MIR 20 66 -196 440 163 34 47 chr6 121796797 121796919 -67482635 + MER34 LTR ERV1 452 542 0 568 160 40 0 chr6 121797657 121797757 -67481797 + MER53 DNA DNA 1 104 -85 1045 92 8 0 chr6 121798989 121799120 -67480434 + AluY SINE Alu 1 132 -179 43799 32 22 1 chr6 121799124 121805152 -67474402 + L1PA2 LINE L1 1 6155 0 1464 69 0 11 chr6 121805175 121805363 -67474191 + AluY SINE Alu 119 304 -7 229 298 155 61 chr6 121805731 121805997 -67473557 + L2 LINE L2 1840 2080 -1234 2246 112 0 3 chr6 121805997 121806293 -67473261 + AluSx SINE Alu 4 298 -14 229 298 155 61 chr6 121806293 121806697 -67472857 + L2 LINE L2 2080 2573 -741 23 0 0 0 chr6 121807916 121807939 -67471615 + AT_rich Low_complexity Low_complexity 1 23 0 435 256 86 42 chr6 121811290 121811501 -67468053 + MIR SINE MIR 1 216 -46 1729 195 96 12 chr6 121811591 121812017 -67467537 + MLT1C LTR MaLR 6 467 0 1500 325 64 20 chr6 121812396 121813191 -67466363 + L2 LINE L2 1721 2559 -755 2632 195 115 48 chr6 121813191 121813965 -67465589 + LTR1B LTR ERV1 1 826 0 1500 325 64 20 chr6 121813965 121814049 -67465505 + L2 LINE L2 2559 2638 -676 2280 87 0 11 chr6 121814193 121814480 -67465074 - AluSc SINE Alu -24 285 2 2012 141 10 3 chr6 121814537 121814828 -67464726 - AluSx SINE Alu -19 293 1 665 219 183 13 chr6 121816050 121816274 -67463280 + L2 LINE L2 2282 2543 -771 456 312 41 6 chr6 121816309 121816479 -67463075 + L2 LINE L2 3138 3313 0 241 330 120 34 chr6 121816496 121816935 -67462619 - L2 LINE L2 -110 3162 2686 2085 128 28 0 chr6 121816987 121817276 -67462278 + AluSx SINE Alu 1 297 -15 2219 104 0 0 chr6 121818029 121818318 -67461236 + AluSq SINE Alu 1 289 -24 1332 180 64 22 chr6 121818816 121819127 -67460427 + MER33 DNA MER1_type 1 324 0 370 300 100 6 chr6 121821427 121821587 -67457967 + MIR SINE MIR 70 244 -18 1156 252 94 40 chr6 121821956 121822437 -67457117 + MLT1J LTR MaLR 5 511 0 528 208 39 45 chr6 121823484 121823638 -67455916 + L1ME4a LINE L1 5965 6117 -4 2925 196 19 11 chr6 121824445 121825017 -67454537 + L1MD3 LINE L1 7404 7980 -15 1610 159 50 27 chr6 121825049 121825350 -67454204 + AluJb SINE Alu 1 308 -4 538 138 0 36 chr6 121825942 121826080 -67453474 + (GGGGA)n Simple_repeat Simple_repeat 2 134 0 198 103 0 0 chr6 121826143 121826172 -67453382 + (GGAAA)n Simple_repeat Simple_repeat 2 30 0 251 118 0 0 chr6 121826307 121826341 -67453213 - Alu SINE Alu -268 34 1 2274 88 0 53 chr6 121826392 121826712 -67452842 + AluSq SINE Alu 1 303 -10 3166 265 56 46 chr6 121827022 121827877 -67451677 + L1MEc LINE L1 258 1104 -5503 2577 56 0 0 chr6 121827877 121828181 -67451373 - AluY SINE Alu -7 304 1 3166 265 56 46 chr6 121828181 121828265 -67451289 + L1MEc LINE L1 1104 1186 -5421 1970 134 10 26 chr6 121828265 121828571 -67450983 + AluSx SINE Alu 11 311 -1 3166 265 56 46 chr6 121828571 121829052 -67450502 + L1MEc LINE L1 1186 1692 -4915 2632 108 3 24 chr6 121829065 121829446 -67450108 + L1PA16 LINE L1 5794 6166 0 2774 104 3 6 chr6 121829570 121829934 -67449620 - THE1B LTR MaLR -1 363 1 12362 89 7 27 chr6 121829934 121831547 -67448007 - THE1B-int LTR MaLR 0 1580 1 2845 95 14 0 chr6 121831547 121831906 -67447648 - THE1B LTR MaLR 0 364 1 540 236 52 28 chr6 121832184 121832416 -67447138 + L1MEc LINE L1 1693 1974 -4512 1150 155 0 48 chr6 121832422 121832628 -67446926 - MER20 DNA MER1_type -1 218 23 403 262 184 32 chr6 121832890 121833110 -67446444 - L1ME4a LINE L1 -14 6107 5922 2403 117 18 92 chr6 121833110 121833545 -67446009 - MER57A LTR ERV1 0 403 1 403 262 184 32 chr6 121833545 121833732 -67445822 - L1ME4a LINE L1 -199 5922 5638 299 156 0 0 chr6 121833732 121833777 -67445777 + Alu SINE Alu 1 45 -256 1908 123 0 0 chr6 121833777 121834038 -67445516 - AluSx SINE Alu -51 261 1 188 86 29 0 chr6 121836357 121836392 -67443162 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 265 283 0 0 chr6 121836598 121836658 -67442896 + L2 LINE L2 3247 3306 -7 334 250 71 18 chr6 121836845 121836957 -67442597 - MIR SINE MIR -50 212 95 448 207 60 9 chr6 121837534 121837650 -67441904 + LTR43 LTR ERV1 189 310 -292 197 195 195 0 chr6 121839866 121839907 -67439647 - L2 LINE L2 -19 3294 3246 22 94 0 0 chr6 121839960 121840024 -67439530 + AT_rich Low_complexity Low_complexity 1 64 0 2793 59 0 12 chr6 121840210 121840547 -67439007 + L1PA5 LINE L1 5821 6153 -1 26 0 0 0 chr6 121840541 121840567 -67438987 + AT_rich Low_complexity Low_complexity 1 26 0 1999 138 8 59 chr6 121840660 121841015 -67438539 - MER1B DNA MER1_type 0 337 1 306 250 54 0 chr6 121841048 121841140 -67438414 + L1MEc LINE L1 2377 2473 -3955 243 281 51 66 chr6 121841413 121841482 -67438072 - MLT1J2 LTR MaLR 0 450 381 1834 125 45 0 chr6 121841482 121841737 -67437817 + AluSx SINE Alu 16 285 -27 243 0 0 0 chr6 121841737 121841764 -67437790 + (CAAT)n Simple_repeat Simple_repeat 1 27 0 243 281 51 66 chr6 121841772 121841898 -67437656 - MLT1J2 LTR MaLR -69 381 258 1388 245 72 28 chr6 121841999 121842529 -67437025 - L1M4 LINE L1 -2168 3978 3426 4739 150 33 27 chr6 121842623 121843624 -67435930 - L1MB8 LINE L1 -1 6177 5172 1313 204 58 37 chr6 121843625 121843706 -67435848 - L1M4 LINE L1 -2802 3344 3266 2368 109 0 0 chr6 121843706 121844017 -67435537 - AluSx SINE Alu -1 311 1 1313 204 58 37 chr6 121844017 121844397 -67435157 - L1M4 LINE L1 -2880 3266 2873 979 256 47 3 chr6 121844399 121844720 -67434834 - L1M4 LINE L1 -3313 2833 2499 351 0 0 0 chr6 121844732 121844771 -67434783 + (TA)n Simple_repeat Simple_repeat 2 40 0 2317 89 3 0 chr6 121844782 121845075 -67434479 - AluSp SINE Alu -19 294 1 292 144 0 7 chr6 121845856 121845920 -67433634 + Alu SINE Alu 2 39 -260 1891 108 0 0 chr6 121845920 121846161 -67433393 - AluSg SINE Alu -69 241 1 1864 159 3 7 chr6 121847464 121847753 -67431801 - AluJo SINE Alu -24 288 1 380 138 21 128 chr6 121848241 121848294 -67431260 - MSTD LTR MaLR -312 84 44 2026 131 7 10 chr6 121848294 121848592 -67430962 - AluSx SINE Alu -15 297 1 380 138 21 128 chr6 121848592 121848632 -67430922 - MSTD LTR MaLR -352 44 1 1849 127 19 51 chr6 121848672 121848988 -67430566 + AluJo SINE Alu 2 307 -5 29 0 0 0 chr6 121849133 121849162 -67430392 + AT_rich Low_complexity Low_complexity 1 29 0 2966 182 18 55 chr6 121849826 121850447 -67429107 + MER77 LTR ERV1 4 601 -4 2331 80 0 20 chr6 121850864 121851166 -67428388 + AluSq SINE Alu 1 296 -17 21 82 0 0 chr6 121851409 121851458 -67428096 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr6 121851988 121852011 -67427543 + (CAA)n Simple_repeat Simple_repeat 2 24 0 491 206 29 82 chr6 121853110 121853161 -67426393 + MER112 DNA MER1_type 95 147 -113 2058 137 0 10 chr6 121853161 121853467 -67426087 - AluSx SINE Alu -9 303 1 491 206 29 82 chr6 121853467 121853513 -67426041 + MER112 DNA MER1_type 147 194 -66 2163 115 3 7 chr6 121853513 121853818 -67425736 + AluSx SINE Alu 1 304 -8 491 206 29 82 chr6 121853818 121853889 -67425665 + MER112 DNA MER1_type 194 255 -5 195 42 0 0 chr6 121854701 121854725 -67424829 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1894 125 29 7 chr6 121854729 121855008 -67424546 - AluSx SINE Alu -27 285 1 21 0 0 0 chr6 121855672 121855693 -67423861 + AT_rich Low_complexity Low_complexity 1 21 0 2214 109 3 3 chr6 121855725 121856029 -67423525 + AluSx SINE Alu 1 304 -8 743 264 52 52 chr6 121857010 121857260 -67422294 - MIR SINE MIR -10 252 3 2287 92 7 0 chr6 121857314 121857606 -67421948 - AluSc SINE Alu -13 296 3 22 35 0 0 chr6 121857610 121857639 -67421915 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr6 121858563 121858591 -67420963 + AT_rich Low_complexity Low_complexity 1 28 0 239 288 55 119 chr6 121859795 121860031 -67419523 - L2 LINE L2 -19 3294 3074 233 154 39 0 chr6 121860161 121860213 -67419341 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 22 35 0 0 chr6 121860782 121860811 -67418743 + AT_rich Low_complexity Low_complexity 1 29 0 201 74 0 0 chr6 121860814 121860841 -67418713 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 930 128 0 0 chr6 121862799 121862932 -67416622 + FLAM_C SINE Alu 1 133 0 4234 159 73 16 chr6 121863439 121863909 -67415645 + L1MD2 LINE L1 5268 5804 -555 2132 126 0 3 chr6 121863909 121864202 -67415352 - AluSx SINE Alu -20 292 1 4234 159 73 16 chr6 121864202 121864534 -67415020 + L1MD2 LINE L1 5804 6116 -243 256 362 28 17 chr6 121864595 121864772 -67414782 + L2 LINE L2 2696 2874 -440 22 35 0 0 chr6 121866803 121866832 -67412722 + AT_rich Low_complexity Low_complexity 1 29 0 1017 187 108 5 chr6 121867652 121867866 -67411688 - MER46A DNA MER2_type 0 236 1 34 0 0 0 chr6 121868783 121868817 -67410737 + AT_rich Low_complexity Low_complexity 1 34 0 1835 191 0 13 chr6 121868862 121869176 -67410378 + AluJo SINE Alu 1 310 -2 2079 131 10 6 chr6 121869269 121869581 -67409973 - AluSq SINE Alu 0 313 1 435 38 0 0 chr6 121869727 121869780 -67409774 + (CA)n Simple_repeat Simple_repeat 2 54 0 507 157 157 17 chr6 121869810 121869925 -67409629 + L1MC2 LINE L1 6199 6329 -15 2366 84 0 7 chr6 121869925 121870233 -67409321 + AluSq SINE Alu 1 306 -7 1482 259 139 12 chr6 121870267 121871049 -67408505 + L1M4c LINE L1 1205 2243 -4320 325 261 42 0 chr6 121871062 121871181 -67408373 - L1M4 LINE L1 -1407 4739 4616 813 253 68 29 chr6 121871376 121871724 -67407830 - L1MEc LINE L1 -4579 1731 1398 1732 95 0 0 chr6 121871724 121871945 -67407609 - AluSg/x SINE Alu -8 302 82 813 253 68 29 chr6 121871945 121872099 -67407455 - L1MEc LINE L1 -4912 1398 1062 10451 25 0 0 chr6 121872294 121874302 -67405252 + L1PA3 LINE L1 4159 6167 0 27 0 0 0 chr6 121875132 121875159 -67404395 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr6 121875907 121875931 -67403623 + AT_rich Low_complexity Low_complexity 1 24 0 194 435 11 0 chr6 121876831 121876923 -67402631 - MIR SINE MIR -62 146 54 630 128 0 0 chr6 121879402 121879519 -67400035 + (GA)n Simple_repeat Simple_repeat 1 117 0 22 35 0 0 chr6 121879774 121879803 -67399751 + AT_rich Low_complexity Low_complexity 1 29 0 2831 72 20 35 chr6 121879803 121880205 -67399349 - L1PA8A LINE L1 -2 6129 5734 30 27 0 0 chr6 121880753 121880790 -67398764 + AT_rich Low_complexity Low_complexity 1 37 0 303 321 84 42 chr6 121880897 121880927 -67398627 + L1ME LINE L1 4903 4930 -1216 1771 132 8 4 chr6 121880927 121881192 -67398362 + AluSg SINE Alu 33 298 -12 303 321 84 42 chr6 121881192 121881278 -67398276 + L1ME LINE L1 4930 5011 -1135 2296 72 0 0 chr6 121881278 121881557 -67397997 + AluY SINE Alu 1 279 -32 180 0 0 0 chr6 121881557 121881577 -67397977 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 303 321 84 42 chr6 121881577 121881712 -67397842 + L1ME LINE L1 5011 5139 -1007 2239 92 7 0 chr6 121881712 121882007 -67397547 + AluSg SINE Alu 1 297 -13 303 321 84 42 chr6 121882007 121882157 -67397397 + L1ME LINE L1 5139 5324 -822 1072 96 0 0 chr6 121882161 121882324 -67397230 + AluSg/x SINE Alu 147 309 0 226 280 40 40 chr6 121882361 121882436 -67397118 + MIR SINE MIR 18 92 -170 2824 146 3 51 chr6 121882450 121882478 -67397076 + Tigger7 DNA MER2_type 65 93 -615 1523 178 17 45 chr6 121882478 121882620 -67396934 + AluSx SINE Alu 3 134 -178 2250 103 0 34 chr6 121882620 121882941 -67396613 + AluSx SINE Alu 1 310 -2 1523 178 17 45 chr6 121882941 121883090 -67396464 + AluSx SINE Alu 134 286 -26 2824 146 3 51 chr6 121883090 121883529 -67396025 + Tigger7 DNA MER2_type 93 510 -198 578 154 29 58 chr6 121883522 121883626 -67395928 + Tigger7 DNA MER2_type 2387 2487 0 * 601 247 52 10 chr6 121883771 121883965 -67395589 + L1ME LINE L1 5526 5727 -394 1511 236 126 17 chr6 121883972 121884732 -67394822 + L2 LINE L2 2463 3313 0 2156 118 0 0 chr6 121884808 121885105 -67394449 + AluSg SINE Alu 1 297 -13 1837 134 18 14 chr6 121885355 121885707 -67393847 + AluSx SINE Alu 1 353 0 399 298 107 0 chr6 121885709 121885830 -67393724 + MIR SINE MIR 26 159 -103 18243 40 1 0 chr6 121885830 121888851 -67390703 - L1PA5 LINE L1 0 6154 3132 1875 141 9 54 chr6 121888884 121889218 -67390336 + MER1B DNA MER1_type 1 319 -20 348 292 10 0 chr6 121889225 121889321 -67390233 + MIR SINE MIR 166 262 0 836 258 100 47 chr6 121889419 121890040 -67389514 + L1ME3A LINE L1 5254 5907 -263 281 125 4 20 chr6 121890057 121890113 -67389441 - FLAM SINE Alu -4 129 82 668 328 82 58 chr6 121890154 121890809 -67388745 - L1MEd LINE L1 -5443 676 6 1291 256 29 3 chr6 121891351 121891698 -67387856 + L1MC4 LINE L1 7160 7515 -527 21 36 0 0 chr6 121891716 121891744 -67387810 + AT_rich Low_complexity Low_complexity 1 28 0 2093 147 72 68 chr6 121891806 121892261 -67387293 + L1MB2 LINE L1 5627 6083 -88 1134 250 57 103 chr6 121892474 121893038 -67386516 + HAL1 LINE L1 8 545 -1962 2411 73 0 3 chr6 121893189 121893491 -67386063 - AluSx SINE Alu -11 301 1 281 250 28 14 chr6 121893491 121893563 -67385991 + HAL1 LINE L1 797 869 -1638 754 370 72 23 chr6 121893677 121894317 -67385237 - L2 LINE L2 -429 2885 2215 2236 85 3 28 chr6 121894480 121894798 -67384756 + AluSg SINE Alu 1 310 0 2347 68 0 0 chr6 121895215 121895522 -67384032 - AluSc SINE Alu 0 307 1 24 0 0 0 chr6 121895566 121895590 -67383964 + AT_rich Low_complexity Low_complexity 1 24 0 276 30 0 0 chr6 121896674 121896707 -67382847 + (CAAT)n Simple_repeat Simple_repeat 3 35 0 538 202 58 0 chr6 121896707 121896811 -67382743 - FLAM_A SINE Alu -29 113 4 276 30 0 0 chr6 121896882 121896915 -67382639 + (TA)n Simple_repeat Simple_repeat 1 33 0 301 278 9 56 chr6 121897529 121897637 -67381917 - L2 LINE L2 -172 3100 2998 724 253 99 6 chr6 121897802 121897984 -67381570 - MIR SINE MIR -62 200 2 191 310 159 25 chr6 121898088 121898317 -67381237 - L2 LINE L2 -479 2835 2571 2120 125 0 23 chr6 121898317 121898621 -67380933 - AluSx SINE Alu -15 297 1 776 215 117 31 chr6 121898857 121899080 -67380474 - MIR SINE MIR 0 262 21 22 0 0 0 chr6 121899174 121899196 -67380358 + AT_rich Low_complexity Low_complexity 1 22 0 251 212 0 45 chr6 121899199 121899265 -67380289 - L2 LINE L2 -1067 2247 2185 532 310 11 48 chr6 121899278 121899465 -67380089 + MER5A DNA MER1_type 10 189 0 2133 110 0 20 chr6 121899587 121899887 -67379667 - AluSg SINE Alu -16 294 1 228 250 0 0 chr6 121899899 121899955 -67379599 - HsTC2 DNA Tc2 -5 1893 1838 191 130 0 22 chr6 121900181 121900227 -67379327 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 383 311 19 0 chr6 121900235 121900341 -67379213 + L1MEd LINE L1 543 650 -5469 456 19 0 0 chr6 121901449 121901502 -67378052 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 36 0 0 chr6 121901740 121901768 -67377786 + AT_rich Low_complexity Low_complexity 1 28 0 597 246 214 5 chr6 121902174 121902389 -67377165 + MIR SINE MIR 3 262 0 348 327 224 15 chr6 121902813 121903269 -67376285 + L2 LINE L2 2303 2853 -461 214 396 101 44 chr6 121903318 121903545 -67376009 + L2 LINE L2 2993 3232 -40 2115 102 0 4 chr6 121904084 121904359 -67375195 + AluSx SINE Alu 14 287 -25 221 338 54 0 chr6 121904738 121904812 -67374742 - L2 LINE L2 -20 3252 3175 363 170 113 57 chr6 121905273 121905414 -67374140 - L1ME4a LINE L1 -5 6116 5968 285 254 88 26 chr6 121905548 121905662 -67373892 - L1ME4a LINE L1 -431 5690 5570 2135 104 7 0 chr6 121905932 121906219 -67373335 + AluSp SINE Alu 1 289 -24 644 60 30 0 chr6 121906220 121906320 -67373234 + (CATAA)n Simple_repeat Simple_repeat 3 105 0 324 287 89 74 chr6 121906540 121906742 -67372812 - MIR SINE MIR -50 212 8 2466 136 37 67 chr6 121907409 121907945 -67371609 - L1MA6 LINE L1 0 6300 5781 2936 139 12 16 chr6 121907954 121908470 -67371084 + L1MA6 LINE L1 5255 5768 -523 472 191 154 0 chr6 121908698 121908834 -67370720 + MER104 DNA Tc2 18 174 -6 20694 79 9 1 chr6 121909190 121912857 -67366697 + L1PA7 LINE L1 2442 6143 -11 448 191 92 14 chr6 121913008 121913149 -67366405 + MER103 DNA DNA 1 152 -14 283 116 0 0 chr6 121913618 121913661 -67365893 + U5 snRNA snRNA 1 43 -73 1741 121 103 11 chr6 121913894 121914175 -67365379 + AluSq SINE Alu 1 307 -6 2162 126 0 0 chr6 121914448 121914750 -67364804 - AluSx SINE Alu -10 302 1 1940 138 0 37 chr6 121915463 121915760 -67363794 - AluSx SINE Alu -24 288 3 356 323 103 7 chr6 121915978 121916133 -67363421 + L1ME3A LINE L1 4083 4252 -1894 3461 123 15 19 chr6 121916136 121916664 -67362890 - MER1A DNA MER1_type 0 527 2 364 313 71 28 chr6 121916815 121917250 -67362304 + L1ME3A LINE L1 4733 5186 -960 792 264 85 72 chr6 121917292 121917524 -67362030 + L1ME3A LINE L1 5255 5483 -687 1678 168 10 28 chr6 121917524 121917849 -67361705 + AluJb SINE Alu 3 322 0 792 264 85 72 chr6 121917849 121918277 -67361277 + L1ME3A LINE L1 5483 5881 -289 1281 204 59 12 chr6 121919710 121920049 -67359505 + L1MC2 LINE L1 4942 5296 -850 852 191 19 0 chr6 121920049 121920206 -67359348 + FRAM SINE Alu 1 159 -17 2930 156 60 32 chr6 121920207 121920490 -67359064 + L1MC2 LINE L1 5286 5560 -784 2518 55 3 0 chr6 121920490 121920798 -67358756 + AluY SINE Alu 1 309 -2 2930 156 60 32 chr6 121920798 121921131 -67358423 + L1MC2 LINE L1 5560 5919 -425 2174 129 0 0 chr6 121921282 121921584 -67357970 - AluSx SINE Alu -10 302 1 2328 110 7 0 chr6 121921706 121922016 -67357538 - AluSx SINE Alu 0 312 1 337 329 90 105 chr6 121922169 121922503 -67357051 - L2 LINE L2 -1 3271 2943 * 2331 234 144 78 chr6 121922502 121922565 -67356989 + L2 LINE L2 1782 1839 -1474 2238 68 7 4 chr6 121922565 121922882 -67356672 + AluSq SINE Alu 5 322 0 2331 234 144 78 chr6 121922882 121923616 -67355938 + L2 LINE L2 1839 2523 -790 1325 139 26 171 chr6 121923616 121923961 -67355593 + AluJb SINE Alu 1 295 -7 1989 133 7 0 chr6 121923963 121924241 -67355313 + AluSq SINE Alu 1 280 -33 2331 234 144 78 chr6 121924241 121924872 -67354682 + L2 LINE L2 2523 3310 -3 851 354 144 14 chr6 121924931 121925632 -67353922 - L2 LINE L2 -460 2854 2063 230 319 211 42 chr6 121925914 121926127 -67353427 + L2 LINE L2 2972 3220 -52 21 0 0 0 chr6 121929088 121929109 -67350445 + AT_rich Low_complexity Low_complexity 1 21 0 564 263 171 24 chr6 121930020 121930225 -67349329 + MIR SINE MIR 8 242 -20 228 268 127 0 chr6 121930597 121930668 -67348886 - L2 LINE L2 -3 3269 3190 463 308 52 38 chr6 121930726 121930937 -67348617 - L2 LINE L2 -243 3070 2857 1449 149 76 11 chr6 121930995 121931253 -67348301 - MER7A DNA MER2_type -2 344 72 422 145 0 29 chr6 121931253 121931322 -67348232 + Tigger2 DNA MER2_type 1 67 -2651 1719 160 3 28 chr6 121931334 121931642 -67347912 + AluJo SINE Alu 1 301 0 2821 131 21 2 chr6 121931642 121932071 -67347483 + Tigger2 DNA MER2_type 2282 2718 0 247 296 42 14 chr6 121932071 121932142 -67347412 - MER7A DNA MER2_type -275 73 1 723 270 16 16 chr6 121932146 121932331 -67347223 + MIR SINE MIR 74 258 -4 1038 312 64 22 chr6 121932349 121932846 -67346708 - L2 LINE L2 -493 2821 2304 280 353 136 5 chr6 121932924 121933108 -67346446 + L2 LINE L2 2648 2855 -459 967 283 140 8 chr6 121934047 121934447 -67345107 - MLT1L LTR MaLR -59 556 104 2171 89 4 0 chr6 121935248 121935557 -67343997 - AluSg SINE Alu 0 310 1 2114 107 28 3 chr6 121936042 121936332 -67343222 - AluSx SINE Alu -15 297 1 252 0 0 0 chr6 121936865 121936893 -67342661 + (TG)n Simple_repeat Simple_repeat 1 28 0 2175 93 0 0 chr6 121936893 121937171 -67342383 - AluY SINE Alu -33 278 1 21 71 0 0 chr6 121937690 121937732 -67341822 + AT_rich Low_complexity Low_complexity 1 42 0 1929 106 29 0 chr6 121937812 121938130 -67341424 - AluSq SINE Alu 0 326 1 262 341 85 0 chr6 121939177 121939306 -67340248 + MIR SINE MIR 73 212 -50 480 246 113 0 chr6 121939343 121939485 -67340069 + MIR SINE MIR 105 262 0 509 216 72 24 chr6 121939893 121940018 -67339536 + MIR SINE MIR 1 131 -131 316 287 37 37 chr6 121940237 121940373 -67339181 + Tigger8 DNA MER2_type 529 664 -2 696 263 31 27 chr6 121940851 121941006 -67338548 - MIR SINE MIR -29 233 75 1578 128 79 57 chr6 121941006 121941043 -67338511 - MER46B DNA MER2_type -2495 236 201 1587 182 57 0 chr6 121941043 121941323 -67338231 + AluJo SINE Alu 1 296 -16 1578 128 79 57 chr6 121941323 121941638 -67337916 - MER46B DNA MER2_type -2530 201 1 696 263 31 27 chr6 121941638 121941706 -67337848 - MIR SINE MIR -187 75 9 1321 204 0 0 chr6 121944013 121944234 -67335320 - AluJo SINE Alu -16 296 76 304 282 24 40 chr6 121944316 121944440 -67335114 + L1ME4a LINE L1 5929 6050 -71 237 237 68 0 chr6 121944504 121944563 -67334991 - MIR SINE MIR -3 259 197 229 257 162 0 chr6 121944954 121945028 -67334526 - MIR SINE MIR -73 189 104 2063 162 9 0 chr6 121945217 121945562 -67333992 + MER7A DNA MER2_type 1 346 0 1607 260 93 40 chr6 121946580 121947130 -67332424 - MLT1E LTR MaLR 0 593 15 26 50 0 0 chr6 121948054 121948094 -67331460 + AT_rich Low_complexity Low_complexity 1 40 0 1734 153 108 0 chr6 121948128 121948442 -67331112 - MER7A DNA MER2_type 0 346 1 450 273 25 8 chr6 121949060 121949181 -67330373 - L2 LINE L2 -2 3311 3189 587 221 43 21 chr6 121949230 121949370 -67330184 - MIR SINE MIR -118 144 2 455 250 95 0 chr6 121950865 121950981 -67328573 + MIR SINE MIR 23 149 -113 640 251 119 4 chr6 121951087 121951314 -67328240 + L2 LINE L2 3061 3313 0 527 214 0 10 chr6 121951495 121951593 -67327961 + MER5A DNA MER1_type 9 105 -84 235 378 9 0 chr6 121951638 121951749 -67327805 - L2 LINE L2 -511 2803 2692 587 284 163 8 chr6 121951958 121952215 -67327339 - MER115 DNA AcHobo -355 338 42 255 325 73 16 chr6 121952346 121952469 -67327085 - L2 LINE L2 -626 2688 2559 1687 171 0 52 chr6 121952551 121952861 -67326693 + AluJo SINE Alu 1 294 -18 556 273 46 5 chr6 121952871 121953087 -67326467 - HAL1 LINE L1 -833 1674 1450 471 256 123 0 chr6 121953148 121953343 -67326211 - L1MC4 LINE L1 -17 8025 7807 2376 93 0 3 chr6 121953387 121953687 -67325867 + AluSq SINE Alu 1 299 -14 300 275 66 16 chr6 121953963 121954145 -67325409 - HAL1 LINE L1 -1378 1129 939 1404 272 126 11 chr6 121954145 121954612 -67324942 - LTR33 LTR ERVL 0 521 1 22 0 0 0 chr6 121955819 121955841 -67323713 + AT_rich Low_complexity Low_complexity 1 22 0 42 65 0 0 chr6 121956574 121956651 -67322903 + AT_rich Low_complexity Low_complexity 1 77 0 319 219 0 25 chr6 121957667 121957786 -67321768 + CT-rich Low_complexity Low_complexity 1 116 0 * 341 641 0 0 chr6 121957763 121957933 -67321621 + polypyrimidine Low_complexity Low_complexity 3 172 0 195 146 0 0 chr6 121958553 121958594 -67320960 + (T)n Simple_repeat Simple_repeat 1 41 0 1679 150 86 6 chr6 121959517 121959831 -67319723 + MER44D DNA MER2_type 1 609 0 228 95 95 0 chr6 121959959 121960001 -67319553 + MER94 DNA DNA 10 55 -79 283 316 106 23 chr6 121960047 121960296 -67319258 + L2 LINE L2 2794 3050 -263 1036 147 0 13 chr6 121960298 121960455 -67319099 + AluJb SINE Alu 137 291 -21 282 279 90 33 chr6 121960551 121960673 -67318881 + L2 LINE L2 3184 3312 -1 1942 161 0 0 chr6 121960673 121960964 -67318590 - AluSx SINE Alu -20 292 2 22 0 0 0 chr6 121961107 121961129 -67318425 + AT_rich Low_complexity Low_complexity 1 22 0 219 69 0 0 chr6 121962345 121962374 -67317180 + (TG)n Simple_repeat Simple_repeat 2 30 0 756 114 9 0 chr6 121962872 121962977 -67316577 + U6 snRNA snRNA 1 106 -1 195 42 0 0 chr6 121963369 121963393 -67316161 + (TG)n Simple_repeat Simple_repeat 1 24 0 1513 136 8 4 chr6 121963947 121964189 -67315365 - MER7A DNA MER2_type 0 336 94 1420 135 5 0 chr6 121964189 121964389 -67315165 + AluJb SINE Alu 87 287 -25 189 0 0 0 chr6 121964390 121964411 -67315143 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 476 162 34 77 chr6 121964411 121964528 -67315026 - MER7A DNA MER2_type -236 110 1 229 291 86 0 chr6 121964970 121965087 -67314467 - MLT1J LTR MaLR 0 511 385 1684 183 86 115 chr6 121965195 121965743 -67313811 - MLT1F LTR MaLR -10 532 1 229 210 129 0 chr6 121965798 121965860 -67313694 - MLT1J LTR MaLR -331 180 111 1850 177 10 0 chr6 121966061 121966360 -67313194 - AluJo SINE Alu -8 304 3 2303 107 0 7 chr6 121966796 121967106 -67312448 - AluSg1 SINE Alu -1 308 1 370 237 140 42 chr6 121967552 121967788 -67311766 + L1ME LINE L1 5067 5325 -821 256 291 13 0 chr6 121967910 121967989 -67311565 + L1ME LINE L1 5481 5560 -561 372 254 96 19 chr6 121968114 121968323 -67311231 - HAL1b LINE L1 -435 913 689 23 0 0 0 chr6 121968441 121968464 -67311090 + AT_rich Low_complexity Low_complexity 1 23 0 322 274 73 96 chr6 121968792 121969108 -67310446 + L2 LINE L2 2737 3043 -229 461 290 58 13 chr6 121969135 121969290 -67310264 + MIR SINE MIR 31 192 -70 246 62 0 0 chr6 121969408 121969440 -67310114 + (CA)n Simple_repeat Simple_repeat 1 32 0 335 314 101 47 chr6 121969492 121969661 -67309893 + L2 LINE L2 3088 3265 -7 294 222 0 67 chr6 121970005 121970095 -67309459 + L1ME4a LINE L1 5956 6039 -82 408 320 8 8 chr6 121970229 121970354 -67309200 - L2 LINE L2 0 3313 3189 327 43 0 0 chr6 121970409 121970455 -67309099 - MADE1 DNA Mariner -34 46 1 946 185 145 108 chr6 121970470 121970822 -67308732 + MLT1A1 LTR MaLR 1 365 0 23 33 0 0 chr6 121971177 121971207 -67308347 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr6 121971983 121972018 -67307536 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 121972081 121972109 -67307445 + AT_rich Low_complexity Low_complexity 1 28 0 221 226 36 0 chr6 121972708 121972792 -67306762 + (TA)n Simple_repeat Simple_repeat 1 87 0 3132 110 32 11 chr6 121972813 121973342 -67306212 - L1MA5A LINE L1 0 6297 5758 198 339 157 33 chr6 121973423 121973544 -67306010 - L2 LINE L2 0 3272 3137 6649 70 21 81 chr6 121974369 121977043 -67302511 - SVA Other Other -518 1386 57 189 0 0 0 chr6 121977043 121977064 -67302490 + (GGGAGA)n Simple_repeat Simple_repeat 1 21 0 566 335 97 57 chr6 121977271 121978129 -67301425 - L2 LINE L2 0 3272 2358 2311 95 3 0 chr6 121978129 121978423 -67301131 - AluSp SINE Alu -18 295 1 566 335 97 57 chr6 121978423 121978554 -67301000 - L2 LINE L2 -914 2358 2234 7960 223 50 32 chr6 121978596 121978817 -67300737 - L1M4 LINE L1 -1083 5063 4847 1595 189 9 28 chr6 121978817 121979135 -67300419 - AluJo SINE Alu 0 312 1 7960 223 50 32 chr6 121979135 121979758 -67299796 - L1M4 LINE L1 -1299 4847 4237 201 39 0 0 chr6 121979758 121979784 -67299770 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7960 223 50 32 chr6 121979784 121981636 -67297918 - L1M4 LINE L1 -1909 4237 2318 1611 170 31 50 chr6 121981831 121982149 -67297405 - AluJo SINE Alu 0 312 1 2410 68 7 0 chr6 121982216 121982510 -67297044 + AluY SINE Alu 1 296 -15 196 143 0 41 chr6 121983986 121984035 -67295519 + (TTCTCC)n Simple_repeat Simple_repeat 3 49 0 672 208 33 7 chr6 121984035 121984335 -67295219 + CT-rich Low_complexity Low_complexity 1 308 0 21 0 0 0 chr6 121984465 121984486 -67295068 + AT_rich Low_complexity Low_complexity 1 21 0 1973 130 7 27 chr6 121984656 121984957 -67294597 - AluSx SINE Alu -17 295 1 200 241 35 35 chr6 121985524 121985582 -67293972 + MIR3 SINE MIR 112 169 -39 1670 138 54 25 chr6 121987266 121987542 -67292012 + AluJo SINE Alu 6 289 -23 201 300 20 0 chr6 121987880 121987930 -67291624 + L2 LINE L2 3262 3312 -1 1499 264 67 9 chr6 121988185 121988648 -67290906 - MLT1J LTR MaLR 0 511 22 315 303 169 0 chr6 121989062 121989204 -67290350 - MIR SINE MIR -4 258 93 253 344 92 0 chr6 121989435 121989566 -67289988 - MIR SINE MIR -43 219 77 22 35 0 0 chr6 121989815 121989844 -67289710 + AT_rich Low_complexity Low_complexity 1 29 0 2229 96 0 4 chr6 121990550 121990831 -67288723 - AluSg SINE Alu -30 280 1 1872 89 0 8 chr6 121990889 121991125 -67288429 - AluSp SINE Alu -24 289 56 1206 85 129 5 chr6 121991150 121991351 -67288203 + Tigger4(Zombi) DNA MER2_type 2506 2731 0 429 325 93 35 chr6 121991436 121991781 -67287773 - L2 LINE L2 -63 3209 2845 311 271 224 27 chr6 121992233 121992398 -67287156 + MIR SINE MIR 7 202 -60 1629 181 21 3 chr6 121993336 121993623 -67285931 + AluJo SINE Alu 1 292 -20 1238 195 59 31 chr6 121994972 121995397 -67284157 + L1ME LINE L1 5015 5452 -710 909 202 15 40 chr6 121995400 121995598 -67283956 - MER20 DNA MER1_type -26 193 1 2051 112 0 16 chr6 121995665 121995978 -67283576 - AluSx SINE Alu -4 308 1 887 173 0 0 chr6 121995986 121996125 -67283429 - AluSg/x SINE Alu -17 293 155 1220 148 89 0 chr6 121996235 121996437 -67283117 + AluJo SINE Alu 1 220 -92 242 167 0 0 chr6 121996437 121996479 -67283075 + Alu SINE Alu 86 127 -175 323 241 116 14 chr6 121998069 121998222 -67281332 + MIR SINE MIR 20 184 -62 265 187 99 22 chr6 121998727 121998818 -67280736 - HAL1 LINE L1 -251 2256 2159 1025 161 0 0 chr6 121998828 121998990 -67280564 - FAM SINE Alu -12 163 2 25 31 0 0 chr6 121998995 121999027 -67280527 + AT_rich Low_complexity Low_complexity 1 32 0 1853 213 37 56 chr6 121999029 121999328 -67280226 - HAL1 LINE L1 -495 2012 1728 2261 85 27 0 chr6 121999328 121999621 -67279933 - AluSp SINE Alu -12 301 1 1853 213 37 56 chr6 121999621 121999895 -67279659 - HAL1 LINE L1 -779 1728 1450 1685 48 9 39 chr6 122000021 122000250 -67279304 + AluSc SINE Alu 68 289 -20 381 183 100 21 chr6 122000250 122000351 -67279203 + L1ME LINE L1 5595 5698 -480 931 294 140 44 chr6 122000446 122001845 -67277709 - L1MEd LINE L1 -4641 1669 86 1623 185 176 3 chr6 122001851 122002203 -67277351 + MER47B DNA MER2_type 6 418 0 559 200 117 72 chr6 122003889 122004043 -67275511 + MIR SINE MIR 45 210 -52 2150 76 56 30 chr6 122004043 122004345 -67275209 + AluY SINE Alu 1 310 -1 559 200 117 72 chr6 122004345 122004370 -67275184 + MIR SINE MIR 210 232 -30 297 163 0 0 chr6 122004705 122004754 -67274800 + L2 LINE L2 3263 3311 -2 24 0 0 0 chr6 122004780 122004804 -67274750 + AT_rich Low_complexity Low_complexity 1 24 0 1834 112 19 15 chr6 122005020 122005279 -67274275 + AluSq SINE Alu 1 260 -53 1428 174 64 7 chr6 122005474 122005756 -67273798 + AluJo SINE Alu 1 298 -14 240 59 0 0 chr6 122007532 122007566 -67271988 + (TG)n Simple_repeat Simple_repeat 2 35 0 469 116 0 0 chr6 122007894 122007963 -67271591 - U3 snRNA snRNA -148 69 1 762 126 0 17 chr6 122008754 122008873 -67270681 - AluJb SINE Alu -195 117 1 247 303 11 34 chr6 122008892 122008981 -67270573 - MIR3 SINE MIR -14 194 108 2311 83 0 0 chr6 122009172 122009460 -67270094 + AluY SINE Alu 1 288 -23 29 0 0 0 chr6 122009715 122009744 -67269810 + AT_rich Low_complexity Low_complexity 1 29 0 468 283 58 14 chr6 122011707 122011845 -67267709 - L2 LINE L2 -5 3308 3165 208 0 62 0 chr6 122012104 122012136 -67267418 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 263 299 82 52 chr6 122012289 122012423 -67267131 + MIR SINE MIR 31 168 -94 307 318 46 68 chr6 122013380 122013643 -67265911 + L2 LINE L2 2540 2807 -465 2070 82 50 11 chr6 122013643 122013924 -67265630 - AluSc SINE Alu -17 292 1 307 318 46 68 chr6 122013924 122014206 -67265348 + L2 LINE L2 2807 3078 -194 583 65 0 0 chr6 122014439 122014516 -67265038 + Alu SINE Alu 223 299 -10 2067 144 3 0 chr6 122014828 122015133 -67264421 + AluJo SINE Alu 1 306 -6 24 32 0 0 chr6 122015342 122015373 -67264181 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr6 122017148 122017173 -67262381 + GC_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr6 122017181 122017205 -67262349 + GC_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr6 122018951 122018971 -67260583 + (A)n Simple_repeat Simple_repeat 1 20 0 451 281 10 73 chr6 122020136 122020253 -67259301 + MIR SINE MIR 8 110 -152 1572 53 0 24 chr6 122020253 122020462 -67259092 + L1PA6 LINE L1 5950 6153 -1 451 281 10 73 chr6 122020462 122020536 -67259018 + MIR SINE MIR 110 187 -75 1068 267 66 82 chr6 122021404 122022014 -67257540 - L1MC4a LINE L1 -1892 5916 5317 2076 114 24 0 chr6 122022028 122022318 -67257236 + AluY SINE Alu 1 297 -14 239 245 122 66 chr6 122022452 122022738 -67256816 - L1MC4a LINE L1 -981 5165 4864 26 0 0 0 chr6 122023174 122023200 -67256354 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr6 122023473 122023499 -67256055 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr6 122023516 122023551 -67256003 + AT_rich Low_complexity Low_complexity 1 35 0 4422 147 46 41 chr6 122026306 122027191 -67252363 - L1MC2 LINE L1 -24 6320 5431 221 294 59 59 chr6 122028368 122028487 -67251067 - L2 LINE L2 0 3313 3195 257 286 170 41 chr6 122029078 122029225 -67250329 + MIR SINE MIR 82 247 -15 1606 119 14 18 chr6 122029712 122029989 -67249565 - L1MC1 LINE L1 -335 5998 5723 523 44 0 15 chr6 122029989 122030057 -67249497 - THE1B LTR MaLR 0 364 298 457 297 57 44 chr6 122030568 122030797 -67248757 - L2 LINE L2 -2 3311 3080 957 168 6 19 chr6 122030957 122031118 -67248436 - FRAM SINE Alu -14 162 4 2448 66 0 7 chr6 122031753 122032058 -67247496 + AluY SINE Alu 1 303 -8 196 386 0 50 chr6 122032469 122032570 -67246984 + MIR3 SINE MIR 14 109 -99 1367 153 4 18 chr6 122032586 122032815 -67246739 - AluJo SINE Alu 0 312 87 604 227 0 15 chr6 122032881 122033013 -67246541 + FLAM_A SINE Alu 4 133 0 1624 160 0 59 chr6 122034340 122034646 -67244908 + AluJb SINE Alu 1 288 -24 1516 213 3 3 chr6 122035215 122035497 -67244057 + AluJo SINE Alu 1 282 -30 234 0 0 0 chr6 122035502 122035528 -67244026 + (CA)n Simple_repeat Simple_repeat 2 27 0 27 0 0 0 chr6 122037094 122037121 -67242433 + AT_rich Low_complexity Low_complexity 1 27 0 183 234 0 0 chr6 122037241 122037365 -67242189 + (TA)n Simple_repeat Simple_repeat 1 124 0 2147 120 0 0 chr6 122037454 122037738 -67241816 + AluSx SINE Alu 1 284 -28 1743 150 45 7 chr6 122038663 122038950 -67240604 + AluSx SINE Alu 1 298 -14 353 350 51 38 chr6 122041737 122041974 -67237580 + L1M3d LINE L1 1 240 -5651 4647 167 66 30 chr6 122041976 122042137 -67237417 + L1MB2 LINE L1 4277 4431 -1740 1639 168 62 50 chr6 122042137 122042494 -67237060 + MLT1A1 LTR MaLR 5 365 0 4647 167 66 30 chr6 122042494 122042520 -67237034 + L1MB2 LINE L1 4431 4455 -1716 2229 121 6 35 chr6 122042520 122042867 -67236687 - MER1B DNA MER1_type 0 337 1 4647 167 66 30 chr6 122042867 122043640 -67235914 + L1MB2 LINE L1 4455 5199 -972 1944 107 26 48 chr6 122043640 122043949 -67235605 + AluSc SINE Alu 1 302 -7 4647 167 66 30 chr6 122043949 122044264 -67235290 + L1MB2 LINE L1 5199 5501 -670 1284 205 132 15 chr6 122044264 122044591 -67234963 + MLT1A1 LTR MaLR 1 365 0 4647 167 66 30 chr6 122044591 122044789 -67234765 + L1MB2 LINE L1 5501 5691 -480 2218 107 3 26 chr6 122044789 122045098 -67234456 + AluSx SINE Alu 1 302 -10 4647 167 66 30 chr6 122045098 122045433 -67234121 + L1MB2 LINE L1 5691 6161 -10 678 161 17 0 chr6 122045844 122045962 -67233592 - AluSx SINE Alu -5 307 188 33049 90 9 26 chr6 122045962 122051750 -67227804 + L1PA7 LINE L1 473 6154 0 1493 117 0 0 chr6 122051767 122051964 -67227590 - AluSx SINE Alu -115 197 1 612 176 8 8 chr6 122052093 122052212 -67227342 - FLAM_C SINE Alu -12 131 13 275 261 122 16 chr6 122052450 122052575 -67226979 - MIR SINE MIR -63 145 19 671 171 0 57 chr6 122053575 122053715 -67225839 - FLAM_C SINE Alu -6 137 6 1374 207 17 30 chr6 122053789 122054088 -67225466 + AluJb SINE Alu 1 295 -17 2176 111 7 0 chr6 122054818 122055116 -67224438 - AluSx SINE Alu -12 300 1 1897 126 47 4 chr6 122055539 122055816 -67223738 - AluSx SINE Alu -23 289 1 2286 108 3 3 chr6 122055961 122056268 -67223286 + AluSx SINE Alu 3 309 -3 1815 159 24 10 chr6 122056709 122056998 -67222556 - AluJo SINE Alu -19 293 1 663 206 124 21 chr6 122057056 122057250 -67222304 + MER112 DNA MER1_type 47 260 0 181 324 29 0 chr6 122058451 122058519 -67221035 + MIR SINE MIR 67 136 -126 1134 213 166 3 chr6 122058960 122059256 -67220298 - MER2 DNA MER2_type 0 344 1 418 234 57 69 chr6 122059854 122060029 -67219525 + MER5B DNA MER1_type 1 173 -5 273 306 111 0 chr6 122060312 122060420 -67219134 - MIR SINE MIR -19 243 124 240 246 0 0 chr6 122060442 122060503 -67219051 - MER5B DNA MER1_type -117 61 1 26 30 0 0 chr6 122060766 122060799 -67218755 + AT_rich Low_complexity Low_complexity 1 33 0 1896 148 3 30 chr6 122060805 122061110 -67218444 + AluJo SINE Alu 1 297 -15 2226 91 0 52 chr6 122061958 122062267 -67217287 - AluSx SINE Alu -19 293 1 1837 146 19 16 chr6 122063728 122064036 -67215518 - AluJo SINE Alu -3 309 1 487 251 123 5 chr6 122064145 122064340 -67215214 - L1MB8 LINE L1 -222 5899 5682 1187 250 141 18 chr6 122065699 122066280 -67213274 + L2 LINE L2 2632 3286 -27 415 141 0 77 chr6 122066692 122066770 -67212784 + AluJb SINE Alu 62 133 -179 2070 116 7 7 chr6 122066773 122067092 -67212462 + AluSx SINE Alu 1 319 0 710 252 117 0 chr6 122067811 122068017 -67211537 + MIR SINE MIR 28 257 -5 786 178 28 10 chr6 122068438 122068706 -67210848 - MLT1A2 LTR MaLR 0 390 26 205 286 0 0 chr6 122068707 122068763 -67210791 - MIR SINE MIR -127 135 80 2152 120 0 0 chr6 122069763 122070047 -67209507 - AluSx SINE Alu -26 286 3 1763 183 0 14 chr6 122070049 122070344 -67209210 - AluJb SINE Alu -21 291 1 383 241 43 9 chr6 122071222 122071338 -67208216 + MIR SINE MIR 63 182 -80 1413 223 24 40 chr6 122071559 122071935 -67207619 + MLT1A2 LTR MaLR 1 370 -4 2044 122 3 7 chr6 122072124 122072412 -67207142 - AluSg SINE Alu -19 291 5 1306 202 23 85 chr6 122072518 122072905 -67206649 + MLT1A2 LTR MaLR 1 363 -11 450 119 0 0 chr6 122073120 122073187 -67206367 - L1MB7 LINE L1 -19 6165 6099 788 197 53 0 chr6 122074141 122074293 -67205261 - MER20 DNA MER1_type -4 215 56 272 311 10 19 chr6 122074357 122074460 -67205094 + L1ME2 LINE L1 6061 6162 -2 281 290 103 19 chr6 122074691 122074798 -67204756 - MIR SINE MIR -119 143 28 192 284 189 0 chr6 122075615 122075710 -67203844 + MIR SINE MIR 98 210 -52 3760 110 17 16 chr6 122075968 122076525 -67203029 - L1PA13 LINE L1 0 6163 5603 2266 129 0 0 chr6 122076525 122076835 -67202719 - AluSx SINE Alu -2 310 1 3760 110 17 16 chr6 122076835 122076852 -67202702 - L1PA13 LINE L1 -560 5603 5588 243 211 28 56 chr6 122077339 122077410 -67202144 - MIR SINE MIR -9 253 185 281 238 50 40 chr6 122079321 122079422 -67200132 - MIR SINE MIR -109 153 52 417 223 58 25 chr6 122082711 122082832 -67196722 + MER5B DNA MER1_type 5 129 -49 30 0 0 0 chr6 122082832 122082862 -67196692 + AT_rich Low_complexity Low_complexity 1 30 0 1603 132 30 68 chr6 122082898 122083218 -67196336 - AluSx SINE Alu 0 309 1 245 238 16 0 chr6 122083218 122083281 -67196273 + MER5B DNA MER1_type 114 177 -1 1573 245 69 9 chr6 122084916 122085352 -67194202 - LTR37B LTR ERV1 -1 467 6 243 0 0 0 chr6 122085647 122085674 -67193880 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 749 137 130 8 chr6 122085687 122085818 -67193736 - AluJo SINE Alu -73 239 93 2774 141 33 68 chr6 122085915 122086484 -67193070 + LTR9 LTR ERV1 1 549 -63 993 114 0 0 chr6 122086487 122086619 -67192935 - AluSg/x SINE Alu -25 287 156 2891 118 7 5 chr6 122087062 122087485 -67192069 - MSTA LTR MaLR -4 424 1 897 131 0 29 chr6 122087639 122087776 -67191778 + FLAM_C SINE Alu 1 133 0 189 0 0 0 chr6 122088140 122088161 -67191393 + (A)n Simple_repeat Simple_repeat 1 21 0 44 35 0 0 chr6 122088173 122088231 -67191323 + AT_rich Low_complexity Low_complexity 1 58 0 517 150 23 35 chr6 122088269 122088402 -67191152 + AluJb SINE Alu 1 193 -119 23 33 0 0 chr6 122088725 122088755 -67190799 + AT_rich Low_complexity Low_complexity 1 30 0 2282 80 10 26 chr6 122088761 122089073 -67190481 + AluY SINE Alu 1 307 -4 310 248 57 67 chr6 122089299 122089404 -67190150 - MER5A DNA MER1_type -10 179 76 194 206 0 0 chr6 122089603 122089637 -67189917 - L3 LINE CR1 -134 1443 1410 1984 138 3 0 chr6 122090205 122090514 -67189040 + AluSx SINE Alu 1 310 0 192 77 0 0 chr6 122090644 122090670 -67188884 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 689 257 123 48 chr6 122090778 122091018 -67188536 + L1M4 LINE L1 2722 2943 -3203 2281 115 0 3 chr6 122091018 122091323 -67188231 + AluSx SINE Alu 1 304 -8 689 257 123 48 chr6 122091323 122091619 -67187935 + L1M4 LINE L1 2943 3298 -2848 981 279 12 12 chr6 122091646 122091897 -67187657 + MIR SINE MIR 7 257 -5 2308 230 29 63 chr6 122091903 122092601 -67186953 + L1P LINE L1 3289 3957 -2189 2270 89 3 0 chr6 122092601 122092907 -67186647 + AluSx SINE Alu 2 308 0 2308 230 29 63 chr6 122092907 122093157 -67186397 + L1P LINE L1 3957 4214 -1932 229 333 11 11 chr6 122093156 122093243 -67186311 + L1M4 LINE L1 4000 4086 -2060 * 6730 78 5 34 chr6 122093261 122093933 -67185621 + L1PA14 LINE L1 4219 4909 -1252 2654 46 0 0 chr6 122093933 122094240 -67185314 + AluY SINE Alu 1 307 -4 6730 78 5 34 chr6 122094240 122094692 -67184862 + L1PA14 LINE L1 4909 5373 -788 2438 81 0 3 chr6 122094692 122094988 -67184566 + AluSp SINE Alu 1 295 -18 6730 78 5 34 chr6 122094988 122095848 -67183706 + L1PA14 LINE L1 5373 6161 0 2510 63 3 0 chr6 122095862 122096164 -67183390 + AluY SINE Alu 1 303 -8 435 276 207 21 chr6 122096164 122096497 -67183057 + L1M4 LINE L1 3907 4301 -1845 21 57 0 0 chr6 122096517 122096552 -67183002 + AT_rich Low_complexity Low_complexity 1 35 0 1699 164 0 63 chr6 122096613 122096931 -67182623 - AluJb SINE Alu -14 298 1 1692 166 3 30 chr6 122096974 122097275 -67182279 + AluJb SINE Alu 1 293 -19 536 260 132 4 chr6 122097276 122097526 -67182028 + L1M4 LINE L1 4710 4991 -1155 743 194 35 41 chr6 122097612 122097782 -67181772 + L1PA16 LINE L1 5998 6166 0 22 0 0 0 chr6 122099035 122099057 -67180497 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 122099188 122099210 -67180344 + AT_rich Low_complexity Low_complexity 1 22 0 319 266 83 9 chr6 122099381 122099490 -67180064 + MIR SINE MIR 90 206 -56 207 285 70 57 chr6 122099483 122099641 -67179913 + MIR SINE MIR 52 211 -51 * 2074 139 0 0 chr6 122100022 122100316 -67179238 - AluSx SINE Alu -18 294 1 234 360 20 27 chr6 122101096 122101246 -67178308 + L2 LINE L2 2726 2874 -440 556 275 0 35 chr6 122101248 122101419 -67178135 + L2 LINE L2 3148 3312 -1 1990 67 0 0 chr6 122102284 122102522 -67177032 - AluSx SINE Alu -74 238 1 180 245 0 0 chr6 122102808 122102861 -67176693 + GA-rich Low_complexity Low_complexity 4 56 0 840 176 0 36 chr6 122104321 122104486 -67175068 + AluSg/x SINE Alu 135 293 -17 1198 120 0 0 chr6 122106411 122106578 -67172976 + AluSg/x SINE Alu 142 308 -2 643 225 44 4 chr6 122106661 122106851 -67172703 + L1MD2 LINE L1 6198 6349 -10 1282 171 35 42 chr6 122106851 122107137 -67172417 + L1ME2 LINE L1 5879 6162 -2 391 259 88 0 chr6 122107918 122108065 -67171489 - MIR SINE MIR -19 243 84 21 0 0 0 chr6 122108254 122108275 -67171279 + AT_rich Low_complexity Low_complexity 1 21 0 288 308 34 14 chr6 122108587 122108733 -67170821 + L2 LINE L2 2154 2302 -1012 2023 90 0 102 chr6 122108776 122109098 -67170456 + AluSx SINE Alu 1 289 -23 31 0 0 0 chr6 122109098 122109129 -67170425 + AT_rich Low_complexity Low_complexity 1 31 0 2350 102 0 10 chr6 122111500 122111805 -67167749 + AluSq SINE Alu 1 302 -11 300 91 0 0 chr6 122112567 122112611 -67166943 + (CA)n Simple_repeat Simple_repeat 1 44 0 241 328 30 5 chr6 122112708 122112880 -67166674 + L1ME4a LINE L1 5723 5823 -298 268 194 65 93 chr6 122113078 122113217 -67166337 + L1ME4a LINE L1 5987 6121 0 1185 103 6 0 chr6 122116091 122116256 -67163298 - L1M1 LINE L1 -573 5732 5567 1521 145 52 38 chr6 122116285 122116574 -67162980 - AluJo SINE Alu -19 293 1 2445 89 0 0 chr6 122116924 122117228 -67162326 + AluSg SINE Alu 1 304 -6 2093 137 0 0 chr6 122117677 122117970 -67161584 - AluSq SINE Alu -20 293 1 1361 165 52 16 chr6 122117992 122118241 -67161313 - AluJo SINE Alu -15 297 40 257 300 75 0 chr6 122118325 122118405 -67161149 - L2 LINE L2 -10 3262 3177 463 218 204 0 chr6 122118554 122118696 -67160858 + MER5A DNA MER1_type 19 189 0 225 94 0 0 chr6 122119281 122119313 -67160241 + (A)n Simple_repeat Simple_repeat 1 32 0 180 0 0 0 chr6 122119558 122119578 -67159976 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 242 203 34 0 chr6 122119598 122119657 -67159897 + A-rich Low_complexity Low_complexity 3 63 0 240 248 115 62 chr6 122119883 122119974 -67159580 + L2 LINE L2 3127 3227 -45 1811 162 3 19 chr6 122119974 122120283 -67159271 + AluJo SINE Alu 1 304 -8 240 248 115 62 chr6 122120283 122120304 -67159250 + L2 LINE L2 3227 3245 -27 299 236 45 22 chr6 122120815 122120904 -67158650 + L3 LINE CR1 1478 1568 -9 286 169 0 39 chr6 122121166 122121243 -67158311 + CT-rich Low_complexity Low_complexity 2 75 0 242 155 35 35 chr6 122122051 122122109 -67157445 + CT-rich Low_complexity Low_complexity 2 59 0 685 179 17 0 chr6 122123374 122123491 -67156063 + FLAM_C SINE Alu 24 142 -1 1730 165 0 0 chr6 122123583 122123844 -67155710 - AluSx SINE Alu -23 289 29 1025 193 277 16 chr6 122124564 122125038 -67154516 + L1MC4 LINE L1 7143 7680 -128 2016 137 3 3 chr6 122125042 122125341 -67154213 + AluSx SINE Alu 1 299 -13 2397 81 13 10 chr6 122125344 122125653 -67153901 + AluSg SINE Alu 1 310 0 316 343 41 7 chr6 122125909 122126055 -67153499 - MIR3 SINE MIR -24 184 34 425 341 88 14 chr6 122127549 122127766 -67151788 + MIR SINE MIR 4 236 -26 355 342 9 0 chr6 122127945 122128056 -67151498 - MIR SINE MIR -72 190 79 251 113 19 0 chr6 122128465 122128518 -67151036 + GA-rich Low_complexity Low_complexity 2 55 0 456 194 40 23 chr6 122128572 122128683 -67150871 + MIR SINE MIR 12 115 -93 255 235 101 25 chr6 122128688 122128807 -67150747 + L1ME4a LINE L1 5991 6118 -3 28 48 0 0 chr6 122128853 122128895 -67150659 + AT_rich Low_complexity Low_complexity 1 42 0 683 236 177 20 chr6 122129404 122129607 -67149947 - MER46C DNA MER2_type 0 338 104 22 0 0 0 chr6 122129791 122129813 -67149741 + AT_rich Low_complexity Low_complexity 1 22 0 566 271 0 69 chr6 122131259 122131447 -67148107 - AluSg/x SINE Alu -9 300 126 26741 85 5 1 chr6 122131572 122135190 -67144364 + L1P LINE L1 1382 5015 -1131 2613 62 0 0 chr6 122135190 122135499 -67144055 + AluY SINE Alu 1 309 -2 21 0 0 0 chr6 122135751 122135772 -67143782 + AT_rich Low_complexity Low_complexity 1 21 0 225 177 0 81 chr6 122136719 122136781 -67142773 - L2 LINE L2 -17 3296 3240 307 319 51 57 chr6 122137091 122137248 -67142306 + L2 LINE L2 3080 3235 -37 412 348 62 0 chr6 122137860 122138038 -67141516 + MIR3 SINE MIR 14 202 -6 296 298 32 16 chr6 122138155 122138279 -67141275 - L2 LINE L2 -167 3105 2980 721 128 137 0 chr6 122139311 122139428 -67140126 + FLAM_C SINE Alu 1 133 0 1649 128 145 0 chr6 122139486 122139735 -67139819 - AluSx SINE Alu -17 285 1 2247 108 3 0 chr6 122140010 122140305 -67139249 - AluSx SINE Alu -16 296 1 2403 80 0 0 chr6 122140576 122140893 -67138661 - AluY SINE Alu 0 317 1 1005 158 119 40 chr6 122141147 122141207 -67138347 + MER58A DNA MER1_type 4 58 -2362 2212 153 34 6 chr6 122141207 122141561 -67137993 - MLT1A1 LTR MaLR -1 364 1 1005 158 119 40 chr6 122141561 122141702 -67137852 + MER58A DNA MER1_type 58 221 -3 937 214 9 42 chr6 122141712 122141927 -67137627 + MER3 DNA MER1_type 1 208 -1 253 229 65 149 chr6 122141988 122142076 -67137478 - L2 LINE L2 -2 3270 3176 711 82 31 0 chr6 122142076 122142174 -67137380 - L1MB3 LINE L1 -11 6172 6072 253 229 65 149 chr6 122142174 122142299 -67137255 - L2 LINE L2 -96 3176 3075 213 288 50 38 chr6 122143389 122143469 -67136085 - L2 LINE L2 -3 3310 3230 3329 214 28 5 chr6 122143522 122144158 -67135396 + MER82 DNA MER2_type 3 653 0 2336 70 0 27 chr6 122144182 122144482 -67135072 + AluSc SINE Alu 1 292 -17 1949 178 31 6 chr6 122144502 122144856 -67134698 - MLT1A1 LTR MaLR 0 365 3 284 259 241 37 chr6 122144915 122145077 -67134477 - L2 LINE L2 -926 2388 2194 2334 91 0 3 chr6 122145688 122145985 -67133569 - AluSx SINE Alu -16 296 1 1836 166 3 16 chr6 122146077 122146391 -67133163 + AluJo SINE Alu 1 310 -2 349 328 41 0 chr6 122146405 122146527 -67133027 + MIR3 SINE MIR 41 167 -41 5524 138 36 24 chr6 122146534 122147512 -67132042 - L1MA5 LINE L1 -6 6294 5305 374 0 22 0 chr6 122147512 122147558 -67131996 + (TG)n Simple_repeat Simple_repeat 2 48 0 14943 193 21 21 chr6 122147558 122149367 -67130187 - L1 LINE L1 -988 5860 4053 2386 87 3 0 chr6 122149367 122149666 -67129888 - AluSp SINE Alu -13 300 1 14943 193 21 21 chr6 122149666 122150047 -67129507 - L1 LINE L1 -2795 4053 3674 2168 132 3 0 chr6 122150047 122150358 -67129196 - AluSx SINE Alu 0 312 1 14943 193 21 21 chr6 122150358 122152127 -67127427 - L1 LINE L1 -3174 3674 1859 1846 184 0 10 chr6 122152127 122152432 -67127122 - AluJo SINE Alu -10 302 1 14943 193 21 21 chr6 122152432 122152993 -67126561 - L1 LINE L1 -4989 1859 1300 314 125 0 56 chr6 122153129 122153188 -67126366 - L1MB4 LINE L1 -2 6178 6122 1129 212 5 14 chr6 122153188 122153400 -67126154 - MER6B DNA MER2_type 0 210 1 314 125 0 56 chr6 122153400 122153412 -67126142 - L1MB4 LINE L1 -58 6122 6111 586 166 4 90 chr6 122153415 122153513 -67126041 + L1M2b LINE L1 1924 2019 -5190 2243 109 3 0 chr6 122153513 122153807 -67125747 + AluSp SINE Alu 3 297 -16 586 166 4 90 chr6 122153807 122153864 -67125690 + L1M2b LINE L1 2019 2079 -5130 4375 171 37 36 chr6 122153864 122154344 -67125210 - L1MB2 LINE L1 -71 6100 5622 180 0 0 0 chr6 122154344 122154364 -67125190 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 4375 171 37 36 chr6 122154364 122154726 -67124828 - L1MB2 LINE L1 -549 5622 5262 1913 150 0 10 chr6 122154726 122155019 -67124535 - AluJb SINE Alu -22 290 1 4375 171 37 36 chr6 122155019 122155699 -67123855 - L1MB2 LINE L1 -909 5262 4581 187 257 55 46 chr6 122156844 122156953 -67122601 - L2 LINE L2 -222 3050 2941 191 286 130 0 chr6 122157192 122157269 -67122285 - L2 LINE L2 -644 2670 2584 309 51 0 0 chr6 122158026 122158065 -67121489 + (CA)n Simple_repeat Simple_repeat 1 39 0 1746 116 106 44 chr6 122158483 122158630 -67120924 - AluSx SINE Alu -1 311 174 2411 81 3 0 chr6 122158630 122158925 -67120629 - AluY SINE Alu -15 296 1 1746 116 106 44 chr6 122158925 122159070 -67120484 - AluSx SINE Alu -138 174 1 2357 91 0 0 chr6 122159248 122159544 -67120010 + AluY SINE Alu 1 296 -15 362 305 183 10 chr6 122160256 122160551 -67119003 - L2 LINE L2 0 3313 2968 2577 66 0 0 chr6 122160708 122161013 -67118541 + AluY SINE Alu 1 305 -6 21 36 0 0 chr6 122161077 122161105 -67118449 + AT_rich Low_complexity Low_complexity 1 28 0 1648 173 20 20 chr6 122161388 122161688 -67117866 - AluJo SINE Alu -12 300 1 1915 106 99 3 chr6 122161756 122162039 -67117515 - AluSx SINE Alu -2 310 1 267 269 157 19 chr6 122162316 122162424 -67117130 - MIR SINE MIR -70 138 16 25 90 0 0 chr6 122162447 122162514 -67117040 + AT_rich Low_complexity Low_complexity 1 67 0 2357 76 3 0 chr6 122162996 122163287 -67116267 - AluSp SINE Alu -17 296 5 7411 53 17 0 chr6 122163851 122165004 -67114550 + L1PA7 LINE L1 4983 6150 -4 362 284 105 0 chr6 122165093 122165188 -67114366 + MIR SINE MIR 29 133 -129 820 135 0 30 chr6 122165193 122165326 -67114228 - FLAM_C SINE Alu -14 129 1 2867 3 0 7 chr6 122165539 122165849 -67113705 - AluYa5 SINE Alu -3 308 1 1664 167 7 31 chr6 122166008 122166302 -67113252 + AluJb SINE Alu 1 287 -25 2269 110 3 0 chr6 122166310 122166619 -67112935 + AluSx SINE Alu 1 310 -2 376 301 45 19 chr6 122167173 122167329 -67112225 - L3 LINE CR1 -218 1359 1200 * 554 215 147 42 chr6 122167317 122167508 -67112046 + MIR SINE MIR 51 261 -1 511 262 289 27 chr6 122167536 122167937 -67111617 - L3 LINE CR1 -369 1208 703 340 300 8 25 chr6 122168076 122168196 -67111358 - MLT1K LTR MaLR -17 571 454 2125 124 0 34 chr6 122168544 122168867 -67110687 + AluSx SINE Alu 1 312 0 449 219 45 138 chr6 122168939 122169163 -67110391 - MER58 DNA MER1_type 0 2420 13 1980 92 3 44 chr6 122169166 122169480 -67110074 - AluSx SINE Alu 0 302 1 1020 196 37 0 chr6 122169727 122169916 -67109638 - MER58A DNA MER1_type -25 199 4 1589 128 128 4 chr6 122170051 122170331 -67109223 - AluSg SINE Alu 0 311 1 213 39 0 0 chr6 122170500 122170526 -67109028 + (CA)n Simple_repeat Simple_repeat 2 27 0 608 207 240 0 chr6 122171358 122171508 -67108046 - MER5A DNA MER1_type 0 189 4 2891 228 72 83 chr6 122171715 122172904 -67106650 - HAL1b LINE L1 -2 1346 171 361 158 13 40 chr6 122172904 122172980 -67106574 + MIR SINE MIR 164 237 -25 2384 89 0 10 chr6 122173292 122173595 -67105959 - AluY SINE Alu -8 303 4 674 151 28 22 chr6 122174414 122174593 -67104961 + GA-rich Low_complexity Low_complexity 1 180 0 2228 112 7 0 chr6 122174623 122174926 -67104628 + AluSc SINE Alu 1 305 -4 546 179 35 23 chr6 122174926 122175099 -67104455 + GA-rich Low_complexity Low_complexity 1 175 0 900 275 51 55 chr6 122175102 122175535 -67104019 - MLT1K LTR MaLR -61 527 97 339 211 45 125 chr6 122175883 122176023 -67103531 - MIR SINE MIR -65 143 22 779 198 4 0 chr6 122176159 122176418 -67103136 + (TGGA)n Simple_repeat Simple_repeat 1 260 0 855 192 0 0 chr6 122176457 122176634 -67102920 + (TGGA)n Simple_repeat Simple_repeat 4 180 0 668 232 6 0 chr6 122176647 122176824 -67102730 + (TGGA)n Simple_repeat Simple_repeat 2 179 0 246 156 0 0 chr6 122176856 122176901 -67102653 + (TGGA)n Simple_repeat Simple_repeat 4 48 0 644 255 144 109 chr6 122179987 122180466 -67099088 - L2 LINE L2 -5 3308 2790 414 267 67 33 chr6 122180891 122181041 -67098513 - MIR3 SINE MIR -17 191 37 367 252 93 28 chr6 122181376 122181483 -67098071 - L2 LINE L2 0 3313 3200 381 329 50 77 chr6 122181769 122182067 -67097487 - L2 LINE L2 -13 3259 2970 868 234 6 0 chr6 122182082 122182249 -67097305 + MER45A DNA AcHobo 2 169 -9 1306 189 175 7 chr6 122182440 122182731 -67096823 + MER58B DNA MER1_type 1 340 -1 465 228 124 14 chr6 122182776 122182921 -67096633 + MER103 DNA DNA 5 165 -1 186 326 0 0 chr6 122183017 122183066 -67096488 - L2 LINE L2 -563 2751 2703 340 270 0 50 chr6 122184354 122184454 -67095100 - MER5B DNA MER1_type -83 95 1 793 263 124 42 chr6 122184541 122184994 -67094560 + L2 LINE L2 2807 3296 -17 571 188 11 6 chr6 122185132 122185313 -67094241 + CT-rich Low_complexity Low_complexity 1 182 0 760 233 66 35 chr6 122185323 122185551 -67094003 - MER102a DNA MER1_type -25 305 71 969 205 71 8 chr6 122185705 122185944 -67093610 + MER112 DNA MER1_type 2 255 -1 2243 100 10 0 chr6 122186255 122186555 -67092999 - AluSx SINE Alu -9 303 1 2091 121 0 0 chr6 122187264 122187544 -67092010 + AluSx SINE Alu 1 280 -32 205 240 20 20 chr6 122187625 122187675 -67091879 - L2 LINE L2 -4 3268 3219 1098 119 6 12 chr6 122187811 122187995 -67091559 - AluSq SINE Alu 0 313 134 2142 117 0 13 chr6 122187996 122188296 -67091258 - AluSp SINE Alu -17 296 1 227 340 103 0 chr6 122189086 122189183 -67090371 + MIR SINE MIR 70 176 -86 2105 136 7 0 chr6 122189742 122190044 -67089510 - AluJo SINE Alu -8 304 1 2150 101 56 0 chr6 122190498 122190784 -67088770 + AluSx SINE Alu 1 302 -10 189 74 0 0 chr6 122191157 122191184 -67088370 + (CA)n Simple_repeat Simple_repeat 2 28 0 2529 84 0 0 chr6 122191236 122191544 -67088010 + AluSc SINE Alu 2 309 0 362 242 31 124 chr6 122191839 122192033 -67087521 + L1ME3A LINE L1 5945 6120 -50 523 154 0 2 chr6 122192403 122192650 -67086904 + AluSx SINE Alu 4 310 0 286 194 0 42 chr6 122193066 122193138 -67086416 + CT-rich Low_complexity Low_complexity 6 74 0 2261 123 3 0 chr6 122193411 122193721 -67085833 - AluSx SINE Alu -1 311 1 825 250 9 18 chr6 122194250 122194478 -67085076 + L1MC4 LINE L1 7691 7916 -126 231 125 0 0 chr6 122194486 122194526 -67085028 + (CA)n Simple_repeat Simple_repeat 1 40 0 2373 226 123 82 chr6 122194563 122195101 -67084453 + HAL1 LINE L1 264 779 -1728 2488 70 0 0 chr6 122195101 122195402 -67084152 - AluY SINE Alu -10 301 1 2373 226 123 82 chr6 122195402 122195760 -67083794 + HAL1 LINE L1 779 1121 -1386 2122 140 3 0 chr6 122195760 122196060 -67083494 - AluSp SINE Alu -12 301 1 2373 226 123 82 chr6 122196060 122196318 -67083236 + HAL1 LINE L1 1121 1466 -1041 1752 234 111 27 chr6 122196321 122197035 -67082519 + HAL1 LINE L1 1649 2422 -85 198 171 12 24 chr6 122197078 122197160 -67082394 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr6 122197267 122197288 -67082266 + AT_rich Low_complexity Low_complexity 1 21 0 1706 214 64 31 chr6 122197969 122198422 -67081132 + L1MC1 LINE L1 3840 4307 -1839 2443 219 12 2 chr6 122198424 122198982 -67080572 + L1MC1 LINE L1 4357 4920 -1226 7123 140 17 18 chr6 122199466 122200232 -67079322 + L1MC1 LINE L1 4906 5663 -670 2464 70 0 10 chr6 122200232 122200544 -67079010 + AluY SINE Alu 1 309 -2 7123 140 17 18 chr6 122200544 122201210 -67078344 + L1MC1 LINE L1 5663 6328 -5 183 42 0 0 chr6 122202560 122202584 -67076970 - MER5A DNA MER1_type -66 123 100 22 88 0 0 chr6 122202824 122202881 -67076673 + AT_rich Low_complexity Low_complexity 1 57 0 272 281 22 34 chr6 122203893 122203982 -67075572 - MIR SINE MIR -19 243 156 22 0 0 0 chr6 122203987 122204009 -67075545 + AT_rich Low_complexity Low_complexity 1 22 0 788 131 37 0 chr6 122204010 122204117 -67075437 - FLAM_C SINE Alu -25 118 8 222 172 0 198 chr6 122204814 122204930 -67074624 + L2 LINE L2 3019 3111 -161 770 246 70 5 chr6 122205872 122206071 -67073483 + MIR SINE MIR 13 224 -38 1108 46 0 0 chr6 122206241 122206372 -67073182 - L1PA6 LINE L1 -1 6153 6023 213 253 101 13 chr6 122206758 122206837 -67072717 - L2 LINE L2 -6 3307 3222 356 236 109 63 chr6 122207623 122207797 -67071757 + MIR SINE MIR 81 262 0 241 200 22 0 chr6 122208233 122208278 -67071276 - L2 LINE L2 -15 3298 3253 427 236 67 93 chr6 122209698 122209923 -67069631 - MIR SINE MIR -1 261 43 583 239 55 47 chr6 122211356 122211611 -67067943 - MLT1L LTR MaLR -336 279 23 246 271 45 73 chr6 122211826 122212003 -67067551 + MER5B DNA MER1_type 3 174 -4 408 305 85 20 chr6 122212471 122212671 -67066883 - MIR SINE MIR -2 260 48 322 78 78 0 chr6 122212680 122212731 -67066823 - MLT2A1 LTR ERVL 0 444 390 303 292 0 22 chr6 122212749 122212838 -67066716 + L1MC4 LINE L1 6615 6701 -1341 392 221 9 0 chr6 122212841 122212954 -67066600 + (TA)n Simple_repeat Simple_repeat 1 114 0 232 222 22 22 chr6 122212983 122213073 -67066481 + L1MC4 LINE L1 6614 6703 -1339 390 162 0 0 chr6 122213075 122213149 -67066405 + (TA)n Simple_repeat Simple_repeat 2 75 0 3387 52 0 2 chr6 122213155 122213560 -67065994 - MLT2A1 LTR ERVL -40 404 1 260 293 138 0 chr6 122214099 122214215 -67065339 - MIR SINE MIR -50 212 81 285 349 64 0 chr6 122214228 122214337 -67065217 + MIR3 SINE MIR 81 196 -12 2611 55 0 0 chr6 122215164 122215472 -67064082 + AluY SINE Alu 1 308 -3 1163 143 16 78 chr6 122215573 122215818 -67063736 + L1MD2 LINE L1 6120 6349 -10 363 304 22 7 chr6 122218160 122218295 -67061259 + CT-rich Low_complexity Low_complexity 3 139 0 4004 175 52 12 chr6 122218634 122219381 -67060173 - L1MB5 LINE L1 -8 6166 5390 958 182 6 0 chr6 122219381 122219540 -67060014 - FRAM SINE Alu -17 159 1 2027 178 66 11 chr6 122219541 122220013 -67059541 - L1MB5 LINE L1 -749 5397 4900 252 273 0 13 chr6 122221227 122221304 -67058250 + L1MC/D LINE L1 5478 5553 -689 941 109 141 33 chr6 122221734 122221866 -67057688 - L1PB3 LINE L1 0 6154 5995 2457 35 7 7 chr6 122221866 122222156 -67057398 - AluY SINE Alu -8 303 14 941 109 141 33 chr6 122222156 122222207 -67057347 - L1PB3 LINE L1 -159 5995 5951 1165 291 122 32 chr6 122222598 122223100 -67056454 - LTR67 LTR ERVL -9 548 2 858 255 128 65 chr6 122223165 122223335 -67056219 + MLT1L LTR MaLR 99 257 -358 2355 55 11 0 chr6 122223335 122223610 -67055944 + AluY SINE Alu 19 296 -15 858 255 128 65 chr6 122223610 122223914 -67055640 + MLT1L LTR MaLR 257 603 -12 1909 162 0 7 chr6 122225062 122225364 -67054190 - AluJo SINE Alu -12 300 1 1947 81 123 4 chr6 122225737 122225998 -67053556 - AluSc SINE Alu -7 292 1 328 226 58 29 chr6 122226021 122226158 -67053396 - L1MC5 LINE L1 -44 7917 7777 2120 117 3 0 chr6 122226191 122226473 -67053081 + AluSx SINE Alu 6 288 -24 2238 101 0 0 chr6 122226480 122226767 -67052787 + AluSg SINE Alu 1 287 -23 3110 221 48 38 chr6 122226788 122228167 -67051387 - L1ME2 LINE L1 -14 6219 4822 2367 111 119 16 chr6 122228204 122228592 -67050962 - MSTA LTR MaLR 0 428 1 1929 175 111 43 chr6 122228592 122229052 -67050502 - MLT1D LTR MaLR -10 495 1 243 209 45 0 chr6 122229063 122229130 -67050424 - L1ME2 LINE L1 -1438 4777 4708 2709 216 78 70 chr6 122229132 122229239 -67050315 - L1ME2 LINE L1 -1581 4634 4529 2461 80 0 3 chr6 122229239 122229551 -67050003 - AluY SINE Alu 0 311 1 2709 216 78 70 chr6 122229551 122230465 -67049089 - L1ME2 LINE L1 -1686 4529 3604 235 213 28 135 chr6 122230473 122230537 -67049017 - L1ME2 LINE L1 -4810 1586 1543 2127 126 0 0 chr6 122230537 122230822 -67048732 - AluSx SINE Alu -26 286 2 235 213 28 135 chr6 122230822 122230898 -67048656 - L1ME2 LINE L1 -4853 1543 1461 22 35 0 0 chr6 122231141 122231170 -67048384 + AT_rich Low_complexity Low_complexity 1 29 0 418 104 30 0 chr6 122231398 122231465 -67048089 + MADE1 DNA Mariner 1 69 -11 2151 92 7 10 chr6 122231674 122231977 -67047577 - AluY SINE Alu -9 302 1 2351 87 10 0 chr6 122233404 122233703 -67045851 - AluSx SINE Alu -10 302 1 2073 143 0 0 chr6 122234173 122234473 -67045081 + AluSx SINE Alu 2 301 -11 1473 292 45 41 chr6 122234701 122235235 -67044319 + MLT1G LTR MaLR 52 587 -3 410 296 79 75 chr6 122235804 122236308 -67043246 + L1MC4a LINE L1 2260 2765 -3381 23 0 0 0 chr6 122236702 122236725 -67042829 + AT_rich Low_complexity Low_complexity 1 23 0 321 278 101 52 chr6 122236731 122237137 -67042417 + L1MC4a LINE L1 3332 3757 -2389 * 478 279 92 49 chr6 122237136 122237473 -67042081 + L1MC4a LINE L1 4063 4439 -1707 659 221 0 15 chr6 122237473 122237604 -67041950 - FLAM_A SINE Alu -1 132 4 478 279 92 49 chr6 122237604 122237878 -67041676 + L1MC4a LINE L1 4439 4700 -1446 2460 194 65 46 chr6 122237888 122238500 -67041054 - MLT1E3 LTR MaLR 0 624 1 1629 126 4 42 chr6 122238587 122238850 -67040704 + AluJo SINE Alu 47 299 -13 1467 124 0 23 chr6 122238937 122239179 -67040375 + AluSg/x SINE Alu 73 309 0 21 0 0 0 chr6 122239333 122239354 -67040200 + AT_rich Low_complexity Low_complexity 1 21 0 354 268 94 14 chr6 122239359 122239497 -67040057 - MLT1J2 LTR MaLR -21 429 281 1238 144 53 49 chr6 122239542 122239714 -67039840 + MER33 DNA MER1_type 61 236 -2349 2222 118 3 0 chr6 122239714 122240018 -67039536 - AluSx SINE Alu -7 305 1 1238 144 53 49 chr6 122240018 122240108 -67039446 + MER33 DNA MER1_type 236 324 0 663 215 14 7 chr6 122240177 122240321 -67039233 - MLT1J1 LTR MaLR -301 145 1 180 176 0 0 chr6 122240385 122240419 -67039135 + GA-rich Low_complexity Low_complexity 4 37 0 35 54 0 0 chr6 122240433 122240489 -67039065 + AT_rich Low_complexity Low_complexity 1 56 0 864 282 157 33 chr6 122240682 122241256 -67038298 + L1MC4a LINE L1 5260 5904 -1904 2309 109 0 0 chr6 122241354 122241657 -67037897 + AluSx SINE Alu 1 303 -9 2349 196 40 0 chr6 122241660 122242135 -67037419 - L1M4 LINE L1 -1778 4368 3875 497 267 76 43 chr6 122242250 122242460 -67037094 + MIR SINE MIR 20 236 -26 287 227 126 8 chr6 122243030 122243149 -67036405 + MER103 DNA DNA 3 135 -31 21 0 0 0 chr6 122243149 122243170 -67036384 + AT_rich Low_complexity Low_complexity 1 21 0 540 111 0 0 chr6 122243374 122243455 -67036099 + (TA)n Simple_repeat Simple_repeat 2 82 0 201 94 125 0 chr6 122243705 122243737 -67035817 - MIR SINE MIR -102 160 125 306 258 145 24 chr6 122243755 122243879 -67035675 - MIR SINE MIR -48 214 76 2166 97 10 0 chr6 122244863 122245163 -67034391 + AluSx SINE Alu 1 303 -9 2275 97 0 3 chr6 122246465 122246775 -67032779 + AluSc SINE Alu 1 309 0 371 232 36 129 chr6 122247070 122247264 -67032290 + L1ME3A LINE L1 5945 6120 -50 499 154 0 3 chr6 122247634 122247881 -67031673 + AluSx SINE Alu 4 312 0 955 149 5 64 chr6 122248440 122248628 -67030926 + MLT1D LTR MaLR 324 500 -5 2241 77 0 0 chr6 122248642 122248955 -67030599 - AluSq SINE Alu 0 313 1 257 130 120 87 chr6 122249656 122249748 -67029806 - L1MC5 LINE L1 -30 7931 7837 2291 77 0 3 chr6 122249749 122250047 -67029507 - AluSg SINE Alu -13 297 1 320 315 0 43 chr6 122250285 122250377 -67029177 - MIR SINE MIR -85 123 36 527 253 53 13 chr6 122250800 122250950 -67028604 + MER5A DNA MER1_type 3 158 -31 299 298 16 0 chr6 122250988 122251112 -67028442 + (CACTA)n Simple_repeat Simple_repeat 3 128 0 1859 220 27 25 chr6 122251231 122251677 -67027877 - L1ME1 LINE L1 0 6166 5720 2313 87 0 0 chr6 122252336 122252636 -67026918 + AluSx SINE Alu 1 300 -12 225 348 80 22 chr6 122252791 122252929 -67026625 + MIR SINE MIR 117 262 0 204 270 280 0 chr6 122255796 122255896 -67023658 - MIR3 SINE MIR -21 187 60 624 260 121 0 chr6 122256605 122256778 -67022776 - MIR SINE MIR -46 216 23 313 256 42 83 chr6 122257800 122257968 -67021586 + L1ME LINE L1 531 691 -5379 864 278 64 59 chr6 122258003 122258802 -67020752 + L1ME LINE L1 875 1677 -4584 2117 90 3 16 chr6 122259410 122259721 -67019833 + AluSc SINE Alu 1 307 -2 29 21 0 21 chr6 122259811 122259830 -67019724 + AT_rich Low_complexity Low_complexity 1 19 -27 1746 148 4 0 chr6 122259830 122260100 -67019454 + AluJb SINE Alu 12 282 -30 29 21 0 21 chr6 122260100 122260127 -67019427 + AT_rich Low_complexity Low_complexity 19 46 0 255 257 75 80 chr6 122260182 122260369 -67019185 + MIR SINE MIR 29 214 -48 395 266 18 0 chr6 122260577 122260690 -67018864 - MER103 DNA DNA -42 124 10 799 330 78 29 chr6 122260712 122261302 -67018252 + L2 LINE L2 2147 2765 -549 234 287 39 85 chr6 122261360 122261489 -67018065 + L2 LINE L2 2929 3051 -262 1535 111 0 29 chr6 122261574 122261818 -67017736 - AluSg/x SINE Alu -5 307 71 983 116 0 37 chr6 122261818 122261982 -67017572 - AluSq SINE Alu -155 158 1 610 285 19 115 chr6 122262655 122263030 -67016524 + L2 LINE L2 2917 3255 -17 796 284 87 41 chr6 122264240 122264702 -67014852 - ERVL LTR ERVL -497 5267 4785 538 225 115 48 chr6 122264714 122264923 -67014631 + LTR16A1 LTR ERVL 235 457 0 364 237 144 52 chr6 122265295 122265489 -67014065 - MIR SINE MIR -35 227 16 220 269 202 29 chr6 122266092 122266196 -67013358 + L2 LINE L2 3150 3271 -1 618 297 114 5 chr6 122266237 122266439 -67013115 + MIR SINE MIR 18 241 -21 402 170 170 38 chr6 122267043 122267149 -67012405 - L2 LINE L2 -1 3312 3193 1037 154 89 9 chr6 122267239 122267453 -67012101 + L1MB2 LINE L1 5941 6171 0 590 233 13 69 chr6 122267786 122267945 -67011609 + MIR SINE MIR 21 170 -92 1672 153 45 0 chr6 122268080 122268348 -67011206 + AluJb SINE Alu 1 280 -32 456 291 104 14 chr6 122269049 122269269 -67010285 - MIR SINE MIR -10 252 13 1230 348 124 17 chr6 122269712 122270419 -67009135 + L3 LINE CR1 86 868 -709 1292 196 16 0 chr6 122270664 122270909 -67008645 - AluJo SINE Alu -17 295 47 350 356 148 4 chr6 122271116 122271394 -67008160 + L3 LINE CR1 960 1277 -300 593 283 113 4 chr6 122271490 122271720 -67007834 + MIR SINE MIR 2 256 -6 1116 118 0 15 chr6 122271944 122272139 -67007415 - L1MA7 LINE L1 -1 6290 6099 230 280 119 119 chr6 122272272 122272558 -67006996 - MER115 DNA AcHobo -223 470 185 740 240 120 75 chr6 122272990 122273431 -67006123 + LTR33A LTR ERVL 13 473 -50 335 336 20 41 chr6 122273496 122273642 -67005912 - MIR3 SINE MIR -63 145 3 324 0 0 0 chr6 122274034 122274070 -67005484 + (TC)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr6 122274070 122274092 -67005462 + (TG)n Simple_repeat Simple_repeat 2 23 0 2663 19 0 0 chr6 122274394 122274701 -67004853 - AluYa5 SINE Alu -4 307 1 2143 100 10 0 chr6 122276003 122276303 -67003251 - AluSx SINE Alu -9 303 1 306 258 145 24 chr6 122277287 122277411 -67002143 + MIR SINE MIR 76 214 -48 201 94 125 0 chr6 122277429 122277461 -67002093 + MIR SINE MIR 125 160 -102 729 110 0 0 chr6 122277711 122277820 -67001734 + (TA)n Simple_repeat Simple_repeat 2 110 0 21 0 0 0 chr6 122278022 122278043 -67001511 + AT_rich Low_complexity Low_complexity 1 21 0 287 227 126 8 chr6 122278043 122278162 -67001392 - MER103 DNA DNA -31 135 3 497 267 76 43 chr6 122278732 122278942 -67000612 - MIR SINE MIR -26 236 20 4616 215 55 25 chr6 122279057 122279535 -67000019 + L1ME1 LINE L1 3875 4337 -1809 1884 131 0 53 chr6 122279535 122279855 -66999699 - AluSx SINE Alu -9 303 1 4616 215 55 25 chr6 122279855 122280626 -66998928 + L1ME1 LINE L1 4337 5162 -984 1290 154 10 0 chr6 122280631 122280832 -66998722 - AluJo SINE Alu -23 289 87 1929 207 59 38 chr6 122280832 122281108 -66998446 + L1ME1 LINE L1 5152 5421 -745 2127 94 23 3 chr6 122281108 122281407 -66998147 + AluY SINE Alu 1 305 -6 1929 207 59 38 chr6 122281407 122281760 -66997794 + L1ME1 LINE L1 5421 5777 -389 1736 105 83 67 chr6 122281775 122281976 -66997578 - MER44D DNA MER2_type -1902 589 393 1953 103 0 79 chr6 122281976 122282305 -66997249 + AluSq SINE Alu 1 303 -10 1736 105 83 67 chr6 122282305 122282417 -66997137 - MER44D DNA MER2_type -2098 393 1 881 282 71 25 chr6 122282425 122282790 -66996764 + L1ME1 LINE L1 5779 6160 -6 328 349 67 0 chr6 122283116 122283265 -66996289 + L3 LINE CR1 535 693 -884 259 260 96 29 chr6 122283265 122283369 -66996185 - L2 LINE L2 -4 3309 3199 639 220 88 28 chr6 122283927 122284109 -66995445 + MIR SINE MIR 19 211 -51 1114 164 41 50 chr6 122284427 122284647 -66994907 + MER20 DNA MER1_type 2 219 0 653 220 54 38 chr6 122284661 122284847 -66994707 + MIR SINE MIR 48 236 -26 364 331 84 53 chr6 122284949 122285076 -66994478 - L3 LINE CR1 -349 1228 1106 1838 82 0 0 chr6 122285076 122285308 -66994246 + AluSc SINE Alu 60 291 -18 364 331 84 53 chr6 122285308 122285500 -66994054 - L3 LINE CR1 -471 1106 899 1992 124 26 16 chr6 122285841 122286148 -66993406 + AluSx SINE Alu 1 310 -2 604 220 161 0 chr6 122287155 122287341 -66992213 - L1ME3A LINE L1 0 6170 5955 321 98 33 16 chr6 122287385 122287446 -66992108 - L1MD2 LINE L1 -10 6349 6288 224 392 10 0 chr6 122287535 122287632 -66991922 + MIR SINE MIR 26 123 -139 489 303 168 0 chr6 122289057 122289265 -66990289 - MIR SINE MIR 0 262 20 265 272 0 149 chr6 122289455 122289556 -66989998 - MIR SINE MIR -1 261 201 1023 175 33 0 chr6 122289556 122289739 -66989815 - MER5A DNA MER1_type 0 189 1 265 272 0 149 chr6 122289739 122289832 -66989722 - MIR SINE MIR -61 201 96 926 106 0 77 chr6 122291110 122291280 -66988274 + FRAM SINE Alu 20 176 0 336 294 108 0 chr6 122291280 122291382 -66988172 + MIR SINE MIR 34 146 -116 215 274 53 21 chr6 122291657 122291752 -66987802 - MIR3 SINE MIR -19 189 92 2344 56 0 29 chr6 122292072 122292378 -66987176 + AluY SINE Alu 1 297 -14 27 29 0 0 chr6 122292871 122292905 -66986649 + AT_rich Low_complexity Low_complexity 1 34 0 2400 70 3 6 chr6 122293087 122293401 -66986153 + AluSp SINE Alu 1 313 0 3442 108 61 56 chr6 122293996 122294605 -66984949 - LTR9 LTR ERV1 0 612 1 369 333 43 0 chr6 122295250 122295412 -66984142 + MER117 DNA MER1_type 1 169 -28 2137 106 0 3 chr6 122296135 122296436 -66983118 + AluSg SINE Alu 1 300 -10 288 0 0 0 chr6 122296579 122296611 -66982943 + (TG)n Simple_repeat Simple_repeat 2 33 0 512 59 0 94 chr6 122298314 122298399 -66981155 - Alu SINE Alu -3 309 233 2579 39 0 3 chr6 122298403 122298715 -66980839 - AluY SINE Alu 0 311 1 1744 142 21 3 chr6 122299411 122299699 -66979855 + AluSx SINE Alu 1 293 -19 260 189 0 19 chr6 122299699 122299752 -66979802 + GA-rich Low_complexity Low_complexity 3 54 0 231 114 0 0 chr6 122299756 122299791 -66979763 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 192 293 127 83 chr6 122301017 122301198 -66978356 + MIR SINE MIR 20 208 -54 313 309 6 3 chr6 122301346 122301457 -66978097 + MIR SINE MIR 32 145 -63 309 258 157 0 chr6 122301508 122301597 -66977957 - L2 LINE L2 -1 3312 3210 186 143 0 0 chr6 122302273 122302308 -66977246 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 359 277 50 20 chr6 122303516 122303617 -66975937 - L2 LINE L2 0 3272 3169 208 214 0 24 chr6 122305675 122305717 -66973837 + polypurine Low_complexity Low_complexity 6 46 0 351 118 171 26 chr6 122305775 122305851 -66973703 + L1MB4 LINE L1 6081 6167 -13 353 179 39 13 chr6 122305859 122305937 -66973617 + L1MB8 LINE L1 6093 6172 -6 318 193 35 0 chr6 122308368 122308425 -66971129 - MIR SINE MIR -162 100 42 2074 76 7 17 chr6 122309456 122309744 -66969810 - AluSq SINE Alu -6 307 23 448 296 131 29 chr6 122310306 122310456 -66969098 + MLT1J LTR MaLR 166 299 -212 2240 104 0 0 chr6 122310456 122310755 -66968799 + AluSc SINE Alu 1 299 -10 448 296 131 29 chr6 122310755 122310918 -66968636 + MLT1J LTR MaLR 299 511 0 237 338 21 63 chr6 122311881 122311929 -66967625 - MIR3 SINE MIR -9 199 151 1817 120 69 4 chr6 122311929 122312203 -66967351 - AluSq SINE Alu -21 292 1 237 338 21 63 chr6 122312203 122312296 -66967258 - MIR3 SINE MIR -57 151 64 2202 86 3 0 chr6 122312360 122312652 -66966902 - AluY SINE Alu -17 294 2 633 221 67 3 chr6 122312669 122312847 -66966707 - MIR SINE MIR -21 241 4 481 226 103 7 chr6 122313022 122313168 -66966386 + MER103 DNA DNA 5 164 -2 412 220 220 0 chr6 122313179 122313297 -66966257 - Charlie1 DNA MER1_type -2577 184 41 743 144 0 0 chr6 122313297 122313408 -66966146 + FLAM_C SINE Alu 1 111 -32 30 0 0 0 chr6 122313686 122313716 -66965838 + AT_rich Low_complexity Low_complexity 1 30 0 201 213 0 0 chr6 122313735 122313782 -66965772 + CT-rich Low_complexity Low_complexity 1 47 0 1934 137 3 3 chr6 122314264 122314563 -66964991 - AluSx SINE Alu -13 299 1 2148 128 0 0 chr6 122315168 122315474 -66964080 + AluSx SINE Alu 3 308 -4 392 162 143 19 chr6 122315502 122315607 -66963947 - L1ME4a LINE L1 -19 6102 5985 1979 237 94 177 chr6 122316573 122317520 -66962034 + L2 LINE L2 647 1671 -1642 1850 134 41 0 chr6 122317520 122317812 -66961742 + AluSx SINE Alu 1 304 -8 1979 237 94 177 chr6 122317812 122318109 -66961445 + L2 LINE L2 1671 1991 -1322 463 254 57 0 chr6 122318109 122318231 -66961323 + MLT1J2 LTR MaLR 1 129 -321 1979 237 94 177 chr6 122318231 122318339 -66961215 + L2 LINE L2 1991 2106 -1207 413 279 116 7 chr6 122318339 122318486 -66961068 + MLT1J2 LTR MaLR 280 442 -8 1979 237 94 177 chr6 122318486 122319722 -66959832 + L2 LINE L2 2106 3312 -1 216 0 0 0 chr6 122320694 122320718 -66958836 + (CAA)n Simple_repeat Simple_repeat 1 24 0 437 272 44 45 chr6 122320720 122320896 -66958658 - MIR SINE MIR -55 207 33 234 250 0 62 chr6 122321199 122321263 -66958291 + MIR SINE MIR 40 99 -109 766 268 198 78 chr6 122321344 122322128 -66957426 + L3 LINE CR1 650 1527 -50 301 157 0 0 chr6 122322401 122322452 -66957102 - AluJo SINE Alu -5 297 247 1162 133 6 11 chr6 122322453 122322633 -66956921 - AluJo SINE Alu -133 179 1 317 252 81 27 chr6 122324267 122324378 -66955176 - MIR SINE MIR -62 146 30 829 311 108 23 chr6 122324739 122325211 -66954343 + MLT1K LTR MaLR 53 564 -24 280 247 13 13 chr6 122325333 122325410 -66954144 + L1MC4a LINE L1 30 106 -6290 1397 256 40 14 chr6 122325527 122325973 -66953581 + L1M4 LINE L1 4617 5074 -1072 1763 155 0 38 chr6 122326436 122326752 -66952802 + AluJb SINE Alu 1 304 -8 1695 286 40 39 chr6 122326752 122327321 -66952233 + MLT1G LTR MaLR 18 587 -3 693 297 93 72 chr6 122327890 122328607 -66950947 + L1MC4a LINE L1 2329 3060 -3155 23 0 0 0 chr6 122328790 122328813 -66950741 + AT_rich Low_complexity Low_complexity 1 23 0 249 278 98 52 chr6 122328819 122329226 -66950328 + L1MC4a LINE L1 3401 3826 -2389 * 364 279 92 49 chr6 122329225 122329562 -66949992 + L1MC4a LINE L1 4132 4508 -1707 599 229 0 15 chr6 122329562 122329693 -66949861 - FLAM_A SINE Alu -1 132 4 364 279 92 49 chr6 122329693 122329967 -66949587 + L1MC4a LINE L1 4508 4769 -1446 2349 193 62 44 chr6 122329977 122330590 -66948964 - MLT1E3 LTR MaLR 0 624 1 1565 122 4 42 chr6 122330677 122330940 -66948614 + AluJo SINE Alu 47 299 -13 1396 124 0 23 chr6 122331027 122331266 -66948288 + AluSg/x SINE Alu 73 306 0 21 0 0 0 chr6 122331420 122331441 -66948113 + AT_rich Low_complexity Low_complexity 1 21 0 345 268 94 14 chr6 122331446 122331584 -66947970 - MLT1J2 LTR MaLR -21 429 281 1192 144 53 49 chr6 122331629 122331801 -66947753 + MER33 DNA MER1_type 61 236 -2349 2100 122 3 0 chr6 122331801 122332105 -66947449 - AluSx SINE Alu -7 305 1 1192 144 53 49 chr6 122332105 122332195 -66947359 + MER33 DNA MER1_type 236 324 0 677 196 15 8 chr6 122332275 122332408 -66947146 - MLT1J1 LTR MaLR -312 134 1 180 176 0 0 chr6 122332472 122332506 -66947048 + GA-rich Low_complexity Low_complexity 4 37 0 42 36 0 0 chr6 122332520 122332576 -66946978 + AT_rich Low_complexity Low_complexity 1 56 0 797 284 157 33 chr6 122332769 122333343 -66946211 + L1MC4a LINE L1 5329 5973 -1904 2291 100 0 0 chr6 122333441 122333750 -66945804 + AluSx SINE Alu 1 309 -3 703 274 33 17 chr6 122333898 122334224 -66945330 - LTR16B LTR ERVL -50 414 35 470 332 25 20 chr6 122334381 122334577 -66944977 - L2 LINE L2 0 3313 3117 1724 160 10 10 chr6 122334704 122335016 -66944538 + AluJo SINE Alu 1 312 0 270 173 19 0 chr6 122335101 122335153 -66944401 - Charlie5 DNA MER1_type 0 2624 2572 2087 112 10 0 chr6 122335959 122336255 -66943299 + AluSx SINE Alu 1 299 -13 267 266 9 37 chr6 122336578 122336687 -66942867 + C-rich Low_complexity Low_complexity 3 108 0 291 191 0 0 chr6 122337377 122337440 -66942114 + (CA)n Simple_repeat Simple_repeat 1 63 0 199 348 54 27 chr6 122338053 122338165 -66941389 - L3b LINE CR1 -19 1564 1450 274 309 0 0 chr6 122338857 122338941 -66940613 + (TG)n Simple_repeat Simple_repeat 2 85 0 1279 299 55 28 chr6 122339746 122340831 -66938723 - L1ME2 LINE L1 -268 5879 4760 24 32 0 0 chr6 122342591 122342622 -66936932 + AT_rich Low_complexity Low_complexity 1 31 0 349 97 0 113 chr6 122342622 122342684 -66936870 + Alu SINE Alu 241 295 -7 330 153 0 0 chr6 122342684 122342743 -66936811 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 308 254 0 0 chr6 122342687 122342746 -66936808 + L1MC4 LINE L1 6640 6698 -1344 * 37 23 0 0 chr6 122342745 122342789 -66936765 + AT_rich Low_complexity Low_complexity 1 44 0 * 455 240 71 19 chr6 122342818 122342972 -66936582 + L1M4 LINE L1 4834 4995 -1151 468 250 69 47 chr6 122342973 122343029 -66936525 - L1ME2 LINE L1 -842 1648 1595 913 178 0 13 chr6 122343029 122343186 -66936368 + FRAM SINE Alu 1 155 -11 468 250 69 47 chr6 122343186 122343568 -66935986 - L1ME2 LINE L1 -895 1595 1533 325 222 21 97 chr6 122343576 122343611 -66935943 + L1M4 LINE L1 3956 3992 -2154 1863 179 0 3 chr6 122343611 122343912 -66935642 + AluJo SINE Alu 2 301 -11 325 222 21 97 chr6 122343912 122344020 -66935534 + L1M4 LINE L1 3992 4088 -2058 1714 140 32 16 chr6 122344554 122344868 -66934686 - L1MB8 LINE L1 0 6178 5860 3336 153 50 6 chr6 122344868 122345649 -66933905 - L1MB7 LINE L1 -1 6154 5319 1108 133 0 0 chr6 122345651 122345802 -66933752 - FRAM SINE Alu -22 154 4 1801 158 14 100 chr6 122345803 122346148 -66933406 - L1MB7 LINE L1 -814 5332 5045 2270 100 20 0 chr6 122346148 122346448 -66933106 + AluSg SINE Alu 1 306 -4 1801 158 14 100 chr6 122346448 122346620 -66932934 - L1MB7 LINE L1 -1101 5045 4860 50 0 0 0 chr6 122346674 122346724 -66932830 + AT_rich Low_complexity Low_complexity 1 50 0 267 190 0 0 chr6 122346725 122346783 -66932771 + (TA)n Simple_repeat Simple_repeat 1 58 0 1547 208 0 33 chr6 122346783 122347086 -66932468 - AluJo SINE Alu -19 293 1 35 41 0 0 chr6 122347088 122347137 -66932417 + AT_rich Low_complexity Low_complexity 1 49 0 1976 187 39 11 chr6 122347145 122347610 -66931944 - L1MB7 LINE L1 -1334 4812 4335 454 303 87 15 chr6 122347636 122348131 -66931423 - L1ME2 LINE L1 -4555 1574 1083 1430 167 4 4 chr6 122348156 122348384 -66931170 + AluJb SINE Alu 1 228 -84 288 34 34 51 chr6 122348391 122348450 -66931104 + (TA)n Simple_repeat Simple_repeat 2 59 0 328 306 86 59 chr6 122348783 122349038 -66930516 + MIR SINE MIR 1 262 0 396 319 30 6 chr6 122350058 122350227 -66929327 - MIR SINE MIR -56 206 34 208 216 0 0 chr6 122350531 122350568 -66928986 + polypurine Low_complexity Low_complexity 3 39 0 2357 104 0 0 chr6 122351647 122351954 -66927600 - AluSq SINE Alu -6 307 1 355 301 49 35 chr6 122351964 122352190 -66927364 - L1MC4a LINE L1 -1876 5932 5704 258 305 0 0 chr6 122352194 122352253 -66927301 - L1MC4a LINE L1 -2144 5664 5606 184 389 14 0 chr6 122355500 122355572 -66923982 - L2 LINE L2 -84 3188 3116 1185 221 44 66 chr6 122356012 122356287 -66923267 + MLT1I LTR MaLR 98 367 -42 1853 108 98 11 chr6 122356287 122356564 -66922990 + AluSg SINE Alu 1 301 -9 1185 221 44 66 chr6 122356564 122356605 -66922949 + MLT1I LTR MaLR 367 407 -2 372 257 88 9 chr6 122356605 122356718 -66922836 + MIR SINE MIR 69 190 -72 408 256 62 44 chr6 122356776 122356810 -66922744 + L1ME4a LINE L1 5956 5988 -133 2319 173 31 12 chr6 122356810 122357227 -66922327 - MSTB LTR MaLR 0 426 2 408 256 62 44 chr6 122357227 122357352 -66922202 + L1ME4a LINE L1 5988 6118 -3 1268 142 118 0 chr6 122357730 122357941 -66921613 + MER46A DNA MER2_type 1 236 0 4531 249 70 49 chr6 122358062 122360194 -66919360 - L2 LINE L2 -17 3296 1122 2230 200 92 22 chr6 122360324 122360878 -66918676 - MLT1E LTR MaLR 0 593 1 797 206 18 6 chr6 122361258 122361423 -66918131 + FRAM SINE Alu 1 167 -9 414 211 10 4 chr6 122362616 122362719 -66916835 - L1ME4a LINE L1 -40 6047 1203 277 222 0 0 chr6 122363139 122363193 -66916361 - L1MC4a LINE L1 -1870 5938 5885 29 47 0 0 chr6 122363840 122363883 -66915671 + AT_rich Low_complexity Low_complexity 1 43 0 245 192 0 55 chr6 122364084 122364157 -66915397 + MIR3 SINE MIR 118 186 -22 327 121 0 0 chr6 122365385 122365443 -66914111 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 1828 168 11 0 chr6 122365443 122365728 -66913826 - AluJb SINE Alu -24 288 1 614 246 32 21 chr6 122366375 122366562 -66912992 - MER5A DNA MER1_type 0 189 1 1025 170 0 12 chr6 122366791 122366809 -66912745 - AluJb SINE Alu -9 303 286 180 0 0 0 chr6 122366809 122366829 -66912725 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 1025 170 0 12 chr6 122366829 122366981 -66912573 - AluJb SINE Alu -26 286 135 7597 28 0 4 chr6 122367634 122368604 -66910950 - L1PA5 LINE L1 -5 6149 5174 24625 77 11 1 chr6 122368638 122371245 -66908309 - L1PA7 LINE L1 -7 6147 3486 243 0 0 0 chr6 122371245 122371272 -66908282 + (TTG)n Simple_repeat Simple_repeat 1 27 0 24625 77 11 1 chr6 122371272 122372704 -66906850 - L1PA7 LINE L1 -2668 3486 2070 2402 128 8 16 chr6 122372819 122373186 -66906368 - THE1B LTR MaLR 0 364 1 2541 137 60 5 chr6 122374246 122374415 -66905139 + MSTB LTR MaLR 1 159 -267 2049 100 7 11 chr6 122374415 122374686 -66904868 + AluSx SINE Alu 27 296 -16 2541 137 60 5 chr6 122374686 122374919 -66904635 + MSTB LTR MaLR 159 425 -1 2020 139 16 13 chr6 122374985 122375335 -66904219 - AluSx SINE Alu 0 352 2 1693 173 3 53 chr6 122375944 122376313 -66903241 - AluJo SINE Alu 0 312 1 21 0 0 0 chr6 122376384 122376405 -66903149 + AT_rich Low_complexity Low_complexity 1 21 0 2250 120 0 0 chr6 122376783 122377082 -66902472 - AluSx SINE Alu -12 300 2 2373 87 10 0 chr6 122377553 122377852 -66901702 + AluSx SINE Alu 1 302 -10 2510 73 3 0 chr6 122379279 122379580 -66899974 + AluY SINE Alu 1 302 -9 414 104 30 0 chr6 122379789 122379856 -66899698 - MADE1 DNA Mariner -11 69 1 22 35 0 0 chr6 122380084 122380113 -66899441 + AT_rich Low_complexity Low_complexity 1 29 0 226 213 28 135 chr6 122380356 122380432 -66899122 + L1ME2 LINE L1 1461 1517 -4879 2142 126 0 0 chr6 122380432 122380717 -66898837 + AluSx SINE Alu 2 286 -26 226 213 28 135 chr6 122380717 122380781 -66898773 + L1ME2 LINE L1 1517 1586 -4810 2720 217 73 67 chr6 122380789 122381703 -66897851 + L1ME2 LINE L1 3604 4526 -1689 2452 84 0 3 chr6 122381703 122382014 -66897540 + AluY SINE Alu 1 310 -1 2720 217 73 67 chr6 122382014 122382124 -66897430 + L1ME2 LINE L1 4526 4634 -1581 238 209 45 0 chr6 122382126 122382193 -66897361 + L1ME2 LINE L1 4708 4777 -1438 1969 174 104 42 chr6 122382204 122382667 -66896887 + MLT1D LTR MaLR 1 495 -10 2291 117 117 8 chr6 122382667 122383053 -66896501 + MSTA LTR MaLR 1 428 0 3074 220 48 38 chr6 122383090 122384469 -66895085 + L1ME2 LINE L1 4822 6219 -14 2260 101 0 0 chr6 122384490 122384777 -66894777 - AluSg SINE Alu -23 287 1 2150 113 3 0 chr6 122384784 122385066 -66894488 - AluSx SINE Alu -24 288 6 326 214 61 30 chr6 122385105 122385236 -66894318 + L1MC5 LINE L1 7783 7917 -44 1847 80 122 4 chr6 122385259 122385521 -66894033 + AluSc SINE Alu 1 293 -6 1964 158 0 7 chr6 122385893 122386196 -66893358 + AluJo SINE Alu 1 301 -11 590 239 109 84 chr6 122387344 122387629 -66891925 - MLT1L LTR MaLR -12 603 312 1661 69 0 5 chr6 122387648 122387851 -66891703 - AluY SINE Alu -15 296 95 2474 88 0 0 chr6 122388615 122388921 -66890633 - AluSx SINE Alu -6 306 1 1879 216 27 25 chr6 122389580 122390025 -66889529 + L1ME1 LINE L1 5720 6165 -1 299 298 16 0 chr6 122390144 122390268 -66889286 + (TAGTG)n Simple_repeat Simple_repeat 3 128 0 468 253 53 13 chr6 122390306 122390456 -66889098 - MER5A DNA MER1_type -31 158 3 289 315 0 43 chr6 122390879 122390971 -66888583 + MIR SINE MIR 36 123 -85 2401 78 0 3 chr6 122391209 122391505 -66888049 + AluSg SINE Alu 1 295 -15 265 130 120 87 chr6 122391506 122391598 -66887956 + L1MC5 LINE L1 7837 7931 -30 2366 77 0 0 chr6 122392298 122392583 -66886971 + AluSq SINE Alu 1 313 0 253 0 0 0 chr6 122392583 122392611 -66886943 + (TAAAA)n Simple_repeat Simple_repeat 2 170 0 969 210 75 96 chr6 122392625 122393245 -66886309 - MLT1D LTR MaLR -5 500 5 528 271 39 28 chr6 122393290 122393471 -66886083 - MER5A DNA MER1_type 0 189 7 689 269 17 0 chr6 122393579 122393754 -66885800 - MIR SINE MIR -4 258 81 285 122 20 0 chr6 122393824 122393873 -66885681 + L2 LINE L2 3256 3305 -8 216 242 187 11 chr6 122393892 122393983 -66885571 - MIR SINE MIR -49 213 107 318 50 0 0 chr6 122394456 122394496 -66885058 + (TCCCC)n Simple_repeat Simple_repeat 3 42 0 * 354 23 0 0 chr6 122394495 122394538 -66885016 + (TC)n Simple_repeat Simple_repeat 1 43 0 205 297 14 14 chr6 122394830 122394904 -66884650 + CT-rich Low_complexity Low_complexity 2 75 0 295 247 24 12 chr6 122395209 122395294 -66884260 - MIR SINE MIR -88 120 35 235 305 42 63 chr6 122395663 122395825 -66883729 - MIR3 SINE MIR -65 143 15 729 190 56 0 chr6 122396620 122396762 -66882792 - FRAM SINE Alu -21 155 6 1119 231 36 59 chr6 122396796 122396880 -66882674 + L1MC4a LINE L1 5521 5605 -516 588 67 45 0 chr6 122396880 122396969 -66882585 + L1PB2 LINE L1 6055 6147 -4 1119 231 36 59 chr6 122396969 122397328 -66882226 + L1MC4a LINE L1 5605 5824 -297 180 319 56 0 chr6 122399777 122399849 -66879705 - MIR3 SINE MIR -39 169 94 22 0 0 0 chr6 122401898 122401920 -66877634 + AT_rich Low_complexity Low_complexity 1 22 0 1734 74 5 0 chr6 122402026 122402241 -66877313 - AluSp SINE Alu -13 300 85 189 0 0 0 chr6 122404511 122404532 -66875022 + (A)n Simple_repeat Simple_repeat 1 21 0 203 340 103 0 chr6 122405091 122405188 -66874366 - MIR SINE MIR -86 176 70 2038 104 10 13 chr6 122405985 122406284 -66873270 + AluSx SINE Alu 1 298 -14 917 205 71 8 chr6 122406603 122406842 -66872712 - MER112 DNA MER1_type -1 255 2 758 233 66 35 chr6 122406996 122407224 -66872330 + MER102b DNA MER1_type 82 316 -25 571 188 11 6 chr6 122407234 122407415 -66872139 + GA-rich Low_complexity Low_complexity 1 182 0 639 269 131 40 chr6 122407553 122408002 -66871552 - L2 LINE L2 -17 3296 2807 314 270 0 50 chr6 122408089 122408189 -66871365 + MER5B DNA MER1_type 1 95 -83 183 129 0 0 chr6 122409607 122409638 -66869916 + (T)n Simple_repeat Simple_repeat 1 31 0 352 167 0 0 chr6 122410913 122410967 -66868587 + MER81 DNA DNA 30 83 -31 2595 53 7 0 chr6 122411209 122411513 -66868041 + AluY SINE Alu 1 306 -5 794 136 17 0 chr6 122411513 122411631 -66867923 - FLAM_A SINE Alu -13 120 1 873 145 7 0 chr6 122413839 122413977 -66865577 + AluJb SINE Alu 1 139 -173 26 0 0 0 chr6 122413992 122414018 -66865536 + AT_rich Low_complexity Low_complexity 1 26 0 310 211 11 11 chr6 122417580 122417675 -66861879 + GA-rich Low_complexity Low_complexity 2 96 0 299 294 25 17 chr6 122418798 122418917 -66860637 - MIR SINE MIR -76 186 67 523 265 20 0 chr6 122419731 122419882 -66859672 - MER103 DNA DNA -10 156 3 2314 52 52 7 chr6 122421246 122421535 -66858019 - AluY SINE Alu -9 302 1 2539 63 0 25 chr6 122423737 122424056 -66855498 + AluY SINE Alu 1 311 0 269 197 0 16 chr6 122424066 122424127 -66855427 + MIR SINE MIR 77 136 -126 334 308 63 17 chr6 122424168 122424366 -66855188 - MIR SINE MIR -54 208 3 1584 161 54 24 chr6 122424541 122424839 -66854715 - AluJo SINE Alu -5 307 1 1646 139 98 0 chr6 122427014 122427288 -66852266 - AluJb SINE Alu -11 301 1 3407 142 129 3 chr6 122427878 122428531 -66851023 + L1MC3 LINE L1 7051 7785 0 237 289 28 39 chr6 122428610 122428754 -66850800 + MIR SINE MIR 46 184 -78 1278 99 0 0 chr6 122429138 122429299 -66850255 - AluSg/x SINE Alu -30 282 122 1655 71 0 0 chr6 122429303 122429500 -66850054 - AluY SINE Alu -13 298 102 871 59 0 0 chr6 122429553 122429655 -66849899 - AluY SINE Alu -209 102 1 775 139 0 51 chr6 122429658 122429795 -66849759 - AluJo/FLAM SINE Alu -172 130 1 337 303 40 23 chr6 122430761 122430971 -66848583 - MIR SINE MIR -34 228 17 25 31 0 0 chr6 122431154 122431186 -66848368 + AT_rich Low_complexity Low_complexity 1 32 0 2013 167 0 0 chr6 122431195 122431507 -66848047 + AluJb SINE Alu 1 312 0 767 150 0 8 chr6 122431657 122431777 -66847777 + AluSq/x SINE Alu 2 120 -192 359 127 0 0 chr6 122431777 122431832 -66847722 + Alu SINE Alu 245 299 -2 838 210 85 54 chr6 122432272 122432496 -66847058 + MER8 DNA MER2_type 9 239 0 194 358 11 0 chr6 122433706 122433801 -66845753 + MIR SINE MIR 159 254 -8 195 42 0 0 chr6 122434243 122434267 -66845287 + (GGGTG)n Simple_repeat Simple_repeat 4 27 0 603 232 92 12 chr6 122434728 122434892 -66844662 - MER5B DNA MER1_type -1 177 1 26 30 0 0 chr6 122436045 122436078 -66843476 + AT_rich Low_complexity Low_complexity 1 33 0 252 269 0 39 chr6 122437041 122437119 -66842435 + L2 LINE L2 3239 3313 0 254 327 168 0 chr6 122437733 122437840 -66841714 - MIR SINE MIR -132 130 6 871 204 6 6 chr6 122440692 122440864 -66838690 + AluSg/x SINE Alu 137 308 -4 1568 199 25 71 chr6 122440922 122441315 -66838239 + LTR40b LTR ERVL 3 377 -85 1863 149 3 47 chr6 122441346 122441667 -66837887 - AluJo SINE Alu -5 307 1 761 248 190 39 chr6 122444017 122444432 -66835122 + MLT1J LTR MaLR 32 509 -2 25 31 0 0 chr6 122444525 122444557 -66834997 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr6 122445257 122445293 -66834261 + AT_rich Low_complexity Low_complexity 1 36 0 359 253 79 101 chr6 122445344 122445621 -66833933 - L2 LINE L2 -1 3312 3042 409 287 167 23 chr6 122445689 122445989 -66833565 - L2 LINE L2 -1121 2193 1851 610 220 113 30 chr6 122446018 122446186 -66833368 - MIR SINE MIR 0 262 81 1615 211 0 19 chr6 122447989 122448306 -66831248 + AluJb SINE Alu 1 311 -1 2048 140 13 0 chr6 122449170 122449470 -66830084 + AluSx SINE Alu 1 304 -8 304 176 15 44 chr6 122449499 122449567 -66829987 + L2 LINE L2 3248 3313 0 632 247 37 42 chr6 122451804 122451994 -66827560 - MIR3 SINE MIR -5 203 15 31 0 0 60 chr6 122455058 122455076 -66824478 + AT_rich Low_complexity Low_complexity 1 19 -28 2021 123 21 7 chr6 122455076 122455360 -66824194 - AluSx SINE Alu -21 291 4 31 0 0 60 chr6 122455360 122455391 -66824163 + AT_rich Low_complexity Low_complexity 19 47 0 222 214 48 12 chr6 122455394 122455478 -66824076 + (CATATA)n Simple_repeat Simple_repeat 2 88 0 291 214 42 107 chr6 122455576 122455744 -66823810 - L1MC5 LINE L1 -51 7910 7754 471 287 35 0 chr6 122456225 122456340 -66823214 - MIR SINE MIR -118 144 26 207 69 0 0 chr6 122457028 122457057 -66822497 + (CA)n Simple_repeat Simple_repeat 1 29 0 249 316 63 0 chr6 122457196 122457275 -66822279 - L2 LINE L2 -1 3312 3229 185 282 97 48 chr6 122458100 122458224 -66821330 + L2 LINE L2 3172 3301 -12 571 245 102 59 chr6 122458302 122458763 -66820791 + L1MC5 LINE L1 7311 7791 -170 253 238 191 24 chr6 122459126 122459210 -66820344 + L2 LINE L2 3172 3269 -3 300 270 186 38 chr6 122461216 122461444 -66818110 - MIR SINE MIR 0 262 4 260 323 30 10 chr6 122462226 122462325 -66817229 - MIR SINE MIR -1 261 161 655 239 90 56 chr6 122462368 122462570 -66816984 - MIR SINE MIR 0 262 49 1329 97 135 24 chr6 122462570 122462777 -66816777 - MER30 DNA MER1_type 0 230 1 655 239 90 56 chr6 122462777 122462808 -66816746 - MIR SINE MIR -213 49 21 295 314 33 35 chr6 122464539 122464689 -66814865 - MIR SINE MIR -61 147 34 1187 244 120 0 chr6 122465299 122465419 -66814135 + AluJo SINE Alu 2 106 -196 216 0 0 0 chr6 122465419 122465443 -66814111 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1187 244 120 0 chr6 122465443 122465580 -66813974 + AluJo SINE Alu 106 290 -12 22 0 0 0 chr6 122465963 122465985 -66813569 + AT_rich Low_complexity Low_complexity 1 22 0 236 30 30 0 chr6 122467820 122467853 -66811701 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2086 113 10 23 chr6 122468099 122468409 -66811145 - AluSx SINE Alu -6 306 1 2086 113 10 23 chr6 122518620 122518930 -66760624 - AluSx SINE Alu -6 306 1 394 202 48 0 chr6 122519210 122519294 -66760260 - MER20 DNA MER1_type -3 216 129 302 116 0 0 chr6 122519292 122519361 -66760193 + Alu SINE Alu 241 309 0 * 1623 261 61 52 chr6 122521786 122522479 -66757075 + L1MEc LINE L1 91 789 -5607 2378 230 120 52 chr6 122523501 122523662 -66755892 + L1MEc LINE L1 781 930 -5466 3350 145 39 31 chr6 122523662 122524282 -66755272 + L1MB8 LINE L1 5553 6177 -1 2378 230 120 52 chr6 122524282 122524293 -66755261 + L1MEc LINE L1 930 939 -5457 1916 148 3 20 chr6 122524293 122524428 -66755126 + AluSx SINE Alu 1 137 -175 2349 79 10 3 chr6 122524428 122524732 -66754822 + AluY SINE Alu 1 306 -5 1916 148 3 20 chr6 122524732 122524899 -66754655 + AluSx SINE Alu 137 298 -14 2378 230 120 52 chr6 122524899 122525932 -66753622 + L1MEc LINE L1 939 2069 -4327 640 170 36 6 chr6 122526088 122526253 -66753301 + AluY SINE Alu 127 296 -15 892 154 82 16 chr6 122526256 122526438 -66753116 + L1MD1 LINE L1 6041 6234 -8 266 211 150 90 chr6 122526585 122526690 -66752864 + L1ME4a LINE L1 5979 6095 -26 2288 110 0 7 chr6 122526690 122527000 -66752554 - AluSx SINE Alu -4 308 1 266 211 150 90 chr6 122527000 122527027 -66752527 + L1ME4a LINE L1 6095 6119 -2 22 0 0 0 chr6 122527985 122528007 -66751547 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr6 122530349 122530374 -66749180 + (A)n Simple_repeat Simple_repeat 1 25 0 468 227 31 16 chr6 122530395 122530523 -66749031 + MER103 DNA DNA 19 148 -18 216 0 0 0 chr6 122530852 122530876 -66748678 + (T)n Simple_repeat Simple_repeat 1 24 0 200 269 43 18 chr6 122531787 122531894 -66747660 + MIR SINE MIR 5 110 -98 729 190 17 0 chr6 122531968 122532084 -66747470 + FLAM_C SINE Alu 2 119 -24 387 0 0 0 chr6 122532087 122532130 -66747424 + (TAA)n Simple_repeat Simple_repeat 2 44 0 2831 25 0 6 chr6 122533724 122534044 -66745510 + AluYb8 SINE Alu 1 318 0 279 380 22 0 chr6 122535986 122536078 -66743476 + MIR3 SINE MIR 78 171 -37 456 240 202 27 chr6 122538243 122538359 -66741195 + MIR SINE MIR 34 128 -134 2027 119 36 33 chr6 122538359 122538662 -66740892 + AluSg SINE Alu 1 304 -6 456 240 202 27 chr6 122538662 122538728 -66740826 + MIR SINE MIR 128 248 -14 675 151 169 81 chr6 122540550 122540722 -66738832 - MER5A DNA MER1_type -1 188 2 848 256 6 0 chr6 122541156 122541332 -66738222 - MER5B DNA MER1_type -1 177 1 2464 75 0 7 chr6 122542937 122543245 -66736309 - AluSg1 SINE Alu -3 306 1 2170 113 0 3 chr6 122543278 122543571 -66735983 - AluSq SINE Alu -21 292 1 232 114 0 0 chr6 122543792 122543827 -66735727 + (TTTA)n Simple_repeat Simple_repeat 2 152 0 2242 60 3 3 chr6 122543827 122544110 -66735444 - AluY SINE Alu -28 283 1 341 304 133 19 chr6 122544220 122544378 -66735176 + MIR SINE MIR 87 262 0 21 0 0 0 chr6 122544479 122544500 -66735054 + AT_rich Low_complexity Low_complexity 1 21 0 1652 228 68 25 chr6 122545293 122545731 -66733823 - MLT1C LTR MaLR -4 463 7 1508 157 6 60 chr6 122546488 122546807 -66732747 + AluJo SINE Alu 1 302 -10 2330 83 0 0 chr6 122546817 122547118 -66732436 + AluY SINE Alu 1 301 -10 1597 160 4 21 chr6 122548895 122549044 -66730510 - AluJo SINE Alu -30 282 139 2254 87 0 3 chr6 122549044 122549342 -66730212 - AluSq SINE Alu -16 297 1 1597 160 4 21 chr6 122549342 122549473 -66730081 - AluJo SINE Alu -173 139 7 380 242 100 25 chr6 122549492 122549612 -66729942 + MIR3 SINE MIR 66 194 -14 21 0 0 0 chr6 122550305 122550326 -66729228 + AT_rich Low_complexity Low_complexity 1 21 0 428 254 35 18 chr6 122551223 122551337 -66728217 + MIR3 SINE MIR 45 160 -48 473 237 81 98 chr6 122551344 122551517 -66728037 + MER5B DNA MER1_type 9 178 0 21 0 0 0 chr6 122555048 122555069 -66724485 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 122555147 122555169 -66724385 + GC_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 122555462 122555491 -66724063 + GC_rich Low_complexity Low_complexity 1 29 0 254 295 19 0 chr6 122556546 122556651 -66722903 + (CG)n Simple_repeat Simple_repeat 1 107 0 237 145 48 0 chr6 122556747 122556809 -66722745 + GA-rich Low_complexity Low_complexity 1 65 0 22 0 0 0 chr6 122557474 122557496 -66722058 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 122557830 122557853 -66721701 + GC_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr6 122558104 122558154 -66721400 + GC_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr6 122558367 122558391 -66721163 + GC_rich Low_complexity Low_complexity 1 24 0 1289 135 111 49 chr6 122559526 122559814 -66719740 + AluJb SINE Alu 1 306 -6 184 292 104 0 chr6 122560987 122561083 -66718471 - MIR SINE MIR -5 257 152 * 420 275 119 36 chr6 122561076 122561269 -66718285 + MIR SINE MIR 6 214 -48 420 247 25 105 chr6 122561270 122561432 -66718122 + MER5B DNA MER1_type 26 174 -4 284 295 53 11 chr6 122561621 122561716 -66717838 - MIR SINE MIR -162 100 2 1243 183 8 12 chr6 122561905 122562146 -66717408 + AluJo SINE Alu 59 298 -14 586 147 60 26 chr6 122562158 122562274 -66717280 + Charlie8 DNA MER1_type 82 201 -2216 424 131 115 161 chr6 122562414 122562544 -66717010 - MER63 DNA MER1_type -312 750 1 388 252 112 21 chr6 122562690 122562833 -66716721 + L1MEd LINE L1 4 159 -5960 323 301 167 6 chr6 122563188 122563500 -66716054 + L1MEd LINE L1 566 927 -5192 2091 109 13 0 chr6 122563883 122564187 -66715367 + AluSx SINE Alu 1 308 -4 2000 108 0 10 chr6 122564237 122564534 -66715020 + AluSg SINE Alu 1 294 -16 721 208 87 0 chr6 122564898 122565047 -66714507 + MER21B LTR ERV1 329 490 -373 2029 142 0 3 chr6 122567115 122567424 -66712130 + AluSx SINE Alu 1 308 -4 451 233 28 42 chr6 122567424 122567589 -66711965 - L1ME3A LINE L1 -14 6150 5988 849 186 0 26 chr6 122567596 122567752 -66711802 + FRAM SINE Alu 5 156 -20 1329 245 18 55 chr6 122567864 122568179 -66711375 - L1ME3A LINE L1 -223 5947 5657 859 149 0 15 chr6 122568179 122568313 -66711241 - FLAM_C SINE Alu -1 132 1 1329 245 18 55 chr6 122568313 122568507 -66711047 - L1ME3A LINE L1 -513 5657 5457 419 279 84 84 chr6 122568606 122568798 -66710756 - MIR SINE MIR -10 198 5 2161 99 3 0 chr6 122569051 122569353 -66710201 - AluSx SINE Alu -9 303 1 423 280 149 12 chr6 122569561 122569729 -66709825 + MIR3 SINE MIR 14 204 -4 325 246 254 0 chr6 122569928 122570038 -66709516 + L2 LINE L2 3134 3271 -1 23 0 0 0 chr6 122570303 122570326 -66709228 + AT_rich Low_complexity Low_complexity 1 23 0 196 261 11 87 chr6 122573754 122573846 -66705708 - MIR SINE MIR -70 192 108 204 188 0 59 chr6 122574186 122574287 -66705267 + GA-rich Low_complexity Low_complexity 3 97 0 1682 231 46 29 chr6 122574572 122575096 -66704458 - L1ME3A LINE L1 -965 5181 4649 1204 220 0 15 chr6 122575096 122575360 -66704194 - AluJo SINE Alu -14 298 39 1450 230 49 85 chr6 122575360 122575489 -66704065 - L1ME3A LINE L1 -1490 4656 4524 1600 151 0 40 chr6 122575489 122575787 -66703767 - AluJb SINE Alu -5 307 22 1450 230 49 85 chr6 122575787 122576270 -66703284 - L1ME3A LINE L1 -1622 4524 4066 1570 267 12 18 chr6 122576271 122576777 -66702777 - L1ME3A LINE L1 -2313 3833 3331 1022 197 90 92 chr6 122576777 122576944 -66702610 - Charlie7 DNA MER1_type -694 1918 1752 2072 113 3 0 chr6 122576944 122577250 -66702304 + AluSp SINE Alu 1 307 0 1022 197 90 92 chr6 122577250 122577549 -66702005 - Charlie7 DNA MER1_type -860 1752 1452 278 157 20 0 chr6 122577578 122577629 -66701925 - Charlie7 DNA MER1_type -1134 1478 1427 * 350 309 70 48 chr6 122577626 122577940 -66701614 - Charlie7 DNA MER1_type -2291 321 1 199 122 195 0 chr6 122578353 122578394 -66701160 - L2 LINE L2 -201 3071 3023 456 292 82 36 chr6 122578676 122578981 -66700573 + L2 LINE L2 2874 3192 -121 1752 125 0 108 chr6 122579438 122579601 -66699953 + AluJo SINE Alu 1 109 -203 1948 124 0 0 chr6 122579601 122579883 -66699671 + AluSq SINE Alu 22 303 -10 1752 125 0 108 chr6 122579883 122580063 -66699491 + AluJo SINE Alu 109 307 -5 316 309 56 45 chr6 122580105 122580283 -66699271 - MER5A DNA MER1_type -3 186 7 306 318 85 0 chr6 122581308 122581437 -66698117 - MIR SINE MIR -74 188 49 180 176 0 0 chr6 122582009 122582043 -66697511 + CT-rich Low_complexity Low_complexity 2 35 0 399 181 0 36 chr6 122582043 122582126 -66697428 + T-rich Low_complexity Low_complexity 4 83 0 626 244 6 0 chr6 122582127 122582299 -66697255 + CT-rich Low_complexity Low_complexity 1 173 0 1875 125 21 0 chr6 122582301 122582588 -66696966 - AluSx SINE Alu -19 293 1 212 365 130 26 chr6 122583213 122583405 -66696149 + L2 LINE L2 3043 3254 -18 207 0 0 0 chr6 122583405 122583428 -66696126 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 2104 123 3 0 chr6 122583445 122583747 -66695807 - AluSx SINE Alu -9 303 1 3664 183 80 5 chr6 122583757 122584517 -66695037 - L1MB8 LINE L1 -1 6177 5361 275 209 70 132 chr6 122584572 122584701 -66694853 - MIR3 SINE MIR -85 123 3 276 231 15 15 chr6 122585315 122585380 -66694174 - MLT1I LTR MaLR 0 409 345 404 263 32 69 chr6 122585564 122585767 -66693787 - MLT1I LTR MaLR -199 210 15 1695 173 14 0 chr6 122586014 122586297 -66693257 - AluSx SINE Alu -25 287 1 534 143 0 0 chr6 122586568 122586645 -66692909 - AluJ/FLAM SINE Alu -234 78 2 232 293 27 40 chr6 122586682 122586757 -66692797 + L2 LINE L2 3198 3271 -1 283 333 138 0 chr6 122587245 122587404 -66692150 - L2 LINE L2 -962 2352 2172 1659 182 129 34 chr6 122587839 122588269 -66691285 + Charlie1b DNA MER1_type 7 487 -2274 1357 186 55 22 chr6 122588269 122588544 -66691010 + AluJb SINE Alu 1 284 -28 1659 182 129 34 chr6 122588544 122588585 -66690969 + Charlie1b DNA MER1_type 487 523 0 249 268 113 10 chr6 122588765 122588862 -66690692 + MIR SINE MIR 73 179 -83 266 114 0 0 chr6 122588882 122588917 -66690637 - AluJ/FLAM SINE Alu -235 67 33 304 264 257 0 chr6 122589215 122589355 -66690199 + MER5B DNA MER1_type 3 178 0 444 257 181 6 chr6 122589671 122589842 -66689712 - MIR SINE MIR 0 262 62 536 258 40 0 chr6 122590548 122590672 -66688882 + MIR SINE MIR 110 238 -24 274 313 104 21 chr6 122592201 122592345 -66687209 + MIR SINE MIR 79 234 -28 32 26 0 0 chr6 122592610 122592649 -66686905 + AT_rich Low_complexity Low_complexity 1 39 0 1701 153 0 51 chr6 122594763 122595058 -66684496 - AluJb SINE Alu -27 285 6 669 112 20 0 chr6 122595102 122595200 -66684354 - MER1B DNA MER1_type -9 330 231 2070 142 43 14 chr6 122595201 122595547 -66684007 + MLT1A1 LTR MaLR 10 365 0 297 259 120 9 chr6 122595838 122595946 -66683608 + L2 LINE L2 3148 3267 -5 582 292 35 15 chr6 122596090 122596292 -66683262 + MIR3 SINE MIR 3 208 0 1379 188 43 70 chr6 122596895 122597268 -66682286 + MLT1A1 LTR MaLR 1 363 -2 36424 43 109 1 chr6 122597601 122603134 -66676420 - L1PA4 LINE L1 0 6155 4 21 36 0 0 chr6 122603199 122603227 -66676327 + AT_rich Low_complexity Low_complexity 1 28 0 223 313 47 47 chr6 122604060 122604188 -66675366 - MER5A DNA MER1_type -3 175 48 210 358 30 15 chr6 122604377 122604444 -66675110 + L2 LINE L2 3158 3225 -47 500 259 105 0 chr6 122604679 122604822 -66674732 - MIR SINE MIR -2 260 103 379 118 21 32 chr6 122605048 122605141 -66674413 + CT-rich Low_complexity Low_complexity 3 94 0 1758 165 9 40 chr6 122605143 122605465 -66674089 - AluJo SINE Alu 0 312 1 248 286 0 0 chr6 122605494 122605550 -66674004 - L2 LINE L2 0 3272 3217 702 250 95 5 chr6 122605670 122605870 -66673684 - MIR SINE MIR -15 247 30 743 289 66 8 chr6 122608021 122608263 -66671291 + MIR SINE MIR 7 262 0 1086 138 44 6 chr6 122608912 122609093 -66670461 + L1MB3 LINE L1 5996 6183 0 432 184 40 0 chr6 122609397 122609473 -66670081 - MER2 DNA MER2_type 0 345 267 579 111 11 0 chr6 122609499 122609589 -66669965 - MER2 DNA MER2_type -135 210 120 576 143 0 0 chr6 122609589 122609673 -66669881 + AluJ/FLAM SINE Alu 1 84 -228 1228 130 10 53 chr6 122609674 122609753 -66669801 - MER2 DNA MER2_type -146 199 118 1937 143 13 7 chr6 122609753 122610053 -66669501 + AluJb SINE Alu 1 302 -10 1228 130 10 53 chr6 122610053 122610181 -66669373 - MER2 DNA MER2_type -227 118 1 300 267 61 15 chr6 122610436 122610606 -66668948 - L1MDa LINE L1 -5065 1478 1295 2338 97 3 0 chr6 122610870 122611179 -66668375 + AluSg SINE Alu 1 310 0 763 396 84 76 chr6 122611451 122611514 -66668040 + MLT1J2 LTR MaLR 9 70 -339 16798 104 35 11 chr6 122611514 122613622 -66665932 + Tigger1 DNA MER2_type 1 2174 -244 2109 114 7 17 chr6 122613622 122613757 -66665797 + AluSx SINE Alu 1 136 -176 2144 109 3 0 chr6 122613757 122614072 -66665482 + AluSp SINE Alu 1 316 0 2109 114 7 17 chr6 122614072 122614234 -66665320 + AluSx SINE Alu 136 296 -16 16798 104 35 11 chr6 122614234 122614486 -66665068 + Tigger1 DNA MER2_type 2174 2418 0 763 396 84 76 chr6 122614486 122614819 -66664735 + MLT1J2 LTR MaLR 70 406 -3 2303 96 0 3 chr6 122614969 122615262 -66664292 + AluSg SINE Alu 1 292 -18 2907 106 13 34 chr6 122615270 122615741 -66663813 + L1PA16 LINE L1 5319 5779 -377 211 214 0 0 chr6 122615741 122615783 -66663771 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 578 108 0 0 chr6 122615963 122616037 -66663517 + AluS SINE Alu 2 75 -237 2243 160 3 6 chr6 122616039 122616050 -66663504 + L1PA16 LINE L1 5782 5792 -374 390 42 0 0 chr6 122616050 122616098 -66663456 + (CA)n Simple_repeat Simple_repeat 2 49 0 2243 160 3 6 chr6 122616098 122616448 -66663106 + L1PA16 LINE L1 5792 6142 -24 1417 150 10 77 chr6 122616507 122616807 -66662747 - AluJo SINE Alu -32 280 1 1433 182 0 0 chr6 122616894 122617125 -66662429 + AluJb SINE Alu 1 231 -81 2270 112 0 6 chr6 122617668 122617980 -66661574 + AluSx SINE Alu 1 310 -2 2100 120 31 0 chr6 122618009 122618301 -66661253 + AluSq SINE Alu 1 301 -12 1562 208 33 28 chr6 122619385 122619775 -66659779 - L1ME1 LINE L1 -5 6161 5770 271 258 58 42 chr6 122620686 122620806 -66658748 + MIR3 SINE MIR 66 187 -21 2325 142 49 0 chr6 122621023 122621367 -66658187 - MER46B DNA MER2_type 0 236 1 953 153 60 0 chr6 122621392 122621542 -66658012 + FRAM SINE Alu 1 159 -7 1362 189 92 39 chr6 122622025 122622384 -66657170 + L1ME1 LINE L1 5783 6160 -6 23 0 0 0 chr6 122623058 122623081 -66656473 + AT_rich Low_complexity Low_complexity 1 23 0 203 290 54 21 chr6 122623750 122623843 -66655711 - MIR SINE MIR -121 141 46 242 275 43 0 chr6 122625129 122625198 -66654356 + MIR3 SINE MIR 137 208 0 508 178 39 54 chr6 122625340 122625469 -66654085 + L2 LINE L2 3187 3313 0 2166 106 17 3 chr6 122625774 122626076 -66653478 - AluSx SINE Alu -6 306 1 204 40 0 0 chr6 122626283 122626308 -66653246 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 207 297 110 0 chr6 122627654 122627745 -66651809 + MIR SINE MIR 45 145 -63 2200 121 3 0 chr6 122627871 122628168 -66651386 + AluSg SINE Alu 1 298 -12 21 0 0 0 chr6 122628268 122628289 -66651265 + AT_rich Low_complexity Low_complexity 1 21 0 2186 119 3 0 chr6 122629447 122629733 -66649821 - AluSx SINE Alu -25 287 1 1212 234 161 48 chr6 122630094 122630578 -66648976 + MLT1H LTR MaLR 11 549 0 847 279 111 53 chr6 122630996 122631716 -66647838 + L1ME4a LINE L1 5316 6077 -44 218 191 170 0 chr6 122631974 122632021 -66647533 + L2 LINE L2 3169 3223 -49 22 0 0 0 chr6 122633320 122633342 -66646212 + AT_rich Low_complexity Low_complexity 1 22 0 2314 108 0 13 chr6 122633351 122633667 -66645887 + AluSx SINE Alu 1 312 0 1664 163 60 0 chr6 122634305 122634588 -66644966 + AluSx SINE Alu 2 301 -11 217 236 0 0 chr6 122636417 122636472 -66643082 + T-rich Low_complexity Low_complexity 6 60 0 2272 108 0 3 chr6 122638041 122638346 -66641208 - AluSc SINE Alu -5 304 1 319 280 53 0 chr6 122638816 122638891 -66640663 + MER91 DNA MER1_type 45 123 -73 1917 251 70 28 chr6 122638899 122639501 -66640053 - L1ME LINE L1 -5438 632 6 1871 113 53 50 chr6 122639552 122639854 -66639700 - AluSx SINE Alu -9 303 1 219 293 98 58 chr6 122640065 122640239 -66639315 + L2 LINE L2 3127 3307 -6 195 42 0 0 chr6 122640895 122640919 -66638635 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 259 192 13 103 chr6 122640950 122641028 -66638526 - MIR SINE MIR -65 143 73 858 219 0 0 chr6 122641047 122641202 -66638352 - FAM SINE Alu -19 156 2 198 348 152 13 chr6 122641257 122641415 -66638139 + L2 LINE L2 3083 3262 -10 2054 130 48 0 chr6 122641417 122641710 -66637844 + AluSx SINE Alu 1 307 -5 27 62 0 0 chr6 122642399 122642447 -66637107 + AT_rich Low_complexity Low_complexity 1 48 0 2085 132 0 13 chr6 122642453 122642764 -66636790 + AluJb SINE Alu 5 311 -1 288 0 0 0 chr6 122642764 122642796 -66636758 + (TA)n Simple_repeat Simple_repeat 2 33 0 199 301 84 0 chr6 122643865 122643948 -66635606 + L3 LINE CR1 1485 1574 -3 2158 163 27 35 chr6 122644978 122645463 -66634091 - Charlie1a DNA MER1_type -5 1450 970 2102 144 53 15 chr6 122645469 122645880 -66633674 + L1MC3 LINE L1 7168 7594 -191 856 165 82 0 chr6 122645880 122646062 -66633492 + L1MC2 LINE L1 6137 6333 -11 4575 170 34 37 chr6 122646070 122647053 -66632501 - Charlie1a DNA MER1_type -475 980 1 1877 113 23 0 chr6 122647612 122647869 -66631685 - AluSx SINE Alu -12 300 38 934 243 46 18 chr6 122647936 122648154 -66631400 + MIR SINE MIR 2 225 -37 1413 196 4 4 chr6 122649130 122649380 -66630174 + AluJb SINE Alu 1 250 -62 2297 70 0 0 chr6 122649979 122650266 -66629288 - AluY SINE Alu -24 287 1 22 0 0 0 chr6 122650622 122650644 -66628910 + AT_rich Low_complexity Low_complexity 1 22 0 6417 89 3 8 chr6 122653046 122654540 -66625014 + L1PA10 LINE L1 4667 6157 -11 2408 84 0 16 chr6 122654563 122654872 -66624682 + AluSq SINE Alu 1 304 -9 1850 163 10 0 chr6 122655323 122655630 -66623924 + AluSx SINE Alu 3 312 0 261 83 0 0 chr6 122655636 122655672 -66623882 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 499 90 0 0 chr6 122655673 122655740 -66623814 + Alu SINE Alu 231 297 -14 2104 142 43 93 chr6 122655917 122656475 -66623079 - L1MA9 LINE L1 -39 6273 5744 1836 93 50 4 chr6 122656700 122656959 -66622595 + AluSg SINE Alu 38 308 -2 365 235 22 81 chr6 122657375 122657511 -66622043 - MER21B LTR ERV1 -373 490 363 420 289 89 15 chr6 122657576 122657846 -66621708 + L1ME LINE L1 5520 5809 -312 2277 266 89 64 chr6 122658345 122658540 -66621014 + HAL1 LINE L1 240 429 -2078 2644 124 64 0 chr6 122658540 122658959 -66620595 + MER83 LTR ERV1 3 448 0 2277 266 89 64 chr6 122658959 122660212 -66619342 + HAL1 LINE L1 429 1724 -783 791 274 28 35 chr6 122660215 122660532 -66619022 + L1ME LINE L1 2 316 -5754 2091 114 10 10 chr6 122660883 122661172 -66618382 + AluSq SINE Alu 10 298 -15 28 48 0 0 chr6 122661183 122661225 -66618329 + AT_rich Low_complexity Low_complexity 1 42 0 595 193 50 0 chr6 122661414 122661554 -66618000 - L1ME3A LINE L1 -276 5894 5748 430 105 2 0 chr6 122661554 122661623 -66617931 - MLT1B LTR MaLR 0 390 331 201 238 0 0 chr6 122661633 122661696 -66617858 + (TA)n Simple_repeat Simple_repeat 1 63 0 1259 174 56 43 chr6 122661698 122662020 -66617534 - MLT1B LTR MaLR -64 326 1 1078 226 45 7 chr6 122662020 122662308 -66617246 - L1ME3A LINE L1 -418 5752 5454 674 171 54 0 chr6 122662413 122662524 -66617030 + FLAM_A SINE Alu 6 122 -20 30 59 0 0 chr6 122662558 122662609 -66616945 + AT_rich Low_complexity Low_complexity 1 51 0 234 0 0 0 chr6 122662739 122662765 -66616789 + (CAG)n Simple_repeat Simple_repeat 2 27 0 2202 115 13 3 chr6 122665109 122665414 -66614140 - AluSx SINE Alu -4 308 1 1870 178 0 7 chr6 122665998 122666302 -66613252 - AluJo SINE Alu -10 302 1 2339 84 0 3 chr6 122666310 122666609 -66612945 - AluY SINE Alu -13 298 1 1762 159 10 19 chr6 122666663 122666971 -66612583 + AluJo SINE Alu 1 305 -7 590 169 0 51 chr6 122667385 122667421 -66612133 + FLAM_A SINE Alu 25 61 -250 2356 70 0 0 chr6 122667421 122667746 -66611808 - AluY SINE Alu 0 311 1 590 169 0 51 chr6 122667746 122667827 -66611727 + FLAM_A SINE Alu 61 136 -175 512 248 34 21 chr6 122667828 122668064 -66611490 + L1M4c LINE L1 2268 2506 -3876 1253 192 160 64 chr6 122668228 122668873 -66610681 - L1MC5 LINE L1 -248 7713 7007 2720 249 74 10 chr6 122668881 122669801 -66609753 + L1MEc LINE L1 362 1340 -5381 753 206 7 0 chr6 122669814 122669950 -66609604 + FLAM_A SINE Alu 6 142 0 322 229 0 21 chr6 122669950 122670046 -66609508 + L1MEc LINE L1 1342 1435 -5286 * 1455 232 86 73 chr6 122670037 122671204 -66608350 + L1MEc LINE L1 1261 2543 -4178 413 101 14 0 chr6 122671203 122671272 -66608282 + L1MB7 LINE L1 5842 5911 -267 * 314 169 0 0 chr6 122671273 122671332 -66608222 - U2 snRNA snRNA -129 59 1 1698 191 38 18 chr6 122671346 122671686 -66607868 - MER7A DNA MER2_type 0 346 2 1046 134 89 9 chr6 122671691 122671915 -66607639 + L1MB7 LINE L1 5902 6143 -41 3540 213 77 8 chr6 122671934 122673044 -66606510 + L1MEc LINE L1 2478 3664 -2876 504 226 43 27 chr6 122673067 122673253 -66606301 - L1MC5 LINE L1 -44 7917 7729 2058 118 42 0 chr6 122673483 122673772 -66605782 + AluSg SINE Alu 1 301 -9 1466 199 62 62 chr6 122675374 122675826 -66603728 + LTR40c LTR ERVL 1 452 -13 2063 114 13 22 chr6 122676406 122676721 -66602833 + AluSx SINE Alu 1 312 0 194 105 26 0 chr6 122677256 122677294 -66602260 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7587 27 3 0 chr6 122677486 122678820 -66600734 + L1PA4 LINE L1 4799 6154 -1 212 0 36 0 chr6 122679140 122679168 -66600386 + (TAGA)n Simple_repeat Simple_repeat 4 32 0 360 200 0 0 chr6 122679172 122679262 -66600292 + (TA)n Simple_repeat Simple_repeat 1 90 0 2024 138 7 0 chr6 122679263 122679554 -66600000 - AluJo SINE Alu -19 293 1 203 206 0 0 chr6 122680452 122680486 -66599068 - L2 LINE L2 -19 3253 3220 1933 163 3 0 chr6 122681628 122681929 -66597625 + AluJo SINE Alu 11 312 0 468 0 0 0 chr6 122682318 122682370 -66597184 + (TG)n Simple_repeat Simple_repeat 2 53 0 9360 114 16 17 chr6 122682387 122682740 -66596814 + Tigger1 DNA MER2_type 2 354 -2064 432 0 0 0 chr6 122682740 122682788 -66596766 + (TC)n Simple_repeat Simple_repeat 1 48 0 9360 114 16 17 chr6 122682788 122683936 -66595618 + Tigger1 DNA MER2_type 354 1502 -916 2027 158 62 3 chr6 122683937 122684311 -66595243 + Tigger1 DNA MER2_type 2023 2418 0 414 0 0 0 chr6 122684318 122684364 -66595190 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 1971 157 0 0 chr6 122684536 122684829 -66594725 - AluSx SINE Alu -19 293 1 394 247 144 25 chr6 122684898 122685154 -66594400 + MLT1F LTR MaLR 33 285 -305 417 173 47 87 chr6 122685244 122685371 -66594183 + MLT1F LTR MaLR 413 534 -8 387 240 8 99 chr6 122685551 122685672 -66593882 + MER81 DNA DNA 4 113 -1 39 0 0 0 chr6 122686687 122686726 -66592828 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr6 122687517 122687541 -66592013 + AT_rich Low_complexity Low_complexity 1 24 0 1999 110 59 7 chr6 122687575 122687865 -66591689 - AluSg SINE Alu -5 305 1 2148 107 35 0 chr6 122687952 122688241 -66591313 + AluSx SINE Alu 1 299 -13 265 132 15 59 chr6 122688692 122688760 -66590794 - L1ME3A LINE L1 -1 6169 6105 655 207 133 5 chr6 122688762 122688950 -66590604 - L1ME3A LINE L1 -112 6058 5847 203 343 71 0 chr6 122689087 122689157 -66590397 - L2 LINE L2 -12 3260 3186 322 304 122 9 chr6 122689262 122689377 -66590177 + MIR3 SINE MIR 66 193 -15 323 255 20 74 chr6 122689710 122689859 -66589695 - MIR SINE MIR -15 247 107 1594 161 127 47 chr6 122689878 122690239 -66589315 + MLT1B LTR MaLR 1 390 0 314 220 33 44 chr6 122690476 122690567 -66588987 - MIR SINE MIR -171 91 2 1533 179 11 14 chr6 122691207 122691487 -66588067 + MLT1A1 LTR MaLR 1 279 -86 1113 199 22 22 chr6 122691504 122691735 -66587819 - MIR SINE MIR -2 260 30 2232 112 0 0 chr6 122691978 122692265 -66587289 + AluSc SINE Alu 1 287 -22 405 333 17 17 chr6 122692402 122692519 -66587035 + L2 LINE L2 3155 3271 -1 186 261 70 87 chr6 122692501 122692616 -66586938 - L2 LINE L2 0 3272 3160 * 1384 156 5 0 chr6 122692805 122693016 -66586538 - AluJo SINE Alu -100 212 1 689 227 196 0 chr6 122693159 122693379 -66586175 + LTR53 LTR ERVL 257 519 0 334 306 188 50 chr6 122693649 122694185 -66585369 - L2 LINE L2 -459 2855 2246 2067 127 28 3 chr6 122694191 122694513 -66585041 + MER49 LTR ERV1 585 914 -9 2247 103 3 0 chr6 122694528 122694828 -66584726 + AluSx SINE Alu 1 301 -11 2023 114 0 24 chr6 122694834 122695123 -66584431 + AluSx SINE Alu 1 282 -30 240 35 0 0 chr6 122695129 122695158 -66584396 + (TAA)n Simple_repeat Simple_repeat 2 30 0 285 234 143 0 chr6 122695178 122695255 -66584299 - MLT1K LTR MaLR -19 569 482 502 206 91 74 chr6 122695531 122695706 -66583848 + MER5B DNA MER1_type 1 178 0 2068 101 63 3 chr6 122696537 122696823 -66582731 + AluSq SINE Alu 1 303 -10 2338 87 0 0 chr6 122697017 122697315 -66582239 + AluSq SINE Alu 1 298 -15 2029 133 10 0 chr6 122698178 122698471 -66581083 + AluSx SINE Alu 3 298 -14 5832 163 26 6 chr6 122698484 122698865 -66580689 + L1PB3 LINE L1 4492 4864 -1290 2656 84 19 6 chr6 122698865 122699224 -66580330 + THE1B LTR MaLR 1 364 0 5832 163 26 6 chr6 122699224 122700466 -66579088 + L1PB3 LINE L1 4864 6152 -2 249 306 19 72 chr6 122700532 122700600 -66578954 + L1MC4a LINE L1 5569 5639 -2169 2260 119 3 0 chr6 122700600 122700903 -66578651 + AluSx SINE Alu 1 304 -8 249 306 19 72 chr6 122700903 122701043 -66578511 + L1MC4a LINE L1 5639 5766 -2042 1237 162 61 9 chr6 122701102 122701330 -66578224 + AluJo SINE Alu 71 310 -2 318 313 73 73 chr6 122701332 122701607 -66577947 + L1MC4a LINE L1 5816 6090 -1718 180 267 0 0 chr6 122702735 122702795 -66576759 + (TA)n Simple_repeat Simple_repeat 2 61 0 451 341 45 6 chr6 122702798 122702974 -66576580 + MIR3 SINE MIR 4 186 -22 210 71 0 0 chr6 122702981 122703009 -66576545 + (CA)n Simple_repeat Simple_repeat 2 29 0 359 248 96 25 chr6 122704152 122704309 -66575245 - MIR3 SINE MIR -25 183 16 242 226 19 0 chr6 122704360 122704413 -66575141 + (CATA)n Simple_repeat Simple_repeat 3 56 0 189 107 0 0 chr6 122705911 122705939 -66573615 + (T)n Simple_repeat Simple_repeat 1 28 0 249 135 0 0 chr6 122706077 122706114 -66573440 - Alu SINE Alu -84 218 182 202 169 90 11 chr6 122707967 122708056 -66571498 + (TTTAA)n Simple_repeat Simple_repeat 5 100 0 182 307 40 53 chr6 122708546 122708621 -66570933 + L3 LINE CR1 1321 1394 -183 951 239 24 0 chr6 122709987 122710200 -66569354 - MER58A DNA MER1_type -3 221 4 1988 81 4 0 chr6 122710321 122710596 -66568958 + AluY SINE Alu 37 312 0 240 327 67 39 chr6 122710946 122711050 -66568504 + L2 LINE L2 2948 3054 -218 1866 157 16 19 chr6 122711096 122711128 -66568426 - AluJo SINE Alu 0 312 281 423 38 0 0 chr6 122711128 122711181 -66568373 + (TG)n Simple_repeat Simple_repeat 2 54 0 1866 157 16 19 chr6 122711181 122711461 -66568093 - AluJo SINE Alu -31 281 1 40767 65 6 3 chr6 122711481 122717601 -66561953 - L1PA5 LINE L1 -1 6153 13 465 314 136 31 chr6 122717715 122718068 -66561486 - HAL1b LINE L1 -628 720 331 2126 102 14 14 chr6 122718099 122718393 -66561161 - AluSq SINE Alu -19 294 1 537 300 142 0 chr6 122719141 122719458 -66560096 - L1ME4a LINE L1 -4 6117 5756 183 80 0 0 chr6 122719573 122719598 -66559956 + (A)n Simple_repeat Simple_repeat 1 25 0 740 315 84 30 chr6 122719620 122720026 -66559528 + L1MEc LINE L1 18 445 -5951 363 108 21 15 chr6 122720217 122720291 -66559263 + Alu SINE Alu 236 301 -1 606 221 100 13 chr6 122720291 122720522 -66559032 + L1MEc LINE L1 681 931 -5465 2769 219 46 50 chr6 122720528 122720709 -66558845 + L1MDa LINE L1 18 198 -6342 1526 184 7 33 chr6 122720709 122721008 -66558546 - AluJo SINE Alu -10 302 12 2769 219 46 50 chr6 122721008 122721608 -66557946 + L1MDa LINE L1 198 1023 -5517 236 150 0 0 chr6 122721626 122721666 -66557888 + LTR54 LTR ERV1 410 449 -61 2190 107 0 0 chr6 122721678 122721958 -66557596 + AluSx SINE Alu 1 280 -32 183 80 0 0 chr6 122721958 122721983 -66557571 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 4397 157 5 36 chr6 122721985 122722769 -66556785 + L1MB3 LINE L1 5374 6132 -51 2014 143 0 3 chr6 122722769 122723056 -66556498 + AluJb SINE Alu 1 286 -26 4397 157 5 36 chr6 122723056 122723105 -66556449 + L1MB3 LINE L1 6132 6181 -2 836 175 85 14 chr6 122723108 122723319 -66556235 + L1MDa LINE L1 1007 1232 -5308 2099 123 0 7 chr6 122723386 122723694 -66555860 + AluSx SINE Alu 1 306 0 666 217 132 37 chr6 122723694 122723989 -66555565 + L1MDa LINE L1 2828 3150 -3390 241 315 77 21 chr6 122725240 122725383 -66554171 + L2 LINE L2 3162 3312 -1 2405 91 0 3 chr6 122725925 122726233 -66553321 - AluSg SINE Alu -3 307 1 28 29 0 0 chr6 122726579 122726614 -66552940 + AT_rich Low_complexity Low_complexity 1 35 0 1612 123 57 63 chr6 122726839 122726974 -66552580 + AluSx SINE Alu 4 138 -174 2846 7 0 0 chr6 122726974 122727282 -66552272 + AluYb8 SINE Alu 1 308 -10 1612 123 57 63 chr6 122727282 122727447 -66552107 + AluSx SINE Alu 138 302 -10 446 73 91 15 chr6 122727515 122727863 -66551691 + (TA)n Simple_repeat Simple_repeat 1 374 0 6587 150 14 34 chr6 122727949 122728336 -66551218 + L1MA2 LINE L1 3877 4270 -2034 2157 142 0 0 chr6 122728336 122728645 -66550909 + AluJb SINE Alu 1 309 -3 6587 150 14 34 chr6 122728645 122728662 -66550892 + L1MA2 LINE L1 4270 4286 -2018 312 167 0 0 chr6 122728662 122728716 -66550838 - FRAM/FAM SINE Alu -120 55 2 6587 150 14 34 chr6 122728716 122728929 -66550625 + L1MA2 LINE L1 4286 4502 -1802 2354 98 0 0 chr6 122728929 122729236 -66550318 + AluSc SINE Alu 1 307 -2 6587 150 14 34 chr6 122729236 122730858 -66548696 + L1MA2 LINE L1 4502 6053 -251 2220 102 0 52 chr6 122730858 122730999 -66548555 + AluSx SINE Alu 1 148 -164 1658 85 5 9 chr6 122730999 122731211 -66548343 + AluSx SINE Alu 14 224 -88 2220 102 0 52 chr6 122731211 122731394 -66548160 + AluSx SINE Alu 148 308 -4 6587 150 14 34 chr6 122731394 122731624 -66547930 + L1MA2 LINE L1 6053 6286 -18 2284 114 0 0 chr6 122731626 122731933 -66547621 + AluSx SINE Alu 3 309 -3 1477 150 57 8 chr6 122732242 122732353 -66547201 + AluJb SINE Alu 7 111 -201 260 83 21 0 chr6 122732353 122732401 -66547153 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 1477 150 57 8 chr6 122732401 122732535 -66547019 + AluJb SINE Alu 111 264 -48 459 167 0 0 chr6 122732563 122732653 -66546901 + CT-rich Low_complexity Low_complexity 1 90 0 1945 160 3 3 chr6 122732718 122733024 -66546530 + AluJb SINE Alu 7 312 0 22 0 0 0 chr6 122733305 122733327 -66546227 + AT_rich Low_complexity Low_complexity 1 22 0 1256 192 10 28 chr6 122733637 122733928 -66545626 + L1ME1 LINE L1 5701 5986 -180 1996 133 0 4 chr6 122733966 122734245 -66545309 + AluSx SINE Alu 1 278 -34 403 262 7 7 chr6 122734245 122734386 -66545168 + GA-rich Low_complexity Low_complexity 3 143 0 599 270 6 0 chr6 122734424 122734587 -66544967 + L1MA10 LINE L1 6169 6332 -2 1572 102 25 0 chr6 122735998 122736234 -66543320 - Tigger4(Zombi) DNA MER2_type -111 2620 2379 562 118 0 0 chr6 122736266 122736342 -66543212 - U6 snRNA snRNA -31 76 1 * 1724 146 80 47 chr6 122736302 122736664 -66542890 - Tigger4(Zombi) DNA MER2_type -303 2428 2055 3668 106 18 30 chr6 122736664 122737423 -66542131 + L1P5 LINE L1 5033 5781 -370 757 53 0 0 chr6 122737429 122737524 -66542030 + L1P LINE L1 4 98 -6048 * 20951 52 5 0 chr6 122737522 122740194 -66539360 + L1P LINE L1 623 3307 -2839 30 0 0 0 chr6 122740486 122740516 -66539038 + AT_rich Low_complexity Low_complexity 1 30 0 2415 274 100 36 chr6 122741202 122741922 -66537632 - L1ME LINE L1 -3917 2344 1672 2123 124 3 0 chr6 122741922 122742233 -66537321 - AluSq SINE Alu 0 314 3 2415 274 100 36 chr6 122742233 122742281 -66537273 - L1ME LINE L1 -4589 1672 1629 1687 186 3 10 chr6 122742281 122742577 -66536977 - AluJo SINE Alu -9 303 10 2415 274 100 36 chr6 122742577 122742714 -66536840 - L1ME LINE L1 -4632 1629 1502 3392 108 10 6 chr6 122742714 122743221 -66536333 - MER9 LTR ERVK 0 511 3 2415 274 100 36 chr6 122743221 122744444 -66535110 - L1ME LINE L1 -4759 1502 28 180 226 0 0 chr6 122744908 122744970 -66534584 + T-rich Low_complexity Low_complexity 5 66 0 30 0 0 0 chr6 122745149 122745179 -66534375 + AT_rich Low_complexity Low_complexity 1 30 0 1735 142 36 11 chr6 122745185 122745459 -66534095 - AluSx SINE Alu -31 281 1 282 215 58 33 chr6 122745774 122745895 -66533659 - L1 LINE L1 -2147 3999 3876 23 0 0 0 chr6 122745902 122745925 -66533629 + AT_rich Low_complexity Low_complexity 1 23 0 2499 73 3 0 chr6 122746115 122746417 -66533137 + AluSp SINE Alu 1 303 -10 1038 207 6 0 chr6 122746824 122746993 -66532561 - FAM SINE Alu -4 171 2 13826 151 13 46 chr6 122747317 122749104 -66530450 + L1PA15-16 LINE L1 5 1849 -5000 2002 140 3 22 chr6 122749104 122749419 -66530135 + AluSx SINE Alu 1 309 -3 13826 151 13 46 chr6 122749419 122749542 -66530012 + L1PA15-16 LINE L1 1849 1974 -4875 201 74 0 0 chr6 122749542 122749569 -66529985 + (TAA)n Simple_repeat Simple_repeat 1 27 0 13826 151 13 46 chr6 122749569 122749795 -66529759 + L1PA15-16 LINE L1 1974 2206 -4643 2118 115 4 0 chr6 122749795 122750073 -66529481 + AluSx SINE Alu 1 279 -33 249 57 0 0 chr6 122750075 122750110 -66529444 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 13826 151 13 46 chr6 122750110 122751830 -66527724 + L1PA15-16 LINE L1 2207 3534 -3315 12643 156 14 47 chr6 122801834 122803646 -66475908 - L1PA15-16 LINE L1 -3223 3626 1756 249 57 0 0 chr6 122803646 122803681 -66475873 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2119 115 4 0 chr6 122803683 122803961 -66475593 - AluSx SINE Alu -33 279 1 12643 156 14 47 chr6 122803961 122804187 -66475367 - L1PA15-16 LINE L1 -5094 1755 1523 201 74 0 0 chr6 122804187 122804214 -66475340 + (TTA)n Simple_repeat Simple_repeat 1 27 0 12643 156 14 47 chr6 122804214 122804337 -66475217 - L1PA15-16 LINE L1 -5326 1523 1398 2016 140 3 22 chr6 122804337 122804652 -66474902 - AluSx SINE Alu -3 309 1 12643 156 14 47 chr6 122804652 122806439 -66473115 - L1PA15-16 LINE L1 -5451 1398 5 945 213 6 0 chr6 122806763 122806932 -66472622 + FAM SINE Alu 2 171 -4 2502 73 3 0 chr6 122807339 122807642 -66471912 - AluSp SINE Alu -9 304 1 23 0 0 0 chr6 122807832 122807855 -66471699 + AT_rich Low_complexity Low_complexity 1 23 0 266 211 14 0 chr6 122807862 122807933 -66471621 + L1 LINE L1 3876 3947 -2199 1749 142 36 11 chr6 122808394 122808668 -66470886 + AluSx SINE Alu 1 281 -31 30 0 0 0 chr6 122808674 122808704 -66470850 + AT_rich Low_complexity Low_complexity 1 30 0 180 226 0 0 chr6 122808883 122808945 -66470609 + A-rich Low_complexity Low_complexity 5 66 0 2106 278 105 36 chr6 122809428 122810634 -66468920 + L1ME LINE L1 47 1168 -5093 3404 108 10 6 chr6 122810634 122811141 -66468413 + MER9 LTR ERVK 3 511 0 2106 278 105 36 chr6 122811141 122811278 -66468276 + L1ME LINE L1 1168 1294 -4967 1716 186 3 10 chr6 122811278 122811574 -66467980 + AluJo SINE Alu 10 303 -9 2106 278 105 36 chr6 122811574 122811622 -66467932 + L1ME LINE L1 1294 1337 -4924 2138 124 3 0 chr6 122811622 122811933 -66467621 + AluSq SINE Alu 3 314 0 2106 278 105 36 chr6 122811933 122812653 -66466901 + L1ME LINE L1 1337 2344 -3917 30 0 0 0 chr6 122813339 122813369 -66466185 + AT_rich Low_complexity Low_complexity 1 30 0 20005 52 5 0 chr6 122813663 122816333 -66463221 - L1P LINE L1 -2841 3305 623 628 95 0 0 chr6 122816331 122816426 -66463128 - L1P LINE L1 -6048 98 4 * 2682 190 10 61 chr6 122816434 122817222 -66462332 - L1P5 LINE L1 -372 5779 5033 1613 146 80 47 chr6 122817222 122817584 -66461970 + Tigger4(Zombi) DNA MER2_type 2055 2428 -303 534 118 0 0 chr6 122817544 122817620 -66461934 + U6 snRNA snRNA 1 76 -31 * 1493 102 25 0 chr6 122817652 122817888 -66461666 + Tigger4(Zombi) DNA MER2_type 2379 2620 -111 553 270 6 0 chr6 122819298 122819461 -66460093 - L1MA10 LINE L1 -2 6332 6169 307 212 24 0 chr6 122819499 122819584 -66459970 + CT-rich Low_complexity Low_complexity 1 87 0 231 315 77 21 chr6 122820498 122820641 -66458913 + L2 LINE L2 3162 3312 -1 2435 92 0 0 chr6 122821183 122821489 -66458065 - AluSg SINE Alu -4 306 1 1929 19 0 0 chr6 122821865 122822078 -66457476 + AluYb8 SINE Alu 96 308 -10 957 158 24 0 chr6 122822078 122822243 -66457311 + AluSg/x SINE Alu 134 302 -10 495 69 92 17 chr6 122822326 122822619 -66456935 + (TA)n Simple_repeat Simple_repeat 1 315 0 5618 154 13 31 chr6 122822705 122823092 -66456462 + L1MA2 LINE L1 3877 4269 -2035 2073 153 3 0 chr6 122823092 122823400 -66456154 + AluJb SINE Alu 1 309 -3 5618 154 13 31 chr6 122823400 122823417 -66456137 + L1MA2 LINE L1 4269 4285 -2019 294 167 0 0 chr6 122823417 122823471 -66456083 - FLAM_A SINE Alu -77 55 2 5618 154 13 31 chr6 122823471 122823684 -66455870 + L1MA2 LINE L1 4285 4500 -1804 2377 98 0 0 chr6 122823684 122823991 -66455563 + AluSc SINE Alu 1 307 -2 5618 154 13 31 chr6 122823991 122825563 -66453991 + L1MA2 LINE L1 4500 6016 -288 5771 111 11 16 chr6 122825670 122826981 -66452573 + L1PA16 LINE L1 4294 5606 -560 2137 107 38 3 chr6 122826981 122827271 -66452283 + AluSx SINE Alu 1 300 -12 5771 111 11 16 chr6 122827271 122827829 -66451725 + L1PA16 LINE L1 5606 6166 0 23 33 0 0 chr6 122827830 122827860 -66451694 + AT_rich Low_complexity Low_complexity 1 30 0 2288 111 0 0 chr6 122828231 122828529 -66451025 + AluSg SINE Alu 1 298 -12 2070 136 10 0 chr6 122829128 122829423 -66450131 + AluSx SINE Alu 1 298 -14 5514 165 26 6 chr6 122829436 122829817 -66449737 + L1PB3 LINE L1 4492 4864 -1290 2667 84 19 6 chr6 122829817 122830176 -66449378 + THE1B LTR MaLR 1 364 0 5514 165 26 6 chr6 122830176 122831418 -66448136 + L1PB3 LINE L1 4864 6152 -2 423 318 21 64 chr6 122831481 122831552 -66448002 + L1MC/D LINE L1 5566 5639 -2169 2293 119 3 0 chr6 122831552 122831855 -66447699 + AluSx SINE Alu 1 304 -8 423 318 21 64 chr6 122831855 122832016 -66447538 + L1MC/D LINE L1 5639 5788 -2020 1266 162 61 9 chr6 122832054 122832282 -66447272 + AluJo SINE Alu 71 310 -2 837 136 45 8 chr6 122832636 122832768 -66446786 - AluJo SINE Alu -175 137 1 38919 65 6 3 chr6 122832788 122838908 -66440646 - L1PA5 LINE L1 -1 6153 13 465 314 136 31 chr6 122839022 122839375 -66440179 - HAL1b LINE L1 -628 720 331 2147 102 14 14 chr6 122839406 122839700 -66439854 - AluSq SINE Alu -19 294 1 461 300 142 0 chr6 122840448 122840765 -66438789 - L1ME4a LINE L1 -4 6117 5756 183 80 0 0 chr6 122840880 122840905 -66438649 + (A)n Simple_repeat Simple_repeat 1 25 0 628 304 81 32 chr6 122840927 122841296 -66438258 + L1MEc LINE L1 18 404 -5992 342 108 21 15 chr6 122841524 122841598 -66437956 + Alu SINE Alu 236 301 -1 542 221 100 13 chr6 122841598 122841829 -66437725 + L1MEc LINE L1 681 931 -5465 2562 202 51 38 chr6 122841835 122842016 -66437538 + L1MDa LINE L1 18 195 -6345 1553 184 7 33 chr6 122842016 122842315 -66437239 - AluJo SINE Alu -10 302 12 2562 202 51 38 chr6 122842315 122842915 -66436639 + L1MDa LINE L1 195 1023 -5517 225 150 0 0 chr6 122842933 122842973 -66436581 + LTR54 LTR ERV1 410 449 -61 2199 107 0 0 chr6 122842985 122843265 -66436289 + AluSx SINE Alu 1 280 -32 183 80 0 0 chr6 122843265 122843290 -66436264 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 4148 161 4 35 chr6 122843292 122844076 -66435478 + L1MB3 LINE L1 5374 6132 -51 2034 143 0 3 chr6 122844076 122844363 -66435191 + AluJb SINE Alu 1 286 -26 4148 161 4 35 chr6 122844363 122844412 -66435142 + L1MB3 LINE L1 6132 6181 -2 762 175 85 14 chr6 122844415 122844626 -66434928 + L1MDa LINE L1 1007 1232 -5308 189 107 0 0 chr6 122846077 122846105 -66433449 + (T)n Simple_repeat Simple_repeat 1 28 0 235 135 0 0 chr6 122846243 122846280 -66433274 - Alu SINE Alu -84 218 182 202 169 90 11 chr6 122848133 122848222 -66431332 + (TTTAA)n Simple_repeat Simple_repeat 5 100 0 908 237 33 0 chr6 122850152 122850363 -66429191 - MER58A DNA MER1_type -3 221 4 1985 81 4 0 chr6 122850484 122850759 -66428795 + AluY SINE Alu 37 312 0 2056 95 0 0 chr6 122850958 122851221 -66428333 - AluSq SINE Alu -50 263 1 1952 127 28 3 chr6 122851236 122851558 -66427996 - MER49 LTR ERV1 -9 914 585 334 306 188 50 chr6 122851564 122852100 -66427454 + L2 LINE L2 2246 2855 -459 689 227 196 0 chr6 122852370 122852590 -66426964 - LTR53 LTR ERVL 0 519 257 1384 156 5 0 chr6 122852733 122852944 -66426610 + AluJo SINE Alu 1 212 -100 186 261 70 87 chr6 122853133 122853248 -66426306 + L2 LINE L2 3160 3272 0 * 405 333 17 17 chr6 122853230 122853347 -66426207 - L2 LINE L2 -1 3271 3155 2232 112 0 0 chr6 122853484 122853771 -66425783 - AluSc SINE Alu -22 287 1 768 200 6 38 chr6 122854014 122854174 -66425380 + MIR SINE MIR 30 184 -78 2010 133 0 4 chr6 122854305 122854584 -66424970 - AluSx SINE Alu -34 278 1 1176 189 11 28 chr6 122854627 122854913 -66424641 - L1ME1 LINE L1 -185 5981 5701 22 0 0 0 chr6 122855223 122855245 -66424309 + AT_rich Low_complexity Low_complexity 1 22 0 1948 170 3 3 chr6 122855526 122855838 -66423716 - AluJb SINE Alu 0 312 1 459 167 0 0 chr6 122855897 122855987 -66423567 + GA-rich Low_complexity Low_complexity 1 90 0 1474 159 56 8 chr6 122856015 122856149 -66423405 - AluJb SINE Alu -48 264 138 260 83 21 0 chr6 122856149 122856197 -66423357 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 1474 159 56 8 chr6 122856197 122856314 -66423240 - AluJb SINE Alu -174 138 1 1257 112 8 50 chr6 122856604 122856617 -66422937 - L1MA2 LINE L1 -11 6293 6281 2283 113 0 3 chr6 122856617 122856927 -66422627 - AluSx SINE Alu -3 309 1 1257 112 8 50 chr6 122856927 122857155 -66422399 - L1MA2 LINE L1 -23 6281 6062 2292 95 0 52 chr6 122857156 122857339 -66422215 - AluSx SINE Alu -4 308 148 1664 85 5 9 chr6 122857339 122857551 -66422003 - AluSx SINE Alu -88 224 14 2292 95 0 52 chr6 122857551 122857692 -66421862 - AluSx SINE Alu -164 148 1 4826 73 40 11 chr6 122857693 122858414 -66421140 - MER41-int LTR ERV1 -568 5378 4637 1583 149 4 0 chr6 122858433 122858661 -66420893 - AluSx SINE Alu -83 229 1 772 163 0 22 chr6 122858661 122858796 -66420758 - AluJo/FLAM SINE Alu -170 132 1 262 203 94 0 chr6 122858796 122858860 -66420694 - FLAM_A SINE Alu -47 86 17 1093 122 12 29 chr6 122860847 122861019 -66418535 - AluJb SINE Alu -24 288 120 800 143 0 0 chr6 122861063 122861182 -66418372 - AluJb SINE Alu -193 119 1 1996 149 16 0 chr6 122861345 122861653 -66417901 - AluSq SINE Alu 0 313 1 190 286 18 0 chr6 122861666 122861722 -66417832 - MIR3 SINE MIR -3 205 149 382 330 50 22 chr6 122861753 122861932 -66417622 - L3 LINE CR1 -146 1431 1248 222 118 0 0 chr6 122861941 122861975 -66417579 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 281 318 54 8 chr6 122862171 122862300 -66417254 - L3 LINE CR1 -396 1181 1047 2236 122 0 10 chr6 122862450 122862761 -66416793 - AluSg SINE Alu -2 308 1 24 32 0 0 chr6 122862761 122862792 -66416762 + AT_rich Low_complexity Low_complexity 1 31 0 1427 165 5 0 chr6 122862847 122863071 -66416483 - AluJb SINE Alu 0 312 88 1271 216 99 0 chr6 122863075 122863551 -66416003 - L1ME LINE L1 -455 5707 5188 1747 178 0 3 chr6 122863608 122863895 -66415659 - AluJo SINE Alu -22 290 5 21 36 0 0 chr6 122863944 122863972 -66415582 + AT_rich Low_complexity Low_complexity 1 28 0 878 187 0 0 chr6 122863972 122864106 -66415448 - FRAM SINE Alu -22 154 21 2020 126 0 11 chr6 122864134 122864455 -66415099 - AluSx SINE Alu 0 318 1 1393 206 109 16 chr6 122864456 122864898 -66414656 - L1ME LINE L1 -979 5167 4685 581 149 18 9 chr6 122864915 122865029 -66414525 + Charlie5 DNA MER1_type 13 127 -2485 1000 146 53 18 chr6 122865055 122865281 -66414273 + Charlie5 DNA MER1_type 2244 2477 -135 1383 215 42 20 chr6 122865305 122865663 -66413891 - LTR40a LTR ERVL 0 519 154 1533 156 27 0 chr6 122865667 122866019 -66413535 - L1M4 LINE L1 -621 5553 5195 1732 168 3 16 chr6 122866021 122866325 -66413229 - AluSx SINE Alu -10 302 3 328 295 84 32 chr6 122866672 122866862 -66412692 + L2 LINE L2 2383 2582 -732 718 225 51 17 chr6 122866882 122867060 -66412494 - MER20 DNA MER1_type -35 184 1 668 248 81 64 chr6 122867066 122867425 -66412129 + L2 LINE L2 2577 2941 -373 378 0 0 0 chr6 122867465 122867507 -66412047 + (TAGA)n Simple_repeat Simple_repeat 2 43 0 243 0 0 0 chr6 122867508 122867535 -66412019 + (CAGC)n Simple_repeat Simple_repeat 1 27 0 2213 105 3 3 chr6 122867545 122867840 -66411714 + AluSx SINE Alu 1 295 -17 223 314 0 0 chr6 122868041 122868092 -66411462 + MIR SINE MIR 37 87 -121 339 255 179 0 chr6 122868102 122868286 -66411268 - L1ME1 LINE L1 -17 6149 5933 756 303 116 22 chr6 122868862 122869232 -66410322 + L3 LINE CR1 353 757 -820 256 61 0 61 chr6 122869256 122869305 -66410249 + (TAAAAA)n Simple_repeat Simple_repeat 3 48 0 319 336 25 8 chr6 122869372 122869491 -66410063 + L3 LINE CR1 842 962 -615 415 241 112 17 chr6 122869506 122869622 -66409932 + L2 LINE L2 1858 1984 -1330 1445 222 115 49 chr6 122869629 122870201 -66409353 + L2 LINE L2 2140 2749 -565 957 285 30 47 chr6 122870164 122870529 -66409025 - L2 LINE L2 -5 3308 2950 * 22 0 0 0 chr6 122871601 122871623 -66407931 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr6 122872568 122872590 -66406964 + (T)n Simple_repeat Simple_repeat 1 22 0 984 152 29 0 chr6 122874059 122874230 -66405324 + L1PA13 LINE L1 5984 6159 -4 24 0 0 0 chr6 122874398 122874422 -66405132 + AT_rich Low_complexity Low_complexity 1 24 0 576 296 76 0 chr6 122874693 122874865 -66404689 + MIR SINE MIR 4 188 -74 329 268 90 38 chr6 122875074 122875251 -66404303 + L1MC/D LINE L1 5291 5471 -712 689 259 81 48 chr6 122875414 122875723 -66403831 - L2 LINE L2 0 3313 2995 4014 120 10 46 chr6 122875796 122876496 -66403058 - MER54B LTR ERVL -118 675 1 297 211 22 33 chr6 122877273 122877363 -66402191 + MLT1L LTR MaLR 526 614 -1 706 237 93 23 chr6 122878250 122878507 -66401047 + ORSL DNA AcHobo 1 275 0 2365 90 3 6 chr6 122878621 122878932 -66400622 + AluSq SINE Alu 1 310 -3 212 333 8 60 chr6 122879712 122879829 -66399725 - MIR3 SINE MIR -4 204 94 405 225 0 0 chr6 122879938 122880018 -66399536 - MER58 DNA MER1_type -1 2419 2340 213 39 0 0 chr6 122880020 122880046 -66399508 + (TTC)n Simple_repeat Simple_repeat 2 27 0 1487 178 35 38 chr6 122880074 122880361 -66399193 + AluJo SINE Alu 1 286 -26 243 146 0 0 chr6 122880363 122880404 -66399150 + (TG)n Simple_repeat Simple_repeat 2 42 0 23 54 0 0 chr6 122881802 122881839 -66397715 + AT_rich Low_complexity Low_complexity 1 37 0 211 278 0 56 chr6 122882137 122882209 -66397345 - L2 LINE L2 -15 3298 3231 868 134 0 8 chr6 122882214 122882348 -66397206 + FLAM_C SINE Alu 1 133 0 1130 198 0 35 chr6 122882608 122882835 -66396719 + Tigger7 DNA MER2_type 40 258 -2229 475 111 111 33 chr6 122882834 122882850 -66396704 + Tigger7 DNA MER2_type 2391 2404 -83 * 2272 109 16 0 chr6 122882850 122883153 -66396401 + AluSq SINE Alu 1 308 -5 475 111 111 33 chr6 122883153 122883226 -66396328 + Tigger7 DNA MER2_type 2404 2487 0 1949 150 18 28 chr6 122883797 122883999 -66395555 + L1MB3 LINE L1 5401 5599 -584 2104 152 0 3 chr6 122883999 122884301 -66395253 + AluJo SINE Alu 1 301 -11 1949 150 18 28 chr6 122884301 122884498 -66395056 + L1MB3 LINE L1 5599 5796 -387 958 209 98 32 chr6 122884501 122884592 -66394962 - MER2 DNA MER2_type 0 345 262 1805 168 0 11 chr6 122884592 122884878 -66394676 + AluJb SINE Alu 4 286 -26 958 209 98 32 chr6 122884878 122885101 -66394453 - MER2 DNA MER2_type -83 262 10 1785 144 12 81 chr6 122885102 122885512 -66394042 + L1MB3 LINE L1 5799 6180 -3 280 259 47 0 chr6 122885529 122885614 -66393940 + L1M4 LINE L1 4013 4101 -2045 618 163 24 0 chr6 122885615 122885738 -66393816 + L1MB4 LINE L1 6054 6179 -1 1248 207 43 9 chr6 122885757 122886080 -66393474 + L1M4 LINE L1 4015 4348 -1798 2346 157 59 13 chr6 122886080 122886540 -66393014 + MER7C DNA MER2_type 12 492 -110 39 22 0 0 chr6 122887101 122887147 -66392407 + AT_rich Low_complexity Low_complexity 1 46 0 442 73 0 0 chr6 122887151 122887206 -66392348 - FLAM SINE Alu -26 117 63 1649 106 109 4 chr6 122887209 122887515 -66392039 - AluSx SINE Alu 0 333 1 1886 166 3 7 chr6 122887526 122887822 -66391732 - AluJb SINE Alu -17 295 1 2063 151 0 3 chr6 122887956 122888254 -66391300 - AluJb SINE Alu -15 297 1 2405 72 7 0 chr6 122889078 122889385 -66390169 + AluY SINE Alu 1 309 -2 28 0 0 0 chr6 122889614 122889642 -66389912 + AT_rich Low_complexity Low_complexity 1 28 0 1921 151 35 8 chr6 122890620 122890788 -66388766 + L1MB3 LINE L1 5795 5957 -226 1833 181 0 16 chr6 122890788 122891098 -66388456 + AluJo SINE Alu 1 305 -7 1921 151 35 8 chr6 122891098 122891299 -66388255 + L1MB3 LINE L1 5957 6174 -9 190 386 34 0 chr6 122891352 122891440 -66388114 + MIR SINE MIR 2 92 -170 506 286 98 57 chr6 122891446 122891813 -66387741 + HAL1 LINE L1 586 967 -1540 1481 185 88 0 chr6 122891819 122892079 -66387475 + AluJb SINE Alu 1 283 -29 548 171 0 0 chr6 122892207 122892295 -66387259 + FLAM SINE Alu 38 125 -18 229 169 169 0 chr6 122892309 122892368 -66387186 + HAL1 LINE L1 1560 1628 -879 322 319 147 47 chr6 122892409 122892600 -66386954 + HAL1 LINE L1 1731 1940 -567 1529 151 72 69 chr6 122892847 122893043 -66386511 - AluJo SINE Alu -7 305 105 2104 109 7 3 chr6 122893043 122893351 -66386203 + AluSx SINE Alu 1 309 0 1529 151 72 69 chr6 122893351 122893457 -66386097 - AluJo SINE Alu -207 105 1 1980 114 59 0 chr6 122894108 122894397 -66385157 + AluSx SINE Alu 1 306 -6 204 200 50 17 chr6 122894468 122894528 -66385026 + (TTATA)n Simple_repeat Simple_repeat 2 63 0 282 269 207 24 chr6 122895167 122895517 -66384037 + LTR33 LTR ERVL 45 513 -8 357 342 17 8 chr6 122895804 122895924 -66383630 + MIR SINE MIR 17 137 -71 262 220 133 41 chr6 122896087 122896305 -66383249 + L1M4 LINE L1 2606 2843 -3303 2200 92 3 7 chr6 122896805 122897088 -66382466 + AluSx SINE Alu 15 296 -16 3600 87 34 14 chr6 122897186 122897692 -66381862 + L1MA1 LINE L1 5787 6302 0 2015 107 43 0 chr6 122897717 122897997 -66381557 + AluSg SINE Alu 10 301 -9 1851 152 39 0 chr6 122898018 122898301 -66381253 + AluSx SINE Alu 3 296 -16 248 315 130 0 chr6 122898389 122898497 -66381057 + L1MC/D LINE L1 5397 5518 -2290 355 205 0 39 chr6 122898497 122898575 -66380979 + AluS SINE Alu 223 297 -3 809 193 0 0 chr6 122898821 122898961 -66380593 + FLAM_C SINE Alu 1 140 -3 501 205 94 0 chr6 122898962 122899079 -66380475 + MER103 DNA DNA 39 166 0 1920 156 0 0 chr6 122899255 122899544 -66380010 - AluJb SINE Alu -15 297 9 331 269 170 14 chr6 122899906 122900047 -66379507 - L2 LINE L2 -1 3271 3109 832 232 48 0 chr6 122900147 122900315 -66379239 + MER119 DNA MER1_type 24 199 -384 619 156 31 0 chr6 122900315 122900411 -66379143 + FLAM_A SINE Alu 18 116 -26 370 94 0 0 chr6 122900426 122900479 -66379075 - MER53 DNA DNA -136 53 1 548 249 80 9 chr6 122900483 122900696 -66378858 + L1MC4 LINE L1 7742 7969 -73 248 169 0 108 chr6 122902086 122902151 -66377403 - L2 LINE L2 -1 3271 3214 1640 167 85 0 chr6 122902186 122902468 -66377086 + AluSx SINE Alu 1 306 -6 212 370 101 27 chr6 122902554 122902773 -66376781 - L2 LINE L2 -373 2941 2707 885 163 0 0 chr6 122903201 122903330 -66376224 - FLAM_C SINE Alu -4 129 1 1882 140 11 0 chr6 122903436 122903746 -66375808 + AluSx SINE Alu 2 314 0 225 243 95 27 chr6 122903983 122904057 -66375497 - L1ME LINE L1 -353 5811 5733 234 221 44 0 chr6 122904072 122904140 -66375414 - L1ME LINE L1 -837 5333 5263 822 155 0 16 chr6 122904150 122904279 -66375275 - FLAM_C SINE Alu -16 127 1 422 262 5 64 chr6 122904279 122904318 -66375236 - L1ME LINE L1 -865 5281 5241 2397 75 3 0 chr6 122904318 122904612 -66374942 - AluSx SINE Alu -17 295 1 422 262 5 64 chr6 122904612 122904759 -66374795 - L1ME LINE L1 -905 5241 5106 1634 173 38 3 chr6 122904834 122905123 -66374431 + AluJb SINE Alu 1 299 -13 267 263 101 11 chr6 122905134 122905304 -66374250 - L1ME LINE L1 -1070 5076 4883 632 211 98 0 chr6 122905546 122905679 -66373875 + MER58A DNA MER1_type 1 146 0 1734 161 14 0 chr6 122906423 122906734 -66372820 - AluJo SINE Alu 0 315 1 356 122 0 0 chr6 122906807 122906856 -66372698 - MSTC LTR MaLR 0 428 380 180 0 0 0 chr6 122906871 122906891 -66372663 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1608 99 19 0 chr6 122907266 122907479 -66372075 + AluSg SINE Alu 1 217 -93 2414 88 0 0 chr6 122907662 122907959 -66371595 + AluSx SINE Alu 1 297 -15 809 134 8 0 chr6 122908021 122908140 -66371414 + FLAM_C SINE Alu 1 120 -23 341 115 0 16 chr6 122908140 122908201 -66371353 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 1499 150 4 32 chr6 122908599 122908866 -66370688 + AluJb SINE Alu 42 301 0 202 212 12 35 chr6 122909038 122909123 -66370431 + (TA)n Simple_repeat Simple_repeat 2 84 0 2245 177 0 5 chr6 122909544 122909911 -66369643 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr6 122910085 122910106 -66369448 + AT_rich Low_complexity Low_complexity 1 21 0 790 177 7 41 chr6 122910147 122910294 -66369260 - FLAM_C SINE Alu 0 143 2 2258 78 42 0 chr6 122910299 122910583 -66368971 - AluSx SINE Alu -16 296 1 1498 192 14 14 chr6 122910890 122911182 -66368372 + AluJo SINE Alu 1 292 -20 1895 149 21 7 chr6 122911184 122911473 -66368081 + AluSx SINE Alu 1 293 -19 2133 138 0 0 chr6 122911475 122911773 -66367781 + AluSx SINE Alu 1 298 -14 2160 120 3 7 chr6 122912268 122912568 -66366986 + AluSx SINE Alu 1 299 -13 1999 135 10 0 chr6 122913600 122913889 -66365665 + AluSx SINE Alu 1 292 -20 1412 233 88 70 chr6 122914649 122915053 -66364501 + MLT1J LTR MaLR 4 420 -91 1764 133 0 82 chr6 122915053 122915370 -66364184 + AluJo SINE Alu 1 291 -21 1412 233 88 70 chr6 122915370 122915464 -66364090 + MLT1J LTR MaLR 420 511 0 848 275 42 8 chr6 122915611 122915851 -66363703 + MER21B LTR ERV1 1 248 -615 1068 223 53 44 chr6 122915924 122916242 -66363312 + MER21B LTR ERV1 418 738 -125 3614 145 40 2 chr6 122916494 122917073 -66362481 + LTR39 LTR ERV1 7 607 -176 307 146 0 0 chr6 122917376 122917424 -66362130 + MER68 LTR ERV1 1 48 -514 198 0 0 0 chr6 122917444 122917466 -66362088 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1084 192 0 0 chr6 122917488 122917660 -66361894 + FAM SINE Alu 1 172 -3 1508 151 0 119 chr6 122917682 122918001 -66361553 + AluJb SINE Alu 1 281 -31 180 0 0 0 chr6 122918006 122918026 -66361528 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2062 190 63 124 chr6 122919374 122920090 -66359464 + LTR8A LTR ERV1 34 705 -22 815 127 61 50 chr6 122920292 122920429 -66359125 + L1MA7 LINE L1 6101 6242 -49 2505 60 3 0 chr6 122920429 122920727 -66358827 + AluY SINE Alu 1 299 -12 815 127 61 50 chr6 122920727 122920770 -66358784 + L1MA7 LINE L1 6242 6283 -8 2861 10 0 0 chr6 122920852 122921161 -66358393 - AluYa5 SINE Alu -2 309 1 1655 168 10 10 chr6 122921204 122921495 -66358059 - AluJb SINE Alu -21 291 1 843 195 71 7 chr6 122921526 122921680 -66357874 + FRAM SINE Alu 1 164 -2 293 255 235 10 chr6 122921717 122921819 -66357735 + MER5A DNA MER1_type 65 189 0 323 352 46 47 chr6 122921847 122922082 -66357472 - L2 LINE L2 -254 3059 2821 1691 136 9 121 chr6 122922082 122922412 -66357142 + AluSx SINE Alu 1 293 -9 323 352 46 47 chr6 122922412 122922498 -66357056 - L2 LINE L2 -492 2821 2736 1981 118 3 20 chr6 122922566 122922870 -66356684 + AluSx SINE Alu 6 304 -8 2095 117 0 49 chr6 122923002 122923328 -66356226 - AluSq SINE Alu -3 310 1 1897 163 3 10 chr6 122923421 122923734 -66355820 + AluJb SINE Alu 1 311 -1 942 204 0 5 chr6 122923817 122924003 -66355551 - MIR SINE MIR -10 252 68 230 204 252 19 chr6 122924114 122924217 -66355337 + MLT1L LTR MaLR 157 283 -332 868 213 0 41 chr6 122924325 122924494 -66355060 + FRAM SINE Alu 1 162 -4 1593 152 18 70 chr6 122924675 122925003 -66354551 - AluJo SINE Alu -1 311 1 21 21 0 64 chr6 122925077 122925096 -66354458 + AT_rich Low_complexity Low_complexity 1 20 -24 2161 113 0 0 chr6 122925096 122925403 -66354151 + AluSx SINE Alu 1 307 0 21 21 0 64 chr6 122925403 122925429 -66354125 + AT_rich Low_complexity Low_complexity 20 44 0 220 330 10 50 chr6 122925488 122925588 -66353966 - L2 LINE L2 -9 3263 3168 855 164 0 8 chr6 122925600 122925777 -66353777 + FLAM_A SINE Alu 1 176 0 296 342 56 31 chr6 122925840 122926216 -66353338 - L2 LINE L2 -165 3107 2721 1716 168 3 16 chr6 122926384 122926688 -66352866 + AluSx SINE Alu 3 302 -10 1671 156 27 0 chr6 122926690 122927042 -66352512 + L1M4 LINE L1 5195 5553 -621 1523 215 42 20 chr6 122927046 122927404 -66352150 + LTR40a LTR ERVL 154 519 0 1114 146 53 18 chr6 122927428 122927654 -66351900 - Charlie5 DNA MER1_type -135 2477 2244 639 149 18 9 chr6 122927680 122927794 -66351760 - Charlie5 DNA MER1_type -2485 127 13 1588 206 109 16 chr6 122927811 122928253 -66351301 + L1ME LINE L1 4685 5167 -979 2040 122 0 11 chr6 122928254 122928575 -66350979 + AluSx SINE Alu 1 318 0 864 187 0 0 chr6 122928603 122928737 -66350817 + FRAM SINE Alu 21 154 -22 21 36 0 0 chr6 122928737 122928765 -66350789 + AT_rich Low_complexity Low_complexity 1 28 0 1730 178 0 3 chr6 122928814 122929101 -66350453 + AluJo SINE Alu 5 290 -22 1395 221 57 4 chr6 122929158 122929634 -66349920 + L1ME LINE L1 5188 5713 -457 1417 155 4 9 chr6 122929638 122929864 -66349690 + AluJb SINE Alu 88 312 0 2221 122 0 10 chr6 122929949 122930260 -66349294 + AluSg SINE Alu 1 308 -2 269 318 54 8 chr6 122930410 122930539 -66349015 + L3 LINE CR1 1047 1181 -396 222 118 0 0 chr6 122930735 122930769 -66348785 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 364 330 50 22 chr6 122930778 122930957 -66348597 + L3 LINE CR1 1248 1431 -146 190 286 18 0 chr6 122930988 122931044 -66348510 + MIR3 SINE MIR 149 205 -3 1980 149 16 0 chr6 122931057 122931365 -66348189 + AluSq SINE Alu 1 313 0 800 143 0 0 chr6 122931528 122931647 -66347907 + AluJb SINE Alu 1 119 -193 1092 122 12 29 chr6 122931691 122931863 -66347691 + AluJb SINE Alu 120 288 -24 292 209 128 23 chr6 122933850 122933914 -66345640 + FLAM_A SINE Alu 17 73 -229 827 163 0 22 chr6 122933914 122934049 -66345505 + AluJo/FLAM SINE Alu 1 132 -170 1560 150 4 0 chr6 122934049 122934275 -66345279 + AluSx SINE Alu 1 227 -85 292 209 128 23 chr6 122934275 122934295 -66345259 + FLAM_A SINE Alu 72 111 -191 9382 83 25 16 chr6 122934296 122935018 -66344536 + MER41A-int LTR ERV1 4637 5378 -568 2200 105 14 3 chr6 122935018 122935314 -66344240 + AluSx SINE Alu 1 299 -13 9382 83 25 16 chr6 122935314 122935887 -66343667 + MER41A-int LTR ERV1 5378 5944 -2 1686 127 40 0 chr6 122935887 122936140 -66343414 + MER41A LTR ERV1 1 263 -291 2292 101 0 0 chr6 122936289 122936585 -66342969 + AluY SINE Alu 1 296 -15 191 36 36 0 chr6 122936725 122936753 -66342801 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 2076 126 0 10 chr6 122936813 122937107 -66342447 + AluSq SINE Alu 5 295 -18 782 197 0 0 chr6 122937462 122937594 -66341960 - FLAM_A SINE Alu 0 142 11 2530 78 0 0 chr6 122937975 122938282 -66341272 - AluSx SINE Alu -5 307 1 2339 108 0 0 chr6 122938695 122939000 -66340554 + AluSx SINE Alu 1 305 -7 328 282 282 0 chr6 122939113 122939315 -66340239 + MIR SINE MIR 3 261 -1 2167 125 0 13 chr6 122939375 122939688 -66339866 - AluJb SINE Alu -3 309 1 2171 122 3 3 chr6 122939854 122940166 -66339388 + AluSx SINE Alu 1 312 0 304 275 292 12 chr6 122940298 122940469 -66339085 + MIR SINE MIR 43 261 -1 249 143 36 179 chr6 122940497 122940609 -66338945 + L1MC/D LINE L1 5769 5864 -1944 23 0 0 0 chr6 122940904 122940927 -66338627 + AT_rich Low_complexity Low_complexity 1 23 0 274 294 165 18 chr6 122941296 122941405 -66338149 - L2 LINE L2 0 3272 3148 1656 136 94 3 chr6 122943030 122943316 -66336238 + AluJo SINE Alu 1 312 0 2161 104 7 3 chr6 122943327 122943625 -66335929 + AluSx SINE Alu 1 299 -13 309 99 56 14 chr6 122943630 122943701 -66335853 + G-rich Low_complexity Low_complexity 3 76 0 22 0 0 0 chr6 122943723 122943745 -66335809 + AT_rich Low_complexity Low_complexity 1 22 0 937 199 0 0 chr6 122943826 122944002 -66335552 - FAM SINE Alu 0 49 1 415 140 0 0 chr6 122944038 122944095 -66335459 - U6 snRNA snRNA 0 107 51 937 199 0 0 chr6 122944179 122944355 -66335199 - FAM SINE Alu 0 49 1 802 106 29 0 chr6 122944391 122944495 -66335059 - U6 snRNA snRNA 0 107 1 1651 159 53 20 chr6 122945665 122945967 -66333587 - AluJb SINE Alu 0 312 1 238 228 25 38 chr6 122945970 122946049 -66333505 + MIR SINE MIR 124 201 -61 617 139 99 0 chr6 122946136 122946237 -66333317 + FLAM_C SINE Alu 7 117 -26 240 35 0 0 chr6 122946237 122946266 -66333288 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1716 151 18 14 chr6 122946266 122946545 -66333009 - AluJb SINE Alu -32 280 1 24 0 0 0 chr6 122946548 122946572 -66332982 + AT_rich Low_complexity Low_complexity 1 24 0 1625 177 40 0 chr6 122946660 122946937 -66332617 - AluJb SINE Alu -23 289 2 2499 75 0 3 chr6 122947210 122947517 -66332037 - AluY SINE Alu -5 306 1 1020 277 9 16 chr6 122947583 122947901 -66331653 + L2 LINE L2 2367 2682 -632 3145 121 48 75 chr6 122947902 122948488 -66331066 + LTR8 LTR ERV1 2 571 -120 1354 146 32 14 chr6 122948487 122948707 -66330847 + LTR8 LTR ERV1 468 691 0 * 1333 258 54 36 chr6 122948722 122949319 -66330235 + L2 LINE L2 2698 3313 0 620 231 142 51 chr6 122949440 122949751 -66329803 - L1MA8 LINE L1 -25 6266 5928 921 180 12 12 chr6 122949752 122949913 -66329641 + FRAM SINE Alu 1 161 -15 864 134 8 8 chr6 122949920 122950054 -66329500 + AluJo SINE Alu 1 134 -178 1774 168 26 32 chr6 122950091 122950226 -66329328 - L1MA8 LINE L1 -376 5936 5802 2148 113 7 0 chr6 122950226 122950519 -66329035 + AluSq SINE Alu 1 295 -18 297 0 0 0 chr6 122950529 122950562 -66328992 + (TG)n Simple_repeat Simple_repeat 1 33 0 1774 168 26 32 chr6 122950562 122950755 -66328799 - L1MA8 LINE L1 -519 5793 5599 2076 131 7 13 chr6 122950763 122951068 -66328486 - AluJb SINE Alu 0 312 10 264 122 0 0 chr6 122951075 122951116 -66328438 - L1MA8 LINE L1 -553 5615 5575 817 147 0 0 chr6 122951338 122951454 -66328100 + FLAM_C SINE Alu 5 120 -23 189 0 0 0 chr6 122951455 122951476 -66328078 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1036 143 0 7 chr6 122951604 122951758 -66327796 - FRAM SINE Alu -6 170 18 2258 112 0 16 chr6 122952045 122952358 -66327196 - AluSg SINE Alu -2 308 1 261 139 0 0 chr6 122952360 122952403 -66327151 + (T)n Simple_repeat Simple_repeat 1 43 0 2389 109 0 0 chr6 122952405 122952717 -66326837 - AluSx SINE Alu 0 312 1 2312 76 0 0 chr6 122952899 122953175 -66326379 - AluSx SINE Alu -36 276 1 469 158 26 0 chr6 122953772 122953848 -66325706 + AluJ/FLAM SINE Alu 7 84 -228 29 21 0 21 chr6 122953848 122953876 -66325678 + AT_rich Low_complexity Low_complexity 1 29 -17 2134 122 6 10 chr6 122953876 122954187 -66325367 + AluSx SINE Alu 1 310 -2 29 21 0 21 chr6 122954187 122954205 -66325349 + AT_rich Low_complexity Low_complexity 29 46 0 1981 109 91 7 chr6 122954265 122954541 -66325013 + AluSx SINE Alu 1 299 -13 1598 181 7 21 chr6 122954661 122954949 -66324605 + AluJo SINE Alu 1 284 -28 198 71 0 0 chr6 122954952 122954980 -66324574 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 228 111 0 0 chr6 122956338 122956374 -66323180 + (TTA)n Simple_repeat Simple_repeat 1 36 0 806 211 6 0 chr6 122957346 122957517 -66322037 - MIR SINE MIR -18 244 73 21 0 0 0 chr6 122957584 122957605 -66321949 + AT_rich Low_complexity Low_complexity 1 21 0 2148 104 3 42 chr6 122957608 122957915 -66321639 + AluSq SINE Alu 1 295 -18 1899 142 0 29 chr6 122959246 122959555 -66319999 + AluJo SINE Alu 1 300 -12 193 250 0 0 chr6 122959620 122959664 -66319890 + L2 LINE L2 3247 3290 -23 534 194 188 7 chr6 122959824 122959968 -66319586 + MER5A DNA MER1_type 14 183 -6 1685 158 6 45 chr6 122959989 122960105 -66319449 + AluJo SINE Alu 11 130 -182 2417 92 0 0 chr6 122960105 122960399 -66319155 - AluSc SINE Alu -15 294 1 1685 158 6 45 chr6 122960399 122960593 -66318961 + AluJo SINE Alu 130 309 -3 828 260 0 26 chr6 122960947 122961139 -66318415 - LTR16B LTR ERVL -277 187 1 760 183 0 15 chr6 122961412 122961549 -66318005 + AluJo SINE Alu 2 136 -176 770 189 45 40 chr6 122961957 122962158 -66317396 - MER21B LTR ERV1 -113 750 549 829 118 38 143 chr6 122962247 122962394 -66317160 - LTR23 LTR ERV1 0 437 276 1383 163 54 32 chr6 122962394 122962699 -66316855 - AluJo SINE Alu 0 311 1 867 105 0 70 chr6 122962708 122962851 -66316703 - FLAM_C SINE Alu 0 133 1 829 118 38 143 chr6 122962851 122962929 -66316625 - LTR23 LTR ERV1 -169 268 226 955 183 6 0 chr6 122962929 122963098 -66316456 + AluJo SINE Alu 136 305 -7 929 135 40 0 chr6 122963098 122963246 -66316308 - LTR23 LTR ERV1 -210 227 74 1869 137 53 17 chr6 122963250 122963427 -66316127 - AluSx SINE Alu -2 310 116 2387 57 17 27 chr6 122963427 122963728 -66315826 - AluY SINE Alu -13 298 1 1869 137 53 17 chr6 122963728 122963849 -66315705 - AluSx SINE Alu -196 116 1 1804 157 3 39 chr6 122963996 122964308 -66315246 + AluJb SINE Alu 2 302 -10 432 101 58 0 chr6 122964325 122964394 -66315160 - LTR23 LTR ERV1 -364 73 1 687 258 73 17 chr6 122964401 122964634 -66314920 + L1MC/D LINE L1 5567 5812 -1996 519 117 0 55 chr6 122964719 122964882 -66314672 + (TA)n Simple_repeat Simple_repeat 2 155 0 4194 109 33 46 chr6 122965009 122965202 -66314352 - L1PA13 LINE L1 0 6163 5969 2522 47 7 7 chr6 122965202 122965499 -66314055 - AluY SINE Alu -14 297 1 4194 109 33 46 chr6 122965499 122965549 -66314005 - L1PA13 LINE L1 -194 5969 5920 2266 107 10 0 chr6 122965549 122965848 -66313706 - AluSq SINE Alu -11 302 1 4194 109 33 46 chr6 122965848 122966300 -66313254 - L1PA13 LINE L1 -243 5920 5476 6876 57 6 41 chr6 122966314 122968025 -66311529 - SVA Other Other -915 1381 50 230 0 0 32 chr6 122968026 122968057 -66311497 + (GGGAGA)n Simple_repeat Simple_repeat 2 31 0 217 211 123 44 chr6 122968236 122968350 -66311204 - L2 LINE L2 -1860 1454 1332 2212 109 10 10 chr6 122968363 122968675 -66310879 + AluSq SINE Alu 1 312 -1 3189 126 47 25 chr6 122968904 122969100 -66310454 + MER4B LTR ERV1 1 191 -588 2471 70 0 3 chr6 122969100 122969398 -66310156 + AluY SINE Alu 1 297 -14 3189 126 47 25 chr6 122969398 122969800 -66309754 + MER4B LTR ERV1 191 779 0 2072 146 0 0 chr6 122969949 122970237 -66309317 - AluSx SINE Alu -24 288 1 1386 89 0 0 chr6 122970249 122970418 -66309136 - AluSp SINE Alu -11 302 134 2174 117 3 7 chr6 122970761 122971060 -66308494 - AluSx SINE Alu -14 298 1 253 154 0 0 chr6 122971141 122971180 -66308374 + tRNA-Glu-GAG tRNA tRNA 1 39 -36 1565 180 80 0 chr6 122971320 122971609 -66307945 - AluJo SINE Alu 0 312 1 478 284 122 27 chr6 122971629 122971964 -66307590 - L1MC/D LINE L1 -2054 5754 5388 2349 76 7 7 chr6 122972330 122972631 -66306923 - AluSq SINE Alu -12 301 1 2429 76 0 3 chr6 122972664 122972966 -66306588 + AluSg SINE Alu 1 301 -9 313 293 113 42 chr6 122973035 122973417 -66306137 - L1MC/D LINE L1 -1554 4592 4184 187 330 155 26 chr6 122973780 122973974 -66305580 + L2 LINE L2 3095 3313 0 2563 66 3 0 chr6 122974021 122974324 -66305230 - AluSp SINE Alu -9 304 1 2338 99 3 6 chr6 122974379 122974692 -66304862 + AluSx SINE Alu 1 312 0 638 191 0 16 chr6 122974737 122974863 -66304691 + FLAM_C SINE Alu 3 126 -17 2348 84 7 3 chr6 122975085 122975384 -66304170 - AluSg SINE Alu -10 300 1 278 222 0 50 chr6 122976257 122976356 -66303198 + (CGG)n Simple_repeat Simple_repeat 1 94 0 471 89 89 44 chr6 122977501 122977591 -66301963 - L1MB2 LINE L1 -10 6161 6068 2244 90 7 0 chr6 122977729 122978028 -66301526 + AluSp SINE Alu 1 301 -12 1705 174 10 7 chr6 122978452 122978750 -66300804 + AluJb SINE Alu 1 299 -13 2460 81 0 0 chr6 122978785 122979083 -66300471 - AluSg SINE Alu -12 298 1 2455 94 0 0 chr6 122979270 122979577 -66299977 - AluSc SINE Alu -2 307 1 1521 186 24 7 chr6 122979734 122980024 -66299530 - AluJo SINE Alu -17 295 1 186 261 160 25 chr6 122980397 122980516 -66299038 + L3b LINE CR1 1128 1262 -321 395 197 111 34 chr6 122980689 122980806 -66298748 + MIR SINE MIR 119 244 -18 1898 157 0 3 chr6 122981019 122981313 -66298241 - AluJb SINE Alu -19 293 1 1695 180 10 13 chr6 122981610 122981921 -66297633 + AluJb SINE Alu 1 310 -2 373 343 102 50 chr6 122982292 122982694 -66296860 + L2 LINE L2 2832 3254 -18 329 286 105 9 chr6 122982681 122982786 -66296768 - MIR SINE MIR -124 138 24 * 1261 153 14 23 chr6 122982786 122983002 -66296552 - AluJb SINE Alu -22 290 77 2319 93 0 7 chr6 122983117 122983417 -66296137 - AluY SINE Alu -13 298 1 180 0 0 0 chr6 122983847 122983867 -66295687 + (A)n Simple_repeat Simple_repeat 1 20 0 638 174 37 0 chr6 122983894 122984003 -66295551 - FLAM_A SINE Alu -20 122 10 1528 142 9 0 chr6 122984323 122984548 -66295006 + AluSp SINE Alu 1 227 -86 562 159 23 0 chr6 122984772 122984860 -66294694 - 5S rRNA rRNA -31 90 1 1867 150 29 10 chr6 122985166 122985472 -66294082 - AluSx SINE Alu 0 312 1 251 246 140 0 chr6 122985784 122985841 -66293713 - MLT1J LTR MaLR -365 146 82 644 178 185 0 chr6 122986823 122986969 -66292585 + MER58A DNA MER1_type 46 218 -6 1980 146 0 14 chr6 122987050 122987345 -66292209 + AluSx SINE Alu 1 291 -21 1411 101 0 0 chr6 122987818 122987997 -66291557 - AluSc SINE Alu -8 301 123 638 219 0 32 chr6 122988061 122988184 -66291370 - FLAM_A SINE Alu -12 121 3 26 0 0 0 chr6 122988243 122988269 -66291285 + AT_rich Low_complexity Low_complexity 1 26 0 1092 165 0 0 chr6 122988336 122988500 -66291054 + FRAM SINE Alu 1 164 -2 199 306 108 27 chr6 122988909 122989020 -66290534 - L2 LINE L2 -12 3260 3141 29 28 0 0 chr6 122989251 122989287 -66290267 + AT_rich Low_complexity Low_complexity 1 36 0 954 101 14 36 chr6 122989306 122989445 -66290109 - AluJo SINE Alu -176 136 1 1385 163 42 101 chr6 122989579 122989885 -66289669 + AluJb SINE Alu 1 288 -24 1747 131 105 14 chr6 122989948 122990292 -66289262 - THE1C LTR MaLR 0 375 1 727 191 8 0 chr6 122990408 122990534 -66289020 + FRAM SINE Alu 20 146 -30 2113 108 13 29 chr6 122990640 122990947 -66288607 + AluSx SINE Alu 10 311 -1 7117 53 19 3 chr6 122990981 122992308 -66287246 + L1PA8 LINE L1 4815 6159 -13 1883 123 58 10 chr6 122992321 122992613 -66286941 + AluSx SINE Alu 1 306 -6 696 110 34 17 chr6 122992659 122992777 -66286777 + L1MB3 LINE L1 6056 6175 -8 1804 176 7 10 chr6 122992806 122993107 -66286447 + AluJb SINE Alu 1 300 -12 513 207 26 0 chr6 122993206 122993322 -66286232 - L1M4 LINE L1 -3766 3191 3073 1862 150 7 7 chr6 122993325 122993612 -66285942 - AluSx SINE Alu -25 287 1 243 214 29 14 chr6 122993612 122993682 -66285872 - L1M4 LINE L1 -4623 2515 2445 476 235 0 0 chr6 122993704 122993806 -66285748 - U13 snRNA snRNA -2 102 1 264 164 30 15 chr6 122993929 122993991 -66285563 - MLT1E1 LTR MaLR 0 624 561 927 191 17 17 chr6 122993991 122994164 -66285390 + FAM SINE Alu 1 173 -2 1750 216 216 12 chr6 122994198 122994698 -66284856 - MLT1E1 LTR MaLR -51 603 2 2091 231 90 40 chr6 122994698 122995756 -66283798 - L1M4 LINE L1 -4755 2204 1108 854 168 0 0 chr6 122995756 122995887 -66283667 - FLAM_C SINE Alu -2 131 1 2091 231 90 40 chr6 122995887 122995971 -66283583 - L1M4 LINE L1 -5851 1108 1030 2332 101 0 10 chr6 122996091 122996399 -66283155 - AluSg SINE Alu -4 306 2 2308 109 0 0 chr6 122996742 122997046 -66282508 + AluSq SINE Alu 1 304 -9 305 259 45 22 chr6 122997052 122997233 -66282321 - L1M4 LINE L1 -6348 507 11 305 286 60 30 chr6 122997511 122997644 -66281910 + MIR SINE MIR 5 141 -121 302 316 44 7 chr6 122997766 122997788 -66281766 - MIR SINE MIR -64 144 124 625 169 119 8 chr6 122997788 122997906 -66281648 - FLAM_C SINE Alu -1 132 2 302 316 44 7 chr6 122997906 122998030 -66281524 - MIR SINE MIR -84 124 16 2096 134 3 7 chr6 122998058 122998364 -66281190 + AluSx SINE Alu 1 305 -7 672 169 0 66 chr6 122998641 122998777 -66280777 - FLAM_A SINE Alu -6 127 1 1926 158 6 19 chr6 122999129 122999445 -66280109 - AluJb SINE Alu 0 312 1 2179 110 3 13 chr6 122999457 122999757 -66279797 - AluSq SINE Alu -16 297 1 2792 10 0 16 chr6 123000573 123000882 -66278672 + AluYa5 SINE Alu 1 304 -7 21 0 0 0 chr6 123000909 123000930 -66278624 + AT_rich Low_complexity Low_complexity 1 21 0 713 165 9 0 chr6 123000943 123001058 -66278496 - FLAM_C SINE Alu -26 117 2 1956 136 28 0 chr6 123001360 123001647 -66277907 - AluSx SINE Alu -17 295 1 358 284 152 33 chr6 123001747 123002059 -66277495 - MLT1G1 LTR MaLR 0 590 237 298 226 214 0 chr6 123002245 123002329 -66277225 + L1ME LINE L1 5558 5659 -462 252 355 21 0 chr6 123002386 123002479 -66277075 - MIR SINE MIR -164 98 4 27 49 0 0 chr6 123002533 123002574 -66276980 + AT_rich Low_complexity Low_complexity 1 41 0 202 172 31 62 chr6 123002669 123002686 -66276868 + (TA)n Simple_repeat Simple_repeat 2 18 -45 2130 113 7 0 chr6 123002686 123002990 -66276564 - AluSx SINE Alu 0 306 1 202 172 31 62 chr6 123002990 123003035 -66276519 + (TA)n Simple_repeat Simple_repeat 18 63 0 1596 85 0 0 chr6 123003523 123003722 -66275832 - AluSg/x SINE Alu -41 269 71 301 286 121 0 chr6 123003726 123003817 -66275737 + MER5B DNA MER1_type 1 102 -76 673 183 222 43 chr6 123005590 123005869 -66273685 + L1MC4 LINE L1 7303 7631 -411 2084 76 73 4 chr6 123005876 123006151 -66273403 + AluSg SINE Alu 1 294 -16 282 230 69 0 chr6 123006159 123006246 -66273308 + FRAM SINE Alu 48 140 -26 393 162 0 13 chr6 123007598 123007676 -66271878 + AluSp/q SINE Alu 236 303 0 788 164 0 0 chr6 123007688 123007816 -66271738 + FLAM_C SINE Alu 1 128 -5 201 74 0 0 chr6 123007817 123007844 -66271710 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 180 111 0 0 chr6 123007859 123007886 -66271668 + (GGAAA)n Simple_repeat Simple_repeat 5 31 0 2374 99 0 0 chr6 123007980 123008283 -66271271 - AluSx SINE Alu -9 303 1 1303 151 81 60 chr6 123008555 123008702 -66270852 - AluJb SINE Alu -22 290 148 2337 89 10 0 chr6 123008702 123008994 -66270560 - AluSq SINE Alu -18 295 1 1303 151 81 60 chr6 123008994 123009130 -66270424 - AluJb SINE Alu -164 148 1 1465 186 62 4 chr6 123010887 123011161 -66268393 + AluJb SINE Alu 1 290 -22 1766 155 16 44 chr6 123011191 123011507 -66268047 - AluJo SINE Alu -5 307 1 2020 92 0 104 chr6 123011607 123011944 -66267610 - AluSg SINE Alu -8 302 1 2354 87 3 3 chr6 123011951 123012260 -66267294 - AluY SINE Alu -2 309 1 2254 106 0 0 chr6 123012681 123012982 -66266572 + AluY SINE Alu 1 301 -10 639 236 0 0 chr6 123012998 123013125 -66266429 + FLAM_A SINE Alu 6 132 -10 24 0 0 0 chr6 123013199 123013223 -66266331 + AT_rich Low_complexity Low_complexity 1 24 0 2071 96 43 17 chr6 123013461 123013763 -66265791 + AluSx SINE Alu 1 310 -2 2294 101 7 0 chr6 123013823 123014121 -66265433 + AluSq SINE Alu 1 300 -13 266 236 278 35 chr6 123014703 123014847 -66264707 + MER112 DNA MER1_type 76 254 -6 820 153 0 0 chr6 123015204 123015328 -66264226 + FLAM_C SINE Alu 1 124 -19 2072 132 6 3 chr6 123015416 123015727 -66263827 + AluJb SINE Alu 1 312 0 365 263 68 101 chr6 123015824 123016102 -66263452 - L2 LINE L2 -50 3263 2995 2146 88 46 11 chr6 123016280 123016565 -66262989 - AluSq SINE Alu -18 295 1 3854 118 87 45 chr6 123016608 123017322 -66262232 - Tigger3(Golem) DNA MER2_type -1 3028 2285 470 194 9 56 chr6 123017322 123017430 -66262124 - Tigger3(Golem) DNA MER2_type -2921 108 6 263 316 68 8 chr6 123017438 123017571 -66261983 + L1M4 LINE L1 4784 4924 -1222 198 0 0 0 chr6 123017632 123017654 -66261900 + (ATTG)n Simple_repeat Simple_repeat 4 25 0 1792 166 0 21 chr6 123017654 123017937 -66261617 - AluJo SINE Alu -33 279 1 21 57 0 0 chr6 123018033 123018068 -66261486 + AT_rich Low_complexity Low_complexity 1 35 0 998 65 8 0 chr6 123018068 123018191 -66261363 - AluY SINE Alu -187 124 1 4065 163 60 31 chr6 123018198 123019183 -66260371 - L1MB7 LINE L1 0 6184 5171 1986 133 24 3 chr6 123019494 123019788 -66259766 - AluSx SINE Alu -12 300 1 34 24 0 0 chr6 123020005 123020046 -66259508 + AT_rich Low_complexity Low_complexity 1 41 0 679 186 65 0 chr6 123020831 123020955 -66258599 + MER20 DNA MER1_type 4 135 -84 1203 153 19 33 chr6 123020965 123021180 -66258374 + AluJb SINE Alu 85 296 -16 1494 160 71 21 chr6 123021320 123021602 -66257952 - AluJo SINE Alu -16 296 1 2417 63 3 3 chr6 123021894 123022193 -66257361 - AluY SINE Alu -12 299 1 2227 117 7 0 chr6 123023592 123023891 -66255663 - AluSx SINE Alu -11 301 1 2185 131 0 7 chr6 123024072 123024378 -66255176 + AluSx SINE Alu 1 304 -8 2210 109 7 0 chr6 123024623 123024916 -66254638 + AluSx SINE Alu 1 295 -17 1604 192 3 3 chr6 123026719 123027010 -66252544 + AluJo SINE Alu 1 291 -21 1069 176 106 0 chr6 123027040 123027228 -66252326 + MER20 DNA MER1_type 1 208 -11 236 324 103 22 chr6 123028323 123028459 -66251095 - MIR SINE MIR -91 171 25 2450 87 0 6 chr6 123028497 123028808 -66250746 - AluSx SINE Alu -3 309 1 3395 212 86 87 chr6 123029626 123029655 -66249899 + L1MCb LINE L1 3 31 -6245 1848 162 7 0 chr6 123029655 123029945 -66249609 + AluJb SINE Alu 1 292 -20 3395 212 86 87 chr6 123029945 123031351 -66248203 + L1MCb LINE L1 31 1425 -4851 2556 102 81 17 chr6 123031361 123031771 -66247783 - Tigger2 DNA MER2_type -10 2708 2273 376 155 17 0 chr6 123031761 123031819 -66247735 - Tigger2 DNA MER2_type -2649 69 11 * 710 131 36 140 chr6 123031828 123032049 -66247505 + L1MCb LINE L1 1438 1635 -4929 613 207 70 33 chr6 123032212 123032425 -66247129 + Charlie4 DNA MER1_type 77 297 -1664 23 54 0 0 chr6 123032964 123033001 -66246553 + GC_rich Low_complexity Low_complexity 1 37 0 294 282 14 0 chr6 123034547 123034618 -66244936 + CT-rich Low_complexity Low_complexity 1 72 0 210 310 113 14 chr6 123039389 123039531 -66240023 + MIR3 SINE MIR 24 179 -29 318 292 60 42 chr6 123040087 123040255 -66239299 - MER5A DNA MER1_type 0 189 19 21 57 0 0 chr6 123042463 123042498 -66237056 + AT_rich Low_complexity Low_complexity 1 35 0 369 0 0 0 chr6 123042673 123042714 -66236840 + (TG)n Simple_repeat Simple_repeat 2 42 0 2282 98 3 22 chr6 123044355 123044673 -66234881 - AluSx SINE Alu 0 312 1 2509 65 0 16 chr6 123045136 123045446 -66234108 + AluY SINE Alu 1 305 -6 1894 124 0 73 chr6 123045568 123045736 -66233818 - AluJo SINE Alu -21 291 155 2394 97 0 0 chr6 123045736 123046036 -66233518 - AluSg SINE Alu -9 301 2 1894 124 0 73 chr6 123046036 123046181 -66233373 - AluJo SINE Alu -157 155 1 792 115 0 61 chr6 123046399 123046547 -66233007 + FLAM_C SINE Alu 5 143 0 2046 122 3 25 chr6 123047090 123047409 -66232145 + AluSx SINE Alu 1 312 0 435 38 0 0 chr6 123048560 123048613 -66230941 + (CA)n Simple_repeat Simple_repeat 2 54 0 1373 171 88 0 chr6 123048630 123048870 -66230684 - AluJo SINE Alu -51 261 1 227 200 0 17 chr6 123051220 123051280 -66228274 + T-rich Low_complexity Low_complexity 2 60 0 450 0 0 0 chr6 123051683 123051733 -66227821 + (CA)n Simple_repeat Simple_repeat 2 51 0 346 277 124 40 chr6 123052651 123052900 -66226654 + L1ME3A LINE L1 5679 5948 -222 1828 163 10 3 chr6 123053324 123053619 -66225935 + AluJb SINE Alu 3 299 -13 23 0 0 0 chr6 123053997 123054020 -66225534 + AT_rich Low_complexity Low_complexity 1 23 0 2112 107 10 29 chr6 123054226 123054535 -66225019 - AluSx SINE Alu -9 303 1 1212 262 85 45 chr6 123054787 123055214 -66224340 - L1MC4a LINE L1 -204 5958 5512 34 0 0 0 chr6 123055499 123055533 -66224021 + AT_rich Low_complexity Low_complexity 1 34 0 1568 167 11 14 chr6 123055533 123055808 -66223746 - AluJb SINE Alu -22 290 17 1585 173 3 68 chr6 123055811 123056135 -66223419 - AluJo SINE Alu -9 303 1 295 302 111 17 chr6 123056787 123056959 -66222595 + MIR3 SINE MIR 11 198 -10 773 145 81 0 chr6 123057031 123057155 -66222399 + FLAM_C SINE Alu 3 136 -7 387 148 34 0 chr6 123057157 123057245 -66222309 + GA-rich Low_complexity Low_complexity 1 91 0 665 163 70 70 chr6 123057321 123057438 -66222116 + MER5B DNA MER1_type 7 126 -52 2220 100 0 29 chr6 123057438 123057749 -66221805 - AluY SINE Alu -9 302 1 665 163 70 70 chr6 123057749 123057803 -66221751 + MER5B DNA MER1_type 125 178 0 2131 134 0 3 chr6 123058784 123059083 -66220471 - AluSx SINE Alu -14 298 1 1997 133 0 31 chr6 123059125 123059447 -66220107 - AluSx SINE Alu 0 312 1 220 290 151 0 chr6 123059831 123059924 -66219630 - MER5A DNA MER1_type -57 132 26 2135 97 10 20 chr6 123060110 123060410 -66219144 + AluSx SINE Alu 1 297 -15 257 180 0 16 chr6 123060410 123060471 -66219083 + (TA)n Simple_repeat Simple_repeat 1 60 0 315 0 0 0 chr6 123060471 123060506 -66219048 + (TG)n Simple_repeat Simple_repeat 2 36 0 882 196 23 12 chr6 123060524 123060697 -66218857 + FRAM SINE Alu 2 176 0 5770 131 119 45 chr6 123061466 123062644 -66216910 - MER52C LTR ERV1 0 1278 14 1872 170 0 0 chr6 123062816 123063122 -66216432 - AluJo SINE Alu -6 306 1 749 91 0 0 chr6 123063553 123063652 -66215902 - AluSp/q SINE Alu -30 283 185 302 157 0 0 chr6 123063668 123063719 -66215835 - AluJ/FLAM SINE Alu -208 94 44 936 152 24 24 chr6 123063786 123063950 -66215604 - AluJb SINE Alu -18 294 131 339 200 25 50 chr6 123064296 123064376 -66215178 + L1ME3 LINE L1 5821 5898 -270 192 327 0 0 chr6 123064537 123064592 -66214962 + MIR3 SINE MIR 140 194 -14 2358 79 14 0 chr6 123064635 123064926 -66214628 + AluSg SINE Alu 1 295 -15 994 141 76 138 chr6 123064984 123065090 -66214464 + L1MD3 LINE L1 7694 7805 -190 790 122 0 53 chr6 123065090 123065221 -66214333 + FLAM_C SINE Alu 1 124 -9 994 141 76 138 chr6 123065221 123065297 -66214257 + L1MD3 LINE L1 7805 7884 -111 2261 127 3 0 chr6 123065297 123065605 -66213949 - AluSx SINE Alu -3 309 1 994 141 76 138 chr6 123065605 123065725 -66213829 + L1MD3 LINE L1 7884 7978 -17 2284 118 0 0 chr6 123065725 123066021 -66213533 + AluSq SINE Alu 1 296 -17 617 215 118 7 chr6 123066215 123066350 -66213204 - L1MC/D LINE L1 -2145 5663 5514 634 246 133 15 chr6 123067189 123067392 -66212162 + MIR SINE MIR 24 250 -12 1011 173 86 47 chr6 123067564 123067706 -66211848 - Charlie4a DNA MER1_type -1512 449 314 2079 94 29 36 chr6 123067706 123068013 -66211541 + AluSx SINE Alu 1 305 -7 1011 173 86 47 chr6 123068013 123068229 -66211325 - Charlie4a DNA MER1_type -1647 314 77 686 131 36 140 chr6 123068392 123068613 -66210941 - L1MCb LINE L1 -4929 1635 1438 376 155 17 0 chr6 123068622 123068680 -66210874 + Tigger2 DNA MER2_type 11 69 -2649 * 2556 102 81 17 chr6 123068670 123069080 -66210474 + Tigger2 DNA MER2_type 2273 2708 -10 3383 212 86 87 chr6 123069090 123070496 -66209058 - L1MCb LINE L1 -4851 1194 31 1848 162 7 0 chr6 123070496 123070786 -66208768 - AluJb SINE Alu -20 292 1 3383 212 86 87 chr6 123070786 123070815 -66208739 - L1MCb LINE L1 -6014 31 3 2450 87 0 6 chr6 123071633 123071944 -66207610 + AluSx SINE Alu 1 309 -3 236 324 103 22 chr6 123071982 123072118 -66207436 + MIR SINE MIR 25 171 -91 1069 176 106 0 chr6 123073213 123073401 -66206153 - MER20 DNA MER1_type -11 208 1 1604 192 3 3 chr6 123073431 123073722 -66205832 - AluJo SINE Alu -21 291 1 2210 109 7 0 chr6 123075525 123075818 -66203736 - AluSx SINE Alu -17 295 1 2185 131 0 7 chr6 123076063 123076369 -66203185 - AluSx SINE Alu -8 304 1 2227 117 7 0 chr6 123076550 123076849 -66202705 + AluSx SINE Alu 1 301 -11 2417 63 3 3 chr6 123078248 123078547 -66201007 + AluY SINE Alu 1 299 -12 1494 160 71 21 chr6 123078839 123079121 -66200433 + AluJo SINE Alu 1 296 -16 1203 153 19 33 chr6 123079261 123079476 -66200078 - AluJb SINE Alu -16 296 85 679 186 65 0 chr6 123079486 123079610 -66199944 - MER20 DNA MER1_type -84 135 4 34 24 0 0 chr6 123080395 123080436 -66199118 + AT_rich Low_complexity Low_complexity 1 41 0 1986 133 24 3 chr6 123080653 123080947 -66198607 + AluSx SINE Alu 1 300 -12 4065 163 60 31 chr6 123081258 123082243 -66197311 + L1MB7 LINE L1 5171 6184 0 2212 124 0 0 chr6 123082401 123082700 -66196854 - AluSx SINE Alu -13 299 1 2216 110 7 0 chr6 123082805 123083095 -66196459 - AluSx SINE Alu -20 292 1 1448 267 54 40 chr6 123083388 123084037 -66195517 - L1ME3A LINE L1 -223 5930 5273 872 224 24 10 chr6 123084039 123084244 -66195310 - AluJo SINE Alu 0 312 105 2199 125 7 0 chr6 123084245 123084540 -66195014 + AluSx SINE Alu 1 297 -15 198 0 0 0 chr6 123084547 123084569 -66194985 + (GA)n Simple_repeat Simple_repeat 1 22 0 1085 265 37 80 chr6 123084611 123085016 -66194538 - L1ME3A LINE L1 -855 5274 4853 2181 113 10 0 chr6 123085016 123085317 -66194237 + AluSx SINE Alu 3 306 -6 1085 265 37 80 chr6 123085317 123085344 -66194210 - L1ME3A LINE L1 -1276 4853 4826 2327 75 0 29 chr6 123085344 123085652 -66193902 - AluY SINE Alu -12 299 1 1085 265 37 80 chr6 123085652 123086053 -66193501 - L1ME3A LINE L1 -1303 4826 4476 1875 148 17 3 chr6 123086072 123086362 -66193192 + AluJo SINE Alu 1 294 -18 384 256 116 41 chr6 123086433 123086854 -66192700 - L1MEd LINE L1 -3754 2375 1961 22 0 0 0 chr6 123087100 123087122 -66192432 + AT_rich Low_complexity Low_complexity 1 22 0 306 131 0 0 chr6 123087122 123087172 -66192382 + AluJb SINE Alu 1 43 -257 2067 144 0 0 chr6 123087173 123087465 -66192089 - AluSx SINE Alu -20 292 1 361 203 52 75 chr6 123087467 123087601 -66191953 - L1MEd LINE L1 -4578 1631 1425 1058 113 0 0 chr6 123087612 123087753 -66191801 - FRAM SINE Alu -17 159 19 1863 127 3 18 chr6 123087909 123088193 -66191361 + AluJb SINE Alu 22 301 -11 965 159 0 35 chr6 123088250 123088420 -66191134 - FRAM SINE Alu -13 163 1 763 236 143 76 chr6 123088427 123088766 -66190788 - L1MEd LINE L1 -4862 1257 942 1965 157 7 0 chr6 123088766 123089065 -66190489 + AluSx SINE Alu 1 301 -11 763 236 143 76 chr6 123089065 123089393 -66190161 - L1MEd LINE L1 -5177 942 594 287 330 72 79 chr6 123089396 123089697 -66189857 - L1MEd LINE L1 -5446 673 372 2218 93 0 28 chr6 123089697 123090019 -66189535 - AluSq SINE Alu 0 314 1 287 330 72 79 chr6 123090019 123090325 -66189229 - L1MEd LINE L1 -5747 372 69 350 103 86 0 chr6 123090360 123090418 -66189136 - MLT2D LTR ERVL 0 515 453 210 171 0 0 chr6 123090461 123090502 -66189052 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 225 196 0 0 chr6 123090506 123090552 -66189002 - LTR66 LTR ERVL -171 439 394 1933 142 64 53 chr6 123090572 123090822 -66188732 - MLT2D LTR ERVL -50 364 107 1512 191 53 0 chr6 123090822 123090940 -66188614 + AluJo SINE Alu 1 111 -201 210 37 0 0 chr6 123090940 123090967 -66188587 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1512 191 53 0 chr6 123090967 123091131 -66188423 + AluJo SINE Alu 111 298 -14 1933 142 64 53 chr6 123091131 123091240 -66188314 - MLT2D LTR ERVL -307 107 1 2198 106 0 38 chr6 123092190 123092510 -66187044 - AluSg1 SINE Alu -1 308 1 2033 131 3 0 chr6 123092537 123092843 -66186711 + AluSx SINE Alu 1 307 0 344 82 16 33 chr6 123092876 123092937 -66186617 - AluJo SINE Alu -2 298 239 881 147 0 45 chr6 123092937 123093093 -66186461 - AluJo SINE Alu -163 149 1 1603 179 11 11 chr6 123093321 123093594 -66185960 + AluJo SINE Alu 1 273 -39 222 37 0 0 chr6 123093597 123093624 -66185930 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 369 0 0 0 chr6 123093623 123093664 -66185890 + (CA)n Simple_repeat Simple_repeat 1 41 0 259 250 13 13 chr6 123094470 123094547 -66185007 + GA-rich Low_complexity Low_complexity 1 77 0 462 164 0 0 chr6 123094925 123094998 -66184556 - AluSq/x SINE Alu -180 133 61 181 276 197 0 chr6 123095443 123095519 -66184035 + MIR SINE MIR 53 143 -119 525 247 25 32 chr6 123096105 123096263 -66183291 - MIR SINE MIR -3 259 103 2087 103 0 0 chr6 123096571 123096886 -66182668 - AluSg SINE Alu 0 315 1 4283 161 20 29 chr6 123096887 123097099 -66182455 - L1MB7 LINE L1 -8 6176 5964 504 0 0 0 chr6 123097099 123097155 -66182399 + (TTTTA)n Simple_repeat Simple_repeat 2 57 0 1698 155 0 14 chr6 123097157 123097441 -66182113 - AluJb SINE Alu -32 280 1 4283 161 20 29 chr6 123097441 123098015 -66181539 - L1MB7 LINE L1 -221 5963 5394 21 36 0 0 chr6 123098020 123098048 -66181506 + AT_rich Low_complexity Low_complexity 1 28 0 1705 148 3 26 chr6 123098048 123098351 -66181203 + AluJb SINE Alu 1 296 -16 253 246 43 14 chr6 123098362 123098431 -66181123 + MER5B DNA MER1_type 8 78 -100 534 267 64 23 chr6 123098452 123098800 -66180754 - MLT1L LTR MaLR -31 584 161 265 145 0 97 chr6 123098858 123098920 -66180634 - MLT1J LTR MaLR -455 56 1 1413 194 17 17 chr6 123098979 123099106 -66180448 + AluJo SINE Alu 1 127 -185 2364 87 0 0 chr6 123099106 123099415 -66180139 + AluSc SINE Alu 1 309 0 1413 194 17 17 chr6 123099415 123099581 -66179973 + AluJo SINE Alu 126 294 -18 519 104 0 0 chr6 123100234 123100311 -66179243 - FLAM_A SINE Alu -3 139 63 446 191 99 68 chr6 123100322 123100484 -66179070 - MER46A DNA MER2_type -67 169 3 * 814 203 0 7 chr6 123100345 123100488 -66179066 + MER46A DNA MER2_type 5 146 -90 1234 250 29 34 chr6 123100680 123101064 -66178490 - L1MC4a LINE L1 -1921 5887 5506 581 141 0 141 chr6 123101186 123101335 -66178219 + FLAM_C SINE Alu 1 128 -5 2160 119 0 3 chr6 123101369 123101680 -66177874 + AluSx SINE Alu 1 310 -2 39 0 0 0 chr6 123101813 123101852 -66177702 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr6 123102164 123102192 -66177362 + AT_rich Low_complexity Low_complexity 1 28 0 730 157 8 0 chr6 123103736 123103857 -66175697 - L1MB3 LINE L1 -37 6146 6025 1996 89 68 3 chr6 123104495 123104788 -66174766 + AluSq SINE Alu 1 312 -1 614 235 7 34 chr6 123105159 123105308 -66174246 + MER5B DNA MER1_type 14 158 -20 1669 142 50 0 chr6 123105375 123105656 -66173898 - AluSx SINE Alu -13 299 5 4693 210 61 61 chr6 123105661 123105737 -66173817 + MLT1A2-int LTR MaLR 83 157 -1214 2090 116 3 0 chr6 123105737 123106039 -66173515 - AluSx SINE Alu -9 303 1 4693 210 61 61 chr6 123106039 123107249 -66172305 + MLT1A2-int LTR MaLR 157 1370 -1 1625 205 21 37 chr6 123107250 123107626 -66171928 + MLT1A2 LTR MaLR 1 370 -4 2212 150 31 19 chr6 123108255 123108614 -66170940 - THE1B LTR MaLR -1 363 1 206 62 31 0 chr6 123108721 123108753 -66170801 + (TC)n Simple_repeat Simple_repeat 2 34 0 2352 118 0 26 chr6 123109459 123109805 -66169749 + MER1B DNA MER1_type 1 337 0 193 189 0 0 chr6 123109805 123109842 -66169712 + L2 LINE L2 3230 3266 -6 280 262 0 16 chr6 123110152 123110213 -66169341 - L2 LINE L2 -64 3208 3149 595 311 84 9 chr6 123110550 123110775 -66168779 - MIR SINE MIR -1 261 20 643 176 74 85 chr6 123110887 123111063 -66168491 - MIR SINE MIR 0 262 89 1807 137 46 3 chr6 123111113 123111398 -66168156 + AluSq SINE Alu 1 297 -16 249 292 56 0 chr6 123111536 123111608 -66167946 - MER91B DNA MER1_type -64 76 1 23 0 0 0 chr6 123111839 123111862 -66167692 + AT_rich Low_complexity Low_complexity 1 23 0 201 147 0 0 chr6 123113450 123113484 -66166070 + (CA)n Simple_repeat Simple_repeat 2 35 0 346 321 61 30 chr6 123114053 123114218 -66165336 - MIR SINE MIR -73 189 20 1024 161 103 118 chr6 123114254 123114535 -66165019 - MER2 DNA MER2_type 0 344 67 2060 125 0 0 chr6 123114535 123114824 -66164730 - AluSx SINE Alu -23 289 1 1024 161 103 118 chr6 123114824 123114891 -66164663 - MER2 DNA MER2_type -277 67 1 240 328 98 16 chr6 123115048 123115170 -66164384 - L2 LINE L2 -1 3271 3140 * 450 274 158 0 chr6 123115168 123115358 -66164196 + L2 LINE L2 2724 2943 -371 356 248 178 0 chr6 123115791 123115920 -66163634 + MIR3 SINE MIR 28 179 -29 264 59 0 0 chr6 123116437 123116471 -66163083 + (T)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chr6 123118565 123118585 -66160969 + (A)n Simple_repeat Simple_repeat 1 20 0 34 72 0 0 chr6 123118696 123118765 -66160789 + GC_rich Low_complexity Low_complexity 1 69 0 270 164 0 0 chr6 123119081 123119136 -66160418 + CT-rich Low_complexity Low_complexity 1 55 0 237 108 0 0 chr6 123119814 123119851 -66159703 + (CA)n Simple_repeat Simple_repeat 1 37 0 375 60 0 0 chr6 123121052 123121102 -66158452 + (TC)n Simple_repeat Simple_repeat 2 51 0 351 0 0 0 chr6 123121102 123121141 -66158413 + (CA)n Simple_repeat Simple_repeat 1 39 0 1888 128 3 64 chr6 123124256 123124584 -66154970 + AluSx SINE Alu 1 308 -4 2111 117 0 3 chr6 123125247 123125554 -66154000 - AluSx SINE Alu -6 306 1 1723 160 33 16 chr6 123126183 123126490 -66153064 - AluJb SINE Alu 0 312 1 274 184 113 95 chr6 123126870 123126956 -66152598 - L1MC5 LINE L1 -47 7914 7831 2044 122 3 0 chr6 123126956 123127252 -66152302 - AluSq SINE Alu -16 297 1 274 184 113 95 chr6 123127252 123127333 -66152221 - L1MC5 LINE L1 -130 7831 7744 238 203 68 17 chr6 123127589 123127648 -66151906 - LTR67 LTR ERVL -400 157 96 1189 157 52 162 chr6 123127893 123128313 -66151241 + MLT1A2 LTR MaLR 1 374 0 282 29 0 0 chr6 123128331 123128366 -66151188 + (TG)n Simple_repeat Simple_repeat 2 36 0 1745 143 3 31 chr6 123128367 123128661 -66150893 - AluJb SINE Alu -26 286 1 860 128 0 0 chr6 123129054 123129179 -66150375 + FLAM_C SINE Alu 1 125 -18 24 0 0 0 chr6 123129181 123129205 -66150349 + AT_rich Low_complexity Low_complexity 1 24 0 2094 128 0 0 chr6 123129301 123129607 -66149947 + AluSx SINE Alu 1 306 -6 350 304 116 7 chr6 123131112 123131250 -66148304 - MIR3 SINE MIR -1 207 55 1744 104 29 0 chr6 123131748 123132024 -66147530 - AluSq SINE Alu 0 320 38 1281 152 0 0 chr6 123132204 123132408 -66147146 + AluJo SINE Alu 1 204 -108 2496 45 0 7 chr6 123132656 123132964 -66146590 + AluY SINE Alu 1 306 -5 2360 83 0 0 chr6 123133197 123133498 -66146056 + AluSq SINE Alu 1 301 -12 292 257 192 23 chr6 123133668 123133929 -66145625 - L1MC5 LINE L1 -30 7931 7627 192 243 43 29 chr6 123134040 123134110 -66145444 + MIR SINE MIR 7 77 -185 2179 134 20 51 chr6 123134493 123134902 -66144652 + MLT2C1 LTR ERVL 2 397 0 311 318 0 12 chr6 123135143 123135228 -66144326 + LTR16C LTR ERVL 408 491 0 1565 131 22 78 chr6 123135261 123135582 -66143972 + AluJo SINE Alu 1 303 -9 2005 142 14 79 chr6 123135811 123136228 -66143326 - MLT1B LTR MaLR 0 390 1 4041 178 35 9 chr6 123136764 123137533 -66142021 - L1MC3 LINE L1 -32 7753 6965 1688 99 161 3 chr6 123137536 123137828 -66141726 - MER46B DNA MER2_type -2 234 22 630 119 37 9 chr6 123137840 123137949 -66141605 - L1MC3 LINE L1 -830 6955 6844 * 744 175 24 0 chr6 123137938 123138064 -66141490 - L1MC3 LINE L1 -1352 6433 6305 362 223 18 0 chr6 123138081 123138193 -66141361 - L1MA4A LINE L1 -2 6301 6188 2272 154 2 38 chr6 123138194 123138238 -66141316 - L1PB4 LINE L1 -100 6056 6013 5514 171 35 80 chr6 123138238 123138475 -66141079 - L1MA5A LINE L1 -275 6022 5776 246 32 0 0 chr6 123138475 123138506 -66141048 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1959 86 0 45 chr6 123138508 123138800 -66140754 - AluSg SINE Alu -31 279 1 5514 171 35 80 chr6 123138800 123139989 -66139565 - L1MA5A LINE L1 -522 5775 4533 1728 173 3 6 chr6 123139989 123140302 -66139252 - AluJb SINE Alu 0 312 1 5514 171 35 80 chr6 123140302 123140604 -66138950 - L1MA5A LINE L1 -1764 4533 4418 2335 41 41 0 chr6 123140604 123140894 -66138660 - AluY SINE Alu -9 302 1 5514 171 35 80 chr6 123140894 123141194 -66138360 - L1MA5A LINE L1 -1879 4418 4106 2506 193 41 38 chr6 123141198 123141618 -66137936 - L1MC3 LINE L1 -1472 6313 5889 2082 91 0 58 chr6 123141618 123141948 -66137606 - AluY SINE Alu 0 311 1 2506 193 41 38 chr6 123141948 123142133 -66137421 - L1MC3 LINE L1 -1896 5889 5706 1530 152 12 4 chr6 123142243 123142500 -66137054 + AluJo SINE Alu 35 293 -19 2317 71 7 0 chr6 123142505 123142801 -66136753 + AluSp SINE Alu 1 298 -15 2320 88 3 0 chr6 123143524 123143831 -66135723 - AluSg SINE Alu -2 308 1 204 125 0 0 chr6 123144849 123144881 -66134673 + (CA)n Simple_repeat Simple_repeat 2 33 0 943 129 7 0 chr6 123145322 123145462 -66134092 + AluJb SINE Alu 1 141 -171 28 48 0 0 chr6 123145494 123145536 -66134018 + AT_rich Low_complexity Low_complexity 1 42 0 810 109 0 0 chr6 123145852 123145962 -66133592 + MER83 LTR ERV1 1 110 -338 * 1946 139 64 88 chr6 123145947 123146370 -66133184 + MER83 LTR ERV1 39 448 0 2113 122 3 0 chr6 123146512 123146800 -66132754 + AluSq SINE Alu 1 289 -24 22 0 0 0 chr6 123146800 123146822 -66132732 + AT_rich Low_complexity Low_complexity 1 22 0 2038 113 3 36 chr6 123148089 123148391 -66131163 - AluSx SINE Alu -20 292 1 1470 208 101 48 chr6 123148459 123148877 -66130677 - MLT2B1 LTR ERVL -25 495 56 4966 152 72 78 chr6 123148888 123149148 -66130406 - ERVL-B1 LTR ERVL 0 5764 5504 2310 92 0 20 chr6 123149148 123149454 -66130100 - AluSp SINE Alu -13 300 1 4966 152 72 78 chr6 123149454 123150224 -66129330 - ERVL-B1 LTR ERVL -260 5504 4740 199 359 71 47 chr6 123150782 123150952 -66128602 - L2 LINE L2 -4 3268 3095 404 225 123 0 chr6 123150960 123151098 -66128456 + HAL1 LINE L1 1 155 -2352 680 115 0 123 chr6 123151108 123151178 -66128376 + FLAM_A SINE Alu 10 59 -252 2352 68 0 4 chr6 123151178 123151483 -66128071 - AluY SINE Alu 0 304 1 680 115 0 123 chr6 123151483 123151541 -66128013 + FLAM_A SINE Alu 59 123 -188 1150 286 130 20 chr6 123151542 123152049 -66127505 + HAL1 LINE L1 149 711 -1796 933 193 6 33 chr6 123152052 123152233 -66127321 - MER20 DNA MER1_type -43 176 1 584 208 103 65 chr6 123152234 123152387 -66127167 + HAL1 LINE L1 748 894 -1613 2275 122 0 0 chr6 123152387 123152698 -66126856 + AluSx SINE Alu 1 311 -1 584 208 103 65 chr6 123152698 123152759 -66126795 + HAL1 LINE L1 894 951 -1556 2218 100 0 0 chr6 123152759 123153039 -66126515 + AluSx SINE Alu 26 305 -7 584 208 103 65 chr6 123153039 123153198 -66126356 + HAL1 LINE L1 951 1216 -1291 257 186 68 17 chr6 123153218 123153277 -66126277 - MLT1J1 LTR MaLR -21 425 364 2166 136 0 0 chr6 123153400 123153702 -66125852 + AluSx SINE Alu 3 304 -8 492 226 121 8 chr6 123153777 123153901 -66125653 - MLT1J LTR MaLR -373 138 1 1744 165 24 20 chr6 123153914 123154211 -66125343 + AluJo SINE Alu 1 298 -14 540 288 29 6 chr6 123154921 123155091 -66124463 - L2 LINE L2 -2922 392 219 660 346 10 38 chr6 123155118 123155410 -66124144 + L2 LINE L2 1083 1366 -1948 715 219 122 10 chr6 123155425 123155621 -66123933 - L2 LINE L2 -9 3304 3087 564 304 16 27 chr6 123155631 123155815 -66123739 - L2 LINE L2 -498 2816 2635 515 81 46 0 chr6 123155918 123156005 -66123549 - LTR37B LTR ERV1 0 468 378 8998 155 154 9 chr6 123156086 123157915 -66121639 + L1PBa LINE L1 6 2098 -4765 1711 239 81 14 chr6 123158296 123159153 -66120401 - L1MC4 LINE L1 -222 7586 6588 620 192 58 113 chr6 123159214 123159283 -66120271 - MER2 DNA MER2_type -1 344 273 771 211 0 0 chr6 123159283 123159416 -66120138 + FLAM_C SINE Alu 1 133 0 620 192 58 113 chr6 123159416 123159439 -66120115 - MER2 DNA MER2_type -72 273 250 335 43 159 43 chr6 123159439 123159508 -66120046 + L1MB3 LINE L1 6106 6182 -1 620 192 58 113 chr6 123159508 123159654 -66119900 - MER2 DNA MER2_type -95 250 118 745 200 0 7 chr6 123159682 123159817 -66119737 - MER2 DNA MER2_type -210 135 2 553 238 75 12 chr6 123159817 123159977 -66119577 - L1MC4 LINE L1 -1423 6619 6450 2071 88 91 0 chr6 123160249 123160523 -66119031 - AluSx SINE Alu -13 299 1 625 233 8 15 chr6 123160959 123161092 -66118462 + FLAM_A SINE Alu 1 132 -1 305 284 11 0 chr6 123161406 123161494 -66118060 - MER81 DNA DNA -21 93 5 719 154 183 29 chr6 123161511 123161565 -66117989 - MER3 DNA MER1_type -7 202 158 1757 120 46 11 chr6 123161565 123161848 -66117706 - AluSx SINE Alu -19 293 1 719 154 183 29 chr6 123161848 123161968 -66117586 - MER3 DNA MER1_type -51 158 1 26 30 0 0 chr6 123162448 123162481 -66117073 + GC_rich Low_complexity Low_complexity 1 33 0 231 216 0 0 chr6 123163077 123163128 -66116426 + MIR3 SINE MIR 106 156 -52 457 308 128 0 chr6 123163372 123163544 -66116010 + MIR SINE MIR 12 205 -57 489 175 61 26 chr6 123163567 123163681 -66115873 + MIR SINE MIR 32 149 -113 1510 95 0 5 chr6 123164149 123164349 -66115205 + AluSx SINE Alu 1 199 -113 924 193 0 0 chr6 123164349 123164510 -66115044 + AluSg/x SINE Alu 149 309 -3 2076 146 3 13 chr6 123164592 123164907 -66114647 - AluSx SINE Alu 0 312 1 1849 94 42 66 chr6 123165646 123165932 -66113622 + AluSx SINE Alu 1 279 -33 197 32 0 32 chr6 123165934 123165965 -66113589 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2484 91 0 0 chr6 123166045 123166352 -66113202 - AluY SINE Alu -4 307 1 2545 60 0 0 chr6 123166353 123166651 -66112903 - AluSq SINE Alu -15 298 1 2177 130 0 3 chr6 123166920 123167221 -66112333 + AluSx SINE Alu 1 300 -12 251 138 35 0 chr6 123167738 123167796 -66111758 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 1900 300 153 59 chr6 123167960 123169399 -66110155 - L2 LINE L2 -3 3310 1623 2123 123 10 3 chr6 123169399 123169709 -66109845 - AluSx SINE Alu 0 312 1 1900 300 153 59 chr6 123169709 123170349 -66109205 - L2 LINE L2 -1690 1623 1044 686 307 127 6 chr6 123170491 123170830 -66108724 + L2 LINE L2 1719 2098 -1216 293 274 108 20 chr6 123170838 123170940 -66108614 + MIR SINE MIR 150 260 -2 344 248 233 8 chr6 123171536 123171669 -66107885 - MIR SINE MIR -26 236 74 2286 104 7 0 chr6 123171721 123172019 -66107535 + AluSx SINE Alu 1 300 -12 1496 129 0 0 chr6 123172100 123172302 -66107252 + AluSx SINE Alu 1 202 -110 775 283 19 60 chr6 123173249 123173518 -66106036 + MIR SINE MIR 2 259 -3 1928 121 10 24 chr6 123173952 123174242 -66105312 + AluJo SINE Alu 11 296 -16 1661 171 68 3 chr6 123174431 123174723 -66104831 + AluJb SINE Alu 1 311 -1 2194 176 68 113 chr6 123174764 123175337 -66104217 + MER44D DNA MER2_type 4 605 0 1527 154 55 26 chr6 123175426 123175540 -66104014 + AluJo SINE Alu 11 120 -192 213 39 0 0 chr6 123175540 123175566 -66103988 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 1527 154 55 26 chr6 123175566 123175724 -66103830 + AluJo SINE Alu 120 291 -21 24 32 0 0 chr6 123176237 123176268 -66103286 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 123176309 123176330 -66103224 + AT_rich Low_complexity Low_complexity 1 21 0 923 72 0 0 chr6 123176330 123176441 -66103113 - HY1 scRNA scRNA -1 111 1 1721 170 3 37 chr6 123176500 123176823 -66102731 - AluJb SINE Alu 0 312 1 23 68 0 0 chr6 123177265 123177309 -66102245 + AT_rich Low_complexity Low_complexity 1 44 0 645 224 52 0 chr6 123177439 123177573 -66101981 - MLT1A1 LTR MaLR -224 141 1 22 35 0 0 chr6 123177584 123177613 -66101941 + AT_rich Low_complexity Low_complexity 1 29 0 2306 53 42 7 chr6 123178468 123178752 -66100802 - AluY SINE Alu -17 294 1 591 136 18 45 chr6 123179104 123179214 -66100340 + FRAM SINE Alu 63 169 -7 1648 163 29 4 chr6 123180029 123180305 -66099249 - AluJb SINE Alu -29 283 1 198 286 48 0 chr6 123180325 123180388 -66099166 + MIR SINE MIR 73 138 -70 399 297 88 16 chr6 123180520 123180702 -66098852 + MER91A DNA MER1_type 2 196 0 304 243 0 0 chr6 123180713 123180783 -66098771 + MER117 DNA MER1_type 14 83 -114 731 314 25 33 chr6 123180885 123181127 -66098427 + MIR SINE MIR 13 252 -10 906 187 0 47 chr6 123181774 123181945 -66097609 + FRAM SINE Alu 1 163 -3 30 0 0 0 chr6 123182770 123182800 -66096754 + AT_rich Low_complexity Low_complexity 1 30 0 265 247 11 54 chr6 123182944 123183037 -66096517 + MIR SINE MIR 118 206 -56 623 129 8 10 chr6 123183493 123183751 -66095803 + AluSx SINE Alu 1 301 -9 271 220 34 0 chr6 123183841 123183900 -66095654 + MER103 DNA DNA 58 118 -48 654 186 68 17 chr6 123183914 123184032 -66095522 + Tigger7 DNA MER2_type 5 128 -577 251 253 98 40 chr6 123184128 123184302 -66095252 - MER65B LTR ERV1 -21 510 327 900 165 0 0 chr6 123184610 123184743 -66094811 + FLAM_C SINE Alu 1 133 0 2551 47 3 0 chr6 123184809 123185106 -66094448 - AluY SINE Alu -13 298 1 287 224 0 0 chr6 123185883 123185941 -66093613 - MIR SINE MIR -121 141 84 2427 80 3 0 chr6 123186598 123186900 -66092654 + AluSg SINE Alu 1 303 -7 553 207 89 54 chr6 123186948 123187151 -66092403 + L2 LINE L2 3101 3310 -3 353 188 42 83 chr6 123187428 123187524 -66092030 + L2 LINE L2 3221 3312 -1 2332 93 7 0 chr6 123188208 123188509 -66091045 + AluY SINE Alu 1 303 -8 874 282 98 60 chr6 123189471 123190180 -66089374 + L2 LINE L2 2440 3192 -121 2565 55 0 13 chr6 123190614 123190924 -66088630 + AluY SINE Alu 1 306 -5 2296 82 0 60 chr6 123190939 123191270 -66088284 + AluY SINE Alu 1 311 0 382 277 0 10 chr6 123191281 123191382 -66088172 + MER5B DNA MER1_type 1 100 -78 847 234 48 26 chr6 123191791 123192022 -66087532 - L1M4 LINE L1 -1929 4217 3982 28 0 0 0 chr6 123192374 123192402 -66087152 + AT_rich Low_complexity Low_complexity 1 28 0 1950 166 13 0 chr6 123194547 123194855 -66084699 + AluJb SINE Alu 1 312 0 29 28 0 0 chr6 123194940 123194976 -66084578 + AT_rich Low_complexity Low_complexity 1 36 0 965 137 8 0 chr6 123194976 123195107 -66084447 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr6 123195339 123195360 -66084194 + AT_rich Low_complexity Low_complexity 1 21 0 197 212 0 0 chr6 123195377 123195410 -66084144 - L3 LINE CR1 -15 1562 1530 269 338 12 0 chr6 123195411 123195491 -66084063 - L3 LINE CR1 -6 1571 1491 1984 167 0 0 chr6 123195944 123196243 -66083311 + AluJb SINE Alu 2 300 -12 751 164 0 9 chr6 123196298 123196414 -66083140 + FLAM_C SINE Alu 2 116 -27 1416 99 134 0 chr6 123196674 123196897 -66082657 + AluSg SINE Alu 1 253 -57 2406 64 0 3 chr6 123197492 123197803 -66081751 + AluY SINE Alu 1 310 -1 4234 257 74 25 chr6 123198468 123198636 -66080918 - L1MCc LINE L1 -4821 2120 1962 1377 165 6 113 chr6 123198636 123198964 -66080590 - AluJb SINE Alu -9 293 1 4234 257 74 25 chr6 123198964 123199508 -66080046 - L1MCc LINE L1 -4979 1962 1446 2230 48 4 0 chr6 123199508 123199780 -66079774 - AluY SINE Alu -3 308 36 4234 257 74 25 chr6 123199780 123200875 -66078679 - L1MCc LINE L1 -5495 1446 205 446 266 115 78 chr6 123200983 123201299 -66078255 + L1MEc LINE L1 953 1256 -5140 2274 99 0 0 chr6 123201299 123201601 -66077953 - AluSx SINE Alu -10 302 1 446 266 115 78 chr6 123201601 123201883 -66077671 + L1MEc LINE L1 1256 1526 -4870 2137 122 0 0 chr6 123201883 123202179 -66077375 + AluSx SINE Alu 1 296 -16 446 266 115 78 chr6 123202179 123202341 -66077213 + L1MEc LINE L1 1526 1751 -4645 2176 60 7 3 chr6 123202341 123202648 -66076906 + AluY SINE Alu 1 308 0 446 266 115 78 chr6 123202648 123202718 -66076836 + L1MEc LINE L1 1751 1817 -4579 210 216 0 0 chr6 123202756 123202793 -66076761 + (CA)n Simple_repeat Simple_repeat 2 38 0 228 98 118 20 chr6 123202841 123202892 -66076662 - MLT2B1 LTR ERVL 0 515 460 2296 89 0 0 chr6 123202943 123203236 -66076318 - AluSx SINE Alu -19 293 1 205 174 76 35 chr6 123203276 123203448 -66076106 + (TA)n Simple_repeat Simple_repeat 2 180 0 1333 201 41 37 chr6 123203472 123203836 -66075718 - MLT2B1 LTR ERVL -59 355 1 327 238 143 0 chr6 123204000 123204105 -66075449 + L1MEc LINE L1 2145 2264 -4132 182 37 37 0 chr6 123204115 123204142 -66075412 + (GGGA)n Simple_repeat Simple_repeat 4 31 0 257 228 76 0 chr6 123204142 123204221 -66075333 + L1P LINE L1 3606 3690 -2456 2359 190 148 74 chr6 123204274 123205090 -66074464 + LTR28 LTR ERV1 1 925 -95 922 224 16 0 chr6 123205086 123205269 -66074285 + LTR28 LTR ERV1 835 1020 0 * 41 0 0 0 chr6 123205740 123205781 -66073773 + AT_rich Low_complexity Low_complexity 1 41 0 1827 137 3 27 chr6 123205810 123206103 -66073451 + AluJb SINE Alu 5 290 -22 338 310 72 10 chr6 123206106 123206345 -66073209 + L1MC/D LINE L1 5326 5578 -674 314 317 174 36 chr6 123206525 123206749 -66072805 + MIR SINE MIR 1 255 -7 1431 158 27 35 chr6 123208433 123208692 -66070862 + AluJo SINE Alu 16 272 -40 220 45 30 76 chr6 123208707 123208731 -66070823 + (TTTAA)n Simple_repeat Simple_repeat 1 25 -38 2033 69 0 94 chr6 123208731 123209050 -66070504 - AluY SINE Alu -22 289 1 220 45 30 76 chr6 123209050 123209091 -66070463 + (TTTAA)n Simple_repeat Simple_repeat 25 63 0 342 316 58 35 chr6 123209858 123210029 -66069525 - MIR3 SINE MIR -14 194 20 2083 123 0 0 chr6 123210368 123210661 -66068893 - AluSx SINE Alu -19 293 1 645 226 87 51 chr6 123210688 123210883 -66068671 - MLT1K LTR MaLR -8 580 379 255 339 39 31 chr6 123210945 123211075 -66068479 - MLT1K LTR MaLR -300 288 158 318 261 81 9 chr6 123211616 123211727 -66067827 - LTR33A LTR ERVL -127 396 278 285 266 16 0 chr6 123211837 123211901 -66067653 - LTR33 LTR ERVL -442 79 15 1875 122 11 0 chr6 123211989 123212282 -66067272 + AluSx SINE Alu 9 304 0 829 161 0 0 chr6 123212305 123212442 -66067112 + FRAM SINE Alu 30 166 -10 2153 91 0 0 chr6 123212756 123213085 -66066469 - AluSx SINE Alu 0 329 1 28 0 0 0 chr6 123213129 123213157 -66066397 + AT_rich Low_complexity Low_complexity 1 28 0 236 269 0 13 chr6 123213187 123213265 -66066289 - L1M LINE L1 -695 5426 5350 2038 97 13 3 chr6 123213270 123213570 -66065984 - L1PA10 LINE L1 -3 6165 5863 1711 133 54 0 chr6 123213602 123213881 -66065673 + AluJb SINE Alu 1 294 -18 1073 137 6 11 chr6 123213941 123214123 -66065431 - AluSg/x SINE Alu -11 301 121 1954 135 0 0 chr6 123214927 123215265 -66064289 + AluJo SINE Alu 1 338 0 219 88 0 0 chr6 123215574 123215608 -66063946 + (CA)n Simple_repeat Simple_repeat 1 34 0 2138 85 7 0 chr6 123215656 123215937 -66063617 + AluSc SINE Alu 1 283 -26 29 0 0 0 chr6 123215937 123215966 -66063588 + AT_rich Low_complexity Low_complexity 1 29 0 279 333 16 24 chr6 123216558 123216684 -66062870 - L2 LINE L2 0 3272 3148 1865 145 3 3 chr6 123216842 123217138 -66062416 - AluSq SINE Alu -15 298 3 25 0 0 0 chr6 123217182 123217207 -66062347 + AT_rich Low_complexity Low_complexity 1 25 0 239 265 315 6 chr6 123218171 123218333 -66061221 + L2 LINE L2 2328 2539 -775 1722 129 86 0 chr6 123218337 123218615 -66060939 - AluJb SINE Alu -10 302 1 25 31 0 0 chr6 123219209 123219241 -66060313 + AT_rich Low_complexity Low_complexity 1 32 0 730 155 0 0 chr6 123219255 123219371 -66060183 - FLAM_C SINE Alu -17 116 1 311 286 205 35 chr6 123219413 123219584 -66059970 - MIR3 SINE MIR -6 202 3 1914 147 0 13 chr6 123219651 123219965 -66059589 - AluJb SINE Alu -2 310 1 2604 94 14 3 chr6 123220415 123220766 -66058788 + THE1A LTR MaLR 1 355 0 11667 100 9 4 chr6 123220766 123222337 -66057217 + THE1A-int LTR MaLR 1 1580 0 2851 63 11 0 chr6 123222337 123222688 -66056866 + THE1A LTR MaLR 1 355 0 4393 116 55 4 chr6 123223341 123224057 -66055497 - L1MA4A LINE L1 0 6303 5552 21 0 0 0 chr6 123224060 123224081 -66055473 + AT_rich Low_complexity Low_complexity 1 21 0 1413 67 5 0 chr6 123224081 123224274 -66055280 - L1MA1 LINE L1 -1 6301 6108 838 156 0 0 chr6 123224280 123224415 -66055139 + FLAM_C SINE Alu 6 140 -3 1571 171 0 33 chr6 123224431 123224730 -66054824 + AluJb SINE Alu 6 294 -18 762 102 0 0 chr6 123224730 123224838 -66054716 - L1MA1 LINE L1 -186 6116 6009 593 139 0 78 chr6 123224839 123224954 -66054600 - L1MA4A LINE L1 -738 5565 5460 877 106 68 0 chr6 123224954 123225086 -66054468 + AluJb SINE Alu 1 141 -171 530 145 14 23 chr6 123225118 123225238 -66054316 - L1MA4A LINE L1 -700 5466 5359 298 303 0 0 chr6 123225239 123225305 -66054249 + L2 LINE L2 3248 3313 0 809 135 16 8 chr6 123225312 123225438 -66054116 + AluJb SINE Alu 1 127 -185 1321 135 0 14 chr6 123225696 123225904 -66053650 + AluJo SINE Alu 1 205 -107 193 87 22 22 chr6 123225935 123225981 -66053573 + (TAAAAA)n Simple_repeat Simple_repeat 3 48 0 2325 91 0 3 chr6 123226139 123226446 -66053108 + AluSp SINE Alu 1 306 -7 2105 103 26 0 chr6 123226459 123226761 -66052793 + AluSq SINE Alu 1 310 -3 449 273 15 15 chr6 123227051 123227183 -66052371 - MIR SINE MIR -111 151 20 1800 147 98 14 chr6 123227425 123227771 -66051783 + THE1C LTR MaLR 1 375 0 10136 110 48 11 chr6 123227771 123228227 -66051327 + THE1C-int LTR MaLR 1 438 -1142 2254 104 0 0 chr6 123228227 123228534 -66051020 + AluY SINE Alu 3 309 -2 10136 110 48 11 chr6 123228534 123229600 -66049954 + THE1C-int LTR MaLR 438 1580 0 2004 117 65 49 chr6 123229600 123229941 -66049613 + THE1C LTR MaLR 1 335 -40 2884 126 30 110 chr6 123229941 123230141 -66049413 - MER41C LTR ERV1 0 554 340 402 21 0 0 chr6 123230141 123230188 -66049366 + (TG)n Simple_repeat Simple_repeat 2 48 0 2884 126 30 110 chr6 123230188 123230215 -66049339 - MER41C LTR ERV1 -214 340 312 1689 163 7 0 chr6 123230215 123230497 -66049057 + AluSx SINE Alu 9 292 -20 2884 126 30 110 chr6 123230497 123230608 -66048946 - MER41C LTR ERV1 -242 312 194 1858 93 31 17 chr6 123230608 123230899 -66048655 + AluY SINE Alu 17 311 0 2884 126 30 110 chr6 123230899 123231160 -66048394 - MER41C LTR ERV1 -360 194 1 2004 117 65 49 chr6 123231160 123231187 -66048367 + THE1C LTR MaLR 335 375 0 1690 69 211 0 chr6 123231396 123231642 -66047912 + AluY SINE Alu 1 298 -13 2244 107 0 0 chr6 123233576 123233884 -66045670 + AluSx SINE Alu 1 308 -4 596 254 8 0 chr6 123235529 123235655 -66043899 - AluJb SINE Alu -55 257 131 360 0 0 0 chr6 123236080 123236120 -66043434 + (TG)n Simple_repeat Simple_repeat 2 41 0 2008 131 3 0 chr6 123236174 123236471 -66043083 + AluSq SINE Alu 1 298 -15 938 176 0 0 chr6 123236584 123236749 -66042805 + FRAM SINE Alu 1 164 -12 2476 48 3 6 chr6 123236751 123237063 -66042491 + AluY SINE Alu 1 311 0 403 265 103 99 chr6 123237197 123237469 -66042085 + L2 LINE L2 2422 2694 -620 1931 114 32 0 chr6 123237469 123237749 -66041805 - AluSx SINE Alu -15 297 9 207 68 45 23 chr6 123237784 123237828 -66041726 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2015 113 14 0 chr6 123238386 123238678 -66040876 - AluSx SINE Alu -16 296 1 1735 178 31 60 chr6 123238870 123239252 -66040302 + MLT1A2 LTR MaLR 4 374 0 2146 118 0 0 chr6 123239371 123239675 -66039879 + AluSx SINE Alu 1 304 -8 411 227 37 104 chr6 123240045 123240161 -66039393 - L1ME1 LINE L1 -2 6164 6042 1314 188 112 22 chr6 123240161 123240438 -66039116 + AluJb SINE Alu 1 302 0 1658 142 6 62 chr6 123240442 123240765 -66038789 + AluJo SINE Alu 1 305 -7 411 227 37 104 chr6 123240765 123240806 -66038748 - L1ME1 LINE L1 -127 6039 6013 255 250 16 47 chr6 123241304 123241368 -66038186 + L2 LINE L2 3118 3179 -93 1561 159 71 17 chr6 123241568 123241863 -66037691 - AluJb SINE Alu -1 311 1 194 170 0 21 chr6 123241966 123242013 -66037541 + (TA)n Simple_repeat Simple_repeat 1 46 0 1543 165 3 44 chr6 123242186 123242507 -66037047 - AluJo SINE Alu -4 308 1 1134 123 12 0 chr6 123242883 123243046 -66036508 - AluSg/x SINE Alu -14 296 132 1884 150 7 0 chr6 123243046 123243352 -66036202 - AluSx SINE Alu -2 310 3 512 211 147 32 chr6 123243645 123243801 -66035753 - MER117 DNA MER1_type -6 191 18 2213 74 33 0 chr6 123243820 123244119 -66035435 + AluY SINE Alu 1 309 -2 863 191 0 0 chr6 123244578 123244740 -66034814 - FAM SINE Alu -6 43 1 1113 279 68 47 chr6 123244818 123245244 -66034310 + LTR16A LTR ERVL 16 450 0 2174 107 0 0 chr6 123245330 123245621 -66033933 + AluSq SINE Alu 1 291 -22 458 235 72 95 chr6 123245678 123246069 -66033485 - LTR15 LTR ERV1 0 493 112 2739 53 12 0 chr6 123246290 123246630 -66032924 - LTR14A LTR ERVK 0 344 1 842 203 98 47 chr6 123246872 123247148 -66032406 - LTR19C LTR ERV1 0 779 490 * 1502 217 9 86 chr6 123247126 123247554 -66032000 - LTR9 LTR ERV1 -217 395 1 2004 169 0 3 chr6 123247783 123248090 -66031464 - AluJb SINE Alu -6 306 1 3485 118 149 49 chr6 123248198 123248894 -66030660 - MER4E LTR ERV1 0 766 1 186 43 0 0 chr6 123249021 123249044 -66030510 + (CTA)n Simple_repeat Simple_repeat 1 23 0 357 270 194 22 chr6 123249056 123249158 -66030396 - L1MC4a LINE L1 -874 6934 6851 3790 95 3 64 chr6 123249158 123249748 -66029806 + MER41A LTR ERV1 1 554 0 357 270 194 22 chr6 123249748 123249867 -66029687 - L1MC4a LINE L1 -957 6851 6675 202 240 94 94 chr6 123250043 123250110 -66029444 + MER91B DNA MER1_type 35 104 -86 2059 139 3 0 chr6 123250110 123250405 -66029149 + AluSq SINE Alu 1 296 -17 202 240 94 94 chr6 123250405 123250433 -66029121 + MER91B DNA MER1_type 103 130 -60 2120 127 23 10 chr6 123250438 123250746 -66028808 - AluSx SINE Alu 0 312 1 257 195 12 134 chr6 123250776 123250826 -66028728 + MER91B DNA MER1_type 92 130 -60 726 190 0 29 chr6 123250826 123250963 -66028591 - FLAM_C SINE Alu 0 133 1 257 195 12 134 chr6 123250963 123250994 -66028560 + MER91B DNA MER1_type 130 163 -27 511 171 23 0 chr6 123251478 123251566 -66027988 + U17 snRNA snRNA 1 90 -117 2338 122 0 0 chr6 123251633 123251944 -66027610 + AluSx SINE Alu 1 311 -1 954 241 16 0 chr6 123252240 123252493 -66027061 + L1MEc LINE L1 752 1008 -5388 1719 150 11 11 chr6 123252497 123252783 -66026771 - AluJb SINE Alu -12 300 15 306 180 0 0 chr6 123252795 123252856 -66026698 + (TA)n Simple_repeat Simple_repeat 1 61 0 242 303 13 13 chr6 123252878 123252954 -66026600 + MIR SINE MIR 44 119 -89 2525 87 3 0 chr6 123253413 123253724 -66025830 - AluSx SINE Alu 0 312 1 2127 132 6 13 chr6 123253733 123254044 -66025510 - AluSx SINE Alu 0 312 4 214 244 0 138 chr6 123254044 123254167 -66025387 + L2 LINE L2 2994 3099 -173 300 305 29 0 chr6 123255190 123255295 -66024259 - MIR SINE MIR -19 243 136 896 119 8 15 chr6 123255416 123255550 -66024004 - FLAM_C SINE Alu 0 133 1 1965 144 7 0 chr6 123256102 123256407 -66023147 + AluJb SINE Alu 2 308 -4 203 167 42 97 chr6 123256981 123257053 -66022501 + MER5A DNA MER1_type 7 74 -115 1968 145 13 10 chr6 123257055 123257365 -66022189 + AluSx SINE Alu 1 311 -1 374 220 11 11 chr6 123257382 123257473 -66022081 - MER5A DNA MER1_type -56 133 43 197 231 198 11 chr6 123257584 123257675 -66021879 + MIR SINE MIR 46 153 -109 1417 90 0 16 chr6 123258178 123258191 -66021363 + AluSp SINE Alu 121 133 -180 2498 60 0 0 chr6 123258191 123258491 -66021063 + AluY SINE Alu 1 300 -11 1417 90 0 16 chr6 123258491 123258666 -66020888 + AluSp SINE Alu 133 306 -7 743 170 0 41 chr6 123258995 123259142 -66020412 - FLAM_C SINE Alu -1 142 2 207 0 0 0 chr6 123259332 123259355 -66020199 + (A)n Simple_repeat Simple_repeat 1 23 0 1614 95 112 85 chr6 123259359 123259654 -66019900 + AluSx SINE Alu 1 303 -9 845 138 0 16 chr6 123259663 123259786 -66019768 - FLAM_C SINE Alu -22 121 1 973 136 7 0 chr6 123260015 123260155 -66019399 - AluJo SINE Alu -171 141 1 494 244 235 13 chr6 123260256 123260494 -66019060 - L2 LINE L2 -1 3312 3022 1848 182 0 10 chr6 123260551 123260858 -66018696 - AluJo SINE Alu -8 304 1 328 250 12 0 chr6 123260908 123260992 -66018562 - MIR SINE MIR -71 191 107 284 262 9 106 chr6 123261131 123261308 -66018246 - MIR SINE MIR -56 206 45 1994 131 0 14 chr6 123261438 123261721 -66017833 + AluSx SINE Alu 1 279 -33 236 111 22 0 chr6 123261724 123261769 -66017785 + (CAA)n Simple_repeat Simple_repeat 2 47 0 1969 174 0 0 chr6 123262086 123262397 -66017157 + AluJo SINE Alu 1 311 -1 1736 162 0 39 chr6 123263015 123263324 -66016230 + AluJb SINE Alu 1 297 -15 814 163 0 15 chr6 123263570 123263705 -66015849 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr6 123263711 123263735 -66015819 + AT_rich Low_complexity Low_complexity 1 24 0 234 230 68 0 chr6 123263783 123263857 -66015697 - MER103 DNA DNA -7 159 81 1878 157 93 103 chr6 123264050 123264644 -66014910 + LTR38B LTR ERV1 4 591 -19 1258 180 5 0 chr6 123265193 123265329 -66014225 + AluSx SINE Alu 1 140 -172 2563 54 0 0 chr6 123265329 123265626 -66013928 + AluY SINE Alu 1 297 -14 1258 180 5 0 chr6 123265626 123265700 -66013854 + AluSx SINE Alu 140 212 -100 965 123 0 49 chr6 123265713 123265842 -66013712 + AluSg/x SINE Alu 154 275 -37 251 36 18 54 chr6 123265842 123265898 -66013656 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 965 123 0 49 chr6 123265898 123265931 -66013623 + AluSg/x SINE Alu 275 308 -4 450 311 7 0 chr6 123265945 123266096 -66013458 + MIR SINE MIR 33 184 -78 1658 173 33 0 chr6 123266647 123266919 -66012635 + AluJb SINE Alu 1 281 -31 528 100 0 0 chr6 123266919 123266999 -66012555 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 398 278 218 14 chr6 123267079 123267295 -66012259 - MIR SINE MIR -1 261 2 2309 92 13 0 chr6 123267428 123267733 -66011821 - AluSq SINE Alu -4 309 1 338 277 223 0 chr6 123267867 123268015 -66011539 + MER5A DNA MER1_type 9 189 0 381 200 279 29 chr6 123268273 123268413 -66011141 - MER5B DNA MER1_type -3 175 1 2354 103 0 6 chr6 123268480 123268791 -66010763 - AluSq SINE Alu -4 309 1 195 192 115 96 chr6 123269134 123269238 -66010316 + L2 LINE L2 3208 3313 0 306 222 14 0 chr6 123269480 123269552 -66010002 + MER5A DNA MER1_type 14 86 -103 275 293 10 20 chr6 123269651 123269750 -66009804 - MER5A DNA MER1_type -75 114 17 * 481 154 33 0 chr6 123269661 123269752 -66009802 + MER5A DNA MER1_type 96 189 0 36 70 0 0 chr6 123269891 123269962 -66009592 + AT_rich Low_complexity Low_complexity 1 71 0 2132 114 38 0 chr6 123270070 123270360 -66009194 + AluSx SINE Alu 1 301 -11 1171 117 0 0 chr6 123270363 123270517 -66009037 + AluSg/x SINE Alu 131 284 -28 2066 194 29 0 chr6 123270744 123271125 -66008429 - MER89 LTR ERV1 -2 557 166 2225 107 0 0 chr6 123271458 123271747 -66007807 - AluSg SINE Alu -21 289 1 854 256 113 29 chr6 123271817 123271929 -66007625 + MER69 DNA AcHobo 292 393 -2133 1749 141 125 0 chr6 123271929 123272234 -66007320 - MER61A LTR ERV1 0 343 1 854 256 113 29 chr6 123272234 123272430 -66007124 + MER69 DNA AcHobo 393 626 -1900 2830 143 22 26 chr6 123272446 123272951 -66006603 + MER41B LTR ERV1 1 503 -132 2293 97 0 7 chr6 123272951 123273260 -66006294 - AluY SINE Alu -4 307 1 1518 174 15 109 chr6 123273554 123273956 -66005598 - MLT1A1 LTR MaLR -1 364 1 578 190 43 0 chr6 123274089 123274205 -66005349 + FLAM_C SINE Alu 5 125 -18 2389 95 0 3 chr6 123274953 123275257 -66004297 + AluSq SINE Alu 1 303 -10 1100 127 6 0 chr6 123275257 123275414 -66004140 + AluSg/x SINE Alu 132 289 -21 2110 117 0 0 chr6 123275579 123275862 -66003692 - AluSx SINE Alu -9 303 21 1688 93 5 0 chr6 123275930 123276144 -66003410 - AluSg/x SINE Alu -16 296 82 2286 101 3 0 chr6 123276242 123276538 -66003016 + AluSx SINE Alu 2 298 -14 324 286 91 35 chr6 123277804 123278003 -66001551 + MIR SINE MIR 16 225 -37 1880 76 60 0 chr6 123278104 123278354 -66001200 - AluSg SINE Alu -45 265 1 1345 64 0 0 chr6 123278448 123278605 -66000949 - AluSg SINE Alu -153 157 1 216 135 0 0 chr6 123279064 123279101 -66000453 + (CGG)n Simple_repeat Simple_repeat 2 38 0 521 181 63 31 chr6 123281132 123281259 -65998295 - FLAM_A SINE Alu -1 132 2 1873 143 11 0 chr6 123281342 123281655 -65997899 - AluSx SINE Alu 0 316 1 1828 78 20 20 chr6 123281797 123282052 -65997502 + AluSq SINE Alu 1 255 -58 381 242 158 0 chr6 123282059 123282179 -65997375 - MIR SINE MIR -96 166 28 558 231 148 9 chr6 123282546 123282762 -65996792 + MER46C DNA MER2_type 39 284 -54 6695 52 10 51 chr6 123282778 123283884 -65995670 - SVA Other Other -551 1383 433 2169 108 0 3 chr6 123283987 123284282 -65995272 - AluSx SINE Alu -18 294 1 2140 133 0 0 chr6 123284482 123284783 -65994771 - AluSx SINE Alu -11 301 1 564 279 6 38 chr6 123285225 123285269 -65994285 - MER5B DNA MER1_type -1 177 133 2335 66 35 0 chr6 123285269 123285557 -65993997 - AluY SINE Alu -13 298 1 564 279 6 38 chr6 123285557 123285695 -65993859 - MER5B DNA MER1_type -45 133 1 365 250 65 0 chr6 123286525 123286617 -65992937 + MIR SINE MIR 40 137 -125 2277 184 65 13 chr6 123286676 123287323 -65992231 - L1M4 LINE L1 -3341 3041 2345 1896 150 3 23 chr6 123287323 123287630 -65991924 + AluJo SINE Alu 1 301 -11 2277 184 65 13 chr6 123287630 123287759 -65991795 - L1M4 LINE L1 -4037 2345 2224 694 167 15 23 chr6 123287761 123287893 -65991661 - FLAM_C SINE Alu -4 139 9 1603 114 53 18 chr6 123287898 123288160 -65991394 - L1M4 LINE L1 -4150 2234 1960 1768 147 292 20 chr6 123288160 123288649 -65990905 - LTR29 LTR ERV1 0 622 1 1603 114 53 18 chr6 123288649 123288667 -65990887 - L1M4 LINE L1 -4424 1960 1944 507 191 0 0 chr6 123288664 123288753 -65990801 - L1M4 LINE L1 -6178 206 118 * 359 307 22 17 chr6 123288824 123289003 -65990551 - MIR SINE MIR -81 181 2 831 191 7 7 chr6 123289677 123289829 -65989725 - AluJb SINE Alu -21 291 140 1408 153 14 0 chr6 123289934 123290156 -65989398 - AluJb SINE Alu -2 310 86 2065 103 0 0 chr6 123290252 123290515 -65989039 - AluSx SINE Alu -27 285 23 1830 104 108 8 chr6 123290754 123291022 -65988532 + AluSx SINE Alu 1 295 -17 2290 99 0 0 chr6 123291024 123291338 -65988216 + AluSg SINE Alu 1 314 0 2422 81 3 3 chr6 123291655 123291962 -65987592 + AluSc SINE Alu 1 307 -2 2805 16 0 10 chr6 123292027 123292341 -65987213 - AluYa5 SINE Alu 0 311 1 180 365 14 27 chr6 123292410 123292484 -65987070 - L2 LINE L2 -66 3206 3134 1209 244 107 100 chr6 123292503 123292533 -65987021 + L2 LINE L2 2229 2257 -1056 1996 152 10 3 chr6 123292533 123292843 -65986711 - AluSx SINE Alu 0 312 1 1209 244 107 100 chr6 123292843 123293675 -65985879 + L2 LINE L2 2257 3101 -212 4156 134 55 9 chr6 123293686 123294373 -65985181 + Tigger2 DNA MER2_type 7 725 -1993 1689 92 48 20 chr6 123294415 123294666 -65984888 + Tigger2 DNA MER2_type 2461 2718 0 333 252 194 7 chr6 123294666 123294805 -65984749 + L2 LINE L2 3149 3313 0 208 239 150 53 chr6 123294808 123294921 -65984633 - L2 LINE L2 -2 3270 3147 22 0 0 0 chr6 123295250 123295272 -65984282 + AT_rich Low_complexity Low_complexity 1 22 0 777 152 4 188 chr6 123295726 123296003 -65983551 - AluJo SINE Alu 0 312 87 192 125 0 0 chr6 123296609 123296641 -65982913 + (TG)n Simple_repeat Simple_repeat 1 32 0 863 223 56 0 chr6 123296652 123296849 -65982705 + MER20 DNA MER1_type 12 219 0 1668 109 65 48 chr6 123297482 123297776 -65981778 - AluSx SINE Alu 0 312 14 507 221 10 0 chr6 123297786 123297890 -65981664 + Charlie2a DNA MER1_type 1529 1633 -1229 1696 194 3 0 chr6 123297964 123298258 -65981296 - AluJo SINE Alu -17 295 1 2197 89 30 17 chr6 123298400 123298702 -65980852 + AluSx SINE Alu 1 306 -6 1736 155 34 24 chr6 123298714 123299011 -65980543 + AluJb SINE Alu 1 300 -12 469 143 76 8 chr6 123299070 123299189 -65980365 + Charlie2 DNA MER1_type 2593 2719 -143 4330 124 51 19 chr6 123299192 123299833 -65979721 + L1PA16 LINE L1 5116 5794 -372 2455 76 0 10 chr6 123299833 123300135 -65979419 + AluSp SINE Alu 1 299 -14 4330 124 51 19 chr6 123300135 123300398 -65979156 + L1PA16 LINE L1 5794 6047 -119 22 35 0 0 chr6 123301244 123301273 -65978281 + AT_rich Low_complexity Low_complexity 1 29 0 987 224 122 80 chr6 123301307 123301439 -65978115 - L1MC4 LINE L1 -258 7784 7659 258 56 0 0 chr6 123301439 123301475 -65978079 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 7076 21 3 353 chr6 123301475 123303573 -65975981 - SVA Other Other -23 1363 1 987 224 122 80 chr6 123303573 123303872 -65975682 - L1MC4 LINE L1 -383 7659 7326 2452 182 50 4 chr6 123303872 123304355 -65975199 - MLT1D LTR MaLR 0 505 1 987 224 122 80 chr6 123304355 123304411 -65975143 - L1MC4 LINE L1 -716 7326 7274 * 1074 218 32 68 chr6 123304408 123304716 -65974838 - L1MC4a LINE L1 -1070 6738 6442 262 274 27 0 chr6 123304811 123304884 -65974670 - MLT1G LTR MaLR -300 290 216 22 56 0 0 chr6 123304952 123304988 -65974566 + AT_rich Low_complexity Low_complexity 1 36 0 1934 93 8 0 chr6 123305495 123305753 -65973801 - AluY SINE Alu -13 298 39 2116 97 10 48 chr6 123305900 123306211 -65973343 - AluSq SINE Alu -14 299 1 1949 147 34 0 chr6 123306253 123306546 -65973008 - AluSx SINE Alu -9 303 1 2387 77 13 0 chr6 123306632 123306930 -65972624 - AluSp SINE Alu -11 302 1 28 0 0 0 chr6 123306933 123306961 -65972593 + AT_rich Low_complexity Low_complexity 1 28 0 641 103 0 0 chr6 123306988 123307085 -65972469 + FLAM_A SINE Alu 46 142 0 460 198 0 0 chr6 123307085 123307171 -65972383 - U6 snRNA snRNA -9 98 13 226 143 0 0 chr6 123307171 123307206 -65972348 - U6 snRNA snRNA -72 35 1 518 286 74 5 chr6 123308193 123308382 -65971172 - MIR SINE MIR -2 260 59 1981 127 3 23 chr6 123308741 123309048 -65970506 - AluJb SINE Alu -1 311 11 1143 231 84 10 chr6 123309251 123309562 -65969992 - MER2 DNA MER2_type -7 338 5 2133 93 0 30 chr6 123309893 123310193 -65969361 + AluSx SINE Alu 1 291 -21 550 194 10 0 chr6 123310721 123310824 -65968730 + AluJb SINE Alu 137 240 -72 1794 100 120 8 chr6 123311141 123311400 -65968154 + AluSg1 SINE Alu 1 288 -21 266 216 91 125 chr6 123311745 123311977 -65967577 - L1ME LINE L1 -282 5839 5616 215 327 45 36 chr6 123312085 123312195 -65967359 - L2 LINE L2 -14 3258 3148 2168 69 55 0 chr6 123312687 123312962 -65966592 - AluY SINE Alu -21 290 1 2453 78 0 0 chr6 123312982 123313276 -65966278 - AluY SINE Alu -17 294 1 1379 185 47 25 chr6 123313439 123313715 -65965839 + AluJo SINE Alu 1 282 -30 1239 192 131 8 chr6 123313845 123314105 -65965449 + AluSx SINE Alu 1 292 -20 207 213 0 21 chr6 123314117 123314164 -65965390 - MIR3 SINE MIR -10 198 153 25 0 0 0 chr6 123314164 123314189 -65965365 + AT_rich Low_complexity Low_complexity 1 25 0 298 53 0 0 chr6 123314189 123314227 -65965327 - LTR23 LTR ERV1 -76 361 324 26 0 0 0 chr6 123314240 123314266 -65965288 + AT_rich Low_complexity Low_complexity 1 26 0 1829 148 7 10 chr6 123314725 123315016 -65964538 - AluSx SINE Alu -2 310 21 263 273 45 0 chr6 123315074 123315140 -65964414 + L2 LINE L2 3225 3293 -20 1817 188 7 0 chr6 123315507 123315805 -65963749 + AluJb SINE Alu 1 300 -12 21 0 0 0 chr6 123315818 123315839 -65963715 + AT_rich Low_complexity Low_complexity 1 21 0 12816 128 48 29 chr6 123316652 123316808 -65962746 - Tigger1 DNA MER2_type 0 2418 2266 2450 71 0 10 chr6 123316808 123317117 -65962437 - AluY SINE Alu -5 306 1 12816 128 48 29 chr6 123317117 123317407 -65962147 - Tigger1 DNA MER2_type -152 2266 1983 2430 93 0 0 chr6 123317407 123317718 -65961836 - AluY SINE Alu 0 311 1 12816 128 48 29 chr6 123317718 123318048 -65961506 - Tigger1 DNA MER2_type -435 1983 1661 2277 109 3 3 chr6 123318048 123318359 -65961195 + AluSx SINE Alu 1 311 -1 12816 128 48 29 chr6 123318359 123318538 -65961016 - Tigger1 DNA MER2_type -757 1661 1487 1859 138 11 0 chr6 123318538 123318814 -65960740 - AluSx SINE Alu -1 311 33 12816 128 48 29 chr6 123318814 123319818 -65959736 - Tigger1 DNA MER2_type -931 1487 401 3588 111 2 6 chr6 123319818 123320330 -65959224 - MER9 LTR ERVK -1 510 1 12816 128 48 29 chr6 123320330 123320709 -65958845 - Tigger1 DNA MER2_type -2017 401 31 225 163 0 0 chr6 123320746 123320789 -65958765 - MER113 DNA MER1_type? -475 46 4 21 0 0 0 chr6 123324218 123324239 -65955315 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr6 123324653 123324673 -65954881 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 1869 125 3 35 chr6 123324673 123324960 -65954594 - AluSx SINE Alu -29 283 6 908 262 20 25 chr6 123325557 123325801 -65953753 + MIR SINE MIR 7 249 -13 691 150 25 0 chr6 123326038 123326158 -65953396 + FRAM SINE Alu 33 155 -21 1352 129 236 8 chr6 123326248 123326489 -65953065 + AluSg1 SINE Alu 1 296 -13 230 164 0 96 chr6 123326514 123326587 -65952967 + L1MC4 LINE L1 6636 6701 -1341 242 243 28 21 chr6 123326599 123326743 -65952811 + (TATG)n Simple_repeat Simple_repeat 2 146 0 1662 184 40 7 chr6 123326776 123327075 -65952479 - AluJo SINE Alu -3 309 1 231 290 87 0 chr6 123327540 123327609 -65951945 - L2 LINE L2 -3 3310 3236 1984 145 3 31 chr6 123327856 123328173 -65951381 - AluJo SINE Alu -4 308 1 23 33 0 0 chr6 123328437 123328467 -65951087 + AT_rich Low_complexity Low_complexity 1 30 0 739 267 112 4 chr6 123328590 123328822 -65950732 - MIR SINE MIR -5 257 1 22 0 0 0 chr6 123329040 123329062 -65950492 + AT_rich Low_complexity Low_complexity 1 22 0 307 266 239 0 chr6 123329532 123329641 -65949913 - MIR SINE MIR -126 136 2 1931 130 3 50 chr6 123329665 123329964 -65949590 - AluSg SINE Alu -17 293 9 342 211 55 18 chr6 123330027 123330136 -65949418 - MER103 DNA DNA -49 117 5 2228 103 121 40 chr6 123330882 123331278 -65948276 - MSTA LTR MaLR 0 428 1 490 132 0 0 chr6 123332215 123332283 -65947271 - AluS SINE Alu -244 68 1 2049 109 0 0 chr6 123332825 123333099 -65946455 - AluSg SINE Alu -6 304 31 2293 84 0 0 chr6 123333120 123333405 -65946149 - AluSg SINE Alu -9 301 17 22 0 0 0 chr6 123333543 123333565 -65945989 + AT_rich Low_complexity Low_complexity 1 22 0 1350 197 4 20 chr6 123333580 123333829 -65945725 - AluJo SINE Alu -56 256 12 25 31 0 0 chr6 123335532 123335564 -65943990 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr6 123336582 123336606 -65942948 + AT_rich Low_complexity Low_complexity 1 24 0 1871 138 0 21 chr6 123336606 123336897 -65942657 - AluJb SINE Alu -25 287 3 908 118 0 22 chr6 123336958 123337094 -65942460 + FLAM_C SINE Alu 1 133 0 294 228 248 0 chr6 123337154 123337255 -65942299 - L2 LINE L2 0 3313 3188 2065 102 11 14 chr6 123337510 123337825 -65941729 - AluSx SINE Alu 0 314 1 183 100 0 0 chr6 123338532 123338562 -65940992 + (TTTTA)n Simple_repeat Simple_repeat 4 33 0 294 301 108 38 chr6 123338908 123338983 -65940571 + MIR SINE MIR 47 115 -147 1828 137 27 7 chr6 123338983 123339276 -65940278 - AluSg SINE Alu -11 299 1 294 301 108 38 chr6 123339276 123339386 -65940168 + MIR SINE MIR 115 245 -17 23 33 0 0 chr6 123339386 123339416 -65940138 + AT_rich Low_complexity Low_complexity 1 30 0 310 300 45 0 chr6 123340000 123340110 -65939444 - L1ME4a LINE L1 0 6121 6007 315 161 0 0 chr6 123340204 123340260 -65939294 + CT-rich Low_complexity Low_complexity 1 56 0 2286 99 7 3 chr6 123340260 123340562 -65938992 - AluSq SINE Alu -10 303 1 2080 118 0 20 chr6 123340781 123341077 -65938477 - AluSx SINE Alu -22 290 1 1863 168 0 3 chr6 123341079 123341376 -65938178 - AluSx SINE Alu -16 296 1 779 142 8 22 chr6 123341383 123341517 -65938037 - FLAM_C SINE Alu 0 133 2 813 145 30 8 chr6 123341701 123341832 -65937722 - AluSq/x SINE Alu -178 134 1 254 238 32 0 chr6 123342112 123342175 -65937379 + L1MC5 LINE L1 7031 7095 -866 465 247 260 0 chr6 123342225 123342375 -65937179 - MER58A DNA MER1_type -1 223 35 724 109 0 10 chr6 123342386 123342487 -65937067 + FLAM_A SINE Alu 31 130 -12 792 178 0 0 chr6 123342738 123342867 -65936687 - FLAM_C SINE Alu -4 129 1 180 111 0 0 chr6 123343783 123343810 -65935744 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1846 202 156 29 chr6 123343810 123344102 -65935452 - L1ME2 LINE L1 -13 6151 5897 441 0 0 0 chr6 123344102 123344151 -65935403 + (TG)n Simple_repeat Simple_repeat 2 50 0 1846 202 156 29 chr6 123344151 123344632 -65934922 - L1ME2 LINE L1 -267 5897 5249 348 269 175 21 chr6 123344732 123344966 -65934588 - L1ME2 LINE L1 -1029 5117 4848 22274 86 16 5 chr6 123344971 123349497 -65930057 + L1PA7 LINE L1 718 5299 -1162 6450 19 0 1 chr6 123349499 123350196 -65929358 - L1PA2 LINE L1 -3 6152 5457 * 7582 56 3 1 chr6 123350195 123351399 -65928155 + L1PA7 LINE L1 5283 6468 -1 4232 250 83 20 chr6 123351412 123352991 -65926563 - L1ME2 LINE L1 -1308 4838 3151 1793 104 67 67 chr6 123352991 123353290 -65926264 - AluSx SINE Alu -13 299 1 4232 250 83 20 chr6 123353290 123353354 -65926200 - L1ME2 LINE L1 -2995 3151 3092 1557 189 13 50 chr6 123353428 123353746 -65925808 - AluJo SINE Alu -6 306 1 21 57 0 0 chr6 123354377 123354412 -65925142 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr6 123355976 123355999 -65923555 + AT_rich Low_complexity Low_complexity 1 23 0 1099 170 0 6 chr6 123357369 123357534 -65922020 + FRAM SINE Alu 1 164 -2 2187 110 7 0 chr6 123357634 123357926 -65921628 + AluSp SINE Alu 1 294 -19 1243 118 11 0 chr6 123357927 123358105 -65921449 + AluSg/x SINE Alu 133 312 0 2138 128 3 0 chr6 123358388 123358685 -65920869 - AluSp SINE Alu -15 298 1 184 299 150 34 chr6 123358892 123359039 -65920515 - MIR SINE MIR 0 262 99 469 200 147 113 chr6 123359061 123359211 -65920343 + MER58A DNA MER1_type 1 155 0 1952 143 10 19 chr6 123359517 123359825 -65919729 + AluJb SINE Alu 1 305 -7 268 109 0 0 chr6 123360148 123360194 -65919360 - LTR66 LTR ERVL -171 439 394 256 272 0 0 chr6 123360160 123360241 -65919313 + LTR66 LTR ERVL 398 478 -132 * 220 299 15 15 chr6 123360436 123360503 -65919051 - L2 LINE L2 -2 3311 3245 180 77 0 0 chr6 123360566 123360592 -65918962 + (T)n Simple_repeat Simple_repeat 1 26 0 269 287 221 50 chr6 123361343 123361524 -65918030 - L1MC/D LINE L1 -2163 5645 5434 1829 123 31 41 chr6 123361551 123361844 -65917710 - AluJb SINE Alu -22 290 1 448 245 21 90 chr6 123361861 123362094 -65917460 - L1MC4 LINE L1 -17 8025 7809 853 182 0 0 chr6 123362095 123362238 -65917316 + FLAM_C SINE Alu 1 143 0 423 276 40 52 chr6 123362241 123362415 -65917139 - L1MC4 LINE L1 -226 7816 7645 1000 159 18 12 chr6 123362415 123362578 -65916976 + AluJb SINE Alu 135 298 -14 858 258 129 33 chr6 123362586 123362634 -65916920 - L1MC4 LINE L1 -391 7651 7609 2524 70 0 6 chr6 123362634 123362946 -65916608 - AluY SINE Alu -1 310 1 858 258 129 33 chr6 123362946 123363324 -65916230 - L1MC4 LINE L1 -433 7609 7184 198 0 0 0 chr6 123367464 123367486 -65912068 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chr6 123368026 123368061 -65911493 + AT_rich Low_complexity Low_complexity 1 35 0 311 250 38 12 chr6 123368405 123368485 -65911069 - L2 LINE L2 -6 3307 3226 2111 131 0 10 chr6 123368648 123368962 -65910592 - AluSx SINE Alu -1 311 1 516 123 123 34 chr6 123369374 123369553 -65910001 + Charlie7 DNA MER1_type 2418 2612 0 1394 161 79 24 chr6 123370273 123370565 -65908989 - AluJo SINE Alu -4 308 1 1310 227 94 50 chr6 123370762 123371198 -65908356 - LTR40b LTR ERVL -7 455 1 474 18 0 0 chr6 123373235 123373290 -65906264 + (CA)n Simple_repeat Simple_repeat 2 56 0 869 188 0 0 chr6 123373522 123373666 -65905888 + AluJb SINE Alu 138 281 -31 3102 196 73 25 chr6 123375128 123375520 -65904034 + L1MB3 LINE L1 3995 4367 -1779 2349 87 40 92 chr6 123375520 123375900 -65903654 + THE1B LTR MaLR 1 360 -4 3102 196 73 25 chr6 123375900 123375933 -65903621 + L1MB3 LINE L1 4367 4397 -1749 1792 145 0 0 chr6 123375933 123376195 -65903359 + AluSx SINE Alu 51 312 0 3102 196 73 25 chr6 123376195 123376512 -65903042 + L1MB3 LINE L1 4397 4773 -1373 * 43727 33 21 3 chr6 123376510 123382543 -65897011 + L1PA3 LINE L1 8 6155 0 183 129 0 0 chr6 123382546 123382577 -65896977 + (A)n Simple_repeat Simple_repeat 1 31 0 5093 153 15 41 chr6 123382588 123383969 -65895585 + L1MB3 LINE L1 4762 6112 -71 2344 95 0 7 chr6 123383969 123384273 -65895281 - AluSq SINE Alu -11 302 1 5093 153 15 41 chr6 123384273 123384344 -65895210 + L1MB3 LINE L1 6112 6183 0 1524 251 30 30 chr6 123384370 123384936 -65894618 + L1ME3A LINE L1 4764 5329 -817 626 322 104 17 chr6 123384968 123385372 -65894182 - LTR16A LTR ERVL -4 446 8 1609 259 83 81 chr6 123385376 123385786 -65893768 + L1ME3A LINE L1 5343 5751 -419 1605 219 132 52 chr6 123385786 123386288 -65893266 + MLT1F LTR MaLR 1 542 0 1609 259 83 81 chr6 123386288 123386308 -65893246 + L1ME3A LINE L1 5751 5769 -401 2158 67 0 60 chr6 123386308 123386642 -65892912 + AluSg SINE Alu 1 316 0 1609 259 83 81 chr6 123386642 123387026 -65892528 + L1ME3A LINE L1 5769 6161 -9 654 227 128 33 chr6 123387030 123387272 -65892282 - L2 LINE L2 -1483 1831 1567 1280 152 41 67 chr6 123387487 123387756 -65891798 - MLT2D LTR ERVL -46 368 107 1140 153 118 13 chr6 123387759 123387988 -65891566 - AluJb SINE Alu -15 297 45 685 171 0 0 chr6 123387993 123388104 -65891450 - MLT2D LTR ERVL -300 114 4 782 166 42 62 chr6 123389326 123389519 -65890035 + MER53 DNA DNA 1 189 0 1935 161 0 3 chr6 123389735 123390039 -65889515 - AluJb SINE Alu -9 303 1 1644 175 17 84 chr6 123390640 123391058 -65888496 - MLT1B LTR MaLR 0 390 1 2045 112 35 3 chr6 123392018 123392305 -65887249 - AluSx SINE Alu -16 296 1 33 25 0 0 chr6 123392305 123392345 -65887209 + AT_rich Low_complexity Low_complexity 1 40 0 810 183 0 0 chr6 123392347 123392478 -65887076 - FLAM_C SINE Alu -11 132 2 1370 179 0 4 chr6 123392612 123392841 -65886713 - AluJo SINE Alu -82 230 3 228 67 0 0 chr6 123393304 123393334 -65886220 + (TC)n Simple_repeat Simple_repeat 1 30 0 743 219 74 37 chr6 123393947 123394216 -65885338 - L1MCa LINE L1 -4928 1498 1220 * 3063 232 50 10 chr6 123394212 123394565 -65884989 + L1M4 LINE L1 2242 2579 -3567 1712 126 20 4 chr6 123394565 123394812 -65884742 + AluSx SINE Alu 1 251 -61 3063 232 50 10 chr6 123394812 123395353 -65884201 + L1M4 LINE L1 2579 3172 -2974 704 251 174 0 chr6 123395554 123395749 -65883805 - MIR SINE MIR -6 256 28 716 215 0 0 chr6 123395949 123396079 -65883475 - FLAM_A SINE Alu -2 131 2 825 251 74 55 chr6 123396456 123396782 -65882772 + L2 LINE L2 2982 3313 0 271 246 0 0 chr6 123397065 123397122 -65882432 - L2 LINE L2 -7 3306 3250 42 57 0 0 chr6 123397270 123397340 -65882214 + AT_rich Low_complexity Low_complexity 1 70 0 819 165 0 0 chr6 123397371 123397492 -65882062 + FLAM_C SINE Alu 5 125 -18 272 280 160 16 chr6 123397673 123397798 -65881756 - HAL1 LINE L1 -31 2476 2334 1787 149 31 3 chr6 123397803 123398241 -65881313 - AluJb SINE Alu 0 446 1 496 230 97 37 chr6 123398241 123398458 -65881096 - HAL1 LINE L1 -158 2349 2120 232 258 0 0 chr6 123398469 123398535 -65881019 - HAL1 LINE L1 -467 2040 1975 2439 104 0 0 chr6 123399051 123399358 -65880196 + AluSx SINE Alu 1 307 -5 248 310 0 0 chr6 123401196 123401254 -65878300 + L1M3c LINE L1 6 63 -6078 887 151 5 122 chr6 123401475 123401680 -65877874 - AluJb SINE Alu -10 302 122 573 55 0 0 chr6 123401791 123401864 -65877690 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 1173 251 113 12 chr6 123401866 123402357 -65877197 + L2 LINE L2 2774 3313 0 1964 106 48 27 chr6 123402362 123402654 -65876900 + AluSg SINE Alu 1 298 -12 256 246 43 0 chr6 123403294 123403363 -65876191 - LTR50 LTR ERVL -12 783 712 635 273 91 0 chr6 123403591 123403800 -65875754 - LTR50 LTR ERVL -567 228 1 639 173 0 50 chr6 123404279 123404418 -65875136 + FLAM_A SINE Alu 1 132 -1 8913 223 73 25 chr6 123404452 123407551 -65872003 + L1ME LINE L1 679 4882 -1198 2171 125 3 13 chr6 123408039 123408351 -65871203 - AluSx SINE Alu -3 309 1 207 351 0 18 chr6 123409466 123409577 -65869977 - MIR SINE MIR -74 188 80 1567 245 131 46 chr6 123409806 123410524 -65869030 - MER20B DNA MER1_type 0 783 5 2105 130 0 0 chr6 123410834 123411143 -65868411 + AluSx SINE Alu 1 309 0 274 355 92 7 chr6 123411228 123411380 -65868174 - MIR SINE MIR -78 184 20 843 235 166 57 chr6 123411498 123411992 -65867562 + MLT1H1 LTR MaLR 8 555 0 354 209 100 78 chr6 123412225 123412262 -65867292 - MER113 DNA MER1_type? -286 235 200 504 0 0 0 chr6 123412262 123412318 -65867236 + (TA)n Simple_repeat Simple_repeat 1 56 0 1855 159 3 3 chr6 123412319 123412608 -65866946 - AluSx SINE Alu -23 289 1 354 209 100 78 chr6 123412608 123412730 -65866824 - MER113 DNA MER1_type? -321 200 65 1636 200 124 34 chr6 123412730 123412770 -65866784 - MLT2B1 LTR ERVL 0 520 485 393 58 0 0 chr6 123412770 123412822 -65866732 + (TG)n Simple_repeat Simple_repeat 2 53 0 1636 200 124 34 chr6 123412822 123413256 -65866298 - MLT2B1 LTR ERVL -35 485 3 354 209 100 78 chr6 123413256 123413323 -65866231 - MER113 DNA MER1_type? -456 65 1 1484 189 19 26 chr6 123414435 123414748 -65864806 - MLT1B LTR MaLR 0 390 80 694 158 45 8 chr6 123414749 123414882 -65864672 + AluJo SINE Alu 2 139 -173 323 145 121 72 chr6 123414882 123414965 -65864589 - MLT1B LTR MaLR -303 87 1 348 125 0 0 chr6 123415773 123415821 -65863733 - AluJ/FLAM SINE Alu -236 66 19 319 371 41 39 chr6 123415893 123416339 -65863215 + L2 LINE L2 2265 2714 -600 1193 177 57 121 chr6 123416339 123416728 -65862826 - MLT1A1 LTR MaLR -1 364 1 319 371 41 39 chr6 123416728 123416771 -65862783 + L2 LINE L2 2714 2755 -559 423 162 81 9 chr6 123416859 123416970 -65862584 - Charlie7 DNA MER1_type -35 2577 2459 902 129 0 41 chr6 123417117 123417264 -65862290 + FLAM_C SINE Alu 1 141 -2 382 188 14 0 chr6 123420413 123420482 -65859072 - MER58 DNA MER1_type -1 2419 2350 255 239 57 34 chr6 123420595 123420683 -65858871 + MIR SINE MIR 124 213 -49 1795 139 25 4 chr6 123420702 123420982 -65858572 - AluJo SINE Alu -13 299 14 430 239 28 0 chr6 123421499 123421608 -65857946 + L2 LINE L2 2675 2786 -528 7452 48 5 9 chr6 123421622 123422921 -65856633 - SVA Other Other -958 1386 53 1972 149 0 7 chr6 123423022 123423323 -65856231 - AluJb SINE Alu -13 299 1 442 216 17 72 chr6 123423329 123423451 -65856103 - HAL1 LINE L1 -1469 1038 928 1917 136 28 0 chr6 123423451 123423737 -65855817 - AluJb SINE Alu -18 294 1 442 216 17 72 chr6 123423737 123423795 -65855759 - HAL1 LINE L1 -1579 928 868 991 260 206 14 chr6 123423824 123424408 -65855146 - HAL1 LINE L1 -1734 773 78 337 264 144 52 chr6 123424430 123424604 -65854950 - MIR SINE MIR -30 232 43 343 221 126 91 chr6 123425700 123425931 -65853623 + MLT1L LTR MaLR 38 276 -339 1814 138 7 24 chr6 123426140 123426311 -65853243 - AluSx SINE Alu -8 304 139 2314 79 3 35 chr6 123426311 123426627 -65852927 - AluY SINE Alu -3 308 3 1814 138 7 24 chr6 123426627 123426753 -65852801 - AluSx SINE Alu -173 139 12 198 0 0 0 chr6 123426967 123426989 -65852565 + (T)n Simple_repeat Simple_repeat 1 22 0 344 283 58 25 chr6 123427775 123427895 -65851659 - L2 LINE L2 -1 3271 3148 255 61 0 0 chr6 123428618 123428651 -65850903 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1924 52 13 0 chr6 123428651 123428884 -65850670 - L1PA8 LINE L1 -17 6155 5920 1711 147 3 32 chr6 123428990 123429275 -65850279 - AluJb SINE Alu -7 305 29 207 278 0 0 chr6 123430021 123430075 -65849479 - MIR3 SINE MIR -3 205 152 758 219 118 22 chr6 123430178 123430406 -65849148 + MIR SINE MIR 13 262 0 246 272 10 0 chr6 123430990 123431093 -65848461 + (TA)n Simple_repeat Simple_repeat 1 104 0 180 231 0 0 chr6 123431105 123431209 -65848345 + (TA)n Simple_repeat Simple_repeat 2 105 0 60 73 0 0 chr6 123431209 123431332 -65848222 + AT_rich Low_complexity Low_complexity 1 123 0 2545 39 0 0 chr6 123431332 123431615 -65847939 - AluY SINE Alu -24 287 5 424 48 32 0 chr6 123432061 123432124 -65847430 + (TTTTC)n Simple_repeat Simple_repeat 4 68 0 2188 113 36 0 chr6 123432126 123432428 -65847126 - AluSq SINE Alu 0 313 1 2489 66 10 0 chr6 123432439 123432742 -65846812 - AluY SINE Alu -5 306 1 495 0 0 0 chr6 123433883 123433938 -65845616 + (CA)n Simple_repeat Simple_repeat 2 56 0 216 97 0 0 chr6 123435879 123435910 -65843644 + (A)n Simple_repeat Simple_repeat 1 31 0 207 189 0 0 chr6 123437984 123438021 -65841533 + (CA)n Simple_repeat Simple_repeat 1 37 0 558 123 0 0 chr6 123440063 123440144 -65839410 + AluSg/x SINE Alu 215 295 -14 687 167 7 35 chr6 123440146 123440290 -65839264 + L1ME2 LINE L1 6025 6164 0 212 290 43 21 chr6 123440371 123440464 -65839090 + L3b LINE CR1 1269 1363 -220 1474 202 133 36 chr6 123440551 123440971 -65838583 + MLT1C LTR MaLR 7 467 0 243 94 0 94 chr6 123441077 123441130 -65838424 - L1MCa LINE L1 -4373 2053 2006 195 250 0 0 chr6 123441461 123441509 -65838045 - L2 LINE L2 -8 3305 3258 1869 130 32 7 chr6 123441724 123442008 -65837546 - AluJb SINE Alu -21 291 1 247 167 0 21 chr6 123442507 123442555 -65836999 - MLT1F LTR MaLR -495 47 1 684 331 164 26 chr6 123442588 123442914 -65836640 - L3 LINE CR1 -349 1228 948 2186 119 3 7 chr6 123442914 123443224 -65836330 - AluSg SINE Alu -1 309 1 684 331 164 26 chr6 123443224 123443627 -65835927 - L3 LINE CR1 -629 948 398 1925 145 0 25 chr6 123443685 123444002 -65835552 - AluJb SINE Alu -3 309 1 2221 121 0 0 chr6 123444589 123444886 -65834668 - AluSx SINE Alu -15 297 1 268 211 0 18 chr6 123445010 123445067 -65834487 + L2 LINE L2 3242 3297 -16 239 318 0 12 chr6 123445687 123445772 -65833782 + MIR SINE MIR 121 204 -58 283 244 158 16 chr6 123448642 123448769 -65830785 + MIR SINE MIR 48 192 -70 317 266 93 29 chr6 123449005 123449144 -65830410 - L2 LINE L2 -2 3270 3123 1703 252 58 7 chr6 123449984 123450433 -65829121 + REP3 LTR ERV 1 472 -90 288 286 62 9 chr6 123450612 123450724 -65828830 - MIR SINE MIR -70 138 21 21 0 0 0 chr6 123451008 123451029 -65828525 + AT_rich Low_complexity Low_complexity 1 21 0 271 280 201 7 chr6 123451548 123451837 -65827717 - LTR33A LTR ERVL -2 521 177 239 328 8 16 chr6 123452831 123452953 -65826601 - LTR33A LTR ERVL -399 124 4 1813 161 0 69 chr6 123453778 123454113 -65825441 - AluJb SINE Alu 0 312 1 458 95 16 0 chr6 123454268 123454331 -65825223 - AluJb SINE Alu -174 138 75 287 246 61 81 chr6 123454564 123454733 -65824821 - L1MC4 LINE L1 -1042 6957 6742 1943 143 3 17 chr6 123454733 123455052 -65824502 - AluJb SINE Alu 0 312 1 287 246 61 81 chr6 123455052 123455083 -65824471 - L1MC4 LINE L1 -1257 6742 6712 2435 39 0 0 chr6 123456271 123456579 -65822975 - AluY SINE Alu 0 308 1 387 0 0 0 chr6 123457212 123457255 -65822299 + (TA)n Simple_repeat Simple_repeat 1 43 0 1880 121 79 17 chr6 123457255 123457545 -65822009 - AluSx SINE Alu -4 308 1 2153 104 4 0 chr6 123458062 123458363 -65821191 + AluSg SINE Alu 1 302 0 205 182 0 0 chr6 123458562 123458595 -65820959 + (CATATA)n Simple_repeat Simple_repeat 6 38 0 1011 311 29 14 chr6 123458595 123459073 -65820481 - L1MC4 LINE L1 -2007 5801 5316 564 127 0 0 chr6 123459106 123459185 -65820369 + MADE1 DNA Mariner 1 79 -1 28 48 0 0 chr6 123459480 123459522 -65820032 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr6 123459785 123459813 -65819741 + AT_rich Low_complexity Low_complexity 1 28 0 579 180 9 9 chr6 123459934 123460045 -65819509 - LTR40b LTR ERVL -4 458 348 394 215 0 0 chr6 123460095 123460160 -65819394 - LTR40a LTR ERVL -213 306 242 274 226 106 0 chr6 123460165 123460278 -65819276 - L2 LINE L2 -218 3054 2920 297 179 116 32 chr6 123460327 123460422 -65819132 - HAL1b LINE L1 -890 458 356 1920 101 98 11 chr6 123460452 123460738 -65818816 - AluSx SINE Alu -1 311 1 650 224 50 19 chr6 123461107 123461268 -65818286 - MER104 DNA Tc2 -9 171 6 2106 135 7 0 chr6 123461862 123462166 -65817388 - AluSx SINE Alu -4 308 3 28 79 0 0 chr6 123465774 123465837 -65813717 + AT_rich Low_complexity Low_complexity 1 63 0 494 228 127 13 chr6 123467083 123467241 -65812313 - MLT1J LTR MaLR 0 511 336 1197 174 78 50 chr6 123467241 123467499 -65812055 - AluJb SINE Alu -47 265 1 899 292 46 21 chr6 123467500 123467825 -65811729 - MLT1J LTR MaLR -173 338 6 2249 101 0 23 chr6 123468222 123468528 -65811026 + AluSc SINE Alu 1 299 -10 240 171 0 0 chr6 123468809 123468850 -65810704 + MER63C DNA MER1_type 1 41 -889 * 611 264 7 0 chr6 123468848 123468992 -65810562 + MER63C DNA MER1_type 255 399 -531 829 155 0 84 chr6 123469021 123469091 -65810463 - FAM SINE Alu -178 143 91 2389 91 3 0 chr6 123469091 123469389 -65810165 - AluSx SINE Alu -13 299 1 829 155 0 84 chr6 123469389 123469473 -65810081 - FAM SINE Alu -230 91 2 1156 199 58 18 chr6 123469473 123469849 -65809705 + MER63C DNA MER1_type 384 827 -103 421 162 29 0 chr6 123469845 123469913 -65809641 - MER57A LTR ERV1 -39 364 295 * 631 95 0 42 chr6 123469951 123470046 -65809508 - AluSg/x SINE Alu -12 298 208 550 200 0 0 chr6 123470047 123470142 -65809412 + MER63C DNA MER1_type 829 923 -7 2327 119 30 25 chr6 123470423 123470785 -65808769 - THE1B LTR MaLR 0 364 1 1511 170 48 53 chr6 123471562 123471791 -65807763 - MLT1A2 LTR MaLR 0 374 146 2147 147 3 0 chr6 123471791 123472103 -65807451 + AluSq SINE Alu 1 313 0 1511 170 48 53 chr6 123472103 123472249 -65807305 - MLT1A2 LTR MaLR -228 146 1 1830 187 16 0 chr6 123472296 123472601 -65806953 + AluJo SINE Alu 1 310 -2 1972 172 90 16 chr6 123472604 123473039 -65806515 - MLT1C LTR MaLR 0 467 1 1286 278 83 53 chr6 123473039 123473742 -65805812 - L1MEd LINE L1 -4087 2223 1543 2154 133 0 0 chr6 123473742 123474035 -65805519 + AluSx SINE Alu 2 294 -18 1286 278 83 53 chr6 123474035 123475003 -65804551 - L1MEd LINE L1 -4767 1543 461 274 346 44 7 chr6 123475409 123475545 -65804009 - MIR3 SINE MIR -12 196 56 328 258 48 36 chr6 123475942 123476109 -65803445 + L2 LINE L2 2519 2687 -627 315 0 0 0 chr6 123476110 123476145 -65803409 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1033 162 6 0 chr6 123476145 123476312 -65803242 - AluJb SINE Alu -27 285 118 704 171 0 0 chr6 123476340 123476451 -65803103 - AluJb SINE Alu -179 133 23 352 312 145 18 chr6 123476484 123476595 -65802959 + L2 LINE L2 2681 2777 -536 1740 200 76 29 chr6 123476595 123477040 -65802514 - MLT1C LTR MaLR 0 467 2 352 312 145 18 chr6 123477040 123477278 -65802276 + L2 LINE L2 2777 3059 -254 514 233 0 0 chr6 123477291 123477394 -65802160 + L2 LINE L2 3208 3310 -3 306 254 220 6 chr6 123477735 123477912 -65801642 - MIR SINE MIR 0 262 48 326 194 28 0 chr6 123478692 123478764 -65800790 - L1MC3 LINE L1 -1 7784 7711 2155 132 3 0 chr6 123481183 123481494 -65798060 - AluSq SINE Alu -1 312 1 235 336 93 0 chr6 123481629 123481736 -65797818 - L2 LINE L2 -3 3269 3153 336 117 83 0 chr6 123481776 123481836 -65797718 + Tigger3(Golem) DNA MER2_type 40 104 -2925 1414 135 19 0 chr6 123481837 123482045 -65797509 + Tigger3(Golem) DNA MER2_type 2817 3028 -1 993 83 0 0 chr6 123484385 123484506 -65795048 - AluSg/x SINE Alu -45 265 145 270 338 73 7 chr6 123484964 123485100 -65794454 + L2 LINE L2 3117 3261 -11 199 250 54 0 chr6 123485147 123485203 -65794351 + MIR SINE MIR 161 219 -43 2351 106 0 0 chr6 123485414 123485715 -65793839 - AluSx SINE Alu -11 301 1 2359 196 8 13 chr6 123487481 123487951 -65791603 - L1MC3 LINE L1 -594 7191 6724 1902 148 21 3 chr6 123488567 123488858 -65790696 - AluJo SINE Alu -16 296 1 1083 248 142 9 chr6 123489556 123490007 -65789547 + L2 LINE L2 1199 1709 -1605 1164 141 21 62 chr6 123490028 123490269 -65789285 - L1MB2 LINE L1 0 6171 5941 1467 139 12 121 chr6 123490269 123490601 -65788953 - L1MB2 LINE L1 -444 5727 5432 330 294 40 24 chr6 123490606 123490732 -65788822 + L2 LINE L2 1705 1832 -1482 402 168 66 95 chr6 123490793 123490930 -65788624 + L2 LINE L2 3090 3222 -91 2469 274 82 30 chr6 123490981 123491751 -65787803 + L2 LINE L2 1913 2781 -532 2254 82 11 0 chr6 123491751 123492111 -65787443 + AluSq SINE Alu 1 363 0 2469 274 82 30 chr6 123492111 123492673 -65786881 + L2 LINE L2 2781 3313 0 489 159 153 6 chr6 123492817 123492950 -65786604 + MER5A DNA MER1_type 4 159 -30 444 291 43 0 chr6 123492982 123493099 -65786455 - MER5B DNA MER1_type 0 178 57 273 119 0 0 chr6 123494532 123494574 -65784980 + (CA)n Simple_repeat Simple_repeat 1 42 0 308 318 58 84 chr6 123494743 123495051 -65784503 + L2 LINE L2 2930 3229 -43 240 323 81 0 chr6 123495126 123495250 -65784304 + MIR SINE MIR 48 181 -81 325 141 14 28 chr6 123495488 123495559 -65783995 + Charlie7 DNA MER1_type 2434 2503 -109 * 358 253 0 0 chr6 123495550 123495637 -65783917 - LTR37B LTR ERV1 -377 91 5 204 120 40 20 chr6 123496046 123496096 -65783458 + (TTATA)n Simple_repeat Simple_repeat 5 55 0 348 219 42 42 chr6 123496128 123496247 -65783307 + Charlie7 DNA MER1_type 2494 2612 0 245 201 88 11 chr6 123497205 123497344 -65782210 + L2 LINE L2 2458 2566 -748 730 272 22 13 chr6 123497344 123497568 -65781986 + L2 LINE L2 2678 2903 -411 316 0 0 0 chr6 123498051 123498086 -65781468 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1563 144 32 14 chr6 123498086 123498364 -65781190 - AluJb SINE Alu -1 317 1 202 156 0 22 chr6 123498372 123498417 -65781137 + L2 LINE L2 3099 3142 -171 1658 137 62 3 chr6 123498534 123498826 -65780728 + L1MD3 LINE L1 7507 7815 -180 209 281 18 0 chr6 123500003 123500060 -65779494 - L2 LINE L2 -6 3266 3209 316 246 61 18 chr6 123500417 123500531 -65779023 + MIR3 SINE MIR 83 201 -7 7535 182 40 11 chr6 123500863 123502984 -65776570 - L1M1 LINE L1 -4065 1263 3 395 321 80 38 chr6 123504601 123504838 -65774716 + L3 LINE CR1 1118 1364 -213 226 298 105 53 chr6 123505064 123505235 -65774319 + L3 LINE CR1 1374 1553 -24 1786 117 4 0 chr6 123505448 123505704 -65773850 - AluSx SINE Alu -20 292 36 358 243 252 0 chr6 123506038 123506141 -65773413 - MER5A DNA MER1_type 0 189 61 22 0 0 0 chr6 123506141 123506163 -65773391 + AT_rich Low_complexity Low_complexity 1 22 0 857 210 38 5 chr6 123506174 123506360 -65773194 - L1PB4 LINE L1 -1 6155 5964 250 208 21 0 chr6 123506362 123506410 -65773144 - MER5A DNA MER1_type -113 76 28 202 324 19 56 chr6 123507529 123507637 -65771917 - MIR SINE MIR -86 122 19 817 186 22 22 chr6 123508120 123508262 -65771292 + L1MB3 LINE L1 6001 6145 -38 2026 137 0 0 chr6 123508262 123508561 -65770993 - AluSx SINE Alu -13 299 1 817 186 22 22 chr6 123508561 123508601 -65770953 + L1MB3 LINE L1 6144 6183 0 1907 145 0 0 chr6 123508902 123509230 -65770324 + AluSx SINE Alu 1 312 0 751 252 235 13 chr6 123510826 123511128 -65768426 - MLT1F1 LTR MaLR -5 562 194 373 316 90 19 chr6 123514071 123514226 -65765328 + L3b LINE CR1 1330 1495 -88 264 266 0 32 chr6 123514294 123514388 -65765166 + MER113 DNA MER1_type? 30 120 -401 1629 200 84 25 chr6 123514504 123514945 -65764609 + MLT1C LTR MaLR 1 467 0 2136 106 6 6 chr6 123515435 123515747 -65763807 - AluSq SINE Alu -1 312 1 250 322 0 0 chr6 123516084 123516143 -65763411 - L2 LINE L2 -5 3308 3250 8451 192 43 60 chr6 123516640 123517515 -65762039 - L1MB7 LINE L1 -1 6183 5294 2473 59 3 0 chr6 123517515 123517821 -65761733 - AluY SINE Alu -4 307 1 8451 192 43 60 chr6 123517821 123517978 -65761576 - L1MB7 LINE L1 -890 5294 5136 2053 109 17 0 chr6 123517978 123518271 -65761283 - AluSx SINE Alu -12 300 3 8451 192 43 60 chr6 123518271 123518750 -65760804 - L1MB7 LINE L1 -1048 5136 4650 2052 188 17 0 chr6 123518750 123519166 -65760388 - L1MA4 LINE L1 -19 6281 5859 8451 192 43 60 chr6 123519166 123520544 -65759010 - L1MB7 LINE L1 -1534 4650 3362 2182 157 8 3 chr6 123520544 123520908 -65758646 + MER47A DNA MER2_type 1 366 0 8451 192 43 60 chr6 123520908 123521294 -65758260 - L1MB7 LINE L1 -2822 3362 2971 319 180 22 67 chr6 123521504 123521593 -65757961 - L1MCa LINE L1 -5002 1424 1340 1868 85 48 29 chr6 123521818 123522090 -65757464 + AluSx SINE Alu 23 299 -13 1683 93 0 4 chr6 123522565 123522791 -65756763 - AluSq SINE Alu -88 225 1 651 299 110 4 chr6 123523694 123523948 -65755606 - MLT1J2 LTR MaLR -147 303 23 965 198 65 32 chr6 123524200 123524448 -65755106 + MIR SINE MIR 5 260 -2 245 306 16 0 chr6 123525040 123525102 -65754452 + L2 LINE L2 3234 3296 -17 2255 128 43 6 chr6 123525593 123525944 -65753610 - THE1B LTR MaLR 0 364 1 2199 111 0 0 chr6 123526225 123526531 -65753023 + AluSx SINE Alu 1 306 -6 1764 69 100 72 chr6 123526765 123527055 -65752499 - AluY SINE Alu -13 298 1 678 218 65 12 chr6 123527134 123527352 -65752202 - MLT1J LTR MaLR -215 231 43 2160 116 0 0 chr6 123528798 123529099 -65750455 + AluSx SINE Alu 1 301 -11 223 250 54 0 chr6 123529310 123529366 -65750188 - MIR SINE MIR -43 219 161 279 299 82 73 chr6 123529413 123529767 -65749787 - L2 LINE L2 -11 3302 2946 186 267 30 50 chr6 123529750 123529851 -65749703 - MIR SINE MIR -90 118 20 * 937 83 0 0 chr6 123530007 123530128 -65749426 + AluSg/x SINE Alu 147 267 -45 216 246 366 35 chr6 123530668 123530810 -65748744 - MIR3 SINE MIR -11 197 9 1397 139 19 0 chr6 123532469 123532677 -65746877 - Tigger3(Golem) DNA MER2_type 0 3029 2818 339 117 83 0 chr6 123532678 123532738 -65746816 - Tigger3(Golem) DNA MER2_type -2925 104 40 261 350 113 0 chr6 123532778 123532875 -65746679 + L2 LINE L2 3153 3260 -12 455 143 60 12 chr6 123532968 123533052 -65746502 + AluY SINE Alu 209 296 -15 210 268 54 0 chr6 123533261 123533317 -65746237 - MIR SINE MIR -43 219 161 1785 107 0 0 chr6 123533337 123533579 -65745975 - AluSx SINE Alu -70 242 1 2031 132 3 0 chr6 123534063 123534374 -65745180 + AluSq SINE Alu 1 312 -1 180 306 0 0 chr6 123536572 123536621 -65742933 + MIR SINE MIR 179 227 -35 1621 108 119 25 chr6 123536741 123537018 -65742536 - AluSg SINE Alu -6 304 2 1277 214 39 92 chr6 123537020 123537553 -65742001 - MLT1D LTR MaLR 0 505 1 445 278 80 0 chr6 123540336 123540487 -65739067 - MER91A DNA MER1_type -33 163 1 4412 76 7 0 chr6 123540741 123541291 -65738263 - MER41A LTR ERV1 0 554 1 354 23 0 0 chr6 123542422 123542465 -65737089 + (TG)n Simple_repeat Simple_repeat 2 44 0 31 44 0 0 chr6 123543006 123543051 -65736503 + AT_rich Low_complexity Low_complexity 1 45 0 346 203 51 59 chr6 123544630 123544748 -65734806 - MARNA DNA Mariner -197 389 273 265 49 24 24 chr6 123544906 123544947 -65734607 - MARNA DNA Mariner -484 102 62 257 250 62 50 chr6 123545047 123545127 -65734427 - L3 LINE CR1 -2 1575 1495 263 318 35 0 chr6 123545194 123545279 -65734275 + MIR3 SINE MIR 97 184 -24 1906 160 0 0 chr6 123548869 123549176 -65730378 - AluJb SINE Alu -5 307 1 204 286 57 50 chr6 123549319 123549352 -65730202 + MIR SINE MIR 85 116 -146 2525 155 47 0 chr6 123549352 123549759 -65729795 + MSTB LTR MaLR 1 426 0 204 286 57 50 chr6 123549759 123549865 -65729689 + MIR SINE MIR 116 225 -37 2226 100 0 6 chr6 123550631 123550942 -65728612 + AluSc SINE Alu 1 309 0 341 268 134 73 chr6 123551110 123551289 -65728265 + MIR3 SINE MIR 18 207 -1 274 220 17 0 chr6 123554628 123554687 -65724867 + MIR3 SINE MIR 99 158 -50 204 135 0 0 chr6 123554936 123554973 -65724581 + (CAT)n Simple_repeat Simple_repeat 2 38 0 2225 103 0 0 chr6 123555037 123555339 -65724215 + AluSg SINE Alu 1 302 -8 2367 55 0 0 chr6 123555648 123555938 -65723616 + AluY SINE Alu 1 290 -21 401 298 79 28 chr6 123556092 123556270 -65723284 + MIR SINE MIR 19 205 -57 2718 84 5 24 chr6 123556437 123556808 -65722746 + THE1B LTR MaLR 1 364 0 705 263 52 19 chr6 123557185 123557384 -65722170 + MIR SINE MIR 8 204 -4 403 222 46 37 chr6 123557410 123557518 -65722036 - MLT1J2 LTR MaLR 0 450 342 455 269 145 16 chr6 123557562 123557748 -65721806 - MLT1J1 LTR MaLR -235 211 2 837 331 67 40 chr6 123558632 123559279 -65720275 - HERV16 LTR ERVL -3970 1026 363 721 253 16 39 chr6 123559425 123559607 -65719947 - MER5B DNA MER1_type 0 178 1 2152 117 0 0 chr6 123559957 123560255 -65719299 + AluSx SINE Alu 1 298 -14 1259 198 78 103 chr6 123560557 123561118 -65718436 - MLT1H LTR MaLR 0 549 3 475 318 98 14 chr6 123561294 123561653 -65717901 + L1ME4a LINE L1 5559 5947 -217 1241 180 4 17 chr6 123561717 123561956 -65717598 + AluJo SINE Alu 67 302 -10 1073 152 132 10 chr6 123561971 123562175 -65717379 + MLT2B1 LTR ERVL 1 229 -291 258 164 73 0 chr6 123562185 123562240 -65717314 + MLT2B1 LTR ERVL 462 520 0 25 65 0 0 chr6 123562435 123562481 -65717073 + AT_rich Low_complexity Low_complexity 1 46 0 331 214 19 29 chr6 123562549 123562652 -65716902 + L1ME4a LINE L1 5962 6063 -58 2054 128 3 0 chr6 123562718 123563022 -65716532 + AluSx SINE Alu 1 305 -7 640 266 146 95 chr6 123563726 123564240 -65715314 - MLT1K LTR MaLR -39 549 10 318 240 23 4 chr6 123564630 123564734 -65714820 + L1M4 LINE L1 3670 3773 -2373 364 261 115 25 chr6 123564870 123565027 -65714527 + L1M4 LINE L1 3888 4058 -2088 5422 201 43 37 chr6 123565038 123565743 -65713811 + L1MC3 LINE L1 6426 7144 -641 2488 94 41 8 chr6 123565743 123566105 -65713449 + THE1C LTR MaLR 2 375 0 5422 201 43 37 chr6 123566105 123566751 -65712803 + L1MC3 LINE L1 7144 7785 0 440 242 110 9 chr6 123566799 123566941 -65712613 + L1M4 LINE L1 4137 4293 -1853 315 0 0 0 chr6 123566947 123566982 -65712572 + (CA)n Simple_repeat Simple_repeat 2 36 0 471 278 42 21 chr6 123566984 123567268 -65712286 + L1M4 LINE L1 4328 4617 -1529 25 0 0 0 chr6 123569226 123569251 -65710303 + AT_rich Low_complexity Low_complexity 1 25 0 1742 159 4 0 chr6 123569251 123569527 -65710027 - AluSx SINE Alu -25 287 11 325 282 205 13 chr6 123569778 123569934 -65709620 + MER5A DNA MER1_type 3 188 -1 276 340 156 52 chr6 123569951 123570123 -65709431 - L2 LINE L2 -16 3256 3103 1752 175 93 28 chr6 123570123 123570522 -65709032 + MSTC LTR MaLR 1 425 -3 276 340 156 52 chr6 123570522 123570637 -65708917 - L2 LINE L2 -169 3103 2939 200 286 0 18 chr6 123570985 123571041 -65708513 + CT-rich Low_complexity Low_complexity 2 56 0 4143 193 48 11 chr6 123571282 123572177 -65707377 - MER63C DNA MER1_type -1 929 2 476 289 35 40 chr6 123572256 123572457 -65707097 + MIR3 SINE MIR 5 204 -4 2019 124 0 10 chr6 123573462 123573761 -65705793 - AluSx SINE Alu -16 296 1 976 156 0 13 chr6 123573776 123573930 -65705624 + FRAM SINE Alu 1 146 -30 274 276 52 8 chr6 123574265 123574399 -65705155 - LTR33A LTR ERVL -2 521 382 254 228 0 0 chr6 123574542 123574599 -65704955 - LTR33A LTR ERVL -465 58 2 247 344 38 23 chr6 123574620 123574751 -65704803 - MIR SINE MIR -71 191 59 195 170 0 0 chr6 123577255 123577302 -65702252 + CT-rich Low_complexity Low_complexity 1 47 0 506 179 45 27 chr6 123579273 123579385 -65700169 + MIR SINE MIR 113 226 -36 580 284 90 19 chr6 123579613 123579824 -65699730 + MIR SINE MIR 18 243 -19 564 312 11 27 chr6 123580420 123580606 -65698948 + MIR SINE MIR 63 245 -17 256 313 10 21 chr6 123581236 123581332 -65698222 - L2 LINE L2 -174 3098 3004 572 226 51 40 chr6 123582561 123582738 -65696816 + MIR SINE MIR 33 211 -51 316 375 0 0 chr6 123583269 123583357 -65696197 + MIR3 SINE MIR 73 160 -48 306 195 0 0 chr6 123584526 123584603 -65694951 + T-rich Low_complexity Low_complexity 1 77 0 980 146 13 0 chr6 123586218 123586376 -65693178 - AluSg/x SINE Alu -16 294 135 301 312 18 0 chr6 123586933 123587042 -65692512 + L2 LINE L2 3200 3310 -3 360 243 25 13 chr6 123587216 123587325 -65692229 - MIR3 SINE MIR -3 205 95 736 10 21 10 chr6 123587699 123587796 -65691758 + (TTTC)n Simple_repeat Simple_repeat 4 101 0 221 235 59 0 chr6 123589007 123589058 -65690496 + MIR SINE MIR 44 97 -111 16290 113 19 21 chr6 123591001 123592789 -65686765 - Tigger1 DNA MER2_type -5 2413 629 1743 165 13 13 chr6 123592789 123593092 -65686462 - AluJo SINE Alu -9 303 1 16290 113 19 21 chr6 123593092 123593720 -65685834 - Tigger1 DNA MER2_type -1789 629 1 197 33 33 0 chr6 123593893 123593923 -65685631 + (TAAAAA)n Simple_repeat Simple_repeat 1 31 0 219 139 0 0 chr6 123594369 123594405 -65685149 + (T)n Simple_repeat Simple_repeat 1 36 0 1788 118 28 38 chr6 123594580 123594869 -65684685 - AluJo SINE Alu -14 298 13 1305 120 195 45 chr6 123594882 123595149 -65684405 - AluJo SINE Alu -3 309 3 214 325 32 24 chr6 123595163 123595286 -65684268 - MIR SINE MIR -14 248 125 216 222 28 42 chr6 123595444 123595516 -65684038 - MIR3 SINE MIR -17 191 121 204 265 255 0 chr6 123596349 123596447 -65683107 + MIR3 SINE MIR 43 165 -43 786 222 145 9 chr6 123596691 123596912 -65682642 + MIR SINE MIR 11 261 -1 488 261 36 14 chr6 123596895 123597033 -65682521 - MIR SINE MIR -101 161 21 * 350 281 44 30 chr6 123597141 123597276 -65682278 - MIR SINE MIR -124 138 2 303 298 48 48 chr6 123598358 123598482 -65681072 - L2 LINE L2 -1 3271 3148 206 239 22 0 chr6 123598595 123598641 -65680913 + CT-rich Low_complexity Low_complexity 1 47 0 201 74 0 0 chr6 123598897 123598924 -65680630 + (CA)n Simple_repeat Simple_repeat 1 27 0 2102 123 0 7 chr6 123599747 123600049 -65679505 - AluSx SINE Alu -8 304 5 26 30 0 0 chr6 123600147 123600180 -65679374 + AT_rich Low_complexity Low_complexity 1 33 0 2180 126 0 13 chr6 123600354 123600664 -65678890 + AluSc SINE Alu 1 306 -3 415 202 24 0 chr6 123603186 123603270 -65676284 - MER96 DNA MER1_type? -89 86 1 2123 122 7 0 chr6 123604870 123605157 -65674397 + AluSx SINE Alu 1 289 -23 188 35 35 0 chr6 123605161 123605190 -65674364 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 21 71 0 0 chr6 123605262 123605304 -65674250 + AT_rich Low_complexity Low_complexity 1 42 0 2216 100 0 3 chr6 123605561 123605877 -65673677 + AluSx SINE Alu 1 315 0 521 223 61 40 chr6 123607073 123607221 -65672333 + MIR SINE MIR 11 161 -101 190 320 156 8 chr6 123607544 123607672 -65671882 + MIR SINE MIR 46 192 -70 222 239 47 4 chr6 123608326 123608420 -65671134 + MIR SINE MIR 52 150 -63 189 0 0 0 chr6 123608976 123608997 -65670557 + (CGG)n Simple_repeat Simple_repeat 2 22 0 41 48 0 0 chr6 123609071 123609133 -65670421 + GC_rich Low_complexity Low_complexity 1 62 0 38 22 0 0 chr6 123609313 123609358 -65670196 + GC_rich Low_complexity Low_complexity 1 45 0 27 29 0 0 chr6 123612981 123613015 -65666539 + AT_rich Low_complexity Low_complexity 1 34 0 318 26 0 0 chr6 123613288 123613327 -65666227 + (GA)n Simple_repeat Simple_repeat 1 39 0 198 0 0 0 chr6 123613326 123613348 -65666206 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 189 0 0 0 chr6 123614820 123614841 -65664713 + (A)n Simple_repeat Simple_repeat 1 21 0 284 342 103 0 chr6 123615336 123615453 -65664101 + MIR SINE MIR 25 153 -109 202 218 55 0 chr6 123617177 123617232 -65662322 + MIR SINE MIR 93 150 -112 264 273 101 30 chr6 123617434 123617533 -65662021 - L2 LINE L2 -1 3312 3207 182 240 164 19 chr6 123617649 123617753 -65661801 - L2 LINE L2 -1 3271 3153 350 281 25 41 chr6 123618998 123619119 -65660435 - MIR SINE MIR -133 129 11 805 276 106 75 chr6 123619469 123619933 -65659621 - L3 LINE CR1 -156 1421 944 23 0 0 0 chr6 123619941 123619964 -65659590 + AT_rich Low_complexity Low_complexity 1 23 0 330 317 100 21 chr6 123620004 123620244 -65659310 - MIR SINE MIR -2 260 2 201 308 42 42 chr6 123620280 123620400 -65659154 - L3 LINE CR1 -1273 304 185 464 304 7 7 chr6 123624574 123624722 -65654832 - MER103 DNA DNA -2 164 17 2301 104 7 3 chr6 123625944 123626252 -65653302 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr6 123627966 123627988 -65651566 + GC_rich Low_complexity Low_complexity 1 22 0 1426 148 0 29 chr6 123628016 123628259 -65651295 - AluJo SINE Alu -1 311 76 496 336 94 14 chr6 123629354 123629705 -65649849 - L3 LINE CR1 -37 1540 1162 1452 143 14 0 chr6 123629733 123629950 -65649604 - AluJo SINE Alu -89 223 4 297 301 36 0 chr6 123630302 123630385 -65649169 + MIR SINE MIR 30 115 -147 831 130 50 105 chr6 123630941 123631006 -65648548 - MER5A DNA MER1_type 0 189 122 2285 169 63 15 chr6 123631006 123631484 -65648070 + L1MB4 LINE L1 5680 6180 0 831 130 50 105 chr6 123631484 123631618 -65647936 - MER5A DNA MER1_type -67 122 1 345 47 0 0 chr6 123633239 123633282 -65646272 + (TG)n Simple_repeat Simple_repeat 1 43 0 234 276 148 18 chr6 123633433 123633547 -65646007 - MER5B DNA MER1_type -8 181 59 379 232 32 11 chr6 123634728 123634823 -65644731 + Charlie7 DNA MER1_type 3 99 -2513 365 170 67 52 chr6 123634830 123634965 -65644589 + Charlie7 DNA MER1_type 2459 2595 -17 2496 92 0 0 chr6 123637696 123638002 -65641552 + AluSx SINE Alu 1 306 -6 356 289 168 0 chr6 123638159 123638308 -65641246 - MER5A DNA MER1_type -7 182 9 200 326 8 31 chr6 123639444 123639573 -65639981 + G-rich Low_complexity Low_complexity 1 126 0 221 245 0 20 chr6 123641454 123641503 -65638051 + CT-rich Low_complexity Low_complexity 3 50 0 36 77 0 0 chr6 123643072 123643150 -65636404 + AT_rich Low_complexity Low_complexity 1 78 0 218 260 0 0 chr6 123643220 123643270 -65636284 + L2 LINE L2 3264 3313 0 377 274 103 0 chr6 123644777 123644894 -65634660 - MIR SINE MIR -14 248 120 2017 147 3 0 chr6 123698941 123699240 -65580314 - AluJo SINE Alu -12 300 1 225 0 0 0 chr6 123701140 123701165 -65578389 + (CA)n Simple_repeat Simple_repeat 2 26 0 258 105 0 0 chr6 123703445 123703483 -65576071 + (TC)n Simple_repeat Simple_repeat 2 39 0 216 0 0 0 chr6 123703483 123703507 -65576047 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr6 123703592 123703613 -65575941 + AT_rich Low_complexity Low_complexity 1 21 0 343 226 98 0 chr6 123704257 123704359 -65575195 - MER113 DNA MER1_type? -409 112 1 401 0 20 0 chr6 123704488 123704537 -65575017 + (TG)n Simple_repeat Simple_repeat 1 50 0 29 0 0 0 chr6 123705142 123705171 -65574383 + AT_rich Low_complexity Low_complexity 1 29 0 219 296 49 0 chr6 123707040 123707121 -65572433 + L3b LINE CR1 1406 1490 -93 552 276 22 32 chr6 123707778 123707963 -65571591 - MIR SINE MIR -71 191 9 2153 115 3 16 chr6 123710527 123710831 -65568723 + AluSq SINE Alu 1 300 -13 194 264 118 64 chr6 123710937 123711047 -65568507 + L2 LINE L2 3198 3313 0 378 259 70 28 chr6 123711730 123711873 -65567681 + MER103 DNA DNA 3 151 -15 214 279 0 63 chr6 123712825 123712904 -65566650 - L2 LINE L2 -39 3233 3160 1853 167 0 7 chr6 123713935 123714241 -65565313 + AluJb SINE Alu 1 304 -8 313 180 33 16 chr6 123714262 123714323 -65565231 - L2 LINE L2 0 3313 3252 328 330 131 38 chr6 123714597 123714818 -65564736 + L2 LINE L2 2882 3138 -134 459 0 0 0 chr6 123714818 123714869 -65564685 + (TG)n Simple_repeat Simple_repeat 2 52 0 328 330 131 38 chr6 123714869 123714938 -65564616 + L2 LINE L2 3138 3199 -73 596 226 15 8 chr6 123715044 123715177 -65564377 + L1ME LINE L1 5624 5757 -405 1218 164 48 5 chr6 123715632 123715839 -65563715 + MER20 DNA MER1_type 1 216 -3 564 263 51 13 chr6 123716322 123716478 -65563076 + MIR3 SINE MIR 40 201 -7 470 318 46 25 chr6 123716859 123717098 -65562456 - LTR16C LTR ERVL -10 481 238 1218 164 48 5 chr6 123717406 123717613 -65561941 - MER20 DNA MER1_type -3 216 1 1774 235 31 59 chr6 123718139 123718743 -65560811 - L1ME LINE L1 -411 5759 5175 493 305 0 0 chr6 123718744 123718872 -65560682 - L1PB4 LINE L1 0 6156 6029 2817 276 62 53 chr6 123718881 123719169 -65560385 - L1ME LINE L1 -966 5180 4896 1999 191 13 34 chr6 123719169 123719547 -65560007 + MLT1A2 LTR MaLR 1 370 -4 2817 276 62 53 chr6 123719547 123720274 -65559280 - L1ME LINE L1 -1250 4896 4177 1748 179 0 49 chr6 123720274 123720599 -65558955 - AluSx SINE Alu -3 309 1 2817 276 62 53 chr6 123720599 123721009 -65558545 - L1ME LINE L1 -1969 4177 3733 2034 146 7 0 chr6 123721009 123721310 -65558244 - AluSx SINE Alu -7 305 3 2817 276 62 53 chr6 123721310 123721625 -65557929 - L1ME LINE L1 -2413 3733 3422 604 243 41 31 chr6 123722022 123722190 -65557364 - MIR3 SINE MIR -32 176 7 829 250 33 0 chr6 123722694 123722874 -65556680 + MIR SINE MIR 6 191 -71 192 77 0 0 chr6 123723028 123723054 -65556500 + (T)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr6 123723109 123723138 -65556416 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr6 123724024 123724050 -65555504 + AT_rich Low_complexity Low_complexity 1 26 0 398 302 76 41 chr6 123725588 123725760 -65553794 + MIR SINE MIR 30 206 -56 1241 185 28 0 chr6 123726503 123726714 -65552840 + MER58A DNA MER1_type 8 224 0 778 246 30 55 chr6 123727315 123727353 -65552201 - MIR SINE MIR -30 232 195 2554 64 3 3 chr6 123727353 123727666 -65551888 - AluSp SINE Alu 0 313 1 778 246 30 55 chr6 123727666 123727863 -65551691 - MIR SINE MIR -67 195 3 2264 85 0 0 chr6 123728182 123728465 -65551089 - AluSx SINE Alu -12 300 18 1115 65 33 87 chr6 123729052 123729173 -65550381 + MER30 DNA MER1_type 1 110 -120 2285 101 0 0 chr6 123729173 123729470 -65550084 + AluSq SINE Alu 1 297 -16 1115 65 33 87 chr6 123729470 123729532 -65550022 + MER30 DNA MER1_type 110 174 -56 2137 80 0 35 chr6 123729698 123729985 -65549569 - AluSq SINE Alu -16 297 21 2160 116 0 0 chr6 123730828 123731148 -65548406 + AluSx SINE Alu 1 320 0 2182 126 3 3 chr6 123731156 123731465 -65548089 + AluSx SINE Alu 1 309 -3 26 30 0 0 chr6 123731674 123731707 -65547847 + AT_rich Low_complexity Low_complexity 1 33 0 2059 128 3 0 chr6 123733719 123734007 -65545547 + AluSx SINE Alu 1 289 -23 28 0 0 26 chr6 123735936 123735954 -65543600 + AT_rich Low_complexity Low_complexity 1 18 -20 2467 54 0 14 chr6 123735954 123736251 -65543303 + AluY SINE Alu 1 293 -18 28 0 0 26 chr6 123736251 123736271 -65543283 + AT_rich Low_complexity Low_complexity 18 38 0 1897 142 41 0 chr6 123736371 123736666 -65542888 - AluSx SINE Alu -2 310 4 198 250 29 15 chr6 123737365 123737433 -65542121 - MIR SINE MIR -40 222 154 226 271 167 21 chr6 123738606 123738702 -65540852 + L2 LINE L2 3195 3304 -9 1114 253 155 30 chr6 123738800 123739334 -65540220 + L1ME4a LINE L1 5519 6119 -2 249 238 0 0 chr6 123746210 123746290 -65533264 + (TGG)n Simple_repeat Simple_repeat 2 81 0 531 182 0 0 chr6 123746403 123746524 -65533030 + (CCG)n Simple_repeat Simple_repeat 1 121 0 285 274 9 19 chr6 123746689 123746795 -65532759 + G-rich Low_complexity Low_complexity 1 105 0 30 89 0 0 chr6 123746886 123746965 -65532589 + GC_rich Low_complexity Low_complexity 1 79 0 21 0 0 0 chr6 123747303 123747324 -65532230 + GC_rich Low_complexity Low_complexity 1 21 0 469 252 68 44 chr6 123750144 123750279 -65529275 - MIR SINE MIR -42 220 77 2165 123 0 3 chr6 123750279 123750580 -65528974 + AluSx SINE Alu 1 300 -12 469 252 68 44 chr6 123750580 123750650 -65528904 - MIR SINE MIR -185 77 10 472 231 67 8 chr6 123750681 123750815 -65528739 + MER104 DNA Tc2 1 142 -38 2224 100 7 3 chr6 123750816 123751125 -65528429 - AluY SINE Alu 0 311 2 457 310 15 26 chr6 123751324 123751532 -65528022 - MLT1I LTR MaLR -201 208 1 42 0 0 0 chr6 123751577 123751619 -65527935 + AT_rich Low_complexity Low_complexity 1 42 0 930 319 116 18 chr6 123751919 123752427 -65527127 - L2 LINE L2 0 3313 2761 1996 142 3 10 chr6 123752664 123752974 -65526580 + AluSx SINE Alu 1 308 -4 1386 104 15 161 chr6 123753651 123753717 -65525837 - MER89 LTR ERV1 0 559 485 1890 28 5 0 chr6 123753717 123753928 -65525626 - L1PA3 LINE L1 -3 6152 5941 1386 104 15 161 chr6 123753928 123754197 -65525357 - MER89 LTR ERV1 -74 485 273 288 213 80 13 chr6 123754237 123754312 -65525242 - MER89 LTR ERV1 -294 265 186 389 153 97 0 chr6 123754320 123754392 -65525162 - MER89 LTR ERV1 -480 79 1 1824 140 0 39 chr6 123754614 123754921 -65524633 + AluJo SINE Alu 18 312 0 2336 86 3 7 chr6 123754968 123755272 -65524282 - AluY SINE Alu -8 303 1 534 115 0 0 chr6 123755374 123755452 -65524102 - MER41B LTR ERV1 -87 548 471 21 0 0 0 chr6 123756360 123756381 -65523173 + AT_rich Low_complexity Low_complexity 1 21 0 256 264 88 11 chr6 123756735 123756826 -65522728 - MIR SINE MIR -48 214 117 726 276 81 20 chr6 123757806 123758052 -65521502 - MIR SINE MIR 0 262 2 277 229 16 0 chr6 123758055 123758116 -65521438 - LTR67 LTR ERVL -1 556 495 240 143 0 0 chr6 123758278 123758320 -65521234 + (GAAAA)n Simple_repeat Simple_repeat 1 42 0 274 344 90 36 chr6 123758333 123758648 -65520906 + L2 LINE L2 2763 3090 -182 1774 172 6 16 chr6 123758655 123758969 -65520585 - AluJb SINE Alu -1 311 1 587 210 0 0 chr6 123759081 123759181 -65520373 + FRAM SINE Alu 31 130 -46 1899 176 0 0 chr6 123759291 123759586 -65519968 - AluJb SINE Alu -17 295 1 844 172 0 0 chr6 123760324 123760452 -65519102 - FRAM SINE Alu -18 158 31 1850 169 6 13 chr6 123760557 123760870 -65518684 + AluJb SINE Alu 1 311 -1 285 365 74 36 chr6 123760877 123761209 -65518345 - L2 LINE L2 -182 3090 2735 1997 156 0 0 chr6 123761209 123761504 -65518050 - AluJb SINE Alu -17 295 1 285 365 74 36 chr6 123761504 123761684 -65517870 - L2 LINE L2 -537 2735 2563 271 194 0 104 chr6 123761809 123761876 -65517678 + AluJb SINE Alu 114 173 -129 * 371 221 0 0 chr6 123761870 123761938 -65517616 - HsTC2 DNA Tc2 -1830 68 1 291 277 21 0 chr6 123762656 123762750 -65516804 - MIR SINE MIR 0 262 167 372 194 39 139 chr6 123762750 123762879 -65516675 - MLT1H LTR MaLR 0 549 434 354 280 30 65 chr6 123762943 123763111 -65516443 - MLT1H LTR MaLR -241 308 147 543 261 43 43 chr6 123763194 123763355 -65516199 - MIR SINE MIR -95 167 7 477 225 194 49 chr6 123764309 123764413 -65515141 + L1MC5 LINE L1 7555 7642 -319 1993 120 4 0 chr6 123764413 123764689 -65514865 - AluSx SINE Alu -19 293 17 477 225 194 49 chr6 123764689 123764913 -65514641 + L1MC5 LINE L1 7642 7931 -30 1368 118 0 10 chr6 123765095 123765290 -65514264 - AluSg/x SINE Alu -11 299 107 1112 47 0 0 chr6 123765552 123765679 -65513875 + AluY SINE Alu 1 127 -184 589 289 91 5 chr6 123765773 123765960 -65513594 - MIR SINE MIR -25 237 35 2436 83 3 6 chr6 123766515 123766828 -65512726 - AluSp SINE Alu -1 312 1 209 238 12 25 chr6 123767415 123767495 -65512059 + GA-rich Low_complexity Low_complexity 4 82 0 371 208 125 10 chr6 123767522 123767618 -65511936 + MER5B DNA MER1_type 2 108 -70 291 267 0 44 chr6 123767815 123767905 -65511649 - L2 LINE L2 0 3313 3228 279 0 0 0 chr6 123767941 123767972 -65511582 + (TG)n Simple_repeat Simple_repeat 2 32 0 800 154 16 0 chr6 123767977 123768100 -65511454 - AluJb SINE Alu -187 125 1 315 343 89 0 chr6 123768217 123768363 -65511191 - MIR3 SINE MIR -3 205 47 941 276 163 29 chr6 123768808 123769303 -65510251 + L1ME3 LINE L1 5381 5939 -231 25 51 0 0 chr6 123769317 123769356 -65510198 + AT_rich Low_complexity Low_complexity 1 39 0 864 279 73 52 chr6 123769609 123770235 -65509319 - L1MC5 LINE L1 -159 7802 7246 505 183 14 56 chr6 123770253 123770395 -65509159 - L1MC5 LINE L1 -743 7218 7083 459 231 65 47 chr6 123770727 123770896 -65508658 + LTR16C LTR ERVL 320 491 0 758 240 119 71 chr6 123770901 123771255 -65508299 - L1MC4 LINE L1 -881 7080 6710 1080 98 0 0 chr6 123771270 123771402 -65508152 + AluSx SINE Alu 1 132 -181 8151 21 5 1 chr6 123771402 123772424 -65507130 + L1PA4 LINE L1 5128 6152 -3 22 0 0 0 chr6 123772424 123772446 -65507108 + AT_rich Low_complexity Low_complexity 1 22 0 299 159 71 35 chr6 123772561 123772674 -65506880 - Charlie4 DNA MER1_type -56 1905 1789 300 37 56 0 chr6 123772675 123772729 -65506825 + (TA)n Simple_repeat Simple_repeat 2 58 0 1156 156 0 0 chr6 123772729 123772902 -65506652 + AluSx SINE Alu 130 302 -8 291 298 12 12 chr6 123772904 123772988 -65506566 - L1MC4a LINE L1 -1118 6690 6613 439 272 128 43 chr6 123773201 123773506 -65506048 - L1MC4a LINE L1 -1426 6382 6052 1617 220 96 23 chr6 123773538 123773975 -65505579 - L1MC4a LINE L1 -1877 5931 5463 1050 175 9 52 chr6 123774525 123774736 -65504818 + MER20 DNA MER1_type 18 219 0 2212 110 3 0 chr6 123775733 123776032 -65503522 + AluSx SINE Alu 11 310 -2 655 260 87 6 chr6 123776291 123776464 -65503090 + MIR SINE MIR 16 202 -60 373 20 0 0 chr6 123778357 123778406 -65501148 - AluY SINE Alu 0 308 260 1492 39 0 22 chr6 123778408 123778586 -65500968 - AluY SINE Alu -137 174 1 267 247 12 12 chr6 123778716 123778797 -65500757 + (TA)n Simple_repeat Simple_repeat 2 82 0 1190 239 27 27 chr6 123778803 123779137 -65500417 - L1MC4 LINE L1 -137 7905 7572 1098 164 80 0 chr6 123779142 123779343 -65500211 + MER20 DNA MER1_type 1 217 -2 1237 198 45 0 chr6 123779373 123779620 -65499934 - L1MD1 LINE L1 0 6242 5985 1565 164 55 4 chr6 123779950 123780225 -65499329 + AluJb SINE Alu 3 291 -21 532 219 144 25 chr6 123780330 123780447 -65499107 - L1ME3A LINE L1 -282 5888 5786 2242 109 7 0 chr6 123780447 123780749 -65498805 - AluSq SINE Alu -9 304 1 532 219 144 25 chr6 123780749 123780985 -65498569 - L1ME3A LINE L1 -384 5786 5492 2230 110 0 7 chr6 123781006 123781316 -65498238 - AluSc SINE Alu -1 308 1 345 111 0 0 chr6 123781984 123782038 -65497516 - Alu SINE Alu 0 302 249 1890 172 3 3 chr6 123782442 123782745 -65496809 + AluJb SINE Alu 1 303 -9 1379 204 19 94 chr6 123783097 123783523 -65496031 + L1MB2 LINE L1 4669 5062 -1084 477 145 0 0 chr6 123783526 123783595 -65495959 + AluS SINE Alu 2 70 -242 835 131 8 0 chr6 123783595 123783717 -65495837 + AluSg/x SINE Alu 172 294 -15 961 197 21 88 chr6 123783717 123783825 -65495729 + L1MB2 LINE L1 5049 5163 -993 2381 85 0 0 chr6 123783825 123784120 -65495434 + AluSg SINE Alu 1 295 -15 961 197 21 88 chr6 123784120 123784258 -65495296 + L1MB2 LINE L1 5163 5281 -875 2015 121 24 0 chr6 123784258 123784548 -65495006 + AluSq SINE Alu 1 297 -16 961 197 21 88 chr6 123784548 123784601 -65494953 + L1MB2 LINE L1 5281 5336 -820 936 175 0 45 chr6 123784602 123784779 -65494775 + FRAM SINE Alu 6 174 -2 545 128 0 4 chr6 123784791 123784884 -65494670 + L1MB2 LINE L1 5350 5442 -727 3126 127 48 71 chr6 123784884 123785490 -65494064 - LTR14B LTR ERVK 0 608 17 1314 192 16 110 chr6 123785490 123785658 -65493896 + L1M2 LINE L1 5437 5555 -742 1878 158 0 3 chr6 123785658 123785943 -65493611 + AluJb SINE Alu 1 284 -28 1314 192 16 110 chr6 123785943 123786119 -65493435 + L1M2 LINE L1 5555 5746 -551 870 152 63 6 chr6 123786521 123786679 -65492875 + L1MD2 LINE L1 5728 5894 -465 1605 126 4 0 chr6 123786679 123786917 -65492637 + L1MB2 LINE L1 5587 5825 -346 1145 175 31 48 chr6 123786919 123787147 -65492407 + AluJo SINE Alu 1 224 -88 748 206 101 76 chr6 123787155 123787199 -65492355 + L1MD2 LINE L1 5842 5883 -476 1895 110 40 23 chr6 123787199 123787499 -65492055 + L1MB2 LINE L1 5860 6164 -7 748 206 101 76 chr6 123787499 123787730 -65491824 + L1MD2 LINE L1 5883 6124 -235 1712 141 159 21 chr6 123787730 123788057 -65491497 + THE1C LTR MaLR 1 372 -3 11129 106 29 19 chr6 123788057 123789435 -65490119 + THE1C-int LTR MaLR 4 1404 -176 2423 63 7 10 chr6 123789435 123789738 -65489816 - AluY SINE Alu -9 302 1 11129 106 29 19 chr6 123789738 123789917 -65489637 + THE1C-int LTR MaLR 1404 1580 0 1943 123 96 21 chr6 123789917 123790251 -65489303 + THE1C LTR MaLR 17 375 0 507 239 85 45 chr6 123790252 123790453 -65489101 + L1MD2 LINE L1 6121 6329 -30 2408 93 0 0 chr6 123790453 123790754 -65488800 - AluSc SINE Alu -8 301 1 228 216 0 0 chr6 123790800 123790851 -65488703 + GA-rich Low_complexity Low_complexity 2 52 0 563 278 37 6 chr6 123790851 123791013 -65488541 + MIR3 SINE MIR 3 169 -39 1182 195 152 17 chr6 123791133 123791430 -65488124 + MER46C DNA MER2_type 2 338 0 45 19 0 0 chr6 123791585 123791637 -65487917 + AT_rich Low_complexity Low_complexity 1 52 0 1105 218 38 58 chr6 123792307 123792459 -65487095 + MIR SINE MIR 6 152 -110 1764 182 3 10 chr6 123792459 123792756 -65486798 + AluJb SINE Alu 1 295 -17 1105 218 38 58 chr6 123792756 123792864 -65486690 + MIR SINE MIR 152 261 -1 250 284 11 11 chr6 123793171 123793259 -65486295 + L1MEc LINE L1 40 127 -6269 * 550 226 51 0 chr6 123793246 123793383 -65486171 - L1ME1 LINE L1 -328 5838 5695 243 385 72 14 chr6 123793411 123793619 -65485935 - L2 LINE L2 -481 2833 2614 2282 122 0 0 chr6 123794343 123794655 -65484899 - AluSx SINE Alu 0 312 1 1153 266 120 34 chr6 123795369 123795812 -65483742 + MLT1J LTR MaLR 1 481 -30 520 235 93 6 chr6 123796099 123796261 -65483293 - ERVL LTR ERVL -785 4979 4804 1387 306 66 19 chr6 123796318 123797573 -65481981 - ERVL LTR ERVL -1089 4675 3287 453 314 14 42 chr6 123797925 123798175 -65481379 - ERVL LTR ERVL -2943 2053 1769 1934 134 19 38 chr6 123798275 123798588 -65480966 + AluSx SINE Alu 1 307 -5 1100 192 54 58 chr6 123798994 123799234 -65480320 - MER8 DNA MER2_type 0 239 1 2119 144 0 10 chr6 123799238 123799550 -65480004 - AluSx SINE Alu -3 309 1 936 178 0 18 chr6 123799631 123799794 -65479760 + FRAM SINE Alu 6 165 -11 1827 88 29 0 chr6 123799920 123800192 -65479362 - L1MA5A LINE L1 -3 6294 6015 34 0 0 0 chr6 123800245 123800279 -65479275 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr6 123801323 123801345 -65478209 + AT_rich Low_complexity Low_complexity 1 22 0 450 0 0 0 chr6 123801458 123801508 -65478046 + (TG)n Simple_repeat Simple_repeat 2 51 0 1572 213 0 7 chr6 123801508 123801795 -65477759 - AluJo SINE Alu -27 285 1 245 136 0 0 chr6 123801844 123801888 -65477666 - L1MA3 LINE L1 -5 6300 6257 183 205 0 0 chr6 123801896 123801935 -65477619 + (TA)n Simple_repeat Simple_repeat 2 40 0 5663 132 50 10 chr6 123801936 123803596 -65475958 - L1MA3 LINE L1 -50 6255 4545 2034 119 71 50 chr6 123803719 123804002 -65475552 + L1MA5 LINE L1 5856 6153 -147 1734 118 118 0 chr6 123804002 123804281 -65475273 - AluSx SINE Alu 0 312 1 2034 119 71 50 chr6 123804281 123804433 -65475121 + L1MA5 LINE L1 6153 6300 0 480 281 77 46 chr6 123804811 123805007 -65474547 + MIR SINE MIR 14 215 -47 1912 164 13 0 chr6 123805241 123805540 -65474014 + AluJb SINE Alu 1 303 -9 379 220 144 38 chr6 123805608 123805740 -65473814 + MIR SINE MIR 46 191 -71 2281 109 3 0 chr6 123805960 123806262 -65473292 - AluSq SINE Alu -10 303 1 1982 166 0 0 chr6 123806271 123806572 -65472982 - AluSx SINE Alu -11 301 1 333 0 0 0 chr6 123806851 123806888 -65472666 + (TA)n Simple_repeat Simple_repeat 2 38 0 2330 88 3 0 chr6 123806888 123807183 -65472371 - AluSp SINE Alu -13 300 5 215 320 39 39 chr6 123807585 123807688 -65471866 + L2 LINE L2 2980 3082 -190 404 262 90 14 chr6 123807692 123807837 -65471717 + Charlie8 DNA MER1_type 127 282 -2135 1498 193 10 45 chr6 123807954 123808244 -65471310 - AluJo SINE Alu -32 280 1 200 361 133 25 chr6 123808433 123808591 -65470963 + L3b LINE CR1 1278 1452 -131 2090 120 29 62 chr6 123809366 123809740 -65469814 - THE1B LTR MaLR -2 362 1 11234 96 28 7 chr6 123809740 123810808 -65468746 - THE1B-int LTR MaLR 0 1580 469 2487 56 0 0 chr6 123810808 123811095 -65468459 - AluY SINE Alu -9 302 16 11234 96 28 7 chr6 123811095 123811574 -65467980 - THE1B-int LTR MaLR -1111 469 1 2303 111 36 25 chr6 123811574 123811934 -65467620 - THE1B LTR MaLR 0 364 1 1938 154 3 22 chr6 123812442 123812753 -65466801 + AluJb SINE Alu 1 305 -7 28 48 0 0 chr6 123813915 123813957 -65465597 + AT_rich Low_complexity Low_complexity 1 42 0 244 188 163 25 chr6 123813969 123814049 -65465505 - L1ME4a LINE L1 -47 6074 5984 488 281 94 3 chr6 123814076 123814364 -65465190 - L1ME4a LINE L1 -206 5915 5602 422 290 117 34 chr6 123814402 123814681 -65464873 - L1ME4a LINE L1 -589 5532 5239 26 30 0 0 chr6 123814687 123814720 -65464834 + AT_rich Low_complexity Low_complexity 1 33 0 4076 213 45 28 chr6 123814736 123814953 -65464601 - L1MD2 LINE L1 -1 6358 6146 261 0 0 0 chr6 123814953 123814982 -65464572 + (TG)n Simple_repeat Simple_repeat 2 30 0 4076 213 45 28 chr6 123814982 123816417 -65463137 - L1MD2 LINE L1 -213 6146 4679 423 204 83 99 chr6 123817620 123817801 -65461753 + MER5B DNA MER1_type 1 178 0 1939 173 110 58 chr6 123817916 123817985 -65461569 - MLT1D LTR MaLR 0 505 441 2139 124 0 9 chr6 123817985 123818300 -65461254 - AluSx SINE Alu 0 312 1 1939 173 110 58 chr6 123818300 123818710 -65460844 - MLT1D LTR MaLR -64 441 1 21 0 0 0 chr6 123818769 123818790 -65460764 + AT_rich Low_complexity Low_complexity 1 21 0 351 65 0 0 chr6 123818965 123819011 -65460543 + (TG)n Simple_repeat Simple_repeat 2 47 0 2038 120 3 10 chr6 123819022 123819313 -65460241 - AluSx SINE Alu -23 289 1 402 280 62 18 chr6 123819314 123819530 -65460024 - L1ME LINE L1 -449 5672 5445 34 0 0 0 chr6 123819690 123819724 -65459830 + AT_rich Low_complexity Low_complexity 1 34 0 771 129 0 9 chr6 123819724 123819840 -65459714 - FLAM_C SINE Alu -25 118 4 27 0 0 0 chr6 123821621 123821648 -65457906 + AT_rich Low_complexity Low_complexity 1 27 0 309 319 125 6 chr6 123822625 123822785 -65456769 + L2 LINE L2 1844 2022 -1292 1782 113 4 0 chr6 123823041 123823271 -65456283 + AluSx SINE Alu 17 247 -65 1476 181 35 4 chr6 123823271 123823530 -65456024 - AluJo SINE Alu -45 267 1 561 312 137 26 chr6 123823616 123824150 -65455404 + L1MC4a LINE L1 4626 5212 -934 906 202 97 97 chr6 123824223 123824250 -65455304 + L1MC4a LINE L1 5304 5330 -2478 2425 85 3 3 chr6 123824250 123824556 -65454998 + AluSx SINE Alu 1 306 -6 906 202 97 97 chr6 123824556 123824603 -65454951 + L1MC4a LINE L1 5330 5376 -2432 2429 80 3 10 chr6 123824603 123824916 -65454638 + AluSq SINE Alu 2 312 -1 1959 161 6 14 chr6 123824925 123825272 -65454282 + MER2 DNA MER2_type 1 344 0 906 202 97 97 chr6 123825272 123825517 -65454037 + L1MC4a LINE L1 5383 5634 -2174 2159 117 10 3 chr6 123825604 123825902 -65453652 + AluSx SINE Alu 1 300 -12 1988 117 4 0 chr6 123826022 123826318 -65453236 + AluSx SINE Alu 21 317 0 247 213 0 0 chr6 123826324 123826371 -65453183 + L1MC4a LINE L1 5892 5938 -1870 269 351 153 17 chr6 123826682 123827035 -65452519 + L2 LINE L2 2833 3233 -80 246 146 329 0 chr6 123827038 123827120 -65452434 + MIR SINE MIR 149 257 -5 522 206 70 127 chr6 123828013 123828241 -65451313 + MER102a DNA MER1_type 116 330 0 1941 124 62 7 chr6 123828477 123828750 -65450804 + AluSx SINE Alu 1 288 -24 201 74 0 0 chr6 123828759 123828786 -65450768 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2057 122 0 3 chr6 123828791 123829078 -65450476 + AluSg SINE Alu 1 286 -24 2214 142 47 2 chr6 123829330 123829739 -65449815 - L1MB4 LINE L1 -7 6173 5747 395 265 144 30 chr6 123830093 123830225 -65449329 + MIR3 SINE MIR 54 200 -8 657 155 0 9 chr6 123830734 123830850 -65448704 - L1PB4 LINE L1 -7 6149 6035 2805 199 21 42 chr6 123830854 123830923 -65448631 - L1M2 LINE L1 -3897 2952 2883 2771 7 0 0 chr6 123830923 123831224 -65448330 - AluYa5 SINE Alu -10 301 1 2805 199 21 42 chr6 123831224 123831974 -65447580 - L1M2 LINE L1 -3966 2883 2133 2482 120 3 11 chr6 123831984 123832351 -65447203 + THE1B LTR MaLR 1 364 0 9989 109 55 11 chr6 123832351 123833864 -65445690 + THE1B-int LTR MaLR 1 1580 0 1039 103 35 15 chr6 123833864 123834034 -65445520 + THE1C LTR MaLR 1 149 -226 868 104 90 0 chr6 123834075 123834209 -65445345 + THE1C LTR MaLR 154 299 -65 334 253 35 0 chr6 123834225 123834312 -65445242 + L1MC4 LINE L1 6614 6703 -1339 183 205 0 0 chr6 123834316 123834355 -65445199 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 327 58 115 0 chr6 123834355 123834407 -65445147 + THE1B LTR MaLR 307 364 0 260 228 0 0 chr6 123834409 123834466 -65445088 - L1PBb LINE L1 -4636 2213 2157 2108 125 3 3 chr6 123834466 123834793 -65444761 - AluSx SINE Alu 0 312 1 1011 127 0 0 chr6 123834793 123834927 -65444627 - AluSg SINE Alu -176 134 1 1831 224 70 24 chr6 123834928 123835635 -65443919 - L1PBb LINE L1 -4784 2066 1336 501 320 0 0 chr6 123835625 123835797 -65443757 - L1PBb LINE L1 -5290 1559 1388 * 275 326 53 15 chr6 123835946 123836078 -65443476 - L1PBb LINE L1 -5920 930 794 921 300 52 65 chr6 123836218 123836955 -65442599 - L1PBb LINE L1 -6122 727 1 463 278 250 6 chr6 123837547 123837727 -65441827 + MIR SINE MIR 12 235 -27 5889 195 38 28 chr6 123838219 123839654 -65439900 - Charlie1a DNA MER1_type -4 1451 2 1902 143 9 38 chr6 123839803 123840118 -65439436 + AluJo SINE Alu 6 311 -1 3773 261 92 22 chr6 123840214 123842143 -65437411 + L1MEc LINE L1 25 1817 -4398 2452 143 41 2 chr6 123842143 123842555 -65436999 + MSTA LTR MaLR 1 428 0 3773 261 92 22 chr6 123842555 123842965 -65436589 + L1MEc LINE L1 1817 2197 -4018 532 113 0 0 chr6 123842965 123843045 -65436509 + MADE1 DNA Mariner 1 80 0 3773 261 92 22 chr6 123843045 123843805 -65435749 + L1MEc LINE L1 2197 3292 -2923 231 259 65 43 chr6 123844813 123844952 -65434602 + HAL1b LINE L1 1200 1341 -7 5639 195 80 47 chr6 123846016 123846581 -65432973 - L1MC3 LINE L1 -6 7989 7444 336 185 31 0 chr6 123846581 123846646 -65432908 - MLT1F1 LTR MaLR -443 124 58 5639 195 80 47 chr6 123846646 123848032 -65431522 - L1MC3 LINE L1 -551 7444 5689 2519 35 0 32 chr6 123848032 123848342 -65431212 + AluY SINE Alu 1 300 -11 5639 195 80 47 chr6 123848342 123848514 -65431040 - L1MC3 LINE L1 -2306 5689 5524 281 256 33 0 chr6 123848514 123848604 -65430950 - MER94 DNA DNA -35 99 7 342 300 27 9 chr6 123850132 123850242 -65429312 + MIR3 SINE MIR 94 205 -3 21 0 0 0 chr6 123851029 123851050 -65428504 + AT_rich Low_complexity Low_complexity 1 21 0 707 149 0 9 chr6 123851439 123851553 -65428001 - FLAM_A SINE Alu -10 132 20 194 184 0 26 chr6 123851768 123851806 -65427748 - L2 LINE L2 -4 3309 3273 3705 173 96 34 chr6 123852043 123852116 -65427438 - L1MB7 LINE L1 -7 6675 6608 2388 98 0 6 chr6 123852116 123852431 -65427123 - AluSq SINE Alu 0 313 1 3705 173 96 34 chr6 123852431 123853463 -65426091 - L1MB7 LINE L1 -74 6608 5641 2225 117 13 3 chr6 123853463 123853770 -65425784 - AluSx SINE Alu -2 310 1 3705 173 96 34 chr6 123853770 123853933 -65425621 - L1MB7 LINE L1 -1041 5641 5490 1829 185 3 3 chr6 123853933 123854235 -65425319 - AluJb SINE Alu -10 302 1 3705 173 96 34 chr6 123854235 123854350 -65425204 - L1MB7 LINE L1 -1192 5490 5228 262 333 9 29 chr6 123854575 123854680 -65424874 - L2 LINE L2 -39 3274 3172 243 337 65 0 chr6 123854711 123854803 -65424751 + L2 LINE L2 2690 2787 -527 414 308 39 15 chr6 123855595 123855725 -65423829 - L2 LINE L2 -1 3312 3180 2948 227 100 16 chr6 123855925 123856756 -65422798 + L1MCb LINE L1 3 903 -5142 369 285 76 50 chr6 123857158 123857554 -65422000 + L1MCb LINE L1 2834 3239 -3325 1971 174 77 14 chr6 123857571 123857985 -65421569 + L1MC3 LINE L1 6976 7415 -370 2028 132 14 0 chr6 123857995 123858284 -65421270 - AluSx SINE Alu -17 295 3 1079 277 109 2 chr6 123858291 123858685 -65420869 - L1MB7 LINE L1 -1751 4893 4458 31 0 0 0 chr6 123858709 123858740 -65420814 + AT_rich Low_complexity Low_complexity 1 31 0 3170 44 0 3 chr6 123858740 123859129 -65420425 - L1PA3 LINE L1 0 6155 5768 356 274 18 9 chr6 123860428 123860541 -65419013 - MIR3 SINE MIR -14 194 81 2192 138 29 0 chr6 123860600 123860949 -65418605 + MER46B DNA MER2_type 3 236 0 4173 231 79 47 chr6 123861391 123863561 -65415993 - L1MB7 LINE L1 -2506 4138 1836 4085 126 15 127 chr6 123863562 123865115 -65414439 + pTR5 LTR ERV1 742 2606 0 2018 247 83 19 chr6 123865123 123865903 -65413651 - L1MB7 LINE L1 -4834 1708 879 288 272 117 19 chr6 123865925 123866087 -65413467 - L1MB7 LINE L1 -5614 928 751 241 265 88 10 chr6 123866579 123866681 -65412873 - L1ME LINE L1 -5959 111 2 4662 23 3 1 chr6 123868220 123869100 -65410454 - L1P2 LINE L1 -337 5818 4937 7167 29 5 0 chr6 123869102 123869952 -65409602 + L1P2 LINE L1 4080 4933 -1213 2768 222 125 33 chr6 123869961 123871010 -65408544 - L1M4 LINE L1 -2192 3954 2810 296 222 0 0 chr6 123871437 123871491 -65408063 + L2 LINE L2 3201 3254 -18 2281 95 7 3 chr6 123871658 123871963 -65407591 - AluSx SINE Alu -6 306 1 2288 94 0 10 chr6 123872653 123872952 -65406602 + AluSc SINE Alu 3 298 -11 2488 50 7 3 chr6 123873184 123873487 -65406067 + AluY SINE Alu 1 304 -7 400 333 91 7 chr6 123873882 123874110 -65405444 + MIR SINE MIR 4 254 -8 2185 98 10 3 chr6 123874736 123875031 -65404523 - AluSg SINE Alu -13 297 1 1505 186 41 7 chr6 123875920 123876210 -65403344 - AluJb SINE Alu -12 300 1 513 228 94 34 chr6 123876211 123876360 -65403194 + MER20 DNA MER1_type 57 214 -5 1601 196 40 60 chr6 123876360 123876484 -65403070 - L1M4 LINE L1 -1075 5071 4946 2249 115 0 6 chr6 123876484 123876796 -65402758 - AluSg SINE Alu 0 310 1 1601 196 40 60 chr6 123876796 123877124 -65402430 - L1M4 LINE L1 -1200 4946 4628 280 206 59 15 chr6 123877124 123877192 -65402362 - AluJo SINE Alu -9 293 223 861 176 94 12 chr6 123877192 123877362 -65402192 - AluJo SINE Alu -128 184 1 2306 210 90 33 chr6 123877366 123877650 -65401904 - L1M4 LINE L1 -1512 4634 4368 2280 95 3 0 chr6 123877650 123877945 -65401609 - AluSc SINE Alu -13 296 1 2306 210 90 33 chr6 123877945 123878111 -65401443 - L1M4 LINE L1 -1778 4368 4213 2117 96 3 59 chr6 123878111 123878433 -65401121 - AluSq SINE Alu -9 304 1 2306 210 90 33 chr6 123878433 123878713 -65400841 - L1M4 LINE L1 -1933 4213 3861 456 314 96 6 chr6 123879563 123879719 -65399835 - MER5B DNA MER1_type -7 171 2 2127 93 41 14 chr6 123880247 123880538 -65399016 + AluSc SINE Alu 1 299 -10 22 35 0 0 chr6 123880654 123880683 -65398871 + AT_rich Low_complexity Low_complexity 1 29 0 214 330 18 46 chr6 123882426 123882535 -65397019 - MIR SINE MIR 0 262 157 651 170 108 80 chr6 123882563 123882775 -65396779 - MER20 DNA MER1_type 0 219 2 1601 165 38 34 chr6 123884645 123884936 -65394618 - AluJo SINE Alu -20 292 1 2231 214 74 45 chr6 123885151 123885682 -65393872 + L1MC4 LINE L1 7243 7757 -285 2208 98 0 0 chr6 123885682 123885998 -65393556 - AluSq SINE Alu 0 316 1 2231 214 74 45 chr6 123885998 123886021 -65393533 + L1MC4 LINE L1 7757 7778 -264 2490 51 0 3 chr6 123886021 123886314 -65393240 - AluY SINE Alu -19 292 1 2231 214 74 45 chr6 123886314 123886450 -65393104 + L1MC4 LINE L1 7778 8036 -6 518 206 238 6 chr6 123886472 123886632 -65392922 + MIR SINE MIR 29 225 -37 491 252 113 19 chr6 123887073 123887232 -65392322 + MIR SINE MIR 6 179 -83 24 32 0 0 chr6 123887597 123887628 -65391926 + AT_rich Low_complexity Low_complexity 1 31 0 2010 81 48 55 chr6 123887902 123888211 -65391343 + AluSg SINE Alu 1 307 -3 418 255 96 58 chr6 123888857 123889045 -65390509 - L2 LINE L2 -6 3307 3113 244 247 97 0 chr6 123889051 123889144 -65390410 + MIR SINE MIR 111 212 -50 387 215 95 38 chr6 123891709 123891867 -65387687 - L1ME4a LINE L1 -119 6002 5836 362 202 185 34 chr6 123892008 123892127 -65387427 - MER112 DNA MER1_type -1 259 123 695 120 98 38 chr6 123892357 123892490 -65387064 + FLAM_C SINE Alu 3 143 0 25 31 0 0 chr6 123892883 123892915 -65386639 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 123893257 123893279 -65386275 + AT_rich Low_complexity Low_complexity 1 22 0 481 230 115 77 chr6 123893406 123893615 -65385939 + MIR SINE MIR 19 235 -27 697 274 153 50 chr6 123893850 123894404 -65385150 + L2 LINE L2 2084 2694 -620 21 36 0 0 chr6 123895263 123895291 -65384263 + AT_rich Low_complexity Low_complexity 1 28 0 468 336 97 27 chr6 123895754 123896052 -65383502 + L2 LINE L2 2995 3313 0 259 310 214 46 chr6 123896229 123896441 -65383113 - L3 LINE CR1 -9 1568 1393 770 168 8 0 chr6 123896441 123896572 -65382982 + FLAM_C SINE Alu 1 132 -1 259 310 214 46 chr6 123896572 123896662 -65382892 - L3 LINE CR1 -184 1393 1215 252 342 70 9 chr6 123897130 123897244 -65382310 - L3 LINE CR1 -434 1143 1023 187 31 62 0 chr6 123897262 123897294 -65382260 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 271 273 187 56 chr6 123897844 123898042 -65381512 - MIR SINE MIR -18 244 21 982 197 28 71 chr6 123898095 123898349 -65381205 + MIR SINE MIR 6 248 -14 254 29 29 0 chr6 123898387 123898422 -65381132 + (TG)n Simple_repeat Simple_repeat 1 36 0 455 0 18 0 chr6 123898573 123898628 -65380926 + (CA)n Simple_repeat Simple_repeat 2 57 0 1828 136 50 23 chr6 123899164 123899465 -65380089 - AluSx SINE Alu -3 309 1 1605 175 16 29 chr6 123900262 123900571 -65378983 - AluJb SINE Alu -6 306 2 1463 167 42 63 chr6 123900599 123900917 -65378637 + AluJo SINE Alu 1 312 0 1887 179 0 3 chr6 123901608 123901910 -65377644 + AluJb SINE Alu 1 301 -11 28 29 0 0 chr6 123902328 123902363 -65377191 + AT_rich Low_complexity Low_complexity 1 35 0 189 350 136 6 chr6 123902604 123902781 -65376773 - MIR SINE MIR -11 251 52 1962 161 0 3 chr6 123903038 123903336 -65376218 + AluJo SINE Alu 1 297 -15 191 339 0 0 chr6 123903632 123903688 -65375866 + L2 LINE L2 3258 3313 0 291 355 89 8 chr6 123903692 123903816 -65375738 - MIR3 SINE MIR -63 145 12 652 211 76 32 chr6 123905048 123905233 -65374321 + MLT1J2 LTR MaLR 2 194 -256 435 234 64 25 chr6 123905240 123905418 -65374136 + MLT1J2 LTR MaLR 242 438 -12 1105 158 0 0 chr6 123905418 123905589 -65373965 - AluSg/x SINE Alu -6 304 134 191 236 0 111 chr6 123905628 123905700 -65373854 + L2 LINE L2 3209 3272 0 1215 183 33 17 chr6 123905736 123905977 -65373577 + MLT1B LTR MaLR 1 245 -145 266 250 185 0 chr6 123906168 123906260 -65373294 + MIR SINE MIR 154 262 0 182 365 82 27 chr6 123906201 123906420 -65373134 - L2 LINE L2 -488 2826 2596 * 186 271 93 56 chr6 123906422 123906529 -65373025 - MIR SINE MIR -132 130 20 251 253 27 0 chr6 123906598 123906673 -65372881 + MER103 DNA DNA 2 78 -88 1018 92 8 0 chr6 123906867 123906998 -65372556 + AluSq/x SINE Alu 1 132 -181 278 208 83 28 chr6 123907016 123907088 -65372466 - MIR SINE MIR -67 141 66 607 234 269 0 chr6 123907111 123907286 -65372268 + MIR SINE MIR 41 262 0 1863 117 0 8 chr6 123907686 123907943 -65371611 + AluSg1 SINE Alu 1 255 -54 2095 132 3 0 chr6 123908577 123908872 -65370682 - AluSx SINE Alu -16 296 1 2283 110 3 25 chr6 123909033 123909352 -65370202 + AluSx SINE Alu 1 312 0 32 43 0 0 chr6 123909851 123909897 -65369657 + AT_rich Low_complexity Low_complexity 1 46 0 293 268 0 0 chr6 123910069 123910140 -65369414 + Tigger5 DNA MER2_type 2253 2323 0 451 310 69 0 chr6 123911845 123911990 -65367564 + MIR SINE MIR 1 155 -107 1656 140 86 7 chr6 123912601 123912880 -65366674 - AluJb SINE Alu -11 301 1 1989 142 13 3 chr6 123912902 123913205 -65366349 - AluSx SINE Alu -6 306 1 263 341 57 32 chr6 123913372 123913618 -65365936 - L2 LINE L2 -2248 1066 815 324 240 13 27 chr6 123914230 123914305 -65365249 - L2 LINE L2 0 3272 3199 314 343 127 5 chr6 123914312 123914525 -65365029 - MIR SINE MIR -4 258 20 21 0 0 0 chr6 123914744 123914765 -65364789 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 123916232 123916254 -65363300 + AT_rich Low_complexity Low_complexity 1 22 0 371 20 0 20 chr6 123916388 123916437 -65363117 + (TG)n Simple_repeat Simple_repeat 2 49 0 2130 109 7 7 chr6 123916448 123916741 -65362813 - AluSx SINE Alu -19 293 1 322 299 63 116 chr6 123919626 123919824 -65359730 + L2 LINE L2 3014 3196 -76 203 0 37 0 chr6 123919824 123919851 -65359703 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 322 299 63 116 chr6 123919851 123919920 -65359634 + L2 LINE L2 3196 3267 -5 27 0 0 0 chr6 123920341 123920368 -65359186 + AT_rich Low_complexity Low_complexity 1 27 0 1343 193 122 0 chr6 123921306 123921576 -65357978 - AluJo SINE Alu -9 303 1 2274 122 0 3 chr6 123921791 123922103 -65357451 + AluSx SINE Alu 1 311 -1 480 299 95 35 chr6 123922430 123922661 -65356893 + MIR SINE MIR 12 256 -6 972 218 50 27 chr6 123922818 123923038 -65356516 - MIR SINE MIR -35 227 3 413 313 55 12 chr6 123923333 123923496 -65356058 + L2 LINE L2 2937 3106 -166 640 312 23 34 chr6 123923527 123923790 -65355764 - MIR SINE MIR 0 262 3 1916 147 3 42 chr6 123923937 123924250 -65355304 + AluJb SINE Alu 1 301 -11 1942 129 0 4 chr6 123924263 123924526 -65355028 + AluSc SINE Alu 34 295 -14 2245 173 66 28 chr6 123924587 123925130 -65354424 - LTR48 LTR ERV1 0 787 224 2386 106 0 0 chr6 123925130 123925441 -65354113 - AluY SINE Alu 0 311 1 699 133 26 0 chr6 123925447 123925560 -65353994 + MLT1B LTR MaLR 275 390 0 195 209 0 47 chr6 123927077 123927120 -65352434 + L2 LINE L2 3263 3303 -10 2383 84 51 25 chr6 123928907 123929262 -65350292 - THE1B LTR MaLR 0 364 1 286 301 59 52 chr6 123929378 123929514 -65350040 + MIR3 SINE MIR 51 187 -21 247 259 155 26 chr6 123929567 123929683 -65349871 + L2 LINE L2 3183 3313 0 415 279 66 22 chr6 123929847 123929983 -65349571 - MIR SINE MIR -73 189 48 204 337 81 12 chr6 123930305 123930391 -65349163 + MIR SINE MIR 25 116 -92 902 269 40 8 chr6 123930733 123930982 -65348572 - MIR SINE MIR 0 262 6 288 176 94 24 chr6 123931033 123931118 -65348436 - MER113 DNA MER1_type? -420 101 11 604 285 65 16 chr6 123931577 123931886 -65347668 + L1ME4a LINE L1 5603 5926 -195 1238 202 154 26 chr6 123932093 123932444 -65347110 + MSTD LTR MaLR 1 396 0 739 169 169 25 chr6 123932447 123932690 -65346864 - MER33 DNA MER1_type -36 288 11 24 0 0 0 chr6 123932696 123932720 -65346834 + AT_rich Low_complexity Low_complexity 1 24 0 1806 172 24 10 chr6 123932878 123933169 -65346385 + AluJo SINE Alu 1 295 -17 635 201 58 11 chr6 123933317 123933491 -65346063 - L1MB7 LINE L1 0 6184 6003 1652 112 154 0 chr6 123933500 123933760 -65345794 - AluSg SINE Alu 0 300 1 259 308 0 0 chr6 123934601 123934666 -65344888 + (TATG)n Simple_repeat Simple_repeat 3 67 0 2158 94 6 12 chr6 123934698 123935026 -65344528 - LTR17 LTR ERV1 -454 326 1 2296 52 3 0 chr6 123935028 123935316 -65344238 - HERV17 LTR ERV1 -3 8623 8335 * 5614 48 4 3 chr6 123935306 123936031 -65343523 - HERV17 LTR ERV1 -1078 7548 6823 2036 155 3 19 chr6 123936270 123936586 -65342968 - AluJb SINE Alu -1 311 1 221 294 0 7 chr6 123936742 123936873 -65342681 + (TA)n Simple_repeat Simple_repeat 2 132 0 1518 164 80 60 chr6 123936873 123937209 -65342345 + MER2 DNA MER2_type 1 343 -1 1973 122 7 0 chr6 123937402 123937680 -65341874 + AluSx SINE Alu 1 280 -32 207 0 0 0 chr6 123937680 123937703 -65341851 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2228 85 3 3 chr6 123937766 123938061 -65341493 + AluSg SINE Alu 1 295 -15 2299 88 0 3 chr6 123938679 123938998 -65340556 - AluSq SINE Alu 0 322 5 652 211 207 5 chr6 123939219 123939432 -65340122 - MLT1I LTR MaLR -7 402 147 385 270 41 40 chr6 123939764 123939935 -65339619 + MIR SINE MIR 42 214 -48 256 209 30 0 chr6 123940018 123940085 -65339469 + Charlie4 DNA MER1_type 17 85 -1876 * 524 214 48 0 chr6 123940080 123940206 -65339348 + Charlie4 DNA MER1_type 1825 1956 -5 2331 85 0 13 chr6 123940212 123940517 -65339037 + AluSx SINE Alu 1 301 -11 470 324 112 0 chr6 123940639 123940818 -65338736 + MIR SINE MIR 37 235 -27 720 167 0 0 chr6 123940910 123941024 -65338530 + FLAM_A SINE Alu 11 124 -18 24 0 0 0 chr6 123941024 123941048 -65338506 + AT_rich Low_complexity Low_complexity 1 24 0 897 118 0 29 chr6 123943578 123943714 -65335840 - FLAM_C SINE Alu 0 133 2 1802 161 0 60 chr6 123943780 123944096 -65335458 + AluJo SINE Alu 1 297 -15 956 241 63 53 chr6 123944525 123945033 -65334521 - L2 LINE L2 -95 3218 2713 263 333 100 17 chr6 123945257 123945377 -65334177 + L3 LINE CR1 1334 1463 -114 1003 155 106 53 chr6 123945377 123945584 -65333970 + AluJb SINE Alu 1 218 -94 1684 162 17 33 chr6 123945734 123946036 -65333518 - AluJb SINE Alu -15 297 1 2413 100 0 0 chr6 123946044 123946355 -65333199 - AluSx SINE Alu -1 311 1 2420 61 3 26 chr6 123946379 123946692 -65332862 + AluSx SINE Alu 1 306 -6 356 214 102 10 chr6 123947035 123947133 -65332421 - L2 LINE L2 0 3313 3207 688 154 8 17 chr6 123947298 123947415 -65332139 + FLAM_C SINE Alu 4 119 -24 968 170 0 18 chr6 123947435 123947606 -65331948 - FRAM SINE Alu -15 161 1 2269 120 3 0 chr6 123947625 123947925 -65331629 + AluSx SINE Alu 1 301 -11 301 282 58 19 chr6 123947974 123948077 -65331477 - L1ME LINE L1 -534 5636 5530 454 284 64 44 chr6 123948271 123948377 -65331177 - L1ME LINE L1 -629 5533 5431 2300 88 13 3 chr6 123948377 123948682 -65330872 - AluSc SINE Alu -1 308 1 454 284 64 44 chr6 123948682 123948907 -65330647 - L1ME LINE L1 -731 5431 5212 2270 115 0 6 chr6 123948907 123949219 -65330335 - AluSx SINE Alu -2 310 1 454 284 64 44 chr6 123949219 123949294 -65330260 - L1ME LINE L1 -950 5212 5140 2043 132 30 0 chr6 123949294 123949597 -65329957 - AluSq SINE Alu -1 312 1 454 284 64 44 chr6 123949597 123949948 -65329606 - L1ME LINE L1 -1022 5140 4762 719 214 0 0 chr6 123949952 123950092 -65329462 - FLAM_C SINE Alu -3 140 1 356 256 95 54 chr6 123950092 123950260 -65329294 - L1ME LINE L1 -1370 4776 4602 642 204 66 0 chr6 123950375 123950527 -65329027 + MIR SINE MIR 20 181 -81 332 251 72 67 chr6 123950680 123950777 -65328777 + L1MC5 LINE L1 7730 7825 -136 2321 90 0 0 chr6 123950777 123951077 -65328477 - AluSq SINE Alu -13 300 1 332 251 72 67 chr6 123951077 123951174 -65328380 + L1MC5 LINE L1 7825 7925 -36 21 0 0 0 chr6 123951379 123951400 -65328154 + AT_rich Low_complexity Low_complexity 1 21 0 2037 128 30 7 chr6 123951400 123951705 -65327849 - AluSp SINE Alu -1 312 1 2177 106 3 0 chr6 123951709 123952015 -65327539 - AluSp SINE Alu 0 309 3 1907 147 3 31 chr6 123952100 123952419 -65327135 - AluJo SINE Alu -2 310 1 1764 146 0 76 chr6 123952434 123952564 -65326990 + AluJo SINE Alu 3 141 -171 2271 97 0 13 chr6 123952564 123952872 -65326682 - AluY SINE Alu -7 304 1 1764 146 0 76 chr6 123952872 123953057 -65326497 + AluJo SINE Alu 141 294 -18 244 227 61 15 chr6 123953100 123953166 -65326388 + L3 LINE CR1 1502 1570 -7 2069 131 0 0 chr6 123953250 123953560 -65325994 + AluSx SINE Alu 1 310 0 239 232 32 65 chr6 123953846 123954001 -65325553 + L1MC/D LINE L1 5775 5924 -1884 306 194 17 4 chr6 123954412 123954504 -65325050 - MLT1J LTR MaLR -274 175 72 303 82 82 0 chr6 123954748 123954822 -65324732 - AluJ/FRAM SINE Alu 0 307 230 2203 113 0 7 chr6 123955094 123955386 -65324168 + AluSx SINE Alu 1 290 -22 213 327 113 27 chr6 123955817 123955967 -65323587 - MIR3 SINE MIR -8 200 38 2256 102 3 0 chr6 123956211 123956505 -65323049 - AluSx SINE Alu -4 308 14 202 347 13 0 chr6 123956546 123956621 -65322933 + MIR SINE MIR 49 124 -138 2044 107 0 24 chr6 123957452 123957785 -65321769 - AluSx SINE Alu 0 326 1 22 0 0 0 chr6 123957951 123957973 -65321581 + AT_rich Low_complexity Low_complexity 1 22 0 407 188 69 20 chr6 123958381 123958482 -65321072 - MLT1H LTR MaLR -1 548 443 248 329 0 0 chr6 123958545 123958627 -65320927 - MLT1H LTR MaLR -218 331 250 1752 185 16 19 chr6 123959323 123959636 -65319918 - AluJo SINE Alu 0 312 1 275 203 0 29 chr6 123959785 123959854 -65319700 - MLT1H LTR MaLR 0 549 483 226 35 0 0 chr6 123959971 123960000 -65319554 - MLT1H LTR MaLR -392 157 129 265 298 85 0 chr6 123960081 123960198 -65319356 + MIR SINE MIR 60 189 -64 245 177 0 25 chr6 123960218 123960297 -65319257 - L1ME4a LINE L1 -2 6119 6043 1972 164 0 0 chr6 123960495 123960799 -65318755 + AluJb SINE Alu 1 304 -8 217 281 16 0 chr6 123960805 123960869 -65318685 + MIR SINE MIR 190 254 -8 1004 239 103 30 chr6 123961639 123962133 -65317421 - L1ME4a LINE L1 0 6121 5592 2161 70 4 0 chr6 123962183 123962441 -65317113 + AluSx SINE Alu 1 259 -53 609 125 0 0 chr6 123962442 123962538 -65317016 + AluSg/x SINE Alu 214 309 0 1518 121 116 0 chr6 123962541 123962765 -65316789 - AluJo SINE Alu -62 250 1 260 222 0 0 chr6 123962765 123962819 -65316735 - L1ME4a LINE L1 -513 5608 5555 717 219 141 16 chr6 123962833 123963025 -65316529 - MLT1J LTR MaLR 0 511 296 1858 135 22 41 chr6 123963376 123963694 -65315860 - AluJb SINE Alu 0 312 1 2187 105 0 10 chr6 123965055 123965351 -65314203 + AluSq SINE Alu 1 293 -20 2013 128 0 17 chr6 123965504 123965793 -65313761 + AluSx SINE Alu 5 288 -24 180 0 0 0 chr6 123965793 123965813 -65313741 + (CTA)n Simple_repeat Simple_repeat 1 20 0 1555 186 133 33 chr6 123965846 123966090 -65313464 - MER114 LTR ERV 0 648 430 408 20 0 0 chr6 123966090 123966139 -65313415 + (CA)n Simple_repeat Simple_repeat 1 49 0 1555 186 133 33 chr6 123966139 123966251 -65313303 - MER114 LTR ERV -218 430 331 2035 104 64 0 chr6 123966251 123966531 -65313023 + AluSq SINE Alu 1 298 -15 1555 186 133 33 chr6 123966531 123966723 -65312831 - MER114 LTR ERV -317 331 44 253 180 80 0 chr6 123967155 123967205 -65312349 - MER94 DNA DNA -73 61 8 700 269 0 0 chr6 123967212 123967361 -65312193 - MLT1J LTR MaLR -298 213 65 21 57 0 0 chr6 123967495 123967530 -65312024 + AT_rich Low_complexity Low_complexity 1 35 0 1741 169 13 26 chr6 123967581 123967894 -65311660 + AluJo SINE Alu 1 309 -3 2084 104 14 14 chr6 123969502 123969814 -65309740 - AluSq SINE Alu 0 313 1 2091 110 24 3 chr6 123972014 123972304 -65307250 - AluSx SINE Alu -16 296 1 24 0 0 0 chr6 123972502 123972526 -65307028 + AT_rich Low_complexity Low_complexity 1 24 0 567 134 47 148 chr6 123972526 123972675 -65306879 - AluJo SINE Alu -178 134 1 2262 121 0 3 chr6 123972678 123972985 -65306569 - AluY SINE Alu -5 306 1 309 91 0 0 chr6 123973223 123973267 -65306287 - MSTA LTR MaLR 0 426 383 2382 68 7 3 chr6 123973268 123973578 -65305976 + AluY SINE Alu 1 311 0 2195 113 7 3 chr6 123973599 123973909 -65305645 + AluSq SINE Alu 1 311 -2 2086 124 76 3 chr6 123973909 123974263 -65305291 - MSTA LTR MaLR -30 398 19 2482 60 3 0 chr6 123974517 123974818 -65304736 + AluY SINE Alu 1 302 -9 2322 96 0 37 chr6 123975774 123976096 -65303458 - AluSx SINE Alu -2 310 1 582 229 286 26 chr6 123976309 123976501 -65303053 - MIR SINE MIR 0 262 21 2322 86 10 3 chr6 123976663 123976955 -65302599 - AluSq SINE Alu -17 296 3 22 56 0 0 chr6 123976994 123977030 -65302524 + AT_rich Low_complexity Low_complexity 1 36 0 1727 188 24 0 chr6 123977559 123977852 -65301702 + AluSx SINE Alu 1 300 -12 25 31 0 0 chr6 123977906 123977938 -65301616 + AT_rich Low_complexity Low_complexity 1 32 0 1650 164 11 4 chr6 123977938 123978219 -65301335 - AluJo SINE Alu -29 283 1 2017 128 7 0 chr6 123978267 123978576 -65300978 - AluSx SINE Alu 0 311 1 743 180 8 0 chr6 123978601 123978729 -65300825 - FLAM_C SINE Alu -4 129 1 2264 106 0 0 chr6 123979185 123979488 -65300066 + AluSx SINE Alu 1 303 -9 236 242 0 61 chr6 123979781 123979847 -65299707 - MER112 DNA MER1_type -13 247 186 952 68 0 0 chr6 123979851 123979969 -65299585 - AluSp/q SINE Alu -5 308 191 2146 113 20 0 chr6 123979984 123980277 -65299277 + AluSq SINE Alu 1 299 -14 1916 99 57 25 chr6 123980323 123980606 -65298948 + AluSg SINE Alu 1 292 -18 24 32 0 0 chr6 123981112 123981143 -65298411 + AT_rich Low_complexity Low_complexity 1 31 0 2406 101 0 0 chr6 123981144 123981452 -65298102 + AluSg SINE Alu 1 308 -2 701 186 0 8 chr6 123981472 123981590 -65297964 - FLAM_C SINE Alu -21 122 6 261 279 44 0 chr6 123981881 123981949 -65297605 - MIR SINE MIR -57 151 81 2263 87 3 10 chr6 123982140 123982440 -65297114 + AluSg SINE Alu 1 298 -12 209 235 39 0 chr6 123982542 123982593 -65296961 + L2 LINE L2 3216 3268 -4 948 118 0 8 chr6 123982702 123982829 -65296725 - FLAM_C SINE Alu -17 126 1 2361 92 0 0 chr6 123984322 123984616 -65294938 + AluSg SINE Alu 1 294 -16 183 241 81 46 chr6 123986243 123986330 -65293224 - MIR SINE MIR 0 262 173 461 265 25 87 chr6 123986749 123986945 -65292609 - MIR3 SINE MIR -6 202 19 2142 91 0 63 chr6 123987438 123987756 -65291798 - AluSq SINE Alu -15 298 1 30 0 0 0 chr6 123989811 123989841 -65289713 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr6 123990030 123990057 -65289497 + (T)n Simple_repeat Simple_repeat 1 27 0 728 224 29 12 chr6 123991137 123991307 -65288247 - MIR SINE MIR -43 219 47 2438 90 3 0 chr6 123991318 123991629 -65287925 - AluSp SINE Alu -1 312 1 684 144 115 0 chr6 123991629 123991768 -65287786 - LTR1 LTR ERV1 -615 170 16 194 146 0 73 chr6 123992303 123992344 -65287210 - MIR SINE MIR -152 56 19 1514 162 52 11 chr6 123992649 123992921 -65286633 + AluJo SINE Alu 6 288 -24 2008 68 76 4 chr6 123992932 123993217 -65286337 + AluY SINE Alu 1 304 0 2538 65 3 0 chr6 123993830 123994140 -65285414 + AluY SINE Alu 1 311 0 1840 136 22 0 chr6 123994210 123994482 -65285072 - AluSx SINE Alu -10 302 25 28 0 0 0 chr6 123994737 123994765 -65284789 + AT_rich Low_complexity Low_complexity 1 28 0 2207 90 13 3 chr6 123994778 123995077 -65284477 + AluSx SINE Alu 1 302 -10 1451 215 29 4 chr6 123995077 123995350 -65284204 - AluJo SINE Alu -31 281 1 466 244 121 65 chr6 123995515 123995534 -65284020 - L1ME4a LINE L1 -4 6117 6101 2555 81 0 0 chr6 123995534 123995841 -65283713 + AluSx SINE Alu 1 307 -5 466 244 121 65 chr6 123995841 123996168 -65283386 - L1ME4a LINE L1 -20 6101 5734 2325 103 3 6 chr6 123996168 123996480 -65283074 - AluSx SINE Alu -1 311 1 466 244 121 65 chr6 123996480 123996612 -65282942 - L1ME4a LINE L1 -387 5734 5611 2671 211 8 11 chr6 123996638 123997170 -65282384 + MER68 LTR ERV1 33 562 0 2005 137 23 7 chr6 123997550 123997857 -65281697 - AluSx SINE Alu 0 312 1 2158 113 3 0 chr6 123997933 123998240 -65281314 + AluSq SINE Alu 1 308 0 1705 166 28 7 chr6 123998243 123998533 -65281021 + AluJo SINE Alu 1 296 -16 249 313 71 9 chr6 123998684 123998796 -65280758 - L2 LINE L2 -213 3059 2941 328 232 0 0 chr6 123998921 123998990 -65280564 - L1MEc LINE L1 -4650 1746 1678 1118 143 0 0 chr6 123998993 123999154 -65280400 - AluSg/x SINE Alu -15 297 137 323 297 28 21 chr6 123999184 123999329 -65280225 - L1MEc LINE L1 -4628 1587 1442 327 291 134 8 chr6 123999356 123999603 -65279951 - L1MEc LINE L1 -4997 1399 1122 3618 246 42 17 chr6 123999611 124000557 -65278997 - L1MEc LINE L1 -5383 1013 44 2334 103 3 0 chr6 124000971 124001282 -65278272 + AluSx SINE Alu 1 312 0 881 162 0 22 chr6 124001454 124001590 -65277964 - FLAM_A SINE Alu 0 133 1 1789 171 0 19 chr6 124001631 124001946 -65277608 - AluJo SINE Alu -3 309 1 199 254 16 48 chr6 124002277 124002340 -65277214 - L2 LINE L2 -219 3053 2993 1547 159 99 18 chr6 124002359 124002642 -65276912 + AluJb SINE Alu 1 306 -6 1009 282 91 45 chr6 124002703 124003143 -65276411 - L2 LINE L2 -1 3312 2853 353 138 17 0 chr6 124003143 124003201 -65276353 + FRAM/FAM SINE Alu 32 90 -76 232 240 80 0 chr6 124003357 124003407 -65276147 - L2 LINE L2 -6 3307 3254 2072 100 0 0 chr6 124003495 124003765 -65275789 - AluSq SINE Alu -12 301 32 257 269 0 0 chr6 124004355 124004407 -65275147 + MLT1F LTR MaLR 399 450 -92 861 150 0 0 chr6 124004416 124004549 -65275005 - AluJb SINE Alu -179 133 1 534 155 10 29 chr6 124004549 124004652 -65274902 + MLT1F LTR MaLR 439 539 -3 286 247 113 10 chr6 124004658 124004755 -65274799 + MLT1H LTR MaLR 50 156 -393 263 110 14 137 chr6 124004781 124004854 -65274700 + MLT1F1 LTR MaLR 244 307 -242 * 334 209 56 39 chr6 124004849 124005005 -65274549 + MLT1F1 LTR MaLR 422 587 -3 2243 103 7 7 chr6 124005993 124006303 -65273251 + AluSg SINE Alu 1 310 0 2224 88 0 3 chr6 124006725 124007064 -65272490 - AluSx SINE Alu 0 338 1 22 0 0 0 chr6 124007072 124007094 -65272460 + AT_rich Low_complexity Low_complexity 1 22 0 722 315 32 14 chr6 124007491 124007770 -65271784 + L2 LINE L2 2197 2480 -834 2344 98 10 0 chr6 124007890 124008197 -65271357 + AluSx SINE Alu 1 310 -2 1941 123 41 17 chr6 124008197 124008490 -65271064 + AluSx SINE Alu 5 304 -8 2355 86 0 10 chr6 124008505 124008807 -65270747 + AluSg SINE Alu 1 299 -11 441 306 138 54 chr6 124008809 124009152 -65270402 + L2 LINE L2 2776 3171 -142 2429 61 0 14 chr6 124009152 124009449 -65270105 - AluY SINE Alu -18 293 1 441 306 138 54 chr6 124009449 124009592 -65269962 + L2 LINE L2 3171 3301 -12 234 324 14 55 chr6 124009732 124009860 -65269694 + L1ME LINE L1 5523 5655 -466 2018 174 146 60 chr6 124009860 124010025 -65269529 + MLT1F LTR MaLR 1 150 -392 2022 115 69 3 chr6 124010025 124010313 -65269241 + AluSg SINE Alu 1 307 -3 285 51 0 0 chr6 124010313 124010352 -65269202 + (TA)n Simple_repeat Simple_repeat 1 39 0 2018 174 146 60 chr6 124010352 124010684 -65268870 + MLT1F LTR MaLR 149 542 0 234 324 14 55 chr6 124010684 124010700 -65268854 + L1ME LINE L1 5655 5661 -460 334 259 12 42 chr6 124011087 124011255 -65268299 - MLT1L LTR MaLR -347 268 18 1716 132 39 4 chr6 124011374 124011631 -65267923 - MER1B DNA MER1_type -73 266 1 1334 199 0 78 chr6 124011761 124011915 -65267639 - AluJo SINE Alu -29 283 119 207 0 0 0 chr6 124011915 124011938 -65267616 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1786 159 0 17 chr6 124011938 124012228 -65267326 - AluSx SINE Alu -27 285 1 1334 199 0 78 chr6 124012228 124012251 -65267303 - AluJo SINE Alu -192 120 97 1974 109 69 4 chr6 124012251 124012525 -65267029 + AluSg SINE Alu 5 296 -14 1334 199 0 78 chr6 124012525 124012652 -65266902 - AluJo SINE Alu -215 97 1 284 354 35 14 chr6 124012718 124012805 -65266749 + MIR SINE MIR 34 127 -135 2294 91 10 3 chr6 124012805 124013103 -65266451 - AluSx SINE Alu -12 300 1 284 354 35 14 chr6 124013103 124013159 -65266395 + MIR SINE MIR 127 180 -82 2521 71 0 0 chr6 124014106 124014415 -65265139 - AluY SINE Alu -2 309 1 189 182 0 0 chr6 124014933 124014988 -65264566 + (TA)n Simple_repeat Simple_repeat 1 55 0 327 288 76 34 chr6 124014995 124015113 -65264441 + L2 LINE L2 3150 3272 0 822 186 58 17 chr6 124015222 124015588 -65263966 - L1MB8 LINE L1 0 6178 5769 2290 104 3 0 chr6 124015889 124016188 -65263366 + AluSx SINE Alu 1 300 -12 2394 93 0 13 chr6 124016388 124016700 -65262854 - AluSq SINE Alu -5 308 1 767 244 131 64 chr6 124016796 124017243 -65262311 - L2 LINE L2 -8 3305 2662 2657 179 13 17 chr6 124017248 124017711 -65261843 - MER65C LTR ERV1 0 461 1 431 281 108 11 chr6 124017711 124017896 -65261658 - L1MB8 LINE L1 -427 5694 5492 1480 218 104 0 chr6 124017942 124018268 -65261286 - MLT1D LTR MaLR -120 385 26 482 247 109 141 chr6 124018403 124018971 -65260583 - L1MB8 LINE L1 -1148 4998 4414 2190 115 3 6 chr6 124018971 124019284 -65260270 - AluSx SINE Alu 0 312 1 482 247 109 141 chr6 124019284 124019314 -65260240 - L1MB8 LINE L1 -1732 4414 4385 1919 153 3 10 chr6 124019314 124019621 -65259933 - AluJb SINE Alu -7 305 1 482 247 109 141 chr6 124019621 124020068 -65259486 - L1MB8 LINE L1 -1761 4385 3983 948 198 0 6 chr6 124020068 124020230 -65259324 - FRAM SINE Alu -5 161 1 482 247 109 141 chr6 124020230 124020330 -65259224 - L1MB8 LINE L1 -2163 3983 3881 803 171 0 0 chr6 124020562 124020679 -65258875 + FLAM_A SINE Alu 4 120 -22 1335 144 67 22 chr6 124021001 124021085 -65258469 + MER33 DNA MER1_type 43 122 -2463 2309 35 46 3 chr6 124021085 124021367 -65258187 + AluY SINE Alu 1 294 -17 1335 144 67 22 chr6 124021367 124021552 -65258002 + MER33 DNA MER1_type 122 324 0 24 0 0 0 chr6 124021572 124021596 -65257958 + AT_rich Low_complexity Low_complexity 1 24 0 2136 116 13 0 chr6 124021691 124021993 -65257561 - AluSg SINE Alu 0 310 5 967 130 0 0 chr6 124022028 124022159 -65257395 + AluSq/x SINE Alu 3 133 -180 2010 148 0 3 chr6 124022167 124022457 -65257097 + AluJb SINE Alu 3 291 -21 1738 146 21 18 chr6 124022471 124022752 -65256802 - AluJo SINE Alu -30 282 1 2483 69 0 16 chr6 124023723 124024026 -65255528 - AluSg SINE Alu -12 298 1 34 0 0 0 chr6 124024184 124024218 -65255336 + AT_rich Low_complexity Low_complexity 1 34 0 1935 128 35 0 chr6 124024465 124024754 -65254800 - AluSx SINE Alu -13 299 1 824 124 53 0 chr6 124025762 124025875 -65253679 + AluJb SINE Alu 5 123 -189 180 0 0 0 chr6 124025893 124025913 -65253641 + (A)n Simple_repeat Simple_repeat 1 20 0 1115 272 68 67 chr6 124025952 124026611 -65252943 + HAL1 LINE L1 585 1244 -1263 1279 110 0 0 chr6 124026615 124026778 -65252776 + AluSx SINE Alu 1 163 -149 615 114 11 0 chr6 124026778 124026866 -65252688 + AluSp/q SINE Alu 212 300 -13 2087 123 9 25 chr6 124026872 124027189 -65252365 + AluSx SINE Alu 1 312 0 2294 101 7 3 chr6 124027190 124027497 -65252057 + AluSq SINE Alu 1 308 -5 21 0 0 0 chr6 124027545 124027566 -65251988 + AT_rich Low_complexity Low_complexity 1 21 0 2141 126 7 0 chr6 124027566 124027867 -65251687 + AluSx SINE Alu 1 303 -9 2357 85 0 0 chr6 124028184 124028479 -65251075 + AluY SINE Alu 1 295 -16 394 309 79 17 chr6 124028639 124028683 -65250871 + MIR3 SINE MIR 2 42 -166 1496 123 55 5 chr6 124028683 124028902 -65250652 - MER30 DNA MER1_type 0 230 1 394 309 79 17 chr6 124028902 124029035 -65250519 + MIR3 SINE MIR 42 190 -18 2239 94 0 14 chr6 124029104 124029401 -65250153 + AluSx SINE Alu 1 293 -19 202 292 78 65 chr6 124030732 124030886 -65248668 - L2 LINE L2 -176 3096 2941 2951 134 12 50 chr6 124031038 124031241 -65248313 + L1MB5 LINE L1 5679 5888 -286 2249 94 0 0 chr6 124031241 124031528 -65248026 + AluSc SINE Alu 7 293 -16 2951 134 12 50 chr6 124031528 124031840 -65247714 + L1MB5 LINE L1 5888 6174 0 287 25 25 0 chr6 124033053 124033093 -65246461 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1882 146 4 4 chr6 124033137 124033417 -65246137 + AluJo SINE Alu 1 280 -32 442 249 122 17 chr6 124033450 124033631 -65245923 + L1MC4 LINE L1 7809 8008 -34 216 0 0 0 chr6 124034061 124034085 -65245469 + (T)n Simple_repeat Simple_repeat 1 24 0 1923 142 7 0 chr6 124034511 124034793 -65244761 + AluSx SINE Alu 1 284 -28 258 271 60 46 chr6 124034934 124035085 -65244469 + MER5B DNA MER1_type 12 164 -14 237 259 74 37 chr6 124035018 124035099 -65244455 - MER5A DNA MER1_type -101 88 5 * 261 254 60 0 chr6 124035769 124035836 -65243718 - L2 LINE L2 -43 3270 3200 1790 155 7 14 chr6 124035881 124036159 -65243395 + AluJb SINE Alu 6 281 -31 574 229 23 8 chr6 124036195 124036326 -65243228 + L2 LINE L2 3179 3311 -2 1854 167 10 3 chr6 124036460 124036638 -65242916 - AluJb SINE Alu -10 302 120 366 23 0 0 chr6 124036638 124036681 -65242873 + (TTG)n Simple_repeat Simple_repeat 2 44 0 1854 167 10 3 chr6 124036681 124036802 -65242752 - AluJb SINE Alu -192 120 1 701 223 24 24 chr6 124037804 124037970 -65241584 - MER21B LTR ERV1 0 863 698 993 164 18 6 chr6 124037970 124038141 -65241413 - FAM SINE Alu -1 48 1 3474 153 47 100 chr6 124038142 124038885 -65240669 - MER21B LTR ERV1 -156 707 4 2313 94 3 0 chr6 124039616 124039914 -65239640 + AluSx SINE Alu 1 299 -13 1985 168 0 3 chr6 124039974 124040277 -65239277 - AluJb SINE Alu -10 302 1 2333 81 3 10 chr6 124040509 124040806 -65238748 - AluSx SINE Alu -17 295 1 325 228 103 53 chr6 124040816 124040992 -65238562 + L1MC5 LINE L1 7249 7410 -398 432 253 87 52 chr6 124041138 124041367 -65238187 + L1MC4 LINE L1 7608 7844 -198 539 281 35 50 chr6 124041806 124042005 -65237549 - L2 LINE L2 -5 3308 3113 272 265 0 135 chr6 124042136 124042306 -65237248 + MER5B DNA MER1_type 32 178 0 253 345 95 36 chr6 124042717 124042885 -65236669 - MER5B DNA MER1_type 0 178 1 1003 155 34 80 chr6 124043407 124043564 -65235990 - L1MC1 LINE L1 0 6333 6189 1813 180 3 3 chr6 124043564 124043859 -65235695 + AluJb SINE Alu 1 295 -17 1003 155 34 80 chr6 124043859 124043940 -65235614 - L1MC1 LINE L1 -144 6189 6106 2538 45 0 0 chr6 124044285 124044575 -65234979 + AluY SINE Alu 1 290 -21 698 312 64 67 chr6 124044731 124045061 -65234493 + L2 LINE L2 2926 3254 -18 1140 144 8 111 chr6 124045373 124045616 -65233938 - AluJo SINE Alu -11 301 84 231 114 68 0 chr6 124045795 124045839 -65233715 - MSTB LTR MaLR 0 426 380 2138 133 3 0 chr6 124045839 124046141 -65233413 + AluSx SINE Alu 1 303 -9 1384 178 14 0 chr6 124046161 124046380 -65233174 + AluJb SINE Alu 31 252 -60 893 186 6 41 chr6 124046402 124046574 -65232980 + FRAM SINE Alu 1 166 -10 1851 152 77 6 chr6 124046574 124046910 -65232644 - MSTB LTR MaLR -64 362 3 207 221 21 116 chr6 124046913 124047008 -65232546 + MIR3 SINE MIR 101 186 -22 23 0 0 0 chr6 124047060 124047083 -65232471 + AT_rich Low_complexity Low_complexity 1 23 0 1902 161 0 7 chr6 124047083 124047381 -65232173 - AluSx SINE Alu -16 296 1 402 243 155 50 chr6 124047467 124047706 -65231848 + L2 LINE L2 3046 3309 -4 2464 81 3 0 chr6 124047796 124048093 -65231461 - AluSp SINE Alu -15 298 1 2589 70 6 15 chr6 124048666 124048996 -65230558 + L1PA8A LINE L1 5805 6131 0 677 127 85 0 chr6 124249717 124249835 -65029719 - Tigger1 DNA MER2_type -2155 263 136 869 133 27 20 chr6 124249838 124249988 -65029566 + AluJb SINE Alu 133 283 -29 804 219 0 20 chr6 124250013 124250164 -65029390 + AluJo SINE Alu 6 153 -159 2230 91 4 0 chr6 124250386 124250662 -65028892 + AluSp SINE Alu 2 278 -35 641 171 21 36 chr6 124250854 124250994 -65028560 + AluSg/x SINE Alu 164 301 -9 682 177 89 32 chr6 124251013 124251137 -65028417 - FLAM_A SINE Alu -2 131 1 598 175 80 15 chr6 124251166 124251303 -65028251 + MER31-int LTR ERV1 3519 3664 -1272 1292 200 9 0 chr6 124251303 124251533 -65028021 - AluJb SINE Alu -29 283 52 5261 58 0 0 chr6 124251534 124252143 -65027411 + L1PA6 LINE L1 5545 6153 -1 500 121 0 0 chr6 124252161 124252227 -65027327 - AluJb SINE Alu -246 66 1 2337 103 3 0 chr6 124252731 124253032 -65026522 - AluSq SINE Alu -11 302 1 366 219 0 0 chr6 124253034 124253107 -65026447 + Charlie5 DNA MER1_type 2552 2624 0 203 250 23 0 chr6 124253315 124253359 -65026195 + G-rich Low_complexity Low_complexity 4 48 0 22 35 0 0 chr6 124253978 124254007 -65025547 + AT_rich Low_complexity Low_complexity 1 29 0 300 216 158 16 chr6 124254224 124254414 -65025140 - L1ME4a LINE L1 -11 6110 5894 22 0 0 0 chr6 124255123 124255145 -65024409 + AT_rich Low_complexity Low_complexity 1 22 0 1344 107 10 10 chr6 124255245 124255441 -65024113 + AluSc SINE Alu 106 301 -8 1945 151 38 28 chr6 124255441 124255839 -65023715 + L1PBa LINE L1 1954 2355 -4508 2201 111 3 0 chr6 124255841 124256129 -65023425 + AluSq SINE Alu 1 289 -24 297 212 0 0 chr6 124256140 124256206 -65023348 + L1 LINE L1 2264 2329 -3817 2167 114 100 17 chr6 124256210 124256571 -65022983 + L1PBa LINE L1 3 393 -6470 * 2709 153 47 0 chr6 124256568 124257014 -65022540 + L1PBa LINE L1 603 1069 -5794 * 3710 254 25 85 chr6 124257010 124257960 -65021594 + L1PBa LINE L1 2607 3405 -3457 1895 138 0 0 chr6 124257960 124258221 -65021333 + AluSq SINE Alu 1 261 -52 3710 254 25 85 chr6 124258221 124259027 -65020527 + L1PBa LINE L1 3405 4258 -2604 302 161 71 0 chr6 124259128 124259184 -65020370 - MSTC LTR MaLR -368 60 1 2153 157 71 25 chr6 124259221 124259302 -65020252 - MSTB LTR MaLR 0 426 350 2020 150 56 14 chr6 124259302 124259662 -65019892 - THE1C LTR MaLR 0 375 1 2153 157 71 25 chr6 124259662 124259987 -65019567 - MSTB LTR MaLR -76 350 1 891 307 60 10 chr6 124259989 124260373 -65019181 + MLT1L LTR MaLR 202 604 -11 636 189 65 32 chr6 124261104 124261289 -65018265 - MER20B DNA MER1_type 0 783 593 480 203 0 0 chr6 124261340 124261419 -65018135 - Tigger5 DNA MER2_type -2243 80 2 339 224 40 26 chr6 124261486 124261562 -65017992 - MER20B DNA MER1_type -300 483 407 1025 267 86 29 chr6 124261603 124261977 -65017577 - MER20B DNA MER1_type -365 418 24 568 200 187 7 chr6 124262353 124262503 -65017051 - L1M4b LINE L1 -5222 1637 1461 241 322 89 0 chr6 124263515 124263605 -65015949 + L2 LINE L2 3171 3268 -4 2301 112 0 16 chr6 124263887 124264199 -65015355 + AluSx SINE Alu 1 307 -5 695 188 19 62 chr6 124264302 124264432 -65015122 - MER3 DNA MER1_type -9 153 30 3865 146 55 35 chr6 124264432 124265144 -65014410 - LTR8A LTR ERV1 -1 726 1 695 188 19 62 chr6 124265144 124265173 -65014381 - MER3 DNA MER1_type -132 30 1 1389 179 103 19 chr6 124265794 124266208 -65013346 - LTR54 LTR ERV1 -8 395 1 1465 209 63 18 chr6 124266212 124266547 -65013007 - LTR49-int LTR ERV1 -395 7142 6793 * 2858 221 33 21 chr6 124266533 124266636 -65012918 - LTR49-int LTR ERV1 -211 4725 4625 1206 202 113 57 chr6 124266636 124266918 -65012636 - AluJb SINE Alu -3 299 2 2858 221 33 21 chr6 124266918 124267474 -65012080 - LTR49-int LTR ERV1 -311 4625 4058 2488 173 9 12 chr6 124267478 124267900 -65011654 - MSTB LTR MaLR -5 421 1 408 190 74 74 chr6 124267900 124268021 -65011533 - LTR49-int LTR ERV1 -966 5365 5245 2903 7 0 0 chr6 124268278 124268588 -65010966 - AluYa5 SINE Alu -1 310 1 507 214 0 43 chr6 124268989 124269129 -65010425 - L1ME4a LINE L1 -39 6082 5949 306 314 16 33 chr6 124269925 124270046 -65009508 - MIR3 SINE MIR -80 128 10 1985 117 0 0 chr6 124270154 124270411 -65009143 - AluSx SINE Alu -20 292 36 571 236 42 26 chr6 124270943 124271134 -65008420 - L1MC4a LINE L1 -1779 6029 5836 30 27 0 0 chr6 124271186 124271223 -65008331 + AT_rich Low_complexity Low_complexity 1 37 0 2910 171 14 54 chr6 124271265 124271892 -65007662 - L1MB3 LINE L1 -3 6180 5579 300 179 30 30 chr6 124271921 124271988 -65007566 - FLAM SINE Alu -8 125 59 * 412 172 0 0 chr6 124271960 124272024 -65007530 - Tigger1 DNA MER2_type -2072 346 283 31 44 0 0 chr6 124272081 124272126 -65007428 + AT_rich Low_complexity Low_complexity 1 45 0 623 138 0 11 chr6 124272176 124272263 -65007291 - AluJ/FLAM SINE Alu -225 87 2 15370 126 28 17 chr6 124272305 124272989 -65006565 + Tigger1 DNA MER2_type 38 713 -1705 2222 116 0 3 chr6 124272989 124273292 -65006262 + AluSg SINE Alu 1 302 -8 15370 126 28 17 chr6 124273292 124273714 -65005840 + Tigger1 DNA MER2_type 713 1129 -1289 2466 88 3 0 chr6 124273714 124274022 -65005532 + AluSp SINE Alu 1 309 -4 15370 126 28 17 chr6 124274022 124275268 -65004286 + Tigger1 DNA MER2_type 1129 2418 0 2452 71 0 10 chr6 124275651 124275959 -65003595 + AluY SINE Alu 1 305 -6 489 138 0 0 chr6 124276229 124276294 -65003260 - AluJ/FRAM SINE Alu -22 290 226 1375 202 80 28 chr6 124276617 124276969 -65002585 + MLT1A2 LTR MaLR 1 370 -4 2033 155 147 5 chr6 124277011 124277386 -65002168 + MSTA LTR MaLR 1 428 0 915 196 7 0 chr6 124278332 124278480 -65001074 + FRAM SINE Alu 1 149 -17 4776 218 71 23 chr6 124278683 124279873 -64999681 - L1ME2 LINE L1 -9 6155 5024 2942 123 49 2 chr6 124279873 124280280 -64999274 - MSTB LTR MaLR 0 426 1 4776 218 71 23 chr6 124280280 124280398 -64999156 - L1ME2 LINE L1 -1140 5024 4913 1810 169 0 7 chr6 124280398 124280719 -64998835 - AluJb SINE Alu 0 319 1 4776 218 71 23 chr6 124280719 124281314 -64998240 - L1ME2 LINE L1 -1251 4913 4348 207 0 0 0 chr6 124281314 124281337 -64998217 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4776 218 71 23 chr6 124281337 124281475 -64998079 - L1ME2 LINE L1 -1816 4348 4218 2496 80 0 0 chr6 124281475 124281777 -64997777 + AluSg SINE Alu 1 302 -8 4776 218 71 23 chr6 124281777 124281971 -64997583 - L1ME2 LINE L1 -1946 4218 3815 264 211 0 14 chr6 124281984 124282055 -64997499 + MLT1C LTR MaLR 200 269 -198 429 191 73 27 chr6 124282148 124282258 -64997296 - MIR SINE MIR -10 252 138 31 0 0 0 chr6 124282327 124282358 -64997196 + AT_rich Low_complexity Low_complexity 1 31 0 928 188 0 12 chr6 124282365 124282535 -64997019 - AluJo SINE Alu -24 288 121 7616 35 0 0 chr6 124282536 124283421 -64996133 - L1PA5 LINE L1 -16 6138 5254 870 147 28 0 chr6 124283422 124283565 -64995989 + MER5A DNA MER1_type 43 189 0 364 275 32 15 chr6 124283578 124283737 -64995817 - L1ME LINE L1 -525 5596 5436 2475 134 25 40 chr6 124284144 124284450 -64995104 - MSTD LTR MaLR 0 396 96 2640 36 0 7 chr6 124284450 124284756 -64994798 - AluY SINE Alu -7 304 1 2475 134 25 40 chr6 124284756 124284851 -64994703 - MSTD LTR MaLR -300 96 1 482 247 105 68 chr6 124285144 124285363 -64994191 + MIR SINE MIR 25 251 -11 2068 99 0 74 chr6 124286819 124287142 -64992412 - AluSx SINE Alu -13 299 1 185 282 13 64 chr6 124287245 124287323 -64992231 + L2 LINE L2 3149 3222 -50 1763 147 24 14 chr6 124288053 124288346 -64991208 + AluJo SINE Alu 1 296 -16 343 254 79 89 chr6 124288447 124288727 -64990827 + L1ME4a LINE L1 5827 6103 -18 361 238 150 6 chr6 124289015 124289186 -64990368 - L1MC4a LINE L1 -340 5822 5732 198 103 0 0 chr6 124289186 124289215 -64990339 + (TA)n Simple_repeat Simple_repeat 1 29 0 286 253 0 11 chr6 124289222 124289313 -64990241 - L1MC4 LINE L1 -1339 6703 6614 240 271 65 0 chr6 124289289 124289396 -64990158 + L1MC4 LINE L1 6614 6727 -1315 * 703 290 20 31 chr6 124289378 124289633 -64989921 - L1MC4a LINE L1 -436 5726 5475 1154 195 136 84 chr6 124293196 124293601 -64985953 - MER31B LTR ERV1 0 466 41 869 161 65 0 chr6 124293596 124293764 -64985790 + MER83B LTR ERV1 170 348 -30 * 252 122 0 41 chr6 124293758 124293807 -64985747 - MER31B LTR ERV1 -419 47 1 * 615 94 0 12 chr6 124294072 124294157 -64985397 - LTR49 LTR ERV1 -2 593 510 1840 120 177 0 chr6 124294157 124294473 -64985081 - MER83B LTR ERV1 0 378 7 2713 109 7 34 chr6 124294490 124294683 -64984871 - MER41E LTR ERV1 0 512 315 2243 106 3 0 chr6 124294683 124294976 -64984578 + AluSx SINE Alu 1 294 -18 2713 109 7 34 chr6 124294976 124295194 -64984360 - MER41E LTR ERV1 -197 315 112 1645 139 20 104 chr6 124295230 124295410 -64984144 - AluYb8 SINE Alu -1 317 178 387 0 0 0 chr6 124295410 124295453 -64984101 + (TG)n Simple_repeat Simple_repeat 2 44 0 1645 139 20 104 chr6 124295453 124295618 -64983936 - AluYb8 SINE Alu -140 178 1 3136 123 42 2 chr6 124295619 124296100 -64983454 - MER39B LTR ERV1 -153 500 1 2300 111 0 3 chr6 124296428 124296734 -64982820 - AluSx SINE Alu -7 305 1 3581 139 79 40 chr6 124296901 124297601 -64981953 - LTR8A LTR ERV1 0 727 1 186 167 24 0 chr6 124298026 124298068 -64981486 - L2 LINE L2 -1607 1707 1665 1450 157 4 33 chr6 124299615 124299857 -64979697 - AluJb SINE Alu -76 236 2 384 191 150 104 chr6 124299980 124300051 -64979503 + MER5A DNA MER1_type 9 75 -114 2317 96 0 16 chr6 124300051 124300363 -64979191 + AluSx SINE Alu 1 307 -5 384 191 150 104 chr6 124300363 124300464 -64979090 + MER5A DNA MER1_type 75 189 0 907 136 15 0 chr6 124301185 124301317 -64978237 - AluJo SINE Alu -178 134 1 208 0 0 0 chr6 124301337 124301360 -64978194 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1174 179 10 86 chr6 124301360 124301651 -64977903 - AluJo SINE Alu -26 286 17 356 280 176 6 chr6 124301771 124301953 -64977601 - MIR SINE MIR -43 219 7 395 71 40 0 chr6 124302385 124302457 -64977097 + AluSc SINE Alu 174 226 -73 377 164 0 0 chr6 124303087 124303148 -64976406 - MLT1F LTR MaLR 0 567 507 1845 185 107 39 chr6 124303697 124304108 -64975446 - MLT1F LTR MaLR -94 448 10 527 307 101 4 chr6 124304212 124304469 -64975085 + L2 LINE L2 3027 3308 -5 1079 163 0 0 chr6 124304744 124304916 -64974638 - FRAM SINE Alu -5 171 1 220 222 97 28 chr6 124305373 124305445 -64974109 - L2 LINE L2 -12 3260 3184 234 320 0 0 chr6 124305458 124305536 -64974018 + L1MC/D LINE L1 5853 5930 -1878 24 53 0 0 chr6 124305651 124305689 -64973865 + AT_rich Low_complexity Low_complexity 1 38 0 2271 98 0 7 chr6 124305944 124306240 -64973314 + AluSg SINE Alu 1 294 -16 863 291 13 20 chr6 124306310 124306580 -64972974 - MLT1H1 LTR MaLR -281 314 1 2121 131 0 0 chr6 124307726 124308033 -64971521 - AluSx SINE Alu 0 307 1 523 281 120 0 chr6 124309222 124309439 -64970115 + MIR SINE MIR 6 248 -14 1697 81 32 0 chr6 124309479 124309700 -64969854 - MER30 DNA MER1_type 0 230 3 208 304 14 0 chr6 124311237 124311306 -64968248 + MIR3 SINE MIR 108 177 -31 192 318 24 12 chr6 124311700 124311785 -64967769 + MIR3 SINE MIR 120 205 -3 2180 223 45 95 chr6 124311816 124312391 -64967163 + L1MEc LINE L1 89 691 -5705 563 165 8 83 chr6 124312391 124312512 -64967042 + FLAM_A SINE Alu 5 116 -17 2180 223 45 95 chr6 124312512 124312542 -64967012 + L1MEc LINE L1 691 721 -5675 2009 115 7 0 chr6 124312542 124312855 -64966699 + AluSp SINE Alu 1 315 0 2180 223 45 95 chr6 124312855 124312955 -64966599 + L1MEc LINE L1 721 762 -5634 1986 146 0 13 chr6 124312955 124313263 -64966291 + AluSx SINE Alu 1 304 -8 2180 223 45 95 chr6 124313263 124313291 -64966263 + L1MEc LINE L1 762 790 -5606 862 245 19 118 chr6 124313281 124313762 -64965792 + L1MEc LINE L1 1363 1795 -4601 * 223 178 0 0 chr6 124314963 124315008 -64964546 + A-rich Low_complexity Low_complexity 1 45 0 322 190 91 58 chr6 124315509 124315630 -64963924 - L1ME4a LINE L1 -18 6103 5979 222 91 0 0 chr6 124315647 124315680 -64963874 + (TA)n Simple_repeat Simple_repeat 1 33 0 353 259 45 9 chr6 124315716 124315828 -64963726 - L1ME4a LINE L1 -371 5750 5635 467 267 145 47 chr6 124316162 124316506 -64963048 - MLT1K LTR MaLR -175 413 36 21 0 0 0 chr6 124316629 124316650 -64962904 + AT_rich Low_complexity Low_complexity 1 21 0 2104 120 3 14 chr6 124316844 124317196 -64962358 + AluSx SINE Alu 1 349 0 367 327 52 9 chr6 124317203 124317414 -64962140 - MIR SINE MIR -13 249 30 1670 151 0 60 chr6 124318494 124318838 -64960716 - AluJb SINE Alu 0 326 1 404 319 21 16 chr6 124319066 124319257 -64960297 - L2 LINE L2 -873 2441 2250 1609 147 36 62 chr6 124319397 124319703 -64959851 + AluJb SINE Alu 1 298 -14 250 151 94 0 chr6 124319844 124319897 -64959657 + L1MB3 LINE L1 6103 6160 -23 1268 211 140 40 chr6 124320303 124320759 -64958795 + MLT1D LTR MaLR 2 503 -2 297 247 31 0 chr6 124322579 124322676 -64956878 + LTR33 LTR ERVL 72 171 -350 346 209 66 11 chr6 124322834 124322925 -64956629 + LTR33 LTR ERVL 422 517 -4 849 198 43 0 chr6 124324257 124324444 -64955110 - MIR SINE MIR -3 259 65 5821 160 19 5 chr6 124324674 124326669 -64952885 + L1PA16 LINE L1 4114 6166 0 22 70 0 0 chr6 124326669 124326712 -64952842 + AT_rich Low_complexity Low_complexity 1 43 0 1082 246 196 59 chr6 124326925 124327588 -64951966 + LTR41 LTR ERVL 1 754 -19 3779 108 40 32 chr6 124328806 124329438 -64950116 + MER34-int LTR ERV1 5690 6326 -5 304 293 0 3 chr6 124329440 124329535 -64950019 + MER34 LTR ERV1 14 96 -446 2541 138 20 0 chr6 124329559 124329951 -64949603 + LTR29 LTR ERV1 160 559 -63 2017 123 11 0 chr6 124329957 124330241 -64949313 - AluSx SINE Alu -25 287 1 1187 242 77 77 chr6 124330268 124330508 -64949046 - L1MEd LINE L1 -901 1589 1351 3084 167 48 95 chr6 124330508 124331231 -64948323 - LTR8 LTR ERV1 0 691 3 1187 242 77 77 chr6 124331231 124331901 -64947653 - L1MEd LINE L1 -1139 1351 586 1780 166 0 26 chr6 124334169 124334471 -64945083 - AluJb SINE Alu -15 297 4 3830 134 53 46 chr6 124334525 124335246 -64944308 + LTR8A LTR ERV1 2 727 0 283 220 0 17 chr6 124335590 124335649 -64943905 - MER103 DNA DNA -71 95 38 1894 161 48 17 chr6 124336511 124336865 -64942689 - MLT1A1 LTR MaLR 0 365 1 254 307 22 6 chr6 124337970 124338094 -64941460 - MIR SINE MIR -75 133 10 2618 46 0 3 chr6 124338289 124338592 -64940962 - AluY SINE Alu -9 302 1 834 266 118 33 chr6 124338709 124338980 -64940574 + MLT1E LTR MaLR 77 370 -223 1119 178 23 164 chr6 124339028 124339096 -64940458 - L1M4 LINE L1 -1094 5052 4976 1935 166 0 3 chr6 124339096 124339403 -64940151 - AluSx SINE Alu -6 306 1 1119 178 23 164 chr6 124339403 124339581 -64939973 - L1M4 LINE L1 -1170 4976 4775 2180 133 17 8 chr6 124339581 124339933 -64939621 - THE1A LTR MaLR 0 355 1 1119 178 23 164 chr6 124339933 124339974 -64939580 - L1M4 LINE L1 -1371 4775 4730 1564 149 0 0 chr6 124339974 124340202 -64939352 - AluSx SINE Alu -84 228 1 1119 178 23 164 chr6 124340202 124340394 -64939160 - L1M4 LINE L1 -1416 4730 4639 298 259 0 12 chr6 124340852 124340937 -64938617 - L1MEd LINE L1 -6035 84 1 24 0 0 0 chr6 124341494 124341518 -64938036 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr6 124341798 124341821 -64937733 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 872 176 0 0 chr6 124341825 124341961 -64937593 - FRAM SINE Alu -36 140 5 2043 138 131 13 chr6 124341999 124342382 -64937172 - MSTA LTR MaLR 0 428 1 262 191 0 0 chr6 124342444 124342491 -64937063 + L1MC4 LINE L1 6658 6704 -1338 379 277 51 27 chr6 124342579 124342835 -64936719 - L1ME4a LINE L1 -104 6017 5756 302 246 187 8 chr6 124342915 124343043 -64936511 - L1ME LINE L1 -344 5822 5669 1705 251 260 39 chr6 124343072 124343781 -64935773 - L2 LINE L2 -614 2700 2149 2510 71 0 0 chr6 124343781 124344076 -64935478 + AluSg SINE Alu 1 295 -15 1705 251 260 39 chr6 124344076 124344468 -64935086 - L2 LINE L2 -1165 2149 1355 271 294 64 9 chr6 124346092 124346201 -64933353 - MLT1K LTR MaLR -42 546 432 252 232 0 80 chr6 124346193 124346305 -64933249 + MER69 DNA AcHobo 2269 2371 -155 * 30 45 0 0 chr6 124346399 124346443 -64933111 + AT_rich Low_complexity Low_complexity 1 44 0 1766 171 3 3 chr6 124346443 124346735 -64932819 - AluJb SINE Alu -20 292 1 597 108 23 93 chr6 124346742 124346811 -64932743 - L1MA8 LINE L1 -3 6288 6231 2167 122 3 3 chr6 124346811 124347122 -64932432 + AluSx SINE Alu 1 311 -1 597 108 23 93 chr6 124347122 124347181 -64932373 - L1MA8 LINE L1 -60 6231 6169 665 158 171 0 chr6 124347182 124347328 -64932226 + MER69 DNA AcHobo 2356 2526 0 1258 163 4 98 chr6 124347632 124347896 -64931658 + MER8 DNA MER2_type 1 239 0 180 257 29 14 chr6 124348688 124348758 -64930796 + MIR3 SINE MIR 138 208 0 26 30 0 0 chr6 124349117 124349150 -64930404 + AT_rich Low_complexity Low_complexity 1 33 0 2007 157 13 0 chr6 124349150 124349450 -64930104 + AluSx SINE Alu 1 304 -8 547 250 22 39 chr6 124349530 124349710 -64929844 - L1ME4a LINE L1 -293 5828 5652 21 57 0 0 chr6 124349753 124349788 -64929766 + AT_rich Low_complexity Low_complexity 1 35 0 440 322 89 38 chr6 124349905 124350132 -64929422 + L1MC4a LINE L1 3590 3804 -2342 2241 112 7 7 chr6 124350132 124350437 -64929117 - AluSq SINE Alu -8 305 1 440 322 89 38 chr6 124350437 124350784 -64928770 + L1MC4a LINE L1 3804 4193 -1953 421 192 92 6 chr6 124350785 124351009 -64928545 + AluJ SINE Alu 2 293 -19 2132 134 7 0 chr6 124351143 124351434 -64928120 - AluSx SINE Alu -19 293 1 1099 265 97 47 chr6 124351957 124352957 -64926597 + L1MC4a LINE L1 4946 5398 -748 1244 197 122 49 chr6 124352967 124353129 -64926425 - MLT1A2 LTR MaLR -4 370 221 1139 84 0 6 chr6 124353129 124353308 -64926246 + (TTC)n Simple_repeat Simple_repeat 3 180 0 1244 197 122 49 chr6 124353308 124353324 -64926230 - MLT1A2 LTR MaLR -153 221 208 2110 120 0 10 chr6 124353324 124353624 -64925930 - AluSx SINE Alu -15 297 1 1244 197 122 49 chr6 124353624 124353789 -64925765 - MLT1A2 LTR MaLR -166 208 1 255 231 0 0 chr6 124353898 124353950 -64925604 - MER21B LTR ERV1 -112 751 700 636 157 74 9 chr6 124353956 124354064 -64925490 - LTR35 LTR ERV1 0 618 504 180 0 0 0 chr6 124354065 124354085 -64925469 + (GA)n Simple_repeat Simple_repeat 1 20 0 1619 112 9 4 chr6 124354087 124354320 -64925234 - LTR35 LTR ERV1 -220 398 165 2014 253 54 36 chr6 124354355 124354457 -64925097 - MER21B LTR ERV1 -166 697 598 2215 96 32 0 chr6 124354457 124354739 -64924815 - AluSg SINE Alu -19 291 1 2014 253 54 36 chr6 124354739 124355225 -64924329 - MER21B LTR ERV1 -265 598 98 394 211 0 13 chr6 124355282 124355358 -64924196 - MER21B LTR ERV1 -776 87 13 4211 142 9 0 chr6 124355378 124356007 -64923547 - MER41B LTR ERV1 0 635 1 213 65 0 0 chr6 124356037 124356068 -64923486 + (CA)n Simple_repeat Simple_repeat 2 32 0 191 247 143 13 chr6 124356104 124356181 -64923373 - MIR SINE MIR -86 122 36 3568 116 11 1 chr6 124356573 124357331 -64922223 - LTR1B LTR ERV1 0 826 1 2568 149 22 38 chr6 124357439 124357633 -64921921 - MER4E LTR ERV1 -1 765 569 2220 105 20 7 chr6 124357633 124357939 -64921615 + AluSx SINE Alu 1 310 -2 2568 149 22 38 chr6 124357939 124358352 -64921202 - MER4E LTR ERV1 -197 569 1 675 186 0 0 chr6 124358397 124358510 -64921044 + FLAM_C SINE Alu 5 117 -16 369 0 0 0 chr6 124358510 124358551 -64921003 + (CA)n Simple_repeat Simple_repeat 2 42 0 703 242 0 0 chr6 124358562 124358690 -64920864 - FLAM_A SINE Alu -9 133 6 210 208 14 83 chr6 124358697 124358769 -64920785 + MIR3 SINE MIR 120 186 -22 961 179 108 119 chr6 124358910 124359279 -64920275 - MLT1A1 LTR MaLR 0 365 1 265 348 104 19 chr6 124359343 124359613 -64919941 - L2 LINE L2 -13 3259 2967 3537 126 6 4 chr6 124359752 124360262 -64919292 - MER9 LTR ERVK 0 511 1 52374 24 8 1 chr6 124360262 124366137 -64913417 - HERVK9 LTR ERVK 0 5916 1 3769 98 4 4 chr6 124366137 124366647 -64912907 - MER9 LTR ERVK 0 511 2 237 194 164 0 chr6 124366680 124366747 -64912807 - MLT1J LTR MaLR -144 367 290 267 79 0 0 chr6 124367221 124367259 -64912295 + (CA)n Simple_repeat Simple_repeat 2 39 0 255 228 35 0 chr6 124368190 124368247 -64911307 + MLT1K LTR MaLR 142 200 -388 2229 128 0 0 chr6 124368370 124368682 -64910872 - AluSx SINE Alu 0 312 1 486 185 62 97 chr6 124368748 124368943 -64910611 + MLT1K LTR MaLR 383 570 -18 2732 115 22 38 chr6 124368956 124369019 -64910535 - MER83 LTR ERV1 0 448 386 2253 97 7 0 chr6 124369019 124369319 -64910235 + AluSp SINE Alu 1 302 -11 2732 115 22 38 chr6 124369319 124369708 -64909846 - MER83 LTR ERV1 -62 386 3 477 228 80 0 chr6 124369733 124369895 -64909659 - MIR SINE MIR -71 191 17 249 300 50 33 chr6 124370030 124370150 -64909404 + L2 LINE L2 2928 3049 -223 485 298 34 19 chr6 124370377 124370582 -64908972 + MIR SINE MIR 22 229 -33 290 200 17 92 chr6 124371160 124371280 -64908274 + LTR33A LTR ERVL 413 523 0 595 170 20 0 chr6 124371323 124371423 -64908131 + FRAM SINE Alu 4 105 -71 2066 216 106 42 chr6 124371423 124371869 -64907685 - MER50 LTR ERV1 0 734 229 2219 93 3 35 chr6 124371869 124372179 -64907375 - AluSp SINE Alu -13 300 1 2066 216 106 42 chr6 124372179 124372414 -64907140 - MER50 LTR ERV1 -505 229 10 263 125 0 141 chr6 124372420 124372484 -64907070 + Alu SINE Alu 237 291 -10 205 355 50 20 chr6 124372759 124372959 -64906595 - L2 LINE L2 -240 3032 2827 1838 183 64 44 chr6 124373165 124373618 -64905936 + MER110A LTR ERV1 1 462 -6 1305 192 81 147 chr6 124373627 124374334 -64905220 + LTR8A LTR ERV1 1 527 -76 1789 124 12 0 chr6 124374356 124374606 -64904948 + AluSx SINE Alu 58 310 -2 1861 162 34 26 chr6 124374621 124375082 -64904472 - MER41A-int LTR ERV1 -1613 4333 4028 1430 79 0 5 chr6 124375082 124375284 -64904270 - MER41A-int LTR ERV1 -2884 3062 2862 * 1622 118 0 8 chr6 124375278 124375516 -64904038 - MER41A-int LTR ERV1 -4521 3016 2781 2532 137 13 3 chr6 124375518 124375906 -64903648 - MER41A-int LTR ERV1 -4928 2609 2218 * 5655 118 32 5 chr6 124375897 124377224 -64902330 - MER41A-int LTR ERV1 -4495 1451 2 4015 104 11 0 chr6 124377225 124377773 -64901781 - MER41A LTR ERV1 0 554 1 895 157 0 15 chr6 124377774 124377908 -64901646 - FLAM_C SINE Alu -11 132 1 280 211 0 78 chr6 124377909 124377999 -64901555 + LTR26E LTR ERV1 540 622 0 783 142 0 17 chr6 124378057 124378177 -64901377 + FLAM_A SINE Alu 1 118 -15 2360 109 0 10 chr6 124378241 124378553 -64901001 + AluSg SINE Alu 1 309 -1 754 252 257 34 chr6 124379712 124380591 -64898963 - L2 LINE L2 0 3313 2200 866 228 103 5 chr6 124380596 124380780 -64898774 - MER58A DNA MER1_type -16 208 7 396 282 112 0 chr6 124380785 124380973 -64898581 - L2 LINE L2 -1116 2198 1990 591 161 112 0 chr6 124381041 124381184 -64898370 + LTR37A LTR ERV1 39 197 -229 7301 157 9 10 chr6 124381242 124382127 -64897427 - Tigger3b DNA MER2_type -1798 1230 345 2388 78 7 0 chr6 124382127 124382423 -64897131 - AluSp SINE Alu -15 298 1 7301 157 9 10 chr6 124382423 124382768 -64896786 - Tigger3b DNA MER2_type -2683 345 1 728 184 54 11 chr6 124382768 124382953 -64896601 + LTR37A LTR ERV1 234 426 0 345 289 70 0 chr6 124382957 124383071 -64896483 - L2 LINE L2 -1357 1957 1836 520 233 84 45 chr6 124383075 124383321 -64896233 + L1ME3 LINE L1 4747 5006 -1140 2809 130 17 2 chr6 124383321 124383743 -64895811 + MSTA LTR MaLR 1 428 0 1430 270 58 34 chr6 124383744 124384599 -64894955 + L1ME3 LINE L1 5034 5905 -257 335 175 88 0 chr6 124384608 124384688 -64894866 - L1M4 LINE L1 -1683 4463 4377 877 153 0 22 chr6 124384691 124384828 -64894726 + AluJo SINE Alu 1 134 -178 1576 163 3 86 chr6 124384828 124385166 -64894388 + AluJo SINE Alu 1 310 -2 3556 237 35 14 chr6 124385178 124385997 -64893557 - L1M4 LINE L1 -1778 4368 3567 2052 159 0 6 chr6 124385997 124386311 -64893243 - AluJb SINE Alu 0 312 1 3556 237 35 14 chr6 124386311 124386338 -64893216 - L1M4 LINE L1 -2579 3567 3542 2486 148 41 7 chr6 124386338 124386750 -64892804 - MSTB LTR MaLR 0 426 1 3556 237 35 14 chr6 124386750 124386878 -64892676 - L1M4 LINE L1 -2604 3542 3373 188 291 38 13 chr6 124387589 124387668 -64891886 - L2 LINE L2 -45 3227 3147 2208 66 19 0 chr6 124387933 124388204 -64891350 + AluY SINE Alu 36 311 0 874 121 7 14 chr6 124388277 124388417 -64891137 - FLAM_C SINE Alu -4 139 1 2479 61 3 0 chr6 124388426 124388720 -64890834 - AluSp SINE Alu -18 295 1 260 317 56 14 chr6 124389789 124389931 -64889623 - MIR SINE MIR -12 250 103 21 0 0 0 chr6 124389999 124390020 -64889534 + AT_rich Low_complexity Low_complexity 1 21 0 195 241 161 11 chr6 124390129 124390216 -64889338 + MIR SINE MIR 48 147 -115 430 241 123 36 chr6 124390367 124390587 -64888967 - MIR SINE MIR -15 247 9 416 291 113 0 chr6 124390666 124390807 -64888747 + MIR SINE MIR 2 158 -104 509 94 0 0 chr6 124391503 124391567 -64887987 - MER1B DNA MER1_type 0 333 270 2267 109 6 21 chr6 124391567 124391905 -64887649 - MER1B DNA MER1_type -3 334 2 2420 90 0 3 chr6 124391996 124392329 -64887225 + AluY SINE Alu 1 332 0 698 175 181 0 chr6 124392694 124392865 -64886689 - MIR SINE MIR -51 211 10 250 320 10 0 chr6 124393719 124393819 -64885735 - L2 LINE L2 -954 2360 2260 456 204 28 9 chr6 124393979 124394087 -64885467 - L1ME3A LINE L1 -5 6165 6056 227 363 99 11 chr6 124394170 124394200 -64885354 - L1M3 LINE L1 -255 5928 5899 860 267 115 17 chr6 124394200 124394401 -64885153 - L1ME3A LINE L1 -280 5890 5710 2099 147 32 18 chr6 124394401 124394741 -64884813 - MER7A DNA MER2_type -2 344 2 860 267 115 17 chr6 124394741 124394887 -64884667 - L1ME3A LINE L1 -460 5710 5509 247 337 0 11 chr6 124394975 124395064 -64884490 + MER5A DNA MER1_type 35 122 -67 189 213 0 0 chr6 124395136 124395183 -64884371 + GA-rich Low_complexity Low_complexity 2 48 0 340 200 40 0 chr6 124395827 124395902 -64883652 - L1M3 LINE L1 -2028 5780 5703 21 0 0 0 chr6 124395902 124395923 -64883631 + AT_rich Low_complexity Low_complexity 1 21 0 1709 112 22 83 chr6 124396260 124396574 -64882980 - AluSx SINE Alu -17 295 1 242 56 28 0 chr6 124397117 124397153 -64882401 + (TTC)n Simple_repeat Simple_repeat 3 39 0 2116 142 0 3 chr6 124397156 124397458 -64882096 - AluSx SINE Alu -11 301 1 192 293 53 40 chr6 124398276 124398351 -64881203 - L2 LINE L2 -38 3275 3200 778 201 106 17 chr6 124398669 124398848 -64880706 + Charlie1b DNA MER1_type 1 195 -328 540 0 0 0 chr6 124398849 124398909 -64880645 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 13856 208 24 23 chr6 124398909 124403574 -64875980 - L1P5 LINE L1 -377 5836 999 2377 124 25 25 chr6 124403574 124403938 -64875616 + THE1B LTR MaLR 1 364 0 13856 208 24 23 chr6 124403938 124404249 -64875305 - L1P5 LINE L1 -5214 999 690 297 306 0 0 chr6 124404234 124404319 -64875235 - L1PA15-16 LINE L1 -5285 1564 1480 * 422 302 30 51 chr6 124404639 124404874 -64874680 - L1PA15-16 LINE L1 -5845 1005 776 364 381 84 43 chr6 124405005 124405443 -64874111 - L1M2 LINE L1 -6267 582 127 598 211 23 0 chr6 124405471 124405599 -64873955 + Charlie1b DNA MER1_type 393 523 0 3498 177 136 108 chr6 124406012 124406574 -64872980 - L1MC3 LINE L1 0 7785 7240 346 228 0 76 chr6 124406574 124406666 -64872888 - MLT1F1 LTR MaLR -448 119 35 3498 177 136 108 chr6 124406666 124406758 -64872796 - L1MC3 LINE L1 -545 7240 7152 2957 163 83 0 chr6 124406758 124406800 -64872754 - MLT2B1 LTR ERVL 0 520 483 258 32 0 0 chr6 124406800 124406831 -64872723 + (CA)n Simple_repeat Simple_repeat 2 32 0 2957 163 83 0 chr6 124406831 124407268 -64872286 - MLT2B1 LTR ERVL -37 483 1 3498 177 136 108 chr6 124407268 124407355 -64872199 - L1MC3 LINE L1 -633 7152 7069 8258 80 4 6 chr6 124407355 124408364 -64871190 - LTR13 LTR ERVK 0 1007 1 3498 177 136 108 chr6 124408364 124408725 -64870829 - L1MC3 LINE L1 -716 7069 6557 693 283 107 17 chr6 124409433 124409666 -64869888 + MIR SINE MIR 9 262 0 1340 186 52 114 chr6 124409766 124410152 -64869402 - MLT1A1 LTR MaLR -2 363 2 23 78 0 0 chr6 124410158 124410209 -64869345 + AT_rich Low_complexity Low_complexity 1 51 0 206 308 56 47 chr6 124410290 124410397 -64869157 - L2 LINE L2 -43 3229 3122 657 88 77 2 chr6 124410731 124411265 -64868289 + (TA)n Simple_repeat Simple_repeat 1 574 0 466 62 15 0 chr6 124411266 124411331 -64868223 - MER41A LTR ERV1 -89 465 400 1485 240 57 34 chr6 124411500 124411642 -64867912 + LTR40c LTR ERVL 1 138 -327 3240 129 11 2 chr6 124411642 124412091 -64867463 + MSTB2 LTR MaLR 1 453 -4 1485 240 57 34 chr6 124412091 124412390 -64867164 + LTR40c LTR ERVL 138 452 -13 502 287 54 64 chr6 124412411 124412892 -64866662 + L1ME3A LINE L1 635 1110 -5009 754 224 140 106 chr6 124412906 124413132 -64866422 + L1ME3A LINE L1 3813 4030 -2099 907 140 0 29 chr6 124413132 124413268 -64866286 - FLAM_A SINE Alu -1 132 1 754 224 140 106 chr6 124413268 124413626 -64865928 + L1ME3A LINE L1 4030 4417 -1712 966 284 63 54 chr6 124413793 124414816 -64864738 + L1ME3A LINE L1 4870 5945 -208 232 305 56 51 chr6 124414893 124415090 -64864464 + L1ME3A LINE L1 5948 6145 -8 2280 114 0 0 chr6 124415185 124415491 -64864063 - AluSx SINE Alu -6 306 1 476 291 107 53 chr6 124415509 124415715 -64863839 - MIR SINE MIR 0 262 46 208 293 191 45 chr6 124415760 124415917 -64863637 - L2 LINE L2 -255 3017 2838 181 348 213 13 chr6 124416534 124417144 -64862410 - L2 LINE L2 -1253 2061 1330 5279 155 19 7 chr6 124417371 124418335 -64861219 + L1MB7 LINE L1 5198 6175 -9 195 288 109 71 chr6 124419376 124419560 -64859994 + MIR SINE MIR 46 236 -26 277 235 44 0 chr6 124419927 124419995 -64859559 + L3b LINE CR1 1251 1321 -262 252 338 199 0 chr6 124420512 124420713 -64858841 - L2 LINE L2 -337 2977 2737 1989 176 68 14 chr6 124421677 124422594 -64856960 - L1MB3 LINE L1 -9 6174 5134 9127 110 15 12 chr6 124423764 124425033 -64854521 - HSMAR2 DNA Mariner -1 1301 26 2172 120 3 0 chr6 124425033 124425325 -64854229 - AluSx SINE Alu -19 293 1 9127 110 15 12 chr6 124425325 124425352 -64854202 - HSMAR2 DNA Mariner -1276 26 1 1713 129 0 0 chr6 124425517 124425749 -64853805 + 7SLRNA srpRNA srpRNA 1 232 -88 467 167 61 61 chr6 124427249 124427331 -64852223 - L1ME4a LINE L1 0 6121 6037 1028 186 0 12 chr6 124427331 124427498 -64852056 + FRAM SINE Alu 2 166 0 467 167 61 61 chr6 124427498 124427547 -64852007 - L1ME4a LINE L1 -83 6038 5990 266 231 0 0 chr6 124427616 124427668 -64851886 - L2 LINE L2 0 3272 3221 393 226 47 38 chr6 124427725 124427831 -64851723 - L2 LINE L2 -236 3077 2971 21 57 0 0 chr6 124428636 124428671 -64850883 + AT_rich Low_complexity Low_complexity 1 35 0 722 284 32 61 chr6 124428677 124428987 -64850567 - MLT1J1 LTR MaLR -5 441 141 1774 184 0 3 chr6 124429196 124429479 -64850075 - AluJo SINE Alu -30 282 1 2216 170 16 10 chr6 124430291 124430679 -64848875 - MLT1B LTR MaLR 0 390 1 319 213 133 73 chr6 124430717 124430827 -64848727 + MER5A DNA MER1_type 5 128 -61 2334 104 0 0 chr6 124430827 124431124 -64848430 - AluSg SINE Alu -13 297 1 319 213 133 73 chr6 124431124 124431163 -64848391 + MER5A DNA MER1_type 128 163 -26 220 258 45 0 chr6 124431451 124431517 -64848037 - MIR SINE MIR -117 145 77 2255 107 7 0 chr6 124431565 124431863 -64847691 - AluSx SINE Alu -12 300 1 285 109 0 0 chr6 124432502 124432548 -64847006 + (TGGA)n Simple_repeat Simple_repeat 3 48 0 218 372 35 9 chr6 124432762 124432875 -64846679 - MIR SINE MIR -65 143 28 251 231 0 0 chr6 124433328 124433380 -64846174 + L2 LINE L2 3262 3313 0 1878 179 52 0 chr6 124434113 124434442 -64845112 - MER7A DNA MER2_type 0 346 3 2107 124 0 13 chr6 124436881 124437188 -64842366 - AluSx SINE Alu -9 303 1 544 256 25 0 chr6 124437232 124437353 -64842201 - MIR SINE MIR -94 168 45 258 379 90 11 chr6 124437790 124437967 -64841587 - L2 LINE L2 0 3272 3082 1220 93 126 0 chr6 124438047 124438230 -64841324 + AluSg SINE Alu 1 206 -104 848 259 55 0 chr6 124438285 124438505 -64841049 - MIR SINE MIR 0 262 31 1976 162 13 0 chr6 124438544 124438852 -64840702 - AluSx SINE Alu 0 312 1 2114 119 3 3 chr6 124438861 124439154 -64840400 - AluSq SINE Alu -20 293 1 212 165 212 24 chr6 124440256 124440341 -64839213 - L2 LINE L2 0 3272 3172 205 321 71 0 chr6 124440372 124440456 -64839098 + L2 LINE L2 3139 3228 -44 1158 36 0 0 chr6 124441251 124441388 -64838166 - AluYa5/8 SINE Alu 0 310 174 1622 164 33 49 chr6 124442572 124442877 -64836677 - AluJb SINE Alu -11 301 2 1628 199 47 33 chr6 124442906 124443267 -64836287 - MLT1B LTR MaLR -2 388 23 1406 177 13 88 chr6 124443293 124443666 -64835888 - MLT1A2 LTR MaLR 0 374 30 440 216 93 14 chr6 124443694 124443833 -64835721 - LTR33A LTR ERVL 0 523 374 498 283 64 23 chr6 124443949 124444295 -64835259 - L1M4 LINE L1 -1520 4626 4267 2033 135 36 7 chr6 124444320 124444623 -64834931 + AluSq SINE Alu 1 312 -1 252 289 77 0 chr6 124445029 124445133 -64834421 + MIR SINE MIR 90 201 -61 724 270 58 46 chr6 124445414 124445655 -64833899 + MER69 DNA AcHobo 4 247 -2279 439 152 22 33 chr6 124445654 124445746 -64833808 + MER69 DNA AcHobo 2436 2526 0 * 602 219 50 135 chr6 124446186 124446446 -64833108 - LTR26B LTR ERV1 -293 238 1 184 268 18 0 chr6 124447481 124447537 -64832017 + L2 LINE L2 3251 3307 -6 4255 175 20 47 chr6 124447575 124448410 -64831144 + MER21B LTR ERV1 1 813 -50 233 330 76 17 chr6 124448495 124448613 -64830941 - MIR SINE MIR -50 212 88 496 258 48 32 chr6 124448649 124448669 -64830885 + MIR SINE MIR 15 33 -229 2402 88 0 0 chr6 124448669 124448974 -64830580 + AluY SINE Alu 1 305 -6 496 258 48 32 chr6 124448974 124449139 -64830415 + MIR SINE MIR 33 203 -59 3706 149 6 2 chr6 124449308 124449833 -64829721 + MER1A DNA MER1_type 1 527 0 2156 119 0 0 chr6 124451750 124452044 -64827510 + AluSg SINE Alu 1 294 -16 1727 185 26 0 chr6 124452650 124452953 -64826601 - AluJb SINE Alu -1 311 1 852 294 52 28 chr6 124452989 124453377 -64826177 - MLT1I LTR MaLR -8 401 5 1686 127 0 32 chr6 124453553 124453805 -64825749 - AluSg SINE Alu -15 295 52 236 75 0 25 chr6 124454029 124454069 -64825485 - HAL1 LINE L1 0 2507 2469 2327 241 67 40 chr6 124454089 124454899 -64824655 - HAL1 LINE L1 -1250 1257 426 2668 86 5 34 chr6 124455009 124455395 -64824159 + THE1C LTR MaLR 1 375 0 602 178 0 0 chr6 124455740 124455847 -64823707 + MIR SINE MIR 156 262 0 252 242 61 0 chr6 124458515 124458581 -64820973 + MARNA DNA Mariner 186 255 -331 214 309 37 12 chr6 124458699 124458780 -64820774 - L2 LINE L2 0 3313 3231 181 341 11 0 chr6 124459102 124459193 -64820361 - L2 LINE L2 -339 2975 2884 * 390 318 59 33 chr6 124459191 124459665 -64819889 - L2 LINE L2 -550 2764 2224 1539 143 92 18 chr6 124459911 124460184 -64819370 - AluJb SINE Alu -18 294 2 1928 166 0 3 chr6 124460484 124460786 -64818768 + AluJb SINE Alu 1 301 -11 220 254 32 0 chr6 124461897 124461960 -64817594 - L2 LINE L2 0 3313 3249 940 237 129 105 chr6 124462229 124462530 -64817024 + Tigger8 DNA MER2_type 15 307 -359 203 30 0 61 chr6 124462530 124462563 -64816991 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 940 237 129 105 chr6 124462563 124462851 -64816703 + Tigger8 DNA MER2_type 307 618 -48 3394 185 103 59 chr6 124463071 124463169 -64816385 - L1MC4 LINE L1 -66 7976 7884 2167 89 22 0 chr6 124463169 124463439 -64816115 - AluSq SINE Alu -37 276 1 3394 185 103 59 chr6 124463439 124464394 -64815160 - L1MC4 LINE L1 -158 7884 6876 258 333 0 0 chr6 124464608 124464683 -64814871 - MER115 DNA AcHobo -150 543 469 657 274 143 12 chr6 124464717 124464976 -64814578 - MER115 DNA AcHobo -345 348 56 396 0 0 0 chr6 124467394 124467438 -64812116 + (TG)n Simple_repeat Simple_repeat 2 45 0 483 302 39 11 chr6 124468614 124468793 -64810761 - MIR SINE MIR -14 248 65 279 0 0 0 chr6 124469099 124469130 -64810424 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 193 250 0 0 chr6 124469441 124469485 -64810069 + L2 LINE L2 3264 3307 -6 836 184 25 0 chr6 124469771 124469929 -64809625 - AluSg/x SINE Alu -8 304 143 1197 215 87 46 chr6 124470381 124470772 -64808782 - MLT2B1 LTR ERVL -105 393 5 206 330 53 11 chr6 124470815 124470909 -64808645 - L2 LINE L2 -16 3256 3159 450 258 41 41 chr6 124470972 124471172 -64808382 - MIR SINE MIR -59 149 2 791 129 10 119 chr6 124471358 124471415 -64808139 + L1MB3 LINE L1 6005 6067 -116 2026 141 0 7 chr6 124471415 124471713 -64807841 + AluJb SINE Alu 1 296 -16 791 129 10 119 chr6 124471713 124471856 -64807698 + L1MB3 LINE L1 6067 6183 0 608 160 23 76 chr6 124473183 124473314 -64806240 + FLAM_A SINE Alu 1 124 -9 412 261 35 0 chr6 124474001 124474116 -64805438 + MER103 DNA DNA 2 120 -46 1984 96 50 63 chr6 124474168 124474470 -64805084 + AluSx SINE Alu 1 298 -14 24 32 0 0 chr6 124475055 124475086 -64804468 + AT_rich Low_complexity Low_complexity 1 31 0 610 200 63 46 chr6 124475401 124475576 -64803978 + MER5B DNA MER1_type 1 178 0 2975 149 28 53 chr6 124475833 124476378 -64803176 + MER89 LTR ERV1 5 537 -22 2990 155 59 0 chr6 124476378 124476869 -64802685 - MLT2B1 LTR ERVL 0 520 1 2975 149 28 53 chr6 124476869 124476888 -64802666 + MER89 LTR ERV1 537 555 -4 656 294 36 17 chr6 124478127 124478514 -64801040 - MLT1J LTR MaLR -7 504 61 2373 194 111 14 chr6 124478560 124479147 -64800407 + LTR48B LTR ERV1 1 644 0 1100 214 5 40 chr6 124480102 124480326 -64799228 - MER58A DNA MER1_type 0 224 9 14581 111 13 1 chr6 124480922 124483800 -64795754 - L1PA8A LINE L1 0 6446 3527 1492 40 0 0 chr6 124483827 124484004 -64795550 - L1PA4 LINE L1 -3 6152 5976 13281 151 6 26 chr6 124484004 124487538 -64792016 - L1PA8A LINE L1 -2928 3533 8 380 192 5 201 chr6 124487772 124487991 -64791563 + MER5B DNA MER1_type 1 176 -2 498 291 17 23 chr6 124487998 124488170 -64791384 + MER5B DNA MER1_type 5 175 -3 2380 122 28 22 chr6 124488428 124488789 -64790765 - THE1B LTR MaLR -1 363 1 318 336 8 8 chr6 124489028 124489153 -64790401 - MER5B DNA MER1_type -29 149 25 210 207 49 12 chr6 124489471 124489553 -64790001 + CT-rich Low_complexity Low_complexity 3 87 0 1609 86 176 16 chr6 124489754 124490009 -64789545 + AluSg SINE Alu 3 298 -2 1124 271 68 80 chr6 124490161 124491160 -64788394 - L1MEd LINE L1 -867 1623 527 259 300 9 36 chr6 124491258 124491368 -64788186 - L1MEd LINE L1 -5770 349 243 326 302 19 0 chr6 124491584 124491690 -64787864 + L2 LINE L2 3204 3311 -2 301 277 101 38 chr6 124491702 124492349 -64787205 + L1MC4a LINE L1 5255 6046 -75 22 35 0 0 chr6 124492404 124492433 -64787121 + AT_rich Low_complexity Low_complexity 1 29 0 2441 57 3 13 chr6 124492602 124492901 -64786653 - AluY SINE Alu -15 296 1 1834 257 57 19 chr6 124493418 124494320 -64785234 - L2 LINE L2 -4 3309 2369 8710 115 16 8 chr6 124494601 124495892 -64783662 - HSMAR2 DNA Mariner 0 1302 1 193 152 0 0 chr6 124496703 124496736 -64782818 - MIR SINE MIR -74 188 156 180 261 0 62 chr6 124498338 124498403 -64781151 + L2 LINE L2 2712 2772 -542 751 179 8 15 chr6 124499673 124499807 -64779747 - FLAM_A SINE Alu 0 133 1 372 155 25 174 chr6 124499962 124500123 -64779431 - MIR SINE MIR -30 232 96 330 167 0 0 chr6 124500288 124500348 -64779206 + GA-rich Low_complexity Low_complexity 1 60 0 280 301 11 11 chr6 124500649 124500742 -64778812 + MER5A DNA MER1_type 93 185 -4 1756 158 0 31 chr6 124502075 124502396 -64777158 - AluJb SINE Alu 0 312 1 684 200 0 21 chr6 124502814 124502959 -64776595 - L2 LINE L2 0 3313 3172 1289 242 219 8 chr6 124502965 124503457 -64776097 + L2 LINE L2 1909 2504 -810 422 245 59 0 chr6 124503457 124503559 -64775995 + L1ME LINE L1 5679 5786 -335 432 244 0 30 chr6 124503638 124503769 -64775785 - L1MC5 LINE L1 -101 7860 7734 2838 140 14 5 chr6 124504025 124504447 -64775107 + MSTB LTR MaLR 1 426 0 1168 176 28 23 chr6 124504569 124504785 -64774769 - MER20 DNA MER1_type 0 219 3 230 370 0 0 chr6 124505976 124506068 -64773486 - MIR SINE MIR -123 139 48 226 202 40 48 chr6 124507629 124507753 -64771801 + (CCGCG)n Simple_repeat Simple_repeat 5 127 0 29 90 0 0 chr6 124507786 124507864 -64771690 + GC_rich Low_complexity Low_complexity 1 78 0 2290 110 3 0 chr6 124509351 124509660 -64769894 - AluSx SINE Alu -2 310 1 545 281 323 0 chr6 124509940 124510324 -64769230 - L2 LINE L2 -681 2633 2126 195 42 0 0 chr6 124512253 124512277 -64767277 + (A)n Simple_repeat Simple_repeat 1 24 0 28 48 0 0 chr6 124513844 124513886 -64765668 + AT_rich Low_complexity Low_complexity 1 42 0 842 204 224 12 chr6 124514605 124514727 -64764827 - AluYa5 SINE Alu -4 297 202 2136 82 0 4 chr6 124514727 124514995 -64764559 - AluSg SINE Alu -43 267 1 537 16 0 0 chr6 124515000 124515062 -64764492 + (TTTTA)n Simple_repeat Simple_repeat 4 65 0 842 204 224 12 chr6 124515062 124515178 -64764376 - AluYa5 SINE Alu -102 199 1 329 183 33 0 chr6 124515408 124515468 -64764086 - MLT1K LTR MaLR 0 588 527 885 268 296 0 chr6 124515598 124516024 -64763530 + LTR67 LTR ERVL 2 553 -4 923 303 65 26 chr6 124516288 124516671 -64762883 - MLT1I LTR MaLR -11 398 1 340 298 60 7 chr6 124517547 124517698 -64761856 + MIR SINE MIR 92 250 -12 25 0 0 0 chr6 124517806 124517831 -64761723 + AT_rich Low_complexity Low_complexity 1 25 0 338 311 66 12 chr6 124518437 124518604 -64760950 - MIR SINE MIR -38 224 49 2267 113 0 10 chr6 124519017 124519317 -64760237 + AluSx SINE Alu 1 297 -15 435 273 128 6 chr6 124519415 124519587 -64759967 + L2 LINE L2 3118 3310 -3 1117 159 59 114 chr6 124519782 124519873 -64759681 + MER58D DNA MER1_type 49 144 -2276 6184 106 20 4 chr6 124519873 124521153 -64758401 - L1PA14 LINE L1 0 6161 4878 1117 159 59 114 chr6 124521153 124521419 -64758135 + MER58D DNA MER1_type 144 386 0 236 265 0 0 chr6 124522389 124522457 -64757097 + MIR SINE MIR 195 262 0 3043 151 22 9 chr6 124522735 124523273 -64756281 + L1MB7 LINE L1 5618 6162 -22 2163 133 0 3 chr6 124527314 124527607 -64751947 - AluSx SINE Alu -20 292 1 4789 105 1 0 chr6 124528382 124529046 -64750508 - L1PA14 LINE L1 0 6161 5497 2527 62 3 0 chr6 124529059 124529363 -64750191 - AluY SINE Alu -6 305 1 540 188 21 151 chr6 124529401 124529587 -64749967 - MLT1I LTR MaLR 0 409 248 449 339 11 6 chr6 124529907 124530084 -64749470 + MIR3 SINE MIR 3 180 -28 690 106 8 98 chr6 124530118 124530250 -64749304 + FLAM_A SINE Alu 23 142 0 1849 112 82 4 chr6 124532080 124532347 -64747207 + AluSx SINE Alu 1 288 -24 32 0 0 0 chr6 124532350 124532382 -64747172 + AT_rich Low_complexity Low_complexity 1 32 0 218 191 0 0 chr6 124532794 124532836 -64746718 + GA-rich Low_complexity Low_complexity 1 42 0 1808 168 3 7 chr6 124532898 124533196 -64746358 - AluJo SINE Alu -15 297 1 1773 255 49 39 chr6 124533982 124534133 -64745421 - L1ME LINE L1 -4811 1595 1447 1882 164 6 10 chr6 124534133 124534445 -64745109 - AluJb SINE Alu -1 311 1 1773 255 49 39 chr6 124534445 124535120 -64744434 - L1ME LINE L1 -4959 1447 795 343 306 27 0 chr6 124535868 124536007 -64743547 - L1ME LINE L1 -5923 473 329 375 204 183 29 chr6 124538892 124539029 -64740525 + LTR33 LTR ERVL 13 170 -351 638 253 40 17 chr6 124539096 124539270 -64740284 + LTR33 LTR ERVL 341 518 -3 2457 163 88 17 chr6 124539308 124539857 -64739697 - MER39 LTR ERV1 -13 694 57 1910 180 21 9 chr6 124539857 124540196 -64739358 + MER61A LTR ERV1 1 343 0 2457 163 88 17 chr6 124540196 124540258 -64739296 - MER39 LTR ERV1 -650 57 1 1242 212 9 0 chr6 124540341 124540563 -64738991 + MER58A DNA MER1_type 1 224 0 282 299 112 8 chr6 124540880 124541014 -64738540 + L2 LINE L2 3122 3269 -3 474 145 26 0 chr6 124541192 124541268 -64738286 - MER45A DNA AcHobo -1 177 100 356 122 0 0 chr6 124541274 124541323 -64738231 + MER66B LTR ERV1 298 346 -140 527 162 192 0 chr6 124541335 124541434 -64738120 - MER45A DNA AcHobo -60 118 1 216 0 0 0 chr6 124544557 124544581 -64734973 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2203 110 0 0 chr6 124544585 124544867 -64734687 - AluSx SINE Alu -30 282 1 293 291 10 19 chr6 124544905 124545008 -64734546 + MIR3 SINE MIR 85 186 -22 302 212 15 0 chr6 124545043 124545109 -64734445 - L2 LINE L2 -6 3307 3241 252 187 33 77 chr6 124545719 124545810 -64733744 - L2 LINE L2 0 3313 3227 404 37 19 0 chr6 124546349 124546403 -64733151 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 294 29 0 0 chr6 124546526 124546561 -64732993 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 57 0 0 chr6 124546795 124546830 -64732724 + AT_rich Low_complexity Low_complexity 1 35 0 2247 101 9 22 chr6 124547140 124547456 -64732098 - AluSx SINE Alu 0 312 1 578 250 50 6 chr6 124547897 124548057 -64731497 - MER5A DNA MER1_type -22 167 1 1988 143 32 19 chr6 124548900 124549208 -64730346 - AluJb SINE Alu 0 312 1 1939 152 0 7 chr6 124550845 124551142 -64728412 - AluJb SINE Alu -17 295 1 181 176 0 0 chr6 124551922 124551956 -64727598 + L2 LINE L2 3266 3299 -14 6062 115 13 13 chr6 124552445 124552689 -64726865 - L1MA4A LINE L1 -6 6297 6054 2809 83 16 3 chr6 124552689 124553061 -64726493 + MER51B LTR ERV1 1 377 0 6062 115 13 13 chr6 124553061 124553740 -64725814 - L1MA4A LINE L1 -248 6055 5374 1335 139 4 20 chr6 124553740 124553984 -64725570 + L1MA4A LINE L1 5120 5359 -787 2234 100 0 57 chr6 124554029 124554381 -64725173 + AluSx SINE Alu 1 333 0 227 316 95 0 chr6 124556372 124556467 -64723087 - L2 LINE L2 -10 3303 3200 2227 106 0 3 chr6 124557196 124557489 -64722065 - AluSx SINE Alu -18 294 3 25 51 0 0 chr6 124558536 124558575 -64720979 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr6 124559027 124559059 -64720495 + AT_rich Low_complexity Low_complexity 1 32 0 732 174 0 0 chr6 124559067 124559182 -64720372 + FLAM_C SINE Alu 1 115 -28 265 352 83 0 chr6 124559797 124559905 -64719649 + L2 LINE L2 3134 3250 -22 608 209 144 13 chr6 124560030 124560183 -64719371 - FAM SINE Alu -2 173 1 1273 152 5 14 chr6 124560199 124560410 -64719144 - AluJo SINE Alu 0 312 104 1943 176 0 13 chr6 124560567 124560879 -64718675 + AluJb SINE Alu 1 308 -4 431 68 0 0 chr6 124560914 124560973 -64718581 - Alu SINE Alu -12 299 241 758 237 107 40 chr6 124561079 124561480 -64718074 + L2 LINE L2 2182 3155 -158 1574 198 35 33 chr6 124561546 124561882 -64717672 + LTR37A LTR ERV1 2 336 -90 1881 145 7 30 chr6 124561882 124562186 -64717368 + AluJo SINE Alu 1 297 -15 2156 106 10 22 chr6 124562188 124562499 -64717055 + AluSq SINE Alu 3 309 -4 1574 198 35 33 chr6 124562499 124562583 -64716971 + LTR37A LTR ERV1 336 426 0 604 228 69 7 chr6 124562666 124562811 -64716743 + L2 LINE L2 3159 3312 -1 236 189 0 0 chr6 124563424 124563477 -64716077 + L1ME LINE L1 5734 5786 -335 21 36 0 0 chr6 124563496 124563524 -64716030 + AT_rich Low_complexity Low_complexity 1 28 0 2214 135 0 0 chr6 124563570 124563882 -64715672 + AluSx SINE Alu 1 312 0 2069 131 0 25 chr6 124563911 124564225 -64715329 + AluSx SINE Alu 1 306 -6 277 292 106 35 chr6 124565550 124565663 -64713891 + MIR SINE MIR 2 122 -140 2385 86 7 0 chr6 124565749 124566053 -64713501 + AluSx SINE Alu 1 306 -6 2063 117 13 33 chr6 124566557 124566864 -64712690 - AluSx SINE Alu -11 301 1 191 323 84 40 chr6 124567390 124567712 -64711842 + L2 LINE L2 2127 2462 -852 2261 110 3 0 chr6 124567712 124568012 -64711542 + AluSx SINE Alu 1 301 -11 476 296 81 96 chr6 124568115 124568450 -64711104 + L2 LINE L2 2937 3266 -6 199 276 35 0 chr6 124569399 124569457 -64710097 + L2 LINE L2 3253 3312 -1 823 132 0 8 chr6 124569771 124569892 -64709662 + FLAM_C SINE Alu 1 120 -23 33 0 0 0 chr6 124569892 124569925 -64709629 + AT_rich Low_complexity Low_complexity 1 33 0 1152 110 0 0 chr6 124570958 124571104 -64708450 + AluSq/x SINE Alu 1 146 -167 428 155 0 0 chr6 124571120 124571191 -64708363 + AluS SINE Alu 224 294 -15 4645 264 41 18 chr6 124571232 124572836 -64706718 + L1PBa LINE L1 3 1643 -5220 * 5982 150 24 9 chr6 124572803 124574042 -64705512 + L1PBb LINE L1 7 1263 -4941 2237 116 0 3 chr6 124574047 124574348 -64705206 + AluSg SINE Alu 1 300 -10 477 186 0 41 chr6 124574352 124574449 -64705105 + AluS SINE Alu 1 93 -219 180 135 108 0 chr6 124574879 124574916 -64704638 - MIR SINE MIR -163 99 59 1331 235 21 90 chr6 124575163 124575720 -64703834 + LTR26E LTR ERV1 1 583 -12 362 318 101 23 chr6 124575788 124575917 -64703637 + L2 LINE L2 3134 3272 0 501 237 69 53 chr6 124575940 124575975 -64703579 - MIR SINE MIR -27 235 202 1757 139 55 4 chr6 124575975 124576249 -64703305 + AluJb SINE Alu 1 288 -24 501 237 69 53 chr6 124576249 124576407 -64703147 - MIR SINE MIR -60 202 42 1895 153 0 44 chr6 124576961 124577281 -64702273 - AluJo SINE Alu -6 306 1 802 167 8 8 chr6 124577284 124577416 -64702138 - AluJo/FLAM SINE Alu -180 132 1 1945 83 0 4 chr6 124578676 124578928 -64700626 + AluSc SINE Alu 58 308 -1 1362 264 49 12 chr6 124579205 124579936 -64699618 - L1M4c LINE L1 -2336 4308 3518 1818 213 0 0 chr6 124580021 124580331 -64699223 - AluJb SINE Alu -1 311 2 1814 235 75 65 chr6 124580346 124580776 -64698778 - L1M4c LINE L1 -4317 2508 2084 2208 113 7 3 chr6 124580776 124581078 -64698476 - AluSp SINE Alu -10 303 1 1814 235 75 65 chr6 124581078 124582236 -64697318 - L1M4c LINE L1 -4741 2084 722 2584 57 3 6 chr6 124582321 124582639 -64696915 - AluYb8 SINE Alu -1 317 1 2357 101 0 3 chr6 124582891 124583199 -64696355 - AluSg SINE Alu -3 307 1 1449 117 75 17 chr6 124583265 124583554 -64696000 + LTR54 LTR ERV1 1 333 -165 570 234 14 0 chr6 124583557 124583702 -64695852 + MER57A LTR ERV1 252 398 -5 335 302 78 39 chr6 124583714 124583946 -64695608 + MER57A-int LTR ERV1 7 247 -7290 4068 113 17 30 chr6 124584078 124584740 -64694814 - MER39B LTR ERV1 0 653 1 769 190 80 13 chr6 124584742 124584979 -64694575 + MER57A-int LTR ERV1 1119 1371 -3565 700 208 14 102 chr6 124585020 124585178 -64694376 + LTR57-int LTR ERVL 1259 1381 -3962 2029 143 3 0 chr6 124585178 124585478 -64694076 - AluSx SINE Alu -11 301 1 700 208 14 102 chr6 124585478 124585613 -64693941 + LTR57-int LTR ERVL 1381 1526 -3817 490 197 6 85 chr6 124585515 124585709 -64693845 + MER57A-int LTR ERV1 1707 1797 -3139 * 2135 138 0 0 chr6 124585709 124586006 -64693548 + AluSx SINE Alu 1 297 -15 490 197 6 85 chr6 124586006 124586051 -64693503 + MER57A-int LTR ERV1 1797 1844 -3092 14912 131 24 11 chr6 124586054 124588688 -64690866 + L1P LINE L1 1529 4196 -1950 267 116 35 58 chr6 124588689 124588775 -64690779 + (TATAA)n Simple_repeat Simple_repeat 5 88 0 3489 95 4 10 chr6 124588786 124589279 -64690275 + L1PA10 LINE L1 5671 6160 -8 293 200 17 0 chr6 124589472 124589532 -64690022 + MER57A-int LTR ERV1 2506 2566 -2370 180 0 0 0 chr6 124589532 124589552 -64690002 + (T)n Simple_repeat Simple_repeat 1 20 0 187 157 20 78 chr6 124589630 124589681 -64689873 - L2 LINE L2 0 3313 3266 318 277 196 16 chr6 124589909 124590093 -64689461 - MLT1K LTR MaLR -36 552 336 388 216 265 0 chr6 124590131 124590233 -64689321 - MLT1K LTR MaLR -337 251 123 301 227 222 22 chr6 124590681 124590866 -64688688 + MER57A-int LTR ERV1 2555 2776 -2160 884 154 131 88 chr6 124590927 124591287 -64688267 + LTR49-int LTR ERV1 3001 3174 -1762 259 354 131 53 chr6 124591399 124592304 -64687250 + L2 LINE L2 2301 3272 0 188 331 154 31 chr6 124592358 124592488 -64687066 - L2 LINE L2 -10 3262 3117 1779 174 3 20 chr6 124593075 124593374 -64686180 + AluJb SINE Alu 1 294 -18 26 64 0 0 chr6 124593793 124593840 -64685714 + AT_rich Low_complexity Low_complexity 1 47 0 189 281 16 0 chr6 124594195 124594259 -64685295 + L3 LINE CR1 377 441 -1136 346 268 62 10 chr6 124594352 124594449 -64685105 + L3 LINE CR1 433 534 -1043 2292 110 0 19 chr6 124594636 124594954 -64684600 + AluSx SINE Alu 1 312 0 930 194 18 0 chr6 124595292 124595462 -64684092 + FAM SINE Alu 2 174 -1 262 291 0 23 chr6 124595508 124595594 -64683960 - Tigger5 DNA MER2_type 0 2323 2240 * 294 271 0 0 chr6 124595587 124595657 -64683897 + Tigger5 DNA MER2_type 2249 2318 -5 380 149 0 15 chr6 124595658 124595725 -64683829 - Tigger5 DNA MER2_type -2244 79 14 359 218 0 12 chr6 124595819 124595903 -64683651 - MLT1E LTR MaLR -450 117 34 1681 218 110 88 chr6 124595933 124596741 -64682813 + LTR1B LTR ERV1 1 826 0 620 228 32 0 chr6 124596778 124596901 -64682653 + FLAM_A SINE Alu 1 127 -6 611 268 75 70 chr6 124597010 124597465 -64682089 - Tigger8 DNA MER2_type -55 611 155 264 242 30 0 chr6 124597892 124597958 -64681596 + MIR SINE MIR 110 177 -85 21 36 0 0 chr6 124598222 124598250 -64681304 + AT_rich Low_complexity Low_complexity 1 28 0 339 219 51 11 chr6 124599354 124599465 -64680089 - L1ME1 LINE L1 0 6334 6062 344 259 89 57 chr6 124599704 124599862 -64679692 + MIR3 SINE MIR 44 206 -2 342 330 209 23 chr6 124600607 124601507 -64678047 - L2 LINE L2 -7 3265 2216 2450 97 0 0 chr6 124601510 124601819 -64677735 - AluSg SINE Alu -1 309 1 2248 115 3 3 chr6 124601934 124602246 -64677308 - AluSp SINE Alu -1 312 1 254 301 106 9 chr6 124602357 124602470 -64677084 - L2 LINE L2 -1 3271 3148 734 144 0 0 chr6 124604693 124604924 -64674630 - AluSg/x SINE Alu 0 420 190 22 0 0 0 chr6 124604988 124605010 -64674544 + AT_rich Low_complexity Low_complexity 1 22 0 439 274 64 8 chr6 124605040 124605320 -64674234 + L1 LINE L1 3474 3770 -2376 802 154 0 8 chr6 124605324 124605454 -64674100 - AluJb SINE Alu -183 129 1 448 116 23 0 chr6 124605599 124605685 -64673869 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 380 268 155 28 chr6 124606182 124606324 -64673230 + L2 LINE L2 2911 3070 -243 350 297 16 22 chr6 124606724 124606909 -64672645 - L1ME1 LINE L1 -211 5951 5768 1071 259 71 22 chr6 124606931 124607660 -64671894 - L1ME1 LINE L1 -530 5640 4881 305 250 71 83 chr6 124607721 124607889 -64671665 - L1ME1 LINE L1 -1506 4640 4475 2180 69 18 0 chr6 124607901 124608204 -64671350 + AluY SINE Alu 1 308 0 1356 95 6 0 chr6 124608204 124608383 -64671171 + AluSg/x SINE Alu 131 310 0 1220 287 133 23 chr6 124608387 124609341 -64670213 - L1ME1 LINE L1 -1678 4468 3410 524 237 171 13 chr6 124610509 124610661 -64668893 + MER5A DNA MER1_type 13 188 -1 831 113 0 85 chr6 124610690 124610831 -64668723 - FLAM_C SINE Alu -4 129 1 410 350 71 24 chr6 124610885 124611182 -64668372 - L2 LINE L2 -945 2369 2059 1340 206 41 49 chr6 124611760 124612125 -64667429 + MLT1A1 LTR MaLR 3 364 -1 258 239 0 0 chr6 124612666 124612737 -64666817 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 964 183 45 30 chr6 124612885 124613087 -64666467 - AluJb SINE Alu -11 301 97 2064 146 0 3 chr6 124613294 124613596 -64665958 + AluSx SINE Alu 1 301 -11 1297 179 38 19 chr6 124613690 124613952 -64665602 + Tigger7 DNA MER2_type 1 267 -2220 633 120 0 20 chr6 124613951 124614051 -64665503 + Tigger7 DNA MER2_type 2390 2487 0 * 1498 127 5 0 chr6 124614807 124615020 -64664534 - AluSx SINE Alu -98 214 1 23 33 0 0 chr6 124617529 124617559 -64661995 + AT_rich Low_complexity Low_complexity 1 30 0 249 86 0 0 chr6 124617566 124617601 -64661953 + U2 snRNA snRNA 1 35 -153 510 212 25 143 chr6 124617720 124617820 -64661734 - MIR SINE MIR -65 197 131 2109 105 0 0 chr6 124617820 124618097 -64661457 + AluSx SINE Alu 6 282 -30 510 212 25 143 chr6 124618097 124618199 -64661355 - MIR SINE MIR -131 131 19 2202 82 0 10 chr6 124618305 124618599 -64660955 + AluSc SINE Alu 1 291 -18 207 0 0 0 chr6 124618624 124618647 -64660907 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 856 263 19 5 chr6 124618666 124618871 -64660683 - MER63A DNA MER1_type 0 210 3 482 295 29 38 chr6 124619046 124619256 -64660298 - MIR SINE MIR -3 259 52 2185 106 0 3 chr6 124619593 124619886 -64659668 - AluSx SINE Alu -20 292 1 2244 69 4 4 chr6 124620929 124621205 -64658349 - AluSc SINE Alu -33 276 1 198 213 128 0 chr6 124622593 124622640 -64656914 + L2 LINE L2 3242 3294 -19 2309 78 0 10 chr6 124623066 124623362 -64656192 + AluSx SINE Alu 1 293 -19 184 356 0 27 chr6 124624981 124625054 -64654500 + L3 LINE CR1 1490 1560 -17 1678 164 6 65 chr6 124625299 124625623 -64653931 + AluJo SINE Alu 1 305 -7 239 390 46 32 chr6 124625754 124626035 -64653519 - L2 LINE L2 -707 2607 2317 1881 157 0 20 chr6 124626035 124626329 -64653225 + AluJo SINE Alu 1 288 -24 239 390 46 32 chr6 124626329 124626457 -64653097 - L2 LINE L2 -997 2317 2192 294 344 16 16 chr6 124626532 124626654 -64652900 - L2 LINE L2 -12 3301 3180 2171 121 13 3 chr6 124626680 124626987 -64652567 + AluSx SINE Alu 1 310 -2 467 107 13 0 chr6 124626991 124627066 -64652488 + (GGAA)n Simple_repeat Simple_repeat 4 79 0 2364 78 3 26 chr6 124627395 124627702 -64651852 + AluSg SINE Alu 1 300 -10 721 254 18 18 chr6 124627747 124627967 -64651587 - L2 LINE L2 -2 3311 3092 564 196 75 0 chr6 124628046 124628153 -64651401 + FLAM_A SINE Alu 2 116 -17 241 167 21 42 chr6 124628158 124628254 -64651300 + GA-rich Low_complexity Low_complexity 4 97 0 313 220 188 16 chr6 124628596 124628782 -64650772 + L1M4 LINE L1 2169 2386 -3760 * 716 106 0 0 chr6 124628777 124628881 -64650673 + L1MA2 LINE L1 5849 5952 -353 600 163 0 0 chr6 124629191 124629283 -64650271 + FLAM_C SINE Alu 25 116 -27 221 127 55 18 chr6 124629286 124629346 -64650208 + (TTTAA)n Simple_repeat Simple_repeat 1 62 0 2218 97 19 19 chr6 124629365 124629384 -64650170 + L1MA2 LINE L1 5933 5951 -353 2353 95 0 7 chr6 124629384 124629688 -64649866 + AluSg SINE Alu 1 302 -8 2218 97 19 19 chr6 124629688 124630028 -64649526 + L1MA2 LINE L1 5950 6292 -12 850 265 136 32 chr6 124630249 124630932 -64648622 + L1M4 LINE L1 2377 3130 -3016 346 141 0 31 chr6 124681864 124681928 -64597626 - AluS SINE Alu -246 62 1 912 176 18 18 chr6 124682009 124682174 -64597380 + FRAM SINE Alu 2 166 -10 374 244 165 9 chr6 124682230 124682345 -64597209 - L2 LINE L2 0 3272 3140 27 62 0 0 chr6 124682618 124682666 -64596888 + AT_rich Low_complexity Low_complexity 1 48 0 533 214 57 7 chr6 124682791 124682931 -64596623 + MIR SINE MIR 116 262 0 23 33 0 0 chr6 124683160 124683190 -64596364 + AT_rich Low_complexity Low_complexity 1 30 0 1599 152 72 18 chr6 124683314 124683591 -64595963 + AluJo SINE Alu 11 302 -10 24 53 0 0 chr6 124683656 124683694 -64595860 + AT_rich Low_complexity Low_complexity 1 38 0 1616 168 51 0 chr6 124687001 124687275 -64592279 - AluJb SINE Alu -20 292 5 2332 85 3 0 chr6 124687396 124687689 -64591865 - AluSg SINE Alu -16 294 1 264 258 32 43 chr6 124687887 124687980 -64591574 - MIR3 SINE MIR -13 195 104 2136 114 10 3 chr6 124688456 124688753 -64590801 - AluSx SINE Alu -13 299 1 3430 131 15 4 chr6 124688783 124689301 -64590253 + MER1A DNA MER1_type 4 527 0 29 78 0 0 chr6 124689794 124689858 -64589696 + AT_rich Low_complexity Low_complexity 1 64 0 332 209 122 0 chr6 124689876 124689991 -64589563 - L1MC5 LINE L1 -108 7853 7725 713 180 16 0 chr6 124690355 124690477 -64589077 - FLAM_C SINE Alu -10 133 10 1831 167 3 3 chr6 124690526 124690849 -64588705 - AluJb SINE Alu 0 312 1 1776 166 17 10 chr6 124691009 124691305 -64588249 - AluJb SINE Alu -14 298 1 1965 156 3 13 chr6 124691650 124691952 -64587602 - AluJb SINE Alu -13 299 1 2199 102 0 7 chr6 124692104 124692399 -64587155 - AluSc SINE Alu -16 293 1 350 294 59 10 chr6 124692501 124692603 -64586951 - L2 LINE L2 -3 3269 3163 2286 111 3 0 chr6 124692661 124692959 -64586595 - AluSq SINE Alu -14 299 1 1792 134 33 40 chr6 124693597 124693730 -64585824 + AluSx SINE Alu 1 133 -179 2145 130 10 0 chr6 124693730 124694023 -64585531 + AluSx SINE Alu 1 296 -16 1792 134 33 40 chr6 124694023 124694188 -64585366 + AluSx SINE Alu 133 297 -15 184 194 0 0 chr6 124694214 124694250 -64585304 + L2 LINE L2 3270 3305 -8 263 219 0 24 chr6 124694250 124694332 -64585222 + (TATG)n Simple_repeat Simple_repeat 4 83 0 225 299 42 96 chr6 124695015 124695399 -64584155 + L1MC4 LINE L1 7606 7968 -74 1727 174 3 3 chr6 124695528 124695810 -64583744 + AluJo SINE Alu 1 282 -30 180 269 128 39 chr6 124696102 124696180 -64583374 + L2 LINE L2 3207 3291 -22 23 54 0 0 chr6 124696281 124696318 -64583236 + AT_rich Low_complexity Low_complexity 1 37 0 22 70 0 0 chr6 124696552 124696595 -64582959 + AT_rich Low_complexity Low_complexity 1 43 0 1633 158 0 38 chr6 124696599 124696738 -64582816 + AluJo SINE Alu 1 144 -168 2445 74 0 16 chr6 124696738 124697048 -64582506 + AluY SINE Alu 1 305 -6 207 0 0 0 chr6 124697048 124697071 -64582483 + (TA)n Simple_repeat Simple_repeat 1 23 0 1633 158 0 38 chr6 124697071 124697196 -64582358 + AluJo SINE Alu 142 256 -56 235 203 17 0 chr6 124697196 124697255 -64582299 + FLAM_A SINE Alu 71 130 -3 836 201 18 112 chr6 124697671 124697733 -64581821 - MIR SINE MIR 0 262 196 2176 136 0 3 chr6 124697733 124698041 -64581513 + AluSx SINE Alu 1 307 -5 836 201 18 112 chr6 124698041 124698065 -64581489 - MIR SINE MIR -66 196 171 1814 172 3 3 chr6 124698065 124698350 -64581204 + AluJb SINE Alu 1 285 -27 836 201 18 112 chr6 124698350 124698540 -64581014 - MIR SINE MIR -91 171 11 680 179 8 15 chr6 124698732 124698866 -64580688 - FLAM_A SINE Alu 0 133 1 527 327 180 14 chr6 124698885 124699301 -64580253 - L2 LINE L2 -644 2670 2186 288 319 83 38 chr6 124700144 124700301 -64579253 + MIR SINE MIR 93 256 -6 180 309 0 86 chr6 124700649 124700730 -64578824 - L2 LINE L2 -45 3227 3154 4266 179 47 50 chr6 124700948 124701034 -64578520 + L1MA5 LINE L1 4030 4115 -2185 2246 100 7 0 chr6 124701034 124701334 -64578220 - AluSx SINE Alu -10 302 1 4266 179 47 50 chr6 124701334 124702288 -64577266 + L1MA5 LINE L1 4115 5071 -1229 2039 127 3 0 chr6 124702288 124702603 -64576951 + AluSq SINE Alu 1 316 0 4266 179 47 50 chr6 124702603 124702756 -64576798 + L1MA5 LINE L1 5071 5223 -1077 1286 194 151 0 chr6 124702756 124703014 -64576540 + AluJo SINE Alu 2 298 -4 2342 81 0 14 chr6 124703016 124703313 -64576241 + AluSc SINE Alu 1 293 -16 4266 179 47 50 chr6 124703313 124703912 -64575642 + L1MA5 LINE L1 5224 5824 -476 2034 140 0 10 chr6 124703912 124704220 -64575334 + AluSx SINE Alu 1 305 -7 4266 179 47 50 chr6 124704220 124704339 -64575215 + L1MA5 LINE L1 5824 5942 -358 863 154 0 0 chr6 124704339 124704469 -64575085 + AluJo/FLAM SINE Alu 3 132 -170 2091 121 7 10 chr6 124704472 124704789 -64574765 + AluSx SINE Alu 1 312 0 4266 179 47 50 chr6 124704789 124704955 -64574599 + L1MA5 LINE L1 5944 6111 -189 706 93 0 0 chr6 124704955 124705052 -64574502 + AluS SINE Alu 1 97 -216 1623 122 0 5 chr6 124705053 124705275 -64574279 - AluSx SINE Alu -91 221 1 1121 74 6 6 chr6 124705277 124705440 -64574114 + L1MA5 LINE L1 6135 6297 -3 5388 138 32 52 chr6 124705446 124706490 -64573064 + L1MC2 LINE L1 5128 6192 -152 2296 105 7 7 chr6 124706490 124706795 -64572759 + AluSx SINE Alu 1 305 -7 5388 138 32 52 chr6 124706795 124706902 -64572652 + L1MC2 LINE L1 6192 6236 -108 2293 105 0 0 chr6 124706902 124707219 -64572335 + AluSx SINE Alu 1 317 0 5388 138 32 52 chr6 124707219 124707321 -64572233 + L1MC2 LINE L1 6236 6339 -5 2498 93 8 8 chr6 124707860 124708215 -64571339 - THE1A LTR MaLR 0 355 1 9505 86 31 0 chr6 124708215 124709750 -64569804 - THE1A-int LTR MaLR 0 1580 1 2512 109 8 17 chr6 124709750 124710108 -64569446 - THE1A LTR MaLR 0 355 1 1367 198 8 0 chr6 124710275 124710527 -64569027 + AluJo SINE Alu 46 299 -13 901 152 0 0 chr6 124710554 124710686 -64568868 + FLAM_C SINE Alu 2 133 0 2019 82 0 0 chr6 124710736 124710979 -64568575 + AluSc SINE Alu 53 295 -14 622 102 20 20 chr6 124711908 124712006 -64567548 - Tigger7 DNA MER2_type 0 2487 2390 * 1236 183 68 40 chr6 124712004 124712255 -64567299 - Tigger7 DNA MER2_type -2220 267 10 1851 172 3 0 chr6 124712287 124712583 -64566971 + AluJb SINE Alu 1 297 -15 2447 85 3 0 chr6 124712585 124712891 -64566663 + AluSc SINE Alu 1 307 -2 288 346 50 0 chr6 124713481 124713582 -64565972 + MIR SINE MIR 11 116 -146 2274 116 0 0 chr6 124713766 124714077 -64565477 + AluSq SINE Alu 1 311 -2 718 215 146 5 chr6 124714456 124714661 -64564893 - MIR SINE MIR -17 245 12 4076 155 28 38 chr6 124715029 124715786 -64563768 + L1MB3 LINE L1 5434 6182 -1 540 275 177 51 chr6 124716257 124716613 -64562941 + MLT1J LTR MaLR 1 401 -110 300 268 102 141 chr6 124716859 124717213 -64562341 + L2 LINE L2 2932 3271 -1 928 148 0 0 chr6 124717253 124717388 -64562166 + AluJo SINE Alu 1 135 -177 2293 96 7 13 chr6 124717422 124717557 -64561997 + AluSx SINE Alu 1 135 -177 2239 116 0 3 chr6 124717557 124717860 -64561694 + AluSc SINE Alu 1 302 -7 2293 96 7 13 chr6 124717860 124718027 -64561527 + AluSx SINE Alu 135 301 -11 32 0 0 0 chr6 124718098 124718130 -64561424 + AT_rich Low_complexity Low_complexity 1 32 0 283 156 0 0 chr6 124718287 124718332 -64561222 - L2 LINE L2 -11 3302 3258 2599 162 33 5 chr6 124718696 124719116 -64560438 - MSTB1 LTR MaLR 0 432 1 1718 176 27 3 chr6 124719180 124719476 -64560078 + AluJb SINE Alu 1 303 -9 426 240 85 16 chr6 124720177 124720306 -64559248 + L1ME4a LINE L1 5984 6121 0 2216 131 0 0 chr6 124720975 124721280 -64558274 + AluSx SINE Alu 1 305 -7 4171 161 65 49 chr6 124721288 124721497 -64558057 + L1MB7 LINE L1 5004 5208 -976 2281 118 3 0 chr6 124721497 124721802 -64557752 + AluSx SINE Alu 1 306 -6 4171 161 65 49 chr6 124721802 124722693 -64556861 + L1MB7 LINE L1 5208 6119 -65 180 0 0 0 chr6 124722694 124722714 -64556840 + (A)n Simple_repeat Simple_repeat 1 20 0 15009 128 27 37 chr6 124722883 124723318 -64556236 - Tigger2 DNA MER2_type 0 2718 2280 2171 122 3 0 chr6 124723318 124723629 -64555925 + AluSp SINE Alu 1 312 -1 15009 128 27 37 chr6 124723629 124724709 -64554845 - Tigger2 DNA MER2_type -438 2280 1191 2195 119 0 7 chr6 124724709 124725012 -64554542 + AluSx SINE Alu 1 301 -11 15009 128 27 37 chr6 124725012 124725044 -64554510 - Tigger2 DNA MER2_type -1527 1191 1160 211 0 88 0 chr6 124725044 124725078 -64554476 + T-rich Low_complexity Low_complexity 1 37 0 1546 164 29 15 chr6 124725087 124725361 -64554193 - AluJb SINE Alu -33 279 2 15009 128 27 37 chr6 124725361 124725452 -64554102 - Tigger2 DNA MER2_type -1566 1152 1062 2303 111 0 0 chr6 124725452 124725759 -64553795 - AluSx SINE Alu -5 307 1 1760 178 16 7 chr6 124725768 124726077 -64553477 - AluJo SINE Alu 0 312 1 15009 128 27 37 chr6 124726077 124726905 -64552649 - Tigger2 DNA MER2_type -1664 1054 254 2236 101 3 0 chr6 124726905 124727191 -64552363 - AluSc SINE Alu -17 292 6 774 174 38 23 chr6 124727196 124727328 -64552226 - AluJb SINE Alu -177 135 2 1580 147 15 0 chr6 124727329 124727588 -64551966 - Tigger2 DNA MER2_type -2455 263 1 2054 142 3 0 chr6 124727873 124728184 -64551370 + AluSx SINE Alu 1 312 0 313 232 127 14 chr6 124728357 124728499 -64551055 + L1ME LINE L1 5663 5820 -301 2410 78 0 0 chr6 124728509 124728803 -64550751 + AluY SINE Alu 1 294 -17 186 71 0 0 chr6 124728804 124728832 -64550722 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 1420 146 112 70 chr6 124729278 124729565 -64549989 - AluJo SINE Alu -13 299 1 2391 88 0 13 chr6 124729583 124729888 -64549666 - AluSc SINE Alu -8 301 1 25 0 0 0 chr6 124729889 124729914 -64549640 + AT_rich Low_complexity Low_complexity 1 25 0 1699 63 4 95 chr6 124730029 124730281 -64549273 - AluSx SINE Alu -38 274 46 459 258 39 32 chr6 124730520 124730683 -64548871 - MIR SINE MIR -56 206 43 344 301 119 38 chr6 124731363 124731599 -64547955 + MLT1J LTR MaLR 224 478 -33 2071 110 7 3 chr6 124731658 124731964 -64547590 - AluSx SINE Alu 0 307 1 2317 78 3 10 chr6 124732026 124732322 -64547232 - AluSc SINE Alu -15 294 1 1811 167 0 3 chr6 124732597 124732890 -64546664 - AluJb SINE Alu -20 292 1 617 293 60 26 chr6 124733146 124733498 -64546056 + L1ME4a LINE L1 5504 5867 -254 636 239 48 0 chr6 124733506 124733673 -64545881 - MER119 DNA MER1_type -1 582 408 2069 102 4 4 chr6 124733677 124733952 -64545602 + AluSc SINE Alu 2 276 -33 225 94 0 0 chr6 124733952 124733984 -64545570 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1452 207 19 4 chr6 124733990 124734261 -64545293 + AluJb SINE Alu 1 275 -37 207 0 0 0 chr6 124734266 124734289 -64545265 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2233 107 3 7 chr6 124734346 124734646 -64544908 + AluSx SINE Alu 1 299 -13 2353 97 0 0 chr6 124734679 124734978 -64544576 + AluSg SINE Alu 1 299 -11 340 146 0 37 chr6 124735118 124735200 -64544354 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 2480 87 0 0 chr6 124735322 124735634 -64543920 + AluSx SINE Alu 1 312 0 414 259 99 48 chr6 124735899 124735962 -64543592 + HAL1b LINE L1 427 485 -863 2206 119 3 3 chr6 124735962 124736273 -64543281 + AluSq SINE Alu 1 311 -2 414 259 99 48 chr6 124736273 124736480 -64543074 + HAL1b LINE L1 485 631 -717 1933 161 3 7 chr6 124736480 124736790 -64542764 + AluJb SINE Alu 1 309 -3 414 259 99 48 chr6 124736790 124736830 -64542724 + HAL1b LINE L1 631 667 -681 1069 137 19 95 chr6 124736966 124737177 -64542377 + MER2 DNA MER2_type 1 195 -150 1678 182 3 26 chr6 124737214 124737522 -64542032 - AluJb SINE Alu -11 301 1 407 221 0 0 chr6 124737523 124737591 -64541963 + MER2 DNA MER2_type 278 345 0 5082 181 8 1 chr6 124737848 124738807 -64540747 + L1 LINE L1 3414 4379 -1767 1848 164 0 3 chr6 124738833 124739120 -64540434 + AluJo SINE Alu 13 298 -14 2319 106 0 0 chr6 124739127 124739430 -64540124 - AluY SINE Alu -8 303 1 5238 127 22 28 chr6 124739453 124740327 -64539227 + L1PA16 LINE L1 5293 6161 -5 432 226 0 82 chr6 124740491 124740650 -64538904 + HAL1 LINE L1 2250 2395 -112 2433 70 0 0 chr6 124740700 124740998 -64538556 - AluY SINE Alu -13 298 1 1745 184 13 13 chr6 124741303 124741613 -64537941 + AluJb SINE Alu 1 310 -2 2253 78 10 26 chr6 124741958 124742265 -64537289 - AluSg SINE Alu -8 302 1 2500 47 0 3 chr6 124742294 124742591 -64536963 + AluY SINE Alu 2 297 -14 809 201 8 0 chr6 124743111 124743245 -64536309 + MER8 DNA MER2_type 6 140 -99 395 138 0 0 chr6 124743244 124743302 -64536252 - Tigger2 DNA MER2_type -2660 58 1 * 24 32 0 0 chr6 124743369 124743400 -64536154 + AT_rich Low_complexity Low_complexity 1 31 0 554 133 124 19 chr6 124743505 124743610 -64535944 + AluSp/q SINE Alu 185 300 -13 2203 107 3 3 chr6 124743677 124743975 -64535579 + AluSq SINE Alu 1 298 -15 375 239 68 8 chr6 124744105 124744222 -64535332 + L1MC/D LINE L1 5632 5755 -2053 2105 131 3 10 chr6 124744315 124744628 -64534926 + AluSx SINE Alu 1 311 -1 262 193 12 31 chr6 124744637 124744902 -64534652 + AluJ SINE Alu 1 237 -65 1970 141 7 10 chr6 124745074 124745380 -64534174 - AluSx SINE Alu -7 305 1 778 138 15 46 chr6 124745418 124745548 -64534006 - FRAM SINE Alu -7 169 44 582 183 22 66 chr6 124745819 124745956 -64533598 - MER3 DNA MER1_type -78 131 1 1076 209 45 27 chr6 124745964 124746184 -64533370 + MER58A DNA MER1_type 1 224 0 2302 75 7 29 chr6 124746544 124746850 -64532704 + AluY SINE Alu 1 299 -12 1636 159 29 36 chr6 124746852 124747160 -64532394 + AluJo SINE Alu 1 306 -6 2370 93 7 0 chr6 124748112 124748422 -64531132 + AluSp SINE Alu 1 312 -1 380 274 36 8 chr6 124748625 124748751 -64530803 + MIR3 SINE MIR 24 165 -43 1045 91 42 0 chr6 124749024 124749167 -64530387 - AluSq/x SINE Alu -163 149 1 538 162 216 18 chr6 124749369 124749480 -64530074 + FLAM_C SINE Alu 1 133 0 845 164 0 15 chr6 124749535 124749669 -64529885 + FLAM_C SINE Alu 1 132 -11 2464 57 0 7 chr6 124749744 124750041 -64529513 - AluY SINE Alu -16 295 1 189 0 0 0 chr6 124750432 124750453 -64529101 + (A)n Simple_repeat Simple_repeat 1 21 0 34 0 0 0 chr6 124752861 124752895 -64526659 + GC_rich Low_complexity Low_complexity 1 34 0 207 69 0 0 chr6 124752943 124752972 -64526582 + (TCC)n Simple_repeat Simple_repeat 1 29 0 709 222 73 78 chr6 124754003 124754380 -64525174 + MER34C LTR ERV1 1 486 -222 718 168 16 0 chr6 124754381 124754506 -64525048 - FLAM_A SINE Alu -6 127 1 473 214 159 39 chr6 124754506 124754688 -64524866 + LTR48 LTR ERV1 581 784 -3 2096 124 0 3 chr6 124754947 124755237 -64524317 + AluSg SINE Alu 1 289 -21 180 340 170 27 chr6 124755275 124755463 -64524091 - L2 LINE L2 -40 3232 3018 393 367 86 66 chr6 124755571 124755779 -64523775 - L2 LINE L2 -349 2965 2763 2882 100 27 36 chr6 124755779 124756139 -64523415 - LTR56 LTR ERV1 0 445 87 1909 127 11 0 chr6 124756139 124756444 -64523110 - AluSx SINE Alu 0 321 14 2882 100 27 36 chr6 124756444 124756531 -64523023 - LTR56 LTR ERV1 -358 87 1 393 367 86 66 chr6 124756531 124756695 -64522859 - L2 LINE L2 -551 2763 2604 2221 112 3 0 chr6 124756695 124757000 -64522554 + AluSp SINE Alu 1 306 -7 393 367 86 66 chr6 124757000 124757275 -64522279 - L2 LINE L2 -710 2604 2304 2935 168 37 26 chr6 124757278 124757844 -64521710 + MER41B LTR ERV1 1 572 -63 2174 122 3 3 chr6 124757844 124758156 -64521398 - AluSp SINE Alu -1 312 1 2374 142 26 26 chr6 124758156 124758239 -64521315 - LTR48B LTR ERV1 -227 417 335 2057 117 0 52 chr6 124758239 124758563 -64520991 + AluSx SINE Alu 1 307 -5 2374 142 26 26 chr6 124758563 124758896 -64520658 - LTR48B LTR ERV1 -308 336 1 2180 98 3 52 chr6 124758936 124759262 -64520292 + AluSg SINE Alu 1 310 0 180 0 0 0 chr6 124759353 124759373 -64520181 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 5001 169 40 116 chr6 124759375 124759710 -64519844 + L1 LINE L1 2929 3288 -2858 411 112 2 2 chr6 124759710 124759781 -64519773 + Alu SINE Alu 2 55 -258 344 194 0 0 chr6 124759750 124759817 -64519737 + AluSp/q SINE Alu 208 274 -29 * 5001 169 40 116 chr6 124759781 124760452 -64519102 + L1 LINE L1 3288 3867 -2279 2236 110 3 3 chr6 124760452 124760743 -64518811 + AluSp SINE Alu 1 291 -22 5001 169 40 116 chr6 124760743 124761215 -64518339 + L1 LINE L1 3867 4373 -1773 735 203 16 0 chr6 124761369 124761551 -64518003 + L1 LINE L1 4369 4553 -1593 4341 115 5 8 chr6 124761552 124762194 -64517360 + L1PB3 LINE L1 5508 6147 -7 27 0 0 0 chr6 124762299 124762326 -64517228 + AT_rich Low_complexity Low_complexity 1 27 0 324 258 21 0 chr6 124762463 124762560 -64516994 - MIR SINE MIR -60 202 104 1123 178 89 89 chr6 124762645 124762983 -64516571 - MER44D DNA MER2_type -1 608 1 1851 138 24 14 chr6 124763508 124763804 -64515750 + AluJo SINE Alu 4 302 -10 860 88 0 0 chr6 124763804 124763918 -64515636 + AluSg/x SINE Alu 194 307 -3 1562 221 50 50 chr6 124764013 124764299 -64515255 - MLT1C LTR MaLR 0 467 179 2326 103 0 3 chr6 124764299 124764611 -64514943 - AluSq SINE Alu -2 311 1 1562 221 50 50 chr6 124764611 124764786 -64514768 - MLT1C LTR MaLR -287 180 6 780 159 15 0 chr6 124764924 124765056 -64514498 - FLAM_C SINE Alu -3 140 7 2340 100 0 0 chr6 124765102 124765402 -64514152 + AluSq SINE Alu 1 300 -13 2189 118 3 10 chr6 124765768 124766081 -64513473 + AluSq SINE Alu 1 311 -2 235 243 14 43 chr6 124766416 124766486 -64513068 + L2 LINE L2 3017 3084 -188 2267 97 7 0 chr6 124766509 124766797 -64512757 + AluSq SINE Alu 1 290 -23 251 243 77 95 chr6 124766834 124766869 -64512685 - HAL1 LINE L1 -909 1598 1564 1743 135 0 112 chr6 124766869 124767017 -64512537 + AluJb SINE Alu 1 91 -211 2246 61 40 4 chr6 124767017 124767294 -64512260 + AluY SINE Alu 1 287 -24 1743 135 0 112 chr6 124767294 124767485 -64512069 + AluJb SINE Alu 91 302 0 251 243 77 95 chr6 124767485 124767618 -64511936 - HAL1 LINE L1 -943 1564 1433 2170 86 4 7 chr6 124767622 124767933 -64511621 - AluSc SINE Alu 0 310 1 318 173 0 0 chr6 124767941 124767993 -64511561 - Alu SINE Alu -5 297 246 2582 143 83 7 chr6 124768002 124768423 -64511131 + MER66A LTR ERV1 26 478 0 923 146 0 40 chr6 124768439 124768590 -64510964 - AluJb SINE Alu -82 230 86 2245 108 0 3 chr6 124768777 124769073 -64510481 + AluSg SINE Alu 1 295 -15 859 174 0 0 chr6 124769076 124769214 -64510340 - FLAM_C SINE Alu -5 138 1 1819 161 0 49 chr6 124769453 124769630 -64509924 - AluJo SINE Alu -4 308 153 2166 99 31 10 chr6 124769630 124769924 -64509630 - AluSg SINE Alu -10 300 1 1819 161 0 49 chr6 124769924 124770070 -64509484 - AluJo SINE Alu -159 153 1 22 35 0 0 chr6 124770265 124770294 -64509260 + AT_rich Low_complexity Low_complexity 1 29 0 2333 99 0 10 chr6 124770428 124770740 -64508814 - AluSx SINE Alu -3 309 1 197 357 61 0 chr6 124770780 124770878 -64508676 + L2 LINE L2 3169 3272 0 22 35 0 0 chr6 124771227 124771256 -64508298 + AT_rich Low_complexity Low_complexity 1 29 0 913 133 0 0 chr6 124771351 124771479 -64508075 + AluJo SINE Alu 1 128 -184 22 0 0 0 chr6 124771484 124771506 -64508048 + AT_rich Low_complexity Low_complexity 1 22 0 1000 155 134 11 chr6 124771582 124771769 -64507785 - AluJb SINE Alu -19 293 84 594 192 128 18 chr6 124771773 124771812 -64507742 - Charlie1 DNA MER1_type -129 2632 2599 843 227 0 0 chr6 124771812 124771966 -64507588 + AluJo SINE Alu 137 290 -12 594 192 128 18 chr6 124771966 124772145 -64507409 - Charlie1 DNA MER1_type -162 2599 2390 732 203 0 8 chr6 124772162 124772290 -64507264 + FLAM_C SINE Alu 3 129 -14 2137 99 32 0 chr6 124772296 124772580 -64506974 + AluSc SINE Alu 1 293 -16 1457 138 43 74 chr6 124772582 124772641 -64506913 - Charlie1 DNA MER1_type -399 2362 2303 2657 47 0 0 chr6 124772641 124772937 -64506617 - AluY SINE Alu -15 296 1 1457 138 43 74 chr6 124772937 124773203 -64506351 - Charlie1 DNA MER1_type -458 2303 2047 2256 96 3 0 chr6 124773203 124773485 -64506069 + AluSq SINE Alu 1 283 -30 1093 88 0 7 chr6 124773510 124773657 -64505897 + AluJb SINE Alu 162 307 -5 425 307 97 0 chr6 124773682 124773858 -64505696 + L1ME LINE L1 5500 5692 -429 27 49 0 0 chr6 124773925 124773966 -64505588 + AT_rich Low_complexity Low_complexity 1 41 0 211 0 0 81 chr6 124774270 124774307 -64505247 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1493 177 15 73 chr6 124774491 124774819 -64504735 + AluJo SINE Alu 1 309 -3 751 121 23 38 chr6 124774819 124774951 -64504603 + FLAM_C SINE Alu 14 143 0 2337 117 0 0 chr6 124775052 124775361 -64504193 + AluSq SINE Alu 5 313 0 252 0 0 0 chr6 124775365 124775393 -64504161 + (TA)n Simple_repeat Simple_repeat 2 29 0 2077 133 3 3 chr6 124775400 124775702 -64503852 + AluSq SINE Alu 1 302 -11 2301 100 7 0 chr6 124775726 124776016 -64503538 + AluSx SINE Alu 1 292 -20 1842 142 3 3 chr6 124776196 124776478 -64503076 + AluSq SINE Alu 1 282 -31 1516 111 10 0 chr6 124776479 124776686 -64502868 - AluSq SINE Alu -104 209 1 206 217 22 0 chr6 124776916 124776962 -64502592 - MIR SINE MIR -6 256 210 286 206 110 0 chr6 124776978 124777051 -64502503 - MER21B LTR ERV1 -19 844 764 1205 163 0 0 chr6 124777055 124777239 -64502315 + AluSg/x SINE Alu 96 279 -31 191 35 0 35 chr6 124777242 124777271 -64502283 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1209 94 6 0 chr6 124777633 124777792 -64501762 - AluSp SINE Alu -8 305 146 2466 135 60 22 chr6 124777875 124778289 -64501265 - MER21A LTR ERV1 -126 805 376 1255 130 56 78 chr6 124778294 124778564 -64500990 - MER21A LTR ERV1 -667 264 1 1553 97 5 0 chr6 124778637 124778833 -64500721 - AluSp SINE Alu -17 296 100 3682 76 4 4 chr6 124778834 124779319 -64500235 + LTR10E LTR ERV1 1 485 -148 1978 150 0 0 chr6 124779401 124779721 -64499833 - AluSx SINE Alu 0 312 2 619 249 87 90 chr6 124779745 124779776 -64499778 + L1MEd LINE L1 496 526 -5593 1716 208 67 73 chr6 124779776 124780296 -64499258 + LTR40a LTR ERVL 1 517 -2 619 249 87 90 chr6 124780296 124780474 -64499080 + L1MEd LINE L1 526 703 -5416 2263 91 0 14 chr6 124780474 124780770 -64498784 + AluSg SINE Alu 3 294 -16 619 249 87 90 chr6 124780770 124780804 -64498750 + L1MEd LINE L1 703 736 -5383 1952 128 3 16 chr6 124780804 124781108 -64498446 + AluSq SINE Alu 5 304 -9 619 249 87 90 chr6 124781108 124781208 -64498346 + L1MEd LINE L1 736 840 -5279 1681 152 17 14 chr6 124781218 124781507 -64498047 - AluJo SINE Alu -22 290 1 682 227 21 57 chr6 124781511 124781705 -64497849 - MLT1D LTR MaLR -318 187 1 697 161 36 0 chr6 124781731 124781843 -64497711 + FLAM_C SINE Alu 3 118 -15 204 40 0 0 chr6 124781849 124781874 -64497680 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 1266 136 0 0 chr6 124781900 124782077 -64497477 - AluSx SINE Alu -135 177 1 2297 110 0 3 chr6 124782119 124782429 -64497125 + AluY SINE Alu 1 309 -2 1281 180 66 76 chr6 124782433 124782658 -64496896 - MSTB LTR MaLR -27 399 176 2290 110 3 0 chr6 124782658 124782958 -64496596 - AluSx SINE Alu -11 301 1 1281 180 66 76 chr6 124782958 124783049 -64496505 - MSTB LTR MaLR -250 176 86 370 245 132 0 chr6 124783147 124783253 -64496301 + MER45 DNA AcHobo 1 120 -920 * 1279 156 30 28 chr6 124783215 124783510 -64496044 + MLT2A2 LTR ERVL 256 453 0 1909 133 33 39 chr6 124783510 124783579 -64495975 + MER45R DNA AcHobo 628 696 -885 2182 87 18 0 chr6 124783579 124783879 -64495675 + AluSg SINE Alu 1 305 0 1909 133 33 39 chr6 124783879 124784198 -64495356 + MER45R DNA AcHobo 696 1015 -566 2160 116 0 0 chr6 124784217 124784502 -64495052 + AluSg SINE Alu 9 293 -17 444 178 28 9 chr6 124784503 124784610 -64494944 + MER45 DNA AcHobo 1473 1581 0 1171 151 52 162 chr6 124784625 124784662 -64494892 - MLT2C1 LTR ERVL -2 395 356 383 0 21 0 chr6 124784662 124784709 -64494845 + (TG)n Simple_repeat Simple_repeat 2 49 0 1171 151 52 162 chr6 124784709 124784863 -64494691 - MLT2C1 LTR ERVL -41 356 187 2614 48 0 0 chr6 124784863 124785158 -64494396 + AluY SINE Alu 1 295 -16 1171 151 52 162 chr6 124785158 124785321 -64494233 - MLT2C1 LTR ERVL -210 187 96 2390 99 0 13 chr6 124785321 124785633 -64493921 - AluSg SINE Alu -2 308 1 1171 151 52 162 chr6 124785633 124785720 -64493834 - MLT2C1 LTR ERVL -301 96 1 2108 134 10 0 chr6 124785859 124786164 -64493390 + AluSx SINE Alu 1 308 -4 1209 192 56 42 chr6 124786349 124786636 -64492918 + AluJo SINE Alu 1 291 -11 1750 166 16 23 chr6 124787358 124787665 -64491889 + AluJo SINE Alu 2 306 -6 311 358 62 28 chr6 124787874 124788053 -64491501 + ERVL LTR ERVL 537 721 -5043 314 290 90 55 chr6 124788174 124788429 -64491125 + ERVL LTR ERVL 940 1203 -4561 2344 97 0 7 chr6 124788585 124788885 -64490669 - AluSx SINE Alu -14 298 1 814 176 0 15 chr6 124788885 124789021 -64490533 - FLAM_C SINE Alu -9 134 1 225 108 0 0 chr6 124789057 124789094 -64490460 + (TTG)n Simple_repeat Simple_repeat 3 39 0 1971 147 3 0 chr6 124789096 124789381 -64490173 - AluSx SINE Alu -26 286 1 812 166 121 0 chr6 124789668 124789825 -64489729 - AluJb SINE Alu -8 304 129 2310 97 10 3 chr6 124789829 124790139 -64489415 - AluSx SINE Alu 0 312 1 189 0 0 0 chr6 124790602 124790623 -64488931 + (T)n Simple_repeat Simple_repeat 1 21 0 467 173 0 25 chr6 124790628 124790709 -64488845 + Tigger1 DNA MER2_type 2340 2418 0 1816 167 0 55 chr6 124790730 124790925 -64488629 - AluSx SINE Alu 0 312 141 2399 80 0 7 chr6 124790925 124791226 -64488328 - AluSc SINE Alu -10 299 1 1816 167 0 55 chr6 124791226 124791360 -64488194 - AluSx SINE Alu -171 141 1 2420 100 3 0 chr6 124792058 124792367 -64487187 - AluSx SINE Alu -2 310 1 585 185 118 0 chr6 124792694 124792813 -64486741 - FLAM_C SINE Alu 0 133 1 1794 179 3 0 chr6 124793418 124793715 -64485839 + AluJb SINE Alu 1 298 -14 549 169 0 0 chr6 124794050 124794139 -64485415 + U6 snRNA snRNA 16 104 -3 2173 117 3 3 chr6 124794501 124794799 -64484755 + AluSq SINE Alu 1 298 -15 2201 93 14 3 chr6 124794871 124795160 -64484394 + AluSp SINE Alu 1 292 -21 418 103 8 56 chr6 124795162 124795288 -64484266 + (TA)n Simple_repeat Simple_repeat 1 120 0 311 183 73 0 chr6 124795296 124795378 -64484176 + L1MC4 LINE L1 6616 6703 -1339 286 88 0 35 chr6 124795390 124795447 -64484107 + (TA)n Simple_repeat Simple_repeat 2 56 0 1724 163 0 31 chr6 124795472 124795761 -64483793 - AluJo SINE Alu -30 282 3 237 33 0 0 chr6 124797459 124797489 -64482065 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1954 101 12 0 chr6 124797489 124797746 -64481808 - AluSq SINE Alu -53 260 1 2199 118 0 3 chr6 124798138 124798444 -64481110 + AluSx SINE Alu 3 307 -5 357 43 0 0 chr6 124798444 124798491 -64481063 + (CA)n Simple_repeat Simple_repeat 2 48 0 1796 123 39 42 chr6 124798563 124798696 -64480858 + AluSx SINE Alu 1 133 -185 2573 60 0 0 chr6 124798696 124798994 -64480560 + AluY SINE Alu 1 298 -13 1796 123 39 42 chr6 124798994 124799179 -64480375 + AluSx SINE Alu 133 318 0 2116 122 0 28 chr6 124799179 124799499 -64480055 + AluSx SINE Alu 1 311 -1 586 186 9 0 chr6 124799512 124799625 -64479929 - HAL1 LINE L1 -933 1574 1461 1153 167 54 5 chr6 124799639 124799843 -64479711 - AluSg/x SINE Alu -12 298 85 325 243 60 124 chr6 124799857 124800090 -64479464 - HAL1 LINE L1 -1414 1093 891 2087 130 0 10 chr6 124800090 124800389 -64479165 - AluSx SINE Alu -16 296 1 325 243 60 124 chr6 124800389 124800525 -64479029 - HAL1 LINE L1 -1616 891 748 241 0 103 0 chr6 124800542 124800581 -64478973 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2396 60 0 4 chr6 124800583 124800864 -64478690 - AluY SINE Alu -31 280 1 2317 104 0 0 chr6 124800991 124801289 -64478265 - AluSx SINE Alu -14 298 1 2108 93 58 0 chr6 124801585 124801863 -64477691 - AluSq SINE Alu -19 294 1 2571 213 113 57 chr6 124802384 124803013 -64476541 + Zaphod DNA AcHobo 2 594 -3437 2122 120 20 3 chr6 124803013 124803314 -64476240 - AluSx SINE Alu -6 306 1 2571 213 113 57 chr6 124803314 124803371 -64476183 + Zaphod DNA AcHobo 594 646 -3385 2360 116 0 0 chr6 124803371 124803682 -64475872 - AluSx SINE Alu -1 311 1 2571 213 113 57 chr6 124803682 124803875 -64475679 + Zaphod DNA AcHobo 646 932 -3099 1292 171 334 32 chr6 124803944 124804429 -64475125 - LTR29 LTR ERV1 0 608 1 2305 83 7 10 chr6 124804433 124804734 -64474820 - AluSq SINE Alu -13 300 1 2243 110 3 0 chr6 124804804 124805112 -64474442 - AluSp SINE Alu -4 309 1 850 115 0 43 chr6 124805215 124805354 -64474200 - FLAM_C SINE Alu 0 133 1 587 258 41 16 chr6 124805429 124805623 -64473931 + MER63A DNA MER1_type 11 209 -1 1864 162 7 3 chr6 124805646 124805954 -64473600 + AluJb SINE Alu 1 309 -3 528 253 111 61 chr6 124805977 124806238 -64473316 + MLT1J LTR MaLR 203 476 -35 1197 235 96 147 chr6 124806371 124807621 -64471933 - L2 LINE L2 -424 2890 1705 229 97 0 0 chr6 124807933 124807964 -64471590 - U5 snRNA snRNA -85 31 1 2165 87 42 0 chr6 124808397 124808683 -64470871 + AluSx SINE Alu 1 298 -14 24 32 0 0 chr6 124810246 124810277 -64469277 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr6 124810792 124810825 -64468729 + GC_rich Low_complexity Low_complexity 1 33 0 394 224 294 0 chr6 124812849 124812992 -64466562 + MIR SINE MIR 14 198 -64 514 145 24 0 chr6 124813028 124813111 -64466443 - AluJb SINE Alu -26 286 202 270 289 144 21 chr6 124813297 124813484 -64466070 + L1M4 LINE L1 3397 3606 -2540 283 219 167 0 chr6 124813508 124813604 -64465950 - L1M4 LINE L1 -1070 5076 4965 1038 184 106 60 chr6 124814384 124814667 -64464887 + AluJb SINE Alu 1 296 -6 1506 131 31 4 chr6 124815272 124815501 -64464053 - AluSx SINE Alu -18 294 60 1303 224 114 27 chr6 124815520 124815966 -64463588 - L1 LINE L1 -814 5332 4848 1699 134 4 15 chr6 124815980 124816242 -64463312 - AluSx SINE Alu -20 292 34 1023 227 14 5 chr6 124816503 124816719 -64462835 - MER20 DNA MER1_type -1 218 1 1986 121 0 51 chr6 124816830 124817143 -64462411 + AluSx SINE Alu 1 297 -15 532 125 0 0 chr6 124817440 124817520 -64462034 - AluSg/x SINE Alu -16 293 214 872 218 35 0 chr6 124817617 124817791 -64461763 - MER58A DNA MER1_type 0 224 45 1476 180 14 21 chr6 124818153 124818436 -64461118 + AluJb SINE Alu 13 293 -19 2214 86 20 20 chr6 124818891 124819195 -64460359 - AluY SINE Alu -7 304 1 483 243 134 43 chr6 124819394 124819719 -64459835 + L1MDb LINE L1 712 1051 -5355 1266 187 16 16 chr6 124819748 124820005 -64459549 - AluJo SINE Alu -22 290 34 2103 119 17 3 chr6 124820423 124820717 -64458837 - AluSq SINE Alu -15 298 1 1179 121 0 0 chr6 124820732 124820897 -64458657 - AluSg/x SINE Alu -6 306 142 1833 87 117 8 chr6 124821280 124821544 -64458010 + AluSg1 SINE Alu 1 293 -16 2206 95 18 0 chr6 124821722 124822007 -64457547 - AluSq SINE Alu -23 290 1 2002 113 25 0 chr6 124822343 124822627 -64456927 - AluSg SINE Alu -19 291 1 2296 103 0 13 chr6 124823459 124823769 -64455785 - AluSq SINE Alu -7 306 1 464 175 155 0 chr6 124824047 124824144 -64455410 - FLAM_A SINE Alu -17 116 5 1747 177 7 13 chr6 124824511 124824810 -64454744 - AluJb SINE Alu -15 297 1 521 211 10 0 chr6 124825117 124825221 -64454333 - AluJo SINE Alu -10 302 198 * 559 168 0 30 chr6 124825220 124825321 -64454233 - AluJo SINE Alu -168 144 47 1882 128 42 17 chr6 124825769 124826057 -64453497 - AluSx SINE Alu -17 295 1 1072 96 0 18 chr6 124826517 124826683 -64452871 - L1PA13 LINE L1 -1 6162 6000 23 0 0 0 chr6 124827088 124827111 -64452443 + AT_rich Low_complexity Low_complexity 1 23 0 278 25 0 25 chr6 124829460 124829500 -64450054 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 699 253 29 0 chr6 124829984 124830154 -64449400 - FAM SINE Alu 0 175 1 1991 157 7 0 chr6 124830711 124831005 -64448549 - AluSx SINE Alu -16 296 1 446 169 9 13 chr6 124831040 124831253 -64448301 + AluJo SINE Alu 1 293 -19 2016 124 3 3 chr6 124831479 124831762 -64447792 - AluSx SINE Alu -27 285 3 2307 108 7 0 chr6 124831919 124832215 -64447339 + AluSx SINE Alu 1 298 -14 225 0 0 0 chr6 124832216 124832241 -64447313 + (TA)n Simple_repeat Simple_repeat 2 26 0 678 220 8 0 chr6 124832433 124832589 -64446965 - L1MD2 LINE L1 -349 5815 5680 819 226 201 20 chr6 124832597 124833095 -64446459 - L1MD2 LINE L1 -704 5458 4823 2072 131 10 0 chr6 124833095 124833386 -64446168 - AluSx SINE Alu -7 305 12 819 226 201 20 chr6 124833386 124833507 -64446047 - L1MD2 LINE L1 -1339 4823 4725 204 40 0 0 chr6 124833625 124833650 -64445904 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 1957 103 22 7 chr6 124833656 124833928 -64445626 - AluSq SINE Alu -37 276 1 251 189 189 11 chr6 124833932 124834027 -64445527 - L1MD2 LINE L1 -1712 4434 4323 225 182 164 0 chr6 124834077 124834132 -64445422 - L1MD2 LINE L1 -1992 4154 4091 238 260 57 101 chr6 124834295 124834367 -64445187 - L1MD2 LINE L1 -2054 4092 4018 1634 161 53 0 chr6 124834367 124834652 -64444902 - AluJb SINE Alu -12 300 1 238 260 57 101 chr6 124834652 124834806 -64444748 - L1MD2 LINE L1 -2128 4018 3876 437 52 0 0 chr6 124834900 124834958 -64444596 + MER41B LTR ERV1 490 547 -88 2162 103 3 3 chr6 124835012 124835303 -64444251 + AluSg SINE Alu 1 291 -19 263 256 93 12 chr6 124835303 124835389 -64444165 - MIR SINE MIR -159 103 11 1121 187 0 0 chr6 124835526 124835724 -64443830 - AluSg/x SINE Alu -8 302 105 385 239 47 29 chr6 124836293 124836429 -64443125 + AluJb SINE Alu 190 280 -22 576 164 29 0 chr6 124836541 124836645 -64442909 - L1MB2 LINE L1 -26 6145 6039 2164 105 14 0 chr6 124836648 124836943 -64442611 - AluSx SINE Alu -13 299 1 321 146 0 18 chr6 124836944 124836999 -64442555 + Tigger4(Zombi) DNA MER2_type 2678 2731 0 872 126 0 0 chr6 124837017 124837136 -64442418 - AluSc SINE Alu -190 119 1 2278 91 0 3 chr6 124837153 124837440 -64442114 - AluY SINE Alu -1 310 25 986 118 0 7 chr6 124837442 124837577 -64441977 - FLAM_C SINE Alu -9 134 1 223 273 25 74 chr6 124838006 124838127 -64441427 + MIR3 SINE MIR 89 203 -5 1794 148 58 0 chr6 124838201 124838492 -64441062 + AluJb SINE Alu 1 308 -4 182 136 68 0 chr6 124838724 124838768 -64440786 + L2 LINE L2 2915 2961 -311 2275 106 30 0 chr6 124839050 124839351 -64440203 + AluSx SINE Alu 2 311 -1 2085 121 7 13 chr6 124839361 124839668 -64439886 + AluSx SINE Alu 1 305 -7 281 246 0 15 chr6 124839691 124839756 -64439798 - MLT1J LTR MaLR -344 167 104 1643 186 16 23 chr6 124839877 124840184 -64439370 + AluJo SINE Alu 1 305 -7 633 150 0 88 chr6 124840184 124840322 -64439232 - AluJb SINE Alu -184 128 2 351 298 78 31 chr6 124840391 124840582 -64438972 - MIR SINE MIR 0 262 63 1923 162 0 7 chr6 124840585 124840888 -64438666 - AluJo SINE Alu -11 301 1 2192 127 16 0 chr6 124841126 124841433 -64438121 - AluSx SINE Alu 0 312 1 331 211 37 170 chr6 124841622 124841695 -64437859 + MER5A DNA MER1_type 1 82 -107 2259 103 3 10 chr6 124841695 124841997 -64437557 + AluSp SINE Alu 1 300 -13 491 0 17 0 chr6 124841997 124842056 -64437498 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 1727 164 25 0 chr6 124842056 124842330 -64437224 + AluJb SINE Alu 16 296 -16 331 211 37 170 chr6 124842330 124842472 -64437082 + MER5A DNA MER1_type 79 189 0 2463 73 7 0 chr6 124842513 124842813 -64436741 + AluSp SINE Alu 1 302 -11 827 264 42 0 chr6 124842837 124843076 -64436478 + MIR SINE MIR 13 261 -1 2268 96 3 3 chr6 124843123 124843415 -64436139 + AluSx SINE Alu 3 294 -18 350 312 51 14 chr6 124844202 124844340 -64435214 - MIR3 SINE MIR -13 195 53 1802 141 0 62 chr6 124844500 124844614 -64434940 + AluJb SINE Alu 1 121 -191 2381 82 0 0 chr6 124844614 124844908 -64434646 - AluY SINE Alu -17 294 1 1802 141 0 62 chr6 124844908 124845123 -64434431 + AluJb SINE Alu 121 312 0 540 217 28 0 chr6 124845293 124845399 -64434155 - FLAM_A SINE Alu -20 122 14 417 229 5 133 chr6 124845564 124845782 -64433772 - L1MC4 LINE L1 -8 8034 7845 2221 74 29 35 chr6 124845961 124846273 -64433281 + AluSg SINE Alu 1 310 0 1373 166 83 40 chr6 124846324 124846601 -64432953 + AluJo SINE Alu 1 289 -23 2238 110 3 19 chr6 124846858 124847175 -64432379 - AluSq SINE Alu -1 312 1 2216 117 3 0 chr6 124847701 124847999 -64431555 + AluSg SINE Alu 3 301 -9 259 95 0 0 chr6 124848198 124848240 -64431314 - AluJb SINE Alu 0 301 260 1584 148 0 57 chr6 124848341 124848624 -64430930 - AluJb SINE Alu -45 267 1 443 144 11 14 chr6 124848686 124848783 -64430771 + L1ME1 LINE L1 5389 5482 -692 1952 147 72 44 chr6 124848787 124849154 -64430400 + L1MB8 LINE L1 5730 6085 -93 2299 106 0 3 chr6 124849154 124849457 -64430097 - AluSq SINE Alu -11 302 1 1906 167 3 0 chr6 124849458 124849763 -64429791 - AluSx SINE Alu -6 306 1 1952 147 72 44 chr6 124849763 124849823 -64429731 + L1MB8 LINE L1 6084 6171 -7 1438 173 85 53 chr6 124849831 124849938 -64429616 + L1ME1 LINE L1 5474 5576 -590 2278 89 3 10 chr6 124849938 124850240 -64429314 + AluSx SINE Alu 1 300 -12 1438 173 85 53 chr6 124850240 124850473 -64429081 + L1ME1 LINE L1 5576 5825 -341 522 293 15 42 chr6 124850254 124850513 -64429041 + L1PA8A LINE L1 5612 5863 -268 * 269 282 28 0 chr6 124850487 124850558 -64428996 + L1MD2 LINE L1 6007 6079 -280 * 798 150 0 23 chr6 124850585 124850718 -64428836 + FLAM_C SINE Alu 4 133 0 430 179 13 0 chr6 124850746 124850824 -64428730 + AluJb SINE Alu 208 286 -26 1984 74 93 0 chr6 124850835 124851093 -64428461 + AluSq SINE Alu 17 298 -15 1083 148 0 0 chr6 124851095 124851250 -64428304 + AluSp SINE Alu 133 287 -26 734 196 23 82 chr6 124851257 124851381 -64428173 - L1MD2 LINE L1 -59 6300 6170 1938 127 7 7 chr6 124851381 124851664 -64427890 - AluSx SINE Alu -18 294 12 734 196 23 82 chr6 124851664 124851702 -64427852 - L1MD2 LINE L1 -189 6170 6152 2387 96 3 0 chr6 124851702 124852004 -64427550 - AluSp SINE Alu -10 303 1 734 196 23 82 chr6 124852004 124852059 -64427495 - L1MD2 LINE L1 -207 6152 6095 587 192 39 31 chr6 124852064 124852194 -64427360 + FLAM_C SINE Alu 3 133 0 589 209 74 18 chr6 124852196 124852359 -64427195 + L1MA10 LINE L1 6163 6334 0 2059 75 60 4 chr6 124852364 124852658 -64426896 + AluY SINE Alu 1 309 0 261 319 37 37 chr6 124852906 124853041 -64426513 + L2 LINE L2 3169 3303 -10 526 83 0 0 chr6 124853314 124853415 -64426139 - FLAM_A SINE Alu 0 145 45 185 156 0 22 chr6 124853758 124853803 -64425751 + GA-rich Low_complexity Low_complexity 1 44 0 1383 116 0 82 chr6 124853934 124854166 -64425388 + AluSq SINE Alu 99 311 -2 719 261 50 25 chr6 124854338 124854579 -64424975 - MIR SINE MIR -1 261 15 1906 138 24 0 chr6 124854824 124855115 -64424439 - AluJo SINE Alu -14 298 1 365 233 0 92 chr6 124855125 124855245 -64424309 - L2 LINE L2 -21 3292 3184 2120 131 7 0 chr6 124855496 124855793 -64423761 - AluSx SINE Alu -13 299 1 2336 92 7 0 chr6 124855828 124856121 -64423433 + AluSp SINE Alu 2 296 -17 252 0 0 0 chr6 124856152 124856180 -64423374 + (CA)n Simple_repeat Simple_repeat 2 29 0 1260 105 29 0 chr6 124856926 124857098 -64422456 - AluSq SINE Alu -20 293 117 370 161 0 0 chr6 124857194 124857256 -64422298 - Alu SINE Alu 0 300 239 1111 90 0 0 chr6 124858447 124858580 -64420974 - AluSg1 SINE Alu -176 133 1 1364 153 118 16 chr6 124858594 124858848 -64420706 - AluJo SINE Alu -24 288 9 3174 113 15 13 chr6 124858880 124859357 -64420197 - MER9 LTR ERVK 0 511 34 21615 81 6 19 chr6 124859364 124864096 -64415458 - HERVK9 LTR ERVK 0 8032 1348 4433 97 8 19 chr6 124864097 124864715 -64414839 - HERVK9 LTR ERVK -5305 611 1 3359 100 34 8 chr6 124864715 124865213 -64414341 - MER9 LTR ERVK 0 511 1 216 0 0 0 chr6 124865229 124865253 -64414301 + (TA)n Simple_repeat Simple_repeat 1 24 0 2108 113 61 0 chr6 124865253 124865546 -64414008 - AluSq SINE Alu -2 311 1 596 206 75 19 chr6 124865551 124865711 -64413843 - L1MA10 LINE L1 0 6334 6166 587 192 39 31 chr6 124865714 124865844 -64413710 - FLAM_C SINE Alu 0 133 3 235 54 108 0 chr6 124865849 124865886 -64413668 + L1MD2 LINE L1 6095 6135 -224 1955 102 26 0 chr6 124865996 124866260 -64413294 + AluSp SINE Alu 33 303 -10 325 172 0 0 chr6 124866260 124866318 -64413236 - Tigger4(Zombi) DNA MER2_type -2673 58 1 655 100 0 11 chr6 124866402 124866492 -64413062 - FLAM_A SINE Alu -26 116 28 1822 157 13 35 chr6 124866871 124867045 -64412509 - AluJb SINE Alu -1 311 146 2394 97 3 0 chr6 124867045 124867344 -64412210 - AluSp SINE Alu -13 300 1 1822 157 13 35 chr6 124867344 124867487 -64412067 - AluJb SINE Alu -166 146 1 186 43 0 0 chr6 124867497 124867520 -64412034 + (A)n Simple_repeat Simple_repeat 1 23 0 2271 84 3 0 chr6 124867521 124867808 -64411746 + AluSp SINE Alu 2 289 -24 2248 112 3 25 chr6 124867819 124868133 -64411421 + AluSx SINE Alu 1 307 -5 1253 172 5 0 chr6 124868176 124868374 -64411180 + AluJb SINE Alu 87 285 -27 809 206 36 0 chr6 124868385 124868550 -64411004 - MER5A DNA MER1_type -18 171 1 206 111 56 0 chr6 124868957 124868993 -64410561 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 2130 98 0 4 chr6 124868993 124869270 -64410284 - AluSx SINE Alu -36 276 1 1816 178 13 0 chr6 124869319 124869622 -64409932 - AluJb SINE Alu -5 307 1 22 0 0 0 chr6 124869714 124869736 -64409818 + AT_rich Low_complexity Low_complexity 1 22 0 2159 103 41 0 chr6 124869776 124870067 -64409487 + AluSx SINE Alu 1 303 -9 2342 97 3 10 chr6 124870127 124870436 -64409118 + AluSx SINE Alu 5 311 -1 1696 94 9 5 chr6 124870442 124870665 -64408889 - AluSx SINE Alu -83 229 6 965 144 10 85 chr6 124870834 124870909 -64408645 + MER5A DNA MER1_type 1 80 -109 1649 136 106 7 chr6 124870909 124871182 -64408372 + AluSx SINE Alu 1 300 -12 965 144 10 85 chr6 124871182 124871307 -64408247 + MER5A DNA MER1_type 80 186 -3 1722 173 0 16 chr6 124871431 124871738 -64407816 + AluJo SINE Alu 11 312 0 751 122 0 0 chr6 124871867 124871974 -64407580 - AluSc SINE Alu -12 297 191 2081 131 0 13 chr6 124872108 124872431 -64407123 + AluSx SINE Alu 1 312 0 1063 139 42 0 chr6 124872434 124872599 -64406955 + AluJo/FRAM SINE Alu 129 300 -12 2325 77 13 13 chr6 124873315 124873478 -64406076 - AluSc SINE Alu -11 298 133 2433 71 40 0 chr6 124873478 124873774 -64405780 - AluY SINE Alu -3 308 1 2325 77 13 13 chr6 124873774 124873908 -64405646 - AluSc SINE Alu -175 134 1 2190 110 127 127 chr6 124874227 124874746 -64404808 + LTR44 LTR ERV1 1 519 0 722 115 58 77 chr6 124874995 124875151 -64404403 - L1MB7 LINE L1 -5 6179 6027 1028 104 7 0 chr6 124875152 124875306 -64404248 + MER41A LTR ERV1 400 554 0 492 148 23 23 chr6 124875306 124875394 -64404160 + MER41A-int LTR ERV1 1 88 -5858 * 952 92 0 0 chr6 124875389 124875520 -64404034 + MER41B-int LTR ERV1 4639 4769 -1177 * 1659 94 0 0 chr6 124875518 124875731 -64403823 + MER41B-int LTR ERV1 5730 5942 -4 3829 93 7 27 chr6 124875733 124876258 -64403296 + MER41B LTR ERV1 1 516 -119 2292 102 3 0 chr6 124876258 124876552 -64403002 - AluSq SINE Alu -18 295 1 3829 93 7 27 chr6 124876552 124876584 -64402970 + MER41B LTR ERV1 516 547 -88 935 133 0 107 chr6 124876598 124876690 -64402864 - L1MB7 LINE L1 -145 6039 5977 792 144 0 0 chr6 124876690 124876808 -64402746 - FLAM_C SINE Alu -15 118 1 935 133 0 107 chr6 124876808 124876911 -64402643 - L1MB7 LINE L1 -207 5977 5865 1723 173 0 20 chr6 124876911 124877212 -64402342 - AluJo SINE Alu -17 295 1 2261 104 7 13 chr6 124877535 124877844 -64401710 + AluSx SINE Alu 1 307 -5 2046 119 54 0 chr6 124877959 124878254 -64401300 + AluSx SINE Alu 1 311 -1 2292 84 0 3 chr6 124878598 124878884 -64400670 - AluY SINE Alu -24 287 3 971 169 0 6 chr6 124879163 124879341 -64400213 + FRAM SINE Alu 1 176 0 329 234 0 26 chr6 124879428 124879505 -64400049 - MIR SINE MIR -18 244 170 2353 95 0 0 chr6 124879571 124879876 -64399678 + AluSp SINE Alu 1 305 -8 1337 127 97 82 chr6 124881470 124881587 -64397967 + AluJo SINE Alu 22 136 -176 2222 78 17 3 chr6 124881587 124881881 -64397673 + AluSq SINE Alu 1 298 -15 1337 127 97 82 chr6 124881881 124882030 -64397524 + AluJo SINE Alu 136 292 -20 1919 127 19 0 chr6 124882676 124882944 -64396610 + AluSx SINE Alu 1 273 -39 955 109 66 0 chr6 124883050 124883187 -64396367 - AluSq SINE Alu -66 247 102 2044 123 31 0 chr6 124884997 124885290 -64394264 - AluSx SINE Alu -10 302 1 1514 186 7 4 chr6 124885339 124885613 -64393941 - AluJo SINE Alu -37 275 1 2371 44 55 3 chr6 124885668 124885961 -64393593 + AluY SINE Alu 1 308 -3 273 315 94 34 chr6 124887452 124887601 -64391953 + L3 LINE CR1 235 392 -1185 2283 168 40 24 chr6 124887614 124887672 -64391882 - MER65C LTR ERV1 -1 460 404 2949 160 62 49 chr6 124887672 124887777 -64391777 - LTR26E LTR ERV1 0 622 520 1960 172 0 0 chr6 124887777 124888085 -64391469 + AluSx SINE Alu 1 308 -4 2949 160 62 49 chr6 124888085 124888310 -64391244 - LTR26E LTR ERV1 -102 520 299 1425 168 66 21 chr6 124888310 124888596 -64390958 - AluJo SINE Alu -13 299 1 2949 160 62 49 chr6 124888596 124888878 -64390676 - LTR26E LTR ERV1 -323 299 1 2283 168 40 24 chr6 124888878 124889272 -64390282 - MER65C LTR ERV1 -57 404 1 2281 102 3 6 chr6 124889392 124889705 -64389849 - AluSx SINE Alu 0 312 1 227 178 123 55 chr6 124889792 124889865 -64389689 - L1ME4a LINE L1 -69 6052 5975 3415 158 18 67 chr6 124889926 124890643 -64388911 - LTR8 LTR ERV1 -8 683 2 812 176 44 0 chr6 124890644 124890780 -64388774 + FAM SINE Alu 30 171 -14 1405 191 77 18 chr6 124890783 124891056 -64388498 + AluJo SINE Alu 1 289 -23 2042 129 0 7 chr6 124891109 124891395 -64388159 + AluSx SINE Alu 1 284 -28 357 240 74 109 chr6 124891485 124891586 -64387968 - L1ME3A LINE L1 -20 6150 6056 1606 120 74 21 chr6 124891586 124891869 -64387685 + L1PA16 LINE L1 5868 6165 -1 357 240 74 109 chr6 124891869 124891942 -64387612 - L1ME3A LINE L1 -114 6056 5982 1663 166 58 0 chr6 124891960 124892238 -64387316 - AluJb SINE Alu -18 294 1 403 254 69 17 chr6 124892241 124892414 -64387140 - L1ME3A LINE L1 -232 5889 5708 2440 94 0 0 chr6 124892428 124892736 -64386818 - AluSg SINE Alu -2 308 1 351 267 56 43 chr6 124892758 124892957 -64386597 - MIR SINE MIR -50 212 17 * 447 303 49 45 chr6 124892945 124893189 -64386365 + L3 LINE CR1 433 677 -900 288 254 231 23 chr6 124893451 124893624 -64385930 + L3 LINE CR1 1022 1230 -347 27 49 0 0 chr6 124893659 124893700 -64385854 + AT_rich Low_complexity Low_complexity 1 41 0 814 161 0 0 chr6 124893700 124893818 -64385736 - FLAM_C SINE Alu -25 118 1 1787 240 56 17 chr6 124893818 124894335 -64385219 - L1ME1 LINE L1 -17 6149 5613 2308 109 0 0 chr6 124894471 124894784 -64384770 + AluSq SINE Alu 1 313 0 528 337 38 19 chr6 124894927 124895194 -64384360 + L3 LINE CR1 1194 1465 -112 2304 110 7 0 chr6 124895584 124895894 -64383660 + AluSx SINE Alu 1 312 0 2462 87 0 10 chr6 124895936 124896247 -64383307 + AluSg SINE Alu 1 308 -2 1240 207 164 0 chr6 124896311 124896567 -64382987 - AluJb SINE Alu -3 299 2 792 178 0 8 chr6 124896598 124896727 -64382827 + FLAM_A SINE Alu 1 128 -5 244 170 19 19 chr6 124896777 124896830 -64382724 + AluJo SINE Alu 84 136 -166 259 83 21 21 chr6 124896852 124896900 -64382654 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 668 153 57 8 chr6 124896911 124897035 -64382519 + FLAM_C SINE Alu 2 131 -2 32 26 0 0 chr6 124897036 124897075 -64382479 + AT_rich Low_complexity Low_complexity 1 39 0 212 328 0 0 chr6 124897209 124897230 -64382324 + GA-rich Low_complexity Low_complexity 1 21 -37 2062 120 17 7 chr6 124897230 124897531 -64382023 + AluSq SINE Alu 1 304 -9 212 328 0 0 chr6 124897531 124897567 -64381987 + GA-rich Low_complexity Low_complexity 20 58 0 1385 149 41 38 chr6 124897570 124897665 -64381889 - LTR54 LTR ERV1 -3 507 414 2398 74 0 13 chr6 124897665 124897964 -64381590 + AluSx SINE Alu 1 295 -17 1385 149 41 38 chr6 124897964 124898300 -64381254 - LTR54 LTR ERV1 -96 414 5 2466 214 17 36 chr6 124898300 124898451 -64381103 - MER65-int LTR ERV1 -384 7153 7001 2205 116 3 10 chr6 124898451 124898762 -64380792 - AluY SINE Alu -2 309 1 2466 214 17 36 chr6 124898762 124899139 -64380415 - MER65-int LTR ERV1 -536 7001 6635 256 160 0 40 chr6 124899133 124899183 -64380371 - MER65-int LTR ERV1 -653 4218 4171 * 2564 206 79 94 chr6 124899227 124899972 -64379582 - MER65-int LTR ERV1 -412 4524 3513 2319 102 3 0 chr6 124899972 124900267 -64379287 - AluSp SINE Alu -15 298 3 2564 206 79 94 chr6 124900267 124900485 -64379069 - MER65-int LTR ERV1 -1423 3513 3293 969 177 0 0 chr6 124900755 124900954 -64378600 - AluSg/x SINE Alu 0 312 137 534 191 30 54 chr6 124900958 124901135 -64378419 - L1M2 LINE L1 -656 5524 5390 5777 194 15 40 chr6 124901139 124902504 -64377050 - L1M4 LINE L1 -944 5202 3872 333 0 0 0 chr6 124902504 124902541 -64377013 + (TG)n Simple_repeat Simple_repeat 2 38 0 1498 207 36 0 chr6 124903674 124903983 -64375571 - L1M4 LINE L1 -2268 3878 3559 1182 127 27 32 chr6 124903983 124904092 -64375462 - L1MB2 LINE L1 -7 6164 6056 2205 109 7 3 chr6 124904092 124904386 -64375168 - AluSx SINE Alu -17 295 1 1182 127 27 32 chr6 124904386 124904496 -64375058 - L1MB2 LINE L1 -115 6056 5946 757 227 27 0 chr6 124904503 124904653 -64374901 - FAM SINE Alu -19 166 13 2226 151 24 5 chr6 124904657 124905034 -64374520 - L1MB2 LINE L1 -210 5961 5578 1497 226 56 29 chr6 124905063 124905293 -64374261 - L1M4 LINE L1 -2567 3579 3357 2118 109 3 3 chr6 124905293 124905603 -64373951 - AluSx SINE Alu 0 310 1 1497 226 56 29 chr6 124905603 124905857 -64373697 - L1M4 LINE L1 -2789 3357 3081 254 261 109 11 chr6 124905845 124905937 -64373617 - HAL1 LINE L1 -2377 130 30 * 2426 90 0 0 chr6 124906034 124906335 -64373219 + AluSq SINE Alu 1 301 -12 2250 110 10 0 chr6 124907264 124907572 -64371982 + AluSx SINE Alu 1 311 -1 1756 150 3 37 chr6 124907579 124907722 -64371832 + AluJb SINE Alu 1 130 -182 2436 91 0 0 chr6 124907722 124908020 -64371534 + AluSg SINE Alu 1 298 -12 1756 150 3 37 chr6 124908020 124908170 -64371384 + AluJb SINE Alu 130 284 -28 21 0 0 0 chr6 124908173 124908194 -64371360 + AT_rich Low_complexity Low_complexity 1 21 0 778 285 83 40 chr6 124908224 124908705 -64370849 - L2 LINE L2 -3 3310 2809 2003 142 9 107 chr6 124908726 124908913 -64370641 - MLT1B LTR MaLR 0 390 267 3884 95 34 92 chr6 124908913 124909586 -64369968 - MER51A LTR ERV1 0 634 1 2003 142 9 107 chr6 124909586 124909827 -64369727 - MLT1B LTR MaLR -123 267 4 896 164 0 0 chr6 124909847 124909987 -64369567 - FLAM_C SINE Alu -3 140 1 205 88 29 0 chr6 124909987 124910021 -64369533 + (TTTTTA)n Simple_repeat Simple_repeat 4 38 0 206 281 16 16 chr6 124910056 124910120 -64369434 - L2 LINE L2 -523 2791 2728 2133 118 3 22 chr6 124910164 124910479 -64369075 - AluSx SINE Alu -3 309 1 818 237 77 86 chr6 124910489 124910790 -64368764 + MLT1J LTR MaLR 47 344 -167 399 41 0 0 chr6 124910790 124910839 -64368715 + (CA)n Simple_repeat Simple_repeat 2 50 0 818 237 77 86 chr6 124910839 124911005 -64368549 + MLT1J LTR MaLR 344 510 -1 251 302 32 16 chr6 124911005 124911131 -64368423 - L2 LINE L2 -653 2661 2534 2021 129 17 0 chr6 124911261 124911548 -64368006 - AluSx SINE Alu -20 292 1 198 261 0 0 chr6 124911548 124911594 -64367960 - L2 LINE L2 -10 3262 3217 404 284 66 49 chr6 124911653 124911896 -64367658 + MER112 DNA MER1_type 1 247 -13 1929 54 25 36 chr6 124911972 124912147 -64367407 - L1MA1 LINE L1 -6 6296 6124 2203 102 0 23 chr6 124912147 124912452 -64367102 + AluSx SINE Alu 1 298 -14 1929 54 25 36 chr6 124912452 124912554 -64367000 - L1MA1 LINE L1 -178 6124 6022 193 245 0 0 chr6 124912604 124912657 -64366897 + L2 LINE L2 3185 3237 -35 341 255 20 0 chr6 124913523 124913621 -64365933 + L1MC4a LINE L1 5843 5942 -1866 610 170 0 36 chr6 124913760 124913872 -64365682 - MER2 DNA MER2_type -237 108 1 25 75 0 0 chr6 124913902 124913955 -64365599 + AT_rich Low_complexity Low_complexity 1 53 0 2357 91 7 0 chr6 124914008 124914304 -64365250 - AluSp SINE Alu -13 300 3 1234 172 0 5 chr6 124914306 124914515 -64365039 - MER4D LTR ERV1 -695 208 1 674 212 0 29 chr6 124914653 124914790 -64364764 + FLAM_A SINE Alu 1 133 0 2187 133 0 0 chr6 124915050 124915350 -64364204 - AluSx SINE Alu -12 300 1 203 303 33 16 chr6 124915501 124915623 -64363931 + L2 LINE L2 2367 2490 -824 1275 165 0 0 chr6 124916448 124916654 -64362900 + AluJo SINE Alu 101 306 -6 876 142 0 0 chr6 124916724 124916858 -64362696 + L1MA2 LINE L1 6171 6304 0 244 277 0 0 chr6 124917176 124917241 -64362313 + (CA)n Simple_repeat Simple_repeat 1 65 0 2766 77 6 0 chr6 124917509 124917862 -64361692 - THE1A LTR MaLR 0 355 1 305 175 63 16 chr6 124918272 124918335 -64361219 - MLT1B LTR MaLR 0 390 325 2058 99 45 10 chr6 124918335 124918627 -64360927 + AluSq SINE Alu 1 302 -11 918 209 0 0 chr6 124918627 124918790 -64360764 + AluJb SINE Alu 134 296 -16 1662 169 55 72 chr6 124918796 124918850 -64360704 - MLT1C LTR MaLR -50 417 364 11929 72 17 4 chr6 124918850 124919695 -64359859 - L1PA7 LINE L1 0 6154 5322 219 36 0 0 chr6 124919695 124919723 -64359831 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 11929 72 17 4 chr6 124919723 124921234 -64358320 - L1PA7 LINE L1 -832 5322 3776 1662 169 55 72 chr6 124921234 124921598 -64357956 - MLT1C LTR MaLR -103 364 6 1680 180 0 29 chr6 124921719 124922030 -64357524 - AluJb SINE Alu -10 302 1 1879 103 28 81 chr6 124923373 124923693 -64355861 - AluSx SINE Alu -9 303 1 2445 93 0 0 chr6 124923702 124924004 -64355550 - AluSc SINE Alu -7 302 1 199 167 24 0 chr6 124925010 124925052 -64354502 + L2 LINE L2 2995 3037 -235 1854 176 0 3 chr6 124925274 124925586 -64353968 - AluSx SINE Alu -1 311 1 255 133 0 0 chr6 124926215 124926260 -64353294 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 268 281 16 0 chr6 124926423 124926487 -64353067 + L2 LINE L2 3208 3272 0 21 0 0 0 chr6 124927142 124927163 -64352391 + AT_rich Low_complexity Low_complexity 1 21 0 240 163 0 0 chr6 124927489 124927532 -64352022 + CT-rich Low_complexity Low_complexity 2 44 0 2086 136 10 10 chr6 124927543 124927853 -64351701 - AluSx SINE Alu -2 310 1 31 26 0 0 chr6 124927859 124927897 -64351657 + AT_rich Low_complexity Low_complexity 1 38 0 1044 177 70 0 chr6 124927903 124928089 -64351465 + MLT1D LTR MaLR 307 505 0 846 116 16 16 chr6 124928124 124928253 -64351301 + FLAM_C SINE Alu 9 137 -6 27 29 0 0 chr6 124928257 124928291 -64351263 + AT_rich Low_complexity Low_complexity 1 34 0 1044 164 6 0 chr6 124928964 124929135 -64350419 - FRAM SINE Alu -1 175 4 853 300 137 26 chr6 124929178 124929591 -64349963 - L3 LINE CR1 -108 1469 982 951 206 72 0 chr6 124929591 124929785 -64349769 + MER3 DNA MER1_type 1 208 -1 853 300 137 26 chr6 124929785 124929904 -64349650 - L3 LINE CR1 -595 982 878 326 248 18 101 chr6 124931450 124931510 -64348044 + MIR3 SINE MIR 101 150 -58 576 278 87 33 chr6 124931510 124931751 -64347803 - MER112 DNA MER1_type 0 256 3 326 248 18 101 chr6 124931751 124931799 -64347755 + MIR3 SINE MIR 150 200 -8 184 339 62 0 chr6 124932057 124932122 -64347432 + L3 LINE CR1 1483 1551 -26 1464 182 36 11 chr6 124932426 124932701 -64346853 + AluJo SINE Alu 1 282 -30 283 61 0 0 chr6 124932976 124933009 -64346545 + Alu SINE Alu 12 44 -258 1554 117 14 0 chr6 124933009 124933223 -64346331 + AluSg/x SINE Alu 90 306 -4 2048 127 7 23 chr6 124933471 124933771 -64345783 + AluSq SINE Alu 1 295 -18 1982 124 40 0 chr6 124933771 124933891 -64345663 + AluSx SINE Alu 1 115 -197 189 0 0 0 chr6 124933891 124933912 -64345642 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1982 124 40 0 chr6 124933912 124934065 -64345489 + AluSx SINE Alu 115 286 -26 2338 103 7 0 chr6 124934736 124935046 -64344508 + AluSp SINE Alu 2 313 0 1357 101 29 5 chr6 124935206 124935414 -64344140 - L1PB2 LINE L1 -11 6140 5928 262 311 85 11 chr6 124935766 124935943 -64343611 + L1ME LINE L1 5298 5487 -634 372 200 0 0 chr6 124935963 124936023 -64343531 + AluS SINE Alu 2 61 -239 2834 218 61 14 chr6 124936123 124936888 -64342666 - L1M4 LINE L1 -746 5400 4600 1612 189 26 29 chr6 124936895 124937208 -64342346 - AluJo SINE Alu 0 312 1 1559 203 40 3 chr6 124937212 124937592 -64341962 - L1M4 LINE L1 -2168 3978 3585 2441 81 0 0 chr6 124937656 124937952 -64341602 - AluSg SINE Alu -14 296 1 1013 140 0 24 chr6 124938498 124938662 -64340892 + AluSq SINE Alu 33 192 -121 1652 150 114 78 chr6 124938664 124938945 -64340609 + MLT1D LTR MaLR 106 406 -99 1979 105 54 24 chr6 124938945 124939239 -64340315 - AluSg SINE Alu -7 303 1 1652 150 114 78 chr6 124939239 124939343 -64340211 + MLT1D LTR MaLR 406 505 0 1956 149 0 7 chr6 124939478 124939779 -64339775 + AluJb SINE Alu 1 299 -13 2365 79 0 3 chr6 124940223 124940514 -64339040 - AluY SINE Alu -21 290 1 2347 73 13 3 chr6 124940577 124940878 -64338676 - AluY SINE Alu -7 304 1 2098 121 3 32 chr6 124940878 124941053 -64338501 - AluJb SINE Alu -4 308 144 2653 33 0 7 chr6 124941053 124941358 -64338196 - AluYa5 SINE Alu -8 303 1 2098 121 3 32 chr6 124941358 124941497 -64338057 - AluJb SINE Alu -168 144 3 441 161 11 23 chr6 124941573 124941660 -64337894 + FLAM_C SINE Alu 33 118 -25 30 27 0 0 chr6 124941660 124941697 -64337857 + AT_rich Low_complexity Low_complexity 1 37 0 803 171 16 0 chr6 124942013 124942142 -64337412 - FLAM_C SINE Alu -12 131 1 2328 97 0 7 chr6 124942186 124942495 -64337059 + AluSx SINE Alu 1 307 -5 253 195 207 12 chr6 124942501 124942583 -64336971 - MLT1J LTR MaLR 0 511 414 1810 151 33 10 chr6 124943029 124943334 -64336220 - AluJb SINE Alu 0 312 1 315 220 110 131 chr6 124943520 124943711 -64335843 - MLT1J LTR MaLR -148 363 177 208 139 0 0 chr6 124943712 124943748 -64335806 + (T)n Simple_repeat Simple_repeat 1 36 0 354 227 13 0 chr6 124943752 124943827 -64335727 - MLT1J LTR MaLR -323 188 113 240 214 12 60 chr6 124943837 124943921 -64335633 - MLT1L LTR MaLR -535 80 1 1011 139 36 12 chr6 124943988 124944153 -64335401 + AluSp SINE Alu 133 301 -12 1746 172 21 0 chr6 124944268 124944558 -64334996 + AluJb SINE Alu 1 296 -16 322 224 13 26 chr6 124944660 124944736 -64334818 - MER116 DNA Mariner -1 79 5 465 139 28 74 chr6 124944883 124944991 -64334563 + MLT1E2 LTR MaLR 1 103 -523 2103 119 3 23 chr6 124944993 124945303 -64334251 - AluSx SINE Alu -8 304 1 1740 155 0 18 chr6 124945451 124945735 -64333819 + AluJo SINE Alu 21 299 -13 2521 70 0 0 chr6 124945738 124946036 -64333518 + AluY SINE Alu 1 298 -13 1428 254 87 48 chr6 124946036 124946066 -64333488 + MLT1E2 LTR MaLR 105 132 -494 2325 72 7 7 chr6 124946066 124946358 -64333196 + AluY SINE Alu 1 292 -19 1428 254 87 48 chr6 124946358 124946824 -64332730 + MLT1E2 LTR MaLR 132 620 -6 2333 72 24 0 chr6 124946899 124947192 -64332362 - AluY SINE Alu -11 300 1 1478 201 10 17 chr6 124947195 124947494 -64332060 - AluJo SINE Alu -15 297 1 2116 114 7 3 chr6 124948327 124948617 -64330937 - AluSx SINE Alu -19 293 3 2630 185 63 32 chr6 124948888 124949002 -64330552 + MLT1F LTR MaLR 3 112 -430 2262 111 0 10 chr6 124949002 124949300 -64330254 - AluSx SINE Alu -17 295 1 2630 185 63 32 chr6 124949300 124949709 -64329845 + MLT1F LTR MaLR 112 542 0 1693 123 3 94 chr6 124950238 124950358 -64329196 + AluSx SINE Alu 23 152 -160 2331 94 7 7 chr6 124950358 124950665 -64328889 + AluSp SINE Alu 1 307 -6 1693 123 3 94 chr6 124950665 124950853 -64328701 + AluSx SINE Alu 152 303 -9 1138 175 52 9 chr6 124950891 124950952 -64328602 + AluSg/x SINE Alu 71 128 -184 2283 114 10 0 chr6 124950952 124951258 -64328296 + AluSg SINE Alu 1 309 -1 1138 175 52 9 chr6 124951258 124951407 -64328147 + AluSg/x SINE Alu 128 290 -22 2237 107 7 0 chr6 124951490 124951788 -64327766 + AluSx SINE Alu 1 300 -12 562 186 0 0 chr6 124951924 124952026 -64327528 - U13 snRNA snRNA -2 102 1 1743 137 27 43 chr6 124952275 124952414 -64327140 + AluSx SINE Alu 1 141 -171 2233 97 0 7 chr6 124952414 124952722 -64326832 + AluSc SINE Alu 1 306 -3 1743 137 27 43 chr6 124952722 124952881 -64326673 + AluSx SINE Alu 141 294 -18 2283 94 7 3 chr6 124953288 124953586 -64325968 + AluSq SINE Alu 1 299 -14 325 222 28 0 chr6 124953929 124954001 -64325553 + L1ME LINE L1 5503 5576 -594 285 77 0 0 chr6 124954002 124954041 -64325513 + MER41B LTR ERV1 481 519 -116 2291 101 0 0 chr6 124954041 124954329 -64325225 + AluSx SINE Alu 1 288 -24 248 236 0 0 chr6 124954339 124954394 -64325160 + L1M4 LINE L1 4487 4541 -1605 186 43 0 0 chr6 124954434 124954457 -64325097 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 696 176 0 32 chr6 124954476 124954601 -64324953 + FLAM_C SINE Alu 13 133 -10 1420 90 9 69 chr6 124954601 124954778 -64324776 + Tigger4(Zombi) DNA MER2_type 2513 2674 -57 2136 134 0 0 chr6 124954778 124955070 -64324484 - AluSx SINE Alu -20 292 1 1420 90 9 69 chr6 124955070 124955125 -64324429 + Tigger4(Zombi) DNA MER2_type 2674 2731 0 21 57 0 0 chr6 124955153 124955188 -64324366 + AT_rich Low_complexity Low_complexity 1 35 0 2365 88 7 0 chr6 124955195 124955490 -64324064 + AluSg SINE Alu 1 297 -13 2214 121 7 0 chr6 124955500 124955798 -64323756 + AluSx SINE Alu 1 300 -12 678 220 8 0 chr6 124956010 124956166 -64323388 - L1MD2 LINE L1 -349 5815 5680 859 225 222 18 chr6 124956174 124956673 -64322881 - L1MD2 LINE L1 -704 5458 4820 2124 126 10 0 chr6 124956673 124956967 -64322587 - AluSx SINE Alu -4 308 12 859 225 222 18 chr6 124956967 124957088 -64322466 - L1MD2 LINE L1 -1342 4820 4725 204 40 0 0 chr6 124957206 124957231 -64322323 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 1957 103 22 7 chr6 124957237 124957509 -64322045 - AluSq SINE Alu -37 276 1 251 189 189 11 chr6 124957513 124957608 -64321946 - L1MD2 LINE L1 -1712 4434 4323 225 182 164 0 chr6 124957658 124957713 -64321841 - L1MD2 LINE L1 -1992 4154 4091 238 260 57 101 chr6 124957876 124957948 -64321606 - L1MD2 LINE L1 -2054 4092 4018 1667 158 53 0 chr6 124957948 124958233 -64321321 - AluJb SINE Alu -12 300 1 238 260 57 101 chr6 124958233 124958387 -64321167 - L1MD2 LINE L1 -2128 4018 3876 437 52 0 0 chr6 124958481 124958539 -64321015 + MER41A LTR ERV1 409 466 -88 2162 103 3 3 chr6 124958593 124958884 -64320670 + AluSg SINE Alu 1 291 -19 238 219 31 16 chr6 124958884 124958948 -64320606 - MIR SINE MIR -159 103 39 2090 128 3 3 chr6 124959107 124959411 -64320143 - AluSx SINE Alu -8 304 1 2063 118 7 10 chr6 124959492 124959781 -64319773 + AluSx SINE Alu 7 294 -18 648 203 16 0 chr6 124960534 124960662 -64318892 - FLAM_C SINE Alu -3 130 1 757 274 106 26 chr6 124960930 124961317 -64318237 + L2 LINE L2 2836 3253 -60 620 221 20 27 chr6 124961324 124961473 -64318081 + MLT1F LTR MaLR 15 162 -380 262 290 14 0 chr6 124961467 124961536 -64318018 + MLT1F LTR MaLR 344 413 -154 * 1789 181 31 3 chr6 124961577 124961903 -64317651 - L1MC1 LINE L1 -13 6320 5986 30884 60 6 2 chr6 124961938 124967672 -64311882 + L1PA5 LINE L1 2 5780 -374 2401 95 0 0 chr6 124967672 124967977 -64311577 + AluY SINE Alu 1 305 -6 30884 60 6 2 chr6 124967977 124968354 -64311200 + L1PA5 LINE L1 5780 6154 0 2200 123 0 3 chr6 124968410 124968712 -64310842 + AluSx SINE Alu 1 301 -11 315 225 19 159 chr6 124968717 124968785 -64310769 + MIR SINE MIR 30 106 -156 2372 67 7 7 chr6 124968785 124969084 -64310470 - AluY SINE Alu -12 299 1 315 225 19 159 chr6 124969084 124969286 -64310268 + MIR SINE MIR 106 262 0 634 217 19 25 chr6 124969447 124969604 -64309950 - AluJo SINE Alu -35 277 122 237 33 0 0 chr6 124969606 124969636 -64309918 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2235 76 0 33 chr6 124969648 124969950 -64309604 + AluSc SINE Alu 3 294 -15 243 139 23 0 chr6 124970052 124970095 -64309459 + L1MB7 LINE L1 5485 5528 -656 1738 186 149 28 chr6 124970129 124970453 -64309101 + MLT1D LTR MaLR 24 416 -89 1931 126 14 0 chr6 124970453 124970772 -64308782 - AluY SINE Alu 0 323 1 1738 186 149 28 chr6 124970772 124970874 -64308680 + MLT1D LTR MaLR 416 504 -1 888 159 82 6 chr6 124970876 124971046 -64308508 + L1MB7 LINE L1 5523 5705 -479 1018 149 0 7 chr6 124971046 124971240 -64308314 + AluSc SINE Alu 134 326 0 2278 134 46 50 chr6 124971240 124971291 -64308263 + L1MB7 LINE L1 5707 5757 -427 1994 134 10 3 chr6 124971291 124971581 -64307973 + AluSx SINE Alu 2 293 -19 2278 134 46 50 chr6 124971581 124971984 -64307570 + L1MB7 LINE L1 5757 6159 -25 2316 60 0 3 chr6 124972262 124972578 -64306976 - AluSx SINE Alu 0 315 1 419 264 114 31 chr6 124973123 124973350 -64306204 + MIR SINE MIR 1 246 -16 1858 128 24 7 chr6 124974065 124974355 -64305199 - AluJb SINE Alu -17 295 1 406 156 57 113 chr6 124974381 124974460 -64305094 + MIR SINE MIR 74 144 -118 2365 46 0 14 chr6 124974460 124974768 -64304786 + AluY SINE Alu 4 307 0 406 156 57 113 chr6 124974768 124974828 -64304726 + MIR SINE MIR 144 206 -56 2199 132 3 0 chr6 124975272 124975583 -64303971 + AluSx SINE Alu 1 312 0 2333 91 7 0 chr6 124976371 124976667 -64302887 + AluSg SINE Alu 1 298 -12 216 362 72 24 chr6 124976688 124976895 -64302659 - L2 LINE L2 -220 3052 2836 250 288 96 16 chr6 124977146 124977271 -64302283 - L2 LINE L2 -849 2465 2331 267 279 23 0 chr6 124977287 124977373 -64302181 + L2 LINE L2 3225 3312 -1 2106 114 0 17 chr6 124977385 124977683 -64301871 + AluSg SINE Alu 1 293 -17 1922 121 41 10 chr6 124977782 124978072 -64301482 - AluSx SINE Alu -13 299 1 817 132 47 16 chr6 124978589 124978718 -64300836 + FLAM_C SINE Alu 1 133 -10 1284 153 53 0 chr6 124978730 124978939 -64300615 + AluJb SINE Alu 86 305 -7 2039 142 14 3 chr6 124979148 124979444 -64300110 - AluJb SINE Alu -11 301 3 819 188 50 0 chr6 124980086 124980267 -64299287 - L1MD3 LINE L1 -14 7981 7792 1069 150 23 0 chr6 124980267 124980440 -64299114 - AluSg/x SINE Alu -9 301 125 2156 108 14 0 chr6 124980444 124980739 -64298815 - AluSx SINE Alu -13 299 1 2461 93 3 0 chr6 124980742 124981054 -64298500 - AluSp SINE Alu 0 313 1 1173 175 88 4 chr6 124981054 124981305 -64298249 - L1MC4a LINE L1 -185 7623 7352 760 158 54 118 chr6 124981307 124981393 -64298161 - L1MC4a LINE L1 -854 6954 6864 2140 108 40 0 chr6 124981393 124981689 -64297865 - AluSx SINE Alu -4 308 1 760 158 54 118 chr6 124981689 124981823 -64297731 - L1MC4a LINE L1 -944 6864 6748 686 191 30 0 chr6 124981823 124981954 -64297600 + MER2 DNA MER2_type 1 135 -210 551 86 0 0 chr6 124981986 124982067 -64297487 + MER2 DNA MER2_type 126 206 -139 498 112 22 34 chr6 124982096 124982185 -64297369 - AluJ/FRAM SINE Alu -2 310 223 452 268 31 8 chr6 124982333 124982460 -64297094 + L2 LINE L2 3184 3313 0 21 71 0 0 chr6 124982499 124982541 -64297013 + AT_rich Low_complexity Low_complexity 1 42 0 2338 84 0 10 chr6 124982841 124983138 -64296416 + AluSp SINE Alu 1 294 -19 847 173 0 0 chr6 124983255 124983388 -64296166 - FLAM_A SINE Alu -4 138 6 932 105 0 23 chr6 124983611 124983744 -64295810 + FLAM_C SINE Alu 1 130 -3 1376 217 66 0 chr6 124983789 124984061 -64295493 - AluJb SINE Alu -22 290 1 448 163 109 33 chr6 124984715 124984807 -64294747 + MER58 DNA MER1_type 2 100 -115 2330 97 7 0 chr6 124984811 124985109 -64294445 + AluSp SINE Alu 1 300 -13 681 278 10 10 chr6 124985120 124985325 -64294229 + AluJo SINE Alu 2 206 -106 324 0 0 0 chr6 124985939 124985975 -64293579 + (CA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr6 124986103 124986125 -64293429 + AT_rich Low_complexity Low_complexity 1 22 0 1693 183 0 0 chr6 124986125 124986409 -64293145 - AluJb SINE Alu -28 284 1 1736 166 7 30 chr6 124987021 124987322 -64292232 - AluJb SINE Alu -18 294 1 336 138 35 0 chr6 124987329 124987387 -64292167 - AluSp/q SINE Alu -3 300 241 1915 107 0 37 chr6 124987413 124987683 -64291871 - AluSq SINE Alu -43 270 11 1812 161 4 0 chr6 124987997 124988305 -64291249 - AluSx SINE Alu 0 309 1 2566 132 61 82 chr6 124988515 124988664 -64290890 - MER50 LTR ERV1 -23 711 560 1833 115 97 0 chr6 124988664 124988933 -64290621 + AluSx SINE Alu 1 295 -17 2566 132 61 82 chr6 124988933 124989092 -64290462 - MER50 LTR ERV1 -174 560 399 2338 107 0 16 chr6 124989092 124989409 -64290145 - AluSx SINE Alu 0 312 1 2566 132 61 82 chr6 124989409 124989623 -64289931 - MER50 LTR ERV1 -335 399 199 468 204 0 0 chr6 124989624 124989712 -64289842 - AluS SINE Alu -223 89 2 901 160 23 34 chr6 124989841 124990016 -64289538 + MER50 LTR ERV1 1 173 -561 1041 148 0 0 chr6 124990019 124990168 -64289386 + AluSg/x SINE Alu 153 301 -11 1240 236 0 0 chr6 124990216 124990453 -64289101 - MER45B DNA AcHobo -544 496 260 344 233 22 22 chr6 124990643 124990733 -64288821 + MIR3 SINE MIR 91 180 -28 1522 116 4 52 chr6 124991301 124991551 -64288003 - AluJb SINE Alu -3 309 72 195 324 68 40 chr6 124991905 124992053 -64287501 - MIR SINE MIR -61 201 50 244 333 24 24 chr6 124992337 124992460 -64287094 + MIR SINE MIR 32 154 -108 1829 141 18 0 chr6 124992572 124992848 -64286706 - AluJb SINE Alu -2 310 30 631 158 0 0 chr6 124993081 124993182 -64286372 + FLAM_C SINE Alu 16 116 -27 2207 126 0 0 chr6 124993202 124993503 -64286051 + AluSx SINE Alu 1 301 -11 1806 160 31 3 chr6 124993544 124993837 -64285717 - AluJo SINE Alu -11 301 1 2235 97 24 0 chr6 124993978 124994266 -64285288 - AluSq SINE Alu -18 295 1 1218 122 0 12 chr6 124994514 124994686 -64284868 - AluSg/x SINE Alu -31 279 110 1093 181 5 20 chr6 124994825 124995029 -64284525 + AluJo SINE Alu 82 282 -30 2274 103 0 0 chr6 124995036 124995317 -64284237 - AluSq SINE Alu -32 281 1 2307 110 0 3 chr6 124995378 124995686 -64283868 - AluSg SINE Alu -3 307 1 464 201 98 71 chr6 124995686 124995754 -64283800 - MER112 DNA MER1_type -68 192 127 1827 103 31 103 chr6 124995754 124996073 -64283481 - AluSx SINE Alu -16 296 1 464 201 98 71 chr6 124996073 124996188 -64283366 - MER112 DNA MER1_type -133 127 4 1369 150 51 68 chr6 124996830 124997017 -64282537 - AluJb SINE Alu -4 308 126 1941 123 38 3 chr6 124997017 124997310 -64282244 - AluSx SINE Alu -9 303 1 1369 150 51 68 chr6 124997310 124997416 -64282138 - AluJb SINE Alu -186 126 20 455 231 91 8 chr6 124997518 124997639 -64281915 - FLAM_C SINE Alu -11 132 2 2002 139 7 7 chr6 124997651 124997946 -64281608 - AluSx SINE Alu -17 295 1 21 36 0 0 chr6 124998004 124998032 -64281522 + AT_rich Low_complexity Low_complexity 1 28 0 1741 147 3 57 chr6 124998034 124998201 -64281353 - AluJo SINE Alu -29 283 137 1625 108 123 11 chr6 124998201 124998461 -64281093 + AluSg1 SINE Alu 1 289 -20 1741 147 3 57 chr6 124998461 124998592 -64280962 - AluJo SINE Alu -175 137 1 216 86 0 0 chr6 124998652 124998687 -64280867 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 577 122 131 19 chr6 124998853 124998960 -64280594 + FLAM_A SINE Alu 13 131 -11 2218 131 0 6 chr6 124999072 124999386 -64280168 + AluSx SINE Alu 1 312 0 25 0 0 0 chr6 124999651 124999676 -64279878 + AT_rich Low_complexity Low_complexity 1 25 0 816 84 0 9 chr6 124999679 124999786 -64279768 - U6 snRNA snRNA -1 106 1 2153 117 3 23 chr6 125000308 125000475 -64279079 - AluSx SINE Alu -11 301 141 2345 76 3 0 chr6 125000475 125000763 -64278791 - AluY SINE Alu -22 289 1 2153 117 3 23 chr6 125000763 125000902 -64278652 - AluSx SINE Alu -171 141 1 207 269 90 0 chr6 125000935 125001002 -64278552 - MIR SINE MIR -29 233 161 1777 181 10 3 chr6 125001079 125001382 -64278172 - AluJb SINE Alu -7 305 1 1839 164 23 16 chr6 125001525 125001835 -64277719 - AluJo SINE Alu 0 312 1 243 255 209 39 chr6 125002367 125002520 -64277034 - MIR SINE MIR -64 198 20 1789 154 50 7 chr6 125002699 125002998 -64276556 - AluSx SINE Alu 0 312 1 1703 173 27 13 chr6 125003572 125003873 -64275681 - AluJo SINE Alu -7 305 1 374 298 48 0 chr6 125003947 125004071 -64275483 - MIR SINE MIR -109 153 24 2086 149 0 0 chr6 125004071 125004379 -64275175 - AluSx SINE Alu -4 308 1 873 150 0 0 chr6 125005264 125005391 -64274163 + FLAM_C SINE Alu 1 127 -16 2154 114 13 10 chr6 125005535 125005841 -64273713 - AluY SINE Alu -4 307 1 180 298 0 0 chr6 125006097 125006144 -64273410 + MIR SINE MIR 102 148 -114 1138 175 194 16 chr6 125006234 125006486 -64273068 - AluJb SINE Alu -4 298 2 1943 145 10 13 chr6 125007720 125008023 -64271531 + AluSx SINE Alu 1 302 -10 10492 39 8 127 chr6 125008093 125009653 -64269901 - SVA Other Other -1 1385 11 307 249 132 56 chr6 125009713 125009926 -64269628 + Tigger8 DNA MER2_type 35 263 -403 * 659 201 87 63 chr6 125009895 125010149 -64269405 - Tigger8 DNA MER2_type -180 486 227 1294 172 47 47 chr6 125010343 125010639 -64268915 + AluSx SINE Alu 1 296 -16 526 130 0 0 chr6 125010639 125010716 -64268838 + AluSg/x SINE Alu 134 210 -102 860 184 14 0 chr6 125010717 125010864 -64268690 + AluSg/x SINE Alu 149 297 -13 1896 117 46 0 chr6 125010883 125011164 -64268390 + AluSq SINE Alu 19 312 -1 1026 114 0 7 chr6 125011164 125011313 -64268241 + Tigger4(Zombi) DNA MER2_type 2544 2691 -40 2367 99 0 13 chr6 125011314 125011627 -64267927 - AluY SINE Alu -2 309 1 693 147 18 0 chr6 125011635 125011744 -64267810 - AluSg/x SINE Alu -20 290 180 2170 102 41 0 chr6 125011989 125012284 -64267270 + AluSx SINE Alu 1 307 -5 2063 137 0 13 chr6 125012294 125012607 -64266947 + AluSc SINE Alu 1 309 0 252 261 139 9 chr6 125012953 125013068 -64266486 + MIR3 SINE MIR 46 175 -33 225 183 0 50 chr6 125014045 125014105 -64265449 + L1MA4 LINE L1 6238 6294 -6 2379 85 3 3 chr6 125014301 125014608 -64264946 - AluSx SINE Alu -5 307 1 2489 54 3 3 chr6 125015115 125015409 -64264145 + AluY SINE Alu 1 294 -17 2284 73 28 0 chr6 125015841 125016130 -64263424 + AluY SINE Alu 1 297 -14 459 179 343 0 chr6 125016534 125016668 -64262886 + MER5A DNA MER1_type 4 183 -6 1413 209 21 11 chr6 125017624 125017911 -64261643 - AluJo SINE Alu -21 291 2 318 215 15 0 chr6 125018249 125018314 -64261240 - MLT1B LTR MaLR 0 390 325 973 144 36 24 chr6 125018315 125018482 -64261072 - FAM SINE Alu -16 169 1 1979 147 12 24 chr6 125018482 125018822 -64260732 - MLT1B LTR MaLR -50 340 5 21 0 0 0 chr6 125019234 125019255 -64260299 + AT_rich Low_complexity Low_complexity 1 21 0 2025 132 0 0 chr6 125019255 125019542 -64260012 - AluSx SINE Alu -23 289 3 882 140 0 70 chr6 125019608 125019751 -64259803 - FLAM_C SINE Alu 0 133 1 2453 93 0 0 chr6 125019755 125020065 -64259489 - AluSp SINE Alu -3 310 1 2137 115 7 3 chr6 125020065 125020360 -64259194 - AluSq SINE Alu -17 296 1 216 0 0 0 chr6 125070685 125070709 -64208845 + (A)n Simple_repeat Simple_repeat 1 24 0 2319 76 13 3 chr6 125070709 125071010 -64208544 + AluY SINE Alu 1 304 -7 2365 79 0 3 chr6 125071073 125071364 -64208190 + AluY SINE Alu 1 290 -21 1294 144 0 19 chr6 125071808 125072016 -64207538 - AluSc SINE Alu -13 296 93 1987 143 0 3 chr6 125072118 125072405 -64207149 - AluSx SINE Alu -26 286 1 1989 102 0 4 chr6 125073372 125073626 -64205928 - AluSg SINE Alu -57 253 1 464 201 98 71 chr6 125073626 125073694 -64205860 - MER112 DNA MER1_type -68 192 127 1827 103 31 103 chr6 125073694 125074013 -64205541 - AluSx SINE Alu -16 296 1 464 201 98 71 chr6 125074013 125074128 -64205426 - MER112 DNA MER1_type -133 127 4 678 174 30 8 chr6 125074770 125074902 -64204652 - AluJb SINE Alu -4 308 174 594 134 14 92 chr6 125075202 125075292 -64204262 - L1MB7 LINE L1 -347 5837 5760 1994 134 10 3 chr6 125075292 125075582 -64203972 - AluSx SINE Alu -19 293 2 594 134 14 92 chr6 125075582 125075633 -64203921 - L1MB7 LINE L1 -424 5760 5707 956 157 0 20 chr6 125075633 125075829 -64203725 - AluSc SINE Alu 0 326 134 866 165 82 6 chr6 125075829 125075999 -64203555 - L1MB7 LINE L1 -479 5705 5523 1041 204 167 30 chr6 125076001 125076103 -64203451 - MLT1D LTR MaLR -1 504 417 1949 126 14 0 chr6 125076103 125076422 -64203132 + AluY SINE Alu 1 323 0 1041 204 167 30 chr6 125076422 125076581 -64202973 - MLT1D LTR MaLR -88 417 205 201 261 43 22 chr6 125076684 125076776 -64202778 + L2 LINE L2 2568 2661 -653 811 235 79 88 chr6 125076776 125076942 -64202612 - MLT1J LTR MaLR -1 510 344 399 41 0 0 chr6 125076942 125076991 -64202563 + (TG)n Simple_repeat Simple_repeat 2 50 0 811 235 79 88 chr6 125076991 125077292 -64202262 - MLT1J LTR MaLR -167 344 47 2133 118 3 22 chr6 125077302 125077617 -64201937 + AluSx SINE Alu 1 309 -3 206 281 16 16 chr6 125077661 125077725 -64201829 + L2 LINE L2 2728 2791 -523 205 88 29 0 chr6 125077760 125077794 -64201760 + (TAAAAA)n Simple_repeat Simple_repeat 4 38 0 896 164 0 0 chr6 125077794 125077934 -64201620 + FLAM_C SINE Alu 1 140 -3 1736 166 7 30 chr6 125078306 125078607 -64200947 - AluJb SINE Alu -18 294 1 336 138 35 0 chr6 125078614 125078672 -64200882 - AluSp/q SINE Alu -3 300 241 1915 107 0 37 chr6 125078698 125078968 -64200586 - AluSq SINE Alu -43 270 11 1793 174 0 0 chr6 125079282 125079591 -64199963 - AluSx SINE Alu 0 309 1 327 122 0 0 chr6 125079591 125079640 -64199914 - MER50 LTR ERV1 -295 439 391 1449 118 0 0 chr6 125079740 125079935 -64199619 - AluSg SINE Alu -115 195 1 267 279 23 0 chr6 125079947 125080033 -64199521 - L2 LINE L2 -1 3312 3225 250 288 96 16 chr6 125080049 125080174 -64199380 + L2 LINE L2 2331 2465 -849 216 362 72 24 chr6 125080425 125080632 -64198922 + L2 LINE L2 2836 3052 -220 2333 91 7 0 chr6 125080653 125080949 -64198605 - AluSg SINE Alu -12 298 1 1170 143 0 0 chr6 125081070 125081245 -64198309 + AluSg/x SINE Alu 125 299 -11 1806 160 31 3 chr6 125081286 125081579 -64197975 - AluJo SINE Alu -11 301 1 2235 97 24 0 chr6 125081720 125082008 -64197546 - AluSq SINE Alu -18 295 1 1218 122 0 12 chr6 125082256 125082428 -64197126 - AluSg/x SINE Alu -31 281 112 1093 181 5 20 chr6 125082567 125082771 -64196783 + AluJo SINE Alu 82 282 -30 1505 89 11 0 chr6 125082778 125082969 -64196585 - AluSp SINE Alu -32 281 89 2050 142 14 3 chr6 125083132 125083428 -64196126 - AluJb SINE Alu -11 301 3 819 188 50 0 chr6 125083967 125084148 -64195406 - L1MD3 LINE L1 -14 7981 7792 1069 150 23 0 chr6 125084148 125084321 -64195233 - AluSg/x SINE Alu -9 301 125 2156 108 14 0 chr6 125084325 125084620 -64194934 - AluSx SINE Alu -13 299 1 186 133 0 0 chr6 125084623 125084653 -64194901 + (T)n Simple_repeat Simple_repeat 1 30 0 322 224 13 26 chr6 125084814 125084890 -64194664 + MER116 DNA Mariner 5 79 -1 1746 172 21 0 chr6 125084992 125085282 -64194272 - AluJb SINE Alu -16 296 1 1011 139 36 12 chr6 125085397 125085562 -64193992 - AluSp SINE Alu -12 301 133 240 214 12 60 chr6 125085629 125085713 -64193841 + MLT1L LTR MaLR 1 80 -535 354 227 13 0 chr6 125085723 125085798 -64193756 + MLT1J LTR MaLR 113 188 -323 208 139 0 0 chr6 125085802 125085838 -64193716 + (A)n Simple_repeat Simple_repeat 1 36 0 315 220 110 131 chr6 125085839 125086030 -64193524 + MLT1J LTR MaLR 177 363 -148 1726 158 40 10 chr6 125086216 125086519 -64193035 + AluJb SINE Alu 1 312 0 253 195 207 12 chr6 125086965 125087047 -64192507 + MLT1J LTR MaLR 414 511 0 1175 122 0 6 chr6 125087053 125087225 -64192329 - AluSx SINE Alu -5 305 135 1249 65 0 7 chr6 125087325 125087479 -64192075 - AluSx SINE Alu -159 153 1 2166 112 7 3 chr6 125087479 125087774 -64191780 - AluSq SINE Alu -17 296 1 2244 116 0 3 chr6 125088615 125088918 -64190636 + AluSx SINE Alu 1 302 -10 670 102 0 0 chr6 125088920 125089008 -64190546 + AluY SINE Alu 2 89 -222 824 103 9 0 chr6 125089008 125089148 -64190406 + AluSg/x SINE Alu 174 314 0 502 137 14 0 chr6 125089381 125089454 -64190100 + AluSg SINE Alu 2 75 -234 1600 96 50 0 chr6 125089554 125089773 -64189781 + AluSg SINE Alu 78 307 -5 2063 137 0 13 chr6 125089783 125090096 -64189458 + AluSc SINE Alu 1 309 0 252 261 139 9 chr6 125090442 125090557 -64188997 + MIR3 SINE MIR 46 175 -33 326 210 25 12 chr6 125091672 125091753 -64187801 - AluSg/x SINE Alu -111 191 110 1652 150 114 78 chr6 125091862 125091966 -64187588 - MLT1D LTR MaLR 0 505 406 1753 129 54 27 chr6 125091966 125092260 -64187294 + AluSg SINE Alu 1 302 -8 1652 150 114 78 chr6 125092260 125092541 -64187013 - MLT1D LTR MaLR -99 406 106 1013 140 0 24 chr6 125092543 125092707 -64186847 - AluSq SINE Alu -121 192 33 2247 105 0 3 chr6 125093257 125093552 -64186002 + AluSg SINE Alu 3 296 -14 1559 203 40 3 chr6 125093616 125093996 -64185558 + L1M4 LINE L1 3585 3978 -2168 1612 189 26 29 chr6 125094000 125094313 -64185241 + AluJo SINE Alu 1 312 0 2938 197 57 19 chr6 125094321 125095207 -64184347 + L1M4 LINE L1 4601 5528 -656 243 157 98 20 chr6 125095241 125095292 -64184262 + MLT1B LTR MaLR 24 78 -427 1357 129 100 66 chr6 125095394 125095450 -64184104 - MER50 LTR ERV1 -256 478 425 2308 114 0 16 chr6 125095450 125095767 -64183787 - AluSx SINE Alu 0 312 1 1357 129 100 66 chr6 125095767 125095981 -64183573 - MER50 LTR ERV1 -309 425 199 454 195 11 0 chr6 125095982 125096069 -64183485 - AluS SINE Alu -223 89 2 901 160 23 34 chr6 125096197 125096372 -64183182 + MER50 LTR ERV1 1 173 -561 1041 148 0 0 chr6 125096375 125096524 -64183030 + AluSg/x SINE Alu 151 299 -11 1240 236 0 0 chr6 125096572 125096809 -64182745 - MER45B DNA AcHobo -544 496 260 344 233 22 22 chr6 125096999 125097089 -64182465 + MIR3 SINE MIR 91 180 -28 1320 150 52 0 chr6 125097657 125097870 -64181684 - AluJb SINE Alu -3 309 86 817 132 47 16 chr6 125097882 125098011 -64181543 - FLAM_C SINE Alu -10 133 1 829 109 0 0 chr6 125098528 125098638 -64180916 + AluSq/x SINE Alu 1 110 -203 883 125 42 28 chr6 125098738 125098882 -64180672 + FAM SINE Alu 24 169 -16 340 227 0 0 chr6 125098883 125098949 -64180605 + MLT1B LTR MaLR 325 390 0 1163 138 0 12 chr6 125098956 125099123 -64180431 + AluJb SINE Alu 129 293 -19 1417 256 76 38 chr6 125099147 125099531 -64180023 - L1ME4a LINE L1 -220 5901 5486 1784 164 0 45 chr6 125099531 125099843 -64179711 - AluJb SINE Alu -13 299 2 1417 256 76 38 chr6 125099843 125100040 -64179514 - L1ME4a LINE L1 -635 5486 5298 1357 101 29 5 chr6 125100392 125100600 -64178954 + L1PB2 LINE L1 5928 6140 -11 2338 103 7 0 chr6 125100760 125101070 -64178484 - AluSp SINE Alu 0 313 2 1130 129 15 70 chr6 125101857 125101870 -64177684 + MLT1B LTR MaLR 201 213 -177 3706 107 34 92 chr6 125101870 125102543 -64177011 + MER51A LTR ERV1 1 634 0 1130 129 15 70 chr6 125102543 125102730 -64176824 + MLT1B LTR MaLR 213 390 0 778 285 83 40 chr6 125102751 125103232 -64176322 + L2 LINE L2 2809 3310 -3 21 0 0 0 chr6 125103262 125103283 -64176271 + AT_rich Low_complexity Low_complexity 1 21 0 1756 150 3 37 chr6 125103286 125103436 -64176118 - AluJb SINE Alu -28 284 147 2436 91 0 0 chr6 125103436 125103734 -64175820 - AluSg SINE Alu -12 298 1 1756 150 3 37 chr6 125103734 125103877 -64175677 - AluJb SINE Alu -165 147 1 2250 110 10 0 chr6 125103884 125104192 -64175362 - AluSx SINE Alu -1 311 1 1337 127 97 82 chr6 125105647 125105796 -64173758 - AluJo SINE Alu -20 292 136 2222 78 17 3 chr6 125105796 125106090 -64173464 - AluSq SINE Alu -15 298 1 1337 127 97 82 chr6 125106090 125106207 -64173347 - AluJo SINE Alu -176 136 22 2353 95 0 0 chr6 125107801 125108106 -64171448 - AluSp SINE Alu -8 305 1 329 234 0 26 chr6 125108172 125108249 -64171305 + MIR SINE MIR 170 244 -18 971 169 0 6 chr6 125108336 125108514 -64171040 - FRAM SINE Alu 0 176 1 565 167 70 0 chr6 125108652 125108766 -64170788 - L1MC4a LINE L1 -335 7473 7352 760 158 54 118 chr6 125108768 125108854 -64170700 - L1MC4a LINE L1 -854 6954 6864 2140 108 40 0 chr6 125108854 125109150 -64170404 - AluSx SINE Alu -4 308 1 760 158 54 118 chr6 125109150 125109284 -64170270 - L1MC4a LINE L1 -944 6864 6748 677 182 30 8 chr6 125109284 125109416 -64170138 + MER2 DNA MER2_type 1 135 -210 551 86 0 0 chr6 125109448 125109529 -64170025 + MER2 DNA MER2_type 126 206 -139 498 112 22 34 chr6 125109558 125109647 -64169907 - AluJ/FRAM SINE Alu -2 310 223 452 268 31 8 chr6 125109795 125109922 -64169632 + L2 LINE L2 3184 3313 0 21 71 0 0 chr6 125109961 125110003 -64169551 + AT_rich Low_complexity Low_complexity 1 42 0 2338 84 0 10 chr6 125110303 125110600 -64168954 + AluSp SINE Alu 1 294 -19 847 173 0 0 chr6 125110717 125110850 -64168704 - FLAM_A SINE Alu -4 138 6 932 105 0 23 chr6 125111073 125111206 -64168348 + FLAM_C SINE Alu 1 130 -3 1376 217 66 0 chr6 125111251 125111523 -64168031 - AluJb SINE Alu -22 290 1 448 163 109 33 chr6 125112177 125112269 -64167285 + MER58 DNA MER1_type 2 100 -115 2330 97 7 0 chr6 125112273 125112571 -64166983 + AluSp SINE Alu 1 300 -13 1304 231 3 28 chr6 125112581 125112901 -64166653 + AluJo SINE Alu 1 312 0 306 0 0 0 chr6 125113014 125113048 -64166506 + (CA)n Simple_repeat Simple_repeat 2 35 0 1541 204 0 0 chr6 125113200 125113484 -64166070 - AluJb SINE Alu -28 284 1 2199 132 3 0 chr6 125114750 125115061 -64164493 - AluSx SINE Alu 0 312 1 406 156 57 113 chr6 125115505 125115565 -64163989 - MIR SINE MIR -56 206 144 2364 46 0 14 chr6 125115565 125115873 -64163681 - AluY SINE Alu 0 307 4 406 156 57 113 chr6 125115873 125115952 -64163602 - MIR SINE MIR -118 144 74 1858 128 24 7 chr6 125115978 125116268 -64163286 + AluJb SINE Alu 1 295 -17 419 264 114 31 chr6 125116983 125117210 -64162344 - MIR SINE MIR -16 246 1 2317 60 0 3 chr6 125117756 125118072 -64161482 + AluSx SINE Alu 1 315 0 1627 136 52 32 chr6 125118350 125118659 -64160895 - L1MB7 LINE L1 -25 6159 5845 275 298 12 0 chr6 125118763 125118847 -64160707 + MIR SINE MIR 69 153 -109 1703 173 27 13 chr6 125118921 125119222 -64160332 + AluJo SINE Alu 1 305 -7 1700 145 56 7 chr6 125119796 125120108 -64159446 + AluSx SINE Alu 1 325 0 243 255 209 39 chr6 125120274 125120427 -64159127 + MIR SINE MIR 20 198 -64 1823 168 23 16 chr6 125120959 125121269 -64158285 + AluJo SINE Alu 1 312 0 1719 191 10 3 chr6 125121412 125121715 -64157839 + AluJb SINE Alu 1 305 -7 207 269 90 0 chr6 125121792 125121859 -64157695 + MIR SINE MIR 161 233 -29 2153 117 3 23 chr6 125121892 125122031 -64157523 + AluSx SINE Alu 1 141 -171 2345 76 3 0 chr6 125122031 125122319 -64157235 + AluY SINE Alu 1 289 -22 2153 117 3 23 chr6 125122319 125122486 -64157068 + AluSx SINE Alu 141 301 -11 816 84 0 9 chr6 125123008 125123115 -64156439 + U6 snRNA snRNA 1 106 -1 25 0 0 0 chr6 125123118 125123143 -64156411 + AT_rich Low_complexity Low_complexity 1 25 0 2218 131 0 6 chr6 125123408 125123722 -64155832 - AluSx SINE Alu 0 312 1 577 122 131 19 chr6 125123834 125123941 -64155613 - FLAM_A SINE Alu -11 131 13 2190 94 0 0 chr6 125124223 125124498 -64155056 - AluSg SINE Alu -35 275 1 351 267 56 43 chr6 125124520 125124719 -64154835 - MIR SINE MIR -50 212 17 * 447 303 49 45 chr6 125124707 125124951 -64154603 + L3 LINE CR1 433 677 -900 288 254 231 23 chr6 125125213 125125386 -64154168 + L3 LINE CR1 1022 1230 -347 27 49 0 0 chr6 125125421 125125462 -64154092 + AT_rich Low_complexity Low_complexity 1 41 0 814 161 0 0 chr6 125125462 125125580 -64153974 - FLAM_C SINE Alu -25 118 1 1787 240 56 17 chr6 125125580 125126097 -64153457 - L1ME1 LINE L1 -17 6149 5613 2308 109 0 0 chr6 125126233 125126546 -64153008 + AluSq SINE Alu 1 313 0 528 337 38 19 chr6 125126689 125126956 -64152598 + L3 LINE CR1 1194 1465 -112 2304 110 7 0 chr6 125127346 125127656 -64151898 + AluSx SINE Alu 1 312 0 2462 87 0 10 chr6 125127698 125128009 -64151545 + AluSg SINE Alu 1 308 -2 1240 207 164 0 chr6 125128073 125128329 -64151225 - AluJb SINE Alu -3 299 2 792 178 0 8 chr6 125128360 125128489 -64151065 + FLAM_A SINE Alu 1 128 -5 244 170 19 19 chr6 125128539 125128592 -64150962 + AluJo SINE Alu 84 136 -166 259 83 21 21 chr6 125128614 125128662 -64150892 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 668 153 57 8 chr6 125128673 125128797 -64150757 + FLAM_C SINE Alu 2 131 -2 32 26 0 0 chr6 125128798 125128837 -64150717 + AT_rich Low_complexity Low_complexity 1 39 0 212 328 0 0 chr6 125128971 125128992 -64150562 + GA-rich Low_complexity Low_complexity 1 21 -37 2004 122 16 10 chr6 125128992 125129295 -64150259 + AluSq SINE Alu 1 305 -8 212 328 0 0 chr6 125129295 125129331 -64150223 + GA-rich Low_complexity Low_complexity 20 58 0 1385 149 41 38 chr6 125129334 125129429 -64150125 - LTR54 LTR ERV1 -3 507 414 2398 74 0 13 chr6 125129429 125129728 -64149826 + AluSx SINE Alu 1 295 -17 1385 149 41 38 chr6 125129728 125130064 -64149490 - LTR54 LTR ERV1 -96 414 5 779 206 0 0 chr6 125130064 125130205 -64149349 - MER57-int LTR ERV1 -384 7153 7013 2154 114 13 10 chr6 125130430 125130736 -64148818 - AluY SINE Alu -4 307 1 180 298 0 0 chr6 125130992 125131039 -64148515 + MIR SINE MIR 102 148 -114 1138 175 194 16 chr6 125131129 125131381 -64148173 - AluJb SINE Alu -4 298 2 1943 145 10 13 chr6 125132615 125132918 -64146636 + AluSx SINE Alu 1 302 -10 10492 39 8 127 chr6 125132988 125134548 -64145006 - SVA Other Other -1 1385 11 307 249 132 56 chr6 125134608 125134821 -64144733 + Tigger8 DNA MER2_type 35 263 -403 * 660 209 79 51 chr6 125134790 125135043 -64144511 - Tigger8 DNA MER2_type -180 486 227 1294 172 47 47 chr6 125135237 125135533 -64144021 + AluSx SINE Alu 1 296 -16 526 130 0 0 chr6 125135533 125135610 -64143944 + AluSg/x SINE Alu 134 210 -102 860 184 14 0 chr6 125135611 125135758 -64143796 + AluSg/x SINE Alu 149 297 -13 1896 117 46 0 chr6 125135777 125136058 -64143496 + AluSq SINE Alu 19 312 -1 1007 116 0 7 chr6 125136058 125136205 -64143349 + Tigger4(Zombi) DNA MER2_type 2544 2689 -42 1436 254 86 48 chr6 125136320 125136353 -64143201 + MLT1E2 LTR MaLR 102 132 -494 2325 72 7 7 chr6 125136353 125136645 -64142909 + AluY SINE Alu 1 292 -19 1436 254 86 48 chr6 125136645 125137111 -64142443 + MLT1E2 LTR MaLR 132 620 -6 2333 72 24 0 chr6 125137186 125137479 -64142075 - AluY SINE Alu -11 300 1 1478 201 10 17 chr6 125137482 125137781 -64141773 - AluJo SINE Alu -15 297 1 2116 114 7 3 chr6 125138614 125138904 -64140650 - AluSx SINE Alu -19 293 3 2630 185 63 32 chr6 125139175 125139289 -64140265 + MLT1F LTR MaLR 3 112 -430 2262 111 0 10 chr6 125139289 125139587 -64139967 - AluSx SINE Alu -17 295 1 2630 185 63 32 chr6 125139587 125139996 -64139558 + MLT1F LTR MaLR 112 542 0 1693 123 3 94 chr6 125140525 125140645 -64138909 + AluSx SINE Alu 23 152 -160 2331 94 7 7 chr6 125140645 125140952 -64138602 + AluSp SINE Alu 1 307 -6 1693 123 3 94 chr6 125140952 125141140 -64138414 + AluSx SINE Alu 152 303 -9 503 512 8 21 chr6 125141179 125141239 -64138315 + AluJb SINE Alu 72 131 -181 2283 114 10 0 chr6 125141239 125141545 -64138009 + AluSg SINE Alu 1 309 -1 503 512 8 21 chr6 125141545 125141726 -64137828 + AluJb SINE Alu 131 310 -2 2237 107 7 0 chr6 125141786 125142084 -64137470 + AluSx SINE Alu 1 300 -12 562 186 0 0 chr6 125142220 125142322 -64137232 - U13 snRNA snRNA -2 102 1 1743 137 27 43 chr6 125142571 125142710 -64136844 + AluSx SINE Alu 1 141 -171 2233 97 0 7 chr6 125142710 125143018 -64136536 + AluSc SINE Alu 1 306 -3 1743 137 27 43 chr6 125143018 125143177 -64136377 + AluSx SINE Alu 141 294 -18 2283 94 7 3 chr6 125143584 125143882 -64135672 + AluSq SINE Alu 1 299 -14 325 222 28 0 chr6 125144225 125144297 -64135257 + L1ME LINE L1 5503 5576 -594 285 77 0 0 chr6 125144298 125144337 -64135217 + MER41A LTR ERV1 400 438 -116 2343 101 0 0 chr6 125144337 125144633 -64134921 + AluSx SINE Alu 1 296 -16 1118 238 31 28 chr6 125144824 125145110 -64134444 - MER65-int LTR ERV1 -616 6921 6635 251 219 0 31 chr6 125145104 125145168 -64134386 - MER65-int LTR ERV1 -653 4218 4157 * 2527 207 79 94 chr6 125145198 125145943 -64133611 - MER65-int LTR ERV1 -412 4524 3513 2319 102 3 0 chr6 125145943 125146238 -64133316 - AluSp SINE Alu -15 298 3 2527 207 79 94 chr6 125146238 125146456 -64133098 - MER65-int LTR ERV1 -1423 3513 3293 969 177 0 0 chr6 125146726 125146925 -64132629 - AluSg/x SINE Alu 0 312 137 534 191 30 54 chr6 125146929 125147106 -64132448 - L1M2 LINE L1 -656 5524 5390 5777 194 15 40 chr6 125147110 125148475 -64131079 - L1M4 LINE L1 -944 5202 3872 333 0 0 0 chr6 125148475 125148512 -64131042 + (TG)n Simple_repeat Simple_repeat 2 38 0 1498 207 36 0 chr6 125149645 125149954 -64129600 - L1M4 LINE L1 -2268 3878 3559 1182 127 27 32 chr6 125149954 125150063 -64129491 - L1MB2 LINE L1 -7 6164 6056 2205 109 7 3 chr6 125150063 125150357 -64129197 - AluSx SINE Alu -17 295 1 1182 127 27 32 chr6 125150357 125150467 -64129087 - L1MB2 LINE L1 -115 6056 5946 757 227 27 0 chr6 125150474 125150624 -64128930 - FAM SINE Alu -19 166 13 2226 151 24 5 chr6 125150628 125151005 -64128549 - L1MB2 LINE L1 -210 5961 5578 803 217 78 22 chr6 125151034 125151264 -64128290 - L1M4 LINE L1 -2567 3579 3337 1992 107 4 7 chr6 125151264 125151562 -64127992 - AluSx SINE Alu 0 310 14 1502 119 10 0 chr6 125151662 125151864 -64127690 - AluSx SINE Alu -108 204 1 198 261 0 0 chr6 125151864 125151910 -64127644 - L2 LINE L2 -10 3262 3217 404 284 66 49 chr6 125151969 125152212 -64127342 + MER112 DNA MER1_type 1 247 -13 1929 54 25 36 chr6 125152288 125152463 -64127091 - L1MA1 LINE L1 -6 6296 6124 2203 102 0 23 chr6 125152463 125152768 -64126786 + AluSx SINE Alu 1 298 -14 1929 54 25 36 chr6 125152768 125152870 -64126684 - L1MA1 LINE L1 -178 6124 6022 193 245 0 0 chr6 125152920 125152973 -64126581 + L2 LINE L2 3185 3237 -35 341 255 20 0 chr6 125153839 125153937 -64125617 + L1MC4a LINE L1 5843 5942 -1866 610 170 0 36 chr6 125154076 125154188 -64125366 - MER2 DNA MER2_type -237 108 1 25 75 0 0 chr6 125154218 125154271 -64125283 + AT_rich Low_complexity Low_complexity 1 53 0 2322 91 7 3 chr6 125154324 125154621 -64124933 - AluSp SINE Alu -13 300 3 1234 172 0 5 chr6 125154623 125154832 -64124722 - MER4D LTR ERV1 -695 208 1 674 212 0 29 chr6 125154970 125155107 -64124447 + FLAM_A SINE Alu 1 133 0 2187 133 0 0 chr6 125155367 125155667 -64123887 - AluSx SINE Alu -12 300 1 203 303 33 16 chr6 125155818 125155940 -64123614 + L2 LINE L2 2367 2490 -824 1206 180 0 0 chr6 125156765 125156971 -64122583 + AluJo SINE Alu 101 306 -6 876 142 0 0 chr6 125157042 125157176 -64122378 + L1MA2 LINE L1 6171 6304 0 244 277 0 0 chr6 125157494 125157559 -64121995 + (CA)n Simple_repeat Simple_repeat 1 65 0 2766 77 6 0 chr6 125157827 125158180 -64121374 - THE1A LTR MaLR 0 355 1 305 175 63 16 chr6 125158590 125158653 -64120901 - MLT1B LTR MaLR 0 390 325 2058 99 45 10 chr6 125158653 125158945 -64120609 + AluSq SINE Alu 1 302 -11 883 207 0 6 chr6 125158945 125159109 -64120445 + AluJb SINE Alu 134 296 -16 1662 169 55 72 chr6 125159115 125159169 -64120385 - MLT1C LTR MaLR -50 417 364 11829 78 6 9 chr6 125159169 125161553 -64118001 - L1PA7 LINE L1 0 6154 3776 1662 169 55 72 chr6 125161553 125161917 -64117637 - MLT1C LTR MaLR -103 364 6 2489 54 3 3 chr6 125162176 125162470 -64117084 + AluY SINE Alu 1 294 -17 2312 69 28 3 chr6 125162901 125163191 -64116363 + AluY SINE Alu 1 297 -14 407 179 343 0 chr6 125163595 125163729 -64115825 + MER5A DNA MER1_type 4 183 -6 1434 209 21 11 chr6 125164685 125164972 -64114582 - AluJo SINE Alu -21 291 2 1415 94 47 0 chr6 125165347 125165539 -64114015 - AluSg/x SINE Alu -10 300 100 2044 123 31 0 chr6 125167349 125167642 -64111912 - AluSx SINE Alu -10 302 1 1514 186 7 4 chr6 125167691 125167965 -64111589 - AluJo SINE Alu -37 275 1 2371 44 55 3 chr6 125168020 125168313 -64111241 + AluY SINE Alu 1 308 -3 273 315 94 34 chr6 125169804 125169953 -64109601 + L3 LINE CR1 235 392 -1185 2283 168 40 24 chr6 125169966 125170024 -64109530 - MER65C LTR ERV1 -1 460 404 2949 160 62 49 chr6 125170024 125170129 -64109425 - LTR26E LTR ERV1 0 622 520 1960 172 0 0 chr6 125170129 125170437 -64109117 + AluSx SINE Alu 1 308 -4 2949 160 62 49 chr6 125170437 125170662 -64108892 - LTR26E LTR ERV1 -102 520 299 1425 168 66 21 chr6 125170662 125170948 -64108606 - AluJo SINE Alu -13 299 1 2949 160 62 49 chr6 125170948 125171230 -64108324 - LTR26E LTR ERV1 -323 299 1 2283 168 40 24 chr6 125171230 125171624 -64107930 - MER65C LTR ERV1 -57 404 1 2281 102 3 6 chr6 125171744 125172057 -64107497 - AluSx SINE Alu 0 312 1 227 178 123 55 chr6 125172144 125172217 -64107337 - L1ME4a LINE L1 -69 6052 5975 3415 158 18 67 chr6 125172278 125172995 -64106559 - LTR8 LTR ERV1 -8 683 2 812 176 44 0 chr6 125172996 125173132 -64106422 + FAM SINE Alu 30 171 -14 1405 191 77 18 chr6 125173135 125173408 -64106146 + AluJo SINE Alu 1 289 -23 2234 122 0 6 chr6 125173461 125173772 -64105782 + AluSx SINE Alu 1 309 -3 812 147 0 70 chr6 125173776 125173919 -64105635 + FLAM_C SINE Alu 1 133 0 2039 132 0 0 chr6 125173985 125174272 -64105282 + AluSx SINE Alu 3 289 -23 21 0 0 0 chr6 125174272 125174293 -64105261 + AT_rich Low_complexity Low_complexity 1 21 0 401 153 0 42 chr6 125174737 125174809 -64104745 - AluJ/FLAM SINE Alu -233 69 1 1879 103 28 81 chr6 125176151 125176471 -64103083 - AluSx SINE Alu -9 303 1 2445 93 0 0 chr6 125176480 125176782 -64102772 - AluSc SINE Alu -7 302 1 199 167 24 0 chr6 125177788 125177830 -64101724 + L2 LINE L2 2995 3037 -235 1854 176 0 3 chr6 125178052 125178364 -64101190 - AluSx SINE Alu -1 311 1 255 133 0 0 chr6 125178993 125179038 -64100516 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 268 281 16 0 chr6 125179201 125179265 -64100289 + L2 LINE L2 3208 3272 0 21 0 0 0 chr6 125179920 125179941 -64099613 + AT_rich Low_complexity Low_complexity 1 21 0 240 163 0 0 chr6 125180267 125180310 -64099244 + CT-rich Low_complexity Low_complexity 2 44 0 2086 136 10 10 chr6 125180321 125180631 -64098923 - AluSx SINE Alu -2 310 1 31 26 0 0 chr6 125180637 125180675 -64098879 + AT_rich Low_complexity Low_complexity 1 38 0 1044 177 70 0 chr6 125180681 125180867 -64098687 + MLT1D LTR MaLR 307 505 0 846 116 16 16 chr6 125180902 125181031 -64098523 + FLAM_C SINE Alu 9 137 -6 27 29 0 0 chr6 125181035 125181069 -64098485 + AT_rich Low_complexity Low_complexity 1 34 0 1044 164 6 0 chr6 125181742 125181913 -64097641 - FRAM SINE Alu -1 175 4 853 300 137 26 chr6 125181956 125182369 -64097185 - L3 LINE CR1 -108 1469 982 951 206 72 0 chr6 125182369 125182563 -64096991 + MER3 DNA MER1_type 1 208 -1 853 300 137 26 chr6 125182563 125182682 -64096872 - L3 LINE CR1 -595 982 878 326 248 18 101 chr6 125184228 125184288 -64095266 + MIR3 SINE MIR 101 150 -58 576 278 87 33 chr6 125184288 125184529 -64095025 - MER112 DNA MER1_type 0 256 3 326 248 18 101 chr6 125184529 125184577 -64094977 + MIR3 SINE MIR 150 200 -8 184 339 62 0 chr6 125184835 125184900 -64094654 + L3 LINE CR1 1483 1551 -26 1464 182 36 11 chr6 125185204 125185479 -64094075 + AluJo SINE Alu 1 282 -30 283 61 0 0 chr6 125185754 125185787 -64093767 + Alu SINE Alu 12 44 -256 1554 117 14 0 chr6 125185787 125186001 -64093553 + AluSg/x SINE Alu 92 308 -4 2048 127 7 23 chr6 125186250 125186550 -64093004 + AluSq SINE Alu 1 295 -18 1619 132 47 4 chr6 125186550 125186670 -64092884 + AluSx SINE Alu 1 114 -198 189 0 0 0 chr6 125186670 125186691 -64092863 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1619 132 47 4 chr6 125186691 125186804 -64092750 + AluSx SINE Alu 114 245 -67 653 173 0 0 chr6 125186906 125187010 -64092544 - AluJb SINE Alu -207 105 2 1881 163 10 7 chr6 125187137 125187431 -64092123 + AluJb SINE Alu 1 295 -17 777 99 20 106 chr6 125188335 125188431 -64091123 - AluJo SINE Alu -174 138 58 2255 101 3 3 chr6 125188431 125188728 -64090826 - AluSp SINE Alu -16 297 1 777 99 20 106 chr6 125188728 125188782 -64090772 - AluJo SINE Alu -254 58 1 2233 114 0 16 chr6 125189138 125189453 -64090101 + AluSx SINE Alu 1 310 -2 1635 188 12 38 chr6 125189630 125189950 -64089604 + AluJb SINE Alu 1 312 0 2531 103 8 24 chr6 125190823 125191193 -64088361 - THE1B LTR MaLR 0 364 1 1622 185 17 26 chr6 125191811 125192113 -64087441 + AluJo SINE Alu 1 299 -13 24 32 0 0 chr6 125192691 125192722 -64086832 + AT_rich Low_complexity Low_complexity 1 31 0 417 138 0 0 chr6 125193528 125193593 -64085961 - AluSp/q SINE Alu -17 296 232 2443 92 0 3 chr6 125193680 125193994 -64085560 - AluSq SINE Alu 0 313 1 568 119 0 0 chr6 125194125 125194209 -64085345 - AluJ/FLAM SINE Alu -223 89 6 3080 163 78 25 chr6 125194215 125194369 -64085185 - L1MC3 LINE L1 -130 7655 7511 2264 105 7 0 chr6 125194369 125194665 -64084889 - AluSx SINE Alu -14 298 1 3080 163 78 25 chr6 125194665 125195148 -64084406 - L1MC3 LINE L1 -274 7511 6984 256 293 43 0 chr6 125195275 125195391 -64084163 - L1ME LINE L1 -348 5773 5653 28 0 0 0 chr6 125196452 125196480 -64083074 + GC_rich Low_complexity Low_complexity 1 28 0 207 217 43 0 chr6 125196653 125196722 -64082832 + (CCCG)n Simple_repeat Simple_repeat 3 74 0 28 48 0 0 chr6 125196905 125196947 -64082607 + GC_rich Low_complexity Low_complexity 1 42 0 396 266 59 40 chr6 125198325 125198590 -64080964 - L1ME3A LINE L1 -231 5939 5674 342 0 0 0 chr6 125199002 125199040 -64080514 + (T)n Simple_repeat Simple_repeat 1 38 0 307 236 8 20 chr6 125199400 125199522 -64080032 + MER91A DNA MER1_type 26 190 0 192 246 123 0 chr6 125200026 125200083 -64079471 - MIR SINE MIR -102 106 43 315 282 45 0 chr6 125200120 125200230 -64079324 - MIR SINE MIR -48 214 100 27 0 0 0 chr6 125200280 125200307 -64079247 + AT_rich Low_complexity Low_complexity 1 27 0 703 103 0 94 chr6 125200307 125200424 -64079130 - U6 snRNA snRNA -1 106 1 2318 95 13 0 chr6 125201401 125201707 -64077847 - AluSg SINE Alu 0 310 1 2427 78 0 7 chr6 125202131 125202439 -64077115 + AluY SINE Alu 1 306 -5 223 288 38 0 chr6 125202839 125202919 -64076635 - MIR3 SINE MIR -15 193 111 284 209 148 0 chr6 125203092 125203207 -64076347 + L1M LINE L1 5295 5426 -2569 2405 83 0 3 chr6 125203462 125203763 -64075791 + AluSc SINE Alu 1 300 -9 986 261 134 7 chr6 125204332 125204631 -64074923 - MER58B DNA MER1_type 0 341 5 766 224 135 21 chr6 125204677 125204869 -64074685 + MLT1A2 LTR MaLR 1 169 -205 435 209 127 0 chr6 125205580 125205714 -64073840 - MER5C DNA MER1_type -157 167 17 1849 164 3 0 chr6 125206342 125206635 -64072919 + AluJo SINE Alu 1 294 -18 939 261 59 107 chr6 125206789 125207284 -64072270 + MER45C DNA AcHobo 1 471 -482 1982 137 0 29 chr6 125209419 125209725 -64069829 - AluJb SINE Alu -15 297 1 21 71 0 0 chr6 125210128 125210170 -64069384 + AT_rich Low_complexity Low_complexity 1 42 0 311 210 99 48 chr6 125210824 125210982 -64068572 - MIR SINE MIR -56 206 37 21 36 0 0 chr6 125211837 125211865 -64067689 + AT_rich Low_complexity Low_complexity 1 28 0 403 198 151 16 chr6 125211876 125212002 -64067552 + MIR SINE MIR 56 198 -64 368 43 0 0 chr6 125212008 125212054 -64067500 - MADE1 DNA Mariner -34 46 1 237 132 19 38 chr6 125212057 125212110 -64067444 + MIR SINE MIR 211 262 0 620 282 180 14 chr6 125212123 125212589 -64066965 - L2 LINE L2 0 3313 2709 477 261 199 14 chr6 125213266 125213477 -64066077 - MIR SINE MIR 0 262 13 23 0 0 0 chr6 125213835 125213858 -64065696 + AT_rich Low_complexity Low_complexity 1 23 0 33 118 0 0 chr6 125213892 125214079 -64065475 + AT_rich Low_complexity Low_complexity 1 187 0 779 236 80 9 chr6 125215865 125216077 -64063477 + MIR SINE MIR 1 227 -35 3019 87 154 15 chr6 125216080 125216541 -64063013 + LTR17 LTR ERV1 256 780 0 32260 52 14 7 chr6 125216541 125222496 -64057058 + HERV17 LTR ERV1 1 6019 -2607 267 77 0 0 chr6 125222489 125222528 -64057026 + HERV17 LTR ERV1 7510 7548 -1078 * 2072 91 3 0 chr6 125222518 125222805 -64056749 + HERV17 LTR ERV1 8335 8622 -4 2664 34 0 0 chr6 125222809 125223136 -64056418 + LTR17 LTR ERV1 1 327 -453 216 0 0 0 chr6 125223138 125223162 -64056392 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 240 213 0 0 chr6 125223224 125223285 -64056269 - L1ME4a LINE L1 -1 6120 6060 414 348 28 11 chr6 125223521 125223702 -64055852 + MIR SINE MIR 48 231 -31 787 149 8 22 chr6 125223712 125223846 -64055708 - FLAM_A SINE Alu 0 133 2 240 111 0 0 chr6 125224135 125224171 -64055383 + (T)n Simple_repeat Simple_repeat 1 36 0 298 116 0 0 chr6 125224261 125224304 -64055250 - L1P4 LINE L1 -308 5857 5815 2219 104 0 0 chr6 125224373 125224662 -64054892 - AluSc SINE Alu -20 289 1 2238 95 39 0 chr6 125224662 125225000 -64054554 - L1PA14 LINE L1 -332 5829 5479 1570 115 13 0 chr6 125225000 125225217 -64054337 + L1PA14 LINE L1 5914 6142 -19 1916 160 0 3 chr6 125225242 125225542 -64054012 + AluJb SINE Alu 1 299 -13 728 170 127 84 chr6 125225678 125225845 -64053709 - Zaphod DNA AcHobo -45 3986 3828 1494 205 0 18 chr6 125225845 125226149 -64053405 - AluJb SINE Alu 0 303 5 728 170 127 84 chr6 125226149 125226350 -64053204 - Zaphod DNA AcHobo -203 3828 3601 21 0 0 0 chr6 125226377 125226398 -64053156 + AT_rich Low_complexity Low_complexity 1 21 0 2205 122 3 0 chr6 125226443 125226747 -64052807 + AluSp SINE Alu 1 305 -8 3717 158 108 48 chr6 125226748 125228142 -64051412 + L1MC1 LINE L1 4375 5859 -474 1922 154 14 0 chr6 125228146 125228438 -64051116 - AluJo SINE Alu -16 296 1 544 180 0 45 chr6 125228438 125228549 -64051005 - AluJo SINE Alu -8 304 199 267 167 0 50 chr6 125228554 125228614 -64050940 - AluJo SINE Alu -159 143 87 1444 145 55 10 chr6 125228614 125228904 -64050650 + L1MC1 LINE L1 5847 6149 -184 837 169 0 0 chr6 125228904 125229028 -64050526 + AluJb SINE Alu 1 124 -188 1149 152 15 5 chr6 125229033 125229231 -64050323 + L1MC1 LINE L1 6134 6333 0 2426 62 0 0 chr6 125229274 125229565 -64049989 - AluY SINE Alu -20 291 1 469 272 44 17 chr6 125229612 125229865 -64049689 + L1ME2 LINE L1 5889 6310 -24 336 220 187 0 chr6 125229905 125229996 -64049558 - FRAM SINE Alu 0 166 59 347 235 37 25 chr6 125230099 125230180 -64049374 - L2 LINE L2 -321 2992 2911 277 125 0 0 chr6 125230297 125230337 -64049217 - U2 snRNA snRNA -148 40 1 374 268 87 8 chr6 125230340 125230467 -64049087 + MIR SINE MIR 80 216 -46 436 260 30 0 chr6 125230490 125230590 -64048964 + L2 LINE L2 3200 3302 -11 315 207 24 37 chr6 125231095 125231177 -64048377 - MLT1G1 LTR MaLR -16 579 499 1094 162 17 81 chr6 125231388 125231622 -64047932 + MER20 DNA MER1_type 1 219 0 993 124 0 0 chr6 125234235 125234372 -64045182 - FLAM_C SINE Alu -6 137 1 319 280 261 8 chr6 125236622 125236817 -64042737 + MIR SINE MIR 12 249 -13 377 237 21 31 chr6 125238291 125238388 -64041166 + MIR SINE MIR 45 140 -68 1877 108 51 14 chr6 125238491 125238787 -64040767 - AluSx SINE Alu -5 307 1 23 33 0 0 chr6 125239460 125239490 -64040064 + AT_rich Low_complexity Low_complexity 1 30 0 506 358 89 15 chr6 125239817 125240359 -64039195 - L1MC4 LINE L1 -138 7904 7323 212 0 36 0 chr6 125240359 125240387 -64039167 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 330 241 120 94 chr6 125240463 125241020 -64038534 - L1MC5 LINE L1 -753 7208 6713 189 0 0 0 chr6 125241101 125241122 -64038432 + (T)n Simple_repeat Simple_repeat 1 21 0 222 191 0 0 chr6 125241511 125241558 -64037996 + (TG)n Simple_repeat Simple_repeat 1 47 0 260 219 35 44 chr6 125243251 125243365 -64036189 - L1ME LINE L1 -248 5873 5761 256 313 45 22 chr6 125243819 125243953 -64035601 - L2 LINE L2 -191 3081 2945 22 0 0 0 chr6 125244538 125244560 -64034994 + AT_rich Low_complexity Low_complexity 1 22 0 186 258 16 48 chr6 125244639 125244701 -64034853 + L2 LINE L2 2330 2389 -925 444 312 100 4 chr6 125244734 125244965 -64034589 + L2 LINE L2 2480 2732 -582 1587 200 64 11 chr6 125244966 125245420 -64034134 - Charlie1b DNA MER1_type -9 514 37 485 302 77 58 chr6 125245424 125245928 -64033626 + L2 LINE L2 2742 3258 -55 404 257 0 10 chr6 125246569 125246670 -64032884 - L2 LINE L2 -4 3309 3210 225 310 46 11 chr6 125246997 125247084 -64032470 - MIR SINE MIR -91 171 82 2075 142 20 0 chr6 125247451 125247746 -64031808 + AluSx SINE Alu 1 301 -11 2145 98 0 53 chr6 125247753 125248071 -64031483 + AluSx SINE Alu 5 305 -7 2731 129 141 16 chr6 125248261 125248639 -64030915 + Tigger3(Golem) DNA MER2_type 2230 2706 -322 188 86 29 0 chr6 125248639 125248674 -64030880 + (CTCA)n Simple_repeat Simple_repeat 4 39 0 2731 129 141 16 chr6 125248674 125248870 -64030684 + Tigger3(Golem) DNA MER2_type 2706 2876 -152 412 215 188 0 chr6 125249450 125249594 -64029960 - MLT1J2 LTR MaLR -276 174 4 1997 125 7 0 chr6 125249638 125249937 -64029617 + AluSx SINE Alu 1 301 0 569 246 75 11 chr6 125249970 125250157 -64029397 - MIR SINE MIR -10 252 54 229 260 29 48 chr6 125250171 125250275 -64029279 + MIR SINE MIR 161 262 0 195 276 68 129 chr6 125250493 125250833 -64028721 + L2 LINE L2 2937 3255 -17 238 355 56 0 chr6 125250907 125251014 -64028540 - MIR SINE MIR 0 262 150 1419 90 7 35 chr6 125251014 125251432 -64028122 - MER4C LTR ERV1 0 465 1 225 247 14 14 chr6 125251432 125251505 -64028049 - MIR SINE MIR -109 153 81 255 276 129 60 chr6 125252754 125252870 -64026684 - MIR3 SINE MIR -48 160 37 293 239 0 0 chr6 125253214 125253285 -64026269 - L2 LINE L2 -11 3261 3191 2253 112 0 0 chr6 125253417 125253720 -64025834 - AluSq SINE Alu -9 304 2 305 278 35 26 chr6 125253962 125254077 -64025477 - L1 LINE L1 -2402 3744 3629 21 0 0 0 chr6 125254091 125254112 -64025442 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 125254752 125254781 -64024773 + AT_rich Low_complexity Low_complexity 1 29 0 330 318 226 10 chr6 125255110 125255522 -64024032 + L2 LINE L2 1836 2336 -978 279 242 176 0 chr6 125256427 125256518 -64023036 + MIR3 SINE MIR 87 193 -15 202 111 0 67 chr6 125258441 125258486 -64021068 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 30 0 0 0 chr6 125258666 125258696 -64020858 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr6 125258774 125258817 -64020737 + AT_rich Low_complexity Low_complexity 1 43 0 504 237 218 0 chr6 125260701 125260857 -64018697 - L2 LINE L2 -620 2694 2505 1746 228 111 15 chr6 125260866 125261335 -64018219 - L2 LINE L2 -1005 2309 1796 906 151 0 0 chr6 125261403 125261529 -64018025 + FLAM_C SINE Alu 1 126 -17 2346 87 0 6 chr6 125261537 125261848 -64017706 + AluSg SINE Alu 1 309 -1 265 220 62 112 chr6 125261851 125262092 -64017462 - L2 LINE L2 -1601 1713 1485 233 307 105 9 chr6 125262357 125262471 -64017083 + L3 LINE CR1 1388 1512 -65 2271 115 0 3 chr6 125262613 125262917 -64016637 + AluSx SINE Alu 1 303 -9 2012 100 33 0 chr6 125263402 125263699 -64015855 + AluSg1 SINE Alu 3 308 0 365 271 82 53 chr6 125264369 125264539 -64015015 - MIR3 SINE MIR -25 183 9 22 0 0 0 chr6 125265017 125265039 -64014515 + AT_rich Low_complexity Low_complexity 1 22 0 1088 141 87 0 chr6 125265039 125265224 -64014330 - AluJb SINE Alu -25 287 87 461 238 84 26 chr6 125265227 125265431 -64014123 - L1MC4a LINE L1 0 7995 7587 800 208 79 8 chr6 125265516 125265757 -64013797 - L1MC4a LINE L1 -223 7585 7328 34 55 0 14 chr6 125265948 125265963 -64013591 + AT_rich Low_complexity Low_complexity 1 15 -57 2106 80 15 0 chr6 125265963 125266225 -64013329 + AluY SINE Alu 26 291 -20 34 55 0 14 chr6 125266225 125266282 -64013272 + AT_rich Low_complexity Low_complexity 15 72 0 21 36 0 0 chr6 125266413 125266441 -64013113 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 125267371 125267392 -64012162 + AT_rich Low_complexity Low_complexity 1 21 0 1801 108 93 0 chr6 125268036 125268294 -64011260 + AluSx SINE Alu 1 282 -30 299 203 0 0 chr6 125269886 125269945 -64009609 - Tigger3(Golem) DNA MER2_type -1 3028 2970 311 253 48 0 chr6 125270963 125271046 -64008508 + L1MC4 LINE L1 6610 6696 -1346 2159 127 0 0 chr6 125271046 125271338 -64008216 - AluSx SINE Alu -20 292 1 260 311 126 67 chr6 125272169 125272439 -64007115 + L3 LINE CR1 925 1210 -367 21 36 0 0 chr6 125272518 125272546 -64007008 + AT_rich Low_complexity Low_complexity 1 28 0 2160 83 0 0 chr6 125272979 125273255 -64006299 - AluY SINE Alu -35 276 1 776 192 280 22 chr6 125273265 125273580 -64005974 - L1MC4a LINE L1 -487 7398 7006 21 36 0 0 chr6 125273980 125274008 -64005546 + AT_rich Low_complexity Low_complexity 1 28 0 1957 152 25 39 chr6 125274544 125274952 -64004602 - L1MA4A LINE L1 -2 6301 5900 2144 96 0 30 chr6 125275784 125276085 -64003469 + AluSq SINE Alu 1 292 -21 2263 92 3 7 chr6 125276552 125276846 -64002708 - AluSg SINE Alu -15 295 3 1263 156 19 47 chr6 125277678 125277934 -64001620 + AluJo SINE Alu 47 295 -17 267 260 146 0 chr6 125279329 125279452 -64000102 + MER103 DNA DNA 3 143 -23 1390 196 15 60 chr6 125280044 125280498 -63999056 + L1 LINE L1 4970 5403 -743 510 142 183 8 chr6 125280538 125280658 -63998896 + L1MA9 LINE L1 6168 6308 -4 21 0 0 0 chr6 125280987 125281008 -63998546 + AT_rich Low_complexity Low_complexity 1 21 0 270 197 106 0 chr6 125281122 125281187 -63998367 + Tigger5 DNA MER2_type 7 78 -2245 333 215 13 13 chr6 125281187 125281266 -63998288 - Tigger5 DNA MER2_type -3 2320 2242 * 334 153 0 17 chr6 125281264 125281323 -63998231 + Tigger5 DNA MER2_type 2266 2323 0 191 288 0 68 chr6 125282910 125282983 -63996571 + L2 LINE L2 3204 3271 -1 982 131 0 0 chr6 125285039 125285176 -63994378 + FLAM_C SINE Alu 1 137 -6 1763 176 23 10 chr6 125285179 125285485 -63994069 + AluJo SINE Alu 1 310 -2 2115 113 20 3 chr6 125286495 125286796 -63992758 + AluSx SINE Alu 1 306 -6 1854 143 24 7 chr6 125288073 125288366 -63991188 + AluJb SINE Alu 1 298 -14 2341 89 3 0 chr6 125289971 125290273 -63989281 + AluSp SINE Alu 1 303 -10 25 31 0 0 chr6 125290383 125290415 -63989139 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr6 125290859 125290888 -63988666 + AT_rich Low_complexity Low_complexity 1 29 0 604 94 0 0 chr6 125291051 125291136 -63988418 + AluJ/FLAM SINE Alu 1 85 -227 1957 132 48 0 chr6 125291202 125291497 -63988057 - AluSc SINE Alu 0 309 1 30 59 0 0 chr6 125291987 125292038 -63987516 + AT_rich Low_complexity Low_complexity 1 51 0 2172 113 3 7 chr6 125293092 125293393 -63986161 - AluSq SINE Alu -13 300 1 233 307 105 9 chr6 125293535 125293649 -63985905 - L3 LINE CR1 -65 1512 1388 237 218 71 113 chr6 125293914 125294153 -63985401 + L2 LINE L2 1485 1713 -1601 2390 87 0 6 chr6 125294156 125294468 -63985086 - AluSg SINE Alu 0 310 1 906 151 0 0 chr6 125294476 125294602 -63984952 - FLAM_C SINE Alu -17 126 1 1827 231 331 9 chr6 125294670 125295579 -63983975 + L2 LINE L2 1796 3034 -279 5960 130 11 14 chr6 125295582 125296757 -63982797 + L1PB1 LINE L1 4435 5611 -540 2459 64 3 13 chr6 125296757 125297070 -63982484 + AluY SINE Alu 1 310 -1 5960 130 11 14 chr6 125297070 125297609 -63981945 + L1PB1 LINE L1 5611 6145 -6 2337 89 7 0 chr6 125297609 125297901 -63981653 - AluSx SINE Alu -18 294 1 810 246 66 29 chr6 125297925 125298038 -63981516 + L2 LINE L2 3032 3139 -174 1873 159 9 25 chr6 125298038 125298353 -63981201 - AluJo SINE Alu -2 310 1 1765 184 0 10 chr6 125298360 125298669 -63980885 - AluJo SINE Alu 0 312 7 810 246 66 29 chr6 125298669 125298819 -63980735 + L2 LINE L2 3144 3313 0 785 226 56 26 chr6 125299026 125299260 -63980294 + L1MC4a LINE L1 6442 6682 -1126 232 119 51 85 chr6 125299604 125299663 -63979891 - MLT1K LTR MaLR -15 573 517 612 287 86 25 chr6 125299711 125300025 -63979529 - MLT1K LTR MaLR -246 342 10 452 255 71 26 chr6 125300039 125300306 -63979248 - L1ME4a LINE L1 -274 5847 5569 1240 118 52 66 chr6 125300423 125300472 -63979082 - L1MB3 LINE L1 0 6183 6135 567 226 8 32 chr6 125300472 125300596 -63978958 - FLAM_A SINE Alu -8 125 5 1240 118 52 66 chr6 125300596 125300835 -63978719 - L1MB3 LINE L1 -48 6135 5899 357 229 76 34 chr6 125300837 125300955 -63978599 - L1ME4a LINE L1 -697 5424 5302 216 188 0 43 chr6 125301015 125301084 -63978470 + T-rich Low_complexity Low_complexity 3 68 0 275 152 0 0 chr6 125301084 125301130 -63978424 - MER57A LTR ERV1 -67 336 291 23 54 0 0 chr6 125301131 125301168 -63978386 + AT_rich Low_complexity Low_complexity 1 37 0 322 155 0 0 chr6 125301174 125301227 -63978327 - MLT1A1 LTR MaLR 0 365 312 1922 160 0 7 chr6 125301227 125301521 -63978033 - AluJb SINE Alu -20 292 1 2057 118 0 11 chr6 125301565 125301852 -63977702 - AluSx SINE Alu -28 284 1 1456 192 24 39 chr6 125301852 125302106 -63977448 - MLT1A1 LTR MaLR -37 328 79 2231 112 3 10 chr6 125302106 125302411 -63977143 - AluSx SINE Alu -9 303 1 1456 192 24 39 chr6 125302411 125302489 -63977065 - MLT1A1 LTR MaLR -286 79 1 2497 57 3 0 chr6 125302666 125302966 -63976588 + AluY SINE Alu 1 301 -10 1901 167 0 0 chr6 125302976 125303269 -63976285 + AluJb SINE Alu 1 293 -19 1172 152 70 25 chr6 125303269 125303482 -63976072 - Tigger2 DNA MER2_type -4 2714 2487 1903 149 7 10 chr6 125303482 125303784 -63975770 - AluJo SINE Alu -11 301 1 1172 152 70 25 chr6 125303784 125303813 -63975741 - Tigger2 DNA MER2_type -231 2487 2461 1105 141 5 0 chr6 125303864 125304048 -63975506 - Tigger2 DNA MER2_type -1961 757 573 3247 161 80 18 chr6 125304048 125304720 -63974834 - MER72 LTR ERV1 0 722 9 3004 148 23 21 chr6 125304724 125305299 -63974255 - Tigger2 DNA MER2_type -2142 576 1 739 209 0 16 chr6 125305619 125305748 -63973806 - FLAM_A SINE Alu -15 127 1 489 281 172 8 chr6 125305794 125306154 -63973400 - HAL1b LINE L1 -524 824 406 688 368 37 14 chr6 125306154 125306646 -63972908 - ERVL LTR ERVL -4487 1277 775 2122 118 0 3 chr6 125307071 125307368 -63972186 + AluSc SINE Alu 1 296 -13 991 222 157 30 chr6 125307429 125307798 -63971756 + MER20B DNA MER1_type 92 507 -276 22 0 0 0 chr6 125308366 125308388 -63971166 + AT_rich Low_complexity Low_complexity 1 22 0 2203 106 0 20 chr6 125308413 125308716 -63970838 - AluSg SINE Alu -12 298 2 477 63 16 0 chr6 125308741 125308804 -63970750 + AluS SINE Alu 26 89 -224 222 192 0 0 chr6 125309505 125309557 -63969997 + (TATG)n Simple_repeat Simple_repeat 1 52 0 21 0 0 0 chr6 125309745 125309766 -63969788 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 125310288 125310315 -63969239 + AT_rich Low_complexity Low_complexity 1 27 0 1399 136 23 0 chr6 125310857 125311078 -63968476 + MER30 DNA MER1_type 1 226 -4 489 326 148 26 chr6 125311566 125312082 -63967472 + MLT1G LTR MaLR 16 590 0 362 378 47 16 chr6 125312467 125312912 -63966642 - ERVL LTR ERVL -1138 4626 4168 853 299 49 31 chr6 125313280 125313732 -63965822 - L1ME LINE L1 -376 5794 5335 386 286 75 25 chr6 125313733 125313974 -63965580 - L1ME LINE L1 -913 5233 4981 216 135 0 0 chr6 125314299 125314336 -63965218 + (TG)n Simple_repeat Simple_repeat 1 37 0 854 250 96 15 chr6 125314633 125315136 -63964418 - MLT1E3 LTR MaLR 0 624 51 1176 251 133 3 chr6 125315242 125315565 -63963989 + MLT1A1 LTR MaLR 1 365 0 1968 133 77 29 chr6 125315910 125316016 -63963538 - L1MA2 LINE L1 -23 6281 6182 2114 123 0 7 chr6 125316016 125316325 -63963229 - AluY SINE Alu -3 308 2 1968 133 77 29 chr6 125316325 125316633 -63962921 - L1MA2 LINE L1 -122 6182 5847 1377 198 131 45 chr6 125316704 125317153 -63962401 - MLT1D LTR MaLR -17 488 1 902 205 73 15 chr6 125318189 125318394 -63961160 + MER58A DNA MER1_type 8 224 0 603 232 40 10 chr6 125318674 125318872 -63960682 - MER113 DNA MER1_type? -314 207 4 205 303 225 11 chr6 125319021 125319199 -63960355 + L3b LINE CR1 1162 1377 -206 442 333 75 10 chr6 125319518 125319719 -63959835 - MIR SINE MIR -21 241 28 347 60 0 0 chr6 125321103 125321153 -63958401 - L1MA3 LINE L1 -5 6300 6251 1210 251 7 7 chr6 125321152 125321451 -63958103 - AluJb SINE Alu -13 299 1 304 338 45 25 chr6 125321462 125321660 -63957894 + L1M4 LINE L1 2610 2811 -3335 527 139 10 0 chr6 125322091 125322192 -63957362 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 6814 150 36 40 chr6 125322219 125323520 -63956034 + Tigger1 DNA MER2_type 4 1299 -1119 3784 72 16 8 chr6 125324426 125324951 -63954603 + L1PA7 LINE L1 5638 6166 0 777 311 92 10 chr6 125325279 125325758 -63953796 - L1ME3A LINE L1 -2 6168 5651 527 224 32 82 chr6 125326159 125326378 -63953176 + L2 LINE L2 3103 3310 -3 744 267 180 66 chr6 125328041 125328468 -63951086 + MLT2F LTR ERVL 186 661 -2 218 307 40 0 chr6 125328659 125328734 -63950820 - L2 LINE L2 -673 2641 2564 260 125 0 0 chr6 125328945 125328985 -63950569 - MADE1 DNA Mariner -40 40 1 639 211 47 42 chr6 125329656 125329846 -63949708 - L1M2 LINE L1 -596 5695 5505 483 165 94 16 chr6 125329868 125329995 -63949559 + L1MD2 LINE L1 5739 5875 -484 4508 182 2 4 chr6 125329995 125330791 -63948763 - ERVL LTR ERVL -340 5424 4630 288 0 0 0 chr6 125330803 125330835 -63948719 + (TG)n Simple_repeat Simple_repeat 2 33 0 1510 184 26 7 chr6 125330839 125331144 -63948410 + ERVL LTR ERVL 5443 5753 -11 500 215 92 56 chr6 125331004 125331199 -63948355 + Ricksha DNA DNA 185 386 -1660 * 685 80 0 180 chr6 125331202 125331352 -63948202 - MER1B DNA MER1_type 0 339 217 395 214 21 62 chr6 125332040 125332185 -63947369 + Charlie2 DNA MER1_type 1959 2097 -765 2179 95 3 0 chr6 125333343 125333638 -63945916 + AluY SINE Alu 1 296 -15 314 262 67 60 chr6 125333773 125333922 -63945632 - L1ME3A LINE L1 -446 5675 5526 3120 54 6 0 chr6 125334031 125334662 -63944892 + L1P2 LINE L1 5015 5649 -505 1601 161 0 0 chr6 125334802 125335045 -63944509 - AluSq SINE Alu -70 243 1 373 316 128 26 chr6 125335084 125335435 -63944119 - L1M4 LINE L1 -3613 2533 2147 200 108 0 27 chr6 125335528 125335565 -63943989 + (GA)n Simple_repeat Simple_repeat 1 36 0 29 28 0 0 chr6 125335781 125335817 -63943737 + AT_rich Low_complexity Low_complexity 1 36 0 2057 96 0 0 chr6 125335819 125336100 -63943454 - L1PA14 LINE L1 -14 6147 5867 1841 164 0 3 chr6 125336272 125336564 -63942990 - AluJb SINE Alu -15 297 7 238 313 90 22 chr6 125337226 125337360 -63942194 + MIR SINE MIR 64 206 -56 264 143 43 0 chr6 125338236 125338306 -63941248 + (TA)n Simple_repeat Simple_repeat 1 73 0 222 91 0 0 chr6 125338307 125338340 -63941214 + (TG)n Simple_repeat Simple_repeat 2 34 0 382 319 45 0 chr6 125338673 125338830 -63940724 + LTR50 LTR ERVL 1 164 -631 305 235 94 0 chr6 125338980 125339065 -63940489 + MLT1E1 LTR MaLR 5 97 -557 525 231 240 4 chr6 125339092 125339399 -63940155 + MLT1E1 LTR MaLR 178 411 -243 195 42 0 0 chr6 125339399 125339423 -63940131 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 525 231 240 4 chr6 125339423 125339465 -63940089 + MLT1E1 LTR MaLR 411 649 -5 648 285 0 22 chr6 125339682 125339861 -63939693 - MIR SINE MIR -56 206 32 24 0 0 0 chr6 125340041 125340065 -63939489 + AT_rich Low_complexity Low_complexity 1 24 0 1833 131 54 14 chr6 125340366 125340663 -63938891 + AluSg SINE Alu 1 309 -1 22 0 0 0 chr6 125340841 125340863 -63938691 + AT_rich Low_complexity Low_complexity 1 22 0 1622 162 4 4 chr6 125341113 125341384 -63938170 - L1MB1 LINE L1 -150 6018 5748 1193 165 9 104 chr6 125341382 125341565 -63937989 + L1MA10 LINE L1 6046 6188 -146 * 2251 154 8 11 chr6 125341565 125341941 -63937613 - THE1C LTR MaLR 0 375 1 1193 165 9 104 chr6 125341941 125342073 -63937481 + L1MA10 LINE L1 6188 6331 -3 1482 204 102 6 chr6 125342279 125342631 -63936923 + MLT1B LTR MaLR 1 386 -4 302 197 120 49 chr6 125343592 125343734 -63935820 + LTR50 LTR ERVL 638 789 -6 2018 95 0 0 chr6 125344140 125344402 -63935152 + AluSc SINE Alu 31 292 -17 518 258 66 20 chr6 125346229 125346427 -63933127 + MER3 DNA MER1_type 3 209 0 1337 224 31 14 chr6 125346535 125346821 -63932733 - AluJb SINE Alu -9 303 13 346 94 31 0 chr6 125346948 125347012 -63932542 + GA-rich Low_complexity Low_complexity 3 68 0 893 217 139 43 chr6 125347183 125347497 -63932057 + MLT1A2 LTR MaLR 27 467 0 23 0 0 0 chr6 125348744 125348767 -63930787 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 125348937 125348959 -63930595 + AT_rich Low_complexity Low_complexity 1 22 0 2067 111 14 7 chr6 125349235 125349523 -63930031 + AluSx SINE Alu 3 292 -20 243 61 0 0 chr6 125349841 125349874 -63929680 + (TG)n Simple_repeat Simple_repeat 2 34 0 322 338 90 23 chr6 125351205 125351471 -63928083 + HAL1 LINE L1 1368 1651 -856 604 231 23 79 chr6 125351668 125351884 -63927670 - MLT1A1 LTR MaLR -5 360 157 445 240 160 2 chr6 125354427 125354591 -63924963 + MIR SINE MIR 9 192 -61 291 206 81 119 chr6 125354884 125355044 -63924510 - MIR3 SINE MIR -46 162 9 336 277 145 24 chr6 125355087 125355253 -63924301 - MER5A DNA MER1_type 0 189 4 352 359 0 21 chr6 125355483 125355628 -63923926 + MER91A DNA MER1_type 55 196 0 271 254 0 0 chr6 125357562 125357621 -63921933 + MIR SINE MIR 93 151 -111 467 279 161 6 chr6 125359211 125359372 -63920182 - MIR3 SINE MIR -3 205 20 241 224 20 0 chr6 125359620 125359669 -63919885 + GA-rich Low_complexity Low_complexity 4 53 0 556 282 235 10 chr6 125360275 125360569 -63918985 - MLT1J2 LTR MaLR -18 432 73 2242 172 57 18 chr6 125361076 125361513 -63918041 + MLT1C LTR MaLR 11 464 -3 24 0 0 0 chr6 125361949 125361973 -63917581 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 125362253 125362282 -63917272 + AT_rich Low_complexity Low_complexity 1 29 0 739 296 84 12 chr6 125362316 125362637 -63916917 - MER115 DNA AcHobo 0 693 350 7391 38 2 0 chr6 125363307 125364246 -63915308 + L1PA4 LINE L1 5213 6153 -2 1766 60 0 17 chr6 125364246 125364480 -63915074 + L1P3 LINE L1 5432 5661 -493 2042 115 44 10 chr6 125364735 125365030 -63914524 - AluSx SINE Alu -7 305 1 22 35 0 0 chr6 125365126 125365155 -63914399 + AT_rich Low_complexity Low_complexity 1 29 0 983 220 23 5 chr6 125365659 125365877 -63913677 + MER58 DNA MER1_type 1 222 -2198 29 0 0 0 chr6 125367628 125367657 -63911897 + AT_rich Low_complexity Low_complexity 1 29 0 2726 20 0 0 chr6 125367827 125368132 -63911422 - AluYa5 SINE Alu -6 305 1 260 191 26 9 chr6 125368206 125368321 -63911233 + (TA)n Simple_repeat Simple_repeat 1 117 0 2019 149 0 0 chr6 125368321 125368609 -63910945 - AluSx SINE Alu -24 288 1 1831 121 0 32 chr6 125368909 125369190 -63910364 + AluSq SINE Alu 13 284 -29 1361 132 0 0 chr6 125369297 125369494 -63910060 + AluSg/x SINE Alu 107 303 -7 23 33 0 0 chr6 125369916 125369946 -63909608 + AT_rich Low_complexity Low_complexity 1 30 0 2134 128 3 0 chr6 125370135 125370432 -63909122 + AluJb SINE Alu 1 298 -14 703 133 124 0 chr6 125370660 125370773 -63908781 - FLAM_C SINE Alu -16 127 1 491 161 32 0 chr6 125370773 125370866 -63908688 - L1MB4 LINE L1 -39 6141 6046 675 152 7 43 chr6 125370885 125371023 -63908531 - FLAM_C SINE Alu 0 133 1 325 299 38 13 chr6 125371035 125371192 -63908362 - L1ME LINE L1 -369 5752 5592 751 201 101 6 chr6 125371637 125371806 -63907748 - LTR41 LTR ERVL -585 188 4 1103 247 5 0 chr6 125372499 125372722 -63906832 - MER58A DNA MER1_type 0 224 1 678 143 19 0 chr6 125373498 125373603 -63905951 - AluSx SINE Alu -15 297 191 1005 106 0 0 chr6 125373604 125373736 -63905818 - AluSx SINE Alu -181 132 1 1584 187 11 4 chr6 125374145 125374423 -63905131 + AluJb SINE Alu 1 280 -32 1125 159 6 0 chr6 125374580 125374743 -63904811 + FRAM SINE Alu 1 164 -2 207 286 0 0 chr6 125374970 125375019 -63904535 - L3b LINE CR1 -13 1570 1522 1463 276 222 18 chr6 125375104 125376209 -63903345 + L2 LINE L2 1974 3311 -2 1456 117 28 0 chr6 125376566 125376779 -63902775 + AluJb SINE Alu 84 302 -10 8222 50 11 1 chr6 125376798 125377754 -63901800 - LTR5 LTR ERVK -3 966 1 211 93 47 0 chr6 125377755 125377798 -63901756 + GA-rich Low_complexity Low_complexity 4 48 0 24 32 0 0 chr6 125377844 125377875 -63901679 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr6 125378507 125378529 -63901025 + (T)n Simple_repeat Simple_repeat 1 22 0 24 0 0 0 chr6 125378677 125378701 -63900853 + AT_rich Low_complexity Low_complexity 1 24 0 279 0 0 0 chr6 125378982 125379013 -63900541 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 347 263 82 107 chr6 125379078 125379321 -63900233 + L1ME LINE L1 508 744 -5786 * 558 174 141 0 chr6 125379313 125379434 -63900120 + L1ME LINE L1 1854 1991 -4549 2334 63 7 0 chr6 125379444 125379776 -63899778 + AluSg SINE Alu 1 310 0 907 119 0 8 chr6 125379781 125379907 -63899647 + AluSq/x SINE Alu 1 125 -188 281 150 67 0 chr6 125379907 125379967 -63899587 + Alu SINE Alu 238 301 -1 1325 7 27 0 chr6 125380207 125380353 -63899201 + L1PA4 LINE L1 6004 6153 -2 285 296 112 16 chr6 125380495 125380620 -63898934 + MIR SINE MIR 69 205 -57 427 206 65 19 chr6 125381450 125381557 -63897997 + MIR SINE MIR 39 150 -112 2433 63 7 0 chr6 125381610 125381909 -63897645 - AluSx SINE Alu -11 301 1 393 226 54 11 chr6 125382071 125382164 -63897390 - MIR SINE MIR -55 153 57 1179 191 46 25 chr6 125383041 125383282 -63896272 - AluJo SINE Alu -66 246 1 23 0 0 29 chr6 125383282 125383298 -63896256 + AT_rich Low_complexity Low_complexity 1 16 -17 2310 89 0 0 chr6 125383298 125383590 -63895964 - AluSg SINE Alu -18 292 1 23 0 0 29 chr6 125383590 125383607 -63895947 + AT_rich Low_complexity Low_complexity 16 33 0 21 0 0 0 chr6 125383741 125383762 -63895792 + AT_rich Low_complexity Low_complexity 1 21 0 1784 143 35 18 chr6 125384638 125384924 -63894630 - AluJb SINE Alu -19 293 3 2466 74 3 0 chr6 125386206 125386502 -63893052 + AluY SINE Alu 1 297 -14 1852 114 4 0 chr6 125386515 125386769 -63892785 + AluSp SINE Alu 6 260 -53 39 0 0 0 chr6 125387221 125387260 -63892294 + AT_rich Low_complexity Low_complexity 1 39 0 2332 69 7 7 chr6 125389238 125389529 -63890025 + AluY SINE Alu 1 291 -20 576 137 66 93 chr6 125389968 125390150 -63889404 + MER104 DNA MER2_type 1 177 -3 2094 135 0 26 chr6 125390886 125391198 -63888356 - AluSx SINE Alu -8 304 1 314 197 0 0 chr6 125391610 125391671 -63887883 - MLT1E1 LTR MaLR -6 648 588 989 216 148 43 chr6 125391742 125392047 -63887507 - MLT1E LTR MaLR -256 337 1 779 187 0 8 chr6 125392100 125392223 -63887331 + FLAM_A SINE Alu 1 122 -11 2535 40 7 13 chr6 125392258 125392559 -63886995 + AluY SINE Alu 1 299 -12 602 115 48 0 chr6 125392788 125392892 -63886662 + AluSg/x SINE Alu 198 306 -4 21 82 0 0 chr6 125392998 125393047 -63886507 + AT_rich Low_complexity Low_complexity 1 49 0 1513 149 9 102 chr6 125393354 125393669 -63885885 + AluY SINE Alu 1 286 -25 1168 162 39 1 chr6 125393734 125393756 -63885798 - L1MA4 LINE L1 -33 6279 6259 1751 131 0 0 chr6 125393756 125394001 -63885553 - AluJb SINE Alu -67 245 1 1168 162 39 1 chr6 125394001 125394208 -63885346 - L1MA4 LINE L1 -53 6259 6035 2223 120 0 0 chr6 125394208 125394507 -63885047 - AluSq SINE Alu -11 302 4 1887 111 0 0 chr6 125394540 125394783 -63884771 - AluSq SINE Alu -24 289 47 1499 184 35 14 chr6 125394861 125395143 -63884411 - AluJo SINE Alu -24 288 1 1194 169 70 48 chr6 125395143 125395416 -63884138 - L1 LINE L1 -3353 3029 2751 1673 197 24 3 chr6 125395423 125395718 -63883836 - AluJb SINE Alu -11 301 1 869 132 0 0 chr6 125395718 125395839 -63883715 - AluJo SINE Alu -176 136 16 1684 196 46 25 chr6 125395843 125396524 -63883030 - L1 LINE L1 -3637 2745 1657 1562 196 59 0 chr6 125396631 125396901 -63882653 - AluJo SINE Alu -12 290 5 2293 114 0 0 chr6 125397108 125397406 -63882148 - AluSg SINE Alu -12 298 1 3172 156 26 9 chr6 125397456 125398034 -63881520 - L1MB3 LINE L1 -4 6179 5592 375 310 62 0 chr6 125399179 125399292 -63880262 - L2 LINE L2 -1 3312 3193 2389 106 60 23 chr6 125400141 125400490 -63879064 + THE1B LTR MaLR 1 362 -2 652 151 91 134 chr6 125400652 125400838 -63878716 - MER5B DNA MER1_type 0 178 1 2285 88 44 0 chr6 125400952 125401246 -63878308 - AluY SINE Alu -4 307 1 779 197 113 0 chr6 125401492 125401634 -63877920 + FRAM SINE Alu 1 158 -8 5626 142 15 22 chr6 125401744 125402756 -63876798 - L1MA4 LINE L1 -4 6296 5278 2160 115 0 3 chr6 125402756 125403052 -63876502 + AluSq SINE Alu 1 295 -18 5626 142 15 22 chr6 125403052 125403176 -63876378 - L1MA4 LINE L1 -1022 5278 5155 2227 117 7 0 chr6 125403176 125403484 -63876070 - AluSx SINE Alu -2 310 1 5626 142 15 22 chr6 125403484 125403950 -63875604 - L1MA4 LINE L1 -1145 5155 4775 1051 103 14 7 chr6 125404514 125404659 -63874895 - THE1B LTR MaLR -218 146 1 9252 89 7 1 chr6 125404659 125405869 -63873685 - THE1B-int LTR MaLR 0 1580 364 4231 48 21 0 chr6 125405869 125406349 -63873205 - LTR2B LTR ERV1 0 490 1 25149 111 11 3 chr6 125406349 125409275 -63870279 - Harlequin LTR ERV1 0 6896 3937 180 0 0 0 chr6 125409275 125409295 -63870259 + (TTA)n Simple_repeat Simple_repeat 2 21 0 25149 111 11 3 chr6 125409295 125409886 -63869668 - Harlequin LTR ERV1 -2959 3937 3352 5551 50 111 70 chr6 125409885 125410849 -63868705 - Harlequin LTR ERV1 -4322 2574 1572 * 5062 54 10 3 chr6 125410842 125411470 -63868084 - Harlequin LTR ERV1 -6003 893 262 * 2694 101 5 0 chr6 125411465 125411843 -63867711 - Harlequin LTR ERV1 -6516 380 1 * 4119 45 29 19 chr6 125411843 125412328 -63867226 - LTR2B LTR ERV1 0 490 1 2287 90 76 6 chr6 125412328 125412671 -63866883 - THE1B-int LTR MaLR -1213 367 1 2340 107 38 41 chr6 125412671 125413036 -63866518 - THE1B LTR MaLR 0 364 1 387 308 86 0 chr6 125413713 125413830 -63865724 + MIR SINE MIR 12 138 -124 2687 125 5 10 chr6 125413890 125414282 -63865272 + MLT1B LTR MaLR 1 390 0 2313 99 0 7 chr6 125414327 125414630 -63864924 + AluSx SINE Alu 1 301 -11 2201 90 37 3 chr6 125414630 125414930 -63864624 + AluY SINE Alu 1 310 -1 576 123 94 0 chr6 125415525 125415631 -63863923 - L1MA8 LINE L1 -2 6289 6174 2243 108 0 0 chr6 125415691 125415986 -63863568 + AluSq SINE Alu 1 295 -18 297 329 24 0 chr6 125416100 125416185 -63863369 - L2 LINE L2 -42 3230 3144 381 230 54 47 chr6 125416292 125416440 -63863114 - HAL1 LINE L1 -1913 594 446 1024 174 0 6 chr6 125416608 125416786 -63862768 - AluYa8 SINE Alu -9 301 125 1392 106 0 5 chr6 125416787 125416976 -63862578 - AluSg/x SINE Alu -1 311 124 2408 71 10 10 chr6 125416976 125417287 -63862267 - AluY SINE Alu 0 311 1 264 283 177 9 chr6 125417383 125417496 -63862058 + L2 LINE L2 3134 3265 -7 2029 130 7 0 chr6 125418142 125418435 -63861119 + AluSx SINE Alu 1 295 -17 1673 159 21 14 chr6 125418747 125419036 -63860518 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr6 125420434 125420455 -63859099 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 125420729 125420762 -63858792 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr6 125420986 125421008 -63858546 + AT_rich Low_complexity Low_complexity 1 22 0 5154 130 52 17 chr6 125422263 125423204 -63856350 + MER11B LTR ERVK 30 1169 -97 442 250 142 20 chr6 125423253 125423401 -63856153 + MER5B DNA MER1_type 1 166 -12 2135 98 18 3 chr6 125424321 125424607 -63854947 + AluSx SINE Alu 1 290 -22 1179 126 0 37 chr6 125424851 125425041 -63854513 - AluSg/x SINE Alu 0 310 128 2125 134 0 6 chr6 125425051 125425365 -63854189 - AluSx SINE Alu 0 312 1 2158 122 6 6 chr6 125425406 125425718 -63853836 - AluSx SINE Alu 0 312 1 1748 156 60 17 chr6 125426307 125426627 -63852927 - L1PA16 LINE L1 0 6166 5828 2372 89 3 3 chr6 125426627 125426940 -63852614 - AluSp SINE Alu 0 313 1 1748 156 60 17 chr6 125426940 125426966 -63852588 - L1PA16 LINE L1 -338 5828 5805 1589 206 17 0 chr6 125427008 125427331 -63852223 + AluJo SINE Alu 1 312 0 332 321 151 48 chr6 125427706 125428123 -63851431 - L2 LINE L2 -1 3271 2812 351 149 108 0 chr6 125428286 125428360 -63851194 + MIR SINE MIR 58 139 -123 186 211 26 0 chr6 125428361 125428399 -63851155 + L2 LINE L2 3252 3290 -23 1443 153 4 4 chr6 125428552 125428787 -63850767 - MER46A DNA MER2_type -1 235 1 22 35 0 0 chr6 125428855 125428884 -63850670 + AT_rich Low_complexity Low_complexity 1 29 0 228 67 0 0 chr6 125429354 125429384 -63850170 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 498 202 119 28 chr6 125429384 125429482 -63850072 - L2 LINE L2 -13 3300 3190 3726 27 25 0 chr6 125429495 125429941 -63849613 - L1PA6 LINE L1 0 6154 5698 1573 106 9 0 chr6 125430062 125430289 -63849265 - MER47A DNA MER2_type -130 236 8 4053 124 54 64 chr6 125430629 125431422 -63848132 - LTR1 LTR ERV1 0 785 1 1654 144 57 4 chr6 125432079 125432343 -63847211 + AluJb SINE Alu 5 282 -30 21 0 0 0 chr6 125433094 125433115 -63846439 + AT_rich Low_complexity Low_complexity 1 21 0 2437 54 10 0 chr6 125433508 125433802 -63845752 - AluY SINE Alu -14 297 1 2025 129 10 0 chr6 125434259 125434554 -63845000 - AluSx SINE Alu -12 300 3 923 158 0 0 chr6 125434740 125434879 -63844675 + AluJb SINE Alu 162 300 -12 1288 237 128 34 chr6 125435924 125436470 -63843084 + MLT1G3 LTR MaLR 1 530 0 1801 170 7 0 chr6 125436548 125436836 -63842718 - AluJo SINE Alu -10 302 13 228 238 0 0 chr6 125437382 125437424 -63842130 + MER1B DNA MER1_type 2 43 -294 1511 100 52 9 chr6 125437444 125437654 -63841900 + MER1B DNA MER1_type 121 339 0 1928 132 50 0 chr6 125437658 125437939 -63841615 + AluSx SINE Alu 3 297 -15 2339 101 0 7 chr6 125438080 125438387 -63841167 + AluSx SINE Alu 1 305 -7 509 138 11 23 chr6 125439189 125439276 -63840278 - AluJb SINE Alu -18 294 209 1243 218 18 47 chr6 125439304 125439382 -63840172 - L1ME1 LINE L1 -175 5991 5912 654 214 15 0 chr6 125439382 125439513 -63840041 + FLAM_A SINE Alu 1 133 0 1243 218 18 47 chr6 125439513 125439774 -63839780 - L1ME1 LINE L1 -254 5912 5662 1934 67 0 0 chr6 125439774 125440012 -63839542 - AluY SINE Alu 0 311 74 697 65 187 0 chr6 125440019 125440126 -63839428 - AluY SINE Alu -184 127 1 413 230 0 0 chr6 125440128 125440215 -63839339 - L1ME1 LINE L1 -503 5663 5577 2295 56 52 0 chr6 125440268 125440555 -63838999 - AluSp SINE Alu -11 302 1 541 239 0 62 chr6 125440601 125440777 -63838777 + L1ME1 LINE L1 5928 6092 -74 2269 93 0 17 chr6 125440879 125441181 -63838373 + AluSg SINE Alu 1 297 -13 910 118 65 12 chr6 125441191 125441361 -63838193 + L1MA3 LINE L1 5981 6159 -146 475 310 0 0 chr6 125441402 125441518 -63838036 - MIR SINE MIR -61 147 32 1310 110 0 6 chr6 125441528 125441774 -63837780 - AluSq SINE Alu -13 300 1 2283 79 10 0 chr6 125441774 125442064 -63837490 - AluSp SINE Alu -20 293 1 265 146 0 0 chr6 125442110 125442151 -63837403 - MER106A DNA MER1_type 0 236 196 313 247 41 31 chr6 125442187 125442284 -63837270 - MER106B DNA MER1_type -913 146 49 1847 168 0 10 chr6 125442352 125442649 -63836905 - AluJo SINE Alu -18 294 1 310 269 33 142 chr6 125442758 125442970 -63836584 + MIR3 SINE MIR 19 207 -1 2270 96 10 3 chr6 125444693 125444986 -63834568 - AluSg SINE Alu -15 295 1 1969 139 7 0 chr6 125445677 125445996 -63833558 - AluSx SINE Alu 0 321 1 2470 68 0 0 chr6 125446565 125446859 -63832695 - AluY SINE Alu -17 294 1 2336 145 58 23 chr6 125447336 125447818 -63831736 - L1MA3 LINE L1 -1 6304 5806 3077 129 53 15 chr6 125447824 125448491 -63831063 + L1MA3 LINE L1 5134 5825 -480 1760 151 47 0 chr6 125448989 125449268 -63830286 + AluJb SINE Alu 7 298 -14 702 191 46 8 chr6 125449969 125450100 -63829454 - AluJo SINE Alu -176 136 1 1909 154 0 4 chr6 125450474 125450754 -63828800 - AluJb SINE Alu -22 290 12 2077 118 3 0 chr6 125450754 125451041 -63828513 - AluSx SINE Alu -24 288 1 579 158 29 72 chr6 125451041 125451180 -63828374 - FLAM_A SINE Alu -5 137 5 21 0 0 0 chr6 125453761 125453782 -63825772 + AT_rich Low_complexity Low_complexity 1 21 0 2409 70 0 0 chr6 125453782 125454069 -63825485 - AluY SINE Alu -24 287 1 22 35 0 0 chr6 125454083 125454112 -63825442 + AT_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr6 125454378 125454433 -63825121 + AT_rich Low_complexity Low_complexity 1 55 0 2339 94 0 3 chr6 125455176 125455474 -63824080 - AluSq SINE Alu -16 297 1 2153 135 3 0 chr6 125455625 125455936 -63823618 - AluSx SINE Alu 0 312 1 24 0 0 0 chr6 125456172 125456196 -63823358 + AT_rich Low_complexity Low_complexity 1 24 0 262 339 32 40 chr6 125456536 125456660 -63822894 + L2 LINE L2 3190 3312 -1 237 275 43 14 chr6 125456665 125456734 -63822820 + L3 LINE CR1 437 507 -1070 24 0 0 0 chr6 125456802 125456826 -63822728 + AT_rich Low_complexity Low_complexity 1 24 0 2153 204 32 13 chr6 125458205 125458670 -63820884 + L1ME1 LINE L1 5479 5952 -226 245 267 0 0 chr6 125458716 125458776 -63820778 + L1ME1 LINE L1 5941 6000 -166 702 234 15 25 chr6 125458789 125458986 -63820568 + L1MB8 LINE L1 5982 6176 -2 267 319 0 0 chr6 125459158 125459252 -63820302 - L1ME LINE L1 -391 5730 5637 301 305 91 13 chr6 125459283 125459437 -63820117 - L1ME LINE L1 -547 5574 5409 360 0 0 0 chr6 125460011 125460051 -63819503 + (T)n Simple_repeat Simple_repeat 1 40 0 493 301 15 8 chr6 125460589 125460722 -63818832 + MIR SINE MIR 10 143 -119 381 289 139 22 chr6 125460879 125461059 -63818495 - MIR SINE MIR -5 257 57 2138 97 3 39 chr6 125462738 125463046 -63816508 - AluSx SINE Alu -15 297 1 309 299 46 37 chr6 125463929 125464085 -63815469 + L1MDa LINE L1 655 808 -5615 2486 60 0 0 chr6 125464085 125464383 -63815171 + AluY SINE Alu 1 298 -13 309 299 46 37 chr6 125464383 125464485 -63815069 + L1MDa LINE L1 808 972 -5451 577 225 136 9 chr6 125464502 125464719 -63814835 + L1MDa LINE L1 2175 2461 -841 * 1540 197 97 86 chr6 125464716 125465240 -63814314 + L1ME2 LINE L1 5571 6103 -61 2300 94 0 0 chr6 125465240 125465528 -63814026 - AluSx SINE Alu -24 288 1 1540 197 97 86 chr6 125465528 125465582 -63813972 + L1ME2 LINE L1 6103 6155 -9 234 321 0 12 chr6 125467049 125467133 -63812421 + HAL1b LINE L1 402 484 -864 1738 216 233 44 chr6 125467194 125467917 -63811637 + L2 LINE L2 724 3312 -1 181 338 14 0 chr6 125468019 125468090 -63811464 - L2 LINE L2 0 3313 3242 618 240 93 13 chr6 125468195 125468345 -63811209 - FAM SINE Alu -12 163 2 1960 141 7 0 chr6 125468687 125468991 -63810563 + AluSx SINE Alu 1 306 -6 538 201 10 136 chr6 125469379 125469578 -63809976 - FAM SINE Alu -3 46 1 1137 163 9 50 chr6 125469579 125469800 -63809754 - AluJb SINE Alu -100 212 1 719 149 0 64 chr6 125469809 125469950 -63809604 - FLAM_C SINE Alu 0 133 2 1837 148 3 17 chr6 125470362 125470652 -63808902 - AluJb SINE Alu -26 286 1 810 145 8 0 chr6 125471288 125471412 -63808142 - FAM SINE Alu -43 142 18 280 298 82 61 chr6 125471739 125471984 -63807570 - MIR SINE MIR 0 262 13 350 179 63 32 chr6 125472071 125472166 -63807388 - MIR SINE MIR -74 188 91 1675 172 7 40 chr6 125472286 125472582 -63806972 - AluJo SINE Alu -23 289 4 319 277 149 28 chr6 125472969 125473218 -63806336 + L1ME4a LINE L1 5773 6051 -70 2025 130 0 3 chr6 125473695 125473987 -63805567 - AluSx SINE Alu -2 310 20 23 33 0 0 chr6 125476898 125476928 -63802626 + AT_rich Low_complexity Low_complexity 1 30 0 295 184 44 30 chr6 125476957 125477071 -63802483 - MIR SINE MIR -10 252 90 36 23 0 0 chr6 125478061 125478104 -63801450 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr6 125478845 125478874 -63800680 + AT_rich Low_complexity Low_complexity 1 29 0 2473 64 0 3 chr6 125479109 125479407 -63800147 + AluY SINE Alu 1 297 -14 303 200 12 82 chr6 125479548 125479633 -63799921 + MER63 DNA MER1_type 676 754 -306 360 250 26 0 chr6 125479635 125479711 -63799843 + MER63 DNA MER1_type 983 1060 0 27 73 0 0 chr6 125480071 125480126 -63799428 + AT_rich Low_complexity Low_complexity 1 55 0 940 173 6 25 chr6 125480166 125480328 -63799226 - FAM SINE Alu -16 159 1 204 40 0 0 chr6 125481219 125481244 -63798310 + (A)n Simple_repeat Simple_repeat 1 25 0 687 245 65 74 chr6 125481626 125481949 -63797605 + L1MC4a LINE L1 5567 5886 -1922 1880 173 0 3 chr6 125482169 125482475 -63797079 - AluJo SINE Alu -7 305 1 21 36 0 0 chr6 125482586 125482614 -63796940 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 125482701 125482731 -63796823 + AT_rich Low_complexity Low_complexity 1 30 0 2332 111 0 0 chr6 125482800 125483107 -63796447 + AluSx SINE Alu 1 307 -5 198 71 0 0 chr6 125483118 125483146 -63796408 + (A)n Simple_repeat Simple_repeat 1 28 0 22 56 0 0 chr6 125483765 125483801 -63795753 + AT_rich Low_complexity Low_complexity 1 36 0 1366 181 68 3 chr6 125484186 125484523 -63795031 - Charlie5 DNA MER1_type 0 2623 2265 589 155 69 0 chr6 125484535 125484651 -63794903 - Charlie5 DNA MER1_type -2488 124 1 1568 137 0 54 chr6 125484994 125485271 -63794283 - AluJo SINE Alu -13 299 38 21 0 0 0 chr6 125486324 125486345 -63793209 + AT_rich Low_complexity Low_complexity 1 21 0 215 347 132 52 chr6 125487334 125487547 -63792007 - L2 LINE L2 -73 3199 2970 1504 281 89 83 chr6 125487565 125488576 -63790978 - L2 LINE L2 -658 2656 1640 217 309 60 0 chr6 125490413 125490497 -63789057 - L3 LINE CR1 -208 1369 1281 1064 60 0 0 chr6 125490871 125491004 -63788550 + AluY SINE Alu 173 305 -6 475 251 181 55 chr6 125491004 125491535 -63788019 + L1ME4a LINE L1 5497 6094 -27 2236 81 21 0 chr6 125491544 125491829 -63787725 - AluSc SINE Alu -18 291 1 22 56 0 0 chr6 125491845 125491881 -63787673 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 125492191 125492212 -63787342 + AT_rich Low_complexity Low_complexity 1 21 0 343 211 108 5 chr6 125492212 125492318 -63787236 - L1MA9 LINE L1 -25 6274 6155 1509 139 28 8 chr6 125492398 125492649 -63786905 - L1MC1 LINE L1 0 6333 6078 1803 170 10 0 chr6 125493097 125493257 -63786297 - AluJo SINE Alu -20 292 126 2330 95 0 10 chr6 125493257 125493562 -63785992 - AluSq SINE Alu -11 302 1 1803 170 10 0 chr6 125493562 125493690 -63785864 - AluJo SINE Alu -186 126 1 1783 186 3 3 chr6 125499029 125499335 -63780219 - AluJo SINE Alu -6 306 1 24 32 0 0 chr6 125500118 125500149 -63779405 + AT_rich Low_complexity Low_complexity 1 31 0 937 322 134 8 chr6 125500211 125500720 -63778834 - L3 LINE CR1 -19 1558 986 2404 66 0 20 chr6 125501953 125502257 -63777297 - AluY SINE Alu -13 298 1 193 252 46 92 chr6 125502378 125502509 -63777045 + MER5A DNA MER1_type 10 134 -55 5371 161 24 43 chr6 125503857 125504873 -63774681 + L1MA3 LINE L1 31 1026 -6539 7299 121 34 11 chr6 125504873 125507101 -63772453 + L1MA3 LINE L1 5459 7724 0 451 216 110 84 chr6 125507122 125507604 -63771950 + L1ME LINE L1 4987 5452 -712 2085 207 91 89 chr6 125508041 125508416 -63771138 + L1MB5 LINE L1 5387 5760 -414 2318 105 0 0 chr6 125508416 125508720 -63770834 - AluSx SINE Alu -8 304 1 2085 207 91 89 chr6 125508720 125509121 -63770433 + L1MB5 LINE L1 5760 6165 -9 2327 86 13 10 chr6 125511426 125511729 -63767825 - AluSc SINE Alu -2 307 4 25 51 0 0 chr6 125511735 125511774 -63767780 + AT_rich Low_complexity Low_complexity 1 39 0 2161 123 0 3 chr6 125512765 125513065 -63766489 - AluSx SINE Alu -13 299 1 568 180 0 20 chr6 125513390 125513490 -63766064 + AluJo SINE Alu 81 178 -134 929 252 0 5 chr6 125513490 125513700 -63765854 + AluJb SINE Alu 87 295 -17 1224 182 12 2 chr6 125513884 125514128 -63765426 + AluJb SINE Alu 1 290 -22 21 36 0 0 chr6 125514151 125514179 -63765375 + AT_rich Low_complexity Low_complexity 1 28 0 4519 163 61 11 chr6 125514183 125514329 -63765225 + L1MB7 LINE L1 4870 5007 -1177 1507 181 0 0 chr6 125514329 125514567 -63764987 + AluJo SINE Alu 44 281 -31 4519 163 61 11 chr6 125514567 125515178 -63764376 + L1MB7 LINE L1 5007 5586 -598 2372 52 14 3 chr6 125515178 125515468 -63764086 + AluY SINE Alu 1 293 -18 4519 163 61 11 chr6 125515468 125515949 -63763605 + L1MB7 LINE L1 5586 6175 -9 2112 253 143 0 chr6 125515957 125516644 -63762910 - Zaphod DNA AcHobo -3191 840 56 331 221 67 39 chr6 125517433 125517537 -63762017 + MIR SINE MIR 48 154 -108 940 67 8 0 chr6 125517546 125517665 -63761889 + AluSq/x SINE Alu 1 120 -193 884 241 98 27 chr6 125518257 125518585 -63760969 - HAL1 LINE L1 0 2507 2157 502 243 184 48 chr6 125518592 125518756 -63760798 + MIR SINE MIR 2 201 -61 1687 176 96 11 chr6 125518756 125519119 -63760435 + MSTD LTR MaLR 3 396 0 502 243 184 48 chr6 125519119 125519160 -63760394 + MIR SINE MIR 201 235 -27 189 74 0 0 chr6 125519183 125519210 -63760344 + (CAT)n Simple_repeat Simple_repeat 2 28 0 267 345 107 45 chr6 125520086 125520440 -63759114 + L2 LINE L2 2442 2817 -497 255 291 108 104 chr6 125520474 125520790 -63758764 + L2 LINE L2 2935 3251 -21 374 266 112 30 chr6 125520838 125521007 -63758547 - L3 LINE CR1 -693 884 702 * 705 172 16 8 chr6 125521005 125521133 -63758421 + L2 LINE L2 3184 3312 -1 2034 134 3 0 chr6 125521974 125522265 -63757289 + AluJb SINE Alu 3 294 -18 316 296 179 37 chr6 125522304 125522527 -63757027 + MIR SINE MIR 7 256 -6 2054 99 6 93 chr6 125523430 125523764 -63755790 + AluSq SINE Alu 1 305 -8 1462 159 63 73 chr6 125523917 125524219 -63755335 - AluJo SINE Alu -13 299 1 4928 156 87 90 chr6 125524307 125524977 -63754577 + L1MC3 LINE L1 6439 7110 -675 283 141 31 78 chr6 125524977 125525041 -63754513 + MLT1F1 LTR MaLR 50 110 -457 4928 156 87 90 chr6 125525041 125525635 -63753919 + L1MC3 LINE L1 7110 7765 -20 2298 86 0 0 chr6 125525635 125525936 -63753618 - AluSx SINE Alu 0 303 3 4928 156 87 90 chr6 125525936 125525957 -63753597 + L1MC3 LINE L1 7765 7785 0 2079 119 3 3 chr6 125526016 125526301 -63753253 - AluSg SINE Alu -25 285 1 794 126 0 0 chr6 125526430 125526573 -63752981 + L1MC3 LINE L1 6959 7101 -684 216 97 0 0 chr6 125526625 125526656 -63752898 + (A)n Simple_repeat Simple_repeat 1 31 0 28 0 0 0 chr6 125526939 125526967 -63752587 + AT_rich Low_complexity Low_complexity 1 28 0 1889 143 94 0 chr6 125527051 125527358 -63752196 - MER1B DNA MER1_type -3 336 1 1685 177 61 0 chr6 125527523 125527817 -63751737 + AluJb SINE Alu 1 312 0 608 279 20 5 chr6 125527970 125528167 -63751387 - L1ME LINE L1 -369 5801 5602 * 2198 202 51 38 chr6 125528161 125528957 -63750597 - L1ME1 LINE L1 -320 5846 5053 1909 133 0 11 chr6 125528961 125529232 -63750322 - AluSx SINE Alu -14 298 31 2052 171 110 59 chr6 125529237 125529661 -63749893 - LTR28 LTR ERV1 -2 634 199 2173 139 0 0 chr6 125529661 125529971 -63749583 + AluSx SINE Alu 1 310 -2 2052 171 110 59 chr6 125529971 125530181 -63749373 - LTR28 LTR ERV1 -437 199 1 11880 155 25 48 chr6 125530183 125531867 -63747687 - HUERS-P3b LTR ERV1 -1 6995 5274 2826 7 0 0 chr6 125531867 125532171 -63747383 - AluYa5 SINE Alu -6 305 2 11880 155 25 48 chr6 125532171 125533198 -63746356 - HUERS-P3b LTR ERV1 -1722 5274 4225 1836 147 33 17 chr6 125533198 125533497 -63746057 + AluSx SINE Alu 1 304 -8 11880 155 25 48 chr6 125533497 125535074 -63744480 - HUERS-P3b LTR ERV1 -2771 4225 632 213 349 60 12 chr6 125535767 125535850 -63743704 + L2 LINE L2 3149 3235 -37 862 176 23 11 chr6 125535874 125536050 -63743504 - LTR36 LTR ERV1 0 611 434 293 116 0 0 chr6 125536105 125536148 -63743406 - LTR36 LTR ERV1 -276 335 293 226 253 27 0 chr6 125536205 125536280 -63743274 - LTR36 LTR ERV1 -335 276 200 225 0 0 0 chr6 125536343 125536368 -63743186 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 231 36 0 0 chr6 125536384 125536412 -63743142 + (GA)n Simple_repeat Simple_repeat 1 28 0 1581 174 0 21 chr6 125536415 125536696 -63742858 - AluJo SINE Alu -37 275 1 2191 119 0 0 chr6 125536706 125537001 -63742553 - AluSx SINE Alu -17 295 1 261 256 61 0 chr6 125537051 125537133 -63742421 + MIR SINE MIR 111 197 -65 2145 129 7 3 chr6 125538627 125538937 -63740617 - AluSx SINE Alu -1 311 1 23 0 0 0 chr6 125539102 125539125 -63740429 + AT_rich Low_complexity Low_complexity 1 23 0 2182 101 3 7 chr6 125539173 125539470 -63740084 - AluSx SINE Alu -16 296 1 1901 150 3 7 chr6 125539579 125539873 -63739681 + AluJb SINE Alu 3 295 -17 674 192 8 0 chr6 125540100 125540220 -63739334 + FLAM_C SINE Alu 9 129 -14 1565 199 4 0 chr6 125540303 125540565 -63738989 + AluJb SINE Alu 48 310 -2 386 264 157 10 chr6 125540765 125540962 -63738592 - MIR SINE MIR -15 247 22 3624 118 11 9 chr6 125542162 125542687 -63736867 + MER1A DNA MER1_type 2 527 0 22 0 0 0 chr6 125543032 125543054 -63736500 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 125543177 125543199 -63736355 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr6 125543337 125543379 -63736175 + AT_rich Low_complexity Low_complexity 1 42 0 1610 149 62 38 chr6 125544425 125544714 -63734840 - AluJo SINE Alu -16 296 1 694 198 32 0 chr6 125546616 125546742 -63732812 + FLAM_A SINE Alu 1 130 -3 486 165 157 58 chr6 125547167 125547288 -63732266 + AluJo SINE Alu 1 133 -169 477 183 226 0 chr6 125547731 125547846 -63731708 - FLAM_C SINE Alu -2 141 1 398 294 6 69 chr6 125547996 125548156 -63731398 - MIR SINE MIR -56 206 57 368 299 43 17 chr6 125548865 125548982 -63730572 - MIR SINE MIR -50 212 93 1880 162 0 17 chr6 125548982 125549278 -63730276 + AluJb SINE Alu 1 291 -21 1070 180 0 0 chr6 125549380 125549552 -63730002 + AluJo SINE Alu 136 307 -5 568 246 133 47 chr6 125549618 125549653 -63729901 + MIR SINE MIR 2 33 -229 2346 103 0 0 chr6 125549653 125549955 -63729599 + AluSq SINE Alu 1 302 -11 568 246 133 47 chr6 125549955 125550130 -63729424 + MIR SINE MIR 33 230 -32 2253 115 0 6 chr6 125550663 125551021 -63728533 - AluSx SINE Alu 0 356 1 234 91 0 0 chr6 125551027 125551060 -63728494 + (T)n Simple_repeat Simple_repeat 1 33 0 3136 252 49 31 chr6 125551073 125552222 -63727332 + L2 LINE L2 2003 3313 0 2224 102 7 0 chr6 125553205 125553500 -63726054 - AluSx SINE Alu -15 297 1 1880 164 3 13 chr6 125554624 125554923 -63724631 - AluJb SINE Alu -16 296 1 232 423 42 0 chr6 125555943 125556111 -63723443 - MIR SINE MIR -70 192 18 241 320 13 100 chr6 125556156 125556306 -63723248 - MIR SINE MIR -24 184 47 378 171 0 0 chr6 125556967 125557037 -63722517 + CT-rich Low_complexity Low_complexity 4 73 0 779 175 0 0 chr6 125557222 125557342 -63722212 - FLAM_C SINE Alu -13 120 1 355 310 21 56 chr6 125557542 125557684 -63721870 - MIR SINE MIR -73 189 53 303 316 189 31 chr6 125557774 125558002 -63721552 - L2 LINE L2 -24 3289 3026 2504 131 0 6 chr6 125558245 125558611 -63720943 - THE1B LTR MaLR 0 364 1 9847 100 33 35 chr6 125558611 125559743 -63719811 - THE1B-int LTR MaLR 0 1580 450 6973 54 11 8 chr6 125559743 125560866 -63718688 - L1PA7 LINE L1 -4 6150 5025 9847 100 33 35 chr6 125560866 125561316 -63718238 - THE1B-int LTR MaLR -1130 450 1 2690 110 0 0 chr6 125561316 125561680 -63717874 - THE1B LTR MaLR 0 364 1 767 171 8 0 chr6 125561749 125561872 -63717682 - FLAM_C SINE Alu -9 124 1 315 238 38 0 chr6 125562725 125562805 -63716749 + L2 LINE L2 3192 3274 -39 221 250 154 29 chr6 125562975 125563079 -63716475 - MIR SINE MIR -95 167 51 227 157 39 0 chr6 125563761 125563812 -63715742 - MER20B DNA MER1_type -57 726 674 266 173 49 12 chr6 125563849 125563930 -63715624 - MER20B DNA MER1_type -98 685 602 1395 153 136 0 chr6 125563938 125564246 -63715308 + L1MB3 LINE L1 5832 6181 -2 402 211 13 0 chr6 125564649 125564725 -63714829 - MER2 DNA MER2_type -1 344 268 787 168 174 66 chr6 125564740 125564802 -63714752 + AluJo SINE Alu 84 138 -174 1971 130 0 3 chr6 125564802 125565087 -63714467 + AluSx SINE Alu 28 311 -1 787 168 174 66 chr6 125565087 125565220 -63714334 + AluJo SINE Alu 138 300 -12 776 172 0 0 chr6 125565247 125565369 -63714185 + FLAM_C SINE Alu 1 122 -21 419 53 53 92 chr6 125565382 125565458 -63714096 + U3 snRNA snRNA 2 74 -143 1050 185 20 0 chr6 125565461 125565661 -63713893 - MER2 DNA MER2_type -136 209 6 2453 155 34 2 chr6 125566299 125566712 -63712842 - MSTB LTR MaLR 0 426 1 2043 137 3 0 chr6 125566725 125567018 -63712536 + AluSx SINE Alu 1 294 -18 2014 133 47 21 chr6 125567111 125567450 -63712104 - MER7A DNA MER2_type 0 346 1 2108 131 3 0 chr6 125567898 125568195 -63711359 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr6 125568209 125568231 -63711323 + AT_rich Low_complexity Low_complexity 1 22 0 1975 149 0 7 chr6 125570914 125571210 -63708344 + AluJo SINE Alu 1 294 -18 2498 81 0 0 chr6 125571327 125571637 -63707917 + AluSg SINE Alu 1 310 0 1869 116 56 4 chr6 125572173 125572488 -63707066 + AluSx SINE Alu 1 329 0 407 337 89 15 chr6 125572821 125573159 -63706395 - L2 LINE L2 -655 2659 2297 329 192 135 145 chr6 125573394 125573587 -63705967 + Charlie8 DNA MER1_type 24 214 -2203 964 247 22 13 chr6 125574263 125574494 -63705060 - MIR SINE MIR -28 234 2 2397 78 7 0 chr6 125574815 125575110 -63704444 - AluSx SINE Alu -15 297 1 2169 86 0 7 chr6 125575550 125575830 -63703724 - AluSp SINE Alu -1 312 35 244 282 81 48 chr6 125576186 125576310 -63703244 - L2 LINE L2 -7 3306 3179 1829 148 10 33 chr6 125576706 125577009 -63702545 - AluJb SINE Alu -16 296 1 2144 124 28 0 chr6 125577037 125577327 -63702227 + AluSx SINE Alu 1 298 -14 1226 104 149 45 chr6 125577384 125577653 -63701901 + L1MB7 LINE L1 5888 6184 0 1331 221 21 31 chr6 125577653 125577943 -63701611 + AluJo SINE Alu 1 287 -25 24 0 0 0 chr6 125578193 125578217 -63701337 + AT_rich Low_complexity Low_complexity 1 24 0 220 280 212 30 chr6 125578342 125578578 -63700976 - L2 LINE L2 -1161 2153 1875 606 220 19 25 chr6 125578839 125578998 -63700556 - MIR SINE MIR 0 262 105 307 252 107 29 chr6 125579233 125579336 -63700218 - L2 LINE L2 -1 3271 3161 443 270 72 55 chr6 125579342 125579488 -63700066 - L2 LINE L2 -410 2904 2762 2105 95 46 0 chr6 125579488 125579773 -63699781 + AluY SINE Alu 1 298 -13 443 270 72 55 chr6 125579773 125579933 -63699621 - L2 LINE L2 -552 2762 2593 195 222 93 0 chr6 125580876 125580930 -63698624 + MIR SINE MIR 20 78 -184 1953 186 0 0 chr6 125581244 125581551 -63698003 + AluJb SINE Alu 1 307 -5 2466 88 0 0 chr6 125583573 125583881 -63695673 + AluY SINE Alu 3 310 -1 1846 148 39 3 chr6 125584456 125584740 -63694814 + AluJo SINE Alu 1 294 -18 2351 57 3 41 chr6 125585132 125585448 -63694106 - AluY SINE Alu -7 304 1 764 211 34 11 chr6 125585927 125586102 -63693452 + MIR SINE MIR 84 262 0 2324 60 0 3 chr6 125586167 125586483 -63693071 - AluY SINE Alu 0 315 1 265 254 56 14 chr6 125586644 125586715 -63692839 + L2 LINE L2 3210 3283 -30 2076 122 3 0 chr6 125587031 125587317 -63692237 + AluSx SINE Alu 1 287 -25 1555 157 34 27 chr6 125588005 125588267 -63691287 + AluJb SINE Alu 33 296 -16 2131 178 18 25 chr6 125588355 125588531 -63691023 + L1MB5 LINE L1 5729 5905 -269 1783 158 7 30 chr6 125588531 125588829 -63690725 + AluJb SINE Alu 1 291 -21 2131 178 18 25 chr6 125588829 125589090 -63690464 + L1MB5 LINE L1 5905 6163 -11 25 31 0 0 chr6 125590098 125590130 -63689424 + AT_rich Low_complexity Low_complexity 1 32 0 1985 163 3 3 chr6 125590197 125590492 -63689062 + AluJb SINE Alu 1 295 -17 982 131 0 0 chr6 125592551 125592688 -63686866 + FLAM_C SINE Alu 1 137 -6 1712 177 26 10 chr6 125592691 125592996 -63686558 + AluJo SINE Alu 1 310 -2 2098 113 20 3 chr6 125594006 125594306 -63685248 + AluSx SINE Alu 1 305 -7 1854 143 24 7 chr6 125595583 125595876 -63683678 + AluJb SINE Alu 1 298 -14 2341 89 3 0 chr6 125597481 125597783 -63681771 + AluSp SINE Alu 1 303 -10 25 31 0 0 chr6 125597893 125597925 -63681629 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr6 125598369 125598398 -63681156 + AT_rich Low_complexity Low_complexity 1 29 0 604 106 0 0 chr6 125598561 125598646 -63680908 + AluS SINE Alu 1 85 -227 1957 132 48 0 chr6 125598712 125599007 -63680547 - AluSc SINE Alu 0 309 1 30 59 0 0 chr6 125599497 125599548 -63680006 + AT_rich Low_complexity Low_complexity 1 51 0 2172 113 3 7 chr6 125600602 125600903 -63678651 - AluSq SINE Alu -13 300 1 233 307 105 9 chr6 125601045 125601159 -63678395 - L3 LINE CR1 -65 1512 1388 237 218 71 113 chr6 125601424 125601663 -63677891 + L2 LINE L2 1485 1713 -1601 2390 87 0 6 chr6 125601666 125601978 -63677576 - AluSg SINE Alu 0 310 1 906 151 0 0 chr6 125601986 125602112 -63677442 - FLAM_C SINE Alu -17 126 1 1639 245 109 15 chr6 125602180 125602649 -63676905 + L2 LINE L2 1796 2308 -1006 2109 105 14 3 chr6 125603119 125603404 -63676150 - AluSc SINE Alu -21 288 1 204 179 0 0 chr6 125603549 125603588 -63675966 + (CATA)n Simple_repeat Simple_repeat 2 40 0 411 56 0 0 chr6 125603660 125603714 -63675840 + (TC)n Simple_repeat Simple_repeat 1 54 0 333 47 0 0 chr6 125603714 125603757 -63675797 + (TA)n Simple_repeat Simple_repeat 1 43 0 1936 162 0 3 chr6 125603757 125604053 -63675501 - AluJb SINE Alu -17 295 1 663 274 104 0 chr6 125604104 125604345 -63675209 - MER46C DNA MER2_type -65 273 8 1867 157 7 0 chr6 125604354 125604641 -63674913 - AluJb SINE Alu -22 290 2 427 322 59 32 chr6 125604894 125605149 -63674405 - L1ME LINE L1 -457 5664 5400 23 0 0 0 chr6 125605569 125605592 -63673962 + AT_rich Low_complexity Low_complexity 1 23 0 1980 143 0 14 chr6 125605634 125605927 -63673627 - AluJb SINE Alu -23 289 1 2135 146 0 0 chr6 125605937 125606239 -63673315 - AluSq SINE Alu -11 302 1 188 380 13 25 chr6 125606683 125606762 -63672792 - MIR3 SINE MIR -126 82 5 271 230 14 14 chr6 125607184 125607258 -63672296 + MER45A DNA AcHobo 104 177 -1 2493 128 0 40 chr6 125609852 125610304 -63669250 + HSMAR2 DNA Mariner 2 435 -867 * 4447 114 16 23 chr6 125610298 125610746 -63668808 + HSMAR2 DNA Mariner 581 1024 -278 2229 119 0 0 chr6 125610746 125611041 -63668513 - AluSx SINE Alu -17 295 1 4447 114 16 23 chr6 125611041 125611319 -63668235 + HSMAR2 DNA Mariner 1024 1302 0 24 32 0 0 chr6 125611753 125611784 -63667770 + AT_rich Low_complexity Low_complexity 1 31 0 2222 185 19 31 chr6 125611788 125612176 -63667378 - L1ME1 LINE L1 -5 6161 5779 1778 182 14 3 chr6 125612176 125612473 -63667081 - AluJo SINE Alu -12 300 1 2222 185 19 31 chr6 125612473 125612603 -63666951 - L1ME1 LINE L1 -387 5779 5649 22 0 0 0 chr6 125612609 125612631 -63666923 + AT_rich Low_complexity Low_complexity 1 22 0 302 324 121 52 chr6 125612811 125613289 -63666265 - L2 LINE L2 -1342 1972 1462 567 122 26 166 chr6 125613948 125614154 -63665400 - L1MA8 LINE L1 -10 6281 6104 836 159 0 8 chr6 125614162 125614294 -63665260 + FLAM_C SINE Alu 3 133 -10 773 221 21 11 chr6 125614320 125614510 -63665044 - L1MA6 LINE L1 -233 6067 5876 413 157 0 12 chr6 125614505 125614588 -63664966 - L1MB4 LINE L1 -34 6146 6065 * 283 267 0 0 chr6 125614683 125614758 -63664796 + (TA)n Simple_repeat Simple_repeat 1 75 0 1672 163 20 34 chr6 125614761 125615056 -63664498 - AluJo SINE Alu -21 291 1 610 289 40 0 chr6 125615139 125615291 -63664263 + L2 LINE L2 3114 3271 -1 28 61 0 0 chr6 125615771 125615820 -63663734 + AT_rich Low_complexity Low_complexity 1 49 0 537 209 17 57 chr6 125617093 125617270 -63662284 - MER104 DNA Tc2 0 180 11 21 0 0 0 chr6 125617457 125617478 -63662076 + AT_rich Low_complexity Low_complexity 1 21 0 585 133 0 0 chr6 125617592 125617682 -63661872 - AluSg/x SINE Alu -8 302 213 1998 122 30 0 chr6 125617934 125618230 -63661324 - AluSx SINE Alu -7 305 1 2410 93 0 0 chr6 125618927 125619237 -63660317 - AluSx SINE Alu 0 312 3 2110 115 0 0 chr6 125719939 125720217 -63559337 + AluY SINE Alu 1 278 -33 2049 122 10 75 chr6 125721160 125721457 -63558097 + MLT1A1 LTR MaLR 7 322 -43 597 250 8 0 chr6 125721457 125721585 -63557969 + FLAM_A SINE Alu 1 129 -4 2440 102 0 6 chr6 125721587 125721901 -63557653 + AluSx SINE Alu 1 312 0 2049 122 10 75 chr6 125721901 125721984 -63557570 + MLT1A1 LTR MaLR 323 365 0 243 341 12 0 chr6 125721984 125722066 -63557488 - MER5A DNA MER1_type -46 143 61 560 188 30 0 chr6 125722079 125722180 -63557374 - U13 snRNA snRNA 0 104 1 2175 89 41 17 chr6 125722209 125722500 -63557054 + AluSx SINE Alu 1 298 -14 186 349 58 12 chr6 125724356 125724442 -63555112 - L2 LINE L2 -575 2739 2650 1214 176 115 25 chr6 125724584 125724665 -63554889 + AluJo SINE Alu 23 95 -217 351 0 0 0 chr6 125724665 125724704 -63554850 + (CA)n Simple_repeat Simple_repeat 2 40 0 1214 176 115 25 chr6 125724704 125724866 -63554688 + AluJo SINE Alu 95 288 -24 2435 79 0 16 chr6 125724878 125725194 -63554360 + AluSq SINE Alu 3 313 0 353 202 0 83 chr6 125725211 125725295 -63554259 - MIR SINE MIR -94 114 38 457 298 25 0 chr6 125725447 125725568 -63553986 + MIR SINE MIR 106 229 -33 2169 132 9 40 chr6 125725579 125725927 -63553627 - MER1B DNA MER1_type 0 337 1 1135 217 14 0 chr6 125726010 125726231 -63553323 - MER58A DNA MER1_type 0 224 1 498 248 9 0 chr6 125726251 125726356 -63553198 + L2 LINE L2 3206 3311 -2 581 281 20 0 chr6 125727055 125727208 -63552346 - MLT1G1 LTR MaLR -2 593 438 948 265 28 28 chr6 125727221 125727542 -63552012 + MLT1G1 LTR MaLR 268 588 -7 961 225 16 0 chr6 125727982 125728164 -63551390 + MER91B DNA MER1_type 1 185 -5 21 0 0 0 chr6 125728426 125728447 -63551107 + AT_rich Low_complexity Low_complexity 1 21 0 1659 183 0 24 chr6 125728447 125728742 -63550812 - AluJo SINE Alu -17 295 8 459 0 0 0 chr6 125729970 125730021 -63549533 + (CA)n Simple_repeat Simple_repeat 2 52 0 208 91 45 0 chr6 125730579 125730623 -63548931 + GA-rich Low_complexity Low_complexity 1 46 0 307 345 136 39 chr6 125730784 125731042 -63548512 + L2 LINE L2 2987 3269 -3 213 283 123 28 chr6 125731241 125731347 -63548207 + L2 LINE L2 1323 1438 -1876 1044 196 0 44 chr6 125731621 125731825 -63547729 + AluJo SINE Alu 86 280 -32 830 176 0 0 chr6 125731858 125731977 -63547577 + FLAM_A SINE Alu 1 119 -14 319 333 49 0 chr6 125732325 125732427 -63547127 - L2 LINE L2 -27 3245 3139 22 0 0 0 chr6 125732831 125732853 -63546701 + AT_rich Low_complexity Low_complexity 1 22 0 2458 91 0 0 chr6 125733721 125734028 -63545526 - AluSc SINE Alu -2 307 1 803 126 28 33 chr6 125734056 125734315 -63545239 + AluJ SINE Alu 6 298 -14 22 35 0 0 chr6 125734809 125734838 -63544716 + AT_rich Low_complexity Low_complexity 1 29 0 2118 101 14 0 chr6 125735030 125735307 -63544247 + AluSg SINE Alu 1 281 -29 189 0 0 0 chr6 125735311 125735332 -63544222 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 290 310 82 49 chr6 125735502 125735686 -63543868 - MIR3 SINE MIR -2 206 17 26 30 0 0 chr6 125736973 125737006 -63542548 + AT_rich Low_complexity Low_complexity 1 33 0 883 197 70 12 chr6 125737845 125738089 -63541465 + L1ME1 LINE L1 5796 6053 -113 612 125 214 9 chr6 125738099 125738211 -63541343 - MER58C DNA MER1_type -3 212 78 439 225 54 0 chr6 125738244 125738355 -63541199 + L1ME1 LINE L1 6046 6162 -4 355 183 33 131 chr6 125739674 125739827 -63539727 + MER46C DNA MER2_type 2 139 -199 1976 170 43 0 chr6 125740843 125741167 -63538387 + MER58B DNA MER1_type 1 338 -3 1626 167 7 7 chr6 125741434 125741716 -63537838 + MLT1B LTR MaLR 1 282 -108 336 143 36 0 chr6 125741824 125741880 -63537674 + Alu SINE Alu 234 291 -11 239 319 14 0 chr6 125742980 125743052 -63536502 - L2 LINE L2 0 3272 3200 282 270 112 0 chr6 125743659 125743748 -63535806 - L2 LINE L2 -31 3241 3143 305 368 44 0 chr6 125744002 125744138 -63535416 - L2 LINE L2 -600 2714 2573 183 42 0 0 chr6 125744434 125744458 -63535096 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1112 152 27 11 chr6 125744550 125744734 -63534820 + MER5A DNA MER1_type 3 189 0 386 202 79 0 chr6 125745164 125745253 -63534301 - MLT1H LTR MaLR 0 549 454 1986 81 103 0 chr6 125745408 125745679 -63533875 + AluSx SINE Alu 1 299 -13 705 239 30 6 chr6 125745706 125745873 -63533681 - MLT1H LTR MaLR -354 195 25 1718 153 32 14 chr6 125745892 125746173 -63533381 + AluJo SINE Alu 1 286 -26 373 151 54 54 chr6 125746341 125746434 -63533120 + MER53 DNA DNA 9 101 -88 * 487 72 60 24 chr6 125746354 125746437 -63533117 - MER53 DNA DNA -11 178 93 400 112 67 22 chr6 125746488 125746577 -63532977 + MER53 DNA DNA 97 189 0 640 252 82 68 chr6 125747063 125747191 -63532363 + MIR SINE MIR 18 152 -110 2318 100 0 0 chr6 125747191 125747492 -63532062 + AluSx SINE Alu 1 301 -11 640 252 82 68 chr6 125747492 125747569 -63531985 + MIR SINE MIR 152 226 -36 1017 74 0 0 chr6 125749182 125749304 -63530250 + AluY SINE Alu 11 132 -179 2422 90 0 0 chr6 125749305 125749604 -63529950 + AluSx SINE Alu 1 299 -13 15338 118 17 18 chr6 125750030 125752374 -63527180 - L1P LINE L1 -3794 2352 11 2276 93 3 0 chr6 125752646 125752937 -63526617 + AluSp SINE Alu 1 292 -21 1749 156 22 59 chr6 125752937 125753258 -63526296 - AluJo SINE Alu -3 309 1 243 265 181 0 chr6 125754238 125754321 -63525233 + MIR3 SINE MIR 87 184 -24 429 240 92 112 chr6 125754631 125754827 -63524727 - MIR SINE MIR -21 241 50 708 140 104 150 chr6 125755490 125755561 -63523993 + MER5A DNA MER1_type 6 79 -110 2403 67 0 0 chr6 125755561 125755845 -63523709 + AluY SINE Alu 1 284 -27 708 140 104 150 chr6 125755845 125755966 -63523588 + MER5A DNA MER1_type 79 189 0 1833 205 41 48 chr6 125756440 125756725 -63522829 + L1ME1 LINE L1 5665 5947 -219 2281 103 0 7 chr6 125756725 125757026 -63522528 + AluSx SINE Alu 1 299 -13 1833 205 41 48 chr6 125757026 125757223 -63522331 + L1ME1 LINE L1 5947 6144 -22 305 215 41 111 chr6 125757097 125757269 -63522285 + L1MA10 LINE L1 6173 6332 -2 * 514 203 39 39 chr6 125757595 125757669 -63521885 + L1ME4a LINE L1 5969 6042 -79 1951 133 23 10 chr6 125757669 125757977 -63521577 - AluJb SINE Alu 0 312 1 514 203 39 39 chr6 125757977 125758055 -63521499 + L1ME4a LINE L1 6041 6121 0 378 229 336 0 chr6 125758207 125758338 -63521216 - MER5A DNA MER1_type -1 188 14 1073 144 108 35 chr6 125758345 125758624 -63520930 + MER33 DNA MER1_type 1 288 -36 291 133 0 157 chr6 125758667 125758750 -63520804 + MER33 DNA MER1_type 294 363 0 286 211 14 14 chr6 125758926 125758997 -63520557 - MIR3 SINE MIR -5 203 133 1811 134 48 4 chr6 125759203 125759492 -63520062 - AluSx SINE Alu 0 301 1 2221 73 0 0 chr6 125759528 125759803 -63519751 + AluY SINE Alu 31 305 -6 22 35 0 0 chr6 125760346 125760375 -63519179 + AT_rich Low_complexity Low_complexity 1 29 0 2111 119 26 0 chr6 125760458 125760761 -63518793 - AluSx SINE Alu -1 311 1 261 0 0 0 chr6 125761281 125761310 -63518244 + (CA)n Simple_repeat Simple_repeat 2 30 0 216 0 0 0 chr6 125761517 125761541 -63518013 + (CA)n Simple_repeat Simple_repeat 2 25 0 1123 235 92 25 chr6 125762363 125762721 -63516833 + L2 LINE L2 1280 1661 -1653 916 267 85 55 chr6 125762723 125763444 -63516110 + L2 LINE L2 2574 3313 0 207 0 0 0 chr6 125763529 125763552 -63516002 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1741 159 36 4 chr6 125763554 125763831 -63515723 - AluSx SINE Alu -26 286 1 4294 134 55 31 chr6 125763933 125763986 -63515568 + Tigger2 DNA MER2_type 1 51 -2667 1847 138 0 26 chr6 125763986 125764290 -63515264 - AluJo SINE Alu -16 296 1 4294 134 55 31 chr6 125764290 125764998 -63514556 + Tigger2 DNA MER2_type 51 780 -1938 967 161 133 116 chr6 125764998 125765283 -63514271 + AluJo SINE Alu 6 295 -17 427 203 0 0 chr6 125765283 125765352 -63514202 + Tigger2 DNA MER2_type 788 856 -1862 * 977 170 0 29 chr6 125765345 125765516 -63514038 + Tigger2 DNA MER2_type 2553 2718 0 947 190 71 41 chr6 125765673 125765942 -63513612 - L1MEc LINE L1 -3135 3080 2804 351 141 56 28 chr6 125765946 125766017 -63513537 + L1M4 LINE L1 2655 2727 -3419 516 256 128 20 chr6 125766023 125766328 -63513226 - L1MEc LINE L1 -5413 983 646 454 275 0 0 chr6 125766380 125766489 -63513065 - MER58 DNA MER1_type -92 123 15 2130 239 56 16 chr6 125766564 125767062 -63512492 - LTR40a LTR ERVL -1 518 1 596 333 96 23 chr6 125767158 125767585 -63511969 - L1MEc LINE L1 -5884 512 55 243 0 0 0 chr6 125767594 125767621 -63511933 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2087 98 7 0 chr6 125767624 125767900 -63511654 - AluSc SINE Alu -31 278 1 501 231 39 0 chr6 125768288 125768392 -63511162 + MER81 DNA DNA 4 111 -3 2229 69 41 3 chr6 125770196 125770486 -63509068 + AluY SINE Alu 1 301 -10 425 298 21 35 chr6 125770624 125770765 -63508789 + MIR3 SINE MIR 3 141 -67 246 247 273 27 chr6 125770867 125771017 -63508537 - MIR SINE MIR -13 249 63 2423 80 3 10 chr6 125771126 125771439 -63508115 + AluY SINE Alu 1 311 0 2183 175 5 23 chr6 125771510 125771665 -63507889 - MLT1B LTR MaLR -8 382 226 1947 193 25 3 chr6 125771665 125772022 -63507532 + MLT1A1 LTR MaLR 1 365 0 2183 175 5 23 chr6 125772022 125772255 -63507299 - MLT1B LTR MaLR -164 226 1 626 251 193 14 chr6 125772302 125772509 -63507045 - MIR SINE MIR -17 245 2 369 111 0 0 chr6 125772670 125772724 -63506830 - MADE1 DNA Mariner -26 54 1 2150 145 0 3 chr6 125774095 125774406 -63505148 + AluSx SINE Alu 1 310 -2 204 288 0 45 chr6 125774555 125774621 -63504933 + MIR SINE MIR 81 143 -119 612 257 115 59 chr6 125776996 125777174 -63502380 - L3 LINE CR1 -1 1576 1409 1749 135 3 92 chr6 125777174 125777499 -63502055 - AluJb SINE Alu -16 296 1 612 257 115 59 chr6 125777499 125777643 -63501911 - L3 LINE CR1 -168 1409 1236 329 295 179 73 chr6 125778109 125778411 -63501143 + L2 LINE L2 2938 3271 -1 216 219 78 16 chr6 125778440 125778504 -63501050 + MIR3 SINE MIR 137 204 -4 329 333 12 16 chr6 125778617 125778792 -63500762 - MIR SINE MIR -3 205 29 2412 87 0 0 chr6 125779495 125779804 -63499750 - AluY SINE Alu -2 309 1 232 313 20 40 chr6 125779955 125780054 -63499500 + MIR SINE MIR 11 107 -155 489 253 40 27 chr6 125780079 125780229 -63499325 + MER5B DNA MER1_type 4 155 -23 306 218 113 60 chr6 125780296 125780351 -63499203 + MIR SINE MIR 106 157 -105 2181 94 3 23 chr6 125780351 125780658 -63498896 + AluY SINE Alu 1 301 -10 306 218 113 60 chr6 125780658 125780735 -63498819 + MIR SINE MIR 157 245 -17 1831 136 70 0 chr6 125780966 125781238 -63498316 - AluJb SINE Alu -21 291 1 306 294 178 20 chr6 125781350 125781496 -63498058 + MIR3 SINE MIR 30 198 -10 476 252 43 51 chr6 125781524 125781758 -63497796 - L2 LINE L2 -396 2918 2687 * 750 251 77 0 chr6 125781728 125781935 -63497619 - MIR SINE MIR -4 258 36 2401 78 7 0 chr6 125783126 125783421 -63496133 + AluSp SINE Alu 1 297 -16 1212 85 13 0 chr6 125783421 125783574 -63495980 + AluSc SINE Alu 132 286 -23 508 207 53 53 chr6 125786292 125786442 -63493112 - L2 LINE L2 0 3313 3164 1659 233 41 18 chr6 125786454 125786841 -63492713 - MLT1I LTR MaLR 0 409 14 900 227 197 30 chr6 125786847 125787445 -63492109 - L2 LINE L2 -170 3143 2446 286 250 12 36 chr6 125788170 125788254 -63491300 - L2 LINE L2 0 3313 3232 240 252 76 17 chr6 125788254 125788373 -63491181 - L1ME4a LINE L1 -10 6111 5986 22 56 0 0 chr6 125788445 125788481 -63491073 + AT_rich Low_complexity Low_complexity 1 36 0 573 230 46 7 chr6 125788696 125788848 -63490706 - L1ME4a LINE L1 0 6121 5964 670 243 20 0 chr6 125788876 125789028 -63490526 + MIR SINE MIR 92 246 -16 261 176 0 0 chr6 125789231 125789282 -63490272 - L1MC4 LINE L1 -5 8037 7987 1623 233 78 7 chr6 125789285 125789731 -63489823 - L1MC4 LINE L1 -140 7902 7425 822 156 22 7 chr6 125790043 125790178 -63489376 + FLAM_C SINE Alu 5 141 -2 1755 163 7 26 chr6 125790182 125790294 -63489260 + AluJb SINE Alu 1 114 -198 2292 119 135 5 chr6 125790294 125790673 -63488881 + MSTA LTR MaLR 1 428 0 1755 163 7 26 chr6 125790673 125790867 -63488687 + AluJb SINE Alu 114 301 -11 2255 109 0 0 chr6 125791667 125791960 -63487594 + AluSq SINE Alu 1 293 -20 27 49 0 0 chr6 125791960 125792001 -63487553 + AT_rich Low_complexity Low_complexity 1 41 0 502 121 21 106 chr6 125792352 125792493 -63487061 - L1MB2 LINE L1 0 6171 6043 423 329 67 9 chr6 125793339 125793549 -63486005 - MIR SINE MIR -10 252 31 202 349 101 60 chr6 125794251 125794400 -63485154 + L2 LINE L2 3104 3258 -14 1991 113 16 39 chr6 125797915 125798224 -63481330 + AluSx SINE Alu 1 302 -10 1695 162 3 57 chr6 125798319 125798453 -63481101 + AluJb SINE Alu 1 141 -171 1938 123 49 11 chr6 125798453 125798737 -63480817 - AluSx SINE Alu -17 295 1 1695 162 3 57 chr6 125798737 125798917 -63480637 + AluJb SINE Alu 141 298 -14 354 308 161 0 chr6 125799258 125799388 -63480166 + MIR3 SINE MIR 29 179 -29 2486 73 0 0 chr6 125800339 125800639 -63478915 + AluY SINE Alu 1 300 -11 336 83 0 0 chr6 125800707 125800755 -63478799 + (TG)n Simple_repeat Simple_repeat 2 49 0 1955 164 7 3 chr6 125801362 125801667 -63477887 + AluJb SINE Alu 1 306 -6 2471 55 0 3 chr6 125801942 125802232 -63477322 - AluY SINE Alu -7 304 16 2259 113 10 0 chr6 125802260 125802561 -63476993 + AluSg SINE Alu 1 304 -6 361 316 34 0 chr6 125802683 125802800 -63476754 - MIR3 SINE MIR -39 169 49 2377 101 0 7 chr6 125802944 125803252 -63476302 - AluSx SINE Alu -6 306 1 729 266 105 20 chr6 125804566 125804979 -63474575 - L2 LINE L2 -97 3216 2764 650 250 33 7 chr6 125805154 125805306 -63474248 + MER97c DNA MER1_type? 1 156 -934 2324 92 3 0 chr6 125805418 125805711 -63473843 + AluSx SINE Alu 1 294 -18 1976 102 0 0 chr6 125805711 125805964 -63473590 + AluSc SINE Alu 33 287 -22 270 325 49 33 chr6 125806008 125806398 -63473156 - L2 LINE L2 -264 3008 2612 2262 119 0 3 chr6 125807082 125807392 -63472162 + AluSx SINE Alu 4 312 0 844 213 0 26 chr6 125807803 125807958 -63471596 - MER63A DNA MER1_type -4 206 56 332 301 117 56 chr6 125807973 125808315 -63471239 - L2 LINE L2 -77 3195 2833 200 122 24 0 chr6 125808676 125808717 -63470837 + (CA)n Simple_repeat Simple_repeat 1 42 0 181 156 89 44 chr6 125809891 125809936 -63469618 - MIR3 SINE MIR -11 197 151 424 291 137 0 chr6 125810348 125810523 -63469031 - MIR SINE MIR -18 244 46 281 305 120 45 chr6 125812706 125812950 -63466604 + L3b LINE CR1 1102 1375 -208 561 68 0 0 chr6 125812950 125813024 -63466530 + (TG)n Simple_repeat Simple_repeat 2 75 0 281 305 120 45 chr6 125813024 125813087 -63466467 + L3b LINE CR1 1375 1432 -151 436 136 15 0 chr6 125813154 125813220 -63466334 + AluS SINE Alu 2 68 -245 673 281 88 4 chr6 125813749 125813987 -63465567 + MIR SINE MIR 2 259 -3 2236 103 0 19 chr6 125813987 125814297 -63465257 + AluSx SINE Alu 1 304 -8 650 258 41 33 chr6 125814403 125814453 -63465101 + LTR33 LTR ERVL 246 294 -227 1946 137 90 22 chr6 125814453 125814818 -63464736 + MLT1B LTR MaLR 1 390 0 650 258 41 33 chr6 125814818 125815011 -63464543 + LTR33 LTR ERVL 294 491 -30 780 158 0 0 chr6 125815254 125815381 -63464173 - FLAM_A SINE Alu -5 128 2 1812 150 13 23 chr6 125815416 125815587 -63463967 - AluSx SINE Alu -9 303 135 2301 110 0 7 chr6 125815587 125815895 -63463659 - AluSx SINE Alu -6 306 1 1812 150 13 23 chr6 125815895 125816029 -63463525 - AluSx SINE Alu -177 135 1 1897 119 63 28 chr6 125816162 125816448 -63463106 + AluSg SINE Alu 1 296 -14 1903 164 0 10 chr6 125819457 125819756 -63459798 + AluJb SINE Alu 1 296 -16 2525 70 0 0 chr6 125819824 125820126 -63459428 + AluY SINE Alu 1 302 -9 240 277 0 0 chr6 125821275 125821340 -63458214 + L1MC4 LINE L1 7918 7982 -60 22 0 0 0 chr6 125821374 125821396 -63458158 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr6 125821571 125821622 -63457932 + AT_rich Low_complexity Low_complexity 1 51 0 195 100 0 0 chr6 125821653 125821683 -63457871 + (T)n Simple_repeat Simple_repeat 1 30 0 1678 141 118 7 chr6 125821920 125822190 -63457364 - AluJb SINE Alu -12 300 1 2099 141 0 3 chr6 125822225 125822530 -63457024 - AluJb SINE Alu -8 304 1 393 104 15 0 chr6 125822627 125822694 -63456860 + L1MD3 LINE L1 7928 7995 0 1809 171 0 7 chr6 125822876 125823180 -63456374 + AluJb SINE Alu 1 302 -10 2184 99 41 0 chr6 125823566 125823858 -63455696 + AluSg SINE Alu 1 304 -6 1983 152 3 0 chr6 125823968 125824264 -63455290 + AluJb SINE Alu 1 297 -15 2267 114 0 0 chr6 125826213 125826512 -63453042 + AluSx SINE Alu 1 299 -13 591 320 175 16 chr6 125827307 125827741 -63451813 + L2 LINE L2 2810 3312 -1 3745 113 29 0 chr6 125827835 125828347 -63451207 + MER1A DNA MER1_type 1 527 0 848 103 0 8 chr6 125829049 125829166 -63450388 + AluJb SINE Alu 18 133 -179 290 208 0 0 chr6 125829309 125829362 -63450192 - MIR SINE MIR 0 262 210 229 283 140 22 chr6 125829457 125829758 -63449796 + L2 LINE L2 2836 3220 -93 247 65 87 0 chr6 125829951 125829997 -63449557 - L2 LINE L2 -1 3312 3263 358 190 10 60 chr6 125831417 125831517 -63448037 - MIR SINE MIR 0 262 168 2035 114 7 3 chr6 125831774 125832072 -63447482 - AluSx SINE Alu -13 299 1 754 302 80 31 chr6 125832305 125832776 -63446778 - L1ME LINE L1 -308 5813 5317 393 302 60 26 chr6 125833200 125833584 -63445970 + L1ME4a LINE L1 5651 6118 -3 1806 102 48 34 chr6 125833589 125833883 -63445671 - AluSx SINE Alu -12 300 3 265 234 0 31 chr6 125834687 125834751 -63444803 - L2 LINE L2 -6 3307 3246 446 220 3 51 chr6 125834940 125835079 -63444475 + L1MB7 LINE L1 6052 6183 -1 195 42 0 0 chr6 125835338 125835362 -63444192 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 340 279 115 10 chr6 125835463 125835567 -63443987 - L3b LINE CR1 -37 1546 1432 386 244 102 57 chr6 125836960 125837206 -63442348 + L1MC4a LINE L1 5820 6076 -1732 211 271 0 0 chr6 125838173 125838221 -63441333 + CT-rich Low_complexity Low_complexity 3 50 0 2197 97 0 3 chr6 125838366 125838664 -63440890 + AluSx SINE Alu 1 297 -15 1765 139 7 10 chr6 125839150 125839445 -63440109 + AluJb SINE Alu 1 294 -18 2010 139 0 3 chr6 125839467 125839769 -63439785 + AluSq SINE Alu 1 301 -12 2336 71 0 0 chr6 125840066 125840362 -63439192 + AluSg SINE Alu 2 297 -13 1245 230 21 97 chr6 125840490 125840804 -63438750 + L2 LINE L2 2925 3201 -112 1611 160 6 47 chr6 125840804 125840973 -63438581 - AluJo SINE Alu -7 305 154 2278 85 0 0 chr6 125840973 125841266 -63438288 - AluSx SINE Alu -14 298 6 1611 160 6 47 chr6 125841266 125841414 -63438140 - AluJo SINE Alu -158 154 1 1245 230 21 97 chr6 125841414 125841520 -63438034 + L2 LINE L2 3201 3313 0 234 240 20 20 chr6 125841698 125841748 -63437806 - L2 LINE L2 -16 3256 3207 1051 254 118 58 chr6 125842738 125843288 -63436266 + L1MC4a LINE L1 2368 5926 0 206 229 21 0 chr6 125843298 125843346 -63436208 - MER5B DNA MER1_type -129 49 1 1151 173 0 36 chr6 125843505 125843725 -63435829 - AluJo SINE Alu -100 212 1 851 265 20 43 chr6 125844433 125844686 -63434868 + MIR SINE MIR 13 259 -3 245 321 87 76 chr6 125844820 125845004 -63434550 - MIR SINE MIR -14 248 63 965 172 19 51 chr6 125845052 125845267 -63434287 - MER58C DNA MER1_type 0 215 8 1075 283 0 4 chr6 125845348 125845599 -63433955 - MIR SINE MIR 0 262 13 197 146 21 0 chr6 125846821 125846869 -63432685 + T-rich Low_complexity Low_complexity 2 50 0 301 278 33 0 chr6 125846939 125847029 -63432525 + GA-rich Low_complexity Low_complexity 4 96 0 252 0 0 0 chr6 125847602 125847630 -63431924 + (CA)n Simple_repeat Simple_repeat 1 28 0 271 244 130 43 chr6 125849450 125849565 -63429989 - MIR3 SINE MIR -43 165 41 2329 29 10 26 chr6 125850792 125851100 -63428454 + AluY SINE Alu 2 304 -7 234 150 0 0 chr6 125851253 125851293 -63428261 + (CA)n Simple_repeat Simple_repeat 2 41 0 214 279 81 29 chr6 125851470 125851606 -63427948 + MIR3 SINE MIR 8 150 -58 1535 143 4 0 chr6 125851954 125852198 -63427356 - AluJo SINE Alu -20 292 48 7790 69 16 5 chr6 125852198 125853192 -63426362 + LTR13 LTR ERVK 3 1007 0 290 218 0 0 chr6 125853192 125853247 -63426307 - AluJo SINE Alu -245 55 1 213 233 11 89 chr6 125853258 125853348 -63426206 + L2 LINE L2 3184 3266 -6 1626 115 0 8 chr6 125853973 125854229 -63425325 - AluSx SINE Alu 0 302 49 500 301 50 6 chr6 125854505 125854684 -63424870 - MIR SINE MIR -73 189 4 2461 197 83 14 chr6 125854994 125855512 -63424042 - MLT2B3 LTR ERVL 0 554 1 2057 174 11 11 chr6 125855517 125855879 -63423675 - MLT1A1 LTR MaLR 0 365 4 2323 107 48 22 chr6 125855887 125856242 -63423312 - THE1B LTR MaLR 0 364 1 2224 78 0 0 chr6 125856251 125856582 -63422972 - AluY SINE Alu 0 331 1 1958 163 61 3 chr6 125856948 125857292 -63422262 + MLT1A1 LTR MaLR 2 365 0 193 261 22 0 chr6 125857399 125857445 -63422109 - L2 LINE L2 -25 3247 3201 1923 109 39 0 chr6 125857871 125858154 -63421400 - AluSx SINE Alu -18 294 1 350 236 135 0 chr6 125858456 125858545 -63421009 - MIR SINE MIR -10 252 152 4005 135 32 24 chr6 125859019 125859737 -63419817 + L1MB3 LINE L1 5459 6182 -1 368 255 69 29 chr6 125859740 125859842 -63419712 - MIR SINE MIR -80 182 77 523 294 25 6 chr6 125860800 125860960 -63418594 + MIR SINE MIR 8 170 -92 293 341 87 12 chr6 125860979 125861152 -63418402 - MER91A DNA MER1_type -7 189 4 2145 105 23 0 chr6 125861349 125861653 -63417901 + AluSx SINE Alu 1 311 -1 21 57 0 0 chr6 125861956 125861991 -63417563 + AT_rich Low_complexity Low_complexity 1 35 0 1725 156 32 0 chr6 125862105 125862388 -63417166 + AluJb SINE Alu 1 292 -20 1979 136 0 0 chr6 125862390 125862705 -63416849 + AluJb SINE Alu 1 315 0 288 0 0 0 chr6 125862722 125862754 -63416800 + (TG)n Simple_repeat Simple_repeat 2 33 0 1115 266 53 10 chr6 125862966 125863267 -63416287 + MLT1J LTR MaLR 1 314 -197 564 184 10 0 chr6 125863267 125863370 -63416184 - L1M3 LINE L1 -367 5804 5701 232 111 83 0 chr6 125863379 125863415 -63416139 + MLT1J LTR MaLR 329 367 -144 360 43 0 0 chr6 125863905 125863951 -63415603 + (CA)n Simple_repeat Simple_repeat 1 46 0 1257 92 0 0 chr6 125864044 125864208 -63415346 - AluSg/x SINE Alu -16 296 133 2102 117 3 7 chr6 125864309 125864618 -63414936 - AluSx SINE Alu -2 310 3 430 202 32 0 chr6 125864870 125864964 -63414590 - MIR SINE MIR -146 116 20 789 220 93 0 chr6 125865579 125865761 -63413793 - MER63A DNA MER1_type -11 199 1 222 276 10 6 chr6 125865829 125865948 -63413606 + MER5B DNA MER1_type 1 178 0 2009 133 3 3 chr6 125865982 125866291 -63413263 + AluSx SINE Alu 1 309 -3 530 227 177 0 chr6 125866291 125866432 -63413122 - MER5A DNA MER1_type -15 174 9 2011 109 7 0 chr6 125866530 125866815 -63412739 - AluSx SINE Alu -25 287 1 853 171 0 0 chr6 125867503 125867632 -63411922 - FLAM_C SINE Alu -3 130 2 1058 68 0 0 chr6 125868471 125868603 -63410951 + AluSq/x SINE Alu 1 132 -181 3386 156 30 3 chr6 125869004 125869600 -63409954 + L1MB4 LINE L1 5569 6180 0 213 273 30 30 chr6 125870435 125870501 -63409053 + (CACCC)n Simple_repeat Simple_repeat 4 69 0 1972 139 3 0 chr6 125871641 125871935 -63407619 + AluSx SINE Alu 5 299 -13 2216 93 0 0 chr6 125872048 125872337 -63407217 + AluSx SINE Alu 1 289 -23 296 337 41 0 chr6 125872496 125872594 -63406960 + HAL1 LINE L1 10 111 -2396 261 297 11 33 chr6 125872635 125872726 -63406828 + HAL1 LINE L1 2410 2498 -9 297 356 79 34 chr6 125872727 125872904 -63406650 - L3b LINE CR1 -9 1574 1390 1674 200 139 88 chr6 125873417 125874153 -63405401 - LTR41 LTR ERVL 0 773 1 870 281 140 32 chr6 125874408 125874814 -63404740 + MLT1J2 LTR MaLR 1 450 0 38 51 0 0 chr6 125875318 125875377 -63404177 + AT_rich Low_complexity Low_complexity 1 59 0 195 42 0 0 chr6 125876126 125876150 -63403404 + (GA)n Simple_repeat Simple_repeat 1 24 0 552 306 27 7 chr6 125876888 125877035 -63402519 + MIR SINE MIR 2 151 -111 191 254 17 34 chr6 125877264 125877323 -63402231 + MIR SINE MIR 17 74 -134 415 227 87 60 chr6 125877456 125877606 -63401948 - MIR SINE MIR -7 255 102 268 263 189 0 chr6 125877613 125877708 -63401846 - MIR SINE MIR -56 206 94 2223 99 0 3 chr6 125877827 125878129 -63401425 - AluSg SINE Alu -9 301 1 3210 220 47 31 chr6 125878134 125878917 -63400637 - L1ME3 LINE L1 -35 6127 5322 2289 80 0 3 chr6 125878917 125879218 -63400336 - AluY SINE Alu -11 300 1 3210 220 47 31 chr6 125879218 125879371 -63400183 - L1ME3 LINE L1 -840 5322 5173 13996 42 1 3 chr6 125879384 125881860 -63397694 - L1PA5 LINE L1 0 6154 3690 7761 43 0 1 chr6 125881861 125882820 -63396734 + L1PA5 LINE L1 2733 3690 -2456 1734 242 84 21 chr6 125882834 125883210 -63396344 - L1ME3 LINE L1 -984 5162 4730 2249 101 0 10 chr6 125883210 125883507 -63396047 - AluSx SINE Alu -18 294 1 1734 242 84 21 chr6 125883507 125883749 -63395805 - L1ME3 LINE L1 -1416 4730 4505 3126 117 56 35 chr6 125883798 125884313 -63395241 + L1MB8 LINE L1 5591 6121 -57 2444 89 0 0 chr6 125884313 125884617 -63394937 + AluY SINE Alu 1 304 -7 3126 117 56 35 chr6 125884617 125884676 -63394878 + L1MB8 LINE L1 6121 6177 -1 2210 104 19 104 chr6 125884709 125885133 -63394421 + MLT1B LTR MaLR 3 390 0 2544 87 0 0 chr6 125885252 125885562 -63393992 - AluSp SINE Alu -3 310 1 2114 115 0 45 chr6 125886213 125886354 -63393200 + AluSx SINE Alu 6 152 -160 2580 44 0 0 chr6 125886354 125886650 -63392904 + AluY SINE Alu 1 296 -15 2114 115 0 45 chr6 125886650 125886822 -63392732 + AluSx SINE Alu 152 305 -7 236 231 16 132 chr6 125887353 125887474 -63392080 + MLT1E2 LTR MaLR 492 598 -28 265 226 32 0 chr6 125887531 125887593 -63391961 + MER5A DNA MER1_type 10 73 -116 29 0 0 0 chr6 125887654 125887683 -63391871 + AT_rich Low_complexity Low_complexity 1 29 0 530 264 150 32 chr6 125887686 125888039 -63391515 + L1ME3 LINE L1 5625 6016 -105 1736 128 57 39 chr6 125888179 125888461 -63391093 + AluJo SINE Alu 11 297 -15 2081 119 0 0 chr6 125888710 125888988 -63390566 + AluY SINE Alu 1 278 -33 2169 124 11 61 chr6 125889931 125890228 -63389326 + MLT1A1 LTR MaLR 7 317 -48 581 242 8 0 chr6 125890228 125890356 -63389198 + FLAM_A SINE Alu 1 129 -4 2386 108 0 6 chr6 125890358 125890672 -63388882 + AluSx SINE Alu 1 312 0 2169 124 11 61 chr6 125890672 125890749 -63388805 + MLT1A1 LTR MaLR 318 365 0 211 341 12 0 chr6 125890749 125890831 -63388723 - MER5A DNA MER1_type -46 143 61 558 188 30 0 chr6 125890844 125890945 -63388609 - U13 snRNA snRNA 0 104 1 2164 92 41 17 chr6 125890974 125891267 -63388287 + AluSx SINE Alu 1 300 -12 1189 176 115 25 chr6 125893354 125893435 -63386119 + AluJo SINE Alu 23 95 -217 369 0 0 0 chr6 125893435 125893476 -63386078 + (CA)n Simple_repeat Simple_repeat 2 42 0 1189 176 115 25 chr6 125893476 125893638 -63385916 + AluJo SINE Alu 95 288 -24 2392 80 0 16 chr6 125893650 125893963 -63385591 + AluSq SINE Alu 3 310 -3 320 204 8 57 chr6 125893979 125894061 -63385493 - MIR SINE MIR -94 114 32 407 298 25 0 chr6 125894215 125894336 -63385218 + MIR SINE MIR 106 229 -33 2116 129 9 40 chr6 125894347 125894695 -63384859 - MER1B DNA MER1_type 0 337 1 1111 217 14 0 chr6 125894778 125894999 -63384555 - MER58A DNA MER1_type 0 224 1 475 229 9 0 chr6 125895019 125895124 -63384430 + L2 LINE L2 3206 3311 -2 625 279 32 0 chr6 125895823 125895981 -63383573 - MLT1G1 LTR MaLR -2 593 431 1002 266 37 28 chr6 125895983 125896310 -63383244 + MLT1G1 LTR MaLR 259 588 -7 874 231 16 0 chr6 125896750 125896932 -63382622 + MER91B DNA MER1_type 1 185 -5 22 0 0 0 chr6 125897193 125897215 -63382339 + AT_rich Low_complexity Low_complexity 1 22 0 1634 180 0 24 chr6 125897215 125897509 -63382045 - AluJo SINE Alu -18 294 8 297 0 0 0 chr6 125898737 125898770 -63380784 + (CA)n Simple_repeat Simple_repeat 2 34 0 208 91 45 0 chr6 125899334 125899378 -63380176 + GA-rich Low_complexity Low_complexity 1 46 0 208 296 42 14 chr6 125899543 125899614 -63379940 + L2 LINE L2 2987 3059 -213 181 293 123 28 chr6 125900005 125900111 -63379443 + L2 LINE L2 1323 1438 -1876 1040 194 0 53 chr6 125900385 125900591 -63378963 + AluJo SINE Alu 86 280 -32 777 176 0 0 chr6 125900624 125900743 -63378811 + FLAM_A SINE Alu 1 119 -14 275 343 49 0 chr6 125901091 125901193 -63378361 - L2 LINE L2 -27 3245 3139 22 0 0 0 chr6 125901597 125901619 -63377935 + AT_rich Low_complexity Low_complexity 1 22 0 2474 91 0 0 chr6 125902487 125902794 -63376760 - AluSc SINE Alu -2 307 1 760 129 8 34 chr6 125902822 125903081 -63376473 + AluJ SINE Alu 6 298 -14 22 35 0 0 chr6 125903575 125903604 -63375950 + AT_rich Low_complexity Low_complexity 1 29 0 2149 101 14 0 chr6 125903796 125904098 -63375456 + AluSg SINE Alu 1 306 0 240 310 82 49 chr6 125904268 125904452 -63375102 - MIR3 SINE MIR -2 206 17 26 30 0 0 chr6 125905739 125905772 -63373782 + AT_rich Low_complexity Low_complexity 1 33 0 900 193 70 12 chr6 125906611 125906855 -63372699 + L1ME1 LINE L1 5796 6053 -113 608 125 214 9 chr6 125906865 125906977 -63372577 - MER58C DNA MER1_type -3 212 78 429 225 54 0 chr6 125907010 125907121 -63372433 + L1ME1 LINE L1 6046 6162 -4 354 183 33 131 chr6 125908440 125908593 -63370961 + MER46C DNA MER2_type 2 139 -199 224 280 27 0 chr6 125909209 125909284 -63370270 + CT-rich Low_complexity Low_complexity 3 79 0 931 191 157 0 chr6 125909604 125909808 -63369746 - MER46A DNA MER2_type 0 236 1 25 0 0 0 chr6 125909855 125909880 -63369674 + AT_rich Low_complexity Low_complexity 1 25 0 2176 141 0 3 chr6 125910128 125910440 -63369114 - AluSx SINE Alu -1 311 1 1212 62 0 0 chr6 125910513 125910657 -63368897 - AluSg/x SINE Alu -6 306 163 1633 166 0 0 chr6 125911098 125911345 -63368209 + AluJb SINE Alu 31 277 -35 1770 150 0 59 chr6 125911766 125912072 -63367482 - AluJo SINE Alu -24 288 1 2353 99 0 13 chr6 125913670 125913982 -63365572 + AluSx SINE Alu 1 308 -4 237 324 156 29 chr6 125914277 125914515 -63365039 - L2 LINE L2 0 3272 3005 953 221 184 18 chr6 125914618 125915123 -63364431 + L2 LINE L2 2714 3307 -6 276 248 26 43 chr6 125915987 125916104 -63363450 + HAL1b LINE L1 531 645 -703 186 43 0 0 chr6 125918140 125918163 -63361391 + (T)n Simple_repeat Simple_repeat 1 23 0 185 213 147 27 chr6 125918753 125918828 -63360726 - L2 LINE L2 -643 2671 2588 2167 112 3 0 chr6 125920029 125920375 -63359179 + AluSx SINE Alu 1 347 0 200 308 77 0 chr6 125922066 125922131 -63357423 + MER91 DNA MER1_type 71 140 0 410 0 20 0 chr6 125922626 125922676 -63356878 + (TG)n Simple_repeat Simple_repeat 2 52 0 331 297 88 42 chr6 125923026 125923381 -63356173 + L2 LINE L2 2184 3266 -6 228 344 92 20 chr6 125923571 125923821 -63355733 + L2 LINE L2 2824 3091 -181 289 308 84 21 chr6 125923912 125924055 -63355499 + L2 LINE L2 3121 3272 0 363 304 93 21 chr6 125924723 125924917 -63354637 - L2 LINE L2 -1 3312 3105 239 288 169 17 chr6 125924896 125925014 -63354540 - L2 LINE L2 -457 2857 2722 * 1113 157 18 103 chr6 125925466 125925550 -63354004 - AluJo SINE Alu -108 204 114 2168 117 7 0 chr6 125925550 125925840 -63353714 - AluSx SINE Alu -15 297 6 1113 157 18 103 chr6 125925840 125925978 -63353576 - AluJo SINE Alu -198 114 1 217 268 85 0 chr6 125926261 125926343 -63353211 - L2 LINE L2 -15 3257 3169 * 313 266 110 26 chr6 125926312 125926466 -63353088 - MIR SINE MIR -95 167 1 468 248 113 0 chr6 125927287 125927428 -63352126 + MIR SINE MIR 106 262 0 215 61 30 0 chr6 125929535 125929568 -63349986 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 309 68 0 0 chr6 125932115 125932159 -63347395 + (TG)n Simple_repeat Simple_repeat 2 45 0 622 279 6 6 chr6 125932308 125932469 -63347085 - MIR SINE MIR -87 175 15 186 103 0 0 chr6 125932559 125932588 -63346966 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 317 286 131 30 chr6 125932649 125932817 -63346737 - MIR SINE MIR -65 197 13 571 258 15 2 chr6 125933634 125933826 -63345728 - MIR SINE MIR -65 143 3 1793 240 89 9 chr6 125933913 125934455 -63345099 + L1ME3 LINE L1 5578 6162 0 268 320 52 33 chr6 125934911 125935064 -63344490 + L2 LINE L2 2328 2483 -831 628 302 53 9 chr6 125935156 125935381 -63344173 - MIR SINE MIR 0 262 28 431 164 69 43 chr6 125936342 125936458 -63343096 + MIR SINE MIR 2 120 -142 234 192 0 0 chr6 125937729 125937781 -63341773 + GA-rich Low_complexity Low_complexity 6 57 0 292 204 182 0 chr6 125938222 125938310 -63341244 + LTR33 LTR ERVL 33 136 -385 263 301 90 30 chr6 125938406 125938539 -63341015 + LTR33 LTR ERVL 303 443 -78 872 212 5 16 chr6 125939601 125939790 -63339764 + MER5A DNA MER1_type 2 188 -1 23 33 0 0 chr6 125941200 125941230 -63338324 + AT_rich Low_complexity Low_complexity 1 30 0 339 257 0 0 chr6 125941738 125941812 -63337742 + MIR3 SINE MIR 119 192 -16 23 33 0 0 chr6 125941939 125941969 -63337585 + AT_rich Low_complexity Low_complexity 1 30 0 215 226 16 16 chr6 125942581 125942643 -63336911 - MIR SINE MIR -11 251 190 2375 78 3 26 chr6 125942643 125942950 -63336604 - AluSp SINE Alu -13 300 1 475 255 125 48 chr6 125943233 125943320 -63336234 - MIR SINE MIR -14 248 169 2271 102 0 0 chr6 125943320 125943613 -63335941 + AluSc SINE Alu 1 293 -16 475 255 125 48 chr6 125943613 125943742 -63335812 - MIR SINE MIR -93 169 19 225 0 0 0 chr6 125944431 125944456 -63335098 + (T)n Simple_repeat Simple_repeat 1 25 0 214 70 0 47 chr6 125945668 125945711 -63333843 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 2032 119 0 0 chr6 125948991 125949260 -63330294 + AluSx SINE Alu 3 271 -41 212 0 36 0 chr6 125949270 125949298 -63330256 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 2185 133 0 0 chr6 125949299 125949607 -63329947 + AluY SINE Alu 2 309 -2 1623 129 84 28 chr6 125949893 125950084 -63329470 - AluJb SINE Alu -2 310 96 1906 136 11 0 chr6 125950084 125950363 -63329191 + AluSx SINE Alu 1 282 -30 1623 129 84 28 chr6 125950363 125950458 -63329096 - AluJb SINE Alu -216 96 8 31 44 0 0 chr6 125951192 125951237 -63328317 + AT_rich Low_complexity Low_complexity 1 45 0 861 224 208 29 chr6 125951991 125952303 -63327251 - MER113 DNA MER1_type? -113 408 41 340 278 91 21 chr6 125957067 125957254 -63322300 + MIR SINE MIR 63 262 0 621 185 64 70 chr6 125957275 125957374 -63322180 + L1ME3A LINE L1 6015 6114 -56 701 91 9 27 chr6 125957374 125957484 -63322070 - L1MB3 LINE L1 -2 6181 6074 621 185 64 70 chr6 125957484 125957541 -63322013 + L1ME3A LINE L1 6114 6170 0 845 130 0 36 chr6 125959760 125959898 -63319656 - FLAM_C SINE Alu 0 133 1 1004 236 141 39 chr6 125959902 125960366 -63319188 + MLT1F1 LTR MaLR 7 493 -50 22 0 0 0 chr6 125961210 125961232 -63318322 + AT_rich Low_complexity Low_complexity 1 22 0 2444 77 7 3 chr6 125961301 125961601 -63317953 - AluSq SINE Alu -12 301 1 406 137 0 14 chr6 125961819 125961892 -63317662 + MLT1F1 LTR MaLR 520 591 -2 2351 89 0 7 chr6 125961979 125962281 -63317273 - AluSq SINE Alu -13 300 1 272 282 70 64 chr6 125963888 125964044 -63315510 - MER5B DNA MER1_type -21 157 1 262 322 25 0 chr6 125965374 125965495 -63314059 + L2 LINE L2 2369 2492 -822 343 250 10 39 chr6 125965780 125965884 -63313670 + L2 LINE L2 3173 3273 -40 1934 85 100 4 chr6 125965962 125966222 -63313332 - AluSx SINE Alu -27 285 1 1219 171 0 40 chr6 125967134 125967362 -63312192 + MER20 DNA MER1_type 1 219 0 530 214 9 0 chr6 125967782 125967894 -63311660 + L2 LINE L2 3201 3313 0 1031 238 159 45 chr6 125970282 125970812 -63308742 + MLT1E1 LTR MaLR 1 654 0 404 278 118 14 chr6 125970927 125971071 -63308483 - MIR SINE MIR -70 192 34 2185 124 26 40 chr6 125971225 125971605 -63307949 + THE1C LTR MaLR 1 375 0 2960 159 25 6 chr6 125972843 125973370 -63306184 - L1MB7 LINE L1 0 6184 5648 381 284 82 72 chr6 125973445 125973709 -63305845 + L1ME4a LINE L1 5350 5623 -498 2105 125 7 3 chr6 125973709 125974005 -63305549 + AluSx SINE Alu 1 297 -15 381 284 82 72 chr6 125974005 125974254 -63305300 + L1ME4a LINE L1 5623 5868 -253 248 296 89 15 chr6 125974306 125974441 -63305113 + L1ME4a LINE L1 5975 6119 -2 680 290 93 35 chr6 125977056 125977487 -63302067 + MLT1J LTR MaLR 15 470 -41 333 267 137 0 chr6 125977704 125977886 -63301668 - MIR SINE MIR 0 262 45 1904 150 4 0 chr6 125978323 125978642 -63300912 + AluJb SINE Alu 1 320 0 407 287 223 19 chr6 125979348 125979662 -63299892 - L2 LINE L2 -5 3267 2890 279 257 57 19 chr6 125979691 125979796 -63299758 - L2 LINE L2 -17 3296 3188 190 265 204 20 chr6 125979871 125980018 -63299536 - MIR SINE MIR -12 250 77 3717 178 43 14 chr6 125981659 125982398 -63297156 - MER21B LTR ERV1 -53 810 2 238 239 28 22 chr6 125982690 125982782 -63296772 + L1ME LINE L1 5574 5666 -504 1852 141 4 0 chr6 125984340 125984610 -63294944 - AluSg SINE Alu -11 299 29 420 313 120 4 chr6 125984719 125984994 -63294560 + L1ME4a LINE L1 5592 5898 -223 1007 299 78 25 chr6 125985008 125985380 -63294174 + L2 LINE L2 2629 3072 -241 1475 157 50 19 chr6 125985380 125985641 -63293913 + AluJb SINE Alu 37 305 -7 1007 299 78 25 chr6 125985641 125985877 -63293677 + L2 LINE L2 3072 3294 -19 298 299 26 0 chr6 125986150 125986227 -63293327 - L3b LINE CR1 -2 1581 1503 675 239 21 27 chr6 125986264 125986452 -63293102 - MER5A DNA MER1_type -1 188 2 339 314 16 8 chr6 125986683 125986804 -63292750 - MIR SINE MIR -119 143 22 2376 91 0 0 chr6 125987485 125987782 -63291772 - AluSg SINE Alu -13 297 1 299 368 0 48 chr6 125989130 125989296 -63290258 + MIR SINE MIR 59 216 -46 189 107 0 0 chr6 125989622 125989650 -63289904 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 195 184 0 0 chr6 125989650 125989688 -63289866 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 1520 197 46 33 chr6 125990683 125991114 -63288440 - L1ME2 LINE L1 0 6164 5773 329 204 0 11 chr6 125991324 125991412 -63288142 + GA-rich Low_complexity Low_complexity 2 88 0 232 304 191 0 chr6 125992335 125992450 -63287104 - MIR SINE MIR -10 252 116 905 151 61 49 chr6 125993153 125993398 -63286156 + MER33 DNA MER1_type 55 302 -22 217 264 146 9 chr6 125993559 125993669 -63285885 + MIR3 SINE MIR 67 191 -17 22 35 0 0 chr6 125994291 125994320 -63285234 + AT_rich Low_complexity Low_complexity 1 29 0 2638 131 41 5 chr6 125994657 125995069 -63284485 + MSTA LTR MaLR 2 428 0 217 222 0 22 chr6 125995145 125995190 -63284364 + CT-rich Low_complexity Low_complexity 5 48 0 21 0 0 0 chr6 125995233 125995254 -63284300 + AT_rich Low_complexity Low_complexity 1 21 0 1786 172 14 3 chr6 125996138 125996435 -63283119 - AluJo SINE Alu -12 300 1 25 65 0 0 chr6 125996526 125996572 -63282982 + AT_rich Low_complexity Low_complexity 1 46 0 197 139 23 0 chr6 125996748 125996791 -63282763 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 1010 328 88 17 chr6 125997788 125998324 -63281230 + L3 LINE CR1 435 1008 -569 201 171 0 0 chr6 125999632 125999667 -63279887 + MIR3 SINE MIR 148 182 -26 2158 269 90 62 chr6 125999903 126001718 -63277836 + L1ME4a LINE L1 2482 4347 -1799 432 259 109 65 chr6 126002624 126002945 -63276609 + L1ME4a LINE L1 5729 6063 -58 210 220 0 0 chr6 126004177 126004227 -63275327 - L2 LINE L2 -3 3269 3220 192 323 15 0 chr6 126005773 126005838 -63273716 - MIR SINE MIR -150 112 47 2552 117 11 8 chr6 126006840 126007217 -63272337 + MER4D LTR ERV1 1 378 -494 1065 102 48 54 chr6 126007218 126007404 -63272150 + MER30B DNA MER1_type 1 185 -5 2636 125 34 65 chr6 126007408 126007912 -63271642 + MER4D LTR ERV1 385 872 0 390 258 172 5 chr6 126008258 126008467 -63271087 + MIR SINE MIR 3 246 -16 347 178 54 62 chr6 126008560 126008689 -63270865 + L1MC5 LINE L1 7802 7929 -32 351 113 0 0 chr6 126008732 126008785 -63270769 + (A)n Simple_repeat Simple_repeat 1 53 0 1294 190 65 30 chr6 126009720 126010057 -63269497 + MLT1B LTR MaLR 1 349 -41 21 0 0 0 chr6 126010285 126010306 -63269248 + AT_rich Low_complexity Low_complexity 1 21 0 198 282 47 47 chr6 126010448 126010597 -63268957 - L2 LINE L2 -470 2844 2696 315 296 204 5 chr6 126010623 126010809 -63268745 - MIR SINE MIR -19 243 21 2778 101 0 8 chr6 126011025 126011401 -63268153 - THE1C LTR MaLR 0 375 3 2240 101 3 7 chr6 126011918 126012215 -63267339 - AluSc SINE Alu -13 296 1 199 370 137 0 chr6 126012696 126012842 -63266712 + L2 LINE L2 3107 3272 0 250 132 0 0 chr6 126012970 126013008 -63266546 - L1ME1 LINE L1 -6 6160 6123 273 322 25 25 chr6 126013060 126013178 -63266376 - MER5B DNA MER1_type -60 118 1 1040 215 101 13 chr6 126014606 126014904 -63264650 + MER33 DNA MER1_type 1 324 0 1317 160 242 38 chr6 126015096 126015464 -63264090 - MSTB2 LTR MaLR 0 457 15 228 276 0 0 chr6 126016233 126016291 -63263263 + Charlie8 DNA MER1_type 73 130 -2287 221 158 0 0 chr6 126016559 126016597 -63262957 + MIR SINE MIR 82 119 -89 557 281 75 52 chr6 126016825 126017746 -63261808 + L1MC4 LINE L1 7065 8037 -5 215 170 21 0 chr6 126017800 126017847 -63261707 + GA-rich Low_complexity Low_complexity 1 48 0 326 319 15 7 chr6 126018028 126018163 -63261391 + C-rich Low_complexity Low_complexity 5 140 0 236 348 0 27 chr6 126018295 126018473 -63261081 + C-rich Low_complexity Low_complexity 1 173 0 224 182 45 0 chr6 126018590 126018634 -63260920 + GA-rich Low_complexity Low_complexity 5 50 0 359 205 19 124 chr6 126019450 126019611 -63259943 - MER20B DNA MER1_type -606 177 34 2165 122 0 0 chr6 126019745 126020032 -63259522 - AluSx SINE Alu -25 287 1 313 312 43 28 chr6 126020673 126020814 -63258740 - MER5A DNA MER1_type 0 189 47 901 191 4 95 chr6 126022437 126022678 -63256876 - MER20 DNA MER1_type 0 219 1 313 225 63 45 chr6 126023368 126023479 -63256075 - L2 LINE L2 -8 3305 3193 614 162 0 0 chr6 126023512 126023681 -63255873 - AluSg/x SINE Alu 0 370 202 969 112 0 0 chr6 126023682 126023807 -63255747 - AluSc SINE Alu -184 125 1 360 265 15 23 chr6 126023877 126024009 -63255545 - L1ME1 LINE L1 -3 6163 6033 225 0 0 0 chr6 126024135 126024160 -63255394 + (T)n Simple_repeat Simple_repeat 1 25 0 551 241 197 0 chr6 126024843 126025046 -63254508 - MIR SINE MIR 0 262 20 599 214 20 77 chr6 126026037 126026233 -63253321 + MIR SINE MIR 77 261 -1 1003 215 222 10 chr6 126026696 126027106 -63252448 - Charlie4a DNA MER1_type 0 508 12 324 230 222 15 chr6 126028843 126028978 -63250576 + MER5A DNA MER1_type 27 189 0 455 231 22 0 chr6 126028990 126029081 -63250473 + MLT1L LTR MaLR 169 261 -354 256 246 0 15 chr6 126029276 126029341 -63250213 + MLT1L LTR MaLR 548 611 -4 375 228 119 0 chr6 126030323 126030424 -63249130 + L2 LINE L2 3201 3313 0 249 280 136 0 chr6 126030547 126030665 -63248889 - MIR3 SINE MIR -15 193 60 3114 60 3 3 chr6 126030683 126031069 -63248485 - L1PA5 LINE L1 0 6154 5769 7395 38 1 0 chr6 126031079 126032523 -63247031 - L1PA5 LINE L1 -6 6148 4709 203 245 75 0 chr6 126032611 126032664 -63246890 + L2 LINE L2 3255 3311 -2 192 271 14 29 chr6 126034307 126034377 -63245177 - L2 LINE L2 -1058 2256 2188 459 0 0 0 chr6 126035260 126035311 -63244243 + (CA)n Simple_repeat Simple_repeat 2 52 0 213 316 79 13 chr6 126035676 126035752 -63243802 + MIR SINE MIR 25 105 -103 2260 217 80 80 chr6 126035828 126036386 -63243168 + L1ME3A LINE L1 4394 4950 -1220 1934 217 44 18 chr6 126036386 126036838 -63242716 + MLT1C LTR MaLR 4 467 0 2260 217 80 80 chr6 126036838 126038062 -63241492 + L1ME3A LINE L1 4950 6170 0 1976 170 43 0 chr6 126039532 126039856 -63239698 + MER58B DNA MER1_type 1 338 -3 285 266 124 47 chr6 126040015 126040123 -63239431 - MER112 DNA MER1_type -11 249 122 2565 156 5 5 chr6 126040123 126040513 -63239041 + MLT1B LTR MaLR 1 390 0 285 266 124 47 chr6 126040513 126040573 -63238981 - MER112 DNA MER1_type -138 122 68 368 256 179 8 chr6 126040728 126040845 -63238709 - MIR SINE MIR -49 213 77 724 279 45 16 chr6 126040961 126041205 -63238349 - MIR SINE MIR 0 262 12 2284 142 32 6 chr6 126041246 126041585 -63237969 + MER7A DNA MER2_type 1 346 0 363 209 0 0 chr6 126041640 126041707 -63237847 - L2 LINE L2 -2 3270 3204 24 32 0 0 chr6 126041886 126041917 -63237637 + AT_rich Low_complexity Low_complexity 1 31 0 450 279 128 22 chr6 126042430 126042656 -63236898 + L1ME4a LINE L1 5638 5887 -234 423 0 0 0 chr6 126042678 126042725 -63236829 + (TA)n Simple_repeat Simple_repeat 2 48 0 2340 91 0 3 chr6 126042779 126043076 -63236478 - AluSx SINE Alu -16 296 1 21 36 0 0 chr6 126043328 126043356 -63236198 + AT_rich Low_complexity Low_complexity 1 28 0 357 239 0 0 chr6 126043458 126043525 -63236029 - L2 LINE L2 0 3272 3206 382 300 23 15 chr6 126043659 126043789 -63235765 + MIR SINE MIR 58 188 -74 2308 116 62 73 chr6 126047062 126047449 -63232105 + MSTA LTR MaLR 1 384 -44 2196 103 14 0 chr6 126047449 126047741 -63231813 - AluSx SINE Alu -16 296 1 2308 116 62 73 chr6 126047741 126047775 -63231779 + MSTA LTR MaLR 384 417 -11 216 359 109 19 chr6 126049831 126049987 -63229567 + MIR3 SINE MIR 16 185 -23 626 168 255 13 chr6 126050324 126050473 -63229081 - MER53 DNA DNA -4 185 1 309 250 19 46 chr6 126052697 126052805 -63226749 - MER5A DNA MER1_type -71 118 14 2272 129 0 0 chr6 126052840 126053150 -63226404 + AluSg SINE Alu 1 310 0 980 241 164 40 chr6 126053239 126053659 -63225895 - LTR33 LTR ERVL -2 519 48 571 215 103 33 chr6 126054613 126054932 -63224622 - MER113 DNA MER1_type? -154 367 1 255 61 0 0 chr6 126057611 126057644 -63221910 + (T)n Simple_repeat Simple_repeat 1 33 0 201 323 75 23 chr6 126057731 126057864 -63221690 + MIR SINE MIR 69 208 -54 373 289 0 0 chr6 126058647 126058730 -63220824 + MIR SINE MIR 90 172 -90 24 0 0 0 chr6 126059774 126059798 -63219756 + AT_rich Low_complexity Low_complexity 1 24 0 1775 145 69 3 chr6 126060722 126061011 -63218543 - AluJo SINE Alu -3 309 2 605 265 131 18 chr6 126061588 126061924 -63217630 + L1ME LINE L1 5391 5764 -357 381 176 14 27 chr6 126061927 126062001 -63217553 + L2 LINE L2 3238 3310 -3 23 0 0 0 chr6 126064836 126064859 -63214695 + AT_rich Low_complexity Low_complexity 1 23 0 7850 37 6 0 chr6 126066121 126067732 -63211822 + L1PA5 LINE L1 4616 6231 0 476 228 101 63 chr6 126068268 126068457 -63211097 - Charlie8 DNA MER1_type -2185 232 37 494 280 58 34 chr6 126070388 126070595 -63208959 + MIR SINE MIR 21 232 -30 195 129 0 0 chr6 126071363 126071394 -63208160 + (TATATG)n Simple_repeat Simple_repeat 4 34 0 292 279 105 65 chr6 126071640 126071869 -63207685 + L2 LINE L2 3063 3300 -13 296 250 148 19 chr6 126071902 126072010 -63207544 - MIR3 SINE MIR -5 203 82 546 189 37 79 chr6 126073313 126073356 -63206198 + MER103 DNA DNA 8 51 -115 3688 135 35 2 chr6 126073356 126073935 -63205619 + L1MB2 LINE L1 5574 6171 0 546 189 37 79 chr6 126073935 126074055 -63205499 + MER103 DNA DNA 51 164 -2 303 313 42 28 chr6 126074241 126074423 -63205131 + MIR SINE MIR 42 223 -39 460 307 95 11 chr6 126074599 126074788 -63204766 + MIR3 SINE MIR 1 205 -3 180 279 59 0 chr6 126074823 126074891 -63204663 - L2 LINE L2 -4 3309 3238 1038 230 8 23 chr6 126077265 126077530 -63202024 - L1M4 LINE L1 -1711 4435 4175 273 302 47 18 chr6 126077547 126077716 -63201838 - L1ME4a LINE L1 -224 5897 5724 710 273 96 40 chr6 126078739 126079061 -63200493 + L1ME3A LINE L1 5541 5880 -290 4312 56 6 8 chr6 126080404 126080918 -63198636 - LTR10D LTR ERV1 0 513 1 21 0 0 0 chr6 126081438 126081459 -63198095 + AT_rich Low_complexity Low_complexity 1 21 0 221 0 35 0 chr6 126081460 126081489 -63198065 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1717 173 20 10 chr6 126081495 126081801 -63197753 + AluJb SINE Alu 1 309 -3 599 333 128 26 chr6 126083381 126083732 -63195822 + L3 LINE CR1 416 802 -775 718 327 42 47 chr6 126084379 126084804 -63194750 + L3 LINE CR1 869 1291 -286 238 260 236 8 chr6 126084870 126084993 -63194561 + MIR3 SINE MIR 50 200 -8 1374 197 213 21 chr6 126085194 126085616 -63193938 + MLT1D LTR MaLR 1 503 -2 278 320 80 27 chr6 126086440 126086590 -63192964 + MIR3 SINE MIR 5 162 -46 216 0 0 0 chr6 126087001 126087025 -63192529 + (CA)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr6 126089852 126089873 -63189681 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 285 321 0 0 chr6 126089936 126090017 -63189537 - MIR SINE MIR -65 143 63 208 352 11 11 chr6 126091033 126091124 -63188430 + L2 LINE L2 3182 3272 0 294 87 0 0 chr6 126091918 126091964 -63187590 + (CA)n Simple_repeat Simple_repeat 2 47 0 231 136 68 34 chr6 126096301 126096360 -63183194 - L1ME4a LINE L1 0 6121 6061 832 301 51 36 chr6 126096727 126097062 -63182492 - MER102b DNA MER1_type 0 341 2 403 285 92 34 chr6 126097384 126097591 -63181963 - L2 LINE L2 -1445 1869 1651 1380 201 0 0 chr6 126098645 126098884 -63180670 - AluJb SINE Alu -26 286 48 2274 221 80 8 chr6 126100751 126101348 -63178206 - MER114 LTR ERV 0 648 9 22 94 0 0 chr6 126101491 126101555 -63177999 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr6 126103850 126103872 -63175682 + AT_rich Low_complexity Low_complexity 1 22 0 1209 218 84 38 chr6 126104814 126105228 -63174326 + MLT1C LTR MaLR 32 465 -2 226 266 0 16 chr6 126107647 126107711 -63171843 + MIR SINE MIR 39 101 -107 676 218 61 0 chr6 126109278 126109443 -63170111 + MIR SINE MIR 12 186 -76 527 257 86 0 chr6 126109821 126109973 -63169581 + MIR SINE MIR 60 224 -38 207 200 0 0 chr6 126111091 126111126 -63168428 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 813 240 36 5 chr6 126111151 126111348 -63168206 - MIR SINE MIR -21 241 34 2111 110 0 0 chr6 126111348 126111654 -63167900 - AluSx SINE Alu 0 306 1 813 240 36 5 chr6 126111654 126111676 -63167878 - MIR SINE MIR -228 34 14 321 249 9 42 chr6 126111704 126111810 -63167744 + MIR3 SINE MIR 72 175 -33 237 279 69 85 chr6 126112028 126112202 -63167352 + L2 LINE L2 2081 2251 -1063 2055 119 58 0 chr6 126112202 126112495 -63167059 + AluSq SINE Alu 1 310 -3 237 279 69 85 chr6 126112495 126112567 -63166987 + L2 LINE L2 2251 2323 -991 191 313 119 31 chr6 126112737 126112897 -63166657 + L2 LINE L2 2600 2773 -541 881 245 90 29 chr6 126113680 126113925 -63165629 + MIR SINE MIR 3 262 0 237 392 54 8 chr6 126113932 126114062 -63165492 + L2 LINE L2 3137 3272 0 253 258 45 71 chr6 126114245 126114400 -63165154 + MIR3 SINE MIR 6 156 -52 1777 170 0 10 chr6 126114404 126114692 -63164862 - AluJb SINE Alu -13 299 15 182 308 0 39 chr6 126114994 126115046 -63164508 + L2 LINE L2 3137 3186 -86 960 236 83 62 chr6 126115052 126115488 -63164066 + MLT1J1 LTR MaLR 2 446 0 277 325 32 32 chr6 126115702 126115825 -63163729 - L2 LINE L2 -213 3059 2937 247 324 20 34 chr6 126117324 126117472 -63162082 + G-rich Low_complexity Low_complexity 2 147 0 35 41 0 0 chr6 126117878 126117927 -63161627 + GC_rich Low_complexity Low_complexity 1 49 0 24 67 0 0 chr6 126118035 126118080 -63161474 + GC_rich Low_complexity Low_complexity 1 45 0 22 56 0 0 chr6 126118107 126118143 -63161411 + GC_rich Low_complexity Low_complexity 1 36 0 36 23 0 0 chr6 126118154 126118197 -63161357 + GC_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 126118296 126118317 -63161237 + GC_rich Low_complexity Low_complexity 1 21 0 290 239 0 0 chr6 126119716 126119783 -63159771 - MIR SINE MIR -112 150 84 330 291 50 54 chr6 126120024 126120044 -63159510 + MIR SINE MIR 4 23 -206 933 251 0 5 chr6 126120044 126120231 -63159323 - MER5A DNA MER1_type 0 189 4 330 291 50 54 chr6 126120231 126120243 -63159311 + MIR SINE MIR 23 34 -195 1228 185 58 65 chr6 126120243 126120568 -63158986 + MER33 DNA MER1_type 2 324 0 330 291 50 54 chr6 126120568 126120698 -63158856 + MIR SINE MIR 34 166 -63 348 83 0 0 chr6 126120834 126120882 -63158672 + (TC)n Simple_repeat Simple_repeat 2 49 0 625 268 72 82 chr6 126121684 126122297 -63157257 + L1ME4a LINE L1 5513 6119 -2 1513 195 60 13 chr6 126122539 126122837 -63156717 + AluJo SINE Alu 1 312 0 298 163 0 0 chr6 126124253 126124302 -63155252 - LTR67 LTR ERVL 0 557 509 1626 174 53 0 chr6 126124302 126124584 -63154970 + AluJb SINE Alu 1 297 -15 396 243 0 19 chr6 126124617 126124720 -63154834 - LTR67 LTR ERVL -29 528 428 2643 119 8 16 chr6 126125637 126126015 -63153539 + THE1C LTR MaLR 1 375 0 1484 239 149 0 chr6 126126137 126126526 -63153028 - MLT1J2 LTR MaLR -3 447 1 447 274 16 0 chr6 126127106 126127230 -63152324 - L1MC/D LINE L1 -2033 5775 5650 199 202 24 0 chr6 126127317 126127401 -63152153 + (TA)n Simple_repeat Simple_repeat 2 87 0 2701 7 0 0 chr6 126127677 126127966 -63151588 + AluY SINE Alu 22 310 -1 321 311 53 29 chr6 126128148 126128354 -63151200 + L1ME LINE L1 4075 4285 -1861 23 0 0 0 chr6 126128613 126128636 -63150918 + AT_rich Low_complexity Low_complexity 1 23 0 864 261 65 45 chr6 126128748 126129004 -63150550 - LTR16C LTR ERVL -2 489 223 2166 161 186 18 chr6 126129004 126129446 -63150108 - MLT2B1 LTR ERVL 0 520 5 864 261 65 45 chr6 126129446 126129526 -63150028 - LTR16C LTR ERVL -268 223 146 422 268 108 16 chr6 126129695 126129889 -63149665 + L1ME LINE L1 4485 4696 -1450 22 70 0 0 chr6 126130160 126130203 -63149351 + AT_rich Low_complexity Low_complexity 1 43 0 1317 312 86 24 chr6 126130478 126131203 -63148351 - L2 LINE L2 -3 3310 2507 6738 96 6 2 chr6 126131203 126132358 -63147196 + L1PA13 LINE L1 4990 6160 -3 1317 312 86 24 chr6 126132358 126132625 -63146929 - L2 LINE L2 -806 2507 2258 373 293 38 25 chr6 126132992 126133149 -63146405 + L1ME LINE L1 5617 5775 -346 24 53 0 0 chr6 126134747 126134785 -63144769 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 126135411 126135432 -63144122 + AT_rich Low_complexity Low_complexity 1 21 0 203 337 88 47 chr6 126135489 126135682 -63143872 + L2 LINE L2 1594 1794 -1520 1251 84 0 0 chr6 126135823 126135978 -63143576 - AluSx SINE Alu -157 155 1 331 97 81 32 chr6 126135989 126136051 -63143503 - L1ME1 LINE L1 -246 5920 5856 * 448 168 1 0 chr6 126136047 126136130 -63143424 - L1PA15 LINE L1 -78 6085 6002 270 277 59 30 chr6 126136899 126137000 -63142554 - MIR SINE MIR -16 246 143 279 322 208 16 chr6 126137070 126137100 -63142454 - MIR SINE MIR -1 261 238 2346 92 3 0 chr6 126137100 126137403 -63142151 - AluSg SINE Alu -6 304 1 279 322 208 16 chr6 126137403 126137555 -63141999 - MIR SINE MIR -24 238 44 2224 185 61 18 chr6 126137678 126138171 -63141383 - L1MB7 LINE L1 -9 6175 5662 364 284 65 13 chr6 126138257 126138412 -63141142 - MER103 DNA DNA -2 164 2 253 250 0 31 chr6 126138799 126138863 -63140691 + L2 LINE L2 3186 3247 -25 270 345 35 17 chr6 126138910 126139026 -63140528 - MIR SINE MIR -61 147 30 1680 168 30 17 chr6 126139759 126140057 -63139497 - AluJb SINE Alu -10 302 1 288 53 0 0 chr6 126140754 126140792 -63138762 + (T)n Simple_repeat Simple_repeat 1 38 0 267 241 167 19 chr6 126141342 126141450 -63138104 + MIR SINE MIR 81 204 -58 2245 92 3 3 chr6 126141569 126141864 -63137690 - AluSp SINE Alu -18 295 1 678 247 29 18 chr6 126143140 126143310 -63136244 - MER5B DNA MER1_type 0 178 7 224 264 0 0 chr6 126143381 126143434 -63136120 + L2 LINE L2 2596 2648 -666 2456 155 15 10 chr6 126143484 126143863 -63135691 - LTR32 LTR ERVL 0 471 88 1583 151 74 44 chr6 126143863 126144161 -63135393 - AluJb SINE Alu -5 307 1 2456 155 15 10 chr6 126144161 126144174 -63135380 - LTR32 LTR ERVL -383 88 77 529 284 132 0 chr6 126144285 126144475 -63135079 - MIR SINE MIR -2 260 46 399 343 88 56 chr6 126144513 126145193 -63134361 + HAL1 LINE L1 10 711 -1796 1868 215 71 49 chr6 126145272 126145766 -63133788 - MLT1D LTR MaLR 0 505 1 1366 166 65 55 chr6 126145791 126146116 -63133438 + L1MC3 LINE L1 7458 7785 0 23 0 0 0 chr6 126146239 126146262 -63133292 + AT_rich Low_complexity Low_complexity 1 23 0 504 356 47 64 chr6 126146270 126146613 -63132941 + L2 LINE L2 2934 3270 -2 928 26 43 0 chr6 126147021 126147138 -63132416 - L1PA4 LINE L1 -1 6154 6033 43572 34 23 1 chr6 126147238 126153108 -63126446 - L1PA4 LINE L1 -154 6001 4 221 264 90 92 chr6 126153291 126153659 -63125895 + L2 LINE L2 2830 3196 -117 584 99 0 12 chr6 126153770 126153851 -63125703 + MADE1 DNA Mariner 1 80 0 22 0 0 0 chr6 126155266 126155288 -63124266 + AT_rich Low_complexity Low_complexity 1 22 0 956 323 65 2 chr6 126155489 126155889 -63123665 + MLT1J LTR MaLR 41 465 -46 2012 114 0 18 chr6 126156154 126156435 -63123119 - AluSx SINE Alu -36 276 1 645 259 119 51 chr6 126156583 126156993 -63122561 - L1ME4a LINE L1 -209 5912 5475 4250 135 25 51 chr6 126157025 126157834 -63121720 - L1MB3 LINE L1 -7 6176 5389 198 26 77 0 chr6 126157855 126157894 -63121660 + (TA)n Simple_repeat Simple_repeat 2 43 0 38 22 0 0 chr6 126157907 126157952 -63121602 + AT_rich Low_complexity Low_complexity 1 45 0 468 102 89 0 chr6 126157958 126158274 -63121280 + (TA)n Simple_repeat Simple_repeat 1 344 0 310 292 22 0 chr6 126158294 126158383 -63121171 - L1MC4 LINE L1 -1337 6705 6615 806 159 153 6 chr6 126158418 126158575 -63120979 + MER5A DNA MER1_type 10 189 0 501 126 19 19 chr6 126158876 126158979 -63120575 + CT-rich Low_complexity Low_complexity 1 103 0 1664 172 11 28 chr6 126158993 126159278 -63120276 - AluJo SINE Alu -19 293 14 529 157 33 0 chr6 126159282 126159403 -63120151 + MER113 DNA MER1_type? 117 241 -280 923 239 29 16 chr6 126159585 126159828 -63119726 - MIR SINE MIR -2 260 15 378 0 0 0 chr6 126160208 126160250 -63119304 + (TA)n Simple_repeat Simple_repeat 2 43 0 3341 94 9 18 chr6 126160250 126160695 -63118859 - MLT2A2 LTR ERVL -12 441 1 9822 72 11 6 chr6 126160695 126161934 -63117620 - HERVL-A2 LTR ERVL 0 5654 4410 189 0 0 0 chr6 126162362 126162383 -63117171 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 * 1186 55 24 0 chr6 126162382 126162547 -63117007 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 1259 161 0 0 chr6 126162548 126162734 -63116820 - AluSx SINE Alu -32 280 95 454 85 0 0 chr6 126162737 126162796 -63116758 - HERVL LTR ERVL -762 4892 4834 749 133 0 9 chr6 126162796 126162901 -63116653 - AluSx SINE Alu -208 105 2 1190 236 72 23 chr6 126163379 126163726 -63115828 + MLT1A1 LTR MaLR 2 365 0 26 50 0 0 chr6 126163768 126163808 -63115746 + AT_rich Low_complexity Low_complexity 1 40 0 234 242 125 78 chr6 126164782 126164910 -63114644 + MIR3 SINE MIR 10 143 -65 232 314 0 0 chr6 126166471 126166541 -63113013 + L2 LINE L2 3244 3313 0 270 289 0 22 chr6 126167417 126167507 -63112047 - L2 LINE L2 0 3313 3226 1127 264 64 10 chr6 126168477 126168919 -63110635 - MLT1J LTR MaLR 0 511 6 1026 135 10 101 chr6 126168979 126169103 -63110451 + MER5A DNA MER1_type 2 101 -88 1812 171 3 13 chr6 126169103 126169413 -63110141 + AluJo SINE Alu 1 307 -5 1026 135 10 101 chr6 126169413 126169495 -63110059 + MER5A DNA MER1_type 101 189 0 829 263 38 29 chr6 126169913 126170153 -63109401 + MIR SINE MIR 18 259 -3 2307 100 0 3 chr6 126170593 126170894 -63108660 + AluSx SINE Alu 1 300 -12 306 285 85 46 chr6 126170904 126171034 -63108520 + L2 LINE L2 3137 3271 -1 181 320 0 0 chr6 126172094 126172144 -63107410 - MIR SINE MIR -64 144 95 195 342 111 0 chr6 126172151 126172268 -63107286 + MIR3 SINE MIR 10 139 -69 271 220 76 34 chr6 126172412 126172530 -63107024 - L1MC5 LINE L1 -32 7929 7807 27 73 0 0 chr6 126172560 126172615 -63106939 + AT_rich Low_complexity Low_complexity 1 55 0 229 83 0 28 chr6 126172654 126172690 -63106864 + L1MA8 LINE L1 6164 6198 -93 1334 156 53 0 chr6 126172719 126172962 -63106592 - L1MA8 LINE L1 -75 6216 5961 267 284 0 0 chr6 126172960 126173041 -63106513 - L1MC5 LINE L1 -178 7783 7703 * 337 36 161 36 chr6 126173059 126173115 -63106439 - L1PA6 LINE L1 -7 6147 6085 32062 98 12 20 chr6 126173116 126179499 -63100055 - L1PA7 LINE L1 -35 6434 1 2384 86 0 0 chr6 126179504 126179795 -63099759 - AluSc SINE Alu -16 293 3 1163 233 33 35 chr6 126179802 126180201 -63099353 - L1MC5 LINE L1 -262 7699 7302 207 235 137 39 chr6 126181261 126181363 -63098191 + MIR SINE MIR 53 164 -98 1368 156 0 41 chr6 126181484 126181728 -63097826 + AluJo SINE Alu 1 234 -78 413 203 0 0 chr6 126181843 126181922 -63097632 + AluJo SINE Alu 232 310 -2 220 319 171 29 chr6 126181931 126182141 -63097413 + L2 LINE L2 2737 2976 -338 2436 170 39 24 chr6 126182629 126183094 -63096460 - MLT1F1 LTR MaLR 0 567 96 268 175 188 0 chr6 126183094 126183174 -63096380 - MIR SINE MIR -45 217 123 32 57 0 0 chr6 126183599 126183652 -63095902 + AT_rich Low_complexity Low_complexity 1 53 0 696 230 109 0 chr6 126183695 126183860 -63095694 - MIR SINE MIR -64 198 16 251 311 28 9 chr6 126184609 126184715 -63094839 - MIR3 SINE MIR -11 197 90 1164 263 88 32 chr6 126184726 126185092 -63094462 + LTR33 LTR ERVL 21 420 -101 590 237 23 0 chr6 126185092 126185223 -63094331 + MER94 DNA DNA 1 134 0 1164 263 88 32 chr6 126185223 126185323 -63094231 + LTR33 LTR ERVL 420 513 -8 3697 145 17 28 chr6 126185839 126186480 -63093074 - L1MB4 LINE L1 -1 6179 5546 186 125 304 18 chr6 126186966 126187022 -63092532 + L2 LINE L2 3169 3240 -32 190 286 98 45 chr6 126187160 126187272 -63092282 + MIR SINE MIR 68 185 -77 213 321 0 12 chr6 126187409 126187490 -63092064 + MIR SINE MIR 183 262 0 26 0 0 0 chr6 126187791 126187817 -63091737 + AT_rich Low_complexity Low_complexity 1 26 0 258 56 0 0 chr6 126188084 126188120 -63091434 + (CA)n Simple_repeat Simple_repeat 2 37 0 241 233 0 17 chr6 126188336 126188396 -63091158 - L1ME4a LINE L1 -102 6019 5961 435 293 145 24 chr6 126188444 126188693 -63090861 - L1MC4a LINE L1 -1955 5853 5575 2095 117 3 59 chr6 126188758 126189158 -63090396 - Tigger3(Golem) DNA MER2_type -1 3028 1 273 231 154 13 chr6 126189160 126189238 -63090316 + L2 LINE L2 3182 3270 -2 217 233 0 0 chr6 126189233 126189276 -63090278 - MIR SINE MIR -3 259 217 * 1546 182 58 13 chr6 126189343 126189686 -63089868 - MLT1A1 LTR MaLR 0 365 1 239 273 15 0 chr6 126189691 126189757 -63089797 - MIR SINE MIR -181 81 15 402 398 56 5 chr6 126189790 126190006 -63089548 + L2 LINE L2 3005 3231 -41 3257 132 2 23 chr6 126190446 126190960 -63088594 + L1MB3 LINE L1 5429 5931 -252 753 94 168 74 chr6 126190961 126191110 -63088444 + Tigger1 DNA MER2_type 1 163 -2255 * 1178 139 69 0 chr6 126191091 126191293 -63088261 + Tigger1 DNA MER2_type 2202 2417 -1 1541 128 20 20 chr6 126191293 126191544 -63088010 + L1MB3 LINE L1 5930 6180 -3 289 197 26 40 chr6 126193403 126193479 -63086075 + MLT1K LTR MaLR 189 263 -325 1852 212 136 7 chr6 126193623 126194080 -63085474 + MLT1E2 LTR MaLR 111 626 0 1224 88 0 0 chr6 126194154 126194325 -63085229 + (TTCC)n Simple_repeat Simple_repeat 2 172 0 306 204 20 61 chr6 126194338 126194436 -63085118 + LTR67 LTR ERVL 457 550 -7 259 266 16 0 chr6 126197080 126197144 -63082410 + L2 LINE L2 3204 3268 -4 223 235 12 49 chr6 126197172 126197253 -63082301 + MIR SINE MIR 113 190 -72 225 259 0 0 chr6 126197714 126197768 -63081786 + MIR SINE MIR 188 241 -21 695 263 141 20 chr6 126197817 126198072 -63081482 + L2 LINE L2 3017 3302 -11 851 240 20 20 chr6 126198119 126198319 -63081235 - MER63A DNA MER1_type -10 200 1 786 270 158 14 chr6 126198377 126198835 -63080719 + MLT1G1 LTR MaLR 8 595 0 4625 279 84 35 chr6 126198984 126199503 -63080051 - L2 LINE L2 -780 2534 2042 2224 105 7 0 chr6 126199503 126199797 -63079757 + AluSg SINE Alu 5 300 -10 4625 279 84 35 chr6 126199797 126200643 -63078911 - L2 LINE L2 -1272 2042 1239 306 0 0 0 chr6 126200643 126200677 -63078877 + (TG)n Simple_repeat Simple_repeat 2 35 0 4625 279 84 35 chr6 126200677 126201359 -63078195 - L2 LINE L2 -2075 1239 384 769 263 184 6 chr6 126201579 126201910 -63077644 - MER20B DNA MER1_type -363 420 31 423 238 104 54 chr6 126201927 126202167 -63077387 - L2 LINE L2 -2976 338 87 406 339 123 31 chr6 126202331 126202753 -63076801 - L1ME LINE L1 -305 5816 5356 279 0 0 0 chr6 126202835 126202866 -63076688 + (CA)n Simple_repeat Simple_repeat 1 31 0 1017 123 136 0 chr6 126203006 126203161 -63076393 - MER5B DNA MER1_type 0 178 3 285 253 121 0 chr6 126204290 126204389 -63075165 + L2 LINE L2 3199 3309 -4 21 0 0 0 chr6 126204963 126204984 -63074570 + AT_rich Low_complexity Low_complexity 1 21 0 635 285 69 65 chr6 126205633 126206169 -63073385 + L1MEd LINE L1 318 855 -5264 6145 122 12 0 chr6 126206322 126206525 -63073029 - L1PA16 LINE L1 0 6166 5967 2779 10 0 0 chr6 126206525 126206827 -63072727 - AluYa5 SINE Alu -9 302 1 6145 122 12 0 chr6 126206827 126208163 -63071391 - L1PA16 LINE L1 -199 5967 4627 383 241 101 13 chr6 126208168 126208326 -63071228 + L1MEd LINE L1 865 1036 -5083 210 118 0 0 chr6 126208768 126208802 -63070752 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 1509 203 7 0 chr6 126208823 126208943 -63070611 + AluJo SINE Alu 1 119 -193 183 42 0 0 chr6 126208943 126208967 -63070587 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1509 203 7 0 chr6 126208967 126209117 -63070437 + AluJo SINE Alu 119 273 -39 225 212 12 24 chr6 126209144 126209229 -63070325 + GA-rich Low_complexity Low_complexity 6 89 0 1283 255 65 15 chr6 126209483 126209942 -63069612 + L1MC4 LINE L1 6977 7458 -584 397 238 0 0 chr6 126209944 126210024 -63069530 + MER116 DNA Mariner 1 80 0 1785 199 28 87 chr6 126210040 126210638 -63068916 + L1MC4 LINE L1 7479 8041 -1 398 298 106 0 chr6 126211771 126211922 -63067632 + MIR SINE MIR 48 214 -48 207 269 19 37 chr6 126212076 126212184 -63067370 + CT-rich Low_complexity Low_complexity 4 109 0 254 209 291 27 chr6 126213128 126213238 -63066316 + L1ME4a LINE L1 5982 6120 -1 786 253 6 17 chr6 126213323 126213501 -63066053 + MER5B DNA MER1_type 1 176 -2 197 323 50 10 chr6 126213552 126213651 -63065903 + L2 LINE L2 2774 2876 -438 * 218 121 0 0 chr6 126213644 126213677 -63065877 + L2 LINE L2 3250 3282 -31 456 252 54 0 chr6 126213963 126214074 -63065480 + L2 LINE L2 3193 3309 -4 693 165 47 8 chr6 126214292 126214348 -63065206 + MER50 LTR ERV1 1 53 -681 354 45 0 0 chr6 126214348 126214392 -63065162 + (CA)n Simple_repeat Simple_repeat 2 45 0 693 165 47 8 chr6 126214392 126214462 -63065092 + MER50 LTR ERV1 53 132 -602 1696 95 107 0 chr6 126214548 126214801 -63064753 - L1PA14 LINE L1 -1 6160 5881 463 211 23 75 chr6 126214807 126214940 -63064614 + L2 LINE L2 3187 3312 -1 183 80 0 0 chr6 126215736 126215761 -63063793 + (A)n Simple_repeat Simple_repeat 1 25 0 195 42 0 0 chr6 126217009 126217033 -63062521 + (TG)n Simple_repeat Simple_repeat 2 25 0 372 22 0 0 chr6 126218495 126218540 -63061014 + (TG)n Simple_repeat Simple_repeat 2 46 0 2106 125 7 3 chr6 126218930 126219235 -63060319 - AluY SINE Alu -5 306 1 267 341 73 6 chr6 126220078 126220257 -63059297 + L2 LINE L2 1518 1708 -1606 335 317 49 61 chr6 126220286 126220630 -63058924 + L2 LINE L2 1823 2162 -1152 317 197 0 28 chr6 126220665 126220736 -63058818 - MER116 DNA Mariner -10 70 2 556 363 128 3 chr6 126220738 126221129 -63058425 + L2 LINE L2 2227 2666 -648 2120 179 11 14 chr6 126221148 126221512 -63058042 + MLT1A1 LTR MaLR 3 365 0 273 293 126 40 chr6 126222730 126222928 -63056626 + L2 LINE L2 2845 3059 -213 344 289 204 0 chr6 126222961 126223103 -63056451 + MER91A DNA MER1_type 1 171 -25 442 346 96 10 chr6 126223228 126223436 -63056118 - MIR SINE MIR -35 227 2 456 209 52 52 chr6 126225602 126225736 -63053818 - L2 LINE L2 0 3313 3180 2249 114 7 0 chr6 126226190 126226498 -63053056 - AluSg SINE Alu 0 310 1 21 0 0 0 chr6 126227169 126227190 -63052364 + AT_rich Low_complexity Low_complexity 1 21 0 860 194 44 206 chr6 126227720 126228450 -63051104 - L2 LINE L2 0 3313 2702 287 206 73 0 chr6 126230655 126230723 -63048831 - MLT1J1 LTR MaLR -16 430 358 388 200 164 129 chr6 126230811 126230981 -63048573 - MLT1J LTR MaLR -217 233 52 2496 151 3 0 chr6 126230981 126231346 -63048208 - MER47A DNA MER2_type 0 366 1 388 200 164 129 chr6 126231346 126231400 -63048154 - MLT1J LTR MaLR -398 52 1 1986 236 43 68 chr6 126231698 126232326 -63047228 + LTR9 LTR ERV1 1 612 0 1768 201 70 14 chr6 126232481 126232924 -63046630 + MER110A LTR ERV1 1 468 0 254 337 40 29 chr6 126235043 126235218 -63044336 - L1MC/D LINE L1 -2030 5778 5602 253 296 141 22 chr6 126235235 126235370 -63044184 - MIR SINE MIR -4 258 108 2018 157 32 83 chr6 126235377 126235811 -63043743 - LTR32 LTR ERVL 0 471 60 230 271 171 21 chr6 126235936 126236076 -63043478 - MIR3 SINE MIR -15 193 33 21 57 0 0 chr6 126236314 126236349 -63043205 + AT_rich Low_complexity Low_complexity 1 35 0 1732 158 21 11 chr6 126236675 126236992 -63042562 + AluJo SINE Alu 1 320 0 823 242 54 0 chr6 126238326 126238512 -63041042 - MIR SINE MIR -8 254 59 5049 153 12 14 chr6 126238547 126239384 -63040170 + L1MB4 LINE L1 5319 6156 -24 312 91 0 0 chr6 126239384 126239428 -63040126 + (TA)n Simple_repeat Simple_repeat 2 45 0 1859 147 65 34 chr6 126239428 126239781 -63039773 - MLT1A1 LTR MaLR -1 364 1 5049 153 12 14 chr6 126239781 126239806 -63039748 + L1MB4 LINE L1 6154 6180 0 1619 129 3 76 chr6 126239810 126240112 -63039442 + AluSx SINE Alu 1 280 -32 198 0 0 0 chr6 126240112 126240134 -63039420 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 207 0 0 0 chr6 126241736 126241759 -63037795 + (TG)n Simple_repeat Simple_repeat 1 23 0 2603 176 60 14 chr6 126242672 126243189 -63036365 + MER67A LTR ERV1 3 543 0 348 292 42 0 chr6 126243517 126243637 -63035917 + L2 LINE L2 2941 3065 -248 202 342 40 48 chr6 126244348 126244576 -63034978 - L2 LINE L2 -219 3053 2828 2277 111 48 23 chr6 126245678 126246030 -63033524 + THE1B LTR MaLR 1 361 -3 1857 129 229 6 chr6 126246334 126246684 -63032870 - MSTA LTR MaLR 0 428 1 245 278 0 0 chr6 126247150 126247204 -63032350 + (CA)n Simple_repeat Simple_repeat 2 55 0 2139 144 12 6 chr6 126247204 126247543 -63032011 - MLT2C1 LTR ERVL -56 341 1 390 165 25 25 chr6 126247815 126247936 -63031618 + GA-rich Low_complexity Low_complexity 1 121 0 533 329 83 8 chr6 126248500 126248740 -63030814 - MIR SINE MIR -2 260 3 756 143 84 0 chr6 126248797 126248916 -63030638 - FLAM_A SINE Alu -4 129 1 517 225 29 58 chr6 126249614 126249787 -63029767 - L2 LINE L2 0 3313 3146 627 259 25 20 chr6 126250038 126250239 -63029315 + LTR37B LTR ERV1 204 405 -63 183 250 31 0 chr6 126250282 126250346 -63029208 - L2 LINE L2 -163 3150 3085 509 192 20 0 chr6 126250360 126250459 -63029095 - FLAM_A SINE Alu -6 136 36 974 238 87 61 chr6 126250534 126251111 -63028443 - L2 LINE L2 -231 3082 2487 841 260 202 3 chr6 126252089 126252401 -63027153 - MLT1K LTR MaLR -20 568 195 947 252 25 4 chr6 126254479 126254721 -63024833 + MIR SINE MIR 14 260 -2 419 271 8 23 chr6 126254749 126254878 -63024676 - MIR SINE MIR -10 252 126 386 355 13 0 chr6 126256200 126256352 -63023202 + MIR SINE MIR 97 250 -12 1022 281 58 6 chr6 126257090 126257450 -63022104 + L2 LINE L2 1784 2162 -1152 1384 171 0 84 chr6 126257461 126257782 -63021772 - L1MA10 LINE L1 -5 6329 6036 611 216 89 25 chr6 126258933 126259243 -63020311 + MER69 DNA AcHobo 19 413 -813 4078 254 81 40 chr6 126259306 126260603 -63018951 - HERV16 LTR ERVL -2040 2956 1607 600 252 0 0 chr6 126260602 126260721 -63018833 - HERV16 LTR ERVL -4327 669 551 * 757 207 81 25 chr6 126260820 126261018 -63018536 + MIR SINE MIR 24 232 -30 210 271 212 25 chr6 126261175 126261293 -63018261 + L2 LINE L2 3133 3272 0 487 264 40 0 chr6 126262150 126262298 -63017256 - MER117 DNA MER1_type -43 154 1 480 303 25 6 chr6 126263367 126263519 -63016035 + MER102a DNA MER1_type 77 231 -99 2028 158 37 26 chr6 126263519 126263898 -63015656 + MLT1B LTR MaLR 2 384 -6 328 179 38 104 chr6 126263907 126264013 -63015541 + MER102a DNA MER1_type 232 330 0 1373 91 0 0 chr6 126265373 126265549 -63014005 - AluY SINE Alu -16 295 120 205 178 0 0 chr6 126265552 126265597 -63013957 + T-rich Low_complexity Low_complexity 1 45 0 393 302 50 6 chr6 126266773 126266932 -63012622 - MIR SINE MIR -6 256 91 1308 132 0 0 chr6 126267244 126267434 -63012120 - L1M3 LINE L1 -556 5778 5589 2078 244 114 24 chr6 126267439 126267599 -63011955 + L2 LINE L2 2155 2299 -1014 1847 200 96 42 chr6 126267599 126268078 -63011476 + MLT1D LTR MaLR 1 505 0 2078 244 114 24 chr6 126268078 126268974 -63010580 + L2 LINE L2 2299 3313 0 566 236 36 0 chr6 126269670 126269810 -63009744 - MIR SINE MIR -32 230 86 1947 174 118 22 chr6 126269811 126270226 -63009328 - MLT1C LTR MaLR -12 455 1 213 194 0 0 chr6 126270235 126270271 -63009283 - MIR SINE MIR -179 83 48 287 229 42 51 chr6 126270587 126270705 -63008849 - L2 LINE L2 -3 3269 3153 225 253 88 33 chr6 126271850 126271941 -63007613 + L2 LINE L2 3213 3308 -5 1773 63 0 0 chr6 126272610 126272815 -63006739 + AluSc SINE Alu 64 268 -41 250 250 31 52 chr6 126275182 126275278 -63004276 + MIR SINE MIR 104 197 -65 202 304 29 14 chr6 126275319 126275388 -63004166 + L2 LINE L2 3203 3272 0 588 204 34 14 chr6 126276120 126276267 -63003287 - MIR SINE MIR -32 230 81 245 309 118 0 chr6 126276555 126276665 -63002889 - MER112 DNA MER1_type -131 129 7 450 222 181 7 chr6 126277809 126277953 -63001601 + MER5A DNA MER1_type 13 181 -8 2159 141 0 0 chr6 126278528 126278840 -63000714 + AluSx SINE Alu 1 312 0 728 328 63 11 chr6 126279995 126280266 -62999288 + LTR16A LTR ERVL 166 450 0 196 361 21 35 chr6 126280521 126280665 -62998889 + L2 LINE L2 2915 3056 -216 26 50 0 0 chr6 126280687 126280727 -62998827 + AT_rich Low_complexity Low_complexity 1 40 0 307 276 81 0 chr6 126280948 126281071 -62998483 - MER103 DNA DNA -2 164 32 863 175 12 0 chr6 126281461 126281627 -62997927 - MER5B DNA MER1_type -10 168 1 208 119 0 48 chr6 126282197 126282239 -62997315 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 199 217 117 17 chr6 126282837 126282897 -62996657 - L2 LINE L2 0 3272 3207 322 250 0 0 chr6 126283262 126283334 -62996220 - MLT1K LTR MaLR -6 582 511 432 286 60 37 chr6 126283504 126283721 -62995833 - MIR SINE MIR -1 261 40 807 180 120 0 chr6 126284337 126284520 -62995034 - MER3 DNA MER1_type -4 205 1 378 0 0 0 chr6 126285767 126285809 -62993745 + (TG)n Simple_repeat Simple_repeat 2 43 0 256 177 81 0 chr6 126287482 126287544 -62992010 - MER53 DNA DNA -22 167 101 298 293 81 46 chr6 126287878 126288052 -62991502 - L2 LINE L2 -501 2813 2634 180 229 57 95 chr6 126288028 126288133 -62991421 - MIR SINE MIR -78 130 30 * 6044 118 83 4 chr6 126288887 126289534 -62990020 + Tigger3b DNA MER2_type 1 595 -2433 2205 108 10 10 chr6 126289534 126289840 -62989714 + AluSx SINE Alu 1 306 -6 6044 118 83 4 chr6 126289840 126290324 -62989230 + Tigger3b DNA MER2_type 595 1212 -19 10484 48 73 8 chr6 126290380 126291680 -62987874 + SVA Other Other 1 1385 -1 451 300 139 16 chr6 126292829 126293052 -62986502 + MIR SINE MIR 11 262 0 1363 151 0 24 chr6 126293062 126293274 -62986280 - AluJo SINE Alu -20 292 86 222 266 76 13 chr6 126293828 126293907 -62985647 + L2 LINE L2 3136 3219 -53 7317 48 3 24 chr6 126294760 126295727 -62983827 - L1P LINE L1 -3922 2224 1278 1746 37 0 5 chr6 126295727 126295945 -62983609 + L1PA5 LINE L1 5938 6154 0 1536 98 0 51 chr6 126296567 126296801 -62982753 - AluSq SINE Alu -5 308 87 389 251 141 58 chr6 126298804 126298859 -62980695 - MIR SINE MIR -1 261 212 1938 135 3 3 chr6 126298859 126299181 -62980373 - AluSx SINE Alu 0 322 1 389 251 141 58 chr6 126299181 126299315 -62980239 - MIR SINE MIR -50 212 55 690 273 47 74 chr6 126299430 126299793 -62979761 - L1MEc LINE L1 -4552 1984 1480 1976 116 4 4 chr6 126299813 126300088 -62979466 - AluSx SINE Alu -17 295 21 469 235 41 59 chr6 126300088 126300309 -62979245 - L1MEc LINE L1 -4752 1644 1428 272 336 201 24 chr6 126300477 126301301 -62978253 - L2 LINE L2 -454 2860 1891 22 35 0 0 chr6 126301357 126301386 -62978168 + AT_rich Low_complexity Low_complexity 1 29 0 337 327 162 50 chr6 126301728 126302006 -62977548 - L2 LINE L2 -40 3232 2924 268 315 199 14 chr6 126302115 126302331 -62977223 - L2 LINE L2 -821 2493 2238 407 295 41 0 chr6 126302408 126302530 -62977024 + MIR SINE MIR 17 143 -119 2052 161 85 30 chr6 126302531 126303008 -62976546 - MLT1D LTR MaLR -1 548 1 1828 238 194 39 chr6 126303082 126304161 -62975393 - L2 LINE L2 -72 3241 1954 540 254 143 21 chr6 126305410 126305599 -62973955 + MIR SINE MIR 48 259 -3 284 306 0 18 chr6 126305678 126305789 -62973765 - L2 LINE L2 -1 3312 3204 775 228 91 5 chr6 126305904 126306101 -62973453 + MER58A DNA MER1_type 11 224 0 5811 187 56 38 chr6 126306142 126307556 -62971998 - Charlie1a DNA MER1_type -14 1441 3 702 87 0 0 chr6 126308855 126308958 -62970596 + (CA)n Simple_repeat Simple_repeat 2 104 0 1827 128 22 11 chr6 126313265 126313539 -62966015 + AluSx SINE Alu 1 277 -35 24 32 0 0 chr6 126313903 126313934 -62965620 + AT_rich Low_complexity Low_complexity 1 31 0 34 0 0 0 chr6 126314338 126314372 -62965182 + AT_rich Low_complexity Low_complexity 1 34 0 247 211 18 0 chr6 126315734 126315791 -62963763 + (TAG)n Simple_repeat Simple_repeat 2 59 0 552 229 156 22 chr6 126315826 126316005 -62963549 - MIR SINE MIR -59 203 1 25 51 0 0 chr6 126316303 126316342 -62963212 + AT_rich Low_complexity Low_complexity 1 39 0 1316 169 149 24 chr6 126317076 126317331 -62962223 - AluJo SINE Alu -15 287 1 499 236 132 7 chr6 126317615 126317759 -62961795 - MIR SINE MIR -70 192 31 24 0 0 0 chr6 126318166 126318190 -62961364 + AT_rich Low_complexity Low_complexity 1 24 0 1616 158 64 17 chr6 126318346 126318644 -62960910 - AluJb SINE Alu 0 312 1 1869 149 14 0 chr6 126319869 126320157 -62959397 - AluJo SINE Alu -18 294 3 653 257 84 33 chr6 126320992 126321646 -62957908 + L1MC/D LINE L1 5066 5762 -746 219 69 0 0 chr6 126322714 126322743 -62956811 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 187 282 141 13 chr6 126324928 126325006 -62954548 - L2 LINE L2 -36 3236 3149 180 77 0 0 chr6 126325091 126325117 -62954437 + (A)n Simple_repeat Simple_repeat 1 26 0 2385 57 10 3 chr6 126326612 126326908 -62952646 - AluY SINE Alu -12 299 2 446 276 145 40 chr6 126327726 126328106 -62951448 + MLT1J LTR MaLR 110 615 0 770 249 35 20 chr6 126328248 126328445 -62951109 + MER58A DNA MER1_type 25 224 0 250 148 0 33 chr6 126332560 126332621 -62946933 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 379 196 165 0 chr6 126332782 126332879 -62946675 + L2 LINE L2 3200 3312 -1 584 249 109 63 chr6 126333068 126333482 -62946072 + HAL1b LINE L1 104 536 -812 760 249 21 5 chr6 126333822 126334011 -62945543 - MLT1I LTR MaLR 0 409 218 2857 109 49 38 chr6 126334014 126334546 -62945008 - L1MA7 LINE L1 0 6291 5754 4912 260 73 18 chr6 126334559 126337026 -62942528 + L1MEc LINE L1 373 2932 -3283 2015 189 51 4 chr6 126337031 126337556 -62941998 + L1M4 LINE L1 2650 3199 -2947 447 330 8 8 chr6 126337888 126338006 -62941548 + L2 LINE L2 3155 3272 0 321 266 253 19 chr6 126338481 126338639 -62940915 - MIR SINE MIR -17 245 51 2081 128 3 19 chr6 126338640 126338981 -62940573 + AluJb SINE Alu 1 336 0 2412 67 0 0 chr6 126339566 126339865 -62939689 + AluY SINE Alu 1 299 -12 281 324 0 0 chr6 126341091 126341159 -62938395 - L2 LINE L2 -22 3250 3183 1053 184 0 64 chr6 126341202 126341435 -62938119 + MER20 DNA MER1_type 2 219 0 681 226 127 6 chr6 126341727 126341908 -62937646 - MIR SINE MIR 0 262 60 920 211 6 0 chr6 126342307 126342468 -62937086 + FAM SINE Alu 3 164 -11 198 273 23 34 chr6 126343016 126343104 -62936450 - L2 LINE L2 -3 3269 3183 779 314 35 0 chr6 126343291 126343517 -62936037 + L3 LINE CR1 1335 1568 -9 214 244 0 0 chr6 126344284 126344329 -62935225 - L3b LINE CR1 -9 1574 1530 546 303 21 32 chr6 126345142 126345423 -62934131 + L1MEc LINE L1 492 769 -5627 3661 232 119 29 chr6 126345425 126345493 -62934061 + L1MEc LINE L1 450 511 -5704 2132 143 0 3 chr6 126345493 126345801 -62933753 + AluSx SINE Alu 1 307 -5 3661 232 119 29 chr6 126345801 126346227 -62933327 + L1MEc LINE L1 511 897 -5318 1784 143 86 69 chr6 126346227 126346648 -62932906 + MSTA LTR MaLR 1 428 0 3661 232 119 29 chr6 126346648 126348870 -62930684 + L1MEc LINE L1 897 3398 -2817 7091 40 18 9 chr6 126348870 126349840 -62929714 + L1PA4 LINE L1 5177 6154 -1 3661 232 119 29 chr6 126349840 126349860 -62929694 + L1MEc LINE L1 3398 3415 -2800 220 367 46 18 chr6 126349968 126350077 -62929477 - L3 LINE CR1 -930 647 536 273 283 87 22 chr6 126350706 126350798 -62928756 - L2 LINE L2 -25 3288 3191 223 260 302 24 chr6 126351117 126351286 -62928268 + MIR SINE MIR 33 248 -14 1173 145 60 25 chr6 126351715 126351915 -62927639 - AluJo SINE Alu -21 291 85 199 195 0 24 chr6 126353844 126353885 -62925669 - L3 LINE CR1 -5 1572 1533 1885 167 0 10 chr6 126354323 126354634 -62924920 - AluSx SINE Alu -3 309 2 235 254 127 0 chr6 126355270 126355341 -62924213 + L2 LINE L2 3200 3279 -34 2483 135 2 10 chr6 126356195 126356611 -62922943 + L1MA4 LINE L1 5883 6295 -5 582 243 11 14 chr6 126358347 126358531 -62921023 + MIR SINE MIR 12 240 -22 260 155 14 42 chr6 126358745 126358816 -62920738 + (TA)n Simple_repeat Simple_repeat 2 70 0 191 313 115 0 chr6 126359594 126359690 -62919864 - L2 LINE L2 -294 2978 2872 21 0 0 0 chr6 126359819 126359840 -62919714 + AT_rich Low_complexity Low_complexity 1 21 0 240 340 53 0 chr6 126360472 126360566 -62918988 + L2 LINE L2 3213 3311 -2 24 53 0 0 chr6 126361901 126361939 -62917615 + AT_rich Low_complexity Low_complexity 1 38 0 366 23 0 0 chr6 126361995 126362038 -62917516 + (TG)n Simple_repeat Simple_repeat 2 44 0 200 312 156 0 chr6 126362350 126362427 -62917127 + MIR3 SINE MIR 114 202 -6 1801 122 0 104 chr6 126364053 126364380 -62915174 + AluJb SINE Alu 1 293 -19 21 0 0 0 chr6 126365576 126365597 -62913957 + AT_rich Low_complexity Low_complexity 1 21 0 2299 75 14 0 chr6 126368051 126368346 -62911208 - AluSq SINE Alu -14 299 1 442 271 112 11 chr6 126368964 126369152 -62910402 + L1ME LINE L1 5616 5822 -299 583 296 173 0 chr6 126370027 126370270 -62909284 + L1MC/D LINE L1 5381 5665 -2143 363 270 9 54 chr6 126370284 126370395 -62909159 - MIR SINE MIR -1 261 156 1168 272 82 21 chr6 126370401 126371089 -62908465 - L2 LINE L2 -18 3295 2567 2618 132 24 7 chr6 126371569 126372024 -62907530 + L1MA5 LINE L1 5838 6300 0 23 0 0 0 chr6 126372384 126372407 -62907147 + AT_rich Low_complexity Low_complexity 1 23 0 297 75 0 0 chr6 126372461 126372501 -62907053 + (TG)n Simple_repeat Simple_repeat 1 40 0 588 286 75 51 chr6 126372812 126373067 -62906487 - MIR SINE MIR 0 262 2 21 0 0 0 chr6 126373144 126373165 -62906389 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr6 126373591 126373628 -62905926 + (TG)n Simple_repeat Simple_repeat 2 38 0 206 286 153 10 chr6 126373927 126374025 -62905529 - L2 LINE L2 -13 3300 3189 2153 188 58 2 chr6 126375364 126375833 -62903721 - Charlie4a DNA MER1_type 0 508 14 214 330 0 41 chr6 126376985 126377082 -62902472 - MIR SINE MIR -41 221 129 1523 164 53 63 chr6 126378230 126378609 -62900945 - L1MA10 LINE L1 0 6334 5960 2285 108 0 0 chr6 126379702 126379999 -62899555 + AluSx SINE Alu 3 299 -13 855 199 43 153 chr6 126380555 126380948 -62898606 + Charlie7 DNA MER1_type 2 351 -2261 2541 226 62 61 chr6 126380955 126382019 -62897535 + Charlie7 DNA MER1_type 1482 2549 -63 264 100 0 0 chr6 126382019 126382059 -62897495 + (CATA)n Simple_repeat Simple_repeat 3 42 0 2541 226 62 61 chr6 126382059 126382124 -62897430 + Charlie7 DNA MER1_type 2549 2612 0 242 314 130 49 chr6 126383377 126383562 -62895992 - MIR SINE MIR -13 249 50 604 143 233 0 chr6 126386099 126386232 -62893322 + MIR SINE MIR 63 226 -36 22 0 0 0 chr6 126386456 126386478 -62893076 + AT_rich Low_complexity Low_complexity 1 22 0 2095 130 10 0 chr6 126386575 126386874 -62892680 - AluSx SINE Alu -10 302 1 477 283 17 23 chr6 126387795 126387972 -62891582 - MER5B DNA MER1_type -2 176 1 2316 147 94 112 chr6 126388364 126388989 -62890565 + LTR18B LTR ERVL 1 614 0 2219 103 0 0 chr6 126389302 126389592 -62889962 + AluSx SINE Alu 5 294 -18 1028 185 27 0 chr6 126389677 126389861 -62889693 + MER5A DNA MER1_type 1 189 0 250 222 89 0 chr6 126392112 126392202 -62887352 + L1ME4a LINE L1 6012 6109 -12 64 14 0 0 chr6 126392388 126392459 -62887095 + AT_rich Low_complexity Low_complexity 1 71 0 368 286 126 39 chr6 126392483 126392637 -62886917 + MIR SINE MIR 25 203 -59 2027 125 58 19 chr6 126392637 126392998 -62886556 + THE1C LTR MaLR 1 375 0 368 286 126 39 chr6 126392998 126393049 -62886505 + MIR SINE MIR 203 248 -14 447 35 0 0 chr6 126393493 126393550 -62886004 + (CA)n Simple_repeat Simple_repeat 2 58 0 550 276 71 15 chr6 126394308 126394576 -62884978 - L1ME3A LINE L1 -5 6165 5883 460 260 117 25 chr6 126394608 126395000 -62884554 - L1ME3A LINE L1 -1419 4727 4300 1311 263 47 29 chr6 126395010 126395588 -62883966 - L1ME3A LINE L1 -2057 4089 3502 186 43 0 0 chr6 126397648 126397671 -62881883 + (A)n Simple_repeat Simple_repeat 1 23 0 545 167 20 0 chr6 126400264 126400366 -62879188 - ORSL DNA AcHobo -159 116 13 27 0 0 0 chr6 126400521 126400548 -62879006 + AT_rich Low_complexity Low_complexity 1 27 0 405 54 0 0 chr6 126401831 126401887 -62877667 + (CCAA)n Simple_repeat Simple_repeat 1 56 0 495 319 46 72 chr6 126402324 126402756 -62876798 + L2 LINE L2 1613 2033 -1281 180 374 142 32 chr6 126402783 126402973 -62876581 + L2 LINE L2 1193 1403 -1911 183 266 71 44 chr6 126403658 126403734 -62875820 + L2 LINE L2 1625 1706 -1608 207 0 0 0 chr6 126403734 126403757 -62875797 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 183 266 71 44 chr6 126403757 126403793 -62875761 + L2 LINE L2 1706 1740 -1574 376 298 40 35 chr6 126403816 126404014 -62875540 + L2 LINE L2 1866 2064 -1250 455 360 58 53 chr6 126404236 126404650 -62874904 + L2 LINE L2 2807 3222 -50 1591 273 187 103 chr6 126404798 126405479 -62874075 - L2 LINE L2 0 3313 2691 2329 108 0 3 chr6 126405479 126405793 -62873761 + AluSq SINE Alu 1 313 0 1591 273 187 103 chr6 126405793 126406256 -62873298 - L2 LINE L2 -622 2691 2268 1903 136 3 32 chr6 126406256 126406566 -62872988 - AluJb SINE Alu -6 306 6 344 248 0 53 chr6 126406574 126406707 -62872847 + MER58C DNA MER1_type 60 185 -30 1591 273 187 103 chr6 126406707 126407910 -62871644 - L2 LINE L2 -1051 2262 593 724 175 49 0 chr6 126408167 126408310 -62871244 + MER3 DNA MER1_type 59 208 -1 367 248 103 17 chr6 126408652 126408769 -62870785 + MIR SINE MIR 31 157 -105 282 95 0 0 chr6 126410179 126410221 -62869333 + (CAA)n Simple_repeat Simple_repeat 1 42 0 1097 159 0 0 chr6 126410546 126410709 -62868845 + AluSg/x SINE Alu 135 297 -13 200 250 71 24 chr6 126411027 126411111 -62868443 - L2 LINE L2 -40 3232 3145 486 0 0 0 chr6 126411131 126411185 -62868369 + (CA)n Simple_repeat Simple_repeat 1 54 0 2394 49 31 0 chr6 126411218 126411504 -62868050 + AluY SINE Alu 3 297 -14 2268 121 0 0 chr6 126411633 126411931 -62867623 - AluSq SINE Alu -10 303 6 249 119 0 0 chr6 126412029 126412071 -62867483 + (TG)n Simple_repeat Simple_repeat 1 42 0 685 310 101 57 chr6 126413915 126414347 -62865207 - L2 LINE L2 -1 3271 2774 346 250 82 109 chr6 126414383 126414603 -62864951 + MER112 DNA MER1_type 47 260 0 26 74 0 0 chr6 126415776 126415830 -62863724 + AT_rich Low_complexity Low_complexity 1 54 0 1033 213 103 3 chr6 126417093 126417384 -62862170 - Charlie4a DNA MER1_type -9 499 180 905 217 200 37 chr6 126417413 126417784 -62861770 + MLT1H LTR MaLR 73 382 -167 180 0 0 0 chr6 126417784 126417804 -62861750 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2155 87 7 0 chr6 126417805 126418081 -62861473 - AluSg SINE Alu -32 278 1 905 217 200 37 chr6 126418081 126418117 -62861437 + MLT1H LTR MaLR 381 549 0 374 227 11 0 chr6 126418117 126418205 -62861349 - Charlie4a DNA MER1_type -333 175 87 189 241 0 56 chr6 126419473 126419527 -62860027 - MIR SINE MIR -66 142 92 1757 108 11 11 chr6 126421718 126421995 -62857559 - L1PB1 LINE L1 -1 6150 5874 183 167 0 0 chr6 126422540 126422582 -62856972 + (TG)n Simple_repeat Simple_repeat 1 42 0 209 303 164 8 chr6 126424161 126424283 -62855271 + L2 LINE L2 2211 2351 -963 372 325 58 82 chr6 126424480 126425107 -62854447 + L2 LINE L2 2586 3232 -40 2282 82 0 0 chr6 126425107 126425425 -62854129 + AluSg SINE Alu 1 318 0 372 325 58 82 chr6 126425425 126425458 -62854096 + L2 LINE L2 3232 3264 -8 889 171 41 24 chr6 126425469 126425639 -62853915 + MER2 DNA MER2_type 1 173 -172 2493 97 0 0 chr6 126426959 126427270 -62852284 + AluSx SINE Alu 1 311 -1 24 0 0 0 chr6 126427498 126427522 -62852032 + AT_rich Low_complexity Low_complexity 1 24 0 32 26 0 0 chr6 126428151 126428190 -62851364 + AT_rich Low_complexity Low_complexity 1 39 0 550 238 16 76 chr6 126428766 126428951 -62850603 + MER91A DNA MER1_type 23 196 0 990 239 75 4 chr6 126429443 126429669 -62849885 - MIR SINE MIR -19 243 2 1217 161 158 52 chr6 126429820 126430130 -62849424 + MER2 DNA MER2_type 2 344 0 197 283 0 19 chr6 126431983 126432036 -62847518 + MIR SINE MIR 85 136 -126 1165 14 7 7 chr6 126434162 126434306 -62845248 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 1469 156 78 23 chr6 126434315 126434572 -62844982 - AluSx SINE Alu -41 271 1 614 332 5 20 chr6 126435896 126436095 -62843459 + MER91A DNA MER1_type 1 196 0 384 249 79 69 chr6 126436116 126436305 -62843249 - Charlie8 DNA MER1_type -2172 245 55 258 225 126 9 chr6 126436740 126436851 -62842703 - L1ME4a LINE L1 -38 6083 5960 236 322 81 0 chr6 126436996 126437083 -62842471 - MIR SINE MIR -149 113 20 236 361 0 0 chr6 126437863 126437935 -62841619 - MIR SINE MIR -56 152 81 330 336 0 32 chr6 126439097 126439222 -62840332 + MIR SINE MIR 24 144 -64 284 0 0 27 chr6 126439229 126439266 -62840288 + (CA)n Simple_repeat Simple_repeat 2 37 0 1893 135 20 37 chr6 126439325 126439726 -62839828 - L1MA5 LINE L1 0 6300 5907 650 168 0 0 chr6 126439730 126439837 -62839717 - U6 snRNA snRNA 0 107 1 461 228 83 78 chr6 126440261 126440441 -62839113 + MIR SINE MIR 82 262 0 207 219 67 124 chr6 126441420 126441525 -62838029 - MER5A DNA MER1_type -21 168 70 267 240 100 0 chr6 126441849 126441949 -62837605 + MIR SINE MIR 109 218 -44 264 324 28 42 chr6 126441993 126442135 -62837419 - MIR3 SINE MIR -68 140 1 * 597 323 90 14 chr6 126442135 126442333 -62837221 - MIR SINE MIR -40 222 8 6823 34 2 0 chr6 126443500 126444331 -62835223 + L1PA7 LINE L1 5317 6152 -2 213 39 0 0 chr6 126445733 126445759 -62833795 + (TG)n Simple_repeat Simple_repeat 2 27 0 362 289 12 0 chr6 126447450 126447533 -62832021 + L2 LINE L2 3203 3286 -27 196 209 23 0 chr6 126448442 126448485 -62831069 + MIR SINE MIR 194 237 -25 279 332 117 47 chr6 126448533 126448747 -62830807 - MIR SINE MIR -9 253 25 255 329 25 0 chr6 126448746 126448825 -62830729 - MIR SINE MIR -134 128 48 * 1576 236 51 107 chr6 126448866 126449651 -62829903 + MER21B LTR ERV1 20 760 -103 255 31 0 0 chr6 126450236 126450268 -62829286 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 204 67 0 0 chr6 126450808 126450838 -62828716 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 866 221 21 79 chr6 126451657 126451897 -62827657 - MIR SINE MIR -35 227 2 552 298 84 0 chr6 126452823 126453014 -62826540 + MIR3 SINE MIR 1 207 -1 1871 126 101 16 chr6 126453109 126453302 -62826252 + MSTA LTR MaLR 5 180 -248 186 43 0 0 chr6 126453302 126453325 -62826229 + (TC)n Simple_repeat Simple_repeat 1 23 0 1871 126 101 16 chr6 126453325 126453497 -62826057 + MSTA LTR MaLR 180 401 -27 406 100 14 0 chr6 126453515 126453585 -62825969 - MER41B LTR ERV1 -82 553 483 912 192 134 7 chr6 126453924 126454331 -62825223 + Charlie1 DNA MER1_type 66 2760 -1 414 278 208 0 chr6 126454355 126454499 -62825055 - MER5A DNA MER1_type -12 177 4 460 275 126 103 chr6 126454716 126455113 -62824441 - L2 LINE L2 0 3272 2867 2146 121 7 0 chr6 126455516 126455813 -62823741 - AluSx SINE Alu -13 299 1 202 154 0 26 chr6 126457121 126457160 -62822394 + A-rich Low_complexity Low_complexity 2 39 0 22 0 0 0 chr6 126457501 126457523 -62822031 + AT_rich Low_complexity Low_complexity 1 22 0 930 162 0 0 chr6 126457531 126457673 -62821881 - FLAM_C SINE Alu -1 142 1 583 353 20 12 chr6 126460648 126460897 -62818657 - L3b LINE CR1 -53 1530 1280 289 331 109 11 chr6 126460997 126461172 -62818382 + L3b LINE CR1 1175 1366 -217 240 235 0 0 chr6 126461372 126461423 -62818131 + MER112 DNA MER1_type 182 232 -28 284 153 0 0 chr6 126461592 126461651 -62817903 - L1MC3 LINE L1 0 7785 7727 205 228 35 18 chr6 126461652 126461709 -62817845 - MER5B DNA MER1_type -117 61 4 180 340 0 0 chr6 126461709 126461758 -62817796 + L2 LINE L2 3255 3303 -10 207 219 0 0 chr6 126462847 126462888 -62816666 + (TAA)n Simple_repeat Simple_repeat 1 41 0 391 382 40 9 chr6 126463009 126463237 -62816317 - MIR SINE MIR -19 243 9 284 200 0 14 chr6 126463237 126463307 -62816247 - L1ME LINE L1 -337 5784 5716 205 326 135 0 chr6 126467136 126467225 -62812329 + L2 LINE L2 1338 1438 -1876 2319 100 7 0 chr6 126467823 126468124 -62811430 + AluSx SINE Alu 1 303 -9 29 0 0 0 chr6 126468228 126468257 -62811297 + AT_rich Low_complexity Low_complexity 1 29 0 311 186 93 0 chr6 126468613 126468699 -62810855 - MER97c DNA MER1_type? -166 924 831 2193 194 78 20 chr6 126468765 126469306 -62810248 - MER97b DNA MER1_type? -481 572 1 283 406 63 15 chr6 126469321 126469592 -62809962 + L2 LINE L2 2519 2802 -512 309 306 187 61 chr6 126469623 126469966 -62809588 + L2 LINE L2 2856 3241 -31 2228 92 0 0 chr6 126470331 126470658 -62808896 - AluSg1 SINE Alu 0 327 1 192 125 0 0 chr6 126470741 126470773 -62808781 + (GAAAA)n Simple_repeat Simple_repeat 1 32 0 240 281 93 67 chr6 126471738 126472083 -62807471 - LTR33 LTR ERVL -6 515 162 237 186 0 0 chr6 126473467 126473510 -62806044 + L2 LINE L2 3230 3272 0 381 329 129 14 chr6 126473663 126473873 -62805681 + MIR SINE MIR 23 256 -6 259 374 130 0 chr6 126473998 126474113 -62805441 + L2 LINE L2 3136 3265 -7 338 254 132 35 chr6 126474122 126474236 -62805318 - MIR3 SINE MIR -2 206 82 288 313 0 21 chr6 126476572 126476668 -62802886 + L2 LINE L2 3219 3312 -1 22 35 0 0 chr6 126477434 126477463 -62802091 + AT_rich Low_complexity Low_complexity 1 29 0 391 287 77 28 chr6 126479382 126479563 -62799991 + MIR3 SINE MIR 16 205 -3 206 307 102 55 chr6 126479592 126479719 -62799835 + MIR SINE MIR 80 212 -50 2136 101 11 0 chr6 126481717 126482024 -62797530 + AluSx SINE Alu 1 310 0 21 36 0 0 chr6 126482036 126482064 -62797490 + AT_rich Low_complexity Low_complexity 1 28 0 523 110 138 0 chr6 126482210 126482315 -62797239 + MLT1B LTR MaLR 1 106 -284 2186 122 3 7 chr6 126482328 126482631 -62796923 + AluSx SINE Alu 1 302 -10 299 159 16 32 chr6 126482663 126482726 -62796828 + MLT1B LTR MaLR 327 388 -2 2246 65 28 3 chr6 126483071 126483362 -62796192 + AluY SINE Alu 1 298 -13 4811 84 28 1 chr6 126483556 126484243 -62795311 - L1MA1 LINE L1 -4 6298 5594 225 108 0 0 chr6 126484388 126484425 -62795129 + (TA)n Simple_repeat Simple_repeat 1 37 0 344 206 22 43 chr6 126484430 126484522 -62795032 + L1MC4 LINE L1 6614 6703 -1339 725 219 37 21 chr6 126484816 126485003 -62794551 + MIR SINE MIR 72 261 -1 485 180 90 0 chr6 126485841 126485941 -62793613 - MER5A DNA MER1_type -80 109 1 21 36 0 0 chr6 126486702 126486730 -62792824 + AT_rich Low_complexity Low_complexity 1 28 0 2077 122 20 0 chr6 126487066 126487369 -62792185 + AluSq SINE Alu 1 309 -4 2364 163 39 12 chr6 126487443 126487934 -62791620 + MER41B LTR ERV1 130 466 -12 309 234 153 24 chr6 126487948 126488072 -62791482 + MIR3 SINE MIR 68 207 -1 2313 97 0 7 chr6 126489811 126490110 -62789444 - AluSg1 SINE Alu -12 297 1 540 320 82 0 chr6 126490433 126490639 -62788915 - MIR SINE MIR -19 243 21 1250 245 107 45 chr6 126541137 126541643 -62737911 + MLT1F LTR MaLR 1 537 -5 385 329 95 19 chr6 126541652 126541810 -62737744 - L2 LINE L2 -259 3054 2885 271 331 59 44 chr6 126541880 126542016 -62737538 - L2 LINE L2 -579 2735 2598 2638 32 0 6 chr6 126542578 126542889 -62736665 - AluY SINE Alu -2 309 1 3555 202 47 8 chr6 126544973 126545069 -62734485 - L1MA9 LINE L1 -38 6274 6183 216 0 0 0 chr6 126545069 126545093 -62734461 + (TG)n Simple_repeat Simple_repeat 1 24 0 3555 202 47 8 chr6 126545093 126545864 -62733690 - L1MA9 LINE L1 -129 6183 5373 335 100 0 0 chr6 126545964 126546014 -62733540 - L1MB5 LINE L1 -244 5930 5881 250 192 39 0 chr6 126547988 126548066 -62731488 - MER113 DNA MER1_type? -333 188 108 198 238 63 63 chr6 126548292 126548355 -62731199 - MIR SINE MIR -103 105 43 21 71 0 0 chr6 126548692 126548734 -62730820 + AT_rich Low_complexity Low_complexity 1 42 0 1198 235 101 21 chr6 126548960 126549347 -62730207 - L1ME3A LINE L1 -14 6156 5739 25 31 0 0 chr6 126549752 126549784 -62729770 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr6 126550283 126550306 -62729248 + AT_rich Low_complexity Low_complexity 1 23 0 1782 154 10 42 chr6 126550884 126551190 -62728364 + AluJb SINE Alu 1 296 -16 668 288 42 1 chr6 126552493 126552696 -62726858 + MIR SINE MIR 54 262 0 184 316 76 0 chr6 126553362 126553441 -62726113 - MIR SINE MIR -65 197 113 430 300 35 35 chr6 126554056 126554256 -62725298 + MIR3 SINE MIR 3 202 -6 585 77 0 0 chr6 126554906 126554984 -62724570 - MADE1 DNA Mariner -2 78 1 244 295 200 0 chr6 126556376 126556471 -62723083 + MIR3 SINE MIR 62 175 -33 22 0 0 0 chr6 126556774 126556796 -62722758 + AT_rich Low_complexity Low_complexity 1 22 0 246 174 65 11 chr6 126556863 126556955 -62722599 + (TA)n Simple_repeat Simple_repeat 1 97 0 413 225 7 134 chr6 126557019 126557161 -62722393 - L2 LINE L2 -5 3267 3144 468 274 23 43 chr6 126557174 126557362 -62722192 - L1MC4a LINE L1 -395 5783 5673 2235 105 0 45 chr6 126557633 126557947 -62721607 - AluSg SINE Alu -10 300 1 207 340 106 61 chr6 126558128 126558457 -62721097 + L2 LINE L2 2044 2387 -927 2040 112 30 0 chr6 126558465 126558636 -62720918 - AluSx SINE Alu -8 304 119 249 57 0 0 chr6 126558636 126558671 -62720883 + (TG)n Simple_repeat Simple_repeat 2 36 0 2040 112 30 0 chr6 126558671 126558794 -62720760 - AluSx SINE Alu -193 119 1 366 178 20 20 chr6 126558825 126558926 -62720628 + CT-rich Low_complexity Low_complexity 1 101 0 333 0 0 0 chr6 126559040 126559077 -62720477 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 * 762 60 0 0 chr6 126559076 126559176 -62720378 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 192 389 26 0 chr6 126559176 126559289 -62720265 + L2 LINE L2 2410 2525 -789 879 193 79 82 chr6 126560852 126561194 -62718360 - MLT1H LTR MaLR 0 549 209 3355 77 24 20 chr6 126561677 126562170 -62717384 - L1PA13 LINE L1 -11 6152 5658 1794 128 31 52 chr6 126562536 126562846 -62716708 - AluSx SINE Alu 0 304 1 365 300 57 39 chr6 126563538 126563768 -62715786 + L1ME LINE L1 5545 5778 -392 32 0 0 0 chr6 126564102 126564134 -62715420 + AT_rich Low_complexity Low_complexity 1 32 0 249 159 0 0 chr6 126566245 126566289 -62713265 + (CA)n Simple_repeat Simple_repeat 2 45 0 2262 102 10 0 chr6 126566779 126567084 -62712470 + AluSq SINE Alu 1 308 -5 21 0 0 0 chr6 126567398 126567419 -62712135 + AT_rich Low_complexity Low_complexity 1 21 0 280 369 18 42 chr6 126568172 126568340 -62711214 + L2 LINE L2 2857 3020 -252 253 234 0 0 chr6 126568465 126568512 -62711042 + L2 LINE L2 3267 3313 0 807 182 17 39 chr6 126568856 126569037 -62710517 - MER5B DNA MER1_type 0 178 2 591 219 118 5 chr6 126569112 126569299 -62710255 + L1MD2 LINE L1 5410 5617 -625 2193 165 21 78 chr6 126569302 126569787 -62709767 + LTR32 LTR ERVL 9 465 -6 2201 202 52 4 chr6 126569792 126570296 -62709258 + L1MD2 LINE L1 5621 6148 -211 585 233 42 5 chr6 126570351 126570540 -62709014 + L1MD3 LINE L1 7787 7982 -13 213 234 0 0 chr6 126570661 126570708 -62708846 + (CAATT)n Simple_repeat Simple_repeat 3 49 0 1091 89 0 0 chr6 126571142 126571277 -62708277 - AluSg/x SINE Alu -20 290 156 556 299 94 5 chr6 126571957 126572181 -62707373 - MIR SINE MIR 0 262 19 711 251 81 32 chr6 126572687 126572934 -62706620 + MIR SINE MIR 3 261 -1 253 154 0 0 chr6 126573066 126573105 -62706449 + MER8 DNA MER2_type 1 39 -200 475 191 11 0 chr6 126573128 126573222 -62706332 + MER8 DNA MER2_type 145 239 0 348 343 44 0 chr6 126573844 126573981 -62705573 - MIR SINE MIR 0 262 120 576 200 55 0 chr6 126573994 126574104 -62705450 + FRAM SINE Alu 11 126 -50 270 315 17 22 chr6 126575058 126575236 -62704318 + MER69A DNA AcHobo 1 177 0 603 271 101 0 chr6 126575411 126575599 -62703955 - MIR SINE MIR -46 216 10 1779 104 0 0 chr6 126575681 126575911 -62703643 - AluSg/x SINE Alu -11 301 72 211 267 240 0 chr6 126576057 126576132 -62703422 - MIR SINE MIR -82 126 34 405 374 57 31 chr6 126577289 126577674 -62701880 + L2 LINE L2 1988 2382 -932 1360 210 55 5 chr6 126577814 126578195 -62701359 + L1MD3 LINE L1 7583 7982 -13 248 297 11 11 chr6 126578287 126578378 -62701176 - MER5A DNA MER1_type -52 137 47 2055 133 17 0 chr6 126578543 126578837 -62700717 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr6 126578935 126578957 -62700597 + AT_rich Low_complexity Low_complexity 1 22 0 848 244 101 69 chr6 126579683 126580247 -62699307 - L2 LINE L2 -14 3299 2748 1688 164 3 40 chr6 126580406 126580705 -62698849 + AluJo SINE Alu 11 298 -14 355 359 36 22 chr6 126580709 126580985 -62698569 + L1M4 LINE L1 2676 2955 -3191 1465 144 0 0 chr6 126580989 126581191 -62698363 + AluSq SINE Alu 76 277 -36 260 27 27 0 chr6 126581202 126581239 -62698315 + (TAA)n Simple_repeat Simple_repeat 2 39 0 304 198 0 0 chr6 126581575 126581641 -62697913 - AluJ/FRAM SINE Alu -21 281 229 4169 246 85 17 chr6 126581655 126582915 -62696639 - L2 LINE L2 -607 2707 1362 1887 132 52 19 chr6 126583023 126583386 -62696168 - THE1C LTR MaLR 0 375 1 243 0 0 0 chr6 126584271 126584298 -62695256 + (TC)n Simple_repeat Simple_repeat 2 28 0 240 35 0 0 chr6 126584297 126584326 -62695228 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 403 254 85 25 chr6 126584661 126584779 -62694775 - MER63 DNA MER1_type -85 751 1 1437 206 20 67 chr6 126585079 126585667 -62693887 - MLT1E3 LTR MaLR 0 624 60 469 326 16 8 chr6 126586115 126586360 -62693194 + HAL1 LINE L1 2251 2497 -10 460 275 90 14 chr6 126587411 126587633 -62691921 - L1MA9 LINE L1 -38 6274 6036 2497 208 39 55 chr6 126588160 126588663 -62690891 - L1MB7 LINE L1 -11 6173 5664 320 43 22 0 chr6 126588663 126588709 -62690845 + (TA)n Simple_repeat Simple_repeat 2 48 0 2497 208 39 55 chr6 126588709 126588897 -62690657 - L1MB7 LINE L1 -520 5664 5493 2897 112 12 2 chr6 126588897 126589327 -62690227 + MER57B LTR ERV1 1 434 0 2497 208 39 55 chr6 126589327 126589397 -62690157 - L1MB7 LINE L1 -691 5493 5423 5339 120 10 9 chr6 126589418 126590308 -62689246 - L1PA16 LINE L1 -15 6151 5261 189 171 0 0 chr6 126590755 126590790 -62688764 + CT-rich Low_complexity Low_complexity 2 36 0 2078 100 10 10 chr6 126591063 126591353 -62688201 - AluSc SINE Alu -19 290 1 231 284 0 0 chr6 126591719 126591807 -62687747 + CT-rich Low_complexity Low_complexity 3 90 0 198 186 47 0 chr6 126592113 126592156 -62687398 + L2 LINE L2 3209 3253 -19 1865 183 98 0 chr6 126593779 126594145 -62685409 + MER93a LTR ERV1 1 402 0 239 306 139 0 chr6 126594960 126595068 -62684486 + MER91A DNA MER1_type 49 171 -25 554 235 8 38 chr6 126595395 126595527 -62684027 - MER5A DNA MER1_type -53 136 9 213 39 0 0 chr6 126595596 126595622 -62683932 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1055 176 132 60 chr6 126595626 126595876 -62683678 - AluJo SINE Alu -23 289 22 601 228 99 0 chr6 126596217 126596379 -62683175 + MER5B DNA MER1_type 1 178 0 705 179 0 32 chr6 126596477 126596633 -62682921 - MER58 DNA MER1_type 0 2420 2270 737 202 29 17 chr6 126596634 126596807 -62682747 - MER58 DNA MER1_type -2244 176 2 207 191 71 0 chr6 126598262 126598304 -62681250 - L2 LINE L2 -12 3260 3216 248 247 0 0 chr6 126598332 126598421 -62681133 - L1MC4 LINE L1 -1339 6703 6615 384 200 25 0 chr6 126598425 126598545 -62681009 + (TA)n Simple_repeat Simple_repeat 2 124 0 237 240 0 67 chr6 126599426 126599501 -62680053 + MIR SINE MIR 98 167 -95 587 176 71 51 chr6 126599632 126599914 -62679640 - LTR48 LTR ERV1 0 727 503 1296 168 195 9 chr6 126599919 126600252 -62679302 - LTR48 LTR ERV1 -390 397 3 194 333 54 0 chr6 126600513 126600606 -62678948 + L2 LINE L2 1875 1972 -1342 340 225 127 21 chr6 126600752 126600894 -62678660 + L1M LINE L1 5258 5414 -2394 287 337 37 12 chr6 126601673 126601836 -62677718 - MIR SINE MIR -95 167 1 2209 82 0 0 chr6 126602279 126602588 -62676966 - AluY SINE Alu 0 309 1 305 266 84 15 chr6 126602716 126602928 -62676626 + MER93b LTR ERV1 1 222 -212 631 192 0 0 chr6 126602950 126603054 -62676500 + FRAM SINE Alu 40 143 -33 243 0 0 0 chr6 126603054 126603081 -62676473 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 532 162 9 18 chr6 126603105 126603216 -62676338 + MER57A LTR ERV1 294 403 0 2131 71 85 0 chr6 126603386 126603667 -62675887 - AluY SINE Alu -6 305 1 24 53 0 0 chr6 126604416 126604454 -62675100 + AT_rich Low_complexity Low_complexity 1 38 0 5058 111 13 1 chr6 126605564 126606336 -62673218 + L1MA3 LINE L1 5525 6305 0 229 326 39 88 chr6 126606757 126606938 -62672616 - MIR SINE MIR -76 186 15 198 300 62 0 chr6 126607212 126607292 -62672262 + MIR3 SINE MIR 123 207 -1 206 342 125 56 chr6 126607767 126608733 -62670821 + L2 LINE L2 1073 2105 -1209 1037 181 0 12 chr6 126608806 126608977 -62670577 - AluJb SINE Alu -10 302 134 2182 106 0 39 chr6 126608977 126609288 -62670266 - AluSx SINE Alu -13 299 1 357 250 83 28 chr6 126609288 126609432 -62670122 + MIR SINE MIR 62 213 -49 229 114 71 14 chr6 126609814 126609884 -62669670 + (TA)n Simple_repeat Simple_repeat 1 74 0 188 132 0 26 chr6 126610484 126610522 -62669032 + (TA)n Simple_repeat Simple_repeat 1 37 0 515 78 39 0 chr6 126610599 126610676 -62668878 + MADE1 DNA Mariner 1 80 0 466 344 0 0 chr6 126610845 126611005 -62668549 - MIR SINE MIR -83 179 20 182 244 24 0 chr6 126612404 126612445 -62667109 - MIR SINE MIR -66 196 155 293 190 13 38 chr6 126612448 126612527 -62667027 + MER116 DNA Mariner 1 77 -3 793 206 7 0 chr6 126612546 126612722 -62666832 - FRAM SINE Alu 0 176 1 350 265 81 22 chr6 126612722 126612858 -62666696 - MIR SINE MIR -114 148 5 493 257 9 0 chr6 126613932 126614041 -62665513 - MER81 DNA DNA 0 114 5 5758 144 25 33 chr6 126614053 126615133 -62664421 - MER11C LTR ERVK 0 1071 1 269 250 131 24 chr6 126616706 126616874 -62662680 + L1MC4 LINE L1 7766 7951 -91 2134 115 0 0 chr6 126618800 126619116 -62660438 + AluSg SINE Alu 1 316 0 451 196 27 0 chr6 126619121 126619233 -62660321 + (CATATA)n Simple_repeat Simple_repeat 4 118 0 546 231 96 0 chr6 126619526 126619682 -62659872 - MIR SINE MIR -18 244 74 454 295 58 58 chr6 126620176 126620235 -62659319 - L2 LINE L2 -2 3270 3212 812 240 41 0 chr6 126620235 126620406 -62659148 - MER45A DNA AcHobo 0 178 1 454 295 58 58 chr6 126620406 126620502 -62659052 - L2 LINE L2 -59 3213 3115 542 257 175 32 chr6 126620751 126621093 -62658461 - L2 LINE L2 -383 2931 2541 23 0 0 0 chr6 126623191 126623214 -62656340 + AT_rich Low_complexity Low_complexity 1 23 0 792 351 82 24 chr6 126624094 126624750 -62654804 + L2 LINE L2 2046 2739 -575 2135 128 26 0 chr6 126624839 126625143 -62654411 - AluSx SINE Alu 0 312 1 185 412 76 8 chr6 126625254 126625373 -62654181 + L2 LINE L2 3115 3241 -31 2721 23 0 3 chr6 126625621 126625925 -62653629 - AluY SINE Alu -8 303 1 220 320 0 0 chr6 126626203 126626253 -62653301 + L2 LINE L2 3207 3256 -16 2102 120 0 7 chr6 126626596 126626887 -62652667 + AluSx SINE Alu 4 292 -20 1774 147 38 14 chr6 126626973 126627266 -62652288 + AluJo SINE Alu 3 302 -10 372 194 19 46 chr6 126627418 126627526 -62652028 - MLT1J LTR MaLR -12 499 395 394 286 43 21 chr6 126627575 126627715 -62651839 + MIR SINE MIR 118 260 -2 223 348 59 72 chr6 126627722 126627943 -62651611 - L2 LINE L2 -107 3165 2948 36 0 0 0 chr6 126629438 126629474 -62650080 + AT_rich Low_complexity Low_complexity 1 36 0 1431 188 46 13 chr6 126630106 126630479 -62649075 + Charlie1 DNA MER1_type 2343 2727 -34 3575 171 18 71 chr6 126630480 126630507 -62649047 + L1MA7 LINE L1 5441 5468 -823 2163 111 0 0 chr6 126630507 126630796 -62648758 - AluSg1 SINE Alu -5 304 16 3575 171 18 71 chr6 126630796 126631604 -62647950 + L1MA7 LINE L1 5468 6232 -59 345 135 95 0 chr6 126631626 126631700 -62647854 + L1MC4 LINE L1 7961 8041 -1 958 124 14 0 chr6 126631848 126631993 -62647561 + AluSg/x SINE Alu 157 303 -9 315 211 40 0 chr6 126632284 126632360 -62647194 + MER94 DNA DNA 8 86 -48 2008 90 54 4 chr6 126633205 126633484 -62646070 + AluSg SINE Alu 1 293 -17 289 333 29 0 chr6 126633831 126633933 -62645621 + L2 LINE L2 3200 3304 -9 238 200 18 45 chr6 126634977 126635087 -62644467 + (TTTA)n Simple_repeat Simple_repeat 1 107 0 180 271 43 0 chr6 126636190 126636260 -62643294 + MIR SINE MIR 78 150 -112 5110 152 26 12 chr6 126637197 126638514 -62641040 + L1P4 LINE L1 4286 5614 -554 291 54 0 0 chr6 126638522 126638559 -62640995 + (A)n Simple_repeat Simple_repeat 1 37 0 257 281 39 72 chr6 126639012 126639072 -62640482 + MLT1J LTR MaLR 358 418 -93 455 157 11 0 chr6 126639072 126639161 -62640393 + L1PA13 LINE L1 6070 6159 -4 777 134 28 0 chr6 126639171 126639313 -62640241 + L1MA6 LINE L1 6155 6300 0 257 281 39 72 chr6 126639313 126639394 -62640160 + MLT1J LTR MaLR 427 505 -6 587 179 161 39 chr6 126639604 126639889 -62639665 - L1MC5 LINE L1 -36 7925 7606 21 36 0 0 chr6 126640872 126640900 -62638654 + AT_rich Low_complexity Low_complexity 1 28 0 1759 77 13 8 chr6 126640990 126641225 -62638329 - AluY SINE Alu -49 262 27 234 35 0 0 chr6 126642178 126642207 -62637347 + LTR6A LTR ERV1 73 101 -463 2144 129 3 13 chr6 126642849 126643159 -62636395 - AluSx SINE Alu -5 307 1 3941 137 6 8 chr6 126643724 126643857 -62635697 - MER41B LTR ERV1 0 635 503 2435 60 3 25 chr6 126643857 126644172 -62635382 + AluY SINE Alu 1 308 -3 3941 137 6 8 chr6 126644172 126644672 -62634882 - MER41B LTR ERV1 -132 503 3 2430 162 63 86 chr6 126644891 126645458 -62634096 + MLT2B3 LTR ERVL 1 554 0 603 274 18 0 chr6 126646502 126646670 -62632884 - MIR SINE MIR -1 261 91 447 221 12 128 chr6 126648506 126648678 -62630876 - MER63 DNA MER1_type -284 778 1 5031 148 21 31 chr6 126649464 126649534 -62630020 + L1MA4A LINE L1 5296 5365 -938 1894 151 0 17 chr6 126649534 126649857 -62629697 + AluJo SINE Alu 1 318 0 5031 148 21 31 chr6 126649857 126650802 -62628752 + L1MA4A LINE L1 5365 6303 0 381 251 74 19 chr6 126653041 126653256 -62626298 - L1MC5 LINE L1 -208 7753 7527 309 299 114 34 chr6 126653628 126653892 -62625662 + L1ME LINE L1 4485 4769 -1377 30 45 0 0 chr6 126654412 126654456 -62625098 + AT_rich Low_complexity Low_complexity 1 44 0 315 299 75 38 chr6 126654495 126654733 -62624821 + L1ME LINE L1 5357 5602 -568 24 0 0 0 chr6 126656382 126656406 -62623148 + AT_rich Low_complexity Low_complexity 1 24 0 256 289 61 18 chr6 126656716 126656830 -62622724 + L1MC4a LINE L1 6683 6801 -1007 324 70 0 0 chr6 126657568 126657611 -62621943 + (TG)n Simple_repeat Simple_repeat 1 43 0 401 280 42 53 chr6 126659507 126659696 -62619858 - MER5A DNA MER1_type 0 189 3 729 300 83 6 chr6 126659915 126660252 -62619302 + L2 LINE L2 2899 3261 -52 516 317 58 11 chr6 126660635 126661105 -62618449 - LTR33A LTR ERVL -2 521 9 24 0 0 0 chr6 126661356 126661380 -62618174 + AT_rich Low_complexity Low_complexity 1 24 0 778 134 25 0 chr6 126662386 126662505 -62617049 - LTR12 LTR ERV1 -234 480 359 316 206 0 0 chr6 126662505 126662578 -62616976 - LTR30 LTR ERV1 -98 624 552 1063 124 5 91 chr6 126662579 126662788 -62616766 - LTR12 LTR ERV1 -430 284 94 2287 35 43 3 chr6 126663722 126664004 -62615550 - AluY SINE Alu -18 293 1 250 237 88 18 chr6 126664140 126664254 -62615300 - L1ME3A LINE L1 0 6170 6049 1461 198 74 49 chr6 126664259 126664704 -62614850 - L1ME3A LINE L1 -237 5933 5478 536 272 127 3 chr6 126664760 126665131 -62614423 - L1ME3A LINE L1 -805 5341 4925 1180 166 58 42 chr6 126666116 126666429 -62613125 - L1MA9 LINE L1 0 6312 5995 756 178 46 0 chr6 126666433 126666585 -62612969 + L1MA9 LINE L1 5842 6000 -312 188 75 0 75 chr6 126666676 126666716 -62612838 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 782 188 8 0 chr6 126666721 126666854 -62612700 - AluJb SINE Alu -42 270 137 2109 198 78 18 chr6 126667606 126668525 -62611029 - MER45B DNA AcHobo -2 1038 1 343 212 106 71 chr6 126668710 126668823 -62610731 + MER5B DNA MER1_type 61 177 -1 338 232 53 42 chr6 126668848 126668943 -62610611 + MER5A DNA MER1_type 9 104 -85 993 213 67 61 chr6 126669124 126669618 -62609936 + Charlie2 DNA MER1_type 2269 2765 -97 468 203 142 0 chr6 126669641 126669789 -62609765 + Charlie2 DNA MER1_type 2694 2862 0 435 287 98 24 chr6 126670325 126670694 -62608860 - HAL1 LINE L1 -7 2500 2105 336 273 0 91 chr6 126670693 126670790 -62608764 - HAL1 LINE L1 -917 1590 1514 * 11053 124 27 5 chr6 126670790 126673288 -62606266 + L1PA10 LINE L1 3649 6168 0 336 273 0 91 chr6 126673288 126673366 -62606188 - HAL1 LINE L1 -993 1514 1431 356 319 62 6 chr6 126673369 126673529 -62606025 - HAL1 LINE L1 -1291 1216 1048 871 253 116 0 chr6 126673578 126673803 -62605751 + MIR SINE MIR 2 252 -10 428 270 42 77 chr6 126673885 126674144 -62605410 - HAL1 LINE L1 -1601 906 657 658 333 98 76 chr6 126674145 126674740 -62604814 - HAL1 LINE L1 -1896 611 4 234 216 0 68 chr6 126675648 126675736 -62603818 - MLT1K LTR MaLR -315 273 192 203 186 0 34 chr6 126678493 126678552 -62601002 + GA-rich Low_complexity Low_complexity 2 58 0 22 0 0 0 chr6 126678588 126678610 -62600944 + AT_rich Low_complexity Low_complexity 1 22 0 3496 178 27 21 chr6 126679703 126680432 -62599122 - L1MB5 LINE L1 0 6174 5441 3388 138 74 10 chr6 126680457 126681678 -62597876 - L1MA5 LINE L1 0 6300 4950 467 276 88 57 chr6 126681678 126681906 -62597648 + L2 LINE L2 2435 2669 -645 787 288 135 25 chr6 126681967 126682404 -62597150 + L2 LINE L2 2829 3313 0 504 305 97 13 chr6 126683102 126683328 -62596226 + MIR SINE MIR 18 262 0 1278 95 0 6 chr6 126683707 126683875 -62595679 - AluY SINE Alu -144 167 1 501 204 51 15 chr6 126683954 126684091 -62595463 + L1ME4a LINE L1 5977 6118 -3 1264 176 170 3 chr6 126684420 126684726 -62594828 + MLT2C1 LTR ERVL 1 357 -40 2488 198 31 48 chr6 126684857 126685502 -62594052 - LTR27 LTR ERV1 0 636 3 650 173 8 0 chr6 126686186 126686313 -62593241 - L1MB2 LINE L1 0 6171 6044 1367 203 62 48 chr6 126686431 126686850 -62592704 - MLT1D LTR MaLR 0 505 81 8386 156 12 19 chr6 126686854 126689247 -62590307 - L1PA12 LINE L1 0 6168 3774 207 0 0 0 chr6 126690764 126690787 -62588767 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 287 284 28 18 chr6 126691197 126691306 -62588248 + MIR SINE MIR 2 111 -151 287 300 0 0 chr6 126691572 126691652 -62587902 - MER63 DNA MER1_type -20 1040 961 * 408 172 182 0 chr6 126691645 126691744 -62587810 - MER63 DNA MER1_type -319 743 1 368 298 44 0 chr6 126692298 126692412 -62587142 - L3b LINE CR1 -187 1396 1278 335 263 120 34 chr6 126693106 126693294 -62586260 + MIR SINE MIR 4 207 -55 396 229 48 0 chr6 126693304 126693409 -62586145 + MER94 DNA DNA 4 113 -21 1148 142 57 53 chr6 126693851 126694133 -62585421 + MER33 DNA MER1_type 42 324 0 2173 95 3 0 chr6 126694273 126694568 -62584986 + AluY SINE Alu 11 306 -5 366 23 0 0 chr6 126695323 126695366 -62584188 + (CA)n Simple_repeat Simple_repeat 2 44 0 284 206 0 0 chr6 126695497 126695560 -62583994 + L1MA5 LINE L1 6238 6300 0 365 356 68 0 chr6 126695655 126695787 -62583767 + L1MC4a LINE L1 6167 6307 -1501 248 163 0 0 chr6 126695826 126695869 -62583685 + L1MC4a LINE L1 6536 6578 -1230 2097 224 125 84 chr6 126695914 126697187 -62582367 + L1MC4 LINE L1 6716 8040 -2 2219 117 10 3 chr6 126697247 126697556 -62581998 + AluSx SINE Alu 1 311 -1 196 239 0 22 chr6 126697678 126697724 -62581830 + MIR SINE MIR 119 163 -99 319 233 54 54 chr6 126697725 126697854 -62581700 + MLT1J LTR MaLR 1 129 -382 280 314 39 10 chr6 126698205 126698307 -62581247 + MIR SINE MIR 158 262 0 30 59 0 0 chr6 126698761 126698812 -62580742 + AT_rich Low_complexity Low_complexity 1 51 0 524 271 46 46 chr6 126699373 126699591 -62579963 - LTR33 LTR ERVL 0 521 304 538 278 86 0 chr6 126699655 126699817 -62579737 - LTR33 LTR ERVL -345 176 1 264 346 33 3 chr6 126699817 126699925 -62579629 - MIR SINE MIR -80 128 20 1689 167 3 24 chr6 126701028 126701315 -62578239 + AluJo SINE Alu 1 281 -31 514 278 263 5 chr6 126701539 126701733 -62577821 + MIR SINE MIR 4 247 -15 390 254 26 44 chr6 126702006 126702134 -62577420 + MIR SINE MIR 30 145 -63 1012 55 103 14 chr6 126703084 126703230 -62576324 - L1PA5 LINE L1 -2 6152 5994 809 175 7 7 chr6 126703510 126703653 -62575901 + FRAM SINE Alu 27 169 -7 27 29 0 0 chr6 126703678 126703712 -62575842 + AT_rich Low_complexity Low_complexity 1 34 0 1193 85 58 5 chr6 126703770 126703958 -62575596 - L1MA3 LINE L1 -9 6296 6099 11769 180 19 3 chr6 126703958 126706296 -62573258 - L1 LINE L1 -981 6584 4210 484 223 71 0 chr6 126706297 126706409 -62573145 - AluSq/x SINE Alu -192 120 1 1122 102 11 0 chr6 126706411 126706587 -62572967 - L1M1 LINE L1 -5038 2527 2350 28373 131 19 62 chr6 126706600 126712014 -62567540 + L1PA7 LINE L1 12 5195 -951 3313 36 0 0 chr6 126712014 126712407 -62567147 + LTR10C LTR ERV1 1 393 -198 4947 75 2 0 chr6 126712407 126713047 -62566507 + L1PA7 LINE L1 5500 6140 -14 1728 210 50 13 chr6 126714048 126714444 -62565110 + MLT1C LTR MaLR 4 414 -53 5112 123 7 8 chr6 126714454 126715209 -62564345 - L1 LINE L1 -5205 2360 1607 21 36 0 0 chr6 126715259 126715287 -62564267 + AT_rich Low_complexity Low_complexity 1 28 0 205 264 207 16 chr6 126715626 126715747 -62563807 - MIR SINE MIR -117 145 2 377 323 7 0 chr6 126715993 126716148 -62563406 + L1MC4a LINE L1 5713 5868 -1940 2856 216 44 30 chr6 126716411 126717135 -62562419 + L1ME1 LINE L1 5429 6162 -4 246 196 0 0 chr6 126717249 126717295 -62562259 + L1M1 LINE L1 1607 1652 -5913 263 368 108 5 chr6 126718928 126719132 -62560422 - MIR SINE MIR -4 258 34 570 293 157 10 chr6 126719239 126719437 -62560117 + MIR SINE MIR 3 229 -33 2111 269 86 33 chr6 126719845 126720810 -62558744 + L2 LINE L2 2092 3169 -144 816 239 133 20 chr6 126720810 126721111 -62558443 - MER46C DNA MER2_type -3 335 1 2111 269 86 33 chr6 126721111 126721265 -62558289 + L2 LINE L2 3169 3313 0 316 322 68 90 chr6 126722001 126722355 -62557199 - L2 LINE L2 -339 2975 2630 223 191 0 21 chr6 126723590 126723637 -62555917 + GA-rich Low_complexity Low_complexity 2 47 0 312 188 0 58 chr6 126723995 126724064 -62555490 + MIR3 SINE MIR 133 197 -11 1714 188 3 10 chr6 126726113 126726416 -62553138 + AluJo SINE Alu 1 301 -11 26 0 0 0 chr6 126726909 126726935 -62552619 + AT_rich Low_complexity Low_complexity 1 26 0 205 271 71 14 chr6 126727620 126727690 -62551864 - MER5A DNA MER1_type -78 111 38 230 116 23 0 chr6 126729419 126729462 -62550092 + A-rich Low_complexity Low_complexity 3 46 0 1452 144 107 0 chr6 126729881 126730124 -62549430 + AluJb SINE Alu 5 273 -39 2022 141 3 3 chr6 126730251 126730549 -62549005 - AluSx SINE Alu -14 298 1 323 225 18 63 chr6 126730880 126730991 -62548563 - L1ME4a LINE L1 -152 6467 6362 872 223 154 4 chr6 126731018 126731291 -62548263 - MER5C DNA MER1_type -4 320 7 323 289 167 17 chr6 126731312 126731492 -62548062 - L1ME4a LINE L1 -1993 6313 6107 282 211 28 0 chr6 126731508 126731579 -62547975 - Charlie2 DNA MER1_type 0 2862 2790 4470 191 68 60 chr6 126731627 126732178 -62547376 + L1MC3 LINE L1 6587 7132 -653 237 226 0 0 chr6 126732178 126732231 -62547323 + MLT1F1 LTR MaLR 73 125 -442 4470 191 68 60 chr6 126732231 126732510 -62547044 + L1MC3 LINE L1 7132 7407 -378 222 37 0 0 chr6 126732510 126732537 -62547017 + (CAA)n Simple_repeat Simple_repeat 2 28 0 4470 191 68 60 chr6 126732537 126732842 -62546712 + L1MC3 LINE L1 7407 7785 0 3889 255 45 68 chr6 126732911 126734400 -62545154 - L1MEc LINE L1 -1288 5356 3834 1510 221 14 0 chr6 126734400 126734690 -62544864 - AluJb SINE Alu -18 294 1 3889 255 45 68 chr6 126734690 126735817 -62543737 - L1MEc LINE L1 -2810 3834 2923 2081 155 0 6 chr6 126735817 126736178 -62543376 - L1MA5 LINE L1 0 6300 5942 3889 255 45 68 chr6 126736178 126736556 -62542998 - L1MEc LINE L1 -3721 2923 2538 1008 158 31 47 chr6 126736557 126736811 -62542743 - L1MB7 LINE L1 -1 6183 5934 1830 232 15 137 chr6 126736813 126737734 -62541820 - L1 LINE L1 -2047 4099 3291 195 186 0 0 chr6 126738138 126738181 -62541373 + (TG)n Simple_repeat Simple_repeat 1 43 0 268 335 22 28 chr6 126738217 126738396 -62541158 - L1MEc LINE L1 -6352 190 13 550 303 106 46 chr6 126738408 126739164 -62540390 - L1ME4a LINE L1 -5 6116 5316 748 272 107 0 chr6 126739324 126739548 -62540006 + MIR SINE MIR 15 262 0 422 271 76 21 chr6 126739977 126740121 -62539433 + MIR SINE MIR 110 261 -1 508 277 184 56 chr6 126740173 126740585 -62538969 + MLT1H LTR MaLR 85 549 0 195 42 0 0 chr6 126742709 126742733 -62536821 + (CATA)n Simple_repeat Simple_repeat 4 27 0 620 276 82 12 chr6 126743150 126743393 -62536161 + MIR SINE MIR 3 262 0 394 327 71 9 chr6 126743704 126743915 -62535639 + LTR33A LTR ERVL 59 282 -241 334 250 87 63 chr6 126743979 126744231 -62535323 + LTR33A LTR ERVL 263 520 -3 1651 213 58 6 chr6 126744699 126745046 -62534508 + MLT1A1 LTR MaLR 1 365 0 2197 184 73 2 chr6 126745984 126746447 -62533107 - L1MC2 LINE L1 -8 6336 5841 659 192 145 37 chr6 126746907 126747121 -62532433 + MLT1B LTR MaLR 1 237 -153 1280 180 20 28 chr6 126747123 126747378 -62532176 - MER57A-int LTR ERV1 -5 7532 7280 602 147 22 66 chr6 126747389 126747525 -62532029 - LTR54B LTR ERV1 -366 132 3 2682 189 16 10 chr6 126747549 126748052 -62531502 - MER57A-int LTR ERV1 -396 7141 6636 1056 115 0 82 chr6 126748052 126748260 -62531294 - MER57A-int LTR ERV1 -1743 5794 5604 2631 157 0 5 chr6 126748302 126748734 -62530820 - MER57A-int LTR ERV1 -1936 5601 5172 739 189 54 39 chr6 126748738 126749194 -62530360 - MER57A-int LTR ERV1 -1997 2883 1707 2631 121 0 0 chr6 126749201 126749565 -62529989 + THE1B LTR MaLR 1 364 0 467 209 61 0 chr6 126749834 126749949 -62529605 - MER57A-int LTR ERV1 -2991 3340 3219 918 115 112 74 chr6 126750055 126750270 -62529284 + MSTA LTR MaLR 154 428 0 2558 213 12 8 chr6 126750270 126750759 -62528795 - MER57A-int LTR ERV1 -7045 492 2 1889 159 102 27 chr6 126750765 126751136 -62528418 - MER57A LTR ERV1 -4 399 1 724 175 6 6 chr6 126751260 126751426 -62528128 + CT-rich Low_complexity Low_complexity 4 169 0 294 192 0 0 chr6 126751677 126751729 -62527825 - MLT1I LTR MaLR 0 409 358 265 367 44 11 chr6 126751872 126752052 -62527502 - MLT1I LTR MaLR -184 225 40 2121 156 19 24 chr6 126752324 126752696 -62526858 + MER57A LTR ERV1 1 370 -33 7596 28 0 3 chr6 126752716 126753759 -62525795 - L1PA3 LINE L1 0 6155 5114 561 108 0 0 chr6 126753767 126753850 -62525704 - LTR23 LTR ERV1 -194 243 161 705 133 55 0 chr6 126753939 126754067 -62525487 - LTR23 LTR ERV1 -295 142 8 514 269 15 8 chr6 126754071 126754205 -62525349 + MER5B DNA MER1_type 44 178 0 189 444 0 33 chr6 126754350 126754440 -62525114 + L2 LINE L2 3123 3209 -63 516 307 29 29 chr6 126754591 126754796 -62524758 + MIR SINE MIR 20 224 -38 238 175 0 0 chr6 126755342 126755382 -62524172 + HSMAR2 DNA Mariner 5 44 -1258 1347 137 13 0 chr6 126755382 126755608 -62523946 + HSMAR2 DNA Mariner 1069 1297 -5 714 297 14 5 chr6 126756144 126756366 -62523188 + MER58A DNA MER1_type 1 224 0 244 264 0 0 chr6 126756628 126756681 -62522873 + L2 LINE L2 3217 3269 -3 276 296 14 0 chr6 126758043 126758114 -62521440 - MER81 DNA DNA -1 113 42 1548 227 91 42 chr6 126758199 126758740 -62520814 - L1MC4 LINE L1 -97 7945 7379 1265 206 86 34 chr6 126759796 126760122 -62519432 + MER2 DNA MER2_type 1 343 -2 490 210 20 0 chr6 126762205 126762305 -62517249 + U13 snRNA snRNA 1 102 -2 272 280 102 8 chr6 126762768 126762886 -62516668 - MIR SINE MIR -53 209 81 203 286 117 0 chr6 126763132 126763209 -62516345 + L2 LINE L2 3159 3244 -69 189 0 0 0 chr6 126763541 126763562 -62515992 + (TG)n Simple_repeat Simple_repeat 2 22 0 312 27 0 0 chr6 126764085 126764122 -62515432 + (TG)n Simple_repeat Simple_repeat 2 38 0 1043 147 121 11 chr6 126764317 126764507 -62515047 + AluJo SINE Alu 82 292 -20 25 31 0 0 chr6 126764548 126764580 -62514974 + AT_rich Low_complexity Low_complexity 1 32 0 2179 138 27 11 chr6 126765282 126765651 -62513903 + THE1C LTR MaLR 1 375 0 1025 131 6 0 chr6 126765711 126765887 -62513667 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 230 143 0 0 chr6 126766065 126766107 -62513447 - L1MA6 LINE L1 -5 6295 6254 * 281 200 0 14 chr6 126766101 126766171 -62513383 + L1MA6 LINE L1 5974 6042 -258 535 306 26 83 chr6 126766320 126766813 -62512741 + MLT1J LTR MaLR 1 465 -46 213 224 209 15 chr6 126766829 126766896 -62512658 - MIR3 SINE MIR -25 183 104 229 212 61 30 chr6 126767940 126768006 -62511548 - L2 LINE L2 -8 3264 3197 1664 120 0 54 chr6 126769767 126770043 -62509511 - AluSx SINE Alu -16 296 36 292 277 57 21 chr6 126770097 126770238 -62509316 - MER103 DNA DNA -1 165 20 351 309 107 12 chr6 126771277 126771445 -62508109 + MIR SINE MIR 2 185 -77 329 258 62 0 chr6 126772901 126772998 -62506556 + MLT1J2 LTR MaLR 67 169 -281 234 191 0 0 chr6 126773019 126773061 -62506493 + MLT1J1 LTR MaLR 237 278 -168 2702 16 0 3 chr6 126775195 126775502 -62504052 + AluY SINE Alu 1 306 -5 2168 112 0 7 chr6 126776190 126776493 -62503061 + AluSg SINE Alu 1 301 -9 699 189 43 0 chr6 126776725 126776805 -62502749 + Charlie1 DNA MER1_type 2591 2666 -95 233 57 29 0 chr6 126776805 126776840 -62502714 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 699 189 43 0 chr6 126776840 126776923 -62502631 + Charlie1 DNA MER1_type 2666 2761 0 362 127 0 0 chr6 126777328 126777391 -62502163 + L1MA4 LINE L1 6231 6293 -7 180 0 0 0 chr6 126777638 126777658 -62501896 + (TTTAA)n Simple_repeat Simple_repeat 2 21 0 962 222 135 12 chr6 126778107 126778441 -62501113 + L1MC4a LINE L1 7434 7808 0 783 308 18 0 chr6 126778507 126778728 -62500826 + MIR SINE MIR 2 226 -36 231 176 59 0 chr6 126779660 126779711 -62499843 - LTR33A LTR ERVL -8 515 462 449 290 148 0 chr6 126779886 126780041 -62499513 - LTR33A LTR ERVL -345 178 1 313 335 28 50 chr6 126780089 126780271 -62499283 - MIR SINE MIR -20 242 65 257 316 191 15 chr6 126780356 126780492 -62499062 - MIR3 SINE MIR -6 202 43 225 309 102 59 chr6 126780649 126780885 -62498669 - L2 LINE L2 -1900 1414 1169 1374 156 127 7 chr6 126781172 126781455 -62498099 + MER33 DNA MER1_type 8 324 0 185 164 0 148 chr6 126781860 126781921 -62497633 + L2 LINE L2 2729 2780 -534 3766 192 67 17 chr6 126782036 126783298 -62496256 + L1MB2 LINE L1 4848 6171 0 184 304 32 48 chr6 126785101 126785226 -62494328 - L2 LINE L2 -2652 662 540 365 301 75 16 chr6 126786133 126786319 -62493235 + MIR SINE MIR 2 198 -64 389 291 8 82 chr6 126786419 126786553 -62493001 - L2 LINE L2 0 3272 3149 23 33 0 0 chr6 126786807 126786837 -62492717 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 126787657 126787679 -62491875 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr6 126788173 126788208 -62491346 + AT_rich Low_complexity Low_complexity 1 35 0 32 26 0 0 chr6 126789416 126789455 -62490099 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 126791212 126791233 -62488321 + AT_rich Low_complexity Low_complexity 1 21 0 215 266 75 32 chr6 126791388 126791482 -62488072 - MIR SINE MIR -81 181 84 30 45 0 0 chr6 126791757 126791801 -62487753 + AT_rich Low_complexity Low_complexity 1 44 0 2773 205 78 8 chr6 126791851 126792512 -62487042 - L1MCa LINE L1 -3196 3230 2617 1751 164 0 0 chr6 126792512 126792801 -62486753 - AluSx SINE Alu 0 303 15 2773 205 78 8 chr6 126792801 126793456 -62486098 - L1MCa LINE L1 -3809 2617 1823 212 77 26 0 chr6 126793458 126793497 -62486057 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 438 174 94 61 chr6 126793499 126793686 -62485868 - MER31-int LTR ERV1 -3387 2944 884 231 203 0 0 chr6 126793732 126793796 -62485758 + T-rich Low_complexity Low_complexity 1 64 0 5744 25 5 9 chr6 126793802 126794472 -62485082 - SVA Other Other 0 1386 720 5520 153 49 73 chr6 126794574 126795873 -62483681 - L1MCa LINE L1 -4216 2211 483 21 0 0 0 chr6 126796466 126796487 -62483067 + AT_rich Low_complexity Low_complexity 1 21 0 268 326 0 22 chr6 126796812 126796947 -62482607 + CT-rich Low_complexity Low_complexity 3 134 0 390 286 116 22 chr6 126797012 126797448 -62482106 - L1MC4 LINE L1 -554 7488 7009 461 299 7 27 chr6 126797581 126797728 -62481826 + L2 LINE L2 1275 1418 -1896 556 282 59 15 chr6 126797738 126797940 -62481614 - L1MC4 LINE L1 -1071 6971 6761 34 55 0 0 chr6 126797940 126797995 -62481559 + AT_rich Low_complexity Low_complexity 1 55 0 705 177 16 4 chr6 126798023 126798297 -62481257 + L1MB8 LINE L1 5798 6168 -10 32 0 0 0 chr6 126798646 126798678 -62480876 + AT_rich Low_complexity Low_complexity 1 32 0 1415 287 112 14 chr6 126798965 126799975 -62479579 - L2 LINE L2 -2 3311 2118 1534 279 38 8 chr6 126799976 126800471 -62479083 - L2 LINE L2 -1801 1513 1004 333 280 39 50 chr6 126800634 126800698 -62478856 - MIR SINE MIR -53 209 146 610 290 65 25 chr6 126800698 126801022 -62478532 + MER46C DNA MER2_type 1 337 -1 333 280 39 50 chr6 126801022 126801139 -62478415 - MIR SINE MIR -116 146 30 721 302 20 16 chr6 126801582 126801830 -62477724 - MIR SINE MIR -1 261 13 2135 171 15 0 chr6 126803185 126803577 -62475977 - MER57A LTR ERV1 -5 398 1 537 213 46 37 chr6 126803761 126804174 -62475380 - MER57A-int LTR ERV1 -2970 2888 1548 335 152 177 0 chr6 126804429 126804508 -62475046 - MER57A-int LTR ERV1 -2991 3340 3248 327 213 32 21 chr6 126804677 126804771 -62474783 - MER57A-int LTR ERV1 -3681 1190 1096 303 250 0 0 chr6 126804971 126805047 -62474507 - MER34C LTR ERV1 -355 230 155 4829 153 20 10 chr6 126805287 126806120 -62473434 - MER57A-int LTR ERV1 -6695 842 1 2195 166 18 2 chr6 126806120 126806517 -62473037 - MER57A LTR ERV1 0 403 1 1167 265 49 87 chr6 126806517 126807170 -62472384 - MER21B LTR ERV1 -212 651 24 1791 176 135 123 chr6 126807826 126808544 -62471010 + LTR8A LTR ERV1 1 727 0 1760 87 13 0 chr6 126810559 126810788 -62468766 + AluSq SINE Alu 73 304 -9 21 0 0 0 chr6 126811134 126811155 -62468399 + AT_rich Low_complexity Low_complexity 1 21 0 258 207 12 37 chr6 126812207 126812289 -62467265 + MLT1L LTR MaLR 173 252 -363 205 246 35 0 chr6 126812937 126812994 -62466560 + L2 LINE L2 3255 3313 0 6116 41 1 7 chr6 126813129 126813844 -62465710 - SVA Other Other 0 1386 676 7089 49 5 37 chr6 126813944 126815442 -62464112 - SVA Other Other -875 1372 1 329 331 23 23 chr6 126817420 126817550 -62462004 + MER5B DNA MER1_type 44 173 -5 318 26 0 0 chr6 126817633 126817672 -62461882 + (CA)n Simple_repeat Simple_repeat 2 40 0 270 103 77 0 chr6 126817678 126817756 -62461798 + (TA)n Simple_repeat Simple_repeat 2 85 0 502 133 22 144 chr6 126818352 126821879 -62457675 + MER53 DNA DNA 5 162 -27 21425 30 1 0 chr6 126818506 126821854 -62457700 - L1PA3 LINE L1 -3 6152 2804 483 128 12 116 chr6 126821854 126821901 -62457653 - MER53 DNA DNA -124 65 15 4080 115 2 10 chr6 126821907 126822274 -62457280 - L1PA13 LINE L1 -11 6152 5791 279 0 0 0 chr6 126822274 126822305 -62457249 + (TATG)n Simple_repeat Simple_repeat 2 32 0 4080 115 2 10 chr6 126822305 126822555 -62456999 - L1PA13 LINE L1 -372 5791 5540 565 197 250 13 chr6 126822655 126822807 -62456747 + MER5A DNA MER1_type 1 188 -1 1508 161 76 34 chr6 126823228 126823519 -62456035 - AluJo SINE Alu -9 303 1 216 149 0 0 chr6 126823698 126823745 -62455809 + (T)n Simple_repeat Simple_repeat 1 47 0 29263 107 6 38 chr6 126827158 126832277 -62447277 + L1PA7 LINE L1 1 5281 -1188 1986 138 0 3 chr6 126832277 126832599 -62446955 + AluSc SINE Alu 1 321 0 29263 107 6 38 chr6 126832599 126833378 -62446176 + L1PA7 LINE L1 5281 5775 -694 2359 92 0 3 chr6 126833378 126833682 -62445872 + AluSc SINE Alu 1 303 -6 29263 107 6 38 chr6 126833682 126834356 -62445198 + L1PA7 LINE L1 5775 6469 0 1819 197 0 0 chr6 126835426 126835726 -62443828 + AluSx SINE Alu 1 300 -12 284 206 125 29 chr6 126836082 126836218 -62443336 - MER113 DNA MER1_type? -372 149 1 460 261 50 44 chr6 126836235 126836429 -62443125 + MIR SINE MIR 8 214 -48 8233 86 9 0 chr6 126836821 126838734 -62440820 - L1PA6 LINE L1 0 6154 4231 9120 66 1 0 chr6 126838734 126839989 -62439565 + L1PA6 LINE L1 2974 4229 -1917 2262 104 0 3 chr6 126840279 126840576 -62438978 + AluSc SINE Alu 1 296 -13 2362 204 16 25 chr6 126841069 126841715 -62437839 - L1M4 LINE L1 -1378 4768 4129 416 289 77 51 chr6 126841715 126841950 -62437604 - MLT1I LTR MaLR -70 339 99 2199 95 0 51 chr6 126842086 126842402 -62437152 - AluY SINE Alu -11 300 1 273 57 0 0 chr6 126842402 126842437 -62437117 + (TTA)n Simple_repeat Simple_repeat 1 35 0 275 352 42 36 chr6 126842438 126842745 -62436809 + L2 LINE L2 1082 1390 -1924 447 247 82 27 chr6 126843362 126843508 -62436046 - MIR SINE MIR -3 259 106 2519 200 70 2 chr6 126844128 126844159 -62435395 - MLT2B3 LTR ERVL -4 550 523 619 12 25 0 chr6 126844159 126844239 -62435315 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 2519 200 70 2 chr6 126844239 126844722 -62434832 - MLT2B3 LTR ERVL -31 523 1 259 250 28 0 chr6 126844947 126845019 -62434535 - MLT1K LTR MaLR -4 584 511 817 283 101 61 chr6 126845413 126845918 -62433636 + L2 LINE L2 1949 2473 -841 371 303 46 25 chr6 126845953 126846234 -62433320 - HAL1 LINE L1 -999 1508 1222 22 0 0 0 chr6 126846261 126846283 -62433271 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr6 126848108 126848133 -62431421 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 287 257 0 122 chr6 126848317 126848465 -62431089 - L2 LINE L2 -209 3063 2934 202 304 71 0 chr6 126849648 126849704 -62429850 - L2 LINE L2 -67 3205 3146 310 206 32 0 chr6 126850029 126850092 -62429462 + L3 LINE CR1 656 720 -857 354 324 19 61 chr6 126850774 126850987 -62428567 + L3 LINE CR1 1064 1267 -310 2872 132 11 116 chr6 126851408 126852054 -62427500 - MER50 LTR ERV1 -156 578 1 213 329 165 0 chr6 126852858 126852937 -62426617 - L2 LINE L2 -23 3290 3199 276 289 0 0 chr6 126855065 126855141 -62424413 + L1M4 LINE L1 3741 3816 -2330 578 193 37 7 chr6 126855154 126855289 -62424265 + Charlie1 DNA MER1_type 104 242 -2519 374 175 10 21 chr6 126855272 126855369 -62424185 + Charlie1 DNA MER1_type 2622 2717 -44 * 22 35 0 0 chr6 126855508 126855537 -62424017 + AT_rich Low_complexity Low_complexity 1 29 0 807 177 75 5 chr6 126855629 126855815 -62423739 - L1MC3 LINE L1 -1 7784 7586 764 220 11 5 chr6 126855813 126855999 -62423555 + L1MC3 LINE L1 7301 7487 -298 * 835 159 29 12 chr6 126856006 126856176 -62423378 - L1MC3 LINE L1 -202 7583 7411 798 243 94 25 chr6 126856186 126856462 -62423092 - L1MC3 LINE L1 -491 7294 7000 862 271 86 27 chr6 126856462 126856835 -62422719 + MSTD LTR MaLR 1 395 -1 969 177 53 90 chr6 126856835 126857134 -62422420 - L1MC3 LINE L1 -782 7003 6716 267 254 79 40 chr6 126857502 126857628 -62421926 - MIR SINE MIR -28 234 104 539 336 32 28 chr6 126857946 126858199 -62421355 - MIR SINE MIR 0 262 9 1393 214 70 81 chr6 126858680 126859111 -62420443 + MLT2B1 LTR ERVL 1 426 -94 455 159 24 32 chr6 126859196 126859454 -62420100 + (TTATA)n Simple_repeat Simple_repeat 1 255 0 243 194 34 51 chr6 126859477 126859652 -62419902 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 * 335 158 58 29 chr6 126859529 126859668 -62419886 + (TA)n Simple_repeat Simple_repeat 1 143 0 274 114 91 0 chr6 126859673 126859717 -62419837 + MLT2B1 LTR ERVL 417 464 0 561 247 72 28 chr6 126859722 126859997 -62419557 + MLT1G LTR MaLR 32 400 -190 863 245 59 29 chr6 126861241 126861514 -62418040 - L2 LINE L2 -10 3303 3023 24 53 0 0 chr6 126862204 126862242 -62417312 + AT_rich Low_complexity Low_complexity 1 38 0 2255 131 26 1 chr6 126862596 126863028 -62416526 - L1M1 LINE L1 -680 5625 5180 264 324 9 9 chr6 126863156 126863261 -62416293 + MLT1J2 LTR MaLR 346 450 0 228 67 0 0 chr6 126863289 126863319 -62416235 + (T)n Simple_repeat Simple_repeat 1 30 0 698 198 38 0 chr6 126863323 126863609 -62415945 - L1M1 LINE L1 -969 5177 4826 * 2868 150 13 15 chr6 126863604 126864136 -62415418 + L1MA4 LINE L1 5636 6166 -134 741 266 141 27 chr6 126864303 126864672 -62414882 - LTR16A LTR ERVL -9 441 31 2138 112 3 0 chr6 126864756 126865059 -62414495 + AluSx SINE Alu 3 306 -6 1416 313 83 56 chr6 126865175 126866461 -62413093 - L1M4 LINE L1 -1554 4592 3272 31 58 0 0 chr6 126866462 126866514 -62413040 + AT_rich Low_complexity Low_complexity 1 52 0 929 124 0 0 chr6 126866575 126866704 -62412850 - AluSq/x SINE Alu -180 133 5 1054 207 8 53 chr6 126867596 126867862 -62411692 - L1MD3 LINE L1 -173 7822 7569 1453 106 5 0 chr6 126867878 126868085 -62411469 - AluSq SINE Alu -6 307 100 226 196 406 0 chr6 126868654 126868792 -62410762 + MER5C DNA MER1_type 130 323 -1 13603 178 40 14 chr6 126869810 126874058 -62405496 - L1PB2 LINE L1 -36 6831 2465 21 0 0 0 chr6 126874732 126874753 -62404801 + AT_rich Low_complexity Low_complexity 1 21 0 264 212 0 61 chr6 126874925 126874991 -62404563 + MLT1L LTR MaLR 1 62 -553 271 312 26 0 chr6 126875138 126875215 -62404339 + MLT1L LTR MaLR 309 387 -228 21 71 0 0 chr6 126875764 126875806 -62403748 + AT_rich Low_complexity Low_complexity 1 42 0 2011 136 14 0 chr6 126875849 126876144 -62403410 - AluSq SINE Alu -14 299 1 265 263 0 0 chr6 126877375 126877432 -62402122 + LTR40a LTR ERVL 41 97 -422 1418 254 103 17 chr6 126877824 126878289 -62401265 - LTR40a LTR ERVL -14 505 1 866 229 147 13 chr6 126878351 126878582 -62400972 + MLT1G1 LTR MaLR 334 595 0 2029 139 3 10 chr6 126879198 126879508 -62400046 - AluSx SINE Alu -2 310 3 649 221 8 0 chr6 126880156 126880278 -62399276 + MER58B DNA MER1_type 184 306 -35 329 293 29 52 chr6 126880315 126880659 -62398895 - L1MEc LINE L1 -5050 1155 819 460 260 224 5 chr6 126881876 126882072 -62397482 - MIR SINE MIR -2 260 22 468 300 233 7 chr6 126882400 126882683 -62396871 + L2 LINE L2 2966 3312 -1 616 266 0 0 chr6 126882760 126882899 -62396655 - L1MEc LINE L1 -6219 177 39 237 350 49 49 chr6 126884566 126884729 -62394825 - MIR SINE MIR -65 197 35 216 263 92 13 chr6 126884982 126885058 -62394496 + L2 LINE L2 663 744 -2570 557 343 96 48 chr6 126885238 126885736 -62393818 - L2 LINE L2 -536 2778 2257 280 360 33 13 chr6 126885844 126885994 -62393560 - L2 LINE L2 -1387 1927 1775 207 220 36 168 chr6 126886248 126886498 -62393056 + L2 LINE L2 2843 3059 -213 8785 172 19 17 chr6 126886737 126888296 -62391258 + L1MA3 LINE L1 22 1583 -5982 1848 122 21 37 chr6 126888291 126888618 -62390936 + L1MA3 LINE L1 2669 2990 -4575 * 11212 172 20 12 chr6 126888619 126888740 -62390814 + L1MA3 LINE L1 4340 4459 -3265 2076 128 0 0 chr6 126888740 126889044 -62390510 + AluSq SINE Alu 1 304 0 11212 172 20 12 chr6 126889044 126892276 -62387278 + L1MA3 LINE L1 4459 7724 0 301 206 47 0 chr6 126892623 126892730 -62386824 + (TA)n Simple_repeat Simple_repeat 1 112 0 883 254 40 74 chr6 126894139 126894237 -62385317 - MLT1A1 LTR MaLR 0 365 265 1949 143 50 31 chr6 126894237 126894594 -62384960 + THE1B LTR MaLR 1 364 0 11373 106 3 1 chr6 126894594 126896170 -62383384 + THE1A-int LTR MaLR 1 1580 0 1999 105 99 42 chr6 126896172 126896377 -62383177 + THE1A LTR MaLR 3 236 -119 2414 99 0 0 chr6 126896377 126896681 -62382873 + AluSx SINE Alu 5 308 -4 1999 105 99 42 chr6 126896681 126896809 -62382745 + THE1A LTR MaLR 236 355 0 883 254 40 74 chr6 126896809 126897084 -62382470 - MLT1A1 LTR MaLR -100 265 1 21 36 0 0 chr6 126897230 126897258 -62382296 + AT_rich Low_complexity Low_complexity 1 28 0 1375 248 73 21 chr6 126898160 126898583 -62380971 - L1MC4 LINE L1 -149 7893 7449 622 269 6 6 chr6 126898699 126898866 -62380688 - L1MC4 LINE L1 -1416 6626 6460 195 254 0 0 chr6 126899145 126899208 -62380346 + GA-rich Low_complexity Low_complexity 4 66 0 2759 139 34 12 chr6 126899381 126900329 -62379225 - L1MA9 LINE L1 -1 6311 5296 1193 185 9 0 chr6 126901099 126901331 -62378223 + L1MA4 LINE L1 6064 6297 -3 225 0 0 0 chr6 126901394 126901419 -62378135 + (TG)n Simple_repeat Simple_repeat 2 26 0 2100 113 3 0 chr6 126901419 126901706 -62377848 - AluSg SINE Alu -17 289 1 24 0 0 0 chr6 126901712 126901736 -62377818 + AT_rich Low_complexity Low_complexity 1 24 0 224 194 16 16 chr6 126901767 126901829 -62377725 + T-rich Low_complexity Low_complexity 6 67 0 218 264 0 0 chr6 126904381 126904434 -62375120 + (CGAG)n Simple_repeat Simple_repeat 2 54 0 755 304 78 52 chr6 126904511 126904919 -62374635 + L2 LINE L2 2895 3313 0 265 362 48 0 chr6 126905233 126905338 -62374216 - L2 LINE L2 -6 3266 3157 206 394 0 0 chr6 126905866 126905937 -62373617 - L2 LINE L2 -22 3291 3221 204 346 29 19 chr6 126907751 126907855 -62371699 + MIR3 SINE MIR 50 154 -54 1896 220 54 20 chr6 126908642 126909102 -62370452 - Charlie1a DNA MER1_type -978 477 2 556 340 105 51 chr6 126909102 126909648 -62369906 - L1M4 LINE L1 -2449 3697 3182 1976 101 3 88 chr6 126909648 126909976 -62369578 + AluSq SINE Alu 1 300 -13 556 340 105 51 chr6 126909976 126910787 -62368767 - L1M4 LINE L1 -2964 3182 2266 23 0 0 0 chr6 126910915 126910938 -62368616 + AT_rich Low_complexity Low_complexity 1 23 0 2135 124 0 0 chr6 126911055 126911366 -62368188 - AluSx SINE Alu 0 311 1 30 59 0 0 chr6 126911495 126911546 -62368008 + AT_rich Low_complexity Low_complexity 1 51 0 718 294 69 60 chr6 126911615 126912394 -62367160 - HAL1b LINE L1 -498 850 65 1732 264 39 10 chr6 126912932 126913414 -62366140 + MLT1H1 LTR MaLR 22 517 -38 2377 46 0 3 chr6 126913607 126913959 -62365595 - AluY SINE Alu 0 351 1 187 385 83 0 chr6 126914080 126914176 -62365378 - MIR SINE MIR -75 133 30 30977 38 4 2 chr6 126915284 126919096 -62360458 - L1P LINE L1 -1684 4462 644 7527 24 9 0 chr6 126919096 126920636 -62358918 + L1PA3 LINE L1 4605 6155 0 205 276 87 63 chr6 126920725 126920852 -62358702 - L2 LINE L2 -1414 1900 1771 184 294 20 0 chr6 126920988 126921039 -62358515 - MIR SINE MIR -112 150 99 351 218 98 92 chr6 126921998 126922172 -62357382 + MIR SINE MIR 52 226 -36 194 0 39 0 chr6 126922188 126922214 -62357340 + (TC)n Simple_repeat Simple_repeat 2 28 0 235 210 136 0 chr6 126922227 126922308 -62357246 + L1MC4 LINE L1 6611 6702 -1340 740 339 160 34 chr6 126922574 126923904 -62355650 + L2 LINE L2 926 2423 -891 1438 219 115 28 chr6 126923909 126924457 -62355097 + MLT1E3 LTR MaLR 6 624 0 299 346 68 60 chr6 126924471 126924939 -62354615 + L2 LINE L2 2432 2903 -411 2900 3 0 0 chr6 126926655 126926966 -62352588 + AluYa5 SINE Alu 1 311 0 22 35 0 0 chr6 126927883 126927912 -62351642 + AT_rich Low_complexity Low_complexity 1 29 0 577 254 33 58 chr6 126928642 126928882 -62350672 - L1ME1 LINE L1 -5 6161 5928 3132 248 91 36 chr6 126929023 126930126 -62349428 - L1ME1 LINE L1 -208 5958 4918 2192 118 3 0 chr6 126930126 126930423 -62349131 - AluSx SINE Alu -14 298 1 3132 248 91 36 chr6 126930423 126931418 -62348136 - L1ME1 LINE L1 -1248 4918 3720 1330 231 96 12 chr6 126931438 126931919 -62347635 - L1ME1 LINE L1 -2879 3267 2747 447 320 81 25 chr6 126932041 126932408 -62347146 + MLT1H LTR MaLR 97 523 -26 627 217 126 94 chr6 126932495 126932772 -62346782 + MLT1H LTR MaLR 262 547 -2 188 0 0 69 chr6 126933574 126933603 -62345951 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 347 306 14 49 chr6 126933991 126934157 -62345397 + MIR SINE MIR 38 197 -65 445 284 205 0 chr6 126934384 126934574 -62344980 - MIR SINE MIR -32 230 2 809 271 138 11 chr6 126934723 126935070 -62344484 - L2 LINE L2 -4 3309 2919 1040 219 75 18 chr6 126935353 126935631 -62343923 + AluJb SINE Alu 3 296 -6 306 0 0 0 chr6 126935667 126935701 -62343853 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 392 267 6 91 chr6 126935766 126935932 -62343622 + MIR3 SINE MIR 54 206 -2 894 366 59 42 chr6 126938365 126939140 -62340414 + L2 LINE L2 2230 3016 -256 23 0 0 0 chr6 126939150 126939173 -62340381 + AT_rich Low_complexity Low_complexity 1 23 0 360 200 0 0 chr6 126939695 126939770 -62339784 + CT-rich Low_complexity Low_complexity 4 78 0 231 246 0 31 chr6 126940476 126940541 -62339013 + (TATG)n Simple_repeat Simple_repeat 2 64 0 1324 221 53 18 chr6 126940698 126941038 -62338516 + MLT1A1 LTR MaLR 10 361 -4 22 35 0 0 chr6 126941086 126941115 -62338439 + AT_rich Low_complexity Low_complexity 1 29 0 305 308 52 35 chr6 126941261 126941433 -62338121 - MIR SINE MIR 0 262 88 1934 152 24 0 chr6 126943043 126943340 -62336214 - AluSx SINE Alu -8 304 1 3639 137 25 14 chr6 126995659 126996287 -62283267 + MER41B LTR ERV1 1 635 0 21 36 0 0 chr6 126996869 126996897 -62282657 + AT_rich Low_complexity Low_complexity 1 28 0 4911 111 3 19 chr6 126997285 126998059 -62281495 + L1P LINE L1 4529 5289 -857 26 0 0 0 chr6 126998220 126998246 -62281308 + AT_rich Low_complexity Low_complexity 1 26 0 270 215 25 146 chr6 126999787 126999945 -62279609 + MLT1H LTR MaLR 411 549 0 633 229 153 46 chr6 127000223 127000485 -62279069 - L2 LINE L2 0 3313 3024 1062 140 23 18 chr6 127000533 127000704 -62278850 + AluSg/x SINE Alu 121 292 -20 2619 174 19 62 chr6 127003665 127004233 -62275321 + MER44D DNA MER2_type 4 602 -3 242 263 12 12 chr6 127004311 127004391 -62275163 + (TA)n Simple_repeat Simple_repeat 2 81 0 226 245 11 11 chr6 127004943 127005037 -62274517 + CT-rich Low_complexity Low_complexity 1 94 0 1474 188 50 17 chr6 127005447 127005745 -62273809 + MLT1A1 LTR MaLR 56 363 -2 285 352 121 30 chr6 127005749 127006147 -62273407 + L3 LINE CR1 905 1338 -239 24 67 0 0 chr6 127006475 127006520 -62273034 + AT_rich Low_complexity Low_complexity 1 45 0 763 114 0 0 chr6 127007044 127007149 -62272405 + THE1B LTR MaLR 1 105 -270 3516 184 61 129 chr6 127007149 127008830 -62270724 - MER52C LTR ERV1 0 1278 12 1739 116 7 43 chr6 127008831 127009034 -62270520 + THE1B LTR MaLR 99 291 -73 2334 91 7 0 chr6 127009034 127009341 -62270213 - AluSc SINE Alu 0 309 1 1739 116 7 43 chr6 127009341 127009413 -62270141 + THE1B LTR MaLR 291 364 0 234 0 0 0 chr6 127010020 127010046 -62269508 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 396 0 0 0 chr6 127010045 127010089 -62269465 + (TC)n Simple_repeat Simple_repeat 2 45 0 224 211 0 40 chr6 127010554 127010630 -62268924 + (TTTA)n Simple_repeat Simple_repeat 2 74 0 288 322 76 0 chr6 127011643 127011761 -62267793 + L2 LINE L2 3142 3268 -4 638 130 28 0 chr6 127012491 127012599 -62266955 + L1M2 LINE L1 5504 5614 -686 2240 79 0 16 chr6 127013996 127014299 -62265255 + AluY SINE Alu 1 298 -13 270 359 10 0 chr6 127014605 127014708 -62264846 - MIR3 SINE MIR -3 205 102 3733 184 21 12 chr6 127014737 127015502 -62264052 - L1 LINE L1 -900 5246 4475 21 57 0 0 chr6 127015502 127015537 -62264017 + AT_rich Low_complexity Low_complexity 1 35 0 429 351 95 26 chr6 127015734 127016196 -62263358 + L1MC/D LINE L1 4739 5232 -914 636 288 67 64 chr6 127016212 127016746 -62262808 + L1MC/D LINE L1 5256 5791 -2017 2103 90 10 10 chr6 127017117 127017407 -62262147 + AluSp SINE Alu 3 292 -21 240 146 0 42 chr6 127018203 127018251 -62261303 - HsTC2 DNA Tc2 -1819 79 34 517 252 119 13 chr6 127018838 127018997 -62260557 + MER58A DNA MER1_type 45 220 -4 30 69 0 0 chr6 127019115 127019173 -62260381 + AT_rich Low_complexity Low_complexity 1 58 0 200 173 39 0 chr6 127019284 127019336 -62260218 + (TA)n Simple_repeat Simple_repeat 2 55 0 2343 84 0 0 chr6 127019825 127020122 -62259432 + AluSx SINE Alu 1 297 -15 215 308 66 11 chr6 127020161 127020252 -62259302 - MIR SINE MIR -135 127 32 530 268 40 44 chr6 127020956 127021184 -62258370 + MLT1E3 LTR MaLR 326 552 -72 1719 127 108 8 chr6 127021203 127021462 -62258092 - AluSg SINE Alu -21 289 5 2162 119 3 0 chr6 127021475 127021769 -62257785 - AluSc SINE Alu -12 297 3 319 150 17 17 chr6 127021777 127021837 -62257717 + MLT1E3 LTR MaLR 564 623 -1 484 261 49 14 chr6 127021838 127021980 -62257574 - MLT1J2 LTR MaLR -288 162 16 817 367 76 38 chr6 127022589 127023573 -62255981 + L2 LINE L2 2246 3272 0 22 35 0 0 chr6 127023784 127023813 -62255741 + AT_rich Low_complexity Low_complexity 1 29 0 301 176 12 12 chr6 127024371 127024456 -62255098 + GA-rich Low_complexity Low_complexity 2 86 0 551 213 173 14 chr6 127025700 127025888 -62253666 - MLT2B1 LTR ERVL -12 508 235 2028 136 45 23 chr6 127025903 127026256 -62253298 + THE1C LTR MaLR 15 375 0 1158 228 27 11 chr6 127026258 127026521 -62253033 - MLT2B1 LTR ERVL -253 267 1 341 238 0 0 chr6 127026547 127026627 -62252927 + L2 LINE L2 2683 2762 -552 1685 152 51 36 chr6 127027521 127027877 -62251677 - MER46B DNA MER2_type 0 236 1 371 284 120 83 chr6 127028008 127028416 -62251138 - L1 LINE L1 -953 5193 4771 243 0 0 0 chr6 127028499 127028526 -62251028 + (TG)n Simple_repeat Simple_repeat 1 27 0 298 235 0 71 chr6 127030226 127030311 -62249243 - MIR SINE MIR -86 176 98 41 0 0 0 chr6 127033556 127033597 -62245957 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr6 127033633 127033662 -62245892 + AT_rich Low_complexity Low_complexity 1 29 0 1310 149 23 32 chr6 127033815 127034036 -62245518 - MER20 DNA MER1_type 0 219 1 370 278 68 49 chr6 127034604 127034766 -62244788 - MIR3 SINE MIR -12 196 32 285 291 90 8 chr6 127036600 127036748 -62242806 + MIR SINE MIR 19 180 -62 373 321 72 26 chr6 127037550 127037896 -62241658 - L1ME4a LINE L1 -237 5884 5523 26 93 0 0 chr6 127038118 127038193 -62241361 + AT_rich Low_complexity Low_complexity 1 75 0 3783 103 42 2 chr6 127038504 127039056 -62240498 - L1PA14 LINE L1 -266 5895 5322 632 262 100 37 chr6 127039063 127039334 -62240220 + MLT1J2 LTR MaLR 163 450 0 1008 119 26 0 chr6 127040471 127040724 -62238830 + GA-rich Low_complexity Low_complexity 1 440 0 7500 254 43 49 chr6 127040899 127045581 -62233973 + L1M3b LINE L1 2 4293 -2057 1070 113 0 6 chr6 127045692 127045852 -62233702 + AluSg/x SINE Alu 154 312 0 213 340 116 20 chr6 127045973 127046120 -62233434 - L2 LINE L2 -498 2816 2656 354 85 0 0 chr6 127046123 127046170 -62233384 - Alu SINE Alu -254 47 1 29 0 0 0 chr6 127046842 127046871 -62232683 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 127046926 127046947 -62232607 + AT_rich Low_complexity Low_complexity 1 21 0 239 79 26 0 chr6 127048182 127048220 -62231334 + (TG)n Simple_repeat Simple_repeat 2 40 0 2032 117 16 23 chr6 127048294 127048602 -62230952 + AluSx SINE Alu 1 306 -6 465 327 153 28 chr6 127048710 127049176 -62230378 - L2 LINE L2 -5 3308 2787 1119 272 94 8 chr6 127049180 127049573 -62229981 - LTR16A LTR ERVL -1 449 23 210 368 13 0 chr6 127049575 127049651 -62229903 - L2 LINE L2 -536 2778 2702 194 0 39 0 chr6 127049960 127049986 -62229568 + (TG)n Simple_repeat Simple_repeat 2 28 0 756 230 186 34 chr6 127050236 127050527 -62229027 + L1MD2 LINE L1 6012 6346 -13 297 327 164 0 chr6 127050573 127050732 -62228822 + L2 LINE L2 2166 2350 -964 346 286 46 57 chr6 127050821 127050996 -62228558 - MIR SINE MIR -70 192 20 27824 31 18 2 chr6 127051809 127057285 -62222269 + L1P1 LINE L1 1 5608 -547 296 343 20 0 chr6 127057388 127057487 -62222067 + MLT1J1 LTR MaLR 216 316 -130 3226 96 16 0 chr6 127057560 127058006 -62221548 + MLT2A2 LTR ERVL 1 453 0 368 257 37 46 chr6 127058237 127058346 -62221208 - MER91C DNA MER1_type -32 108 1 462 261 48 48 chr6 127058903 127059068 -62220486 + MER5A DNA MER1_type 25 189 0 29 60 0 0 chr6 127060138 127060188 -62219366 + AT_rich Low_complexity Low_complexity 1 50 0 241 102 34 17 chr6 127060924 127060983 -62218571 + (TTAAA)n Simple_repeat Simple_repeat 2 61 0 429 314 89 29 chr6 127061034 127061416 -62218138 - L1ME4a LINE L1 -195 5926 5522 414 331 40 34 chr6 127063514 127063689 -62215865 - MIR SINE MIR -67 195 20 3271 145 70 80 chr6 127065203 127066218 -62213336 + pTR5 LTR ERV1 741 2025 -413 329 240 31 0 chr6 127066218 127066314 -62213240 + LTR30 LTR ERV1 544 642 -80 2348 86 9 0 chr6 127066314 127066638 -62212916 + pTR5 LTR ERV1 66 392 -2046 216 390 85 15 chr6 127066973 127067173 -62212381 - L3 LINE CR1 -1333 244 31 2413 86 3 0 chr6 127067745 127068047 -62211507 - AluSp SINE Alu -10 303 1 444 19 0 0 chr6 127068380 127068433 -62211121 + (CA)n Simple_repeat Simple_repeat 2 54 0 341 384 60 51 chr6 127068700 127069015 -62210539 - L2 LINE L2 0 3272 2955 303 303 138 86 chr6 127069039 127069366 -62210188 - L2 LINE L2 -591 2723 2380 183 156 0 0 chr6 127069435 127069467 -62210087 + C-rich Low_complexity Low_complexity 4 35 0 31 0 0 0 chr6 127069879 127069910 -62209644 + AT_rich Low_complexity Low_complexity 1 31 0 770 132 0 0 chr6 127069995 127070116 -62209438 + L1MB1 LINE L1 5494 5614 -554 2069 132 50 26 chr6 127070116 127070458 -62209096 - THE1B LTR MaLR -13 351 2 2954 148 19 39 chr6 127070458 127071026 -62208528 + L1MB1 LINE L1 5609 6165 -3 10868 80 13 5 chr6 127071594 127073853 -62205701 + L1PA6 LINE L1 3880 6154 0 405 0 0 0 chr6 127074318 127074363 -62205191 + (TG)n Simple_repeat Simple_repeat 2 46 0 2136 100 3 10 chr6 127074445 127074745 -62204809 + AluSc SINE Alu 1 298 -11 287 331 96 13 chr6 127075767 127075924 -62203630 + MIR SINE MIR 91 260 -2 24 67 0 0 chr6 127076261 127076306 -62203248 + AT_rich Low_complexity Low_complexity 1 45 0 258 32 0 0 chr6 127076350 127076381 -62203173 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 43 0 0 chr6 127076838 127076861 -62202693 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 342 57 19 0 chr6 127078300 127078353 -62201201 + L1PA2 LINE L1 6098 6151 -4 233 258 72 10 chr6 127078446 127078543 -62201011 + L1ME4a LINE L1 5961 6063 -58 407 295 11 78 chr6 127079204 127079475 -62200079 - L2 LINE L2 -903 2411 2159 415 319 151 24 chr6 127080946 127081197 -62198357 - L3 LINE CR1 -3 1574 1292 291 310 134 32 chr6 127081601 127081817 -62197737 + MIR SINE MIR 20 257 -5 277 254 0 17 chr6 127082032 127082091 -62197463 + MIR SINE MIR 89 146 -62 3092 183 94 19 chr6 127082152 127082577 -62196977 - L1MA9 LINE L1 -131 6181 5684 1186 202 145 0 chr6 127082577 127082839 -62196715 + AluJo SINE Alu 1 300 -2 3092 183 94 19 chr6 127082839 127083097 -62196457 - L1MA9 LINE L1 -628 5684 5447 2265 178 41 4 chr6 127083095 127083593 -62195961 + L1MA9 LINE L1 4898 5415 -748 * 256 219 27 14 chr6 127083610 127083683 -62195871 - L1MC5 LINE L1 -49 7912 7839 184 293 132 35 chr6 127084384 127084702 -62194852 + L2 LINE L2 2013 2361 -953 229 356 106 15 chr6 127084889 127085021 -62194533 + MIR SINE MIR 114 257 -5 546 174 17 9 chr6 127086347 127086462 -62193092 + MER53 DNA DNA 74 189 0 762 294 0 9 chr6 127086822 127087033 -62192521 - MIR SINE MIR -51 211 3 22 35 0 0 chr6 127087834 127087863 -62191691 + AT_rich Low_complexity Low_complexity 1 29 0 36 70 0 0 chr6 127087965 127088036 -62191518 + AT_rich Low_complexity Low_complexity 1 71 0 225 310 17 26 chr6 127089118 127089234 -62190320 + MIR SINE MIR 148 262 0 252 346 13 0 chr6 127089386 127089539 -62190015 + (TA)n Simple_repeat Simple_repeat 2 156 0 21 0 0 0 chr6 127089804 127089825 -62189729 + AT_rich Low_complexity Low_complexity 1 21 0 249 281 156 0 chr6 127090218 127090314 -62189240 - MIR SINE MIR -21 241 131 234 256 8 23 chr6 127090539 127090668 -62188886 + CT-rich Low_complexity Low_complexity 2 128 0 29 70 0 0 chr6 127091016 127091073 -62188481 + AT_rich Low_complexity Low_complexity 1 57 0 242 358 126 14 chr6 127091158 127091451 -62188103 + L2 LINE L2 2511 2836 -478 609 219 97 34 chr6 127091555 127091793 -62187761 + MER112 DNA MER1_type 8 260 0 516 323 36 27 chr6 127091794 127092017 -62187537 + MIR SINE MIR 12 236 -26 200 154 19 0 chr6 127092305 127092357 -62187197 + (CA)n Simple_repeat Simple_repeat 2 54 0 294 280 17 68 chr6 127092462 127092580 -62186974 + L2 LINE L2 3169 3280 -33 387 0 0 0 chr6 127093764 127093807 -62185747 + (TG)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr6 127095228 127095249 -62184305 + AT_rich Low_complexity Low_complexity 1 21 0 365 335 92 6 chr6 127095297 127095474 -62184080 - MIR SINE MIR -58 204 13 1482 178 55 7 chr6 127095559 127095852 -62183702 - AluJo SINE Alu 0 312 6 200 181 35 14 chr6 127097551 127097695 -62181859 + (TA)n Simple_repeat Simple_repeat 1 147 0 369 291 24 0 chr6 127098028 127098155 -62181399 + L2 LINE L2 3117 3246 -67 42698 36 22 1 chr6 127098502 127104528 -62175026 + L1HS LINE L1 1 6154 -1 2055 89 57 3 chr6 127105980 127106262 -62173292 + AluSp SINE Alu 1 297 -16 24 67 0 0 chr6 127106821 127106866 -62172688 + AT_rich Low_complexity Low_complexity 1 45 0 240 35 0 0 chr6 127107923 127107952 -62171602 + (CA)n Simple_repeat Simple_repeat 1 29 0 180 152 0 0 chr6 127107953 127107986 -62171568 + (TA)n Simple_repeat Simple_repeat 2 34 0 3281 168 42 55 chr6 127108079 127108793 -62170761 + MER44D DNA MER2_type 1 705 0 24 0 0 0 chr6 127109306 127109330 -62170224 + AT_rich Low_complexity Low_complexity 1 24 0 239 53 0 26 chr6 127109960 127109998 -62169556 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 301 296 100 71 chr6 127110586 127110826 -62168728 - LTR16C LTR ERVL -232 259 13 242 272 62 0 chr6 127111447 127111528 -62168026 - L1ME LINE L1 -343 5778 5693 263 349 0 87 chr6 127112060 127112255 -62167299 + MER5B DNA MER1_type 1 178 0 313 325 166 18 chr6 127112408 127112685 -62166869 + L2 LINE L2 2069 2386 -928 1153 111 42 46 chr6 127112705 127112921 -62166633 - L1MA5A LINE L1 -10 6287 6073 3506 130 4 4 chr6 127112921 127113430 -62166124 - MER1A DNA MER1_type -2 527 19 1572 148 43 10 chr6 127113430 127113734 -62165820 - L1MA5A LINE L1 -213 6084 5771 338 260 39 47 chr6 127114005 127114132 -62165422 - L2 LINE L2 -47 3266 3141 210 164 36 18 chr6 127114378 127114433 -62165121 + (TTA)n Simple_repeat Simple_repeat 3 58 0 261 281 16 0 chr6 127114635 127114699 -62164855 - MIR SINE MIR -118 144 80 2052 131 0 7 chr6 127114823 127115129 -62164425 + AluSx SINE Alu 1 304 -8 2184 99 7 3 chr6 127116187 127116480 -62163074 - AluSc SINE Alu -15 294 1 317 353 65 26 chr6 127117621 127117927 -62161627 - L2 LINE L2 -2221 1093 776 769 291 23 23 chr6 127118082 127118343 -62161211 - MIR SINE MIR 0 262 2 260 294 147 57 chr6 127118343 127118542 -62161012 - L2 LINE L2 -2770 544 327 299 321 271 0 chr6 127118659 127118799 -62160755 + MER91A DNA MER1_type 18 195 -1 603 346 25 57 chr6 127119300 127119707 -62159847 + L2 LINE L2 2854 3247 -25 303 261 0 0 chr6 127120197 127120262 -62159292 + MIR SINE MIR 36 100 -108 236 263 100 0 chr6 127120315 127120395 -62159159 - MIR SINE MIR -64 198 111 25 31 0 0 chr6 127121099 127121131 -62158423 + AT_rich Low_complexity Low_complexity 1 32 0 277 250 0 0 chr6 127122709 127122777 -62156777 - LTR41 LTR ERVL -6 767 700 669 215 28 34 chr6 127123317 127123494 -62156060 - LTR41 LTR ERVL -597 176 1 586 230 0 0 chr6 127123513 127123639 -62155915 - FRAM SINE Alu -6 170 45 195 354 0 0 chr6 127123661 127123726 -62155828 + MIR SINE MIR 87 151 -57 24 32 0 0 chr6 127124024 127124055 -62155499 + AT_rich Low_complexity Low_complexity 1 31 0 2016 119 30 0 chr6 127124508 127124803 -62154751 + AluSx SINE Alu 1 304 -8 1899 147 5 80 chr6 127125279 127125654 -62153900 + MER7A DNA MER2_type 1 345 -1 231 245 153 108 chr6 127125755 127126179 -62153375 - MLT1J LTR MaLR -59 452 10 195 100 0 0 chr6 127126235 127126265 -62153289 + (CA)n Simple_repeat Simple_repeat 2 31 0 188 43 64 21 chr6 127126281 127126328 -62153226 + (TA)n Simple_repeat Simple_repeat 2 50 0 2450 122 6 3 chr6 127128387 127128748 -62150806 - THE1B LTR MaLR -2 362 1 28 0 0 0 chr6 127128828 127128856 -62150698 + AT_rich Low_complexity Low_complexity 1 28 0 1127 274 97 7 chr6 127129259 127130158 -62149396 - L1ME1 LINE L1 -5 6161 5184 321 167 45 15 chr6 127130160 127130226 -62149328 + L1M4 LINE L1 3480 3547 -2599 * 333 299 0 22 chr6 127130225 127130362 -62149192 + L1MEc LINE L1 1895 2028 -4368 2431 230 71 16 chr6 127130397 127131018 -62148536 + L1MEc LINE L1 2315 2999 -3216 180 0 0 0 chr6 127131018 127131038 -62148516 + (CA)n Simple_repeat Simple_repeat 1 20 0 2431 230 71 16 chr6 127131038 127131294 -62148260 + L1MEc LINE L1 2999 3240 -2975 969 180 37 23 chr6 127131298 127131515 -62148039 - Tigger1 DNA MER2_type 0 2418 2199 4415 141 24 0 chr6 127131634 127132350 -62147204 - Tigger1 DNA MER2_type -205 2213 1481 186 43 0 0 chr6 127132360 127132383 -62147171 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 625 143 176 0 chr6 127132390 127132509 -62147045 - AluJo SINE Alu -32 280 141 1993 157 26 14 chr6 127132512 127132857 -62146697 - MSTB LTR MaLR 0 426 78 482 141 0 0 chr6 127132863 127132934 -62146620 + MSTB LTR MaLR 9 79 -347 2053 100 0 69 chr6 127132953 127133273 -62146281 + AluSc SINE Alu 1 298 -11 776 122 0 24 chr6 127133302 127133425 -62146129 - AluJo SINE Alu -168 144 25 9043 143 15 9 chr6 127133468 127134939 -62144615 - Tigger1 DNA MER2_type -939 1479 1 2150 249 102 22 chr6 127134950 127135777 -62143777 + L1MEc LINE L1 3195 4087 -2128 201 74 0 0 chr6 127136335 127136362 -62143192 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 234 208 0 0 chr6 127136877 127136930 -62142624 + (TA)n Simple_repeat Simple_repeat 1 53 0 1102 230 97 7 chr6 127139547 127139856 -62139698 + MER58B DNA MER1_type 5 341 0 672 258 73 0 chr6 127141024 127141202 -62138352 + L2 LINE L2 3123 3313 0 434 281 101 40 chr6 127142140 127142368 -62137186 - MLT1I LTR MaLR -167 242 1 229 174 0 139 chr6 127142462 127142577 -62136977 + L1MC4 LINE L1 6606 6704 -1338 21 57 0 0 chr6 127142681 127142716 -62136838 + AT_rich Low_complexity Low_complexity 1 35 0 267 318 40 66 chr6 127144073 127144224 -62135330 - L2 LINE L2 0 3313 3167 1196 207 159 93 chr6 127144261 127144764 -62134790 - MLT2B3 LTR ERVL 0 554 19 296 253 56 138 chr6 127144827 127145031 -62134523 + MIR3 SINE MIR 56 241 -21 2146 74 0 0 chr6 127145529 127145798 -62133756 - AluY SINE Alu -8 303 35 22 56 0 0 chr6 127145798 127145834 -62133720 + AT_rich Low_complexity Low_complexity 1 36 0 193 327 179 18 chr6 127145842 127146010 -62133544 - MIR SINE MIR -8 254 60 9263 202 34 31 chr6 127146173 127148385 -62131169 - L1MC3 LINE L1 -8 7777 5559 222 294 0 0 chr6 127148554 127148605 -62130949 + polypyrimidine Low_complexity Low_complexity 3 53 0 29 0 0 0 chr6 127150196 127150225 -62129329 + AT_rich Low_complexity Low_complexity 1 29 0 2015 242 82 22 chr6 127150264 127150887 -62128667 - L1ME1 LINE L1 -10 6225 5566 3173 164 8 2 chr6 127150889 127151394 -62128160 + MLT2B1 LTR ERVL 5 512 -8 565 283 25 21 chr6 127151398 127151635 -62127919 - L1ME1 LINE L1 -2279 5575 5338 317 266 131 26 chr6 127151791 127152020 -62127534 - L1ME1 LINE L1 -949 5266 5014 2634 257 107 55 chr6 127152100 127153043 -62126511 - L1ME1 LINE L1 -2622 3593 2701 2127 111 3 0 chr6 127153043 127153331 -62126223 + AluSx SINE Alu 3 291 -21 2634 257 107 55 chr6 127153331 127153511 -62126043 - L1ME1 LINE L1 -3514 2701 2532 862 74 8 0 chr6 127153511 127153632 -62125922 - L1MA1 LINE L1 -7 6295 6174 2634 257 107 55 chr6 127153632 127155622 -62123932 - L1ME1 LINE L1 -3683 2532 350 21 36 0 0 chr6 127156995 127157023 -62122531 + AT_rich Low_complexity Low_complexity 1 28 0 350 214 20 0 chr6 127157645 127157743 -62121811 + (CATA)n Simple_repeat Simple_repeat 3 102 0 617 193 96 6 chr6 127158379 127158545 -62121009 + MER53 DNA DNA 1 181 -8 1854 272 47 13 chr6 127160486 127161023 -62118531 + MLT1H1 LTR MaLR 1 555 0 255 33 0 0 chr6 127161503 127161533 -62118021 + MER68 LTR ERV1 1 30 -532 2496 75 3 0 chr6 127161533 127161840 -62117714 + AluY SINE Alu 1 308 -3 2775 190 32 20 chr6 127161853 127162391 -62117163 + MER68 LTR ERV1 17 560 -2 402 153 20 10 chr6 127162418 127162516 -62117038 + (CA)n Simple_repeat Simple_repeat 1 99 0 23 0 0 0 chr6 127162542 127162565 -62116989 + AT_rich Low_complexity Low_complexity 1 23 0 1194 295 80 40 chr6 127162639 127163242 -62116312 + L2 LINE L2 1799 2425 -889 23 68 0 0 chr6 127163548 127163592 -62115962 + AT_rich Low_complexity Low_complexity 1 44 0 283 273 50 30 chr6 127163775 127163874 -62115680 + L2 LINE L2 2569 2669 -645 206 280 80 0 chr6 127163975 127164050 -62115504 + MIR SINE MIR 114 194 -68 204 40 0 0 chr6 127214213 127214238 -62065316 + (TCTCTG)n Simple_repeat Simple_repeat 4 28 0 2261 139 32 51 chr6 127214926 127215160 -62064394 - MSTB LTR MaLR -1 425 201 2219 110 0 3 chr6 127215160 127215459 -62064095 - AluSg1 SINE Alu -11 298 1 2261 139 32 51 chr6 127215459 127215656 -62063898 - MSTB LTR MaLR -225 201 2 391 327 93 19 chr6 127216223 127216547 -62063007 + L2 LINE L2 1799 2146 -1168 11580 146 0 0 chr6 127216650 127219217 -62060337 + L1PA2 LINE L1 3544 6149 -6 6249 66 4 1 chr6 127219225 127220026 -62059528 + L1PA8 LINE L1 5352 6154 -18 186 43 0 0 chr6 127220028 127220051 -62059503 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 486 307 18 4 chr6 127220051 127220276 -62059278 - MER114 LTR ERV -420 228 1 31 99 0 0 chr6 127220396 127220497 -62059057 + AT_rich Low_complexity Low_complexity 1 101 0 214 198 233 35 chr6 127220668 127220754 -62058800 - MIR SINE MIR -108 154 52 2315 237 137 43 chr6 127221260 127221995 -62057559 + MER21B LTR ERV1 2 805 -58 2169 94 4 0 chr6 127222536 127222811 -62056743 + AluSq SINE Alu 1 276 -37 314 330 51 33 chr6 127222828 127223101 -62056453 - L1MEc LINE L1 -4579 1817 1540 416 172 50 81 chr6 127225816 127225899 -62053655 + MLT1B LTR MaLR 1 80 -310 848 175 0 26 chr6 127225899 127226092 -62053462 - MER52C LTR ERV1 0 1278 1073 * 3287 152 30 28 chr6 127226089 127226759 -62052795 - MER52C LTR ERV1 -607 671 1 1754 169 19 0 chr6 127226759 127227072 -62052482 + MLT1B LTR MaLR 72 390 0 25 31 0 0 chr6 127227687 127227719 -62051835 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr6 127227864 127227889 -62051665 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr6 127229919 127229947 -62049607 + AT_rich Low_complexity Low_complexity 1 28 0 593 336 80 28 chr6 127230273 127231023 -62048531 + HAL1 LINE L1 961 1749 -758 2145 79 0 0 chr6 127232075 127232365 -62047189 + L1PA6 LINE L1 5863 6152 -2 234 265 0 0 chr6 127232629 127232678 -62046876 - Charlie4 DNA MER1_type -34 1927 1879 224 318 264 21 chr6 127232825 127233064 -62046490 + L2 LINE L2 2681 2977 -337 261 57 0 0 chr6 127233268 127233303 -62046251 + (CA)n Simple_repeat Simple_repeat 1 35 0 452 337 26 5 chr6 127233428 127233621 -62045933 - MIR SINE MIR -1 261 65 23 54 0 0 chr6 127234318 127234355 -62045199 + AT_rich Low_complexity Low_complexity 1 37 0 1717 155 7 21 chr6 127234721 127235011 -62044543 + AluJo SINE Alu 7 292 -20 183 293 24 49 chr6 127235401 127235483 -62044071 - MER5B DNA MER1_type -48 130 51 211 245 20 0 chr6 127235522 127235571 -62043983 + L2 LINE L2 3216 3265 -7 473 269 40 27 chr6 127236096 127236245 -62043309 + MIR3 SINE MIR 50 200 -8 15568 149 40 8 chr6 127236739 127239077 -62040477 - Tigger4(Zombi) DNA MER2_type 0 2731 294 1332 210 52 11 chr6 127239077 127239363 -62040191 + AluJo SINE Alu 1 298 -14 15568 149 40 8 chr6 127239363 127239668 -62039886 - Tigger4(Zombi) DNA MER2_type -2437 294 1 255 151 94 0 chr6 127239627 127239680 -62039874 + MER46A DNA MER2_type 103 160 -76 * 22 56 0 0 chr6 127240376 127240412 -62039142 + AT_rich Low_complexity Low_complexity 1 36 0 1958 179 29 26 chr6 127240442 127240598 -62038956 - MLT1B LTR MaLR -1 389 235 1651 193 34 8 chr6 127240598 127240950 -62038604 - MLT1A1 LTR MaLR 0 365 5 1958 179 29 26 chr6 127240950 127241174 -62038380 - MLT1B LTR MaLR -155 235 8 3852 201 89 12 chr6 127241379 127242670 -62036884 - L1MA9 LINE L1 -38 6274 4876 228 170 38 38 chr6 127242670 127242723 -62036831 + CT-rich Low_complexity Low_complexity 2 54 0 1419 185 7 36 chr6 127242725 127243006 -62036548 - AluJo SINE Alu -32 280 8 421 214 97 0 chr6 127243008 127243111 -62036443 - L1MA9 LINE L1 -1269 4877 4765 1800 282 91 22 chr6 127243182 127244549 -62035005 + L1ME LINE L1 17 1503 -4758 393 250 23 0 chr6 127244552 127244640 -62034914 + L1MDa LINE L1 7 96 -6444 186 103 0 0 chr6 127244640 127244669 -62034885 + (TG)n Simple_repeat Simple_repeat 2 30 0 1379 209 16 71 chr6 127244776 127245144 -62034410 + L1MDa LINE L1 119 466 -6074 465 292 64 49 chr6 127245449 127246077 -62033477 - L1MEc LINE L1 -4745 1618 1007 334 109 250 0 chr6 127247429 127247493 -62032061 + MADE1 DNA Mariner 1 80 0 678 314 27 0 chr6 127247774 127247962 -62031592 - MIR SINE MIR -69 193 1 1763 167 18 56 chr6 127249943 127250338 -62029216 - L1MA9 LINE L1 0 6312 5933 201 156 0 0 chr6 127250615 127250647 -62028907 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 7367 41 4 2 chr6 127251162 127252337 -62027217 + L1PA5 LINE L1 4978 6154 0 538 261 171 6 chr6 127252584 127252760 -62026794 + MIR SINE MIR 57 261 -1 26 50 0 0 chr6 127253861 127253901 -62025653 + AT_rich Low_complexity Low_complexity 1 40 0 201 167 0 0 chr6 127255566 127255602 -62023952 + A-rich Low_complexity Low_complexity 1 36 0 190 148 25 49 chr6 127255777 127255858 -62023696 + CT-rich Low_complexity Low_complexity 2 80 0 452 320 135 9 chr6 127256453 127256675 -62022879 + MIR SINE MIR 3 252 -10 41798 30 18 1 chr6 127256842 127262795 -62016759 - L1PA2 LINE L1 0 6155 79 492 327 14 19 chr6 127263161 127263372 -62016182 - MIR SINE MIR 0 262 53 8075 143 9 19 chr6 127263663 127264070 -62015484 + Tigger1 DNA MER2_type 4 414 -2004 2098 134 0 7 chr6 127264070 127264376 -62015178 + AluSc SINE Alu 1 304 -5 8075 143 9 19 chr6 127264376 127265299 -62014255 + Tigger1 DNA MER2_type 414 1320 -1098 1119 186 52 12 chr6 127265416 127265542 -62014012 + Tigger1 DNA MER2_type 2161 2280 -138 2358 80 0 0 chr6 127265542 127265841 -62013713 - AluY SINE Alu -12 299 1 1119 186 52 12 chr6 127265841 127265962 -62013592 + Tigger1 DNA MER2_type 2280 2418 0 27 62 0 0 chr6 127266736 127266784 -62012770 + AT_rich Low_complexity Low_complexity 1 48 0 268 218 282 27 chr6 127266896 127267006 -62012548 + MIR SINE MIR 84 221 -41 1852 92 84 0 chr6 127267280 127267585 -62011969 + AluSx SINE Alu 1 327 0 211 357 62 16 chr6 127267590 127267719 -62011835 + L3 LINE CR1 674 808 -769 234 297 136 0 chr6 127267885 127268003 -62011551 - MLT1L LTR MaLR -32 583 450 1556 226 41 0 chr6 127268013 127268376 -62011178 + L1ME1 LINE L1 5783 6160 -6 459 299 122 55 chr6 127268399 127268743 -62010811 - MLT1L LTR MaLR -177 438 72 2447 146 9 43 chr6 127268841 127269280 -62010274 - MSTB LTR MaLR 0 426 3 229 270 90 36 chr6 127269483 127269594 -62009960 + L3 LINE CR1 1154 1270 -307 196 338 113 40 chr6 127269633 127269784 -62009770 + L3 LINE CR1 1371 1532 -45 306 0 0 0 chr6 127270372 127270406 -62009148 + (TTA)n Simple_repeat Simple_repeat 1 34 0 216 353 16 71 chr6 127271866 127272050 -62007504 - MER5B DNA MER1_type -1 177 4 197 310 39 62 chr6 127272270 127272399 -62007155 - MIR3 SINE MIR -48 160 35 520 157 9 9 chr6 127272816 127272931 -62006623 + CT-rich Low_complexity Low_complexity 2 116 0 21 36 0 0 chr6 127273714 127273742 -62005812 + AT_rich Low_complexity Low_complexity 1 28 0 197 179 0 18 chr6 127274225 127274281 -62005273 + (CA)n Simple_repeat Simple_repeat 2 56 0 213 222 0 0 chr6 127274525 127274570 -62004984 + (CATA)n Simple_repeat Simple_repeat 3 47 0 273 250 273 23 chr6 127274657 127274789 -62004765 + MIR SINE MIR 4 168 -94 2277 127 74 0 chr6 127274854 127275193 -62004361 + THE1B LTR MaLR 1 364 0 231 331 60 23 chr6 127275255 127275388 -62004166 - LTR33 LTR ERVL 0 521 384 204 40 0 0 chr6 127276141 127276166 -62003388 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 582 336 78 51 chr6 127276440 127277214 -62002340 + L2 LINE L2 2518 3312 -1 1076 351 39 17 chr6 127277817 127278224 -62001330 + MER115 DNA AcHobo 17 432 -261 2237 153 42 38 chr6 127279226 127279604 -61999950 + MSTA LTR MaLR 1 383 -45 2133 125 0 0 chr6 127279604 127279900 -61999654 + AluSg SINE Alu 2 297 -13 2237 153 42 38 chr6 127279900 127279946 -61999608 + MSTA LTR MaLR 383 427 -1 23 68 0 0 chr6 127280951 127280995 -61998559 + AT_rich Low_complexity Low_complexity 1 44 0 225 0 0 0 chr6 127282023 127282048 -61997506 + (CA)n Simple_repeat Simple_repeat 2 26 0 28 61 0 0 chr6 127283980 127284029 -61995525 + AT_rich Low_complexity Low_complexity 1 49 0 226 263 18 70 chr6 127284411 127284525 -61995029 - MLT1K LTR MaLR -2 586 479 1043 207 121 137 chr6 127286245 127286343 -61993211 + MLT1C LTR MaLR 1 99 -368 2072 133 0 0 chr6 127286343 127286636 -61992918 + AluSq SINE Alu 21 313 0 1043 207 121 137 chr6 127286636 127287050 -61992504 + MLT1C LTR MaLR 99 467 0 888 118 0 0 chr6 127287489 127287625 -61991929 + (TA)n Simple_repeat Simple_repeat 2 137 0 368 330 0 17 chr6 127288358 127288476 -61991078 - MIR SINE MIR -63 145 30 367 335 154 10 chr6 127288601 127288894 -61990660 - L1ME4a LINE L1 -95 6026 5692 522 265 86 19 chr6 127289012 127289174 -61990380 + MIR SINE MIR 80 252 -10 339 289 13 0 chr6 127289366 127289442 -61990112 + L2 LINE L2 3204 3280 -33 24 0 0 0 chr6 127290437 127290461 -61989093 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr6 127290508 127290543 -61989011 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr6 127291235 127291264 -61988290 + AT_rich Low_complexity Low_complexity 1 29 0 1002 269 8 4 chr6 127291591 127291829 -61987725 + MER8 DNA MER2_type 1 239 0 23 0 0 0 chr6 127291871 127291894 -61987660 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr6 127292014 127292043 -61987511 + AT_rich Low_complexity Low_complexity 1 29 0 566 88 0 11 chr6 127292411 127292502 -61987052 + (CA)n Simple_repeat Simple_repeat 2 91 0 27 29 0 0 chr6 127292572 127292606 -61986948 + AT_rich Low_complexity Low_complexity 1 34 0 2387 49 0 7 chr6 127292719 127293031 -61986523 - AluY SINE Alu 0 310 1 1192 278 92 20 chr6 127293034 127293506 -61986048 + MLT1H LTR MaLR 35 567 0 243 0 0 0 chr6 127293626 127293653 -61985901 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 266 329 116 13 chr6 127294653 127294878 -61984676 - L2 LINE L2 -239 3074 2827 213 211 0 0 chr6 127294911 127294968 -61984586 + (TA)n Simple_repeat Simple_repeat 2 58 0 199 213 27 0 chr6 127295143 127295218 -61984336 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 21 0 0 0 chr6 127295526 127295547 -61984007 + AT_rich Low_complexity Low_complexity 1 21 0 192 40 0 0 chr6 127295604 127295629 -61983925 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 302 329 21 14 chr6 127295674 127295814 -61983740 - HAL1b LINE L1 -703 645 505 1809 222 8 3 chr6 127295841 127296193 -61983361 + MLT1A1 LTR MaLR 12 365 0 345 279 7 22 chr6 127296215 127296351 -61983203 - HAL1b LINE L1 -897 451 318 7407 33 0 11 chr6 127296660 127297641 -61981913 + L1PA5 LINE L1 5184 6154 0 25 0 0 0 chr6 127299284 127299309 -61980245 + AT_rich Low_complexity Low_complexity 1 25 0 11989 81 15 2 chr6 127299602 127302000 -61977554 + L1PA7 LINE L1 3692 6120 -34 798 329 78 19 chr6 127302390 127302761 -61976793 + L3 LINE CR1 1041 1433 -144 323 234 78 43 chr6 127302798 127302939 -61976615 + MIR SINE MIR 73 218 -44 1898 147 137 13 chr6 127302951 127303332 -61976222 + MSTA LTR MaLR 1 428 0 369 287 20 0 chr6 127303588 127303689 -61975865 + MER33 DNA MER1_type 33 135 -189 219 297 58 29 chr6 127303691 127303829 -61975725 - L2 LINE L2 -432 2882 2741 321 255 61 126 chr6 127304047 127304278 -61975276 - L2 LINE L2 -723 2591 2376 908 185 26 57 chr6 127304348 127304575 -61974979 - MER96B DNA MER1_type? 0 417 198 29 70 0 0 chr6 127304619 127304676 -61974878 + AT_rich Low_complexity Low_complexity 1 57 0 209 301 71 18 chr6 127304706 127304819 -61974735 - MER91C DNA MER1_type -21 119 1 254 275 22 11 chr6 127304931 127305022 -61974532 + (CATATA)n Simple_repeat Simple_repeat 4 95 0 339 113 0 0 chr6 127305022 127305075 -61974479 + (GA)n Simple_repeat Simple_repeat 2 54 0 537 329 81 14 chr6 127305093 127305315 -61974239 - MIR SINE MIR -4 258 22 22 0 0 0 chr6 127305452 127305474 -61974080 + AT_rich Low_complexity Low_complexity 1 22 0 956 187 83 35 chr6 127306024 127306395 -61973159 - L1MD2 LINE L1 -274 5968 5494 * 1662 231 40 0 chr6 127306391 127306767 -61972787 + L1MD2 LINE L1 5947 6337 -22 32 43 0 0 chr6 127307002 127307048 -61972506 + AT_rich Low_complexity Low_complexity 1 46 0 202 139 23 0 chr6 127307195 127307238 -61972316 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2115 163 11 0 chr6 127307892 127308260 -61971294 + L1PA12 LINE L1 4063 4434 -1712 1613 165 76 31 chr6 127308260 127308617 -61970937 - THE1C LTR MaLR 0 375 3 9271 143 7 41 chr6 127308618 127310248 -61969306 - THE1C-int LTR MaLR -2 1578 4 1703 156 63 36 chr6 127310251 127310616 -61968938 - THE1C LTR MaLR 0 375 1 5398 106 73 1 chr6 127310616 127312294 -61967260 + L1PA12 LINE L1 4430 6167 -1 2093 61 7 41 chr6 127312296 127312639 -61966915 + AluY SINE Alu 1 333 0 692 131 0 0 chr6 127312867 127312966 -61966588 + U6 snRNA snRNA 1 99 -8 1786 210 77 5 chr6 127312975 127313414 -61966140 + L1P LINE L1 2128 2598 -3548 * 5173 131 48 20 chr6 127313402 127313759 -61965795 + L1PA15 LINE L1 5128 5473 -692 2127 113 0 3 chr6 127313759 127314060 -61965494 + AluY SINE Alu 1 300 -11 5173 131 48 20 chr6 127314060 127314713 -61964841 + L1PA15 LINE L1 5473 6159 -6 38 75 0 0 chr6 127314714 127314794 -61964760 + AT_rich Low_complexity Low_complexity 1 80 0 192 111 0 0 chr6 127314900 127314936 -61964618 + (T)n Simple_repeat Simple_repeat 1 36 0 192 182 0 0 chr6 127315232 127315276 -61964278 + T-rich Low_complexity Low_complexity 1 44 0 5413 148 48 7 chr6 127315277 127316239 -61963315 - L1MA8 LINE L1 -3 6288 5282 195 100 0 0 chr6 127316239 127316269 -61963285 + (TTG)n Simple_repeat Simple_repeat 1 30 0 5413 148 48 7 chr6 127316269 127316300 -61963254 - L1MA8 LINE L1 -1009 5282 5254 2006 105 85 26 chr6 127316306 127316648 -61962906 + THE1B LTR MaLR 3 364 0 10979 103 22 3 chr6 127316648 127318199 -61961355 + THE1B-int LTR MaLR 1 1580 0 1725 117 142 35 chr6 127318204 127318520 -61961034 + THE1B LTR MaLR 15 364 0 2552 148 2 18 chr6 127318521 127318959 -61960595 - L1MA8 LINE L1 -893 5253 4823 1064 270 32 58 chr6 127319410 127319679 -61959875 + L1MEc LINE L1 1501 1751 -4645 1029 222 0 0 chr6 127319679 127319886 -61959668 + MER6B DNA MER2_type 2 208 -2 1064 270 32 58 chr6 127319886 127320149 -61959405 + L1MEc LINE L1 1751 2019 -4377 1010 208 35 9 chr6 127320846 127321072 -61958482 - MER96B DNA MER1_type? -182 235 4 195 42 0 0 chr6 127321137 127321161 -61958393 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1910 160 51 0 chr6 127321948 127322279 -61957275 + MER7A DNA MER2_type 1 346 0 251 234 9 37 chr6 127324609 127324716 -61954838 + (TGAA)n Simple_repeat Simple_repeat 4 107 0 426 357 52 5 chr6 127326176 127326386 -61953168 - MIR SINE MIR -12 250 31 25 0 0 0 chr6 127328584 127328609 -61950945 + AT_rich Low_complexity Low_complexity 1 25 0 290 255 83 83 chr6 127328958 127329115 -61950439 - MIR3 SINE MIR -16 192 36 303 381 53 19 chr6 127329143 127329408 -61950146 - L2 LINE L2 -1057 2257 1984 235 216 105 92 chr6 127329440 127329593 -61949961 + L2 LINE L2 1990 2144 -1170 1372 152 66 8 chr6 127329594 127329851 -61949703 - L1PA16 LINE L1 0 6166 5895 43 92 0 0 chr6 127329912 127330032 -61949522 + AT_rich Low_complexity Low_complexity 1 120 0 3172 143 70 3 chr6 127330033 127330606 -61948948 - L1PA15 LINE L1 -8 6157 5547 539 301 79 15 chr6 127330613 127330879 -61948675 + L2 LINE L2 2131 2413 -901 181 222 20 141 chr6 127330940 127331039 -61948515 - L2 LINE L2 -193 3079 2993 641 336 87 55 chr6 127331061 127331616 -61947938 + L2 LINE L2 2443 3043 -270 2245 85 3 0 chr6 127331616 127331910 -61947644 - AluY SINE Alu -5 306 12 641 336 87 55 chr6 127331910 127332098 -61947456 + L2 LINE L2 3043 3223 -90 2313 81 0 0 chr6 127333017 127333312 -61946242 + AluY SINE Alu 1 295 -16 1020 30 0 38 chr6 127334209 127334342 -61945212 - L1PA3 LINE L1 -1 6154 6027 1085 184 14 0 chr6 127334528 127334746 -61944808 + L1MA5A LINE L1 6073 6293 -4 207 311 75 47 chr6 127335445 127335551 -61944003 + L2 LINE L2 3182 3290 -23 26 30 0 0 chr6 127335683 127335716 -61943838 + AT_rich Low_complexity Low_complexity 1 33 0 1891 178 68 12 chr6 127336951 127337351 -61942203 - L1MB3 LINE L1 0 6183 5762 471 346 11 5 chr6 127337554 127337739 -61941815 + MIR SINE MIR 43 228 -34 332 322 15 18 chr6 127338253 127338399 -61941155 - MIR3 SINE MIR -7 201 57 28 0 0 0 chr6 127338715 127338743 -61940811 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 127340051 127340080 -61939474 + AT_rich Low_complexity Low_complexity 1 29 0 2188 121 0 0 chr6 127340080 127340386 -61939168 - AluSx SINE Alu -6 306 1 26 0 0 0 chr6 127341406 127341432 -61938122 + AT_rich Low_complexity Low_complexity 1 26 0 678 337 99 19 chr6 127341523 127341986 -61937568 - L2 LINE L2 -7 3306 2807 27 0 0 0 chr6 127342080 127342107 -61937447 + AT_rich Low_complexity Low_complexity 1 27 0 304 292 15 29 chr6 127342501 127342638 -61936916 + LTR16C LTR ERVL 357 491 0 341 312 10 0 chr6 127343031 127343164 -61936390 - L1MB3 LINE L1 -338 5783 5647 1425 173 15 33 chr6 127343166 127343495 -61936059 + MER33 DNA MER1_type 2 324 0 228 271 153 0 chr6 127343506 127343591 -61935963 + MER5A DNA MER1_type 4 101 -88 31 0 0 0 chr6 127344322 127344353 -61935201 + AT_rich Low_complexity Low_complexity 1 31 0 2402 77 0 0 chr6 127344856 127345153 -61934401 - AluY SINE Alu -14 297 1 2340 82 3 0 chr6 127346986 127347280 -61932274 + AluY SINE Alu 6 300 -11 239 228 0 0 chr6 127347625 127347682 -61931872 + CT-rich Low_complexity Low_complexity 2 58 0 27 29 0 0 chr6 127348278 127348312 -61931242 + AT_rich Low_complexity Low_complexity 1 34 0 406 264 56 56 chr6 127349082 127349260 -61930294 + MER5B DNA MER1_type 1 178 0 282 73 0 0 chr6 127349543 127349584 -61929970 + (CA)n Simple_repeat Simple_repeat 2 42 0 393 296 56 19 chr6 127349663 127349933 -61929621 + L1M4 LINE L1 2172 2451 -3695 263 323 32 11 chr6 127349939 127350032 -61929522 - MER5B DNA MER1_type -82 96 2 536 282 76 54 chr6 127350055 127350502 -61929052 + L1M4 LINE L1 4359 4815 -1331 271 254 91 45 chr6 127350761 127350871 -61928683 - L2 LINE L2 0 3313 3199 186 43 0 0 chr6 127350879 127350902 -61928652 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 279 299 52 0 chr6 127352929 127353026 -61926528 - MIR3 SINE MIR -6 202 101 475 293 88 0 chr6 127354148 127354329 -61925225 - MIR SINE MIR -9 253 57 1847 87 0 62 chr6 127355449 127355725 -61923829 + AluY SINE Alu 50 308 -3 236 75 0 25 chr6 127355730 127355770 -61923784 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 254 104 0 42 chr6 127356306 127356354 -61923200 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 4704 190 71 15 chr6 127356358 127356826 -61922728 - Tigger6a DNA MER2_type -514 1083 643 2078 87 13 36 chr6 127356826 127357135 -61922419 - AluY SINE Alu -9 302 1 4704 190 71 15 chr6 127357135 127357685 -61921869 - Tigger6a DNA MER2_type -954 643 8 25 0 0 0 chr6 127357731 127357756 -61921798 + AT_rich Low_complexity Low_complexity 1 25 0 1781 216 12 0 chr6 127359649 127359991 -61919563 + MER7A DNA MER2_type 3 346 0 9485 208 61 37 chr6 127360051 127366467 -61913087 + L1MC1 LINE L1 2 6613 0 742 264 59 38 chr6 127366811 127367056 -61912498 + L1M4 LINE L1 4688 4926 -1220 2912 143 21 12 chr6 127367056 127367540 -61912014 + LTR45B LTR ERV1 2 489 0 742 264 59 38 chr6 127367540 127367768 -61911786 + L1M4 LINE L1 4926 5171 -975 2723 148 51 1 chr6 127367862 127368655 -61910899 - L1PBa LINE L1 -3593 3269 2438 * 5610 189 174 5 chr6 127368653 127370015 -61909539 - L1PBa LINE L1 -4643 2220 629 3600 140 12 5 chr6 127370015 127370815 -61908739 + L1PB1 LINE L1 4988 5791 -360 316 167 0 118 chr6 127370843 127370945 -61908609 - L1MC4 LINE L1 -1340 6702 6613 218 217 0 0 chr6 127370950 127370996 -61908558 + (TA)n Simple_repeat Simple_repeat 2 47 0 308 233 0 87 chr6 127371004 127371107 -61908447 + L1MC4 LINE L1 6614 6707 -1335 * 343 211 70 53 chr6 127371062 127371153 -61908401 - L1MC4 LINE L1 -1339 6703 6608 2250 120 11 21 chr6 127371153 127371527 -61908027 + L1PB1 LINE L1 5782 6151 0 343 211 70 53 chr6 127371527 127371549 -61908005 - L1MC4 LINE L1 -1434 6608 6588 216 97 0 0 chr6 127371819 127371850 -61907704 + (TG)n Simple_repeat Simple_repeat 2 32 0 419 67 17 0 chr6 127372109 127372169 -61907385 - MADE1 DNA Mariner -19 61 1 329 152 30 0 chr6 127372744 127372810 -61906744 - Charlie4 DNA MER1_type -13 1948 1881 22 35 0 0 chr6 127376433 127376462 -61903092 + AT_rich Low_complexity Low_complexity 1 29 0 214 394 109 24 chr6 127376589 127376754 -61902800 + MIR3 SINE MIR 7 185 -23 357 297 48 0 chr6 127376951 127377100 -61902454 + MIR SINE MIR 41 195 -62 191 352 103 28 chr6 127378508 127378653 -61900901 - L2 LINE L2 -1 3271 3116 297 197 0 0 chr6 127379010 127379071 -61900483 + (TA)n Simple_repeat Simple_repeat 1 61 0 264 109 0 0 chr6 127379071 127379117 -61900437 + LTR66 LTR ERVL 394 439 -171 279 0 0 0 chr6 127379119 127379150 -61900404 + (TA)n Simple_repeat Simple_repeat 2 32 0 2012 125 81 0 chr6 127379420 127379765 -61899789 + MLT1B LTR MaLR 18 390 0 1956 139 126 26 chr6 127380825 127381214 -61898340 - MSTA LTR MaLR 0 428 1 333 304 40 61 chr6 127381555 127381703 -61897851 + MLT2F LTR ERVL 1 145 -518 492 283 42 42 chr6 127381712 127381903 -61897651 + MLT1E3 LTR MaLR 53 243 -381 28 29 0 0 chr6 127382090 127382125 -61897429 + AT_rich Low_complexity Low_complexity 1 35 0 281 305 99 53 chr6 127382247 127382378 -61897176 - L2 LINE L2 0 3272 3136 5274 89 10 9 chr6 127382590 127383362 -61896192 - L1PA8 LINE L1 -1123 5023 4251 6864 63 14 3 chr6 127383362 127384502 -61895052 + L1PA8 LINE L1 5020 6170 -2 1224 217 66 54 chr6 127384503 127384838 -61894716 + Charlie2 DNA MER1_type 2142 2471 -391 1874 147 35 0 chr6 127384838 127385124 -61894430 + AluSx SINE Alu 1 296 -16 1224 217 66 54 chr6 127385124 127385163 -61894391 + Charlie2 DNA MER1_type 2471 2508 -354 1197 208 13 115 chr6 127385163 127385624 -61893930 + MLT2D LTR ERVL 1 414 0 1224 217 66 54 chr6 127385624 127385805 -61893749 + Charlie2 DNA MER1_type 2508 2705 -157 938 242 10 0 chr6 127385806 127386000 -61893554 - MER58A DNA MER1_type -1 223 28 493 294 0 6 chr6 127386044 127386204 -61893350 + Charlie2 DNA MER1_type 2704 2862 0 358 368 111 36 chr6 127386270 127387245 -61892309 - L2 LINE L2 -350 2964 1917 359 211 13 13 chr6 127387928 127388004 -61891550 + MLT1I LTR MaLR 310 385 -24 315 49 0 0 chr6 127388144 127388185 -61891369 + (CA)n Simple_repeat Simple_repeat 2 42 0 220 365 95 24 chr6 127388273 127388484 -61891070 - L2 LINE L2 -2413 901 676 1055 224 123 19 chr6 127389347 127389664 -61889890 - MLT1D LTR MaLR -6 499 150 245 343 48 100 chr6 127389680 127390059 -61889495 + L2 LINE L2 2883 3241 -31 363 213 149 81 chr6 127390059 127390294 -61889260 - MER112 DNA MER1_type -8 252 2 253 0 0 0 chr6 127391991 127392023 -61887531 - L1PA6 LINE L1 -7 6147 6116 522 114 0 0 chr6 127392610 127392689 -61886865 + (TA)n Simple_repeat Simple_repeat 1 79 0 1126 266 29 29 chr6 127392918 127393260 -61886294 - MER93a LTR ERV1 0 402 61 257 263 21 32 chr6 127393352 127393447 -61886107 + L1MC4 LINE L1 6610 6703 -1339 21 0 0 0 chr6 127393447 127393468 -61886086 + AT_rich Low_complexity Low_complexity 1 21 0 357 297 48 0 chr6 127395117 127395266 -61884288 - MIR SINE MIR -62 146 41 209 386 131 14 chr6 127395463 127395608 -61883946 - MIR3 SINE MIR -23 185 24 17539 33 4 2 chr6 127396065 127398958 -61880596 + L1PA5 LINE L1 3259 6154 0 554 261 171 6 chr6 127399205 127399381 -61880173 + MIR SINE MIR 57 261 -1 460 365 59 21 chr6 127400216 127400454 -61879100 + L2 LINE L2 1093 1339 -1975 1252 253 86 60 chr6 127400487 127401101 -61878453 + L1ME3 LINE L1 5492 6148 -22 * 4034 222 44 13 chr6 127401098 127402068 -61877486 - L1MD2 LINE L1 -10 6349 5350 538 285 129 5 chr6 127402144 127402330 -61877224 + MIR SINE MIR 42 250 -12 595 265 87 15 chr6 127402419 127402615 -61876939 - MIR SINE MIR -38 224 15 1291 349 144 26 chr6 127402616 127403846 -61875708 + L2 LINE L2 1413 2787 -527 23 0 0 0 chr6 127404105 127404128 -61875426 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 127404671 127404693 -61874861 + AT_rich Low_complexity Low_complexity 1 22 0 30 45 0 0 chr6 127404711 127404755 -61874799 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr6 127405716 127405753 -61873801 + AT_rich Low_complexity Low_complexity 1 37 0 1394 223 43 38 chr6 127406626 127406998 -61872556 - MLT1A2 LTR MaLR 0 374 1 593 306 118 14 chr6 127407219 127407702 -61871852 - L1ME LINE L1 -372 5790 5258 185 178 22 0 chr6 127407744 127407789 -61871765 + (TG)n Simple_repeat Simple_repeat 1 46 0 1630 188 42 18 chr6 127407806 127408141 -61871413 + MER2 DNA MER2_type 1 343 -1 4647 119 1 6 chr6 127408482 127409198 -61870356 - L1MA2 LINE L1 0 6304 5592 202 154 0 26 chr6 127409262 127409301 -61870253 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 1882 265 25 37 chr6 127409303 127409972 -61869582 - L1ME1 LINE L1 -26 6140 5480 2410 177 14 0 chr6 127410574 127411020 -61868534 + L1MB2 LINE L1 5703 6154 -17 193 333 103 51 chr6 127412657 127412813 -61866741 + MIR SINE MIR 28 191 -71 377 287 42 28 chr6 127413116 127413259 -61866295 - MIR3 SINE MIR -54 154 10 2914 243 39 63 chr6 127413656 127414757 -61864797 + L1MD2 LINE L1 3533 4607 -1539 2842 237 59 56 chr6 127414844 127415001 -61864553 + L1MD2 LINE L1 4985 5140 -1219 2667 81 16 11 chr6 127415001 127415373 -61864181 - THE1C LTR MaLR -1 374 1 2842 237 59 56 chr6 127415373 127416373 -61863181 + L1MD2 LINE L1 5140 6139 -220 2146 130 0 0 chr6 127416373 127416665 -61862889 + AluSg SINE Alu 1 292 -18 2842 237 59 56 chr6 127416665 127416804 -61862750 + L1MD2 LINE L1 6139 6276 -83 1462 236 44 38 chr6 127417056 127417783 -61861771 + L1ME2 LINE L1 4068 5026 -1120 2744 214 32 62 chr6 127417792 127418597 -61860957 + L1ME2 LINE L1 5375 6155 -9 220 278 0 19 chr6 127418906 127418960 -61860594 + MIR SINE MIR 19 71 -137 183 156 0 0 chr6 127419507 127419539 -61860015 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 277 322 33 44 chr6 127419602 127419692 -61859862 - L2 LINE L2 -1 3271 3183 285 323 38 7 chr6 127419798 127419919 -61859635 - MIR SINE MIR -81 127 4 291 357 172 9 chr6 127420193 127420636 -61858918 + L2 LINE L2 1753 2267 -1047 225 0 0 0 chr6 127421855 127421880 -61857674 + (A)n Simple_repeat Simple_repeat 1 25 0 653 243 6 30 chr6 127422374 127422543 -61857011 - HERVL74 LTR ERVL -3615 2070 1906 615 285 98 25 chr6 127422557 127422831 -61856723 - LTR52 LTR ERVL -127 294 1 302 113 0 19 chr6 127424461 127424514 -61855040 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 30 45 0 0 chr6 127424947 127424991 -61854563 + AT_rich Low_complexity Low_complexity 1 44 0 1587 176 0 18 chr6 127426253 127426531 -61853023 + AluJb SINE Alu 1 273 -39 26 64 0 0 chr6 127427113 127427160 -61852394 + AT_rich Low_complexity Low_complexity 1 47 0 1968 227 65 36 chr6 127427164 127427230 -61852324 - L1ME2 LINE L1 -27 6137 6074 820 255 9 19 chr6 127427230 127427442 -61852112 - MER63A DNA MER1_type 0 210 1 1968 227 65 36 chr6 127427442 127427962 -61851592 - L1ME2 LINE L1 -90 6074 5534 30 27 0 0 chr6 127429375 127429412 -61850142 + AT_rich Low_complexity Low_complexity 1 37 0 2209 101 3 0 chr6 127429422 127429720 -61849834 + AluSp SINE Alu 1 299 -14 458 293 46 8 chr6 127430101 127430340 -61849214 + L1M4 LINE L1 3293 3540 -2606 343 183 43 21 chr6 127430364 127430457 -61849097 + L1M4 LINE L1 3604 3698 -2448 5927 60 18 1 chr6 127430510 127431287 -61848267 + L1PA7 LINE L1 5365 6154 0 758 291 73 28 chr6 127431466 127432003 -61847551 + L1M4 LINE L1 3869 4429 -1717 189 107 0 0 chr6 127432018 127432046 -61847508 + (CA)n Simple_repeat Simple_repeat 2 29 0 933 273 121 52 chr6 127432056 127432462 -61847092 + L1MDa LINE L1 414 847 -5693 2976 188 110 21 chr6 127432470 127433268 -61846286 + L1MDa LINE L1 1305 2173 -4367 1721 119 22 114 chr6 127433389 127433758 -61845796 - MER1B DNA MER1_type 0 337 3 222 245 0 19 chr6 127434401 127434454 -61845100 + (CATA)n Simple_repeat Simple_repeat 1 52 0 643 298 18 6 chr6 127435428 127435841 -61843713 + LTR16C LTR ERVL 1 491 0 201 301 86 49 chr6 127436259 127436422 -61843132 - L2 LINE L2 -350 2964 2796 2116 113 20 0 chr6 127436462 127436754 -61842800 + AluSx SINE Alu 1 298 -14 25 31 0 0 chr6 127437051 127437083 -61842471 + AT_rich Low_complexity Low_complexity 1 32 0 323 270 8 48 chr6 127437150 127437276 -61842278 + L1MC5 LINE L1 7806 7926 -35 921 254 42 71 chr6 127437360 127437742 -61841812 + LTR16A1 LTR ERVL 81 451 -6 890 92 0 0 chr6 127438637 127438757 -61840797 + AluSg/x SINE Alu 149 268 -44 180 0 0 0 chr6 127438772 127438792 -61840762 + (GA)n Simple_repeat Simple_repeat 2 21 0 225 65 0 0 chr6 127439559 127439590 -61839964 + (TG)n Simple_repeat Simple_repeat 2 32 0 237 167 13 39 chr6 127439605 127439683 -61839871 + (TA)n Simple_repeat Simple_repeat 1 76 0 22 0 0 0 chr6 127440694 127440716 -61838838 + AT_rich Low_complexity Low_complexity 1 22 0 1309 221 19 0 chr6 127440755 127441017 -61838537 + L1MDa LINE L1 17 283 -6257 575 209 9 0 chr6 127441211 127441316 -61838238 - L1MDa LINE L1 -6276 264 159 * 1858 228 68 45 chr6 127441315 127441537 -61838017 + L1MDa LINE L1 2520 2736 -3804 2150 142 28 6 chr6 127441537 127441890 -61837664 - THE1B LTR MaLR 0 364 4 1858 228 68 45 chr6 127441890 127442423 -61837131 + L1MDa LINE L1 2736 3292 -3248 21 0 0 0 chr6 127442454 127442475 -61837079 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 127442598 127442629 -61836925 + AT_rich Low_complexity Low_complexity 1 31 0 38 51 0 0 chr6 127442671 127442730 -61836824 + AT_rich Low_complexity Low_complexity 1 59 0 840 212 47 58 chr6 127442867 127443211 -61836343 + L1MDa LINE L1 3415 3754 -2786 7047 208 18 0 chr6 127493214 127495588 -61783966 + L1PA15 LINE L1 3793 6165 0 697 214 43 0 chr6 127495614 127495801 -61783753 + L1M4 LINE L1 4969 5163 -983 23 0 0 0 chr6 127495892 127495915 -61783639 + AT_rich Low_complexity Low_complexity 1 23 0 240 351 18 9 chr6 127496031 127496145 -61783409 - MIR SINE MIR -70 138 24 698 294 25 0 chr6 127496382 127496579 -61782975 + MIR SINE MIR 57 258 -4 357 211 128 30 chr6 127498069 127498202 -61781352 + MIR SINE MIR 53 198 -64 37 69 0 0 chr6 127498295 127498367 -61781187 + AT_rich Low_complexity Low_complexity 1 72 0 427 364 61 40 chr6 127498521 127498999 -61780555 - L2 LINE L2 -1043 2271 1784 237 342 86 43 chr6 127499485 127499672 -61779882 + L3b LINE CR1 1303 1497 -86 351 0 0 0 chr6 127500024 127500063 -61779491 + (TG)n Simple_repeat Simple_repeat 2 40 0 29 47 0 0 chr6 127502862 127502905 -61776649 + AT_rich Low_complexity Low_complexity 1 43 0 316 182 30 0 chr6 127504301 127504367 -61775187 - AluYb8 SINE Alu -7 301 234 335 388 0 0 chr6 127504413 127504529 -61775025 - L2 LINE L2 -8 3264 3149 350 297 11 0 chr6 127505795 127505886 -61773668 - MER81 DNA DNA -1 113 22 832 361 32 14 chr6 127505973 127506474 -61773080 - L2 LINE L2 -340 2974 2465 29 0 0 0 chr6 127507141 127507170 -61772384 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chr6 127507962 127508013 -61771541 + AT_rich Low_complexity Low_complexity 1 51 0 23 54 0 0 chr6 127508327 127508364 -61771190 + AT_rich Low_complexity Low_complexity 1 37 0 254 170 21 0 chr6 127509015 127509062 -61770492 + L2 LINE L2 3266 3313 0 355 302 10 0 chr6 127509174 127509270 -61770284 + MIR SINE MIR 57 153 -109 1774 170 12 77 chr6 127509571 127509988 -61769566 + MLT1B LTR MaLR 1 390 0 28 29 0 0 chr6 127510280 127510315 -61769239 + AT_rich Low_complexity Low_complexity 1 35 0 37 39 0 0 chr6 127510456 127510507 -61769047 + AT_rich Low_complexity Low_complexity 1 51 0 1680 147 0 7 chr6 127510959 127511231 -61768323 - AluSq SINE Alu -1 312 43 477 50 0 0 chr6 127511440 127511500 -61768054 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 323 133 0 0 chr6 127513156 127513201 -61766353 + Alu SINE Alu 1 45 -257 1245 98 0 0 chr6 127513201 127513364 -61766190 + AluSg/x SINE Alu 137 299 -13 207 0 0 0 chr6 127513437 127513460 -61766094 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 23 68 0 0 chr6 127514560 127514604 -61764950 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr6 127514690 127514711 -61764843 + AT_rich Low_complexity Low_complexity 1 21 0 210 200 50 25 chr6 127514878 127514958 -61764596 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 433 347 73 7 chr6 127516062 127516362 -61763192 - L1ME LINE L1 -312 5809 5490 442 301 7 22 chr6 127516672 127516808 -61762746 + MIR SINE MIR 19 152 -110 803 316 28 8 chr6 127516969 127517219 -61762335 + MIR SINE MIR 7 261 -1 1745 84 4 21 chr6 127519859 127520097 -61759457 + AluSp SINE Alu 73 306 -7 233 267 17 0 chr6 127522249 127522309 -61757245 - MER33 DNA MER1_type -234 90 30 323 268 9 18 chr6 127524458 127524570 -61754984 + (CA)n Simple_repeat Simple_repeat 1 111 0 364 325 57 13 chr6 127524652 127524809 -61754745 + MIR SINE MIR 91 254 -8 13839 150 34 10 chr6 127525089 127525493 -61754061 - Tigger1 DNA MER2_type 0 2418 2025 2330 158 30 47 chr6 127525493 127525923 -61753631 + MSTB LTR MaLR 4 426 0 13839 150 34 10 chr6 127525923 127527827 -61751727 - Tigger1 DNA MER2_type -393 2025 50 6218 88 2 23 chr6 127527827 127528965 -61750589 + L1PA13 LINE L1 5022 6151 -12 13839 150 34 10 chr6 127528965 127529016 -61750538 - Tigger1 DNA MER2_type -2368 50 2 43 20 0 0 chr6 127529016 127529066 -61750488 + AT_rich Low_complexity Low_complexity 1 50 0 1509 203 122 3 chr6 127529782 127530080 -61749474 + MSTD LTR MaLR 1 349 -47 1909 131 0 7 chr6 127530080 127530354 -61749200 - AluSx SINE Alu -8 304 33 1509 203 122 3 chr6 127530354 127530409 -61749145 + MSTD LTR MaLR 349 396 0 6787 226 61 41 chr6 127530411 127530728 -61748826 + MSTD-int LTR MaLR 2 311 -1424 2126 133 0 7 chr6 127530728 127531037 -61748517 - AluSg1 SINE Alu -2 307 1 6787 226 61 41 chr6 127531037 127532292 -61747262 + MSTD-int LTR MaLR 311 1613 -122 2613 118 3 0 chr6 127532292 127532664 -61746890 - THE1C LTR MaLR 0 375 3 6787 226 61 41 chr6 127532664 127532790 -61746764 + MSTD-int LTR MaLR 1613 1735 0 1407 210 133 11 chr6 127532790 127533143 -61746411 + MSTD LTR MaLR 1 396 0 2112 194 56 2 chr6 127533545 127533988 -61745566 - MLT1C LTR MaLR 0 467 1 23 54 0 0 chr6 127534211 127534248 -61745306 + AT_rich Low_complexity Low_complexity 1 37 0 298 275 147 0 chr6 127534251 127534360 -61745194 + L2 LINE L2 3182 3306 -7 21 0 0 0 chr6 127535128 127535149 -61744405 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 127535524 127535558 -61743996 + AT_rich Low_complexity Low_complexity 1 34 0 364 248 54 69 chr6 127536264 127536440 -61743114 + MIR3 SINE MIR 6 180 -28 377 335 95 14 chr6 127538134 127538355 -61741199 + MIR SINE MIR 7 245 -17 23 54 0 0 chr6 127538655 127538692 -61740862 + AT_rich Low_complexity Low_complexity 1 37 0 856 159 49 2 chr6 127539060 127539236 -61740318 + L1MA4 LINE L1 5832 6016 -284 388 167 44 0 chr6 127539245 127539335 -61740219 + L1MB4 LINE L1 6086 6179 -1 1442 259 55 70 chr6 127540381 127540727 -61738827 + L1M4 LINE L1 2805 3155 -2991 1587 148 74 0 chr6 127540727 127540983 -61738571 + AluSx SINE Alu 1 275 -37 1442 259 55 70 chr6 127540983 127541805 -61737749 + L1M4 LINE L1 3155 3955 -2191 2255 104 0 0 chr6 127541816 127542105 -61737449 + AluSx SINE Alu 1 289 -23 451 219 156 92 chr6 127542120 127542251 -61737303 + HAL1 LINE L1 960 1081 -1426 306 0 0 0 chr6 127542251 127542285 -61737269 + (TA)n Simple_repeat Simple_repeat 1 34 0 451 219 156 92 chr6 127542285 127542532 -61737022 + HAL1 LINE L1 1081 1362 -1145 337 264 104 38 chr6 127542786 127542998 -61736556 + MER112 DNA MER1_type 29 254 -6 799 195 25 0 chr6 127544193 127544352 -61735202 - MER3 DNA MER1_type 0 209 47 2132 118 64 17 chr6 127544460 127544806 -61734748 - THE1B LTR MaLR -2 362 1 28 0 0 0 chr6 127544963 127544991 -61734563 + AT_rich Low_complexity Low_complexity 1 28 0 2045 121 10 3 chr6 127545269 127545558 -61733996 + AluSx SINE Alu 1 291 -21 24 0 0 0 chr6 127545558 127545582 -61733972 + AT_rich Low_complexity Low_complexity 1 24 0 201 295 161 27 chr6 127545606 127545718 -61733836 - L2 LINE L2 -4 3268 3142 354 255 43 57 chr6 127545931 127546072 -61733482 - MIR SINE MIR -50 212 74 4891 187 68 74 chr6 127546147 127546732 -61732822 - Charlie1a DNA MER1_type -1338 1423 836 2445 158 47 0 chr6 127546732 127547137 -61732417 + MSTB LTR MaLR 1 424 -2 4891 187 68 74 chr6 127547137 127547981 -61731573 - Charlie1a DNA MER1_type -1925 836 2 21 0 0 0 chr6 127548127 127548148 -61731406 + AT_rich Low_complexity Low_complexity 1 21 0 1359 232 10 46 chr6 127548166 127548554 -61731000 + MLT1A2 LTR MaLR 1 374 0 298 202 43 5 chr6 127552456 127552542 -61727012 - MLT1I LTR MaLR 0 595 318 338 296 79 59 chr6 127552931 127553151 -61726403 - L1MEd LINE L1 -1127 1363 1070 2314 94 0 0 chr6 127553151 127553460 -61726094 - AluY SINE Alu -2 309 1 338 296 79 59 chr6 127553460 127553487 -61726067 - L1MEd LINE L1 -1420 1070 1045 5067 132 8 29 chr6 127553642 127554474 -61725080 - L1MA4A LINE L1 0 6303 5354 419 402 47 6 chr6 127554824 127554993 -61724561 - MER91A DNA MER1_type -3 193 18 263 296 25 49 chr6 127555085 127555247 -61724307 + L2 LINE L2 1889 2046 -1268 21 36 0 0 chr6 127556423 127556451 -61723103 + AT_rich Low_complexity Low_complexity 1 28 0 740 300 71 0 chr6 127557502 127557769 -61721785 + MER102b DNA MER1_type 39 324 -17 420 299 59 33 chr6 127560384 127560700 -61718854 - L2 LINE L2 -213 3059 2739 1944 174 27 35 chr6 127560708 127561165 -61718389 - MLT1B LTR MaLR -8 459 1 567 359 62 34 chr6 127561387 127561805 -61717749 - L2 LINE L2 -1782 1532 1103 834 92 0 53 chr6 127562083 127562214 -61717340 - AluSp/q SINE Alu 0 313 190 1885 108 4 30 chr6 127562214 127562483 -61717071 - AluSp SINE Alu -51 262 1 468 0 0 0 chr6 127562856 127562908 -61716646 + (CA)n Simple_repeat Simple_repeat 1 52 0 1232 244 65 36 chr6 127564765 127565193 -61714361 + MER39 LTR ERV1 265 585 0 187 208 62 0 chr6 127565951 127565999 -61713555 - L2 LINE L2 -467 2847 2797 304 278 44 0 chr6 127566264 127566354 -61713200 - MER113 DNA MER1_type? -423 98 5 201 39 0 0 chr6 127566706 127566732 -61712822 + (CA)n Simple_repeat Simple_repeat 1 26 0 1168 249 59 11 chr6 127567820 127568214 -61711340 + L1M4 LINE L1 2923 3352 -2794 192 77 0 0 chr6 127568214 127568240 -61711314 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1168 249 59 11 chr6 127568240 127568391 -61711163 + L1M4 LINE L1 3352 3494 -2652 657 294 31 10 chr6 127568414 127568707 -61710847 + L1M4 LINE L1 3239 3537 -2609 1879 191 22 113 chr6 127568714 127569217 -61710337 - MER88 LTR ERVL -7 457 1 312 204 10 25 chr6 127569224 127569320 -61710234 + L1M4 LINE L1 3540 3633 -2513 2031 229 49 21 chr6 127569386 127569954 -61709600 + L1M4 LINE L1 3627 4210 -1936 226 143 0 0 chr6 127569947 127569982 -61709572 - L1MC3 LINE L1 -1036 6749 6715 * 398 52 69 0 chr6 127569988 127570046 -61709508 - MER31B LTR ERV1 -397 69 8 1173 256 50 6 chr6 127570047 127570504 -61709050 + L1M4 LINE L1 4932 5413 -749 1026 193 20 0 chr6 127570506 127570703 -61708851 - MLT1D LTR MaLR 0 505 305 534 258 16 0 chr6 127570703 127570831 -61708723 + L1MC3 LINE L1 6592 6721 -1064 255 273 0 15 chr6 127570839 127570905 -61708649 + MLT1F1 LTR MaLR 47 111 -456 2949 172 55 2 chr6 127570905 127571482 -61708072 + L1MC3 LINE L1 7175 7782 -3 21 57 0 0 chr6 127571733 127571768 -61707786 + AT_rich Low_complexity Low_complexity 1 35 0 297 0 0 0 chr6 127572447 127572480 -61707074 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1896 152 7 0 chr6 127572488 127572785 -61706769 - AluSx SINE Alu -13 299 1 21 71 0 0 chr6 127573851 127573893 -61705661 + AT_rich Low_complexity Low_complexity 1 42 0 445 318 138 21 chr6 127574660 127575081 -61704473 + L2 LINE L2 1890 2359 -955 1801 275 55 6 chr6 127575089 127575558 -61703996 + MLT1G LTR MaLR 11 502 -88 396 304 170 13 chr6 127575595 127575907 -61703647 + L2 LINE L2 2457 2817 -497 602 176 0 61 chr6 127575928 127576059 -61703495 + Charlie5 DNA MER1_type 1 123 -2489 1855 170 21 3 chr6 127576063 127576445 -61703109 + Charlie5 DNA MER1_type 2236 2624 0 348 317 50 118 chr6 127576460 127576857 -61702697 + L2 LINE L2 2871 3240 -32 318 245 10 59 chr6 127577221 127577323 -61702231 + MIR SINE MIR 108 204 -58 497 280 213 24 chr6 127577403 127577610 -61701944 - MIR SINE MIR -15 247 2 269 405 6 0 chr6 127578118 127578286 -61701268 + (CA)n Simple_repeat Simple_repeat 2 170 0 25 0 0 0 chr6 127578396 127578421 -61701133 + AT_rich Low_complexity Low_complexity 1 25 0 1457 185 38 48 chr6 127578625 127578939 -61700615 + AluJb SINE Alu 1 311 -1 2200 120 0 3 chr6 127580739 127581048 -61698506 + AluSq SINE Alu 1 308 -5 496 200 15 15 chr6 127581048 127581178 -61698376 + GA-rich Low_complexity Low_complexity 1 130 0 191 163 0 23 chr6 127581168 127581211 -61698343 + G-rich Low_complexity Low_complexity 3 44 0 * 596 181 268 0 chr6 127581431 127581569 -61697985 + MER45A DNA AcHobo 1 175 -3 321 26 0 0 chr6 127581663 127581701 -61697853 + (TG)n Simple_repeat Simple_repeat 1 38 0 283 305 67 0 chr6 127581997 127582102 -61697452 + MIR SINE MIR 74 185 -77 308 145 0 16 chr6 127582176 127582238 -61697316 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 2511 41 0 3 chr6 127584158 127584453 -61695101 - AluY SINE Alu -17 294 1 24 0 0 0 chr6 127585509 127585533 -61694021 + AT_rich Low_complexity Low_complexity 1 24 0 183 237 13 132 chr6 127586388 127586464 -61693090 + L2 LINE L2 3242 3308 -5 21 0 0 0 chr6 127586751 127586772 -61692782 + AT_rich Low_complexity Low_complexity 1 21 0 257 183 17 0 chr6 127587161 127587221 -61692333 + (TA)n Simple_repeat Simple_repeat 1 61 0 546 269 14 28 chr6 127588022 127588163 -61691391 + L2 LINE L2 2524 2662 -652 496 244 87 143 chr6 127588210 127588306 -61691248 + L2 LINE L2 2923 3023 -290 2187 109 0 22 chr6 127588306 127588618 -61690936 - AluSx SINE Alu -7 305 1 496 244 87 143 chr6 127588618 127588708 -61690846 + L2 LINE L2 3023 3116 -197 216 0 0 0 chr6 127588708 127588732 -61690822 + (TTA)n Simple_repeat Simple_repeat 1 24 0 19223 54 5 0 chr6 127588733 127591951 -61687603 - L1PA5 LINE L1 -18 6136 2902 496 244 87 143 chr6 127591951 127592175 -61687379 + L2 LINE L2 3115 3313 0 530 297 98 28 chr6 127592620 127592977 -61686577 + L1ME3A LINE L1 4787 5168 -978 249 293 15 15 chr6 127593116 127593249 -61686305 + L1ME3A LINE L1 5315 5447 -2361 2187 213 27 21 chr6 127593255 127593772 -61685782 + L1MD3 LINE L1 7476 7995 0 326 279 177 66 chr6 127593768 127594208 -61685346 + L1ME3A LINE L1 5423 5911 -259 * 204 40 0 0 chr6 127594519 127594544 -61685010 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 32 57 0 0 chr6 127594696 127594749 -61684805 + AT_rich Low_complexity Low_complexity 1 53 0 1017 182 0 0 chr6 127594928 127595093 -61684461 - AluSg/x SINE Alu -11 301 137 201 333 158 0 chr6 127596739 127596853 -61682701 + L2 LINE L2 3181 3312 -1 22 0 0 0 chr6 127596854 127596876 -61682678 + AT_rich Low_complexity Low_complexity 1 22 0 342 0 0 0 chr6 127597145 127597183 -61682371 + (CA)n Simple_repeat Simple_repeat 2 39 0 2041 70 32 85 chr6 127599121 127599437 -61680117 + AluSq SINE Alu 1 299 -14 22 0 0 0 chr6 127602701 127602723 -61676831 + AT_rich Low_complexity Low_complexity 1 22 0 42683 36 21 1 chr6 127602827 127608855 -61670699 + L1PA2 LINE L1 2 6153 -2 401 361 47 6 chr6 127609844 127610013 -61669541 + L3 LINE CR1 1273 1448 -129 1763 149 29 7 chr6 127610142 127610443 -61669111 + AluJb SINE Alu 2 308 0 306 289 31 39 chr6 127610526 127610654 -61668900 - MIR SINE MIR -9 253 127 583 76 0 0 chr6 127611157 127611258 -61668296 - AluSg/x SINE Alu 0 306 206 268 250 0 0 chr6 127612190 127612250 -61667304 + Charlie8 DNA MER1_type 1357 1416 -1001 2094 189 26 24 chr6 127612586 127613047 -61666507 - L1MA10 LINE L1 -13 6321 5860 2185 117 0 3 chr6 127614175 127614483 -61665071 + AluSc SINE Alu 1 307 -2 3341 118 20 8 chr6 127614753 127615542 -61664012 - L1P4 LINE L1 -586 5575 4781 883 170 105 0 chr6 127616423 127616594 -61662960 - MER5A DNA MER1_type 0 189 1 773 242 69 9 chr6 127616918 127617296 -61662258 + Zaphod DNA AcHobo 3595 4031 0 405 0 0 0 chr6 127618161 127618206 -61661348 + (CA)n Simple_repeat Simple_repeat 2 46 0 3377 136 55 25 chr6 127619173 127619807 -61659747 - MER39B LTR ERV1 0 653 1 875 230 67 0 chr6 127620510 127620749 -61658805 + MIR SINE MIR 5 259 -3 207 0 0 0 chr6 127621263 127621286 -61658268 + (T)n Simple_repeat Simple_repeat 1 23 0 333 316 29 102 chr6 127622446 127622690 -61656864 - L2 LINE L2 -3 3269 3044 36 23 0 0 chr6 127624561 127624604 -61654950 + AT_rich Low_complexity Low_complexity 1 43 0 688 77 69 4 chr6 127624604 127625049 -61654505 + (TA)n Simple_repeat Simple_repeat 1 473 0 579 101 65 6 chr6 127625068 127625237 -61654317 + (TA)n Simple_repeat Simple_repeat 2 180 0 195 274 0 20 chr6 127625416 127625467 -61654087 - L2 LINE L2 -22 3291 3242 1015 225 114 25 chr6 127627257 127627572 -61651982 - MER2 DNA MER2_type 0 344 2 1719 238 204 33 chr6 127627762 127628037 -61651517 + Zaphod DNA AcHobo 10 237 -3794 1077 188 156 28 chr6 127628037 127628357 -61651197 - MLT1A1 LTR MaLR -4 361 1 1719 238 204 33 chr6 127628357 127628724 -61650830 + Zaphod DNA AcHobo 237 762 -3269 348 125 0 0 chr6 127628730 127628778 -61650776 - FRAM SINE Alu -43 123 76 2276 55 0 0 chr6 127629034 127629306 -61650248 - AluY SINE Alu -5 306 35 236 100 25 0 chr6 127629353 127629393 -61650161 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1301 162 41 70 chr6 127629482 127629753 -61649801 - AluJo SINE Alu -32 280 18 391 314 163 0 chr6 127631098 127631251 -61648303 + MER5A DNA MER1_type 10 187 -2 339 222 99 19 chr6 127631282 127631444 -61648110 - MER5C DNA MER1_type -49 275 101 342 275 0 0 chr6 127632452 127632532 -61647022 + L2 LINE L2 3234 3313 0 428 325 16 68 chr6 127632588 127632779 -61646775 - MER5A DNA MER1_type -2 187 7 180 378 14 0 chr6 127632877 127632951 -61646603 + L2 LINE L2 2980 3054 -218 850 355 87 11 chr6 127633021 127633550 -61646004 + MLT1K LTR MaLR 17 585 -3 196 406 41 0 chr6 127633656 127633779 -61645775 + L2 LINE L2 3144 3271 -1 219 277 117 51 chr6 127634298 127634435 -61645119 - L2 LINE L2 -2 3311 3166 1484 172 130 60 chr6 127634729 127634971 -61644583 - MLT1D LTR MaLR -2 503 279 2434 116 25 0 chr6 127634971 127635326 -61644228 - THE1B LTR MaLR 0 364 1 1484 172 130 60 chr6 127635326 127635513 -61644041 - MLT1D LTR MaLR -226 279 44 2169 121 0 10 chr6 127635971 127636285 -61643269 - AluY SINE Alu 0 311 1 567 317 93 14 chr6 127636490 127636780 -61642774 - L2 LINE L2 0 3313 3001 299 330 56 26 chr6 127638736 127639039 -61640515 - L1M4c LINE L1 -4784 1600 1289 1606 128 72 1 chr6 127639177 127639522 -61640032 + L1PA14 LINE L1 5768 6172 -2 359 220 68 25 chr6 127640327 127640445 -61639109 - MLT1K LTR MaLR -47 541 419 243 218 0 0 chr6 127640493 127640548 -61639006 - MLT1K LTR MaLR -158 430 376 2117 139 0 3 chr6 127640805 127641108 -61638446 - AluSx SINE Alu -10 302 1 29 28 0 0 chr6 127641371 127641407 -61638147 + AT_rich Low_complexity Low_complexity 1 36 0 449 277 0 0 chr6 127641688 127641782 -61637772 - MER81 DNA DNA -1 113 20 59 27 0 0 chr6 127642010 127642083 -61637471 + AT_rich Low_complexity Low_complexity 1 73 0 255 208 83 56 chr6 127642532 127642604 -61636950 + MLT1J2 LTR MaLR 69 142 -308 295 256 114 114 chr6 127642659 127642835 -61636719 + MLT1J2 LTR MaLR 240 415 -35 190 81 54 0 chr6 127642932 127642969 -61636585 + (TA)n Simple_repeat Simple_repeat 1 39 0 259 200 0 29 chr6 127643036 127643106 -61636448 + MER31A-int LTR ERV1 4819 4886 -50 2371 165 43 14 chr6 127643110 127643547 -61636007 + MER31A LTR ERV1 1 450 -35 604 307 29 15 chr6 127643961 127644166 -61635388 + MIR SINE MIR 49 256 -6 236 143 24 0 chr6 127644240 127644282 -61635272 + MER63 DNA MER1_type 1 43 -887 935 215 146 0 chr6 127644286 127644560 -61634994 + MER63 DNA MER1_type 729 1042 -18 412 330 59 39 chr6 127644680 127644883 -61634671 + MIR SINE MIR 49 255 -7 200 309 49 81 chr6 127646354 127646477 -61633077 - L2 LINE L2 -8 3305 3187 986 200 40 7 chr6 127647588 127647863 -61631691 + MER33 DNA MER1_type 41 324 0 2280 65 3 3 chr6 127647946 127648238 -61631316 - AluY SINE Alu -19 292 1 752 197 60 49 chr6 127648324 127648507 -61631047 + MER20 DNA MER1_type 32 216 -3 5671 60 38 22 chr6 127648707 127649508 -61630046 - L1PA8 LINE L1 0 6172 5386 189 216 0 0 chr6 127649853 127649890 -61629664 + MIR SINE MIR 223 259 -3 198 0 0 0 chr6 127650192 127650214 -61629340 + (A)n Simple_repeat Simple_repeat 1 22 0 840 321 11 4 chr6 127650216 127650493 -61629061 + L2 LINE L2 2175 2453 -861 1296 85 15 45 chr6 127650613 127650812 -61628742 + MER30 DNA MER1_type 1 193 -37 483 273 107 0 chr6 127650812 127650962 -61628592 + L2 LINE L2 2645 2810 -504 864 183 91 6 chr6 127650971 127651146 -61628408 - MER58A DNA MER1_type -10 214 25 808 245 75 14 chr6 127651148 127651360 -61628194 + L2 LINE L2 3089 3313 0 351 0 0 0 chr6 127651635 127651674 -61627880 + (TA)n Simple_repeat Simple_repeat 1 39 0 180 0 0 0 chr6 127651674 127651694 -61627860 + (TTG)n Simple_repeat Simple_repeat 2 21 0 23 54 0 0 chr6 127652231 127652268 -61627286 + AT_rich Low_complexity Low_complexity 1 37 0 356 154 0 51 chr6 127652571 127652649 -61626905 - L1MA9 LINE L1 -32 6280 6207 2276 86 0 0 chr6 127652654 127652959 -61626595 + AluSc SINE Alu 3 307 0 1213 218 58 14 chr6 127652961 127653255 -61626299 - L1MA9 LINE L1 -95 6217 5911 2295 101 0 0 chr6 127653259 127653556 -61625998 - AluSg SINE Alu -13 297 1 958 303 51 9 chr6 127653608 127653941 -61625613 - MLT1I LTR MaLR 0 409 63 2057 220 40 49 chr6 127654264 127654891 -61624663 - MLT1E3 LTR MaLR 0 624 4 1500 189 127 19 chr6 127654934 127655305 -61624249 - MER39 LTR ERV1 -9 698 288 228 195 0 0 chr6 127655361 127655402 -61624152 - MER34 LTR ERV1 -496 46 6 506 253 49 18 chr6 127655627 127656059 -61623495 - LTR33 LTR ERVL 0 521 3 400 357 78 0 chr6 127656181 127656335 -61623219 + L2 LINE L2 3106 3271 -1 4173 119 17 11 chr6 127658060 127658706 -61620848 + MER39B LTR ERV1 1 650 -3 287 281 0 24 chr6 127659190 127659272 -61620282 - MIR SINE MIR -122 140 61 25 51 0 0 chr6 127659703 127659742 -61619812 + AT_rich Low_complexity Low_complexity 1 39 0 215 61 30 0 chr6 127660956 127660989 -61618565 + (TA)n Simple_repeat Simple_repeat 2 35 0 198 0 0 0 chr6 127661722 127661744 -61617810 + (TG)n Simple_repeat Simple_repeat 2 23 0 293 284 40 14 chr6 127662994 127663068 -61616486 + MIR SINE MIR 32 107 -155 254 308 67 29 chr6 127663733 127663837 -61615717 - L2 LINE L2 -24 3289 3182 376 333 19 25 chr6 127664188 127664350 -61615204 + LTR16C LTR ERVL 36 196 -295 836 227 112 12 chr6 127664561 127664892 -61614662 - L1MEc LINE L1 -5184 1212 849 1333 275 61 7 chr6 127664910 127665353 -61614201 - L1MEc LINE L1 -5640 756 290 187 336 101 40 chr6 127665353 127665502 -61614052 - MER5A DNA MER1_type -16 173 16 221 347 66 9 chr6 127665693 127665886 -61613668 + MIR SINE MIR 18 221 -41 408 320 101 26 chr6 127665979 127666285 -61613269 - HAL1 LINE L1 -1353 1154 826 833 153 17 11 chr6 127666574 127666751 -61612803 + CT-rich Low_complexity Low_complexity 1 178 0 1408 200 3 21 chr6 127667275 127667560 -61611994 + AluJb SINE Alu 3 282 -30 1115 186 0 5 chr6 127667666 127667854 -61611700 + MER20 DNA MER1_type 32 218 -1 224 59 29 0 chr6 127670422 127670456 -61609098 + (TA)n Simple_repeat Simple_repeat 1 35 0 572 230 14 14 chr6 127670476 127670615 -61608939 + LTR41 LTR ERVL 1 139 -634 763 113 0 0 chr6 127670926 127671032 -61608522 - AluJb SINE Alu -5 307 202 468 0 0 0 chr6 127671229 127671281 -61608273 + (TA)n Simple_repeat Simple_repeat 1 52 0 186 43 0 0 chr6 127671342 127671365 -61608189 + (TG)n Simple_repeat Simple_repeat 2 24 0 381 351 0 8 chr6 127672791 127672925 -61606629 - MER94 DNA DNA -1 133 1 285 275 41 111 chr6 127672985 127673066 -61606488 + MIR SINE MIR 48 112 -150 2120 177 11 0 chr6 127673066 127673427 -61606127 - MLT1A1 LTR MaLR 0 365 1 285 275 41 111 chr6 127673427 127673516 -61606038 + MIR SINE MIR 112 206 -56 184 283 43 0 chr6 127674410 127674456 -61605098 - L2 LINE L2 -1432 1882 1835 33 80 0 0 chr6 127674665 127674740 -61604814 + AT_rich Low_complexity Low_complexity 1 75 0 201 74 0 0 chr6 127675589 127675616 -61603938 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr6 127675823 127675851 -61603703 + AT_rich Low_complexity Low_complexity 1 28 0 205 247 73 65 chr6 127676526 127676640 -61602914 + MIR SINE MIR 37 149 -67 23 0 0 0 chr6 127677921 127677944 -61601610 + AT_rich Low_complexity Low_complexity 1 23 0 334 257 38 0 chr6 127679417 127679522 -61600032 - MER103 DNA DNA -57 109 1 1764 77 151 4 chr6 127679838 127680097 -61599457 + AluY SINE Alu 2 298 -3 191 326 102 0 chr6 127681591 127681689 -61597865 - MIR SINE MIR -3 259 152 238 359 23 53 chr6 127681891 127682022 -61597532 - MIR SINE MIR -63 145 19 371 334 29 19 chr6 127683258 127683423 -61596131 + MIR3 SINE MIR 1 167 -64 2078 128 0 10 chr6 127683866 127684178 -61595376 + AluSg SINE Alu 1 309 -1 260 109 0 22 chr6 127684262 127684308 -61595246 + (TATG)n Simple_repeat Simple_repeat 2 46 0 254 217 14 0 chr6 127684298 127684367 -61595187 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 * 64 67 0 0 chr6 127684609 127684729 -61594825 + AT_rich Low_complexity Low_complexity 1 120 0 24 32 0 0 chr6 127685966 127685997 -61593557 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr6 127686306 127686330 -61593224 + AT_rich Low_complexity Low_complexity 1 24 0 2019 147 0 10 chr6 127686544 127686851 -61592703 + AluSx SINE Alu 5 308 -4 698 294 51 85 chr6 127687414 127688106 -61591448 - L2 LINE L2 0 3313 2638 1270 239 65 36 chr6 127688478 127688906 -61590648 + MER39 LTR ERV1 265 585 0 187 208 62 0 chr6 127689664 127689712 -61589842 - L2 LINE L2 -467 2847 2797 304 278 44 0 chr6 127689977 127690067 -61589487 - MER113 DNA MER1_type? -423 98 5 201 39 0 0 chr6 127690419 127690445 -61589109 + (CA)n Simple_repeat Simple_repeat 1 26 0 1172 249 58 11 chr6 127691532 127691927 -61587627 + L1M4 LINE L1 2922 3352 -2794 192 77 0 0 chr6 127691927 127691953 -61587601 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1172 249 58 11 chr6 127691953 127692104 -61587450 + L1M4 LINE L1 3352 3494 -2652 657 294 31 10 chr6 127692127 127692420 -61587134 + L1M4 LINE L1 3239 3537 -2609 1928 189 20 113 chr6 127692427 127692931 -61586623 - MER88 LTR ERVL -7 457 1 312 204 10 25 chr6 127692938 127693034 -61586520 + L1M4 LINE L1 3540 3633 -2513 2031 229 49 21 chr6 127693100 127693668 -61585886 + L1M4 LINE L1 3627 4210 -1936 226 143 0 0 chr6 127693661 127693696 -61585858 - L1MC3 LINE L1 -1036 6749 6715 * 398 52 69 0 chr6 127693702 127693760 -61585794 - MER31B LTR ERV1 -397 69 8 1173 256 50 6 chr6 127693761 127694218 -61585336 + L1M4 LINE L1 4932 5413 -749 1012 198 20 0 chr6 127694220 127694417 -61585137 - MLT1D LTR MaLR 0 505 305 534 258 16 0 chr6 127694417 127694545 -61585009 + L1MC3 LINE L1 6592 6721 -1064 255 273 0 15 chr6 127694553 127694619 -61584935 + MLT1F1 LTR MaLR 47 111 -456 2912 175 55 2 chr6 127694619 127695196 -61584358 + L1MC3 LINE L1 7175 7782 -3 21 57 0 0 chr6 127695447 127695482 -61584072 + AT_rich Low_complexity Low_complexity 1 35 0 261 0 0 0 chr6 127696161 127696190 -61583364 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1853 153 7 3 chr6 127696198 127696498 -61583056 - AluSx SINE Alu -11 301 1 21 71 0 0 chr6 127697564 127697606 -61581948 + AT_rich Low_complexity Low_complexity 1 42 0 445 318 138 21 chr6 127698373 127698794 -61580760 + L2 LINE L2 1890 2359 -955 1815 273 55 6 chr6 127698802 127699271 -61580283 + MLT1G LTR MaLR 11 502 -88 396 304 170 13 chr6 127699308 127699620 -61579934 + L2 LINE L2 2457 2817 -497 602 176 0 61 chr6 127699641 127699772 -61579782 + Charlie5 DNA MER1_type 1 123 -2489 1855 170 21 3 chr6 127699776 127700158 -61579396 + Charlie5 DNA MER1_type 2236 2624 0 348 317 50 118 chr6 127700173 127700570 -61578984 + L2 LINE L2 2871 3240 -32 318 245 10 59 chr6 127700934 127701036 -61578518 + MIR SINE MIR 108 204 -58 497 280 213 24 chr6 127701116 127701323 -61578231 - MIR SINE MIR -15 247 2 269 405 6 0 chr6 127701831 127701999 -61577555 + (CA)n Simple_repeat Simple_repeat 2 170 0 25 0 0 0 chr6 127702109 127702134 -61577420 + AT_rich Low_complexity Low_complexity 1 25 0 189 107 0 0 chr6 127702252 127702280 -61577274 + (CA)n Simple_repeat Simple_repeat 2 29 0 1457 185 38 48 chr6 127702340 127702654 -61576900 + AluJb SINE Alu 1 311 -1 2200 120 0 3 chr6 127704454 127704763 -61574791 + AluSq SINE Alu 1 308 -5 502 193 31 25 chr6 127704763 127704924 -61574630 + GA-rich Low_complexity Low_complexity 1 162 0 596 181 268 0 chr6 127705148 127705286 -61574268 + MER45A DNA AcHobo 1 175 -3 339 25 0 0 chr6 127705380 127705420 -61574134 + (TG)n Simple_repeat Simple_repeat 1 40 0 283 305 67 0 chr6 127705716 127705821 -61573733 + MIR SINE MIR 74 185 -77 308 145 0 16 chr6 127705895 127705957 -61573597 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 21 0 0 0 chr6 127707803 127707824 -61571730 + AT_rich Low_complexity Low_complexity 1 21 0 2511 41 0 3 chr6 127707877 127708172 -61571382 - AluY SINE Alu -17 294 1 24 0 0 0 chr6 127709229 127709253 -61570301 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 127710505 127710526 -61569028 + AT_rich Low_complexity Low_complexity 1 21 0 257 183 17 0 chr6 127710915 127710975 -61568579 + (TA)n Simple_repeat Simple_repeat 1 61 0 538 280 14 28 chr6 127711776 127711919 -61567635 + L2 LINE L2 2524 2664 -650 264 59 0 0 chr6 127711919 127711953 -61567601 + (T)n Simple_repeat Simple_repeat 1 34 0 514 241 87 143 chr6 127711972 127712068 -61567486 + L2 LINE L2 2923 3023 -290 2187 109 0 22 chr6 127712068 127712380 -61567174 - AluSx SINE Alu -7 305 1 514 241 87 143 chr6 127712380 127712470 -61567084 + L2 LINE L2 3023 3116 -197 243 0 0 0 chr6 127712470 127712497 -61567057 + (TTA)n Simple_repeat Simple_repeat 1 27 0 19223 54 5 0 chr6 127712498 127715717 -61563837 - L1PA5 LINE L1 -18 6136 2902 514 241 87 143 chr6 127715717 127715941 -61563613 + L2 LINE L2 3115 3313 0 530 290 89 51 chr6 127716386 127717015 -61562539 + L1ME LINE L1 4787 5447 -679 2037 213 27 21 chr6 127717021 127717538 -61562016 + L1MD3 LINE L1 7476 7995 0 264 290 161 58 chr6 127717543 127717974 -61561580 + L1ME LINE L1 5433 5911 -259 204 40 0 0 chr6 127718285 127718310 -61561244 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 32 57 0 0 chr6 127718462 127718515 -61561039 + AT_rich Low_complexity Low_complexity 1 53 0 1029 182 0 0 chr6 127718694 127718859 -61560695 - AluSg/x SINE Alu -11 301 137 199 333 158 0 chr6 127720513 127720627 -61558927 + L2 LINE L2 3181 3312 -1 22 0 0 0 chr6 127720628 127720650 -61558904 + AT_rich Low_complexity Low_complexity 1 22 0 342 0 0 0 chr6 127720919 127720957 -61558597 + (CA)n Simple_repeat Simple_repeat 2 39 0 2057 70 32 85 chr6 127722895 127723211 -61556343 + AluSq SINE Alu 1 299 -14 22 0 0 0 chr6 127726475 127726497 -61553057 + AT_rich Low_complexity Low_complexity 1 22 0 41012 34 21 1 chr6 127726601 127732629 -61546925 + L1PA2 LINE L1 2 6153 -2 396 361 47 6 chr6 127733618 127733787 -61545767 + L3 LINE CR1 1273 1448 -129 1819 142 29 7 chr6 127733916 127734217 -61545337 + AluJb SINE Alu 2 308 0 302 289 31 39 chr6 127734300 127734428 -61545126 - MIR SINE MIR -9 253 127 595 76 0 0 chr6 127734931 127735056 -61544498 - AluSg/x SINE Alu 0 327 203 249 250 0 0 chr6 127735988 127736048 -61543506 + Charlie8 DNA MER1_type 2357 2416 -1 2945 185 33 17 chr6 127736384 127737023 -61542531 - L1MA10 LINE L1 -13 6321 5673 938 182 30 0 chr6 127737043 127737241 -61542313 + L1M2 LINE L1 5372 5575 -725 23 0 0 0 chr6 127737274 127737297 -61542257 + AT_rich Low_complexity Low_complexity 1 23 0 219 283 0 0 chr6 127737685 127737738 -61541816 + MIR SINE MIR 210 262 0 332 270 43 35 chr6 127737744 127737859 -61541695 - MIR SINE MIR -34 228 113 1835 154 0 27 chr6 127738201 127738516 -61541038 + AluJb SINE Alu 1 307 0 209 340 38 19 chr6 127738847 127738953 -61540601 + L2 LINE L2 2909 3016 -256 638 282 56 20 chr6 127739024 127739276 -61540278 + MIR SINE MIR 2 262 0 421 262 121 7 chr6 127739952 127740093 -61539461 + MER5A DNA MER1_type 33 189 0 1999 133 0 3 chr6 127740594 127740880 -61538674 - AluJb SINE Alu -19 293 9 457 258 84 18 chr6 127743405 127743572 -61535982 - MIR SINE MIR -50 212 35 26 0 0 0 chr6 127744623 127744649 -61534905 + AT_rich Low_complexity Low_complexity 1 26 0 222 269 15 0 chr6 127744912 127744979 -61534575 + GA-rich Low_complexity Low_complexity 1 68 0 182 316 61 44 chr6 127745059 127745173 -61534381 - L2 LINE L2 -878 2436 2321 490 276 47 29 chr6 127745564 127745734 -61533820 - MER5B DNA MER1_type -5 173 1 2115 255 10 19 chr6 127747348 127747862 -61531692 - MLT1F LTR MaLR -6 536 28 17134 185 33 11 chr6 127748212 127754850 -61524704 + L1PA13 LINE L1 2 6796 -18 778 251 0 26 chr6 127754887 127755078 -61524476 + AluJb SINE Alu 127 312 0 556 272 89 18 chr6 127755368 127755706 -61523848 + L1ME3A LINE L1 4039 4400 -1746 973 281 166 10 chr6 127755716 127756300 -61523254 + L1ME3A LINE L1 4573 5247 -899 2064 246 71 24 chr6 127756374 127756928 -61522626 + L1ME3A LINE L1 5274 5883 -287 780 230 99 5 chr6 127756928 127757119 -61522435 - MER63A DNA MER1_type -1 209 1 2064 246 71 24 chr6 127757119 127757413 -61522141 + L1ME3A LINE L1 5883 6162 -8 850 191 12 0 chr6 127757468 127757630 -61521924 - MER58B DNA MER1_type -5 336 173 246 289 45 58 chr6 127757699 127757855 -61521699 - MIR3 SINE MIR -25 183 30 2167 141 30 25 chr6 127759722 127760084 -61519470 + THE1B LTR MaLR 1 364 0 285 297 0 0 chr6 127760881 127760945 -61518609 + L2 LINE L2 3117 3180 -92 557 229 234 10 chr6 127760991 127761183 -61518371 + MER106A DNA MER1_type 2 236 0 22 35 0 0 chr6 127761805 127761834 -61517720 + AT_rich Low_complexity Low_complexity 1 29 0 207 350 114 24 chr6 127762049 127762172 -61517382 - MIR3 SINE MIR -62 146 13 22 0 0 0 chr6 127762382 127762404 -61517150 + AT_rich Low_complexity Low_complexity 1 22 0 3112 129 15 27 chr6 127762439 127762580 -61516974 + L1PA16 LINE L1 5625 5766 -400 216 0 0 0 chr6 127762580 127762604 -61516950 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 3112 129 15 27 chr6 127762604 127763011 -61516543 + L1PA16 LINE L1 5766 6166 0 1004 178 25 0 chr6 127763110 127763307 -61516247 - MER3 DNA MER1_type -5 204 3 3384 117 8 10 chr6 127763522 127764034 -61515520 - MER9 LTR ERVK 0 511 1 8089 91 2 25 chr6 127764034 127765216 -61514338 - HERVK9 LTR ERVK 0 5916 4762 4770 56 2 20 chr6 127765216 127765583 -61513971 - HERVK9 LTR ERVK -1574 4342 3991 2069 107 7 27 chr6 127765583 127765883 -61513671 + AluY SINE Alu 1 294 -17 4770 56 2 20 chr6 127765883 127766159 -61513395 - HERVK9 LTR ERVK -1925 3991 3711 10106 81 0 0 chr6 127766159 127767522 -61512032 - HERVK9 LTR ERVK -3130 2786 1424 3888 99 10 26 chr6 127767520 127768097 -61511457 - HERVK9 LTR ERVK -5348 568 1 * 3353 125 2 6 chr6 127768097 127768594 -61510960 - MER9 LTR ERVK 0 511 17 8480 156 18 8 chr6 127768751 127770204 -61509350 + Tigger1 DNA MER2_type 1 1468 -950 1481 103 52 0 chr6 127770204 127770417 -61509137 - MER30 DNA MER1_type 0 230 7 4002 118 3 0 chr6 127770423 127771001 -61508553 + Tigger1 DNA MER2_type 1461 2040 -378 288 243 0 0 chr6 127771887 127771961 -61507593 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 275 338 110 15 chr6 127772117 127772253 -61507301 - MIR SINE MIR -109 153 5 381 145 0 0 chr6 127772577 127772639 -61506915 + MSTB1 LTR MaLR 344 405 -27 1124 71 7 0 chr6 127773291 127773446 -61506108 + (TTC)n Simple_repeat Simple_repeat 1 156 0 23 0 0 0 chr6 127773557 127773580 -61505974 + AT_rich Low_complexity Low_complexity 1 23 0 2115 199 29 17 chr6 127773592 127774013 -61505541 - MSTB LTR MaLR 0 426 1 30 0 0 0 chr6 127774670 127774700 -61504854 + AT_rich Low_complexity Low_complexity 1 30 0 1349 233 75 55 chr6 127774815 127775271 -61504283 + MLT1C LTR MaLR 1 465 -2 295 154 31 0 chr6 127775785 127775850 -61503704 + GA-rich Low_complexity Low_complexity 3 69 0 460 318 131 5 chr6 127776065 127776355 -61503199 + MLT1J LTR MaLR 1 369 -142 373 350 87 15 chr6 127776475 127776681 -61502873 - MIR SINE MIR -41 221 1 641 313 96 24 chr6 127777539 127777957 -61501597 - MLT1H LTR MaLR 0 549 102 1496 310 57 40 chr6 127778032 127778738 -61500816 + L3 LINE CR1 761 1478 -99 207 182 109 18 chr6 127778759 127778814 -61500740 - MER5B DNA MER1_type 0 178 119 904 230 76 9 chr6 127778929 127779192 -61500362 + MER58B DNA MER1_type 37 341 0 187 255 255 21 chr6 127779217 127779311 -61500243 + MER5A DNA MER1_type 73 188 -1 28 0 0 0 chr6 127779332 127779360 -61500194 + AT_rich Low_complexity Low_complexity 1 28 0 2307 161 149 138 chr6 127779602 127779962 -61499592 + L1MC3 LINE L1 6711 7066 -719 273 263 53 21 chr6 127779962 127780057 -61499497 + MLT1F1 LTR MaLR 35 132 -435 2307 161 149 138 chr6 127780057 127780372 -61499182 + L1MC3 LINE L1 7066 7492 -293 1935 146 23 41 chr6 127780372 127780715 -61498839 - MER1B DNA MER1_type 0 337 1 2307 161 149 138 chr6 127780715 127780768 -61498786 + L1MC3 LINE L1 7492 7543 -242 2815 287 43 18 chr6 127781859 127783264 -61496290 - L1MEc LINE L1 -1483 4732 3282 5551 83 12 0 chr6 127783265 127784010 -61495544 + L1PA8A LINE L1 5358 6111 -20 3711 266 69 45 chr6 127784037 127786898 -61492656 - L1MEc LINE L1 -2922 3293 376 2037 114 125 36 chr6 127786898 127787291 -61492263 - MSTA LTR MaLR 0 428 1 3711 266 69 45 chr6 127787291 127787595 -61491959 - L1MEc LINE L1 -5839 376 81 1641 239 22 2 chr6 127787672 127788077 -61491477 + L1MB8 LINE L1 5760 6172 -6 1851 153 73 14 chr6 127789870 127790224 -61489330 + THE1C LTR MaLR 1 375 0 477 129 26 0 chr6 127791479 127791595 -61487959 + (TA)n Simple_repeat Simple_repeat 2 120 0 183 129 0 0 chr6 127792464 127792495 -61487059 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr6 127793474 127793505 -61486049 + AT_rich Low_complexity Low_complexity 1 31 0 185 385 24 0 chr6 127794059 127794142 -61485412 - L2 LINE L2 0 3272 3188 9994 174 8 6 chr6 127794197 127796938 -61482616 + L1PA13 LINE L1 3426 6163 0 466 290 102 11 chr6 127797124 127797310 -61482244 + L2 LINE L2 3111 3313 0 409 288 43 38 chr6 127797892 127798076 -61481478 + MIR SINE MIR 49 233 -29 2144 127 3 3 chr6 127798407 127798715 -61480839 - AluSx SINE Alu -4 308 1 646 270 128 18 chr6 127798812 127799038 -61480516 + MIR SINE MIR 11 261 -1 288 53 0 0 chr6 127799180 127799218 -61480336 + (CA)n Simple_repeat Simple_repeat 1 38 0 281 289 167 0 chr6 127800044 127800200 -61479354 - L1ME3A LINE L1 -222 5948 5767 889 255 77 17 chr6 127800204 127800447 -61479107 + MER77 LTR ERV1 1 359 -246 1383 177 0 8 chr6 127800447 127800684 -61478870 - MER46A DNA MER2_type -1 235 1 889 255 77 17 chr6 127800684 127800774 -61478780 + MER77 LTR ERV1 359 442 -163 2347 145 5 0 chr6 127802027 127802399 -61477155 + L1PA15 LINE L1 5779 6152 -13 216 0 0 0 chr6 127802420 127802444 -61477110 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3969 180 73 46 chr6 127802601 127803540 -61476014 + L1MC2 LINE L1 5379 6343 -1 209 33 33 0 chr6 127803638 127803668 -61475886 + (CA)n Simple_repeat Simple_repeat 2 32 0 198 191 16 111 chr6 127803703 127803766 -61475788 + L2 LINE L2 3202 3258 -55 24 67 0 0 chr6 127803779 127803824 -61475730 + AT_rich Low_complexity Low_complexity 1 45 0 749 266 25 93 chr6 127804861 127805139 -61474415 - MIR SINE MIR 0 262 4 2066 219 16 26 chr6 127805161 127805613 -61473941 - MER74B LTR ERVL 0 622 176 569 186 9 9 chr6 127805664 127805777 -61473777 - MER74A LTR ERVL -445 113 1 256 311 86 27 chr6 127805790 127806012 -61473542 + L1MC/D LINE L1 5614 5848 -1960 862 173 21 37 chr6 127806369 127806560 -61472994 - MER5A DNA MER1_type 0 189 2 234 0 0 0 chr6 127807670 127807696 -61471858 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 746 12 0 0 chr6 127807696 127807781 -61471773 - L1PA4 LINE L1 -16 6139 6055 207 69 0 0 chr6 127808403 127808432 -61471122 + (TG)n Simple_repeat Simple_repeat 2 30 0 217 184 0 61 chr6 127809179 127809228 -61470326 - L2 LINE L2 -5 3308 3263 392 320 93 34 chr6 127809234 127809503 -61470051 + MLT1J LTR MaLR 1 285 -226 197 211 18 0 chr6 127809526 127809583 -61469971 + GA-rich Low_complexity Low_complexity 2 59 0 1516 237 91 24 chr6 127809620 127810077 -61469477 - MLT2B1 LTR ERVL -20 534 1 308 302 63 32 chr6 127810083 127810209 -61469345 + MLT1J LTR MaLR 382 511 0 207 365 81 0 chr6 127810439 127810513 -61469041 + L2 LINE L2 2970 3049 -223 323 368 36 12 chr6 127810954 127811120 -61468434 - L1ME3A LINE L1 -273 5897 5728 204 204 37 0 chr6 127811196 127811250 -61468304 + (TA)n Simple_repeat Simple_repeat 2 57 0 599 320 64 27 chr6 127811251 127811668 -61467886 - L1ME3A LINE L1 -520 5642 5268 313 321 46 37 chr6 127811702 127812051 -61467503 - L1ME3A LINE L1 -912 5234 4883 2143 99 3 0 chr6 127812392 127812846 -61466708 - AluSc SINE Alu 0 455 1 2155 117 0 3 chr6 127863638 127863946 -61415608 + AluSc SINE Alu 1 307 -2 235 255 0 0 chr6 127864275 127864326 -61415228 - MIR3 SINE MIR -2 206 156 23 0 0 0 chr6 127864843 127864866 -61414688 + AT_rich Low_complexity Low_complexity 1 23 0 357 320 16 90 chr6 127866022 127866266 -61413288 - L2 LINE L2 -3 3269 3044 688 70 74 7 chr6 127868137 127868439 -61411115 + (TA)n Simple_repeat Simple_repeat 1 322 0 579 72 85 7 chr6 127868457 127868858 -61410696 + (TA)n Simple_repeat Simple_repeat 1 432 0 195 274 0 20 chr6 127869079 127869130 -61410424 - L2 LINE L2 -22 3291 3242 985 232 114 25 chr6 127870920 127871235 -61408319 - MER2 DNA MER2_type 0 344 2 1706 238 206 33 chr6 127871425 127871700 -61407854 + Zaphod DNA AcHobo 10 236 -3795 1077 188 156 28 chr6 127871700 127872020 -61407534 - MLT1A1 LTR MaLR -4 361 1 1706 238 206 33 chr6 127872020 127872386 -61407168 + Zaphod DNA AcHobo 236 762 -3269 1248 154 23 85 chr6 127872392 127872545 -61407009 - AluJo SINE Alu -53 259 127 1021 39 0 0 chr6 127872545 127872674 -61406880 - L1PA4 LINE L1 -1 6154 6026 1248 154 23 85 chr6 127872674 127872779 -61406775 - AluJo SINE Alu -185 127 17 778 242 69 9 chr6 127872968 127873346 -61406208 + Zaphod DNA AcHobo 3595 4031 0 297 0 0 0 chr6 127874212 127874245 -61405309 + (CA)n Simple_repeat Simple_repeat 2 34 0 2312 51 0 0 chr6 127874705 127874979 -61404575 - AluY SINE Alu -3 308 35 236 100 25 0 chr6 127875026 127875066 -61404488 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1374 155 37 66 chr6 127875155 127875426 -61404128 - AluJo SINE Alu -32 280 18 379 314 163 0 chr6 127876772 127876925 -61402629 + MER5A DNA MER1_type 10 187 -2 325 228 99 19 chr6 127876956 127877118 -61402436 - MER5C DNA MER1_type -49 275 101 187 325 77 17 chr6 127879685 127879802 -61399752 + L2 LINE L2 3141 3264 -8 1979 133 7 7 chr6 127880368 127880661 -61398893 + AluJb SINE Alu 7 299 -13 22 56 0 0 chr6 127881960 127881996 -61397558 + AT_rich Low_complexity Low_complexity 1 36 0 710 257 86 40 chr6 127883298 127883520 -61396034 - MIR SINE MIR -2 260 29 297 335 122 26 chr6 127883538 127883768 -61395786 + ERVL LTR ERVL 4564 4815 -949 672 239 18 0 chr6 127883846 127884009 -61395545 - MER3 DNA MER1_type -1 208 43 422 284 43 52 chr6 127884094 127884305 -61395249 + LTR67 LTR ERVL 347 555 -2 345 372 84 5 chr6 127885063 127885254 -61394300 + L3 LINE CR1 1369 1574 -3 269 118 20 0 chr6 127886090 127886141 -61393413 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 200 176 0 0 chr6 127886326 127886360 -61393194 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 323 352 9 0 chr6 127886401 127886506 -61393048 - L3 LINE CR1 -456 1121 1016 186 103 0 0 chr6 127887887 127887916 -61391638 + (A)n Simple_repeat Simple_repeat 1 29 0 2442 56 20 0 chr6 127888028 127888332 -61391222 + AluY SINE Alu 1 310 -1 5756 29 30 0 chr6 127888895 127889593 -61389961 + L1PA4 LINE L1 5436 6154 -1 443 356 106 16 chr6 127889660 127890112 -61389442 - L3 LINE CR1 -630 947 455 435 356 57 0 chr6 127890279 127890473 -61389081 - L3 LINE CR1 -1114 463 259 21 0 0 0 chr6 127890662 127890683 -61388871 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 127891501 127891522 -61388032 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr6 127891529 127891575 -61387979 + (CA)n Simple_repeat Simple_repeat 2 47 0 180 0 0 0 chr6 127892859 127892879 -61386675 + (CAA)n Simple_repeat Simple_repeat 2 21 0 944 191 21 5 chr6 127893165 127893353 -61386201 - MER20 DNA MER1_type -1 218 28 558 281 66 12 chr6 127893626 127893793 -61385761 + MIR SINE MIR 25 200 -62 577 299 48 11 chr6 127895161 127895348 -61384206 + MER58A DNA MER1_type 31 224 0 200 213 0 0 chr6 127895462 127895509 -61384045 + (TA)n Simple_repeat Simple_repeat 1 47 0 180 0 0 0 chr6 127896112 127896132 -61383422 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 181 316 0 0 chr6 127896955 127897012 -61382542 + MIR SINE MIR 90 146 -116 195 309 73 0 chr6 127897038 127897106 -61382448 + MIR SINE MIR 142 214 -48 411 262 10 0 chr6 127897311 127897414 -61382140 - MER103 DNA DNA -52 114 11 1283 186 95 44 chr6 127897488 127897833 -61381721 + AluJo SINE Alu 1 360 0 22 56 0 0 chr6 127898085 127898121 -61381433 + AT_rich Low_complexity Low_complexity 1 36 0 196 303 49 33 chr6 127898610 127898732 -61380822 + L2 LINE L2 3180 3303 -10 214 146 18 36 chr6 127899102 127899157 -61380397 + GA-rich Low_complexity Low_complexity 3 56 0 22 80 0 0 chr6 127899355 127899405 -61380149 + AT_rich Low_complexity Low_complexity 1 50 0 2169 114 13 0 chr6 127900198 127900504 -61379050 - AluSq SINE Alu -3 310 1 2071 132 30 0 chr6 127902285 127902588 -61376966 + AluSx SINE Alu 1 312 0 205 359 134 0 chr6 127902618 127902760 -61376794 - L2 LINE L2 -411 2903 2743 195 333 8 92 chr6 127902974 127903223 -61376331 - L2 LINE L2 -869 2445 2218 2171 131 0 0 chr6 127903416 127903728 -61375826 - AluSx SINE Alu 0 312 1 205 184 0 0 chr6 127903884 127903922 -61375632 + A-rich Low_complexity Low_complexity 2 39 0 223 170 0 0 chr6 127904240 127904287 -61375267 + A-rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr6 127904465 127904494 -61375060 + AT_rich Low_complexity Low_complexity 1 29 0 386 314 64 7 chr6 127904579 127904719 -61374835 - MIR SINE MIR -93 169 22 207 0 0 0 chr6 127904784 127904807 -61374747 + (A)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr6 127905235 127905256 -61374298 + (T)n Simple_repeat Simple_repeat 1 21 0 192 245 38 0 chr6 127905256 127905309 -61374245 + L2 LINE L2 2685 2739 -575 319 347 114 22 chr6 127905456 127905727 -61373827 - L2 LINE L2 -4 3309 3014 1947 133 7 0 chr6 127905735 127906049 -61373505 + AluSx SINE Alu 1 316 0 342 331 137 24 chr6 127906054 127906302 -61373252 - L2 LINE L2 -342 2972 2697 23 0 0 0 chr6 127906756 127906779 -61372775 + AT_rich Low_complexity Low_complexity 1 23 0 464 259 269 5 chr6 127906952 127907153 -61372401 - MIR SINE MIR -1 261 8 207 186 0 0 chr6 127907755 127907798 -61371756 + (TA)n Simple_repeat Simple_repeat 1 43 0 538 304 82 0 chr6 127909739 127909923 -61369631 + MIR SINE MIR 32 230 -32 1822 164 0 17 chr6 127909944 127910236 -61369318 + AluSx SINE Alu 22 308 -4 268 151 0 41 chr6 127910238 127910311 -61369243 + GA-rich Low_complexity Low_complexity 3 72 0 549 88 0 12 chr6 127910378 127910458 -61369096 + MADE1 DNA Mariner 2 80 0 231 61 0 0 chr6 127910507 127910540 -61369014 + (CAT)n Simple_repeat Simple_repeat 3 35 0 328 130 29 0 chr6 127911070 127911139 -61368415 + CT-rich Low_complexity Low_complexity 1 71 0 207 351 23 30 chr6 127912201 127912332 -61367222 + L2 LINE L2 2553 2682 -632 320 296 20 0 chr6 127912368 127912466 -61367088 - MIR SINE MIR -162 100 1 754 230 51 123 chr6 127912605 127913036 -61366518 - MLT1L LTR MaLR -8 607 208 257 272 7 66 chr6 127913218 127913354 -61366200 + MER112 DNA MER1_type 125 252 -8 192 40 0 0 chr6 127913355 127913380 -61366174 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4348 57 7 5 chr6 127913387 127913952 -61365602 + L1PA8 LINE L1 5607 6172 0 276 342 60 8 chr6 127914724 127914841 -61364713 - L2 LINE L2 -24 3248 3126 326 336 76 0 chr6 127914887 127915018 -61364536 - MIR SINE MIR -5 257 117 252 0 0 0 chr6 127915099 127915127 -61364427 + (TG)n Simple_repeat Simple_repeat 2 29 0 195 204 0 0 chr6 127915625 127915674 -61363880 + GA-rich Low_complexity Low_complexity 2 50 0 2362 103 0 0 chr6 127916418 127916730 -61362824 + AluSx SINE Alu 1 312 0 313 28 0 0 chr6 127917144 127917180 -61362374 + U2 snRNA snRNA 1 36 -152 189 94 0 0 chr6 127917449 127917481 -61362073 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1439 207 34 34 chr6 127918750 127919045 -61360509 - AluJo SINE Alu -17 295 1 200 286 33 55 chr6 127919049 127919140 -61360414 + MIR SINE MIR 124 212 -50 363 279 63 89 chr6 127919760 127919997 -61359557 - MLT1K LTR MaLR -2 586 356 1013 155 64 64 chr6 127920410 127920707 -61358847 + MER33 DNA MER1_type 28 324 0 205 324 29 0 chr6 127923634 127923702 -61355852 + L3b LINE CR1 1416 1485 -98 508 320 34 0 chr6 127924022 127924197 -61355357 - MIR SINE MIR -25 237 57 263 169 15 15 chr6 127924203 127924268 -61355286 - MLT1D LTR MaLR -3 502 438 1375 164 9 0 chr6 127924268 127924482 -61355072 + AluJo SINE Alu 61 276 -36 180 77 0 0 chr6 127924490 127924516 -61355038 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1306 236 93 29 chr6 127924516 127924935 -61354619 - MLT1D LTR MaLR -59 446 1 198 289 144 11 chr6 127925105 127925195 -61354359 + MIR SINE MIR 23 124 -84 823 143 8 8 chr6 127925334 127925467 -61354087 - FLAM_C SINE Alu 0 133 1 1234 263 75 17 chr6 127925503 127925861 -61353693 - MLT1F LTR MaLR -163 379 1 890 261 109 13 chr6 127925929 127926305 -61353249 - MER39 LTR ERV1 0 707 296 240 300 11 11 chr6 127926326 127926416 -61353138 - LTR48B LTR ERV1 -554 90 1 192 382 10 10 chr6 127927007 127927109 -61352445 - L2 LINE L2 -17 3255 3154 303 259 28 28 chr6 127927566 127927674 -61351880 + L2 LINE L2 3191 3298 -15 268 324 66 15 chr6 127927760 127927896 -61351658 + MIR SINE MIR 82 224 -38 380 356 88 77 chr6 127928065 127928635 -61350919 - L2 LINE L2 -10 3262 2690 244 302 237 23 chr6 127928837 127929052 -61350502 - L2 LINE L2 -688 2626 2366 1504 203 68 47 chr6 127929664 127930136 -61349418 - MLT1D LTR MaLR 0 505 24 545 246 37 18 chr6 127930915 127931183 -61348371 + L1ME1 LINE L1 3663 3931 -2215 1773 195 8 14 chr6 127931219 127931342 -61348212 + MLT1A1 LTR MaLR 11 133 -232 1352 166 114 13 chr6 127931342 127931649 -61347905 + MER44D DNA MER2_type 2 609 0 1773 195 8 14 chr6 127931649 127931879 -61347675 + MLT1A1 LTR MaLR 133 362 -3 895 203 37 59 chr6 127931880 127932235 -61347319 + L1ME1 LINE L1 4963 5309 -837 1933 151 10 0 chr6 127932239 127932531 -61347023 + AluSx SINE Alu 6 300 -12 2885 145 153 34 chr6 127932532 127932725 -61346829 - L1P LINE L1 -923 5223 5054 342 0 0 0 chr6 127932725 127932763 -61346791 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1961 142 3 0 chr6 127932767 127933055 -61346499 - AluSx SINE Alu -23 289 1 2885 145 153 34 chr6 127933055 127933498 -61346056 - L1P LINE L1 -1094 5052 4506 5622 96 18 46 chr6 127933508 127934026 -61345528 + L1PA10 LINE L1 5254 5736 -432 2387 125 0 0 chr6 127934026 127934338 -61345216 + AluSx SINE Alu 1 312 0 5622 96 18 46 chr6 127934338 127934756 -61344798 + L1PA10 LINE L1 5736 6164 -4 21 0 0 0 chr6 127934756 127934777 -61344777 + AT_rich Low_complexity Low_complexity 1 21 0 1455 263 72 15 chr6 127934779 127935322 -61344232 + L1ME1 LINE L1 5588 6161 -5 731 174 145 0 chr6 127937712 127937982 -61341572 - MER33 DNA MER1_type 0 363 1 240 35 0 0 chr6 127938841 127938870 -61340684 + (TA)n Simple_repeat Simple_repeat 2 30 0 928 156 0 11 chr6 127939210 127939390 -61340164 + MER96B DNA MER1_type? 1 178 -239 6970 140 15 11 chr6 127939629 127939996 -61339558 - Tigger3b DNA MER2_type -1797 1231 867 3266 131 2 14 chr6 127939996 127940499 -61339055 + LOR1a LTR ERV1 1 497 0 6970 140 15 11 chr6 127940499 127941357 -61338197 - Tigger3b DNA MER2_type -2161 867 2 324 337 20 0 chr6 127942589 127942687 -61336867 + L2 LINE L2 3168 3267 -5 228 146 18 36 chr6 127943535 127943590 -61335964 - MLT1E1 LTR MaLR -5 619 566 978 239 27 43 chr6 127943617 127943918 -61335636 - MLT1E1 LTR MaLR -54 600 305 218 148 19 0 chr6 127943918 127943972 -61335582 + CT-rich Low_complexity Low_complexity 1 55 0 2146 136 11 37 chr6 127943978 127944352 -61335202 + THE1B LTR MaLR 1 364 0 246 246 49 0 chr6 127944355 127944416 -61335138 - MLT1E LTR MaLR -406 187 124 452 218 120 28 chr6 127944430 127944572 -61334982 - MLT1E LTR MaLR -438 155 1 639 274 48 14 chr6 127946994 127947202 -61332352 - MER58C DNA MER1_type 0 215 1 24 0 0 0 chr6 127947238 127947262 -61332292 + AT_rich Low_complexity Low_complexity 1 24 0 2121 141 0 0 chr6 127947362 127947661 -61331893 + AluSx SINE Alu 1 299 -13 1937 180 69 0 chr6 127948838 127949215 -61330339 + MER57A LTR ERV1 1 403 0 605 242 68 6 chr6 127949227 127949388 -61330166 - MIR SINE MIR -84 178 8 22 0 0 0 chr6 127950441 127950463 -61329091 + AT_rich Low_complexity Low_complexity 1 22 0 2102 142 15 45 chr6 127950946 127951229 -61328325 + MLT1B LTR MaLR 1 270 -120 1912 125 14 20 chr6 127951229 127951525 -61328029 + AluSg SINE Alu 1 294 -16 2102 142 15 45 chr6 127951525 127951643 -61327911 + MLT1B LTR MaLR 270 390 0 21 0 0 0 chr6 127951958 127951979 -61327575 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 127952366 127952397 -61327157 + AT_rich Low_complexity Low_complexity 1 31 0 1125 215 68 49 chr6 127952639 127953006 -61326548 - MLT1A2 LTR MaLR 0 374 1 183 309 144 10 chr6 127953265 127953362 -61326192 + MIR SINE MIR 146 255 -7 346 340 115 13 chr6 127953950 127954185 -61325369 - MIR SINE MIR 0 262 4 190 355 112 12 chr6 127954410 127954669 -61324885 - L2 LINE L2 -719 2595 2311 423 234 221 61 chr6 127955357 127955588 -61323966 - MLT1J LTR MaLR -173 338 71 6846 48 2 0 chr6 127957132 127957962 -61321592 + L1PA5 LINE L1 5310 6141 -13 26 64 0 0 chr6 127957962 127958009 -61321545 + AT_rich Low_complexity Low_complexity 1 47 0 1844 136 48 0 chr6 127958015 127958288 -61321266 + AluSx SINE Alu 1 286 -26 301 277 139 0 chr6 127959006 127959107 -61320447 + L2 LINE L2 3158 3272 0 1288 245 165 46 chr6 127959141 127959663 -61319891 + L2 LINE L2 1859 2442 -872 249 278 56 11 chr6 127959718 127959808 -61319746 - LTR33A LTR ERVL -361 162 69 462 255 97 125 chr6 127959887 127959997 -61319557 + L2 LINE L2 2611 2723 -590 5290 44 2 0 chr6 127959997 127960630 -61318924 - L1PA6 LINE L1 -15 6139 5506 462 255 97 125 chr6 127960630 127961033 -61318521 + L2 LINE L2 2723 3118 -195 2143 102 3 0 chr6 127961380 127961664 -61317890 + AluY SINE Alu 1 285 -26 4125 164 37 17 chr6 127961730 127962059 -61317495 - L1MA8 LINE L1 -172 7079 6758 210 91 0 0 chr6 127962059 127962092 -61317462 + (TG)n Simple_repeat Simple_repeat 2 34 0 4125 164 37 17 chr6 127962092 127963122 -61316432 - L1MA8 LINE L1 -493 6758 5689 2625 219 60 24 chr6 127963129 127964363 -61315191 - L1MA8 LINE L1 -4521 2516 1226 242 28 0 28 chr6 127964363 127964399 -61315155 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 1925 147 37 0 chr6 127964459 127964758 -61314796 - AluSx SINE Alu -2 310 1 209 279 58 48 chr6 127964768 127964872 -61314682 + L2 LINE L2 3169 3273 -40 704 292 46 38 chr6 127965093 127965466 -61314088 - MLT1K LTR MaLR -14 574 199 442 261 28 51 chr6 127965738 127965914 -61313640 + MIR3 SINE MIR 20 191 -17 327 309 154 0 chr6 127966124 127966234 -61313320 - MER5A DNA MER1_type -3 186 60 23 0 0 0 chr6 128017578 128017601 -61261953 + AT_rich Low_complexity Low_complexity 1 23 0 223 265 200 53 chr6 128017875 128018045 -61261509 - MIR SINE MIR -66 196 2 1259 151 44 24 chr6 128018628 128018879 -61260675 + L1MC1 LINE L1 6066 6321 -12 7051 126 17 27 chr6 128019082 128020270 -61259284 - Tigger3b DNA MER2_type -55 1176 1 786 215 37 12 chr6 128020393 128020556 -61258998 + MER5A DNA MER1_type 23 189 0 306 294 53 77 chr6 128020407 128020577 -61258977 - MER5A DNA MER1_type -23 166 1 * 396 252 110 8 chr6 128020678 128020805 -61258749 + MIR SINE MIR 122 261 -1 653 275 90 20 chr6 128021656 128021900 -61257654 - MIR SINE MIR 0 262 2 23 33 0 0 chr6 128021989 128022019 -61257535 + AT_rich Low_complexity Low_complexity 1 30 0 860 250 0 0 chr6 128022466 128022642 -61256912 + MER45A DNA AcHobo 3 178 0 303 209 76 38 chr6 128022814 128022919 -61256635 + MER5C DNA MER1_type 9 117 -207 369 230 53 18 chr6 128022949 128023062 -61256492 + MER5C DNA MER1_type 208 324 0 188 234 0 16 chr6 128024290 128024354 -61255200 + GA-rich Low_complexity Low_complexity 4 66 0 2017 132 132 8 chr6 128024859 128025237 -61254317 + MSTA LTR MaLR 1 425 -3 318 50 0 0 chr6 128025237 128025277 -61254277 + (CA)n Simple_repeat Simple_repeat 2 41 0 780 176 8 8 chr6 128025424 128025555 -61253999 + FLAM_C SINE Alu 1 131 -2 1780 174 0 7 chr6 128026445 128026743 -61252811 + AluJo SINE Alu 1 296 -16 860 237 84 75 chr6 128027764 128028312 -61251242 - MLT1H1 LTR MaLR -2 553 1 458 81 0 0 chr6 128028459 128028553 -61251001 - AluSg/x SINE Alu 0 311 218 2373 43 0 4 chr6 128028577 128028878 -61250676 - AluY SINE Alu 0 300 1 21 0 0 0 chr6 128029605 128029626 -61249928 + AT_rich Low_complexity Low_complexity 1 21 0 1949 227 45 4 chr6 128029859 128030343 -61249211 - L1MC4a LINE L1 -342 7466 6963 247 211 19 0 chr6 128030347 128030399 -61249155 + MER5B DNA MER1_type 126 178 0 527 172 10 20 chr6 128030914 128031013 -61248541 + MER5A DNA MER1_type 9 106 -83 796 223 21 43 chr6 128031181 128031369 -61248185 + MER5A DNA MER1_type 1 184 -5 271 140 9 246 chr6 128031381 128031495 -61248059 - MER5B DNA MER1_type 0 178 92 7250 227 81 40 chr6 128031512 128032424 -61247130 + L1ME1 LINE L1 2682 3554 -2612 4606 110 30 1 chr6 128032424 128033096 -61246458 + LTR8 LTR ERV1 1 691 0 7250 227 81 40 chr6 128033096 128035470 -61244084 + L1ME1 LINE L1 3554 6103 -63 413 154 308 0 chr6 128035405 128035509 -61244045 + L1MA10 LINE L1 6198 6333 -1 * 442 200 0 148 chr6 128035556 128035641 -61243913 - MER5B DNA MER1_type -45 133 37 234 0 0 0 chr6 128035641 128035667 -61243887 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2053 64 0 4 chr6 128035671 128035921 -61243633 - AluY SINE Alu -62 249 1 442 200 0 148 chr6 128035921 128035985 -61243569 - MER5B DNA MER1_type -144 34 2 851 209 0 0 chr6 128036296 128036444 -61243110 + FRAM SINE Alu 1 148 -18 1657 175 16 48 chr6 128037289 128037603 -61241951 + AluJb SINE Alu 1 304 -8 2313 89 0 7 chr6 128037855 128038157 -61241397 - AluSx SINE Alu -12 300 1 4234 98 13 2 chr6 128038177 128038792 -61240762 - L1PA10 LINE L1 -1 6167 5546 314 244 39 0 chr6 128039118 128039196 -61240358 + MER94 DNA DNA 1 81 -53 534 262 55 22 chr6 128040791 128040974 -61238580 - MER91B DNA MER1_type 0 190 2 242 333 17 43 chr6 128041990 128042107 -61237447 + MIR SINE MIR 40 153 -55 247 306 0 0 chr6 128043083 128043145 -61236409 + MIR3 SINE MIR 119 180 -28 266 260 67 19 chr6 128043177 128043281 -61236273 + MIR SINE MIR 15 123 -139 1435 206 179 20 chr6 128043704 128044151 -61235403 + MLT1E LTR MaLR 74 591 -2 1819 139 0 4 chr6 128044714 128044973 -61234581 + AluSx SINE Alu 33 290 -22 42818 35 21 1 chr6 128045532 128051562 -61227992 + L1PA2 LINE L1 2 6153 -2 270 95 0 0 chr6 128051863 128051905 -61227649 + (TG)n Simple_repeat Simple_repeat 2 43 0 396 0 0 0 chr6 128052075 128052119 -61227435 + (TG)n Simple_repeat Simple_repeat 2 45 0 240 163 0 0 chr6 128052120 128052163 -61227391 + (TA)n Simple_repeat Simple_repeat 2 44 0 2025 143 0 0 chr6 128052566 128052866 -61226688 + AluSx SINE Alu 1 300 -12 577 250 61 177 chr6 128054403 128054597 -61224957 - HAL1 LINE L1 -7 2500 2285 1747 170 56 0 chr6 128054597 128054921 -61224633 - MER2 DNA MER2_type -1 343 2 577 250 61 177 chr6 128054921 128055070 -61224484 - HAL1 LINE L1 -222 2285 2120 2065 152 33 0 chr6 128055070 128055406 -61224148 - MER7A DNA MER2_type 0 346 2 577 250 61 177 chr6 128055406 128055525 -61224029 - HAL1 LINE L1 -387 2120 1989 1883 166 0 0 chr6 128055525 128055815 -61223739 + AluSx SINE Alu 2 291 -21 577 250 61 177 chr6 128055815 128056303 -61223251 - HAL1 LINE L1 -518 1989 1659 530 256 67 10 chr6 128056437 128056674 -61222880 + MLT1J1 LTR MaLR 124 394 -41 512 278 139 58 chr6 128056680 128057305 -61222249 - HAL1 LINE L1 -885 1622 947 311 276 37 43 chr6 128057887 128058050 -61221504 - L1ME4a LINE L1 -3 6536 6375 496 308 56 20 chr6 128058128 128058433 -61221121 - L1ME4a LINE L1 -293 6246 5931 854 308 35 25 chr6 128058719 128059086 -61220468 - Tigger8 DNA MER2_type -235 431 61 270 306 44 11 chr6 128059117 128059300 -61220254 - L1ME4a LINE L1 -727 5861 5673 2065 135 140 8 chr6 128059422 128059800 -61219754 + MSTA LTR MaLR 1 428 0 14285 194 41 26 chr6 128059856 128060684 -61218870 + L1MA6 LINE L1 2752 3565 -4048 2180 127 3 0 chr6 128060684 128060992 -61218562 + AluSq SINE Alu 1 309 -4 14285 194 41 26 chr6 128060992 128064200 -61215354 + L1MA6 LINE L1 3565 6870 -743 7219 28 10 0 chr6 128064202 128065515 -61214039 + L1PA3 LINE L1 4844 6171 0 4986 139 19 6 chr6 128065515 128066379 -61213175 + L1MA6 LINE L1 6843 7717 -2 421 295 47 106 chr6 128066499 128066610 -61212944 - L1ME4a LINE L1 -1172 5392 5276 1815 160 3 39 chr6 128066610 128066916 -61212638 + AluJb SINE Alu 3 297 -15 421 295 47 106 chr6 128066916 128067238 -61212316 - L1ME4a LINE L1 -1288 5276 4989 1674 197 0 10 chr6 128067238 128067537 -61212017 + AluJo SINE Alu 1 296 -16 421 295 47 106 chr6 128067537 128067593 -61211961 - L1ME4a LINE L1 -1575 4989 4931 2176 128 7 0 chr6 128067872 128068177 -61211377 - AluSx SINE Alu -5 307 1 336 158 0 53 chr6 128068910 128068986 -61210568 - AluSp/q SINE Alu -1 302 231 2010 118 0 0 chr6 128068986 128069256 -61210298 - AluSq SINE Alu -43 270 1 482 314 161 37 chr6 128069359 128069764 -61209790 - L1ME4a LINE L1 -2469 4095 3641 29 0 0 0 chr6 128069912 128069941 -61209613 + AT_rich Low_complexity Low_complexity 1 29 0 227 279 104 43 chr6 128069941 128070385 -61209169 - L1ME4a LINE L1 -4964 1081 902 313 273 55 66 chr6 128070797 128070980 -61208574 - L1ME4a LINE L1 -5888 666 486 207 263 0 0 chr6 128071024 128071081 -61208473 + T-rich Low_complexity Low_complexity 3 59 0 481 316 81 68 chr6 128071350 128071822 -61207732 + MLT1K LTR MaLR 111 588 0 304 279 101 0 chr6 128071970 128072049 -61207505 + L2 LINE L2 3216 3302 -11 27 0 0 0 chr6 128072064 128072091 -61207463 + AT_rich Low_complexity Low_complexity 1 27 0 203 269 141 13 chr6 128072432 128072510 -61207044 + MIR3 SINE MIR 121 208 0 189 345 17 34 chr6 128074327 128074446 -61205108 + L3b LINE CR1 1362 1478 -105 2200 196 30 20 chr6 128074907 128075367 -61204187 - MLT1C LTR MaLR -2 465 1 482 285 13 33 chr6 128075817 128075968 -61203586 - MIR3 SINE MIR -1 207 60 2300 112 0 0 chr6 128076378 128076674 -61202880 + AluSg SINE Alu 1 296 -14 202 297 109 59 chr6 128077852 128077953 -61201601 - L2 LINE L2 -12 3260 3155 1582 164 41 20 chr6 128078251 128078544 -61201010 - AluJo SINE Alu -13 299 1 252 100 0 0 chr6 128078549 128078589 -61200965 + (TA)n Simple_repeat Simple_repeat 2 41 0 339 274 0 20 chr6 128078589 128078691 -61200863 + L1MC4 LINE L1 6604 6703 -1339 292 308 20 0 chr6 128081030 128081150 -61198404 - L1ME LINE L1 -504 5658 5536 2068 135 0 0 chr6 128081245 128081533 -61198021 + AluSx SINE Alu 6 293 -19 608 302 45 89 chr6 128081551 128082096 -61197458 - L1ME LINE L1 -751 5395 4874 1633 191 6 35 chr6 128082096 128082415 -61197139 - AluJo SINE Alu -2 310 1 608 302 45 89 chr6 128082415 128082428 -61197126 - L1ME LINE L1 -1272 4874 4862 229 311 68 6 chr6 128082472 128082649 -61196905 - L1ME LINE L1 -1328 4818 4631 920 187 22 6 chr6 128083165 128083347 -61196207 - MER5A DNA MER1_type 0 189 5 682 157 15 22 chr6 128083478 128083612 -61195942 + FLAM_C SINE Alu 1 133 0 440 250 47 34 chr6 128084327 128084475 -61195079 + MIR SINE MIR 20 169 -93 1258 193 108 29 chr6 128084920 128085329 -61194225 - HsTC2 DNA Tc2 0 1898 1282 277 227 273 0 chr6 128085327 128085437 -61194117 - HsTC2 DNA Tc2 -1754 144 5 * 1745 126 51 39 chr6 128086282 128086615 -61192939 - MER1B DNA MER1_type 0 337 1 2080 131 3 0 chr6 128086709 128087006 -61192548 + AluSq SINE Alu 1 298 -15 27 0 0 0 chr6 128087013 128087040 -61192514 + AT_rich Low_complexity Low_complexity 1 27 0 2182 127 0 0 chr6 128087271 128087570 -61191984 - AluSx SINE Alu -13 299 1 225 65 0 0 chr6 128087570 128087601 -61191953 + (T)n Simple_repeat Simple_repeat 1 31 0 1134 128 0 6 chr6 128087633 128087789 -61191765 - AluSq SINE Alu -95 218 64 2141 130 0 13 chr6 128089484 128089800 -61189754 - AluSx SINE Alu 0 312 1 320 289 47 13 chr6 128089955 128090190 -61189364 - L1ME LINE L1 -646 5518 5276 448 286 75 46 chr6 128090580 128091036 -61188518 + MLT1H LTR MaLR 1 549 0 361 286 67 46 chr6 128091115 128091353 -61188201 + MLT1J LTR MaLR 36 278 -233 854 229 0 0 chr6 128091733 128091899 -61187655 + FRAM SINE Alu 1 166 0 1433 173 34 11 chr6 128091998 128092264 -61187290 + AluJo SINE Alu 5 276 -36 211 104 62 0 chr6 128092282 128092330 -61187224 + (TA)n Simple_repeat Simple_repeat 1 51 0 603 208 28 15 chr6 128092453 128092576 -61186978 + CT-rich Low_complexity Low_complexity 1 121 -601 2067 92 33 0 chr6 128092576 128092849 -61186705 - AluSq SINE Alu -7 306 25 603 208 28 15 chr6 128092849 128092867 -61186687 + CT-rich Low_complexity Low_complexity 121 137 -585 1326 33 6 22 chr6 128092867 128093049 -61186505 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 603 208 28 15 chr6 128093049 128093166 -61186388 + CT-rich Low_complexity Low_complexity 137 722 0 396 0 0 0 chr6 128093182 128093226 -61186328 + (TG)n Simple_repeat Simple_repeat 2 45 0 756 277 66 73 chr6 128093333 128093755 -61185799 + MLT1J1 LTR MaLR 26 444 -2 818 130 1 6 chr6 128093763 128093915 -61185639 + L1PA14 LINE L1 5891 6038 -123 239 269 9 37 chr6 128094117 128094225 -61185329 + CT-rich Low_complexity Low_complexity 3 107 0 2105 144 0 0 chr6 128094309 128094639 -61184915 - AluSx SINE Alu 0 312 1 279 83 50 0 chr6 128095121 128095181 -61184373 + (TA)n Simple_repeat Simple_repeat 2 64 0 681 75 9 9 chr6 128095447 128095553 -61184001 + L1PA14 LINE L1 5912 6017 -144 230 217 29 0 chr6 128095599 128095668 -61183886 + (TA)n Simple_repeat Simple_repeat 2 72 0 745 214 6 60 chr6 128095689 128095871 -61183683 - MIR SINE MIR -81 181 10 192 40 0 0 chr6 128096503 128096528 -61183026 + (CAA)n Simple_repeat Simple_repeat 2 26 0 725 58 0 19 chr6 128096733 128096837 -61182717 + (TTTC)n Simple_repeat Simple_repeat 2 103 0 450 36 0 0 chr6 128099533 128099589 -61179965 + (TG)n Simple_repeat Simple_repeat 2 57 0 276 158 40 40 chr6 128100016 128100092 -61179462 + T-rich Low_complexity Low_complexity 5 80 0 2328 91 3 0 chr6 128100163 128100460 -61179094 + AluSg SINE Alu 1 298 -12 185 260 40 0 chr6 128100558 128100608 -61178946 + L2 LINE L2 3262 3313 0 202 57 0 57 chr6 128102721 128102756 -61176798 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 778 162 0 8 chr6 128102759 128102876 -61176678 - FLAM_C SINE Alu -17 116 1 333 68 0 0 chr6 128103078 128103122 -61176432 + (ATG)n Simple_repeat Simple_repeat 2 45 0 259 237 29 93 chr6 128103345 128103484 -61176070 - MLT1K LTR MaLR -1 587 458 288 327 26 45 chr6 128103745 128103901 -61175653 - MLT1K LTR MaLR -251 337 185 2138 138 0 0 chr6 128104193 128104504 -61175050 + AluSx SINE Alu 1 311 -1 845 148 0 77 chr6 128105281 128105436 -61174118 + FLAM_C SINE Alu 1 143 0 189 372 7 40 chr6 128105998 128106146 -61173408 - L2 LINE L2 -10 3303 3161 279 316 47 105 chr6 128106236 128106426 -61173128 - L2 LINE L2 -29 3243 3065 351 206 0 14 chr6 128106442 128106515 -61173039 - MER20 DNA MER1_type -147 72 1 601 155 116 0 chr6 128106932 128107061 -61172493 + MER69 DNA AcHobo 2380 2523 -3 224 389 65 9 chr6 128107173 128107281 -61172273 + L3b LINE CR1 1470 1583 0 298 227 0 15 chr6 128107651 128107717 -61171837 + MIR3 SINE MIR 10 74 -134 2139 138 36 33 chr6 128107806 128108169 -61171385 - THE1B LTR MaLR 0 364 1 530 224 94 47 chr6 128108483 128108522 -61171032 + MER5B DNA MER1_type 1 37 -141 3249 55 2 100 chr6 128108522 128108798 -61170756 - MLT2A1 LTR ERVL 0 444 235 2123 120 0 3 chr6 128108798 128109090 -61170464 - AluSx SINE Alu -21 291 1 3249 55 2 100 chr6 128109090 128109305 -61170249 - MLT2A1 LTR ERVL -209 235 1 530 224 94 47 chr6 128109305 128109435 -61170119 + MER5B DNA MER1_type 37 178 0 2060 125 0 3 chr6 128109569 128109857 -61169697 + AluSq SINE Alu 11 297 -16 1420 264 124 53 chr6 128109876 128110519 -61169035 + MER115 DNA AcHobo 3 691 -2 689 305 15 5 chr6 128112205 128112402 -61167152 + MIR SINE MIR 20 218 -44 1517 135 159 0 chr6 128112624 128112876 -61166678 + AluSx SINE Alu 1 292 -10 225 0 0 0 chr6 128114350 128114375 -61165179 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 191 358 34 27 chr6 128114883 128115031 -61164523 - L3b LINE CR1 -113 1470 1322 1906 125 144 6 chr6 128115099 128115459 -61164095 + MSTA LTR MaLR 1 410 -18 845 293 89 30 chr6 128115518 128115971 -61163583 + L2 LINE L2 2754 3251 -62 1620 197 22 70 chr6 128115971 128116387 -61163167 + MSTD LTR MaLR 1 396 0 845 293 89 30 chr6 128116387 128116445 -61163109 + L2 LINE L2 3251 3304 -9 203 240 40 0 chr6 128116417 128116467 -61163087 - L2 LINE L2 0 3313 3262 * 2074 162 0 0 chr6 128116686 128116994 -61162560 - AluSx SINE Alu -4 308 1 229 293 113 19 chr6 128117298 128117404 -61162150 + L2 LINE L2 3146 3261 -11 318 242 33 33 chr6 128117595 128117686 -61161868 - L1MC4 LINE L1 -1339 6703 6613 231 36 0 0 chr6 128117975 128118003 -61161551 + (GA)n Simple_repeat Simple_repeat 1 28 0 200 220 147 37 chr6 128119150 128119259 -61160295 + MIR SINE MIR 82 202 -60 210 321 28 46 chr6 128119525 128119634 -61159920 + L2 LINE L2 2568 2674 -640 224 282 110 92 chr6 128120092 128120255 -61159299 + L2 LINE L2 3107 3272 0 7309 1 0 0 chr6 128120308 128121156 -61158398 - L1HS LINE L1 0 6155 5308 7461 23 0 0 chr6 128121156 128122084 -61157470 + L1HS LINE L1 4382 5309 -837 296 229 239 9 chr6 128123667 128123776 -61155778 + MER94 DNA DNA 1 134 0 2338 110 0 0 chr6 128124054 128124363 -61155191 - AluSx SINE Alu -3 309 1 2809 90 0 5 chr6 128124634 128125011 -61154543 + THE1C LTR MaLR 1 375 0 447 19 0 0 chr6 128126245 128126297 -61153257 + (TG)n Simple_repeat Simple_repeat 2 53 0 767 178 0 0 chr6 128126832 128126950 -61152604 - FLAM_C SINE Alu -25 118 1 249 385 25 0 chr6 128127553 128127675 -61151879 - MIR SINE MIR -14 248 124 1739 183 44 152 chr6 128127839 128128617 -61150937 - LTR8A LTR ERV1 0 727 34 375 268 41 0 chr6 128129339 128129436 -61150118 + MIR SINE MIR 66 166 -96 226 275 28 101 chr6 128129737 128129915 -61149639 - MIR SINE MIR -50 212 48 1067 229 65 12 chr6 128130414 128130815 -61148739 + L1ME2 LINE L1 4349 4770 -1376 2368 216 96 62 chr6 128130857 128131689 -61147865 + L1ME2 LINE L1 5067 5938 -226 2325 109 6 3 chr6 128131689 128132000 -61147554 + AluSq SINE Alu 1 312 -1 2368 216 96 62 chr6 128132000 128132224 -61147330 + L1ME2 LINE L1 5938 6153 -11 524 200 68 42 chr6 128132536 128132726 -61146828 - L1MC5 LINE L1 -34 7927 7733 431 301 102 39 chr6 128132751 128133007 -61146547 + L2 LINE L2 2936 3207 -106 242 260 250 0 chr6 128133539 128133635 -61145919 - L2 LINE L2 -3 3310 3191 2387 110 0 0 chr6 128134083 128134393 -61145161 - AluSx SINE Alu -2 310 1 2093 120 3 0 chr6 128135932 128136255 -61143299 + AluSx SINE Alu 1 324 0 252 100 0 0 chr6 128136257 128136297 -61143257 + (TA)n Simple_repeat Simple_repeat 1 40 0 349 203 14 0 chr6 128136305 128136374 -61143180 - L1MCa LINE L1 -4362 2064 1995 350 264 23 0 chr6 128136386 128136473 -61143081 + L1MC4 LINE L1 6614 6702 -1340 701 324 112 51 chr6 128136561 128137635 -61141919 + L2 LINE L2 2041 3262 -10 1374 148 46 78 chr6 128138272 128138555 -61140999 + AluJo SINE Alu 23 296 -16 180 135 0 0 chr6 128138823 128138860 -61140694 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 397 214 22 11 chr6 128139304 128139393 -61140161 + MIR SINE MIR 79 168 -94 2350 89 0 0 chr6 128139522 128139814 -61139740 - AluSx SINE Alu -20 292 1 648 208 0 0 chr6 128140727 128140857 -61138697 + FLAM_A SINE Alu 12 141 -1 320 229 114 38 chr6 128141075 128141206 -61138348 + MLT1I LTR MaLR 15 155 -254 617 173 75 0 chr6 128141473 128141606 -61137948 - MLT1D LTR MaLR -298 207 65 1534 207 0 24 chr6 128143278 128143573 -61135981 - AluJo SINE Alu -24 288 1 237 316 79 43 chr6 128143636 128143775 -61135779 + MLT1K LTR MaLR 1 144 -444 291 322 52 26 chr6 128143864 128144094 -61135460 + MLT1K LTR MaLR 311 546 -42 237 154 0 0 chr6 128145019 128145058 -61134496 + Alu SINE Alu 252 290 -12 216 0 0 0 chr6 128145143 128145167 -61134387 + (CA)n Simple_repeat Simple_repeat 2 25 0 378 276 144 28 chr6 128146090 128146271 -61133283 - MIR SINE MIR -14 248 47 334 279 116 11 chr6 128146402 128146565 -61132989 + MIR3 SINE MIR 15 197 -11 912 182 0 0 chr6 128147406 128147549 -61132005 - AluJ SINE Alu -6 306 164 566 136 0 0 chr6 128147554 128147635 -61131919 + AluJ/FLAM SINE Alu 4 84 -228 995 134 76 13 chr6 128147635 128147792 -61131762 - AluJ SINE Alu -135 177 11 412 134 0 30 chr6 128147810 128147877 -61131677 - AluJ/FLAM SINE Alu -247 65 1 237 234 47 31 chr6 128148272 128148400 -61131154 - Charlie7 DNA MER1_type -18 2594 2465 31 58 0 0 chr6 128148404 128148456 -61131098 + AT_rich Low_complexity Low_complexity 1 52 0 271 307 139 7 chr6 128150665 128150802 -61128752 - MIR SINE MIR -86 176 22 215 263 35 0 chr6 128150980 128151037 -61128517 + L2 LINE L2 3205 3263 -9 1664 186 0 29 chr6 128151076 128151387 -61128167 + AluJo SINE Alu 1 302 -10 758 40 0 10 chr6 128151742 128151841 -61127713 + (TTTC)n Simple_repeat Simple_repeat 4 101 0 613 163 14 92 chr6 128151852 128151875 -61127679 - FLAM_A SINE Alu -169 133 110 2367 115 0 0 chr6 128151875 128152187 -61127367 - AluSq SINE Alu -1 312 1 613 163 14 92 chr6 128152187 128152304 -61127250 - FLAM_A SINE Alu -192 110 4 272 229 71 0 chr6 128153138 128153208 -61126346 + MIR SINE MIR 117 191 -71 305 232 30 20 chr6 128153208 128153307 -61126247 + (CATATA)n Simple_repeat Simple_repeat 3 102 0 2143 139 0 0 chr6 128153586 128153887 -61125667 + AluSx SINE Alu 1 301 -11 21 57 0 0 chr6 128155090 128155125 -61124429 + AT_rich Low_complexity Low_complexity 1 35 0 1554 168 22 19 chr6 128155156 128155424 -61124130 + AluJo SINE Alu 37 305 -7 2237 118 0 3 chr6 128155426 128155731 -61123823 + AluSq SINE Alu 1 304 -9 23 0 0 0 chr6 128156023 128156046 -61123508 + AT_rich Low_complexity Low_complexity 1 23 0 2325 92 7 3 chr6 128156369 128156673 -61122881 + AluSg SINE Alu 1 305 -5 547 277 75 33 chr6 128156934 128157147 -61122407 - MIR SINE MIR -38 224 3 2311 91 0 0 chr6 128158406 128158702 -61120852 + AluY SINE Alu 1 296 -15 1831 114 100 4 chr6 128159627 128159908 -61119646 - AluSx SINE Alu -4 308 1 186 43 0 0 chr6 128161004 128161027 -61118527 + (TA)n Simple_repeat Simple_repeat 1 23 0 2296 111 3 7 chr6 128161027 128161333 -61118221 - AluSx SINE Alu -7 305 1 2343 191 88 85 chr6 128162003 128162497 -61117057 + MLT1E1 LTR MaLR 1 499 -155 2369 97 0 3 chr6 128162497 128162808 -61116746 - AluSg SINE Alu 0 310 1 2343 191 88 85 chr6 128162808 128162963 -61116591 + MLT1E1 LTR MaLR 499 652 -2 203 327 59 52 chr6 128164144 128164297 -61115257 - MIR SINE MIR -62 200 47 864 285 70 63 chr6 128165119 128165578 -61113976 + LTR16B LTR ERVL 1 462 -2 2157 110 3 0 chr6 128166062 128166353 -61113201 + AluSx SINE Alu 1 292 -20 198 0 0 0 chr6 128166353 128166375 -61113179 + (TA)n Simple_repeat Simple_repeat 2 23 0 2276 107 3 7 chr6 128166875 128167183 -61112371 + AluSp SINE Alu 1 307 -6 328 272 37 12 chr6 128167608 128167689 -61111865 - MIR3 SINE MIR -49 159 77 1553 140 126 29 chr6 128167801 128167968 -61111586 - THE1C LTR MaLR 0 375 226 225 0 0 0 chr6 128167968 128167993 -61111561 + (GA)n Simple_repeat Simple_repeat 2 26 0 1553 140 126 29 chr6 128167993 128168167 -61111387 - THE1C LTR MaLR -149 226 1 206 291 55 0 chr6 128168278 128168333 -61111221 - L2 LINE L2 -94 3219 3162 746 304 73 4 chr6 128169409 128169809 -61109745 + L1ME4a LINE L1 5485 5825 -296 599 149 0 0 chr6 128171062 128171149 -61108405 + FLAM_A SINE Alu 20 106 -36 2125 148 0 0 chr6 128171181 128171472 -61108082 - AluJb SINE Alu -21 291 1 2489 72 0 3 chr6 128171510 128171814 -61107740 + AluY SINE Alu 1 303 -8 181 212 0 0 chr6 128172291 128172324 -61107230 + L2 LINE L2 3262 3294 -19 1098 361 119 24 chr6 128172667 128174092 -61105462 + L2 LINE L2 928 2496 -818 342 67 0 0 chr6 128174092 128174137 -61105417 + (CA)n Simple_repeat Simple_repeat 1 45 0 1098 361 119 24 chr6 128174137 128174167 -61105387 + L2 LINE L2 2496 2522 -792 2436 99 0 3 chr6 128175063 128175375 -61104179 - AluY SINE Alu 0 311 1 230 49 0 49 chr6 128175427 128175468 -61104086 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 1063 138 11 58 chr6 128175480 128175669 -61103885 - AluSq SINE Alu -8 305 126 1161 165 117 19 chr6 128175802 128176068 -61103486 + Tigger3(Golem) DNA MER2_type 2477 2768 -261 873 153 0 0 chr6 128176068 128176205 -61103349 - FLAM_C SINE Alu -6 137 1 1327 163 120 0 chr6 128176205 128176463 -61103091 + Tigger3(Golem) DNA MER2_type 2740 3028 -1 210 237 132 0 chr6 128177635 128177711 -61101843 - MIR3 SINE MIR -10 198 113 1642 172 13 30 chr6 128178188 128178490 -61101064 + AluJo SINE Alu 1 297 -15 369 0 0 0 chr6 128178534 128178575 -61100979 + (CA)n Simple_repeat Simple_repeat 2 42 0 2521 82 0 0 chr6 128179901 128180206 -61099348 - AluSg SINE Alu -5 305 1 2109 129 10 0 chr6 128180750 128181059 -61098495 + AluSx SINE Alu 1 312 0 624 106 0 0 chr6 128181078 128181172 -61098382 + (GGAA)n Simple_repeat Simple_repeat 2 95 0 1171 50 11 22 chr6 128181181 128181360 -61098194 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 21 36 0 0 chr6 128181794 128181822 -61097732 + AT_rich Low_complexity Low_complexity 1 28 0 2431 83 3 0 chr6 128182273 128182575 -61096979 + AluSp SINE Alu 3 305 -8 504 181 29 148 chr6 128182629 128182872 -61096682 - MIR SINE MIR -4 258 45 536 238 14 20 chr6 128184545 128184692 -61094862 - MIR SINE MIR -6 256 111 2216 132 0 0 chr6 128184945 128185255 -61094299 - AluSx SINE Alu -2 310 1 197 328 48 56 chr6 128185972 128186097 -61093457 + L2 LINE L2 3141 3264 -8 302 45 23 0 chr6 128186278 128186322 -61093232 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 438 154 0 0 chr6 128186784 128186862 -61092692 + GA-rich Low_complexity Low_complexity 4 81 0 1099 198 11 0 chr6 128187792 128187979 -61091575 - MER5A DNA MER1_type 0 189 1 797 216 0 0 chr6 128189171 128189305 -61090249 - AluJo SINE Alu -177 135 2 390 216 80 40 chr6 128189563 128189688 -61089866 + MER58C DNA MER1_type 75 204 -11 1649 169 0 66 chr6 128189688 128190007 -61089547 + AluJb SINE Alu 1 298 -14 2022 98 42 3 chr6 128190008 128190293 -61089261 + AluSq SINE Alu 1 296 -17 1610 213 55 3 chr6 128190496 128190839 -61088715 + MLT1A1 LTR MaLR 4 364 -1 1874 163 3 10 chr6 128191022 128191317 -61088237 - AluSx SINE Alu -19 293 1 1308 233 99 48 chr6 128191404 128191920 -61087634 + MLT1F LTR MaLR 1 542 0 220 289 0 0 chr6 128192341 128192393 -61087161 + (CA)n Simple_repeat Simple_repeat 1 52 0 1658 168 25 11 chr6 128192633 128192946 -61086608 + AluJb SINE Alu 1 317 0 186 148 0 0 chr6 128193097 128193124 -61086430 + MIR SINE MIR 20 46 -216 2130 117 0 3 chr6 128193339 128193638 -61085916 + AluSx SINE Alu 3 300 -12 404 308 105 6 chr6 128193789 128193961 -61085593 + MIR SINE MIR 31 219 -43 267 339 87 0 chr6 128193975 128194090 -61085464 + L2 LINE L2 3189 3313 0 815 229 0 45 chr6 128194093 128194272 -61085282 + FRAM SINE Alu 1 171 -5 867 142 7 28 chr6 128194319 128194460 -61085094 - FLAM_C SINE Alu -4 139 2 28 0 0 0 chr6 128194520 128194548 -61085006 + AT_rich Low_complexity Low_complexity 1 28 0 2790 198 20 61 chr6 128194554 128194773 -61084781 + L1MA9 LINE L1 2467 2693 -3453 1766 164 3 50 chr6 128194773 128195096 -61084458 - AluJb SINE Alu -4 308 1 2790 198 20 61 chr6 128195096 128195585 -61083969 + L1MA9 LINE L1 2693 3146 -3000 * 5731 159 29 40 chr6 128195566 128196710 -61082844 + L1MA9 LINE L1 4781 5916 -396 2368 91 3 3 chr6 128196710 128197017 -61082537 + AluSg SINE Alu 1 307 -3 5731 159 29 40 chr6 128197017 128197410 -61082144 + L1MA9 LINE L1 5916 6312 0 2053 122 7 7 chr6 128197460 128197754 -61081800 + AluSg1 SINE Alu 1 294 -15 1983 129 0 60 chr6 128198324 128198642 -61080912 - AluSx SINE Alu -13 299 1 792 357 72 6 chr6 128198762 128199261 -61080293 - MLT1K LTR MaLR -22 566 35 23 33 0 0 chr6 128199612 128199642 -61079912 + AT_rich Low_complexity Low_complexity 1 30 0 1104 191 93 8 chr6 128201390 128201626 -61077928 - AluJo SINE Alu -56 256 1 1281 201 88 19 chr6 128201629 128201937 -61077617 - MLT1D LTR MaLR -175 330 2 1901 101 94 0 chr6 128202176 128202443 -61077111 + AluSp SINE Alu 1 292 -21 1852 152 20 10 chr6 128202443 128202740 -61076814 + AluSx SINE Alu 1 300 -12 2201 116 3 0 chr6 128203214 128203517 -61076037 + AluSx SINE Alu 1 304 -8 2228 104 14 0 chr6 128203517 128203806 -61075748 + AluSx SINE Alu 1 293 -19 2421 83 0 10 chr6 128204056 128204368 -61075186 + AluSx SINE Alu 1 309 -3 2223 97 10 0 chr6 128204626 128204924 -61074630 + AluSp SINE Alu 2 302 -11 25 0 0 0 chr6 128205678 128205703 -61073851 + AT_rich Low_complexity Low_complexity 1 25 0 23 78 0 0 chr6 128205730 128205781 -61073773 + AT_rich Low_complexity Low_complexity 1 51 0 691 188 8 8 chr6 128206166 128206283 -61073271 + FLAM_C SINE Alu 2 118 -15 21 0 0 0 chr6 128206290 128206311 -61073243 + AT_rich Low_complexity Low_complexity 1 21 0 1710 169 0 11 chr6 128206359 128206668 -61072886 - AluJb SINE Alu 0 306 1 706 234 35 55 chr6 128206679 128206880 -61072674 - MIR SINE MIR -46 216 20 752 220 0 50 chr6 128206929 128207070 -61072484 + FRAM SINE Alu 3 136 -40 215 0 67 0 chr6 128207074 128207104 -61072450 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 605 125 0 0 chr6 128207588 128207676 -61071878 + FLAM_C SINE Alu 49 136 -7 186 250 19 0 chr6 128207948 128208000 -61071554 - L2 LINE L2 -5 3267 3215 963 218 6 28 chr6 128208006 128208185 -61071369 - MER45A DNA AcHobo -3 175 1 355 333 79 44 chr6 128208347 128208689 -61070865 + L2 LINE L2 2541 2894 -420 362 119 0 0 chr6 128209128 128209196 -61070358 + Alu SINE Alu 2 48 -253 293 356 0 0 chr6 128209611 128209712 -61069842 - L2 LINE L2 0 3272 3172 2089 95 0 0 chr6 128209759 128210022 -61069532 + AluSc SINE Alu 1 263 -46 209 29 0 57 chr6 128210071 128210106 -61069448 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 257 300 67 56 chr6 128210367 128210547 -61069007 - MIR SINE MIR -46 216 35 2135 112 30 0 chr6 128211056 128211352 -61068202 - AluSg SINE Alu -5 305 1 193 245 112 31 chr6 128211507 128211605 -61067949 - L2 LINE L2 -4 3309 3204 424 305 110 15 chr6 128211640 128211840 -61067714 - MIR SINE MIR -37 225 7 770 62 1 5 chr6 128213030 128213140 -61066414 + L1PA4 LINE L1 6049 6155 0 261 352 27 16 chr6 128213334 128213489 -61066065 - MIR SINE MIR -38 224 65 251 203 0 0 chr6 128213775 128213834 -61065720 - LTR66 LTR ERVL -172 438 380 * 2587 127 2 20 chr6 128213825 128214228 -61065326 - MER65A LTR ERV1 -49 396 1 2282 85 0 0 chr6 128214693 128214974 -61064580 - AluSg SINE Alu -29 281 1 241 317 145 14 chr6 128214996 128215141 -61064413 - MIR SINE MIR -93 169 6 743 234 0 0 chr6 128215242 128215366 -61064188 + FLAM_A SINE Alu 1 124 -9 1294 147 4 43 chr6 128215379 128215610 -61063944 + L1PA16 LINE L1 5945 6166 0 524 122 14 0 chr6 128215633 128215707 -61063847 - AluS SINE Alu -236 76 2 2219 129 3 0 chr6 128215716 128216067 -61063487 - AluSg SINE Alu 0 352 1 350 334 112 65 chr6 128216181 128216537 -61063017 - L2 LINE L2 -4 3268 2896 221 213 0 33 chr6 128216776 128216837 -61062717 + GA-rich Low_complexity Low_complexity 1 59 0 260 297 19 119 chr6 128217043 128217312 -61062242 - L2 LINE L2 -98 3174 2933 2309 46 50 0 chr6 128217508 128217789 -61061765 + AluY SINE Alu 2 296 -15 2093 133 3 0 chr6 128217799 128218100 -61061454 - AluSp SINE Alu -11 302 1 2445 81 3 0 chr6 128218148 128218458 -61061096 - AluSp SINE Alu -2 311 1 372 309 116 22 chr6 128218687 128218868 -61060686 - MIR SINE MIR -8 254 57 309 266 65 59 chr6 128219066 128219235 -61060319 - L2 LINE L2 -1316 1998 1829 1630 142 4 41 chr6 128219699 128219966 -61059588 + AluJb SINE Alu 1 257 -55 429 185 15 0 chr6 128219966 128220031 -61059523 - AluS SINE Alu -246 67 2 204 97 0 0 chr6 128220267 128220298 -61059256 + (TATATG)n Simple_repeat Simple_repeat 3 33 0 28 0 0 0 chr6 128220778 128220806 -61058748 + AT_rich Low_complexity Low_complexity 1 28 0 237 65 0 0 chr6 128220828 128220859 -61058695 + (TA)n Simple_repeat Simple_repeat 2 32 0 903 19 0 37 chr6 128220860 128220967 -61058587 - L1PA5 LINE L1 -11 6143 6041 2078 118 20 20 chr6 128221006 128221310 -61058244 + AluSx SINE Alu 1 304 -8 192 40 0 0 chr6 128221495 128221520 -61058034 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 2005 131 23 0 chr6 128222544 128222849 -61056705 - AluSp SINE Alu 0 313 2 1919 143 9 19 chr6 128223084 128223399 -61056155 - AluSx SINE Alu 0 312 1 1191 174 5 14 chr6 128224308 128224527 -61055027 + AluJo SINE Alu 87 303 -9 21 36 0 0 chr6 128224634 128224662 -61054892 + AT_rich Low_complexity Low_complexity 1 28 0 1125 202 26 40 chr6 128225296 128225524 -61054030 - AluJo SINE Alu -87 225 1 900 157 118 88 chr6 128225821 128226055 -61053499 + Charlie4 DNA MER1_type 8 233 -1728 1801 107 7 18 chr6 128226055 128226370 -61053184 - AluSc SINE Alu 0 313 2 900 157 118 88 chr6 128226370 128226467 -61053087 + Charlie4 DNA MER1_type 233 1793 -168 1209 128 37 0 chr6 128226488 128226675 -61052879 + AluSg SINE Alu 1 194 -116 1813 114 26 11 chr6 128226775 128227048 -61052506 + AluSp SINE Alu 34 310 -3 1963 141 10 0 chr6 128228109 128228399 -61051155 - AluSx SINE Alu -19 293 1 2023 142 13 7 chr6 128228564 128228874 -61050680 - AluSx SINE Alu 0 312 1 2339 91 7 0 chr6 128229685 128229993 -61049561 - AluSx SINE Alu 0 312 3 634 275 72 19 chr6 128230218 128230425 -61049129 + MIR SINE MIR 45 262 0 236 315 221 16 chr6 128230550 128230677 -61048877 + MER5B DNA MER1_type 2 154 -24 2079 145 0 16 chr6 128230692 128231009 -61048545 + AluSx SINE Alu 1 312 0 2014 139 7 0 chr6 128231058 128231346 -61048208 + AluSx SINE Alu 1 290 -22 2046 118 28 0 chr6 128231349 128231636 -61047918 + AluSx SINE Alu 1 295 -17 42 20 0 0 chr6 128232527 128232576 -61046978 + AT_rich Low_complexity Low_complexity 1 49 0 250 109 62 0 chr6 128232578 128232647 -61046907 + L1MB4 LINE L1 6108 6181 -2 847 131 0 8 chr6 128232695 128232817 -61046737 - FLAM_A SINE Alu -12 121 1 22 35 0 0 chr6 128232832 128232861 -61046693 + AT_rich Low_complexity Low_complexity 1 29 0 1599 162 22 18 chr6 128232886 128233210 -61046344 - AluJb SINE Alu 0 333 9 401 94 0 0 chr6 128233221 128233274 -61046280 + L1MB8 LINE L1 6116 6168 -10 2373 107 0 0 chr6 128233476 128233784 -61045770 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr6 128233798 128233819 -61045735 + AT_rich Low_complexity Low_complexity 1 21 0 2287 93 7 0 chr6 128234919 128235221 -61044333 + AluSp SINE Alu 2 305 -8 324 155 52 0 chr6 128235675 128235733 -61043821 - MIR SINE MIR -91 171 111 2515 116 27 14 chr6 128235931 128236301 -61043253 - L1PA11 LINE L1 -3 6171 5797 1918 137 6 43 chr6 128236330 128236652 -61042902 + AluJo SINE Alu 1 310 -2 272 109 87 0 chr6 128236660 128236706 -61042848 + L1MA8 LINE L1 6143 6192 -99 804 128 28 7 chr6 128236731 128236872 -61042682 + L1MA8 LINE L1 6143 6286 -5 24 0 0 0 chr6 128236874 128236898 -61042656 + AT_rich Low_complexity Low_complexity 1 24 0 522 312 32 16 chr6 128237316 128237409 -61042145 + MIR SINE MIR 40 130 -132 1970 132 44 52 chr6 128237409 128237530 -61042024 - MER46B DNA MER2_type -2495 236 116 369 0 0 0 chr6 128237530 128237571 -61041983 + (TTA)n Simple_repeat Simple_repeat 3 43 0 1648 188 0 21 chr6 128237574 128237861 -61041693 - AluJo SINE Alu -31 281 1 1970 132 44 52 chr6 128237861 128237963 -61041591 - MER46B DNA MER2_type -2617 114 13 506 0 54 0 chr6 128237963 128238037 -61041517 + (TA)n Simple_repeat Simple_repeat 1 78 0 1970 132 44 52 chr6 128238037 128238062 -61041492 - MER46B DNA MER2_type -2718 13 108 2033 134 10 3 chr6 128238062 128238360 -61041194 + AluSx SINE Alu 1 300 -12 1970 132 44 52 chr6 128238360 128238469 -61041085 - MER46B DNA MER2_type -2622 109 1 522 312 32 16 chr6 128238469 128238561 -61040993 + MIR SINE MIR 130 228 -34 208 333 53 0 chr6 128238596 128238671 -61040883 - L2 LINE L2 -3 3269 3191 228 388 39 10 chr6 128238892 128238995 -61040559 - L2 LINE L2 -60 3212 3107 1989 154 0 3 chr6 128239594 128239906 -61039648 + AluJb SINE Alu 1 311 -1 1716 143 13 58 chr6 128241157 128241465 -61038089 - AluJo SINE Alu -18 294 1 360 0 0 0 chr6 128241617 128241657 -61037897 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2266 93 0 0 chr6 128241661 128241941 -61037613 - AluSg SINE Alu -30 280 1 206 246 0 49 chr6 128242268 128242329 -61037225 + MIR SINE MIR 96 153 -109 1918 122 66 3 chr6 128242778 128243066 -61036488 - AluSx SINE Alu 0 312 7 308 292 15 36 chr6 128243245 128243382 -61036172 + MIR SINE MIR 5 138 -124 236 155 0 17 chr6 128243597 128243655 -61035899 + (CA)n Simple_repeat Simple_repeat 2 58 0 801 191 71 68 chr6 128243972 128244266 -61035288 + MER33 DNA MER1_type 12 306 -18 182 246 15 46 chr6 128244379 128244444 -61035110 + L2 LINE L2 3140 3202 -111 1175 254 204 16 chr6 128244770 128245502 -61034052 + L2 LINE L2 2425 3302 -11 514 121 0 0 chr6 128245502 128245568 -61033986 + AluS SINE Alu 2 67 -246 186 189 0 0 chr6 128245569 128245606 -61033948 + (CATA)n Simple_repeat Simple_repeat 4 40 0 334 146 0 0 chr6 128245737 128245792 -61033762 + FLAM_A SINE Alu 70 124 -9 2257 116 0 10 chr6 128245801 128246112 -61033442 + AluSx SINE Alu 1 308 -4 930 154 0 0 chr6 128246231 128246374 -61033180 - FLAM_C SINE Alu 0 143 1 217 263 50 38 chr6 128246510 128246590 -61032964 + L2 LINE L2 3187 3267 -5 985 134 0 61 chr6 128246623 128246787 -61032767 + AluJb SINE Alu 154 307 -5 1513 41 0 0 chr6 128246793 128246962 -61032592 - AluY SINE Alu -141 170 2 21 0 0 0 chr6 128247348 128247369 -61032185 + AT_rich Low_complexity Low_complexity 1 21 0 1259 117 0 0 chr6 128249410 128249581 -61029973 - AluSg/x SINE Alu -10 302 132 1807 125 23 10 chr6 128249622 128249926 -61029628 - AluY SINE Alu -3 308 1 935 199 29 6 chr6 128250078 128250249 -61029305 + MLT1C LTR MaLR 293 467 0 237 65 0 0 chr6 128250404 128250435 -61029119 + (TATG)n Simple_repeat Simple_repeat 1 31 0 786 136 49 86 chr6 128250437 128250599 -61028955 - AluJo SINE Alu -156 156 1 875 187 54 105 chr6 128250600 128250915 -61028639 - MER97b DNA MER1_type? -754 299 1 2216 103 3 13 chr6 128252234 128252546 -61027008 - AluSx SINE Alu -3 309 1 243 264 0 0 chr6 128252959 128253012 -61026542 + MER5A DNA MER1_type 17 69 -120 231 224 17 0 chr6 128253019 128253077 -61026477 + AluS SINE Alu 1 59 -244 240 163 0 0 chr6 128253485 128253528 -61026026 + CT-rich Low_complexity Low_complexity 2 44 0 190 214 126 48 chr6 128253532 128253635 -61025919 + MIR SINE MIR 150 260 -2 427 285 48 54 chr6 128253765 128253951 -61025603 - MIR3 SINE MIR -10 198 14 2250 86 7 13 chr6 128253997 128254301 -61025253 + AluY SINE Alu 1 302 -9 2257 80 0 3 chr6 128254301 128254613 -61024941 + AluY SINE Alu 1 311 0 1727 214 86 71 chr6 128255860 128256179 -61023375 + MER97b DNA MER1_type? 1 314 -739 1446 171 46 46 chr6 128256179 128256484 -61023070 + AluJo SINE Alu 5 309 -3 1727 214 86 71 chr6 128256484 128256660 -61022894 + MER97b DNA MER1_type? 314 509 -544 2173 89 43 17 chr6 128256660 128256962 -61022592 + AluSq SINE Alu 1 310 -3 1727 214 86 71 chr6 128256962 128257081 -61022473 + MER97b DNA MER1_type? 509 625 -428 205 58 14 101 chr6 128257129 128257198 -61022356 + (TTA)n Simple_repeat Simple_repeat 2 64 0 238 249 133 30 chr6 128257249 128257482 -61022072 + MER97c DNA MER1_type? 834 1090 0 182 288 76 0 chr6 128257535 128257601 -61021953 - L2 LINE L2 -23 3249 3179 21 0 0 0 chr6 128258132 128258153 -61021401 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr6 128258166 128258195 -61021359 + (CA)n Simple_repeat Simple_repeat 2 30 0 368 244 11 0 chr6 128260359 128260449 -61019105 + L1MB3 LINE L1 5593 5683 -488 821 202 12 54 chr6 128260454 128260622 -61018932 - MER8 DNA MER2_type -69 170 10 1947 102 95 0 chr6 128260633 128260916 -61018638 - AluSp SINE Alu -3 310 1 3072 136 37 6 chr6 128260926 128261411 -61018143 + L1MB3 LINE L1 5682 6181 -2 2251 125 42 33 chr6 128261677 128262038 -61017516 - THE1B LTR MaLR 0 364 1 220 304 77 60 chr6 128262396 128262564 -61016990 - MIR SINE MIR -61 201 31 2324 94 0 3 chr6 128263752 128264061 -61015493 - AluY SINE Alu -1 310 3 6444 145 16 37 chr6 128264063 128264980 -61014574 - L1MA4A LINE L1 -2 6301 5366 2304 109 3 3 chr6 128264980 128265293 -61014261 - AluSp SINE Alu 0 313 1 6444 145 16 37 chr6 128265293 128266203 -61013351 - L1MA4A LINE L1 -937 5366 4438 558 54 0 0 chr6 128266203 128266277 -61013277 + (TTCTC)n Simple_repeat Simple_repeat 4 77 0 1891 135 11 14 chr6 128266282 128266428 -61013126 - AluSx SINE Alu -31 281 135 2354 86 7 0 chr6 128266428 128266731 -61012823 - AluY SINE Alu -6 305 1 1891 135 11 14 chr6 128266731 128266866 -61012688 - AluSx SINE Alu -177 135 1 6444 145 16 37 chr6 128266866 128267054 -61012500 - L1MA4A LINE L1 -1869 4434 4327 2334 108 0 10 chr6 128267054 128267368 -61012186 - AluSx SINE Alu -1 311 1 6444 145 16 37 chr6 128267368 128267567 -61011987 - L1MA4A LINE L1 -1976 4327 4125 420 193 81 112 chr6 128267563 128267656 -61011898 - L1 LINE L1 -1887 4259 4165 * 2227 90 0 40 chr6 128267656 128267979 -61011575 - AluY SINE Alu -1 310 1 186 43 0 0 chr6 128267982 128268005 -61011549 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 420 193 81 112 chr6 128268005 128268068 -61011486 - L1 LINE L1 -1983 4163 4104 423 300 133 6 chr6 128268228 128268408 -61011146 - MIR SINE MIR -12 250 48 2077 128 3 0 chr6 128269113 128269403 -61010151 - AluSx SINE Alu -21 291 1 587 195 0 65 chr6 128269692 128269749 -61009805 + MER5B DNA MER1_type 2 49 -129 1558 143 3 94 chr6 128269749 128270091 -61009463 + AluJb SINE Alu 3 316 0 587 195 0 65 chr6 128270091 128270155 -61009399 + MER5B DNA MER1_type 49 116 -62 294 250 0 0 chr6 128270590 128270650 -61008904 - MER5A DNA MER1_type -3 186 127 722 176 0 72 chr6 128270650 128270803 -61008751 + FLAM_C SINE Alu 2 143 0 407 197 14 0 chr6 128270803 128270874 -61008680 - MER5A DNA MER1_type -52 137 66 800 95 0 0 chr6 128270874 128270979 -61008575 - AluSp/q SINE Alu -9 304 200 596 199 17 17 chr6 128271180 128271361 -61008193 - AluY SINE Alu -129 182 2 32 26 0 0 chr6 128271493 128271532 -61008022 + AT_rich Low_complexity Low_complexity 1 39 0 1380 194 9 72 chr6 128271532 128271852 -61007702 - AluJo SINE Alu -12 300 1 718 276 41 24 chr6 128272349 128272595 -61006959 - MIR SINE MIR 0 262 13 462 217 0 0 chr6 128272772 128272892 -61006662 + (TA)n Simple_repeat Simple_repeat 2 121 0 279 0 0 0 chr6 128272892 128272923 -61006631 + (GA)n Simple_repeat Simple_repeat 2 32 0 1216 136 0 0 chr6 128272937 128273106 -61006448 + AluSp SINE Alu 132 300 -13 1379 137 13 4 chr6 128273133 128273359 -61006195 + L1MB7 LINE L1 5948 6175 -9 207 200 0 0 chr6 128273667 128273702 -61005852 + (TATATG)n Simple_repeat Simple_repeat 3 37 0 265 288 46 55 chr6 128273702 128273921 -61005633 - L1ME LINE L1 -384 5737 5521 956 132 0 0 chr6 128274285 128274429 -61005125 - AluSg/x SINE Alu 0 310 167 1838 192 64 3 chr6 128274478 128274822 -61004732 + MLT1A1 LTR MaLR 1 365 0 879 286 53 46 chr6 128274993 128275448 -61004106 + MLT1J LTR MaLR 40 497 -14 198 266 106 21 chr6 128275454 128275548 -61004006 - L2 LINE L2 -236 3036 2935 1605 207 125 11 chr6 128275696 128276073 -61003481 - MLT1F LTR MaLR 0 542 123 1849 155 3 17 chr6 128276256 128276552 -61003002 + AluJo SINE Alu 1 292 -20 1933 136 3 46 chr6 128278471 128278795 -61000759 + AluSx SINE Alu 1 310 -2 506 276 52 43 chr6 128279719 128279929 -60999625 + MIR SINE MIR 47 258 -4 646 174 81 50 chr6 128280099 128280260 -60999294 - FRAM SINE Alu 0 166 1 2377 96 0 3 chr6 128280276 128280589 -60998965 - AluSx SINE Alu 0 312 1 1895 143 11 0 chr6 128280875 128281191 -60998363 + AluSx SINE Alu 7 325 0 362 293 136 30 chr6 128281209 128281407 -60998147 + MIR SINE MIR 31 249 -13 321 305 109 16 chr6 128281506 128281634 -60997920 + MIR SINE MIR 86 225 -37 269 283 94 19 chr6 128282660 128282707 -60996847 + MIR SINE MIR 128 170 -92 2281 130 0 9 chr6 128282707 128283022 -60996532 + AluSx SINE Alu 1 312 0 269 283 94 19 chr6 128283022 128283080 -60996474 + MIR SINE MIR 170 241 -21 2206 103 0 13 chr6 128283270 128283570 -60995984 + AluSq SINE Alu 1 296 -17 208 315 48 34 chr6 128283703 128283849 -60995705 + MIR SINE MIR 65 212 -50 543 226 16 32 chr6 128284030 128284154 -60995400 + FLAM_A SINE Alu 5 126 -7 261 259 85 116 chr6 128284288 128284512 -60995042 + MIR SINE MIR 45 261 -1 533 260 0 0 chr6 128286125 128286248 -60993306 - U3 snRNA snRNA -94 123 1 1499 199 0 56 chr6 128286335 128286637 -60992917 - AluJb SINE Alu -27 285 1 223 417 0 0 chr6 128287607 128287679 -60991875 + C-rich Low_complexity Low_complexity 1 72 0 318 187 0 3 chr6 128287724 128287785 -60991769 + FLAM_A SINE Alu 69 118 -15 34 24 0 0 chr6 128287797 128287838 -60991716 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr6 128287838 128287858 -60991696 + (T)n Simple_repeat Simple_repeat 1 20 0 1715 192 3 7 chr6 128287861 128288153 -60991401 + AluJo SINE Alu 1 291 -21 33 25 0 0 chr6 128288153 128288193 -60991361 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr6 128289564 128289589 -60989965 + AT_rich Low_complexity Low_complexity 1 25 0 342 0 0 0 chr6 128289686 128289724 -60989830 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2087 106 0 7 chr6 128289728 128290011 -60989543 - AluSx SINE Alu -31 281 1 1706 129 8 4 chr6 128290164 128290428 -60989126 - AluSx SINE Alu 0 306 42 2273 104 0 0 chr6 128290628 128290926 -60988628 + AluSx SINE Alu 1 298 -14 1169 159 60 36 chr6 128291489 128291791 -60987763 - L1MA9 LINE L1 -8 6304 5996 1126 148 22 0 chr6 128291836 128292019 -60987535 + AluSx SINE Alu 1 187 -125 213 313 12 24 chr6 128292219 128292302 -60987252 - MIR SINE MIR -62 146 65 269 135 19 0 chr6 128292572 128292624 -60986930 + (TA)n Simple_repeat Simple_repeat 1 53 0 2390 127 2 20 chr6 128292638 128293041 -60986513 - MER65A LTR ERV1 -49 396 1 2270 85 0 0 chr6 128293506 128293787 -60985767 - AluSg SINE Alu -29 281 1 256 317 145 14 chr6 128293809 128293954 -60985600 - MIR SINE MIR -93 169 6 697 234 0 0 chr6 128294055 128294179 -60985375 + FLAM_A SINE Alu 1 124 -9 1203 152 5 23 chr6 128294192 128294409 -60985145 + L1PA16 LINE L1 5945 6157 -9 493 120 13 0 chr6 128294446 128294521 -60985033 - AluS SINE Alu -236 76 1 2232 129 3 0 chr6 128294529 128294880 -60984674 - AluSg SINE Alu 0 352 1 367 334 112 65 chr6 128294994 128295350 -60984204 - L2 LINE L2 -4 3268 2896 221 213 0 33 chr6 128295589 128295650 -60983904 + GA-rich Low_complexity Low_complexity 1 59 0 282 294 19 119 chr6 128295856 128296125 -60983429 - L2 LINE L2 -98 3174 2933 2145 48 52 0 chr6 128296321 128296589 -60982965 + AluY SINE Alu 2 283 -28 181 212 0 0 chr6 128297086 128297119 -60982435 + L2 LINE L2 3262 3294 -19 1094 360 123 27 chr6 128297462 128298886 -60980668 + L2 LINE L2 928 2496 -818 342 67 0 0 chr6 128298886 128298931 -60980623 + (CA)n Simple_repeat Simple_repeat 1 45 0 1094 360 123 27 chr6 128298931 128298961 -60980593 + L2 LINE L2 2496 2522 -792 2381 87 3 3 chr6 128299938 128300247 -60979307 - AluSg SINE Alu -1 309 1 2226 97 7 3 chr6 128300247 128300545 -60979009 - AluSx SINE Alu -13 299 1 474 324 141 9 chr6 128300602 128300815 -60978739 - L2 LINE L2 -3 3269 3029 236 248 324 0 chr6 128300907 128301012 -60978542 - MIR SINE MIR 0 262 124 909 257 47 15 chr6 128301081 128301463 -60978091 + MLT1H1 LTR MaLR 100 578 -12 333 348 135 22 chr6 128301630 128301860 -60977694 - L2 LINE L2 -458 2856 2601 210 143 0 0 chr6 128302115 128302150 -60977404 + (TTCCC)n Simple_repeat Simple_repeat 4 38 0 479 250 112 31 chr6 128302205 128302429 -60977125 + L1MC4 LINE L1 6462 6703 -1339 300 282 47 0 chr6 128302437 128302522 -60977032 - L1MC4 LINE L1 -1339 6703 6615 2049 261 75 74 chr6 128302535 128302992 -60976562 + L1MC4 LINE L1 6614 7069 -973 490 183 8 16 chr6 128302992 128303118 -60976436 + L1MA4 LINE L1 6174 6298 -2 1695 212 0 0 chr6 128303124 128303431 -60976123 + AluJb SINE Alu 1 307 -5 2049 261 75 74 chr6 128303431 128303843 -60975711 + L1MC4 LINE L1 7073 7483 -559 2142 109 7 3 chr6 128303843 128304136 -60975418 + AluSx SINE Alu 1 294 -18 2049 261 75 74 chr6 128304136 128304165 -60975389 + L1MC4 LINE L1 7483 7510 -532 1872 151 6 50 chr6 128304165 128304484 -60975070 + AluSx SINE Alu 1 305 -7 2049 261 75 74 chr6 128304484 128304537 -60975017 + L1MC4 LINE L1 7510 7561 -481 324 0 0 0 chr6 128304537 128304573 -60974981 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1653 156 0 52 chr6 128304580 128304869 -60974685 - AluSx SINE Alu -38 274 1 2049 261 75 74 chr6 128304869 128305134 -60974420 + L1MC4 LINE L1 7566 7849 -193 183 114 0 0 chr6 128305416 128305451 -60974103 + (T)n Simple_repeat Simple_repeat 1 35 0 642 233 23 0 chr6 128305455 128305584 -60973970 - FLAM_A SINE Alu -1 132 1 2021 116 10 10 chr6 128305831 128306125 -60973429 + AluSq SINE Alu 1 294 -19 1510 166 67 28 chr6 128306157 128306441 -60973113 + AluJo SINE Alu 12 306 -6 27 0 0 0 chr6 128307322 128307349 -60972205 + AT_rich Low_complexity Low_complexity 1 27 0 2166 109 3 0 chr6 128307356 128307671 -60971883 + AluSx SINE Alu 3 318 0 697 190 0 0 chr6 128307671 128307787 -60971767 - AluJo/FLAM SINE Alu -184 118 3 331 309 58 61 chr6 128307980 128308274 -60971280 + MLT1I LTR MaLR 68 360 -49 339 289 0 58 chr6 128308320 128308424 -60971130 - MIR SINE MIR -91 117 20 1861 122 3 70 chr6 128309344 128309480 -60970074 + AluSx SINE Alu 1 145 -167 2704 13 0 10 chr6 128309480 128309788 -60969766 + AluYb8 SINE Alu 1 305 -13 1861 122 3 70 chr6 128309788 128309978 -60969576 + AluSx SINE Alu 145 305 -7 591 223 131 0 chr6 128310284 128310414 -60969140 + FRAM SINE Alu 1 146 -30 340 211 33 33 chr6 128310442 128310622 -60968932 + (TA)n Simple_repeat Simple_repeat 1 180 0 423 116 16 54 chr6 128310641 128310770 -60968784 + (TA)n Simple_repeat Simple_repeat 2 125 0 30 0 0 0 chr6 128311626 128311656 -60967898 + AT_rich Low_complexity Low_complexity 1 30 0 1057 65 18 18 chr6 128311748 128311918 -60967636 + (TTTC)n Simple_repeat Simple_repeat 4 173 0 615 108 0 0 chr6 128311918 128312011 -60967543 + (TTCC)n Simple_repeat Simple_repeat 2 94 0 2118 129 10 0 chr6 128312030 128312339 -60967215 - AluSx SINE Alu 0 312 1 2523 82 0 0 chr6 128312881 128313186 -60966368 + AluSg SINE Alu 1 305 -5 369 0 0 0 chr6 128314512 128314553 -60965001 + (TG)n Simple_repeat Simple_repeat 2 42 0 1668 172 13 30 chr6 128314597 128314899 -60964655 - AluJo SINE Alu -15 297 1 1200 163 120 0 chr6 128316625 128316883 -60962671 - Tigger3(Golem) DNA MER2_type -1 3028 2740 873 153 0 0 chr6 128316883 128317020 -60962534 + FLAM_C SINE Alu 1 137 -6 1032 159 121 19 chr6 128317023 128317280 -60962274 - Tigger3(Golem) DNA MER2_type -265 2764 2482 1063 138 11 58 chr6 128317419 128317608 -60961946 + AluSq SINE Alu 126 305 -8 230 49 0 49 chr6 128317620 128317661 -60961893 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 2436 99 0 3 chr6 128317713 128318025 -60961529 + AluY SINE Alu 1 311 0 229 246 0 0 chr6 128318691 128318748 -60960806 + C-rich Low_complexity Low_complexity 1 57 0 1451 118 0 24 chr6 128318848 128319079 -60960475 + AluSq SINE Alu 90 313 0 1594 203 3 7 chr6 128319463 128319758 -60959796 - AluJo SINE Alu -18 294 1 237 65 0 0 chr6 128319797 128319828 -60959726 + (CATA)n Simple_repeat Simple_repeat 1 31 0 1656 168 160 43 chr6 128319983 128320322 -60959232 - MLT1C LTR MaLR 0 467 68 2387 99 3 0 chr6 128320322 128320624 -60958930 - AluSp SINE Alu -10 303 1 1656 168 160 43 chr6 128320624 128320702 -60958852 - MLT1C LTR MaLR -399 68 1 1817 177 18 0 chr6 128320704 128321032 -60958522 - MLT1A1 LTR MaLR 0 365 32 246 139 23 0 chr6 128321056 128321099 -60958455 - MLT1A1 LTR MaLR -318 56 13 284 261 91 0 chr6 128321715 128321803 -60957751 - MIR3 SINE MIR -3 205 110 22 35 0 0 chr6 128322191 128322220 -60957334 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr6 128322299 128322325 -60957229 + AT_rich Low_complexity Low_complexity 1 26 0 2124 115 0 16 chr6 128322852 128323156 -60956398 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr6 128323206 128323237 -60956317 + AT_rich Low_complexity Low_complexity 1 31 0 1785 150 3 66 chr6 128324928 128325261 -60954293 - AluJb SINE Alu 0 312 1 1174 267 159 35 chr6 128326053 128326783 -60952771 + L2 LINE L2 2446 3261 -52 2488 92 21 32 chr6 128326783 128327162 -60952392 - THE1C LTR MaLR 0 375 1 1174 267 159 35 chr6 128327162 128327182 -60952372 + L2 LINE L2 3261 3277 -36 580 240 14 14 chr6 128327189 128327335 -60952219 + MLT2F LTR ERVL 1 146 -517 * 637 204 24 82 chr6 128327334 128327540 -60952014 + MLT1E3 LTR MaLR 46 239 -385 288 167 83 111 chr6 128327845 128327880 -60951674 + L1ME4a LINE L1 5956 5990 -131 1648 232 17 90 chr6 128327880 128328323 -60951231 - MLT1F LTR MaLR -2 540 66 1486 172 81 0 chr6 128328323 128328596 -60950958 - AluJb SINE Alu -17 295 1 1648 232 17 90 chr6 128328596 128328607 -60950947 - MLT1F LTR MaLR -476 66 56 1871 171 0 16 chr6 128328607 128328923 -60950631 - AluJo SINE Alu -1 311 1 1648 232 17 90 chr6 128328923 128329045 -60950509 - MLT1F LTR MaLR -486 56 5 288 167 83 111 chr6 128329045 128329153 -60950401 + L1ME4a LINE L1 5990 6095 -26 350 78 62 0 chr6 128329173 128329237 -60950317 + T-rich Low_complexity Low_complexity 2 180 0 2035 155 0 13 chr6 128329237 128329543 -60950011 - AluJb SINE Alu 0 366 1 1454 192 44 19 chr6 128330198 128330558 -60948996 + MLT1B LTR MaLR 22 390 0 388 189 156 71 chr6 128330649 128330861 -60948693 - L1ME4a LINE L1 -39 6082 5853 301 225 28 28 chr6 128330894 128330979 -60948575 + (TAGA)n Simple_repeat Simple_repeat 3 90 -54 1426 175 74 60 chr6 128330979 128331345 -60948209 + MLT1A2 LTR MaLR 2 372 -2 301 225 28 28 chr6 128331345 128331401 -60948153 + (TAGA)n Simple_repeat Simple_repeat 89 144 0 * 350 283 11 38 chr6 128331362 128331546 -60948008 + (TA)n Simple_repeat Simple_repeat 2 180 0 246 272 35 18 chr6 128331493 128331607 -60947947 + (CATATA)n Simple_repeat Simple_repeat 3 118 0 * 232 289 88 61 chr6 128331699 128331813 -60947741 + MIR SINE MIR 23 139 -69 1113 203 52 11 chr6 128332503 128332774 -60946780 - MER63 DNA MER1_type -7 1055 774 950 289 108 21 chr6 128333078 128333707 -60945847 + L1MC4 LINE L1 7086 7769 -273 502 150 75 61 chr6 128333782 128333929 -60945625 + L1MC4 LINE L1 7894 8042 0 2146 139 3 0 chr6 128333936 128334245 -60945309 + AluSq SINE Alu 3 312 -1 696 81 37 22 chr6 128334283 128334419 -60945135 + GA-rich Low_complexity Low_complexity 2 139 0 376 243 19 0 chr6 128334753 128334856 -60944698 - L1ME2 LINE L1 -20 6144 6040 1052 244 36 14 chr6 128334862 128335223 -60944331 - L1M4 LINE L1 -868 5278 4910 1633 141 10 64 chr6 128335266 128335589 -60943965 - AluJb SINE Alu 0 307 1 791 152 6 70 chr6 128335641 128335812 -60943742 + MER8 DNA MER2_type 1 160 -79 421 90 0 0 chr6 128335822 128335889 -60943665 - MER41B LTR ERV1 -88 547 481 * 534 181 0 0 chr6 128335888 128335982 -60943572 + MER8 DNA MER2_type 146 239 0 311 254 57 16 chr6 128335990 128336112 -60943442 + L1ME4a LINE L1 5991 6117 -4 2048 135 3 0 chr6 128338236 128338547 -60941007 - AluSq SINE Alu 0 312 1 1143 235 169 18 chr6 128338649 128339088 -60940466 + MLT1D LTR MaLR 1 505 0 180 0 0 0 chr6 128339101 128339121 -60940433 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 237 341 124 46 chr6 128339155 128339478 -60940076 - L2 LINE L2 0 3272 2925 266 360 7 40 chr6 128339572 128339722 -60939832 - L2 LINE L2 -484 2830 2686 242 286 118 59 chr6 128339765 128340069 -60939485 - L2 LINE L2 -1125 2189 1868 571 196 171 0 chr6 128340141 128340299 -60939255 + MER5A DNA MER1_type 1 185 -4 465 234 284 0 chr6 128340328 128340469 -60939085 + MER5A DNA MER1_type 9 189 0 230 143 0 0 chr6 128340913 128340962 -60938592 + L1ME3 LINE L1 6114 6162 0 607 250 83 18 chr6 128341004 128341172 -60938382 + MER5A DNA MER1_type 1 179 -10 26 0 0 0 chr6 128341774 128341800 -60937754 + AT_rich Low_complexity Low_complexity 1 26 0 575 65 13 0 chr6 128341926 128342003 -60937551 - MADE1 DNA Mariner -2 78 1 1863 167 3 0 chr6 128342021 128342314 -60937240 - AluSx SINE Alu -18 294 1 777 295 0 15 chr6 128342314 128342514 -60937040 - MIR SINE MIR -64 198 2 366 291 29 86 chr6 128342663 128342838 -60936716 + MIR3 SINE MIR 33 197 -11 1899 192 50 46 chr6 128343087 128343587 -60935967 - MLT1D LTR MaLR -1 504 3 1786 148 20 10 chr6 128343771 128344075 -60935479 - AluSx SINE Alu -5 307 1 2213 96 3 0 chr6 128344079 128344392 -60935162 - AluSp SINE Alu 0 314 1 371 222 0 56 chr6 128344412 128344502 -60935052 - MIR3 SINE MIR -15 193 109 235 292 0 0 chr6 128345304 128345393 -60934161 + L1M4 LINE L1 3860 3948 -2198 1123 148 0 0 chr6 128345527 128345703 -60933851 - AluSg/x SINE Alu -3 309 134 615 236 89 94 chr6 128345705 128346004 -60933550 + HAL1 LINE L1 779 1075 -1432 2135 118 0 28 chr6 128346004 128346325 -60933229 + AluSx SINE Alu 1 312 0 615 236 89 94 chr6 128346325 128346589 -60932965 + HAL1 LINE L1 1075 1339 -1168 239 211 180 39 chr6 128346623 128346751 -60932803 + HAL1 LINE L1 1445 1590 -917 624 124 0 38 chr6 128346754 128346859 -60932695 - AluJo/FRAM SINE Alu -10 302 202 2770 19 0 0 chr6 128346860 128347169 -60932385 + AluYa5 SINE Alu 2 310 -1 237 246 0 0 chr6 128347178 128347243 -60932311 + L1M1 LINE L1 5378 5442 -860 2116 112 3 0 chr6 128347277 128347564 -60931990 + AluSx SINE Alu 1 288 -24 1309 291 79 19 chr6 128347620 128348289 -60931265 + L1ME3 LINE L1 5454 6162 0 2033 137 0 0 chr6 128348373 128348698 -60930856 - AluSx SINE Alu 0 325 1 1038 265 59 51 chr6 128348721 128349374 -60930180 + L1ME3A LINE L1 5283 5949 -221 1025 169 0 26 chr6 128349496 128349685 -60929869 + AluJb SINE Alu 129 312 0 21 82 0 0 chr6 128350834 128350883 -60928671 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr6 128351508 128351533 -60928021 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr6 128352072 128352112 -60927442 + AT_rich Low_complexity Low_complexity 1 40 0 249 276 69 0 chr6 128352163 128352250 -60927304 - L2 LINE L2 0 3313 3221 237 308 0 0 chr6 128352457 128352522 -60927032 - MIR SINE MIR -2 260 196 606 170 0 0 chr6 128352527 128352633 -60926921 - MER47A DNA MER2_type -6 360 255 2646 163 4 19 chr6 128352735 128353220 -60926334 + MER52A LTR ERV1 1278 1755 0 461 339 27 5 chr6 128353220 128353406 -60926148 - MIR SINE MIR -59 203 14 868 165 6 18 chr6 128353943 128354107 -60925447 - MER47A DNA MER2_type -201 165 4 682 233 5 93 chr6 128354109 128354324 -60925230 - MIR SINE MIR -63 199 4 1525 111 13 34 chr6 128354651 128354886 -60924668 + MER30 DNA MER1_type 1 230 0 1942 137 7 3 chr6 128355173 128355466 -60924088 + AluSx SINE Alu 1 294 -18 846 145 0 41 chr6 128355575 128355720 -60923834 + FLAM_C SINE Alu 1 139 -4 2283 110 0 7 chr6 128355935 128356243 -60923311 + AluSc SINE Alu 1 306 -3 2056 121 7 0 chr6 128357858 128358147 -60921407 - AluSx SINE Alu -21 291 1 293 260 55 0 chr6 128358149 128358222 -60921332 - MIR3 SINE MIR -29 179 103 21 0 0 0 chr6 128359047 128359068 -60920486 + AT_rich Low_complexity Low_complexity 1 21 0 1835 168 3 10 chr6 128359435 128359732 -60919822 - AluJo SINE Alu -5 307 13 231 349 91 56 chr6 128359747 128360232 -60919322 + L2 LINE L2 2238 2739 -575 2131 141 27 14 chr6 128360426 128360796 -60918758 - THE1C LTR MaLR 0 375 1 196 287 57 49 chr6 128361747 128361869 -60917685 - MIR SINE MIR -72 190 68 27 0 0 0 chr6 128362782 128362809 -60916745 + AT_rich Low_complexity Low_complexity 1 27 0 234 232 0 18 chr6 128363340 128363396 -60916158 + (TA)n Simple_repeat Simple_repeat 1 55 0 21 0 0 0 chr6 128363790 128363811 -60915743 + AT_rich Low_complexity Low_complexity 1 21 0 236 319 78 48 chr6 128363814 128363980 -60915574 + MIR3 SINE MIR 6 176 -32 842 101 48 125 chr6 128363985 128364153 -60915401 + BC200 scRNA scRNA 2 156 -44 190 282 87 29 chr6 128364166 128364269 -60915285 - MIR SINE MIR 0 262 154 1174 118 8 118 chr6 128364269 128364531 -60915023 + LTR12 LTR ERV1 2 234 -480 327 121 0 0 chr6 128364592 128364650 -60914904 + LTR12 LTR ERV1 232 289 -425 260 230 35 23 chr6 128364650 128364737 -60914817 + LTR30 LTR ERV1 556 643 -79 664 101 10 0 chr6 128364739 128364838 -60914716 + LTR12 LTR ERV1 615 714 0 393 327 56 10 chr6 128364839 128364983 -60914571 - MIR SINE MIR -65 143 8 2251 104 0 0 chr6 128365650 128365939 -60913615 + AluSx SINE Alu 10 298 -14 306 233 54 16 chr6 128365942 128366071 -60913483 + L1ME4a LINE L1 5986 6119 -2 466 188 10 10 chr6 128366776 128366872 -60912682 + MER58 DNA MER1_type 149 244 -2176 997 159 116 9 chr6 128366927 128367160 -60912394 + MLT1C LTR MaLR 53 310 -157 1181 185 5 22 chr6 128367160 128367382 -60912172 + AluJo SINE Alu 83 300 -12 438 178 11 11 chr6 128367406 128367496 -60912058 + MLT1C LTR MaLR 378 467 0 1533 182 3 34 chr6 128367737 128367875 -60911679 + AluJb SINE Alu 1 142 -169 297 75 0 0 chr6 128367875 128367915 -60911639 + (CA)n Simple_repeat Simple_repeat 1 40 0 1533 182 3 34 chr6 128367915 128368096 -60911458 + AluJb SINE Alu 142 311 0 28 48 0 0 chr6 128368572 128368614 -60910940 + AT_rich Low_complexity Low_complexity 1 42 0 1955 143 0 20 chr6 128368636 128368937 -60910617 - AluSx SINE Alu -17 295 1 27 0 0 0 chr6 128369733 128369760 -60909794 + AT_rich Low_complexity Low_complexity 1 27 0 1962 156 0 0 chr6 128371229 128371554 -60908000 + AluSx SINE Alu 1 312 0 306 267 67 13 chr6 128371612 128371687 -60907867 + MIR SINE MIR 38 116 -92 321 277 59 15 chr6 128372397 128372599 -60906955 + L1ME4a LINE L1 4626 4836 -1310 2044 130 0 3 chr6 128372721 128373035 -60906519 - AluSx SINE Alu 0 313 1 1702 137 58 4 chr6 128373111 128373388 -60906166 - AluSx SINE Alu -20 292 1 364 266 92 60 chr6 128373433 128373452 -60906102 + L1ME4a LINE L1 5043 5060 -1086 463 103 184 11 chr6 128373452 128373539 -60906015 + U13 snRNA snRNA 2 103 -1 364 266 92 60 chr6 128373539 128373801 -60905753 + L1ME4a LINE L1 5060 5333 -813 543 286 88 39 chr6 128373899 128374287 -60905267 + L1ME4a LINE L1 5482 5888 -233 391 286 93 43 chr6 128375365 128375526 -60904028 - MIR SINE MIR -77 185 17 1868 150 39 0 chr6 128375848 128376155 -60903399 - AluSx SINE Alu 0 312 1 1849 114 24 57 chr6 128376843 128377140 -60902414 + AluSx SINE Alu 9 295 -17 265 336 0 29 chr6 128377247 128377351 -60902203 - MIR SINE MIR -113 149 49 236 248 120 68 chr6 128377533 128377650 -60901904 - MARNA DNA Mariner -305 281 159 201 74 0 0 chr6 128377799 128377826 -60901728 + (TA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr6 128378210 128378231 -60901323 + AT_rich Low_complexity Low_complexity 1 21 0 205 98 49 0 chr6 128378923 128378964 -60900590 + GA-rich Low_complexity Low_complexity 3 45 0 182 406 0 0 chr6 128379138 128379239 -60900315 - L2 LINE L2 -1018 2296 2196 706 205 86 0 chr6 128379302 128379453 -60900101 + FAM SINE Alu 4 167 -8 2192 110 0 0 chr6 128379604 128379896 -60899658 - AluSg SINE Alu -18 292 1 21 0 0 0 chr6 128379985 128380006 -60899548 + AT_rich Low_complexity Low_complexity 1 21 0 418 318 52 60 chr6 128380673 128380925 -60898629 + MIR SINE MIR 2 251 -11 1500 167 123 22 chr6 128381730 128381999 -60897555 + AluJo SINE Alu 1 296 -16 672 224 0 0 chr6 128382001 128382166 -60897388 + (TATATG)n Simple_repeat Simple_repeat 4 168 0 833 144 0 0 chr6 128382476 128382594 -60896960 + FLAM_C SINE Alu 1 118 -15 21 0 0 0 chr6 128382594 128382615 -60896939 + AT_rich Low_complexity Low_complexity 1 21 0 232 202 137 73 chr6 128382733 128382857 -60896697 + MIR SINE MIR 106 237 -25 536 317 165 22 chr6 128383038 128383492 -60896062 + L2 LINE L2 1176 1694 -1620 1506 95 4 4 chr6 128383529 128383761 -60895793 - Tigger4(Zombi) DNA MER2_type -2 2729 2498 1384 174 46 4 chr6 128383799 128384058 -60895496 - Tigger4(Zombi) DNA MER2_type -2461 270 1 1022 311 94 32 chr6 128384064 128384818 -60894736 + L2 LINE L2 1729 3070 -202 630 264 75 93 chr6 128384980 128385314 -60894240 + L2 LINE L2 2981 3308 -5 336 271 17 25 chr6 128385603 128385721 -60893833 + L2 LINE L2 3195 3311 -2 181 261 185 46 chr6 128385758 128385888 -60893666 + MIR3 SINE MIR 2 149 -59 247 299 51 26 chr6 128385922 128386039 -60893515 + L2 LINE L2 3187 3306 -7 196 73 0 49 chr6 128386816 128386857 -60892697 + (CCCCG)n Simple_repeat Simple_repeat 1 39 0 240 264 23 11 chr6 128386904 128386991 -60892563 + C-rich Low_complexity Low_complexity 4 91 0 207 162 0 0 chr6 128389347 128389384 -60890170 + (CTG)n Simple_repeat Simple_repeat 2 38 0 337 255 110 86 chr6 128390635 128390890 -60888664 - L1M2 LINE L1 -5822 1027 767 23 68 0 0 chr6 128391508 128391552 -60888002 + GC_rich Low_complexity Low_complexity 1 44 0 231 298 8 0 chr6 128391866 128391987 -60887567 + (CGG)n Simple_repeat Simple_repeat 2 123 0 34 65 0 0 chr6 128392108 128392170 -60887384 + GC_rich Low_complexity Low_complexity 1 62 0 214 205 26 0 chr6 128394685 128394724 -60884830 + L2 LINE L2 3213 3252 -20 23 86 0 0 chr6 128395205 128395263 -60884291 + AT_rich Low_complexity Low_complexity 1 58 0 201 94 0 0 chr6 128395504 128395536 -60884018 + (TA)n Simple_repeat Simple_repeat 2 33 0 755 133 9 9 chr6 128395540 128395653 -60883901 - FLAM_C SINE Alu -24 119 7 273 286 117 0 chr6 128396275 128396429 -60883125 + MARNA DNA Mariner 203 374 -212 1643 131 97 0 chr6 128396765 128397032 -60882522 - AluSx SINE Alu -14 298 6 1580 166 81 18 chr6 128398144 128398427 -60881127 - AluJb SINE Alu -4 308 8 1174 163 100 6 chr6 128398810 128399115 -60880439 - MER33 DNA MER1_type -1 323 1 861 181 32 16 chr6 128399297 128399485 -60880069 + MLT1B LTR MaLR 1 191 -199 1118 242 75 60 chr6 128399539 128399772 -60879782 - L1MC5 LINE L1 -175 7786 7558 2695 157 77 0 chr6 128399772 128400250 -60879304 + MLT2B2 LTR ERVL 1 515 0 1118 242 75 60 chr6 128400250 128400672 -60878882 - L1MC5 LINE L1 -403 7558 7121 310 120 20 0 chr6 128400679 128400729 -60878825 - MER66A LTR ERV1 -141 337 287 926 135 0 0 chr6 128400752 128400885 -60878669 - FLAM_C SINE Alu 0 133 1 557 160 68 108 chr6 128400893 128401048 -60878506 - L1MC5 LINE L1 -834 7127 6984 1898 113 110 27 chr6 128401048 128401384 -60878170 + THE1B LTR MaLR 1 364 0 557 160 68 108 chr6 128401384 128401478 -60878076 - L1MC5 LINE L1 -977 6984 6888 2039 125 0 26 chr6 128402882 128403185 -60876369 - AluSx SINE Alu -17 295 1 287 24 0 24 chr6 128403396 128403437 -60876117 + (TA)n Simple_repeat Simple_repeat 2 41 0 187 337 0 48 chr6 128404130 128404213 -60875341 - L2 LINE L2 -1 3312 3234 32 0 0 0 chr6 128404465 128404497 -60875057 + AT_rich Low_complexity Low_complexity 1 32 0 888 232 74 108 chr6 128404531 128404604 -60874950 - MLT1G LTR MaLR 0 590 516 530 189 55 0 chr6 128404604 128404731 -60874823 - L1MA10 LINE L1 -2 6332 6199 888 232 74 108 chr6 128404731 128405268 -60874286 - MLT1G LTR MaLR -74 516 1 205 22 89 22 chr6 128405534 128405579 -60873975 + (TTATA)n Simple_repeat Simple_repeat 3 50 0 2031 131 32 0 chr6 128405752 128406035 -60873519 + AluSc SINE Alu 1 292 -17 27 0 0 0 chr6 128406989 128407016 -60872538 + AT_rich Low_complexity Low_complexity 1 27 0 358 375 56 0 chr6 128407437 128407581 -60871973 - L2 LINE L2 -16 3256 3105 320 297 9 0 chr6 128407707 128407818 -60871736 + L1MC/D LINE L1 5132 5243 -903 1006 298 49 9 chr6 128407895 128408344 -60871210 + L1MC/D LINE L1 5338 5804 -2004 1067 265 80 62 chr6 128408344 128408858 -60870696 - MLT1G1 LTR MaLR 0 595 73 267 259 0 0 chr6 128408880 128408961 -60870593 + L1MC/D LINE L1 5797 5877 -1931 2280 119 0 0 chr6 128409480 128409782 -60869772 - AluSx SINE Alu -2 310 9 21 0 0 0 chr6 128411258 128411279 -60868275 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 128411650 128411684 -60867870 + AT_rich Low_complexity Low_complexity 1 34 0 2417 112 18 5 chr6 128411895 128412280 -60867274 - L1PA13 LINE L1 -2 6161 5772 186 71 0 0 chr6 128412397 128412425 -60867129 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 1527 204 6 19 chr6 128412432 128412745 -60866809 - AluJb SINE Alu -3 309 1 688 171 30 61 chr6 128412968 128413132 -60866422 + MIR SINE MIR 85 243 -19 2267 125 15 77 chr6 128414363 128414843 -60864711 + L1MA5 LINE L1 5851 6300 0 204 238 60 60 chr6 128415210 128415294 -60864260 - L2 LINE L2 -1522 1792 1709 213 220 85 0 chr6 128416581 128416640 -60862914 - MIR SINE MIR -131 131 68 334 291 18 18 chr6 128416813 128416923 -60862631 + GA-rich Low_complexity Low_complexity 3 112 0 1947 154 0 7 chr6 128417448 128417740 -60861814 - AluSx SINE Alu -21 291 2 481 282 143 12 chr6 128417786 128418031 -60861523 + L2 LINE L2 3033 3309 -4 335 258 124 0 chr6 128418152 128418249 -60861305 - MIR SINE MIR -148 114 6 363 23 0 0 chr6 128418263 128418307 -60861247 + (TG)n Simple_repeat Simple_repeat 1 44 0 2248 100 0 19 chr6 128418692 128419003 -60860551 - AluSc SINE Alu -4 305 1 2354 83 3 22 chr6 128419587 128419900 -60859654 - AluY SINE Alu -4 307 1 324 298 158 11 chr6 128420217 128420408 -60859146 + MIR SINE MIR 36 254 -8 33 0 0 0 chr6 128420568 128420601 -60858953 + AT_rich Low_complexity Low_complexity 1 33 0 226 322 33 11 chr6 128420939 128421029 -60858525 - MIR SINE MIR -169 93 2 288 0 0 0 chr6 128421762 128421794 -60857760 + (CA)n Simple_repeat Simple_repeat 2 33 0 1031 114 0 0 chr6 128422417 128422557 -60856997 + AluJo SINE Alu 1 140 -172 581 134 27 45 chr6 128422559 128422671 -60856883 + AluSp/q SINE Alu 187 296 -17 336 312 116 23 chr6 128422677 128422829 -60856725 + L1MC4a LINE L1 5666 5845 -1963 1627 155 61 27 chr6 128422829 128423126 -60856428 + AluJo SINE Alu 1 307 -5 336 312 116 23 chr6 128423126 128423188 -60856366 + L1MC4a LINE L1 5845 5900 -1908 12547 126 28 31 chr6 128423233 128423845 -60855709 + Tigger1 DNA MER2_type 26 638 -1780 1905 125 9 84 chr6 128423845 128424180 -60855374 + AluSx SINE Alu 1 310 -2 12547 126 28 31 chr6 128424180 128425775 -60853779 + Tigger1 DNA MER2_type 638 2226 -192 211 317 40 70 chr6 128426134 128426333 -60853221 + L2 LINE L2 2909 3101 -171 376 275 55 45 chr6 128426389 128426445 -60853109 - LTR16C LTR ERVL -2 489 435 1051 205 193 26 chr6 128426445 128426870 -60852684 + LTR54B LTR ERV1 1 496 -2 376 275 55 45 chr6 128426870 128427013 -60852541 - LTR16C LTR ERVL -56 435 288 281 297 72 0 chr6 128428333 128428444 -60851110 + MIR SINE MIR 47 165 -97 314 80 20 0 chr6 128429348 128429398 -60850156 + (GA)n Simple_repeat Simple_repeat 2 52 0 192 77 0 0 chr6 128429513 128429539 -60850015 + (T)n Simple_repeat Simple_repeat 1 26 0 2593 58 0 0 chr6 128429539 128429865 -60849689 - LTR17 LTR ERV1 -454 326 1 1927 45 20 0 chr6 128429865 128430112 -60849442 - HERV17 LTR ERV1 0 8626 8375 840 138 14 28 chr6 128430158 128430303 -60849251 - FLAM_C SINE Alu 0 143 1 324 319 104 7 chr6 128430606 128430750 -60848804 - MIR3 SINE MIR -13 195 38 21 104 0 0 chr6 128430804 128430881 -60848673 + AT_rich Low_complexity Low_complexity 1 77 0 399 240 74 8 chr6 128431059 128431180 -60848374 + MLT2F LTR ERVL 18 146 -517 708 226 0 70 chr6 128431188 128431387 -60848167 + MLT1E3 LTR MaLR 55 239 -385 456 234 85 110 chr6 128431198 128431561 -60847993 + MLT2C1 LTR ERVL 44 397 0 * 1629 193 7 3 chr6 128432671 128433003 -60846551 - AluJb SINE Alu 0 312 1 844 263 90 52 chr6 128435007 128435354 -60844200 - L1MC5 LINE L1 -924 6884 6591 378 0 0 0 chr6 128435354 128435396 -60844158 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 844 263 90 52 chr6 128435396 128435582 -60843972 - L1MC5 LINE L1 -1217 6591 6414 228 35 0 0 chr6 128435634 128435663 -60843891 + (TG)n Simple_repeat Simple_repeat 2 30 0 658 275 92 8 chr6 128435842 128436082 -60843472 - L1MC5 LINE L1 -1937 5871 5612 189 0 0 0 chr6 128437986 128438007 -60841547 + (TC)n Simple_repeat Simple_repeat 2 22 0 639 207 0 0 chr6 128438008 128438124 -60841430 - FLAM_A SINE Alu -17 116 1 232 245 0 0 chr6 128439452 128439505 -60840049 - MLT1G LTR MaLR 0 595 543 1440 161 0 58 chr6 128439505 128439779 -60839775 + AluJo SINE Alu 35 292 -20 364 204 18 38 chr6 128439789 128439898 -60839656 - MLT1G LTR MaLR -27 540 415 1204 268 10 17 chr6 128439901 128440192 -60839362 - MLT1G LTR MaLR -286 304 16 555 228 56 145 chr6 128440342 128440905 -60838649 + MLT1G LTR MaLR 4 538 -17 2221 52 0 81 chr6 128441225 128441571 -60837983 + AluY SINE Alu 1 321 0 191 324 68 97 chr6 128441577 128441886 -60837668 - L2 LINE L2 -494 2820 2521 1457 189 7 32 chr6 128442629 128442910 -60836644 + AluJo SINE Alu 13 286 -26 4342 82 0 12 chr6 128443044 128443640 -60835914 - THE1A-int LTR MaLR -991 589 1 2332 111 17 3 chr6 128443640 128443990 -60835564 - THE1A LTR MaLR 0 355 1 222 277 0 0 chr6 128444044 128444091 -60835463 + L2 LINE L2 3256 3302 -11 2563 128 21 39 chr6 128444224 128444424 -60835130 + MSTA LTR MaLR 1 203 -225 2429 57 14 0 chr6 128444424 128444721 -60834833 + AluY SINE Alu 1 301 -10 2563 128 21 39 chr6 128444721 128444956 -60834598 + MSTA LTR MaLR 203 428 0 216 307 57 11 chr6 128445249 128445337 -60834217 - L2 LINE L2 -12 3260 3169 27 49 0 0 chr6 128445536 128445577 -60833977 + AT_rich Low_complexity Low_complexity 1 41 0 245 246 99 14 chr6 128445805 128445947 -60833607 - L1MC/D LINE L1 -2523 5708 5555 311 273 39 23 chr6 128445949 128446077 -60833477 - L1MC/D LINE L1 -852 5530 5401 609 315 55 27 chr6 128446079 128446499 -60833055 - L1MC/D LINE L1 -4732 1650 1267 1843 152 55 36 chr6 128446519 128446882 -60832672 - THE1C LTR MaLR 0 375 6 3459 244 42 60 chr6 128446884 128447943 -60831611 - L1MC/D LINE L1 -5158 1405 369 1848 176 7 81 chr6 128447943 128448364 -60831190 - MLT1B LTR MaLR 0 390 1 3459 244 42 60 chr6 128448364 128448530 -60831024 - L1MC/D LINE L1 -6194 369 202 678 296 30 27 chr6 128448573 128448901 -60830653 - L1M4 LINE L1 -1062 5084 4756 1169 240 64 31 chr6 128448994 128449353 -60830201 - MLT1C LTR MaLR 0 467 97 2728 226 128 5 chr6 128449360 128450096 -60829458 - L1ME1 LINE L1 -80 6086 5261 392 152 40 7 chr6 128450140 128450444 -60829110 + (TA)n Simple_repeat Simple_repeat 1 314 0 431 196 80 29 chr6 128450456 128450594 -60828960 - L1ME1 LINE L1 -861 5285 5141 304 264 79 7 chr6 128450683 128450823 -60828731 - MIR SINE MIR 0 262 113 318 303 56 11 chr6 128450918 128451007 -60828547 - MIR SINE MIR -156 106 14 22 35 0 0 chr6 128451212 128451241 -60828313 + AT_rich Low_complexity Low_complexity 1 29 0 1772 165 41 0 chr6 128451384 128451675 -60827879 + AluJb SINE Alu 1 303 -9 433 296 91 23 chr6 128452968 128453144 -60826410 + MIR SINE MIR 46 233 -29 213 217 22 0 chr6 128453175 128453221 -60826333 + (TTG)n Simple_repeat Simple_repeat 3 49 0 300 251 108 92 chr6 128454729 128455119 -60824435 + L1ME4a LINE L1 5725 6120 -1 2308 148 21 8 chr6 128455342 128455719 -60823835 + MLT1B LTR MaLR 3 384 -6 723 280 83 57 chr6 128455732 128456082 -60823472 - MLT1H LTR MaLR -152 397 39 266 196 59 0 chr6 128456436 128456487 -60823067 + L2 LINE L2 3209 3262 -10 468 360 71 0 chr6 128457997 128458183 -60821371 + MIR SINE MIR 20 224 -38 1590 226 28 19 chr6 128458183 128458545 -60821009 - MLT1A1 LTR MaLR 0 365 1 468 360 71 0 chr6 128458545 128458569 -60820985 + MIR SINE MIR 224 245 -17 261 346 107 63 chr6 128458585 128458949 -60820605 - L2 LINE L2 -759 2555 2176 323 290 40 0 chr6 128459108 128459232 -60820322 + L1MC4a LINE L1 5721 5849 -1959 247 303 52 7 chr6 128459706 128459861 -60819693 - MER103 DNA DNA -1 165 4 29 0 0 0 chr6 128460732 128460761 -60818793 + AT_rich Low_complexity Low_complexity 1 29 0 5978 157 12 10 chr6 128460873 128462134 -60817420 - L1MA4 LINE L1 -30 6270 5011 962 132 0 0 chr6 128462144 128462280 -60817274 - AluSp/q SINE Alu -15 298 163 1154 94 6 6 chr6 128462284 128462444 -60817110 + MLT2A1 LTR ERVL 210 369 -75 5738 142 19 43 chr6 128462447 128463129 -60816425 - L1M1 LINE L1 -4065 1263 566 1714 125 97 31 chr6 128463129 128463480 -60816074 - THE1C LTR MaLR 0 375 2 975 122 17 0 chr6 128463488 128463660 -60815894 + CT-rich Low_complexity Low_complexity 2 176 0 5738 142 19 43 chr6 128463660 128464050 -60815504 - L1M1 LINE L1 -4769 559 309 1691 193 3 3 chr6 128464161 128464462 -60815092 - L1M1 LINE L1 -5014 314 14 5593 97 22 5 chr6 128464529 128465767 -60813787 + SVA Other Other 6 1380 -6 261 0 0 0 chr6 128465777 128465806 -60813748 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 856 201 40 0 chr6 128466142 128466316 -60813238 + L1MC4 LINE L1 7358 7538 -504 339 267 23 0 chr6 128466318 128466404 -60813150 - MIR SINE MIR -91 117 30 189 107 0 0 chr6 128466413 128466441 -60813113 + (CATCC)n Simple_repeat Simple_repeat 2 29 0 206 103 0 26 chr6 128466498 128466537 -60813017 + (CATTC)n Simple_repeat Simple_repeat 3 40 0 476 257 7 69 chr6 128466541 128466685 -60812869 - L2 LINE L2 -1 3271 3137 236 226 48 0 chr6 128466718 128466802 -60812752 - L1MC4 LINE L1 -1340 6702 6615 307 216 39 29 chr6 128466806 128466908 -60812646 + LTR41 LTR ERVL 659 761 -12 313 304 101 30 chr6 128467274 128467442 -60812112 - MIR3 SINE MIR -23 185 6 2125 130 7 0 chr6 128469674 128469974 -60809580 + AluSx SINE Alu 1 302 -10 565 137 65 24 chr6 128469990 128470114 -60809440 - MIR SINE MIR -48 214 86 1330 187 105 15 chr6 128470554 128470821 -60808733 + AluJo SINE Alu 1 291 -21 2235 96 7 3 chr6 128470830 128471131 -60808423 + AluSg SINE Alu 1 302 -8 232 259 102 19 chr6 128471933 128472041 -60807513 + L1ME LINE L1 5774 5890 -272 1066 103 0 12 chr6 128472257 128472422 -60807132 + L1PB1 LINE L1 5987 6149 -2 220 254 123 92 chr6 128473039 128473169 -60806385 + L2 LINE L2 3180 3313 0 36 53 0 0 chr6 128474769 128474826 -60804728 + AT_rich Low_complexity Low_complexity 1 57 0 198 319 86 43 chr6 128475521 128475637 -60803917 - L2 LINE L2 -15 3257 3137 211 279 0 0 chr6 128476319 128476380 -60803174 + CT-rich Low_complexity Low_complexity 3 63 0 1512 173 45 4 chr6 128477493 128477759 -60801795 - AluJo SINE Alu -35 277 1 337 271 34 25 chr6 128477759 128477877 -60801677 - MIR SINE MIR -98 164 46 697 163 7 34 chr6 128478027 128478174 -60801380 + FLAM_C SINE Alu 1 143 0 244 250 0 0 chr6 128478625 128478673 -60800881 + Tigger5 DNA MER2_type 1 48 -2275 1292 158 13 13 chr6 128478695 128478929 -60800625 + Tigger5 DNA MER2_type 2090 2323 0 21 57 0 0 chr6 128479225 128479260 -60800294 + AT_rich Low_complexity Low_complexity 1 35 0 564 317 22 4 chr6 128480154 128480384 -60799170 + HAL1 LINE L1 1 234 -2273 350 291 283 22 chr6 128481150 128481638 -60797916 + HAL1 LINE L1 1667 2281 -226 2096 110 13 7 chr6 128482749 128483050 -60796504 - AluSp SINE Alu -10 303 1 255 216 23 45 chr6 128483177 128483265 -60796289 + (TATATG)n Simple_repeat Simple_repeat 4 89 0 2013 117 6 54 chr6 128483345 128483662 -60795892 - AluSx SINE Alu -7 305 4 2411 51 7 0 chr6 128484440 128484736 -60794818 - AluY SINE Alu -13 298 1 425 156 31 52 chr6 128485045 128485177 -60794377 - MER5A DNA MER1_type 0 189 1 3937 212 99 15 chr6 128486747 128487825 -60791729 + Cheshire DNA MER1_type 2 1170 -1250 2227 96 7 0 chr6 128488189 128488482 -60791072 - AluSg SINE Alu -15 295 1 1671 179 25 0 chr6 128488498 128488783 -60790771 - AluJb SINE Alu -20 292 1 2139 103 3 23 chr6 128490459 128490761 -60788793 - AluSx SINE Alu -16 296 1 1498 187 20 10 chr6 128493787 128494087 -60785467 - MER2 DNA MER2_type -25 320 18 750 259 69 26 chr6 128495074 128495306 -60784248 - MIR SINE MIR -3 259 18 23 33 0 0 chr6 128495380 128495410 -60784144 + AT_rich Low_complexity Low_complexity 1 30 0 2141 96 0 10 chr6 128495654 128495947 -60783607 + AluSc SINE Alu 1 290 -19 2114 137 0 0 chr6 128496129 128496429 -60783125 - AluSq SINE Alu -13 300 1 386 259 68 27 chr6 128496541 128496688 -60782866 - MER46A DNA MER2_type -76 160 8 * 1019 186 51 0 chr6 128496562 128496777 -60782777 + MER46A DNA MER2_type 11 236 0 937 240 72 23 chr6 128496955 128497259 -60782295 - MER46C DNA MER2_type -1 337 19 217 247 49 25 chr6 128497425 128497506 -60782048 + L2 LINE L2 1990 2072 -1242 313 207 72 81 chr6 128497541 128497652 -60781902 - L2 LINE L2 -3 3310 3201 642 302 119 30 chr6 128497684 128498045 -60781509 + L2 LINE L2 2185 2577 -737 2274 85 0 35 chr6 128498400 128498716 -60780838 - AluSg SINE Alu -5 305 1 2239 95 0 20 chr6 128499313 128499617 -60779937 + AluSq SINE Alu 1 298 -15 2054 104 46 0 chr6 128500194 128500474 -60779080 - AluSq SINE Alu -20 293 1 216 314 14 14 chr6 128500799 128500869 -60778685 - MIR3 SINE MIR -7 201 132 219 148 37 19 chr6 128503366 128503420 -60776134 + G-rich Low_complexity Low_complexity 5 59 0 21 71 0 0 chr6 128503856 128503898 -60775656 + GC_rich Low_complexity Low_complexity 1 42 0 240 86 0 0 chr6 128503991 128504026 -60775528 + (CTG)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr6 128504696 128504716 -60774838 + (TTA)n Simple_repeat Simple_repeat 2 21 0 278 273 164 24 chr6 128504877 128505042 -60774512 - MIR SINE MIR -66 196 9 280 190 69 0 chr6 128505542 128505600 -60773954 + MIR SINE MIR 84 145 -117 24 0 0 0 chr6 128505807 128505831 -60773723 + AT_rich Low_complexity Low_complexity 1 24 0 1605 114 3 138 chr6 128506896 128507237 -60772317 - AluYa8 SINE Alu -5 295 1 471 235 45 82 chr6 128507312 128507555 -60771999 + MLT1J LTR MaLR 278 511 0 1052 206 52 113 chr6 128507611 128508091 -60771463 + LTR40b LTR ERVL 3 453 -9 435 271 79 87 chr6 128508135 128508270 -60771284 + MER89-int LTR ERV1 6081 6215 -586 2263 107 3 3 chr6 128508270 128508579 -60770975 + AluSc SINE Alu 1 309 0 435 271 79 87 chr6 128508579 128508846 -60770708 + MER89-int LTR ERV1 6215 6480 -321 * 572 205 161 0 chr6 128508844 128509005 -60770549 + HERVL40 LTR ERVL 5305 5491 -39 1234 244 23 0 chr6 128509225 128509524 -60770030 + LTR40b LTR ERVL 157 462 0 891 202 139 19 chr6 128509539 128509747 -60769807 + MER8 DNA MER2_type 7 239 0 272 79 0 0 chr6 128509949 128509987 -60769567 + MLT2C2 LTR ERVL 427 464 0 25 65 0 0 chr6 128510492 128510538 -60769016 + AT_rich Low_complexity Low_complexity 1 46 0 202 235 0 20 chr6 128510626 128510677 -60768877 + T-rich Low_complexity Low_complexity 1 50 0 440 337 11 23 chr6 128511013 128511188 -60768366 - MER5A DNA MER1_type 0 189 17 2135 122 3 0 chr6 128511388 128511713 -60767841 - AluSx SINE Alu 0 326 1 1328 128 0 0 chr6 128511915 128512095 -60767459 + AluSx SINE Alu 1 180 -132 1978 105 7 21 chr6 128513066 128513351 -60766203 - AluSg SINE Alu -9 301 21 2218 101 0 7 chr6 128514334 128514632 -60764922 - AluSx SINE Alu -16 296 1 24 0 0 0 chr6 128514634 128514658 -60764896 + AT_rich Low_complexity Low_complexity 1 24 0 292 231 91 83 chr6 128515013 128515134 -60764420 + MLT2F LTR ERVL 276 663 0 1517 216 7 3 chr6 128516249 128516268 -60763286 - AluJb SINE Alu -10 302 285 255 31 0 0 chr6 128516268 128516300 -60763254 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 1517 216 7 3 chr6 128516300 128516581 -60762973 - AluJb SINE Alu -27 285 1 474 259 7 28 chr6 128517599 128517742 -60761812 + MLT1K LTR MaLR 449 588 0 864 209 144 9 chr6 128518741 128519277 -60760277 - L1MC4 LINE L1 -5 8037 7272 825 231 97 11 chr6 128519277 128519546 -60760008 - MLT1G1 LTR MaLR -298 297 6 2232 111 0 3 chr6 128519876 128520173 -60759381 - AluSg SINE Alu -14 296 1 2894 217 26 61 chr6 128520561 128520844 -60758710 + L1ME1 LINE L1 5317 5608 -558 2186 103 10 7 chr6 128520844 128521144 -60758410 + AluSq SINE Alu 1 301 -12 689 214 0 0 chr6 128521152 128521269 -60758285 + FLAM_A SINE Alu 2 118 -15 2894 217 26 61 chr6 128521269 128521856 -60757698 + L1ME1 LINE L1 5615 6165 -1 2324 105 0 0 chr6 128521928 128522233 -60757321 - AluSg SINE Alu -5 305 1 2283 111 21 29 chr6 128523895 128524273 -60755281 + THE1C LTR MaLR 1 375 0 499 265 42 16 chr6 128524708 128524897 -60754657 - MLT1L LTR MaLR -4 611 418 734 236 34 11 chr6 128525764 128525942 -60753612 - MIR SINE MIR -62 200 19 2384 83 10 0 chr6 128526142 128526442 -60753112 - AluY SINE Alu -8 303 1 2092 149 16 25 chr6 128526586 128526954 -60752600 - MLT1A1 LTR MaLR 0 365 1 314 309 117 33 chr6 128527097 128527404 -60752150 - L2 LINE L2 -1063 2251 1919 1581 112 8 8 chr6 128527426 128527668 -60751886 - THE1B LTR MaLR -2 362 121 5851 93 9 0 chr6 128527668 128528624 -60750930 + L1P3 LINE L1 4501 5463 -691 445 233 19 10 chr6 128528633 128528736 -60750818 + L3 LINE CR1 913 1016 -561 1018 169 0 12 chr6 128528938 128529104 -60750450 - FRAM SINE Alu -9 167 4 782 186 104 0 chr6 128529528 128529711 -60749843 - MER3 DNA MER1_type -1 208 7 207 0 0 0 chr6 128529879 128529902 -60749652 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2140 123 0 0 chr6 128529904 128530196 -60749358 - AluSx SINE Alu -20 292 1 547 284 138 23 chr6 128530448 128530874 -60748680 + MLT1J2 LTR MaLR 3 448 -2 236 308 11 99 chr6 128530894 128531030 -60748524 + L2 LINE L2 335 453 -2861 2023 117 38 0 chr6 128531030 128531320 -60748234 - AluSx SINE Alu -11 301 1 236 308 11 99 chr6 128531320 128531365 -60748189 + L2 LINE L2 453 500 -2814 190 193 35 53 chr6 128532927 128532984 -60746570 + MIR SINE MIR 157 212 -50 2288 104 0 19 chr6 128585115 128585433 -60694121 - AluSx SINE Alu 0 312 1 21 0 0 0 chr6 128585954 128585975 -60693579 + AT_rich Low_complexity Low_complexity 1 21 0 1695 181 0 20 chr6 128586544 128586848 -60692706 - AluJb SINE Alu -14 298 1 2014 117 11 3 chr6 128586872 128587181 -60692373 + AluSq SINE Alu 1 311 0 35 0 0 0 chr6 128587629 128587664 -60691890 + AT_rich Low_complexity Low_complexity 1 35 0 2090 121 0 14 chr6 128587723 128588020 -60691534 + AluSx SINE Alu 1 293 -19 219 378 35 29 chr6 128588625 128588797 -60690757 - L2 LINE L2 -183 3089 2917 487 225 127 14 chr6 128588958 128589100 -60690454 + MIR SINE MIR 105 262 0 206 307 9 35 chr6 128589446 128589560 -60689994 + CT-rich Low_complexity Low_complexity 2 112 0 181 284 95 11 chr6 128589596 128589691 -60689863 + L2 LINE L2 3170 3272 0 1465 67 0 0 chr6 128589876 128590055 -60689499 + L1PA6 LINE L1 5795 5973 -181 1917 184 28 86 chr6 128590195 128590411 -60689143 - MER63B DNA MER1_type -626 436 260 2171 109 3 3 chr6 128590411 128590704 -60688850 - AluSg SINE Alu -17 293 1 1917 184 28 86 chr6 128590704 128590950 -60688604 - MER63B DNA MER1_type -802 260 1 183 286 0 0 chr6 128590978 128591027 -60688527 + MIR SINE MIR 193 241 -21 254 227 0 0 chr6 128591125 128591169 -60688385 - MIR SINE MIR -88 120 77 399 217 0 0 chr6 128591979 128592048 -60687506 + L1MC4 LINE L1 6820 6888 -1154 1648 225 22 8 chr6 128592107 128592467 -60687087 - MLT1A1 LTR MaLR 0 365 1 842 183 61 30 chr6 128592532 128592729 -60686825 + MER58A DNA MER1_type 22 224 0 339 297 159 0 chr6 128592730 128592868 -60686686 + L1 LINE L1 3596 3755 -2391 272 297 99 73 chr6 128592979 128593171 -60686383 - L2 LINE L2 -43 3229 3033 1194 136 5 61 chr6 128593267 128593432 -60686122 - AluJo SINE Alu -15 297 124 195 42 0 0 chr6 128593432 128593456 -60686098 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2181 92 4 0 chr6 128593456 128593737 -60685817 - AluSg SINE Alu -28 282 1 1194 136 5 61 chr6 128593737 128593783 -60685771 - AluJo SINE Alu -186 126 97 195 361 0 12 chr6 128593879 128593962 -60685592 + L2 LINE L2 3200 3281 -32 446 274 9 0 chr6 128595800 128595913 -60683641 + MIR SINE MIR 34 147 -61 2222 108 0 0 chr6 128596574 128596869 -60682685 + AluSc SINE Alu 1 295 -14 315 161 0 0 chr6 128597715 128597771 -60681783 + (CA)n Simple_repeat Simple_repeat 2 57 0 751 208 17 0 chr6 128599133 128599253 -60680301 - FLAM_A SINE Alu -11 122 1 2537 170 13 62 chr6 128600215 128600745 -60678809 - MLT1D LTR MaLR 0 505 2 366 226 24 12 chr6 128600907 128600984 -60678570 + AluJo/FLAM SINE Alu 43 123 -179 1487 173 93 0 chr6 128600984 128601262 -60678292 - AluJb SINE Alu -8 304 1 226 354 72 11 chr6 128602587 128602768 -60676786 + L2 LINE L2 2181 2372 -942 23 0 0 0 chr6 128602976 128602999 -60676555 + AT_rich Low_complexity Low_complexity 1 23 0 2179 88 3 14 chr6 128603294 128603590 -60675964 - AluY SINE Alu -14 297 5 577 123 1 24 chr6 128603708 128603804 -60675750 - MER72 LTR ERV1 -494 103 10 2059 76 0 8 chr6 128603980 128604267 -60675287 + AluY SINE Alu 40 324 0 1917 133 69 36 chr6 128604269 128604630 -60674924 - THE1C LTR MaLR -2 373 1 210 71 0 0 chr6 128604752 128604780 -60674774 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 872 157 25 57 chr6 128606399 128606558 -60672996 + AluJo SINE Alu 90 243 -69 617 281 76 25 chr6 128606596 128606834 -60672720 + HAL1 LINE L1 273 522 -1985 211 247 26 0 chr6 128606882 128606959 -60672595 + (TTA)n Simple_repeat Simple_repeat 1 79 0 717 135 0 0 chr6 128606973 128607069 -60672485 - AluJ/FLAM SINE Alu -214 98 3 205 83 0 28 chr6 128607284 128607320 -60672234 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 337 243 28 9 chr6 128607326 128607433 -60672121 + L1MA4 LINE L1 5963 6071 -229 1111 75 8 0 chr6 128607446 128607579 -60671975 + AluSx SINE Alu 23 156 -156 2089 89 0 38 chr6 128607580 128607871 -60671683 + AluSx SINE Alu 21 300 -12 3977 226 14 33 chr6 128608310 128609530 -60670024 + HERVH LTR ERV1 800 1866 -4788 1996 126 192 16 chr6 128613040 128613404 -60666150 + MSTA LTR MaLR 1 428 0 2364 97 0 0 chr6 128613580 128613879 -60665675 - AluSg SINE Alu -11 299 1 721 151 134 47 chr6 128614079 128614251 -60665303 + MER105 DNA DNA 17 203 -1 2037 128 10 0 chr6 128615235 128615524 -60664030 + AluSx SINE Alu 1 292 -20 2100 124 7 0 chr6 128616800 128617099 -60662455 + AluSx SINE Alu 1 301 -11 532 319 83 72 chr6 128618145 128618578 -60660976 - L2 LINE L2 -7 3265 2828 287 262 154 13 chr6 128618673 128618822 -60660732 - MIR SINE MIR -14 248 79 224 322 58 25 chr6 128619036 128619157 -60660397 + MIR SINE MIR 70 194 -68 235 175 79 48 chr6 128619847 128619910 -60659644 - MER5A DNA MER1_type -37 152 88 1984 115 70 0 chr6 128619940 128620226 -60659328 + AluSg SINE Alu 1 306 -4 242 292 42 0 chr6 128621457 128621529 -60658025 + MIR SINE MIR 106 180 -82 27 81 0 0 chr6 128622274 128622336 -60657218 + AT_rich Low_complexity Low_complexity 1 62 0 201 146 24 24 chr6 128622787 128622828 -60656726 - MIR SINE MIR -63 199 159 262 270 217 48 chr6 128622837 128623026 -60656528 - MIR SINE MIR -11 251 31 2029 118 13 16 chr6 128623084 128623388 -60656166 - AluSx SINE Alu -9 303 1 294 123 14 110 chr6 128623411 128623484 -60656070 - L1PB2 LINE L1 -7 6144 6079 1352 125 9 49 chr6 128623514 128623738 -60655816 - L1PB2 LINE L1 -7 6144 5930 476 334 157 34 chr6 128624226 128624756 -60654798 + L2 LINE L2 2371 2965 -349 251 230 90 60 chr6 128624775 128624875 -60654679 + MIR SINE MIR 131 233 -29 289 331 79 79 chr6 128624882 128625187 -60654367 + L2 LINE L2 2968 3272 0 403 277 25 0 chr6 128625351 128625470 -60654084 - L1MC4 LINE L1 -54 7988 7867 1099 163 100 163 chr6 128625957 128626244 -60653310 - MER63B DNA MER1_type -687 375 118 7278 61 6 10 chr6 128626244 128627871 -60651683 + L1PA6 LINE L1 4526 6150 -4 1099 163 100 163 chr6 128627871 128627982 -60651572 - MER63B DNA MER1_type -944 118 2 27 49 0 0 chr6 128628350 128628391 -60651163 + AT_rich Low_complexity Low_complexity 1 41 0 306 244 100 0 chr6 128628601 128628691 -60650863 - L2 LINE L2 -3 3269 3171 577 232 169 0 chr6 128629075 128629217 -60650337 + MER45A DNA AcHobo 13 178 0 257 358 42 0 chr6 128629786 128629906 -60649648 + MIR3 SINE MIR 81 205 -3 2113 104 37 10 chr6 128631763 128632062 -60647492 - AluSg SINE Alu -2 308 2 227 272 112 59 chr6 128632135 128632305 -60647249 - MIR SINE MIR -62 146 25 5635 140 19 3 chr6 128632400 128633276 -60646278 - Tigger1 DNA MER2_type -1 2417 1528 221 167 19 0 chr6 128633781 128633835 -60645719 + CT-rich Low_complexity Low_complexity 1 55 0 605 101 25 0 chr6 128634770 128634849 -60644705 - AluSg/x SINE Alu -23 287 207 4687 156 18 34 chr6 128634857 128635888 -60643666 + L1 LINE L1 4354 5368 -778 1305 203 60 0 chr6 128636313 128636628 -60642926 + MER58B DNA MER1_type 6 339 -2 813 265 57 5 chr6 128636675 128636886 -60642668 - MIR SINE MIR -10 252 31 806 113 7 14 chr6 128637449 128637591 -60641963 + L1P4 LINE L1 5641 5781 -382 183 224 0 0 chr6 128638135 128638211 -60641343 + (TA)n Simple_repeat Simple_repeat 1 76 0 21 36 0 0 chr6 128639157 128639185 -60640369 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr6 128639563 128639598 -60639956 + AT_rich Low_complexity Low_complexity 1 35 0 1720 139 22 4 chr6 128639724 128640032 -60639522 + AluSx SINE Alu 3 315 0 1505 102 5 0 chr6 128640644 128640874 -60638680 - AluSq SINE Alu 0 307 77 318 294 79 0 chr6 128642183 128642309 -60637245 - L1M4 LINE L1 -1509 4637 4502 25 31 0 0 chr6 128642783 128642815 -60636739 + AT_rich Low_complexity Low_complexity 1 32 0 8028 67 1 9 chr6 128643340 128644502 -60635052 - L1P LINE L1 -2104 4042 2891 6642 99 26 15 chr6 128644604 128645673 -60633881 + Tigger3b DNA MER2_type 150 1230 -1 189 0 0 0 chr6 128645714 128645735 -60633819 + (T)n Simple_repeat Simple_repeat 1 21 0 263 335 203 14 chr6 128646232 128646444 -60633110 + L2 LINE L2 2819 3070 -202 2081 94 4 0 chr6 128647449 128647716 -60631838 - AluSg SINE Alu -2 308 41 394 213 32 158 chr6 128651324 128651545 -60628009 - L2 LINE L2 -8 3305 3113 836 195 6 24 chr6 128651545 128651709 -60627845 - AluJo SINE Alu -151 161 1 1705 158 39 11 chr6 128651719 128652004 -60627550 - AluJb SINE Alu -19 293 1 838 282 125 28 chr6 128652640 128652829 -60626725 - L1ME3A LINE L1 -86 6084 5915 2336 95 0 0 chr6 128652829 128653123 -60626431 - AluSc SINE Alu -15 294 1 838 282 125 28 chr6 128653123 128653523 -60626031 - L1ME3A LINE L1 -255 5915 5439 233 125 0 42 chr6 128653519 128653567 -60625987 + L1MC4 LINE L1 7992 8037 -5 * 279 179 60 0 chr6 128653600 128653667 -60625887 - MER115 DNA AcHobo -40 653 583 505 239 80 30 chr6 128653699 128653977 -60625577 - L1ME3A LINE L1 -719 5445 5153 514 272 28 17 chr6 128653983 128654285 -60625269 + L1MCc LINE L1 1341 1652 -4891 1796 183 0 16 chr6 128654477 128654794 -60624760 + AluJo SINE Alu 1 312 0 12307 46 6 1 chr6 128656525 128658170 -60621384 - L1P LINE L1 -3068 3078 1427 621 157 9 0 chr6 128658271 128658379 -60621175 - FLAM_C SINE Alu -14 129 21 322 311 23 30 chr6 128658696 128658828 -60620726 + HAL1b LINE L1 55 185 -1163 260 233 61 61 chr6 128658953 128659116 -60620438 + HAL1b LINE L1 311 473 -875 612 233 16 21 chr6 128659200 128659393 -60620161 + HAL1b LINE L1 606 797 -551 277 232 43 0 chr6 128659529 128659598 -60619956 - L2 LINE L2 0 3313 3242 2152 107 0 17 chr6 128659833 128660132 -60619422 - AluSp SINE Alu -19 294 1 1457 128 0 39 chr6 128660135 128660392 -60619162 - Tigger1 DNA MER2_type -942 1476 1230 3796 106 16 0 chr6 128660439 128660997 -60618557 + L1PA16 LINE L1 5591 6157 -9 2569 151 37 2 chr6 128661019 128661475 -60618079 - Tigger1 DNA MER2_type -1943 475 4 902 127 57 47 chr6 128661908 128662120 -60617434 - L1MB8 LINE L1 -9 6169 5956 383 198 21 31 chr6 128662611 128662707 -60616847 - MER67A LTR ERV1 0 543 449 292 218 103 0 chr6 128662714 128662792 -60616762 + LTR10A LTR ERV1 13 98 -511 1607 143 67 43 chr6 128662812 128663141 -60616413 + LTR10A LTR ERV1 212 548 -61 500 241 42 46 chr6 128663159 128663441 -60616113 - MER67B LTR ERV1 -79 582 267 364 155 28 0 chr6 128663538 128663609 -60615945 - MER67D LTR ERV1 -310 204 132 516 294 61 46 chr6 128663631 128664064 -60615490 - L1MEd LINE L1 -1026 1464 927 192 77 0 0 chr6 128664131 128664157 -60615397 + (T)n Simple_repeat Simple_repeat 1 26 0 2044 94 4 4 chr6 128664876 128665151 -60614403 - AluSc SINE Alu 0 309 35 400 340 119 0 chr6 128665297 128665491 -60614063 - L1MEd LINE L1 -5444 675 459 306 371 28 76 chr6 128665551 128665944 -60613610 - L1MEd LINE L1 -5742 377 4 1930 182 110 33 chr6 128666229 128666740 -60612814 + MLT1E2 LTR MaLR 69 618 -8 210 263 0 0 chr6 128667545 128667602 -60611952 + (TA)n Simple_repeat Simple_repeat 1 57 0 441 66 0 0 chr6 128667666 128667727 -60611827 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 308 311 8 0 chr6 128667728 128667860 -60611694 + (TA)n Simple_repeat Simple_repeat 2 134 0 1781 112 4 15 chr6 128668463 128668730 -60610824 + AluSx SINE Alu 41 304 -8 186 184 40 92 chr6 128669897 128669973 -60609581 - L2 LINE L2 0 3313 3242 207 0 0 0 chr6 128670672 128670695 -60608859 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 1723 111 23 8 chr6 128672495 128672783 -60606771 + AluSc SINE Alu 24 309 0 309 349 90 26 chr6 128674285 128674474 -60605080 + L2 LINE L2 2891 3091 -181 803 171 228 0 chr6 128674981 128675227 -60604327 + MER33 DNA MER1_type 1 302 -22 22 0 0 0 chr6 128675447 128675469 -60604085 + AT_rich Low_complexity Low_complexity 1 22 0 219 204 0 0 chr6 128675768 128675822 -60603732 + (TA)n Simple_repeat Simple_repeat 1 54 0 326 312 11 0 chr6 128675928 128676021 -60603533 - MIR3 SINE MIR -15 193 100 182 323 48 0 chr6 128676049 128676111 -60603443 + L2 LINE L2 3233 3297 -16 186 43 0 0 chr6 128676114 128676137 -60603417 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 343 333 78 22 chr6 128676526 128676706 -60602848 - MIR SINE MIR -11 251 62 211 299 13 13 chr6 128677463 128677540 -60602014 + CT-rich Low_complexity Low_complexity 4 80 0 2234 77 3 24 chr6 128678447 128678745 -60600809 + AluY SINE Alu 1 292 -19 330 286 11 11 chr6 128679151 128679242 -60600312 + MIR3 SINE MIR 100 190 -18 607 276 43 47 chr6 128679660 128679703 -60599851 - MIR SINE MIR -1 261 219 234 0 0 0 chr6 128679703 128679729 -60599825 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2192 108 7 3 chr6 128679731 128680026 -60599528 - AluSq SINE Alu -17 296 1 607 276 43 47 chr6 128680026 128680233 -60599321 - MIR SINE MIR -44 218 9 342 61 0 0 chr6 128680393 128680442 -60599112 + (TG)n Simple_repeat Simple_repeat 2 50 0 1163 209 43 31 chr6 128681741 128682226 -60597328 + MLT1E LTR MaLR 8 593 0 280 322 11 0 chr6 128682264 128682354 -60597200 + L2 LINE L2 2407 2497 -817 268 362 129 48 chr6 128682682 128683149 -60596405 + L2 LINE L2 2551 3056 -216 26 64 0 0 chr6 128685440 128685487 -60594067 + AT_rich Low_complexity Low_complexity 1 47 0 262 219 26 18 chr6 128685536 128685650 -60593904 + (TA)n Simple_repeat Simple_repeat 1 115 0 243 269 0 0 chr6 128685892 128685944 -60593610 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 4709 107 5 1 chr6 128688595 128689258 -60590296 + L1PA15 LINE L1 5495 6159 -6 654 120 86 51 chr6 128690275 128690392 -60589162 + FRAM SINE Alu 38 158 -18 298 148 98 0 chr6 128690636 128690697 -60588857 - FLAM_A SINE Alu -5 128 62 2222 71 39 36 chr6 128690735 128691044 -60588510 - AluY SINE Alu -1 310 1 227 286 48 16 chr6 128691178 128691241 -60588313 - MIR SINE MIR -115 93 29 24 32 0 0 chr6 128692534 128692565 -60586989 + AT_rich Low_complexity Low_complexity 1 31 0 2744 237 71 4 chr6 128694213 128695056 -60584498 + L1M4 LINE L1 3764 4663 -1483 592 234 51 11 chr6 128695144 128695319 -60584235 - LTR41 LTR ERVL -6 767 586 356 259 43 9 chr6 128695414 128695530 -60584024 - LTR41 LTR ERVL -319 454 335 907 207 35 0 chr6 128695544 128695742 -60583812 - LTR41 LTR ERVL -568 205 1 646 175 54 42 chr6 128695747 128695913 -60583641 + L1MA10 LINE L1 6164 6331 -3 2033 149 0 0 chr6 128695920 128696216 -60583338 + AluJb SINE Alu 1 296 -16 192 179 0 0 chr6 128696300 128696339 -60583215 + (TATG)n Simple_repeat Simple_repeat 2 40 0 488 250 17 80 chr6 128696844 128697020 -60582534 - L2 LINE L2 -16 3297 3133 180 115 0 0 chr6 128697069 128697095 -60582459 + L2 LINE L2 3154 3179 -93 504 326 102 17 chr6 128698799 128699143 -60580411 + L2 LINE L2 753 1125 -2189 1577 167 145 36 chr6 128699149 128699597 -60579957 + MLT1D LTR MaLR 8 504 -1 1011 317 94 16 chr6 128699597 128700042 -60579512 + L2 LINE L2 1119 1598 -1716 876 322 96 17 chr6 128700042 128700642 -60578912 + L2 LINE L2 2412 3063 -209 202 327 67 29 chr6 128701982 128702086 -60577468 + L2 LINE L2 3158 3265 -7 371 286 99 35 chr6 128704409 128704583 -60574971 + MIR SINE MIR 38 220 -42 228 372 74 0 chr6 128705008 128705129 -60574425 - MIR SINE MIR -80 182 53 976 293 40 24 chr6 128705717 128706092 -60573462 + MLT1I LTR MaLR 7 387 -22 324 341 89 8 chr6 128706796 128706919 -60572635 - L2 LINE L2 -4 3268 3136 1978 113 0 0 chr6 128706928 128707227 -60572327 + AluSg SINE Alu 25 323 0 259 313 45 45 chr6 128707356 128707468 -60572086 - MIR SINE MIR -77 131 20 23 33 0 0 chr6 128708603 128708633 -60570921 + AT_rich Low_complexity Low_complexity 1 30 0 183 129 0 0 chr6 128708847 128708878 -60570676 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 246 269 83 56 chr6 128709346 128709454 -60570100 - L2 LINE L2 0 3313 3203 2251 82 3 3 chr6 128709982 128710292 -60569262 - AluSp SINE Alu 0 310 1 315 250 0 0 chr6 128710327 128710395 -60569159 - MIR3 SINE MIR -21 187 120 23 68 0 0 chr6 128712148 128712192 -60567362 + AT_rich Low_complexity Low_complexity 1 44 0 387 285 44 39 chr6 128713489 128713675 -60565879 + MIR SINE MIR 29 225 -37 411 264 28 73 chr6 128713905 128714083 -60565471 + MIR SINE MIR 22 191 -71 913 95 17 0 chr6 128714159 128714275 -60565279 + AluSq/x SINE Alu 16 133 -180 265 238 12 0 chr6 128714647 128714727 -60564827 + L1ME2 LINE L1 5825 5905 -259 * 957 104 6 12 chr6 128714716 128714879 -60564675 + L1MB3 LINE L1 5742 5903 -280 189 0 0 0 chr6 128714879 128714900 -60564654 + (TA)n Simple_repeat Simple_repeat 1 21 0 206 118 0 0 chr6 128714900 128714934 -60564620 + (GA)n Simple_repeat Simple_repeat 1 34 0 * 273 274 10 0 chr6 128714913 128715015 -60564539 + (TA)n Simple_repeat Simple_repeat 1 103 0 371 345 20 20 chr6 128715071 128715219 -60564335 + MER5B DNA MER1_type 31 178 0 435 260 55 31 chr6 128715445 128715572 -60563982 - L2 LINE L2 -2 3311 3182 459 250 67 0 chr6 128716071 128716191 -60563363 + MIR SINE MIR 130 257 -5 2534 69 0 0 chr6 128716289 128716592 -60562962 - AluY SINE Alu -8 303 1 246 290 54 11 chr6 128716977 128717070 -60562484 - MIR3 SINE MIR -7 201 105 704 244 50 10 chr6 128717139 128717340 -60562214 - MER3 DNA MER1_type 0 209 1 1719 164 13 43 chr6 128717503 128717610 -60561944 + AluJo SINE Alu 11 120 -192 2496 68 0 0 chr6 128717610 128717906 -60561648 - AluY SINE Alu -15 296 1 1719 164 13 43 chr6 128717906 128718102 -60561452 + AluJo SINE Alu 120 305 -7 303 191 0 0 chr6 128720643 128720690 -60558864 - MIR SINE MIR -9 253 207 189 74 0 0 chr6 128721004 128721031 -60558523 + (GA)n Simple_repeat Simple_repeat 1 27 0 200 305 0 0 chr6 128721037 128721096 -60558458 + G-rich Low_complexity Low_complexity 3 61 0 555 284 118 5 chr6 128721224 128721428 -60558126 - MIR SINE MIR -25 237 11 530 217 175 0 chr6 128721592 128721735 -60557819 - MER5B DNA MER1_type 0 178 11 710 265 204 25 chr6 128722747 128723105 -60556449 + L2 LINE L2 2892 3313 0 2770 91 3 0 chr6 128723196 128723559 -60555995 + THE1B LTR MaLR 1 364 0 262 299 104 67 chr6 128724977 128725180 -60554374 - MIR SINE MIR 0 262 26 321 233 55 0 chr6 128725197 128725270 -60554284 - L2 LINE L2 0 3313 3237 1280 193 161 6 chr6 128725789 128726105 -60553449 - MLT1A1 LTR MaLR 0 365 1 201 132 75 75 chr6 128726778 128726831 -60552723 + MIR3 SINE MIR 9 61 -147 1207 248 103 15 chr6 128727038 128727505 -60552049 - MER113 DNA MER1_type? -6 515 8 626 244 182 22 chr6 128727828 128728053 -60551501 + MIR SINE MIR 2 262 0 405 0 0 0 chr6 128728891 128728936 -60550618 + (TG)n Simple_repeat Simple_repeat 2 46 0 817 232 15 46 chr6 128730149 128730352 -60549202 + MIR SINE MIR 57 251 -11 1767 231 17 45 chr6 128730540 128731078 -60548476 + MER65B LTR ERV1 1 523 -8 548 286 143 9 chr6 128731700 128731921 -60547633 + MIR SINE MIR 12 252 -10 1621 192 129 5 chr6 128733626 128734007 -60545547 + MSTA LTR MaLR 1 428 0 564 199 73 7 chr6 128734308 128734444 -60545110 + MLT1J LTR MaLR 102 246 -265 2105 116 0 0 chr6 128734634 128734910 -60544644 - AluSx SINE Alu -35 277 2 7017 52 21 6 chr6 128735122 128735367 -60544187 + L1PA8 LINE L1 4800 5040 -1132 2339 99 0 7 chr6 128735367 128735670 -60543884 + AluSq SINE Alu 1 301 -12 7017 52 21 6 chr6 128735670 128736787 -60542767 + L1PA8 LINE L1 5040 6172 0 21 36 0 0 chr6 128738813 128738841 -60540713 + AT_rich Low_complexity Low_complexity 1 28 0 1842 115 41 0 chr6 128738954 128739252 -60540302 - AluSg SINE Alu 0 309 1 328 261 33 22 chr6 128740833 128740925 -60538629 - MIR SINE MIR -75 187 95 721 191 0 0 chr6 128741408 128741523 -60538031 + FLAM_C SINE Alu 3 117 -26 394 304 93 82 chr6 128741653 128742139 -60537415 + L2 LINE L2 2819 3309 -4 370 330 17 0 chr6 128742524 128742642 -60536912 + MIR SINE MIR 48 167 -95 729 334 137 24 chr6 128743637 128744421 -60535133 + L2 LINE L2 1882 2753 -561 1716 153 25 3 chr6 128744426 128744740 -60534814 + L1MA7 LINE L1 5960 6280 -11 354 328 75 71 chr6 128744771 128745284 -60534270 + L2 LINE L2 2737 3263 -9 428 285 90 0 chr6 128745502 128745646 -60533908 - MIR SINE MIR -50 212 56 189 275 25 100 chr6 128746078 128746158 -60533396 - L3 LINE CR1 -4 1573 1500 1854 246 89 14 chr6 128746198 128746758 -60532796 + L1ME3A LINE L1 5569 6170 0 324 0 0 0 chr6 128748574 128748610 -60530944 + (TA)n Simple_repeat Simple_repeat 1 36 0 344 308 139 46 chr6 128749372 128749804 -60529750 + L2 LINE L2 2488 2959 -355 305 291 79 16 chr6 128749964 128750091 -60529463 + L2 LINE L2 3179 3313 0 291 387 7 19 chr6 128750508 128750663 -60528891 + MIR SINE MIR 1 153 -109 359 330 116 9 chr6 128750867 128751091 -60528463 + MIR SINE MIR 15 262 0 216 324 29 0 chr6 128752626 128752694 -60526860 - MIR SINE MIR -128 134 65 513 256 58 7 chr6 128752792 128752929 -60526625 + MIR SINE MIR 73 216 -46 735 148 7 30 chr6 128752935 128753070 -60526484 + FLAM_A SINE Alu 1 132 -1 1021 180 0 0 chr6 128754024 128754185 -60525369 - FRAM SINE Alu -16 160 1 919 186 118 23 chr6 128754430 128754650 -60524904 - MIR SINE MIR -9 253 13 22 0 0 0 chr6 128755123 128755145 -60524409 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 128756755 128756779 -60522775 + AT_rich Low_complexity Low_complexity 1 24 0 236 234 13 13 chr6 128757279 128757356 -60522198 + (TA)n Simple_repeat Simple_repeat 2 78 0 22 70 0 0 chr6 128757400 128757443 -60522111 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr6 128757924 128757946 -60521608 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 128757961 128757984 -60521570 + AT_rich Low_complexity Low_complexity 1 23 0 262 277 19 55 chr6 128758585 128758743 -60520811 - MIR SINE MIR -13 249 50 2232 124 0 0 chr6 128760611 128760918 -60518636 + AluSx SINE Alu 1 307 -5 224 191 135 11 chr6 128760981 128761070 -60518484 + L2 LINE L2 2291 2390 -924 516 303 136 63 chr6 128761084 128761496 -60518058 + L2 LINE L2 2805 3246 -26 2232 95 14 0 chr6 128761747 128762041 -60517513 + AluSc SINE Alu 1 298 -11 193 128 154 0 chr6 128763908 128763947 -60515607 - MER5B DNA MER1_type -133 45 1 565 178 0 96 chr6 128766170 128766305 -60513249 + L2 LINE L2 3191 3312 -1 412 302 116 45 chr6 128766351 128766593 -60512961 - MIR SINE MIR -2 260 2 1845 208 53 100 chr6 128766675 128767256 -60512298 - MLT2B3 LTR ERVL 0 554 1 789 170 0 7 chr6 128767363 128767498 -60512056 - MLT1B LTR MaLR -10 380 247 733 214 19 6 chr6 128767513 128767672 -60511882 + MLT2B3 LTR ERVL 300 460 -94 654 182 103 47 chr6 128767685 128767899 -60511655 - MLT1B LTR MaLR -164 226 1 267 79 0 0 chr6 128768901 128768939 -60510615 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr6 128769204 128769232 -60510322 + AT_rich Low_complexity Low_complexity 1 28 0 344 371 19 13 chr6 128769468 128769627 -60509927 + MIR3 SINE MIR 43 202 -6 1959 200 126 35 chr6 128769798 128770183 -60509371 + MLT2B1 LTR ERVL 20 455 -65 2012 165 33 30 chr6 128770183 128770546 -60509008 + THE1B LTR MaLR 1 364 0 1959 200 126 35 chr6 128770546 128770619 -60508935 + MLT2B1 LTR ERVL 455 520 0 1887 241 0 14 chr6 128770619 128771046 -60508508 + MLT-int LTR MaLR 1 421 -1314 980 61 0 15 chr6 128771084 128771215 -60508339 - AluY SINE Alu 0 311 183 2669 237 35 103 chr6 128771215 128772223 -60507331 + MLT1A1-int LTR MaLR 432 1370 -1 1358 198 69 22 chr6 128772224 128772542 -60507012 + MLT1A1 LTR MaLR 1 333 -32 1337 157 5 0 chr6 128772542 128772759 -60506795 + Tigger1 DNA MER2_type 1 218 -2200 1157 194 27 5 chr6 128772761 128772983 -60506571 - AluJo SINE Alu 0 312 86 13881 128 21 12 chr6 128772983 128775166 -60504388 + Tigger1 DNA MER2_type 217 2418 0 254 86 0 0 chr6 128775166 128775200 -60504354 + MLT1A1 LTR MaLR 357 390 0 1715 238 243 48 chr6 128775489 128776756 -60502798 - HAL1 LINE L1 -3 2504 991 1633 282 98 18 chr6 128776894 128777565 -60501989 - HAL1 LINE L1 -1736 771 47 231 408 0 0 chr6 128777568 128777666 -60501888 + L2 LINE L2 3174 3271 -1 22 0 0 0 chr6 128779013 128779035 -60500519 + AT_rich Low_complexity Low_complexity 1 22 0 489 247 62 7 chr6 128779317 128779463 -60500091 - MIR SINE MIR -44 218 65 21 0 0 0 chr6 128779515 128779536 -60500018 + AT_rich Low_complexity Low_complexity 1 21 0 259 337 138 29 chr6 128780263 128780509 -60499045 - L2 LINE L2 -131 3141 2869 665 240 173 22 chr6 128780520 128780745 -60498809 + MIR SINE MIR 2 260 -2 4384 150 11 14 chr6 128781328 128782047 -60497507 + MER72 LTR ERV1 5 721 -1 3408 94 114 27 chr6 128782769 128783288 -60496266 + MER61E LTR ERV1 2 565 -4 219 146 0 0 chr6 128784144 128784185 -60495369 + (T)n Simple_repeat Simple_repeat 1 41 0 1882 162 15 6 chr6 128784507 128784847 -60494707 - L1PA16 LINE L1 -1 6165 5823 3151 221 11 1 chr6 128784847 128785549 -60494005 + L1PA15-16 LINE L1 1711 2419 -4430 557 204 23 8 chr6 128786459 128786591 -60492963 - MER103 DNA DNA -2 164 31 3029 165 42 59 chr6 128786601 128786970 -60492584 + MER67C LTR ERV1 1 354 -356 1996 128 13 22 chr6 128786970 128787283 -60492271 + AluSq SINE Alu 1 310 -3 3029 165 42 59 chr6 128787283 128787621 -60491933 + MER67C LTR ERV1 354 696 -14 661 258 72 21 chr6 128787860 128788054 -60491500 - MER105 DNA DNA 0 204 1 1467 266 64 14 chr6 128788105 128788526 -60491028 + L2 LINE L2 2262 2703 -611 514 255 155 25 chr6 128788531 128788691 -60490863 + L2 LINE L2 2857 3049 -264 2534 58 12 113 chr6 128788691 128789108 -60490446 - THE1C LTR MaLR 0 375 1 514 255 155 25 chr6 128789108 128789147 -60490407 + L2 LINE L2 3049 3082 -231 655 198 8 8 chr6 128789176 128789302 -60490252 + FLAM_C SINE Alu 1 126 -17 293 259 102 110 chr6 128789307 128789543 -60490011 + L2 LINE L2 3066 3299 -14 799 150 81 40 chr6 128790172 128790243 -60489311 - LTR49 LTR ERV1 0 595 528 1604 218 88 87 chr6 128790243 128790969 -60488585 + LTR8A LTR ERV1 1 727 0 799 150 81 40 chr6 128790969 128791070 -60488484 - LTR49 LTR ERV1 -67 528 416 * 1083 147 207 4 chr6 128791064 128791382 -60488172 - LTR29 LTR ERV1 -198 424 1 2089 252 31 74 chr6 128792091 128792689 -60486865 - MER21B LTR ERV1 -99 764 207 1839 133 31 80 chr6 128792689 128793041 -60486513 - MER1B DNA MER1_type -2 335 1 2089 252 31 74 chr6 128793041 128793240 -60486314 - MER21B LTR ERV1 -656 207 1 209 234 31 0 chr6 128793269 128793333 -60486221 + L2 LINE L2 3171 3236 -77 408 270 67 45 chr6 128793541 128793719 -60485835 + MIR SINE MIR 28 209 -53 271 200 45 19 chr6 128794772 128794927 -60484627 + (CTATA)n Simple_repeat Simple_repeat 4 162 0 273 250 95 26 chr6 128795407 128795523 -60484031 - MER20B DNA MER1_type -594 189 66 209 376 69 0 chr6 128795741 128795842 -60483712 + MIR SINE MIR 59 166 -96 29 0 0 0 chr6 128796317 128796346 -60483208 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 128796984 128797012 -60482542 + AT_rich Low_complexity Low_complexity 1 28 0 993 321 115 23 chr6 128797807 128798461 -60481093 - L3 LINE CR1 -177 1400 687 1699 213 84 65 chr6 128799812 128800552 -60479002 - LTR1B LTR ERV1 0 826 1 1054 170 213 4 chr6 128801212 128801489 -60478065 - L1MD3 LINE L1 -9 7986 7652 2404 69 0 3 chr6 128802061 128802367 -60477187 + AluY SINE Alu 1 305 -6 234 91 0 0 chr6 128803766 128803799 -60475755 + (A)n Simple_repeat Simple_repeat 1 33 0 229 231 0 15 chr6 128804429 128804494 -60475060 + (TA)n Simple_repeat Simple_repeat 2 65 0 802 274 93 4 chr6 128804622 128804859 -60474695 - MIR SINE MIR -3 259 2 2184 130 0 0 chr6 128805025 128805333 -60474221 - AluSx SINE Alu -2 310 3 21 57 0 0 chr6 128807091 128807126 -60472428 + AT_rich Low_complexity Low_complexity 1 35 0 591 169 0 0 chr6 128807734 128807823 -60471731 - 5S rRNA rRNA -31 90 2 429 241 26 26 chr6 128808119 128808235 -60471319 + MIR3 SINE MIR 87 202 -6 28 48 0 0 chr6 128808651 128808693 -60470861 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr6 128808931 128808954 -60470600 + AT_rich Low_complexity Low_complexity 1 23 0 423 307 40 57 chr6 128809221 128809449 -60470105 + L2 LINE L2 3089 3312 -1 243 188 0 0 chr6 128811708 128811756 -60467798 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 549 283 40 46 chr6 128811781 128812110 -60467444 - HAL1b LINE L1 -526 822 496 297 282 32 65 chr6 128812110 128812234 -60467320 - L3 LINE CR1 -123 1454 1335 369 353 47 18 chr6 128812452 128812622 -60466932 - MIR3 SINE MIR -18 190 16 277 239 15 0 chr6 128813637 128813704 -60465850 + MIR3 SINE MIR 141 208 0 404 293 25 81 chr6 128815149 128815347 -60464207 + MER5A DNA MER1_type 1 187 -2 26 0 0 0 chr6 128815536 128815562 -60463992 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chr6 128817161 128817185 -60462369 + (T)n Simple_repeat Simple_repeat 1 24 0 2059 100 28 14 chr6 128817634 128817925 -60461629 - AluSg SINE Alu -15 295 1 1225 129 41 5 chr6 128818012 128818206 -60461348 + MSTA LTR MaLR 1 201 -227 1427 129 5 0 chr6 128818343 128818553 -60461001 + MSTA LTR MaLR 218 428 0 657 301 49 62 chr6 128818695 128819101 -60460453 + MLT1K LTR MaLR 171 571 -17 719 207 0 7 chr6 128819393 128819528 -60460026 - AluJo SINE Alu -178 134 1 389 317 110 73 chr6 128819535 128820080 -60459474 + L2 LINE L2 2282 2846 -468 * 459 279 0 9 chr6 128820076 128820187 -60459367 + L2 LINE L2 3203 3312 -1 31 0 0 0 chr6 128821337 128821368 -60458186 + AT_rich Low_complexity Low_complexity 1 31 0 1934 115 0 0 chr6 128821923 128822183 -60457371 + AluSx SINE Alu 47 306 -6 236 337 95 53 chr6 128824395 128824510 -60455044 + MIR3 SINE MIR 32 158 -50 523 241 77 29 chr6 128824510 128824680 -60454874 - MER5B DNA MER1_type 0 178 1 236 337 95 53 chr6 128824680 128824733 -60454821 + MIR3 SINE MIR 158 207 -1 691 188 0 0 chr6 128825518 128825646 -60453908 - L1PB4 LINE L1 -1 6155 6028 512 325 18 31 chr6 128826307 128826470 -60453084 + MER91A DNA MER1_type 36 196 0 312 27 0 0 chr6 128827036 128827073 -60452481 + (CA)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr6 128828170 128828190 -60451364 + (T)n Simple_repeat Simple_repeat 1 20 0 1083 207 86 3 chr6 128829123 128829413 -60450141 + MER33 DNA MER1_type 10 323 -1 488 276 154 78 chr6 128829550 128829650 -60449904 + MLT1H LTR MaLR 3 94 -455 2441 15 0 0 chr6 128829650 128829919 -60449635 + AluYb8 SINE Alu 44 312 -6 488 276 154 78 chr6 128829919 128830279 -60449275 + MLT1H LTR MaLR 94 498 -51 183 42 0 0 chr6 128830654 128830678 -60448876 + (TTG)n Simple_repeat Simple_repeat 1 24 0 365 291 8 15 chr6 128830696 128830830 -60448724 + MLT1K LTR MaLR 22 154 -395 482 246 91 29 chr6 128831352 128831527 -60448027 + MIR SINE MIR 6 191 -71 185 0 0 39 chr6 128834947 128834954 -60444600 + (TA)n Simple_repeat Simple_repeat 1 7 -18 2249 116 0 3 chr6 128834954 128835257 -60444297 + AluSx SINE Alu 1 302 -10 185 0 0 39 chr6 128835257 128835275 -60444279 + (TA)n Simple_repeat Simple_repeat 7 25 0 36 0 0 0 chr6 128835517 128835553 -60444001 + AT_rich Low_complexity Low_complexity 1 36 0 520 246 8 22 chr6 128835640 128835774 -60443780 - L2 LINE L2 -3 3310 3179 806 315 53 7 chr6 128836617 128836919 -60442635 + LTR16A LTR ERVL 120 435 -15 2570 54 0 0 chr6 128837336 128837634 -60441920 + AluY SINE Alu 1 298 -13 600 303 129 24 chr6 128838571 128838983 -60440571 + MLT1K LTR MaLR 104 558 -30 262 236 69 14 chr6 128839009 128839081 -60440473 + L2 LINE L2 3197 3272 0 200 237 17 34 chr6 128839120 128839179 -60440375 + MIR SINE MIR 95 152 -56 716 145 129 79 chr6 128839853 128839951 -60439603 - Charlie5 DNA MER1_type 0 2585 2493 1366 174 59 52 chr6 128839951 128840239 -60439315 + AluJo SINE Alu 1 290 -22 716 145 129 79 chr6 128840239 128840381 -60439173 - Charlie5 DNA MER1_type -92 2493 2333 245 174 29 58 chr6 128841061 128841130 -60438424 + GA-rich Low_complexity Low_complexity 5 71 0 2011 139 32 61 chr6 128841581 128841956 -60437598 - THE1B LTR MaLR 0 364 1 10772 89 23 43 chr6 128841956 128843143 -60436411 - THE1B-int LTR MaLR 0 1580 433 2460 78 0 0 chr6 128843143 128843450 -60436104 + AluY SINE Alu 1 307 -4 10772 89 23 43 chr6 128843450 128843875 -60435679 - THE1B-int LTR MaLR -1147 433 1 2159 137 30 30 chr6 128843875 128844239 -60435315 - THE1B LTR MaLR 0 364 1 783 255 62 14 chr6 128844342 128844550 -60435004 - MIR SINE MIR -11 251 34 1604 187 36 13 chr6 128844759 128844943 -60434611 - AluJo SINE Alu 0 312 117 189 94 0 0 chr6 128844943 128844975 -60434579 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 1604 187 36 13 chr6 128844975 128845095 -60434459 - AluJo SINE Alu -195 117 1 25 31 0 0 chr6 128846366 128846398 -60433156 + AT_rich Low_complexity Low_complexity 1 32 0 199 319 112 9 chr6 128846444 128846560 -60432994 + L2 LINE L2 3180 3307 -6 22 80 0 0 chr6 128846930 128846980 -60432574 + AT_rich Low_complexity Low_complexity 1 50 0 241 304 43 11 chr6 128847749 128847841 -60431713 - L2 LINE L2 -282 2990 2896 188 302 16 16 chr6 128847978 128848041 -60431513 - L2 LINE L2 -621 2693 2631 196 274 39 0 chr6 128848926 128848977 -60430577 - L2 LINE L2 -73 3199 3147 2367 94 0 0 chr6 128849302 128849601 -60429953 + AluY SINE Alu 1 299 -12 25 83 0 0 chr6 128849684 128849744 -60429810 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr6 128850219 128850240 -60429314 + AT_rich Low_complexity Low_complexity 1 21 0 313 318 115 22 chr6 128850983 128851436 -60428118 - L1ME4a LINE L1 -63 6058 5564 309 264 94 19 chr6 128851526 128851685 -60427869 - L1ME4a LINE L1 -2370 5438 5268 736 336 133 29 chr6 128851689 128851919 -60427635 - L2 LINE L2 -1012 2302 2097 1975 133 7 17 chr6 128851919 128852219 -60427335 - AluJo SINE Alu -15 297 1 736 336 133 29 chr6 128852219 128852672 -60426882 - L2 LINE L2 -1217 2097 1548 * 885 345 97 8 chr6 128852671 128853178 -60426376 + L2 LINE L2 1867 2418 -896 267 183 77 58 chr6 128853205 128853309 -60426245 - L1MC/D LINE L1 -2033 5775 5670 532 295 82 0 chr6 128856146 128856329 -60423225 - MIR SINE MIR 0 262 65 449 234 36 0 chr6 128856803 128856914 -60422640 - MIR3 SINE MIR -13 195 81 369 302 24 8 chr6 128857668 128857794 -60421760 + MIR3 SINE MIR 81 208 0 463 332 106 17 chr6 128858024 128858259 -60421295 - L3 LINE CR1 -6 1571 1316 22 56 0 0 chr6 128858502 128858538 -60421016 + AT_rich Low_complexity Low_complexity 1 36 0 618 247 36 34 chr6 128859041 128859350 -60420204 - L1ME LINE L1 -5277 1670 1320 5291 261 141 12 chr6 128859786 128861812 -60417742 - L2 LINE L2 -279 3034 755 1405 226 43 6 chr6 128862614 128862942 -60416612 - MER58B DNA MER1_type -1 340 1 255 0 0 0 chr6 128864535 128864566 -60414988 - MADE1 DNA Mariner -49 31 1 398 343 50 93 chr6 128866916 128867237 -60412317 - L2 LINE L2 -2 3270 2964 201 196 22 0 chr6 128869175 128869221 -60410333 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 34 0 0 0 chr6 128870212 128870246 -60409308 + AT_rich Low_complexity Low_complexity 1 34 0 24 85 0 0 chr6 128870547 128870606 -60408948 + AT_rich Low_complexity Low_complexity 1 59 0 21 36 0 0 chr6 128871941 128871969 -60407585 + AT_rich Low_complexity Low_complexity 1 28 0 1896 195 48 52 chr6 128872150 128872308 -60407246 + L1PA10 LINE L1 5628 5785 -383 1755 96 4 4 chr6 128872308 128872555 -60406999 + L1PA13 LINE L1 5909 6159 -4 1896 195 48 52 chr6 128872555 128872939 -60406615 + L1PA10 LINE L1 5785 6168 0 263 276 112 13 chr6 128872930 128873082 -60406472 + L1ME4a LINE L1 5767 5933 -188 * 313 273 103 30 chr6 128873087 128873252 -60406302 + L1ME4a LINE L1 5944 6120 -1 1159 170 40 0 chr6 128873358 128873582 -60405972 + L1MB1 LINE L1 5935 6167 -1 301 243 29 0 chr6 128874187 128874290 -60405264 - L1ME4a LINE L1 -26 6095 5990 695 219 88 70 chr6 128874320 128874548 -60405006 - MIR SINE MIR -17 245 14 325 240 13 13 chr6 128875610 128875685 -60403869 + MLT1H1 LTR MaLR 152 226 -329 252 186 0 0 chr6 128876112 128876155 -60403399 + MIR SINE MIR 211 253 -9 343 323 153 18 chr6 128878593 128878875 -60400679 + L3 LINE CR1 361 680 -897 203 296 74 25 chr6 128878936 128879017 -60400537 + MIR SINE MIR 112 196 -66 196 342 111 0 chr6 128879066 128879183 -60400371 + L3 LINE CR1 689 818 -759 1366 204 105 43 chr6 128879272 128879645 -60399909 - MSTD LTR MaLR 0 396 1 325 284 106 102 chr6 128879704 128879795 -60399759 - L2 LINE L2 -39 3233 3144 1395 181 100 25 chr6 128879795 128880115 -60399439 + MER2 DNA MER2_type 1 344 0 325 284 106 102 chr6 128880115 128880674 -60398880 - L2 LINE L2 -128 3144 2574 244 306 240 23 chr6 128880702 128880960 -60398594 - L2 LINE L2 -1050 2264 1951 337 360 22 22 chr6 128881373 128881512 -60398042 + L3 LINE CR1 1426 1564 -13 2146 48 45 0 chr6 128881539 128881807 -60397747 - AluY SINE Alu -8 303 24 307 283 10 10 chr6 128884173 128884272 -60395282 - MIR3 SINE MIR -48 160 62 237 366 14 0 chr6 128884358 128884429 -60395125 - L2 LINE L2 -79 3193 3122 251 374 75 0 chr6 128884729 128884836 -60394718 - L2 LINE L2 -19 3253 3139 886 253 49 13 chr6 128885492 128885717 -60393837 - MIR SINE MIR -10 252 20 7670 85 19 3 chr6 128885723 128886777 -60392777 + MER11C LTR ERVK 1 1071 0 4742 167 28 26 chr6 128887205 128888299 -60391255 + L1MB8 LINE L1 5088 6178 0 21 0 0 0 chr6 128890258 128890279 -60389275 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 128890991 128891014 -60388540 + AT_rich Low_complexity Low_complexity 1 23 0 5480 170 110 40 chr6 128891661 128893015 -60386539 - Charlie1a DNA MER1_type 0 1455 7 317 154 0 0 chr6 128893338 128893390 -60386164 - L1MC4 LINE L1 -1339 6703 6652 2430 62 0 7 chr6 128895401 128895708 -60383846 + AluY SINE Alu 1 305 -6 379 306 75 17 chr6 128896105 128896278 -60383276 - MER5A DNA MER1_type 0 189 7 1875 132 0 77 chr6 128896528 128896855 -60382699 + AluSx SINE Alu 1 302 -10 342 211 0 14 chr6 128897724 128897795 -60381759 - Tigger5 DNA MER2_type -1 2322 2253 356 209 0 15 chr6 128897796 128897863 -60381691 - Tigger5 DNA MER2_type -2257 66 1 181 57 57 0 chr6 128898223 128898258 -60381296 + A-rich Low_complexity Low_complexity 6 42 0 2189 125 7 0 chr6 128898637 128898940 -60380614 - AluSx SINE Alu -7 305 1 2650 198 79 72 chr6 128899381 128899845 -60379709 + L1ME2 LINE L1 4902 5361 -803 1818 154 26 7 chr6 128899845 128900151 -60379403 + AluJb SINE Alu 1 312 0 2650 198 79 72 chr6 128900151 128900912 -60378642 + L1ME2 LINE L1 5361 6155 -9 764 220 12 52 chr6 128900966 128901021 -60378533 - MER5A DNA MER1_type -22 167 111 1924 145 0 7 chr6 128901021 128901325 -60378229 - AluSx SINE Alu -10 302 1 764 220 12 52 chr6 128901325 128901442 -60378112 - MER5A DNA MER1_type -78 111 2 205 368 0 53 chr6 128904145 128904259 -60375295 + MIR SINE MIR 33 140 -122 23 54 0 0 chr6 128904617 128904654 -60374900 + AT_rich Low_complexity Low_complexity 1 37 0 315 278 73 99 chr6 128904690 128904963 -60374591 - L2 LINE L2 0 3313 3048 418 289 227 0 chr6 128905761 128905955 -60373599 + MIR SINE MIR 8 245 -17 216 0 0 0 chr6 128906105 128906129 -60373425 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 577 279 65 4 chr6 128906712 128906941 -60372613 - L1MC4a LINE L1 -1919 5889 5647 180 77 0 0 chr6 128907111 128907137 -60372417 + (TAA)n Simple_repeat Simple_repeat 2 27 0 362 303 97 0 chr6 128907207 128907372 -60372182 - MIR SINE MIR -19 243 63 360 245 53 21 chr6 128907897 128907991 -60371563 + L2 LINE L2 3188 3284 -29 198 0 0 0 chr6 128907991 128908013 -60371541 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 236 30 30 0 chr6 128908012 128908045 -60371509 + (TA)n Simple_repeat Simple_repeat 1 34 0 538 218 0 0 chr6 128908046 128908147 -60371407 - FLAM_C SINE Alu -28 115 15 874 279 141 12 chr6 128909920 128910253 -60369301 + MLT1I LTR MaLR 21 396 -13 426 321 71 54 chr6 128910555 128910795 -60368759 + MIR SINE MIR 1 244 -18 216 0 0 0 chr6 128912755 128912779 -60366775 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 542 215 66 16 chr6 128912974 128913095 -60366459 - L2 LINE L2 -5 3308 3182 204 243 100 43 chr6 128913182 128913212 -60366342 + L2 LINE L2 3239 3266 -47 1766 153 22 4 chr6 128913212 128913509 -60366045 + AluSx SINE Alu 3 304 0 204 243 100 43 chr6 128913509 128913547 -60366007 + L2 LINE L2 3266 3312 -1 24 0 0 0 chr6 128914889 128914913 -60364641 + AT_rich Low_complexity Low_complexity 1 24 0 503 116 0 12 chr6 128915290 128915376 -60364178 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 226 254 17 0 chr6 128918040 128918099 -60361455 - MER94 DNA DNA -51 83 24 23 0 0 0 chr6 128918514 128918537 -60361017 + AT_rich Low_complexity Low_complexity 1 23 0 32 43 0 0 chr6 128919067 128919113 -60360441 + AT_rich Low_complexity Low_complexity 1 46 0 191 302 19 0 chr6 128919528 128919581 -60359973 + L2 LINE L2 3244 3297 -16 282 288 0 27 chr6 128919642 128919715 -60359839 - L2 LINE L2 -2 3270 3200 211 348 183 13 chr6 128920068 128920298 -60359256 - L2 LINE L2 -508 2806 2538 692 87 0 39 chr6 128920741 128920845 -60358709 - AluY SINE Alu -14 297 198 219 284 62 25 chr6 128921204 128921285 -60358269 - L2 LINE L2 -50 3222 3139 1860 195 30 0 chr6 128921571 128921909 -60357645 + MER7A DNA MER2_type 1 346 0 412 309 194 10 chr6 128922182 128922383 -60357171 + MIR SINE MIR 7 244 -18 2377 80 3 10 chr6 128922747 128923049 -60356505 - AluSc SINE Alu -9 300 1 1839 142 7 0 chr6 128923424 128923726 -60355828 + AluSx SINE Alu 1 304 0 305 280 0 52 chr6 128923740 128923837 -60355717 - MIR SINE MIR -83 125 33 330 345 9 0 chr6 128924908 128925024 -60354530 + MIR SINE MIR 41 157 -105 332 202 174 37 chr6 128925052 128925161 -60354393 + MIR SINE MIR 113 236 -26 22 0 0 0 chr6 128925180 128925202 -60354352 + AT_rich Low_complexity Low_complexity 1 22 0 351 206 16 8 chr6 128925337 128925463 -60354091 + (TA)n Simple_repeat Simple_repeat 1 127 0 197 200 53 47 chr6 128927099 128927163 -60352391 + L2 LINE L2 3207 3312 -1 623 177 15 8 chr6 128928233 128928363 -60351191 + GA-rich Low_complexity Low_complexity 1 131 0 6066 113 4 1 chr6 128928464 128929306 -60350248 - THE1B-int LTR MaLR -341 1239 396 994 84 7 0 chr6 128929306 128929449 -60350105 - THE1B-int LTR MaLR -1436 144 1 2118 134 45 31 chr6 128929449 128929808 -60349746 - THE1B LTR MaLR 0 364 1 661 221 32 16 chr6 128929808 128929998 -60349556 - L1MC3 LINE L1 -105 7680 7488 * 1808 215 88 34 chr6 128929977 128930300 -60349254 - L1MC3 LINE L1 -1106 6679 6318 1518 180 49 14 chr6 128930300 128930584 -60348970 + AluJo SINE Alu 3 296 -16 1808 215 88 34 chr6 128930584 128930758 -60348796 - L1MC3 LINE L1 -1467 6318 6155 304 208 69 14 chr6 128930769 128930841 -60348713 - AluJ/FRAM SINE Alu -2 300 225 2269 40 0 0 chr6 128930943 128931242 -60348312 - L1P LINE L1 -2793 3353 3055 7880 22 0 0 chr6 128931242 128932849 -60346705 + L1HS LINE L1 4549 6155 0 23 0 0 0 chr6 128932862 128932885 -60346669 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr6 128932898 128932922 -60346632 + (A)n Simple_repeat Simple_repeat 1 24 0 590 174 10 0 chr6 128933441 128933539 -60346015 + L1M2 LINE L1 5628 5726 -565 210 185 0 56 chr6 128933739 128933793 -60345761 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 471 118 0 0 chr6 128934035 128934111 -60345443 + (GA)n Simple_repeat Simple_repeat 2 77 0 316 274 207 15 chr6 128935026 128935161 -60344393 - L1M2 LINE L1 -6148 701 541 252 0 0 0 chr6 128935266 128935294 -60344260 + (CGG)n Simple_repeat Simple_repeat 2 29 0 220 241 11 35 chr6 128935884 128935971 -60343583 + C-rich Low_complexity Low_complexity 4 88 0 1606 175 0 35 chr6 128938528 128938813 -60340741 + AluJo SINE Alu 13 287 -25 191 293 66 47 chr6 128938966 128939004 -60340550 - L2 LINE L2 -4 3309 3273 1693 168 13 20 chr6 128939004 128939308 -60340246 + AluJo SINE Alu 3 304 -8 191 293 66 47 chr6 128939308 128939375 -60340179 - L2 LINE L2 -40 3273 3202 824 133 43 62 chr6 128939666 128939875 -60339679 - MER33 DNA MER1_type -1 323 119 1068 172 6 0 chr6 128939875 128940049 -60339505 + MLT1E2 LTR MaLR 1 175 -451 214 146 45 45 chr6 128940560 128940649 -60338905 + (TA)n Simple_repeat Simple_repeat 1 89 0 781 168 87 41 chr6 128941044 128941158 -60338396 + MER2 DNA MER2_type 2 130 -215 2290 106 0 3 chr6 128941158 128941461 -60338093 - AluSp SINE Alu -11 302 1 781 168 87 41 chr6 128941461 128941542 -60338012 + MER2 DNA MER2_type 130 206 -139 36 40 0 0 chr6 128941542 128941592 -60337962 + AT_rich Low_complexity Low_complexity 1 50 0 2494 54 3 0 chr6 128941802 128942096 -60337458 + AluY SINE Alu 1 295 -16 1904 225 23 38 chr6 128943606 128944078 -60335476 + MLT1E2 LTR MaLR 162 626 0 680 171 8 17 chr6 128944083 128944200 -60335354 - MER33 DNA MER1_type -207 117 2 1521 156 62 13 chr6 128945127 128945435 -60334119 + MER33 DNA MER1_type 2 324 0 229 274 0 16 chr6 128945445 128945507 -60334047 - MER5A DNA MER1_type -1 188 128 435 313 24 24 chr6 128945559 128945725 -60333829 + MER5B DNA MER1_type 13 178 0 247 175 0 0 chr6 128946062 128946102 -60333452 - MER5A DNA MER1_type -2 187 148 204 214 0 0 chr6 128946374 128946430 -60333124 + A-rich Low_complexity Low_complexity 4 59 0 313 237 136 8 chr6 128946786 128946904 -60332650 + MER103 DNA DNA 34 166 0 263 301 30 83 chr6 128947365 128947424 -60332130 + MLT1J LTR MaLR 3 64 -447 768 131 23 0 chr6 128947424 128947554 -60332000 + MER94 DNA DNA 2 134 0 263 301 30 83 chr6 128947554 128947627 -60331927 + MLT1J LTR MaLR 64 128 -383 528 297 96 44 chr6 128947791 128948040 -60331514 + MLT1J LTR MaLR 238 499 -12 1417 180 42 0 chr6 128948093 128948382 -60331172 - MER33 DNA MER1_type -22 302 2 672 265 30 6 chr6 128950385 128950551 -60329003 + MIR SINE MIR 20 189 -73 230 314 83 33 chr6 128950636 128950757 -60328797 - L2 LINE L2 -9 3263 3137 218 329 32 52 chr6 128951237 128951392 -60328162 - MIR SINE MIR -71 191 40 206 231 22 55 chr6 128951611 128951702 -60327852 + GA-rich Low_complexity Low_complexity 3 90 0 185 348 152 0 chr6 128952273 128952457 -60327097 + MIR SINE MIR 33 244 -18 414 259 253 0 chr6 128953511 128953685 -60325869 + MIR SINE MIR 28 245 -17 325 291 25 63 chr6 128953914 128954072 -60325482 + L2 LINE L2 3162 3313 0 279 265 71 20 chr6 128954340 128954438 -60325116 - MIR SINE MIR -70 192 90 206 61 0 30 chr6 128954641 128954674 -60324880 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 1957 159 0 9 chr6 128954676 128954711 -60324843 - AluSx SINE Alu 0 312 278 1035 99 17 6 chr6 128954711 128954883 -60324671 + (TTCC)n Simple_repeat Simple_repeat 2 175 0 1957 159 0 9 chr6 128954883 128955162 -60324392 - AluSx SINE Alu -34 278 1 24 0 0 0 chr6 128955983 128956007 -60323547 + AT_rich Low_complexity Low_complexity 1 24 0 1687 181 0 26 chr6 128958363 128958666 -60320888 - AluJb SINE Alu -13 299 5 23 54 0 0 chr6 128958679 128958716 -60320838 + AT_rich Low_complexity Low_complexity 1 37 0 231 227 23 0 chr6 128959222 128959266 -60320288 - L2 LINE L2 -27 3245 3201 225 94 0 0 chr6 128959288 128959320 -60320234 + (T)n Simple_repeat Simple_repeat 1 32 0 255 61 0 0 chr6 128959948 128959981 -60319573 + (TG)n Simple_repeat Simple_repeat 2 34 0 754 136 45 0 chr6 128961693 128961825 -60317729 + L1MA5A LINE L1 6148 6285 -12 24 0 0 0 chr6 128962753 128962777 -60316777 + AT_rich Low_complexity Low_complexity 1 24 0 267 346 9 19 chr6 128962886 128962993 -60316561 + MIR SINE MIR 19 124 -84 302 163 58 43 chr6 128963044 128963138 -60316416 - MLT1I LTR MaLR -2 422 328 1671 244 120 48 chr6 128963385 128963902 -60315652 - MLT2B3 LTR ERVL 0 554 1 331 347 41 18 chr6 128965210 128965429 -60314125 + L2 LINE L2 1109 1332 -1982 339 348 71 23 chr6 128965485 128965564 -60313990 - L2 LINE L2 -1305 2009 1935 462 128 0 0 chr6 128965564 128965642 -60313912 - MADE1 DNA Mariner 0 80 3 339 348 71 23 chr6 128965642 128965913 -60313641 - L2 LINE L2 -1379 1935 1642 599 221 260 16 chr6 128966078 128966336 -60313218 - MER5C DNA MER1_type -3 321 1 213 368 32 24 chr6 128966336 128966458 -60313096 - L2 LINE L2 -908 2406 2284 21 36 0 0 chr6 128966661 128966689 -60312865 + AT_rich Low_complexity Low_complexity 1 28 0 231 222 0 0 chr6 128966694 128966748 -60312806 - L1MC4 LINE L1 -1341 6701 6648 406 153 25 17 chr6 128966750 128966868 -60312686 + (TA)n Simple_repeat Simple_repeat 2 120 0 649 224 62 52 chr6 128967222 128967414 -60312140 + MIR SINE MIR 2 195 -67 450 304 147 0 chr6 128967683 128967887 -60311667 + MIR SINE MIR 20 253 -9 1840 178 3 0 chr6 128967956 128968254 -60311300 - AluJb SINE Alu -13 299 1 22 0 0 0 chr6 128970212 128970234 -60309320 + AT_rich Low_complexity Low_complexity 1 22 0 1623 189 0 21 chr6 128970234 128970525 -60309029 - AluJo SINE Alu -27 285 1 1135 315 79 69 chr6 128970654 128971769 -60307785 + L2 LINE L2 2130 3223 -49 21 0 0 0 chr6 128972412 128972433 -60307121 + AT_rich Low_complexity Low_complexity 1 21 0 576 167 74 43 chr6 128973020 128973185 -60306369 - MLT1A1 LTR MaLR 0 374 204 1360 121 0 61 chr6 128973212 128973443 -60306111 - AluSg/x SINE Alu -15 297 81 775 186 21 7 chr6 128973443 128973588 -60305966 - MLT1A1 LTR MaLR -218 147 1 301 320 131 20 chr6 128973601 128973754 -60305800 - MIR3 SINE MIR -21 187 18 2180 120 10 0 chr6 128974301 128974609 -60304945 - AluSq SINE Alu 0 313 3 277 297 0 0 chr6 128974768 128974842 -60304712 - MIR3 SINE MIR -15 193 120 210 118 0 0 chr6 128975120 128975154 -60304400 + (TG)n Simple_repeat Simple_repeat 2 35 0 183 129 0 0 chr6 128975232 128975263 -60304291 + (TG)n Simple_repeat Simple_repeat 2 32 0 22 70 0 0 chr6 128976466 128976509 -60303045 + AT_rich Low_complexity Low_complexity 1 43 0 2118 119 10 3 chr6 128976862 128977165 -60302389 + AluSx SINE Alu 8 312 0 479 208 20 0 chr6 128977221 128977322 -60302232 - MER58 DNA MER1_type 0 2420 2318 325 209 15 0 chr6 128977334 128977401 -60302153 - MER58 DNA MER1_type -242 99 32 21 36 0 0 chr6 128977490 128977518 -60302036 + AT_rich Low_complexity Low_complexity 1 28 0 206 344 21 32 chr6 128979214 128979307 -60300247 - L3b LINE CR1 -66 1517 1426 204 185 31 15 chr6 128979404 128979469 -60300085 + GA-rich Low_complexity Low_complexity 5 70 0 1236 224 49 14 chr6 128979554 128979903 -60299651 + MLT1A1 LTR MaLR 5 365 0 443 273 87 25 chr6 128980090 128980251 -60299303 - LTR16A LTR ERVL -259 191 21 205 306 0 0 chr6 128982571 128982656 -60296898 + A-rich Low_complexity Low_complexity 1 85 0 1943 220 23 7 chr6 128982977 128983414 -60296140 + MLT1C LTR MaLR 1 444 -23 1815 180 3 6 chr6 128984598 128984909 -60294645 + AluJo SINE Alu 3 312 0 1629 124 131 0 chr6 128985319 128985586 -60293968 + AluSx SINE Alu 1 302 0 1412 180 56 39 chr6 128985743 128986099 -60293455 - L1MA6 LINE L1 0 6300 5939 629 275 33 11 chr6 128987068 128987250 -60292304 + L2 LINE L2 2378 2563 -751 474 206 83 134 chr6 128987239 128987516 -60292038 + L2 LINE L2 3051 3313 0 * 24 32 0 0 chr6 128987649 128987680 -60291874 + AT_rich Low_complexity Low_complexity 1 31 0 10120 157 38 9 chr6 128988331 128989732 -60289822 - Ricksha_c DNA DNA -1216 2038 577 1872 115 0 8 chr6 128989732 128990017 -60289537 + AluSx SINE Alu 35 317 0 10120 157 38 9 chr6 128990017 128990302 -60289252 - Ricksha_c DNA DNA -2677 577 302 1476 116 49 22 chr6 128990302 128990526 -60289028 - MER30 DNA MER1_type 0 230 1 818 166 26 28 chr6 128990526 128990728 -60288826 - Ricksha DNA DNA -1062 119 1 207 0 0 0 chr6 128991357 128991380 -60288174 + (T)n Simple_repeat Simple_repeat 1 23 0 993 57 29 0 chr6 128991598 128991738 -60287816 + L1PA4 LINE L1 6011 6154 -1 269 148 0 19 chr6 128991943 128991997 -60287557 + (TTCTCC)n Simple_repeat Simple_repeat 5 57 0 22 0 0 0 chr6 128993916 128993938 -60285616 + AT_rich Low_complexity Low_complexity 1 22 0 1985 115 4 0 chr6 128994195 128994511 -60285043 + AluSc SINE Alu 1 317 0 511 268 49 18 chr6 128994727 128994891 -60284663 + MER69A DNA AcHobo 8 176 -1 25 0 0 0 chr6 128995145 128995170 -60284384 + AT_rich Low_complexity Low_complexity 1 25 0 638 290 103 9 chr6 128998017 128998241 -60281313 + MIR SINE MIR 6 250 -12 22 56 0 0 chr6 128999435 128999471 -60280083 + AT_rich Low_complexity Low_complexity 1 36 0 2460 97 65 3 chr6 128999471 128999854 -60279700 - L1PB1 LINE L1 0 6151 5745 22 0 0 0 chr6 129001366 129001388 -60278166 + AT_rich Low_complexity Low_complexity 1 22 0 2576 234 65 14 chr6 129001388 129002321 -60277233 - L1ME1 LINE L1 -18 6148 5160 183 250 0 0 chr6 129003382 129003426 -60276128 + L3 LINE CR1 1528 1571 -6 1542 193 20 27 chr6 129004266 129004561 -60274993 - AluJo SINE Alu -14 298 6 335 252 84 45 chr6 129005085 129005240 -60274314 + L1MC3 LINE L1 5985 6145 -1640 3192 234 42 65 chr6 129005247 129006382 -60273172 + L1MC3 LINE L1 6259 7367 -418 931 211 157 47 chr6 129006382 129006681 -60272873 + MLT2C1 LTR ERVL 1 332 -65 1164 251 68 14 chr6 129006745 129007111 -60272443 + L1MD3 LINE L1 7605 7990 -5 1411 216 0 0 chr6 129007126 129007390 -60272164 - AluJb SINE Alu -13 299 36 260 182 61 0 chr6 129007436 129007502 -60272052 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 569 163 13 131 chr6 129007948 129008101 -60271453 + MER110A LTR ERV1 62 196 -272 227 183 127 0 chr6 129008154 129008225 -60271329 + L1MC5 LINE L1 7609 7688 -273 908 221 57 53 chr6 129008225 129008488 -60271066 + MER110A LTR ERV1 205 468 0 958 177 206 8 chr6 129008747 129008990 -60270564 + AluSg SINE Alu 2 292 -8 24 77 0 0 chr6 129009244 129009296 -60270258 + AT_rich Low_complexity Low_complexity 1 52 0 470 307 86 20 chr6 129009649 129009893 -60269661 - L2 LINE L2 -655 2659 2400 275 430 8 0 chr6 129009953 129010074 -60269480 - L2 LINE L2 0 3272 3151 223 149 64 21 chr6 129010116 129010163 -60269391 - MER5A DNA MER1_type -26 163 115 296 314 98 34 chr6 129010307 129010543 -60269011 - L2 LINE L2 -1212 2102 1852 349 313 36 0 chr6 129010860 129010972 -60268582 + L2 LINE L2 3157 3272 0 387 0 0 0 chr6 129011601 129011644 -60267910 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 842 104 9 0 chr6 129011644 129011759 -60267795 - AluJb SINE Alu -191 121 6 209 274 0 81 chr6 129011922 129011984 -60267570 - MER91 DNA MER1_type -1 195 139 194 297 176 16 chr6 129013637 129013819 -60265735 - L2 LINE L2 0 3313 3103 497 225 27 0 chr6 129014844 129014955 -60264599 - MER81 DNA DNA 0 114 1 246 318 0 0 chr6 129014955 129015018 -60264536 + L2 LINE L2 3250 3312 -1 276 257 0 69 chr6 129015044 129015145 -60264409 + MIR SINE MIR 104 197 -65 464 19 0 0 chr6 129015148 129015201 -60264353 - LTR7 LTR ERV1 -2 448 396 464 19 0 0 chr6 129015216 129015269 -60264285 - LTR7 LTR ERV1 -2 448 396 3473 55 0 7 chr6 129015284 129015735 -60263819 - LTR7 LTR ERV1 -2 448 1 2563 74 45 13 chr6 129015735 129016115 -60263439 - HERVH LTR ERV1 0 7713 7322 1343 119 20 0 chr6 129016113 129016314 -60263240 - HERVH LTR ERV1 -1894 5819 5615 * 207 0 0 0 chr6 129016314 129016337 -60263217 + (T)n Simple_repeat Simple_repeat 1 23 0 4266 140 8 1 chr6 129016354 129017012 -60262542 - HERVH LTR ERV1 -2564 5149 4488 3335 111 0 4 chr6 129017014 129017510 -60262044 - HERVH LTR ERV1 -3720 3993 3500 * 16298 99 108 73 chr6 129017509 129020690 -60258864 - HERVH LTR ERV1 -4423 3290 1 3408 67 0 7 chr6 129020692 129021143 -60258411 - LTR7 LTR ERV1 -2 448 1 278 268 0 0 chr6 129021706 129021762 -60257792 - MIR3 SINE MIR -18 190 135 239 211 0 28 chr6 129022400 129022471 -60257083 + (TA)n Simple_repeat Simple_repeat 1 69 0 264 365 52 0 chr6 129022905 129023001 -60256553 + MIR SINE MIR 48 148 -114 27 29 0 0 chr6 129023002 129023036 -60256518 + AT_rich Low_complexity Low_complexity 1 34 0 2186 143 75 39 chr6 129023449 129023888 -60255666 + MSTB2 LTR MaLR 3 457 0 12157 18 16 9 chr6 129026005 129027188 -60252366 - L1PA4 LINE L1 -3 6152 4950 2496 71 0 6 chr6 129027188 129027499 -60252055 - AluY SINE Alu -2 309 1 12157 18 16 9 chr6 129027499 129028539 -60251015 - L1PA4 LINE L1 -1205 4950 3918 893 289 40 0 chr6 129028953 129029181 -60250373 + MIR SINE MIR 23 259 -3 586 241 82 6 chr6 129029263 129029380 -60250174 + MIR SINE MIR 78 213 -49 527 62 41 0 chr6 129029380 129029477 -60250077 + (TA)n Simple_repeat Simple_repeat 2 102 0 586 241 82 6 chr6 129029477 129029529 -60250025 + MIR SINE MIR 213 260 -2 22 0 0 0 chr6 129030710 129030732 -60248822 + AT_rich Low_complexity Low_complexity 1 22 0 432 250 25 82 chr6 129030844 129030978 -60248576 + MER5A DNA MER1_type 2 142 -47 480 77 0 0 chr6 129030978 129031043 -60248511 + (TATG)n Simple_repeat Simple_repeat 2 66 0 2141 90 22 0 chr6 129031043 129031320 -60248234 - AluY SINE Alu -28 283 1 432 250 25 82 chr6 129031320 129031380 -60248174 + MER5A DNA MER1_type 140 186 -3 329 263 0 13 chr6 129031464 129031540 -60248014 + MER5B DNA MER1_type 1 75 -103 29 28 0 0 chr6 129033077 129033113 -60246441 + AT_rich Low_complexity Low_complexity 1 36 0 1964 140 14 0 chr6 129033113 129033399 -60246155 - AluSx SINE Alu -22 290 1 31 68 0 0 chr6 129034680 129034739 -60244815 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr6 129034818 129034839 -60244715 + AT_rich Low_complexity Low_complexity 1 21 0 182 312 158 55 chr6 129035287 129035540 -60244014 - L2 LINE L2 -98 3215 2937 314 350 39 0 chr6 129035575 129035678 -60243876 - L2 LINE L2 -8 3264 3158 654 285 62 21 chr6 129035905 129036147 -60243407 - MLT1K LTR MaLR 0 588 337 189 300 0 33 chr6 129036466 129036526 -60243028 + MIR SINE MIR 77 134 -74 1570 100 195 0 chr6 129036702 129036953 -60242601 + AluSp SINE Alu 1 300 -3 1232 284 19 6 chr6 129038058 129038424 -60241130 - LTR16B LTR ERVL -93 371 1 219 69 0 0 chr6 129039267 129039296 -60240258 + (TG)n Simple_repeat Simple_repeat 2 30 0 34 24 0 0 chr6 129040280 129040321 -60239233 + AT_rich Low_complexity Low_complexity 1 41 0 3084 153 41 18 chr6 129040357 129040497 -60239057 - L1MC1 LINE L1 -22 6311 6176 1799 162 55 27 chr6 129040497 129040862 -60238692 - THE1C LTR MaLR 0 375 1 3084 153 41 18 chr6 129040862 129041283 -60238271 - L1MC1 LINE L1 -157 6176 5737 28 99 0 0 chr6 129041975 129042066 -60237488 + AT_rich Low_complexity Low_complexity 1 91 0 609 195 24 0 chr6 129042286 129042409 -60237145 + MER94 DNA DNA 1 126 -8 236 352 11 11 chr6 129044629 129044717 -60234837 - L2 LINE L2 -7 3265 3178 276 336 22 37 chr6 129044799 129044933 -60234621 - L2 LINE L2 -199 3073 2942 * 316 356 23 0 chr6 129044918 129045050 -60234504 - L2 LINE L2 -584 2730 2596 352 285 39 63 chr6 129045441 129045648 -60233906 + MIR SINE MIR 7 208 -54 821 270 36 0 chr6 129048284 129048480 -60231074 - MIR SINE MIR -58 204 2 239 250 38 12 chr6 129048482 129048562 -60230992 + (TATATG)n Simple_repeat Simple_repeat 1 82 0 263 344 39 16 chr6 129048654 129048782 -60230772 + MLT2E LTR ERVL 32 162 -466 196 375 0 14 chr6 129049093 129049165 -60230389 + MIR SINE MIR 1 71 -191 766 291 36 0 chr6 129049674 129049870 -60229684 - MIR SINE MIR -58 204 2 239 250 38 12 chr6 129049872 129049952 -60229602 + (TATATG)n Simple_repeat Simple_repeat 1 82 0 479 264 30 121 chr6 129050484 129050749 -60228805 + MIR SINE MIR 1 241 -21 307 281 133 61 chr6 129050935 129051286 -60228268 - L1ME4a LINE L1 -16 6105 5698 1705 179 11 0 chr6 129051286 129051565 -60227989 + AluJo SINE Alu 1 282 -30 307 281 133 61 chr6 129051565 129051768 -60227786 - L1ME4a LINE L1 -423 5698 5511 22 0 0 0 chr6 129052575 129052597 -60226957 + AT_rich Low_complexity Low_complexity 1 22 0 225 317 19 48 chr6 129053206 129053310 -60226244 + LTR16A LTR ERVL 172 272 -178 488 299 142 25 chr6 129053463 129053764 -60225790 - MLT1H1 LTR MaLR -210 345 19 296 349 48 79 chr6 129054072 129054223 -60225331 + MIR SINE MIR 12 153 -109 2442 53 7 13 chr6 129054223 129054525 -60225029 - AluY SINE Alu -11 300 1 296 349 48 79 chr6 129054525 129054625 -60224929 + MIR SINE MIR 153 255 -7 322 338 37 10 chr6 129055574 129055707 -60223847 + MIR SINE MIR 25 142 -66 200 206 62 10 chr6 129055937 129056034 -60223520 + (TA)n Simple_repeat Simple_repeat 1 102 0 1634 183 3 14 chr6 129056057 129056352 -60223202 - AluSx SINE Alu -20 292 1 21 57 0 0 chr6 129057352 129057387 -60222167 + AT_rich Low_complexity Low_complexity 1 35 0 308 182 106 0 chr6 129057470 129057536 -60222018 + MER58B DNA MER1_type 266 338 -3 388 230 10 0 chr6 129057851 129057951 -60221603 - L1MA7 LINE L1 -12 6279 6179 2168 92 0 24 chr6 129058104 129058397 -60221157 - AluSc SINE Alu -6 303 18 506 198 126 48 chr6 129058786 129058953 -60220601 - MER63A DNA MER1_type 0 210 31 259 274 28 19 chr6 129060601 129060707 -60218847 + MER103 DNA DNA 60 166 0 269 310 35 0 chr6 129060804 129060920 -60218634 + L2 LINE L2 2221 2340 -974 269 256 188 34 chr6 129061036 129061153 -60218401 + L2 LINE L2 3123 3257 -15 2212 69 0 4 chr6 129061298 129061573 -60217981 + AluY SINE Alu 33 306 -5 620 196 71 0 chr6 129061591 129061703 -60217851 + FLAM_C SINE Alu 1 120 -23 210 37 0 0 chr6 129061703 129061730 -60217824 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 211 119 48 0 chr6 129063191 129063233 -60216321 + MIR SINE MIR 179 222 -40 589 39 0 0 chr6 129063371 129063449 -60216105 - L1MA4A LINE L1 -6 6297 6220 353 345 97 10 chr6 129064210 129064416 -60215138 + MIR SINE MIR 28 251 -11 398 315 36 80 chr6 129064505 129064756 -60214798 + L2 LINE L2 1995 2234 -1080 372 239 0 11 chr6 129064756 129064844 -60214710 + MLT1F1 LTR MaLR 1 87 -480 1169 211 38 28 chr6 129064856 129065163 -60214391 + MLT1F1 LTR MaLR 221 567 0 1215 253 63 60 chr6 129065163 129065281 -60214273 + L2 LINE L2 2230 2346 -968 2314 168 35 76 chr6 129065281 129065857 -60213697 + MLT2B3 LTR ERVL 3 554 0 1215 253 63 60 chr6 129065857 129066217 -60213337 + L2 LINE L2 2346 2709 -605 761 327 43 64 chr6 129066240 129066772 -60212782 + L1ME2 LINE L1 1 521 -5549 183 156 0 0 chr6 129067059 129067091 -60212463 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 653 256 102 14 chr6 129067092 129067456 -60212098 + L1ME2 LINE L1 544 939 -5131 1139 247 26 101 chr6 129067459 129068005 -60211549 + MLT1D LTR MaLR 1 505 0 722 303 7 7 chr6 129068038 129068322 -60211232 + L1ME2 LINE L1 984 1267 -4815 2460 253 52 17 chr6 129068334 129069436 -60210118 + L1ME2 LINE L1 4834 5975 -123 2518 54 0 0 chr6 129069436 129069734 -60209820 - AluSg SINE Alu -12 298 1 781 193 34 77 chr6 129071518 129071559 -60207995 - L1MB4 LINE L1 0 6180 6139 2245 101 3 0 chr6 129071559 129071855 -60207699 - AluSp SINE Alu -16 297 1 781 193 34 77 chr6 129071855 129072046 -60207508 - L1MB4 LINE L1 -41 6139 5958 417 265 52 29 chr6 129072771 129072881 -60206673 - L2 LINE L2 -12 3301 3186 495 155 0 86 chr6 129072881 129072997 -60206557 + L1PA10 LINE L1 6062 6167 -1 417 265 52 29 chr6 129072997 129073022 -60206532 - L2 LINE L2 -127 3186 3163 185 322 149 0 chr6 129073191 129073312 -60206242 - L2 LINE L2 -254 3059 2921 1966 147 0 23 chr6 129073531 129073830 -60205724 - AluSx SINE Alu -20 292 1 4887 44 0 0 chr6 129074839 129075430 -60204124 - L1PA5 LINE L1 -4 6150 5560 5649 45 6 0 chr6 129075430 129076305 -60203249 + L1PA5 LINE L1 4679 5556 -598 1104 171 9 19 chr6 129076415 129076626 -60202928 - L1PA15 LINE L1 -2 6163 5955 810 181 50 22 chr6 129077229 129077411 -60202143 - MLT1A2 LTR MaLR -13 361 175 1384 47 0 0 chr6 129077438 129077608 -60201946 - L1PA5 LINE L1 0 6154 5985 1235 29 0 0 chr6 129077610 129077750 -60201804 - L1PA5 LINE L1 -487 5667 5528 412 263 97 0 chr6 129077753 129077867 -60201687 - MLT1A2 LTR MaLR -216 149 25 6386 224 49 42 chr6 129077873 129079109 -60200445 - MLT1A1-int LTR MaLR -134 1601 350 2182 102 0 16 chr6 129079109 129079462 -60200092 - AluSx SINE Alu 0 312 1 6386 224 49 42 chr6 129079462 129079793 -60199761 - MLT1A1-int LTR MaLR -1385 350 23 24 32 0 0 chr6 129080201 129080232 -60199322 + AT_rich Low_complexity Low_complexity 1 31 0 34 65 0 0 chr6 129080304 129080366 -60199188 + AT_rich Low_complexity Low_complexity 1 62 0 2274 68 30 14 chr6 129080445 129080741 -60198813 - AluY SINE Alu -10 301 1 30 27 0 0 chr6 129081127 129081164 -60198390 + AT_rich Low_complexity Low_complexity 1 37 0 304 365 88 10 chr6 129082944 129083136 -60196418 + L2 LINE L2 2562 2768 -546 268 336 67 0 chr6 129083198 129083302 -60196252 + L2 LINE L2 3162 3272 0 572 221 76 19 chr6 129083759 129083917 -60195637 + MIR SINE MIR 80 246 -16 32 43 0 0 chr6 129084044 129084090 -60195464 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr6 129084132 129084156 -60195398 + AT_rich Low_complexity Low_complexity 1 24 0 349 313 69 19 chr6 129084953 129085113 -60194441 - MIR3 SINE MIR -22 186 19 2401 74 7 7 chr6 129086434 129086743 -60192811 + AluY SINE Alu 1 309 -2 270 136 0 0 chr6 129087912 129087956 -60191598 + (TA)n Simple_repeat Simple_repeat 1 44 0 1616 199 16 30 chr6 129088471 129088837 -60190717 - MLT1A1 LTR MaLR -4 361 1 2217 221 20 6 chr6 129088837 129089313 -60190241 - MLT1A1-int LTR MaLR 0 1735 1219 364 263 20 0 chr6 129089438 129089537 -60190017 - MLT1A1-int LTR MaLR -958 777 677 1749 228 13 37 chr6 129089659 129090120 -60189434 - MLT1A1-int LTR MaLR -639 732 283 1637 211 40 8 chr6 129090120 129090471 -60189083 + MLT1A1 LTR MaLR 1 362 -3 698 195 32 37 chr6 129090475 129090674 -60188880 - MLT1A1-int LTR MaLR -1452 199 12 2150 202 28 9 chr6 129090687 129091189 -60188365 + MER44D DNA MER2_type 6 604 -1 883 244 28 61 chr6 129091200 129091626 -60187928 - MLT1A2 LTR MaLR 0 374 1 851 131 35 0 chr6 129092415 129092560 -60186994 - L1MA2 LINE L1 0 6304 6155 3317 82 16 0 chr6 129092566 129093017 -60186537 + THE1-int LTR MaLR 96 553 -1027 2580 141 0 8 chr6 129093014 129093396 -60186158 + THE1-int LTR MaLR 762 1140 -440 * 1431 128 8 34 chr6 129093396 129093630 -60185924 + THE1B LTR MaLR 132 359 -5 392 320 39 0 chr6 129093631 129093759 -60185795 + MIR SINE MIR 76 208 -54 1090 154 11 15 chr6 129093793 129094060 -60185494 + MLT1B LTR MaLR 35 390 0 1114 236 63 109 chr6 129094169 129094610 -60184944 - MLT1F1 LTR MaLR 0 567 147 7436 92 7 20 chr6 129094720 129095792 -60183762 + MER11C LTR ERVK 1 1057 -14 249 292 0 28 chr6 129095830 129095902 -60183652 - MLT1F1 LTR MaLR -511 82 13 204 256 0 0 chr6 129097590 129097629 -60181925 - L2 LINE L2 -97 3175 3137 13348 64 14 0 chr6 129099023 129101531 -60178023 + L1PA6 LINE L1 3627 6150 -4 23 33 0 0 chr6 129102097 129102127 -60177427 + AT_rich Low_complexity Low_complexity 1 30 0 5949 98 21 15 chr6 129102260 129103456 -60176098 + L1PA10 LINE L1 4936 6149 -19 28 0 0 0 chr6 129103457 129103485 -60176069 + AT_rich Low_complexity Low_complexity 1 28 0 273 29 0 0 chr6 129104829 129104863 -60174691 + (TC)n Simple_repeat Simple_repeat 1 34 0 * 459 0 0 0 chr6 129104862 129104913 -60174641 + (CA)n Simple_repeat Simple_repeat 1 51 0 288 226 101 46 chr6 129105270 129105439 -60174115 + MLT1J2 LTR MaLR 131 345 -105 410 296 24 8 chr6 129105924 129106049 -60173505 - MER94 DNA DNA -7 127 1 195 42 0 0 chr6 129106314 129106338 -60173216 + (CA)n Simple_repeat Simple_repeat 1 24 0 350 325 55 31 chr6 129106355 129106518 -60173036 + MIR SINE MIR 50 216 -46 421 311 33 0 chr6 129107185 129107336 -60172218 - MIR SINE MIR -32 230 75 796 316 20 4 chr6 129107340 129107590 -60171964 - MIR SINE MIR -3 259 6 666 314 14 5 chr6 129108078 129108285 -60171269 + MIR SINE MIR 2 210 -52 30 27 0 0 chr6 129109036 129109073 -60170481 + AT_rich Low_complexity Low_complexity 1 37 0 1107 158 0 6 chr6 129109856 129110027 -60169527 - AluSg/x SINE Alu -9 303 134 2025 122 10 0 chr6 129110027 129110322 -60169232 - AluSx SINE Alu -14 298 1 1872 133 25 0 chr6 129111180 129111459 -60168095 + AluSx SINE Alu 1 286 -26 387 0 0 0 chr6 129111461 129111504 -60168050 + (TG)n Simple_repeat Simple_repeat 2 44 0 208 250 92 50 chr6 129112135 129112255 -60167299 - MIR SINE MIR -26 236 112 1527 103 0 5 chr6 129113599 129113812 -60165742 + AluY SINE Alu 100 311 0 3167 32 0 0 chr6 129115808 129116178 -60163376 - L1PA3 LINE L1 -13 6142 5773 32 0 0 0 chr6 129116738 129116770 -60162784 + AT_rich Low_complexity Low_complexity 1 32 0 28 48 0 0 chr6 129116880 129116922 -60162632 + AT_rich Low_complexity Low_complexity 1 42 0 206 170 100 0 chr6 129117146 129117246 -60162308 + (TA)n Simple_repeat Simple_repeat 2 111 0 2705 96 19 0 chr6 129118484 129118850 -60160704 - THE1C LTR MaLR -2 373 1 180 77 0 0 chr6 129119233 129119259 -60160295 + (A)n Simple_repeat Simple_repeat 1 26 0 235 314 63 85 chr6 129119261 129119484 -60160070 + MIR SINE MIR 18 235 -27 498 291 42 0 chr6 129119485 129119650 -60159904 - LTR16C LTR ERVL -3 488 317 300 293 13 0 chr6 129119658 129119733 -60159821 - MIR SINE MIR -134 128 53 523 243 64 25 chr6 129120280 129120482 -60159072 - MIR SINE MIR 0 262 53 606 155 10 1 chr6 129121159 129121269 -60158285 + L1MD1 LINE L1 5623 5714 -645 1953 218 35 10 chr6 129121360 129121872 -60157682 + L1MD1 LINE L1 5728 6242 0 670 260 46 23 chr6 129122529 129122748 -60156806 + MIR SINE MIR 31 254 -8 21 36 0 0 chr6 129122755 129122783 -60156771 + AT_rich Low_complexity Low_complexity 1 28 0 189 107 0 0 chr6 129123010 129123038 -60156516 + (TG)n Simple_repeat Simple_repeat 2 29 0 1444 222 91 3 chr6 129123170 129123531 -60156023 - MSTD LTR MaLR -3 393 1 1770 165 16 23 chr6 129124207 129124510 -60155044 - AluJb SINE Alu -11 301 1 2279 115 5 39 chr6 129124793 129125175 -60154379 - L1PB3 LINE L1 -78 6076 5708 6607 135 37 23 chr6 129125453 129126665 -60152889 + Tigger3b DNA MER2_type 2 1230 -1 354 270 34 34 chr6 129126709 129126857 -60152697 + MER5A DNA MER1_type 41 188 -1 592 338 43 0 chr6 129127129 129127339 -60152215 + MIR SINE MIR 15 233 -29 187 237 86 43 chr6 129128814 129128907 -60150647 - MER5B DNA MER1_type 0 178 82 343 305 51 34 chr6 129129067 129129359 -60150195 + L1ME LINE L1 818 1114 -5091 352 221 18 0 chr6 129129482 129129707 -60149847 + (TA)n Simple_repeat Simple_repeat 1 229 0 685 288 74 24 chr6 129129740 129130118 -60149436 + L1ME LINE L1 1274 1670 -4726 857 121 0 0 chr6 129130144 129130276 -60149278 - L1PA13 LINE L1 -1 6162 6031 28 71 0 0 chr6 129130378 129130434 -60149120 + AT_rich Low_complexity Low_complexity 1 56 0 478 259 107 62 chr6 129130441 129130684 -60148870 + L1ME LINE L1 2120 2373 -4023 331 197 26 60 chr6 129131492 129131507 -60148047 + L1ME LINE L1 2387 2401 -3814 2296 87 3 19 chr6 129131507 129131819 -60147735 + AluSq SINE Alu 1 307 -6 331 197 26 60 chr6 129131819 129131920 -60147634 + L1ME LINE L1 2401 2499 -3716 2128 109 17 3 chr6 129132117 129132411 -60147143 + AluSx SINE Alu 2 299 -13 435 267 62 14 chr6 129132593 129132739 -60146815 + MIR SINE MIR 60 212 -50 302 333 15 9 chr6 129133868 129134018 -60145536 + MLT2F LTR ERVL 15 166 -462 556 304 143 9 chr6 129134184 129134401 -60145153 + MLT2E LTR ERVL 383 628 0 335 329 15 29 chr6 129134462 129134599 -60144955 - MER115 DNA AcHobo 0 693 559 1446 202 34 84 chr6 129134600 129134804 -60144750 - MLT1A2 LTR MaLR -11 363 185 2196 122 0 0 chr6 129134804 129135107 -60144447 - AluSg SINE Alu -2 308 6 1446 202 34 84 chr6 129135107 129135284 -60144270 - MLT1A2 LTR MaLR -189 185 1 1169 196 42 0 chr6 129135361 129135646 -60143908 - Zaphod DNA AcHobo -433 3598 3302 393 267 0 0 chr6 129135710 129135811 -60143743 - Zaphod DNA AcHobo -3409 622 522 305 268 85 17 chr6 129136242 129136530 -60143024 + L1M4 LINE L1 4031 4342 -1804 485 297 44 5 chr6 129136531 129136808 -60142746 - MLT1H LTR MaLR 0 549 239 705 263 106 38 chr6 129136856 129137092 -60142462 - Zaphod DNA AcHobo -3772 259 8 2362 66 14 0 chr6 129137386 129137674 -60141880 - AluY SINE Alu -19 292 1 690 260 90 31 chr6 129140946 129141169 -60138385 - MIR SINE MIR -26 236 1 431 145 0 0 chr6 129143204 129143266 -60136288 - MER8 DNA MER2_type 0 239 178 1636 112 89 4 chr6 129143273 129143542 -60136012 + Tigger2 DNA MER2_type 2280 2571 -147 2017 83 7 4 chr6 129143551 129143828 -60135726 - L1PB1 LINE L1 0 6151 5874 9029 210 24 2 chr6 129143829 129145992 -60133562 - L1 LINE L1 -1746 4400 2190 2477 79 89 8 chr6 129145992 129146361 -60133193 + MLT2A1 LTR ERVL 1 399 -45 9235 131 56 10 chr6 129146628 129149230 -60130324 - L1PBa LINE L1 -3953 2910 1 854 176 0 34 chr6 129149242 129149390 -60130164 + Tigger2 DNA MER2_type 2565 2707 -11 1383 295 67 9 chr6 129149674 129150122 -60129432 + L2 LINE L2 1184 1657 -1657 1496 267 83 115 chr6 129150122 129150544 -60129010 + L2 LINE L2 1955 2389 -924 375 94 0 0 chr6 129150544 129150597 -60128957 - MER53 DNA DNA -136 53 1 1496 267 83 115 chr6 129150597 129151519 -60128035 + L2 LINE L2 2389 3312 -1 30 45 0 0 chr6 129153927 129153971 -60125583 + AT_rich Low_complexity Low_complexity 1 44 0 946 169 0 0 chr6 129154050 129154198 -60125356 + FAM SINE Alu 28 175 -10 181 204 68 23 chr6 129154231 129154275 -60125279 + MIR SINE MIR 163 208 -54 1641 160 21 3 chr6 129155813 129156101 -60123453 - L1PB4 LINE L1 -1 6155 5863 250 189 22 89 chr6 129156216 129156306 -60123248 - L2 LINE L2 0 3313 3230 1831 145 178 11 chr6 129156855 129157220 -60122334 - MSTA LTR MaLR 0 428 3 430 250 33 113 chr6 129157264 129157504 -60122050 + MER102a DNA MER1_type 103 323 -7 305 217 0 0 chr6 129157963 129158023 -60121531 + L2 LINE L2 3254 3313 0 1702 155 44 24 chr6 129158129 129158425 -60121129 - AluSx SINE Alu -10 302 1 3465 169 30 29 chr6 129160056 129160713 -60118841 + L1MB3 LINE L1 5482 6142 -41 2259 101 3 0 chr6 129160713 129161009 -60118545 + AluSp SINE Alu 1 297 -16 3465 169 30 29 chr6 129161009 129161050 -60118504 + L1MB3 LINE L1 6142 6181 -2 2453 86 0 0 chr6 129162834 129163138 -60116416 + AluY SINE Alu 1 304 -7 5397 157 23 32 chr6 129164629 129165710 -60113844 - MER11C LTR ERVK 0 1071 1 231 293 61 61 chr6 129166196 129166360 -60113194 - MIR3 SINE MIR -10 198 35 1877 255 133 27 chr6 129167249 129167635 -60111919 - Charlie2 DNA MER1_type -1 2861 2518 249 33 0 0 chr6 129167635 129167665 -60111889 + (CA)n Simple_repeat Simple_repeat 1 30 0 1877 255 133 27 chr6 129167665 129168177 -60111377 - Charlie2 DNA MER1_type -344 2518 1867 935 307 62 10 chr6 129168192 129168498 -60111056 - Charlie2 DNA MER1_type -2540 322 1 2130 128 7 0 chr6 129168774 129169080 -60110474 + AluSc SINE Alu 1 308 -1 1067 120 11 0 chr6 129169088 129169263 -60110291 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 410 368 120 31 chr6 129169722 129170239 -60109315 - L2 LINE L2 -346 2968 2406 * 461 345 45 5 chr6 129170218 129170441 -60109113 - MIR SINE MIR -1 261 30 185 289 155 41 chr6 129170612 129170709 -60108845 - MIR3 SINE MIR -99 109 2 288 0 0 0 chr6 129170930 129170962 -60108592 + (CA)n Simple_repeat Simple_repeat 1 32 0 544 309 32 60 chr6 129171075 129171324 -60108230 + L3b LINE CR1 1330 1571 -12 32 75 0 0 chr6 129171786 129171853 -60107701 + AT_rich Low_complexity Low_complexity 1 67 0 351 65 0 0 chr6 129172260 129172306 -60107248 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 277 293 57 19 chr6 129172481 129172587 -60106967 + MLT2E LTR ERVL 32 141 -487 198 0 0 0 chr6 129173210 129173232 -60106322 + (TA)n Simple_repeat Simple_repeat 1 22 0 8370 84 5 0 chr6 129173232 129175142 -60104412 - L1PA7 LINE L1 -19 6135 4221 493 326 90 66 chr6 129175924 129176272 -60103282 - L2 LINE L2 -9 3304 2939 2391 77 3 0 chr6 129176272 129176570 -60102984 + AluY SINE Alu 1 299 -12 493 326 90 66 chr6 129176570 129176709 -60102845 - L2 LINE L2 -374 2939 2805 557 277 19 6 chr6 129176763 129176922 -60102632 - L2 LINE L2 -523 2791 2631 428 315 78 22 chr6 129176926 129177158 -60102396 - L2 LINE L2 -919 2395 2151 252 291 181 16 chr6 129178329 129178456 -60101098 + MIR SINE MIR 4 151 -111 324 241 163 14 chr6 129179231 129179372 -60100182 - MIR SINE MIR 0 262 101 508 261 27 55 chr6 129179773 129180030 -60099524 + L1ME3A LINE L1 5689 5938 -232 24 32 0 0 chr6 129180241 129180272 -60099282 + AT_rich Low_complexity Low_complexity 1 31 0 281 284 108 40 chr6 129180333 129180481 -60099073 - MIR SINE MIR -66 196 39 320 336 91 0 chr6 129183562 129183705 -60095849 + MIR SINE MIR 2 157 -105 328 259 0 12 chr6 129184814 129184895 -60094659 + MLT1L LTR MaLR 1 80 -535 685 304 80 0 chr6 129185451 129185675 -60093879 - MIR SINE MIR -13 249 8 340 254 177 11 chr6 129187739 129187920 -60091634 - MLT1K LTR MaLR 0 588 378 840 137 155 0 chr6 129188155 129188316 -60091238 + MER5A DNA MER1_type 4 189 0 1155 171 81 5 chr6 129189815 129190037 -60089517 - Tigger5 DNA MER2_type -5 2318 2080 5501 161 14 41 chr6 129190138 129191771 -60087783 + L1MA4A LINE L1 4696 6292 -11 376 272 107 12 chr6 129191792 129191961 -60087593 + MIR SINE MIR 68 252 -10 261 359 22 0 chr6 129192034 129192126 -60087428 - L2 LINE L2 -240 3032 2939 603 306 48 5 chr6 129192127 129192313 -60087241 + LTR33 LTR ERVL 3 196 -325 465 286 18 18 chr6 129192369 129192540 -60087014 + LTR33 LTR ERVL 344 514 -7 1315 265 36 0 chr6 129192850 129193235 -60086319 - L1M4 LINE L1 -2134 4012 3614 189 0 0 0 chr6 129193424 129193445 -60086109 + (GA)n Simple_repeat Simple_repeat 2 22 0 222 171 0 0 chr6 129193465 129193506 -60086048 + (TA)n Simple_repeat Simple_repeat 2 42 0 8595 155 17 12 chr6 129193506 129196365 -60083189 - L1PA14 LINE L1 -4 6157 3291 305 250 16 55 chr6 129196411 129196539 -60083015 + L1M4 LINE L1 3073 3195 -2951 293 237 0 13 chr6 129198911 129198987 -60080567 + MER116 DNA Mariner 6 80 0 272 329 0 0 chr6 129198987 129199069 -60080485 + MIR3 SINE MIR 79 160 -48 815 217 160 44 chr6 129199798 129199967 -60079587 - L1MC4 LINE L1 -10 8032 7884 2196 135 114 5 chr6 129199967 129200353 -60079201 + MSTA LTR MaLR 1 428 0 815 217 160 44 chr6 129200353 129200480 -60079074 - L1MC4 LINE L1 -158 7884 7773 1974 134 3 0 chr6 129200480 129200784 -60078770 - AluSx SINE Alu 0 305 1 815 217 160 44 chr6 129200784 129200872 -60078682 - L1MC4 LINE L1 -269 7773 7601 184 375 161 18 chr6 129200979 129201091 -60078463 + MIR SINE MIR 16 143 -65 346 240 0 87 chr6 129201349 129201453 -60078101 - MER20 DNA MER1_type -4 215 121 370 179 21 0 chr6 129201678 129201773 -60077781 + GA-rich Low_complexity Low_complexity 4 100 0 718 52 0 0 chr6 129202272 129202368 -60077186 - L1PA8 LINE L1 0 6172 6077 945 205 57 35 chr6 129202779 129203114 -60076440 + MSTD LTR MaLR 3 394 -2 285 343 203 5 chr6 129203414 129203621 -60075933 + MIR SINE MIR 15 262 0 244 227 0 0 chr6 129203954 129203998 -60075556 + L2 LINE L2 3216 3259 -13 22 80 0 0 chr6 129204559 129204609 -60074945 + AT_rich Low_complexity Low_complexity 1 50 0 807 276 50 22 chr6 129204621 129204983 -60074571 + L1PBa LINE L1 1 372 -6491 292 169 0 0 chr6 129205063 129205122 -60074432 + L1PB1 LINE L1 6090 6148 -3 198 378 67 0 chr6 129205805 129205895 -60073659 - MIR SINE MIR -55 153 58 260 250 16 0 chr6 129206577 129206641 -60072913 + GA-rich Low_complexity Low_complexity 2 66 0 731 227 73 131 chr6 129207116 129207569 -60071985 + LTR28 LTR ERV1 1 491 -10 2007 149 7 0 chr6 129207904 129208200 -60071354 + AluSx SINE Alu 2 299 -13 207 0 0 0 chr6 129208289 129208312 -60071242 + (CA)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr6 129208916 129208938 -60070616 + AT_rich Low_complexity Low_complexity 1 22 0 2635 86 13 18 chr6 129208967 129209351 -60070203 - L1PA14 LINE L1 0 6161 5780 270 230 14 14 chr6 129209351 129209425 -60070129 + (TA)n Simple_repeat Simple_repeat 1 74 0 184 219 0 0 chr6 129209483 129209524 -60070030 + L2 LINE L2 3270 3310 -3 21 0 0 0 chr6 129210139 129210160 -60069394 + AT_rich Low_complexity Low_complexity 1 21 0 397 264 15 90 chr6 129211501 129211702 -60067852 + L2 LINE L2 3091 3276 -37 527 264 0 0 chr6 129212305 129212415 -60067139 - MER81 DNA DNA 0 114 5 190 236 0 73 chr6 129213467 129213522 -60066032 - MIR SINE MIR -131 131 81 251 263 26 0 chr6 129213688 129213764 -60065790 + MIR SINE MIR 64 141 -67 342 0 0 0 chr6 129213764 129213802 -60065752 + (A)n Simple_repeat Simple_repeat 1 38 0 279 0 0 0 chr6 129214737 129214768 -60064786 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1351 214 22 0 chr6 129214770 129215046 -60064508 - AluJo SINE Alu -30 282 1 441 342 78 65 chr6 129215491 129216363 -60063191 + L2 LINE L2 2360 3255 -17 983 220 9 23 chr6 129217559 129217777 -60061777 - MER20 DNA MER1_type -4 215 1 490 238 49 159 chr6 129217976 129218071 -60061483 + L2 LINE L2 1525 1629 -1685 2155 97 31 0 chr6 129218071 129218359 -60061195 - AluSq SINE Alu -16 297 1 490 238 49 159 chr6 129218359 129218421 -60061133 + L2 LINE L2 1629 1696 -1618 2036 139 33 0 chr6 129218421 129218787 -60060767 + L1MA8 LINE L1 5912 6289 -2 490 238 49 159 chr6 129218787 129218998 -60060556 + L2 LINE L2 1696 1853 -1461 6058 101 81 116 chr6 129219344 129220921 -60058633 + pTR5 LTR ERV1 743 2438 0 668 178 55 69 chr6 129222474 129222676 -60056878 - MER3 DNA MER1_type 0 209 11 511 269 21 14 chr6 129223022 129223167 -60056387 + MER3 DNA MER1_type 8 153 -56 1716 212 151 96 chr6 129223263 129223611 -60055943 + MLT1E1 LTR MaLR 19 415 -239 2483 71 0 0 chr6 129223611 129223922 -60055632 + AluY SINE Alu 1 311 0 1716 212 151 96 chr6 129223922 129224176 -60055378 + MLT1E1 LTR MaLR 415 654 0 197 302 48 0 chr6 129225814 129225877 -60053677 - L2 LINE L2 -4 3309 3244 569 184 18 0 chr6 129225899 129226013 -60053541 + L1MB1 LINE L1 6049 6164 -4 14126 203 50 7 chr6 129226145 129232189 -60047365 + L1P5 LINE L1 7 6483 -384 716 262 34 37 chr6 129232326 129232677 -60046877 + L1PB1 LINE L1 5442 5791 -360 226 246 0 0 chr6 129232649 129232706 -60046848 - L1MC4 LINE L1 -1328 6714 6658 * 204 83 62 0 chr6 129232738 129232786 -60046768 + (TA)n Simple_repeat Simple_repeat 1 51 0 1990 161 11 8 chr6 129232786 129233153 -60046401 + L1PB1 LINE L1 5782 6149 -2 456 332 78 36 chr6 129233302 129233663 -60045891 - L2 LINE L2 -201 3071 2698 1034 159 9 69 chr6 129233868 129234100 -60045454 - MER20 DNA MER1_type -1 218 1 1009 91 0 42 chr6 129234525 129234668 -60044886 - AluSq/x SINE Alu -176 137 1 186 337 89 0 chr6 129234668 129234769 -60044785 - MIR3 SINE MIR -15 193 84 336 127 0 0 chr6 129235651 129235706 -60043848 + (TG)n Simple_repeat Simple_repeat 1 55 0 326 173 263 30 chr6 129237104 129237237 -60042317 + L1ME LINE L1 5660 5823 -298 439 282 47 66 chr6 129240650 129240863 -60038691 - MIR SINE MIR -40 222 14 728 322 23 16 chr6 129241166 129241424 -60038130 - MIR SINE MIR -1 261 2 1196 198 9 0 chr6 129241570 129241797 -60037757 + MLT2B1 LTR ERVL 1 229 -291 2145 158 60 32 chr6 129241820 129242330 -60037224 + MLT2A2 LTR ERVL 4 548 -6 420 71 0 0 chr6 129242330 129242386 -60037168 + (TC)n Simple_repeat Simple_repeat 2 57 0 846 166 162 60 chr6 129242386 129242621 -60036933 + MLT2B1 LTR ERVL 218 476 -44 253 130 43 0 chr6 129242666 129242712 -60036842 - MLT2B1 LTR ERVL -40 480 433 941 269 58 38 chr6 129243825 129244171 -60035383 + MLT1G LTR MaLR 138 490 -100 243 0 0 0 chr6 129244384 129244411 -60035143 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 347 0 40 chr6 129244593 129244668 -60034886 - L2 LINE L2 -12 3301 3230 2187 159 8 13 chr6 129244863 129245254 -60034300 + MLT1B LTR MaLR 2 390 0 432 0 0 0 chr6 129246132 129246180 -60033374 + (TG)n Simple_repeat Simple_repeat 2 49 0 1212 253 40 52 chr6 129246459 129246862 -60032692 - L2 LINE L2 -60 3253 2856 2824 19 0 0 chr6 129246867 129247178 -60032376 + AluYb8 SINE Alu 1 311 -7 283 363 101 36 chr6 129247203 129247619 -60031935 - L2 LINE L2 0 3313 2871 273 365 107 56 chr6 129247677 129248442 -60031112 + L2 LINE L2 2206 3012 -260 230 140 0 20 chr6 129248574 129248624 -60030930 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 25 0 0 0 chr6 129249646 129249671 -60029883 + AT_rich Low_complexity Low_complexity 1 25 0 318 279 125 0 chr6 129249780 129249916 -60029638 + MIR SINE MIR 110 262 0 26 50 0 0 chr6 129249950 129249990 -60029564 + AT_rich Low_complexity Low_complexity 1 40 0 5874 195 2 4 chr6 129250204 129251406 -60028148 - L1 LINE L1 -1228 4918 3720 8977 176 91 34 chr6 129251624 129253716 -60025838 + L1MC1 LINE L1 32 2241 -4185 449 180 0 10 chr6 129253718 129253818 -60025736 + (TATATG)n Simple_repeat Simple_repeat 4 102 0 409 161 37 0 chr6 129253992 129254073 -60025481 + L1MC1 LINE L1 2353 2436 -3990 3460 247 81 9 chr6 129254075 129255521 -60024033 + L1MC1 LINE L1 3279 4851 -1575 1643 180 135 14 chr6 129255522 129255877 -60023677 + MSTA LTR MaLR 31 428 0 5494 201 19 2 chr6 129255880 129257107 -60022447 + L1MC1 LINE L1 5360 6607 -6 332 175 48 78 chr6 129257129 129257232 -60022322 - MER112 DNA MER1_type -125 135 36 222 145 0 48 chr6 129257263 129257325 -60022229 + (TTTCC)n Simple_repeat Simple_repeat 3 61 0 22 35 0 0 chr6 129257659 129257688 -60021866 + AT_rich Low_complexity Low_complexity 1 29 0 395 324 62 100 chr6 129259426 129259987 -60019567 - L2 LINE L2 -1 3271 2726 283 368 18 0 chr6 129260403 129260517 -60019037 + L2 LINE L2 3156 3271 -1 1166 141 6 6 chr6 129260536 129260849 -60018705 - L1PA16 LINE L1 -4 6162 5651 194 290 0 32 chr6 129261445 129261507 -60018047 + L2 LINE L2 2581 2640 -674 1210 218 31 98 chr6 129261869 129262287 -60017267 + MLT1B LTR MaLR 1 390 0 2516 103 11 0 chr6 129262757 129263108 -60016446 - THE1A LTR MaLR 0 355 1 10663 93 7 78 chr6 129263108 129264807 -60014747 - THE1A-int LTR MaLR 0 1580 2 2688 93 3 0 chr6 129264808 129265162 -60014392 - THE1A LTR MaLR 0 355 1 310 21 21 21 chr6 129265166 129265214 -60014340 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 5768 92 44 10 chr6 129265215 129266118 -60013436 - L1PA8 LINE L1 -24 6148 5212 577 258 68 21 chr6 129266317 129266507 -60013047 - MIR SINE MIR -24 238 40 665 271 73 118 chr6 129266723 129267174 -60012380 + L2 LINE L2 2883 3313 0 26 30 0 0 chr6 129267287 129267320 -60012234 + AT_rich Low_complexity Low_complexity 1 33 0 427 299 39 53 chr6 129267852 129268210 -60011344 + L1ME4a LINE L1 5531 5883 -238 276 53 0 0 chr6 129268338 129268376 -60011178 + (TC)n Simple_repeat Simple_repeat 1 38 0 333 0 0 0 chr6 129268376 129268413 -60011141 + (TA)n Simple_repeat Simple_repeat 1 37 0 2291 75 10 3 chr6 129268415 129268707 -60010847 - AluY SINE Alu -17 294 1 23 54 0 0 chr6 129268940 129268977 -60010577 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr6 129269699 129269740 -60009814 + AT_rich Low_complexity Low_complexity 1 41 0 391 222 63 40 chr6 129270034 129270160 -60009394 - MER96B DNA MER1_type? -178 239 111 423 143 154 0 chr6 129270230 129270321 -60009233 - L1MA8 LINE L1 -59 6232 6128 436 237 82 0 chr6 129270328 129270425 -60009129 + MER96B DNA MER1_type? 312 416 -1 1814 338 49 25 chr6 129270978 129272091 -60007463 - ERVL LTR ERVL -393 5371 4232 509 380 26 16 chr6 129272221 129272630 -60006924 - LTR16B LTR ERVL -78 386 1 361 305 91 25 chr6 129272917 129273114 -60006440 + MIR SINE MIR 53 262 0 1395 215 29 19 chr6 129274199 129274543 -60005011 + MSTD LTR MaLR 1 396 0 454 287 0 0 chr6 129274553 129274647 -60004907 - MER81 DNA DNA -19 95 2 231 356 0 33 chr6 129274647 129274737 -60004817 + MIR SINE MIR 9 95 -167 1511 225 63 9 chr6 129274737 129275084 -60004470 - MSTD LTR MaLR 0 396 31 327 314 35 52 chr6 129275098 129275270 -60004284 + MIR SINE MIR 93 261 -1 224 316 170 19 chr6 129275520 129275726 -60003828 + MIR SINE MIR 12 248 -14 592 321 4 66 chr6 129275734 129275953 -60003601 - MIR SINE MIR 0 262 62 1628 110 11 4 chr6 129275953 129276216 -60003338 + L1MA3 LINE L1 6041 6305 0 592 321 4 66 chr6 129276216 129276270 -60003284 - MIR SINE MIR -200 62 6 1889 157 45 34 chr6 129276520 129276877 -60002677 - THE1B LTR MaLR -2 362 2 497 253 154 41 chr6 129277186 129277478 -60002076 + L1MCc LINE L1 72 396 -6027 429 70 0 0 chr6 129277789 129277846 -60001708 + (GA)n Simple_repeat Simple_repeat 2 58 0 1267 152 68 170 chr6 129278067 129278554 -60001000 - LTR23 LTR ERV1 0 437 1 30 45 0 0 chr6 129278737 129278781 -60000773 + AT_rich Low_complexity Low_complexity 1 44 0 1206 249 128 28 chr6 129278816 129279386 -60000168 + L1ME2 LINE L1 4387 5028 -1118 1883 169 0 25 chr6 129279386 129279526 -60000028 + AluJb SINE Alu 1 143 -169 2275 75 4 0 chr6 129279526 129279839 -59999715 + AluY SINE Alu 3 316 0 1883 169 0 25 chr6 129279839 129280017 -59999537 + AluJb SINE Alu 143 312 0 1206 249 128 28 chr6 129280017 129280080 -59999474 + L1ME2 LINE L1 5028 5083 -1063 901 228 94 18 chr6 129280081 129280107 -59999447 - MLT2D LTR ERVL -7 407 384 423 0 0 0 chr6 129280107 129280154 -59999400 + (TG)n Simple_repeat Simple_repeat 2 48 0 901 228 94 18 chr6 129280154 129280455 -59999099 - MLT2D LTR ERVL -30 384 7 1089 264 99 16 chr6 129280456 129281117 -59998437 + L1ME2 LINE L1 5088 5809 -355 2326 208 42 5 chr6 129281137 129281570 -59997984 + MLT2B2 LTR ERVL 1 449 -66 180 0 0 0 chr6 129281573 129281593 -59997961 + (TC)n Simple_repeat Simple_repeat 1 20 0 279 0 0 0 chr6 129281597 129281628 -59997926 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 1197 173 98 0 chr6 129281644 129281898 -59997656 + MER2 DNA MER2_type 40 318 -27 240 156 22 0 chr6 129281900 129281945 -59997609 - MLT2B2 LTR ERVL 0 515 470 198 103 0 0 chr6 129281945 129281974 -59997580 + (CA)n Simple_repeat Simple_repeat 2 30 0 708 264 88 22 chr6 129281991 129282129 -59997425 + L1ME2 LINE L1 5866 5993 -171 2021 145 30 33 chr6 129282129 129282285 -59997269 + THE1B LTR MaLR 1 156 -208 2182 110 3 0 chr6 129282285 129282576 -59996978 - AluY SINE Alu -19 292 1 2021 145 30 33 chr6 129282576 129282784 -59996770 + THE1B LTR MaLR 156 364 0 708 264 88 22 chr6 129282784 129282918 -59996636 + L1ME2 LINE L1 5993 6156 -8 1707 239 34 36 chr6 129283799 129284275 -59995279 - MLT1D LTR MaLR -4 501 27 911 86 34 0 chr6 129286383 129286500 -59993054 + AluSq/x SINE Alu 5 125 -188 308 281 0 0 chr6 129286604 129286686 -59992868 + MER58B DNA MER1_type 255 336 -5 468 316 53 50 chr6 129287220 129287521 -59992033 + MLT1I LTR MaLR 85 386 -23 939 266 9 0 chr6 129287698 129287912 -59991642 + MER20 DNA MER1_type 4 219 0 2911 161 28 19 chr6 129287953 129288495 -59991059 - MER44D DNA MER2_type -3 602 1 1799 185 28 14 chr6 129288825 129289224 -59990330 + L1PB4 LINE L1 5644 6045 -111 23424 112 19 9 chr6 129289917 129293476 -59986078 + L1P LINE L1 11 3603 -2543 352 353 74 42 chr6 129393488 129394012 -59885542 - L2 LINE L2 -938 2376 1836 2083 142 10 0 chr6 129395719 129396022 -59883532 + AluSx SINE Alu 1 306 -6 1072 220 31 14 chr6 129396232 129396523 -59883031 + L1MB5 LINE L1 5725 6020 -154 2333 107 0 3 chr6 129397488 129397797 -59881757 + AluSx SINE Alu 1 308 -4 864 166 7 7 chr6 129397805 129397956 -59881598 + FRAM SINE Alu 1 151 -25 291 286 91 13 chr6 129398696 129398850 -59880704 + MLT1I LTR MaLR 230 395 -14 379 395 50 27 chr6 129398961 129399298 -59880256 + L2 LINE L2 2325 2669 -645 1173 181 68 17 chr6 129399310 129399547 -59880007 + Ricksha DNA DNA 41 289 -2957 * 5626 171 51 40 chr6 129399545 129400741 -59878813 + Ricksha DNA DNA 1821 3029 -217 420 213 11 0 chr6 129400752 129400846 -59878708 - Ricksha DNA DNA -1120 134 40 331 359 47 16 chr6 129401294 129401422 -59878132 + L2 LINE L2 3139 3270 -2 21 82 0 0 chr6 129401826 129401875 -59877679 + AT_rich Low_complexity Low_complexity 1 49 0 27 29 0 0 chr6 129402142 129402176 -59877378 + AT_rich Low_complexity Low_complexity 1 34 0 13559 32 17 2 chr6 129402387 129404824 -59874730 - L1PA2 LINE L1 0 6155 3712 333 0 0 0 chr6 129407030 129407067 -59872487 + (TG)n Simple_repeat Simple_repeat 2 38 0 240 86 0 0 chr6 129407829 129407864 -59871690 + (GA)n Simple_repeat Simple_repeat 1 35 0 694 191 5 53 chr6 129408684 129408872 -59870682 - MER53 DNA DNA 0 189 11 30 0 0 0 chr6 129409001 129409031 -59870523 + AT_rich Low_complexity Low_complexity 1 30 0 679 202 16 0 chr6 129409031 129409155 -59870399 - FLAM_C SINE Alu -17 126 1 944 179 0 0 chr6 129409348 129409499 -59870055 + FRAM SINE Alu 5 155 -11 236 247 24 12 chr6 129410894 129410979 -59868575 - L1MC4 LINE L1 -1339 6703 6618 2054 146 26 98 chr6 129411259 129411726 -59867828 - Tigger2a DNA MER2_type 0 434 2 13758 200 24 11 chr6 129411734 129418226 -59861328 + L1PB1 LINE L1 6 6866 -1 234 0 0 0 chr6 129419851 129419877 -59859677 + (T)n Simple_repeat Simple_repeat 1 26 0 216 250 226 54 chr6 129420384 129420552 -59859002 + MIR SINE MIR 66 262 0 5132 58 11 3 chr6 129421095 129421748 -59857806 - L1PA6 LINE L1 0 6154 5497 1855 40 0 4 chr6 129421748 129422012 -59857542 + L1PA6 LINE L1 5233 5495 -659 368 327 40 7 chr6 129422148 129422298 -59857256 + MIR SINE MIR 77 231 -31 320 247 35 12 chr6 129422538 129422623 -59856931 - L2 LINE L2 0 3272 3186 220 291 177 0 chr6 129422817 129422896 -59856658 + L2 LINE L2 3180 3272 0 448 249 76 61 chr6 129422914 129423111 -59856443 + MER63A DNA MER1_type 1 200 -10 720 310 5 0 chr6 129423269 129423456 -59856098 - MIR SINE MIR -73 189 2 187 253 169 12 chr6 129424409 129424492 -59855062 - L3 LINE CR1 -265 1312 1217 424 336 15 2 chr6 129425650 129425803 -59853751 + MIR SINE MIR 23 177 -31 2082 106 3 10 chr6 129426789 129427082 -59852472 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr6 129427642 129427665 -59851889 + AT_rich Low_complexity Low_complexity 1 23 0 342 357 74 16 chr6 129427858 129428102 -59851452 - MIR SINE MIR 0 262 5 21 36 0 0 chr6 129428382 129428410 -59851144 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 129428491 129428514 -59851040 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2308 62 0 10 chr6 129428518 129428807 -59850747 - AluY SINE Alu -25 286 1 1321 102 78 0 chr6 129429249 129429455 -59850099 - L1MA2 LINE L1 0 6304 6083 536 310 56 43 chr6 129429456 129429688 -59849866 + L2 LINE L2 3077 3311 -2 324 83 0 0 chr6 129430160 129430208 -59849346 + (CAT)n Simple_repeat Simple_repeat 2 49 0 220 242 65 65 chr6 129430391 129430453 -59849101 + MIR SINE MIR 17 78 -184 776 296 85 15 chr6 129430499 129430888 -59848666 + LTR33 LTR ERVL 42 457 -64 252 333 65 0 chr6 129430914 129431022 -59848532 + MIR SINE MIR 118 232 -30 249 33 0 0 chr6 129432559 129432589 -59846965 + (A)n Simple_repeat Simple_repeat 1 30 0 611 239 8 0 chr6 129434388 129434518 -59845036 + FLAM_C SINE Alu 1 131 -2 2155 129 0 3 chr6 129434850 129435153 -59844401 - AluSq SINE Alu -11 302 1 3894 218 67 20 chr6 129435298 129436269 -59843285 + Charlie1a DNA MER1_type 6 1022 -433 353 252 39 77 chr6 129436296 129436451 -59843103 - MER52A LTR ERV1 -5 1750 1602 250 156 22 0 chr6 129436488 129436533 -59843021 - MER52A LTR ERV1 -503 1252 1207 2535 204 62 19 chr6 129436597 129437180 -59842374 - LTR28 LTR ERV1 -412 608 1 1186 211 103 23 chr6 129437180 129437579 -59841975 + Charlie1a DNA MER1_type 1025 1455 0 339 231 19 10 chr6 129438356 129438460 -59841094 + (TA)n Simple_repeat Simple_repeat 1 105 0 433 267 169 19 chr6 129438534 129438800 -59840754 + Tigger8 DNA MER2_type 178 483 -183 213 233 0 0 chr6 129438803 129438846 -59840708 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 282 307 141 31 chr6 129439046 129439238 -59840316 + L2 LINE L2 2656 2868 -446 1096 221 76 6 chr6 129439832 129440148 -59839406 - L1MB7 LINE L1 0 6184 5847 305 208 117 0 chr6 129440158 129440235 -59839319 + MER5C DNA MER1_type 238 323 -1 186 338 56 0 chr6 129440993 129441064 -59838490 - MIR SINE MIR -22 240 166 205 162 0 0 chr6 129441187 129441224 -59838330 + (CA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr6 129442591 129442614 -59836940 + AT_rich Low_complexity Low_complexity 1 23 0 779 158 6 22 chr6 129443220 129443403 -59836151 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 413 281 0 7 chr6 129443410 129443549 -59836005 + L1ME2 LINE L1 5696 5833 -331 * 32081 47 1 2 chr6 129443543 129447508 -59832046 - L1P LINE L1 -2182 3964 2 489 335 12 62 chr6 129449262 129449662 -59829892 - L1MC4a LINE L1 -1865 5943 5564 261 83 0 0 chr6 129449886 129449922 -59829632 + (TG)n Simple_repeat Simple_repeat 1 36 0 337 67 50 0 chr6 129450486 129450546 -59829008 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 1103 245 162 57 chr6 129451717 129452371 -59827183 - MER20B DNA MER1_type -60 723 1 1387 226 39 30 chr6 129452667 129453004 -59826550 + MLT1A1 LTR MaLR 26 365 0 249 57 0 0 chr6 129453673 129453708 -59825846 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 7495 29 0 0 chr6 129453708 129455131 -59824423 - L1PA3 LINE L1 -10 6145 4721 1682 33 14 0 chr6 129455458 129455668 -59823886 - L1PA4 LINE L1 -3 6152 5940 248 322 30 76 chr6 129455819 129456292 -59823262 - L1ME3A LINE L1 -209 5961 5508 419 279 77 21 chr6 129456364 129456699 -59822855 - L1ME3A LINE L1 -712 5466 5116 586 254 117 25 chr6 129458900 129459140 -59820414 + MER46C DNA MER2_type 73 334 -4 24 77 0 0 chr6 129459183 129459235 -59820319 + AT_rich Low_complexity Low_complexity 1 52 0 225 293 13 0 chr6 129459236 129459311 -59820243 - HAL1 LINE L1 0 2507 2432 3253 236 24 15 chr6 129459427 129460847 -59818707 - L1MB8 LINE L1 -38 6140 4709 1135 185 0 5 chr6 129460847 129461031 -59818523 - AluJo SINE Alu -66 246 64 1614 259 25 8 chr6 129461057 129461547 -59818007 - L1MB8 LINE L1 -1448 4698 4201 4276 252 60 25 chr6 129461548 129461611 -59817943 - L1MB8 LINE L1 -2220 3926 3867 2333 133 5 19 chr6 129461611 129461980 -59817574 + THE1B LTR MaLR 1 364 0 4276 252 60 25 chr6 129461980 129462262 -59817292 - L1MB8 LINE L1 -2279 3867 3596 1594 202 19 19 chr6 129462262 129462574 -59816980 - AluJo SINE Alu 0 312 1 4276 252 60 25 chr6 129462574 129463953 -59815601 - L1MB8 LINE L1 -2550 3596 2142 457 265 33 60 chr6 129463956 129464107 -59815447 - L1MA9 LINE L1 -2 6289 6143 7253 144 16 13 chr6 129464113 129465277 -59814277 - HSMAR2 DNA Mariner -2 1300 133 2186 227 12 15 chr6 129465322 129465918 -59813636 + L1PA11 LINE L1 1467 2824 -4760 2724 95 31 5 chr6 129465922 129466312 -59813242 + MLT2A1 LTR ERVL 1 400 -44 271 44 44 0 chr6 129466383 129466428 -59813126 + (TA)n Simple_repeat Simple_repeat 2 48 0 20414 156 34 19 chr6 129466466 129466826 -59812728 + L1PA11 LINE L1 2807 3160 -4452 2166 97 0 23 chr6 129466826 129467126 -59812428 + AluSg SINE Alu 6 298 -12 20414 156 34 19 chr6 129467126 129469100 -59810454 + L1PA11 LINE L1 3160 5103 -2509 201 39 0 0 chr6 129469100 129469126 -59810428 + (CAA)n Simple_repeat Simple_repeat 3 28 0 20414 156 34 19 chr6 129469126 129471447 -59808107 + L1PA11 LINE L1 5103 7535 -77 2153 120 3 0 chr6 129471447 129471748 -59807806 - AluSp SINE Alu -11 302 1 20414 156 34 19 chr6 129471748 129471827 -59807727 + L1PA11 LINE L1 7535 7611 -1 318 312 94 94 chr6 129472114 129472422 -59807132 + L2 LINE L2 2965 3272 0 963 326 20 49 chr6 129472489 129472995 -59806559 + LTR16C LTR ERVL 1 491 0 237 361 90 20 chr6 129474584 129474828 -59804726 + L2 LINE L2 2076 2336 -978 297 277 76 34 chr6 129474877 129474996 -59804558 - MIR SINE MIR -78 184 61 4939 68 0 0 chr6 129475102 129475736 -59803818 + L1PA6 LINE L1 5519 6152 -2 314 398 96 28 chr6 129475779 129476166 -59803388 + L2 LINE L2 2422 2834 -480 2657 85 19 3 chr6 129476280 129476656 -59802898 - L1PA8 LINE L1 0 6172 5791 1278 279 43 53 chr6 129476665 129477489 -59802065 - L2 LINE L2 -5 3308 2484 23 33 0 0 chr6 129477647 129477677 -59801877 + AT_rich Low_complexity Low_complexity 1 30 0 995 290 35 24 chr6 129477986 129478276 -59801278 - L2 LINE L2 -823 2491 2199 315 351 45 69 chr6 129478288 129478576 -59800978 + L2 LINE L2 2948 3228 -44 310 183 24 37 chr6 129479407 129479489 -59800065 - L1PB4 LINE L1 -1 6165 6085 1136 258 49 69 chr6 129479509 129480060 -59799494 - L1MC5 LINE L1 -728 7233 6694 1924 173 30 19 chr6 129480078 129480449 -59799105 + THE1C LTR MaLR 1 375 0 2205 274 57 40 chr6 129480872 129481920 -59797634 + L1MEc LINE L1 245 1170 -4943 33284 35 1 0 chr6 129482001 129486849 -59792705 - L1PA3 LINE L1 0 6155 1327 610 204 0 7 chr6 129486944 129487235 -59792319 + (CA)n Simple_repeat Simple_repeat 1 288 0 703 70 0 0 chr6 129487236 129487336 -59792218 + L1P LINE L1 1231 1330 -4816 25 31 0 0 chr6 129487377 129487409 -59792145 + AT_rich Low_complexity Low_complexity 1 32 0 694 210 6 6 chr6 129487556 129487892 -59791662 + (TG)n Simple_repeat Simple_repeat 1 336 0 2182 114 0 7 chr6 129488104 129488412 -59791142 - AluY SINE Alu -5 306 1 37 23 0 0 chr6 129489072 129489116 -59790438 + AT_rich Low_complexity Low_complexity 1 44 0 865 261 66 63 chr6 129489558 129489983 -59789571 - L1MCb LINE L1 -5049 996 571 236 119 99 158 chr6 129490086 129490187 -59789367 - L1MCb LINE L1 -5482 563 469 244 162 44 59 chr6 129490227 129490295 -59789259 - L1MCb LINE L1 -5963 82 16 28 48 0 0 chr6 129492150 129492192 -59787362 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr6 129492754 129492784 -59786770 + AT_rich Low_complexity Low_complexity 1 30 0 23 78 0 0 chr6 129492886 129492937 -59786617 + AT_rich Low_complexity Low_complexity 1 51 0 186 43 0 0 chr6 129493673 129493696 -59785858 + (TTCCC)n Simple_repeat Simple_repeat 4 26 0 786 284 105 59 chr6 129494804 129495262 -59784292 + MLT1H LTR MaLR 70 548 -1 200 383 106 0 chr6 129495342 129495436 -59784118 - MIR3 SINE MIR -96 112 9 3051 180 53 122 chr6 129495581 129495998 -59783556 - L1MB8 LINE L1 -9 6169 5725 1065 137 0 0 chr6 129495998 129496206 -59783348 + (TA)n Simple_repeat Simple_repeat 1 208 0 3051 180 53 122 chr6 129496206 129497048 -59782506 - L1MB8 LINE L1 -453 5725 4827 2119 109 0 0 chr6 129497048 129497369 -59782185 - AluSq SINE Alu 0 321 1 3051 180 53 122 chr6 129497369 129497386 -59782168 - L1MB8 LINE L1 -1351 4827 4980 2340 167 47 30 chr6 129497386 129497924 -59781630 - LTR10B LTR ERV1 0 547 1 3051 180 53 122 chr6 129497924 129497980 -59781574 - L1MB8 LINE L1 -1197 4981 4923 21 0 0 0 chr6 129498474 129498495 -59781059 + AT_rich Low_complexity Low_complexity 1 21 0 269 290 0 0 chr6 129498744 129498806 -59780748 - L3 LINE CR1 -1202 375 314 234 301 37 51 chr6 129499122 129499338 -59780216 + HAL1b LINE L1 594 806 -542 23 0 0 0 chr6 129499338 129499361 -59780193 + AT_rich Low_complexity Low_complexity 1 23 0 923 232 32 0 chr6 129499705 129499890 -59779664 + MER58A DNA MER1_type 4 194 -30 295 400 45 0 chr6 129500122 129500277 -59779277 - L2 LINE L2 -224 3048 2887 258 32 0 0 chr6 129500434 129500465 -59779089 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr6 129501105 129501128 -59778426 + AT_rich Low_complexity Low_complexity 1 23 0 1976 56 0 99 chr6 129502949 129503233 -59776321 + AluY SINE Alu 1 256 -55 627 108 0 0 chr6 129503250 129503343 -59776211 + (TA)n Simple_repeat Simple_repeat 1 93 0 33 25 0 0 chr6 129504157 129504197 -59775357 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr6 129505434 129505455 -59774099 + AT_rich Low_complexity Low_complexity 1 21 0 2268 65 14 7 chr6 129505571 129505862 -59773692 + AluY SINE Alu 1 293 -18 1606 133 59 0 chr6 129505931 129506201 -59773353 - L1M2 LINE L1 -533 5779 5494 1863 200 52 2 chr6 129506204 129506624 -59772930 + L1 LINE L1 3338 3778 -2368 386 233 0 0 chr6 129506608 129506698 -59772856 - L1M2 LINE L1 -769 5543 5454 * 298 182 0 0 chr6 129506903 129506958 -59772596 + MER3 DNA MER1_type 155 209 0 256 259 205 18 chr6 129507229 129507341 -59772213 + MIR3 SINE MIR 8 140 -68 22 0 0 0 chr6 129507426 129507448 -59772106 + AT_rich Low_complexity Low_complexity 1 22 0 716 232 6 30 chr6 129508028 129508196 -59771358 + MER20 DNA MER1_type 56 219 0 222 250 0 60 chr6 129508217 129508317 -59771237 + CT-rich Low_complexity Low_complexity 1 94 0 2532 136 18 0 chr6 129509564 129509960 -59769594 + MER57A LTR ERV1 1 403 0 442 273 97 0 chr6 129509961 129510115 -59769439 - Charlie8 DNA MER1_type -2238 179 11 1214 141 133 6 chr6 129510213 129510542 -59769012 + L1PA15 LINE L1 5665 6117 -48 556 98 67 6 chr6 129510546 129510791 -59768763 + L1PA15 LINE L1 5776 6159 -6 2308 221 78 40 chr6 129511125 129511651 -59767903 - MLT2B3 LTR ERVL -8 546 1 1684 142 14 0 chr6 129511685 129511967 -59767587 - L1MA3 LINE L1 0 6305 6020 288 0 0 0 chr6 129512455 129512487 -59767067 + (CA)n Simple_repeat Simple_repeat 1 32 0 232 339 69 0 chr6 129513425 129513555 -59765999 + L2 LINE L2 814 952 -2362 305 290 95 109 chr6 129513567 129514130 -59765424 + L2 LINE L2 1478 2031 -1283 3133 151 43 35 chr6 129514130 129514705 -59764849 + LTR22 LTR ERVK 1 580 0 305 290 95 109 chr6 129514705 129514845 -59764709 + L2 LINE L2 2031 2171 -1143 284 294 45 45 chr6 129515431 129515700 -59763854 - L1MEd LINE L1 -4923 1196 928 229 171 14 14 chr6 129515702 129515772 -59763782 + (TA)n Simple_repeat Simple_repeat 2 71 0 1863 111 15 87 chr6 129517147 129517479 -59762075 - AluSq SINE Alu -5 308 1 21 0 0 0 chr6 129518385 129518406 -59761148 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chr6 129519230 129519260 -59760294 + (TC)n Simple_repeat Simple_repeat 1 30 0 193 361 25 25 chr6 129519746 129519865 -59759689 + L2 LINE L2 3154 3272 0 1456 96 18 5 chr6 129520475 129520693 -59758861 + L1MA5 LINE L1 6057 6277 -23 303 296 156 21 chr6 129520974 129521160 -59758394 - MIR SINE MIR 0 262 52 234 277 17 51 chr6 129521254 129521431 -59758123 + (TATATG)n Simple_repeat Simple_repeat 5 175 0 * 258 285 21 14 chr6 129521307 129521451 -59758103 + (TA)n Simple_repeat Simple_repeat 2 146 0 24 53 0 0 chr6 129522581 129522619 -59756935 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 129522701 129522722 -59756832 + AT_rich Low_complexity Low_complexity 1 21 0 2224 82 0 0 chr6 129523951 129524232 -59755322 + AluSg SINE Alu 3 283 -27 687 163 0 0 chr6 129524232 129524355 -59755199 + (TA)n Simple_repeat Simple_repeat 2 124 0 258 360 83 31 chr6 129524356 129524684 -59754870 - L2 LINE L2 -248 3024 2683 2157 66 43 26 chr6 129524684 129524986 -59754568 + AluY SINE Alu 1 307 -4 620 332 55 18 chr6 129525044 129525106 -59754448 - LTR50 LTR ERVL -1 682 624 1201 225 4 8 chr6 129525106 129525346 -59754208 - MER8 DNA MER2_type 0 239 1 620 332 55 18 chr6 129525346 129525681 -59753873 - LTR50 LTR ERVL -59 624 342 611 257 104 10 chr6 129525740 129525942 -59753612 - LTR50 LTR ERVL -574 221 1 346 349 141 17 chr6 129526215 129526456 -59753098 - L2 LINE L2 -680 2634 2364 712 250 80 66 chr6 129526459 129526728 -59752826 - L1ME1 LINE L1 -19 6145 5905 2687 235 56 9 chr6 129526823 129527690 -59751864 - L1ME1 LINE L1 -79 6481 5582 855 254 187 36 chr6 129527723 129527919 -59751635 - L1ME1 LINE L1 -1695 4845 4680 206 32 32 0 chr6 129527919 129527950 -59751604 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 855 254 187 36 chr6 129527950 129528367 -59751187 - L1ME1 LINE L1 -1860 4680 4139 * 1770 243 50 89 chr6 129528363 129529275 -59750279 - L1ME1 LINE L1 -2615 3925 3079 1297 102 0 5 chr6 129529275 129529461 -59750093 + L1PA13 LINE L1 5975 6159 -4 1770 243 50 89 chr6 129529461 129529860 -59749694 - L1ME1 LINE L1 -3461 3079 2666 6650 60 2 4 chr6 129529872 129531136 -59748418 - L1PA7 LINE L1 -5 6149 4869 3344 67 2 7 chr6 129531139 129531589 -59747965 - LTR7 LTR ERV1 -2 448 1 2557 71 45 13 chr6 129531589 129531969 -59747585 - HERVH LTR ERV1 0 7713 7322 1378 134 19 0 chr6 129531967 129532183 -59747371 - HERVH LTR ERV1 -1894 5819 5600 * 4267 136 14 1 chr6 129532184 129532838 -59746716 - HERVH LTR ERV1 -2564 5149 4488 3364 113 0 4 chr6 129532840 129533336 -59746218 - HERVH LTR ERV1 -3720 3993 3500 * 20178 94 61 25 chr6 129533335 129536513 -59743041 - HERVH LTR ERV1 -4423 3290 1 3451 62 0 7 chr6 129536515 129536966 -59742588 - LTR7 LTR ERV1 -2 448 1 1250 99 0 0 chr6 129536967 129537149 -59742405 - L1P LINE L1 -1275 4871 4690 272 278 71 14 chr6 129537174 129537455 -59742099 - L1ME1 LINE L1 -3890 2650 2354 339 137 3 68 chr6 129537528 129537856 -59741698 + (TA)n Simple_repeat Simple_repeat 1 306 0 2239 168 12 5 chr6 129537863 129538274 -59741280 - Tigger2 DNA MER2_type -38 2680 2267 475 119 0 0 chr6 129538258 129538325 -59741229 - Tigger2 DNA MER2_type -2649 69 3 * 1408 248 92 70 chr6 129538329 129539199 -59740355 - L1ME1 LINE L1 -4378 2162 1265 210 37 0 0 chr6 129539199 129539226 -59740328 + (CA)n Simple_repeat Simple_repeat 1 27 0 1408 248 92 70 chr6 129539226 129539592 -59739962 - L1ME1 LINE L1 -5275 1265 909 333 348 54 25 chr6 129540090 129540306 -59739248 - L1ME1 LINE L1 -6239 304 34 538 323 59 89 chr6 129540318 129541184 -59738370 - L2 LINE L2 -978 2336 1497 436 310 17 0 chr6 129541216 129541332 -59738222 + LTR16A1 LTR ERVL 340 457 0 542 317 89 85 chr6 129541334 129541453 -59738101 + L2 LINE L2 2233 2350 -964 1826 127 39 72 chr6 129541453 129541840 -59737714 - THE1C LTR MaLR -1 374 1 542 317 89 85 chr6 129541840 129542260 -59737294 + L2 LINE L2 2350 2774 -540 378 340 77 50 chr6 129542464 129542802 -59736752 + L2 LINE L2 2967 3313 0 673 333 38 0 chr6 129543070 129543307 -59736247 + MIR SINE MIR 15 260 -2 28 0 0 0 chr6 129543858 129543886 -59735668 + AT_rich Low_complexity Low_complexity 1 28 0 473 184 0 58 chr6 129543886 129543989 -59735565 - L1PA16 LINE L1 -13 6153 6057 2181 134 36 25 chr6 129546356 129546714 -59732840 + THE1B LTR MaLR 1 362 -2 11134 110 11 6 chr6 129546716 129548289 -59731265 + THE1B-int LTR MaLR 1 1580 0 2123 127 26 63 chr6 129548289 129548667 -59730887 + THE1B LTR MaLR 1 364 0 577 235 25 12 chr6 129550182 129550344 -59729210 - MER96B DNA MER1_type? 0 417 254 22 0 0 0 chr6 129550423 129550445 -59729109 + AT_rich Low_complexity Low_complexity 1 22 0 9394 36 0 0 chr6 129550642 129551770 -59727784 - L1P LINE L1 -1386 4760 3633 265 292 26 26 chr6 129553330 129553443 -59726111 + HAL1b LINE L1 431 543 -805 511 228 288 5 chr6 129553664 129553848 -59725706 + MIR SINE MIR 15 250 -12 243 272 114 25 chr6 129553857 129554015 -59725539 - L1ME LINE L1 -362 5759 5588 195 42 0 0 chr6 129554227 129554251 -59725303 + (T)n Simple_repeat Simple_repeat 1 24 0 37071 38 25 1 chr6 129554283 129559692 -59719862 - L1PA3 LINE L1 -2 6153 617 792 52 0 0 chr6 129559686 129559783 -59719771 - L1PA3 LINE L1 -6048 98 2 * 2373 94 7 0 chr6 129560383 129560692 -59718862 - AluSq SINE Alu -2 311 1 457 297 90 79 chr6 129561209 129561471 -59718083 + L1ME4a LINE L1 5385 5656 -465 1819 166 10 13 chr6 129561471 129561784 -59717770 + AluJb SINE Alu 1 312 0 457 297 90 79 chr6 129561784 129561989 -59717565 + L1ME4a LINE L1 5656 5857 -264 26 0 0 0 chr6 129562011 129562037 -59717517 + AT_rich Low_complexity Low_complexity 1 26 0 261 265 12 0 chr6 129562436 129562519 -59717035 + (TA)n Simple_repeat Simple_repeat 2 85 0 447 278 64 35 chr6 129562582 129562755 -59716799 - MER5B DNA MER1_type 0 178 1 189 263 12 100 chr6 129562822 129562902 -59716652 + L3 LINE CR1 422 494 -1083 264 137 0 0 chr6 129563922 129563973 -59715581 + (GA)n Simple_repeat Simple_repeat 1 51 0 592 256 102 79 chr6 129564873 129565127 -59714427 - MIR SINE MIR 0 262 3 877 194 12 65 chr6 129566471 129566736 -59712818 - LTR12 LTR ERV1 -262 452 238 1439 211 34 19 chr6 129567039 129567362 -59712192 - HERV17 LTR ERV1 0 8626 8299 * 11099 231 24 18 chr6 129567354 129570494 -59709060 - HERV17 LTR ERV1 -4850 3776 1 645 226 22 87 chr6 129570538 129570768 -59708786 - LTR12 LTR ERV1 -262 452 238 212 155 0 52 chr6 129571132 129571190 -59708364 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 252 259 12 35 chr6 129571217 129571302 -59708252 + (TATATG)n Simple_repeat Simple_repeat 1 83 0 4255 139 128 14 chr6 129571902 129572710 -59706844 + MER4D LTR ERV1 4 903 0 1493 200 37 129 chr6 129572846 129573412 -59706142 + MER67D LTR ERV1 1 514 0 28 29 0 0 chr6 129573726 129573761 -59705793 + AT_rich Low_complexity Low_complexity 1 35 0 4069 108 50 0 chr6 129573762 129574364 -59705190 - MER41B LTR ERV1 -3 632 1 22 56 0 0 chr6 129574381 129574417 -59705137 + AT_rich Low_complexity Low_complexity 1 36 0 202 170 21 21 chr6 129574891 129574938 -59704616 + CT-rich Low_complexity Low_complexity 2 48 0 360 0 0 0 chr6 129576220 129576260 -59703294 + (TG)n Simple_repeat Simple_repeat 2 41 0 6310 138 54 22 chr6 129576385 129577578 -59701976 - Tigger3b DNA MER2_type 0 1231 1 30 0 0 0 chr6 129577688 129577718 -59701836 + AT_rich Low_complexity Low_complexity 1 30 0 1683 138 37 40 chr6 129580099 129580396 -59699158 + AluSx SINE Alu 1 296 -16 893 112 15 0 chr6 129580506 129580640 -59698914 + THE1-int LTR MaLR 1365 1500 -80 2184 167 30 41 chr6 129580640 129581194 -59698360 - MLT2A2 LTR ERVL 0 554 1 599 45 0 34 chr6 129581194 129581282 -59698272 + THE1C-int LTR MaLR 1496 1580 0 1644 176 57 31 chr6 129581296 129581648 -59697906 + THE1C LTR MaLR 15 375 0 424 283 0 0 chr6 129581651 129581796 -59697758 + (TA)n Simple_repeat Simple_repeat 2 146 0 325 161 0 0 chr6 129583425 129583485 -59696069 - FLAM SINE Alu -10 123 73 306 263 22 102 chr6 129584362 129584499 -59695055 - L1ME3 LINE L1 -81 6081 5956 22 70 0 0 chr6 129584892 129584935 -59694619 + AT_rich Low_complexity Low_complexity 1 43 0 418 301 68 35 chr6 129584984 129585490 -59694064 - L1ME3 LINE L1 -702 5462 4942 450 279 106 68 chr6 129585502 129586485 -59693069 - L1ME3 LINE L1 -1336 4810 3781 213 132 73 15 chr6 129586485 129586553 -59693001 + (TA)n Simple_repeat Simple_repeat 2 73 0 242 351 36 18 chr6 129586554 129586776 -59692778 - L1ME3 LINE L1 -2374 3772 3547 397 314 136 11 chr6 129586804 129586995 -59692559 - L2 LINE L2 -1274 2040 1826 2118 308 97 28 chr6 129586995 129588159 -59691395 - L2 LINE L2 -1760 1554 311 218 348 90 22 chr6 129588298 129588387 -59691167 - MIR SINE MIR -147 115 21 2667 207 4 2 chr6 129588389 129588939 -59690615 + L1PA16 LINE L1 5602 6152 -14 207 0 0 0 chr6 129589682 129589705 -59689849 + (CA)n Simple_repeat Simple_repeat 2 24 0 444 221 76 23 chr6 129591689 129591820 -59687734 + MIR SINE MIR 100 237 -25 577 324 21 48 chr6 129592104 129592394 -59687160 + L2 LINE L2 3010 3291 -22 261 0 0 0 chr6 129594013 129594042 -59685512 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 757 159 0 23 chr6 129594829 129594961 -59684593 + FLAM_C SINE Alu 6 134 -9 530 193 105 0 chr6 129594964 129595078 -59684476 + AluJb SINE Alu 183 308 -4 266 286 116 27 chr6 129595107 129595219 -59684335 - MLT1J2 LTR MaLR -292 158 37 11751 62 80 8 chr6 129595499 129597109 -59682445 + L1P LINE L1 4 1730 -4416 3134 91 14 0 chr6 129597701 129598139 -59681415 - L1PA13 LINE L1 0 6163 5720 295 328 159 21 chr6 129598295 129598484 -59681070 + MIR SINE MIR 47 261 -1 1650 146 14 134 chr6 129598618 129598979 -59680575 - THE1C LTR MaLR 0 375 71 2084 134 3 10 chr6 129598979 129599293 -59680261 + AluSx SINE Alu 1 312 0 1650 146 14 134 chr6 129599293 129599357 -59680197 - THE1C LTR MaLR -304 71 1 2049 134 16 10 chr6 129599579 129599884 -59679670 - AluSx SINE Alu -5 307 1 363 23 0 0 chr6 129600601 129600645 -59678909 + (GA)n Simple_repeat Simple_repeat 1 44 0 1327 142 13 54 chr6 129600746 129600985 -59678569 + AluSg/x SINE Alu 84 312 0 1243 291 94 34 chr6 129600998 129602048 -59677506 + L1MEc LINE L1 1255 2367 -4029 21 57 0 0 chr6 129602308 129602343 -59677211 + AT_rich Low_complexity Low_complexity 1 35 0 4905 214 37 28 chr6 129602427 129604098 -59675456 + L1MEc LINE L1 2278 3962 -2253 2682 157 109 47 chr6 129604722 129605398 -59674156 - LTR8A LTR ERV1 -9 718 1 929 233 70 33 chr6 129605694 129605994 -59673560 - L1MD2 LINE L1 -35 6324 6014 2031 126 7 7 chr6 129606037 129606323 -59673231 + AluSx SINE Alu 1 286 -26 757 316 8 28 chr6 129606324 129606571 -59672983 - MIR SINE MIR 0 262 21 356 276 70 64 chr6 129656742 129657086 -59622468 + L1ME2 LINE L1 1372 1717 -4679 263 298 130 28 chr6 129657096 129657311 -59622243 + L1ME2 LINE L1 1767 2003 -4393 934 195 4 6 chr6 129657346 129657548 -59622006 + L1MB8 LINE L1 5626 5834 -344 2202 271 74 36 chr6 129657569 129657775 -59621779 + L1ME2 LINE L1 4021 4218 -1997 2284 81 0 0 chr6 129657775 129658081 -59621473 + AluY SINE Alu 1 306 0 2202 271 74 36 chr6 129658081 129658968 -59620586 + L1ME2 LINE L1 4218 5180 -1035 2164 98 7 0 chr6 129658968 129659255 -59620299 - AluSc SINE Alu 0 309 21 2202 271 74 36 chr6 129659255 129659530 -59620024 + L1ME2 LINE L1 5180 5443 -772 784 203 0 0 chr6 129659563 129659711 -59619843 + FRAM SINE Alu 18 165 -11 338 197 42 0 chr6 129659718 129659789 -59619765 + L1ME2 LINE L1 5439 5512 -727 711 288 81 47 chr6 129659790 129660259 -59619295 + L1ME2 LINE L1 5739 6223 -10 25 0 0 0 chr6 129660428 129660453 -59619101 + AT_rich Low_complexity Low_complexity 1 25 0 1934 143 13 0 chr6 129660862 129661163 -59618391 - AluSc SINE Alu -2 307 3 356 367 67 39 chr6 129661305 129661915 -59617639 + L2 LINE L2 2232 2858 -456 1647 252 69 53 chr6 129661917 129662480 -59617074 + MLT1E2 LTR MaLR 1 572 -54 5065 180 19 3 chr6 129662481 129663771 -59615783 + L1PA16 LINE L1 4839 6150 -16 421 104 15 0 chr6 129663783 129663850 -59615704 + MLT1D LTR MaLR 438 505 0 280 299 65 9 chr6 129664142 129664249 -59615305 + L2 LINE L2 3200 3312 -1 10116 211 53 25 chr6 129666704 129669457 -59610097 + L1MA7 LINE L1 2442 5271 -875 321 212 47 0 chr6 129669458 129669543 -59610011 - Tigger5 DNA MER2_type -2 2321 2233 233 288 0 14 chr6 129669589 129669662 -59609892 - Tigger5 DNA MER2_type -1 2322 2251 4979 187 24 14 chr6 129669684 129670697 -59608857 + L1MA7 LINE L1 5267 6289 -2 236 190 58 124 chr6 129670907 129671028 -59608526 - MIR SINE MIR -46 216 104 1294 190 82 56 chr6 129672079 129672609 -59606945 - MER67C LTR ERV1 0 514 1 182 344 48 70 chr6 129672659 129672845 -59606709 + L2 LINE L2 2069 2250 -1064 22 56 0 0 chr6 129672970 129673006 -59606548 + AT_rich Low_complexity Low_complexity 1 36 0 40478 72 4 1 chr6 129673116 129679254 -59600300 + L1PA5 LINE L1 1 6152 -2 758 211 120 38 chr6 129679597 129679806 -59599748 + LTR54 LTR ERV1 1 226 -284 599 136 144 0 chr6 129679822 129679940 -59599614 - L1MC3 LINE L1 -20 7765 7631 2570 141 39 42 chr6 129679951 129680469 -59599085 - L1MA4A LINE L1 -12 6291 5776 269 288 5 38 chr6 129680484 129680668 -59598886 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 * 453 243 0 12 chr6 129680562 129680731 -59598823 + (TA)n Simple_repeat Simple_repeat 1 167 0 482 150 124 0 chr6 129680751 129680864 -59598690 + LTR54 LTR ERV1 382 508 -2 1036 122 43 0 chr6 129680922 129681086 -59598468 - L1MA4A LINE L1 -516 5787 5617 2182 206 20 24 chr6 129681091 129681585 -59597969 + L1 LINE L1 2529 3020 -3126 1211 191 34 24 chr6 129681592 129681885 -59597669 + LTR54 LTR ERV1 213 508 -2 602 276 24 29 chr6 129682195 129682405 -59597149 - MER3 DNA MER1_type 0 209 1 232 267 67 0 chr6 129682501 129682561 -59596993 - L2 LINE L2 -37 3276 3213 1534 90 59 0 chr6 129682664 129682886 -59596668 - LTR12 LTR ERV1 0 714 480 348 291 8 0 chr6 129682886 129683003 -59596551 - LTR30 LTR ERV1 -79 643 526 1302 126 128 10 chr6 129683003 129683354 -59596200 - LTR12 LTR ERV1 -432 2006 1 77373 7 9 8 chr6 129683354 129692436 -59587118 - HERV9 LTR ERV1 0 1683 1 235 65 52 104 chr6 129692569 129692646 -59586908 + A-rich Low_complexity Low_complexity 3 75 0 560 296 55 24 chr6 129692920 129693299 -59586255 + L1ME4a LINE L1 5492 5882 -239 1713 217 53 14 chr6 129693340 129693755 -59585799 + MER90 LTR ERV1 182 612 -2 302 78 0 20 chr6 129693762 129693813 -59585741 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 24 32 0 0 chr6 129693900 129693931 -59585623 + AT_rich Low_complexity Low_complexity 1 31 0 816 172 15 39 chr6 129694158 129694361 -59585193 - L1MA6 LINE L1 -1 6299 6102 21 36 0 0 chr6 129694468 129694496 -59585058 + AT_rich Low_complexity Low_complexity 1 28 0 985 164 24 0 chr6 129694714 129694927 -59584627 - L1MA8 LINE L1 -4 6287 6070 23 0 0 0 chr6 129695090 129695113 -59584441 + AT_rich Low_complexity Low_complexity 1 23 0 432 291 139 18 chr6 129695317 129695482 -59584072 + MIR SINE MIR 24 208 -54 22 56 0 0 chr6 129695594 129695630 -59583924 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr6 129695694 129695728 -59583826 + AT_rich Low_complexity Low_complexity 1 34 0 612 50 0 0 chr6 129695782 129695862 -59583692 + (TG)n Simple_repeat Simple_repeat 2 81 0 24 0 0 0 chr6 129696071 129696095 -59583459 + AT_rich Low_complexity Low_complexity 1 24 0 21753 158 42 17 chr6 129696703 129701106 -59578448 + L1MA3 LINE L1 17 4549 -3016 37229 44 1 2 chr6 129701107 129707275 -59572279 + L1PA4 LINE L1 3 6155 0 10455 174 15 18 chr6 129707284 129708757 -59570797 + L1MA3 LINE L1 4551 6014 -1710 1955 188 28 39 chr6 129708757 129709147 -59570407 + MSTB LTR MaLR 1 388 -38 2264 85 4 0 chr6 129709147 129709464 -59570090 - AluSg SINE Alu 0 318 1 1955 188 28 39 chr6 129709464 129709503 -59570051 + MSTB LTR MaLR 388 426 0 10455 174 15 18 chr6 129709503 129710546 -59569008 + L1MA3 LINE L1 6014 7059 -665 461 206 0 0 chr6 129710551 129710643 -59568911 + L1 LINE L1 4151 4242 -1904 3620 112 9 77 chr6 129710643 129711320 -59568234 + L1MA3 LINE L1 7094 7724 0 23 68 0 0 chr6 129711638 129711682 -59567872 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr6 129711916 129711946 -59567608 + AT_rich Low_complexity Low_complexity 1 30 0 1114 217 115 0 chr6 129712712 129713016 -59566538 + MER58B DNA MER1_type 1 339 -2 4334 237 92 43 chr6 129713537 129714898 -59564656 + L1MDa LINE L1 20 1447 -5093 3697 213 60 8 chr6 129714898 129715777 -59563777 - L1MC3 LINE L1 -995 6790 5866 2962 247 87 41 chr6 129715802 129716408 -59563146 - L1MCc LINE L1 -4095 2846 2269 279 0 0 0 chr6 129716408 129716439 -59563115 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 2962 247 87 41 chr6 129716439 129718153 -59561401 - L1MCc LINE L1 -4672 2269 5 1594 266 32 10 chr6 129718153 129718750 -59560804 + L1MD1 LINE L1 4686 5295 -851 866 144 0 20 chr6 129718751 129718897 -59560657 + AluJb SINE Alu 170 312 0 3948 189 52 20 chr6 129718897 129719827 -59559727 + L1MD1 LINE L1 5283 6241 -1 23 33 0 0 chr6 129719841 129719871 -59559683 + AT_rich Low_complexity Low_complexity 1 30 0 260 185 0 31 chr6 129720218 129720283 -59559271 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 914 207 22 11 chr6 129720832 129721011 -59558543 - MER5A DNA MER1_type 0 189 9 2218 150 3 6 chr6 129722476 129722836 -59556718 + THE1C LTR MaLR 15 373 -2 9545 131 29 42 chr6 129722836 129724427 -59555127 + THE1C-int LTR MaLR 4 1574 -6 2476 122 3 11 chr6 129724434 129724812 -59554742 + THE1C LTR MaLR 1 375 0 267 305 32 52 chr6 129725738 129725892 -59553662 + MLT1G LTR MaLR 82 232 -317 662 234 45 7 chr6 129725913 129726067 -59553487 + MLT1G LTR MaLR 407 566 -24 21 36 0 0 chr6 129726899 129726927 -59552627 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr6 129727341 129727373 -59552181 + AT_rich Low_complexity Low_complexity 1 32 0 469 244 10 104 chr6 129727589 129727782 -59551772 - L2 LINE L2 -22 3291 3117 395 195 23 46 chr6 129728149 129728236 -59551318 + MIR SINE MIR 16 100 -162 938 335 57 24 chr6 129728504 129728958 -59550596 - L2 LINE L2 -1 3312 2844 1358 282 98 80 chr6 129728958 129729076 -59550478 + MER45C DNA AcHobo 11 125 -1456 2378 59 0 0 chr6 129729076 129729362 -59550192 - AluY SINE Alu -25 286 1 1358 282 98 80 chr6 129729362 129730098 -59549456 + MER45C DNA AcHobo 125 939 -14 316 71 0 0 chr6 129730099 129730141 -59549413 + MADE1 DNA Mariner 2 43 -37 277 274 21 0 chr6 129730358 129730453 -59549101 + L1ME3 LINE L1 6064 6160 -2 2052 194 44 0 chr6 129730709 129731122 -59548432 + MSTB1 LTR MaLR 1 431 -1 489 322 143 34 chr6 129731576 129731934 -59547620 + L2 LINE L2 2558 2875 -438 1848 173 64 9 chr6 129731934 129732280 -59547274 - MLT1A1 LTR MaLR 0 365 1 489 322 143 34 chr6 129732280 129732369 -59547185 + L2 LINE L2 2875 2953 -360 1614 190 7 7 chr6 129732369 129732653 -59546901 - AluJo SINE Alu -5 307 24 489 322 143 34 chr6 129732653 129732875 -59546679 + L2 LINE L2 2953 3305 -8 1738 169 0 17 chr6 129732977 129733273 -59546281 - AluJo SINE Alu -21 291 1 951 193 91 12 chr6 129733274 129733560 -59545994 - MER33 DNA MER1_type -31 293 1 468 297 172 16 chr6 129734148 129734340 -59545214 + MER20B DNA MER1_type 1 222 -561 858 182 86 21 chr6 129734393 129734580 -59544974 - AluJo SINE Alu -27 285 87 285 270 58 95 chr6 129735910 129736099 -59543455 - MIR3 SINE MIR 0 208 27 21 36 0 0 chr6 129736336 129736364 -59543190 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 129736447 129736469 -59543085 + AT_rich Low_complexity Low_complexity 1 22 0 2387 66 30 7 chr6 129736758 129737062 -59542492 + AluY SINE Alu 1 311 0 2140 179 67 9 chr6 129737076 129737218 -59542336 - L1MA9 LINE L1 0 6312 6180 273 75 0 0 chr6 129737218 129737258 -59542296 + (TG)n Simple_repeat Simple_repeat 1 40 0 2140 179 67 9 chr6 129737258 129737579 -59541975 - L1MA9 LINE L1 -132 6180 5822 277 386 0 0 chr6 129739239 129739327 -59540227 + L2 LINE L2 3182 3269 -3 590 315 54 11 chr6 129739332 129739611 -59539943 - MER110 LTR ERV1 -34 457 167 616 233 111 17 chr6 129741135 129741307 -59538247 + MER5A DNA MER1_type 2 189 0 232 312 48 79 chr6 129741675 129741864 -59537690 + MER5A DNA MER1_type 1 183 -6 246 32 0 0 chr6 129742933 129742964 -59536590 + (TG)n Simple_repeat Simple_repeat 2 32 0 370 257 58 47 chr6 129743125 129743278 -59536276 - MIR SINE MIR -3 259 102 245 327 50 10 chr6 129743823 129743924 -59535630 + MIR SINE MIR 86 190 -72 4272 56 6 0 chr6 129745524 129746060 -59533494 + L1PA5 LINE L1 5613 6151 -3 21 0 0 0 chr6 129746241 129746262 -59533292 + AT_rich Low_complexity Low_complexity 1 21 0 527 311 76 86 chr6 129746637 129746772 -59532782 + L1MEd LINE L1 549 684 -5435 399 41 0 0 chr6 129746772 129746821 -59532733 + (CA)n Simple_repeat Simple_repeat 2 50 0 527 311 76 86 chr6 129746821 129747393 -59532161 + L1MEd LINE L1 684 1249 -4870 389 293 84 58 chr6 129747431 129747800 -59531754 + L1MEd LINE L1 1357 1869 -4261 1498 157 94 4 chr6 129747847 129748114 -59531440 + AluSg SINE Alu 1 291 -19 29 0 0 0 chr6 129748114 129748143 -59531411 + AT_rich Low_complexity Low_complexity 1 29 0 8410 96 5 7 chr6 129748616 129749837 -59529717 - L1PA7 LINE L1 -1694 4452 3234 5949 96 14 35 chr6 129749837 129750865 -59528689 + L1PA7 LINE L1 4465 5489 -665 2153 97 0 21 chr6 129750865 129751155 -59528399 + AluY SINE Alu 1 284 -27 2896 91 12 2 chr6 129751258 129751678 -59527876 + L1PA7 LINE L1 5730 6153 -1 21 57 0 0 chr6 129751748 129751783 -59527771 + AT_rich Low_complexity Low_complexity 1 35 0 4935 192 61 10 chr6 129752110 129752709 -59526845 - L1MA6 LINE L1 0 6305 5738 423 0 0 0 chr6 129752709 129752756 -59526798 + (TG)n Simple_repeat Simple_repeat 2 48 0 4935 192 61 10 chr6 129752756 129754059 -59525495 - L1MA6 LINE L1 -567 5738 4273 1319 178 10 82 chr6 129754074 129754240 -59525314 - AluJo SINE Alu -30 282 144 2770 3 0 7 chr6 129754240 129754546 -59525008 + AluYa5 SINE Alu 1 304 -7 1319 178 10 82 chr6 129754546 129754672 -59524882 - AluJo SINE Alu -168 144 11 8390 209 38 9 chr6 129754686 129756687 -59522867 - L1MA6 LINE L1 -1819 4327 2271 21 57 0 0 chr6 129756716 129756751 -59522803 + AT_rich Low_complexity Low_complexity 1 35 0 * 182 61 0 30 chr6 129756722 129756755 -59522799 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 * 6259 159 21 17 chr6 129756751 129757102 -59522452 - L1PB1 LINE L1 -3 6864 6516 471 35 0 0 chr6 129757102 129757159 -59522395 + (CA)n Simple_repeat Simple_repeat 2 58 0 6259 159 21 17 chr6 129757159 129758970 -59520584 - L1PB1 LINE L1 -351 6516 4694 3353 54 26 0 chr6 129758964 129759393 -59520161 - L1P3 LINE L1 -418 5736 5297 * 2672 87 0 5 chr6 129759393 129759761 -59519793 + L1PA7 LINE L1 5788 6154 0 3311 233 9 2 chr6 129759781 129760570 -59518984 - L1PB1 LINE L1 -2160 4702 3909 * 5757 147 87 21 chr6 129760568 129761911 -59517643 - L1PB1 LINE L1 -5290 1573 1 845 206 56 8 chr6 129761905 129762184 -59517370 - L1 LINE L1 -3856 3709 3422 * 1018 124 6 11 chr6 129762216 129762393 -59517161 + (TTCC)n Simple_repeat Simple_repeat 4 179 0 1383 186 0 43 chr6 129762393 129762651 -59516903 - AluSx SINE Alu -40 272 26 2100 252 46 10 chr6 129762657 129763471 -59516083 - L1 LINE L1 -4135 3431 2587 1292 340 68 20 chr6 129763516 129764118 -59515436 - L1 LINE L1 -6155 1411 781 240 228 35 0 chr6 129765213 129765270 -59514284 + MLT1I LTR MaLR 16 74 -335 336 269 121 21 chr6 129765337 129765478 -59514076 + MLT1I LTR MaLR 249 403 -6 24 77 0 0 chr6 129765894 129765946 -59513608 + AT_rich Low_complexity Low_complexity 1 52 0 1957 120 3 54 chr6 129765965 129766282 -59513272 - AluSx SINE Alu -11 301 1 710 248 39 0 chr6 129766496 129766649 -59512905 + MIR SINE MIR 8 166 -96 1356 299 51 57 chr6 129766664 129767803 -59511751 + HAL1 LINE L1 1370 2501 -6 2039 137 3 7 chr6 129767908 129768208 -59511346 + AluSq SINE Alu 2 300 -13 27 29 0 0 chr6 129768216 129768250 -59511304 + AT_rich Low_complexity Low_complexity 1 34 0 32 43 0 0 chr6 129768429 129768475 -59511079 + AT_rich Low_complexity Low_complexity 1 46 0 713 192 8 0 chr6 129768902 129769027 -59510527 - FLAM_A SINE Alu -7 126 1 181 57 75 19 chr6 129769352 129769405 -59510149 + (TA)n Simple_repeat Simple_repeat 2 57 0 198 251 50 10 chr6 129770267 129770342 -59509212 - MIR SINE MIR -69 139 79 438 241 111 49 chr6 129770428 129770590 -59508964 + MER5B DNA MER1_type 1 172 -6 545 239 63 19 chr6 129770823 129770982 -59508572 - MLT1I LTR MaLR 0 409 244 21 57 0 0 chr6 129873089 129873124 -59406430 + AT_rich Low_complexity Low_complexity 1 35 0 455 320 27 7 chr6 129874503 129874653 -59404901 - MIR SINE MIR -109 153 1 222 0 25 50 chr6 129875267 129875307 -59404247 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 31 0 0 0 chr6 129875760 129875791 -59403763 + AT_rich Low_complexity Low_complexity 1 31 0 6956 118 21 15 chr6 129875791 129877147 -59402407 - L1MA1 LINE L1 -7 6295 4932 1279 125 10 22 chr6 129877147 129877448 -59402106 + THE1C LTR MaLR 1 375 0 6516 143 67 10 chr6 129877448 129878508 -59401046 + THE1C-int LTR MaLR 1 1120 -460 20317 167 22 28 chr6 129878509 129879881 -59399673 - L1 LINE L1 -3112 4453 3073 1968 143 3 3 chr6 129879881 129880168 -59399386 - AluSx SINE Alu -25 287 1 20317 167 22 28 chr6 129880168 129883267 -59396287 - L1 LINE L1 -4492 3073 13 186 310 60 20 chr6 129883917 129884017 -59395537 - L2 LINE L2 -169 3103 3000 22 88 0 0 chr6 129884610 129884667 -59394887 + AT_rich Low_complexity Low_complexity 1 57 0 208 339 147 0 chr6 129885764 129885873 -59393681 - MIR SINE MIR -64 144 20 1684 181 7 3 chr6 129885980 129886283 -59393271 - AluJo SINE Alu -8 304 1 208 289 19 0 chr6 129886365 129886417 -59393137 - L2 LINE L2 -15 3298 3246 227 265 15 15 chr6 129886735 129886803 -59392751 + MER94 DNA DNA 59 126 -8 195 69 0 0 chr6 129887301 129887330 -59392224 + (T)n Simple_repeat Simple_repeat 1 29 0 180 289 11 56 chr6 129887354 129887444 -59392110 + L2 LINE L2 2898 2983 -289 1077 144 70 0 chr6 129887567 129887754 -59391800 + L1PA11 LINE L1 5974 6173 -1 1934 174 14 6 chr6 129887870 129888215 -59391339 - MER7A DNA MER2_type 0 346 1 234 0 0 0 chr6 129888591 129888617 -59390937 + (T)n Simple_repeat Simple_repeat 1 26 0 36630 96 9 13 chr6 129888930 129895107 -59384447 - L1PA6 LINE L1 -1 6153 11 182 91 30 0 chr6 129895363 129895396 -59384158 + CT-rich Low_complexity Low_complexity 3 36 0 620 187 6 54 chr6 129895446 129895612 -59383942 + L1ME1 LINE L1 5707 5864 -302 2215 105 0 7 chr6 129895636 129895931 -59383623 + AluY SINE Alu 1 293 -18 510 292 90 46 chr6 129895934 129896413 -59383141 + L1MDa LINE L1 1565 2064 -4476 21 0 0 0 chr6 129896741 129896762 -59382792 + AT_rich Low_complexity Low_complexity 1 21 0 2407 95 0 0 chr6 129897203 129897508 -59382046 + AluSg SINE Alu 1 305 -5 26 0 0 0 chr6 129898048 129898074 -59381480 + AT_rich Low_complexity Low_complexity 1 26 0 402 255 113 0 chr6 129900146 129900252 -59379302 + MIR SINE MIR 29 146 -116 1981 185 90 43 chr6 129900253 129900744 -59378810 - MER67D LTR ERV1 0 514 1 2037 244 62 6 chr6 129901033 129901583 -59377971 - MER119 DNA MER1_type 0 583 3 2029 191 64 71 chr6 129901785 129902335 -59377219 + MLT2B3 LTR ERVL 1 546 -8 2471 156 21 21 chr6 129903905 129904329 -59375225 + MSTB LTR MaLR 1 424 -2 245 236 226 38 chr6 129904797 129904903 -59374651 - L2 LINE L2 0 3313 3188 2394 244 79 29 chr6 129904931 129905853 -59373701 + Zaphod DNA AcHobo 42 1009 -3022 807 217 155 17 chr6 129905831 129906186 -59373368 + Zaphod DNA AcHobo 3598 4001 -30 * 2148 143 22 22 chr6 129906207 129906571 -59372983 - THE1B LTR MaLR 0 364 1 10788 104 7 37 chr6 129906571 129907003 -59372551 - THE1B-int LTR MaLR 0 1580 1137 4205 160 67 96 chr6 129907003 129908106 -59371448 - MER11C LTR ERVK 0 1071 1 10788 104 7 37 chr6 129908106 129909301 -59370253 - THE1B-int LTR MaLR -443 1137 1 2145 140 22 25 chr6 129909301 129909666 -59369888 - THE1B LTR MaLR 0 364 1 205 171 0 0 chr6 129909666 129909701 -59369853 + (ACATG)n Simple_repeat Simple_repeat 3 37 0 394 315 87 14 chr6 129910321 129910540 -59369014 + MIR SINE MIR 6 240 -22 22 0 0 0 chr6 129910566 129910588 -59368966 + AT_rich Low_complexity Low_complexity 1 22 0 688 277 24 0 chr6 129911416 129911582 -59367972 + MLT1H LTR MaLR 78 247 -302 41 0 0 0 chr6 129911682 129911723 -59367831 + AT_rich Low_complexity Low_complexity 1 41 0 2014 119 25 0 chr6 129911723 129912009 -59367545 - AluSx SINE Alu -19 293 1 622 143 0 0 chr6 129912014 129912119 -59367435 - L1MA1 LINE L1 0 6302 6198 215 189 19 0 chr6 129912249 129912302 -59367252 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 278 235 25 12 chr6 129912306 129912387 -59367167 + (CATA)n Simple_repeat Simple_repeat 3 84 0 356 316 98 41 chr6 129912433 129912504 -59367050 - L1MC4a LINE L1 -1882 5926 5860 1258 190 106 6 chr6 129912504 129912815 -59366739 - MER2 DNA MER2_type 0 344 3 356 316 98 41 chr6 129912815 129913060 -59366494 - L1MC4a LINE L1 -1948 5860 5592 289 349 83 44 chr6 129913121 129913508 -59366046 + LTR67 LTR ERVL 76 477 -80 24 32 0 0 chr6 129913914 129913945 -59365609 + AT_rich Low_complexity Low_complexity 1 31 0 347 255 31 92 chr6 129913950 129914276 -59365278 - L1MC4a LINE L1 -914 5232 4927 1062 240 117 30 chr6 129914277 129914641 -59364913 - LTR40b LTR ERVL 0 462 69 263 321 41 15 chr6 129914924 129915120 -59364434 - L1MC4a LINE L1 -1457 4689 4489 1721 165 32 40 chr6 129915155 129915227 -59364327 + THE1C LTR MaLR 3 74 -301 2006 135 44 44 chr6 129915227 129915591 -59363963 - THE1B LTR MaLR 0 364 1 1721 165 32 40 chr6 129915591 129915894 -59363660 + THE1C LTR MaLR 74 375 0 10169 121 33 8 chr6 129915894 129917435 -59362119 + THE1C-int LTR MaLR 1 1580 0 1858 157 32 32 chr6 129917435 129917810 -59361744 + THE1C LTR MaLR 1 375 0 206 250 10 40 chr6 129917832 129917932 -59361622 + T-rich Low_complexity Low_complexity 3 99 0 1953 166 0 3 chr6 129917937 129918238 -59361316 + AluJb SINE Alu 1 300 -12 1983 192 81 2 chr6 129918486 129918881 -59360673 + MSTB LTR MaLR 1 426 0 1456 209 10 14 chr6 129919077 129919373 -59360181 + AluJo SINE Alu 1 295 -17 274 321 28 0 chr6 129919373 129919479 -59360075 - HAL1 LINE L1 -921 1586 1478 250 236 106 86 chr6 129919853 129920145 -59359409 - L1MEd LINE L1 -4926 1193 896 468 247 54 24 chr6 129920886 129921052 -59358502 + MIR SINE MIR 91 261 -1 367 349 59 34 chr6 129922626 129922864 -59356690 - L3 LINE CR1 -78 1499 1256 201 94 0 0 chr6 129922881 129922913 -59356641 + (CA)n Simple_repeat Simple_repeat 1 32 0 1382 185 13 43 chr6 129923397 129923699 -59355855 - AluJo SINE Alu -19 293 1 287 326 168 36 chr6 129924415 129924826 -59354728 + MLT1L LTR MaLR 3 467 -148 196 342 92 0 chr6 129924950 129925026 -59354528 + L2 LINE L2 3180 3262 -10 23 0 0 0 chr6 129926589 129926612 -59352942 + AT_rich Low_complexity Low_complexity 1 23 0 28862 127 12 9 chr6 129929735 129936163 -59343391 + L1PA8 LINE L1 5 6487 0 236 265 61 20 chr6 129936696 129936794 -59342760 + MLT1I LTR MaLR 43 144 -265 264 195 182 0 chr6 129937025 129937102 -59342452 + MLT1I LTR MaLR 318 408 -1 1327 203 60 65 chr6 129938085 129938469 -59341085 + MLT1B LTR MaLR 5 386 -4 27 62 0 0 chr6 129938497 129938545 -59341009 + AT_rich Low_complexity Low_complexity 1 48 0 467 266 18 78 chr6 129938895 129939113 -59340441 - L2 LINE L2 -10 3303 3099 263 294 34 73 chr6 129939251 129939428 -59340126 - L2 LINE L2 -2387 927 758 22 0 0 0 chr6 129940871 129940893 -59338661 + AT_rich Low_complexity Low_complexity 1 22 0 413 201 11 7 chr6 129941067 129941159 -59338395 + AluS SINE Alu 1 67 -241 2319 36 0 11 chr6 129942448 129942725 -59336829 - AluY SINE Alu 0 311 38 2377 117 0 0 chr6 129943659 129944010 -59335544 - L1PB1 LINE L1 -9 6142 5792 306 0 0 0 chr6 129944011 129944045 -59335509 + (TG)n Simple_repeat Simple_repeat 2 35 0 286 116 70 23 chr6 129944054 129944226 -59335328 + (TA)n Simple_repeat Simple_repeat 1 180 0 4008 167 6 3 chr6 129944247 129945545 -59334009 - L1PB1 LINE L1 -360 5791 4489 505 129 17 17 chr6 129945601 129945696 -59333858 + (CATA)n Simple_repeat Simple_repeat 1 98 -18 2389 129 22 0 chr6 129945696 129946052 -59333502 + THE1B LTR MaLR 1 364 0 505 129 17 17 chr6 129946052 129946072 -59333482 + (CATA)n Simple_repeat Simple_repeat 97 116 0 207 0 0 0 chr6 129946072 129946095 -59333459 + (TG)n Simple_repeat Simple_repeat 2 24 0 4783 184 33 67 chr6 129947164 129948250 -59331304 - L1MC1 LINE L1 -1 6332 5308 1829 108 71 11 chr6 129948250 129948547 -59331007 - AluSc SINE Alu 0 309 1 4783 184 33 67 chr6 129948547 129949247 -59330307 - L1MC1 LINE L1 -1025 5308 4586 254 219 52 83 chr6 129952047 129952143 -59327411 - L2 LINE L2 0 3313 3221 1502 214 95 26 chr6 129953499 129953929 -59325625 + MLT1C LTR MaLR 8 467 0 345 322 114 35 chr6 129954856 129955083 -59324471 - MIR SINE MIR -5 257 13 21 0 0 0 chr6 129955704 129955725 -59323829 + AT_rich Low_complexity Low_complexity 1 21 0 202 338 131 7 chr6 129957252 129957397 -59322157 - L2 LINE L2 -5 3308 3146 24 0 0 0 chr6 129958113 129958137 -59321417 + AT_rich Low_complexity Low_complexity 1 24 0 23792 165 16 24 chr6 129958664 129965070 -59314484 + L1PA10 LINE L1 3 6477 -6 24 32 0 0 chr6 129966379 129966410 -59313144 + AT_rich Low_complexity Low_complexity 1 31 0 341 307 43 14 chr6 129966535 129966675 -59312879 + MER117 DNA MER1_type 1 144 -53 24 0 0 0 chr6 129967116 129967140 -59312414 + AT_rich Low_complexity Low_complexity 1 24 0 307 125 0 0 chr6 129967404 129967452 -59312102 - MLT2D LTR ERVL 0 414 367 192 200 0 0 chr6 129967452 129967497 -59312057 + (TG)n Simple_repeat Simple_repeat 1 45 0 390 213 0 0 chr6 129967497 129967572 -59311982 - MLT2C1 LTR ERVL -41 356 282 639 184 29 7 chr6 129967582 129967718 -59311836 - MLT2D LTR ERVL -275 139 1 1109 295 78 62 chr6 129967874 129968454 -59311100 + MLT1G LTR MaLR 7 590 0 180 300 0 0 chr6 129969058 129969108 -59310446 + L2 LINE L2 3187 3236 -77 291 28 0 0 chr6 129969798 129969834 -59309720 + (TG)n Simple_repeat Simple_repeat 1 36 0 352 246 238 8 chr6 129970158 129970280 -59309274 - MER45C DNA AcHobo -9 944 795 415 244 33 0 chr6 129970350 129970440 -59309114 - MER45C DNA AcHobo -154 799 707 1000 209 0 27 chr6 129970515 129970702 -59308852 - MER45C DNA AcHobo -771 182 1 406 267 62 7 chr6 129970898 129971103 -59308451 + MLT2F LTR ERVL 1 262 -401 * 501 200 200 0 chr6 129971102 129971198 -59308356 + MLT2F LTR ERVL 508 584 -79 441 0 0 0 chr6 129971198 129971247 -59308307 + (CA)n Simple_repeat Simple_repeat 2 50 0 501 200 200 0 chr6 129971247 129971280 -59308274 + MLT2F LTR ERVL 583 663 0 25 51 0 0 chr6 129972754 129972793 -59306761 + AT_rich Low_complexity Low_complexity 1 39 0 11898 141 38 76 chr6 129972848 129973923 -59305631 + Tigger1 DNA MER2_type 91 1205 -1213 761 138 26 0 chr6 129973923 129974039 -59305515 + AluJb SINE Alu 1 119 -193 11898 141 38 76 chr6 129974039 129975268 -59304286 + Tigger1 DNA MER2_type 1205 2418 0 210 159 48 32 chr6 129976857 129976920 -59302634 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 206 302 134 54 chr6 129977319 129977468 -59302086 - L2 LINE L2 -245 3027 2867 5309 176 12 9 chr6 129977599 129978158 -59301396 + L1PA16 LINE L1 4794 5350 -816 2040 96 0 0 chr6 129978158 129978418 -59301136 + AluSg SINE Alu 36 295 -15 5309 176 12 9 chr6 129978418 129979223 -59300331 + L1PA16 LINE L1 5350 6165 -1 8174 191 21 16 chr6 129979929 129982512 -59297042 + L1PA16 LINE L1 3479 6070 -96 13717 199 13 9 chr6 130032512 130035838 -59243716 - L1P5 LINE L1 -528 5623 2285 1568 132 164 0 chr6 130035837 130036176 -59243378 + L1P5 LINE L1 2608 3000 -3862 * 26 30 0 0 chr6 130036419 130036452 -59243102 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr6 130037952 130037990 -59241564 + AT_rich Low_complexity Low_complexity 1 38 0 226 311 2 0 chr6 130038131 130038199 -59241355 - L2 LINE L2 -13 3300 3191 255 316 0 42 chr6 130038857 130038952 -59240602 - MIR3 SINE MIR -46 162 72 1248 164 13 21 chr6 130039966 130040204 -59239350 + L1PA16 LINE L1 5931 6166 0 24 32 0 0 chr6 130040888 130040919 -59238635 + AT_rich Low_complexity Low_complexity 1 31 0 27 62 0 0 chr6 130041783 130041831 -59237723 + AT_rich Low_complexity Low_complexity 1 48 0 205 156 0 0 chr6 130042529 130042561 -59236993 + (TCCA)n Simple_repeat Simple_repeat 2 33 0 670 276 88 44 chr6 130042561 130042880 -59236674 - L2 LINE L2 0 3313 2981 444 235 20 0 chr6 130042920 130043022 -59236532 + MER5A DNA MER1_type 9 112 -77 491 279 42 88 chr6 130045147 130045455 -59234099 - MER102b DNA MER1_type 0 341 48 353 316 53 20 chr6 130046346 130046498 -59233056 + LTR67 LTR ERVL 401 557 0 354 45 0 0 chr6 130046672 130046716 -59232838 + (TTTTG)n Simple_repeat Simple_repeat 5 48 0 188 146 0 21 chr6 130047763 130047811 -59231743 + (CA)n Simple_repeat Simple_repeat 2 48 0 3658 301 84 21 chr6 130047856 130049525 -59230029 - L2 LINE L2 -232 3081 1314 1338 256 80 54 chr6 130049941 130050611 -59228943 + L1ME LINE L1 4423 5116 -1046 2395 68 0 6 chr6 130050611 130050922 -59228632 - AluY SINE Alu -2 309 1 1338 256 80 54 chr6 130050922 130051318 -59228236 + L1ME LINE L1 5116 5500 -662 182 114 0 29 chr6 130051463 130051498 -59228056 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 233 381 16 16 chr6 130051504 130051630 -59227924 + MIR SINE MIR 28 153 -109 222 288 0 15 chr6 130052278 130052344 -59227210 - MIR SINE MIR -138 124 60 576 265 49 19 chr6 130052640 130052802 -59226752 + MIR SINE MIR 30 196 -66 243 241 65 153 chr6 130054348 130054697 -59224857 - L2 LINE L2 -749 2565 2248 384 338 149 0 chr6 130054697 130054851 -59224703 - MER5A DNA MER1_type -1 188 12 2183 137 0 0 chr6 130055086 130055392 -59224162 + AluSx SINE Alu 1 306 -6 327 332 68 26 chr6 130057376 130057566 -59221988 - MIR3 SINE MIR -7 201 4 585 231 35 24 chr6 130058122 130058291 -59221263 + MER5B DNA MER1_type 1 171 -7 643 138 9 9 chr6 130059630 130059746 -59219808 + L1MA5 LINE L1 6180 6295 -5 365 315 47 0 chr6 130060013 130060140 -59219414 + L2 LINE L2 3180 3312 -1 1442 199 16 29 chr6 130060168 130060475 -59219079 + AluJo SINE Alu 10 312 0 1251 176 85 80 chr6 130060627 130060781 -59218773 - L1MA10 LINE L1 -2 6332 6180 357 24 0 0 chr6 130060781 130060823 -59218731 + (TG)n Simple_repeat Simple_repeat 1 42 0 1251 176 85 80 chr6 130060823 130061020 -59218534 - L1MA10 LINE L1 -154 6180 5979 1893 241 45 86 chr6 130061060 130061665 -59217889 - L1ME1 LINE L1 -3 6163 5586 209 216 0 20 chr6 130061665 130061716 -59217838 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 1893 241 45 86 chr6 130061716 130062140 -59217414 - L1ME1 LINE L1 -580 5586 5146 797 221 13 0 chr6 130063749 130063903 -59215651 + FRAM SINE Alu 1 156 -10 426 250 9 18 chr6 130064579 130064691 -59214863 + MIR SINE MIR 125 235 -27 430 344 53 20 chr6 130064883 130065127 -59214427 - MIR SINE MIR -10 252 1 604 250 49 24 chr6 130065357 130065521 -59214033 - MER20 DNA MER1_type -51 168 1 872 266 18 13 chr6 130066196 130066425 -59213129 + MIR SINE MIR 31 260 -2 392 328 29 23 chr6 130066429 130066603 -59212951 - MIR SINE MIR -2 260 86 1436 174 6 118 chr6 130066986 130067342 -59212212 + MLT1B LTR MaLR 3 318 -72 202 358 7 68 chr6 130067578 130067726 -59211828 - L2 LINE L2 -27 3286 3148 2272 102 0 0 chr6 130067972 130068266 -59211288 - AluSq SINE Alu -19 294 1 667 215 31 0 chr6 130068341 130068471 -59211083 - MIR SINE MIR -120 142 9 417 297 176 25 chr6 130068502 130068741 -59210813 - L2 LINE L2 -406 2908 2634 1324 219 136 29 chr6 130068765 130069221 -59210333 - MLT1D LTR MaLR 0 505 1 23 0 0 0 chr6 130069811 130069834 -59209720 + AT_rich Low_complexity Low_complexity 1 23 0 894 162 54 15 chr6 130070563 130070767 -59208787 - L1MA9 LINE L1 0 6312 6101 12838 144 30 9 chr6 130070768 130071853 -59207701 + Tigger1 DNA MER2_type 2 1063 -1355 7709 93 11 5 chr6 130071853 130073754 -59205800 + L1PA7 LINE L1 4226 6151 -3 12838 144 30 9 chr6 130073754 130074988 -59204566 + Tigger1 DNA MER2_type 1063 2418 0 4769 173 25 15 chr6 130074990 130075318 -59204236 - L1MA8 LINE L1 -191 7519 7196 207 0 0 0 chr6 130075318 130075341 -59204213 + (TA)n Simple_repeat Simple_repeat 2 24 0 4769 173 25 15 chr6 130075341 130076838 -59202716 - L1MA8 LINE L1 -514 7196 5673 1188 276 72 30 chr6 130076825 130077422 -59202132 - L1MA8 LINE L1 -4111 3454 2833 * 537 239 56 18 chr6 130077426 130077584 -59201970 - L1PB4 LINE L1 -69 6082 5919 2443 235 138 85 chr6 130077591 130078276 -59201278 - L1M2 LINE L1 -4382 2725 2077 2058 129 6 22 chr6 130078276 130078593 -59200961 - AluSx SINE Alu 0 312 1 2443 235 138 85 chr6 130078593 130078672 -59200882 - L1M2 LINE L1 -5030 2077 2004 2297 169 21 19 chr6 130078672 130079099 -59200455 + MSTA LTR MaLR 1 428 0 2443 235 138 85 chr6 130079099 130080129 -59199425 - L1M2 LINE L1 -5103 2004 1029 1049 86 14 0 chr6 130080129 130080269 -59199285 + MER107 DNA MER1_type 1 142 -55 206 61 0 30 chr6 130080272 130080305 -59199249 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2443 235 138 85 chr6 130080305 130080907 -59198647 - L1M2 LINE L1 -6079 1028 1 312 281 84 49 chr6 130081109 130081312 -59198242 - L2 LINE L2 0 3313 3104 184 325 175 20 chr6 130081462 130081804 -59197750 + L2 LINE L2 1701 2095 -1219 213 275 46 64 chr6 130082064 130082173 -59197381 + L2 LINE L2 2647 2753 -561 213 39 0 0 chr6 130082322 130082348 -59197206 + (A)n Simple_repeat Simple_repeat 1 26 0 370 145 0 43 chr6 130082348 130082417 -59197137 - FLAM SINE Alu -16 117 52 257 246 14 0 chr6 130082419 130082488 -59197066 + MER58 DNA MER1_type 39 108 -107 197 143 0 48 chr6 130082538 130082601 -59196953 + (T)n Simple_repeat Simple_repeat 1 60 0 623 247 123 53 chr6 130083012 130083255 -59196299 - MIR SINE MIR 0 262 3 26 30 0 0 chr6 130083564 130083597 -59195957 + AT_rich Low_complexity Low_complexity 1 33 0 721 320 114 43 chr6 130083694 130084203 -59195351 - L3 LINE CR1 -126 1451 907 250 311 106 33 chr6 130084332 130084483 -59195071 - L3 LINE CR1 -737 840 679 22 0 0 0 chr6 130085301 130085323 -59194231 + AT_rich Low_complexity Low_complexity 1 22 0 316 321 82 38 chr6 130086863 130087047 -59192507 - L2 LINE L2 -202 3070 2879 756 239 111 33 chr6 130087370 130087797 -59191757 - MLT1H LTR MaLR -23 526 4 214 357 51 0 chr6 130089212 130089310 -59190244 + MIR SINE MIR 42 144 -64 537 220 46 0 chr6 130089323 130089432 -59190122 - MER81 DNA DNA 0 114 1 210 259 0 0 chr6 130089956 130090014 -59189540 + T-rich Low_complexity Low_complexity 1 58 0 331 256 86 150 chr6 130090474 130090833 -59188721 - L2 LINE L2 -1 3312 2977 197 367 19 0 chr6 130091367 130091455 -59188099 - MIR SINE MIR -68 140 48 2207 97 30 68 chr6 130091665 130092035 -59187519 - LTR12 LTR ERV1 0 714 359 258 282 39 0 chr6 130092035 130092113 -59187441 - LTR30 LTR ERV1 -98 624 544 590 105 0 0 chr6 130092113 130092199 -59187355 - LTR12 LTR ERV1 -437 277 192 2172 133 0 0 chr6 130092225 130092525 -59187029 - AluSx SINE Alu -10 302 3 1858 123 91 23 chr6 130093185 130093536 -59186018 - THE1C LTR MaLR 0 375 1 2189 209 20 35 chr6 130093732 130094240 -59185314 + MLT1D LTR MaLR 6 505 0 403 389 35 8 chr6 130094447 130094704 -59184850 + HERVL LTR ERVL 3140 3403 -2251 690 350 76 22 chr6 130094977 130095571 -59183983 + HERVL LTR ERVL 3873 4498 -1156 360 0 0 0 chr6 130096350 130096390 -59183164 + (TG)n Simple_repeat Simple_repeat 2 41 0 238 204 0 20 chr6 130097056 130097105 -59182449 + LTR67 LTR ERVL 509 556 -1 211 265 0 0 chr6 130097546 130097595 -59181959 + (CCA)n Simple_repeat Simple_repeat 1 49 0 14801 183 25 6 chr6 130098245 130098599 -59180955 - L1PB1 LINE L1 0 6867 6521 306 73 0 0 chr6 130098599 130098640 -59180914 + (TG)n Simple_repeat Simple_repeat 2 42 0 14801 183 25 6 chr6 130098640 130099638 -59179916 - L1PB1 LINE L1 -346 6521 5543 261 0 0 0 chr6 130099638 130099667 -59179887 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 14801 183 25 6 chr6 130099667 130103447 -59176107 - L1PB1 LINE L1 -1324 5543 1632 205 88 29 0 chr6 130153948 130153982 -59125572 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 573 254 59 59 chr6 130154138 130154493 -59125061 + L1MEd LINE L1 591 945 -5174 1096 282 58 34 chr6 130154605 130155020 -59124534 + LTR16A LTR ERVL 16 440 -10 316 152 0 61 chr6 130155586 130155652 -59123902 + AluJ/FRAM SINE Alu 232 293 -9 630 202 16 0 chr6 130156191 130156315 -59123239 - L2 LINE L2 -6 3307 3182 502 299 0 0 chr6 130156379 130156506 -59123048 + L2 LINE L2 3186 3312 -1 1052 107 0 0 chr6 130157071 130157220 -59122334 + AluSc SINE Alu 161 309 0 18575 50 4 1 chr6 130158123 130160506 -59119048 + L1P LINE L1 2390 4780 -1366 560 258 82 56 chr6 130160678 130161034 -59118520 + L1ME LINE L1 5296 5660 -461 870 169 42 0 chr6 130161744 130161910 -59117644 + L1MA6 LINE L1 5890 6062 -238 932 152 58 86 chr6 130161917 130162174 -59117380 + L1MB8 LINE L1 5928 6177 -1 339 229 46 53 chr6 130162255 130162386 -59117168 + L1M4 LINE L1 4302 4431 -1715 206 98 49 16 chr6 130162403 130162464 -59117090 + (TA)n Simple_repeat Simple_repeat 2 64 0 230 254 0 0 chr6 130162754 130162809 -59116745 + MIR3 SINE MIR 153 207 -1 211 324 38 19 chr6 130163152 130163257 -59116297 - MIR SINE MIR -110 152 46 626 147 44 118 chr6 130163426 130163522 -59116032 + MER53 DNA DNA 1 76 -113 2241 186 215 91 chr6 130163522 130163733 -59115821 + LTR28 LTR ERV1 1 1020 0 2267 171 135 115 chr6 130163733 130164430 -59115124 + LTR28 LTR ERV1 310 1020 0 626 147 44 118 chr6 130164430 130164537 -59115017 + MER53 DNA DNA 76 189 0 7527 169 29 21 chr6 130165413 130166981 -59112573 - L1 LINE L1 -787 5359 3779 22 35 0 0 chr6 130168620 130168649 -59110905 + AT_rich Low_complexity Low_complexity 1 29 0 2349 58 10 7 chr6 130168679 130168971 -59110583 + AluY SINE Alu 1 293 -18 2485 200 25 25 chr6 130169274 130169349 -59110205 - MLT2B1 LTR ERVL 0 520 446 201 39 0 0 chr6 130169349 130169375 -59110179 + (GA)n Simple_repeat Simple_repeat 1 26 0 2485 200 25 25 chr6 130169375 130169819 -59109735 - MLT2B1 LTR ERVL -73 447 1 233 356 87 9 chr6 130170939 130171054 -59108500 + L2 LINE L2 3143 3266 -6 314 265 19 123 chr6 130171840 130171881 -59107673 - HAL1 LINE L1 -148 2359 2315 1726 153 63 38 chr6 130171881 130172247 -59107307 - THE1C LTR MaLR 0 375 1 314 265 19 123 chr6 130172247 130172367 -59107187 - HAL1 LINE L1 -192 2315 2215 257 297 14 0 chr6 130172370 130172444 -59107110 + (CATA)n Simple_repeat Simple_repeat 2 76 0 282 103 0 0 chr6 130172528 130172567 -59106987 + MADE1 DNA Mariner 42 80 0 1328 259 138 31 chr6 130172650 130173202 -59106352 - HAL1 LINE L1 -512 1995 1385 792 222 0 0 chr6 130173209 130173362 -59106192 - AluJb SINE Alu -19 293 141 2322 262 127 36 chr6 130173463 130174649 -59104905 - HAL1 LINE L1 -1149 1358 65 687 218 0 0 chr6 130176801 130176925 -59102629 + FLAM_C SINE Alu 1 124 -19 237 292 42 52 chr6 130178315 130178411 -59101143 - MIR SINE MIR -64 144 50 30 27 0 0 chr6 130178677 130178714 -59100840 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr6 130180459 130180487 -59099067 + AT_rich Low_complexity Low_complexity 1 28 0 2366 93 0 0 chr6 130180526 130180827 -59098727 - AluY SINE Alu -10 301 1 478 253 137 0 chr6 130181088 130181234 -59098320 + L2 LINE L2 2393 2558 -756 322 290 118 43 chr6 130181416 130181754 -59097800 + MLT1L LTR MaLR 113 412 -99 1977 132 31 0 chr6 130182246 130182535 -59097019 + AluSx SINE Alu 1 298 -14 2018 122 43 27 chr6 130182829 130183198 -59096356 - THE1C LTR MaLR 0 375 1 385 244 61 0 chr6 130185590 130185705 -59093849 - MER103 DNA DNA -2 164 43 279 236 302 0 chr6 130186667 130186773 -59092781 + MIR SINE MIR 1 138 -124 1090 202 90 4 chr6 130186774 130187041 -59092513 + L1ME2 LINE L1 5630 5919 -245 789 284 113 62 chr6 130187102 130187535 -59092019 - LTR16B LTR ERVL -6 458 4 514 236 20 61 chr6 130187546 130187753 -59091801 + L1ME2 LINE L1 5979 6332 -2 2183 116 0 0 chr6 130188345 130188638 -59090916 - AluSx SINE Alu -19 293 1 1716 168 30 20 chr6 130188985 130189283 -59090271 + AluJb SINE Alu 2 302 -10 406 293 109 6 chr6 130190930 130191104 -59088450 - L2 LINE L2 -4 3309 3118 264 255 166 25 chr6 130191125 130191282 -59088272 - MIR SINE MIR 0 262 84 466 267 28 44 chr6 130191311 130191491 -59088063 - L2 LINE L2 0 3313 3137 807 219 122 15 chr6 130191491 130191687 -59087867 + MLT1D LTR MaLR 288 504 -1 1309 213 3 7 chr6 130192057 130192367 -59087187 + AluSq SINE Alu 4 312 -1 2006 139 37 37 chr6 130194089 130194464 -59085090 - THE1C LTR MaLR 0 375 1 294 237 62 0 chr6 130194695 130194792 -59084762 - L1ME LINE L1 -514 6105 6003 917 221 51 0 chr6 130194814 130195009 -59084545 + MER3 DNA MER1_type 1 205 -4 413 313 35 71 chr6 130195265 130195604 -59083950 - L1ME LINE L1 -1721 4923 4597 22 35 0 0 chr6 130195746 130195775 -59083779 + AT_rich Low_complexity Low_complexity 1 29 0 4948 224 54 69 chr6 130195806 130197579 -59081975 - L1ME LINE L1 -4490 2335 421 1453 187 15 8 chr6 130197579 130197846 -59081708 + AluJo SINE Alu 18 286 -26 4948 224 54 69 chr6 130197846 130198239 -59081315 - L1ME LINE L1 -6404 421 24 29 60 0 0 chr6 130198855 130198905 -59080649 + AT_rich Low_complexity Low_complexity 1 50 0 1867 148 7 14 chr6 130199696 130199987 -59079567 - AluJb SINE Alu -22 290 2 659 254 0 64 chr6 130200551 130200724 -59078830 + MER58C DNA MER1_type 54 215 0 1099 192 14 52 chr6 130201043 130201329 -59078225 + L1M4 LINE L1 3426 3700 -2446 1808 153 14 0 chr6 130201418 130201693 -59077861 + AluSx SINE Alu 5 283 -29 193 227 23 0 chr6 130201924 130201968 -59077586 - L2 LINE L2 -4 3268 3224 346 353 18 47 chr6 130202587 130202757 -59076797 - MIR3 SINE MIR -7 201 37 831 247 32 4 chr6 130203801 130204048 -59075506 - L1M4 LINE L1 -3575 2571 2318 2034 142 0 0 chr6 130205919 130206227 -59073327 - AluSq SINE Alu 0 308 1 1717 318 65 28 chr6 130207896 130209037 -59070517 + HERV16 LTR ERVL 191 1387 -3609 2276 92 0 0 chr6 130209157 130209464 -59070090 + AluSg1 SINE Alu 1 307 0 278 346 29 0 chr6 130209480 130209584 -59069970 + HERV16 LTR ERVL 1472 1578 -3418 652 299 20 69 chr6 130209951 130210255 -59069299 + HERV16 LTR ERVL 2070 2358 -3296 1390 343 58 22 chr6 130210290 130210947 -59068607 + HERV16 LTR ERVL 2460 3139 -1911 260 333 10 10 chr6 130211188 130211287 -59068267 + LTR40b LTR ERVL 185 283 -179 342 371 7 0 chr6 130211403 130211554 -59068000 + HERV16 LTR ERVL 3226 3377 -2387 235 380 85 27 chr6 130211596 130211891 -59067663 - L2 LINE L2 -2792 522 211 312 328 52 20 chr6 130212656 130212906 -59066648 - MIR SINE MIR -3 259 2 937 248 75 92 chr6 130213430 130213854 -59065700 + MLT1G3 LTR MaLR 1 417 -178 281 221 46 8 chr6 130214005 130214136 -59065418 + (TA)n Simple_repeat Simple_repeat 2 137 0 213 344 75 11 chr6 130214141 130214234 -59065320 + L2 LINE L2 3174 3272 0 833 167 29 35 chr6 130215030 130215204 -59064350 + L1MD1 LINE L1 6065 6237 -5 323 320 62 8 chr6 130215240 130215368 -59064186 - MIR3 SINE MIR -11 197 63 2364 90 7 0 chr6 130215634 130215944 -59063610 + AluSq SINE Alu 1 312 -1 327 25 0 0 chr6 130216419 130216459 -59063095 + (CAA)n Simple_repeat Simple_repeat 3 42 0 310 267 68 41 chr6 130216781 130216927 -59062627 + MIR3 SINE MIR 52 201 -7 589 13 0 25 chr6 130217269 130217348 -59062206 + L1PA2 LINE L1 6078 6154 -1 1614 140 71 23 chr6 130217419 130217727 -59061827 + THE1C LTR MaLR 1 323 -52 691 269 113 18 chr6 130220490 130220634 -59058920 + L1MC4 LINE L1 7735 7864 -178 330 98 0 0 chr6 130220634 130220685 -59058869 + (CA)n Simple_repeat Simple_repeat 2 52 0 691 269 113 18 chr6 130220685 130220815 -59058739 + L1MC4 LINE L1 7864 8035 -7 375 285 93 26 chr6 130221065 130221216 -59058338 - MLT1J2 LTR MaLR -289 161 1 253 363 9 9 chr6 130221266 130221379 -59058175 - L2 LINE L2 -2 3270 3158 267 51 0 0 chr6 130222113 130222152 -59057402 - Alu SINE Alu -2 300 262 286 331 24 8 chr6 130222542 130222666 -59056888 + MIR SINE MIR 19 144 -64 30 27 0 0 chr6 130222824 130222861 -59056693 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr6 130222990 130223018 -59056536 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr6 130223260 130223293 -59056261 + AT_rich Low_complexity Low_complexity 1 33 0 281 265 15 15 chr6 130224397 130224465 -59055089 - MIR SINE MIR -87 121 54 213 154 0 0 chr6 130224960 130224999 -59054555 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 24 67 0 0 chr6 130225336 130225381 -59054173 + AT_rich Low_complexity Low_complexity 1 45 0 12778 228 24 41 chr6 130227775 130230744 -59048810 - L1PB1 LINE L1 -5 6210 3172 660 107 0 27 chr6 130230744 130230856 -59048698 - AluSq/x SINE Alu -198 115 7 12778 228 24 41 chr6 130230856 130232453 -59047101 - L1PB1 LINE L1 -3043 3172 1551 1684 181 6 0 chr6 130233615 130233953 -59045601 - L1 LINE L1 -1249 4897 4558 275 284 100 113 chr6 130233956 130234266 -59045288 + L2 LINE L2 2910 3215 -57 24 32 0 0 chr6 130235321 130235352 -59044202 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr6 130235361 130235383 -59044171 + AT_rich Low_complexity Low_complexity 1 22 0 2027 100 0 88 chr6 130235666 130236005 -59043549 + AluSg SINE Alu 1 309 -1 242 292 108 39 chr6 130236461 130236591 -59042963 - LTR16C LTR ERVL -4 487 349 204 225 0 0 chr6 130238403 130238443 -59041111 + (TG)n Simple_repeat Simple_repeat 2 41 0 1714 157 10 7 chr6 130238672 130238965 -59040589 + AluSx SINE Alu 1 294 -18 1519 133 16 35 chr6 130239357 130239496 -59040058 + MER2 DNA MER2_type 1 134 -211 1492 116 122 66 chr6 130239496 130239815 -59039739 + MER1B DNA MER1_type 1 337 0 1519 133 16 35 chr6 130239815 130239930 -59039624 + MER2 DNA MER2_type 134 250 -95 3270 202 14 53 chr6 130239932 130240424 -59039130 + L1MA9 LINE L1 5494 5943 -369 2147 126 3 0 chr6 130240424 130240725 -59038829 + AluSq SINE Alu 1 302 -11 3270 202 14 53 chr6 130240725 130241059 -59038495 + L1MA9 LINE L1 5943 6288 -24 22 0 0 0 chr6 130241942 130241964 -59037590 + AT_rich Low_complexity Low_complexity 1 22 0 1392 142 0 19 chr6 130242872 130243083 -59036471 - AluSg/x SINE Alu -19 293 87 2281 78 10 7 chr6 130243614 130243909 -59035645 + AluSc SINE Alu 1 296 -13 203 362 87 8 chr6 130244347 130244474 -59035080 + L2 LINE L2 3136 3272 0 440 286 157 11 chr6 130245338 130245523 -59034031 + MIR SINE MIR 43 254 -8 187 283 0 17 chr6 130246104 130246164 -59033390 - L2 LINE L2 -6 3307 3249 389 305 193 18 chr6 130246667 130246890 -59032664 + MIR SINE MIR 1 262 0 296 217 87 0 chr6 130248390 130248459 -59031095 - L2 LINE L2 0 3272 3198 180 111 0 0 chr6 130248501 130248528 -59031026 + (A)n Simple_repeat Simple_repeat 1 27 0 1966 107 46 4 chr6 130249191 130249471 -59030083 + AluY SINE Alu 1 292 -19 182 156 0 0 chr6 130251341 130251373 -59028181 + A-rich Low_complexity Low_complexity 1 32 0 46 54 0 0 chr6 130251477 130251551 -59028003 + AT_rich Low_complexity Low_complexity 1 74 0 38 61 0 0 chr6 130251899 130251965 -59027589 + AT_rich Low_complexity Low_complexity 1 66 0 25 0 0 0 chr6 130252742 130252767 -59026787 + AT_rich Low_complexity Low_complexity 1 25 0 323 348 111 32 chr6 130254198 130254451 -59025103 - L2 LINE L2 -338 2976 2704 222 211 19 0 chr6 130254486 130254538 -59025016 + (CAA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr6 130255010 130255031 -59024523 + AT_rich Low_complexity Low_complexity 1 21 0 711 210 66 31 chr6 130256138 130256395 -59023159 - LTR37B LTR ERV1 -5 463 198 495 246 76 18 chr6 130256556 130256727 -59022827 - LTR37B LTR ERV1 -281 187 7 1702 152 3 21 chr6 130256758 130257067 -59022487 + AluSx SINE Alu 5 312 0 273 197 0 0 chr6 130257148 130257219 -59022335 + (TA)n Simple_repeat Simple_repeat 2 72 0 440 297 7 35 chr6 130258028 130258173 -59021381 - MER5A DNA MER1_type -14 175 35 196 340 85 11 chr6 130258717 130258811 -59020743 - L2 LINE L2 -3 3269 3169 402 21 0 0 chr6 130259334 130259381 -59020173 + (TG)n Simple_repeat Simple_repeat 1 47 0 2173 112 0 0 chr6 130260924 130261220 -59018334 - AluSx SINE Alu -16 296 1 181 361 105 8 chr6 130262899 130263032 -59016522 + MIR SINE MIR 11 156 -106 194 295 146 84 chr6 130263324 130264077 -59015477 + L2 LINE L2 1699 2498 -816 1574 239 106 16 chr6 130264086 130264530 -59015024 + LTR40a LTR ERVL 32 515 -4 2173 97 3 0 chr6 130264800 130265090 -59014464 - AluSc SINE Alu -18 291 1 276 214 36 0 chr6 130265251 130265307 -59014247 + MIR SINE MIR 204 261 -1 294 29 0 0 chr6 130265642 130265677 -59013877 + (CA)n Simple_repeat Simple_repeat 2 36 0 239 54 27 0 chr6 130266270 130266307 -59013247 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 231 217 17 0 chr6 130266533 130266593 -59012961 + L1MC4 LINE L1 6642 6702 -1340 344 198 0 12 chr6 130266593 130266619 -59012935 + (TA)n Simple_repeat Simple_repeat 1 85 0 412 290 43 9 chr6 130266814 130267000 -59012554 + MIR SINE MIR 3 262 0 2586 58 0 3 chr6 130267833 130268144 -59011410 + AluY SINE Alu 1 310 -1 1831 176 0 10 chr6 130268956 130269257 -59010297 + AluJo SINE Alu 4 301 -11 198 150 0 0 chr6 130269713 130269753 -59009801 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 30 0 0 chr6 130270056 130270089 -59009465 + AT_rich Low_complexity Low_complexity 1 33 0 537 177 35 9 chr6 130270697 130270810 -59008744 - U5 snRNA snRNA 0 116 1 2091 194 55 2 chr6 130271453 130271891 -59007663 + MER65C LTR ERV1 1 461 0 184 243 14 54 chr6 130272152 130272226 -59007328 - MER5A DNA MER1_type -108 81 11 24 0 0 0 chr6 130272241 130272265 -59007289 + AT_rich Low_complexity Low_complexity 1 24 0 1640 187 18 26 chr6 130273459 130273801 -59005753 - MER44D DNA MER2_type 0 609 1 760 264 59 34 chr6 130273881 130274321 -59005233 - L1MC5 LINE L1 -202 7759 7309 1565 109 13 4 chr6 130274334 130274597 -59004957 - AluSc SINE Alu 0 309 65 2420 162 25 7 chr6 130274856 130275289 -59004265 - MER6 DNA MER2_type 0 865 165 228 206 238 0 chr6 130275733 130275796 -59003758 - MER103 DNA DNA -67 99 22 222 91 0 0 chr6 130275821 130275854 -59003700 + (TC)n Simple_repeat Simple_repeat 2 34 0 198 0 0 0 chr6 130275853 130275875 -59003679 + (T)n Simple_repeat Simple_repeat 1 22 0 * 24 0 0 0 chr6 130276085 130276109 -59003445 + AT_rich Low_complexity Low_complexity 1 24 0 398 234 13 0 chr6 130277090 130277167 -59002387 + MER21B LTR ERV1 13 90 -773 2517 219 90 65 chr6 130277189 130277993 -59001561 + MER21B LTR ERV1 19 842 -21 819 265 42 0 chr6 130278298 130278513 -59001041 - MIR SINE MIR -26 236 13 264 77 0 0 chr6 130278712 130278751 -59000803 + (CA)n Simple_repeat Simple_repeat 2 40 0 209 235 0 10 chr6 130278753 130278855 -59000699 + (TA)n Simple_repeat Simple_repeat 1 101 0 2237 106 3 7 chr6 130278861 130279163 -59000391 - AluSx SINE Alu -11 301 1 492 262 35 7 chr6 130280324 130280469 -58999085 + MIR SINE MIR 101 249 -13 240 35 0 0 chr6 130285232 130285261 -58994293 + (CAA)n Simple_repeat Simple_repeat 2 30 0 288 0 0 0 chr6 130285502 130285534 -58994020 + (TG)n Simple_repeat Simple_repeat 2 33 0 21 36 0 0 chr6 130285702 130285730 -58993824 + AT_rich Low_complexity Low_complexity 1 28 0 1819 61 4 0 chr6 130285730 130285961 -58993593 - L1PA6 LINE L1 -2 6152 5921 21 0 0 0 chr6 130286061 130286082 -58993472 + AT_rich Low_complexity Low_complexity 1 21 0 294 294 124 40 chr6 130286097 130286274 -58993280 + MIR SINE MIR 37 228 -34 24 0 0 0 chr6 130286355 130286379 -58993175 + AT_rich Low_complexity Low_complexity 1 24 0 2300 107 0 3 chr6 130286463 130286772 -58992782 + AluSg SINE Alu 3 310 0 22 0 0 0 chr6 130287532 130287554 -58992000 + AT_rich Low_complexity Low_complexity 1 22 0 6916 97 27 0 chr6 130287780 130288781 -58990773 - L1MA2 LINE L1 0 6304 5277 455 227 0 102 chr6 130289247 130289375 -58990179 - FLAM_A SINE Alu -17 116 2 345 333 17 17 chr6 130289512 130289632 -58989922 - L1MEd LINE L1 -5495 624 505 829 124 0 0 chr6 130290105 130290218 -58989336 + AluSg SINE Alu 1 113 -197 2199 96 3 7 chr6 130290233 130290525 -58989029 + AluSx SINE Alu 1 291 -21 2247 141 17 11 chr6 130290688 130291050 -58988504 + THE1B LTR MaLR 1 364 0 613 248 53 0 chr6 130291061 130291194 -58988360 + L2 LINE L2 1164 1303 -2011 797 222 43 48 chr6 130291203 130291342 -58988212 - MER3 DNA MER1_type -1 208 69 2191 193 43 22 chr6 130291342 130291835 -58987719 + MLT1D LTR MaLR 3 505 0 797 222 43 48 chr6 130291835 130291902 -58987652 - MER3 DNA MER1_type -140 69 3 1071 274 38 35 chr6 130291965 130292333 -58987221 + L2 LINE L2 2153 2521 -793 1688 232 22 56 chr6 130292334 130292782 -58986772 - MER21B LTR ERV1 -399 464 32 486 257 0 0 chr6 130292807 130292912 -58986642 + L2 LINE L2 2521 2625 -689 567 321 60 53 chr6 130293067 130293385 -58986169 - LTR33A LTR ERVL -200 323 4 830 268 35 75 chr6 130293387 130293808 -58985746 + L2 LINE L2 2623 3038 -275 817 227 120 5 chr6 130294674 130294890 -58984664 + MLT1H LTR MaLR 13 253 -296 483 247 48 108 chr6 130294912 130295078 -58984476 + MLT1H LTR MaLR 375 535 -14 21 36 0 0 chr6 130297508 130297536 -58982018 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 130298104 130298132 -58981422 + AT_rich Low_complexity Low_complexity 1 28 0 397 385 8 20 chr6 130298357 130298606 -58980948 + L1M4 LINE L1 4065 4310 -1836 467 262 90 34 chr6 130299024 130299099 -58980455 + HAL1 LINE L1 1401 1470 -1037 2559 110 53 12 chr6 130299099 130299516 -58980038 - MER61C LTR ERV1 0 434 1 467 262 90 34 chr6 130299516 130299673 -58979881 + HAL1 LINE L1 1470 1646 -861 4423 97 70 139 chr6 130300138 130301314 -58978240 + pTR5 LTR ERV1 31 714 0 311 274 121 31 chr6 130301433 130301820 -58977734 + L1M4 LINE L1 2206 2627 -3519 198 103 0 0 chr6 130302265 130302294 -58977260 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr6 130302455 130302485 -58977069 + AT_rich Low_complexity Low_complexity 1 30 0 252 143 0 0 chr6 130302621 130302663 -58976891 + (TA)n Simple_repeat Simple_repeat 1 42 0 249 33 0 0 chr6 130302664 130302694 -58976860 + (CA)n Simple_repeat Simple_repeat 2 31 0 31315 102 21 31 chr6 130302694 130305277 -58974277 - L1PA7 LINE L1 -20 6449 3841 3091 165 23 14 chr6 130305277 130305852 -58973702 + LTR22 LTR ERVK 1 580 0 31315 102 21 31 chr6 130305852 130309643 -58969911 - L1PA7 LINE L1 -2628 3841 10 730 154 23 0 chr6 130310040 130310170 -58969384 + L1MA4 LINE L1 4800 4932 -1214 1530 167 64 19 chr6 130310173 130310437 -58969117 + AluSx SINE Alu 1 276 -36 325 58 39 0 chr6 130310448 130310500 -58969054 + (GGAAA)n Simple_repeat Simple_repeat 5 58 0 195 129 0 0 chr6 130310506 130310537 -58969017 + (GA)n Simple_repeat Simple_repeat 2 32 0 5400 166 29 14 chr6 130310537 130310581 -58968973 + L1MA4 LINE L1 4920 4962 -1338 2176 133 0 0 chr6 130310581 130310883 -58968671 + AluSg SINE Alu 1 302 -8 5400 166 29 14 chr6 130310883 130312207 -58967347 + L1MA4 LINE L1 4962 6299 -1 334 180 0 34 chr6 130312260 130312349 -58967205 - L1MA8 LINE L1 -1 6290 6205 523 169 0 0 chr6 130312792 130312881 -58966673 + LTR40b LTR ERVL 369 457 -5 451 177 76 86 chr6 130312887 130313085 -58966469 + L1ME2 LINE L1 5963 6158 -6 488 176 10 0 chr6 130313503 130313605 -58965949 + (TA)n Simple_repeat Simple_repeat 2 104 0 2484 84 0 0 chr6 130313608 130313919 -58965635 - AluY SINE Alu 0 311 1 583 247 11 23 chr6 130314384 130314558 -58964996 - MER112 DNA MER1_type -88 172 1 26 0 0 0 chr6 130317805 130317831 -58961723 + AT_rich Low_complexity Low_complexity 1 26 0 248 267 13 104 chr6 130318612 130318802 -58960752 - HAL1b LINE L1 -870 758 622 1540 248 46 22 chr6 130318802 130319258 -58960296 + MLT1C LTR MaLR 1 467 0 248 267 13 104 chr6 130319258 130319290 -58960264 - HAL1b LINE L1 -1006 622 589 239 0 32 0 chr6 130319520 130319551 -58960003 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 313 292 38 70 chr6 130319552 130319737 -58959817 - HAL1 LINE L1 -2323 464 286 24 0 0 0 chr6 130319744 130319768 -58959786 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr6 130320464 130320488 -58959066 + AT_rich Low_complexity Low_complexity 1 24 0 601 306 81 78 chr6 130321122 130321726 -58957828 - L1MDa LINE L1 -4434 2106 1501 24 32 0 0 chr6 130323655 130323686 -58955868 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr6 130323702 130323726 -58955828 + AT_rich Low_complexity Low_complexity 1 24 0 1517 187 80 37 chr6 130324781 130325155 -58954399 + MLT1B LTR MaLR 1 390 0 226 235 0 20 chr6 130325278 130325329 -58954225 + CT-rich Low_complexity Low_complexity 2 51 0 1683 141 34 48 chr6 130325570 130325861 -58953693 - AluSx SINE Alu -22 290 4 299 80 40 0 chr6 130326207 130326257 -58953297 + GA-rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr6 130326317 130326347 -58953207 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr6 130327874 130327911 -58951643 + AT_rich Low_complexity Low_complexity 1 37 0 21 95 0 0 chr6 130328571 130328634 -58950920 + AT_rich Low_complexity Low_complexity 1 63 0 2046 119 18 0 chr6 130328638 130328923 -58950631 - AluSq SINE Alu -17 296 7 39 88 0 0 chr6 130328936 130329038 -58950516 + AT_rich Low_complexity Low_complexity 1 102 0 208 222 0 0 chr6 130330012 130330057 -58949497 + (CA)n Simple_repeat Simple_repeat 1 45 0 22 35 0 0 chr6 130330114 130330143 -58949411 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr6 130330347 130330375 -58949179 + AT_rich Low_complexity Low_complexity 1 28 0 17059 48 3 1 chr6 130330978 130333132 -58946422 - L1PA5 LINE L1 -1098 5048 2889 7241 42 7 0 chr6 130333132 130334222 -58945332 + L1PA5 LINE L1 5051 6146 -8 38 0 0 0 chr6 130334222 130334260 -58945294 + AT_rich Low_complexity Low_complexity 1 38 0 1995 141 0 0 chr6 130335203 130335502 -58944052 - AluSx SINE Alu -13 299 1 181 269 43 65 chr6 130335580 130335673 -58943881 - L3 LINE CR1 -354 1223 1133 263 227 29 122 chr6 130335934 130336106 -58943448 + MER103 DNA DNA 2 157 -9 502 297 206 20 chr6 130337086 130337440 -58942114 - L3 LINE CR1 -731 846 427 263 283 43 11 chr6 130337684 130337776 -58941778 + MIR SINE MIR 45 139 -69 439 127 0 0 chr6 130338855 130338934 -58940620 - L1PB4 LINE L1 0 6156 6078 342 294 51 28 chr6 130338971 130339148 -58940406 + HAL1b LINE L1 252 432 -916 504 307 29 29 chr6 130339258 130339535 -58940019 - L1MC4 LINE L1 -60 7982 7706 218 179 0 0 chr6 130340020 130340059 -58939495 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 422 163 34 88 chr6 130340348 130340495 -58939059 + L1PB4 LINE L1 3178 3316 -2830 8475 202 19 6 chr6 130340512 130343216 -58936338 + L1PB4 LINE L1 3442 6299 -3 2033 255 52 31 chr6 130343916 130344684 -58934870 + L1ME LINE L1 3275 4058 -2088 395 232 87 46 chr6 130344721 130344962 -58934592 + L1ME2 LINE L1 498 748 -5322 * 3090 199 62 3 chr6 130344941 130345633 -58933921 + L1ME2 LINE L1 5254 5986 -112 258 232 200 11 chr6 130345641 130345736 -58933818 + FLAM_C SINE Alu 9 121 -12 359 223 78 0 chr6 130345740 130345843 -58933711 + L1ME2 LINE L1 5973 6083 -15 369 0 0 0 chr6 130346016 130346057 -58933497 + (CA)n Simple_repeat Simple_repeat 2 42 0 189 121 0 0 chr6 130346168 130346201 -58933353 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 6980 21 1 6 chr6 130346217 130347036 -58932518 - L1PA3 LINE L1 0 6155 5341 319 232 36 196 chr6 130347736 130347960 -58931594 + MIR SINE MIR 1 188 -74 248 315 11 0 chr6 130348343 130348432 -58931122 + L1ME LINE L1 5043 5132 -1014 493 129 12 0 chr6 130348448 130348533 -58931021 + GA-rich Low_complexity Low_complexity 2 87 0 1346 252 39 23 chr6 130349679 130350116 -58929438 - MLT1C LTR MaLR -23 444 1 1077 232 140 21 chr6 130350258 130350637 -58928917 + L2 LINE L2 2844 3267 -46 184 208 62 21 chr6 130350711 130350759 -58928795 - L2 LINE L2 -2 3311 3262 402 305 98 0 chr6 130350881 130351045 -58928509 - MIR SINE MIR -35 227 48 256 250 0 0 chr6 130351652 130351704 -58927850 - MER21B LTR ERV1 -774 89 38 * 1735 204 128 7 chr6 130351687 130352195 -58927359 + MER21B LTR ERV1 38 670 -193 269 340 38 19 chr6 130352221 130352380 -58927174 + L1ME LINE L1 5575 5736 -385 21 36 0 0 chr6 130353477 130353505 -58926049 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr6 130354166 130354197 -58925357 + AT_rich Low_complexity Low_complexity 1 31 0 1243 292 44 26 chr6 130354853 130355350 -58924204 - L2 LINE L2 -431 2883 2378 1637 141 14 0 chr6 130355376 130355652 -58923902 + L1MA4 LINE L1 6009 6288 -12 427 292 15 15 chr6 130355660 130355790 -58923764 - L2 LINE L2 -1356 1958 1829 869 196 89 107 chr6 130355790 130356330 -58923224 + L1MC5 LINE L1 7397 7926 -35 315 259 167 12 chr6 130356340 130356502 -58923052 - L2 LINE L2 -1468 1846 1660 27 0 0 0 chr6 130358773 130358800 -58920754 + AT_rich Low_complexity Low_complexity 1 27 0 33 73 0 0 chr6 130359522 130359590 -58919964 + AT_rich Low_complexity Low_complexity 1 68 0 198 103 0 0 chr6 130361231 130361260 -58918294 + (A)n Simple_repeat Simple_repeat 1 29 0 352 301 93 9 chr6 130361785 130362001 -58917553 - L1ME1 LINE L1 -241 5925 5692 36 77 0 0 chr6 130362142 130362220 -58917334 + AT_rich Low_complexity Low_complexity 1 78 0 6393 114 7 11 chr6 130362743 130364407 -58915147 + L1P3 LINE L1 9 2836 -3625 14266 95 5 1 chr6 130364509 130366566 -58912988 + L1P3 LINE L1 3033 5098 -1363 2239 112 0 3 chr6 130367358 130367663 -58911891 - AluSc SINE Alu -5 304 1 495 254 93 39 chr6 130368009 130368633 -58910921 - L1MDb LINE L1 -4703 1681 1030 403 284 234 44 chr6 130369832 130370395 -58909159 - L2 LINE L2 -942 2372 1703 204 338 113 0 chr6 130370488 130370568 -58908986 + MIR SINE MIR 21 109 -153 307 276 78 133 chr6 130371019 130371312 -58908242 + L2 LINE L2 2996 3272 0 2190 106 0 3 chr6 130372469 130372761 -58906793 - AluSc SINE Alu -8 301 11 21 0 0 0 chr6 130372990 130373011 -58906543 + AT_rich Low_complexity Low_complexity 1 21 0 612 289 114 18 chr6 130373414 130373642 -58905912 + MIR SINE MIR 2 251 -11 25 0 0 0 chr6 130373942 130373967 -58905587 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr6 130374322 130374354 -58905200 + AT_rich Low_complexity Low_complexity 1 32 0 947 183 41 0 chr6 130374809 130375006 -58904548 + MER3 DNA MER1_type 5 209 0 548 267 80 0 chr6 130375318 130375468 -58904086 - MIR SINE MIR -53 209 48 22 35 0 0 chr6 130375616 130375645 -58903909 + AT_rich Low_complexity Low_complexity 1 29 0 419 283 53 5 chr6 130375767 130376049 -58903505 + MER20B DNA MER1_type 8 338 -445 1464 218 151 45 chr6 130376049 130376720 -58902834 - HsTC2a DNA Tc2 -2 742 1 1029 250 129 5 chr6 130376720 130377114 -58902440 + MER20B DNA MER1_type 334 777 -6 7986 54 0 14 chr6 130377297 130379087 -58900467 + L1PA5 LINE L1 4378 6154 0 705 316 25 4 chr6 130379111 130379348 -58900206 + MIR SINE MIR 21 262 0 2186 90 0 0 chr6 130379750 130380029 -58899525 + AluSx SINE Alu 1 279 -33 342 0 0 0 chr6 130380029 130380067 -58899487 + (CAA)n Simple_repeat Simple_repeat 2 39 0 272 276 0 0 chr6 130380331 130380407 -58899147 + MIR SINE MIR 66 141 -121 255 308 51 0 chr6 130381873 130381951 -58897603 - L2 LINE L2 -38 3234 3153 1509 147 82 98 chr6 130382169 130382610 -58896944 - MLT1D LTR MaLR 0 505 72 325 237 105 0 chr6 130383282 130383396 -58896158 + L1MEc LINE L1 29 154 -6242 296 348 0 0 chr6 130384282 130384420 -58895134 + GA-rich Low_complexity Low_complexity 2 139 0 2193 44 4 25 chr6 130385659 130385933 -58893621 - AluSg SINE Alu -4 306 39 2255 87 7 3 chr6 130387777 130388075 -58891479 - AluY SINE Alu -12 299 1 1163 139 90 8 chr6 130388391 130388657 -58890897 + MER33 DNA MER1_type 2 289 -35 2192 73 3 60 chr6 130388999 130389314 -58890240 - AluSp SINE Alu -16 297 1 2348 76 10 0 chr6 130389464 130389767 -58889787 + AluSq SINE Alu 1 306 -7 257 326 61 0 chr6 130390442 130390540 -58889014 + MIR SINE MIR 49 152 -110 252 164 60 30 chr6 130390605 130390672 -58888882 - MIR SINE MIR -1 261 193 354 262 27 81 chr6 130390811 130390960 -58888594 + MER5B DNA MER1_type 4 144 -34 1888 195 58 9 chr6 130391317 130391764 -58887790 + L1ME2 LINE L1 5687 6155 -9 25 31 0 0 chr6 130391770 130391802 -58887752 + AT_rich Low_complexity Low_complexity 1 32 0 805 203 21 21 chr6 130392207 130392394 -58887160 + MER5A DNA MER1_type 3 189 0 199 330 80 10 chr6 130393535 130393635 -58885919 + L2 LINE L2 3159 3265 -48 643 316 46 5 chr6 130394279 130394475 -58885079 - MIR SINE MIR -50 212 9 186 43 0 0 chr6 130394552 130394575 -58884979 + (T)n Simple_repeat Simple_repeat 1 23 0 454 293 156 4 chr6 130394886 130395111 -58884443 + MER20B DNA MER1_type 4 262 -521 6600 126 32 42 chr6 130395115 130395547 -58884007 - Tigger3b DNA MER2_type -1797 1231 796 1617 150 201 14 chr6 130395547 130395906 -58883648 + MSTA LTR MaLR 1 426 -2 6600 126 32 42 chr6 130395906 130396713 -58882841 - Tigger3b DNA MER2_type -2232 796 4 1749 223 101 56 chr6 130396778 130397460 -58882094 - HsTC2a DNA Tc2 -3 741 29 14787 194 44 7 chr6 130397460 130401337 -58878217 + L1PA13 LINE L1 129 4219 -2578 198 0 0 0 chr6 130401337 130401359 -58878195 + (CAA)n Simple_repeat Simple_repeat 2 23 0 14787 194 44 7 chr6 130401359 130402238 -58877316 + L1PA13 LINE L1 4219 5064 -1733 830 109 0 0 chr6 130402238 130402374 -58877180 + AluY SINE Alu 172 307 0 5670 106 35 2 chr6 130402375 130404079 -58875475 + L1PA13 LINE L1 5062 6800 -14 659 263 92 11 chr6 130404121 130404402 -58875152 + MER20B DNA MER1_type 340 643 -140 2098 127 10 7 chr6 130405278 130405585 -58873969 + AluSx SINE Alu 1 308 -4 1684 173 41 44 chr6 130405706 130405905 -58873649 + MLT1A1 LTR MaLR 2 201 -164 231 61 0 0 chr6 130405905 130405938 -58873616 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 1684 173 41 44 chr6 130405938 130406103 -58873451 + MLT1A1 LTR MaLR 201 365 0 756 286 46 13 chr6 130406210 130406448 -58873106 + MIR SINE MIR 2 247 -15 37 0 0 0 chr6 130406858 130406895 -58872659 + AT_rich Low_complexity Low_complexity 1 37 0 1385 175 50 0 chr6 130407056 130407336 -58872218 + MER7A DNA MER2_type 1 292 -54 241 219 68 27 chr6 130407468 130407541 -58872013 + MIR SINE MIR 66 141 -121 218 318 11 11 chr6 130410073 130410161 -58869393 + GA-rich Low_complexity Low_complexity 1 88 0 260 137 20 0 chr6 130411905 130411956 -58867598 + CT-rich Low_complexity Low_complexity 5 56 0 26 0 0 0 chr6 130413606 130413632 -58865922 + AT_rich Low_complexity Low_complexity 1 26 0 245 229 229 8 chr6 130415264 130415382 -58864172 - MIR SINE MIR -31 231 88 499 298 67 39 chr6 130416462 130416670 -58862884 + MIR SINE MIR 1 214 -48 30 0 0 0 chr6 130417047 130417077 -58862477 + AT_rich Low_complexity Low_complexity 1 30 0 234 0 0 0 chr6 130417099 130417125 -58862429 + (TG)n Simple_repeat Simple_repeat 2 27 0 207 357 79 14 chr6 130417606 130417746 -58861808 - MIR3 SINE MIR -7 201 53 533 134 98 18 chr6 130418580 130418692 -58860862 - MER106B DNA MER1_type -904 155 35 228 220 83 119 chr6 130418967 130419076 -58860478 + MER5B DNA MER1_type 1 105 -73 967 186 33 0 chr6 130419088 130419271 -58860283 - MER5A DNA MER1_type 0 189 1 302 273 74 74 chr6 130420497 130420768 -58858786 + L1ME LINE L1 63 333 -5737 550 196 45 103 chr6 130421006 130421228 -58858326 - L1ME LINE L1 -3735 2394 2191 1907 65 108 14 chr6 130421228 130421507 -58858047 - AluY SINE Alu -6 305 1 550 196 45 103 chr6 130421507 130421575 -58857979 - L1ME LINE L1 -3938 2191 2121 314 321 68 53 chr6 130421580 130421641 -58857913 - L1ME LINE L1 -4162 2148 2089 2629 45 0 0 chr6 130421641 130421952 -58857602 - AluY SINE Alu 0 311 1 314 321 68 53 chr6 130421952 130422270 -58857284 - L1ME LINE L1 -4221 2089 1763 2427 86 7 0 chr6 130422428 130422732 -58856822 - AluSx SINE Alu -6 306 1 281 279 43 29 chr6 130422734 130422874 -58856680 - HAL1 LINE L1 -877 1630 1489 1157 213 130 3 chr6 130423065 130423365 -58856189 + MER2 DNA MER2_type 1 338 -7 334 250 72 21 chr6 130423449 130423654 -58855900 - L1ME LINE L1 -5010 1109 887 323 346 10 0 chr6 130423807 130423911 -58855643 - L1ME LINE L1 -5448 671 567 180 0 0 0 chr6 130425109 130425129 -58854425 + (T)n Simple_repeat Simple_repeat 1 20 0 287 317 33 17 chr6 130425821 130425941 -58853613 + MER5A DNA MER1_type 68 189 0 237 270 87 40 chr6 130426781 130426907 -58852647 - MIR SINE MIR -91 171 40 269 191 0 0 chr6 130427059 130427106 -58852448 - MER96 DNA MER1_type? -124 51 5 532 224 55 55 chr6 130427545 130427710 -58851844 - MER69A DNA AcHobo -8 169 5 1542 197 3 3 chr6 130428953 130429243 -58850311 + AluJb SINE Alu 1 290 -22 1986 110 60 3 chr6 130429334 130429616 -58849938 + AluSg SINE Alu 1 298 -12 533 229 36 43 chr6 130429700 130429840 -58849714 + MIR SINE MIR 123 261 -1 344 305 17 34 chr6 130429837 130429955 -58849599 - MIR SINE MIR -57 151 36 * 373 209 22 0 chr6 130431198 130431289 -58848265 - L1MA10 LINE L1 -2 6332 6240 1982 157 39 18 chr6 130431290 130431672 -58847882 + MLT1B LTR MaLR 1 390 0 267 269 0 48 chr6 130431797 130431901 -58847653 - L1MC/D LINE L1 -2002 5806 5708 309 222 0 139 chr6 130432001 130432109 -58847445 - L2 LINE L2 -33 3280 3188 23 68 0 0 chr6 130432134 130432178 -58847376 + AT_rich Low_complexity Low_complexity 1 44 0 1557 75 5 5 chr6 130432464 130432665 -58846889 - AluSq SINE Alu -7 306 106 180 336 48 40 chr6 130432840 130432965 -58846589 - L2 LINE L2 -188 3084 2959 566 223 159 6 chr6 130432980 130433137 -58846417 + MER5A DNA MER1_type 9 189 0 200 59 29 0 chr6 130433782 130433816 -58845738 + (GA)n Simple_repeat Simple_repeat 1 35 0 223 226 0 32 chr6 130433849 130433911 -58845643 - L2 LINE L2 -43 3229 3170 257 53 53 0 chr6 130434387 130434425 -58845129 + MADE1 DNA Mariner 1 40 -40 186 366 47 30 chr6 130434566 130434801 -58844753 - L2 LINE L2 -1003 2311 2073 2377 80 3 0 chr6 130435066 130435367 -58844187 - AluSp SINE Alu -11 302 1 5842 132 31 11 chr6 130435567 130436752 -58842802 + L1MA8 LINE L1 5085 6291 0 21 0 0 0 chr6 130436931 130436952 -58842602 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 130437323 130437352 -58842202 + AT_rich Low_complexity Low_complexity 1 29 0 1945 327 87 39 chr6 130437514 130437544 -58842010 + L2 LINE L2 1625 1652 -1661 940 171 111 15 chr6 130437544 130437743 -58841811 - MER20 DNA MER1_type -1 218 1 1945 327 87 39 chr6 130437743 130439093 -58840461 + L2 LINE L2 1652 3067 -246 407 324 77 0 chr6 130441719 130441901 -58837653 - MIR SINE MIR -43 219 24 207 0 0 0 chr6 130443448 130443471 -58836083 + (A)n Simple_repeat Simple_repeat 1 23 0 2260 87 3 29 chr6 130443609 130443919 -58835635 - AluSc SINE Alu -7 302 1 454 278 102 98 chr6 130443972 130444420 -58835134 + MLT1L LTR MaLR 2 454 -161 891 170 6 24 chr6 130444420 130444585 -58834969 - FRAM SINE Alu -4 162 1 454 278 102 98 chr6 130444585 130444736 -58834818 + MLT1L LTR MaLR 454 603 -12 22 0 0 0 chr6 130444939 130444961 -58834593 + AT_rich Low_complexity Low_complexity 1 22 0 194 337 60 12 chr6 130445750 130445833 -58833721 + L2 LINE L2 3104 3190 -82 28 29 0 0 chr6 130446923 130446958 -58832596 + AT_rich Low_complexity Low_complexity 1 35 0 492 250 9 43 chr6 130447126 130447242 -58832312 - MER5B DNA MER1_type -59 119 8 27 0 0 0 chr6 130447252 130447279 -58832275 + AT_rich Low_complexity Low_complexity 1 27 0 309 299 87 16 chr6 130447294 130447421 -58832133 + L2 LINE L2 3160 3295 -18 343 292 54 38 chr6 130448031 130448216 -58831338 + L3 LINE CR1 709 896 -681 329 326 113 7 chr6 130448451 130448592 -58830962 + L3 LINE CR1 988 1143 -434 355 22 0 0 chr6 130448762 130448808 -58830746 - L1PA6 LINE L1 -2 6152 6107 680 204 154 0 chr6 130448918 130449080 -58830474 - MER5A DNA MER1_type -1 188 2 21 89 0 0 chr6 130449230 130449286 -58830268 + AT_rich Low_complexity Low_complexity 1 56 0 327 286 15 98 chr6 130449412 130449545 -58830009 + MIR SINE MIR 20 141 -121 639 178 119 0 chr6 130449568 130449686 -58829868 + FLAM_A SINE Alu 1 132 -1 580 221 99 115 chr6 130449994 130450437 -58829117 + MLT1H1 LTR MaLR 13 448 -107 895 252 80 66 chr6 130452194 130452694 -58826860 - MLT1G LTR MaLR 0 593 3 22 35 0 0 chr6 130452881 130452910 -58826644 + AT_rich Low_complexity Low_complexity 1 29 0 1003 261 17 1 chr6 130452914 130453164 -58826390 - MIR SINE MIR -1 261 9 258 349 116 14 chr6 130453480 130453626 -58825928 - MIR3 SINE MIR -18 190 30 230 191 0 0 chr6 130454286 130454328 -58825226 + MER58 DNA MER1_type 57 98 -2322 * 595 157 10 0 chr6 130454326 130454428 -58825126 + MER58 DNA MER1_type 2318 2420 0 507 347 87 0 chr6 130457113 130457309 -58822245 + MIR SINE MIR 24 236 -26 299 305 70 31 chr6 130457639 130457767 -58821787 - MIR3 SINE MIR -34 174 42 1451 87 5 0 chr6 130458331 130458527 -58821027 - MER107 DNA MER1_type 0 197 1 323 240 177 21 chr6 130458736 130458832 -58820722 - L2 LINE L2 -12 3301 3191 402 305 64 26 chr6 130458899 130459245 -58820309 - L1MC/D LINE L1 -703 5451 5369 1306 284 72 19 chr6 130459714 130460243 -58819311 + L1ME3A LINE L1 5483 6039 -131 21 0 0 0 chr6 130460564 130460585 -58818969 + AT_rich Low_complexity Low_complexity 1 21 0 777 168 90 6 chr6 130461450 130461617 -58817937 - MER3 DNA MER1_type -27 182 2 5831 161 34 1 chr6 130463027 130464072 -58815482 - L1MC3 LINE L1 -1 7784 6706 312 275 46 55 chr6 130464133 130464242 -58815312 - MIR SINE MIR -71 137 30 840 180 122 48 chr6 130464444 130464633 -58814921 + MER20 DNA MER1_type 5 207 -12 1537 200 14 11 chr6 130464861 130465146 -58814408 - AluJo SINE Alu -26 286 1 547 328 58 12 chr6 130465781 130466022 -58813532 - MIR SINE MIR -10 252 1 185 225 0 0 chr6 130466738 130466778 -58812776 + MIR SINE MIR 213 252 -10 22 35 0 0 chr6 130468174 130468203 -58811351 + AT_rich Low_complexity Low_complexity 1 29 0 435 270 44 96 chr6 130468701 130468994 -58810560 - HAL1 LINE L1 -6 2501 2224 1367 204 86 0 chr6 130469525 130469805 -58809749 - AluJb SINE Alu -8 304 1 344 325 107 6 chr6 130470032 130470201 -58809353 - MIR SINE MIR -57 205 20 392 216 230 34 chr6 130471276 130471424 -58808130 - MIR SINE MIR -8 254 78 576 291 38 0 chr6 130472503 130472661 -58806893 + MIR3 SINE MIR 36 199 -9 282 277 116 52 chr6 130473413 130473568 -58805986 - MIR SINE MIR -6 256 92 22 0 0 0 chr6 130474485 130474507 -58805047 + AT_rich Low_complexity Low_complexity 1 22 0 1353 290 79 33 chr6 130474792 130476276 -58803278 - L1ME3A LINE L1 -24 6146 4594 14661 184 25 11 chr6 130476276 130481339 -58798215 + L1PB1 LINE L1 1322 6526 -341 288 0 0 0 chr6 130481339 130481371 -58798183 + (CA)n Simple_repeat Simple_repeat 2 33 0 14661 184 25 11 chr6 130481371 130481717 -58797837 + L1PB1 LINE L1 6526 6866 -1 572 209 58 26 chr6 130481730 130481921 -58797633 - L1ME3A LINE L1 -1542 4604 4408 592 243 109 19 chr6 130481976 130482186 -58797368 - L1ME3A LINE L1 -2027 4119 3891 1672 232 78 108 chr6 130482393 130483358 -58796196 - L1MC5 LINE L1 -48 7913 6978 22 0 0 0 chr6 130483453 130483475 -58796079 + AT_rich Low_complexity Low_complexity 1 22 0 1152 93 22 0 chr6 130484012 130484209 -58795345 - L1P5 LINE L1 -714 5437 5237 651 92 0 0 chr6 130485260 130485347 -58794207 + 5S rRNA rRNA 4 90 -31 549 110 0 0 chr6 130485459 130485541 -58794013 + (CA)n Simple_repeat Simple_repeat 2 83 0 2300 263 52 49 chr6 130487050 130488269 -58791285 + L1MCc LINE L1 752 2202 -4887 647 265 59 25 chr6 130488298 130488502 -58791052 + L1ME2 LINE L1 5944 6154 -10 304 203 11 38 chr6 130489284 130489377 -58790177 + MLT1F1 LTR MaLR 46 133 -443 2029 217 117 6 chr6 130489379 130489890 -58789664 + L1MD3 LINE L1 7413 7980 -15 27 29 0 0 chr6 130489905 130489939 -58789615 + AT_rich Low_complexity Low_complexity 1 34 0 2118 117 0 3 chr6 130490974 130491273 -58788281 + AluSc SINE Alu 1 298 -11 297 276 78 133 chr6 130492430 130492723 -58786831 - L2 LINE L2 0 3272 2996 200 338 113 0 chr6 130493174 130493254 -58786300 - MIR SINE MIR -153 109 21 399 284 234 44 chr6 130493347 130493910 -58785644 + L2 LINE L2 1703 2372 -942 583 246 107 40 chr6 130495109 130495725 -58783829 + L1MDb LINE L1 1129 1808 -4598 2160 122 0 3 chr6 130496078 130496382 -58783172 + AluSc SINE Alu 1 303 -6 270 229 14 14 chr6 130497022 130497092 -58782462 - L1MCb LINE L1 -5758 287 218 * 396 241 0 0 chr6 130497090 130497177 -58782377 - L1 LINE L1 -1213 4933 4847 11866 213 25 46 chr6 130498010 130498470 -58781084 + L1PA16 LINE L1 2836 3304 -4300 2014 74 3 53 chr6 130498470 130498753 -58780801 - AluY SINE Alu -8 303 35 11866 213 25 46 chr6 130498753 130500425 -58779129 + L1PA16 LINE L1 3304 5009 -2595 198 0 0 0 chr6 130500425 130500447 -58779107 + (TA)n Simple_repeat Simple_repeat 2 23 0 2391 63 0 10 chr6 130500447 130500746 -58778808 - AluY SINE Alu -15 296 1 11866 213 25 46 chr6 130500746 130502235 -58777319 + L1PA16 LINE L1 5008 6377 -1227 4685 15 0 0 chr6 130502235 130502767 -58776787 - L1PA3 LINE L1 -1 6154 5623 11866 213 25 46 chr6 130502767 130503966 -58775588 + L1PA16 LINE L1 6377 7599 -5 549 277 81 57 chr6 130507605 130507977 -58771577 - L1MC4a LINE L1 -1754 6054 5674 442 19 0 0 chr6 130508467 130508519 -58771035 - MADE1 DNA Mariner -28 52 1 266 161 125 0 chr6 130509894 130509950 -58769604 + MER116 DNA Mariner 16 78 -2 180 200 0 0 chr6 130510444 130510494 -58769060 + (TA)n Simple_repeat Simple_repeat 2 51 0 217 313 121 0 chr6 130510740 130510839 -58768715 - L2 LINE L2 -1378 1936 1826 305 322 122 41 chr6 130512958 130513004 -58766550 + L2 LINE L2 2552 2593 -721 2032 132 3 25 chr6 130513004 130513322 -58766232 + AluSx SINE Alu 1 311 -1 305 322 122 41 chr6 130513322 130513570 -58765984 + L2 LINE L2 2593 2870 -444 23 33 0 0 chr6 130514309 130514339 -58765215 + AT_rich Low_complexity Low_complexity 1 30 0 897 52 17 0 chr6 130515592 130515707 -58763847 - AluSc SINE Alu -18 291 175 485 299 67 0 chr6 130515730 130515894 -58763660 - L1MC/D LINE L1 -2042 5766 5592 235 203 68 14 chr6 130515919 130515993 -58763561 - L1MC/D LINE L1 -2378 5430 5353 2129 132 0 3 chr6 130516118 130516428 -58763126 - AluSx SINE Alu -1 311 3 37 0 0 0 chr6 130516567 130516604 -58762950 + AT_rich Low_complexity Low_complexity 1 37 0 469 272 44 12 chr6 130516611 130516861 -58762693 - L1MC/D LINE L1 -1082 5064 4807 24 53 0 0 chr6 130517783 130517821 -58761733 + AT_rich Low_complexity Low_complexity 1 38 0 2234 86 7 3 chr6 130519075 130519367 -58760187 - AluSc SINE Alu -16 293 1 2132 122 0 10 chr6 130520077 130520381 -58759173 + AluSc SINE Alu 1 301 -8 21 57 0 0 chr6 130520476 130520511 -58759043 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 130521159 130521187 -58758367 + AT_rich Low_complexity Low_complexity 1 28 0 378 0 0 0 chr6 130521661 130521703 -58757851 + (TG)n Simple_repeat Simple_repeat 2 43 0 798 247 120 33 chr6 130522270 130522892 -58756662 + L1ME3A LINE L1 5256 5945 -225 416 264 157 0 chr6 130523463 130523643 -58755911 + MIR SINE MIR 42 248 -14 654 260 41 6 chr6 130525310 130525479 -58754075 + MIR SINE MIR 85 259 -3 2151 120 10 0 chr6 130525489 130525789 -58753765 - AluSg SINE Alu -7 303 1 228 146 0 0 chr6 130525915 130525956 -58753598 + L1MA9 LINE L1 5741 5781 -531 411 315 20 83 chr6 130527014 130527232 -58752322 + MIR SINE MIR 34 239 -23 2370 139 55 20 chr6 130527253 130527709 -58751845 + L1MA9 LINE L1 5769 6235 -77 231 64 0 0 chr6 130527709 130527756 -58751798 + LTR66 LTR ERVL 395 441 -169 276 161 0 0 chr6 130527765 130527827 -58751727 + L1MA9 LINE L1 6251 6312 0 220 282 56 0 chr6 130530978 130531049 -58748505 + MIR3 SINE MIR 123 197 -11 521 228 6 66 chr6 130531222 130531389 -58748165 + L1MC5 LINE L1 5363 5519 -2289 768 241 24 43 chr6 130531395 130531482 -58748072 + L1MC5 LINE L1 5625 5712 -2096 3118 86 12 0 chr6 130531482 130531914 -58747640 + L1PA13 LINE L1 5724 6160 -3 768 241 24 43 chr6 130531914 130532079 -58747475 + L1MC5 LINE L1 5712 5872 -1936 1339 212 90 132 chr6 130532764 130533853 -58745701 + L1MC5 LINE L1 6442 7470 -491 2186 178 10 15 chr6 130533853 130534247 -58745307 - MSTD LTR MaLR -4 392 1 1339 212 90 132 chr6 130534247 130534542 -58745012 + L1MC5 LINE L1 7470 7776 -185 356 263 20 10 chr6 130535580 130535679 -58743875 - MIR3 SINE MIR -8 200 101 29 0 0 0 chr6 130535864 130535893 -58743661 + AT_rich Low_complexity Low_complexity 1 29 0 654 177 81 0 chr6 130538861 130538985 -58740569 + MIR SINE MIR 79 212 -50 248 227 0 15 chr6 130538992 130539058 -58740496 + (CTA)n Simple_repeat Simple_repeat 1 65 0 26 0 0 0 chr6 130539288 130539314 -58740240 + AT_rich Low_complexity Low_complexity 1 26 0 30 0 0 0 chr6 130539504 130539534 -58740020 + AT_rich Low_complexity Low_complexity 1 30 0 216 89 0 54 chr6 130543794 130543850 -58735704 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 2094 146 28 3 chr6 130545810 130546167 -58733387 + MER47A DNA MER2_type 1 366 0 2219 106 0 0 chr6 130546943 130547227 -58732327 - AluSg SINE Alu -26 284 1 206 281 62 0 chr6 130548452 130548516 -58731038 + L3 LINE CR1 1256 1323 -254 307 317 89 41 chr6 130549054 130549177 -58730377 + L2 LINE L2 3144 3272 0 25 31 0 0 chr6 130549306 130549338 -58730216 + AT_rich Low_complexity Low_complexity 1 32 0 280 289 99 35 chr6 130550331 130550473 -58729081 - MIR SINE MIR -111 151 1 542 300 45 0 chr6 130550759 130550959 -58728595 + L1MC/D LINE L1 5575 5783 -2025 652 197 15 8 chr6 130553391 130553523 -58726031 + Tigger7 DNA MER2_type 3 135 -598 541 191 178 0 chr6 130553522 130553674 -58725880 + Tigger7 DNA MER2_type 2409 2587 0 * 222 37 0 0 chr6 130555571 130555598 -58723956 + (CA)n Simple_repeat Simple_repeat 2 28 0 2485 45 0 0 chr6 130555717 130556054 -58723500 + AluY SINE Alu 1 311 0 1609 166 7 11 chr6 130556404 130556675 -58722879 - AluJb SINE Alu -39 273 4 21 0 0 0 chr6 130557224 130557245 -58722309 + AT_rich Low_complexity Low_complexity 1 21 0 246 222 176 9 chr6 130557935 130558043 -58721511 - Charlie8 DNA MER1_type -2241 176 51 268 230 27 40 chr6 130558845 130558919 -58720635 + MIR SINE MIR 190 262 0 252 77 0 0 chr6 130558935 130558974 -58720580 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 437 270 20 13 chr6 130558979 130559131 -58720423 + MER63A DNA MER1_type 54 206 -4 398 125 73 42 chr6 130559625 130559721 -58719833 - MER53 DNA DNA -1 188 90 290 291 86 64 chr6 130560127 130560347 -58719207 + MIR SINE MIR 1 225 -37 186 313 171 38 chr6 130560376 130560692 -58718862 - L2 LINE L2 0 3313 2956 197 304 36 0 chr6 130560799 130560855 -58718699 + L2 LINE L2 3232 3289 -24 1049 214 14 9 chr6 130561489 130561709 -58717845 - MIR SINE MIR -34 228 8 237 208 0 0 chr6 130562715 130562763 -58716791 + (CGGGG)n Simple_repeat Simple_repeat 5 52 0 680 150 98 0 chr6 130563507 130563660 -58715894 - MER105 DNA DNA -35 169 2 1475 185 52 47 chr6 130564950 130565179 -58714375 + MLT1B LTR MaLR 1 234 -156 1811 171 3 7 chr6 130565179 130565488 -58714066 + AluJo SINE Alu 2 309 -3 1475 185 52 47 chr6 130565488 130565642 -58713912 + MLT1B LTR MaLR 234 386 -4 23 86 0 0 chr6 130566433 130566491 -58713063 + AT_rich Low_complexity Low_complexity 1 58 0 663 120 0 0 chr6 130566633 130566733 -58712821 - LTR12 LTR ERV1 0 714 615 331 189 33 22 chr6 130566736 130566826 -58712728 - LTR30 LTR ERV1 -80 642 552 1601 131 46 77 chr6 130566826 130567275 -58712279 - LTR12 LTR ERV1 -406 2032 1 5123 110 1 11 chr6 130567275 130568057 -58711497 - HERV9 LTR ERV1 0 8399 7626 1833 105 25 34 chr6 130568055 130568903 -58710651 - HERV9 LTR ERV1 -5156 1740 703 * 1213 151 5 18 chr6 130568873 130569092 -58710462 - HERV9 LTR ERV1 -3428 4971 4756 * 19469 102 19 9 chr6 130569091 130572127 -58707427 - HERV9 LTR ERV1 -1994 444 1 335 222 30 20 chr6 130572128 130572227 -58707327 - LTR30 LTR ERV1 -79 643 544 * 1588 90 97 63 chr6 130572219 130572495 -58707059 - LTR12 LTR ERV1 -429 285 1 290 290 161 6 chr6 130572570 130572732 -58706822 + L3 LINE CR1 718 904 -673 441 124 261 98 chr6 130573476 130573629 -58705925 - MER53 DNA DNA -7 182 5 2004 134 12 94 chr6 130573737 130574162 -58705392 + MLT1B LTR MaLR 1 390 0 427 282 88 18 chr6 130575324 130575494 -58704060 - LTR16C LTR ERVL -10 481 300 291 346 70 26 chr6 130576311 130576467 -58703087 - L2 LINE L2 -5 3308 3146 373 297 124 0 chr6 130576655 130576800 -58702754 + L2 LINE L2 3110 3272 0 1403 80 0 0 chr6 130577404 130577579 -58701975 + AluY SINE Alu 121 295 -16 246 32 0 0 chr6 130577856 130577887 -58701667 + (CA)n Simple_repeat Simple_repeat 1 31 0 219 277 101 17 chr6 130577940 130578059 -58701495 - MIR SINE MIR -3 259 131 996 260 178 13 chr6 130578344 130578806 -58700748 + L2 LINE L2 581 1118 -2196 1151 294 59 41 chr6 130578807 130579318 -58700236 + MLT1H LTR MaLR 17 536 -13 579 316 169 4 chr6 130579358 130579624 -58699930 + L2 LINE L2 1126 1435 -1879 1228 194 53 4 chr6 130579628 130579855 -58699699 + AluJo SINE Alu 1 238 -74 886 210 74 0 chr6 130579865 130580041 -58699513 + MER5A DNA MER1_type 1 189 0 3605 265 77 64 chr6 130580041 130581806 -58697748 + L2 LINE L2 1512 3306 -7 2084 112 3 3 chr6 130581927 130582214 -58697340 - AluSq SINE Alu -26 287 1 852 297 43 25 chr6 130582214 130582339 -58697215 - L1MC/D LINE L1 -743 5403 5510 2607 107 3 3 chr6 130582339 130582703 -58696851 + THE1B LTR MaLR 1 364 0 852 297 43 25 chr6 130582703 130583001 -58696553 - L1MC/D LINE L1 -635 5511 5220 1973 134 41 0 chr6 130583135 130583425 -58696129 + AluSc SINE Alu 1 302 -7 1537 171 65 0 chr6 130583726 130583989 -58695565 + AluJo SINE Alu 12 291 -21 21 36 0 0 chr6 130583992 130584020 -58695534 + AT_rich Low_complexity Low_complexity 1 28 0 1100 258 114 60 chr6 130584062 130585009 -58694545 + L1ME3A LINE L1 5164 6163 -1 2267 110 0 0 chr6 130585411 130585711 -58693843 - AluSq SINE Alu -13 300 1 196 306 65 0 chr6 130585899 130585961 -58693593 + L2 LINE L2 3246 3311 -2 203 235 133 20 chr6 130587683 130587781 -58691773 + L2 LINE L2 2786 2894 -420 190 209 23 0 chr6 130587806 130587849 -58691705 - MIR SINE MIR -150 112 69 651 243 17 39 chr6 130588181 130588362 -58691192 - MIR SINE MIR -14 248 72 31 0 0 0 chr6 130589037 130589068 -58690486 + AT_rich Low_complexity Low_complexity 1 31 0 408 216 41 10 chr6 130589194 130589291 -58690263 - MER81 DNA DNA -1 113 14 1080 277 45 30 chr6 130590783 130591023 -58688531 - MLT1I LTR MaLR -2 407 157 315 0 0 0 chr6 130591023 130591058 -58688496 + (TG)n Simple_repeat Simple_repeat 2 36 0 1080 277 45 30 chr6 130591058 130591218 -58688336 - MLT1I LTR MaLR -252 157 1 269 330 30 30 chr6 130591530 130591630 -58687924 + L2 LINE L2 3169 3268 -4 428 215 33 58 chr6 130591755 130591876 -58687678 + L2 LINE L2 3195 3312 -1 24 0 0 0 chr6 130593437 130593461 -58686093 + AT_rich Low_complexity Low_complexity 1 24 0 553 219 0 0 chr6 130593644 130593740 -58685814 + MER5A DNA MER1_type 11 106 -83 239 329 26 0 chr6 130593915 130593991 -58685563 + 5S rRNA rRNA 33 110 -11 459 207 11 0 chr6 130594013 130594100 -58685454 - AluJ/FLAM SINE Alu -224 88 1 198 322 0 17 chr6 130594634 130594693 -58684861 - L3 LINE CR1 -1103 474 417 183 299 41 52 chr6 130595145 130595242 -58684312 - L3 LINE CR1 -1184 393 298 192 40 0 0 chr6 130595376 130595401 -58684153 + (CAT)n Simple_repeat Simple_repeat 3 27 0 565 312 95 46 chr6 130596008 130596182 -58683372 - L2 LINE L2 -3 3310 3146 231 103 0 0 chr6 130596182 130596221 -58683333 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 565 312 95 46 chr6 130596221 130596234 -58683320 - L2 LINE L2 -167 3146 3135 1686 169 121 46 chr6 130596234 130596665 -58682889 - MLT1C LTR MaLR 0 467 5 565 312 95 46 chr6 130596665 130597084 -58682470 - L2 LINE L2 -178 3135 2665 3234 73 20 7 chr6 130597084 130597126 -58682428 - MLT2A1 LTR ERVL 0 444 404 240 35 0 0 chr6 130597126 130597155 -58682399 + (CA)n Simple_repeat Simple_repeat 2 30 0 3234 73 20 7 chr6 130597155 130597550 -58682004 - MLT2A1 LTR ERVL -40 404 1 565 312 95 46 chr6 130597550 130597583 -58681971 - L2 LINE L2 -648 2665 2635 267 208 0 0 chr6 130597760 130597808 -58681746 - L2 LINE L2 -5 3308 3261 182 352 45 23 chr6 130599498 130599586 -58679968 - L2 LINE L2 -506 2808 2719 466 233 31 104 chr6 130599627 130599820 -58679734 + MIR SINE MIR 27 205 -57 2580 133 18 35 chr6 130599827 130600423 -58679131 - L1MA7 LINE L1 -2 6289 5598 182 111 0 0 chr6 130600423 130600450 -58679104 + MIR SINE MIR 216 242 -20 204 158 0 0 chr6 130601095 130601133 -58678421 + T-rich Low_complexity Low_complexity 1 38 0 630 104 17 17 chr6 130601542 130601657 -58677897 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 317 23 0 23 chr6 130602146 130602189 -58677365 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr6 130602953 130602974 -58676580 + AT_rich Low_complexity Low_complexity 1 21 0 255 61 0 0 chr6 130604387 130604420 -58675134 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 562 14 0 0 chr6 130604657 130604727 -58674827 - AluY SINE Alu -9 303 234 551 234 102 0 chr6 130604905 130605131 -58674423 - MER69 DNA AcHobo -211 2315 2067 345 290 75 27 chr6 130605834 130606020 -58673534 - L2 LINE L2 -1 3312 3118 198 316 32 32 chr6 130607364 130607459 -58672095 + MER5A DNA MER1_type 3 97 -92 2127 162 41 3 chr6 130607551 130607939 -58671615 - MER57A LTR ERV1 0 403 1 266 50 25 0 chr6 130608385 130608425 -58671129 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 228 35 0 0 chr6 130608561 130608590 -58670964 + (CA)n Simple_repeat Simple_repeat 2 30 0 608 179 231 0 chr6 130608672 130608845 -58670709 - L1MA4 LINE L1 -5 6295 6083 4592 136 1 60 chr6 130608859 130609669 -58669885 - THE1C-int LTR MaLR -816 764 3 1814 134 88 20 chr6 130609671 130610022 -58669532 - THE1C LTR MaLR 0 375 1 225 257 0 27 chr6 130612855 130612929 -58666625 + MIR SINE MIR 189 260 -2 456 201 114 13 chr6 130614236 130614385 -58665169 - MIR SINE MIR -8 254 91 25 31 0 0 chr6 130614638 130614670 -58664884 + AT_rich Low_complexity Low_complexity 1 32 0 2109 78 46 0 chr6 130614812 130615094 -58664460 - AluY SINE Alu -16 295 1 21 0 0 0 chr6 130615103 130615124 -58664430 + AT_rich Low_complexity Low_complexity 1 21 0 711 208 15 0 chr6 130615606 130615736 -58663818 - MER5A DNA MER1_type 0 189 58 2456 127 15 13 chr6 130615736 130616129 -58663425 + MER57A LTR ERV1 10 403 0 328 175 18 0 chr6 130616129 130616186 -58663368 - MER5A DNA MER1_type -131 58 1 310 306 65 9 chr6 130617585 130617693 -58661861 + MIR SINE MIR 34 147 -61 1387 153 4 60 chr6 130619698 130619966 -58659588 + AluJb SINE Alu 54 306 -6 385 128 54 20 chr6 130621603 130621751 -58657803 + (TATAA)n Simple_repeat Simple_repeat 5 157 0 21 89 0 0 chr6 130622094 130622150 -58657404 + AT_rich Low_complexity Low_complexity 1 56 0 793 319 22 0 chr6 130623027 130623256 -58656298 + MIR SINE MIR 19 252 -10 429 340 110 48 chr6 130623402 130623737 -58655817 + L2 LINE L2 2915 3270 -2 214 367 39 23 chr6 130625376 130625504 -58654050 - L2 LINE L2 -2 3270 3141 2379 216 49 13 chr6 130625524 130626079 -58653475 - MER90 LTR ERV1 0 575 1 692 307 48 9 chr6 130626371 130626602 -58652952 - MIR SINE MIR -4 258 19 215 333 83 8 chr6 130627291 130627411 -58652143 - MIR SINE MIR -68 194 66 1620 175 7 10 chr6 130627487 130627778 -58651776 + AluJb SINE Alu 7 296 -16 493 243 111 49 chr6 130628233 130628545 -58651009 + MLT1H LTR MaLR 95 491 -58 410 230 0 23 chr6 130628531 130628618 -58650936 + AluSp SINE Alu 132 216 -87 * 923 138 105 13 chr6 130628618 130628770 -58650784 + AluSg/x SINE Alu 131 296 -14 306 106 0 0 chr6 130629099 130629146 -58650408 + (TA)n Simple_repeat Simple_repeat 2 48 0 22750 72 19 17 chr6 130629376 130632913 -58646641 - L1PA3 LINE L1 -2 6153 2595 481 298 102 15 chr6 130633021 130633226 -58646328 - L1ME LINE L1 -521 5649 5427 430 233 48 44 chr6 130633334 130633604 -58645950 - L1ME LINE L1 -808 5338 5068 301 304 88 0 chr6 130633610 130633758 -58645796 - L1ME LINE L1 -1109 5037 4877 786 247 137 60 chr6 130633949 130634329 -58645225 + MLT1I LTR MaLR 1 409 0 1993 109 39 0 chr6 130636927 130637210 -58642344 - AluSc SINE Alu -15 294 1 2780 143 22 0 chr6 130637696 130638156 -58641398 - MER101 LTR ERV1 0 474 5 210 289 0 0 chr6 130638163 130638267 -58641287 + (TA)n Simple_repeat Simple_repeat 1 104 0 2137 118 0 3 chr6 130638285 130638589 -58640965 - AluSc SINE Alu -6 303 1 2283 114 0 13 chr6 130639000 130639316 -58640238 + AluSx SINE Alu 1 312 0 188 323 83 0 chr6 130640769 130640865 -58638689 - L2 LINE L2 -1 3271 3168 192 317 83 87 chr6 130640996 130641296 -58638258 - L2 LINE L2 -367 2947 2649 1176 203 16 48 chr6 130644662 130644913 -58634641 - MLT1A2 LTR MaLR -114 260 18 348 296 78 0 chr6 130646396 130646511 -58633043 - L2 LINE L2 0 3313 3190 1040 222 48 4 chr6 130646790 130647038 -58632516 + MIR SINE MIR 3 261 -1 212 294 98 33 chr6 130647517 130647670 -58631884 - MIR3 SINE MIR -6 202 40 404 333 43 27 chr6 130647833 130648019 -58631535 - MLT1I LTR MaLR -127 282 94 209 239 42 42 chr6 130648373 130648444 -58631110 + MIR SINE MIR 114 184 -78 660 276 128 5 chr6 130648444 130648647 -58630907 - MIR SINE MIR -10 252 25 279 277 153 28 chr6 130648974 130649151 -58630403 - MIR SINE MIR -56 206 8 533 317 193 5 chr6 130649653 130649855 -58629699 + MIR SINE MIR 16 255 -7 186 103 0 0 chr6 130649856 130649885 -58629669 + (ATG)n Simple_repeat Simple_repeat 2 30 0 325 370 83 52 chr6 130649896 130650223 -58629331 - L2 LINE L2 -51 3221 2885 278 319 148 6 chr6 130650287 130650456 -58629098 - L2 LINE L2 -558 2756 2564 587 310 117 14 chr6 130650863 130651076 -58628478 + MIR SINE MIR 12 246 -16 2084 141 0 0 chr6 130651089 130651386 -58628168 - AluSx SINE Alu -15 297 1 2516 180 60 18 chr6 130651710 130652209 -58627345 - MLT2B1 LTR ERVL 0 520 1 206 341 217 0 chr6 130652773 130652902 -58626652 + MIR3 SINE MIR 45 201 -7 199 258 45 0 chr6 130653039 130653105 -58626449 - L3 LINE CR1 -159 1418 1350 4478 155 52 16 chr6 130654197 130655088 -58624466 - Tigger3b DNA MER2_type -1 1230 308 1356 167 0 9 chr6 130655106 130655322 -58624232 - AluJb SINE Alu -15 297 84 1042 171 271 4 chr6 130655323 130655574 -58623980 - Tigger3b DNA MER2_type -913 318 1 24 0 0 0 chr6 130655809 130655833 -58623721 + AT_rich Low_complexity Low_complexity 1 24 0 323 284 112 31 chr6 130657377 130657536 -58622018 - MIR3 SINE MIR -63 145 10 259 292 161 15 chr6 130659160 130659290 -58620264 - L2 LINE L2 0 3313 3165 256 318 117 67 chr6 130659504 130659683 -58619871 - MIR3 SINE MIR -9 199 12 2246 107 0 3 chr6 130660288 130660587 -58618967 - AluSx SINE Alu -14 298 1 2262 77 3 0 chr6 130660609 130660907 -58618647 - L1PA7 LINE L1 -4 6150 5852 209 224 129 47 chr6 130661338 130661423 -58618131 + MIR SINE MIR 135 226 -36 1040 237 176 69 chr6 130663070 130663250 -58616304 - L1ME3A LINE L1 -13 6157 5998 1297 172 13 81 chr6 130663250 130663558 -58615996 - AluJo SINE Alu -25 287 1 1040 237 176 69 chr6 130663558 130664014 -58615540 - L1ME3A LINE L1 -172 5998 5453 445 236 188 18 chr6 130664247 130664476 -58615078 - MLT1K LTR MaLR 0 588 321 261 312 55 9 chr6 130664608 130664717 -58614837 - MLT1K LTR MaLR -464 124 11 563 277 38 0 chr6 130665714 130665873 -58613681 + MER58A DNA MER1_type 1 165 0 240 250 0 0 chr6 130665882 130665930 -58613624 + L2 LINE L2 3190 3237 -76 195 204 0 0 chr6 130665971 130666020 -58613534 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 225 295 39 47 chr6 130666076 130666205 -58613349 - L2 LINE L2 -203 3069 2942 471 281 111 0 chr6 130667198 130667369 -58612185 + MIR SINE MIR 72 261 -1 208 206 0 0 chr6 130667380 130667414 -58612140 - MIR SINE MIR -180 82 49 1978 234 62 2 chr6 130667652 130668084 -58611470 + MER119 DNA MER1_type 1 458 -125 43047 31 21 1 chr6 130668119 130674147 -58605407 - L1PA2 LINE L1 -3 6152 2 509 238 7 42 chr6 130674150 130674293 -58605261 + MER119 DNA MER1_type 446 583 0 488 214 150 7 chr6 130674334 130674474 -58605080 + MIR SINE MIR 48 207 -55 2201 131 0 3 chr6 130675323 130675760 -58603794 - AluSx SINE Alu 0 436 1 518 248 188 41 chr6 130676160 130676378 -58603176 - MIR SINE MIR 0 262 13 890 284 148 8 chr6 130678706 130679097 -58600457 + L2 LINE L2 1872 2317 -997 514 252 92 17 chr6 130679099 130679428 -58600126 - MLT1I LTR MaLR 0 409 1 1166 276 195 26 chr6 130679434 130680293 -58599261 + L2 LINE L2 2316 3313 0 2888 0 0 0 chr6 130680615 130680924 -58598630 + AluYa5 SINE Alu 1 309 -2 23 33 0 0 chr6 130680993 130681023 -58598531 + AT_rich Low_complexity Low_complexity 1 30 0 6371 25 0 0 chr6 130681023 130681792 -58597762 - L1PA3 LINE L1 -3 6152 5384 2720 28 17 0 chr6 130681789 130682149 -58597405 + L1PA3 LINE L1 5015 5380 -766 * 227 203 0 58 chr6 130682711 130682780 -58596774 + MIR SINE MIR 133 197 -65 6623 69 8 0 chr6 130682925 130684627 -58594927 - L1PA7 LINE L1 0 6154 4437 3319 94 0 0 chr6 130684627 130685106 -58594448 + L1PA7 LINE L1 3958 4436 -1710 375 290 50 0 chr6 130685106 130685206 -58594348 - MIR SINE MIR -69 193 89 370 303 186 15 chr6 130685351 130685615 -58593939 - L2 LINE L2 -966 2348 2040 1625 266 37 35 chr6 130685630 130686171 -58593383 - MLT1E LTR MaLR -37 556 15 226 319 135 6 chr6 130686333 130686496 -58593058 - MLT1J2 LTR MaLR 0 450 267 517 210 63 14 chr6 130686524 130686667 -58592887 - MLT1J2 LTR MaLR -264 186 37 288 0 0 0 chr6 130686753 130686785 -58592769 + (CA)n Simple_repeat Simple_repeat 2 33 0 248 232 66 80 chr6 130686827 130686978 -58592576 - L1ME3A LINE L1 -2 6168 6020 470 300 157 44 chr6 130687097 130687593 -58591961 + L2 LINE L2 1797 2348 -966 948 211 30 35 chr6 130687626 130687858 -58591696 - MIR SINE MIR 0 262 32 5077 91 19 3 chr6 130688611 130689381 -58590173 + L1PA13 LINE L1 5377 6159 -4 190 195 0 0 chr6 130690691 130690732 -58588822 + L2 LINE L2 3267 3307 -6 30334 108 10 56 chr6 130692597 130699045 -58580509 - L1PA7 LINE L1 0 6154 12 326 269 43 21 chr6 130699422 130699614 -58579940 - MLT1L LTR MaLR -29 583 290 212 167 0 0 chr6 130699949 130699985 -58579569 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 230 239 30 0 chr6 130700033 130700100 -58579454 + (TG)n Simple_repeat Simple_repeat 2 70 0 689 287 76 20 chr6 130703034 130703337 -58576217 - MLT1I LTR MaLR -83 326 7 279 320 104 8 chr6 130703428 130703553 -58576001 - L2 LINE L2 0 3272 3136 2308 107 0 3 chr6 130703883 130704193 -58575361 - AluSx SINE Alu -3 309 1 8480 108 101 31 chr6 130705494 130707082 -58572472 + pTR5 LTR ERV1 741 2438 0 252 347 179 22 chr6 130707085 130707454 -58572100 - L2 LINE L2 -592 2722 2296 219 309 77 77 chr6 130707470 130707742 -58571812 - L2 LINE L2 -1395 1919 1648 211 231 19 0 chr6 130708304 130708356 -58571198 + A-rich Low_complexity Low_complexity 4 56 0 281 226 0 0 chr6 130708558 130708611 -58570943 - MIR3 SINE MIR -3 205 153 311 245 20 61 chr6 130711059 130711152 -58568402 - L2 LINE L2 -1 3271 3183 449 293 116 58 chr6 130711152 130711394 -58568160 + MIR SINE MIR 1 256 -6 23 0 0 0 chr6 130712140 130712163 -58567391 + AT_rich Low_complexity Low_complexity 1 23 0 260 239 0 60 chr6 130712321 130712388 -58567166 + L2 LINE L2 3209 3271 -1 258 32 0 0 chr6 130713299 130713330 -58566224 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 340 299 10 0 chr6 130713330 130713427 -58566127 - L2 LINE L2 -5 3308 3211 288 111 0 0 chr6 130714015 130714060 -58565494 + (CCA)n Simple_repeat Simple_repeat 3 47 0 23 0 0 0 chr6 130714541 130714564 -58564990 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr6 130714739 130714769 -58564785 + AT_rich Low_complexity Low_complexity 1 30 0 202 340 0 0 chr6 130715385 130715435 -58564119 - L2 LINE L2 -39 3233 3184 222 91 0 0 chr6 130715541 130715574 -58563980 + (CCA)n Simple_repeat Simple_repeat 3 35 0 365 297 70 0 chr6 130715985 130716113 -58563441 - MIR SINE MIR -24 238 102 212 332 136 55 chr6 130716162 130716361 -58563193 + L2 LINE L2 2403 2617 -697 2109 137 47 33 chr6 130716379 130716738 -58562816 + THE1B LTR MaLR 1 364 0 288 0 0 0 chr6 130717247 130717279 -58562275 + (TG)n Simple_repeat Simple_repeat 2 33 0 1135 197 28 16 chr6 130718463 130718712 -58560842 + MLT2B1 LTR ERVL 3 254 -266 28 29 0 0 chr6 130718715 130718750 -58560804 + AT_rich Low_complexity Low_complexity 1 35 0 824 257 21 51 chr6 130718773 130719010 -58560544 + MLT2B1 LTR ERVL 225 454 -66 450 295 162 32 chr6 130719188 130719663 -58559891 + MARNA DNA Mariner 28 564 -22 184 313 112 41 chr6 130719897 130720165 -58559389 - L2 LINE L2 -1485 1829 1543 838 297 34 31 chr6 130720207 130720557 -58558997 + L3 LINE CR1 651 1001 -576 527 287 25 49 chr6 130720587 130720911 -58558643 + L1MC4a LINE L1 5756 6071 -1737 240 306 90 9 chr6 130721188 130721299 -58558255 + L3 LINE CR1 1236 1355 -222 295 318 117 50 chr6 130721306 130721485 -58558069 - L2 LINE L2 -1 3271 3081 2380 158 40 5 chr6 130721547 130721996 -58557558 + MER31A LTR ERV1 13 477 -8 242 203 188 47 chr6 130722217 130722345 -58557209 + L3 LINE CR1 1357 1502 -75 181 274 48 36 chr6 130722945 130723029 -58556525 + L2 LINE L2 3229 3313 0 275 0 29 0 chr6 130723114 130723149 -58556405 + (CA)n Simple_repeat Simple_repeat 2 37 0 349 308 83 17 chr6 130723149 130723269 -58556285 - MIR SINE MIR -122 140 13 24 67 0 0 chr6 130723315 130723360 -58556194 + AT_rich Low_complexity Low_complexity 1 45 0 434 49 16 0 chr6 130723361 130723422 -58556132 + (TA)n Simple_repeat Simple_repeat 2 63 0 986 160 31 0 chr6 130724363 130724557 -58554997 - L1MA4 LINE L1 -84 6216 6017 511 164 91 36 chr6 130726204 130726314 -58553240 + MLT1A1 LTR MaLR 1 116 -249 222 254 0 18 chr6 130729201 130729256 -58550298 + MIR SINE MIR 153 206 -56 543 144 4 6 chr6 130729536 130729786 -58549768 + AluSx SINE Alu 1 300 -12 185 233 14 68 chr6 130730573 130730646 -58548908 + MIR SINE MIR 84 152 -56 234 0 0 0 chr6 130730851 130730877 -58548677 + (TG)n Simple_repeat Simple_repeat 2 27 0 399 73 0 0 chr6 130732502 130732557 -58546997 + (CA)n Simple_repeat Simple_repeat 1 55 0 194 0 39 0 chr6 130732817 130732843 -58546711 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr6 130732912 130732933 -58546621 + AT_rich Low_complexity Low_complexity 1 21 0 295 345 146 12 chr6 130733632 130733803 -58545751 - MIR SINE MIR -21 241 48 2443 150 33 19 chr6 130733821 130734240 -58545314 - MSTB1 LTR MaLR 0 432 8 22 0 0 0 chr6 130734657 130734679 -58544875 + AT_rich Low_complexity Low_complexity 1 22 0 2072 204 26 7 chr6 130734863 130735320 -58544234 + MLT1C LTR MaLR 1 466 -1 214 293 8 83 chr6 130736029 130736162 -58543392 - MIR SINE MIR -109 153 31 182 264 19 0 chr6 130738107 130738160 -58541394 - L3b LINE CR1 -376 1207 1154 3236 176 31 72 chr6 130738668 130739496 -58540058 - Charlie1a DNA MER1_type 0 1455 662 851 230 15 45 chr6 130739491 130739691 -58539863 - Charlie1a DNA MER1_type -1255 200 7 * 258 320 143 49 chr6 130739707 130739910 -58539644 + L2 LINE L2 2255 2476 -838 354 280 140 21 chr6 130740154 130740347 -58539207 + MIR SINE MIR 47 262 0 204 391 0 0 chr6 130740414 130740501 -58539053 + L2 LINE L2 3178 3264 -8 369 289 44 0 chr6 130741793 130741907 -58537647 - MER94 DNA DNA -7 127 9 21 36 0 0 chr6 130743125 130743153 -58536401 + AT_rich Low_complexity Low_complexity 1 28 0 3809 121 120 70 chr6 130743792 130745179 -58534375 - pTR5 LTR ERV1 0 2438 66 259 221 93 0 chr6 130748670 130748756 -58530798 + L1ME4a LINE L1 5992 6085 -36 345 269 12 99 chr6 130749361 130749507 -58530047 + L2 LINE L2 3158 3288 -25 1891 134 3 11 chr6 130749507 130749791 -58529763 - AluSx SINE Alu -17 295 14 345 269 12 99 chr6 130749791 130749815 -58529739 + L2 LINE L2 3288 3313 0 186 43 0 0 chr6 130750050 130750073 -58529481 + (T)n Simple_repeat Simple_repeat 1 23 0 253 337 48 12 chr6 130750101 130750184 -58529370 + MIR SINE MIR 17 102 -106 554 294 16 67 chr6 130751347 130751541 -58528013 - MLT1K LTR MaLR -190 398 215 444 128 0 0 chr6 130751558 130751636 -58527918 + (CA)n Simple_repeat Simple_repeat 2 79 0 225 0 0 0 chr6 130751638 130751663 -58527891 + (GA)n Simple_repeat Simple_repeat 2 26 0 21 57 0 0 chr6 130752125 130752160 -58527394 + AT_rich Low_complexity Low_complexity 1 35 0 300 284 128 28 chr6 130752858 130752967 -58526587 - L2 LINE L2 -16 3256 3137 250 297 44 44 chr6 130753032 130753123 -58526431 - MIR SINE MIR -165 97 7 240 289 171 80 chr6 130753154 130753341 -58526213 - L2 LINE L2 -181 3091 2888 199 408 92 0 chr6 130753493 130753677 -58525877 - L2 LINE L2 -606 2708 2508 877 256 15 0 chr6 130753694 130753893 -58525661 + MIR SINE MIR 34 235 -27 397 345 7 49 chr6 130753942 130754246 -58525308 - L2 LINE L2 -889 2425 2135 27 49 0 0 chr6 130755818 130755859 -58523695 + AT_rich Low_complexity Low_complexity 1 41 0 580 354 55 29 chr6 130757637 130758055 -58521499 - L3 LINE CR1 -12 1565 1137 3264 133 50 2 chr6 130758314 130758817 -58520737 + MER1A DNA MER1_type 1 527 0 196 250 0 21 chr6 130758871 130758919 -58520635 - L3 LINE CR1 -7 1570 1524 319 212 61 20 chr6 130759133 130759232 -58520322 - MIR SINE MIR -113 149 47 2412 285 129 49 chr6 130759451 130760824 -58518730 - HAL1 LINE L1 -146 2361 783 2112 111 3 37 chr6 130760824 130761148 -58518406 - AluSp SINE Alu 0 313 1 2412 285 129 49 chr6 130761148 130761733 -58517821 - HAL1 LINE L1 -1724 783 246 474 296 62 4 chr6 130761812 130762055 -58517499 - L1ME4a LINE L1 -277 5844 5588 203 176 0 0 chr6 130763987 130764021 -58515533 + T-rich Low_complexity Low_complexity 3 36 0 207 346 55 8 chr6 130764970 130765097 -58514457 - MIR3 SINE MIR -50 158 26 863 211 28 42 chr6 130765614 130765827 -58513727 - MER20 DNA MER1_type -4 215 6 357 231 256 13 chr6 130766045 130766201 -58513353 - LTR33A LTR ERVL -5 518 325 311 109 43 0 chr6 130766302 130766348 -58513206 - LTR33A LTR ERVL -327 196 149 637 311 76 4 chr6 130766737 130766962 -58512592 - MIR SINE MIR -20 242 2 609 200 59 15 chr6 130767113 130767248 -58512306 - MIR SINE MIR -118 144 4 205 270 42 90 chr6 130767308 130767497 -58512057 - L2 LINE L2 -40 3273 3094 277 299 90 80 chr6 130768545 130768746 -58510808 + MIR SINE MIR 3 205 -57 255 307 132 0 chr6 130769036 130769150 -58510404 + MIR SINE MIR 126 254 -8 2319 199 27 35 chr6 130770759 130771277 -58508277 - MER67D LTR ERV1 0 514 1 230 164 18 0 chr6 130771424 130771479 -58508075 + (TA)n Simple_repeat Simple_repeat 1 56 0 22 35 0 0 chr6 130771717 130771746 -58507808 + AT_rich Low_complexity Low_complexity 1 29 0 1816 209 3 32 chr6 130772126 130772266 -58507288 + MLT1A1 LTR MaLR 4 147 -218 2103 114 29 32 chr6 130772266 130772642 -58506912 - THE1C LTR MaLR 0 375 1 1816 209 3 32 chr6 130772642 130772874 -58506680 + MLT1A1 LTR MaLR 147 365 0 2159 103 10 0 chr6 130772952 130773242 -58506312 - AluSp SINE Alu -20 293 1 13277 87 16 3 chr6 130773997 130777480 -58502074 - L1PA7 LINE L1 0 6469 2953 4735 138 107 83 chr6 130777480 130779072 -58500482 - pTR5 LTR ERV1 0 1798 35 11740 127 9 64 chr6 130779072 130782093 -58497461 - L1PA7 LINE L1 -3504 2957 4 23 0 0 0 chr6 130782118 130782141 -58497413 + AT_rich Low_complexity Low_complexity 1 23 0 270 56 0 0 chr6 130783755 130783791 -58495763 + (CA)n Simple_repeat Simple_repeat 1 36 0 2557 89 8 8 chr6 130783839 130784199 -58495355 - L1PA11 LINE L1 0 6174 5815 2287 148 22 31 chr6 130784788 130784867 -58494687 - L1PA11 LINE L1 -590 5575 5497 2017 95 12 83 chr6 130784867 130785193 -58494361 - AluSx SINE Alu -9 303 1 2287 148 22 31 chr6 130785193 130785839 -58493715 - L1PA11 LINE L1 -668 5497 4865 225 229 16 0 chr6 130786691 130786752 -58492802 + MER103 DNA DNA 56 117 -49 23 33 0 0 chr6 130787072 130787102 -58492452 + AT_rich Low_complexity Low_complexity 1 30 0 556 246 0 17 chr6 130788042 130788160 -58491394 - FLAM_C SINE Alu -21 122 7 5390 108 35 23 chr6 130788196 130788726 -58490828 + L1MA3 LINE L1 5369 5916 -389 2334 98 0 0 chr6 130788726 130789032 -58490522 - AluY SINE Alu -5 306 1 5390 108 35 23 chr6 130789032 130789422 -58490132 + L1MA3 LINE L1 5916 6300 -5 201 322 46 0 chr6 130789604 130789691 -58489863 - L2 LINE L2 -549 2765 2675 236 338 121 30 chr6 130790100 130790431 -58489123 - L2 LINE L2 -1256 2058 1698 833 190 38 62 chr6 130791056 130791267 -58488287 + MER20 DNA MER1_type 5 210 -9 5206 164 21 40 chr6 130791387 130792579 -58486975 - L1MC2 LINE L1 -37 6307 5122 379 202 50 0 chr6 130792621 130792720 -58486834 - L1MC2 LINE L1 -974 5172 5069 21 36 0 0 chr6 130792826 130792854 -58486700 + AT_rich Low_complexity Low_complexity 1 28 0 506 321 62 21 chr6 130793911 130794154 -58485400 + L3b LINE CR1 1329 1581 -2 420 295 148 19 chr6 130795095 130795305 -58484249 + MIR SINE MIR 14 250 -12 249 318 106 26 chr6 130795422 130795573 -58483981 + MIR SINE MIR 86 248 -14 381 90 13 26 chr6 130795935 130796013 -58483541 + (TA)n Simple_repeat Simple_repeat 1 77 0 420 264 47 23 chr6 130796139 130796268 -58483286 - L1ME4a LINE L1 -218 5903 5772 257 164 0 18 chr6 130796850 130796905 -58482649 - MLT1D LTR MaLR -2 503 450 4482 62 4 11 chr6 130796933 130797480 -58482074 - SVA Other Other -3 1383 841 443 36 0 0 chr6 130797480 130797536 -58482018 + L1P LINE L1 3704 3759 -2387 3191 69 19 2 chr6 130797678 130798097 -58481457 - SVA Other Other -237 1149 724 1501 205 136 0 chr6 130798103 130798494 -58481060 - MLT1D LTR MaLR -61 444 1 254 245 19 133 chr6 130799126 130799359 -58480195 - MIR3 SINE MIR -28 234 9 6386 150 45 115 chr6 130799439 130801263 -58478291 + pTR5 LTR ERV1 742 2438 0 514 265 199 33 chr6 130802929 130803490 -58476064 - MLT2F LTR ERVL -1 662 1 371 339 41 0 chr6 130803526 130803647 -58475907 - L2 LINE L2 -10 3262 3137 923 339 123 20 chr6 130803744 130804340 -58475214 - L2 LINE L2 -639 2675 2019 2010 200 36 11 chr6 130804370 130804904 -58474650 - Charlie1 DNA MER1_type -5 2756 2210 251 305 24 0 chr6 130804910 130804992 -58474562 - Charlie1 DNA MER1_type -2677 84 1 753 315 156 24 chr6 130804995 130805500 -58474054 - L2 LINE L2 -1367 1947 1376 293 287 69 0 chr6 130805600 130805701 -58473853 + MIR3 SINE MIR 95 202 -6 365 293 122 44 chr6 130805864 130806045 -58473509 + L1ME LINE L1 5552 5746 -375 330 67 0 0 chr6 130807569 130807614 -58471940 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr6 130807794 130807815 -58471739 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 130808292 130808313 -58471241 + AT_rich Low_complexity Low_complexity 1 21 0 1059 106 11 11 chr6 130809034 130809149 -58470405 + (TTCC)n Simple_repeat Simple_repeat 1 294 0 1059 106 11 11 chr6 130809149 130809328 -58470226 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1513 178 62 10 chr6 130809354 130809646 -58469908 - AluJo SINE Alu -5 307 1 234 283 117 14 chr6 130909818 130909963 -58369591 + L2 LINE L2 3111 3270 -43 855 168 123 27 chr6 130910240 130910460 -58369094 - L1P LINE L1 -916 5230 4990 * 5388 97 41 2 chr6 130910452 130911314 -58368240 + L1PA13 LINE L1 5265 6159 -4 1679 212 82 5 chr6 130911348 130911797 -58367757 - LTR54B LTR ERV1 -7 491 8 2372 87 3 0 chr6 130912246 130912544 -58367010 + AluSp SINE Alu 1 299 -14 560 245 82 51 chr6 130912797 130912993 -58366561 - MIR SINE MIR -56 206 5 2125 112 0 7 chr6 130913102 130913410 -58366144 + AluSg SINE Alu 1 306 0 2349 93 6 3 chr6 130913917 130914296 -58365258 - AluSq SINE Alu 0 380 1 343 384 29 23 chr6 130915273 130915445 -58364109 - L2 LINE L2 -589 2725 2553 1058 270 145 21 chr6 130915892 130916259 -58363295 - L1M4 LINE L1 -4878 1977 1657 6679 68 12 27 chr6 130916259 130917811 -58361743 - L1PA6 LINE L1 0 6154 4614 1058 270 145 21 chr6 130917811 130918054 -58361500 - L1M4 LINE L1 -5198 1657 1445 2189 111 3 7 chr6 130918054 130918351 -58361203 - AluSg SINE Alu -14 296 1 1058 270 145 21 chr6 130918351 130918443 -58361111 - L1M4 LINE L1 -5410 1445 1187 38440 67 11 9 chr6 130918458 130923918 -58355636 + L1PA5 LINE L1 2 5482 -672 2478 81 0 0 chr6 130923918 130924228 -58355326 + AluY SINE Alu 1 310 -1 38440 67 11 9 chr6 130924228 130924889 -58354665 + L1PA5 LINE L1 5482 6140 -14 290 246 9 0 chr6 130924894 130925008 -58354546 + (TA)n Simple_repeat Simple_repeat 1 115 0 300 287 96 37 chr6 130925057 130925193 -58354361 - L1M4 LINE L1 -5683 1172 1029 417 264 81 27 chr6 130925460 130925734 -58353820 - L1M4 LINE L1 -6335 520 12 219 274 157 49 chr6 130927859 130927961 -58351593 + MIR3 SINE MIR 90 202 -6 265 242 45 0 chr6 130928651 130928717 -58350837 + CT-rich Low_complexity Low_complexity 1 69 0 180 97 0 0 chr6 130928924 130928955 -58350599 + (TG)n Simple_repeat Simple_repeat 2 32 0 326 308 125 24 chr6 130929287 130929495 -58350059 - MIR SINE MIR 0 262 34 25 31 0 0 chr6 130929637 130929669 -58349885 + AT_rich Low_complexity Low_complexity 1 32 0 242 316 26 53 chr6 130930023 130930175 -58349379 - MIR SINE MIR 0 262 115 247 221 15 15 chr6 130930753 130930821 -58348733 + (CATA)n Simple_repeat Simple_repeat 4 71 0 556 277 83 32 chr6 130930822 130931132 -58348422 - L1ME LINE L1 -341 5780 5447 302 107 0 71 chr6 130932104 130932160 -58347394 + Charlie5 DNA MER1_type 15 66 -2546 486 171 57 29 chr6 130932180 130932320 -58347234 + Charlie5 DNA MER1_type 2436 2579 -33 309 341 65 29 chr6 130932362 130932532 -58347022 - MIR3 SINE MIR -8 200 25 2390 68 0 0 chr6 130933023 130933318 -58346236 + AluY SINE Alu 1 295 -16 283 202 46 55 chr6 130934764 130934873 -58344681 - MER112 DNA MER1_type -6 254 147 2509 65 82 11 chr6 130935762 130936129 -58343425 + L1PA10 LINE L1 5768 6160 -8 2081 116 17 3 chr6 130936829 130937131 -58342423 - AluSg SINE Alu -4 306 1 1001 190 0 0 chr6 130937282 130937440 -58342114 + FRAM SINE Alu 1 158 -8 408 281 110 24 chr6 130937823 130937987 -58341567 + MER5B DNA MER1_type 1 178 0 711 266 16 16 chr6 130937995 130938128 -58341426 - MER5A DNA MER1_type 0 189 54 1316 208 99 18 chr6 130938128 130938470 -58341084 + MLT1A2 LTR MaLR 1 370 -4 711 266 16 16 chr6 130938470 130938524 -58341030 - MER5A DNA MER1_type -134 55 2 388 275 8 33 chr6 130938525 130938645 -58340909 - MER5B DNA MER1_type -61 117 1 228 270 68 14 chr6 130938645 130938716 -58340838 - MIR SINE MIR -98 164 90 272 333 23 11 chr6 130938999 130939176 -58340378 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 325 314 77 26 chr6 130939730 130939886 -58339668 + MIR3 SINE MIR 14 177 -31 22 0 0 0 chr6 130940505 130940527 -58339027 + AT_rich Low_complexity Low_complexity 1 22 0 2087 123 3 16 chr6 130940601 130940910 -58338644 - AluSq SINE Alu -8 305 1 429 219 181 45 chr6 130940932 130941030 -58338524 - MER5B DNA MER1_type 0 178 95 2248 81 7 14 chr6 130941030 130941325 -58338229 - AluY SINE Alu -18 293 1 429 219 181 45 chr6 130941325 130941381 -58338173 - MER5B DNA MER1_type -83 95 3 434 288 28 28 chr6 130941391 130941568 -58337986 + MER5B DNA MER1_type 1 177 -1 443 328 92 31 chr6 130941815 130942044 -58337510 - MIR SINE MIR -1 261 19 261 331 97 8 chr6 130942479 130942603 -58336951 + MIR3 SINE MIR 3 137 -71 215 182 0 0 chr6 130943952 130943985 -58335569 + MER91 DNA MER1_type 136 168 -22 370 358 161 26 chr6 130944130 130944552 -58335002 + L3 LINE CR1 658 1136 -441 219 281 61 24 chr6 130944605 130944687 -58334867 + L3 LINE CR1 1260 1344 -233 586 202 45 79 chr6 130944842 130945020 -58334534 - MER5B DNA MER1_type -6 172 1 271 224 0 82 chr6 130945162 130945247 -58334307 + MIR SINE MIR 185 262 0 344 272 95 27 chr6 130945252 130945399 -58334155 - MIR SINE MIR -78 184 28 2352 26 0 0 chr6 130947959 130948224 -58331330 + AluY SINE Alu 1 265 -46 180 0 0 0 chr6 130948227 130948247 -58331307 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2146 94 0 34 chr6 130948845 130949143 -58330411 + AluSg SINE Alu 1 288 -22 2324 157 39 14 chr6 130950307 130950722 -58328832 - MSTC LTR MaLR -3 425 1 975 98 0 0 chr6 130951157 130951279 -58328275 + FRAM SINE Alu 28 149 -27 449 317 50 22 chr6 130953879 130954059 -58325495 + L3b LINE CR1 1277 1461 -122 21 0 0 0 chr6 130954376 130954397 -58325157 + AT_rich Low_complexity Low_complexity 1 21 0 382 192 77 10 chr6 130954408 130954512 -58325042 - L1MA9 LINE L1 -22 6290 6180 604 281 50 41 chr6 130957272 130957493 -58322061 + MIR SINE MIR 40 262 0 2103 167 65 9 chr6 130957562 130957810 -58321744 - MLT1C LTR MaLR -2 624 391 315 0 0 0 chr6 130957810 130957845 -58321709 + (TG)n Simple_repeat Simple_repeat 2 36 0 2103 167 65 9 chr6 130957845 130958032 -58321522 - MLT1C LTR MaLR -235 391 1 232 274 168 0 chr6 130958880 130958975 -58320579 - L3 LINE CR1 -7 1570 1460 423 278 60 0 chr6 130959389 130959522 -58320032 - MIR SINE MIR -3 259 119 1549 252 91 18 chr6 130960499 130961375 -58318179 - L2 LINE L2 0 3313 2385 1839 204 142 34 chr6 130962105 130962635 -58316919 - MER77 LTR ERV1 -10 595 9 289 343 105 6 chr6 130963359 130963531 -58316023 + MIR SINE MIR 9 197 -65 229 347 20 0 chr6 130963577 130963675 -58315879 - L2 LINE L2 -1230 2084 1985 238 65 0 0 chr6 130963794 130963825 -58315729 - MLT2B2 LTR ERVL -8 507 477 1194 208 207 14 chr6 130963867 130964263 -58315291 - MLT2B2 LTR ERVL -34 520 1 29 47 0 0 chr6 130964426 130964469 -58315085 + AT_rich Low_complexity Low_complexity 1 43 0 728 245 164 0 chr6 130964909 130965117 -58314437 - MIR SINE MIR -8 254 13 313 247 196 64 chr6 130965134 130965340 -58314214 - MIR SINE MIR 0 262 29 1754 154 44 3 chr6 130965842 130966140 -58313414 - AluJb SINE Alu -2 310 1 24 0 0 0 chr6 130966343 130966367 -58313187 + AT_rich Low_complexity Low_complexity 1 24 0 2507 63 3 0 chr6 130967257 130967557 -58311997 + AluY SINE Alu 1 301 -10 261 386 9 0 chr6 130969098 130969212 -58310342 + MIR SINE MIR 37 151 -57 305 342 203 5 chr6 130969291 130969493 -58310061 - MIR SINE MIR -15 247 6 1701 130 0 46 chr6 130970211 130970472 -58309082 - AluJo SINE Alu -15 297 49 2367 65 0 0 chr6 130970916 130971210 -58308344 + AluY SINE Alu 1 294 -17 229 180 0 20 chr6 130971289 130971339 -58308215 + MER113 DNA MER1_type? 8 56 -465 28 29 0 0 chr6 130971346 130971381 -58308173 + AT_rich Low_complexity Low_complexity 1 35 0 2169 111 10 0 chr6 130972972 130973279 -58306275 - AluSx SINE Alu -2 310 1 23 33 0 0 chr6 130976043 130976073 -58303481 + AT_rich Low_complexity Low_complexity 1 30 0 432 213 21 11 chr6 130977810 130977904 -58301650 - L2 LINE L2 0 3272 3178 778 267 24 67 chr6 130978064 130978319 -58301235 + MIR SINE MIR 7 250 -12 71 0 0 0 chr6 130979161 130979232 -58300322 + AT_rich Low_complexity Low_complexity 1 71 0 198 0 0 0 chr6 130979426 130979448 -58300106 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 614 245 70 25 chr6 130980269 130980469 -58299085 + MIR SINE MIR 54 262 0 29 0 0 0 chr6 130980848 130980877 -58298677 + AT_rich Low_complexity Low_complexity 1 29 0 210 321 12 12 chr6 130981247 130981331 -58298223 + CT-rich Low_complexity Low_complexity 2 85 0 438 273 31 28 chr6 130982870 130983009 -58296545 + MER5A DNA MER1_type 33 180 -9 203 220 0 20 chr6 130984094 130984144 -58295410 + L2 LINE L2 3168 3216 -97 219 69 0 0 chr6 130984214 130984243 -58295311 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 698 187 86 37 chr6 130984719 130984906 -58294648 + MIR SINE MIR 6 201 -61 2462 64 0 10 chr6 130985040 130985351 -58294203 - AluY SINE Alu -3 308 1 399 321 108 65 chr6 130985359 130985895 -58293659 - L2 LINE L2 -20 3252 2705 253 230 66 66 chr6 130985943 130986095 -58293459 - L1ME3A LINE L1 -51 6119 5968 2507 70 0 3 chr6 130986224 130986536 -58293018 + AluY SINE Alu 1 311 0 251 54 27 0 chr6 130986923 130986960 -58292594 + (TG)n Simple_repeat Simple_repeat 2 39 0 249 150 250 0 chr6 130988350 130988410 -58291144 + MER112 DNA MER1_type 1 75 -185 194 157 0 20 chr6 130988412 130988463 -58291091 + T-rich Low_complexity Low_complexity 5 54 0 2641 126 50 24 chr6 130988473 130988935 -58290619 - L1PA16 LINE L1 -3 6163 5690 234 270 145 26 chr6 130988960 130989112 -58290442 + MER112 DNA MER1_type 69 238 -22 1260 179 21 13 chr6 130989860 130990094 -58289460 - MLT1C LTR MaLR 0 467 232 2372 68 3 0 chr6 130990192 130990484 -58289070 - AluSp SINE Alu -20 293 1 2171 260 96 29 chr6 130990484 130991512 -58288042 - HAL1 LINE L1 -357 2150 1054 369 306 16 8 chr6 130991517 130991638 -58287916 - HAL1 LINE L1 -1550 957 836 1707 202 112 22 chr6 130991653 130992099 -58287455 - MLT1D LTR MaLR -19 486 1 423 0 0 0 chr6 130992122 130992169 -58287385 + (TG)n Simple_repeat Simple_repeat 2 48 0 32 26 0 0 chr6 130992331 130992370 -58287184 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr6 130993303 130993335 -58286219 + AT_rich Low_complexity Low_complexity 1 32 0 2366 180 76 14 chr6 130993630 130994141 -58285413 - MER67A LTR ERV1 0 543 1 351 247 185 39 chr6 130994573 130994751 -58284803 + MIR SINE MIR 48 251 -11 686 214 29 23 chr6 130996018 130996191 -58283363 + MLT1A2 LTR MaLR 1 174 -200 924 172 27 27 chr6 130996251 130996437 -58283117 + MLT1A2 LTR MaLR 189 374 0 5253 188 82 37 chr6 130996989 130997206 -58282348 - Charlie1a DNA MER1_type -1309 1452 1246 258 32 0 0 chr6 130997206 130997237 -58282317 + (TA)n Simple_repeat Simple_repeat 2 32 0 1630 159 68 20 chr6 130997237 130997533 -58282021 - AluJo SINE Alu -2 310 1 5253 188 82 37 chr6 130997533 130998703 -58280851 - Charlie1a DNA MER1_type -1514 1247 1 625 252 126 28 chr6 131000329 131000583 -58278971 - L2 LINE L2 -1 3312 3034 1393 253 52 9 chr6 131000667 131001110 -58278444 + Charlie4a DNA MER1_type 39 500 -8 2189 40 0 0 chr6 131001363 131001660 -58277894 - AluY SINE Alu 0 331 35 202 272 210 0 chr6 131003411 131003492 -58276062 - MIR SINE MIR -6 256 159 2283 110 0 0 chr6 131003679 131003987 -58275567 + AluSx SINE Alu 1 308 -4 24 0 0 0 chr6 131004159 131004183 -58275371 + AT_rich Low_complexity Low_complexity 1 24 0 2644 26 0 13 chr6 131005439 131005747 -58273807 + AluY SINE Alu 1 304 -7 1653 86 0 0 chr6 131006319 131006528 -58273026 - AluY SINE Alu -17 294 86 460 279 74 0 chr6 131008115 131008237 -58271317 - L2 LINE L2 -5 3267 3137 208 297 9 108 chr6 131008939 131009050 -58270504 - MER5B DNA MER1_type -78 100 1 300 54 0 0 chr6 131009561 131009598 -58269956 - L1PA16 LINE L1 -105 6061 6025 21 0 0 0 chr6 131013457 131013478 -58266076 + AT_rich Low_complexity Low_complexity 1 21 0 632 178 0 0 chr6 131015607 131015714 -58263840 + FRAM SINE Alu 40 146 -30 771 204 12 19 chr6 131016075 131016237 -58263317 - FRAM SINE Alu -18 158 1 610 242 0 0 chr6 131016412 131016536 -58263018 + MER94 DNA DNA 10 133 -1 202 279 16 0 chr6 131016617 131016678 -58262876 - MIR3 SINE MIR -32 176 115 306 261 35 99 chr6 131017109 131017251 -58262303 - HAL1 LINE L1 -14 2493 2361 290 318 143 0 chr6 131017428 131017554 -58262000 - HAL1 LINE L1 -2363 144 1 1096 277 146 8 chr6 131017593 131018082 -58261472 - L2 LINE L2 -11 3302 2748 510 220 131 18 chr6 131018082 131018250 -58261304 - L2 LINE L2 -894 2420 2234 292 345 74 30 chr6 131018293 131018496 -58261058 - L2 LINE L2 -338 2976 2765 246 357 196 0 chr6 131018784 131018927 -58260627 - L2 LINE L2 -556 2758 2588 180 339 9 55 chr6 131019178 131019287 -58260267 - L2 LINE L2 -356 2916 2813 330 264 66 19 chr6 131020092 131020198 -58259356 + L2 LINE L2 3148 3258 -14 211 224 0 17 chr6 131020216 131020274 -58259280 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 2197 161 6 8 chr6 131020315 131020681 -58258873 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr6 131021292 131021315 -58258239 + AT_rich Low_complexity Low_complexity 1 23 0 270 209 30 15 chr6 131021580 131021647 -58257907 - MIR SINE MIR -117 145 78 1802 156 10 3 chr6 131021886 131022187 -58257367 + AluJb SINE Alu 1 303 -9 411 227 0 0 chr6 131022890 131022965 -58256589 - MIR3 SINE MIR -10 198 124 26 0 0 0 chr6 131023197 131023223 -58256331 + AT_rich Low_complexity Low_complexity 1 26 0 300 309 64 35 chr6 131023736 131024085 -58255469 - L2 LINE L2 -201 3071 2702 348 278 80 6 chr6 131024338 131024514 -58255040 - L1ME3A LINE L1 -223 5947 5759 4722 123 23 38 chr6 131024689 131025507 -58254047 - L1MC1 LINE L1 0 6333 5528 346 356 162 0 chr6 131025658 131025905 -58253649 - L2 LINE L2 -832 2482 2196 852 212 55 25 chr6 131025911 131026123 -58253431 - MIR SINE MIR 0 262 48 196 324 69 0 chr6 131026158 131026260 -58253294 - L2 LINE L2 -1192 2122 2014 34 55 0 0 chr6 131026421 131026476 -58253078 + AT_rich Low_complexity Low_complexity 1 55 0 433 275 85 47 chr6 131027021 131027279 -58252275 - L2 LINE L2 0 3313 3046 35 0 0 0 chr6 131028739 131028774 -58250780 + AT_rich Low_complexity Low_complexity 1 35 0 256 236 8 8 chr6 131029823 131029950 -58249604 + GA-rich Low_complexity Low_complexity 2 128 0 244 145 48 32 chr6 131030755 131030817 -58248737 + T-rich Low_complexity Low_complexity 3 65 0 255 146 0 0 chr6 131031246 131031301 -58248253 + (TC)n Simple_repeat Simple_repeat 1 55 0 1913 175 34 3 chr6 131031331 131031685 -58247869 + MLT1A1 LTR MaLR 1 365 0 2103 127 116 0 chr6 131031868 131032229 -58247325 + MER57A LTR ERV1 1 403 0 258 307 51 73 chr6 131035147 131035284 -58244270 + L2 LINE L2 3180 3313 0 214 351 153 10 chr6 131035557 131035759 -58243795 - L2 LINE L2 -2816 498 268 303 304 39 10 chr6 131036545 131036647 -58242907 - MIR SINE MIR -50 212 108 190 266 38 38 chr6 131038477 131038556 -58240998 - MIR SINE MIR -23 239 161 260 224 0 0 chr6 131040109 131040167 -58239387 - L1MC5 LINE L1 -64 7897 7840 374 300 62 25 chr6 131040632 131040792 -58238762 - L2 LINE L2 -650 2664 2499 1955 152 7 0 chr6 131041240 131041530 -58238024 - AluJb SINE Alu -20 292 1 188 329 55 0 chr6 131042245 131042318 -58237236 - MIR SINE MIR -123 139 63 1683 173 3 24 chr6 131043323 131043618 -58235936 + AluJo SINE Alu 6 294 -18 232 311 30 22 chr6 131043784 131043919 -58235635 - L1ME3A LINE L1 -29 6141 6006 1339 281 76 8 chr6 131044014 131044657 -58234897 - L1ME3A LINE L1 -219 5951 5265 513 222 125 90 chr6 131044657 131045118 -58234436 - L2 LINE L2 -2 3311 2747 2224 92 77 2 chr6 131045136 131045619 -58233935 - MER1A DNA MER1_type 0 529 1 1746 160 49 6 chr6 131046110 131046435 -58233119 + MER2 DNA MER2_type 7 345 0 517 267 100 11 chr6 131046480 131046660 -58232894 + MIR SINE MIR 18 213 -49 1733 231 42 13 chr6 131047061 131047512 -58232042 - LTR40c LTR ERVL 0 465 2 28 48 0 0 chr6 131048042 131048084 -58231470 + AT_rich Low_complexity Low_complexity 1 42 0 2325 104 0 0 chr6 131048800 131049108 -58230446 + AluSg SINE Alu 1 308 -2 3199 256 87 49 chr6 131049287 131049389 -58230165 + HAL1 LINE L1 67 164 -2343 1544 187 16 13 chr6 131049389 131049699 -58229855 + AluJb SINE Alu 1 311 -1 3199 256 87 49 chr6 131049699 131051005 -58228549 + HAL1 LINE L1 164 1528 -979 566 279 12 0 chr6 131051018 131051183 -58228371 + HAL1 LINE L1 1655 1821 -686 23 0 0 0 chr6 131051254 131051277 -58228277 + AT_rich Low_complexity Low_complexity 1 23 0 560 218 54 0 chr6 131051332 131051479 -58228075 + MLT1F1 LTR MaLR 1 155 -412 323 189 60 103 chr6 131051514 131051596 -58227958 + HAL1 LINE L1 2212 2296 -211 2364 81 0 0 chr6 131051596 131051892 -58227662 + AluSg SINE Alu 1 296 -14 323 189 60 103 chr6 131051892 131051994 -58227560 + HAL1 LINE L1 2296 2388 -119 292 291 70 38 chr6 131052802 131053041 -58226513 - L2 LINE L2 -222 3050 2784 692 219 74 19 chr6 131053241 131053497 -58226057 - L1MC5 LINE L1 -47 7914 7645 2089 59 0 35 chr6 131053533 131053758 -58225796 - L1PB1 LINE L1 0 6151 5937 2376 94 0 0 chr6 131053758 131054057 -58225497 - AluSq SINE Alu -14 299 1 2089 59 0 35 chr6 131054057 131054117 -58225437 - L1PB1 LINE L1 -214 5937 5876 4527 165 33 2 chr6 131054285 131055341 -58224213 - L1MB3 LINE L1 -3 6180 5097 2405 59 0 23 chr6 131055348 131055653 -58223901 - AluY SINE Alu -13 298 1 1432 88 23 5 chr6 131055777 131055994 -58223560 - L1MA5A LINE L1 -5 6292 6072 465 215 29 91 chr6 131056247 131056363 -58223191 - L1MC4a LINE L1 -1873 5935 5840 1605 194 17 7 chr6 131056363 131056656 -58222898 - AluJb SINE Alu -16 296 1 465 215 29 91 chr6 131056656 131056781 -58222773 - L1MC4a LINE L1 -1968 5840 5709 320 194 137 40 chr6 131056811 131056935 -58222619 - L1MC5 LINE L1 -172 7789 7654 322 333 111 7 chr6 131057673 131057808 -58221746 - L2 LINE L2 -26 3246 3098 229 339 110 52 chr6 131057866 131058429 -58221125 - L2 LINE L2 -429 2885 2290 183 354 0 0 chr6 131058908 131058973 -58220581 - MIR SINE MIR -96 112 48 231 266 46 28 chr6 131059067 131059176 -58220378 - L2 LINE L2 -1583 1731 1621 23 33 0 0 chr6 131059307 131059337 -58220217 + AT_rich Low_complexity Low_complexity 1 30 0 513 346 160 19 chr6 131060887 131061462 -58218092 + L2 LINE L2 1753 2408 -906 301 261 27 18 chr6 131062285 131062396 -58217158 - MLT1K LTR MaLR -3 585 474 276 53 0 0 chr6 131062513 131062551 -58217003 + (GA)n Simple_repeat Simple_repeat 1 38 0 10801 95 6 2 chr6 131062944 131065252 -58214302 - L1PA8 LINE L1 -7 6165 3820 11514 98 3 64 chr6 131065253 131067300 -58212254 + L1PA8 LINE L1 1900 3822 -2324 185 59 59 0 chr6 131068411 131068445 -58211109 + A-rich Low_complexity Low_complexity 5 40 0 767 202 82 0 chr6 131068766 131068965 -58210589 + Charlie5 DNA MER1_type 1 200 -2412 428 185 46 0 chr6 131068963 131069071 -58210483 + Charlie5 DNA MER1_type 2352 2464 -148 * 727 174 7 22 chr6 131069071 131069209 -58210345 + AluJo SINE Alu 1 136 -176 442 122 68 27 chr6 131069228 131069375 -58210179 + Charlie5 DNA MER1_type 2449 2601 -11 306 50 0 0 chr6 131070119 131070159 -58209395 + (GA)n Simple_repeat Simple_repeat 1 40 0 1392 173 48 35 chr6 131070339 131070485 -58209069 - AluJo SINE Alu -19 293 151 204 40 0 0 chr6 131070485 131070510 -58209044 + (TA)n Simple_repeat Simple_repeat 2 26 0 1392 173 48 35 chr6 131070510 131070652 -58208902 - AluJo SINE Alu -161 151 1 5337 92 13 13 chr6 131070653 131071527 -58208027 - L1MA3 LINE L1 -232 6073 5203 30 45 0 0 chr6 131071870 131071914 -58207640 + AT_rich Low_complexity Low_complexity 1 44 0 489 357 118 47 chr6 131074169 131075493 -58204061 + L2 LINE L2 1852 3272 0 335 159 43 0 chr6 131075510 131075579 -58203975 + MLT1F1 LTR MaLR 9 80 -462 1373 171 89 46 chr6 131075605 131075932 -58203622 + MLT1F1 LTR MaLR 227 567 0 239 384 12 0 chr6 131076293 131076379 -58203175 + MIR SINE MIR 2 88 -174 34771 94 11 11 chr6 131076416 131082586 -58196968 + L1PA6 LINE L1 11 6169 0 1107 223 21 21 chr6 131082917 131083150 -58196404 + Tigger7 DNA MER2_type 32 264 -2223 417 143 9 152 chr6 131083154 131083266 -58196288 + Tigger7 DNA MER2_type 2390 2485 -2 296 350 17 8 chr6 131083373 131083490 -58196064 - MIR3 SINE MIR -7 201 84 24 0 0 0 chr6 131083613 131083637 -58195917 + AT_rich Low_complexity Low_complexity 1 24 0 235 253 44 77 chr6 131083716 131083807 -58195747 - L2 LINE L2 -1 3271 3184 211 288 7 131 chr6 131083999 131084152 -58195402 - L2 LINE L2 -593 2721 2588 6345 153 23 30 chr6 131084274 131085836 -58193718 + L1PB3 LINE L1 4039 5612 -542 1788 155 3 21 chr6 131085836 131086127 -58193427 - AluJb SINE Alu -21 291 6 6345 153 23 30 chr6 131086127 131086640 -58192914 + L1PB3 LINE L1 5612 6100 -54 300 91 0 0 chr6 131086640 131086684 -58192870 + (TA)n Simple_repeat Simple_repeat 2 45 0 6345 153 23 30 chr6 131086684 131086733 -58192821 + L1PB3 LINE L1 6100 6148 -6 24 53 0 0 chr6 131086733 131086771 -58192783 + AT_rich Low_complexity Low_complexity 1 38 0 484 312 77 14 chr6 131089364 131089585 -58189969 + MIR SINE MIR 1 235 -27 262 297 246 14 chr6 131090061 131090199 -58189355 - MIR SINE MIR -63 199 30 942 168 150 22 chr6 131092123 131092205 -58187349 + ORSL DNA AcHobo 1 71 -204 471 107 0 0 chr6 131092205 131092280 -58187274 + (TA)n Simple_repeat Simple_repeat 1 75 0 942 168 150 22 chr6 131092280 131092423 -58187131 + ORSL DNA AcHobo 71 255 -20 1766 187 19 16 chr6 131092430 131092794 -58186760 - MLT1A1 LTR MaLR 0 365 1 183 156 0 0 chr6 131092926 131092958 -58186596 + (TATATG)n Simple_repeat Simple_repeat 3 34 0 2969 232 72 19 chr6 131093166 131093934 -58185620 + MER21B LTR ERV1 12 819 -44 387 265 191 12 chr6 131094693 131094855 -58184699 - LTR16A1 LTR ERVL 0 457 267 760 235 11 17 chr6 131096074 131096253 -58183301 - MER5B DNA MER1_type 0 178 1 256 271 24 12 chr6 131096329 131096414 -58183140 + MER63 DNA MER1_type 1 712 -124 330 95 0 95 chr6 131096554 131096617 -58182937 - MLT2B3 LTR ERVL 0 520 464 195 129 0 0 chr6 131096625 131096656 -58182898 + (TG)n Simple_repeat Simple_repeat 2 32 0 2371 174 43 73 chr6 131096762 131097306 -58182248 - MLT2B3 LTR ERVL -40 508 1 338 280 194 47 chr6 131097306 131097538 -58182016 + MLT1H1 LTR MaLR 1 266 -289 249 83 0 0 chr6 131097556 131097592 -58181962 + (GA)n Simple_repeat Simple_repeat 1 36 0 356 260 96 14 chr6 131097760 131097933 -58181621 + MLT1H1 LTR MaLR 357 555 0 386 295 179 6 chr6 131098309 131098465 -58181089 + MER5A DNA MER1_type 2 184 -5 1190 180 0 0 chr6 131098472 131098661 -58180893 - MER5A DNA MER1_type 0 189 1 220 250 0 0 chr6 131098700 131098748 -58180806 + MER5A DNA MER1_type 57 104 -85 411 310 81 19 chr6 131098775 131099033 -58180521 - L1M4 LINE L1 -1609 4537 4264 236 237 0 0 chr6 131099039 131099098 -58180456 + L1MC5 LINE L1 7153 7211 -750 989 269 87 35 chr6 131099228 131099848 -58179706 + L1MC5 LINE L1 7262 7913 -48 519 294 84 42 chr6 131099910 131100315 -58179239 - HAL1b LINE L1 -703 645 224 191 345 71 12 chr6 131100473 131100557 -58178997 - MIR SINE MIR -71 191 103 264 252 83 13 chr6 131100634 131100751 -58178803 + MIR3 SINE MIR 66 194 -14 21 0 0 0 chr6 131100959 131100980 -58178574 + AT_rich Low_complexity Low_complexity 1 21 0 555 293 17 23 chr6 131101969 131102143 -58177411 - MER5B DNA MER1_type -5 173 1 2180 163 110 30 chr6 131102411 131102780 -58176774 + MER34 LTR ERV1 1 422 -120 2504 46 7 0 chr6 131102780 131103084 -58176470 + AluY SINE Alu 1 306 -5 2180 163 110 30 chr6 131103084 131103216 -58176338 + MER34 LTR ERV1 422 542 0 1130 75 0 12 chr6 131103356 131103516 -58176038 + L1PA8 LINE L1 6009 6166 -6 378 0 0 0 chr6 131106447 131106489 -58173065 + (TA)n Simple_repeat Simple_repeat 2 43 0 193 85 0 43 chr6 131107393 131107440 -58172114 + (TTTAA)n Simple_repeat Simple_repeat 3 47 0 788 118 0 15 chr6 131107811 131107946 -58171608 - FLAM_C SINE Alu 0 133 1 341 286 163 11 chr6 131109156 131109334 -58170220 + LTR41 LTR ERVL 1 205 -568 446 264 101 69 chr6 131109489 131109765 -58169789 + LTR41 LTR ERVL 479 763 -10 227 330 32 21 chr6 131110772 131110866 -58168688 - MIR SINE MIR -63 145 50 209 297 119 10 chr6 131112034 131112135 -58167419 + MIR SINE MIR 24 135 -73 236 345 37 21 chr6 131112612 131112803 -58166751 + L3b LINE CR1 1138 1331 -252 243 220 40 0 chr6 131113320 131113370 -58166184 + polypyrimidine Low_complexity Low_complexity 1 52 0 1439 153 8 35 chr6 131114271 131114532 -58165022 - AluJb SINE Alu -7 305 52 272 234 0 78 chr6 131115036 131115113 -58164441 + MIR SINE MIR 110 180 -82 30 27 0 0 chr6 131117862 131117899 -58161655 + AT_rich Low_complexity Low_complexity 1 37 0 279 0 0 0 chr6 131119696 131119727 -58159827 + (GA)n Simple_repeat Simple_repeat 2 32 0 369 145 0 0 chr6 131120636 131120698 -58158856 + (TA)n Simple_repeat Simple_repeat 1 62 0 580 282 61 16 chr6 131122065 131122309 -58157245 + MIR SINE MIR 6 262 0 262 278 68 30 chr6 131122508 131122641 -58156913 - MIR SINE MIR -70 192 55 1363 202 79 35 chr6 131123588 131123930 -58155624 + MLT1A1 LTR MaLR 7 363 -2 1830 144 59 0 chr6 131124183 131124488 -58155066 - MER47A DNA MER2_type 0 366 44 23 0 0 0 chr6 131124516 131124539 -58155015 + AT_rich Low_complexity Low_complexity 1 23 0 2113 108 3 7 chr6 131124547 131124834 -58154720 + AluSx SINE Alu 1 286 -26 835 155 17 22 chr6 131124942 131125123 -58154431 - L1MA4A LINE L1 -25 6278 6099 2164 115 0 0 chr6 131125238 131125524 -58154030 + AluSq SINE Alu 1 286 -27 414 0 0 0 chr6 131125525 131125571 -58153983 + (TA)n Simple_repeat Simple_repeat 1 46 0 207 0 0 0 chr6 131125570 131125593 -58153961 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 22 35 0 0 chr6 131125596 131125625 -58153929 + AT_rich Low_complexity Low_complexity 1 29 0 645 244 87 83 chr6 131125876 131126106 -58153448 + MIR SINE MIR 11 241 -21 289 247 27 0 chr6 131126359 131126432 -58153122 + MER74B LTR ERVL 1 75 -547 952 272 33 4 chr6 131126447 131126723 -58152831 + MER74B LTR ERVL 214 497 -125 1953 218 19 79 chr6 131126841 131127039 -58152515 - L1MC3 LINE L1 -179 5985 5777 296 73 0 0 chr6 131127039 131127080 -58152474 + MADE1 DNA Mariner 1 41 -39 1953 218 19 79 chr6 131127080 131127474 -58152080 - L1MC3 LINE L1 -387 5777 5434 249 250 132 21 chr6 131127577 131127721 -58151833 - HAL1 LINE L1 -753 1754 1595 295 309 102 23 chr6 131127726 131128083 -58151471 - L1M4c LINE L1 -971 1772 1262 2514 55 0 0 chr6 131128337 131128644 -58150910 + AluY SINE Alu 1 307 -4 370 296 209 10 chr6 131130052 131130258 -58149296 + MIR SINE MIR 15 261 -1 336 284 155 7 chr6 131131047 131131202 -58148352 - MIR SINE MIR -11 251 74 215 337 37 123 chr6 131131630 131131980 -58147574 + L2 LINE L2 2941 3260 -12 1891 168 14 0 chr6 131132484 131132781 -58146773 - AluSx SINE Alu -11 301 1 471 284 179 5 chr6 131133969 131134170 -58145384 + MIR SINE MIR 21 256 -6 357 255 31 71 chr6 131135124 131135254 -58144300 + MIR SINE MIR 33 165 -56 181 313 31 0 chr6 131135598 131135662 -58143892 + MIR SINE MIR 42 107 -101 247 299 93 19 chr6 131137335 131137442 -58142112 - MIR SINE MIR -125 137 23 2165 161 14 125 chr6 131138085 131138652 -58140902 + MLT1D LTR MaLR 2 505 0 23 54 0 0 chr6 131138802 131138839 -58140715 + AT_rich Low_complexity Low_complexity 1 37 0 189 0 0 0 chr6 131140234 131140255 -58139299 + (T)n Simple_repeat Simple_repeat 1 21 0 2463 178 5 92 chr6 131140418 131141019 -58138535 - MER52A LTR ERV1 0 1755 1207 281 264 0 110 chr6 131141026 131141230 -58138324 - MER52A LTR ERV1 -356 1349 553 1116 213 3 78 chr6 131141270 131141744 -58137810 - MER52A LTR ERV1 -523 1232 660 200 273 0 0 chr6 131142130 131142174 -58137380 + GA-rich Low_complexity Low_complexity 5 48 0 1643 143 87 36 chr6 131142424 131142781 -58136773 - THE1C LTR MaLR 0 375 1 461 347 40 12 chr6 131142875 131143048 -58136506 - MIR3 SINE MIR -8 200 23 1222 267 88 26 chr6 131143082 131143501 -58136053 - L2 LINE L2 0 3313 2869 1116 139 93 19 chr6 131143507 131143722 -58135832 + MSTC LTR MaLR 198 428 0 453 217 133 36 chr6 131143737 131143903 -58135651 - L2 LINE L2 -473 2841 2660 2276 124 21 13 chr6 131144484 131144856 -58134698 - THE1C LTR MaLR 0 375 1 267 243 146 39 chr6 131145429 131145532 -58134022 + L2 LINE L2 2364 2477 -837 326 340 14 20 chr6 131147776 131147923 -58131631 - MIR3 SINE MIR -5 203 58 496 141 10 10 chr6 131150188 131150287 -58129267 + CT-rich Low_complexity Low_complexity 3 101 0 299 83 0 21 chr6 131150279 131150327 -58129227 + (TCCCC)n Simple_repeat Simple_repeat 1 47 0 * 1624 188 7 3 chr6 131150327 131150614 -58128940 - AluJo SINE Alu -24 288 1 1944 141 7 3 chr6 131150640 131150930 -58128624 - AluSx SINE Alu -21 291 1 956 244 139 38 chr6 131151167 131151614 -58127940 - MLT1J LTR MaLR -9 502 11 276 241 23 58 chr6 131151684 131151771 -58127783 + MIR SINE MIR 85 168 -94 206 380 20 0 chr6 131151829 131151929 -58127625 + L2 LINE L2 704 805 -2509 268 341 65 52 chr6 131152199 131152481 -58127073 - L2 LINE L2 -205 3067 2794 357 296 75 16 chr6 131152921 131153107 -58126447 + L2 LINE L2 2151 2347 -967 282 333 65 22 chr6 131153171 131153309 -58126245 + L2 LINE L2 2528 2671 -643 502 256 58 0 chr6 131153660 131153743 -58125811 + MIR SINE MIR 71 148 -114 408 216 90 30 chr6 131153743 131153910 -58125644 + MER104 DNA MER2_type 4 180 0 502 256 58 0 chr6 131153910 131153998 -58125556 + MIR SINE MIR 148 252 -10 2263 102 0 0 chr6 131154425 131154720 -58124834 - AluSx SINE Alu -17 295 1 22 35 0 0 chr6 131156390 131156419 -58123135 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 131156947 131156968 -58122586 + AT_rich Low_complexity Low_complexity 1 21 0 275 323 36 24 chr6 131157272 131157439 -58122115 + L1ME4a LINE L1 5533 5701 -420 306 254 107 25 chr6 131157676 131157798 -58121756 + L1ME4a LINE L1 5982 6113 -8 657 207 49 0 chr6 131158007 131158171 -58121383 - L1MA7 LINE L1 -121 6170 5999 949 204 141 40 chr6 131158171 131158498 -58121056 - L1 LINE L1 -2824 3322 2945 1604 176 6 40 chr6 131158498 131158821 -58120733 - AluJo SINE Alu 0 312 1 949 204 141 40 chr6 131158821 131158896 -58120658 - L1 LINE L1 -3201 2945 2879 1762 115 58 26 chr6 131158900 131159073 -58120481 + L1MA9 LINE L1 5986 6175 -137 195 42 0 0 chr6 131159073 131159097 -58120457 + (CA)n Simple_repeat Simple_repeat 1 24 0 1762 115 58 26 chr6 131159097 131159235 -58120319 + L1MA9 LINE L1 6175 6307 -5 1072 139 12 6 chr6 131161331 131161503 -58118051 - FRAM SINE Alu -4 172 1 273 304 71 43 chr6 131161748 131162074 -58117480 - L1ME4a LINE L1 -13 6108 5774 295 128 64 0 chr6 131162224 131162271 -58117283 + L2 LINE L2 3222 3271 -1 481 288 46 0 chr6 131162307 131162460 -58117094 - L1ME4a LINE L1 -477 5644 5485 258 384 111 42 chr6 131162666 131162955 -58116599 - L2 LINE L2 -50 3222 2914 252 122 0 0 chr6 131163209 131163250 -58116304 + (TG)n Simple_repeat Simple_repeat 2 42 0 237 350 38 0 chr6 131163303 131163383 -58116171 - L2 LINE L2 -672 2642 2560 207 287 160 13 chr6 131163495 131163645 -58115909 - L2 LINE L2 -927 2387 2216 25 31 0 0 chr6 131164228 131164260 -58115294 + AT_rich Low_complexity Low_complexity 1 32 0 203 152 22 0 chr6 131164476 131164522 -58115032 + GA-rich Low_complexity Low_complexity 3 49 0 1474 79 84 9 chr6 131164798 131165012 -58114542 + MER30 DNA MER1_type 1 230 0 2864 70 0 0 chr6 131165162 131165517 -58114037 - THE1A LTR MaLR 0 355 1 866 134 0 15 chr6 131166523 131166657 -58112897 + FLAM_C SINE Alu 1 132 -1 221 279 15 0 chr6 131167160 131167228 -58112326 - L2 LINE L2 -46 3267 3199 242 358 30 61 chr6 131167513 131167678 -58111876 + L2 LINE L2 2596 2755 -559 1708 161 99 65 chr6 131169147 131169209 -58110345 - MSTB1 LTR MaLR -2 430 372 2554 54 0 0 chr6 131169209 131169503 -58110051 + AluY SINE Alu 2 295 -16 1708 161 99 65 chr6 131169503 131169856 -58109698 - MSTB1 LTR MaLR -60 372 1 28 29 0 0 chr6 131169865 131169900 -58109654 + AT_rich Low_complexity Low_complexity 1 35 0 296 348 19 51 chr6 131169910 131170068 -58109486 - MER5B DNA MER1_type -25 153 1 333 206 151 0 chr6 131171169 131171242 -58108312 + L2 LINE L2 3230 3313 0 267 275 101 0 chr6 131172920 131173029 -58106525 + L2 LINE L2 1705 1824 -1490 225 121 69 0 chr6 131173403 131173461 -58106093 + (TA)n Simple_repeat Simple_repeat 1 62 0 23 33 0 0 chr6 131173680 131173710 -58105844 + AT_rich Low_complexity Low_complexity 1 30 0 319 317 58 0 chr6 131174095 131174215 -58105339 + L2 LINE L2 3187 3313 0 1836 147 0 63 chr6 131174257 131174576 -58104978 - AluJb SINE Alu -13 299 1 201 171 0 0 chr6 131175741 131175776 -58103778 + A-rich Low_complexity Low_complexity 1 35 0 381 22 0 0 chr6 131176150 131176196 -58103358 + (TG)n Simple_repeat Simple_repeat 1 46 0 1097 148 88 18 chr6 131176366 131176583 -58102971 - MER96B DNA MER1_type? -177 240 9 321 256 12 0 chr6 131177565 131177647 -58101907 + MIR SINE MIR 78 160 -102 30 0 0 0 chr6 131177819 131177849 -58101705 + AT_rich Low_complexity Low_complexity 1 30 0 569 268 39 13 chr6 131177952 131178105 -58101449 + LTR16A LTR ERVL 225 381 -69 2052 148 30 33 chr6 131178381 131178746 -58100808 - THE1B LTR MaLR 0 364 1 1198 261 97 16 chr6 131178746 131179469 -58100085 + L1M4 LINE L1 3703 4512 -1634 1952 115 118 18 chr6 131179483 131179814 -58099740 - THE1B LTR MaLR 0 364 1 2612 96 0 0 chr6 131179814 131180159 -58099395 - THE1B-int LTR MaLR 0 1580 1236 * 5311 85 34 1 chr6 131180155 131180918 -58098636 + L1PB1 LINE L1 5360 6147 -4 3743 163 6 2 chr6 131181062 131181694 -58097860 - MER41B LTR ERV1 0 635 1 4945 230 33 38 chr6 131182036 131183501 -58096053 + L1PA12 LINE L1 781 2252 -3951 2072 117 0 17 chr6 131183501 131183799 -58095755 + AluSg SINE Alu 1 293 -17 4945 230 33 38 chr6 131183799 131183936 -58095618 + L1PA12 LINE L1 2252 2388 -3815 2362 97 0 3 chr6 131183936 131184244 -58095310 - AluSg SINE Alu -3 307 1 4945 230 33 38 chr6 131184244 131185119 -58094435 + L1PA12 LINE L1 2388 3258 -2945 1979 157 0 0 chr6 131185119 131185431 -58094123 - AluJb SINE Alu 0 312 1 4945 230 33 38 chr6 131185431 131185590 -58093964 + L1PA12 LINE L1 3258 3416 -2787 524 259 104 92 chr6 131185595 131185767 -58093787 + L2 LINE L2 376 544 -2770 201 39 0 0 chr6 131185767 131185793 -58093761 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1524 193 7 27 chr6 131185797 131186093 -58093461 - AluJo SINE Alu -22 290 1 640 229 0 0 chr6 131186095 131186226 -58093328 - AluJo/FLAM SINE Alu -171 131 1 524 259 104 92 chr6 131186226 131186296 -58093258 + L2 LINE L2 546 629 -2685 968 283 51 29 chr6 131186296 131186670 -58092884 + L1MDa LINE L1 17 398 -6142 228 325 12 0 chr6 131187135 131187215 -58092339 + L1MDa LINE L1 908 988 -5555 1701 221 107 26 chr6 131187311 131187927 -58091627 + L1MDa LINE L1 1002 1667 -4873 623 254 36 18 chr6 131187952 131188176 -58091378 + L1MDa LINE L1 3167 3394 -3146 4804 133 42 0 chr6 131188176 131188933 -58090621 + L1PA8A LINE L1 5340 6128 -3 2098 138 0 3 chr6 131188977 131189288 -58090266 + AluSx SINE Alu 1 310 -2 1738 257 46 13 chr6 131189306 131189933 -58089621 + L1MDa LINE L1 3408 4055 -2485 2043 112 3 60 chr6 131190186 131190576 -58088978 - AluSx SINE Alu 0 371 1 268 171 0 0 chr6 131190637 131190678 -58088876 - Alu SINE Alu -262 41 1 291 178 0 44 chr6 131191579 131191669 -58087885 + CT-rich Low_complexity Low_complexity 3 88 0 234 294 0 29 chr6 131193126 131193194 -58086360 - L3 LINE CR1 -4 1573 1508 308 253 209 0 chr6 131193291 131193382 -58086172 - MER81 DNA DNA 0 114 5 373 313 47 16 chr6 131193537 131193669 -58085885 - MIR3 SINE MIR -1 207 74 389 360 99 17 chr6 131193686 131193980 -58085574 + L2 LINE L2 2915 3232 -40 287 140 0 20 chr6 131193997 131194047 -58085507 - MER21B LTR ERV1 -17 846 798 1086 131 6 0 chr6 131194062 131194222 -58085332 - AluSg/x SINE Alu -15 297 137 2971 202 104 56 chr6 131194223 131195049 -58084505 - MER21A LTR ERV1 -62 869 4 2315 95 0 3 chr6 131195267 131195563 -58083991 - AluY SINE Alu -16 295 1 25 90 0 0 chr6 131195774 131195841 -58083713 + AT_rich Low_complexity Low_complexity 1 67 0 23 0 0 0 chr6 131196106 131196129 -58083425 + AT_rich Low_complexity Low_complexity 1 23 0 2155 120 10 0 chr6 131196400 131196700 -58082854 - AluSx SINE Alu -9 303 1 279 0 0 0 chr6 131198642 131198673 -58080881 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 1671 137 52 4 chr6 131198682 131198930 -58080624 - AluSx SINE Alu -52 260 1 195 129 0 0 chr6 131200316 131200347 -58079207 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 327 317 10 20 chr6 131200498 131200599 -58078955 + MIR SINE MIR 23 122 -140 366 302 9 9 chr6 131200737 131200843 -58078711 - L2 LINE L2 -188 3084 2979 348 382 119 21 chr6 131201020 131201692 -58077862 - L2 LINE L2 -570 2744 2007 2251 84 40 0 chr6 131201888 131202185 -58077369 - AluY SINE Alu -2 309 1 28 61 0 0 chr6 131202252 131202301 -58077253 + AT_rich Low_complexity Low_complexity 1 49 0 232 94 234 16 chr6 131202309 131202373 -58077181 + MER20B DNA MER1_type 523 600 -183 1946 130 27 3 chr6 131202748 131203040 -58076514 - AluSx SINE Alu -13 299 1 228 323 0 0 chr6 131203374 131203467 -58076087 + GA-rich Low_complexity Low_complexity 1 93 0 208 139 0 0 chr6 131204397 131204433 -58075121 + (TG)n Simple_repeat Simple_repeat 2 37 0 601 278 62 0 chr6 131204438 131204614 -58074940 - MIR SINE MIR -73 189 3 219 114 0 0 chr6 131205147 131205182 -58074372 + (GAA)n Simple_repeat Simple_repeat 1 35 0 237 159 0 0 chr6 131205859 131205903 -58073651 + (TG)n Simple_repeat Simple_repeat 2 45 0 2228 87 0 69 chr6 131206201 131206534 -58073020 - AluSg SINE Alu 0 310 1 1154 193 116 57 chr6 131206796 131207376 -58072178 - MER76 LTR ERV -19 669 3 363 189 33 67 chr6 131208190 131208280 -58071274 + Charlie1 DNA MER1_type 147 233 -2528 21 0 0 0 chr6 131208316 131208337 -58071217 + AT_rich Low_complexity Low_complexity 1 21 0 408 244 49 8 chr6 131208339 131208462 -58071092 + Charlie1 DNA MER1_type 2633 2760 -1 1605 91 23 0 chr6 131208644 131208864 -58070690 - AluSc SINE Alu -3 306 82 195 219 233 0 chr6 131209330 131209403 -58070151 - MER5C DNA MER1_type -234 90 1 301 333 183 21 chr6 131209529 131209769 -58069785 - L2 LINE L2 -433 2881 2603 2171 122 0 3 chr6 131209769 131210072 -58069482 + AluSx SINE Alu 8 309 -3 820 101 59 0 chr6 131210122 131210241 -58069313 + FRAM SINE Alu 41 166 -10 621 284 120 4 chr6 131210884 131211109 -58068445 + MIR SINE MIR 6 256 -6 215 233 0 0 chr6 131211862 131211905 -58067649 + (CAAAT)n Simple_repeat Simple_repeat 1 43 0 903 249 26 26 chr6 131212720 131212949 -58066605 + MIR SINE MIR 28 256 -6 31 26 0 0 chr6 131212954 131212992 -58066562 + AT_rich Low_complexity Low_complexity 1 38 0 2095 121 3 13 chr6 131213325 131213630 -58065924 + AluSx SINE Alu 1 302 -10 28 0 0 0 chr6 131214203 131214231 -58065323 + AT_rich Low_complexity Low_complexity 1 28 0 44473 37 1 1 chr6 131214241 131220408 -58059146 + L1PA3 LINE L1 1 6166 0 192 35 0 35 chr6 131220379 131220457 -58059097 + (TAA)n Simple_repeat Simple_repeat 3 79 0 256 148 19 0 chr6 131220607 131220661 -58058893 - L1MA10 LINE L1 -3 6331 6277 252 0 0 0 chr6 131220670 131220698 -58058856 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 2354 103 0 6 chr6 131220843 131221155 -58058399 + AluJb SINE Alu 1 310 -2 632 282 161 37 chr6 131221944 131222134 -58057420 - L2 LINE L2 -6 3307 3142 1793 168 7 3 chr6 131222134 131222420 -58057134 - AluJo SINE Alu -25 287 1 632 282 161 37 chr6 131222420 131222577 -58056977 - L2 LINE L2 -171 3142 2917 1673 111 0 0 chr6 131222702 131222928 -58056626 + AluSg/x SINE Alu 80 305 -5 2018 138 0 40 chr6 131224224 131224549 -58055005 + AluSx SINE Alu 1 312 0 285 304 58 22 chr6 131224861 131224999 -58054555 + HAL1 LINE L1 26 168 -2339 481 277 134 60 chr6 131225088 131225507 -58054047 + HAL1 LINE L1 507 956 -1551 414 259 78 49 chr6 131225529 131225685 -58053869 + HAL1 LINE L1 1050 1215 -1292 2333 72 7 3 chr6 131225685 131225990 -58053564 + AluSq SINE Alu 1 306 -7 414 259 78 49 chr6 131225990 131226038 -58053516 + HAL1 LINE L1 1215 1260 -1247 505 290 196 0 chr6 131226055 131226269 -58053285 - MIR SINE MIR 0 262 7 318 224 98 77 chr6 131226299 131226442 -58053112 + HAL1 LINE L1 1328 1473 -1034 189 0 0 0 chr6 131226458 131226479 -58053075 + (CA)n Simple_repeat Simple_repeat 2 22 0 339 242 61 10 chr6 131226484 131226583 -58052971 + HAL1 LINE L1 1812 1915 -592 227 224 61 0 chr6 131229670 131229719 -58049835 - Charlie7 DNA MER1_type -2532 80 29 548 295 73 14 chr6 131229950 131230319 -58049235 + L1MC/D LINE L1 4959 5349 -797 355 248 160 37 chr6 131230353 131230663 -58048891 + L1MC/D LINE L1 5414 5787 -392 393 242 38 15 chr6 131230712 131230844 -58048710 + L1MC4a LINE L1 5712 5846 -1962 308 229 107 46 chr6 131231241 131231372 -58048182 + MIR SINE MIR 76 214 -48 1311 148 64 40 chr6 131231390 131231613 -58047941 + MER33 DNA MER1_type 11 244 -2341 2543 57 3 16 chr6 131231613 131231928 -58047626 - AluSp SINE Alu -2 311 1 1311 148 64 40 chr6 131231928 131232002 -58047552 + MER33 DNA MER1_type 244 315 -9 24 103 0 0 chr6 131232039 131232126 -58047428 + AT_rich Low_complexity Low_complexity 1 87 0 189 0 0 0 chr6 131232549 131232570 -58046984 + (CA)n Simple_repeat Simple_repeat 2 22 0 398 119 0 0 chr6 131233200 131233259 -58046295 - MER103 DNA DNA -64 102 44 2111 137 0 6 chr6 131233353 131233667 -58045887 + AluSq SINE Alu 1 312 -1 514 287 28 56 chr6 131234014 131234230 -58045324 + MIR SINE MIR 51 260 -2 26 30 0 0 chr6 131234518 131234551 -58045003 + AT_rich Low_complexity Low_complexity 1 33 0 346 320 116 0 chr6 131234657 131234678 -58044876 - MIR SINE MIR 0 262 245 2357 101 0 0 chr6 131234678 131234974 -58044580 - AluSq SINE Alu -17 296 1 346 320 116 0 chr6 131234974 131235099 -58044455 - MIR SINE MIR -17 245 99 1887 130 84 0 chr6 131236436 131236720 -58042834 - AluJb SINE Alu -4 308 1 301 242 59 72 chr6 131237487 131237640 -58041914 + L1MEd LINE L1 809 959 -5160 1113 330 128 23 chr6 131238088 131238951 -58040603 + L2 LINE L2 207 1159 -2155 412 296 33 72 chr6 131239118 131239203 -58040351 + L1M4 LINE L1 4194 4281 -1865 1814 170 0 20 chr6 131239203 131239509 -58040045 + AluJo SINE Alu 1 300 -12 412 296 33 72 chr6 131239509 131239695 -58039859 + L1M4 LINE L1 4281 4452 -1694 2091 130 7 0 chr6 131239695 131239987 -58039567 + AluSx SINE Alu 3 296 -16 412 296 33 72 chr6 131239987 131240048 -58039506 + L1M4 LINE L1 4452 4514 -1632 436 361 59 32 chr6 131240050 131240574 -58038980 + L1M4 LINE L1 4582 5119 -1027 960 208 111 35 chr6 131240805 131241108 -58038446 + L1M4 LINE L1 4938 5271 -875 1686 171 0 55 chr6 131241108 131241435 -58038119 - AluJb SINE Alu -3 309 1 960 208 111 35 chr6 131241435 131241472 -58038082 + L1M4 LINE L1 5271 5304 -842 * 1272 209 20 42 chr6 131241463 131241870 -58037684 + L1MEd LINE L1 2409 2806 -3323 26 62 0 38 chr6 131242918 131242998 -58036556 + AT_rich Low_complexity Low_complexity 1 77 0 303 287 160 22 chr6 131243175 131243356 -58036198 - MIR SINE MIR -41 221 16 260 303 147 28 chr6 131243368 131243477 -58036077 + MIR3 SINE MIR 4 125 -83 23 0 0 0 chr6 131243557 131243580 -58035974 + AT_rich Low_complexity Low_complexity 1 23 0 2073 21 4 0 chr6 131244404 131244638 -58034916 - AluY SINE Alu -8 303 69 219 69 0 0 chr6 131244942 131244971 -58034583 + (TATG)n Simple_repeat Simple_repeat 2 30 0 2421 49 0 0 chr6 131244972 131245259 -58034295 - AluY SINE Alu -24 287 1 602 195 18 0 chr6 131245270 131245383 -58034171 - FRAM SINE Alu -24 152 38 676 284 206 23 chr6 131245439 131245622 -58033932 - L2 LINE L2 -5 3308 3160 2340 90 0 34 chr6 131245622 131245945 -58033609 + AluSx SINE Alu 1 312 0 676 284 206 23 chr6 131245945 131246210 -58033344 - L2 LINE L2 -153 3160 2783 1978 122 7 10 chr6 131246265 131246559 -58032995 + AluJb SINE Alu 1 293 -19 3996 154 40 19 chr6 131246816 131247568 -58031986 - LTR39 LTR ERV1 -15 768 1 232 301 16 57 chr6 131247601 131247724 -58031830 + HAL1 LINE L1 279 396 -2111 829 136 8 0 chr6 131247822 131247940 -58031614 + AluJb SINE Alu 1 119 -193 2028 198 50 36 chr6 131247940 131248465 -58031089 + MLT2B3 LTR ERVL 23 554 0 949 274 114 52 chr6 131248594 131249329 -58030225 + HAL1 LINE L1 510 1290 -1217 2140 144 0 3 chr6 131249441 131249754 -58029800 + AluJb SINE Alu 1 312 0 182 180 40 0 chr6 131249831 131249881 -58029673 + GA-rich Low_complexity Low_complexity 4 55 0 703 150 0 63 chr6 131249973 131250100 -58029454 + FLAM_C SINE Alu 1 119 -24 2319 161 71 11 chr6 131250115 131250567 -58028987 + MLT1D LTR MaLR 27 505 0 558 234 163 66 chr6 131250575 131251059 -58028495 + HAL1 LINE L1 1976 2506 -1 860 319 136 24 chr6 131251076 131251666 -58027888 - L2 LINE L2 -619 2695 2040 649 272 94 41 chr6 131251717 131252111 -58027443 + LTR16A LTR ERVL 16 430 -20 1477 191 68 63 chr6 131252113 131252554 -58027000 - LTR47B LTR ERVL 0 443 1 352 248 174 0 chr6 131252660 131252769 -58026785 - MER94 DNA DNA 0 134 7 336 230 20 40 chr6 131252809 131252909 -58026645 + MIR SINE MIR 37 134 -128 1516 216 40 11 chr6 131253010 131253078 -58026476 - MLT1A1 LTR MaLR -3 362 297 1446 163 132 9 chr6 131253078 131253404 -58026150 + MER47A DNA MER2_type 1 366 0 1516 216 40 11 chr6 131253404 131253687 -58025867 - MLT1A1 LTR MaLR -68 297 1 2625 176 68 9 chr6 131254093 131254621 -58024933 - MER89 LTR ERV1 0 559 1 3271 123 25 7 chr6 131254711 131255153 -58024401 + MER41B LTR ERV1 1 456 -179 2014 68 104 0 chr6 131255153 131255432 -58024122 + AluY SINE Alu 1 308 -3 3271 123 25 7 chr6 131255432 131255540 -58024014 + MER41B LTR ERV1 456 561 -74 2413 77 0 19 chr6 131255913 131256225 -58023329 + AluSc SINE Alu 1 306 -3 306 0 0 0 chr6 131256656 131256690 -58022864 + (CCG)n Simple_repeat Simple_repeat 3 36 0 1170 23 0 0 chr6 131257532 131257662 -58021892 + AluY SINE Alu 4 133 -178 1278 78 11 42 chr6 131257698 131257889 -58021665 + AluY SINE Alu 115 299 -12 24 0 0 0 chr6 131258322 131258346 -58021208 + AT_rich Low_complexity Low_complexity 1 24 0 267 167 0 0 chr6 131258656 131258704 -58020850 + Charlie7 DNA MER1_type 43 90 -2522 319 201 110 13 chr6 131258720 131258874 -58020680 + Charlie7 DNA MER1_type 2444 2612 0 25 31 0 0 chr6 131258933 131258965 -58020589 + AT_rich Low_complexity Low_complexity 1 32 0 2298 75 0 56 chr6 131259121 131259441 -58020113 - AluY SINE Alu -9 302 1 2140 131 0 6 chr6 131259443 131259757 -58019797 - AluSx SINE Alu 0 312 1 1624 197 57 37 chr6 131260352 131260808 -58018746 + L1ME1 LINE L1 5423 5887 -279 4001 117 7 3 chr6 131260839 131261439 -58018115 - L1PA14 LINE L1 -12 6149 5548 1649 155 16 53 chr6 131261439 131261762 -58017792 - AluJo SINE Alu -1 311 1 4962 142 23 1 chr6 131261764 131262830 -58016724 - L1P4 LINE L1 -674 5487 4398 738 218 87 16 chr6 131262834 131263086 -58016468 + L1ME1 LINE L1 5879 6148 -18 290 330 30 64 chr6 131263165 131263398 -58016156 + L2 LINE L2 2380 2604 -710 266 313 149 46 chr6 131263458 131263653 -58015901 + L2 LINE L2 2763 2977 -337 27 29 0 0 chr6 131265013 131265047 -58014507 + AT_rich Low_complexity Low_complexity 1 34 0 234 81 0 0 chr6 131265619 131265656 -58013898 + (CTATT)n Simple_repeat Simple_repeat 1 37 0 673 157 0 0 chr6 131265660 131265762 -58013792 - FLAM_C SINE Alu -24 119 18 256 279 13 38 chr6 131265802 131265881 -58013673 + L2 LINE L2 3194 3270 -2 2102 102 38 0 chr6 131265917 131266210 -58013344 + AluY SINE Alu 1 304 -7 1087 203 34 58 chr6 131266292 131266492 -58013062 + MER2 DNA MER2_type 28 231 -114 2196 99 3 0 chr6 131266492 131266800 -58012754 + AluSx SINE Alu 2 310 0 1087 203 34 58 chr6 131266800 131266836 -58012718 + MER2 DNA MER2_type 231 266 -79 616 246 0 0 chr6 131266836 131266962 -58012592 - FLAM_A SINE Alu -7 126 1 1087 203 34 58 chr6 131266962 131267049 -58012505 + MER2 DNA MER2_type 266 345 0 27 29 0 0 chr6 131267991 131268025 -58011529 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr6 131268250 131268279 -58011275 + AT_rich Low_complexity Low_complexity 1 29 0 9677 34 0 0 chr6 131268279 131270215 -58009339 - L1PA4 LINE L1 0 6155 4220 1486 203 78 4 chr6 131270492 131270773 -58008781 - AluJb SINE Alu -10 302 1 311 302 23 0 chr6 131271411 131271497 -58008057 - HAL1b LINE L1 -625 723 636 205 341 46 46 chr6 131275557 131275730 -58003824 - L2 LINE L2 -181 3091 2919 1677 171 8 0 chr6 131275735 131275993 -58003561 + AluJo SINE Alu 2 261 -51 225 108 0 0 chr6 131276002 131276039 -58003515 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 403 266 50 8 chr6 131276179 131276326 -58003228 + Charlie8 DNA MER1_type 4 173 -2244 21 0 0 0 chr6 131276770 131276791 -58002763 + AT_rich Low_complexity Low_complexity 1 21 0 205 336 60 35 chr6 131277029 131277145 -58002409 + MIR3 SINE MIR 53 171 -37 217 225 0 50 chr6 131277481 131277561 -58001993 + CT-rich Low_complexity Low_complexity 3 78 0 1761 152 54 0 chr6 131277945 131278221 -58001333 + AluSx SINE Alu 1 291 -21 280 281 110 12 chr6 131278227 131278309 -58001245 - MIR SINE MIR -138 124 35 485 287 75 46 chr6 131278551 131278808 -58000746 - L1ME4a LINE L1 -237 5884 5613 2365 94 0 0 chr6 131278808 131279107 -58000447 - AluSq SINE Alu -14 299 1 485 287 75 46 chr6 131279107 131279197 -58000357 - L1ME4a LINE L1 -508 5613 5527 1092 172 159 52 chr6 131279444 131279586 -57999968 - MER7A DNA MER2_type -2718 320 195 2099 135 3 3 chr6 131279586 131279882 -57999672 - AluSx SINE Alu -16 296 1 1092 172 159 52 chr6 131279882 131280029 -57999525 - MER7A DNA MER2_type -2843 195 2 1653 170 50 7 chr6 131280139 131280421 -57999133 - AluJb SINE Alu -18 294 1 21 36 0 0 chr6 131280455 131280483 -57999071 + AT_rich Low_complexity Low_complexity 1 28 0 2179 102 3 0 chr6 131281952 131282235 -57997319 + AluSp SINE Alu 1 284 -29 2324 78 0 3 chr6 131282426 131282720 -57996834 + AluY SINE Alu 1 293 -18 21 0 0 0 chr6 131282817 131282838 -57996716 + AT_rich Low_complexity Low_complexity 1 21 0 805 237 11 0 chr6 131282996 131283182 -57996372 + MER58A DNA MER1_type 1 188 -36 3049 176 45 11 chr6 131283329 131283995 -57995559 - L1MB5 LINE L1 -36 6636 5948 1404 208 29 41 chr6 131284007 131284328 -57995226 - L1MB5 LINE L1 -1518 5126 4810 2014 148 0 10 chr6 131284328 131284631 -57994923 - AluSx SINE Alu -12 300 1 1404 208 29 41 chr6 131284631 131284752 -57994802 - L1MB5 LINE L1 -1834 4810 4689 377 227 0 0 chr6 131284752 131284827 -57994727 + FAM SINE Alu 1 75 -100 962 142 0 7 chr6 131284827 131284968 -57994586 - AluSg/x SINE Alu -98 214 75 536 206 0 21 chr6 131284972 131285069 -57994485 + FAM SINE Alu 64 158 -27 2344 228 105 42 chr6 131285080 131285301 -57994253 - L1MB5 LINE L1 -1937 4707 4501 2206 116 13 0 chr6 131285301 131285603 -57993951 - AluSc SINE Alu -3 306 1 2344 228 105 42 chr6 131285603 131285947 -57993607 - L1MB5 LINE L1 -2143 4501 4180 956 132 44 0 chr6 131285947 131286106 -57993448 - L1MA1 LINE L1 -7 6295 6130 2344 228 105 42 chr6 131286106 131286418 -57993136 - L1MB5 LINE L1 -2464 4180 3889 189 0 0 0 chr6 131286418 131286439 -57993115 + (TA)n Simple_repeat Simple_repeat 1 21 0 2126 120 3 0 chr6 131286439 131286738 -57992816 - AluSx SINE Alu -12 300 1 2344 228 105 42 chr6 131286738 131287083 -57992471 - L1MB5 LINE L1 -2755 3889 3378 243 0 0 0 chr6 131287083 131287110 -57992444 + (TG)n Simple_repeat Simple_repeat 2 28 0 2344 228 105 42 chr6 131287110 131287247 -57992307 - L1MB5 LINE L1 -3266 3378 3251 1164 162 5 46 chr6 131287249 131287465 -57992089 - AluSx SINE Alu -105 207 1 1907 157 10 0 chr6 131287492 131287785 -57991769 - AluSx SINE Alu -16 296 1 691 186 23 122 chr6 131287789 131287926 -57991628 - L1MB5 LINE L1 -3707 2937 2788 338 48 0 0 chr6 131287926 131287968 -57991586 + U2 snRNA snRNA 1 42 -146 691 186 23 122 chr6 131287968 131288182 -57991372 - L1MB5 LINE L1 -3856 2788 2595 818 163 0 0 chr6 131288186 131288309 -57991245 - FLAM_C SINE Alu -20 123 1 22 0 0 0 chr6 131288335 131288357 -57991197 + AT_rich Low_complexity Low_complexity 1 22 0 4639 243 50 28 chr6 131288363 131290703 -57988851 - L1MB5 LINE L1 -4143 2503 11 2174 109 3 0 chr6 131291180 131291482 -57988072 + AluSg SINE Alu 1 303 -7 233 326 67 11 chr6 131292103 131292192 -57987362 - MIR3 SINE MIR -29 179 86 1745 231 0 16 chr6 131292518 131292894 -57986660 - Charlie1a DNA MER1_type -1085 370 1 316 310 57 101 chr6 131292895 131293017 -57986537 + L2 LINE L2 2958 3084 -229 2072 210 108 32 chr6 131293017 131293699 -57985855 - MER50 LTR ERV1 0 734 1 316 310 57 101 chr6 131293699 131293800 -57985754 + L2 LINE L2 3084 3188 -125 2407 88 0 0 chr6 131293800 131294107 -57985447 - AluSx SINE Alu -5 307 1 316 310 57 101 chr6 131294107 131294250 -57985304 + L2 LINE L2 3188 3309 -4 2109 108 3 52 chr6 131294304 131294628 -57984926 - AluSx SINE Alu -4 308 1 890 270 91 99 chr6 131294631 131295110 -57984444 - HAL1 LINE L1 -1407 1100 631 1726 158 7 17 chr6 131295110 131295407 -57984147 + AluJb SINE Alu 1 294 -18 890 270 91 99 chr6 131295407 131295873 -57983681 - HAL1 LINE L1 -1876 631 163 1553 154 118 4 chr6 131296114 131296393 -57983161 + AluJb SINE Alu 1 311 -1 1024 83 8 0 chr6 131296865 131296997 -57982557 - AluSp SINE Alu -180 133 1 263 167 83 17 chr6 131297102 131297162 -57982392 - MIR SINE MIR 0 262 199 25 99 0 0 chr6 131297529 131297610 -57981944 + AT_rich Low_complexity Low_complexity 1 81 0 272 333 114 9 chr6 131298089 131298194 -57981360 - L2 LINE L2 -8 3264 3149 1915 251 206 27 chr6 131298702 131299742 -57979812 + L1MC4 LINE L1 6470 7588 -220 1369 178 45 63 chr6 131300153 131300319 -57979235 - AluJo SINE Alu -30 282 122 180 0 0 0 chr6 131300319 131300339 -57979215 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1369 178 45 63 chr6 131300339 131300458 -57979096 - AluJo SINE Alu -190 122 2 198 0 0 0 chr6 131301606 131301628 -57977926 + (TG)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr6 131301905 131301926 -57977628 + AT_rich Low_complexity Low_complexity 1 21 0 357 272 59 44 chr6 131302699 131302835 -57976719 + MIR SINE MIR 19 156 -106 1367 184 69 48 chr6 131302847 131303179 -57976375 - MER2 DNA MER2_type -1 344 6 191 176 29 0 chr6 131303994 131304028 -57975526 - L2 LINE L2 -24 3289 3255 790 224 67 0 chr6 131304238 131304403 -57975151 - MIR SINE MIR -79 183 8 417 20 0 0 chr6 131304703 131304753 -57974801 + (TG)n Simple_repeat Simple_repeat 2 51 0 2006 156 0 0 chr6 131305629 131305931 -57973623 - AluSx SINE Alu -10 302 1 317 271 142 49 chr6 131305975 131306300 -57973254 - L1M4 LINE L1 -350 5771 5417 272 202 127 14 chr6 131307314 131307414 -57972140 - MIR3 SINE MIR -27 181 70 432 0 0 0 chr6 131307619 131307667 -57971887 + (TA)n Simple_repeat Simple_repeat 1 48 0 218 267 13 0 chr6 131308041 131308116 -57971438 + T-rich Low_complexity Low_complexity 1 76 0 24 32 0 0 chr6 131309126 131309157 -57970397 + AT_rich Low_complexity Low_complexity 1 31 0 207 0 0 0 chr6 131310115 131310138 -57969416 + (GCTTG)n Simple_repeat Simple_repeat 2 24 0 255 133 0 0 chr6 131310261 131310306 -57969248 + (A)n Simple_repeat Simple_repeat 1 45 0 31 0 0 0 chr6 131311151 131311182 -57968372 + AT_rich Low_complexity Low_complexity 1 31 0 867 233 135 21 chr6 131311284 131311662 -57967892 + L1MEc LINE L1 2103 2523 -3873 1275 172 175 0 chr6 131311667 131311958 -57967596 + L1MB8 LINE L1 5712 6053 -125 288 184 0 0 chr6 131312003 131312052 -57967502 - Charlie5 DNA MER1_type -2525 87 39 1166 234 179 4 chr6 131312146 131312604 -57966950 - L1MEc LINE L1 -5022 1374 837 1707 266 130 16 chr6 131312662 131313271 -57966283 - L1MEc LINE L1 -5682 714 37 295 265 168 16 chr6 131313392 131313577 -57965977 - L1M4 LINE L1 -2969 3177 2965 17777 29 5 0 chr6 131313629 131316552 -57963002 + L1PA3 LINE L1 3223 6155 0 226 260 209 29 chr6 131316620 131316897 -57962657 - L1M4 LINE L1 -3382 2764 2438 5424 134 42 21 chr6 131318893 131319047 -57960507 - L1MA7 LINE L1 0 6291 6142 1974 138 0 20 chr6 131319047 131319352 -57960202 - AluSx SINE Alu -13 299 1 5424 134 42 21 chr6 131319352 131320298 -57959256 - L1MA7 LINE L1 -149 6142 5169 1139 248 58 83 chr6 131320321 131320944 -57958610 - LTR19C LTR ERV1 0 779 1 4846 162 42 8 chr6 131320947 131321885 -57957669 - L1MA7 LINE L1 -998 5148 4180 1053 228 31 66 chr6 131321876 131322308 -57957246 - L1MC5 LINE L1 -908 6900 6611 * 2171 110 3 0 chr6 131322315 131322606 -57956948 - AluSp SINE Alu -20 293 2 2291 91 0 7 chr6 131322607 131322916 -57956638 - AluSq SINE Alu -6 307 1 2846 191 31 15 chr6 131323032 131323577 -57955977 - MLT2B3 LTR ERVL 0 554 1 776 268 29 0 chr6 131323978 131324187 -57955367 - L1MC5 LINE L1 -1898 5910 5696 407 330 0 0 chr6 131324217 131324335 -57955219 - L1MC5 LINE L1 -2208 5600 5483 311 213 55 56 chr6 131324393 131324517 -57955037 - L1MB8 LINE L1 -20 6151 6024 1658 196 12 12 chr6 131324782 131325113 -57954441 + MLT2C1 LTR ERVL 1 331 -66 431 63 16 0 chr6 131325116 131325179 -57954375 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 216 205 0 0 chr6 131325181 131325220 -57954334 + (CATATA)n Simple_repeat Simple_repeat 5 43 0 241 316 29 36 chr6 131325640 131325779 -57953775 - L1MEd LINE L1 -5979 140 3 527 311 89 8 chr6 131325841 131326089 -57953465 + Charlie2b DNA MER1_type 31 298 -2484 253 293 0 0 chr6 131326096 131326178 -57953376 + Charlie2b DNA MER1_type 556 637 -2145 1480 202 31 20 chr6 131326180 131326536 -57953018 + L1MA4 LINE L1 5941 6300 0 313 222 25 49 chr6 131326701 131326782 -57952772 + Tigger3(Golem) DNA MER2_type 2 80 -2949 679 200 0 0 chr6 131326913 131327023 -57952531 + Tigger3(Golem) DNA MER2_type 2929 3038 0 618 171 29 43 chr6 131327025 131327165 -57952389 + Charlie2a DNA MER1_type 1527 1664 -1198 416 220 64 28 chr6 131327169 131327310 -57952244 + Charlie2a DNA MER1_type 2716 2861 -1 1143 260 122 7 chr6 131327557 131327992 -57951562 + L1ME3A LINE L1 5682 6166 -4 438 94 0 0 chr6 131328256 131328320 -57951234 + (TA)n Simple_repeat Simple_repeat 2 65 0 336 316 22 69 chr6 131328566 131328841 -57950713 + L2 LINE L2 2314 2575 -739 1866 256 129 21 chr6 131328878 131329496 -57950058 - L2 LINE L2 -640 2674 1990 181 299 66 118 chr6 131329787 131329998 -57949556 + L3 LINE CR1 1288 1487 -90 13777 119 27 16 chr6 131330182 131332342 -57947212 + Tigger1 DNA MER2_type 2 2186 -232 670 169 76 0 chr6 131332341 131332459 -57947095 + Tigger1 DNA MER2_type 2292 2418 0 * 822 263 43 33 chr6 131332540 131332841 -57946713 + Charlie7 DNA MER1_type 1918 2221 -391 1536 171 7 37 chr6 131333016 131333315 -57946239 + AluJb SINE Alu 9 298 -14 981 276 244 7 chr6 131333321 131333871 -57945683 - L2 LINE L2 -1322 1992 1313 466 308 113 25 chr6 131333885 131334681 -57944873 - L1M4 LINE L1 -755 5391 4526 2330 55 16 22 chr6 131334840 131335151 -57944403 - AluY SINE Alu -2 309 1 624 284 176 15 chr6 131335199 131335712 -57943842 + L2 LINE L2 2712 3311 -2 366 129 0 0 chr6 131337153 131337215 -57942339 + (TA)n Simple_repeat Simple_repeat 1 62 0 322 196 87 43 chr6 131337215 131337240 -57942314 + L1MC4 LINE L1 6611 6703 -1339 249 232 0 0 chr6 131337242 131337311 -57942243 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 27 0 0 0 chr6 131339312 131339339 -57940215 + AT_rich Low_complexity Low_complexity 1 27 0 249 245 239 65 chr6 131341345 131341529 -57938025 - L3 LINE CR1 -104 1473 1258 1434 216 7 0 chr6 131341692 131341984 -57937570 - AluJo SINE Alu -13 299 6 258 336 119 21 chr6 131342474 131342617 -57936937 + MIR SINE MIR 20 176 -86 188 261 80 34 chr6 131342698 131342786 -57936768 - L2 LINE L2 -186 3127 3036 243 333 0 0 chr6 131342928 131343000 -57936554 + L2 LINE L2 3242 3313 0 221 340 0 58 chr6 131343072 131343175 -57936379 + L2 LINE L2 3176 3272 0 23 54 0 0 chr6 131343624 131343661 -57935893 + AT_rich Low_complexity Low_complexity 1 37 0 2248 84 7 13 chr6 131343706 131344015 -57935539 - AluSq SINE Alu -6 307 1 426 277 36 9 chr6 131344020 131344132 -57935422 - L2 LINE L2 0 3313 3199 188 35 35 0 chr6 131344783 131344812 -57934742 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 671 293 114 32 chr6 131345012 131345290 -57934264 + L2 LINE L2 2702 2956 -357 2148 120 0 3 chr6 131345290 131345589 -57933965 - AluSc SINE Alu -11 298 1 671 293 114 32 chr6 131345589 131345880 -57933674 + L2 LINE L2 2956 3313 0 1861 160 0 0 chr6 131346330 131346665 -57932889 + AluJb SINE Alu 1 335 0 2370 84 0 40 chr6 131347452 131347775 -57931779 - AluSp SINE Alu -3 310 1 345 275 144 10 chr6 131349720 131349959 -57929595 - L1ME3 LINE L1 -287 5875 5605 50 51 0 0 chr6 131350272 131350350 -57929204 + AT_rich Low_complexity Low_complexity 1 78 0 15429 34 4 0 chr6 131350351 131352927 -57926627 - L1PA4 LINE L1 -1 6154 3519 1360 94 10 10 chr6 131352934 131353137 -57926417 - L1PB2 LINE L1 -4 6147 5945 198 0 0 0 chr6 131353137 131353159 -57926395 + (TA)n Simple_repeat Simple_repeat 2 23 0 3451 85 12 2 chr6 131353160 131353656 -57925898 - L1PB2 LINE L1 -372 5779 5279 2264 76 0 27 chr6 131354117 131354418 -57925136 - AluY SINE Alu -17 294 2 1388 97 77 0 chr6 131354472 131354668 -57924886 - AluSg/x SINE Alu -18 294 84 1946 103 0 39 chr6 131354843 131355153 -57924401 - AluSq SINE Alu -15 298 1 219 36 0 0 chr6 131356347 131356375 -57923179 + (TG)n Simple_repeat Simple_repeat 1 28 0 1477 182 72 10 chr6 131356537 131356828 -57922726 - AluSx SINE Alu -1 311 3 21 0 0 0 chr6 131357038 131357059 -57922495 + AT_rich Low_complexity Low_complexity 1 21 0 2228 90 0 17 chr6 131357356 131357657 -57921897 - AluSx SINE Alu -16 296 1 341 297 76 65 chr6 131357745 131358035 -57921519 - L1MC4a LINE L1 -1910 5898 5606 298 0 23 23 chr6 131358042 131358085 -57921469 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1409 186 35 8 chr6 131358087 131358345 -57921209 - AluJo SINE Alu -33 279 15 335 321 130 8 chr6 131358776 131358907 -57920647 + MIR SINE MIR 37 183 -79 264 167 26 26 chr6 131359747 131359825 -57919729 + (TATATG)n Simple_repeat Simple_repeat 5 82 0 1690 167 14 4 chr6 131360140 131360454 -57919100 - AluJb SINE Alu 0 317 1 247 317 50 20 chr6 131360720 131360821 -57918733 - MIR3 SINE MIR -1 207 104 248 320 16 16 chr6 131360835 131360963 -57918591 - MLT1L LTR MaLR -6 609 482 21 57 0 0 chr6 131361515 131361550 -57918004 + AT_rich Low_complexity Low_complexity 1 35 0 2263 153 55 35 chr6 131361821 131362311 -57917243 + L1MA7 LINE L1 5791 6290 -1 515 237 25 0 chr6 131362741 131362859 -57916695 - MLT1J LTR MaLR -105 406 286 22 56 0 0 chr6 131363623 131363659 -57915895 + AT_rich Low_complexity Low_complexity 1 36 0 2347 114 0 0 chr6 131363766 131364074 -57915480 + AluSq SINE Alu 1 308 -5 307 267 26 86 chr6 131364890 131365006 -57914548 + L2 LINE L2 3189 3297 -16 509 317 139 43 chr6 131365461 131366013 -57913541 - L2 LINE L2 -676 2638 2034 216 297 198 15 chr6 131366399 131366601 -57912953 + L2 LINE L2 2227 2465 -849 258 370 47 98 chr6 131366911 131367298 -57912256 + L2 LINE L2 2897 3263 -9 288 292 0 0 chr6 131368954 131369026 -57910528 + GA-rich Low_complexity Low_complexity 2 73 0 410 324 50 37 chr6 131369120 131369361 -57910193 + MIR SINE MIR 18 261 -1 33 90 0 0 chr6 131371817 131371906 -57907648 + AT_rich Low_complexity Low_complexity 1 89 0 3564 19 0 0 chr6 131372424 131372837 -57906717 - L1PA3 LINE L1 0 6155 5743 3838 271 139 17 chr6 131373532 131374149 -57905405 - L2 LINE L2 0 3313 2773 2071 131 3 3 chr6 131374149 131374447 -57905107 + AluSg SINE Alu 6 303 -7 3838 271 139 17 chr6 131374447 131375716 -57903838 - L2 LINE L2 -540 2773 1199 180 0 0 0 chr6 131375718 131375738 -57903816 + (TCCCC)n Simple_repeat Simple_repeat 2 21 0 718 192 6 12 chr6 131375742 131375909 -57903645 + CT-rich Low_complexity Low_complexity 1 166 0 189 107 0 0 chr6 131375922 131375950 -57903604 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 342 262 48 56 chr6 131375954 131376080 -57903474 - L2 LINE L2 -2126 1188 1064 227 296 28 28 chr6 131376512 131376583 -57902971 + MIR SINE MIR 47 117 -91 306 334 165 28 chr6 131378502 131378939 -57900615 + L2 LINE L2 2260 2756 -558 408 319 0 0 chr6 131378988 131379082 -57900472 + MER5A DNA MER1_type 10 103 -86 298 321 75 15 chr6 131379463 131379597 -57899957 + L2 LINE L2 3168 3309 -4 639 249 138 0 chr6 131383191 131383380 -57896174 - MER58C DNA MER1_type 0 215 1 204 200 0 0 chr6 131383507 131383552 -57896002 + T-rich Low_complexity Low_complexity 1 45 0 467 317 70 40 chr6 131384449 131384648 -57894906 + L2 LINE L2 2728 2932 -382 229 348 11 11 chr6 131385744 131385833 -57893721 + L2 LINE L2 3224 3312 -1 203 344 195 8 chr6 131385949 131386077 -57893477 + L2 LINE L2 2826 2977 -337 23 0 0 0 chr6 131386095 131386118 -57893436 + AT_rich Low_complexity Low_complexity 1 23 0 53 49 0 0 chr6 131386263 131386344 -57893210 + AT_rich Low_complexity Low_complexity 1 81 0 8082 205 25 42 chr6 131386353 131388183 -57891371 + L1MA4A LINE L1 1092 2952 -3896 10515 63 7 2 chr6 131388183 131390309 -57889245 + L1PA6 LINE L1 4024 6154 0 8082 205 25 42 chr6 131390309 131390744 -57888810 + L1MA4A LINE L1 2952 3308 -3540 2046 146 0 0 chr6 131390744 131391031 -57888523 + AluSx SINE Alu 3 289 -23 8082 205 25 42 chr6 131391031 131391374 -57888180 + L1MA4A LINE L1 3308 3655 -3193 1517 156 8 4 chr6 131391378 131391622 -57887932 - MSTA LTR MaLR 0 428 184 2298 143 21 5 chr6 131391624 131391996 -57887558 - MSTA-int LTR MaLR 0 1651 1274 42483 35 22 4 chr6 131392065 131393794 -57885760 + L1PA2 LINE L1 1 1696 -4459 2845 10 0 0 chr6 131393794 131394105 -57885449 + AluYa5 SINE Alu 1 311 0 42483 35 22 4 chr6 131394105 131398414 -57881140 + L1PA2 LINE L1 1696 6154 -1 207 100 0 0 chr6 131398433 131398463 -57881091 + (A)n Simple_repeat Simple_repeat 1 30 0 3840 161 40 11 chr6 131398463 131398629 -57880925 - MSTA-int LTR MaLR -928 723 563 194 0 39 0 chr6 131398629 131398655 -57880899 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3840 161 40 11 chr6 131398655 131399191 -57880363 - MSTA-int LTR MaLR -1088 563 1 2628 146 26 0 chr6 131399191 131399608 -57879946 - MSTA LTR MaLR 0 428 1 11484 166 30 10 chr6 131399608 131402892 -57876662 + L1MA4A LINE L1 3655 7002 -3 258 241 83 56 chr6 131402969 131403077 -57876477 + L2 LINE L2 3196 3306 -7 289 293 57 121 chr6 131403583 131403723 -57875831 - MIR3 SINE MIR -37 171 41 434 100 0 0 chr6 131405518 131405578 -57873976 - Alu SINE Alu -15 295 236 24 0 0 0 chr6 131406213 131406237 -57873317 + AT_rich Low_complexity Low_complexity 1 24 0 468 273 93 13 chr6 131406338 131406488 -57873066 + MIR SINE MIR 20 181 -81 2238 119 3 3 chr6 131406612 131406924 -57872630 - AluSq SINE Alu -1 312 1 3187 88 31 2 chr6 131409960 131410413 -57869141 - L1PA10 LINE L1 -5 6163 5698 504 106 0 0 chr6 131410478 131410563 -57868991 + (TA)n Simple_repeat Simple_repeat 2 86 0 2222 140 88 25 chr6 131410565 131410973 -57868581 + Tigger2a DNA MER2_type 1 434 0 474 283 82 22 chr6 131411804 131411988 -57867566 + L2 LINE L2 3118 3312 -1 2856 279 114 23 chr6 131413338 131413612 -57865942 - L2 LINE L2 -1 3312 3064 6665 38 48 0 chr6 131413612 131414446 -57865108 + L1PA5 LINE L1 5273 6146 -8 2856 279 114 23 chr6 131414446 131415525 -57864029 - L2 LINE L2 -249 3064 1860 1605 172 97 9 chr6 131416010 131416329 -57863225 + MER7A DNA MER2_type 2 346 0 1421 178 43 35 chr6 131416375 131416518 -57863036 - L1MDa LINE L1 -4364 2176 2036 2067 214 32 36 chr6 131416518 131417078 -57862476 + MER74A LTR ERVL 1 558 0 1421 178 43 35 chr6 131417078 131417282 -57862272 - L1MDa LINE L1 -4504 2036 1826 2096 247 76 51 chr6 131419130 131419372 -57860182 + L1ME3A LINE L1 5237 5472 -698 2293 113 0 0 chr6 131419372 131419681 -57859873 + AluSx SINE Alu 1 309 -3 2096 247 76 51 chr6 131419681 131420348 -57859206 + L1ME3A LINE L1 5472 6169 -1 433 250 114 54 chr6 131420364 131420732 -57858822 - L1M4 LINE L1 -3617 2529 2140 1997 269 82 14 chr6 131421007 131421915 -57857639 - L1ME3 LINE L1 -2 6143 5178 527 302 80 25 chr6 131422328 131422553 -57857001 + MIR SINE MIR 17 247 -15 26 64 0 0 chr6 131422817 131422864 -57856690 + AT_rich Low_complexity Low_complexity 1 47 0 623 293 57 70 chr6 131422993 131423365 -57856189 + L2 LINE L2 2947 3313 0 195 204 0 0 chr6 131423588 131423632 -57855922 + (CAT)n Simple_repeat Simple_repeat 3 46 0 2445 136 53 15 chr6 131423770 131424182 -57855372 + MSTA LTR MaLR 1 428 0 1109 233 77 0 chr6 131424192 131424531 -57855023 - L1ME3 LINE L1 -2160 3969 3605 1276 128 140 92 chr6 131424531 131424889 -57854665 + THE1C LTR MaLR 1 375 0 9560 139 10 41 chr6 131424891 131425245 -57854309 + THE1C-int LTR MaLR 3 366 -1214 1945 212 58 54 chr6 131425245 131425797 -57853757 + MLT2B3 LTR ERVL 1 554 0 9560 139 10 41 chr6 131425797 131427070 -57852484 + THE1C-int LTR MaLR 366 1580 0 1006 148 138 7 chr6 131427070 131427294 -57852260 + MSTA LTR MaLR 1 238 -137 5074 156 8 16 chr6 131427295 131428188 -57851366 + L1PA11 LINE L1 2089 2974 -3172 11552 145 14 1 chr6 131428188 131428577 -57850977 + L1PA11 LINE L1 3365 3747 -2427 1923 147 14 7 chr6 131428577 131428862 -57850692 + AluSx SINE Alu 5 291 -21 11552 145 14 1 chr6 131428862 131431266 -57848288 + L1PA11 LINE L1 3747 6162 -12 2225 85 3 16 chr6 131431271 131431577 -57847977 + AluY SINE Alu 7 308 -3 878 146 158 6 chr6 131431577 131431742 -57847812 + MSTA LTR MaLR 239 428 0 2855 255 72 35 chr6 131431761 131432264 -57847290 - L1ME3 LINE L1 -2542 3587 3104 6993 56 2 36 chr6 131432264 131433451 -57846103 - L1PA7 LINE L1 0 6154 4979 2855 255 72 35 chr6 131433451 131434218 -57845336 - L1ME3 LINE L1 -3025 3104 2271 395 298 51 8 chr6 131434220 131434388 -57845166 - L1ME3 LINE L1 -4862 1257 1085 1910 212 32 70 chr6 131434388 131434920 -57844634 + MLT2B1 LTR ERVL 1 512 -8 576 294 82 72 chr6 131434931 131435418 -57844136 - L1ME3 LINE L1 -5034 1085 594 527 318 55 14 chr6 131436539 131436756 -57842798 - MIR SINE MIR -35 227 2 1055 248 100 6 chr6 131436958 131437297 -57842257 - LTR33A LTR ERVL -8 515 145 757 201 134 18 chr6 131437598 131437822 -57841732 + MER20B DNA MER1_type 59 308 -475 1023 90 0 8 chr6 131437833 131437966 -57841588 - AluY SINE Alu -179 132 1 602 205 24 15 chr6 131437967 131437993 -57841561 + MER20B DNA MER1_type 305 329 -454 2363 154 67 2 chr6 131437993 131438395 -57841159 + MSTA LTR MaLR 1 428 0 602 205 24 15 chr6 131438395 131438518 -57841036 + MER20B DNA MER1_type 329 450 -333 696 166 171 29 chr6 131438561 131438766 -57840788 + MER20B DNA MER1_type 550 783 0 596 340 41 8 chr6 131438833 131439077 -57840477 + MIR SINE MIR 11 262 0 2712 99 8 0 chr6 131440843 131441215 -57838339 + THE1C LTR MaLR 1 375 0 272 49 49 0 chr6 131441339 131441380 -57838174 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 216 0 0 0 chr6 131441409 131441433 -57838121 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1884 126 3 11 chr6 131441452 131441873 -57837681 - AluSx SINE Alu 0 419 1 189 270 81 40 chr6 131442802 131442876 -57836678 + MER5A DNA MER1_type 113 189 0 545 272 134 76 chr6 131444571 131444795 -57834759 - MLT1H LTR MaLR 0 549 319 366 351 86 25 chr6 131445383 131445628 -57833926 + L2 LINE L2 2898 3157 -115 209 302 0 0 chr6 131445733 131445786 -57833768 - L2 LINE L2 0 3313 3261 401 41 0 0 chr6 131446405 131446454 -57833100 + L1PA6 LINE L1 6099 6147 -7 2000 131 3 3 chr6 131447596 131447886 -57831668 + AluSx SINE Alu 1 290 -22 1650 187 23 20 chr6 131447915 131448268 -57831286 - L1MB7 LINE L1 -15 6169 5816 428 136 0 15 chr6 131448274 131448340 -57831214 - AluSx SINE Alu -18 292 228 898 166 0 7 chr6 131448340 131448485 -57831069 - AluSx SINE Alu -126 186 43 2695 176 92 5 chr6 131448491 131449372 -57830182 - L1MB7 LINE L1 -366 5818 4851 248 310 11 0 chr6 131449713 131449800 -57829754 - MIR SINE MIR -14 248 161 556 230 104 89 chr6 131449813 131450139 -57829415 - LTR16A1 LTR ERVL -23 434 104 307 206 108 20 chr6 131450256 131450358 -57829196 - MIR SINE MIR -81 181 71 541 261 0 7 chr6 131450812 131450965 -57828589 - L1MB7 LINE L1 -2554 3592 3441 282 29 0 0 chr6 131451129 131451164 -57828390 + (CA)n Simple_repeat Simple_repeat 2 36 0 192 40 0 0 chr6 131452729 131452754 -57826800 + (CCCCG)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr6 131454045 131454066 -57825488 + AT_rich Low_complexity Low_complexity 1 21 0 38 0 0 0 chr6 131454357 131454395 -57825159 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr6 131454870 131454894 -57824660 + AT_rich Low_complexity Low_complexity 1 24 0 524 295 16 42 chr6 131457046 131457236 -57822318 + MIR3 SINE MIR 18 202 -6 191 310 56 61 chr6 131458754 131458951 -57820603 + L2 LINE L2 1917 2112 -1202 1593 162 25 16 chr6 131458956 131459277 -57820277 - MER33 DNA MER1_type 0 324 1 239 299 43 43 chr6 131459398 131459562 -57819992 + L2 LINE L2 2686 2849 -465 202 305 127 51 chr6 131459827 131459945 -57819609 + L2 LINE L2 3179 3305 -8 408 283 78 58 chr6 131460655 131460846 -57818708 + MIR SINE MIR 2 196 -66 480 306 71 33 chr6 131460978 131461161 -57818393 - MIR SINE MIR -61 201 12 21 0 0 0 chr6 131461507 131461528 -57818026 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr6 131461703 131461744 -57817810 + AT_rich Low_complexity Low_complexity 1 41 0 2324 96 0 10 chr6 131462324 131462636 -57816918 + AluSc SINE Alu 1 309 0 253 323 128 60 chr6 131464894 131465160 -57814394 - L2 LINE L2 -64 3208 2925 247 285 234 0 chr6 131465753 131465890 -57813664 + MIR SINE MIR 91 259 -3 247 302 175 16 chr6 131465936 131466062 -57813492 + L2 LINE L2 3110 3255 -17 278 281 73 0 chr6 131466729 131466811 -57812743 + L2 LINE L2 3182 3269 -3 1852 288 101 8 chr6 131467775 131468408 -57811146 + MER115 DNA AcHobo 1 692 -1 288 0 0 0 chr6 131471187 131471219 -57808335 + (CA)n Simple_repeat Simple_repeat 2 33 0 23 92 0 0 chr6 131472005 131472070 -57807484 + AT_rich Low_complexity Low_complexity 1 65 0 1055 157 0 22 chr6 131472083 131472261 -57807293 + AluJb SINE Alu 121 294 -18 187 286 109 67 chr6 131472290 131472409 -57807145 - MIR SINE MIR -32 230 107 235 308 128 79 chr6 131472493 131472759 -57806795 - L2 LINE L2 -56 3216 2938 822 170 27 64 chr6 131472759 131472947 -57806607 - MER20B DNA MER1_type 0 219 39 368 336 213 16 chr6 131472955 131473270 -57806284 - L2 LINE L2 -367 2947 2571 490 321 146 22 chr6 131473273 131473780 -57805774 - L2 LINE L2 -885 2429 1860 1233 128 0 0 chr6 131473871 131474043 -57805511 - AluJb SINE Alu -12 300 129 258 324 146 18 chr6 131474048 131474378 -57805176 - L2 LINE L2 -1607 1707 1336 763 184 12 25 chr6 131474395 131474558 -57804996 + MER105 DNA DNA 2 162 -42 237 271 84 51 chr6 131474735 131474949 -57804605 + L1ME LINE L1 4487 4707 -1439 21 36 0 0 chr6 131475236 131475264 -57804290 + AT_rich Low_complexity Low_complexity 1 28 0 388 306 143 10 chr6 131475367 131475576 -57803978 + L1ME LINE L1 5155 5391 -755 234 331 123 8 chr6 131475651 131475781 -57803773 + L1ME LINE L1 5495 5639 -482 2075 122 3 0 chr6 131475801 131476096 -57803458 - AluSx SINE Alu -16 296 1 28 0 0 0 chr6 131476126 131476154 -57803400 + AT_rich Low_complexity Low_complexity 1 28 0 213 39 0 0 chr6 131476161 131476187 -57803367 + (TAAAAA)n Simple_repeat Simple_repeat 4 29 0 342 320 103 13 chr6 131476197 131476353 -57803201 + L1ME LINE L1 5649 5818 -303 236 191 114 99 chr6 131476433 131476456 -57803098 + L1ME3A LINE L1 5213 5234 -912 2324 147 6 0 chr6 131476456 131476816 -57802738 + MER47A DNA MER2_type 1 362 -4 236 191 114 99 chr6 131476816 131476844 -57802710 + L1ME3A LINE L1 5234 5260 -886 627 180 298 0 chr6 131476844 131477005 -57802549 - MER3 DNA MER1_type 0 209 1 236 191 114 99 chr6 131477005 131477083 -57802471 + L1ME3A LINE L1 5260 5345 -801 564 309 98 30 chr6 131477177 131477662 -57801892 + L1ME3A LINE L1 5380 5922 -247 250 175 32 16 chr6 131477890 131477953 -57801601 + A-rich Low_complexity Low_complexity 2 65 0 317 286 103 59 chr6 131478196 131478486 -57801068 - L3 LINE CR1 -144 1433 1131 635 273 154 11 chr6 131479264 131479903 -57799651 - L1ME3 LINE L1 -274 5890 5153 7112 193 27 37 chr6 131480041 131481094 -57798460 - L1MB3 LINE L1 -3 6180 5117 2130 91 4 0 chr6 131481094 131481368 -57798186 - AluSc SINE Alu -11 298 24 7112 193 27 37 chr6 131481368 131482285 -57797269 - L1MB3 LINE L1 -1066 5117 4247 207 0 0 0 chr6 131482285 131482308 -57797246 + (TG)n Simple_repeat Simple_repeat 2 24 0 7112 193 27 37 chr6 131482308 131483041 -57796513 - L1MB3 LINE L1 -1936 4247 3508 1612 244 7 0 chr6 131483040 131483454 -57796100 - L1MB3 LINE L1 -3270 2876 2460 * 423 147 0 9 chr6 131483578 131483665 -57795889 - L1M4c LINE L1 -3948 2436 2373 * 1090 193 0 0 chr6 131483664 131483866 -57795688 - L1MA4 LINE L1 -267 6033 5832 749 293 141 43 chr6 131483856 131484208 -57795346 - L1ME3 LINE L1 -1817 4329 4013 * 396 40 0 0 chr6 131484208 131484258 -57795296 + (CA)n Simple_repeat Simple_repeat 1 50 0 749 293 141 43 chr6 131484258 131484701 -57794853 - L1ME3 LINE L1 -2133 4013 3456 42 92 0 0 chr6 131485145 131485264 -57794290 + AT_rich Low_complexity Low_complexity 1 119 0 834 48 0 0 chr6 131485277 131485380 -57794174 - AluY SINE Alu -1 310 208 2082 142 12 3 chr6 131487549 131487895 -57791659 + L1PA16 LINE L1 5817 6165 -1 1894 144 13 0 chr6 131488605 131488903 -57790651 - AluSx SINE Alu -10 302 1 3692 130 25 6 chr6 131489343 131489982 -57789572 - L1MA4 LINE L1 -8 6292 5642 807 290 0 69 chr6 131490325 131490587 -57788967 - MIR SINE MIR -3 259 16 474 319 89 21 chr6 131490865 131491100 -57788454 - MIR SINE MIR -10 252 2 63 0 0 0 chr6 131491211 131491274 -57788280 + AT_rich Low_complexity Low_complexity 1 63 0 363 313 56 50 chr6 131491294 131491492 -57788062 + L2 LINE L2 3114 3312 -1 367 54 0 0 chr6 131494458 131494514 -57785040 + L1MA2 LINE L1 6245 6300 -4 1249 186 57 21 chr6 131494898 131495178 -57784376 + L1MD3 LINE L1 7676 7965 -30 994 68 0 0 chr6 131495536 131495669 -57783885 - L1PA5 LINE L1 0 6154 6022 983 231 24 0 chr6 131496021 131496229 -57783325 - MER20 DNA MER1_type 0 219 7 38 51 0 0 chr6 131496238 131496297 -57783257 + AT_rich Low_complexity Low_complexity 1 59 0 1401 154 32 51 chr6 131497111 131497364 -57782190 + AluJo SINE Alu 35 282 -30 189 107 0 0 chr6 131497546 131497574 -57781980 + (T)n Simple_repeat Simple_repeat 1 28 0 29 28 0 0 chr6 131498370 131498406 -57781148 + AT_rich Low_complexity Low_complexity 1 36 0 212 303 113 35 chr6 131498965 131499107 -57780447 + MIR SINE MIR 109 261 -1 1619 139 111 4 chr6 131501576 131501856 -57777698 + AluSq SINE Alu 1 310 -3 195 245 143 10 chr6 131502033 131502131 -57777423 - MIR3 SINE MIR -13 195 85 1573 198 6 22 chr6 131503278 131503591 -57775963 - AluJo SINE Alu -4 308 1 972 343 68 12 chr6 131505894 131506631 -57772923 - L2 LINE L2 -7 3306 2522 451 282 63 22 chr6 131509242 131509444 -57770110 - MER20 DNA MER1_type 0 219 10 764 161 46 8 chr6 131509807 131509937 -57769617 - AluJo SINE Alu -177 135 1 646 118 32 166 chr6 131510044 131510231 -57769323 - AluJb SINE Alu -15 297 136 394 270 62 28 chr6 131510532 131510694 -57768860 + MER20B DNA MER1_type 31 201 -18 4829 79 24 0 chr6 131510807 131511467 -57768087 + L1PA10 LINE L1 5493 6168 0 401 0 20 0 chr6 131512025 131512074 -57767480 + (GA)n Simple_repeat Simple_repeat 2 51 0 224 135 0 39 chr6 131512086 131512138 -57767416 + (GGGGA)n Simple_repeat Simple_repeat 3 52 0 2596 38 0 13 chr6 131513217 131513530 -57766024 - AluY SINE Alu -2 309 1 1576 173 32 4 chr6 131513560 131513838 -57765716 + AluJo SINE Alu 1 286 -26 1788 157 20 13 chr6 131513848 131514153 -57765401 + AluSx SINE Alu 1 307 -5 238 229 29 57 chr6 131514292 131514362 -57765192 - L2 LINE L2 -69 3203 3136 24 0 0 0 chr6 131515625 131515649 -57763905 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 131516286 131516313 -57763241 + AT_rich Low_complexity Low_complexity 1 27 0 467 250 125 0 chr6 131516407 131516567 -57762987 + MIR SINE MIR 70 249 -13 21 36 0 0 chr6 131517131 131517159 -57762395 + AT_rich Low_complexity Low_complexity 1 28 0 183 139 0 0 chr6 131518789 131518825 -57760729 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 400 254 106 31 chr6 131518860 131519142 -57760412 + L1MB7 LINE L1 5637 5940 -230 254 326 11 0 chr6 131519913 131520005 -57759549 - L1MC/D LINE L1 -1992 5816 5724 412 347 75 52 chr6 131521543 131522198 -57757356 - L2 LINE L2 -1035 2279 1610 202 326 0 0 chr6 131523861 131523950 -57755604 + A-rich Low_complexity Low_complexity 1 89 0 204 150 0 25 chr6 131524261 131524301 -57755253 + (GAAA)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr6 131527006 131527027 -57752527 + AT_rich Low_complexity Low_complexity 1 21 0 690 214 0 0 chr6 131527028 131527145 -57752409 - FLAM_A SINE Alu -25 117 1 21 0 0 0 chr6 131527400 131527421 -57752133 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 131528239 131528260 -57751294 + AT_rich Low_complexity Low_complexity 1 21 0 690 214 0 0 chr6 131528261 131528378 -57751176 - FLAM_A SINE Alu -25 117 1 27 0 0 0 chr6 131528633 131528660 -57750894 + AT_rich Low_complexity Low_complexity 1 27 0 1890 109 0 109 chr6 131529041 131529370 -57750184 - AluSx SINE Alu -19 293 1 703 295 48 9 chr6 131529475 131529685 -57749869 - MIR SINE MIR 0 262 45 211 164 33 16 chr6 131529872 131529933 -57749621 + GA-rich Low_complexity Low_complexity 3 64 0 550 345 25 0 chr6 131530189 131530392 -57749162 - MIR SINE MIR -42 220 13 2243 104 20 6 chr6 131530788 131531133 -57748421 - L1MA2 LINE L1 -9 6295 5946 252 301 58 45 chr6 131531165 131531321 -57748233 + MLT1L LTR MaLR 234 391 -224 1203 269 24 6 chr6 131533518 131533972 -57745582 - L1ME3A LINE L1 -31 6131 5579 468 183 0 0 chr6 131535545 131535627 -57743927 + ORSL DNA AcHobo 1 82 -193 321 47 0 0 chr6 131537032 131537075 -57742479 + (T)n Simple_repeat Simple_repeat 1 43 0 253 362 53 91 chr6 131538096 131538240 -57741314 + L2 LINE L2 2974 3106 -166 1494 148 21 42 chr6 131538240 131538550 -57741004 - AluJo SINE Alu 0 312 9 253 362 53 91 chr6 131538550 131538669 -57740885 + L2 LINE L2 3106 3228 -44 1526 291 128 47 chr6 131538765 131539007 -57740547 + L2 LINE L2 1910 2131 -1182 2227 166 38 31 chr6 131539007 131539430 -57740124 + MSTB LTR MaLR 1 426 0 1526 291 128 47 chr6 131539430 131540421 -57739133 + L2 LINE L2 2131 3309 -4 187 380 116 16 chr6 131540433 131540554 -57739000 - L2 LINE L2 -2 3270 3138 2482 251 21 18 chr6 131540695 131541308 -57738246 - MLT1E2 LTR MaLR -11 615 1 252 223 29 0 chr6 131542231 131542334 -57737220 + (TA)n Simple_repeat Simple_repeat 1 106 0 2475 59 0 3 chr6 131542429 131542733 -57736821 - AluY SINE Alu -8 303 1 232 293 172 10 chr6 131543647 131543746 -57735808 + L2 LINE L2 3137 3251 -21 458 107 0 13 chr6 131543787 131543862 -57735692 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 329 297 54 27 chr6 131544041 131544152 -57735402 + L2 LINE L2 3200 3313 0 289 319 134 38 chr6 131544685 131544842 -57734712 + MIR SINE MIR 7 178 -84 336 117 39 0 chr6 131544918 131544995 -57734559 + (TTA)n Simple_repeat Simple_repeat 2 81 0 379 156 0 16 chr6 131545057 131545121 -57734433 - MER5A DNA MER1_type -123 66 4 183 217 22 22 chr6 131545171 131545217 -57734337 + MER5B DNA MER1_type 132 177 -1 461 209 107 25 chr6 131546835 131547031 -57732523 - L1MC5 LINE L1 -52 7909 7698 220 126 63 9 chr6 131547054 131547165 -57732389 + (TA)n Simple_repeat Simple_repeat 2 118 0 1755 217 79 46 chr6 131547182 131547893 -57731661 - L1MC5 LINE L1 -268 7693 6960 278 270 230 8 chr6 131548194 131548320 -57731234 - L2 LINE L2 -1 3312 3159 388 262 92 14 chr6 131548762 131548903 -57730651 + MER5B DNA MER1_type 21 172 -6 26 64 0 0 chr6 131549119 131549166 -57730388 + AT_rich Low_complexity Low_complexity 1 47 0 893 140 56 0 chr6 131549237 131549415 -57730139 - L1MA6 LINE L1 -1 6299 6112 21 0 0 0 chr6 131549544 131549565 -57729989 + AT_rich Low_complexity Low_complexity 1 21 0 366 193 45 0 chr6 131551257 131551345 -57728209 - L1MC1 LINE L1 -9 6324 6233 1776 169 29 71 chr6 131552715 131553093 -57726461 + MLT1A1 LTR MaLR 4 365 0 361 309 8 49 chr6 131553219 131553302 -57726252 + L2 LINE L2 3153 3231 -41 4927 145 176 18 chr6 131553302 131554365 -57725189 + Tigger3b DNA MER2_type 1 1231 0 361 309 8 49 chr6 131554365 131554404 -57725150 + L2 LINE L2 3231 3270 -2 2253 260 81 76 chr6 131554523 131555224 -57724330 + MER69B DNA AcHobo 1 697 -1829 748 154 8 0 chr6 131555224 131555341 -57724213 + FLAM_C SINE Alu 3 120 -13 1417 193 7 35 chr6 131555349 131555639 -57723915 - AluJb SINE Alu -30 282 1 2253 260 81 76 chr6 131555639 131556135 -57723419 + MER69B DNA AcHobo 703 1213 -13 311 0 26 0 chr6 131556643 131556682 -57722872 + (TAA)n Simple_repeat Simple_repeat 3 42 0 210 267 0 0 chr6 131556714 131556759 -57722795 + MIR SINE MIR 196 240 -22 1394 206 11 54 chr6 131557564 131557914 -57721640 + L1ME1 LINE L1 5410 5744 -422 643 63 0 0 chr6 131557914 131557993 -57721561 - AluSg SINE Alu -179 131 53 1077 120 0 0 chr6 131557994 131558174 -57721380 + AluSg/x SINE Alu 142 321 0 574 222 152 51 chr6 131558174 131558431 -57721123 + L1ME1 LINE L1 5732 6014 -152 626 245 0 0 chr6 131558444 131558587 -57720967 + L1MA10 LINE L1 6189 6331 -3 28 29 0 0 chr6 131558587 131558622 -57720932 + AT_rich Low_complexity Low_complexity 1 35 0 2614 237 46 50 chr6 131558999 131559893 -57719661 - L1MEc LINE L1 -3033 3182 2286 2316 136 76 5 chr6 131559893 131560313 -57719241 + L1PA15 LINE L1 5711 6160 -5 2614 237 46 50 chr6 131560313 131560989 -57718565 - L1MEc LINE L1 -3929 2286 1659 2031 135 75 26 chr6 131560989 131561336 -57718218 + THE1B LTR MaLR 1 364 0 2614 237 46 50 chr6 131561336 131561416 -57718138 - L1MEc LINE L1 -4556 1659 1580 1444 277 36 40 chr6 131561471 131561998 -57717556 + L1MB7 LINE L1 24 548 -5994 * 1959 209 31 35 chr6 131561975 131562496 -57717058 + L1MB7 LINE L1 2800 3318 -3326 4280 196 32 14 chr6 131562496 131563656 -57715898 + L1MB7 LINE L1 5483 6656 -26 3481 276 55 27 chr6 131563694 131565171 -57714383 - L1MEc LINE L1 -4843 1553 36 742 311 150 23 chr6 131565320 131565754 -57713800 - L2 LINE L2 0 3313 2825 723 310 103 22 chr6 131565890 131566072 -57713482 + MLT1L LTR MaLR 137 303 -312 986 230 23 18 chr6 131566072 131566289 -57713265 + MER20 DNA MER1_type 1 218 -1 723 310 103 22 chr6 131566289 131566512 -57713042 + MLT1L LTR MaLR 303 575 -40 347 247 274 21 chr6 131566512 131566702 -57712852 - L2 LINE L2 -1021 2293 2056 * 950 249 4 22 chr6 131566700 131566929 -57712625 - MIR SINE MIR 0 262 38 566 178 67 92 chr6 131566930 131567126 -57712428 + MLT1A1 LTR MaLR 3 196 -169 430 353 38 17 chr6 131567191 131567426 -57712128 - L2 LINE L2 -259 3054 2815 519 248 14 28 chr6 131567436 131567577 -57711977 + MLT1A1 LTR MaLR 225 363 -2 617 325 21 4 chr6 131567630 131567867 -57711687 - L2 LINE L2 -1282 2032 1792 21 36 0 0 chr6 131568805 131568833 -57710721 + AT_rich Low_complexity Low_complexity 1 28 0 243 359 13 0 chr6 131568938 131569016 -57710538 + MIR SINE MIR 67 145 -63 858 251 121 54 chr6 131570268 131570583 -57708971 - L2 LINE L2 -902 2412 2077 308 206 0 15 chr6 131570749 131570817 -57708737 + L1PA8A LINE L1 6063 6129 -2 21 0 0 0 chr6 131571850 131571871 -57707683 + AT_rich Low_complexity Low_complexity 1 21 0 2002 244 52 10 chr6 131572171 131572667 -57706887 - LTR40a LTR ERVL 0 519 3 21 36 0 0 chr6 131572994 131573022 -57706532 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr6 131573331 131573381 -57706173 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr6 131573440 131573462 -57706092 + AT_rich Low_complexity Low_complexity 1 22 0 497 77 0 8 chr6 131573723 131573795 -57705759 + MLT2B3 LTR ERVL 2 68 -329 2468 178 25 19 chr6 131573917 131574357 -57705197 + MLT2B3 LTR ERVL 69 505 -49 339 44 0 0 chr6 131574357 131574402 -57705152 + (TC)n Simple_repeat Simple_repeat 1 45 0 2934 91 4 45 chr6 131574402 131574886 -57704668 + MER4C LTR ERV1 2 465 0 321 68 0 0 chr6 131574890 131574934 -57704620 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 2468 178 25 19 chr6 131574934 131574966 -57704588 + MLT2B3 LTR ERVL 507 550 -4 531 311 58 1 chr6 131574967 131575213 -57704341 - L1ME LINE L1 -472 5649 5377 289 247 35 35 chr6 131576052 131576137 -57703417 + MIR SINE MIR 29 113 -149 536 284 19 28 chr6 131576173 131576388 -57703166 - HERVL LTR ERVL -1665 3989 3777 1409 161 93 29 chr6 131576440 131576719 -57702835 - AluJo SINE Alu -14 298 2 333 244 199 51 chr6 131576727 131576883 -57702671 - MER5A DNA MER1_type -2 187 9 320 313 45 0 chr6 131576931 131577043 -57702511 - HERVL LTR ERVL -3013 2751 2635 255 261 29 0 chr6 131577176 131577245 -57702309 - HERVL LTR ERVL -3261 2503 2433 551 340 51 51 chr6 131577287 131577717 -57701837 - HERVL LTR ERVL -3448 2316 1887 2290 109 3 0 chr6 131579147 131579450 -57700104 - AluSq SINE Alu -9 304 1 2543 118 11 8 chr6 131579771 131580145 -57699409 - THE1C LTR MaLR 0 375 1 380 88 12 113 chr6 131580389 131580469 -57699085 - Charlie5 DNA MER1_type 0 2624 2553 368 131 0 33 chr6 131580454 131580515 -57699039 - Charlie5 DNA MER1_type -2549 63 5 * 325 218 194 32 chr6 131582026 131582150 -57697404 - MIR SINE MIR 0 262 119 562 245 110 30 chr6 131583148 131583385 -57696169 + MLT1L LTR MaLR 354 609 -6 281 290 65 19 chr6 131583846 131583953 -57695601 + HAL1 LINE L1 12 123 -2384 600 287 61 13 chr6 131583957 131584187 -57695367 + HAL1 LINE L1 1677 1917 -590 268 247 108 28 chr6 131584229 131584350 -57695204 - MLT1I LTR MaLR -306 103 3 243 248 59 0 chr6 131584356 131584457 -57695097 + HAL1 LINE L1 2290 2396 -111 180 169 45 124 chr6 131584522 131584611 -57694943 + L2 LINE L2 2686 2767 -547 441 310 55 0 chr6 131585122 131585267 -57694287 - MIR3 SINE MIR -15 193 41 192 343 0 14 chr6 131586872 131586945 -57692609 + MER5A DNA MER1_type 96 167 -22 262 277 50 20 chr6 131587631 131587732 -57691822 - L2 LINE L2 0 3313 3210 351 281 88 9 chr6 131588264 131588378 -57691176 - L2 LINE L2 -1 3312 3190 324 85 0 0 chr6 131588534 131588581 -57690973 + L1PA5 LINE L1 6108 6154 0 180 0 0 0 chr6 131588598 131588618 -57690936 + (A)n Simple_repeat Simple_repeat 1 20 0 409 308 132 38 chr6 131589216 131589586 -57689968 + L1MEc LINE L1 790 1194 -5202 574 257 169 18 chr6 131589852 131590331 -57689223 + L1MEc LINE L1 1193 1703 -4512 778 226 18 0 chr6 131590380 131590548 -57689006 + L1ME LINE L1 257 427 -5643 1187 111 5 5 chr6 131590596 131590786 -57688768 - L1PBa LINE L1 -4180 2683 2494 2711 186 13 0 chr6 131590791 131591314 -57688240 + L1PB1 LINE L1 3401 3930 -2216 765 221 19 10 chr6 131591445 131591653 -57687901 + L1PB1 LINE L1 3848 4057 -2089 4946 131 52 17 chr6 131591653 131592746 -57686808 + pTR5 LTR ERV1 743 2021 -417 302 235 0 0 chr6 131592750 131592831 -57686723 + LTR30 LTR ERV1 544 624 -98 1556 66 9 5 chr6 131592838 131593071 -57686483 + pTR5 LTR ERV1 172 392 -2046 423 173 13 0 chr6 131593072 131593147 -57686407 + L1PB1 LINE L1 4055 4130 -2016 5633 161 5 26 chr6 131593152 131594608 -57684946 + L1PB1 LINE L1 4088 5573 -578 2026 128 40 13 chr6 131594608 131594906 -57684648 - AluSx SINE Alu -6 306 1 5633 161 5 26 chr6 131594906 131595425 -57684129 + L1PB1 LINE L1 5573 6017 -134 1783 158 32 4 chr6 131595425 131595704 -57683850 + AluSx SINE Alu 1 287 -25 5633 161 5 26 chr6 131595704 131595836 -57683718 + L1PB1 LINE L1 6017 6150 -1 951 264 36 50 chr6 131595875 131596376 -57683178 + L1ME LINE L1 456 949 -5121 468 120 33 33 chr6 131596354 131596446 -57683108 + L1PB1 LINE L1 5741 5832 -253 * 2053 280 68 20 chr6 131596467 131598038 -57681516 + L1ME LINE L1 990 2601 -3479 277 235 112 0 chr6 131598051 131598149 -57681405 + L1ME3A LINE L1 6034 6142 -28 213 398 0 0 chr6 131598303 131598396 -57681158 - L2 LINE L2 -785 2529 2437 2147 163 25 0 chr6 131600967 131601323 -57678231 + MLT1A1 LTR MaLR 1 365 0 311 337 87 28 chr6 131601778 131602030 -57677524 - L2 LINE L2 -346 2968 2702 410 129 0 0 chr6 131602030 131602092 -57677462 - MLT1A1 LTR MaLR -2 363 302 872 191 55 16 chr6 131602099 131602282 -57677272 - MLT1A1 LTR MaLR -175 190 1 302 287 56 37 chr6 131602303 131602411 -57677143 - L2 LINE L2 -613 2701 2592 713 257 104 14 chr6 131603190 131603412 -57676142 - MIR SINE MIR -1 261 20 432 306 149 24 chr6 131603439 131603821 -57675733 - L2 LINE L2 -1279 2035 1606 309 187 80 0 chr6 131605464 131605539 -57674015 - LTR33 LTR ERVL -18 503 423 353 338 82 30 chr6 131605635 131605866 -57673688 - LTR33 LTR ERVL -234 287 45 925 74 0 0 chr6 131606493 131606615 -57672939 - L1PA6 LINE L1 -5 6149 6028 689 342 62 51 chr6 131607102 131608019 -57671535 + ERVL LTR ERVL 1784 2710 -3054 3767 101 5 11 chr6 131608087 131608640 -57670914 + HSMAR1 DNA Mariner 738 1287 0 197 225 211 28 chr6 131608717 131608788 -57670766 + MER5C DNA MER1_type 1 84 -240 211 215 138 0 chr6 131608861 131608926 -57670628 + MER5C DNA MER1_type 251 324 0 375 351 43 31 chr6 131608928 131609283 -57670271 + ERVL LTR ERVL 2808 3202 -1906 1975 97 22 0 chr6 131609394 131609509 -57670045 + AluY SINE Alu 10 121 -193 351 0 0 0 chr6 131609509 131609548 -57670006 + (CA)n Simple_repeat Simple_repeat 2 40 0 1975 97 22 0 chr6 131609548 131609731 -57669823 + AluY SINE Alu 121 314 0 891 318 70 87 chr6 131609887 131611433 -57668121 + ERVL LTR ERVL 3582 5101 -663 448 269 62 48 chr6 131612440 131612585 -57666969 - MIR SINE MIR -89 173 27 187 244 0 22 chr6 131612879 131612924 -57666630 + L2 LINE L2 3217 3260 -12 2184 263 140 19 chr6 131613061 131613500 -57666054 + L2 LINE L2 1208 1592 -1722 2141 149 86 8 chr6 131613500 131613897 -57665657 + MSTA LTR MaLR 1 428 0 2184 263 140 19 chr6 131613897 131614373 -57665181 + L2 LINE L2 1592 2234 -1080 247 282 8 105 chr6 131614363 131614487 -57665067 + L2 LINE L2 3197 3308 -5 * 292 232 128 31 chr6 131614763 131614941 -57664613 + MLT1G1 LTR MaLR 347 567 -28 28736 117 25 59 chr6 131614943 131617685 -57661869 - L1PA6 LINE L1 -2 6152 3318 2255 106 7 0 chr6 131617685 131617987 -57661567 - AluSc SINE Alu -5 304 1 28736 117 25 59 chr6 131617987 131621610 -57657944 - L1PA6 LINE L1 -2836 3318 12 726 269 208 14 chr6 131621622 131622190 -57657364 + L1MC4a LINE L1 5256 5933 -1875 915 271 13 23 chr6 131622383 131622693 -57656861 + L1MCb LINE L1 1 307 -5738 1280 242 119 8 chr6 131622738 131623251 -57656303 - L1M4 LINE L1 -3165 2981 2412 1840 184 55 7 chr6 131623369 131623821 -57655733 + L1MC3 LINE L1 5853 6326 -1459 366 157 0 0 chr6 131623826 131623896 -57655658 - L1MC3 LINE L1 -1171 6614 6545 350 167 0 0 chr6 131623875 131623947 -57655607 + L1MC3 LINE L1 6995 7066 -719 * 26 0 0 0 chr6 131624007 131624033 -57655521 + AT_rich Low_complexity Low_complexity 1 26 0 2665 179 35 67 chr6 131624064 131624798 -57654756 + L1MC3 LINE L1 7074 7784 -1 24 0 0 0 chr6 131624823 131624847 -57654707 + AT_rich Low_complexity Low_complexity 1 24 0 911 328 101 22 chr6 131624944 131625578 -57653976 + L2 LINE L2 675 1358 -1956 594 0 0 0 chr6 131625598 131625664 -57653890 + (TTTTA)n Simple_repeat Simple_repeat 5 70 0 906 302 126 25 chr6 131625919 131626134 -57653420 + L2 LINE L2 2830 3022 -291 1974 99 4 0 chr6 131626134 131626386 -57653168 + AluSg SINE Alu 42 294 -16 906 302 126 25 chr6 131626386 131626607 -57652947 + L2 LINE L2 3022 3310 -3 964 297 51 53 chr6 131626649 131627043 -57652511 - LTR16A LTR ERVL -1 449 57 919 349 29 22 chr6 131627216 131627809 -57651745 - HERVL LTR ERVL -423 5341 4745 269 296 141 7 chr6 131627954 131628096 -57651458 - HERVL LTR ERVL -1155 4609 4449 1430 199 23 34 chr6 131628099 131628451 -57651103 - MLT1A1 LTR MaLR -11 354 7 690 208 17 17 chr6 131628670 131628843 -57650711 - MLT1A1 LTR MaLR -186 179 7 1288 303 41 11 chr6 131628863 131629389 -57650165 - HERVL LTR ERVL -898 4396 3564 2481 60 3 29 chr6 131629397 131629712 -57649842 - AluY SINE Alu -4 307 1 396 346 62 9 chr6 131629906 131630117 -57649437 - HERVL LTR ERVL -2128 3636 3415 1507 292 75 26 chr6 131630406 131631060 -57648494 - HERVL LTR ERVL -1911 3085 2400 5794 124 12 8 chr6 131631122 131632205 -57647349 - L1PA16 LINE L1 -12 6154 5072 912 227 0 0 chr6 131632189 131632409 -57647145 + L1PA16 LINE L1 4856 5075 -1071 * 364 266 115 0 chr6 131632414 131632527 -57647027 - HERVL LTR ERVL -3206 1790 1665 11648 188 24 44 chr6 131632546 131635974 -57643580 - L1MA4A LINE L1 -11 6994 3496 10105 74 6 1 chr6 131635974 131638139 -57641415 - L1PA7 LINE L1 0 6154 3997 739 136 0 0 chr6 131638139 131638249 -57641305 + 5S rRNA rRNA 6 115 -6 11648 188 24 44 chr6 131638249 131639225 -57640329 - L1MA4A LINE L1 -3507 3498 2635 8965 155 26 10 chr6 131639228 131640903 -57638651 - L1MA4A LINE L1 -4057 2792 1091 384 204 45 11 chr6 131640946 131641034 -57638520 - LTR49-int LTR ERV1 -6240 91 1 417 74 0 0 chr6 131641042 131641096 -57638458 - LTR49 LTR ERV1 -6 589 536 1292 195 16 83 chr6 131641314 131641689 -57637865 + MLT1A2 LTR MaLR 18 367 -7 467 293 47 4 chr6 131641811 131642043 -57637511 - HERVL LTR ERVL -3645 1351 1110 1831 193 45 35 chr6 131642272 131642734 -57636820 - MLT1C LTR MaLR 0 467 1 516 296 31 53 chr6 131642955 131643181 -57636373 + MIR SINE MIR 18 238 -24 4578 103 3 6 chr6 131643214 131643905 -57635649 - L1MA2 LINE L1 0 6304 5616 665 177 16 0 chr6 131644285 131644409 -57635145 - MER96 DNA MER1_type? 0 175 50 471 213 134 67 chr6 131644658 131644822 -57634732 + MER58B DNA MER1_type 167 341 0 21 0 0 0 chr6 131645747 131645768 -57633786 + AT_rich Low_complexity Low_complexity 1 21 0 389 345 25 15 chr6 131646003 131646200 -57633354 + L1ME4a LINE L1 5715 5913 -208 1857 152 119 74 chr6 131646213 131646399 -57633155 + MLT1C LTR MaLR 1 177 -328 1707 172 25 0 chr6 131646399 131646678 -57632876 + AluJb SINE Alu 5 290 -22 1857 152 119 74 chr6 131646678 131646946 -57632608 + MLT1C LTR MaLR 177 505 0 393 22 0 0 chr6 131646978 131647024 -57632530 + (TG)n Simple_repeat Simple_repeat 1 46 0 424 0 36 0 chr6 131647120 131647176 -57632378 + (TA)n Simple_repeat Simple_repeat 2 59 0 5420 150 6 9 chr6 131647184 131647540 -57632014 - L1PB2 LINE L1 -18 6133 5778 2199 92 0 43 chr6 131647540 131647865 -57631689 - AluY SINE Alu 0 311 1 5420 150 6 9 chr6 131647865 131649008 -57630546 - L1PB2 LINE L1 -373 5778 4639 365 343 34 17 chr6 131649008 131649183 -57630371 + L2 LINE L2 3136 3313 0 359 345 49 31 chr6 131650435 131650661 -57628893 + L2 LINE L2 2999 3228 -44 2099 148 43 14 chr6 131651445 131651797 -57627757 + THE1B LTR MaLR 1 362 -2 2956 72 0 0 chr6 131651799 131652199 -57627355 + THE1B-int LTR MaLR 1 400 -1180 590 186 135 32 chr6 131652231 131652387 -57627167 + MLT1E2 LTR MaLR 217 388 -238 8118 142 41 21 chr6 131652390 131653887 -57625667 + Tigger2 DNA MER2_type 1 1527 -1191 337 165 24 28 chr6 131653887 131654138 -57625416 + (TA)n Simple_repeat Simple_repeat 1 249 0 7136 137 19 3 chr6 131654138 131655315 -57624239 + Tigger2 DNA MER2_type 1524 2718 0 400 229 219 65 chr6 131655316 131655517 -57624037 + MLT1E2 LTR MaLR 423 654 0 227 378 0 0 chr6 131655710 131655792 -57623762 + MLT1K LTR MaLR 210 291 -297 619 223 57 11 chr6 131655819 131655994 -57623560 + MLT1K LTR MaLR 398 580 -8 267 286 238 16 chr6 131656267 131656393 -57623161 + L2 LINE L2 3117 3270 -2 206 198 83 115 chr6 131656680 131656776 -57622778 - MIR SINE MIR -76 132 40 7275 56 1 4 chr6 131657918 131658911 -57620643 - L1PA5 LINE L1 -754 5392 4403 5527 68 20 7 chr6 131658911 131659641 -57619913 + L1PA5 LINE L1 5415 6154 0 2376 114 39 3 chr6 131660355 131660713 -57618841 + THE1C LTR MaLR 1 371 -4 834 218 12 0 chr6 131660736 131660906 -57618648 - MER45A DNA AcHobo -1 177 6 820 242 22 0 chr6 131661139 131661321 -57618233 + MER5A DNA MER1_type 1 186 -3 263 314 107 21 chr6 131661327 131661569 -57617985 - L2 LINE L2 -705 2609 2347 30 69 0 0 chr6 131661944 131662002 -57617552 + AT_rich Low_complexity Low_complexity 1 58 0 1526 209 117 28 chr6 131662006 131662597 -57616957 + L1ME2 LINE L1 5219 5862 -302 3522 220 81 52 chr6 131662604 131664007 -57615547 + L1MD1 LINE L1 284 1878 -4662 7898 223 39 13 chr6 131664015 131667254 -57612300 + L1MD1 LINE L1 3014 6168 -2221 387 0 0 0 chr6 131667254 131667297 -57612257 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5444 57 7 0 chr6 131667297 131667982 -57611572 - L1PA8 LINE L1 -17 6155 5466 7898 223 39 13 chr6 131667982 131668273 -57611281 + L1MD1 LINE L1 6167 8388 -1 433 119 0 0 chr6 131668275 131668342 -57611212 + L1ME1 LINE L1 5859 5925 -241 538 251 53 16 chr6 131668344 131668531 -57611023 + L1ME1 LINE L1 5962 6155 -11 354 211 73 9 chr6 131668600 131668709 -57610845 - Charlie7 DNA MER1_type -266 2346 2231 390 219 126 33 chr6 131668750 131668901 -57610653 - Charlie7 DNA MER1_type -2121 491 327 3564 127 12 13 chr6 131669056 131669653 -57609901 - L1P LINE L1 -5540 606 11 1871 167 0 0 chr6 131669710 131669991 -57609563 - AluJb SINE Alu -12 300 20 321 268 0 0 chr6 131669996 131670067 -57609487 - MER5A DNA MER1_type 0 189 119 219 167 0 0 chr6 131670086 131670128 -57609426 + (CA)n Simple_repeat Simple_repeat 1 42 0 583 185 0 19 chr6 131670131 131670239 -57609315 - MER5A DNA MER1_type -83 106 1 38114 37 27 1 chr6 131670373 131675282 -57604272 + L1P LINE L1 1 5033 -1113 2184 107 3 3 chr6 131675413 131675723 -57603831 - AluSg SINE Alu 0 310 1 227 239 97 35 chr6 131675826 131675939 -57603615 - Charlie7 DNA MER1_type -2442 170 51 1341 92 0 5 chr6 131675939 131676123 -57603431 - AluY SINE Alu -7 304 122 257 0 30 0 chr6 131676123 131676156 -57603398 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 6602 17 0 0 chr6 131676156 131676940 -57602614 - L1PA2 LINE L1 -16 6139 5356 5661 28 1 0 chr6 131676936 131677656 -57601898 + L1PA2 LINE L1 4647 5367 -779 * 1104 68 0 0 chr6 131677656 131677788 -57601766 - AluY SINE Alu -179 132 1 187 240 20 40 chr6 131678230 131678280 -57601274 - MIR3 SINE MIR 0 208 160 24 53 0 0 chr6 131679161 131679199 -57600355 + AT_rich Low_complexity Low_complexity 1 38 0 35080 60 3 5 chr6 131679199 131684783 -57594771 - L1PA5 LINE L1 0 6154 584 5282 151 6 11 chr6 131684917 131685255 -57594299 - L1PB2 LINE L1 -40 6111 5773 2146 96 0 46 chr6 131685255 131685579 -57593975 - AluY SINE Alu -2 309 1 5282 151 6 11 chr6 131685579 131686722 -57592832 - L1PB2 LINE L1 -378 5773 4639 354 343 34 17 chr6 131686722 131686897 -57592657 + L2 LINE L2 3136 3313 0 359 345 49 31 chr6 131688147 131688373 -57591181 + L2 LINE L2 2999 3228 -44 2099 148 43 14 chr6 131689157 131689509 -57590045 + THE1B LTR MaLR 1 362 -2 35395 28 17 1 chr6 131689509 131695529 -57584025 + L1PA2 LINE L1 1 6144 -11 258 81 0 0 chr6 131695540 131695577 -57583977 + (A)n Simple_repeat Simple_repeat 1 37 0 3114 70 0 0 chr6 131695581 131695981 -57583573 + THE1B-int LTR MaLR 1 400 -1180 643 186 135 32 chr6 131696013 131696169 -57583385 + MLT1E2 LTR MaLR 217 388 -238 8532 143 43 21 chr6 131696172 131697666 -57581888 + Tigger2 DNA MER2_type 1 1527 -1191 420 191 16 9 chr6 131697666 131697992 -57581562 + (TA)n Simple_repeat Simple_repeat 1 328 0 3642 130 18 2 chr6 131697992 131698560 -57580994 + Tigger2 DNA MER2_type 1524 2100 -618 7841 10 5 2 chr6 131698665 131699692 -57579862 + L1HS LINE L1 5123 6154 -1 273 75 0 0 chr6 131699697 131699737 -57579817 + (A)n Simple_repeat Simple_repeat 1 40 0 189 0 0 0 chr6 131699806 131699827 -57579727 + (TTA)n Simple_repeat Simple_repeat 1 21 0 4261 116 9 9 chr6 131699919 131700590 -57578964 + L1MA3 LINE L1 5635 6305 0 2893 170 8 4 chr6 131702005 131702510 -57577044 + L1PA8 LINE L1 2 508 -5367 26244 147 12 21 chr6 131702510 131708274 -57571280 + L1PA8 LINE L1 771 6487 0 247 355 62 24 chr6 131708402 131708613 -57570941 - L2 LINE L2 -1205 2109 1891 223 287 148 0 chr6 131708885 131708993 -57570561 + L2 LINE L2 3149 3272 0 229 145 32 0 chr6 131710500 131710562 -57568992 + (TA)n Simple_repeat Simple_repeat 1 64 0 24 0 0 0 chr6 131711086 131711110 -57568444 + AT_rich Low_complexity Low_complexity 1 24 0 790 249 17 0 chr6 131711891 131712068 -57567486 - MIR SINE MIR -13 249 70 1547 258 42 16 chr6 131712478 131712510 -57567044 - MLT1H1 LTR MaLR -2 579 549 1998 136 71 0 chr6 131712510 131712834 -57566720 + MER7A DNA MER2_type 2 346 0 1547 258 42 16 chr6 131712834 131713228 -57566326 - MLT1H1 LTR MaLR -32 549 107 180 0 0 0 chr6 131713694 131713714 -57565840 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6632 80 9 1 chr6 131713717 131715398 -57564156 - L1PA7 LINE L1 -2 6152 4462 6844 75 1 0 chr6 131715400 131716302 -57563252 + L1PA7 LINE L1 3541 4443 -1703 329 215 15 0 chr6 131716517 131716582 -57562972 + MER58 DNA MER1_type 2355 2420 0 381 272 136 86 chr6 131716596 131716934 -57562620 + MLT1J2 LTR MaLR 73 427 -23 315 0 0 0 chr6 131718319 131718354 -57561200 + (TG)n Simple_repeat Simple_repeat 2 36 0 287 49 24 0 chr6 131718767 131718808 -57560746 + (TC)n Simple_repeat Simple_repeat 2 43 0 260 262 0 24 chr6 131718808 131718892 -57560662 - L1MC4 LINE L1 -1349 6693 6612 270 0 0 0 chr6 131718898 131718928 -57560626 + (TA)n Simple_repeat Simple_repeat 2 31 0 356 346 144 32 chr6 131718928 131719338 -57560216 + HAL1 LINE L1 28 483 -2024 32 43 0 0 chr6 131719637 131719683 -57559871 + AT_rich Low_complexity Low_complexity 1 46 0 408 344 42 5 chr6 131720352 131720544 -57559010 + ERVL LTR ERVL 3252 3450 -2314 261 275 25 25 chr6 131720598 131720678 -57558876 + L2 LINE L2 3230 3309 -4 21 36 0 0 chr6 131720699 131720727 -57558827 + AT_rich Low_complexity Low_complexity 1 28 0 242 302 175 16 chr6 131721464 131721590 -57557964 - MIR SINE MIR -34 228 83 26 30 0 0 chr6 131721633 131721666 -57557888 + AT_rich Low_complexity Low_complexity 1 33 0 341 253 12 10 chr6 131721949 131722084 -57557470 + MLT1H LTR MaLR 481 549 0 5753 105 50 5 chr6 131722182 131723102 -57556452 + L1PA11 LINE L1 5205 6173 -1 213 284 0 14 chr6 131723148 131723222 -57556332 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 368 289 107 8 chr6 131723235 131723356 -57556198 - L2 LINE L2 -14 3258 3126 402 75 0 0 chr6 131723490 131723543 -57556011 - MLT2A1 LTR ERVL -2 442 390 254 116 93 12 chr6 131723551 131723637 -57555917 + (TA)n Simple_repeat Simple_repeat 1 93 0 229 211 33 33 chr6 131723646 131723736 -57555818 + L1MC4 LINE L1 6614 6703 -1339 261 264 23 0 chr6 131723752 131723839 -57555715 + L1MC4 LINE L1 6614 6702 -1340 242 256 47 0 chr6 131723762 131723848 -57555706 - L1MC4 LINE L1 -1339 6703 6614 * 207 204 0 0 chr6 131723850 131723894 -57555660 + (TA)n Simple_repeat Simple_repeat 2 45 0 1053 25 0 0 chr6 131723907 131724028 -57555526 - MLT2A1 LTR ERVL -41 403 283 1868 75 17 0 chr6 131724333 131724573 -57554981 - MLT2A1 LTR ERVL -200 244 1 194 401 93 12 chr6 131724612 131724859 -57554695 - L2 LINE L2 -349 2965 2699 1468 188 24 7 chr6 131725737 131726025 -57553529 + AluJo SINE Alu 5 297 -15 24 0 0 0 chr6 131726025 131726049 -57553505 + AT_rich Low_complexity Low_complexity 1 24 0 576 274 55 23 chr6 131726187 131726406 -57553148 - MER102a DNA MER1_type -12 318 93 730 216 47 21 chr6 131726688 131726878 -57552676 + MER3 DNA MER1_type 11 205 -4 918 174 51 6 chr6 131726900 131727078 -57552476 - MER5A DNA MER1_type -2 187 2 297 0 0 0 chr6 131727200 131727233 -57552321 + (CA)n Simple_repeat Simple_repeat 1 33 0 596 299 111 66 chr6 131728334 131728758 -57550796 + MLT1H LTR MaLR 100 542 -7 2174 61 0 36 chr6 131728965 131729274 -57550280 - AluY SINE Alu 0 314 16 557 316 36 0 chr6 131731794 131731962 -57547592 + MIR SINE MIR 47 220 -42 217 222 0 0 chr6 131732032 131732077 -57547477 - L2 LINE L2 -4 3309 3265 238 275 75 12 chr6 131732592 131732672 -57546882 + MIR SINE MIR 96 180 -82 361 251 55 86 chr6 131733420 131733583 -57545971 - MLT1H LTR MaLR -10 539 382 835 244 74 33 chr6 131733710 131733980 -57545574 - MLT1H LTR MaLR -266 283 3 830 230 63 0 chr6 131735048 131735222 -57544332 + MER5A DNA MER1_type 3 187 -2 259 96 39 0 chr6 131735396 131735448 -57544106 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 1633 186 3 30 chr6 131735867 131736168 -57543386 + AluJo SINE Alu 5 297 -15 558 278 17 0 chr6 131736208 131736384 -57543170 + Charlie7 DNA MER1_type 1 179 -2433 1984 139 19 16 chr6 131736417 131736740 -57542814 - THE1C LTR MaLR 0 375 52 1112 109 0 0 chr6 131736740 131736887 -57542667 - THE1-int LTR MaLR -644 936 790 454 37 0 0 chr6 131736887 131736941 -57542613 - THE1C LTR MaLR -321 54 1 9897 111 43 38 chr6 131736941 131738512 -57541042 - THE1C-int LTR MaLR 0 1580 1 2390 130 11 16 chr6 131738512 131738889 -57540665 - THE1C LTR MaLR 0 375 1 248 302 0 0 chr6 131738899 131738962 -57540592 + Charlie7 DNA MER1_type 241 303 -2309 1851 239 136 27 chr6 131739068 131740503 -57539051 + Charlie7 DNA MER1_type 531 2137 -475 3616 147 24 2 chr6 131740504 131741361 -57538193 + L1PA16 LINE L1 4927 5795 -371 2232 126 13 38 chr6 131741361 131741734 -57537820 - THE1B LTR MaLR 0 364 1 2539 79 6 3 chr6 131741734 131742075 -57537479 - THE1B-int LTR MaLR 0 1580 1239 835 244 74 33 chr6 131742246 131742516 -57537038 - MLT1H LTR MaLR -266 283 3 830 230 63 0 chr6 131743584 131743758 -57535796 + MER5A DNA MER1_type 3 187 -2 259 96 39 0 chr6 131743932 131743984 -57535570 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 1670 183 3 30 chr6 131744403 131744704 -57534850 + AluJo SINE Alu 5 297 -15 537 283 17 6 chr6 131744744 131744921 -57534633 + Charlie7 DNA MER1_type 1 179 -2433 1846 142 19 16 chr6 131744954 131745277 -57534277 - THE1C LTR MaLR 0 375 52 1035 116 0 0 chr6 131745277 131745424 -57534130 - THE1-int LTR MaLR -644 936 790 433 37 0 0 chr6 131745424 131745478 -57534076 - THE1C LTR MaLR -321 54 1 12065 82 7 1 chr6 131745478 131747049 -57532505 - THE1B-int LTR MaLR 0 1580 1 2117 132 22 40 chr6 131747049 131747420 -57532134 - THE1B LTR MaLR 0 364 1 2174 143 14 3 chr6 131747420 131747790 -57531764 + L1PA16 LINE L1 5791 6164 -2 470 241 195 0 chr6 131747812 131747986 -57531568 + Charlie7 DNA MER1_type 2128 2335 -277 1421 206 36 20 chr6 131748040 131748133 -57531421 + AluJb SINE Alu 1 91 -221 2094 130 130 16 chr6 131748133 131748517 -57531037 - MSTA LTR MaLR 0 428 1 1421 206 36 20 chr6 131748517 131748724 -57530830 + AluJb SINE Alu 91 306 -6 23 54 0 0 chr6 131748737 131748774 -57530780 + AT_rich Low_complexity Low_complexity 1 37 0 893 231 143 24 chr6 131750090 131750419 -57529135 + L1ME3A LINE L1 5735 6102 -68 328 360 40 7 chr6 131751303 131751453 -57528101 + L2 LINE L2 3117 3271 -1 284 384 6 38 chr6 131751490 131751649 -57527905 + MIR SINE MIR 53 206 -56 642 288 33 19 chr6 131751810 131752025 -57527529 + L2 LINE L2 3095 3312 -1 310 289 46 23 chr6 131753409 131753582 -57525972 + HsTC2 DNA Tc2 220 396 -1502 334 281 30 12 chr6 131753584 131753748 -57525806 + L1ME1 LINE L1 5102 5268 -878 1094 216 53 53 chr6 131753763 131753843 -57525711 + L1ME1 LINE L1 5327 5405 -761 2266 99 0 25 chr6 131753843 131754183 -57525371 + AluSg SINE Alu 1 310 0 1094 216 53 53 chr6 131754183 131754473 -57525081 + L1ME1 LINE L1 5405 5728 -438 1734 205 51 31 chr6 131754478 131754926 -57524628 - MLT1C LTR MaLR -2 465 9 1312 216 45 16 chr6 131754933 131755337 -57524217 + L1ME1 LINE L1 5726 6302 -32 771 189 0 0 chr6 131755342 131755469 -57524085 + FLAM_C SINE Alu 1 127 -16 405 359 4 8 chr6 131755542 131755776 -57523778 + HsTC2 DNA Tc2 657 889 -1009 566 187 41 29 chr6 131755973 131756144 -57523410 + L1MA7 LINE L1 6116 6288 -3 1430 166 18 46 chr6 131756269 131756552 -57523002 - AluJo SINE Alu -18 294 20 1371 272 76 22 chr6 131757232 131757786 -57521768 + L2 LINE L2 2487 3059 -254 275 203 0 0 chr6 131757805 131757864 -57521690 + L1MA7 LINE L1 6169 6227 -64 898 293 118 23 chr6 131757938 131758337 -57521217 - LTR16A LTR ERVL -13 437 1 279 261 149 45 chr6 131758350 131758484 -57521070 + L2 LINE L2 3161 3308 -5 263 198 49 49 chr6 131759437 131759518 -57520036 + MLT1L LTR MaLR 1 81 -534 21 36 0 0 chr6 131761364 131761392 -57518162 + AT_rich Low_complexity Low_complexity 1 28 0 1921 119 22 0 chr6 131761624 131761936 -57517618 + HSMAR2 DNA Mariner 983 1301 -1 3193 164 25 71 chr6 131761952 131762736 -57516818 + L1MC3 LINE L1 6637 7384 -401 200 111 28 0 chr6 131762738 131762774 -57516780 + A-rich Low_complexity Low_complexity 4 40 0 1084 205 58 0 chr6 131762778 131763002 -57516552 + AluSx SINE Alu 1 237 -75 438 311 18 32 chr6 131763549 131763768 -57515786 - HAL1 LINE L1 -5 2502 2287 213 39 0 0 chr6 131763768 131763794 -57515760 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 269 241 172 46 chr6 131763841 131764015 -57515539 + L2 LINE L2 3118 3313 0 23572 94 12 2 chr6 131764124 131768549 -57511005 - L1PA7 LINE L1 -1 6153 1686 216 0 0 0 chr6 131768661 131768685 -57510869 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 21 0 0 0 chr6 131769069 131769090 -57510464 + AT_rich Low_complexity Low_complexity 1 21 0 1920 178 16 6 chr6 131769226 131769591 -57509963 + MLT2D LTR ERVL 1 369 -45 332 321 33 19 chr6 131770068 131770229 -57509325 - MIR SINE MIR -57 151 14 22 56 0 0 chr6 131772704 131772740 -57506814 + AT_rich Low_complexity Low_complexity 1 36 0 349 301 20 52 chr6 131772781 131772934 -57506620 + L2 LINE L2 3165 3312 -1 4480 216 62 10 chr6 131773466 131774603 -57504951 + L1MC3 LINE L1 5426 6621 -1164 4122 117 21 64 chr6 131774604 131775397 -57504157 + HSMAR2 DNA Mariner 2 760 -542 454 94 16 0 chr6 131775516 131775580 -57503974 + AluSx SINE Alu 234 298 -14 1914 154 24 3 chr6 131775589 131775959 -57503595 + L1MC3 LINE L1 7407 7784 -1 1023 236 19 19 chr6 131776063 131776330 -57503224 + MLT2B1 LTR ERVL 1 267 -253 6040 119 13 19 chr6 131776478 131777888 -57501666 + L1P3 LINE L1 793 2199 -4262 862 175 72 6 chr6 131778212 131778378 -57501176 - AluSg/x SINE Alu 0 312 136 203 171 0 0 chr6 131778380 131778421 -57501133 + (TA)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr6 131778545 131778569 -57500985 + (TA)n Simple_repeat Simple_repeat 1 24 0 871 151 0 0 chr6 131778569 131778688 -57500866 - AluSq/x SINE Alu -194 119 1 24 0 0 0 chr6 131778729 131778753 -57500801 + AT_rich Low_complexity Low_complexity 1 24 0 1076 169 72 30 chr6 131779082 131779465 -57500089 + MLT2B2 LTR ERVL 5 515 0 840 230 129 25 chr6 131779711 131780037 -57499517 + Tigger5 DNA MER2_type 7 2323 0 189 147 0 0 chr6 131780043 131780077 -57499477 + (GA)n Simple_repeat Simple_repeat 1 34 0 2034 141 131 11 chr6 131780757 131781139 -57498415 - MSTA LTR MaLR 0 428 1 180 97 0 0 chr6 131781202 131781233 -57498321 + (A)n Simple_repeat Simple_repeat 1 31 0 451 248 31 0 chr6 131781306 131781435 -57498119 + MER103 DNA DNA 27 159 -7 234 0 0 0 chr6 131781935 131781961 -57497593 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr6 131782107 131782128 -57497426 + AT_rich Low_complexity Low_complexity 1 21 0 356 292 17 17 chr6 131782720 131782898 -57496656 - L1ME LINE L1 -639 5531 5354 13180 23 13 0 chr6 131782914 131785242 -57494312 - L1PA3 LINE L1 0 6155 3807 22148 50 43 3 chr6 131785342 131788343 -57491211 - L1PA3 LINE L1 -3023 3123 3 37707 40 28 1 chr6 131789044 131793958 -57485596 - L1P LINE L1 -1104 5042 1 887 262 80 21 chr6 131793964 131794441 -57485113 - L1ME LINE L1 -2054 4092 3588 1361 228 32 54 chr6 131795641 131795785 -57483769 - L1ME1 LINE L1 -1 6165 6019 180 0 0 0 chr6 131795785 131795805 -57483749 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1361 228 32 54 chr6 131795805 131795827 -57483727 - L1ME1 LINE L1 -147 6019 5998 14465 133 29 12 chr6 131795827 131796743 -57482811 - Tigger1 DNA MER2_type 0 2418 1519 2435 73 0 19 chr6 131796743 131797060 -57482494 - AluY SINE Alu 0 311 1 14465 133 29 12 chr6 131797060 131798520 -57481034 - Tigger1 DNA MER2_type -899 1519 1 1361 228 32 54 chr6 131798520 131798813 -57480741 - L1ME1 LINE L1 -168 5998 5715 311 339 9 9 chr6 131799146 131799261 -57480293 + L2 LINE L2 3199 3313 0 188 184 20 0 chr6 131799346 131799395 -57480159 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 5844 207 128 15 chr6 131799878 131801764 -57477790 - Zaphod DNA AcHobo -15 4016 1918 23 0 0 0 chr6 131801785 131801808 -57477746 + GC_rich Low_complexity Low_complexity 1 23 0 736 210 14 14 chr6 131801824 131801967 -57477587 - AluJb SINE Alu -34 278 136 434 289 17 50 chr6 131801968 131802207 -57477347 - Zaphod DNA AcHobo -2101 1930 1700 276 298 83 50 chr6 131802212 131802333 -57477221 + L2 LINE L2 2943 3067 -246 491 219 66 117 chr6 131802462 131802658 -57476896 + L2 LINE L2 3082 3267 -5 965 201 27 0 chr6 131802760 131802944 -57476610 + MER5A DNA MER1_type 1 189 0 195 100 0 0 chr6 131804070 131804100 -57475454 + (CA)n Simple_repeat Simple_repeat 2 31 0 26 0 0 0 chr6 131804273 131804299 -57475255 + AT_rich Low_complexity Low_complexity 1 26 0 211 349 48 16 chr6 131804463 131804589 -57474965 + MIR SINE MIR 17 146 -62 2313 68 0 4 chr6 131804837 131805145 -57474409 + AluSg SINE Alu 1 307 0 2405 133 36 19 chr6 131807131 131807552 -57472002 + MSTA LTR MaLR 1 428 0 316 185 0 0 chr6 131807566 131807620 -57471934 - THE1-int LTR MaLR -569 1011 958 * 5008 174 14 1 chr6 131807611 131808485 -57471069 + MSTA-int LTR MaLR 767 1651 0 2138 119 38 74 chr6 131808485 131808683 -57470871 + MSTA LTR MaLR 1 205 -223 2862 114 11 0 chr6 131808683 131809120 -57470434 + L1PA14 LINE L1 5717 6158 -3 2138 119 38 74 chr6 131809120 131809365 -57470189 + MSTA LTR MaLR 205 428 0 1519 182 3 35 chr6 131809939 131810252 -57469302 + AluSx SINE Alu 1 303 -9 444 264 14 27 chr6 131810290 131810445 -57469109 + LTR16A LTR ERVL 1 152 -298 725 284 25 8 chr6 131810524 131810767 -57468787 - LTR16A LTR ERVL -18 432 186 1004 301 53 10 chr6 131810778 131811444 -57468110 + HERV16 LTR ERVL 1255 2016 -2980 440 289 112 62 chr6 131811498 131811802 -57467752 + HERV16 LTR ERVL 2169 2487 -2509 579 260 24 18 chr6 131812386 131812555 -57466999 + HERV16 LTR ERVL 1847 2016 -2980 910 303 79 36 chr6 131812609 131813230 -57466324 + HERV16 LTR ERVL 2169 2841 -2813 309 250 6 151 chr6 131813275 131813447 -57466107 + HERV16 LTR ERVL 3047 3193 -2461 943 230 95 69 chr6 131813449 131813828 -57465726 + MSTD LTR MaLR 6 394 -2 596 363 16 0 chr6 131813848 131814154 -57465400 + HERV16 LTR ERVL 3243 3553 -2211 577 365 45 11 chr6 131814583 131814958 -57464596 + HERV16 LTR ERVL 4525 4912 -852 548 200 46 0 chr6 131814960 131815119 -57464435 - MLT1A1 LTR MaLR 0 457 199 333 184 16 128 chr6 131815150 131815275 -57464279 - MSTD LTR MaLR -172 193 83 * 626 219 3 134 chr6 131815270 131815627 -57463927 - TAR1 Satellite telomeric -1789 322 13 * 1715 195 4 52 chr6 131815436 131815914 -57463640 - LTR60 LTR ERV1 -21 565 111 474 255 0 0 chr6 131815957 131816063 -57463491 - LTR60 LTR ERV1 -480 106 1 430 190 0 0 chr6 131816063 131816142 -57463412 - MSTD LTR MaLR -317 79 1 256 330 21 63 chr6 131816159 131816350 -57463204 + HERV16 LTR ERVL 4928 5110 -654 381 248 21 78 chr6 131816899 131817209 -57462345 + LTR16A LTR ERVL 93 441 -9 1898 210 129 83 chr6 131817217 131817987 -57461567 + MER21B LTR ERV1 1 805 -58 1566 200 71 24 chr6 131817987 131818412 -57461142 + LTR56 LTR ERV1 1 445 0 316 306 84 65 chr6 131818980 131819241 -57460313 + MER4B-int LTR ERV1 430 695 -6063 849 102 4 3 chr6 131819951 131820185 -57459369 + AluSp SINE Alu 1 294 -19 1108 244 50 3 chr6 131821580 131821883 -57457671 + MLT1B LTR MaLR 74 390 0 426 319 18 0 chr6 131822609 131822722 -57456832 + MIR SINE MIR 5 119 -143 2188 143 69 0 chr6 131822726 131823118 -57456436 + MSTA LTR MaLR 1 419 -9 418 167 12 24 chr6 131823136 131823220 -57456334 + MIR SINE MIR 132 214 -48 339 326 54 0 chr6 131823284 131823413 -57456141 + L1MC/D LINE L1 5682 5817 -1991 21461 156 23 13 chr6 131823442 131827784 -57451770 + L1M1 LINE L1 16 4314 -3251 2088 184 76 0 chr6 131827784 131828181 -57451373 + MSTA LTR MaLR 2 428 0 21461 156 23 13 chr6 131828181 131828690 -57450864 + L1M1 LINE L1 4314 4816 -2749 2361 111 0 3 chr6 131828690 131828996 -57450558 + AluSc SINE Alu 1 305 -4 21461 156 23 13 chr6 131828996 131830311 -57449243 + L1M1 LINE L1 4816 6237 -1328 24777 118 25 23 chr6 131830436 131835560 -57443994 - L1P3 LINE L1 -1254 5207 2 198 243 43 29 chr6 131836409 131836479 -57443075 - L3b LINE CR1 -390 1193 1123 241 293 26 0 chr6 131836505 131836621 -57442933 + L1P LINE L1 5277 5395 -756 285 181 288 31 chr6 131836724 131836884 -57442670 + L1ME LINE L1 5529 5729 -392 1920 149 0 3 chr6 131836957 131837252 -57442302 - AluJb SINE Alu -18 294 1 23 0 0 0 chr6 131837257 131837280 -57442274 + AT_rich Low_complexity Low_complexity 1 23 0 1814 262 82 14 chr6 131837463 131838195 -57441359 + L1MC4a LINE L1 5256 6037 -1771 1117 257 99 69 chr6 131838206 131838878 -57440676 + L1MC4a LINE L1 6123 6826 -982 3801 142 37 24 chr6 131838878 131839589 -57439965 + L1MB2 LINE L1 5452 6171 0 1117 257 99 69 chr6 131839589 131839752 -57439802 + L1MC4a LINE L1 6826 6983 -825 218 360 12 23 chr6 131840876 131840962 -57438592 + MIR SINE MIR 45 129 -79 300 289 151 40 chr6 131841590 131841815 -57437739 + MIR SINE MIR 13 262 0 25 0 0 0 chr6 131842081 131842106 -57437448 + AT_rich Low_complexity Low_complexity 1 25 0 2008 161 0 10 chr6 131842138 131842443 -57437111 - AluJb SINE Alu -10 302 1 716 229 40 46 chr6 131842687 131842862 -57436692 - MER5B DNA MER1_type -1 177 4 2186 80 0 14 chr6 131843204 131843544 -57436010 + AluY SINE Alu 1 336 0 1061 293 21 57 chr6 131843594 131844017 -57435537 + L2 LINE L2 2901 3308 -5 1580 177 19 7 chr6 131844266 131844537 -57435017 + AluJo SINE Alu 14 287 -25 198 0 0 0 chr6 131844942 131844964 -57434590 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 396 40 0 0 chr6 131844963 131845013 -57434541 + (GA)n Simple_repeat Simple_repeat 1 50 0 3770 90 326 0 chr6 131845422 131846045 -57433509 + LTR12 LTR ERV1 1 826 0 256 254 107 16 chr6 131847424 131847546 -57432008 + L1ME LINE L1 5610 5742 -379 309 355 19 0 chr6 131848802 131848909 -57430645 - MIR3 SINE MIR -9 199 91 440 323 51 15 chr6 131849330 131849525 -57430029 - MIR SINE MIR -56 206 5 821 210 0 5 chr6 131850492 131850678 -57428876 + L1M4 LINE L1 4941 5125 -1021 326 183 14 14 chr6 131850678 131850749 -57428805 + AluSp SINE Alu 121 191 -112 11456 106 86 59 chr6 131851892 131852293 -57427261 - MER57B-int LTR ERV1 -280 6318 5929 1864 138 57 14 chr6 131852293 131852576 -57426978 - AluSx SINE Alu -17 295 1 11456 106 86 59 chr6 131852576 131854591 -57424963 - MER57B-int LTR ERV1 -669 5929 3837 301 183 85 0 chr6 131854590 131854672 -57424882 - MER57B-int LTR ERV1 -2917 3681 3593 * 4571 144 121 23 chr6 131854672 131854938 -57424616 - MER57B-int LTR ERV1 -1332 3834 3596 2271 76 0 0 chr6 131854938 131855215 -57424339 + AluY SINE Alu 22 298 -13 4571 144 121 23 chr6 131855215 131857172 -57422382 - MER57B-int LTR ERV1 -1570 3596 1555 3383 132 54 4 chr6 131857169 131857706 -57421848 - MER57B-int LTR ERV1 -5095 851 288 * 3997 145 27 8 chr6 131857700 131858362 -57421192 - MER57B-int LTR ERV1 -6862 675 1 2667 129 21 2 chr6 131858362 131858788 -57420766 - MER57B LTR ERV1 0 434 1 322 209 0 0 chr6 131858788 131858855 -57420699 + LTR8 LTR ERV1 124 190 -501 4697 59 2 3 chr6 131858861 131859453 -57420101 - LTR10C LTR ERV1 0 591 1 5283 292 43 29 chr6 131859454 131861707 -57417847 - LTR10C-int LTR ERV1 -2 6647 4363 2145 121 0 22 chr6 131861912 131862227 -57417327 + AluY SINE Alu 1 308 -3 3411 110 25 7 chr6 131862227 131862829 -57416725 - LTR10C-int LTR ERV1 -4365 2531 1919 230 364 0 8 chr6 131862854 131862983 -57416571 + CT-rich Low_complexity Low_complexity 1 128 0 768 265 40 8 chr6 131864721 131864974 -57414580 - LTR10C-int LTR ERV1 -6360 289 29 4852 56 0 0 chr6 131865001 131865592 -57413962 - LTR10C LTR ERV1 0 591 1 7427 119 151 108 chr6 131865593 131867077 -57412477 - MER4A-int LTR ERV1 -4059 2539 931 243 88 0 0 chr6 131867077 131867111 -57412443 + (CA)n Simple_repeat Simple_repeat 1 34 0 7427 119 151 108 chr6 131867111 131867774 -57411780 - MER4A-int LTR ERV1 -5667 931 298 1664 170 150 40 chr6 131867774 131868268 -57411286 + LTR10A LTR ERV1 1 548 -61 1633 91 106 7 chr6 131868281 131868555 -57410999 - MER4A-int LTR ERV1 -6297 301 1 1882 112 6 25 chr6 131868558 131868910 -57410644 - MER4A LTR ERV1 0 664 261 536 135 21 10 chr6 131868910 131869006 -57410548 - MER4A LTR ERV1 -566 98 2 252 0 0 0 chr6 131869583 131869611 -57409943 + (A)n Simple_repeat Simple_repeat 1 28 0 998 128 0 7 chr6 131870878 131871026 -57408528 - AluSg/x SINE Alu -3 309 163 468 220 163 7 chr6 131871075 131871216 -57408338 - AluY SINE Alu -10 301 139 586 165 6 92 chr6 131871220 131871384 -57408170 + MER20 DNA MER1_type 54 203 -16 2123 101 11 3 chr6 131871619 131871905 -57407649 + AluSx SINE Alu 16 303 -9 357 231 28 46 chr6 131871951 131872059 -57407495 - MIR3 SINE MIR -11 197 92 2616 36 7 0 chr6 131872160 131872469 -57407085 + AluY SINE Alu 1 311 0 257 255 117 41 chr6 131872615 131872760 -57406794 + MIR SINE MIR 101 256 -6 674 265 51 107 chr6 131872763 131873351 -57406203 - LTR67 LTR ERVL -1 556 2 2332 109 0 0 chr6 131873523 131873836 -57405718 - AluSq SINE Alu 0 313 1 24 0 0 0 chr6 131874407 131874431 -57405123 + AT_rich Low_complexity Low_complexity 1 24 0 331 362 86 30 chr6 131874533 131874765 -57404789 - L2 LINE L2 -13 3259 3015 731 215 0 0 chr6 131874826 131874956 -57404598 - FLAM_A SINE Alu -2 131 2 23 33 0 0 chr6 131875074 131875104 -57404450 + AT_rich Low_complexity Low_complexity 1 30 0 207 189 149 14 chr6 131875235 131875309 -57404245 + MIR SINE MIR 167 250 -12 274 304 18 27 chr6 131876320 131876432 -57403122 + MIR SINE MIR 15 125 -137 845 144 5 122 chr6 131876443 131876631 -57402923 + FRAM SINE Alu 1 162 -14 369 218 109 0 chr6 131876635 131876736 -57402818 + MIR SINE MIR 150 261 -1 1751 169 42 9 chr6 131877578 131877915 -57401639 + MER7A DNA MER2_type 1 346 0 248 248 10 30 chr6 131878032 131878112 -57401442 - MIR SINE MIR -115 93 31 201 121 0 0 chr6 131880484 131880517 -57399037 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 677 175 26 0 chr6 131880526 131880640 -57398914 - FLAM_C SINE Alu -16 117 1 2303 138 11 72 chr6 131880690 131881146 -57398408 + MSTC LTR MaLR 1 428 0 25 51 0 0 chr6 131881202 131881241 -57398313 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr6 131881959 131881981 -57397573 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr6 131882036 131882064 -57397490 + AT_rich Low_complexity Low_complexity 1 28 0 1185 169 72 4 chr6 131882121 131882370 -57397184 - L1MA5 LINE L1 0 6300 6035 1422 146 92 60 chr6 131882372 131882687 -57396867 + MER1B DNA MER1_type 15 339 0 1903 132 73 35 chr6 131882689 131882771 -57396783 - L1MA5 LINE L1 -271 6029 5952 1772 167 3 48 chr6 131882771 131883083 -57396471 - AluJo SINE Alu -12 300 3 1903 132 73 35 chr6 131883083 131883426 -57396128 - L1MA5 LINE L1 -348 5952 5588 5867 147 13 6 chr6 131883713 131885794 -57393760 + L1PB1 LINE L1 4090 6182 0 773 206 129 58 chr6 131885799 131886178 -57393376 + LTR56 LTR ERV1 40 445 0 567 367 57 48 chr6 131886549 131887348 -57392206 - L2 LINE L2 -4 3268 2451 422 230 18 97 chr6 131887409 131887574 -57391980 - MIR SINE MIR 0 262 111 744 308 75 42 chr6 131887869 131888255 -57391299 - L2 LINE L2 -1867 1447 1049 1535 189 84 49 chr6 131888375 131888785 -57390769 + MLT1C LTR MaLR 1 430 -37 2299 89 7 0 chr6 131888785 131889077 -57390477 - AluSx SINE Alu -18 294 1 1535 189 84 49 chr6 131889077 131889117 -57390437 + MLT1C LTR MaLR 430 467 0 219 280 30 50 chr6 131889117 131889217 -57390337 - L2 LINE L2 -895 2419 2322 369 375 38 73 chr6 131889407 131889778 -57389776 + L2 LINE L2 2829 3186 -86 2125 103 7 0 chr6 131890010 131890326 -57389228 + AluSx SINE Alu 1 318 0 2192 128 3 3 chr6 131890559 131890871 -57388683 - AluJb SINE Alu 0 312 1 228 208 222 14 chr6 131890918 131890990 -57388564 + L2 LINE L2 3186 3272 0 259 246 101 0 chr6 131891051 131891120 -57388434 + L2 LINE L2 3195 3270 -43 2239 115 3 3 chr6 131891541 131891854 -57387700 + AluSq SINE Alu 1 313 0 228 341 7 80 chr6 131891877 131891982 -57387572 + L2 LINE L2 2767 2861 -453 1492 96 30 35 chr6 131891982 131892212 -57387342 - MER30 DNA MER1_type 0 230 2 228 341 7 80 chr6 131892212 131892244 -57387310 + L2 LINE L2 2861 2894 -420 871 114 57 157 chr6 131892262 131892594 -57386960 - Charlie1 DNA MER1_type -4 2757 2459 2098 111 0 17 chr6 131892595 131892883 -57386671 + AluSx SINE Alu 11 293 -19 582 72 187 108 chr6 131892883 131893022 -57386532 + MSTA LTR MaLR 279 428 0 1155 222 15 41 chr6 131893022 131893292 -57386262 + AluJo SINE Alu 43 305 -7 1005 206 39 0 chr6 131893309 131893513 -57386041 - Charlie1a DNA MER1_type -1207 248 37 38 0 0 0 chr6 131893624 131893662 -57385892 + AT_rich Low_complexity Low_complexity 1 38 0 525 172 11 11 chr6 131893678 131893771 -57385783 - FLAM_A SINE Alu -18 124 32 318 206 122 37 chr6 131893784 131893891 -57385663 + MIR SINE MIR 74 189 -73 2321 65 0 4 chr6 131894408 131894687 -57384867 + AluY SINE Alu 29 306 -5 327 260 146 0 chr6 131895551 131895647 -57383907 + MIR SINE MIR 42 151 -57 393 231 10 58 chr6 131895996 131896073 -57383481 + MER21B LTR ERV1 209 281 -582 2043 181 59 17 chr6 131896073 131896482 -57383072 - MSTB LTR MaLR 0 426 1 393 231 10 58 chr6 131896482 131896508 -57383046 + MER21B LTR ERV1 281 307 -556 4926 139 13 5 chr6 131896620 131898186 -57381368 + L1MA3 LINE L1 4353 6033 -272 1967 118 9 15 chr6 131898169 131898507 -57381047 + L1MA3 LINE L1 5969 6304 -1 * 315 224 12 24 chr6 131898802 131898887 -57380667 + L1ME4a LINE L1 5966 6049 -72 337 344 0 2 chr6 131899987 131900114 -57379440 + MIR SINE MIR 32 156 -61 186 351 0 0 chr6 131900515 131900572 -57378982 + L2 LINE L2 3251 3307 -6 1281 156 34 22 chr6 131901125 131901394 -57378160 - L1MA9 LINE L1 0 6312 6041 292 238 98 78 chr6 131901594 131901731 -57377823 + MIR SINE MIR 63 207 -55 2323 72 3 0 chr6 131901731 131902021 -57377533 - AluSg SINE Alu -19 291 1 292 238 98 78 chr6 131902021 131902076 -57377478 + MIR SINE MIR 207 259 -3 5076 213 47 59 chr6 131902344 131903945 -57375609 + MER45R DNA AcHobo 1 1581 0 2272 80 3 0 chr6 131904131 131904433 -57375121 + AluY SINE Alu 1 303 -8 211 444 13 0 chr6 131904466 131904619 -57374935 + L2 LINE L2 3101 3255 -17 264 30 0 0 chr6 131906055 131906088 -57373466 + (GA)n Simple_repeat Simple_repeat 2 34 0 733 321 80 35 chr6 131908184 131908636 -57370918 + L2 LINE L2 1867 2338 -976 1834 232 18 16 chr6 131908956 131909456 -57370098 - Charlie1b DNA MER1_type -18 505 5 751 193 0 15 chr6 131911845 131911980 -57367574 + FLAM_C SINE Alu 1 133 -10 20524 32 0 0 chr6 131912859 131916107 -57363447 + L1PA2 LINE L1 2903 6150 -5 916 281 121 37 chr6 131916112 131917667 -57361887 + L1ME LINE L1 4077 5771 -399 2028 131 25 33 chr6 131917682 131918042 -57361512 + THE1B LTR MaLR 1 357 -7 802 11 0 0 chr6 131918300 131918395 -57361159 + L1PA2 LINE L1 6061 6155 0 619 229 0 8 chr6 131918419 131918537 -57361017 + FLAM_A SINE Alu 1 117 -16 1791 154 0 0 chr6 131918549 131918841 -57360713 + MSTA LTR MaLR 137 428 0 1873 168 6 6 chr6 131918842 131919199 -57360355 - L1MA4 LINE L1 -40 6260 5904 708 290 62 53 chr6 131919204 131919850 -57359704 - L1ME LINE L1 -432 5730 5091 1918 110 0 15 chr6 131919850 131920123 -57359431 + AluSg SINE Alu 36 304 -6 708 290 62 53 chr6 131920123 131921225 -57358329 - L1ME LINE L1 -1071 5091 3972 406 81 14 40 chr6 131921231 131921305 -57358249 - L1PA8 LINE L1 0 6172 6101 211 329 0 0 chr6 131921307 131921380 -57358174 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 268 211 122 41 chr6 131921413 131921536 -57358018 - L1ME LINE L1 -2213 3933 3801 1581 149 99 42 chr6 131921567 131921922 -57357632 + THE1C LTR MaLR 1 375 0 343 172 16 0 chr6 131922146 131922210 -57357344 + MLT1L LTR MaLR 7 71 -544 537 96 106 29 chr6 131922733 131922837 -57356717 + MSTD LTR MaLR 2 113 -283 283 100 0 0 chr6 131922950 131922990 -57356564 - MSTD LTR MaLR -258 138 99 * 801 198 39 32 chr6 131922967 131923226 -57356328 + MSTD LTR MaLR 102 390 -6 318 226 0 75 chr6 131924061 131924154 -57355400 - MIR3 SINE MIR -17 191 106 1171 141 126 22 chr6 131924674 131924944 -57354610 - L1MA8 LINE L1 -5 6286 5989 21 0 0 0 chr6 131928523 131928544 -57351010 + AT_rich Low_complexity Low_complexity 1 21 0 216 97 0 0 chr6 131930591 131930622 -57348932 + (TC)n Simple_repeat Simple_repeat 1 31 0 365 337 26 42 chr6 131934008 131934198 -57345356 + MIR SINE MIR 20 206 -56 395 265 103 101 chr6 131935677 131936337 -57343217 + L1M2 LINE L1 449 1373 -5476 456 19 0 0 chr6 131936625 131936678 -57342876 + (TAA)n Simple_repeat Simple_repeat 2 54 0 1371 143 71 19 chr6 131936701 131937009 -57342545 + MER33 DNA MER1_type 1 324 0 418 174 36 22 chr6 131937488 131937626 -57341928 + CT-rich Low_complexity Low_complexity 2 141 0 185 94 31 0 chr6 131938546 131938578 -57340976 + (TA)n Simple_repeat Simple_repeat 2 34 0 236 28 56 0 chr6 131938994 131939030 -57340524 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 296 238 51 51 chr6 131939056 131939214 -57340340 - MIR SINE MIR -52 210 54 720 295 68 0 chr6 131939767 131940004 -57339550 - MIR SINE MIR 0 262 10 240 303 208 11 chr6 131940148 131940326 -57339228 - L3b LINE CR1 -27 1556 1344 225 154 0 0 chr6 131942197 131942236 -57337318 + (CA)n Simple_repeat Simple_repeat 2 40 0 302 169 45 0 chr6 131942737 131942826 -57336728 + (TA)n Simple_repeat Simple_repeat 1 93 0 29 28 0 0 chr6 131944561 131944597 -57334957 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr6 131945378 131945420 -57334134 + AT_rich Low_complexity Low_complexity 1 42 0 720 306 81 53 chr6 131945564 131945995 -57333559 + L2 LINE L2 1546 1988 -1326 2066 277 52 19 chr6 131946014 131946805 -57332749 - HERV16 LTR ERVL -2474 2522 1688 3131 176 18 16 chr6 131946860 131947373 -57332181 + MLT2B3 LTR ERVL 1 517 -37 575 68 29 10 chr6 131947373 131947476 -57332078 + (TCTA)n Simple_repeat Simple_repeat 3 107 0 3131 176 18 16 chr6 131947476 131947513 -57332041 + MLT2B3 LTR ERVL 517 552 -2 1387 260 91 21 chr6 131947544 131947581 -57331973 - HERV16 LTR ERVL -3425 1571 1538 2696 88 13 8 chr6 131947581 131947954 -57331600 + THE1C LTR MaLR 1 375 0 1387 260 91 21 chr6 131947954 131948863 -57330691 - HERV16 LTR ERVL -3458 1538 548 425 249 55 67 chr6 131948952 131949117 -57330437 + L2 LINE L2 3151 3313 0 244 295 36 9 chr6 131949139 131949251 -57330303 + L1ME4a LINE L1 5772 5886 -235 2124 106 7 10 chr6 131950544 131950845 -57328709 + AluSp SINE Alu 1 300 -13 716 255 123 67 chr6 131951323 131951559 -57327995 - LTR67 LTR ERVL -22 535 314 2436 117 17 3 chr6 131951559 131951918 -57327636 + THE1B LTR MaLR 1 364 0 716 255 123 67 chr6 131951918 131952186 -57327368 - LTR67 LTR ERVL -243 314 3 186 310 86 43 chr6 131952378 131952494 -57327060 - L3b LINE CR1 -127 1456 1336 2291 92 10 7 chr6 131952969 131953273 -57326281 + AluSg SINE Alu 1 305 -5 21 36 0 0 chr6 131954164 131954192 -57325362 + AT_rich Low_complexity Low_complexity 1 28 0 252 282 252 10 chr6 131954229 131954332 -57325222 - L2 LINE L2 -3 3269 3142 250 271 14 29 chr6 131954616 131954686 -57324868 - L2 LINE L2 -16 3297 3229 590 223 152 22 chr6 131956896 131957080 -57322474 + MIR SINE MIR 55 262 0 2401 90 0 3 chr6 131957286 131957598 -57321956 - AluY SINE Alu 0 311 1 424 256 187 22 chr6 131957708 131958072 -57321482 + L2 LINE L2 1947 2370 -944 260 258 66 108 chr6 131958320 131958533 -57321021 + L2 LINE L2 2892 3095 -177 317 313 36 12 chr6 131958764 131958930 -57320624 + L1ME4a LINE L1 5941 6110 -11 2619 191 40 15 chr6 131959190 131959735 -57319819 + L1MA2 LINE L1 3699 4257 -1889 853 158 0 0 chr6 131959756 131959895 -57319659 - L1 LINE L1 -2309 3837 3699 6984 127 8 24 chr6 131959907 131961444 -57318110 + L1MA2 LINE L1 4258 5752 -552 2030 122 7 10 chr6 131961444 131961738 -57317816 + AluSx SINE Alu 1 293 -19 6984 127 8 24 chr6 131961738 131962283 -57317271 + L1MA2 LINE L1 5752 6304 0 4594 175 17 8 chr6 131962293 131963645 -57315909 + L1PB4 LINE L1 4735 6101 -55 21 0 0 0 chr6 131963655 131963676 -57315878 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 131964184 131964215 -57315339 + AT_rich Low_complexity Low_complexity 1 31 0 528 203 41 8 chr6 131964694 131964817 -57314737 + 7SK RNA RNA 2 128 -65 2235 58 0 89 chr6 131965253 131965578 -57313976 - AluY SINE Alu -14 297 2 572 205 41 8 chr6 131966778 131966900 -57312654 + 7SK RNA RNA 3 128 -65 192 362 0 0 chr6 131967091 131967149 -57312405 - MIR SINE MIR -106 102 45 240 314 43 0 chr6 131967279 131967349 -57312205 - L2 LINE L2 0 3272 3200 741 321 88 25 chr6 131968680 131969156 -57310398 - L2 LINE L2 -241 3072 2560 1133 196 140 4 chr6 131969794 131970029 -57309525 + Tigger7 DNA MER2_type 1 267 -2220 1784 114 124 59 chr6 131970058 131970479 -57309075 + MSTA LTR MaLR 1 428 0 403 191 0 0 chr6 131970479 131970542 -57309012 + Tigger7 DNA MER2_type 2415 2477 -10 225 269 0 60 chr6 131970610 131970677 -57308877 + polypurine Low_complexity Low_complexity 3 65 0 25 0 0 0 chr6 131972775 131972800 -57306754 + AT_rich Low_complexity Low_complexity 1 25 0 294 305 0 0 chr6 131974485 131974649 -57304905 + (CA)n Simple_repeat Simple_repeat 1 164 0 403 308 112 12 chr6 131975210 131975379 -57304175 + MIR3 SINE MIR 18 203 -5 201 74 0 0 chr6 131975629 131975656 -57303898 + (TAA)n Simple_repeat Simple_repeat 1 27 0 3873 59 12 0 chr6 131975709 131976214 -57303340 - L1PA8 LINE L1 -4 6168 5658 241 283 0 0 chr6 131976495 131976555 -57302999 + (TA)n Simple_repeat Simple_repeat 2 61 0 455 274 160 11 chr6 131976715 131976890 -57302664 + MIR SINE MIR 38 238 -24 1948 145 3 26 chr6 131978611 131978914 -57300640 + AluSx SINE Alu 1 296 -16 225 330 57 11 chr6 131978914 131979002 -57300552 - MIR3 SINE MIR -26 182 91 2706 269 152 46 chr6 131979480 131981736 -57297818 + HAL1 LINE L1 9 2502 -5 219 273 45 0 chr6 131981846 131981912 -57297642 - L2 LINE L2 -7 3306 3238 513 279 33 16 chr6 131981979 131982162 -57297392 - L2 LINE L2 -914 2400 2215 352 245 47 70 chr6 131983988 131984221 -57295333 + MLT1J LTR MaLR 109 416 -195 1600 172 107 0 chr6 131984571 131984879 -57294675 + MER58B DNA MER1_type 1 341 0 582 246 0 0 chr6 131986403 131986529 -57293025 + MER94 DNA DNA 8 133 -1 180 0 0 0 chr6 131987158 131987178 -57292376 + (T)n Simple_repeat Simple_repeat 1 20 0 278 294 22 0 chr6 131987227 131987319 -57292235 + L1ME4a LINE L1 5959 6052 -69 35 0 0 0 chr6 131987338 131987373 -57292181 + AT_rich Low_complexity Low_complexity 1 35 0 243 266 53 0 chr6 131988861 131988955 -57290599 + MER94 DNA DNA 1 99 -35 235 227 125 45 chr6 131989873 131989961 -57289593 - MER63 DNA MER1_type -84 752 32 887 201 4 92 chr6 131990200 131990429 -57289125 + MER58C DNA MER1_type 1 209 -6 188 371 32 32 chr6 131990783 131990907 -57288647 - L2 LINE L2 -491 2823 2700 235 329 146 32 chr6 131990946 131991192 -57288362 - L2 LINE L2 -705 2609 2336 324 0 0 0 chr6 131991420 131991456 -57288098 + (TA)n Simple_repeat Simple_repeat 1 36 0 461 243 20 53 chr6 131992833 131992984 -57286570 - MIR SINE MIR -18 244 100 1712 221 89 7 chr6 131993009 131993434 -57286120 + MLT1C LTR MaLR 6 465 -2 22766 130 8 9 chr6 131994887 131996104 -57283450 + L1PA8A LINE L1 3 1219 -5227 186 118 0 0 chr6 131996104 131996138 -57283416 + (CAA)n Simple_repeat Simple_repeat 3 36 0 22766 130 8 9 chr6 131996138 132001307 -57278247 + L1PA8A LINE L1 1219 6446 0 4031 100 2 9 chr6 132001485 132002066 -57277488 - L1PA10 LINE L1 0 6168 5592 181 403 0 0 chr6 132003243 132003305 -57276249 - MIR SINE MIR -164 98 37 1348 138 60 0 chr6 132004430 132004647 -57274907 - MER30 DNA MER1_type 0 230 1 195 222 63 63 chr6 132004662 132004725 -57274829 - MIR3 SINE MIR -46 162 100 229 278 122 11 chr6 132005265 132005355 -57274199 + MIR3 SINE MIR 107 206 -2 24 0 0 0 chr6 132007970 132007994 -57271560 + AT_rich Low_complexity Low_complexity 1 24 0 617 181 79 73 chr6 132008286 132008463 -57271091 - MER5B DNA MER1_type 0 178 1 383 250 54 0 chr6 132008822 132008914 -57270640 - L2 LINE L2 -4 3268 3172 240 321 37 9 chr6 132010125 132010234 -57269320 + MER91C DNA MER1_type 4 115 -25 267 323 73 101 chr6 132010527 132010895 -57268659 + L2 LINE L2 2905 3262 -10 211 186 0 47 chr6 132011101 132011144 -57268410 + MIR SINE MIR 222 262 0 2278 154 17 7 chr6 132011913 132012322 -57267232 - L1MC1 LINE L1 -9 6324 5912 9096 188 33 20 chr6 132012325 132017154 -57262400 - L1MCa LINE L1 -1430 4996 20 23 68 0 0 chr6 132017226 132017270 -57262284 + AT_rich Low_complexity Low_complexity 1 44 0 1242 88 6 0 chr6 132017412 132017582 -57261972 - AluY SINE Alu -14 297 127 21 57 0 0 chr6 132017792 132017827 -57261727 + AT_rich Low_complexity Low_complexity 1 35 0 508 300 50 17 chr6 132018647 132018827 -57260727 - MIR SINE MIR -48 214 29 1297 336 142 25 chr6 132018832 132019403 -57260151 + L3 LINE CR1 576 1291 -286 2002 141 0 7 chr6 132019403 132019694 -57259860 + AluJo SINE Alu 7 295 -17 1297 336 142 25 chr6 132019694 132020017 -57259537 + L3 LINE CR1 1291 1575 -2 1574 203 56 60 chr6 132020097 132020565 -57258989 - MER31B LTR ERV1 0 466 1 1000 185 9 56 chr6 132020794 132020945 -57258609 + MER3 DNA MER1_type 1 141 -68 2178 116 7 3 chr6 132020945 132021239 -57258315 - AluSx SINE Alu -17 295 1 1000 185 9 56 chr6 132021239 132021303 -57258251 + MER3 DNA MER1_type 141 206 -3 671 245 83 15 chr6 132021497 132021701 -57257853 + MIR SINE MIR 1 218 -44 521 319 137 39 chr6 132023497 132023797 -57255757 + L2 LINE L2 2170 2439 -875 1934 155 7 0 chr6 132023797 132024088 -57255466 - AluSx SINE Alu -19 293 1 521 319 137 39 chr6 132024088 132024489 -57255065 + L2 LINE L2 2439 2940 -374 839 251 146 0 chr6 132024613 132024832 -57254722 - MIR SINE MIR -10 252 2 234 0 0 0 chr6 132025602 132025628 -57253926 + (CA)n Simple_repeat Simple_repeat 2 27 0 348 198 81 0 chr6 132026029 132026115 -57253439 + L1MA9 LINE L1 6180 6272 -40 21 89 0 0 chr6 132026670 132026726 -57252828 + AT_rich Low_complexity Low_complexity 1 56 0 203 97 48 16 chr6 132026862 132026924 -57252630 + (TA)n Simple_repeat Simple_repeat 1 64 0 21 57 0 0 chr6 132027039 132027074 -57252480 + AT_rich Low_complexity Low_complexity 1 35 0 321 67 0 33 chr6 132027321 132027381 -57252173 + L1MA4 LINE L1 6238 6295 -5 190 258 0 79 chr6 132027707 132027796 -57251758 - L3b LINE CR1 -400 1183 1102 596 306 15 24 chr6 132028299 132028505 -57251049 - L3b LINE CR1 -92 1491 1288 290 304 76 19 chr6 132029114 132029272 -57250282 + L2 LINE L2 3134 3300 -13 197 261 43 14 chr6 132029594 132029663 -57249891 - MIR SINE MIR -7 255 185 309 316 128 27 chr6 132029675 132029897 -57249657 + MIR SINE MIR 6 248 -14 1797 164 7 3 chr6 132031845 132032137 -57247417 - AluSx SINE Alu -15 297 5 303 243 136 19 chr6 132032987 132033090 -57246464 + MIR SINE MIR 43 157 -105 248 308 108 42 chr6 132033734 132033854 -57245700 + L3b LINE CR1 1189 1316 -267 622 202 0 39 chr6 132033859 132033988 -57245566 + Charlie5 DNA MER1_type 1 124 -2488 1447 175 53 11 chr6 132034025 132034385 -57245169 + Charlie5 DNA MER1_type 2250 2624 0 1762 34 10 5 chr6 132034706 132034915 -57244639 + AluY SINE Alu 87 296 -15 471 268 0 0 chr6 132035190 132035369 -57244185 + (TA)n Simple_repeat Simple_repeat 2 180 0 219 297 0 0 chr6 132035371 132035435 -57244119 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 315 333 96 15 chr6 132035702 132035837 -57243717 + MIR3 SINE MIR 60 205 -3 899 262 54 54 chr6 132035901 132036404 -57243150 + L1ME2 LINE L1 1890 2392 -4004 * 5611 144 70 10 chr6 132036388 132037363 -57242191 + L1PB1 LINE L1 3 1035 -5828 1995 194 5 0 chr6 132037364 132037765 -57241789 + L1PB1 LINE L1 4643 5045 -1817 4568 144 58 20 chr6 132037766 132038558 -57240996 - LTR12 LTR ERV1 0 826 5 2484 192 37 25 chr6 132038574 132039168 -57240386 - pTR5 LTR ERV1 -1094 1344 744 4868 150 25 3 chr6 132039168 132040124 -57239430 + L1PB1 LINE L1 5042 6858 -9 4868 76 15 0 chr6 132040124 132040778 -57238776 + L1PB1 LINE L1 6203 6867 0 4868 150 25 3 chr6 132040778 132040789 -57238765 + L1PB1 LINE L1 6858 6867 0 644 126 71 16 chr6 132040791 132040918 -57238636 + L1PA15 LINE L1 6023 6156 -9 720 201 123 11 chr6 132040938 132041206 -57238348 + L1ME2 LINE L1 2316 2613 -3602 * 888 259 54 0 chr6 132041204 132041850 -57237704 + L1ME2 LINE L1 3025 3734 -2481 * 3345 220 64 26 chr6 132041845 132042458 -57237096 + L1ME2 LINE L1 4310 4898 -1335 2181 103 0 0 chr6 132042458 132042739 -57236815 - AluSq SINE Alu -32 281 1 3345 220 64 26 chr6 132042739 132043908 -57235646 + L1ME2 LINE L1 4898 6232 -1 21 0 0 0 chr6 132043916 132043937 -57235617 + AT_rich Low_complexity Low_complexity 1 21 0 227 286 0 0 chr6 132044257 132044313 -57235241 + L2 LINE L2 3217 3272 0 500 245 9 0 chr6 132044740 132044846 -57234708 + MER5A DNA MER1_type 1 107 -82 286 260 49 32 chr6 132044848 132044937 -57234617 + MLT1K LTR MaLR 447 540 -48 714 213 47 12 chr6 132044937 132045106 -57234448 + MER5B DNA MER1_type 3 177 -1 286 260 49 32 chr6 132045106 132045139 -57234415 + MLT1K LTR MaLR 540 571 -17 4255 107 0 19 chr6 132046564 132047207 -57232347 - L1PB3 LINE L1 -1 6153 5523 434 271 33 33 chr6 132048069 132048220 -57231334 - MIR SINE MIR -20 242 92 441 214 54 27 chr6 132048933 132049045 -57230509 - L2 LINE L2 0 3313 3199 327 275 99 55 chr6 132049238 132049420 -57230134 - MIR SINE MIR -8 254 65 459 182 36 9 chr6 132049658 132049768 -57229786 + L1MB7 LINE L1 6071 6183 -1 1447 286 57 14 chr6 132049991 132050480 -57229074 + LTR33 LTR ERVL 1 510 -11 1510 116 163 8 chr6 132050601 132050859 -57228695 + AluSg SINE Alu 1 298 -2 325 250 0 20 chr6 132050864 132050964 -57228590 - MER113 DNA MER1_type? -410 111 14 455 313 73 11 chr6 132051391 132051570 -57227984 - MIR SINE MIR -17 245 56 292 315 170 0 chr6 132051704 132051869 -57227685 - L3b LINE CR1 -66 1517 1325 805 255 35 59 chr6 132053797 132053842 -57225712 - MIR SINE MIR 0 262 217 1143 179 31 31 chr6 132053842 132054066 -57225488 + MER58A DNA MER1_type 1 224 0 805 255 35 59 chr6 132054066 132054275 -57225279 - MIR SINE MIR -45 217 14 208 194 0 0 chr6 132054416 132054452 -57225102 + L2 LINE L2 3221 3256 -16 1839 160 7 7 chr6 132055461 132055755 -57223799 - AluJb SINE Alu -18 294 1 212 323 0 31 chr6 132056698 132056825 -57222729 + GA-rich Low_complexity Low_complexity 5 127 0 558 318 90 9 chr6 132057054 132057277 -57222277 + MIR SINE MIR 22 262 0 237 362 29 0 chr6 132057884 132057989 -57221565 - MIR SINE MIR -67 195 88 211 146 49 0 chr6 132058249 132058290 -57221264 - MIR SINE MIR -133 75 33 205 293 69 0 chr6 132058704 132058762 -57220792 - L2 LINE L2 -4 3268 3207 37 81 0 0 chr6 132059744 132059830 -57219724 + AT_rich Low_complexity Low_complexity 1 86 0 27 29 0 0 chr6 132061136 132061170 -57218384 + AT_rich Low_complexity Low_complexity 1 34 0 2057 149 0 3 chr6 132063724 132064026 -57215528 + AluSx SINE Alu 1 301 -11 2214 94 7 3 chr6 132064028 132064314 -57215240 + AluSc SINE Alu 8 294 -15 384 364 17 64 chr6 132065139 132065436 -57214118 + L2 LINE L2 2606 2888 -426 1669 308 82 21 chr6 132065946 132066772 -57212782 + L2 LINE L2 1973 2849 -465 441 261 164 15 chr6 132066932 132067066 -57212488 + L2 LINE L2 3159 3312 -1 24 32 0 0 chr6 132067088 132067119 -57212435 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr6 132067132 132067153 -57212401 + (A)n Simple_repeat Simple_repeat 1 21 0 1107 259 48 90 chr6 132067241 132067934 -57211620 + L2 LINE L2 2531 3188 -125 2226 116 3 3 chr6 132067934 132068244 -57211310 + AluSx SINE Alu 1 310 -2 1107 259 48 90 chr6 132068244 132068362 -57211192 + L2 LINE L2 3188 3309 -4 2232 50 53 0 chr6 132069283 132069564 -57209990 + AluY SINE Alu 1 296 -15 682 282 87 17 chr6 132071090 132071331 -57208223 + MIR SINE MIR 2 259 -3 767 174 61 0 chr6 132071332 132071464 -57208090 + FRAM SINE Alu 1 137 -39 192 40 0 0 chr6 132071464 132071489 -57208065 + (TC)n Simple_repeat Simple_repeat 1 25 0 200 241 13 0 chr6 132071489 132071568 -57207986 + (TA)n Simple_repeat Simple_repeat 2 81 0 1088 212 52 52 chr6 132071939 132072246 -57207308 - MER119 DNA MER1_type -1 582 276 7554 30 0 2 chr6 132072960 132074555 -57204999 + L1PA4 LINE L1 4557 6152 -3 596 238 65 65 chr6 132075189 132075297 -57204257 + MER112 DNA MER1_type 11 118 -142 723 149 34 14 chr6 132075297 132075445 -57204109 - L1MB8 LINE L1 -1 6177 6027 596 238 65 65 chr6 132075445 132075584 -57203970 + MER112 DNA MER1_type 117 258 -2 372 125 0 0 chr6 132076540 132076604 -57202950 + (TC)n Simple_repeat Simple_repeat 1 64 0 627 299 152 34 chr6 132077056 132077570 -57201984 - L2 LINE L2 0 3313 2731 186 103 0 0 chr6 132077618 132077647 -57201907 + (TA)n Simple_repeat Simple_repeat 1 29 0 501 47 0 0 chr6 132077899 132077963 -57201591 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 607 221 16 8 chr6 132078598 132078725 -57200829 - FLAM_A SINE Alu -5 128 1 1985 148 17 0 chr6 132079028 132079397 -57200157 + AluSx SINE Alu 1 374 0 485 304 19 13 chr6 132080324 132080482 -57199072 - L2 LINE L2 0 3313 3155 267 287 119 10 chr6 132080881 132080982 -57198572 - MIR SINE MIR -91 171 60 622 195 201 0 chr6 132081118 132081267 -57198287 + MER5A DNA MER1_type 4 182 -7 706 303 148 39 chr6 132082156 132082954 -57196600 + L2 LINE L2 1946 2830 -484 267 287 50 59 chr6 132083335 132083436 -57196118 + L2 LINE L2 3214 3313 0 289 331 105 0 chr6 132083453 132083577 -57195977 - MIR3 SINE MIR -5 203 67 284 309 11 43 chr6 132084519 132084613 -57194941 + L2 LINE L2 3182 3272 0 742 230 164 9 chr6 132085314 132085527 -57194027 - MIR SINE MIR -1 261 16 1255 33 0 0 chr6 132085753 132085950 -57193604 + L1PA4 LINE L1 5987 6183 0 264 312 101 5 chr6 132086292 132086491 -57193063 - L1MC/D LINE L1 -2232 5576 5359 228 204 48 10 chr6 132086492 132086595 -57192959 + (TA)n Simple_repeat Simple_repeat 1 107 0 2813 85 10 19 chr6 132086595 132087006 -57192548 - L1PB3 LINE L1 -6 6148 5742 1700 158 39 3 chr6 132087348 132087633 -57191921 - AluJb SINE Alu -11 301 7 23 92 0 0 chr6 132087852 132087917 -57191637 + AT_rich Low_complexity Low_complexity 1 65 0 1734 112 11 14 chr6 132088372 132088648 -57190906 + L1PB1 LINE L1 5876 6150 -1 235 239 0 0 chr6 132088685 132088731 -57190823 + MER103 DNA DNA 76 121 -45 407 276 23 35 chr6 132089446 132089620 -57189934 + L1ME4a LINE L1 5729 5900 -221 204 97 0 0 chr6 132089629 132089660 -57189894 + (TA)n Simple_repeat Simple_repeat 1 31 0 23 92 0 0 chr6 132089744 132089809 -57189745 + AT_rich Low_complexity Low_complexity 1 65 0 195 42 0 0 chr6 132091768 132091792 -57187762 + (TC)n Simple_repeat Simple_repeat 2 25 0 2141 87 0 4 chr6 132091792 132092067 -57187487 - AluSc SINE Alu -28 281 8 15688 152 31 15 chr6 132092221 132095767 -57183787 - L1MA1 LINE L1 0 7721 4091 1887 81 0 0 chr6 132095767 132096001 -57183553 + AluY SINE Alu 1 234 -77 15688 152 31 15 chr6 132096001 132096772 -57182782 - L1MA1 LINE L1 -3630 4091 3334 2211 115 3 0 chr6 132097381 132097676 -57181878 + AluSq SINE Alu 1 296 -17 2366 87 3 0 chr6 132098547 132098846 -57180708 - AluSx SINE Alu -12 300 1 22 56 0 0 chr6 132099025 132099061 -57180493 + AT_rich Low_complexity Low_complexity 1 36 0 6533 134 36 9 chr6 132099718 132101818 -57177736 - L1MA5A LINE L1 -3 6294 4134 24 32 0 0 chr6 132102193 132102224 -57177330 + AT_rich Low_complexity Low_complexity 1 31 0 519 150 170 0 chr6 132102601 132102701 -57176853 + AluJb SINE Alu 176 292 -20 371 172 251 49 chr6 132102705 132102768 -57176786 + L1ME4a LINE L1 5826 5875 -246 6781 135 45 11 chr6 132102768 132103959 -57175595 + Tigger3b DNA MER2_type 1 1231 0 371 172 251 49 chr6 132103959 132104058 -57175496 + L1ME4a LINE L1 5875 6021 -100 2499 51 0 0 chr6 132105468 132105760 -57173794 + AluY SINE Alu 1 292 -19 743 235 44 78 chr6 132106008 132106420 -57173134 - MER93a LTR ERV1 -4 398 1 457 303 65 0 chr6 132106437 132106592 -57172962 + MIR SINE MIR 10 174 -88 505 300 69 17 chr6 132106713 132106946 -57172608 - L2 LINE L2 -8 3305 3061 2166 97 72 29 chr6 132107687 132108036 -57171518 - THE1B LTR MaLR 0 364 1 542 362 60 4 chr6 132108178 132108413 -57171141 - MIR SINE MIR -13 249 2 22 0 0 0 chr6 132108748 132108770 -57170784 + AT_rich Low_complexity Low_complexity 1 22 0 475 161 64 11 chr6 132108852 132109018 -57170536 + MER33 DNA MER1_type 1 253 -110 21 0 0 0 chr6 132109019 132109040 -57170514 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr6 132109565 132109597 -57169957 + AT_rich Low_complexity Low_complexity 1 32 0 2335 52 0 17 chr6 132110596 132110887 -57168667 + AluY SINE Alu 12 297 -14 1921 159 0 10 chr6 132111429 132111730 -57167824 + AluJo SINE Alu 1 298 -14 234 0 0 0 chr6 132111819 132111845 -57167709 + (TG)n Simple_repeat Simple_repeat 2 27 0 1762 185 0 7 chr6 132112743 132113045 -57166509 + AluJb SINE Alu 3 302 -10 237 284 40 0 chr6 132113685 132113759 -57165795 - MIR SINE MIR -69 193 117 2613 143 36 6 chr6 132114034 132114511 -57165043 - L1MB7 LINE L1 0 6184 5694 316 245 106 0 chr6 132114652 132114746 -57164808 - MER81 DNA DNA -10 104 1 1680 184 7 7 chr6 132115022 132115331 -57164223 + AluJb SINE Alu 1 309 -3 1923 134 7 42 chr6 132117905 132118211 -57161343 - AluJb SINE Alu -16 296 2 33 0 0 0 chr6 132118311 132118344 -57161210 + AT_rich Low_complexity Low_complexity 1 33 0 1851 167 0 0 chr6 132118345 132118627 -57160927 - AluJo SINE Alu -29 283 2 469 236 71 8 chr6 132119014 132119141 -57160413 + MIR3 SINE MIR 68 202 -6 948 146 7 0 chr6 132119533 132119670 -57159884 + AluJo SINE Alu 1 138 -174 1535 179 90 4 chr6 132119670 132119949 -57159605 + AluJo SINE Alu 3 305 -7 250 302 87 34 chr6 132119973 132120122 -57159432 - MIR SINE MIR -32 230 74 351 96 0 0 chr6 132120430 132120482 -57159072 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 24 0 0 0 chr6 132122017 132122041 -57157513 + AT_rich Low_complexity Low_complexity 1 24 0 738 92 9 28 chr6 132123062 132123171 -57156383 - U6 snRNA snRNA 0 107 1 352 360 41 15 chr6 132123472 132123669 -57155885 - L1ME2 LINE L1 -218 5946 5745 471 294 63 19 chr6 132123737 132124006 -57155548 - L1ME2 LINE L1 -2210 5598 5318 4407 190 26 20 chr6 132124847 132126102 -57153452 - L1MD1 LINE L1 -11 6625 5362 180 0 0 0 chr6 132126118 132126138 -57153416 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 565 195 8 0 chr6 132126147 132126270 -57153284 + L1M4 LINE L1 2707 2830 -3316 3282 236 19 60 chr6 132126271 132126374 -57153180 + L1M4 LINE L1 3067 3173 -2973 2311 113 0 0 chr6 132126374 132126676 -57152878 + AluSq SINE Alu 1 302 -11 3282 236 19 60 chr6 132126676 132127722 -57151832 + L1M4 LINE L1 3173 4164 -1982 180 0 0 0 chr6 132127722 132127742 -57151812 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 3282 236 19 60 chr6 132127742 132127835 -57151719 + L1M4 LINE L1 4164 4259 -1887 1548 223 26 17 chr6 132127853 132128342 -57151212 - L1MD1 LINE L1 -3444 3096 2605 1048 194 75 30 chr6 132128346 132128681 -57150873 - L1MD1 LINE L1 -4021 2519 2170 1570 113 73 29 chr6 132128699 132128905 -57150649 + MER7A DNA MER2_type 63 283 -2755 1768 150 60 41 chr6 132128905 132129271 -57150283 - THE1C LTR MaLR -2 373 1 1570 113 73 29 chr6 132129271 132129338 -57150216 + MER7A DNA MER2_type 283 346 0 2203 210 85 27 chr6 132129339 132130008 -57149546 - L1MD1 LINE L1 -5500 1040 17 945 163 19 12 chr6 132131203 132131363 -57148191 + AluJb SINE Alu 144 304 -8 627 161 42 21 chr6 132131895 132132038 -57147516 - L1MC1 LINE L1 0 6333 6188 354 269 62 23 chr6 132132337 132132467 -57147087 - MIR3 SINE MIR -54 154 20 1151 143 117 3 chr6 132133204 132133616 -57145938 - MER21A LTR ERV1 -383 480 1 3369 90 6 0 chr6 132133653 132134119 -57145435 - L1PB1 LINE L1 -2 6149 5681 11931 161 38 13 chr6 132134128 132136370 -57143184 - MER41B-int LTR ERV1 -54 4137 1841 733 130 29 29 chr6 132136345 132136483 -57143071 - MER41B-int LTR ERV1 -2927 3831 3694 * 7832 188 39 35 chr6 132136505 132136662 -57142892 - MER41B-int LTR ERV1 -2370 1821 1666 2601 64 0 0 chr6 132136662 132136973 -57142581 - AluY SINE Alu 0 311 1 7832 188 39 35 chr6 132136973 132138503 -57141051 - MER41B-int LTR ERV1 -2525 1666 129 3785 147 11 14 chr6 132138505 132139140 -57140414 - MER41B LTR ERV1 -2 633 1 15954 100 37 16 chr6 132139140 132139819 -57139735 - MER41B-int LTR ERV1 0 5946 5283 1879 56 0 0 chr6 132139819 132140053 -57139501 + L1PA5 LINE L1 5914 6147 -7 15954 100 37 16 chr6 132140053 132141345 -57138209 - MER41B-int LTR ERV1 -663 5283 3904 2343 79 3 0 chr6 132141345 132141636 -57137918 - AluSq SINE Alu -21 292 1 15954 100 37 16 chr6 132141636 132142255 -57137299 - MER41B-int LTR ERV1 -2042 3904 3300 4454 130 72 23 chr6 132142243 132143064 -57136490 - MER57-int LTR ERV1 -3900 3637 2777 * 918 136 6 28 chr6 132143056 132143232 -57136322 - MER57-int LTR ERV1 -3929 2017 1846 * 1325 109 75 0 chr6 132143220 132143421 -57136133 - MER57-int LTR ERV1 -4339 1607 1392 340 83 48 143 chr6 132143422 132143506 -57136048 - MER57-int LTR ERV1 -5256 690 615 1514 196 79 8 chr6 132143933 132144311 -57135243 + MER31B LTR ERV1 1 405 -61 2279 113 0 13 chr6 132144432 132144741 -57134813 - AluSq SINE Alu -8 305 1 195 289 72 24 chr6 132144843 132144926 -57134628 + L2 LINE L2 3027 3113 -159 414 98 0 0 chr6 132145075 132145136 -57134418 - MSTA LTR MaLR -367 61 1 21 0 0 0 chr6 132145330 132145351 -57134203 + AT_rich Low_complexity Low_complexity 1 21 0 787 161 36 0 chr6 132145683 132145820 -57133734 + FAM SINE Alu 22 163 -22 186 189 0 0 chr6 132145822 132145859 -57133695 + (CATA)n Simple_repeat Simple_repeat 2 38 0 228 111 0 0 chr6 132147503 132147539 -57132015 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 192 40 0 0 chr6 132147908 132147933 -57131621 + (CGGGG)n Simple_repeat Simple_repeat 2 26 0 361 259 136 91 chr6 132147941 132148413 -57131141 - L1M2 LINE L1 -5522 1327 835 22 0 0 0 chr6 132149439 132149461 -57130093 + AT_rich Low_complexity Low_complexity 1 22 0 1912 133 0 0 chr6 132149690 132149960 -57129594 - AluJb SINE Alu -25 287 18 221 351 22 67 chr6 132150200 132150334 -57129220 - MER91A DNA MER1_type -1 195 68 217 292 69 14 chr6 132150915 132150987 -57128567 + L2 LINE L2 3151 3226 -46 947 269 75 54 chr6 132151810 132152107 -57127447 + L2 LINE L2 2817 3125 -188 1971 152 6 23 chr6 132152107 132152450 -57127104 + MER1B DNA MER1_type 1 337 0 947 269 75 54 chr6 132152450 132152539 -57127015 + L2 LINE L2 3125 3211 -102 1312 169 17 9 chr6 132152682 132152913 -57126641 + AluJb SINE Alu 11 243 -69 645 71 184 106 chr6 132152926 132153067 -57126487 + MSTA LTR MaLR 277 428 0 1111 222 15 41 chr6 132153067 132153337 -57126217 + AluJo SINE Alu 43 305 -7 1072 206 39 0 chr6 132153354 132153558 -57125996 - Charlie1a DNA MER1_type -1207 248 37 38 0 0 0 chr6 132153669 132153707 -57125847 + AT_rich Low_complexity Low_complexity 1 38 0 522 172 11 11 chr6 132153723 132153816 -57125738 - FLAM_A SINE Alu -18 124 32 319 206 122 37 chr6 132153829 132153936 -57125618 + MIR SINE MIR 74 189 -73 2316 64 0 4 chr6 132154453 132154733 -57124821 + AluY SINE Alu 29 307 -4 330 260 146 0 chr6 132155597 132155693 -57123861 + MIR SINE MIR 42 151 -57 3283 184 52 24 chr6 132156042 132156119 -57123435 + MER21B LTR ERV1 209 282 -581 2043 181 59 17 chr6 132156119 132156528 -57123026 - MSTB LTR MaLR 0 426 1 3283 184 52 24 chr6 132156528 132157087 -57122467 + MER21B LTR ERV1 282 863 0 338 254 55 0 chr6 132157775 132157885 -57121669 + L1ME3A LINE L1 5141 5256 -890 2319 154 174 158 chr6 132157890 132158894 -57120660 - LTR28 LTR ERV1 0 1020 1 333 0 0 0 chr6 132158895 132158932 -57120622 + (TG)n Simple_repeat Simple_repeat 2 38 0 206 114 0 45 chr6 132158932 132158976 -57120578 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 1741 261 69 50 chr6 132158976 132159773 -57119781 + L1ME3A LINE L1 5274 6085 -85 302 194 183 0 chr6 132159836 132159929 -57119625 + L1MC4a LINE L1 5812 5921 -1887 660 164 22 0 chr6 132160469 132160603 -57118951 + L1MB7 LINE L1 6048 6184 0 199 269 13 77 chr6 132160918 132160996 -57118558 - L2 LINE L2 0 3313 3241 797 237 169 70 chr6 132162594 132163049 -57116505 - MLT1J LTR MaLR 0 511 12 2395 97 0 0 chr6 132166098 132166407 -57113147 - AluSg SINE Alu -1 309 1 998 177 94 15 chr6 132166932 132167135 -57112419 - AluJb SINE Alu -10 302 84 777 329 118 55 chr6 132168611 132169823 -57109731 - L2 LINE L2 -472 2842 1555 21 36 0 0 chr6 132170438 132170466 -57109088 + AT_rich Low_complexity Low_complexity 1 28 0 284 240 0 0 chr6 132171081 132171156 -57108398 + HsTC2 DNA Tc2 1 75 -1823 484 244 134 0 chr6 132171829 132171956 -57107598 + MIR SINE MIR 86 229 -33 392 384 41 0 chr6 132172037 132172183 -57107371 - MIR3 SINE MIR -9 199 48 574 262 165 21 chr6 132172315 132172552 -57107002 - L3 LINE CR1 -2 1575 1305 1853 148 3 33 chr6 132172991 132173296 -57106258 - AluJb SINE Alu -15 297 2 21 36 0 0 chr6 132173524 132173552 -57106002 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr6 132174365 132174410 -57105144 + AT_rich Low_complexity Low_complexity 1 45 0 6153 173 76 24 chr6 132174873 132176256 -57103298 + Charlie1a DNA MER1_type 1 1455 0 1896 147 17 10 chr6 132176940 132177240 -57102314 + AluJb SINE Alu 11 312 0 2137 132 0 13 chr6 132177456 132177766 -57101788 - AluSx SINE Alu -6 306 1 955 266 99 42 chr6 132181602 132182034 -57097520 + LTR16B LTR ERVL 8 464 0 2544 214 45 8 chr6 132182183 132182715 -57096839 + MER68 LTR ERV1 1 552 -10 665 316 123 35 chr6 132182930 132183417 -57096137 + HERV16 LTR ERVL 393 922 -4074 2111 96 34 3 chr6 132183420 132183713 -57095841 - AluSq SINE Alu -9 304 3 346 281 58 6 chr6 132183803 132183974 -57095580 + L1M4 LINE L1 2210 2389 -3757 5398 97 27 13 chr6 132184156 132184984 -57094570 + L1PB4 LINE L1 5316 6154 -2 300 284 23 34 chr6 132185199 132185287 -57094267 - MIR SINE MIR -85 123 37 691 308 129 39 chr6 132185828 132186298 -57093256 + L1M4 LINE L1 3188 3614 -2532 2391 78 0 0 chr6 132186298 132186593 -57092961 - AluSc SINE Alu -14 295 1 691 308 129 39 chr6 132186593 132187101 -57092453 + L1M4 LINE L1 3614 4305 -1841 936 234 88 4 chr6 132187133 132187372 -57092182 - MIR SINE MIR -1 261 3 320 331 14 7 chr6 132187405 132187544 -57092010 + L1M4 LINE L1 4383 4522 -1624 1407 184 44 7 chr6 132189087 132189358 -57090196 - AluJo SINE Alu -31 281 1 2225 75 0 0 chr6 132189527 132189841 -57089713 + AluY SINE Alu 1 314 0 277 256 196 0 chr6 132189865 132189998 -57089556 + L1MEd LINE L1 1094 1252 -4867 228 234 0 0 chr6 132192637 132192684 -57086870 + (CA)n Simple_repeat Simple_repeat 1 47 0 628 222 168 0 chr6 132193775 132193978 -57085576 - MIR SINE MIR -12 250 14 220 250 0 0 chr6 132194791 132194847 -57084707 - MER5A DNA MER1_type -119 70 15 869 203 95 46 chr6 132194870 132195175 -57084379 + MER5C DNA MER1_type 1 320 -4 418 230 20 10 chr6 132196724 132196824 -57082730 + MIR SINE MIR 116 216 -46 218 292 67 22 chr6 132197280 132197369 -57082185 - MIR3 SINE MIR -16 192 100 1455 162 104 0 chr6 132197550 132197809 -57081745 + AluJo SINE Alu 5 290 -22 2150 102 7 10 chr6 132198888 132199193 -57080361 - AluSx SINE Alu -6 306 3 719 251 94 38 chr6 132199195 132199589 -57079965 + L1ME4a LINE L1 5704 6119 -2 434 275 25 85 chr6 132199735 132200051 -57079503 - L1MC4a LINE L1 -1847 5961 5665 2384 104 0 0 chr6 132201108 132201417 -57078137 - AluSq SINE Alu -4 309 1 1507 193 60 18 chr6 132201437 132201722 -57077832 - AluJo SINE Alu -15 297 1 22 0 0 0 chr6 132203296 132203318 -57076236 + AT_rich Low_complexity Low_complexity 1 22 0 660 124 0 19 chr6 132203436 132203541 -57076013 + FLAM_A SINE Alu 40 142 0 2505 45 0 0 chr6 132203655 132203944 -57075610 - AluY SINE Alu -13 298 10 407 295 34 80 chr6 132204085 132204322 -57075232 - MIR SINE MIR -29 233 8 293 234 136 18 chr6 132205242 132205354 -57074200 - MIR SINE MIR -64 144 39 43 35 0 0 chr6 132206411 132206468 -57073086 + AT_rich Low_complexity Low_complexity 1 57 0 522 235 42 37 chr6 132209157 132209374 -57070180 + MLT1H1 LTR MaLR 331 548 -7 287 261 33 98 chr6 132210523 132210634 -57068920 + MIR3 SINE MIR 60 160 -48 2112 155 6 3 chr6 132210634 132210970 -57068584 + MER1B DNA MER1_type 1 337 0 287 261 33 98 chr6 132210970 132211011 -57068543 + MIR3 SINE MIR 160 202 -6 25 0 0 0 chr6 132211327 132211352 -57068202 + AT_rich Low_complexity Low_complexity 1 25 0 284 89 0 0 chr6 132211372 132211417 -57068137 + MADE1 DNA Mariner 2 46 -34 31 0 0 0 chr6 132211841 132211872 -57067682 + AT_rich Low_complexity Low_complexity 1 31 0 2369 88 3 0 chr6 132212067 132212364 -57067190 + AluY SINE Alu 1 298 -13 265 207 61 0 chr6 132212974 132213056 -57066498 - L1ME4a LINE L1 -68 6053 5967 980 236 133 76 chr6 132213358 132213846 -57065708 - L3 LINE CR1 0 1577 1062 2633 190 61 26 chr6 132213853 132214426 -57065128 + MLT1E LTR MaLR 1 593 0 31 0 0 0 chr6 132215854 132215885 -57063669 + AT_rich Low_complexity Low_complexity 1 31 0 1199 183 53 7 chr6 132216326 132216627 -57062927 - MER33 DNA MER1_type -1 323 9 2261 92 0 13 chr6 132216702 132217005 -57062549 + AluSq SINE Alu 1 299 -14 553 280 65 60 chr6 132217585 132217921 -57061633 - MER46C DNA MER2_type 0 338 1 246 332 118 32 chr6 132218284 132218471 -57061083 + MIR SINE MIR 40 242 -20 1615 183 67 3 chr6 132218482 132218767 -57060787 + AluJo SINE Alu 1 303 -9 1096 167 101 0 chr6 132218811 132219009 -57060545 + MER20 DNA MER1_type 2 219 0 1057 189 9 47 chr6 132219246 132219479 -57060075 + MER58A DNA MER1_type 1 224 0 1366 92 74 18 chr6 132220861 132221078 -57058476 - MER30 DNA MER1_type -1 229 1 2077 122 82 20 chr6 132222349 132222692 -57056862 + THE1B LTR MaLR 1 364 0 11702 80 23 1 chr6 132222694 132224239 -57055315 + THE1B-int LTR MaLR 2 1580 0 2084 107 101 21 chr6 132224239 132224576 -57054978 + THE1B LTR MaLR 1 364 0 279 213 0 75 chr6 132224812 132224828 -57054726 + MIR SINE MIR 184 200 -62 2336 78 3 26 chr6 132224828 132225134 -57054420 - AluY SINE Alu -12 299 1 279 213 0 75 chr6 132225134 132225197 -57054357 + MIR SINE MIR 200 257 -5 229 308 83 25 chr6 132225227 132225347 -57054207 + L2 LINE L2 3138 3264 -8 2227 106 0 13 chr6 132225884 132226185 -57053369 + AluSg SINE Alu 1 297 -13 1721 164 52 11 chr6 132226597 132226884 -57052670 - AluJo SINE Alu -13 299 1 558 231 65 87 chr6 132230106 132230335 -57049219 + MIR SINE MIR 20 243 -19 372 71 0 0 chr6 132230823 132230879 -57048675 + (TG)n Simple_repeat Simple_repeat 2 57 0 302 309 0 0 chr6 132231562 132231643 -57047911 + G-rich Low_complexity Low_complexity 1 81 0 573 225 46 157 chr6 132231646 132231756 -57047798 - MIR SINE MIR 0 262 141 1716 210 3 0 chr6 132231756 132232056 -57047498 - AluJb SINE Alu -11 301 1 573 225 46 157 chr6 132232056 132232225 -57047329 - MIR SINE MIR -121 141 14 28 48 0 0 chr6 132232712 132232754 -57046800 + AT_rich Low_complexity Low_complexity 1 42 0 459 214 26 26 chr6 132233370 132233487 -57046067 + L1MC4 LINE L1 7456 7572 -470 477 288 41 20 chr6 132234874 132235118 -57044436 + MIR SINE MIR 16 261 -1 182 143 0 0 chr6 132235140 132235168 -57044386 - L3b LINE CR1 -100 1483 1456 666 142 17 33 chr6 132235401 132235521 -57044033 - FLAM_C SINE Alu -15 118 1 711 276 55 55 chr6 132236552 132236932 -57042622 + L2 LINE L2 2932 3311 -2 244 278 14 0 chr6 132237801 132237873 -57041681 + MIR SINE MIR 139 211 -51 195 408 128 0 chr6 132238049 132238174 -57041380 - L2 LINE L2 -25 3247 3107 2141 98 11 0 chr6 132239575 132239879 -57039675 + AluSx SINE Alu 3 309 0 228 268 14 0 chr6 132239966 132240037 -57039517 + Charlie8 DNA MER1_type 1345 1416 -1001 2165 87 14 3 chr6 132240335 132240621 -57038933 - AluY SINE Alu -22 289 1 1426 101 5 0 chr6 132241174 132241362 -57038192 - AluSp SINE Alu -17 296 108 859 147 24 6 chr6 132241483 132241653 -57037901 + L1MD1 LINE L1 6064 6236 -6 1848 162 10 16 chr6 132241771 132242085 -57037469 - AluJo SINE Alu 0 312 1 346 251 38 47 chr6 132242298 132242533 -57037021 + L1MC5 LINE L1 7627 7859 -102 1239 78 12 18 chr6 132243995 132244161 -57035393 - AluSg/x SINE Alu -15 295 131 594 209 37 52 chr6 132244294 132244485 -57035069 + MER112 DNA MER1_type 72 259 -1 376 321 45 50 chr6 132245601 132245822 -57033732 + MIR SINE MIR 43 262 0 219 309 175 24 chr6 132245877 132246003 -57033551 + MIR SINE MIR 48 192 -70 257 276 41 71 chr6 132247081 132247179 -57032375 - MIR SINE MIR -2 260 166 207 186 0 0 chr6 132247220 132247263 -57032291 + (CATA)n Simple_repeat Simple_repeat 4 46 0 245 296 35 12 chr6 132247524 132247620 -57031934 - MIR SINE MIR -53 155 57 237 245 29 88 chr6 132247881 132247983 -57031571 - MER5A DNA MER1_type -6 183 77 237 284 46 73 chr6 132248813 132248922 -57030632 + MIR3 SINE MIR 56 161 -47 274 265 48 0 chr6 132249209 132249292 -57030262 + L1MC4a LINE L1 7328 7414 -394 384 221 101 23 chr6 132249463 132249680 -57029874 + L1MC5 LINE L1 7500 7733 -228 279 0 0 0 chr6 132251081 132251112 -57028442 + (TG)n Simple_repeat Simple_repeat 1 31 0 2438 54 0 3 chr6 132251305 132251603 -57027951 - AluY SINE Alu -14 297 1 2335 151 62 5 chr6 132251758 132252161 -57027393 + MSTB LTR MaLR 1 426 0 1932 140 0 3 chr6 132252551 132252844 -57026710 - AluJb SINE Alu -20 292 1 295 303 61 20 chr6 132252987 132253086 -57026468 - L2 LINE L2 -12 3260 3158 674 157 0 0 chr6 132253562 132253670 -57025884 - AluSg/x SINE Alu -10 299 192 816 231 65 31 chr6 132353671 132353707 -56925847 - L1M4 LINE L1 -1623 4523 4490 2535 63 0 0 chr6 132353707 132354009 -56925545 - AluY SINE Alu -9 302 1 816 231 65 31 chr6 132354009 132354297 -56925257 - L1M4 LINE L1 -1656 4490 4188 22 0 0 0 chr6 132354313 132354335 -56925219 + AT_rich Low_complexity Low_complexity 1 22 0 273 289 106 92 chr6 132355233 132355375 -56924179 - MIR3 SINE MIR -50 158 15 839 166 78 88 chr6 132356842 132357059 -56922495 - MER58A DNA MER1_type -8 216 2 216 297 130 48 chr6 132357190 132357459 -56922095 - L2 LINE L2 -828 2486 2196 488 248 190 0 chr6 132357546 132357683 -56921871 - MIR3 SINE MIR -14 194 32 231 288 61 0 chr6 132357821 132357887 -56921667 + MIR SINE MIR 51 120 -142 219 309 0 0 chr6 132359632 132359687 -56919867 + (TG)n Simple_repeat Simple_repeat 1 55 0 649 215 15 8 chr6 132363673 132363803 -56915751 - FLAM_A SINE Alu -2 131 1 1030 163 79 0 chr6 132363974 132364177 -56915377 + MER20 DNA MER1_type 1 219 0 1342 142 98 66 chr6 132364604 132364711 -56914843 - AluJo SINE Alu -29 283 181 6842 98 35 19 chr6 132364711 132365763 -56913791 - MER11C LTR ERVK 0 1071 3 1342 142 98 66 chr6 132365763 132365929 -56913625 - AluJo SINE Alu -131 181 1 298 202 84 76 chr6 132367141 132367260 -56912294 + L2 LINE L2 3102 3221 -92 5225 130 52 15 chr6 132367273 132367942 -56911612 - L1MA8 LINE L1 -7 6284 5641 1887 112 87 7 chr6 132367942 132368218 -56911336 - AluSg SINE Alu -12 298 1 5225 130 52 15 chr6 132368218 132369397 -56910157 - L1MA8 LINE L1 -650 5641 4365 405 251 112 68 chr6 132369401 132369652 -56909902 - L1MA8 LINE L1 -2414 3732 3471 * 608 280 123 68 chr6 132369643 132370304 -56909250 - L1M4 LINE L1 -2695 3451 2755 435 300 31 51 chr6 132370490 132370747 -56908807 - L1M4 LINE L1 -3623 2523 2272 1312 218 110 48 chr6 132372612 132373093 -56906461 + MLT2B1 LTR ERVL 1 511 -9 1317 237 105 28 chr6 132373230 132373698 -56905856 + MLT1D LTR MaLR 1 504 -1 42424 36 3 1 chr6 132373760 132379905 -56899649 + L1PA3 LINE L1 1 6152 -3 267 54 0 0 chr6 132379941 132379978 -56899576 + (TG)n Simple_repeat Simple_repeat 1 37 0 344 252 19 9 chr6 132380559 132380666 -56898888 + LTR67 LTR ERVL 428 535 -22 502 221 88 15 chr6 132381004 132381140 -56898414 - MIR SINE MIR -1 261 116 603 203 7 27 chr6 132381898 132382046 -56897508 - MLT1G LTR MaLR -2 588 444 276 237 202 16 chr6 132382217 132382405 -56897149 - MLT1H1 LTR MaLR -294 296 55 2364 94 3 0 chr6 132382771 132383079 -56896475 - AluSp SINE Alu -4 309 1 1072 271 34 18 chr6 132383130 132383569 -56895985 - L1ME2 LINE L1 -10 6154 5709 322 262 85 33 chr6 132383567 132384773 -56894781 - L1ME2 LINE L1 -1517 4629 3268 * 1954 223 100 6 chr6 132384785 132385508 -56894046 - L1ME2 LINE L1 -3246 2900 2110 22 0 0 0 chr6 132385516 132385538 -56894016 + AT_rich Low_complexity Low_complexity 1 22 0 435 125 14 0 chr6 132385667 132385739 -56893815 - L1MC1 LINE L1 -1 6332 6260 1363 188 23 4 chr6 132385739 132386000 -56893554 - MSTB LTR MaLR 0 426 161 938 119 0 30 chr6 132386038 132386206 -56893348 - L1MC1 LINE L1 -370 5963 5801 628 125 10 10 chr6 132386227 132386331 -56893223 - MSTB LTR MaLR -322 104 1 4656 131 70 29 chr6 132386332 132386592 -56892962 - L1MC1 LINE L1 -70 6263 6015 2003 115 52 0 chr6 132386592 132386878 -56892676 - AluSc SINE Alu -8 301 1 4656 131 70 29 chr6 132386878 132387110 -56892444 - L1MC1 LINE L1 -318 6015 5794 1439 182 87 46 chr6 132387110 132387478 -56892076 - MLT1B LTR MaLR -4 386 4 4656 131 70 29 chr6 132387478 132387912 -56891642 - L1MC1 LINE L1 -539 5794 5299 514 121 0 12 chr6 132388112 132388195 -56891359 - MER45A DNA AcHobo 0 178 97 1319 212 108 3 chr6 132388498 132388823 -56890731 + MLT1A1 LTR MaLR 1 359 -6 939 188 29 29 chr6 132388962 132389169 -56890385 + MER58A DNA MER1_type 10 216 -8 2002 119 22 0 chr6 132389658 132389936 -56889618 + AluSx SINE Alu 1 284 -28 477 0 0 0 chr6 132389936 132389989 -56889565 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 322 271 13 73 chr6 132390178 132390262 -56889292 + MER5B DNA MER1_type 36 109 -69 1911 154 15 68 chr6 132390262 132390671 -56888883 + MLT1B LTR MaLR 2 388 -2 322 271 13 73 chr6 132390671 132390737 -56888817 + MER5B DNA MER1_type 109 177 -1 2389 86 0 7 chr6 132390932 132391235 -56888319 + AluSq SINE Alu 11 311 -2 678 309 21 63 chr6 132391937 132392368 -56887186 + L1MA9 LINE L1 1356 1768 -5728 11806 221 42 15 chr6 132393486 132394865 -56884689 + L1MA9 LINE L1 2255 3595 -3970 270 0 0 0 chr6 132394865 132394895 -56884659 + (CA)n Simple_repeat Simple_repeat 1 30 0 11806 221 42 15 chr6 132394895 132395705 -56883849 + L1MA9 LINE L1 3595 4381 -3184 1636 191 14 10 chr6 132395705 132395993 -56883561 + AluJo SINE Alu 6 294 -18 11806 221 42 15 chr6 132395993 132398185 -56881369 + L1MA9 LINE L1 4381 6700 -865 6596 119 36 18 chr6 132398198 132402837 -56876717 + L1PA7 LINE L1 12 4566 -1588 10288 52 76 7 chr6 132402837 132404123 -56875431 + SVA Other Other 12 1386 0 6596 119 36 18 chr6 132404123 132404876 -56874678 + L1PA7 LINE L1 4566 5304 -850 2551 57 0 3 chr6 132404876 132405176 -56874378 + AluY SINE Alu 1 299 -12 6596 119 36 18 chr6 132405176 132405606 -56873948 + L1PA7 LINE L1 5304 6153 -1 1972 196 49 22 chr6 132405608 132406102 -56873452 + L1MA9 LINE L1 6695 7201 -530 490 233 0 0 chr6 132406107 132406193 -56873361 + FRAM/FAM SINE Alu 1 82 -94 603 71 0 0 chr6 132406236 132406321 -56873233 + (GGGGA)n Simple_repeat Simple_repeat 5 89 0 2174 197 38 23 chr6 132406321 132406379 -56873175 + L1MA9 LINE L1 7194 7250 -481 1992 118 42 11 chr6 132406379 132406666 -56872888 + AluSx SINE Alu 1 296 -16 2174 197 38 23 chr6 132406666 132407130 -56872424 + L1MA9 LINE L1 7250 7724 -7 331 344 52 43 chr6 132407153 132407499 -56872055 + L1 LINE L1 1216 1564 -5932 3137 241 35 35 chr6 132408039 132410195 -56869359 + L1 LINE L1 2022 4179 -3386 9246 177 2 10 chr6 132410201 132410974 -56868580 + L1PA14 LINE L1 4 782 -6799 2249 112 3 13 chr6 132410974 132411279 -56868275 - AluY SINE Alu -9 302 1 9246 177 2 10 chr6 132411279 132412096 -56867458 + L1PA14 LINE L1 782 1581 -6000 1051 34 0 0 chr6 132412097 132412216 -56867338 - AluYb8 SINE Alu -19 299 181 16817 171 20 8 chr6 132412219 132418178 -56861376 + L1PA14 LINE L1 1570 7599 0 2165 185 34 48 chr6 132418181 132418823 -56860731 + L1 LINE L1 4172 4804 -2761 929 176 48 0 chr6 132418823 132419016 -56860538 + MSTB LTR MaLR 225 375 0 1741 191 10 0 chr6 132419059 132419363 -56860191 + AluJo SINE Alu 6 312 0 2478 147 81 2 chr6 132419363 132419892 -56859662 + L1 LINE L1 5782 6352 -1213 476 153 48 32 chr6 132419865 132419989 -56859565 + L1MA4 LINE L1 7593 7718 -1 * 501 290 115 32 chr6 132420543 132420857 -56858697 + LTR33 LTR ERVL 82 421 -100 305 246 48 63 chr6 132421050 132421176 -56858378 - MER91B DNA MER1_type -49 141 18 692 234 74 0 chr6 132421994 132422169 -56857385 + MER20 DNA MER1_type 2 189 -30 1310 224 48 27 chr6 132422583 132422954 -56856600 - MLT1B LTR MaLR -11 379 1 464 148 215 7 chr6 132422954 132423089 -56856465 - MER53 DNA DNA -26 163 1 1325 269 79 25 chr6 132423815 132424298 -56855256 - MLT1E LTR MaLR 0 593 85 230 288 105 68 chr6 132425151 132425446 -56854108 + L2 LINE L2 2561 2866 -448 2008 115 0 0 chr6 132425495 132425774 -56853780 + AluSx SINE Alu 27 305 -7 183 319 0 0 chr6 132426749 132426796 -56852758 - L2 LINE L2 -12 3301 3255 228 371 0 0 chr6 132427428 132427517 -56852037 + L2 LINE L2 569 657 -2657 692 284 87 5 chr6 132427546 132427764 -56851790 + MIR SINE MIR 23 258 -4 206 268 18 0 chr6 132428721 132428777 -56850777 + CT-rich Low_complexity Low_complexity 1 57 0 228 291 58 23 chr6 132429030 132429116 -56850438 + L2 LINE L2 2314 2402 -912 302 333 44 30 chr6 132429242 132429377 -56850177 + L2 LINE L2 2721 2857 -457 189 293 0 0 chr6 132429711 132429752 -56849802 + L2 LINE L2 3143 3183 -89 22 0 0 0 chr6 132430297 132430319 -56849235 + AT_rich Low_complexity Low_complexity 1 22 0 418 346 45 33 chr6 132431027 132431270 -56848284 - MIR SINE MIR -13 249 4 1407 171 0 64 chr6 132431934 132432110 -56847444 - AluJb SINE Alu -9 303 150 2405 85 3 0 chr6 132432110 132432405 -56847149 - AluSp SINE Alu -17 296 1 1407 171 0 64 chr6 132432405 132432509 -56847045 - AluJb SINE Alu -162 150 41 185 269 39 0 chr6 132432545 132432597 -56846957 + L2 LINE L2 3245 3298 -15 876 274 71 7 chr6 132433251 132433547 -56846007 + MLT1J2 LTR MaLR 3 317 -133 397 298 92 0 chr6 132434131 132434262 -56845292 + L2 LINE L2 3128 3270 -2 30 69 0 0 chr6 132434807 132434865 -56844689 + AT_rich Low_complexity Low_complexity 1 58 0 753 195 7 26 chr6 132434929 132435083 -56844471 - FRAM SINE Alu -14 152 2 1565 226 57 44 chr6 132435296 132435752 -56843802 + MLT1C LTR MaLR 6 467 0 3016 209 29 37 chr6 132436867 132437835 -56841719 - L1ME1 LINE L1 -44 6122 5163 284 286 201 45 chr6 132437909 132438070 -56841484 + MIR SINE MIR 3 210 -52 198 0 0 0 chr6 132438070 132438092 -56841462 + (TG)n Simple_repeat Simple_repeat 2 23 0 284 286 201 45 chr6 132438092 132438154 -56841400 + MIR SINE MIR 210 261 -1 719 237 92 50 chr6 132438813 132439075 -56840479 + MLT1L LTR MaLR 120 392 -223 262 269 152 12 chr6 132440299 132440470 -56839084 - L1ME4a LINE L1 -83 6038 5844 309 282 92 18 chr6 132440541 132440704 -56838850 - L1ME4a LINE L1 -395 5726 5552 894 200 0 6 chr6 132440709 132440879 -56838675 + AluJb SINE Alu 140 308 -4 291 330 62 24 chr6 132440881 132441169 -56838385 - L1ME4a LINE L1 -2249 5559 5261 196 301 151 21 chr6 132441389 132441482 -56838072 + L2 LINE L2 3151 3255 -17 1557 163 14 7 chr6 132441683 132441976 -56837578 - MLT1A1 LTR MaLR -69 398 1 2804 7 0 0 chr6 132442227 132442531 -56837023 - AluYa5 SINE Alu -7 304 1 4835 107 7 1 chr6 132443223 132443949 -56835605 + L1PA13 LINE L1 5367 6096 -67 423 230 191 0 chr6 132444091 132444217 -56835337 + MIR SINE MIR 8 157 -105 206 214 180 22 chr6 132444269 132444358 -56835196 + MIR SINE MIR 160 262 0 263 196 233 32 chr6 132444502 132444691 -56834863 + L1ME2 LINE L1 5721 5947 -217 314 235 0 24 chr6 132444935 132445020 -56834534 - MLT1I LTR MaLR -244 165 83 586 313 149 12 chr6 132446559 132446888 -56832666 + LTR16A LTR ERVL 77 450 0 937 250 64 4 chr6 132448107 132448343 -56831211 + MIR SINE MIR 13 262 0 826 86 0 0 chr6 132450504 132450620 -56828934 - L1PA8 LINE L1 -5 6167 6052 518 130 81 5 chr6 132450632 132450782 -56828772 - Tigger2 DNA MER2_type -156 2562 2391 1892 130 3 0 chr6 132450784 132451068 -56828486 - Tigger2 DNA MER2_type -1965 753 469 25 0 0 0 chr6 132451099 132451124 -56828430 + AT_rich Low_complexity Low_complexity 1 25 0 36529 75 5 41 chr6 132451147 132457530 -56822024 - L1PA5 LINE L1 -1 6153 11 28928 127 10 27 chr6 132457544 132463941 -56815613 - L1PA8 LINE L1 -104 6383 6 1841 138 64 3 chr6 132464001 132464284 -56815270 - AluSx SINE Alu -11 301 2 27 39 0 19 chr6 132465394 132465426 -56814128 + AT_rich Low_complexity Low_complexity 1 33 -18 2807 6 3 3 chr6 132465426 132465737 -56813817 - AluYa5 SINE Alu 0 311 1 27 39 0 19 chr6 132465737 132465756 -56813798 + AT_rich Low_complexity Low_complexity 33 51 0 214 295 33 0 chr6 132466940 132467001 -56812553 - L2 LINE L2 -8 3305 3243 263 385 58 16 chr6 132467044 132467423 -56812131 + L1MEc LINE L1 35 429 -5967 1062 185 12 58 chr6 132467491 132467750 -56811804 - MLT1B LTR MaLR -143 247 1 1003 249 84 67 chr6 132467768 132468411 -56811143 + L1MEc LINE L1 1587 2240 -4156 1591 196 12 20 chr6 132468471 132468812 -56810742 - MLT1B LTR MaLR 0 390 53 287 288 49 10 chr6 132468842 132468944 -56810610 + MLT1G LTR MaLR 28 138 -419 920 242 19 26 chr6 132468967 132469236 -56810318 + L1ME2 LINE L1 5779 6045 -119 2319 138 34 58 chr6 132469248 132469661 -56809893 - MSTB1 LTR MaLR 0 432 30 1593 171 52 7 chr6 132469731 132470041 -56809513 - MLT1D LTR MaLR -2 503 180 1417 215 96 9 chr6 132470078 132470423 -56809131 - MSTD LTR MaLR 0 396 23 7036 41 0 1 chr6 132470424 132471272 -56808282 + L1PA5 LINE L1 5302 6148 -6 482 208 63 88 chr6 132471360 132471519 -56808035 - MLT1D LTR MaLR -471 155 1 202 238 0 79 chr6 132471531 132471594 -56807960 - L2 LINE L2 -5 3308 3251 464 266 122 0 chr6 132471613 132471752 -56807802 + L2 LINE L2 3158 3313 0 1163 124 4 66 chr6 132473323 132473549 -56806005 - L1PA16 LINE L1 0 6166 5955 1451 203 59 0 chr6 132473566 132473856 -56805698 - AluJb SINE Alu -5 307 1 470 127 0 0 chr6 132474177 132474256 -56805298 - AluSp/q SINE Alu -5 308 230 1565 131 0 0 chr6 132474288 132474502 -56805052 + AluSx SINE Alu 1 214 -98 2351 68 3 3 chr6 132474943 132475254 -56804300 + AluYa5 SINE Alu 1 311 0 481 275 54 20 chr6 132475709 132475858 -56803696 - MIR SINE MIR -54 208 55 476 353 22 0 chr6 132476381 132476517 -56803037 - L2 LINE L2 0 3272 3134 3411 163 29 3 chr6 132477842 132478425 -56801129 + Tigger1 DNA MER2_type 1 598 -1820 2658 104 2 13 chr6 132478437 132478832 -56800722 - Tigger1 DNA MER2_type -1426 992 602 6305 129 74 1 chr6 132478860 132479889 -56799665 + Tigger1 DNA MER2_type 1314 2417 -1 1299 169 39 4 chr6 132480825 132481104 -56798450 - L1MC3 LINE L1 -1 7784 7496 1228 296 8 0 chr6 132481138 132481499 -56798055 - L1MCb LINE L1 -5112 933 570 538 279 40 31 chr6 132481673 132481895 -56797659 - L2 LINE L2 -1641 1673 1450 1130 85 6 0 chr6 132482726 132482890 -56796664 + L1MA5 LINE L1 6093 6257 -43 12922 180 30 51 chr6 132482891 132486229 -56793325 + L1MA4 LINE L1 16 3134 -3348 1661 168 46 7 chr6 132486229 132486514 -56793040 + AluJb SINE Alu 1 296 -16 12922 180 30 51 chr6 132486514 132489790 -56789764 + L1MA4 LINE L1 3134 6476 -6 318 132 0 0 chr6 132489806 132489859 -56789695 + L1MA5A LINE L1 6243 6295 -2 25 83 0 0 chr6 132490057 132490117 -56789437 + AT_rich Low_complexity Low_complexity 1 60 0 1040 274 118 14 chr6 132490248 132490605 -56788949 + MLT1J LTR MaLR 12 405 -106 1131 257 44 47 chr6 132490737 132491076 -56788478 - MLT1H LTR MaLR -200 349 12 765 200 27 7 chr6 132491736 132491886 -56787668 - Tigger3(Golem) DNA MER2_type -2 3027 2875 473 190 0 0 chr6 132491885 132491964 -56787590 - Tigger3(Golem) DNA MER2_type -2881 148 70 * 2183 57 11 0 chr6 132491966 132492229 -56787325 - AluY SINE Alu -10 301 36 1112 207 15 0 chr6 132492229 132492432 -56787122 - MER20 DNA MER1_type -13 206 1 29 47 0 0 chr6 132492693 132492736 -56786818 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr6 132493026 132493051 -56786503 + AT_rich Low_complexity Low_complexity 1 25 0 4336 237 29 134 chr6 132493125 132494946 -56784608 + L1M2 LINE L1 6 1634 -4647 * 9626 184 35 45 chr6 132494941 132495179 -56784375 + L1M2 LINE L1 2406 2645 -3705 207 0 0 0 chr6 132495179 132495202 -56784352 + (TA)n Simple_repeat Simple_repeat 2 24 0 9626 184 35 45 chr6 132495202 132496152 -56783402 + L1M2 LINE L1 2645 3602 -2748 313 51 0 0 chr6 132496152 132496191 -56783363 + MADE1 DNA Mariner 1 39 -41 9626 184 35 45 chr6 132496191 132497357 -56782197 + L1M2 LINE L1 3602 4777 -1573 981 304 20 21 chr6 132497376 132497735 -56781819 + L1MC1 LINE L1 5960 6311 -22 3993 166 32 2 chr6 132497878 132498883 -56780671 + L1M2 LINE L1 4754 5789 -706 546 311 31 34 chr6 132498886 132499241 -56780313 + L1M2 LINE L1 7 1086 -6499 5144 215 46 13 chr6 132500621 132502494 -56777060 + L1PA12 LINE L1 1532 3495 -3302 1665 150 169 68 chr6 132502494 132502861 -56776693 - MER4A LTR ERV1 0 664 261 545 122 89 0 chr6 132502861 132502951 -56776603 - MER4A LTR ERV1 -566 98 1 6028 108 48 40 chr6 132502958 132504007 -56775547 - MER4A-int LTR ERV1 -2 6596 5540 * 6805 114 63 17 chr6 132504002 132505194 -56774360 - MER4A-int LTR ERV1 -1208 5390 4144 18765 44 2 1 chr6 132505194 132508309 -56771245 - L1PA4 LINE L1 0 6155 3038 12684 45 1 3 chr6 132508309 132510365 -56769189 + L1PA4 LINE L1 987 3039 -3107 2404 114 51 70 chr6 132510365 132510955 -56768599 - MER4A-int LTR ERV1 -2446 4152 3552 2091 112 0 3 chr6 132510955 132511270 -56768284 - AluY SINE Alu 0 311 8 2404 114 51 70 chr6 132511270 132511527 -56768027 - MER4A-int LTR ERV1 -3046 3552 2737 1441 161 58 0 chr6 132511527 132511770 -56767784 + LTR8 LTR ERV1 1 257 -434 3735 77 78 68 chr6 132511770 132511954 -56767600 - MER4-int LTR ERV1 -4103 2495 2314 2270 97 3 0 chr6 132511954 132512252 -56767302 + AluSg SINE Alu 1 299 -11 3735 77 78 68 chr6 132512252 132512785 -56766769 - MER4-int LTR ERV1 -4284 2314 1771 1428 70 11 155 chr6 132512783 132513130 -56766424 - MER4-int LTR ERV1 -4266 1268 503 * 238 178 0 44 chr6 132513151 132513196 -56766358 - LTR49 LTR ERV1 -282 313 271 292 104 0 21 chr6 132513254 132513302 -56766252 - MER4-int LTR ERV1 -5799 799 753 8288 181 139 6 chr6 132513314 132516241 -56763313 + L1PA12 LINE L1 3490 6819 0 1143 133 28 0 chr6 132516329 132516509 -56763045 + MSTB LTR MaLR 3 187 -239 2168 123 0 3 chr6 132516513 132516814 -56762740 + THE1B LTR MaLR 65 364 0 334 34 0 296 chr6 132516844 132516880 -56762674 - THE1B LTR MaLR -302 62 64 2071 146 0 0 chr6 132516880 132517188 -56762366 + AluSx SINE Alu 5 312 0 334 34 0 296 chr6 132517188 132517239 -56762315 - THE1B LTR MaLR -299 65 1 10213 108 25 45 chr6 132517239 132517546 -56762008 - THE1B-int LTR MaLR 0 1580 1268 405 39 0 0 chr6 132517546 132517597 -56761957 + (TTA)n Simple_repeat Simple_repeat 3 53 0 10478 49 0 0 chr6 132517597 132519655 -56759899 - L1PA5 LINE L1 -18 6136 4079 10213 108 25 45 chr6 132519655 132520940 -56758614 - THE1B-int LTR MaLR -310 1270 19 2202 149 8 24 chr6 132520976 132521346 -56758208 - THE1B LTR MaLR 0 364 1 1136 166 35 46 chr6 132521348 132521607 -56757947 + L1MA7 LINE L1 6014 6269 -22 280 316 10 0 chr6 132522285 132522383 -56757171 + Charlie2 DNA MER1_type 50 148 -2714 572 184 0 10 chr6 132522443 132522541 -56757013 + LTR40b LTR ERVL 366 462 0 524 267 58 23 chr6 132522542 132522714 -56756840 + L2 LINE L2 3136 3313 0 641 298 40 36 chr6 132523066 132523291 -56756263 + MIR SINE MIR 26 251 -11 292 240 74 33 chr6 132524542 132524663 -56754891 - MER94 DNA DNA -7 127 2 358 292 95 36 chr6 132525918 132526086 -56753468 - L2 LINE L2 0 3313 3136 28 48 0 0 chr6 132526156 132526198 -56753356 + AT_rich Low_complexity Low_complexity 1 42 0 11319 79 4 2 chr6 132526734 132529067 -56750487 - L1PA7 LINE L1 -8 6146 3816 2133 198 101 55 chr6 132529408 132529722 -56749832 - L1MD3 LINE L1 -271 7514 7216 233 242 44 44 chr6 132529722 132529813 -56749741 - MLT1F1 LTR MaLR -442 125 35 2133 198 101 55 chr6 132529813 132530279 -56749275 - L1MD3 LINE L1 -569 7216 6615 279 324 94 45 chr6 132530312 132530759 -56748795 - L1MEd LINE L1 -5590 529 61 261 288 68 0 chr6 132530822 132530895 -56748659 - MIR SINE MIR -68 140 63 2484 84 3 0 chr6 132530978 132531288 -56748266 + AluSp SINE Alu 1 311 -2 1755 171 0 4 chr6 132532052 132532326 -56747228 + AluJb SINE Alu 1 273 -39 21 0 0 0 chr6 132532610 132532631 -56746923 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 132532782 132532811 -56746743 + AT_rich Low_complexity Low_complexity 1 29 0 1619 197 17 0 chr6 132532939 132533229 -56746325 - AluJo SINE Alu -17 295 1 255 61 0 0 chr6 132535493 132535526 -56744028 + (TG)n Simple_repeat Simple_repeat 2 34 0 1002 303 151 4 chr6 132535609 132536169 -56743385 + L2 LINE L2 2671 3313 0 246 263 12 12 chr6 132536212 132536292 -56743262 + LTR67 LTR ERVL 478 557 0 180 0 0 0 chr6 132536300 132536320 -56743234 + (T)n Simple_repeat Simple_repeat 1 20 0 524 147 31 31 chr6 132537142 132537271 -56742283 - L1MA4A LINE L1 0 6303 6175 233 51 0 77 chr6 132537304 132537343 -56742211 + MLT2A1 LTR ERVL 236 271 -173 3441 95 72 94 chr6 132537343 132537753 -56741801 - THE1C-int LTR MaLR -944 636 244 2206 107 17 0 chr6 132537753 132538044 -56741510 - AluSx SINE Alu -16 296 1 3441 95 72 94 chr6 132538044 132538283 -56741271 - THE1C-int LTR MaLR -1336 244 1 1512 96 5 5 chr6 132538283 132538492 -56741062 - THE1C LTR MaLR 0 375 167 276 221 0 13 chr6 132538492 132538569 -56740985 - L1M2 LINE L1 -4643 2206 2131 1704 192 3 13 chr6 132539412 132539724 -56739830 - AluJo SINE Alu -3 309 1 1437 191 34 0 chr6 132540212 132540510 -56739044 + L1MA9 LINE L1 6001 6308 -4 893 192 26 31 chr6 132540514 132540707 -56738847 + MER3 DNA MER1_type 18 209 0 319 266 0 0 chr6 132541020 132541084 -56738470 - MER113 DNA MER1_type? 0 521 458 22 35 0 0 chr6 132541099 132541128 -56738426 + AT_rich Low_complexity Low_complexity 1 29 0 2721 165 23 4 chr6 132541920 132542394 -56737160 + L1MB2 LINE L1 5450 5932 -239 1071 131 68 50 chr6 132542394 132542615 -56736939 - MSTB1 LTR MaLR -1 431 207 251 315 14 0 chr6 132542619 132542692 -56736862 + L2 LINE L2 3227 3300 -13 180 0 0 0 chr6 132543425 132543445 -56736109 + (T)n Simple_repeat Simple_repeat 1 20 0 459 330 160 46 chr6 132543505 132544709 -56734845 - L2 LINE L2 -2 3270 1932 2005 173 124 68 chr6 132544721 132545206 -56734348 + MLT2B1 LTR ERVL 1 512 -8 331 287 113 72 chr6 132545233 132545339 -56734215 - L2 LINE L2 -1402 1912 1812 1644 189 7 7 chr6 132545339 132545624 -56733930 + AluJb SINE Alu 1 285 -27 423 0 0 0 chr6 132545624 132545671 -56733883 + (CA)n Simple_repeat Simple_repeat 2 48 0 192 40 0 0 chr6 132545670 132545695 -56733859 + (GA)n Simple_repeat Simple_repeat 2 26 0 331 287 113 72 chr6 132545671 132545852 -56733702 - L2 LINE L2 -1501 1813 1637 250 402 47 19 chr6 132546368 132546582 -56732972 - L2 LINE L2 -370 2944 2725 1163 307 94 56 chr6 132546640 132547896 -56731658 - L2 LINE L2 -787 2527 1224 331 334 174 28 chr6 132547909 132548370 -56731184 - L2 LINE L2 -2485 829 302 1249 315 102 46 chr6 132548388 132549409 -56730145 - L2 LINE L2 0 3313 2227 211 200 67 27 chr6 132549411 132549486 -56730068 - L2 LINE L2 0 3272 3195 1435 313 183 40 chr6 132549491 132549796 -56729758 - L2 LINE L2 -781 2533 2273 2272 179 29 5 chr6 132549796 132550210 -56729344 + MSTB LTR MaLR 3 426 0 1435 313 183 40 chr6 132550210 132550515 -56729039 - L2 LINE L2 -1041 2273 2013 3320 129 25 46 chr6 132550515 132551128 -56728426 - MER4A LTR ERV1 0 600 1 1435 313 183 40 chr6 132551128 132551352 -56728202 - L2 LINE L2 -1301 2013 1822 1817 213 42 15 chr6 132551352 132551755 -56727799 + MLT2D LTR ERVL 1 414 0 1435 313 183 40 chr6 132551755 132552165 -56727389 - L2 LINE L2 -1492 1822 1472 1609 140 112 38 chr6 132552165 132552479 -56727075 + MER1B DNA MER1_type 1 337 0 1435 313 183 40 chr6 132552479 132552645 -56726909 - L2 LINE L2 -1842 1472 918 531 306 90 22 chr6 132553713 132554163 -56725391 - HAL1 LINE L1 0 2507 1952 * 3109 236 50 6 chr6 132554159 132555054 -56724500 - L1M4 LINE L1 -1508 4638 3704 994 192 60 89 chr6 132555054 132555356 -56724198 + MER58B DNA MER1_type 45 337 -4 260 321 16 22 chr6 132555380 132555564 -56723990 - L1MEc LINE L1 -5554 842 660 440 350 21 2 chr6 132555833 132556066 -56723488 - L1MEc LINE L1 -5673 532 177 219 237 52 12 chr6 132556297 132556470 -56723084 + (TA)n Simple_repeat Simple_repeat 1 180 0 2768 10 0 3 chr6 132556523 132556827 -56722727 - AluYa5 SINE Alu -8 303 1 361 262 33 33 chr6 132556828 132556950 -56722604 - MIR SINE MIR -113 149 28 757 188 0 0 chr6 132558621 132558749 -56720805 - FLAM_A SINE Alu -5 128 1 339 44 0 0 chr6 132560688 132560733 -56718821 + (CCG)n Simple_repeat Simple_repeat 2 46 0 341 336 78 75 chr6 132560965 132561694 -56717860 - L1M2 LINE L1 -5444 1405 675 22 0 0 0 chr6 132561852 132561874 -56717680 + GC_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr6 132562840 132562881 -56716673 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr6 132564695 132564717 -56714837 + AT_rich Low_complexity Low_complexity 1 22 0 360 176 0 0 chr6 132564890 132564958 -56714596 + CT-rich Low_complexity Low_complexity 1 68 0 1641 179 0 35 chr6 132564966 132565256 -56714298 - AluJo SINE Alu -32 280 1 30 45 0 0 chr6 132567231 132567275 -56712279 + AT_rich Low_complexity Low_complexity 1 44 0 2075 127 3 22 chr6 132567280 132567594 -56711960 + AluSx SINE Alu 1 308 -4 492 18 0 0 chr6 132567597 132567654 -56711900 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 221 255 0 0 chr6 132568042 132568089 -56711465 - L2 LINE L2 -5 3308 3262 22 0 0 0 chr6 132568404 132568426 -56711128 + AT_rich Low_complexity Low_complexity 1 22 0 317 346 82 35 chr6 132569105 132569446 -56710108 - L2 LINE L2 -451 2863 2507 206 274 39 0 chr6 132569461 132569512 -56710042 + L2 LINE L2 3252 3304 -9 958 208 118 10 chr6 132569602 132569891 -56709663 + MER5C DNA MER1_type 5 324 0 2138 283 150 31 chr6 132570370 132572157 -56707397 - L2 LINE L2 -2 3311 1267 1710 171 10 17 chr6 132572409 132572701 -56706853 - AluJo SINE Alu -20 292 3 192 336 0 52 chr6 132572805 132572939 -56706615 + MIR SINE MIR 103 229 -33 245 289 10 10 chr6 132573166 132573270 -56706284 + (TATATG)n Simple_repeat Simple_repeat 4 107 0 25 31 0 0 chr6 132574423 132574455 -56705099 + AT_rich Low_complexity Low_complexity 1 32 0 342 0 0 0 chr6 132574561 132574599 -56704955 + (CA)n Simple_repeat Simple_repeat 2 39 0 232 170 0 0 chr6 132576013 132576060 -56703494 - L1PB4 LINE L1 -2 6154 6108 325 223 64 0 chr6 132576241 132576335 -56703219 + MLT1L LTR MaLR 505 604 -11 269 169 17 0 chr6 132576983 132577042 -56702512 + (TA)n Simple_repeat Simple_repeat 2 61 0 322 266 0 43 chr6 132577080 132577174 -56702380 - L1MC4 LINE L1 -1339 6703 6614 * 336 255 0 43 chr6 132577098 132577192 -56702362 + L1MC4 LINE L1 6614 6703 -1339 329 245 0 43 chr6 132577176 132577270 -56702284 - L1MC4 LINE L1 -1339 6703 6614 * 313 322 0 0 chr6 132577218 132577308 -56702246 + L1MC4 LINE L1 6614 6703 -1339 * 305 276 35 0 chr6 132577292 132577379 -56702175 - L1MC4 LINE L1 -1339 6703 6614 * 280 226 11 32 chr6 132577379 132577472 -56702082 + (TA)n Simple_repeat Simple_repeat 1 91 0 459 292 0 0 chr6 132577491 132577898 -56701656 + (CATATA)n Simple_repeat Simple_repeat 1 407 0 242 250 36 0 chr6 132577915 132577999 -56701555 - L1MC4 LINE L1 -1341 6701 6615 254 206 31 52 chr6 132578002 132578099 -56701455 - L1MC4 LINE L1 -1339 6703 6609 606 262 40 36 chr6 132578890 132579138 -56700416 + MLT1L LTR MaLR 367 615 0 224 254 45 0 chr6 132579457 132579524 -56700030 - L2 LINE L2 0 3272 3203 1846 141 61 25 chr6 132579606 132579968 -56699586 + THE1C LTR MaLR 1 375 0 198 171 0 0 chr6 132580024 132580065 -56699489 + (TG)n Simple_repeat Simple_repeat 1 41 0 432 340 128 3 chr6 132580093 132580414 -56699140 - L2 LINE L2 -339 2975 2615 601 268 56 6 chr6 132580555 132580734 -56698820 + MIR SINE MIR 75 262 0 408 146 146 62 chr6 132581159 132581255 -56698299 + L2 LINE L2 3210 3313 0 3527 103 4 4 chr6 132582392 132582889 -56696665 + LOR1a LTR ERV1 1 497 0 189 0 0 0 chr6 132582903 132582924 -56696630 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 354 123 0 0 chr6 132582958 132583015 -56696539 + (TG)n Simple_repeat Simple_repeat 2 58 0 192 40 0 0 chr6 132583017 132583042 -56696512 + (GA)n Simple_repeat Simple_repeat 2 26 0 2026 160 0 6 chr6 132583044 132583388 -56696166 - MLT2C1 LTR ERVL -55 342 1 542 254 178 0 chr6 132583440 132583625 -56695929 - MIR SINE MIR -26 236 19 475 240 126 17 chr6 132583677 132583852 -56695702 - MLT1K LTR MaLR -30 558 365 303 291 39 19 chr6 132584476 132584579 -56694975 + MIR SINE MIR 80 184 -78 216 0 0 0 chr6 132585126 132585150 -56694404 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1525 169 17 114 chr6 132585440 132585842 -56693712 + MLT1A1 LTR MaLR 1 363 -2 460 248 147 16 chr6 132585865 132585994 -56693560 - MIR SINE MIR -112 150 5 1993 131 3 3 chr6 132588351 132588656 -56690898 + AluSq SINE Alu 1 305 0 2990 187 16 52 chr6 132588801 132589476 -56690078 + MER82 DNA MER2_type 1 651 -2 314 347 80 17 chr6 132590549 132590725 -56688829 - MIR SINE MIR -48 214 28 1082 185 49 49 chr6 132592526 132592769 -56686785 - AluJo SINE Alu -1 311 69 219 69 0 0 chr6 132593920 132593949 -56685605 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1057 140 11 0 chr6 132593976 132594155 -56685399 + L1M2 LINE L1 5600 5780 -511 1836 182 0 22 chr6 132594156 132594475 -56685079 - AluJb SINE Alu 0 312 1 302 290 90 22 chr6 132595605 132595774 -56683780 - MIR SINE MIR -58 150 5 22 35 0 0 chr6 132595943 132595972 -56683582 + AT_rich Low_complexity Low_complexity 1 29 0 381 43 0 0 chr6 132598103 132598150 -56681404 + (CA)n Simple_repeat Simple_repeat 2 48 0 547 278 11 34 chr6 132598466 132598642 -56680912 - L2 LINE L2 -3 3310 3139 251 253 81 35 chr6 132598906 132598993 -56680561 - MIR SINE MIR -51 211 121 273 197 158 53 chr6 132600429 132600505 -56679049 - L2 LINE L2 -1 3312 3229 2806 207 31 15 chr6 132600843 132601451 -56678103 - MLT1E2 LTR MaLR 0 626 9 332 326 51 34 chr6 132601494 132601669 -56677885 - MIR SINE MIR -69 193 16 196 322 55 77 chr6 132602479 132602662 -56676892 - MIR SINE MIR -73 189 11 2194 263 132 18 chr6 132603028 132604173 -56675381 - L2 LINE L2 0 3313 2042 197 394 14 0 chr6 132604596 132604667 -56674887 - L2 LINE L2 0 3272 3201 222 367 60 33 chr6 132604841 132604991 -56674563 - L2 LINE L2 -186 3086 2933 364 304 36 14 chr6 132605094 132605232 -56674322 - MIR SINE MIR -35 227 87 222 128 0 0 chr6 132608225 132608264 -56671290 + (TG)n Simple_repeat Simple_repeat 2 40 0 216 204 20 0 chr6 132609445 132609494 -56670060 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 417 295 174 5 chr6 132610207 132610414 -56669140 - MIR SINE MIR -11 251 10 24 32 0 0 chr6 132610922 132610953 -56668601 + AT_rich Low_complexity Low_complexity 1 31 0 184 256 0 0 chr6 132611828 132611871 -56667683 - MIR SINE MIR -92 116 74 364 185 0 37 chr6 132612577 132612655 -56666899 - MER20 DNA MER1_type -3 216 142 955 236 5 0 chr6 132612655 132612854 -56666700 + MER1B DNA MER1_type 2 201 -96 1278 184 81 11 chr6 132612997 132613268 -56666286 + MSTA LTR MaLR 137 426 -2 871 111 44 0 chr6 132613269 132613404 -56666150 + MER1B DNA MER1_type 199 339 0 733 196 7 7 chr6 132613404 132613550 -56666004 - MER20 DNA MER1_type -72 147 2 235 258 0 0 chr6 132614845 132614906 -56664648 + MIR SINE MIR 50 111 -97 320 281 22 11 chr6 132615233 132615322 -56664232 + L2 LINE L2 3163 3252 -20 3363 124 45 5 chr6 132618202 132618774 -56660780 + Tigger3b DNA MER2_type 2 596 -635 338 293 142 24 chr6 132618931 132619143 -56660411 - MIR SINE MIR -6 256 20 357 350 8 0 chr6 132619195 132619312 -56660242 - L2 LINE L2 -21 3251 3134 208 291 26 43 chr6 132622025 132622142 -56657412 + MIR SINE MIR 23 137 -71 322 189 11 78 chr6 132622170 132622260 -56657294 + MER63 DNA MER1_type 39 748 -314 337 262 47 54 chr6 132622319 132622468 -56657086 + MIR SINE MIR 115 262 0 2325 107 11 93 chr6 132622895 132623334 -56656220 - L1PA7 LINE L1 -2 6152 5750 3015 159 10 0 chr6 132623842 132624333 -56655221 - LOR1a LTR ERV1 0 497 2 1623 156 46 23 chr6 132624752 132624846 -56654708 - MLT1B LTR MaLR 0 467 377 4445 113 77 71 chr6 132624846 132625667 -56653887 + LTR12 LTR ERV1 1 826 0 1623 156 46 23 chr6 132625667 132626028 -56653526 - MLT1B LTR MaLR -90 377 1 340 303 117 19 chr6 132627792 132627954 -56651600 + MER5A DNA MER1_type 12 189 0 665 229 168 48 chr6 132629411 132629869 -56649685 - L1ME4a LINE L1 -8 6113 5601 1030 93 0 0 chr6 132629873 132630013 -56649541 - AluSg/x SINE Alu 0 312 173 332 342 68 19 chr6 132630013 132630279 -56649275 - L1ME4a LINE L1 -524 5597 5319 21 71 0 0 chr6 132630619 132630661 -56648893 + AT_rich Low_complexity Low_complexity 1 42 0 693 196 92 0 chr6 132631419 132631592 -56647962 + MER53 DNA DNA 1 189 0 7079 125 43 9 chr6 132633246 132634402 -56645152 - THE1B-int LTR MaLR -385 1195 1 2742 91 6 3 chr6 132634404 132634765 -56644789 - THE1B LTR MaLR -2 362 1 1754 150 31 33 chr6 132634947 132635306 -56644248 - MLT1B LTR MaLR -10 380 23 363 217 198 9 chr6 132635718 132635824 -56643730 + L2 LINE L2 3187 3312 -1 2097 94 0 7 chr6 132635861 132636164 -56643390 + AluSg SINE Alu 21 310 0 535 168 0 0 chr6 132636698 132636793 -56642761 + L1PA3 LINE L1 2 96 -6365 * 32082 60 6 63 chr6 132636760 132642589 -56636965 + L1PA3 LINE L1 893 6377 -93 330 235 20 41 chr6 132643381 132643479 -56636075 + MIR SINE MIR 120 215 -47 436 206 10 10 chr6 132643485 132643587 -56635967 + MER69 DNA AcHobo 2424 2525 -1 1516 181 55 17 chr6 132644329 132644622 -56634932 - AluJo SINE Alu -8 304 1 286 337 0 11 chr6 132644622 132644711 -56634843 - L2 LINE L2 -10 3262 3175 230 355 79 13 chr6 132695098 132695250 -56584304 - L3b LINE CR1 -54 1529 1368 316 320 68 20 chr6 132695275 132695422 -56584132 - L2 LINE L2 -2 3311 3158 1137 201 94 59 chr6 132695525 132695899 -56583655 + L1MCa LINE L1 16 402 -6024 1254 238 123 32 chr6 132695901 132696485 -56583069 - L1MCa LINE L1 -5092 953 394 * 2017 173 106 11 chr6 132696479 132697240 -56582314 + L1MCa LINE L1 1217 2140 -4286 889 113 0 0 chr6 132697240 132697364 -56582190 + MER41C LTR ERV1 1 124 -430 923 100 0 0 chr6 132697464 132697631 -56581923 - AluSc SINE Alu 0 328 162 2078 128 61 6 chr6 132697632 132697976 -56581578 + MER41C LTR ERV1 192 554 0 1683 173 46 7 chr6 132697976 132698378 -56581176 + L1MCa LINE L1 2137 2478 -3948 1130 142 8 134 chr6 132698378 132698458 -56581096 + L1MC1 LINE L1 6097 6186 -147 1701 192 20 0 chr6 132698458 132698750 -56580804 - AluJo SINE Alu -14 298 1 1130 142 8 134 chr6 132698750 132698937 -56580617 + L1MC1 LINE L1 6186 6330 -3 475 188 0 10 chr6 132698935 132699036 -56580518 + L1MCa LINE L1 2553 2652 -3774 * 231 333 49 0 chr6 132699041 132699143 -56580411 - L3b LINE CR1 -344 1239 1133 569 284 76 15 chr6 132699410 132699607 -56579947 - MIR SINE MIR -50 212 4 1306 86 0 17 chr6 132699867 132700041 -56579513 - AluY SINE Alu -140 171 1 700 231 78 46 chr6 132701132 132701413 -56578141 - Charlie2b DNA MER1_type -1669 1113 824 595 285 58 42 chr6 132701455 132701767 -56577787 - Charlie2b DNA MER1_type -2465 317 1 431 323 73 27 chr6 132702271 132702531 -56577023 - L3 LINE CR1 -1 1576 1305 2664 250 33 6 chr6 132703014 132703702 -56575852 - L1ME1 LINE L1 -8 6158 5452 587 204 38 0 chr6 132703950 132704082 -56575472 - L1M2 LINE L1 -870 5442 5306 1257 102 6 0 chr6 132704943 132705110 -56574444 - AluSq SINE Alu -20 293 126 22 0 0 0 chr6 132706422 132706444 -56573110 + AT_rich Low_complexity Low_complexity 1 22 0 504 288 73 11 chr6 132706764 132706941 -56572613 - MIR SINE MIR -36 226 39 191 359 38 46 chr6 132707077 132707208 -56572346 - L3b LINE CR1 -157 1426 1297 25 0 0 0 chr6 132707435 132707460 -56572094 + AT_rich Low_complexity Low_complexity 1 25 0 518 323 46 10 chr6 132709539 132709734 -56569820 + MIR3 SINE MIR 1 202 -6 323 300 25 17 chr6 132711572 132711692 -56567862 + MIR SINE MIR 96 216 -46 10399 31 1 1 chr6 132711699 132712948 -56566606 - L1P2 LINE L1 -1282 4864 3616 4654 22 0 0 chr6 132712947 132713574 -56565980 + L1P2 LINE L1 4848 5474 -681 * 370 293 7 20 chr6 132713682 132713829 -56565725 - L2 LINE L2 -710 2604 2460 655 245 27 5 chr6 132714221 132714405 -56565149 + MIR SINE MIR 73 260 -2 220 158 0 26 chr6 132714439 132714477 -56565077 + MIR SINE MIR 114 150 -112 602 100 0 11 chr6 132714515 132714636 -56564918 + AluY SINE Alu 206 311 0 328 311 95 34 chr6 132715444 132715708 -56563846 - L1ME4a LINE L1 -238 5883 5604 1027 229 74 9 chr6 132716500 132716731 -56562823 + MIR SINE MIR 17 262 0 180 152 0 0 chr6 132718983 132719016 -56560538 + CT-rich Low_complexity Low_complexity 3 35 0 1736 159 10 7 chr6 132722147 132722443 -56557111 + AluJo SINE Alu 1 297 -15 216 0 0 0 chr6 132723092 132723116 -56556438 + (CA)n Simple_repeat Simple_repeat 2 25 0 2514 63 0 0 chr6 132723232 132723532 -56556022 - AluY SINE Alu -11 300 1 1631 158 60 40 chr6 132724358 132724388 -56555166 - MLT1A1 LTR MaLR -7 358 330 6882 115 52 22 chr6 132724388 132725582 -56553972 + Tigger3b DNA MER2_type 2 1231 0 1631 158 60 40 chr6 132725582 132725898 -56553656 - MLT1A1 LTR MaLR -35 330 5 302 196 0 113 chr6 132726390 132726487 -56553067 - L1MA9 LINE L1 -40 6272 6187 441 291 35 26 chr6 132727844 132728038 -56551516 - MIR SINE MIR -4 258 64 4529 64 19 0 chr6 132728124 132728718 -56550836 + L1PA10 LINE L1 5554 6158 -10 421 193 68 121 chr6 132728758 132728965 -56550589 + Charlie7 DNA MER1_type 1 196 -2416 248 217 0 33 chr6 132729000 132729060 -56550494 + T-rich Low_complexity Low_complexity 3 60 0 1232 192 45 60 chr6 132729061 132729394 -56550160 - L1MB8 LINE L1 -1 6177 5850 1582 242 106 50 chr6 132729449 132730217 -56549337 + Charlie7 DNA MER1_type 308 1118 -1494 250 286 118 17 chr6 132731666 132731785 -56547769 - MIR SINE MIR -62 146 16 219 330 54 36 chr6 132733129 132733241 -56546313 - L2 LINE L2 -1 3312 3199 810 285 16 0 chr6 132734119 132734375 -56545179 + MIR SINE MIR 3 262 0 213 254 239 0 chr6 132734447 132734514 -56545040 + L2 LINE L2 3160 3242 -30 26 50 0 0 chr6 132734868 132734908 -56544646 + AT_rich Low_complexity Low_complexity 1 40 0 488 332 105 24 chr6 132735078 132735584 -56543970 + L2 LINE L2 1841 2387 -927 1812 169 0 7 chr6 132735653 132735937 -56543617 - AluJb SINE Alu -30 282 1 201 355 73 47 chr6 132736227 132736461 -56543093 - L2 LINE L2 -213 3059 2820 410 257 152 24 chr6 132736488 132736698 -56542856 - MLT1H1 LTR MaLR -2 593 357 521 263 13 15 chr6 132736757 132736916 -56542638 - MLT1H1 LTR MaLR -359 183 32 222 282 24 73 chr6 132736989 132737113 -56542441 - L2 LINE L2 -557 2757 2640 1112 124 72 0 chr6 132737358 132737567 -56541987 + L1MA6 LINE L1 6077 6300 0 679 293 54 21 chr6 132738268 132738510 -56541044 + MIR SINE MIR 13 262 0 1426 195 68 62 chr6 132739401 132739786 -56539768 + MSTD LTR MaLR 1 387 -9 1627 97 0 72 chr6 132740360 132740553 -56539001 - MER4E LTR ERV1 -8 758 588 1860 59 25 0 chr6 132740553 132740822 -56538732 + L1PA6 LINE L1 5901 6175 0 1627 97 0 72 chr6 132740822 132740905 -56538649 - MER4E LTR ERV1 -178 588 501 338 286 101 66 chr6 132741118 132741345 -56538209 - MIR SINE MIR 0 262 28 2080 163 47 36 chr6 132741506 132742051 -56537503 - MLT2A2 LTR ERVL 0 554 1 2547 65 0 3 chr6 132743059 132743368 -56536186 + AluY SINE Alu 1 308 -3 2759 218 28 28 chr6 132746009 132746661 -56532893 + L1ME1 LINE L1 5507 6158 -8 2113 116 0 19 chr6 132747073 132747384 -56532170 - AluSx SINE Alu -7 305 1 315 65 0 0 chr6 132747526 132747572 -56531982 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr6 132748526 132748548 -56531006 + AT_rich Low_complexity Low_complexity 1 22 0 274 308 83 0 chr6 132748626 132748759 -56530795 + MIR SINE MIR 105 248 -14 227 342 13 65 chr6 132751180 132751335 -56528219 - L2 LINE L2 0 3272 3126 3535 138 25 35 chr6 132751416 132752024 -56527530 - MER7C DNA MER2_type 0 602 1 1964 118 37 19 chr6 132752399 132752721 -56526833 - MER44D DNA MER2_type -1 608 11 1972 151 0 7 chr6 132754558 132754862 -56524692 - AluJb SINE Alu -10 302 1 301 254 24 89 chr6 132754999 132755146 -56524408 - L1ME4a LINE L1 -90 6031 5895 1839 161 30 10 chr6 132755146 132755451 -56524103 - AluJb SINE Alu -1 311 1 301 254 24 89 chr6 132755451 132755472 -56524082 - L1ME4a LINE L1 -226 5895 5874 367 306 73 25 chr6 132755504 132755889 -56523665 - L1ME4a LINE L1 -701 5453 5355 244 200 350 0 chr6 132757189 132757269 -56522285 - MIR SINE MIR -74 188 81 712 295 38 56 chr6 132757271 132757664 -56521890 + L1MCc LINE L1 23 408 -6015 1221 254 101 34 chr6 132758107 132759079 -56520475 + L1MCc LINE L1 1129 2175 -4766 220 205 103 77 chr6 132759086 132759164 -56520390 - MIR SINE MIR -170 92 13 29 60 0 0 chr6 132759229 132759279 -56520275 + AT_rich Low_complexity Low_complexity 1 50 0 507 328 89 8 chr6 132760139 132760386 -56519168 - L3 LINE CR1 -139 1438 1172 601 217 17 0 chr6 132760499 132760614 -56518940 - FRAM SINE Alu -59 117 1 224 308 39 66 chr6 132761193 132761375 -56518179 - L3b LINE CR1 -302 1281 1105 2796 154 48 28 chr6 132763259 132763764 -56515790 - MLT2B2 LTR ERVL 0 515 1 1275 274 83 70 chr6 132763995 132765047 -56514507 + L1MEd LINE L1 330 1279 -4834 366 316 81 63 chr6 132765537 132765920 -56513634 + L1MEd LINE L1 2059 2448 -3948 305 301 35 0 chr6 132766139 132766252 -56513302 - L1M4 LINE L1 -2931 3215 3099 1418 166 50 63 chr6 132766324 132766626 -56512928 + AluJb SINE Alu 1 298 -14 429 70 0 0 chr6 132766640 132766697 -56512857 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 731 179 0 36 chr6 132766704 132766844 -56512710 + AluSq/x SINE Alu 1 135 -177 950 40 3 0 chr6 132767497 132767621 -56511933 + L1PA3 LINE L1 6005 6152 -3 21 0 0 0 chr6 132767621 132767642 -56511912 + AT_rich Low_complexity Low_complexity 1 21 0 234 292 90 0 chr6 132768314 132768403 -56511151 - MER94 DNA DNA -1 133 37 237 327 127 9 chr6 132769918 132770028 -56509526 + L2 LINE L2 3150 3272 0 265 232 58 87 chr6 132770290 132770428 -56509126 + L2 LINE L2 3099 3232 -40 393 257 0 50 chr6 132770766 132770867 -56508687 - L2 LINE L2 -3 3269 3174 2284 105 0 0 chr6 132772388 132772692 -56506862 + AluSq SINE Alu 1 304 -9 2764 166 26 24 chr6 132772782 132773032 -56506522 - L1M2 LINE L1 -495 5817 5569 1805 179 14 3 chr6 132773032 132773329 -56506225 - AluJb SINE Alu -10 302 3 2764 166 26 24 chr6 132773329 132773743 -56505811 - L1M2 LINE L1 -743 5569 5149 279 67 0 0 chr6 132773746 132773791 -56505763 - MER57A LTR ERV1 -2 401 357 2918 117 17 0 chr6 132773791 132774210 -56505344 - MER57B LTR ERV1 -8 426 1 1076 93 7 7 chr6 132774210 132774360 -56505194 - MER57B-int LTR ERV1 0 7537 7388 228 200 80 20 chr6 132774376 132774426 -56505128 - MER70B LTR ERVL -406 172 120 703 146 23 31 chr6 132774434 132774564 -56504990 - LTR54B LTR ERV1 -367 131 3 25614 84 31 23 chr6 132774567 132778344 -56501210 - MER57B-int LTR ERV1 -388 7149 3342 4935 122 19 30 chr6 132778334 132779237 -56500317 - MER57B-int LTR ERV1 -4342 1451 632 * 1298 60 6 6 chr6 132779238 132779406 -56500148 - MER57B-int LTR ERV1 -6577 960 793 * 4456 129 25 9 chr6 132779399 132780068 -56499486 - MER57B-int LTR ERV1 -6857 680 1 2737 145 12 2 chr6 132780072 132780493 -56499061 - MER57B LTR ERV1 -9 425 1 1483 181 3 20 chr6 132780493 132780554 -56499000 - L1M2 LINE L1 -1000 5146 5086 1916 141 0 24 chr6 132780554 132780877 -56498677 + AluSx SINE Alu 1 316 0 1483 181 3 20 chr6 132780877 132781118 -56498436 - L1M2 LINE L1 -1060 5086 4848 501 182 91 30 chr6 132781120 132781252 -56498302 + L1MA9 LINE L1 6135 6274 -38 180 150 0 50 chr6 132781328 132781388 -56498166 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 299 234 75 0 chr6 132782475 132782569 -56496985 + MER94 DNA DNA 6 106 -28 21 0 0 0 chr6 132782652 132782673 -56496881 + AT_rich Low_complexity Low_complexity 1 21 0 1720 254 29 19 chr6 132783012 132783433 -56496121 - MER70B LTR ERVL -150 428 4 680 220 90 53 chr6 132783599 132783899 -56495655 - LTR37A LTR ERV1 0 426 116 493 179 36 163 chr6 132784063 132784259 -56495295 - L1ME LINE L1 -436 5685 5515 528 16 0 0 chr6 132784266 132784327 -56495227 + (CATA)n Simple_repeat Simple_repeat 4 64 0 995 197 45 13 chr6 132784330 132784560 -56494994 - MER31B LTR ERV1 -10 651 220 370 254 62 31 chr6 132784839 132784969 -56494585 - MLT1J1 LTR MaLR -68 378 245 1058 130 0 156 chr6 132784988 132785257 -56494297 - AluJo SINE Alu 0 312 86 580 291 62 35 chr6 132785267 132785494 -56494060 - MLT1J2 LTR MaLR -217 233 1 267 276 0 46 chr6 132785602 132785689 -56493865 + L2 LINE L2 3190 3272 0 2853 154 56 35 chr6 132785727 132786332 -56493222 - L1MB8 LINE L1 -5 6173 5556 1909 167 0 7 chr6 132786336 132786636 -56492918 + AluJo SINE Alu 4 301 -11 800 296 80 34 chr6 132786721 132787072 -56492482 - L2 LINE L2 -20 3293 2927 834 296 73 58 chr6 132787951 132788581 -56490973 - L2 LINE L2 0 3313 2678 460 200 144 0 chr6 132788773 132788898 -56490656 - L1ME3A LINE L1 -1 6169 6027 3971 153 48 66 chr6 132789397 132790302 -56489252 + L1MB4 LINE L1 5281 6168 -12 363 169 0 0 chr6 132792194 132792265 -56487289 + (CA)n Simple_repeat Simple_repeat 1 71 0 272 236 106 41 chr6 132792719 132792842 -56486712 - L1ME4a LINE L1 -5 6116 5986 2180 118 38 10 chr6 132792864 132793496 -56486058 + MER39 LTR ERV1 5 707 0 25 31 0 0 chr6 132793762 132793794 -56485760 + AT_rich Low_complexity Low_complexity 1 32 0 317 322 76 38 chr6 132794675 132794939 -56484615 - MLT1K LTR MaLR -164 424 151 2166 149 43 11 chr6 132794989 132795365 -56484189 + MLT1B LTR MaLR 1 388 -2 1889 126 11 0 chr6 132796528 132796798 -56482756 + AluSq SINE Alu 1 273 -40 889 56 0 16 chr6 132796798 132796924 -56482630 + (GGAA)n Simple_repeat Simple_repeat 3 126 0 218 336 144 7 chr6 132796932 132797078 -56482476 - L3b LINE CR1 -63 1520 1355 421 275 148 29 chr6 132797480 132797838 -56481716 + L1ME3A LINE L1 5496 5906 -215 22 70 0 0 chr6 132798075 132798118 -56481436 + AT_rich Low_complexity Low_complexity 1 43 0 201 288 100 38 chr6 132798231 132798311 -56481243 - L2 LINE L2 0 3313 3229 1488 169 102 14 chr6 132800193 132800477 -56479077 - AluJo SINE Alu -3 309 1 237 65 0 0 chr6 132800586 132800617 -56478937 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 2677 171 38 13 chr6 132801234 132801767 -56477787 + L1MB4 LINE L1 5627 6172 -8 5789 48 7 22 chr6 132803539 132804297 -56475257 + L1PA5 LINE L1 5406 6151 -3 26 50 0 0 chr6 132804297 132804337 -56475217 + AT_rich Low_complexity Low_complexity 1 40 0 483 249 39 39 chr6 132804662 132804843 -56474711 + MER5A DNA MER1_type 6 186 -3 1826 177 96 188 chr6 132805770 132807149 -56472405 - L1MC5 LINE L1 -48 7913 6662 21 0 0 0 chr6 132807252 132807273 -56472281 + AT_rich Low_complexity Low_complexity 1 21 0 191 253 213 13 chr6 132807357 132807432 -56472122 + MIR SINE MIR 87 176 -86 375 255 216 29 chr6 132807432 132807640 -56471914 - MIR SINE MIR 0 262 16 817 191 6 6 chr6 132808508 132808665 -56470889 - AluJb SINE Alu -4 308 152 184 354 0 12 chr6 132808665 132808747 -56470807 - MIR SINE MIR -71 191 111 1936 144 9 11 chr6 132808747 132809095 -56470459 - L1MA4 LINE L1 -1714 4432 4086 * 5099 157 58 16 chr6 132809094 132809796 -56469758 + L1MA4 LINE L1 4439 5110 -1190 1782 60 0 14 chr6 132809796 132810013 -56469541 + AluY SINE Alu 84 297 -14 5099 157 58 16 chr6 132810013 132810607 -56468947 + L1MA4 LINE L1 5110 5677 -623 189 0 0 0 chr6 132810607 132810628 -56468926 + (CA)n Simple_repeat Simple_repeat 2 22 0 5099 157 58 16 chr6 132810628 132811111 -56468443 + L1MA4 LINE L1 5677 6300 0 259 297 11 11 chr6 132811902 132811993 -56467561 - L2 LINE L2 -213 3059 2969 1845 160 31 0 chr6 132812542 132812836 -56466718 + AluJb SINE Alu 1 303 -9 549 304 79 22 chr6 132813702 132813929 -56465625 + MIR SINE MIR 17 256 -6 2254 110 0 3 chr6 132814181 132814489 -56465065 + AluSc SINE Alu 1 307 -2 319 292 67 43 chr6 132814514 132814725 -56464829 + L1ME3 LINE L1 5725 5940 -230 1627 138 87 7 chr6 132814827 132815103 -56464451 + AluJb SINE Alu 6 303 -9 402 287 126 108 chr6 132816229 132816391 -56463163 - L2 LINE L2 -19 3253 3095 2212 104 13 0 chr6 132816391 132816690 -56462864 + AluSp SINE Alu 1 303 -10 402 287 126 108 chr6 132816690 132816861 -56462693 - L2 LINE L2 -177 3095 2914 526 142 7 149 chr6 132817012 132817094 -56462460 + MER5B DNA MER1_type 58 113 -65 2326 89 0 3 chr6 132817094 132817386 -56462168 - AluSc SINE Alu -18 291 1 526 142 7 149 chr6 132817386 132817444 -56462110 + MER5B DNA MER1_type 113 178 0 306 338 180 45 chr6 132817680 132818014 -56461540 - L2 LINE L2 0 3272 2894 1331 242 98 42 chr6 132818306 132818806 -56460748 + MLT1F LTR MaLR 6 533 -9 22 56 0 0 chr6 132820111 132820147 -56459407 + AT_rich Low_complexity Low_complexity 1 36 0 297 0 0 0 chr6 132821446 132821479 -56458075 + (CA)n Simple_repeat Simple_repeat 2 34 0 1854 139 31 3 chr6 132821522 132821810 -56457744 - AluJb SINE Alu -16 296 1 398 295 31 71 chr6 132822362 132822420 -56457134 - MLT1K LTR MaLR -8 580 521 519 211 0 78 chr6 132822420 132822581 -56456973 + FLAM_A SINE Alu 1 151 0 398 295 31 71 chr6 132822581 132822775 -56456779 - MLT1K LTR MaLR -67 521 337 392 331 31 15 chr6 132823255 132823385 -56456169 + L2 LINE L2 3127 3258 -14 412 314 74 69 chr6 132824571 132825234 -56454320 - L2 LINE L2 0 3272 2615 3539 194 77 11 chr6 132825579 132825700 -56453854 - L1MD2 LINE L1 -71 6288 6176 291 28 0 0 chr6 132825700 132825736 -56453818 + (TG)n Simple_repeat Simple_repeat 2 37 0 3539 194 77 11 chr6 132825736 132826461 -56453093 - L1MD2 LINE L1 -183 6176 5386 756 160 0 0 chr6 132827458 132827577 -56451977 + FLAM_C SINE Alu 6 124 -19 1242 180 37 37 chr6 132828349 132828643 -56450911 - MER66B LTR ERV1 0 486 193 196 252 87 10 chr6 132828772 132828875 -56450679 + L2 LINE L2 3112 3222 -91 196 227 23 0 chr6 132830803 132830847 -56448707 + MIR SINE MIR 109 153 -109 207 268 0 0 chr6 132831114 132831155 -56448399 + L2 LINE L2 3214 3254 -18 191 325 65 39 chr6 132831349 132831426 -56448128 + MIR SINE MIR 22 100 -108 30 59 0 0 chr6 132831626 132831677 -56447877 + AT_rich Low_complexity Low_complexity 1 51 0 391 291 140 9 chr6 132831898 132832274 -56447280 + MARNA DNA Mariner 75 529 -57 2309 162 61 48 chr6 132832406 132832901 -56446653 + MLT1D LTR MaLR 5 505 0 1988 155 14 22 chr6 132832931 132833299 -56446255 + MLT1A1 LTR MaLR 1 365 0 739 231 123 36 chr6 132834233 132834510 -56445044 + L2 LINE L2 3009 3309 -4 419 325 170 24 chr6 132834508 132834797 -56444757 - L2 LINE L2 -8 3264 2934 * 2067 112 34 3 chr6 132834811 132835106 -56444448 + AluSx SINE Alu 1 304 -8 1378 145 5 5 chr6 132835125 132835332 -56444222 + AluJb SINE Alu 1 207 -105 652 163 30 0 chr6 132835446 132835581 -56443973 - L1MB1 LINE L1 -17 6172 6034 253 252 113 52 chr6 132835894 132836009 -56443545 - L2 LINE L2 0 3313 3192 1889 302 127 19 chr6 132836077 132836969 -56442585 - L2 LINE L2 -338 2976 1989 669 314 127 40 chr6 132836987 132837658 -56441896 - L2 LINE L2 -855 2459 1731 450 296 194 20 chr6 132837665 132838205 -56441349 - L2 LINE L2 -1145 2169 1536 347 244 12 12 chr6 132838303 132838385 -56441169 + L2 LINE L2 3232 3313 0 1691 178 11 0 chr6 132838428 132838697 -56440857 - AluJo SINE Alu -39 273 2 418 284 46 1 chr6 132839297 132839421 -56440133 + MIR SINE MIR 35 163 -63 252 94 0 0 chr6 132839426 132839458 -56440096 + L2 LINE L2 3225 3256 -16 180 111 0 0 chr6 132839706 132839733 -56439821 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 333 0 0 0 chr6 132840325 132840362 -56439192 + (TG)n Simple_repeat Simple_repeat 1 37 0 22 35 0 0 chr6 132840700 132840729 -56438825 + AT_rich Low_complexity Low_complexity 1 29 0 489 123 0 0 chr6 132840847 132840920 -56438634 - Tigger5 DNA MER2_type 0 2323 2251 285 164 18 18 chr6 132840889 132840944 -56438610 - Tigger5 DNA MER2_type -2268 55 1 * 201 39 0 0 chr6 132841268 132841294 -56438260 + (TC)n Simple_repeat Simple_repeat 1 26 0 326 321 142 44 chr6 132842676 132843043 -56436511 + L1ME LINE L1 4655 5057 -1089 22 35 0 0 chr6 132843183 132843212 -56436342 + AT_rich Low_complexity Low_complexity 1 29 0 354 357 51 8 chr6 132843241 132843614 -56435940 + L1ME LINE L1 5383 5771 -350 4133 187 15 11 chr6 132843624 132844503 -56435051 + L1MB7 LINE L1 5294 6175 -9 21 0 0 0 chr6 132844550 132844571 -56434983 + AT_rich Low_complexity Low_complexity 1 21 0 251 283 133 17 chr6 132844590 132844710 -56434844 + L2 LINE L2 3139 3272 0 305 376 0 23 chr6 132844717 132844850 -56434704 + L2 LINE L2 3143 3272 0 246 314 25 2 chr6 132846678 132846810 -56432744 + MIR SINE MIR 29 185 -77 813 140 0 42 chr6 132846909 132847052 -56432502 + FLAM_C SINE Alu 1 137 -6 2145 111 4 0 chr6 132847146 132847460 -56432094 - AluSx SINE Alu 0 315 1 207 0 0 0 chr6 132847781 132847804 -56431750 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 329 289 52 0 chr6 132848119 132848216 -56431338 + MIR3 SINE MIR 68 169 -39 180 339 0 0 chr6 132848415 132848471 -56431083 - L2 LINE L2 0 3272 3217 243 257 50 71 chr6 132849147 132849287 -56430267 - MIR SINE MIR -70 192 56 247 338 88 25 chr6 132849560 132849904 -56429650 - L2 LINE L2 -199 3073 2412 15471 58 3 3 chr6 132850011 132852057 -56427497 + L1P LINE L1 136 2180 -3966 7267 75 2 0 chr6 132852157 132853628 -56425926 - L1PA7 LINE L1 -327 5827 4354 185 311 78 0 chr6 132854517 132854607 -56424947 + L2 LINE L2 2690 2786 -528 193 313 104 0 chr6 132855292 132855359 -56424195 + L2 LINE L2 3235 3308 -5 1226 246 134 39 chr6 132855463 132855927 -56423627 + L2 LINE L2 2244 2751 -563 380 202 83 0 chr6 132855923 132856007 -56423547 + L2 LINE L2 3223 3313 0 * 237 370 37 15 chr6 132856203 132856338 -56423216 + MIR3 SINE MIR 70 207 -1 28 48 0 0 chr6 132856948 132856990 -56422564 + AT_rich Low_complexity Low_complexity 1 42 0 212 197 0 26 chr6 132857654 132857730 -56421824 + CT-rich Low_complexity Low_complexity 4 77 0 335 282 50 39 chr6 132857766 132857947 -56421607 - L1MC4a LINE L1 -1925 5883 5701 201 383 0 82 chr6 132858543 132858726 -56420828 + L2 LINE L2 296 463 -2851 239 384 53 23 chr6 132858798 132859194 -56420360 + L2 LINE L2 542 949 -2365 249 316 58 53 chr6 132859867 132860057 -56419497 - MIR SINE MIR -51 211 21 23 0 0 0 chr6 132861270 132861293 -56418261 + AT_rich Low_complexity Low_complexity 1 23 0 2436 91 0 0 chr6 132864362 132864670 -56414884 - AluSg SINE Alu -2 308 1 21 71 0 0 chr6 132865238 132865280 -56414274 + AT_rich Low_complexity Low_complexity 1 42 0 619 233 38 0 chr6 132865397 132865556 -56413998 + L1ME LINE L1 5596 5760 -404 191 203 0 87 chr6 132865841 132865910 -56413644 + L2 LINE L2 3164 3226 -87 2109 112 3 3 chr6 132866306 132866601 -56412953 + AluSx SINE Alu 1 295 -17 1155 126 6 11 chr6 132866615 132866790 -56412764 + AluSg/x SINE Alu 136 309 -3 710 187 0 52 chr6 132866798 132866932 -56412622 + FLAM_A SINE Alu 1 127 -6 492 217 103 103 chr6 132867227 132867430 -56412124 - MIR SINE MIR -2 260 58 1789 176 78 51 chr6 132867619 132868109 -56411445 - MLT1D LTR MaLR -2 503 1 503 269 41 0 chr6 132868219 132868390 -56411164 - L1MC4 LINE L1 -508 7534 7357 729 299 181 15 chr6 132868419 132868894 -56410660 + L1MEd LINE L1 268 821 -5298 614 197 36 0 chr6 132868957 132869094 -56410460 + L1ME3A LINE L1 6001 6142 -28 1999 154 0 3 chr6 132869099 132869391 -56410163 - AluSx SINE Alu -21 291 1 223 240 0 20 chr6 132872004 132872054 -56407500 + GA-rich Low_complexity Low_complexity 6 54 0 311 228 126 89 chr6 132872428 132872753 -56406801 + L1MEd LINE L1 919 1255 -4864 250 283 75 0 chr6 132872851 132872957 -56406597 + HAL1 LINE L1 1474 1587 -920 814 197 36 14 chr6 132873206 132873429 -56406125 - L1M4 LINE L1 -2184 3962 3735 25 65 0 0 chr6 132873440 132873486 -56406068 + AT_rich Low_complexity Low_complexity 1 46 0 285 233 19 19 chr6 132873504 132873607 -56405947 - L1ME LINE L1 -4992 1269 1167 809 106 0 0 chr6 132873607 132873720 -56405834 - AluSg/x SINE Alu -6 306 194 200 303 11 22 chr6 132873721 132873810 -56405744 + T-rich Low_complexity Low_complexity 2 89 0 1679 167 148 16 chr6 132873817 132874195 -56405359 - MSTA LTR MaLR 0 428 1 295 248 86 20 chr6 132874259 132874457 -56405097 - L1ME LINE L1 -5076 994 784 1435 188 47 0 chr6 132874643 132875077 -56404477 - L1MC/D LINE L1 -743 5403 5132 1587 187 34 39 chr6 132875552 132875959 -56403595 - LTR37A LTR ERV1 -3 423 19 1509 199 3 30 chr6 132876001 132876303 -56403251 - AluJo SINE Alu -18 294 1 1978 129 20 39 chr6 132876401 132876757 -56402797 + THE1B LTR MaLR 1 349 -15 1774 168 46 7 chr6 132877054 132877339 -56402215 + AluSx SINE Alu 1 296 -16 523 248 22 22 chr6 132877386 132877523 -56402031 + L2 LINE L2 3176 3312 -1 201 296 19 0 chr6 132877795 132877849 -56401705 + MER5A DNA MER1_type 4 58 -131 273 54 0 0 chr6 132877849 132877886 -56401668 - L1MA4 LINE L1 -547 5744 5708 1810 152 12 0 chr6 132877903 132878225 -56401329 + L1MA4 LINE L1 5741 6066 -234 4110 171 64 18 chr6 132878225 132878964 -56400590 + L1 LINE L1 3 786 -4542 180 0 0 0 chr6 132878964 132878984 -56400570 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4110 171 64 18 chr6 132878984 132879075 -56400479 + L1 LINE L1 786 871 -4457 7495 153 67 12 chr6 132879077 132880111 -56399443 + L1M1 LINE L1 1158 2283 -5282 2242 122 16 0 chr6 132880111 132880414 -56399140 + AluSx SINE Alu 1 308 -4 7495 153 67 12 chr6 132880414 132880714 -56398840 + L1M1 LINE L1 2283 2565 -5000 * 13968 173 28 12 chr6 132880713 132881688 -56397866 + L1M1 LINE L1 2845 3803 -3762 2445 107 19 16 chr6 132881688 132882062 -56397492 + THE1C LTR MaLR 1 375 0 13968 173 28 12 chr6 132882062 132884995 -56394559 + L1M1 LINE L1 3803 6816 -749 1582 188 0 58 chr6 132884995 132885324 -56394230 + AluJb SINE Alu 1 310 -2 5743 105 14 22 chr6 132885362 132886322 -56393232 + L1MA2 LINE L1 5352 6303 -1 5310 176 21 9 chr6 132886321 132887438 -56392116 + L1 LINE L1 3426 4555 -1773 * 1178 142 97 0 chr6 132887438 132887659 -56391895 + L1MA4 LINE L1 6053 6300 0 254 240 260 0 chr6 132887662 132887758 -56391796 + MER5A DNA MER1_type 63 183 -6 335 269 0 0 chr6 132887989 132888067 -56391487 - MIR3 SINE MIR -12 196 119 14507 91 15 0 chr6 132888350 132891212 -56388342 - L1PA7 LINE L1 -1 6153 3252 2663 89 16 11 chr6 132891212 132891591 -56387963 - L1PA6 LINE L1 -1 6153 5770 41868 40 2 1 chr6 132891591 132897725 -56381829 - L1PA3 LINE L1 -5 6150 12 2479 60 40 0 chr6 132897737 132898084 -56381470 - L1PA6 LINE L1 -373 5781 5421 2262 96 0 0 chr6 132898325 132898650 -56380904 - AluSx SINE Alu 0 325 1 301 292 90 7 chr6 132900387 132900531 -56379023 - MIR3 SINE MIR -13 195 40 1375 163 152 4 chr6 132900717 132900987 -56378567 + AluSx SINE Alu 1 310 -2 1093 199 9 18 chr6 132901163 132901389 -56378165 + MER58A DNA MER1_type 1 224 0 32 26 0 0 chr6 132901777 132901816 -56377738 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr6 132902278 132902299 -56377255 + (TG)n Simple_repeat Simple_repeat 1 21 0 33885 102 11 11 chr6 132902388 132908529 -56371025 - L1PA7 LINE L1 -1 6153 11 1214 107 5 0 chr6 132908536 132908742 -56370812 - L1P LINE L1 -2879 3267 3061 261 271 0 0 chr6 132909783 132909842 -56369712 - L2 LINE L2 -221 3051 2993 227 128 154 0 chr6 132910232 132910271 -56369283 - L2 LINE L2 -3 3310 3266 297 127 55 18 chr6 132910723 132910778 -56368776 - L2 LINE L2 -27 3286 3230 189 0 0 0 chr6 132911483 132911504 -56368050 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2350 108 0 10 chr6 132911525 132911839 -56367715 - AluSx SINE Alu 0 312 2 29 94 0 0 chr6 132913863 132913948 -56365606 + AT_rich Low_complexity Low_complexity 1 85 0 353 273 31 8 chr6 132914127 132914255 -56365299 + MLT2F LTR ERVL 20 150 -513 1596 162 64 0 chr6 132914272 132914600 -56364954 - L1MA7 LINE L1 -4 6287 5939 6476 72 19 0 chr6 132914607 132916043 -56363511 - L1PA13 LINE L1 -16 6798 5349 21 0 0 0 chr6 132916046 132916067 -56363487 + AT_rich Low_complexity Low_complexity 1 21 0 1584 121 4 50 chr6 132916086 132916326 -56363228 - AluSq SINE Alu -84 229 1 11493 155 19 88 chr6 132916327 132916584 -56362970 - L1PA13 LINE L1 -1434 5363 5090 2386 91 3 0 chr6 132916584 132916880 -56362674 - AluSp SINE Alu -16 297 1 11493 155 19 88 chr6 132916880 132919695 -56359859 - L1PA13 LINE L1 -1707 5090 2512 2325 103 3 0 chr6 132919695 132919996 -56359558 - AluSp SINE Alu -11 302 1 11493 155 19 88 chr6 132919996 132920052 -56359502 - L1PA13 LINE L1 -4285 2512 2454 3823 244 223 2 chr6 132920046 132921212 -56358342 - L1PA13 LINE L1 -5017 1770 347 * 5434 168 20 22 chr6 132921213 132922702 -56356852 - L1PA12 LINE L1 -5575 2006 5 747 273 115 75 chr6 132922718 132923213 -56356341 + MLT2F LTR ERVL 148 662 -1 371 252 84 7 chr6 132923238 132923381 -56356173 + ERVL-F LTR ERVL 23 176 -5588 5156 281 69 29 chr6 132923659 132925856 -56353698 + ERVL-F LTR ERVL 508 2863 -2901 2708 257 55 15 chr6 132925903 132926709 -56352845 + ERVL-F LTR ERVL 3177 4014 -1750 22 0 0 0 chr6 132927084 132927106 -56352448 + AT_rich Low_complexity Low_complexity 1 22 0 222 257 0 95 chr6 132928830 132928904 -56350650 - L2 LINE L2 -10 3262 3196 286 183 0 17 chr6 132929206 132929266 -56350288 - MLT1K LTR MaLR -62 526 468 295 245 83 108 chr6 132929407 132929648 -56349906 - MLT1K LTR MaLR -339 249 15 1194 191 71 31 chr6 132929742 132930092 -56349462 + MER63B DNA MER1_type 8 371 -65 645 197 13 46 chr6 132932602 132932754 -56346800 - L2 LINE L2 0 3313 3167 950 218 52 109 chr6 132933215 132933582 -56345972 - MLT1B LTR MaLR -44 346 1 1841 188 0 7 chr6 132934043 132934336 -56345218 + AluJo SINE Alu 1 291 -21 575 290 80 18 chr6 132934568 132934861 -56344693 - L1ME3A LINE L1 -233 5937 5664 1988 172 17 6 chr6 132934861 132935222 -56344332 + MLT1A1 LTR MaLR 1 365 0 575 290 80 18 chr6 132935222 132935462 -56344092 - L1ME3A LINE L1 -506 5664 5343 298 334 31 18 chr6 132935479 132935868 -56343686 + L1ME3A LINE L1 4939 5332 -814 438 308 0 23 chr6 132935938 132936071 -56343483 + MIR SINE MIR 13 142 -120 1710 161 51 20 chr6 132936079 132936303 -56343251 + L1MB7 LINE L1 5749 5989 -195 1285 129 123 101 chr6 132936303 132936465 -56343089 + MLT1A1 LTR MaLR 1 158 -207 2303 128 0 0 chr6 132936465 132936777 -56342777 - AluSx SINE Alu 0 312 1 1285 129 123 101 chr6 132936777 132936971 -56342583 + MLT1A1 LTR MaLR 158 365 0 1710 161 51 20 chr6 132936971 132937100 -56342454 + L1MB7 LINE L1 5989 6113 -71 363 321 107 0 chr6 132937257 132937388 -56342166 - MIR SINE MIR 0 262 118 261 0 0 0 chr6 132937443 132937472 -56342082 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2283 83 0 0 chr6 132937474 132937752 -56341802 - AluSc SINE Alu -31 278 1 326 280 121 30 chr6 132938734 132938866 -56340688 - MIR SINE MIR -108 154 11 1106 272 137 15 chr6 132939524 132940253 -56339301 + L2 LINE L2 2443 3263 -50 183 80 0 0 chr6 132940260 132940285 -56339269 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 1384 178 46 15 chr6 132940486 132940745 -56338809 + Tigger7 DNA MER2_type 1 267 -2220 522 176 0 0 chr6 132940761 132940852 -56338702 + Tigger7 DNA MER2_type 2397 2487 0 324 303 79 14 chr6 132941021 132941340 -56338214 - MLT1J1 LTR MaLR -13 433 41 4220 158 45 15 chr6 132941392 132942363 -56337191 - L1MB7 LINE L1 -11 6173 5173 268 200 31 31 chr6 132942364 132942429 -56337125 - MIR SINE MIR -113 149 85 605 226 89 92 chr6 132942429 132942822 -56336732 + MLT1J1 LTR MaLR 58 450 0 463 306 149 9 chr6 132942835 132943057 -56336497 - L3 LINE CR1 -113 1464 1212 1377 98 0 0 chr6 132944503 132944696 -56334858 - L1PB1 LINE L1 0 6151 5959 6052 196 5 14 chr6 132945528 132947575 -56331979 - L1PA15 LINE L1 -2 6163 4098 953 186 5 10 chr6 132947575 132947779 -56331775 - L1P LINE L1 -1312 4834 4632 1630 196 52 8 chr6 132947789 132948157 -56331397 - L1PA15 LINE L1 -2039 4107 3724 468 375 94 3 chr6 132948215 132948554 -56331000 - L2 LINE L2 -1135 2179 1810 200 234 0 0 chr6 132948555 132948602 -56330952 - L2 LINE L2 -2083 1231 1185 375 355 43 22 chr6 132948890 132949121 -56330433 + MIR SINE MIR 20 255 -7 1532 189 11 7 chr6 132949942 132950249 -56329305 + AluJo SINE Alu 1 308 0 1981 166 3 0 chr6 132950249 132950556 -56328998 + AluJb SINE Alu 2 309 -3 220 194 0 42 chr6 132951225 132951297 -56328257 + CT-rich Low_complexity Low_complexity 1 69 0 272 333 54 0 chr6 132951381 132951474 -56328080 + MIR SINE MIR 48 145 -63 593 224 66 15 chr6 132951508 132951610 -56327944 - L1ME LINE L1 -702 5460 5365 351 0 0 0 chr6 132951610 132951649 -56327905 + (TG)n Simple_repeat Simple_repeat 2 40 0 593 224 66 15 chr6 132951649 132951788 -56327766 - L1ME LINE L1 -797 5365 5206 961 182 28 0 chr6 132951788 132951964 -56327590 - AluJb SINE Alu -11 301 121 4574 250 52 21 chr6 132951964 132952407 -56327147 - L1ME LINE L1 -1021 5125 4697 885 203 14 28 chr6 132952407 132952619 -56326935 + MER3 DNA MER1_type 1 209 0 4574 250 52 21 chr6 132952619 132953879 -56325675 - L1ME LINE L1 -1449 4697 3369 35 24 0 0 chr6 132953879 132953921 -56325633 + AT_rich Low_complexity Low_complexity 1 42 0 5904 211 62 12 chr6 132953949 132954609 -56324945 - L1MC/D LINE L1 -555 5723 5097 2417 28 41 0 chr6 132954609 132954899 -56324655 - AluY SINE Alu -9 302 1 5904 211 62 12 chr6 132954899 132956513 -56323041 - L1MC/D LINE L1 -1181 5097 3334 2020 169 13 69 chr6 132956552 132957001 -56322553 + MLT2B3 LTR ERVL 1 424 -130 4718 205 89 34 chr6 132957038 132959422 -56320132 - L1MCa LINE L1 -2848 3232 576 1262 173 43 30 chr6 132959422 132959722 -56319832 - L1MB4 LINE L1 0 6180 5877 4718 205 89 34 chr6 132959722 132960282 -56319272 - L1MCa LINE L1 -5504 576 48 253 381 0 24 chr6 132960394 132960520 -56319034 - MER5A DNA MER1_type -30 159 37 224 245 19 19 chr6 132960571 132960624 -56318930 + MER5A DNA MER1_type 49 101 -88 400 330 161 35 chr6 132960778 132960904 -56318650 - L2 LINE L2 -76 3237 3128 811 209 17 0 chr6 132960904 132961076 -56318478 + MER5B DNA MER1_type 1 175 -3 400 330 161 35 chr6 132961076 132961297 -56318257 - L2 LINE L2 -185 3128 2846 1679 140 16 0 chr6 132962260 132962510 -56317044 + LTR18A LTR ERVL 1 254 -103 826 176 7 0 chr6 132962581 132962723 -56316831 + LTR18A LTR ERVL 215 357 0 405 263 59 20 chr6 132964043 132964195 -56315359 + LTR67 LTR ERVL 11 168 -389 306 299 36 42 chr6 132964285 132964452 -56315102 + LTR67 LTR ERVL 352 517 -40 2244 107 0 35 chr6 132965194 132965504 -56314050 - AluSx SINE Alu -12 300 2 393 272 7 68 chr6 132965649 132965796 -56313758 - MIR SINE MIR -112 150 13 186 278 51 97 chr6 132966763 132966979 -56312575 + L2 LINE L2 2463 2668 -646 351 221 0 0 chr6 132967080 132967166 -56312388 + GA-rich Low_complexity Low_complexity 4 89 0 441 330 128 19 chr6 132967171 132967538 -56312016 + L2 LINE L2 2852 3258 -14 1529 152 37 57 chr6 132967689 132967986 -56311568 + AluJb SINE Alu 1 291 -21 214 292 69 14 chr6 132968092 132968164 -56311390 + L2 LINE L2 3215 3290 -23 372 259 56 28 chr6 132968180 132968323 -56311231 - MIR3 SINE MIR -61 147 1 398 213 0 0 chr6 132968935 132969010 -56310544 - MER81 DNA DNA -38 76 2 504 212 18 0 chr6 132969010 132969123 -56310431 - MLT1J2 LTR MaLR -288 162 48 631 286 57 0 chr6 132969640 132969832 -56309722 - MIR SINE MIR -12 250 48 203 204 19 0 chr6 132970062 132970116 -56309438 + (TG)n Simple_repeat Simple_repeat 1 55 0 1036 277 58 33 chr6 132970160 132970589 -56308965 + LTR16A LTR ERVL 8 447 -3 605 272 70 91 chr6 132971250 132971691 -56307863 + MLT1J2 LTR MaLR 1 432 -18 223 361 56 19 chr6 132971691 132971799 -56307755 + L2 LINE L2 2730 2841 -473 1141 226 53 20 chr6 132971858 132972159 -56307395 - LTR40a LTR ERVL -208 311 1 394 228 59 0 chr6 132972163 132972264 -56307290 + MIR SINE MIR 156 262 0 2484 87 8 75 chr6 132972649 132973051 -56306503 + THE1C LTR MaLR 1 375 0 29654 107 12 59 chr6 132973113 132978064 -56301490 + L1PA7 LINE L1 12 4580 -1574 2065 125 3 0 chr6 132978064 132978359 -56301195 + AluSq SINE Alu 1 296 -17 29654 107 12 59 chr6 132978359 132979860 -56299694 + L1PA7 LINE L1 4580 6150 -4 229 296 59 72 chr6 132980720 132980872 -56298682 + MIR3 SINE MIR 38 187 -21 501 124 0 11 chr6 132981599 132981688 -56297866 - L1MB4 LINE L1 0 6180 6093 231 269 0 15 chr6 132981845 132981912 -56297642 + CT-rich Low_complexity Low_complexity 4 69 0 245 252 171 27 chr6 132983122 132983233 -56296321 + LTR67 LTR ERVL 431 557 0 289 242 179 66 chr6 132983802 132984021 -56295533 - MLT1C LTR MaLR -207 260 18 971 177 0 6 chr6 132985163 132985321 -56294233 - AluJb SINE Alu 0 312 156 1261 156 34 10 chr6 132985335 132985540 -56294014 - AluJb SINE Alu -102 210 1 2926 86 25 0 chr6 132985602 132986010 -56293544 + MLT2A2 LTR ERVL 1 418 -35 291 114 0 43 chr6 132986010 132986080 -56293474 + (TA)n Simple_repeat Simple_repeat 2 68 0 384 113 0 0 chr6 132986084 132986146 -56293408 + MLT2A2 LTR ERVL 392 453 0 218 119 0 24 chr6 132986342 132986384 -56293170 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 24 67 0 0 chr6 132986943 132986988 -56292566 + AT_rich Low_complexity Low_complexity 1 45 0 207 311 0 56 chr6 132987161 132987251 -56292303 - L2 LINE L2 -93 3220 3136 553 271 33 7 chr6 132987446 132987597 -56291957 - L3 LINE CR1 -146 1431 1277 537 324 29 67 chr6 132987600 132987737 -56291817 - L2 LINE L2 -5 3267 3126 2167 103 0 0 chr6 132987737 132988018 -56291536 - AluSg SINE Alu -19 291 11 537 324 29 67 chr6 132988018 132988391 -56291163 - L2 LINE L2 -146 3126 2778 602 274 94 5 chr6 132988423 132988635 -56290919 - L2 LINE L2 0 3313 3083 188 310 193 14 chr6 132988753 132988898 -56290656 - L2 LINE L2 -623 2691 2521 21 57 0 0 chr6 132989011 132989046 -56290508 + AT_rich Low_complexity Low_complexity 1 35 0 1425 109 64 0 chr6 132989650 132989852 -56289702 + AluSx SINE Alu 1 215 -97 1747 295 116 6 chr6 132989895 132990739 -56288815 - L2 LINE L2 -446 2868 1932 596 235 77 45 chr6 132991202 132991423 -56288131 + MIR SINE MIR 31 258 -4 2403 70 3 10 chr6 132993029 132993328 -56286226 - AluSg SINE Alu -13 297 1 327 25 0 0 chr6 132993890 132993930 -56285624 + (CA)n Simple_repeat Simple_repeat 2 41 0 333 307 18 0 chr6 132996093 132996207 -56283347 - MER94 DNA DNA -4 130 15 21 82 0 0 chr6 132996661 132996710 -56282844 + AT_rich Low_complexity Low_complexity 1 49 0 256 188 12 12 chr6 132996775 132996855 -56282699 + GA-rich Low_complexity Low_complexity 3 82 0 232 296 14 14 chr6 132997154 132997225 -56282329 - L2 LINE L2 -1 3271 3201 2591 58 0 0 chr6 133000372 133000680 -56278874 + AluY SINE Alu 1 308 -3 225 180 0 0 chr6 133001532 133001582 -56277972 + (TAA)n Simple_repeat Simple_repeat 1 50 0 248 376 38 13 chr6 133002944 133003101 -56276453 - L2 LINE L2 0 3272 3112 469 316 119 0 chr6 133004011 133004188 -56275366 + MIR SINE MIR 48 245 -17 1918 162 3 10 chr6 133004295 133004603 -56274951 - AluJb SINE Alu -6 306 1 192 274 0 16 chr6 133004922 133004984 -56274570 - L2 LINE L2 -2778 536 476 27 49 0 0 chr6 133005575 133005616 -56273938 + AT_rich Low_complexity Low_complexity 1 41 0 617 133 242 16 chr6 133006769 133006897 -56272657 + FRAM SINE Alu 1 155 -21 366 23 0 0 chr6 133006898 133006941 -56272613 + (CA)n Simple_repeat Simple_repeat 2 44 0 3827 191 82 15 chr6 133009747 133010658 -56268896 + ERVL-D LTR ERVL 4786 5757 -7 1754 151 68 37 chr6 133010658 133011017 -56268537 + MLT2D LTR ERVL 1 374 -40 405 0 0 0 chr6 133011017 133011062 -56268492 + (CA)n Simple_repeat Simple_repeat 2 46 0 1754 151 68 37 chr6 133011062 133011085 -56268469 + MLT2D LTR ERVL 374 395 -19 727 316 33 4 chr6 133011206 133011450 -56268104 + MIR SINE MIR 12 262 0 890 178 20 0 chr6 133011717 133011863 -56267691 - FAM SINE Alu -1 48 1 603 209 22 7 chr6 133012033 133012171 -56267383 + MLT1D LTR MaLR 1 140 -365 792 168 68 6 chr6 133012171 133012332 -56267222 + MLT1B LTR MaLR 1 171 -219 675 165 318 0 chr6 133014250 133014420 -56265134 + MER58A DNA MER1_type 1 224 0 24 67 0 0 chr6 133014516 133014561 -56264993 + AT_rich Low_complexity Low_complexity 1 45 0 312 296 17 61 chr6 133014910 133015025 -56264529 - L2 LINE L2 -5 3308 3199 28 29 0 0 chr6 133015283 133015318 -56264236 + AT_rich Low_complexity Low_complexity 1 35 0 1666 159 49 55 chr6 133015706 133016051 -56263503 + MER2 DNA MER2_type 2 344 0 463 306 59 64 chr6 133016072 133016251 -56263303 - MIR SINE MIR -2 260 81 1666 207 85 17 chr6 133016251 133016724 -56262830 + Charlie4a DNA MER1_type 1 505 -3 463 306 59 64 chr6 133016724 133016763 -56262791 - MIR SINE MIR -181 81 43 1736 173 3 19 chr6 133016910 133017217 -56262337 - AluJb SINE Alu -9 303 2 2636 143 24 5 chr6 133017878 133018296 -56261258 - MSTB LTR MaLR 0 426 1 334 174 48 0 chr6 133018321 133018488 -56261066 + (TA)n Simple_repeat Simple_repeat 2 176 0 332 270 90 18 chr6 133018745 133018967 -56260587 + HAL1b LINE L1 597 834 -514 833 201 162 42 chr6 133019592 133019814 -56259740 + MLT1J2 LTR MaLR 1 266 -184 893 211 86 14 chr6 133019814 133020023 -56259531 - MER58A DNA MER1_type 0 224 1 833 201 162 42 chr6 133020023 133020084 -56259470 + MLT1J2 LTR MaLR 266 318 -132 190 260 20 0 chr6 133020792 133020842 -56258712 + L2 LINE L2 3252 3302 -11 29 28 0 0 chr6 133020856 133020892 -56258662 + AT_rich Low_complexity Low_complexity 1 36 0 244 261 78 78 chr6 133022102 133022217 -56257337 - MIR SINE MIR -140 122 8 256 223 54 62 chr6 133022427 133022503 -56257051 - MER94 DNA DNA -5 129 53 2300 169 122 4 chr6 133022503 133022954 -56256600 + MLT1D LTR MaLR 1 504 -1 256 223 54 62 chr6 133022954 133022989 -56256565 - MER94 DNA DNA -81 53 19 371 269 131 6 chr6 133023697 133023856 -56255698 - L3 LINE CR1 -114 1463 1285 343 211 202 0 chr6 133023856 133023960 -56255594 + MER5B DNA MER1_type 1 125 -53 2171 104 0 0 chr6 133023961 133024275 -56255279 - AluSx SINE Alu 0 314 1 807 168 24 9 chr6 133024533 133024761 -56254793 + L1MD1 LINE L1 5129 5360 -805 387 0 0 0 chr6 133024825 133024868 -56254686 + (TG)n Simple_repeat Simple_repeat 2 44 0 2258 112 0 0 chr6 133025018 133025312 -56254242 + AluSg SINE Alu 1 294 -16 25 51 0 0 chr6 133025535 133025574 -56253980 + AT_rich Low_complexity Low_complexity 1 39 0 612 215 139 0 chr6 133026021 133026179 -56253375 + MER20 DNA MER1_type 40 219 0 391 196 121 110 chr6 133026247 133026420 -56253134 + MER5B DNA MER1_type 2 176 -2 24 0 0 0 chr6 133026518 133026542 -56253012 + AT_rich Low_complexity Low_complexity 1 24 0 3055 153 41 51 chr6 133026675 133027279 -56252275 + L1MD1 LINE L1 5565 6163 -79 4234 111 3 7 chr6 133027279 133027891 -56251663 + MER4B LTR ERV1 1 610 0 3055 153 41 51 chr6 133027891 133027971 -56251583 + L1MD1 LINE L1 6163 6242 0 424 271 28 14 chr6 133028436 133028580 -56250974 - MER5A DNA MER1_type 0 189 44 1560 121 62 33 chr6 133029139 133029291 -56250263 + L1MA9 LINE L1 5993 6139 -173 363 23 0 0 chr6 133029291 133029335 -56250219 + (CA)n Simple_repeat Simple_repeat 1 44 0 1560 121 62 33 chr6 133029335 133029489 -56250065 + L1MA9 LINE L1 6139 6308 -4 376 255 117 0 chr6 133030012 133030157 -56249397 + MER117 DNA MER1_type 2 163 -34 1202 336 103 23 chr6 133032641 133033567 -56245987 - L2 LINE L2 0 3272 2257 320 276 173 8 chr6 133034151 133034278 -56245276 - MIR SINE MIR -6 256 109 782 249 163 23 chr6 133034278 133034720 -56244834 - LTR33A LTR ERVL -19 504 1 204 153 0 28 chr6 133034728 133034767 -56244787 - MIR SINE MIR -89 119 81 270 0 0 0 chr6 133034888 133034905 -56244649 + (GA)n Simple_repeat Simple_repeat 1 47 0 270 0 0 0 chr6 133034905 133034935 -56244619 + (GA)n Simple_repeat Simple_repeat 2 31 0 294 262 14 103 chr6 133035140 133035228 -56244326 + MIR3 SINE MIR 61 137 -71 2037 122 28 0 chr6 133035228 133035515 -56244039 - AluSx SINE Alu -17 295 1 294 262 14 103 chr6 133035515 133035582 -56243972 + MIR3 SINE MIR 137 208 0 1392 85 14 22 chr6 133036804 133037027 -56242527 - L1MA4 LINE L1 -5 6295 6075 721 247 21 11 chr6 133038993 133039179 -56240375 - MER5A DNA MER1_type 0 189 2 850 103 0 8 chr6 133040968 133041085 -56238469 - AluSq SINE Alu -65 248 133 1982 121 7 3 chr6 133041413 133041718 -56237836 + AluSq SINE Alu 1 306 0 24 0 0 0 chr6 133043032 133043056 -56236498 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr6 133043120 133043155 -56236399 + AT_rich Low_complexity Low_complexity 1 35 0 369 109 0 0 chr6 133043333 133043388 -56236166 + (TA)n Simple_repeat Simple_repeat 2 56 0 574 272 156 0 chr6 133044089 133044269 -56235285 + MIR SINE MIR 49 256 -6 415 259 27 9 chr6 133044605 133044717 -56234837 - MER81 DNA DNA 0 114 1 418 297 131 11 chr6 133044813 133044988 -56234566 + MIR SINE MIR 53 248 -14 1551 173 31 0 chr6 133046076 133046331 -56233223 - AluJo SINE Alu -23 289 27 2388 110 0 0 chr6 133047201 133047509 -56232045 + AluSx SINE Alu 1 308 -4 213 39 0 0 chr6 133047509 133047535 -56232019 + (TA)n Simple_repeat Simple_repeat 2 27 0 201 313 60 0 chr6 133047779 133047846 -56231708 + L2 LINE L2 3171 3241 -31 * 427 305 116 18 chr6 133047840 133048004 -56231550 + MIR3 SINE MIR 19 198 -10 305 250 80 0 chr6 133048757 133048845 -56230709 - L2 LINE L2 0 3272 3178 403 252 63 0 chr6 133049910 133050021 -56229533 + MIR SINE MIR 35 152 -110 247 338 88 25 chr6 133050311 133050655 -56228899 + L2 LINE L2 2412 3073 -199 243 257 50 71 chr6 133050928 133051068 -56228486 + MIR SINE MIR 56 192 -70 180 339 0 0 chr6 133051744 133051800 -56227754 + L2 LINE L2 3217 3272 0 329 289 52 0 chr6 133051999 133052096 -56227458 - MIR3 SINE MIR -39 169 68 207 0 0 0 chr6 133052411 133052434 -56227120 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2146 111 4 0 chr6 133052755 133053069 -56226485 + AluSx SINE Alu 1 315 0 826 133 0 42 chr6 133053163 133053306 -56226248 - FLAM_C SINE Alu -6 137 1 246 314 25 2 chr6 133053405 133053537 -56226017 - MIR SINE MIR -77 185 29 305 376 0 23 chr6 133055365 133055498 -56224056 - L2 LINE L2 0 3272 3143 251 283 133 17 chr6 133055505 133055625 -56223929 - L2 LINE L2 0 3272 3139 21 0 0 0 chr6 133055644 133055665 -56223889 + AT_rich Low_complexity Low_complexity 1 21 0 4139 187 15 10 chr6 133055712 133056590 -56222964 - L1MB7 LINE L1 -9 6175 5294 354 357 51 8 chr6 133056600 133056973 -56222581 - L1ME LINE L1 -350 5771 5383 22 35 0 0 chr6 133057002 133057031 -56222523 + AT_rich Low_complexity Low_complexity 1 29 0 326 321 142 44 chr6 133057171 133057538 -56222016 - L1ME LINE L1 -1089 5057 4655 237 33 0 0 chr6 133058920 133058950 -56220604 + (GA)n Simple_repeat Simple_repeat 1 30 0 285 164 18 18 chr6 133059274 133059329 -56220225 + Tigger5 DNA MER2_type 1 55 -2268 * 489 123 0 0 chr6 133059298 133059371 -56220183 + Tigger5 DNA MER2_type 2251 2323 0 22 35 0 0 chr6 133059489 133059518 -56220036 + AT_rich Low_complexity Low_complexity 1 29 0 441 0 0 0 chr6 133059856 133059905 -56219649 + (CA)n Simple_repeat Simple_repeat 1 49 0 180 111 0 0 chr6 133060497 133060524 -56219030 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 252 94 0 0 chr6 133060772 133060804 -56218750 - L2 LINE L2 -16 3256 3225 418 258 36 5 chr6 133060804 133060933 -56218621 - MIR SINE MIR -6 252 35 1691 178 11 0 chr6 133061533 133061802 -56217752 + AluJo SINE Alu 2 273 -39 347 244 12 12 chr6 133061845 133061927 -56217627 - L2 LINE L2 0 3313 3232 450 296 194 20 chr6 133062025 133062565 -56216989 + L2 LINE L2 1536 2169 -1145 651 316 127 40 chr6 133062572 133063243 -56216311 + L2 LINE L2 1731 2459 -855 1901 302 127 19 chr6 133063261 133064153 -56215401 + L2 LINE L2 1989 2976 -338 253 252 113 52 chr6 133064221 133064336 -56215218 + L2 LINE L2 3192 3313 0 652 163 30 0 chr6 133064649 133064784 -56214770 + L1MB1 LINE L1 6034 6172 -17 1378 145 5 5 chr6 133064898 133065105 -56214449 - AluJb SINE Alu -105 207 1 2086 116 33 3 chr6 133065117 133065419 -56214135 - AluSx SINE Alu -1 311 1 419 325 170 24 chr6 133065433 133065722 -56213832 + L2 LINE L2 2934 3264 -8 * 766 227 123 36 chr6 133065720 133065997 -56213557 - L2 LINE L2 -4 3309 3009 1988 155 14 22 chr6 133066931 133067299 -56212255 - MLT1A1 LTR MaLR 0 365 1 2370 163 56 48 chr6 133067329 133067826 -56211728 - MLT1D LTR MaLR 0 505 5 391 291 140 9 chr6 133067958 133068334 -56211220 - MARNA DNA Mariner -57 529 75 30 59 0 0 chr6 133068555 133068606 -56210948 + AT_rich Low_complexity Low_complexity 1 51 0 191 325 65 39 chr6 133068806 133068883 -56210671 - MIR SINE MIR -108 100 22 207 146 49 49 chr6 133069077 133069118 -56210436 - MIR SINE MIR -12 250 210 196 227 23 0 chr6 133069385 133069429 -56210125 - MIR SINE MIR -109 153 109 1365 180 37 37 chr6 133071590 133071884 -56207670 + MER66B LTR ERV1 193 486 0 671 100 0 0 chr6 133124035 133124125 -56155429 - AluSg/x SINE Alu -9 303 214 4387 117 132 28 chr6 133124572 133126037 -56153517 - MER41D-int LTR ERV1 -4268 1678 14 261 215 26 18 chr6 133126137 133126259 -56153295 - MER41D LTR ERV1 -2 552 428 2445 75 0 0 chr6 133126818 133127111 -56152443 + AluY SINE Alu 1 293 -18 342 143 0 0 chr6 133127145 133127208 -56152346 - L1MD1 LINE L1 -1 6241 6179 2609 169 118 32 chr6 133127215 133127836 -56151718 - L1MD1 LINE L1 -138 6104 5431 1388 175 0 32 chr6 133127855 133128058 -56151496 - L1MC1 LINE L1 -5 6328 6133 1766 186 36 27 chr6 133128058 133128391 -56151163 - MER1B DNA MER1_type -1 336 1 1388 175 0 32 chr6 133128391 133128433 -56151121 - L1MC1 LINE L1 -200 6133 6091 1621 92 13 0 chr6 133128433 133128660 -56150894 - L1MC1 LINE L1 -448 5885 5656 1456 232 56 76 chr6 133128660 133129379 -56150175 - MER49 LTR ERV1 0 923 10 2152 127 33 77 chr6 133129380 133129842 -56149712 - L1MC/D LINE L1 -667 5666 5225 1290 161 18 9 chr6 133129843 133130138 -56149416 + MER2 DNA MER2_type 2 345 0 933 214 39 12 chr6 133130138 133130395 -56149159 - L1MC/D LINE L1 -920 5226 4963 297 136 0 0 chr6 133130385 133130429 -56149125 - L1MCa LINE L1 -5175 1251 1208 * 327 25 0 0 chr6 133130436 133130476 -56149078 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 457 181 0 0 chr6 133130476 133130548 -56149006 - AluSg/x SINE Alu -32 278 207 5696 165 48 54 chr6 133130573 133131772 -56147782 - L1MCa LINE L1 -5217 1209 18 648 170 13 66 chr6 133131769 133131885 -56147669 - L1M LINE L1 -743 5403 5310 * 2145 128 3 0 chr6 133131885 133132189 -56147365 - AluSx SINE Alu -5 307 3 648 170 13 66 chr6 133132189 133132301 -56147253 - L1M LINE L1 -836 5310 5194 4176 158 40 6 chr6 133132306 133133004 -56146550 - LTR30 LTR ERV1 0 722 1 8532 197 24 23 chr6 133133004 133134752 -56144802 - HERV30 LTR ERV1 0 8257 6509 250 163 0 0 chr6 133134780 133134823 -56144731 - LTR19-int LTR ERV1 -533 5053 5011 22362 109 15 8 chr6 133134830 133137908 -56141646 - LTR19-int LTR ERV1 -1755 6502 3405 1624 265 97 87 chr6 133138135 133138245 -56141309 - L2 LINE L2 -38 3275 3168 1483 196 17 10 chr6 133138245 133138546 -56141008 - AluJb SINE Alu -3 309 7 1624 265 97 87 chr6 133138546 133139800 -56139754 - L2 LINE L2 -145 3168 1914 1687 104 126 33 chr6 133141042 133141312 -56138242 - AluSx SINE Alu -17 295 1 354 211 120 23 chr6 133141796 133141929 -56137625 + MER104 DNA Tc2 4 149 -31 299 214 83 0 chr6 133142005 133142089 -56137465 - Charlie7 DNA MER1_type -843 1769 1679 * 1255 259 94 47 chr6 133142083 133142615 -56136939 - Charlie7 DNA MER1_type -2051 561 5 767 200 104 72 chr6 133143055 133143115 -56136439 - MIR SINE MIR -3 259 202 1963 139 3 16 chr6 133143115 133143425 -56136129 + AluSx SINE Alu 1 306 -6 767 200 104 72 chr6 133143425 133143614 -56135940 - MIR SINE MIR -60 202 2 183 304 29 14 chr6 133144428 133144497 -56135057 - L2 LINE L2 -331 2941 2872 260 202 124 45 chr6 133144789 133144878 -56134676 + MER112 DNA MER1_type 159 254 -6 27 29 0 0 chr6 133145184 133145218 -56134336 + AT_rich Low_complexity Low_complexity 1 34 0 762 156 41 0 chr6 133145714 133145836 -56133718 - FLAM_A SINE Alu -5 137 11 276 232 172 80 chr6 133145839 133146089 -56133465 - L1ME LINE L1 -529 5592 5320 1507 164 35 55 chr6 133146216 133146527 -56133027 - AluJb SINE Alu -7 305 1 1181 238 142 54 chr6 133146994 133147460 -56132094 - MLT2B1 LTR ERVL -13 507 1 276 30 0 0 chr6 133148007 133148040 -56131514 + (CA)n Simple_repeat Simple_repeat 2 34 0 26 74 0 0 chr6 133150060 133150114 -56129440 + GC_rich Low_complexity Low_complexity 1 54 0 26 64 0 0 chr6 133152612 133152659 -56126895 + AT_rich Low_complexity Low_complexity 1 47 0 2490 40 7 3 chr6 133153025 133153324 -56126230 - AluY SINE Alu -11 300 1 2089 133 0 0 chr6 133153512 133153812 -56125742 - AluSx SINE Alu -12 300 1 2169 101 0 14 chr6 133154122 133154419 -56125135 + AluSx SINE Alu 1 293 -19 2054 111 31 3 chr6 133155108 133155397 -56124157 - AluSx SINE Alu -15 297 1 2227 111 3 0 chr6 133155549 133155846 -56123708 - AluSg SINE Alu -12 298 1 337 291 134 46 chr6 133156094 133156355 -56123199 - L1MC/D LINE L1 -2152 6050 5767 21 57 0 0 chr6 133156929 133156964 -56122590 + AT_rich Low_complexity Low_complexity 1 35 0 409 221 124 28 chr6 133157467 133157612 -56121942 - MER5C DNA MER1_type -165 159 1 2194 83 10 13 chr6 133157756 133158057 -56121497 + AluY SINE Alu 1 300 -11 33 66 0 0 chr6 133158095 133158156 -56121398 + AT_rich Low_complexity Low_complexity 1 61 0 2447 71 0 3 chr6 133158971 133159265 -56120289 + AluSg SINE Alu 1 293 -17 630 125 0 21 chr6 133159265 133159361 -56120193 + FLAM_A SINE Alu 44 137 -5 4140 145 55 19 chr6 133159409 133160106 -56119448 + LTR30 LTR ERV1 1 722 0 25191 105 5 4 chr6 133160106 133163467 -56116087 + HERV30 LTR ERV1 1 3364 -4893 47928 105 9 5 chr6 133163568 133170002 -56109552 - HERV30 LTR ERV1 -1801 6456 1 4231 141 55 19 chr6 133170002 133170699 -56108855 - LTR30 LTR ERV1 0 722 1 630 125 0 21 chr6 133170747 133170843 -56108711 - FLAM_A SINE Alu -5 137 44 2320 89 0 0 chr6 133170843 133171134 -56108420 - AluSg SINE Alu -17 293 3 364 156 0 0 chr6 133171136 133171200 -56108354 - Alu SINE Alu -1 301 238 1430 188 10 26 chr6 133171249 133171557 -56107997 - AluJo SINE Alu -9 303 1 367 260 91 14 chr6 133171568 133171744 -56107810 - L1MC/D LINE L1 -981 5559 5363 2763 213 49 19 chr6 133171744 133172331 -56107223 - MER77 LTR ERV1 0 605 1 367 260 91 14 chr6 133172331 133172362 -56107192 - L1MC/D LINE L1 -1177 5363 5336 5298 212 64 52 chr6 133172571 133172891 -56106663 - L1MDa LINE L1 -1523 5017 4703 474 65 0 0 chr6 133172891 133172953 -56106601 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 2180 93 11 0 chr6 133172961 133173239 -56106315 - AluSp SINE Alu -32 281 1 5298 212 64 52 chr6 133173239 133174027 -56105527 - L1MDa LINE L1 -1843 4697 3920 2198 120 0 0 chr6 133174027 133174326 -56105228 - AluSq SINE Alu -14 299 1 5298 212 64 52 chr6 133174326 133174571 -56104983 - L1MDa LINE L1 -2620 3920 3680 2251 78 27 0 chr6 133174571 133174864 -56104690 - AluSq SINE Alu -12 301 1 5298 212 64 52 chr6 133174864 133175126 -56104428 - L1MDa LINE L1 -2860 3680 3423 2174 87 13 27 chr6 133175126 133175425 -56104129 - AluY SINE Alu -16 295 1 5298 212 64 52 chr6 133175425 133177114 -56102440 - L1MDa LINE L1 -3117 3423 1661 881 311 190 18 chr6 133177132 133177531 -56102023 - L1MDa LINE L1 -5583 957 408 22 0 0 0 chr6 133178724 133178746 -56100808 + AT_rich Low_complexity Low_complexity 1 22 0 2423 68 0 0 chr6 133179291 133179586 -56099968 - AluY SINE Alu -15 296 2 978 90 0 0 chr6 133179742 133179886 -56099668 + MER41B LTR ERV1 492 635 0 13694 121 106 54 chr6 133179888 133181769 -56097785 + MER41A-int LTR ERV1 3 1786 -4160 2286 90 0 7 chr6 133181769 133182070 -56097484 - AluY SINE Alu -12 299 1 13694 121 106 54 chr6 133182070 133183676 -56095878 + MER41A-int LTR ERV1 1786 3757 -2189 11415 95 43 14 chr6 133183658 133184681 -56094873 + MER41A-int LTR ERV1 4092 5189 -757 * 2139 129 0 3 chr6 133184681 133184976 -56094578 + AluSg SINE Alu 1 294 -16 11415 95 43 14 chr6 133184976 133185754 -56093800 + MER41A-int LTR ERV1 5189 5944 -2 3444 79 0 0 chr6 133185754 133186221 -56093333 + MER41A LTR ERV1 1 467 -87 629 214 110 7 chr6 133186538 133186692 -56092862 - MIR SINE MIR -1 261 92 244 261 99 36 chr6 133186744 133186855 -56092699 + L1MC/D LINE L1 5672 5789 -332 301 246 148 54 chr6 133186921 133187124 -56092430 + HAL1 LINE L1 13 234 -2273 1678 127 4 8 chr6 133187179 133187423 -56092131 + AluSq SINE Alu 1 243 -70 630 0 0 0 chr6 133187430 133187500 -56092054 + (CA)n Simple_repeat Simple_repeat 2 71 0 443 253 118 31 chr6 133187532 133187761 -56091793 - L1MC3 LINE L1 -550 7235 6987 2981 209 114 87 chr6 133187771 133188192 -56091362 - L1MC3 LINE L1 -185 7600 7192 319 207 0 69 chr6 133188192 133188279 -56091275 - MLT1F1 LTR MaLR -443 124 44 2981 209 114 87 chr6 133188279 133188338 -56091216 - L1MC3 LINE L1 -593 7192 7136 195 100 0 0 chr6 133188338 133188368 -56091186 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 2981 209 114 87 chr6 133188368 133188999 -56090555 - L1MC3 LINE L1 -649 7136 6369 1810 210 30 30 chr6 133189000 133189467 -56090087 - MLT1C LTR MaLR 0 467 1 2309 116 41 8 chr6 133190561 133190924 -56088630 - THE1C LTR MaLR 0 375 1 194 200 0 60 chr6 133192227 133192277 -56087277 - L2 LINE L2 0 3313 3267 2311 51 48 0 chr6 133192920 133193213 -56086341 - AluY SINE Alu -3 308 2 428 336 90 66 chr6 133193592 133193958 -56085596 - L2 LINE L2 0 3272 2898 225 264 142 38 chr6 133193927 133194033 -56085521 - L2 LINE L2 -612 2702 2586 * 1161 147 89 0 chr6 133194148 133194372 -56085182 + MSTA LTR MaLR 22 265 -163 201 74 0 0 chr6 133194412 133194439 -56085115 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 696 242 0 11 chr6 133194481 133194659 -56084895 - L1MB8 LINE L1 -37 6141 5966 345 227 39 71 chr6 133194837 133194991 -56084563 - L1MC5 LINE L1 -50 7911 7763 245 207 69 83 chr6 133195017 133195162 -56084392 - MIR SINE MIR 0 262 120 21 57 0 0 chr6 133195372 133195407 -56084147 + AT_rich Low_complexity Low_complexity 1 35 0 265 296 35 76 chr6 133195412 133195584 -56083970 - MIR SINE MIR -91 171 7 230 316 194 10 chr6 133195656 133195754 -56083800 + MIR SINE MIR 25 140 -68 4704 81 8 23 chr6 133195963 133196607 -56082947 - MER51A LTR ERV1 0 634 1 733 93 34 17 chr6 133196852 133196970 -56082584 - LTR9B LTR ERV1 0 644 525 2490 157 52 0 chr6 133197094 133197559 -56081995 - LTR9B LTR ERV1 -128 516 28 267 31 0 0 chr6 133197724 133197756 -56081798 + (TG)n Simple_repeat Simple_repeat 2 33 0 38427 129 24 9 chr6 133198850 133207471 -56072083 - HUERS-P3 LTR ERV1 -12 8907 1 3905 118 48 8 chr6 133207471 133208090 -56071464 - LTR9B LTR ERV1 0 644 1 1828 179 0 10 chr6 133208605 133208907 -56070647 + AluJb SINE Alu 1 299 -13 1372 142 19 81 chr6 133208911 133209051 -56070503 - LTR10B LTR ERV1 0 547 435 2265 93 3 0 chr6 133209051 133209351 -56070203 - AluSc SINE Alu -8 301 1 1372 142 19 81 chr6 133209351 133209519 -56070035 - LTR10B LTR ERV1 -112 435 258 4424 223 13 13 chr6 133209722 133211008 -56068546 - LTR9B-int LTR ERV1 -1 6648 5313 735 286 163 26 chr6 133211189 133211532 -56068022 - LTR9B-int LTR ERV1 -1790 4859 4470 881 214 0 25 chr6 133211569 133211770 -56067784 - LTR10B-int LTR ERV1 -2353 5432 5237 * 1557 255 8 5 chr6 133211765 133212239 -56067315 - LTR10B-int LTR ERV1 -2584 4065 3691 2276 225 95 52 chr6 133212285 133213289 -56066265 - LTR10B-int LTR ERV1 -5812 837 11 1174 200 72 107 chr6 133213298 133213757 -56065797 - LTR10B LTR ERV1 -14 533 91 603 163 12 75 chr6 133213869 133214029 -56065525 - L1M4 LINE L1 -1072 5074 4925 287 258 82 18 chr6 133214384 133214577 -56064977 - L1M4c LINE L1 -952 1791 1528 2198 99 3 3 chr6 133214729 133215021 -56064533 - AluSq SINE Alu -21 292 1 1681 113 0 66 chr6 133215201 133215504 -56064050 - AluSc SINE Alu 0 308 24 198 0 0 0 chr6 133215506 133215528 -56064026 + (T)n Simple_repeat Simple_repeat 1 22 0 2226 102 10 0 chr6 133215645 133215948 -56063606 + AluSp SINE Alu 1 306 -7 34 24 0 0 chr6 133215974 133216015 -56063539 + AT_rich Low_complexity Low_complexity 1 41 0 40 67 0 0 chr6 133216754 133216829 -56062725 + AT_rich Low_complexity Low_complexity 1 75 0 189 171 0 0 chr6 133216864 133216899 -56062655 + (TG)n Simple_repeat Simple_repeat 2 36 0 251 307 80 11 chr6 133217071 133217159 -56062395 + MER5A DNA MER1_type 34 127 -62 269 289 0 0 chr6 133217699 133217775 -56061779 + (TA)n Simple_repeat Simple_repeat 2 77 0 329 303 33 20 chr6 133217912 133218064 -56061490 - L1 LINE L1 -748 5398 5245 383 299 254 0 chr6 133218109 133218286 -56061268 - MIR SINE MIR -1 261 40 204 83 56 0 chr6 133218290 133218326 -56061228 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 637 27 0 0 chr6 133218335 133218410 -56061144 - L1PA5 LINE L1 -8 6146 6072 2151 136 0 3 chr6 133218432 133218742 -56060812 - AluSx SINE Alu -3 309 1 26 0 0 0 chr6 133218831 133218857 -56060697 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr6 133218904 133218940 -56060614 + AT_rich Low_complexity Low_complexity 1 36 0 313 336 42 71 chr6 133219043 133219281 -56060273 + L2 LINE L2 2603 2833 -481 399 295 77 53 chr6 133219390 133219766 -56059788 - LTR67 LTR ERVL -8 549 165 244 64 0 0 chr6 133220511 133220558 -56058996 - LTR66 LTR ERVL -170 440 394 321 185 0 0 chr6 133220558 133220623 -56058931 + (CA)n Simple_repeat Simple_repeat 2 66 0 2141 106 3 3 chr6 133221082 133221375 -56058179 + AluSq SINE Alu 1 293 -20 399 303 52 39 chr6 133222593 133222748 -56056806 + MIR3 SINE MIR 16 172 -36 847 138 0 0 chr6 133224050 133224180 -56055374 + FLAM_C SINE Alu 1 130 -3 1425 182 20 34 chr6 133225142 133225438 -56054116 + AluJo SINE Alu 3 294 -18 24 0 0 0 chr6 133226258 133226282 -56053272 + AT_rich Low_complexity Low_complexity 1 24 0 2103 122 82 68 chr6 133227199 133227627 -56051927 + Tigger2a DNA MER2_type 1 434 0 210 307 0 53 chr6 133227769 133227844 -56051710 + L3 LINE CR1 1505 1575 -2 312 27 0 0 chr6 133229103 133229140 -56050414 + (TC)n Simple_repeat Simple_repeat 2 38 0 336 133 0 0 chr6 133229140 133229200 -56050354 + (TG)n Simple_repeat Simple_repeat 2 61 0 3861 165 65 16 chr6 133229308 133229550 -56050004 - MER6 DNA MER2_type -1 864 635 1954 123 49 0 chr6 133229550 133229835 -56049719 + AluSx SINE Alu 1 299 -13 3861 165 65 16 chr6 133229835 133230411 -56049143 - MER6 DNA MER2_type -230 635 -27 3861 99 11 2 chr6 133231595 133232148 -56047406 + L1PA14 LINE L1 5600 6157 -4 2324 55 20 3 chr6 133232358 133232651 -56046903 - AluY SINE Alu -13 298 1 477 331 40 89 chr6 133232890 133233262 -56046292 + L2 LINE L2 2869 3222 -50 757 155 0 0 chr6 133233354 133233470 -56046084 + FLAM_C SINE Alu 1 116 -27 1534 156 94 0 chr6 133233516 133233772 -56045782 - AluJb SINE Alu -32 280 1 22 56 0 0 chr6 133233775 133233811 -56045743 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 133234568 133234590 -56044964 + AT_rich Low_complexity Low_complexity 1 22 0 235 281 250 0 chr6 133237154 133237282 -56042272 + MIR SINE MIR 44 203 -59 29 28 0 0 chr6 133237400 133237436 -56042118 + AT_rich Low_complexity Low_complexity 1 36 0 30 77 0 0 chr6 133238300 133238365 -56041189 + AT_rich Low_complexity Low_complexity 1 65 0 261 261 76 76 chr6 133240967 133241151 -56038403 - MIR SINE MIR -39 223 40 362 145 14 0 chr6 133242039 133242108 -56037446 + Charlie4 DNA MER1_type 42 111 -1850 2070 98 4 0 chr6 133242218 133242493 -56037061 - AluSg SINE Alu -34 276 1 1359 184 199 5 chr6 133244611 133245003 -56034551 - LTR54B LTR ERV1 -4 494 27 305 158 184 0 chr6 133245007 133245083 -56034471 - LTR54B LTR ERV1 -407 91 2 227 359 76 23 chr6 133245171 133245302 -56034252 + MIR3 SINE MIR 65 202 -6 2138 89 0 7 chr6 133247003 133247326 -56032228 - AluSc SINE Alu 0 321 1 1217 78 0 0 chr6 133248044 133248210 -56031344 + L1PA10 LINE L1 6003 6168 0 1516 139 146 26 chr6 133248304 133248606 -56030948 - MER7A DNA MER2_type -9 337 2 21 0 0 0 chr6 133248674 133248695 -56030859 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 133249382 133249404 -56030150 + AT_rich Low_complexity Low_complexity 1 22 0 583 241 155 46 chr6 133251322 133251775 -56027779 - L1ME3 LINE L1 -1 6161 5657 2301 170 17 12 chr6 133251926 133252338 -56027216 - MER44D DNA MER2_type -118 487 19 1036 234 108 16 chr6 133252376 133252747 -56026807 - L1ME1 LINE L1 -118 6048 5644 25 0 0 0 chr6 133252747 133252772 -56026782 + AT_rich Low_complexity Low_complexity 1 25 0 1660 138 4 36 chr6 133252788 133253063 -56026491 - AluSx SINE Alu -46 266 1 340 207 72 9 chr6 133253094 133253205 -56026349 - L1ME1 LINE L1 -1255 4891 4774 1730 98 0 0 chr6 133253206 133253430 -56026124 - AluSx SINE Alu -88 224 1 580 239 73 28 chr6 133253432 133253650 -56025904 - L1ME1 LINE L1 -1664 4482 4255 1977 255 87 25 chr6 133253656 133253682 -56025872 - L1ME1 LINE L1 -2273 3873 3850 2105 111 0 23 chr6 133253682 133253988 -56025566 - AluSx SINE Alu -13 299 1 1977 255 87 25 chr6 133253988 133254850 -56024704 - L1ME1 LINE L1 -2296 3850 2930 226 310 35 0 chr6 133255134 133255221 -56024333 - L1M4 LINE L1 -2687 3459 3370 6261 198 18 15 chr6 133255270 133257469 -56022085 - L1PA15 LINE L1 -2 6163 3960 352 234 75 0 chr6 133257469 133257563 -56021991 - MER58 DNA MER1_type -208 133 33 24 67 0 0 chr6 133257729 133257774 -56021780 + AT_rich Low_complexity Low_complexity 1 45 0 2447 80 0 3 chr6 133258164 133258475 -56021079 - AluY SINE Alu -1 310 1 198 103 0 0 chr6 133259572 133259601 -56019953 + (A)n Simple_repeat Simple_repeat 1 29 0 21 36 0 0 chr6 133259983 133260011 -56019543 + AT_rich Low_complexity Low_complexity 1 28 0 2460 169 28 33 chr6 133260382 133260496 -56019058 - MER41B LTR ERV1 -12 597 484 2036 93 40 10 chr6 133260496 133260798 -56018756 + AluSp SINE Alu 1 311 -2 2460 169 28 33 chr6 133260798 133261194 -56018360 - MER41B LTR ERV1 -125 484 105 214 338 0 0 chr6 133261239 133261310 -56018244 + MIR SINE MIR 6 76 -186 1862 185 68 50 chr6 133262010 133262469 -56017085 - MLT1C LTR MaLR 0 467 1 1897 163 39 28 chr6 133262681 133263068 -56016486 - MER61C LTR ERV1 -30 404 14 238 265 0 0 chr6 133263036 133263085 -56016469 - LTR28 LTR ERV1 -959 61 13 * 2124 53 61 0 chr6 133263335 133263622 -56015932 - AluY SINE Alu 0 303 1 26 50 0 0 chr6 133263809 133263849 -56015705 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr6 133264006 133264028 -56015526 + AT_rich Low_complexity Low_complexity 1 22 0 1828 160 14 3 chr6 133264911 133265205 -56014349 - AluSx SINE Alu -15 297 1 2133 81 4 0 chr6 133265450 133265722 -56013832 - AluSp SINE Alu -40 273 1 25 51 0 0 chr6 133265873 133265912 -56013642 + AT_rich Low_complexity Low_complexity 1 39 0 814 255 168 12 chr6 133265952 133266214 -56013340 - MLT1H LTR MaLR -108 441 90 1746 148 56 3 chr6 133267049 133267388 -56012166 + L1MA5 LINE L1 5939 6295 -5 1112 243 84 25 chr6 133267394 133268145 -56011409 - L1MEc LINE L1 -1784 4431 3524 479 163 27 0 chr6 133268218 133268365 -56011189 + (CA)n Simple_repeat Simple_repeat 1 151 0 1889 99 57 0 chr6 133268365 133268627 -56010927 - AluSg SINE Alu -33 277 1 3415 244 66 45 chr6 133268627 133268704 -56010850 - L1MEc LINE L1 -3055 3160 3086 18113 92 15 6 chr6 133268704 133272047 -56007507 + L1PA7 LINE L1 2786 6154 0 3415 244 66 45 chr6 133272047 133272692 -56006862 - L1MEc LINE L1 -3129 3086 2456 1498 212 7 20 chr6 133272692 133272998 -56006556 + AluJo SINE Alu 1 302 -10 3415 244 66 45 chr6 133272998 133273248 -56006306 - L1MEc LINE L1 -3759 2456 2213 2246 123 0 0 chr6 133273248 133273557 -56005997 - AluSx SINE Alu -2 310 2 3415 244 66 45 chr6 133273557 133275123 -56004431 - L1MEc LINE L1 -4002 2213 509 983 224 23 9 chr6 133275123 133275337 -56004217 - MER20 DNA MER1_type -2 217 1 3415 244 66 45 chr6 133275337 133275820 -56003734 - L1MEc LINE L1 -5706 509 38 201 245 57 0 chr6 133276125 133276178 -56003376 + MIR SINE MIR 175 230 -32 1155 277 84 69 chr6 133276689 133277458 -56002096 - L1MC4a LINE L1 -1774 6314 5534 227 313 100 25 chr6 133277642 133277722 -56001832 - L2 LINE L2 -47 3225 3140 251 269 0 0 chr6 133279501 133279568 -55999986 + T-rich Low_complexity Low_complexity 1 67 0 408 336 29 79 chr6 133279847 133280228 -55999326 - L2 LINE L2 -98 3174 2813 386 244 11 0 chr6 133280253 133280343 -55999211 - MER94 DNA DNA -19 115 25 217 337 163 34 chr6 133280343 133280931 -55998623 - L2 LINE L2 -620 2694 2031 2798 178 18 25 chr6 133281738 133282293 -55997261 - L1MC1 LINE L1 -11 6322 5772 261 0 0 0 chr6 133282362 133282391 -55997163 + (T)n Simple_repeat Simple_repeat 1 29 0 1945 100 0 4 chr6 133282391 133282641 -55996913 - AluSg SINE Alu -61 249 1 587 193 0 9 chr6 133282668 133282777 -55996777 - L1MC1 LINE L1 -7 6326 6219 368 130 0 0 chr6 133282777 133282831 -55996723 - L1MC1 LINE L1 -2242 5753 5700 2404 203 69 37 chr6 133282839 133283407 -55996147 - MER21B LTR ERV1 -1 862 277 2108 133 0 3 chr6 133283407 133283709 -55995845 - AluSx SINE Alu -11 301 1 3480 218 33 18 chr6 133283761 133284742 -55994812 - L1MC4a LINE L1 -900 5526 4532 207 0 0 0 chr6 133285968 133285991 -55993563 + (TC)n Simple_repeat Simple_repeat 1 23 0 302 257 90 104 chr6 133286358 133286580 -55992974 - L1M2 LINE L1 -5459 1390 1172 352 191 0 0 chr6 133286973 133287036 -55992518 - AluJo SINE Alu -9 293 231 2194 177 9 47 chr6 133287096 133287543 -55992011 - LTR3 LTR ERVK -2 430 1 1372 143 34 59 chr6 133287544 133287782 -55991772 - AluJo SINE Alu -80 232 1 1462 216 20 53 chr6 133287786 133288107 -55991447 - L1MC4a LINE L1 -1885 4541 4238 2303 107 0 0 chr6 133288107 133288417 -55991137 - AluSg SINE Alu 0 310 1 1462 216 20 53 chr6 133288417 133288544 -55991010 - L1MC4a LINE L1 -2188 4238 4108 1708 229 39 30 chr6 133288550 133289092 -55990462 - L1MC4a LINE L1 -3024 3402 2856 253 179 0 30 chr6 133289120 133289187 -55990367 + CT-rich Low_complexity Low_complexity 4 68 0 621 152 0 0 chr6 133289188 133289293 -55990261 - FLAM_C SINE Alu -8 135 31 393 217 0 0 chr6 133289315 133289398 -55990156 - L1MC4a LINE L1 -3595 2831 2749 842 125 0 8 chr6 133289457 133289577 -55989977 - FLAM_C SINE Alu -12 131 13 2384 152 78 42 chr6 133289588 133290166 -55989388 - L1MC4a LINE L1 -4111 2315 1717 11548 102 7 17 chr6 133290166 133291148 -55988406 - Charlie3 DNA MER1_type 0 2706 1716 2033 79 4 0 chr6 133291148 133291402 -55988152 + AluSg SINE Alu 1 255 -55 449 17 17 0 chr6 133291403 133291461 -55988093 + (TAAAA)n Simple_repeat Simple_repeat 5 63 0 11548 102 7 17 chr6 133291461 133292139 -55987415 - Charlie3 DNA MER1_type -989 1717 1060 2475 119 22 8 chr6 133292139 133292509 -55987045 - THE1C LTR MaLR 0 375 1 855 120 14 7 chr6 133292509 133292651 -55986903 - THE1C-int LTR MaLR 0 1580 1438 5008 181 36 78 chr6 133292651 133293898 -55985656 - L1MC4a LINE L1 -5226 1200 6 354 238 60 12 chr6 133295048 133295132 -55984422 + L2 LINE L2 3225 3312 -1 380 285 52 42 chr6 133295329 133295522 -55984032 - L2 LINE L2 0 3313 3119 403 325 112 29 chr6 133295621 133295827 -55983727 - MIR SINE MIR 0 262 40 387 0 0 0 chr6 133296561 133296604 -55982950 + (TG)n Simple_repeat Simple_repeat 2 44 0 1688 144 23 39 chr6 133296604 133296910 -55982644 + L1P5 LINE L1 5492 5792 -359 1544 202 121 16 chr6 133296911 133297341 -55982213 - L1ME2 LINE L1 -191 5973 5499 3505 141 68 99 chr6 133297445 133298285 -55981269 - L1MB1 LINE L1 0 6168 5355 444 210 0 12 chr6 133298286 133298367 -55981187 - MER8 DNA MER2_type -159 80 1 3803 246 79 56 chr6 133298387 133298511 -55981043 - L1M4c LINE L1 -4516 1375 1255 2201 112 3 13 chr6 133298511 133298815 -55980739 - AluSq SINE Alu -12 301 1 3803 246 79 56 chr6 133298815 133300427 -55979127 - L1M4c LINE L1 -4636 1255 1 301 307 181 0 chr6 133302063 133302190 -55977364 + MIR3 SINE MIR 15 164 -44 1860 248 91 40 chr6 133302795 133303461 -55976093 - HsTC2c DNA Tc2 -1169 729 25 2072 122 0 29 chr6 133303461 133303772 -55975782 - AluSx SINE Alu -9 303 2 1860 248 91 40 chr6 133303772 133303799 -55975755 - HsTC2c DNA Tc2 -1873 25 1 730 249 14 41 chr6 133304681 133304902 -55974652 - MER20 DNA MER1_type 0 219 5 2527 155 26 9 chr6 133305110 133305569 -55973985 + L1MB2 LINE L1 5667 6133 -38 26 50 0 0 chr6 133305574 133305614 -55973940 + AT_rich Low_complexity Low_complexity 1 40 0 30 59 0 0 chr6 133306062 133306113 -55973441 + AT_rich Low_complexity Low_complexity 1 51 0 1208 202 0 8 chr6 133306136 133306374 -55973180 - MER46A DNA MER2_type 0 236 1 273 26 0 0 chr6 133306756 133306795 -55972759 + L1PA14 LINE L1 6123 6161 0 25 0 0 0 chr6 133307772 133307797 -55971757 + AT_rich Low_complexity Low_complexity 1 25 0 611 255 224 50 chr6 133308123 133308480 -55971074 - L2 LINE L2 -62 3251 2833 22 0 0 0 chr6 133309933 133309955 -55969599 + AT_rich Low_complexity Low_complexity 1 22 0 248 349 46 9 chr6 133311765 133311874 -55967680 + MER5A DNA MER1_type 42 154 -35 1069 187 60 46 chr6 133312122 133312149 -55967405 - L1MB8 LINE L1 -4 6174 6149 2457 69 3 3 chr6 133312149 133312453 -55967101 + AluY SINE Alu 3 306 -5 1069 187 60 46 chr6 133312453 133312708 -55966846 - L1MB8 LINE L1 -29 6149 5888 * 2906 248 109 57 chr6 133312699 133313748 -55965806 - L1M4b LINE L1 -5754 1105 3 986 263 148 0 chr6 133313921 133314218 -55965336 + L2 LINE L2 2410 2750 -564 26 30 0 0 chr6 133314358 133314391 -55965163 + AT_rich Low_complexity Low_complexity 1 33 0 616 220 30 8 chr6 133314730 133314862 -55964692 + MIR SINE MIR 97 231 -31 416 280 114 0 chr6 133315873 133316005 -55963549 - MIR SINE MIR -108 154 8 236 383 91 26 chr6 133316077 133316495 -55963059 - L2 LINE L2 -2044 1270 826 465 339 34 20 chr6 133316508 133316643 -55962911 + LTR16B LTR ERVL 1 133 -331 1052 152 28 5 chr6 133316643 133316854 -55962700 - L1MA4 LINE L1 0 6300 6085 465 339 34 20 chr6 133316854 133317136 -55962418 + LTR16B LTR ERVL 133 464 0 1098 158 0 11 chr6 133317352 133317535 -55962019 + AluSx SINE Alu 1 181 -131 22 35 0 0 chr6 133318693 133318722 -55960832 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr6 133318812 133318854 -55960700 + AT_rich Low_complexity Low_complexity 1 42 0 2301 106 0 3 chr6 133320967 133321278 -55958276 - AluSg SINE Alu 0 310 1 33 56 0 0 chr6 133321537 133321591 -55957963 + AT_rich Low_complexity Low_complexity 1 54 0 208 301 27 0 chr6 133322481 133322554 -55957000 + MIR SINE MIR 138 212 -50 622 233 75 83 chr6 133322639 133322726 -55956828 - MIR SINE MIR -24 238 152 2294 95 0 3 chr6 133322726 133323031 -55956523 + AluSx SINE Alu 1 304 -8 622 233 75 83 chr6 133323031 133323183 -55956371 - MIR SINE MIR -110 152 1 648 274 128 69 chr6 133323600 133323990 -55955564 + L1ME4a LINE L1 5496 5908 -213 1214 172 10 0 chr6 133324156 133324365 -55955189 + MER2 DNA MER2_type 1 211 -134 1620 163 109 0 chr6 133324397 133324673 -55954881 - AluJo SINE Alu -6 306 1 260 274 0 0 chr6 133324722 133324773 -55954781 + MER2 DNA MER2_type 290 340 -5 292 0 70 0 chr6 133325814 133325857 -55953697 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 1774 165 4 0 chr6 133325857 133326136 -55953418 - AluJb SINE Alu -32 280 1 192 281 132 33 chr6 133326817 133326938 -55952616 - MIR SINE MIR -123 139 7 509 262 248 10 chr6 133326948 133327154 -55952400 - MIR SINE MIR -1 261 7 238 204 111 0 chr6 133327506 133327560 -55951994 - L2 LINE L2 -2 3311 3252 188 255 0 20 chr6 133327583 133327634 -55951920 + L3 LINE CR1 1283 1332 -245 220 293 232 0 chr6 133328152 133328234 -55951320 - MIR SINE MIR -78 130 30 520 165 0 68 chr6 133328932 133329035 -55950519 + FLAM_A SINE Alu 1 96 -46 430 255 0 0 chr6 133330340 133330434 -55949120 + MIR3 SINE MIR 76 169 -39 2007 80 0 61 chr6 133330694 133330910 -55948644 - L1PA15 LINE L1 0 6165 5972 180 0 0 0 chr6 133330910 133330930 -55948624 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2007 80 0 61 chr6 133330930 133331024 -55948530 - L1PA15 LINE L1 -193 5972 5874 1974 160 3 0 chr6 133332129 133332435 -55947119 + AluSx SINE Alu 1 307 -5 2040 145 3 3 chr6 133332501 133332811 -55946743 - AluSx SINE Alu -2 310 1 36 40 0 0 chr6 133332813 133332863 -55946691 + AT_rich Low_complexity Low_complexity 1 50 0 1931 177 3 0 chr6 133332958 133333263 -55946291 + AluJb SINE Alu 1 306 -6 506 168 0 29 chr6 133333263 133333400 -55946154 + GA-rich Low_complexity Low_complexity 1 133 0 4106 155 41 56 chr6 133334462 133334717 -55944837 + L1MB7 LINE L1 4968 5225 -959 2325 112 0 0 chr6 133334717 133335020 -55944534 + AluSg SINE Alu 1 303 -7 4106 155 41 56 chr6 133335020 133335973 -55943581 + L1MB7 LINE L1 5225 6148 -36 632 191 9 0 chr6 133336094 133336204 -55943350 + FLAM_C SINE Alu 1 111 -32 210 191 0 0 chr6 133336511 133336558 -55942996 + (TTA)n Simple_repeat Simple_repeat 1 47 0 3961 165 83 28 chr6 133336580 133337483 -55942071 - L1MA9 LINE L1 -22 6290 5338 506 182 15 94 chr6 133337556 133337690 -55941864 + MIR3 SINE MIR 47 169 -39 629 365 43 32 chr6 133337959 133338549 -55941005 + L2 LINE L2 2183 2816 -498 823 285 57 14 chr6 133338553 133338834 -55940720 - LTR16A LTR ERVL -20 430 138 226 386 10 20 chr6 133339029 133339130 -55940424 + L2 LINE L2 3121 3220 -52 1829 104 0 0 chr6 133339157 133339397 -55940157 + AluSc SINE Alu 33 272 -37 242 359 109 10 chr6 133339424 133339616 -55939938 + L2 LINE L2 2840 3050 -222 212 365 12 24 chr6 133340120 133340205 -55939349 + L2 LINE L2 3137 3220 -52 1852 108 8 0 chr6 133340232 133340483 -55939071 + AluSc SINE Alu 33 285 -24 259 354 109 10 chr6 133340503 133340695 -55938859 + L2 LINE L2 2840 3050 -222 240 325 0 0 chr6 133341269 133341346 -55938208 - Charlie8 DNA MER1_type -2338 79 3 180 143 0 0 chr6 133341542 133341557 -55937997 + (A)n Simple_repeat Simple_repeat 1 15 -20 1467 176 8 34 chr6 133341557 133341824 -55937730 + AluJb SINE Alu 1 260 -52 180 143 0 0 chr6 133341824 133341843 -55937711 + (A)n Simple_repeat Simple_repeat 14 35 0 216 0 0 0 chr6 133341860 133341884 -55937670 + (T)n Simple_repeat Simple_repeat 1 24 0 1749 147 10 7 chr6 133342148 133342440 -55937114 + AluJb SINE Alu 1 293 -19 24 32 0 0 chr6 133343119 133343150 -55936404 + AT_rich Low_complexity Low_complexity 1 31 0 1966 84 37 87 chr6 133343298 133343619 -55935935 - AluSx SINE Alu -7 305 1 333 0 0 0 chr6 133344325 133344362 -55935192 + (CA)n Simple_repeat Simple_repeat 1 37 0 1037 186 25 59 chr6 133345853 133346089 -55933465 + AluJo SINE Alu 82 309 -3 22 0 0 0 chr6 133346357 133346379 -55933175 + AT_rich Low_complexity Low_complexity 1 22 0 957 103 0 0 chr6 133346379 133346505 -55933049 - FLAM_C SINE Alu -7 126 1 1743 220 44 14 chr6 133347758 133348258 -55931296 - L1MB7 LINE L1 0 6184 5670 806 324 48 9 chr6 133348370 133348780 -55930774 + L2 LINE L2 2670 3094 -219 1245 103 0 43 chr6 133348784 133348933 -55930621 - AluSq SINE Alu -18 295 141 6176 66 10 0 chr6 133348933 133349705 -55929849 + LTR17 LTR ERV1 1 780 0 1245 103 0 43 chr6 133349705 133349722 -55929832 - AluSq SINE Alu -172 141 135 685 212 8 0 chr6 133349722 133349854 -55929700 - FLAM_C SINE Alu 0 133 1 1245 103 0 43 chr6 133349854 133349870 -55929684 - AluSq SINE Alu -178 135 120 508 211 130 0 chr6 133349890 133350013 -55929541 + L2 LINE L2 3172 3310 -3 25 31 0 0 chr6 133350112 133350144 -55929410 + AT_rich Low_complexity Low_complexity 1 32 0 379 264 94 40 chr6 133350554 133350755 -55928799 + LTR16C LTR ERVL 277 488 -3 809 142 8 15 chr6 133351472 133351606 -55927948 - FLAM_C SINE Alu 0 133 1 400 297 120 34 chr6 133352022 133352231 -55927323 + MLT1K LTR MaLR 141 367 -221 297 261 0 11 chr6 133352255 133352270 -55927284 + GA-rich Low_complexity Low_complexity 4 18 -72 1711 197 7 0 chr6 133352270 133352580 -55926974 + AluJb SINE Alu 1 312 0 297 261 0 11 chr6 133352580 133352652 -55926902 + GA-rich Low_complexity Low_complexity 18 90 0 2141 82 0 57 chr6 133352686 133352804 -55926750 + AluSq SINE Alu 1 124 -189 2376 94 3 3 chr6 133352804 133353111 -55926443 + AluSp SINE Alu 1 307 -6 2141 82 0 57 chr6 133353111 133353307 -55926247 + AluSq SINE Alu 124 297 -16 184 410 0 0 chr6 133354400 133354483 -55925071 + L2 LINE L2 3201 3283 -30 676 284 48 31 chr6 133355101 133355393 -55924161 - LTR67 LTR ERVL -22 535 239 404 214 145 8 chr6 133355955 133356072 -55923482 + HsTC2 DNA Tc2 2 134 -1764 445 178 31 61 chr6 133356103 133356266 -55923288 + HsTC2 DNA Tc2 1691 1848 -50 1873 309 79 47 chr6 133356328 133356978 -55922576 - ERVL LTR ERVL -384 5380 4752 845 228 11 11 chr6 133356978 133357167 -55922387 - MER5A DNA MER1_type 0 189 1 1873 309 79 47 chr6 133357167 133357353 -55922201 - ERVL LTR ERVL -1012 4752 4573 433 266 73 0 chr6 133357353 133357477 -55922077 + MER94 DNA DNA 1 133 -1 1873 309 79 47 chr6 133357477 133357542 -55922012 - ERVL LTR ERVL -1191 4573 4512 2377 95 20 0 chr6 133357542 133357848 -55921706 + AluSx SINE Alu 1 312 0 1873 309 79 47 chr6 133357848 133358225 -55921329 - ERVL LTR ERVL -1252 4512 4059 207 0 0 0 chr6 133358235 133358258 -55921296 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1173 279 82 30 chr6 133358260 133358833 -55920721 - MLT1L LTR MaLR -5 610 8 1528 324 115 36 chr6 133359157 133360596 -55918958 - ERVL LTR ERVL -2096 3668 2117 2003 151 0 7 chr6 133360723 133361021 -55918533 + AluJb SINE Alu 1 296 -16 2170 104 0 10 chr6 133361222 133361547 -55918007 - AluSx SINE Alu 0 322 1 260 257 29 0 chr6 133361551 133361621 -55917933 - ERVL LTR ERVL -4107 1547 1476 4129 122 24 0 chr6 133362718 133363342 -55916212 + L1PA16 LINE L1 5525 6163 -3 235 274 222 7 chr6 133363356 133363491 -55916063 - MLT1L LTR MaLR -415 200 37 1921 167 0 3 chr6 133363781 133364075 -55915479 + AluJo SINE Alu 1 293 -19 569 203 6 85 chr6 133364208 133364267 -55915287 + MLT1H LTR MaLR 3 65 -484 2372 83 0 0 chr6 133364267 133364568 -55914986 + AluY SINE Alu 1 301 -10 569 203 6 85 chr6 133364568 133364690 -55914864 + MLT1H LTR MaLR 65 214 -335 244 233 0 0 chr6 133364737 133364797 -55914757 + T-rich Low_complexity Low_complexity 1 60 0 358 137 82 0 chr6 133364797 133364870 -55914684 + MLT1H LTR MaLR 471 549 0 459 177 13 0 chr6 133364974 133365053 -55914501 - AluJ/FLAM SINE Alu -228 84 5 27 0 0 0 chr6 133365374 133365401 -55914153 + AT_rich Low_complexity Low_complexity 1 27 0 268 221 19 29 chr6 133365448 133365552 -55914002 + Charlie7 DNA MER1_type 2495 2597 -15 2200 105 0 7 chr6 133366017 133366323 -55913231 - AluSx SINE Alu -8 304 1 1894 155 13 10 chr6 133368743 133369046 -55910508 - AluJb SINE Alu -8 304 1 328 247 111 74 chr6 133369049 133369239 -55910315 - L1MC/D LINE L1 -1983 5825 5629 284 319 29 0 chr6 133369366 133369504 -55910050 + L1ME LINE L1 5372 5513 -657 229 276 231 35 chr6 133369680 133369879 -55909675 - L2 LINE L2 0 3272 3035 195 129 0 0 chr6 133370308 133370339 -55909215 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 225 0 0 0 chr6 133371085 133371110 -55908444 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 243 0 0 0 chr6 133371109 133371136 -55908418 + (GA)n Simple_repeat Simple_repeat 1 27 0 536 203 41 8 chr6 133372278 133372401 -55907153 - L2 LINE L2 -1 3312 3186 2056 108 3 33 chr6 133372742 133373047 -55906507 + AluSp SINE Alu 1 296 -17 282 303 148 19 chr6 133373436 133373598 -55905956 + MIR SINE MIR 20 202 -60 2552 53 0 3 chr6 133373923 133374226 -55905328 - AluY SINE Alu -9 302 1 359 230 133 9 chr6 133375654 133375767 -55903787 + MARNA DNA Mariner 200 326 -260 671 290 99 5 chr6 133376126 133376347 -55903207 + MIR SINE MIR 19 260 -2 2184 117 23 71 chr6 133376572 133376964 -55902590 - THE1C LTR MaLR 0 375 3 383 307 39 0 chr6 133377100 133377227 -55902327 - L3b LINE CR1 -121 1462 1331 736 20 10 20 chr6 133377619 133377718 -55901836 + (TTTTA)n Simple_repeat Simple_repeat 2 99 0 2196 101 0 0 chr6 133377722 133378000 -55901554 - AluSx SINE Alu -34 278 1 2143 82 0 4 chr6 133378211 133378480 -55901074 + AluY SINE Alu 1 268 -43 2101 107 0 0 chr6 133378530 133378802 -55900752 + AluSc SINE Alu 1 272 -37 270 0 0 0 chr6 133378806 133378836 -55900718 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2550 37 7 10 chr6 133379134 133379432 -55900122 + AluY SINE Alu 1 297 -14 667 122 0 0 chr6 133379657 133379747 -55899807 + FLAM_C SINE Alu 27 116 -27 273 57 0 0 chr6 133380501 133380536 -55899018 + 5S rRNA rRNA 56 90 -31 355 233 0 26 chr6 133381821 133381937 -55897617 + CT-rich Low_complexity Low_complexity 4 116 0 254 224 0 118 chr6 133381938 133382014 -55897540 + MER112 DNA MER1_type 194 260 0 2137 171 40 73 chr6 133382325 133382774 -55896780 + MLT1D LTR MaLR 1 463 -42 318 26 0 0 chr6 133382774 133382813 -55896741 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1989 115 4 14 chr6 133382814 133383092 -55896462 - AluSx SINE Alu -32 280 6 2137 171 40 73 chr6 133383092 133383162 -55896392 + MLT1D LTR MaLR 462 505 0 2471 78 0 3 chr6 133383502 133383808 -55895746 - AluY SINE Alu -6 305 1 227 267 27 13 chr6 133384046 133384121 -55895433 + MIR SINE MIR 68 143 -65 3537 135 54 99 chr6 133385505 133386296 -55893258 - L1MB3 LINE L1 0 6183 5428 189 0 0 0 chr6 133387015 133387036 -55892518 + (TA)n Simple_repeat Simple_repeat 1 21 0 1245 169 48 36 chr6 133387036 133387274 -55892280 - AluJo SINE Alu -18 294 51 432 271 8 8 chr6 133387435 133387564 -55891990 + L2 LINE L2 3184 3312 -1 201 74 0 0 chr6 133387566 133387593 -55891961 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 980 293 34 25 chr6 133387703 133388061 -55891493 + MLT1I LTR MaLR 49 409 0 2129 139 0 7 chr6 133388317 133388627 -55890927 - AluSx SINE Alu -2 310 3 214 260 0 0 chr6 133392435 133392485 -55887069 + MIR SINE MIR 92 141 -67 790 193 0 14 chr6 133392755 133392895 -55886659 - AluSq/x SINE Alu -172 140 3 2398 84 0 3 chr6 133393394 133393692 -55885862 - AluSg1 SINE Alu -12 297 1 1431 255 88 10 chr6 133394495 133394989 -55884565 + L2 LINE L2 2458 2986 -327 721 196 179 41 chr6 133395024 133395381 -55884173 - MLT1J LTR MaLR -43 468 5 568 284 99 38 chr6 133395386 133395678 -55883876 + L2 LINE L2 2997 3306 -7 2076 135 0 49 chr6 133395678 133396004 -55883550 + AluSx SINE Alu 1 310 -2 1939 169 39 6 chr6 133397762 133398099 -55881455 + MER7A DNA MER2_type 1 346 0 1842 199 100 30 chr6 133398305 133398777 -55880777 - MLT1D LTR MaLR 0 505 1 2348 110 0 3 chr6 133398875 133399183 -55880371 + AluSx SINE Alu 1 307 -5 234 0 0 0 chr6 133399213 133399239 -55880315 + (CA)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr6 133399352 133399373 -55880181 + (A)n Simple_repeat Simple_repeat 1 21 0 2213 121 0 0 chr6 133399712 133400019 -55879535 - AluSg SINE Alu -2 308 2 350 287 30 46 chr6 133400027 133400225 -55879329 - MIR SINE MIR -50 212 20 205 200 25 0 chr6 133400578 133400618 -55878936 + (TCCA)n Simple_repeat Simple_repeat 2 42 0 189 274 188 43 chr6 133400618 133400735 -55878819 - L2 LINE L2 0 3272 3139 1309 197 12 15 chr6 133401625 133401950 -55877604 - MER33 DNA MER1_type 0 324 1 2495 65 0 0 chr6 133402120 133402427 -55877127 + AluY SINE Alu 1 307 -4 693 269 96 36 chr6 133402499 133402940 -55876614 - LTR33A LTR ERVL -17 506 1 636 288 35 0 chr6 133403284 133403513 -55876041 - L2 LINE L2 -925 2389 2153 1738 144 46 36 chr6 133404197 133404502 -55875052 + AluJb SINE Alu 3 310 -2 256 263 0 0 chr6 133405550 133405635 -55873919 + (TATG)n Simple_repeat Simple_repeat 1 85 0 2032 132 0 42 chr6 133406734 133407044 -55872510 - AluSx SINE Alu -15 297 1 24 32 0 0 chr6 133407176 133407207 -55872347 + AT_rich Low_complexity Low_complexity 1 31 0 275 211 68 68 chr6 133407307 133407440 -55872114 - L1ME LINE L1 -328 5793 5661 557 0 29 0 chr6 133407525 133407593 -55871961 + (TTTTA)n Simple_repeat Simple_repeat 3 72 0 2089 112 0 4 chr6 133407595 133407873 -55871681 - AluSx SINE Alu -35 277 1 2525 62 10 3 chr6 133407912 133408221 -55871333 - AluSq SINE Alu -2 311 1 1137 237 12 7 chr6 133408407 133408894 -55870660 - MER82 DNA MER2_type 0 653 125 1643 173 17 28 chr6 133408897 133409186 -55870368 + AluJb SINE Alu 6 291 -21 697 61 86 0 chr6 133409186 133409349 -55870205 + (TA)n Simple_repeat Simple_repeat 2 178 0 381 22 0 0 chr6 133412335 133412381 -55867173 + (TG)n Simple_repeat Simple_repeat 2 47 0 262 271 221 0 chr6 133412979 133413101 -55866453 - MIR SINE MIR -30 232 84 666 236 69 15 chr6 133413103 133413306 -55866248 - LTR37A LTR ERV1 -125 301 88 553 200 48 8 chr6 133413316 133413441 -55866113 + FLAM_C SINE Alu 14 143 0 1770 103 110 14 chr6 133415807 133416088 -55863466 - AluSg SINE Alu -2 308 1 4182 236 64 47 chr6 133416466 133416686 -55862868 - L2 LINE L2 0 3313 3098 575 142 137 146 chr6 133416686 133416822 -55862732 - MER63A DNA MER1_type -1478 210 75 2055 112 31 7 chr6 133416822 133417116 -55862438 + AluJb SINE Alu 5 305 -7 575 142 137 146 chr6 133417116 133417191 -55862363 - MER63A DNA MER1_type -1613 75 1 4182 236 64 47 chr6 133417191 133417523 -55862031 - L2 LINE L2 -215 3098 2773 288 0 0 0 chr6 133417523 133417555 -55861999 + (TG)n Simple_repeat Simple_repeat 1 32 0 2087 98 11 4 chr6 133417555 133417832 -55861722 - AluSq SINE Alu -33 280 2 4182 236 64 47 chr6 133417832 133418912 -55860642 - L2 LINE L2 -539 2774 1636 1954 155 0 7 chr6 133419352 133419655 -55859899 - AluJo SINE Alu -11 301 1 1803 150 49 0 chr6 133419743 133420029 -55859525 - AluJb SINE Alu -2 310 11 2299 106 3 3 chr6 133420204 133420507 -55859047 - AluSx SINE Alu -9 303 1 1700 142 32 32 chr6 133420513 133420822 -55858732 - AluSx SINE Alu -3 309 1 2324 163 2 25 chr6 133422706 133422948 -55856606 - MLT1B LTR MaLR 0 390 159 2436 93 0 0 chr6 133422948 133423248 -55856306 + AluSc SINE Alu 1 300 -9 2324 163 2 25 chr6 133423248 133423404 -55856150 - MLT1B LTR MaLR -231 159 1 2430 189 18 113 chr6 133423606 133423644 -55855910 + MLT2B3 LTR ERVL 1 41 -513 2136 112 23 3 chr6 133423644 133423947 -55855607 + AluSq SINE Alu 1 309 -4 2430 189 18 113 chr6 133423947 133424454 -55855100 + MLT2B3 LTR ERVL 41 484 -70 399 21 0 0 chr6 133424454 133424502 -55855052 + (TG)n Simple_repeat Simple_repeat 2 49 0 2430 189 18 113 chr6 133424502 133424567 -55854987 + MLT2B3 LTR ERVL 484 554 0 1832 274 127 55 chr6 133425030 133426905 -55852649 + L1MC/D LINE L1 3000 5008 -1138 309 250 49 85 chr6 133426914 133426952 -55852602 + L1MC/D LINE L1 5417 5455 -707 2251 104 0 0 chr6 133426952 133427241 -55852313 - AluSc SINE Alu -20 289 1 2168 138 0 0 chr6 133427241 133427545 -55852009 - AluSx SINE Alu -8 304 1 309 250 49 85 chr6 133427545 133427671 -55851883 + L1MC/D LINE L1 5759 5574 -588 284 252 14 136 chr6 133427743 133427890 -55851664 + MLT1L LTR MaLR 135 263 -352 3123 108 18 26 chr6 133428044 133428386 -55851168 - L1PA16 LINE L1 0 6166 5828 2387 84 7 0 chr6 133428386 133428683 -55850871 - AluSq SINE Alu -14 299 1 3123 108 18 26 chr6 133428683 133428833 -55850721 - L1PA16 LINE L1 -338 5828 5678 474 268 60 33 chr6 133428853 133429075 -55850479 + MLT1L LTR MaLR 311 600 -15 2417 51 41 0 chr6 133429696 133429988 -55849566 - AluY SINE Alu -7 304 1 220 261 31 0 chr6 133430436 133430501 -55849053 + (TATAG)n Simple_repeat Simple_repeat 3 69 0 273 310 103 22 chr6 133430924 133431108 -55848446 - L2 LINE L2 -864 2450 2252 5521 108 49 16 chr6 133431257 133432135 -55847419 + L1PA16 LINE L1 5260 6166 0 2008 190 137 5 chr6 133432142 133432564 -55846990 - MLT1D LTR MaLR -27 478 1 1836 157 3 20 chr6 133434139 133434445 -55845109 - AluJo SINE Alu -5 307 7 2303 125 0 0 chr6 133435530 133435842 -55843712 - AluSx SINE Alu 0 312 1 37 23 0 0 chr6 133435885 133435929 -55843625 + AT_rich Low_complexity Low_complexity 1 44 0 699 79 11 0 chr6 133436591 133436680 -55842874 - Tigger3b DNA MER2_type -33 1198 1109 1139 232 52 80 chr6 133436690 133437155 -55842399 - MER101 LTR ERV1 -12 462 11 5566 134 74 39 chr6 133437187 133437399 -55842155 - Tigger3b DNA MER2_type -1928 1100 897 200 86 29 0 chr6 133437399 133437434 -55842120 + (TGAG)n Simple_repeat Simple_repeat 1 36 0 5566 134 74 39 chr6 133437434 133437950 -55841604 - Tigger3b DNA MER2_type -2131 897 320 2316 108 0 7 chr6 133437950 133438255 -55841299 - AluSx SINE Alu -9 303 1 5566 134 74 39 chr6 133438255 133438587 -55840967 - Tigger3b DNA MER2_type -2708 320 1 214 307 27 0 chr6 133438590 133438665 -55840889 + MIR SINE MIR 112 188 -74 593 285 55 17 chr6 133438684 133438919 -55840635 + MIR SINE MIR 19 262 0 1077 184 5 0 chr6 133440026 133440227 -55839327 + L1MB4 LINE L1 5973 6174 -6 212 291 23 0 chr6 133441083 133441169 -55838385 + CT-rich Low_complexity Low_complexity 1 88 0 212 211 16 148 chr6 133441243 133441371 -55838183 - MIR SINE MIR -64 198 88 203 156 0 0 chr6 133441600 133441632 -55837922 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 2138 108 0 78 chr6 133441796 133442163 -55837391 - AluSx SINE Alu 0 312 1 23 0 0 0 chr6 133442428 133442451 -55837103 + AT_rich Low_complexity Low_complexity 1 23 0 999 224 59 30 chr6 133442930 133443225 -55836329 + L1MB7 LINE L1 5878 6179 -5 2502 97 0 0 chr6 133444107 133444417 -55835137 + AluSx SINE Alu 1 310 -2 797 274 67 16 chr6 133444452 133444825 -55834729 + L1ME4a LINE L1 5552 5943 -178 180 111 0 0 chr6 133444828 133444855 -55834699 + (TG)n Simple_repeat Simple_repeat 1 27 0 851 305 88 3 chr6 133444912 133445243 -55834311 + LTR16A LTR ERVL 90 448 -2 1236 236 135 24 chr6 133446096 133446519 -55833035 + MLT1J LTR MaLR 1 470 -41 2053 146 0 9 chr6 133447175 133447490 -55832064 - AluSx SINE Alu 0 312 1 803 243 55 5 chr6 133448009 133448211 -55831343 - MER58C DNA MER1_type -3 212 1 1888 120 36 7 chr6 133448313 133448625 -55830929 + AluSx SINE Alu 1 320 0 21 36 0 0 chr6 133449513 133449541 -55830013 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr6 133450423 133450453 -55829101 + (CA)n Simple_repeat Simple_repeat 2 31 0 275 49 24 0 chr6 133451120 133451161 -55828393 + (TG)n Simple_repeat Simple_repeat 2 43 0 2527 11 42 7 chr6 133452005 133452291 -55827263 + AluY SINE Alu 1 296 -15 1622 226 76 29 chr6 133452621 133453042 -55826512 + LTR40a LTR ERVL 79 519 0 1681 166 0 21 chr6 133453278 133453568 -55825986 + AluJo SINE Alu 1 284 -28 2301 117 0 0 chr6 133454422 133454731 -55824823 + AluSc SINE Alu 1 309 0 917 103 0 0 chr6 133455780 133455906 -55823648 - AluSg/x SINE Alu 0 309 184 1873 140 27 3 chr6 133456335 133456627 -55822927 + AluSx SINE Alu 1 299 -13 1960 145 20 81 chr6 133457350 133457561 -55821993 - MLT1B LTR MaLR 0 390 213 2555 102 11 6 chr6 133457561 133457923 -55821631 - THE1B LTR MaLR 0 364 1 1960 145 20 81 chr6 133457923 133458105 -55821449 - MLT1B LTR MaLR -177 213 21 2085 150 118 0 chr6 133458124 133458505 -55821049 - MSTA LTR MaLR -2 426 1 435 317 60 0 chr6 133458575 133458742 -55820812 + MIR SINE MIR 17 193 -69 2319 102 3 0 chr6 133458940 133459244 -55820310 - AluSq SINE Alu -8 305 1 3386 71 21 5 chr6 133459807 133460203 -55819351 + MLT2A1 LTR ERVL 1 406 -38 225 0 0 0 chr6 133460203 133460228 -55819326 + (TA)n Simple_repeat Simple_repeat 1 25 0 3386 71 21 5 chr6 133460228 133460268 -55819286 + MLT2A1 LTR ERVL 406 444 0 1073 154 10 77 chr6 133460430 133460638 -55818916 + MLT1A1 LTR MaLR 1 194 -171 1056 210 0 5 chr6 133460641 133460836 -55818718 + MLT1A1 LTR MaLR 167 360 -5 366 220 22 11 chr6 133461156 133461247 -55818307 - LTR67 LTR ERVL -9 548 457 2146 141 7 0 chr6 133461273 133461577 -55817977 + AluSx SINE Alu 1 306 -6 180 234 43 0 chr6 133461958 133462005 -55817549 + L2 LINE L2 3204 3252 -20 196 267 22 0 chr6 133462149 133462194 -55817360 - L2 LINE L2 -16 3256 3211 4299 98 2 8 chr6 133462234 133462835 -55816719 + L1P LINE L1 1 597 -5549 18667 36 0 0 chr6 133462835 133465866 -55813688 + L1PA4 LINE L1 3142 6186 0 454 250 8 33 chr6 133465868 133465988 -55813566 + L2 LINE L2 3145 3261 -11 472 250 101 36 chr6 133467452 133467620 -55811934 + MIR SINE MIR 15 193 -69 4118 112 68 30 chr6 133467655 133468118 -55811436 - Tigger3(Golem) DNA MER2_type 0 3029 2528 1475 169 90 4 chr6 133468118 133468384 -55811170 + AluJo SINE Alu 1 289 -23 4118 112 68 30 chr6 133468384 133468645 -55810909 - Tigger3(Golem) DNA MER2_type -501 2528 2278 571 234 0 0 chr6 133468636 133468743 -55810811 - Tigger3(Golem) DNA MER2_type -2921 108 2 * 228 250 0 0 chr6 133468764 133468804 -55810750 + L2 LINE L2 3210 3249 -23 1155 103 0 0 chr6 133468987 133469133 -55810421 - AluSq/x SINE Alu -167 146 1 1597 188 0 56 chr6 133469637 133469957 -55809597 + AluJo SINE Alu 1 302 -10 476 234 9 0 chr6 133470185 133470292 -55809262 - L2 LINE L2 -6 3307 3200 1038 198 65 9 chr6 133470301 133470518 -55809036 - MER96B DNA MER1_type? -185 232 4 703 244 15 20 chr6 133470541 133470742 -55808812 + LTR16A LTR ERVL 14 213 -237 455 302 82 13 chr6 133470750 133470909 -55808645 + HERV16 LTR ERVL 1407 1576 -3420 733 184 20 20 chr6 133470928 133471080 -55808474 + MER5A DNA MER1_type 1 152 -37 1563 104 0 43 chr6 133471145 133471375 -55808179 + AluSg/x SINE Alu 85 304 -8 795 271 99 44 chr6 133471450 133471815 -55807739 + HERV16 LTR ERVL 2095 2479 -2517 2876 242 192 26 chr6 133471920 133472044 -55807510 - L2 LINE L2 -145 3168 3066 2073 113 39 0 chr6 133472044 133472326 -55807228 - AluSx SINE Alu -19 293 1 2876 242 192 26 chr6 133472326 133473685 -55805869 - L2 LINE L2 -247 3066 1433 596 266 30 0 chr6 133473761 133473930 -55805624 + MIR SINE MIR 71 244 -18 1725 135 0 12 chr6 133475800 133476052 -55803502 - AluSx SINE Alu -16 296 48 2357 103 0 0 chr6 133477408 133477710 -55801844 - AluSx SINE Alu -10 302 1 502 258 71 38 chr6 133477993 133478233 -55801321 + L1MC4 LINE L1 6765 7012 -1030 1252 136 77 27 chr6 133478297 133478518 -55801036 + MER46A DNA MER2_type 1 232 -4 1039 166 0 6 chr6 133479840 133480003 -55799551 - FRAM SINE Alu -15 161 1 28965 115 13 52 chr6 133483066 133489494 -55790060 - L1PA8 LINE L1 -2 6170 12 257 230 50 50 chr6 133489763 133489902 -55789652 + L1ME4a LINE L1 5982 6120 -1 731 89 0 0 chr6 133489979 133490080 -55789474 - AluSg/x SINE Alu -7 305 205 1937 97 109 0 chr6 133490274 133490541 -55789013 - AluSq SINE Alu -17 296 1 440 250 12 79 chr6 133491764 133491928 -55787626 + MLT1G1 LTR MaLR 443 595 0 269 231 0 15 chr6 133493440 133493505 -55786049 + MER20B DNA MER1_type 66 129 -654 247 298 61 53 chr6 133493739 133493853 -55785701 + L2 LINE L2 3153 3267 -5 2180 116 3 0 chr6 133494323 133494617 -55784937 - AluSx SINE Alu -17 295 1 202 373 91 9 chr6 133495387 133495497 -55784057 - L2 LINE L2 -7 3265 3147 203 213 21 0 chr6 133495796 133495843 -55783711 + GA-rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr6 133496833 133496862 -55782692 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr6 133497573 133497603 -55781951 + AT_rich Low_complexity Low_complexity 1 30 0 1536 160 27 40 chr6 133497778 133498078 -55781476 - AluJo SINE Alu -16 296 1 23 33 0 0 chr6 133498377 133498407 -55781147 + AT_rich Low_complexity Low_complexity 1 30 0 397 309 106 14 chr6 133499025 133499232 -55780322 + MIR SINE MIR 23 248 -14 260 237 129 36 chr6 133499340 133499367 -55780187 + L2 LINE L2 1890 1913 -1401 2084 106 31 0 chr6 133499367 133499659 -55779895 - AluSx SINE Alu -11 301 1 260 237 129 36 chr6 133499659 133499770 -55779784 + L2 LINE L2 1913 2041 -1273 214 282 97 39 chr6 133499820 133499923 -55779631 + L2 LINE L2 2170 2278 -1036 1363 241 88 41 chr6 133499945 133500448 -55779106 + L2 LINE L2 2467 2985 -287 197 218 36 18 chr6 133500530 133500585 -55778969 + L2 LINE L2 3215 3270 -2 449 234 103 7 chr6 133501318 133501463 -55778091 + MER103 DNA DNA 3 161 -5 289 221 118 59 chr6 133503152 133503288 -55776266 + MIR SINE MIR 54 197 -65 224 361 45 32 chr6 133504524 133504679 -55774875 - L2 LINE L2 -191 3081 2925 902 131 0 0 chr6 133504704 133504826 -55774728 - AluJb SINE Alu -188 124 3 2283 114 0 0 chr6 133505780 133506077 -55773477 - AluSc SINE Alu -12 297 1 2106 138 0 0 chr6 133507022 133507312 -55772242 - AluSx SINE Alu -20 292 3 2410 100 0 0 chr6 133510776 133511077 -55768477 + AluSx SINE Alu 1 301 -11 334 208 101 54 chr6 133511106 133511255 -55768299 + MER112 DNA MER1_type 94 249 -11 23 0 0 0 chr6 133511981 133512004 -55767550 + AT_rich Low_complexity Low_complexity 1 23 0 717 136 72 8 chr6 133512978 133513103 -55766451 + FLAM_C SINE Alu 1 133 -10 1883 117 8 11 chr6 133514552 133514818 -55764736 - AluJo SINE Alu -23 289 25 843 245 56 44 chr6 133515739 133515988 -55763566 + MIR SINE MIR 8 259 -3 666 114 84 69 chr6 133517023 133517154 -55762400 + FLAM_C SINE Alu 1 133 0 21 36 0 0 chr6 133517157 133517185 -55762369 + AT_rich Low_complexity Low_complexity 1 28 0 1267 117 0 0 chr6 133517374 133517589 -55761965 - AluSg/x SINE Alu 0 324 110 1204 105 0 0 chr6 133517591 133517743 -55761811 - AluSq/x SINE Alu -160 152 1 739 304 57 20 chr6 133520193 133520445 -55759109 + MIR SINE MIR 5 262 0 581 208 8 24 chr6 133521257 133521401 -55758153 + MLT1A2 LTR MaLR 229 356 -18 2560 161 7 5 chr6 133521401 133521824 -55757730 + MSTB LTR MaLR 1 424 -2 581 208 8 24 chr6 133521824 133521843 -55757711 + MLT1A2 LTR MaLR 356 374 0 539 313 193 21 chr6 133522039 133522521 -55757033 - L3 LINE CR1 -7 1570 1006 316 291 158 32 chr6 133522625 133522783 -55756771 + MIR3 SINE MIR 8 185 -23 402 274 117 100 chr6 133523398 133523691 -55755863 + MLT1J LTR MaLR 48 351 -160 2197 119 10 10 chr6 133523691 133524003 -55755551 + AluSx SINE Alu 1 312 0 402 274 117 100 chr6 133524003 133524110 -55755444 + MLT1J LTR MaLR 351 455 -56 983 178 0 6 chr6 133524227 133524390 -55755164 - FRAM SINE Alu -14 162 1 1436 187 65 4 chr6 133525719 133525997 -55753557 + AluJo SINE Alu 1 295 -17 193 239 14 14 chr6 133526000 133526071 -55753483 + GA-rich Low_complexity Low_complexity 4 74 0 1259 160 22 0 chr6 133526877 133527108 -55752446 - L1MB7 LINE L1 -23 6161 5926 1988 129 24 12 chr6 133527113 133527447 -55752107 - MER47A DNA MER2_type -1 365 28 1674 161 16 3 chr6 133527453 133527763 -55751791 - L1MB7 LINE L1 -258 5926 5613 36 0 0 0 chr6 133527763 133527799 -55751755 + AT_rich Low_complexity Low_complexity 1 36 0 2406 95 0 6 chr6 133528263 133528578 -55750976 + AluSp SINE Alu 1 313 0 233 305 106 58 chr6 133528811 133529037 -55750517 + L2 LINE L2 2686 2922 -392 783 240 70 62 chr6 133529049 133529071 -55750483 + MIR SINE MIR 13 33 -229 2201 108 3 0 chr6 133529071 133529366 -55750188 + AluSx SINE Alu 1 296 -16 783 240 70 62 chr6 133529366 133529519 -55750035 + MIR SINE MIR 33 193 -69 1887 133 7 31 chr6 133529519 133529812 -55749742 + AluJo SINE Alu 13 298 -14 783 240 70 62 chr6 133529812 133529877 -55749677 + MIR SINE MIR 193 256 -6 2150 130 0 0 chr6 133529879 133530172 -55749382 + AluSx SINE Alu 1 293 -19 707 185 8 8 chr6 133530632 133530751 -55748803 + FLAM_C SINE Alu 1 119 -14 225 0 0 0 chr6 133531027 133531052 -55748502 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2485 50 0 7 chr6 133531054 133531353 -55748201 - AluY SINE Alu -14 297 1 280 333 81 9 chr6 133531561 133531672 -55747882 - MIR SINE MIR -68 140 22 1765 161 81 9 chr6 133532987 133533309 -55746245 + MER7A DNA MER2_type 1 343 -3 2379 52 3 23 chr6 133534159 133534469 -55745085 + AluY SINE Alu 1 304 -7 27 96 0 0 chr6 133535424 133535507 -55744047 + GC_rich Low_complexity Low_complexity 1 83 0 200 143 24 0 chr6 133536112 133536154 -55743400 + (CGGAG)n Simple_repeat Simple_repeat 4 46 0 1727 239 70 13 chr6 133536256 133536870 -55742684 - L1M4 LINE L1 -1034 5112 4464 2475 103 8 0 chr6 133536895 133537262 -55742292 - THE1C LTR MaLR -5 370 1 1814 157 160 0 chr6 133537361 133537730 -55741824 - MSTB1 LTR MaLR 0 432 5 1167 172 0 41 chr6 133537761 133537892 -55741662 - AluJb SINE Alu -17 295 175 1615 123 153 96 chr6 133537892 133538297 -55741257 + MSTA LTR MaLR 1 428 0 1167 172 0 41 chr6 133538297 133538386 -55741168 - AluJb SINE Alu -137 175 84 1240 249 34 16 chr6 133538386 133538837 -55740717 - L1M4 LINE L1 -1818 4328 3850 1726 172 78 70 chr6 133538837 133539010 -55740544 + MLT1C LTR MaLR 4 174 -293 2313 90 0 13 chr6 133539010 133539310 -55740244 + AluSc SINE Alu 1 296 -13 1726 172 78 70 chr6 133539310 133539596 -55739958 + MLT1C LTR MaLR 174 467 0 1240 249 34 16 chr6 133539596 133539692 -55739862 - L1M4 LINE L1 -2296 3850 3757 2723 52 0 0 chr6 133539711 133540040 -55739514 - L1PA7 LINE L1 -11 6143 5815 20032 144 28 27 chr6 133540267 133542412 -55737142 + L1M1 LINE L1 19 2160 -5405 2215 97 0 0 chr6 133542412 133542711 -55736843 + AluSc SINE Alu 1 299 0 20032 144 28 27 chr6 133542711 133543585 -55735969 + L1M1 LINE L1 2160 3031 -4534 2011 134 3 22 chr6 133543585 133543899 -55735655 + AluSx SINE Alu 1 308 -4 20032 144 28 27 chr6 133543899 133543911 -55735643 + L1M1 LINE L1 3031 3041 -4524 2138 131 0 0 chr6 133543911 133544202 -55735352 + AluSx SINE Alu 20 310 -2 20032 144 28 27 chr6 133544202 133545023 -55734531 + L1M1 LINE L1 3041 3879 -3686 3264 199 23 9 chr6 133544998 133545795 -55733759 + L1M1 LINE L1 4086 4893 -2672 * 8764 196 48 45 chr6 133545774 133547275 -55732279 + L1MA3 LINE L1 1408 2902 -4119 2268 108 0 0 chr6 133547275 133547571 -55731983 + AluY SINE Alu 2 297 -14 8764 196 48 45 chr6 133547571 133548866 -55730688 + L1MA3 LINE L1 2902 4191 -2830 1924 173 0 3 chr6 133548866 133549178 -55730376 - AluJb SINE Alu -1 311 1 8764 196 48 45 chr6 133549178 133549257 -55730297 + L1MA3 LINE L1 4191 4268 -2753 2367 65 10 3 chr6 133549257 133549565 -55729989 + AluY SINE Alu 1 310 -1 8764 196 48 45 chr6 133549565 133551502 -55728052 + L1MA3 LINE L1 4268 6198 -823 2163 102 3 44 chr6 133551502 133551817 -55727737 + AluSq SINE Alu 1 302 -11 8764 196 48 45 chr6 133551817 133552294 -55727260 + L1MA3 LINE L1 6198 6672 -349 528 137 42 11 chr6 133552294 133552389 -55727165 + MER4A LTR ERV1 1 98 -566 1444 105 65 89 chr6 133552389 133552743 -55726811 + MER4A LTR ERV1 261 664 0 3015 163 14 14 chr6 133552759 133553391 -55726163 - L1 LINE L1 -1097 5049 4418 1049 202 22 0 chr6 133553690 133553918 -55725636 + L1ME2 LINE L1 5685 5917 -247 1958 77 62 0 chr6 133553918 133554191 -55725363 - L1PA11 LINE L1 0 6174 5885 317 245 174 0 chr6 133555619 133555717 -55723837 + L2 LINE L2 3199 3313 0 771 179 0 8 chr6 133555834 133555968 -55723586 + FLAM_A SINE Alu 1 133 0 3458 182 72 32 chr6 133556303 133557166 -55722388 - L1MB4 LINE L1 -6 6174 5242 1673 144 38 41 chr6 133557166 133557458 -55722096 - AluJo SINE Alu -19 293 3 3458 182 72 32 chr6 133557458 133557913 -55721641 - L1MB4 LINE L1 -938 5242 4806 1729 161 51 10 chr6 133558130 133558422 -55721132 + AluJb SINE Alu 8 311 -1 410 355 118 0 chr6 133559223 133559485 -55720069 + L2 LINE L2 1042 1334 -1980 209 238 159 16 chr6 133559499 133559625 -55719929 - MIR SINE MIR -43 219 76 269 280 183 0 chr6 133559625 133559718 -55719836 + L3 LINE CR1 1415 1524 -53 * 643 316 164 21 chr6 133559712 133560323 -55719231 + L2 LINE L2 1602 2299 -1015 25 0 0 0 chr6 133560717 133560742 -55718812 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr6 133562170 133562204 -55717350 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr6 133562266 133562293 -55717261 + AT_rich Low_complexity Low_complexity 1 27 0 323 225 14 0 chr6 133564359 133564430 -55715124 - L2 LINE L2 -2 3311 3240 204 40 0 0 chr6 133564703 133564728 -55714826 + (TA)n Simple_repeat Simple_repeat 1 25 0 727 203 0 0 chr6 133564985 133565118 -55714436 + FLAM_A SINE Alu 1 133 0 752 184 0 57 chr6 133566148 133566289 -55713265 - FLAM_C SINE Alu 0 133 1 21 0 0 0 chr6 133567599 133567620 -55711934 + AT_rich Low_complexity Low_complexity 1 21 0 1480 105 50 0 chr6 133569110 133569329 -55710225 + MER30 DNA MER1_type 1 230 0 2727 91 13 11 chr6 133569878 133570252 -55709302 + THE1C LTR MaLR 1 375 0 1802 75 51 0 chr6 133570600 133570855 -55708699 - L1PA7 LINE L1 0 6154 5887 396 192 119 111 chr6 133570882 133570923 -55708631 - MER113 DNA MER1_type? -127 394 355 212 0 36 0 chr6 133570923 133570951 -55708603 + (TA)n Simple_repeat Simple_repeat 1 29 0 2272 108 0 3 chr6 133570951 133571246 -55708308 - AluSx SINE Alu -18 294 1 396 192 119 111 chr6 133571246 133571589 -55707965 - MER113 DNA MER1_type? -165 356 6 213 234 0 21 chr6 133571658 133571705 -55707849 + GA-rich Low_complexity Low_complexity 5 50 0 865 233 24 10 chr6 133573132 133573338 -55706216 - MER3 DNA MER1_type 0 209 1 180 152 0 0 chr6 133574173 133574206 -55705348 + (TG)n Simple_repeat Simple_repeat 2 34 0 262 270 45 0 chr6 133576341 133576430 -55703124 - MIR3 SINE MIR -5 203 111 413 221 40 67 chr6 133576580 133576729 -55702825 + MLT1G LTR MaLR 446 590 0 269 231 0 15 chr6 133578241 133578306 -55701248 + MER20B DNA MER1_type 66 129 -654 247 298 61 53 chr6 133578540 133578654 -55700900 + L2 LINE L2 3153 3267 -5 2168 119 3 0 chr6 133579124 133579418 -55700136 - AluSx SINE Alu -17 295 1 202 373 91 9 chr6 133580188 133580298 -55699256 - L2 LINE L2 -7 3265 3147 26 0 0 0 chr6 133581431 133581457 -55698097 + AT_rich Low_complexity Low_complexity 1 26 0 1423 166 50 0 chr6 133581851 133582092 -55697462 + AluSx SINE Alu 52 304 -8 505 263 110 12 chr6 133582551 133582754 -55696800 - MIR SINE MIR -37 225 3 1768 170 3 17 chr6 133582798 133583092 -55696462 - AluJo SINE Alu -22 290 1 248 139 0 0 chr6 133583153 133583189 -55696365 + MIR SINE MIR 216 251 -11 321 151 35 70 chr6 133583503 133583589 -55695965 + L2 LINE L2 2171 2253 -1061 716 279 135 9 chr6 133583602 133583928 -55695626 + MLT1J2 LTR MaLR 15 381 -69 1954 168 17 15 chr6 133584202 133584606 -55694948 + L1MB2 LINE L1 5688 6092 -79 28708 97 17 24 chr6 133584614 133588884 -55690670 - L1PA7 LINE L1 -8 6461 2162 2053 113 10 7 chr6 133588884 133589186 -55690368 - AluY SINE Alu -8 303 1 371 89 0 0 chr6 133589186 133589242 -55690312 - AluSc SINE Alu -168 131 76 1510 97 24 0 chr6 133589242 133589448 -55690106 - AluY SINE Alu -100 211 1 28708 97 17 24 chr6 133589448 133590854 -55688700 - L1PA7 LINE L1 -4304 2165 763 675 169 15 0 chr6 133590936 133591066 -55688488 + MLT1A2 LTR MaLR 1 132 -242 245 159 71 0 chr6 133591082 133591140 -55688414 + MLT1J1 LTR MaLR 355 432 -18 1870 141 10 43 chr6 133591470 133591775 -55687779 - AluJo SINE Alu -17 295 1 228 303 61 30 chr6 133592230 133592329 -55687225 - MER5A DNA MER1_type 0 189 88 2291 91 0 0 chr6 133592563 133592860 -55686694 - AluSg SINE Alu -13 297 1 1761 161 4 0 chr6 133593270 133593543 -55686011 - AluJo SINE Alu -35 277 4 2067 106 40 0 chr6 133594074 133594370 -55685184 + AluSp SINE Alu 1 307 0 711 90 0 0 chr6 133594369 133594469 -55685085 + (TA)n Simple_repeat Simple_repeat 2 101 0 22 35 0 0 chr6 133595262 133595291 -55684263 + AT_rich Low_complexity Low_complexity 1 29 0 198 283 162 61 chr6 133596086 133596185 -55683369 - MIR SINE MIR -142 120 12 437 294 120 11 chr6 133596566 133596750 -55682804 - L3 LINE CR1 -156 1421 1218 1200 185 74 7 chr6 133597902 133598172 -55681382 + L1PA16 LINE L1 5879 6166 0 579 283 138 35 chr6 133598462 133598946 -55680608 + HAL1b LINE L1 276 809 -539 704 172 71 139 chr6 133599113 133599351 -55680203 + MER58A DNA MER1_type 2 223 -1 1958 138 10 3 chr6 133599369 133599660 -55679894 + AluSx SINE Alu 1 293 -19 369 315 100 16 chr6 133599725 133599976 -55679578 + L1MD1 LINE L1 2125 2396 -3750 262 311 86 33 chr6 133600003 133600159 -55679395 + L1MD1 LINE L1 2481 2627 -3519 207 0 0 0 chr6 133600159 133600182 -55679372 + (TG)n Simple_repeat Simple_repeat 2 24 0 262 311 86 33 chr6 133600182 133600511 -55679043 + L1MD1 LINE L1 2627 2992 -3154 * 505 247 97 95 chr6 133600502 133600882 -55678672 + L1MC4a LINE L1 5881 6261 -1547 1581 169 35 11 chr6 133601564 133601848 -55677706 - AluJo SINE Alu -21 291 1 1881 160 48 0 chr6 133602666 133602997 -55676557 - MER7A DNA MER2_type 0 346 2 408 231 39 0 chr6 133603330 133603434 -55676120 + MER5C DNA MER1_type 52 159 -165 22 0 0 0 chr6 133603441 133603463 -55676091 + AT_rich Low_complexity Low_complexity 1 22 0 1323 201 25 44 chr6 133603511 133603875 -55675679 - L1ME1 LINE L1 -147 6019 5663 * 2741 204 96 77 chr6 133603869 133604247 -55675307 - L1ME1 LINE L1 -1206 4940 4571 1639 170 31 21 chr6 133604247 133604535 -55675019 + AluJo SINE Alu 1 291 -21 2741 204 96 77 chr6 133604535 133605074 -55674480 - L1ME1 LINE L1 -1575 4571 3993 2102 121 3 7 chr6 133605074 133605380 -55674174 - AluSx SINE Alu -7 305 1 2741 204 96 77 chr6 133605380 133605636 -55673918 - L1ME1 LINE L1 -2153 3993 3743 379 237 61 8 chr6 133605636 133605767 -55673787 + MER5C DNA MER1_type 186 323 -1 346 333 78 31 chr6 133606053 133606182 -55673372 + L2 LINE L2 3137 3271 -1 1863 171 3 10 chr6 133607324 133607622 -55671932 + AluJb SINE Alu 1 296 -16 481 302 49 20 chr6 133608073 133608318 -55671236 + MIR SINE MIR 2 253 -9 4179 226 103 44 chr6 133608324 133610061 -55669493 + L1MD1 LINE L1 3223 5061 -1085 278 157 0 0 chr6 133610167 133610218 -55669336 + Alu SINE Alu 243 293 -9 23 92 0 0 chr6 133610524 133610589 -55668965 + AT_rich Low_complexity Low_complexity 1 65 0 2151 133 0 3 chr6 133610828 133611128 -55668426 + AluSx SINE Alu 1 299 -13 3236 175 58 49 chr6 133611246 133611752 -55667802 + L1MD1 LINE L1 5384 5901 -341 1707 167 7 4 chr6 133611752 133612027 -55667527 + AluJb SINE Alu 5 280 -32 3236 175 58 49 chr6 133612027 133612370 -55667184 + L1MD1 LINE L1 5901 6240 -2 2088 126 3 0 chr6 133612403 133612711 -55666843 - AluSp SINE Alu 0 309 1 1924 151 10 26 chr6 133614209 133614514 -55665040 + AluJo SINE Alu 1 300 -12 191 242 0 0 chr6 133615219 133615252 -55664302 + MIR SINE MIR 48 80 -182 266 257 0 40 chr6 133615274 133615348 -55664206 + MIR SINE MIR 192 262 0 846 176 0 0 chr6 133615888 133616024 -55663530 - AluJo SINE Alu -171 141 6 896 174 52 0 chr6 133616037 133616192 -55663362 - AluJo SINE Alu -24 288 126 834 144 83 44 chr6 133616513 133616694 -55662860 - MER5A DNA MER1_type -1 188 1 879 172 21 0 chr6 133616865 133617010 -55662544 - FAM SINE Alu -18 167 20 894 344 171 13 chr6 133618263 133619245 -55660309 + L2 LINE L2 1750 2886 -428 188 100 33 0 chr6 133619392 133619422 -55660132 + MIR SINE MIR 162 192 -70 199 262 0 0 chr6 133619435 133619477 -55660077 + L2 LINE L2 3016 3057 -215 207 69 0 0 chr6 133619477 133619506 -55660048 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 2029 209 24 5 chr6 133619603 133620015 -55659539 - MSTB LTR MaLR 0 426 7 2538 58 0 0 chr6 133620211 133620506 -55659048 - AluY SINE Alu -16 295 1 4208 129 16 126 chr6 133621032 133622579 -55656975 - pTR5 LTR ERV1 0 2606 1524 2286 118 0 16 chr6 133622630 133622945 -55656609 - AluSx SINE Alu -2 310 1 283 317 170 9 chr6 133623281 133623505 -55656049 + MIR SINE MIR 1 260 -2 247 310 232 0 chr6 133623511 133623666 -55655888 - MIR SINE MIR -25 237 47 2035 163 69 108 chr6 133624855 133625438 -55654116 + MER68 LTR ERV1 3 562 0 326 357 101 52 chr6 133625452 133625839 -55653715 + L2 LINE L2 2855 3260 -12 500 307 44 18 chr6 133627240 133627514 -55652040 + L1ME LINE L1 5404 5684 -437 349 314 57 9 chr6 133627842 133627947 -55651607 - L2 LINE L2 0 3272 3163 2429 103 11 27 chr6 133628101 133628470 -55651084 - THE1B LTR MaLR -1 363 1 680 224 142 32 chr6 133628498 133628717 -55650837 - MIR SINE MIR -4 258 16 563 277 16 21 chr6 133629083 133629271 -55650283 - MLT1K LTR MaLR -23 565 379 2278 88 7 0 chr6 133629762 133630057 -55649497 - AluSx SINE Alu -15 297 1 1097 185 57 96 chr6 133631370 133631776 -55647778 - MLT1B LTR MaLR 0 390 1 539 285 132 44 chr6 133631996 133632224 -55647330 + MIR SINE MIR 15 262 0 756 265 45 0 chr6 133637838 133638038 -55641516 - MER63A DNA MER1_type -1 209 1 193 305 110 49 chr6 133638175 133638257 -55641297 - L2 LINE L2 -1 3271 3185 1199 296 87 15 chr6 133638575 133639366 -55640188 + L2 LINE L2 2456 3312 -1 339 233 0 12 chr6 133639843 133639929 -55639625 + Charlie5 DNA MER1_type 2540 2624 0 2025 134 7 26 chr6 133640000 133640305 -55639249 - AluSx SINE Alu -9 303 5 315 197 0 14 chr6 133640378 133640449 -55639105 - AluS SINE Alu -5 296 227 969 139 7 20 chr6 133640449 133640600 -55638954 - AluSq/x SINE Alu -164 149 1 1592 153 0 38 chr6 133641400 133641662 -55637892 + AluSx SINE Alu 41 292 -20 27 29 0 0 chr6 133642225 133642259 -55637295 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr6 133642593 133642614 -55636940 + AT_rich Low_complexity Low_complexity 1 21 0 2050 144 3 7 chr6 133642950 133643249 -55636305 - AluJb SINE Alu -14 298 1 2227 82 0 7 chr6 133643647 133643980 -55635574 - AluSc SINE Alu 0 331 1 225 0 0 0 chr6 133644029 133644054 -55635500 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 212 311 184 10 chr6 133644114 133644217 -55635337 - L2 LINE L2 0 3313 3193 388 290 217 22 chr6 133644318 133644590 -55634964 - L2 LINE L2 -338 2976 2652 331 308 111 34 chr6 133644770 133644887 -55634667 - L2 LINE L2 0 3272 3147 1503 184 9 22 chr6 133645374 133645449 -55634105 - MLT1A1 LTR MaLR -13 361 287 1585 185 21 17 chr6 133645449 133645736 -55633818 - AluJo SINE Alu -24 288 1 1503 184 9 22 chr6 133645736 133646032 -55633522 - MLT1A1 LTR MaLR -87 287 20 255 91 45 0 chr6 133646047 133646091 -55633463 + L2 LINE L2 2178 2223 -1091 326 295 164 63 chr6 133646091 133646321 -55633233 + L2 LINE L2 2474 2679 -635 2560 64 0 6 chr6 133646321 133646633 -55632921 + AluY SINE Alu 1 310 -1 326 295 164 63 chr6 133646633 133646860 -55632694 + L2 LINE L2 2679 2977 -337 2068 117 13 28 chr6 133646922 133647239 -55632315 + AluSx SINE Alu 1 312 0 30 59 0 0 chr6 133647323 133647374 -55632180 + AT_rich Low_complexity Low_complexity 1 51 0 1802 120 3 81 chr6 133647483 133647791 -55631763 - AluSx SINE Alu -18 294 11 2203 79 4 0 chr6 133648259 133648583 -55630971 + AluSc SINE Alu 1 325 0 32 57 0 0 chr6 133648954 133649007 -55630547 + AT_rich Low_complexity Low_complexity 1 53 0 2458 65 0 16 chr6 133649123 133649430 -55630124 + AluY SINE Alu 1 302 -9 841 194 47 0 chr6 133650974 133651144 -55628410 - MER58A DNA MER1_type 0 224 47 2549 44 0 0 chr6 133652006 133652302 -55627252 - AluY SINE Alu -15 296 1 21 36 0 0 chr6 133652358 133652386 -55627168 + AT_rich Low_complexity Low_complexity 1 28 0 561 162 0 45 chr6 133653315 133653426 -55626128 - FLAM_C SINE Alu -37 106 1 180 0 0 0 chr6 133653555 133653575 -55625979 + (A)n Simple_repeat Simple_repeat 1 20 0 4762 110 15 80 chr6 133656201 133657128 -55622426 + MER4D LTR ERV1 6 872 0 448 195 0 0 chr6 133657131 133657208 -55622346 + MER21B LTR ERV1 12 88 -775 3350 191 42 58 chr6 133657221 133658017 -55621537 + LTR39 LTR ERV1 1 783 0 2570 229 104 19 chr6 133658018 133658751 -55620803 + MER21B LTR ERV1 49 843 -20 22 0 0 0 chr6 133659436 133659458 -55620096 + AT_rich Low_complexity Low_complexity 1 22 0 762 228 6 36 chr6 133659492 133659659 -55619895 + MER58A DNA MER1_type 1 162 0 1536 223 11 19 chr6 133660942 133661315 -55618239 + MLT1A2 LTR MaLR 1 370 -4 286 257 35 26 chr6 133661512 133661625 -55617929 + L1ME LINE L1 5756 5869 -252 2188 139 7 0 chr6 133661721 133662030 -55617524 + AluSx SINE Alu 1 311 -1 644 186 23 17 chr6 133662203 133662436 -55617118 + GA-rich Low_complexity Low_complexity 1 234 0 29 70 0 0 chr6 133662779 133662836 -55616718 + AT_rich Low_complexity Low_complexity 1 57 0 2329 105 0 3 chr6 133663115 133663420 -55616134 + AluSg SINE Alu 1 304 -6 2261 110 3 0 chr6 133663447 133663746 -55615808 + AluSx SINE Alu 9 308 -4 207 0 0 0 chr6 133663746 133663769 -55615785 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 252 0 0 0 chr6 133663768 133663796 -55615758 + (GA)n Simple_repeat Simple_repeat 2 29 0 438 219 105 103 chr6 133663993 133664382 -55615172 - L1MC4 LINE L1 -124 7918 7529 4569 140 79 26 chr6 133664896 133665753 -55613801 + MER4D LTR ERV1 1 903 0 331 165 66 55 chr6 133666916 133667007 -55612547 + MER104 DNA Tc2 13 104 -76 756 163 7 30 chr6 133667051 133667186 -55612368 - FLAM_A SINE Alu -1 132 1 24 32 0 0 chr6 133667335 133667366 -55612188 + AT_rich Low_complexity Low_complexity 1 31 0 3254 127 33 23 chr6 133667995 133668623 -55610931 + MER41A LTR ERV1 1 635 0 3569 165 57 4 chr6 133668664 133669431 -55610123 + L1MC1 LINE L1 5195 6007 -337 1364 200 184 58 chr6 133669451 133670092 -55609462 + MER50 LTR ERV1 13 734 0 1767 185 34 6 chr6 133670094 133670450 -55609104 + MER50-int LTR ERV1 4 369 -6836 1549 186 80 35 chr6 133670439 133670926 -55608628 + MER50-int LTR ERV1 655 1243 -5962 * 1549 195 57 61 chr6 133670908 133671079 -55608475 + MER50-int LTR ERV1 1260 1430 -3787 6024 62 29 0 chr6 133671079 133671837 -55607717 + LTR17 LTR ERV1 1 780 0 1549 195 57 61 chr6 133671837 133672219 -55607335 + MER50-int LTR ERV1 1430 4781 -436 770 176 0 67 chr6 133672227 133672392 -55607162 + MER50 LTR ERV1 581 734 0 1590 146 30 67 chr6 133672393 133672721 -55606833 + L1MC1 LINE L1 6013 6328 -5 900 223 91 35 chr6 133672889 133673316 -55606238 + L1MCc LINE L1 18 468 -5955 270 182 0 0 chr6 133673526 133673581 -55605973 + L1 LINE L1 2936 2990 -3156 463 198 89 0 chr6 133673581 133673682 -55605872 + MER58A DNA MER1_type 37 146 0 685 223 39 9 chr6 133673687 133673920 -55605634 + L1 LINE L1 3021 3260 -2886 * 751 196 56 28 chr6 133673906 133674120 -55605434 + L1 LINE L1 4080 4299 -1847 1313 217 0 27 chr6 133674140 133674398 -55605156 + AluJo SINE Alu 47 297 -15 230 149 14 40 chr6 133675768 133675842 -55603712 - L1ME4a LINE L1 -8 6113 6042 1855 122 0 4 chr6 133676020 133676275 -55603279 - AluSx SINE Alu -15 297 44 3696 101 4 4 chr6 133676641 133677316 -55602238 + L1MA1 LINE L1 5110 5785 -517 6149 161 3 3 chr6 133677323 133678455 -55601099 + L1PA14 LINE L1 3289 4421 -1725 750 94 24 16 chr6 133678466 133678593 -55600961 + L1MA1 LINE L1 5902 6029 -273 5868 94 21 25 chr6 133678600 133678960 -55600594 + L1PA14 LINE L1 4439 4799 -1362 2223 95 0 0 chr6 133678960 133679276 -55600278 + AluSq SINE Alu 2 317 0 5868 94 21 25 chr6 133679276 133680318 -55599236 + L1PA14 LINE L1 4799 5828 -333 2759 10 3 0 chr6 133680318 133680621 -55598933 + AluYb8 SINE Alu 1 304 -14 5868 94 21 25 chr6 133680621 133680953 -55598601 + L1PA14 LINE L1 5828 6160 -1 3329 99 43 2 chr6 133680953 133681456 -55598098 + L1MA1 LINE L1 5769 6295 -7 430 83 111 0 chr6 133681387 133681459 -55598095 + L1MA1 LINE L1 6219 6298 -4 882 289 34 50 chr6 133682082 133682462 -55597092 + L2 LINE L2 2449 2822 -492 314 307 55 24 chr6 133682700 133682827 -55596727 - L2 LINE L2 -526 2788 2658 2121 161 52 3 chr6 133684071 133684419 -55595135 - MLT1A1 LTR MaLR 0 365 1 4567 140 28 17 chr6 133684662 133685443 -55594111 - L1MB7 LINE L1 0 6184 5395 221 232 87 14 chr6 133686115 133686184 -55593370 - L2 LINE L2 -938 2376 2303 739 70 211 0 chr6 133686778 133686892 -55592662 + MER85 DNA T2_type 1 138 -1 1395 204 16 29 chr6 133687250 133687558 -55591996 + AluJb SINE Alu 1 304 -8 524 163 22 11 chr6 133687673 133687765 -55591789 + HY4 scRNA scRNA 1 93 0 1070 221 90 85 chr6 133687855 133687969 -55591585 + MLT1G LTR MaLR 1 113 -477 2170 107 0 58 chr6 133687969 133688296 -55591258 - AluSx SINE Alu -4 308 1 1070 221 90 85 chr6 133688296 133688740 -55590814 + MLT1G LTR MaLR 113 533 -57 210 22 111 22 chr6 133688744 133688789 -55590765 + T-rich Low_complexity Low_complexity 2 50 0 1521 164 72 8 chr6 133688811 133689073 -55590481 - AluJb SINE Alu -33 279 1 2559 126 69 12 chr6 133690381 133690786 -55588768 + MSTA LTR MaLR 1 428 0 352 353 20 27 chr6 133690989 133691139 -55588415 - L2 LINE L2 -2808 506 358 1420 152 0 94 chr6 133691141 133691418 -55588136 - AluJo SINE Alu -8 304 54 535 115 25 0 chr6 133691558 133691709 -55587845 + L1MA5A LINE L1 5982 6296 -1 303 204 0 0 chr6 133691721 133691770 -55587784 + AluJ/monomer SINE Alu 1 49 -253 297 333 80 13 chr6 133691909 133692081 -55587473 + MIR SINE MIR 42 230 -32 1925 148 17 3 chr6 133692177 133692474 -55587080 + AluJb SINE Alu 3 303 -9 333 244 187 8 chr6 133693341 133693464 -55586090 + MIR SINE MIR 45 189 -73 221 327 137 40 chr6 133693610 133694114 -55585440 + L2 LINE L2 572 1124 -2190 1576 212 0 23 chr6 133694212 133694519 -55585035 + AluJo SINE Alu 1 300 -12 378 259 163 18 chr6 133694669 133694835 -55584719 + L2 LINE L2 2199 2388 -926 633 309 11 21 chr6 133694836 133695024 -55584530 + MLT1F1 LTR MaLR 1 186 -356 1085 232 49 8 chr6 133695070 133695316 -55584238 + MLT1F1 LTR MaLR 311 566 -1 201 302 21 42 chr6 133695564 133695660 -55583894 + L2 LINE L2 2555 2648 -666 927 173 124 19 chr6 133695961 133696314 -55583240 - MLT1D LTR MaLR -16 489 9 27 29 0 0 chr6 133696803 133696837 -55582717 + AT_rich Low_complexity Low_complexity 1 34 0 395 212 0 12 chr6 133697215 133697300 -55582254 - MER82 DNA MER2_type 0 653 570 1163 135 21 5 chr6 133697304 133697496 -55582058 - MER82 DNA MER2_type -376 277 83 860 209 0 6 chr6 133697611 133697796 -55581758 + FRAM SINE Alu 1 177 0 2434 80 3 7 chr6 133697841 133698142 -55581412 - AluSx SINE Alu -12 300 1 430 312 28 0 chr6 133698238 133698379 -55581175 - MIR SINE MIR -65 197 53 542 150 0 0 chr6 133698845 133698925 -55580629 - MADE1 DNA Mariner 0 80 1 21 36 0 0 chr6 133698943 133698971 -55580583 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr6 133699658 133699702 -55579852 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr6 133700403 133700424 -55579130 + AT_rich Low_complexity Low_complexity 1 21 0 2127 123 17 3 chr6 133701654 133701955 -55577599 - AluSx SINE Alu -7 305 1 240 333 53 0 chr6 133704655 133704730 -55574824 + L2 LINE L2 3169 3247 -25 585 235 67 7 chr6 133705200 133705349 -55574205 - MIR SINE MIR -87 175 18 846 180 15 65 chr6 133705847 133706047 -55573507 + MER20 DNA MER1_type 27 216 -3 300 231 93 157 chr6 133708262 133708726 -55570828 - L1M2 LINE L1 -5877 972 539 22 35 0 0 chr6 133710312 133710341 -55569213 + AT_rich Low_complexity Low_complexity 1 29 0 1462 158 9 0 chr6 133710359 133710587 -55568967 - MER46A DNA MER2_type 0 236 7 1789 150 67 6 chr6 133710603 133710916 -55568638 - MSTA LTR MaLR 0 428 97 649 147 60 87 chr6 133710914 133711097 -55568457 - THE1C LTR MaLR -104 271 94 3298 149 70 2 chr6 133711097 133711641 -55567913 - LTR1 LTR ERV1 0 785 205 1406 165 17 27 chr6 133711658 133711944 -55567610 - LTR1 LTR ERV1 -527 258 32 582 133 0 11 chr6 133712005 133712095 -55567459 - MSTA LTR MaLR -339 89 1 10976 123 13 31 chr6 133712095 133713702 -55565852 - THE1C-int LTR MaLR 0 1580 3 2098 119 56 63 chr6 133713704 133714082 -55565472 - THE1C LTR MaLR 0 375 1 8085 175 46 0 chr6 133714086 133715465 -55564089 - MSTA-int LTR MaLR -209 1442 1 2720 127 43 14 chr6 133715465 133715881 -55563673 - MSTA LTR MaLR 0 428 1 704 357 65 35 chr6 133716012 133716749 -55562805 - L2 LINE L2 -5 3267 2511 323 185 138 0 chr6 133716866 133716931 -55562623 + MER69 DNA AcHobo 2451 2524 -2 5078 155 34 27 chr6 133716995 133718068 -55561486 + L1MB3 LINE L1 5103 6183 0 187 179 26 0 chr6 133718409 133718448 -55561106 + MIR3 SINE MIR 146 185 -23 291 246 0 0 chr6 133718755 133718816 -55560738 + MIR3 SINE MIR 125 185 -23 28 29 0 0 chr6 133718832 133718867 -55560687 + AT_rich Low_complexity Low_complexity 1 35 0 921 183 122 30 chr6 133718896 133718953 -55560601 - AluJo SINE Alu -97 215 165 1561 133 56 26 chr6 133718953 133719257 -55560297 - AluSx SINE Alu 0 312 29 921 183 122 30 chr6 133719257 133719396 -55560158 - AluJo SINE Alu -147 165 1 490 320 117 40 chr6 133719917 133720242 -55559312 - LTR16C LTR ERVL -57 434 85 1252 361 32 64 chr6 133720469 133721919 -55557635 - HERV16 LTR ERVL -395 5369 3966 1718 183 4 0 chr6 133721951 133722230 -55557324 - AluJb SINE Alu -32 280 1 727 104 26 26 chr6 133722235 133722350 -55557204 - L1MA5 LINE L1 -2 6298 6184 673 305 52 35 chr6 133722359 133722842 -55556712 - HERV16 LTR ERVL -2998 1998 1521 328 281 199 0 chr6 133723082 133723228 -55556326 - HERV16 LTR ERVL -3873 1123 949 524 173 18 0 chr6 133723750 133723860 -55555694 + CT-rich Low_complexity Low_complexity 3 114 0 917 178 92 0 chr6 133723877 133724029 -55555525 - FRAM SINE Alu 0 166 1 299 373 101 0 chr6 133724269 133724427 -55555127 - HERV16 LTR ERVL -4820 176 3 689 303 77 39 chr6 133724428 133724765 -55554789 - LTR16C LTR ERVL 0 491 142 1749 183 16 3 chr6 133725344 133725650 -55553904 - AluJo SINE Alu 0 312 3 2926 13 0 0 chr6 133726148 133726465 -55553089 + AluYb8 SINE Alu 1 317 -1 433 189 0 14 chr6 133727230 133727304 -55552250 - LTR16C LTR ERVL 0 491 419 366 115 0 33 chr6 133727330 133727391 -55552163 + MER21A LTR ERV1 13 71 -860 713 127 4 206 chr6 133727490 133727720 -55551834 + MER39 LTR ERV1 72 341 -366 3481 154 18 12 chr6 133727720 133727806 -55551748 - LTR39 LTR ERV1 0 783 699 2389 115 45 25 chr6 133727806 133728163 -55551391 + THE1B LTR MaLR 1 364 0 3481 154 18 12 chr6 133728163 133728641 -55550913 - LTR39 LTR ERV1 -84 699 216 1858 111 4 4 chr6 133728654 133728936 -55550618 + AluSq SINE Alu 34 315 0 581 126 110 31 chr6 133728942 133729069 -55550485 + MER21A LTR ERV1 459 595 -336 * 1440 130 14 5 chr6 133729068 133729291 -55550263 - LTR39 LTR ERV1 -558 225 1 2730 182 60 74 chr6 133729292 133729940 -55549614 + MER21A LTR ERV1 210 848 -83 640 270 33 91 chr6 133729985 133730259 -55549295 - LTR16C LTR ERVL -68 423 166 2131 115 6 19 chr6 133730468 133730780 -55548774 + AluSx SINE Alu 1 308 -4 2322 82 0 20 chr6 133730859 133731165 -55548389 - AluSp SINE Alu -13 300 1 300 254 65 36 chr6 133731170 133731308 -55548246 - MIR SINE MIR -52 210 69 2369 107 0 0 chr6 133731567 133731876 -55547678 + AluSx SINE Alu 1 309 -3 2177 111 16 7 chr6 133732299 133732606 -55546948 + AluSx SINE Alu 1 310 -2 471 243 97 38 chr6 133732712 133732897 -55546657 + MLT1L LTR MaLR 15 210 -405 708 284 67 43 chr6 133732952 133733234 -55546320 + MLT1L LTR MaLR 327 615 0 2353 92 0 3 chr6 133733439 133733743 -55545811 + AluSc SINE Alu 1 303 -6 1657 143 110 0 chr6 133733827 133734100 -55545454 - AluJb SINE Alu -9 303 1 215 306 125 0 chr6 133734198 133734270 -55545284 + L2 LINE L2 3152 3232 -40 24 53 0 0 chr6 133734461 133734499 -55545055 + AT_rich Low_complexity Low_complexity 1 38 0 3042 167 116 15 chr6 133734499 133735038 -55544516 + L1MC3 LINE L1 7125 7731 -54 2319 120 125 10 chr6 133735038 133735422 -55544132 + MSTA LTR MaLR 1 428 0 3042 167 116 15 chr6 133735422 133735476 -55544078 + L1MC3 LINE L1 7731 7778 -7 2287 67 0 3 chr6 133735905 133736215 -55543339 + AluY SINE Alu 2 310 0 389 296 41 59 chr6 133736426 133736595 -55542959 + MIR SINE MIR 51 216 -46 2181 107 0 49 chr6 133737273 133737601 -55541953 + AluSx SINE Alu 1 312 0 338 270 57 8 chr6 133737807 133737917 -55541637 + MER5A DNA MER1_type 61 188 -1 221 0 35 0 chr6 133737922 133737951 -55541603 + (TG)n Simple_repeat Simple_repeat 2 31 0 227 146 83 0 chr6 133738092 133738140 -55541414 + L1PA15-16 LINE L1 500 551 -6298 225 83 0 0 chr6 133739260 133739296 -55540258 + (TC)n Simple_repeat Simple_repeat 1 36 0 238 220 78 147 chr6 133739857 133740075 -55539479 - MLT1L LTR MaLR -54 561 359 410 275 28 39 chr6 133740191 133740373 -55539181 - MLT1J LTR MaLR -331 180 1 2542 170 31 2 chr6 133740855 133741308 -55538246 + L1MB3 LINE L1 5682 6147 -36 2350 87 13 0 chr6 133741912 133742221 -55537333 - AluSp SINE Alu 0 313 1 249 191 21 0 chr6 133742879 133742926 -55536628 + LTR16B LTR ERVL 133 180 -284 285 276 143 81 chr6 133743019 133743317 -55536237 + L2 LINE L2 247 525 -2789 2059 112 52 42 chr6 133743317 133743412 -55536142 + MER44D DNA MER2_type 5 98 -2393 285 29 0 0 chr6 133743412 133743446 -55536108 + (GA)n Simple_repeat Simple_repeat 1 34 0 2059 112 52 42 chr6 133743446 133743470 -55536084 + MER44D DNA MER2_type 98 120 -2371 1874 117 11 8 chr6 133743470 133743754 -55535800 + AluSx SINE Alu 19 303 0 2059 112 52 42 chr6 133743754 133743962 -55535592 + MER44D DNA MER2_type 120 607 -2 285 276 143 81 chr6 133743962 133743985 -55535569 + L2 LINE L2 525 588 -2726 520 130 0 0 chr6 133744031 133744108 -55535446 + MER53 DNA DNA 3 79 -110 182 299 81 0 chr6 133744132 133744219 -55535335 + L2 LINE L2 663 756 -2558 1712 169 0 49 chr6 133744324 133744650 -55534904 - AluJb SINE Alu -1 311 2 899 124 0 0 chr6 133744664 133744785 -55534769 - FRAM SINE Alu -28 148 28 552 110 0 0 chr6 133744785 133744867 -55534687 - L1M LINE L1 -786 5394 5313 22 0 0 0 chr6 133745056 133745078 -55534476 + AT_rich Low_complexity Low_complexity 1 22 0 1377 147 41 176 chr6 133745130 133745203 -55534351 - LTR52 LTR ERVL -3 418 337 842 149 0 15 chr6 133745203 133745337 -55534217 + FLAM_C SINE Alu 1 132 -1 1377 147 41 176 chr6 133745337 133745474 -55534080 - LTR52 LTR ERVL -84 337 183 2161 100 0 21 chr6 133745474 133745764 -55533790 + AluSx SINE Alu 1 284 -28 420 20 0 0 chr6 133745764 133745813 -55533741 + (CA)n Simple_repeat Simple_repeat 2 50 0 1377 147 41 176 chr6 133745813 133746016 -55533538 - LTR52 LTR ERVL -237 184 74 1621 197 28 0 chr6 133746016 133746305 -55533249 + L1PA16 LINE L1 5861 6157 -9 1377 147 41 176 chr6 133746305 133746371 -55533183 - LTR52 LTR ERVL -347 74 1 353 269 131 0 chr6 133747427 133747557 -55531997 - MIR SINE MIR -66 196 50 498 234 125 27 chr6 133748009 133748193 -55531361 + MIR SINE MIR 61 262 0 8003 97 7 19 chr6 133748244 133749328 -55530226 + MER11C LTR ERVK 1 1071 0 1462 168 27 70 chr6 133749482 133749780 -55529774 + AluJb SINE Alu 1 285 -27 3889 176 35 14 chr6 133749787 133750510 -55529044 - L1MB7 LINE L1 -7 6177 5440 1258 196 151 15 chr6 133750594 133750903 -55528651 - AluJo SINE Alu 0 345 1 1958 152 0 17 chr6 133750928 133751230 -55528324 - AluJb SINE Alu -15 297 1 787 169 52 0 chr6 133751726 133751862 -55527692 - FLAM_C SINE Alu 0 143 1 3124 184 31 90 chr6 133752128 133752437 -55527117 - MER72 LTR ERV1 0 722 396 2000 154 0 10 chr6 133752437 133752748 -55526806 + AluJb SINE Alu 5 312 0 3124 184 31 90 chr6 133752748 133752896 -55526658 - MER72 LTR ERV1 -326 396 241 2050 128 0 25 chr6 133752896 133753215 -55526339 + AluSx SINE Alu 1 311 -1 3124 184 31 90 chr6 133753215 133753519 -55526035 - MER72 LTR ERV1 -481 241 5 23 33 0 0 chr6 133753866 133753896 -55525658 + AT_rich Low_complexity Low_complexity 1 30 0 28 48 0 0 chr6 133754268 133754310 -55525244 + AT_rich Low_complexity Low_complexity 1 42 0 1832 127 15 0 chr6 133755068 133755335 -55524219 - AluSg SINE Alu -10 300 30 2284 215 37 9 chr6 133755707 133756162 -55523392 - MLT1E3 LTR MaLR -2 622 155 2373 186 87 83 chr6 133756242 133757015 -55522539 - LTR1B LTR ERV1 -50 776 1 1015 131 6 19 chr6 133757016 133757176 -55522378 - MLT1E3 LTR MaLR -466 158 1 244 306 0 0 chr6 133757340 133757405 -55522149 + MIR SINE MIR 56 121 -87 288 70 0 0 chr6 133757607 133757650 -55521904 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 293 235 0 0 chr6 133757650 133757701 -55521853 - L2 LINE L2 -13 3259 3209 1687 85 4 37 chr6 133757714 133757960 -55521594 + MER4D LTR ERV1 1 238 -634 1222 279 65 25 chr6 133757960 133758486 -55521068 - LTR38 LTR ERV1 -9 547 1 * 3873 98 28 49 chr6 133758486 133759073 -55520481 + MER4D LTR ERV1 219 792 -80 389 100 110 120 chr6 133759557 133759657 -55519897 - L1MC1 LINE L1 -4 6329 6231 243 186 0 0 chr6 133759658 133759701 -55519853 + MER5A DNA MER1_type 99 141 -48 2193 119 3 6 chr6 133760640 133760952 -55518602 - AluSx SINE Alu -1 311 1 26 30 0 0 chr6 133761088 133761121 -55518433 + AT_rich Low_complexity Low_complexity 1 33 0 1572 176 33 20 chr6 133761275 133761576 -55517978 - AluJb SINE Alu -7 305 1 22 0 0 0 chr6 133763088 133763110 -55516444 + AT_rich Low_complexity Low_complexity 1 22 0 1576 251 56 8 chr6 133763129 133763507 -55516047 - LTR16A LTR ERVL 0 450 55 746 149 0 204 chr6 133763573 133763774 -55515780 - AluJo SINE Alu -151 161 2 481 244 90 16 chr6 133763782 133764129 -55515425 + L1ME3A LINE L1 5087 5450 -712 1676 175 0 7 chr6 133764203 133764477 -55515077 + AluJo SINE Alu 41 312 0 843 253 100 74 chr6 133764655 133765193 -55514361 + L1ME3A LINE L1 5503 6054 -116 29 28 0 0 chr6 133765640 133765676 -55513878 + AT_rich Low_complexity Low_complexity 1 36 0 2936 6 0 0 chr6 133765790 133766104 -55513450 + AluYb8 SINE Alu 1 314 -4 226 243 27 27 chr6 133766284 133766358 -55513196 - LTR67 LTR ERVL 0 557 484 244 268 0 49 chr6 133766668 133766750 -55512804 - MLT1K LTR MaLR -494 94 17 882 207 16 36 chr6 133766861 133767054 -55512500 - MLT1B LTR MaLR -6 384 196 264 100 0 0 chr6 133767054 133767094 -55512460 + (TG)n Simple_repeat Simple_repeat 1 40 0 214 104 21 21 chr6 133767100 133767148 -55512406 + (GA)n Simple_repeat Simple_repeat 2 49 0 426 170 38 19 chr6 133767153 133767259 -55512295 - MLT1A2 LTR MaLR -215 175 68 653 188 27 0 chr6 133767263 133767375 -55512179 - MLT1A2 LTR MaLR -259 115 1 294 273 61 20 chr6 133767729 133767828 -55511726 + MIR3 SINE MIR 3 105 -103 2051 189 50 38 chr6 133768081 133768387 -55511167 - MLT1D LTR MaLR -2 503 186 2195 84 7 3 chr6 133768387 133768719 -55510835 - AluSp SINE Alu 0 333 1 2051 189 50 38 chr6 133768719 133768886 -55510668 - MLT1D LTR MaLR -319 186 23 2092 102 29 0 chr6 133771269 133771570 -55507984 - AluSx SINE Alu 0 309 1 312 303 55 42 chr6 133772472 133772509 -55507045 - MIR SINE MIR -68 194 159 1937 208 25 36 chr6 133772509 133772980 -55506574 + MLT1C LTR MaLR 1 466 -1 312 303 55 42 chr6 133772980 133773107 -55506447 - MIR SINE MIR -103 159 28 1850 159 16 15 chr6 133773235 133773566 -55505988 + L1MB2 LINE L1 5624 6158 -13 834 169 42 0 chr6 133773566 133773732 -55505822 + L1MB2 LINE L1 5997 6169 -2 1850 159 16 15 chr6 133773732 133773745 -55505809 + L1MB2 LINE L1 6158 6169 -2 2415 54 0 24 chr6 133773854 133774151 -55505403 + AluY SINE Alu 16 305 -6 913 243 148 41 chr6 133774780 133775245 -55504309 + LTR33 LTR ERVL 1 515 -6 591 261 163 0 chr6 133775571 133775786 -55503768 - MIR SINE MIR -2 260 11 676 219 114 9 chr6 133775868 133776078 -55503476 - MER113 DNA MER1_type? -289 232 1 396 0 0 0 chr6 133776191 133776235 -55503319 + (TG)n Simple_repeat Simple_repeat 2 45 0 935 185 0 0 chr6 133776238 133776389 -55503165 - FRAM SINE Alu -26 150 1 3057 174 24 14 chr6 133777296 133777848 -55501706 + MER89 LTR ERV1 1 557 -2 284 282 70 21 chr6 133779318 133779460 -55500094 + MIR SINE MIR 56 204 -58 394 358 24 35 chr6 133779587 133779776 -55499778 + MIR SINE MIR 12 199 -63 2609 160 44 9 chr6 133779776 133780227 -55499327 + MLT1C LTR MaLR 1 467 0 394 358 24 35 chr6 133780227 133780291 -55499263 + MIR SINE MIR 199 262 0 2274 114 3 0 chr6 133780320 133780628 -55498926 - AluSc SINE Alu 0 309 1 182 143 32 111 chr6 133781257 133781320 -55498234 + L2 LINE L2 3254 3311 -2 1936 111 3 87 chr6 133781326 133781658 -55497896 + AluSq SINE Alu 1 304 -9 26 30 0 0 chr6 133782004 133782037 -55497517 + AT_rich Low_complexity Low_complexity 1 33 0 186 297 0 47 chr6 133782376 133782440 -55497114 + MIR SINE MIR 118 178 -84 2360 108 0 0 chr6 133782817 133783122 -55496432 - AluSq SINE Alu -8 305 1 265 302 69 26 chr6 133784007 133784123 -55495431 + L2 LINE L2 3111 3231 -41 247 184 0 0 chr6 133784208 133784257 -55495297 + L2 LINE L2 3265 3313 0 424 286 61 23 chr6 133784477 133784739 -55494815 - L1ME4a LINE L1 -207 5914 5643 2279 119 0 0 chr6 133785238 133785541 -55494013 - AluSx SINE Alu -9 303 1 290 183 169 0 chr6 133785633 133785704 -55493850 + AluJ/FLAM SINE Alu 1 83 -219 1369 62 0 0 chr6 133786122 133786298 -55493256 + L1PA5 LINE L1 5979 6154 0 194 277 142 27 chr6 133790258 133790406 -55489148 - MIR SINE MIR 0 262 98 864 308 25 70 chr6 133790413 133790939 -55488615 + L2 LINE L2 2808 3309 -4 2323 78 0 10 chr6 133791597 133791906 -55487648 - AluY SINE Alu -5 306 1 2225 141 0 0 chr6 133793077 133793389 -55486165 - AluSq SINE Alu -1 312 1 188 231 0 0 chr6 133794142 133794181 -55485373 - MIR SINE MIR -6 256 218 270 308 88 38 chr6 133795168 133795327 -55484227 - L2 LINE L2 -119 3153 2987 626 264 60 87 chr6 133796076 133796594 -55482960 + LTR33A LTR ERVL 4 507 -16 13270 98 17 24 chr6 133796645 133798732 -55480822 + L1PA8 LINE L1 3425 5474 -698 2083 129 0 7 chr6 133798732 133799055 -55480499 + AluSq SINE Alu 1 313 0 13270 98 17 24 chr6 133799055 133799750 -55479804 + L1PA8 LINE L1 5474 6172 0 252 0 0 0 chr6 133801058 133801086 -55478468 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 199 175 25 0 chr6 133801555 133801595 -55477959 - L2 LINE L2 -1 3271 3231 21 36 0 0 chr6 133801691 133801719 -55477835 + AT_rich Low_complexity Low_complexity 1 28 0 368 264 0 11 chr6 133801761 133801852 -55477702 + L2 LINE L2 3224 3313 0 246 258 161 11 chr6 133802981 133803074 -55476480 - MIR SINE MIR -38 224 118 345 294 42 25 chr6 133803215 133803334 -55476220 - MIR SINE MIR -56 152 32 207 0 0 0 chr6 133803893 133803916 -55475638 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 380 343 70 17 chr6 133804752 133804924 -55474630 - MER5A DNA MER1_type -2 187 7 1309 111 0 11 chr6 133805024 133805205 -55474349 - AluSg/x SINE Alu -15 297 119 254 274 41 0 chr6 133805287 133805360 -55474194 + MIR3 SINE MIR 119 194 -14 520 309 124 24 chr6 133806155 133806485 -55473069 - L2 LINE L2 -54 3259 2897 24 32 0 0 chr6 133807031 133807062 -55472492 + AT_rich Low_complexity Low_complexity 1 31 0 348 164 96 0 chr6 133808075 133808148 -55471406 + MER116 DNA Mariner 1 80 0 1908 153 3 3 chr6 133810313 133810607 -55468947 - AluJb SINE Alu -18 294 1 939 237 51 14 chr6 133810819 133811034 -55468520 + MER58A DNA MER1_type 1 223 -1 399 117 52 13 chr6 133811523 133811600 -55467954 - L1MA9 LINE L1 0 6312 6233 2353 140 45 1 chr6 133811666 133812321 -55467233 - L1M2 LINE L1 -650 5662 4980 30 0 0 0 chr6 133813787 133813817 -55465737 + AT_rich Low_complexity Low_complexity 1 30 0 581 345 62 33 chr6 133814658 133814682 -55464872 + L3 LINE CR1 444 466 -1111 1597 171 17 20 chr6 133814682 133814981 -55464573 - AluJo SINE Alu -14 298 1 581 345 62 33 chr6 133814981 133815292 -55464262 + L3 LINE CR1 466 789 -788 1926 86 0 26 chr6 133815370 133815637 -55463917 - AluY SINE Alu -12 299 40 189 0 0 0 chr6 133815638 133815659 -55463895 + (T)n Simple_repeat Simple_repeat 1 21 0 469 331 154 20 chr6 133815763 133816107 -55463447 + L3 LINE CR1 1161 1550 -27 588 272 136 27 chr6 133816108 133816409 -55463145 - LTR16C LTR ERVL 0 491 158 426 160 32 11 chr6 133816953 133817047 -55462507 + HsTC2 DNA Tc2 1801 1896 -2 1782 160 62 3 chr6 133818453 133818778 -55460776 + MER2 DNA MER2_type 1 344 0 205 293 28 38 chr6 133819038 133819144 -55460410 + MIR SINE MIR 94 198 -64 414 288 55 25 chr6 133820140 133820303 -55459251 + MIR SINE MIR 1 168 -94 22 56 0 0 chr6 133820444 133820480 -55459074 + AT_rich Low_complexity Low_complexity 1 36 0 181 250 21 0 chr6 133822898 133822946 -55456608 + MIR SINE MIR 105 153 -109 1696 173 0 0 chr6 133824145 133824417 -55455137 - AluJo SINE Alu -40 272 1 2342 86 3 3 chr6 133824624 133824925 -55454629 - AluSg SINE Alu -9 301 1 798 334 126 36 chr6 133824944 133825503 -55454051 + L2 LINE L2 2658 3267 -5 22 70 0 0 chr6 133825610 133825653 -55453901 + AT_rich Low_complexity Low_complexity 1 43 0 1935 142 24 0 chr6 133826820 133827116 -55452438 + AluSx SINE Alu 1 303 -9 180 279 152 25 chr6 133827178 133827257 -55452297 - L2 LINE L2 -25 3288 3200 2141 107 3 7 chr6 133827901 133828201 -55451353 + AluSx SINE Alu 1 299 -13 4410 207 68 31 chr6 133828233 133829423 -55450131 - Charlie1a DNA MER1_type -1308 1453 208 1514 173 12 77 chr6 133829423 133829747 -55449807 + AluJo SINE Alu 6 308 -4 4410 207 68 31 chr6 133829747 133829882 -55449672 - Charlie1a DNA MER1_type -2553 208 79 393 232 12 0 chr6 133830034 133830116 -55449438 - Charlie1a DNA MER1_type -1360 95 13 1488 290 208 4 chr6 133831321 133831436 -55448118 - L2 LINE L2 -32 3281 3191 4672 158 115 38 chr6 133831436 133832578 -55446976 - Tigger3b DNA MER2_type -1 1230 1 1488 290 208 4 chr6 133832578 133832625 -55446929 - L2 LINE L2 -122 3191 3155 883 185 84 127 chr6 133832625 133833004 -55446550 + MLT1A1 LTR MaLR 1 363 -2 1488 290 208 4 chr6 133833004 133834134 -55445420 - L2 LINE L2 -158 3155 1710 375 315 99 74 chr6 133835600 133836035 -55443519 - L2 LINE L2 -17 3255 2810 243 295 0 0 chr6 133837418 133837479 -55442075 + MIR3 SINE MIR 142 202 -6 36 53 0 0 chr6 133837768 133837825 -55441729 + AT_rich Low_complexity Low_complexity 1 57 0 1892 155 14 0 chr6 133838607 133838903 -55440651 + AluJb SINE Alu 2 301 -11 2349 85 3 0 chr6 133841638 133841933 -55437621 - AluY SINE Alu -15 296 1 211 290 0 0 chr6 133843192 133843261 -55436293 + A-rich Low_complexity Low_complexity 1 69 0 2214 96 0 3 chr6 133843766 133844057 -55435497 - AluSg SINE Alu -20 290 1 1703 164 51 3 chr6 133844306 133844599 -55434955 - AluJb SINE Alu -5 307 1 1999 29 0 0 chr6 133844768 133845006 -55434548 + L1PA4 LINE L1 5918 6155 0 774 335 79 27 chr6 133845762 133846357 -55433197 - L2 LINE L2 -340 2974 2349 579 269 206 23 chr6 133846695 133847044 -55432510 - L1MC/D LINE L1 -1995 5813 5401 1950 115 52 3 chr6 133847070 133847358 -55432196 - AluSc SINE Alu -6 303 2 225 227 27 40 chr6 133847746 133847821 -55431733 - L1MC/D LINE L1 -1991 5817 5744 355 305 94 20 chr6 133847898 133848101 -55431453 - L1MC/D LINE L1 -864 5282 5065 3284 155 21 28 chr6 133848305 133848910 -55430644 + MER6A DNA MER2_type 5 605 0 363 259 37 44 chr6 133849168 133849303 -55430251 + MIR SINE MIR 83 216 -46 22 0 0 0 chr6 133850150 133850172 -55429382 + AT_rich Low_complexity Low_complexity 1 22 0 362 267 101 57 chr6 133850354 133850547 -55429007 - MIR SINE MIR -49 213 8 1910 131 69 3 chr6 133851256 133851546 -55428008 - AluSx SINE Alu -3 309 1 231 194 37 111 chr6 133851567 133851675 -55427879 - L1MC5 LINE L1 -31 7930 7831 299 219 89 77 chr6 133851752 133851921 -55427633 - L1MC5 LINE L1 -182 7779 7609 2104 140 0 16 chr6 133852104 133852418 -55427136 - AluJo SINE Alu -1 311 3 666 103 0 0 chr6 133852734 133852831 -55426723 + L1MB8 LINE L1 6066 6162 -16 428 310 77 45 chr6 133853229 133853539 -55426015 + L1ME4a LINE L1 5537 5856 -265 397 241 29 82 chr6 133853565 133853735 -55425819 + L1ME LINE L1 567 727 -5907 303 336 0 21 chr6 133853820 133853963 -55425591 + L1ME LINE L1 853 992 -5642 864 249 48 48 chr6 133854156 133854640 -55424914 + L1ME LINE L1 875 1431 -5215 2228 87 0 55 chr6 133854640 133854950 -55424604 + AluSg SINE Alu 1 293 -17 864 249 48 48 chr6 133854950 133855028 -55424526 + L1ME LINE L1 1431 1508 -5138 774 203 58 0 chr6 133855049 133855187 -55424367 + FRAM SINE Alu 1 146 -30 192 125 0 0 chr6 133855189 133855221 -55424333 + (GA)n Simple_repeat Simple_repeat 2 33 0 877 266 46 73 chr6 133855225 133855791 -55423763 + L1ME LINE L1 1535 2253 -4572 655 237 73 109 chr6 133856053 133856382 -55423172 - LTR40a LTR ERVL -133 386 70 1566 228 50 50 chr6 133856388 133856465 -55423089 + L1ME2 LINE L1 5617 5693 -471 1986 130 3 10 chr6 133856465 133856764 -55422790 - AluSx SINE Alu -15 297 1 1566 228 50 50 chr6 133856764 133857222 -55422332 + L1ME2 LINE L1 5692 6152 -12 1454 217 35 0 chr6 133857276 133857562 -55421992 - AluJb SINE Alu -16 296 1 361 225 81 50 chr6 133859069 133859229 -55420325 - MER103 DNA DNA -1 165 1 273 296 136 32 chr6 133860420 133860545 -55419009 + L2 LINE L2 3134 3271 -1 1788 125 45 33 chr6 133860999 133861336 -55418218 + THE1C LTR MaLR 35 375 0 2486 68 3 3 chr6 133861885 133862192 -55417362 + AluY SINE Alu 1 307 -4 351 0 0 0 chr6 133862473 133862512 -55417042 + (TG)n Simple_repeat Simple_repeat 2 40 0 306 293 160 4 chr6 133863412 133863637 -55415917 + Charlie7 DNA MER1_type 58 317 -2295 1379 200 157 44 chr6 133863640 133864161 -55415393 + Charlie7 DNA MER1_type 1429 2008 -604 1793 169 3 7 chr6 133864212 133864508 -55415046 - AluJo SINE Alu -17 295 1 23 33 0 0 chr6 133864520 133864550 -55415004 + AT_rich Low_complexity Low_complexity 1 30 0 11948 120 58 25 chr6 133864554 133865649 -55413905 + Tigger1 DNA MER2_type 1 1058 -1360 2143 124 13 3 chr6 133865649 133865948 -55413606 + AluSx SINE Alu 1 302 -10 11948 120 58 25 chr6 133865948 133866219 -55413335 + Tigger1 DNA MER2_type 1058 1318 -1100 1872 149 10 10 chr6 133866219 133866521 -55413033 + AluSx SINE Alu 1 302 -10 11948 120 58 25 chr6 133866521 133867157 -55412397 + Tigger1 DNA MER2_type 1318 2071 -347 216 0 0 0 chr6 133867340 133867364 -55412190 + (TCTCCC)n Simple_repeat Simple_repeat 3 26 0 2188 59 44 0 chr6 133868677 133868971 -55410583 - AluY SINE Alu 0 306 1 21 36 0 0 chr6 133870126 133870154 -55409400 + AT_rich Low_complexity Low_complexity 1 28 0 586 250 10 65 chr6 133871204 133871404 -55408150 + MER5A DNA MER1_type 1 189 0 400 267 72 83 chr6 133871568 133871692 -55407862 + MER5B DNA MER1_type 1 124 -54 645 69 0 0 chr6 133871692 133871779 -55407775 + (TG)n Simple_repeat Simple_repeat 2 88 0 400 267 72 83 chr6 133871779 133871834 -55407720 + MER5B DNA MER1_type 124 178 0 23 0 0 0 chr6 133872134 133872157 -55407397 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 133873486 133873508 -55406046 + AT_rich Low_complexity Low_complexity 1 22 0 197 328 17 0 chr6 133874601 133874659 -55404895 + L2 LINE L2 3137 3195 -77 587 263 33 7 chr6 133877061 133877213 -55402341 + MIR SINE MIR 41 196 -66 511 217 57 74 chr6 133878349 133878524 -55401030 - MER5B DNA MER1_type -6 172 1 192 278 56 0 chr6 133878533 133878587 -55400967 + MIR SINE MIR 20 76 -132 33 0 0 0 chr6 133879597 133879630 -55399924 + AT_rich Low_complexity Low_complexity 1 33 0 641 281 67 22 chr6 133880118 133880342 -55399212 + MIR SINE MIR 28 261 -1 276 30 0 0 chr6 133880442 133880475 -55399079 + (TG)n Simple_repeat Simple_repeat 2 34 0 229 355 16 8 chr6 133880566 133880687 -55398867 + L2 LINE L2 2238 2359 -955 656 288 110 4 chr6 133881635 133881957 -55397597 + L2 LINE L2 2904 3272 0 8907 101 17 11 chr6 133881978 133882305 -55397249 + HSMAR1 DNA Mariner 1 324 -963 2161 114 0 3 chr6 133882305 133882603 -55396951 + AluSc SINE Alu 1 297 -12 8907 101 17 11 chr6 133882603 133883554 -55396000 + HSMAR1 DNA Mariner 324 1287 0 22 35 0 0 chr6 133883692 133883721 -55395833 + AT_rich Low_complexity Low_complexity 1 29 0 264 328 42 17 chr6 133884069 133884188 -55395366 + MIR3 SINE MIR 46 167 -41 382 226 12 0 chr6 133885367 133885451 -55394103 - MIR3 SINE MIR -15 193 109 21 0 0 0 chr6 133885654 133885675 -55393879 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 133885708 133885735 -55393819 + AT_rich Low_complexity Low_complexity 1 27 0 389 329 59 29 chr6 133886424 133886594 -55392960 + MIR3 SINE MIR 10 184 -24 191 323 71 50 chr6 133886613 133886712 -55392842 - L2 LINE L2 -16 3297 3197 2066 135 33 0 chr6 133888085 133888418 -55391136 - MER2 DNA MER2_type 0 344 1 24 53 0 0 chr6 133888511 133888549 -55391005 + AT_rich Low_complexity Low_complexity 1 38 0 262 221 96 61 chr6 133888627 133888781 -55390773 + MIR SINE MIR 28 191 -71 336 364 73 6 chr6 133889347 133889512 -55390042 + Tigger8 DNA MER2_type 27 202 -464 303 213 50 12 chr6 133889518 133889598 -55389956 + MIR SINE MIR 82 164 -98 768 198 155 5 chr6 133889876 133890063 -55389491 - MER58C DNA MER1_type 0 215 1 465 275 47 52 chr6 133890063 133890296 -55389258 - L1ME4a LINE L1 -267 5854 5623 279 208 0 0 chr6 133890336 133890389 -55389165 - MER58 DNA MER1_type -95 246 194 2512 64 0 3 chr6 133890760 133891072 -55388482 - AluY SINE Alu 0 311 1 322 222 33 56 chr6 133891186 133891276 -55388278 - L2 LINE L2 0 3313 3226 2292 107 30 35 chr6 133892233 133892606 -55386948 + L1PA15 LINE L1 5464 5834 -331 2591 97 22 6 chr6 133892606 133892968 -55386586 + MLT2A1 LTR ERVL 1 368 -76 38 75 0 0 chr6 133892986 133893066 -55386488 + AT_rich Low_complexity Low_complexity 1 80 0 242 138 0 52 chr6 133893075 133893133 -55386421 + MLT2A1 LTR ERVL 399 453 0 2225 119 3 12 chr6 133893133 133893468 -55386086 + L1PA15 LINE L1 5830 6161 -4 830 222 27 5 chr6 133893898 133894083 -55385471 + MER5A DNA MER1_type 1 189 0 1910 161 7 10 chr6 133894887 133895192 -55384362 - AluJo SINE Alu -8 304 1 39 38 0 0 chr6 133895291 133895344 -55384210 + AT_rich Low_complexity Low_complexity 1 53 0 4517 200 53 21 chr6 133895465 133897091 -55382463 + L1MC/D LINE L1 4027 5708 -625 23 68 0 0 chr6 133897281 133897325 -55382229 + AT_rich Low_complexity Low_complexity 1 44 0 335 172 40 99 chr6 133897391 133897539 -55382015 - L1ME3A LINE L1 -85 6077 5944 1173 218 112 52 chr6 133897596 133898078 -55381476 - L1MC5 LINE L1 -435 7526 7016 1835 171 20 0 chr6 133898382 133898674 -55380880 - AluJb SINE Alu -14 298 1 937 195 82 114 chr6 133899530 133899622 -55379932 - L1MC5 LINE L1 -861 6947 6854 727 183 0 15 chr6 133899622 133899753 -55379801 - FLAM_A SINE Alu -4 129 1 937 195 82 114 chr6 133899753 133900171 -55379383 - L1MC5 LINE L1 -954 6854 6536 1027 158 73 28 chr6 133900173 133900404 -55379150 - L1MB8 LINE L1 -27 6151 5898 346 300 14 7 chr6 133900402 133900542 -55379012 - HAL1b LINE L1 -710 638 498 * 2245 100 0 13 chr6 133901298 133901597 -55377957 - AluSx SINE Alu -17 295 1 216 227 107 27 chr6 133902659 133902734 -55376820 + MIR SINE MIR 100 180 -82 536 313 58 35 chr6 133903208 133903607 -55375947 - L1ME3A LINE L1 -267 5854 5447 2205 86 0 67 chr6 133904910 133905088 -55374466 - AluSx SINE Alu -18 294 144 2895 3 0 0 chr6 133905088 133905399 -55374155 - AluYa5 SINE Alu 0 311 1 2205 86 0 67 chr6 133905399 133905534 -55374020 - AluSx SINE Alu -168 144 2 653 325 118 21 chr6 133905905 133906237 -55373317 + L2 LINE L2 2950 3313 0 21 0 0 0 chr6 133906855 133906876 -55372678 + AT_rich Low_complexity Low_complexity 1 21 0 1370 166 15 119 chr6 133907333 133907468 -55372086 + AluJo SINE Alu 1 148 -154 2298 69 0 3 chr6 133907468 133907759 -55371795 + AluY SINE Alu 21 310 -1 1370 166 15 119 chr6 133907759 133907960 -55371594 + AluJo SINE Alu 148 302 0 2595 122 24 12 chr6 133908414 133908825 -55370729 + MSTB LTR MaLR 11 426 0 526 348 130 30 chr6 133908849 133909602 -55369952 + L2 LINE L2 769 1596 -1718 710 333 124 13 chr6 133909608 133910061 -55369493 + L2 LINE L2 1805 2307 -1007 651 184 77 54 chr6 133910062 133910230 -55369324 + MIR SINE MIR 35 206 -56 337 248 40 79 chr6 133910232 133910333 -55369221 + L2 LINE L2 3175 3271 -1 794 243 18 60 chr6 133911187 133911405 -55368149 + MLT1I LTR MaLR 81 289 -120 1980 99 0 41 chr6 133911568 133911893 -55367661 + AluSg SINE Alu 1 313 0 188 208 19 57 chr6 133913148 133913201 -55366353 - MIR SINE MIR -3 259 209 417 258 25 17 chr6 133913883 133914003 -55365551 + L2 LINE L2 3189 3309 -4 1252 165 27 9 chr6 133914691 133914915 -55364639 - MSTB LTR MaLR 0 426 199 702 171 0 43 chr6 133914931 133915071 -55364483 - FLAM_C SINE Alu -9 134 1 1209 149 5 10 chr6 133915071 133915265 -55364289 - MSTB LTR MaLR -232 194 2 285 193 35 0 chr6 133917420 133917477 -55362077 + MER103 DNA DNA 96 154 -12 26 64 0 0 chr6 133918609 133918656 -55360898 + AT_rich Low_complexity Low_complexity 1 47 0 215 186 0 17 chr6 133918859 133918918 -55360636 + (TA)n Simple_repeat Simple_repeat 1 58 0 335 165 0 47 chr6 133920721 133920806 -55358748 + L1MA5A LINE L1 6216 6296 -1 2183 103 53 39 chr6 133920829 133921188 -55358366 + THE1B LTR MaLR 1 364 0 814 278 39 4 chr6 133921630 133921864 -55357690 - MIR SINE MIR 0 262 21 495 266 39 8 chr6 133922195 133922323 -55357231 - L2 LINE L2 -5 3308 3177 462 351 97 25 chr6 133922857 133923259 -55356295 - L3 LINE CR1 -788 789 359 413 65 0 0 chr6 133927524 133927586 -55351968 - Alu SINE Alu -3 309 248 718 154 0 83 chr6 133927587 133927743 -55351811 - FLAM_C SINE Alu 0 143 1 2217 116 0 0 chr6 133928388 133928689 -55350865 - AluY SINE Alu -10 301 1 32 26 0 0 chr6 133929365 133929404 -55350150 + AT_rich Low_complexity Low_complexity 1 39 0 2365 95 0 0 chr6 133930039 133930345 -55349209 - AluSg SINE Alu -2 308 3 326 306 41 0 chr6 133930461 133930559 -55348995 + MIR3 SINE MIR 76 177 -31 885 281 174 25 chr6 133930678 133931230 -55348324 + Charlie7 DNA MER1_type 57 690 -1922 310 331 98 16 chr6 133931349 133931533 -55348021 + MIR SINE MIR 1 199 -63 2261 106 0 3 chr6 133932180 133932473 -55347081 - AluSc SINE Alu -17 292 1 1739 168 3 7 chr6 133932816 133933101 -55346453 - AluJo SINE Alu -16 296 13 1960 191 77 58 chr6 133933193 133933780 -55345774 + LTR38B LTR ERV1 1 598 -12 612 243 219 6 chr6 133935662 133935867 -55343687 + MIR SINE MIR 4 251 -11 189 304 30 82 chr6 133936045 133936180 -55343374 + MIR SINE MIR 79 206 -56 411 274 80 0 chr6 133936378 133936491 -55343063 + MER5B DNA MER1_type 30 151 -27 495 299 41 53 chr6 133937817 133938061 -55341493 - MIR SINE MIR -7 255 15 199 372 116 20 chr6 133938210 133938409 -55341145 + MIR SINE MIR 26 243 -19 25 51 0 0 chr6 133938411 133938450 -55341104 + AT_rich Low_complexity Low_complexity 1 39 0 196 250 47 47 chr6 133939189 133939253 -55340301 + MIR SINE MIR 70 133 -75 638 294 65 0 chr6 133940801 133941002 -55338552 + MIR SINE MIR 48 261 -1 1970 171 79 44 chr6 133941328 133941848 -55337706 - LTR55 LTR ERV -10 538 1 701 180 33 13 chr6 133942549 133942699 -55336855 + L1MC1 LINE L1 6181 6333 0 398 177 0 10 chr6 133943428 133943524 -55336030 + MER53 DNA DNA 95 189 0 22 0 0 0 chr6 133943724 133943746 -55335808 + AT_rich Low_complexity Low_complexity 1 22 0 322 271 93 9 chr6 133944225 133944332 -55335222 - MIR SINE MIR -40 222 107 2273 83 41 0 chr6 133945969 133946259 -55333295 - AluSq SINE Alu -11 302 1 34 42 0 0 chr6 133946712 133946760 -55332794 + AT_rich Low_complexity Low_complexity 1 48 0 2860 157 46 52 chr6 133946869 133947500 -55332054 - L1MC1 LINE L1 -5 6328 5702 352 303 136 40 chr6 133948007 133948205 -55331349 - MIR SINE MIR -6 256 40 303 71 0 0 chr6 133949144 133949186 -55330368 + (TAA)n Simple_repeat Simple_repeat 2 43 0 2130 108 3 7 chr6 133949770 133950065 -55329489 - AluSg SINE Alu -16 294 1 2107 133 3 3 chr6 133951411 133951711 -55327843 - AluSx SINE Alu -12 300 1 2306 151 45 19 chr6 133953866 133954289 -55325265 + Tigger2a DNA MER2_type 1 434 0 649 243 41 46 chr6 133954608 133954826 -55324728 - MER20 DNA MER1_type -2 217 1 786 252 63 43 chr6 133954849 133955103 -55324451 - MIR SINE MIR 0 262 4 2024 124 18 0 chr6 133955169 133955444 -55324110 + AluSx SINE Alu 1 280 -32 2860 111 201 25 chr6 133955813 133956335 -55323219 - LTR18B LTR ERVL 0 614 1 1725 113 143 33 chr6 133956339 133956675 -55322879 - THE1C LTR MaLR -2 373 1 855 201 30 70 chr6 133956769 133957068 -55322486 + MLT1E2 LTR MaLR 2 288 -338 480 206 21 0 chr6 133957074 133957171 -55322383 + U6 snRNA snRNA 1 99 -8 1730 98 0 0 chr6 133957172 133957397 -55322157 - AluSg/x SINE Alu -1 311 87 1069 139 35 0 chr6 133957407 133957614 -55321940 + L1MA8 LINE L1 6056 6270 -21 1473 196 65 6 chr6 133957639 133957961 -55321593 + MLT1E2 LTR MaLR 279 619 -7 227 351 85 0 chr6 133958157 133958251 -55321303 - MIR SINE MIR -98 164 63 1039 322 141 26 chr6 133959510 133960361 -55319193 + L2 LINE L2 1710 2658 -656 392 314 72 58 chr6 133960456 133960819 -55318735 + L2 LINE L2 2866 3233 -39 29 0 0 0 chr6 133960876 133960905 -55318649 + AT_rich Low_complexity Low_complexity 1 29 0 272 91 23 0 chr6 133961349 133961393 -55318161 + (TA)n Simple_repeat Simple_repeat 2 46 0 474 286 62 87 chr6 133961678 133961939 -55317615 + MIR SINE MIR 1 250 -12 1810 86 116 11 chr6 133962328 133962596 -55316958 + AluSg1 SINE Alu 1 296 -13 23 0 0 0 chr6 133962607 133962630 -55316924 + AT_rich Low_complexity Low_complexity 1 23 0 387 293 32 0 chr6 133965095 133965218 -55314336 - MIR SINE MIR -30 232 106 874 197 22 17 chr6 133965739 133965859 -55313695 + MER5A DNA MER1_type 2 125 -64 2295 100 7 0 chr6 133965859 133966160 -55313394 - AluSx SINE Alu -8 304 2 874 197 22 17 chr6 133966160 133966217 -55313337 + MER5A DNA MER1_type 125 180 -9 346 309 77 46 chr6 133966780 133967107 -55312447 + MARNA DNA Mariner 44 380 -206 313 297 40 40 chr6 133967220 133967368 -55312186 - L2 LINE L2 -4 3268 3121 346 292 35 12 chr6 133969092 133969263 -55310291 + L1ME4a LINE L1 5661 5835 -286 2107 144 0 0 chr6 133969608 133969906 -55309648 + AluSx SINE Alu 7 304 -8 184 175 111 63 chr6 133971290 133971353 -55308201 + MIR3 SINE MIR 89 154 -54 674 182 0 0 chr6 133971632 133971742 -55307812 + FLAM_C SINE Alu 6 115 -28 22 0 0 0 chr6 133971750 133971772 -55307782 + AT_rich Low_complexity Low_complexity 1 22 0 898 265 55 0 chr6 133972180 133972418 -55307136 - MIR SINE MIR 0 262 12 263 347 157 0 chr6 133973134 133973255 -55306299 + MIR3 SINE MIR 61 200 -8 2250 104 10 0 chr6 133975620 133975919 -55303635 + AluSx SINE Alu 1 302 -10 426 304 137 60 chr6 133978433 133979012 -55300542 + L1M2 LINE L1 476 1049 -5800 466 261 145 85 chr6 133979291 133979865 -55299689 - L1M2 LINE L1 -5600 1249 642 21 0 0 0 chr6 133981172 133981193 -55298361 + AT_rich Low_complexity Low_complexity 1 21 0 32 43 0 0 chr6 133982507 133982553 -55297001 + AT_rich Low_complexity Low_complexity 1 46 0 199 211 35 18 chr6 133983727 133983784 -55295770 + MIR SINE MIR 82 139 -69 1879 189 48 19 chr6 133984156 133984632 -55294922 - L1MA7 LINE L1 -5 6286 5797 24 0 0 0 chr6 133984911 133984935 -55294619 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr6 133985802 133985828 -55293726 + AT_rich Low_complexity Low_complexity 1 26 0 3495 149 22 5 chr6 133986094 133986719 -55292835 + L1MB8 LINE L1 5538 6173 -5 2182 122 0 3 chr6 133987140 133987443 -55292111 - AluSq SINE Alu -11 302 1 1371 197 44 0 chr6 133987689 133987963 -55291591 + AluJo SINE Alu 5 290 -22 2122 83 8 0 chr6 133988037 133988341 -55291213 + AluSq SINE Alu 1 285 -28 201 239 0 0 chr6 133988379 133988425 -55291129 + CT-rich Low_complexity Low_complexity 1 46 0 222 198 33 33 chr6 133989210 133989301 -55290253 + (TA)n Simple_repeat Simple_repeat 1 91 0 234 0 0 0 chr6 133990038 133990064 -55289490 + (TG)n Simple_repeat Simple_repeat 2 27 0 283 361 92 32 chr6 133990147 133990485 -55289069 + L2 LINE L2 994 1351 -1963 846 201 10 43 chr6 133990522 133990731 -55288823 + MER20 DNA MER1_type 17 218 -1 1357 348 78 10 chr6 133990881 133991694 -55287860 + L2 LINE L2 1522 2389 -925 1953 114 51 43 chr6 133993558 133993909 -55285645 - MER46B DNA MER2_type -7 229 1 344 200 0 0 chr6 133993861 133993931 -55285623 + MER46A DNA MER2_type 97 166 -70 * 408 285 185 36 chr6 133994485 133994934 -55284620 + L2 LINE L2 2365 2880 -434 834 231 5 5 chr6 133994975 133995161 -55284393 - MLT1A2 LTR MaLR 0 374 189 393 156 0 0 chr6 133995184 133995261 -55284293 + GA-rich Low_complexity Low_complexity 2 78 0 557 150 72 72 chr6 133995262 133995368 -55284186 - MLT1A2 LTR MaLR -223 167 59 2490 94 46 14 chr6 133995368 133995719 -55283835 - THE1B LTR MaLR 0 364 3 557 150 72 72 chr6 133995719 133995779 -55283775 - MLT1A2 LTR MaLR -330 60 1 3185 102 10 4 chr6 133996918 133997397 -55282157 + L1PA13 LINE L1 5680 6161 -2 4351 128 7 7 chr6 133997402 133997960 -55281594 + L1PA16 LINE L1 5484 6044 -122 2370 97 12 134 chr6 133997960 133998444 -55281110 + MER61B LTR ERV1 1 425 0 4351 128 7 7 chr6 133998444 133998559 -55280995 + L1PA16 LINE L1 6043 6157 -9 197 83 28 0 chr6 133998589 133998625 -55280929 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 3679 123 72 37 chr6 133998909 133999577 -55279977 - LTR8 LTR ERV1 0 691 1 263 341 26 15 chr6 133999829 133999972 -55279582 + MER5A DNA MER1_type 1 154 -35 662 170 0 57 chr6 133999973 134000114 -55279440 - MER5A DNA MER1_type 0 189 57 180 224 241 0 chr6 134000141 134000199 -55279355 - MER5A DNA MER1_type -1 188 117 4559 158 22 48 chr6 134000351 134001456 -55278098 + L1MA9 LINE L1 5189 6281 -31 321 325 26 70 chr6 134001511 134001739 -55277815 - MIR SINE MIR -42 220 3 22 0 0 0 chr6 134002679 134002701 -55276853 + AT_rich Low_complexity Low_complexity 1 22 0 1123 223 136 57 chr6 134002979 134003397 -55276157 - MER92B LTR ERV1 0 636 186 21331 50 0 0 chr6 134003398 134006203 -55273351 - L1PA4 LINE L1 -1145 5001 2197 7246 42 0 6 chr6 134006203 134007355 -55272199 + L1PA4 LINE L1 5002 6149 -6 319 240 164 0 chr6 134007634 134007738 -55271816 + L2 LINE L2 3192 3312 -1 303 253 0 63 chr6 134007822 134007917 -55271637 + L1MC4 LINE L1 6615 6703 -1339 1286 165 38 4 chr6 134007938 134008174 -55271380 - AluJb SINE Alu -38 274 31 678 312 153 24 chr6 134009461 134009950 -55269604 - L2 LINE L2 -21 3292 2734 5132 99 42 13 chr6 134009966 134010031 -55269523 - L1MA3 LINE L1 0 7724 7662 1722 163 79 22 chr6 134010031 134010386 -55269168 - THE1C LTR MaLR 0 375 1 5132 99 42 13 chr6 134010386 134011162 -55268392 - L1MA3 LINE L1 -62 7662 6859 635 139 30 0 chr6 134011163 134011264 -55268290 - AluSg/x SINE Alu -81 231 128 2156 140 3 0 chr6 134011265 134011572 -55267982 - AluSx SINE Alu -4 308 1 1599 150 4 0 chr6 134011572 134011954 -55267600 - L1MA3 LINE L1 -743 6822 6473 1620 224 116 7 chr6 134011954 134012413 -55267141 + LTR22 LTR ERVK 1 509 0 9920 157 16 6 chr6 134012413 134014346 -55265208 - L1MA3 LINE L1 -1087 6478 4526 3223 182 47 3 chr6 134014347 134014963 -55264591 - L1MA3 LINE L1 -6911 654 12 678 238 30 13 chr6 134015010 134015241 -55264313 + L1MEc LINE L1 1713 1947 -4449 1105 198 45 57 chr6 134015342 134015446 -55264108 + L1MEc LINE L1 1948 2052 -4344 1584 195 13 50 chr6 134015446 134015744 -55263810 + AluJb SINE Alu 1 287 -25 1105 198 45 57 chr6 134015744 134016043 -55263511 + L1MEc LINE L1 2052 2346 -4050 * 1740 279 91 30 chr6 134016010 134016100 -55263454 + L1MEc LINE L1 2809 2892 -3323 2083 71 11 7 chr6 134016100 134016383 -55263171 + L1PA8 LINE L1 5886 6169 -3 1740 279 91 30 chr6 134016383 134016749 -55262805 + L1MEc LINE L1 2892 3234 -2981 1742 175 7 3 chr6 134016749 134017034 -55262520 + AluJb SINE Alu 1 286 -26 1740 279 91 30 chr6 134017034 134017616 -55261938 + L1MEc LINE L1 3234 3912 -2303 1398 194 32 54 chr6 134017654 134018025 -55261529 - MLT1A2 LTR MaLR -11 363 1 1551 248 37 29 chr6 134018025 134018586 -55260968 + L1MEc LINE L1 3939 4504 -1711 367 271 104 14 chr6 134018591 134018735 -55260819 + L1ME1 LINE L1 6004 6160 -6 320 362 45 6 chr6 134018976 134019153 -55260401 + L1MC4a LINE L1 5754 5937 -1871 2009 128 10 0 chr6 134019155 134019445 -55260109 + AluSg SINE Alu 1 293 -17 615 279 120 56 chr6 134020037 134020560 -55258994 + MLT1G1 LTR MaLR 1 501 -41 28 0 0 0 chr6 134020671 134020699 -55258855 + AT_rich Low_complexity Low_complexity 1 28 0 219 302 209 0 chr6 134021164 134021293 -55258261 + MIR3 SINE MIR 30 185 -23 915 107 0 8 chr6 134021726 134021848 -55257706 + AluSp/q SINE Alu 168 288 -25 332 316 51 28 chr6 134022024 134022201 -55257353 + L1ME4a LINE L1 5707 5887 -234 314 297 85 12 chr6 134022533 134022698 -55256856 + L1ME3A LINE L1 1636 1812 -4584 364 282 91 45 chr6 134023034 134023254 -55256300 + L1ME3A LINE L1 2232 2461 -3754 229 266 47 31 chr6 134023416 134023544 -55256010 + L1ME3A LINE L1 2765 2894 -3321 1377 216 114 88 chr6 134023701 134024427 -55255127 - LTR1B LTR ERV1 -81 745 1 2159 132 17 3 chr6 134024429 134024777 -55254777 - LTR1B-int LTR ERV1 -1 7090 6738 30190 142 19 8 chr6 134024782 134029670 -55249884 - LTR1B-int LTR ERV1 -493 6598 1654 253 216 135 14 chr6 134029672 134029746 -55249808 - LTR1B LTR ERV1 -150 676 594 40820 48 6 2 chr6 134029787 134035899 -55243655 + L1PA4 LINE L1 13 6150 -5 550 219 174 13 chr6 134036046 134036270 -55243284 + MER4C LTR ERV1 1 260 -205 783 185 0 0 chr6 134036279 134036398 -55243156 + FLAM_C SINE Alu 1 119 -14 576 232 24 130 chr6 134036411 134036665 -55242889 + MER4C LTR ERV1 275 465 0 622 264 78 3 chr6 134036665 134037048 -55242506 + L1ME3A LINE L1 3136 3547 -2668 1095 204 229 57 chr6 134037052 134037493 -55242061 + MER21B LTR ERV1 1 517 -346 573 254 8 0 chr6 134037488 134037614 -55241940 + MER21B LTR ERV1 685 811 -52 * 723 237 23 51 chr6 134037657 134037872 -55241682 + MER58C DNA MER1_type 7 215 0 476 299 81 3 chr6 134037873 134038157 -55241397 + L1ME3A LINE L1 3541 3846 -2369 2224 320 55 16 chr6 134038278 134039153 -55240401 + L2 LINE L2 8 916 -2398 181 304 36 0 chr6 134039134 134039190 -55240364 + MIR SINE MIR 171 228 -34 * 190 283 50 0 chr6 134039167 134039227 -55240327 + L2 LINE L2 3251 3313 0 * 1270 288 81 35 chr6 134039225 134040671 -55238883 + L1ME3A LINE L1 3860 5371 -844 12192 183 29 15 chr6 134040737 134047153 -55232401 - L1PB1 LINE L1 -2 6865 3 284 323 12 6 chr6 134047184 134047348 -55232206 + L1ME3A LINE L1 5423 5587 -652 29503 111 15 54 chr6 134047465 134053873 -55225681 + L1PA7 LINE L1 9 6150 -4 1963 225 14 16 chr6 134053931 134054438 -55225116 - MLT1A2-int LTR MaLR -865 506 1 1431 221 27 29 chr6 134054438 134054813 -55224741 - MLT1A2 LTR MaLR 0 374 1 2161 303 82 4 chr6 134054813 134055579 -55223975 - L2 LINE L2 -378 2936 2111 835 224 18 50 chr6 134055606 134055883 -55223671 + L1ME3A LINE L1 5751 6018 -221 22 35 0 0 chr6 134056340 134056369 -55223185 + AT_rich Low_complexity Low_complexity 1 29 0 211 328 0 0 chr6 134059694 134059758 -55219796 - MIR SINE MIR -112 150 87 711 77 59 18 chr6 134060351 134060521 -55219033 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 875 188 67 0 chr6 134061503 134061668 -55217886 + MER45A DNA AcHobo 3 178 0 274 287 160 47 chr6 134061669 134061819 -55217735 + MER5A DNA MER1_type 21 187 -2 1805 156 61 22 chr6 134062827 134063186 -55216368 + THE1C LTR MaLR 1 373 -2 2591 163 20 18 chr6 134063900 134064403 -55215151 + L1MB2 LINE L1 5664 6167 -4 1951 89 0 8 chr6 134065147 134065405 -55214149 + AluSx SINE Alu 37 292 -20 237 346 75 77 chr6 134066467 134067230 -55212324 + L2 LINE L2 1313 2073 -1241 1913 118 22 32 chr6 134067292 134067607 -55211947 - AluSx SINE Alu 0 312 1 1074 104 0 0 chr6 134067607 134067742 -55211812 - AluSq/x SINE Alu -178 135 1 682 340 121 47 chr6 134067743 134068562 -55210992 + L2 LINE L2 2146 3049 -223 1452 135 62 14 chr6 134070271 134070559 -55208995 - L1MA7 LINE L1 -2 6289 5988 5820 113 173 101 chr6 134070626 134072209 -55207345 + pTR5 LTR ERV1 743 2438 0 333 241 0 12 chr6 134072519 134072602 -55206952 + MIR SINE MIR 171 252 -10 2054 141 3 0 chr6 134072996 134073300 -55206254 - AluJb SINE Alu -6 306 2 198 103 0 0 chr6 134073360 134073389 -55206165 + (T)n Simple_repeat Simple_repeat 1 29 0 225 237 119 0 chr6 134073436 134073495 -55206059 + L2 LINE L2 457 522 -2792 347 277 8 25 chr6 134073518 134073637 -55205917 - MIR SINE MIR -1 261 145 229 250 113 0 chr6 134073673 134073753 -55205801 + MIR SINE MIR 126 214 -48 328 289 22 22 chr6 134073786 134073876 -55205678 - MIR SINE MIR -164 98 9 2144 131 123 5 chr6 134074030 134074413 -55205141 + MSTA LTR MaLR 1 428 0 1115 324 94 19 chr6 134074536 134075014 -55204540 + L2 LINE L2 932 1445 -1869 2617 168 13 5 chr6 134075027 134075474 -55204080 + LTR32 LTR ERVL 15 465 -6 444 296 149 32 chr6 134075491 134075933 -55203621 + L2 LINE L2 1460 1953 -1361 410 264 297 12 chr6 134075942 134076188 -55203366 + L2 LINE L2 2992 3307 -6 300 288 198 0 chr6 134077210 134077321 -55202233 + MER94 DNA DNA 1 133 -1 2296 108 0 0 chr6 134077544 134077839 -55201715 + AluSq SINE Alu 3 297 -16 294 73 0 0 chr6 134078115 134078156 -55201398 + (TG)n Simple_repeat Simple_repeat 2 42 0 24 32 0 0 chr6 134078438 134078469 -55201085 + AT_rich Low_complexity Low_complexity 1 31 0 733 128 48 0 chr6 134078470 134078595 -55200959 - L1MA6 LINE L1 -16 6284 6154 289 250 106 50 chr6 134078595 134078644 -55200910 - L3 LINE CR1 -180 1397 1352 571 213 19 0 chr6 134078644 134078752 -55200802 - MER81 DNA DNA -3 111 2 289 250 106 50 chr6 134078752 134078862 -55200692 - L3 LINE CR1 -225 1352 1229 238 330 61 17 chr6 134079810 134079925 -55199629 + L2 LINE L2 1810 1929 -1385 848 356 60 35 chr6 134079938 134080739 -55198815 + L2 LINE L2 2148 2968 -346 291 146 0 0 chr6 134082963 134083018 -55196536 + (TG)n Simple_repeat Simple_repeat 2 56 0 26 0 0 0 chr6 134086656 134086682 -55192872 + AT_rich Low_complexity Low_complexity 1 26 0 399 213 32 32 chr6 134087029 134087123 -55192431 - L2 LINE L2 -19 3294 3201 205 88 29 0 chr6 134087902 134087936 -55191618 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 2438 80 21 3 chr6 134088015 134088354 -55191200 + THE1C LTR MaLR 31 375 0 260 68 0 23 chr6 134088523 134088567 -55190987 + (TC)n Simple_repeat Simple_repeat 2 44 0 314 306 224 16 chr6 134090389 134090885 -55188669 - L2 LINE L2 -910 2404 1806 1341 166 30 72 chr6 134090885 134091284 -55188270 + MSTB2 LTR MaLR 1 455 -2 655 289 76 9 chr6 134091426 134091651 -55187903 - MIR SINE MIR -14 248 9 940 167 43 32 chr6 134091655 134091841 -55187713 - MER5A DNA MER1_type 0 189 2 506 139 63 0 chr6 134091849 134091928 -55187626 + MER5A DNA MER1_type 105 188 -1 1016 289 168 12 chr6 134092146 134092551 -55187003 + L3 LINE CR1 406 873 -704 634 264 28 17 chr6 134093186 134093364 -55186190 - MIR SINE MIR -50 212 33 21 0 0 0 chr6 134093541 134093562 -55185992 + AT_rich Low_complexity Low_complexity 1 21 0 265 358 55 49 chr6 134093680 134094007 -55185547 + L2 LINE L2 2580 2908 -406 483 278 71 47 chr6 134094387 134094599 -55184955 + MIR SINE MIR 46 262 0 999 190 79 69 chr6 134096089 134096535 -55183019 + MLT1D LTR MaLR 6 465 -2 2571 99 11 11 chr6 134096825 134097189 -55182365 - THE1B LTR MaLR 0 364 1 29 28 0 0 chr6 134097265 134097301 -55182253 + AT_rich Low_complexity Low_complexity 1 36 0 516 213 60 40 chr6 134098321 134098471 -55181083 + MIR SINE MIR 78 230 -32 213 292 56 0 chr6 134098476 134098548 -55181006 + L2 LINE L2 3234 3309 -4 596 321 51 6 chr6 134098881 134099131 -55180423 - MIR SINE MIR 0 262 2 703 217 16 0 chr6 134099908 134100037 -55179517 + FLAM_C SINE Alu 1 131 -2 401 270 107 62 chr6 134100349 134101091 -55178463 + L1M3d LINE L1 1010 1738 -4606 591 272 40 17 chr6 134101966 134102264 -55177290 + L1ME3A LINE L1 2084 2388 -4008 1090 229 118 4 chr6 134102282 134102553 -55177001 - MLT1D LTR MaLR 0 505 204 5376 252 75 44 chr6 134102557 134105215 -55174339 + L1ME3A LINE L1 2706 5445 -770 1292 235 98 18 chr6 134105200 134105600 -55173954 + L1ME3A LINE L1 5808 6239 0 * 389 258 46 88 chr6 134105661 134105921 -55173633 + L1MC4 LINE L1 7705 7953 -89 624 285 85 20 chr6 134106954 134107154 -55172400 + MIR SINE MIR 28 240 -22 216 241 0 17 chr6 134107187 134107245 -55172309 + GA-rich Low_complexity Low_complexity 2 58 0 628 279 75 5 chr6 134107758 134107959 -55171595 + MIR SINE MIR 47 261 -1 2157 113 0 25 chr6 134108406 134108724 -55170830 - AluSx SINE Alu -2 310 1 180 399 21 21 chr6 134110401 134110589 -55168965 - L2 LINE L2 -215 3057 2870 537 273 69 37 chr6 134110739 134110955 -55168599 + MLT1J1 LTR MaLR 214 436 -10 336 175 0 0 chr6 134111050 134111113 -55168441 + (TTCA)n Simple_repeat Simple_repeat 2 64 0 231 377 82 0 chr6 134111113 134111235 -55168319 - L2 LINE L2 0 3313 3182 697 198 142 12 chr6 134111278 134111440 -55168114 + MER5A DNA MER1_type 7 189 0 191 349 81 12 chr6 134111466 134111552 -55168002 - L2 LINE L2 -165 3107 3016 1988 117 32 0 chr6 134112365 134112648 -55166906 - AluSx SINE Alu -20 292 1 519 304 74 59 chr6 134112648 134112987 -55166567 + L2 LINE L2 2925 3268 -4 587 293 119 15 chr6 134113191 134113587 -55165967 + L1ME4a LINE L1 5616 6052 -69 434 331 49 34 chr6 134113911 134114237 -55165317 - L2 LINE L2 -2645 669 339 1391 139 112 1 chr6 134114995 134115317 -55164237 - MER33 DNA MER1_type -3 321 1 300 178 14 55 chr6 134115320 134115393 -55164161 - L1ME1 LINE L1 -151 6015 5946 231 36 0 0 chr6 134115423 134115451 -55164103 + (GA)n Simple_repeat Simple_repeat 1 28 0 1621 149 33 141 chr6 134115452 134115721 -55163833 - MLT2D LTR ERVL -61 353 56 2976 154 32 4 chr6 134115721 134116246 -55163308 + L1MB2 LINE L1 5621 6160 -11 1621 149 33 141 chr6 134116246 134116310 -55163244 - MLT2D LTR ERVL -358 56 66 776 173 0 8 chr6 134116310 134116437 -55163117 + FLAM_C SINE Alu 1 126 -7 1621 149 33 141 chr6 134116437 134116498 -55163056 - MLT2D LTR ERVL -347 67 1 1432 185 11 0 chr6 134116503 134116773 -55162781 - L1ME1 LINE L1 -220 5946 5674 557 184 0 0 chr6 134116896 134116999 -55162555 + L1PB1 LINE L1 944 1046 -5817 14296 201 15 13 chr6 134117003 134118408 -55161146 + L1PB1 LINE L1 1094 2494 -4373 4652 35 17 16 chr6 134118408 134118985 -55160569 + L1PA4 LINE L1 5572 6149 -6 14296 201 15 13 chr6 134118985 134122769 -55156785 + L1PB1 LINE L1 2494 6496 -371 432 0 0 0 chr6 134122779 134122827 -55156727 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 279 98 27 54 chr6 134122833 134122945 -55156609 + (TA)n Simple_repeat Simple_repeat 1 109 0 2179 148 6 0 chr6 134122946 134123310 -55156244 + L1PB1 LINE L1 6500 6865 -2 268 304 112 16 chr6 134123614 134123739 -55155815 - L2 LINE L2 -2 3311 3175 448 332 63 37 chr6 134124083 134124351 -55155203 - L2 LINE L2 -3 3310 3036 306 279 28 101 chr6 134124322 134124501 -55155053 - L2 LINE L2 -3148 166 1 * 308 326 116 23 chr6 134125692 134125864 -55153690 - L2 LINE L2 -38 3234 3047 30 27 0 0 chr6 134128153 134128190 -55151364 + AT_rich Low_complexity Low_complexity 1 37 0 25 65 0 0 chr6 134128469 134128515 -55151039 + AT_rich Low_complexity Low_complexity 1 46 0 3405 219 88 34 chr6 134128625 134130437 -55149117 - L1ME2 LINE L1 -6 6158 4140 236 325 13 13 chr6 134131544 134131621 -55147933 + MER5B DNA MER1_type 1 77 -101 1631 226 71 71 chr6 134131689 134132312 -55147242 - MLT1E2 LTR MaLR 0 626 4 183 42 0 0 chr6 134133560 134133584 -55145970 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2340 104 0 0 chr6 134135883 134136182 -55143372 - AluSg SINE Alu -11 299 1 434 200 114 14 chr6 134138448 134138588 -55140966 - Charlie5 DNA MER1_type 0 2624 2471 311 254 0 0 chr6 134138591 134138658 -55140896 - Charlie5 DNA MER1_type -2545 67 1 203 279 135 29 chr6 134138900 134139004 -55140550 + MIR SINE MIR 40 154 -108 637 281 129 9 chr6 134139291 134139515 -55140039 - MIR SINE MIR -10 252 2 618 225 7 7 chr6 134140382 134140533 -55139021 - L1MB2 LINE L1 -11 6160 6010 498 85 13 20 chr6 134140534 134140620 -55138934 - L1MB2 LINE L1 -271 5912 5832 353 239 86 0 chr6 134143220 134143337 -55136217 + MER103 DNA DNA 35 161 -5 1994 164 0 3 chr6 134143601 134143912 -55135642 + AluJb SINE Alu 1 310 -2 208 319 11 32 chr6 134145369 134145463 -55134091 - MIR3 SINE MIR -3 205 114 726 159 91 17 chr6 134146099 134146275 -55133279 + MER53 DNA DNA 1 189 0 212 269 60 0 chr6 134146278 134146345 -55133209 - MIR SINE MIR -73 189 119 226 313 60 12 chr6 134146505 134146588 -55132966 - L2 LINE L2 -194 3078 2992 181 322 33 11 chr6 134146791 134146881 -55132673 - L2 LINE L2 -583 2731 2640 217 245 0 0 chr6 134146885 134146934 -55132620 - L2 LINE L2 -1 3312 3264 * 551 316 107 47 chr6 134146932 134147597 -55131957 - L2 LINE L2 -678 2636 1932 195 129 0 0 chr6 134147983 134148014 -55131540 + (CA)n Simple_repeat Simple_repeat 2 32 0 815 153 0 15 chr6 134148117 134148248 -55131306 + FLAM_C SINE Alu 1 129 -4 224 222 19 0 chr6 134149116 134149170 -55130384 + (CA)n Simple_repeat Simple_repeat 1 55 0 579 272 50 54 chr6 134149170 134149627 -55129927 - L1ME LINE L1 -438 5683 5185 721 292 25 19 chr6 134151948 134152263 -55127291 - L1ME3 LINE L1 -30 6132 5816 930 227 17 13 chr6 134152308 134152546 -55127008 + L1MB8 LINE L1 5940 6178 0 577 233 0 0 chr6 134152540 134152673 -55126881 - L1ME3 LINE L1 -373 5789 5657 * 23 33 0 0 chr6 134153059 134153089 -55126465 + AT_rich Low_complexity Low_complexity 1 30 0 510 302 66 10 chr6 134153173 134153461 -55126093 - L1ME4a LINE L1 -295 5826 5523 397 296 48 0 chr6 134153523 134153648 -55125906 + L3 LINE CR1 1440 1570 -7 24 0 0 0 chr6 134154929 134154953 -55124601 + AT_rich Low_complexity Low_complexity 1 24 0 352 289 39 26 chr6 134157747 134157903 -55121651 + MIR SINE MIR 48 205 -57 209 324 111 9 chr6 134158625 134158733 -55120821 - L2 LINE L2 -3 3310 3192 198 274 20 0 chr6 134158735 134158786 -55120768 + L2 LINE L2 3176 3227 -86 198 174 0 0 chr6 134159337 134159383 -55120171 + CT-rich Low_complexity Low_complexity 1 46 0 4831 132 11 4 chr6 134159433 134160246 -55119308 - L1PA16 LINE L1 -7 6159 5341 525 236 8 0 chr6 134160246 134160384 -55119170 - L1MA10 LINE L1 -30 6293 5996 1820 136 85 20 chr6 134160746 134161098 -55118456 + THE1C LTR MaLR 1 375 0 190 265 59 15 chr6 134161461 134161529 -55118025 + MIR3 SINE MIR 136 206 -2 715 258 138 5 chr6 134161756 134161973 -55117581 - MIR SINE MIR -10 252 7 497 324 41 18 chr6 134161960 134162179 -55117375 - MIR SINE MIR -38 224 1 * 307 269 174 28 chr6 134162189 134162579 -55116975 + L1ME4a LINE L1 5602 6048 -73 502 286 94 26 chr6 134163661 134163853 -55115701 - MIR SINE MIR -30 232 28 21 0 0 0 chr6 134164517 134164538 -55115016 + AT_rich Low_complexity Low_complexity 1 21 0 350 245 157 25 chr6 134165758 134165917 -55113637 - L1MC/D LINE L1 -2072 5736 5557 34 0 0 0 chr6 134165922 134165956 -55113598 + AT_rich Low_complexity Low_complexity 1 34 0 203 86 0 29 chr6 134166118 134166153 -55113401 + (TA)n Simple_repeat Simple_repeat 2 35 0 2167 119 76 15 chr6 134166415 134166758 -55112796 + THE1B LTR MaLR 1 364 0 11068 94 25 15 chr6 134166758 134168323 -55111231 + THE1B-int LTR MaLR 1 1580 0 2034 108 142 16 chr6 134168323 134168646 -55110908 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr6 134168747 134168778 -55110776 + AT_rich Low_complexity Low_complexity 1 31 0 1274 174 0 5 chr6 134168962 134169175 -55110379 - AluSg/x SINE Alu -4 306 95 276 122 0 0 chr6 134169275 134169316 -55110238 + MSTB1 LTR MaLR 392 432 0 2101 83 122 12 chr6 134169324 134169660 -55109894 - THE1C LTR MaLR -2 373 1 950 230 149 9 chr6 134170471 134170793 -55108761 + L1ME3A LINE L1 5781 6147 -23 353 214 219 28 chr6 134172146 134172361 -55107193 + MER112 DNA MER1_type 1 256 0 761 122 52 0 chr6 134172462 134172577 -55106977 - FLAM_A SINE Alu -12 121 1 2505 55 7 3 chr6 134172594 134172904 -55106650 - AluY SINE Alu 0 311 1 1843 179 0 7 chr6 134173876 134174167 -55105387 - AluJb SINE Alu -23 289 1 324 294 73 0 chr6 134175506 134175615 -55103939 + L1ME3 LINE L1 5965 6081 -81 2034 109 28 62 chr6 134175674 134175996 -55103558 + AluSx SINE Alu 1 311 -1 862 222 117 69 chr6 134176176 134176613 -55102941 + MER39 LTR ERV1 250 707 0 325 250 30 54 chr6 134176904 134177072 -55102482 + L1MC5 LINE L1 7773 7936 -25 197 270 139 70 chr6 134177072 134177187 -55102367 - MER5B DNA MER1_type -53 125 3 190 311 115 0 chr6 134177192 134177253 -55102301 - L2 LINE L2 -1 3271 3204 2044 117 0 0 chr6 134178046 134178319 -55101235 - AluSg SINE Alu -37 273 1 1013 91 8 0 chr6 134178319 134178451 -55101103 - AluSg SINE Alu -177 133 1 1138 229 63 68 chr6 134178451 134178612 -55100942 - HAL1 LINE L1 -935 1572 1412 2012 163 10 52 chr6 134178612 134179017 -55100537 + MLT1B LTR MaLR 3 390 0 1138 229 63 68 chr6 134179017 134179474 -55100080 - HAL1 LINE L1 -1095 1412 957 245 170 0 0 chr6 134179499 134179552 -55100002 - L1MA1 LINE L1 0 6302 6250 2249 116 0 0 chr6 134179552 134179854 -55099700 - AluSq SINE Alu -11 302 1 370 191 91 18 chr6 134180374 134180484 -55099070 + MER58 DNA MER1_type 32 149 -2271 913 149 57 89 chr6 134180486 134180797 -55098757 - MER57A LTR ERV1 0 403 1 378 172 0 133 chr6 134180798 134180926 -55098628 - MER57A-int LTR ERV1 -2 7535 7425 250 157 181 12 chr6 134180926 134181009 -55098545 - LTR54B LTR ERV1 -121 377 281 1930 139 4 0 chr6 134181018 134181284 -55098270 - AluSx SINE Alu -45 267 1 312 150 33 0 chr6 134181312 134181372 -55098182 - LTR54B LTR ERV1 -211 287 226 759 106 63 21 chr6 134181412 134181554 -55098000 - LTR54B LTR ERV1 -350 148 1 547 189 25 16 chr6 134181575 134181697 -55097857 + MER58 DNA MER1_type 2294 2416 -4 753 269 54 22 chr6 134181700 134181923 -55097631 + MIR SINE MIR 15 244 -18 2290 111 3 0 chr6 134182135 134182442 -55097112 + AluSg SINE Alu 1 308 -2 2083 142 54 45 chr6 134182705 134183149 -55096405 - L1MB8 LINE L1 -9 6169 5722 1249 172 0 19 chr6 134183271 134183480 -55096074 + AluJo SINE Alu 82 286 -26 297 258 75 0 chr6 134184498 134184591 -55094963 - MER103 DNA DNA 0 166 67 416 117 0 0 chr6 134184612 134184672 -55094882 - Alu SINE Alu -13 298 239 521 147 55 9 chr6 134185150 134185259 -55094295 - MER103 DNA DNA -50 116 3 313 250 26 0 chr6 134185533 134185609 -55093945 - L1MC4 LINE L1 -1339 6703 6626 355 239 0 0 chr6 134185612 134185683 -55093871 - MIR SINE MIR -112 150 80 751 265 30 10 chr6 134186247 134186447 -55093107 + MIR SINE MIR 59 262 0 218 268 0 0 chr6 134186453 134186524 -55093030 + (TTA)n Simple_repeat Simple_repeat 3 73 0 939 155 7 7 chr6 134186954 134187102 -55092452 - AluJo SINE Alu -164 148 1 251 275 110 0 chr6 134187154 134187245 -55092309 - MIR SINE MIR -99 163 63 718 240 0 11 chr6 134187406 134187585 -55091969 - MLT1A2 LTR MaLR -25 349 173 517 81 0 40 chr6 134187585 134187684 -55091870 + (GA)n Simple_repeat Simple_repeat 2 96 0 745 161 15 0 chr6 134187708 134187845 -55091709 - MLT1A2 LTR MaLR -235 139 1 837 145 38 21 chr6 134188008 134188194 -55091360 + MER53 DNA DNA 1 189 0 1252 194 28 10 chr6 134188348 134188637 -55090917 - L1MB3 LINE L1 -7 6176 5883 251 188 18 170 chr6 134189376 134189488 -55090066 - MLT1J2 LTR MaLR -288 162 68 222 316 53 0 chr6 134189680 134189775 -55089779 + L2 LINE L2 3208 3307 -6 254 313 48 0 chr6 134189857 134189940 -55089614 + L2 LINE L2 2395 2481 -833 305 135 0 0 chr6 134189949 134190001 -55089553 - MLT1F LTR MaLR -1 541 490 427 107 13 0 chr6 134190006 134190081 -55089473 - MLT1F LTR MaLR -185 357 282 437 239 187 0 chr6 134190169 134190324 -55089230 - L2 LINE L2 0 3313 3130 1659 229 51 0 chr6 134190366 134190776 -55088778 - MLT1F LTR MaLR -111 431 1 382 343 60 15 chr6 134190780 134190981 -55088573 + L2 LINE L2 2479 2688 -626 1080 264 94 39 chr6 134191005 134191598 -55087956 - L2 LINE L2 0 3313 2681 416 447 58 26 chr6 134191622 134191997 -55087557 + L2 LINE L2 2716 3105 -208 1296 207 0 29 chr6 134192003 134192174 -55087380 - AluJb SINE Alu -1 311 121 240 35 0 0 chr6 134192174 134192203 -55087351 + (T)n Simple_repeat Simple_repeat 1 29 0 1296 207 0 29 chr6 134192203 134192283 -55087271 - AluJb SINE Alu -191 121 40 243 216 257 0 chr6 134192305 134192379 -55087175 + L2 LINE L2 3221 3313 0 211 276 60 26 chr6 134192682 134192798 -55086756 - MIR SINE MIR -59 149 30 719 97 19 0 chr6 134193275 134193378 -55086176 - L1PA10 LINE L1 0 6168 6064 1026 161 5 0 chr6 134193378 134193571 -55085983 - L1P LINE L1 -991 5155 4962 530 246 22 22 chr6 134194118 134194252 -55085302 + MIR SINE MIR 20 153 -109 1144 188 112 45 chr6 134194323 134194679 -55084875 - L1ME1 LINE L1 -2 6164 5785 1385 226 48 6 chr6 134195060 134195397 -55084157 + MER52A LTR ERV1 1405 1755 0 917 281 35 50 chr6 134195397 134195998 -55083556 - L1ME LINE L1 -5094 976 385 320 335 41 6 chr6 134195984 134196154 -55083400 - L1ME LINE L1 -5575 495 320 * 465 115 0 0 chr6 134197006 134197084 -55082470 - L1M4 LINE L1 -2475 3671 3594 1247 250 116 41 chr6 134197084 134197929 -55081625 - L1MDa LINE L1 -3983 2557 1650 1579 239 119 15 chr6 134197936 134198405 -55081149 - LTR40a LTR ERVL -1 518 1 295 245 31 63 chr6 134198418 134198577 -55080977 - L1MDa LINE L1 -4904 1636 1483 2569 163 35 188 chr6 134198625 134199880 -55079674 + MER52C LTR ERV1 1 1341 -164 380 325 3 21 chr6 134199953 134200176 -55079378 + G-rich Low_complexity Low_complexity 1 218 0 236 172 0 35 chr6 134200511 134200569 -55078985 + (CTTAT)n Simple_repeat Simple_repeat 3 58 0 26 64 0 0 chr6 134200984 134201031 -55078523 + AT_rich Low_complexity Low_complexity 1 47 0 201 286 107 0 chr6 134204360 134204416 -55075138 - L2 LINE L2 -1 3271 3210 732 257 23 6 chr6 134204465 134204640 -55074914 - MER45A DNA AcHobo 0 178 1 225 185 15 31 chr6 134207536 134207601 -55071953 + (TA)n Simple_repeat Simple_repeat 2 65 0 22 0 0 0 chr6 134207604 134207626 -55071928 + AT_rich Low_complexity Low_complexity 1 22 0 403 250 17 42 chr6 134209595 134209715 -55069839 + L2 LINE L2 2368 2484 -830 773 274 100 17 chr6 134209725 134210086 -55069468 + L2 LINE L2 2764 3160 -153 2422 143 19 2 chr6 134211585 134211997 -55067557 - L1PA16 LINE L1 -4 6162 5744 6909 104 5 19 chr6 134212001 134213073 -55066481 + MER11C LTR ERVK 1 1057 -14 1001 160 14 16 chr6 134213090 134213321 -55066233 - L1PA16 LINE L1 -429 5737 5512 182 294 106 35 chr6 134213381 134213466 -55066088 + L2 LINE L2 3208 3298 -15 391 257 97 9 chr6 134215196 134215309 -55064245 + L2 LINE L2 3190 3312 -1 205 248 310 28 chr6 134215439 134215584 -55063970 + MIR SINE MIR 76 261 -1 322 238 85 73 chr6 134217128 134217292 -55062262 - MLT1H LTR MaLR 0 549 384 189 121 0 0 chr6 134217474 134217507 -55062047 + (CA)n Simple_repeat Simple_repeat 2 34 0 453 201 216 14 chr6 134217517 134217656 -55061898 - MLT1H LTR MaLR -343 206 40 248 220 51 34 chr6 134218951 134219069 -55060485 - MLT1H LTR MaLR 0 577 432 1037 260 18 11 chr6 134219154 134219431 -55060123 - MLT1H LTR MaLR -262 287 9 1619 163 35 35 chr6 134219800 134220138 -55059416 + MER44D DNA MER2_type 1 608 -1 855 200 0 6 chr6 134221103 134221278 -55058276 + MER104 DNA Tc2 4 177 -3 2235 120 7 0 chr6 134222814 134223122 -55056432 - AluSg SINE Alu 0 310 1 1960 166 3 0 chr6 134223750 134224052 -55055502 - AluSx SINE Alu -9 303 1 630 291 26 9 chr6 134224139 134224366 -55055188 + L1ME LINE L1 5529 5759 -362 1395 219 123 12 chr6 134224366 134224820 -55054734 + MLT1H LTR MaLR 1 547 -2 21 0 0 0 chr6 134224977 134224998 -55054556 + AT_rich Low_complexity Low_complexity 1 21 0 2890 169 11 57 chr6 134225056 134225684 -55053870 + LTR9 LTR ERV1 1 599 -13 21 0 0 0 chr6 134227381 134227402 -55052152 + AT_rich Low_complexity Low_complexity 1 21 0 4065 173 44 17 chr6 134227651 134228593 -55050961 + L1MB8 LINE L1 5140 6113 -65 2241 107 10 0 chr6 134228593 134228892 -55050662 - AluSx SINE Alu -10 302 1 4065 173 44 17 chr6 134228892 134228957 -55050597 + L1MB8 LINE L1 6113 6175 -3 756 244 57 29 chr6 134229064 134229379 -55050175 + L1MDa LINE L1 75 398 -6142 436 349 68 58 chr6 134229437 134229935 -55049619 + L1MDa LINE L1 434 951 -5589 4097 226 62 32 chr6 134230197 134231300 -55048254 + L1MDa LINE L1 984 2147 -4393 2210 144 0 9 chr6 134231300 134231640 -55047914 - MER1B DNA MER1_type 0 337 1 4097 226 62 32 chr6 134231640 134232046 -55047508 + L1MDa LINE L1 2147 2539 -4001 553 218 71 35 chr6 134232060 134232230 -55047324 + MLT1A1 LTR MaLR 18 193 -172 2701 242 58 38 chr6 134232232 134233229 -55046325 + L1MDa LINE L1 2927 3957 -2583 2209 96 0 0 chr6 134233229 134233534 -55046020 + AluSg SINE Alu 1 305 0 2701 242 58 38 chr6 134233534 134233750 -55045804 + L1MDa LINE L1 3957 4167 -2373 1019 259 34 8 chr6 134233781 134234043 -55045511 + L1MB1 LINE L1 782 1050 -5603 967 293 20 8 chr6 134234095 134234554 -55045000 + L1MB1 LINE L1 963 1274 -5379 2930 266 58 34 chr6 134234576 134236301 -55043253 + L1MB1 LINE L1 1213 2651 -4081 591 241 8 4 chr6 134236301 134236459 -55043095 + L1MCa LINE L1 1597 1775 -4607 11466 208 37 27 chr6 134236459 134239211 -55040343 + L1MB1 LINE L1 2675 5400 -1354 1732 172 11 7 chr6 134239211 134239496 -55040058 + AluJb SINE Alu 1 286 -26 234 116 0 0 chr6 134239505 134239548 -55040006 + (TAAAA)n Simple_repeat Simple_repeat 3 45 0 11466 208 37 27 chr6 134239548 134240813 -55038741 + L1MB1 LINE L1 5407 6752 -2 2993 267 49 15 chr6 134240841 134242009 -55037545 + L1M4 LINE L1 3740 4946 -1200 289 241 19 149 chr6 134242283 134242544 -55037010 - L1ME LINE L1 -5514 556 330 21 0 0 0 chr6 134242573 134242594 -55036960 + AT_rich Low_complexity Low_complexity 1 21 0 275 354 66 22 chr6 134245639 134245820 -55033734 + MIR3 SINE MIR 13 201 -7 339 311 54 36 chr6 134245972 134246139 -55033415 - MIR SINE MIR -70 192 23 272 229 12 0 chr6 134246567 134246650 -55032904 + (TA)n Simple_repeat Simple_repeat 2 85 0 232 189 0 0 chr6 134246650 134246703 -55032851 + L1MC4 LINE L1 6640 6692 -1350 1225 181 129 8 chr6 134246704 134246952 -55032602 - AluSg1 SINE Alu -31 278 1 183 42 0 0 chr6 134246953 134246977 -55032577 + (T)n Simple_repeat Simple_repeat 1 24 0 193 360 0 0 chr6 134247466 134247516 -55032038 + L2 LINE L2 3139 3188 -84 366 159 0 0 chr6 134248327 134248396 -55031158 + (TCCA)n Simple_repeat Simple_repeat 2 70 0 261 214 0 43 chr6 134248471 134248541 -55031013 + CT-rich Low_complexity Low_complexity 3 69 0 216 317 93 54 chr6 134248733 134248938 -55030616 - L2 LINE L2 -237 3035 2823 222 37 0 0 chr6 134250111 134250138 -55029416 + (TAA)n Simple_repeat Simple_repeat 2 28 0 696 267 68 0 chr6 134250191 134250382 -55029172 - MIR SINE MIR -54 208 5 210 290 14 0 chr6 134251677 134251746 -55027808 + CT-rich Low_complexity Low_complexity 3 72 0 21 0 0 0 chr6 134251828 134251849 -55027705 + AT_rich Low_complexity Low_complexity 1 21 0 247 130 0 0 chr6 134251881 134251927 -55027627 + LTR66 LTR ERVL 394 439 -171 236 222 0 0 chr6 134251942 134252005 -55027549 + L1MC4 LINE L1 6641 6703 -1339 228 193 159 11 chr6 134252036 134252124 -55027430 + L1MC4 LINE L1 6603 6703 -1339 1335 226 45 6 chr6 134252966 134253298 -55026256 + MER63C DNA MER1_type 61 405 -525 10814 130 40 11 chr6 134253318 134253540 -55026014 - Tigger1 DNA MER2_type 0 2418 2204 2248 98 7 0 chr6 134253540 134253836 -55025718 - AluSx SINE Alu -14 298 1 10814 130 40 11 chr6 134253836 134255388 -55024166 - Tigger1 DNA MER2_type -214 2204 593 5608 146 34 11 chr6 134255391 134256396 -55023158 - L1MA4 LINE L1 -9 6291 5264 3223 171 19 48 chr6 134256397 134257029 -55022525 - Tigger1 DNA MER2_type -1804 614 1 407 128 13 26 chr6 134257042 134257120 -55022434 + MER63C DNA MER1_type 437 513 -417 1055 229 92 56 chr6 134257121 134257458 -55022096 + MLT1A2 LTR MaLR 1 349 -25 234 113 0 65 chr6 134257577 134257639 -55021915 + (TA)n Simple_repeat Simple_repeat 2 59 0 289 263 0 13 chr6 134262220 134262296 -55017258 + MIR SINE MIR 124 198 -64 1748 185 31 8 chr6 134262346 134262703 -55016851 - MLT1A1 LTR MaLR 0 365 1 240 278 0 0 chr6 134263201 134263255 -55016299 + L2 LINE L2 3256 3309 -4 274 328 147 23 chr6 134263345 134263610 -55015944 - L2 LINE L2 -424 2890 2593 1778 158 47 99 chr6 134263774 134264267 -55015287 + MLT1C LTR MaLR 1 467 0 559 309 95 29 chr6 134264679 134265193 -55014361 - L1ME4a LINE L1 -248 5873 5326 2413 31 45 0 chr6 134265258 134265545 -55014009 + AluY SINE Alu 1 300 -11 182 325 60 8 chr6 134266611 134266728 -55012826 - L2 LINE L2 -1018 2296 2174 524 245 98 16 chr6 134267066 134267231 -55012323 - MIR SINE MIR -30 232 60 255 366 86 8 chr6 134267560 134267803 -55011751 - L2 LINE L2 -1890 1424 1163 204 281 193 0 chr6 134267844 134267901 -55011653 - L2 LINE L2 -4 3268 3201 315 232 85 55 chr6 134270423 134270587 -55008967 - L1MEc LINE L1 -3668 2547 2379 2240 228 51 76 chr6 134270613 134271699 -55007855 - L1MDa LINE L1 -5340 1200 15 261 273 51 23 chr6 134271703 134271902 -55007652 - L1MEc LINE L1 -3905 2329 2144 670 306 125 32 chr6 134272226 134272970 -55006584 - L1MEc LINE L1 -4974 1231 419 1459 183 56 3 chr6 134274430 134274786 -55004768 - MER3 DNA MER1_type 0 2618 2244 336 204 146 19 chr6 134274803 134274906 -55004648 - MER3 DNA MER1_type -87 122 54 1117 260 98 92 chr6 134277039 134277331 -55002223 - L2 LINE L2 -714 2600 2302 2424 67 0 19 chr6 134277331 134277646 -55001908 + AluY SINE Alu 1 309 -2 1117 260 98 92 chr6 134277646 134277915 -55001639 - L2 LINE L2 -1012 2302 2036 242 89 44 0 chr6 134279877 134279922 -54999632 + A-rich Low_complexity Low_complexity 3 49 0 21 0 0 0 chr6 134281163 134281184 -54998370 + AT_rich Low_complexity Low_complexity 1 21 0 251 292 133 17 chr6 134281702 134281822 -54997732 + MIR3 SINE MIR 13 146 -62 235 256 66 58 chr6 134281983 134282104 -54997450 - MIR SINE MIR -112 150 29 28 29 0 0 chr6 134282605 134282640 -54996914 + AT_rich Low_complexity Low_complexity 1 35 0 2404 56 0 13 chr6 134282759 134283061 -54996493 - AluY SINE Alu -13 298 1 1798 159 10 83 chr6 134283199 134283607 -54995947 + L1MA7 LINE L1 5736 6113 -178 23 0 0 0 chr6 134283740 134283763 -54995791 + AT_rich Low_complexity Low_complexity 1 23 0 218 400 9 9 chr6 134284958 134285063 -54994491 - MIR SINE MIR -118 144 40 458 303 48 87 chr6 134285983 134286422 -54993132 + L1ME2 LINE L1 348 769 -5603 3185 263 59 49 chr6 134286567 134287494 -54992060 + L1ME2 LINE L1 780 1696 -4686 4719 102 22 0 chr6 134287494 134288169 -54991385 - L1PA16 LINE L1 -9 6157 5468 3185 263 59 49 chr6 134288169 134289860 -54989694 + L1ME2 LINE L1 1696 3459 -2923 1288 144 90 6 chr6 134289867 134290171 -54989383 - Tigger4(Zombi) DNA MER2_type 0 2731 1 5097 229 75 34 chr6 134290221 134290437 -54989117 + L1ME2 LINE L1 3525 3731 -2669 2254 166 25 28 chr6 134290437 134290872 -54988682 + Tigger2a DNA MER2_type 1 434 0 5097 229 75 34 chr6 134290872 134293407 -54986147 + L1ME2 LINE L1 3731 6381 -19 2472 72 0 3 chr6 134293941 134294247 -54985307 + AluY SINE Alu 2 306 -5 195 42 0 0 chr6 134296157 134296181 -54983373 + (TAA)n Simple_repeat Simple_repeat 3 26 0 503 262 119 48 chr6 134296277 134296487 -54983067 - MIR SINE MIR -1 261 37 366 123 0 0 chr6 134296825 134296882 -54982672 + (TAA)n Simple_repeat Simple_repeat 3 59 0 356 303 139 43 chr6 134296899 134297107 -54982447 - MIR SINE MIR -24 238 11 182 309 12 60 chr6 134297120 134297204 -54982350 - MIR SINE MIR -110 152 73 1841 157 136 18 chr6 134297208 134297591 -54981963 - MSTA LTR MaLR 0 428 1 716 327 110 16 chr6 134298930 134299303 -54980251 + LTR16B LTR ERVL 57 464 0 704 194 97 0 chr6 134299352 134299507 -54980047 - MER58C DNA MER1_type -1 214 45 225 315 0 22 chr6 134299874 134299963 -54979591 + GA-rich Low_complexity Low_complexity 3 89 0 235 369 36 66 chr6 134301353 134301746 -54977808 + L2 LINE L2 2877 3257 -15 369 286 40 88 chr6 134302022 134302351 -54977203 + L1ME LINE L1 4991 5303 -843 455 270 140 18 chr6 134302390 134302669 -54976885 + L1ME LINE L1 5385 5660 -461 621 298 83 1 chr6 134303187 134303539 -54976015 - LTR33 LTR ERVL -114 407 1 293 164 30 0 chr6 134304981 134305048 -54974506 + GA-rich Low_complexity Low_complexity 3 71 0 293 275 113 21 chr6 134305718 134305958 -54973596 - L1ME LINE L1 -303 5818 5557 2258 95 0 7 chr6 134305977 134306271 -54973283 + AluSx SINE Alu 1 292 -20 340 316 29 15 chr6 134307694 134307830 -54971724 - MIR3 SINE MIR -68 140 3 201 299 98 37 chr6 134307898 134308038 -54971516 + MIR SINE MIR 16 164 -98 319 270 36 27 chr6 134308144 134308255 -54971299 + MLT1I LTR MaLR 58 169 -240 1968 108 3 17 chr6 134308682 134309000 -54970554 - AluY SINE Alu 0 314 1 1118 188 0 5 chr6 134309298 134309490 -54970064 - MLT1B LTR MaLR -3 387 197 332 93 0 19 chr6 134309492 134309546 -54970008 + (TG)n Simple_repeat Simple_repeat 1 53 0 328 194 0 42 chr6 134309688 134309760 -54969794 - MLT1B LTR MaLR -302 72 4 784 278 93 56 chr6 134310176 134310500 -54969054 + MLT1I LTR MaLR 59 394 -15 434 155 0 0 chr6 134310774 134310858 -54968696 - AluS SINE Alu -1 311 228 * 776 137 17 0 chr6 134310851 134310968 -54968586 - AluSq/x SINE Alu -171 142 24 230 318 113 13 chr6 134313002 134313153 -54966401 - MIR3 SINE MIR -5 203 38 378 288 18 78 chr6 134316198 134316417 -54963137 + MER102b DNA MER1_type 132 337 -4 212 358 63 11 chr6 134317754 134317849 -54961705 + L2 LINE L2 3156 3255 -17 297 225 34 22 chr6 134318494 134318583 -54960971 + MER112 DNA MER1_type 144 233 -27 320 85 0 21 chr6 134318790 134318837 -54960717 + MLT1E2 LTR MaLR 1 46 -608 1822 228 71 7 chr6 134318997 134319436 -54960118 + MLT1E2 LTR MaLR 160 626 0 265 306 41 50 chr6 134319794 134319915 -54959639 - L2 LINE L2 0 3313 3194 378 86 49 55 chr6 134320020 134320183 -54959371 + (TATAA)n Simple_repeat Simple_repeat 5 166 0 402 125 67 0 chr6 134320187 134320291 -54959263 + (TA)n Simple_repeat Simple_repeat 1 111 0 280 52 104 26 chr6 134320316 134320393 -54959161 + (TATAA)n Simple_repeat Simple_repeat 5 87 0 896 187 190 10 chr6 134320625 134320914 -54958640 - L1ME3A LINE L1 -238 5932 5592 750 265 16 127 chr6 134320951 134321321 -54958233 + MLT1E LTR MaLR 9 337 -256 6265 45 3 0 chr6 134321569 134322327 -54957227 + L1PA6 LINE L1 5367 6126 -28 824 210 73 44 chr6 134322327 134322575 -54956979 + pTR5 LTR ERV1 743 997 -1441 1317 87 0 26 chr6 134322581 134322776 -54956778 + pTR5 LTR ERV1 1836 2025 -413 259 265 31 10 chr6 134322776 134322874 -54956680 + LTR30 LTR ERV1 544 643 -79 677 109 0 0 chr6 134322876 134322968 -54956586 + pTR5 LTR ERV1 303 394 -2044 198 0 0 0 chr6 134322989 134323011 -54956543 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2286 99 10 0 chr6 134323139 134323442 -54956112 - AluSg SINE Alu -4 306 1 343 264 80 48 chr6 134323449 134323574 -54955980 - L1ME LINE L1 -4937 1133 1005 256 183 77 82 chr6 134323597 134323773 -54955781 - L1ME LINE L1 -5110 960 792 2353 60 0 3 chr6 134324408 134324717 -54954837 + AluY SINE Alu 3 310 0 26 30 0 0 chr6 134325265 134325298 -54954256 + AT_rich Low_complexity Low_complexity 1 33 0 270 50 0 0 chr6 134326748 134326788 -54952766 - L1PA11 LINE L1 -2 6172 6133 268 286 240 52 chr6 134327349 134327503 -54952051 + MIR SINE MIR 3 185 -77 23 33 0 0 chr6 134327663 134327693 -54951861 + AT_rich Low_complexity Low_complexity 1 30 0 632 200 180 0 chr6 134328141 134328291 -54951263 - MER5A DNA MER1_type 0 189 13 26 0 0 0 chr6 134330064 134330090 -54949464 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr6 134330858 134330881 -54948673 + (T)n Simple_repeat Simple_repeat 1 23 0 243 146 0 0 chr6 134331795 134331836 -54947718 + (TG)n Simple_repeat Simple_repeat 1 41 0 357 174 0 0 chr6 134331836 134331905 -54947649 + (CA)n Simple_repeat Simple_repeat 2 70 0 943 321 139 6 chr6 134332427 134332900 -54946654 - L2 LINE L2 -365 2949 2414 206 297 125 61 chr6 134335629 134335666 -54943888 + L2 LINE L2 1621 1654 -1660 849 207 121 0 chr6 134335666 134335864 -54943690 + MER58A DNA MER1_type 2 223 -1 206 297 125 61 chr6 134335864 134336153 -54943401 + L2 LINE L2 1654 1968 -1346 763 170 64 94 chr6 134336200 134336573 -54942981 - MER31A LTR ERV1 0 485 1 251 319 164 34 chr6 134336635 134336842 -54942712 + L2 LINE L2 2561 2794 -520 203 310 198 32 chr6 134337258 134337693 -54941861 - L2 LINE L2 -1604 1710 1204 185 260 20 0 chr6 134338675 134338725 -54940829 + L2 LINE L2 3263 3313 0 1827 151 32 4 chr6 134339330 134339609 -54939945 - AluSx SINE Alu -25 287 1 375 193 169 0 chr6 134339742 134339825 -54939729 - MIR SINE MIR -70 192 96 490 238 34 48 chr6 134339892 134340039 -54939515 - MIR SINE MIR -98 164 20 301 222 0 0 chr6 134342562 134342625 -54936929 + MER103 DNA DNA 22 84 -82 183 289 0 0 chr6 134344860 134344912 -54934642 - L2 LINE L2 -215 3057 3006 198 326 49 76 chr6 134345161 134345345 -54934209 + L2 LINE L2 1008 1186 -2128 778 333 98 57 chr6 134345386 134345869 -54933685 + L2 LINE L2 1276 1738 -1576 2193 81 0 3 chr6 134345869 134346210 -54933344 + AluY SINE Alu 1 340 0 778 333 98 57 chr6 134346210 134346264 -54933290 + L2 LINE L2 1738 1788 -1526 2169 139 116 10 chr6 134346264 134346651 -54932903 + MSTA LTR MaLR 1 428 0 778 333 98 57 chr6 134346651 134346952 -54932602 + L2 LINE L2 1788 2075 -1239 1481 206 45 14 chr6 134346952 134347306 -54932248 + MLT1A1 LTR MaLR 1 365 0 778 333 98 57 chr6 134347306 134347615 -54931939 + L2 LINE L2 2075 2473 -841 4071 93 7 2 chr6 134347616 134348503 -54931051 - L1P4 LINE L1 -368 5800 4909 23 0 0 0 chr6 134348735 134348758 -54930796 + AT_rich Low_complexity Low_complexity 1 23 0 8626 132 98 3 chr6 134348818 134350283 -54929271 - L1P4 LINE L1 -1235 4911 3300 2173 128 3 0 chr6 134350283 134350587 -54928967 - AluSq SINE Alu -8 305 1 8626 132 98 3 chr6 134350587 134350617 -54928937 - L1P4 LINE L1 -2846 3300 3274 309 295 104 103 chr6 134350622 134350660 -54928894 + L2 LINE L2 2726 2762 -510 1216 185 35 11 chr6 134350660 134350946 -54928608 - L1MB7 LINE L1 -2 6182 5890 309 295 104 103 chr6 134350946 134351450 -54928104 + L2 LINE L2 2762 3271 -1 186 143 18 143 chr6 134351603 134351659 -54927895 + MIR SINE MIR 99 147 -115 2060 138 0 31 chr6 134351756 134352075 -54927479 + AluSg SINE Alu 1 309 -1 250 291 38 13 chr6 134352865 134352944 -54926610 - MIR3 SINE MIR -122 86 6 614 124 38 0 chr6 134353626 134353731 -54925823 + L1MA4 LINE L1 6178 6286 -14 572 256 34 34 chr6 134353901 134354139 -54925415 + Charlie2 DNA MER1_type 2622 2859 -3 2811 185 108 19 chr6 134354208 134354966 -54924588 - Charlie2a DNA MER1_type -237 2625 1800 1004 196 63 16 chr6 134354957 134355212 -54924342 - Charlie2a DNA MER1_type -1138 1724 1458 * 343 350 55 43 chr6 134356163 134356417 -54923137 + L3 LINE CR1 1319 1575 -2 330 87 0 0 chr6 134357109 134357155 -54922399 + (TG)n Simple_repeat Simple_repeat 2 47 0 1916 184 14 8 chr6 134358484 134358843 -54920711 + MLT1A1 LTR MaLR 5 365 0 268 338 125 6 chr6 134358961 134359121 -54920433 - MIR3 SINE MIR -9 199 21 205 393 96 11 chr6 134359370 134359548 -54920006 - MIR SINE MIR -50 212 20 1751 209 167 8 chr6 134359774 134360277 -54919277 - MER63 DNA MER1_type -3 1057 475 817 165 0 15 chr6 134360405 134360538 -54919016 + FLAM_C SINE Alu 1 131 -2 320 200 76 76 chr6 134360955 134361100 -54918454 + L1ME4a LINE L1 5950 6094 -27 239 263 0 25 chr6 134362409 134362489 -54917065 + CT-rich Low_complexity Low_complexity 2 79 0 262 123 35 0 chr6 134364507 134364564 -54914990 + GA-rich Low_complexity Low_complexity 2 60 0 1906 127 25 0 chr6 134364920 134365223 -54914331 + AluSx SINE Alu 1 310 0 26 0 0 0 chr6 134365454 134365480 -54914074 + AT_rich Low_complexity Low_complexity 1 26 0 294 29 0 0 chr6 134366406 134366441 -54913113 + (CA)n Simple_repeat Simple_repeat 2 36 0 1872 157 46 100 chr6 134366442 134366900 -54912654 + Tigger2a DNA MER2_type 2 434 0 1848 161 36 12 chr6 134366904 134367234 -54912320 - MLT2C1 LTR ERVL -59 338 1 642 349 56 20 chr6 134367491 134368057 -54911497 - ERVL LTR ERVL -201 5284 4715 3546 317 86 44 chr6 134368113 134368287 -54911267 - ERVL LTR ERVL -1067 4587 4422 1880 218 66 7 chr6 134368287 134368728 -54910826 - MLT1C LTR MaLR 0 467 1 3546 317 86 44 chr6 134368728 134368952 -54910602 - ERVL LTR ERVL -1232 4422 4209 1887 202 25 0 chr6 134368952 134369308 -54910246 + MLT1A1 LTR MaLR 1 365 0 3546 317 86 44 chr6 134369308 134369486 -54910068 - ERVL LTR ERVL -1445 4209 4040 2165 133 38 19 chr6 134369486 134369854 -54909700 + THE1C LTR MaLR 1 375 0 3546 317 86 44 chr6 134369854 134371701 -54907853 - ERVL LTR ERVL -1614 4040 2040 356 327 74 54 chr6 134371997 134372667 -54906887 - ERVL LTR ERVL -3972 1682 1031 748 242 161 57 chr6 134373487 134373941 -54905613 - LTR33 LTR ERVL -7 514 14 521 291 73 0 chr6 134375268 134375447 -54904107 + MIR SINE MIR 58 249 -13 364 291 35 50 chr6 134376600 134376741 -54902813 + MIR3 SINE MIR 5 143 -65 297 0 0 0 chr6 134377409 134377442 -54902112 + (CA)n Simple_repeat Simple_repeat 2 34 0 699 115 31 62 chr6 134377475 134377605 -54901949 - FRAM SINE Alu -9 167 42 209 208 0 0 chr6 134378471 134378519 -54901035 + T-rich Low_complexity Low_complexity 1 48 0 14301 194 69 17 chr6 134378528 134382643 -54896911 - L1PB3 LINE L1 -32 6838 2345 183 42 0 0 chr6 134382643 134382667 -54896887 + (TTG)n Simple_repeat Simple_repeat 1 24 0 14301 194 69 17 chr6 134382667 134385137 -54894417 - L1PB3 LINE L1 -4525 2345 6 536 181 0 0 chr6 134385154 134385237 -54894317 - Charlie3 DNA MER1_type -2624 86 4 * 741 219 178 53 chr6 134385237 134385468 -54894086 - MLT2B1 LTR ERVL -88 432 171 1079 181 130 63 chr6 134385893 134386163 -54893391 + Tigger7 DNA MER2_type 1 288 -2199 426 310 152 27 chr6 134386525 134387118 -54892436 - L1M4 LINE L1 -1116 5030 4364 403 294 119 31 chr6 134387396 134387682 -54891872 - L1M4 LINE L1 -2106 4040 3730 213 242 15 0 chr6 134387711 134387777 -54891777 + (TA)n Simple_repeat Simple_repeat 1 67 0 201 157 43 71 chr6 134388184 134388254 -54891300 + (CATTT)n Simple_repeat Simple_repeat 3 70 0 22 35 0 0 chr6 134388276 134388305 -54891249 + AT_rich Low_complexity Low_complexity 1 29 0 398 195 138 38 chr6 134388630 134388789 -54890765 + MER104 DNA Tc2 1 175 -5 2713 90 0 0 chr6 134389004 134389359 -54890195 + THE1A LTR MaLR 1 355 0 196 342 63 0 chr6 134389691 134389770 -54889784 - L2 LINE L2 -40 3232 3149 21 36 0 0 chr6 134389949 134389977 -54889577 + AT_rich Low_complexity Low_complexity 1 28 0 1304 315 76 28 chr6 134390115 134391006 -54888548 + L2 LINE L2 2383 3310 -3 217 289 53 26 chr6 134391711 134391787 -54887767 - L2 LINE L2 -47 3266 3189 257 344 76 69 chr6 134391831 134392093 -54887461 - L2 LINE L2 -42 3230 2967 318 26 0 0 chr6 134394309 134394348 -54885206 + (CA)n Simple_repeat Simple_repeat 1 39 0 297 0 0 0 chr6 134394878 134394911 -54884643 + (TG)n Simple_repeat Simple_repeat 1 33 0 2593 221 51 41 chr6 134397224 134397987 -54881567 - L1ME1 LINE L1 -19 6147 5377 231 206 0 32 chr6 134398027 134398090 -54881464 - L1MC4 LINE L1 -1340 6702 6642 * 979 196 31 0 chr6 134398069 134398298 -54881256 - L1ME1 LINE L1 -776 5370 5135 303 366 57 22 chr6 134398341 134398568 -54880986 + L2 LINE L2 2403 2637 -677 229 104 0 42 chr6 134399833 134399881 -54879673 + (TA)n Simple_repeat Simple_repeat 1 46 0 311 174 54 76 chr6 134399886 134399978 -54879576 + L1MC4 LINE L1 6614 6703 -1339 262 145 48 12 chr6 134399983 134400066 -54879488 + (TA)n Simple_repeat Simple_repeat 1 86 0 201 253 76 13 chr6 134400071 134400150 -54879404 - MIR SINE MIR -58 204 121 279 314 46 69 chr6 134400290 134400465 -54879089 - MER5A DNA MER1_type 0 189 19 384 352 0 0 chr6 134400631 134400756 -54878798 + MIR SINE MIR 38 162 -100 226 164 36 18 chr6 134402995 134403050 -54876504 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 629 231 8 0 chr6 134403051 134403172 -54876382 - FLAM_C SINE Alu -19 124 3 45 0 0 0 chr6 134403258 134403303 -54876251 + AT_rich Low_complexity Low_complexity 1 45 0 1527 149 20 0 chr6 134403303 134403551 -54876003 - L1PA16 LINE L1 -20 6146 5894 9876 37 3 0 chr6 134403551 134405519 -54874035 - L1PA5 LINE L1 0 6154 4183 2809 38 0 0 chr6 134405520 134405860 -54873694 + L1PA5 LINE L1 3850 4189 -1957 1787 169 3 7 chr6 134405845 134406152 -54873402 - L1PA16 LINE L1 -245 5921 5616 * 551 116 12 0 chr6 134406255 134406341 -54873213 - LTR12 LTR ERV1 -279 435 349 226 246 0 0 chr6 134406352 134406413 -54873141 - LTR30 LTR ERV1 -118 604 544 1317 87 0 26 chr6 134406413 134406608 -54872946 - pTR5 LTR ERV1 -413 2025 1836 824 210 73 44 chr6 134406614 134406862 -54872692 - pTR5 LTR ERV1 -1441 997 743 9901 38 5 0 chr6 134406862 134408800 -54870754 - L1PA5 LINE L1 -28 6126 4183 2809 38 0 0 chr6 134408801 134409141 -54870413 + L1PA5 LINE L1 3850 4189 -1957 * 10133 208 25 79 chr6 134409126 134412905 -54866649 - L1PA16 LINE L1 -245 6624 3205 252 143 0 0 chr6 134412905 134412947 -54866607 - MADE1 DNA Mariner -38 42 1 10133 208 25 79 chr6 134412947 134414087 -54865467 - L1PA16 LINE L1 -3664 3205 2005 23 24 0 24 chr6 134414087 134414108 -54865446 + AT_rich Low_complexity Low_complexity 1 21 -19 6769 58 12 0 chr6 134414108 134414774 -54864780 - L1PA7 LINE L1 -3 6151 5494 369 0 0 0 chr6 134414774 134414815 -54864739 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2275 75 0 7 chr6 134414815 134415096 -54864458 - AluY SINE Alu -30 281 3 6769 58 12 0 chr6 134415096 134415531 -54864023 - L1PA7 LINE L1 -659 5495 5059 23 24 0 24 chr6 134415531 134415550 -54864004 + AT_rich Low_complexity Low_complexity 21 40 0 11569 88 9 14 chr6 134415550 134417207 -54862347 + L1P LINE L1 2983 4631 -1515 731 256 76 49 chr6 134417210 134417726 -54861828 - L1PA16 LINE L1 -4836 2013 1427 1140 267 0 43 chr6 134418189 134418492 -54861062 - L1PA16 LINE L1 -6116 733 444 290 331 16 33 chr6 134418515 134418636 -54860918 - L1M2 LINE L1 -6065 784 666 1230 303 58 15 chr6 134419190 134419669 -54859885 - L1M2 LINE L1 -6348 501 2 267 309 66 116 chr6 134419840 134420099 -54859455 - MIR SINE MIR -15 247 2 22 0 0 0 chr6 134420505 134420527 -54859027 + AT_rich Low_complexity Low_complexity 1 22 0 1904 106 22 0 chr6 134420627 134420901 -54858653 - L1PA11 LINE L1 0 6174 5895 206 355 36 36 chr6 134422199 134422309 -54857245 + MIR SINE MIR 1 110 -152 38 39 0 0 chr6 134422438 134422490 -54857064 + AT_rich Low_complexity Low_complexity 1 52 0 252 356 98 36 chr6 134422912 134423106 -54856448 - L2 LINE L2 -186 3086 2881 47 44 0 0 chr6 134423106 134423174 -54856380 + AT_rich Low_complexity Low_complexity 1 68 0 3175 125 34 2 chr6 134424884 134425381 -54854173 - LTR10D LTR ERV1 0 513 1 21366 169 12 10 chr6 134425401 134429064 -54850490 - HERVI LTR ERV1 -16 7769 4099 5463 222 17 3 chr6 134429148 134430206 -54849348 - HERVI LTR ERV1 -3873 3912 2840 1348 290 29 44 chr6 134430351 134430902 -54848652 - HERVI LTR ERV1 -6647 1138 596 959 264 44 66 chr6 134430936 134431568 -54847986 - HERVI LTR ERV1 -7088 697 10 3421 113 18 4 chr6 134431576 134432082 -54847472 - LTR10D LTR ERV1 0 513 1 22 0 0 0 chr6 134433931 134433953 -54845601 + AT_rich Low_complexity Low_complexity 1 22 0 338 304 137 6 chr6 134434361 134434522 -54845032 - MIR SINE MIR -3 259 78 1329 272 52 64 chr6 134434723 134435580 -54843974 - L2 LINE L2 -66 3247 2356 2699 259 99 43 chr6 134436184 134438459 -54841095 - L1ME3 LINE L1 -254 5908 3507 25 31 0 0 chr6 134438765 134438797 -54840757 + AT_rich Low_complexity Low_complexity 1 32 0 3688 127 11 33 chr6 134439041 134439669 -54839885 + L1PA15 LINE L1 5548 6161 -4 281 81 0 0 chr6 134439669 134439706 -54839848 - L1P4 LINE L1 -690 5473 5437 240 179 0 0 chr6 134439844 134439883 -54839671 + tRNA-Met-e tRNA tRNA 6 44 -31 198 0 0 0 chr6 134440474 134440496 -54839058 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 2172 97 3 13 chr6 134441822 134442122 -54837432 - AluSg SINE Alu -13 297 1 1902 125 46 35 chr6 134442212 134442580 -54836974 - THE1C LTR MaLR 0 375 4 271 151 23 116 chr6 134442836 134442922 -54836632 - MLT1K LTR MaLR -62 526 449 1994 103 0 0 chr6 134442948 134443211 -54836343 - AluSx SINE Alu -15 297 35 1091 222 21 103 chr6 134443261 134443640 -54835914 + MLT1A1 LTR MaLR 11 358 -7 26 50 0 0 chr6 134443844 134443884 -54835670 + AT_rich Low_complexity Low_complexity 1 40 0 1572 141 4 0 chr6 134444686 134444920 -54834634 + AluSx SINE Alu 1 235 -77 234 0 0 0 chr6 134445439 134445465 -54834089 + (TG)n Simple_repeat Simple_repeat 2 27 0 4891 88 25 12 chr6 134447688 134448367 -54831187 + LTR12 LTR ERV1 1 688 0 1917 124 0 7 chr6 134449107 134449413 -54830141 + AluSg SINE Alu 1 304 0 259 389 83 19 chr6 134450704 134450861 -54828693 + L2 LINE L2 3096 3262 -10 593 271 21 0 chr6 134450949 134451093 -54828461 - MIR SINE MIR -26 236 90 210 336 56 19 chr6 134451170 134451277 -54828277 - MIR SINE MIR -77 131 21 197 135 81 0 chr6 134451271 134451308 -54828246 + MIR SINE MIR 123 162 -100 * 4090 149 31 60 chr6 134451698 134452515 -54827039 - MER54B LTR ERVL 0 793 1 265 255 48 37 chr6 134453859 134454071 -54825483 + L1ME4a LINE L1 5755 5969 -152 213 339 152 9 chr6 134454312 134454424 -54825130 - MIR3 SINE MIR -34 174 47 1794 219 32 11 chr6 134455986 134456428 -54823126 - L1 LINE L1 -1132 5014 4564 856 195 23 28 chr6 134456425 134456640 -54822914 + L1 LINE L1 5042 5255 -891 * 3802 145 37 8 chr6 134456641 134457297 -54822257 + L1PA16 LINE L1 5478 6152 -14 22 56 0 0 chr6 134458064 134458100 -54821454 + AT_rich Low_complexity Low_complexity 1 36 0 564 84 0 0 chr6 134458154 134458237 -54821317 + (TTCC)n Simple_repeat Simple_repeat 4 86 0 1049 81 35 6 chr6 134458248 134458421 -54821133 + CT-rich Low_complexity Low_complexity 1 178 0 297 0 0 0 chr6 134458427 134458460 -54821094 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 8487 187 18 2 chr6 134458560 134460243 -54819311 - L1 LINE L1 -1223 4923 3213 217 137 21 105 chr6 134460914 134461009 -54818545 + T-rich Low_complexity Low_complexity 3 89 0 263 307 67 0 chr6 134461352 134461427 -54818127 - MLT1K LTR MaLR -352 236 157 6023 193 12 11 chr6 134461690 134462807 -54816747 + L1M4 LINE L1 572 1689 -5876 327 235 12 25 chr6 134463093 134463174 -54816380 - ERVL LTR ERVL -4808 956 877 192 40 0 0 chr6 134463222 134463247 -54816307 + (T)n Simple_repeat Simple_repeat 1 25 0 251 252 146 32 chr6 134463947 134464070 -54815484 - MLT2E LTR ERVL -67 561 425 23 0 0 0 chr6 134465143 134465166 -54814388 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr6 134465186 134465213 -54814341 + AT_rich Low_complexity Low_complexity 1 27 0 3296 106 45 4 chr6 134466118 134466609 -54812945 + MER9 LTR ERVK 1 511 0 1081 259 83 14 chr6 134467195 134467686 -54811868 + L1M4 LINE L1 1947 2471 -4992 255 306 0 0 chr6 134468007 134468079 -54811475 - L1M4c LINE L1 -5109 1275 1204 186 43 0 0 chr6 134468126 134468149 -54811405 + (GA)n Simple_repeat Simple_repeat 2 24 0 671 254 127 31 chr6 134468160 134468420 -54811134 + L1M4 LINE L1 2498 2782 -4785 397 202 50 20 chr6 134468424 134468523 -54811031 + L1M4 LINE L1 5565 5666 -518 1016 164 28 23 chr6 134468623 134468837 -54810717 + THE1C LTR MaLR 159 373 -2 21 0 0 0 chr6 134469074 134469095 -54810459 + AT_rich Low_complexity Low_complexity 1 21 0 12885 86 4 9 chr6 134469882 134471701 -54807853 - L1P LINE L1 -3354 2792 984 541 269 21 0 chr6 134471880 134472025 -54807529 - L1MC4 LINE L1 -388 7654 7507 1866 78 8 4 chr6 134472039 134472294 -54807260 + L1PA10 LINE L1 5902 6157 -11 2415 69 0 3 chr6 134472329 134472634 -54806920 + AluY SINE Alu 1 304 -7 23 0 0 0 chr6 134472976 134472999 -54806555 + AT_rich Low_complexity Low_complexity 1 23 0 1597 164 19 26 chr6 134473323 134473634 -54805920 + AluJo SINE Alu 1 309 -3 185 222 56 37 chr6 134473720 134473774 -54805780 + MIR SINE MIR 154 208 -54 339 227 38 45 chr6 134474187 134474400 -54805154 + Charlie7 DNA MER1_type 47 2607 -5 468 299 67 48 chr6 134475401 134475715 -54803839 - L2 LINE L2 -2 3311 2992 2003 139 49 25 chr6 134476941 134477307 -54802247 + THE1C LTR MaLR 1 375 0 4583 147 59 22 chr6 134479262 134480133 -54799421 + MER4D LTR ERV1 1 903 0 1088 275 46 64 chr6 134481329 134482104 -54797450 + L1ME LINE L1 499 1299 -4962 1822 173 3 0 chr6 134482104 134482399 -54797155 + AluSx SINE Alu 1 296 -16 1088 275 46 64 chr6 134482399 134482739 -54796815 + L1ME LINE L1 1299 1644 -4617 230 167 24 0 chr6 134482741 134482783 -54796771 + L1ME1 LINE L1 5887 5929 -249 554 253 129 10 chr6 134482884 134483078 -54796476 + L1ME1 LINE L1 5931 6147 -19 216 163 41 0 chr6 134483153 134483202 -54796352 + (TA)n Simple_repeat Simple_repeat 1 51 0 786 313 20 4 chr6 134483381 134483630 -54795924 + MIR SINE MIR 7 259 -3 21 0 0 0 chr6 134483712 134483733 -54795821 + AT_rich Low_complexity Low_complexity 1 21 0 378 91 0 0 chr6 134483912 134483967 -54795587 + (TC)n Simple_repeat Simple_repeat 2 56 0 23 0 0 0 chr6 134484352 134484375 -54795179 + AT_rich Low_complexity Low_complexity 1 23 0 221 350 0 14 chr6 134484722 134484865 -54794689 + GA-rich Low_complexity Low_complexity 2 142 0 227 344 87 50 chr6 134488410 134488628 -54790926 + L2 LINE L2 2553 2778 -536 316 277 80 9 chr6 134488643 134488755 -54790799 + MER57B LTR ERV1 1 120 -314 1864 174 3 7 chr6 134491021 134491331 -54788223 + MLT2B2 LTR ERVL 1 309 -206 185 246 62 15 chr6 134492360 134492425 -54787129 - L2 LINE L2 0 3313 3246 400 298 83 22 chr6 134492940 134493121 -54786433 - MIR SINE MIR 0 262 71 621 303 67 15 chr6 134493513 134493708 -54785846 + MIR3 SINE MIR 4 208 0 218 362 9 60 chr6 134496394 134496510 -54783044 + L2 LINE L2 1699 1808 -1506 765 200 6 0 chr6 134496530 134496686 -54782868 - L1ME2 LINE L1 -4 6158 5997 1984 282 59 3 chr6 134496821 134497446 -54782108 - L1MC4 LINE L1 -145 7897 7238 2257 146 83 8 chr6 134497453 134497851 -54781703 - MSTA LTR MaLR 0 428 1 2287 235 61 3 chr6 134497856 134498444 -54781110 - L1MC4 LINE L1 -960 7082 6461 1710 218 62 6 chr6 134498517 134498870 -54780684 + MSTD LTR MaLR 24 396 0 1943 151 53 20 chr6 134499456 134499814 -54779740 + MLT1B LTR MaLR 21 390 0 286 340 76 21 chr6 134499858 134500002 -54779552 + L2 LINE L2 1849 2000 -1314 326 356 92 22 chr6 134500702 134501019 -54778535 + L2 LINE L2 2301 2639 -675 2181 115 0 20 chr6 134503169 134503473 -54776081 - AluSq SINE Alu -15 298 1 1092 204 61 111 chr6 134504199 134504577 -54774977 + MLT1A1 LTR MaLR 1 359 -6 7378 212 50 33 chr6 134504583 134506289 -54773265 + MLT1A1-int LTR MaLR 1 1735 0 263 191 63 0 chr6 134506291 134506345 -54773209 + MLT1A1 LTR MaLR 3 60 -336 394 145 159 0 chr6 134506345 134506414 -54773140 + MADE1 DNA Mariner 1 80 0 * 1054 216 15 108 chr6 134506414 134506747 -54772807 + MLT1A1 LTR MaLR 65 365 0 2101 139 3 0 chr6 134506831 134507159 -54772395 + AluSq SINE Alu 1 313 0 225 264 9 28 chr6 134508215 134508321 -54771233 + GA-rich Low_complexity Low_complexity 1 104 0 2514 77 0 0 chr6 134508460 134508771 -54770783 - AluY SINE Alu 0 311 1 862 269 5 0 chr6 134508921 134509129 -54770425 - MLT1B LTR MaLR 0 390 182 289 89 0 36 chr6 134509153 134509209 -54770345 + (TCC)n Simple_repeat Simple_repeat 2 55 0 477 190 152 51 chr6 134509209 134509367 -54770187 - MLT1A2 LTR MaLR -216 174 1 270 0 0 0 chr6 134510835 134510865 -54768689 + (TG)n Simple_repeat Simple_repeat 2 31 0 1418 144 17 81 chr6 134510867 134511165 -54768389 - AluJo SINE Alu -29 283 5 25 51 0 0 chr6 134512671 134512710 -54766844 + AT_rich Low_complexity Low_complexity 1 39 0 297 289 50 25 chr6 134513513 134513634 -54765920 + MLT1H LTR MaLR 424 547 -2 1932 123 47 0 chr6 134514266 134514543 -54765011 + AluSx SINE Alu 1 290 -22 22 35 0 0 chr6 134515104 134515133 -54764421 + AT_rich Low_complexity Low_complexity 1 29 0 4668 155 23 1 chr6 134516869 134517658 -54761896 - L1PA16 LINE L1 -20 6146 5341 214 350 10 10 chr6 134518179 134518279 -54761275 + L3 LINE CR1 241 340 -1237 655 286 241 28 chr6 134518579 134519213 -54760341 + L3 LINE CR1 798 1566 -11 257 326 86 99 chr6 134520247 134520652 -54758902 + L2 LINE L2 2869 3268 -4 342 312 201 16 chr6 134520741 134520930 -54758624 + L1MC4 LINE L1 7809 8032 -10 180 219 0 0 chr6 134521086 134521127 -54758427 + (TG)n Simple_repeat Simple_repeat 1 41 0 7264 101 8 20 chr6 134521257 134522341 -54757213 + MER11C LTR ERVK 1 1071 0 312 237 186 0 chr6 134522737 134522855 -54756699 + Charlie8 DNA MER1_type 382 521 -1896 535 280 72 59 chr6 134523000 134523236 -54756318 - MIR SINE MIR -19 243 5 1658 109 5 0 chr6 134523292 134523513 -54756041 - AluSc SINE Alu -87 222 1 9554 122 21 4 chr6 134524898 134526349 -54753205 + Tigger1 DNA MER2_type 2 1477 -941 1258 79 6 0 chr6 134526350 134526514 -54753040 + AluY SINE Alu 144 308 -3 1356 132 18 18 chr6 134526516 134526743 -54752811 + Tigger1 DNA MER2_type 1473 1699 -719 4518 138 15 3 chr6 134526784 134527514 -54752040 + Tigger1 DNA MER2_type 1680 2418 0 215 303 90 48 chr6 134528182 134528327 -54751227 + MIR SINE MIR 2 152 -110 2404 74 0 13 chr6 134529115 134529424 -54750130 - AluY SINE Alu -6 305 1 248 373 55 0 chr6 134530470 134530580 -54748974 - L2 LINE L2 -73 3199 3084 337 242 0 0 chr6 134530761 134530827 -54748727 + L2 LINE L2 3203 3268 -4 284 385 165 0 chr6 134531261 134531479 -54748075 - MIR SINE MIR -3 259 6 207 0 0 0 chr6 134532406 134532429 -54747125 + (T)n Simple_repeat Simple_repeat 1 23 0 338 311 25 25 chr6 134532825 134532839 -54746715 - L2 LINE L2 0 3272 3259 183 42 0 0 chr6 134532839 134532863 -54746691 + (CAGT)n Simple_repeat Simple_repeat 3 26 0 338 311 25 25 chr6 134532863 134532967 -54746587 - L2 LINE L2 -12 3260 3154 313 313 18 36 chr6 134532972 134533084 -54746470 + MIR3 SINE MIR 66 175 -33 274 396 9 0 chr6 134533480 134533586 -54745968 - MIR SINE MIR -153 109 3 255 293 13 0 chr6 134533628 134533703 -54745851 - MER81 DNA DNA -2 112 37 288 128 0 0 chr6 134533734 134533781 -54745773 + MADE1 DNA Mariner 1 47 -33 23 0 0 0 chr6 134534133 134534156 -54745398 + AT_rich Low_complexity Low_complexity 1 23 0 1063 152 0 0 chr6 134534405 134534570 -54744984 - L1PA16 LINE L1 -11 6155 5991 8100 228 49 19 chr6 134534582 134538277 -54741277 - L1 LINE L1 -1989 4045 250 320 295 38 0 chr6 134539132 134539237 -54740317 - L1 LINE L1 -5846 109 1 291 192 27 14 chr6 134539242 134539315 -54740239 + L2 LINE L2 2153 2226 -1088 4553 79 21 12 chr6 134539315 134540432 -54739122 - MER11A LTR ERVK 0 1266 1 1555 281 132 33 chr6 134540432 134541282 -54738272 + L2 LINE L2 2221 3136 -177 7189 248 70 40 chr6 134541416 134543647 -54735907 - MER4B-int LTR ERV1 -58 4133 1838 5111 147 38 7 chr6 134543649 134544576 -54734978 - Tigger3b DNA MER2_type 0 1231 276 546 238 0 0 chr6 134544577 134544678 -54734876 - Tigger3b DNA MER2_type -1130 101 1 661 212 0 106 chr6 134544680 134544859 -54734695 - MER4B-int LTR ERV1 -2356 1835 1676 265 277 60 0 chr6 134544987 134545070 -54734484 - MER4B-int LTR ERV1 -2553 1638 1551 273 198 198 0 chr6 134545130 134545216 -54734338 - MER4B-int LTR ERV1 -2408 4350 4248 749 261 11 71 chr6 134545236 134545519 -54734035 - MER4B-int LTR ERV1 -2812 1379 1114 809 176 39 22 chr6 134546319 134546501 -54733053 - L1MA9 LINE L1 0 6312 6128 228 325 78 13 chr6 134547026 134547103 -54732451 + MER5A DNA MER1_type 7 88 -101 261 228 109 0 chr6 134547363 134547464 -54732090 - HsTC2 DNA Tc2 -48 1850 1739 975 206 61 58 chr6 134547480 134547791 -54731763 - HsTC2 DNA Tc2 -1061 837 526 2315 105 0 0 chr6 134547862 134548166 -54731388 - AluSg SINE Alu 0 310 7 1162 260 14 11 chr6 134548189 134548466 -54731088 + MLT1H LTR MaLR 29 306 -243 769 236 103 30 chr6 134548469 134548740 -54730814 - HsTC2 DNA Tc2 -1528 370 80 32 57 0 0 chr6 134549037 134549090 -54730464 + AT_rich Low_complexity Low_complexity 1 53 0 24 0 0 0 chr6 134549176 134549200 -54730354 + AT_rich Low_complexity Low_complexity 1 24 0 288 328 0 0 chr6 134549751 134549885 -54729669 - L1ME LINE L1 -312 5809 5676 233 252 126 0 chr6 134550157 134550276 -54729278 - L1ME LINE L1 -747 5399 5266 1517 172 4 4 chr6 134550917 134551196 -54728358 - L1MB5 LINE L1 -243 5931 5653 23 33 0 0 chr6 134551339 134551369 -54728185 + AT_rich Low_complexity Low_complexity 1 30 0 2053 107 0 26 chr6 134551695 134552005 -54727549 - AluSc SINE Alu -7 302 1 9371 203 94 29 chr6 134552100 134552535 -54727019 - L1P4 LINE L1 -413 6456 6051 234 0 0 0 chr6 134552535 134552561 -54726993 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9371 203 94 29 chr6 134552561 134556512 -54723042 - L1P4 LINE L1 -818 6051 1664 1229 197 36 51 chr6 134556513 134556787 -54722767 - AluJb SINE Alu -31 281 12 3993 186 50 0 chr6 134556790 134557935 -54721619 - L1P4 LINE L1 -5189 1660 5 2171 101 7 7 chr6 134558074 134558382 -54721172 - AluSc SINE Alu -1 308 1 301 271 83 58 chr6 134558433 134558795 -54720759 - HAL1 LINE L1 -918 1589 1219 670 308 34 50 chr6 134558803 134559147 -54720407 + Charlie8 DNA MER1_type 2 326 -2091 249 33 0 0 chr6 134559297 134559327 -54720227 + (CA)n Simple_repeat Simple_repeat 2 31 0 1523 271 113 22 chr6 134559351 134559699 -54719855 + Charlie8 DNA MER1_type 567 882 -1535 2063 113 3 0 chr6 134559699 134560031 -54719523 - AluSg SINE Alu 0 333 1 1523 271 113 22 chr6 134560031 134560327 -54719227 + Charlie8 DNA MER1_type 882 1271 -1146 581 288 60 102 chr6 134560367 134560955 -54718599 + L2 LINE L2 2764 3313 0 602 263 26 57 chr6 134561058 134561286 -54718268 + Charlie8 DNA MER1_type 1408 1628 -789 6805 137 53 5 chr6 134561294 134562459 -54717095 - Tigger3b DNA MER2_type 0 1231 11 732 280 186 13 chr6 134562461 134562858 -54716696 + Charlie8 DNA MER1_type 1631 2096 -321 189 0 0 0 chr6 134563069 134563090 -54716464 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 201 139 47 0 chr6 134563274 134563317 -54716237 + T-rich Low_complexity Low_complexity 2 46 0 300 27 0 0 chr6 134564117 134564154 -54715400 + (CA)n Simple_repeat Simple_repeat 2 38 0 1661 52 0 0 chr6 134564205 134564415 -54715139 - L1PA5 LINE L1 0 6154 5945 31 0 0 0 chr6 134565490 134565521 -54714033 + AT_rich Low_complexity Low_complexity 1 31 0 687 178 92 12 chr6 134565630 134565793 -54713761 - MER96B DNA MER1_type? -239 178 3 1544 178 30 78 chr6 134566154 134566525 -54713029 - MLT1A2 LTR MaLR -4 370 18 2645 7 0 0 chr6 134566878 134567168 -54712386 - AluYa5 SINE Alu -9 302 13 546 292 72 25 chr6 134567213 134567449 -54712105 + L1ME3A LINE L1 5913 6159 -11 737 329 83 43 chr6 134567516 134568142 -54711412 + HAL1b LINE L1 126 776 -572 483 110 0 0 chr6 134569087 134569160 -54710394 + L1PA15 LINE L1 6081 6153 -12 3067 152 4 87 chr6 134569173 134569850 -54709704 + L1MA2 LINE L1 3775 4395 -1751 5002 122 28 1 chr6 134569850 134570633 -54708921 + L1MA2 LINE L1 5498 6304 0 211 350 43 43 chr6 134570792 134570955 -54708599 + L2 LINE L2 2289 2451 -863 686 248 183 0 chr6 134571065 134571339 -54708215 + MER5C DNA MER1_type 1 324 0 24 67 0 0 chr6 134571586 134571631 -54707923 + AT_rich Low_complexity Low_complexity 1 45 0 26 74 0 0 chr6 134571712 134571766 -54707788 + AT_rich Low_complexity Low_complexity 1 54 0 232 328 25 17 chr6 134571814 134571933 -54707621 + MLT1J LTR MaLR 99 218 -293 295 297 17 0 chr6 134571969 134572087 -54707467 + L1MCa LINE L1 1516 1635 -4791 663 312 85 32 chr6 134572863 134573529 -54706025 + L1ME LINE L1 671 1279 -4834 367 287 36 24 chr6 134573669 134573836 -54705718 + L1ME LINE L1 1639 1807 -4589 452 296 65 63 chr6 134573850 134574248 -54705306 + L1ME LINE L1 1869 2267 -4129 257 308 96 6 chr6 134574275 134574431 -54705123 + L1ME LINE L1 3781 3950 -2265 483 247 92 51 chr6 134574464 134574756 -54704798 + L1ME3A LINE L1 5862 6165 -5 577 263 73 97 chr6 134575498 134575597 -54703957 + L1ME3A LINE L1 5805 5905 -265 2054 99 14 10 chr6 134575597 134575890 -54703664 - AluSx SINE Alu -10 302 9 577 263 73 97 chr6 134575890 134576162 -54703392 + L1ME3A LINE L1 5905 6167 -3 625 226 124 14 chr6 134576176 134576459 -54703095 + Charlie2 DNA MER1_type 2361 2674 -188 373 356 85 16 chr6 134576680 134576986 -54702568 - L1M4 LINE L1 -1301 4845 4519 829 270 49 61 chr6 134576988 134577417 -54702137 - HAL1 LINE L1 -798 1709 1286 2164 135 27 43 chr6 134577464 134577625 -54701929 + THE1B LTR MaLR 1 163 -201 2213 88 0 13 chr6 134577625 134577931 -54701623 - AluY SINE Alu -7 304 3 2164 135 27 43 chr6 134577931 134578139 -54701415 + THE1B LTR MaLR 163 364 0 10292 217 40 16 chr6 134578216 134579020 -54700534 - L1PB4 LINE L1 0 6859 6075 2262 84 0 10 chr6 134579020 134579317 -54700237 - AluSc SINE Alu -12 297 4 10292 217 40 16 chr6 134579317 134579443 -54700111 - L1PB4 LINE L1 -784 6075 5953 1998 146 84 27 chr6 134579443 134579846 -54699708 + MSTB LTR MaLR 1 426 0 10292 217 40 16 chr6 134579846 134580240 -54699314 - L1PB4 LINE L1 -906 5953 5570 2037 137 24 45 chr6 134580240 134580621 -54698933 - THE1C LTR MaLR 0 375 3 10292 217 40 16 chr6 134580621 134583009 -54696545 - L1PB4 LINE L1 -1289 5570 3052 294 104 42 0 chr6 134583027 134583075 -54696479 - L1PB4 LINE L1 -4217 2632 2583 306 287 40 10 chr6 134583080 134583181 -54696373 - L1PB4 LINE L1 -5390 1460 1357 245 326 0 0 chr6 134583187 134583279 -54696275 - L1PB4 LINE L1 -5285 1564 1473 406 379 69 47 chr6 134584004 134584511 -54695043 - L1PB4 LINE L1 -6322 528 11 645 324 68 36 chr6 134584582 134585024 -54694530 - HAL1 LINE L1 -1471 1036 581 2246 208 70 11 chr6 134585227 134585755 -54693799 - MER89 LTR ERV1 0 559 1 609 242 122 78 chr6 134585890 134586274 -54693280 - L1MC/D LINE L1 -2092 5716 5316 342 0 0 0 chr6 134586403 134586441 -54693113 + (TG)n Simple_repeat Simple_repeat 2 39 0 277 278 109 35 chr6 134586448 134586678 -54692876 - L1MC/D LINE L1 -1007 5139 4893 600 351 83 17 chr6 134586784 134587359 -54692195 - L1MC/D LINE L1 -1424 4722 4110 368 250 73 0 chr6 134587620 134587744 -54691810 - L1MA9 LINE L1 0 6312 6180 24 0 0 0 chr6 134587879 134587903 -54691651 + AT_rich Low_complexity Low_complexity 1 24 0 204 333 206 0 chr6 134588196 134588361 -54691193 + MIR SINE MIR 18 216 -46 2246 117 0 0 chr6 134589070 134589378 -54690176 + AluSc SINE Alu 1 308 -1 235 197 33 49 chr6 134589395 134589456 -54690098 + MLT1L LTR MaLR 14 73 -542 3080 267 39 26 chr6 134589533 134590527 -54689027 + L1MCb LINE L1 34 1040 -5005 * 7302 188 145 50 chr6 134590515 134592036 -54687518 + L1MC3 LINE L1 5500 7345 -440 237 275 25 12 chr6 134592036 134592116 -54687438 + MLT1F1 LTR MaLR 27 107 -460 7302 188 145 50 chr6 134592116 134592596 -54686958 + L1MC3 LINE L1 7345 7778 -7 443 322 32 29 chr6 134594003 134594455 -54685099 - L1ME LINE L1 -457 5713 5257 288 54 0 0 chr6 134594497 134594534 -54685020 + L1PA8 LINE L1 6125 6161 -11 402 314 75 20 chr6 134594949 134595401 -54684153 - L1ME LINE L1 -1642 4504 4028 512 365 6 0 chr6 134596266 134596447 -54683107 + ERVL LTR ERVL 409 590 -5174 1875 146 21 24 chr6 134597135 134597511 -54682043 + THE1C LTR MaLR 1 375 0 225 233 27 0 chr6 134598986 134599059 -54680495 + (TA)n Simple_repeat Simple_repeat 1 75 0 256 350 63 63 chr6 134600380 134600603 -54678951 - L2 LINE L2 -20 3252 3030 556 262 22 33 chr6 134601069 134601252 -54678302 - L1ME3 LINE L1 -42 6120 5940 1047 193 38 15 chr6 134601253 134601518 -54678036 - L1MA4 LINE L1 -2 6298 6028 2373 92 0 0 chr6 134603026 134603331 -54676223 + AluSq SINE Alu 1 305 -8 2000 177 53 31 chr6 134603606 134604148 -54675406 - MLT2A2 LTR ERVL 0 554 1 247 297 54 0 chr6 134604363 134604437 -54675117 - L2 LINE L2 -37 3276 3199 252 86 0 0 chr6 134604446 134604481 -54675073 + (TA)n Simple_repeat Simple_repeat 1 35 0 1241 73 0 0 chr6 134605539 134605704 -54673850 + L1PA5 LINE L1 5989 6153 -1 21 36 0 0 chr6 134607179 134607207 -54672347 + AT_rich Low_complexity Low_complexity 1 28 0 1124 228 36 4 chr6 134608625 134608875 -54670679 - MLT1D LTR MaLR -2 503 246 376 173 73 27 chr6 134608906 134609016 -54670538 - L1MB8 LINE L1 0 6178 6064 4983 96 30 17 chr6 134609033 134609813 -54669741 - L1MA3 LINE L1 0 6305 5516 2070 188 84 2 chr6 134609813 134610323 -54669231 - L1 LINE L1 -2721 4844 4293 1169 209 5 0 chr6 134610321 134610532 -54669022 - L1 LINE L1 -6255 1310 1099 * 566 154 39 0 chr6 134610529 134610633 -54668921 - L1 LINE L1 -7432 133 26 * 442 184 0 132 chr6 134610633 134610840 -54668714 - MLT1E2 LTR MaLR -270 235 55 2155 149 61 17 chr6 134611240 134611610 -54667944 + MSTA LTR MaLR 1 392 -36 1879 122 35 10 chr6 134611610 134611898 -54667656 - AluSq SINE Alu -18 295 1 2155 149 61 17 chr6 134611898 134611937 -54667617 + MSTA LTR MaLR 392 428 0 1052 247 38 79 chr6 134612346 134612739 -54666815 + MLT1E3 LTR MaLR 128 504 -120 230 214 48 24 chr6 134613175 134613259 -54666295 + L1MC4 LINE L1 6617 6702 -1340 * 234 116 47 0 chr6 134613232 134613275 -54666279 - L1MC4 LINE L1 -1339 6703 6659 315 161 0 0 chr6 134613275 134613331 -54666223 + (CA)n Simple_repeat Simple_repeat 1 56 0 6169 81 17 4 chr6 134614563 134615530 -54664024 - L1PA10 LINE L1 -10 6158 5164 4898 138 25 3 chr6 134615530 134616388 -54663166 + L1PA10 LINE L1 4307 5182 -964 230 157 0 20 chr6 134616470 134616509 -54663045 + (TA)n Simple_repeat Simple_repeat 2 41 -10 1637 172 157 5 chr6 134616509 134616886 -54662668 - Tigger2a DNA MER2_type 0 434 1 230 157 0 20 chr6 134616886 134616897 -54662657 + (TA)n Simple_repeat Simple_repeat 41 51 0 226 224 95 86 chr6 134616927 134617043 -54662511 - HAL1 LINE L1 -19 2488 2372 234 258 70 23 chr6 134617175 134617303 -54662251 - HAL1 LINE L1 -299 2208 2075 11846 188 59 47 chr6 134617323 134619942 -54659612 - L1MA8 LINE L1 -12 7698 5113 2020 141 14 20 chr6 134619942 134620297 -54659257 + THE1A LTR MaLR 3 355 0 10787 113 13 4 chr6 134620297 134621862 -54657692 + THE1A-int LTR MaLR 1 1580 0 1955 157 14 6 chr6 134621864 134622214 -54657340 + THE1A LTR MaLR 3 355 0 11846 188 59 47 chr6 134622214 134622571 -54656983 - L1MA8 LINE L1 -2597 5113 4762 7385 34 16 0 chr6 134622571 134623637 -54655917 - L1PA5 LINE L1 -8 6146 5077 11846 188 59 47 chr6 134623637 134625351 -54654203 - L1MA8 LINE L1 -2948 4762 2928 6442 126 38 3 chr6 134625352 134626749 -54652805 + L1MA1 LINE L1 4854 6296 -6 364 295 23 0 chr6 134626800 134626929 -54652625 + L1ME2 LINE L1 2598 2729 -3417 983 245 29 37 chr6 134627124 134627369 -54652185 + MLT1-int LTR MaLR 975 1217 -154 274 211 0 0 chr6 134627379 134627436 -54652118 + MLT1D LTR MaLR 440 496 -9 2601 263 102 48 chr6 134627447 134629158 -54650396 + L1ME2 LINE L1 2801 4603 -1543 2149 159 27 5 chr6 134629194 134629565 -54649989 - L1PA16 LINE L1 -11 6155 5777 272 189 9 57 chr6 134629566 134629672 -54649882 + (TA)n Simple_repeat Simple_repeat 1 101 0 2122 136 91 95 chr6 134629673 134630018 -54649536 - L1PA16 LINE L1 -378 5788 5444 2351 56 7 13 chr6 134630018 134630323 -54649231 - AluY SINE Alu -8 303 1 2122 136 91 95 chr6 134630323 134630514 -54649040 - L1PA16 LINE L1 -722 5444 5254 1126 197 30 0 chr6 134630519 134630753 -54648801 + L1 LINE L1 3993 4233 -1913 2537 256 85 18 chr6 134630854 134632115 -54647439 + L1ME2 LINE L1 4814 6154 -10 552 258 55 31 chr6 134632423 134632710 -54646844 - L1ME2 LINE L1 -115 6049 5711 193 238 24 0 chr6 134632731 134632773 -54646781 - MER5B DNA MER1_type -135 43 1 701 264 119 34 chr6 134633573 134633642 -54645912 + MER57A LTR ERV1 1 63 -340 1870 161 27 14 chr6 134633642 134634009 -54645545 - THE1C LTR MaLR 0 375 4 701 264 119 34 chr6 134634009 134634313 -54645241 + MER57A LTR ERV1 63 397 -6 333 333 31 49 chr6 134634942 134635266 -54644288 + L1MC/D LINE L1 5292 5609 -2199 204 339 91 0 chr6 134636393 134636514 -54643040 - MIR SINE MIR -56 206 75 613 281 92 13 chr6 134637106 134637344 -54642210 - MIR SINE MIR -3 259 3 195 129 0 0 chr6 134637496 134637527 -54642027 + (A)n Simple_repeat Simple_repeat 1 31 0 220 368 0 0 chr6 134637722 134637809 -54641745 + L2 LINE L2 2996 3082 -190 336 208 179 9 chr6 134638080 134638186 -54641368 + MIR SINE MIR 71 194 -68 305 309 49 24 chr6 134639303 134639426 -54640128 + L2 LINE L2 3181 3306 -7 252 0 0 0 chr6 134640033 134640061 -54639493 + (A)n Simple_repeat Simple_repeat 1 28 0 193 347 91 8 chr6 134640182 134640303 -54639251 - L2 LINE L2 -252 3020 2890 28 29 0 0 chr6 134640625 134640660 -54638894 + AT_rich Low_complexity Low_complexity 1 35 0 250 256 22 22 chr6 134643744 134643834 -54635720 - L1MC/D LINE L1 -1976 5832 5743 1954 131 3 17 chr6 134643862 134644159 -54635395 + AluSq SINE Alu 3 295 -18 359 359 43 9 chr6 134644345 134644647 -54634907 - L1MC/D LINE L1 -749 5397 5189 31 44 0 0 chr6 134646110 134646155 -54633399 + AT_rich Low_complexity Low_complexity 1 45 0 3200 209 35 15 chr6 134646156 134646880 -54632674 - L1MB5 LINE L1 -9 6165 5428 542 227 8 0 chr6 134646944 134647063 -54632491 - L1MB5 LINE L1 -258 5916 5797 * 1445 158 55 0 chr6 134647053 134647325 -54632229 + L1MA5 LINE L1 5798 6084 -216 278 282 147 29 chr6 134647672 134647842 -54631712 - L2 LINE L2 0 3313 3124 324 0 0 0 chr6 134648703 134648739 -54630815 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 36 0 0 chr6 134648967 134648995 -54630559 + AT_rich Low_complexity Low_complexity 1 28 0 273 269 42 25 chr6 134649374 134649493 -54630061 + MIR SINE MIR 124 244 -18 39 38 0 0 chr6 134649493 134649546 -54630008 + AT_rich Low_complexity Low_complexity 1 53 0 2253 119 0 0 chr6 134649694 134650004 -54629550 + AluSg SINE Alu 1 310 0 1582 246 52 19 chr6 134650528 134650739 -54628815 - MLT1D LTR MaLR -8 497 294 2036 129 3 3 chr6 134650739 134651049 -54628505 - AluSq SINE Alu -3 310 1 1582 246 52 19 chr6 134651049 134651300 -54628254 - MLT1D LTR MaLR -211 294 20 217 310 0 26 chr6 134651364 134651480 -54628074 + A-rich Low_complexity Low_complexity 2 114 0 1302 227 18 82 chr6 134651920 134652308 -54627246 + L1MB8 LINE L1 13 375 -6484 3728 183 29 38 chr6 134652309 134653095 -54626459 - LTR1 LTR ERV1 0 785 7 3523 219 41 1 chr6 134653131 134653813 -54625741 + L1MB8 LINE L1 384 1092 -5767 1963 147 53 26 chr6 134653982 134654362 -54625192 + MLT1B LTR MaLR 1 390 0 257 275 0 2 chr6 134654363 134654430 -54625124 - MER77 LTR ERV1 -6 599 491 816 276 36 49 chr6 134654437 134654659 -54624895 + L1MB8 LINE L1 2610 2833 -4124 2262 64 3 0 chr6 134654659 134654966 -54624588 + AluY SINE Alu 1 308 0 816 276 36 49 chr6 134654966 134655200 -54624354 + L1MB8 LINE L1 2833 3023 -3934 2055 108 17 3 chr6 134655200 134655497 -54624057 + AluSx SINE Alu 1 301 -11 816 276 36 49 chr6 134655497 134655752 -54623802 + L1MB8 LINE L1 3023 3280 -3677 4886 200 41 55 chr6 134655772 134656833 -54622721 + L1MB8 LINE L1 4673 5747 -1242 2035 128 6 6 chr6 134656833 134657145 -54622409 + AluSx SINE Alu 1 312 0 4886 200 41 55 chr6 134657145 134658424 -54621130 + L1MB8 LINE L1 5747 6980 -9 215 231 0 19 chr6 134658425 134658477 -54621077 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2001 168 21 0 chr6 134658478 134658818 -54620736 - MER7A DNA MER2_type -1 345 1 513 84 0 0 chr6 134658849 134658920 -54620634 + (TA)n Simple_repeat Simple_repeat 2 72 0 408 227 68 53 chr6 134659518 134659650 -54619904 - L2 LINE L2 -1021 2293 2160 22 70 0 0 chr6 134660678 134660721 -54618833 + AT_rich Low_complexity Low_complexity 1 43 0 381 298 160 32 chr6 134661257 134661445 -54618109 - MIR SINE MIR -44 218 7 452 307 76 61 chr6 134663525 134663919 -54615635 - MLT1J LTR MaLR -1 510 111 462 311 19 50 chr6 134664545 134664771 -54614783 + MLT1I LTR MaLR 95 288 -121 1743 210 37 87 chr6 134664786 134665325 -54614229 + MLT2B1 LTR ERVL 3 514 -6 324 209 38 48 chr6 134665425 134665530 -54614024 - L1M4 LINE L1 -855 5291 5188 * 5798 85 18 21 chr6 134665511 134666362 -54613192 - L1PA13 LINE L1 -1 6162 5315 186 189 0 0 chr6 134666458 134666495 -54613059 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 412 275 16 48 chr6 134666660 134666849 -54612705 - L1MEc LINE L1 -4340 2056 1874 6073 189 16 14 chr6 134666874 134668267 -54611287 - L1MC1 LINE L1 -6 6327 4922 947 248 13 5 chr6 134668365 134668616 -54610938 - L1ME1 LINE L1 -129 6037 5784 253 268 47 31 chr6 134668625 134668752 -54610802 + L1M4 LINE L1 5089 5217 -929 3476 265 78 25 chr6 134668787 134669647 -54609907 - L1ME1 LINE L1 -396 5770 4957 2165 128 0 0 chr6 134669647 134669952 -54609602 - AluY SINE Alu -5 306 2 3476 265 78 25 chr6 134669952 134671126 -54608428 - L1ME1 LINE L1 -1209 4957 3633 3952 196 35 11 chr6 134671254 134672048 -54607506 - L1MC3 LINE L1 -216 7569 6757 1494 170 0 54 chr6 134672054 134672371 -54607183 - AluJb SINE Alu -4 308 9 1323 190 95 0 chr6 134672405 134672689 -54606865 + AluJo SINE Alu 1 311 -1 4077 136 22 68 chr6 134672756 134673578 -54605976 - LTR1 LTR ERV1 -1 784 1 36 53 0 0 chr6 134673693 134673750 -54605804 + AT_rich Low_complexity Low_complexity 1 57 0 285 371 0 9 chr6 134675957 134676073 -54603481 + L3b LINE CR1 1127 1241 -342 1624 230 88 69 chr6 134676738 134677316 -54602238 + MLT1E3 LTR MaLR 1 589 -35 341 323 59 19 chr6 134679879 134680168 -54599386 - L1ME4a LINE L1 -217 5904 5595 5086 174 15 26 chr6 134680335 134681834 -54597720 - L1MA7 LINE L1 -22 6269 4784 2324 243 24 61 chr6 134681814 134682517 -54597037 - L1M3b LINE L1 -5601 680 4 * 29 0 0 0 chr6 134684097 134684126 -54595428 + AT_rich Low_complexity Low_complexity 1 29 0 29 70 0 0 chr6 134684929 134684986 -54594568 + AT_rich Low_complexity Low_complexity 1 57 0 4568 136 44 60 chr6 134685271 134686166 -54593388 + L1MC1 LINE L1 5445 6324 -9 1187 232 45 0 chr6 134687068 134687357 -54592197 - L1MA4 LINE L1 -131 6169 5868 37 62 0 0 chr6 134688704 134688769 -54590785 + AT_rich Low_complexity Low_complexity 1 65 0 25 65 0 0 chr6 134689250 134689296 -54590258 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr6 134689326 134689349 -54590205 + AT_rich Low_complexity Low_complexity 1 23 0 209 371 56 21 chr6 134689395 134689538 -54590016 - MIR SINE MIR -86 176 29 26 0 0 0 chr6 134689644 134689670 -54589884 + AT_rich Low_complexity Low_complexity 1 26 0 429 284 118 38 chr6 134690157 134690368 -54589186 + MIR SINE MIR 25 252 -10 1168 138 54 0 chr6 134691594 134691797 -54587757 - L1PA8 LINE L1 -612 5519 5306 4793 92 5 0 chr6 134691797 134692454 -54587100 + L1PA8 LINE L1 5497 6171 -1 8252 156 21 14 chr6 134694032 134695486 -54584068 + Tigger1 DNA MER2_type 1 1464 -954 295 289 51 77 chr6 134695680 134695836 -54583718 - MIR SINE MIR -50 212 61 12456 25 5 4 chr6 134695837 134697340 -54582214 + L1P LINE L1 3353 4857 -1289 5699 132 41 7 chr6 134697340 134698285 -54581269 + Tigger1 DNA MER2_type 1441 2417 -1 29 78 0 0 chr6 134698799 134698863 -54580691 + AT_rich Low_complexity Low_complexity 1 64 0 9826 182 82 25 chr6 134698863 134705237 -54574317 - L1PB1 LINE L1 0 6867 114 1886 153 13 81 chr6 134705457 134705850 -54573704 - MER47A DNA MER2_type 0 366 1 347 343 80 11 chr6 134706584 134706759 -54572795 + MIR3 SINE MIR 19 205 -3 28 29 0 0 chr6 134707859 134707894 -54571660 + AT_rich Low_complexity Low_complexity 1 35 0 258 295 13 13 chr6 134708816 134708894 -54570660 - MIR SINE MIR -114 94 17 839 263 131 46 chr6 134708983 134709292 -54570262 - MLT1H LTR MaLR -2 547 197 1423 205 18 58 chr6 134709292 134709672 -54569882 - MLT1A1 LTR MaLR 0 365 1 839 263 131 46 chr6 134709672 134709750 -54569804 - MLT1H LTR MaLR -352 197 127 1147 271 61 65 chr6 134709750 134709990 -54569564 - LTR53 LTR ERVL 0 519 280 2278 173 47 16 chr6 134709990 134710476 -54569078 - LTR22 LTR ERVK -4 505 5 1147 271 61 65 chr6 134710476 134710756 -54568798 - LTR53 LTR ERVL -239 280 1 732 291 44 55 chr6 134710795 134711070 -54568484 + MLT2F LTR ERVL 1 272 -391 1715 276 50 8 chr6 134711080 134711559 -54567995 - LTR40a LTR ERVL 0 519 21 870 274 84 46 chr6 134711583 134711835 -54567719 + MLT2F LTR ERVL 280 552 -111 1051 192 201 41 chr6 134711835 134712204 -54567350 + MSTC LTR MaLR 1 428 0 870 274 84 46 chr6 134712204 134712319 -54567235 + MLT2F LTR ERVL 552 661 -2 386 346 61 26 chr6 134712392 134712623 -54566931 + L3 LINE CR1 1274 1512 -65 1418 183 36 46 chr6 134712662 134712968 -54566586 + AluJb SINE Alu 3 305 -7 1714 202 20 9 chr6 134713293 134713635 -54565919 + MER7A DNA MER2_type 1 344 -2 486 282 122 24 chr6 134714017 134714230 -54565324 + MIR SINE MIR 3 236 -26 207 204 0 0 chr6 134714392 134714436 -54565118 + T-rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr6 134714531 134714553 -54565001 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr6 134714992 134715021 -54564533 + AT_rich Low_complexity Low_complexity 1 29 0 996 263 116 31 chr6 134715280 134715902 -54563652 - L1MC4a LINE L1 -882 5477 5270 900 326 103 26 chr6 134716223 134717221 -54562333 - L1MC4a LINE L1 -1395 4751 3671 21 36 0 0 chr6 134717369 134717397 -54562157 + AT_rich Low_complexity Low_complexity 1 28 0 3205 132 21 0 chr6 134717544 134718023 -54561531 + MER1A DNA MER1_type 41 529 0 482 299 42 73 chr6 134719702 134720087 -54559467 - HAL1b LINE L1 -429 919 547 542 320 78 51 chr6 134720131 134720540 -54559014 - HAL1b LINE L1 -872 476 57 389 193 27 0 chr6 134721869 134722019 -54557535 + (CTA)n Simple_repeat Simple_repeat 2 155 0 207 100 0 0 chr6 134723362 134723392 -54556162 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr6 134723550 134723571 -54555983 + AT_rich Low_complexity Low_complexity 1 21 0 392 113 0 0 chr6 134724101 134724163 -54555391 - L1P LINE L1 -788 5367 5306 * 5042 129 2 20 chr6 134724162 134724976 -54554578 + L1PA13 LINE L1 5363 6162 -1 325 191 15 0 chr6 134725333 134725401 -54554153 + L2 LINE L2 650 718 -2596 1119 186 108 48 chr6 134725406 134725701 -54553853 + MLT1A1 LTR MaLR 1 313 -52 23 68 0 0 chr6 134725907 134725951 -54553603 + AT_rich Low_complexity Low_complexity 1 44 0 2494 78 0 0 chr6 134726828 134727137 -54552417 + AluY SINE Alu 1 309 -2 378 362 88 39 chr6 134727455 134728344 -54551210 + L2 LINE L2 1913 2844 -470 773 240 5 34 chr6 134728932 134729140 -54550414 + MER20 DNA MER1_type 4 205 -14 1687 264 68 8 chr6 134729145 134729634 -54549920 + LTR53 LTR ERVL 2 519 0 6070 201 62 11 chr6 134729642 134731723 -54547831 + L1PA16 LINE L1 3862 6061 -105 2279 94 51 184 chr6 134731726 134732237 -54547317 - MLT2A2 LTR ERVL -8 445 3 477 105 186 0 chr6 134732242 134732328 -54547226 + L1PA16 LINE L1 6056 6157 -9 21 36 0 0 chr6 134733199 134733227 -54546327 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr6 134734435 134734460 -54545094 + AT_rich Low_complexity Low_complexity 1 25 0 274 289 31 57 chr6 134734760 134734919 -54544635 + L2 LINE L2 3077 3231 -82 1450 261 68 74 chr6 134735115 134736367 -54543187 + L1MCc LINE L1 649 2015 -4926 461 133 12 0 chr6 134736442 134736525 -54543029 + L1PB2 LINE L1 6067 6150 -1 360 212 15 0 chr6 134736652 134736718 -54542836 + AluJb SINE Alu 1 67 -235 842 104 15 30 chr6 134736719 134736854 -54542700 + AluSg/x SINE Alu 171 303 -9 493 165 0 2 chr6 134736854 134737066 -54542488 + AluJb SINE Alu 59 302 0 389 250 91 0 chr6 134737075 134737207 -54542347 + L1MCc LINE L1 2366 2509 -4613 517 211 93 31 chr6 134737341 134737535 -54542019 + L1MCc LINE L1 2575 2780 -4342 1502 274 97 11 chr6 134737539 134738212 -54541342 + L1ME2 LINE L1 5443 6334 0 3950 205 34 38 chr6 134738421 134740259 -54539295 - L1MB3 LINE L1 -8 6175 4344 373 261 38 29 chr6 134740464 134740642 -54538912 + MER58A DNA MER1_type 11 224 0 189 241 0 0 chr6 134741840 134741894 -54537660 + CT-rich Low_complexity Low_complexity 2 55 0 23 0 0 0 chr6 134742195 134742218 -54537336 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr6 134742388 134742418 -54537136 + AT_rich Low_complexity Low_complexity 1 30 0 1269 144 80 0 chr6 134742830 134743094 -54536460 + L1MA7 LINE L1 6004 6288 -3 482 322 83 39 chr6 134743221 134743606 -54535948 - MLT1K LTR MaLR -18 570 169 231 281 11 90 chr6 134743733 134743822 -54535732 + MLT1J LTR MaLR 104 185 -326 365 310 23 0 chr6 134744509 134744638 -54534916 + CT-rich Low_complexity Low_complexity 4 135 0 5254 167 54 21 chr6 134744860 134745216 -54534338 + L1MC1 LINE L1 5043 5386 -947 1451 211 56 28 chr6 134745216 134745571 -54533983 + MLT1A1 LTR MaLR 1 365 0 5254 167 54 21 chr6 134745571 134746453 -54533101 + L1MC1 LINE L1 5386 6315 -18 23 0 0 0 chr6 134746837 134746860 -54532694 + AT_rich Low_complexity Low_complexity 1 23 0 501 318 53 45 chr6 134746860 134747348 -54532206 - L1ME LINE L1 -375 6189 5698 444 302 93 22 chr6 134747460 134747728 -54531826 - L1ME LINE L1 -984 5556 5270 231 247 155 10 chr6 134747813 134747910 -54531644 + MIR SINE MIR 2 112 -150 895 206 120 22 chr6 134748144 134748411 -54531143 + Looper DNA T2_type 779 1071 -487 635 323 18 9 chr6 134748425 134748645 -54530909 - HERV16 LTR ERVL -2919 2077 1856 446 160 40 0 chr6 134748766 134748841 -54530713 - FLAM_A SINE Alu -32 110 33 376 251 62 40 chr6 134748841 134749016 -54530538 - HERV16 LTR ERVL -3273 1723 1478 813 290 92 22 chr6 134749158 134749475 -54530079 - HERV16 LTR ERVL -3699 1297 959 1679 259 59 57 chr6 134749520 134749605 -54529949 - L1ME LINE L1 -2403 4137 4054 2455 48 3 7 chr6 134749605 134749915 -54529639 - AluY SINE Alu -2 309 1 1679 259 59 57 chr6 134749915 134750850 -54528704 - L1ME LINE L1 -2486 4054 3115 676 298 36 9 chr6 134751113 134751445 -54528109 - L1M4 LINE L1 -3129 3017 2677 270 237 0 26 chr6 134751462 134751515 -54528039 + (TA)n Simple_repeat Simple_repeat 2 54 -21 4254 64 54 32 chr6 134751515 134752112 -54527442 - LTR66 LTR ERVL 0 610 1 270 237 0 26 chr6 134752112 134752134 -54527420 + (TA)n Simple_repeat Simple_repeat 54 75 0 325 235 42 78 chr6 134752645 134752811 -54526743 - L1M4 LINE L1 -3801 2345 2186 2069 125 16 22 chr6 134752811 134753122 -54526432 - AluSx SINE Alu -1 311 3 582 260 67 61 chr6 134753184 134753250 -54526304 - L1ME LINE L1 -4151 2570 2506 189 0 0 0 chr6 134753250 134753271 -54526283 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 582 260 67 61 chr6 134753271 134753565 -54525989 - L1ME LINE L1 -4215 2506 2208 25 65 0 0 chr6 134753565 134753611 -54525943 + AT_rich Low_complexity Low_complexity 1 46 0 273 296 52 22 chr6 134753702 134753837 -54525717 - L1ME LINE L1 -4550 1990 1852 1759 166 65 11 chr6 134753844 134754200 -54525354 + L1MB5 LINE L1 5792 6166 -8 2241 39 60 11 chr6 134755595 134755880 -54523674 - AluY SINE Alu -12 299 1 522 275 101 17 chr6 134755888 134756066 -54523488 - L1ME LINE L1 -5432 1098 906 2083 145 3 0 chr6 134756411 134756722 -54522832 - AluSx SINE Alu 0 312 1 1121 29 0 0 chr6 134757835 134757972 -54521582 - L1PA6 LINE L1 -4 6150 6014 4686 131 28 20 chr6 134758650 134759541 -54520013 - L1PA16 LINE L1 -9 6157 5225 1309 236 3 0 chr6 134759534 134759847 -54519707 + L1PA16 LINE L1 4903 5216 -930 * 21 36 0 0 chr6 134759887 134759915 -54519639 + AT_rich Low_complexity Low_complexity 1 28 0 391 234 41 90 chr6 134760367 134760546 -54519008 + L1ME3A LINE L1 6000 6170 0 193 250 0 21 chr6 134761216 134761264 -54518290 + L2 LINE L2 3267 3313 0 200 83 0 28 chr6 134761538 134761574 -54517980 + (TA)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr6 134762074 134762096 -54517458 + AT_rich Low_complexity Low_complexity 1 22 0 15370 45 3 2 chr6 134763841 134765755 -54513799 - L1PA5 LINE L1 -918 5228 3312 7420 39 0 0 chr6 134765755 134766677 -54512877 + L1PA5 LINE L1 5233 6154 0 381 241 37 117 chr6 134768387 134768549 -54511005 - MER5B DNA MER1_type -1 177 29 1092 221 82 3 chr6 134769212 134769543 -54510011 + L1MC1 LINE L1 2976 3332 -2814 4823 219 51 33 chr6 134769557 134769865 -54509689 + L1MC1 LINE L1 3573 3874 -2459 1792 165 3 19 chr6 134769865 134770174 -54509380 + AluSx SINE Alu 1 304 -8 4823 219 51 33 chr6 134770174 134772626 -54506928 + L1MC1 LINE L1 3874 6323 -10 381 291 68 50 chr6 134774284 134774504 -54505050 + L1MEd LINE L1 477 700 -5419 321 245 102 57 chr6 134774901 134775215 -54504339 - L1MEd LINE L1 -4887 1232 905 21 0 0 0 chr6 134775326 134775347 -54504207 + AT_rich Low_complexity Low_complexity 1 21 0 604 284 119 51 chr6 134775408 134775608 -54503946 + L1M4 LINE L1 4748 4933 -1213 1886 188 20 33 chr6 134775608 134776001 -54503553 - MLT1B LTR MaLR -2 388 1 604 284 119 51 chr6 134776001 134776345 -54503209 + L1M4 LINE L1 4933 5329 -817 21 0 0 0 chr6 134776712 134776733 -54502821 + AT_rich Low_complexity Low_complexity 1 21 0 551 176 92 0 chr6 134776735 134776877 -54502677 + L1MA7 LINE L1 6135 6289 -2 36 23 0 0 chr6 134777354 134777397 -54502157 + AT_rich Low_complexity Low_complexity 1 43 0 227 294 101 9 chr6 134778493 134778602 -54500952 + MIR SINE MIR 73 191 -71 313 267 33 0 chr6 134779839 134779959 -54499595 + L1MC4 LINE L1 7918 8041 -1 3842 91 42 21 chr6 134780369 134780941 -54498613 - L1PA13 LINE L1 -1 6162 5579 21 0 0 0 chr6 134782006 134782027 -54497527 + AT_rich Low_complexity Low_complexity 1 21 0 184 191 48 48 chr6 134783115 134783178 -54496376 - MER5C DNA MER1_type -36 288 226 292 351 53 39 chr6 134783402 134783610 -54495944 + MIR SINE MIR 10 220 -42 182 259 125 62 chr6 134783711 134783823 -54495731 - L2 LINE L2 -1346 1968 1850 183 289 18 105 chr6 134784897 134785011 -54494543 - MER5A DNA MER1_type -5 184 81 21 0 0 0 chr6 134785714 134785735 -54493819 + AT_rich Low_complexity Low_complexity 1 21 0 1625 197 10 3 chr6 134785986 134786285 -54493269 - AluJo SINE Alu -1 311 11 27 29 0 0 chr6 134786573 134786607 -54492947 + AT_rich Low_complexity Low_complexity 1 34 0 210 290 73 106 chr6 134786770 134787015 -54492539 + L3 LINE CR1 1186 1422 -155 186 331 96 52 chr6 134787077 134787213 -54492341 + L3 LINE CR1 1368 1509 -68 460 260 0 0 chr6 134787257 134787357 -54492197 - MER81 DNA DNA -14 100 1 308 372 102 40 chr6 134787614 134788136 -54491418 + L2 LINE L2 2707 3255 -58 1856 129 16 44 chr6 134789210 134789528 -54490026 + AluSx SINE Alu 1 309 -3 554 387 52 34 chr6 134790091 134790749 -54488805 - L2 LINE L2 -3 3269 2601 491 291 35 124 chr6 134790761 134791043 -54488511 - MIR SINE MIR -1 261 5 362 209 41 23 chr6 134791119 134791291 -54488263 + (TA)n Simple_repeat Simple_repeat 1 175 0 1809 246 130 46 chr6 134792935 134792954 -54486600 + L1MA9 LINE L1 1 17 -7013 1642 208 36 23 chr6 134792954 134793157 -54486397 + MSTD LTR MaLR 3 215 -181 180 0 0 0 chr6 134793157 134793177 -54486377 + (TC)n Simple_repeat Simple_repeat 1 20 0 1642 208 36 23 chr6 134793177 134793362 -54486192 + MSTD LTR MaLR 215 396 0 1809 246 130 46 chr6 134793362 134794059 -54485495 + L1MA9 LINE L1 17 777 -6253 2546 229 69 8 chr6 134794112 134795097 -54484457 + L1MA9 LINE L1 1830 2869 -4238 1054 339 10 63 chr6 134795126 134795524 -54484030 - L1M2 LINE L1 -661 5630 5254 5223 168 59 20 chr6 134795551 134797197 -54482357 + L1MA9 LINE L1 5543 7259 -13 200 324 50 90 chr6 134797416 134797638 -54481916 - L2 LINE L2 -846 2468 2256 810 336 39 10 chr6 134798502 134798814 -54480740 + LTR16C LTR ERVL 169 489 -2 228 253 0 0 chr6 134799596 134799671 -54479883 + (CA)n Simple_repeat Simple_repeat 2 76 0 234 269 32 11 chr6 134800275 134800368 -54479186 + (TA)n Simple_repeat Simple_repeat 2 96 0 21 0 0 0 chr6 134801384 134801405 -54478149 + AT_rich Low_complexity Low_complexity 1 21 0 250 285 127 28 chr6 134803444 134803572 -54475982 + MIR SINE MIR 28 164 -63 360 0 0 0 chr6 134804263 134804303 -54475251 + (TG)n Simple_repeat Simple_repeat 2 41 0 14771 114 118 51 chr6 134804777 134806451 -54473103 + L1PB1 LINE L1 1 1936 -4927 1943 124 34 7 chr6 134806451 134806742 -54472812 + AluSc SINE Alu 1 299 -10 14771 114 118 51 chr6 134806742 134807831 -54471723 + L1PB1 LINE L1 1936 2950 -3913 6355 125 36 2 chr6 134807863 134809097 -54470457 + L1PB1 LINE L1 5578 6867 0 3519 152 35 17 chr6 134809122 134810007 -54469547 + L1MB7 LINE L1 5188 6177 -7 687 290 110 42 chr6 134810094 134810521 -54469033 + L2 LINE L2 2310 2765 -549 623 350 52 34 chr6 134810719 134811334 -54468220 + L1MEc LINE L1 288 913 -5483 1360 261 93 41 chr6 134811340 134812186 -54467368 + L1MEc LINE L1 963 1852 -4544 774 226 10 10 chr6 134812183 134812378 -54467176 + L1MD3 LINE L1 7789 7983 -12 * 1237 207 49 34 chr6 134812373 134812818 -54466736 + L1MEc LINE L1 1850 2301 -4095 182 209 0 0 chr6 134814407 134814450 -54465104 + L2 LINE L2 2996 3038 -234 508 285 57 13 chr6 134814548 134814706 -54464848 - MER117 DNA MER1_type -32 165 1 21 0 0 0 chr6 134814919 134814940 -54464614 + AT_rich Low_complexity Low_complexity 1 21 0 197 219 98 98 chr6 134815439 134815521 -54464033 + L2 LINE L2 3181 3262 -10 205 267 89 59 chr6 134815613 134815714 -54463840 + MIR3 SINE MIR 102 205 -3 188 254 32 32 chr6 134815843 134815906 -54463648 - L2 LINE L2 0 3313 3251 2201 23 0 0 chr6 134815925 134816181 -54463373 + L1PA4 LINE L1 5895 6150 -5 198 0 0 0 chr6 134816181 134816203 -54463351 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1510 88 0 0 chr6 134816233 134816426 -54463128 - AluSg SINE Alu -116 194 2 231 36 0 0 chr6 134816660 134816688 -54462866 + (CA)n Simple_repeat Simple_repeat 1 28 0 26 0 0 0 chr6 134817899 134817925 -54461629 + AT_rich Low_complexity Low_complexity 1 26 0 2215 102 0 0 chr6 134819184 134819478 -54460076 + AluSg1 SINE Alu 1 294 -15 1833 176 20 61 chr6 134819608 134819667 -54459887 - MLT2C1 LTR ERVL -2 395 335 246 32 0 0 chr6 134819667 134819698 -54459856 + (CA)n Simple_repeat Simple_repeat 2 32 0 1833 176 20 61 chr6 134819698 134820047 -54459507 - MLT2C1 LTR ERVL -62 335 4 320 319 76 38 chr6 134821361 134821546 -54458008 - L2 LINE L2 -4 3309 3118 1438 42 0 0 chr6 134821592 134821760 -54457794 - AluY SINE Alu -17 294 127 221 401 0 8 chr6 134821760 134821892 -54457662 - L2 LINE L2 -248 3065 2935 234 324 270 11 chr6 134821919 134822197 -54457357 - L2 LINE L2 -453 2861 2512 1354 334 155 37 chr6 134822296 134822789 -54456765 - L2 LINE L2 -796 2518 2084 2454 156 19 12 chr6 134822789 134823220 -54456334 + Tigger2a DNA MER2_type 1 434 0 1354 334 155 37 chr6 134823220 134824104 -54455450 - L2 LINE L2 -1230 2084 979 32 0 0 0 chr6 134825429 134825461 -54454093 + AT_rich Low_complexity Low_complexity 1 32 0 995 183 112 0 chr6 134825584 134825872 -54453682 + L1MA4 LINE L1 6015 6330 0 25 51 0 0 chr6 134826204 134826243 -54453311 + AT_rich Low_complexity Low_complexity 1 39 0 823 286 53 44 chr6 134826467 134827235 -54452319 + L1ME LINE L1 4393 5167 -979 322 89 18 0 chr6 134827241 134827297 -54452257 + MER41B LTR ERV1 491 547 -88 589 263 25 60 chr6 134827302 134827728 -54451826 + L1ME LINE L1 5158 5570 -592 2156 104 0 0 chr6 134827772 134828052 -54451502 - AluSx SINE Alu -2 310 31 285 118 20 0 chr6 134828064 134828115 -54451439 - L1MC2 LINE L1 -25 6319 6268 527 356 80 30 chr6 134828134 134828594 -54450960 - L1M4 LINE L1 -1979 4167 3685 606 299 64 73 chr6 134828639 134829063 -54450491 - HAL1 LINE L1 -1029 1478 1059 3527 152 27 16 chr6 134830112 134830749 -54448805 + MER73 LTR ERVL 1 644 0 2083 124 0 10 chr6 134830817 134831131 -54448423 + AluSx SINE Alu 1 311 -1 35 41 0 0 chr6 134831669 134831718 -54447836 + AT_rich Low_complexity Low_complexity 1 49 0 269 202 236 22 chr6 134831907 134831996 -54447558 + MIR SINE MIR 151 258 -4 201 98 219 0 chr6 134832813 134832854 -54446700 + L2 LINE L2 3262 3311 -2 327 65 0 0 chr6 134833831 134833877 -54445677 + (TG)n Simple_repeat Simple_repeat 2 47 0 361 277 10 103 chr6 134833972 134834167 -54445387 + MER5B DNA MER1_type 1 177 -1 250 224 205 23 chr6 134834882 134835001 -54444553 - MIR SINE MIR -110 152 15 1603 191 0 7 chr6 134837406 134837689 -54441865 + AluJb SINE Alu 1 281 -31 477 0 0 0 chr6 134837692 134837745 -54441809 + (GAAAA)n Simple_repeat Simple_repeat 3 55 0 961 125 24 0 chr6 134837747 134837915 -54441639 + GA-rich Low_complexity Low_complexity 2 173 0 336 291 28 35 chr6 134888086 134888227 -54391327 + MIR SINE MIR 8 147 -115 2047 210 33 9 chr6 134888227 134888680 -54390874 + MER101 LTR ERV1 11 474 0 335 267 0 59 chr6 134888847 134888982 -54390572 - AluSp/q SINE Alu 0 303 177 3358 120 16 38 chr6 134889091 134889446 -54390108 - Tigger2 DNA MER2_type -2018 700 360 2114 124 3 0 chr6 134889446 134889744 -54389810 - AluSq SINE Alu -14 299 1 3358 120 16 38 chr6 134889744 134889947 -54389607 - Tigger2 DNA MER2_type -2358 360 154 1894 128 8 0 chr6 134889947 134890213 -54389341 - AluSx SINE Alu -36 276 9 2574 63 0 0 chr6 134890329 134890632 -54388922 - AluSg SINE Alu -7 303 1 331 271 124 94 chr6 134891181 134891584 -54387970 - L1M2 LINE L1 -5845 1004 590 3448 209 37 11 chr6 134891730 134892619 -54386935 - L1MEc LINE L1 -4341 2043 1042 376 317 0 0 chr6 134892725 134892829 -54386725 - FRAM SINE Alu 0 166 63 229 87 0 65 chr6 134893032 134893078 -54386476 + L1PA13 LINE L1 6118 6160 -3 438 185 22 22 chr6 134894041 134894160 -54385394 + AluSg/x SINE Alu 187 305 0 1489 301 37 4 chr6 134894514 134895025 -54384529 - L1MEc LINE L1 -5834 729 202 300 200 0 0 chr6 134896140 134896205 -54383349 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 453 275 97 11 chr6 134897647 134897911 -54381643 - LTR33A LTR ERVL 0 523 328 252 364 8 0 chr6 134899725 134899843 -54379711 - LTR33 LTR ERVL -389 132 14 7404 129 4 2 chr6 134899959 134901118 -54378436 - L1P LINE L1 -925 5221 4060 5976 86 2 9 chr6 134901115 134901933 -54377621 + L1PA8A LINE L1 5319 6131 0 * 28 0 0 0 chr6 134901995 134902023 -54377531 + AT_rich Low_complexity Low_complexity 1 28 0 274 217 56 21 chr6 134902138 134902281 -54377273 + T-rich Low_complexity Low_complexity 4 151 0 21 0 0 0 chr6 134902651 134902672 -54376882 + AT_rich Low_complexity Low_complexity 1 21 0 266 336 40 16 chr6 134902692 134902817 -54376737 + MER5B DNA MER1_type 10 137 -41 880 117 0 37 chr6 134903033 134903196 -54376358 + L1MA4 LINE L1 6138 6294 -6 246 128 0 0 chr6 134904176 134904215 -54375339 + (CA)n Simple_repeat Simple_repeat 1 39 0 180 0 0 0 chr6 134904903 134904923 -54374631 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1595 225 61 59 chr6 134905281 134905824 -54373730 - LTR68 LTR ERV1 -24 716 173 2198 125 0 3 chr6 134905950 134906262 -54373292 + AluSx SINE Alu 2 312 0 5839 122 12 0 chr6 134906262 134907253 -54372301 + L1PA14 LINE L1 5158 6160 -1 984 151 38 72 chr6 134907329 134907620 -54371934 - L1MA7 LINE L1 -5 7307 7027 12180 206 47 17 chr6 134907631 134910854 -54368700 - L1MA7 LINE L1 -743 6424 3255 2329 282 46 27 chr6 134910951 134911270 -54368284 - L1MA7 LINE L1 -4180 2988 2677 462 101 0 0 chr6 134911270 134911339 -54368215 + (TTG)n Simple_repeat Simple_repeat 1 69 0 2329 282 46 27 chr6 134911339 134912429 -54367125 - L1MA7 LINE L1 -4491 2677 1545 314 268 152 9 chr6 134914520 134914632 -54364922 + L2 LINE L2 3186 3313 0 251 171 0 0 chr6 134914789 134914830 -54364724 - MLT2C2 LTR ERVL 0 464 424 198 71 0 0 chr6 134914830 134914858 -54364696 + (TG)n Simple_repeat Simple_repeat 1 28 0 354 321 103 84 chr6 134915298 134916609 -54362945 - L2 LINE L2 -24 3248 1917 31 68 0 0 chr6 134917258 134917317 -54362237 + AT_rich Low_complexity Low_complexity 1 59 0 2014 239 28 8 chr6 134917663 134918275 -54361279 - L1M4 LINE L1 -2976 3170 2547 315 306 197 20 chr6 134918471 134918618 -54360936 + MER5A DNA MER1_type 9 181 -8 408 320 35 25 chr6 134918647 134918844 -54360710 + L2 LINE L2 3114 3312 -1 266 360 20 13 chr6 134918932 134919082 -54360472 + L2 LINE L2 2831 2981 -291 341 237 129 29 chr6 134919333 134919472 -54360082 - L1 LINE L1 -2214 3932 3780 1631 194 44 3 chr6 134919478 134919793 -54359761 - MER7A DNA MER2_type -10 336 11 1302 155 0 114 chr6 134924997 134925338 -54354216 - TAR1 Satellite telomeric -1808 303 2 * 1321 211 16 19 chr6 134925162 134925484 -54354070 - LTR60 LTR ERV1 -37 549 229 630 208 40 64 chr6 134925484 134925657 -54353897 - LTR60 LTR ERV1 -307 279 111 477 208 30 0 chr6 134925700 134925801 -54353753 - LTR60 LTR ERV1 -480 106 3 260 221 188 34 chr6 134926172 134926270 -54353284 + LTR37A LTR ERV1 255 337 -89 1868 204 73 18 chr6 134926270 134926707 -54352847 - LOR1b LTR ERV1 0 461 1 260 221 188 34 chr6 134926707 134926757 -54352797 + LTR37A LTR ERV1 337 426 0 2830 46 6 0 chr6 134927573 134927919 -54351635 - L1PA5 LINE L1 -420 5734 5387 3277 43 0 0 chr6 134927919 134928313 -54351241 + L1PA5 LINE L1 5759 6153 -1 1092 146 18 46 chr6 134928711 134928930 -54350624 + L1MA4 LINE L1 4507 4719 -1427 3888 132 20 37 chr6 134928930 134929640 -54349914 + L1MA4 LINE L1 5258 5955 -345 8656 166 8 28 chr6 134929649 134932503 -54347051 + L1MA2 LINE L1 3428 6222 -82 2369 178 34 22 chr6 134932515 134933014 -54346540 + L1MA7 LINE L1 5368 5872 -419 350 213 0 32 chr6 134933082 134933176 -54346378 - Charlie1b DNA MER1_type -223 300 210 6047 184 23 20 chr6 134933181 134935463 -54344091 - L1PA16 LINE L1 -4 6162 3883 983 265 0 9 chr6 134935479 134935694 -54343860 - Charlie1b DNA MER1_type -310 213 1 345 271 75 75 chr6 134936602 134937285 -54342269 - L1M4 LINE L1 -2346 3800 3118 24 67 0 0 chr6 134937765 134937810 -54341744 + AT_rich Low_complexity Low_complexity 1 45 0 2101 137 0 7 chr6 134938174 134938481 -54341073 - AluSx SINE Alu -7 305 1 22 0 0 0 chr6 134938527 134938549 -54341005 + AT_rich Low_complexity Low_complexity 1 22 0 244 298 94 52 chr6 134938958 134939149 -54340405 - HAL1 LINE L1 -861 1646 1448 237 228 87 103 chr6 134940163 134940347 -54339207 - L1MC4a LINE L1 -1804 6004 5824 24 0 0 0 chr6 134940539 134940563 -54338991 + AT_rich Low_complexity Low_complexity 1 24 0 581 323 164 15 chr6 134941206 134941710 -54337844 - L2 LINE L2 -1 3312 2710 1671 190 56 39 chr6 134941719 134942129 -54337425 - L1MA8 LINE L1 -3 6288 5872 729 308 187 12 chr6 134942165 134942571 -54336983 - L2 LINE L2 -600 2714 2238 365 234 196 0 chr6 134944616 134944723 -54334831 - AluJb SINE Alu 0 302 175 1687 189 0 16 chr6 134944850 134944981 -54334573 + AluJo SINE Alu 1 133 -179 189 0 0 0 chr6 134944981 134945002 -54334552 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 1687 189 0 16 chr6 134945002 134945183 -54334371 + AluJo SINE Alu 133 308 -4 8809 154 29 14 chr6 134946424 134948000 -54331554 + Tigger1 DNA MER2_type 1 1599 -819 204 97 0 0 chr6 134948622 134948653 -54330901 + (A)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr6 134949149 134949172 -54330382 + AT_rich Low_complexity Low_complexity 1 23 0 566 14 14 0 chr6 134949172 134949243 -54330311 + (TTATG)n Simple_repeat Simple_repeat 4 75 0 2170 86 10 0 chr6 134949247 134949538 -54330016 - AluY SINE Alu -17 294 1 36 53 0 0 chr6 134949582 134949639 -54329915 + AT_rich Low_complexity Low_complexity 1 57 0 323 313 0 0 chr6 134949820 134949948 -54329606 + (TA)n Simple_repeat Simple_repeat 2 129 0 287 281 129 28 chr6 134950074 134950252 -54329302 - L1MC4a LINE L1 -2024 5784 5589 32 26 0 0 chr6 134950382 134950421 -54329133 + AT_rich Low_complexity Low_complexity 1 39 0 305 254 98 43 chr6 134950816 134951072 -54328482 - L1MC4a LINE L1 -2747 3399 3130 352 259 38 57 chr6 134951108 134951266 -54328288 - L1MC4a LINE L1 -3123 3023 2869 22 56 0 0 chr6 134951363 134951399 -54328155 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 134951705 134951727 -54327827 + AT_rich Low_complexity Low_complexity 1 22 0 457 305 114 41 chr6 134951746 134952113 -54327441 + MLT1I LTR MaLR 1 394 -15 24 53 0 0 chr6 134954108 134954146 -54325408 + AT_rich Low_complexity Low_complexity 1 38 0 2148 92 14 0 chr6 134954428 134954723 -54324831 + AluSx SINE Alu 1 299 -13 21 36 0 0 chr6 134957212 134957240 -54322314 + AT_rich Low_complexity Low_complexity 1 28 0 1016 178 0 0 chr6 134957952 134958115 -54321439 + FRAM SINE Alu 1 162 -14 198 354 140 46 chr6 134958386 134958468 -54321086 - L2 LINE L2 -350 2964 2891 445 99 113 0 chr6 134958468 134958539 -54321015 + MADE1 DNA Mariner 2 80 0 198 354 140 46 chr6 134958539 134959501 -54320053 - L2 LINE L2 -423 2891 1822 225 368 81 0 chr6 134959565 134959652 -54319902 - L2 LINE L2 -45 3227 3134 22 0 0 0 chr6 134959783 134959805 -54319749 + AT_rich Low_complexity Low_complexity 1 22 0 4105 200 34 18 chr6 134959812 134961253 -54318301 - L1MB1 LINE L1 -7 5985 4520 * 5018 249 43 12 chr6 134961248 134962881 -54316673 - L1MB1 LINE L1 -2096 3874 2191 6098 98 24 1 chr6 134962888 134963842 -54315712 - L1PA8 LINE L1 -40 6132 5162 * 6283 131 11 0 chr6 134963837 134964835 -54314719 + L1PA8 LINE L1 4159 5167 -979 531 236 57 0 chr6 134964839 134964996 -54314558 - L1MB1 LINE L1 -3771 2199 2034 5287 67 9 1 chr6 134965000 134965687 -54313867 - L1PA7 LINE L1 -11 6143 5452 14276 94 23 37 chr6 134965687 134967956 -54311598 - L1PA7 LINE L1 -1706 4440 2202 9614 120 27 31 chr6 134967951 134970157 -54309397 + L1PA7 LINE L1 294 2525 -3936 * 362 262 59 36 chr6 134970161 134970382 -54309172 - L1MB1 LINE L1 -3951 2021 1796 198 0 0 0 chr6 134970390 134970412 -54309142 + (TG)n Simple_repeat Simple_repeat 1 22 0 2003 118 0 11 chr6 134970446 134970725 -54308829 + AluSq SINE Alu 3 278 -35 484 29 15 0 chr6 134970869 134970937 -54308617 - AluY SINE Alu -241 69 1 2654 225 79 39 chr6 134970938 134972131 -54307423 - L1MB1 LINE L1 -4207 1763 720 2002 110 3 61 chr6 134972131 134972459 -54307095 - AluSc SINE Alu 0 309 1 2654 225 79 39 chr6 134972459 134972667 -54306887 - L1MB1 LINE L1 -5250 720 522 5221 124 47 26 chr6 134972685 134973622 -54305932 - MER11B LTR ERVK -150 1086 1 1492 291 39 32 chr6 134973778 134974682 -54304872 - L1MB1 LINE L1 -5371 520 12 28 48 0 0 chr6 134974738 134974780 -54304774 + AT_rich Low_complexity Low_complexity 1 42 0 1330 212 72 0 chr6 134975037 134975207 -54304347 - AluJo SINE Alu -6 306 107 402 21 0 0 chr6 134975207 134975254 -54304300 + (TG)n Simple_repeat Simple_repeat 2 48 0 1330 212 72 0 chr6 134975254 134975361 -54304193 - AluJo SINE Alu -205 107 9 200 244 0 0 chr6 134975611 134975652 -54303902 - L3 LINE CR1 -9 1568 1528 1595 190 18 0 chr6 134976541 134976825 -54302729 + LTR57 LTR ERVL 1 289 -122 * 2518 143 0 49 chr6 134976805 134977252 -54302302 - MER41B LTR ERV1 -210 425 1 1088 308 61 11 chr6 134977253 134977613 -54301941 - LTR52-int LTR ERVL -717 2839 2462 1390 226 56 29 chr6 134977622 134977998 -54301556 - LTR52-int LTR ERVL -4119 1566 1181 1867 142 0 7 chr6 134977999 134978274 -54301280 + AluSx SINE Alu 3 275 -37 221 56 0 28 chr6 134978285 134978321 -54301233 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 626 188 26 61 chr6 134978337 134978755 -54300799 - MER4C LTR ERV1 0 465 2 882 191 18 9 chr6 134978900 134979208 -54300346 + CT-rich Low_complexity Low_complexity 1 310 0 738 209 34 0 chr6 134979216 134979364 -54300190 - LTR52-int LTR ERVL -2587 969 817 2667 241 41 13 chr6 134979378 134980010 -54299544 - LTR52-int LTR ERVL -2900 656 7 1222 232 69 35 chr6 134980010 134980385 -54299169 - LTR52 LTR ERVL -10 411 24 351 0 0 0 chr6 134980832 134980871 -54298683 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2442 98 28 92 chr6 134981496 134981953 -54297601 + MSTA LTR MaLR 1 428 0 2230 119 0 0 chr6 134981984 134982286 -54297268 + AluSx SINE Alu 1 302 -10 522 57 0 0 chr6 134983047 134983117 -54296437 + (TG)n Simple_repeat Simple_repeat 1 70 0 27 49 0 0 chr6 134983141 134983182 -54296372 + AT_rich Low_complexity Low_complexity 1 41 0 228 216 59 0 chr6 134983740 134983791 -54295763 - L1MC4 LINE L1 -1339 6703 6650 892 124 12 37 chr6 134983811 134983972 -54295582 - MLT2C2 LTR ERVL -307 157 1 1182 240 63 25 chr6 134984280 134984597 -54294957 - MLT1C LTR MaLR -77 390 62 338 60 0 20 chr6 134984612 134984662 -54294892 + (CA)n Simple_repeat Simple_repeat 2 50 0 272 230 34 14 chr6 134984821 134984969 -54294585 + (TA)n Simple_repeat Simple_repeat 1 151 0 205 176 0 0 chr6 134984988 134985022 -54294532 + (CATA)n Simple_repeat Simple_repeat 2 35 0 264 157 59 0 chr6 134985062 134985113 -54294441 - MLT1C LTR MaLR -336 54 1 247 344 0 10 chr6 134985129 134985225 -54294329 + MIR3 SINE MIR 108 202 -6 34 65 0 0 chr6 134985226 134985288 -54294266 + AT_rich Low_complexity Low_complexity 1 62 0 252 0 0 0 chr6 134985857 134985885 -54293669 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 235 348 89 28 chr6 134985942 134986189 -54293365 - L2 LINE L2 -785 2529 2268 718 215 62 58 chr6 134986588 134986830 -54292724 + L1MD2 LINE L1 6100 6342 -17 487 158 32 11 chr6 134987217 134987312 -54292242 + MER4A LTR ERV1 1 97 -567 * 1312 137 167 125 chr6 134987311 134987670 -54291884 + MER4A LTR ERV1 259 632 -32 29 70 0 0 chr6 134987672 134987729 -54291825 + AT_rich Low_complexity Low_complexity 1 57 0 321 136 51 0 chr6 134987735 134987794 -54291760 + MER4A LTR ERV1 603 664 0 385 284 94 0 chr6 134988303 134988430 -54291124 + MIR SINE MIR 80 218 -44 1884 139 17 41 chr6 134989037 134989381 -54290173 - MER1B DNA MER1_type -1 336 1 1075 248 42 13 chr6 134989730 134990113 -54289441 - L1MEc LINE L1 -1369 4846 4453 1917 180 96 28 chr6 134990148 134990295 -54289259 - L1MB7 LINE L1 -151 6033 5898 910 231 10 123 chr6 134990295 134990701 -54288853 - MLT1A1 LTR MaLR -2 363 4 1917 180 96 28 chr6 134990701 134991020 -54288534 - L1MB7 LINE L1 -286 5898 5535 251 232 0 63 chr6 134991035 134991130 -54288424 + L1MC4 LINE L1 6612 6700 -1342 234 250 22 43 chr6 134991114 134991206 -54288348 - L1MC4 LINE L1 -1340 6702 6613 * 198 103 0 0 chr6 134991213 134991242 -54288312 + (TA)n Simple_repeat Simple_repeat 1 29 0 5147 222 41 22 chr6 134991243 134992894 -54286660 - L1MB7 LINE L1 -648 5530 3846 741 290 86 37 chr6 134992910 134993365 -54286189 - L1MEc LINE L1 -1830 4385 3909 4337 116 5 11 chr6 134993366 134994029 -54285525 + L1PB1 LINE L1 5491 6149 -2 22 0 0 0 chr6 134994029 134994051 -54285503 + AT_rich Low_complexity Low_complexity 1 22 0 1828 286 94 22 chr6 134994342 134995651 -54283903 - L1MEc LINE L1 -2304 3911 2698 2275 36 0 11 chr6 134995651 134995925 -54283629 + AluY SINE Alu 30 300 -11 1828 286 94 22 chr6 134995925 134997304 -54282250 - L1MEc LINE L1 -3517 2698 1010 * 4580 213 26 14 chr6 134997303 134998343 -54281211 - L1MC2 LINE L1 -8 6336 5284 1639 176 17 3 chr6 134998432 134998721 -54280833 + MER7A DNA MER2_type 56 346 0 945 221 35 25 chr6 134998721 134999006 -54280548 - L1MC2 LINE L1 -878 5268 4981 2167 306 50 21 chr6 134999078 135000008 -54279546 - L1MEc LINE L1 -5403 993 37 1904 201 6 6 chr6 135001048 135001411 -54278143 - MLT1A1 LTR MaLR -2 363 1 202 378 42 26 chr6 135002271 135002464 -54277090 + L2 LINE L2 3026 3221 -92 671 266 59 41 chr6 135003280 135003618 -54275936 + L1ME1 LINE L1 5818 6161 -5 1267 260 100 23 chr6 135003629 135004893 -54274661 + L1ME LINE L1 4377 5818 -346 2023 143 0 3 chr6 135004939 135005240 -54274314 - AluSq SINE Alu -11 302 3 255 300 130 25 chr6 135005439 135005716 -54273838 + L1M4 LINE L1 2723 3028 -3118 419 145 87 0 chr6 135006093 135006162 -54273392 + Tigger5 DNA MER2_type 2249 2323 0 463 210 171 92 chr6 135006174 135006502 -54273052 - L1ME3A LINE L1 -6 6164 5811 316 268 41 0 chr6 135006504 135006601 -54272953 - L1ME3A LINE L1 -386 5784 5684 2182 114 10 0 chr6 135006729 135007036 -54272518 - AluSq SINE Alu -3 310 1 478 256 0 75 chr6 135007491 135007651 -54271903 - L1ME3A LINE L1 -481 5681 5534 2452 102 13 29 chr6 135007733 135007765 -54271789 + THE1C LTR MaLR 1 32 -343 2214 93 20 3 chr6 135007765 135008065 -54271489 - AluSx SINE Alu -7 305 1 2452 102 13 29 chr6 135008065 135008413 -54271141 + THE1C LTR MaLR 32 375 0 23 33 0 0 chr6 135008446 135008476 -54271078 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr6 135008750 135008779 -54270775 + AT_rich Low_complexity Low_complexity 1 29 0 4804 243 84 48 chr6 135008858 135009107 -54270447 - L1M4c LINE L1 -4190 2456 2217 180 111 0 0 chr6 135009107 135009134 -54270420 + (CATATA)n Simple_repeat Simple_repeat 3 29 0 2194 127 19 25 chr6 135009139 135009501 -54270053 - L1PA12 LINE L1 -14 6154 5795 4804 243 84 48 chr6 135009501 135011552 -54268002 - L1M4c LINE L1 -4432 2214 1 1466 208 63 74 chr6 135011555 135011949 -54267605 - MLT1B LTR MaLR 0 390 1 320 333 12 24 chr6 135012140 135012308 -54267246 + L1M4 LINE L1 4029 4194 -1952 347 285 54 8 chr6 135012877 135013007 -54266547 + HAL1 LINE L1 1549 1684 -823 343 342 160 32 chr6 135013070 135013351 -54266203 + HAL1 LINE L1 1800 2116 -391 1150 231 0 0 chr6 135013539 135013755 -54265799 + MSTD LTR MaLR 181 396 0 207 349 0 0 chr6 135014488 135014554 -54265000 - L3 LINE CR1 -206 1371 1306 7586 24 5 1 chr6 135014618 135015881 -54263673 + L1PA3 LINE L1 4885 6150 -5 551 278 35 75 chr6 135018021 135018073 -54261481 - MIR SINE MIR -17 245 192 1867 162 10 31 chr6 135018073 135018456 -54261098 + THE1C LTR MaLR 1 375 0 551 278 35 75 chr6 135018456 135018630 -54260924 - MIR SINE MIR -70 192 28 856 229 102 60 chr6 135018672 135018986 -54260568 - MLT2C1 LTR ERVL -65 332 6 189 107 0 0 chr6 135019608 135019636 -54259918 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 3077 169 13 20 chr6 135020335 135021367 -54258187 + L1P5 LINE L1 4761 5791 -365 207 139 0 0 chr6 135021367 135021403 -54258151 + (TA)n Simple_repeat Simple_repeat 1 36 0 238 180 0 20 chr6 135021437 135021487 -54258067 - L1MC4 LINE L1 -1336 6706 6658 921 154 50 16 chr6 135021522 135021704 -54257850 - L1PB4 LINE L1 -193 5963 5776 2428 47 0 13 chr6 135021921 135022220 -54257334 + AluY SINE Alu 1 295 -16 2246 102 0 0 chr6 135022950 135023245 -54256309 + AluSx SINE Alu 1 295 -17 200 315 46 106 chr6 135023935 135024284 -54255270 + L2 LINE L2 2343 2670 -644 595 309 106 35 chr6 135025848 135026412 -54253142 + L1M4 LINE L1 2596 3199 -2947 265 188 0 58 chr6 135026527 135026596 -54252958 + L1M4 LINE L1 4188 4252 -1894 26 0 0 0 chr6 135028723 135028749 -54250805 + AT_rich Low_complexity Low_complexity 1 26 0 344 272 9 0 chr6 135029201 135029315 -54250239 + L1M4 LINE L1 4496 4610 -1536 1669 179 0 25 chr6 135029594 135029919 -54249635 + THE1C LTR MaLR 1 317 -58 232 154 0 0 chr6 135029937 135029976 -54249578 - THE1B LTR MaLR -60 304 266 761 293 46 36 chr6 135030121 135030401 -54249153 + MLT1I LTR MaLR 103 385 -24 365 293 23 88 chr6 135031503 135031718 -54247836 - L1ME3A LINE L1 0 6170 5970 2234 102 0 0 chr6 135031813 135032106 -54247448 - AluSq SINE Alu -18 295 3 436 310 98 28 chr6 135032120 135032699 -54246855 - L1ME3A LINE L1 -238 5932 5293 * 710 280 111 74 chr6 135032696 135034217 -54245337 - L1ME3A LINE L1 -1197 4949 3373 1421 261 73 56 chr6 135034236 135034754 -54244800 + L1M4 LINE L1 18 544 -5998 8342 180 37 51 chr6 135034755 135037149 -54242405 + L1MA8 LINE L1 3069 5448 -2117 8060 91 8 2 chr6 135037150 135039089 -54240465 + L1PA7 LINE L1 4205 6151 -3 2881 178 14 28 chr6 135039100 135039674 -54239880 + L1MA8 LINE L1 6931 7496 -214 785 193 35 10 chr6 135039740 135039942 -54239612 + L1MA8 LINE L1 7500 7706 -4 23 54 0 0 chr6 135039973 135040010 -54239544 + AT_rich Low_complexity Low_complexity 1 37 0 560 71 0 0 chr6 135041423 135041508 -54238046 - Alu SINE Alu 0 312 228 23 0 0 0 chr6 135041923 135041946 -54237608 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr6 135043002 135043041 -54236513 + AT_rich Low_complexity Low_complexity 1 39 0 319 400 32 0 chr6 135043092 135043282 -54236272 - HAL1b LINE L1 -621 727 532 258 230 60 40 chr6 135043934 135044004 -54235550 - MLT1L LTR MaLR -2 613 539 1978 156 91 16 chr6 135044004 135044389 -54235165 + MLT2D LTR ERVL 1 414 0 258 230 60 40 chr6 135044389 135044418 -54235136 - MLT1L LTR MaLR -76 539 512 1032 179 19 0 chr6 135045059 135045271 -54234283 - L1MA4 LINE L1 -5 6295 6080 22 0 0 0 chr6 135045655 135045677 -54233877 + AT_rich Low_complexity Low_complexity 1 22 0 41 36 0 0 chr6 135046394 135046449 -54233105 + AT_rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr6 135046646 135046674 -54232880 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr6 135046769 135046797 -54232757 + AT_rich Low_complexity Low_complexity 1 28 0 389 356 71 29 chr6 135046951 135047330 -54232224 + L1ME4a LINE L1 5476 5870 -251 5928 133 68 69 chr6 135047365 135048254 -54231300 + Tigger3b DNA MER2_type 1 890 -2138 2066 162 31 17 chr6 135048254 135048613 -54230941 + THE1B LTR MaLR 1 364 0 5928 133 68 69 chr6 135048613 135048954 -54230600 + Tigger3b DNA MER2_type 890 1230 -1 22 0 0 0 chr6 135048991 135049013 -54230541 + AT_rich Low_complexity Low_complexity 1 22 0 2115 96 0 34 chr6 135049907 135050200 -54229354 - AluY SINE Alu -14 297 15 24 53 0 0 chr6 135050298 135050336 -54229218 + AT_rich Low_complexity Low_complexity 1 38 0 35 41 0 0 chr6 135050474 135050523 -54229031 + AT_rich Low_complexity Low_complexity 1 49 0 235 176 55 121 chr6 135051282 135051373 -54228181 - MIR SINE MIR -61 201 117 24 85 0 0 chr6 135053329 135053388 -54226166 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr6 135054258 135054282 -54225272 + AT_rich Low_complexity Low_complexity 1 24 0 738 319 100 64 chr6 135056073 135056812 -54222742 + ERVL LTR ERVL 4263 5028 -736 1753 132 58 71 chr6 135056910 135057290 -54222264 - THE1C LTR MaLR 0 375 1 530 342 75 7 chr6 135057551 135057858 -54221696 + LTR33 LTR ERVL 188 515 -6 828 289 71 26 chr6 135058340 135058651 -54220903 + MSTD LTR MaLR 1 325 -71 2052 266 47 39 chr6 135058654 135059292 -54220262 + MSTD-int LTR MaLR 1090 1732 -3 1601 217 50 21 chr6 135059293 135059676 -54219878 + MSTD LTR MaLR 1 394 -2 21 0 0 0 chr6 135060114 135060135 -54219419 + AT_rich Low_complexity Low_complexity 1 21 0 240 153 14 42 chr6 135060250 135060322 -54219232 + T-rich Low_complexity Low_complexity 1 70 0 433 282 40 37 chr6 135060322 135060620 -54218934 - L1MDb LINE L1 -2164 4242 3944 307 209 55 11 chr6 135060665 135060756 -54218798 - L1MDb LINE L1 -4012 2575 2481 1717 240 116 48 chr6 135060759 135060788 -54218766 - L1MDb LINE L1 -4656 1750 1724 2094 145 27 33 chr6 135060788 135061154 -54218400 - THE1B LTR MaLR 0 364 1 1717 240 116 48 chr6 135061154 135062083 -54217471 - L1MDb LINE L1 -4682 1724 775 237 329 35 0 chr6 135062199 135062342 -54217212 + L1ME LINE L1 5547 5694 -427 34582 42 120 5 chr6 135062926 135068425 -54211129 + L1PA4 LINE L1 1 6152 -3 223 186 0 0 chr6 135068574 135068617 -54210937 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1960 207 13 28 chr6 135068820 135069279 -54210275 - L1MA8 LINE L1 -6 6285 5834 267 245 21 85 chr6 135069753 135069847 -54209707 - MLT1J LTR MaLR -325 186 99 257 236 0 18 chr6 135069920 135069975 -54209579 - MLT1J LTR MaLR -457 54 1 429 338 29 45 chr6 135070610 135070921 -54208633 + MLT1L LTR MaLR 97 402 -213 378 0 0 0 chr6 135072234 135072276 -54207278 + (TG)n Simple_repeat Simple_repeat 1 42 0 227 31 31 0 chr6 135072276 135072308 -54207246 + (GA)n Simple_repeat Simple_repeat 2 34 0 286 343 78 22 chr6 135072359 135072630 -54206924 - MLT1J1 LTR MaLR -137 309 24 22 70 0 0 chr6 135073052 135073095 -54206459 + AT_rich Low_complexity Low_complexity 1 43 0 387 0 0 0 chr6 135073461 135073504 -54206050 + (CA)n Simple_repeat Simple_repeat 1 43 0 314 102 41 0 chr6 135074105 135074154 -54205400 - MER116 DNA Mariner 0 80 30 2363 242 111 27 chr6 135074208 135075570 -54203984 - L1ME1 LINE L1 0 6149 4663 728 316 90 38 chr6 135075578 135076311 -54203243 - L1ME1 LINE L1 -5003 1116 346 267 265 0 0 chr6 135077167 135077235 -54202319 + CT-rich Low_complexity Low_complexity 3 70 0 248 303 165 44 chr6 135077319 135077731 -54201823 + L2 LINE L2 1030 1491 -1823 201 175 0 25 chr6 135077971 135078011 -54201543 + T-rich Low_complexity Low_complexity 2 40 0 441 314 88 57 chr6 135078079 135078375 -54201179 + L2 LINE L2 1764 2068 -1246 2961 102 0 11 chr6 135078439 135078889 -54200665 - L1PA8 LINE L1 -5 6167 5723 542 320 78 51 chr6 135079118 135079527 -54200027 + HAL1b LINE L1 57 476 -872 482 299 42 73 chr6 135079571 135079956 -54199598 + HAL1b LINE L1 547 919 -429 3229 129 21 0 chr6 135081635 135082114 -54197440 - MER1A DNA MER1_type 0 529 41 21 36 0 0 chr6 135082261 135082289 -54197265 + AT_rich Low_complexity Low_complexity 1 28 0 886 327 103 26 chr6 135082437 135083435 -54196119 + L1MC4a LINE L1 3671 4751 -1395 996 263 116 31 chr6 135083756 135084378 -54195176 + L1MC4a LINE L1 5270 5477 -882 29 0 0 0 chr6 135084637 135084666 -54194888 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr6 135085105 135085127 -54194427 + AT_rich Low_complexity Low_complexity 1 22 0 486 282 122 24 chr6 135085427 135085640 -54193914 - MIR SINE MIR -26 236 3 1714 202 20 9 chr6 135086022 135086364 -54193190 - MER7A DNA MER2_type -2 344 1 1418 183 36 46 chr6 135086689 135086995 -54192559 - AluJb SINE Alu -7 305 3 386 346 61 26 chr6 135087034 135087265 -54192289 - L3 LINE CR1 -65 1512 1274 231 231 19 0 chr6 135087286 135087338 -54192216 + MLT1H LTR MaLR 40 92 -457 870 274 84 46 chr6 135087338 135087453 -54192101 - MLT2F LTR ERVL -2 661 552 1051 192 201 41 chr6 135087453 135087822 -54191732 - MSTC LTR MaLR 0 428 1 870 274 84 46 chr6 135087822 135088074 -54191480 - MLT2F LTR ERVL -111 552 280 1715 276 50 8 chr6 135088098 135088577 -54190977 + LTR40a LTR ERVL 21 519 0 732 291 44 55 chr6 135088587 135088862 -54190692 - MLT2F LTR ERVL -391 272 1 1147 271 61 65 chr6 135088901 135089181 -54190373 + LTR53 LTR ERVL 1 280 -239 2278 173 47 16 chr6 135089181 135089667 -54189887 + LTR22 LTR ERVK 5 505 -4 1147 271 61 65 chr6 135089667 135089907 -54189647 + LTR53 LTR ERVL 280 519 0 839 263 131 46 chr6 135089907 135089985 -54189569 + MLT1H LTR MaLR 127 197 -352 1423 205 18 58 chr6 135089985 135090365 -54189189 + MLT1A1 LTR MaLR 1 365 0 839 263 131 46 chr6 135090365 135090674 -54188880 + MLT1H LTR MaLR 197 547 -2 258 295 13 13 chr6 135090763 135090841 -54188713 + MIR SINE MIR 17 94 -114 28 29 0 0 chr6 135091763 135091798 -54187756 + AT_rich Low_complexity Low_complexity 1 35 0 347 343 80 11 chr6 135092898 135093073 -54186481 - MIR3 SINE MIR -3 205 19 1886 153 13 81 chr6 135093807 135094200 -54185354 + MER47A DNA MER2_type 1 366 0 13129 199 54 25 chr6 135094420 135100794 -54178760 + L1PB1 LINE L1 114 6867 0 29 78 0 0 chr6 135100794 135100858 -54178696 + AT_rich Low_complexity Low_complexity 1 64 0 5699 132 41 7 chr6 135101372 135102317 -54177237 - Tigger1 DNA MER2_type -1 2417 1441 12456 25 5 4 chr6 135102317 135103820 -54175734 - L1P LINE L1 -1289 4857 3353 295 289 51 77 chr6 135103821 135103977 -54175577 + MIR SINE MIR 61 212 -50 8252 156 21 14 chr6 135104171 135105625 -54173929 - Tigger1 DNA MER2_type -954 1464 1 4793 92 5 0 chr6 135107203 135107875 -54171679 - L1PA8 LINE L1 -1 6171 5497 1142 104 60 0 chr6 135107880 135108063 -54171491 + L1PA8 LINE L1 5326 5519 -612 429 284 118 38 chr6 135109289 135109500 -54170054 - MIR SINE MIR -10 252 25 26 0 0 0 chr6 135109987 135110013 -54169541 + AT_rich Low_complexity Low_complexity 1 26 0 209 371 56 21 chr6 135110119 135110262 -54169292 + MIR SINE MIR 29 176 -86 23 0 0 0 chr6 135110308 135110331 -54169223 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr6 135110361 135110407 -54169147 + AT_rich Low_complexity Low_complexity 1 46 0 37 62 0 0 chr6 135110888 135110953 -54168601 + AT_rich Low_complexity Low_complexity 1 65 0 1578 235 39 2 chr6 135112300 135112709 -54166845 + L1MA4 LINE L1 5868 6291 -9 307 279 18 61 chr6 135112892 135113057 -54166497 + MER103 DNA DNA 4 161 -5 1007 214 116 23 chr6 135114165 135114468 -54165086 + MER87 LTR ERV1 211 541 0 2472 243 78 30 chr6 135115058 135115866 -54163688 - L1ME1 LINE L1 -5 6230 5384 3968 277 59 23 chr6 135115874 135116448 -54163106 - L1ME1 LINE L1 -4583 1813 1261 198 103 0 0 chr6 135116448 135116477 -54163077 + (TA)n Simple_repeat Simple_repeat 1 29 0 3968 277 59 23 chr6 135116477 135117619 -54161935 - L1ME1 LINE L1 -5135 1261 35 300 200 0 0 chr6 135118734 135118799 -54160755 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 453 278 96 10 chr6 135120241 135120505 -54159049 - LTR33A LTR ERVL 0 523 328 254 364 8 0 chr6 135122320 135122438 -54157116 - LTR33 LTR ERVL -389 132 14 7419 130 4 2 chr6 135122552 135123713 -54155841 - L1P LINE L1 -923 5223 4060 5967 86 2 9 chr6 135123710 135124528 -54155026 + L1PA8A LINE L1 5319 6131 0 * 28 0 0 0 chr6 135124590 135124618 -54154936 + AT_rich Low_complexity Low_complexity 1 28 0 274 217 56 21 chr6 135124733 135124876 -54154678 + T-rich Low_complexity Low_complexity 4 151 0 21 0 0 0 chr6 135125246 135125267 -54154287 + AT_rich Low_complexity Low_complexity 1 21 0 274 336 40 16 chr6 135125287 135125412 -54154142 + MER5B DNA MER1_type 10 137 -41 890 117 0 37 chr6 135125628 135125791 -54153763 + L1MA4 LINE L1 6138 6294 -6 246 128 0 0 chr6 135126771 135126810 -54152744 + (CA)n Simple_repeat Simple_repeat 1 39 0 180 0 0 0 chr6 135127498 135127518 -54152036 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1595 225 61 59 chr6 135127876 135128419 -54151135 - LTR68 LTR ERV1 -24 716 173 2198 125 0 3 chr6 135128545 135128857 -54150697 + AluSx SINE Alu 2 312 0 5839 122 12 0 chr6 135128857 135129848 -54149706 + L1PA14 LINE L1 5158 6160 -1 984 151 38 72 chr6 135129924 135130215 -54149339 - L1MA7 LINE L1 -5 7307 7027 12264 204 47 17 chr6 135130226 135133451 -54146103 - L1MA7 LINE L1 -743 6424 3255 21 36 0 0 chr6 135133461 135133489 -54146065 + AT_rich Low_complexity Low_complexity 1 28 0 2329 282 46 27 chr6 135133549 135133868 -54145686 - L1MA7 LINE L1 -4180 2988 2677 462 101 0 0 chr6 135133868 135133937 -54145617 + (TTG)n Simple_repeat Simple_repeat 1 69 0 2329 282 46 27 chr6 135133937 135135027 -54144527 - L1MA7 LINE L1 -4491 2677 1545 314 268 152 9 chr6 135137118 135137230 -54142324 + L2 LINE L2 3186 3313 0 1486 205 54 3 chr6 135137387 135137428 -54142126 - MLT2D LTR ERVL 0 414 377 588 40 0 0 chr6 135137428 135137503 -54142051 + (TG)n Simple_repeat Simple_repeat 2 76 0 1486 205 54 3 chr6 135137503 135137759 -54141795 - MLT2D LTR ERVL -37 377 102 2868 191 18 2 chr6 135137760 135138269 -54141285 + L1PA13 LINE L1 1 517 -7064 1338 223 8 16 chr6 135138241 135138497 -54141057 + L1PA13 LINE L1 434 687 -6894 * 7789 161 14 40 chr6 135138514 135140309 -54139245 + L1PA13 LINE L1 5218 6933 -668 1315 123 150 62 chr6 135140309 135140632 -54138922 + AluSx SINE Alu 1 346 0 7789 161 14 40 chr6 135140632 135141280 -54138274 + L1PA13 LINE L1 6933 7597 -4 630 167 61 8 chr6 135141384 135141516 -54138038 - MLT2D LTR ERVL -323 141 3 26 0 0 0 chr6 135142992 135143018 -54136536 + AT_rich Low_complexity Low_complexity 1 26 0 288 0 0 0 chr6 135143044 135143076 -54136478 + (CA)n Simple_repeat Simple_repeat 1 32 0 22 80 0 0 chr6 135143078 135143128 -54136426 + AT_rich Low_complexity Low_complexity 1 50 0 26 30 0 0 chr6 135143629 135143662 -54135892 + AT_rich Low_complexity Low_complexity 1 33 0 1716 126 53 0 chr6 135144376 135144676 -54134878 + AluSq SINE Alu 7 320 0 836 237 34 13 chr6 135145384 135145656 -54133898 + MLT2D LTR ERVL 1 332 -82 1751 193 81 69 chr6 135145702 135146221 -54133333 + MER65B LTR ERV1 1 525 -6 405 0 0 0 chr6 135146222 135146267 -54133287 + (TG)n Simple_repeat Simple_repeat 2 46 0 288 75 0 0 chr6 135146267 135146307 -54133247 + MLT2D LTR ERVL 515 554 0 362 316 37 0 chr6 135146571 135146707 -54132847 - MLT1J2 LTR MaLR -218 232 92 342 301 140 27 chr6 135146793 135147129 -54132425 - HAL1 LINE L1 -329 2178 1805 268 234 22 88 chr6 135147427 135147654 -54131900 - MER97c DNA MER1_type? -50 1040 829 448 197 0 18 chr6 135147854 135147984 -54131570 + MLT1E3 LTR MaLR 87 261 -393 743 249 15 41 chr6 135148032 135148229 -54131325 + MLT1E3 LTR MaLR 381 572 -52 847 36 18 18 chr6 135148231 135148343 -54131211 - L1PA10 LINE L1 -4 6164 6053 3404 141 13 13 chr6 135148345 135148943 -54130611 + L1P LINE L1 4784 5381 -765 405 131 0 0 chr6 135148944 135149005 -54130549 + MLT1E3 LTR MaLR 560 620 -4 1261 276 61 18 chr6 135149012 135149737 -54129817 + L1ME1 LINE L1 3683 4438 -1708 * 1447 185 5 13 chr6 135149715 135150041 -54129513 + L1MB1 LINE L1 5616 5938 -251 1996 153 29 36 chr6 135150042 135150455 -54129099 + L1MA9 LINE L1 5903 6312 0 1935 284 47 20 chr6 135150457 135151218 -54128336 + L1ME1 LINE L1 5301 6082 -84 2202 53 49 3 chr6 135151243 135151527 -54128027 - AluY SINE Alu -14 297 1 4677 216 36 16 chr6 135151546 135151753 -54127801 + L1PA15-16 LINE L1 1794 1995 -4854 2025 115 21 0 chr6 135151753 135152032 -54127522 + AluSx SINE Alu 1 285 -27 216 0 0 0 chr6 135152035 135152059 -54127495 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4677 216 36 16 chr6 135152059 135153119 -54126435 + L1PA15-16 LINE L1 1996 3087 -3762 4806 41 0 0 chr6 135153120 135153781 -54125773 - L1P2 LINE L1 -701 5454 4794 7905 241 24 3 chr6 135153784 135155785 -54123769 + L1PA15-16 LINE L1 3092 5133 -1716 1294 251 34 0 chr6 135155792 135156119 -54123435 + L1PA15 LINE L1 2192 2529 -3617 4707 155 44 11 chr6 135156135 135157809 -54121745 + L1PA15 LINE L1 4472 6165 0 31 0 0 0 chr6 135157938 135157969 -54121585 + AT_rich Low_complexity Low_complexity 1 31 0 2303 116 0 0 chr6 135158111 135158422 -54121132 + AluSp SINE Alu 1 311 -2 670 255 103 10 chr6 135158527 135158849 -54120705 - MER97c DNA MER1_type? -523 567 197 469 186 81 16 chr6 135159010 135159134 -54120420 - MER97b DNA MER1_type? -918 135 4 367 305 19 0 chr6 135159352 135159457 -54120097 - LTR16C LTR ERVL 0 491 385 861 285 151 16 chr6 135159459 135159890 -54119664 + LTR16C LTR ERVL 3 491 0 754 343 37 19 chr6 135160017 135160338 -54119216 - LTR16C LTR ERVL -102 389 63 1471 220 68 61 chr6 135163207 135163666 -54115888 - MLT1C LTR MaLR 0 467 6 354 321 103 84 chr6 135164287 135165598 -54113956 - L2 LINE L2 -24 3248 1917 31 68 0 0 chr6 135166247 135166306 -54113248 + AT_rich Low_complexity Low_complexity 1 59 0 2014 239 28 8 chr6 135166652 135167264 -54112290 - L1M4 LINE L1 -2976 3170 2547 315 306 197 20 chr6 135167460 135167607 -54111947 + MER5A DNA MER1_type 9 181 -8 408 320 35 25 chr6 135167636 135167833 -54111721 + L2 LINE L2 3114 3312 -1 266 360 20 13 chr6 135167921 135168071 -54111483 + L2 LINE L2 2831 2981 -291 341 237 129 29 chr6 135168322 135168461 -54111093 - L1 LINE L1 -2214 3932 3780 1740 188 43 3 chr6 135168467 135168791 -54110763 - MER7A DNA MER2_type -10 336 2 393 309 79 28 chr6 135169073 135169290 -54110264 + MIR SINE MIR 37 262 0 588 262 57 19 chr6 135170559 135170769 -54108785 - MLT1L LTR MaLR 0 615 398 397 279 0 19 chr6 135170869 135170973 -54108581 - MLT1L LTR MaLR -349 266 165 21 0 0 0 chr6 135171391 135171412 -54108142 + AT_rich Low_complexity Low_complexity 1 21 0 2145 131 3 6 chr6 135171598 135171911 -54107643 + AluSx SINE Alu 1 312 0 2072 141 0 0 chr6 135171956 135172260 -54107294 + AluSx SINE Alu 1 304 -8 1411 240 61 78 chr6 135172781 135173522 -54106032 + L1M4 LINE L1 4261 4988 -1158 2076 134 3 0 chr6 135173560 135173858 -54105696 - AluSx SINE Alu -13 299 1 22 35 0 0 chr6 135173905 135173934 -54105620 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr6 135173964 135173993 -54105561 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr6 135174096 135174141 -54105413 + AT_rich Low_complexity Low_complexity 1 45 0 13053 199 40 34 chr6 135174204 135174805 -54104749 + L1M1 LINE L1 2 598 -6251 1658 155 44 72 chr6 135174805 135175191 -54104363 - THE1C LTR MaLR 0 375 1 9105 134 61 7 chr6 135175191 135176690 -54102864 - THE1C-int LTR MaLR 0 1580 1 1496 171 54 85 chr6 135176690 135177077 -54102477 - THE1C LTR MaLR 0 375 1 13053 199 40 34 chr6 135177077 135178584 -54100970 + L1M1 LINE L1 598 2135 -4714 1650 148 81 34 chr6 135178584 135178942 -54100612 + THE1C LTR MaLR 1 375 0 13053 199 40 34 chr6 135178942 135179664 -54099890 + L1M1 LINE L1 2135 2851 -3998 2677 188 27 14 chr6 135179663 135180582 -54098972 + L1M1 LINE L1 5451 6389 -616 * 634 268 1 7 chr6 135180583 135180763 -54098791 + L1M2 LINE L1 1 530 -6679 809 204 15 15 chr6 135180776 135180972 -54098582 - L1 LINE L1 -921 5225 5030 7222 238 60 76 chr6 135180973 135183470 -54096084 + L1M2 LINE L1 553 3091 -4117 1724 244 31 17 chr6 135183470 135183888 -54095666 - MSTB LTR MaLR -2 424 1 7222 238 60 76 chr6 135183888 135184133 -54095421 + L1M2 LINE L1 3091 3245 -3963 2575 10 0 3 chr6 135184133 135184448 -54095106 - AluYb8 SINE Alu 0 314 1 7222 238 60 76 chr6 135184448 135184550 -54095004 + L1M2 LINE L1 3245 3347 -3861 4206 150 13 0 chr6 135184550 135185386 -54094168 + L1MA3 LINE L1 5105 5949 -356 1029 212 147 56 chr6 135187398 135187738 -54091816 + MLT1A2 LTR MaLR 4 374 0 216 0 0 0 chr6 135187843 135187867 -54091687 + (TA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr6 135189882 135189903 -54089651 + AT_rich Low_complexity Low_complexity 1 21 0 291 296 64 32 chr6 135191401 135191526 -54088028 + MIR SINE MIR 3 131 -131 5739 90 24 1 chr6 135191606 135192436 -54087118 - L1PA7 LINE L1 -1088 5058 4210 6500 81 7 0 chr6 135192436 135193511 -54086043 + L1PA7 LINE L1 5057 6140 -14 241 380 41 0 chr6 135193557 135193678 -54085876 + L2 LINE L2 217 342 -2972 2039 306 90 53 chr6 135193725 135194829 -54084725 + L2 LINE L2 1718 2861 -453 5777 146 29 5 chr6 135195868 135196896 -54082658 + L1MA4 LINE L1 5237 6289 -11 187 295 53 42 chr6 135197411 135197506 -54082048 + L3 LINE CR1 1361 1456 -121 277 339 70 26 chr6 135197823 135198050 -54081504 - L2 LINE L2 -928 2386 2150 1995 132 10 7 chr6 135198050 135198360 -54081194 + AluSx SINE Alu 1 311 -1 12025 105 24 2 chr6 135198362 135200454 -54079100 + L1P3 LINE L1 3505 5639 -533 696 370 41 11 chr6 135202231 135202696 -54076858 - LTR33 LTR ERVL -28 493 15 553 100 0 0 chr6 135203063 135203143 -54076411 - MADE1 DNA Mariner 0 80 1 336 102 0 0 chr6 135203193 135203242 -54076312 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 298 207 30 30 chr6 135203212 135203347 -54076207 + GA-rich Low_complexity Low_complexity 5 139 0 * 2707 141 21 8 chr6 135203348 135203393 -54076161 + L1P4 LINE L1 5318 5361 -800 2355 138 13 0 chr6 135203393 135203771 -54075783 - L1PA13 LINE L1 -13 6150 5768 2707 141 21 8 chr6 135203771 135204193 -54075361 + L1PA13 LINE L1 5361 5791 -370 21 0 0 0 chr6 135204197 135204218 -54075336 + AT_rich Low_complexity Low_complexity 1 21 0 254 368 97 38 chr6 135204226 135204650 -54074904 + L2 LINE L2 2373 2821 -493 258 340 75 7 chr6 135205379 135205526 -54074028 - MARNA DNA Mariner -131 455 299 701 157 60 42 chr6 135205684 135205886 -54073668 - MLT1B LTR MaLR -191 183 1 21 0 0 0 chr6 135206701 135206722 -54072832 + AT_rich Low_complexity Low_complexity 1 21 0 406 357 38 19 chr6 135206794 135207057 -54072497 + L2 LINE L2 2051 2318 -996 785 278 102 19 chr6 135208233 135208665 -54070889 - L1MCc LINE L1 -2045 4896 4429 609 141 23 119 chr6 135208711 135208888 -54070666 - L1MA4 LINE L1 -7 6293 6134 7593 20 0 0 chr6 135208889 135209922 -54069632 - L1PA4 LINE L1 -4 6151 5118 10642 29 2 8 chr6 135209922 135211217 -54068337 + L1PA4 LINE L1 3807 5094 -1052 464 156 0 0 chr6 135211219 135211296 -54068258 - L1MA4A LINE L1 -137 6166 6090 * 865 271 56 55 chr6 135211291 135211877 -54067677 - L1MCc LINE L1 -2581 4360 3774 576 267 109 37 chr6 135211869 135212192 -54067362 - L1MCc LINE L1 -4766 2175 1877 * 2127 106 26 57 chr6 135212192 135212578 -54066976 - THE1C LTR MaLR 0 375 2 576 267 109 37 chr6 135212578 135213109 -54066445 - L1MCc LINE L1 -5064 1877 1253 310 299 37 22 chr6 135213699 135213833 -54065721 - L1MCc LINE L1 -6034 389 254 2078 141 0 0 chr6 135214437 135214735 -54064819 - AluSx SINE Alu -14 298 1 21 0 0 0 chr6 135214746 135214767 -54064787 + AT_rich Low_complexity Low_complexity 1 21 0 28 91 0 0 chr6 135215440 135215517 -54064037 + AT_rich Low_complexity Low_complexity 1 77 0 12858 162 32 0 chr6 135215653 135218960 -54060594 + L1PA13 LINE L1 2776 6144 -19 1087 174 0 75 chr6 135219229 135219470 -54060084 + AluJb SINE Alu 88 310 -2 271 198 12 123 chr6 135219861 135219942 -54059612 - MER33 DNA MER1_type -251 73 2 2082 75 21 14 chr6 135220205 135220528 -54059026 + AluSp SINE Alu 1 325 0 417 360 21 16 chr6 135220589 135220775 -54058779 - MER5A DNA MER1_type 0 189 3 371 276 73 52 chr6 135220968 135221160 -54058394 - HAL1 LINE L1 -1429 1078 883 21 57 0 0 chr6 135221724 135221759 -54057795 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 135222704 135222732 -54056822 + AT_rich Low_complexity Low_complexity 1 28 0 562 261 19 13 chr6 135222732 135222889 -54056665 + L1MDa LINE L1 16 173 -6367 543 310 70 14 chr6 135222906 135223119 -54056435 - L1MDa LINE L1 -5554 986 762 * 741 221 98 101 chr6 135223117 135223443 -54056111 + L1MDa LINE L1 170 494 -6046 1435 180 116 3 chr6 135223461 135223772 -54055782 + MER52A LTR ERV1 1410 1755 0 940 290 107 14 chr6 135223779 135224124 -54055430 + L1MDa LINE L1 702 1078 -5462 41395 63 4 1 chr6 135224130 135230256 -54049298 + L1PA5 LINE L1 2 6148 -6 4495 238 89 21 chr6 135230252 135232667 -54046887 + L1MDa LINE L1 1066 3734 -2806 * 216 67 0 0 chr6 135232667 135232697 -54046857 + (CA)n Simple_repeat Simple_repeat 2 31 0 4495 238 89 21 chr6 135232697 135233318 -54046236 + L1MDa LINE L1 3734 4311 -2229 2251 274 18 31 chr6 135233611 135234505 -54045049 + L1MDa LINE L1 4360 5241 -1299 26 74 0 0 chr6 135235027 135235081 -54044473 + AT_rich Low_complexity Low_complexity 1 54 0 241 376 91 38 chr6 135237575 135237971 -54041583 - L3b LINE CR1 -41 1542 1126 237 320 177 0 chr6 135238620 135238767 -54040787 + L1MEc LINE L1 15 187 -6209 466 269 60 0 chr6 135238967 135239116 -54040438 + L1MEc LINE L1 1636 1793 -4603 26 30 0 0 chr6 135241883 135241916 -54037638 + AT_rich Low_complexity Low_complexity 1 33 0 642 319 17 33 chr6 135242075 135242316 -54037238 + MIR SINE MIR 23 259 -3 580 235 48 5 chr6 135242793 135242980 -54036574 - L1M4 LINE L1 -3646 2998 2804 452 286 88 0 chr6 135242972 135243119 -54036435 - L1M4 LINE L1 -4836 1810 1651 * 2026 269 22 2 chr6 135243121 135243585 -54035969 - MER70B LTR ERVL 0 578 106 302 264 0 14 chr6 135243596 135243668 -54035886 - MER70A LTR ERVL -310 162 92 2331 148 12 10 chr6 135243669 135244069 -54035485 - L1PA11 LINE L1 -896 5250 4850 5604 113 53 5 chr6 135244078 135244956 -54034598 + L1PA11 LINE L1 5254 6174 0 558 198 0 0 chr6 135244968 135245064 -54034490 - MER70A LTR ERVL -376 96 1 1533 259 26 30 chr6 135245064 135245640 -54033914 - L1M4 LINE L1 -4887 1655 1082 22 0 0 0 chr6 135246073 135246095 -54033459 + AT_rich Low_complexity Low_complexity 1 22 0 1532 92 0 31 chr6 135246764 135246993 -54032561 + L1PA5 LINE L1 5931 6152 -2 38 0 0 0 chr6 135247309 135247347 -54032207 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 135247481 135247502 -54032052 + AT_rich Low_complexity Low_complexity 1 21 0 502 239 18 0 chr6 135247557 135247666 -54031888 - Tigger3(Golem) DNA MER2_type 0 3029 2919 25 0 0 0 chr6 135247670 135247695 -54031859 + AT_rich Low_complexity Low_complexity 1 25 0 417 161 25 37 chr6 135247804 135247885 -54031669 - Tigger3(Golem) DNA MER2_type -2949 80 1 1802 158 31 0 chr6 135247951 135248243 -54031311 - AluJb SINE Alu -11 301 1 21 0 0 0 chr6 135248245 135248266 -54031288 + AT_rich Low_complexity Low_complexity 1 21 0 719 217 30 49 chr6 135248324 135248527 -54031027 + Charlie1a DNA MER1_type 13 211 -1244 338 159 14 0 chr6 135248527 135248596 -54030958 + (TA)n Simple_repeat Simple_repeat 1 70 0 2462 227 32 17 chr6 135248600 135249619 -54029935 - L1MC/D LINE L1 -576 6177 5149 * 2533 244 64 103 chr6 135249610 135250263 -54029291 - L1MDa LINE L1 -1980 4560 3883 891 210 0 0 chr6 135250263 135250430 -54029124 - FRAM SINE Alu -8 168 2 2533 244 64 103 chr6 135250430 135250608 -54028946 - L1MDa LINE L1 -2657 3883 3699 2024 115 4 0 chr6 135250608 135250886 -54028668 - AluSg SINE Alu -31 279 1 2533 244 64 103 chr6 135250886 135252052 -54027502 - L1MDa LINE L1 -2841 3699 2514 2172 99 3 0 chr6 135252052 135252392 -54027162 - AluSp SINE Alu 0 341 1 2533 244 64 103 chr6 135252392 135252691 -54026863 - L1MDa LINE L1 -4026 2514 2205 352 208 0 0 chr6 135252688 135252760 -54026794 - L1MB8 LINE L1 -263 5915 5844 * 284 224 24 35 chr6 135252775 135252790 -54026764 - MER46A DNA MER2_type -78 158 145 1297 180 108 36 chr6 135252790 135253124 -54026430 + MER46B DNA MER2_type 2 234 -2 1004 191 15 5 chr6 135253265 135253469 -54026085 - MLT2C2 LTR ERVL -258 206 1 2269 210 27 6 chr6 135253469 135254028 -54025526 - L1MB8 LINE L1 -409 5775 5210 742 126 0 16 chr6 135254048 135254175 -54025379 - HERVH LTR ERV1 -3873 3840 3716 615 62 0 0 chr6 135254175 135254256 -54025298 - LTR7 LTR ERV1 -369 81 1 2414 84 48 13 chr6 135254256 135254635 -54024919 - HERVH LTR ERV1 0 7713 7322 1348 121 23 9 chr6 135254633 135254848 -54024706 - HERVH LTR ERV1 -1894 5819 5602 * 4365 135 3 1 chr6 135254851 135255512 -54024042 - HERVH LTR ERV1 -2564 5149 4488 3295 123 0 6 chr6 135255514 135256019 -54023535 - HERVH LTR ERV1 -3720 3993 3492 * 19878 90 63 39 chr6 135256009 135259222 -54020332 - HERVH LTR ERV1 -4423 3290 1 3397 60 0 7 chr6 135259224 135259675 -54019879 - LTR7 LTR ERV1 -2 448 1 307 316 13 0 chr6 135259996 135260075 -54019479 + MIR3 SINE MIR 98 177 -31 1579 174 33 11 chr6 135261009 135261285 -54018269 + AluJb SINE Alu 11 292 -20 249 320 93 10 chr6 135261477 135261574 -54017980 + L2 LINE L2 3151 3255 -17 225 271 178 8 chr6 135261977 135262106 -54017448 - MIR SINE MIR -106 156 6 25 65 0 0 chr6 135262340 135262386 -54017168 + AT_rich Low_complexity Low_complexity 1 46 0 350 286 64 21 chr6 135262486 135262626 -54016928 - L1ME1 LINE L1 -5 6161 6016 882 231 33 81 chr6 135262634 135263081 -54016473 + MER52A LTR ERV1 274 1229 -141 255 297 14 97 chr6 135263343 135263488 -54016066 + MER52A LTR ERV1 1338 1470 -285 244 296 56 9 chr6 135263506 135263614 -54015940 + MER52A LTR ERV1 1643 1755 0 474 324 24 8 chr6 135263862 135264112 -54015442 - L1ME LINE L1 -4906 1636 1383 398 293 22 28 chr6 135264201 135264382 -54015172 - L1ME LINE L1 -5602 1032 853 27 0 0 0 chr6 135264567 135264594 -54014960 + AT_rich Low_complexity Low_complexity 1 27 0 672 200 0 0 chr6 135264715 135264840 -54014714 - FLAM_A SINE Alu -10 132 8 339 321 47 28 chr6 135264994 135265206 -54014348 - L1ME1 LINE L1 -281 5889 5674 22 56 0 0 chr6 135265749 135265785 -54013769 + AT_rich Low_complexity Low_complexity 1 36 0 360 240 10 0 chr6 135266043 135266147 -54013407 - L1M4 LINE L1 -2678 3468 3364 911 206 0 0 chr6 135266148 135266308 -54013246 + AluJb SINE Alu 126 285 -27 388 312 68 38 chr6 135266421 135266684 -54012870 - L1M4 LINE L1 -3016 3130 2860 4795 159 33 9 chr6 135266688 135267659 -54011895 - L1MB1 LINE L1 0 6404 5412 4570 231 127 9 chr6 135267661 135269243 -54010311 - L1MB1 LINE L1 -1567 4815 3048 2521 287 58 17 chr6 135269260 135271130 -54008424 - L1MB1 LINE L1 -3592 2790 777 1333 304 41 47 chr6 135271522 135272178 -54007376 - L1M3de LINE L1 -5205 686 1 352 318 23 28 chr6 135272210 135272427 -54007127 - L1 LINE L1 -3292 2854 2639 39 22 0 0 chr6 135272455 135272501 -54007053 + AT_rich Low_complexity Low_complexity 1 46 0 277 292 170 12 chr6 135273322 135273493 -54006061 + L2 LINE L2 3114 3311 -2 501 267 57 54 chr6 135274022 135274374 -54005180 + L1ME3A LINE L1 3587 3939 -2207 559 261 43 30 chr6 135274924 135275361 -54004193 + L1ME3A LINE L1 5603 6165 -5 958 238 25 73 chr6 135275371 135275686 -54003868 + L2 LINE L2 2445 2744 -570 1944 180 28 28 chr6 135275686 135276050 -54003504 + MLT2D LTR ERVL 1 364 -50 900 192 0 0 chr6 135276050 135276201 -54003353 + Tigger1 DNA MER2_type 1 151 -2267 * 1096 143 107 0 chr6 135276197 135276393 -54003161 + Tigger1 DNA MER2_type 2202 2418 0 889 303 119 29 chr6 135276446 135276967 -54002587 + L2 LINE L2 2744 3313 0 2094 108 0 0 chr6 135279026 135279314 -54000240 + AluSx SINE Alu 23 310 -2 24 53 0 0 chr6 135280650 135280688 -53998866 + AT_rich Low_complexity Low_complexity 1 38 0 996 184 45 0 chr6 135280688 135280889 -53998665 - MER2 DNA MER2_type -135 210 1 297 216 137 49 chr6 135281022 135281124 -53998430 - MLT1J LTR MaLR -44 467 357 35 71 0 0 chr6 135283170 135283240 -53996314 + AT_rich Low_complexity Low_complexity 1 70 0 646 214 0 14 chr6 135283481 135283621 -53995933 - FLAM_C SINE Alu -5 138 1 1573 126 6 123 chr6 135284193 135284534 -53995020 - AluSx SINE Alu 0 302 2 26 64 0 0 chr6 135284954 135285001 -53994553 + AT_rich Low_complexity Low_complexity 1 47 0 186 191 0 0 chr6 135285054 135285096 -53994458 + T-rich Low_complexity Low_complexity 1 42 0 21 71 0 0 chr6 135285438 135285480 -53994074 + AT_rich Low_complexity Low_complexity 1 42 0 2359 86 3 0 chr6 135286264 135286565 -53992989 + AluSc SINE Alu 1 302 -7 27 29 0 0 chr6 135286977 135287011 -53992543 + AT_rich Low_complexity Low_complexity 1 34 0 1541 234 44 25 chr6 135289380 135289786 -53989768 - MLT2D LTR ERVL 0 414 1 756 206 17 116 chr6 135289893 135289971 -53989583 + L1M4 LINE L1 16 100 -6442 2070 129 3 0 chr6 135289971 135290274 -53989280 - AluSq SINE Alu -9 304 1 756 206 17 116 chr6 135290274 135290496 -53989058 + L1M4 LINE L1 100 286 -6256 43675 43 1 2 chr6 135340538 135346415 -53933139 - L1PA3 LINE L1 -282 5873 3 248 215 51 25 chr6 135347187 135347266 -53932288 - MER5B DNA MER1_type -80 98 18 1326 134 62 78 chr6 135347374 135347695 -53931859 + L1MA9 LINE L1 5988 6303 -9 331 209 12 12 chr6 135347813 135347899 -53931655 + L1P LINE L1 3320 3405 -2741 410 226 122 112 chr6 135349047 135349334 -53930220 + MLT1L LTR MaLR 1 290 -325 315 0 0 0 chr6 135349832 135349867 -53929687 + (TG)n Simple_repeat Simple_repeat 1 35 0 277 284 93 31 chr6 135350314 135350476 -53929078 + L2 LINE L2 3138 3309 -4 2287 195 15 58 chr6 135350794 135351370 -53928184 + L1MB7 LINE L1 5633 6184 0 2249 151 24 44 chr6 135352058 135352211 -53927343 + L1PA16 LINE L1 5723 5878 -288 1643 126 0 47 chr6 135352211 135352465 -53927089 - AluSx SINE Alu -18 294 53 2249 151 24 44 chr6 135352465 135352761 -53926793 + L1PA16 LINE L1 5878 6163 -3 348 148 80 0 chr6 135352761 135352847 -53926707 + L1MB4 LINE L1 6086 6180 0 22 0 0 0 chr6 135352886 135352908 -53926646 + AT_rich Low_complexity Low_complexity 1 22 0 265 250 0 17 chr6 135353160 135353220 -53926334 + GA-rich Low_complexity Low_complexity 2 60 0 333 129 24 12 chr6 135354351 135354436 -53925118 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 694 282 30 38 chr6 135354897 135355159 -53924395 + MIR SINE MIR 2 261 -1 26 0 0 0 chr6 135359310 135359336 -53920218 + AT_rich Low_complexity Low_complexity 1 26 0 1763 162 126 26 chr6 135359520 135359909 -53919645 - MSTA LTR MaLR 0 428 1 9291 143 12 36 chr6 135359909 135361526 -53918028 - MSTA-int LTR MaLR 0 1580 3 1750 159 159 8 chr6 135361527 135361899 -53917655 - MSTA LTR MaLR 0 428 1 297 237 13 0 chr6 135362269 135362345 -53917209 - L1MD3 LINE L1 -485 7510 7434 327 273 39 0 chr6 135362346 135362423 -53917131 - MLT1F1 LTR MaLR -433 134 55 285 305 24 0 chr6 135362759 135362841 -53916713 + MER94 DNA DNA 4 87 -47 345 335 30 42 chr6 135363067 135363303 -53916251 + Charlie8 DNA MER1_type 5 237 -2180 472 298 6 22 chr6 135363692 135363873 -53915681 + MER5B DNA MER1_type 1 178 0 22 56 0 0 chr6 135364484 135364520 -53915034 + AT_rich Low_complexity Low_complexity 1 36 0 3235 162 2 11 chr6 135365476 135366045 -53913509 - L1PA16 LINE L1 -7 6159 5596 237 98 0 24 chr6 135366347 135366388 -53913166 - L1PA16 LINE L1 -7 6159 6120 4033 220 16 39 chr6 135366420 135367643 -53911911 - L1PA12 LINE L1 -4173 3411 2256 1095 321 27 51 chr6 135368465 135369092 -53910462 - L1PA12 LINE L1 -6174 1400 789 740 161 32 32 chr6 135370983 135371169 -53908385 + MER53 DNA DNA 1 186 -3 28 0 0 0 chr6 135372932 135372960 -53906594 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr6 135373165 135373201 -53906353 + AT_rich Low_complexity Low_complexity 1 36 0 6913 198 114 30 chr6 135374432 135376051 -53903503 + MER52A LTR ERV1 1 1755 0 238 216 0 0 chr6 135376780 135376831 -53902723 + A-rich Low_complexity Low_complexity 1 51 0 249 293 108 32 chr6 135376894 135377193 -53902361 + L1ME LINE L1 5263 5585 -577 228 349 156 28 chr6 135377267 135377697 -53901857 + L2 LINE L2 2817 3301 -12 763 296 46 0 chr6 135378615 135378855 -53900699 - MIR SINE MIR 0 262 12 213 238 59 10 chr6 135379566 135379667 -53899887 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 309 82 0 0 chr6 135379704 135379753 -53899801 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 311 91 0 0 chr6 135379764 135379808 -53899746 - L1P LINE L1 -1970 4176 4133 8438 98 9 19 chr6 135379863 135381910 -53897644 - L1PA7 LINE L1 -15 6139 4105 360 318 106 0 chr6 135382434 135382604 -53896950 + MIR SINE MIR 75 262 0 4262 190 22 34 chr6 135383069 135383207 -53896347 - L1MB1 LINE L1 0 6168 6030 2348 222 12 34 chr6 135383207 135383770 -53895784 - MLT2B3 LTR ERVL -2 552 2 4262 190 22 34 chr6 135383770 135384841 -53894713 - L1MB1 LINE L1 -138 6030 4966 21 36 0 0 chr6 135385053 135385081 -53894473 + AT_rich Low_complexity Low_complexity 1 28 0 7505 119 20 31 chr6 135385991 135387241 -53892313 - L1P LINE L1 -1775 4371 3136 1800 78 3 70 chr6 135387241 135387521 -53892033 + L1PA8A LINE L1 5867 6131 0 23 33 0 0 chr6 135388159 135388189 -53891365 + AT_rich Low_complexity Low_complexity 1 30 0 2758 28 0 0 chr6 135388353 135388670 -53890884 - AluYb8 SINE Alu -1 317 1 244 164 16 49 chr6 135388784 135388845 -53890709 - MER103 DNA DNA -7 159 101 231 174 41 8 chr6 135392935 135393056 -53886498 + (TA)n Simple_repeat Simple_repeat 1 125 0 714 264 141 82 chr6 135393492 135394038 -53885516 + MLT1G LTR MaLR 13 590 0 2251 68 0 19 chr6 135394746 135395054 -53884500 + AluY SINE Alu 1 302 -9 27 0 0 0 chr6 135395903 135395930 -53883624 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr6 135397379 135397407 -53882147 + AT_rich Low_complexity Low_complexity 1 28 0 1907 166 0 13 chr6 135397608 135397916 -53881638 + AluJb SINE Alu 6 309 -3 22 0 0 0 chr6 135398121 135398143 -53881411 + AT_rich Low_complexity Low_complexity 1 22 0 420 250 29 0 chr6 135398211 135398315 -53881239 - MIR SINE MIR 0 262 156 297 262 0 0 chr6 135398324 135398385 -53881169 - MER63 DNA MER1_type -17 1043 983 * 602 244 15 0 chr6 135398383 135398514 -53881040 - MER63 DNA MER1_type -302 760 2 265 345 127 25 chr6 135398660 135398857 -53880697 + L2 LINE L2 2564 2780 -534 195 69 0 0 chr6 135400762 135400791 -53878763 + (TG)n Simple_repeat Simple_repeat 2 30 0 212 336 144 39 chr6 135401154 135401258 -53878296 - L2 LINE L2 -1 3271 3157 35 24 0 0 chr6 135402514 135402556 -53876998 + AT_rich Low_complexity Low_complexity 1 42 0 224 372 74 33 chr6 135403524 135403645 -53875909 + L2 LINE L2 3137 3262 -10 2194 70 0 43 chr6 135404412 135404712 -53874842 - AluY SINE Alu -24 287 1 633 259 118 56 chr6 135405626 135406000 -53873554 + L1MCc LINE L1 24 420 -6003 730 124 0 41 chr6 135406088 135406209 -53873345 - AluSg SINE Alu -193 117 2 1471 235 52 73 chr6 135406372 135407490 -53872064 + L1MC/D LINE L1 4649 5743 -780 1402 131 30 13 chr6 135407642 135407879 -53871675 + L1PA16 LINE L1 5926 6166 0 1105 201 10 10 chr6 135408129 135408338 -53871216 + MER2 DNA MER2_type 2 210 -135 212 108 92 0 chr6 135408340 135408405 -53871149 + (TTATA)n Simple_repeat Simple_repeat 2 72 0 240 280 0 13 chr6 135408641 135408716 -53870838 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 20336 34 1 0 chr6 135408753 135411994 -53867560 - L1PA3 LINE L1 0 6155 2907 342 311 162 40 chr6 135412279 135412575 -53866979 - L2 LINE L2 0 3313 2982 251 298 117 91 chr6 135412606 135413015 -53866539 - L2 LINE L2 -342 2972 2553 918 125 7 0 chr6 135413417 135413569 -53865985 - L1PA13 LINE L1 0 6163 6011 1378 190 94 67 chr6 135414089 135414537 -53865017 - MLT1C LTR MaLR 0 467 8 240 384 71 0 chr6 135415285 135415384 -53864170 - L2 LINE L2 -16 3256 3151 21 0 0 0 chr6 135416839 135416860 -53862694 + AT_rich Low_complexity Low_complexity 1 21 0 430 276 49 8 chr6 135418909 135419032 -53860522 + Charlie8 DNA MER1_type 87 214 -2203 536 300 8 62 chr6 135419077 135419320 -53860234 - MER102a DNA MER1_type -14 316 87 21 36 0 0 chr6 135423039 135423067 -53856487 + AT_rich Low_complexity Low_complexity 1 28 0 2177 85 0 58 chr6 135423457 135423785 -53855769 + AluSg SINE Alu 1 309 -1 1809 115 48 10 chr6 135423992 135424287 -53855267 + AluSg SINE Alu 1 306 -4 268 173 39 0 chr6 135424903 135424955 -53854599 + MER68 LTR ERV1 167 220 -342 7408 141 42 48 chr6 135424993 135426427 -53853127 - Ricksha DNA DNA 0 3246 1821 1227 232 95 4 chr6 135426425 135426686 -53852868 - Ricksha DNA DNA -1042 139 21 * 2125 108 37 0 chr6 135426686 135426804 -53852750 + AluSg SINE Alu 3 115 -195 206 32 32 0 chr6 135426804 135426835 -53852719 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2125 108 37 0 chr6 135426835 135427012 -53852542 + AluSg SINE Alu 115 309 -1 1227 232 95 4 chr6 135427012 135427033 -53852521 - Ricksha DNA DNA -1160 21 3 462 336 89 18 chr6 135427059 135427339 -53852215 + MER68 LTR ERV1 257 556 -6 491 340 126 7 chr6 135427357 135427642 -53851912 - L2 LINE L2 -189 3124 2806 2030 124 39 36 chr6 135428440 135428803 -53850751 + THE1B LTR MaLR 1 364 0 187 225 56 42 chr6 135429344 135429415 -53850139 - L2 LINE L2 -75 3238 3167 18403 157 7 20 chr6 135431156 135434653 -53844901 - L1P3 LINE L1 -1812 4649 1201 2275 165 0 2 chr6 135434653 135435054 -53844500 - L1P LINE L1 -1116 5030 4631 4425 103 23 2 chr6 135435090 135435709 -53843845 - L1P3 LINE L1 -4734 1141 510 5929 116 7 3 chr6 135435709 135437515 -53842039 + L1PA11 LINE L1 4357 6173 -1 1867 279 57 20 chr6 135437647 135438466 -53841088 - L1ME1 LINE L1 -15 6134 5266 271 340 101 23 chr6 135438610 135438957 -53840597 - L1ME1 LINE L1 -5285 834 461 770 202 206 7 chr6 135439070 135439352 -53840202 - Charlie2 DNA MER1_type -365 2497 2160 1195 210 28 28 chr6 135439354 135439673 -53839881 - Charlie2b DNA MER1_type -1517 1265 947 210 174 0 0 chr6 135439815 135439861 -53839693 + T-rich Low_complexity Low_complexity 1 46 0 246 318 116 52 chr6 135440814 135440987 -53838567 - L2 LINE L2 0 3313 3130 352 285 97 25 chr6 135441414 135441622 -53837932 + MIR SINE MIR 38 258 -4 467 160 10 10 chr6 135444122 135444222 -53835332 - L1MA4 LINE L1 -144 6156 6057 719 190 0 0 chr6 135444222 135444357 -53835197 + L1MA4 LINE L1 6153 6294 -6 269 320 80 0 chr6 135444525 135444625 -53834929 - LTR16A LTR ERVL -10 440 333 339 328 29 18 chr6 135444669 135444840 -53834714 - MERVL LTR ERVL -2855 2630 2458 417 345 0 0 chr6 135444843 135444982 -53834572 - MERVL LTR ERVL -3108 1888 1750 540 344 26 55 chr6 135445003 135445424 -53834130 - MERVL LTR ERVL -3528 1468 1060 333 336 0 9 chr6 135447211 135447318 -53832236 + MLT1H LTR MaLR 140 245 -304 2185 63 4 0 chr6 135447457 135447727 -53831827 + AluY SINE Alu 27 297 -14 4658 306 161 19 chr6 135449107 135451744 -53827810 - L2 LINE L2 -158 3155 151 711 197 22 0 chr6 135451870 135452007 -53827547 + L1MC1 LINE L1 6176 6315 -18 7172 121 9 17 chr6 135452345 135454326 -53825228 - L1PA8A LINE L1 -1 6445 4494 7868 176 8 30 chr6 135454326 135457221 -53822333 - L1PA8A LINE L1 -3562 2899 12 295 277 98 9 chr6 135457858 135457970 -53821584 + L1ME4a LINE L1 5935 6056 -65 620 323 32 0 chr6 135459123 135459340 -53820214 - MIR SINE MIR -37 225 2 652 250 66 13 chr6 135459850 135460002 -53819552 - MER45A DNA AcHobo -15 163 4 196 91 45 0 chr6 135461103 135461147 -53818407 + (TA)n Simple_repeat Simple_repeat 1 46 0 27 29 0 0 chr6 135461322 135461356 -53818198 + AT_rich Low_complexity Low_complexity 1 34 0 870 346 42 10 chr6 135462138 135462545 -53817009 - LTR33 LTR ERVL 0 521 102 189 0 0 0 chr6 135462627 135462648 -53816906 + (CA)n Simple_repeat Simple_repeat 2 22 0 22 35 0 0 chr6 135463900 135463929 -53815625 + AT_rich Low_complexity Low_complexity 1 29 0 1818 229 65 76 chr6 135463960 135464642 -53814912 - L1ME1 LINE L1 -100 6066 5393 255 306 99 9 chr6 135464660 135464882 -53814672 - L1ME1 LINE L1 -2580 3566 3325 25 0 0 0 chr6 135465586 135465611 -53813943 + AT_rich Low_complexity Low_complexity 1 25 0 27 49 0 0 chr6 135465669 135465710 -53813844 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr6 135466861 135466883 -53812671 + AT_rich Low_complexity Low_complexity 1 22 0 265 259 17 0 chr6 135467655 135467713 -53811841 - L2 LINE L2 -4 3268 3210 592 315 62 19 chr6 135469872 135470132 -53809422 - MLT1J LTR MaLR -170 341 71 346 261 22 0 chr6 135470346 135470438 -53809116 - LTR67 LTR ERVL -25 532 439 27 49 0 0 chr6 135471170 135471211 -53808343 + AT_rich Low_complexity Low_complexity 1 41 0 28 0 0 0 chr6 135472183 135472211 -53807343 + AT_rich Low_complexity Low_complexity 1 28 0 225 355 45 0 chr6 135473425 135473535 -53806019 + L2 LINE L2 2907 3021 -251 21 0 0 0 chr6 135475783 135475804 -53803750 + AT_rich Low_complexity Low_complexity 1 21 0 1170 259 49 16 chr6 135475838 135476205 -53803349 + L1ME3A LINE L1 5746 6124 -46 274 250 21 21 chr6 135478242 135478338 -53801216 - MER103 DNA DNA 0 166 71 242 338 0 0 chr6 135478926 135479003 -53800551 - MIR SINE MIR -10 252 176 2348 185 20 28 chr6 135479014 135479537 -53800017 - LTR27 LTR ERV1 -11 490 3 396 336 15 8 chr6 135479561 135479695 -53799859 - MIR SINE MIR -113 149 15 29 78 0 0 chr6 135480781 135480845 -53798709 + AT_rich Low_complexity Low_complexity 1 64 0 868 255 68 85 chr6 135480911 135481333 -53798221 + MLT1J1 LTR MaLR 61 446 0 1999 104 11 7 chr6 135481385 135481672 -53797882 - AluSx SINE Alu -22 290 3 28 48 0 0 chr6 135481726 135481768 -53797786 + AT_rich Low_complexity Low_complexity 1 42 0 196 320 70 39 chr6 135481790 135481946 -53797608 - L2 LINE L2 -5 3308 3148 29 28 0 0 chr6 135482575 135482611 -53796943 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr6 135483965 135483993 -53795561 + AT_rich Low_complexity Low_complexity 1 28 0 212 284 116 42 chr6 135484625 135484720 -53794834 + L2 LINE L2 3154 3255 -17 1924 136 0 42 chr6 135485221 135485531 -53794023 + AluSx SINE Alu 3 299 -13 267 288 14 14 chr6 135485713 135485786 -53793768 + L2 LINE L2 3193 3265 -48 1126 290 72 8 chr6 135485837 135486237 -53793317 + LTR16A LTR ERVL 25 450 0 2138 87 56 0 chr6 135487917 135488203 -53791351 + AluSc SINE Alu 7 308 -1 921 332 108 28 chr6 135489705 135490254 -53789300 + L2 LINE L2 2596 3211 -102 378 0 0 0 chr6 135490254 135490296 -53789258 + (CA)n Simple_repeat Simple_repeat 1 42 0 921 332 108 28 chr6 135490296 135490404 -53789150 + L2 LINE L2 3211 3309 -4 306 246 282 0 chr6 135490639 135490749 -53788805 + MER5A DNA MER1_type 48 188 -1 616 258 52 52 chr6 135490863 135491076 -53788478 - MER97c DNA MER1_type? -874 216 4 189 0 0 0 chr6 135492889 135492910 -53786644 + (TA)n Simple_repeat Simple_repeat 2 22 0 1221 279 44 31 chr6 135493642 135494119 -53785435 - L2 LINE L2 -3 3310 2828 265 326 24 118 chr6 135494252 135494592 -53784962 - L2 LINE L2 -93 3179 2872 181 286 63 16 chr6 135494656 135494719 -53784835 + MIR SINE MIR 149 214 -48 232 296 12 37 chr6 135494799 135494880 -53784674 + L2 LINE L2 3234 3312 -1 420 350 88 36 chr6 135494906 135495349 -53784205 - L2 LINE L2 -694 2620 2155 324 229 0 0 chr6 135497211 135497294 -53782260 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 1330 192 62 55 chr6 135497310 135497376 -53782178 + L1MC3 LINE L1 7381 7445 -340 1645 175 13 25 chr6 135497376 135497690 -53781864 - AluSx SINE Alu -2 310 1 1330 192 62 55 chr6 135497690 135498024 -53781530 + L1MC3 LINE L1 7445 7784 -1 685 275 35 27 chr6 135498045 135498420 -53781134 + L1M4 LINE L1 2528 2905 -3241 1656 303 74 16 chr6 135498455 135499807 -53779747 + L1M3a LINE L1 1542 4306 -3259 2065 271 88 4 chr6 135499862 135500914 -53778640 + L1M3a LINE L1 2262 3406 -4160 767 205 6 0 chr6 135500914 135501070 -53778484 + L1M3a LINE L1 5250 5406 -2159 10167 197 77 59 chr6 135501085 135504517 -53775037 + L1MA9 LINE L1 2193 5563 -985 5439 132 20 2 chr6 135504517 135505567 -53773987 + L1PA13 LINE L1 5083 6148 -15 10167 197 77 59 chr6 135505567 135506283 -53773271 + L1MA9 LINE L1 5563 6405 -143 2857 84 97 2 chr6 135506283 135506697 -53772857 - MLT2A2 LTR ERVL 0 453 1 10167 197 77 59 chr6 135506697 135506834 -53772720 + L1MA9 LINE L1 6405 6538 -10 25 0 0 0 chr6 135507496 135507521 -53772033 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr6 135509099 135509127 -53770427 + AT_rich Low_complexity Low_complexity 1 28 0 7527 24 5 0 chr6 135509672 135510559 -53768995 - L1PA3 LINE L1 -2 6153 5263 225 0 0 0 chr6 135510852 135510877 -53768677 + (GGAAA)n Simple_repeat Simple_repeat 1 25 0 1917 111 7 4 chr6 135511536 135511816 -53767738 - AluSg SINE Alu -7 303 23 253 324 108 9 chr6 135512352 135512463 -53767091 + L2 LINE L2 3133 3254 -18 524 297 100 29 chr6 135513044 135513283 -53766271 + MER77 LTR ERV1 307 562 -43 22 35 0 0 chr6 135513552 135513581 -53765973 + AT_rich Low_complexity Low_complexity 1 29 0 290 316 180 0 chr6 135513583 135513722 -53765832 + L2 LINE L2 3109 3272 0 265 361 55 20 chr6 135513886 135514034 -53765520 + MIR3 SINE MIR 3 157 -51 24 32 0 0 chr6 135514211 135514242 -53765312 + AT_rich Low_complexity Low_complexity 1 31 0 427 295 57 0 chr6 135514562 135514667 -53764887 - L2 LINE L2 0 3313 3203 25 51 0 0 chr6 135516769 135516808 -53762746 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 135517576 135517597 -53761957 + AT_rich Low_complexity Low_complexity 1 21 0 2076 185 55 7 chr6 135520334 135520960 -53758594 + L1MA9 LINE L1 4910 5567 -724 10390 171 9 28 chr6 135520964 135522996 -53756558 + L1P LINE L1 3319 5313 -833 200 167 0 0 chr6 135523034 135523061 -53756493 + T-rich Low_complexity Low_complexity 5 34 -6 462 151 12 12 chr6 135523061 135523147 -53756407 - L1MD1 LINE L1 -16 6226 6141 1168 209 20 4 chr6 135523207 135523460 -53756094 - L1MD1 LINE L1 -72 6170 5914 5688 96 13 18 chr6 135523472 135523648 -53755906 + L1PA12 LINE L1 5317 5492 -676 1634 208 0 3 chr6 135523648 135523951 -53755603 + AluJb SINE Alu 1 302 -10 5688 96 13 18 chr6 135523951 135524630 -53754924 + L1PA12 LINE L1 5492 6168 0 3366 193 14 15 chr6 135524630 135525365 -53754189 + L1MA9 LINE L1 5572 6306 -6 185 146 146 21 chr6 135526297 135526345 -53753209 + L2 LINE L2 1373 1426 -1888 384 260 55 16 chr6 135527190 135527317 -53752237 - MIR SINE MIR -50 212 81 2197 105 0 37 chr6 135527550 135527874 -53751680 + AluSx SINE Alu 1 312 0 452 322 119 0 chr6 135528133 135528395 -53751159 + L2 LINE L2 2769 3065 -248 5487 132 41 4 chr6 135528753 135529851 -53749703 + L1PB2 LINE L1 5010 6145 -6 190 354 26 46 chr6 135530070 135530265 -53749289 + L2 LINE L2 2420 2610 -704 22 35 0 0 chr6 135531125 135531154 -53748400 + AT_rich Low_complexity Low_complexity 1 29 0 707 65 0 22 chr6 135532484 135532576 -53746978 + 5S rRNA rRNA 1 90 -31 1922 137 51 3 chr6 135532895 135533210 -53746344 + L1PA15 LINE L1 5827 6156 -9 42423 37 22 2 chr6 135534603 135540630 -53738924 + L1PA3 LINE L1 1 6154 -1 21 0 0 0 chr6 135540996 135541017 -53738537 + AT_rich Low_complexity Low_complexity 1 21 0 294 345 95 0 chr6 135541748 135541864 -53737690 + MIR SINE MIR 18 144 -118 2339 73 0 10 chr6 135541889 135542191 -53737363 - AluY SINE Alu -12 299 1 3040 121 24 20 chr6 135542267 135542770 -53736784 - MER84 LTR ERV1 0 507 3 372 341 0 15 chr6 135542826 135542961 -53736593 - MIR SINE MIR -112 150 18 353 293 83 38 chr6 135543070 135543336 -53736218 + L1MC4 LINE L1 7207 7484 -558 1754 262 18 6 chr6 135543360 135543872 -53735682 + L1M4 LINE L1 4592 5109 -1037 1953 157 36 33 chr6 135544551 135544914 -53734640 + THE1B LTR MaLR 1 364 0 2572 145 30 103 chr6 135545535 135546099 -53733455 + L1 LINE L1 15 537 -7028 7961 218 27 16 chr6 135546105 135548175 -53731379 + L1 LINE L1 3592 5683 -1882 8381 176 9 21 chr6 135548178 135549681 -53729873 + L1 LINE L1 954 2439 -5126 1628 126 25 111 chr6 135549681 135549913 -53729641 - THE1C LTR MaLR 0 375 125 465 19 0 0 chr6 135549913 135549967 -53729587 + (TA)n Simple_repeat Simple_repeat 2 55 0 2102 128 16 0 chr6 135549969 135550274 -53729280 + AluSx SINE Alu 1 310 -2 1628 126 25 111 chr6 135550274 135550434 -53729120 - THE1C LTR MaLR -251 124 14 6653 137 29 15 chr6 135550435 135551725 -53727829 + L1 LINE L1 2441 3754 -3811 740 216 0 11 chr6 135551884 135552074 -53727480 + L1 LINE L1 3766 3953 -3612 * 2718 157 11 25 chr6 135552048 135552569 -53726985 + L1 LINE L1 5394 5907 -1658 1863 144 18 15 chr6 135552569 135552900 -53726654 + L1MA3 LINE L1 5969 6303 -2 338 361 80 21 chr6 135553753 135553991 -53725563 - L1MEc LINE L1 -5529 867 616 22 56 0 0 chr6 135554628 135554664 -53724890 + AT_rich Low_complexity Low_complexity 1 36 0 1051 260 113 35 chr6 135554678 135555359 -53724195 + L1ME2 LINE L1 5351 6084 -80 979 182 174 0 chr6 135555359 135555583 -53723971 - Tigger6a DNA MER2_type -514 1083 809 2133 118 37 6 chr6 135555583 135555938 -53723616 - L1PA13 LINE L1 -3 6160 5795 979 182 174 0 chr6 135555938 135555966 -53723588 - Tigger6a DNA MER2_type -788 809 787 1496 63 39 0 chr6 135556586 135556791 -53722763 - L1PA12 LINE L1 -163 6005 5793 2329 228 105 27 chr6 135556792 135557207 -53722347 - Tigger6a DNA MER2_type -786 811 430 1887 155 13 0 chr6 135557207 135557510 -53722044 - AluSx SINE Alu -5 307 1 2329 228 105 27 chr6 135557510 135557845 -53721709 - Tigger6a DNA MER2_type -1167 430 2 1071 166 83 19 chr6 135557861 135558066 -53721488 - AluJb SINE Alu -12 300 83 643 198 123 0 chr6 135558486 135558648 -53720906 - L1MB1 LINE L1 -80 6088 5907 3512 212 21 47 chr6 135558651 135559601 -53719953 - L1MB1 LINE L1 -968 5178 4254 * 15619 48 1 7 chr6 135559597 135560755 -53718799 - L1P LINE L1 -3161 2985 1840 2814 19 0 0 chr6 135560755 135561064 -53718490 + AluYa5 SINE Alu 1 309 -2 15619 48 1 7 chr6 135561064 135561893 -53717661 - L1P LINE L1 -4306 1840 1008 19548 32 2 0 chr6 135561893 135565034 -53714520 + L1PA4 LINE L1 3012 6155 0 249 183 0 0 chr6 135565054 135565114 -53714440 + A-rich Low_complexity Low_complexity 1 60 0 676 367 52 26 chr6 135565435 135565895 -53713659 - L2 LINE L2 -447 2867 2396 908 304 62 43 chr6 135565895 135566654 -53712900 + L1ME LINE L1 141 913 -5292 554 121 0 10 chr6 135566658 135566757 -53712797 + (GGAA)n Simple_repeat Simple_repeat 1 98 0 357 335 49 10 chr6 135566774 135566977 -53712577 + L1ME LINE L1 1585 1795 -4601 418 303 95 5 chr6 135567130 135567341 -53712213 + L1ME LINE L1 2026 2255 -4141 254 280 149 0 chr6 135567408 135567583 -53711971 + HAL1 LINE L1 799 999 -1508 416 289 32 93 chr6 135567724 135568004 -53711550 + HAL1 LINE L1 1232 1494 -1013 29 60 0 0 chr6 135568286 135568336 -53711218 + AT_rich Low_complexity Low_complexity 1 50 0 272 245 201 44 chr6 135568387 135568591 -53710963 + L1ME LINE L1 5617 5852 -269 401 328 145 31 chr6 135568635 135569083 -53710471 + L2 LINE L2 1204 1702 -1612 203 138 0 0 chr6 135569083 135569112 -53710442 + (CA)n Simple_repeat Simple_repeat 1 29 0 2191 121 0 0 chr6 135569329 135569634 -53709920 + AluSx SINE Alu 1 305 -7 587 268 35 15 chr6 135570974 135571172 -53708382 - MIR SINE MIR -4 258 57 1585 299 94 39 chr6 135571286 135572453 -53707101 - L1MC4 LINE L1 -142 7900 6669 1628 233 33 57 chr6 135572491 135572955 -53706599 + L1M3 LINE L1 5030 5443 -740 1011 81 35 0 chr6 135572955 135573128 -53706426 + GA-rich Low_complexity Low_complexity 1 179 0 1628 233 33 57 chr6 135573128 135573484 -53706070 + L1M3 LINE L1 5443 5806 -377 * 2601 264 60 13 chr6 135573476 135574325 -53705229 - L1MEc LINE L1 -3555 3402 2511 13388 143 21 32 chr6 135574325 135576096 -53703458 - Tigger1 DNA MER2_type 0 2418 680 2536 40 0 3 chr6 135576096 135576395 -53703159 - AluY SINE Alu -13 298 1 13388 143 21 32 chr6 135576395 135577068 -53702486 - Tigger1 DNA MER2_type -1738 680 1 2601 264 60 13 chr6 135577068 135577438 -53702116 - L1MEc LINE L1 -4446 2511 2160 265 290 0 58 chr6 135577567 135577705 -53701849 - L1M4 LINE L1 -1214 4932 4803 30 59 0 0 chr6 135577957 135578008 -53701546 + AT_rich Low_complexity Low_complexity 1 51 0 229 329 0 0 chr6 135578141 135578211 -53701343 + AluSg/x SINE Alu 215 284 -16 260 182 0 55 chr6 135578842 135578897 -53700657 - L2 LINE L2 0 3313 3262 346 369 16 8 chr6 135579190 135579312 -53700242 + L2 LINE L2 3150 3272 0 23 86 0 0 chr6 135580440 135580498 -53699056 + AT_rich Low_complexity Low_complexity 1 58 0 544 339 23 0 chr6 135580553 135580730 -53698824 - MIR SINE MIR -29 233 53 1633 207 3 10 chr6 135580917 135581216 -53698338 + AluJb SINE Alu 1 297 -15 242 251 65 0 chr6 135581346 135581439 -53698115 + MLT1J1 LTR MaLR 81 262 -304 1565 265 16 47 chr6 135582271 135582819 -53696735 - L1MEc LINE L1 -6265 594 11 1197 299 47 13 chr6 135582840 135583221 -53696333 - HERV16 LTR ERVL -4548 448 55 910 289 82 12 chr6 135583226 135583569 -53695985 - LTR16A LTR ERVL -49 401 35 468 305 79 20 chr6 135586104 135586307 -53693247 - MIR SINE MIR 0 262 48 244 353 8 41 chr6 135586441 135586563 -53692991 + MIR SINE MIR 30 147 -61 23 0 0 0 chr6 135588219 135588242 -53691312 + AT_rich Low_complexity Low_complexity 1 23 0 391 281 82 19 chr6 135588477 135588744 -53690810 + L1ME LINE L1 5536 5819 -302 230 250 47 31 chr6 135588979 135589043 -53690511 - L2 LINE L2 -4 3268 3204 24 77 0 0 chr6 135589080 135589132 -53690422 + AT_rich Low_complexity Low_complexity 1 52 0 2396 62 3 0 chr6 135589352 135589656 -53689898 - AluY SINE Alu -6 305 1 243 0 0 0 chr6 135589864 135589891 -53689663 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 595 259 19 44 chr6 135589891 135590096 -53689458 - MLT1D LTR MaLR -181 324 125 1982 175 37 41 chr6 135590096 135590636 -53688918 + MLT2A2 LTR ERVL 1 554 0 687 234 0 25 chr6 135590636 135590766 -53688788 - MLT1D LTR MaLR -379 126 1 1887 120 4 0 chr6 135591470 135591736 -53687818 - AluSq SINE Alu -15 298 32 268 210 12 74 chr6 135591861 135591942 -53687612 - MER103 DNA DNA -7 159 84 23 86 0 0 chr6 135591959 135592017 -53687537 + AT_rich Low_complexity Low_complexity 1 58 0 858 205 27 5 chr6 135592097 135592282 -53687272 + MER5A DNA MER1_type 1 189 0 216 0 0 0 chr6 135593643 135593667 -53685887 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 643 279 22 11 chr6 135594275 135594458 -53685096 + MIR SINE MIR 73 257 -5 227 200 0 0 chr6 135595248 135595298 -53684256 + T-rich Low_complexity Low_complexity 1 50 0 2386 31 1 0 chr6 135595299 135596084 -53683470 - L1PA3 LINE L1 0 6155 5219 * 4934 26 0 0 chr6 135596083 135596664 -53682890 + L1P LINE L1 3783 4363 -1783 276 77 0 0 chr6 135596794 135596833 -53682721 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2150 125 0 0 chr6 135597834 135598129 -53681425 - AluSx SINE Alu -17 295 1 5917 36 3 1 chr6 135598596 135599336 -53680218 - L1P LINE L1 -2897 3249 2509 6862 51 16 5 chr6 135599336 135600220 -53679334 + L1PA5 LINE L1 5260 6154 0 513 306 82 0 chr6 135600240 135600446 -53679108 + MLT1G1-int LTR MaLR 329 551 -820 340 239 69 138 chr6 135600866 135601213 -53678341 + MLT1G1-int LTR MaLR 1032 1354 -17 834 282 41 55 chr6 135601242 135601604 -53677950 + MLT1G1 LTR MaLR 76 432 -163 184 328 35 0 chr6 135603064 135603122 -53676432 + MIR SINE MIR 92 151 -111 361 171 0 0 chr6 135603152 135603228 -53676326 + L1MA4 LINE L1 6008 6083 -217 723 138 0 0 chr6 135603243 135603359 -53676195 + L1MA4 LINE L1 6179 6294 -6 423 350 113 32 chr6 135603545 135603977 -53675577 + L3 LINE CR1 793 1259 -318 23 0 0 0 chr6 135604679 135604702 -53674852 + AT_rich Low_complexity Low_complexity 1 23 0 3505 143 30 0 chr6 135605233 135605843 -53673711 + L1MC1 LINE L1 5279 5906 -427 523 292 28 0 chr6 135605837 135605981 -53673573 + L1MA7 LINE L1 224 371 -6659 * 8591 250 85 26 chr6 135605981 135607651 -53671903 + L1MA7 LINE L1 923 2493 -4613 1726 174 49 30 chr6 135607651 135608019 -53671535 - THE1C LTR MaLR 0 375 1 8591 250 85 26 chr6 135608019 135608253 -53671301 + L1MA7 LINE L1 2493 2712 -4394 4503 141 27 14 chr6 135608253 135609107 -53670447 - L1MA8 LINE L1 -4 6287 5423 8591 250 85 26 chr6 135609107 135611680 -53667874 + L1MA7 LINE L1 2712 5343 -1763 8270 139 21 11 chr6 135611678 135614116 -53665438 + L1MA2 LINE L1 3820 6282 -22 * 35 0 0 0 chr6 135614116 135614151 -53665403 + AT_rich Low_complexity Low_complexity 1 35 0 265 222 49 12 chr6 135614151 135614232 -53665322 + L1MA7 LINE L1 6394 6477 -774 1855 166 30 28 chr6 135614232 135614660 -53664894 + L1MA7 LINE L1 6814 7242 -9 293 338 184 10 chr6 135615205 135615412 -53664142 + MIR SINE MIR 20 262 0 434 49 16 0 chr6 135617990 135618051 -53661503 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 388 325 66 10 chr6 135618208 135618405 -53661149 - LTR16C LTR ERVL -31 460 253 433 288 42 75 chr6 135618740 135618952 -53660602 + MIR SINE MIR 39 243 -19 3318 159 25 27 chr6 135619083 135620008 -53659546 + L1M2 LINE L1 4724 5637 -663 208 220 68 119 chr6 135620013 135620131 -53659423 + MIR SINE MIR 147 258 -4 687 221 289 0 chr6 135620292 135620590 -53658964 + MER52A LTR ERV1 1 384 -1371 1060 240 33 26 chr6 135620787 135621091 -53658463 + MER52A LTR ERV1 360 665 -1090 3883 245 68 64 chr6 135621105 135622850 -53656704 + MER52A LTR ERV1 3 1755 0 3405 183 28 160 chr6 135622850 135624108 -53655446 + MER52A LTR ERV1 662 1752 -3 187 318 0 45 chr6 135624325 135624391 -53655163 + MIR SINE MIR 22 84 -124 23 0 0 0 chr6 135624485 135624508 -53655046 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr6 135624719 135624748 -53654806 + AT_rich Low_complexity Low_complexity 1 29 0 2151 123 10 3 chr6 135626883 135627193 -53652361 + AluSx SINE Alu 1 312 0 666 341 58 20 chr6 135627410 135627806 -53651748 + L2 LINE L2 1802 2212 -1102 2267 290 48 13 chr6 135627834 135628602 -53650952 + L1ME LINE L1 5 799 -5246 546 187 71 0 chr6 135628601 135628756 -53650798 + L1ME LINE L1 1974 2139 -4425 * 807 188 185 13 chr6 135628778 135629092 -53650462 + L1ME LINE L1 2194 2561 -4003 1449 309 9 16 chr6 135629110 135630033 -53649521 + L1ME LINE L1 2908 4043 -2521 658 322 130 34 chr6 135630048 135631044 -53648510 + L2 LINE L2 2233 3313 0 653 139 56 0 chr6 135631059 135631167 -53648387 - Tigger2 DNA MER2_type 0 2718 2605 * 3213 153 57 26 chr6 135631163 135631457 -53648097 - Tigger2 DNA MER2_type -2052 666 383 1920 133 14 3 chr6 135631457 135631751 -53647803 - AluSx SINE Alu -12 300 4 3213 153 57 26 chr6 135631751 135632042 -53647512 - Tigger2 DNA MER2_type -2335 383 102 387 0 0 0 chr6 135632042 135632085 -53647469 + (TC)n Simple_repeat Simple_repeat 2 44 0 306 0 0 0 chr6 135632084 135632118 -53647436 + (TA)n Simple_repeat Simple_repeat 1 34 0 * 3213 153 57 26 chr6 135632085 135632176 -53647378 - Tigger2 DNA MER2_type -2616 102 2 377 284 11 6 chr6 135632567 135632679 -53646875 + MIR SINE MIR 49 157 -63 277 300 86 7 chr6 135632967 135633247 -53646307 - HAL1b LINE L1 -335 1013 712 447 232 0 0 chr6 135633258 135633353 -53646201 - MLT1E1 LTR MaLR -4 650 556 1031 55 0 34 chr6 135633465 135633611 -53645943 + L1PA4 LINE L1 6011 6151 -4 1071 240 0 0 chr6 135633635 135633864 -53645690 - L1 LINE L1 -1888 4322 4094 525 346 106 13 chr6 135633898 135634210 -53645344 - L1 LINE L1 -5800 341 1 29 0 0 0 chr6 135634292 135634321 -53645233 + AT_rich Low_complexity Low_complexity 1 29 0 675 282 125 68 chr6 135634365 135634774 -53644780 + L1ME LINE L1 4734 5199 -1365 1885 153 7 0 chr6 135634774 135635061 -53644493 + AluSx SINE Alu 1 289 -23 675 282 125 68 chr6 135635061 135635332 -53644222 + L1ME LINE L1 5199 5453 -1111 496 243 92 41 chr6 135635427 135635914 -53643640 + L1ME LINE L1 5570 6075 -509 2110 286 49 12 chr6 135636369 135637400 -53642154 - L1M2 LINE L1 -4299 2490 1445 515 106 49 0 chr6 135637945 135638087 -53641467 + (TA)n Simple_repeat Simple_repeat 2 150 0 262 108 60 0 chr6 135638111 135638194 -53641360 + (TA)n Simple_repeat Simple_repeat 2 89 0 238 255 60 74 chr6 135638196 135638345 -53641209 - L1M2 LINE L1 -5990 729 583 188 333 80 42 chr6 135638345 135638558 -53640996 - L2 LINE L2 -1650 1664 1444 29 70 0 0 chr6 135638972 135639029 -53640525 + AT_rich Low_complexity Low_complexity 1 57 0 2131 110 0 3 chr6 135639489 135639781 -53639773 + AluSx SINE Alu 1 291 -21 30 0 0 0 chr6 135640521 135640551 -53639003 + AT_rich Low_complexity Low_complexity 1 30 0 219 246 35 18 chr6 135640551 135640608 -53638946 + L2 LINE L2 3215 3272 0 1858 162 3 3 chr6 135640665 135640955 -53638599 - AluJb SINE Alu -22 290 1 30 0 0 0 chr6 135641353 135641383 -53638171 + AT_rich Low_complexity Low_complexity 1 30 0 258 270 0 0 chr6 135642593 135642656 -53636898 + CT-rich Low_complexity Low_complexity 2 64 0 556 296 109 40 chr6 135642728 135642975 -53636579 - LTR16A LTR ERVL -93 357 94 1614 302 32 17 chr6 135642976 135643757 -53635797 + L1M4 LINE L1 4496 5288 -858 252 0 0 0 chr6 135644147 135644175 -53635379 + (A)n Simple_repeat Simple_repeat 1 28 0 331 350 17 28 chr6 135645105 135645285 -53634269 + MIR3 SINE MIR 21 198 -10 202 326 35 23 chr6 135645342 135645428 -53634126 + L3b LINE CR1 1250 1336 -247 345 296 119 13 chr6 135645456 135645615 -53633939 - MER5B DNA MER1_type -1 177 2 213 318 101 0 chr6 135645735 135645864 -53633690 - MIR SINE MIR -7 255 114 297 254 44 70 chr6 135647155 135647269 -53632285 + L2 LINE L2 2768 2878 -436 1854 198 26 3 chr6 135647278 135647626 -53631928 + MLT1A1 LTR MaLR 10 365 0 737 294 136 30 chr6 135647627 135648025 -53631529 + L2 LINE L2 2874 3313 0 23 86 0 0 chr6 135649027 135649085 -53630469 + AT_rich Low_complexity Low_complexity 1 58 0 338 318 154 0 chr6 135649118 135649313 -53630241 - MIR SINE MIR -10 252 28 501 327 130 17 chr6 135649504 135649865 -53629689 + L2 LINE L2 2563 2964 -350 335 349 9 19 chr6 135650110 135650216 -53629338 + L2 LINE L2 3160 3264 -8 306 317 17 61 chr6 135651305 135651485 -53628069 + MER5B DNA MER1_type 1 172 -6 1684 160 6 44 chr6 135651873 135652216 -53627338 - L1MB8 LINE L1 -361 5817 5488 820 224 68 34 chr6 135652215 135652479 -53627075 + L1MB8 LINE L1 5834 6106 -72 * 23398 52 4 3 chr6 135652484 135655416 -53624138 + L1P LINE L1 1 2937 -3209 249 239 0 14 chr6 135655397 135655468 -53624086 + L1 LINE L1 4907 4976 -1170 * 380 150 44 25 chr6 135655716 135655876 -53623678 + (TATAA)n Simple_repeat Simple_repeat 5 167 0 376 314 23 40 chr6 135655889 135656064 -53623490 + L1MEc LINE L1 134 305 -6091 3259 138 39 2 chr6 135657240 135657789 -53621765 - L1M LINE L1 -809 5337 4790 * 5579 100 16 1 chr6 135657788 135658585 -53620969 + L1PA10 LINE L1 5344 6152 -16 5014 77 36 15 chr6 135659342 135659446 -53620108 - LTR12 LTR ERV1 0 688 588 2480 31 41 0 chr6 135659446 135659736 -53619818 + AluY SINE Alu 1 302 -9 5014 77 36 15 chr6 135659736 135660305 -53619249 - LTR12 LTR ERV1 -100 588 1 2899 189 63 21 chr6 135661149 135661828 -53617726 + MER67C LTR ERV1 1 708 -2 1147 276 57 39 chr6 135661828 135662570 -53616984 + L1M4 LINE L1 2844 3604 -2542 1969 151 7 0 chr6 135662570 135662868 -53616686 + AluSx SINE Alu 1 300 -12 1147 276 57 39 chr6 135662868 135662969 -53616585 + L1M4 LINE L1 3604 3702 -2444 1894 234 41 0 chr6 135662983 135663470 -53616084 + L1M2 LINE L1 1960 2466 -4383 * 6308 222 26 45 chr6 135663447 135663765 -53615789 + L1P5 LINE L1 3881 4203 -2655 216 0 0 0 chr6 135663765 135663789 -53615765 + (TAA)n Simple_repeat Simple_repeat 1 24 0 6308 222 26 45 chr6 135663789 135666120 -53613434 + L1P5 LINE L1 4203 6473 -385 3871 106 7 0 chr6 135666118 135666673 -53612881 - L1P3 LINE L1 -2072 4389 3831 * 14985 128 8 30 chr6 135666665 135670096 -53609458 - L1P3 LINE L1 -3022 3439 8 250 252 333 17 chr6 135670833 135671008 -53608546 - MIR SINE MIR -10 252 21 39205 39 36 1 chr6 135671376 135677318 -53602236 + L1PA3 LINE L1 1 6155 0 6248 50 2 6 chr6 135677330 135678272 -53601282 + L1PA4 LINE L1 5157 6097 -58 333 344 55 51 chr6 135678548 135678804 -53600750 - HAL1b LINE L1 -1009 339 83 236 53 35 35 chr6 135678852 135678909 -53600645 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 1988 142 7 0 chr6 135679013 135679302 -53600252 - AluJb SINE Alu -21 291 1 2320 80 27 3 chr6 135679426 135679725 -53599829 + AluY SINE Alu 1 306 -5 581 314 26 45 chr6 135680445 135680754 -53598800 + MLT1J LTR MaLR 6 308 -203 558 277 114 36 chr6 135681126 135681812 -53597742 - L1M4 LINE L1 -2763 3383 2645 452 346 23 43 chr6 135681986 135682336 -53597218 - L1M4 LINE L1 -3532 2614 2272 202 255 64 67 chr6 135682347 135682455 -53597099 - MIR SINE MIR -61 147 42 213 276 0 53 chr6 135682479 135682555 -53596999 - MIR SINE MIR -1 261 190 23 0 0 0 chr6 135682620 135682643 -53596911 + AT_rich Low_complexity Low_complexity 1 23 0 256 321 123 30 chr6 135732886 135733325 -53546229 + L2 LINE L2 1609 2088 -1226 262 377 121 13 chr6 135733994 135734225 -53545329 + MIR SINE MIR 1 256 -6 1608 171 18 0 chr6 135736271 135736551 -53543003 + MLT2D LTR ERVL 1 285 -129 180 0 0 0 chr6 135736601 135736621 -53542933 + (TG)n Simple_repeat Simple_repeat 1 20 0 871 286 84 7 chr6 135737058 135737345 -53542209 + MLT1G1 LTR MaLR 1 309 -286 1033 182 58 65 chr6 135737500 135737791 -53541763 + MLT1B LTR MaLR 11 299 -91 545 239 0 23 chr6 135737833 135737963 -53541591 + MLT1B LTR MaLR 428 554 -1 190 405 40 0 chr6 135737964 135738038 -53541516 - L2 LINE L2 -97 3175 3099 23 0 0 0 chr6 135738102 135738125 -53541429 + AT_rich Low_complexity Low_complexity 1 23 0 1448 196 76 16 chr6 135738212 135738580 -53540974 + MLT1B LTR MaLR 1 390 0 21 57 0 0 chr6 135738644 135738679 -53540875 + AT_rich Low_complexity Low_complexity 1 35 0 183 161 0 0 chr6 135738712 135738743 -53540811 + L2 LINE L2 3229 3259 -54 2104 88 7 0 chr6 135738907 135739180 -53540374 + AluSp SINE Alu 39 313 0 3075 54 16 0 chr6 135739201 135739589 -53539965 + L1PA5 LINE L1 5756 6149 -5 4111 27 2 2 chr6 135740160 135740643 -53538911 + L1PA4 LINE L1 5640 6122 -33 510 32 0 0 chr6 135740643 135740705 -53538849 + L1PA5 LINE L1 6086 6147 -7 1440 284 56 35 chr6 135741310 135741828 -53537726 + L1MA6 LINE L1 786 1314 -6252 430 261 98 31 chr6 135741944 135742262 -53537292 + L1MA6 LINE L1 3043 3381 -4184 8983 170 16 6 chr6 135742304 135744516 -53535038 + L1MA6 LINE L1 4985 7214 -505 22 88 0 0 chr6 135744516 135744573 -53534981 + AT_rich Low_complexity Low_complexity 1 57 0 2299 158 68 10 chr6 135744606 135745092 -53534462 + L1MA6 LINE L1 7202 7715 -4 2508 187 27 80 chr6 135745092 135746198 -53533356 + L1MC2 LINE L1 5323 6343 -1 23 33 0 0 chr6 135747752 135747782 -53531772 + AT_rich Low_complexity Low_complexity 1 30 0 42 57 0 0 chr6 135747830 135747900 -53531654 + AT_rich Low_complexity Low_complexity 1 70 0 28 71 0 0 chr6 135747935 135747991 -53531563 + AT_rich Low_complexity Low_complexity 1 56 0 355 203 0 16 chr6 135748221 135748285 -53531269 + L2 LINE L2 3242 3304 -9 22 0 0 0 chr6 135748526 135748548 -53531006 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr6 135748585 135748622 -53530932 + AT_rich Low_complexity Low_complexity 1 37 0 2315 102 0 0 chr6 135748731 135749024 -53530530 + AluSc SINE Alu 1 293 -16 1417 245 58 14 chr6 135749049 135749494 -53530060 - L1ME3 LINE L1 -266 5896 5432 185 360 13 0 chr6 135749494 135749569 -53529985 - MIR SINE MIR -112 150 75 323 167 21 52 chr6 135749677 135749773 -53529781 - L1MC5 LINE L1 -29 7932 7840 304 283 20 10 chr6 135749889 135749988 -53529566 - L1MC4 LINE L1 -254 7788 7689 1213 197 41 27 chr6 135750789 135751083 -53528471 - AluJb SINE Alu -4 298 1 1425 47 42 0 chr6 135752449 135752642 -53526912 + L1PA4 LINE L1 5954 6154 -1 2133 181 35 60 chr6 135753289 135753869 -53525685 + L1ME2 LINE L1 5585 6149 -15 4529 68 109 119 chr6 135754013 135754847 -53524707 - LTR12 LTR ERV1 0 826 1 295 235 61 26 chr6 135754849 135754964 -53524590 + L1MC4 LINE L1 7923 8041 -1 29 0 0 0 chr6 135755760 135755789 -53523765 + AT_rich Low_complexity Low_complexity 1 29 0 326 327 33 40 chr6 135756221 135756371 -53523183 - L1M4 LINE L1 -3594 2552 2404 1942 123 0 0 chr6 135756371 135756659 -53522895 + AluY SINE Alu 17 304 0 6612 74 37 0 chr6 135756659 135757524 -53522030 + MER11D LTR ERVK 1 897 0 6918 55 1 0 chr6 135757524 135758385 -53521169 + HERVK11D LTR ERVK 1 862 -6890 3020 18 0 0 chr6 135758385 135758722 -53520832 + HERVK11D LTR ERVK 3073 3409 -4343 528 189 246 64 chr6 135758722 135758905 -53520649 + MLT2B1 LTR ERVL 209 357 -163 369 0 0 0 chr6 135758905 135758946 -53520608 + (TC)n Simple_repeat Simple_repeat 2 42 0 * 540 0 0 0 chr6 135758945 135759005 -53520549 + (TA)n Simple_repeat Simple_repeat 1 60 0 528 189 246 64 chr6 135758946 135759085 -53520469 + MLT2B1 LTR ERVL 357 520 0 796 258 34 25 chr6 135759085 135759411 -53520143 - L1M4 LINE L1 -2641 3505 3177 445 258 123 88 chr6 135759807 135760067 -53519487 - MLT1J LTR MaLR -175 336 68 543 287 75 5 chr6 135761115 135761303 -53518251 + MLT1I LTR MaLR 11 211 -198 22 0 0 0 chr6 135762683 135762705 -53516849 + AT_rich Low_complexity Low_complexity 1 22 0 285 330 0 0 chr6 135763106 135763194 -53516360 + L1ME1 LINE L1 374 461 -5935 3967 238 78 18 chr6 135763909 135765487 -53514067 + L1ME1 LINE L1 783 2418 -3988 248 119 0 24 chr6 135765491 135765533 -53514021 + Alu SINE Alu 1 41 -260 911 174 7 0 chr6 135765533 135765688 -53513866 + AluSg/x SINE Alu 138 293 -17 32 91 0 0 chr6 135765761 135765849 -53513705 + AT_rich Low_complexity Low_complexity 1 88 0 634 242 95 8 chr6 135765854 135766228 -53513326 + L1ME1 LINE L1 4806 5421 -985 3041 213 97 23 chr6 135766237 135767132 -53512422 + L1ME1 LINE L1 5451 6409 -17 2452 156 29 7 chr6 135768241 135768658 -53510896 - MSTB LTR MaLR 0 426 1 200 267 89 33 chr6 135768709 135768799 -53510755 + MER5B DNA MER1_type 1 95 -83 652 265 30 0 chr6 135768909 135769075 -53510479 - MER5B DNA MER1_type -7 171 1 464 277 8 0 chr6 135769425 135769555 -53509999 - MER94 DNA DNA -3 131 1 1558 258 64 45 chr6 135769680 135770262 -53509292 - MLT1E LTR MaLR 0 593 1 2040 202 120 13 chr6 135770530 135770995 -53508559 - MLT2B2 LTR ERVL 0 515 1 2560 100 98 5 chr6 135771345 135771755 -53507799 + LTR7 LTR ERV1 1 448 -2 9610 170 62 57 chr6 135771757 135775730 -53503824 + HERVH LTR ERV1 1 3993 -3720 4409 133 1 1 chr6 135775732 135776394 -53503160 + HERVH LTR ERV1 4488 5149 -2564 1354 127 18 9 chr6 135776391 135776612 -53502942 + HERVH LTR ERV1 5597 5819 -1894 * 2370 93 50 13 chr6 135776610 135776988 -53502566 + HERVH LTR ERV1 7322 7713 0 2395 85 154 5 chr6 135776988 135777378 -53502176 + LTR7 LTR ERV1 1 448 -2 356 301 57 34 chr6 135777601 135777810 -53501744 + L3 LINE CR1 1069 1282 -295 194 377 167 7 chr6 135777873 135777962 -53501592 + L3 LINE CR1 1417 1490 -87 6636 101 16 23 chr6 135777962 135778934 -53500620 + LTR5 LTR ERVK 4 969 0 194 377 167 7 chr6 135778934 135778982 -53500572 + L3 LINE CR1 1490 1576 -1 287 347 0 11 chr6 135779181 135779276 -53500278 - L2 LINE L2 -1 3312 3219 191 167 0 21 chr6 135779783 135779831 -53499723 + (TG)n Simple_repeat Simple_repeat 1 47 0 4918 142 69 2 chr6 135780223 135781396 -53498158 + L1PB4 LINE L1 4903 6143 -13 26 50 0 0 chr6 135781396 135781436 -53498118 + AT_rich Low_complexity Low_complexity 1 40 0 255 284 216 26 chr6 135782104 135782294 -53497260 + MIR SINE MIR 11 236 -26 220 190 26 52 chr6 135782688 135782804 -53496750 + GA-rich Low_complexity Low_complexity 3 115 0 28 29 0 0 chr6 135783729 135783764 -53495790 + AT_rich Low_complexity Low_complexity 1 35 0 2763 37 0 0 chr6 135783814 135784141 -53495413 + L1PA5 LINE L1 5815 6141 -13 483 300 30 30 chr6 135784466 135784666 -53494888 + MIR SINE MIR 29 228 -34 228 264 69 0 chr6 135786138 135786225 -53493329 + L1MC4 LINE L1 6614 6706 -1336 294 292 163 26 chr6 135787378 135787540 -53492014 + MIR SINE MIR 37 218 -44 25 0 0 0 chr6 135787952 135787977 -53491577 + AT_rich Low_complexity Low_complexity 1 25 0 31 76 0 0 chr6 135788006 135788072 -53491482 + AT_rich Low_complexity Low_complexity 1 66 0 1878 32 0 0 chr6 135789089 135789308 -53490246 - AluYa5 SINE Alu 0 311 93 294 331 29 6 chr6 135790190 135790362 -53489192 + L2 LINE L2 1471 1646 -1668 1321 215 52 34 chr6 135790829 135791210 -53488344 - MLT1B LTR MaLR 0 390 3 2213 164 56 7 chr6 135791454 135791862 -53487692 - MSTA LTR MaLR 0 428 1 1753 150 21 21 chr6 135791942 135792229 -53487325 + AluSx SINE Alu 1 287 -25 293 161 11 0 chr6 135792233 135792320 -53487234 + (TA)n Simple_repeat Simple_repeat 1 88 0 234 254 15 15 chr6 135792540 135792607 -53486947 + L2 LINE L2 1759 1825 -1489 276 291 52 101 chr6 135792779 135793168 -53486386 + L2 LINE L2 2873 3238 -75 350 281 0 58 chr6 135793352 135793473 -53486081 + MER117 DNA MER1_type 4 117 -80 330 258 339 10 chr6 135794504 135794802 -53484752 + L2 LINE L2 777 1172 -2142 2312 300 78 40 chr6 135794809 135796020 -53483534 + L2 LINE L2 1591 3052 -261 237 33 0 0 chr6 135796064 135796094 -53483460 + (CA)n Simple_repeat Simple_repeat 1 30 0 184 328 41 41 chr6 135796686 135796808 -53482746 + MER5A DNA MER1_type 1 122 -67 * 534 270 197 0 chr6 135796703 135796855 -53482699 - MER5A DNA MER1_type -5 184 3 2233 105 7 0 chr6 135796862 135797158 -53482396 + AluSc SINE Alu 1 298 -11 297 0 0 0 chr6 135797220 135797253 -53482301 + (TG)n Simple_repeat Simple_repeat 2 34 0 2304 169 106 44 chr6 135799393 135800131 -53479423 - LTR1B LTR ERV1 0 826 1 678 245 38 33 chr6 135801080 135801264 -53478290 - MIR SINE MIR -70 192 8 31 0 0 0 chr6 135801425 135801456 -53478098 + AT_rich Low_complexity Low_complexity 1 31 0 180 377 107 45 chr6 135802302 135803105 -53476449 - L2 LINE L2 -429 2885 2033 456 333 101 59 chr6 135803373 135803866 -53475688 + LTR67 LTR ERVL 20 533 -24 279 215 0 0 chr6 135804761 135804826 -53474728 + (TG)n Simple_repeat Simple_repeat 2 66 0 28 29 0 0 chr6 135805171 135805206 -53474348 + AT_rich Low_complexity Low_complexity 1 35 0 485 295 265 13 chr6 135805317 135805778 -53473776 - L3 LINE CR1 -183 1394 818 194 398 56 30 chr6 135806415 135806646 -53472908 - MIR SINE MIR -6 256 20 22 35 0 0 chr6 135808108 135808137 -53471417 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr6 135808307 135808353 -53471201 + AT_rich Low_complexity Low_complexity 1 46 0 2134 110 17 7 chr6 135810012 135810304 -53469250 - AluSx SINE Alu -17 295 1 2349 86 0 7 chr6 135810654 135810956 -53468598 - AluSg SINE Alu 0 310 11 31 0 0 24 chr6 135811049 135811067 -53468487 + AT_rich Low_complexity Low_complexity 1 18 -23 1622 74 0 0 chr6 135811067 135811282 -53468272 + L1PA6 LINE L1 5937 6151 -3 31 0 0 24 chr6 135811282 135811305 -53468249 + AT_rich Low_complexity Low_complexity 18 41 0 1096 152 138 5 chr6 135811331 135811548 -53468006 + Tigger3(Golem) DNA MER2_type 1 246 -2783 1444 180 82 163 chr6 135812238 135812993 -53466561 - LTR8A LTR ERV1 0 727 34 1743 199 39 0 chr6 135813549 135813999 -53465555 + MLT2B1 LTR ERVL 2 520 0 23 33 0 0 chr6 135814122 135814152 -53465402 + AT_rich Low_complexity Low_complexity 1 30 0 198 298 0 0 chr6 135814207 135814264 -53465290 - L2 LINE L2 0 3272 3216 7800 152 34 51 chr6 135814817 135817478 -53462076 + L1MA7 LINE L1 3677 6285 -6 233 357 20 0 chr6 135817621 135817719 -53461835 + L2 LINE L2 2877 2976 -337 184 345 134 0 chr6 135819779 135819898 -53459656 - MIR SINE MIR -6 256 122 612 231 0 0 chr6 135820530 135820647 -53458907 + L2 LINE L2 3197 3313 0 713 333 123 50 chr6 135821145 135822116 -53457438 + L2 LINE L2 1936 2976 -338 1152 239 75 42 chr6 135822537 135822992 -53456562 + MER49 LTR ERV1 241 901 -22 2194 148 17 0 chr6 135823260 135823618 -53455936 - MER47A DNA MER2_type 0 366 3 21 0 0 0 chr6 135825601 135825622 -53453932 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr6 135826686 135826731 -53452823 + AT_rich Low_complexity Low_complexity 1 45 0 382 211 0 28 chr6 135827048 135827119 -53452435 - MER2 DNA MER2_type 0 345 277 1077 231 23 0 chr6 135827121 135827342 -53452212 + AluJo SINE Alu 42 267 -45 1136 173 20 0 chr6 135827383 135827585 -53451969 - MER2 DNA MER2_type -136 209 4 24 32 0 0 chr6 135828357 135828388 -53451166 + AT_rich Low_complexity Low_complexity 1 31 0 186 118 0 0 chr6 135829905 135829939 -53449615 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 4435 32 0 0 chr6 135830076 135830605 -53448949 + L1PA4 LINE L1 5626 6154 -1 328 283 102 36 chr6 135830814 135830980 -53448574 + MIR3 SINE MIR 8 184 -24 23 0 0 0 chr6 135831135 135831158 -53448396 + AT_rich Low_complexity Low_complexity 1 23 0 266 261 0 0 chr6 135831160 135831225 -53448329 + (CAGAGA)n Simple_repeat Simple_repeat 4 68 0 23 0 0 0 chr6 135831375 135831398 -53448156 + AT_rich Low_complexity Low_complexity 1 23 0 1012 187 19 3 chr6 135831920 135832229 -53447325 + MSTD LTR MaLR 3 396 0 1664 143 0 0 chr6 135832501 135832764 -53446790 + AluSx SINE Alu 51 313 0 2553 91 37 6 chr6 135833285 135833638 -53445916 - THE1B LTR MaLR 0 364 1 2745 217 16 17 chr6 135833720 135834297 -53445257 + MER74B LTR ERVL 47 622 0 1763 177 78 91 chr6 135834371 135834416 -53445138 - MLT2B1 LTR ERVL -2 518 474 423 0 0 0 chr6 135834416 135834463 -53445091 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 1763 177 78 91 chr6 135834463 135834942 -53444612 - MLT2B1 LTR ERVL -46 474 1 318 321 80 11 chr6 135835809 135835996 -53443558 - L2 LINE L2 -1 3312 3113 26 0 0 0 chr6 135836084 135836110 -53443444 + AT_rich Low_complexity Low_complexity 1 26 0 915 191 6 39 chr6 135836512 135836690 -53442864 - FAM SINE Alu -1 174 3 369 252 141 32 chr6 135837170 135837483 -53442071 - L1M4 LINE L1 -2144 4002 3656 206 315 147 63 chr6 135837489 135837632 -53441922 - MER91A DNA MER1_type -12 184 30 1020 231 103 36 chr6 135837709 135837991 -53441563 - L1MC4 LINE L1 -453 7589 7265 1650 190 26 37 chr6 135837991 135838343 -53441211 - MER7A DNA MER2_type 0 346 1 1020 231 103 36 chr6 135838343 135838505 -53441049 - L1MC4 LINE L1 -777 7265 7115 477 279 57 6 chr6 135838541 135838699 -53440855 + MIR SINE MIR 91 256 -6 234 156 0 0 chr6 135841149 135841194 -53438360 + (CAT)n Simple_repeat Simple_repeat 1 45 0 23 0 0 0 chr6 135841985 135842008 -53437546 + AT_rich Low_complexity Low_complexity 1 23 0 980 209 0 11 chr6 135842704 135842891 -53436663 + AluSg/x SINE Alu 102 286 -26 181 109 43 0 chr6 135842904 135842950 -53436604 + A-rich Low_complexity Low_complexity 2 49 0 281 153 34 34 chr6 135842978 135843037 -53436517 + LTR8A LTR ERV1 187 245 -482 1299 195 4 40 chr6 135843037 135843309 -53436245 - AluJb SINE Alu -44 268 7 2266 105 3 0 chr6 135843560 135843864 -53435690 + AluSc SINE Alu 5 309 0 365 250 326 11 chr6 135844164 135844348 -53435206 + MIR SINE MIR 21 262 0 317 321 87 47 chr6 135844496 135844684 -53434870 - L1M4 LINE L1 -743 5403 5224 2748 7 13 0 chr6 135844684 135844991 -53434563 - AluY SINE Alu 0 311 1 317 321 87 47 chr6 135844991 135845309 -53434245 - L1M4 LINE L1 -922 5224 4877 417 302 146 41 chr6 135845742 135846106 -53433448 - L2 LINE L2 -6 3307 2906 1414 278 44 5 chr6 135846358 135846789 -53432765 + L1ME1 LINE L1 17 464 -5959 1329 273 44 74 chr6 135847057 135847757 -53431797 + L1ME1 LINE L1 661 1339 -5084 * 6841 162 13 18 chr6 135847753 135850048 -53429506 + L1MA4 LINE L1 4005 6294 -6 503 252 0 0 chr6 135850058 135850191 -53429363 + L1ME1 LINE L1 1319 1452 -4966 1804 180 0 3 chr6 135850191 135850485 -53429069 + AluJo SINE Alu 1 293 -19 1782 246 74 48 chr6 135850568 135851259 -53428295 + L1ME1 LINE L1 4252 4968 -1973 378 107 0 0 chr6 135851259 135851315 -53428239 + (CA)n Simple_repeat Simple_repeat 2 57 0 1782 246 74 48 chr6 135851315 135851420 -53428134 + L1ME1 LINE L1 4968 5069 -1872 1641 231 35 35 chr6 135851411 135851875 -53427679 + L1ME1 LINE L1 6493 6956 -5 * 242 218 90 13 chr6 135851905 135851983 -53427571 - L2 LINE L2 -92 3221 3138 972 293 77 60 chr6 135852000 135852517 -53427037 - L2 LINE L2 -5 3308 2785 1963 110 69 36 chr6 135852517 135852880 -53426674 + THE1C LTR MaLR 1 375 0 972 293 77 60 chr6 135852880 135852913 -53426641 - L2 LINE L2 -528 2785 2754 2994 97 12 2 chr6 135852913 135853344 -53426210 + L1PA14 LINE L1 5726 6160 -1 37 62 0 0 chr6 135853349 135853414 -53426140 + AT_rich Low_complexity Low_complexity 1 65 0 2351 287 137 8 chr6 135853474 135854390 -53425164 - L2 LINE L2 -564 2750 1717 517 261 124 21 chr6 135854410 135854693 -53424861 - L1MC5 LINE L1 -32 7929 7618 1599 286 47 23 chr6 135854700 135855232 -53424322 - L2 LINE L2 -1607 1707 1163 302 246 70 18 chr6 135855952 135856066 -53423488 + Charlie7 DNA MER1_type 2493 2612 0 304 358 94 45 chr6 135856067 135856777 -53422777 - L2 LINE L2 -816 2498 1754 237 286 62 27 chr6 135856960 135857072 -53422482 - MIR SINE MIR -73 189 74 7419 40 0 1 chr6 135857996 135859005 -53420549 + L1PA5 LINE L1 5143 6150 -4 429 217 0 0 chr6 135859171 135859254 -53420300 + L2 LINE L2 3226 3308 -5 689 255 84 35 chr6 135859589 135859965 -53419589 + MLT1D LTR MaLR 1 412 -93 434 174 0 0 chr6 135859982 135860051 -53419503 - MLT1D LTR MaLR -68 437 369 1165 186 14 93 chr6 135860054 135860145 -53419409 - MLT1D LTR MaLR -247 258 161 1561 198 0 21 chr6 135860145 135860433 -53419121 + AluJo SINE Alu 1 282 -30 1165 186 14 93 chr6 135860433 135860621 -53418933 - MLT1D LTR MaLR -344 161 1 415 182 23 0 chr6 135860621 135860708 -53418846 + MLT1D LTR MaLR 417 505 0 246 318 0 0 chr6 135860889 135860955 -53418599 - L2 LINE L2 0 3313 3248 30 0 0 0 chr6 135861029 135861059 -53418495 + AT_rich Low_complexity Low_complexity 1 30 0 1641 116 65 96 chr6 135861243 135861455 -53418099 - THE1C LTR MaLR 0 375 179 1957 165 0 3 chr6 135861455 135861764 -53417790 - AluJb SINE Alu -3 309 2 1641 116 65 96 chr6 135861764 135861938 -53417616 - THE1C LTR MaLR -196 179 1 869 356 24 11 chr6 135861941 135862317 -53417237 - LTR16A LTR ERVL -6 444 64 483 266 45 23 chr6 135862317 135862494 -53417060 - HERV16 LTR ERVL -778 4986 4806 276 254 0 0 chr6 135862783 135862838 -53416716 - HERV16 LTR ERVL -3442 1554 1500 246 179 0 0 chr6 135862838 135862894 -53416660 + (CA)n Simple_repeat Simple_repeat 1 56 0 966 303 32 6 chr6 135863116 135863430 -53416124 - HERV16 LTR ERVL -3785 1211 890 257 296 250 7 chr6 135864589 135864741 -53414813 - MIR SINE MIR 0 262 74 23 33 0 0 chr6 135864741 135864771 -53414783 + AT_rich Low_complexity Low_complexity 1 30 0 256 321 123 30 chr6 135864832 135865271 -53414283 + L2 LINE L2 1609 2088 -1226 262 377 121 13 chr6 135865942 135866173 -53413381 + MIR SINE MIR 1 256 -6 1608 171 18 0 chr6 135868219 135868499 -53411055 + MLT2D LTR ERVL 1 285 -129 216 0 0 0 chr6 135868547 135868571 -53410983 + (TG)n Simple_repeat Simple_repeat 1 24 0 871 286 84 7 chr6 135869008 135869295 -53410259 + MLT1G1 LTR MaLR 1 309 -286 1051 179 58 65 chr6 135869450 135869741 -53409813 + MLT1B LTR MaLR 11 299 -91 532 246 0 23 chr6 135869783 135869913 -53409641 + MLT1B LTR MaLR 428 554 -1 190 405 40 0 chr6 135869914 135869988 -53409566 - L2 LINE L2 -97 3175 3099 23 0 0 0 chr6 135870052 135870075 -53409479 + AT_rich Low_complexity Low_complexity 1 23 0 1463 193 76 16 chr6 135870162 135870530 -53409024 + MLT1B LTR MaLR 1 390 0 21 57 0 0 chr6 135870594 135870629 -53408925 + AT_rich Low_complexity Low_complexity 1 35 0 183 161 0 0 chr6 135870662 135870693 -53408861 + L2 LINE L2 3229 3259 -54 2117 87 73 0 chr6 135870838 135871127 -53408427 + AluSp SINE Alu 1 310 -3 3092 52 16 0 chr6 135871148 135871536 -53408018 + L1PA5 LINE L1 5756 6149 -5 3767 52 2 68 chr6 135872106 135872650 -53406904 + L1PA6 LINE L1 5640 6147 -7 1440 284 56 35 chr6 135873255 135873773 -53405781 + L1MA6 LINE L1 786 1314 -6252 463 262 109 32 chr6 135873889 135874229 -53405325 + L1MA6 LINE L1 3043 3408 -4157 9109 170 16 6 chr6 135874249 135876461 -53403093 + L1MA6 LINE L1 4985 7214 -505 22 88 0 0 chr6 135876461 135876518 -53403036 + AT_rich Low_complexity Low_complexity 1 57 0 2311 158 68 10 chr6 135876551 135877037 -53402517 + L1MA6 LINE L1 7202 7715 -4 2573 186 27 80 chr6 135877037 135878143 -53401411 + L1MC2 LINE L1 5323 6343 -1 23 33 0 0 chr6 135879697 135879727 -53399827 + AT_rich Low_complexity Low_complexity 1 30 0 42 57 0 0 chr6 135879775 135879845 -53399709 + AT_rich Low_complexity Low_complexity 1 70 0 28 71 0 0 chr6 135879880 135879936 -53399618 + AT_rich Low_complexity Low_complexity 1 56 0 348 250 54 27 chr6 135880118 135880230 -53399324 + L2 LINE L2 3190 3304 -9 22 0 0 0 chr6 135880471 135880493 -53399061 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr6 135880530 135880567 -53398987 + AT_rich Low_complexity Low_complexity 1 37 0 2287 102 0 0 chr6 135880676 135880969 -53398585 + AluSc SINE Alu 1 293 -16 1455 245 58 14 chr6 135880994 135881439 -53398115 - L1ME3 LINE L1 -266 5896 5432 190 360 13 0 chr6 135881439 135881514 -53398040 - MIR SINE MIR -112 150 75 324 156 31 62 chr6 135881622 135881718 -53397836 - L1MC5 LINE L1 -29 7932 7840 305 283 20 10 chr6 135881834 135881933 -53397621 - L1MC4 LINE L1 -254 7788 7689 1182 197 41 27 chr6 135882734 135883028 -53396526 - AluJb SINE Alu -4 298 1 1412 47 42 0 chr6 135884394 135884586 -53394968 + L1PA4 LINE L1 5954 6153 -2 2167 183 35 60 chr6 135885233 135885813 -53393741 + L1ME2 LINE L1 5585 6149 -15 4465 68 109 119 chr6 135885957 135886791 -53392763 - LTR12 LTR ERV1 0 826 1 301 235 61 26 chr6 135886793 135886908 -53392646 + L1MC4 LINE L1 7923 8041 -1 29 0 0 0 chr6 135887704 135887733 -53391821 + AT_rich Low_complexity Low_complexity 1 29 0 328 327 33 40 chr6 135888166 135888316 -53391238 - L1MEd LINE L1 -3594 2535 2387 1910 123 0 0 chr6 135888316 135888604 -53390950 + AluY SINE Alu 17 304 0 6567 74 37 0 chr6 135888604 135889469 -53390085 + MER11D LTR ERVK 1 897 0 6853 55 1 0 chr6 135889469 135890330 -53389224 + HERVK11D LTR ERVK 1 862 -6890 38988 36 6 2 chr6 135890330 135894993 -53384561 + HERVK11D LTR ERVK 3073 7752 0 7177 47 26 0 chr6 135894993 135895867 -53383687 + MER11D LTR ERVK 1 897 0 354 291 86 14 chr6 135895900 135896110 -53383444 - L1MEd LINE L1 -3769 2360 2136 346 355 56 45 chr6 135896778 135897133 -53382421 - L1MEd LINE L1 -4864 1255 897 399 302 95 39 chr6 135897681 135898019 -53381535 + L1ME LINE L1 3125 3481 -2665 232 293 48 24 chr6 135898021 135898188 -53381366 + L1ME LINE L1 3525 3695 -2451 636 266 31 62 chr6 135898278 135898631 -53380923 + L1ME LINE L1 4528 4869 -1277 334 263 82 47 chr6 135898664 135898835 -53380719 + L1ME LINE L1 5273 5449 -713 252 305 61 8 chr6 135898838 135898969 -53380585 + L1ME LINE L1 145 282 -5923 220 216 0 0 chr6 135899154 135899205 -53380349 + T-rich Low_complexity Low_complexity 1 51 0 1238 230 54 119 chr6 135899608 135900147 -53379407 + MER21B LTR ERV1 1 504 -359 1072 214 92 33 chr6 135900226 135900530 -53379024 + MER21B LTR ERV1 491 812 -51 2398 241 64 31 chr6 135900548 135901517 -53378037 + L1ME LINE L1 2009 3000 -3215 297 231 56 9 chr6 135901509 135901617 -53377937 + L1ME3A LINE L1 6042 6154 -16 * 21 0 0 0 chr6 135904926 135904947 -53374607 + AT_rich Low_complexity Low_complexity 1 21 0 973 216 44 0 chr6 135905560 135905764 -53373790 + MSTB1 LTR MaLR 220 432 0 353 253 0 40 chr6 135905833 135905932 -53373622 - L1MC/D LINE L1 -2020 5788 5694 * 527 279 46 50 chr6 135905918 135906146 -53373408 - L1ME LINE L1 -407 5757 5519 279 294 77 98 chr6 135907133 135907327 -53372227 - MIR3 SINE MIR -2 206 17 3551 101 44 21 chr6 135908087 135908284 -53371270 + L1PB1 LINE L1 5576 5767 -384 288 0 0 0 chr6 135908284 135908316 -53371238 + (CA)n Simple_repeat Simple_repeat 2 33 0 3551 101 44 21 chr6 135908316 135908681 -53370873 + L1PB1 LINE L1 5767 6151 0 29 0 0 0 chr6 135908716 135908745 -53370809 + AT_rich Low_complexity Low_complexity 1 29 0 1362 157 4 63 chr6 135909874 135910142 -53369412 + THE1A LTR MaLR 102 353 -2 1751 97 0 45 chr6 135910144 135910412 -53369142 + THE1A-int LTR MaLR 1 256 -1324 1164 164 26 40 chr6 135910412 135910638 -53368916 + THE1A LTR MaLR 63 285 -70 9369 109 8 1 chr6 135910642 135911954 -53367600 + THE1A-int LTR MaLR 261 1580 0 2072 129 5 51 chr6 135911954 135912326 -53367228 + THE1A LTR MaLR 1 355 0 1627 179 7 11 chr6 135913353 135913633 -53365921 + AluJo SINE Alu 14 292 -20 2244 138 28 3 chr6 135914454 135914809 -53364745 + THE1B LTR MaLR 1 364 0 9288 115 34 55 chr6 135914809 135916088 -53363466 + THE1B-int LTR MaLR 1 1242 -338 2388 78 0 0 chr6 135916088 135916384 -53363170 + AluY SINE Alu 7 302 -9 9288 115 34 55 chr6 135916384 135916717 -53362837 + THE1B-int LTR MaLR 1242 1580 0 1692 117 8 0 chr6 135916717 135916956 -53362598 + THE1B LTR MaLR 6 246 -118 5651 138 44 7 chr6 135916958 135918279 -53361275 + L1M1 LINE L1 4234 5609 -696 395 246 230 0 chr6 135918370 135918496 -53361058 - MIR SINE MIR -87 175 21 964 191 103 10 chr6 135918619 135918823 -53360731 - MER58A DNA MER1_type -1 223 1 3809 209 60 86 chr6 135919843 135921019 -53358535 + L1MEc LINE L1 2182 3335 -2880 2001 75 38 8 chr6 135921019 135921285 -53358269 + AluY SINE Alu 24 297 -14 3809 209 60 86 chr6 135921285 135921727 -53357827 + L1MEc LINE L1 3335 3787 -2428 1295 85 26 5 chr6 135921723 135921912 -53357642 + L1PA13 LINE L1 5938 6130 -33 * 664 256 50 53 chr6 135921951 135922271 -53357283 + L1MEc LINE L1 3782 4100 -2115 239 325 0 0 chr6 135922328 135922342 -53357212 - L1MA10 LINE L1 0 6334 6321 2417 227 82 63 chr6 135922342 135923419 -53356135 - L1ME1 LINE L1 -5 6161 5061 2861 264 143 29 chr6 135923542 135924742 -53354812 + L2 LINE L2 613 1948 -1366 23 0 0 0 chr6 135925218 135925241 -53354313 + AT_rich Low_complexity Low_complexity 1 23 0 2245 94 7 0 chr6 135926733 135927032 -53352522 - AluSc SINE Alu -8 301 1 242 278 203 40 chr6 135927238 135927465 -53352089 + L2 LINE L2 2988 3251 -62 268 226 16 0 chr6 135927487 135927549 -53352005 + MIR SINE MIR 182 244 -18 258 343 0 0 chr6 135928647 135928717 -53350837 - MER5B DNA MER1_type -80 98 29 544 234 206 27 chr6 135929132 135929316 -53350238 - MIR SINE MIR -2 260 44 544 341 128 26 chr6 135929963 135930353 -53349201 - L3 LINE CR1 -894 683 254 1927 157 0 13 chr6 135930951 135931256 -53348298 - AluJb SINE Alu -11 301 1 722 249 45 25 chr6 135932162 135932363 -53347191 - L2 LINE L2 -7 3306 3102 2390 57 7 0 chr6 135932935 135933233 -53346321 - AluY SINE Alu -11 300 1 28 0 0 0 chr6 135933500 135933528 -53346026 + AT_rich Low_complexity Low_complexity 1 28 0 646 208 110 12 chr6 135933601 135933774 -53345780 + MIR SINE MIR 4 193 -69 1486 230 54 41 chr6 135934733 135935194 -53344360 + MLT1C LTR MaLR 1 467 0 207 0 0 0 chr6 135935295 135935318 -53344236 + (T)n Simple_repeat Simple_repeat 1 23 0 1953 152 77 3 chr6 135935534 135935896 -53343658 - MLT1B LTR MaLR -1 389 1 233 296 113 0 chr6 135936885 135937000 -53342554 - L2 LINE L2 -6 3307 3180 2008 134 10 0 chr6 135937171 135937461 -53342093 - AluSx SINE Alu -19 293 1 628 280 74 19 chr6 135937698 135937976 -53341578 - L1PA5 LINE L1 -298 5856 5564 6423 86 3 2 chr6 135938387 135939273 -53340281 - L1PA7 LINE L1 -1954 4192 3306 8732 69 7 5 chr6 135939274 135941213 -53338341 + L1PA7 LINE L1 4224 6164 0 187 301 14 41 chr6 135941424 135941497 -53338057 + MIR SINE MIR 77 147 -61 3886 51 0 0 chr6 135943010 135943501 -53336053 - L1PA5 LINE L1 -3247 2899 2409 19424 50 7 1 chr6 135943501 135946733 -53332821 + L1PA5 LINE L1 2912 6148 -6 21 0 0 0 chr6 135947512 135947533 -53332021 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr6 135947593 135947642 -53331912 + AT_rich Low_complexity Low_complexity 1 49 0 376 282 90 71 chr6 135947767 135948033 -53331521 + L1M4 LINE L1 4497 4767 -1379 44 35 0 0 chr6 135949168 135949226 -53330328 + AT_rich Low_complexity Low_complexity 1 58 0 214 302 0 0 chr6 135949768 135949854 -53329700 + (TA)n Simple_repeat Simple_repeat 2 87 0 196 276 52 0 chr6 135950994 135951052 -53328502 + L2 LINE L2 3250 3310 -3 21 36 0 0 chr6 135952526 135952554 -53327000 + AT_rich Low_complexity Low_complexity 1 28 0 37 0 0 21 chr6 135952953 135952972 -53326582 + AT_rich Low_complexity Low_complexity 1 19 -28 2269 71 0 0 chr6 135952972 135953255 -53326299 + AluY SINE Alu 12 294 -17 37 0 0 21 chr6 135953255 135953283 -53326271 + AT_rich Low_complexity Low_complexity 19 47 0 321 283 182 5 chr6 135953283 135953470 -53326084 - L2 LINE L2 0 3313 3094 23 0 0 0 chr6 135954674 135954697 -53324857 + AT_rich Low_complexity Low_complexity 1 23 0 31 58 0 0 chr6 135955692 135955744 -53323810 + AT_rich Low_complexity Low_complexity 1 52 0 1119 210 206 89 chr6 135956515 135956895 -53322659 + MER20B DNA MER1_type 2 336 -447 2047 104 0 0 chr6 135956895 135957163 -53322391 + AluSg SINE Alu 11 278 -32 1119 210 206 89 chr6 135957163 135957457 -53322097 + MER20B DNA MER1_type 336 755 -28 308 350 55 12 chr6 135959930 135960093 -53319461 + MER5B DNA MER1_type 2 171 -7 1941 158 0 0 chr6 135960411 135960715 -53318839 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr6 135960952 135960975 -53318579 + AT_rich Low_complexity Low_complexity 1 23 0 228 67 0 0 chr6 135961078 135961108 -53318446 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 27 29 0 0 chr6 135962426 135962460 -53317094 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr6 135963359 135963387 -53316167 + AT_rich Low_complexity Low_complexity 1 28 0 311 364 50 7 chr6 135963658 135963798 -53315756 + MIR SINE MIR 111 256 -6 257 319 32 64 chr6 135964195 135964352 -53315202 - L2 LINE L2 -279 3034 2883 180 337 10 61 chr6 135964546 135964644 -53314910 + L2 LINE L2 2661 2753 -561 197 333 208 0 chr6 135964721 135964817 -53314737 - L2 LINE L2 -1 3312 3197 1587 257 98 8 chr6 135964877 135965386 -53314168 + L2 LINE L2 2201 2755 -559 273 224 196 21 chr6 135965637 135965780 -53313774 + L2 LINE L2 3097 3264 -49 1142 158 14 5 chr6 135966091 135966300 -53313254 - L1 LINE L1 -2059 5506 5296 * 4423 238 93 17 chr6 135966291 135968265 -53311289 - L1 LINE L1 -3557 4008 1878 362 319 55 51 chr6 135968906 135969179 -53310375 - L2 LINE L2 -962 2352 2079 21 0 0 0 chr6 135971676 135971697 -53307857 + AT_rich Low_complexity Low_complexity 1 21 0 1475 250 0 19 chr6 135971796 135972168 -53307386 + MLT1A1 LTR MaLR 1 365 0 1413 145 137 0 chr6 135972206 135972455 -53307099 + MER47A DNA MER2_type 84 366 0 2231 112 0 0 chr6 135973191 135973487 -53306067 + AluSx SINE Alu 1 296 -16 1824 178 169 5 chr6 135975228 135975661 -53303893 + MER34 LTR ERV1 27 530 -12 237 305 12 0 chr6 135976654 135976736 -53302818 + (CA)n Simple_repeat Simple_repeat 2 84 0 818 317 135 23 chr6 135978331 135979146 -53300408 + L1MEc LINE L1 34 939 -5457 816 263 43 43 chr6 135979170 135979368 -53300186 + L1ME2 LINE L1 5751 5951 -213 1040 184 22 61 chr6 135979368 135979596 -53299958 + MER20 DNA MER1_type 1 219 0 816 263 43 43 chr6 135979596 135979788 -53299766 + L1ME2 LINE L1 5950 6141 -23 2489 56 0 7 chr6 135981836 135982139 -53297415 - AluY SINE Alu -10 301 1 512 311 88 7 chr6 135984032 135984357 -53295197 - L2 LINE L2 -5 3308 2919 877 180 90 0 chr6 135984380 135984619 -53294935 + L1M4 LINE L1 5227 5486 -698 533 213 31 16 chr6 135984629 135984756 -53294798 + L1M4 LINE L1 5569 5697 -487 2329 188 66 14 chr6 135984756 135985240 -53294314 + LTR22 LTR ERVK 1 509 0 183 156 0 0 chr6 135986239 135986271 -53293283 + (CATA)n Simple_repeat Simple_repeat 3 34 0 2544 268 164 9 chr6 135987269 135988235 -53291319 - L2 LINE L2 -558 2756 1642 2266 165 47 6 chr6 135988270 135988737 -53290817 + L1MA8 LINE L1 5806 6291 0 707 176 35 42 chr6 135989114 135989256 -53290298 - MLT2D LTR ERVL 0 414 274 825 335 49 9 chr6 135989258 135989586 -53289968 - L2 LINE L2 -1684 1630 1290 4960 133 22 24 chr6 135989813 135990578 -53288976 - L1PA16 LINE L1 -7 7597 6833 2443 79 0 3 chr6 135990578 135990882 -53288672 - AluY SINE Alu -6 305 3 4960 133 22 24 chr6 135990882 135990986 -53288568 - L1PA16 LINE L1 -771 6833 6730 6507 77 5 8 chr6 135990989 135991611 -53287943 - L1PA7 LINE L1 -11 6143 5521 1795 138 0 0 chr6 135991611 135991872 -53287682 - AluSx SINE Alu -17 295 35 6507 77 5 8 chr6 135991872 135993008 -53286546 - L1PA7 LINE L1 -633 5521 4399 21626 135 15 81 chr6 135993008 135997441 -53282113 - L1PA7 LINE L1 -1996 4150 12 311 175 0 0 chr6 135997447 135997510 -53282044 - L1PA16 LINE L1 -850 6754 6692 * 1288 220 23 3 chr6 135997501 135997806 -53281748 + L1P LINE L1 4949 5259 -887 * 2245 209 13 15 chr6 135997801 135998327 -53281227 - L1 LINE L1 -1296 4850 4326 10498 236 26 21 chr6 135998443 136002224 -53277330 - L1PA16 LINE L1 -1513 6071 2256 1943 173 14 12 chr6 136002917 136003263 -53276291 - MER7A DNA MER2_type -1 345 1 21 57 0 0 chr6 136004013 136004048 -53275506 + AT_rich Low_complexity Low_complexity 1 35 0 6481 78 0 37 chr6 136004623 136005817 -53273737 - L1PA11 LINE L1 -16 6158 4959 1910 143 40 0 chr6 136005817 136006138 -53273416 + L1P LINE L1 3983 4316 -1830 42947 30 24 1 chr6 136006138 136012148 -53267406 + L1HS LINE L1 8 6155 0 3979 159 1 1 chr6 136012148 136012835 -53266719 + L1P LINE L1 4303 4989 -1157 257 128 21 0 chr6 136013549 136013596 -53265958 + (CA)n Simple_repeat Simple_repeat 2 49 0 543 276 59 71 chr6 136014376 136014964 -53264590 + L1MC5 LINE L1 7243 7730 -231 380 288 31 12 chr6 136015052 136015212 -53264342 + L1MC5 LINE L1 7763 7925 -36 194 217 145 0 chr6 136015231 136015300 -53264254 - L2 LINE L2 -215 3098 3020 1050 117 61 12 chr6 136015530 136015693 -53263861 + THE1B LTR MaLR 194 364 0 5368 75 16 1 chr6 136015697 136016400 -53263154 + HERVL-A2 LTR ERVL 4942 5654 0 3212 103 2 30 chr6 136016400 136016866 -53262688 + MLT2A2 LTR ERVL 1 453 0 327 233 46 117 chr6 136017742 136018025 -53261529 + HAL1b LINE L1 199 461 -887 467 303 27 54 chr6 136018141 136018171 -53261383 - L2 LINE L2 -767 2547 2518 1530 192 31 7 chr6 136018171 136018457 -53261097 + AluJb SINE Alu 3 295 -17 467 303 27 54 chr6 136018457 136018611 -53260943 - L2 LINE L2 -796 2518 2368 432 315 67 52 chr6 136018867 136019331 -53260223 + L1M4 LINE L1 3749 4219 -1927 966 299 49 53 chr6 136019383 136019834 -53259720 - L2 LINE L2 -15 3298 2850 778 164 88 31 chr6 136019835 136019994 -53259560 + Tigger4(Zombi) DNA MER2_type 1 168 -2563 2215 88 0 18 chr6 136020034 136020319 -53259235 - AluSg SINE Alu -30 280 1 3300 110 46 20 chr6 136020323 136020542 -53259012 + Tigger4(Zombi) DNA MER2_type 2174 2386 -345 2474 126 49 49 chr6 136020542 136020970 -53258584 + MSTA LTR MaLR 1 428 0 3300 110 46 20 chr6 136020970 136021294 -53258260 + Tigger4(Zombi) DNA MER2_type 2386 2731 0 638 264 44 125 chr6 136021297 136021329 -53258225 - L2 LINE L2 -466 2848 2815 1834 116 91 28 chr6 136021329 136021682 -53257872 - THE1C LTR MaLR 0 375 1 638 264 44 125 chr6 136021682 136021945 -53257609 - L2 LINE L2 -499 2815 2577 1175 242 56 40 chr6 136021987 136022502 -53257052 + MLT1E LTR MaLR 10 593 0 258 226 8 16 chr6 136022588 136022712 -53256842 + (TA)n Simple_repeat Simple_repeat 1 123 0 210 71 0 0 chr6 136022715 136022743 -53256811 + (TG)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr6 136023076 136023098 -53256456 + AT_rich Low_complexity Low_complexity 1 22 0 306 335 118 0 chr6 136023189 136023341 -53256213 - MIR SINE MIR -7 255 86 4544 172 22 27 chr6 136023531 136024635 -53254919 + L1MA4 LINE L1 4511 5616 -684 2309 116 126 5 chr6 136024635 136025015 -53254539 + MSTA LTR MaLR 1 426 -2 4544 172 22 27 chr6 136025015 136025376 -53254178 + L1MA4 LINE L1 5616 5977 -323 540 160 0 0 chr6 136025376 136025475 -53254079 + L1MA4 LINE L1 6197 6296 -4 24 91 0 0 chr6 136026334 136026400 -53253154 + AT_rich Low_complexity Low_complexity 1 66 0 195 69 0 0 chr6 136026456 136026485 -53253069 + (TG)n Simple_repeat Simple_repeat 2 30 0 816 325 73 33 chr6 136027664 136028214 -53251340 + HERVL LTR ERVL 2726 3297 -2357 269 330 89 46 chr6 136028247 136028529 -53251025 - MERVL LTR ERVL -1352 4133 3840 363 365 18 6 chr6 136028738 136028908 -53250646 - MERVL LTR ERVL -2193 3571 3400 538 286 22 39 chr6 136028915 136029093 -53250461 + HERVL LTR ERVL 4155 4329 -1325 790 290 82 10 chr6 136029166 136029459 -53250095 + HERVL LTR ERVL 4495 4808 -956 529 322 42 67 chr6 136029550 136029997 -53249557 + HERVL LTR ERVL 4945 5380 -384 284 253 23 11 chr6 136030314 136030401 -53249153 + MIR SINE MIR 173 260 -2 227 253 41 75 chr6 136030435 136030581 -53248973 + HAL1 LINE L1 1988 2128 -379 675 295 108 88 chr6 136030585 136030982 -53248572 - HAL1 LINE L1 -1972 535 131 639 180 120 16 chr6 136030995 136031178 -53248376 + HAL1 LINE L1 1655 1856 -651 663 278 49 71 chr6 136031396 136031662 -53247892 + MIR SINE MIR 2 261 -1 887 262 80 52 chr6 136031692 136032208 -53247346 + HAL1 LINE L1 1978 2507 0 222 141 21 120 chr6 136032807 136032949 -53246605 + (TTATA)n Simple_repeat Simple_repeat 1 128 0 420 37 0 0 chr6 136033488 136033542 -53246012 + (CA)n Simple_repeat Simple_repeat 2 55 0 459 292 18 12 chr6 136033598 136033769 -53245785 + CT-rich Low_complexity Low_complexity 3 174 0 250 274 15 0 chr6 136034448 136034583 -53244971 + (TA)n Simple_repeat Simple_repeat 2 138 0 27 0 0 0 chr6 136034803 136034830 -53244724 + AT_rich Low_complexity Low_complexity 1 27 0 2935 80 57 7 chr6 136035091 136035473 -53244081 + MLT2A1 LTR ERVL 1 407 -37 261 0 0 0 chr6 136035473 136035502 -53244052 + (TA)n Simple_repeat Simple_repeat 1 29 0 2935 80 57 7 chr6 136035502 136035542 -53244012 + MLT2A1 LTR ERVL 407 444 0 43057 79 8 7 chr6 136035543 136041189 -53238365 + HERVL-A1 LTR ERVL 2 5654 0 2839 94 20 8 chr6 136041189 136041584 -53237970 + MLT2A1 LTR ERVL 1 400 -44 431 112 60 0 chr6 136041585 136041701 -53237853 + (TA)n Simple_repeat Simple_repeat 1 123 0 301 151 19 0 chr6 136041712 136041765 -53237789 + MLT2A1 LTR ERVL 400 453 0 2428 72 0 3 chr6 136041891 136042197 -53237357 + AluY SINE Alu 1 305 -6 221 271 34 0 chr6 136042373 136042432 -53237122 + L2 LINE L2 3252 3312 -1 24 53 0 0 chr6 136043004 136043042 -53236512 + AT_rich Low_complexity Low_complexity 1 38 0 195 184 0 0 chr6 136043046 136043084 -53236470 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr6 136043626 136043648 -53235906 + AT_rich Low_complexity Low_complexity 1 22 0 301 384 16 0 chr6 136044515 136044640 -53234914 + L2 LINE L2 3183 3309 -4 1236 243 112 19 chr6 136044833 136045315 -53234239 + HAL1b LINE L1 822 1348 0 1162 300 99 60 chr6 136045411 136046181 -53233373 - L2 LINE L2 -921 2393 1594 495 260 240 10 chr6 136046992 136047188 -53232366 - MIR SINE MIR -21 241 1 628 211 16 65 chr6 136048667 136048720 -53230834 - MER5B DNA MER1_type -2 176 122 207 0 0 0 chr6 136048720 136048743 -53230811 + (GAA)n Simple_repeat Simple_repeat 2 24 0 628 211 16 65 chr6 136048743 136048874 -53230680 - MER5B DNA MER1_type -56 122 1 746 196 11 43 chr6 136049062 136049246 -53230308 + MER5B DNA MER1_type 1 178 0 2366 99 0 0 chr6 136049351 136049654 -53229900 + AluSg SINE Alu 1 303 -7 1064 237 74 72 chr6 136051544 136051630 -53227924 + MLT1C LTR MaLR 34 118 -349 2446 124 24 14 chr6 136051630 136052001 -53227553 - THE1C LTR MaLR 0 375 1 1064 237 74 72 chr6 136052001 136052345 -53227209 + MLT1C LTR MaLR 118 465 -2 710 267 93 32 chr6 136052458 136052580 -53226974 - MIR SINE MIR 0 262 149 2202 179 13 19 chr6 136052580 136053045 -53226509 - L1MA10 LINE L1 -13 6321 5860 710 267 93 32 chr6 136053045 136053169 -53226385 - MIR SINE MIR -113 149 1 756 281 77 46 chr6 136053577 136053968 -53225586 + L1MC/D LINE L1 5254 5656 -2152 894 244 127 51 chr6 136053969 136054301 -53225253 + MLT1E3 LTR MaLR 1 357 -267 614 200 33 0 chr6 136054301 136054421 -53225133 + MLT1E3 LTR MaLR 501 624 0 546 233 89 0 chr6 136054421 136054567 -53224987 + L1MC/D LINE L1 5653 5811 -1997 2262 107 0 6 chr6 136054812 136055148 -53224406 - L1PB1 LINE L1 -64 6087 5754 357 325 8 17 chr6 136055290 136055410 -53224144 + L2 LINE L2 3154 3272 0 314 23 23 0 chr6 136055416 136055459 -53224095 + (CA)n Simple_repeat Simple_repeat 2 45 0 8976 181 19 13 chr6 136055459 136055881 -53223673 + L1PA14 LINE L1 3295 3713 -2433 2185 110 3 23 chr6 136055881 136056191 -53223363 - AluSq SINE Alu -9 304 1 8976 181 19 13 chr6 136056191 136056889 -53222665 + L1PA14 LINE L1 3713 4430 -1716 910 0 9 9 chr6 136056889 136057000 -53222554 + (TAAAA)n Simple_repeat Simple_repeat 2 112 0 8976 181 19 13 chr6 136057000 136057665 -53221889 + L1PA14 LINE L1 4430 5090 -1056 5034 245 17 34 chr6 136057672 136058775 -53220779 - MER52A LTR ERV1 -7 1748 664 261 200 36 0 chr6 136058748 136058803 -53220751 - MER52A LTR ERV1 -1485 270 214 * 477 265 0 0 chr6 136058790 136058892 -53220662 - MER52A LTR ERV1 -1653 102 1 2412 144 26 5 chr6 136058892 136059439 -53220115 + L1PA14 LINE L1 5087 5642 -519 2802 107 30 20 chr6 136059439 136059879 -53219675 + MLT2A1 LTR ERVL 1 444 0 2827 68 0 5 chr6 136059879 136060319 -53219235 + HERVL-A1 LTR ERVL 1 475 -5179 * 3921 87 14 0 chr6 136060295 136060812 -53218742 + HERVL LTR ERVL 2157 2680 -2974 2509 132 35 7 chr6 136060826 136061249 -53218305 + L1PA14 LINE L1 5726 6160 -1 305 374 109 16 chr6 136061319 136061632 -53217922 - L2 LINE L2 -834 2480 2139 520 88 0 0 chr6 136061777 136061842 -53217712 + THE1C LTR MaLR 1 65 -310 1960 49 0 8 chr6 136061842 136062088 -53217466 + MLT2A1 LTR ERVL 1 244 -200 348 65 0 0 chr6 136062124 136062170 -53217384 + MLT2A1 LTR ERVL 408 453 0 2055 113 43 0 chr6 136062170 136062472 -53217082 + THE1C LTR MaLR 61 375 0 197 342 60 69 chr6 136062504 136062823 -53216731 - L2 LINE L2 -1411 1903 1588 14035 142 32 6 chr6 136063120 136064064 -53215490 + Tigger1 DNA MER2_type 1 919 -1499 2220 125 0 0 chr6 136064064 136064376 -53215178 - AluSx SINE Alu 0 312 1 14035 142 32 6 chr6 136064376 136065787 -53213767 + Tigger1 DNA MER2_type 919 2418 0 248 284 14 71 chr6 136067409 136067550 -53212004 + L2 LINE L2 2725 2857 -457 302 306 121 32 chr6 136067921 136068045 -53211509 - MIR3 SINE MIR -41 167 33 372 296 56 16 chr6 136069553 136069678 -53209876 - L2 LINE L2 0 3272 3143 1502 97 26 18 chr6 136070387 136070614 -53208940 + MER30 DNA MER1_type 2 230 0 4233 248 107 16 chr6 136070733 136072545 -53207009 - L1M4 LINE L1 -1918 4228 2253 1031 232 84 80 chr6 136072741 136073203 -53206351 - L1MC5 LINE L1 -430 7531 7065 1604 155 80 44 chr6 136073203 136073565 -53205989 + THE1C LTR MaLR 1 375 0 1031 232 84 80 chr6 136073565 136073662 -53205892 - L1MC5 LINE L1 -896 7065 6970 241 184 0 0 chr6 136073752 136073790 -53205764 - L2 LINE L2 -19 3294 3257 228 231 0 0 chr6 136074084 136074136 -53205418 - L1MC4 LINE L1 -1339 6703 6652 243 50 50 0 chr6 136074174 136074214 -53205340 - L1PB1 LINE L1 -2 6149 6108 2035 117 7 3 chr6 136074229 136074538 -53205016 - L1PB1 LINE L1 -2 6149 5840 642 247 0 0 chr6 136074545 136074695 -53204859 - L1P LINE L1 -1152 4994 4845 4375 158 12 12 chr6 136074697 136076163 -53203391 - L1P5 LINE L1 -332 5819 4355 * 4534 174 12 8 chr6 136076146 136077356 -53202198 - L1PBa LINE L1 -2989 3873 2598 900 293 84 15 chr6 136277380 136278103 -53001451 + L1ME3 LINE L1 3710 4483 -1663 2487 255 72 36 chr6 136278110 136278172 -53001382 + L1ME3 LINE L1 4557 4615 -1547 207 0 0 0 chr6 136278172 136278195 -53001359 + (TG)n Simple_repeat Simple_repeat 2 24 0 2487 255 72 36 chr6 136278195 136279147 -53000407 + L1ME3 LINE L1 4615 5658 -504 2361 57 0 3 chr6 136279147 136279460 -53000094 - AluY SINE Alu 0 312 1 2487 255 72 36 chr6 136279460 136279955 -52999599 + L1ME3 LINE L1 5658 6134 -28 33 0 0 0 chr6 136280572 136280605 -52998949 + AT_rich Low_complexity Low_complexity 1 33 0 25580 149 16 12 chr6 136280918 136282140 -52997414 + L1PA8 LINE L1 2 1218 -5269 243 103 0 0 chr6 136282140 136282179 -52997375 + (CAA)n Simple_repeat Simple_repeat 1 39 0 25580 149 16 12 chr6 136282179 136285765 -52993789 + L1PA8 LINE L1 1218 4896 -1591 2806 10 0 3 chr6 136285765 136286074 -52993480 + AluYa5 SINE Alu 1 308 -3 25580 149 16 12 chr6 136286074 136287672 -52991882 + L1PA8 LINE L1 4896 6487 0 30 69 0 0 chr6 136287944 136288002 -52991552 + AT_rich Low_complexity Low_complexity 1 58 0 1083 183 146 55 chr6 136288253 136288527 -52991027 - AluJo SINE Alu -3 299 1 272 70 0 23 chr6 136288589 136288632 -52990922 + MLT2B3 LTR ERVL 1 42 -512 1714 163 23 112 chr6 136288656 136289048 -52990506 + MLT2B3 LTR ERVL 191 547 -7 2090 221 70 87 chr6 136290095 136290724 -52988830 - MLT1E2 LTR MaLR -6 620 1 2254 114 0 0 chr6 136290979 136291285 -52988269 + AluY SINE Alu 1 306 -5 592 271 117 97 chr6 136291588 136292082 -52987472 + HAL1b LINE L1 1 504 -844 1009 276 55 29 chr6 136292631 136293142 -52986412 + L1MC5 LINE L1 7003 7526 -435 305 314 46 10 chr6 136293347 136293506 -52986048 - L1MEc LINE L1 -2421 3794 3633 1841 108 16 32 chr6 136293574 136293889 -52985665 - L1MA3 LINE L1 -18 6287 5978 1975 183 0 13 chr6 136293894 136294272 -52985282 - L1P LINE L1 -2056 4090 3718 1699 269 79 10 chr6 136294336 136295159 -52984395 - L1MEc LINE L1 -2849 3366 2487 25 31 0 0 chr6 136295193 136295225 -52984329 + AT_rich Low_complexity Low_complexity 1 32 0 678 301 58 26 chr6 136295266 136295668 -52983886 - L1MEc LINE L1 -4654 1742 1319 2320 111 0 0 chr6 136295668 136295975 -52983579 - AluSq SINE Alu -6 307 1 678 301 58 26 chr6 136295975 136296074 -52983480 - L1MEc LINE L1 -5077 1319 1225 2041 178 115 43 chr6 136296353 136296631 -52982923 + LTR64 LTR ERVK 3 260 -298 380 79 0 16 chr6 136296631 136296694 -52982860 - L1PB3 LINE L1 -5 6149 6088 2041 178 115 43 chr6 136296694 136296927 -52982627 + LTR64 LTR ERVK 260 551 -7 2194 119 3 0 chr6 136297009 136297303 -52982251 + AluSx SINE Alu 3 297 -15 287 250 98 30 chr6 136297576 136297708 -52981846 - LTR27 LTR ERV1 -2 634 494 1979 196 67 35 chr6 136297739 136298252 -52981302 - LTR27 LTR ERV1 -140 496 3 344 202 21 32 chr6 136298328 136298422 -52981132 - MLT1K LTR MaLR -9 579 487 1265 159 0 14 chr6 136299777 136299997 -52979557 + L1MC1 LINE L1 6111 6327 -6 14640 48 2 0 chr6 136300119 136302711 -52976843 - L1PA5 LINE L1 -2 6152 3554 180 111 0 0 chr6 136304357 136304384 -52975170 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 229 298 21 0 chr6 136305033 136305127 -52974427 + (TTCA)n Simple_repeat Simple_repeat 2 97 0 334 277 11 0 chr6 136305750 136305844 -52973710 + L2 LINE L2 1733 1827 -1487 644 245 5 36 chr6 136305870 136306066 -52973488 + L2 LINE L2 2399 2588 -726 851 276 142 27 chr6 136306693 136307317 -52972237 + L2 LINE L2 2593 3279 -34 382 300 103 82 chr6 136307781 136307962 -52971592 + L2 LINE L2 2280 2456 -858 2300 98 3 0 chr6 136307962 136308258 -52971296 + AluSp SINE Alu 1 297 -16 382 300 103 82 chr6 136308258 136308649 -52970905 + L2 LINE L2 2456 2864 -450 604 302 108 0 chr6 136308909 136309121 -52970433 - MIR SINE MIR 0 262 28 230 377 0 49 chr6 136309405 136309527 -52970027 + L2 LINE L2 3197 3312 -1 266 140 0 40 chr6 136309683 136309733 -52969821 - U6 snRNA snRNA -59 48 1 215 331 8 24 chr6 136310138 136310262 -52969292 + MIR SINE MIR 97 218 -44 21 57 0 0 chr6 136311107 136311142 -52968412 + AT_rich Low_complexity Low_complexity 1 35 0 437 215 0 6 chr6 136313557 136313650 -52965904 + Tigger7 DNA MER2_type 1 2242 -249 1847 159 10 0 chr6 136313701 136313996 -52965558 - AluSx SINE Alu -14 298 1 2554 149 59 11 chr6 136313996 136314451 -52965103 + MER44D DNA MER2_type 66 597 -8 189 74 0 0 chr6 136314728 136314755 -52964799 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 28 0 0 0 chr6 136314929 136314957 -52964597 + AT_rich Low_complexity Low_complexity 1 28 0 1288 189 5 9 chr6 136314957 136315179 -52964375 - MER58A DNA MER1_type 0 224 4 21 57 0 0 chr6 136315535 136315570 -52963984 + AT_rich Low_complexity Low_complexity 1 35 0 2151 97 28 0 chr6 136315859 136316147 -52963407 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr6 136316565 136316587 -52962967 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 136316760 136316784 -52962770 + AT_rich Low_complexity Low_complexity 1 24 0 212 318 15 0 chr6 136317304 136317370 -52962184 + (ATG)n Simple_repeat Simple_repeat 1 67 0 328 160 0 0 chr6 136317645 136317695 -52961859 + MLT1B LTR MaLR 1 50 -340 2032 145 0 0 chr6 136317714 136318010 -52961544 - AluSx SINE Alu -16 296 1 31 58 0 0 chr6 136318294 136318346 -52961208 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr6 136318569 136318590 -52960964 + AT_rich Low_complexity Low_complexity 1 21 0 1012 337 82 27 chr6 136318694 136319522 -52960032 - L1M4 LINE L1 -2796 3350 2477 1754 197 98 13 chr6 136319959 136320340 -52959214 - MSTB1 LTR MaLR -7 425 21 301 371 25 6 chr6 136320350 136320509 -52959045 + L2 LINE L2 2874 3035 -237 683 117 0 67 chr6 136320562 136320648 -52958906 - L1PA15 LINE L1 -2 6163 6086 1492 153 74 49 chr6 136320648 136321014 -52958540 - THE1C LTR MaLR 0 375 1 683 117 0 67 chr6 136321014 136321047 -52958507 - L1PA15 LINE L1 -79 6086 6052 3729 172 8 40 chr6 136321048 136322129 -52957425 - L1PA8A LINE L1 -151 5980 4935 349 271 64 29 chr6 136322554 136322686 -52956868 - MIR SINE MIR -68 140 6 2067 109 14 10 chr6 136323763 136324057 -52955497 + AluSg SINE Alu 1 295 -15 28 61 0 0 chr6 136324057 136324106 -52955448 + AT_rich Low_complexity Low_complexity 1 49 0 220 333 18 27 chr6 136324371 136324482 -52955072 + MIR SINE MIR 70 179 -83 21 0 0 0 chr6 136324498 136324519 -52955035 + AT_rich Low_complexity Low_complexity 1 21 0 204 349 0 0 chr6 136326075 136326138 -52953416 + L2 LINE L2 3203 3265 -7 485 289 21 7 chr6 136327139 136327281 -52952273 - MIR SINE MIR -13 249 106 1316 195 76 93 chr6 136327780 136328143 -52951411 + MLT2D LTR ERVL 1 369 -45 267 54 0 0 chr6 136328143 136328180 -52951374 + (TG)n Simple_repeat Simple_repeat 2 38 0 1941 165 33 0 chr6 136328181 136328514 -52951040 + MER2 DNA MER2_type 1 344 0 1316 195 76 93 chr6 136328514 136328569 -52950985 + MLT2D LTR ERVL 368 414 0 31 42 0 42 chr6 136329040 136329111 -52950443 + AT_rich Low_complexity Low_complexity 1 68 0 599 274 71 55 chr6 136329353 136329663 -52949891 - L2 LINE L2 -567 2747 2433 194 376 47 47 chr6 136330164 136330249 -52949305 - MIR3 SINE MIR -21 187 103 260 214 170 82 chr6 136330362 136330521 -52949033 - MER104 DNA Tc2 -2 178 6 386 274 0 46 chr6 136333710 136333863 -52945691 + C-rich Low_complexity Low_complexity 3 148 0 378 320 0 0 chr6 136333969 136334094 -52945460 + G-rich Low_complexity Low_complexity 1 125 0 183 80 0 0 chr6 136334397 136334422 -52945132 + (TG)n Simple_repeat Simple_repeat 2 26 0 1440 189 124 19 chr6 136336196 136336960 -52942594 - L1MD2 LINE L1 -17 6342 5335 210 354 13 82 chr6 136337624 136337782 -52941772 - L2 LINE L2 0 3272 3126 209 330 46 46 chr6 136338803 136338912 -52940642 - MIR3 SINE MIR -11 197 89 32 95 0 0 chr6 136339452 136339547 -52940007 + AT_rich Low_complexity Low_complexity 1 95 0 2921 54 3 0 chr6 136340749 136341103 -52938451 + THE1A LTR MaLR 1 355 0 222 62 0 0 chr6 136341223 136341255 -52938299 + (TG)n Simple_repeat Simple_repeat 2 33 0 291 54 0 0 chr6 136341406 136341443 -52938111 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1780 149 15 0 chr6 136341453 136341721 -52937833 - AluSq SINE Alu -41 272 1 2173 78 49 0 chr6 136342192 136342476 -52937078 - AluY SINE Alu -13 298 1 21 0 0 0 chr6 136343390 136343411 -52936143 + AT_rich Low_complexity Low_complexity 1 21 0 420 226 11 0 chr6 136343418 136343511 -52936043 + MER94 DNA DNA 37 130 -4 1579 168 35 75 chr6 136344223 136344598 -52934956 + L1MB8 LINE L1 5416 5775 -403 1917 186 48 12 chr6 136344630 136345044 -52934510 + L1MB8 LINE L1 5744 6172 -6 351 271 68 53 chr6 136345457 136345590 -52933964 + MIR SINE MIR 7 141 -121 26 0 0 0 chr6 136346015 136346041 -52933513 + AT_rich Low_complexity Low_complexity 1 26 0 342 324 92 48 chr6 136346391 136346641 -52932913 + MIR SINE MIR 2 262 0 499 318 88 15 chr6 136346826 136347156 -52932398 + L2 LINE L2 2960 3313 0 682 295 183 19 chr6 136347234 136347600 -52931954 - LTR16A LTR ERVL 0 450 25 524 298 300 10 chr6 136347652 136348045 -52931509 - L2 LINE L2 0 3313 2807 562 74 0 21 chr6 136350187 136350282 -52929272 + (TA)n Simple_repeat Simple_repeat 1 93 0 1900 147 3 20 chr6 136350707 136351000 -52928554 + AluJb SINE Alu 6 293 -19 314 267 23 12 chr6 136351147 136351233 -52928321 - MIR SINE MIR -19 243 157 238 282 26 26 chr6 136351299 136351377 -52928177 + MER5B DNA MER1_type 101 178 0 2211 92 16 3 chr6 136351380 136351684 -52927870 + AluSc SINE Alu 1 308 -1 363 96 0 0 chr6 136351684 136351736 -52927818 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 246 262 295 8 chr6 136351740 136351862 -52927692 - MIR SINE MIR -96 166 10 421 258 207 28 chr6 136351862 136352075 -52927479 + MIR SINE MIR 12 262 0 21 0 0 0 chr6 136352211 136352232 -52927322 + AT_rich Low_complexity Low_complexity 1 21 0 222 333 62 35 chr6 136356459 136356603 -52922951 - MIR SINE MIR -114 148 1 328 295 36 0 chr6 136357178 136357290 -52922264 + GA-rich Low_complexity Low_complexity 2 117 0 223 354 144 6 chr6 136358853 136359034 -52920520 - MIR SINE MIR -56 206 1 23 33 0 0 chr6 136361086 136361116 -52918438 + AT_rich Low_complexity Low_complexity 1 30 0 181 289 229 0 chr6 136361347 136361430 -52918124 + L2 LINE L2 3163 3264 -8 2265 74 0 17 chr6 136363289 136363585 -52915969 - AluSc SINE Alu -18 291 1 2714 172 31 2 chr6 136365014 136365461 -52914093 - MER66B LTR ERV1 0 486 27 201 171 0 0 chr6 136365551 136365586 -52913968 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 608 287 51 26 chr6 136365858 136366053 -52913501 + MIR SINE MIR 20 219 -43 297 351 35 37 chr6 136366046 136366379 -52913175 - L2 LINE L2 -321 2951 2623 * 201 74 0 0 chr6 136366488 136366515 -52913039 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 22 80 0 0 chr6 136367018 136367068 -52912486 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr6 136367916 136367941 -52911613 + AT_rich Low_complexity Low_complexity 1 25 0 885 215 9 49 chr6 136368275 136368498 -52911056 + MER20 DNA MER1_type 1 214 -5 2428 70 0 0 chr6 136368802 136369102 -52910452 + AluY SINE Alu 1 300 -11 502 297 113 80 chr6 136369472 136369896 -52909658 + L2 LINE L2 2872 3309 -4 288 172 0 0 chr6 136369900 136369958 -52909596 + GA-rich Low_complexity Low_complexity 2 59 0 202 233 0 67 chr6 136369965 136370025 -52909529 - L2 LINE L2 -24 3289 3234 23 68 0 0 chr6 136370345 136370389 -52909165 + AT_rich Low_complexity Low_complexity 1 44 0 1090 333 61 23 chr6 136371076 136371838 -52907716 - L2 LINE L2 -54 3259 2456 301 336 18 19 chr6 136371817 136371966 -52907588 + MIR SINE MIR 15 156 -62 * 23 33 0 0 chr6 136372043 136372073 -52907481 + AT_rich Low_complexity Low_complexity 1 30 0 2058 126 11 0 chr6 136372085 136372387 -52907167 - AluSq SINE Alu 0 311 7 1669 304 63 23 chr6 136372404 136373058 -52906496 + L3 LINE CR1 422 1101 -476 205 333 11 21 chr6 136373289 136373382 -52906172 - L2 LINE L2 -528 2786 2695 276 330 62 0 chr6 136373467 136373579 -52905975 + L3 LINE CR1 1312 1430 -147 31 44 0 0 chr6 136373881 136373926 -52905628 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chr6 136375204 136375232 -52904322 + AT_rich Low_complexity Low_complexity 1 28 0 1933 137 27 0 chr6 136375232 136375524 -52904030 + AluSx SINE Alu 1 300 -12 2436 157 50 54 chr6 136375527 136375997 -52903557 - L1MC3 LINE L1 -162 7623 7154 2152 107 3 3 chr6 136375997 136376297 -52903257 - AluSx SINE Alu -12 300 1 2436 157 50 54 chr6 136376297 136376330 -52903224 - L1MC3 LINE L1 -631 7154 7122 320 330 110 0 chr6 136377326 136377517 -52902037 - L1 LINE L1 -783 5363 5152 1076 24 0 0 chr6 136378329 136378484 -52901070 + L1PA5 LINE L1 6017 6171 0 209 261 46 31 chr6 136378756 136378821 -52900733 + L2 LINE L2 3247 3312 -1 359 323 127 0 chr6 136380273 136380431 -52899123 - MIR SINE MIR -13 249 72 2327 217 60 11 chr6 136380518 136381182 -52898372 - Charlie2 DNA MER1_type -1 2861 2165 2082 120 0 3 chr6 136381188 136381489 -52898065 - AluSx SINE Alu -12 300 1 266 208 14 42 chr6 136381582 136381654 -52897900 - Charlie2b DNA MER1_type -1675 1107 1038 518 68 14 0 chr6 136381657 136381730 -52897824 + Alu SINE Alu 1 74 -236 352 278 37 31 chr6 136381832 136381994 -52897560 + L1ME3A LINE L1 6000 6162 -8 209 332 73 16 chr6 136382636 136382784 -52896770 - MIR SINE MIR -66 142 5 2073 126 3 3 chr6 136385021 136385315 -52894239 - AluSq SINE Alu -19 294 1 26 0 0 0 chr6 136386448 136386474 -52893080 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr6 136386780 136386801 -52892753 + AT_rich Low_complexity Low_complexity 1 21 0 205 79 79 0 chr6 136387878 136387916 -52891638 + A-rich Low_complexity Low_complexity 2 42 0 1992 231 24 39 chr6 136388422 136389014 -52890540 + L1ME1 LINE L1 4688 5270 -876 1423 205 132 57 chr6 136389017 136389512 -52890042 - MLT1F1 LTR MaLR -7 560 27 2848 192 24 39 chr6 136389520 136390154 -52889400 + L1ME1 LINE L1 5262 5885 -281 1490 203 78 76 chr6 136390158 136390617 -52888937 - MLT1D LTR MaLR -2 503 44 599 277 46 13 chr6 136390637 136390875 -52888679 + L1ME1 LINE L1 5917 6162 -4 2196 48 11 0 chr6 136392711 136392983 -52886571 - AluY SINE Alu 0 311 37 328 139 68 0 chr6 136393452 136393526 -52886028 - MSTC LTR MaLR 0 396 306 614 192 15 8 chr6 136393531 136393661 -52885893 - MSTD-int LTR MaLR -1603 132 2 2042 205 39 0 chr6 136393663 136394044 -52885510 - MSTD LTR MaLR 0 396 1 1530 98 10 0 chr6 136394341 136394545 -52885009 - AluSg/x SINE Alu -14 296 91 233 325 0 12 chr6 136394583 136394666 -52884888 + L2 LINE L2 3186 3267 -5 289 195 11 23 chr6 136395956 136396043 -52883511 + (TA)n Simple_repeat Simple_repeat 1 86 0 286 365 71 6 chr6 136396271 136396441 -52883113 - MIR3 SINE MIR -7 201 21 317 287 84 21 chr6 136396856 136396999 -52882555 - L1ME LINE L1 -317 5804 5653 450 264 88 36 chr6 136397640 136397833 -52881721 - MIR SINE MIR -4 258 56 2211 133 11 8 chr6 136398760 136399114 -52880440 + THE1A LTR MaLR 1 355 0 11389 102 2 8 chr6 136399114 136399519 -52880035 + THE1A-int LTR MaLR 1 407 -1173 1935 138 24 0 chr6 136399519 136399810 -52879744 + AluSx SINE Alu 1 298 -14 11389 102 2 8 chr6 136399810 136400993 -52878561 + THE1A-int LTR MaLR 407 1580 0 2083 125 8 61 chr6 136400993 136401229 -52878325 + THE1A LTR MaLR 1 211 -144 2268 85 10 3 chr6 136401229 136401536 -52878018 + AluY SINE Alu 1 309 -2 2083 125 8 61 chr6 136401536 136401674 -52877880 + THE1A LTR MaLR 211 355 0 304 186 0 0 chr6 136402257 136402316 -52877238 + L2 LINE L2 3255 3313 0 324 0 0 0 chr6 136403259 136403295 -52876259 + (TG)n Simple_repeat Simple_repeat 1 36 0 292 214 0 0 chr6 136403499 136403555 -52875999 + MIR SINE MIR 58 113 -95 1067 185 0 0 chr6 136403658 136403858 -52875696 + L1PB1 LINE L1 1 200 -6663 14751 185 58 18 chr6 136403862 136409856 -52869698 + L1PB1 LINE L1 638 6867 0 195 220 0 0 chr6 136410313 136410363 -52869191 + (TA)n Simple_repeat Simple_repeat 2 51 0 771 250 31 20 chr6 136411223 136411419 -52868135 + L1MA7 LINE L1 417 614 -5689 8246 204 67 67 chr6 136411491 136413138 -52866416 + L1MA7 LINE L1 800 2444 -3960 4540 147 4 1 chr6 136413138 136413866 -52865688 + L1PA15 LINE L1 5432 6161 -4 8246 204 67 67 chr6 136413866 136417263 -52862291 + L1MA7 LINE L1 2444 5954 -450 12478 96 6 7 chr6 136417263 136418086 -52861468 + L1PA7 LINE L1 3506 4328 -1826 2396 62 0 10 chr6 136418086 136418390 -52861164 + AluY SINE Alu 1 301 -10 12478 96 6 7 chr6 136418390 136420231 -52859323 + L1PA7 LINE L1 4328 6146 -8 8246 204 67 67 chr6 136420231 136420299 -52859255 + L1MA7 LINE L1 5954 6020 -384 279 308 60 26 chr6 136420354 136420471 -52859083 - L2 LINE L2 -463 2851 2731 397 283 67 88 chr6 136420507 136420804 -52858750 - L1MEd LINE L1 -5818 301 11 444 255 114 7 chr6 136421052 136421201 -52858353 + HAL1 LINE L1 1715 1879 -628 1352 271 50 44 chr6 136421274 136421890 -52857664 + HAL1 LINE L1 1888 2507 0 35 0 0 0 chr6 136422015 136422050 -52857504 + AT_rich Low_complexity Low_complexity 1 35 0 469 300 138 4 chr6 136422699 136422952 -52856602 + L3b LINE CR1 1155 1441 -142 25 51 0 0 chr6 136423973 136424012 -52855542 + AT_rich Low_complexity Low_complexity 1 39 0 214 294 86 31 chr6 136424841 136425004 -52854550 - L2 LINE L2 -819 2495 2324 1368 203 7 29 chr6 136426153 136426459 -52853095 - AluJo SINE Alu -13 299 1 2401 65 0 13 chr6 136426961 136427271 -52852283 - AluY SINE Alu -5 306 1 239 341 77 0 chr6 136427727 136427818 -52851736 - L2 LINE L2 -5 3267 3170 1107 99 18 23 chr6 136430900 136431071 -52848483 + AluSc SINE Alu 127 296 -13 226 318 52 52 chr6 136431303 136431457 -52848097 - Charlie2 DNA MER1_type -2521 341 188 1732 152 84 9 chr6 136431506 136431849 -52847705 + MER21B LTR ERV1 484 852 -11 249 246 0 0 chr6 136431945 136432002 -52847552 - Charlie2 DNA MER1_type -2721 61 5 407 283 75 19 chr6 136432039 136432239 -52847315 + MIR SINE MIR 20 226 -36 35 0 0 0 chr6 136432709 136432744 -52846810 + AT_rich Low_complexity Low_complexity 1 35 0 345 237 40 0 chr6 136433004 136433080 -52846474 - MER21B LTR ERV1 -617 246 168 416 306 121 0 chr6 136433143 136433300 -52846254 - MIR SINE MIR -74 188 13 1889 157 39 12 chr6 136433869 136434206 -52845348 + MER7A DNA MER2_type 2 345 -1 2390 82 0 0 chr6 136434806 136435112 -52844442 + AluY SINE Alu 1 306 -5 3408 149 42 67 chr6 136435543 136436348 -52843206 - LTR1 LTR ERV1 0 785 1 276 100 0 0 chr6 136436994 136437034 -52842520 + (TG)n Simple_repeat Simple_repeat 1 40 0 1750 206 102 29 chr6 136437387 136437771 -52841783 + L1M4c LINE L1 84 495 -5889 6130 221 31 34 chr6 136437776 136439775 -52839779 + L1M4c LINE L1 1603 3608 -2774 2279 148 40 21 chr6 136439775 136440195 -52839359 - MSTA LTR MaLR 0 428 1 6130 221 31 34 chr6 136440195 136440820 -52838734 + L1M4c LINE L1 3608 4212 -2170 1668 226 16 8 chr6 136440820 136441191 -52838363 + MLT1A2 LTR MaLR 1 374 0 6130 221 31 34 chr6 136441191 136441471 -52838083 + L1M4c LINE L1 4212 4492 -1890 252 224 15 0 chr6 136441573 136441640 -52837914 + L1ME4a LINE L1 6049 6116 -5 2236 150 61 10 chr6 136441717 136442124 -52837430 - MSTA LTR MaLR 0 428 1 312 211 13 0 chr6 136442135 136442211 -52837343 + L1P4 LINE L1 5358 5434 -727 393 226 0 24 chr6 136442549 136442633 -52836921 + AluJ/FLAM SINE Alu 2 83 -219 2227 95 16 0 chr6 136443742 136444046 -52835508 + AluSx SINE Alu 1 309 -3 695 284 108 0 chr6 136444161 136444383 -52835171 - MIR SINE MIR -15 247 2 25 0 0 0 chr6 136444597 136444622 -52834932 + AT_rich Low_complexity Low_complexity 1 25 0 2357 89 0 16 chr6 136444654 136444969 -52834585 + AluY SINE Alu 1 310 -1 2416 67 0 22 chr6 136445077 136445389 -52834165 + AluY SINE Alu 1 305 -6 34 42 0 0 chr6 136445645 136445693 -52833861 + AT_rich Low_complexity Low_complexity 1 48 0 1515 185 143 16 chr6 136446093 136446472 -52833082 - MSTA LTR MaLR 0 428 2 21 57 0 0 chr6 136446719 136446754 -52832800 + AT_rich Low_complexity Low_complexity 1 35 0 433 223 245 54 chr6 136446894 136447078 -52832476 - MLT1G3 LTR MaLR -311 219 1 309 307 87 46 chr6 136447174 136447466 -52832088 - MLT1G3-int LTR MaLR 0 1734 1211 2871 114 31 2 chr6 136447470 136447916 -52831638 + L1PB3 LINE L1 5693 6151 -3 279 256 31 138 chr6 136448598 136448758 -52830796 - MLT1G3-int LTR MaLR -770 601 459 368 298 192 21 chr6 136448845 136449231 -52830323 - L1M4 LINE L1 -2921 3225 2774 745 107 8 0 chr6 136450884 136451005 -52828549 + AluY SINE Alu 190 311 0 210 262 58 78 chr6 136453082 136453185 -52826369 - MIR SINE MIR -6 256 156 2946 94 17 200 chr6 136453189 136453900 -52825654 + LTR12 LTR ERV1 1 581 -133 1411 269 27 14 chr6 136454512 136455029 -52824525 + L1MD1 LINE L1 4085 4608 -1538 758 194 45 13 chr6 136455035 136455190 -52824364 + AluSg/x SINE Alu 135 294 -16 207 139 0 0 chr6 136455212 136455248 -52824306 + (TA)n Simple_repeat Simple_repeat 1 36 0 882 235 54 24 chr6 136455260 136455558 -52823996 + L1MD1 LINE L1 4646 4952 -1194 380 237 23 17 chr6 136455561 136455738 -52823816 + GA-rich Low_complexity Low_complexity 1 178 0 3443 182 39 46 chr6 136455787 136456187 -52823367 + L1MD1 LINE L1 4963 5364 -878 892 132 69 11 chr6 136456187 136456368 -52823186 + L1MA4 LINE L1 6100 6299 -1 3443 182 39 46 chr6 136456368 136456992 -52822562 + L1MD1 LINE L1 5364 5991 -251 731 213 30 30 chr6 136457010 136457211 -52822343 - AluJb SINE Alu 0 322 122 859 191 0 0 chr6 136457211 136457368 -52822186 + L1MD1 LINE L1 6078 6234 -8 26 30 0 0 chr6 136457479 136457512 -52822042 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr6 136458402 136458430 -52821124 + AT_rich Low_complexity Low_complexity 1 28 0 415 293 98 19 chr6 136458471 136458686 -52820868 - LTR33 LTR ERVL -39 482 251 2053 117 3 16 chr6 136459432 136459741 -52819813 + AluSx SINE Alu 1 305 -7 533 252 289 26 chr6 136461035 136461305 -52818249 - L2 LINE L2 -574 2740 2400 238 252 63 77 chr6 136461418 136461561 -52817993 - L2 LINE L2 -868 2446 2306 1331 187 62 73 chr6 136461561 136461930 -52817624 - MLT1A1 LTR MaLR 0 365 1 567 289 46 23 chr6 136461932 136462150 -52817404 - L2 LINE L2 -1006 2308 2086 235 0 0 54 chr6 136462151 136462188 -52817366 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 1482 193 104 0 chr6 136463501 136463770 -52815784 - AluJb SINE Alu -15 297 1 1087 255 214 18 chr6 136463803 136464294 -52815260 - L2 LINE L2 -71 3242 2849 2384 152 80 0 chr6 136464294 136464721 -52814833 + LOR1b LTR ERV1 1 461 0 1087 255 214 18 chr6 136464721 136465060 -52814494 - L2 LINE L2 -464 2849 2256 233 131 123 123 chr6 136465689 136465811 -52813743 + L1ME4a LINE L1 5999 6120 -1 2887 146 14 39 chr6 136466751 136467339 -52812215 - L1MA7 LINE L1 0 6291 5719 1331 117 0 24 chr6 136467340 136467545 -52812009 + L1MA7 LINE L1 5504 5703 -588 2854 3 0 0 chr6 136469007 136469318 -52810236 + AluYb8 SINE Alu 1 311 -7 225 0 0 0 chr6 136469919 136469944 -52809610 + (T)n Simple_repeat Simple_repeat 1 25 0 391 307 107 13 chr6 136470649 136470799 -52808755 - MIR3 SINE MIR -14 194 31 2104 128 10 0 chr6 136471168 136471466 -52808088 - AluSq SINE Alu -12 301 1 1613 187 3 10 chr6 136471672 136471961 -52807593 + AluJo SINE Alu 1 287 -25 437 50 17 0 chr6 136471962 136472022 -52807532 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 588 174 27 7 chr6 136472525 136472674 -52806880 + GA-rich Low_complexity Low_complexity 1 152 0 21 57 0 0 chr6 136472830 136472865 -52806689 + AT_rich Low_complexity Low_complexity 1 35 0 824 272 13 18 chr6 136473074 136473298 -52806256 + MER58A DNA MER1_type 2 224 0 423 218 55 79 chr6 136473946 136474152 -52805402 + MLT1J LTR MaLR 286 425 -21 341 253 11 170 chr6 136476867 136477132 -52802422 + MIR SINE MIR 40 262 0 23 0 0 0 chr6 136477351 136477374 -52802180 + AT_rich Low_complexity Low_complexity 1 23 0 2446 73 0 0 chr6 136477391 136477691 -52801863 + AluY SINE Alu 1 300 -11 198 0 0 0 chr6 136477719 136477741 -52801813 + (CA)n Simple_repeat Simple_repeat 2 23 0 5413 196 49 46 chr6 136477761 136478811 -52800743 + Charlie1a DNA MER1_type 1 1058 -1703 1759 192 0 6 chr6 136478811 136479124 -52800430 - AluJo SINE Alu -1 311 1 5413 196 49 46 chr6 136479124 136479508 -52800046 + Charlie1a DNA MER1_type 1058 1439 -16 439 278 77 5 chr6 136479868 136480077 -52799477 + L1M4 LINE L1 3160 3383 -2763 415 283 98 5 chr6 136480096 136480280 -52799274 + L1M4 LINE L1 3424 3624 -2522 1016 297 276 26 chr6 136480283 136481451 -52798103 - L2 LINE L2 -800 2514 1055 653 291 68 8 chr6 136482278 136482512 -52797042 - MIR SINE MIR -1 261 14 295 237 13 0 chr6 136482731 136482807 -52796747 + MER116 DNA Mariner 3 79 -1 213 318 30 15 chr6 136484153 136484219 -52795335 - MIR3 SINE MIR -34 174 108 38 68 0 0 chr6 136484873 136484946 -52794608 + AT_rich Low_complexity Low_complexity 1 73 0 201 129 0 0 chr6 136485222 136485253 -52794301 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 276 30 0 0 chr6 136485256 136485289 -52794265 + (GGGAA)n Simple_repeat Simple_repeat 3 35 0 692 332 42 10 chr6 136485767 136486077 -52793477 - L3 LINE CR1 -70 1507 1188 21 57 0 0 chr6 136486813 136486848 -52792706 + AT_rich Low_complexity Low_complexity 1 35 0 455 320 80 10 chr6 136487430 136487630 -52791924 + MIR SINE MIR 48 261 -1 27 0 0 0 chr6 136487821 136487848 -52791706 + AT_rich Low_complexity Low_complexity 1 27 0 418 357 0 42 chr6 136488668 136488836 -52790718 + MIR SINE MIR 3 163 -99 288 309 107 39 chr6 136490085 136490263 -52789291 + MIR SINE MIR 14 203 -59 203 204 23 0 chr6 136491450 136491494 -52788060 - MIR SINE MIR -117 145 101 27 49 0 0 chr6 136491653 136491694 -52787860 + AT_rich Low_complexity Low_complexity 1 41 0 2436 42 0 3 chr6 136492065 136492353 -52787201 - AluY SINE Alu -16 295 9 2622 45 0 0 chr6 136492582 136492890 -52786664 - AluY SINE Alu -3 308 1 2026 126 10 0 chr6 136493977 136494278 -52785276 + AluSx SINE Alu 1 304 -8 25 51 0 0 chr6 136495421 136495460 -52784094 + AT_rich Low_complexity Low_complexity 1 39 0 2216 84 0 23 chr6 136496620 136496928 -52782626 + AluY SINE Alu 1 301 -10 207 0 0 0 chr6 136498212 136498235 -52781319 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 705 348 62 9 chr6 136498257 136498593 -52780961 - L3 LINE CR1 -52 1525 1172 200 232 19 19 chr6 136500403 136500467 -52779087 - MIR SINE MIR -60 148 84 288 295 0 0 chr6 136501752 136501847 -52777707 - L1MC/D LINE L1 -502 5831 5737 838 226 5 27 chr6 136501891 136502077 -52777477 - AluJo SINE Alu -82 230 49 6157 244 29 18 chr6 136502137 136504005 -52775549 - L1MC/D LINE L1 -1928 4218 2326 1400 177 102 8 chr6 136504005 136504270 -52775284 - AluJb SINE Alu -22 290 1 6157 244 29 18 chr6 136504270 136504315 -52775239 - L1MC/D LINE L1 -3820 2326 2283 640 117 0 0 chr6 136504323 136504417 -52775137 - AluSg/x SINE Alu -7 302 209 21 0 0 0 chr6 136505625 136505646 -52773908 + AT_rich Low_complexity Low_complexity 1 21 0 1607 219 5 11 chr6 136508189 136508563 -52770991 - L1ME1 LINE L1 -5 6161 5790 835 288 135 7 chr6 136508715 136509167 -52770387 + LTR33A LTR ERVL 8 517 -6 376 262 63 32 chr6 136509228 136509354 -52770200 - MIR SINE MIR -68 194 65 2392 72 0 3 chr6 136509489 136509795 -52769759 + AluY SINE Alu 1 305 -6 747 301 65 82 chr6 136509798 136510465 -52769089 - HERV16-B3 LTR ERVL -2374 2622 1971 320 148 0 0 chr6 136510736 136510790 -52768764 - MLT2A1 LTR ERVL 0 453 400 281 197 14 0 chr6 136510790 136510861 -52768693 + (TG)n Simple_repeat Simple_repeat 2 73 0 2701 72 69 8 chr6 136510861 136511238 -52768316 - MLT2A1 LTR ERVL -44 400 1 359 58 0 0 chr6 136511257 136511309 -52768245 - L1PA15 LINE L1 -13 6152 6101 442 171 0 18 chr6 136511541 136511652 -52767902 + CT-rich Low_complexity Low_complexity 4 112 0 203 330 131 46 chr6 136512749 136513137 -52766417 - L2 LINE L2 -556 2758 2338 380 283 62 14 chr6 136513200 136513345 -52766209 - MIR SINE MIR -70 192 41 454 336 137 38 chr6 136513422 136514101 -52765453 - L2 LINE L2 -963 2351 1606 443 288 46 0 chr6 136514745 136514898 -52764656 - MER103 DNA DNA 0 166 7 258 32 0 0 chr6 136515908 136515939 -52763615 + (TG)n Simple_repeat Simple_repeat 2 32 0 654 300 92 0 chr6 136516619 136516859 -52762695 - HERV16-B3 LTR ERVL -3647 1349 1088 821 216 22 22 chr6 136516882 136517063 -52762491 + MER58A DNA MER1_type 32 212 -12 257 191 0 0 chr6 136517082 136517124 -52762430 - HERV16-B3 LTR ERVL -3908 1088 1047 1307 343 48 9 chr6 136517269 136517853 -52761701 - HERV16-B3 LTR ERVL -4122 874 268 5536 154 30 10 chr6 136518394 136519970 -52759584 - L1PA16 LINE L1 -2 6164 4558 2419 76 0 0 chr6 136521275 136521577 -52757977 + AluY SINE Alu 1 302 -9 1658 207 99 67 chr6 136521884 136522421 -52757133 - MLT2B3 LTR ERVL 0 554 1 2781 19 0 0 chr6 136522495 136522804 -52756750 + AluYb8 SINE Alu 1 309 -9 22 0 0 0 chr6 136522967 136522989 -52756565 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 136523073 136523096 -52756458 + AT_rich Low_complexity Low_complexity 1 23 0 1559 97 0 18 chr6 136523267 136523495 -52756059 - pTR5 LTR ERV1 -2043 395 172 356 245 10 0 chr6 136523498 136523596 -52755958 - LTR30 LTR ERV1 -80 642 544 5300 131 115 33 chr6 136523596 136524701 -52754853 - pTR5 LTR ERV1 -413 2025 743 23 54 0 0 chr6 136525273 136525310 -52754244 + AT_rich Low_complexity Low_complexity 1 37 0 537 276 139 34 chr6 136525650 136526096 -52753458 + HAL1b LINE L1 555 1047 -301 793 278 80 42 chr6 136526135 136526519 -52753035 - MER57A LTR ERV1 0 403 1 379 309 0 7 chr6 136526598 136526737 -52752817 + HAL1b LINE L1 1180 1317 -31 344 270 72 79 chr6 136527444 136527596 -52751958 - MIR3 SINE MIR -41 167 17 248 347 63 26 chr6 136528229 136528419 -52751135 - L2 LINE L2 -4 3309 3113 181 286 14 43 chr6 136528708 136528778 -52750776 + L2 LINE L2 1066 1133 -2181 2060 134 0 10 chr6 136528964 136529269 -52750285 - AluSx SINE Alu -10 302 1 1032 265 88 16 chr6 136529787 136530342 -52749212 + L1MB7 LINE L1 2938 3532 -2614 962 298 64 54 chr6 136530352 136530818 -52748736 + REP3 LTR ERV 6 476 -86 2068 208 90 146 chr6 136530925 136531482 -52748072 + L1MB7 LINE L1 3533 4119 -2027 213 94 0 0 chr6 136531482 136531514 -52748040 + (TAA)n Simple_repeat Simple_repeat 3 34 0 2068 208 90 146 chr6 136531514 136531598 -52747956 + L1MB7 LINE L1 4119 4206 -1940 195 42 0 0 chr6 136531598 136531622 -52747932 + (CA)n Simple_repeat Simple_repeat 1 24 0 2068 208 90 146 chr6 136531622 136531659 -52747895 + L1MB7 LINE L1 4206 4243 -1903 1213 99 25 0 chr6 136531659 136531820 -52747734 - AluSq SINE Alu -66 247 83 2068 208 90 146 chr6 136531820 136532385 -52747169 + L1MB7 LINE L1 4243 4860 -1286 * 4623 201 59 9 chr6 136532381 136534303 -52745251 - L1MB8 LINE L1 0 6178 4150 216 0 0 0 chr6 136534303 136534327 -52745227 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 4623 201 59 9 chr6 136534327 136534392 -52745162 - L1MB8 LINE L1 -2028 4150 4090 2586 239 58 28 chr6 136534388 136535426 -52744128 + L1MB7 LINE L1 4847 5939 -245 * 2189 116 0 0 chr6 136535426 136535729 -52743825 - AluSx SINE Alu -9 303 1 2586 239 58 28 chr6 136535729 136535965 -52743589 + L1MB7 LINE L1 5939 6166 -18 331 309 59 55 chr6 136536041 136536261 -52743293 + L1ME4a LINE L1 4110 4330 -1816 281 227 36 18 chr6 136536278 136536388 -52743166 + (TA)n Simple_repeat Simple_repeat 1 112 0 341 284 99 10 chr6 136536391 136536683 -52742871 + L1ME4a LINE L1 4399 4716 -1430 23 0 0 0 chr6 136539197 136539220 -52740334 + AT_rich Low_complexity Low_complexity 1 23 0 553 291 79 18 chr6 136539601 136539828 -52739726 + MIR SINE MIR 3 243 -19 410 288 82 27 chr6 136541798 136542017 -52737537 + L1ME4a LINE L1 5657 5887 -234 695 303 55 5 chr6 136542894 136543112 -52736442 - MIR SINE MIR -5 257 29 316 301 73 8 chr6 136543133 136543256 -52736298 - MIR SINE MIR -16 246 116 334 336 63 0 chr6 136544177 136544320 -52735234 + L2 LINE L2 2979 3130 -183 347 239 23 11 chr6 136544320 136544408 -52735146 + MER94 DNA DNA 1 89 -45 441 240 47 88 chr6 136544437 136544608 -52734946 + L2 LINE L2 3124 3287 -26 2167 67 0 33 chr6 136544609 136544908 -52734646 + AluY SINE Alu 1 289 -22 701 285 113 44 chr6 136544992 136545468 -52734086 + MLT1H1 LTR MaLR 9 549 0 369 279 174 7 chr6 136545995 136546271 -52733283 - L1ME4a LINE L1 -70 6051 5730 2219 84 16 7 chr6 136547521 136547829 -52731725 - AluY SINE Alu 0 311 1 3560 83 26 2 chr6 136548088 136548584 -52730970 - L1PA13 LINE L1 -3 6160 5653 180 326 249 11 chr6 136548654 136548835 -52730719 - MIR SINE MIR -26 236 13 1532 240 65 50 chr6 136548886 136549345 -52730209 - LTR40a LTR ERVL -53 466 1 289 221 11 39 chr6 136549726 136549829 -52729725 + LTR40a LTR ERVL 118 170 -292 550 56 0 0 chr6 136552109 136552181 -52727373 - AluSc SINE Alu -7 302 231 2169 93 0 7 chr6 136552182 136552471 -52727083 - AluSc SINE Alu -22 287 1 212 344 11 11 chr6 136552951 136553044 -52726510 + L2 LINE L2 1191 1283 -2031 417 20 0 0 chr6 136553047 136553097 -52726457 + (TG)n Simple_repeat Simple_repeat 2 51 0 1047 129 83 21 chr6 136553234 136553427 -52726127 - L1PA16 LINE L1 -3 6163 5959 1006 274 51 36 chr6 136553962 136554429 -52725125 + MLT1C LTR MaLR 1 467 0 25 51 0 0 chr6 136554434 136554473 -52725081 + AT_rich Low_complexity Low_complexity 1 39 0 289 321 19 19 chr6 136554919 136555025 -52724529 - L2 LINE L2 -556 2758 2653 315 0 0 0 chr6 136556921 136556956 -52722598 + (TG)n Simple_repeat Simple_repeat 1 35 0 299 400 44 0 chr6 136557204 136557409 -52722145 - L2 LINE L2 -219 3053 2840 465 298 42 15 chr6 136557575 136557763 -52721791 + MIR SINE MIR 3 193 -65 330 344 96 13 chr6 136557850 136558007 -52721547 + MIR SINE MIR 20 189 -73 384 87 0 223 chr6 136558015 136558118 -52721436 - MADE1 DNA Mariner 0 80 1 227 200 133 40 chr6 136558639 136558714 -52720840 - MIR SINE MIR -95 167 86 21 0 0 0 chr6 136560206 136560227 -52719327 + AT_rich Low_complexity Low_complexity 1 21 0 194 234 85 0 chr6 136560276 136560323 -52719231 + L3 LINE CR1 1204 1254 -323 5595 157 68 41 chr6 136560507 136561086 -52718468 - Tigger3b DNA MER2_type -1797 1231 669 1716 68 5 0 chr6 136561086 136561307 -52718247 - AluY SINE Alu -60 251 30 5595 157 68 41 chr6 136561307 136561380 -52718174 - Tigger3b DNA MER2_type -2359 669 599 441 0 0 0 chr6 136561380 136561429 -52718125 + (CA)n Simple_repeat Simple_repeat 2 50 0 5595 157 68 41 chr6 136561429 136561966 -52717588 - Tigger3b DNA MER2_type -2429 599 9 515 229 98 74 chr6 136562024 136562292 -52717262 - MER52A LTR ERV1 -10 495 275 615 202 0 8 chr6 136562297 136562416 -52717138 - LTR28 LTR ERV1 -902 118 1 3487 282 107 18 chr6 136562489 136563641 -52715913 + L2 LINE L2 1419 2777 -536 2813 12 0 9 chr6 136563641 136563962 -52715592 + AluYb8 SINE Alu 1 318 0 3487 282 107 18 chr6 136563962 136564545 -52715009 + L2 LINE L2 2777 3307 -6 362 276 147 0 chr6 136564570 136564686 -52714868 + MIR SINE MIR 11 143 -119 566 198 0 10 chr6 136564692 136564793 -52714761 + FLAM_A SINE Alu 1 100 -42 25 31 0 0 chr6 136564814 136564846 -52714708 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr6 136565011 136565054 -52714500 + AT_rich Low_complexity Low_complexity 1 43 0 32 67 0 0 chr6 136565206 136565266 -52714288 + AT_rich Low_complexity Low_complexity 1 60 0 27 49 0 0 chr6 136567308 136567349 -52712205 + AT_rich Low_complexity Low_complexity 1 41 0 380 354 138 31 chr6 136568469 136568947 -52710607 - L2 LINE L2 -1217 2097 1569 484 272 149 43 chr6 136568972 136569207 -52710347 - MIR SINE MIR -2 260 1 477 294 86 10 chr6 136569491 136569688 -52709866 - MIR SINE MIR -50 212 1 21 57 0 0 chr6 136570315 136570350 -52709204 + AT_rich Low_complexity Low_complexity 1 35 0 1241 77 0 0 chr6 136570764 136570919 -52708635 + U1 snRNA snRNA 1 155 -10 2093 144 3 0 chr6 136571697 136572009 -52707545 + AluSq SINE Alu 1 313 0 24 32 0 0 chr6 136572370 136572401 -52707153 + AT_rich Low_complexity Low_complexity 1 31 0 823 328 48 11 chr6 136572824 136573175 -52706379 - MLT1J2 LTR MaLR -56 394 31 1136 241 91 47 chr6 136573181 136573231 -52706323 + MLT1C LTR MaLR 1 47 -420 2363 34 9 44 chr6 136573231 136573551 -52706003 - AluY SINE Alu -2 309 1 1136 241 91 47 chr6 136573551 136573928 -52705626 + MLT1C LTR MaLR 47 447 -20 347 320 87 63 chr6 136573998 136574298 -52705256 + L1MEd LINE L1 90 396 -5809 880 211 73 50 chr6 136574304 136574519 -52705035 - MER33 DNA MER1_type -2261 324 98 688 240 0 0 chr6 136574519 136574648 -52704906 + FLAM_A SINE Alu 1 129 -4 880 211 73 50 chr6 136574648 136574749 -52704805 - MER33 DNA MER1_type -2487 98 1 345 271 8 0 chr6 136574752 136574870 -52704684 + L1MEd LINE L1 2271 2389 -4007 3029 287 53 16 chr6 136574917 136576245 -52703309 + L1MEc LINE L1 834 2048 -4895 21 0 0 0 chr6 136576343 136576364 -52703190 + AT_rich Low_complexity Low_complexity 1 21 0 2226 114 7 0 chr6 136581011 136581317 -52698237 - AluSg SINE Alu -2 308 1 682 300 147 37 chr6 136581535 136582242 -52697312 + L2 LINE L2 1227 2011 -1303 24 32 0 0 chr6 136582761 136582792 -52696762 + AT_rich Low_complexity Low_complexity 1 31 0 1341 229 32 32 chr6 136583522 136583894 -52695660 - MLT1A2 LTR MaLR -2 372 1 990 219 76 78 chr6 136584759 136585156 -52694398 - MSTD LTR MaLR 0 396 1 22 56 0 0 chr6 136585248 136585284 -52694270 + AT_rich Low_complexity Low_complexity 1 36 0 617 253 30 21 chr6 136585741 136585974 -52693580 + LTR55 LTR ERV 288 522 -26 254 259 0 0 chr6 136586321 136586379 -52693175 - MER58 DNA MER1_type -8 2412 2355 496 226 15 73 chr6 136586419 136586439 -52693115 - MER58C DNA MER1_type -86 129 109 24886 43 1 3 chr6 136586439 136590340 -52689214 - L1PA5 LINE L1 0 6154 2258 496 226 15 73 chr6 136590340 136590456 -52689098 - MER58C DNA MER1_type -106 109 1 244 403 34 7 chr6 136590507 136590656 -52688898 + L2 LINE L2 2902 3054 -218 3982 271 51 54 chr6 136591001 136592784 -52686770 + L1MEc LINE L1 48 1824 -4902 2143 263 88 18 chr6 136592809 136594425 -52685129 + L1MEc LINE L1 2081 3933 -3008 1120 168 0 0 chr6 136594887 136595060 -52684494 + AluSx SINE Alu 2 174 -138 180 365 0 58 chr6 136596069 136596173 -52683381 - L2 LINE L2 -346 2926 2829 28 61 0 0 chr6 136596438 136596487 -52683067 + AT_rich Low_complexity Low_complexity 1 49 0 466 86 100 0 chr6 136596557 136596627 -52682927 - MADE1 DNA Mariner -3 77 1 21 0 0 0 chr6 136596722 136596743 -52682811 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 136596794 136596818 -52682736 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr6 136596863 136596883 -52682671 + (TC)n Simple_repeat Simple_repeat 1 20 0 313 314 78 20 chr6 136597541 136597694 -52681860 - MIR SINE MIR -52 210 49 279 259 24 0 chr6 136598300 136598385 -52681169 + Charlie8 DNA MER1_type 62 148 -2269 445 178 28 0 chr6 136599155 136599262 -52680292 + CT-rich Low_complexity Low_complexity 3 112 0 2122 103 10 0 chr6 136599264 136599566 -52679988 - AluSg SINE Alu -5 305 1 3347 151 80 58 chr6 136600303 136601043 -52678511 + L1PB4 LINE L1 5397 6152 -4 21 71 0 0 chr6 136601044 136601086 -52678468 + AT_rich Low_complexity Low_complexity 1 42 0 775 351 58 38 chr6 136601330 136601986 -52677568 + L1M4 LINE L1 37 705 -5250 7705 214 52 35 chr6 136602098 136603510 -52676044 + L1M3f LINE L1 556 1942 -4386 2015 13 52 0 chr6 136603510 136603743 -52675811 + AluYa5 SINE Alu 48 292 -19 7705 214 52 35 chr6 136603743 136605901 -52673653 + L1M3f LINE L1 1942 4168 -2160 4030 202 110 131 chr6 136605984 136607776 -52671778 - MER52A LTR ERV1 0 1755 1 270 331 97 31 chr6 136608085 136608375 -52671179 - L2 LINE L2 -61 3252 2944 209 246 58 14 chr6 136608389 136608458 -52671096 + MIR SINE MIR 176 247 -15 21 0 0 0 chr6 136608612 136608633 -52670921 + AT_rich Low_complexity Low_complexity 1 21 0 188 301 60 24 chr6 136609038 136609121 -52670433 + MIR3 SINE MIR 121 206 -2 23 105 0 0 chr6 136609821 136609907 -52669647 + AT_rich Low_complexity Low_complexity 1 86 0 234 105 0 0 chr6 136610282 136610320 -52669234 + (TG)n Simple_repeat Simple_repeat 2 39 0 217 308 6 83 chr6 136610492 136610648 -52668906 + L2 LINE L2 3118 3261 -52 2029 196 40 5 chr6 136611099 136611501 -52668053 + MER47B DNA MER2_type 2 417 -1 34 42 0 0 chr6 136611682 136611730 -52667824 + AT_rich Low_complexity Low_complexity 1 48 0 313 337 67 32 chr6 136611742 136612024 -52667530 + L1M4 LINE L1 2798 3089 -2945 198 0 0 0 chr6 136612321 136612343 -52667211 + (A)n Simple_repeat Simple_repeat 1 22 0 2339 64 3 13 chr6 136612344 136612658 -52666896 + AluY SINE Alu 1 311 0 5935 210 68 89 chr6 136612673 136614990 -52664564 - L1M4 LINE L1 -625 5553 3314 398 118 0 0 chr6 136614990 136615058 -52664496 - L1MA7 LINE L1 0 6291 6224 5935 210 68 89 chr6 136615058 136615411 -52664143 - L1M4 LINE L1 -2864 3314 2955 37 0 0 0 chr6 136616983 136617020 -52662534 + AT_rich Low_complexity Low_complexity 1 37 0 356 301 116 0 chr6 136617292 136617438 -52662116 - MIR3 SINE MIR -13 195 33 726 161 61 22 chr6 136620604 136620805 -52658749 + L1MA7 LINE L1 6077 6291 -9 24 0 0 0 chr6 136621163 136621187 -52658367 + AT_rich Low_complexity Low_complexity 1 24 0 3140 175 34 3 chr6 136621476 136622115 -52657439 - L1MA8 LINE L1 -1241 4905 4247 2969 165 97 18 chr6 136622113 136622941 -52656613 + L1MA8 LINE L1 4916 5831 -460 * 228 86 0 0 chr6 136622941 136622976 -52656578 + (CA)n Simple_repeat Simple_repeat 2 36 0 2969 165 97 18 chr6 136622976 136623152 -52656402 + L1MA8 LINE L1 5831 5992 -299 1364 95 9 5 chr6 136623159 136623370 -52656184 + L1MA8 LINE L1 6077 6288 -3 453 336 82 34 chr6 136624706 136625060 -52654494 + MLT1J LTR MaLR 2 372 -139 39 38 0 0 chr6 136626512 136626565 -52652989 + AT_rich Low_complexity Low_complexity 1 53 0 2191 79 7 0 chr6 136626571 136626886 -52652668 + AluY SINE Alu 2 318 0 366 326 38 43 chr6 136626899 136627083 -52652471 + MIR3 SINE MIR 21 203 -5 904 221 48 10 chr6 136627252 136627460 -52652094 - L1ME1 LINE L1 -19 6147 5932 267 243 43 14 chr6 136627608 136627678 -52651876 - MIR SINE MIR -118 144 73 333 250 42 49 chr6 136627682 136627833 -52651721 + MLT1J LTR MaLR 351 605 -10 665 207 16 3 chr6 136627985 136628129 -52651425 - L1PA16 LINE L1 0 6166 6023 1333 166 54 36 chr6 136628303 136628576 -52650978 + AluJo SINE Alu 1 279 -30 2228 145 56 7 chr6 136628576 136628984 -52650570 - MSTA LTR MaLR 0 428 1 31 26 0 0 chr6 136628993 136629031 -52650523 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 136629306 136629327 -52650227 + AT_rich Low_complexity Low_complexity 1 21 0 2172 74 2 1 chr6 136629514 136629814 -52649740 - L1PA6 LINE L1 -261 5890 5589 1199 67 12 0 chr6 136629814 136629972 -52649582 + L1PA6 LINE L1 5989 6154 0 640 297 28 16 chr6 136631487 136631669 -52647885 - MIR SINE MIR -30 232 49 341 359 0 21 chr6 136631942 136632087 -52647467 + MLT1K LTR MaLR 94 235 -353 252 298 170 14 chr6 136632234 136632375 -52647179 + MLT1L LTR MaLR 449 611 -4 1748 78 0 9 chr6 136632444 136632675 -52646879 + AluY SINE Alu 1 229 -82 618 314 10 10 chr6 136633395 136633602 -52645952 - MIR SINE MIR -51 211 5 325 351 82 35 chr6 136635444 136635786 -52643768 + L2 LINE L2 2494 2851 -463 367 336 70 8 chr6 136636027 136636155 -52643399 + L2 LINE L2 3137 3272 0 607 299 35 35 chr6 136636770 136637001 -52642553 + MIR SINE MIR 2 232 -30 520 249 42 42 chr6 136637211 136637277 -52642277 + L2 LINE L2 3095 3160 -153 1186 233 13 54 chr6 136637277 136637591 -52641963 - AluJo SINE Alu -1 301 1 520 249 42 42 chr6 136637591 136637713 -52641841 + L2 LINE L2 3159 3283 -30 1828 181 0 0 chr6 136637910 136638208 -52641346 + AluJb SINE Alu 1 298 -14 292 288 122 14 chr6 136639268 136639407 -52640147 + MIR SINE MIR 96 249 -13 5592 119 52 64 chr6 136639513 136640680 -52638874 + pTR5 LTR ERV1 741 2025 -413 362 204 41 31 chr6 136640680 136640778 -52638776 + LTR30 LTR ERV1 544 642 -80 1240 93 67 5 chr6 136640779 136640972 -52638582 + LTR12 LTR ERV1 377 581 -133 1306 77 12 0 chr6 136641239 136641409 -52638145 - AluY SINE Alu -19 292 121 238 233 0 33 chr6 136641505 136641565 -52637989 + MLT1F1 LTR MaLR 67 124 -443 335 251 0 2 chr6 136641565 136641652 -52637902 + L1MC3 LINE L1 7205 7490 -505 297 154 67 106 chr6 136641653 136641757 -52637797 + LTR54 LTR ERV1 59 158 -352 1982 209 47 28 chr6 136641899 136642406 -52637148 + L1MD3 LINE L1 7478 7994 -1 25 31 0 0 chr6 136642407 136642439 -52637115 + AT_rich Low_complexity Low_complexity 1 32 0 838 209 233 32 chr6 136642850 136643099 -52636455 - AluJo SINE Alu -3 299 1 383 308 101 18 chr6 136643967 136644136 -52635418 - MIR SINE MIR -1 261 79 186 296 19 19 chr6 136644529 136644583 -52634971 - MIR SINE MIR -133 75 22 787 266 57 50 chr6 136645733 136646015 -52633539 - L3b LINE CR1 -113 1470 1187 22 80 0 0 chr6 136647527 136647577 -52631977 + AT_rich Low_complexity Low_complexity 1 50 0 1684 181 7 16 chr6 136649709 136650013 -52629541 + AluJo SINE Alu 1 301 -11 802 275 67 12 chr6 136650136 136650376 -52629178 + MIR SINE MIR 2 254 -8 336 64 0 0 chr6 136650462 136650509 -52629045 + (TG)n Simple_repeat Simple_repeat 2 48 0 475 277 132 13 chr6 136650577 136650736 -52628818 - MER5B DNA MER1_type 0 178 1 21 71 0 0 chr6 136650755 136650797 -52628757 + AT_rich Low_complexity Low_complexity 1 42 0 327 320 198 5 chr6 136651163 136651360 -52628194 - MIR SINE MIR 0 262 28 25 31 0 0 chr6 136651442 136651474 -52628080 + AT_rich Low_complexity Low_complexity 1 32 0 316 375 80 42 chr6 136652249 136652819 -52626735 - L2 LINE L2 -840 2474 1880 2275 166 80 21 chr6 136652819 136653296 -52626258 + MLT1D LTR MaLR 1 505 0 316 375 80 42 chr6 136653296 136653314 -52626240 - L2 LINE L2 -1434 1880 1864 685 271 6 0 chr6 136653387 136653553 -52626001 + MIR SINE MIR 96 262 0 444 281 82 97 chr6 136653741 136654207 -52625347 + MLT1J LTR MaLR 1 459 -52 234 278 124 0 chr6 136654374 136654471 -52625083 - MIR SINE MIR -1 261 153 13982 141 29 4 chr6 136654473 136656760 -52622794 - Tigger1 DNA MER2_type 0 2418 74 348 338 21 7 chr6 136656794 136656939 -52622615 - MIR SINE MIR -114 148 2 22 35 0 0 chr6 136657299 136657328 -52622226 + AT_rich Low_complexity Low_complexity 1 29 0 674 260 12 17 chr6 136657967 136658140 -52621414 - MIR SINE MIR -26 236 65 803 276 28 0 chr6 136658363 136658580 -52620974 - MIR SINE MIR -28 234 12 340 324 143 48 chr6 136659099 136659540 -52620014 - L2 LINE L2 0 3313 2831 965 288 33 21 chr6 136659709 136660039 -52619515 - LTR16B LTR ERVL 0 464 131 299 82 55 41 chr6 136660245 136660318 -52619236 + GA-rich Low_complexity Low_complexity 2 75 0 279 275 26 43 chr6 136660928 136661108 -52618446 - MLT1J2 LTR MaLR 0 420 281 351 202 36 12 chr6 136661177 136661261 -52618293 - MLT1J2 LTR MaLR -282 168 83 365 313 106 18 chr6 136662737 136662964 -52616590 + MIR SINE MIR 12 258 -4 1967 131 37 10 chr6 136662982 136663546 -52616008 + LTR24C LTR ERV1 1 635 0 1197 124 0 0 chr6 136663789 136663984 -52615570 - AluSg/x SINE Alu 0 318 124 351 361 47 63 chr6 136664013 136664238 -52615316 + L1ME LINE L1 424 644 -5728 2070 212 38 70 chr6 136664238 136664870 -52614684 + LTR9 LTR ERV1 1 612 0 351 361 47 63 chr6 136664870 136664943 -52614611 + L1ME LINE L1 644 717 -5655 336 270 148 43 chr6 136665338 136665760 -52613794 + L1ME LINE L1 1023 1353 -5031 2567 179 2 2 chr6 136665792 136666216 -52613338 + MSTB LTR MaLR 1 424 -2 8128 194 51 9 chr6 136666229 136667804 -52611750 + MSTB-int LTR MaLR 11 1651 0 2228 187 55 0 chr6 136667806 136668208 -52611346 + MSTB LTR MaLR 3 426 0 965 266 46 46 chr6 136668272 136668775 -52610779 + L1ME LINE L1 1554 2056 -4507 1819 224 44 15 chr6 136668776 136669254 -52610300 + L1MCc LINE L1 18 509 -5914 434 325 25 10 chr6 136669468 136669665 -52609889 + LTR67 LTR ERVL 358 557 0 648 263 6 12 chr6 136670238 136670409 -52609145 - MER5B DNA MER1_type -1 177 8 182 284 136 0 chr6 136670432 136670513 -52609041 + MER5A DNA MER1_type 21 112 -77 * 191 219 24 0 chr6 136670505 136670546 -52609008 - MER5A DNA MER1_type -114 75 34 332 272 18 70 chr6 136671036 136671150 -52608404 + MIR SINE MIR 87 194 -68 * 553 364 60 33 chr6 136671148 136671733 -52607821 + L2 LINE L2 2653 3272 0 399 258 0 31 chr6 136671901 136671998 -52607556 + L2 LINE L2 3218 3311 -2 580 237 0 0 chr6 136672521 136672635 -52606919 - MER81 DNA DNA 0 114 1 2031 122 10 3 chr6 136673563 136673857 -52605697 + AluY SINE Alu 1 296 -15 840 195 11 6 chr6 136674336 136674510 -52605044 - Zaphod DNA AcHobo -16 4015 3841 997 143 20 0 chr6 136674511 136674684 -52604870 + FRAM SINE Alu 1 175 0 660 200 126 5 chr6 136674741 136674931 -52604623 - Zaphod DNA AcHobo -215 3816 3604 334 174 75 65 chr6 136674931 136675224 -52604330 - Zaphod DNA AcHobo -3042 989 694 630 290 92 24 chr6 136675288 136675495 -52604059 - Zaphod DNA AcHobo -3810 221 1 27 0 0 0 chr6 136675680 136675707 -52603847 + AT_rich Low_complexity Low_complexity 1 27 0 2599 150 21 6 chr6 136676263 136676736 -52602818 - L1MB2 LINE L1 -3 6168 5689 359 340 11 11 chr6 136676737 136676922 -52602632 - L1MC4a LINE L1 -1902 5906 5722 327 49 0 0 chr6 136677598 136677639 -52601915 + (TG)n Simple_repeat Simple_repeat 2 42 0 1747 191 3 38 chr6 136678189 136678555 -52600999 + MLT1B LTR MaLR 1 353 -37 24 0 0 0 chr6 136678713 136678737 -52600817 + AT_rich Low_complexity Low_complexity 1 24 0 389 170 54 45 chr6 136679004 136679116 -52600438 + MER20B DNA MER1_type 286 398 -385 594 255 37 127 chr6 136679149 136679586 -52599968 + L2 LINE L2 2718 3121 -192 204 252 138 114 chr6 136680246 136680304 -52599250 + MIR SINE MIR 16 71 -137 1614 196 11 0 chr6 136680304 136680584 -52598970 - AluJo SINE Alu -28 284 2 204 252 138 114 chr6 136680584 136680648 -52598906 + MIR SINE MIR 71 141 -67 316 284 39 8 chr6 136681191 136681318 -52598236 - MIR SINE MIR -25 237 107 2183 119 0 0 chr6 136681692 136681987 -52597567 - AluSg SINE Alu -15 295 1 1862 161 3 3 chr6 136682246 136682532 -52597022 - AluJo SINE Alu -25 287 2 25 0 0 0 chr6 136682613 136682638 -52596916 + AT_rich Low_complexity Low_complexity 1 25 0 208 254 0 53 chr6 136682741 136682855 -52596699 + A-rich Low_complexity Low_complexity 1 108 0 6669 182 57 4 chr6 136683059 136685109 -52594445 + L1PA8 LINE L1 4001 6159 -13 25547 45 13 0 chr6 136685708 136689017 -52590537 + L1PA4 LINE L1 2046 5398 -748 2626 52 11 6 chr6 136689275 136689622 -52589932 + L1PA4 LINE L1 5805 6153 -2 688 159 40 0 chr6 136689624 136689750 -52589804 - MIR SINE MIR -57 205 75 375 231 19 0 chr6 136689760 136689864 -52589690 - HAL1 LINE L1 -166 2341 2236 276 323 16 0 chr6 136690194 136690318 -52589236 - HAL1 LINE L1 -354 2153 2028 1233 276 101 48 chr6 136690478 136691433 -52588121 - HAL1 LINE L1 -698 1809 805 482 70 14 0 chr6 136691634 136691705 -52587849 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 441 308 58 83 chr6 136691804 136692165 -52587389 - HAL1 LINE L1 -2109 398 47 245 310 140 10 chr6 136692256 136692356 -52587198 - L2 LINE L2 -1 3312 3200 513 372 107 25 chr6 136692358 136693238 -52586316 - L2 LINE L2 -177 3095 2148 24 0 0 0 chr6 136693669 136693693 -52585861 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 136693749 136693771 -52585783 + AT_rich Low_complexity Low_complexity 1 22 0 216 312 83 9 chr6 136693867 136693976 -52585578 - L3b LINE CR1 -74 1509 1393 2157 111 0 7 chr6 136695345 136695633 -52583921 - AluSx SINE Alu -14 298 13 679 218 60 56 chr6 136695914 136696130 -52583424 - L1MD2 LINE L1 -26 6333 6117 1380 143 17 4 chr6 136696179 136696417 -52583137 - L1MA4 LINE L1 -4 6296 6056 382 306 41 27 chr6 136697259 136697406 -52582148 + MIR SINE MIR 8 156 -106 26 0 0 0 chr6 136697428 136697454 -52582100 + AT_rich Low_complexity Low_complexity 1 26 0 1950 180 14 8 chr6 136697990 136698351 -52581203 + MLT1A1 LTR MaLR 1 363 -2 978 269 136 6 chr6 136700167 136700483 -52579071 - LTR18A LTR ERVL 0 357 1 13804 159 22 2 chr6 136700484 136702611 -52576943 - HERVL18 LTR ERVL 0 6047 3879 20667 154 13 5 chr6 136702716 136705899 -52573655 - HERVL18 LTR ERVL -2349 3698 492 180 0 0 0 chr6 136705964 136705984 -52573570 + (T)n Simple_repeat Simple_repeat 1 20 0 530 265 45 8 chr6 136706224 136706356 -52573198 - MER5B DNA MER1_type -16 162 26 1523 273 63 14 chr6 136706356 136706851 -52572703 - LTR40a LTR ERVL 0 519 1 761 270 22 15 chr6 136707128 136707402 -52572152 - L1M4 LINE L1 -2627 3519 3244 358 319 30 22 chr6 136708190 136708325 -52571229 + L2 LINE L2 3159 3294 -19 2179 135 43 3 chr6 136709151 136709500 -52570054 - Tigger7 DNA MER2_type -4 2583 2221 1531 209 20 0 chr6 136709497 136709789 -52569765 - Tigger7 DNA MER2_type -2189 298 1 * 297 283 138 73 chr6 136709891 136710245 -52569309 - MLT1J LTR MaLR -23 488 112 217 316 40 0 chr6 136710444 136710520 -52569034 + (CATG)n Simple_repeat Simple_repeat 2 80 0 265 284 0 0 chr6 136711226 136711300 -52568254 + MLT2C1 LTR ERVL 49 122 -275 * 1984 232 82 19 chr6 136711261 136711774 -52567780 + MLT1E2 LTR MaLR 80 624 -2 1497 235 9 25 chr6 136711776 136712273 -52567281 + MLT1E2-int LTR MaLR 1 603 -768 1334 304 87 33 chr6 136712458 136713103 -52566451 + MLT1E2-int LTR MaLR 692 1371 0 2144 227 81 25 chr6 136713103 136713694 -52565860 + MLT1E2 LTR MaLR 1 624 -2 273 220 150 40 chr6 136713981 136714081 -52565473 - L2 LINE L2 -4 3309 3199 190 327 59 65 chr6 136714737 136714890 -52564664 - MIR3 SINE MIR -46 162 11 351 0 0 0 chr6 136715406 136715445 -52564109 + (CA)n Simple_repeat Simple_repeat 1 39 0 3472 87 0 2 chr6 136716356 136716830 -52562724 - L1PA13 LINE L1 -8 6155 5683 728 349 27 9 chr6 136716941 136717271 -52562283 + MLT1I LTR MaLR 63 398 -11 276 319 64 32 chr6 136717297 136717454 -52562100 + L1ME LINE L1 4018 4179 -1967 371 224 145 22 chr6 136717611 136717790 -52561764 + L1ME LINE L1 4317 4517 -1629 209 229 0 14 chr6 136718061 136718131 -52561423 + GA-rich Low_complexity Low_complexity 3 71 0 229 269 0 0 chr6 136718313 136718365 -52561189 + GA-rich Low_complexity Low_complexity 2 53 0 12777 189 27 20 chr6 136718437 136720861 -52558693 - Tigger2 DNA MER2_type -29 2689 249 7318 36 1 1 chr6 136720887 136721777 -52557777 - L1PA4 LINE L1 -3 6152 5263 10495 27 2 0 chr6 136721777 136723020 -52556534 + L1PA4 LINE L1 4017 5262 -884 1284 164 0 26 chr6 136723020 136723289 -52556265 - Tigger2 DNA MER2_type -2456 262 1 1685 158 60 0 chr6 136723312 136723597 -52555957 + AluJo SINE Alu 1 302 -10 692 298 121 1 chr6 136723609 136723958 -52555596 + L1ME LINE L1 5317 5714 -456 261 143 0 43 chr6 136724383 136724453 -52555101 + (GAGAA)n Simple_repeat Simple_repeat 4 70 0 26 0 0 0 chr6 136725037 136725063 -52554491 + AT_rich Low_complexity Low_complexity 1 26 0 241 320 32 26 chr6 136725564 136725720 -52553834 - MER89 LTR ERV1 -29 530 374 23 54 0 0 chr6 136726332 136726369 -52553185 + AT_rich Low_complexity Low_complexity 1 37 0 325 306 133 56 chr6 136726738 136726934 -52552620 - MIR SINE MIR -32 230 20 368 313 17 95 chr6 136726970 136727149 -52552405 - MER5A DNA MER1_type -22 167 3 3860 134 15 21 chr6 136727302 136727974 -52551580 + L1PA16 LINE L1 5491 6158 -8 189 180 0 0 chr6 136728754 136728804 -52550750 + (TA)n Simple_repeat Simple_repeat 2 51 0 1037 124 0 6 chr6 136729559 136729720 -52549834 - L1PB4 LINE L1 -1 6155 5996 35 41 0 0 chr6 136730206 136730255 -52549299 + AT_rich Low_complexity Low_complexity 1 49 0 405 306 83 29 chr6 136730338 136730652 -52548902 + L1ME4a LINE L1 5268 5598 -523 478 263 169 70 chr6 136730657 136730836 -52548718 + L1ME4a LINE L1 5630 5790 -331 1397 227 3 0 chr6 136730836 136731141 -52548413 + AluJo SINE Alu 4 309 0 478 263 169 70 chr6 136731141 136731386 -52548168 + L1ME4a LINE L1 5790 6097 -24 23 33 0 0 chr6 136731975 136732005 -52547549 + AT_rich Low_complexity Low_complexity 1 30 0 246 237 0 0 chr6 136732414 136732473 -52547081 - L1MC4 LINE L1 -1339 6703 6645 1601 158 7 50 chr6 136733079 136733377 -52546177 + AluJo SINE Alu 6 290 -22 25 0 0 0 chr6 136733377 136733402 -52546152 + AT_rich Low_complexity Low_complexity 1 25 0 511 221 40 71 chr6 136734135 136734361 -52545193 + L1ME LINE L1 5463 5681 -489 29 28 0 0 chr6 136735118 136735154 -52544400 + AT_rich Low_complexity Low_complexity 1 36 0 756 304 105 99 chr6 136735658 136736119 -52543435 - L3 LINE CR1 -70 1507 1050 283 360 36 9 chr6 136736119 136736230 -52543324 - L2 LINE L2 -2 3270 3157 756 304 105 99 chr6 136736230 136736278 -52543276 - L3 LINE CR1 -527 1050 1004 2216 109 3 0 chr6 136736278 136736572 -52542982 - AluSx SINE Alu -13 299 5 756 304 105 99 chr6 136736572 136737252 -52542302 - L3 LINE CR1 -573 1004 199 445 245 170 14 chr6 136737568 136737715 -52541839 - MER5A DNA MER1_type -9 180 11 1630 208 60 65 chr6 136737835 136738339 -52541215 + MLT1D LTR MaLR 5 505 0 537 297 81 58 chr6 136739429 136739789 -52539765 - LTR67 LTR ERVL -3 554 187 2503 146 7 0 chr6 136740685 136741090 -52538464 + L1PA16 LINE L1 5743 6150 -16 21 0 0 0 chr6 136742388 136742409 -52537145 + AT_rich Low_complexity Low_complexity 1 21 0 352 275 22 4 chr6 136743830 136743922 -52535632 - MER5A DNA MER1_type -75 103 18 289 255 19 66 chr6 136744727 136744833 -52534721 - MER94 DNA DNA 0 134 34 246 145 29 14 chr6 136744966 136745035 -52534519 + G-rich Low_complexity Low_complexity 4 73 0 1990 108 14 0 chr6 136745286 136745595 -52533959 + AluSp SINE Alu 7 313 0 182 419 22 29 chr6 136745992 136746128 -52533426 - L2 LINE L2 -752 2562 2428 266 303 172 0 chr6 136747088 136747233 -52532321 - MIR3 SINE MIR -7 201 32 226 264 149 11 chr6 136748670 136748757 -52530797 - MIR SINE MIR -13 249 151 1994 123 0 4 chr6 136750299 136750575 -52528979 - AluSx SINE Alu -37 275 1 197 339 142 0 chr6 136750886 136751013 -52528541 + L2 LINE L2 3160 3304 -9 285 146 0 0 chr6 136751087 136751135 -52528419 + (GGGGA)n Simple_repeat Simple_repeat 5 52 0 220 274 20 0 chr6 136751235 136751286 -52528268 + polypurine Low_complexity Low_complexity 3 54 0 185 350 103 17 chr6 136751554 136751671 -52527883 - L2 LINE L2 -6 3266 3140 355 284 31 16 chr6 136751706 136751833 -52527721 + L1M4 LINE L1 5043 5171 -975 242 105 0 0 chr6 136751873 136751911 -52527643 + MLT2B2 LTR ERVL 1 38 -477 1382 167 50 46 chr6 136751911 136752192 -52527362 + MLT2B1 LTR ERVL 239 520 0 2389 215 27 54 chr6 136752215 136752685 -52526869 + L1MEc LINE L1 291 772 -5624 1799 167 3 3 chr6 136752685 136752996 -52526558 + AluJo SINE Alu 1 311 0 2389 215 27 54 chr6 136752996 136753049 -52526505 + L1MEc LINE L1 772 825 -5571 1395 173 128 89 chr6 136753049 136753541 -52526013 - LTR64 LTR ERVK 0 513 3 2389 215 27 54 chr6 136753541 136753682 -52525872 + L1MEc LINE L1 825 941 -5455 1474 255 61 28 chr6 136753683 136753778 -52525776 + L1MEc LINE L1 2120 2210 -4005 2000 85 4 0 chr6 136753778 136754050 -52525504 + L1PA7 LINE L1 5882 6154 0 1474 255 61 28 chr6 136754050 136754085 -52525469 + L1MEc LINE L1 2210 2242 -3973 1525 157 84 0 chr6 136754085 136754347 -52525207 + AluSg SINE Alu 17 300 -10 1474 255 61 28 chr6 136754347 136755019 -52524535 + L1MEc LINE L1 2242 2912 -3303 275 182 0 45 chr6 136755053 136755119 -52524435 - Alu SINE Alu 0 301 239 2343 55 3 26 chr6 136755227 136755534 -52524020 + AluY SINE Alu 1 300 -11 335 322 54 13 chr6 136755551 136755700 -52523854 - Charlie2 DNA MER1_type -2702 160 6 423 261 126 47 chr6 136755967 136756285 -52523269 + L1M4 LINE L1 2680 3022 -3124 1857 186 139 33 chr6 136756643 136756715 -52522839 + L1MCa LINE L1 1943 2006 -4420 243 0 0 0 chr6 136756715 136756742 -52522812 + (TG)n Simple_repeat Simple_repeat 2 28 0 1857 186 139 33 chr6 136756742 136757456 -52522098 + L1MCa LINE L1 2006 2794 -3632 1998 200 47 5 chr6 136757456 136757861 -52521693 + MSTA LTR MaLR 1 422 -6 347 83 0 0 chr6 136757867 136757915 -52521639 + MSTA-int LTR MaLR 1 48 -1603 * 2770 162 124 6 chr6 136757906 136758521 -52521033 + L1PA13 LINE L1 1698 2393 -4404 4102 176 97 13 chr6 136758521 136759358 -52520196 + MSTA-int LTR MaLR 745 1651 0 2188 170 38 14 chr6 136759358 136759776 -52519778 + MSTA LTR MaLR 1 428 0 303 247 12 0 chr6 136759776 136759861 -52519693 + L1MCa LINE L1 2792 2877 -3549 * 2430 228 98 4 chr6 136759833 136760588 -52518966 + L1MCa LINE L1 3424 4249 -2177 1709 135 7 50 chr6 136760593 136760874 -52518680 + AluSx SINE Alu 7 275 -37 1299 137 39 146 chr6 136760929 136761264 -52518290 - AluJb SINE Alu -8 304 6 320 274 151 0 chr6 136761318 136761504 -52518050 + HAL1 LINE L1 1088 1301 -1206 398 283 191 6 chr6 136761559 136761920 -52517634 + HAL1 LINE L1 1490 1980 -527 21 57 0 0 chr6 136762114 136762149 -52517405 + GC_rich Low_complexity Low_complexity 1 35 0 247 315 56 9 chr6 136762647 136762755 -52516799 + MIR3 SINE MIR 52 164 -44 217 191 24 0 chr6 136762952 136762994 -52516560 + L2 LINE L2 3214 3256 -16 226 269 0 0 chr6 136763787 136763839 -52515715 + L2 LINE L2 3219 3270 -2 409 330 17 56 chr6 136763879 136764021 -52515533 - MIR3 SINE MIR -13 195 60 1390 108 70 0 chr6 136764021 136764234 -52515320 - MER30 DNA MER1_type -1 229 2 409 330 17 56 chr6 136764234 136764270 -52515284 - MIR3 SINE MIR -148 60 24 2016 125 17 3 chr6 136764639 136764927 -52514627 - AluSx SINE Alu -18 294 3 1846 179 0 3 chr6 136765400 136765713 -52513841 + AluJb SINE Alu 1 312 0 420 260 82 34 chr6 136767067 136767213 -52512341 - L2 LINE L2 0 3313 3161 757 173 8 8 chr6 136767216 136767349 -52512205 + FLAM_A SINE Alu 1 133 0 946 252 89 13 chr6 136767439 136767741 -52511813 - LTR41 LTR ERVL -11 762 438 608 225 183 11 chr6 136767742 136767933 -52511621 + MER58A DNA MER1_type 1 224 0 292 378 0 27 chr6 136767933 136768035 -52511519 - LTR41 LTR ERVL -329 444 346 869 221 143 22 chr6 136768065 136768296 -52511258 - LTR41 LTR ERVL -514 259 1 260 256 225 48 chr6 136768319 136768546 -52511008 - L2 LINE L2 -243 3070 2804 * 511 304 93 37 chr6 136768535 136768805 -52510749 - L2 LINE L2 -644 2670 2386 310 241 139 9 chr6 136768893 136769001 -52510553 - MLT1I LTR MaLR -287 122 1 618 273 245 3 chr6 136769006 136769292 -52510262 - L2 LINE L2 -993 2321 1967 892 252 142 8 chr6 136769292 136769763 -52509791 - L1ME LINE L1 -454 5708 5191 1483 212 51 17 chr6 136769852 136770038 -52509516 - MLT1A2 LTR MaLR 0 374 196 234 0 0 0 chr6 136770038 136770064 -52509490 + (GA)n Simple_repeat Simple_repeat 2 27 0 1483 212 51 17 chr6 136770064 136770231 -52509323 - MLT1A2 LTR MaLR -178 196 9 477 277 185 22 chr6 136770231 136770686 -52508868 - L1ME LINE L1 -1311 4835 4307 312 324 145 31 chr6 136771261 136771619 -52507935 - L2 LINE L2 -1231 2083 1685 229 244 35 47 chr6 136772283 136772369 -52507185 - L1M4 LINE L1 -1531 4615 4531 23 0 0 0 chr6 136772408 136772431 -52507123 + AT_rich Low_complexity Low_complexity 1 23 0 4076 173 58 56 chr6 136772487 136773906 -52505648 - L1MB3 LINE L1 0 6183 4742 313 311 123 28 chr6 136773907 136774232 -52505322 - L1M4 LINE L1 -1785 4361 4006 23 33 0 0 chr6 136775380 136775410 -52504144 + AT_rich Low_complexity Low_complexity 1 30 0 1940 126 41 0 chr6 136776699 136776993 -52502561 - AluSx SINE Alu -6 306 1 601 296 48 29 chr6 136777373 136777579 -52501975 + MIR SINE MIR 32 241 -21 2059 116 0 11 chr6 136777809 136778086 -52501468 + AluSx SINE Alu 2 275 -37 238 338 14 0 chr6 136779279 136779353 -52500201 + MER5B DNA MER1_type 98 172 -6 357 248 9 28 chr6 136780242 136780351 -52499203 - HsTC2 DNA Tc2 -1018 880 774 455 260 113 51 chr6 136780360 136780537 -52499017 - MER5A DNA MER1_type 0 189 2 21 0 0 0 chr6 136780584 136780605 -52498949 + AT_rich Low_complexity Low_complexity 1 21 0 798 164 0 0 chr6 136780720 136780848 -52498706 - FLAM_C SINE Alu -5 128 1 304 216 49 49 chr6 136782646 136782748 -52496806 - L1ME2 LINE L1 -212 5952 5851 1932 174 0 0 chr6 136782777 136783088 -52496466 - AluJb SINE Alu -1 311 1 30 59 0 0 chr6 136783098 136783149 -52496405 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr6 136785623 136785651 -52493903 + AT_rich Low_complexity Low_complexity 1 28 0 339 256 79 55 chr6 136787471 136787635 -52491919 + MIR SINE MIR 32 199 -63 188 266 47 0 chr6 136789255 136789319 -52490235 + L2 LINE L2 3161 3227 -86 24 0 0 0 chr6 136789926 136789950 -52489604 + AT_rich Low_complexity Low_complexity 1 24 0 1015 232 19 5 chr6 136790998 136791209 -52488345 - MER58A DNA MER1_type -2 222 9 359 272 99 25 chr6 136791533 136791695 -52487859 - MER117 DNA MER1_type -9 188 15 5489 86 4 0 chr6 136791695 136792462 -52487092 - L1P LINE L1 -2104 4042 3273 21 0 0 0 chr6 136794706 136794727 -52484827 + AT_rich Low_complexity Low_complexity 1 21 0 679 192 61 15 chr6 136795874 136796072 -52483482 - Charlie2 DNA MER1_type -36 2826 2620 2214 103 3 0 chr6 136796091 136796382 -52483172 - AluSx SINE Alu -20 292 1 537 239 139 19 chr6 136796567 136796776 -52482778 + MLT1J2 LTR MaLR 1 234 -216 536 205 217 53 chr6 136797057 136797320 -52482234 - Charlie2 DNA MER1_type -700 2162 1857 * 601 258 83 76 chr6 136797318 136797437 -52482117 - Charlie2 DNA MER1_type -2461 321 204 2193 109 0 7 chr6 136797437 136797740 -52481814 - AluSx SINE Alu -11 301 1 601 258 83 76 chr6 136797740 136797767 -52481787 - Charlie2 DNA MER1_type -2578 204 179 2422 53 3 16 chr6 136797767 136798070 -52481484 + AluY SINE Alu 1 299 -12 601 258 83 76 chr6 136798070 136798236 -52481318 - Charlie2 DNA MER1_type -2603 179 6 423 261 126 47 chr6 136798502 136798820 -52480734 + L1M4 LINE L1 2680 3022 -3124 1177 208 104 60 chr6 136799178 136799252 -52480302 + L1MCa LINE L1 1943 2012 -4414 243 0 0 0 chr6 136799252 136799279 -52480275 + (TG)n Simple_repeat Simple_repeat 2 28 0 1177 208 104 60 chr6 136799279 136799993 -52479561 + L1MCa LINE L1 2012 2794 -3632 2017 198 47 5 chr6 136799993 136800398 -52479156 + MSTA LTR MaLR 1 422 -6 347 83 0 0 chr6 136800404 136800452 -52479102 + MSTA-int LTR MaLR 1 48 -1603 * 2770 162 124 6 chr6 136800443 136801058 -52478496 + L1PA13 LINE L1 1698 2393 -4404 4102 176 97 13 chr6 136801058 136801895 -52477659 + MSTA-int LTR MaLR 745 1651 0 2173 172 38 14 chr6 136801895 136802313 -52477241 + MSTA LTR MaLR 1 428 0 303 247 12 0 chr6 136802313 136802398 -52477156 + L1MCa LINE L1 2792 2877 -3549 * 6040 239 60 24 chr6 136802370 136803128 -52476426 + L1MCa LINE L1 3424 4153 -2273 2233 94 17 3 chr6 136803128 136803425 -52476129 + AluSx SINE Alu 3 303 -9 6040 239 60 24 chr6 136803425 136804568 -52474986 + L1MCa LINE L1 4153 5394 -1032 1529 175 108 0 chr6 136804587 136804912 -52474642 - L1MD2 LINE L1 -355 6004 5645 194 265 0 20 chr6 136805951 136806000 -52473554 + MIR3 SINE MIR 113 160 -48 1689 161 31 0 chr6 136806097 136806357 -52473197 - AluJb SINE Alu -38 274 7 1005 72 14 22 chr6 136807842 136807980 -52471574 + AluY SINE Alu 165 301 -10 22 56 0 0 chr6 136808019 136808055 -52471499 + AT_rich Low_complexity Low_complexity 1 36 0 2250 83 21 0 chr6 136809910 136810200 -52469354 + AluSc SINE Alu 1 296 -13 13896 130 30 27 chr6 136810834 136811811 -52467743 + Tigger1 DNA MER2_type 2 975 -1443 2088 130 10 0 chr6 136811811 136812118 -52467436 + AluSq SINE Alu 1 310 -3 13896 130 30 27 chr6 136812118 136813551 -52466003 + Tigger1 DNA MER2_type 975 2418 0 37 0 0 0 chr6 136813835 136813872 -52465682 + AT_rich Low_complexity Low_complexity 1 37 0 367 211 174 9 chr6 136814755 136814864 -52464690 - L2 LINE L2 -4 3309 3183 716 272 47 92 chr6 136814953 136815291 -52464263 + MER102b DNA MER1_type 8 330 -11 21 0 0 0 chr6 136816320 136816341 -52463213 + AT_rich Low_complexity Low_complexity 1 21 0 969 84 3 3 chr6 136816658 136816801 -52462753 + HERVL-A2 LTR ERVL 1915 2035 -3619 * 3135 75 54 7 chr6 136816791 136817232 -52462322 + HERVL-A2 LTR ERVL 5193 5654 0 267 85 128 0 chr6 136817234 136817281 -52462273 + MLT2A2 LTR ERVL 3 55 -398 3392 58 9 16 chr6 136817284 136817731 -52461823 + MLT2A1 LTR ERVL 1 444 0 287 323 159 55 chr6 136819113 136819532 -52460022 + L2 LINE L2 1825 2199 -1115 1392 200 58 12 chr6 136819532 136819877 -52459677 + MLT1A1 LTR MaLR 4 364 -1 198 103 0 0 chr6 136819877 136819906 -52459648 + (TA)n Simple_repeat Simple_repeat 1 29 0 287 323 159 55 chr6 136819906 136820071 -52459483 + L2 LINE L2 2198 2471 -843 22 35 0 0 chr6 136821794 136821823 -52457731 + AT_rich Low_complexity Low_complexity 1 29 0 440 219 174 19 chr6 136821993 136822148 -52457406 + L1ME1 LINE L1 45 223 -6173 1870 85 21 50 chr6 136822168 136822451 -52457103 - AluSx SINE Alu -37 275 1 1995 261 89 35 chr6 136822506 136823500 -52456054 + L1ME1 LINE L1 541 1610 -4786 2123 20 0 0 chr6 136823500 136823747 -52455807 + L1PA2 LINE L1 5908 6154 -1 1995 261 89 35 chr6 136823747 136823925 -52455629 + L1ME1 LINE L1 1610 1777 -4619 1705 251 45 16 chr6 136823960 136824522 -52455032 + L1ME1 LINE L1 3711 4288 -1927 621 244 89 0 chr6 136824525 136824705 -52454849 + AluJo SINE Alu 110 305 -7 2594 220 107 13 chr6 136824713 136826356 -52453198 + L1ME1 LINE L1 4312 6234 -1 1019 244 113 58 chr6 136826356 136826894 -52452660 + HAL1b LINE L1 158 725 -623 366 205 77 0 chr6 136826896 136826974 -52452580 - MER5A DNA MER1_type -3 186 103 1511 245 120 100 chr6 136827017 136828030 -52451524 + HAL1 LINE L1 3 1040 -1467 1784 125 7 49 chr6 136828030 136828317 -52451237 + AluSx SINE Alu 1 275 -37 1511 245 120 100 chr6 136828317 136828370 -52451184 + HAL1 LINE L1 1040 1090 -1417 1334 138 39 144 chr6 136828372 136828706 -52450848 - AluJb SINE Alu -8 304 6 303 283 136 0 chr6 136828760 136828937 -52450617 + HAL1 LINE L1 1088 1288 -1219 590 220 225 105 chr6 136829001 136829399 -52450155 + HAL1 LINE L1 1490 1839 -668 1993 141 7 7 chr6 136829399 136829697 -52449857 + AluSx SINE Alu 1 298 -14 590 220 225 105 chr6 136829697 136830079 -52449475 + HAL1 LINE L1 1839 2364 -143 302 243 196 45 chr6 136830166 136830323 -52449231 + HAL1b LINE L1 789 921 -427 1112 200 14 18 chr6 136830323 136830543 -52449011 - MER20 DNA MER1_type 0 219 1 302 243 196 45 chr6 136830543 136830722 -52448832 + HAL1b LINE L1 921 1176 -172 1193 110 23 0 chr6 136831444 136831617 -52447937 - AluSg/x SINE Alu -3 307 131 233 0 62 0 chr6 136831617 136831649 -52447905 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1971 113 11 11 chr6 136831650 136831933 -52447621 - AluSx SINE Alu -29 283 1 553 244 41 29 chr6 136832121 136832293 -52447261 + AluJo SINE Alu 116 289 -23 2114 80 4 4 chr6 136834925 136835199 -52444355 + AluSg SINE Alu 19 292 -18 2083 144 0 0 chr6 136835927 136836233 -52443321 + AluSq SINE Alu 1 306 -7 673 164 0 0 chr6 136837102 136837224 -52442330 - AluSg/x SINE Alu -4 308 187 349 120 0 0 chr6 136837233 136837283 -52442271 - AluSp/q SINE Alu -49 254 205 349 171 71 0 chr6 136837268 136837338 -52442216 - AluSg/x SINE Alu -115 187 113 21 0 0 0 chr6 136837342 136837363 -52442191 + AT_rich Low_complexity Low_complexity 1 21 0 640 221 16 0 chr6 136837451 136837578 -52441976 + AluJo/FLAM SINE Alu 2 130 -172 2314 109 0 0 chr6 136837580 136837884 -52441670 + AluSx SINE Alu 1 304 -8 962 190 99 4 chr6 136839041 136839304 -52440250 - MER33 DNA MER1_type 0 324 37 2972 101 10 0 chr6 136840871 136841276 -52438278 - L1P3 LINE L1 -6043 418 10 2437 77 0 0 chr6 136842119 136842418 -52437136 - AluY SINE Alu -12 299 1 2631 214 57 33 chr6 136843130 136843736 -52435818 + L1MC4 LINE L1 7286 7915 -127 195 100 0 0 chr6 136843736 136843766 -52435788 + (TG)n Simple_repeat Simple_repeat 2 31 0 2631 214 57 33 chr6 136843766 136843891 -52435663 + L1MC4 LINE L1 7915 8035 -7 2364 44 7 10 chr6 136844038 136844336 -52435218 - AluY SINE Alu -13 298 2 429 248 12 5 chr6 136844476 136844613 -52434941 - LTR43 LTR ERV1 -207 472 183 2265 99 0 3 chr6 136844621 136844925 -52434629 - AluSg SINE Alu -7 303 1 24 32 0 0 chr6 136845133 136845164 -52434390 + AT_rich Low_complexity Low_complexity 1 31 0 1589 184 103 73 chr6 136845513 136846045 -52433509 - MER34B LTR ERV1 -7 558 11 245 343 56 0 chr6 136846084 136846192 -52433362 + L2 LINE L2 3200 3313 0 207 139 0 0 chr6 136846238 136846274 -52433280 + (A)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr6 136846729 136846751 -52432803 + AT_rich Low_complexity Low_complexity 1 22 0 2772 131 14 0 chr6 136846850 136847278 -52432276 + MER57B LTR ERV1 1 434 0 196 324 134 21 chr6 136847309 136847451 -52432103 + L3b LINE CR1 1283 1440 -143 229 90 104 15 chr6 136848116 136848183 -52431371 + L1PA16 LINE L1 6091 6163 -3 21 36 0 0 chr6 136848781 136848809 -52430745 + AT_rich Low_complexity Low_complexity 1 28 0 1774 236 44 33 chr6 136848906 136849452 -52430102 - L1MC4 LINE L1 -8 8034 7483 1189 202 34 74 chr6 136849454 136849899 -52429655 + MLT1A1 LTR MaLR 1 428 0 1464 219 51 86 chr6 136849899 136850529 -52429025 - L1MC4 LINE L1 -557 7485 6878 1123 176 10 24 chr6 136850529 136850734 -52428820 - AluJb SINE Alu -34 278 77 1376 236 66 3 chr6 136850752 136851100 -52428454 - L1MC4 LINE L1 -1208 6834 6465 1887 137 7 0 chr6 136851299 136851611 -52427943 - AluSq SINE Alu 0 327 14 858 217 17 67 chr6 136852346 136852475 -52427079 - LTR16A LTR ERVL 0 450 337 2185 173 42 10 chr6 136852475 136852885 -52426669 + MSTB LTR MaLR 4 426 0 858 217 17 67 chr6 136852885 136852995 -52426559 - LTR16A LTR ERVL -113 337 223 2514 133 94 8 chr6 136853018 136853610 -52425944 - MER50 LTR ERV1 -23 711 3 379 331 135 0 chr6 136853612 136853775 -52425779 - LTR16A LTR ERVL -259 191 7 402 346 92 25 chr6 136854793 136855108 -52424446 - L1 LINE L1 -3135 3011 2676 1757 171 112 6 chr6 136855223 136855544 -52424010 + MLT1A1 LTR MaLR 1 355 -10 207 360 12 12 chr6 136856354 136856440 -52423114 + MIR3 SINE MIR 78 163 -45 10689 242 64 30 chr6 136856693 136860189 -52419365 + L1M2 LINE L1 9 3673 -3175 2027 163 34 14 chr6 136860189 136860546 -52419008 - THE1B LTR MaLR 0 364 1 10689 242 64 30 chr6 136860546 136862239 -52417315 + L1M2 LINE L1 3673 5307 -1541 1922 169 128 13 chr6 136862775 136863159 -52416395 - MSTA LTR MaLR 0 428 1 1831 121 3 17 chr6 136863159 136863449 -52416105 - MSTA-int LTR MaLR 0 1580 1295 * 2773 181 52 10 chr6 136863433 136864011 -52415543 - MSTA-int LTR MaLR -618 962 391 1269 119 0 11 chr6 136864014 136864199 -52415355 - AluSp SINE Alu 0 313 131 1209 119 16 10 chr6 136864209 136864403 -52415151 - MSTA-int LTR MaLR -1456 195 1 1821 180 125 10 chr6 136864403 136864787 -52414767 - MSTA LTR MaLR 0 428 1 1757 226 19 3 chr6 136864958 136865326 -52414228 - MLT1A2 LTR MaLR 0 374 1 271 121 55 143 chr6 136865508 136865599 -52413955 - MLT1K LTR MaLR -36 552 470 23 0 0 0 chr6 136866734 136866757 -52412797 + AT_rich Low_complexity Low_complexity 1 23 0 3740 107 14 20 chr6 136866921 136867472 -52412082 - LTR14 LTR ERVK 0 548 1 21066 167 55 55 chr6 136867475 136868771 -52410783 - HERVKC4 LTR ERVK -7 5255 3960 2695 23 0 7 chr6 136868771 136869077 -52410477 - AluY SINE Alu -7 304 1 21066 167 55 55 chr6 136869077 136870832 -52408722 - HERVKC4 LTR ERVK -1302 3960 2206 2454 58 3 0 chr6 136870832 136871125 -52408429 - AluY SINE Alu -17 294 1 21066 167 55 55 chr6 136871125 136871512 -52408042 - HERVKC4 LTR ERVK -3056 2206 1820 2326 92 0 3 chr6 136871512 136871807 -52407747 - AluY SINE Alu -17 294 1 21066 167 55 55 chr6 136871807 136873623 -52405931 - HERVKC4 LTR ERVK -3442 1820 1 3597 110 7 24 chr6 136873632 136874170 -52405384 - LTR14 LTR ERVK -19 529 1 526 294 79 61 chr6 136874448 136874877 -52404677 + Charlie8 DNA MER1_type 1 434 -1983 323 279 12 138 chr6 136874921 136875168 -52404386 + L2 LINE L2 2174 2389 -925 487 280 44 67 chr6 136875223 136875500 -52404054 + MLT1I LTR MaLR 39 276 -133 24 60 0 30 chr6 136875511 136875544 -52404010 + AT_rich Low_complexity Low_complexity 1 33 -32 2160 156 7 32 chr6 136875544 136875947 -52403607 - L1PA16 LINE L1 -9 6157 5765 24 60 0 30 chr6 136875947 136875980 -52403574 + AT_rich Low_complexity Low_complexity 33 65 0 798 284 59 35 chr6 136876266 136876689 -52402865 + L1MEd LINE L1 423 855 -5264 189 0 0 0 chr6 136876764 136876785 -52402769 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 26 30 0 0 chr6 136877440 136877473 -52402081 + AT_rich Low_complexity Low_complexity 1 33 0 2126 112 3 0 chr6 136877794 136878089 -52401465 - AluSc SINE Alu -13 296 1 547 281 71 5 chr6 136879191 136879387 -52400167 - L1ME3A LINE L1 0 6170 5962 1246 217 43 43 chr6 136879548 136879651 -52399903 - MER58B DNA MER1_type -2090 330 228 3215 113 42 2 chr6 136879651 136880145 -52399409 + MER75 DNA T2_type 1 514 0 1246 217 43 43 chr6 136880145 136880368 -52399186 - MER58B DNA MER1_type -2191 229 4 231 266 101 30 chr6 136880545 136880744 -52398810 - L2 LINE L2 -220 3093 2881 2983 100 102 22 chr6 136881142 136881604 -52397950 + MER1A DNA MER1_type 31 529 0 245 252 112 112 chr6 136882183 136882397 -52397157 + L2 LINE L2 3090 3303 -10 8864 107 11 27 chr6 136882764 136883475 -52396079 - HSMAR1 DNA Mariner 0 1287 604 2326 87 0 0 chr6 136883475 136883764 -52395790 + AluY SINE Alu 1 289 -22 8864 107 11 27 chr6 136883764 136884351 -52395203 - HSMAR1 DNA Mariner -683 604 9 3711 93 25 69 chr6 136884351 136884944 -52394610 - L1P3 LINE L1 -5887 574 8 2096 172 29 90 chr6 136884955 136885432 -52394122 - L1 LINE L1 -1909 4061 3625 2377 128 3 29 chr6 136885432 136885615 -52393939 + THE1B LTR MaLR 1 170 -194 1795 135 4 0 chr6 136885615 136885874 -52393680 + AluSq SINE Alu 39 298 -15 2377 128 3 29 chr6 136885874 136886064 -52393490 + THE1B LTR MaLR 170 364 0 2096 172 29 90 chr6 136886064 136886174 -52393380 - L1 LINE L1 -2345 3625 3510 834 159 0 16 chr6 136886197 136886379 -52393175 + CT-rich Low_complexity Low_complexity 2 180 0 384 161 11 21 chr6 136886392 136886485 -52393069 + CT-rich Low_complexity Low_complexity 2 93 0 3525 216 47 25 chr6 136886521 136887569 -52391985 - L1 LINE L1 -2447 3523 2453 9695 159 25 22 chr6 136887576 136889979 -52389575 - Tigger1 DNA MER2_type 0 2418 1 3040 255 48 45 chr6 136889979 136890445 -52389109 - L1 LINE L1 -3526 2444 1981 1495 215 41 22 chr6 136890445 136890686 -52388868 - MLT1A2 LTR MaLR 0 374 122 1561 187 60 23 chr6 136890686 136890986 -52388568 + AluJo SINE Alu 1 311 -1 1495 215 41 22 chr6 136890986 136891111 -52388443 - MLT1A2 LTR MaLR -252 122 1 3040 255 48 45 chr6 136891111 136892707 -52386847 - L1 LINE L1 -3989 1981 365 302 298 82 91 chr6 136892791 136893144 -52386410 - L1 LINE L1 -5533 358 9 422 323 76 62 chr6 136893674 136893962 -52385592 + L2 LINE L2 2978 3269 -3 346 232 87 153 chr6 136893971 136894212 -52385342 + MIR SINE MIR 37 261 -1 2505 181 101 9 chr6 136894440 136895223 -52384331 - L1MB3 LINE L1 -3 6180 5161 1355 178 34 4 chr6 136895223 136895500 -52384054 - AluJo SINE Alu 0 323 40 43 35 0 0 chr6 136896210 136896267 -52383287 + AT_rich Low_complexity Low_complexity 1 57 0 336 336 21 7 chr6 136896267 136896410 -52383144 + L1MEc LINE L1 186 330 -6066 286 381 5 14 chr6 136896485 136896703 -52382851 + L1MEc LINE L1 498 713 -5683 29 0 0 0 chr6 136896730 136896759 -52382795 + AT_rich Low_complexity Low_complexity 1 29 0 541 226 0 0 chr6 136896759 136896865 -52382689 - FLAM_A SINE Alu -36 106 1 534 335 75 10 chr6 136897745 136897945 -52381609 + MIR SINE MIR 17 229 -33 1857 148 10 33 chr6 136898012 136898315 -52381239 - AluSx SINE Alu -16 296 1 208 196 9 65 chr6 136898807 136898914 -52380640 + A-rich Low_complexity Low_complexity 6 106 0 285 299 29 63 chr6 136898953 136899127 -52380427 + MLT1J LTR MaLR 19 186 -325 180 0 0 0 chr6 136899232 136899252 -52380302 + (TTTTA)n Simple_repeat Simple_repeat 5 24 0 44192 36 3 8 chr6 136899253 136905429 -52374125 - L1PA4 LINE L1 -10 6145 1 2105 130 0 46 chr6 136905432 136905756 -52373798 - AluSq SINE Alu -4 309 1 21 36 0 0 chr6 136906018 136906046 -52373508 + AT_rich Low_complexity Low_complexity 1 28 0 35 24 0 0 chr6 136906430 136906472 -52373082 + AT_rich Low_complexity Low_complexity 1 42 0 4623 130 11 10 chr6 136906732 136907544 -52372010 + L1PA15 LINE L1 5161 5967 -198 1244 134 0 5 chr6 136907533 136907719 -52371835 - L1PA15 LINE L1 -25 6140 5956 * 1169 107 0 6 chr6 136907719 136907884 -52371670 + L1PA15 LINE L1 5996 6162 -3 21 0 0 0 chr6 136908769 136908790 -52370764 + AT_rich Low_complexity Low_complexity 1 21 0 1233 111 136 66 chr6 136909267 136909404 -52370150 - LTR18B LTR ERVL 0 614 488 2466 74 0 7 chr6 136909404 136909714 -52369840 - AluSq SINE Alu -5 308 1 1233 111 136 66 chr6 136909714 136909819 -52369735 - LTR18B LTR ERVL -126 488 355 1024 142 5 88 chr6 136909835 136910040 -52369514 - LTR18B LTR ERVL -426 188 1 202 328 0 84 chr6 136911357 136911476 -52368078 - L3b LINE CR1 -138 1445 1337 183 413 46 0 chr6 136911557 136911666 -52367888 + L2 LINE L2 3156 3269 -3 410 262 55 16 chr6 136911722 136911905 -52367649 - HAL1 LINE L1 -1 2506 2317 360 209 0 0 chr6 136911908 136911999 -52367555 + (TA)n Simple_repeat Simple_repeat 2 92 0 2172 115 0 0 chr6 136912003 136912289 -52367265 - AluSx SINE Alu -24 288 3 2661 265 91 18 chr6 136912396 136913708 -52365846 - HAL1 LINE L1 -295 2212 806 562 242 109 109 chr6 136913721 136914117 -52365437 - HAL1 LINE L1 -1889 618 223 1700 214 107 101 chr6 136914117 136914433 -52365121 + LTR41 LTR ERVL 21 334 -439 1882 132 0 28 chr6 136914433 136914754 -52364800 - AluSx SINE Alu 0 313 1 1700 214 107 101 chr6 136914754 136915148 -52364406 + LTR41 LTR ERVL 334 736 -37 591 51 0 13 chr6 136915347 136915425 -52364129 - MADE1 DNA Mariner 0 80 4 204 40 0 0 chr6 136915555 136915580 -52363974 + (T)n Simple_repeat Simple_repeat 1 25 0 301 280 40 60 chr6 136916587 136916737 -52362817 - MIR SINE MIR -69 193 47 285 393 48 22 chr6 136917208 136917437 -52362117 - L2 LINE L2 -177 3095 2861 2930 271 24 30 chr6 136917967 136918066 -52361488 + ERVL LTR ERVL 2856 2954 -2810 2441 107 16 16 chr6 136918066 136918441 -52361113 + THE1C LTR MaLR 1 375 0 2930 271 24 30 chr6 136918441 136919008 -52360546 + ERVL LTR ERVL 2954 3518 -2246 1939 136 20 7 chr6 136919008 136919302 -52360252 + AluSq SINE Alu 1 298 -15 2930 271 24 30 chr6 136919302 136919474 -52360080 + ERVL LTR ERVL 3518 3690 -2074 1125 270 49 7 chr6 136919489 136920030 -52359524 + MLT2E LTR ERVL 1 616 -12 956 277 77 35 chr6 136920125 136920501 -52359053 - MLT1K LTR MaLR -2 586 195 26 0 0 0 chr6 136920793 136920819 -52358735 + AT_rich Low_complexity Low_complexity 1 26 0 2345 131 3 0 chr6 136920839 136921199 -52358355 - L1PB1 LINE L1 -8 6143 5783 900 74 15 2 chr6 136921199 136921352 -52358202 + L1 LINE L1 5243 5394 -762 27 0 0 0 chr6 136921352 136921379 -52358175 + AT_rich Low_complexity Low_complexity 1 27 0 11383 176 54 8 chr6 136921383 136925002 -52354552 - L1PBa LINE L1 -1253 5609 1817 568 138 55 9 chr6 136925002 136925111 -52354443 - MLT1K LTR MaLR -276 114 1 312 70 0 0 chr6 136925661 136925704 -52353850 + (CA)n Simple_repeat Simple_repeat 2 44 0 359 340 11 11 chr6 136926382 136926567 -52352987 + L1MC4a LINE L1 5722 5906 -1902 2599 150 21 6 chr6 136926568 136927041 -52352513 + L1MB2 LINE L1 5689 6168 -3 27 0 0 0 chr6 136927597 136927624 -52351930 + AT_rich Low_complexity Low_complexity 1 27 0 617 295 92 24 chr6 136927809 136928016 -52351538 + Zaphod DNA AcHobo 1 221 -3810 334 174 75 65 chr6 136928080 136928373 -52351181 + Zaphod DNA AcHobo 694 989 -3042 660 200 126 5 chr6 136928373 136928563 -52350991 + Zaphod DNA AcHobo 3604 3816 -215 996 143 20 0 chr6 136928620 136928793 -52350761 - FRAM SINE Alu 0 175 1 840 195 11 6 chr6 136928794 136928968 -52350586 + Zaphod DNA AcHobo 3841 4015 -16 2031 122 10 3 chr6 136929447 136929741 -52349813 - AluY SINE Alu -15 296 1 580 237 0 0 chr6 136930669 136930783 -52348771 + MER81 DNA DNA 1 114 0 386 268 0 31 chr6 136931306 136931403 -52348151 - L2 LINE L2 -2 3311 3218 512 366 60 33 chr6 136931571 136932156 -52347398 - L2 LINE L2 0 3272 2653 322 272 18 70 chr6 136932154 136932268 -52347286 - MIR SINE MIR -68 194 87 * 1876 141 20 26 chr6 136932978 136933284 -52346270 + AluSx SINE Alu 1 304 -8 701 254 68 0 chr6 136933364 136933541 -52346013 + MER5A DNA MER1_type 1 189 0 218 281 134 12 chr6 136933575 136933657 -52345897 + MIR SINE MIR 45 136 -72 290 163 0 0 chr6 136933747 136933790 -52345764 + MER5A DNA MER1_type 146 188 -1 633 241 48 0 chr6 136933831 136933976 -52345578 - MER45A DNA AcHobo 0 178 27 607 227 154 14 chr6 136934399 136934619 -52344935 + MIR SINE MIR 6 256 -6 22 99 0 0 chr6 136936266 136936337 -52343217 + GC_rich Low_complexity Low_complexity 1 71 0 247 315 56 9 chr6 136936835 136936943 -52342611 + MIR3 SINE MIR 52 164 -44 217 191 24 0 chr6 136937140 136937182 -52342372 + L2 LINE L2 3214 3256 -16 226 269 0 0 chr6 136937975 136938027 -52341527 + L2 LINE L2 3219 3270 -2 409 330 17 56 chr6 136938067 136938209 -52341345 - MIR3 SINE MIR -13 195 60 1390 108 70 0 chr6 136938209 136938422 -52341132 - MER30 DNA MER1_type -1 229 2 409 330 17 56 chr6 136938422 136938458 -52341096 - MIR3 SINE MIR -148 60 24 2016 125 17 3 chr6 136938827 136939115 -52340439 - AluSx SINE Alu -18 294 3 6864 68 15 40 chr6 136989154 136990092 -52289462 - L1P LINE L1 -5232 914 1 2127 127 0 46 chr6 136990095 136990419 -52289135 - AluSq SINE Alu -4 309 1 21 36 0 0 chr6 136990681 136990709 -52288845 + AT_rich Low_complexity Low_complexity 1 28 0 36 23 0 0 chr6 136991093 136991136 -52288418 + AT_rich Low_complexity Low_complexity 1 43 0 2503 164 39 8 chr6 136991396 136992005 -52287549 + L1P4 LINE L1 5161 5782 -383 34511 34 7 1 chr6 136992120 136996428 -52283126 + L1P LINE L1 1044 5378 -768 8514 104 11 28 chr6 136996557 136997208 -52282346 - HSMAR1 DNA Mariner -61 1226 603 2326 87 0 0 chr6 136997208 136997497 -52282057 + AluY SINE Alu 1 289 -22 8514 104 11 28 chr6 136997497 136998083 -52281471 - HSMAR1 DNA Mariner -684 603 9 3606 93 29 71 chr6 136998083 136998675 -52280879 - L1P3 LINE L1 -5887 574 8 2070 174 29 90 chr6 136998686 136999163 -52280391 - L1M4c LINE L1 -1909 4061 3625 2377 128 3 29 chr6 136999163 136999346 -52280208 + THE1B LTR MaLR 1 170 -194 1795 135 4 0 chr6 136999346 136999605 -52279949 + AluSq SINE Alu 39 298 -15 2377 128 3 29 chr6 136999605 136999795 -52279759 + THE1B LTR MaLR 170 364 0 2070 174 29 90 chr6 136999795 136999905 -52279649 - L1M4c LINE L1 -2345 3625 3510 834 159 0 16 chr6 136999928 137000110 -52279444 + CT-rich Low_complexity Low_complexity 2 180 0 373 114 14 14 chr6 137000123 137000193 -52279361 + (TCC)n Simple_repeat Simple_repeat 3 72 0 221 158 0 0 chr6 137000199 137000237 -52279317 + CT-rich Low_complexity Low_complexity 1 38 0 4704 232 40 32 chr6 137000251 137001307 -52278247 - L1M4c LINE L1 -2446 3524 2451 12819 164 25 19 chr6 137001307 137003710 -52275844 - Tigger1 DNA MER2_type 0 2418 1 4704 232 40 32 chr6 137003710 137004173 -52275381 - L1M4c LINE L1 -3519 2451 1993 847 211 10 34 chr6 137004176 137004385 -52275169 - MLT1A1 LTR MaLR 0 365 162 864 231 62 33 chr6 137004487 137004603 -52274951 - MLT1A2 LTR MaLR -125 249 138 1515 193 57 23 chr6 137004603 137004904 -52274650 + AluJo SINE Alu 1 311 -1 864 231 62 33 chr6 137004904 137005029 -52274525 - MLT1A2 LTR MaLR -236 138 1 734 271 81 26 chr6 137005029 137005412 -52274142 - L1M4c LINE L1 -3978 1994 1591 3040 234 43 40 chr6 137005445 137006612 -52272942 - L1M4c LINE L1 -4519 1382 365 302 298 82 91 chr6 137006696 137007049 -52272505 - L1M4c LINE L1 -5533 358 9 422 323 76 62 chr6 137007579 137007867 -52271687 + L2 LINE L2 2978 3269 -3 346 232 87 153 chr6 137007876 137008117 -52271437 + MIR SINE MIR 37 261 -1 2518 180 101 9 chr6 137008345 137009125 -52270429 - L1MB3 LINE L1 -3 6180 5164 1355 178 34 4 chr6 137009126 137009405 -52270149 - AluJo SINE Alu 0 325 40 43 35 0 0 chr6 137010115 137010172 -52269382 + AT_rich Low_complexity Low_complexity 1 57 0 262 342 17 17 chr6 137010172 137010292 -52269262 + L1MEc LINE L1 186 305 -6091 286 381 5 14 chr6 137010390 137010608 -52268946 + L1MEc LINE L1 498 713 -5683 29 0 0 0 chr6 137010635 137010664 -52268890 + AT_rich Low_complexity Low_complexity 1 29 0 541 226 0 0 chr6 137010664 137010770 -52268784 - FLAM_A SINE Alu -36 106 1 198 0 0 0 chr6 137011063 137011085 -52268469 + (TC)n Simple_repeat Simple_repeat 2 23 0 534 335 75 10 chr6 137011649 137011849 -52267705 + MIR SINE MIR 17 229 -33 1857 148 10 33 chr6 137011916 137012219 -52267335 - AluSx SINE Alu -16 296 1 208 196 9 65 chr6 137012711 137012818 -52266736 + A-rich Low_complexity Low_complexity 6 106 0 285 299 29 63 chr6 137012857 137013031 -52266523 + MLT1J LTR MaLR 19 186 -325 180 0 0 0 chr6 137013136 137013156 -52266398 + (TTTTA)n Simple_repeat Simple_repeat 5 24 0 3081 30 8 35 chr6 137013157 137013557 -52265997 - L1PA4 LINE L1 -10 6145 5757 261 89 0 0 chr6 137013662 137013707 -52265847 + Alu SINE Alu 264 308 0 180 0 0 0 chr6 137013729 137013749 -52265805 + (T)n Simple_repeat Simple_repeat 1 20 0 205 260 60 0 chr6 137014015 137014065 -52265489 - L2 LINE L2 -4 3268 3216 2583 64 0 0 chr6 137014647 137014958 -52264596 + AluY SINE Alu 1 311 0 2628 103 5 11 chr6 137015741 137016118 -52263436 + THE1C LTR MaLR 1 375 0 25 75 0 0 chr6 137016603 137016656 -52262898 + AT_rich Low_complexity Low_complexity 1 53 0 484 244 16 24 chr6 137019781 137019904 -52259650 + L2 LINE L2 3190 3311 -2 22 0 0 0 chr6 137021779 137021801 -52257753 + AT_rich Low_complexity Low_complexity 1 22 0 2752 186 6 4 chr6 137021821 137022305 -52257249 + MER66B LTR ERV1 1 485 -1 282 404 7 14 chr6 137022623 137022764 -52256790 - MIR3 SINE MIR -65 143 4 198 356 17 0 chr6 137023017 137023076 -52256478 + L2 LINE L2 3228 3287 -26 7489 31 32 0 chr6 137024013 137025351 -52254203 - L1PA4 LINE L1 -3 6152 4796 1964 30 0 0 chr6 137025351 137025585 -52253969 + L1PA4 LINE L1 4580 4813 -1333 218 319 148 44 chr6 137025791 137025926 -52253628 - MIR3 SINE MIR -38 170 22 428 303 21 18 chr6 137026077 137026297 -52253257 + L1M1 LINE L1 5621 5847 -297 21 57 0 0 chr6 137026517 137026552 -52253002 + AT_rich Low_complexity Low_complexity 1 35 0 614 274 59 29 chr6 137027281 137027485 -52252069 + MIR SINE MIR 5 214 -48 202 311 27 14 chr6 137028043 137028117 -52251437 - L3b LINE CR1 -85 1498 1424 275 49 24 0 chr6 137028180 137028221 -52251333 + (CA)n Simple_repeat Simple_repeat 2 43 0 916 190 5 46 chr6 137028690 137028885 -52250669 - AluJb SINE Alu -6 306 120 28 86 0 0 chr6 137029119 137029189 -52250365 + AT_rich Low_complexity Low_complexity 1 70 0 448 294 175 0 chr6 137029768 137029911 -52249643 - MER5A DNA MER1_type 0 189 22 1131 86 7 0 chr6 137030802 137030954 -52248600 - MLT2A1 LTR ERVL -291 153 1 905 69 0 0 chr6 137030954 137031070 -52248484 - HERVL-A1 LTR ERVL 0 5654 5539 21 0 0 0 chr6 137032030 137032051 -52247503 + AT_rich Low_complexity Low_complexity 1 21 0 1233 111 136 66 chr6 137032528 137032665 -52246889 - LTR18B LTR ERVL 0 614 488 2466 74 0 7 chr6 137032665 137032975 -52246579 - AluSq SINE Alu -5 308 1 1233 111 136 66 chr6 137032975 137033080 -52246474 - LTR18B LTR ERVL -126 488 355 1054 142 5 83 chr6 137033096 137033300 -52246254 - LTR18B LTR ERVL -426 188 1 202 328 0 84 chr6 137034617 137034736 -52244818 - L3b LINE CR1 -138 1445 1337 183 413 46 0 chr6 137034817 137034926 -52244628 + L2 LINE L2 3156 3269 -3 410 262 55 16 chr6 137034982 137035165 -52244389 - HAL1 LINE L1 -1 2506 2317 360 209 0 0 chr6 137035168 137035259 -52244295 + (TA)n Simple_repeat Simple_repeat 1 91 0 2172 115 0 0 chr6 137035263 137035549 -52244005 - AluSx SINE Alu -24 288 3 2661 265 91 18 chr6 137035656 137036968 -52242586 - HAL1 LINE L1 -295 2212 806 596 241 109 106 chr6 137036981 137037376 -52242178 - HAL1 LINE L1 -1889 618 223 1684 215 107 101 chr6 137037376 137037692 -52241862 + LTR41 LTR ERVL 21 334 -439 1882 132 0 28 chr6 137037692 137038013 -52241541 - AluSx SINE Alu 0 313 1 1684 215 107 101 chr6 137038013 137038407 -52241147 + LTR41 LTR ERVL 334 736 -37 591 51 0 13 chr6 137038606 137038684 -52240870 - MADE1 DNA Mariner 0 80 4 339 25 0 0 chr6 137038814 137038854 -52240700 + (T)n Simple_repeat Simple_repeat 1 40 0 312 273 40 60 chr6 137039861 137040011 -52239543 - MIR SINE MIR -69 193 47 285 393 48 22 chr6 137040482 137040711 -52238843 - L2 LINE L2 -177 3095 2861 2650 271 24 30 chr6 137041241 137041340 -52238214 + ERVL LTR ERVL 2856 2954 -2810 2293 115 21 16 chr6 137041340 137041713 -52237841 + THE1C LTR MaLR 1 375 0 2650 271 24 30 chr6 137041713 137042280 -52237274 + ERVL LTR ERVL 2954 3518 -2246 1961 136 20 7 chr6 137042280 137042574 -52236980 + AluSq SINE Alu 1 298 -15 2650 271 24 30 chr6 137042574 137042746 -52236808 + ERVL LTR ERVL 3518 3690 -2074 999 268 49 7 chr6 137042761 137043302 -52236252 + MLT2E LTR ERVL 1 616 -12 835 295 67 24 chr6 137043397 137043773 -52235781 - MLT1K LTR MaLR -2 586 195 26 0 0 0 chr6 137044065 137044091 -52235463 + AT_rich Low_complexity Low_complexity 1 26 0 2334 131 3 0 chr6 137044111 137044471 -52235083 - L1PB1 LINE L1 -8 6143 5783 862 74 15 2 chr6 137044471 137044624 -52234930 + L1 LINE L1 5243 5394 -762 27 0 0 0 chr6 137044624 137044651 -52234903 + AT_rich Low_complexity Low_complexity 1 27 0 10655 211 57 9 chr6 137044655 137049706 -52229848 - L1PBa LINE L1 -1253 5609 6 206 143 89 0 chr6 137049868 137049924 -52229630 + A-rich Low_complexity Low_complexity 1 61 0 1002 273 99 32 chr6 137051100 137051532 -52228022 - MLT1K LTR MaLR -2 586 126 289 322 135 51 chr6 137051612 137051794 -52227760 + MIR3 SINE MIR 20 217 -31 31 68 0 0 chr6 137051860 137051919 -52227635 + AT_rich Low_complexity Low_complexity 1 59 0 429 95 0 0 chr6 137051958 137052021 -52227533 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 24 53 0 0 chr6 137052144 137052182 -52227372 + AT_rich Low_complexity Low_complexity 1 38 0 514 144 10 41 chr6 137052237 137052334 -52227220 - FRAM SINE Alu -17 159 66 1087 310 120 9 chr6 137052431 137052873 -52226681 + LTR16C LTR ERVL 1 491 0 21 36 0 0 chr6 137053344 137053372 -52226182 + AT_rich Low_complexity Low_complexity 1 28 0 326 266 13 0 chr6 137053423 137053502 -52226052 + L1ME4a LINE L1 6041 6120 -1 1121 211 43 10 chr6 137053591 137053894 -52225660 + L1PA15-16 LINE L1 49 361 -6502 396 345 92 29 chr6 137054545 137054861 -52224693 - L1 LINE L1 -3135 3011 2676 1640 171 112 6 chr6 137054976 137055297 -52224257 + MLT1A1 LTR MaLR 1 355 -10 210 360 12 12 chr6 137056106 137056192 -52223362 + MIR3 SINE MIR 78 163 -45 564 310 72 23 chr6 137056445 137056790 -52222764 + L1M2 LINE L1 9 370 -6479 267 301 21 0 chr6 137057109 137057202 -52222352 + L1M2 LINE L1 737 831 -6018 281 297 98 75 chr6 137057272 137057538 -52222016 + L1M2 LINE L1 796 1067 -5782 9810 227 55 7 chr6 137057783 137059939 -52219615 + L1PA15-16 LINE L1 1281 3712 -3150 2030 163 34 14 chr6 137059939 137060296 -52219258 - THE1B LTR MaLR 0 364 1 9810 227 55 7 chr6 137060296 137061988 -52217566 + L1PA15-16 LINE L1 3712 5321 -1541 1923 169 128 13 chr6 137062524 137062908 -52216646 - MSTA LTR MaLR 0 428 1 1661 118 7 14 chr6 137062908 137063187 -52216367 - MSTA-int LTR MaLR 0 1580 1304 * 2576 180 54 10 chr6 137063181 137063758 -52215796 - MSTA-int LTR MaLR -618 962 391 1293 119 0 11 chr6 137063761 137063946 -52215608 - AluSp SINE Alu 0 313 131 1143 119 16 10 chr6 137063956 137064150 -52215404 - MSTA-int LTR MaLR -1456 195 1 1808 182 125 10 chr6 137064150 137064534 -52215020 - MSTA LTR MaLR 0 428 1 1743 226 19 3 chr6 137064705 137065073 -52214481 - MLT1A2 LTR MaLR 0 374 1 239 151 41 82 chr6 137065255 137065328 -52214226 - MLT1K LTR MaLR -36 552 483 23 0 0 0 chr6 137066481 137066504 -52213050 + AT_rich Low_complexity Low_complexity 1 23 0 3745 107 14 20 chr6 137066668 137067219 -52212335 - LTR14 LTR ERVK 0 548 1 19573 168 55 55 chr6 137067222 137068518 -52211036 - HERVKC4 LTR ERVK -7 5255 3960 2691 23 0 7 chr6 137068518 137068824 -52210730 - AluY SINE Alu -7 304 1 19573 168 55 55 chr6 137068824 137070579 -52208975 - HERVKC4 LTR ERVK -1302 3960 2206 2454 58 3 0 chr6 137070579 137070872 -52208682 - AluY SINE Alu -17 294 1 19573 168 55 55 chr6 137070872 137071259 -52208295 - HERVKC4 LTR ERVK -3056 2206 1820 2330 92 0 3 chr6 137071259 137071554 -52208000 - AluY SINE Alu -17 294 1 19573 168 55 55 chr6 137071554 137073370 -52206184 - HERVKC4 LTR ERVK -3442 1820 1 3404 110 7 24 chr6 137073379 137073917 -52205637 - LTR14 LTR ERVK -19 529 1 442 293 83 60 chr6 137074195 137074620 -52204934 + Charlie8 DNA MER1_type 1 430 -1987 266 271 25 139 chr6 137074668 137074912 -52204642 + L2 LINE L2 2174 2389 -925 439 301 39 34 chr6 137075028 137075234 -52204320 + MLT1I LTR MaLR 63 269 -140 24 60 0 30 chr6 137075254 137075287 -52204267 + AT_rich Low_complexity Low_complexity 1 33 -32 2147 156 7 32 chr6 137075287 137075690 -52203864 - L1PA16 LINE L1 -9 6157 5765 24 60 0 30 chr6 137075690 137075723 -52203831 + AT_rich Low_complexity Low_complexity 33 65 0 655 291 62 30 chr6 137076009 137076414 -52203140 + L1MEd LINE L1 423 840 -5279 189 0 0 0 chr6 137076507 137076528 -52203026 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 26 30 0 0 chr6 137077183 137077216 -52202338 + AT_rich Low_complexity Low_complexity 1 33 0 2142 112 3 0 chr6 137077537 137077832 -52201722 - AluSc SINE Alu -13 296 1 490 281 71 5 chr6 137078934 137079130 -52200424 - L1ME3A LINE L1 0 6170 5962 1173 214 43 43 chr6 137079291 137079394 -52200160 - MER58B DNA MER1_type -2090 330 228 3152 114 45 2 chr6 137079394 137079887 -52199667 + MER75 DNA T2_type 1 514 0 1173 214 43 43 chr6 137079887 137080110 -52199444 - MER58B DNA MER1_type -2191 229 4 255 266 101 30 chr6 137080287 137080486 -52199068 - L2 LINE L2 -220 3093 2881 2810 100 102 22 chr6 137080884 137081346 -52198208 + MER1A DNA MER1_type 31 529 0 240 252 112 112 chr6 137081925 137082139 -52197415 + L2 LINE L2 3090 3303 -10 251 163 20 0 chr6 137082510 137082559 -52196995 - HSMAR1 DNA Mariner 0 1287 1238 9660 196 49 20 chr6 137082685 137087209 -52192345 + L1PB2 LINE L1 546 4569 -2298 1461 190 118 0 chr6 137087209 137087488 -52192066 + AluJb SINE Alu 1 312 0 9660 196 49 20 chr6 137087488 137089855 -52189699 + L1PB2 LINE L1 4569 6866 -1 1001 232 50 14 chr6 137089848 137090145 -52189409 + L1ME2 LINE L1 5813 6120 -44 * 838 68 0 0 chr6 137090154 137090257 -52189297 + AluY SINE Alu 1 103 -208 2297 60 0 3 chr6 137090323 137090607 -52188947 + AluY SINE Alu 1 283 -28 37748 65 5 8 chr6 137090759 137090815 -52188739 - HERVL-A1 LTR ERVL -185 5469 5414 2373 82 3 0 chr6 137090815 137091108 -52188446 - AluSc SINE Alu -15 294 1 37748 65 5 8 chr6 137091108 137096534 -52183020 - HERVL-A1 LTR ERVL -240 5414 1 330 107 0 18 chr6 137096534 137096590 -52182964 - MLT2A1 LTR ERVL 0 453 399 2995 69 20 5 chr6 137096630 137097023 -52182531 - MLT2A1 LTR ERVL -45 399 1 2002 261 55 28 chr6 137097027 137097858 -52181696 + L1MEc LINE L1 469 1322 -5074 21 57 0 0 chr6 137097907 137097942 -52181612 + AT_rich Low_complexity Low_complexity 1 35 0 2416 135 33 30 chr6 137098094 137098523 -52181031 + Tigger2a DNA MER2_type 5 434 0 238 293 0 0 chr6 137098554 137098612 -52180942 + CT-rich Low_complexity Low_complexity 4 61 0 1807 117 0 119 chr6 137099223 137099566 -52179988 + AluSx SINE Alu 1 302 0 2015 151 0 7 chr6 137100066 137100371 -52179183 - AluSx SINE Alu -9 303 1 223 214 82 102 chr6 137101311 137101409 -52178145 - MIR3 SINE MIR -109 99 4 1261 252 23 69 chr6 137102570 137102881 -52176673 + MLT1C LTR MaLR 6 289 -178 2353 94 3 0 chr6 137102881 137103189 -52176365 + AluSx SINE Alu 1 309 -3 1261 252 23 69 chr6 137103189 137103357 -52176197 + MLT1C LTR MaLR 289 463 -4 321 363 122 35 chr6 137103544 137103618 -52175936 + L2 LINE L2 178 244 -3070 438 204 73 147 chr6 137103618 137103680 -52175874 - MER45A DNA AcHobo -1403 178 113 231 58 19 39 chr6 137103680 137103732 -52175822 + (TAAAA)n Simple_repeat Simple_repeat 2 52 0 438 204 73 147 chr6 137103732 137103804 -52175750 - MER45A DNA AcHobo -1468 113 59 1683 166 0 11 chr6 137103804 137103915 -52175639 + AluJb SINE Alu 12 123 -189 323 0 48 0 chr6 137103915 137103957 -52175597 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1683 166 0 11 chr6 137103957 137104128 -52175426 + AluJb SINE Alu 123 291 -21 438 204 73 147 chr6 137104128 137104183 -52175371 - MER45A DNA AcHobo -1522 59 2 321 363 122 35 chr6 137104183 137104764 -52174790 + L2 LINE L2 244 890 -2424 247 329 14 0 chr6 137105226 137105299 -52174255 - L2 LINE L2 0 3313 3240 31 26 0 0 chr6 137105555 137105593 -52173961 + AT_rich Low_complexity Low_complexity 1 38 0 332 159 159 0 chr6 137105705 137105774 -52173780 + MADE1 DNA Mariner 1 80 0 332 303 64 32 chr6 137105825 137106013 -52173541 + MIR SINE MIR 3 196 -66 311 291 22 50 chr6 137107545 137107727 -52171827 + MIR3 SINE MIR 29 205 -3 2227 172 30 104 chr6 137108827 137109462 -52170092 - L1MB7 LINE L1 -11 6173 5586 26 0 0 0 chr6 137109486 137109512 -52170042 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr6 137109964 137109990 -52169564 + AT_rich Low_complexity Low_complexity 1 26 0 2276 97 10 0 chr6 137110285 137110585 -52168969 + AluSc SINE Alu 1 303 -6 204 125 0 0 chr6 137111389 137111421 -52168133 + (TG)n Simple_repeat Simple_repeat 2 33 0 24 32 0 0 chr6 137111467 137111498 -52168056 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 137111526 137111547 -52168007 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 137111798 137111819 -52167735 + AT_rich Low_complexity Low_complexity 1 21 0 372 372 41 5 chr6 137111886 137112082 -52167472 - L2 LINE L2 -674 2640 2438 2047 217 38 13 chr6 137112145 137112596 -52166958 + MLT1C LTR MaLR 6 467 0 243 279 209 8 chr6 137113454 137113583 -52165971 - MIR SINE MIR -71 191 37 414 269 28 50 chr6 137115344 137115526 -52164028 - L1ME LINE L1 -402 5719 5542 332 301 164 43 chr6 137115655 137116077 -52163477 - L1ME LINE L1 -797 5349 4877 428 351 106 40 chr6 137116416 137116917 -52162637 + L2 LINE L2 200 733 -2581 204 361 125 52 chr6 137117922 137118329 -52161225 - L2 LINE L2 -25 3247 2811 22 0 0 0 chr6 137119831 137119853 -52159701 + AT_rich Low_complexity Low_complexity 1 22 0 453 265 88 44 chr6 137120511 137120760 -52158794 - MIR SINE MIR -2 260 1 361 324 148 23 chr6 137121292 137121508 -52158046 + MIR SINE MIR 9 251 -11 252 277 0 0 chr6 137121596 137121661 -52157893 - L1ME LINE L1 -485 5636 5572 828 167 27 13 chr6 137122092 137122242 -52157312 + AluSg/x SINE Alu 135 286 -24 37 23 0 0 chr6 137122242 137122286 -52157268 + AT_rich Low_complexity Low_complexity 1 44 0 1752 182 0 0 chr6 137122387 137122673 -52156881 + AluJb SINE Alu 1 286 -26 269 0 56 0 chr6 137122674 137122710 -52156844 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 311 358 103 45 chr6 137122942 137123252 -52156302 - L2 LINE L2 -5 3267 2940 198 234 52 78 chr6 137123328 137123405 -52156149 + L2 LINE L2 3198 3272 0 2306 70 0 29 chr6 137123557 137123870 -52155684 + AluY SINE Alu 1 304 -7 27 0 0 0 chr6 137124475 137124502 -52155052 + AT_rich Low_complexity Low_complexity 1 27 0 314 190 51 95 chr6 137124573 137124644 -52154910 - L1ME4a LINE L1 -165 5956 5892 2427 57 14 3 chr6 137124644 137124941 -52154613 - AluSp SINE Alu -13 300 1 314 190 51 95 chr6 137124941 137125006 -52154548 - L1ME4a LINE L1 -229 5892 5826 418 276 172 6 chr6 137125071 137125234 -52154320 + MIR SINE MIR 73 262 0 276 317 19 0 chr6 137125538 137125642 -52153912 - LTR16A LTR ERVL -166 284 179 3091 144 136 89 chr6 137125886 137126105 -52153449 + L1MC3 LINE L1 6885 7092 -693 268 292 0 0 chr6 137126105 137126170 -52153384 + MLT1F1 LTR MaLR 44 108 -459 3091 144 136 89 chr6 137126170 137126727 -52152827 + L1MC3 LINE L1 7092 7764 -21 2616 167 45 27 chr6 137126742 137127294 -52152260 + L1MB2 LINE L1 5603 6164 -7 190 333 43 0 chr6 137128286 137128355 -52151199 - MIR SINE MIR -91 117 46 557 28 0 14 chr6 137130526 137130598 -52148956 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 2118 50 4 0 chr6 137130711 137130999 -52148555 + L1PA7 LINE L1 5882 6170 0 1467 65 0 5 chr6 137131390 137131574 -52147980 + AluY SINE Alu 119 301 -10 242 303 67 11 chr6 137131752 137131841 -52147713 - MIR SINE MIR -13 249 156 396 314 127 13 chr6 137132105 137132404 -52147150 + L1 LINE L1 3605 3937 -2209 1078 228 17 4 chr6 137132622 137132855 -52146699 - MIR SINE MIR -25 237 2 545 325 115 63 chr6 137132877 137133878 -52145676 + L1 LINE L1 4184 5236 -910 2337 85 3 0 chr6 137134088 137134382 -52145172 + AluY SINE Alu 1 295 -16 27 0 0 0 chr6 137134384 137134411 -52145143 + AT_rich Low_complexity Low_complexity 1 27 0 348 325 143 17 chr6 137136175 137136412 -52143142 + L3 LINE CR1 1130 1396 -181 343 300 85 35 chr6 137136578 137136778 -52142776 + MIR SINE MIR 41 250 -12 23 0 0 0 chr6 137137417 137137440 -52142114 + AT_rich Low_complexity Low_complexity 1 23 0 188 262 0 0 chr6 137138149 137138191 -52141363 - MIR SINE MIR -69 139 98 486 278 90 67 chr6 137138206 137138319 -52141235 + MER93a LTR ERV1 6 115 -287 1954 143 3 0 chr6 137138319 137138606 -52140948 - AluSx SINE Alu -24 288 1 486 278 90 67 chr6 137138606 137138880 -52140674 + MER93a LTR ERV1 115 402 0 21 0 0 0 chr6 137139591 137139612 -52139942 + AT_rich Low_complexity Low_complexity 1 21 0 180 294 0 39 chr6 137139859 137139910 -52139644 + MIR SINE MIR 44 92 -116 226 162 0 0 chr6 137140002 137140039 -52139515 - tRNA-Gly-GGA tRNA tRNA -37 38 2 618 292 40 31 chr6 137141026 137141252 -52138302 + MIR SINE MIR 20 247 -15 24 67 0 0 chr6 137143298 137143343 -52136211 + AT_rich Low_complexity Low_complexity 1 45 0 1314 242 67 17 chr6 137143669 137144029 -52135525 - MLT2C1 LTR ERVL -19 378 1 880 215 53 35 chr6 137144029 137144257 -52135297 - ERVL-C1 LTR ERVL -2 5762 5531 12798 196 34 18 chr6 137144292 137146847 -52132707 - ERVL-C1 LTR ERVL -289 5475 2880 952 209 22 0 chr6 137146846 137147028 -52132526 - ERVL-C1 LTR ERVL -3338 2426 2241 * 1954 329 87 63 chr6 137147053 137148712 -52130842 - ERVL-C1 LTR ERVL -4057 1707 1 229 213 21 0 chr6 137148792 137148839 -52130715 + (TATG)n Simple_repeat Simple_repeat 4 51 0 306 0 0 0 chr6 137148844 137148878 -52130676 + (TG)n Simple_repeat Simple_repeat 1 34 0 1130 206 82 26 chr6 137148879 137149185 -52130369 - MLT2C1 LTR ERVL -48 349 27 2199 104 10 0 chr6 137150222 137150520 -52129034 + AluSx SINE Alu 1 301 -11 749 165 6 61 chr6 137151510 137151674 -52127880 - AluSp/q SINE Alu -2 311 157 1944 167 5 40 chr6 137151796 137152174 -52127380 + MLT1A1 LTR MaLR 1 365 0 255 197 14 42 chr6 137152174 137152245 -52127309 - L2 LINE L2 -97 3216 3148 26 50 0 0 chr6 137152934 137152974 -52126580 + AT_rich Low_complexity Low_complexity 1 40 0 181 205 26 0 chr6 137153399 137153438 -52126116 + L2 LINE L2 3028 3067 -246 383 244 14 82 chr6 137153546 137153692 -52125862 - L1MA9 LINE L1 0 6291 6157 192 176 0 0 chr6 137153723 137153757 -52125797 + L2 LINE L2 3280 3313 0 30 0 0 0 chr6 137154630 137154660 -52124894 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 137154836 137154864 -52124690 + AT_rich Low_complexity Low_complexity 1 28 0 2870 6 0 0 chr6 137155403 137155714 -52123840 - AluYa5 SINE Alu 0 311 1 386 248 85 46 chr6 137155714 137155867 -52123687 - L2 LINE L2 -7 3306 3148 289 83 0 0 chr6 137156505 137156553 -52123001 - L1PA13 LINE L1 0 6163 6116 4025 178 47 22 chr6 137158069 137159142 -52120412 - L1MB8 LINE L1 -9 6169 5068 2158 115 16 13 chr6 137159178 137159490 -52120064 - AluSp SINE Alu 0 313 1 546 270 22 7 chr6 137159610 137159747 -52119807 - MIR SINE MIR -91 171 33 1751 195 90 19 chr6 137160307 137160728 -52118826 - MLT1C LTR MaLR -16 451 1 1511 170 69 7 chr6 137161285 137161561 -52117993 - AluJo SINE Alu -17 295 3 214 304 38 0 chr6 137162714 137162793 -52116761 + MIR SINE MIR 84 165 -97 * 594 286 173 5 chr6 137162781 137163001 -52116553 - MIR SINE MIR 0 262 6 297 0 0 0 chr6 137163329 137163362 -52116192 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 2209 65 72 0 chr6 137164145 137164435 -52115119 + AluY SINE Alu 1 311 0 746 196 0 14 chr6 137165802 137165945 -52113609 + FLAM_C SINE Alu 1 141 -2 180 369 93 9 chr6 137166345 137166559 -52112995 + L2 LINE L2 2080 2311 -1003 900 266 106 36 chr6 137166774 137167217 -52112337 - MLT1J LTR MaLR -37 474 1 246 32 0 0 chr6 137167363 137167394 -52112160 + (TTG)n Simple_repeat Simple_repeat 2 32 0 236 245 0 0 chr6 137167513 137167562 -52111992 - L2 LINE L2 0 3313 3265 2388 78 0 0 chr6 137167878 137168172 -52111382 + AluSc SINE Alu 1 294 -15 644 183 0 7 chr6 137168540 137168677 -52110877 - MER96B DNA MER1_type? -245 172 37 190 281 0 35 chr6 137169229 137169286 -52110268 + L3 LINE CR1 1521 1575 -2 26 88 0 0 chr6 137169536 137169604 -52109950 + AT_rich Low_complexity Low_complexity 1 68 0 273 227 144 31 chr6 137170565 137170662 -52108892 - L2 LINE L2 -7 3306 3199 435 319 59 40 chr6 137170935 137171258 -52108296 - L2 LINE L2 -429 2885 2557 3671 122 2 19 chr6 137172780 137173306 -52106248 - MER1A DNA MER1_type 0 529 13 184 265 41 0 chr6 137173935 137173984 -52105570 - MER5A DNA MER1_type -28 161 111 252 333 9 46 chr6 137174076 137174184 -52105370 - MER5A DNA MER1_type -25 164 61 335 280 21 11 chr6 137174475 137174568 -52104986 - MIR3 SINE MIR -4 204 111 23 152 0 0 chr6 137174763 137174796 -52104758 + AT_rich Low_complexity Low_complexity 1 33 0 2045 81 41 0 chr6 137174991 137175262 -52104292 - AluY SINE Alu -15 296 15 195 42 0 0 chr6 137175579 137175603 -52103951 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 199 360 116 44 chr6 137175664 137175889 -52103665 - L2 LINE L2 -9 3263 3023 192 301 180 62 chr6 137176248 137176797 -52102757 - L2 LINE L2 -337 2977 2364 274 314 70 27 chr6 137176872 137177072 -52102482 - MIR SINE MIR -48 214 4 3866 141 14 7 chr6 137177171 137177798 -52101756 - MER39B LTR ERV1 -25 619 1 683 369 62 0 chr6 137177799 137178124 -52101430 + L2 LINE L2 2583 2927 -387 217 227 0 0 chr6 137178357 137178401 -52101153 + L2 LINE L2 3270 3313 0 258 77 26 0 chr6 137231314 137231353 -52048201 - MER4B LTR ERV1 0 610 571 2565 254 40 8 chr6 137231456 137232542 -52047012 + L1P3 LINE L1 1225 2348 -4113 24 0 0 0 chr6 137232701 137232725 -52046829 + AT_rich Low_complexity Low_complexity 1 24 0 1595 206 3 31 chr6 137233421 137233776 -52045778 + MER46B DNA MER2_type 2 221 -15 333 166 64 13 chr6 137233786 137233943 -52045611 + (TA)n Simple_repeat Simple_repeat 2 166 0 7748 67 4 1 chr6 137234213 137235253 -52044301 + L1P LINE L1 4235 5277 -869 251 257 35 76 chr6 137235360 137235504 -52044050 + MARNA DNA Mariner 424 561 -25 415 303 121 26 chr6 137236146 137236377 -52043177 - MARNA DNA Mariner -328 258 6 26 30 0 0 chr6 137236664 137236697 -52042857 + AT_rich Low_complexity Low_complexity 1 33 0 24 85 0 0 chr6 137237389 137237448 -52042106 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr6 137237912 137237936 -52041618 + AT_rich Low_complexity Low_complexity 1 24 0 237 310 43 49 chr6 137239054 137239238 -52040316 + LTR67 LTR ERVL 373 555 -2 591 233 59 25 chr6 137239750 137240016 -52039538 + AluJb SINE Alu 46 312 0 2114 127 0 7 chr6 137240022 137240322 -52039232 + AluSx SINE Alu 1 298 -14 248 139 70 0 chr6 137240579 137240622 -52038932 + MER77 LTR ERV1 45 90 -515 2018 97 0 0 chr6 137240762 137241029 -52038525 + AluY SINE Alu 29 295 -16 4318 109 8 2 chr6 137241363 137241998 -52037556 + Harlequin LTR ERV1 5238 5876 -1020 6245 226 52 16 chr6 137242104 137243569 -52035985 + L1M3de LINE L1 717 2137 -4516 228 213 50 38 chr6 137243673 137243753 -52035801 + AluJ/FRAM SINE Alu 222 302 0 1170 236 35 61 chr6 137243766 137244233 -52035321 + L1ME2 LINE L1 4490 4943 -1203 2309 101 0 3 chr6 137244233 137244530 -52035024 + AluSq SINE Alu 1 296 -17 1170 236 35 61 chr6 137244530 137244583 -52034971 + L1ME2 LINE L1 4943 4996 -1150 2103 114 0 13 chr6 137244588 137244886 -52034668 + AluSx SINE Alu 4 297 -15 491 45 15 0 chr6 137244886 137244952 -52034602 + (GA)n Simple_repeat Simple_repeat 1 67 0 335 282 20 78 chr6 137244952 137245296 -52034258 + L1ME2 LINE L1 4981 5304 -842 215 258 108 21 chr6 137245424 137245517 -52034037 - MIR SINE MIR -150 112 12 635 277 38 45 chr6 137246407 137246699 -52032855 + L2 LINE L2 1326 1615 -1699 194 250 58 0 chr6 137246698 137246750 -52032804 + L2 LINE L2 1165 1219 -2095 * 303 286 122 92 chr6 137247784 137248228 -52031326 - L1M2 LINE L1 -5893 956 500 199 206 309 0 chr6 137248574 137248642 -52030912 + L2 LINE L2 3187 3275 -38 464 257 49 22 chr6 137248644 137248827 -52030727 + MER5A DNA MER1_type 2 189 0 3655 111 0 4 chr6 137249213 137249771 -52029783 - L1P3 LINE L1 -4886 1575 1020 * 7698 149 2 4 chr6 137249762 137251128 -52028426 + L1P LINE L1 1259 2622 -3524 1368 250 78 53 chr6 137251234 137251497 -52028057 + L1ME2 LINE L1 5290 5545 -619 1180 153 0 0 chr6 137251497 137251687 -52027867 + L1PA16 LINE L1 5968 6157 -9 1368 250 78 53 chr6 137251687 137252067 -52027487 + L1ME2 LINE L1 5545 5949 -215 2607 122 0 0 chr6 137252106 137252466 -52027088 - THE1B LTR MaLR -4 360 1 30 45 0 0 chr6 137252645 137252689 -52026865 + AT_rich Low_complexity Low_complexity 1 44 0 1619 216 123 75 chr6 137253260 137253779 -52025775 + MER4D LTR ERV1 1 579 -324 261 0 0 0 chr6 137253779 137253808 -52025746 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1619 216 123 75 chr6 137253808 137254150 -52025404 + MER4D LTR ERV1 579 903 0 237 355 105 0 chr6 137254194 137254318 -52025236 - L2 LINE L2 -840 2474 2338 263 67 44 0 chr6 137255374 137255419 -52024135 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1844 147 3 18 chr6 137255422 137255708 -52023846 - AluJb SINE Alu -30 282 1 817 142 14 7 chr6 137256612 137256760 -52022794 - L1P3 LINE L1 -4886 1575 1427 1072 62 0 0 chr6 137257028 137257158 -52022396 + AluSg SINE Alu 1 130 -180 207 0 0 0 chr6 137257165 137257188 -52022366 + (A)n Simple_repeat Simple_repeat 1 23 0 2162 218 47 40 chr6 137257260 137257862 -52021692 + MLT1E3 LTR MaLR 1 606 -18 28 48 0 0 chr6 137257968 137258010 -52021544 + AT_rich Low_complexity Low_complexity 1 42 0 2235 106 0 0 chr6 137258172 137258475 -52021079 + AluSx SINE Alu 1 303 -9 619 233 23 11 chr6 137258596 137258772 -52020782 + MER5B DNA MER1_type 1 178 0 754 221 0 7 chr6 137258851 137258991 -52020563 - FAM SINE Alu -29 156 18 616 193 7 7 chr6 137259234 137259379 -52020175 + GA-rich Low_complexity Low_complexity 3 147 0 9236 171 1 2 chr6 137259804 137261393 -52018161 - HERVE LTR ERV1 -1775 6038 4451 1377 71 0 0 chr6 137261393 137261562 -52017992 + 7SLRNA srpRNA srpRNA 83 251 -69 9662 214 3 3 chr6 137261562 137263478 -52016076 - HERVE LTR ERV1 -4507 3306 1392 913 195 0 0 chr6 137263767 137263941 -52015613 - MER50 LTR ERV1 0 734 558 1260 167 191 16 chr6 137263941 137264198 -52015356 + AluJb SINE Alu 1 302 0 913 195 0 0 chr6 137264198 137264213 -52015341 - MER50 LTR ERV1 -175 559 545 203 30 0 61 chr6 137264214 137264247 -52015307 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 3038 152 12 37 chr6 137264249 137264358 -52015196 - MER50 LTR ERV1 -156 578 468 2135 106 3 34 chr6 137264358 137264678 -52014876 - AluSg SINE Alu 0 310 1 3038 152 12 37 chr6 137264678 137265161 -52014393 - MER50 LTR ERV1 -266 468 1 252 296 219 32 chr6 137265493 137265831 -52013723 - L2 LINE L2 -65 3248 2848 471 248 41 28 chr6 137266128 137266273 -52013281 - L2 LINE L2 -8 3305 3159 1563 108 36 5 chr6 137266293 137266516 -52013038 - MER30 DNA MER1_type 0 230 1 24 0 0 0 chr6 137266736 137266760 -52012794 + AT_rich Low_complexity Low_complexity 1 24 0 1193 206 50 87 chr6 137267331 137267835 -52011719 - MER31A LTR ERV1 0 485 1 1256 78 17 0 chr6 137268226 137268406 -52011148 - L1MA2 LINE L1 0 6304 6122 2264 88 0 0 chr6 137268969 137269263 -52010291 + AluY SINE Alu 1 294 -17 276 307 94 30 chr6 137269929 137270258 -52009296 + L1ME3A LINE L1 5616 5965 -205 431 325 102 10 chr6 137270470 137270765 -52008789 - L2 LINE L2 -609 2705 2384 1876 107 0 0 chr6 137271005 137271249 -52008305 + AluSq SINE Alu 2 245 -68 21 0 0 0 chr6 137271351 137271372 -52008182 + AT_rich Low_complexity Low_complexity 1 21 0 750 252 29 25 chr6 137271374 137271616 -52007938 - AluJo SINE Alu -30 282 40 297 291 7 20 chr6 137271731 137271882 -52007672 - L1M4 LINE L1 -1779 4367 4219 291 268 103 71 chr6 137271885 137271912 -52007642 - L1M4 LINE L1 -1978 4168 4143 1977 124 26 54 chr6 137271912 137272298 -52007256 + THE1C LTR MaLR 1 375 0 291 268 103 71 chr6 137272298 137272554 -52007000 - L1M4 LINE L1 -2003 4143 3869 2635 43 0 0 chr6 137272554 137272859 -52006695 - AluY SINE Alu -4 307 3 291 268 103 71 chr6 137272859 137272925 -52006629 - L1M4 LINE L1 -2277 3869 3807 1274 295 20 20 chr6 137272944 137273348 -52006206 + MLT1H1 LTR MaLR 139 542 -13 592 244 29 42 chr6 137273364 137273602 -52005952 + L1M4 LINE L1 4754 4988 -1158 728 214 8 0 chr6 137273685 137273816 -52005738 - FLAM_C SINE Alu -1 132 1 457 256 77 43 chr6 137273972 137274206 -52005348 - L1M4 LINE L1 -1498 5234 4993 1441 223 4 7 chr6 137274251 137274525 -52005029 - AluJo SINE Alu -39 273 1 2285 83 0 10 chr6 137274528 137274841 -52004713 - AluY SINE Alu -1 310 1 2109 177 68 12 chr6 137274850 137275346 -52004208 - L1MA7 LINE L1 -2 6289 5766 1183 194 18 18 chr6 137275321 137275600 -52003954 - L1M4 LINE L1 -1850 4882 4604 * 1918 158 8 8 chr6 137275702 137276057 -52003497 + THE1C LTR MaLR 20 374 -1 1444 240 64 32 chr6 137276057 137277142 -52002412 - L1M4 LINE L1 -3572 3160 2038 8465 131 35 44 chr6 137277250 137278781 -52000773 + THE1-int LTR MaLR 16 1533 -47 2176 270 31 16 chr6 137278882 137279773 -51999781 - L1M4 LINE L1 -5466 1187 11 259 78 0 59 chr6 137279921 137279972 -51999582 - L1MA6 LINE L1 0 6300 6253 * 302 261 43 9 chr6 137279970 137280085 -51999469 - L1M3d LINE L1 -5772 119 1 1058 191 42 21 chr6 137280283 137280519 -51999035 + MLT1D LTR MaLR 265 505 0 353 310 84 39 chr6 137280589 137280944 -51998610 + MLT1I LTR MaLR 3 373 -36 21 0 0 0 chr6 137281143 137281164 -51998390 + AT_rich Low_complexity Low_complexity 1 21 0 439 122 0 0 chr6 137281592 137281666 -51997888 - L1MA3 LINE L1 0 6305 6232 294 236 36 64 chr6 137283202 137283342 -51996212 - HAL1 LINE L1 -108 2399 2264 467 263 116 11 chr6 137283377 137283567 -51995987 - L2 LINE L2 0 3313 3104 343 217 14 0 chr6 137283810 137283879 -51995675 - MLT1L LTR MaLR -416 199 130 376 280 47 28 chr6 137283977 137284188 -51995366 - HAL1 LINE L1 -775 1732 1518 381 249 47 68 chr6 137284229 137284594 -51994960 - HAL1 LINE L1 -1160 1347 991 366 331 78 6 chr6 137285570 137285736 -51993818 + MIR SINE MIR 20 197 -65 1877 139 50 4 chr6 137286074 137286354 -51993200 - AluSx SINE Alu -19 293 1 186 133 0 0 chr6 137286775 137286805 -51992749 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr6 137288051 137288073 -51991481 + AT_rich Low_complexity Low_complexity 1 22 0 341 356 83 0 chr6 137288102 137288234 -51991320 - MIR SINE MIR -116 146 4 765 204 194 56 chr6 137288334 137288711 -51990843 - MER39 LTR ERV1 -57 650 222 264 265 10 20 chr6 137288702 137288804 -51990750 - LTR48B LTR ERV1 -543 101 1 * 2008 247 113 2 chr6 137288852 137289391 -51990163 + MLT2F LTR ERVL 14 612 -51 249 33 0 0 chr6 137289430 137289460 -51990094 + (TAGA)n Simple_repeat Simple_repeat 3 32 0 266 213 0 0 chr6 137289483 137289544 -51990010 - Charlie2 DNA MER1_type -195 2667 2607 2151 129 0 10 chr6 137289551 137289854 -51989700 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr6 137290047 137290075 -51989479 + AT_rich Low_complexity Low_complexity 1 28 0 3773 158 20 43 chr6 137290075 137290862 -51988692 - L1MA4 LINE L1 -9 6291 5523 180 0 0 0 chr6 137290906 137290926 -51988628 + (TA)n Simple_repeat Simple_repeat 1 20 0 211 150 67 0 chr6 137290963 137291023 -51988531 + (TA)n Simple_repeat Simple_repeat 1 64 0 325 92 59 33 chr6 137291035 137291187 -51988367 + (TA)n Simple_repeat Simple_repeat 1 156 0 631 125 32 0 chr6 137291198 137291485 -51988069 + (TA)n Simple_repeat Simple_repeat 1 296 0 343 236 27 20 chr6 137291496 137291644 -51987910 + (TA)n Simple_repeat Simple_repeat 1 149 0 219 185 33 0 chr6 137291666 137291758 -51987796 + (TA)n Simple_repeat Simple_repeat 1 95 0 28 0 0 0 chr6 137291765 137291793 -51987761 + AT_rich Low_complexity Low_complexity 1 28 0 43 35 0 0 chr6 137291818 137291875 -51987679 + AT_rich Low_complexity Low_complexity 1 57 0 553 167 0 0 chr6 137291896 137291980 -51987574 - AluJ SINE Alu -94 218 135 21 0 0 0 chr6 137292297 137292318 -51987236 + AT_rich Low_complexity Low_complexity 1 21 0 255 240 10 125 chr6 137292899 137292962 -51986592 + L2 LINE L2 3225 3275 -38 1172 206 60 92 chr6 137292962 137293365 -51986189 - MLT1B LTR MaLR 0 390 1 255 240 10 125 chr6 137293365 137293397 -51986157 + L2 LINE L2 3275 3309 -4 306 329 88 6 chr6 137293813 137293983 -51985571 + MIR SINE MIR 58 241 -21 278 235 29 15 chr6 137294036 137294104 -51985450 - L2 LINE L2 -56 3257 3189 223 171 0 0 chr6 137294111 137294152 -51985402 + (TG)n Simple_repeat Simple_repeat 2 42 0 281 286 33 11 chr6 137295103 137295194 -51984360 - L2 LINE L2 0 3272 3180 436 144 128 48 chr6 137295539 137295664 -51983890 + MIR SINE MIR 123 257 -5 25 0 0 0 chr6 137295664 137295689 -51983865 + AT_rich Low_complexity Low_complexity 1 25 0 326 241 12 0 chr6 137296056 137296139 -51983415 - MER96B DNA MER1_type? -13 404 321 25 51 0 0 chr6 137296140 137296179 -51983375 + AT_rich Low_complexity Low_complexity 1 39 0 852 148 15 0 chr6 137296196 137296331 -51983223 - AluJ SINE Alu -171 141 5 304 315 117 0 chr6 137297618 137297729 -51981825 - L2 LINE L2 0 3313 3190 307 330 31 23 chr6 137297995 137298146 -51981408 - MIR3 SINE MIR -47 161 7 2172 65 48 14 chr6 137298243 137298535 -51981019 - AluY SINE Alu -9 302 1 231 125 0 0 chr6 137299356 137299396 -51980158 + (CA)n Simple_repeat Simple_repeat 1 40 0 1843 211 81 22 chr6 137299617 137300199 -51979355 + L1MC4 LINE L1 7171 7786 -256 215 172 0 35 chr6 137300212 137300270 -51979284 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 201 154 0 0 chr6 137300332 137300371 -51979183 + A-rich Low_complexity Low_complexity 2 40 0 24 0 0 0 chr6 137301636 137301660 -51977894 + AT_rich Low_complexity Low_complexity 1 24 0 2032 145 0 20 chr6 137302354 137302706 -51976848 + MER46B DNA MER2_type 2 221 -15 447 127 64 13 chr6 137302716 137302873 -51976681 + (TA)n Simple_repeat Simple_repeat 2 166 0 305 133 67 0 chr6 137303010 137303070 -51976484 - MER46B DNA MER2_type 0 236 173 594 88 0 0 chr6 137303098 137303178 -51976376 - MER46B DNA MER2_type -205 31 77 506 171 0 0 chr6 137303635 137303723 -51975831 - MER46B DNA MER2_type -269 92 5 25 51 0 0 chr6 137303889 137303928 -51975626 + AT_rich Low_complexity Low_complexity 1 39 0 544 234 69 55 chr6 137304224 137304442 -51975112 - L1ME3A LINE L1 -8 6162 5942 14384 128 11 11 chr6 137305778 137308917 -51970637 + L1PA7 LINE L1 3019 6151 -3 522 279 41 46 chr6 137309870 137310067 -51969487 + MIR SINE MIR 66 261 -1 192 361 33 77 chr6 137310237 137310420 -51969134 - MIR3 SINE MIR -28 180 6 416 241 60 0 chr6 137310764 137310880 -51968674 + MIR SINE MIR 114 236 -26 472 276 128 0 chr6 137311128 137311284 -51968270 + MER5B DNA MER1_type 2 177 -1 1497 155 25 22 chr6 137311306 137311583 -51967971 + LTR9 LTR ERV1 335 612 0 733 181 28 117 chr6 137311975 137312224 -51967330 - MLT1H LTR MaLR -218 331 105 2273 225 90 78 chr6 137312252 137313065 -51966489 + MER21B LTR ERV1 17 839 -24 349 237 60 65 chr6 137313178 137313393 -51966161 - Charlie2 DNA MER1_type -608 2254 2041 919 232 5 5 chr6 137313437 137313627 -51965927 - AluJo SINE Alu -108 204 15 509 186 186 0 chr6 137313634 137313801 -51965753 - Charlie2 DNA MER1_type -809 2053 1856 385 306 17 60 chr6 137313792 137314024 -51965530 - Charlie2 DNA MER1_type -2532 330 109 * 2433 175 67 25 chr6 137314342 137314867 -51964687 + MER44D DNA MER2_type 2 603 -2 2177 143 53 29 chr6 137315087 137315470 -51964084 - Tigger2a DNA MER2_type -2274 434 38 2183 91 0 11 chr6 137315470 137315787 -51963767 + AluSq SINE Alu 3 316 0 2177 143 53 29 chr6 137315787 137315815 -51963739 - Tigger2a DNA MER2_type -2670 38 12 2358 91 7 0 chr6 137316163 137316470 -51963084 + AluSp SINE Alu 1 309 -4 2914 119 19 0 chr6 137317309 137317729 -51961825 + MSTA LTR MaLR 1 428 0 1008 159 16 48 chr6 137317729 137317918 -51961636 + MER5A DNA MER1_type 7 189 0 983 237 37 0 chr6 137317927 137318142 -51961412 - MER58A DNA MER1_type -1 223 1 207 89 22 44 chr6 137318350 137318395 -51961159 + (CAAAAA)n Simple_repeat Simple_repeat 6 49 0 724 202 125 0 chr6 137318507 137318675 -51960879 - MER5A DNA MER1_type 0 189 1 337 307 52 42 chr6 137318689 137318881 -51960673 + L2 LINE L2 2380 2573 -741 2147 130 3 0 chr6 137318998 137319305 -51960249 - AluSx SINE Alu -2 310 3 719 233 45 63 chr6 137319709 137319932 -51959622 + MER20 DNA MER1_type 1 219 0 2197 178 46 63 chr6 137320091 137320238 -51959316 - MLT2B2 LTR ERVL 0 515 367 1795 229 21 76 chr6 137320238 137320818 -51958736 + MLT2B3 LTR ERVL 3 550 -4 2197 178 46 63 chr6 137320818 137321192 -51958362 - MLT2B2 LTR ERVL -148 367 3 2069 147 111 8 chr6 137321358 137321746 -51957808 + MSTA LTR MaLR 1 428 0 180 159 23 23 chr6 137321779 137321823 -51957731 - L2 LINE L2 -1 3312 3269 1441 132 4 0 chr6 137322615 137322842 -51956712 + MER57B LTR ERV1 1 228 -206 2440 75 7 0 chr6 137322985 137323293 -51956261 - AluY SINE Alu -1 310 1 181 167 111 74 chr6 137323501 137323555 -51955999 + L3 LINE CR1 612 667 -910 282 313 46 46 chr6 137323589 137323720 -51955834 + MIR SINE MIR 16 146 -62 225 295 16 0 chr6 137323714 137323775 -51955779 - L2 LINE L2 -10 3303 3242 * 622 118 18 2 chr6 137323939 137324167 -51955387 - AluJb SINE Alu -13 299 16 413 263 151 78 chr6 137324249 137324481 -51955073 + MIR SINE MIR 14 262 0 610 232 237 24 chr6 137324517 137324728 -51954826 - MIR SINE MIR -6 256 1 460 285 58 29 chr6 137325386 137325558 -51953996 + MIR SINE MIR 72 248 -14 2185 112 0 7 chr6 137325617 137325922 -51953632 + AluSc SINE Alu 1 303 -6 2256 112 0 3 chr6 137326450 137326745 -51952809 - AluSx SINE Alu -18 294 1 691 266 78 53 chr6 137327613 137327857 -51951697 - MIR SINE MIR 0 262 13 441 236 71 21 chr6 137328962 137329102 -51950452 + MER58A DNA MER1_type 1 147 0 362 283 67 17 chr6 137329133 137329279 -51950275 - MIR3 SINE MIR -49 159 8 350 328 72 6 chr6 137329780 137329960 -51949594 + MIR SINE MIR 59 250 -12 305 315 69 8 chr6 137330520 137330650 -51948904 + MIR3 SINE MIR 31 168 -40 856 191 0 35 chr6 137331133 137331306 -51948248 - FRAM SINE Alu -10 166 1 22 56 0 0 chr6 137331440 137331476 -51948078 + AT_rich Low_complexity Low_complexity 1 36 0 1910 158 0 0 chr6 137331907 137332223 -51947331 - AluSx SINE Alu 0 316 1 2340 111 0 0 chr6 137333368 137333674 -51945880 - AluSq SINE Alu -7 306 1 423 281 197 24 chr6 137335407 137335489 -51944065 - L1MC5 LINE L1 -41 8001 7935 1782 97 108 0 chr6 137335489 137335757 -51943797 - AluSc SINE Alu -12 297 1 423 281 197 24 chr6 137335757 137336028 -51943526 - L1MC5 LINE L1 -107 7935 7604 623 288 0 0 chr6 137336867 137337020 -51942534 + MIR SINE MIR 100 252 -10 1708 154 14 38 chr6 137337031 137337323 -51942231 - AluJo SINE Alu -21 291 7 2373 73 0 3 chr6 137337355 137337655 -51941899 + AluY SINE Alu 11 309 -2 206 304 0 0 chr6 137338037 137338093 -51941461 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 2001 121 0 62 chr6 137338212 137338534 -51941020 - AluSx SINE Alu -10 302 1 30 0 0 0 chr6 137339841 137339871 -51939683 + AT_rich Low_complexity Low_complexity 1 30 0 1413 97 23 9 chr6 137339871 137340088 -51939466 - L1PA10 LINE L1 -11 6157 5938 247 133 0 214 chr6 137340137 137340235 -51939319 - L1ME1 LINE L1 -235 5931 5855 1947 155 3 0 chr6 137340246 137340542 -51939012 - AluSx SINE Alu -13 299 3 629 174 0 13 chr6 137340547 137340702 -51938852 - L1ME1 LINE L1 -984 5162 5010 1265 257 48 30 chr6 137340740 137341199 -51938355 + L1ME1 LINE L1 5695 6161 -5 701 178 0 15 chr6 137341336 137341471 -51938083 - FLAM_C SINE Alu 0 143 11 2100 218 44 24 chr6 137342023 137342721 -51936833 - L1ME1 LINE L1 -1201 4945 4234 304 297 115 27 chr6 137342949 137343097 -51936457 + MIR SINE MIR 53 213 -49 917 224 47 30 chr6 137343532 137343884 -51935670 + MSTD LTR MaLR 1 396 0 1654 194 58 9 chr6 137344164 137344510 -51935044 - MLT1A1 LTR MaLR -2 363 1 23 0 0 0 chr6 137345007 137345030 -51934524 + AT_rich Low_complexity Low_complexity 1 23 0 328 210 45 150 chr6 137345133 137345333 -51934221 + MSTD LTR MaLR 1 179 -217 1369 202 31 25 chr6 137345348 137345670 -51933884 + MSTD LTR MaLR 73 396 0 3648 250 56 38 chr6 137345672 137346224 -51933330 + MSTD-int LTR MaLR 2 542 -1193 3136 94 25 7 chr6 137346224 137346669 -51932885 - MLT2A2 LTR ERVL 0 453 1 3648 250 56 38 chr6 137346669 137347362 -51932192 + MSTD-int LTR MaLR 542 1268 -467 473 292 16 131 chr6 137347926 137348190 -51931364 - L3 LINE CR1 -4 1573 1280 199 0 65 0 chr6 137348190 137348221 -51931333 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 7702 20 0 0 chr6 137348221 137349233 -51930321 - L1PA3 LINE L1 -10 6145 5137 473 292 16 131 chr6 137349233 137349340 -51930214 - L3 LINE CR1 -295 1282 1244 2057 201 72 27 chr6 137350189 137350672 -51928882 + MLT1D LTR MaLR 1 505 0 6531 74 5 16 chr6 137350730 137352091 -51927463 - L1PA8 LINE L1 0 6172 4837 6788 119 3 5 chr6 137352191 137353312 -51926242 - L1P LINE L1 -1025 5121 4004 575 274 47 113 chr6 137353429 137354002 -51925552 - LTR67 LTR ERVL -17 540 6 319 354 80 11 chr6 137354197 137354372 -51925182 - MIR SINE MIR -10 252 66 372 293 55 12 chr6 137354476 137354640 -51924914 + L2 LINE L2 2290 2460 -854 488 351 46 15 chr6 137354667 137354926 -51924628 + L2 LINE L2 3047 3313 0 295 337 210 23 chr6 137354920 137355353 -51924201 + L3 LINE CR1 810 1323 -254 * 292 358 173 26 chr6 137355937 137356515 -51923039 + L2 LINE L2 178 840 -2474 287 358 90 38 chr6 137356550 137357019 -51922535 - LTR67 LTR ERVL -2 555 63 527 240 33 8 chr6 137357160 137357281 -51922273 + MER5A DNA MER1_type 66 189 0 219 338 38 53 chr6 137357162 137357295 -51922259 - MER5A DNA MER1_type -56 133 3 * 3106 101 84 69 chr6 137357842 137358439 -51921115 + MER4B LTR ERV1 1 606 -4 730 220 0 0 chr6 137359712 137359844 -51919710 + FLAM_A SINE Alu 2 133 0 1912 159 3 20 chr6 137359885 137360186 -51919368 - AluSx SINE Alu -16 296 1 2070 90 65 0 chr6 137360948 137361226 -51918328 + AluSq SINE Alu 3 298 -15 22 35 0 0 chr6 137363059 137363088 -51916466 + AT_rich Low_complexity Low_complexity 1 29 0 716 230 62 35 chr6 137363106 137363363 -51916191 + MLT1C LTR MaLR 202 465 -2 338 251 47 68 chr6 137363444 137363521 -51916033 + L1ME4a LINE L1 5935 6012 -109 1681 158 0 35 chr6 137363521 137363832 -51915722 + AluJb SINE Alu 1 300 -12 338 251 47 68 chr6 137363832 137363945 -51915609 + L1ME4a LINE L1 6012 6121 0 228 75 38 38 chr6 137364264 137364317 -51915237 + GA-rich Low_complexity Low_complexity 3 55 0 21 0 0 0 chr6 137364683 137364704 -51914850 + AT_rich Low_complexity Low_complexity 1 21 0 1835 154 151 3 chr6 137366411 137366769 -51912785 - LTR57 LTR ERVL 0 411 1 487 304 54 0 chr6 137367017 137367185 -51912369 - MER117 DNA MER1_type -11 186 10 413 277 0 17 chr6 137367402 137367521 -51912033 + L2 LINE L2 2235 2351 -963 1526 241 33 157 chr6 137367525 137368253 -51911301 + L1MEc LINE L1 39 856 -5540 702 123 92 8 chr6 137368253 137368383 -51911171 - LTR9B LTR ERV1 -416 228 88 7231 56 18 31 chr6 137368383 137369924 -51909630 + SVA Other Other 25 1386 0 1526 241 33 157 chr6 137369924 137369998 -51909556 + L1MEc LINE L1 855 937 -5459 2202 112 0 14 chr6 137369998 137370292 -51909262 + AluSx SINE Alu 1 290 -22 1526 241 33 157 chr6 137370292 137370907 -51908647 + L1MEc LINE L1 937 1395 -5001 319 122 0 0 chr6 137370909 137370958 -51908596 + MER4D LTR ERV1 754 802 -70 275 224 13 0 chr6 137370959 137371035 -51908519 + (TA)n Simple_repeat Simple_repeat 1 77 0 752 122 53 8 chr6 137371152 137371283 -51908271 - LTR57 LTR ERVL -1 410 274 843 285 23 58 chr6 137371283 137371718 -51907836 + L1MEc LINE L1 1398 1817 -4579 966 302 65 20 chr6 137371720 137372121 -51907433 + L2 LINE L2 2338 2756 -558 3544 47 2 7 chr6 137372123 137372573 -51906981 - LTR7 LTR ERV1 -2 448 1 2366 74 48 13 chr6 137372573 137372950 -51906604 - HERVH LTR ERV1 0 7713 7324 1313 115 23 14 chr6 137372950 137373168 -51906386 - HERVH LTR ERV1 -1894 5819 5600 4070 140 9 1 chr6 137373169 137373826 -51905728 - HERVH LTR ERV1 -2564 5149 4488 3088 118 6 4 chr6 137373828 137374330 -51905224 - HERVH LTR ERV1 -3720 3993 3491 847 137 7 0 chr6 137374323 137374469 -51905085 - HERVH LTR ERV1 -4427 3286 3140 * 14123 91 22 17 chr6 137374448 137376667 -51902887 - HERVH LTR ERV1 -4718 2995 766 2240 251 88 19 chr6 137377024 137377845 -51901709 + Zaphod DNA AcHobo 111 987 -3044 987 232 50 24 chr6 137377848 137378189 -51901365 + Zaphod DNA AcHobo 3596 3945 -86 482 263 18 0 chr6 137378715 137378829 -51900725 + MIR SINE MIR 103 218 -44 210 277 0 15 chr6 137379361 137379426 -51900128 + CT-rich Low_complexity Low_complexity 3 66 0 349 275 22 0 chr6 137380173 137380264 -51899290 + MER94 DNA DNA 21 113 -21 2213 126 231 40 chr6 137381123 137381648 -51897906 - MER51A LTR ERV1 -9 625 1 22 35 0 0 chr6 137381685 137381714 -51897840 + AT_rich Low_complexity Low_complexity 1 29 0 443 288 109 22 chr6 137381800 137382029 -51897525 + L2 LINE L2 1374 1622 -1692 2401 294 140 63 chr6 137382185 137382982 -51896572 + L2 LINE L2 490 1224 -2090 2340 69 16 13 chr6 137382982 137383286 -51896268 - AluY SINE Alu -6 305 1 2401 294 140 63 chr6 137383286 137383334 -51896220 + L2 LINE L2 1224 1267 -2047 1926 202 38 76 chr6 137383334 137383863 -51895691 - LTR22 LTR ERVK 0 509 1 2401 294 140 63 chr6 137383863 137384865 -51894689 + L2 LINE L2 1267 2480 -834 1103 262 81 49 chr6 137385312 137385635 -51893919 + Charlie7 DNA MER1_type 14 325 -2287 1748 156 4 8 chr6 137385635 137385898 -51893656 - AluSx SINE Alu -11 301 40 1103 262 81 49 chr6 137385898 137386262 -51893292 + Charlie7 DNA MER1_type 325 723 -1889 385 229 82 27 chr6 137386257 137386440 -51893114 + Charlie7 DNA MER1_type 2420 2612 0 * 689 267 92 17 chr6 137387049 137387289 -51892265 - MIR SINE MIR 0 262 5 565 225 17 22 chr6 137387337 137387369 -51892185 - L1ME2 LINE L1 0 6334 6303 1948 103 70 0 chr6 137387369 137387642 -51891912 + AluSg SINE Alu 1 292 -18 565 225 17 22 chr6 137387642 137387789 -51891765 - L1ME2 LINE L1 -31 6303 6003 521 245 66 28 chr6 137387802 137388014 -51891540 - L1MEc LINE L1 -3726 2489 2270 256 245 0 49 chr6 137388022 137388165 -51891389 - L1MEc LINE L1 -4175 2221 2086 5184 68 0 0 chr6 137389409 137390115 -51889439 + L1P LINE L1 3479 4184 -1962 4981 221 27 12 chr6 137390217 137391621 -51887933 - L1 LINE L1 -2148 3998 2574 1043 204 39 9 chr6 137391621 137391852 -51887702 + THE1C LTR MaLR 14 251 -124 610 302 83 38 chr6 137392106 137392794 -51886760 + L1ME LINE L1 4317 4973 -1189 745 161 0 29 chr6 137392794 137392931 -51886623 + FLAM_C SINE Alu 1 133 0 610 302 83 38 chr6 137392931 137393547 -51886007 + L1ME LINE L1 4973 5672 -490 23 33 0 0 chr6 137394859 137394889 -51884665 + AT_rich Low_complexity Low_complexity 1 30 0 211 368 85 40 chr6 137397149 137397488 -51882066 - L2 LINE L2 -17 3255 2910 1682 165 8 4 chr6 137397702 137397969 -51881585 - AluSx SINE Alu -44 268 1 3538 119 6 0 chr6 137398262 137398766 -51880788 + MER84 LTR ERV1 1 507 0 2141 127 7 0 chr6 137399330 137399637 -51879917 + AluSx SINE Alu 1 309 -3 6114 157 43 12 chr6 137399872 137400938 -51878616 + L1MA4 LINE L1 4105 5136 -1164 186 71 0 0 chr6 137400938 137400966 -51878588 + (CAA)n Simple_repeat Simple_repeat 3 30 0 6114 157 43 12 chr6 137400966 137401079 -51878475 + L1MA4 LINE L1 5136 5244 -1056 266 0 29 0 chr6 137401079 137401113 -51878441 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6114 157 43 12 chr6 137401113 137401970 -51877584 + L1MA4 LINE L1 5244 6198 -102 3133 114 82 6 chr6 137403548 137404058 -51875496 - L1PA11 LINE L1 -1 7611 7063 10583 155 35 3 chr6 137404060 137404376 -51875178 - L1PA11 LINE L1 -2118 5466 5161 312 27 0 0 chr6 137404376 137404413 -51875141 + (TTG)n Simple_repeat Simple_repeat 3 39 0 10583 155 35 3 chr6 137404413 137406022 -51873532 - L1PA11 LINE L1 -2423 5161 3481 2729 250 46 26 chr6 137406122 137406838 -51872716 - L1PA11 LINE L1 -6850 731 2 207 313 0 0 chr6 137408414 137408478 -51871076 - MIR SINE MIR -133 129 66 2582 14 0 0 chr6 137409782 137410227 -51869327 - L1PA2 LINE L1 -602 5553 5109 5159 26 2 2 chr6 137410227 137410831 -51868723 + L1PA2 LINE L1 5547 6152 -3 66 14 0 0 chr6 137410891 137410964 -51868590 + AT_rich Low_complexity Low_complexity 1 73 0 336 87 0 43 chr6 137411388 137411457 -51868097 + (TA)n Simple_repeat Simple_repeat 2 67 0 2177 120 0 16 chr6 137511730 137512046 -51767508 + AluSx SINE Alu 1 311 -1 512 346 14 0 chr6 137512280 137512488 -51767066 + MIR SINE MIR 4 214 -48 21 36 0 0 chr6 137512532 137512560 -51766994 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr6 137512645 137512687 -51766867 + AT_rich Low_complexity Low_complexity 1 42 0 1892 139 17 7 chr6 137512925 137513219 -51766335 - AluJb SINE Alu -14 298 2 1866 158 7 0 chr6 137514557 137514848 -51764706 + AluJo SINE Alu 1 293 -19 1098 165 12 85 chr6 137515178 137515426 -51764128 - MER46A DNA MER2_type -1 235 6 1189 117 17 0 chr6 137516019 137516199 -51763355 + MER41E LTR ERV1 32 214 -298 2211 111 7 3 chr6 137516201 137516508 -51763046 + AluSp SINE Alu 1 308 -5 5447 26 0 0 chr6 137517764 137518383 -51761171 + L1PA4 LINE L1 5537 6155 0 2708 192 8 8 chr6 137518383 137518915 -51760639 + L1M3 LINE L1 5275 5806 -374 233 265 36 12 chr6 137519529 137519612 -51759942 + L1ME3A LINE L1 6046 6130 -40 247 261 84 17 chr6 137519683 137519802 -51759752 + L2 LINE L2 2734 2860 -454 2437 229 54 75 chr6 137521750 137521981 -51757573 - Tigger6a DNA MER2_type -523 1074 840 2370 70 3 0 chr6 137521981 137522267 -51757287 + AluY SINE Alu 2 288 -23 2437 229 54 75 chr6 137522267 137522664 -51756890 - Tigger6a DNA MER2_type -757 840 466 1306 37 6 6 chr6 137522664 137522827 -51756727 - L1PA5 LINE L1 0 6154 5992 2437 229 54 75 chr6 137522827 137523031 -51756523 - Tigger6a DNA MER2_type -1131 466 259 1106 75 34 0 chr6 137523023 137523169 -51756385 + Tigger1 DNA MER2_type 909 1059 -1359 * 3342 171 36 19 chr6 137523269 137523867 -51755687 - L1MC/D LINE L1 -509 5824 5193 2033 140 3 7 chr6 137523867 137524174 -51755380 - AluSx SINE Alu -6 306 1 3342 171 36 19 chr6 137524174 137524628 -51754926 - L1MC/D LINE L1 -1140 5193 4749 450 91 0 15 chr6 137524728 137524794 -51754760 + MSTA LTR MaLR 364 428 0 * 1530 200 18 32 chr6 137524794 137525128 -51754426 - MLT1A1 LTR MaLR -36 329 1 207 0 0 0 chr6 137527513 137527536 -51752018 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 8304 134 11 7 chr6 137528900 137529381 -51750173 + Tigger1 DNA MER2_type 1138 1616 -802 1474 200 3 39 chr6 137529381 137529691 -51749863 + AluJo SINE Alu 1 299 -13 8304 134 11 7 chr6 137529691 137530485 -51749069 + Tigger1 DNA MER2_type 1616 2418 0 427 212 0 0 chr6 137530490 137530575 -51748979 - Tigger6a DNA MER2_type -976 107 23 351 242 108 21 chr6 137534824 137534973 -51744581 + MIR SINE MIR 34 193 -63 1374 163 90 8 chr6 137535385 137535630 -51743924 + AluJo SINE Alu 17 281 -31 22 0 0 0 chr6 137535630 137535652 -51743902 + AT_rich Low_complexity Low_complexity 1 22 0 244 291 63 30 chr6 137537520 137537675 -51741879 - MIR SINE MIR -62 146 10 566 185 8 15 chr6 137537953 137538083 -51741471 - FLAM_C SINE Alu -4 129 1 191 233 117 17 chr6 137539053 137539113 -51740441 - L2 LINE L2 -1 3312 3247 315 238 15 107 chr6 137539565 137539771 -51739783 - L1MC5 LINE L1 -302 7659 7473 183 80 0 0 chr6 137539803 137539828 -51739726 + (TCC)n Simple_repeat Simple_repeat 1 25 0 748 248 182 31 chr6 137539862 137540313 -51739241 - L1MC5 LINE L1 -519 7442 6924 1536 136 21 4 chr6 137540451 137540694 -51738860 + Tigger2 DNA MER2_type 2462 2708 -10 339 302 7 7 chr6 137541313 137541452 -51738102 + (TG)n Simple_repeat Simple_repeat 2 140 0 3328 82 16 18 chr6 137543095 137543544 -51736010 + MER51A LTR ERV1 1 448 -186 26 0 0 0 chr6 137544652 137544678 -51734876 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr6 137546822 137546847 -51732707 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr6 137548686 137548709 -51730845 + AT_rich Low_complexity Low_complexity 1 23 0 189 24 0 73 chr6 137549371 137549412 -51730142 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 5742 163 32 1 chr6 137549574 137550543 -51729011 + Tigger1 DNA MER2_type 1 999 -1419 660 110 28 18 chr6 137550544 137550653 -51728901 + FRAM SINE Alu 54 163 -13 8271 142 51 2 chr6 137550659 137552023 -51727531 + Tigger1 DNA MER2_type 987 2416 -2 227 145 0 60 chr6 137552696 137552779 -51726775 + (TAA)n Simple_repeat Simple_repeat 2 79 0 475 40 110 13 chr6 137553088 137553322 -51726232 + (TA)n Simple_repeat Simple_repeat 1 256 0 1914 83 24 0 chr6 137553374 137553628 -51725926 + AluY SINE Alu 38 297 -14 26 50 0 0 chr6 137555811 137555851 -51723703 + AT_rich Low_complexity Low_complexity 1 40 0 186 211 53 116 chr6 137556036 137556131 -51723423 - MIR SINE MIR -67 141 53 22 35 0 0 chr6 137556960 137556989 -51722565 + AT_rich Low_complexity Low_complexity 1 29 0 900 110 0 0 chr6 137557000 137557118 -51722436 + AluSg/x SINE Alu 174 291 -21 1856 215 46 29 chr6 137557371 137557827 -51721727 + MLT1C LTR MaLR 1 464 -3 5423 205 42 70 chr6 137557829 137558068 -51721486 + MLT1C-int LTR MaLR 2 246 -1125 817 256 42 87 chr6 137558068 137558447 -51721107 - MLT1A1 LTR MaLR 0 365 4 5423 205 42 70 chr6 137558447 137559617 -51719937 + MLT1C-int LTR MaLR 246 1371 0 1931 183 39 25 chr6 137559617 137560049 -51719505 + MLT1C LTR MaLR 1 438 -29 291 192 0 0 chr6 137560049 137560101 -51719453 + MLT1C LTR MaLR 416 467 0 25 0 0 0 chr6 137560651 137560676 -51718878 + AT_rich Low_complexity Low_complexity 1 25 0 23 78 0 0 chr6 137561182 137561233 -51718321 + AT_rich Low_complexity Low_complexity 1 51 0 619 235 133 10 chr6 137561313 137561509 -51718045 - MER58A DNA MER1_type -4 220 1 186 344 170 31 chr6 137561556 137561850 -51717704 + L2 LINE L2 1692 2026 -1288 1217 277 42 23 chr6 137561932 137562365 -51717189 + L1MEc LINE L1 37 477 -5919 865 265 40 7 chr6 137562384 137562656 -51716898 - L1M4 LINE L1 -1394 4752 4472 216 182 0 0 chr6 137562678 137562722 -51716832 + T-rich Low_complexity Low_complexity 1 44 0 859 180 46 141 chr6 137563941 137564224 -51715330 + MLT1B LTR MaLR 3 229 -161 791 59 0 51 chr6 137565235 137565353 -51714201 + L1PA4 LINE L1 6041 6152 -3 7804 182 16 13 chr6 137565382 137567974 -51711580 + L1PB1 LINE L1 3566 6151 0 652 292 105 0 chr6 137568098 137568125 -51711429 + MER5A DNA MER1_type 1 24 -165 198 0 0 0 chr6 137568125 137568147 -51711407 + (CAG)n Simple_repeat Simple_repeat 2 23 0 652 292 105 0 chr6 137568147 137568290 -51711264 + MER5A DNA MER1_type 24 189 0 270 240 73 7 chr6 137568668 137568765 -51710789 + MER5A DNA MER1_type 17 189 0 22 80 0 0 chr6 137569026 137569076 -51710478 + AT_rich Low_complexity Low_complexity 1 50 0 23 54 0 0 chr6 137569222 137569259 -51710295 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr6 137569334 137569360 -51710194 + AT_rich Low_complexity Low_complexity 1 26 0 2336 197 38 52 chr6 137569403 137570306 -51709248 + L1MA4 LINE L1 4863 5703 -597 198 0 0 0 chr6 137570306 137570328 -51709226 + (TG)n Simple_repeat Simple_repeat 2 23 0 2336 197 38 52 chr6 137570328 137570731 -51708823 + L1MA4 LINE L1 5703 6110 -190 1667 183 51 6 chr6 137570731 137571043 -51708511 + MER66B LTR ERV1 1 326 -160 8316 189 18 48 chr6 137571050 137572164 -51707390 + MER66-int LTR ERV1 2704 3850 -2826 1816 177 7 0 chr6 137572164 137572452 -51707102 + AluSx SINE Alu 1 290 -22 8316 189 18 48 chr6 137572452 137572572 -51706982 + MER66-int LTR ERV1 3850 3972 -2704 2190 88 0 3 chr6 137572572 137572866 -51706688 + AluY SINE Alu 1 293 -18 8316 189 18 48 chr6 137572866 137573396 -51706158 + MER66-int LTR ERV1 3972 4415 -2261 932 275 79 15 chr6 137573401 137573758 -51705796 - LOR1-int LTR ERV1 -5 6753 6395 13055 135 16 29 chr6 137573777 137575696 -51703858 + MER66B-int LTR ERV1 4608 6405 -271 1911 144 20 52 chr6 137575696 137576042 -51703512 - MER1B DNA MER1_type -2 335 1 13055 135 16 29 chr6 137576042 137576308 -51703246 + MER66B-int LTR ERV1 6405 6673 -3 2065 185 53 32 chr6 137576315 137576790 -51702764 + MER66B LTR ERV1 1 485 -1 855 193 0 0 chr6 137576791 137576978 -51702576 + L1MA7 LINE L1 6097 6283 -8 1372 176 5 5 chr6 137576978 137577199 -51702355 + AluSx SINE Alu 8 228 -84 27 29 0 0 chr6 137577360 137577394 -51702160 + AT_rich Low_complexity Low_complexity 1 34 0 28 29 0 0 chr6 137577912 137577947 -51701607 + AT_rich Low_complexity Low_complexity 1 35 0 182 132 289 0 chr6 137578896 137578934 -51700620 - L2 LINE L2 -2 3270 3222 272 306 136 15 chr6 137579155 137579361 -51700193 + L2 LINE L2 2256 2486 -828 260 325 53 9 chr6 137581683 137581797 -51697757 - L2 LINE L2 -6 3307 3189 480 111 0 0 chr6 137582429 137582501 -51697053 + (TA)n Simple_repeat Simple_repeat 1 72 0 201 167 56 0 chr6 137582752 137582806 -51696748 + (TA)n Simple_repeat Simple_repeat 2 58 0 357 310 197 0 chr6 137583467 137583609 -51695945 - MER5A DNA MER1_type -7 182 13 2342 75 0 0 chr6 137584457 137584750 -51694804 - AluSq SINE Alu -20 293 1 212 0 36 0 chr6 137585131 137585159 -51694395 + (TAA)n Simple_repeat Simple_repeat 2 30 0 718 221 76 6 chr6 137585583 137585755 -51693799 - MER5A DNA MER1_type 0 189 6 895 318 113 34 chr6 137585784 137586313 -51693241 + L2 LINE L2 95 665 -2649 510 260 0 78 chr6 137586328 137586520 -51693034 - MER5B DNA MER1_type -1 177 1 380 363 77 21 chr6 137586520 137586856 -51692698 + L2 LINE L2 697 1051 -2263 1729 221 44 24 chr6 137586885 137587338 -51692216 - MLT1C LTR MaLR 0 467 6 512 327 163 19 chr6 137587362 137587977 -51691577 + L2 LINE L2 1144 1846 -1468 532 290 90 45 chr6 137588243 137588998 -51690556 - L1ME1 LINE L1 -237 5929 5149 248 282 58 33 chr6 137589127 137589368 -51690186 - L1ME1 LINE L1 -1133 5013 4767 273 194 32 0 chr6 137590606 137590668 -51688886 - MER103 DNA DNA -7 159 96 2083 136 48 20 chr6 137591109 137591463 -51688091 + THE1B LTR MaLR 1 364 0 883 108 22 0 chr6 137592648 137592787 -51686767 + AluSc SINE Alu 166 307 -2 203 315 14 27 chr6 137594442 137594515 -51685039 - L2 LINE L2 -1 3271 3200 501 245 0 0 chr6 137595407 137595509 -51684045 - MER5A DNA MER1_type -84 105 4 243 88 0 0 chr6 137595894 137595928 -51683626 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1488 200 36 4 chr6 137596278 137596441 -51683113 - AluJo SINE Alu -23 289 112 423 0 0 0 chr6 137596441 137596488 -51683066 + (TG)n Simple_repeat Simple_repeat 1 47 0 1488 200 36 4 chr6 137596488 137596599 -51682955 - AluJo SINE Alu -200 112 6 262 250 45 11 chr6 137597788 137597876 -51681678 - L1MD2 LINE L1 -14 6345 6255 297 0 0 0 chr6 137599944 137599977 -51679577 + (TC)n Simple_repeat Simple_repeat 1 33 0 34 65 0 0 chr6 137600335 137600397 -51679157 + AT_rich Low_complexity Low_complexity 1 62 0 251 260 52 21 chr6 137601526 137601622 -51677932 + L1ME LINE L1 5753 5851 -311 202 185 37 0 chr6 137601633 137601687 -51677867 + A-rich Low_complexity Low_complexity 3 58 0 2275 85 13 3 chr6 137603133 137603440 -51676114 + AluY SINE Alu 1 310 -1 2469 226 65 4 chr6 137604440 137604962 -51674592 + REP3 LTR ERV 9 562 0 1633 232 43 25 chr6 137605175 137605663 -51673891 - Charlie1b DNA MER1_type -16 507 11 22 56 0 0 chr6 137609880 137609916 -51669638 + AT_rich Low_complexity Low_complexity 1 36 0 2068 124 0 7 chr6 137615986 137616293 -51663261 - AluSg SINE Alu -5 305 1 270 206 0 0 chr6 137618145 137618208 -51661346 + (TA)n Simple_repeat Simple_repeat 2 64 0 22 35 0 0 chr6 137618245 137618274 -51661280 + AT_rich Low_complexity Low_complexity 1 29 0 196 333 82 29 chr6 137619390 137619597 -51659957 - L2 LINE L2 -816 2498 2281 2246 97 0 3 chr6 137619640 137619949 -51659605 - AluSc SINE Alu -1 308 1 1178 218 124 42 chr6 137620093 137620551 -51659003 + MER65C-int LTR ERV1 3377 3792 -1144 271 206 0 73 chr6 137620562 137620630 -51658924 + MER65C-int LTR ERV1 5200 5262 -1069 1413 274 41 9 chr6 137620721 137621244 -51658310 + MER65C-int LTR ERV1 3619 4173 -698 423 327 39 39 chr6 137621329 137621684 -51657870 + MER65C-int LTR ERV1 4369 4723 -148 1884 195 74 18 chr6 137621817 137622252 -51657302 + MER65C LTR ERV1 1 459 -2 246 336 62 0 chr6 137622454 137622567 -51656987 - L2 LINE L2 -1313 2001 1882 314 322 57 53 chr6 137622861 137623162 -51656392 + L2 LINE L2 1748 2049 -1265 3865 139 16 19 chr6 137623257 137623904 -51655650 - L1PA16 LINE L1 -9 6157 5513 247 353 26 17 chr6 137624832 137624948 -51654606 - MIR SINE MIR -101 161 45 14840 168 25 12 chr6 137625018 137626444 -51653110 + Tigger2 DNA MER2_type 1 1483 -1235 1855 157 38 22 chr6 137626444 137626813 -51652741 - THE1C LTR MaLR 0 375 1 14840 168 25 12 chr6 137626813 137628067 -51651487 + Tigger2 DNA MER2_type 1483 2718 0 2163 199 18 25 chr6 137628444 137629052 -51650502 - L1PA13 LINE L1 -4753 1708 1084 6029 110 10 1 chr6 137629052 137630410 -51649144 + L1PA12 LINE L1 4779 6163 -5 22 35 0 0 chr6 137630772 137630801 -51648753 + AT_rich Low_complexity Low_complexity 1 29 0 228 163 41 0 chr6 137631393 137631442 -51648112 - MER116 DNA Mariner 0 80 30 23 0 0 0 chr6 137632209 137632232 -51647322 + AT_rich Low_complexity Low_complexity 1 23 0 27 62 0 0 chr6 137632371 137632419 -51647135 + AT_rich Low_complexity Low_complexity 1 48 0 372 296 42 35 chr6 137633072 137633214 -51646340 + L2 LINE L2 3171 3313 0 409 292 35 0 chr6 137633747 137633860 -51645694 - MIR SINE MIR -90 172 56 351 260 142 8 chr6 137634435 137634562 -51644992 + MIR SINE MIR 71 214 -48 189 147 0 0 chr6 137634857 137634891 -51644663 + (TA)n Simple_repeat Simple_repeat 1 34 0 27 29 0 0 chr6 137635592 137635626 -51643928 + AT_rich Low_complexity Low_complexity 1 34 0 371 299 49 18 chr6 137635701 137635865 -51643689 + L2 LINE L2 3144 3312 -1 401 286 107 24 chr6 137635874 137636042 -51643512 - MIR SINE MIR -76 186 5 362 323 208 0 chr6 137636492 137636684 -51642870 + MIR SINE MIR 8 239 -23 23 33 0 0 chr6 137636760 137636790 -51642764 + AT_rich Low_complexity Low_complexity 1 30 0 182 114 0 29 chr6 137636899 137636934 -51642620 + (CTA)n Simple_repeat Simple_repeat 3 36 0 2127 96 11 0 chr6 137638011 137638336 -51641218 - AluY SINE Alu 0 328 1 247 324 57 19 chr6 137638351 137638456 -51641098 + L2 LINE L2 3148 3256 -16 207 179 0 0 chr6 137638773 137638812 -51640742 + (CA)n Simple_repeat Simple_repeat 2 40 0 186 43 0 0 chr6 137638815 137638838 -51640716 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr6 137639697 137639718 -51639836 + AT_rich Low_complexity Low_complexity 1 21 0 725 189 8 0 chr6 137639732 137639859 -51639695 + FLAM_A SINE Alu 1 128 -5 219 69 0 0 chr6 137639862 137639891 -51639663 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 185 189 75 19 chr6 137640618 137640671 -51638883 + MIR SINE MIR 89 144 -64 319 339 36 18 chr6 137641625 137641790 -51637764 + L2 LINE L2 2241 2408 -906 278 313 114 37 chr6 137642588 137643212 -51636342 - L1M4 LINE L1 -1311 4835 4164 244 264 213 40 chr6 137643569 137643743 -51635811 + MLT1J1 LTR MaLR 74 277 -169 261 326 43 58 chr6 137644475 137644613 -51634941 + MER5A DNA MER1_type 47 182 -7 26 30 0 0 chr6 137645539 137645572 -51633982 + AT_rich Low_complexity Low_complexity 1 33 0 432 311 89 21 chr6 137646688 137646878 -51632676 + MIR3 SINE MIR 4 206 -2 191 339 36 0 chr6 137646978 137647034 -51632520 + MER5A DNA MER1_type 49 106 -83 185 358 185 0 chr6 137651741 137651903 -51627651 + MIR SINE MIR 49 240 -22 23 33 0 0 chr6 137652071 137652101 -51627453 + AT_rich Low_complexity Low_complexity 1 30 0 239 171 66 13 chr6 137652289 137652365 -51627189 + (TA)n Simple_repeat Simple_repeat 1 80 0 204 295 39 26 chr6 137652683 137652761 -51626793 + L2 LINE L2 3220 3298 -15 25 65 0 0 chr6 137653051 137653097 -51626457 + AT_rich Low_complexity Low_complexity 1 46 0 406 230 241 23 chr6 137653441 137653615 -51625939 - MIR SINE MIR 0 262 51 904 288 54 30 chr6 137653841 137654268 -51625286 + MLT1H1 LTR MaLR 107 543 -12 2039 95 61 0 chr6 137654497 137654792 -51624762 - AluSq SINE Alu 0 313 1 207 0 0 0 chr6 137654804 137654827 -51624727 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 325 380 34 6 chr6 137654829 137655008 -51624546 - L2 LINE L2 -845 2469 2286 31 0 0 0 chr6 137656518 137656549 -51623005 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr6 137656982 137657013 -51622541 + AT_rich Low_complexity Low_complexity 1 31 0 424 262 101 13 chr6 137658075 137658224 -51621330 - MIR SINE MIR -97 165 4 183 292 0 0 chr6 137658382 137658430 -51621124 + L2 LINE L2 3266 3313 0 796 48 9 0 chr6 137659135 137659240 -51620314 + L1PA3 LINE L1 6048 6153 -2 373 218 23 0 chr6 137659240 137659321 -51620233 - L1MC2 LINE L1 -5 6339 6251 1401 207 41 20 chr6 137659321 137659676 -51619878 + MLT1A1 LTR MaLR 1 399 -10 4739 169 39 1 chr6 137659676 137660533 -51619021 - L1MC1 LINE L1 -88 6245 5357 1885 247 8 34 chr6 137660535 137661123 -51618431 - L1MC1 LINE L1 -999 5147 4575 1622 141 42 58 chr6 137661224 137661537 -51618017 - MER1B DNA MER1_type -31 308 1 220 245 138 32 chr6 137661826 137661920 -51617634 + L2 LINE L2 3169 3272 0 2212 105 3 10 chr6 137662543 137662849 -51616705 + AluSx SINE Alu 1 304 -8 895 202 97 112 chr6 137662998 137663387 -51616167 + MER57A LTR ERV1 13 403 0 196 338 89 56 chr6 137663578 137663791 -51615763 - L2 LINE L2 -669 2645 2426 21 36 0 0 chr6 137664111 137664139 -51615415 + AT_rich Low_complexity Low_complexity 1 28 0 1756 146 42 3 chr6 137665333 137665620 -51613934 - AluSx SINE Alu -9 303 6 39 68 0 0 chr6 137667382 137667456 -51612098 + AT_rich Low_complexity Low_complexity 1 74 0 263 246 18 0 chr6 137667670 137667727 -51611827 - MLT1L LTR MaLR -75 540 483 537 286 21 70 chr6 137668828 137669069 -51610485 + MIR SINE MIR 18 246 -16 2302 97 0 0 chr6 137669276 137669576 -51609978 + AluSq SINE Alu 1 300 -13 360 289 66 7 chr6 137669790 137669942 -51609612 - MER103 DNA DNA -5 161 1 299 323 63 8 chr6 137670225 137670410 -51609144 + MIR SINE MIR 2 241 -21 234 0 0 0 chr6 137670571 137670597 -51608957 + (CA)n Simple_repeat Simple_repeat 2 27 0 185 291 18 0 chr6 137671864 137671919 -51607635 + L2 LINE L2 3258 3313 0 2140 114 0 0 chr6 137671926 137672225 -51607329 - AluSg SINE Alu -11 299 1 456 260 104 47 chr6 137672840 137673032 -51606522 - MER63A DNA MER1_type -4 206 4 744 255 9 33 chr6 137673178 137673390 -51606164 - MER3 DNA MER1_type -2 207 1 25 75 0 0 chr6 137673636 137673689 -51605865 + AT_rich Low_complexity Low_complexity 1 53 0 410 344 106 18 chr6 137674766 137675039 -51604515 - L3 LINE CR1 -952 625 329 413 275 46 0 chr6 137675870 137675979 -51603575 - L2 LINE L2 0 3313 3200 362 347 150 0 chr6 137676182 137676375 -51603179 - MIR SINE MIR 0 262 41 25 31 0 0 chr6 137677516 137677548 -51602006 + AT_rich Low_complexity Low_complexity 1 32 0 2176 92 6 41 chr6 137678157 137678473 -51601081 - AluSc SINE Alu -4 305 1 2177 183 23 0 chr6 137678613 137679007 -51600547 - MER57A LTR ERV1 0 403 1 589 295 125 47 chr6 137680718 137681073 -51598481 + L2 LINE L2 2857 3252 -61 1875 165 0 16 chr6 137681073 137681388 -51598166 - AluSx SINE Alu -2 310 1 589 295 125 47 chr6 137681388 137681456 -51598098 + L2 LINE L2 3252 3313 0 249 33 0 0 chr6 137682693 137682723 -51596831 + (TG)n Simple_repeat Simple_repeat 1 30 0 1368 159 144 12 chr6 137683392 137683745 -51595809 - LTR47A LTR ERVL 0 452 1 1401 191 11 15 chr6 137683764 137684031 -51595523 - AluJo SINE Alu -14 298 33 237 365 35 0 chr6 137685074 137685159 -51594395 - L2 LINE L2 -1 3271 3184 275 269 13 13 chr6 137687623 137687701 -51591853 - L2 LINE L2 -498 2816 2739 239 250 0 0 chr6 137687708 137687764 -51591790 + MLT1J1 LTR MaLR 265 320 -126 2059 274 119 66 chr6 137687871 137688100 -51591454 - L2 LINE L2 -706 2608 2393 447 19 0 0 chr6 137688100 137688152 -51591402 + (TG)n Simple_repeat Simple_repeat 2 53 0 2059 274 119 66 chr6 137688152 137688738 -51590816 - L2 LINE L2 -921 2393 1839 352 0 42 0 chr6 137688738 137688786 -51590768 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2059 274 119 66 chr6 137688786 137689276 -51590278 - L2 LINE L2 -1475 1839 1233 253 378 92 32 chr6 137690577 137690826 -51588728 - L3 LINE CR1 -407 1170 907 346 362 83 39 chr6 137690998 137691432 -51588122 + MLT1K LTR MaLR 74 526 -62 194 274 113 65 chr6 137691503 137691627 -51587927 - L3 LINE CR1 -1085 492 363 303 321 38 0 chr6 137691717 137691823 -51587731 + L2 LINE L2 3204 3313 0 359 256 62 16 chr6 137692069 137692198 -51587356 + MIR SINE MIR 71 205 -57 5867 157 6 9 chr6 137692841 137694067 -51585487 + L1PB1 LINE L1 4556 5777 -374 231 36 0 0 chr6 137694067 137694095 -51585459 + (TG)n Simple_repeat Simple_repeat 2 29 0 5867 157 6 9 chr6 137694095 137694468 -51585086 + L1PB1 LINE L1 5777 6150 -1 2159 136 0 12 chr6 137694761 137695099 -51584455 + MER1B DNA MER1_type 4 337 0 354 23 0 0 chr6 137695583 137695626 -51583928 + (TG)n Simple_repeat Simple_repeat 2 44 0 269 329 36 14 chr6 137696140 137696280 -51583274 + L2 LINE L2 3171 3313 0 351 282 183 33 chr6 137696287 137696500 -51583054 + L2 LINE L2 2567 2811 -503 201 304 39 59 chr6 137696825 137696927 -51582627 + L2 LINE L2 3112 3211 -61 218 330 0 9 chr6 137697283 137697389 -51582165 + CT-rich Low_complexity Low_complexity 3 107 0 * 274 176 46 56 chr6 137697326 137697434 -51582120 + (TCTCTG)n Simple_repeat Simple_repeat 2 108 0 2184 85 0 0 chr6 137700092 137700427 -51579127 - AluY SINE Alu 0 335 1 368 200 131 69 chr6 137702670 137702830 -51576724 - MIR SINE MIR -7 255 86 21 0 0 0 chr6 137703700 137703721 -51575833 + AT_rich Low_complexity Low_complexity 1 21 0 256 276 0 0 chr6 137703778 137703836 -51575718 + L2 LINE L2 3202 3259 -54 189 301 54 54 chr6 137703914 137704007 -51575547 - MIR SINE MIR -72 190 98 199 273 0 0 chr6 137705167 137705222 -51574332 + L2 LINE L2 2245 2299 -1015 522 266 71 7 chr6 137705844 137705998 -51573556 + MIR SINE MIR 29 192 -70 278 322 94 18 chr6 137706639 137706810 -51572744 + MIR SINE MIR 7 190 -72 28 0 0 0 chr6 137707471 137707499 -51572055 + AT_rich Low_complexity Low_complexity 1 28 0 457 312 58 32 chr6 137707962 137708116 -51571438 - MIR3 SINE MIR -9 199 42 22 0 0 0 chr6 137708151 137708173 -51571381 + AT_rich Low_complexity Low_complexity 1 22 0 247 158 40 26 chr6 137709577 137709595 -51569959 + (TATAA)n Simple_repeat Simple_repeat 3 19 -60 1520 199 3 3 chr6 137709595 137709881 -51569673 + AluJb SINE Alu 1 286 -26 247 158 40 26 chr6 137709881 137709910 -51569644 + (TATAA)n Simple_repeat Simple_repeat 19 46 -33 2099 104 3 0 chr6 137709910 137710199 -51569355 + AluY SINE Alu 3 292 -19 247 158 40 26 chr6 137710199 137710226 -51569328 + (TATAA)n Simple_repeat Simple_repeat 46 79 0 3140 175 33 35 chr6 137712124 137712844 -51566710 + Looper DNA T2_type 95 813 -745 450 309 0 0 chr6 137712844 137712941 -51566613 - Tigger7 DNA MER2_type -1 2490 2394 * 1358 224 31 0 chr6 137712940 137713199 -51566355 - Tigger7 DNA MER2_type -466 267 1 * 1920 219 81 88 chr6 137713199 137713466 -51566088 + Looper DNA T2_type 811 1078 -480 2258 87 0 10 chr6 137713466 137713765 -51565789 + AluSc SINE Alu 3 298 -11 1920 219 81 88 chr6 137713765 137714248 -51565306 + Looper DNA T2_type 1078 1556 -2 21 0 0 0 chr6 137714969 137714990 -51564564 + AT_rich Low_complexity Low_complexity 1 21 0 1748 163 3 0 chr6 137717381 137717675 -51561879 - AluSx SINE Alu -17 295 1 3140 26 2 1 chr6 137717780 137718306 -51561248 - L1P1 LINE L1 -618 5537 5012 * 13511 29 1 0 chr6 137718302 137719911 -51559643 + L1P1 LINE L1 3412 5021 -1125 1089 85 0 0 chr6 137719911 137720052 -51559502 - AluYb8 SINE Alu -177 141 1 253 351 60 40 chr6 137720055 137720306 -51559248 + L2 LINE L2 2890 3145 -168 250 87 43 0 chr6 137720315 137720361 -51559193 + (TA)n Simple_repeat Simple_repeat 2 49 0 413 308 42 32 chr6 137720930 137720987 -51558567 - MIR SINE MIR -43 219 164 2535 30 0 10 chr6 137720987 137721286 -51558268 - AluY SINE Alu 0 311 16 413 308 42 32 chr6 137721286 137721447 -51558107 - MIR SINE MIR -98 164 5 23 0 0 0 chr6 137724211 137724234 -51555320 + AT_rich Low_complexity Low_complexity 1 23 0 396 271 236 0 chr6 137724333 137724477 -51555077 - MIR SINE MIR -23 239 62 210 191 0 0 chr6 137726149 137726196 -51553358 + (TG)n Simple_repeat Simple_repeat 2 48 0 291 104 0 0 chr6 137726612 137726660 -51552894 + (TG)n Simple_repeat Simple_repeat 2 49 0 246 32 0 0 chr6 137726661 137726692 -51552862 + (GA)n Simple_repeat Simple_repeat 2 32 0 31 58 0 0 chr6 137727007 137727059 -51552495 + AT_rich Low_complexity Low_complexity 1 52 0 1630 175 54 18 chr6 137727388 137727667 -51551887 + MER2 DNA MER2_type 1 268 -76 225 0 0 0 chr6 137727667 137727692 -51551862 + (TA)n Simple_repeat Simple_repeat 2 26 0 2073 110 0 0 chr6 137727692 137727973 -51551581 - AluSx SINE Alu -14 298 18 1630 175 54 18 chr6 137727973 137728024 -51551530 + MER2 DNA MER2_type 267 344 0 289 301 131 62 chr6 137728335 137728511 -51551043 + MER5A DNA MER1_type 1 188 -1 23 0 0 0 chr6 137731037 137731060 -51548494 + AT_rich Low_complexity Low_complexity 1 23 0 2565 60 40 3 chr6 137731793 137732142 -51547412 - L1PA7 LINE L1 -4 6150 5789 1843 59 0 8 chr6 137732142 137732379 -51547175 + L1PA7 LINE L1 5559 5793 -361 486 83 0 0 chr6 137732561 137732633 -51546921 + (TC)n Simple_repeat Simple_repeat 2 73 0 717 314 75 25 chr6 137732713 137733152 -51546402 + L2 LINE L2 1850 2310 -1004 1046 33 0 66 chr6 137733165 137733316 -51546238 + L1PA10 LINE L1 6028 6168 0 2278 68 0 0 chr6 137733328 137733636 -51545918 + AluY SINE Alu 1 308 0 254 342 83 79 chr6 137733732 137734010 -51545544 + L2 LINE L2 2566 2844 -470 2141 81 10 58 chr6 137734540 137734850 -51544704 + AluSq SINE Alu 1 295 -18 524 306 63 21 chr6 137736297 137736581 -51542973 + L1M4 LINE L1 3095 3390 -2756 2087 266 108 40 chr6 137736618 137736773 -51542781 + L1M4 LINE L1 3526 3669 -2477 414 0 0 0 chr6 137736773 137736819 -51542735 + (TA)n Simple_repeat Simple_repeat 1 46 0 2087 266 108 40 chr6 137736819 137737834 -51541720 + L1M4 LINE L1 3669 4776 -1370 374 338 99 29 chr6 137737842 137738114 -51541440 + L1M2 LINE L1 4942 5232 -914 219 139 0 0 chr6 137738114 137738150 -51541404 + (TATATG)n Simple_repeat Simple_repeat 2 37 0 452 212 100 26 chr6 137738162 137738374 -51541180 + L1M2 LINE L1 5259 5488 -708 27 49 0 0 chr6 137738386 137738427 -51541127 + AT_rich Low_complexity Low_complexity 1 41 0 557 264 50 37 chr6 137738474 137738716 -51540838 - L1MEd LINE L1 -4866 1253 1009 263 319 126 11 chr6 137738916 137739107 -51540447 - MIR SINE MIR 0 262 50 180 219 0 0 chr6 137739639 137739680 -51539874 + CT-rich Low_complexity Low_complexity 2 42 0 416 322 42 25 chr6 137739842 137740125 -51539429 - L1MC4 LINE L1 -571 7471 7184 26 50 0 0 chr6 137741503 137741543 -51538011 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr6 137741960 137741985 -51537569 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr6 137742878 137742902 -51536652 + AT_rich Low_complexity Low_complexity 1 24 0 253 330 88 33 chr6 137745409 137745591 -51533963 + MIR3 SINE MIR 10 201 -7 4089 251 51 24 chr6 137746895 137748276 -51531278 + L1MC/D LINE L1 3729 5147 -999 1289 151 124 0 chr6 137748278 137748537 -51531017 + L1MC/D LINE L1 5357 5647 -2395 458 274 121 11 chr6 137749538 137749728 -51529826 + MIR SINE MIR 47 257 -5 225 154 0 0 chr6 137750391 137750430 -51529124 + CT-rich Low_complexity Low_complexity 2 40 0 180 197 66 16 chr6 137750430 137750491 -51529063 + MER5C DNA MER1_type 50 113 -211 503 299 13 0 chr6 137751458 137751612 -51527942 + MIR SINE MIR 33 188 -74 208 211 0 0 chr6 137751612 137751650 -51527904 + (CA)n Simple_repeat Simple_repeat 2 39 0 251 336 35 52 chr6 137751788 137751904 -51527650 - L2 LINE L2 -1 3271 3158 330 275 51 65 chr6 137752010 137752148 -51527406 - MER115 DNA AcHobo -273 420 285 1485 260 104 76 chr6 137802185 137803140 -51476414 - L2 LINE L2 -717 2597 1617 180 0 0 0 chr6 137803646 137803666 -51475888 + (TA)n Simple_repeat Simple_repeat 2 21 0 342 0 0 0 chr6 137803785 137803823 -51475731 + (CA)n Simple_repeat Simple_repeat 2 39 0 648 249 58 49 chr6 137804044 137804269 -51475285 - MIR SINE MIR -35 227 1 651 292 75 8 chr6 137804390 137804630 -51474924 + MLT1L LTR MaLR 356 611 -4 180 359 0 31 chr6 137804943 137805007 -51474547 + MIR SINE MIR 10 71 -191 752 206 96 23 chr6 137805007 137805225 -51474329 - MER96B DNA MER1_type? -182 235 2 257 309 89 0 chr6 137805419 137805542 -51474012 + MIR SINE MIR 111 244 -18 2000 143 39 36 chr6 137805989 137806352 -51473202 - THE1B LTR MaLR 0 364 1 182 195 122 0 chr6 137806757 137806798 -51472756 - MIR SINE MIR -9 253 208 21 0 0 0 chr6 137808447 137808468 -51471086 + AT_rich Low_complexity Low_complexity 1 21 0 491 178 0 9 chr6 137809007 137809114 -51470440 + CT-rich Low_complexity Low_complexity 2 107 0 302 231 0 0 chr6 137809221 137809286 -51470268 + MLT1A1 LTR MaLR 3 67 -298 2649 80 97 10 chr6 137809286 137809698 -51469856 + LTR7 LTR ERV1 1 448 -2 13756 101 14 23 chr6 137809707 137812467 -51467087 + HERVH LTR ERV1 1 2984 -4729 1497 125 0 0 chr6 137812465 137812697 -51466857 + HERVH LTR ERV1 3504 3735 -3978 * 1689 159 5 5 chr6 137812707 137813013 -51466541 + HERVH LTR ERV1 3995 4288 -3425 6032 120 2 5 chr6 137813013 137813945 -51465609 + HERVH LTR ERV1 4221 5149 -2564 2578 96 48 2 chr6 137813962 137814380 -51465174 + HERVH LTR ERV1 7277 7713 0 2507 96 93 5 chr6 137814380 137814787 -51464767 + LTR7 LTR ERV1 1 443 -7 1446 175 60 3 chr6 137814801 137815086 -51464468 + MLT1A1 LTR MaLR 63 363 -2 747 193 0 0 chr6 137816241 137816376 -51463178 - AluSg/x SINE Alu -3 309 175 216 149 0 43 chr6 137817173 137817220 -51462334 - L2 LINE L2 -4 3268 3224 * 286 245 75 0 chr6 137817188 137817282 -51462272 - MIR SINE MIR -11 251 151 332 265 0 0 chr6 137817840 137817938 -51461616 - MER94 DNA DNA -36 98 1 1060 269 106 22 chr6 137817966 137818549 -51461005 + MLT2F LTR ERVL 30 661 -2 212 208 42 0 chr6 137819610 137819658 -51459896 + MER91 DNA MER1_type 41 90 -100 2278 146 16 46 chr6 137819844 137820283 -51459271 - MSTA LTR MaLR 0 428 3 9266 170 13 7 chr6 137820285 137821925 -51457629 - MSTA-int LTR MaLR 0 1651 1 2254 154 27 5 chr6 137821952 137822360 -51457194 - MSTA LTR MaLR -11 417 1 297 0 0 0 chr6 137823933 137823966 -51455588 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 384 218 153 29 chr6 137824024 137824194 -51455360 - L1ME4a LINE L1 0 6121 5931 240 315 0 0 chr6 137824381 137824470 -51455084 - L1ME4a LINE L1 -440 5681 5593 247 287 11 23 chr6 137824938 137825025 -51454529 - MIR3 SINE MIR -8 200 115 207 329 27 0 chr6 137825711 137825784 -51453770 + MIR SINE MIR 176 250 -12 393 22 0 0 chr6 137827291 137827337 -51452217 + (TA)n Simple_repeat Simple_repeat 1 46 0 194 81 27 0 chr6 137828910 137828947 -51450607 + (TTTTTA)n Simple_repeat Simple_repeat 3 40 0 853 182 23 6 chr6 137829000 137829176 -51450378 - MLT1A1 LTR MaLR -186 179 1 284 134 60 0 chr6 137829357 137829424 -51450130 + L1PA13 LINE L1 6092 6162 -1 527 198 9 9 chr6 137829527 137829638 -51449916 - MLT1A1 LTR MaLR 0 365 255 9078 152 21 16 chr6 137829648 137832125 -51447429 - L1PA14 LINE L1 -67 6094 3607 2146 137 21 32 chr6 137832125 137832504 -51447050 + THE1C LTR MaLR 1 375 0 9078 152 21 16 chr6 137832504 137832653 -51446901 - L1PA14 LINE L1 -2554 3607 3460 1173 206 87 49 chr6 137832884 137833355 -51446199 + LTR24B LTR ERV1 99 567 -9 583 254 8 0 chr6 137833381 137833511 -51446043 - FLAM_A SINE Alu -2 131 1 1538 188 8 80 chr6 137834388 137834776 -51444778 - MER4D LTR ERV1 -6 897 538 2493 85 128 5 chr6 137834778 137835177 -51444377 - LTR7 LTR ERV1 -2 448 1 1988 114 53 16 chr6 137835177 137835553 -51444001 - HERVH LTR ERV1 0 7713 7324 1221 116 34 39 chr6 137835553 137835786 -51443768 - HERVH LTR ERV1 -1894 5819 5588 * 3996 153 0 1 chr6 137835769 137836429 -51443125 - HERVH LTR ERV1 -2567 5146 4488 3290 97 4 6 chr6 137836431 137836934 -51442620 - HERVH LTR ERV1 -3720 3993 3492 819 143 27 0 chr6 137836924 137837071 -51442483 - HERVH LTR ERV1 -4423 3290 3140 * 19465 89 16 15 chr6 137837065 137840047 -51439507 - HERVH LTR ERV1 -4726 2987 1 2579 80 122 5 chr6 137840049 137840450 -51439104 - LTR7 LTR ERV1 -2 448 1 3214 137 19 6 chr6 137840451 137840985 -51438569 - MER4D LTR ERV1 -362 541 1 339 176 35 12 chr6 137841036 137841121 -51438433 - MLT1A2 LTR MaLR -2 372 286 332 194 28 93 chr6 137841129 137841237 -51438317 - MLT1A2 LTR MaLR -273 101 1 28 0 0 0 chr6 137842384 137842412 -51437142 + AT_rich Low_complexity Low_complexity 1 28 0 3025 143 33 61 chr6 137842535 137842925 -51436629 + MER1A DNA MER1_type 3 375 -2325 2177 108 3 3 chr6 137842925 137843213 -51436341 + AluSg SINE Alu 1 288 -22 3025 143 33 61 chr6 137843213 137843362 -51436192 + MER1A DNA MER1_type 375 527 0 24 0 0 0 chr6 137843426 137843450 -51436104 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 137843619 137843640 -51435914 + AT_rich Low_complexity Low_complexity 1 21 0 2341 105 0 0 chr6 137843692 137843988 -51435566 - AluSq SINE Alu -17 296 1 1635 188 157 15 chr6 137845859 137846268 -51433286 - MLT1C LTR MaLR 0 467 1 316 120 67 53 chr6 137846804 137846879 -51432675 + Tigger1 DNA MER2_type 721 796 -1622 25 51 0 0 chr6 137846923 137846962 -51432592 + AT_rich Low_complexity Low_complexity 1 39 0 13652 144 16 27 chr6 137847947 137850391 -51429163 + Tigger1 DNA MER2_type 2 2418 0 683 213 0 59 chr6 137851072 137851241 -51428313 + MER58B DNA MER1_type 183 341 0 357 345 65 69 chr6 137852293 137852525 -51427029 + L2 LINE L2 3015 3245 -27 23 33 0 0 chr6 137853359 137853389 -51426165 + AT_rich Low_complexity Low_complexity 1 30 0 386 364 12 19 chr6 137853968 137854130 -51425424 - MER91A DNA MER1_type 0 196 36 259 303 103 65 chr6 137854276 137854431 -51425123 - MIR SINE MIR -68 194 34 368 242 232 0 chr6 137854472 137854567 -51424987 - L2 LINE L2 -15 3298 3182 2660 117 17 5 chr6 137854607 137855027 -51424527 + L1PB2 LINE L1 5724 6148 -3 203 254 18 0 chr6 137855947 137856002 -51423552 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 319 330 82 0 chr6 137856002 137856099 -51423455 - L2 LINE L2 0 3272 3168 39 0 0 0 chr6 137857644 137857683 -51421871 + AT_rich Low_complexity Low_complexity 1 39 0 287 169 14 0 chr6 137857695 137857766 -51421788 + (TA)n Simple_repeat Simple_repeat 1 72 0 1478 154 99 15 chr6 137857947 137858220 -51421334 + AluSg SINE Alu 1 296 -14 23 68 0 0 chr6 137858678 137858722 -51420832 + AT_rich Low_complexity Low_complexity 1 44 0 757 157 8 15 chr6 137860297 137860431 -51419123 - FLAM_C SINE Alu 0 133 1 375 350 17 6 chr6 137860596 137860773 -51418781 + MIR SINE MIR 34 212 -50 342 316 177 34 chr6 137860989 137861333 -51418221 + L1MC4a LINE L1 5331 5763 -2045 2254 105 0 0 chr6 137861333 137861637 -51417917 + AluSx SINE Alu 1 304 -8 342 316 177 34 chr6 137861637 137861766 -51417788 + L1MC4a LINE L1 5763 5872 -1936 224 305 0 42 chr6 137862280 137862375 -51417179 + L2 LINE L2 3182 3272 0 398 301 15 15 chr6 137862873 137863006 -51416548 - L2 LINE L2 -1 3271 3139 548 259 21 7 chr6 137863343 137863486 -51416068 + MLT1E LTR MaLR 449 593 0 984 73 0 29 chr6 137864551 137864688 -51414866 + AluSq SINE Alu 1 133 -179 1343 31 0 0 chr6 137864701 137864862 -51414692 + L1PA4 LINE L1 5992 6152 -3 521 65 0 39 chr6 137864899 137864976 -51414578 + AluSq SINE Alu 129 202 -111 671 200 0 0 chr6 137865019 137865139 -51414415 - FAM SINE Alu -60 125 6 528 234 162 7 chr6 137866488 137866642 -51412912 + MER5A DNA MER1_type 9 186 -3 249 57 0 0 chr6 137866731 137866766 -51412788 + (A)n Simple_repeat Simple_repeat 1 35 0 29 47 0 0 chr6 137866906 137866949 -51412605 + AT_rich Low_complexity Low_complexity 1 43 0 44 35 0 0 chr6 137867019 137867077 -51412477 + AT_rich Low_complexity Low_complexity 1 58 0 5118 155 19 55 chr6 137867077 137867915 -51411639 + L1MA4 LINE L1 4975 5842 -458 204 40 0 0 chr6 137867915 137867940 -51411614 + (TG)n Simple_repeat Simple_repeat 2 26 0 5118 155 19 55 chr6 137867940 137867980 -51411574 + L1MA4 LINE L1 5842 5882 -418 207 0 0 0 chr6 137867980 137868003 -51411551 + (CA)n Simple_repeat Simple_repeat 2 24 0 5118 155 19 55 chr6 137868003 137868496 -51411058 + L1MA4 LINE L1 5882 6300 0 1470 179 73 0 chr6 137868511 137868784 -51410770 + AluJo SINE Alu 1 293 -19 21 57 0 0 chr6 137868901 137868936 -51410618 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr6 137870132 137870167 -51409387 + AT_rich Low_complexity Low_complexity 1 35 0 2086 114 7 0 chr6 137870180 137870479 -51409075 - AluSq SINE Alu -12 301 1 1672 234 97 4 chr6 137870585 137871047 -51408507 - MLT1D LTR MaLR 0 505 1 267 203 0 0 chr6 137871260 137871319 -51408235 + CT-rich Low_complexity Low_complexity 3 61 0 25 51 0 0 chr6 137871356 137871395 -51408159 + AT_rich Low_complexity Low_complexity 1 39 0 2059 282 78 11 chr6 137871607 137872157 -51407397 - MLT1G1 LTR MaLR -8 587 1 704 276 0 26 chr6 137872648 137872840 -51406714 - MER5A DNA MER1_type -2 187 1 310 242 61 40 chr6 137873459 137873558 -51405996 + L2 LINE L2 3206 3306 -7 484 241 54 12 chr6 137873985 137874151 -51405403 + L1ME3A LINE L1 5764 5936 -234 378 217 0 0 chr6 137874412 137874481 -51405073 + Tigger2 DNA MER2_type 1 69 -2649 * 2279 156 32 25 chr6 137874479 137874757 -51404797 + Tigger2 DNA MER2_type 2280 2564 -154 333 82 0 0 chr6 137874757 137874806 -51404748 + (CA)n Simple_repeat Simple_repeat 2 50 0 2279 156 32 25 chr6 137874806 137874963 -51404591 + Tigger2 DNA MER2_type 2564 2718 0 24 67 0 0 chr6 137874994 137875039 -51404515 + AT_rich Low_complexity Low_complexity 1 45 0 191 309 107 0 chr6 137876486 137876570 -51402984 + L2 LINE L2 3204 3296 -17 13635 125 37 58 chr6 137877734 137877918 -51401636 - Tigger1 DNA MER2_type -1 2417 2231 1843 97 25 0 chr6 137877918 137878196 -51401358 + L1MA3 LINE L1 6021 6305 0 13635 125 37 58 chr6 137878196 137878642 -51400912 - Tigger1 DNA MER2_type -187 2231 1777 1590 163 51 3 chr6 137878642 137878937 -51400617 + AluSx SINE Alu 1 309 -3 13635 125 37 58 chr6 137878937 137879337 -51400217 - Tigger1 DNA MER2_type -641 1777 1370 2092 102 3 3 chr6 137879337 137879671 -51399883 - AluSq SINE Alu 0 334 1 13635 125 37 58 chr6 137879671 137881106 -51398448 - Tigger1 DNA MER2_type -1048 1370 1 1238 228 86 31 chr6 137884192 137884715 -51394839 - L1MC5 LINE L1 -65 7896 7345 184 149 43 0 chr6 137884725 137884772 -51394782 + CT-rich Low_complexity Low_complexity 4 52 0 268 289 93 10 chr6 137884967 137885064 -51394490 - L3 LINE CR1 -418 1159 1055 581 288 68 14 chr6 137885829 137886051 -51393503 + MIR SINE MIR 29 262 0 239 340 33 40 chr6 137886292 137886442 -51393112 + MIR3 SINE MIR 24 172 -36 1408 209 6 35 chr6 137886593 137886908 -51392646 + AluJo SINE Alu 3 308 -4 264 30 0 0 chr6 137887766 137887799 -51391755 + (CA)n Simple_repeat Simple_repeat 2 34 0 483 304 37 0 chr6 137887835 137887996 -51391558 + MIR SINE MIR 86 252 -10 31 0 0 0 chr6 137892130 137892161 -51387393 + AT_rich Low_complexity Low_complexity 1 31 0 23 92 0 0 chr6 137893633 137893698 -51385856 + AT_rich Low_complexity Low_complexity 1 65 0 265 414 83 23 chr6 137893842 137894144 -51385410 - L2 LINE L2 -9 3263 2944 253 357 70 7 chr6 137894234 137894377 -51385177 - L2 LINE L2 -467 2847 2696 249 363 68 50 chr6 137894377 137894978 -51384576 - L2 LINE L2 -1389 1925 1314 403 306 151 29 chr6 137895383 137895628 -51383926 - MLT1J1 LTR MaLR -92 354 80 303 343 9 0 chr6 137897062 137897167 -51382387 - MER117 DNA MER1_type -43 154 49 23 68 0 0 chr6 137897577 137897621 -51381933 + AT_rich Low_complexity Low_complexity 1 44 0 199 374 57 16 chr6 137897702 137897825 -51381729 - MIR3 SINE MIR -32 176 49 2199 142 52 38 chr6 137898417 137898629 -51380925 - Tigger2a DNA MER2_type -2278 430 222 2033 118 3 14 chr6 137898629 137898926 -51380628 + AluSg SINE Alu 1 294 -16 2199 142 52 38 chr6 137898926 137899137 -51380417 - Tigger2a DNA MER2_type -2486 222 1 283 333 187 23 chr6 137899583 137899608 -51379946 + L2 LINE L2 260 280 -3034 2342 142 14 3 chr6 137899608 137899968 -51379586 - THE1B LTR MaLR 0 364 1 283 333 187 23 chr6 137899968 137900284 -51379270 + L2 LINE L2 280 657 -2657 276 125 71 18 chr6 137900298 137900354 -51379200 - MER96B DNA MER1_type? -167 250 192 1479 166 127 27 chr6 137900393 137900725 -51378829 - MLT1A1 LTR MaLR 0 365 1 185 289 13 92 chr6 137901039 137901115 -51378439 + L2 LINE L2 3199 3268 -45 1654 202 41 68 chr6 137901787 137902389 -51377165 + L1MA9 LINE L1 5726 6275 -25 345 301 72 97 chr6 137902508 137902787 -51376767 + L1ME3A LINE L1 993 1264 -5266 298 235 67 42 chr6 137902787 137902906 -51376648 + L1M3d LINE L1 1301 1680 -4781 870 292 106 33 chr6 137903040 137904575 -51374979 + L1ME3A LINE L1 1564 3244 -3296 2467 162 12 14 chr6 137904575 137905002 -51374552 + MSTA LTR MaLR 3 428 0 870 292 106 33 chr6 137905002 137905016 -51374538 + L1ME3A LINE L1 3244 3256 -3284 * 976 329 55 21 chr6 137905012 137905865 -51373689 + L1ME3A LINE L1 3803 4684 -1856 862 243 46 39 chr6 137905907 137906191 -51373363 + L1ME3A LINE L1 6022 6307 -257 305 183 133 83 chr6 137906343 137906463 -51373091 + L1ME3A LINE L1 6393 6518 -38 563 230 39 28 chr6 137906583 137906761 -51372793 - MER96B DNA MER1_type? -1 416 237 825 244 34 14 chr6 137906765 137906974 -51372580 - MIR SINE MIR -36 226 14 294 289 132 8 chr6 137909200 137909321 -51370233 - L2 LINE L2 -1 3271 3136 391 330 155 19 chr6 137909580 137910111 -51369443 + L2 LINE L2 2712 3307 -6 2330 107 0 0 chr6 137910474 137910774 -51368780 + AluSq SINE Alu 1 300 -13 624 337 122 38 chr6 137910845 137911964 -51367590 - L2 LINE L2 -661 2653 1441 1550 290 88 15 chr6 137912272 137912921 -51366633 + L2 LINE L2 1816 2511 -803 3365 191 62 26 chr6 137912926 137913684 -51365870 - LTR1 LTR ERV1 0 785 1 799 333 67 39 chr6 137913710 137913867 -51365687 + L2 LINE L2 2534 2685 -628 1918 159 3 3 chr6 137913867 137914176 -51365378 - AluSx SINE Alu -3 309 1 799 333 67 39 chr6 137914176 137914500 -51365054 + L2 LINE L2 2685 3030 -283 245 230 143 85 chr6 137914526 137914743 -51364811 + MLT1H LTR MaLR 8 208 -201 379 339 88 8 chr6 137914966 137915205 -51364349 + L2 LINE L2 3056 3313 0 2390 116 11 19 chr6 137916904 137917282 -51362272 + THE1C LTR MaLR 1 375 0 26 0 0 0 chr6 137917361 137917387 -51362167 + AT_rich Low_complexity Low_complexity 1 26 0 2436 230 24 112 chr6 137918491 137918514 -51361040 - MER21B LTR ERV1 -79 784 761 2536 96 11 11 chr6 137918514 137918878 -51360676 - THE1B LTR MaLR 0 364 1 2436 230 24 112 chr6 137918878 137919477 -51360077 - MER21B LTR ERV1 -102 761 254 2341 98 0 0 chr6 137919477 137919774 -51359780 - AluSc SINE Alu -12 297 1 2436 230 24 112 chr6 137919774 137919998 -51359556 - MER21B LTR ERV1 -609 254 12 1031 203 106 114 chr6 137920259 137920446 -51359108 + LTR54 LTR ERV1 2 189 -321 2018 119 20 0 chr6 137920446 137920739 -51358815 - AluSx SINE Alu -13 299 1 1031 203 106 114 chr6 137920739 137921044 -51358510 + LTR54 LTR ERV1 189 490 -20 3624 142 20 28 chr6 137921308 137921948 -51357606 - MER41B LTR ERV1 0 635 1 342 296 101 49 chr6 137921994 137922055 -51357499 + L1ME4a LINE L1 5816 5872 -249 2009 139 7 23 chr6 137922055 137922364 -51357190 + AluSx SINE Alu 1 304 -8 342 296 101 49 chr6 137922364 137922589 -51356965 + L1ME4a LINE L1 5872 6117 -4 22 0 0 0 chr6 137922863 137922885 -51356669 + AT_rich Low_complexity Low_complexity 1 22 0 725 276 98 9 chr6 137923811 137924036 -51355518 + MIR SINE MIR 16 260 -2 25 31 0 0 chr6 137924175 137924207 -51355347 + AT_rich Low_complexity Low_complexity 1 32 0 275 252 96 0 chr6 137924249 137924364 -51355190 - L1ME4a LINE L1 -5 6116 5991 554 171 0 0 chr6 137924628 137924716 -51354838 + FLAM_A SINE Alu 35 122 -20 27 29 0 0 chr6 137925178 137925212 -51354342 + AT_rich Low_complexity Low_complexity 1 34 0 3026 164 52 9 chr6 137925246 137925781 -51353773 - MER6A DNA MER2_type -3 602 45 315 178 0 68 chr6 137925789 137925862 -51353692 - MER6A DNA MER2_type -538 67 0 1930 216 46 24 chr6 137925881 137926340 -51353214 - MLT1D LTR MaLR -32 473 5 1990 151 33 36 chr6 137926340 137926705 -51352849 - THE1B LTR MaLR 0 364 1 11718 94 3 5 chr6 137926705 137928286 -51351268 - THE1B-int LTR MaLR 0 1580 3 2058 137 36 39 chr6 137928289 137928653 -51350901 - THE1B LTR MaLR -1 363 1 397 239 17 8 chr6 137931218 137931335 -51348219 + L1MB8 LINE L1 6059 6176 -2 739 258 22 0 chr6 137931527 137931705 -51347849 - MIR SINE MIR 0 262 81 186 368 29 0 chr6 137931761 137931829 -51347725 - MIR SINE MIR -183 79 10 849 271 143 37 chr6 137931829 137932235 -51347319 - MLT1J2 LTR MaLR 0 450 2 189 0 0 0 chr6 137933833 137933854 -51345700 + (CA)n Simple_repeat Simple_repeat 2 22 0 333 62 0 0 chr6 137934044 137934092 -51345462 + (TA)n Simple_repeat Simple_repeat 2 49 0 422 309 73 0 chr6 137935102 137935238 -51344316 + MIR SINE MIR 28 173 -89 633 265 41 12 chr6 137935783 137935953 -51343601 - MER69A DNA AcHobo -2 175 1 278 222 48 119 chr6 137936020 137936146 -51343408 + MIR SINE MIR 37 153 -109 2012 134 0 7 chr6 137936237 137936536 -51343018 - AluSx SINE Alu -15 297 1 198 360 27 18 chr6 137936574 137936685 -51342869 - MIR SINE MIR -148 114 3 29 28 0 0 chr6 137937065 137937101 -51342453 + AT_rich Low_complexity Low_complexity 1 36 0 578 281 12 98 chr6 137937604 137937850 -51341704 + MIR SINE MIR 23 247 -15 426 239 92 0 chr6 137938010 137938119 -51341435 - MER69A DNA AcHobo -58 119 1 2033 234 153 20 chr6 137938735 137939882 -51339672 + L1ME1 LINE L1 4695 5994 -172 476 222 17 0 chr6 137939903 137940020 -51339534 + L1MA10 LINE L1 6216 6334 0 40 59 0 0 chr6 137940872 137940940 -51338614 + AT_rich Low_complexity Low_complexity 1 68 0 1789 107 33 0 chr6 137940947 137941219 -51338335 + L1PA13 LINE L1 5883 6163 0 209 189 0 0 chr6 137941616 137941653 -51337901 + (CA)n Simple_repeat Simple_repeat 2 38 0 191 330 125 0 chr6 137942175 137942287 -51337267 + MIR SINE MIR 81 206 -56 562 255 207 0 chr6 137942591 137942799 -51336755 + MIR SINE MIR 12 262 0 492 314 95 27 chr6 137943230 137943526 -51336028 + L2 LINE L2 2465 2780 -534 571 333 128 10 chr6 137943542 137943854 -51335700 + L2 LINE L2 2921 3269 -44 2179 51 65 4 chr6 137943975 137944250 -51335304 - AluY SINE Alu -19 292 1 246 271 0 0 chr6 137944646 137944742 -51334812 + (TA)n Simple_repeat Simple_repeat 1 96 0 21 0 0 0 chr6 137944746 137944767 -51334787 + AT_rich Low_complexity Low_complexity 1 21 0 1437 167 96 25 chr6 137945037 137945318 -51334236 - AluSg SINE Alu -9 301 1 914 208 30 0 chr6 137945370 137945538 -51334016 - FAM SINE Alu -2 173 1 22 35 0 0 chr6 137945628 137945657 -51333897 + AT_rich Low_complexity Low_complexity 1 29 0 249 357 123 0 chr6 137946905 137947059 -51332495 - MIR SINE MIR -70 192 20 201 266 117 43 chr6 137947160 137947254 -51332300 - L2 LINE L2 -2088 1226 1126 1343 198 186 14 chr6 137948568 137948992 -51330562 - LTR54B LTR ERV1 -1 497 1 234 206 79 16 chr6 137948998 137949022 -51330532 + MER5A DNA MER1_type 43 64 -125 312 70 0 0 chr6 137949022 137949065 -51330489 + (CA)n Simple_repeat Simple_repeat 2 44 0 234 206 79 16 chr6 137949065 137949103 -51330451 + MER5A DNA MER1_type 64 109 -80 253 307 33 67 chr6 137949407 137949557 -51329997 - MER5A DNA MER1_type -2 187 43 372 97 16 32 chr6 137949805 137949867 -51329687 - MSTA LTR MaLR -2 426 366 2491 181 2 2 chr6 137951425 137951828 -51327726 - MLT2B3 LTR ERVL -151 403 1 2427 101 0 0 chr6 137952216 137952524 -51327030 - AluSx SINE Alu -4 308 1 2163 131 0 0 chr6 137953666 137953972 -51325582 - AluSx SINE Alu -6 306 1 208 147 0 0 chr6 137954537 137954571 -51324983 + (TATAA)n Simple_repeat Simple_repeat 1 34 0 1780 170 14 3 chr6 137954576 137954864 -51324690 + AluJo SINE Alu 4 294 -18 950 217 51 125 chr6 137955731 137956122 -51323432 - MLT1A2 LTR MaLR 0 374 13 1503 178 125 0 chr6 137956401 137956722 -51322832 + MER46B DNA MER2_type 1 236 0 522 289 91 45 chr6 137957095 137957382 -51322172 - LTR16B LTR ERVL -160 304 5 603 353 16 34 chr6 137957493 137957935 -51321619 - ERVL LTR ERVL -384 5380 4947 22 0 0 0 chr6 137959566 137959588 -51319966 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr6 137959879 137959921 -51319633 + AT_rich Low_complexity Low_complexity 1 42 0 293 168 32 44 chr6 137962935 137963214 -51316340 + AluJo SINE Alu 1 302 0 1039 289 36 21 chr6 137963557 137963889 -51315665 + LTR16A LTR ERVL 108 444 -6 409 301 104 6 chr6 137964118 137964281 -51315273 + HERV16 LTR ERVL 270 448 -4548 1378 319 22 28 chr6 137964440 137964986 -51314568 + HERV16 LTR ERVL 856 1399 -3597 584 67 0 22 chr6 137964986 137965076 -51314478 + L1PA4 LINE L1 6068 6155 0 1378 319 22 28 chr6 137965076 137965128 -51314426 + HERV16 LTR ERVL 1399 1450 -3546 1940 326 54 33 chr6 137965344 137965613 -51313941 + HERV16 LTR ERVL 2053 2315 -3026 860 257 46 18 chr6 137965613 137965831 -51313723 + MER58A DNA MER1_type 1 224 0 1940 326 54 33 chr6 137965831 137966493 -51313061 + HERV16 LTR ERVL 2315 2961 -2380 1752 96 0 13 chr6 137966493 137966732 -51312822 - AluSg/x SINE Alu -6 306 71 1940 326 54 33 chr6 137966732 137966995 -51312559 + HERV16 LTR ERVL 2961 3319 -2022 3853 123 25 17 chr6 137966995 137967639 -51311915 + MER39B LTR ERV1 3 651 -2 1940 326 54 33 chr6 137967639 137967668 -51311886 + HERV16 LTR ERVL 3319 3346 -1995 720 279 74 82 chr6 137968848 137969322 -51310232 - MLT1H1 LTR MaLR 0 555 86 307 206 199 8 chr6 137969914 137970094 -51309460 + MER106B DNA MER1_type 6 1054 -5 1928 259 23 7 chr6 137970304 137970867 -51308687 - L1M4 LINE L1 -837 5309 4738 778 244 62 41 chr6 137970867 137971192 -51308362 - MLT1A1 LTR MaLR 0 396 1 1507 271 21 10 chr6 137971193 137971709 -51307845 - L1M4 LINE L1 -1405 4741 4220 1330 250 136 60 chr6 137971709 137972597 -51306957 + LTR1B LTR ERV1 1 1020 0 2097 284 29 16 chr6 137972597 137973418 -51306136 - L1M4 LINE L1 -1923 4223 3392 1638 357 40 36 chr6 137973659 137974893 -51304661 + HERV16 LTR ERVL 4146 5383 -381 555 238 181 52 chr6 137975015 137975418 -51304136 + LTR16A1 LTR ERVL 1 455 -2 1345 133 0 0 chr6 137975880 137976075 -51303479 - AluJb SINE Alu -13 299 105 207 301 90 48 chr6 137976710 137976876 -51302678 + MIR SINE MIR 36 208 -54 6142 164 22 21 chr6 137977494 137978740 -51300814 - L1 LINE L1 -1126 5020 3773 885 110 11 22 chr6 137978753 137978935 -51300619 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1487 196 4 14 chr6 137978935 137979215 -51300339 - AluJo SINE Alu -33 279 3 295 270 47 28 chr6 137979378 137979433 -51300121 + L1ME4a LINE L1 5706 5758 -363 2130 157 71 12 chr6 137979433 137979580 -51299974 + MER65A LTR ERV1 1 138 -307 261 0 0 0 chr6 137979580 137979609 -51299945 + (CA)n Simple_repeat Simple_repeat 2 30 0 2130 157 71 12 chr6 137979609 137979881 -51299673 + MER65A LTR ERV1 138 445 0 295 270 47 28 chr6 137979881 137980036 -51299518 + L1ME4a LINE L1 5758 5920 -201 277 188 0 0 chr6 137981123 137981171 -51298383 + LTR33A LTR ERVL 473 520 -3 424 244 6 6 chr6 137981331 137981491 -51298063 + (TA)n Simple_repeat Simple_repeat 1 160 0 2351 52 0 23 chr6 137981906 137982211 -51297343 + AluY SINE Alu 1 298 -13 2440 54 0 0 chr6 137982368 137982665 -51296889 + AluY SINE Alu 1 297 -14 1932 142 3 3 chr6 137982947 137983250 -51296304 - AluSq SINE Alu -4 309 7 693 296 164 14 chr6 137983500 137983787 -51295767 + L2 LINE L2 2647 2976 -338 1049 208 43 13 chr6 137983798 137984029 -51295525 - MLT1F LTR MaLR -12 530 293 1993 140 16 0 chr6 137984068 137984375 -51295179 + AluSx SINE Alu 1 312 0 706 230 73 38 chr6 137985218 137985587 -51293967 + L1ME LINE L1 4300 4681 -1465 622 177 17 23 chr6 137985848 137986023 -51293531 + GA-rich Low_complexity Low_complexity 3 176 0 31 0 0 0 chr6 137986098 137986129 -51293425 + AT_rich Low_complexity Low_complexity 1 31 0 408 270 101 6 chr6 137986316 137986494 -51293060 + L1ME LINE L1 5267 5461 -709 985 264 33 7 chr6 137986650 137986926 -51292628 + MER93a LTR ERV1 120 402 0 460 320 59 18 chr6 137986944 137987290 -51292264 + L1ME LINE L1 5485 5848 -273 2013 130 0 10 chr6 137987401 137987701 -51291853 + AluSx SINE Alu 1 297 -15 2511 97 40 0 chr6 137987745 137988095 -51291459 + THE1B LTR MaLR 1 364 0 4883 167 37 7 chr6 137988194 137989489 -51290065 + L1PB4 LINE L1 4819 6156 0 285 29 0 0 chr6 137989620 137989654 -51289900 + (CA)n Simple_repeat Simple_repeat 2 35 0 2521 188 27 39 chr6 137990305 137990428 -51289126 - L1MC3 LINE L1 -7 7778 7655 1982 137 3 3 chr6 137990428 137990721 -51288833 - AluSx SINE Alu -17 295 3 2521 188 27 39 chr6 137990721 137991192 -51288362 - L1MC3 LINE L1 -130 7655 7191 242 232 43 29 chr6 137991192 137991261 -51288293 - MLT1F1 LTR MaLR -456 111 42 546 127 136 0 chr6 137991264 137991382 -51288172 - L1MC3 LINE L1 -685 7100 6967 1783 192 14 24 chr6 137991382 137991751 -51287803 + MLT1A1 LTR MaLR 1 365 0 633 209 23 37 chr6 137991779 137991994 -51287560 + HAL1 LINE L1 984 1195 -1312 777 136 34 0 chr6 137992068 137992186 -51287368 + MLT1A1 LTR MaLR 244 365 0 7542 187 34 50 chr6 137992186 137993092 -51286462 - L1MC3 LINE L1 -743 5403 6110 544 100 0 0 chr6 137993092 137993172 -51286382 + MADE1 DNA Mariner 1 80 0 7542 187 34 50 chr6 137993172 137994291 -51285263 - L1MC3 LINE L1 -35 6111 4976 393 39 0 0 chr6 137994325 137994376 -51285178 + (TG)n Simple_repeat Simple_repeat 2 52 0 655 269 75 40 chr6 137996221 137996422 -51283132 - MIR SINE MIR -11 251 44 238 267 133 48 chr6 137996468 137996573 -51282981 - MIR SINE MIR -108 154 41 664 220 0 0 chr6 137997243 137997361 -51282193 + FLAM_A SINE Alu 1 118 -15 276 200 0 0 chr6 137997361 137997421 -51282133 + (TA)n Simple_repeat Simple_repeat 1 60 0 26 30 0 0 chr6 137997837 137997870 -51281684 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr6 137999043 137999071 -51280483 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 137999595 137999619 -51279935 + AT_rich Low_complexity Low_complexity 1 24 0 414 57 0 0 chr6 138000974 138001027 -51278527 + (TG)n Simple_repeat Simple_repeat 2 54 0 1827 95 76 0 chr6 138001223 138001506 -51278048 + AluSp SINE Alu 1 303 0 571 284 52 19 chr6 138001509 138001720 -51277834 - L2 LINE L2 0 3313 3096 407 302 244 5 chr6 138002564 138002769 -51276785 - MIR SINE MIR 0 262 9 30 27 0 0 chr6 138002884 138002921 -51276633 + AT_rich Low_complexity Low_complexity 1 37 0 262 236 42 0 chr6 138002959 138003031 -51276523 + CT-rich Low_complexity Low_complexity 4 78 0 424 293 119 45 chr6 138003372 138003457 -51276097 - L2 LINE L2 0 3313 3236 1260 133 9 26 chr6 138003457 138003690 -51275864 + L1MA4 LINE L1 6061 6289 -11 424 293 119 45 chr6 138003690 138003915 -51275639 - L2 LINE L2 -77 3236 2980 323 146 18 0 chr6 138003926 138003981 -51275573 - MER58 DNA MER1_type -9 2411 2356 521 219 0 42 chr6 138004126 138004245 -51275309 - MER5B DNA MER1_type 0 178 65 340 232 85 0 chr6 138004248 138004330 -51275224 + MER81 DNA DNA 1 89 -25 569 282 53 31 chr6 138004390 138004617 -51274937 - L2 LINE L2 -519 2795 2564 1342 207 49 68 chr6 138004622 138004777 -51274777 + MLT1A2 LTR MaLR 15 171 -203 222 37 0 0 chr6 138004777 138004804 -51274750 + (TC)n Simple_repeat Simple_repeat 2 28 0 1342 207 49 68 chr6 138004804 138005015 -51274539 + MLT1A2 LTR MaLR 171 374 0 495 329 153 26 chr6 138005015 138005513 -51274041 - L2 LINE L2 -747 2567 2007 2232 61 0 79 chr6 138005639 138005969 -51273585 - AluY SINE Alu -7 304 1 3662 226 64 21 chr6 138006031 138008101 -51271453 - L1MD2 LINE L1 -92 6527 4380 1779 192 20 44 chr6 138008108 138008498 -51271056 - MLT1B LTR MaLR -9 381 1 4732 239 56 27 chr6 138008498 138009273 -51270281 - L1MD2 LINE L1 -2022 4384 3633 1396 206 25 3 chr6 138009273 138009555 -51269999 - AluJb SINE Alu -24 288 1 4732 239 56 27 chr6 138009555 138012419 -51267135 - L1MD2 LINE L1 -2773 3633 660 217 209 169 61 chr6 138012809 138012957 -51266597 - L2 LINE L2 -109 3204 3041 2171 112 26 52 chr6 138012992 138013034 -51266520 - THE1C LTR MaLR 0 375 333 2719 22 0 3 chr6 138013034 138013345 -51266209 + AluY SINE Alu 1 310 -1 2171 112 26 52 chr6 138013345 138013687 -51265867 - THE1C LTR MaLR -42 333 1 192 195 24 0 chr6 138013687 138013728 -51265826 - L2 LINE L2 -362 2910 2869 1713 175 3 7 chr6 138014305 138014590 -51264964 + AluJo SINE Alu 5 288 -24 447 298 183 10 chr6 138014713 138014921 -51264633 - MIR SINE MIR -14 248 5 21 0 0 0 chr6 138015001 138015022 -51264532 + AT_rich Low_complexity Low_complexity 1 21 0 180 315 69 82 chr6 138015030 138015262 -51264292 - L2 LINE L2 -178 3094 2866 188 388 16 16 chr6 138015608 138015729 -51263825 + MIR SINE MIR 12 132 -130 395 353 8 0 chr6 138015818 138015940 -51263614 + L2 LINE L2 2585 2707 -607 635 310 185 26 chr6 138015975 138016781 -51262773 - L2 LINE L2 -631 2683 1750 636 218 61 0 chr6 138017161 138017326 -51262228 - MER96B DNA MER1_type? -241 176 2 1702 135 82 0 chr6 138017899 138018180 -51261374 - AluSx SINE Alu -8 304 1 29 0 0 0 chr6 138018531 138018560 -51260994 + AT_rich Low_complexity Low_complexity 1 29 0 716 254 47 4 chr6 138019159 138019415 -51260139 + Charlie1 DNA MER1_type 2344 2610 -151 226 101 58 29 chr6 138019399 138019468 -51260086 + Charlie1 DNA MER1_type 2547 2617 -144 * 1740 180 42 38 chr6 138019470 138020014 -51259540 - MLT2A2 LTR ERVL 0 554 3 456 168 160 0 chr6 138020021 138020140 -51259414 + Charlie1 DNA MER1_type 2616 2753 -8 1808 190 0 3 chr6 138020141 138020451 -51259103 + AluJb SINE Alu 3 311 -1 800 290 26 54 chr6 138022227 138022655 -51256899 - LTR16A LTR ERVL -13 437 22 1839 191 100 123 chr6 138022782 138023524 -51256030 - LTR8A LTR ERV1 -2 725 1 1404 189 0 4 chr6 138023678 138023943 -51255611 + MER49 LTR ERV1 15 278 -645 1457 223 19 21 chr6 138023963 138024340 -51255214 + MER4D LTR ERV1 528 903 0 1469 127 207 13 chr6 138024344 138024658 -51254896 + THE1C LTR MaLR 1 375 0 641 352 63 26 chr6 138024724 138025374 -51254180 - ERVL LTR ERVL -573 5191 4518 1000 120 0 0 chr6 138025408 138025541 -51254013 + AluSq/x SINE Alu 1 133 -180 750 341 46 19 chr6 138025603 138026034 -51253520 - ERVL LTR ERVL -1330 4324 3882 234 0 0 0 chr6 138026084 138026110 -51253444 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1271 351 26 35 chr6 138026110 138027082 -51252472 - ERVL LTR ERVL -1855 3799 2837 2032 297 103 45 chr6 138027124 138028428 -51251126 + L2 LINE L2 1938 3313 0 556 307 71 9 chr6 138029049 138029274 -51250280 - MIR SINE MIR -17 245 7 1928 153 12 24 chr6 138029528 138029869 -51249685 + MER2 DNA MER2_type 1 337 -8 542 204 18 9 chr6 138030821 138030934 -51248620 - FLAM_A SINE Alu -18 115 2 238 62 0 0 chr6 138031247 138031279 -51248275 + (TG)n Simple_repeat Simple_repeat 1 32 0 374 110 27 0 chr6 138031279 138031352 -51248202 + (TCTG)n Simple_repeat Simple_repeat 4 78 0 1172 305 85 11 chr6 138031362 138031798 -51247756 + L2 LINE L2 1853 2320 -994 275 273 15 0 chr6 138031812 138031878 -51247676 + L2 LINE L2 3247 3313 0 203 250 0 0 chr6 138033365 138033413 -51246141 + (TG)n Simple_repeat Simple_repeat 2 49 0 195 271 56 65 chr6 138033559 138033666 -51245888 - L2 LINE L2 -1130 2184 2079 372 202 34 11 chr6 138033803 138033892 -51245662 + MER94 DNA DNA 3 93 -41 378 332 168 5 chr6 138034232 138034422 -51245132 + MIR SINE MIR 23 243 -19 735 324 81 66 chr6 138034503 138035540 -51244014 + L2 LINE L2 2244 3296 -17 1264 150 0 93 chr6 138035870 138036116 -51243438 - AluJo SINE Alu -6 306 84 456 328 32 26 chr6 138038474 138038663 -51240891 - MIR SINE MIR -51 211 22 587 307 45 5 chr6 138038726 138038928 -51240626 + MIR SINE MIR 48 257 -5 21 0 0 0 chr6 138039076 138039097 -51240457 + AT_rich Low_complexity Low_complexity 1 21 0 1388 217 14 25 chr6 138039104 138039380 -51240174 + AluJo SINE Alu 1 273 -39 867 146 51 6 chr6 138039737 138039895 -51239659 - MSTA LTR MaLR -49 379 215 209 56 0 28 chr6 138040103 138040139 -51239415 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 411 216 26 17 chr6 138040759 138040875 -51238679 + LTR34 LTR ERV1 1 117 -547 1051 202 49 117 chr6 138040953 138041449 -51238105 + LTR34 LTR ERV1 136 695 -4 243 327 151 6 chr6 138041866 138042025 -51237529 + L2 LINE L2 2717 2898 -416 1958 248 72 7 chr6 138043993 138044538 -51235016 + MLT1G LTR MaLR 10 589 -1 26 0 0 0 chr6 138044695 138044721 -51234833 + AT_rich Low_complexity Low_complexity 1 26 0 264 275 28 18 chr6 138045367 138045476 -51234078 + L1ME4a LINE L1 5584 5693 -428 1324 233 109 48 chr6 138045521 138045997 -51233557 - MLT1D LTR MaLR 0 505 1 1843 73 71 14 chr6 138046128 138046446 -51233108 + MLT2A1 LTR ERVL 1 399 -45 453 189 0 0 chr6 138046451 138046541 -51233013 + (TA)n Simple_repeat Simple_repeat 2 91 0 241 289 0 0 chr6 138046541 138046631 -51232923 + L1MC4 LINE L1 6614 6703 -1339 289 132 0 0 chr6 138046644 138046697 -51232857 + MLT2A1 LTR ERVL 392 444 0 4729 70 3 0 chr6 138046697 138047324 -51232230 + HERVL-A1-A1 LTR ERVL 1 629 -5025 32783 78 15 1 chr6 138047332 138051345 -51228209 + HERVL-A1-A1 LTR ERVL 1154 5239 -415 288 53 0 0 chr6 138051345 138051383 -51228171 + (CA)n Simple_repeat Simple_repeat 2 39 0 32783 78 15 1 chr6 138051383 138051806 -51227748 + HERVL-A1-A1 LTR ERVL 5239 5654 0 2984 82 0 0 chr6 138051806 138052210 -51227344 + MLT2A1 LTR ERVL 1 404 -40 292 75 19 19 chr6 138052210 138052263 -51227291 + (TA)n Simple_repeat Simple_repeat 1 53 0 292 88 59 88 chr6 138052263 138052331 -51227223 + MLT2A1 LTR ERVL 379 444 0 684 277 35 20 chr6 138052331 138052533 -51227021 - MIR SINE MIR -40 222 18 304 330 0 9 chr6 138052533 138052645 -51226909 + L1ME4a LINE L1 5836 5946 -175 624 81 0 0 chr6 138052823 138052909 -51226645 + L1MA3 LINE L1 6214 6299 -6 341 346 73 30 chr6 138053636 138053870 -51225684 + MIR SINE MIR 3 246 -16 1161 238 43 10 chr6 138053941 138054243 -51225311 - LTR16C LTR ERVL 0 491 180 411 293 105 91 chr6 138056046 138056650 -51222904 - L1M2 LINE L1 -5897 952 588 186 43 0 0 chr6 138056650 138056673 -51222881 + (CCG)n Simple_repeat Simple_repeat 3 25 0 411 293 105 91 chr6 138056673 138056864 -51222690 - L1M2 LINE L1 -6261 588 401 22 35 0 0 chr6 138061541 138061570 -51217984 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 138062383 138062411 -51217143 + AT_rich Low_complexity Low_complexity 1 28 0 501 321 72 24 chr6 138063530 138063779 -51215775 - MIR SINE MIR 0 262 2 22 35 0 0 chr6 138064139 138064168 -51215386 + AT_rich Low_complexity Low_complexity 1 29 0 224 122 24 0 chr6 138064218 138064259 -51215295 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 867 219 28 6 chr6 138064388 138064566 -51214988 - MER5A DNA MER1_type -7 182 1 246 62 0 0 chr6 138064940 138064972 -51214582 + (GA)n Simple_repeat Simple_repeat 1 32 0 206 272 69 14 chr6 138065045 138065123 -51214431 + MIR SINE MIR 73 153 -62 324 253 58 0 chr6 138065562 138065649 -51213905 - MER103 DNA DNA -46 120 29 593 183 48 0 chr6 138067006 138067110 -51212444 + AluSg/x SINE Alu 176 284 -26 210 309 41 10 chr6 138069047 138069144 -51210410 + (TATATG)n Simple_repeat Simple_repeat 3 102 0 747 213 89 30 chr6 138070511 138070713 -51208841 - MER20 DNA MER1_type -5 214 1 298 329 14 68 chr6 138070881 138071027 -51208527 + MER5B DNA MER1_type 27 164 -14 22 0 0 0 chr6 138071600 138071622 -51207932 + AT_rich Low_complexity Low_complexity 1 22 0 423 0 0 0 chr6 138071654 138071701 -51207853 + (CA)n Simple_repeat Simple_repeat 2 48 0 495 284 180 14 chr6 138076000 138076211 -51203343 + MIR SINE MIR 5 250 -12 223 347 53 13 chr6 138077274 138077349 -51202205 + MIR SINE MIR 21 98 -110 1243 57 0 0 chr6 138077889 138078047 -51201507 + L1PA8 LINE L1 6015 6172 0 1604 190 79 12 chr6 138078243 138078585 -51200969 - MLT1A1 LTR MaLR 0 365 1 4891 151 35 2 chr6 138079639 138080504 -51199050 - L1MB3 LINE L1 0 6183 5291 180 0 0 0 chr6 138081175 138081195 -51198359 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 182 36 0 36 chr6 138081194 138081222 -51198332 + (TA)n Simple_repeat Simple_repeat 2 28 0 255 346 173 13 chr6 138081317 138081554 -51198000 + L2 LINE L2 2935 3209 -63 361 300 85 67 chr6 138081855 138082200 -51197354 + L2 LINE L2 2719 3078 -194 230 250 0 0 chr6 138082265 138082313 -51197241 + L2 LINE L2 3261 3308 -5 433 332 11 16 chr6 138082474 138082664 -51196890 + L2 LINE L2 2150 2338 -976 426 255 47 27 chr6 138082667 138082816 -51196738 - MLT1J2 LTR MaLR 0 450 299 430 303 138 49 chr6 138083354 138083826 -51195728 + L2 LINE L2 2444 2957 -357 291 281 86 31 chr6 138084024 138084152 -51195402 + L2 LINE L2 3138 3272 0 23 33 0 0 chr6 138084565 138084595 -51194959 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 138084800 138084822 -51194732 + AT_rich Low_complexity Low_complexity 1 22 0 5704 203 49 6 chr6 138084822 138084948 -51194606 - L1MC1 LINE L1 -9 6324 6205 2507 62 3 0 chr6 138084948 138085252 -51194302 - AluY SINE Alu -6 305 1 5704 203 49 6 chr6 138085252 138086956 -51192598 - L1MC1 LINE L1 -128 6205 4404 288 0 0 0 chr6 138086991 138087023 -51192531 + (TG)n Simple_repeat Simple_repeat 1 32 0 356 184 140 0 chr6 138087036 138087150 -51192404 - AluSc SINE Alu -6 293 164 342 0 0 0 chr6 138087282 138087320 -51192234 + (TG)n Simple_repeat Simple_repeat 1 38 0 1993 117 14 0 chr6 138087333 138087616 -51191938 - AluSg SINE Alu -23 287 1 2529 228 27 47 chr6 138087616 138087757 -51191797 - L1MC1 LINE L1 -1762 4384 4242 2155 115 0 0 chr6 138087757 138088045 -51191509 - AluSx SINE Alu -24 288 1 2529 228 27 47 chr6 138088045 138088698 -51190856 - L1MC1 LINE L1 -1904 4242 3604 2914 190 26 44 chr6 138089635 138090461 -51189093 + L1MD3 LINE L1 6953 7995 0 1070 259 117 35 chr6 138090873 138091302 -51188252 + L2 LINE L2 2333 2796 -518 21 36 0 0 chr6 138092031 138092059 -51187495 + AT_rich Low_complexity Low_complexity 1 28 0 1597 226 21 29 chr6 138095776 138096152 -51183402 - MLT1A2 LTR MaLR -1 373 1 2014 200 130 78 chr6 138096544 138097259 -51182295 - LTR1B LTR ERV1 -74 752 1 1155 204 136 58 chr6 138097296 138097792 -51181762 - LTR48 LTR ERV1 -160 485 2 1181 210 8 25 chr6 138099120 138099363 -51180191 - MER8 DNA MER2_type 0 239 1 242 116 23 0 chr6 138100416 138100459 -51179095 + (CA)n Simple_repeat Simple_repeat 1 44 0 213 194 194 0 chr6 138100473 138100540 -51179014 - L2 LINE L2 -2 3270 3191 235 326 181 7 chr6 138101383 138101521 -51178033 - MER5B DNA MER1_type -16 162 1 2353 121 36 3 chr6 138101910 138102273 -51177281 + THE1C LTR MaLR 1 375 0 559 333 48 36 chr6 138102849 138103263 -51176291 - LTR16C LTR ERVL -14 477 59 252 154 0 0 chr6 138103500 138103539 -51176015 - Alu SINE Alu -13 289 251 710 186 0 21 chr6 138103552 138103697 -51175857 - FLAM_C SINE Alu -1 142 1 220 211 0 0 chr6 138103945 138103983 -51175571 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 1913 172 64 54 chr6 138104182 138104205 -51175349 - L1M2 LINE L1 -743 5403 5382 4100 126 76 7 chr6 138104205 138104834 -51174720 - L1MA8 LINE L1 -6 6285 5593 2195 124 0 3 chr6 138104834 138105140 -51174414 - AluSx SINE Alu -7 305 1 4100 126 76 7 chr6 138105140 138105270 -51174284 - L1MA8 LINE L1 -698 5593 5473 1913 172 64 54 chr6 138105270 138105793 -51173761 - L1M2 LINE L1 -764 5382 4898 1460 144 66 4 chr6 138105791 138106062 -51173492 - L1MA8 LINE L1 -45 6246 5959 * 1988 124 45 13 chr6 138106062 138106376 -51173178 + L1MA8 LINE L1 5609 5932 -359 2357 94 0 0 chr6 138107360 138107659 -51171895 - AluSq SINE Alu -11 302 4 456 311 68 11 chr6 138108138 138108328 -51171226 - MIR SINE MIR -18 244 44 23 0 0 0 chr6 138108810 138108833 -51170721 + AT_rich Low_complexity Low_complexity 1 23 0 393 244 97 34 chr6 138110241 138110417 -51169137 + MER5A DNA MER1_type 2 188 -1 21 36 0 0 chr6 138111084 138111112 -51168442 + AT_rich Low_complexity Low_complexity 1 28 0 2329 89 0 0 chr6 138111710 138112001 -51167553 - AluSx SINE Alu -17 295 5 2214 116 0 3 chr6 138113279 138113580 -51165974 - AluSx SINE Alu -12 300 1 1718 178 4 0 chr6 138114017 138114298 -51165256 - AluJb SINE Alu -29 283 2 227 273 165 33 chr6 138115650 138115809 -51163745 + MIR SINE MIR 38 213 -49 231 312 72 48 chr6 138116453 138116578 -51162976 + L2 LINE L2 3182 3309 -4 1059 244 162 14 chr6 138117956 138118308 -51161246 - L2 LINE L2 0 3313 2910 28 48 0 0 chr6 138118312 138118354 -51161200 + AT_rich Low_complexity Low_complexity 1 42 0 266 308 111 39 chr6 138119813 138120020 -51159534 + L2 LINE L2 1711 1945 -1369 2452 67 0 0 chr6 138120020 138120318 -51159236 - AluY SINE Alu -13 298 1 266 308 111 39 chr6 138120318 138120389 -51159165 + L2 LINE L2 1945 2009 -1305 273 240 182 19 chr6 138121060 138121214 -51158340 + MIR SINE MIR 81 259 -3 2514 72 0 0 chr6 138121474 138121779 -51157775 - AluY SINE Alu -6 305 1 759 246 52 111 chr6 138123686 138124072 -51155482 - L2 LINE L2 -8 3305 2943 414 302 101 16 chr6 138124070 138124259 -51155295 + MIR SINE MIR 57 261 -1 * 1811 271 103 12 chr6 138124531 138125391 -51154163 - HAL1 LINE L1 -82 2425 1487 24 67 0 0 chr6 138125392 138125437 -51154117 + AT_rich Low_complexity Low_complexity 1 45 0 29 60 0 0 chr6 138125695 138125745 -51153809 + AT_rich Low_complexity Low_complexity 1 50 0 571 294 127 50 chr6 138125757 138126213 -51153341 - LTR16C LTR ERVL 0 491 1 562 279 57 48 chr6 138126226 138126559 -51152995 + Tigger8 DNA MER2_type 301 636 -30 764 310 134 22 chr6 138126574 138127391 -51152163 - L2 LINE L2 -9 3304 2406 674 230 100 93 chr6 138128347 138128498 -51151056 - L1ME4a LINE L1 -3 6118 5970 255 61 0 0 chr6 138128498 138128531 -51151023 + (CATA)n Simple_repeat Simple_repeat 3 35 0 674 230 100 93 chr6 138128531 138128919 -51150635 - L1ME4a LINE L1 -151 5970 5575 270 285 35 12 chr6 138128950 138129122 -51150432 - L1ME4a LINE L1 -2330 5478 5303 26 30 0 0 chr6 138129409 138129442 -51150112 + AT_rich Low_complexity Low_complexity 1 33 0 200 132 0 26 chr6 138129498 138129536 -51150018 + (TTA)n Simple_repeat Simple_repeat 1 37 0 2166 149 84 63 chr6 138129996 138130505 -51149049 - MLT2B1 LTR ERVL 0 520 1 295 314 59 25 chr6 138130837 138131041 -51148513 - L1ME4a LINE L1 -2196 3950 3740 23 33 0 0 chr6 138131462 138131492 -51148062 + AT_rich Low_complexity Low_complexity 1 30 0 2117 120 3 0 chr6 138131558 138131850 -51147704 + AluSp SINE Alu 2 294 -19 409 305 126 58 chr6 138133028 138133262 -51146292 - MLT1J2 LTR MaLR -21 429 162 3947 163 90 14 chr6 138133262 138133999 -51145555 + MER54B LTR ERVL 1 793 0 409 305 126 58 chr6 138133999 138134112 -51145442 - MLT1J2 LTR MaLR -288 162 58 1919 124 0 0 chr6 138134666 138134932 -51144622 - AluSq SINE Alu -45 268 3 22 35 0 0 chr6 138135521 138135550 -51144004 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr6 138135785 138135818 -51143736 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr6 138136158 138136187 -51143367 + AT_rich Low_complexity Low_complexity 1 29 0 204 158 0 0 chr6 138136577 138136615 -51142939 + (TG)n Simple_repeat Simple_repeat 2 39 0 1530 156 112 21 chr6 138136628 138136768 -51142786 + MSTA LTR MaLR 1 127 -301 2438 56 0 3 chr6 138136768 138137056 -51142498 - AluY SINE Alu -23 288 2 1530 156 112 21 chr6 138137056 138137254 -51142300 + MSTA LTR MaLR 127 370 -58 31 0 0 0 chr6 138137254 138137285 -51142269 + AT_rich Low_complexity Low_complexity 1 31 0 1330 62 0 0 chr6 138137369 138137530 -51142024 + AluY SINE Alu 144 304 -7 2200 78 26 0 chr6 138137571 138137878 -51141676 - L1PA13 LINE L1 -6 6157 5843 279 305 135 8 chr6 138139718 138140093 -51139461 + L1ME4a LINE L1 5496 5984 -137 325 303 121 23 chr6 138141236 138141368 -51138186 - MIR3 SINE MIR -9 199 55 858 274 34 4 chr6 138141436 138141670 -51137884 + MIR SINE MIR 6 246 -16 394 308 32 16 chr6 138143710 138143895 -51135659 - MLT1L LTR MaLR -52 563 376 226 250 40 13 chr6 138144096 138144172 -51135382 - MLT1L LTR MaLR -531 84 7 3378 164 26 50 chr6 138144208 138144962 -51134592 + L1MB4 LINE L1 5444 6179 -1 1887 111 91 26 chr6 138145864 138146216 -51133338 - THE1C LTR MaLR 0 375 1 1309 218 17 37 chr6 138146810 138147104 -51132450 - AluJo SINE Alu -24 288 1 267 319 25 94 chr6 138147108 138147268 -51132286 - MIR3 SINE MIR -13 195 47 22 56 0 0 chr6 138147277 138147313 -51132241 + AT_rich Low_complexity Low_complexity 1 36 0 195 138 31 46 chr6 138148724 138148789 -51130765 + CT-rich Low_complexity Low_complexity 2 65 0 309 100 0 0 chr6 138148789 138148839 -51130715 + (CA)n Simple_repeat Simple_repeat 1 50 0 240 35 0 0 chr6 138148839 138148868 -51130686 + (CAG)n Simple_repeat Simple_repeat 3 31 0 259 341 70 16 chr6 138149771 138149900 -51129654 - MIR SINE MIR -3 259 124 244 256 110 12 chr6 138150150 138150232 -51129322 - MIR SINE MIR -91 171 82 301 324 138 51 chr6 138150713 138150988 -51128566 + L2 LINE L2 2664 2962 -352 196 246 16 49 chr6 138151287 138151348 -51128206 + L2 LINE L2 3204 3262 -10 442 335 228 25 chr6 138151428 138152111 -51127443 - L3 LINE CR1 -207 1370 549 21 0 0 0 chr6 138152149 138152170 -51127384 + AT_rich Low_complexity Low_complexity 1 21 0 224 323 40 65 chr6 138152718 138152842 -51126712 - MIR SINE MIR -63 145 31 198 103 0 0 chr6 138152895 138152924 -51126630 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 204 323 30 0 chr6 138152929 138153028 -51126526 + CT-rich Low_complexity Low_complexity 4 105 0 2319 94 0 10 chr6 138153791 138154099 -51125455 + AluSc SINE Alu 5 309 0 333 0 0 0 chr6 138154130 138154167 -51125387 + (T)n Simple_repeat Simple_repeat 1 37 0 27 0 0 0 chr6 138154923 138154950 -51124604 + AT_rich Low_complexity Low_complexity 1 27 0 2353 95 3 9 chr6 138157543 138157858 -51121696 + AluSp SINE Alu 1 313 0 1998 223 54 40 chr6 138158694 138159191 -51120363 - LTR40a LTR ERVL 0 519 16 1768 162 3 32 chr6 138159881 138160190 -51119364 - AluJb SINE Alu -12 300 1 434 339 16 26 chr6 138160969 138161158 -51118396 - MIR3 SINE MIR -2 206 20 1454 249 91 68 chr6 138161162 138161872 -51117682 - HsTC2c DNA Tc2 0 729 4 445 302 112 61 chr6 138162711 138163510 -51116044 + L2 LINE L2 2467 3313 0 2294 99 0 7 chr6 138164097 138164401 -51115153 - AluSc SINE Alu -7 302 1 2369 137 47 24 chr6 138164791 138165200 -51114354 - MSTB1 LTR MaLR 0 432 15 435 211 0 0 chr6 138165364 138165459 -51114095 + (CATA)n Simple_repeat Simple_repeat 2 96 0 30 77 0 0 chr6 138165864 138165929 -51113625 + AT_rich Low_complexity Low_complexity 1 65 0 1363 135 55 21 chr6 138166207 138166444 -51113110 + MSTB1 LTR MaLR 188 432 0 325 244 49 12 chr6 138167527 138167609 -51111945 - MIR SINE MIR -10 252 168 908 250 15 0 chr6 138167610 138167810 -51111744 - MLT1B LTR MaLR 0 390 188 463 169 8 8 chr6 138167812 138167942 -51111612 + GA-rich Low_complexity Low_complexity 1 130 0 493 285 32 25 chr6 138167989 138168147 -51111407 - MLT1B LTR MaLR -186 188 30 457 281 37 18 chr6 138168151 138168315 -51111239 - MIR SINE MIR -82 180 14 361 298 25 50 chr6 138168548 138168669 -51110885 + MER5A DNA MER1_type 70 187 -2 1814 131 3 38 chr6 138169866 138170156 -51109398 - AluSx SINE Alu -28 284 5 624 132 7 15 chr6 138170352 138170488 -51109066 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 2255 212 100 19 chr6 138171468 138172118 -51107436 - MER63C DNA MER1_type 0 930 228 1135 152 25 0 chr6 138172125 138172322 -51107232 + MLT2D LTR ERVL 1 202 -212 183 100 0 0 chr6 138172569 138172599 -51106955 + (TC)n Simple_repeat Simple_repeat 1 30 0 359 103 0 59 chr6 138172599 138172667 -51106887 + MLT2B1 LTR ERVL 456 519 -1 842 202 37 0 chr6 138172667 138172855 -51106699 - MER63C DNA MER1_type -715 215 21 22 0 0 0 chr6 138172938 138172960 -51106594 + AT_rich Low_complexity Low_complexity 1 22 0 183 330 136 17 chr6 138174822 138174940 -51104614 - L3 LINE CR1 -108 1469 1338 231 344 0 0 chr6 138175023 138175084 -51104470 - L2 LINE L2 -2 3311 3251 208 182 45 0 chr6 138175093 138175137 -51104417 - L3 LINE CR1 -282 1295 1250 974 94 0 0 chr6 138175414 138175542 -51104012 + AluY SINE Alu 168 295 -16 22 0 0 0 chr6 138175834 138175856 -51103698 + AT_rich Low_complexity Low_complexity 1 22 0 363 275 9 28 chr6 138176611 138176720 -51102834 + MIR SINE MIR 80 186 -76 3890 24 0 0 chr6 138177097 138177550 -51102004 + L1PA3 LINE L1 5701 6153 -2 27 0 0 0 chr6 138177550 138177577 -51101977 + AT_rich Low_complexity Low_complexity 1 27 0 274 309 49 0 chr6 138177963 138178044 -51101510 + MIR SINE MIR 66 150 -112 349 293 19 9 chr6 138178234 138178340 -51101214 + MIR3 SINE MIR 88 194 -14 1956 182 3 20 chr6 138179434 138179791 -51099763 - MLT1A1 LTR MaLR 0 365 15 637 301 87 49 chr6 138181159 138181630 -51097924 - MLT1J LTR MaLR -7 504 16 2317 154 0 8 chr6 138181630 138182014 -51097540 + L1PA16 LINE L1 5778 6158 -8 205 366 49 21 chr6 138182092 138182234 -51097320 + L2 LINE L2 3162 3307 -6 959 307 102 38 chr6 138182246 138182773 -51096781 + L1ME3A LINE L1 5525 6085 -85 259 263 42 76 chr6 138182907 138183025 -51096529 + MIR3 SINE MIR 83 196 -12 1426 146 22 0 chr6 138183333 138183559 -51095995 - MER46A DNA MER2_type -4 232 2 186 353 97 50 chr6 138185350 138185888 -51093666 + L2 LINE L2 1679 2241 -1073 2474 65 0 3 chr6 138186004 138186314 -51093240 - AluY SINE Alu -2 309 1 3763 204 65 12 chr6 138186677 138187594 -51091960 - MER45B DNA AcHobo 0 1040 8 26 64 0 0 chr6 138188371 138188418 -51091136 + AT_rich Low_complexity Low_complexity 1 47 0 285 177 32 6 chr6 138188645 138188803 -51090751 + (TA)n Simple_repeat Simple_repeat 2 163 0 313 253 87 40 chr6 138191611 138191761 -51087793 + MLT1J LTR MaLR 373 607 -8 766 98 49 4 chr6 138191994 138192240 -51087314 + (TA)n Simple_repeat Simple_repeat 1 257 0 357 207 29 114 chr6 138193171 138193311 -51086243 + MER112 DNA MER1_type 121 248 -12 386 167 12 0 chr6 138193885 138193969 -51085585 + (TG)n Simple_repeat Simple_repeat 2 86 0 6260 149 46 17 chr6 138193996 138195191 -51084363 - Tigger3b DNA MER2_type 0 1231 2 21 0 0 0 chr6 138195904 138195925 -51083629 + AT_rich Low_complexity Low_complexity 1 21 0 230 259 59 47 chr6 138197142 138197227 -51082327 + MIR SINE MIR 117 202 -60 13895 188 26 27 chr6 138201215 138203851 -51075703 - L1MA4A LINE L1 -4 7001 4363 195 42 0 0 chr6 138203851 138203875 -51075679 + (TG)n Simple_repeat Simple_repeat 1 24 0 13895 188 26 27 chr6 138203875 138208246 -51071308 - L1MA4A LINE L1 -2642 4363 5 264 122 0 0 chr6 138208794 138208835 -51070719 + (A)n Simple_repeat Simple_repeat 1 41 0 1445 212 0 14 chr6 138209188 138209525 -51070029 - AluJo SINE Alu 0 333 1 1631 184 42 50 chr6 138209857 138210237 -51069317 + MLT1B LTR MaLR 3 379 -11 1227 151 10 0 chr6 138210532 138210737 -51068817 - L1PA13 LINE L1 -19 6144 5938 298 290 11 32 chr6 138210955 138211048 -51068506 + L2 LINE L2 3223 3313 0 1098 163 0 49 chr6 138212078 138212281 -51067273 - MLT1A1 LTR MaLR -172 193 1 223 299 214 7 chr6 138212281 138212435 -51067119 + L2 LINE L2 3128 3313 0 423 0 0 0 chr6 138213523 138213570 -51065984 + (TG)n Simple_repeat Simple_repeat 2 48 0 271 275 104 82 chr6 138213593 138213862 -51065692 - Charlie8 DNA MER1_type -2142 275 1 2459 112 26 3 chr6 138216215 138216564 -51062990 + LTR18A LTR ERVL 1 357 0 505 288 147 0 chr6 138217068 138217238 -51062316 + MIR SINE MIR 47 241 -21 21 36 0 0 chr6 138217381 138217409 -51062145 + AT_rich Low_complexity Low_complexity 1 28 0 217 351 61 45 chr6 138219025 138219386 -51060168 + L2 LINE L2 2716 3082 -190 314 306 83 0 chr6 138220392 138220500 -51059054 - L2 LINE L2 -5 3308 3192 238 342 51 72 chr6 138222325 138222562 -51056992 + L2 LINE L2 2944 3175 -97 184 222 127 63 chr6 138222759 138222822 -51056732 + L2 LINE L2 3008 3074 -239 225 233 0 0 chr6 138223156 138223199 -51056355 - MLT1L LTR MaLR -221 394 352 2134 127 0 10 chr6 138224194 138224502 -51055052 + AluSx SINE Alu 1 305 -7 241 301 191 22 chr6 138224608 138224791 -51054763 - L2 LINE L2 -1 3312 3099 41 21 0 0 chr6 138224918 138224966 -51054588 + AT_rich Low_complexity Low_complexity 1 48 0 2177 173 72 5 chr6 138225507 138225912 -51053642 + Tigger2a DNA MER2_type 1 432 -2 2418 169 226 34 chr6 138226138 138226563 -51052991 - L1MC3 LINE L1 -295 7490 7148 195 100 0 0 chr6 138226563 138226593 -51052961 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 2418 169 226 34 chr6 138226593 138226787 -51052767 - L1MC3 LINE L1 -637 7148 6752 342 364 87 0 chr6 138227831 138228004 -51051550 + MIR SINE MIR 62 249 -13 501 290 28 34 chr6 138228059 138228235 -51051319 - MIR SINE MIR -70 192 18 367 306 27 0 chr6 138228766 138228877 -51050677 - MIR SINE MIR -70 192 79 958 286 131 3 chr6 138228897 138229393 -51050161 + L2 LINE L2 2682 3313 0 1044 165 89 18 chr6 138229403 138229634 -51049920 - MSTD LTR MaLR 0 396 103 211 270 67 11 chr6 138230038 138230127 -51049427 - MIR SINE MIR -64 144 51 334 346 60 16 chr6 138230146 138230331 -51049223 + MIR SINE MIR 20 212 -50 1131 276 54 8 chr6 138230535 138230887 -51048667 + LTR33 LTR ERVL 20 387 -134 201 196 18 71 chr6 138231603 138231659 -51047895 - L2 LINE L2 -4 3309 3257 272 31 0 0 chr6 138232400 138232432 -51047122 - L1PA6 LINE L1 -274 5880 5849 2295 65 0 0 chr6 138232432 138232725 -51046829 + L1PA6 LINE L1 5862 6154 0 2019 148 0 0 chr6 138232794 138233107 -51046447 + AluSx SINE Alu 1 313 0 214 355 99 0 chr6 138233693 138233865 -51045689 + L2 LINE L2 2496 2684 -630 230 231 0 15 chr6 138235690 138235755 -51043799 + CT-rich Low_complexity Low_complexity 2 65 0 334 202 11 11 chr6 138236365 138236459 -51043095 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 453 260 181 19 chr6 138237051 138237252 -51042302 + MIR SINE MIR 33 259 -3 1077 133 25 79 chr6 138237967 138238208 -51041346 - THE1C LTR MaLR -140 235 8 500 246 50 6 chr6 138238221 138238400 -51041154 + Charlie2 DNA MER1_type 2647 2833 -29 22 0 0 0 chr6 138239481 138239503 -51040051 + AT_rich Low_complexity Low_complexity 1 22 0 2246 80 0 7 chr6 138239503 138239789 -51039765 + AluY SINE Alu 1 284 -27 186 43 0 0 chr6 138240346 138240369 -51039185 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 577 319 24 14 chr6 138240850 138241063 -51038491 + MIR SINE MIR 37 251 -11 21 36 0 0 chr6 138241305 138241333 -51038221 + AT_rich Low_complexity Low_complexity 1 28 0 2608 55 0 0 chr6 138244285 138244593 -51034961 - AluY SINE Alu -3 308 1 26 0 0 0 chr6 138245026 138245052 -51034502 + AT_rich Low_complexity Low_complexity 1 26 0 274 163 0 0 chr6 138245282 138245331 -51034223 - L1M3 LINE L1 -439 5729 5681 469 135 0 0 chr6 138245345 138245419 -51034135 + L1M2 LINE L1 5709 5782 -530 306 0 0 0 chr6 138245434 138245468 -51034086 + (TG)n Simple_repeat Simple_repeat 1 34 0 222 37 0 0 chr6 138245494 138245521 -51034033 + (TA)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chr6 138245654 138245683 -51033871 + AT_rich Low_complexity Low_complexity 1 29 0 317 289 46 23 chr6 138246175 138246348 -51033206 - MER104 DNA Tc2 -3 177 1 26 82 0 0 chr6 138246632 138246693 -51032861 + AT_rich Low_complexity Low_complexity 1 61 0 2754 242 56 20 chr6 138248259 138248543 -51031011 - L1ME1 LINE L1 -12 6154 5882 2276 85 0 0 chr6 138248543 138248824 -51030730 - AluSg SINE Alu -11 299 19 2754 242 56 20 chr6 138248824 138249649 -51029905 - L1ME1 LINE L1 -284 5882 5012 1692 216 61 37 chr6 138249795 138250285 -51029269 + MLT1D LTR MaLR 1 502 -3 323 323 31 51 chr6 138250491 138250748 -51028806 - L1ME4a LINE L1 -169 5952 5701 25 90 0 0 chr6 138250851 138250918 -51028636 + AT_rich Low_complexity Low_complexity 1 67 0 369 300 99 11 chr6 138251022 138251285 -51028269 - L1ME4a LINE L1 -274 5847 5562 406 330 61 10 chr6 138251331 138251528 -51028026 + MLT1L LTR MaLR 20 226 -389 21 0 0 0 chr6 138252528 138252549 -51027005 + AT_rich Low_complexity Low_complexity 1 21 0 328 294 75 45 chr6 138252880 138253081 -51026473 - MIR SINE MIR -9 253 47 2474 143 0 3 chr6 138253194 138253559 -51025995 - THE1B LTR MaLR 0 364 1 9835 125 36 8 chr6 138253559 138255096 -51024458 - THE1B-int LTR MaLR 0 1580 1 2778 93 0 0 chr6 138255096 138255460 -51024094 - THE1B LTR MaLR 0 364 1 24 32 0 0 chr6 138256829 138256860 -51022694 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr6 138257583 138257612 -51021942 + AT_rich Low_complexity Low_complexity 1 29 0 234 164 0 0 chr6 138257907 138257962 -51021592 + (TA)n Simple_repeat Simple_repeat 2 56 0 5225 51 0 0 chr6 138258103 138258745 -51020809 - L1PA5 LINE L1 0 6154 5513 347 169 0 13 chr6 138259229 138259306 -51020248 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 255 61 0 0 chr6 138259416 138259449 -51020105 + (CA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr6 138259824 138259846 -51019708 + AT_rich Low_complexity Low_complexity 1 22 0 2187 107 7 0 chr6 138260915 138261204 -51018350 + AluSc SINE Alu 1 291 -18 1056 117 72 14 chr6 138261769 138261992 -51017562 + L1MA9 LINE L1 6013 6248 -64 236 302 52 10 chr6 138262012 138262108 -51017446 + LTR48B LTR ERV1 1 100 -544 * 1891 223 31 16 chr6 138262079 138262523 -51017031 + MER39 LTR ERV1 257 707 0 320 288 103 27 chr6 138262961 138263145 -51016409 + L2 LINE L2 1688 1885 -1429 193 327 69 62 chr6 138263201 138263348 -51016206 + L2 LINE L2 2054 2205 -1109 2303 85 0 16 chr6 138263348 138263653 -51015901 - AluSq SINE Alu -13 300 1 193 327 69 62 chr6 138263653 138263765 -51015789 + L2 LINE L2 2205 2315 -999 202 385 18 41 chr6 138263993 138264211 -51015343 + L2 LINE L2 2620 2832 -482 1167 33 59 0 chr6 138264599 138264751 -51014803 + L1PA4 LINE L1 5992 6152 -3 224 271 0 0 chr6 138264896 138264944 -51014610 + (TA)n Simple_repeat Simple_repeat 1 48 0 225 226 95 24 chr6 138264947 138265031 -51014523 + L1MC4 LINE L1 6614 6703 -1339 * 268 273 23 0 chr6 138264995 138265083 -51014471 - L1MC4 LINE L1 -1339 6703 6614 447 106 0 0 chr6 138265084 138265150 -51014404 + (TA)n Simple_repeat Simple_repeat 1 66 0 24 20 0 60 chr6 138265568 138265618 -51013936 + AT_rich Low_complexity Low_complexity 1 47 0 212 162 27 0 chr6 138265726 138265763 -51013791 - L2 LINE L2 -8 3305 3268 1789 151 0 4 chr6 138265882 138266147 -51013407 + MER1A DNA MER1_type 1 264 -263 640 124 150 9 chr6 138266148 138266261 -51013293 + AluSg SINE Alu 1 129 -181 1942 80 14 11 chr6 138266297 138266572 -51012982 + MER1A DNA MER1_type 254 529 0 275 330 39 10 chr6 138266919 138267022 -51012532 + L2 LINE L2 3203 3308 -5 4729 48 5 3 chr6 138267455 138268064 -51011490 - L1P LINE L1 -2833 3313 2701 4502 53 5 0 chr6 138268064 138268627 -51010927 + L1PA5 LINE L1 5583 6149 -5 4729 48 5 3 chr6 138268627 138268639 -51010915 - L1P LINE L1 -3445 2701 2691 26 64 0 0 chr6 138268919 138268966 -51010588 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr6 138269596 138269617 -51009937 + AT_rich Low_complexity Low_complexity 1 21 0 4406 165 25 8 chr6 138270329 138271127 -51008427 - L1PA16 LINE L1 0 6166 5355 1833 104 89 0 chr6 138274452 138274721 -51004833 - AluSg SINE Alu -17 293 1 185 163 20 0 chr6 138275597 138275646 -51003908 + (TA)n Simple_repeat Simple_repeat 1 50 0 300 297 91 47 chr6 138275828 138276104 -51003450 - L1M4 LINE L1 -1779 4367 4080 264 246 98 31 chr6 138276464 138276688 -51002866 - L1M4 LINE L1 -2960 3186 2948 401 277 42 66 chr6 138276875 138277041 -51002513 + MIR SINE MIR 5 166 -96 1586 154 95 3 chr6 138279286 138279571 -50999983 + AluSx SINE Alu 1 311 -1 21 57 0 0 chr6 138281366 138281401 -50998153 + AT_rich Low_complexity Low_complexity 1 35 0 424 229 97 7 chr6 138282574 138282718 -50996836 - MER103 DNA DNA -2 164 8 2503 200 28 38 chr6 138285732 138286262 -50993292 + Tigger7 DNA MER2_type 1 525 -208 441 227 11 0 chr6 138286258 138286346 -50993208 + Tigger7 DNA MER2_type 2398 2486 -1 * 26 30 0 0 chr6 138287272 138287305 -50992249 + AT_rich Low_complexity Low_complexity 1 33 0 1555 40 0 10 chr6 138287631 138287829 -50991725 - L1PA5 LINE L1 0 6154 5959 387 339 64 0 chr6 138288332 138288503 -50991051 - MIR SINE MIR -59 203 22 32 20 0 20 chr6 138289265 138289303 -50990251 + AT_rich Low_complexity Low_complexity 1 39 -10 1017 91 0 0 chr6 138289303 138289446 -50990108 - L1PA13 LINE L1 -7 6156 6014 32 20 0 20 chr6 138289446 138289457 -50990097 + AT_rich Low_complexity Low_complexity 39 49 0 182 179 26 0 chr6 138290248 138290287 -50989267 - MIR SINE MIR -50 212 173 25 0 0 0 chr6 138292565 138292590 -50986964 + AT_rich Low_complexity Low_complexity 1 25 0 338 209 8 134 chr6 138294633 138294767 -50984787 + MIR SINE MIR 69 185 -77 1183 221 97 3 chr6 138294838 138295146 -50984408 + MER58B DNA MER1_type 5 341 0 424 265 10 0 chr6 138295152 138295254 -50984300 + MER94 DNA DNA 31 133 -1 366 353 100 9 chr6 138295346 138295700 -50983854 + L2 LINE L2 2679 3065 -248 259 287 207 0 chr6 138295734 138295821 -50983733 + L2 LINE L2 3192 3296 -17 439 283 113 74 chr6 138298232 138298623 -50980931 - L1ME4a LINE L1 -96 6025 5609 1590 171 56 0 chr6 138298623 138298922 -50980632 - AluJb SINE Alu 0 314 1 439 283 113 74 chr6 138298922 138299017 -50980537 - L1ME4a LINE L1 -512 5609 5519 310 213 17 217 chr6 138299017 138299121 -50980433 - MIR SINE MIR -11 251 216 1873 117 32 3 chr6 138299121 138299403 -50980151 + AluSg SINE Alu 1 290 -20 310 213 17 217 chr6 138299403 138299528 -50980026 - MIR SINE MIR -46 216 68 317 219 57 48 chr6 138299727 138299832 -50979722 + MIR SINE MIR 155 260 -2 249 204 168 26 chr6 138300049 138300162 -50979392 - Charlie7 DNA MER1_type -11 2601 2473 1985 88 0 4 chr6 138300163 138300424 -50979130 - AluY SINE Alu -16 295 36 519 250 161 17 chr6 138300577 138300813 -50978741 - Charlie7 DNA MER1_type -2051 561 292 243 0 0 0 chr6 138301422 138301449 -50978105 + (CA)n Simple_repeat Simple_repeat 2 28 0 1418 166 69 58 chr6 138301582 138301943 -50977611 + MLT1A1 LTR MaLR 1 365 0 333 0 0 0 chr6 138303071 138303108 -50976446 + (TG)n Simple_repeat Simple_repeat 2 38 0 211 305 49 37 chr6 138303871 138303953 -50975601 + MIR SINE MIR 4 86 -176 315 242 53 42 chr6 138304031 138304126 -50975428 - L2 LINE L2 0 3313 3218 723 305 57 0 chr6 138304163 138304373 -50975181 - MIR SINE MIR -27 235 14 915 161 0 0 chr6 138304607 138304744 -50974810 - FRAM SINE Alu -20 156 20 185 255 0 21 chr6 138306793 138306840 -50972714 + MIR SINE MIR 30 75 -187 950 220 42 0 chr6 138306913 138307154 -50972400 + L1 LINE L1 4586 4836 -1310 5213 149 23 1 chr6 138307331 138308681 -50970873 + L1PA16 LINE L1 4801 6157 -9 25 31 0 0 chr6 138308681 138308713 -50970841 + AT_rich Low_complexity Low_complexity 1 32 0 348 267 134 59 chr6 138309197 138309384 -50970170 - LTR16A LTR ERVL -14 436 236 226 316 0 0 chr6 138309434 138309510 -50970044 - LTR16A LTR ERVL -359 91 16 194 319 0 0 chr6 138309527 138309574 -50969980 + L2 LINE L2 3217 3263 -9 24 53 0 0 chr6 138309619 138309657 -50969897 + AT_rich Low_complexity Low_complexity 1 38 0 449 209 19 82 chr6 138310100 138310136 -50969418 - MER69 DNA AcHobo -1078 148 111 2693 182 26 42 chr6 138310136 138310703 -50968851 - MER68 LTR ERV1 0 562 5 449 209 19 82 chr6 138310703 138310824 -50968730 - MER69 DNA AcHobo -1115 111 1 237 333 75 8 chr6 138311094 138311214 -50968340 + L2 LINE L2 3143 3270 -2 1936 132 0 0 chr6 138311798 138312103 -50967451 - AluSx SINE Alu 0 306 2 261 341 38 15 chr6 138312988 138313120 -50966434 + MIR SINE MIR 18 152 -110 1132 198 16 29 chr6 138313866 138314108 -50965446 - AluJb SINE Alu -73 239 1 989 260 21 21 chr6 138314557 138314799 -50964755 - MIR SINE MIR -6 256 15 369 0 0 0 chr6 138314995 138315036 -50964518 + (TG)n Simple_repeat Simple_repeat 2 42 0 2267 100 13 0 chr6 138315248 138315549 -50964005 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr6 138315629 138315650 -50963904 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr6 138319338 138319376 -50960178 + AT_rich Low_complexity Low_complexity 1 38 0 466 317 75 0 chr6 138319383 138319569 -50959985 + MIR SINE MIR 57 256 -6 33 25 0 0 chr6 138319698 138319738 -50959816 + AT_rich Low_complexity Low_complexity 1 40 0 1401 183 132 29 chr6 138320447 138320758 -50958796 + MER7A DNA MER2_type 3 343 -3 312 290 97 19 chr6 138321691 138321846 -50957708 + MIR SINE MIR 37 203 -59 * 371 273 74 16 chr6 138321840 138321961 -50957593 - L2 LINE L2 0 3313 3186 3096 250 26 8 chr6 138322818 138323806 -50955748 + L1M4 LINE L1 3304 4316 -1830 300 177 97 71 chr6 138323789 138323902 -50955652 + L1MC1 LINE L1 6217 6332 -1 * 1177 175 56 17 chr6 138324404 138324638 -50954916 + AluJo SINE Alu 61 303 -9 523 278 137 13 chr6 138325947 138326174 -50953380 - MIR SINE MIR -3 259 5 294 296 161 19 chr6 138326846 138327008 -50952546 + MIR SINE MIR 60 244 -18 300 261 108 36 chr6 138328800 138328911 -50950643 + MIR3 SINE MIR 72 190 -18 474 293 273 0 chr6 138329529 138329727 -50949827 + MIR SINE MIR 11 262 0 247 380 49 7 chr6 138331123 138331265 -50948289 + MIR SINE MIR 37 184 -78 195 220 51 34 chr6 138331522 138331581 -50947973 + L3 LINE CR1 898 957 -620 180 342 173 25 chr6 138332689 138332851 -50946703 + L2 LINE L2 2934 3133 -139 1939 42 0 17 chr6 138332851 138333087 -50946467 + AluY SINE Alu 71 302 -9 180 342 173 25 chr6 138333087 138333126 -50946428 + L2 LINE L2 3133 3165 -107 2025 88 32 14 chr6 138333346 138333629 -50945925 + AluSc SINE Alu 11 298 -11 187 302 0 0 chr6 138334088 138334131 -50945423 - L2 LINE L2 -262 3051 3009 2078 122 0 3 chr6 138334797 138335105 -50944449 + AluSg SINE Alu 1 307 0 343 333 56 46 chr6 138335429 138335624 -50943930 - MIR SINE MIR -52 210 14 815 233 9 41 chr6 138335842 138336061 -50943493 + MER20 DNA MER1_type 3 214 -5 206 315 144 27 chr6 138339214 138339325 -50940229 + MIR SINE MIR 21 144 -64 2306 88 3 3 chr6 138340014 138340320 -50939234 + AluY SINE Alu 1 306 -5 599 303 81 10 chr6 138342082 138342280 -50937274 - MIR SINE MIR -47 215 4 370 314 20 13 chr6 138342800 138342953 -50936601 + L3 LINE CR1 542 695 -882 864 249 145 65 chr6 138342964 138343674 -50935880 - L2 LINE L2 0 3313 2535 6339 200 24 44 chr6 138343739 138346356 -50933198 - L1MB1 LINE L1 -4 5988 3423 876 222 16 0 chr6 138346361 138346550 -50933004 + L1 LINE L1 3761 3952 -2194 3074 145 25 2 chr6 138346614 138347123 -50932431 - L1PA16 LINE L1 -9 6157 5637 619 193 209 0 chr6 138347145 138347332 -50932222 - L1MB1 LINE L1 -2582 3388 3163 * 3926 248 84 47 chr6 138347308 138350161 -50929393 - L1MB1 LINE L1 -3387 2583 1 960 256 49 3 chr6 138350160 138350445 -50929109 - L1ME LINE L1 -457 5707 5410 * 1428 269 82 25 chr6 138350474 138350995 -50928559 - L2 LINE L2 -809 2505 1955 576 276 35 0 chr6 138351020 138351194 -50928360 - L2 LINE L2 -2429 885 706 214 411 60 6 chr6 138351252 138351420 -50928134 + L3 LINE CR1 763 939 -638 478 213 118 7 chr6 138351906 138352042 -50927512 - MER104 DNA Tc2 -1 179 29 31 0 0 0 chr6 138352206 138352237 -50927317 + AT_rich Low_complexity Low_complexity 1 31 0 234 0 0 0 chr6 138352791 138352817 -50926737 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 530 29 0 0 chr6 138353805 138353874 -50925680 + L1PA4 LINE L1 6087 6155 0 35 41 0 0 chr6 138354000 138354049 -50925505 + AT_rich Low_complexity Low_complexity 1 49 0 752 250 87 5 chr6 138354985 138355181 -50924373 - MER58A DNA MER1_type -6 218 7 355 279 27 9 chr6 138355569 138355680 -50923874 + MIR SINE MIR 70 182 -80 287 304 47 7 chr6 138356235 138356383 -50923171 + MER103 DNA DNA 1 154 -12 23 0 0 0 chr6 138356393 138356416 -50923138 + AT_rich Low_complexity Low_complexity 1 23 0 426 295 92 12 chr6 138356620 138356793 -50922761 - MIR SINE MIR -4 258 72 181 179 0 30 chr6 138357598 138357665 -50921889 + (TA)n Simple_repeat Simple_repeat 1 65 0 23 0 0 0 chr6 138358470 138358493 -50921061 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr6 138359069 138359089 -50920465 + (CAA)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr6 138360857 138360879 -50918675 + AT_rich Low_complexity Low_complexity 1 22 0 279 235 176 10 chr6 138361997 138362099 -50917455 + L2 LINE L2 288 406 -2908 876 281 116 45 chr6 138362100 138362617 -50916937 + L2 LINE L2 558 1111 -2203 576 296 138 0 chr6 138362617 138362813 -50916741 + L2 LINE L2 1386 1608 -1706 1686 133 19 105 chr6 138362848 138363163 -50916391 + AluJb SINE Alu 1 288 -24 2081 109 3 7 chr6 138364044 138364337 -50915217 - AluSq SINE Alu -21 292 1 518 216 191 6 chr6 138364478 138364640 -50914914 + MER3 DNA MER1_type 17 208 -1 229 274 16 0 chr6 138364588 138364650 -50914904 - MER3 DNA MER1_type -108 101 39 * 473 294 99 47 chr6 138364662 138364873 -50914681 - MIR SINE MIR -10 252 31 432 248 188 20 chr6 138365127 138365276 -50914278 - MER5A DNA MER1_type -11 178 5 181 161 0 54 chr6 138365454 138365510 -50914044 + GA-rich Low_complexity Low_complexity 4 56 0 2158 106 3 3 chr6 138365833 138366125 -50913429 - AluSq SINE Alu -20 293 2 1023 169 12 0 chr6 138367358 138367530 -50912024 - AluSg/x SINE Alu -15 297 124 9076 176 14 6 chr6 138367567 138369189 -50910365 + L1PBa LINE L1 2 1637 -5226 * 10434 199 93 14 chr6 138369156 138370616 -50908938 + L1PB1 LINE L1 1 1344 -4864 1952 159 0 0 chr6 138370616 138370912 -50908642 + AluSg SINE Alu 5 300 -10 10434 199 93 14 chr6 138370912 138374837 -50904717 + L1PB1 LINE L1 1344 5840 -368 245 116 29 58 chr6 138374861 138374930 -50904624 + (TTATA)n Simple_repeat Simple_repeat 5 71 0 2223 122 40 0 chr6 138374934 138375288 -50904266 + L1PB1 LINE L1 5839 6206 -2 2796 7 0 0 chr6 138375288 138375596 -50903958 - AluYb8 SINE Alu -10 308 1 22 0 0 0 chr6 138375878 138375900 -50903654 + AT_rich Low_complexity Low_complexity 1 22 0 12291 104 19 0 chr6 138376962 138378789 -50900765 - L1P3 LINE L1 -2400 4061 2200 1004 96 0 0 chr6 138378786 138378921 -50900633 - L1P3 LINE L1 -6317 144 10 * 195 69 0 0 chr6 138380086 138380115 -50899439 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 233 269 28 54 chr6 138380755 138380864 -50898690 + MER5A DNA MER1_type 75 189 0 21 36 0 0 chr6 138381537 138381565 -50897989 + AT_rich Low_complexity Low_complexity 1 28 0 2170 126 0 0 chr6 138381568 138381878 -50897676 + AluSg SINE Alu 1 310 0 192 182 0 0 chr6 138385570 138385614 -50893940 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 2256 108 40 14 chr6 138385648 138385999 -50893555 - THE1B LTR MaLR -2 362 3 10712 114 17 3 chr6 138386001 138387558 -50891996 - THE1B-int LTR MaLR 0 1580 1 1857 138 73 29 chr6 138387560 138387901 -50891653 - THE1B LTR MaLR -2 362 7 570 98 0 0 chr6 138387901 138387983 -50891571 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 429 215 32 0 chr6 138388878 138388971 -50890583 + MLT1A1 LTR MaLR 1 96 -278 1422 255 14 8 chr6 138388975 138389332 -50890222 - MLT1A1 LTR MaLR -6 359 1 1157 211 36 46 chr6 138389332 138389612 -50889942 + MLT1A1 LTR MaLR 89 365 0 21 0 0 0 chr6 138390825 138390846 -50888708 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr6 138391790 138391839 -50887715 + AT_rich Low_complexity Low_complexity 1 49 0 287 261 15 45 chr6 138393223 138393357 -50886197 + (TATATG)n Simple_repeat Simple_repeat 3 132 0 1320 290 86 40 chr6 138394018 138394226 -50885328 + L2 LINE L2 1555 1752 -1561 1983 92 0 4 chr6 138394226 138394487 -50885067 - AluSg SINE Alu -4 306 47 1320 290 86 40 chr6 138394487 138395118 -50884436 + L2 LINE L2 1752 3192 -121 182 271 52 42 chr6 138395142 138395238 -50884316 + L2 LINE L2 3144 3240 -73 4324 22 0 0 chr6 138395903 138396405 -50883149 - L1PA3 LINE L1 -8 6147 5646 481 206 81 62 chr6 138396605 138396765 -50882789 - L2 LINE L2 -1 3312 3150 477 244 50 103 chr6 138396770 138397049 -50882505 + L1ME4a LINE L1 5545 5802 -319 1825 154 28 64 chr6 138397049 138397438 -50882116 - THE1C LTR MaLR 0 375 1 477 244 50 103 chr6 138397438 138397518 -50882036 + L1ME4a LINE L1 5802 5885 -236 2198 112 3 3 chr6 138397888 138398200 -50881354 + AluSx SINE Alu 1 312 0 1239 137 191 72 chr6 138398307 138398642 -50880912 + THE1C LTR MaLR 1 375 0 226 151 38 0 chr6 138399638 138399691 -50879863 + L1MC4 LINE L1 6649 6703 -1339 344 273 91 52 chr6 138400144 138400375 -50879179 - HAL1 LINE L1 -4 2503 2264 292 266 38 13 chr6 138400498 138400577 -50878977 + MER82 DNA MER2_type 1 81 -572 2035 252 72 21 chr6 138400582 138401154 -50878400 + MER82 DNA MER2_type 53 653 0 2432 80 0 0 chr6 138401329 138401630 -50877924 - AluSx SINE Alu -11 301 1 579 286 125 56 chr6 138401661 138402578 -50876976 - HAL1 LINE L1 -737 1770 790 581 188 18 0 chr6 138402740 138402852 -50876702 - AluSx SINE Alu -3 309 196 1087 119 0 0 chr6 138402853 138402996 -50876558 - AluSx SINE Alu -167 146 4 2606 238 58 27 chr6 138403015 138403863 -50875691 - MER63C DNA MER1_type -48 882 9 180 229 0 0 chr6 138404134 138404169 -50875385 - L2 LINE L2 0 3313 3279 25 31 0 0 chr6 138406197 138406229 -50873325 + AT_rich Low_complexity Low_complexity 1 32 0 6697 166 34 16 chr6 138406419 138408644 -50870910 + L1MA3 LINE L1 4045 6305 0 212 130 22 22 chr6 138408653 138408699 -50870855 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 202 206 0 44 chr6 138408812 138408880 -50870674 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 480 294 46 26 chr6 138409184 138409378 -50870176 - MIR SINE MIR -62 200 3 191 222 67 0 chr6 138409816 138409861 -50869693 - L2 LINE L2 0 3272 3225 780 231 0 0 chr6 138410164 138410320 -50869234 - FRAM SINE Alu -10 156 1 30 27 0 0 chr6 138410401 138410438 -50869116 + AT_rich Low_complexity Low_complexity 1 37 0 32 26 0 0 chr6 138413953 138413992 -50865562 + AT_rich Low_complexity Low_complexity 1 39 0 232 392 39 33 chr6 138414753 138414906 -50864648 - MIR SINE MIR -82 180 27 199 372 32 11 chr6 138415122 138415216 -50864338 - L2 LINE L2 -176 3096 3001 640 248 90 5 chr6 138418486 138418708 -50860846 + L1MCc LINE L1 19 259 -6164 682 270 60 106 chr6 138418999 138419529 -50860025 + L1MCc LINE L1 784 1289 -5134 655 260 168 7 chr6 138419547 138419851 -50859703 + L1ME1 LINE L1 5788 6140 -26 684 200 87 27 chr6 138419909 138420094 -50859460 + L1MCc LINE L1 19 214 -6209 39 74 0 0 chr6 138420317 138420398 -50859156 + AT_rich Low_complexity Low_complexity 1 81 0 21 0 0 0 chr6 138420650 138420671 -50858883 + AT_rich Low_complexity Low_complexity 1 21 0 332 294 153 43 chr6 138420938 138421173 -50858381 + MIR SINE MIR 2 262 0 229 310 69 11 chr6 138421851 138421938 -50857616 + MIR SINE MIR 60 151 -57 32 111 0 0 chr6 138422325 138422469 -50857085 + AT_rich Low_complexity Low_complexity 1 144 0 255 341 171 9 chr6 138422535 138422746 -50856808 + L2 LINE L2 2298 2542 -772 469 283 87 3 chr6 138422873 138423200 -50856354 + L1MCc LINE L1 2871 3180 -3761 5127 174 36 68 chr6 138423202 138424334 -50855220 + MER52A LTR ERV1 660 1755 0 2512 243 51 26 chr6 138424342 138424417 -50855137 + L1MCc LINE L1 3224 3296 -3645 2622 39 0 0 chr6 138424417 138424724 -50854830 + AluY SINE Alu 1 307 -4 2512 243 51 26 chr6 138424724 138425595 -50853959 + L1MCc LINE L1 3296 4193 -2748 1577 249 98 25 chr6 138425609 138426317 -50853237 + L1MCc LINE L1 4679 5437 -1504 1494 190 17 3 chr6 138426321 138426616 -50852938 + L1MC1 LINE L1 6030 6328 -5 315 300 33 25 chr6 138427152 138427272 -50852282 - MIR SINE MIR -40 222 102 1956 101 70 3 chr6 138427760 138428047 -50851507 - AluY SINE Alu -5 306 1 22 0 0 0 chr6 138428159 138428181 -50851373 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 138428596 138428617 -50850937 + AT_rich Low_complexity Low_complexity 1 21 0 1172 254 67 49 chr6 138428891 138429280 -50850274 + MLT2C1 LTR ERVL 1 396 -1 264 319 0 14 chr6 138429860 138429954 -50849600 - MER5A DNA MER1_type -32 146 54 805 204 13 0 chr6 138431012 138431169 -50848385 - FRAM SINE Alu -7 159 1 578 183 0 16 chr6 138431197 138431323 -50848231 + CT-rich Low_complexity Low_complexity 1 124 0 773 181 0 0 chr6 138431323 138431456 -50848098 - FLAM_C SINE Alu 0 143 11 22 0 0 0 chr6 138434428 138434450 -50845104 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 138434873 138434901 -50844653 + AT_rich Low_complexity Low_complexity 1 28 0 181 347 42 53 chr6 138434935 138435030 -50844524 - L2 LINE L2 -8 3264 3171 2471 103 46 0 chr6 138435139 138435487 -50844067 + THE1B LTR MaLR 1 364 0 8485 116 134 31 chr6 138435487 138436919 -50842635 + THE1B-int LTR MaLR 1 1580 0 2496 109 3 14 chr6 138436919 138437277 -50842277 + THE1B LTR MaLR 1 354 -10 207 0 0 0 chr6 138437306 138437329 -50842225 + (TCTA)n Simple_repeat Simple_repeat 2 24 0 186 43 0 0 chr6 138437333 138437356 -50842198 + (CA)n Simple_repeat Simple_repeat 2 24 0 530 271 36 42 chr6 138438676 138438868 -50840686 + MIR SINE MIR 13 203 -59 2491 64 0 0 chr6 138438869 138439166 -50840388 + AluY SINE Alu 1 297 -14 1336 210 43 62 chr6 138439176 138439383 -50840171 - MLT1A1 LTR MaLR -1 364 166 2849 0 0 0 chr6 138439383 138439692 -50839862 + AluYa5 SINE Alu 1 309 -2 1336 210 43 62 chr6 138439692 138439855 -50839699 - MLT1A1 LTR MaLR -199 166 1 282 250 88 14 chr6 138440593 138440753 -50838801 + L1ME LINE L1 5306 5477 -644 827 209 87 0 chr6 138440904 138441100 -50838454 + L1M4 LINE L1 4062 4274 -1872 665 147 9 9 chr6 138441156 138441265 -50838289 + Tigger1 DNA MER2_type 39 147 -2271 * 1144 144 79 5 chr6 138441263 138441465 -50838089 + Tigger1 DNA MER2_type 2202 2418 0 836 285 104 39 chr6 138442618 138443032 -50836522 + MLT1J2 LTR MaLR 7 447 -3 196 347 0 28 chr6 138443156 138443228 -50836326 + L3 LINE CR1 1507 1576 -1 227 203 17 51 chr6 138445114 138445173 -50834381 + (CATTC)n Simple_repeat Simple_repeat 1 57 0 1658 108 131 0 chr6 138445354 138445613 -50833941 + AluY SINE Alu 1 293 -8 2223 99 3 3 chr6 138445614 138445918 -50833636 + AluSx SINE Alu 1 304 -8 180 0 0 0 chr6 138446235 138446255 -50833299 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 244 315 120 24 chr6 138447101 138447381 -50832173 - L2 LINE L2 -4 3309 2949 180 0 0 0 chr6 138448893 138448913 -50830641 + (CA)n Simple_repeat Simple_repeat 1 20 0 13102 25 0 0 chr6 138449624 138451947 -50827607 + L1PA3 LINE L1 3830 6152 -3 1867 241 55 4 chr6 138452744 138453201 -50826353 - MER119 DNA MER1_type -103 480 1 459 329 94 8 chr6 138453537 138453771 -50825783 - L3b LINE CR1 -227 1356 1103 214 318 123 38 chr6 138455182 138455393 -50824161 - MIR SINE MIR -2 260 32 203 103 26 0 chr6 138455470 138455509 -50824045 + T-rich Low_complexity Low_complexity 2 41 0 1637 106 32 0 chr6 138455515 138455761 -50823793 - L1PA16 LINE L1 -9 6157 5904 2229 125 97 8 chr6 138456015 138456408 -50823146 + MSTA LTR MaLR 1 428 0 1733 194 53 19 chr6 138459037 138459414 -50820140 + MLT1B LTR MaLR 1 390 0 330 26 0 0 chr6 138460176 138460215 -50819339 + (TG)n Simple_repeat Simple_repeat 2 40 0 409 341 142 30 chr6 138460224 138460337 -50819217 + L2 LINE L2 2483 2582 -731 2282 104 3 0 chr6 138460337 138460644 -50818910 - AluSx SINE Alu -4 308 1 409 341 142 30 chr6 138460644 138461049 -50818505 + L2 LINE L2 2582 3050 -263 214 280 53 27 chr6 138461065 138461140 -50818414 + L2 LINE L2 3222 3298 -15 1651 124 30 4 chr6 138462008 138462274 -50817280 - L1MA5A LINE L1 0 6297 6025 2379 277 88 50 chr6 138463280 138464172 -50815382 + L1ME3 LINE L1 3788 4645 -1517 4161 184 28 11 chr6 138464172 138465041 -50814513 - L1MA4 LINE L1 -4 6296 5414 2379 277 88 50 chr6 138465041 138466046 -50813508 + L1ME3 LINE L1 4645 5761 -401 244 248 28 28 chr6 138466091 138466200 -50813354 + L1ME3 LINE L1 6051 6159 -3 568 322 93 20 chr6 138466465 138467021 -50812533 + L1MC4a LINE L1 5313 5909 -1899 3148 204 40 64 chr6 138467225 138467262 -50812292 + L1MB7 LINE L1 4662 4698 -1486 3383 79 9 2 chr6 138467262 138467717 -50811837 + LTR22A LTR ERVK 1 458 0 3148 204 40 64 chr6 138467717 138469234 -50810320 + L1MB7 LINE L1 4698 6182 -2 487 274 144 17 chr6 138470651 138471140 -50808414 - L1ME3A LINE L1 -208 5962 5404 1165 273 93 3 chr6 138471276 138471661 -50807893 - L1MD2 LINE L1 0 6359 5940 2300 94 0 0 chr6 138471661 138471970 -50807584 + AluY SINE Alu 1 309 -2 2761 210 58 17 chr6 138471983 138473020 -50806534 - L1MD2 LINE L1 -367 5875 4802 453 280 98 72 chr6 138473229 138473978 -50805576 - L1MD2 LINE L1 -1445 4701 3934 1365 212 7 23 chr6 138473985 138474287 -50805267 - AluJo SINE Alu -13 299 3 284 379 122 5 chr6 138474478 138474692 -50804862 + MIR SINE MIR 11 249 -13 1327 216 17 14 chr6 138476876 138477168 -50802386 - Charlie2 DNA MER1_type -716 2146 1854 342 45 0 0 chr6 138477438 138477482 -50802072 + (CA)n Simple_repeat Simple_repeat 2 45 0 382 248 128 16 chr6 138478385 138478510 -50801044 + MLT1E3 LTR MaLR 5 143 -511 1739 234 21 5 chr6 138478577 138478961 -50800593 + MLT1E3 LTR MaLR 235 624 0 266 295 54 39 chr6 138479203 138479332 -50800222 - MIR SINE MIR -13 249 119 565 244 35 29 chr6 138479631 138479803 -50799751 - MER5B DNA MER1_type -3 175 3 324 326 79 37 chr6 138480381 138480571 -50798983 + L2 LINE L2 2852 3049 -223 2061 108 3 7 chr6 138480952 138481240 -50798314 - AluSq SINE Alu -26 287 1 266 292 42 42 chr6 138481245 138481413 -50798141 - L1ME LINE L1 -389 5732 5565 2205 107 3 0 chr6 138482150 138482448 -50797106 + AluSq SINE Alu 1 299 -14 24 53 0 0 chr6 138482585 138482623 -50796931 + AT_rich Low_complexity Low_complexity 1 38 0 257 363 0 0 chr6 138483126 138483217 -50796337 + GA-rich Low_complexity Low_complexity 3 93 0 21 0 0 0 chr6 138483442 138483463 -50796091 + AT_rich Low_complexity Low_complexity 1 21 0 200 224 17 17 chr6 138484254 138484312 -50795242 + CT-rich Low_complexity Low_complexity 5 62 0 2242 90 3 0 chr6 138484958 138485247 -50794307 + AluSc SINE Alu 3 292 -17 22 35 0 0 chr6 138486892 138486921 -50792633 + AT_rich Low_complexity Low_complexity 1 29 0 882 204 0 0 chr6 138488692 138488849 -50790705 - FRAM SINE Alu -10 166 10 876 196 92 16 chr6 138488919 138489103 -50790451 + AluJo SINE Alu 73 270 -42 802 250 83 43 chr6 138489450 138489722 -50789832 + MLT2D LTR ERVL 84 480 -40 570 197 0 0 chr6 138489722 138489874 -50789680 + (TA)n Simple_repeat Simple_repeat 2 153 0 1871 183 33 19 chr6 138489879 138489904 -50789650 + MLT1A1 LTR MaLR 1 24 -341 2427 101 27 33 chr6 138489904 138490270 -50789284 - THE1B LTR MaLR 0 364 1 1871 183 33 19 chr6 138490270 138490604 -50788950 + MLT1A1 LTR MaLR 24 365 0 233 269 28 54 chr6 138492885 138492994 -50786560 - MER5A DNA MER1_type 0 189 75 195 69 0 0 chr6 138493634 138493663 -50785891 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 22 70 0 0 chr6 138494562 138494605 -50784949 + AT_rich Low_complexity Low_complexity 1 43 0 1004 96 0 0 chr6 138494828 138494963 -50784591 + L1PA7 LINE L1 10 144 -6317 * 20953 97 13 0 chr6 138494960 138497978 -50781576 + L1PA7 LINE L1 2200 5257 -1204 23 0 0 0 chr6 138498080 138498103 -50781451 + AT_rich Low_complexity Low_complexity 1 23 0 6800 58 14 0 chr6 138498130 138499333 -50780221 + L1PA7 LINE L1 5251 6469 0 1822 190 0 0 chr6 138499497 138499808 -50779746 + AluSx SINE Alu 1 311 -1 315 286 12 0 chr6 138499810 138499894 -50779660 - L2 LINE L2 -2553 761 677 23 0 0 0 chr6 138500351 138500374 -50779180 + AT_rich Low_complexity Low_complexity 1 23 0 3112 22 8 0 chr6 138500375 138500744 -50778810 - L1PA2 LINE L1 -1 6154 5783 183 337 12 36 chr6 138500954 138501037 -50778517 + L2 LINE L2 3177 3257 -56 198 0 0 0 chr6 138501054 138501076 -50778478 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 489 342 35 18 chr6 138501991 138502219 -50777335 + MIR SINE MIR 28 259 -3 857 260 53 42 chr6 138503078 138503436 -50776118 - MLT1D LTR MaLR 0 505 144 198 294 59 0 chr6 138504504 138504572 -50774982 + MIR3 SINE MIR 109 180 -28 189 0 0 0 chr6 138504718 138504739 -50774815 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 256 250 37 56 chr6 138505784 138505892 -50773662 + L1MEd LINE L1 256 361 -6011 1646 214 9 3 chr6 138506264 138506586 -50772968 + MLT1A1 LTR MaLR 30 353 -12 409 347 44 8 chr6 138506615 138507010 -50772544 + L1MEd LINE L1 1362 1922 -899 429 222 129 35 chr6 138507461 138507632 -50771922 + L1MEd LINE L1 2389 2575 -3807 403 347 12 58 chr6 138507753 138508168 -50771386 + L1ME LINE L1 5265 5660 -510 1011 91 0 0 chr6 138508197 138508340 -50771214 + L1MA5A LINE L1 6150 6292 -5 248 248 90 7 chr6 138508440 138508597 -50770957 + L1ME LINE L1 5723 5897 -273 205 262 33 0 chr6 138508838 138508899 -50770655 + (TA)n Simple_repeat Simple_repeat 2 64 0 854 234 37 0 chr6 138509035 138509223 -50770331 + MIR SINE MIR 63 257 -5 605 301 98 18 chr6 138509310 138509708 -50769846 - L1M4 LINE L1 -1527 4619 4190 1895 105 60 14 chr6 138510112 138510397 -50769157 - AluSc SINE Alu -11 298 1 1038 91 0 0 chr6 138510399 138510531 -50769023 - AluSq/x SINE Alu -181 132 1 251 220 21 0 chr6 138512902 138512972 -50766582 + MIR SINE MIR 60 135 -73 216 0 0 0 chr6 138513165 138513189 -50766365 + (T)n Simple_repeat Simple_repeat 1 24 0 194 61 0 30 chr6 138513324 138513357 -50766197 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 21 57 0 0 chr6 138513777 138513812 -50765742 + AT_rich Low_complexity Low_complexity 1 35 0 682 269 8 100 chr6 138513974 138514047 -50765507 - MIR SINE MIR -5 257 179 2271 92 3 7 chr6 138514047 138514353 -50765201 - AluSq SINE Alu -2 311 7 682 269 8 100 chr6 138514353 138514539 -50765015 - MIR SINE MIR -83 179 22 393 306 0 16 chr6 138514882 138515006 -50764548 + MIR SINE MIR 87 208 -54 1366 218 38 0 chr6 138515503 138515792 -50763762 - LOR1b LTR ERV1 -149 312 13 1032 284 76 32 chr6 138516416 138517052 -50762502 - L2 LINE L2 0 3313 2645 202 294 76 67 chr6 138517195 138517314 -50762240 - L2 LINE L2 -3 3310 3191 237 224 0 0 chr6 138517510 138517559 -50761995 + CT-rich Low_complexity Low_complexity 4 52 0 1854 140 3 11 chr6 138517876 138518162 -50761392 + AluSx SINE Alu 19 302 -10 246 327 82 53 chr6 138518205 138518413 -50761141 + L2 LINE L2 3054 3267 -5 310 383 71 0 chr6 138518472 138518613 -50760941 - L2 LINE L2 -7 3265 3115 219 368 61 9 chr6 138518958 138519072 -50760482 - L2 LINE L2 -568 2746 2627 668 271 138 0 chr6 138519113 138519331 -50760223 + MIR SINE MIR 14 261 -1 1952 131 35 3 chr6 138519500 138519790 -50759764 + AluJb SINE Alu 1 299 -13 23 33 0 0 chr6 138519824 138519854 -50759700 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr6 138520772 138520805 -50758749 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr6 138522164 138522197 -50757357 + AT_rich Low_complexity Low_complexity 1 33 0 1288 161 18 0 chr6 138522277 138522500 -50757054 - MER30 DNA MER1_type 0 230 4 22 0 0 0 chr6 138522724 138522746 -50756808 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 138523170 138523192 -50756362 + AT_rich Low_complexity Low_complexity 1 22 0 2295 107 0 7 chr6 138524257 138524566 -50754988 + AluSg SINE Alu 1 307 -3 2301 298 94 57 chr6 138525769 138527201 -50752353 - L2 LINE L2 -531 2783 1300 364 219 84 8 chr6 138527529 138527648 -50751906 + L1ME LINE L1 5646 5773 -348 350 330 54 73 chr6 138527745 138528153 -50751401 + L2 LINE L2 2787 3184 -129 366 103 39 0 chr6 138528223 138528301 -50751253 + (TA)n Simple_repeat Simple_repeat 2 82 0 198 103 0 0 chr6 138530095 138530124 -50749430 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 220 386 92 39 chr6 138530124 138530513 -50749041 - L2 LINE L2 -5 3267 2858 228 125 0 0 chr6 138530974 138531006 -50748548 - MER70A LTR ERVL 0 472 441 * 2870 168 28 13 chr6 138531004 138531473 -50748081 - MER70B LTR ERVL -102 476 1 1433 181 43 50 chr6 138531655 138531958 -50747596 + AluJo SINE Alu 3 303 -9 609 168 11 45 chr6 138531958 138532137 -50747417 + G-rich Low_complexity Low_complexity 4 176 0 249 235 10 20 chr6 138532152 138532250 -50747304 + GA-rich Low_complexity Low_complexity 1 97 0 303 240 101 23 chr6 138532252 138532381 -50747173 + LTR33A LTR ERVL 385 523 0 470 328 95 12 chr6 138533204 138533442 -50746112 + MLT1J2 LTR MaLR 62 319 -131 296 340 10 0 chr6 138533442 138533539 -50746015 + Charlie1 DNA MER1_type 1 98 -2663 2591 186 41 52 chr6 138533547 138534280 -50745274 + Charlie1 DNA MER1_type 2033 2757 -4 280 268 12 0 chr6 138534325 138534407 -50745147 + MLT1J1 LTR MaLR 364 446 0 425 342 131 44 chr6 138535929 138536450 -50743104 + L2 LINE L2 2412 2977 -337 290 291 138 57 chr6 138536694 138536904 -50742650 + MIR SINE MIR 34 260 -2 288 224 56 47 chr6 138536954 138537061 -50742493 + L2 LINE L2 3118 3225 -88 1603 177 17 24 chr6 138537471 138537765 -50741789 - AluJb SINE Alu -17 295 4 229 196 20 20 chr6 138538482 138538533 -50741021 - MER94 DNA DNA -83 51 1 8415 128 12 1 chr6 138538704 138539979 -50739575 - HSMAR2 DNA Mariner -7 1295 7 969 248 33 0 chr6 138540755 138540965 -50738589 + MER20 DNA MER1_type 3 219 0 443 243 264 0 chr6 138541180 138541328 -50738226 - MER5A DNA MER1_type -2 187 1 2992 226 13 5 chr6 138541433 138542047 -50737507 - MER82 DNA MER2_type 0 653 35 207 200 0 22 chr6 138542507 138542552 -50737002 + CT-rich Low_complexity Low_complexity 2 45 0 324 0 0 0 chr6 138542561 138542597 -50736957 + (TG)n Simple_repeat Simple_repeat 1 36 0 311 140 0 0 chr6 138544277 138544327 -50735227 + L2 LINE L2 3262 3311 -2 339 276 86 9 chr6 138545086 138545202 -50734352 + L2 LINE L2 3189 3313 0 23 0 0 0 chr6 138545614 138545637 -50733917 + AT_rich Low_complexity Low_complexity 1 23 0 606 165 0 0 chr6 138545766 138545863 -50733691 + FRAM SINE Alu 63 159 -17 222 375 62 0 chr6 138546253 138546349 -50733205 + MIR3 SINE MIR 14 115 -93 485 361 46 12 chr6 138546637 138546878 -50732676 - MIR SINE MIR -6 256 8 890 242 124 57 chr6 138547262 138547302 -50732252 - MLT2D LTR ERVL 0 414 378 583 45 0 34 chr6 138547302 138547391 -50732163 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 890 242 124 57 chr6 138547391 138547738 -50731816 - MLT2D LTR ERVL -36 378 1 607 154 45 0 chr6 138548778 138548888 -50730666 - L2 LINE L2 -9 3304 3190 33 0 0 0 chr6 138549077 138549110 -50730444 + AT_rich Low_complexity Low_complexity 1 33 0 261 94 0 75 chr6 138549220 138549273 -50730281 + L1MA1 LINE L1 6036 6084 -218 201 74 0 0 chr6 138549274 138549301 -50730253 + (A)n Simple_repeat Simple_repeat 1 27 0 31 26 0 0 chr6 138550097 138550135 -50729419 + AT_rich Low_complexity Low_complexity 1 38 0 235 318 47 23 chr6 138550550 138550679 -50728875 - MIR SINE MIR -78 184 53 2633 45 0 0 chr6 138550817 138551128 -50728426 + AluY SINE Alu 1 311 0 1988 157 0 0 chr6 138551773 138552072 -50727482 - AluSx SINE Alu -13 299 1 630 206 63 46 chr6 138552982 138553157 -50726397 - MER5B DNA MER1_type 0 178 1 30 0 0 0 chr6 138553522 138553552 -50726002 + AT_rich Low_complexity Low_complexity 1 30 0 229 304 167 10 chr6 138553611 138553713 -50725841 - L1ME3A LINE L1 -91 6473 6356 962 265 103 29 chr6 138553797 138554188 -50725366 - L1ME3A LINE L1 -233 6331 5971 989 263 0 0 chr6 138554188 138554412 -50725142 + MER58A DNA MER1_type 1 224 0 962 265 103 29 chr6 138554412 138554827 -50724727 - L1ME3A LINE L1 -593 5971 5466 893 200 28 6 chr6 138554881 138555061 -50724493 + MER20 DNA MER1_type 33 216 -3 795 278 112 22 chr6 138555116 138555411 -50724143 - L1ME3A LINE L1 -1137 5403 5136 2512 131 5 17 chr6 138555411 138555815 -50723739 + L1PA15 LINE L1 5762 6160 -5 795 278 112 22 chr6 138555815 138556196 -50723358 - L1ME3A LINE L1 -1404 5136 4666 445 264 69 7 chr6 138556426 138556570 -50722984 - L2 LINE L2 -5 3308 3156 261 274 67 0 chr6 138556600 138556760 -50722794 - L1MDa LINE L1 -5092 1438 1258 366 315 39 8 chr6 138557752 138557882 -50721672 + L2 LINE L2 3180 3313 0 796 150 0 8 chr6 138558391 138558524 -50721030 - FLAM_C SINE Alu 0 133 2 198 0 0 0 chr6 138558859 138558881 -50720673 + (TG)n Simple_repeat Simple_repeat 2 23 0 2205 230 90 46 chr6 138558910 138560044 -50719510 - L1ME1 LINE L1 -4 6556 5376 * 43096 40 5 1 chr6 138560041 138566112 -50713442 - L1PA4 LINE L1 -1 6154 57 4381 257 84 20 chr6 138566120 138567817 -50711737 - L1ME1 LINE L1 -1182 5358 3771 4180 208 27 18 chr6 138567817 138568672 -50710882 - MER21B LTR ERV1 0 863 1 4381 257 84 20 chr6 138568672 138568683 -50710871 - L1ME1 LINE L1 -2769 3771 3762 228 172 0 0 chr6 138568683 138568741 -50710813 + T-rich Low_complexity Low_complexity 1 58 0 491 165 0 0 chr6 138568774 138568859 -50710695 - L1ME1 LINE L1 -4989 1551 1467 595 293 49 10 chr6 138568884 138569089 -50710465 + L1MDa LINE L1 21 233 -6307 1374 204 52 21 chr6 138569207 138569496 -50710058 + AluJo SINE Alu 1 298 -14 2974 233 46 17 chr6 138569509 138570289 -50709265 + L1MDa LINE L1 665 1467 -5073 225 0 0 0 chr6 138570335 138570360 -50709194 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 202 414 0 9 chr6 138570753 138570864 -50708690 + MIR SINE MIR 3 112 -150 323 60 20 0 chr6 138571004 138571054 -50708500 + (TG)n Simple_repeat Simple_repeat 2 52 0 258 107 36 50 chr6 138571300 138571440 -50708114 + (TA)n Simple_repeat Simple_repeat 1 138 0 180 0 0 0 chr6 138573920 138573940 -50705614 + (A)n Simple_repeat Simple_repeat 1 20 0 825 227 62 35 chr6 138574582 138574838 -50704716 - MER34 LTR ERV1 -279 263 1 29 47 0 0 chr6 138574967 138575010 -50704544 + AT_rich Low_complexity Low_complexity 1 43 0 360 327 55 12 chr6 138576121 138576286 -50703268 + MIR SINE MIR 2 173 -89 1166 182 27 143 chr6 138576385 138576798 -50702756 + MLT1A1 LTR MaLR 1 365 0 2024 76 4 4 chr6 138576842 138577105 -50702449 - AluY SINE Alu -16 295 33 3419 147 62 37 chr6 138577118 138577228 -50702326 - L1MA9 LINE L1 -31 6281 6175 213 39 0 0 chr6 138577228 138577254 -50702300 + (TG)n Simple_repeat Simple_repeat 1 26 0 3419 147 62 37 chr6 138577254 138577865 -50701689 - L1MA9 LINE L1 -137 6175 5542 372 209 0 0 chr6 138577863 138577930 -50701624 + L1ME1 LINE L1 4809 4875 -1271 * 250 132 0 0 chr6 138577936 138577974 -50701580 - MLT1G1 LTR MaLR -557 38 1 2023 201 27 27 chr6 138578062 138578703 -50700851 + L1M2 LINE L1 4888 5540 -743 555 234 9 0 chr6 138578943 138579054 -50700500 + MLT1G1 LTR MaLR 1 112 -483 1808 232 80 18 chr6 138579093 138579529 -50700025 + L1ME1 LINE L1 5053 5554 -612 2401 120 28 14 chr6 138579529 138579888 -50699666 + THE1B LTR MaLR 1 364 0 1808 232 80 18 chr6 138579888 138580216 -50699338 + L1ME1 LINE L1 5554 5860 -306 432 208 47 0 chr6 138580236 138580342 -50699212 + L1MA10 LINE L1 6210 6320 -14 355 214 122 77 chr6 138580373 138580569 -50698985 + MIR SINE MIR 56 260 -2 36 23 0 0 chr6 138580744 138580787 -50698767 + AT_rich Low_complexity Low_complexity 1 43 0 1859 141 7 33 chr6 138581887 138582193 -50697361 - AluSq SINE Alu -15 298 1 740 269 106 69 chr6 138583157 138583662 -50695892 - MLT1H1 LTR MaLR 0 595 41 224 238 0 0 chr6 138583701 138583743 -50695811 + (CA)n Simple_repeat Simple_repeat 2 43 0 247 211 183 0 chr6 138584354 138584425 -50695129 - MER106B DNA MER1_type -73 986 903 978 165 6 22 chr6 138585303 138585485 -50694069 + AluJb SINE Alu 134 312 0 278 352 85 11 chr6 138587775 138588075 -50691479 - L2 LINE L2 -1 3312 2942 840 255 34 17 chr6 138588255 138588494 -50691060 - MIR SINE MIR -1 261 19 923 267 165 19 chr6 138589428 138590184 -50689370 + L2 LINE L2 2452 3313 0 344 223 33 25 chr6 138590291 138590412 -50689142 + CT-rich Low_complexity Low_complexity 2 123 0 934 328 82 50 chr6 138591458 138592373 -50687181 + L2 LINE L2 1802 2745 -569 266 215 37 118 chr6 138592505 138592640 -50686914 - MER104 DNA Tc2 -32 148 25 582 261 172 45 chr6 138592728 138592996 -50686558 - LTR16A LTR ERVL -5 445 144 3771 62 16 0 chr6 138593298 138593799 -50685755 + L1PA7 LINE L1 5646 6154 0 1848 190 0 0 chr6 138593963 138594274 -50685280 + AluSx SINE Alu 1 311 -1 316 286 12 0 chr6 138594276 138594360 -50685194 - L2 LINE L2 -2553 761 677 23 0 0 0 chr6 138594817 138594840 -50684714 + AT_rich Low_complexity Low_complexity 1 23 0 3192 21 0 0 chr6 138594841 138595213 -50684341 - L1PA2 LINE L1 -1 6154 5783 184 337 12 36 chr6 138595423 138595506 -50684048 + L2 LINE L2 3177 3257 -56 198 0 0 0 chr6 138595523 138595545 -50684009 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 477 342 35 18 chr6 138596460 138596688 -50682866 + MIR SINE MIR 28 259 -3 888 259 50 42 chr6 138597547 138597906 -50681648 - MLT1D LTR MaLR 0 505 144 195 294 59 0 chr6 138598974 138599042 -50680512 + MIR3 SINE MIR 109 180 -28 189 0 0 0 chr6 138599188 138599209 -50680345 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 244 250 37 56 chr6 138600254 138600362 -50679192 + L1MEd LINE L1 256 361 -6011 1649 213 9 3 chr6 138600736 138601056 -50678498 + MLT1A1 LTR MaLR 32 353 -12 380 346 45 8 chr6 138601085 138601480 -50678074 + L1MEd LINE L1 1362 1922 -899 411 222 129 35 chr6 138601931 138602102 -50677452 + L1MEd LINE L1 2389 2575 -3807 365 347 12 58 chr6 138602223 138602638 -50676916 + L1ME LINE L1 5265 5660 -510 1001 91 0 0 chr6 138602667 138602810 -50676744 + L1MA5A LINE L1 6150 6292 -5 244 219 55 0 chr6 138602910 138602983 -50676571 + L1ME LINE L1 5723 5799 -365 205 262 33 0 chr6 138603308 138603369 -50676185 + (TA)n Simple_repeat Simple_repeat 1 63 0 848 234 37 0 chr6 138603505 138603693 -50675861 + MIR SINE MIR 63 257 -5 561 301 98 18 chr6 138603780 138604178 -50675376 - L1M4 LINE L1 -1527 4619 4190 1987 101 56 14 chr6 138604582 138604868 -50674686 - AluSc SINE Alu -11 298 1 1096 76 0 0 chr6 138604870 138605002 -50674552 - AluSq/x SINE Alu -181 132 1 246 220 21 0 chr6 138607373 138607443 -50672111 + MIR SINE MIR 60 135 -73 216 0 0 0 chr6 138607636 138607660 -50671894 + (T)n Simple_repeat Simple_repeat 1 24 0 194 61 0 30 chr6 138607795 138607828 -50671726 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 21 57 0 0 chr6 138608248 138608283 -50671271 + AT_rich Low_complexity Low_complexity 1 35 0 682 269 8 100 chr6 138608445 138608518 -50671036 - MIR SINE MIR -5 257 179 2299 92 3 7 chr6 138608518 138608824 -50670730 - AluSq SINE Alu -2 311 7 682 269 8 100 chr6 138608824 138609010 -50670544 - MIR SINE MIR -83 179 22 390 306 0 16 chr6 138609353 138609477 -50670077 + MIR SINE MIR 87 208 -54 1365 218 38 0 chr6 138609975 138610264 -50669290 - LOR1b LTR ERV1 -149 312 13 1060 277 85 26 chr6 138610888 138611523 -50668031 - L2 LINE L2 0 3313 2645 202 294 76 67 chr6 138611666 138611785 -50667769 - L2 LINE L2 -3 3310 3191 237 224 0 0 chr6 138611981 138612030 -50667524 + CT-rich Low_complexity Low_complexity 4 52 0 1854 140 3 11 chr6 138612347 138612633 -50666921 + AluSx SINE Alu 19 302 -10 246 327 82 53 chr6 138612676 138612884 -50666670 + L2 LINE L2 3054 3267 -5 310 383 71 0 chr6 138612943 138613084 -50666470 - L2 LINE L2 -7 3265 3115 219 368 61 9 chr6 138613429 138613543 -50666011 - L2 LINE L2 -568 2746 2627 668 271 138 0 chr6 138613584 138613802 -50665752 + MIR SINE MIR 14 261 -1 214 381 0 0 chr6 138613809 138613906 -50665648 - MIR SINE MIR -68 194 98 227 277 10 30 chr6 138615766 138615867 -50663687 + (TA)n Simple_repeat Simple_repeat 2 100 0 1765 156 0 4 chr6 138617057 138617327 -50662227 - AluJb SINE Alu -41 271 3 879 151 0 20 chr6 138618112 138618258 -50661296 + FLAM_C SINE Alu 1 143 0 186 169 46 0 chr6 138619426 138619491 -50660063 + (TA)n Simple_repeat Simple_repeat 2 69 0 489 269 32 23 chr6 138619565 138619737 -50659817 + MIR SINE MIR 50 222 -40 2202 121 0 0 chr6 138620173 138620510 -50659044 - AluSq SINE Alu 0 345 9 1652 151 54 68 chr6 138621672 138621970 -50657584 + THE1C LTR MaLR 9 303 -72 2355 74 3 0 chr6 138621970 138622266 -50657288 - AluY SINE Alu -14 297 1 1652 151 54 68 chr6 138622266 138622337 -50657217 + THE1C LTR MaLR 303 373 -2 9315 133 29 36 chr6 138622339 138623919 -50655635 + THE1C-int LTR MaLR 1 1568 -12 1797 139 75 33 chr6 138623924 138624284 -50655270 + THE1C LTR MaLR 1 375 0 271 310 49 76 chr6 138625324 138625508 -50654046 + MIR SINE MIR 84 262 0 22 0 0 0 chr6 138626566 138626588 -50652966 + AT_rich Low_complexity Low_complexity 1 22 0 403 370 87 5 chr6 138626609 138626817 -50652737 - MIR SINE MIR -36 226 2 321 26 0 0 chr6 138627044 138627082 -50652472 + (CA)n Simple_repeat Simple_repeat 2 39 0 449 70 0 14 chr6 138628162 138628233 -50651321 + (TG)n Simple_repeat Simple_repeat 2 71 0 205 182 23 0 chr6 138629065 138629109 -50650445 + MIR3 SINE MIR 115 159 -49 338 247 0 32 chr6 138629346 138629439 -50650115 - L1MC4 LINE L1 -1339 6703 6614 246 331 121 0 chr6 138629533 138629657 -50649897 + L1MC/D LINE L1 5615 5753 -2055 21 36 0 0 chr6 138629792 138629820 -50649734 + AT_rich Low_complexity Low_complexity 1 28 0 2317 86 0 13 chr6 138629976 138630280 -50649274 + AluY SINE Alu 1 300 -11 331 263 35 84 chr6 138630302 138630682 -50648872 + L1M4 LINE L1 3626 3983 -2163 365 333 61 40 chr6 138631174 138631402 -50648152 + MIR SINE MIR 19 251 -11 376 279 55 8 chr6 138633150 138633308 -50646246 - MIR3 SINE MIR -19 189 23 425 318 66 7 chr6 138635050 138635201 -50644353 + MIR SINE MIR 9 168 -94 259 265 60 27 chr6 138635201 138635386 -50644168 - L1ME LINE L1 -298 5823 5633 308 323 0 0 chr6 138635413 138635512 -50644042 + MIR SINE MIR 163 261 -1 29 0 0 0 chr6 138635519 138635548 -50644006 + AT_rich Low_complexity Low_complexity 1 29 0 229 309 31 87 chr6 138635986 138636274 -50643280 - MLT1-int LTR MaLR -794 577 306 1731 150 38 7 chr6 138636423 138636716 -50642838 - Tigger2 DNA MER2_type 0 2718 2417 455 305 79 25 chr6 138636998 138637392 -50642162 - L1ME LINE L1 -360 5761 5347 438 69 0 0 chr6 138637393 138637451 -50642103 + (TG)n Simple_repeat Simple_repeat 1 58 0 2000 105 7 7 chr6 138637456 138637732 -50641822 - AluSq SINE Alu -37 276 1 213 121 0 0 chr6 138638713 138638746 -50640808 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 210 342 0 13 chr6 138638949 138639025 -50640529 - MIR SINE MIR -109 99 25 405 39 0 0 chr6 138641261 138641312 -50638242 + (TG)n Simple_repeat Simple_repeat 2 52 0 626 270 118 34 chr6 138641792 138642088 -50637466 - HAL1 LINE L1 -812 1695 1375 1290 186 129 31 chr6 138642137 138642724 -50636830 + LTR48 LTR ERV1 1 542 0 25 31 0 0 chr6 138642822 138642854 -50636700 + AT_rich Low_complexity Low_complexity 1 32 0 540 131 0 0 chr6 138643325 138643409 -50636145 - MER41B LTR ERV1 -551 84 1 504 332 136 29 chr6 138643776 138644384 -50635170 - L1 LINE L1 -2040 4106 3424 893 218 86 86 chr6 138644743 138645129 -50634425 - MSTB2 LTR MaLR 0 457 72 23 33 0 0 chr6 138645157 138645187 -50634367 + AT_rich Low_complexity Low_complexity 1 30 0 205 220 34 0 chr6 138646031 138646090 -50633464 + CT-rich Low_complexity Low_complexity 3 63 0 29 0 0 0 chr6 138646780 138646809 -50632745 + AT_rich Low_complexity Low_complexity 1 29 0 2135 150 51 8 chr6 138647886 138648259 -50631295 - Tigger2 DNA MER2_type -2 2716 2328 1305 113 5 9 chr6 138648263 138648475 -50631079 - L1P3 LINE L1 -5663 212 2 199 207 122 49 chr6 138648728 138648810 -50630744 + MIR SINE MIR 174 261 -1 27 0 0 0 chr6 138649392 138649419 -50630135 + AT_rich Low_complexity Low_complexity 1 27 0 180 125 0 0 chr6 138649921 138649953 -50629601 + (CAG)n Simple_repeat Simple_repeat 2 33 0 1889 126 42 34 chr6 138650864 138651221 -50628333 + THE1B LTR MaLR 5 364 0 9963 120 46 0 chr6 138651221 138652731 -50626823 + THE1B-int LTR MaLR 1 1580 0 2143 134 31 0 chr6 138652731 138653082 -50626472 + THE1B LTR MaLR 1 362 -2 195 408 92 6 chr6 138653515 138653689 -50625865 - L2 LINE L2 -186 3086 2898 534 335 78 52 chr6 138653967 138653985 -50625569 - L2 LINE L2 -573 2741 2725 1670 211 24 53 chr6 138653985 138654439 -50625115 - LTR47B LTR ERVL -2 441 1 534 335 78 52 chr6 138654439 138654934 -50624620 - L2 LINE L2 -589 2725 2215 183 338 89 59 chr6 138655217 138655384 -50624170 - L2 LINE L2 -1217 2097 1936 1964 128 7 3 chr6 138655384 138655673 -50623881 + AluSc SINE Alu 1 290 -19 183 338 89 59 chr6 138655673 138655910 -50623644 - L2 LINE L2 -1378 1936 1681 190 362 172 20 chr6 138655959 138656360 -50623194 - L2 LINE L2 -588 2726 2265 220 206 0 48 chr6 138656621 138656684 -50622870 + CT-rich Low_complexity Low_complexity 2 61 0 2689 74 0 0 chr6 138658729 138659081 -50620473 - L1PA8 LINE L1 -5 6167 5816 240 364 50 14 chr6 138659897 138660037 -50619517 - MIR3 SINE MIR -11 197 53 25 0 0 0 chr6 138660312 138660337 -50619217 + AT_rich Low_complexity Low_complexity 1 25 0 213 200 0 40 chr6 138660593 138660643 -50618911 + CT-rich Low_complexity Low_complexity 4 51 0 24 32 0 0 chr6 138661002 138661033 -50618521 + AT_rich Low_complexity Low_complexity 1 31 0 3701 174 57 79 chr6 138662942 138663845 -50615709 - MER21A LTR ERV1 -48 883 1 619 269 75 57 chr6 138665183 138665585 -50613969 - LTR16A LTR ERVL -48 409 1 1136 155 53 35 chr6 138666752 138667036 -50612518 + L1MA4 LINE L1 6011 6299 -1 541 226 65 0 chr6 138667769 138667893 -50611661 + FLAM_A SINE Alu 1 132 -1 22 56 0 0 chr6 138669686 138669722 -50609832 + AT_rich Low_complexity Low_complexity 1 36 0 246 342 9 36 chr6 138669868 138669979 -50609575 - MIR SINE MIR -91 171 64 352 325 114 0 chr6 138671304 138671427 -50608127 + L2 LINE L2 3136 3272 0 261 346 59 52 chr6 138671683 138671836 -50607718 + L2 LINE L2 3108 3261 -11 1373 60 5 11 chr6 138672048 138672232 -50607322 + L1PA7 LINE L1 5970 6152 -2 769 240 43 88 chr6 138673040 138673369 -50606185 - L1MD1 LINE L1 -4 6238 5925 4292 234 48 39 chr6 138673373 138674528 -50605026 - L1MD1 LINE L1 -580 5779 4597 2377 80 0 13 chr6 138674528 138674841 -50604713 - AluY SINE Alu -2 309 1 4292 234 48 39 chr6 138674841 138675766 -50603788 - L1MD1 LINE L1 -1762 4597 3681 682 302 22 7 chr6 138675779 138676054 -50603500 + L1MD1 LINE L1 3371 3649 -2497 * 2105 228 96 12 chr6 138676041 138676624 -50602930 + L1ME2 LINE L1 5531 6162 -2 206 189 0 81 chr6 138676813 138676887 -50602667 + T-rich Low_complexity Low_complexity 5 72 0 21 0 0 0 chr6 138677059 138677080 -50602474 + AT_rich Low_complexity Low_complexity 1 21 0 381 161 58 0 chr6 138677467 138677554 -50602000 - MER53 DNA DNA -3 186 95 384 317 132 21 chr6 138678066 138678309 -50601245 - L1 LINE L1 -1796 4350 4081 387 308 42 0 chr6 138678309 138678452 -50601102 + MIR SINE MIR 114 262 0 429 312 89 80 chr6 138679257 138679571 -50599983 - LTR16A LTR ERVL -16 434 118 1007 349 74 24 chr6 138680069 138680856 -50598698 - HERV16 LTR ERVL -697 5067 4242 405 323 15 8 chr6 138680858 138680988 -50598566 - HERV16 LTR ERVL -4809 187 57 1112 296 75 54 chr6 138681023 138681450 -50598104 - LTR16A LTR ERVL -1 449 18 2185 123 3 40 chr6 138681450 138681799 -50597755 + MER1B DNA MER1_type 2 337 0 1112 296 75 54 chr6 138681799 138681818 -50597736 - LTR16A LTR ERVL -432 18 1 2192 72 0 85 chr6 138681970 138682301 -50597253 + AluY SINE Alu 1 303 -8 264 59 0 0 chr6 138682997 138683031 -50596523 + (GA)n Simple_repeat Simple_repeat 2 35 0 203 393 24 12 chr6 138683677 138683761 -50595793 - MIR3 SINE MIR -116 92 8 21 0 0 0 chr6 138683761 138683782 -50595772 + AT_rich Low_complexity Low_complexity 1 21 0 394 194 1 0 chr6 138683992 138684081 -50595473 - MLT1E3 LTR MaLR -2 622 502 1938 122 11 0 chr6 138684131 138684450 -50595104 + AluSx SINE Alu 1 322 0 2842 162 60 78 chr6 138685045 138685748 -50593806 - LTR8 LTR ERV1 -1 690 1 24 32 0 0 chr6 138686397 138686428 -50593126 + AT_rich Low_complexity Low_complexity 1 31 0 383 328 46 29 chr6 138686915 138687153 -50592401 + MLT1L LTR MaLR 39 280 -335 254 261 134 45 chr6 138687276 138687410 -50592144 + MLT1L LTR MaLR 466 611 -4 2192 105 7 3 chr6 138687415 138687721 -50591833 - AluSc SINE Alu -2 307 1 1544 187 3 35 chr6 138687966 138688281 -50591273 + AluJo SINE Alu 2 306 -6 1171 211 54 121 chr6 138689713 138689811 -50589743 - MLT1D LTR MaLR 0 505 402 2192 99 0 13 chr6 138689811 138690123 -50589431 + AluSc SINE Alu 1 308 -1 1171 211 54 121 chr6 138690123 138690563 -50588991 - MLT1D LTR MaLR -103 402 3 180 0 0 0 chr6 138690743 138690763 -50588791 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2039 95 3 7 chr6 138691126 138691420 -50588134 - L1PA14 LINE L1 -2 6159 5867 2307 75 0 26 chr6 138692870 138693178 -50586376 + AluY SINE Alu 1 300 -11 1667 184 13 3 chr6 138693248 138693552 -50586002 - AluJb SINE Alu -2 310 4 306 0 0 0 chr6 138693565 138693599 -50585955 + (TTA)n Simple_repeat Simple_repeat 3 36 0 40856 37 1 1 chr6 138693599 138699364 -50580190 - L1PA4 LINE L1 -18 6137 375 3059 67 0 0 chr6 138699364 138699751 -50579803 + L1PA4 LINE L1 8 394 -5752 1414 188 46 7 chr6 138699842 138700145 -50579409 - MER61A LTR ERV1 -28 315 1 206 242 75 8 chr6 138701154 138701274 -50578280 + (ATAAG)n Simple_repeat Simple_repeat 2 129 0 1045 173 0 0 chr6 138701591 138701764 -50577790 + FRAM SINE Alu 1 171 -5 1376 173 62 4 chr6 138702020 138702280 -50577274 + AluJb SINE Alu 38 312 0 1956 113 7 3 chr6 138702350 138702671 -50576883 - AluSx SINE Alu 0 322 1 217 349 23 8 chr6 138702779 138702908 -50576646 - MIR SINE MIR -71 191 61 260 351 57 69 chr6 138703891 138704223 -50575331 - L2 LINE L2 0 3272 2949 2386 51 0 3 chr6 138704223 138704515 -50575039 + AluY SINE Alu 1 291 -20 260 351 57 69 chr6 138704515 138704747 -50574807 - L2 LINE L2 -323 2949 2716 1425 162 0 4 chr6 138705622 138705851 -50573703 + AluSg/x SINE Alu 85 312 0 14899 27 3 0 chr6 138708528 138711078 -50568476 - L1PA4 LINE L1 -2 6153 3597 22 0 0 0 chr6 138711942 138711964 -50567590 + AT_rich Low_complexity Low_complexity 1 22 0 348 357 108 0 chr6 138713187 138713484 -50566070 + L2 LINE L2 2044 2372 -942 2009 135 0 0 chr6 138713596 138713885 -50565669 - AluSx SINE Alu -23 289 1 858 304 74 57 chr6 138714587 138715555 -50563999 + L1MEc LINE L1 798 1782 -4614 1825 279 109 34 chr6 138715666 138717346 -50562208 + L1MEc LINE L1 1953 3723 -2492 427 113 0 0 chr6 138717405 138717467 -50562087 + AluS SINE Alu 1 62 -256 264 386 67 14 chr6 138717586 138717946 -50561608 - HERV16 LTR ERVL -2125 3639 3261 1359 274 142 38 chr6 138717988 138718806 -50560748 - HERV16 LTR ERVL -1907 3089 2244 199 266 94 31 chr6 138719215 138719279 -50560275 + L2 LINE L2 3201 3268 -4 188 240 20 0 chr6 138719433 138719483 -50560071 + L2 LINE L2 3263 3313 0 348 270 28 117 chr6 138719985 138720311 -50559243 + L1MC4a LINE L1 5636 5932 -1876 25 75 0 0 chr6 138720438 138720491 -50559063 + AT_rich Low_complexity Low_complexity 1 53 0 219 203 0 0 chr6 138720865 138720924 -50558630 + A-rich Low_complexity Low_complexity 1 59 0 217 0 0 0 chr6 138721466 138721490 -50558064 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1383 228 0 4 chr6 138721490 138721771 -50557783 - AluJo SINE Alu -31 281 2 870 187 41 41 chr6 138721944 138722163 -50557391 + MER20 DNA MER1_type 1 219 0 224 163 23 0 chr6 138722427 138722470 -50557084 + L2 LINE L2 3263 3306 -7 22 56 0 0 chr6 138722477 138722513 -50557041 + AT_rich Low_complexity Low_complexity 1 36 0 395 356 12 6 chr6 138723191 138723351 -50556203 + MIR3 SINE MIR 47 207 -1 297 155 0 0 chr6 138724491 138724549 -50555005 + (CA)n Simple_repeat Simple_repeat 1 58 0 24 0 0 0 chr6 138726193 138726217 -50553337 + AT_rich Low_complexity Low_complexity 1 24 0 510 331 105 27 chr6 138726317 138726688 -50552866 + L3 LINE CR1 1051 1450 -127 185 215 31 77 chr6 138726689 138726754 -50552800 + MIR3 SINE MIR 125 186 -22 1735 187 0 3 chr6 138726756 138727056 -50552498 + AluJb SINE Alu 1 299 -13 308 264 9 38 chr6 138727160 138727266 -50552288 + Charlie7 DNA MER1_type 1 103 -2509 369 0 0 0 chr6 138728167 138728208 -50551346 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr6 138729855 138729884 -50549670 + AT_rich Low_complexity Low_complexity 1 29 0 32 0 0 0 chr6 138730441 138730473 -50549081 + AT_rich Low_complexity Low_complexity 1 32 0 232 229 29 0 chr6 138730601 138730671 -50548883 + (TA)n Simple_repeat Simple_repeat 1 72 0 233 276 55 35 chr6 138730983 138731128 -50548426 - L1MC/D LINE L1 -1913 5895 5748 211 254 16 16 chr6 138731802 138731865 -50547689 + MIR SINE MIR 189 251 -11 248 304 78 29 chr6 138731969 138732071 -50547483 + MIR SINE MIR 24 130 -78 534 275 82 54 chr6 138734578 138735145 -50544409 - L1MEd LINE L1 -799 1691 1023 23 68 0 0 chr6 138735183 138735227 -50544327 + AT_rich Low_complexity Low_complexity 1 44 0 25 65 0 0 chr6 138736845 138736891 -50542663 + AT_rich Low_complexity Low_complexity 1 46 0 195 42 0 0 chr6 138737355 138737379 -50542175 + (TG)n Simple_repeat Simple_repeat 2 25 0 216 67 0 0 chr6 138738174 138738204 -50541350 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 1694 173 0 18 chr6 138738204 138738476 -50541078 - AluSx SINE Alu -32 280 14 3061 96 2 7 chr6 138738850 138739296 -50540258 - L1P LINE L1 -1276 4870 4427 4259 56 7 0 chr6 138739296 138739842 -50539712 + L1PA7 LINE L1 5600 6154 0 23 0 0 0 chr6 138740170 138740193 -50539361 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr6 138740944 138740969 -50538585 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr6 138741171 138741192 -50538362 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 138742016 138742038 -50537516 + AT_rich Low_complexity Low_complexity 1 22 0 432 350 43 30 chr6 138742038 138742272 -50537282 + MIR SINE MIR 15 251 -11 388 296 81 56 chr6 138744213 138744662 -50534892 - L2 LINE L2 -213 3059 2590 886 264 9 0 chr6 138745110 138745330 -50534224 + MER58A DNA MER1_type 3 224 0 22 35 0 0 chr6 138745486 138745515 -50534039 + AT_rich Low_complexity Low_complexity 1 29 0 395 136 0 15 chr6 138748305 138748371 -50531183 - AluJ/FRAM SINE Alu -7 295 231 238 247 25 37 chr6 138748405 138748486 -50531068 - L1MC4 LINE L1 -674 7368 7289 22 0 0 0 chr6 138748863 138748885 -50530669 + AT_rich Low_complexity Low_complexity 1 22 0 612 109 52 17 chr6 138748987 138749161 -50530393 + (TA)n Simple_repeat Simple_repeat 1 180 0 180 0 0 0 chr6 138750059 138750079 -50529475 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 465 152 0 0 chr6 138750191 138750296 -50529258 + (TG)n Simple_repeat Simple_repeat 1 105 0 306 87 0 0 chr6 138750578 138750624 -50528930 + (TG)n Simple_repeat Simple_repeat 1 46 0 337 286 105 64 chr6 138750902 138751073 -50528481 - MIR SINE MIR -44 218 41 541 202 8 16 chr6 138751788 138752037 -50527517 + CT-rich Low_complexity Low_complexity 1 246 0 3626 158 107 128 chr6 138752490 138752928 -50526626 + L1MC3 LINE L1 6137 5750 -594 229 353 29 0 chr6 138752928 138753030 -50526524 + MLT1F1 LTR MaLR 35 139 -428 3626 158 107 128 chr6 138753030 138753596 -50525958 + L1MC3 LINE L1 5749 6326 -18 25 31 0 0 chr6 138754341 138754373 -50525181 + AT_rich Low_complexity Low_complexity 1 32 0 332 86 0 35 chr6 138754755 138754813 -50524741 + (TTA)n Simple_repeat Simple_repeat 1 56 0 660 237 81 47 chr6 138755976 138756187 -50523367 + MER106A DNA MER1_type 1 218 -18 2209 50 57 0 chr6 138757021 138757302 -50522252 + AluY SINE Alu 1 297 -14 33 56 0 0 chr6 138757946 138758000 -50521554 + AT_rich Low_complexity Low_complexity 1 54 0 326 333 0 0 chr6 138758907 138759006 -50520548 + (CATG)n Simple_repeat Simple_repeat 1 99 0 212 331 151 0 chr6 138759084 138759247 -50520307 - MER91A DNA MER1_type 0 190 49 776 203 68 0 chr6 138759312 138759489 -50520065 + MER5A DNA MER1_type 1 189 0 47 53 0 0 chr6 138759650 138759725 -50519829 + AT_rich Low_complexity Low_complexity 1 75 0 194 340 89 39 chr6 138763104 138763307 -50516247 + L2 LINE L2 3097 3309 -4 1986 151 55 3 chr6 138763588 138763933 -50515621 - MER47A DNA MER2_type -3 363 1 189 0 0 0 chr6 138764581 138764602 -50514952 + (T)n Simple_repeat Simple_repeat 1 21 0 180 206 29 0 chr6 138765290 138765324 -50514230 - L2 LINE L2 -30 3242 3208 * 334 283 219 11 chr6 138765295 138765482 -50514072 - MIR SINE MIR -29 233 8 412 318 25 30 chr6 138765628 138765826 -50513728 + L1ME LINE L1 5492 5688 -433 640 271 94 20 chr6 138767070 138767314 -50512240 + MIR SINE MIR 1 262 0 198 0 0 0 chr6 138767889 138767911 -50511643 + (A)n Simple_repeat Simple_repeat 1 22 0 529 282 75 6 chr6 138768113 138768287 -50511267 + LTR16A1 LTR ERVL 265 450 -7 327 297 70 16 chr6 138768401 138768529 -50511025 + L2 LINE L2 3136 3270 -2 207 0 0 0 chr6 138769623 138769646 -50509908 + (TTG)n Simple_repeat Simple_repeat 2 24 0 381 304 155 0 chr6 138769678 138769839 -50509715 - MER5A DNA MER1_type 0 189 4 230 295 54 71 chr6 138770580 138770692 -50508862 - L2 LINE L2 0 3272 3163 244 374 41 0 chr6 138771090 138771234 -50508320 - MIR SINE MIR -57 151 1 216 67 0 0 chr6 138772064 138772094 -50507460 + (A)n Simple_repeat Simple_repeat 1 30 0 818 146 15 0 chr6 138773178 138773308 -50506246 - FLAM_C SINE Alu -11 132 1 183 273 78 26 chr6 138773353 138773430 -50506124 + MIR3 SINE MIR 122 202 -6 1821 156 0 17 chr6 138774609 138774898 -50504656 + AluSx SINE Alu 1 284 -28 249 57 0 0 chr6 138774908 138774943 -50504611 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 528 318 65 14 chr6 138775445 138775659 -50503895 + MIR SINE MIR 32 256 -6 311 356 65 27 chr6 138775776 138776037 -50503517 + L2 LINE L2 2622 2892 -422 393 131 36 71 chr6 138776161 138776245 -50503309 + AluY SINE Alu 100 180 -121 936 150 25 6 chr6 138776345 138776505 -50503049 + AluY SINE Alu 130 292 -19 415 254 46 42 chr6 138777289 138777506 -50502048 - L1M4 LINE L1 -1440 4706 4489 249 313 62 27 chr6 138778037 138778149 -50501405 - L2 LINE L2 -5 3308 3193 365 276 81 17 chr6 138778149 138778323 -50501231 + LTR37B LTR ERV1 6 190 -278 217 306 0 0 chr6 138778484 138778546 -50501008 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 513 200 28 21 chr6 138778575 138778720 -50500834 + LTR37B LTR ERV1 323 468 0 180 77 0 0 chr6 138779043 138779069 -50500485 + (AATTG)n Simple_repeat Simple_repeat 4 29 0 2328 65 0 26 chr6 138780284 138780592 -50498962 + AluY SINE Alu 1 300 -11 337 258 186 8 chr6 138781290 138781414 -50498140 + MER5A DNA MER1_type 43 188 -1 353 328 17 0 chr6 138781488 138781604 -50497950 - L1ME LINE L1 -502 5619 5502 1792 173 6 25 chr6 138782363 138782681 -50496873 + AluJb SINE Alu 1 312 0 2297 53 14 11 chr6 138782729 138783035 -50496519 - AluY SINE Alu 0 307 1 1380 179 143 69 chr6 138783042 138783477 -50496077 - MLT1C LTR MaLR 0 467 1 621 288 65 18 chr6 138788793 138788963 -50490591 + MER5A DNA MER1_type 1 189 0 426 193 168 62 chr6 138789112 138789273 -50490281 - MER5B DNA MER1_type 0 178 1 1481 168 37 44 chr6 138789596 138790077 -50489477 - MSTB1 LTR MaLR 0 432 1 510 261 127 72 chr6 138790300 138790591 -50488963 - L2 LINE L2 -9 3304 2998 204 182 0 0 chr6 138792575 138792619 -50486935 + A-rich Low_complexity Low_complexity 1 44 0 1846 173 157 0 chr6 138792634 138793004 -50486550 - MSTA LTR MaLR 0 428 1 566 297 99 5 chr6 138794171 138794383 -50485171 - MIR SINE MIR -19 243 12 1902 206 22 48 chr6 138795197 138795701 -50483853 - L1M4 LINE L1 -1781 4365 3875 2818 3 0 0 chr6 138797145 138797448 -50482106 + AluYa5 SINE Alu 1 303 -8 22 35 0 0 chr6 138798463 138798492 -50481062 + AT_rich Low_complexity Low_complexity 1 29 0 193 333 26 58 chr6 138798827 138798983 -50480571 - MIR SINE MIR -46 216 66 274 357 133 7 chr6 138802096 138802494 -50477060 - L2 LINE L2 -255 3017 2566 436 228 164 138 chr6 138803490 138804026 -50475528 - MLT1K LTR MaLR -32 556 7 600 216 54 43 chr6 138804149 138804334 -50475220 + MLT1B LTR MaLR 5 191 -174 313 140 0 0 chr6 138804334 138804381 -50475173 - MLT2B3 LTR ERVL 0 520 474 2549 146 54 5 chr6 138804381 138804806 -50474748 - Tigger2 DNA MER2_type 0 2718 2273 331 235 0 0 chr6 138804797 138804865 -50474689 - Tigger2 DNA MER2_type -2650 68 1 * 2109 248 30 34 chr6 138804879 138805387 -50474167 - MLT2B3 LTR ERVL -48 506 1 774 257 12 0 chr6 138805388 138805559 -50473995 + MLT1B LTR MaLR 214 386 -4 1207 183 4 32 chr6 138805651 138805903 -50473651 - L1 LINE L1 -2316 4416 4172 1871 158 13 0 chr6 138805956 138806260 -50473294 - AluSx SINE Alu -4 308 1 972 264 51 29 chr6 138806278 138806700 -50472854 - L1 LINE L1 -5519 1134 278 917 306 65 62 chr6 138806826 138807516 -50472038 - L1M3de LINE L1 -5578 1075 567 1960 54 0 4 chr6 138807550 138807790 -50471764 + AluY SINE Alu 72 310 -1 289 283 113 0 chr6 138807881 138807987 -50471567 + MIR SINE MIR 116 233 -29 1632 218 17 15 chr6 138808011 138808372 -50471182 - MLT1A1 LTR MaLR 0 365 1 1897 161 3 37 chr6 138808427 138808749 -50470805 - AluSx SINE Alu -1 311 1 1838 180 27 0 chr6 138809154 138809488 -50470066 + MER2 DNA MER2_type 1 343 -1 183 361 30 45 chr6 138809492 138809625 -50469929 + L2 LINE L2 3176 3306 -7 311 319 116 44 chr6 138812421 138812939 -50466615 - L1MEc LINE L1 -4577 1819 1265 257 308 110 11 chr6 138813356 138813447 -50466107 + L2 LINE L2 3169 3268 -4 202 333 12 36 chr6 138813496 138813580 -50465974 - MIR3 SINE MIR -35 173 92 221 240 0 0 chr6 138813684 138813734 -50465820 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 25 65 0 0 chr6 138813885 138813931 -50465623 + AT_rich Low_complexity Low_complexity 1 46 0 2093 106 3 3 chr6 138814007 138814317 -50465237 - AluSx SINE Alu 0 310 1 351 367 13 25 chr6 138814786 138814942 -50464612 + MIR SINE MIR 1 155 -107 2283 121 19 14 chr6 138814942 138815306 -50464248 + MER47A DNA MER2_type 1 366 0 351 367 13 25 chr6 138815306 138815386 -50464168 + MIR SINE MIR 155 234 -28 302 313 122 0 chr6 138815638 138815769 -50463785 + MIR SINE MIR 105 251 -11 25 0 0 0 chr6 138816329 138816354 -50463200 + AT_rich Low_complexity Low_complexity 1 25 0 185 333 0 17 chr6 138816968 138817028 -50462526 + MIR3 SINE MIR 137 195 -13 22 0 0 0 chr6 138817354 138817376 -50462178 + AT_rich Low_complexity Low_complexity 1 22 0 188 67 33 0 chr6 138819934 138819964 -50459590 + (TA)n Simple_repeat Simple_repeat 2 32 0 237 187 55 0 chr6 138820788 138820879 -50458675 + (TA)n Simple_repeat Simple_repeat 2 97 0 873 293 131 26 chr6 138822922 138823379 -50456175 - L2 LINE L2 -1104 2210 1706 2255 98 0 10 chr6 138823381 138823676 -50455878 + AluSg SINE Alu 1 292 -18 3219 222 48 68 chr6 138823701 138824882 -50454672 - L1MC4a LINE L1 -6 7802 6645 870 268 174 39 chr6 138824891 138825506 -50454048 - L2 LINE L2 -1608 1706 1009 315 299 36 36 chr6 138826789 138826926 -50452628 - MIR3 SINE MIR -7 201 65 353 224 92 75 chr6 138827550 138827596 -50451958 - MIR SINE MIR -6 256 212 2327 101 3 0 chr6 138827596 138827903 -50451651 - AluSp SINE Alu -5 308 1 353 224 92 75 chr6 138827903 138828030 -50451524 - MIR SINE MIR -50 212 80 1585 217 75 16 chr6 138830602 138830976 -50448578 + MSTD LTR MaLR 1 396 0 239 296 91 38 chr6 138830998 138831130 -50448424 - MIR SINE MIR -75 187 49 2133 113 0 3 chr6 138832958 138833269 -50446285 + AluSq SINE Alu 1 310 0 694 281 37 100 chr6 138833827 138834225 -50445329 + MLT1I LTR MaLR 36 409 0 2695 99 5 3 chr6 138834393 138834767 -50444787 + THE1C LTR MaLR 1 375 0 705 289 119 4 chr6 138834767 138834994 -50444560 + MIR SINE MIR 6 262 0 208 225 0 0 chr6 138835888 138835928 -50443626 + CT-rich Low_complexity Low_complexity 3 42 0 1645 199 48 14 chr6 138836765 138837189 -50442365 - Charlie1b DNA MER1_type -2238 523 82 2271 97 3 7 chr6 138837189 138837499 -50442055 - AluSg SINE Alu -1 309 1 1645 199 48 14 chr6 138837499 138837512 -50442042 - Charlie1b DNA MER1_type -2679 82 71 27 49 0 0 chr6 138837669 138837710 -50441844 + AT_rich Low_complexity Low_complexity 1 41 0 807 99 0 92 chr6 138837962 138838103 -50441451 - AluSg/x SINE Alu -21 291 164 1299 64 0 279 chr6 138838410 138838783 -50440771 + LTR12 LTR ERV1 6 274 -440 230 209 75 0 chr6 138838808 138838875 -50440679 + LTR30 LTR ERV1 553 624 -98 710 122 0 0 chr6 138838875 138838995 -50440559 + LTR12 LTR ERV1 49 714 0 241 310 186 28 chr6 138840610 138840755 -50438799 + L2 LINE L2 3101 3268 -4 356 210 70 0 chr6 138840932 138841032 -50438522 + MER103 DNA DNA 11 117 -49 190 143 0 54 chr6 138841146 138841202 -50438352 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 313 355 75 34 chr6 138841450 138841715 -50437839 + L2 LINE L2 1091 1366 -1948 276 305 63 32 chr6 138841748 138841843 -50437711 + L2 LINE L2 3122 3219 -53 695 244 80 10 chr6 138842000 138842201 -50437353 - MER58C DNA MER1_type 0 215 1 423 294 46 63 chr6 138842323 138842561 -50436993 - MLT1H LTR MaLR -315 234 1 418 327 47 0 chr6 138842678 138842828 -50436726 - MIR SINE MIR -20 242 86 189 0 0 0 chr6 138843117 138843138 -50436416 + (A)n Simple_repeat Simple_repeat 1 21 0 2577 100 11 0 chr6 138843721 138844072 -50435482 + THE1A LTR MaLR 1 355 0 11251 104 11 6 chr6 138844072 138845644 -50433910 + THE1A-int LTR MaLR 1 1580 0 2458 103 14 0 chr6 138845644 138845994 -50433560 + THE1A LTR MaLR 1 355 0 267 333 120 30 chr6 138845994 138846360 -50433194 + L2 LINE L2 1545 1943 -1371 1078 236 86 17 chr6 138846363 138846664 -50432890 - MLT2B1 LTR ERVL -198 322 1 21 36 0 0 chr6 138847043 138847071 -50432483 + AT_rich Low_complexity Low_complexity 1 28 0 2252 107 3 0 chr6 138847121 138847431 -50432123 - AluSx SINE Alu -1 311 1 2170 123 0 3 chr6 138848627 138848927 -50430627 + AluSx SINE Alu 1 299 -13 335 264 94 0 chr6 138848973 138849079 -50430475 + MIR SINE MIR 26 141 -121 3756 219 26 25 chr6 138850093 138851086 -50428468 + Charlie1a DNA MER1_type 8 1001 -454 933 230 104 0 chr6 138851087 138851422 -50428132 + L1ME1 LINE L1 4960 5329 -817 21860 184 18 34 chr6 138851424 138855451 -50424103 + L1MA3 LINE L1 14 4105 -3619 2815 25 0 0 chr6 138855451 138855768 -50423786 + AluYb8 SINE Alu 1 317 -1 21860 184 18 34 chr6 138855768 138858664 -50420890 + L1MA3 LINE L1 4105 6788 -936 2200 128 0 3 chr6 138858664 138858969 -50420585 + AluSq SINE Alu 1 304 -9 21860 184 18 34 chr6 138858969 138859891 -50419663 + L1MA3 LINE L1 6788 7724 0 437 257 59 0 chr6 138859911 138860047 -50419507 + L1ME1 LINE L1 5317 5460 -706 313 188 14 0 chr6 138860068 138860137 -50419417 - L1ME1 LINE L1 -6 6160 6091 * 621 212 35 35 chr6 138860128 138860331 -50419223 - L1M4 LINE L1 -968 5178 4976 489 234 57 19 chr6 138860355 138860513 -50419041 - L1ME1 LINE L1 -106 6060 5897 2009 212 93 48 chr6 138860514 138860635 -50418919 + L1ME1 LINE L1 5457 5571 -595 1592 148 14 7 chr6 138860635 138860913 -50418641 + L1PA15 LINE L1 5886 6165 0 2009 212 93 48 chr6 138860913 138861465 -50418089 + L1ME1 LINE L1 5571 6161 -5 2089 93 40 0 chr6 138861537 138861815 -50417739 - AluSg SINE Alu -21 289 1 21 0 0 0 chr6 138862885 138862906 -50416648 + AT_rich Low_complexity Low_complexity 1 21 0 2211 74 3 0 chr6 138863959 138864244 -50415310 - L1PA8 LINE L1 -1 6171 5886 243 300 9 0 chr6 138866237 138866310 -50413244 - MIR SINE MIR -78 130 56 297 372 60 42 chr6 138867302 138867499 -50412055 + L2 LINE L2 228 435 -2879 342 45 0 0 chr6 138867499 138867543 -50412011 + (TG)n Simple_repeat Simple_repeat 1 44 0 297 372 60 42 chr6 138867543 138867678 -50411876 + L2 LINE L2 435 566 -2748 312 347 88 6 chr6 138867860 138868030 -50411524 - L2 LINE L2 -459 2855 2672 228 295 0 13 chr6 138868219 138868297 -50411257 + MIR SINE MIR 146 222 -40 338 330 101 52 chr6 138868702 138869454 -50410100 - L2 LINE L2 -1307 2007 1219 251 118 0 57 chr6 138870921 138870968 -50408586 - MLT2C2 LTR ERVL 0 464 416 396 40 0 0 chr6 138870968 138871018 -50408536 + (TG)n Simple_repeat Simple_repeat 2 51 0 251 118 0 57 chr6 138871018 138871037 -50408517 - MLT2C2 LTR ERVL -48 416 340 1830 167 127 41 chr6 138871079 138871521 -50408033 - MLT2B1 LTR ERVL -40 480 1 235 105 0 0 chr6 138871638 138871676 -50407878 - MER53 DNA DNA -82 107 70 320 157 29 0 chr6 138871698 138871768 -50407786 + MER53 DNA DNA 118 189 0 231 277 18 80 chr6 138872090 138872202 -50407352 - MIR3 SINE MIR -7 201 97 411 279 91 19 chr6 138872765 138872919 -50406635 - MLT1I LTR MaLR -188 221 57 21 0 0 0 chr6 138872983 138873004 -50406550 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr6 138874690 138874739 -50404815 + AT_rich Low_complexity Low_complexity 1 49 0 302 309 51 39 chr6 138876952 138877130 -50402424 - L1M4 LINE L1 -3026 3120 2941 350 264 161 13 chr6 138877343 138877498 -50402056 - MIR SINE MIR -6 256 79 367 214 145 0 chr6 138877990 138878107 -50401447 + MER94 DNA DNA 1 134 0 49 18 0 0 chr6 138878905 138878961 -50400593 + AT_rich Low_complexity Low_complexity 1 56 0 325 263 68 53 chr6 138879155 138879288 -50400266 + L2 LINE L2 3178 3312 -1 215 331 31 47 chr6 138879601 138879728 -50399826 - L2 LINE L2 -10 3303 3179 687 293 113 13 chr6 138881546 138881903 -50397651 - MER57A LTR ERV1 0 403 1 201 196 0 0 chr6 138881981 138882027 -50397527 + (TA)n Simple_repeat Simple_repeat 2 47 0 2111 172 14 0 chr6 138882027 138882387 -50397167 + MER47A DNA MER2_type 2 366 0 185 373 7 42 chr6 138882529 138882671 -50396883 + L2 LINE L2 3136 3272 0 562 320 52 30 chr6 138882814 138883083 -50396471 - Charlie8 DNA MER1_type -2140 277 3 434 294 126 38 chr6 138884106 138884344 -50395210 + MIR SINE MIR 1 259 -3 227 357 8 70 chr6 138884538 138884667 -50394887 + L2 LINE L2 3150 3270 -2 207 0 0 0 chr6 138885666 138885689 -50393865 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2097 70 4 0 chr6 138885692 138885963 -50393591 - L1PA8 LINE L1 -16 6156 5885 24 0 0 0 chr6 138886449 138886473 -50393081 + AT_rich Low_complexity Low_complexity 1 24 0 318 355 101 24 chr6 138886852 138887021 -50392533 + MIR3 SINE MIR 4 185 -23 349 289 52 0 chr6 138888084 138888219 -50391335 + L2 LINE L2 3171 3312 -1 2203 97 0 0 chr6 138888431 138888719 -50390835 + AluSx SINE Alu 3 290 -22 198 305 89 61 chr6 138889008 138889221 -50390333 + L2 LINE L2 2231 2449 -865 236 312 89 13 chr6 138889427 138889584 -50389970 - L1ME LINE L1 -4346 1915 1747 762 271 12 37 chr6 138889651 138889976 -50389578 + L1ME LINE L1 506 822 -5248 695 256 76 41 chr6 138889965 138890281 -50389273 - L1ME LINE L1 -4949 1131 805 * 700 247 40 27 chr6 138890371 138890669 -50388885 - L1ME LINE L1 -5693 377 2 21 36 0 0 chr6 138890673 138890701 -50388853 + AT_rich Low_complexity Low_complexity 1 28 0 2076 53 34 0 chr6 138890705 138891011 -50388543 - AluY SINE Alu 0 352 38 555 303 110 18 chr6 138891282 138891510 -50388044 + MIR SINE MIR 11 259 -3 219 409 0 31 chr6 138891667 138891794 -50387760 + L2 LINE L2 2936 3058 -214 29 60 0 0 chr6 138892093 138892143 -50387411 + AT_rich Low_complexity Low_complexity 1 50 0 2147 109 0 0 chr6 138892480 138892788 -50386766 + AluSq SINE Alu 1 308 0 28 0 0 0 chr6 138893698 138893726 -50385828 + AT_rich Low_complexity Low_complexity 1 28 0 403 294 81 60 chr6 138894111 138894359 -50385195 + MIR SINE MIR 2 254 -8 180 152 0 30 chr6 138894669 138894702 -50384852 - MIR SINE MIR -117 145 114 788 218 6 17 chr6 138895310 138895489 -50384065 - MER5B DNA MER1_type 0 178 2 244 224 145 13 chr6 138895622 138895698 -50383856 - MLT1K LTR MaLR -48 540 455 700 247 113 14 chr6 138896281 138896556 -50382998 - MLT1C LTR MaLR -5 462 161 3843 157 94 21 chr6 138896590 138897357 -50382197 - LTR1B LTR ERV1 -3 823 1 473 250 25 8 chr6 138897359 138897479 -50382075 - MLT1C LTR MaLR -379 126 5 447 292 69 84 chr6 138897889 138898307 -50381247 - MLT1K LTR MaLR -26 562 151 22 0 0 0 chr6 138899146 138899168 -50380386 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr6 138899999 138900025 -50379529 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 256 284 42 21 chr6 138900075 138900170 -50379384 - MIR SINE MIR -146 116 20 1450 45 0 6 chr6 138900241 138900420 -50379134 - L1PA3 LINE L1 -3 6152 5975 339 375 0 42 chr6 138901012 138901156 -50378398 + MER91A DNA MER1_type 1 138 -58 1842 166 0 0 chr6 138901284 138901574 -50377980 + AluSx SINE Alu 3 292 -20 504 296 0 28 chr6 138902179 138902358 -50377196 + (CA)n Simple_repeat Simple_repeat 1 174 0 12862 192 43 49 chr6 138908073 138909128 -50370426 + L1MA5 LINE L1 1245 2305 -4637 207 0 0 0 chr6 138909128 138909151 -50370403 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 12862 192 43 49 chr6 138909151 138912907 -50366647 + L1MA5 LINE L1 2305 6083 -859 2153 104 17 0 chr6 138912907 138913205 -50366349 + AluSc SINE Alu 1 303 -6 12862 192 43 49 chr6 138913205 138913665 -50365889 + L1MA5 LINE L1 6083 6471 -471 1852 120 58 4 chr6 138913665 138913940 -50365614 + AluSg SINE Alu 5 294 -16 12862 192 43 49 chr6 138913940 138914410 -50365144 + L1MA5 LINE L1 6471 6942 0 265 129 16 16 chr6 138915142 138915204 -50364350 + CT-rich Low_complexity Low_complexity 3 64 0 1998 127 16 25 chr6 138915838 138916153 -50363401 - AluSx SINE Alu 0 312 1 2136 101 0 13 chr6 138918697 138919003 -50360551 - AluSc SINE Alu -7 302 1 314 298 166 61 chr6 138919455 138919817 -50359737 + HAL1 LINE L1 217 616 -1891 458 271 34 11 chr6 138919897 138920074 -50359480 + HAL1 LINE L1 733 913 -1594 512 285 36 76 chr6 138920089 138920391 -50359163 + L2 LINE L2 2940 3229 -84 524 265 101 43 chr6 138920437 138920875 -50358679 + HAL1 LINE L1 913 1375 -1132 2142 138 0 0 chr6 138920966 138921277 -50358277 + AluSx SINE Alu 1 311 -1 774 120 8 2 chr6 138921564 138921823 -50357731 + AluSx SINE Alu 3 309 -1 436 246 5 81 chr6 138921964 138922175 -50357379 + HAL1 LINE L1 1451 1645 -862 279 235 51 16 chr6 138922245 138922354 -50357200 - MER31B LTR ERV1 0 466 376 2269 223 32 2 chr6 138922354 138922826 -50356728 - MER67D LTR ERV1 -28 486 1 4427 246 38 35 chr6 138923120 138924735 -50354819 + L1M4 LINE L1 2814 4421 -1725 874 219 198 44 chr6 138924735 138925078 -50354476 - MSTD LTR MaLR 0 396 1 6760 235 30 47 chr6 138925078 138926837 -50352717 - MSTD-int LTR MaLR -4 1731 2 1695 216 10 48 chr6 138926839 138927251 -50352303 - MSTD LTR MaLR 0 396 1 4427 246 38 35 chr6 138927251 138928067 -50351487 + L1M4 LINE L1 4421 5255 -891 21 57 0 0 chr6 138928078 138928113 -50351441 + AT_rich Low_complexity Low_complexity 1 35 0 972 150 6 0 chr6 138928122 138928289 -50351265 + L1M LINE L1 5260 5427 -906 410 270 43 39 chr6 138928380 138928613 -50350941 + HAL1 LINE L1 2261 2494 -13 1680 190 88 32 chr6 138928840 138929282 -50350272 + MLT1C LTR MaLR 1 467 0 33 25 0 0 chr6 138929396 138929436 -50350118 + AT_rich Low_complexity Low_complexity 1 40 0 476 211 0 0 chr6 138929826 138929916 -50349638 + MER81 DNA DNA 1 90 -24 204 97 0 0 chr6 138933787 138933818 -50345736 + (TG)n Simple_repeat Simple_repeat 2 32 0 241 367 49 22 chr6 138933901 138934127 -50345427 - MLT1I LTR MaLR -105 304 73 24 0 0 0 chr6 138936596 138936620 -50342934 + AT_rich Low_complexity Low_complexity 1 24 0 1895 235 152 61 chr6 138937336 138937444 -50342110 + Charlie2a DNA MER1_type 1479 1576 -1286 2110 101 3 24 chr6 138937444 138937742 -50341812 + AluSg SINE Alu 1 292 -18 1895 235 152 61 chr6 138937742 138938302 -50341252 + Charlie2a DNA MER1_type 1576 2083 -779 1826 161 0 0 chr6 138938302 138938601 -50340953 + AluSx SINE Alu 11 309 -3 1895 235 152 61 chr6 138938601 138938850 -50340704 + Charlie2a DNA MER1_type 2083 2308 -554 2516 0 0 0 chr6 138938850 138939123 -50340431 + AluYa5 SINE Alu 39 311 0 1895 235 152 61 chr6 138939123 138939371 -50340183 + Charlie2a DNA MER1_type 2308 2753 -109 1508 162 36 7 chr6 138939376 138939684 -50339870 + L1 LINE L1 4554 4870 -1276 22 56 0 0 chr6 138941675 138941711 -50337843 + AT_rich Low_complexity Low_complexity 1 36 0 670 301 168 6 chr6 138943557 138943873 -50335681 - L2 LINE L2 0 3313 2947 528 67 13 13 chr6 138944323 138944398 -50335156 - MADE1 DNA Mariner -1 79 5 333 0 0 0 chr6 138944944 138944981 -50334573 + (TG)n Simple_repeat Simple_repeat 2 38 0 236 197 66 0 chr6 138947113 138947174 -50332380 + MIR SINE MIR 108 172 -90 11340 204 41 20 chr6 138947176 138950890 -50328664 - L1MB1 LINE L1 0 6168 2379 802 191 13 7 chr6 138950904 138951056 -50328498 - FRAM SINE Alu -16 160 8 3037 262 51 38 chr6 138951080 138951252 -50328302 - L1M1 LINE L1 -3923 2228 2060 213 39 0 0 chr6 138951252 138951278 -50328276 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3037 262 51 38 chr6 138951278 138951289 -50328265 - L1M1 LINE L1 -4091 2060 2051 2120 100 0 0 chr6 138951289 138951569 -50327985 - AluSx SINE Alu -32 280 1 3037 262 51 38 chr6 138951569 138953196 -50326358 - L1M1 LINE L1 -4100 2051 393 925 294 48 56 chr6 138953358 138953989 -50325565 - L1M1 LINE L1 -5378 513 2 23 0 0 0 chr6 138955233 138955256 -50324298 + AT_rich Low_complexity Low_complexity 1 23 0 305 296 23 11 chr6 138955326 138955414 -50324140 - MIR3 SINE MIR -15 193 105 22 56 0 0 chr6 138956426 138956462 -50323092 + AT_rich Low_complexity Low_complexity 1 36 0 778 239 34 0 chr6 138958606 138958782 -50320772 + MER5A DNA MER1_type 7 188 -1 219 375 0 23 chr6 138959969 138960057 -50319497 - MIR3 SINE MIR -30 178 93 1954 217 19 62 chr6 138960114 138960551 -50319003 - MLT1E LTR MaLR 0 593 181 2465 149 49 0 chr6 138960551 138960959 -50318595 - MSTA LTR MaLR 0 428 1 1954 217 19 62 chr6 138960959 138961052 -50318502 - MLT1E LTR MaLR -412 181 86 2744 96 20 5 chr6 138961052 138961450 -50318104 + MLT2A1 LTR ERVL 1 404 -40 311 149 39 50 chr6 138961467 138961648 -50317906 + (TA)n Simple_repeat Simple_repeat 1 179 0 41 0 0 0 chr6 138961761 138961802 -50317752 + AT_rich Low_complexity Low_complexity 1 41 0 397 141 45 28 chr6 138961802 138961979 -50317575 + (TA)n Simple_repeat Simple_repeat 1 180 0 384 54 0 18 chr6 138961979 138961991 -50317563 + MLT2A1 LTR ERVL 390 401 -43 357 24 0 0 chr6 138961991 138962033 -50317521 + (CA)n Simple_repeat Simple_repeat 2 43 0 384 54 0 18 chr6 138962033 138962076 -50317478 + MLT2A1 LTR ERVL 401 444 0 268 159 0 0 chr6 138962105 138962149 -50317405 - MLT1E LTR MaLR -549 44 1 5878 209 43 7 chr6 138962573 138964862 -50314692 - L1MC1 LINE L1 -18 6315 3960 242 150 50 17 chr6 138965246 138965306 -50314248 + GA-rich Low_complexity Low_complexity 4 65 0 21 0 0 0 chr6 138966454 138966475 -50313079 + AT_rich Low_complexity Low_complexity 1 21 0 2070 108 7 3 chr6 138966782 138967077 -50312477 + AluY SINE Alu 1 296 -15 1796 163 51 0 chr6 138967384 138967715 -50311839 + MER7A DNA MER2_type 1 346 0 224 225 63 92 chr6 138967801 138967943 -50311611 - L2 LINE L2 -180 3092 2955 1988 157 32 6 chr6 138970029 138970654 -50308900 - MER39 LTR ERV1 0 707 3 21 36 0 0 chr6 138971289 138971317 -50308237 + AT_rich Low_complexity Low_complexity 1 28 0 412 333 8 8 chr6 138973310 138973433 -50306121 + MIR SINE MIR 23 145 -63 401 294 196 20 chr6 138973463 138973810 -50305744 - MLT1G1 LTR MaLR -30 565 118 2750 118 26 5 chr6 138973810 138974227 -50305327 + MSTA LTR MaLR 3 428 0 401 294 196 20 chr6 138974227 138974332 -50305222 - MLT1G1 LTR MaLR -477 118 33 252 0 0 0 chr6 138975258 138975286 -50304268 + (CA)n Simple_repeat Simple_repeat 2 29 0 24 0 0 0 chr6 138975435 138975459 -50304095 + AT_rich Low_complexity Low_complexity 1 24 0 339 25 0 0 chr6 138975525 138975565 -50303989 + (CA)n Simple_repeat Simple_repeat 2 41 0 34503 30 1 0 chr6 138977298 138982253 -50297301 + L1PA2 LINE L1 1197 6155 0 341 226 151 19 chr6 138982982 138983088 -50296466 - MIR SINE MIR -15 247 128 516 184 96 0 chr6 138983139 138983264 -50296290 + L1MD2 LINE L1 6145 6281 -78 5083 183 22 55 chr6 138983297 138984467 -50295087 + L1MC3 LINE L1 5588 6719 -1066 41872 38 31 1 chr6 138984567 138989950 -50289604 - L1P1 LINE L1 -608 5547 1 230 219 281 10 chr6 138990097 138990193 -50289361 + L3 LINE CR1 640 761 -816 505 319 59 10 chr6 138990196 138990400 -50289154 - MIR SINE MIR 0 262 49 710 309 221 17 chr6 138990485 138991015 -50288539 + L3 LINE CR1 859 1496 -81 200 260 20 0 chr6 138992861 138992911 -50286643 + CT-rich Low_complexity Low_complexity 1 51 0 649 268 270 14 chr6 138993595 138994115 -50285439 + L2 LINE L2 2650 3313 0 1426 205 21 9 chr6 138995184 138995520 -50284034 - L1MB7 LINE L1 -9 6175 5836 686 221 18 5 chr6 138995622 138995801 -50283753 - L1MB7 LINE L1 -320 5801 5636 242 271 59 12 chr6 138995851 138995936 -50283618 + MIR SINE MIR 54 142 -120 186 103 0 0 chr6 138996775 138996804 -50282750 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2425 34 41 0 chr6 138998334 138998629 -50280925 + AluY SINE Alu 1 307 -4 26 0 0 0 chr6 138998756 138998782 -50280772 + AT_rich Low_complexity Low_complexity 1 26 0 3237 155 17 14 chr6 138999000 138999581 -50279973 - L1MB2 LINE L1 0 6171 5589 1401 185 14 77 chr6 138999581 138999934 -50279620 - MER1B DNA MER1_type 0 339 3 782 218 19 0 chr6 138999937 139000093 -50279461 - L1MB2 LINE L1 -589 5594 5436 181 282 0 0 chr6 139000183 139000222 -50279332 + MER5A DNA MER1_type 96 134 -55 278 67 22 0 chr6 139002733 139002778 -50276776 + (GA)n Simple_repeat Simple_repeat 1 46 0 248 375 80 33 chr6 139003615 139003951 -50275603 + L3 LINE CR1 20 371 -1206 547 274 55 18 chr6 139004324 139004488 -50275066 - MIR SINE MIR -47 215 46 4633 20 2 0 chr6 139004959 139005497 -50274057 - L1PA2 LINE L1 -3 6152 5614 931 182 119 55 chr6 139005599 139005732 -50273822 + L1MC3 LINE L1 6711 6834 -951 288 0 0 0 chr6 139005732 139005764 -50273790 + (CA)n Simple_repeat Simple_repeat 1 32 0 931 182 119 55 chr6 139005764 139005883 -50273671 + L1MC3 LINE L1 6834 6979 -806 341 330 130 9 chr6 139005974 139006189 -50273365 + L2 LINE L2 2595 2835 -479 355 309 113 18 chr6 139006911 139007079 -50272475 + MIR SINE MIR 36 219 -43 10013 131 42 10 chr6 139007181 139008813 -50270741 + Tigger1 DNA MER2_type 2 1686 -732 2449 108 0 14 chr6 139008816 139009169 -50270385 + THE1C LTR MaLR 1 348 -27 3337 78 81 95 chr6 139009174 139009754 -50269800 + THE1C-int LTR MaLR 1 572 -1008 33 56 0 0 chr6 139009985 139010039 -50269515 + AT_rich Low_complexity Low_complexity 1 54 0 296 326 156 8 chr6 139010358 139010533 -50269021 + MIR SINE MIR 15 212 -50 203 156 0 0 chr6 139011062 139011094 -50268460 + (TG)n Simple_repeat Simple_repeat 1 32 0 1372 313 104 14 chr6 139011966 139012118 -50267436 - L2 LINE L2 -9 3304 3167 243 0 0 0 chr6 139012118 139012145 -50267409 + (TG)n Simple_repeat Simple_repeat 1 27 0 1372 313 104 14 chr6 139012145 139013019 -50266535 - L2 LINE L2 -146 3167 2175 2117 188 69 59 chr6 139013813 139014323 -50265231 + MLT2B2 LTR ERVL 1 515 0 273 348 0 11 chr6 139014648 139014740 -50264814 + L2 LINE L2 3204 3294 -19 575 283 61 6 chr6 139014768 139014948 -50264606 + MIR SINE MIR 11 200 -62 21 0 0 0 chr6 139017260 139017281 -50262273 + AT_rich Low_complexity Low_complexity 1 21 0 406 256 51 22 chr6 139018275 139018412 -50261142 + L1ME4a LINE L1 5981 6121 0 618 273 7 13 chr6 139018440 139018594 -50260960 + MIR3 SINE MIR 54 206 -2 445 214 133 17 chr6 139019623 139019796 -50259758 - MER5C DNA MER1_type -44 280 88 224 259 37 0 chr6 139019956 139020010 -50259544 + L2 LINE L2 3217 3272 0 1904 260 107 9 chr6 139020546 139021116 -50258438 - MLT1E2 LTR MaLR 0 626 1 215 331 147 13 chr6 139021480 139021637 -50257917 + L2 LINE L2 2804 2981 -291 423 309 127 23 chr6 139021675 139021895 -50257659 + MIR SINE MIR 20 262 0 269 371 79 50 chr6 139021891 139022131 -50257423 + L2 LINE L2 2977 3223 -49 * 459 0 0 0 chr6 139022165 139022216 -50257338 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 1704 167 22 67 chr6 139022737 139023129 -50256425 - MER67C LTR ERV1 -245 269 3 1200 189 157 12 chr6 139023366 139023482 -50256072 + AluJo SINE Alu 1 99 -203 360 0 0 0 chr6 139023482 139023522 -50256032 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 1200 189 157 12 chr6 139023522 139023653 -50255901 + AluJo SINE Alu 99 284 -18 219 114 0 0 chr6 139024197 139024232 -50255322 + (TG)n Simple_repeat Simple_repeat 2 36 0 5737 98 2 30 chr6 139026102 139026602 -50252952 + L1PA13 LINE L1 5308 5775 -388 1461 339 32 72 chr6 139026602 139027074 -50252480 - MLT2A2 LTR ERVL 0 453 1 5737 98 2 30 chr6 139027074 139027449 -50252105 + L1PA13 LINE L1 5775 6159 -4 180 0 0 0 chr6 139027593 139027613 -50251941 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 21 36 0 0 chr6 139027694 139027722 -50251832 + AT_rich Low_complexity Low_complexity 1 28 0 692 194 16 0 chr6 139028083 139028212 -50251342 + FLAM_C SINE Alu 2 132 -1 1562 157 148 21 chr6 139029799 139030130 -50249424 + MLT1A2 LTR MaLR 2 374 0 30 27 0 0 chr6 139030985 139031022 -50248532 + AT_rich Low_complexity Low_complexity 1 37 0 346 272 112 41 chr6 139031038 139031157 -50248397 + L2 LINE L2 2961 3097 -216 612 0 0 0 chr6 139031157 139031225 -50248329 + (CA)n Simple_repeat Simple_repeat 2 69 0 346 272 112 41 chr6 139031225 139031274 -50248280 + L2 LINE L2 3097 3141 -172 599 183 0 0 chr6 139031280 139031384 -50248170 + MSTD LTR MaLR 1 104 -292 2057 97 46 40 chr6 139031647 139031998 -50247556 + L1PA13 LINE L1 5811 6163 0 30 0 0 0 chr6 139032037 139032067 -50247487 + AT_rich Low_complexity Low_complexity 1 30 0 372 238 24 82 chr6 139032351 139032557 -50246997 + L2 LINE L2 3120 3313 0 2019 155 2 70 chr6 139033632 139034046 -50245508 - MLT1B LTR MaLR -2 388 3 1360 136 46 7 chr6 139034551 139034806 -50244748 + L1MA8 LINE L1 5829 5963 -202 2234 125 94 8 chr6 139034818 139035202 -50244352 - MSTA LTR MaLR -11 417 1 786 184 63 11 chr6 139035202 139035392 -50244162 + L1MA8 LINE L1 6085 6284 -7 23 0 0 0 chr6 139035395 139035418 -50244136 + AT_rich Low_complexity Low_complexity 1 23 0 782 231 48 39 chr6 139035708 139036125 -50243429 + Charlie4a DNA MER1_type 36 505 -3 875 210 6 30 chr6 139037193 139037360 -50242194 - FRAM SINE Alu -3 163 1 6022 62 6 11 chr6 139037654 139038453 -50241101 + L1PA12 LINE L1 1268 2214 -5370 473 31 0 15 chr6 139038502 139038567 -50240987 + L1PA12 LINE L1 2412 2475 -5109 2238 83 13 3 chr6 139040625 139040926 -50238628 - AluSq SINE Alu -9 304 1 251 349 85 0 chr6 139041555 139041684 -50237870 + L2 LINE L2 3159 3298 -15 241 171 0 43 chr6 139041728 139041798 -50237756 + (TTAAA)n Simple_repeat Simple_repeat 1 67 0 334 319 128 22 chr6 139045002 139045315 -50234239 + L1MC4a LINE L1 5564 5909 -1899 215 286 89 89 chr6 139045533 139045746 -50233808 - L2 LINE L2 -236 3036 2824 386 296 102 48 chr6 139045914 139046249 -50233305 - L2 LINE L2 -729 2585 2233 209 309 99 49 chr6 139046252 139046414 -50233140 + L2 LINE L2 1754 1923 -1391 726 267 11 0 chr6 139046528 139046708 -50232846 + L1PB4 LINE L1 5974 6155 -1 2135 269 14 29 chr6 139047612 139048283 -50231271 - L2 LINE L2 -339 2933 2274 2099 143 0 0 chr6 139048306 139048607 -50230947 + AluSq SINE Alu 1 301 -12 22 0 0 0 chr6 139051125 139051147 -50228407 + AT_rich Low_complexity Low_complexity 1 22 0 968 274 65 0 chr6 139051315 139051560 -50227994 + MIR SINE MIR 2 262 0 336 83 0 0 chr6 139051942 139051990 -50227564 + (CA)n Simple_repeat Simple_repeat 1 48 0 30 27 0 0 chr6 139052501 139052538 -50227016 + AT_rich Low_complexity Low_complexity 1 37 0 1223 150 9 35 chr6 139053017 139053243 -50226311 + AluSg/x SINE Alu 70 289 -23 297 0 0 0 chr6 139053243 139053276 -50226278 + (GA)n Simple_repeat Simple_repeat 1 33 0 411 184 0 48 chr6 139053276 139053379 -50226175 + GA-rich Low_complexity Low_complexity 4 101 0 791 288 31 67 chr6 139053602 139053960 -50225594 + MLT1H LTR MaLR 203 547 -2 709 212 43 83 chr6 139053964 139054242 -50225312 + L1ME2 LINE L1 5782 6048 -116 329 290 88 33 chr6 139055182 139055423 -50224131 + MIR SINE MIR 6 262 0 250 273 65 58 chr6 139056310 139056449 -50223105 - L3 LINE CR1 -1133 444 305 3144 186 23 16 chr6 139058148 139058832 -50220722 - L1MD1 LINE L1 0 6242 5554 4085 218 104 60 chr6 139058837 139059983 -50219571 - L1MDa LINE L1 -4785 1755 375 195 42 0 0 chr6 139059983 139060007 -50219547 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4085 218 104 60 chr6 139060007 139060382 -50219172 - L1MDa LINE L1 -6165 375 18 21 0 0 0 chr6 139060677 139060698 -50218856 + AT_rich Low_complexity Low_complexity 1 21 0 687 88 9 18 chr6 139061219 139061333 -50218221 + L1PA13 LINE L1 6048 6160 -3 407 261 167 28 chr6 139062157 139062337 -50217217 + MER20 DNA MER1_type 1 205 -14 2564 99 11 11 chr6 139062402 139062777 -50216777 - THE1C LTR MaLR 0 375 1 391 349 126 26 chr6 139066899 139067329 -50212225 - L2 LINE L2 -554 2760 2288 291 240 167 69 chr6 139067831 139068035 -50211519 - MER74B LTR ERVL -42 580 357 1827 218 8 3 chr6 139069561 139069924 -50209630 - MLT1A1 LTR MaLR 0 365 1 708 186 86 10 chr6 139070146 139070432 -50209122 - MLT1B LTR MaLR 0 390 6 189 0 0 0 chr6 139071166 139071187 -50208367 + (A)n Simple_repeat Simple_repeat 1 21 0 317 153 14 0 chr6 139071974 139072046 -50207508 + CT-rich Low_complexity Low_complexity 2 74 0 316 0 45 0 chr6 139072047 139072091 -50207463 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 236 281 21 5 chr6 139072730 139072814 -50206740 - MIR SINE MIR -87 121 36 311 302 23 0 chr6 139072858 139072944 -50206610 + L2 LINE L2 3185 3272 0 186 43 0 0 chr6 139074814 139074837 -50204717 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 414 320 53 13 chr6 139075309 139075459 -50204095 - MIR3 SINE MIR 0 208 53 506 318 84 19 chr6 139075518 139075826 -50203728 - L2 LINE L2 -4 3309 2982 22108 30 3 0 chr6 139077352 139080795 -50198759 + L1PA3 LINE L1 2694 6147 -8 4950 19 10 2 chr6 139080795 139080818 -50198736 + L1P LINE L1 2694 6164 -743 977 89 20 0 chr6 139081897 139082043 -50197511 + L1MA10 LINE L1 6186 6334 0 627 256 63 43 chr6 139082530 139082737 -50196817 - L2 LINE L2 -5 3308 3098 232 289 147 6 chr6 139083746 139083902 -50195652 + MIR SINE MIR 35 212 -50 528 93 0 0 chr6 139085374 139085449 -50194105 + (TA)n Simple_repeat Simple_repeat 2 76 0 1911 125 18 4 chr6 139085449 139085729 -50193825 - AluSx SINE Alu -28 284 1 400 298 168 6 chr6 139086049 139086210 -50193344 - MIR SINE MIR -70 192 6 2938 156 18 2 chr6 139086263 139086770 -50192784 + L1MC1 LINE L1 5814 6328 -5 786 236 108 0 chr6 139087099 139087294 -50192260 - MLT1G1 LTR MaLR 0 590 375 897 225 31 14 chr6 139087297 139087519 -50192035 - MER30 DNA MER1_type -4 226 1 1102 101 38 0 chr6 139087878 139088037 -50191517 - MER30 DNA MER1_type -63 167 3 1390 241 62 35 chr6 139088056 139088430 -50191124 - MLT1G1 LTR MaLR -211 384 1 338 175 309 0 chr6 139089495 139089592 -50189962 - MER94 DNA DNA -7 127 1 188 374 36 36 chr6 139090258 139090397 -50189157 + L2 LINE L2 2620 2758 -556 229 294 110 37 chr6 139090444 139090553 -50189001 - L2 LINE L2 -24 3289 3173 599 296 58 33 chr6 139090939 139091182 -50188372 + MIR SINE MIR 12 260 -2 2159 164 6 0 chr6 139091311 139091635 -50187919 + MER1B DNA MER1_type 14 339 0 2245 127 0 0 chr6 139091694 139092002 -50187552 + AluSx SINE Alu 1 308 -4 22 35 0 0 chr6 139092144 139092173 -50187381 + AT_rich Low_complexity Low_complexity 1 29 0 20673 48 3 3 chr6 139092517 139095077 -50184477 - L1P LINE L1 -3584 2562 1 457 340 32 16 chr6 139095465 139095650 -50183904 + MIR SINE MIR 28 215 -47 275 206 0 32 chr6 139096894 139096957 -50182597 + Alu SINE Alu 231 291 -9 180 0 0 0 chr6 139097267 139097287 -50182267 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 186 167 0 0 chr6 139097537 139097573 -50181981 + (CA)n Simple_repeat Simple_repeat 2 37 0 4913 127 12 32 chr6 139102948 139103799 -50175755 + L1MA8 LINE L1 5441 6274 -17 2457 173 37 88 chr6 139103871 139104427 -50175127 - MER45R DNA AcHobo 0 1581 1061 1731 119 0 0 chr6 139104427 139104663 -50174891 + AluSx SINE Alu 52 287 -25 2457 173 37 88 chr6 139104663 139104752 -50174802 - MER45R DNA AcHobo -520 1061 969 188 67 33 0 chr6 139104829 139104859 -50174695 + (TTTAA)n Simple_repeat Simple_repeat 1 31 0 42 71 0 0 chr6 139104862 139104946 -50174608 + AT_rich Low_complexity Low_complexity 1 84 0 2725 220 71 73 chr6 139104949 139105912 -50173642 - MER45R DNA AcHobo -620 961 1 203 340 10 31 chr6 139106999 139107096 -50172458 + L3b LINE CR1 1355 1449 -134 391 127 16 0 chr6 139107816 139107879 -50171675 - MLT1D LTR MaLR -2 503 440 1767 172 32 101 chr6 139107892 139108358 -50171196 + MLT1D LTR MaLR 3 436 -69 1857 23 0 0 chr6 139108361 139108577 -50170977 + L1PA3 LINE L1 5940 6155 0 2041 149 0 3 chr6 139108707 139109016 -50170538 + AluSx SINE Alu 1 308 -4 296 342 25 8 chr6 139109975 139110095 -50169459 - L3b LINE CR1 -182 1401 1280 348 83 0 0 chr6 139110386 139110434 -50169120 + (CA)n Simple_repeat Simple_repeat 2 49 0 343 322 99 36 chr6 139111710 139112014 -50167540 + L2 LINE L2 417 739 -2575 253 321 0 92 chr6 139112370 139112399 -50167155 + MIR3 SINE MIR 72 102 -106 2834 86 11 0 chr6 139112399 139112770 -50166784 + THE1C LTR MaLR 1 375 0 253 321 0 92 chr6 139112770 139112871 -50166683 + MIR3 SINE MIR 102 190 -18 9248 17 0 0 chr6 139114134 139115520 -50164034 - L1P1 LINE L1 -468 5687 4302 4262 16 0 0 chr6 139115514 139116001 -50163553 + L1HS LINE L1 5667 6153 -2 * 297 306 150 46 chr6 139116126 139116492 -50163062 - L2 LINE L2 -2515 799 396 1096 316 54 15 chr6 139116710 139117115 -50162439 + LTR16A LTR ERVL 16 436 -14 221 351 32 74 chr6 139117130 139117415 -50162139 + L2 LINE L2 818 1090 -2224 1500 251 71 92 chr6 139117656 139118024 -50161530 - L1ME3 LINE L1 -1 6161 5786 1699 151 23 7 chr6 139118024 139118323 -50161231 + AluJb SINE Alu 1 304 -8 1500 251 71 92 chr6 139118323 139118565 -50160989 - L1ME3 LINE L1 -376 5786 5540 230 81 27 0 chr6 139118565 139118602 -50160952 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 1500 251 71 92 chr6 139118602 139118909 -50160645 - L1ME3 LINE L1 -622 5540 5263 246 171 53 0 chr6 139118914 139118990 -50160564 + (TA)n Simple_repeat Simple_repeat 2 81 0 2226 293 78 18 chr6 139118993 139120267 -50159287 - L1ME3 LINE L1 -880 5266 3917 243 213 21 0 chr6 139120295 139120342 -50159212 + MER5B DNA MER1_type 1 48 -130 798 267 45 79 chr6 139120348 139121062 -50158492 - LTR41 LTR ERVL -6 767 1 308 289 16 25 chr6 139121102 139121223 -50158331 + LTR16C LTR ERVL 372 491 0 22 35 0 0 chr6 139121339 139121368 -50158186 + AT_rich Low_complexity Low_complexity 1 29 0 589 333 119 14 chr6 139121385 139121881 -50157673 + L2 LINE L2 1600 2147 -1167 1984 283 78 31 chr6 139122015 139122525 -50157029 + L2 LINE L2 1823 2307 -1007 2208 126 30 33 chr6 139122525 139122890 -50156664 + THE1B LTR MaLR 1 364 0 11228 102 8 8 chr6 139122890 139124469 -50155085 + THE1B-int LTR MaLR 1 1580 0 2100 135 30 46 chr6 139124469 139124839 -50154715 + THE1B LTR MaLR 1 364 0 1984 283 78 31 chr6 139124839 139125078 -50154476 + L2 LINE L2 2306 2610 -704 1070 278 63 29 chr6 139125104 139125514 -50154040 + LTR16A LTR ERVL 27 450 0 836 297 152 41 chr6 139125517 139126137 -50153417 + L2 LINE L2 2609 3313 0 223 365 100 19 chr6 139126477 139126847 -50152707 - L2 LINE L2 -1012 2302 1903 783 248 13 0 chr6 139127133 139127290 -50152264 - MER58A DNA MER1_type 0 160 2 210 390 26 52 chr6 139127532 139127686 -50151868 - L2 LINE L2 0 3272 3123 439 149 0 14 chr6 139127832 139127906 -50151648 - MADE1 DNA Mariner 0 80 8 598 239 62 0 chr6 139128154 139128330 -50151224 - MER69 DNA AcHobo -7 2519 2333 1446 215 123 12 chr6 139128418 139128832 -50150722 - MER69 DNA AcHobo -338 2188 1729 227 233 14 0 chr6 139129870 139129943 -50149611 - MER69 DNA AcHobo -114 2412 2339 8727 31 1 0 chr6 139129943 139131034 -50148520 + L1P LINE L1 3674 4765 -1381 2273 178 112 4 chr6 139131181 139131647 -50147907 + MLT2B1 LTR ERVL 5 520 0 234 0 0 0 chr6 139132235 139132261 -50147293 + (A)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr6 139132668 139132700 -50146854 + AT_rich Low_complexity Low_complexity 1 32 0 31 26 0 0 chr6 139132715 139132753 -50146801 + AT_rich Low_complexity Low_complexity 1 38 0 412 274 24 32 chr6 139133659 139133783 -50145771 + L2 LINE L2 2543 2665 -649 32 26 0 0 chr6 139133832 139133871 -50145683 + AT_rich Low_complexity Low_complexity 1 39 0 315 217 30 24 chr6 139133872 139134038 -50145516 + (TATAA)n Simple_repeat Simple_repeat 1 167 0 395 278 21 49 chr6 139134090 139134234 -50145320 - L2 LINE L2 -649 2665 2526 70 24 0 0 chr6 139134234 139134318 -50145236 + AT_rich Low_complexity Low_complexity 1 84 0 1127 285 105 27 chr6 139134318 139134961 -50144593 + L2 LINE L2 2638 3312 -1 199 246 174 0 chr6 139135115 139135184 -50144370 + L2 LINE L2 2309 2389 -925 283 282 182 14 chr6 139135430 139135650 -50143904 + L2 LINE L2 2721 2977 -337 795 244 178 15 chr6 139135781 139136240 -50143314 + MLT1G3 LTR MaLR 4 535 -3 1925 115 37 37 chr6 139136454 139136802 -50142752 - THE1A LTR MaLR -7 348 1 1622 52 5 0 chr6 139136802 139137015 -50142539 - THE1A-int LTR MaLR 0 1580 1367 * 6216 87 44 0 chr6 139137012 139137896 -50141658 - THE1A-int LTR MaLR -657 923 1 1518 175 39 89 chr6 139137896 139138279 -50141275 - THE1B LTR MaLR 0 364 1 1419 168 54 7 chr6 139138381 139138661 -50140893 + L1MB3 LINE L1 5888 6180 -3 2059 107 24 7 chr6 139138774 139138900 -50140654 + AluSg1 SINE Alu 1 123 -186 204 67 0 0 chr6 139138900 139138930 -50140624 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2059 107 24 7 chr6 139138930 139139093 -50140461 + AluSg1 SINE Alu 123 295 -14 353 319 22 14 chr6 139139097 139139235 -50140319 + MIR SINE MIR 49 187 -75 1348 191 23 94 chr6 139140114 139140507 -50139047 + MLT1A1 LTR MaLR 1 365 0 1300 238 129 33 chr6 139140964 139141525 -50138029 - MLT1E2 LTR MaLR -4 622 5 21 36 0 0 chr6 139141717 139141745 -50137809 + AT_rich Low_complexity Low_complexity 1 28 0 482 276 14 21 chr6 139143384 139143529 -50136025 + MIR SINE MIR 7 150 -112 362 243 7 88 chr6 139143537 139143673 -50135881 + MER94 DNA DNA 10 134 0 5102 151 17 1 chr6 139143698 139144533 -50135021 + L1MC1 LINE L1 5480 6327 -6 358 232 0 0 chr6 139144969 139145038 -50134516 + MIR SINE MIR 72 140 -122 180 305 53 32 chr6 139145283 139145378 -50134176 + L3 LINE CR1 821 917 -660 198 103 0 0 chr6 139145947 139145976 -50133578 + (TC)n Simple_repeat Simple_repeat 2 30 0 308 268 175 33 chr6 139146228 139146411 -50133143 + MIR SINE MIR 42 250 -12 2393 94 0 0 chr6 139146474 139146783 -50132771 + AluSg SINE Alu 1 309 -1 309 345 88 6 chr6 139146893 139147064 -50132490 - MIR SINE MIR 0 262 78 378 283 136 35 chr6 139148163 139148421 -50131133 - HAL1 LINE L1 -1304 1203 920 1216 229 4 0 chr6 139148597 139148850 -50130704 + MLT1A1 LTR MaLR 112 365 0 890 181 52 5 chr6 139148965 139149175 -50130379 - L1MD2 LINE L1 -1 6358 6139 3555 240 54 50 chr6 139149211 139149621 -50129933 - L1M4 LINE L1 -1110 5036 4629 6117 100 13 3 chr6 139149621 139150752 -50128802 + L1PA13 LINE L1 5010 6162 -1 3555 240 54 50 chr6 139150752 139151853 -50127701 - L1M4 LINE L1 -1517 4629 3519 1034 256 144 18 chr6 139151865 139152489 -50127065 - L1M4 LINE L1 -2842 3304 2602 611 256 101 10 chr6 139152498 139152795 -50126759 - L1M4 LINE L1 -3608 2538 2215 3887 112 13 2 chr6 139152931 139153546 -50126008 + L1MA3 LINE L1 5330 5951 -354 735 59 0 0 chr6 139153546 139153644 -50125910 + L1MA3 LINE L1 6205 6305 0 41 0 0 0 chr6 139153655 139153696 -50125858 + AT_rich Low_complexity Low_complexity 1 41 0 2028 272 32 59 chr6 139153733 139154823 -50124731 + L1PA12 LINE L1 8 1879 -5702 3415 116 4 4 chr6 139154825 139155332 -50124222 + L1PA15 LINE L1 5658 6164 -1 27 0 0 0 chr6 139155520 139155547 -50124007 + AT_rich Low_complexity Low_complexity 1 27 0 219 273 20 50 chr6 139155940 139156039 -50123515 - L2 LINE L2 -5 3308 3213 634 142 39 7 chr6 139157290 139157445 -50122109 + GA-rich Low_complexity Low_complexity 1 160 0 836 168 0 0 chr6 139158222 139158365 -50121189 - L1 LINE L1 -1925 4221 4079 1038 146 54 5 chr6 139158365 139158568 -50120986 + L1PA16 LINE L1 5952 6166 0 2402 102 0 0 chr6 139158586 139158889 -50120665 + AluSc SINE Alu 7 309 0 243 61 0 0 chr6 139158926 139158959 -50120595 + (TC)n Simple_repeat Simple_repeat 2 34 0 24 0 0 0 chr6 139159106 139159130 -50120424 + AT_rich Low_complexity Low_complexity 1 24 0 1516 216 31 14 chr6 139160283 139160640 -50118914 + MLT1A1 LTR MaLR 1 363 -2 2463 47 0 3 chr6 139160651 139160949 -50118605 + AluY SINE Alu 1 297 -14 335 349 82 33 chr6 139160961 139161291 -50118263 - L2 LINE L2 -206 3066 2717 3611 148 66 70 chr6 139162002 139162790 -50116764 + LTR1 LTR ERV1 1 785 0 262 284 79 31 chr6 139162899 139163026 -50116528 + MIR SINE MIR 130 262 0 784 186 158 0 chr6 139164198 139164375 -50115179 + MER3 DNA MER1_type 1 205 -4 38 71 0 10 chr6 139164522 139164598 -50114956 + AT_rich Low_complexity Low_complexity 1 77 -20 1680 161 39 4 chr6 139164598 139164750 -50114804 - AluSx SINE Alu -23 289 121 189 0 0 0 chr6 139164750 139164771 -50114783 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1680 161 39 4 chr6 139164771 139164897 -50114657 - AluSx SINE Alu -191 121 1 38 71 0 10 chr6 139164897 139164918 -50114636 + AT_rich Low_complexity Low_complexity 77 97 0 2651 88 58 21 chr6 139165000 139165432 -50114122 + LTR7 LTR ERV1 1 448 -2 5732 95 12 29 chr6 139165434 139166385 -50113169 + HERVH LTR ERV1 1 934 -6779 * 6386 126 155 86 chr6 139166384 139167972 -50111582 + pTR5 LTR ERV1 742 2438 0 14157 81 5 10 chr6 139167975 139170049 -50109505 + HERVH LTR ERV1 931 2995 -4718 911 120 7 0 chr6 139170028 139170178 -50109376 + HERVH LTR ERV1 3140 3290 -4423 * 3154 112 6 2 chr6 139170168 139170668 -50108886 + HERVH LTR ERV1 3492 3993 -3720 4017 146 6 3 chr6 139170670 139171330 -50108224 + HERVH LTR ERV1 4488 5149 -2564 1326 130 19 0 chr6 139171331 139171547 -50108007 + HERVH LTR ERV1 5600 5819 -1894 2374 72 50 13 chr6 139171547 139171923 -50107631 + HERVH LTR ERV1 7324 7713 0 2689 83 58 21 chr6 139171923 139172355 -50107199 + LTR7 LTR ERV1 1 448 -2 1618 171 0 0 chr6 139172616 139172873 -50106681 - AluJb SINE Alu -6 306 50 199 286 0 0 chr6 139173287 139173336 -50106218 + L2 LINE L2 3215 3263 -9 2410 193 108 8 chr6 139173607 139174428 -50105126 + Charlie1a DNA MER1_type 7 963 -492 306 208 28 0 chr6 139174425 139174497 -50105057 + Charlie1a DNA MER1_type 1382 1455 0 * 277 205 51 94 chr6 139174614 139174731 -50104823 - MER112 DNA MER1_type -141 119 8 3609 106 4 4 chr6 139174743 139175254 -50104300 - MER9 LTR ERVK 0 511 1 181 262 49 0 chr6 139175345 139175406 -50104148 + L2 LINE L2 2470 2533 -781 615 109 119 0 chr6 139175435 139175536 -50104018 - AluY SINE Alu -15 296 184 197 211 0 0 chr6 139175538 139175576 -50103978 + L2 LINE L2 2665 2702 -612 2257 125 55 0 chr6 139176327 139176711 -50102843 - MSTA LTR MaLR -2 426 22 23 0 0 0 chr6 139176764 139176787 -50102767 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr6 139177599 139177622 -50101932 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1964 87 0 4 chr6 139177624 139177877 -50101677 - AluY SINE Alu -31 280 29 2111 205 53 53 chr6 139178099 139178669 -50100885 + L1MDa LINE L1 4 573 -5967 950 134 40 40 chr6 139178680 139178881 -50100673 + THE1C LTR MaLR 175 375 0 5181 179 67 57 chr6 139178883 139180519 -50099035 + L1MDa LINE L1 1117 2766 -3774 331 365 75 25 chr6 139180539 139180780 -50098774 + L2 LINE L2 2634 2886 -428 230 239 0 0 chr6 139181263 139181309 -50098245 + L2 LINE L2 3268 3313 0 661 293 47 21 chr6 139181403 139181812 -50097742 - L1MC4 LINE L1 0 8042 7519 1276 176 40 22 chr6 139182118 139182345 -50097209 - AluJb SINE Alu -81 231 1 4627 186 29 16 chr6 139182836 139184685 -50094869 - L1MB8 LINE L1 -1 6177 4308 2060 127 3 0 chr6 139185936 139186227 -50093327 + AluSc SINE Alu 1 292 -17 1963 144 62 9 chr6 139186237 139186557 -50092997 - MER1B DNA MER1_type 0 337 1 240 359 11 0 chr6 139187146 139187238 -50092316 + MIR3 SINE MIR 81 173 -35 4606 165 27 62 chr6 139187474 139188366 -50091188 - L1MB3 LINE L1 -9 6174 5374 1037 213 94 57 chr6 139188366 139188718 -50090836 + MLT1A1 LTR MaLR 1 365 0 4606 165 27 62 chr6 139188718 139189401 -50090153 - L1MB3 LINE L1 -809 5374 4669 753 156 21 0 chr6 139189971 139190112 -50089442 + L1MB4 LINE L1 6028 6171 -9 566 45 0 0 chr6 139190383 139190483 -50089071 - AluSp/q SINE Alu 0 315 216 211 281 37 37 chr6 139191204 139191286 -50088268 - L2 LINE L2 -1 3312 3231 509 284 45 0 chr6 139191375 139191530 -50088024 - MIR SINE MIR -9 253 92 2147 179 48 24 chr6 139191725 139192143 -50087411 + MSTA LTR MaLR 1 428 0 1752 207 170 5 chr6 139192374 139192779 -50086775 + MER70A LTR ERVL 1 472 0 2644 104 0 6 chr6 139194316 139194682 -50084872 - THE1B LTR MaLR 0 364 1 10133 100 22 65 chr6 139194682 139196332 -50083222 - THE1B-int LTR MaLR 0 1580 1 2457 129 3 3 chr6 139196332 139196696 -50082858 - THE1B LTR MaLR 0 364 1 579 338 34 4 chr6 139196832 139197066 -50082488 + L2 LINE L2 2136 2376 -938 1787 156 0 33 chr6 139197269 139197571 -50081983 - AluSx SINE Alu -20 292 1 760 324 150 16 chr6 139197572 139198010 -50081544 + L2 LINE L2 2772 3266 -6 1450 186 46 63 chr6 139198055 139198423 -50081131 + MLT1A1 LTR MaLR 1 365 0 508 226 101 13 chr6 139198428 139198587 -50080967 + MIR SINE MIR 90 262 0 1658 171 41 17 chr6 139198777 139198923 -50080631 - L1MB1 LINE L1 -2 6166 6025 1997 140 60 3 chr6 139198923 139199274 -50080280 - MER93b LTR ERV1 0 373 3 1658 171 41 17 chr6 139199274 139199472 -50080082 - L1MB1 LINE L1 -143 6025 5814 615 197 14 56 chr6 139199473 139199615 -50079939 - BC200 scRNA scRNA -64 136 1 282 116 0 0 chr6 139199623 139199666 -50079888 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 2457 62 7 0 chr6 139199669 139199978 -50079576 - AluY SINE Alu 0 311 1 339 202 21 43 chr6 139200923 139201017 -50078537 + MER34 LTR ERV1 451 542 0 2420 63 0 28 chr6 139201672 139201990 -50077564 - AluY SINE Alu -2 309 1 3597 112 63 2 chr6 139204531 139205121 -50074433 - Tigger3b DNA MER2_type 0 1231 606 2520 143 38 21 chr6 139205121 139205540 -50074014 + MSTB LTR MaLR 1 426 0 * 3727 119 51 8 chr6 139205540 139206121 -50073433 - Tigger3b DNA MER2_type -621 610 5 508 323 39 13 chr6 139206328 139206557 -50072997 + MIR SINE MIR 28 262 0 386 298 142 30 chr6 139206593 139207060 -50072494 - L2 LINE L2 -92 3221 2673 302 237 65 15 chr6 139207586 139207673 -50071881 + MIR SINE MIR 75 163 -45 29 0 0 0 chr6 139207872 139207901 -50071653 + AT_rich Low_complexity Low_complexity 1 29 0 2468 61 0 19 chr6 139209140 139209451 -50070103 - AluY SINE Alu -6 305 1 1723 120 47 70 chr6 139209518 139209902 -50069652 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr6 139209923 139209944 -50069610 + AT_rich Low_complexity Low_complexity 1 21 0 2655 52 0 0 chr6 139210169 139210476 -50069078 - AluY SINE Alu -4 307 1 26 50 0 0 chr6 139211028 139211068 -50068486 + AT_rich Low_complexity Low_complexity 1 40 0 243 88 0 0 chr6 139211862 139211896 -50067658 + (TC)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr6 139212310 139212333 -50067221 + AT_rich Low_complexity Low_complexity 1 23 0 374 322 41 20 chr6 139212350 139212496 -50067058 - MIR3 SINE MIR -7 201 53 2741 125 7 7 chr6 139213407 139213848 -50065706 - L1PB2 LINE L1 0 6151 5711 2234 120 0 0 chr6 139213944 139214245 -50065309 + AluSx SINE Alu 1 301 -11 838 286 122 59 chr6 139214501 139215017 -50064537 - L2 LINE L2 -2 3311 2761 21 36 0 0 chr6 139215373 139215401 -50064153 + AT_rich Low_complexity Low_complexity 1 28 0 225 367 88 27 chr6 139215496 139215643 -50063911 - L2 LINE L2 0 3272 3117 308 259 22 118 chr6 139216670 139216898 -50062656 - L1MC5 LINE L1 -48 7913 7708 3247 251 76 36 chr6 139216909 139217655 -50061899 - L1ME2 LINE L1 -63 6035 5321 2465 80 0 0 chr6 139217655 139217954 -50061600 - AluSc SINE Alu -10 299 1 3247 251 76 36 chr6 139217954 139219102 -50060452 - L1ME2 LINE L1 -777 5321 4012 2236 284 76 31 chr6 139219156 139220730 -50058824 - L1ME2 LINE L1 -4492 1769 100 369 0 0 0 chr6 139220730 139220771 -50058783 + (TG)n Simple_repeat Simple_repeat 1 41 0 2236 284 76 31 chr6 139220771 139220848 -50058706 - L1ME2 LINE L1 -6161 100 28 219 284 69 10 chr6 139221136 139221231 -50058323 - MIR3 SINE MIR -3 205 105 187 237 53 0 chr6 139221231 139221269 -50058285 - MER5A DNA MER1_type -2 187 148 638 233 159 0 chr6 139221529 139221692 -50057862 - MER58C DNA MER1_type 0 215 27 779 262 43 49 chr6 139223295 139223600 -50055954 - L2 LINE L2 -16 3297 2995 1236 201 5 0 chr6 139223618 139223837 -50055717 + AluJb SINE Alu 86 305 -7 209 117 33 67 chr6 139224099 139224159 -50055395 + (CATAA)n Simple_repeat Simple_repeat 4 61 0 1764 188 106 16 chr6 139224344 139224769 -50054785 + MLT1C LTR MaLR 5 467 0 419 339 36 6 chr6 139224880 139225048 -50054506 - LTR33 LTR ERVL -348 173 1 2383 107 33 11 chr6 139225058 139225421 -50054133 + THE1C LTR MaLR 5 375 0 244 329 13 0 chr6 139225913 139225989 -50053565 - MIR3 SINE MIR -28 180 104 2694 199 62 8 chr6 139226680 139227213 -50052341 - MER77 LTR ERV1 -3 602 41 410 159 204 26 chr6 139227318 139227431 -50052123 - MER119 DNA MER1_type -3 580 448 387 316 11 0 chr6 139227445 139227540 -50052014 - MER119 DNA MER1_type -481 102 7 183 224 0 102 chr6 139227783 139227832 -50051722 + L2 LINE L2 3221 3264 -8 379 256 93 87 chr6 139228320 139228813 -50050741 + L1ME4a LINE L1 5529 6024 -97 241 237 10 10 chr6 139228825 139228922 -50050632 + CT-rich Low_complexity Low_complexity 2 98 0 27 29 0 0 chr6 139229248 139229282 -50050272 + AT_rich Low_complexity Low_complexity 1 34 0 4991 221 91 53 chr6 139229527 139232050 -50047504 + L1 LINE L1 1 2524 -4685 4608 179 4 43 chr6 139232047 139233191 -50046363 + L1 LINE L1 5313 6412 -796 * 982 151 0 65 chr6 139233212 139233444 -50046110 + L1MA4A LINE L1 4779 4995 -1151 5163 142 28 8 chr6 139233467 139234400 -50045154 + L1MA4A LINE L1 5346 6297 -6 195 186 0 0 chr6 139236494 139236537 -50043017 + (CGTG)n Simple_repeat Simple_repeat 1 43 0 408 296 141 83 chr6 139236616 139237448 -50042106 + L1M2 LINE L1 544 1423 -5426 2316 95 7 0 chr6 139239885 139240180 -50039374 + AluSx SINE Alu 1 297 -15 555 304 171 20 chr6 139240227 139240573 -50038981 + L2 LINE L2 2908 3305 -8 270 297 55 55 chr6 139240786 139240914 -50038640 + MIR SINE MIR 15 142 -120 2185 90 7 13 chr6 139242376 139242675 -50036879 - AluSx SINE Alu -15 297 1 234 91 0 0 chr6 139242923 139242956 -50036598 + (TG)n Simple_repeat Simple_repeat 2 34 0 194 269 58 19 chr6 139243488 139243540 -50036014 - L2 LINE L2 0 3272 3219 2813 293 77 23 chr6 139244231 139245619 -50033935 - L2 LINE L2 -18 3295 1829 417 283 18 18 chr6 139245663 139245776 -50033778 - MIR SINE MIR -130 132 20 2356 95 0 0 chr6 139246042 139246347 -50033207 - AluSc SINE Alu -4 305 1 1197 319 80 46 chr6 139246360 139247287 -50032267 + L2 LINE L2 2017 2974 -340 209 322 144 33 chr6 139247690 139247870 -50031684 + L2 LINE L2 2684 2883 -431 315 206 0 44 chr6 139248075 139248143 -50031411 + L2 LINE L2 3249 3313 0 793 259 144 11 chr6 139248362 139248843 -50030711 - MLT1H1 LTR MaLR 0 555 2 25 0 0 0 chr6 139248890 139248915 -50030639 + AT_rich Low_complexity Low_complexity 1 25 0 1718 163 0 21 chr6 139250040 139250322 -50029232 - AluJo SINE Alu -28 284 9 189 229 0 0 chr6 139250664 139250712 -50028842 + (TA)n Simple_repeat Simple_repeat 1 48 0 378 115 0 0 chr6 139250833 139250894 -50028660 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 1997 120 0 4 chr6 139250894 139251161 -50028393 - AluSg SINE Alu -44 266 1 1393 127 0 24 chr6 139251193 139251398 -50028156 - AluJb SINE Alu -112 200 1 1259 228 100 13 chr6 139251654 139252106 -50027448 + Charlie7 DNA MER1_type 1907 2397 -215 373 327 6 6 chr6 139252798 139252957 -50026597 - MER52A LTR ERV1 0 1755 1597 648 249 101 139 chr6 139252959 139253805 -50025749 - LTR28 LTR ERV1 -285 1470 1 847 278 81 54 chr6 139254044 139254501 -50025053 - L2 LINE L2 -251 3021 2560 31 68 0 0 chr6 139255738 139255797 -50023757 + AT_rich Low_complexity Low_complexity 1 59 0 4207 89 39 36 chr6 139255862 139256330 -50023224 - MER4A LTR ERV1 0 664 192 2126 106 0 35 chr6 139256330 139256641 -50022913 + AluSc SINE Alu 1 300 -9 4207 89 39 36 chr6 139256641 139256834 -50022720 - MER4A LTR ERV1 -472 192 1 200 290 87 14 chr6 139258309 139258378 -50021176 + MIR SINE MIR 34 107 -155 1527 190 89 6 chr6 139258386 139258723 -50020831 - MLT1A1 LTR MaLR 0 365 1 302 323 64 70 chr6 139258740 139258858 -50020696 + L1M4 LINE L1 4773 4890 -1256 1740 177 23 7 chr6 139258858 139259163 -50020391 + AluJb SINE Alu 1 310 -2 302 323 64 70 chr6 139259163 139259403 -50020151 + L1M4 LINE L1 4890 5129 -1017 228 237 153 17 chr6 139259470 139259647 -50019907 + L1M4 LINE L1 5197 5397 -749 1083 107 12 0 chr6 139259896 139260065 -50019489 - L1MA2 LINE L1 0 6304 6134 571 172 0 43 chr6 139260526 139260642 -50018912 + MLT1A1 LTR MaLR 1 111 -254 2301 187 39 13 chr6 139261254 139261799 -50017755 - Cheshire DNA MER1_type -4 2416 1858 999 214 21 45 chr6 139261808 139262098 -50017456 - L1MB8 LINE L1 -11 6167 5885 570 124 116 62 chr6 139262098 139262227 -50017327 - Cheshire DNA MER1_type -552 1868 1733 617 182 0 0 chr6 139262247 139262346 -50017208 - FLAM_A SINE Alu -21 121 23 686 179 62 26 chr6 139262357 139262552 -50017002 - Cheshire DNA MER1_type -679 1741 1540 1889 155 3 3 chr6 139262573 139262882 -50016672 + MER1B DNA MER1_type 31 339 0 5439 195 63 45 chr6 139262887 139264385 -50015169 - Cheshire DNA MER1_type -895 1525 1 2941 270 104 49 chr6 139264385 139265380 -50014174 + L2 LINE L2 1620 2736 -577 1502 178 19 15 chr6 139265380 139265650 -50013904 + AluJo SINE Alu 5 275 -37 2941 270 104 49 chr6 139265650 139266249 -50013305 + L2 LINE L2 2736 3301 -12 592 213 118 0 chr6 139266357 139266526 -50013028 - MER3 DNA MER1_type -20 189 1 183 260 40 0 chr6 139266536 139266586 -50012968 - MIR SINE MIR -109 99 48 365 323 0 10 chr6 139266663 139266762 -50012792 - MER5A DNA MER1_type -83 106 9 29 28 0 0 chr6 139267408 139267444 -50012110 + AT_rich Low_complexity Low_complexity 1 36 0 488 290 14 21 chr6 139267738 139267883 -50011671 - MER5A DNA MER1_type 0 189 46 206 310 28 0 chr6 139267888 139267959 -50011595 + MIR SINE MIR 182 254 -8 263 319 44 92 chr6 139268097 139268414 -50011140 - L2 LINE L2 -14 3258 2957 744 266 65 4 chr6 139268791 139269066 -50010488 - L1MC5 LINE L1 -66 7895 7604 399 306 80 31 chr6 139270016 139270233 -50009321 - L1ME3A LINE L1 -208 5962 5757 2189 128 3 3 chr6 139270233 139270545 -50009009 + AluSx SINE Alu 1 312 0 399 306 80 31 chr6 139270545 139270877 -50008677 - L1ME3A LINE L1 -413 5757 5386 234 228 99 55 chr6 139270928 139271130 -50008424 - L1ME3A LINE L1 -782 5364 5154 206 274 32 16 chr6 139271131 139271193 -50008361 + L2 LINE L2 1831 1893 -1421 2198 267 130 18 chr6 139271207 139272308 -50007246 - MER69B DNA AcHobo -1 1225 2 1954 120 10 14 chr6 139273111 139273403 -50006151 + AluSc SINE Alu 1 291 -18 196 308 0 0 chr6 139273490 139273542 -50006012 + L2 LINE L2 3254 3305 -8 246 327 120 2 chr6 139274132 139274300 -50005254 + MIR SINE MIR 50 234 -28 26 64 0 0 chr6 139275069 139275116 -50004438 + AT_rich Low_complexity Low_complexity 1 47 0 26 0 0 0 chr6 139275138 139275164 -50004390 + AT_rich Low_complexity Low_complexity 1 26 0 262 300 12 0 chr6 139277605 139277685 -50001869 + L3 LINE CR1 1367 1447 -130 249 83 0 0 chr6 139277689 139277725 -50001829 + (CA)n Simple_repeat Simple_repeat 2 37 0 613 248 37 6 chr6 139277883 139278044 -50001510 + MIR SINE MIR 3 168 -94 1019 133 124 14 chr6 139278108 139278326 -50001228 + L1MA7 LINE L1 6047 6288 -3 1091 196 63 22 chr6 139279456 139279798 -49999756 - MSTD LTR MaLR 0 396 1 326 275 81 89 chr6 139281070 139281260 -49998294 - L1ME4a LINE L1 -225 5896 5707 2459 87 0 0 chr6 139281260 139281560 -49997994 + AluSq SINE Alu 1 300 -13 326 275 81 89 chr6 139281560 139281616 -49997938 - L1ME4a LINE L1 -414 5707 5652 242 263 47 91 chr6 139281643 139281843 -49997711 - L1MEd LINE L1 -5081 1038 848 2317 84 0 3 chr6 139281843 139282140 -49997414 - AluSp SINE Alu -17 296 1 242 263 47 91 chr6 139282140 139282171 -49997383 - L1MEd LINE L1 -5271 848 817 1516 173 52 24 chr6 139282361 139282568 -49996986 - MER44D DNA MER2_type -1882 609 409 2309 92 0 0 chr6 139282568 139282862 -49996692 + AluY SINE Alu 1 294 -17 1516 173 52 24 chr6 139282862 139282984 -49996570 - MER44D DNA MER2_type -2082 409 1 248 231 19 0 chr6 139284193 139284245 -49995309 + CT-rich Low_complexity Low_complexity 3 55 0 218 250 0 0 chr6 139285878 139285922 -49993632 - MIR SINE MIR 0 262 219 721 288 42 72 chr6 139287714 139287939 -49991615 - L2 LINE L2 -29 3284 3074 375 23 0 0 chr6 139287939 139287983 -49991571 + (TG)n Simple_repeat Simple_repeat 1 44 0 721 288 42 72 chr6 139287983 139288143 -49991411 - L2 LINE L2 -239 3074 2911 24 53 0 0 chr6 139288576 139288614 -49990940 + AT_rich Low_complexity Low_complexity 1 38 0 335 272 147 37 chr6 139288867 139289003 -49990551 - MIR SINE MIR -3 259 109 25 0 0 0 chr6 139289370 139289395 -49990159 + AT_rich Low_complexity Low_complexity 1 25 0 228 290 99 0 chr6 139289922 139290084 -49989470 + L1ME LINE L1 5599 5776 -345 21 57 0 0 chr6 139290206 139290241 -49989313 + AT_rich Low_complexity Low_complexity 1 35 0 402 314 54 29 chr6 139290347 139290586 -49988968 + L1MC4a LINE L1 5657 5901 -1907 220 320 141 0 chr6 139290846 139290974 -49988580 - L2 LINE L2 -1487 1827 1682 2262 80 100 0 chr6 139291181 139291530 -49988024 + L1PA7 LINE L1 5768 6151 -3 464 149 92 0 chr6 139291614 139291701 -49987853 + MER68 LTR ERV1 397 491 -71 505 314 147 36 chr6 139293312 139293761 -49985793 + HAL1 LINE L1 340 838 -1669 621 251 95 103 chr6 139293851 139294421 -49985133 - HAL1 LINE L1 -182 2325 1761 28 0 0 0 chr6 139294448 139294476 -49985078 + AT_rich Low_complexity Low_complexity 1 28 0 189 333 83 67 chr6 139294812 139294932 -49984622 - L2 LINE L2 -9 3263 3142 685 246 128 36 chr6 139295582 139295862 -49983692 + L1ME4a LINE L1 5541 5860 -261 2367 81 0 3 chr6 139295862 139296158 -49983396 - AluSg1 SINE Alu -14 295 1 685 246 128 36 chr6 139296158 139296216 -49983338 + L1ME4a LINE L1 5860 5911 -210 2078 118 3 3 chr6 139296486 139296775 -49982779 - AluSx SINE Alu -23 289 1 587 359 62 54 chr6 139297522 139297890 -49981664 - L2 LINE L2 -9 3263 2893 236 340 19 10 chr6 139297933 139298036 -49981518 - L2 LINE L2 -522 2792 2689 3855 149 17 11 chr6 139298038 139298702 -49980852 + L1MA8 LINE L1 5513 6180 -111 956 96 7 7 chr6 139298894 139299029 -49980525 + AluSq/x SINE Alu 1 135 -178 2091 125 3 10 chr6 139299029 139299334 -49980220 + AluSx SINE Alu 1 303 -9 547 308 128 27 chr6 139299359 139299798 -49979756 - L2 LINE L2 -943 2371 1889 342 115 0 0 chr6 139300137 139300189 -49979365 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 180 152 0 0 chr6 139300245 139300278 -49979276 + GA-rich Low_complexity Low_complexity 4 36 0 393 117 0 0 chr6 139300331 139300391 -49979163 + (GGGA)n Simple_repeat Simple_repeat 4 63 0 527 255 240 5 chr6 139300833 139301033 -49978521 + MIR SINE MIR 10 256 -6 192 77 0 0 chr6 139301039 139301065 -49978489 + (CAT)n Simple_repeat Simple_repeat 2 27 0 31 26 0 0 chr6 139301512 139301550 -49978004 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr6 139301582 139301605 -49977949 + AT_rich Low_complexity Low_complexity 1 23 0 7257 95 43 2 chr6 139301605 139302763 -49976791 - L1MA1 LINE L1 0 6302 5111 686 86 11 1 chr6 139302916 139303029 -49976525 - L1P LINE L1 -753 5402 5289 2688 80 3 3 chr6 139304513 139304864 -49974690 - THE1A LTR MaLR -4 351 1 11300 106 2 9 chr6 139304864 139306455 -49973099 - THE1A-int LTR MaLR 0 1580 1 2570 67 44 3 chr6 139306455 139306796 -49972758 - THE1A LTR MaLR 0 355 1 26 0 0 0 chr6 139307050 139307076 -49972478 + AT_rich Low_complexity Low_complexity 1 26 0 228 158 0 0 chr6 139307079 139307117 -49972437 + L1MC/D LINE L1 5853 5890 -1918 21 57 0 0 chr6 139307324 139307359 -49972195 + AT_rich Low_complexity Low_complexity 1 35 0 457 224 26 0 chr6 139307576 139307692 -49971862 - L1ME LINE L1 -734 5436 5318 11839 23 0 1 chr6 139307788 139309944 -49969610 - L1PA3 LINE L1 0 6155 4000 1230 14 0 0 chr6 139309944 139310085 -49969469 + L1P LINE L1 1786 1926 -4220 394 263 73 44 chr6 139310070 139310412 -49969142 - L1ME LINE L1 -810 5336 4985 * 4708 57 0 0 chr6 139310503 139311096 -49968458 - L1PA8 LINE L1 -1 6171 5579 2220 63 40 53 chr6 139311096 139311465 -49968089 + L1P3 LINE L1 5122 5479 -675 187 0 43 65 chr6 139311465 139311511 -49968043 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 2220 63 40 53 chr6 139311511 139311627 -49967927 + L1P3 LINE L1 5479 5595 -559 328 287 16 0 chr6 139311732 139311854 -49967700 - L1ME LINE L1 -1326 4820 4697 348 191 0 0 chr6 139311863 139311926 -49967628 - MLT1A1 LTR MaLR -1 364 302 618 258 51 19 chr6 139312928 139313184 -49966370 + L1MC5 LINE L1 7638 7901 -60 2804 87 2 32 chr6 139313418 139313830 -49965724 - L1PA10 LINE L1 0 6168 5769 235 118 0 0 chr6 139313844 139313878 -49965676 - L1PA8 LINE L1 -13 6159 6126 * 11869 107 9 5 chr6 139313876 139315660 -49963894 + L1P LINE L1 2321 4112 -2034 454 158 53 18 chr6 139315696 139315810 -49963744 + L1MA8 LINE L1 6172 6289 -2 402 340 129 22 chr6 139315810 139316375 -49963179 + L2 LINE L2 2511 3196 -117 487 209 37 86 chr6 139316438 139316625 -49962929 - MER104 DNA MER2_type 0 180 3 362 312 116 10 chr6 139316965 139317164 -49962390 - L2 LINE L2 -1810 1504 1285 350 235 74 47 chr6 139317850 139317999 -49961555 + L2 LINE L2 2915 3067 -205 355 302 77 89 chr6 139320445 139320693 -49958861 - L2 LINE L2 0 3272 3028 281 244 23 23 chr6 139320998 139321084 -49958470 + MER5B DNA MER1_type 1 86 -92 275 298 83 33 chr6 139323850 139324031 -49955523 + L2 LINE L2 3118 3307 -6 530 255 178 14 chr6 139324096 139324304 -49955250 + MIR SINE MIR 21 262 0 217 233 80 87 chr6 139324397 139324547 -49955007 - L2 LINE L2 -874 2440 2292 379 347 96 14 chr6 139326071 139326290 -49953264 - L3 LINE CR1 -16 1561 1325 324 0 0 0 chr6 139326878 139326914 -49952640 + (TG)n Simple_repeat Simple_repeat 1 36 0 261 0 0 0 chr6 139326920 139326949 -49952605 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 244 369 18 9 chr6 139327331 139327442 -49952112 - L3 LINE CR1 -354 1223 1112 286 371 95 46 chr6 139327582 139327970 -49951584 + L2 LINE L2 2866 3272 0 517 233 182 6 chr6 139329322 139329481 -49950073 - MER5A DNA MER1_type 0 189 3 585 292 25 20 chr6 139330762 139330964 -49948590 + MIR SINE MIR 3 205 -57 1921 139 7 19 chr6 139331764 139332073 -49947481 - AluSx SINE Alu -5 307 3 225 0 0 0 chr6 139334950 139334975 -49944579 + (CA)n Simple_repeat Simple_repeat 2 26 0 2120 130 0 0 chr6 139335040 139335333 -49944221 - AluSx SINE Alu -14 298 6 398 299 119 52 chr6 139335398 139335903 -49943651 - L1ME4a LINE L1 -71 6050 5512 331 278 85 69 chr6 139335909 139336322 -49943232 - L1ME4a LINE L1 -759 5387 5090 2129 116 7 0 chr6 139337157 139337460 -49942094 - AluSq SINE Alu 0 313 9 460 210 105 11 chr6 139338988 139339169 -49940385 - MER20B DNA MER1_type -22 761 564 22 0 0 0 chr6 139339305 139339327 -49940227 + AT_rich Low_complexity Low_complexity 1 22 0 210 232 10 20 chr6 139339349 139339448 -49940106 + (TA)n Simple_repeat Simple_repeat 1 98 0 280 250 14 0 chr6 139339457 139339529 -49940025 - MER20B DNA MER1_type -458 325 253 954 216 118 43 chr6 139339538 139339603 -49939951 - MER20B DNA MER1_type -424 359 300 2179 73 0 53 chr6 139339603 139339904 -49939650 + AluY SINE Alu 17 301 -10 954 216 118 43 chr6 139339904 139340167 -49939387 - MER20B DNA MER1_type -483 300 6 1747 291 92 24 chr6 139340467 139341431 -49938123 + L2 LINE L2 2282 3313 0 401 325 176 55 chr6 139341698 139342657 -49936897 - L2 LINE L2 -350 2964 1890 207 427 16 0 chr6 139342667 139342791 -49936763 - L2 LINE L2 -9 3263 3138 323 333 72 34 chr6 139342904 139343168 -49936386 + L2 LINE L2 2953 3226 -87 2699 107 35 0 chr6 139344042 139344443 -49935111 - L1PA16 LINE L1 -305 5861 5447 5411 115 23 12 chr6 139344453 139345333 -49934221 - L1PB2 LINE L1 0 6151 5262 1182 193 92 61 chr6 139345742 139346037 -49933517 + Tigger5 DNA MER2_type 1 304 -2019 477 0 0 0 chr6 139346078 139346131 -49933423 + (TG)n Simple_repeat Simple_repeat 2 54 0 235 293 146 0 chr6 139347521 139347603 -49931951 + MIR SINE MIR 148 241 -21 717 246 23 0 chr6 139347930 139348101 -49931453 + MER69A DNA AcHobo 2 176 -1 243 287 148 20 chr6 139348534 139348635 -49930919 - MIR3 SINE MIR -94 114 1 560 73 12 0 chr6 139348864 139348946 -49930608 + (TAGA)n Simple_repeat Simple_repeat 1 83 0 1355 82 121 5 chr6 139349643 139349849 -49929705 - MER30 DNA MER1_type 0 230 1 1835 140 73 25 chr6 139349912 139350270 -49929284 - THE1C LTR MaLR 0 375 1 1172 210 42 19 chr6 139353007 139353282 -49926272 - MSTD LTR MaLR -50 382 65 440 298 8 0 chr6 139353685 139353806 -49925748 - MLT1J LTR MaLR -389 122 1 302 240 68 62 chr6 139354015 139354161 -49925393 + L1P5 LINE L1 5299 5445 -709 229 302 23 0 chr6 139354493 139354579 -49924975 + MARNA DNA Mariner 387 474 -112 772 245 27 0 chr6 139356633 139356817 -49922737 - MER5A DNA MER1_type 0 189 1 416 257 221 0 chr6 139357005 139357145 -49922409 - MIR SINE MIR -90 172 2 228 143 0 0 chr6 139359419 139359454 -49920100 - L2 LINE L2 0 3313 3279 211 234 0 53 chr6 139359594 139359688 -49919866 + (TA)n Simple_repeat Simple_repeat 1 89 0 508 274 61 80 chr6 139360316 139360692 -49918862 - L1MC4a LINE L1 -105 6016 5645 21 36 0 0 chr6 139360900 139360928 -49918626 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 139362398 139362422 -49917132 + AT_rich Low_complexity Low_complexity 1 24 0 791 142 0 22 chr6 139362612 139362746 -49916808 - FLAM_A SINE Alu 0 133 3 24 0 0 0 chr6 139367255 139367279 -49912275 + AT_rich Low_complexity Low_complexity 1 24 0 1071 247 126 56 chr6 139367579 139368024 -49911530 + L1ME3 LINE L1 5590 6065 -97 1942 114 0 4 chr6 139368027 139368298 -49911256 + AluY SINE Alu 38 307 -4 2029 96 31 0 chr6 139368306 139368597 -49910957 + AluSq SINE Alu 4 303 -10 334 307 44 53 chr6 139368779 139369004 -49910550 - L1MC4a LINE L1 -465 5656 5434 189 0 0 0 chr6 139369017 139369038 -49910516 + (CA)n Simple_repeat Simple_repeat 2 22 0 895 231 41 25 chr6 139369711 139369953 -49909601 + MIR SINE MIR 17 262 0 852 219 26 10 chr6 139370476 139370668 -49908886 + MLT1C LTR MaLR 235 429 -38 2186 107 0 31 chr6 139370913 139371265 -49908289 - AluY SINE Alu 0 343 2 677 274 182 27 chr6 139371394 139371966 -49907588 - L2 LINE L2 0 3313 2644 184 161 0 0 chr6 139372101 139372132 -49907422 - L2 LINE L2 -4 3309 3279 1146 245 69 37 chr6 139372637 139373016 -49906538 - LTR16A LTR ERVL 0 450 60 271 298 76 53 chr6 139373234 139373405 -49906149 + L2 LINE L2 3135 3309 -4 248 325 102 38 chr6 139373536 139373693 -49905861 + MIR3 SINE MIR 3 169 -39 * 265 239 187 37 chr6 139373692 139373826 -49905728 - MIR SINE MIR -6 256 103 23 0 0 0 chr6 139373837 139373860 -49905694 + AT_rich Low_complexity Low_complexity 1 23 0 209 297 149 0 chr6 139373866 139373940 -49905614 - MIR SINE MIR -103 105 21 300 120 0 0 chr6 139374108 139374158 -49905396 + (CGGGGG)n Simple_repeat Simple_repeat 4 53 0 214 247 21 43 chr6 139374790 139374883 -49904671 + A-rich Low_complexity Low_complexity 2 92 0 300 114 129 57 chr6 139375003 139375073 -49904481 - MIR SINE MIR -77 185 111 183 312 79 79 chr6 139375258 139375460 -49904094 + MIR SINE MIR 22 223 -39 180 0 0 0 chr6 139375523 139375543 -49904011 + (TAG)n Simple_repeat Simple_repeat 1 20 0 319 342 89 19 chr6 139375628 139375786 -49903768 + MIR3 SINE MIR 22 190 -18 378 0 0 0 chr6 139375907 139375949 -49903605 + (TCC)n Simple_repeat Simple_repeat 3 44 0 1109 187 29 5 chr6 139376084 139376293 -49903261 - MLT1C LTR MaLR 0 467 254 2296 137 8 33 chr6 139376356 139376750 -49902804 + MLT1B LTR MaLR 7 390 0 420 168 126 0 chr6 139376770 139376865 -49902689 - MLT1C LTR MaLR -360 107 1 199 163 0 58 chr6 139376975 139377061 -49902493 + A-rich Low_complexity Low_complexity 4 84 0 423 179 12 0 chr6 139377260 139377344 -49902210 - MER53 DNA DNA 0 189 105 236 196 0 0 chr6 139377370 139377416 -49902138 + L1MC4 LINE L1 6658 6703 -1339 591 288 57 39 chr6 139377451 139377680 -49901874 + MIR SINE MIR 20 252 -10 2330 91 3 0 chr6 139379848 139380145 -49899409 - AluSp SINE Alu -15 298 1 1824 187 0 0 chr6 139380395 139380694 -49898860 - AluJo SINE Alu -11 301 3 390 129 0 0 chr6 139380749 139380811 -49898743 + (CA)n Simple_repeat Simple_repeat 2 63 0 494 258 52 12 chr6 139380838 139381010 -49898544 - MER63A DNA MER1_type -6 204 26 1848 164 0 0 chr6 139381015 139381301 -49898253 - AluSx SINE Alu -26 286 1 261 277 0 0 chr6 139381394 139381459 -49898095 + (TA)n Simple_repeat Simple_repeat 2 66 0 24 91 0 0 chr6 139381469 139381535 -49898019 + AT_rich Low_complexity Low_complexity 1 66 0 1044 181 42 0 chr6 139381697 139381890 -49897664 + MLT1B LTR MaLR 1 201 -189 6287 201 55 81 chr6 139381906 139382881 -49896673 - L1 LINE L1 -1576 5591 4593 1036 189 4 66 chr6 139382881 139383108 -49896446 - AluJo SINE Alu -16 296 84 6287 201 55 81 chr6 139383108 139383490 -49896064 - L1 LINE L1 -2574 4593 4203 1943 134 55 27 chr6 139383490 139383855 -49895699 - THE1C LTR MaLR 0 375 1 6287 201 55 81 chr6 139383855 139385478 -49894076 - L1 LINE L1 -2964 4203 2540 2030 196 49 2 chr6 139385478 139385887 -49893667 + MSTB1 LTR MaLR 5 432 0 6287 201 55 81 chr6 139385887 139386542 -49893012 - L1 LINE L1 -4627 2540 2167 2000 149 3 0 chr6 139386542 139386830 -49892724 - AluSx SINE Alu -23 289 1 6287 201 55 81 chr6 139386830 139387287 -49892267 - L1 LINE L1 -5000 2167 1700 1186 313 29 39 chr6 139387756 139388472 -49891082 - L1 LINE L1 -6162 1006 1 399 280 60 24 chr6 139388608 139388776 -49890778 + MIR SINE MIR 67 240 -22 396 267 38 15 chr6 139388833 139388964 -49890590 + MIR SINE MIR 128 261 -1 359 56 19 0 chr6 139389761 139389815 -49889739 + (TG)n Simple_repeat Simple_repeat 2 56 0 26 50 0 0 chr6 139389863 139389903 -49889651 + AT_rich Low_complexity Low_complexity 1 40 0 27 29 0 0 chr6 139390541 139390575 -49888979 + AT_rich Low_complexity Low_complexity 1 34 0 240 35 0 0 chr6 139390702 139390731 -49888823 + (TG)n Simple_repeat Simple_repeat 2 30 0 531 278 86 0 chr6 139391393 139391544 -49888010 + MIR SINE MIR 2 165 -97 249 57 0 0 chr6 139391556 139391591 -49887963 + (CA)n Simple_repeat Simple_repeat 2 36 0 558 242 13 13 chr6 139392304 139392457 -49887097 + L1PB4 LINE L1 5996 6148 -8 1823 170 52 16 chr6 139393145 139393528 -49886026 + MER57A LTR ERV1 1 397 -6 2480 80 0 0 chr6 139393528 139393839 -49885715 - AluY SINE Alu 0 311 1 5146 127 1 15 chr6 139393871 139394674 -49884880 + MER57A-int LTR ERV1 16 807 -6730 * 7600 129 68 20 chr6 139394666 139395688 -49883866 + MER57A-int LTR ERV1 1006 2105 -5432 2330 186 98 64 chr6 139395688 139396396 -49883158 - MER50 LTR ERV1 -2 732 1 7600 129 68 20 chr6 139396396 139396677 -49882877 + MER57A-int LTR ERV1 2105 2371 -5166 896 110 19 32 chr6 139396676 139396830 -49882724 + MER41-int LTR ERV1 1866 2017 -3929 * 7732 106 29 50 chr6 139396826 139398179 -49881375 + MER41-int LTR ERV1 2781 4104 -3433 7172 199 135 10 chr6 139398193 139400264 -49879290 + L1PBa LINE L1 6 2336 -4527 4251 127 130 100 chr6 139400264 139401697 -49877857 + pTR5 LTR ERV1 743 2432 -6 3068 140 62 14 chr6 139401697 139402503 -49877051 + L1PBa LINE L1 2319 3163 -3699 1225 93 230 0 chr6 139402506 139402732 -49876822 + MER57A-int LTR ERV1 7260 7537 0 1826 157 104 32 chr6 139402732 139402799 -49876755 + MER57A LTR ERV1 1 62 -341 2169 106 0 0 chr6 139402799 139403112 -49876442 + AluSx SINE Alu 1 313 0 1826 157 104 32 chr6 139403112 139403419 -49876135 + MER57A LTR ERV1 62 403 0 967 286 74 123 chr6 139403462 139403867 -49875687 + L1ME LINE L1 426 767 -5352 1384 238 108 17 chr6 139403867 139404330 -49875224 + MLT1D LTR MaLR 1 505 0 967 286 74 123 chr6 139404330 139404794 -49874760 + L1ME LINE L1 767 1252 -4867 246 294 12 0 chr6 139404920 139405005 -49874549 + HAL1 LINE L1 1503 1588 -919 1411 204 23 62 chr6 139405238 139405546 -49874008 - AluJo SINE Alu -16 296 1 307 292 185 19 chr6 139405709 139405925 -49873629 + L1ME LINE L1 2093 2344 -3785 689 316 41 59 chr6 139405957 139406225 -49873329 + L1ME LINE L1 2517 2775 -3354 2227 120 0 0 chr6 139406225 139406524 -49873030 + AluSx SINE Alu 1 299 -13 689 316 41 59 chr6 139406524 139406698 -49872856 + L1ME LINE L1 2775 2951 -3178 1325 172 9 17 chr6 139406734 139406966 -49872588 + AluJo SINE Alu 82 311 -1 349 331 47 6 chr6 139407055 139407414 -49872140 + L1ME LINE L1 3313 3686 -2443 611 318 86 17 chr6 139407477 139408688 -49870866 + L1ME LINE L1 4160 5460 -685 25 31 0 0 chr6 139408698 139408730 -49870824 + AT_rich Low_complexity Low_complexity 1 32 0 691 272 7 35 chr6 139408836 139409126 -49870428 + L1ME LINE L1 5488 5769 -384 536 285 65 73 chr6 139409195 139409321 -49870233 - L1ME4a LINE L1 -28 6093 5967 2195 81 3 0 chr6 139409321 139409637 -49869917 - AluY SINE Alu 0 317 1 536 285 65 73 chr6 139409637 139409989 -49869565 - L1ME4a LINE L1 -154 5967 5618 269 332 31 36 chr6 139410215 139410408 -49869146 + L2 LINE L2 2394 2585 -729 22 0 0 0 chr6 139410454 139410476 -49869078 + AT_rich Low_complexity Low_complexity 1 22 0 663 288 91 31 chr6 139410713 139411280 -49868274 - L1ME3A LINE L1 -222 6017 5397 1848 184 63 29 chr6 139411280 139411692 -49867862 - MSTB LTR MaLR 0 426 1 663 288 91 31 chr6 139411692 139411745 -49867809 - L1ME3A LINE L1 -842 5397 5349 1478 89 17 55 chr6 139412051 139412288 -49867266 + MER30 DNA MER1_type 3 230 0 392 271 0 9 chr6 139412540 139412647 -49866907 - L1ME3A LINE L1 -4585 1811 1706 285 241 0 0 chr6 139412651 139412709 -49866845 + MER63 DNA MER1_type 1005 1062 0 216 97 0 0 chr6 139412764 139412795 -49866759 + (CA)n Simple_repeat Simple_repeat 1 31 0 565 226 13 93 chr6 139412963 139413189 -49866365 + MER34C LTR ERV1 1 208 -377 317 205 105 67 chr6 139413202 139413440 -49866114 + LTR48 LTR ERV1 377 576 -46 * 333 219 21 21 chr6 139413407 139413503 -49866051 + MER34 LTR ERV1 447 542 0 25 0 0 0 chr6 139413505 139413530 -49866024 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr6 139413686 139413714 -49865840 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr6 139413827 139413855 -49865699 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 139413925 139413953 -49865601 + AT_rich Low_complexity Low_complexity 1 28 0 3507 134 20 82 chr6 139414071 139414621 -49864933 - MER39 LTR ERV1 0 707 215 2046 109 63 38 chr6 139414621 139414781 -49864773 + THE1C LTR MaLR 1 156 -219 1728 122 115 14 chr6 139414781 139415059 -49864495 - AluSg SINE Alu -4 306 1 2046 109 63 38 chr6 139415059 139415264 -49864290 + THE1C LTR MaLR 156 375 0 3507 134 20 82 chr6 139415264 139415467 -49864087 - MER39 LTR ERV1 -492 215 1 22 0 0 0 chr6 139416040 139416062 -49863492 + AT_rich Low_complexity Low_complexity 1 22 0 184 323 105 38 chr6 139416220 139416353 -49863201 - L3b LINE CR1 -335 1248 1107 2182 134 0 0 chr6 139416593 139416899 -49862655 - AluSx SINE Alu -6 306 1 2494 177 212 92 chr6 139417558 139418469 -49861085 - LTR28 LTR ERV1 0 1020 1 1092 204 74 0 chr6 139418492 139418723 -49860831 + MER39 LTR ERV1 1 248 -459 1379 181 15 0 chr6 139418756 139419022 -49860532 + MER39 LTR ERV1 350 619 -88 2299 92 141 5 chr6 139419029 139419383 -49860171 + MLT2A1 LTR ERVL 1 414 -30 432 0 0 0 chr6 139419383 139419431 -49860123 + (TA)n Simple_repeat Simple_repeat 1 48 0 2299 92 141 5 chr6 139419431 139419467 -49860087 + MLT2A1 LTR ERVL 414 444 0 460 133 12 12 chr6 139419467 139419550 -49860004 + MER39 LTR ERV1 623 705 -2 860 179 128 15 chr6 139419786 139419981 -49859573 + MER20 DNA MER1_type 3 219 0 1931 119 4 0 chr6 139420493 139420754 -49858800 - AluSx SINE Alu -17 295 34 2010 129 25 68 chr6 139420765 139421056 -49858498 - MER39 LTR ERV1 0 639 438 2010 206 49 2 chr6 139421056 139421463 -49858091 + MSTB LTR MaLR 1 426 0 2010 129 25 68 chr6 139421463 139421639 -49857915 - MER39 LTR ERV1 -201 438 256 342 143 0 0 chr6 139421674 139421730 -49857824 - MER39 LTR ERV1 -651 56 1 405 0 0 0 chr6 139421768 139421813 -49857741 + (TG)n Simple_repeat Simple_repeat 2 46 0 353 231 218 20 chr6 139422871 139423018 -49856536 + MER5B DNA MER1_type 3 178 0 266 321 94 0 chr6 139423092 139423198 -49856356 - MIR SINE MIR -126 136 21 351 303 57 101 chr6 139423893 139424190 -49855364 + L2 LINE L2 2985 3268 -4 25 51 0 0 chr6 139424193 139424232 -49855322 + AT_rich Low_complexity Low_complexity 1 39 0 1412 185 136 52 chr6 139425127 139425532 -49854022 - MER82 DNA MER2_type -150 503 65 15237 129 16 7 chr6 139425581 139425635 -49853919 + Tigger1 DNA MER2_type 1 53 -2365 1929 93 63 7 chr6 139425635 139425905 -49853649 - AluSc SINE Alu -17 292 8 15237 129 16 7 chr6 139425905 139428244 -49851310 + Tigger1 DNA MER2_type 53 2416 -2 24 0 0 0 chr6 139429170 139429194 -49850360 + GC_rich Low_complexity Low_complexity 1 24 0 333 322 102 0 chr6 139429859 139429977 -49849577 + MER5B DNA MER1_type 7 136 -42 280 257 202 0 chr6 139430108 139430217 -49849337 - L2 LINE L2 -4 3309 3179 433 250 29 29 chr6 139430345 139430481 -49849073 - MIR SINE MIR -20 242 107 304 70 0 0 chr6 139430482 139430525 -49849029 + MADE1 DNA Mariner 1 43 -37 1869 171 7 7 chr6 139430774 139431073 -49848481 + AluJo SINE Alu 1 299 -13 1767 177 3 0 chr6 139431097 139431385 -49848169 + AluJb SINE Alu 18 306 -6 1432 218 132 22 chr6 139432382 139432837 -49846717 - MLT1D LTR MaLR 0 505 1 7051 141 18 16 chr6 139433350 139434428 -49845126 - Tigger1 DNA MER2_type 0 2418 1336 2402 99 61 3 chr6 139434428 139434772 -49844782 + THE1B LTR MaLR 1 364 0 7051 141 18 16 chr6 139434772 139434944 -49844610 - Tigger1 DNA MER2_type -1082 1336 1166 738 245 0 0 chr6 139434975 139435118 -49844436 - FRAM SINE Alu -35 141 1 6548 146 33 9 chr6 139435121 139435443 -49844111 - Tigger1 DNA MER2_type -1239 1179 866 2337 96 0 3 chr6 139435443 139435745 -49843809 - AluSx SINE Alu -11 301 1 6548 146 33 9 chr6 139435745 139436572 -49842982 - Tigger1 DNA MER2_type -1552 866 2 26 30 0 0 chr6 139436854 139436887 -49842667 + AT_rich Low_complexity Low_complexity 1 33 0 920 287 20 4 chr6 139437174 139437421 -49842133 + MIR SINE MIR 9 259 -3 326 319 183 21 chr6 139437431 139437622 -49841932 - MIR SINE MIR -40 222 1 1860 162 40 7 chr6 139437904 139438206 -49841348 + AluJo SINE Alu 1 312 0 2222 119 30 0 chr6 139438236 139438539 -49841015 + AluSx SINE Alu 1 312 0 480 339 36 0 chr6 139438551 139438719 -49840835 - MIR SINE MIR -84 178 5 468 271 59 0 chr6 139439559 139439677 -49839877 + FLAM_A SINE Alu 1 125 -8 217 180 20 0 chr6 139439678 139439728 -49839826 + (TA)n Simple_repeat Simple_repeat 2 52 0 482 256 17 28 chr6 139441114 139441294 -49838260 - MER34 LTR ERV1 0 542 365 231 108 0 194 chr6 139441535 139441567 -49837987 - MER34C LTR ERV1 -467 101 64 1639 151 74 27 chr6 139441567 139441865 -49837689 + AluJo SINE Alu 1 312 0 231 108 0 194 chr6 139441865 139441922 -49837632 - MER34C LTR ERV1 -504 64 20 2215 76 7 0 chr6 139443109 139443385 -49836169 - AluY SINE Alu -13 298 21 263 300 0 12 chr6 139443569 139443649 -49835905 + CT-rich Low_complexity Low_complexity 1 79 0 1425 243 140 18 chr6 139443653 139444110 -49835444 + L2 LINE L2 1913 2425 -889 2749 120 90 20 chr6 139444222 139444780 -49834774 - L1PBa LINE L1 -3948 2915 2319 5477 95 84 121 chr6 139444780 139446373 -49833181 - pTR5 LTR ERV1 -6 2432 743 4149 162 25 9 chr6 139446373 139447235 -49832319 - L1PBa LINE L1 -4527 2336 1461 843 223 45 24 chr6 139447335 139447582 -49831972 + LTR40a LTR ERVL 263 514 -5 508 332 101 0 chr6 139447586 139447785 -49831769 + MER115 DNA AcHobo 34 252 -441 880 177 40 29 chr6 139447890 139448065 -49831489 + MER5A DNA MER1_type 4 180 -9 2096 241 55 33 chr6 139448131 139448711 -49830843 + MLT1E LTR MaLR 1 593 0 1276 11 17 23 chr6 139448847 139448870 -49830684 + (TTTC)n Simple_repeat Simple_repeat 1 197 0 1276 11 17 23 chr6 139448870 139449046 -49830508 + (TTTC)n Simple_repeat Simple_repeat 1 175 0 629 236 56 22 chr6 139449103 139449281 -49830273 - AluJo SINE Alu -2 310 127 519 128 8 16 chr6 139449330 139449455 -49830099 + (TA)n Simple_repeat Simple_repeat 1 124 0 543 211 50 50 chr6 139449479 139449640 -49829914 + L2 LINE L2 3152 3312 -1 200 316 127 38 chr6 139450261 139450419 -49829135 + MIR3 SINE MIR 13 184 -24 227 222 0 0 chr6 139450464 139450509 -49829045 + (TA)n Simple_repeat Simple_repeat 2 46 0 371 343 99 5 chr6 139450763 139450964 -49828590 + MIR SINE MIR 7 226 -36 234 302 60 60 chr6 139450996 139451112 -49828442 - L2 LINE L2 0 3313 3198 211 227 0 0 chr6 139451808 139451852 -49827702 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 585 277 92 10 chr6 139451852 139452047 -49827507 + L2 LINE L2 3085 3295 -18 222 37 0 0 chr6 139452061 139452088 -49827466 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 28 0 0 0 chr6 139452170 139452198 -49827356 + AT_rich Low_complexity Low_complexity 1 28 0 1950 155 0 16 chr6 139453571 139453888 -49825666 + AluJb SINE Alu 1 312 0 333 332 68 42 chr6 139454240 139454430 -49825124 - MIR3 SINE MIR -7 201 7 23 54 0 0 chr6 139454492 139454529 -49825025 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr6 139454863 139454892 -49824662 + AT_rich Low_complexity Low_complexity 1 29 0 399 298 36 73 chr6 139454998 139455158 -49824396 - L2 LINE L2 0 3313 3162 2095 122 0 0 chr6 139455158 139455477 -49824077 + AluSg SINE Alu 1 319 0 399 298 36 73 chr6 139455477 139455562 -49823992 - L2 LINE L2 -151 3162 3075 374 119 0 15 chr6 139457359 139457426 -49822128 + (CA)n Simple_repeat Simple_repeat 1 66 0 26 74 0 0 chr6 139457947 139458001 -49821553 + AT_rich Low_complexity Low_complexity 1 54 0 273 253 53 13 chr6 139458426 139458501 -49821053 - L2 LINE L2 0 3272 3195 299 221 48 77 chr6 139459565 139459669 -49819885 - MIR SINE MIR -72 190 90 2170 138 0 3 chr6 139460013 139460318 -49819236 + AluSx SINE Alu 1 304 -8 27 0 0 0 chr6 139460740 139460767 -49818787 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr6 139461646 139461681 -49817873 + AT_rich Low_complexity Low_complexity 1 35 0 397 323 104 8 chr6 139462101 139462420 -49817134 + L1M4 LINE L1 2630 2975 -3171 367 200 117 48 chr6 139462435 139462580 -49816974 + L1M4 LINE L1 3052 3206 -2940 2183 107 28 0 chr6 139462712 139463001 -49816553 - AluSg SINE Alu -13 297 1 1053 204 23 9 chr6 139463027 139463248 -49816306 - MER58A DNA MER1_type 0 224 1 353 290 62 40 chr6 139463899 139464210 -49815344 + L1MC4a LINE L1 5284 5597 -721 332 301 41 86 chr6 139464245 139464514 -49815040 + L1MC4a LINE L1 5675 5931 -1877 246 219 27 14 chr6 139464529 139464602 -49814952 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 429 269 12 53 chr6 139465400 139465571 -49813983 + MER112 DNA MER1_type 91 254 -6 3154 150 37 0 chr6 139467254 139467762 -49811792 - MER1A DNA MER1_type 0 527 1 537 299 50 33 chr6 139469767 139470008 -49809546 - MIR SINE MIR 0 262 18 25 51 0 0 chr6 139470507 139470546 -49809008 + AT_rich Low_complexity Low_complexity 1 39 0 241 291 86 0 chr6 139470615 139470732 -49808822 - L2 LINE L2 0 3272 3146 180 0 0 0 chr6 139470841 139470861 -49808693 + (T)n Simple_repeat Simple_repeat 1 20 0 189 318 98 47 chr6 139471182 139471418 -49808136 + L2 LINE L2 2672 2919 -395 226 186 0 0 chr6 139471455 139471498 -49808056 - U6 snRNA snRNA -61 46 4 1460 223 69 45 chr6 139471665 139472237 -49807317 - LTR24B LTR ERV1 0 635 1 389 319 132 55 chr6 139472440 139472819 -49806735 + L2 LINE L2 2873 3280 -33 361 322 16 8 chr6 139472852 139472973 -49806581 - MER5A DNA MER1_type 0 189 68 619 229 17 34 chr6 139475594 139475769 -49803785 + MER20 DNA MER1_type 46 217 -2 2231 109 3 3 chr6 139476220 139476522 -49803032 + AluSq SINE Alu 1 302 -11 1119 246 73 38 chr6 139477614 139478177 -49801377 - LTR24B LTR ERV1 -7 569 1 275 314 108 0 chr6 139478179 139478364 -49801190 - L1MC/D LINE L1 -1992 5816 5612 395 278 46 46 chr6 139478394 139478588 -49800966 - L1MC/D LINE L1 -818 5541 5348 225 132 0 0 chr6 139479378 139479416 -49800138 + (GGAGAA)n Simple_repeat Simple_repeat 6 43 0 2036 109 0 0 chr6 139479578 139479844 -49799710 - AluSq SINE Alu -8 305 40 2485 56 0 0 chr6 139481294 139481596 -49797958 - AluY SINE Alu -9 302 1 463 319 20 44 chr6 139484104 139484241 -49795313 + MIR SINE MIR 20 152 -110 1985 227 115 2 chr6 139484241 139484703 -49794851 + LTR40a LTR ERVL 4 517 -2 463 319 20 44 chr6 139484703 139484769 -49794785 + MIR SINE MIR 152 218 -44 27 29 0 0 chr6 139486698 139486732 -49792822 + AT_rich Low_complexity Low_complexity 1 34 0 237 65 0 0 chr6 139487041 139487072 -49792482 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 200 318 0 0 chr6 139487556 139487600 -49791954 - L2 LINE L2 -19 3253 3210 * 511 262 131 28 chr6 139487569 139487783 -49791771 - MIR SINE MIR -26 236 1 438 20 0 0 chr6 139488074 139488125 -49791429 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 446 197 34 8 chr6 139488146 139488263 -49791291 - MER104 DNA Tc2 -32 148 29 26 0 0 0 chr6 139488961 139488987 -49790567 + AT_rich Low_complexity Low_complexity 1 26 0 886 264 125 28 chr6 139490650 139491123 -49788431 - LTR33 LTR ERVL 0 521 3 327 259 178 13 chr6 139491640 139491813 -49787741 - MIR3 SINE MIR -36 172 10 228 260 120 20 chr6 139493022 139493122 -49786432 + L1ME2 LINE L1 5523 5632 -489 393 75 0 0 chr6 139493337 139493390 -49786164 + (TA)n Simple_repeat Simple_repeat 1 53 0 3592 140 0 4 chr6 139493977 139494506 -49785048 - MER1A DNA MER1_type 0 527 1 1057 251 75 49 chr6 139494620 139495527 -49784027 - L1ME3 LINE L1 -211 5934 5006 1472 194 85 9 chr6 139495609 139495928 -49783626 - MER61A LTR ERV1 0 343 1 300 215 149 0 chr6 139496103 139496210 -49783344 - MLT1L LTR MaLR -77 538 416 538 299 51 68 chr6 139496273 139496842 -49782712 - L1ME3 LINE L1 -5557 562 4 2824 118 158 4 chr6 139499406 139499956 -49779598 + LTR24C LTR ERV1 1 635 0 2430 98 0 0 chr6 139500244 139500549 -49779005 + AluSx SINE Alu 1 305 -7 243 0 0 0 chr6 139501288 139501315 -49778239 + (TC)n Simple_repeat Simple_repeat 1 27 0 3489 150 52 14 chr6 139501693 139502341 -49777213 - L1MB5 LINE L1 -17 6157 5485 200 318 73 88 chr6 139502562 139502754 -49776800 + MER5A DNA MER1_type 1 189 0 1163 214 43 55 chr6 139504701 139505225 -49774329 + L1ME2 LINE L1 5651 6334 0 427 300 150 0 chr6 139505236 139505376 -49774178 + L2 LINE L2 1044 1204 -2110 868 141 0 15 chr6 139505376 139505511 -49774043 + FLAM_C SINE Alu 1 133 0 304 244 45 39 chr6 139505594 139505750 -49773804 + L1ME4a LINE L1 5962 6118 -3 2034 111 0 7 chr6 139506643 139506923 -49772631 + AluSc SINE Alu 22 299 -10 237 33 0 0 chr6 139508423 139508453 -49771101 + (TTG)n Simple_repeat Simple_repeat 2 31 0 278 330 51 8 chr6 139508665 139508783 -49770771 + MIR SINE MIR 130 252 -10 * 452 358 108 0 chr6 139508762 139508994 -49770560 - L2 LINE L2 -882 2432 2176 1614 205 0 4 chr6 139511632 139511910 -49767644 + AluJb SINE Alu 5 281 -31 321 26 0 0 chr6 139511913 139511951 -49767603 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1303 117 43 43 chr6 139512127 139512357 -49767197 + MER30 DNA MER1_type 1 230 0 616 219 0 17 chr6 139512577 139512696 -49766858 + FLAM_A SINE Alu 1 117 -25 353 239 190 7 chr6 139512877 139513019 -49766535 + MIR3 SINE MIR 34 201 -7 1465 246 90 27 chr6 139513824 139514300 -49765254 - L2 LINE L2 -356 2958 2453 1501 122 52 0 chr6 139514518 139514625 -49764929 - AluSx SINE Alu -69 243 143 240 35 0 0 chr6 139514625 139514654 -49764900 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1501 122 52 0 chr6 139514654 139514775 -49764779 - AluSx SINE Alu -169 143 3 2470 97 37 0 chr6 139515180 139515530 -49764024 - L1PB1 LINE L1 -3 6205 5843 13286 186 30 13 chr6 139515665 139516113 -49763441 - L1PB1 LINE L1 -366 5842 5403 2184 112 53 34 chr6 139516113 139516470 -49763084 - THE1B LTR MaLR 0 364 1 13286 186 30 13 chr6 139516470 139519669 -49759885 - L1PB1 LINE L1 -805 5403 1977 197 62 0 31 chr6 139519669 139519701 -49759853 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 13286 186 30 13 chr6 139519701 139521706 -49757848 - L1PB1 LINE L1 -4231 1977 8 8100 184 19 20 chr6 139521677 139523317 -49756237 - L1PBa LINE L1 -5223 1640 2 * 218 352 148 0 chr6 139524398 139524526 -49755028 - L2 LINE L2 -3 3269 3123 22 56 0 0 chr6 139525934 139525970 -49753584 + AT_rich Low_complexity Low_complexity 1 36 0 2111 133 0 40 chr6 139526214 139526537 -49753017 + AluSx SINE Alu 1 310 -2 30 0 0 0 chr6 139526590 139526620 -49752934 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr6 139526814 139526850 -49752704 + AT_rich Low_complexity Low_complexity 1 36 0 521 299 7 14 chr6 139527029 139527176 -49752378 - MER5A DNA MER1_type -1 188 43 21 0 0 0 chr6 139527762 139527783 -49751771 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 139529429 139529460 -49750094 + AT_rich Low_complexity Low_complexity 1 31 0 451 306 145 5 chr6 139530730 139530923 -49748631 + MIR SINE MIR 23 242 -20 410 289 47 47 chr6 139531193 139531342 -49748212 + MIR3 SINE MIR 32 180 -28 2102 111 17 7 chr6 139532884 139533181 -49746373 + AluSx SINE Alu 1 300 -12 299 350 92 14 chr6 139535709 139535926 -49743628 - L3b LINE CR1 -246 1337 1104 191 283 76 22 chr6 139536277 139536369 -49743185 - L3 LINE CR1 -843 734 638 748 200 24 24 chr6 139537168 139537338 -49742216 + MER58B DNA MER1_type 30 199 -142 2183 128 0 3 chr6 139537340 139537653 -49741901 + AluSx SINE Alu 1 312 0 1216 39 11 28 chr6 139537656 139537687 -49741867 + (GAAA)n Simple_repeat Simple_repeat 1 209 0 1216 39 11 28 chr6 139537687 139537869 -49741685 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 596 237 36 0 chr6 139537892 139538031 -49741523 + MER58B DNA MER1_type 196 339 -2 21 36 0 0 chr6 139538042 139538070 -49741484 + AT_rich Low_complexity Low_complexity 1 28 0 2754 119 5 11 chr6 139538698 139539075 -49740479 - THE1C LTR MaLR 0 375 1 1776 149 14 14 chr6 139540389 139540677 -49738877 + AluJo SINE Alu 1 288 -24 2215 173 45 30 chr6 139542275 139542645 -49736909 + Tigger2a DNA MER2_type 1 379 -2329 2291 117 0 0 chr6 139542645 139542954 -49736600 - AluSg1 SINE Alu 0 309 1 2215 173 45 30 chr6 139542954 139543010 -49736544 + Tigger2a DNA MER2_type 379 433 -1 2058 123 0 10 chr6 139543195 139543487 -49736067 + AluSx SINE Alu 1 289 -23 192 102 61 0 chr6 139544004 139544053 -49735501 + (TA)n Simple_repeat Simple_repeat 1 52 0 283 143 0 0 chr6 139544316 139544358 -49735196 + LTR18A LTR ERVL 1 42 -315 2373 150 8 3 chr6 139544358 139544717 -49734837 + HERVL18 LTR ERVL 5687 6047 0 2238 162 53 0 chr6 139544718 139545057 -49734497 + LTR18A LTR ERVL 1 357 0 1174 185 5 14 chr6 139545070 139545292 -49734262 + HERVL18 LTR ERVL 8 227 -5820 * 35210 155 14 21 chr6 139545281 139550929 -49728625 + HERVL18 LTR ERVL 443 6047 0 2437 139 53 0 chr6 139550930 139551269 -49728285 + LTR18A LTR ERVL 1 357 0 393 348 135 8 chr6 139555470 139555737 -49723817 - L2 LINE L2 -584 2730 2430 704 114 145 8 chr6 139556348 139556479 -49723075 + L1MA8 LINE L1 6143 6291 0 12411 115 23 47 chr6 139556763 139558881 -49720673 + L1PA7 LINE L1 8 2153 -4308 2316 108 0 3 chr6 139558881 139559195 -49720359 + AluSq SINE Alu 1 313 0 12411 115 23 47 chr6 139559195 139559793 -49719761 + L1PA7 LINE L1 2153 2764 -3697 12212 83 0 0 chr6 139559793 139562142 -49717412 + L1PA7 LINE L1 4115 6467 -2 261 331 60 37 chr6 139562316 139562666 -49716888 + HAL1b LINE L1 72 429 -919 281 270 137 33 chr6 139562847 139563154 -49716400 + HAL1b LINE L1 478 816 -532 291 226 46 154 chr6 139563242 139563437 -49716117 + L1MC4a LINE L1 6414 6587 -1221 242 338 74 14 chr6 139563452 139563600 -49715954 + L1MC5 LINE L1 6674 6830 -1131 * 960 236 160 25 chr6 139563593 139564025 -49715529 + L1MC5 LINE L1 7037 7526 -435 364 242 49 48 chr6 139564120 139564322 -49715232 + L1ME3 LINE L1 5965 6170 0 8099 13 0 0 chr6 139565382 139566312 -49713242 + L1HS LINE L1 5226 6155 0 227 54 27 0 chr6 139566314 139566351 -49713203 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 851 194 122 0 chr6 139567034 139567214 -49712340 - MIR SINE MIR -21 241 40 638 252 170 4 chr6 139567330 139567560 -49711994 + MLT1C LTR MaLR 59 326 -141 374 340 57 19 chr6 139568070 139568149 -49711405 - MIR SINE MIR -32 230 155 1031 258 46 21 chr6 139568149 139568478 -49711076 - MER46C DNA MER2_type -1 337 1 374 340 57 19 chr6 139568478 139568607 -49710947 - MIR SINE MIR -107 155 14 287 228 106 56 chr6 139569187 139569374 -49710180 - MIR3 SINE MIR -20 242 20 423 311 82 38 chr6 139570274 139570541 -49709013 - L3 LINE CR1 -2 1575 1297 523 359 6 0 chr6 139571514 139571670 -49707884 - L3 LINE CR1 -467 1110 954 824 197 48 57 chr6 139572187 139572427 -49707127 + MIR SINE MIR 11 249 -13 191 194 0 0 chr6 139572427 139572463 -49707091 + MIR SINE MIR 223 258 -4 349 246 0 0 chr6 139572876 139572937 -49706617 - MER2 DNA MER2_type -1 344 284 1135 160 55 5 chr6 139572965 139573165 -49706389 - MER2 DNA MER2_type -135 210 1 475 150 12 0 chr6 139574350 139574430 -49705124 - LTR5 LTR ERVK -885 84 4 820 107 113 20 chr6 139574923 139575073 -49704481 + L1PA16 LINE L1 6002 6165 -1 339 117 0 50 chr6 139575083 139575143 -49704411 + MSTB LTR MaLR 370 426 0 * 1718 214 41 8 chr6 139575143 139575526 -49704028 + MER110 LTR ERV1 96 491 0 22 0 0 0 chr6 139575710 139575732 -49703822 + AT_rich Low_complexity Low_complexity 1 22 0 2170 100 14 0 chr6 139575920 139576210 -49703344 + AluSx SINE Alu 1 294 -18 218 345 79 30 chr6 139576583 139576748 -49702806 + L2 LINE L2 2866 3038 -234 198 0 0 0 chr6 139578260 139578282 -49701272 + (CA)n Simple_repeat Simple_repeat 2 23 0 225 0 0 0 chr6 139578300 139578325 -49701229 + (CA)n Simple_repeat Simple_repeat 1 25 0 767 212 0 4 chr6 139578792 139579076 -49700478 + CT-rich Low_complexity Low_complexity 1 282 0 516 62 0 0 chr6 139579199 139579263 -49700291 + MER72 LTR ERV1 659 722 0 1568 271 202 16 chr6 139579266 139579959 -49699595 - L2 LINE L2 -1106 2208 1387 943 251 90 46 chr6 139579959 139580325 -49699229 - MLT1I LTR MaLR -10 399 18 206 227 0 45 chr6 139580326 139580352 -49699202 - L2 LINE L2 -1954 1360 1334 1944 128 209 14 chr6 139580352 139580710 -49698844 + MSTA LTR MaLR 1 428 0 206 227 0 45 chr6 139580710 139580749 -49698805 - L2 LINE L2 -1980 1334 1298 793 141 134 27 chr6 139580884 139581033 -49698521 + FRAM SINE Alu 1 164 -12 1858 204 81 42 chr6 139581694 139582174 -49697380 + MLT1D LTR MaLR 7 505 0 317 305 130 43 chr6 139582674 139582901 -49696653 - MIR SINE MIR -1 261 18 717 280 23 19 chr6 139583175 139583389 -49696165 + MER20 DNA MER1_type 1 215 -4 325 250 150 14 chr6 139585297 139585437 -49694117 - MIR SINE MIR -21 241 83 210 311 135 0 chr6 139585942 139586016 -49693538 + L2 LINE L2 3149 3232 -40 2124 108 3 3 chr6 139586180 139586466 -49693088 + AluSx SINE Alu 3 288 -24 2017 103 36 7 chr6 139586534 139586815 -49692739 - AluSc SINE Alu -20 289 1 737 180 0 0 chr6 139588368 139588490 -49691064 - FLAM_C SINE Alu -21 122 1 23 33 0 0 chr6 139588521 139588551 -49691003 + AT_rich Low_complexity Low_complexity 1 30 0 195 367 0 17 chr6 139588636 139588696 -49690858 - MIR SINE MIR -61 147 89 378 349 47 0 chr6 139589361 139589533 -49690021 - MIR SINE MIR -81 181 2 180 125 0 0 chr6 139589704 139589736 -49689818 + (CA)n Simple_repeat Simple_repeat 2 33 0 280 309 3 6 chr6 139589736 139589840 -49689714 - MIR SINE MIR -90 118 16 252 0 0 0 chr6 139589864 139589892 -49689662 + (A)n Simple_repeat Simple_repeat 1 28 0 2034 136 10 0 chr6 139589966 139590260 -49689294 + AluSx SINE Alu 1 297 -15 256 244 103 0 chr6 139590682 139590760 -49688794 + MIR3 SINE MIR 91 176 -32 207 276 115 35 chr6 139591854 139591941 -49687613 - L3 LINE CR1 -146 1431 1338 250 357 20 20 chr6 139591978 139592076 -49687478 - L2 LINE L2 -20 3252 3155 254 234 0 117 chr6 139592282 139592393 -49687161 - L3 LINE CR1 -283 1294 1197 198 167 0 0 chr6 139592769 139592805 -49686749 + GA-rich Low_complexity Low_complexity 2 37 0 23 0 0 0 chr6 139593218 139593241 -49686313 + AT_rich Low_complexity Low_complexity 1 23 0 433 209 0 35 chr6 139594239 139594325 -49685229 + AluJb SINE Alu 35 117 -195 1688 99 0 5 chr6 139594427 139594649 -49684905 - AluSq SINE Alu -8 305 85 2180 95 0 17 chr6 139594962 139595256 -49684298 - AluSc SINE Alu -20 289 1 235 267 30 38 chr6 139595411 139595542 -49684012 + L1ME LINE L1 5766 5895 -226 25 0 0 0 chr6 139595714 139595739 -49683815 + AT_rich Low_complexity Low_complexity 1 25 0 19971 19 0 0 chr6 139595765 139598894 -49680660 + L1HS LINE L1 3027 6155 0 35 0 0 0 chr6 139599375 139599410 -49680144 + AT_rich Low_complexity Low_complexity 1 35 0 828 185 53 0 chr6 139599413 139599564 -49679990 - FRAM SINE Alu -7 159 1 198 200 0 25 chr6 139599691 139599731 -49679823 + MIR SINE MIR 7 45 -217 527 325 43 55 chr6 139599829 139600084 -49679470 + MER115 DNA AcHobo 114 365 -328 232 298 0 0 chr6 139600108 139600155 -49679399 + L2 LINE L2 3210 3256 -16 1678 172 32 0 chr6 139601241 139601526 -49678028 - AluJo SINE Alu -18 294 1 279 296 227 6 chr6 139601681 139601857 -49677697 - L3b LINE CR1 -259 1324 1110 27 0 0 0 chr6 139602032 139602059 -49677495 + AT_rich Low_complexity Low_complexity 1 27 0 473 310 61 61 chr6 139602604 139602833 -49676721 + MIR SINE MIR 34 262 0 1780 196 0 0 chr6 139602952 139603263 -49676291 + AluJb SINE Alu 1 311 -1 876 279 36 16 chr6 139603965 139604216 -49675338 + MIR SINE MIR 7 262 0 21 36 0 0 chr6 139604567 139604595 -49674959 + AT_rich Low_complexity Low_complexity 1 28 0 777 274 29 67 chr6 139604605 139604919 -49674635 + MLT1J2 LTR MaLR 119 420 -30 1421 251 47 38 chr6 139606029 139606475 -49673079 + MLT1J2 LTR MaLR 1 450 0 1715 247 117 31 chr6 139606496 139607044 -49672510 - L2 LINE L2 -227 3086 2467 339 25 0 0 chr6 139607044 139607084 -49672470 + (CA)n Simple_repeat Simple_repeat 2 41 0 1715 247 117 31 chr6 139607084 139607241 -49672313 - L2 LINE L2 -846 2467 2325 626 297 66 66 chr6 139607298 139607618 -49671936 + L2 LINE L2 2944 3263 -9 219 114 0 0 chr6 139607620 139607655 -49671899 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 1027 163 0 12 chr6 139607805 139607971 -49671583 - FRAM SINE Alu -15 161 1 2683 235 71 71 chr6 139608256 139608527 -49671027 - L1MC5 LINE L1 -70 7891 7621 342 0 0 0 chr6 139608527 139608565 -49670989 + (TG)n Simple_repeat Simple_repeat 2 39 0 2683 235 71 71 chr6 139608565 139609533 -49670021 - L1MC5 LINE L1 -339 7622 6652 5526 144 16 14 chr6 139609699 139610919 -49668635 - L1MB1 LINE L1 -1 6167 4942 2081 59 0 0 chr6 139610921 139611174 -49668380 - AluY SINE Alu 0 311 59 272 261 147 32 chr6 139611280 139611498 -49668056 + L1ME LINE L1 5563 5805 -316 28 0 0 0 chr6 139612530 139612558 -49666996 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr6 139613304 139613352 -49666202 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr6 139615804 139615828 -49663726 + AT_rich Low_complexity Low_complexity 1 24 0 14899 27 3 0 chr6 139667017 139669567 -49609987 - L1PA4 LINE L1 -2 6153 3597 22 0 0 0 chr6 139670431 139670453 -49609101 + AT_rich Low_complexity Low_complexity 1 22 0 348 357 108 0 chr6 139671676 139671973 -49607581 + L2 LINE L2 2044 2372 -942 2009 135 0 0 chr6 139672085 139672374 -49607180 - AluSx SINE Alu -23 289 1 858 304 74 57 chr6 139673076 139674044 -49605510 + L1MEc LINE L1 798 1782 -4614 1077 271 60 33 chr6 139674155 139674959 -49604595 + L1MEc LINE L1 1953 2743 -3472 842 285 140 34 chr6 139674961 139675835 -49603719 + L1MEc LINE L1 2758 3723 -2492 1922 131 35 3 chr6 139675894 139676184 -49603370 + AluJb SINE Alu 1 299 -13 23 33 0 0 chr6 139676218 139676248 -49603306 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr6 139677166 139677199 -49602355 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr6 139678558 139678591 -49600963 + AT_rich Low_complexity Low_complexity 1 33 0 1276 161 18 0 chr6 139678671 139678894 -49600660 - MER30 DNA MER1_type 0 230 4 22 0 0 0 chr6 139679118 139679140 -49600414 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 139679564 139679586 -49599968 + AT_rich Low_complexity Low_complexity 1 22 0 2267 107 0 7 chr6 139680651 139680960 -49598594 + AluSg SINE Alu 1 307 -3 2292 298 94 57 chr6 139682163 139683595 -49595959 - L2 LINE L2 -531 2783 1300 376 219 84 8 chr6 139683923 139684042 -49595512 + L1ME LINE L1 5646 5773 -348 337 330 54 73 chr6 139684139 139684547 -49595007 + L2 LINE L2 2787 3184 -129 366 103 39 0 chr6 139684617 139684695 -49594859 + (TA)n Simple_repeat Simple_repeat 2 82 0 198 103 0 0 chr6 139686489 139686518 -49593036 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 209 388 92 39 chr6 139686518 139686907 -49592647 - L2 LINE L2 -5 3267 2858 227 125 0 0 chr6 139687368 139687400 -49592154 - MER70A LTR ERVL 0 472 441 * 2842 168 28 13 chr6 139687398 139687867 -49591687 - MER70B LTR ERVL -102 476 1 1433 181 43 50 chr6 139688049 139688352 -49591202 + AluJo SINE Alu 3 303 -9 678 155 11 48 chr6 139688354 139688541 -49591013 + G-rich Low_complexity Low_complexity 1 180 0 372 172 35 28 chr6 139688507 139688652 -49590902 + GA-rich Low_complexity Low_complexity 2 147 0 * 303 240 101 23 chr6 139688679 139688808 -49590746 + LTR33A LTR ERVL 385 523 0 470 328 95 12 chr6 139689631 139689869 -49589685 + MLT1J2 LTR MaLR 62 319 -131 296 340 10 0 chr6 139689869 139689966 -49589588 + Charlie1 DNA MER1_type 1 98 -2663 2591 186 41 52 chr6 139689974 139690707 -49588847 + Charlie1 DNA MER1_type 2033 2757 -4 280 268 12 0 chr6 139690752 139690834 -49588720 + MLT1J1 LTR MaLR 364 446 0 425 342 131 44 chr6 139692356 139692877 -49586677 + L2 LINE L2 2412 2977 -337 290 291 138 57 chr6 139693121 139693331 -49586223 + MIR SINE MIR 34 260 -2 288 224 56 47 chr6 139693381 139693488 -49586066 + L2 LINE L2 3118 3225 -88 1603 177 17 24 chr6 139693898 139694192 -49585362 - AluJb SINE Alu -17 295 4 229 196 20 20 chr6 139694909 139694960 -49584594 - MER94 DNA DNA -83 51 1 8415 128 12 1 chr6 139695131 139696406 -49583148 - HSMAR2 DNA Mariner -7 1295 7 969 248 33 0 chr6 139697179 139697389 -49582165 + MER20 DNA MER1_type 3 219 0 443 243 264 0 chr6 139697604 139697752 -49581802 - MER5A DNA MER1_type -2 187 1 2992 226 13 5 chr6 139697857 139698471 -49581083 - MER82 DNA MER2_type 0 653 35 207 200 0 22 chr6 139698931 139698976 -49580578 + CT-rich Low_complexity Low_complexity 2 45 0 288 0 0 0 chr6 139698985 139699017 -49580537 + (TG)n Simple_repeat Simple_repeat 1 32 0 311 140 0 0 chr6 139700697 139700747 -49578807 + L2 LINE L2 3262 3311 -2 339 276 86 9 chr6 139701506 139701622 -49577932 + L2 LINE L2 3189 3313 0 23 0 0 0 chr6 139702034 139702057 -49577497 + AT_rich Low_complexity Low_complexity 1 23 0 606 165 0 0 chr6 139702186 139702283 -49577271 + FRAM SINE Alu 63 159 -17 222 375 62 0 chr6 139702673 139702769 -49576785 + MIR3 SINE MIR 14 115 -93 485 361 46 12 chr6 139703057 139703298 -49576256 - MIR SINE MIR -6 256 8 890 242 124 57 chr6 139703682 139703722 -49575832 - MLT2D LTR ERVL 0 414 378 691 40 0 30 chr6 139703722 139703823 -49575731 + (TAGA)n Simple_repeat Simple_repeat 2 99 0 890 242 124 57 chr6 139703823 139704170 -49575384 - MLT2D LTR ERVL -36 378 1 607 154 45 0 chr6 139705210 139705320 -49574234 - L2 LINE L2 -9 3304 3190 33 0 0 0 chr6 139705509 139705542 -49574012 + AT_rich Low_complexity Low_complexity 1 33 0 261 94 0 75 chr6 139705652 139705705 -49573849 + L1MA1 LINE L1 6036 6084 -218 201 74 0 0 chr6 139705706 139705733 -49573821 + (A)n Simple_repeat Simple_repeat 1 27 0 31 26 0 0 chr6 139706529 139706567 -49572987 + AT_rich Low_complexity Low_complexity 1 38 0 235 318 47 23 chr6 139706982 139707111 -49572443 - MIR SINE MIR -78 184 53 2617 45 0 0 chr6 139707249 139707558 -49571996 + AluY SINE Alu 1 309 -2 1988 157 0 0 chr6 139708203 139708502 -49571052 - AluSx SINE Alu -13 299 1 630 206 63 46 chr6 139709412 139709587 -49569967 - MER5B DNA MER1_type 0 178 1 30 0 0 0 chr6 139709952 139709982 -49569572 + AT_rich Low_complexity Low_complexity 1 30 0 229 304 167 10 chr6 139710041 139710143 -49569411 - L1ME3A LINE L1 -91 6473 6356 966 265 103 29 chr6 139710227 139710618 -49568936 - L1ME3A LINE L1 -233 6331 5971 989 263 0 0 chr6 139710618 139710842 -49568712 + MER58A DNA MER1_type 1 224 0 966 265 103 29 chr6 139710842 139711257 -49568297 - L1ME3A LINE L1 -593 5971 5466 905 194 28 6 chr6 139711311 139711491 -49568063 + MER20 DNA MER1_type 33 216 -3 796 274 112 24 chr6 139711546 139711842 -49567712 - L1ME3A LINE L1 -1137 5403 5135 2512 131 5 17 chr6 139711842 139712246 -49567308 + L1PA15 LINE L1 5762 6160 -5 796 274 112 24 chr6 139712246 139712627 -49566927 - L1ME3A LINE L1 -1405 5135 4666 445 264 69 7 chr6 139712857 139713001 -49566553 - L2 LINE L2 -5 3308 3156 261 274 67 0 chr6 139713031 139713191 -49566363 - L1MDa LINE L1 -5092 1438 1258 366 315 39 8 chr6 139714181 139714311 -49565243 + L2 LINE L2 3180 3313 0 796 150 0 8 chr6 139714821 139714954 -49564600 - FLAM_C SINE Alu 0 133 2 414 0 0 0 chr6 139715289 139715335 -49564219 + (TG)n Simple_repeat Simple_repeat 2 47 0 2221 229 89 45 chr6 139715364 139716506 -49563048 - L1ME1 LINE L1 -4 6556 5368 * 43121 39 5 1 chr6 139716495 139722565 -49556989 - L1PA4 LINE L1 -1 6154 57 4314 250 76 31 chr6 139722573 139724272 -49555282 - L1ME1 LINE L1 -1182 5358 3575 4192 205 27 20 chr6 139724272 139725127 -49554427 - MER21B LTR ERV1 -2 861 1 4314 250 76 31 chr6 139725127 139725205 -49554349 - L1ME1 LINE L1 -2965 3575 3502 491 165 0 0 chr6 139725235 139725320 -49554234 - L1ME1 LINE L1 -4989 1551 1467 595 293 49 10 chr6 139725345 139725550 -49554004 + L1MDa LINE L1 21 233 -6307 1380 204 52 21 chr6 139725668 139725957 -49553597 + AluJo SINE Alu 1 298 -14 3016 231 46 17 chr6 139725970 139726750 -49552804 + L1MDa LINE L1 665 1467 -5073 189 0 0 0 chr6 139726796 139726817 -49552737 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 202 414 0 9 chr6 139727210 139727321 -49552233 + MIR SINE MIR 3 112 -150 323 60 20 0 chr6 139727461 139727511 -49552043 + (TG)n Simple_repeat Simple_repeat 2 52 0 258 107 36 50 chr6 139727757 139727897 -49551657 + (TA)n Simple_repeat Simple_repeat 1 138 0 189 0 0 0 chr6 139730377 139730398 -49549156 + (A)n Simple_repeat Simple_repeat 1 21 0 853 223 62 35 chr6 139731042 139731298 -49548256 - MER34 LTR ERV1 -279 263 1 29 47 0 0 chr6 139731427 139731470 -49548084 + AT_rich Low_complexity Low_complexity 1 43 0 360 327 55 12 chr6 139732581 139732746 -49546808 + MIR SINE MIR 2 173 -89 1191 179 27 143 chr6 139732845 139733258 -49546296 + MLT1A1 LTR MaLR 1 365 0 1997 80 4 4 chr6 139733302 139733565 -49545989 - AluY SINE Alu -16 295 33 3486 146 58 36 chr6 139733578 139733688 -49545866 - L1MA9 LINE L1 -31 6281 6175 192 77 0 0 chr6 139733688 139733714 -49545840 + (TG)n Simple_repeat Simple_repeat 1 26 0 3486 146 58 36 chr6 139733714 139734327 -49545227 - L1MA9 LINE L1 -137 6175 5542 372 209 0 0 chr6 139734325 139734392 -49545162 + L1ME1 LINE L1 4809 4875 -1271 * 250 132 0 0 chr6 139734398 139734436 -49545118 - MLT1G1 LTR MaLR -557 38 1 2023 201 27 27 chr6 139734524 139735165 -49544389 + L1M2 LINE L1 4888 5540 -743 555 234 9 0 chr6 139735405 139735516 -49544038 + MLT1G1 LTR MaLR 1 112 -483 1808 232 79 18 chr6 139735552 139735991 -49543563 + L1ME1 LINE L1 5050 5554 -612 2401 120 28 14 chr6 139735991 139736350 -49543204 + THE1B LTR MaLR 1 364 0 1808 232 79 18 chr6 139736350 139736678 -49542876 + L1ME1 LINE L1 5554 5860 -306 432 208 47 0 chr6 139736698 139736804 -49542750 + L1MA10 LINE L1 6210 6320 -14 355 214 122 77 chr6 139736835 139737031 -49542523 + MIR SINE MIR 56 260 -2 36 23 0 0 chr6 139737206 139737249 -49542305 + AT_rich Low_complexity Low_complexity 1 43 0 1838 144 7 30 chr6 139738349 139738654 -49540900 - AluSq SINE Alu -15 298 1 730 275 104 64 chr6 139739617 139740121 -49539433 - MLT1H1 LTR MaLR 0 595 41 224 238 0 0 chr6 139740160 139740202 -49539352 + (CA)n Simple_repeat Simple_repeat 2 43 0 251 211 183 0 chr6 139740813 139740884 -49538670 - MER106B DNA MER1_type -73 986 903 965 165 6 22 chr6 139741762 139741944 -49537610 + AluJb SINE Alu 134 312 0 290 352 85 11 chr6 139744234 139744534 -49535020 - L2 LINE L2 -1 3312 2942 838 255 34 17 chr6 139744714 139744953 -49534601 - MIR SINE MIR -1 261 19 883 270 162 17 chr6 139745882 139746638 -49532916 + L2 LINE L2 2452 3313 0 344 223 33 25 chr6 139746745 139746866 -49532688 + CT-rich Low_complexity Low_complexity 2 123 0 231 36 0 0 chr6 139747172 139747200 -49532354 + (T)n Simple_repeat Simple_repeat 1 28 0 935 326 84 51 chr6 139747918 139748832 -49530722 + L2 LINE L2 1802 2745 -569 300 207 37 118 chr6 139748964 139749099 -49530455 - MER104 DNA Tc2 -32 148 25 533 295 157 30 chr6 139749187 139749455 -49530099 - LTR16A LTR ERVL -5 445 144 808 343 44 34 chr6 139749661 139750300 -49529254 - HERVL LTR ERVL -318 5336 4692 250 292 62 47 chr6 139750400 139750592 -49528962 - HERVL LTR ERVL -727 4269 4075 749 281 122 46 chr6 139750651 139750979 -49528575 + MLT1G1 LTR MaLR 73 425 -170 318 244 122 0 chr6 139751014 139751096 -49528458 + MLT1G1 LTR MaLR 504 595 0 427 347 48 0 chr6 139751104 139751271 -49528283 - HERV16 LTR ERVL -1385 4379 4205 1359 276 143 38 chr6 139751378 139752981 -49526573 - HERV16 LTR ERVL -1526 3959 2244 199 266 94 31 chr6 139753390 139753454 -49526100 + L2 LINE L2 3201 3268 -4 188 240 20 0 chr6 139753608 139753658 -49525896 + L2 LINE L2 3263 3313 0 348 270 28 117 chr6 139754161 139754487 -49525067 + L1MC4a LINE L1 5636 5932 -1876 25 75 0 0 chr6 139754614 139754667 -49524887 + AT_rich Low_complexity Low_complexity 1 53 0 219 203 0 0 chr6 139755041 139755100 -49524454 + A-rich Low_complexity Low_complexity 1 59 0 1711 189 0 0 chr6 139755642 139755946 -49523608 - AluJo SINE Alu 0 305 2 870 187 41 41 chr6 139756120 139756339 -49523215 + MER20 DNA MER1_type 1 219 0 224 163 23 0 chr6 139756603 139756646 -49522908 + L2 LINE L2 3263 3306 -7 22 56 0 0 chr6 139756653 139756689 -49522865 + AT_rich Low_complexity Low_complexity 1 36 0 395 356 12 6 chr6 139757367 139757527 -49522027 + MIR3 SINE MIR 47 207 -1 297 155 0 0 chr6 139758951 139759009 -49520545 + (CA)n Simple_repeat Simple_repeat 1 58 0 24 0 0 0 chr6 139760653 139760677 -49518877 + AT_rich Low_complexity Low_complexity 1 24 0 510 331 105 27 chr6 139760777 139761148 -49518406 + L3 LINE CR1 1051 1450 -127 185 215 31 77 chr6 139761149 139761214 -49518340 + MIR3 SINE MIR 125 186 -22 1821 173 0 3 chr6 139761216 139761516 -49518038 + AluJb SINE Alu 1 299 -13 308 264 9 38 chr6 139761620 139761726 -49517828 + Charlie7 DNA MER1_type 1 103 -2509 369 0 0 0 chr6 139762627 139762668 -49516886 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr6 139764315 139764344 -49515210 + AT_rich Low_complexity Low_complexity 1 29 0 32 0 0 0 chr6 139764901 139764933 -49514621 + AT_rich Low_complexity Low_complexity 1 32 0 232 229 29 0 chr6 139765061 139765131 -49514423 + (TA)n Simple_repeat Simple_repeat 1 72 0 233 276 55 35 chr6 139765443 139765588 -49513966 - L1MC/D LINE L1 -1913 5895 5748 211 254 16 16 chr6 139766262 139766325 -49513229 + MIR SINE MIR 189 251 -11 248 304 78 29 chr6 139766429 139766531 -49513023 + MIR SINE MIR 24 130 -78 23 0 0 0 chr6 139768478 139768501 -49511053 + AT_rich Low_complexity Low_complexity 1 23 0 412 313 57 43 chr6 139768963 139769193 -49510361 - L1MEd LINE L1 -3783 2346 2114 600 277 72 51 chr6 139769673 139770247 -49509307 - L1MEd LINE L1 -799 1691 1023 23 68 0 0 chr6 139770285 139770329 -49509225 + AT_rich Low_complexity Low_complexity 1 44 0 25 65 0 0 chr6 139771948 139771994 -49507560 + AT_rich Low_complexity Low_complexity 1 46 0 195 42 0 0 chr6 139772458 139772482 -49507072 + (TG)n Simple_repeat Simple_repeat 2 25 0 216 67 0 0 chr6 139773277 139773307 -49506247 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 1707 169 0 18 chr6 139773307 139773579 -49505975 - AluSx SINE Alu -32 280 14 3061 96 2 7 chr6 139773954 139774400 -49505154 - L1P LINE L1 -1276 4870 4427 4206 62 7 0 chr6 139774400 139774946 -49504608 + L1PA7 LINE L1 5600 6154 0 23 0 0 0 chr6 139775276 139775299 -49504255 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 139776276 139776297 -49503257 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 139777121 139777143 -49502411 + AT_rich Low_complexity Low_complexity 1 22 0 432 350 43 30 chr6 139777143 139777377 -49502177 + MIR SINE MIR 15 251 -11 388 296 81 56 chr6 139779318 139779767 -49499787 - L2 LINE L2 -213 3059 2590 886 264 9 0 chr6 139780215 139780435 -49499119 + MER58A DNA MER1_type 3 224 0 22 35 0 0 chr6 139780591 139780620 -49498934 + AT_rich Low_complexity Low_complexity 1 29 0 395 136 0 15 chr6 139783410 139783476 -49496078 - AluJ/FRAM SINE Alu -7 295 231 238 247 25 37 chr6 139783510 139783591 -49495963 - L1MC4 LINE L1 -674 7368 7289 22 0 0 0 chr6 139783968 139783990 -49495564 + AT_rich Low_complexity Low_complexity 1 22 0 665 96 36 27 chr6 139784092 139784313 -49495241 + (TA)n Simple_repeat Simple_repeat 1 223 0 180 0 0 0 chr6 139785211 139785231 -49494323 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 465 152 0 0 chr6 139785342 139785447 -49494107 + (TG)n Simple_repeat Simple_repeat 1 105 0 306 87 0 0 chr6 139785728 139785774 -49493780 + (TG)n Simple_repeat Simple_repeat 1 46 0 337 286 105 64 chr6 139786051 139786222 -49493332 - MIR SINE MIR -44 218 41 541 202 8 16 chr6 139786937 139787186 -49492368 + CT-rich Low_complexity Low_complexity 1 246 0 3626 158 107 128 chr6 139787639 139788077 -49491477 + L1MC3 LINE L1 6137 5750 -594 229 353 29 0 chr6 139788077 139788179 -49491375 + MLT1F1 LTR MaLR 35 139 -428 3626 158 107 128 chr6 139788179 139788745 -49490809 + L1MC3 LINE L1 5749 6326 -18 25 31 0 0 chr6 139789489 139789521 -49490033 + AT_rich Low_complexity Low_complexity 1 32 0 278 96 0 39 chr6 139789903 139789955 -49489599 + (TTA)n Simple_repeat Simple_repeat 1 50 0 677 232 81 47 chr6 139791116 139791327 -49488227 + MER106A DNA MER1_type 1 218 -18 2209 50 57 0 chr6 139792161 139792442 -49487112 + AluY SINE Alu 1 297 -14 40 37 0 0 chr6 139793086 139793140 -49486414 + AT_rich Low_complexity Low_complexity 1 54 0 326 333 0 0 chr6 139794047 139794146 -49485408 + (CATG)n Simple_repeat Simple_repeat 1 99 0 212 331 151 0 chr6 139794224 139794387 -49485167 - MER91A DNA MER1_type 0 190 49 776 203 68 0 chr6 139794452 139794629 -49484925 + MER5A DNA MER1_type 1 189 0 47 53 0 0 chr6 139794790 139794865 -49484689 + AT_rich Low_complexity Low_complexity 1 75 0 194 340 89 39 chr6 139798244 139798447 -49481107 + L2 LINE L2 3097 3309 -4 2055 142 55 3 chr6 139798728 139799073 -49480481 - MER47A DNA MER2_type -3 363 1 189 0 0 0 chr6 139799721 139799742 -49479812 + (T)n Simple_repeat Simple_repeat 1 21 0 180 206 29 0 chr6 139800430 139800464 -49479090 - L2 LINE L2 -30 3242 3208 * 334 283 219 11 chr6 139800435 139800622 -49478932 - MIR SINE MIR -29 233 8 412 318 25 30 chr6 139800768 139800966 -49478588 + L1ME LINE L1 5492 5688 -433 640 271 94 20 chr6 139802210 139802454 -49477100 + MIR SINE MIR 1 262 0 198 0 0 0 chr6 139803029 139803051 -49476503 + (A)n Simple_repeat Simple_repeat 1 22 0 541 280 69 6 chr6 139803183 139803358 -49476196 + LTR16A1 LTR ERVL 265 450 -7 327 297 70 16 chr6 139803472 139803600 -49475954 + L2 LINE L2 3136 3270 -2 207 0 0 0 chr6 139804694 139804717 -49474837 + (TTG)n Simple_repeat Simple_repeat 2 24 0 381 304 155 0 chr6 139804749 139804910 -49474644 - MER5A DNA MER1_type 0 189 4 230 295 54 71 chr6 139805651 139805763 -49473791 - L2 LINE L2 0 3272 3163 244 374 41 0 chr6 139806161 139806305 -49473249 - MIR SINE MIR -57 151 1 216 67 0 0 chr6 139807135 139807165 -49472389 + (A)n Simple_repeat Simple_repeat 1 30 0 760 157 0 8 chr6 139808224 139808236 -49471318 - FLAM_C SINE Alu -179 133 122 198 0 0 0 chr6 139808236 139808258 -49471296 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 760 157 0 8 chr6 139808258 139808379 -49471175 - FLAM_C SINE Alu -190 122 1 189 273 78 26 chr6 139808422 139808499 -49471055 + MIR3 SINE MIR 122 202 -6 1789 156 0 17 chr6 139809678 139809967 -49469587 + AluSx SINE Alu 1 284 -28 249 57 0 0 chr6 139809977 139810012 -49469542 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 533 318 65 14 chr6 139810514 139810728 -49468826 + MIR SINE MIR 32 256 -6 301 356 65 27 chr6 139810845 139811106 -49468448 + L2 LINE L2 2622 2892 -422 1027 147 26 26 chr6 139811234 139811424 -49468130 + AluY SINE Alu 103 292 -19 440 254 46 42 chr6 139812208 139812425 -49467129 - L1M4 LINE L1 -1440 4706 4489 260 304 62 27 chr6 139812956 139813068 -49466486 - L2 LINE L2 -5 3308 3193 378 276 81 17 chr6 139813068 139813242 -49466312 + LTR37B LTR ERV1 6 190 -278 217 306 0 0 chr6 139813403 139813465 -49466089 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 523 200 28 21 chr6 139813494 139813639 -49465915 + LTR37B LTR ERV1 323 468 0 180 77 0 0 chr6 139813962 139813988 -49465566 + (AATTG)n Simple_repeat Simple_repeat 4 29 0 2288 65 0 26 chr6 139815203 139815511 -49464043 + AluY SINE Alu 1 300 -11 331 258 186 8 chr6 139816209 139816333 -49463221 + MER5A DNA MER1_type 43 188 -1 358 328 17 0 chr6 139816407 139816523 -49463031 - L1ME LINE L1 -502 5619 5502 1765 183 0 16 chr6 139817282 139817599 -49461955 + AluJb SINE Alu 1 312 0 2262 53 14 7 chr6 139817647 139817952 -49461602 - AluY SINE Alu 0 307 1 1387 177 143 69 chr6 139817959 139818394 -49461160 - MLT1C LTR MaLR 0 467 1 21 36 0 0 chr6 139819461 139819489 -49460065 + AT_rich Low_complexity Low_complexity 1 28 0 228 260 120 20 chr6 139921902 139922002 -49357552 + L1ME2 LINE L1 5523 5632 -489 393 75 0 0 chr6 139922217 139922270 -49357284 + (TA)n Simple_repeat Simple_repeat 1 53 0 3592 140 0 4 chr6 139922857 139923386 -49356168 - MER1A DNA MER1_type 0 527 1 1038 253 75 49 chr6 139923500 139924407 -49355147 - L1ME3 LINE L1 -211 5934 5006 1472 194 85 9 chr6 139924489 139924808 -49354746 - MER61A LTR ERV1 0 343 1 300 215 149 0 chr6 139924983 139925090 -49354464 - MLT1L LTR MaLR -77 538 416 538 299 51 68 chr6 139925153 139925722 -49353832 - L1ME3 LINE L1 -5557 562 4 2824 118 158 4 chr6 139928286 139928836 -49350718 + LTR24C LTR ERV1 1 635 0 2430 98 0 0 chr6 139929124 139929429 -49350125 + AluSx SINE Alu 1 305 -7 243 0 0 0 chr6 139930168 139930195 -49349359 + (TC)n Simple_repeat Simple_repeat 1 27 0 3489 150 52 14 chr6 139930573 139931221 -49348333 - L1MB5 LINE L1 -17 6157 5485 200 318 73 88 chr6 139931442 139931634 -49347920 + MER5A DNA MER1_type 1 189 0 1163 214 43 55 chr6 139933581 139934105 -49345449 + L1ME2 LINE L1 5651 6334 0 427 300 150 0 chr6 139934116 139934256 -49345298 + L2 LINE L2 1044 1204 -2110 868 141 0 15 chr6 139934256 139934391 -49345163 + FLAM_C SINE Alu 1 133 0 304 244 45 39 chr6 139934474 139934630 -49344924 + L1ME4a LINE L1 5962 6118 -3 2034 111 0 7 chr6 139935523 139935803 -49343751 + AluSc SINE Alu 22 299 -10 237 33 0 0 chr6 139937303 139937333 -49342221 + (TTG)n Simple_repeat Simple_repeat 2 31 0 288 356 42 0 chr6 139937545 139937663 -49341891 + MIR SINE MIR 130 252 -10 * 452 358 108 0 chr6 139937642 139937874 -49341680 - L2 LINE L2 -882 2432 2176 1614 205 0 4 chr6 139940512 139940790 -49338764 + AluJb SINE Alu 5 281 -31 321 26 0 0 chr6 139940793 139940831 -49338723 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1303 117 43 43 chr6 139941007 139941237 -49338317 + MER30 DNA MER1_type 1 230 0 616 219 0 17 chr6 139941457 139941576 -49337978 + FLAM_A SINE Alu 1 117 -25 353 239 190 7 chr6 139941757 139941899 -49337655 + MIR3 SINE MIR 34 201 -7 1478 246 90 27 chr6 139942704 139943180 -49336374 - L2 LINE L2 -356 2958 2453 1506 122 52 0 chr6 139943398 139943505 -49336049 - AluSx SINE Alu -69 243 143 240 35 0 0 chr6 139943505 139943534 -49336020 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1506 122 52 0 chr6 139943534 139943655 -49335899 - AluSx SINE Alu -169 143 3 2654 97 37 0 chr6 139944060 139944410 -49335144 - L1PB1 LINE L1 -3 6205 5843 14540 186 31 14 chr6 139944545 139944993 -49334561 - L1PB1 LINE L1 -366 5842 5403 2354 112 53 34 chr6 139944993 139945350 -49334204 - THE1B LTR MaLR 0 364 1 14540 186 31 14 chr6 139945350 139948549 -49331005 - L1PB1 LINE L1 -805 5403 1977 197 62 0 31 chr6 139948549 139948581 -49330973 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 14540 186 31 14 chr6 139948581 139950586 -49328968 - L1PB1 LINE L1 -4231 1977 8 8769 184 19 20 chr6 139950557 139952197 -49327357 - L1PBa LINE L1 -5223 1640 2 * 208 352 148 0 chr6 139953278 139953406 -49326148 - L2 LINE L2 -3 3269 3123 22 56 0 0 chr6 139954814 139954850 -49324704 + AT_rich Low_complexity Low_complexity 1 36 0 2095 133 0 40 chr6 139955094 139955417 -49324137 + AluSx SINE Alu 1 310 -2 30 0 0 0 chr6 139955470 139955500 -49324054 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr6 139955694 139955730 -49323824 + AT_rich Low_complexity Low_complexity 1 36 0 511 299 7 14 chr6 139955909 139956056 -49323498 - MER5A DNA MER1_type -1 188 43 21 0 0 0 chr6 139956642 139956663 -49322891 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 139958309 139958340 -49321214 + AT_rich Low_complexity Low_complexity 1 31 0 440 301 145 5 chr6 139959610 139959803 -49319751 + MIR SINE MIR 23 242 -20 399 289 47 47 chr6 139960073 139960222 -49319332 + MIR3 SINE MIR 32 180 -28 2097 111 17 7 chr6 139961764 139962061 -49317493 + AluSx SINE Alu 1 300 -12 275 350 92 14 chr6 139964589 139964806 -49314748 - L3b LINE CR1 -246 1337 1104 191 283 76 22 chr6 139965157 139965249 -49314305 - L3 LINE CR1 -843 734 638 793 198 35 117 chr6 139966048 139966220 -49313334 + MER58 DNA MER1_type 30 214 -2206 2183 128 0 3 chr6 139966220 139966533 -49313021 + AluSx SINE Alu 1 312 0 1137 44 11 33 chr6 139966538 139966719 -49312835 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 793 198 35 117 chr6 139966719 139966881 -49312673 + MER58 DNA MER1_type 218 2418 -2 21 36 0 0 chr6 139966892 139966920 -49312634 + AT_rich Low_complexity Low_complexity 1 28 0 2754 119 5 11 chr6 139967548 139967925 -49311629 - THE1C LTR MaLR 0 375 1 1773 145 14 14 chr6 139969334 139969617 -49309937 + AluJo SINE Alu 6 288 -24 2215 173 45 30 chr6 139971215 139971585 -49307969 + Tigger2a DNA MER2_type 1 379 -2329 2291 117 0 0 chr6 139971585 139971894 -49307660 - AluSg1 SINE Alu 0 309 1 2215 173 45 30 chr6 139971894 139971950 -49307604 + Tigger2a DNA MER2_type 379 433 -1 2058 123 0 10 chr6 139972311 139972603 -49306951 + AluSx SINE Alu 1 289 -23 183 102 41 20 chr6 139973120 139973169 -49306385 + (TA)n Simple_repeat Simple_repeat 1 50 0 283 143 0 0 chr6 139973432 139973474 -49306080 + LTR18A LTR ERVL 1 42 -315 2373 150 8 3 chr6 139973474 139973833 -49305721 + HERVL18 LTR ERVL 5687 6047 0 2238 162 53 0 chr6 139973834 139974173 -49305381 + LTR18A LTR ERVL 1 357 0 1174 185 5 14 chr6 139974186 139974408 -49305146 + HERVL18 LTR ERVL 8 227 -5820 * 35042 156 14 21 chr6 139974397 139980043 -49299511 + HERVL18 LTR ERVL 443 6047 0 2437 139 53 0 chr6 139980044 139980383 -49299171 + LTR18A LTR ERVL 1 357 0 393 348 135 8 chr6 139984584 139984851 -49294703 - L2 LINE L2 -584 2730 2430 704 114 145 8 chr6 139985462 139985593 -49293961 + L1MA8 LINE L1 6143 6291 0 11787 129 24 54 chr6 139985877 139988016 -49291538 + L1PA7 LINE L1 8 2149 -4312 2316 108 0 3 chr6 139988016 139988330 -49291224 + AluSq SINE Alu 1 313 0 11787 129 24 54 chr6 139988330 139988928 -49290626 + L1PA7 LINE L1 2149 2764 -3697 12212 83 0 0 chr6 139988928 139991277 -49288277 + L1PA7 LINE L1 4115 6467 -2 261 331 60 37 chr6 139991451 139991801 -49287753 + HAL1b LINE L1 72 429 -919 278 270 137 33 chr6 139991982 139992289 -49287265 + HAL1b LINE L1 478 816 -532 291 226 46 154 chr6 139992377 139992572 -49286982 + L1MC4a LINE L1 6414 6587 -1221 242 338 74 14 chr6 139992587 139992735 -49286819 + L1MC5 LINE L1 6674 6830 -1131 * 960 236 160 25 chr6 139992728 139993160 -49286394 + L1MC5 LINE L1 7037 7526 -435 364 242 49 48 chr6 139993255 139993457 -49286097 + L1ME3 LINE L1 5965 6170 0 7578 13 0 0 chr6 139994517 139995447 -49284107 + L1HS LINE L1 5226 6155 0 227 54 27 0 chr6 139995449 139995486 -49284068 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 863 194 122 0 chr6 139996169 139996349 -49283205 - MIR SINE MIR -21 241 40 549 252 170 4 chr6 139996465 139996695 -49282859 + MLT1C LTR MaLR 59 326 -141 379 335 57 19 chr6 139997205 139997284 -49282270 - MIR SINE MIR -32 230 155 882 258 46 21 chr6 139997284 139997613 -49281941 - MER46C DNA MER2_type -1 337 1 379 335 57 19 chr6 139997613 139997742 -49281812 - MIR SINE MIR -107 155 14 285 228 106 56 chr6 139998322 139998509 -49281045 - MIR3 SINE MIR -20 242 20 437 311 82 38 chr6 139999409 139999676 -49279878 - L3 LINE CR1 -2 1575 1297 523 385 18 14 chr6 140000649 140000924 -49278630 - L3 LINE CR1 -467 1110 835 829 197 48 57 chr6 140001322 140001562 -49277992 + MIR SINE MIR 11 249 -13 194 194 0 0 chr6 140001562 140001598 -49277956 + MIR SINE MIR 223 258 -4 328 246 0 0 chr6 140002011 140002072 -49277482 - MER2 DNA MER2_type -1 344 284 1036 160 55 5 chr6 140002100 140002300 -49277254 - MER2 DNA MER2_type -135 210 1 435 150 12 0 chr6 140003485 140003565 -49275989 - LTR5 LTR ERVK -885 84 4 747 107 113 20 chr6 140004058 140004208 -49275346 + L1PA16 LINE L1 6002 6165 -1 316 105 0 53 chr6 140004221 140004278 -49275276 + MSTB LTR MaLR 373 426 0 1552 215 42 3 chr6 140004279 140004661 -49274893 + MER110 LTR ERV1 95 491 0 22 0 0 0 chr6 140004845 140004867 -49274687 + AT_rich Low_complexity Low_complexity 1 22 0 2167 100 14 0 chr6 140005055 140005345 -49274209 + AluSx SINE Alu 1 294 -18 233 347 77 29 chr6 140005718 140005888 -49273666 + L2 LINE L2 2866 3043 -229 198 0 0 0 chr6 140007395 140007417 -49272137 + (CA)n Simple_repeat Simple_repeat 2 23 0 225 0 0 0 chr6 140007435 140007460 -49272094 + (CA)n Simple_repeat Simple_repeat 1 25 0 746 188 0 6 chr6 140007967 140008148 -49271406 + CT-rich Low_complexity Low_complexity 1 180 0 481 62 0 0 chr6 140008271 140008335 -49271219 + MER72 LTR ERV1 659 722 0 1598 271 202 16 chr6 140008338 140009031 -49270523 - L2 LINE L2 -1106 2208 1387 805 251 90 46 chr6 140009031 140009397 -49270157 - MLT1I LTR MaLR -10 399 18 207 227 0 45 chr6 140009398 140009424 -49270130 - L2 LINE L2 -1954 1360 1334 1776 128 209 14 chr6 140009424 140009782 -49269772 + MSTA LTR MaLR 1 428 0 207 227 0 45 chr6 140009782 140009821 -49269733 - L2 LINE L2 -1980 1334 1298 730 141 134 27 chr6 140009956 140010105 -49269449 + FRAM SINE Alu 1 164 -12 354 258 31 74 chr6 140010766 140010929 -49268625 + MLT1D LTR MaLR 7 162 -343 249 114 0 0 chr6 140011038 140011073 -49268481 + Alu SINE Alu 253 287 -14 2005 103 36 7 chr6 140011141 140011422 -49268132 - AluSc SINE Alu -20 289 1 745 180 0 0 chr6 140012975 140013097 -49266457 - FLAM_C SINE Alu -21 122 1 23 33 0 0 chr6 140013128 140013158 -49266396 + AT_rich Low_complexity Low_complexity 1 30 0 193 367 0 17 chr6 140013243 140013303 -49266251 - MIR SINE MIR -61 147 89 384 349 47 0 chr6 140013968 140014140 -49265414 - MIR SINE MIR -81 181 2 180 125 0 0 chr6 140014311 140014343 -49265211 + (CA)n Simple_repeat Simple_repeat 2 33 0 283 309 3 6 chr6 140014343 140014447 -49265107 - MIR SINE MIR -90 118 16 252 0 0 0 chr6 140014471 140014499 -49265055 + (A)n Simple_repeat Simple_repeat 1 28 0 2057 136 10 0 chr6 140014573 140014867 -49264687 + AluSx SINE Alu 1 297 -15 259 244 103 0 chr6 140015289 140015367 -49264187 + MIR3 SINE MIR 91 176 -32 203 276 115 35 chr6 140016461 140016548 -49263006 - L3 LINE CR1 -146 1431 1338 250 357 20 20 chr6 140016585 140016683 -49262871 - L2 LINE L2 -20 3252 3155 257 234 0 117 chr6 140016889 140017000 -49262554 - L3 LINE CR1 -283 1294 1197 198 167 0 0 chr6 140017376 140017412 -49262142 + GA-rich Low_complexity Low_complexity 2 37 0 23 0 0 0 chr6 140017825 140017848 -49261706 + AT_rich Low_complexity Low_complexity 1 23 0 434 209 0 35 chr6 140018846 140018932 -49260622 + AluJb SINE Alu 35 117 -195 1713 99 0 5 chr6 140019034 140019256 -49260298 - AluSq SINE Alu -8 305 85 2192 95 0 17 chr6 140019569 140019863 -49259691 - AluSc SINE Alu -20 289 1 379 267 30 38 chr6 140020018 140020149 -49259405 + L1ME4a LINE L1 5766 5895 -226 25 0 0 0 chr6 140020321 140020346 -49259208 + AT_rich Low_complexity Low_complexity 1 25 0 19127 19 0 0 chr6 140020372 140023501 -49256053 + L1HS LINE L1 3027 6155 0 35 0 0 0 chr6 140023982 140024017 -49255537 + AT_rich Low_complexity Low_complexity 1 35 0 837 185 53 0 chr6 140024020 140024171 -49255383 - FRAM SINE Alu -7 159 1 200 200 0 25 chr6 140024298 140024338 -49255216 + MIR SINE MIR 7 45 -217 492 345 44 5 chr6 140024488 140024691 -49254863 + MER115 DNA AcHobo 155 365 -328 1707 172 32 0 chr6 140025786 140026071 -49253483 - AluJo SINE Alu -18 294 1 280 296 227 6 chr6 140026226 140026402 -49253152 - L3b LINE CR1 -259 1324 1110 27 0 0 0 chr6 140026577 140026604 -49252950 + AT_rich Low_complexity Low_complexity 1 27 0 469 310 61 61 chr6 140027149 140027378 -49252176 + MIR SINE MIR 34 262 0 1820 196 0 0 chr6 140027497 140027808 -49251746 + AluJb SINE Alu 1 311 -1 872 279 36 16 chr6 140028510 140028761 -49250793 + MIR SINE MIR 7 262 0 21 36 0 0 chr6 140029112 140029140 -49250414 + AT_rich Low_complexity Low_complexity 1 28 0 682 274 29 67 chr6 140029150 140029464 -49250090 + MLT1J2 LTR MaLR 119 420 -30 1411 244 49 40 chr6 140030574 140031020 -49248534 + MLT1J2 LTR MaLR 1 450 0 1739 247 117 31 chr6 140031041 140031589 -49247965 - L2 LINE L2 -227 3086 2467 375 23 0 0 chr6 140031589 140031633 -49247921 + (CA)n Simple_repeat Simple_repeat 2 45 0 1739 247 117 31 chr6 140031633 140031790 -49247764 - L2 LINE L2 -846 2467 2325 637 297 66 66 chr6 140031847 140032167 -49247387 + L2 LINE L2 2944 3263 -9 219 114 0 0 chr6 140032169 140032204 -49247350 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 1039 163 0 12 chr6 140032354 140032520 -49247034 - FRAM SINE Alu -15 161 1 2360 235 71 71 chr6 140032805 140033076 -49246478 - L1MC5 LINE L1 -70 7891 7621 342 0 0 0 chr6 140033076 140033114 -49246440 + (TG)n Simple_repeat Simple_repeat 2 39 0 2360 235 71 71 chr6 140033114 140034082 -49245472 - L1MC5 LINE L1 -339 7622 6652 5230 167 17 17 chr6 140034248 140035470 -49244084 - L1MB1 LINE L1 -1 6167 4763 2601 58 0 0 chr6 140035470 140035781 -49243773 - AluY SINE Alu 0 311 1 5230 167 17 17 chr6 140035781 140036588 -49242966 - L1MB1 LINE L1 -1405 4763 3958 212 259 25 49 chr6 140036640 140036802 -49242752 + T-rich Low_complexity Low_complexity 3 160 0 23 0 0 0 chr6 140037912 140037935 -49241619 + AT_rich Low_complexity Low_complexity 1 23 0 243 189 0 0 chr6 140038572 140038625 -49240929 + GA-rich Low_complexity Low_complexity 4 56 0 2318 75 3 10 chr6 140038938 140039230 -49240324 + AluSc SINE Alu 1 290 -19 284 345 55 9 chr6 140039969 140040079 -49239475 + L2 LINE L2 3136 3250 -22 387 295 55 33 chr6 140040323 140040506 -49239048 + L1ME LINE L1 5612 5798 -323 970 231 94 22 chr6 140040557 140040877 -49238677 + MER2 DNA MER2_type 1 343 -1 310 280 27 27 chr6 140041152 140041302 -49238252 - MARNA DNA Mariner -282 304 155 1506 181 74 93 chr6 140042896 140043371 -49236183 + MLT1C LTR MaLR 1 466 -1 2151 135 0 0 chr6 140043757 140044060 -49235494 - AluSx SINE Alu -9 303 1 1832 166 0 7 chr6 140044290 140044579 -49234975 + AluSx SINE Alu 7 293 -19 991 320 79 66 chr6 140044825 140045667 -49233887 + L2 LINE L2 2232 3077 -195 1446 289 89 20 chr6 140045691 140046660 -49232894 - L2 LINE L2 -2 3311 2186 397 327 26 0 chr6 140046865 140047018 -49232536 - L2 LINE L2 -1144 2170 2014 24 32 0 0 chr6 140048877 140048908 -49230646 + AT_rich Low_complexity Low_complexity 1 31 0 528 285 133 0 chr6 140049066 140049217 -49230337 + MER91B DNA MER1_type 17 187 -3 685 222 6 40 chr6 140049356 140049532 -49230022 + MER63A DNA MER1_type 41 210 0 489 250 47 14 chr6 140049736 140049884 -49229670 - MIR SINE MIR -108 154 2 252 211 0 0 chr6 140049966 140050018 -49229536 - MLT2C1 LTR ERVL 0 663 612 40 59 0 0 chr6 140050027 140050095 -49229459 + AT_rich Low_complexity Low_complexity 1 68 0 1129 198 42 50 chr6 140050095 140050440 -49229114 - MLT2C1 LTR ERVL -38 426 14 2041 184 31 20 chr6 140050444 140050900 -49228654 + MLT1C LTR MaLR 6 466 -1 342 340 0 31 chr6 140051510 140051672 -49227882 - MARNA DNA Mariner -367 219 63 310 211 16 178 chr6 140051894 140052079 -49227475 - MIR SINE MIR -92 170 16 550 193 0 83 chr6 140053965 140054110 -49225444 - FLAM_A SINE Alu 0 133 1 936 215 12 13 chr6 140054171 140054404 -49225150 - MSTD LTR MaLR 0 396 193 363 100 43 0 chr6 140054404 140054474 -49225080 + GA-rich Low_complexity Low_complexity 2 74 0 702 205 5 5 chr6 140054506 140054657 -49224897 - MSTC LTR MaLR -243 153 3 359 307 179 0 chr6 140054762 140054974 -49224580 - MLT1J LTR MaLR -261 250 1 259 351 61 44 chr6 140055054 140055168 -49224386 - L2 LINE L2 -47 3225 3110 296 338 96 36 chr6 140055225 140055696 -49223858 - L2 LINE L2 -1264 2050 1552 1280 293 51 110 chr6 140056793 140058018 -49221536 - L2 LINE L2 0 3313 2193 2314 110 0 0 chr6 140058018 140058318 -49221236 + AluSx SINE Alu 8 307 -5 1280 293 51 110 chr6 140058318 140058765 -49220789 - L2 LINE L2 -1120 2193 1721 237 198 33 11 chr6 140060178 140060269 -49219285 + CT-rich Low_complexity Low_complexity 1 93 0 2593 195 35 47 chr6 140060308 140060969 -49218585 - L1MB8 LINE L1 -84 6094 5442 2093 109 7 0 chr6 140061175 140061458 -49218096 + AluSx SINE Alu 13 297 -15 428 250 0 7 chr6 140061513 140061653 -49217901 + GA-rich Low_complexity Low_complexity 3 141 0 21 36 0 0 chr6 140062378 140062406 -49217148 + AT_rich Low_complexity Low_complexity 1 28 0 234 320 97 0 chr6 140066562 140066665 -49212889 + L2 LINE L2 3180 3292 -21 971 143 17 0 chr6 140067177 140067352 -49212202 + L1MA9 LINE L1 5845 6022 -290 1710 159 66 36 chr6 140067753 140068117 -49211437 + THE1C LTR MaLR 1 375 0 232 308 0 44 chr6 140068645 140068736 -49210818 - MIR SINE MIR -92 116 30 703 177 23 8 chr6 140068832 140068962 -49210592 + AluJo SINE Alu 1 132 -180 795 206 0 0 chr6 140069251 140069397 -49210157 + AluJo SINE Alu 137 282 -30 378 0 0 0 chr6 140069397 140069439 -49210115 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 208 343 27 0 chr6 140069593 140069666 -49209888 + L2 LINE L2 3189 3263 -9 244 325 14 14 chr6 140069835 140069964 -49209590 - MIR SINE MIR -31 177 48 22 35 0 0 chr6 140071561 140071590 -49207964 + AT_rich Low_complexity Low_complexity 1 29 0 21 100 0 0 chr6 140071846 140071916 -49207638 + AT_rich Low_complexity Low_complexity 1 70 0 5209 18 0 2 chr6 140073328 140073956 -49205598 - L1HS LINE L1 -3 6152 5526 561 211 0 0 chr6 140074001 140074134 -49205420 + L1MA4 LINE L1 6163 6295 -5 234 336 56 0 chr6 140074748 140074855 -49204699 - MIR SINE MIR 0 262 150 252 256 116 0 chr6 140074855 140074984 -49204570 + MER104 DNA Tc2 1 144 -36 267 198 123 88 chr6 140075016 140075120 -49204434 - MIR SINE MIR -56 152 31 324 305 130 43 chr6 140076644 140076871 -49202683 - MIR SINE MIR -1 261 18 633 304 9 5 chr6 140077145 140077359 -49202195 + MER20 DNA MER1_type 1 215 -4 308 260 221 0 chr6 140079868 140079972 -49199582 + FLAM_A SINE Alu 6 132 -1 443 197 7 27 chr6 140080291 140080438 -49199116 + CT-rich Low_complexity Low_complexity 3 146 0 328 304 24 32 chr6 140080605 140080730 -49198824 - L1MC/D LINE L1 -2109 5699 5576 805 173 0 0 chr6 140082311 140082438 -49197116 + FLAM_C SINE Alu 1 127 -16 290 265 24 12 chr6 140084400 140084483 -49195071 + GA-rich Low_complexity Low_complexity 2 85 0 540 199 22 52 chr6 140084942 140085078 -49194476 - L2 LINE L2 0 3313 3182 1557 240 55 50 chr6 140086452 140087009 -49192545 - MLT1F1 LTR MaLR 0 567 7 444 280 220 0 chr6 140087297 140087479 -49192075 + MIR SINE MIR 36 257 -5 21 0 0 0 chr6 140087758 140087779 -49191775 + AT_rich Low_complexity Low_complexity 1 21 0 364 268 30 61 chr6 140088034 140088198 -49191356 - HAL1b LINE L1 -1 1347 1189 761 181 0 0 chr6 140088215 140088342 -49191212 + FLAM_C SINE Alu 6 132 -11 207 264 0 46 chr6 140088473 140088560 -49190994 + GA-rich Low_complexity Low_complexity 4 86 0 2792 246 36 52 chr6 140089330 140090395 -49189159 - L1MEc LINE L1 -2770 3445 2450 3144 143 32 17 chr6 140090395 140090983 -49188571 - L1MA8 LINE L1 -4 6287 5691 2792 246 36 52 chr6 140090983 140091326 -49188228 - L1MEc LINE L1 -3765 2450 2103 7005 58 5 0 chr6 140091370 140092298 -49187256 - L1PA7 LINE L1 -6 6148 5216 502 268 24 37 chr6 140092844 140093008 -49186546 + MER5B DNA MER1_type 1 162 -16 339 44 0 0 chr6 140094161 140094206 -49185348 + (TG)n Simple_repeat Simple_repeat 2 46 0 306 67 0 0 chr6 140096593 140096638 -49182916 + (CA)n Simple_repeat Simple_repeat 2 46 0 304 287 36 48 chr6 140097379 140097546 -49182008 - LTR67 LTR ERVL -8 549 385 333 294 121 48 chr6 140097830 140098078 -49181476 - L2 LINE L2 -768 2546 2281 239 305 114 80 chr6 140098255 140098606 -49180948 - L2 LINE L2 -1254 2060 1698 1324 178 7 82 chr6 140098611 140098914 -49180640 - AluSx SINE Alu 0 312 33 1069 217 48 56 chr6 140099278 140099724 -49179830 - MER39 LTR ERV1 -5 702 67 2168 131 16 43 chr6 140100659 140101033 -49178521 + THE1B LTR MaLR 1 364 0 21 71 0 0 chr6 140101044 140101086 -49178468 + AT_rich Low_complexity Low_complexity 1 42 0 23 54 0 0 chr6 140101420 140101457 -49178097 + AT_rich Low_complexity Low_complexity 1 37 0 259 216 27 27 chr6 140102315 140102389 -49177165 + MER112 DNA MER1_type 156 229 -31 17146 71 2 0 chr6 140104484 140106861 -49172693 + L1P LINE L1 767 3146 -3000 428 325 172 6 chr6 140106961 140107221 -49172333 - L3 LINE CR1 -903 674 346 1938 144 77 6 chr6 140107221 140107561 -49171993 + THE1B LTR MaLR 1 364 0 428 325 172 6 chr6 140107561 140107632 -49171922 - L3 LINE CR1 -1231 346 288 26 50 0 0 chr6 140107740 140107780 -49171774 + AT_rich Low_complexity Low_complexity 1 40 0 220 379 32 8 chr6 140107993 140108117 -49171437 + L2 LINE L2 3125 3251 -21 2345 67 40 0 chr6 140108209 140108508 -49171046 + AluY SINE Alu 1 311 0 361 329 68 19 chr6 140108999 140109160 -49170394 + MIR SINE MIR 16 184 -78 2451 288 93 12 chr6 140109449 140110511 -49169043 - L2 LINE L2 -1 3312 2138 574 93 0 0 chr6 140111396 140111482 -49168072 - L1P LINE L1 -1035 5111 5026 * 603 156 52 0 chr6 140111479 140111614 -49167940 - L1P LINE L1 -2910 3236 3095 519 262 24 12 chr6 140111609 140111773 -49167781 - L1MEc LINE L1 -4310 2086 1921 * 434 67 34 11 chr6 140111775 140111864 -49167690 + (TTTA)n Simple_repeat Simple_repeat 2 92 0 6076 84 19 64 chr6 140111864 140113265 -49166289 - SVA Other Other -554 1368 433 24 53 0 0 chr6 140113277 140113315 -49166239 + GC_rich Low_complexity Low_complexity 1 38 0 263 317 117 52 chr6 140113517 140113747 -49165807 + L3 LINE CR1 1014 1258 -319 1494 248 37 21 chr6 140113771 140114207 -49165347 + LTR47B LTR ERVL 1 443 0 343 236 0 0 chr6 140114376 140114448 -49165106 + LTR40a LTR ERVL 1 72 -447 376 243 132 48 chr6 140114459 140114648 -49164906 - MER74B LTR ERVL -27 595 391 279 176 15 15 chr6 140114847 140114915 -49164639 - MER74B LTR ERVL -517 105 38 * 1592 250 52 14 chr6 140114896 140115336 -49164218 + LTR40a LTR ERVL 63 519 0 482 191 40 26 chr6 140117079 140117231 -49162323 + L1MDa LINE L1 1405 1558 -4982 186 43 0 0 chr6 140117247 140117270 -49162284 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 591 211 18 0 chr6 140117284 140117393 -49162161 + FLAM_A SINE Alu 11 121 -21 1203 258 108 36 chr6 140117403 140118328 -49161226 + L1MCa LINE L1 1268 2470 -3956 2439 97 0 0 chr6 140118328 140118637 -49160917 - AluSq SINE Alu -4 309 1 1203 258 108 36 chr6 140118637 140119072 -49160482 + L1MCa LINE L1 2470 2872 -3554 1888 209 112 33 chr6 140119077 140119691 -49159863 + L1MD2 LINE L1 5680 6342 -17 311 185 74 0 chr6 140119693 140119774 -49159780 + MER3 DNA MER1_type 123 209 0 232 208 0 0 chr6 140119731 140119779 -49159775 - MER3 DNA MER1_type -119 90 43 * 537 262 47 17 chr6 140120693 140120865 -49158689 - MER97c DNA MER1_type? -911 179 3 254 385 55 0 chr6 140120925 140121034 -49158520 + L2 LINE L2 3158 3272 0 1465 201 95 40 chr6 140121354 140121777 -49157777 - LTR16A1 LTR ERVL 0 457 12 278 132 15 73 chr6 140122094 140122162 -49157392 - THE1B LTR MaLR 0 364 301 373 322 13 60 chr6 140122388 140122537 -49157017 - MER5B DNA MER1_type -32 157 3 2435 58 3 0 chr6 140122873 140123167 -49156387 + AluY SINE Alu 3 297 -14 189 0 0 0 chr6 140123866 140123887 -49155667 + (TTTAA)n Simple_repeat Simple_repeat 3 23 0 1418 265 134 28 chr6 140124097 140124633 -49154921 + MLT1E LTR MaLR 1 593 0 601 258 40 27 chr6 140124664 140124889 -49154665 - L1ME3A LINE L1 -21 6218 5991 2270 102 0 3 chr6 140124889 140125192 -49154362 - AluSx SINE Alu -10 302 1 1268 232 69 46 chr6 140125198 140125702 -49153852 - L1ME3A LINE L1 -299 5940 5425 312 295 15 96 chr6 140125835 140125902 -49153652 - L1ME3A LINE L1 -1209 5006 4935 1731 200 8 101 chr6 140125902 140126417 -49153137 - MLT1C LTR MaLR 0 467 1 312 295 15 96 chr6 140126417 140126620 -49152934 - L1ME3A LINE L1 -1280 4935 4758 * 357 291 65 58 chr6 140126607 140127159 -49152395 - L1MCa LINE L1 -4777 1619 1072 180 0 0 0 chr6 140127159 140127179 -49152375 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2039 137 11 0 chr6 140127182 140127467 -49152087 - AluSx SINE Alu -24 288 1 357 291 65 58 chr6 140127467 140127515 -49152039 - L1MCa LINE L1 -5325 1071 1011 700 244 41 15 chr6 140127525 140127722 -49151832 - MIR SINE MIR -31 231 30 699 264 101 4 chr6 140127777 140128004 -49151550 - MIR SINE MIR 0 262 14 405 0 0 0 chr6 140128607 140128652 -49150902 + (CA)n Simple_repeat Simple_repeat 2 46 0 458 260 64 44 chr6 140129169 140129373 -49150181 + L2 LINE L2 3102 3309 -4 4548 187 77 8 chr6 140129659 140129997 -49149557 + L1MC3 LINE L1 6503 6816 -969 2410 87 60 0 chr6 140129997 140130331 -49149223 - THE1A LTR MaLR -1 354 1 4548 187 77 8 chr6 140130331 140131069 -49148485 + L1MC3 LINE L1 6816 7653 -132 2060 130 72 20 chr6 140131074 140131420 -49148134 - THE1B LTR MaLR 0 364 1 9890 98 4 1 chr6 140131539 140132931 -49146623 - THE1B-int LTR MaLR -184 1396 1 2144 131 73 14 chr6 140132931 140133275 -49146279 - THE1B LTR MaLR 0 364 1 425 170 71 9 chr6 140133284 140133396 -49146158 + L1MC3 LINE L1 7666 7784 -1 268 278 14 0 chr6 140133980 140134052 -49145502 - L2 LINE L2 -78 3235 3163 7395 166 38 24 chr6 140134091 140134700 -49144854 + L1MCa LINE L1 10 609 -5817 180 0 0 0 chr6 140134700 140134720 -49144834 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7395 166 38 24 chr6 140134720 140135429 -49144125 + L1MCa LINE L1 609 1356 -5070 962 223 23 104 chr6 140135429 140135824 -49143730 + MLT1A1 LTR MaLR 1 363 -2 7395 166 38 24 chr6 140135824 140136072 -49143482 + L1MCa LINE L1 1356 1599 -4827 579 316 133 50 chr6 140136392 140137111 -49142443 - L2 LINE L2 -816 2498 1701 2018 113 6 75 chr6 140137111 140137446 -49142108 - AluSx SINE Alu 0 312 1 579 316 133 50 chr6 140137446 140137545 -49142009 - L2 LINE L2 -1613 1701 1612 845 196 58 0 chr6 140137576 140137749 -49141805 + MLT1D LTR MaLR 1 183 -322 764 203 13 0 chr6 140137764 140137922 -49141632 + MLT1D LTR MaLR 346 505 0 222 273 18 0 chr6 140138148 140138203 -49141351 - L2 LINE L2 -1892 1422 1367 258 56 0 0 chr6 140138274 140138310 -49141244 + (TTG)n Simple_repeat Simple_repeat 2 37 0 686 130 0 0 chr6 140138312 140138412 -49141142 - AluSg/x SINE Alu -18 294 195 805 275 109 54 chr6 140138944 140139071 -49140483 + MLT1L LTR MaLR 31 150 -465 894 246 11 0 chr6 140139071 140139258 -49140296 - MER5A DNA MER1_type 0 189 1 805 275 109 54 chr6 140139258 140139664 -49139890 + MLT1L LTR MaLR 150 593 -22 559 313 79 51 chr6 140139783 140140138 -49139416 + L1ME4a LINE L1 5556 5920 -201 1262 138 0 0 chr6 140140152 140140340 -49139214 + AluSg/x SINE Alu 120 307 -3 187 270 200 26 chr6 140140555 140140670 -49138884 - L2 LINE L2 -2450 864 730 339 336 35 0 chr6 140141450 140141566 -49137988 - L2 LINE L2 -19 3253 3134 542 319 127 26 chr6 140141604 140142178 -49137376 + L2 LINE L2 1563 2194 -1120 3678 151 44 9 chr6 140142216 140142903 -49136651 + MER50 LTR ERV1 1 711 -23 302 305 0 32 chr6 140142903 140142998 -49136556 + L2 LINE L2 2230 2321 -993 376 276 19 67 chr6 140143107 140143212 -49136342 + L2 LINE L2 3137 3236 -36 2049 121 5 102 chr6 140143215 140143654 -49135900 + MER57A LTR ERV1 8 403 0 928 190 101 21 chr6 140143792 140144029 -49135525 - MER5C DNA MER1_type -68 256 1 1959 186 48 2 chr6 140144115 140144529 -49135025 - MER34C LTR ERV1 0 585 153 1613 158 130 35 chr6 140144652 140145107 -49134447 + L1MC/D LINE L1 1751 2248 -4178 1855 226 12 40 chr6 140145115 140145686 -49133868 + L1MC/D LINE L1 4938 5492 -934 267 167 83 0 chr6 140145725 140145785 -49133769 - MSTD LTR MaLR -2 394 330 1293 174 69 25 chr6 140145827 140146072 -49133482 + L1MC/D LINE L1 5500 5768 -844 2648 118 38 12 chr6 140146072 140146489 -49133065 + MSTA LTR MaLR 1 428 0 1293 174 69 25 chr6 140146489 140146594 -49132960 + L1MC/D LINE L1 5768 5867 -745 2697 73 6 14 chr6 140146594 140146950 -49132604 + THE1A LTR MaLR 1 353 -2 9506 92 99 0 chr6 140146952 140148390 -49131164 + THE1A-int LTR MaLR 1 1580 0 2563 97 11 0 chr6 140148390 140148739 -49130815 + THE1A LTR MaLR 1 353 -2 1264 141 5 0 chr6 140148748 140148954 -49130600 + L1MC/D LINE L1 5880 6086 -527 679 364 8 8 chr6 140149106 140149356 -49130198 - MIR SINE MIR 0 262 13 368 312 124 9 chr6 140149377 140149595 -49129959 + L3 LINE CR1 1171 1413 -164 188 81 189 0 chr6 140149664 140149701 -49129853 + L3b LINE CR1 1530 1573 -10 2242 105 0 10 chr6 140150279 140150583 -49128971 - AluY SINE Alu -10 301 1 340 277 62 66 chr6 140151445 140151701 -49127853 - MLT1K LTR MaLR -169 419 165 6985 176 99 25 chr6 140151937 140153420 -49126134 - MER52A LTR ERV1 0 1755 83 2131 94 37 3 chr6 140153619 140153918 -49125636 + AluSg1 SINE Alu 1 309 0 1926 74 0 12 chr6 140153951 140154208 -49125346 + L1PA6 LINE L1 5901 6154 0 236 235 165 43 chr6 140154352 140154467 -49125087 - MIR SINE MIR -126 136 8 453 281 24 37 chr6 140154950 140155114 -49124440 + MER5B DNA MER1_type 1 162 -16 503 226 0 0 chr6 140155690 140155783 -49123771 + AluSg1 SINE Alu 1 93 -216 581 202 0 24 chr6 140155884 140156008 -49123546 + AluSp/q SINE Alu 154 274 -39 774 138 158 7 chr6 140156742 140156894 -49122660 + MER1B DNA MER1_type 1 175 -122 818 191 36 0 chr6 140156962 140157130 -49122424 + MER1B DNA MER1_type 166 339 0 605 191 34 41 chr6 140157649 140157796 -49121758 + MSTD LTR MaLR 251 396 0 550 277 62 53 chr6 140158222 140158477 -49121077 + MIR SINE MIR 1 252 -10 189 0 0 0 chr6 140158816 140158837 -49120717 + (T)n Simple_repeat Simple_repeat 1 21 0 192 152 0 0 chr6 140158967 140159000 -49120554 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 329 272 190 0 chr6 140163503 140163661 -49115893 - L2 LINE L2 -5 3308 3121 221 238 105 48 chr6 140163785 140163890 -49115664 + L2 LINE L2 3144 3254 -18 189 107 0 0 chr6 140164018 140164046 -49115508 + (TG)n Simple_repeat Simple_repeat 1 28 0 284 288 174 27 chr6 140164484 140164668 -49114886 + L2 LINE L2 3093 3303 -10 714 189 0 0 chr6 140164805 140164927 -49114627 - Tigger3(Golem) DNA MER2_type -1 3028 2907 245 71 71 0 chr6 140165079 140165121 -49114433 + GA-rich Low_complexity Low_complexity 5 49 0 654 169 127 42 chr6 140165122 140165311 -49114243 - THE1C LTR MaLR -170 205 1 1105 322 75 16 chr6 140165338 140166131 -49113423 - HERV16 LTR ERVL -2827 2175 1277 347 167 0 56 chr6 140166154 140166226 -49113328 - LTR16A1 LTR ERVL -332 125 58 231 274 0 0 chr6 140166407 140166469 -49113085 + L2 LINE L2 3242 3303 -10 1795 175 22 27 chr6 140166764 140167129 -49112425 - MLT1A1 LTR MaLR -2 363 1 557 245 205 70 chr6 140167662 140168062 -49111492 - L1ME4a LINE L1 -3 6118 5665 319 257 35 118 chr6 140168078 140168222 -49111332 - L2 LINE L2 0 3313 3182 1283 186 103 53 chr6 140168282 140168642 -49110912 - MLT1B LTR MaLR 0 390 13 2110 215 7 9 chr6 140168668 140169114 -49110440 - MLT1B-int LTR MaLR -28 1707 1263 1739 210 60 3 chr6 140169229 140169672 -49109882 - MLT1B-int LTR MaLR -764 607 6 1120 218 25 81 chr6 140169676 140170070 -49109484 - MLT1A2 LTR MaLR 0 374 3 387 206 22 0 chr6 140170181 140170273 -49109281 + MER53 DNA DNA 1 94 -95 * 457 149 0 0 chr6 140170199 140170286 -49109268 - MER53 DNA DNA -10 179 93 298 294 54 0 chr6 140171725 140171817 -49107737 + L2 LINE L2 3184 3280 -33 25 51 0 0 chr6 140172582 140172621 -49106933 + AT_rich Low_complexity Low_complexity 1 39 0 284 260 293 8 chr6 140172838 140172961 -49106593 - MER5B DNA MER1_type -17 161 4 244 250 0 0 chr6 140172993 140173049 -49106505 + A-rich Low_complexity Low_complexity 1 56 0 609 271 68 0 chr6 140174027 140174219 -49105335 + MIR SINE MIR 21 225 -37 508 213 24 0 chr6 140174545 140174672 -49104882 - L1MC1 LINE L1 -5 6328 6199 297 89 0 0 chr6 140175266 140175311 -49104243 + (TA)n Simple_repeat Simple_repeat 1 45 0 * 306 0 0 0 chr6 140175310 140175344 -49104210 + (GA)n Simple_repeat Simple_repeat 2 35 0 14303 121 49 12 chr6 140175723 140177844 -49101710 + Tigger1 DNA MER2_type 1 2040 -378 189 0 0 0 chr6 140177844 140177865 -49101689 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1786 152 4 0 chr6 140177874 140178144 -49101410 - AluSx SINE Alu -39 273 3 14303 121 49 12 chr6 140178144 140178338 -49101216 + Tigger1 DNA MER2_type 2047 2414 -4 612 201 61 9 chr6 140178789 140178971 -49100583 + L1MC4 LINE L1 6416 6606 -1189 1755 186 17 22 chr6 140178991 140179351 -49100203 - MLT1A1 LTR MaLR -7 358 1 2813 234 107 24 chr6 140179371 140179519 -49100035 + L1MC4 LINE L1 6937 7071 -971 246 32 0 0 chr6 140179519 140179550 -49100004 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 2813 234 107 24 chr6 140179550 140180421 -49099133 + L1MC4 LINE L1 7071 8041 -1 830 200 71 6 chr6 140181083 140181253 -49098301 + MER5A DNA MER1_type 9 189 0 544 283 55 33 chr6 140183015 140183265 -49096289 - MIR SINE MIR -1 261 5 332 327 10 10 chr6 140183743 140183844 -49095710 + MIR SINE MIR 30 130 -78 2065 128 3 10 chr6 140185985 140186290 -49093264 - AluSx SINE Alu -9 303 1 217 314 22 80 chr6 140186840 140186977 -49092577 + MIR SINE MIR 1 129 -133 983 181 106 13 chr6 140187053 140187280 -49092274 - MSTA LTR MaLR 0 428 181 486 233 60 17 chr6 140187382 140187608 -49091946 - L1MDb LINE L1 -4779 1627 1294 545 229 18 0 chr6 140187616 140187725 -49091829 - FLAM_A SINE Alu -21 121 11 1593 225 81 26 chr6 140187778 140188395 -49091159 - L1MDb LINE L1 -4987 1422 772 436 245 0 0 chr6 140188647 140188753 -49090801 - MER3 DNA MER1_type -98 111 6 224 296 0 31 chr6 140188813 140188911 -49090643 + A-rich Low_complexity Low_complexity 3 97 0 476 328 88 0 chr6 140190228 140190399 -49089155 + MIR SINE MIR 66 251 -11 219 221 176 0 chr6 140191166 140191234 -49088320 - MIR SINE MIR -111 151 72 2369 95 3 0 chr6 140192870 140193175 -49086379 - AluSx SINE Alu -6 306 1 4425 101 10 18 chr6 140193869 140194540 -49085014 - L1PA13 LINE L1 -1 6162 5497 268 271 68 0 chr6 140194839 140194898 -49084656 + L2 LINE L2 3247 3309 -4 306 67 0 0 chr6 140196958 140197003 -49082551 + (CA)n Simple_repeat Simple_repeat 2 46 0 672 247 179 45 chr6 140198421 140198733 -49080821 + L2 LINE L2 2948 3301 -12 354 295 0 29 chr6 140199674 140199779 -49079775 + L2 LINE L2 3171 3272 0 339 288 0 76 chr6 140201082 140201200 -49078354 + MER5B DNA MER1_type 66 174 -4 427 261 152 6 chr6 140202098 140202263 -49077291 - L3 LINE CR1 -2 1575 1387 287 256 13 0 chr6 140203088 140203166 -49076388 - MIR SINE MIR 0 262 184 481 259 80 10 chr6 140206889 140207090 -49072464 + L1MC5 LINE L1 7712 7926 -35 21 0 0 0 chr6 140208699 140208720 -49070834 + AT_rich Low_complexity Low_complexity 1 21 0 467 276 64 6 chr6 140209691 140209847 -49069707 + MIR SINE MIR 40 204 -58 2182 73 3 21 chr6 140210176 140210487 -49069067 + AluY SINE Alu 1 306 0 222 339 32 24 chr6 140211076 140211200 -49068354 - MIR SINE MIR -98 164 40 207 0 0 0 chr6 140211476 140211499 -49068055 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1835 170 0 0 chr6 140211730 140212001 -49067553 - AluJb SINE Alu -36 276 6 310 322 11 11 chr6 140212220 140212307 -49067247 + MIR SINE MIR 17 103 -105 494 246 70 68 chr6 140212392 140212692 -49066862 + LTR33 LTR ERVL 3 363 -158 838 243 81 0 chr6 140212705 140212878 -49066676 + MER5A DNA MER1_type 3 189 0 434 270 40 8 chr6 140212887 140213013 -49066541 - MER5A DNA MER1_type -57 132 3 359 123 46 15 chr6 140213292 140213357 -49066197 - MLT1B LTR MaLR -2 388 322 * 758 203 47 0 chr6 140213355 140213503 -49066051 - MLT1B LTR MaLR -235 155 1 1475 171 97 89 chr6 140213525 140213918 -49065636 + MSTD LTR MaLR 1 396 0 730 174 96 30 chr6 140214011 140214178 -49065376 - MER5B DNA MER1_type 0 178 1 201 321 12 49 chr6 140214910 140214991 -49064563 + MIR3 SINE MIR 128 205 -3 33 25 0 0 chr6 140215150 140215190 -49064364 + AT_rich Low_complexity Low_complexity 1 40 0 234 284 126 0 chr6 140216248 140216343 -49063211 - MLT1K LTR MaLR -411 177 71 23 54 0 0 chr6 140216775 140216812 -49062742 + AT_rich Low_complexity Low_complexity 1 37 0 401 248 131 0 chr6 140216954 140217099 -49062455 + L2 LINE L2 3150 3313 0 385 303 79 45 chr6 140219007 140219274 -49060280 - L1ME4a LINE L1 -174 5947 5672 229 210 0 97 chr6 140219285 140219347 -49060207 - AluJ/monomer SINE Alu 0 302 247 502 275 67 53 chr6 140219746 140220024 -49059530 - L1ME4a LINE L1 -174 5947 5661 1868 175 10 3 chr6 140220024 140220332 -49059222 - AluSx SINE Alu -2 310 1 502 275 67 53 chr6 140220332 140220413 -49059141 - L1ME4a LINE L1 -460 5661 5583 322 173 12 12 chr6 140220414 140220495 -49059059 + (TA)n Simple_repeat Simple_repeat 2 82 0 821 132 0 0 chr6 140221157 140221278 -49058276 + L1MB3 LINE L1 6049 6169 -14 677 229 34 6 chr6 140222041 140222216 -49057338 - MIR SINE MIR -6 256 77 216 67 0 0 chr6 140222603 140222633 -49056921 + (CA)n Simple_repeat Simple_repeat 1 30 0 444 313 23 0 chr6 140222910 140223038 -49056516 - MIR SINE MIR -128 134 4 630 331 107 0 chr6 140223109 140223381 -49056173 + L3 LINE CR1 1265 1565 -12 410 298 115 17 chr6 140223549 140223784 -49055770 + MIR SINE MIR 2 259 -3 881 276 41 16 chr6 140224533 140224779 -49054775 - MIR SINE MIR 0 262 11 700 167 0 0 chr6 140225777 140225897 -49053657 - pTR5 LTR ERV1 -2253 185 66 345 214 31 20 chr6 140225897 140225995 -49053559 - LTR30 LTR ERV1 -80 642 544 4492 138 25 62 chr6 140225995 140226996 -49052558 - pTR5 LTR ERV1 -413 2025 745 1142 241 43 9 chr6 140226996 140227419 -49052135 - L1M4 LINE L1 -2822 3324 2888 2795 182 52 7 chr6 140227436 140227980 -49051574 - L1MB7 LINE L1 -72 6112 5545 2208 76 4 4 chr6 140228037 140228312 -49051242 + AluSc SINE Alu 3 277 -32 404 335 91 18 chr6 140228365 140228696 -49050858 - L1MB7 LINE L1 -1130 5016 4662 21 71 0 0 chr6 140230059 140230101 -49049453 + AT_rich Low_complexity Low_complexity 1 42 0 426 250 104 42 chr6 140231057 140231201 -49048353 - L2 LINE L2 -3 3310 3158 260 251 69 63 chr6 140231208 140231383 -49048171 + MER104 DNA Tc2 2 177 -3 1879 265 48 21 chr6 140231435 140232074 -49047480 - L2 LINE L2 -239 3074 2411 439 236 50 29 chr6 140232240 140232380 -49047174 - MIR SINE MIR -42 220 78 1027 209 89 19 chr6 140232575 140232724 -49046830 + L1MDa LINE L1 2066 2203 -4337 1577 220 14 10 chr6 140232724 140233020 -49046534 + AluJb SINE Alu 1 297 -5 1027 209 89 19 chr6 140233020 140233195 -49046359 + L1MDa LINE L1 2203 2413 -4127 343 311 159 0 chr6 140236334 140236485 -49043069 + MIR SINE MIR 22 196 -66 1921 135 60 0 chr6 140236542 140236824 -49042730 + AluSx SINE Alu 1 299 -13 218 247 79 22 chr6 140238561 140238650 -49040904 + MIR SINE MIR 44 137 -125 790 322 41 31 chr6 140238744 140239163 -49040391 + LTR16A LTR ERVL 16 438 -12 3421 316 53 20 chr6 140239174 140240651 -49038903 + HERV16 LTR ERVL 1 1526 -3470 1374 341 27 33 chr6 140240682 140241347 -49038207 + HERV16 LTR ERVL 1783 2443 -3321 1200 131 0 0 chr6 140243269 140243437 -49036117 - AluSg/x SINE Alu -8 304 137 865 200 103 5 chr6 140243634 140243819 -49035735 + MER39 LTR ERV1 1 203 -504 258 208 104 38 chr6 140245116 140245222 -49034332 + L1MEc LINE L1 103 215 -6181 1030 252 41 78 chr6 140245230 140245714 -49033840 + L1MEc LINE L1 1449 1914 -4482 691 0 0 48 chr6 140245718 140245822 -49033732 + (TCTCCC)n Simple_repeat Simple_repeat 3 101 0 5359 75 26 54 chr6 140245822 140246640 -49032914 + SVA Other Other 72 866 -520 457 183 0 24 chr6 140246782 140246864 -49032690 - MER34C LTR ERV1 -488 97 18 540 239 43 53 chr6 140247456 140247644 -49031910 + MER53 DNA DNA 1 186 -3 189 274 20 20 chr6 140248029 140248080 -49031474 - MIR SINE MIR -120 142 92 948 227 0 0 chr6 140248220 140248383 -49031171 + FAM SINE Alu 2 164 -11 326 378 44 11 chr6 140248452 140248632 -49030922 - MIR3 SINE MIR -1 207 22 296 240 66 0 chr6 140248808 140248929 -49030625 - LTR37A LTR ERV1 -1 425 297 1177 216 18 88 chr6 140248967 140249365 -49030189 + MLT1A2 LTR MaLR 1 370 -4 607 260 140 29 chr6 140249735 140250050 -49029504 - MLT1L LTR MaLR -52 563 214 182 405 0 0 chr6 140250214 140250293 -49029261 + MIR SINE MIR 72 150 -58 322 301 89 41 chr6 140250644 140250790 -49028764 - MIR3 SINE MIR -17 191 39 205 175 25 0 chr6 140250828 140250868 -49028686 + CT-rich Low_complexity Low_complexity 2 42 0 489 300 39 11 chr6 140253057 140253237 -49026317 - MER5A DNA MER1_type -2 187 3 180 77 0 0 chr6 140253441 140253467 -49026087 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 480 283 127 56 chr6 140253509 140253960 -49025594 - L2 LINE L2 -100 3213 2731 190 250 0 0 chr6 140254636 140254676 -49024878 - L2 LINE L2 -11 3302 3263 882 235 12 1 chr6 140255101 140255438 -49024116 - MER93b LTR ERV1 0 373 1 197 288 61 0 chr6 140255516 140255582 -49023972 - L3 LINE CR1 -65 1512 1443 496 143 0 0 chr6 140257094 140257171 -49022383 + MER89 LTR ERV1 4 80 -479 1076 177 28 44 chr6 140257227 140257476 -49022078 + MER89 LTR ERV1 306 550 -9 225 296 12 37 chr6 140257476 140257557 -49021997 + L2 LINE L2 3194 3272 0 331 349 8 8 chr6 140257612 140257738 -49021816 + MIR3 SINE MIR 43 168 -40 306 273 189 0 chr6 140258545 140258677 -49020877 + L2 LINE L2 1564 1720 -1594 25 51 0 0 chr6 140258722 140258761 -49020793 + AT_rich Low_complexity Low_complexity 1 39 0 2048 149 3 0 chr6 140259006 140259308 -49020246 + AluSx SINE Alu 3 305 -7 599 300 86 4 chr6 140259334 140259591 -49019963 + L1M4 LINE L1 4702 4979 -1167 705 312 16 32 chr6 140259616 140259866 -49019688 + L2 LINE L2 2395 2640 -674 484 312 90 8 chr6 140259887 140260153 -49019401 - LTR16C LTR ERVL -70 421 134 323 322 144 6 chr6 140260250 140260430 -49019124 + L2 LINE L2 2624 2828 -486 285 242 78 128 chr6 140260486 140260792 -49018762 + L2 LINE L2 3021 3311 -2 17139 48 4 2 chr6 140261070 140264009 -49015545 - L1PA5 LINE L1 0 6154 3212 535 264 33 43 chr6 140265070 140265369 -49014185 + MER34B LTR ERV1 270 565 0 1368 255 20 16 chr6 140265490 140265890 -49013664 - L1PA7 LINE L1 -313 5858 5453 2155 63 0 0 chr6 140265890 140266199 -49013355 + L1PA7 LINE L1 5868 6182 0 1368 255 20 16 chr6 140266199 140266244 -49013310 - L1MB2 LINE L1 -718 5453 5410 848 338 61 2 chr6 140266436 140266844 -49012710 + MLT1K LTR MaLR 67 498 -90 2172 135 0 0 chr6 140266907 140267219 -49012335 - AluSx SINE Alu 0 312 1 235 363 176 0 chr6 140267346 140267550 -49012004 + L2 LINE L2 2174 2413 -901 190 300 14 14 chr6 140267636 140267706 -49011848 + L2 LINE L2 3244 3313 0 2268 109 0 0 chr6 140268243 140268546 -49011008 + AluY SINE Alu 1 303 -8 2097 144 48 17 chr6 140269157 140269510 -49010044 + THE1B LTR MaLR 1 364 0 252 0 0 0 chr6 140269652 140269680 -49009874 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1355 151 4 0 chr6 140269783 140270008 -49009546 - MER46B DNA MER2_type -135 101 1 442 269 87 44 chr6 140270037 140270312 -49009242 - L1MB2 LINE L1 -777 5369 5083 1270 229 61 28 chr6 140270661 140271023 -49008531 + MLT1A2 LTR MaLR 1 374 0 1761 143 3 23 chr6 140273346 140273646 -49005908 - AluSx SINE Alu -18 294 1 340 146 85 0 chr6 140273698 140273780 -49005774 - L1M4 LINE L1 -963 5183 5095 22 0 0 0 chr6 140273784 140273806 -49005748 + AT_rich Low_complexity Low_complexity 1 22 0 334 256 124 16 chr6 140274193 140274322 -49005232 - MIR SINE MIR -81 181 39 507 209 0 0 chr6 140275386 140275496 -49004058 + (TATATG)n Simple_repeat Simple_repeat 5 114 0 5895 53 4 0 chr6 140275499 140276267 -49003287 - L1PA7 LINE L1 -22 6132 5362 704 316 21 13 chr6 140276276 140276771 -49002783 + HERV16 LTR ERVL 2864 3446 -2318 453 289 92 31 chr6 140276793 140277053 -49002501 + HERV16 LTR ERVL 3372 3557 -1439 1099 305 71 31 chr6 140277063 140277736 -49001818 + HERV16 LTR ERVL 3936 4635 -1129 329 315 66 15 chr6 140277837 140278034 -49001520 + HERV16 LTR ERVL 4903 5109 -655 412 239 11 34 chr6 140278312 140278488 -49001066 + C-rich Low_complexity Low_complexity 6 177 0 249 329 74 22 chr6 140278967 140279198 -49000356 + L2 LINE L2 2813 3055 -217 1449 221 46 38 chr6 140279422 140279793 -48999761 - MLT1A2 LTR MaLR 0 374 1 2153 138 45 20 chr6 140280198 140280553 -48999001 + THE1B LTR MaLR 1 364 0 261 57 0 0 chr6 140280557 140280592 -48998962 + (TG)n Simple_repeat Simple_repeat 2 36 0 1226 146 4 43 chr6 140281101 140281334 -48998220 + MLT2D LTR ERVL 5 228 -186 194 175 0 18 chr6 140281336 140281393 -48998161 + CT-rich Low_complexity Low_complexity 2 57 0 206 311 66 38 chr6 140281505 140281611 -48997943 + L2 LINE L2 3146 3254 -18 323 243 40 0 chr6 140282791 140282865 -48996689 + L3 LINE CR1 1005 1081 -496 481 350 77 33 chr6 140283499 140283928 -48995626 + L3 LINE CR1 1128 1575 -2 24 32 0 0 chr6 140285412 140285443 -48994111 + AT_rich Low_complexity Low_complexity 1 31 0 386 267 58 25 chr6 140286212 140286332 -48993222 + MLT1D LTR MaLR 1 124 -381 2269 101 0 3 chr6 140286333 140286630 -48992924 + AluSg SINE Alu 1 296 -14 1290 112 0 0 chr6 140286630 140286800 -48992754 + AluSq SINE Alu 134 303 -10 532 245 123 29 chr6 140286892 140287096 -48992458 + MLT1D LTR MaLR 278 500 -5 2052 115 86 12 chr6 140287234 140287573 -48991981 - THE1B LTR MaLR 0 364 1 1640 160 35 26 chr6 140287998 140288341 -48991213 - L1MA4 LINE L1 -6 6294 5949 642 299 142 39 chr6 140289057 140289328 -48990226 - L2 LINE L2 0 3313 3071 5527 114 49 0 chr6 140289328 140289586 -48989968 - L1PA16 LINE L1 -9 6157 5913 1965 125 23 20 chr6 140289586 140289891 -48989663 - AluSg SINE Alu -4 306 1 5527 114 49 0 chr6 140289891 140290797 -48988757 - L1PA16 LINE L1 -253 5913 4956 642 299 142 39 chr6 140290797 140291091 -48988463 - L2 LINE L2 -242 3071 2685 23 0 0 0 chr6 140291619 140291642 -48987912 + AT_rich Low_complexity Low_complexity 1 23 0 192 77 0 0 chr6 140292777 140292803 -48986751 + (A)n Simple_repeat Simple_repeat 1 26 0 189 0 0 0 chr6 140293100 140293121 -48986433 + (A)n Simple_repeat Simple_repeat 1 21 0 206 181 14 69 chr6 140294370 140294442 -48985112 + T-rich Low_complexity Low_complexity 2 69 0 30 27 0 0 chr6 140295586 140295623 -48983931 + AT_rich Low_complexity Low_complexity 1 37 0 2143 138 0 0 chr6 140295631 140295936 -48983618 - AluSx SINE Alu -7 305 1 7786 227 41 7 chr6 140296137 140298401 -48981153 + L1MC1 LINE L1 2805 5146 -1000 645 250 0 76 chr6 140298575 140298759 -48980795 - MER45A DNA AcHobo 0 178 9 3665 158 22 24 chr6 140298759 140299483 -48980071 + L1MC1 LINE L1 5395 6117 -216 1039 60 80 0 chr6 140299483 140299634 -48979920 - L1P LINE L1 -1746 4400 4238 193 293 61 50 chr6 140299634 140299733 -48979821 + L2 LINE L2 3191 3290 -23 1277 149 5 18 chr6 140299793 140300014 -48979540 + L1MC1 LINE L1 6108 6325 -8 1751 167 0 0 chr6 140300049 140300325 -48979229 + AluSg SINE Alu 27 302 -8 670 149 71 12 chr6 140302189 140302357 -48977197 + MER53 DNA DNA 2 179 -10 21 57 0 0 chr6 140302379 140302414 -48977140 + AT_rich Low_complexity Low_complexity 1 35 0 2529 54 3 0 chr6 140303681 140303979 -48975575 + AluY SINE Alu 1 299 -12 312 225 42 14 chr6 140304117 140304188 -48975366 + MIR SINE MIR 30 102 -106 370 374 66 0 chr6 140307521 140307687 -48971867 + MIR SINE MIR 46 222 -40 275 320 20 10 chr6 140307707 140307807 -48971747 - L3 LINE CR1 -50 1527 1427 194 282 12 24 chr6 140307822 140307907 -48971647 + L3 LINE CR1 791 874 -703 212 335 112 39 chr6 140308070 140308303 -48971251 - L3 LINE CR1 -122 1455 1206 22 35 0 0 chr6 140308486 140308515 -48971039 + AT_rich Low_complexity Low_complexity 1 29 0 1623 248 150 53 chr6 140309728 140310580 -48968974 - L2 LINE L2 -14 3299 2319 234 91 0 0 chr6 140310628 140310661 -48968893 + (CA)n Simple_repeat Simple_repeat 2 34 0 643 95 21 0 chr6 140310750 140310845 -48968709 - THE1A-int LTR MaLR -1481 99 3 1245 131 23 0 chr6 140310847 140311061 -48968493 - THE1A LTR MaLR 0 355 137 434 275 49 14 chr6 140311161 140311303 -48968251 - L2 LINE L2 -849 2465 2319 213 121 0 0 chr6 140311351 140311384 -48968170 + (CA)n Simple_repeat Simple_repeat 2 34 0 485 158 32 11 chr6 140311473 140311568 -48967986 - THE1A-int LTR MaLR -1481 99 3 2133 104 43 14 chr6 140311570 140311915 -48967639 - THE1A LTR MaLR 0 355 1 219 307 150 75 chr6 140311927 140312207 -48967347 + L2 LINE L2 2968 3268 -4 2366 121 8 8 chr6 140312676 140313031 -48966523 + THE1A LTR MaLR 1 355 0 304 356 119 23 chr6 140313032 140313293 -48966261 - L2 LINE L2 -343 2971 2686 1811 157 21 0 chr6 140313450 140313736 -48965818 + AluJo SINE Alu 5 296 -16 2455 74 0 6 chr6 140314037 140314349 -48965205 + AluY SINE Alu 1 310 -1 867 188 120 21 chr6 140315167 140315401 -48964153 + MSTA LTR MaLR 1 257 -171 1378 167 15 18 chr6 140315920 140316216 -48963338 + L1ME LINE L1 5285 5576 -590 333 320 33 8 chr6 140316267 140316389 -48963165 + MER91C DNA MER1_type 15 139 -1 436 331 39 0 chr6 140316992 140317170 -48962384 - MIR SINE MIR -31 231 47 549 208 83 60 chr6 140317624 140317792 -48961762 + MER5B DNA MER1_type 2 173 -5 356 302 87 47 chr6 140320014 140320198 -48959356 + L2 LINE L2 2187 2387 -927 2804 108 34 7 chr6 140320198 140320615 -48958939 - MSTA LTR MaLR 0 428 1 356 302 87 47 chr6 140320615 140320705 -48958849 + L2 LINE L2 2387 2472 -842 243 156 0 22 chr6 140321667 140321712 -48957842 - L2 LINE L2 -5 3308 3265 389 294 20 0 chr6 140324305 140324451 -48955103 - L1MC4a LINE L1 -1971 5837 5689 243 0 0 0 chr6 140324476 140324503 -48955051 + (CA)n Simple_repeat Simple_repeat 2 28 0 905 189 34 118 chr6 140324888 140325184 -48954370 + MLT1A1 LTR MaLR 1 271 -94 8698 47 1 0 chr6 140325329 140327187 -48952367 + L1PA5 LINE L1 4281 6151 -3 451 363 32 43 chr6 140327696 140328068 -48951486 + LTR16A LTR ERVL 68 435 -15 2304 86 13 0 chr6 140328731 140329032 -48950522 - AluSp SINE Alu -8 305 1 265 72 72 145 chr6 140329055 140329124 -48950430 + L1MA2 LINE L1 6040 6103 -201 1444 126 38 4 chr6 140329126 140329388 -48950166 + L1MA2 LINE L1 6034 6304 0 255 121 52 0 chr6 140329719 140329777 -48949777 + GA-rich Low_complexity Low_complexity 2 62 0 21 0 0 0 chr6 140330048 140330069 -48949485 + AT_rich Low_complexity Low_complexity 1 21 0 399 231 0 0 chr6 140330656 140330747 -48948807 - MLT1A1 LTR MaLR 0 365 275 474 92 0 13 chr6 140330847 140330923 -48948631 + MER101 LTR ERV1 400 474 0 224 30 30 0 chr6 140330935 140330968 -48948586 + (TTTTG)n Simple_repeat Simple_repeat 5 38 0 1876 124 15 4 chr6 140330968 140331241 -48948313 - AluSx SINE Alu -32 280 5 21 57 0 0 chr6 140331641 140331676 -48947878 + AT_rich Low_complexity Low_complexity 1 35 0 6062 49 52 1 chr6 140331733 140332564 -48946990 - L1PA7 LINE L1 -1 6153 5281 299 277 31 57 chr6 140332579 140332738 -48946816 - MIR SINE MIR -63 199 45 779 217 84 54 chr6 140333058 140333450 -48946104 - L1MC5 LINE L1 -24 7937 7534 248 267 324 0 chr6 140333550 140333655 -48945899 + MIR3 SINE MIR 42 180 -28 246 238 75 25 chr6 140334150 140334230 -48945324 + MIR SINE MIR 113 196 -66 237 139 0 0 chr6 140335216 140335259 -48944295 + (TTTC)n Simple_repeat Simple_repeat 3 45 0 2024 125 0 0 chr6 140337624 140337942 -48941612 + AluSx SINE Alu 1 318 0 288 0 0 0 chr6 140338132 140338164 -48941390 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 383 355 9 43 chr6 140339086 140339297 -48940257 + MIR SINE MIR 28 231 -31 243 188 0 0 chr6 140339317 140339381 -48940173 + L1MC4 LINE L1 6640 6703 -1339 766 118 37 74 chr6 140339396 140339531 -48940023 - FLAM_C SINE Alu -3 130 1 659 240 58 31 chr6 140339779 140340004 -48939550 - MIR SINE MIR -10 252 22 231 276 70 92 chr6 140340010 140340195 -48939359 + MIR SINE MIR 20 200 -62 183 326 33 33 chr6 140341549 140341641 -48937913 + MIR3 SINE MIR 1 92 -116 2227 128 0 0 chr6 140341651 140341956 -48937598 - AluSx SINE Alu -7 305 1 32 75 0 0 chr6 140343483 140343550 -48936004 + AT_rich Low_complexity Low_complexity 1 67 0 191 359 88 11 chr6 140345072 140345253 -48934301 + L3b LINE CR1 1378 1572 -11 825 165 0 0 chr6 140345659 140345792 -48933762 + FLAM_C SINE Alu 1 133 0 662 271 10 83 chr6 140348672 140348960 -48930594 - MLT1H1 LTR MaLR -288 267 1 199 277 46 31 chr6 140349364 140349429 -48930125 + L2 LINE L2 3236 3301 -12 371 342 9 2 chr6 140349480 140349618 -48929936 - MIR3 SINE MIR -68 140 15 322 222 65 39 chr6 140350898 140351051 -48928503 - L1ME4a LINE L1 -49 6072 5916 496 338 100 8 chr6 140351114 140351702 -48927852 + L1MC4 LINE L1 7259 7900 -142 502 188 18 9 chr6 140351843 140351955 -48927599 - L1PA15 LINE L1 -6 6159 6047 1893 162 17 0 chr6 140351956 140352246 -48927308 - AluJb SINE Alu -17 295 1 428 268 89 0 chr6 140352262 140352475 -48927079 - L1ME4a LINE L1 -297 5824 5593 35 24 0 0 chr6 140354202 140354244 -48925310 + AT_rich Low_complexity Low_complexity 1 42 0 330 217 75 58 chr6 140354382 140354502 -48925052 + MIR SINE MIR 32 153 -109 625 277 30 10 chr6 140354557 140354759 -48924795 + LTR16A LTR ERVL 245 450 0 573 266 0 0 chr6 140356505 140356633 -48922921 - FLAM_A SINE Alu -5 128 1 222 222 52 148 chr6 140357132 140357230 -48922324 + MIR SINE MIR 23 106 -102 2200 111 3 0 chr6 140357230 140357528 -48922026 + AluSx SINE Alu 1 299 -13 222 222 52 148 chr6 140357528 140357564 -48921990 + MIR SINE MIR 106 144 -64 303 295 95 46 chr6 140357717 140357922 -48921632 - MIR SINE MIR -51 211 6 222 295 84 0 chr6 140359446 140359541 -48920013 - MIR SINE MIR -106 156 54 334 256 23 105 chr6 140360628 140360724 -48918830 + L1MDa LINE L1 1913 1990 -4550 2230 119 0 0 chr6 140360724 140361036 -48918518 - AluSx SINE Alu 0 312 1 334 256 23 105 chr6 140361036 140361111 -48918443 + L1MDa LINE L1 1990 2070 -4470 319 198 25 12 chr6 140361231 140361312 -48918242 + HAL1 LINE L1 1794 1875 -632 235 229 43 79 chr6 140361963 140362103 -48917451 + L1ME3A LINE L1 5965 6099 -71 1081 264 126 24 chr6 140362236 140362919 -48916635 + L2 LINE L2 2569 3312 -1 1604 209 55 25 chr6 140363254 140363617 -48915937 + MLT1A2 LTR MaLR 1 374 0 398 326 60 38 chr6 140364377 140364561 -48914993 + MIR3 SINE MIR 16 203 -5 2724 234 14 0 chr6 140364614 140365378 -48914176 + L1MDa LINE L1 2833 3607 -2933 293 301 40 45 chr6 140365604 140365803 -48913751 - L1MC/D LINE L1 -2006 5802 5605 21 0 0 0 chr6 140365961 140365982 -48913572 + AT_rich Low_complexity Low_complexity 1 21 0 1255 129 65 0 chr6 140365984 140366201 -48913353 - L1PB2 LINE L1 0 6867 6637 15231 174 33 6 chr6 140366203 140367976 -48911578 - L1PB2 LINE L1 -454 6413 4689 8808 113 12 6 chr6 140367976 140369255 -48910299 - HSMAR1 DNA Mariner 0 1287 1 15231 174 33 6 chr6 140369255 140373709 -48905845 - L1PB2 LINE L1 -2178 4689 1 2435 223 16 31 chr6 140373717 140374485 -48905069 + L1MDa LINE L1 3588 4343 -2197 432 0 0 0 chr6 140374486 140374534 -48905020 + (CA)n Simple_repeat Simple_repeat 2 49 0 2198 128 12 39 chr6 140374538 140374952 -48904602 - L1M2 LINE L1 -655 5657 5255 2641 159 19 17 chr6 140374960 140375489 -48904065 + L1MA7 LINE L1 5758 6287 -4 5343 191 17 26 chr6 140375499 140375770 -48903784 + L1MB7 LINE L1 4346 4618 -1960 2155 89 6 19 chr6 140375770 140376084 -48903470 - AluY SINE Alu 0 311 2 5343 191 17 26 chr6 140376084 140378043 -48901511 + L1MB7 LINE L1 4618 6550 -28 35 41 0 0 chr6 140378857 140378906 -48900648 + AT_rich Low_complexity Low_complexity 1 49 0 424 327 26 51 chr6 140379000 140379156 -48900398 - L2 LINE L2 0 3272 3121 275 336 25 17 chr6 140379457 140379576 -48899978 - MIR SINE MIR -24 238 119 3601 44 0 7 chr6 140381211 140381662 -48897892 - LTR7 LTR ERV1 -2 448 1 2420 77 45 13 chr6 140381662 140382040 -48897514 - HERVH LTR ERV1 0 7713 7324 1313 115 23 14 chr6 140382040 140382258 -48897296 - HERVH LTR ERV1 -1894 5819 5600 4226 133 1 1 chr6 140382259 140382921 -48896633 - HERVH LTR ERV1 -2564 5149 4488 3237 106 6 2 chr6 140382923 140383423 -48896131 - HERVH LTR ERV1 -3720 3993 3492 * 19301 85 57 48 chr6 140383413 140386675 -48892879 - HERVH LTR ERV1 -4423 3290 1 3535 40 7 11 chr6 140386677 140387127 -48892427 - LTR7 LTR ERV1 -2 448 1 342 336 53 9 chr6 140388057 140388422 -48891132 + L1ME LINE L1 5436 5819 -302 532 213 16 0 chr6 140388776 140388903 -48890651 - L1ME1 LINE L1 -5 6161 6033 425 179 90 48 chr6 140388870 140389015 -48890539 - L1MEc LINE L1 -3979 2417 2267 * 357 206 14 0 chr6 140389020 140389093 -48890461 + MER33 DNA MER1_type 7 80 -244 1500 123 51 24 chr6 140389120 140389413 -48890141 + L1MA7 LINE L1 5945 6245 -46 5768 154 26 7 chr6 140389416 140390390 -48889164 + L1M1 LINE L1 16 1007 -6558 2841 296 48 28 chr6 140390387 140392003 -48887551 - L1MEc LINE L1 -4693 1703 56 * 2098 131 59 11 chr6 140392225 140392583 -48886971 - THE1C LTR MaLR 0 375 1 363 323 89 61 chr6 140392689 140393082 -48886472 + LTR33 LTR ERVL 103 506 -15 186 353 68 32 chr6 140393118 140393367 -48886187 + L2 LINE L2 835 1092 -2222 356 191 169 0 chr6 140393460 140393549 -48886005 + MER94 DNA DNA 28 131 -3 26 30 0 0 chr6 140395525 140395558 -48883996 + AT_rich Low_complexity Low_complexity 1 33 0 1331 196 8 15 chr6 140396050 140396310 -48883244 - AluJo SINE Alu -54 258 1 28 0 0 0 chr6 140396775 140396803 -48882751 + AT_rich Low_complexity Low_complexity 1 28 0 267 349 67 7 chr6 140397716 140397865 -48881689 + MIR3 SINE MIR 47 204 -4 2447 68 3 0 chr6 140397883 140398179 -48881375 - AluSc SINE Alu -12 297 1 250 331 96 24 chr6 140398657 140398823 -48880731 - MIR SINE MIR -2 260 83 249 306 37 56 chr6 140398973 140399038 -48880516 + L2 LINE L2 3208 3272 -41 540 288 109 63 chr6 140399038 140399468 -48880086 + LTR16A LTR ERVL 1 450 0 249 306 37 56 chr6 140399468 140399510 -48880044 + L2 LINE L2 3272 3313 0 736 243 20 45 chr6 140399750 140399952 -48879602 + MIR SINE MIR 19 215 -47 2994 84 12 0 chr6 140400260 140400666 -48878888 - L1PA13 LINE L1 -2 6161 5751 359 248 135 57 chr6 140400673 140400814 -48878740 - L2 LINE L2 -1 3312 3161 2365 68 3 10 chr6 140401510 140401806 -48877748 - AluSp SINE Alu -19 294 1 304 200 40 13 chr6 140402403 140402478 -48877076 - L3 LINE CR1 -1 1576 1500 390 264 106 35 chr6 140402822 140403228 -48876326 + L1MC4 LINE L1 4809 5243 -903 1673 201 118 44 chr6 140403273 140403659 -48875895 + L1MC4 LINE L1 5406 5841 -1967 2242 106 0 7 chr6 140403659 140403961 -48875593 + AluSq SINE Alu 1 300 -13 1673 201 118 44 chr6 140403961 140404092 -48875462 + L1MC4 LINE L1 5841 5961 -1847 3607 225 88 50 chr6 140404152 140404247 -48875307 + L1MC4 LINE L1 6110 6200 -1608 1965 148 7 0 chr6 140404247 140404544 -48875010 + AluJb SINE Alu 1 299 -13 3607 225 88 50 chr6 140404544 140405098 -48874456 + L1MC4 LINE L1 6200 6732 -1076 710 34 0 0 chr6 140405098 140405186 -48874368 + L1PA5 LINE L1 6065 6152 -2 3607 225 88 50 chr6 140405186 140406148 -48873406 + L1MC4 LINE L1 6732 7713 -95 254 357 164 0 chr6 140408232 140408372 -48871182 + MER91A DNA MER1_type 14 176 -20 229 274 52 111 chr6 140409265 140409418 -48870136 - MIR3 SINE MIR -59 149 6 2183 220 139 72 chr6 140409466 140410612 -48868942 + MER69B DNA AcHobo 1 1223 -3 481 349 102 33 chr6 140410979 140411314 -48868240 + MER115 DNA AcHobo 91 448 -245 267 185 37 0 chr6 140411309 140411363 -48868191 + Zaphod DNA AcHobo 3976 4031 0 * 479 227 7 35 chr6 140411402 140411543 -48868011 - MER119 DNA MER1_type 0 583 447 415 309 73 0 chr6 140411534 140411657 -48867897 - MER119 DNA MER1_type -450 133 2 * 713 248 230 43 chr6 140411699 140412219 -48867335 + MLT1G1 LTR MaLR 1 588 -2 261 217 17 33 chr6 140414375 140414435 -48865119 - L2 LINE L2 0 3313 3255 567 208 0 0 chr6 140414438 140414534 -48865020 - FAM SINE Alu -47 138 43 23 54 0 0 chr6 140414534 140414571 -48864983 + AT_rich Low_complexity Low_complexity 1 37 0 560 308 113 5 chr6 140415960 140416181 -48863373 - MIR SINE MIR -14 248 4 2134 171 22 18 chr6 140417101 140417556 -48861998 + L1MB4 LINE L1 5723 6179 -1 338 295 18 27 chr6 140417846 140417958 -48861596 + L2 LINE L2 3161 3271 -1 1212 57 0 13 chr6 140418047 140418205 -48861349 + L1PA5 LINE L1 5993 6148 -6 664 266 106 47 chr6 140418418 140419137 -48860417 + L1ME4a LINE L1 5357 6117 -4 2335 97 3 0 chr6 140419225 140419525 -48860029 + AluSq SINE Alu 2 302 -11 191 299 183 30 chr6 140419562 140419726 -48859828 - MIR SINE MIR -54 208 20 846 121 8 0 chr6 140419728 140419860 -48859694 - L1PB1 LINE L1 -1 6150 6018 588 274 93 44 chr6 140420083 140420309 -48859245 + MIR SINE MIR 12 248 -14 22 0 0 0 chr6 140423427 140423449 -48856105 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr6 140424115 140424146 -48855408 + AT_rich Low_complexity Low_complexity 1 31 0 239 259 0 0 chr6 140424491 140424545 -48855009 - L2 LINE L2 -19 3294 3241 262 211 39 0 chr6 140426616 140426668 -48852886 - MIR SINE MIR -5 257 204 338 306 104 80 chr6 140428490 140428905 -48850649 + L1M2 LINE L1 668 1092 -5757 * 394 293 110 87 chr6 140428590 140429438 -48850116 - L1M2 LINE L1 -5433 1416 550 31 76 0 0 chr6 140431791 140431857 -48847697 + AT_rich Low_complexity Low_complexity 1 66 0 216 0 0 0 chr6 140433800 140433824 -48845730 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 232 200 36 0 chr6 140434283 140434338 -48845216 + CT-rich Low_complexity Low_complexity 1 57 0 2471 88 3 0 chr6 140435649 140435957 -48843597 + AluSp SINE Alu 1 309 -4 705 252 70 52 chr6 140436005 140436235 -48843319 + MIR SINE MIR 6 239 -23 1947 153 0 3 chr6 140437031 140437326 -48842228 + AluJo SINE Alu 2 295 -17 26 50 0 0 chr6 140441569 140441609 -48837945 + AT_rich Low_complexity Low_complexity 1 40 0 1876 171 0 28 chr6 140441693 140442014 -48837540 - AluJb SINE Alu 0 312 1 858 137 0 0 chr6 140442836 140442960 -48836594 - AluJb SINE Alu -24 288 165 377 347 79 23 chr6 140443985 140444201 -48835353 - MIR SINE MIR -29 233 6 878 195 31 0 chr6 140445772 140445931 -48833623 + FRAM SINE Alu 1 164 -2 2258 108 0 0 chr6 140446526 140446822 -48832732 + AluSg SINE Alu 1 296 -14 1142 155 0 0 chr6 140447252 140447420 -48832134 - AluJb SINE Alu -16 296 129 194 219 206 0 chr6 140447426 140447499 -48832055 + MIR SINE MIR 168 255 -7 2073 128 14 3 chr6 140447562 140447858 -48831696 - AluSx SINE Alu -13 299 1 270 268 248 20 chr6 140447993 140448146 -48831408 - MIR3 SINE MIR -3 205 18 462 309 56 87 chr6 140448550 140449102 -48830452 + L2 LINE L2 2740 3272 0 487 57 57 0 chr6 140449455 140449525 -48830029 - L1PA11 LINE L1 -194 5980 5907 10818 33 5 86 chr6 140449528 140451032 -48828522 + SVA Other Other 5 1386 0 289 236 31 31 chr6 140451161 140451322 -48828232 + (TATAA)n Simple_repeat Simple_repeat 3 163 0 2308 66 7 7 chr6 140451406 140451709 -48827845 - AluY SINE Alu -7 304 2 422 230 28 22 chr6 140451753 140451931 -48827623 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 396 154 38 57 chr6 140451890 140452208 -48827346 + (TATAA)n Simple_repeat Simple_repeat 1 312 0 * 235 120 15 75 chr6 140452163 140452296 -48827258 + (TTATA)n Simple_repeat Simple_repeat 5 129 0 * 259 102 76 34 chr6 140452216 140452492 -48827062 + (TA)n Simple_repeat Simple_repeat 1 287 0 1367 261 81 20 chr6 140452684 140453286 -48826268 - L1ME3A LINE L1 -219 5951 5313 289 204 68 57 chr6 140453304 140453392 -48826162 - L2 LINE L2 -24 3289 3201 290 326 35 35 chr6 140454123 140454264 -48825290 + MIR SINE MIR 13 153 -109 192 283 0 0 chr6 140454360 140454406 -48825148 - L3b LINE CR1 -240 1343 1298 182 224 20 0 chr6 140454746 140454795 -48824759 - L3b LINE CR1 -351 1232 1183 7936 66 3 3 chr6 140455210 140456179 -48823375 - LTR5 LTR ERVK 0 969 1 183 42 0 0 chr6 140456193 140456217 -48823337 + (T)n Simple_repeat Simple_repeat 1 24 0 237 306 24 12 chr6 140456499 140456584 -48822970 + L2 LINE L2 3187 3272 0 281 282 39 83 chr6 140456589 140456745 -48822809 - MIR SINE MIR -84 178 30 2271 66 20 10 chr6 140457074 140457378 -48822176 - AluY SINE Alu -4 307 1 189 250 68 45 chr6 140457812 140457900 -48821654 + L2 LINE L2 2799 2888 -426 2476 42 0 16 chr6 140458405 140458713 -48820841 + AluY SINE Alu 1 303 -8 180 184 0 0 chr6 140459481 140459530 -48820024 + A-rich Low_complexity Low_complexity 1 49 0 626 0 0 0 chr6 140459610 140459682 -48819872 - tRNA-Glu-GAG tRNA tRNA -3 72 1 1105 181 53 10 chr6 140461321 140461624 -48817930 + MER33 DNA MER1_type 9 324 0 707 250 226 30 chr6 140461626 140462118 -48817436 - L1MC4 LINE L1 -75 7967 7380 1642 165 120 38 chr6 140462124 140462571 -48816983 + MLT1D LTR MaLR 1 471 -34 1247 181 95 101 chr6 140462581 140463095 -48816459 - L1MC4 LINE L1 -673 7369 6859 539 256 85 31 chr6 140463123 140463381 -48816173 - L1MC4 LINE L1 -1849 5959 5688 458 281 82 0 chr6 140463579 140463714 -48815840 - L2 LINE L2 0 3313 3168 3381 169 74 18 chr6 140463781 140464351 -48815203 + L1MD2 LINE L1 5523 6060 -299 300 27 0 0 chr6 140464351 140464388 -48815166 + (CA)n Simple_repeat Simple_repeat 2 38 0 3381 169 74 18 chr6 140464388 140464419 -48815135 + L1MD2 LINE L1 6060 6088 -271 2180 116 0 0 chr6 140464419 140464712 -48814842 + AluSx SINE Alu 1 293 -19 3381 169 74 18 chr6 140464712 140464877 -48814677 + L1MD2 LINE L1 6088 6333 -26 21 0 0 0 chr6 140464976 140464997 -48814557 + AT_rich Low_complexity Low_complexity 1 21 0 2029 126 3 0 chr6 140465937 140466223 -48813331 - AluSx SINE Alu -9 303 17 1642 171 87 0 chr6 140466228 140466515 -48813039 + AluJo SINE Alu 1 312 0 182 323 77 0 chr6 140467080 140467145 -48812409 - L2 LINE L2 -1 3271 3202 432 249 83 88 chr6 140467235 140467416 -48812138 - MIR SINE MIR -65 197 18 311 193 18 16 chr6 140467523 140467653 -48811901 + MER3 DNA MER1_type 1 208 -1 2172 73 13 40 chr6 140467904 140468205 -48811349 - AluSc SINE Alu -16 293 1 336 288 95 95 chr6 140470064 140470550 -48809004 + L1M2 LINE L1 533 1018 -5831 231 291 109 36 chr6 140471397 140471507 -48808047 + L2 LINE L2 3195 3312 -1 1659 146 52 50 chr6 140475721 140476007 -48803547 + MER2 DNA MER2_type 1 290 -54 1870 107 0 12 chr6 140476007 140476259 -48803295 - AluSx SINE Alu -4 308 60 1659 146 52 50 chr6 140476259 140476315 -48803239 + MER2 DNA MER2_type 290 344 0 484 282 198 41 chr6 140477513 140477596 -48801958 + L1ME4a LINE L1 5635 5704 -417 737 271 32 8 chr6 140477596 140477847 -48801707 + MIR SINE MIR 5 261 -1 484 282 198 41 chr6 140477847 140478157 -48801397 + L1ME4a LINE L1 5704 6090 -31 2082 123 7 7 chr6 140478804 140479105 -48800449 - AluSx SINE Alu -11 301 1 220 394 32 21 chr6 140480009 140480103 -48799451 - L2 LINE L2 -74 3198 3104 2105 121 0 25 chr6 140480108 140480422 -48799132 + AluSx SINE Alu 1 306 -6 1594 218 81 7 chr6 140480859 140481294 -48798260 - MLT1C LTR MaLR 0 467 1 270 302 115 30 chr6 140481771 140482018 -48797536 - MLT1H LTR MaLR -119 290 50 24 32 0 0 chr6 140484137 140484168 -48795386 + AT_rich Low_complexity Low_complexity 1 31 0 2338 108 10 0 chr6 140484451 140484758 -48794796 - AluSx SINE Alu -2 310 1 396 340 75 28 chr6 140484867 140485079 -48794475 + MIR SINE MIR 31 252 -10 488 301 0 0 chr6 140485300 140485413 -48794141 - MIR SINE MIR -119 143 31 2179 129 0 0 chr6 140485422 140485725 -48793829 + AluSx SINE Alu 1 303 -9 351 238 185 20 chr6 140485919 140486070 -48793484 + MER20B DNA MER1_type 2 177 -606 565 223 149 33 chr6 140486120 140486335 -48793219 + MER20B DNA MER1_type 539 778 -5 899 322 106 82 chr6 140486398 140487446 -48792108 - L3 LINE CR1 -156 1421 349 201 305 107 62 chr6 140487934 140488111 -48791443 - L3 LINE CR1 -1271 306 122 1785 162 21 0 chr6 140488554 140488844 -48790710 - AluSx SINE Alu -14 298 3 199 270 142 40 chr6 140491314 140491462 -48788092 + MIR SINE MIR 29 191 -71 211 380 32 49 chr6 140491961 140492429 -48787125 + L2 LINE L2 2219 2678 -636 248 159 29 43 chr6 140492497 140492566 -48786988 + MER117 DNA MER1_type 3 70 -127 2428 70 7 0 chr6 140492813 140493113 -48786441 - AluSq SINE Alu -11 302 1 253 191 85 0 chr6 140493190 140493284 -48786270 - L1MA8 LINE L1 -1 6290 6189 1954 136 0 3 chr6 140493527 140493813 -48785741 - AluSx SINE Alu -21 291 7 23 0 0 0 chr6 140494203 140494226 -48785328 + AT_rich Low_complexity Low_complexity 1 23 0 303 308 145 0 chr6 140495661 140495833 -48783721 - MIR SINE MIR -44 218 22 4122 177 91 21 chr6 140496014 140497300 -48782254 - L1MD2 LINE L1 -12 6347 4966 473 205 7 20 chr6 140497323 140497474 -48782080 + CT-rich Low_complexity Low_complexity 3 151 0 200 162 27 27 chr6 140497892 140497966 -48781588 + GA-rich Low_complexity Low_complexity 1 74 0 235 320 30 10 chr6 140499671 140499771 -48779783 + MIR SINE MIR 82 183 -79 201 330 96 43 chr6 140500652 140500767 -48778787 - MIR SINE MIR -121 141 21 250 309 82 18 chr6 140501817 140501927 -48777627 - MIR SINE MIR -70 138 21 2248 129 0 0 chr6 140502016 140502327 -48777227 + AluSx SINE Alu 1 311 -1 210 312 80 36 chr6 140502508 140502646 -48776908 + L2 LINE L2 3160 3303 -10 426 261 24 108 chr6 140503123 140503372 -48776182 - MER112 DNA MER1_type -16 244 17 494 230 87 0 chr6 140503763 140503889 -48775665 + MIR SINE MIR 111 247 -15 1327 81 0 11 chr6 140504119 140504293 -48775261 - AluY SINE Alu -11 300 129 650 170 9 0 chr6 140504295 140504407 -48775147 + AluSp/q SINE Alu 179 291 -22 1300 232 43 7 chr6 140504419 140504699 -48774855 + AluJo SINE Alu 1 290 -22 21 0 0 0 chr6 140505328 140505349 -48774205 + AT_rich Low_complexity Low_complexity 1 21 0 2008 121 7 23 chr6 140505407 140505713 -48773841 + AluSx SINE Alu 1 301 -11 277 317 84 52 chr6 140505997 140506090 -48773464 - L2 LINE L2 -36 3277 3188 1991 199 12 30 chr6 140506090 140506279 -48773275 - MSTD LTR MaLR 0 396 205 2214 96 36 3 chr6 140506279 140506580 -48772974 + AluSp SINE Alu 1 311 -2 1991 199 12 30 chr6 140506580 140506793 -48772761 - MSTD LTR MaLR -191 205 1 277 317 84 52 chr6 140506793 140506948 -48772606 - L2 LINE L2 -125 3188 3021 316 361 15 34 chr6 140507047 140507252 -48772302 - L2 LINE L2 -337 2977 2777 * 1343 294 133 34 chr6 140507248 140507985 -48771569 - L2 LINE L2 -867 2447 1638 398 312 35 21 chr6 140508217 140508358 -48771196 - MIR SINE MIR -108 154 12 34 65 0 0 chr6 140508450 140508512 -48771042 + AT_rich Low_complexity Low_complexity 1 62 0 543 334 194 41 chr6 140509295 140509770 -48769784 - L3 LINE CR1 -3 1574 1173 1508 170 3 63 chr6 140509770 140510070 -48769484 + AluJo SINE Alu 1 282 -30 543 334 194 41 chr6 140510070 140510101 -48769453 - L3 LINE CR1 -404 1173 1148 384 22 0 0 chr6 140510101 140510146 -48769408 + (TG)n Simple_repeat Simple_repeat 2 46 0 543 334 194 41 chr6 140510146 140510919 -48768635 - L3 LINE CR1 -429 1148 97 24 0 0 0 chr6 140511510 140511534 -48768020 + AT_rich Low_complexity Low_complexity 1 24 0 1780 147 56 0 chr6 140512668 140512953 -48766601 + AluSx SINE Alu 1 301 -11 201 121 0 0 chr6 140512953 140512986 -48766568 + (AGGGGG)n Simple_repeat Simple_repeat 2 34 0 234 321 73 9 chr6 140513783 140513892 -48765662 - MIR3 SINE MIR -11 197 82 2420 104 77 5 chr6 140514042 140514457 -48765097 - LTR56 LTR ERV1 0 445 1 409 222 43 109 chr6 140514680 140514910 -48764644 - MLT1K LTR MaLR 0 588 374 202 229 0 42 chr6 140515187 140515235 -48764319 - L2 LINE L2 -19 3253 3208 198 222 0 0 chr6 140515208 140515244 -48764310 - L2 LINE L2 -38 3275 3240 * 310 229 14 0 chr6 140515323 140515393 -48764161 + L3 LINE CR1 1502 1572 -5 219 36 0 0 chr6 140516606 140516634 -48762920 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 2854 112 98 44 chr6 140517396 140517959 -48761595 - LTR49 LTR ERV1 -2 593 1 1969 199 63 103 chr6 140517976 140518474 -48761080 - MER21B LTR ERV1 -114 749 289 2021 127 3 3 chr6 140518474 140518781 -48760773 - AluSx SINE Alu 0 307 1 1969 199 63 103 chr6 140518781 140519041 -48760513 - MER21B LTR ERV1 -574 289 20 5347 124 95 51 chr6 140519062 140519878 -48759676 + Tigger3b DNA MER2_type 36 814 -2214 1472 146 71 61 chr6 140519878 140520172 -48759382 - AluJo SINE Alu -13 299 3 5347 124 95 51 chr6 140520172 140520244 -48759310 + Tigger3b DNA MER2_type 814 881 -2147 2309 110 3 0 chr6 140520244 140520553 -48759001 - AluSg SINE Alu 0 310 1 5347 124 95 51 chr6 140520553 140520807 -48758747 + Tigger3b DNA MER2_type 881 1230 -1 1714 184 159 11 chr6 140522389 140522829 -48756725 + MLT1D LTR MaLR 1 505 0 273 323 77 60 chr6 140524238 140524473 -48755081 - MIR SINE MIR -2 260 22 1993 108 35 11 chr6 140524857 140525143 -48754411 + AluSc SINE Alu 1 293 -16 226 131 49 0 chr6 140525493 140525554 -48754000 + T-rich Low_complexity Low_complexity 2 65 0 34 24 0 0 chr6 140525705 140525746 -48753808 + AT_rich Low_complexity Low_complexity 1 41 0 208 340 105 39 chr6 140525789 140525942 -48753612 - MIR3 SINE MIR -15 193 31 534 269 43 45 chr6 140526069 140526284 -48753270 + MIR SINE MIR 6 226 -36 354 215 169 41 chr6 140526635 140526807 -48752747 + MER3 DNA MER1_type 14 207 -2 7253 45 7 0 chr6 140526956 140528172 -48751382 + L1PA6 LINE L1 4927 6151 -3 250 204 0 0 chr6 140528393 140528442 -48751112 - L2 LINE L2 0 3313 3265 24 0 0 0 chr6 140530459 140530483 -48749071 + AT_rich Low_complexity Low_complexity 1 24 0 5204 155 35 27 chr6 140530485 140531552 -48748002 - L1PB3 LINE L1 -5 6149 5056 2215 118 3 0 chr6 140531552 140531856 -48747698 - AluSg SINE Alu -5 305 1 5204 155 35 27 chr6 140531856 140532799 -48746755 - L1PB3 LINE L1 -1098 5056 4122 290 302 7 40 chr6 140533102 140533251 -48746303 - MIR SINE MIR -56 206 63 263 346 12 0 chr6 140534780 140534861 -48744693 + L2 LINE L2 3186 3267 -5 189 0 0 0 chr6 140535014 140535035 -48744519 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 216 304 8 88 chr6 140535040 140535057 -48744497 + L3 LINE CR1 901 918 -659 1747 97 0 4 chr6 140535057 140535284 -48744270 - AluSg/x SINE Alu -22 290 65 216 304 8 88 chr6 140535284 140535391 -48744163 + L3 LINE CR1 918 1015 -562 2399 87 0 0 chr6 140535705 140536015 -48743539 - AluY SINE Alu -1 310 1 187 333 132 38 chr6 140536156 140536315 -48743239 + L3 LINE CR1 1261 1434 -143 923 195 22 144 chr6 140536611 140536888 -48742666 - AluJo SINE Alu -22 290 48 1947 123 0 79 chr6 140536929 140537246 -48742308 - AluSx SINE Alu -17 295 4 273 336 66 8 chr6 140537342 140537464 -48742090 + L2 LINE L2 2956 3084 -188 1590 183 55 3 chr6 140537722 140538012 -48741542 + AluJo SINE Alu 1 305 -7 187 250 42 31 chr6 140538319 140538415 -48741139 - L2 LINE L2 -477 2837 2741 187 286 16 0 chr6 140539402 140539465 -48740089 + L2 LINE L2 3249 3312 -1 2239 119 0 0 chr6 140539709 140540011 -48739543 - AluSx SINE Alu -10 302 1 22 70 0 0 chr6 140540226 140540269 -48739285 + AT_rich Low_complexity Low_complexity 1 43 0 2552 86 0 0 chr6 140541118 140541431 -48738123 + AluSp SINE Alu 1 313 0 225 211 105 0 chr6 140541796 140541853 -48737701 + HAL1b LINE L1 517 579 -769 1964 141 37 7 chr6 140542085 140542384 -48737170 + AluSx SINE Alu 1 308 -4 1641 174 30 25 chr6 140542983 140543344 -48736210 - MLT1A1 LTR MaLR -2 363 1 427 310 42 19 chr6 140543345 140543561 -48735993 + L1ME4a LINE L1 5527 5747 -374 323 227 70 62 chr6 140543563 140543836 -48735718 + L1ME4a LINE L1 5789 6063 -58 1582 182 84 29 chr6 140543844 140544190 -48735364 + MLT1A1 LTR MaLR 1 365 0 240 303 101 18 chr6 140544476 140544585 -48734969 - MIR SINE MIR -118 144 27 24 0 0 0 chr6 140544860 140544884 -48734670 + AT_rich Low_complexity Low_complexity 1 24 0 1719 184 0 19 chr6 140545018 140545202 -48734352 - AluJo SINE Alu -8 304 127 207 0 0 0 chr6 140545202 140545225 -48734329 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1719 184 0 19 chr6 140545225 140545350 -48734204 - AluJo SINE Alu -185 127 1 2367 93 3 0 chr6 140545410 140545711 -48733843 + AluSp SINE Alu 1 302 -11 329 344 110 9 chr6 140545840 140546058 -48733496 - MIR SINE MIR -18 244 5 27 87 0 0 chr6 140546298 140546367 -48733187 + AT_rich Low_complexity Low_complexity 1 69 0 254 294 71 15 chr6 140547516 140547713 -48731841 - L1M4 LINE L1 -2202 3944 3737 277 316 202 21 chr6 140547726 140547919 -48731635 - MIR SINE MIR 0 262 35 660 210 80 143 chr6 140548805 140549342 -48730212 + MLT1D LTR MaLR 3 505 0 2113 138 0 3 chr6 140551076 140551381 -48728173 + AluJb SINE Alu 1 304 -8 221 0 35 0 chr6 140551462 140551491 -48728063 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr6 140552365 140552387 -48727167 + AT_rich Low_complexity Low_complexity 1 22 0 343 218 122 27 chr6 140552947 140553260 -48726294 - L1ME LINE L1 -457 5713 5352 257 170 19 0 chr6 140553341 140553394 -48726160 + MER116 DNA Mariner 1 54 -26 2303 90 0 3 chr6 140553405 140553695 -48725859 + AluSx SINE Alu 1 289 -23 460 287 33 6 chr6 140553755 140553936 -48725618 - L1ME LINE L1 -393 5728 5543 24 67 0 0 chr6 140554034 140554079 -48725475 + AT_rich Low_complexity Low_complexity 1 45 0 533 216 8 16 chr6 140554532 140554657 -48724897 + 7SK RNA RNA 2 125 -68 268 189 0 0 chr6 140554698 140554751 -48724803 + 7SK RNA RNA 133 185 -8 273 356 0 0 chr6 140554783 140554870 -48724684 + L2 LINE L2 2229 2315 -999 228 238 16 48 chr6 140555738 140555801 -48723753 + L2 LINE L2 3237 3297 -16 228 262 49 0 chr6 140557115 140557176 -48722378 - L2 LINE L2 -4 3268 3205 1126 145 0 0 chr6 140557870 140558036 -48721518 - FRAM SINE Alu 0 166 1 2053 132 3 23 chr6 140559078 140559381 -48720173 + AluSq SINE Alu 1 297 -16 2149 119 3 7 chr6 140559853 140560189 -48719365 - AluSx SINE Alu 0 312 1 2019 161 3 3 chr6 140560746 140561056 -48718498 + AluJb SINE Alu 1 310 -2 2027 143 0 10 chr6 140561197 140561511 -48718043 - AluSx SINE Alu -1 311 1 607 302 31 14 chr6 140562192 140562414 -48717140 + MIR SINE MIR 19 244 -18 964 173 24 39 chr6 140562698 140562988 -48716566 - L1MB7 LINE L1 0 6184 5925 * 2403 113 24 40 chr6 140562987 140563071 -48716483 - L1MA6 LINE L1 -237 6063 5979 2272 112 3 0 chr6 140563071 140563376 -48716178 - AluSq SINE Alu -7 306 1 2403 113 24 40 chr6 140563376 140563742 -48715812 - L1MA6 LINE L1 -321 5979 5620 308 192 71 10 chr6 140566617 140566716 -48712838 + MER103 DNA DNA 53 157 -9 184 237 290 32 chr6 140566779 140566872 -48712682 + L2 LINE L2 3197 3313 0 665 54 43 0 chr6 140567277 140567370 -48712184 - L1PA11 LINE L1 0 6174 6078 250 208 0 52 chr6 140568183 140568260 -48711294 + T-rich Low_complexity Low_complexity 2 74 0 230 315 65 0 chr6 140571381 140571473 -48708081 - MIR3 SINE MIR 0 208 111 1973 81 0 12 chr6 140571782 140572030 -48707524 + AluSx SINE Alu 36 280 -32 194 62 31 0 chr6 140572030 140572062 -48707492 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 945 220 37 14 chr6 140573468 140573682 -48705872 - MER20 DNA MER1_type 0 219 1 183 371 0 0 chr6 140573854 140573916 -48705638 + MIR SINE MIR 82 143 -119 262 98 0 98 chr6 140574107 140574158 -48705396 + MER75 DNA T2_type 469 514 0 25 0 0 0 chr6 140574158 140574183 -48705371 + AT_rich Low_complexity Low_complexity 1 25 0 1889 181 64 10 chr6 140574892 140575296 -48704258 - MSTB LTR MaLR 0 426 1 406 191 40 0 chr6 140575312 140575438 -48704116 + (TA)n Simple_repeat Simple_repeat 2 132 0 354 231 119 15 chr6 140575584 140575718 -48703836 - L1ME LINE L1 -511 5610 5463 1754 173 7 10 chr6 140575868 140576169 -48703385 + AluJb SINE Alu 1 300 -12 2094 134 3 0 chr6 140577046 140577338 -48702216 - AluSq SINE Alu -20 293 1 267 175 0 0 chr6 140578079 140578119 -48701435 - Alu SINE Alu -268 40 1 26 74 0 0 chr6 140578170 140578224 -48701330 + AT_rich Low_complexity Low_complexity 1 54 0 287 242 180 9 chr6 140578233 140578444 -48701110 - L1ME4a LINE L1 -43 6078 5832 400 287 107 44 chr6 140579403 140579720 -48699834 - MER102b DNA MER1_type -4 337 1 769 161 77 81 chr6 140579851 140580099 -48699455 - L1MA9 LINE L1 -2 6310 6064 2707 190 79 62 chr6 140580779 140581591 -48697963 - LTR1B LTR ERV1 0 826 1 259 221 59 15 chr6 140581594 140581662 -48697892 + L3 LINE CR1 1353 1423 -154 337 312 117 13 chr6 140581665 140581819 -48697735 - MIR SINE MIR -73 189 20 551 233 108 17 chr6 140582113 140582289 -48697265 + MIR SINE MIR 1 192 -70 269 219 0 86 chr6 140582863 140582968 -48696586 + MER113 DNA MER1_type? 5 100 -421 2143 122 0 7 chr6 140583066 140583354 -48696200 - AluSg SINE Alu -13 297 12 2345 94 0 16 chr6 140584613 140584921 -48694633 - AluSq SINE Alu -10 303 1 1953 148 0 7 chr6 140585148 140585445 -48694109 - AluSx SINE Alu 0 312 18 255 318 35 0 chr6 140587084 140587169 -48692385 + MIR SINE MIR 91 178 -84 3143 178 35 10 chr6 140588770 140588899 -48690655 - MER90 LTR ERV1 -3 611 487 2137 102 0 3 chr6 140588899 140589184 -48690370 + AluSg SINE Alu 12 295 -15 3143 178 35 10 chr6 140589184 140589649 -48689905 - MER90 LTR ERV1 -127 487 2 639 307 63 20 chr6 140589958 140590307 -48689247 + L1MC4a LINE L1 5534 5897 -1911 1974 80 73 89 chr6 140590308 140590707 -48688847 - LTR14B LTR ERVK 0 608 7 637 42 50 118 chr6 140590715 140590834 -48688720 - HERVK14 LTR ERVK 0 5945 5835 328 157 0 20 chr6 140590834 140590903 -48688651 - MER41C LTR ERV1 -493 61 7 5239 59 36 9 chr6 140590904 140591625 -48687929 - HERVK14 LTR ERVK -181 5764 5038 313 62 0 0 chr6 140591612 140591660 -48687894 - HERV17 LTR ERV1 -8145 481 434 * 1114 49 0 0 chr6 140591661 140591804 -48687750 - HERV17 LTR ERV1 -3073 5553 5411 1539 96 73 89 chr6 140591804 140592159 -48687395 - LTR14B LTR ERVK -51 557 1 250 262 29 39 chr6 140592249 140592352 -48687202 + L1MC4a LINE L1 6063 6164 -1644 21 71 0 0 chr6 140592352 140592394 -48687160 + AT_rich Low_complexity Low_complexity 1 42 0 301 267 62 68 chr6 140592398 140592481 -48687073 - L1MC4a LINE L1 -1754 6054 5972 2188 156 24 22 chr6 140592481 140592891 -48686663 - MLT2D LTR ERVL -3 411 1 301 267 62 68 chr6 140592891 140592983 -48686571 - L1MC4a LINE L1 -1836 5972 5880 384 330 35 5 chr6 140593374 140593571 -48685983 + L1ME LINE L1 5548 5750 -371 23 68 0 0 chr6 140593838 140593882 -48685672 + AT_rich Low_complexity Low_complexity 1 44 0 722 226 102 18 chr6 140595099 140595379 -48684175 - MER58B DNA MER1_type -2079 341 23 1853 159 52 25 chr6 140595379 140595744 -48683810 + THE1C LTR MaLR 1 375 0 722 226 102 18 chr6 140595744 140595767 -48683787 - MER58B DNA MER1_type -2397 23 3 196 344 65 65 chr6 140595793 140595886 -48683668 - L2 LINE L2 -37 3235 3143 258 358 65 31 chr6 140595914 140596238 -48683316 + L2 LINE L2 961 1295 -2019 408 287 43 43 chr6 140596453 140596617 -48682937 - MER5B DNA MER1_type -14 164 1 848 180 13 87 chr6 140596922 140597538 -48682016 - MER4C LTR ERV1 0 695 1 748 177 0 27 chr6 140599920 140600067 -48679487 - FLAM_C SINE Alu 0 143 1 2239 122 0 0 chr6 140600486 140600782 -48678772 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr6 140600989 140601010 -48678544 + AT_rich Low_complexity Low_complexity 1 21 0 197 291 47 47 chr6 140601314 140601400 -48678154 - MIR3 SINE MIR -32 176 91 402 213 124 24 chr6 140602246 140602415 -48677139 - L1MC5 LINE L1 -65 7896 7711 258 105 0 0 chr6 140603025 140603063 -48676491 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 284 222 25 62 chr6 140603063 140603134 -48676420 - L2 LINE L2 -13 3259 3190 21 0 0 0 chr6 140603895 140603916 -48675638 + AT_rich Low_complexity Low_complexity 1 21 0 2224 226 42 30 chr6 140603917 140604893 -48674661 + L1M4b LINE L1 16 1076 -5783 2261 108 0 3 chr6 140605387 140605683 -48673871 + AluSx SINE Alu 1 295 -17 31 26 0 0 chr6 140608598 140608636 -48670918 + AT_rich Low_complexity Low_complexity 1 38 0 255 234 0 0 chr6 140608810 140608887 -48670667 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 1967 130 14 0 chr6 140609436 140609742 -48669812 + AluSq SINE Alu 3 312 0 1794 137 78 33 chr6 140611082 140611441 -48668113 + THE1C LTR MaLR 1 375 0 861 184 65 25 chr6 140611985 140612186 -48667368 + MER3 DNA MER1_type 1 209 0 1598 171 17 34 chr6 140612473 140612765 -48666789 + AluJb SINE Alu 1 287 -25 2188 73 0 73 chr6 140612768 140613126 -48666428 + AluSp SINE Alu 1 313 0 2313 100 0 13 chr6 140614220 140614529 -48665025 + AluSx SINE Alu 1 305 -7 444 252 92 17 chr6 140614541 140614660 -48664894 + MIR SINE MIR 2 129 -133 8745 39 2 2 chr6 140614696 140616520 -48663034 - L1PA5 LINE L1 0 6154 4301 313 218 238 0 chr6 140616520 140616621 -48662933 + MIR SINE MIR 117 241 -21 638 221 140 50 chr6 140617088 140617313 -48662241 - L1MC/D LINE L1 -743 5403 5494 2195 125 0 3 chr6 140617313 140617618 -48661936 + AluSg SINE Alu 5 308 -2 638 221 140 50 chr6 140617618 140617921 -48661633 - L1MC/D LINE L1 -651 5495 5221 2332 85 0 0 chr6 140617944 140618239 -48661315 - AluY SINE Alu -16 295 1 5584 67 23 3 chr6 140618338 140619089 -48660465 + MER4E LTR ERV1 1 766 0 472 281 138 5 chr6 140619481 140619677 -48659877 - MIR SINE MIR -10 252 31 315 324 60 71 chr6 140619756 140619938 -48659616 + L2 LINE L2 3082 3261 -11 346 273 58 8 chr6 140619967 140620088 -48659466 - MIR3 SINE MIR -78 130 4 527 181 205 16 chr6 140620642 140620769 -48658785 + MIR SINE MIR 59 209 -53 770 232 109 15 chr6 140620974 140621241 -48658313 - L1ME LINE L1 -548 5616 5325 1925 130 0 32 chr6 140621248 140621564 -48657990 - AluJb SINE Alu -2 310 5 702 283 60 44 chr6 140621901 140622152 -48657402 - MIR SINE MIR -1 261 7 596 333 134 32 chr6 140622389 140622660 -48656894 - L2 LINE L2 -2479 835 593 1733 141 4 0 chr6 140622660 140622909 -48656645 + AluSx SINE Alu 1 250 -62 596 333 134 32 chr6 140622909 140623204 -48656350 - L2 LINE L2 -2721 593 211 304 275 67 17 chr6 140623471 140623591 -48655963 + MIR SINE MIR 96 221 -41 338 261 0 0 chr6 140624862 140624931 -48654623 + MIR SINE MIR 41 109 -153 2670 251 135 19 chr6 140624972 140625906 -48653648 - L2 LINE L2 -870 2444 1403 486 322 68 0 chr6 140625901 140626078 -48653476 + L2 LINE L2 104 292 -3022 * 454 305 62 26 chr6 140626080 140626306 -48653248 - L1MC/D LINE L1 -2271 5537 5304 2108 151 3 0 chr6 140626315 140626626 -48652928 - AluSx SINE Alu 0 312 1 232 321 132 0 chr6 140627397 140627503 -48652051 - L2 LINE L2 0 3313 3194 1717 271 56 11 chr6 140627900 140628421 -48651133 + L2 LINE L2 1789 2332 -982 836 248 52 42 chr6 140628470 140628776 -48650778 + MLT1I LTR MaLR 63 371 -38 712 220 12 40 chr6 140629295 140629468 -48650086 + L2 LINE L2 2327 2494 -820 248 195 49 138 chr6 140629469 140629592 -48649962 - L2 LINE L2 -55 3258 3147 3033 153 80 27 chr6 140629782 140630128 -48649426 + MER67B LTR ERV1 1 327 -334 2708 85 3 0 chr6 140630128 140630482 -48649072 + THE1A LTR MaLR 1 355 0 3033 153 80 27 chr6 140630482 140630763 -48648791 + MER67B LTR ERV1 327 661 0 3876 250 76 32 chr6 140630763 140632012 -48647542 - L2 LINE L2 -298 3015 1715 2232 209 54 105 chr6 140632101 140633256 -48646298 + MER52A LTR ERV1 660 1755 0 296 190 61 159 chr6 140633282 140633443 -48646111 - MIR SINE MIR -101 161 17 217 288 14 27 chr6 140633443 140633516 -48646038 - MER91 DNA MER1_type 0 190 119 3084 96 23 17 chr6 140634111 140634588 -48644966 - LTR15 LTR ERV1 0 493 14 196 267 208 36 chr6 140635246 140635395 -48644159 + MIR SINE MIR 28 151 -57 23 78 0 0 chr6 140635865 140635916 -48643638 + AT_rich Low_complexity Low_complexity 1 51 0 304 263 105 86 chr6 140636495 140636704 -48642850 - L1M2 LINE L1 -5885 964 752 27 0 0 0 chr6 140637257 140637284 -48642270 + AT_rich Low_complexity Low_complexity 1 27 0 1468 295 69 94 chr6 140637442 140638010 -48641544 - L2 LINE L2 -192 3080 2500 870 142 4 142 chr6 140638010 140638264 -48641290 + MER20 DNA MER1_type 1 219 0 1468 295 69 94 chr6 140638264 140639735 -48639819 - L2 LINE L2 -772 2500 1088 2140 97 0 0 chr6 140639735 140640014 -48639540 + AluSg SINE Alu 1 279 -31 1468 295 69 94 chr6 140640014 140640107 -48639447 - L2 LINE L2 -2184 1088 994 193 181 96 84 chr6 140640175 140640258 -48639296 - MIR3 SINE MIR -23 185 102 4260 159 35 64 chr6 140640591 140641509 -48638045 - MER21A LTR ERV1 -19 912 22 1214 94 0 6 chr6 140641509 140641689 -48637865 + (TA)n Simple_repeat Simple_repeat 2 180 0 655 176 113 45 chr6 140642124 140642345 -48637209 + MER106A DNA MER1_type 1 236 0 676 198 45 6 chr6 140643023 140643180 -48636374 + MER106B DNA MER1_type 897 1059 0 885 269 131 43 chr6 140643500 140644096 -48635458 - L1MC4a LINE L1 -1476 6332 5675 351 0 0 0 chr6 140644096 140644135 -48635419 + (CA)n Simple_repeat Simple_repeat 2 40 0 885 269 131 43 chr6 140644135 140644171 -48635383 - L1MC4a LINE L1 -2133 5675 5644 1655 152 37 4 chr6 140644861 140645131 -48634423 + AluJo SINE Alu 25 303 -9 28 48 0 0 chr6 140645415 140645457 -48634097 + AT_rich Low_complexity Low_complexity 1 42 0 326 294 201 0 chr6 140646487 140646671 -48632883 - L1MC5 LINE L1 -35 7926 7706 2370 108 0 0 chr6 140646685 140646990 -48632564 - AluSx SINE Alu -7 305 1 5104 174 26 7 chr6 140647376 140649367 -48630187 - L1PA16 LINE L1 -13 6153 4126 227 183 24 49 chr6 140649849 140649931 -48629623 + L1MC5 LINE L1 7831 7910 -51 548 239 80 4 chr6 140649967 140650205 -48629349 + L1M4 LINE L1 2563 2818 -3328 1709 158 32 48 chr6 140650882 140651061 -48628493 - AluJb SINE Alu -1 311 138 2416 68 3 13 chr6 140651061 140651369 -48628185 - AluSc SINE Alu -4 305 1 1709 158 32 48 chr6 140651369 140651505 -48628049 - AluJb SINE Alu -174 138 1 1810 157 7 11 chr6 140651961 140652248 -48627306 - AluJb SINE Alu -25 287 2 2244 112 0 10 chr6 140652424 140652737 -48626817 - AluSx SINE Alu -2 310 1 481 327 20 36 chr6 140653100 140653301 -48626253 + MIR3 SINE MIR 1 202 -6 664 292 42 13 chr6 140654578 140654814 -48624740 + MIR SINE MIR 10 252 -10 2256 100 7 0 chr6 140654943 140655234 -48624320 - AluSc SINE Alu -16 293 1 1217 143 17 0 chr6 140655607 140655782 -48623772 + AluJb SINE Alu 121 298 -14 180 111 0 0 chr6 140655803 140655830 -48623724 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2807 140 17 0 chr6 140656257 140656721 -48622833 - L1MC1 LINE L1 -5 6328 5857 23 0 0 0 chr6 140657636 140657659 -48621895 + AT_rich Low_complexity Low_complexity 1 23 0 286 302 58 0 chr6 140658214 140658300 -48621254 - L2 LINE L2 0 3313 3223 2351 81 0 7 chr6 140658830 140659125 -48620429 + AluSg SINE Alu 1 293 -17 462 51 17 0 chr6 140659234 140659293 -48620261 - 5S rRNA rRNA -61 60 1 1306 207 117 6 chr6 140660153 140660477 -48619077 + L2 LINE L2 2322 2681 -633 181 267 0 50 chr6 140660922 140660982 -48618572 + L2 LINE L2 3004 3060 -212 2193 89 0 4 chr6 140661663 140661967 -48617587 + AluSc SINE Alu 1 303 0 730 220 32 16 chr6 140662173 140662359 -48617195 - MER5A DNA MER1_type 0 189 1 778 204 6 23 chr6 140662364 140662540 -48617014 + MER5B DNA MER1_type 2 174 -4 225 0 0 0 chr6 140663866 140663891 -48615663 + (A)n Simple_repeat Simple_repeat 1 25 0 525 344 96 0 chr6 140664631 140664849 -48614705 - MIR SINE MIR -12 250 12 764 211 53 0 chr6 140664979 140665150 -48614404 + AluJo SINE Alu 114 293 -19 188 380 65 0 chr6 140666213 140666305 -48613249 - L2 LINE L2 -50 3222 3125 447 324 151 53 chr6 140666402 140667822 -48611732 - L2 LINE L2 -1 3271 1656 365 275 32 79 chr6 140668391 140668480 -48611074 - L2 LINE L2 -448 2866 2789 2167 85 41 0 chr6 140668480 140668773 -48610781 - AluSc SINE Alu -4 305 1 365 275 32 79 chr6 140668773 140668872 -48610682 - L2 LINE L2 -525 2789 2687 2280 102 0 3 chr6 140670325 140670620 -48608934 + AluSg SINE Alu 3 296 -14 844 190 22 27 chr6 140670620 140670804 -48608750 - AluJ SINE Alu -21 291 109 530 227 9 0 chr6 140670854 140670964 -48608590 - AluJ SINE Alu -201 111 1 308 340 38 9 chr6 140671952 140672112 -48607442 - MIR SINE MIR -67 141 13 294 352 127 44 chr6 140672669 140673030 -48606524 - L3 LINE CR1 -1186 391 1 314 279 235 20 chr6 140673648 140673899 -48605655 - L1ME4a LINE L1 -126 5995 5691 3629 78 20 49 chr6 140673960 140674514 -48605040 + L1PA11 LINE L1 5637 6174 0 202 118 29 0 chr6 140675933 140675967 -48603587 + T-rich Low_complexity Low_complexity 2 36 0 21 71 0 0 chr6 140676476 140676518 -48603036 + AT_rich Low_complexity Low_complexity 1 42 0 1700 181 0 4 chr6 140676886 140677167 -48602387 - AluJb SINE Alu -32 280 1 201 94 0 0 chr6 140678308 140678340 -48601214 + (T)n Simple_repeat Simple_repeat 1 32 0 631 285 77 16 chr6 140679742 140679983 -48599571 - MIR SINE MIR -6 256 6 246 250 67 58 chr6 140680235 140680339 -48599215 - L1MD3 LINE L1 -8 7987 7883 395 235 81 66 chr6 140680340 140680476 -48599078 - L1MC4 LINE L1 -101 7941 7804 4016 257 85 78 chr6 140680477 140682525 -48597029 - L1MC4a LINE L1 -98 7710 5640 1401 124 60 0 chr6 140682525 140682742 -48596812 - MER30 DNA MER1_type 0 230 1 4016 257 85 78 chr6 140682742 140683128 -48596426 - L1MC4a LINE L1 -2168 5640 5258 387 327 50 15 chr6 140683192 140683391 -48596163 - L1MC4a LINE L1 -1006 5140 4935 502 264 129 36 chr6 140684703 140684896 -48594658 + MIR SINE MIR 52 262 0 28 29 0 0 chr6 140686104 140686139 -48593415 + AT_rich Low_complexity Low_complexity 1 35 0 1182 136 0 45 chr6 140687895 140688093 -48591461 + Tigger2a DNA MER2_type 1 189 -245 716 147 18 0 chr6 140688112 140688221 -48591333 + Tigger2a DNA MER2_type 334 444 0 28 29 0 0 chr6 140688433 140688468 -48591086 + AT_rich Low_complexity Low_complexity 1 35 0 1080 239 139 46 chr6 140691564 140692062 -48587492 - L1MC4 LINE L1 -91 7951 7408 1802 192 0 13 chr6 140692612 140692919 -48586635 - AluJb SINE Alu -9 303 1 912 194 43 28 chr6 140692965 140693176 -48586378 + MER58C DNA MER1_type 1 214 -1 21 36 0 0 chr6 140693556 140693584 -48585970 + AT_rich Low_complexity Low_complexity 1 28 0 2073 128 0 0 chr6 140693588 140693907 -48585647 - AluSg SINE Alu 0 319 1 364 286 179 7 chr6 140694137 140694277 -48585277 - MIR3 SINE MIR -44 164 1 2518 236 128 36 chr6 140694455 140694594 -48584960 - L1MC4 LINE L1 -4 8038 7913 2068 96 35 11 chr6 140694594 140694876 -48584678 - AluY SINE Alu -22 289 1 2518 236 128 36 chr6 140694876 140695789 -48583765 - L1MC4 LINE L1 -129 7913 6889 326 370 42 27 chr6 140696819 140697081 -48582473 + L2 LINE L2 2826 3091 -181 309 164 0 0 chr6 140697441 140697508 -48582046 + L1MA7 LINE L1 6221 6287 -4 870 216 96 0 chr6 140697836 140698044 -48581510 - L1MB7 LINE L1 -19 6165 5938 2204 89 11 0 chr6 140698227 140698538 -48581016 - AluSq SINE Alu 0 314 1 302 213 0 0 chr6 140699087 140699148 -48580406 + AluJ/monomer SINE Alu 241 301 -1 2002 106 55 17 chr6 140701410 140701703 -48577851 - AluSg SINE Alu -4 306 3 267 262 0 0 chr6 140702138 140702199 -48577355 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 258 287 92 43 chr6 140702378 140702542 -48577012 + MARNA DNA Mariner 212 383 -203 2197 117 3 0 chr6 140702726 140703034 -48576520 + AluSg SINE Alu 1 309 -1 786 170 164 0 chr6 140703568 140703739 -48575815 - MLT1B LTR MaLR 0 390 192 623 189 0 24 chr6 140703760 140703887 -48575667 - FRAM SINE Alu -9 167 44 753 199 60 18 chr6 140703895 140704061 -48575493 - MLT1B LTR MaLR -217 173 1 190 307 171 23 chr6 140705540 140705628 -48573926 - MIR SINE MIR -57 151 51 2434 80 0 10 chr6 140705731 140706043 -48573511 - AluSc SINE Alu 0 309 1 2517 45 0 22 chr6 140706152 140706464 -48573090 - AluY SINE Alu -6 305 1 28 0 0 0 chr6 140706798 140706826 -48572728 + AT_rich Low_complexity Low_complexity 1 28 0 302 244 23 82 chr6 140708627 140708818 -48570736 - L1ME3A LINE L1 -50 6120 5934 407 322 89 49 chr6 140710941 140711447 -48568107 - L2 LINE L2 -366 2948 2423 755 314 36 84 chr6 140711472 140712137 -48567417 + L2 LINE L2 2557 3197 -75 432 331 29 7 chr6 140713502 140713641 -48565913 + MIR SINE MIR 10 151 -111 184 289 0 19 chr6 140714615 140714667 -48564887 + L2 LINE L2 2748 2798 -516 569 300 92 22 chr6 140716518 140716745 -48562809 + MIR SINE MIR 10 252 -10 187 292 62 52 chr6 140717702 140717798 -48561756 + MIR3 SINE MIR 3 99 -109 192 77 0 0 chr6 140717798 140717824 -48561730 + (A)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr6 140719159 140719182 -48560372 + AT_rich Low_complexity Low_complexity 1 23 0 7810 19 0 0 chr6 140722414 140723862 -48555692 - L1PA3 LINE L1 -3 6152 4705 1563 210 60 94 chr6 140723873 140724262 -48555292 + LTR40a LTR ERVL 3 371 -148 2357 100 0 7 chr6 140724262 140724561 -48554993 + AluSx SINE Alu 1 297 -15 1563 210 60 94 chr6 140724561 140724704 -48554850 + LTR40a LTR ERVL 371 517 -2 4371 252 73 52 chr6 140724708 140726286 -48553268 + HERVL40 LTR ERVL 1 1612 -3918 665 224 15 41 chr6 140726287 140726483 -48553071 + HERVL40 LTR ERVL 2525 2715 -2815 2606 155 123 15 chr6 140726483 140727192 -48552362 + LTR1B LTR ERV1 1 826 0 1098 222 76 28 chr6 140727192 140727480 -48552074 + HERVL40 LTR ERVL 2712 3013 -2517 3613 253 15 13 chr6 140727520 140728463 -48551091 + HERVL40 LTR ERVL 3008 3952 -1578 2289 119 0 3 chr6 140729405 140729708 -48549846 + AluSx SINE Alu 1 302 -10 1592 194 14 0 chr6 140729787 140730070 -48549484 + AluJo SINE Alu 9 295 -17 211 250 175 50 chr6 140730198 140730318 -48549236 - L2 LINE L2 0 3313 3179 215 320 86 35 chr6 140730574 140730771 -48548783 - L2 LINE L2 -249 3023 2817 21 0 0 0 chr6 140731857 140731878 -48547676 + AT_rich Low_complexity Low_complexity 1 21 0 297 267 106 138 chr6 140732475 140732644 -48546910 - L2 LINE L2 -78 3194 3021 2735 175 68 9 chr6 140732644 140733171 -48546383 + MER74A LTR ERVL 1 558 0 297 267 106 138 chr6 140733171 140733458 -48546096 - L2 LINE L2 -251 3021 2760 1822 182 0 0 chr6 140734326 140734623 -48544931 - AluJb SINE Alu -15 297 1 21 0 0 0 chr6 140734907 140734928 -48544626 + AT_rich Low_complexity Low_complexity 1 21 0 264 231 11 33 chr6 140735178 140735269 -48544285 - L1MC4a LINE L1 -1634 6174 6086 5130 42 10 0 chr6 140737320 140737943 -48541611 - L1PA7 LINE L1 0 6154 5526 1666 105 14 0 chr6 140737943 140738219 -48541335 + L1P LINE L1 3149 3428 -2718 877 150 0 0 chr6 140738409 140738542 -48541012 - FLAM_C SINE Alu 0 133 1 492 314 91 12 chr6 140738884 140739126 -48540428 - MIR SINE MIR -1 261 1 457 245 174 13 chr6 140740485 140740640 -48538914 + MER5A DNA MER1_type 4 183 -6 180 0 0 0 chr6 140740899 140740919 -48538635 + (T)n Simple_repeat Simple_repeat 1 20 0 1547 166 24 35 chr6 140741255 140741544 -48538010 - AluJb SINE Alu -26 286 1 362 289 228 7 chr6 140742924 140743073 -48536481 - MER5A DNA MER1_type 0 189 8 183 231 26 0 chr6 140743190 140743229 -48536325 - L3 LINE CR1 -1509 68 29 821 310 14 5 chr6 140744870 140745086 -48534468 + MIR SINE MIR 32 249 -13 261 119 0 0 chr6 140745164 140745206 -48534348 - 5S rRNA rRNA -79 42 1 1074 242 50 44 chr6 140745657 140746021 -48533533 - MLT1A2 LTR MaLR -8 366 1 21 0 0 0 chr6 140746279 140746300 -48533254 + AT_rich Low_complexity Low_complexity 1 21 0 1886 98 102 18 chr6 140746301 140746575 -48532979 + AluSg SINE Alu 1 297 -13 1538 256 103 61 chr6 140746585 140747271 -48532283 - L1ME3A LINE L1 -33 6137 5481 445 153 0 72 chr6 140747271 140747382 -48532172 - L1MB8 LINE L1 -5 6173 6071 1538 256 103 61 chr6 140747382 140748126 -48531428 - L1ME3A LINE L1 -689 5481 4637 206 62 31 0 chr6 140748805 140748837 -48530717 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 636 265 83 10 chr6 140750064 140750299 -48529255 - MIR SINE MIR -1 261 11 872 196 46 0 chr6 140751183 140751356 -48528198 - MER5A DNA MER1_type 0 189 9 184 261 138 0 chr6 140751353 140751418 -48528136 + MIR SINE MIR 43 116 -92 * 220 350 0 0 chr6 140751800 140751860 -48527694 + L2 LINE L2 3246 3305 -8 1794 160 33 28 chr6 140751957 140752320 -48527234 - MLT1A1 LTR MaLR 0 365 1 2673 90 16 0 chr6 140753117 140753484 -48526070 - THE1C LTR MaLR -2 373 1 28 0 0 0 chr6 140754318 140754346 -48525208 + AT_rich Low_complexity Low_complexity 1 28 0 2346 98 124 18 chr6 140754660 140755047 -48524507 + MSTA LTR MaLR 1 428 0 284 172 97 43 chr6 140755071 140755164 -48524390 - MLT1J1 LTR MaLR -5 441 344 332 249 27 32 chr6 140755171 140755352 -48524202 - MLT1J2 LTR MaLR -172 237 63 322 235 102 48 chr6 140755740 140755927 -48523627 + MLT1K LTR MaLR 378 574 -14 427 174 0 0 chr6 140756915 140756984 -48522570 - AluS SINE Alu -242 71 3 317 318 53 20 chr6 140758232 140758383 -48521171 - MIR SINE MIR 0 262 107 326 343 15 0 chr6 140758392 140758526 -48521028 - L1MEd LINE L1 -5559 560 425 550 227 8 15 chr6 140758579 140758711 -48520843 + MER63 DNA MER1_type 932 1062 0 960 135 6 18 chr6 140758935 140759098 -48520456 + L1PA16 LINE L1 6006 6166 0 5998 297 47 23 chr6 140759102 140759449 -48520105 + ERVL LTR ERVL 1368 1705 -3949 1246 189 87 40 chr6 140759449 140759747 -48519807 - AluJo SINE Alu 0 311 1 5998 297 47 23 chr6 140759747 140761586 -48517968 + ERVL LTR ERVL 1705 3709 -1945 325 211 28 42 chr6 140761644 140761786 -48517768 + (TATAA)n Simple_repeat Simple_repeat 3 142 0 999 210 0 0 chr6 140762253 140762467 -48517087 + L1MA9 LINE L1 5176 5389 -757 4594 189 66 12 chr6 140762858 140764107 -48515447 - L1MA9 LINE L1 -38 6274 4951 2785 149 32 6 chr6 140764110 140764605 -48514949 + L1MA9 LINE L1 5805 6312 0 931 203 199 0 chr6 140765078 140765334 -48514220 + L1MC1 LINE L1 6027 6333 0 191 0 103 0 chr6 140765349 140765378 -48514176 + A-rich Low_complexity Low_complexity 3 34 0 487 364 105 21 chr6 140765689 140766107 -48513447 + L2 LINE L2 2406 2858 -456 506 268 134 0 chr6 140767702 140767859 -48511695 + MER5B DNA MER1_type 1 178 0 609 310 8 59 chr6 140768418 140768474 -48511080 - MIR SINE MIR -13 249 192 2177 113 0 0 chr6 140768474 140768766 -48510788 - AluSg SINE Alu -14 296 5 609 310 8 59 chr6 140768766 140768964 -48510590 - MIR SINE MIR -70 192 8 228 299 108 100 chr6 140769318 140769689 -48509865 + L2 LINE L2 2894 3267 -5 2145 149 17 46 chr6 140770266 140770287 -48509267 + MER57A LTR ERV1 1 21 -382 1968 113 24 0 chr6 140770287 140770579 -48508975 + AluSx SINE Alu 1 299 -13 2145 149 17 46 chr6 140770579 140770972 -48508582 + MER57A LTR ERV1 21 403 0 2081 121 32 51 chr6 140771582 140771953 -48507601 - THE1B LTR MaLR 0 364 1 462 36 0 0 chr6 140772935 140772991 -48506563 + (TA)n Simple_repeat Simple_repeat 2 57 0 362 245 10 0 chr6 140773158 140773256 -48506298 + L1M4 LINE L1 4264 4362 -1784 216 0 0 0 chr6 140773451 140773475 -48506079 + (CA)n Simple_repeat Simple_repeat 2 25 0 233 326 78 76 chr6 140774912 140775432 -48504122 - L2 LINE L2 -2 3270 2748 220 291 23 47 chr6 140776021 140776107 -48503447 + L2 LINE L2 3187 3270 -2 206 302 0 16 chr6 140778295 140778358 -48501196 - L2 LINE L2 0 3272 3211 1596 142 0 0 chr6 140778888 140779134 -48500420 + AluSg SINE Alu 64 309 -1 180 245 82 0 chr6 140779619 140779668 -48499886 - MIR SINE MIR -115 147 95 296 197 0 16 chr6 140779814 140779875 -48499679 - MLT1K LTR MaLR -7 581 522 3239 134 26 28 chr6 140780010 140780538 -48499016 - MER1A DNA MER1_type 0 527 1 21 57 0 0 chr6 140780654 140780689 -48498865 + AT_rich Low_complexity Low_complexity 1 35 0 593 223 11 55 chr6 140780747 140780928 -48498626 - MIR SINE MIR -58 204 23 451 305 122 0 chr6 140782139 140782303 -48497251 - MIR SINE MIR 0 262 79 2384 213 38 59 chr6 140782736 140783342 -48496212 - MLT1E LTR MaLR 0 593 1 22 0 0 0 chr6 140784415 140784437 -48495117 + AT_rich Low_complexity Low_complexity 1 22 0 215 323 173 16 chr6 140785168 140785295 -48494259 + L2 LINE L2 3122 3268 -4 228 278 0 0 chr6 140785330 140785384 -48494170 + L2 LINE L2 3248 3301 -12 2249 102 7 3 chr6 140785508 140785803 -48493751 - AluSx SINE Alu -16 296 1 758 273 36 12 chr6 140785913 140786162 -48493392 + MIR SINE MIR 4 258 -4 344 135 0 54 chr6 140786241 140786315 -48493239 + Alu SINE Alu 231 300 0 392 293 204 0 chr6 140787822 140787969 -48491585 - MIR SINE MIR -44 218 42 2151 230 96 15 chr6 140788287 140788905 -48490649 - L1MC4 LINE L1 0 8042 7375 256 313 57 83 chr6 140791115 140791307 -48488247 + MIR SINE MIR 26 212 -50 237 241 36 48 chr6 140792599 140792682 -48486872 - MER94 DNA DNA -52 82 1 479 262 37 0 chr6 140792933 140793040 -48486514 - L2 LINE L2 -17 3255 3145 426 240 40 0 chr6 140793101 140793201 -48486353 + MER5A DNA MER1_type 9 112 -77 386 214 169 0 chr6 140793230 140793319 -48486235 - MER5A DNA MER1_type -77 112 9 610 216 32 112 chr6 140793328 140793606 -48485948 - MER112 DNA MER1_type 0 256 1 199 210 258 0 chr6 140793863 140793925 -48485629 + L2 LINE L2 3151 3228 -44 197 337 35 23 chr6 140794035 140794121 -48485433 + L2 LINE L2 3186 3272 0 765 262 23 0 chr6 140794641 140794813 -48484741 + MER5B DNA MER1_type 3 178 0 316 194 32 0 chr6 140795022 140795084 -48484470 + LTR50 LTR ERVL 8 71 -724 246 210 485 0 chr6 140795156 140795323 -48484231 + LTR50 LTR ERVL 223 470 -325 23 0 0 0 chr6 140795376 140795399 -48484155 + AT_rich Low_complexity Low_complexity 1 23 0 498 252 15 20 chr6 140797137 140797282 -48482272 + MIR SINE MIR 16 154 -69 589 275 22 14 chr6 140799085 140799307 -48480247 + L1ME LINE L1 5542 5765 -356 1948 136 3 3 chr6 140799350 140799636 -48479918 + AluSx SINE Alu 1 286 -26 490 316 16 21 chr6 140800867 140801054 -48478500 + MIR SINE MIR 48 233 -29 2696 76 25 0 chr6 140801278 140801633 -48477921 + THE1B LTR MaLR 1 364 0 3583 139 52 14 chr6 140801633 140802242 -48477312 + MER39B LTR ERV1 9 622 0 317 258 45 22 chr6 140802404 140802493 -48477061 + MIR SINE MIR 101 191 -71 24 67 0 0 chr6 140805481 140805526 -48474028 + AT_rich Low_complexity Low_complexity 1 45 0 13956 164 36 24 chr6 140805537 140809690 -48469864 + L1MA4 LINE L1 3505 7713 -6 28 0 0 0 chr6 140810608 140810636 -48468918 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr6 140810777 140810814 -48468740 + AT_rich Low_complexity Low_complexity 1 37 0 2136 132 0 0 chr6 140810814 140811103 -48468451 - AluSx SINE Alu -23 289 1 470 318 82 54 chr6 140811147 140811571 -48467983 - L1 LINE L1 -1796 4350 3915 537 335 42 0 chr6 140811582 140811913 -48467641 - L1 LINE L1 -2259 3887 3543 204 194 97 32 chr6 140812382 140812444 -48467110 + MIR SINE MIR 123 188 -74 21 0 0 0 chr6 140813855 140813876 -48465678 + AT_rich Low_complexity Low_complexity 1 21 0 403 350 67 0 chr6 140813948 140814171 -48465383 + MIR SINE MIR 20 257 -5 279 323 11 71 chr6 140814205 140814402 -48465152 + MIR SINE MIR 33 216 -46 22 0 0 0 chr6 140817235 140817257 -48462297 + AT_rich Low_complexity Low_complexity 1 22 0 329 242 161 8 chr6 140817827 140817951 -48461603 + MIR SINE MIR 49 191 -71 2232 104 3 3 chr6 140817953 140818252 -48461302 - AluSq SINE Alu -14 299 1 1855 48 0 4 chr6 140819263 140819494 -48460060 + L1PA7 LINE L1 5925 6154 0 461 303 42 7 chr6 140819933 140820075 -48459479 + MIR SINE MIR 23 169 -93 246 106 0 234 chr6 140820341 140820435 -48459119 + MIR SINE MIR 123 194 -68 312 269 188 25 chr6 140820881 140821041 -48458513 - MIR SINE MIR -64 198 13 424 261 101 50 chr6 140821104 140821303 -48458251 + MER20B DNA MER1_type 6 214 -569 2318 163 23 39 chr6 140821411 140821846 -48457708 + MSTC LTR MaLR 1 428 0 241 342 13 0 chr6 140821932 140822011 -48457543 + L2 LINE L2 3226 3305 -8 33 0 0 0 chr6 140823385 140823418 -48456136 + AT_rich Low_complexity Low_complexity 1 33 0 627 274 103 46 chr6 140823434 140823850 -48455704 - HAL1 LINE L1 -1544 963 524 341 269 36 16 chr6 140823858 140824074 -48455480 + MLT1G1 LTR MaLR 12 246 -349 355 323 147 31 chr6 140824364 140824779 -48454775 - HAL1 LINE L1 -2043 464 2 23 0 0 0 chr6 140824899 140824922 -48454632 + AT_rich Low_complexity Low_complexity 1 23 0 416 331 8 0 chr6 140824970 140825091 -48454463 - L2 LINE L2 -4 3309 3188 381 278 60 0 chr6 140825380 140825513 -48454041 + Charlie8 DNA MER1_type 125 265 -2152 578 273 57 159 chr6 140826464 140826954 -48452600 + L3 LINE CR1 965 1369 -208 2107 28 0 0 chr6 140826954 140827202 -48452352 - L1PA4 LINE L1 -7 6148 5901 578 273 57 159 chr6 140827202 140827382 -48452172 + L3 LINE CR1 1369 1566 -11 526 245 73 20 chr6 140828453 140828604 -48450950 + MIR3 SINE MIR 36 194 -14 624 266 76 5 chr6 140828651 140828835 -48450719 + MIR SINE MIR 66 262 0 990 188 22 45 chr6 140828960 140829183 -48450371 - AluJb SINE Alu -8 304 87 187 397 0 0 chr6 140830856 140830929 -48448625 - MIR SINE MIR -104 104 32 1120 65 5 27 chr6 140831265 140831343 -48448211 + (TTTC)n Simple_repeat Simple_repeat 1 256 0 1120 65 5 27 chr6 140831343 140831527 -48448027 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 186 316 0 18 chr6 140832548 140832605 -48446949 + MIR3 SINE MIR 120 175 -33 333 47 0 0 chr6 140833883 140833926 -48445628 + (TG)n Simple_repeat Simple_repeat 2 44 0 2132 175 78 0 chr6 140834588 140834983 -48444571 - MSTB LTR MaLR 0 426 1 4088 168 25 30 chr6 140834983 140835285 -48444269 - MSTB-int LTR MaLR 0 1651 1349 2289 81 0 20 chr6 140835285 140835583 -48443971 - AluY SINE Alu -19 292 1 4088 168 25 30 chr6 140835583 140836053 -48443501 - MSTB-int LTR MaLR -302 1349 883 2227 154 95 0 chr6 140836087 140836476 -48443078 - MSTB LTR MaLR 0 426 1 364 242 47 84 chr6 140837401 140837591 -48441963 - L1ME3A LINE L1 0 6170 5988 792 266 45 33 chr6 140837756 140838091 -48441463 - L1MC5 LINE L1 -430 7531 7193 487 235 68 39 chr6 140838612 140838824 -48440730 + MLT1J1 LTR MaLR 4 233 -217 682 244 6 30 chr6 140838851 140839015 -48440539 - MER58A DNA MER1_type -37 187 28 382 252 61 38 chr6 140839025 140839156 -48440398 + MLT1J2 LTR MaLR 258 391 -59 766 209 158 27 chr6 140839163 140839422 -48440132 - MLT1C LTR MaLR 0 467 175 733 220 9 52 chr6 140839576 140839804 -48439750 - MLT1C LTR MaLR -172 218 3 27 0 0 0 chr6 140840622 140840649 -48438905 + AT_rich Low_complexity Low_complexity 1 27 0 13273 90 20 2 chr6 140840649 140843307 -48436247 - L1PA7 LINE L1 -11 6458 3770 15386 118 45 30 chr6 140843313 140844554 -48435000 - L1PA7 LINE L1 -2777 3684 2463 2115 114 3 7 chr6 140844554 140844851 -48434703 + AluSg SINE Alu 1 296 -14 15386 118 45 30 chr6 140844851 140847131 -48432423 - L1PA7 LINE L1 -3998 2463 1 2212 106 0 0 chr6 140848082 140848374 -48431180 - AluSg SINE Alu -18 292 1 611 288 88 9 chr6 140848580 140848806 -48430748 + MER102b DNA MER1_type 88 331 -10 243 255 234 14 chr6 140850147 140850292 -48429262 + MER5A DNA MER1_type 11 187 -2 405 209 158 36 chr6 140850437 140850576 -48428978 + MER5B DNA MER1_type 22 177 -1 2116 114 3 10 chr6 140851277 140851576 -48427978 - AluSq SINE Alu -16 297 1 444 309 9 0 chr6 140852611 140852721 -48426833 - L2 LINE L2 -11 3302 3192 214 162 0 0 chr6 140853506 140853543 -48426011 + MER5C DNA MER1_type 288 324 0 233 235 39 0 chr6 140853573 140853624 -48425930 + MER5A DNA MER1_type 47 99 -90 1683 256 58 42 chr6 140856885 140857591 -48421963 - HAL1 LINE L1 -17 2490 1774 780 268 130 11 chr6 140857776 140858052 -48421502 + LTR16A LTR ERVL 128 436 -14 845 287 71 92 chr6 140858271 140858957 -48420597 - HAL1 LINE L1 -1810 697 26 492 252 71 13 chr6 140858988 140859143 -48420411 + L2 LINE L2 1945 2108 -1206 23 0 0 0 chr6 140859794 140859817 -48419737 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr6 140860493 140860536 -48419018 + AT_rich Low_complexity Low_complexity 1 43 0 286 297 29 43 chr6 140860881 140861019 -48418535 - L3 LINE CR1 -5 1572 1437 230 329 65 32 chr6 140863397 140863552 -48416002 + MIR3 SINE MIR 2 161 -47 250 318 51 49 chr6 140863598 140863796 -48415758 - MIR3 SINE MIR -51 211 14 281 289 183 0 chr6 140864041 140864145 -48415409 - MIR SINE MIR -105 157 35 2128 127 53 19 chr6 140865236 140865597 -48413957 - THE1C LTR MaLR -2 373 1 3631 245 44 41 chr6 140866470 140868090 -48411464 + L1ME LINE L1 3928 5547 -615 454 266 96 35 chr6 140868664 140868893 -48410661 + MIR SINE MIR 7 249 -13 12210 173 40 23 chr6 140869460 140869776 -48409778 - L1MA4 LINE L1 -6 6294 5985 1758 122 44 70 chr6 140869776 140870161 -48409393 + THE1C LTR MaLR 1 375 0 12210 173 40 23 chr6 140870161 140873048 -48406506 - L1MA4 LINE L1 -315 5985 3004 2188 75 44 3 chr6 140873048 140873341 -48406213 - AluY SINE Alu -6 305 1 12210 173 40 23 chr6 140873341 140873912 -48405642 - L1MA4 LINE L1 -3296 3004 2444 231 317 159 21 chr6 140874096 140874241 -48405313 + L3b LINE CR1 1407 1571 -12 1759 179 0 4 chr6 140874390 140874670 -48404884 + AluJo SINE Alu 1 279 -33 1427 267 54 39 chr6 140875156 140875671 -48403883 + MLT1L LTR MaLR 39 561 -54 727 268 54 61 chr6 140875671 140875951 -48403603 + Charlie2 DNA MER1_type 1 278 -2584 1050 236 98 21 chr6 140875971 140876535 -48403019 + Charlie2 DNA MER1_type 2213 2819 -43 385 250 46 74 chr6 140876750 140876966 -48402588 - HAL1 LINE L1 -2295 212 3 289 227 31 31 chr6 140876989 140877086 -48402468 - L1ME4a LINE L1 -238 5883 5787 669 303 26 17 chr6 140879340 140879571 -48399983 + HERV16 LTR ERVL 14 246 -4750 853 297 25 18 chr6 140879593 140879876 -48399678 + HERV16 LTR ERVL 826 1110 -3886 2329 66 3 3 chr6 140880124 140880410 -48399144 - AluY SINE Alu -25 286 1 246 330 10 10 chr6 140881217 140881340 -48398214 + CT-rich Low_complexity Low_complexity 2 203 0 315 288 0 0 chr6 140881691 140881757 -48397797 + L2 LINE L2 3201 3266 -6 22 56 0 0 chr6 140882226 140882262 -48397292 + AT_rich Low_complexity Low_complexity 1 36 0 793 207 6 24 chr6 140882681 140882850 -48396704 + MER45A DNA AcHobo 10 175 -3 469 239 120 7 chr6 140883194 140883336 -48396218 + L1ME4a LINE L1 5671 5828 -293 333 0 0 0 chr6 140883477 140883514 -48396040 + (TG)n Simple_repeat Simple_repeat 2 38 0 2308 102 0 3 chr6 140884780 140885084 -48394470 + AluSg SINE Alu 1 303 -7 447 68 0 0 chr6 140885456 140885515 -48394039 + (CA)n Simple_repeat Simple_repeat 2 60 0 539 264 9 28 chr6 140885819 140886009 -48393545 - MER5A DNA MER1_type 0 189 4 255 250 16 0 chr6 140887083 140887147 -48392407 + MLT1K LTR MaLR 514 578 -10 234 329 130 6 chr6 140888213 140888374 -48391180 - MIR SINE MIR -57 205 25 2345 61 0 29 chr6 140888996 140889308 -48390246 + AluY SINE Alu 1 303 -8 2418 220 99 82 chr6 140889539 140890152 -48389402 + MLT1E1 LTR MaLR 1 654 0 393 318 184 4 chr6 140890153 140890420 -48389134 + L2 LINE L2 2199 2513 -801 299 340 0 0 chr6 140890819 140890922 -48388632 + LTR67 LTR ERVL 408 510 -47 389 268 76 67 chr6 140890950 140891174 -48388380 + L2 LINE L2 2539 2764 -550 24 0 0 0 chr6 140891174 140891198 -48388356 + AT_rich Low_complexity Low_complexity 1 24 0 5159 118 32 1 chr6 140891198 140892051 -48387503 - L1MA3 LINE L1 0 6305 5427 1410 63 24 5 chr6 140892153 140892359 -48387195 + L1P LINE L1 4994 5203 -943 * 14463 149 32 43 chr6 140892356 140899539 -48380015 - L1M1 LINE L1 -494 7230 13 272 326 0 0 chr6 140900040 140900138 -48379416 - MIR SINE MIR -17 245 148 696 279 116 52 chr6 140900148 140900510 -48379044 - MLT1I LTR MaLR -6 403 19 204 346 158 0 chr6 140900533 140900660 -48378894 - MIR SINE MIR -110 152 6 5712 162 20 40 chr6 140900999 140902907 -48376647 - L1PA15 LINE L1 0 6165 4315 4617 242 30 26 chr6 140902902 140903383 -48376171 - L1PA13 LINE L1 -3828 2969 2492 * 2307 92 0 0 chr6 140903383 140903711 -48375843 + AluY SINE Alu 1 328 0 4617 242 30 26 chr6 140903711 140905813 -48373741 - L1PA13 LINE L1 -4305 2492 1 1972 134 13 7 chr6 140905929 140906234 -48373320 - AluSx SINE Alu -5 307 1 2118 118 60 17 chr6 140907030 140907379 -48372175 + THE1B LTR MaLR 1 364 0 2685 258 92 21 chr6 140909120 140910279 -48369275 - Charlie7 DNA MER1_type -303 2309 1069 2718 158 15 11 chr6 140910279 140910734 -48368820 - LTR32 LTR ERVL 0 471 15 228 234 78 0 chr6 140910733 140910797 -48368757 - Charlie7 DNA MER1_type -1538 1074 1006 * 978 264 108 56 chr6 140910797 140911457 -48368097 - Charlie7 DNA MER1_type -1569 1043 350 1216 117 34 24 chr6 140911503 140911709 -48367845 + Tigger2 DNA MER2_type 1 208 -2510 815 208 7 13 chr6 140911706 140911860 -48367694 + Tigger2 DNA MER2_type 2564 2716 -2 * 280 358 108 21 chr6 140911860 140912099 -48367455 - Charlie7 DNA MER1_type -2313 299 40 225 108 0 0 chr6 140912386 140912423 -48367131 + (TG)n Simple_repeat Simple_repeat 2 38 0 197 36 36 0 chr6 140913412 140913440 -48366114 + MIR SINE MIR 112 140 -122 964 256 140 27 chr6 140913462 140913904 -48365650 - MLT1J LTR MaLR -15 496 5 685 194 75 53 chr6 140913906 140914133 -48365421 - ORSL DNA AcHobo -41 234 3 40 49 0 0 chr6 140914597 140914658 -48364896 + AT_rich Low_complexity Low_complexity 1 61 0 24 32 0 0 chr6 140914668 140914699 -48364855 + AT_rich Low_complexity Low_complexity 1 31 0 25 83 0 0 chr6 140914891 140914951 -48364603 + AT_rich Low_complexity Low_complexity 1 60 0 6301 95 8 1 chr6 140915240 140916124 -48363430 + L1PA11 LINE L1 5285 6174 0 21 0 0 0 chr6 140916868 140916889 -48362665 + AT_rich Low_complexity Low_complexity 1 21 0 300 27 0 0 chr6 140917303 140917340 -48362214 + (GA)n Simple_repeat Simple_repeat 2 38 0 1769 166 0 3 chr6 140917641 140917945 -48361609 + AluJb SINE Alu 1 303 0 27935 53 6 1 chr6 140918056 140921577 -48357977 - L1PA4 LINE L1 -2596 3550 11 15054 38 5 1 chr6 140921584 140924183 -48355371 + L1PA4 LINE L1 3536 6149 -6 328 330 9 36 chr6 140925050 140925162 -48354392 + MIR SINE MIR 12 120 -142 848 161 0 29 chr6 140926059 140926196 -48353358 + FLAM_C SINE Alu 1 133 0 953 163 168 35 chr6 140926235 140926437 -48353117 + AluJb SINE Alu 1 229 -83 283 221 59 29 chr6 140926979 140927047 -48352507 + HAL1 LINE L1 4 73 -2434 297 128 0 0 chr6 140927570 140927617 -48351937 + (CA)n Simple_repeat Simple_repeat 2 48 0 450 0 0 0 chr6 140927685 140927735 -48351819 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 333 129 0 0 chr6 140927752 140927822 -48351732 + (TA)n Simple_repeat Simple_repeat 1 70 0 394 289 25 25 chr6 140927830 140928107 -48351447 + HAL1 LINE L1 1029 1305 -1202 413 280 22 36 chr6 140928301 140928526 -48351028 + HAL1 LINE L1 1558 1779 -728 494 232 0 9 chr6 140928529 140928641 -48350913 + L1MC4 LINE L1 7788 7898 -144 22 56 0 0 chr6 140928682 140928718 -48350836 + AT_rich Low_complexity Low_complexity 1 36 0 400 243 167 61 chr6 140928756 140929019 -48350535 + L2 LINE L2 3022 3312 -1 229 325 113 0 chr6 140929371 140929451 -48350103 + HAL1 LINE L1 1825 1913 -594 323 300 120 7 chr6 140929798 140929948 -48349606 + HAL1 LINE L1 2264 2430 -77 310 302 73 52 chr6 140930387 140930635 -48348919 - L2 LINE L2 -1317 1997 1745 2402 76 0 16 chr6 140931257 140931572 -48347982 - AluSg SINE Alu 0 310 1 1761 163 35 14 chr6 140931592 140931960 -48347594 - L1MA8 LINE L1 -10 6281 5906 204 273 18 0 chr6 140932191 140932246 -48347308 + L2 LINE L2 3256 3311 -2 1628 242 70 61 chr6 140932276 140932846 -48346708 - MLT1G LTR MaLR -9 581 7 371 162 88 0 chr6 140933398 140933466 -48346088 + AluS SINE Alu 1 74 -227 * 2958 148 17 21 chr6 140933441 140933960 -48345594 - Tigger3b DNA MER2_type -713 518 2 387 333 58 48 chr6 140933979 140934517 -48345037 - HERVL LTR ERVL -3829 1825 1283 362 208 26 26 chr6 140934655 140934732 -48344822 - L2 LINE L2 -8 3305 3229 28 0 0 0 chr6 140935236 140935264 -48344290 + AT_rich Low_complexity Low_complexity 1 28 0 1942 255 48 10 chr6 140936108 140936591 -48342963 - MLT1F LTR MaLR 0 542 42 581 266 47 117 chr6 140936613 140936955 -48342599 - MLT1F-int LTR MaLR -25 1346 1029 2003 144 0 0 chr6 140937095 140937429 -48342125 - AluSx SINE Alu 0 334 1 2012 182 22 10 chr6 140937508 140937915 -48341639 - L1 LINE L1 -2260 4948 4537 1014 194 107 18 chr6 140938734 140939070 -48340484 - L1 LINE L1 -2602 4606 4241 3451 88 11 39 chr6 140939081 140939456 -48340098 - L1PA13 LINE L1 -18 6145 5788 2156 127 0 0 chr6 140939456 140939740 -48339814 - AluSx SINE Alu -28 284 1 3451 88 11 39 chr6 140939740 140939901 -48339653 - L1PA13 LINE L1 -375 5788 5624 4699 240 42 27 chr6 140939903 140942106 -48337448 - L1 LINE L1 -3588 3620 1675 933 306 55 56 chr6 140942589 140943229 -48336325 - L1 LINE L1 -6365 844 1 244 218 77 51 chr6 140943328 140943406 -48336148 - HAL1 LINE L1 -2424 83 4 22 35 0 0 chr6 140944483 140944512 -48335042 + AT_rich Low_complexity Low_complexity 1 29 0 388 238 83 71 chr6 140944624 140944740 -48334814 - MIR SINE MIR -62 200 80 1219 192 39 147 chr6 140944740 140945204 -48334350 + MLT2D LTR ERVL 1 414 0 388 238 83 71 chr6 140945204 140945255 -48334299 - MIR SINE MIR -182 80 31 357 317 152 7 chr6 140946314 140946459 -48333095 - MIR3 SINE MIR -28 180 15 468 278 20 26 chr6 140947366 140947517 -48332037 + MIR SINE MIR 56 205 -57 22 0 0 0 chr6 140948997 140949019 -48330535 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 140949148 140949174 -48330380 + AT_rich Low_complexity Low_complexity 1 26 0 2781 3 0 10 chr6 140949223 140949532 -48330022 + AluYa5 SINE Alu 1 306 -5 385 279 49 54 chr6 140949540 140949744 -48329810 + L1MC4a LINE L1 2158 2360 -3786 1172 238 91 29 chr6 140949745 140950657 -48328897 + L1MC4a LINE L1 5589 6599 -1209 660 256 0 58 chr6 140950651 140950893 -48328661 + L1MC4 LINE L1 7621 7848 -194 * 324 216 274 0 chr6 140950902 140951004 -48328550 + L1MC4 LINE L1 7913 8042 0 2202 135 0 0 chr6 140951325 140951636 -48327918 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr6 140951727 140951748 -48327806 + AT_rich Low_complexity Low_complexity 1 21 0 189 147 0 0 chr6 140952699 140952733 -48326821 + (TG)n Simple_repeat Simple_repeat 2 35 0 520 245 141 21 chr6 140953237 140953429 -48326125 - MIR SINE MIR -26 236 22 24 32 0 0 chr6 140954324 140954355 -48325199 + AT_rich Low_complexity Low_complexity 1 31 0 29 47 0 0 chr6 140954418 140954461 -48325093 + AT_rich Low_complexity Low_complexity 1 43 0 827 235 47 67 chr6 140954685 140955068 -48324486 - LTR41 LTR ERVL -5 768 340 934 221 40 5 chr6 140955083 140955282 -48324272 - LTR41 LTR ERVL -567 206 1 763 252 68 26 chr6 140955436 140955670 -48323884 + MIR SINE MIR 5 248 -14 672 55 66 0 chr6 140957444 140957535 -48322019 - L1PA16 LINE L1 -9 6157 6061 2224 102 3 10 chr6 140957578 140957883 -48321671 + AluSx SINE Alu 1 303 -9 277 417 102 4 chr6 140961389 140961624 -48317930 - L2 LINE L2 -14 3258 3001 11253 84 8 4 chr6 140961990 140962004 -48317550 + L1P LINE L1 3068 3080 -3066 6882 59 8 6 chr6 140962004 140963404 -48316150 - L1PA7 LINE L1 -11 6143 4743 11253 84 8 4 chr6 140963404 140964985 -48314569 + L1P LINE L1 3080 4670 -1476 301 292 13 39 chr6 140965715 140965869 -48313685 - MER103 DNA DNA -3 163 14 269 204 0 19 chr6 140966101 140966155 -48313399 + L2 LINE L2 3261 3313 0 794 331 108 55 chr6 140966970 140967481 -48312073 + L2 LINE L2 1179 1758 -1556 204 40 0 0 chr6 140967481 140967506 -48312048 + (GGA)n Simple_repeat Simple_repeat 1 25 0 794 331 108 55 chr6 140967506 140967871 -48311683 + L2 LINE L2 1758 2102 -1212 1198 259 32 32 chr6 140968646 140969016 -48310538 - MLT1A2 LTR MaLR -4 370 1 788 295 90 63 chr6 140969016 140969494 -48310060 + L2 LINE L2 2316 2806 -508 210 71 0 0 chr6 140969520 140969548 -48310006 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 2030 116 0 3 chr6 140969548 140969832 -48309722 - AluSx SINE Alu -29 283 1 284 268 146 34 chr6 140970126 140970331 -48309223 - L2 LINE L2 -858 2456 2229 309 296 126 47 chr6 140970424 140970725 -48308829 - L2 LINE L2 -1291 2023 1699 406 128 37 49 chr6 140972121 140972285 -48307269 + (TATAA)n Simple_repeat Simple_repeat 3 164 0 222 111 79 0 chr6 140972303 140972366 -48307188 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 1025 180 14 36 chr6 140972556 140972778 -48306776 + AluJo SINE Alu 87 303 -9 1512 167 46 18 chr6 140972925 140973207 -48306347 - AluJo SINE Alu -22 290 1 343 311 7 40 chr6 140973260 140973411 -48306143 + Zaphod DNA AcHobo 10 155 -3876 4823 214 50 35 chr6 140973464 140974736 -48304818 + Charlie1 DNA MER1_type 586 1877 -884 2249 185 69 11 chr6 140974773 140975293 -48304261 + Charlie1 DNA MER1_type 2080 2629 -132 1722 242 42 70 chr6 140975294 140975865 -48303689 + Zaphod DNA AcHobo 98 652 -3379 1582 229 209 5 chr6 140975873 140976496 -48303058 + Zaphod DNA AcHobo 3282 4031 0 914 288 79 48 chr6 140977921 140978425 -48301129 - MLT1H1 LTR MaLR -8 547 28 1484 237 28 11 chr6 140978740 140979099 -48300455 - MLT1A1 LTR MaLR 0 365 1 817 229 0 12 chr6 140979190 140979356 -48300198 - FAM SINE Alu -8 167 4 321 236 18 36 chr6 140980053 140980163 -48299391 + CT-rich Low_complexity Low_complexity 1 108 0 302 314 172 36 chr6 140980227 140980652 -48298902 - L2 LINE L2 -78 3235 2739 24 0 0 0 chr6 140980842 140980866 -48298688 + AT_rich Low_complexity Low_complexity 1 24 0 180 349 161 0 chr6 140982195 140982344 -48297210 + L2 LINE L2 1843 2015 -1299 * 322 281 237 0 chr6 140982329 140982443 -48297111 + MIR SINE MIR 100 240 -22 284 351 27 0 chr6 140982540 140982651 -48296903 - LTR16C LTR ERVL -53 438 325 490 262 66 49 chr6 140982971 140983154 -48296400 - L1ME1 LINE L1 -9 6157 5972 3762 227 48 72 chr6 140983159 140984082 -48295472 - L1ME1 LINE L1 -744 5402 4458 1766 123 68 46 chr6 140984082 140984449 -48295105 - THE1C LTR MaLR 0 375 1 3762 227 48 72 chr6 140984449 140984737 -48294817 - L1ME1 LINE L1 -1688 4458 4232 2094 81 0 7 chr6 140984737 140985045 -48294509 + AluSq SINE Alu 1 306 0 3762 227 48 72 chr6 140985045 140985349 -48294205 - L1ME1 LINE L1 -1914 4232 3922 784 290 41 16 chr6 140985489 140985855 -48293699 - L1MC4a LINE L1 -1759 6049 5675 2235 117 0 0 chr6 140986661 140986968 -48292586 + AluSc SINE Alu 1 307 -2 23 54 0 0 chr6 140987489 140987526 -48292028 + AT_rich Low_complexity Low_complexity 1 37 0 722 309 34 17 chr6 140987606 140987842 -48291712 + MIR SINE MIR 11 250 -12 249 300 0 0 chr6 140987926 140987996 -48291558 + (TA)n Simple_repeat Simple_repeat 1 70 0 2099 127 0 0 chr6 140989370 140989677 -48289877 + AluSx SINE Alu 1 307 -5 32 26 0 0 chr6 140990163 140990202 -48289352 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr6 140990363 140990403 -48289151 + AT_rich Low_complexity Low_complexity 1 40 0 332 367 7 27 chr6 140990836 140990986 -48288568 + L2 LINE L2 2914 3060 -212 722 87 0 0 chr6 140991468 140991572 -48287982 - L1PA11 LINE L1 -2 6172 6069 406 380 18 13 chr6 140992466 140992690 -48286864 - MLT1K LTR MaLR -219 369 145 3002 125 6 20 chr6 140993899 140994702 -48284852 + MER4D LTR ERV1 1 779 0 29 0 0 0 chr6 140995136 140995165 -48284389 + AT_rich Low_complexity Low_complexity 1 29 0 484 218 177 76 chr6 140996176 140996493 -48283061 - MLT1H LTR MaLR -129 420 72 361 260 75 1 chr6 140996553 140996684 -48282870 - L1M1 LINE L1 -329 5792 5667 264 300 126 36 chr6 140996987 140997234 -48282320 - L1MC4a LINE L1 -1894 5897 5629 711 295 76 61 chr6 140997455 140998075 -48281479 - L1MC4a LINE L1 -1468 4661 4019 2800 10 0 0 chr6 140998075 140998386 -48281168 + AluYa5 SINE Alu 1 311 0 711 295 76 61 chr6 140998386 140998766 -48280788 - L1MC4a LINE L1 -2110 4019 3646 542 286 32 40 chr6 140998900 140999152 -48280402 - L1MC4a LINE L1 -4880 1239 990 658 250 13 0 chr6 140999208 140999364 -48280190 + L1MD3 LINE L1 7825 7982 -13 31 44 0 0 chr6 140999524 140999569 -48279985 + AT_rich Low_complexity Low_complexity 1 45 0 516 239 87 22 chr6 140999760 140999986 -48279568 - L1MEc LINE L1 -4521 3092 2816 5066 171 14 33 chr6 141000067 141001579 -48277975 - L1MA6 LINE L1 -5 6295 4802 738 207 64 35 chr6 141002302 141002505 -48277049 - MER3 DNA MER1_type 0 209 1 927 258 19 0 chr6 141002533 141002746 -48276808 + MLT1D LTR MaLR 1 217 -288 2391 128 67 33 chr6 141002747 141003177 -48276377 + MER65A LTR ERV1 1 445 0 3932 214 48 71 chr6 141003262 141004065 -48275489 + MER65A-int LTR ERV1 83 903 -3968 1973 115 0 7 chr6 141004065 141004344 -48275210 + AluSc SINE Alu 1 277 -32 257 0 0 29 chr6 141004346 141004380 -48275174 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3932 214 48 71 chr6 141004380 141004833 -48274721 + MER65A-int LTR ERV1 904 1313 -3558 748 205 77 48 chr6 141004847 141005352 -48274202 + MER65A-int LTR ERV1 1720 3482 -3116 258 216 0 0 chr6 141005495 141005546 -48274008 + MER65A-int LTR ERV1 2429 2479 -4279 796 171 23 97 chr6 141005568 141005826 -48273728 + MER65A-int LTR ERV1 3492 3730 -2868 1256 185 96 105 chr6 141005905 141006836 -48272718 + MER65A-int LTR ERV1 3730 4692 -1639 44256 36 3 1 chr6 141006836 141012980 -48266574 + L1PA3 LINE L1 2 6152 -3 1419 205 100 18 chr6 141012989 141013389 -48266165 + MER65A-int LTR ERV1 3380 3812 -1124 1806 267 60 2 chr6 141013547 141013981 -48265573 + MER65A-int LTR ERV1 3604 4062 -809 * 1846 216 31 38 chr6 141013976 141014454 -48265100 + MER65A-int LTR ERV1 4397 4871 0 1715 126 66 148 chr6 141014454 141014513 -48265041 + MER65A LTR ERV1 1 63 -382 1598 191 7 7 chr6 141014513 141014821 -48264733 + AluJo SINE Alu 2 309 0 1715 126 66 148 chr6 141014821 141015088 -48264466 + MER65A LTR ERV1 63 278 -167 1691 148 17 28 chr6 141015088 141015378 -48264176 + AluSx SINE Alu 1 287 -25 1715 126 66 148 chr6 141015378 141015534 -48264020 + MER65A LTR ERV1 278 445 0 1181 202 124 0 chr6 141015534 141015792 -48263762 + MLT1D LTR MaLR 216 505 0 502 252 17 0 chr6 141016022 141016141 -48263413 + MER63 DNA MER1_type 662 782 -278 340 274 65 65 chr6 141016222 141016312 -48263242 - L2 LINE L2 -256 3057 2965 2128 129 3 0 chr6 141016312 141016615 -48262939 - AluSx SINE Alu -8 304 1 340 274 65 65 chr6 141016615 141016677 -48262877 - L2 LINE L2 -347 2966 2905 1944 182 3 24 chr6 141016712 141016766 -48262788 - MLT1A1 LTR MaLR 0 365 311 2289 155 35 30 chr6 141016766 141017192 -48262362 - MSTC LTR MaLR 0 428 1 1944 182 3 24 chr6 141017192 141017506 -48262048 - MLT1A1 LTR MaLR -54 311 5 4121 284 131 28 chr6 141017610 141019577 -48259977 - L2 LINE L2 -503 2811 642 658 238 50 11 chr6 141019585 141019766 -48259788 + MER5A DNA MER1_type 1 188 -1 252 233 17 0 chr6 141021075 141021135 -48258419 + CT-rich Low_complexity Low_complexity 2 62 0 257 310 133 18 chr6 141022790 141022903 -48256651 + L2 LINE L2 2933 3058 -214 1992 157 64 37 chr6 141023634 141024169 -48255385 - MLT2A2 LTR ERVL -11 543 1 408 260 89 32 chr6 141024307 141024430 -48255124 - L2 LINE L2 -5 3267 3138 269 170 21 0 chr6 141025212 141025259 -48254295 + L1MEd LINE L1 563 610 -5509 501 191 57 0 chr6 141025684 141025789 -48253765 - L1MD3 LINE L1 -13 7982 7872 23 0 0 0 chr6 141025834 141025857 -48253697 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr6 141025977 141026008 -48253546 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr6 141026091 141026120 -48253434 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 141026369 141026390 -48253164 + AT_rich Low_complexity Low_complexity 1 21 0 486 103 64 0 chr6 141026885 141026963 -48252591 - THE1C LTR MaLR 0 375 293 * 642 134 142 22 chr6 141026949 141027083 -48252471 - THE1C LTR MaLR -225 150 1 647 100 0 0 chr6 141027114 141027204 -48252350 + AluSp/q SINE Alu 212 301 -12 344 220 20 50 chr6 141027522 141027622 -48251932 - L1MD3 LINE L1 -30 7965 7869 2944 202 36 40 chr6 141029406 141030086 -48249468 - L1MD2 LINE L1 -13 6346 5665 716 193 17 91 chr6 141030086 141030262 -48249292 - FRAM SINE Alu -2 164 2 2944 202 36 40 chr6 141030262 141030469 -48249085 - L1MD2 LINE L1 -694 5665 5408 1660 205 28 11 chr6 141030469 141030825 -48248729 - MLT1A1 LTR MaLR 0 365 4 2944 202 36 40 chr6 141030825 141030874 -48248680 - L1MD2 LINE L1 -951 5408 5360 219 36 0 0 chr6 141031383 141031411 -48248143 + (TG)n Simple_repeat Simple_repeat 2 29 0 226 216 78 0 chr6 141031838 141031889 -48247665 + MIR SINE MIR 83 137 -125 352 179 119 0 chr6 141031926 141032010 -48247544 - MER95 LTR ERV -329 102 9 658 236 92 6 chr6 141032175 141032349 -48247205 - MER5A DNA MER1_type 0 189 1 750 187 58 23 chr6 141032370 141032541 -48247013 + MER58A DNA MER1_type 48 224 0 482 274 98 57 chr6 141032843 141034297 -48245257 - L1MEd LINE L1 -3824 2305 784 370 58 0 231 chr6 141034674 141034778 -48244776 + MADE1 DNA Mariner 1 80 0 517 217 38 0 chr6 141035087 141035193 -48244361 - MER81 DNA DNA 0 114 5 23 33 0 0 chr6 141035873 141035903 -48243651 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr6 141035983 141036015 -48243539 + AT_rich Low_complexity Low_complexity 1 32 0 324 274 20 78 chr6 141036523 141036676 -48242878 + L1ME3A LINE L1 5903 6046 -124 10973 225 79 19 chr6 141036762 141037844 -48241710 - L1P4 LINE L1 -597 7007 5992 2233 117 0 0 chr6 141037844 141038144 -48241410 - AluSg SINE Alu -10 300 1 10973 225 79 19 chr6 141038144 141041522 -48238032 - L1P4 LINE L1 -1612 5992 2214 2148 99 20 0 chr6 141041529 141041832 -48237722 - AluY SINE Alu -2 309 1 287 309 32 0 chr6 141042073 141042167 -48237387 - L1P4 LINE L1 -5398 2183 2087 598 351 78 38 chr6 141042267 141042853 -48236701 - L1P4 LINE L1 -6177 1397 788 759 232 239 18 chr6 141043483 141043759 -48235795 + MER102b DNA MER1_type 2 338 -3 293 252 36 36 chr6 141045114 141045225 -48234329 - MIR SINE MIR -56 206 96 1877 161 137 11 chr6 141045508 141045888 -48233666 - MSTA LTR MaLR 0 428 1 1462 211 115 3 chr6 141046963 141047319 -48232235 - MSTD LTR MaLR 0 396 1 47 15 0 15 chr6 141047395 141047433 -48232121 + AT_rich Low_complexity Low_complexity 1 39 -25 647 192 0 0 chr6 141047433 141047553 -48232001 - L1PB3 LINE L1 -3 6151 6032 47 15 0 15 chr6 141047553 141047579 -48231975 + AT_rich Low_complexity Low_complexity 39 64 0 9524 168 22 17 chr6 141048760 141048888 -48230666 - L1PB1 LINE L1 0 6151 6025 1999 81 4 4 chr6 141048888 141049146 -48230408 - AluY SINE Alu -18 293 36 9524 168 22 17 chr6 141049146 141050984 -48228570 - L1PB1 LINE L1 -126 6025 4163 2271 82 3 47 chr6 141050984 141051303 -48228251 - AluSx SINE Alu -6 306 2 9524 168 22 17 chr6 141051303 141052414 -48227140 - L1PB1 LINE L1 -1988 4163 3059 724 258 197 43 chr6 141053676 141054179 -48225375 - MLT1H1 LTR MaLR 0 555 1 23 0 0 0 chr6 141054419 141054442 -48225112 + AT_rich Low_complexity Low_complexity 1 23 0 294 266 147 40 chr6 141055085 141055262 -48224292 - L3 LINE CR1 -175 1402 1207 230 255 20 0 chr6 141055287 141055338 -48224216 - L2 LINE L2 -2 3270 3219 * 857 308 128 10 chr6 141055337 141055764 -48223790 - L2 LINE L2 -278 3035 2552 23 54 0 0 chr6 141059523 141059560 -48219994 + AT_rich Low_complexity Low_complexity 1 37 0 185 367 101 0 chr6 141060911 141061020 -48218534 - L2 LINE L2 -2 3311 3192 1579 158 36 25 chr6 141061110 141061454 -48218100 + MER31A LTR ERV1 1 481 -4 915 247 10 92 chr6 141061535 141061827 -48217727 + Zaphod DNA AcHobo 1 268 -3763 7253 179 31 20 chr6 141061829 141062199 -48217355 + L1PA14 LINE L1 1209 1573 -5224 1795 92 57 64 chr6 141062199 141062481 -48217073 + AluSx SINE Alu 11 290 -22 7253 179 31 20 chr6 141062481 141064515 -48215039 + L1PA14 LINE L1 1573 3665 -3132 3615 161 28 4 chr6 141064512 141065694 -48213860 + L1PA14 LINE L1 5290 6495 -317 * 1889 159 38 24 chr6 141065783 141066153 -48213401 + THE1C LTR MaLR 1 375 0 24 67 0 0 chr6 141067202 141067247 -48212307 + AT_rich Low_complexity Low_complexity 1 45 0 306 382 66 7 chr6 141069026 141069178 -48210376 + L2 LINE L2 3112 3272 0 180 0 0 0 chr6 141069896 141069916 -48209638 + (TG)n Simple_repeat Simple_repeat 1 20 0 225 277 71 0 chr6 141070021 141070092 -48209462 - MIR SINE MIR -64 144 66 626 317 73 27 chr6 141070295 141070554 -48209000 + L2 LINE L2 2435 2705 -609 21299 168 45 11 chr6 141070563 141077903 -48201651 - L1MA2 LINE L1 0 7723 17 344 385 34 34 chr6 141077979 141078244 -48201310 + L2 LINE L2 2809 3073 -199 461 305 16 0 chr6 141078281 141078409 -48201145 - MER94 DNA DNA -4 130 1 419 310 21 14 chr6 141078452 141078594 -48200960 + L2 LINE L2 3162 3304 -9 1118 167 14 42 chr6 141078631 141078847 -48200707 + MER2 DNA MER2_type 1 210 -135 23 0 0 0 chr6 141078861 141078884 -48200670 + AT_rich Low_complexity Low_complexity 1 23 0 4018 125 19 0 chr6 141078893 141079517 -48200037 - L1PA16 LINE L1 -2 6164 5529 301 82 0 0 chr6 141079822 141079871 -48199683 + L1MA9 LINE L1 6257 6305 -7 731 234 116 6 chr6 141079935 141080708 -48198846 - L1ME3 LINE L1 -6 6156 5238 1223 275 117 22 chr6 141080756 141081765 -48197789 - L1MCb LINE L1 -4929 1494 813 490 300 50 57 chr6 141081858 141082309 -48197245 - L1MCb LINE L1 -5690 732 265 233 197 26 26 chr6 141082455 141082607 -48196947 + CT-rich Low_complexity Low_complexity 1 152 0 2093 143 105 37 chr6 141082610 141083066 -48196488 - L1MB8 LINE L1 -7 6171 5685 8564 133 48 55 chr6 141083068 141084643 -48194911 + Tigger1 DNA MER2_type 1 1564 -854 10632 206 46 53 chr6 141084645 141086809 -48192745 - L1M2 LINE L1 -541 6780 4601 2230 112 0 0 chr6 141086809 141087105 -48192449 + AluSg SINE Alu 1 296 -14 10632 206 46 53 chr6 141087105 141087163 -48192391 - L1M2 LINE L1 -2720 4601 4544 5951 102 13 3 chr6 141087163 141088309 -48191245 - L1PA11 LINE L1 -5 6169 5014 10632 206 46 53 chr6 141088309 141088443 -48191111 - L1M2 LINE L1 -2777 4544 4410 2553 118 3 3 chr6 141088443 141088807 -48190747 - THE1B LTR MaLR 0 364 1 10632 206 46 53 chr6 141088807 141092046 -48187508 - L1M2 LINE L1 -2911 4410 1223 387 73 0 0 chr6 141092091 141092146 -48187408 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 206 146 24 24 chr6 141092248 141092289 -48187265 + CT-rich Low_complexity Low_complexity 3 43 0 961 228 5 5 chr6 141092289 141092482 -48187072 - AluJb SINE Alu -118 194 2 1130 259 61 57 chr6 141092487 141093081 -48186473 - L1M4c LINE L1 -4732 2227 1632 1123 206 31 0 chr6 141093084 141093312 -48186242 - L1M4c LINE L1 -6613 246 12 4278 230 54 9 chr6 141093348 141095305 -48184249 + L1M2 LINE L1 2167 4209 -2639 35 41 0 0 chr6 141095583 141095632 -48183922 + AT_rich Low_complexity Low_complexity 1 49 0 200 349 0 0 chr6 141095657 141095720 -48183834 - MIR SINE MIR -67 141 79 2112 128 73 14 chr6 141095751 141096095 -48183459 + THE1B LTR MaLR 1 364 0 11580 88 11 2 chr6 141096095 141097661 -48181893 + THE1B-int LTR MaLR 1 1580 0 1879 130 140 9 chr6 141097661 141097983 -48181571 + THE1B LTR MaLR 1 364 0 2470 187 111 12 chr6 141098040 141098839 -48180715 + L1MD3 LINE L1 5221 5812 -366 2816 35 0 6 chr6 141098938 141099282 -48180272 + L1PA5 LINE L1 5804 6145 -9 794 306 134 33 chr6 141099589 141099752 -48179802 - L2 LINE L2 0 3313 3168 2000 212 97 9 chr6 141099752 141100215 -48179339 - MLT1D LTR MaLR -1 504 1 794 306 134 33 chr6 141100215 141100536 -48179018 - L2 LINE L2 -145 3168 2784 21 0 0 0 chr6 141101079 141101100 -48178454 + AT_rich Low_complexity Low_complexity 1 21 0 189 214 0 0 chr6 141102290 141102332 -48177222 + (TG)n Simple_repeat Simple_repeat 1 42 0 1102 209 28 34 chr6 141102482 141102802 -48176752 - MLT1B LTR MaLR -2 388 1 1040 16 0 16 chr6 141104034 141104159 -48175395 - L1PA3 LINE L1 0 6155 6033 1403 309 76 75 chr6 141104831 141106179 -48173375 - MER110-int LTR ERV1 0 4647 3299 531 246 62 110 chr6 141106304 141106641 -48172913 - MER110-int LTR ERV1 -1444 3203 2883 785 224 110 8 chr6 141106701 141106956 -48172598 + L1M4 LINE L1 4754 5034 -1112 410 288 39 65 chr6 141106957 141107301 -48172253 - MER110-int LTR ERV1 -2543 2104 1709 21 0 0 0 chr6 141107439 141107460 -48172094 + AT_rich Low_complexity Low_complexity 1 21 0 354 286 49 36 chr6 141109355 141109624 -48169930 - L1ME LINE L1 -319 5802 5424 2200 151 69 10 chr6 141109624 141110028 -48169526 + MSTA LTR MaLR 1 428 0 354 286 49 36 chr6 141110028 141110101 -48169453 - L1ME LINE L1 -697 5424 5353 1884 79 112 0 chr6 141110995 141111273 -48168281 + AluSg SINE Alu 1 309 -1 2306 105 0 3 chr6 141112109 141112415 -48167139 + AluSg SINE Alu 1 305 -5 274 368 83 51 chr6 141114249 141114600 -48164954 - L3b LINE CR1 -4 1579 1218 218 242 65 16 chr6 141115105 141115167 -48164387 - MIR SINE MIR -106 156 92 21 36 0 0 chr6 141116118 141116146 -48163408 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr6 141119930 141119964 -48159590 + AT_rich Low_complexity Low_complexity 1 34 0 186 340 107 30 chr6 141120149 141120346 -48159208 + L3 LINE CR1 1020 1231 -346 6354 86 9 0 chr6 141120906 141121789 -48157765 - L1PB1 LINE L1 -7 6144 5254 545 239 0 0 chr6 141121796 141121913 -48157641 + L1PB1 LINE L1 5135 5251 -895 1485 240 91 16 chr6 141122519 141123036 -48156518 - L1MC5 LINE L1 -291 7670 7115 523 326 64 59 chr6 141123067 141123812 -48155742 - HAL1b LINE L1 -511 837 89 204 224 30 15 chr6 141125088 141125155 -48154399 + (TA)n Simple_repeat Simple_repeat 1 68 0 21 36 0 0 chr6 141126282 141126310 -48153244 + AT_rich Low_complexity Low_complexity 1 28 0 406 307 114 12 chr6 141126532 141126698 -48152856 - MER5A DNA MER1_type 0 189 7 209 323 0 0 chr6 141127457 141127519 -48152035 - MER5A DNA MER1_type -3 186 125 735 236 0 0 chr6 141127548 141127692 -48151862 + MER5A DNA MER1_type 2 145 -44 306 265 22 66 chr6 141127581 141127717 -48151837 - MER5A DNA MER1_type -23 166 37 * 252 322 107 0 chr6 141128932 141129053 -48150501 + L2 LINE L2 3180 3313 0 403 147 13 0 chr6 141129493 141129568 -48149986 - MER116 DNA Mariner -4 76 1 186 353 115 16 chr6 141129845 141129967 -48149587 - MER5A DNA MER1_type -2 187 54 * 279 284 88 40 chr6 141129863 141130011 -48149543 + MER5A DNA MER1_type 35 189 0 * 339 352 77 22 chr6 141130011 141130158 -48149396 - MIR3 SINE MIR -43 165 9 268 341 7 7 chr6 141130622 141130757 -48148797 + L1M4 LINE L1 3684 3818 -2328 237 216 129 52 chr6 141130832 141130948 -48148606 + L1ME LINE L1 350 474 -5922 2261 244 60 45 chr6 141131660 141132728 -48146826 + L1ME LINE L1 782 1826 -4580 * 11612 224 14 16 chr6 141132722 141135472 -48144082 + L1P LINE L1 1524 4267 -1879 1602 307 62 6 chr6 141135593 141136092 -48143462 + L2 LINE L2 1035 1561 -1753 713 201 94 30 chr6 141138117 141138429 -48141125 - MER31B LTR ERV1 0 543 1 345 314 86 0 chr6 141138429 141138534 -48141020 + L2 LINE L2 3150 3263 -9 1281 144 19 8 chr6 141138584 141138895 -48140659 + THE1B LTR MaLR 1 364 0 441 254 115 12 chr6 141138989 141139154 -48140400 + MIR SINE MIR 20 201 -61 281 245 0 0 chr6 141139340 141139393 -48140161 + MIR3 SINE MIR 124 176 -32 469 226 29 0 chr6 141139670 141139772 -48139782 - L1MA9 LINE L1 -38 6274 6170 263 155 17 0 chr6 141140000 141140037 -48139517 + CT-rich Low_complexity Low_complexity 2 42 -18 249 33 0 0 chr6 141140037 141140067 -48139487 + (CA)n Simple_repeat Simple_repeat 1 30 0 263 155 17 0 chr6 141140067 141140087 -48139467 + CT-rich Low_complexity Low_complexity 42 60 0 21 0 0 0 chr6 141140202 141140223 -48139331 + AT_rich Low_complexity Low_complexity 1 21 0 4801 209 40 24 chr6 141141055 141142186 -48137368 - L1 LINE L1 -1806 4544 3388 2310 104 7 0 chr6 141142186 141142495 -48137059 - AluSq SINE Alu -2 311 1 4801 209 40 24 chr6 141142495 141142653 -48136901 - L1 LINE L1 -2962 3388 3234 3792 133 20 12 chr6 141142683 141143347 -48136207 - L1MA5A LINE L1 -8 6289 5621 4748 194 23 14 chr6 141143348 141144448 -48135106 - L1MA5A LINE L1 -844 5302 4194 334 208 0 13 chr6 141144499 141144576 -48134978 - L1M3 LINE L1 -471 5709 5634 704 283 0 0 chr6 141144592 141144744 -48134810 - L1 LINE L1 -5754 527 376 314 294 28 49 chr6 141144739 141144882 -48134672 - HAL1b LINE L1 -808 540 401 * 215 171 24 0 chr6 141144965 141145006 -48134548 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 918 286 48 31 chr6 141145857 141146230 -48133324 + L1ME3A LINE L1 5583 5948 -222 2567 90 6 8 chr6 141146230 141146586 -48132968 - THE1A LTR MaLR 0 355 1 11221 95 15 0 chr6 141146586 141148143 -48131411 - THE1A-int LTR MaLR 0 1580 1 2610 88 8 6 chr6 141148143 141148497 -48131057 - THE1A LTR MaLR 0 355 1 918 286 48 31 chr6 141148497 141148537 -48131017 + L1ME3A LINE L1 5947 6005 -165 32 43 0 0 chr6 141148834 141148880 -48130674 + AT_rich Low_complexity Low_complexity 1 46 0 986 271 4 20 chr6 141149310 141149518 -48130036 - MIR SINE MIR -18 244 39 2022 158 11 11 chr6 141149518 141149879 -48129675 - MER46B DNA MER2_type 0 236 1 986 271 4 20 chr6 141149879 141149917 -48129637 - MIR SINE MIR -223 39 2 1972 164 30 9 chr6 141149970 141150299 -48129255 - MER7A DNA MER2_type -5 341 8 380 244 22 0 chr6 141150736 141150826 -48128728 + L1ME LINE L1 5619 5710 -452 210 173 77 29 chr6 141150950 141151054 -48128500 + (TTAAA)n Simple_repeat Simple_repeat 5 113 0 325 340 43 26 chr6 141151131 141151363 -48128191 + HAL1b LINE L1 991 1226 -122 33 0 0 0 chr6 141151901 141151934 -48127620 + AT_rich Low_complexity Low_complexity 1 33 0 214 276 69 23 chr6 141152280 141152367 -48127187 + L2 LINE L2 3217 3307 -6 921 330 84 72 chr6 141153082 141154156 -48125398 - L3 LINE CR1 -121 1456 370 1856 116 0 4 chr6 141154158 141154425 -48125129 + AluY SINE Alu 1 266 -45 1460 271 23 60 chr6 141154535 141155187 -48124367 + L1MC3 LINE L1 3379 4006 -2140 1888 168 69 30 chr6 141155188 141155727 -48123827 + MLT2A2 LTR ERVL 1 554 0 2595 248 39 36 chr6 141155727 141156650 -48122904 + L1MC3 LINE L1 4003 4928 -1218 317 208 13 0 chr6 141156745 141156822 -48122732 + L1MC3 LINE L1 4959 5036 -1110 * 2727 205 45 26 chr6 141156809 141157512 -48122042 + L1MC3 LINE L1 5937 6653 -1132 427 149 0 0 chr6 141157508 141157582 -48121972 - L1 LINE L1 -1121 5025 4952 * 3343 189 9 13 chr6 141157582 141158277 -48121277 + L1P LINE L1 4236 4927 -1219 3721 176 77 56 chr6 141158324 141158470 -48121084 + L1MC3 LINE L1 6859 7000 -785 231 88 0 0 chr6 141158470 141158504 -48121050 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 3721 176 77 56 chr6 141158504 141158986 -48120568 + L1MC3 LINE L1 7000 7514 -271 2220 108 3 3 chr6 141158986 141159293 -48120261 + AluSp SINE Alu 1 307 -6 3721 176 77 56 chr6 141159293 141159570 -48119984 + L1MC3 LINE L1 7514 7784 -1 1790 139 54 0 chr6 141159661 141159941 -48119613 - AluSx SINE Alu -17 295 1 1616 179 41 27 chr6 141159970 141160338 -48119216 + THE1C LTR MaLR 3 375 0 9650 130 7 35 chr6 141160342 141161963 -48117591 + THE1C-int LTR MaLR 5 1580 0 1581 154 93 35 chr6 141161963 141162306 -48117248 + THE1C LTR MaLR 1 363 -12 1223 234 114 15 chr6 141162324 141162718 -48116836 + L1ME3A LINE L1 5660 6092 -78 228 277 64 0 chr6 141162874 141162968 -48116586 - L1MC5 LINE L1 -54 7907 7808 500 261 6 12 chr6 141162986 141163043 -48116511 - L1MA10 LINE L1 -2 6332 6276 2662 233 39 17 chr6 141163043 141163737 -48115817 - L1ME1 LINE L1 -50 6116 5408 326 247 10 10 chr6 141163739 141163836 -48115718 + L1M LINE L1 5315 5411 -831 * 1774 208 0 19 chr6 141163833 141164204 -48115350 - L1MC3 LINE L1 -1858 5927 5564 1594 163 11 7 chr6 141164298 141164568 -48114986 + AluSx SINE Alu 1 271 -41 261 0 0 0 chr6 141164569 141164598 -48114956 + (TC)n Simple_repeat Simple_repeat 2 30 0 306 166 57 19 chr6 141164601 141164872 -48114682 + (TA)n Simple_repeat Simple_repeat 1 281 0 255 177 32 0 chr6 141164935 141164997 -48114557 + L1MC4 LINE L1 6640 6703 -1339 * 792 192 7 7 chr6 141164990 141165136 -48114418 + L1 LINE L1 4005 4150 -1996 27 92 0 0 chr6 141165907 141165983 -48113571 + AT_rich Low_complexity Low_complexity 1 76 0 299 0 0 0 chr6 141166098 141166131 -48113423 - L1M1 LINE L1 -562 5740 5708 * 675 126 108 21 chr6 141166122 141166264 -48113290 + L1MA1 LINE L1 6141 6300 -3 370 329 114 9 chr6 141166417 141166636 -48112918 + MIR SINE MIR 20 261 -1 469 246 65 80 chr6 141166713 141166912 -48112642 - MIR3 SINE MIR -12 196 1 376 275 116 14 chr6 141168357 141168495 -48111059 - MIR SINE MIR -61 201 50 217 296 56 88 chr6 141168643 141168893 -48110661 + L2 LINE L2 1750 1991 -1323 239 323 110 45 chr6 141169077 141169232 -48110322 + MLT1K LTR MaLR 196 360 -228 243 61 0 0 chr6 141169248 141169281 -48110273 + (TC)n Simple_repeat Simple_repeat 2 34 0 456 377 33 21 chr6 141169885 141170304 -48109250 + L2 LINE L2 1972 2395 -919 799 222 49 63 chr6 141172128 141172182 -48107372 - L1ME LINE L1 -505 5728 5675 1511 238 31 18 chr6 141172182 141172573 -48106981 - MSTD LTR MaLR 0 396 1 799 222 49 63 chr6 141172573 141172865 -48106689 - L1ME LINE L1 -558 5675 5387 21 0 0 0 chr6 141173184 141173205 -48106349 + AT_rich Low_complexity Low_complexity 1 21 0 2303 271 133 54 chr6 141173223 141175170 -48104384 - L1ME LINE L1 -999 5216 3117 350 236 47 14 chr6 141175200 141175348 -48104206 - L1ME LINE L1 -4615 1781 1629 711 148 33 16 chr6 141175359 141175481 -48104073 + L1MA3 LINE L1 10 133 -7432 * 10445 130 21 72 chr6 141175478 141177415 -48102139 + L1MA3 LINE L1 1099 2936 -4629 4916 147 3 21 chr6 141177415 141178297 -48101257 + L1MA3 LINE L1 6859 7724 0 1257 193 15 82 chr6 141178316 141178720 -48100834 - L1MA7 LINE L1 0 6291 5915 2222 200 68 70 chr6 141178875 141179273 -48100281 - L1MA7 LINE L1 0 6154 5757 2529 49 3 0 chr6 141179273 141179577 -48099977 - AluY SINE Alu -6 305 1 2222 200 68 70 chr6 141179577 141180068 -48099486 - L1MA7 LINE L1 -397 5757 5288 183 354 94 10 chr6 141180466 141180562 -48098992 - L3 LINE CR1 -1472 105 2 2484 64 0 3 chr6 141180583 141180894 -48098660 - AluY SINE Alu -1 310 1 23 54 0 0 chr6 141181226 141181263 -48098291 + AT_rich Low_complexity Low_complexity 1 37 0 3015 123 51 6 chr6 141181285 141181774 -48097780 + MER9 LTR ERVK 1 511 0 2228 124 32 32 chr6 141181774 141182153 -48097401 + HERVK9 LTR ERVK 1 379 -5537 25570 142 16 13 chr6 141182153 141188087 -48091467 + L1PA8 LINE L1 454 6467 -20 327 252 9 18 chr6 141188099 141188210 -48091344 + L1ME LINE L1 5322 5431 -739 341 342 71 34 chr6 141189033 141189300 -48090254 - L1MDa LINE L1 -898 1592 1220 1180 296 94 59 chr6 141189311 141190255 -48089299 - L1MDa LINE L1 -4934 1185 209 6827 134 19 5 chr6 141191039 141192404 -48087150 - L1MA2 LINE L1 0 7723 6339 * 20551 173 26 17 chr6 141192400 141193441 -48086113 - L1MA2 LINE L1 -2701 4864 3834 1988 141 0 7 chr6 141193441 141193740 -48085814 - AluSx SINE Alu -15 297 1 20551 173 26 17 chr6 141193740 141193784 -48085770 - L1MA2 LINE L1 -3731 3834 3792 8677 119 22 0 chr6 141193784 141195040 -48084514 - HSMAR1 DNA Mariner 0 1287 4 20551 173 26 17 chr6 141195040 141198759 -48080795 - L1MA2 LINE L1 -3773 3792 16 27 0 0 0 chr6 141199405 141199432 -48080122 + AT_rich Low_complexity Low_complexity 1 27 0 1899 151 53 8 chr6 141199435 141199813 -48079741 - L1MA8 LINE L1 -6 6285 5891 2950 155 8 10 chr6 141199834 141200356 -48079198 - L1MA8 LINE L1 -1124 5022 4502 21 36 0 0 chr6 141200461 141200489 -48079065 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr6 141202357 141202384 -48077170 + AT_rich Low_complexity Low_complexity 1 27 0 1913 143 49 0 chr6 141205625 141205912 -48073642 + AluSx SINE Alu 1 301 -11 2076 151 134 52 chr6 141207996 141208472 -48071082 - MLT2B2 LTR ERVL 0 515 1 1832 162 3 34 chr6 141208795 141209116 -48070438 - AluJb SINE Alu -1 311 1 225 352 92 84 chr6 141209564 141209899 -48069655 + L2 LINE L2 2915 3252 -20 258 250 0 0 chr6 141210087 141210139 -48069415 + GA-rich Low_complexity Low_complexity 1 52 0 218 31 0 31 chr6 141213202 141213234 -48066320 + (TG)n Simple_repeat Simple_repeat 2 32 0 32 57 0 0 chr6 141214211 141214264 -48065290 + AT_rich Low_complexity Low_complexity 1 53 0 2360 228 73 35 chr6 141214605 141215530 -48064024 + Charlie2 DNA MER1_type 1901 2861 -1 206 325 98 24 chr6 141215911 141216034 -48063520 + L2 LINE L2 3179 3310 -3 45 34 0 0 chr6 141217298 141217357 -48062197 + AT_rich Low_complexity Low_complexity 1 59 0 869 283 143 35 chr6 141217779 141218529 -48061025 - L2 LINE L2 0 3313 2469 465 346 29 5 chr6 141218605 141218813 -48060741 - L2 LINE L2 -612 2702 2490 245 328 34 73 chr6 141218978 141219155 -48060399 - MIR SINE MIR -55 207 38 430 171 0 45 chr6 141219244 141219332 -48060222 + L2 LINE L2 3225 3308 -5 319 324 11 11 chr6 141219699 141219838 -48059716 + MLT1I LTR MaLR 93 221 -188 2267 147 13 11 chr6 141220838 141221219 -48058335 - L1MA7 LINE L1 -442 5849 5468 1667 171 110 57 chr6 141221854 141222405 -48057149 + MER4A LTR ERV1 1 445 -20 2459 20 41 0 chr6 141223645 141223938 -48055616 + AluY SINE Alu 1 305 -6 638 307 140 34 chr6 141225517 141225960 -48053594 - L3 LINE CR1 -160 1417 928 470 220 11 0 chr6 141226221 141226312 -48053242 + MER20 DNA MER1_type 1 92 -127 2691 13 0 0 chr6 141226355 141226654 -48052900 + AluYa5 SINE Alu 1 299 -12 649 334 134 18 chr6 141226658 141226855 -48052699 - L3 LINE CR1 -859 718 545 3405 179 28 58 chr6 141226855 141227706 -48051848 - LTR1B LTR ERV1 0 826 1 649 334 134 18 chr6 141227706 141227954 -48051600 - L3 LINE CR1 -1032 545 221 185 373 80 15 chr6 141228221 141228534 -48051020 - L2 LINE L2 -176 3096 2765 2090 101 4 0 chr6 141228730 141229006 -48050548 - AluSp SINE Alu -36 277 1 27 0 0 0 chr6 141229175 141229202 -48050352 + AT_rich Low_complexity Low_complexity 1 27 0 2301 205 9 66 chr6 141229783 141230358 -48049196 + MLT1F LTR MaLR 1 542 0 236 173 0 0 chr6 141230637 141230689 -48048865 + L1MC4 LINE L1 6652 6703 -1339 272 137 20 0 chr6 141230709 141230760 -48048794 + (TA)n Simple_repeat Simple_repeat 1 52 0 345 300 0 0 chr6 141230972 141231062 -48048492 - L1MC4 LINE L1 -1339 6703 6614 285 216 93 65 chr6 141231168 141231307 -48048247 - L1 LINE L1 -1232 4914 4772 1323 195 63 32 chr6 141231307 141231655 -48047899 - L1 LINE L1 -1332 4814 4456 * 6566 192 30 23 chr6 141231652 141233098 -48046456 - L1 LINE L1 -1499 4647 3189 2043 129 7 0 chr6 141233098 141233407 -48046147 - AluSq SINE Alu -2 311 1 6566 192 30 23 chr6 141233407 141233542 -48046012 - L1 LINE L1 -2957 3189 3056 21 0 0 0 chr6 141233607 141233628 -48045926 + AT_rich Low_complexity Low_complexity 1 21 0 5465 98 4 1 chr6 141233735 141234548 -48045006 + L1PA7 LINE L1 5347 6161 0 1741 204 3 14 chr6 141234558 141234906 -48044648 + MER7A DNA MER2_type 5 346 0 865 243 70 70 chr6 141234909 141235349 -48044205 - L1 LINE L1 -1836 4310 3871 208 70 47 0 chr6 141235442 141235485 -48044069 + A-rich Low_complexity Low_complexity 1 45 0 33 25 0 0 chr6 141236399 141236439 -48043115 + AT_rich Low_complexity Low_complexity 1 40 0 909 200 24 0 chr6 141236647 141236817 -48042737 - FRAM SINE Alu -2 174 1 312 91 0 0 chr6 141237158 141237202 -48042352 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 214 260 0 0 chr6 141237268 141237318 -48042236 + (TG)n Simple_repeat Simple_repeat 1 50 0 2202 110 3 0 chr6 141237495 141237795 -48041759 - AluSx SINE Alu -7 305 5 273 265 145 0 chr6 141238737 141238820 -48040734 - L2 LINE L2 -6 3266 3172 1058 154 11 0 chr6 141239177 141239352 -48040202 + MER5B DNA MER1_type 2 178 0 3285 229 53 23 chr6 141239491 141241073 -48038481 - L1ME2 LINE L1 -6 6158 4529 239 242 39 16 chr6 141241103 141241231 -48038323 - L1ME2 LINE L1 -1701 4445 4315 30506 121 63 14 chr6 141241238 141246408 -48033146 + L1P3 LINE L1 7 5437 -735 6035 138 21 22 chr6 141246525 141248222 -48031332 + L1MA8 LINE L1 4340 6032 -259 2518 50 0 0 chr6 141248222 141248521 -48031033 + AluY SINE Alu 1 299 -12 6035 138 21 22 chr6 141248521 141248767 -48030787 + L1MA8 LINE L1 6032 6277 -14 298 281 150 54 chr6 141250382 141250549 -48029005 + MER5A DNA MER1_type 4 186 -3 310 303 154 12 chr6 141251054 141251216 -48028338 + MIR SINE MIR 9 193 -69 2149 126 3 0 chr6 141252278 141252579 -48026975 - AluSx SINE Alu -10 302 1 227 376 94 8 chr6 141253013 141253130 -48026424 - MIR SINE MIR -62 146 20 714 291 113 52 chr6 141253278 141254371 -48025183 + L1MEd LINE L1 6 1257 -4862 559 260 8 0 chr6 141254579 141254702 -48024852 + LTR16A LTR ERVL 325 448 -2 339 244 40 45 chr6 141254748 141254924 -48024630 + L1MC5 LINE L1 7608 7782 -179 289 186 0 17 chr6 141255042 141255101 -48024453 + MLT2C2 LTR ERVL 407 464 0 363 250 34 0 chr6 141255169 141255257 -48024297 - L1MB8 LINE L1 -197 5981 5891 210 393 14 35 chr6 141256691 141256836 -48022718 - L2 LINE L2 -12 3260 3119 456 301 80 30 chr6 141258497 141258696 -48020858 - L2 LINE L2 -1033 2281 2073 303 135 0 0 chr6 141258764 141258816 -48020738 - L1MB1 LINE L1 0 6168 6117 4655 98 35 17 chr6 141258977 141259691 -48019863 - L1PA11 LINE L1 -1 6173 5447 715 130 0 0 chr6 141259691 141259799 -48019755 - L1MB1 LINE L1 -33 6135 6028 209 32 0 32 chr6 141260181 141260212 -48019342 + (TA)n Simple_repeat Simple_repeat 1 30 0 21 43 0 22 chr6 141260395 141260421 -48019133 + AT_rich Low_complexity Low_complexity 1 27 -18 879 207 0 18 chr6 141260421 141260590 -48018964 + FAM SINE Alu 1 166 -9 21 43 0 22 chr6 141260590 141260609 -48018945 + AT_rich Low_complexity Low_complexity 27 45 0 222 254 0 0 chr6 141260658 141260725 -48018829 + CT-rich Low_complexity Low_complexity 2 68 0 756 148 16 28 chr6 141260743 141260925 -48018629 + CT-rich Low_complexity Low_complexity 1 180 0 546 119 0 0 chr6 141261191 141261275 -48018279 + (TCC)n Simple_repeat Simple_repeat 3 86 0 1667 279 104 28 chr6 141261673 141262423 -48017131 + L2 LINE L2 2000 2806 -508 40 21 0 0 chr6 141262549 141262596 -48016958 + AT_rich Low_complexity Low_complexity 1 47 0 197 315 34 11 chr6 141263406 141263495 -48016059 + L2 LINE L2 2890 2980 -292 329 321 36 88 chr6 141263503 141263777 -48015777 - MIR SINE MIR -2 260 1 3218 184 42 20 chr6 141264043 141264739 -48014815 - L1PB4 LINE L1 -8 6148 5438 * 7454 28 6 0 chr6 141264737 141265748 -48013806 + L1PA4 LINE L1 5136 6151 -4 12865 216 13 38 chr6 141265749 141269576 -48009978 - L1PB4 LINE L1 -708 5448 1808 707 142 0 0 chr6 141269576 141269682 -48009872 - U6 snRNA snRNA 0 107 2 22 0 0 0 chr6 141269874 141269896 -48009658 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 141272085 141272113 -48007441 + AT_rich Low_complexity Low_complexity 1 28 0 38483 40 2 4 chr6 141273119 141278648 -48000906 - L1PA4 LINE L1 -3 6152 635 699 128 0 0 chr6 141280136 141280245 -47999309 - L1PA15 LINE L1 -8 6157 6049 1062 90 0 0 chr6 141280383 141280516 -47999038 + AluY SINE Alu 2 134 -177 1443 311 0 72 chr6 141280516 141280850 -47998704 + AluSx SINE Alu 1 310 -2 930 253 99 61 chr6 141280889 141281443 -47998111 + L2 LINE L2 1273 1847 -1467 1455 333 87 25 chr6 141283229 141284092 -47995462 + L2 LINE L2 1842 2757 -557 1658 225 38 79 chr6 141284696 141285230 -47994324 + MLT2B1 LTR ERVL 1 512 -8 214 177 76 25 chr6 141287183 141287281 -47992273 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 4163 168 18 0 chr6 141287723 141288455 -47991099 - L1PA16 LINE L1 -9 6157 5413 27272 96 6 14 chr6 141288455 141293389 -47986165 - L1PA7 LINE L1 -2 6152 1259 2560 202 6 12 chr6 141293515 141294216 -47985338 + L1P5 LINE L1 4752 5449 -707 8502 48 3 0 chr6 141294216 141296046 -47983508 - L1PA5 LINE L1 -8 6146 4315 584 299 94 36 chr6 141296384 141296761 -47982793 + L1M4c LINE L1 1288 1647 -5007 2464 237 46 9 chr6 141296762 141297459 -47982095 - L1M3c LINE L1 -4581 1560 838 1521 249 47 34 chr6 141297456 141297990 -47981564 + L1M4c LINE L1 1671 2211 -4523 * 399 219 97 0 chr6 141298066 141298180 -47981374 + LTR65 LTR ERV1 440 564 -105 201 202 11 22 chr6 141298271 141298360 -47981194 + (TA)n Simple_repeat Simple_repeat 2 89 0 270 332 97 61 chr6 141298654 141299160 -47980394 + L1MEd LINE L1 315 838 -5281 15325 119 9 39 chr6 141299455 141302670 -47976884 - L1P3 LINE L1 -2975 3486 316 713 252 52 5 chr6 141305404 141305614 -47973940 + L1ME2 LINE L1 5898 6117 -47 282 315 42 21 chr6 141306221 141306364 -47973190 - MIR SINE MIR -21 241 96 22 35 0 0 chr6 141307441 141307470 -47972084 + AT_rich Low_complexity Low_complexity 1 29 0 254 309 9 9 chr6 141307492 141307602 -47971952 - L1ME4a LINE L1 -55 6066 5957 240 86 0 0 chr6 141307855 141307890 -47971664 + (CA)n Simple_repeat Simple_repeat 2 36 0 25 51 0 0 chr6 141307998 141308037 -47971517 + AT_rich Low_complexity Low_complexity 1 39 0 2787 10 0 0 chr6 141308353 141308656 -47970898 - AluYa5 SINE Alu -8 303 1 947 195 29 0 chr6 141308694 141308868 -47970686 + MER20 DNA MER1_type 3 181 -38 204 40 0 0 chr6 141309105 141309130 -47970424 + (TA)n Simple_repeat Simple_repeat 1 25 0 507 309 136 0 chr6 141309208 141309451 -47970103 - HAL1 LINE L1 -626 1881 1606 476 309 46 23 chr6 141309500 141309849 -47969705 - HAL1 LINE L1 -1153 1354 998 251 291 48 18 chr6 141311735 141311900 -47967654 + L1ME4a LINE L1 5936 6105 -16 21 36 0 0 chr6 141312086 141312114 -47967440 + AT_rich Low_complexity Low_complexity 1 28 0 661 256 14 76 chr6 141312146 141312369 -47967185 + MER63A DNA MER1_type 1 209 -1 198 0 0 0 chr6 141315664 141315686 -47963868 + (T)n Simple_repeat Simple_repeat 1 22 0 275 240 40 0 chr6 141316228 141316303 -47963251 + GA-rich Low_complexity Low_complexity 6 83 0 279 339 39 39 chr6 141316389 141316519 -47963035 - MIR SINE MIR -92 170 41 419 0 20 0 chr6 141317587 141317638 -47961916 + (TG)n Simple_repeat Simple_repeat 2 53 0 228 174 0 0 chr6 141319992 141320038 -47959516 - LTR66 LTR ERVL -171 439 394 6057 98 12 0 chr6 141320069 141321051 -47958503 - L1PA13 LINE L1 -19 6144 5151 378 261 99 94 chr6 141321761 141323012 -47956542 - L1MEd LINE L1 -2718 3411 2155 21 71 0 0 chr6 141323239 141323281 -47956273 + AT_rich Low_complexity Low_complexity 1 42 0 1485 179 23 23 chr6 141323314 141323615 -47955939 - AluJo SINE Alu -11 301 1 341 307 90 37 chr6 141323688 141323877 -47955677 + LTR33 LTR ERVL 15 213 -308 657 227 12 35 chr6 141323939 141324111 -47955443 - MER46C DNA MER2_type -170 168 1 1369 196 24 92 chr6 141324254 141324678 -47954876 - L1MC4a LINE L1 0 7808 7414 * 1485 204 76 42 chr6 141324671 141325078 -47954476 - L1MC4a LINE L1 -701 7107 6687 572 329 122 44 chr6 141325078 141325710 -47953844 - L1MEd LINE L1 -5427 692 12 1760 65 0 65 chr6 141325732 141326011 -47953543 + AluY SINE Alu 56 318 0 21 82 0 0 chr6 141327065 141327114 -47952440 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr6 141327712 141327744 -47951810 + AT_rich Low_complexity Low_complexity 1 32 0 26 50 0 0 chr6 141328783 141328823 -47950731 + AT_rich Low_complexity Low_complexity 1 40 0 546 273 23 0 chr6 141329787 141329915 -47949639 - MER58B DNA MER1_type -28 313 183 561 283 116 0 chr6 141330121 141330294 -47949260 + MIR SINE MIR 59 251 -11 25 31 0 0 chr6 141331088 141331120 -47948434 + AT_rich Low_complexity Low_complexity 1 32 0 325 276 98 57 chr6 141331126 141331604 -47947950 - HAL1 LINE L1 -4 2503 2006 544 243 46 0 chr6 141331632 141331784 -47947770 - HAL1 LINE L1 -966 1541 1383 1232 233 3 9 chr6 141331826 141332143 -47947411 - L1 LINE L1 -852 5294 4980 793 184 0 0 chr6 141333050 141333191 -47946363 - L1P LINE L1 -1165 4981 4841 * 5452 123 16 7 chr6 141333189 141334044 -47945510 + L1PA16 LINE L1 5304 6166 0 649 267 143 48 chr6 141334118 141334511 -47945043 - HAL1 LINE L1 -1216 1291 862 659 130 0 9 chr6 141334546 141334661 -47944893 + (TCCCC)n Simple_repeat Simple_repeat 3 116 0 10860 191 47 28 chr6 141334661 141337698 -47941856 + L1PBa LINE L1 1094 4233 -2629 2146 118 10 0 chr6 141337698 141337995 -47941559 + AluSq SINE Alu 1 300 -13 10860 191 47 28 chr6 141337995 141338983 -47940571 + L1PBa LINE L1 4233 5200 -1662 690 313 122 9 chr6 141339020 141339553 -47940001 + L1ME3 LINE L1 5349 5941 -221 879 286 102 16 chr6 141339568 141339939 -47939615 + L1M4b LINE L1 21 423 -6436 661 130 0 0 chr6 141339952 141340060 -47939494 + Tigger3(Golem) DNA MER2_type 221 328 -2701 1208 266 67 70 chr6 141340068 141340829 -47938725 + L1M4b LINE L1 2025 2784 -4175 207 0 0 0 chr6 141340829 141340852 -47938702 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1208 266 67 70 chr6 141340852 141341130 -47938424 + L1M4b LINE L1 2784 3061 -3898 * 1746 207 56 48 chr6 141341129 141341613 -47937941 + L1MB8 LINE L1 5689 6176 -2 750 211 86 77 chr6 141343174 141343487 -47936067 - MER5C DNA MER1_type 0 324 9 2064 151 62 42 chr6 141343587 141343992 -47935562 - MSTA LTR MaLR -11 417 5 206 217 50 33 chr6 141344260 141344320 -47935234 + CT-rich Low_complexity Low_complexity 5 65 0 1710 221 11 24 chr6 141345123 141345499 -47934055 + MLT1A2 LTR MaLR 4 374 0 341 272 29 98 chr6 141348723 141348969 -47930585 - L2 LINE L2 -6 3307 3079 508 249 57 40 chr6 141349187 141349364 -47930190 - MIR SINE MIR -2 260 81 353 339 40 8 chr6 141349332 141349456 -47930098 - L2 LINE L2 -474 2840 2713 * 388 380 0 8 chr6 141349548 141349669 -47929885 + L2 LINE L2 3146 3265 -7 1971 171 23 3 chr6 141349893 141350245 -47929309 - MLT1A1 LTR MaLR 0 365 7 28 29 0 0 chr6 141350656 141350691 -47928863 + AT_rich Low_complexity Low_complexity 1 35 0 225 383 19 9 chr6 141351715 141351822 -47927732 + L3 LINE CR1 1443 1550 -27 319 279 93 23 chr6 141351876 141352095 -47927459 + L1ME3A LINE L1 5738 5966 -196 1763 163 0 10 chr6 141352340 141352641 -47926913 - AluSx SINE Alu -14 298 1 2270 88 0 44 chr6 141353689 141354006 -47925548 - AluSq SINE Alu -9 304 2 22 35 0 0 chr6 141354703 141354732 -47924822 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr6 141356127 141356155 -47923399 + (TC)n Simple_repeat Simple_repeat 2 29 0 196 130 43 0 chr6 141356155 141356201 -47923353 + (TA)n Simple_repeat Simple_repeat 2 49 0 237 33 0 0 chr6 141356757 141356787 -47922767 + (TG)n Simple_repeat Simple_repeat 2 31 0 27 0 0 0 chr6 141356905 141356932 -47922622 + AT_rich Low_complexity Low_complexity 1 27 0 268 265 302 16 chr6 141357588 141357777 -47921777 + MIR SINE MIR 20 262 0 22 35 0 0 chr6 141357820 141357849 -47921705 + AT_rich Low_complexity Low_complexity 1 29 0 2807 107 3 0 chr6 141358643 141359026 -47920528 - MLT2A2 LTR ERVL -69 384 1 412 292 113 59 chr6 141359848 141360221 -47919333 + MLT1L LTR MaLR 122 514 -101 430 294 40 0 chr6 141360278 141360404 -47919150 + MIR SINE MIR 2 132 -130 444 288 80 12 chr6 141361788 141361951 -47917603 + MIR SINE MIR 89 262 0 21 36 0 0 chr6 141362799 141362827 -47916727 + AT_rich Low_complexity Low_complexity 1 28 0 796 327 89 24 chr6 141363341 141363711 -47915843 - L3 LINE CR1 -5 1572 1179 196 363 104 7 chr6 141363724 141363859 -47915695 - L2 LINE L2 -4 3268 3121 24 0 0 0 chr6 141364489 141364513 -47915041 + AT_rich Low_complexity Low_complexity 1 24 0 369 359 16 0 chr6 141364578 141364706 -47914848 - MIR SINE MIR -41 221 92 280 350 35 14 chr6 141367520 141367663 -47911891 + MIR SINE MIR 117 262 0 222 235 0 0 chr6 141368664 141368715 -47910839 + (TA)n Simple_repeat Simple_repeat 2 52 0 23 92 0 0 chr6 141368771 141368836 -47910718 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr6 141370132 141370155 -47909399 + AT_rich Low_complexity Low_complexity 1 23 0 183 321 0 18 chr6 141371723 141371779 -47907775 + MIR SINE MIR 29 83 -179 329 311 37 37 chr6 141371942 141371984 -47907570 + MIR SINE MIR 102 143 -119 1780 166 7 3 chr6 141371984 141372273 -47907281 - AluJb SINE Alu -22 290 1 329 311 37 37 chr6 141372273 141372391 -47907163 + MIR SINE MIR 142 262 0 972 224 221 40 chr6 141374659 141375189 -47904365 - MLT1E2 LTR MaLR 0 626 1 42062 57 4 0 chr6 141375418 141381528 -47898026 + L1PA5 LINE L1 11 6145 -9 21 36 0 0 chr6 141381528 141381556 -47897998 + AT_rich Low_complexity Low_complexity 1 28 0 283 287 63 113 chr6 141381714 141382049 -47897505 + MLT1G1-int LTR MaLR 1054 1371 0 230 69 0 0 chr6 141382050 141382079 -47897475 + MLT1G1 LTR MaLR 2 30 -565 1682 243 31 73 chr6 141382160 141382679 -47896875 + MLT1G1 LTR MaLR 72 568 -27 2396 97 0 0 chr6 141383608 141383918 -47895636 + AluSg SINE Alu 1 310 0 353 183 84 0 chr6 141384828 141384899 -47894655 + LTR8 LTR ERV1 1 77 -614 * 397 158 33 117 chr6 141384875 141384995 -47894559 + LTR8A LTR ERV1 618 727 0 209 231 46 9 chr6 141385973 141386081 -47893473 + (TA)n Simple_repeat Simple_repeat 2 113 0 410 351 30 6 chr6 141386211 141386379 -47893175 - MIR SINE MIR -70 192 21 676 280 6 6 chr6 141386863 141387031 -47892523 - MIR SINE MIR -91 171 4 214 146 0 49 chr6 141387318 141387359 -47892195 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 224 359 38 0 chr6 141387526 141387632 -47891922 + MIR3 SINE MIR 99 208 0 273 210 0 0 chr6 141387733 141387795 -47891759 + CT-rich Low_complexity Low_complexity 1 62 0 808 278 0 0 chr6 141388743 141388905 -47890649 + MER45A DNA AcHobo 16 177 -1 258 302 112 59 chr6 141389041 141389210 -47890344 - MIR3 SINE MIR -13 195 18 26 0 0 0 chr6 141390637 141390663 -47888891 + AT_rich Low_complexity Low_complexity 1 26 0 261 0 0 0 chr6 141390706 141390735 -47888819 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr6 141391180 141391209 -47888345 + AT_rich Low_complexity Low_complexity 1 29 0 413 341 65 0 chr6 141391340 141391510 -47888044 + MIR SINE MIR 13 193 -69 2501 113 11 6 chr6 141392711 141393073 -47886481 + THE1B LTR MaLR 1 364 0 309 26 0 0 chr6 141393510 141393548 -47886006 + (CA)n Simple_repeat Simple_repeat 1 38 0 361 383 82 12 chr6 141393876 141394119 -47885435 + MIR SINE MIR 3 262 0 2218 101 0 3 chr6 141394199 141394487 -47885067 + AluSx SINE Alu 9 295 -17 2228 128 29 32 chr6 141394624 141395000 -47884554 - THE1C LTR MaLR 0 375 1 9808 119 28 41 chr6 141395000 141396601 -47882953 - THE1C-int LTR MaLR 0 1580 2 2286 103 38 24 chr6 141396602 141396972 -47882582 - THE1C LTR MaLR 0 375 1 14055 157 13 4 chr6 141399175 141401650 -47877904 + L1PA11 LINE L1 2605 5102 -1044 5780 108 24 0 chr6 141401642 141402482 -47877072 + L1PA11 LINE L1 5314 6173 -1 * 300 295 83 14 chr6 141403628 141403845 -47875709 + L1MCc LINE L1 1283 1514 -4909 854 313 85 12 chr6 141403878 141404762 -47874792 + L1MCc LINE L1 1596 2678 -4263 1720 147 78 39 chr6 141404815 141405176 -47874378 - THE1C LTR MaLR 0 375 1 3734 153 11 11 chr6 141405176 141405792 -47873762 - THE1C-int LTR MaLR 0 1580 965 1353 168 27 42 chr6 141405785 141406047 -47873507 + THE1-int LTR MaLR 715 972 -608 * 245 50 0 25 chr6 141406058 141406098 -47873456 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 2559 133 2 20 chr6 141406099 141406506 -47873048 - THE1C-int LTR MaLR -1178 402 3 1631 166 61 25 chr6 141406509 141406870 -47872684 - THE1C LTR MaLR -1 374 1 241 217 0 0 chr6 141406911 141406957 -47872597 + MSTB2 LTR MaLR 1 46 -411 3779 169 68 18 chr6 141406960 141408050 -47871504 - L1MB3 LINE L1 -129 6054 4912 1333 240 84 0 chr6 141408047 141408430 -47871124 + L1ME2 LINE L1 5741 6155 -9 * 256 349 31 51 chr6 141408953 141409148 -47870406 - L3b LINE CR1 -47 1536 1346 567 262 11 75 chr6 141409299 141409486 -47870068 - MLT1I LTR MaLR -2 407 233 300 331 100 31 chr6 141410786 141411076 -47868478 + L2 LINE L2 2430 2739 -575 280 267 171 9 chr6 141414427 141414532 -47865022 + L2 LINE L2 3191 3312 -1 24 0 0 0 chr6 141415234 141415258 -47864296 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr6 141415333 141415357 -47864197 + AT_rich Low_complexity Low_complexity 1 24 0 280 261 11 23 chr6 141415934 141416022 -47863532 + MIR SINE MIR 176 262 0 481 220 7 7 chr6 141416140 141416281 -47863273 + CT-rich Low_complexity Low_complexity 2 142 0 211 250 74 56 chr6 141418508 141418616 -47860938 + L2 LINE L2 3139 3248 -65 479 307 58 16 chr6 141418693 141418882 -47860672 + MIR SINE MIR 63 259 -3 35 63 0 0 chr6 141419046 141419109 -47860445 + AT_rich Low_complexity Low_complexity 1 63 0 239 288 80 56 chr6 141420378 141420503 -47859051 + MER5A DNA MER1_type 6 133 -56 22 35 0 0 chr6 141423652 141423681 -47855873 + AT_rich Low_complexity Low_complexity 1 29 0 354 336 49 0 chr6 141424400 141424543 -47855011 - MIR3 SINE MIR -21 187 38 261 337 81 29 chr6 141424559 141424731 -47854823 - MIR SINE MIR -36 226 46 394 285 46 15 chr6 141425196 141425326 -47854228 - L2 LINE L2 0 3272 3139 31 44 0 0 chr6 141425335 141425380 -47854174 + AT_rich Low_complexity Low_complexity 1 45 0 932 291 204 35 chr6 141425543 141426368 -47853186 - L2 LINE L2 -358 2956 1993 437 288 68 80 chr6 141426677 141426927 -47852627 + MIR SINE MIR 1 247 -15 23 54 0 0 chr6 141427300 141427337 -47852217 + AT_rich Low_complexity Low_complexity 1 37 0 272 325 53 9 chr6 141428296 141428410 -47851144 - L2 LINE L2 -5 3308 3190 296 267 11 22 chr6 141430252 141430342 -47849212 + MER5A DNA MER1_type 70 158 -31 189 0 0 0 chr6 141430410 141430431 -47849123 + (CA)n Simple_repeat Simple_repeat 2 22 0 1750 148 0 22 chr6 141430449 141430727 -47848827 - AluSx SINE Alu -38 274 3 1848 194 31 3 chr6 141430751 141431106 -47848448 - MLT1A1 LTR MaLR 0 365 1 267 312 24 24 chr6 141432007 141432132 -47847422 - L3b LINE CR1 -171 1412 1288 22 0 0 0 chr6 141432241 141432263 -47847291 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr6 141432382 141432411 -47847143 + AT_rich Low_complexity Low_complexity 1 29 0 208 300 71 0 chr6 141435097 141435167 -47844387 - MIR3 SINE MIR -30 178 104 751 257 111 21 chr6 141435172 141435460 -47844094 + HAL1 LINE L1 2 315 -2192 21 0 0 0 chr6 141435845 141435866 -47843688 + AT_rich Low_complexity Low_complexity 1 21 0 2051 130 24 0 chr6 141436531 141436824 -47842730 + AluSx SINE Alu 1 300 -12 375 266 18 9 chr6 141436936 141437049 -47842505 - MER94 DNA DNA -20 114 1 343 255 6 0 chr6 141440685 141440789 -47838765 - MIR3 SINE MIR -6 202 97 35 0 0 0 chr6 141441098 141441133 -47838421 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr6 141441252 141441275 -47838279 + AT_rich Low_complexity Low_complexity 1 23 0 442 326 78 30 chr6 141442655 141442986 -47836568 - LTR16C LTR ERVL 0 491 145 2426 304 168 32 chr6 141443214 141445017 -47834537 + L2 LINE L2 1273 3312 -1 1979 144 0 7 chr6 141445239 141445538 -47834016 + AluSx SINE Alu 3 299 -13 463 294 0 0 chr6 141446247 141446373 -47833181 - L2 LINE L2 -8 3305 3180 2163 86 0 0 chr6 141446821 141447101 -47832453 + AluSg SINE Alu 1 280 -30 303 28 0 0 chr6 141447104 141447140 -47832414 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 1731 138 42 8 chr6 141447833 141448167 -47831387 - MER4A LTR ERV1 0 664 261 566 138 11 11 chr6 141448167 141448261 -47831293 - MER4A LTR ERV1 -566 98 5 4355 162 22 26 chr6 141448498 141449475 -47830079 + L1MA9 LINE L1 5115 6088 -224 21 36 0 0 chr6 141450788 141450816 -47828738 + AT_rich Low_complexity Low_complexity 1 28 0 237 83 0 0 chr6 141451283 141451319 -47828235 + (CA)n Simple_repeat Simple_repeat 2 37 0 361 242 50 0 chr6 141452551 141452650 -47826904 - MER117 DNA MER1_type -49 148 45 25 51 0 0 chr6 141454198 141454237 -47825317 + AT_rich Low_complexity Low_complexity 1 39 0 236 344 43 11 chr6 141454432 141454525 -47825029 - MIR SINE MIR -76 186 91 21 0 0 0 chr6 141454805 141454826 -47824728 + AT_rich Low_complexity Low_complexity 1 21 0 564 244 125 103 chr6 141456681 141457209 -47822345 + L2 LINE L2 2766 3307 -6 379 241 46 3 chr6 141459182 141459382 -47820172 - Charlie4 DNA MER1_type -1683 278 21 2857 156 45 18 chr6 141459427 141460238 -47819316 + L1MA6 LINE L1 5374 6298 -2 366 236 176 14 chr6 141461116 141461264 -47818290 - MIR SINE MIR -56 206 35 22 35 0 0 chr6 141461678 141461707 -47817847 + AT_rich Low_complexity Low_complexity 1 29 0 362 120 13 0 chr6 141461849 141461924 -47817630 + (TC)n Simple_repeat Simple_repeat 1 76 0 556 320 22 36 chr6 141463042 141463320 -47816234 - MLT1K LTR MaLR -1 587 314 381 102 0 0 chr6 141464107 141464166 -47815388 + (GA)n Simple_repeat Simple_repeat 2 60 0 756 136 41 9 chr6 141465223 141465444 -47814110 + CT-rich Low_complexity Low_complexity 1 228 0 909 90 28 22 chr6 141465451 141465629 -47813925 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1172 33 11 33 chr6 141465666 141465849 -47813705 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1017 180 137 35 chr6 141465853 141466108 -47813446 - AluJo SINE Alu -31 281 1 224 205 0 0 chr6 141466157 141466196 -47813358 + (TG)n Simple_repeat Simple_repeat 2 40 0 33 43 0 0 chr6 141466587 141466634 -47812920 + AT_rich Low_complexity Low_complexity 1 47 0 1854 117 8 4 chr6 141467591 141467892 -47811662 + AluSq SINE Alu 19 320 0 31 107 0 0 chr6 141470001 141470123 -47809431 + AT_rich Low_complexity Low_complexity 1 122 0 181 97 0 0 chr6 141470243 141470274 -47809280 + (TTTTG)n Simple_repeat Simple_repeat 5 180 0 524 110 0 0 chr6 141470274 141470348 -47809206 - AluSg/x SINE Alu -1 315 212 259 253 13 0 chr6 141471227 141471306 -47808248 + MER116 DNA Mariner 1 80 0 2112 144 33 25 chr6 141471446 141471807 -47807747 + THE1B LTR MaLR 1 364 0 9552 116 18 4 chr6 141471807 141473166 -47806388 + THE1B-int LTR MaLR 1 1378 -202 814 91 0 9 chr6 141473169 141473279 -47806275 + THE1B LTR MaLR 256 364 0 300 111 111 0 chr6 141473546 141473600 -47805954 + L1MA4A LINE L1 5723 5782 -518 1678 176 21 5 chr6 141473640 141474071 -47805483 + L1MA4A LINE L1 5782 6280 -23 241 374 9 9 chr6 141475981 141476088 -47803466 - L2 LINE L2 -10 3303 3197 23 33 0 0 chr6 141477943 141477973 -47801581 + AT_rich Low_complexity Low_complexity 1 30 0 255 342 117 40 chr6 141478066 141478288 -47801266 - MIR SINE MIR -6 256 18 21 57 0 0 chr6 141484092 141484127 -47795427 + AT_rich Low_complexity Low_complexity 1 35 0 1238 277 55 62 chr6 141484581 141485127 -47794427 - MLT1F LTR MaLR 0 542 1 211 221 78 26 chr6 141485284 141485361 -47794193 + MIR SINE MIR 109 189 -73 314 310 51 74 chr6 141485733 141485949 -47793605 + L3 LINE CR1 1028 1238 -339 195 292 26 71 chr6 141485946 141485982 -47793572 + MIR SINE MIR 50 86 -176 * 1816 144 70 25 chr6 141485982 141486337 -47793217 + THE1C LTR MaLR 1 371 -4 195 292 26 71 chr6 141486337 141486413 -47793141 + MIR SINE MIR 86 157 -105 23 0 0 0 chr6 141487221 141487244 -47792310 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr6 141487450 141487477 -47792077 + AT_rich Low_complexity Low_complexity 1 27 0 532 256 199 26 chr6 141487539 141487925 -47791629 + HAL1b LINE L1 282 734 -614 235 274 0 0 chr6 141487937 141487999 -47791555 - MIR SINE MIR -10 252 191 29 47 0 0 chr6 141488328 141488371 -47791183 + AT_rich Low_complexity Low_complexity 1 43 0 2176 129 0 0 chr6 141488372 141488667 -47790887 - AluSq SINE Alu -18 295 1 2086 157 0 0 chr6 141489412 141489724 -47789830 + AluSx SINE Alu 1 312 0 303 271 56 56 chr6 141489877 141490021 -47789533 + L1MEc LINE L1 1007 1150 -5457 941 196 48 150 chr6 141490632 141491092 -47788462 + L1MC4 LINE L1 7225 7637 -405 42214 39 24 2 chr6 141491092 141497110 -47782444 + L1PA3 LINE L1 4 6155 0 377 271 28 14 chr6 141497244 141497388 -47782166 + L1MC4 LINE L1 7748 7893 -149 2018 142 3 0 chr6 141497683 141497979 -47781575 - AluSx SINE Alu -15 297 1 447 224 21 56 chr6 141497981 141498167 -47781387 + L1MEc LINE L1 1800 1959 -4467 633 279 26 0 chr6 141498169 141498323 -47781231 - MER58B DNA MER1_type -1 340 183 555 283 116 0 chr6 141498529 141498702 -47780852 + MIR SINE MIR 59 251 -11 28 71 0 0 chr6 141499495 141499551 -47780003 + AT_rich Low_complexity Low_complexity 1 56 0 288 257 74 71 chr6 141499645 141500011 -47779543 - HAL1 LINE L1 -135 2372 2006 534 243 46 0 chr6 141500039 141500191 -47779363 - HAL1 LINE L1 -966 1541 1383 1213 233 3 9 chr6 141500233 141500550 -47779004 - L1 LINE L1 -852 5294 4980 795 184 0 0 chr6 141501457 141501598 -47777956 - L1P LINE L1 -1165 4981 4841 * 5357 126 16 8 chr6 141501596 141502452 -47777102 + L1PA16 LINE L1 5304 6166 0 398 324 82 45 chr6 141502526 141502770 -47776784 - HAL1 LINE L1 -1216 1291 1039 4151 118 0 12 chr6 141502929 141503580 -47775974 + HERVH LTR ERV1 2345 2987 -4726 921 128 20 0 chr6 141503574 141503722 -47775832 + HERVH LTR ERV1 3140 3290 -4423 * 3356 108 8 2 chr6 141503712 141504210 -47775344 + HERVH LTR ERV1 3492 3992 -3721 4228 139 22 1 chr6 141504213 141504862 -47774692 + HERVH LTR ERV1 4488 5149 -2564 2401 117 33 41 chr6 141504859 141505458 -47774096 + HERVH LTR ERV1 5597 7713 0 * 1387 166 107 63 chr6 141505458 141505887 -47773667 + LTR7 LTR ERV1 1 448 -2 315 85 0 0 chr6 141506834 141506881 -47772673 + (CA)n Simple_repeat Simple_repeat 2 48 0 312 279 160 9 chr6 141507255 141507291 -47772263 - L1ME3A LINE L1 -79 6091 6062 207 100 0 0 chr6 141507291 141507321 -47772233 + (CATA)n Simple_repeat Simple_repeat 2 31 0 312 279 160 9 chr6 141507321 141507609 -47771945 - L1ME3A LINE L1 -108 6062 5655 2196 97 7 3 chr6 141507659 141507992 -47771562 - AluY SINE Alu 0 336 3 318 226 126 63 chr6 141508727 141508886 -47770668 - L1ME4a LINE L1 -18 6103 5935 349 306 98 28 chr6 141508917 141509172 -47770382 - L1ME4a LINE L1 -248 5873 5601 2350 66 0 0 chr6 141509512 141509835 -47769719 - AluY SINE Alu 0 323 1 2220 120 0 0 chr6 141510149 141510458 -47769096 - AluSx SINE Alu -3 309 1 256 229 119 51 chr6 141513150 141513268 -47766286 + L2 LINE L2 3134 3259 -54 21 82 0 0 chr6 141513482 141513531 -47766023 + AT_rich Low_complexity Low_complexity 1 49 0 26 50 0 0 chr6 141514717 141514757 -47764797 + AT_rich Low_complexity Low_complexity 1 40 0 296 388 0 0 chr6 141515561 141515677 -47763877 + CT-rich Low_complexity Low_complexity 2 117 0 234 156 0 0 chr6 141515687 141515732 -47763822 + C-rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr6 141518727 141518756 -47760798 + AT_rich Low_complexity Low_complexity 1 29 0 229 278 135 32 chr6 141519151 141519403 -47760151 + L1MC4 LINE L1 7537 7814 -228 1819 129 42 0 chr6 141519403 141519713 -47759841 - L1PA13 LINE L1 -4 6159 5837 572 246 53 6 chr6 141521317 141521488 -47758066 - L1ME3A LINE L1 -45 6125 5947 23 54 0 0 chr6 141521965 141522002 -47757552 + AT_rich Low_complexity Low_complexity 1 37 0 29 28 0 0 chr6 141522201 141522237 -47757317 + AT_rich Low_complexity Low_complexity 1 36 0 2195 126 0 0 chr6 141522431 141522732 -47756822 + AluSq SINE Alu 1 301 -12 315 280 28 47 chr6 141522793 141522900 -47756654 + L2 LINE L2 3154 3258 -14 467 323 6 6 chr6 141523149 141523316 -47756238 - L1ME1 LINE L1 -46 6120 5954 6300 49 3 1 chr6 141523333 141524111 -47755443 - L1PA7 LINE L1 -3 6151 5373 12405 100 6 2 chr6 141524111 141525887 -47753667 - L1PA7 LINE L1 -1142 5004 3222 7459 84 11 0 chr6 141525885 141526927 -47752627 + L1PA7 LINE L1 2166 3218 -2928 * 1076 195 73 133 chr6 141526959 141527410 -47752144 - L1ME1 LINE L1 -290 5876 5453 264 359 76 0 chr6 141527458 141527589 -47751965 + MIR SINE MIR 5 145 -117 210 193 0 0 chr6 141527681 141527738 -47751816 + (TG)n Simple_repeat Simple_repeat 2 58 0 1581 126 48 132 chr6 141527743 141528100 -47751454 + MER7A DNA MER2_type 21 345 -1 21 0 0 0 chr6 141529111 141529132 -47750422 + AT_rich Low_complexity Low_complexity 1 21 0 1875 167 52 0 chr6 141529286 141529615 -47749939 + MER7A DNA MER2_type 2 345 -1 472 237 38 70 chr6 141529764 141529950 -47749604 - MER104 DNA MER2_type 0 180 1 260 309 15 0 chr6 141529991 141530059 -47749495 + MIR SINE MIR 83 151 -111 5148 114 25 37 chr6 141530059 141530900 -47748654 - Tigger4(Zombi) DNA MER2_type 0 2731 1901 981 203 0 0 chr6 141530895 141531072 -47748482 - Tigger4(Zombi) DNA MER2_type -2554 177 1 * 325 273 34 88 chr6 141531446 141531651 -47747903 + MIR3 SINE MIR 11 204 -4 230 0 33 0 chr6 141531764 141531794 -47747760 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2170 79 0 0 chr6 141531797 141532076 -47747478 - AluY SINE Alu -32 279 1 471 53 26 13 chr6 141532234 141532310 -47747244 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 24 32 0 0 chr6 141532473 141532504 -47747050 + AT_rich Low_complexity Low_complexity 1 31 0 411 21 0 0 chr6 141532905 141532953 -47746601 + (TG)n Simple_repeat Simple_repeat 1 48 0 1177 198 135 23 chr6 141533102 141533450 -47746104 + MLT1B LTR MaLR 4 390 0 3263 189 48 16 chr6 141533521 141534279 -47745275 - Charlie6 DNA MER1_type 0 3500 2719 441 261 0 0 chr6 141534324 141534416 -47745138 - Charlie6 DNA MER1_type -979 2521 2430 * 1333 307 28 70 chr6 141534413 141535104 -47744450 - Charlie6 DNA MER1_type -2838 662 1 1425 156 107 63 chr6 141535113 141535542 -47744012 + LTR7 LTR ERV1 1 448 -2 3740 92 22 18 chr6 141535544 141536142 -47743412 + HERVH LTR ERV1 1 661 -7052 204 21 83 62 chr6 141536245 141536293 -47743261 + CT-rich Low_complexity Low_complexity 3 51 0 1082 202 111 11 chr6 141536296 141536741 -47742813 - AluJo SINE Alu 0 472 2 224 205 0 0 chr6 141536791 141536830 -47742724 + (TG)n Simple_repeat Simple_repeat 2 40 0 33 43 0 0 chr6 141537221 141537268 -47742286 + AT_rich Low_complexity Low_complexity 1 47 0 1854 117 8 4 chr6 141538225 141538526 -47741028 + AluSq SINE Alu 19 320 0 2080 116 16 7 chr6 141539005 141539308 -47740246 + AluSp SINE Alu 2 307 -6 333 371 48 0 chr6 141539786 141539953 -47739601 - MIR SINE MIR -56 206 32 385 274 13 51 chr6 141540075 141540232 -47739322 - MIR SINE MIR -56 206 56 245 347 74 0 chr6 141541362 141541457 -47738097 + L2 LINE L2 3169 3270 -2 430 299 36 36 chr6 141541470 141541664 -47737890 + MIR SINE MIR 40 233 -29 186 189 0 0 chr6 141541664 141541701 -47737853 + (TA)n Simple_repeat Simple_repeat 1 37 0 361 303 138 9 chr6 141542468 141542686 -47736868 - Charlie8 DNA MER1_type -2143 274 29 270 357 146 49 chr6 141543031 141543359 -47736195 + L2 LINE L2 2913 3272 0 2151 128 0 6 chr6 141543582 141543894 -47735660 - AluSx SINE Alu 0 312 3 401 361 30 12 chr6 141543906 141544075 -47735479 - MIR SINE MIR -71 191 20 444 284 140 26 chr6 141544635 141544899 -47734655 - LTR33A LTR ERVL 0 523 230 20044 50 2 3 chr6 141545787 141549138 -47730416 - L1PA5 LINE L1 0 6154 2806 2588 75 0 0 chr6 141549138 141549487 -47730067 - L1PA5 LINE L1 -3773 2373 2025 851 99 0 0 chr6 141549486 141549597 -47729957 - L1PA5 LINE L1 -6025 121 11 * 493 211 16 16 chr6 141549792 141549915 -47729639 + MER103 DNA DNA 1 123 -43 559 284 134 9 chr6 141550181 141550516 -47729038 + L1ME3 LINE L1 5505 5881 -281 243 196 0 0 chr6 141550714 141550770 -47728784 + L1MC4 LINE L1 6648 6703 -1339 224 59 29 0 chr6 141550793 141550827 -47728727 + (TA)n Simple_repeat Simple_repeat 1 35 0 1824 166 3 10 chr6 141550916 141551230 -47728324 + AluSx SINE Alu 1 312 0 365 360 0 0 chr6 141552448 141552562 -47726992 - MIR3 SINE MIR -7 201 88 350 291 175 21 chr6 141553375 141553564 -47725990 - L3 LINE CR1 -2 1575 1358 2122 117 13 0 chr6 141553969 141554277 -47725277 - AluSx SINE Alu 0 312 1 187 359 0 0 chr6 141554559 141554623 -47724931 + L2 LINE L2 3174 3237 -35 22 0 0 0 chr6 141554623 141554645 -47724909 + AT_rich Low_complexity Low_complexity 1 22 0 786 286 0 5 chr6 141554672 141554861 -47724693 - MIR SINE MIR -63 199 12 236 286 119 0 chr6 141556176 141556260 -47723294 + MIR3 SINE MIR 67 160 -48 1997 133 7 3 chr6 141556593 141556893 -47722661 + AluSx SINE Alu 1 301 -11 2231 181 57 0 chr6 141557224 141557628 -47721926 + MSTB LTR MaLR 1 364 0 1781 168 140 11 chr6 141558140 141558491 -47721063 + MSTD LTR MaLR 1 396 0 408 337 95 21 chr6 141558530 141558720 -47720834 + MIR SINE MIR 4 207 -55 25 31 0 0 chr6 141559448 141559480 -47720074 + AT_rich Low_complexity Low_complexity 1 32 0 909 202 66 123 chr6 141559604 141559723 -47719831 - MLT1A1 LTR MaLR 0 457 333 248 0 31 0 chr6 141559723 141559755 -47719799 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 909 202 66 123 chr6 141559755 141560022 -47719532 - MLT1A1 LTR MaLR -124 333 1 35 0 0 0 chr6 141560269 141560304 -47719250 + AT_rich Low_complexity Low_complexity 1 35 0 2609 136 31 98 chr6 141560528 141560605 -47718949 - L1MA9 LINE L1 -1 6311 6230 1325 149 128 72 chr6 141560605 141560850 -47718704 - MER44D DNA MER2_type -1882 609 379 204 67 0 0 chr6 141560850 141560880 -47718674 + (TCTCTG)n Simple_repeat Simple_repeat 3 32 0 1325 149 128 72 chr6 141560880 141560955 -47718599 - MER44D DNA MER2_type -2112 379 1 2609 136 31 98 chr6 141560955 141561029 -47718525 - L1MA9 LINE L1 -82 6230 6153 243 88 0 0 chr6 141561029 141561063 -47718491 + (TG)n Simple_repeat Simple_repeat 1 34 0 2609 136 31 98 chr6 141561063 141561521 -47718033 - L1MA9 LINE L1 -159 6153 5742 225 211 0 53 chr6 141561527 141561584 -47717970 - L1M3c LINE L1 -5388 753 700 1678 306 96 9 chr6 141561606 141562149 -47717405 - L1M3c LINE L1 -5547 594 5 22 88 0 0 chr6 141562890 141562947 -47716607 + AT_rich Low_complexity Low_complexity 1 57 0 832 294 37 5 chr6 141564267 141564485 -47715069 + MIR SINE MIR 17 241 -21 298 206 29 0 chr6 141565789 141565857 -47713697 + MER94 DNA DNA 3 72 -62 35 0 0 0 chr6 141566129 141566164 -47713390 + AT_rich Low_complexity Low_complexity 1 35 0 1600 243 60 19 chr6 141566280 141566844 -47712710 + MER114 LTR ERV 59 645 -3 6733 63 39 0 chr6 141567126 141568579 -47710975 - L1PA7 LINE L1 -3 6151 4661 2368 84 3 0 chr6 141569258 141569557 -47709997 - AluSp SINE Alu -13 300 1 291 229 16 0 chr6 141570193 141570254 -47709300 + MER94 DNA DNA 72 133 -1 699 244 100 0 chr6 141571342 141571522 -47708032 + MIR SINE MIR 17 214 -48 2106 92 20 20 chr6 141575106 141575401 -47704153 + AluY SINE Alu 1 295 -16 2459 123 8 5 chr6 141575940 141576314 -47703240 + THE1C LTR MaLR 1 375 0 9570 111 35 58 chr6 141576314 141577931 -47701623 + THE1C-int LTR MaLR 1 1580 0 2452 144 3 3 chr6 141577931 141578306 -47701248 + THE1C LTR MaLR 1 375 0 387 186 10 41 chr6 141578775 141578872 -47700682 - L1MB8 LINE L1 -6 6172 6079 26375 164 20 15 chr6 141578873 141582727 -47696827 + ERVL-B1 LTR ERVL 1264 5147 -617 2048 174 9 15 chr6 141582727 141583066 -47696488 - MER1B DNA MER1_type 0 337 1 26375 164 20 15 chr6 141583066 141583673 -47695881 + ERVL-B1 LTR ERVL 5147 5749 -15 1715 214 49 5 chr6 141583681 141584098 -47695456 + MLT2B1 LTR ERVL 1 481 -39 35 83 0 0 chr6 141586228 141586312 -47693242 + AT_rich Low_complexity Low_complexity 1 84 0 557 288 124 51 chr6 141586922 141587246 -47692308 + L1M4 LINE L1 3086 3385 -2761 1858 40 58 0 chr6 141587246 141587472 -47692082 + AluY SINE Alu 63 301 -10 557 288 124 51 chr6 141587472 141587752 -47691802 + L1M4 LINE L1 3385 3734 -2412 714 342 117 36 chr6 141588318 141589353 -47690201 + L2 LINE L2 1728 2846 -468 323 130 0 0 chr6 141589858 141589912 -47689642 - Alu SINE Alu 0 302 249 183 42 0 0 chr6 141590927 141590951 -47688603 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 279 342 17 33 chr6 141591612 141591732 -47687822 + MIR SINE MIR 36 153 -109 184 397 52 6 chr6 141594014 141594188 -47685366 + L2 LINE L2 2796 2977 -337 2324 109 52 3 chr6 141595002 141595349 -47684205 + THE1B LTR MaLR 1 364 0 282 302 172 0 chr6 141596216 141596332 -47683222 + MIR3 SINE MIR 58 193 -15 23 0 0 0 chr6 141596905 141596928 -47682626 + AT_rich Low_complexity Low_complexity 1 23 0 228 298 0 0 chr6 141596941 141596998 -47682556 + (TG)n Simple_repeat Simple_repeat 1 57 0 308 222 0 0 chr6 141597204 141597258 -47682296 + L2 LINE L2 3211 3264 -8 269 237 13 26 chr6 141598023 141598099 -47681455 + GA-rich Low_complexity Low_complexity 2 76 0 180 0 0 0 chr6 141599585 141599605 -47679949 + (TTA)n Simple_repeat Simple_repeat 2 21 0 535 357 27 18 chr6 141600546 141600770 -47678784 - MIR SINE MIR -24 238 13 286 231 67 48 chr6 141601411 141601515 -47678039 - L2 LINE L2 0 3313 3208 233 331 97 8 chr6 141601514 141601638 -47677916 - L3 LINE CR1 -196 1381 1247 * 384 111 0 111 chr6 141602130 141602211 -47677343 - MADE1 DNA Mariner 0 80 9 333 93 0 19 chr6 141602203 141602257 -47677297 + MADE1 DNA Mariner 28 80 0 * 1077 178 11 0 chr6 141602303 141602488 -47677066 + MER2 DNA MER2_type 23 209 -136 21 36 0 0 chr6 141603434 141603462 -47676092 + AT_rich Low_complexity Low_complexity 1 28 0 739 251 16 11 chr6 141603824 141604011 -47675543 + MER5A DNA MER1_type 1 188 -1 483 283 10 10 chr6 141604529 141604660 -47674894 + MIR SINE MIR 1 134 -74 928 169 59 110 chr6 141604986 141605323 -47674231 + MER33 DNA MER1_type 5 324 0 2746 97 12 5 chr6 141605415 141605817 -47673737 + L1PA13 LINE L1 5756 6160 -3 310 228 53 0 chr6 141606373 141606487 -47673067 + (TA)n Simple_repeat Simple_repeat 1 120 0 378 0 0 0 chr6 141606509 141606551 -47673003 + (TA)n Simple_repeat Simple_repeat 1 42 0 215 294 140 35 chr6 141607436 141607579 -47671975 + L2 LINE L2 3114 3271 -1 182 349 0 16 chr6 141607951 141608014 -47671540 - L2 LINE L2 -2 3270 3209 21 36 0 0 chr6 141609270 141609298 -47670256 + AT_rich Low_complexity Low_complexity 1 28 0 190 250 0 58 chr6 141609298 141609350 -47670204 + L2 LINE L2 3242 3290 -23 278 315 90 22 chr6 141609963 141610141 -47669413 - MIR SINE MIR -71 191 2 348 347 8 8 chr6 141610905 141611029 -47668525 + MER5A DNA MER1_type 7 130 -59 40 0 0 0 chr6 141611981 141612021 -47667533 + AT_rich Low_complexity Low_complexity 1 40 0 180 77 0 0 chr6 141612029 141612055 -47667499 + (TAAAAA)n Simple_repeat Simple_repeat 4 29 0 250 286 57 80 chr6 141612951 141613126 -47666428 - MER5A DNA MER1_type -2 187 17 583 250 7 33 chr6 141613295 141613447 -47666107 - MER5B DNA MER1_type -30 148 1 425 166 276 6 chr6 141613583 141613722 -47665832 + MER5A DNA MER1_type 6 188 -1 231 300 56 56 chr6 141614191 141614281 -47665273 - L2 LINE L2 -47 3225 3136 373 301 34 14 chr6 141614474 141614620 -47664934 - L2 LINE L2 -557 2757 2609 380 237 62 103 chr6 141614728 141614952 -47664602 + L1ME4a LINE L1 5654 5868 -253 227 394 52 44 chr6 141615846 141616095 -47663459 - L2 LINE L2 -97 3175 2925 276 30 0 0 chr6 141617843 141617876 -47661678 + (TTG)n Simple_repeat Simple_repeat 3 35 0 1655 168 0 21 chr6 141617880 141618160 -47661394 - AluJo SINE Alu -38 274 1 661 208 32 63 chr6 141618670 141618891 -47660663 + L2 LINE L2 3100 3313 0 197 373 13 0 chr6 141618898 141618973 -47660581 + MIR SINE MIR 45 120 -142 558 151 19 0 chr6 141618975 141619081 -47660473 - L1MB3 LINE L1 -2 6181 6074 1046 194 22 0 chr6 141619105 141619337 -47660217 - L1MB3 LINE L1 -9 6174 5938 888 182 0 34 chr6 141619338 141619514 -47660040 - AluJb SINE Alu -86 226 57 2267 170 61 24 chr6 141619514 141619974 -47659580 - L1MB3 LINE L1 -260 5923 5447 24 0 0 0 chr6 141621028 141621052 -47658502 + AT_rich Low_complexity Low_complexity 1 24 0 544 289 79 55 chr6 141621471 141621942 -47657612 + HAL1 LINE L1 1109 1590 -917 1614 163 182 14 chr6 141622981 141623344 -47656210 + MSTA LTR MaLR 5 428 0 250 261 0 33 chr6 141623380 141623472 -47656082 - L1MC4 LINE L1 -1339 6703 6615 235 247 0 72 chr6 141623393 141623490 -47656064 + L1MC4 LINE L1 6615 6704 -1338 * 218 203 31 16 chr6 141623491 141623555 -47655999 + (TA)n Simple_repeat Simple_repeat 2 66 0 2140 110 0 17 chr6 141623885 141624184 -47655370 - AluSc SINE Alu -15 294 1 967 196 149 50 chr6 141624608 141624909 -47654645 + MLT1A1 LTR MaLR 2 332 -33 763 174 136 51 chr6 141626505 141626740 -47652814 + MIR SINE MIR 8 262 0 846 129 0 0 chr6 141627235 141627359 -47652195 + AluSg/x SINE Alu 166 289 -21 582 252 131 27 chr6 141627394 141627616 -47651938 + MIR SINE MIR 18 262 0 21 36 0 0 chr6 141627653 141627681 -47651873 + AT_rich Low_complexity Low_complexity 1 28 0 2239 101 7 0 chr6 141628164 141628470 -47651084 + AluSq SINE Alu 1 308 -5 226 357 164 25 chr6 141628896 141629140 -47650414 - L2 LINE L2 -189 3083 2806 499 337 45 0 chr6 141632220 141632419 -47647135 + MLT1K LTR MaLR 2 209 -379 405 54 0 0 chr6 141632486 141632542 -47647012 + (TG)n Simple_repeat Simple_repeat 2 57 0 641 297 24 9 chr6 141632601 141632813 -47646741 + MLT1K LTR MaLR 374 588 0 261 240 33 8 chr6 141634090 141634211 -47645343 + (TA)n Simple_repeat Simple_repeat 1 124 0 26 0 0 0 chr6 141634966 141634992 -47644562 + AT_rich Low_complexity Low_complexity 1 26 0 614 222 132 53 chr6 141635253 141635442 -47644112 + MIR SINE MIR 13 216 -46 1282 320 105 25 chr6 141635475 141636397 -47643157 + L2 LINE L2 2307 3305 -8 186 103 0 0 chr6 141637011 141637040 -47642514 + (A)n Simple_repeat Simple_repeat 1 29 0 356 289 96 15 chr6 141637790 141637925 -47641629 - MIR SINE MIR -59 203 58 21 0 0 0 chr6 141638655 141638676 -47640878 + AT_rich Low_complexity Low_complexity 1 21 0 1912 159 0 0 chr6 141638865 141639167 -47640387 + AluJb SINE Alu 1 302 -10 1776 156 11 0 chr6 141640893 141641176 -47638378 - AluJb SINE Alu -26 286 1 24 32 0 0 chr6 141642778 141642809 -47636745 + AT_rich Low_complexity Low_complexity 1 31 0 277 336 127 35 chr6 141643259 141643488 -47636066 - MIR SINE MIR 0 262 13 240 35 0 0 chr6 141643749 141643778 -47635776 + (GA)n Simple_repeat Simple_repeat 1 29 0 614 253 122 67 chr6 141643822 141644316 -47635238 + LTR33A LTR ERVL 1 521 -2 222 37 0 0 chr6 141644626 141644653 -47634901 + (GA)n Simple_repeat Simple_repeat 2 28 0 457 337 23 17 chr6 141648442 141648614 -47630940 - MIR SINE MIR -42 220 48 2342 86 0 3 chr6 141648877 141649180 -47630374 - AluSc SINE Alu -4 305 4 293 325 33 33 chr6 141649911 141650062 -47629492 - L3 LINE CR1 -67 1510 1360 2012 104 24 3 chr6 141650547 141650844 -47628710 - THE1C LTR MaLR -72 303 1 210 309 79 100 chr6 141650887 141651178 -47628376 + L2 LINE L2 2969 3253 -19 237 108 0 0 chr6 141651185 141651222 -47628332 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 2442 69 0 0 chr6 141653373 141653676 -47625878 - AluY SINE Alu -8 303 1 210 118 0 0 chr6 141653687 141653721 -47625833 + (T)n Simple_repeat Simple_repeat 1 34 0 1156 107 44 11 chr6 141654156 141654470 -47625084 - THE1C LTR MaLR 0 375 1 232 289 124 10 chr6 141654693 141654790 -47624764 - MIR SINE MIR -1 261 154 2027 143 0 6 chr6 141654795 141655110 -47624444 - AluSq SINE Alu 0 313 1 184 328 35 43 chr6 141655960 141656076 -47623478 + MER5B DNA MER1_type 46 160 -18 208 419 0 0 chr6 141655966 141656059 -47623495 - MER5A DNA MER1_type -50 139 47 1964 153 0 0 chr6 141656654 141656954 -47622600 + AluSx SINE Alu 1 300 -12 404 233 10 0 chr6 141657008 141657111 -47622443 - MIR SINE MIR 0 262 159 1421 264 84 7 chr6 141657114 141657583 -47621971 - MLT1H LTR MaLR -2 547 12 376 279 139 23 chr6 141657589 141657718 -47621836 - MIR SINE MIR -98 164 21 185 188 0 130 chr6 141657785 141657854 -47621700 - L2 LINE L2 -791 2523 2464 226 298 156 34 chr6 141657971 141658176 -47621378 - L2 LINE L2 -952 2362 2133 21 0 0 0 chr6 141658340 141658361 -47621193 + AT_rich Low_complexity Low_complexity 1 21 0 445 284 54 23 chr6 141658681 141658912 -47620642 + L1ME LINE L1 5299 5541 -621 219 331 22 52 chr6 141659649 141659785 -47619769 - L3b LINE CR1 -86 1497 1366 248 226 0 0 chr6 141661698 141661751 -47617803 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 285 262 57 47 chr6 141661979 141662258 -47617296 - L1ME4a LINE L1 -3 6118 5837 1091 243 52 23 chr6 141662485 141663116 -47616438 + L1M4c LINE L1 2025 2679 -3703 332 64 0 0 chr6 141663116 141663163 -47616391 + MADE1 DNA Mariner 1 47 -33 303 309 48 0 chr6 141663163 141663370 -47616184 + L1M4c LINE L1 2105 2321 -4063 245 139 0 0 chr6 141663371 141663414 -47616140 + MADE1 DNA Mariner 38 80 0 9242 229 30 27 chr6 141663414 141663530 -47616024 + L1M4c LINE L1 2678 2792 -3590 3787 136 49 26 chr6 141663530 141663651 -47615903 + MER39 LTR ERV1 1 118 -589 2779 22 0 0 chr6 141663651 141663967 -47615587 - AluYb8 SINE Alu -2 316 1 3787 136 49 26 chr6 141663967 141664536 -47615018 + MER39 LTR ERV1 118 707 0 9242 229 30 27 chr6 141664536 141667133 -47612421 + L1M4c LINE L1 2792 5400 -982 1039 133 15 0 chr6 141667173 141667368 -47612186 - L1P5 LINE L1 -699 5457 5260 * 2932 151 46 6 chr6 141667365 141668076 -47611478 + L1PB4 LINE L1 5053 5787 -369 658 90 0 0 chr6 141668084 141668173 -47611381 + L1PA7 LINE L1 9 97 -6364 225 0 0 0 chr6 141668183 141668208 -47611346 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2471 109 8 3 chr6 141668209 141668584 -47610970 + L1PA7 LINE L1 421 797 -5664 * 25175 93 9 11 chr6 141668583 141673097 -47606457 + L1PA7 LINE L1 1965 6469 0 2156 159 3 5 chr6 141673200 141673578 -47605976 + L1PB4 LINE L1 5766 6142 -14 1540 180 0 68 chr6 141674115 141674455 -47605099 + AluJb SINE Alu 1 319 0 243 281 74 59 chr6 141674687 141674822 -47604732 + L2 LINE L2 3177 3313 0 22 0 0 0 chr6 141675737 141675759 -47603795 + AT_rich Low_complexity Low_complexity 1 22 0 375 340 25 25 chr6 141676574 141676603 -47602951 - MIR SINE MIR -69 193 165 1937 169 11 19 chr6 141676603 141676971 -47602583 + MER47A DNA MER2_type 1 365 -1 375 340 25 25 chr6 141676971 141677103 -47602451 - MIR SINE MIR -96 166 32 200 163 0 20 chr6 141677275 141677324 -47602230 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 448 281 110 0 chr6 141677368 141677514 -47602040 - MIR SINE MIR -61 201 40 299 309 25 0 chr6 141677540 141677621 -47601933 + MER5A DNA MER1_type 16 98 -91 201 343 167 19 chr6 141677749 141677857 -47601697 + L2 LINE L2 3134 3257 -15 2009 162 0 0 chr6 141678062 141678365 -47601189 - AluSx SINE Alu -9 303 1 293 339 107 6 chr6 141678805 141678973 -47600581 - MIR SINE MIR -6 256 72 250 311 29 19 chr6 141679171 141679274 -47600280 - L2 LINE L2 -31 3282 3179 5301 191 37 14 chr6 141679317 141680887 -47598667 + L1MC2 LINE L1 4737 6342 -2 288 362 64 25 chr6 141681714 141681996 -47597558 - L2 LINE L2 -1292 2022 1730 197 280 120 0 chr6 141682267 141682342 -47597212 - L2 LINE L2 -1 3312 3229 184 253 53 63 chr6 141682470 141682565 -47596989 - L2 LINE L2 -280 2992 2899 1647 250 135 20 chr6 141683215 141683816 -47595738 + L1ME2 LINE L1 5483 6152 -12 302 259 47 80 chr6 141683860 141684072 -47595482 + L1MC4 LINE L1 7837 8041 -1 287 329 213 19 chr6 141684370 141684586 -47594968 + MIR SINE MIR 5 262 0 2158 133 0 0 chr6 141686252 141686560 -47592994 + AluSx SINE Alu 1 308 -4 1366 267 36 29 chr6 141686833 141687309 -47592245 - MLT1D LTR MaLR -22 483 5 2043 111 62 0 chr6 141687489 141687777 -47591777 - AluSx SINE Alu -6 306 1 296 306 33 16 chr6 141688190 141688311 -47591243 - L2 LINE L2 0 3313 3191 5495 52 3 1 chr6 141690026 141690704 -47588850 - L1PA7 LINE L1 -4 6150 5472 207 69 0 0 chr6 141692191 141692220 -47587334 + (TG)n Simple_repeat Simple_repeat 2 30 0 327 306 15 0 chr6 141692455 141692585 -47586969 - MER20B DNA MER1_type -4 215 81 2476 83 0 0 chr6 141692982 141693282 -47586272 + AluSg SINE Alu 1 300 -10 356 306 96 35 chr6 141693980 141694241 -47585313 - L3b LINE CR1 -171 1412 1136 180 397 70 6 chr6 141694443 141694599 -47584955 - L2 LINE L2 -182 3090 2925 369 315 155 14 chr6 141694674 141694893 -47584661 - MIR SINE MIR -10 252 3 41 0 0 0 chr6 141694996 141695037 -47584517 + AT_rich Low_complexity Low_complexity 1 41 0 215 345 73 71 chr6 141695102 141695606 -47583948 - L2 LINE L2 -685 2629 2125 237 288 88 8 chr6 141697551 141697676 -47581878 + MIR SINE MIR 120 254 -8 416 172 1 1 chr6 141697800 141697876 -47581678 - MIR SINE MIR -30 178 102 2237 59 21 17 chr6 141699686 141699976 -47579578 + AluY SINE Alu 1 291 -20 1219 174 29 126 chr6 141700577 141700991 -47578563 - MLT1A2 LTR MaLR 0 374 1 29 0 0 0 chr6 141701511 141701540 -47578014 + AT_rich Low_complexity Low_complexity 1 29 0 342 0 0 0 chr6 141701680 141701718 -47577836 + (TG)n Simple_repeat Simple_repeat 2 39 0 297 278 113 68 chr6 141701831 141701964 -47577590 - L2 LINE L2 0 3272 3134 24 32 0 0 chr6 141703203 141703234 -47576320 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr6 141703386 141703419 -47576135 + AT_rich Low_complexity Low_complexity 1 33 0 396 296 139 34 chr6 141703706 141704058 -47575496 - MLT1G LTR MaLR 0 590 202 1747 206 27 22 chr6 141704461 141704873 -47574681 - MLT2D LTR ERVL 0 414 1 235 222 46 56 chr6 141705125 141705233 -47574321 + LTR67 LTR ERVL 435 541 -16 421 160 9 193 chr6 141705799 141706011 -47573543 + L1MB7 LINE L1 6012 6184 0 277 94 57 0 chr6 141706784 141706837 -47572717 + GA-rich Low_complexity Low_complexity 5 60 0 315 85 0 0 chr6 141706924 141706971 -47572583 + (TC)n Simple_repeat Simple_repeat 2 48 0 230 118 118 0 chr6 141708406 141708457 -47571097 - L1PA15 LINE L1 0 6165 6109 1571 183 43 14 chr6 141708562 141708911 -47570643 + L1MB3 LINE L1 5823 6181 -2 23 0 0 0 chr6 141709740 141709763 -47569791 + AT_rich Low_complexity Low_complexity 1 23 0 191 103 26 0 chr6 141710057 141710096 -47569458 + (TA)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr6 141710542 141710570 -47568984 + AT_rich Low_complexity Low_complexity 1 28 0 314 216 142 68 chr6 141710579 141710741 -47568813 - MIR SINE MIR -56 206 33 21 36 0 0 chr6 141713031 141713059 -47566495 + AT_rich Low_complexity Low_complexity 1 28 0 1927 130 58 0 chr6 141714325 141714618 -47564936 - AluSx SINE Alu -2 310 1 273 356 11 27 chr6 141714894 141715082 -47564472 + L2 LINE L2 2473 2657 -657 186 335 86 33 chr6 141715269 141715421 -47564133 + L2 LINE L2 2901 3060 -212 26 30 0 0 chr6 141716250 141716283 -47563271 + AT_rich Low_complexity Low_complexity 1 33 0 1482 232 31 28 chr6 141717661 141718053 -47561501 - MLT1D LTR MaLR 0 505 113 285 364 74 13 chr6 141718192 141718443 -47561111 - L2 LINE L2 -234 3038 2776 270 56 0 0 chr6 141718553 141718589 -47560965 + (A)n Simple_repeat Simple_repeat 1 36 0 346 290 68 61 chr6 141718922 141719085 -47560469 - MIR SINE MIR -66 142 30 240 382 0 16 chr6 141719136 141719259 -47560295 - MIR SINE MIR -140 122 2 1050 98 12 46 chr6 141719893 141720066 -47559488 - L1PA12 LINE L1 -339 5829 5663 186 103 0 0 chr6 141720445 141720474 -47559080 + (CA)n Simple_repeat Simple_repeat 1 29 0 2311 72 7 7 chr6 141721020 141721313 -47558241 - AluY SINE Alu -18 293 1 647 278 35 43 chr6 141722894 141723124 -47556430 - MIR SINE MIR -27 235 8 184 225 70 42 chr6 141725077 141725148 -47554406 - L2 LINE L2 -74 3239 3167 22 0 0 0 chr6 141726647 141726669 -47552885 + AT_rich Low_complexity Low_complexity 1 22 0 400 239 24 19 chr6 141727518 141727705 -47551849 + MLT1J2 LTR MaLR 267 407 -2 611 260 142 28 chr6 141727721 141728152 -47551402 - L1ME4a LINE L1 -117 6004 5525 294 330 68 11 chr6 141728972 141729163 -47550391 + LTR67 LTR ERVL 356 557 0 328 304 51 68 chr6 141729301 141729653 -47549901 - L1ME4a LINE L1 -3600 2546 2201 376 259 24 128 chr6 141730004 141730293 -47549261 - HsTC2 DNA Tc2 -1593 305 47 1385 230 32 48 chr6 141730700 141731074 -47548480 - MLT1E3 LTR MaLR -4 620 253 432 279 37 7 chr6 141731089 141731225 -47548329 - MLT1E3 LTR MaLR -514 140 1 22 56 0 0 chr6 141731544 141731580 -47547974 + AT_rich Low_complexity Low_complexity 1 36 0 279 283 28 19 chr6 141732580 141732686 -47546868 - MLT1K LTR MaLR -200 388 282 507 279 15 45 chr6 141732860 141733061 -47546493 + L2 LINE L2 1855 2049 -1265 759 284 159 46 chr6 141733062 141733622 -47545932 + L2 LINE L2 2694 3313 0 254 218 36 146 chr6 141733627 141733792 -47545762 - MLT1K LTR MaLR -128 460 314 12840 181 17 14 chr6 141734232 141736876 -47542678 + L1PA13 LINE L1 2354 5004 -1142 5900 106 7 0 chr6 141736870 141737722 -47541832 + L1PA10 LINE L1 5314 6171 0 * 5204 140 34 1 chr6 141737722 141738843 -47540711 + L1PA13 LINE L1 5005 6160 -3 37967 84 11 6 chr6 141739104 141745213 -47534341 + L1PA6 LINE L1 11 6141 -13 1776 247 12 27 chr6 141745230 141745508 -47534046 - L1 LINE L1 -2691 3455 3174 2361 87 3 0 chr6 141745508 141745817 -47533737 - AluSx SINE Alu -2 310 1 1776 247 12 27 chr6 141745817 141746124 -47533430 - L1 LINE L1 -2972 3174 2879 * 6177 184 87 14 chr6 141746122 141746874 -47532680 + L1PA16 LINE L1 3464 4160 -2006 288 0 0 0 chr6 141746874 141746906 -47532648 + (CA)n Simple_repeat Simple_repeat 2 33 0 6177 184 87 14 chr6 141746906 141748644 -47530910 + L1PA16 LINE L1 4160 6157 -9 1553 242 28 38 chr6 141748994 141749387 -47530167 + MLT1E2 LTR MaLR 235 623 -3 2452 244 51 19 chr6 141749396 141749889 -47529665 - L1M4 LINE L1 -1480 4666 4137 231 36 0 0 chr6 141749889 141749917 -47529637 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 2452 244 51 19 chr6 141749917 141750211 -47529343 - L1M4 LINE L1 -2009 4137 3854 1942 155 10 0 chr6 141750970 141751279 -47528275 - AluSx SINE Alu 0 312 1 2094 164 37 35 chr6 141751511 141752059 -47527495 - MLT2A2 LTR ERVL 0 554 2 1738 88 92 28 chr6 141752452 141752736 -47526818 - Tigger4(Zombi) DNA MER2_type 0 2731 2430 12648 150 39 17 chr6 141752752 141753046 -47526508 - Tigger4(Zombi) DNA MER2_type -468 2263 1977 2405 115 25 3 chr6 141753046 141753402 -47526152 - THE1B LTR MaLR 0 364 1 12648 150 39 17 chr6 141753402 141755316 -47524238 - Tigger4(Zombi) DNA MER2_type -754 1977 7 192 97 0 0 chr6 141755316 141755347 -47524207 + (TC)n Simple_repeat Simple_repeat 2 32 0 240 86 0 0 chr6 141755351 141755386 -47524168 + (CA)n Simple_repeat Simple_repeat 2 36 0 2619 108 31 5 chr6 141755428 141755818 -47523736 + MLT2A1 LTR ERVL 1 400 -44 21 0 0 0 chr6 141755818 141755839 -47523715 + AT_rich Low_complexity Low_complexity 1 21 0 210 71 0 0 chr6 141755843 141755871 -47523683 + (TA)n Simple_repeat Simple_repeat 1 28 0 231 186 0 0 chr6 141755871 141755930 -47523624 + LTR66 LTR ERVL 399 457 -153 * 366 89 0 18 chr6 141755897 141755953 -47523601 + MLT2A2 LTR ERVL 399 453 0 247 171 12 49 chr6 141756260 141756342 -47523212 + L1MEc LINE L1 74 152 -6244 281 167 51 0 chr6 141756373 141756451 -47523103 + L1MC5 LINE L1 7118 7199 -762 1269 234 97 26 chr6 141756507 141757015 -47522539 + L1MC5 LINE L1 7305 7848 -113 230 339 52 0 chr6 141757062 141757177 -47522377 + L1ME3A LINE L1 6016 6136 -34 473 309 0 0 chr6 141757178 141757304 -47522250 + FLAM_A SINE Alu 1 126 -7 240 257 0 14 chr6 141757323 141757393 -47522161 - L1ME LINE L1 -5679 391 323 461 165 24 45 chr6 141757431 141757589 -47521965 - MER20 DNA MER1_type -1 218 28 228 67 0 0 chr6 141757945 141757975 -47521579 + (CA)n Simple_repeat Simple_repeat 1 30 0 293 281 101 42 chr6 141758010 141758248 -47521306 - HAL1b LINE L1 -998 350 99 21 57 0 0 chr6 141758626 141758661 -47520893 + AT_rich Low_complexity Low_complexity 1 35 0 366 23 0 0 chr6 141758819 141758862 -47520692 + (TG)n Simple_repeat Simple_repeat 2 44 0 2233 128 0 0 chr6 141759221 141759533 -47520021 - AluSx SINE Alu 0 312 1 487 248 81 56 chr6 141759982 141760129 -47519425 - L1MEd LINE L1 -3519 2610 2468 2456 65 0 3 chr6 141760129 141760439 -47519115 - AluY SINE Alu -2 309 1 487 248 81 56 chr6 141760439 141760650 -47518904 - L1MEd LINE L1 -3661 2468 2243 443 291 24 36 chr6 141760663 141760828 -47518726 + MIR SINE MIR 2 164 -98 270 303 89 55 chr6 141760867 141761138 -47518416 - MER68 LTR ERV1 -57 505 226 238 158 0 0 chr6 141761516 141761554 -47518000 + Alu SINE Alu 1 38 -95 319 313 28 50 chr6 141761685 141761867 -47517687 + L1MEc LINE L1 1310 1487 -4909 1833 134 11 4 chr6 141761869 141762186 -47517368 + AluY SINE Alu 3 321 0 1167 220 17 0 chr6 141762235 141762471 -47517083 + MLT1C LTR MaLR 1 240 -227 437 296 124 60 chr6 141762474 141762958 -47516596 - L1MEd LINE L1 -5092 1027 513 6165 33 4 0 chr6 141763749 141764486 -47515068 + L1PA5 LINE L1 5413 6152 -2 294 247 71 24 chr6 141765689 141765774 -47513780 + L2 LINE L2 3225 3313 0 344 324 0 27 chr6 141766162 141766273 -47513281 + MIR SINE MIR 40 147 -115 189 94 0 0 chr6 141767408 141767440 -47512114 + (TTTAG)n Simple_repeat Simple_repeat 3 34 0 267 252 165 35 chr6 141769977 141770092 -47509462 + L2 LINE L2 3183 3312 -1 361 53 18 18 chr6 141770163 141770220 -47509334 + (TA)n Simple_repeat Simple_repeat 2 58 0 270 0 0 0 chr6 141770219 141770249 -47509305 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 2832 188 8 4 chr6 141770265 141770782 -47508772 - MER45B DNA AcHobo -3 1037 519 1627 233 15 6 chr6 141770791 141771117 -47508437 - MER45B DNA AcHobo -711 329 1 185 0 40 0 chr6 141771471 141771496 -47508058 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 227 250 0 18 chr6 141771498 141771554 -47508000 - MER112 DNA MER1_type -191 69 15 497 328 28 6 chr6 141771829 141772006 -47507548 - MIR SINE MIR -56 206 26 262 321 208 9 chr6 141773103 141773315 -47506239 + L2 LINE L2 1995 2248 -1066 252 315 177 32 chr6 141773315 141773626 -47505928 - L2 LINE L2 0 3313 2958 239 308 127 69 chr6 141773640 141773900 -47505654 + L2 LINE L2 2242 2516 -798 2461 64 3 3 chr6 141774236 141774547 -47505007 - AluY SINE Alu 0 311 1 1899 263 79 16 chr6 141774612 141775220 -47504334 + L2 LINE L2 2187 2832 -482 342 305 249 12 chr6 141775235 141775484 -47504070 + L2 LINE L2 184 491 -2823 21 0 0 0 chr6 141775498 141775519 -47504035 + AT_rich Low_complexity Low_complexity 1 21 0 1777 154 0 30 chr6 141775993 141776291 -47503263 + AluSx SINE Alu 14 302 -10 259 289 70 35 chr6 141776881 141776995 -47502559 + MIR SINE MIR 95 212 -50 1433 131 21 0 chr6 141777487 141777724 -47501830 - L1MA4 LINE L1 -438 5862 5621 1390 144 58 0 chr6 141777737 141778014 -47501540 + L1MA4 LINE L1 6008 6300 0 35 95 0 0 chr6 141778420 141778525 -47501029 + AT_rich Low_complexity Low_complexity 1 105 0 346 312 239 5 chr6 141778992 141779197 -47500357 - MIR SINE MIR -7 255 3 366 206 0 0 chr6 141779198 141779266 -47500288 + MIR3 SINE MIR 125 192 -16 229 287 21 43 chr6 141779702 141779796 -47499758 - MIR3 SINE MIR -13 195 104 529 241 66 15 chr6 141779888 141780025 -47499529 + MIR SINE MIR 119 262 0 456 275 50 45 chr6 141780531 141780731 -47498823 - MIR SINE MIR -50 212 12 204 158 0 0 chr6 141781033 141781071 -47498483 + A-rich Low_complexity Low_complexity 1 38 0 343 329 71 32 chr6 141781695 141781850 -47497704 + MIR3 SINE MIR 45 205 -3 403 278 28 0 chr6 141783518 141783626 -47495928 - MER63 DNA MER1_type -277 785 675 883 232 11 0 chr6 141783941 141784131 -47495423 + HERVL40 LTR ERVL 5339 5530 0 1563 266 52 11 chr6 141784134 141784611 -47494943 + LTR40a LTR ERVL 4 500 -19 2582 49 3 0 chr6 141784643 141784948 -47494606 + AluY SINE Alu 1 306 -5 25 0 0 0 chr6 141785355 141785380 -47494174 + AT_rich Low_complexity Low_complexity 1 25 0 275 307 59 0 chr6 141786368 141786469 -47493085 - L2 LINE L2 -8 3305 3199 2125 72 0 0 chr6 141786915 141787191 -47492363 - L1PA8 LINE L1 0 6172 5897 335 296 40 24 chr6 141788155 141788280 -47491274 + L2 LINE L2 2547 2673 -641 481 337 76 50 chr6 141788317 141788801 -47490753 + L2 LINE L2 2216 2712 -602 1817 143 26 0 chr6 141789764 141790037 -47489517 - AluSx SINE Alu -19 293 14 310 251 86 28 chr6 141790480 141790608 -47488946 - MIR SINE MIR -70 138 2 312 339 8 8 chr6 141790828 141790946 -47488608 + HAL1b LINE L1 492 609 -739 275 170 0 0 chr6 141791012 141791065 -47488489 + L1MA7 LINE L1 6230 6282 -9 21 0 0 0 chr6 141791066 141791087 -47488467 + AT_rich Low_complexity Low_complexity 1 21 0 371 344 77 49 chr6 141791531 141791921 -47487633 + L1MC/D LINE L1 5327 5727 -2081 2167 78 0 69 chr6 141793157 141793509 -47486045 + AluSq SINE Alu 1 331 0 24 0 0 0 chr6 141793842 141793866 -47485688 + AT_rich Low_complexity Low_complexity 1 24 0 224 211 0 0 chr6 141794491 141794529 -47485025 + polypurine Low_complexity Low_complexity 3 40 0 2208 106 24 0 chr6 141795914 141796206 -47483348 - AluSp SINE Alu -14 299 1 338 298 35 26 chr6 141796315 141796429 -47483125 - MIR3 SINE MIR -35 173 59 198 0 0 0 chr6 141796899 141796921 -47482633 + (A)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr6 141797514 141797537 -47482017 + AT_rich Low_complexity Low_complexity 1 23 0 249 108 0 0 chr6 141797642 141797679 -47481875 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 57 0 0 chr6 141799091 141799126 -47480428 + AT_rich Low_complexity Low_complexity 1 35 0 390 333 32 13 chr6 141799996 141800152 -47479402 - MER5B DNA MER1_type 0 178 20 424 163 133 114 chr6 141800152 141800256 -47479298 - MER5A DNA MER1_type -4 185 75 2497 72 0 3 chr6 141800256 141800563 -47478991 - AluSp SINE Alu -7 306 1 424 163 133 114 chr6 141800563 141800624 -47478930 - MER5A DNA MER1_type -114 75 17 351 0 0 0 chr6 141800714 141800753 -47478801 + (CA)n Simple_repeat Simple_repeat 1 39 0 205 183 100 0 chr6 141800873 141800933 -47478621 + L2 LINE L2 3206 3271 -1 222 191 43 0 chr6 141801852 141801899 -47477655 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 432 284 126 11 chr6 141801989 141802172 -47477382 + MIR3 SINE MIR 5 208 0 444 229 65 130 chr6 141803000 141803285 -47476269 - MLT1I LTR MaLR -49 360 105 2045 100 0 0 chr6 141803285 141803545 -47476009 + AluSx SINE Alu 34 293 -19 444 229 65 130 chr6 141803545 141803644 -47475910 - MLT1I LTR MaLR -304 105 1 1651 211 8 17 chr6 141805328 141805684 -47473870 - MLT1A1 LTR MaLR -12 353 1 557 218 95 26 chr6 141806511 141806697 -47472857 + MLT1H LTR MaLR 1 240 -309 426 182 138 82 chr6 141806762 141806921 -47472633 + MLT1H LTR MaLR 382 549 0 252 283 53 44 chr6 141807961 141808074 -47471480 + L2 LINE L2 3180 3293 -20 207 146 0 127 chr6 141808362 141808417 -47471137 + L2 LINE L2 3266 3313 0 182 345 81 0 chr6 141808837 141808924 -47470630 + MIR SINE MIR 2 95 -167 411 312 89 28 chr6 141808943 141809190 -47470364 - LTR33 LTR ERVL -55 466 205 227 230 14 95 chr6 141809368 141809442 -47470112 + MIR SINE MIR 84 141 -67 2333 98 0 0 chr6 141809509 141809806 -47469748 - AluY SINE Alu -14 297 1 396 224 0 13 chr6 141810435 141810511 -47469043 - MIR3 SINE MIR -19 189 115 1135 91 4 30 chr6 141813651 141813884 -47465670 + (GAAA)n Simple_repeat Simple_repeat 2 228 0 189 195 0 0 chr6 141814421 141814462 -47465092 + C-rich Low_complexity Low_complexity 3 43 0 353 296 114 78 chr6 141814462 141814674 -47464880 + L1M2 LINE L1 897 1131 -5718 207 69 0 0 chr6 141814674 141814703 -47464851 + (CCG)n Simple_repeat Simple_repeat 3 31 0 353 296 114 78 chr6 141814703 141814875 -47464679 + L1M2 LINE L1 1131 1295 -5554 23 33 0 0 chr6 141814965 141814995 -47464559 + AT_rich Low_complexity Low_complexity 1 30 0 256 308 55 0 chr6 141818340 141818431 -47461123 - MIR SINE MIR -97 165 70 29 0 0 0 chr6 141820857 141820886 -47458668 + AT_rich Low_complexity Low_complexity 1 29 0 406 286 24 77 chr6 141821212 141821380 -47458174 + MIR3 SINE MIR 20 178 -30 281 258 113 41 chr6 141822600 141822697 -47456857 - L3 LINE CR1 -11 1566 1463 226 308 26 43 chr6 141823390 141823507 -47456047 - MIR SINE MIR -30 232 118 571 238 0 136 chr6 141824147 141824353 -47455201 + MER5B DNA MER1_type 1 178 0 188 379 181 9 chr6 141829663 141829779 -47449775 - L2 LINE L2 0 3272 3137 336 312 99 5 chr6 141830603 141830756 -47448798 - MIR SINE MIR -59 203 39 2336 80 10 3 chr6 141831000 141831300 -47448254 + AluSc SINE Alu 1 302 -7 1427 208 7 0 chr6 141831514 141831798 -47447756 + AluJb SINE Alu 12 297 -15 327 353 143 16 chr6 141834010 141834449 -47445105 + L2 LINE L2 2810 3304 -9 304 337 0 0 chr6 141835085 141835168 -47444386 + (TG)n Simple_repeat Simple_repeat 2 84 0 208 206 41 21 chr6 141836242 141836339 -47443215 + (TA)n Simple_repeat Simple_repeat 2 100 0 601 271 40 76 chr6 141837309 141837637 -47441917 + L2 LINE L2 2830 3145 -168 * 686 254 65 22 chr6 141837619 141837851 -47441703 + MIR SINE MIR 21 262 0 452 240 41 41 chr6 141837846 141837992 -47441562 + L2 LINE L2 3168 3313 0 * 207 0 0 0 chr6 141838109 141838132 -47441422 + (TA)n Simple_repeat Simple_repeat 1 23 0 35 54 0 0 chr6 141838781 141838837 -47440717 + AT_rich Low_complexity Low_complexity 1 56 0 764 154 53 64 chr6 141840373 141840561 -47438993 + MER5A DNA MER1_type 1 186 -3 195 184 0 0 chr6 141841577 141841615 -47437939 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 731 241 0 0 chr6 141841622 141841767 -47437787 - AluJb SINE Alu -31 281 137 359 348 32 32 chr6 141842315 141842473 -47437081 - L2 LINE L2 0 3272 3115 629 236 70 0 chr6 141843998 141844155 -47435399 - MLT1H LTR MaLR 0 549 382 855 237 15 32 chr6 141844189 141844443 -47435111 - MLT1H LTR MaLR -331 224 6 560 242 16 8 chr6 141844686 141844810 -47434744 - L2 LINE L2 -1 3312 3188 399 245 4 30 chr6 141847915 141848058 -47431496 - L1MC4a LINE L1 -301 5863 5716 848 257 49 13 chr6 141848143 141848369 -47431185 + MIR SINE MIR 18 251 -11 352 273 101 25 chr6 141848413 141848611 -47430943 - L1MC4a LINE L1 -2191 5617 5405 1302 87 5 10 chr6 141848833 141848851 -47430703 - L1P4 LINE L1 -497 5677 5660 3341 107 32 0 chr6 141848851 141849347 -47430207 - L1PA11 LINE L1 -1 6173 5662 * 7244 38 7 1 chr6 141849344 141850769 -47428785 - L1PA5 LINE L1 -2 6152 4716 1302 87 5 10 chr6 141849347 141850947 -47428607 - L1P4 LINE L1 -514 5660 5484 242 210 48 32 chr6 141851061 141851123 -47428431 - L2 LINE L2 -4 3268 3206 2227 135 15 76 chr6 141851625 141852085 -47427469 - MSTB1 LTR MaLR 0 432 1 1800 97 50 0 chr6 141853590 141853848 -47425706 - THE1C LTR MaLR 0 375 105 288 209 0 0 chr6 141904351 141904442 -47375112 + (TA)n Simple_repeat Simple_repeat 1 91 0 2003 92 28 21 chr6 141904474 141904758 -47374796 - AluSc SINE Alu -23 286 1 264 59 0 0 chr6 141904766 141904800 -47374754 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 953 254 213 33 chr6 141904802 141905581 -47373973 - L2 LINE L2 -12 3301 2370 595 190 128 28 chr6 141905577 141905756 -47373798 + MIR SINE MIR 50 246 -16 * 198 284 60 0 chr6 141909381 141909448 -47370106 - MIR SINE MIR -74 134 64 1894 168 74 36 chr6 141910728 141910912 -47368642 + Tigger2a DNA MER2_type 2 177 -2531 2331 99 0 0 chr6 141910912 141911205 -47368349 - AluSc SINE Alu -16 293 1 1894 168 74 36 chr6 141911205 141911437 -47368117 + Tigger2a DNA MER2_type 177 434 0 1147 176 35 31 chr6 141911652 141911910 -47367644 + MER33 DNA MER1_type 1 251 -73 639 191 0 16 chr6 141911914 141912040 -47367514 - FLAM_C SINE Alu -19 124 1 427 122 40 0 chr6 141912040 141912114 -47367440 + MER33 DNA MER1_type 242 318 -6 441 263 83 8 chr6 141912174 141912307 -47367247 + MIR SINE MIR 49 191 -71 340 280 21 0 chr6 141912359 141912452 -47367102 - MER5A DNA MER1_type -84 105 11 954 154 240 0 chr6 141912822 141913030 -47366524 - Tigger2 DNA MER2_type 0 2718 2461 3168 155 142 9 chr6 141913084 141913741 -47365813 - Tigger2 DNA MER2_type -1974 744 1 599 250 37 12 chr6 141914882 141915046 -47364508 + FRAM SINE Alu 1 168 -8 690 160 0 0 chr6 141916128 141916234 -47363320 + FRAM SINE Alu 26 131 -45 192 338 50 7 chr6 141916341 141916480 -47363074 - L2 LINE L2 -697 2617 2473 227 374 138 3 chr6 141916561 141916930 -47362624 - L2 LINE L2 -2179 1135 717 381 315 79 51 chr6 141916931 141917109 -47362445 + MER5A DNA MER1_type 3 185 -4 3100 62 59 5 chr6 141917543 141917964 -47361590 - MLT2A1 LTR ERVL 0 444 1 4468 209 94 9 chr6 141918327 141920247 -47359307 - L1MB4 LINE L1 -50 6130 4053 22 0 0 0 chr6 141921255 141921277 -47358277 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr6 141921348 141921373 -47358181 + AT_rich Low_complexity Low_complexity 1 25 0 513 324 107 14 chr6 141922321 141922611 -47356943 + L2 LINE L2 2044 2360 -954 1415 97 111 0 chr6 141924874 141925081 -47354473 - MER30 DNA MER1_type 0 230 1 348 286 0 22 chr6 141925970 141926061 -47353493 + L2 LINE L2 3182 3270 -2 191 357 122 0 chr6 141926262 141926360 -47353194 - MIR SINE MIR -68 140 31 22 0 0 0 chr6 141928415 141928437 -47351117 + AT_rich Low_complexity Low_complexity 1 22 0 742 284 184 40 chr6 141930790 141931329 -47348225 - L2 LINE L2 -3 3310 2677 267 191 191 0 chr6 141931385 141931448 -47348106 - MIR SINE MIR -155 107 33 236 188 328 0 chr6 141931480 141931544 -47348010 - L2 LINE L2 -663 2651 2567 24 0 0 0 chr6 141932608 141932632 -47346922 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 141932737 141932758 -47346796 + AT_rich Low_complexity Low_complexity 1 21 0 208 341 0 11 chr6 141933467 141933555 -47345999 + MIR SINE MIR 4 90 -172 216 118 29 0 chr6 141933622 141933656 -47345898 + MIR SINE MIR 87 121 -141 2084 91 0 0 chr6 141935044 141935307 -47344247 - AluSx SINE Alu -16 296 34 669 276 37 22 chr6 141935683 141935951 -47343603 + L1ME LINE L1 5469 5740 -381 1104 264 65 65 chr6 141936007 141936292 -47343262 + L1MC/D LINE L1 4875 5159 -1293 1690 116 8 23 chr6 141936292 141936550 -47343004 - AluSg SINE Alu -22 288 35 1104 264 65 65 chr6 141936550 141936821 -47342733 + L1MC/D LINE L1 5159 5429 -1023 1847 152 23 13 chr6 141936821 141937130 -47342424 + AluJb SINE Alu 1 312 0 1104 264 65 65 chr6 141937130 141937414 -47342140 + L1MC/D LINE L1 5429 5709 -743 515 194 90 15 chr6 141937613 141937747 -47341807 + LTR25 LTR ERV1 220 363 -431 300 233 11 33 chr6 141937780 141937870 -47341684 + MER61E LTR ERV1 77 164 -405 1100 136 22 11 chr6 141937892 141938076 -47341478 + MER61E LTR ERV1 341 526 -43 465 243 71 0 chr6 141938191 141938331 -47341223 + L1MC4 LINE L1 7893 8042 0 5932 149 35 52 chr6 141938688 141938971 -47340583 + Tigger3b DNA MER2_type 1 287 -2741 1783 132 35 3 chr6 141938971 141939258 -47340296 - AluJo SINE Alu -16 296 1 5932 149 35 52 chr6 141939258 141940226 -47339328 + Tigger3b DNA MER2_type 287 1231 0 2584 222 48 15 chr6 141940404 141941004 -47338550 + MLT1E2 LTR MaLR 2 621 -5 586 169 21 49 chr6 141941834 141941976 -47337578 - MER5C DNA MER1_type 0 324 187 21 0 0 0 chr6 141942153 141942174 -47337380 + AT_rich Low_complexity Low_complexity 1 21 0 2346 89 0 0 chr6 141942488 141942791 -47336763 - AluSq SINE Alu -10 303 1 21 57 0 0 chr6 141942825 141942860 -47336694 + AT_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr6 141943211 141943246 -47336308 + AT_rich Low_complexity Low_complexity 1 35 0 29 28 0 0 chr6 141943323 141943359 -47336195 + AT_rich Low_complexity Low_complexity 1 36 0 2805 127 0 0 chr6 141943415 141943832 -47335722 + Tigger1 DNA MER2_type 566 982 -1436 13563 157 39 28 chr6 141943848 141946473 -47333081 + L1M1 LINE L1 1313 3908 -3657 2106 124 159 5 chr6 141946473 141946844 -47332710 + MSTA LTR MaLR 1 428 0 13563 157 39 28 chr6 141946844 141947442 -47332112 + L1M1 LINE L1 3908 4498 -3067 2165 105 0 55 chr6 141947442 141947767 -47331787 + AluSg SINE Alu 3 309 -1 13563 157 39 28 chr6 141947767 141949572 -47329982 + L1M1 LINE L1 4498 6411 -1154 513 0 0 0 chr6 141949572 141949629 -47329925 + (CA)n Simple_repeat Simple_repeat 2 58 0 13563 157 39 28 chr6 141949629 141949734 -47329820 + L1M1 LINE L1 6411 6513 -1052 2088 143 124 11 chr6 141949748 141950126 -47329428 - MSTA LTR MaLR -6 422 2 2277 98 28 22 chr6 141950126 141950484 -47329070 + L1MA2 LINE L1 5945 6304 0 4248 149 58 11 chr6 141950517 141951262 -47328292 + Tigger1 DNA MER2_type 1639 2418 0 657 250 41 18 chr6 141951262 141951482 -47328072 + L1ME2 LINE L1 2212 2436 -3960 2341 72 16 10 chr6 141951483 141951822 -47327732 + AluSg SINE Alu 1 341 0 864 244 8 26 chr6 141951857 141952091 -47327463 + L1MC4a LINE L1 7572 7801 -7 291 189 126 0 chr6 141952088 141952183 -47327371 + L1M1 LINE L1 6541 6647 -918 * 1929 212 62 42 chr6 141952291 141952891 -47326663 + L1ME2 LINE L1 5324 5935 -298 1152 240 18 52 chr6 141952886 141953286 -47326268 + L1ME2 LINE L1 5769 6154 -10 * 1945 146 4 0 chr6 141953289 141953594 -47325960 - AluSx SINE Alu 0 306 1 504 346 60 5 chr6 141953937 141954154 -47325400 - MIR SINE MIR -28 234 6 23 33 0 0 chr6 141956633 141956663 -47322891 + AT_rich Low_complexity Low_complexity 1 30 0 291 363 69 31 chr6 141957035 141957457 -47322097 + L2 LINE L2 1764 2201 -1113 318 296 52 20 chr6 141957522 141957638 -47321916 + MIR SINE MIR 28 146 -63 227 366 32 48 chr6 141957776 141957962 -47321592 + L2 LINE L2 2440 2622 -692 527 180 11 0 chr6 141957976 141958065 -47321489 - 5S rRNA rRNA -31 90 1 181 386 90 30 chr6 141958108 141958375 -47321179 + L2 LINE L2 2695 2977 -337 667 273 39 19 chr6 141959257 141959513 -47320041 + MIR SINE MIR 2 262 0 2087 107 10 0 chr6 141960119 141960408 -47319146 - AluSx SINE Alu -20 292 1 26 30 0 0 chr6 141960769 141960802 -47318752 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr6 141961162 141961190 -47318364 + AT_rich Low_complexity Low_complexity 1 28 0 2201 120 0 0 chr6 141961812 141962113 -47317441 + AluSx SINE Alu 1 301 -11 2233 105 0 3 chr6 141962115 141962410 -47317144 + AluSx SINE Alu 1 294 -18 258 103 17 35 chr6 141962710 141962768 -47316786 + (TA)n Simple_repeat Simple_repeat 1 57 0 1849 144 93 12 chr6 141963030 141963363 -47316191 + MER46B DNA MER2_type 2 236 0 206 284 84 53 chr6 141963370 141963465 -47316089 - MIR3 SINE MIR -102 106 9 560 277 74 30 chr6 141963572 141963774 -47315780 - MIR SINE MIR -37 225 15 181 148 19 37 chr6 141963858 141963912 -47315642 + T-rich Low_complexity Low_complexity 1 53 0 185 241 138 0 chr6 141964044 141964102 -47315452 - MIR SINE MIR -13 249 184 290 289 167 17 chr6 141964393 141964573 -47314981 - MIR SINE MIR -50 212 6 2400 167 166 128 chr6 141964637 141965018 -47314536 + L1MC3 LINE L1 6705 7070 -715 392 261 0 23 chr6 141965018 141965106 -47314448 + MLT1F1 LTR MaLR 40 125 -442 2400 167 166 128 chr6 141965106 141965509 -47314045 + L1MC3 LINE L1 7070 7609 -176 672 203 13 0 chr6 141965514 141965667 -47313887 - L1MA10 LINE L1 0 6334 6180 21 0 0 0 chr6 141965675 141965696 -47313858 + AT_rich Low_complexity Low_complexity 1 21 0 417 155 23 139 chr6 141965727 141965803 -47313751 - L1MA9 LINE L1 -294 6018 5961 1746 168 0 7 chr6 141965803 141966088 -47313466 - AluJo SINE Alu -23 289 7 417 155 23 139 chr6 141966088 141966140 -47313414 - L1MA9 LINE L1 -351 5961 5905 * 768 184 34 48 chr6 141966123 141966173 -47313381 + L1MC3 LINE L1 7582 7631 -154 1870 141 138 21 chr6 141966173 141966556 -47312998 + MSTA LTR MaLR 1 428 0 768 184 34 48 chr6 141966556 141966712 -47312842 + L1MC3 LINE L1 7631 7785 0 213 239 60 45 chr6 141967337 141967404 -47312150 - L2 LINE L2 -8 3305 3238 657 167 42 8 chr6 141968333 141968453 -47311101 + Tigger3(Golem) DNA MER2_type 31 154 -2875 * 1133 196 39 0 chr6 141968449 141968653 -47310901 + Tigger3(Golem) DNA MER2_type 2817 3028 -1 2414 71 0 3 chr6 141968836 141969146 -47310408 + AluY SINE Alu 1 309 -2 1341 166 44 50 chr6 141969632 141969951 -47309603 + MER33 DNA MER1_type 8 324 0 1927 148 17 0 chr6 141971239 141971537 -47308017 - AluSq SINE Alu -10 303 1 753 226 133 12 chr6 141972101 141972349 -47307205 - L1ME3A LINE L1 -11 6159 5882 1463 138 0 9 chr6 141972425 141972650 -47306904 - MER4A LTR ERV1 0 664 442 2827 101 6 91 chr6 141972669 141972899 -47306655 - MER4A LTR ERV1 -200 464 299 1714 168 7 3 chr6 141972899 141973184 -47306370 - AluSq SINE Alu -27 286 1 2827 101 6 91 chr6 141973184 141973460 -47306094 - MER4A LTR ERV1 -365 299 1 700 216 60 12 chr6 141973461 141973628 -47305926 - L1ME3A LINE L1 -367 5795 5621 441 0 0 0 chr6 141973758 141973807 -47305747 + (CA)n Simple_repeat Simple_repeat 2 50 0 1001 237 100 6 chr6 141973826 141974155 -47305399 - L1ME3A LINE L1 -540 5622 5263 194 309 129 48 chr6 141974187 141974559 -47304995 + L2 LINE L2 2227 2628 -686 5527 62 24 5 chr6 141977058 141977810 -47301744 + MER4E LTR ERV1 1 766 0 2150 141 0 6 chr6 141979582 141979895 -47299659 + AluSx SINE Alu 1 311 -1 214 125 50 0 chr6 141980455 141980495 -47299059 + CT-rich Low_complexity Low_complexity 2 43 0 2070 176 203 27 chr6 141984175 141984733 -47294821 - MER67B LTR ERV1 0 661 6 960 235 125 42 chr6 141984986 141985394 -47294160 + L1M3e LINE L1 1089 1530 -5500 5103 131 56 48 chr6 141985587 141985804 -47293750 + L1MA6 LINE L1 5182 5396 -904 1657 155 32 7 chr6 141985804 141986088 -47293466 + AluJo SINE Alu 1 291 -21 5103 131 56 48 chr6 141986088 141986272 -47293282 + L1MA6 LINE L1 5396 5577 -723 1727 122 108 7 chr6 141986272 141986550 -47293004 + AluSg SINE Alu 1 306 -4 5103 131 56 48 chr6 141986550 141987161 -47292393 + L1MA6 LINE L1 5577 6204 -96 235 158 105 0 chr6 141987163 141987220 -47292334 + L1MA5 LINE L1 6238 6300 0 221 274 0 16 chr6 141988004 141988066 -47291488 + CT-rich Low_complexity Low_complexity 2 62 0 1968 246 107 51 chr6 141988302 141988377 -47291177 + L1MA4A LINE L1 -723 4294966642 -6960 2165 110 14 0 chr6 141988377 141988668 -47290886 - AluSq SINE Alu -18 295 1 1968 246 107 51 chr6 141988668 141989473 -47290081 + L1MA4A LINE L1 -654 206 -6100 2457 239 97 34 chr6 141989473 141989772 -47289782 + L1MA4A LINE L1 975 1254 -5128 2092 119 12 44 chr6 141989772 141990091 -47289463 + AluSg SINE Alu 2 310 0 2457 239 97 34 chr6 141990091 141991272 -47288282 + L1MA4A LINE L1 1254 2286 -4096 2048 125 0 4 chr6 141991272 141991553 -47288001 + AluSx SINE Alu 1 280 -32 2457 239 97 34 chr6 141991553 141991873 -47287681 + L1MA4A LINE L1 2286 2585 -3797 387 0 0 0 chr6 141991873 141991916 -47287638 + (TG)n Simple_repeat Simple_repeat 2 44 0 243 0 0 0 chr6 141991915 141991942 -47287612 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 2619 46 3 0 chr6 141991942 141992247 -47287307 - AluY SINE Alu -5 306 1 2146 106 10 3 chr6 141992247 141992540 -47287014 - AluSq SINE Alu -18 295 1 6569 208 59 25 chr6 141992552 141993439 -47286115 + L1MA4A LINE L1 3023 3878 -2504 2145 128 120 48 chr6 141993439 141993793 -47285761 - MSTC LTR MaLR 0 428 39 2285 82 0 3 chr6 141993793 141994095 -47285459 + AluY SINE Alu 1 301 0 2145 128 120 48 chr6 141994095 141994138 -47285416 - MSTC LTR MaLR -389 39 1 6569 208 59 25 chr6 141994138 141994479 -47285075 + L1MA4A LINE L1 3878 4206 -2176 2277 101 7 7 chr6 141994479 141994785 -47284769 - AluSc SINE Alu -3 306 1 6569 208 59 25 chr6 141994785 141995757 -47283797 + L1MA4A LINE L1 4206 5520 -862 2155 106 0 0 chr6 141996388 141996671 -47282883 + AluSg SINE Alu 1 283 -27 192 77 0 0 chr6 141996675 141996701 -47282853 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 657 176 4 105 chr6 141997614 141997895 -47281659 + MER31-int LTR ERV1 1313 1686 -3250 265 214 204 48 chr6 141998794 141998897 -47280657 + L2 LINE L2 3179 3297 -16 3870 204 23 68 chr6 141998965 141999326 -47280228 + L1MA4A LINE L1 5501 5877 -662 2245 95 14 3 chr6 141999326 141999622 -47279932 - AluSp SINE Alu -10 303 5 3870 204 23 68 chr6 141999622 141999694 -47279860 + L1MA4A LINE L1 5877 5951 -588 2297 93 7 0 chr6 141999694 141999995 -47279559 - AluSq SINE Alu -10 303 1 3870 204 23 68 chr6 141999995 142000621 -47278933 + L1MA4A LINE L1 5951 6513 -26 555 281 17 17 chr6 142000639 142000877 -47278677 + L1M3e LINE L1 3136 3373 -3009 2068 143 48 40 chr6 142000884 142001256 -47278298 + THE1C LTR MaLR 1 375 0 2790 133 4 17 chr6 142001256 142001475 -47278079 + THE1C-int LTR MaLR 1 221 -1359 3827 122 30 4 chr6 142001475 142002015 -47277539 - MER41C LTR ERV1 0 554 1 2790 133 4 17 chr6 142002015 142002265 -47277289 + THE1C-int LTR MaLR 221 400 -1180 2304 75 38 0 chr6 142002265 142002557 -47276997 + AluY SINE Alu 1 303 -8 2790 133 4 17 chr6 142002557 142002588 -47276966 + THE1C-int LTR MaLR 400 430 -1150 7589 131 9 13 chr6 142003548 142004704 -47274850 + THE1C-int LTR MaLR 430 1580 0 857 159 77 28 chr6 142004704 142004886 -47274668 + THE1C LTR MaLR 1 191 -184 868 161 150 36 chr6 142004889 142005082 -47274472 - MER66B-int LTR ERV1 -5248 1428 1214 785 230 58 11 chr6 142005172 142005346 -47274208 - MER66B-int LTR ERV1 -3574 3102 2921 4634 171 86 56 chr6 142005401 142006468 -47273086 - MER66B-int LTR ERV1 -5563 1113 15 2920 167 43 4 chr6 142006585 142007053 -47272501 - MER66B LTR ERV1 0 486 1 3101 191 21 7 chr6 142007053 142008013 -47271541 - L1MB7 LINE L1 -320 5864 4890 * 8139 205 62 50 chr6 142008009 142010861 -47268693 - L1MA6 LINE L1 0 7719 4904 316 229 14 0 chr6 142010861 142010931 -47268623 - MLT1A2 LTR MaLR -303 71 1 8139 205 62 50 chr6 142010931 142010996 -47268558 - L1MA6 LINE L1 -2815 4904 4841 1911 215 34 3 chr6 142010996 142011350 -47268204 + MLT1A1 LTR MaLR 1 365 0 8139 205 62 50 chr6 142011350 142012444 -47267110 - L1MA6 LINE L1 -2878 4841 3601 2255 113 3 3 chr6 142012444 142012746 -47266808 - AluSc SINE Alu -7 302 1 8139 205 62 50 chr6 142012746 142013274 -47266280 - L1MA6 LINE L1 -4118 3601 3081 2215 120 7 0 chr6 142013477 142013785 -47265769 - AluSg SINE Alu 0 310 1 655 163 23 8 chr6 142013853 142013982 -47265572 + LTR8A LTR ERV1 4 134 -593 1168 96 0 0 chr6 142014033 142014179 -47265375 - AluSg1 SINE Alu -163 146 1 1690 178 76 18 chr6 142014184 142014690 -47264864 + LTR8A LTR ERV1 152 727 0 245 238 62 12 chr6 142014690 142014770 -47264784 - L1MA6 LINE L1 -4577 2988 2905 * 987 222 48 85 chr6 142014757 142014797 -47264757 - L1M4 LINE L1 -4779 2178 2138 2217 92 0 3 chr6 142014797 142015108 -47264446 + AluSg SINE Alu 1 310 0 987 222 48 85 chr6 142015108 142015536 -47264018 - L1M4 LINE L1 -4819 2138 1636 2153 127 3 0 chr6 142015536 142015835 -47263719 - AluSp SINE Alu -13 300 1 987 222 48 85 chr6 142015835 142015904 -47263650 - L1M4 LINE L1 -5321 1636 1566 2327 92 10 10 chr6 142015916 142016221 -47263333 - AluY SINE Alu -6 305 1 1111 188 208 32 chr6 142016224 142016565 -47262989 - L1M4 LINE L1 -5434 1425 1025 1168 72 0 0 chr6 142016567 142016706 -47262848 - AluSq/x SINE Alu -173 139 1 857 107 0 0 chr6 142016706 142016827 -47262727 + MER41B LTR ERV1 515 635 0 399 322 43 29 chr6 142016827 142017034 -47262520 - LTR16C LTR ERVL -135 356 147 2337 98 0 0 chr6 142017964 142018259 -47261295 - AluSx SINE Alu -17 295 1 23 0 0 0 chr6 142018262 142018285 -47261269 + AT_rich Low_complexity Low_complexity 1 23 0 989 127 0 0 chr6 142018394 142018528 -47261026 + AluSc SINE Alu 1 134 -175 2558 59 0 0 chr6 142018528 142018831 -47260723 + AluY SINE Alu 1 303 -8 7589 131 9 13 chr6 142019822 142020978 -47258576 + THE1C-int LTR MaLR 430 1580 0 857 159 77 28 chr6 142020978 142021160 -47258394 + THE1C LTR MaLR 1 191 -184 868 161 150 36 chr6 142021163 142021356 -47258198 - MER66B-int LTR ERV1 -5248 1428 1214 785 230 58 11 chr6 142021446 142021620 -47257934 - MER66B-int LTR ERV1 -3574 3102 2921 4634 171 86 56 chr6 142021675 142022742 -47256812 - MER66B-int LTR ERV1 -5563 1113 15 2892 169 43 4 chr6 142022859 142023327 -47256227 - MER66B LTR ERV1 0 486 1 3101 191 18 7 chr6 142023327 142024280 -47255274 - L1MB7 LINE L1 -320 5864 4901 1921 152 0 0 chr6 142024283 142024593 -47254961 - L1MA6 LINE L1 0 6300 5991 1689 78 87 0 chr6 142024694 142024925 -47254629 - AluSq SINE Alu -62 251 1 617 182 19 13 chr6 142025533 142025687 -47253867 - Charlie5 DNA MER1_type -83 2529 2375 * 970 204 53 15 chr6 142025651 142025916 -47253638 + Zaphod DNA AcHobo 3612 3886 -145 419 191 0 0 chr6 142025916 142025984 -47253570 + MER115 DNA AcHobo 626 693 0 209 248 94 94 chr6 142026240 142026304 -47253250 - MIR SINE MIR -72 136 69 2206 88 3 11 chr6 142026304 142026614 -47252940 + AluSp SINE Alu 2 309 0 209 248 94 94 chr6 142026614 142026665 -47252889 - MIR SINE MIR -138 70 20 1399 278 56 27 chr6 142027329 142027612 -47251942 + L2 LINE L2 2670 2943 -370 1560 105 59 9 chr6 142027612 142027831 -47251723 - MER30 DNA MER1_type 0 230 1 1399 278 56 27 chr6 142027831 142028170 -47251384 + L2 LINE L2 2943 3311 -2 4154 178 57 29 chr6 142028428 142029199 -47250355 - MER54B LTR ERVL 0 793 1 234 0 0 0 chr6 142030213 142030239 -47249315 + (CAA)n Simple_repeat Simple_repeat 2 27 0 24502 74 4 5 chr6 142030305 142033903 -47245651 - L1PA6 LINE L1 -15 6139 2547 2292 78 0 0 chr6 142033903 142034222 -47245332 - AluY SINE Alu 0 324 6 24502 74 4 5 chr6 142034222 142034937 -47244617 - L1PA6 LINE L1 -3607 2547 1832 2008 123 3 35 chr6 142034937 142035253 -47244301 + AluY SINE Alu 1 306 -5 414 171 72 36 chr6 142035463 142035574 -47243980 + MER94 DNA DNA 11 125 -9 385 211 11 0 chr6 142035714 142035809 -47243745 - MER53 DNA DNA -93 96 1 1958 128 29 26 chr6 142037025 142037331 -47242223 - AluSg SINE Alu -3 307 1 26 30 0 0 chr6 142037362 142037395 -47242159 + AT_rich Low_complexity Low_complexity 1 33 0 1635 176 10 41 chr6 142037411 142037706 -47241848 - AluJo SINE Alu -26 286 1 2197 90 0 27 chr6 142037749 142037914 -47241640 - AluSg SINE Alu -17 293 138 2328 103 3 0 chr6 142037914 142038216 -47241338 - AluSp SINE Alu -10 303 1 2197 90 0 27 chr6 142038216 142038351 -47241203 - AluSg SINE Alu -172 138 1 2437 66 7 3 chr6 142039144 142039445 -47240109 - AluY SINE Alu -9 302 1 225 216 93 0 chr6 142039629 142039726 -47239828 + LTR33A LTR ERVL 416 521 -2 2590 214 70 27 chr6 142039998 142040854 -47238700 + L1M4 LINE L1 3527 4419 -1727 195 42 0 0 chr6 142040854 142040878 -47238676 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1963 138 0 0 chr6 142040882 142041158 -47238396 - AluSx SINE Alu -36 276 1 1253 187 3 53 chr6 142041198 142041435 -47238119 + L1M4 LINE L1 4931 5146 -1000 1624 122 0 19 chr6 142041435 142041697 -47237857 - AluY SINE Alu -16 295 39 1253 187 3 53 chr6 142041697 142041817 -47237737 + L1M4 LINE L1 5146 5270 -876 1227 229 91 7 chr6 142041808 142041832 -47237722 + L1MDa LINE L1 2486 2507 -4033 * 2072 127 3 10 chr6 142041832 142042139 -47237415 + AluSg SINE Alu 1 305 -5 1227 229 91 7 chr6 142042139 142042696 -47236858 + L1MDa LINE L1 2507 3123 -3417 * 1335 237 31 111 chr6 142042687 142043254 -47236300 + L1MDa LINE L1 3455 3931 -2609 1690 172 3 10 chr6 142043254 142043544 -47236010 - AluJb SINE Alu -16 296 9 1335 237 31 111 chr6 142043544 142043840 -47235714 + L1MDa LINE L1 3931 4249 -2291 1112 219 111 46 chr6 142043839 142043878 -47235676 + L1MDa LINE L1 1492 1527 -5013 * 5894 69 1 94 chr6 142043878 142044789 -47234765 - LTR12 LTR ERV1 0 826 1 1112 219 111 46 chr6 142044789 142045228 -47234326 + L1MDa LINE L1 1527 2001 -4539 2481 77 0 0 chr6 142045229 142045540 -47234014 + AluY SINE Alu 1 311 0 12320 180 36 14 chr6 142045697 142046141 -47233413 + L1MDa LINE L1 2519 2952 -3588 2174 121 159 5 chr6 142046141 142046512 -47233042 + MSTA LTR MaLR 1 428 0 12320 180 36 14 chr6 142046512 142047108 -47232446 + L1MDa LINE L1 2952 3533 -3007 2199 110 0 55 chr6 142047108 142047435 -47232119 + AluSg SINE Alu 1 309 -1 12320 180 36 14 chr6 142047435 142049203 -47230351 + L1MDa LINE L1 3533 5390 -1150 423 0 0 0 chr6 142049239 142049286 -47230268 + (CA)n Simple_repeat Simple_repeat 2 48 0 313 267 20 0 chr6 142049290 142049391 -47230163 + L1MDa LINE L1 5386 5488 -1052 1970 143 124 11 chr6 142049405 142049783 -47229771 - MSTA LTR MaLR -6 422 2 2250 98 28 22 chr6 142049783 142050141 -47229413 + L1MA2 LINE L1 5945 6304 0 3985 149 58 9 chr6 142050180 142050919 -47228635 + Tigger1 DNA MER2_type 1644 2418 0 583 250 41 18 chr6 142050919 142051139 -47228415 + L1MEc LINE L1 2212 2436 -3960 2291 96 0 10 chr6 142051140 142051442 -47228112 + AluSg SINE Alu 1 299 -11 930 78 0 0 chr6 142051464 142051608 -47227946 + AluSp/q SINE Alu 171 314 0 388 322 80 30 chr6 142052045 142052244 -47227310 - L2 LINE L2 -212 3060 2852 1741 105 94 0 chr6 142052584 142052861 -47226693 + AluSx SINE Alu 1 303 -9 2320 174 34 5 chr6 142053137 142053551 -47226003 - MSTB LTR MaLR 0 426 1 335 277 91 0 chr6 142053968 142054110 -47225444 + L1M4c LINE L1 1515 1875 -868 477 34 0 0 chr6 142054585 142054644 -47224910 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1899 134 14 3 chr6 142054644 142054927 -47224627 - AluSx SINE Alu -23 289 1 182 306 0 0 chr6 142055081 142055130 -47224424 + L2 LINE L2 3259 3307 -6 1876 169 3 28 chr6 142055463 142055782 -47223772 - AluJb SINE Alu -1 311 1 1075 61 8 0 chr6 142055796 142055927 -47223627 - AluSq/x SINE Alu -179 134 3 1890 145 21 0 chr6 142056028 142056318 -47223236 - AluSx SINE Alu -16 296 1 22 0 0 0 chr6 142056506 142056528 -47223026 + AT_rich Low_complexity Low_complexity 1 22 0 335 381 64 28 chr6 142056529 142056747 -47222807 + L2 LINE L2 2853 3078 -194 198 0 0 0 chr6 142057609 142057631 -47221923 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 29 47 0 0 chr6 142057631 142057674 -47221880 + AT_rich Low_complexity Low_complexity 1 43 0 2039 149 3 3 chr6 142057687 142057995 -47221559 + AluSq SINE Alu 3 310 -3 2445 81 0 0 chr6 142058098 142058406 -47221148 - AluY SINE Alu -3 308 1 485 140 280 0 chr6 142058663 142058763 -47220791 + MER41B LTR ERV1 1 128 -507 * 2867 135 30 82 chr6 142058761 142059385 -47220169 + LTR14B LTR ERVK 17 608 0 3004 148 4 4 chr6 142059385 142059899 -47219655 + MER41B LTR ERV1 122 635 0 2240 124 0 6 chr6 142060297 142060611 -47218943 - AluSx SINE Alu 0 312 1 2065 99 4 0 chr6 142060616 142060889 -47218665 - AluSp SINE Alu -39 274 1 25 0 0 0 chr6 142060920 142060945 -47218609 + AT_rich Low_complexity Low_complexity 1 25 0 2560 137 36 7 chr6 142061915 142062331 -47217223 - MSTA LTR MaLR 0 428 1 225 94 0 0 chr6 142062431 142062463 -47217091 + (T)n Simple_repeat Simple_repeat 1 32 0 2562 176 35 20 chr6 142062572 142063123 -47216431 - L1P LINE L1 -5587 559 1 2267 111 3 0 chr6 142063735 142064033 -47215521 - AluSx SINE Alu -13 299 1 2156 109 0 0 chr6 142065402 142065712 -47213842 + AluSp SINE Alu 1 310 0 181 57 57 0 chr6 142065722 142065757 -47213797 + A-rich Low_complexity Low_complexity 4 40 0 1359 113 5 5 chr6 142066405 142066600 -47212954 + AluSg SINE Alu 1 195 -115 425 31 62 0 chr6 142066602 142066667 -47212887 + AluY SINE Alu 65 133 -178 308 287 43 43 chr6 142066809 142066924 -47212630 - MER63A DNA MER1_type 0 210 96 186 43 0 0 chr6 142066979 142067002 -47212552 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 259 104 0 42 chr6 142067005 142067053 -47212501 - MER63A DNA MER1_type -157 53 8 22 0 0 0 chr6 142067418 142067440 -47212114 + AT_rich Low_complexity Low_complexity 1 22 0 2719 167 15 2 chr6 142068375 142068854 -47210700 + MER31A LTR ERV1 1 485 0 21 57 0 0 chr6 142069644 142069679 -47209875 + AT_rich Low_complexity Low_complexity 1 35 0 672 170 41 0 chr6 142069719 142069866 -47209688 - L1MA8 LINE L1 -36 6255 6103 934 123 14 7 chr6 142069870 142070016 -47209538 + AluY SINE Alu 1 147 -164 29 0 0 0 chr6 142070459 142070488 -47209066 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr6 142070561 142070602 -47208952 + AT_rich Low_complexity Low_complexity 1 41 0 2265 96 0 10 chr6 142070697 142071000 -47208554 + AluY SINE Alu 1 300 -11 1493 111 36 0 chr6 142071000 142071253 -47208301 - L1MA8 LINE L1 -182 6109 5848 368 313 90 30 chr6 142072242 142072475 -47207079 - MIR SINE MIR -6 256 10 325 278 0 10 chr6 142073960 142074057 -47205497 - MIR3 SINE MIR -6 202 107 441 374 122 17 chr6 142074644 142074938 -47204616 - L2 LINE L2 -17 3255 2931 237 65 0 0 chr6 142075738 142075769 -47203785 + (T)n Simple_repeat Simple_repeat 1 31 0 192 77 0 0 chr6 142075873 142075899 -47203655 + (A)n Simple_repeat Simple_repeat 1 26 0 2322 65 0 40 chr6 142076306 142076629 -47202925 - AluY SINE Alu -1 310 1 204 40 0 0 chr6 142076709 142076734 -47202820 + (TTG)n Simple_repeat Simple_repeat 3 27 0 22 0 0 0 chr6 142077196 142077218 -47202336 + AT_rich Low_complexity Low_complexity 1 22 0 2688 243 76 10 chr6 142077772 142078576 -47200978 - L1MD2 LINE L1 -10 6743 5887 319 234 11 53 chr6 142078582 142078676 -47200878 + MER2 DNA MER2_type 1 90 -255 1271 218 28 31 chr6 142078708 142078989 -47200565 - L1MD2 LINE L1 -743 5797 5602 2516 58 0 3 chr6 142078989 142079299 -47200255 - AluY SINE Alu -2 309 1 1271 218 28 31 chr6 142079299 142079566 -47199988 - L1MD2 LINE L1 -938 5602 5336 961 245 43 3 chr6 142079611 142079937 -47199617 - L1MD2 LINE L1 -4120 2420 2082 2122 117 3 3 chr6 142080092 142080391 -47199163 + AluSx SINE Alu 1 299 -13 2728 198 47 2 chr6 142080712 142081268 -47198286 - MER67C LTR ERV1 -8 702 122 1094 224 38 44 chr6 142081270 142081609 -47197945 - MER2 DNA MER2_type 0 345 9 396 207 35 9 chr6 142081618 142081734 -47197820 - MER67C LTR ERV1 -591 119 1 2073 96 16 22 chr6 142081987 142082300 -47197254 - AluY SINE Alu 0 311 1 2051 106 14 7 chr6 142082300 142082593 -47196961 - AluSq SINE Alu -18 295 1 2906 200 93 13 chr6 142082593 142083464 -47196090 + L1 LINE L1 2776 3716 -2430 1813 172 27 22 chr6 142083469 142083492 -47196062 + L1 LINE L1 3958 3979 -2167 1942 129 119 55 chr6 142083492 142083849 -47195705 - MSTC LTR MaLR 0 428 40 2287 86 0 0 chr6 142083849 142084148 -47195406 + AluY SINE Alu 3 301 0 1942 129 119 55 chr6 142084148 142084191 -47195363 - MSTC LTR MaLR -388 40 1 1813 172 27 22 chr6 142084191 142084533 -47195021 + L1 LINE L1 3979 4325 -1821 198 0 0 0 chr6 142084535 142084557 -47194997 + (T)n Simple_repeat Simple_repeat 1 22 0 966 145 0 30 chr6 142084667 142084833 -47194721 - AluSq SINE Alu -76 237 77 2330 112 0 3 chr6 142084955 142085268 -47194286 + AluSx SINE Alu 1 312 0 34 0 0 0 chr6 142085793 142085827 -47193727 + AT_rich Low_complexity Low_complexity 1 34 0 2109 130 0 0 chr6 142086897 142087196 -47192358 - AluSx SINE Alu -13 299 1 253 270 54 0 chr6 142087205 142087279 -47192275 - L2 LINE L2 -19 3294 3217 1371 155 158 0 chr6 142089165 142089430 -47190124 - MER7A DNA MER2_type 0 346 42 1479 159 44 105 chr6 142089500 142089889 -47189665 + MLT1A1 LTR MaLR 1 365 0 2331 80 0 7 chr6 142090982 142091282 -47188272 - AluY SINE Alu -9 302 5 246 32 0 0 chr6 142092064 142092095 -47187459 + (CA)n Simple_repeat Simple_repeat 2 32 0 223 247 117 26 chr6 142092460 142092537 -47187017 + MIR3 SINE MIR 119 202 -6 201 74 0 0 chr6 142092749 142092776 -47186778 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 227 319 43 21 chr6 142092783 142092877 -47186677 - MER5B DNA MER1_type -56 122 27 21 36 0 0 chr6 142095301 142095329 -47184225 + AT_rich Low_complexity Low_complexity 1 28 0 201 105 18 53 chr6 142095549 142095606 -47183948 + (TTTTC)n Simple_repeat Simple_repeat 2 56 0 2081 133 0 7 chr6 142100028 142100336 -47179218 + AluSx SINE Alu 1 306 -6 224 308 168 14 chr6 142105581 142105724 -47173830 + MIR SINE MIR 51 215 -47 217 227 9 118 chr6 142107455 142107565 -47171989 + MIR SINE MIR 165 262 0 307 300 22 0 chr6 142107565 142107655 -47171899 + CT-rich Low_complexity Low_complexity 1 92 0 225 290 0 0 chr6 142111138 142111200 -47168354 + (TAA)n Simple_repeat Simple_repeat 3 64 0 194 296 56 19 chr6 142111430 142111484 -47168070 + MIR SINE MIR 39 94 -114 2068 130 0 0 chr6 142111696 142111997 -47167557 + AluSx SINE Alu 1 301 -11 45 19 0 0 chr6 142112442 142112494 -47167060 + AT_rich Low_complexity Low_complexity 1 52 0 718 249 30 0 chr6 142113125 142113290 -47166264 - MIR3 SINE MIR -7 201 32 2232 107 0 3 chr6 142113482 142113780 -47165774 - AluSg SINE Alu -13 297 1 1558 174 16 47 chr6 142114197 142114519 -47165035 - AluJo SINE Alu 0 312 1 204 182 23 23 chr6 142114713 142114757 -47164797 - L2 LINE L2 -3 3310 3267 339 313 21 35 chr6 142114967 142115111 -47164443 - MER5B DNA MER1_type -8 170 29 2316 106 0 0 chr6 142116607 142116908 -47162646 - AluSq SINE Alu -12 301 1 29 70 0 0 chr6 142118049 142118106 -47161448 + AT_rich Low_complexity Low_complexity 1 57 0 2440 67 0 0 chr6 142118525 142118823 -47160731 + AluY SINE Alu 1 298 -13 1771 133 69 72 chr6 142120726 142121102 -47158452 - THE1C LTR MaLR 0 375 1 213 363 82 52 chr6 142121556 142121691 -47157863 + L3 LINE CR1 1438 1576 -1 393 260 163 8 chr6 142121780 142121903 -47157651 - MER5B DNA MER1_type -36 142 1 292 267 56 0 chr6 142122109 142122199 -47157355 - MER20B DNA MER1_type -662 121 27 1824 112 54 4 chr6 142124945 142125222 -47154332 - AluSg SINE Alu -19 291 1 1517 157 11 8 chr6 142125238 142125500 -47154054 - AluJo SINE Alu -10 302 40 349 313 133 43 chr6 142127527 142127738 -47151816 - MIR SINE MIR -23 239 10 227 358 58 15 chr6 142127794 142127931 -47151623 + L3b LINE CR1 1382 1524 -59 233 257 209 9 chr6 142128437 142128542 -47151012 - MIR SINE MIR -73 189 64 241 308 68 60 chr6 142128954 142129071 -47150483 + L3b LINE CR1 1455 1572 -11 2317 110 0 0 chr6 142129397 142129706 -47149848 + AluSg SINE Alu 1 309 -1 1569 83 0 0 chr6 142129807 142130012 -47149542 - MER41A LTR ERV1 -195 359 155 33 0 0 0 chr6 142130399 142130432 -47149122 + AT_rich Low_complexity Low_complexity 1 33 0 792 236 94 5 chr6 142130855 142131046 -47148508 - MIR SINE MIR -46 216 9 306 176 44 44 chr6 142131163 142131231 -47148323 - MER116 DNA Mariner -4 76 9 199 390 110 7 chr6 142131258 142131404 -47148150 - L2 LINE L2 -8 3264 3104 192 270 135 71 chr6 142131431 142131557 -47147997 - MER5B DNA MER1_type 0 178 45 4066 71 32 0 chr6 142132392 142132929 -47146625 + MER41A LTR ERV1 1 554 0 494 245 148 42 chr6 142134150 142134366 -47145188 - Charlie8 DNA MER1_type -2135 282 44 202 336 103 19 chr6 142134620 142134727 -47144827 + L2 LINE L2 3155 3270 -2 333 296 62 56 chr6 142135587 142135766 -47143788 - MER5A DNA MER1_type -2 187 8 180 323 198 26 chr6 142135850 142136042 -47143512 - L2 LINE L2 -208 3064 2840 212 328 65 103 chr6 142136302 142136564 -47142990 - L2 LINE L2 -1 3271 3020 476 258 258 0 chr6 142137685 142137883 -47141671 - MIR SINE MIR -13 249 1 295 261 80 0 chr6 142138420 142138508 -47141046 + L2 LINE L2 2712 2806 -508 * 498 257 83 7 chr6 142138503 142138647 -47140907 + MER5B DNA MER1_type 13 167 -11 1051 294 57 48 chr6 142138709 142139185 -47140369 + L2 LINE L2 2828 3307 -6 372 220 0 0 chr6 142139435 142139494 -47140060 - MER2 DNA MER2_type -1 344 286 454 146 0 48 chr6 142139534 142139616 -47139938 - MER2 DNA MER2_type -135 210 132 14354 132 29 14 chr6 142139616 142141197 -47138357 + Tigger1 DNA MER2_type 1 1633 -785 2049 118 0 4 chr6 142141197 142141512 -47138042 + AluSc SINE Alu 1 314 0 14354 132 29 14 chr6 142141512 142142310 -47137244 + Tigger1 DNA MER2_type 1633 2417 -1 454 146 0 48 chr6 142142310 142142330 -47137224 - MER2 DNA MER2_type -213 132 113 1286 150 9 43 chr6 142142330 142142563 -47136991 + AluJo SINE Alu 82 306 -6 799 240 110 22 chr6 142142563 142142957 -47136597 + MLT1H LTR MaLR 95 549 0 2215 92 0 7 chr6 142143187 142143482 -47136072 - AluY SINE Alu -18 293 1 23 33 0 0 chr6 142144464 142144494 -47135060 + AT_rich Low_complexity Low_complexity 1 30 0 255 118 20 39 chr6 142144878 142144929 -47134625 + MADE1 DNA Mariner 31 80 0 2209 94 0 0 chr6 142145586 142145873 -47133681 + AluY SINE Alu 11 297 -14 389 243 59 37 chr6 142146442 142146578 -47132976 + Charlie8 DNA MER1_type 63 201 -2216 972 120 7 7 chr6 142146608 142146750 -47132804 + AluSq/x SINE Alu 1 142 -170 21 0 0 0 chr6 142147050 142147071 -47132483 + AT_rich Low_complexity Low_complexity 1 21 0 1314 196 11 11 chr6 142147174 142147444 -47132110 + L1MB8 LINE L1 5586 5855 -323 * 1405 241 7 34 chr6 142147435 142147871 -47131683 + L1MB8 LINE L1 5755 6178 0 3718 202 42 10 chr6 142148485 142149744 -47129810 + L1MB7 LINE L1 4870 6173 -11 756 289 69 53 chr6 142150322 142150831 -47128723 + LTR33 LTR ERVL 5 521 0 325 296 142 35 chr6 142150831 142151175 -47128379 + HAL1b LINE L1 339 719 -629 1217 97 6 0 chr6 142151182 142151358 -47128196 - L1PA13 LINE L1 -3 6160 5984 2275 96 0 7 chr6 142151480 142151772 -47127782 - AluSc SINE Alu -19 290 1 233 364 40 13 chr6 142153395 142153546 -47126008 - MIR SINE MIR -33 229 75 266 209 227 9 chr6 142153862 142153972 -47125582 + MIR SINE MIR 21 154 -108 193 299 44 124 chr6 142154593 142154730 -47124824 - L2 LINE L2 -15 3298 3173 313 359 0 0 chr6 142154809 142154901 -47124653 - L2 LINE L2 -35 3237 3146 3044 89 14 2 chr6 142155915 142156344 -47123210 + L1PA13 LINE L1 5730 6163 0 21 36 0 0 chr6 142156544 142156572 -47122982 + AT_rich Low_complexity Low_complexity 1 28 0 378 317 75 12 chr6 142156656 142156817 -47122737 - MIR3 SINE MIR -32 176 6 2284 75 10 0 chr6 142157245 142157539 -47122015 - AluY SINE Alu -14 297 1 2071 87 0 0 chr6 142158265 142158531 -47121023 + AluY SINE Alu 44 309 -2 516 161 0 124 chr6 142161464 142161601 -47117953 + MLT1C LTR MaLR 1 120 -270 501 107 27 0 chr6 142161601 142161676 -47117878 + BC200 scRNA scRNA 1 77 -123 1333 158 201 10 chr6 142161682 142161980 -47117574 + MLT1C LTR MaLR 113 467 0 371 333 108 39 chr6 142162839 142163172 -47116382 + L3 LINE CR1 1221 1576 -1 958 222 58 61 chr6 142163791 142164052 -47115502 - MIR SINE MIR -2 260 1 547 257 64 76 chr6 142164352 142164601 -47114953 + MIR SINE MIR 7 252 -10 306 297 155 50 chr6 142166239 142166478 -47113076 + L1M2 LINE L1 543 806 -6043 195 162 0 0 chr6 142166749 142166786 -47112768 + CT-rich Low_complexity Low_complexity 1 37 0 225 65 0 0 chr6 142167032 142167063 -47112491 + (CTG)n Simple_repeat Simple_repeat 3 33 0 22 0 0 0 chr6 142170439 142170461 -47109093 + AT_rich Low_complexity Low_complexity 1 22 0 257 323 46 15 chr6 142170870 142171000 -47108554 - L2 LINE L2 -2 3270 3137 231 239 80 34 chr6 142171995 142172083 -47107471 - MIR SINE MIR -81 181 90 190 317 78 30 chr6 142172768 142172935 -47106619 + L2 LINE L2 2863 3037 -235 226 227 0 0 chr6 142172942 142172986 -47106568 + MIR SINE MIR 86 129 -133 180 294 59 0 chr6 142173121 142173189 -47106365 - MIR SINE MIR 0 262 191 361 344 39 68 chr6 142174815 142175274 -47104280 - LTR33 LTR ERVL -8 513 68 2420 69 0 10 chr6 142175381 142175686 -47103868 - AluY SINE Alu -9 302 1 671 301 86 9 chr6 142175811 142176253 -47103301 - L1M4 LINE L1 -1572 4574 4099 2414 91 38 32 chr6 142176261 142176634 -47102920 - THE1C LTR MaLR 0 375 1 470 309 96 37 chr6 142176638 142177266 -47102288 + L1ME3A LINE L1 3956 4620 -1526 292 274 34 40 chr6 142177461 142177636 -47101918 + L1ME3A LINE L1 4887 5060 -1086 27 62 0 0 chr6 142177724 142177772 -47101782 + AT_rich Low_complexity Low_complexity 1 48 0 316 294 142 7 chr6 142177826 142178108 -47101446 + L1ME3A LINE L1 5258 5577 -585 387 265 83 0 chr6 142178249 142178381 -47101173 + L1ME3A LINE L1 5763 5905 -265 2424 77 0 0 chr6 142178424 142178735 -47100819 + AluY SINE Alu 1 311 0 613 285 113 76 chr6 142178866 142179326 -47100228 - MLT1K LTR MaLR -102 486 10 267 31 0 0 chr6 142180002 142180034 -47099520 + (TG)n Simple_repeat Simple_repeat 2 33 0 217 253 35 29 chr6 142180114 142180284 -47099270 + (TTATA)n Simple_repeat Simple_repeat 5 175 0 * 292 220 60 6 chr6 142180224 142180392 -47099162 + (TA)n Simple_repeat Simple_repeat 1 177 0 2464 121 29 74 chr6 142180887 142181254 -47098300 - MSTC LTR MaLR 0 428 83 2145 104 10 3 chr6 142181254 142181552 -47098002 + AluSq SINE Alu 1 300 -13 2464 121 29 74 chr6 142181552 142181632 -47097922 - MSTC LTR MaLR -345 83 1 250 299 144 29 chr6 142181905 142182344 -47097210 - L1MC/D LINE L1 -749 5419 5402 1252 92 0 33 chr6 142182344 142182528 -47097026 + L1PA8 LINE L1 5992 6169 -3 250 299 144 29 chr6 142182528 142182696 -47096858 - L1MC/D LINE L1 -766 5402 5255 718 256 12 18 chr6 142182872 142183040 -47096514 - MIR SINE MIR -89 173 7 542 326 136 20 chr6 142183063 142183621 -47095933 - L1MC/D LINE L1 -1301 4845 4223 22 0 0 0 chr6 142184276 142184298 -47095256 + AT_rich Low_complexity Low_complexity 1 22 0 899 291 91 51 chr6 142185708 142186597 -47092957 + L2 LINE L2 2386 3313 0 350 208 28 0 chr6 142187431 142187575 -47091979 + GA-rich Low_complexity Low_complexity 2 149 0 1940 142 0 49 chr6 142187746 142188071 -47091483 - AluSx SINE Alu -3 309 1 2242 108 16 0 chr6 142188811 142189174 -47090380 + AluSx SINE Alu 1 368 0 403 162 0 0 chr6 142189550 142189618 -47089936 - MIR SINE MIR -120 142 75 1026 149 0 0 chr6 142193976 142194196 -47085358 + (TA)n Simple_repeat Simple_repeat 1 220 0 1812 105 0 0 chr6 142194209 142194447 -47085107 + AluSx SINE Alu 1 238 -74 982 177 0 17 chr6 142194901 142195076 -47084478 - FRAM SINE Alu -2 174 3 2195 100 10 7 chr6 142195248 142195548 -47084006 - AluSc SINE Alu -8 301 1 195 162 0 0 chr6 142195629 142195666 -47083888 + CT-rich Low_complexity Low_complexity 2 38 0 28 0 0 0 chr6 142197804 142197832 -47081722 + AT_rich Low_complexity Low_complexity 1 28 0 525 222 0 0 chr6 142197861 142197969 -47081585 - FLAM_A SINE Alu -34 108 1 350 370 14 20 chr6 142198036 142198182 -47081372 + MIR3 SINE MIR 47 191 -17 596 259 41 30 chr6 142199353 142199623 -47079931 - L1MC/D LINE L1 -2890 3256 2984 661 213 12 0 chr6 142199637 142199797 -47079757 - L1MC/D LINE L1 -3207 2939 2778 1345 214 52 7 chr6 142199915 142200204 -47079350 + AluJo SINE Alu 11 312 0 1548 266 20 33 chr6 142200206 142200812 -47078742 + L1M4 LINE L1 3167 3764 -2382 2792 164 172 85 chr6 142200853 142201666 -47077888 + L1MC3 LINE L1 6414 7297 -488 1492 135 4 0 chr6 142201653 142201897 -47077657 + L1 LINE L1 3463 3707 -2439 * 1100 200 5 23 chr6 142202188 142202403 -47077151 - MER20 DNA MER1_type -4 215 5 22 56 0 0 chr6 142203571 142203607 -47075947 + AT_rich Low_complexity Low_complexity 1 36 0 322 299 13 0 chr6 142204142 142204219 -47075335 - L2 LINE L2 -5 3267 3190 458 279 32 58 chr6 142205822 142206012 -47073542 + MIR SINE MIR 53 237 -25 207 114 0 0 chr6 142206172 142206207 -47073347 + (TG)n Simple_repeat Simple_repeat 2 36 0 1290 280 21 16 chr6 142206540 142206926 -47072628 + L1MA7 LINE L1 1 388 -5893 2863 273 32 34 chr6 142207183 142208307 -47071247 + L1MA7 LINE L1 818 1891 -4460 4113 133 1 49 chr6 142208320 142209019 -47070535 + THE1C-int LTR MaLR 688 1353 -227 1770 128 7 4 chr6 142209131 142209412 -47070142 + THE1C-int LTR MaLR 1295 1576 -4 2532 109 8 11 chr6 142209416 142209792 -47069762 + THE1C LTR MaLR 1 375 0 1520 212 23 5 chr6 142209798 142210185 -47069369 + L1MA7 LINE L1 2330 2723 -3627 5231 201 41 18 chr6 142210210 142210986 -47068568 + L1MA7 LINE L1 4019 4776 -1719 1969 119 21 7 chr6 142210986 142211272 -47068282 + AluSg SINE Alu 1 290 -20 5231 201 41 18 chr6 142211272 142212894 -47066660 + L1MA7 LINE L1 4776 6490 -5 2136 132 48 25 chr6 142212959 142213315 -47066239 + THE1B LTR MaLR 1 364 0 3112 93 2 0 chr6 142213315 142213743 -47065811 + THE1B-int LTR MaLR 1 429 -1151 3522 51 0 2 chr6 142213772 142214220 -47065334 - L1PA6 LINE L1 0 6154 5708 472 206 29 37 chr6 142214251 142214387 -47065167 - L1MA9 LINE L1 -137 6175 6041 * 2095 143 5 90 chr6 142214363 142214784 -47064770 + L1MA9 LINE L1 5683 6067 -245 524 241 108 6 chr6 142215079 142215237 -47064317 + MER46C DNA MER2_type 123 296 -42 893 296 110 33 chr6 142215249 142215719 -47063835 - MLT1H LTR MaLR 0 549 1 1360 151 42 26 chr6 142216841 142216952 -47062602 + AluJb SINE Alu 12 120 -192 198 0 0 0 chr6 142216952 142216974 -47062580 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 1360 151 42 26 chr6 142216974 142217127 -47062427 + AluJb SINE Alu 120 280 -32 929 251 135 19 chr6 142217362 142217912 -47061642 + L1MCc LINE L1 1103 1702 -4887 1128 204 117 38 chr6 142217945 142218305 -47061249 + MER57A LTR ERV1 39 403 0 1220 242 27 83 chr6 142218332 142218522 -47061032 + L1MCc LINE L1 1996 2195 -4927 2268 84 0 34 chr6 142218522 142218844 -47060710 + AluY SINE Alu 1 311 0 1220 242 27 83 chr6 142218844 142219207 -47060347 + L1MCc LINE L1 2195 2518 -4604 28 61 0 0 chr6 142219779 142219828 -47059726 + AT_rich Low_complexity Low_complexity 1 49 0 2241 68 0 3 chr6 142219922 142220217 -47059337 - AluY SINE Alu -17 294 1 246 229 18 92 chr6 142220283 142220392 -47059162 + L2 LINE L2 963 1063 -2251 440 239 0 123 chr6 142220417 142220660 -47058894 - L2 LINE L2 -1448 1866 1654 29 0 0 0 chr6 142220685 142220714 -47058840 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr6 142220792 142220820 -47058734 + AT_rich Low_complexity Low_complexity 1 28 0 207 186 0 0 chr6 142220839 142220882 -47058672 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 1567 286 87 22 chr6 142220885 142221717 -47057837 - HAL1 LINE L1 -166 2341 1456 372 298 84 40 chr6 142221744 142222197 -47057357 - HAL1b LINE L1 -840 508 36 24 0 0 0 chr6 142222435 142222459 -47057095 + AT_rich Low_complexity Low_complexity 1 24 0 1503 88 0 14 chr6 142222459 142222676 -47056878 - L1PA7 LINE L1 -3 6151 5938 370 361 30 18 chr6 142224386 142224552 -47055002 + MIR SINE MIR 1 168 -94 608 322 147 22 chr6 142224757 142225207 -47054347 - MLT1J LTR MaLR -2 509 4 1120 309 50 11 chr6 142226642 142227085 -47052469 - MLT1J LTR MaLR -46 465 6 276 269 115 0 chr6 142228189 142228267 -47051287 - L2 LINE L2 -7 3306 3220 567 182 74 16 chr6 142228665 142228786 -47050768 - MIR SINE MIR -80 182 55 214 120 0 80 chr6 142228933 142228983 -47050571 + (GAAAA)n Simple_repeat Simple_repeat 3 48 0 848 189 99 121 chr6 142232043 142232455 -47047099 - MER57A LTR ERV1 0 403 1 1741 327 38 34 chr6 142232455 142233341 -47046213 - MER31-int LTR ERV1 -393 7144 6255 1270 257 31 83 chr6 142233830 142234413 -47045141 - MER31-int LTR ERV1 -1330 6207 2453 2391 206 24 71 chr6 142234569 142234957 -47044597 - MER31-int LTR ERV1 -1716 5821 5475 1885 101 4 33 chr6 142234957 142235233 -47044321 + AluSg SINE Alu 30 297 -13 2391 206 24 71 chr6 142235233 142235508 -47044046 - MER31-int LTR ERV1 -2062 5475 5189 2336 214 69 80 chr6 142235502 142236558 -47042996 - MER31-int LTR ERV1 -1897 3039 1995 * 1913 160 71 4 chr6 142236694 142237060 -47042494 - MER61C LTR ERV1 -47 387 13 1042 285 133 37 chr6 142237073 142237620 -47041934 - HAL1 LINE L1 -1801 706 107 403 333 14 0 chr6 142238149 142238290 -47041264 + MIR SINE MIR 119 261 -1 306 319 0 11 chr6 142238306 142238397 -47041157 + MIR SINE MIR 13 102 -160 468 281 81 93 chr6 142238464 142238849 -47040705 - MLT1H LTR MaLR -158 391 12 27 0 0 0 chr6 142242630 142242657 -47036897 + AT_rich Low_complexity Low_complexity 1 27 0 2092 117 7 0 chr6 142242842 142243149 -47036405 + AluSx SINE Alu 1 309 0 278 333 38 15 chr6 142243151 142243283 -47036271 + MIR SINE MIR 57 191 -71 1781 157 124 11 chr6 142243318 142243674 -47035880 - MER61B LTR ERV1 -29 396 1 272 122 0 0 chr6 142243682 142243723 -47035831 - MER61B-int LTR ERV1 -22 5195 5155 42064 35 23 1 chr6 142243726 142249724 -47029830 + L1PA2 LINE L1 13 6147 -8 252 0 0 0 chr6 142249724 142249752 -47029802 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 12880 117 32 13 chr6 142249759 142252507 -47027047 - MER61B-int LTR ERV1 -48 5169 2304 704 42 0 21 chr6 142252513 142252608 -47026946 - MER61B LTR ERV1 -332 93 1 368 315 52 44 chr6 142253361 142253612 -47025942 + L1 LINE L1 5028 5280 -866 324 258 0 0 chr6 142253630 142253696 -47025858 + AluJ/FLAM SINE Alu 1 66 -236 7783 224 35 17 chr6 142253696 142254555 -47024999 - L1 LINE L1 -2147 5418 4575 2309 75 14 0 chr6 142254555 142254850 -47024704 - AluY SINE Alu -12 299 1 7783 224 35 17 chr6 142254850 142256502 -47023052 - L1 LINE L1 -2990 4575 2853 333 0 0 0 chr6 142256502 142256539 -47023015 + (TG)n Simple_repeat Simple_repeat 2 38 0 7783 224 35 17 chr6 142256539 142256553 -47023001 - L1 LINE L1 -4712 2853 2841 766 318 33 47 chr6 142256746 142257231 -47022323 - L1 LINE L1 -4738 1827 1350 466 134 50 76 chr6 142257206 142257325 -47022229 - L1 LINE L1 -6908 581 466 * 775 236 34 0 chr6 142257611 142257789 -47021765 + MER58A DNA MER1_type 1 184 -40 1224 265 68 39 chr6 142258504 142258942 -47020612 + MER74B LTR ERVL 102 552 -70 211 366 73 8 chr6 142259378 142259501 -47020053 - L2 LINE L2 -8 3305 3175 636 184 246 17 chr6 142259771 142259950 -47019604 - MER58A DNA MER1_type 0 224 5 458 320 78 0 chr6 142261600 142261753 -47017801 - L2 LINE L2 -701 2613 2449 1295 272 98 34 chr6 142262147 142262728 -47016826 + L1MC4 LINE L1 6468 7085 -957 220 163 58 0 chr6 142262773 142262859 -47016695 + (CATATA)n Simple_repeat Simple_repeat 6 96 0 506 353 118 17 chr6 142263054 142263594 -47015960 + L2 LINE L2 2709 3313 0 224 217 14 29 chr6 142263986 142264055 -47015499 + CT-rich Low_complexity Low_complexity 3 70 0 1479 224 30 16 chr6 142264090 142264393 -47015161 + Tigger5 DNA MER2_type 1 307 -2016 1325 110 60 0 chr6 142264398 142264598 -47014956 + Tigger5 DNA MER2_type 2112 2323 0 26 0 0 0 chr6 142264612 142264638 -47014916 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr6 142264705 142264735 -47014819 + AT_rich Low_complexity Low_complexity 1 30 0 427 224 118 20 chr6 142264773 142264925 -47014629 - LTR16A LTR ERVL -32 418 252 2082 273 48 50 chr6 142265325 142266893 -47012661 + L1MCc LINE L1 832 2619 -4503 309 225 78 21 chr6 142267093 142267235 -47012319 + L1MCc LINE L1 2946 3095 -4027 5744 28 0 3 chr6 142267367 142268059 -47011495 - L1HS LINE L1 -913 5233 4544 * 7795 15 0 0 chr6 142268047 142268975 -47010579 + L1HS LINE L1 5222 6149 -6 22 56 0 0 chr6 142268975 142269011 -47010543 + AT_rich Low_complexity Low_complexity 1 36 0 2361 135 25 39 chr6 142269843 142270281 -47009273 - Tigger2a DNA MER2_type -2 432 1 1769 240 73 17 chr6 142270421 142270888 -47008666 + MLT1D LTR MaLR 13 505 0 2233 164 32 8 chr6 142271627 142272006 -47007548 + MER61D LTR ERV1 114 501 0 180 111 0 0 chr6 142274342 142274369 -47005185 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 2863 264 138 22 chr6 142275921 142277568 -47001986 - L1M4 LINE L1 -678 5998 4156 3444 264 109 26 chr6 142277588 142278874 -47000680 - L1M4 LINE L1 -4036 2610 1432 541 230 15 52 chr6 142278874 142279009 -47000545 - FLAM_A SINE Alu 0 133 4 3444 264 109 26 chr6 142279009 142279106 -47000448 - L1M4 LINE L1 -5214 1432 1344 225 0 0 0 chr6 142279106 142279131 -47000423 + (TG)n Simple_repeat Simple_repeat 1 25 0 3444 264 109 26 chr6 142279131 142280120 -46999434 - L1M4 LINE L1 -5302 1344 16 224 336 126 0 chr6 142280151 142280270 -46999284 - MIR SINE MIR -123 139 6 309 289 132 18 chr6 142280299 142280413 -46999141 - MIR SINE MIR -16 246 120 28 79 0 0 chr6 142280476 142280539 -46999015 + AT_rich Low_complexity Low_complexity 1 63 0 564 276 110 32 chr6 142280900 142281146 -46998408 + HAL1 LINE L1 126 390 -2117 831 348 47 18 chr6 142281167 142281676 -46997878 + HAL1 LINE L1 448 971 -1536 1129 60 0 0 chr6 142281679 142281813 -46997741 + AluSg1 SINE Alu 1 134 -175 470 18 0 0 chr6 142281813 142281870 -46997684 + AluY SINE Alu 240 296 -14 306 280 44 51 chr6 142281873 142282169 -46997385 + HAL1 LINE L1 972 1265 -1242 1743 140 13 16 chr6 142284737 142285044 -46994510 + L1PA13 LINE L1 5855 6160 -3 2017 72 0 0 chr6 142286010 142286275 -46993279 - L1PA7 LINE L1 0 6154 5890 485 291 99 28 chr6 142286336 142286549 -46993005 + MIR SINE MIR 35 262 0 198 313 76 21 chr6 142287256 142287400 -46992154 + L2 LINE L2 2217 2368 -946 21 0 0 0 chr6 142287698 142287719 -46991835 + AT_rich Low_complexity Low_complexity 1 21 0 578 211 66 27 chr6 142287871 142288095 -46991459 + L1ME2 LINE L1 5799 6026 -140 286 253 117 7 chr6 142288215 142288369 -46991185 + L1MA10 LINE L1 6164 6334 0 637 245 85 123 chr6 142290068 142290443 -46989111 - L1MC4a LINE L1 -1642 6166 5821 207 0 0 0 chr6 142290443 142290466 -46989088 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 637 245 85 123 chr6 142290466 142290689 -46988865 - L1MC4a LINE L1 -1987 5821 5591 737 299 40 30 chr6 142290693 142290997 -46988557 + L1MD1 LINE L1 34 340 -6200 1566 261 36 39 chr6 142291171 142291638 -46987916 + L1MD1 LINE L1 772 1237 -5306 786 238 10 0 chr6 142291631 142291824 -46987730 + L1MD1 LINE L1 3030 3224 -3316 * 328 308 83 0 chr6 142291827 142291960 -46987594 + L1MD1 LINE L1 4687 4830 -1710 6277 207 38 31 chr6 142291972 142292778 -46986776 + L1MA4 LINE L1 1251 2049 -5516 180 0 0 0 chr6 142292778 142292798 -46986756 + (TA)n Simple_repeat Simple_repeat 2 21 0 6277 207 38 31 chr6 142292798 142293208 -46986346 + L1MA4 LINE L1 2049 2454 -5111 3567 83 42 42 chr6 142293208 142293786 -46985768 - LTR19B LTR ERV1 -2 578 1 6277 207 38 31 chr6 142293786 142294814 -46984740 + L1MA4 LINE L1 2454 3519 -4046 14476 201 26 3 chr6 142294934 142298651 -46980903 + L1MA4 LINE L1 3403 7210 -509 1347 193 131 52 chr6 142298651 142298946 -46980608 - MSTA LTR MaLR 0 428 93 2570 98 8 19 chr6 142298946 142299325 -46980229 + THE1C LTR MaLR 1 375 0 1347 193 131 52 chr6 142299325 142299417 -46980137 - MSTA LTR MaLR -335 93 10 2376 188 10 4 chr6 142299421 142299927 -46979627 + L1MA4 LINE L1 7201 7709 -10 3061 243 83 18 chr6 142299962 142301695 -46977859 + L1MD1 LINE L1 4793 6635 -1 361 250 273 0 chr6 142301689 142301861 -46977693 - L1MC/D LINE L1 -2190 5618 5400 * 6217 89 8 18 chr6 142302440 142303407 -46976147 + L1PA12 LINE L1 4678 5632 -536 2474 109 9 0 chr6 142303407 142303756 -46975798 + THE1A LTR MaLR 2 353 -2 6217 89 8 18 chr6 142303756 142304278 -46975276 + L1PA12 LINE L1 5632 6158 -10 1254 239 31 14 chr6 142304317 142304610 -46974944 + MER77 LTR ERV1 77 374 -231 276 247 24 12 chr6 142304615 142304700 -46974854 - L1MC/D LINE L1 -2406 5402 5317 31 0 0 0 chr6 142307227 142307258 -46972296 + AT_rich Low_complexity Low_complexity 1 31 0 2350 81 0 0 chr6 142307449 142307744 -46971810 - AluSg SINE Alu -15 295 1 22 0 0 0 chr6 142307750 142307772 -46971782 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr6 142308689 142308715 -46970839 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2421 77 0 0 chr6 142308810 142309122 -46970432 - AluSx SINE Alu 0 312 1 2319 94 3 0 chr6 142309909 142310216 -46969338 - AluSg SINE Alu -2 308 1 306 0 0 0 chr6 142310855 142310889 -46968665 + (A)n Simple_repeat Simple_repeat 1 34 0 287 103 0 0 chr6 142311002 142311041 -46968513 + L1P3 LINE L1 5818 5856 -298 3759 82 25 2 chr6 142311239 142311761 -46967793 + L1PA6 LINE L1 5619 6152 -2 354 339 67 9 chr6 142311905 142312129 -46967425 + MLT1J LTR MaLR 258 494 -17 380 306 62 35 chr6 142312738 142313110 -46966444 + L1M4 LINE L1 4465 4846 -1300 923 313 81 25 chr6 142313351 142313833 -46965721 + MLT1J LTR MaLR 1 509 -2 261 0 0 0 chr6 142313886 142313915 -46965639 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 276 30 0 0 chr6 142313914 142313947 -46965607 + (GA)n Simple_repeat Simple_repeat 2 34 0 309 362 130 6 chr6 142314030 142314207 -46965347 - MIR SINE MIR -19 243 45 38224 41 4 1 chr6 142318092 142323610 -46955944 - L1PA4 LINE L1 -4 6151 623 685 104 0 0 chr6 142323610 142323706 -46955848 - L1PA4 LINE L1 -6050 96 1 22 35 0 0 chr6 142323757 142323786 -46955768 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 142323986 142324010 -46955544 + AT_rich Low_complexity Low_complexity 1 24 0 200 151 0 113 chr6 142324977 142325030 -46954524 - MIR SINE MIR 0 262 216 1932 185 115 7 chr6 142325073 142325489 -46954065 - LOR1b LTR ERV1 0 461 1 743 273 122 65 chr6 142325693 142326290 -46953264 + MER20B DNA MER1_type 84 714 -69 11599 196 53 19 chr6 142326314 142330065 -46949489 - L1PA15 LINE L1 -22 6794 2920 1079 176 11 0 chr6 142330081 142330268 -46949286 - L1PA15 LINE L1 -6598 189 1 1196 98 0 0 chr6 142330320 142330483 -46949071 + L1PA7 LINE L1 5988 6150 -4 26 0 0 0 chr6 142331087 142331113 -46948441 + AT_rich Low_complexity Low_complexity 1 26 0 1074 252 4 4 chr6 142331920 142332158 -46947396 - MER8 DNA MER2_type 0 239 2 415 338 69 8 chr6 142332168 142332529 -46947025 + MER20B DNA MER1_type 317 699 -84 3725 262 39 23 chr6 142333330 142334940 -46944614 + L1M3b LINE L1 2266 3675 -3890 1018 199 0 20 chr6 142334949 142335145 -46944409 - MLT1C LTR MaLR -275 192 1 699 199 62 0 chr6 142335148 142335294 -46944260 - L1ME LINE L1 -606 5820 5666 1320 279 36 15 chr6 142335385 142335861 -46943693 - L1ME LINE L1 -2069 4337 3852 802 264 112 54 chr6 142335871 142336389 -46943165 - L1ME LINE L1 -5074 1335 788 830 220 94 0 chr6 142336591 142336814 -46942740 - LTR54B LTR ERV1 -79 419 176 2451 217 69 102 chr6 142336923 142337428 -46942126 - MER31-int LTR ERV1 -469 6129 5609 2015 134 0 0 chr6 142337428 142337749 -46941805 + AluSx SINE Alu 1 321 0 2451 217 69 102 chr6 142337749 142337996 -46941558 - MER31-int LTR ERV1 -989 5609 5355 5931 102 18 4 chr6 142337996 142339789 -46939765 - L1PA14 LINE L1 0 6161 4340 2451 217 69 102 chr6 142339789 142340727 -46938827 - MER31-int LTR ERV1 -1243 5355 3109 302 340 127 28 chr6 142341731 142341943 -46937611 - MIR SINE MIR -11 251 19 800 301 35 77 chr6 142342064 142342599 -46936955 + MER34 LTR ERV1 1 513 -29 199 349 71 24 chr6 142342687 142342813 -46936741 - L2 LINE L2 0 3272 3141 249 98 0 0 chr6 142343642 142343683 -46935871 + (CA)n Simple_repeat Simple_repeat 1 41 0 507 330 87 3 chr6 142343766 142344075 -46935479 - L1MC/D LINE L1 -2053 5755 5421 21 0 0 0 chr6 142344101 142344122 -46935432 + AT_rich Low_complexity Low_complexity 1 21 0 35 24 0 0 chr6 142344221 142344263 -46935291 + AT_rich Low_complexity Low_complexity 1 42 0 3147 184 63 31 chr6 142344358 142345058 -46934496 - Tigger6a DNA MER2_type -361 722 1 2176 146 26 16 chr6 142345113 142345497 -46934057 - MLT1B LTR MaLR -1 389 2 1874 239 30 11 chr6 142345506 142345985 -46933569 - MLT1B-int LTR MaLR -6 1729 1143 2842 214 52 31 chr6 142346179 142346769 -46932785 - MLT1B-int LTR MaLR -487 884 171 2072 136 3 0 chr6 142346769 142347064 -46932490 - AluSx SINE Alu -16 296 1 2842 214 52 31 chr6 142347064 142347235 -46932319 - MLT1B-int LTR MaLR -1200 171 5 1327 179 61 108 chr6 142347239 142347648 -46931906 - MLT1B LTR MaLR 0 390 1 1508 314 115 15 chr6 142347684 142348543 -46931011 + L2 LINE L2 2214 3173 -140 1030 238 39 93 chr6 142350256 142350748 -46928806 + L1M4 LINE L1 4808 5272 -874 22 35 0 0 chr6 142351492 142351521 -46928033 + AT_rich Low_complexity Low_complexity 1 29 0 2304 259 27 59 chr6 142351690 142352665 -46926889 - L1ME3 LINE L1 -27 6118 5172 334 315 65 35 chr6 142352667 142352867 -46926687 - L1ME3 LINE L1 -4481 1648 1443 414 298 33 60 chr6 142352988 142353287 -46926267 - L1ME3 LINE L1 -4862 1257 967 1894 117 133 15 chr6 142353311 142353635 -46925919 - THE1B LTR MaLR 0 364 3 2312 77 0 0 chr6 142353706 142354017 -46925537 - AluYa5 SINE Alu 0 311 1 1662 242 11 6 chr6 142354481 142354836 -46924718 - MLT1A1 LTR MaLR -8 357 1 2298 346 43 40 chr6 142354847 142356461 -46923093 + HERVL LTR ERVL 2937 4556 -1098 682 238 49 49 chr6 142356526 142356749 -46922805 + LTR16A1 LTR ERVL 235 457 0 26 50 0 0 chr6 142356856 142356896 -46922658 + AT_rich Low_complexity Low_complexity 1 40 0 747 297 20 20 chr6 142356896 142357142 -46922412 - MIR SINE MIR 0 262 17 1262 309 49 24 chr6 142357151 142357566 -46921988 - L2 LINE L2 -5 3308 2905 2822 83 8 3 chr6 142357566 142357939 -46921615 - THE1C LTR MaLR 0 375 1 1262 309 49 24 chr6 142357939 142358307 -46921247 - L2 LINE L2 -408 2905 2493 341 292 178 25 chr6 142360913 142361115 -46918439 - MIR SINE MIR -1 261 29 537 135 0 0 chr6 142361596 142361685 -46917869 + (TCCC)n Simple_repeat Simple_repeat 2 90 0 288 244 26 13 chr6 142361692 142361770 -46917784 + CT-rich Low_complexity Low_complexity 2 80 0 357 296 17 85 chr6 142361770 142361946 -46917608 + MIR SINE MIR 53 216 -46 248 351 0 0 chr6 142362340 142362414 -46917140 + MIR SINE MIR 19 92 -170 240 334 113 13 chr6 142362513 142362678 -46916876 + MIR SINE MIR 23 197 -65 191 234 62 141 chr6 142362916 142363044 -46916510 - L3 LINE CR1 -4 1573 1456 831 282 85 43 chr6 142364070 142364788 -46914766 - L2 LINE L2 -1 3312 2470 826 243 125 36 chr6 142364896 142365200 -46914354 - MER58B DNA MER1_type -10 331 1 188 274 41 41 chr6 142365262 142365335 -46914219 - MIR SINE MIR -83 179 107 457 315 42 6 chr6 142366498 142366663 -46912891 - MIR3 SINE MIR -4 204 34 1058 295 14 10 chr6 142367068 142367356 -46912198 + LTR16A LTR ERVL 120 408 -42 332 305 91 52 chr6 142367821 142368031 -46911523 - MIR SINE MIR -24 238 21 400 329 79 16 chr6 142369777 142370029 -46909525 - L3b LINE CR1 -138 1445 1178 23 78 0 0 chr6 142370769 142370820 -46908734 + AT_rich Low_complexity Low_complexity 1 51 0 299 276 228 44 chr6 142371562 142371834 -46907720 + MLT1H LTR MaLR 1 322 -227 564 341 93 68 chr6 142373124 142373901 -46905653 + L2 LINE L2 224 1019 -2295 426 314 194 8 chr6 142373955 142374207 -46905347 + L2 LINE L2 1936 2234 -1080 332 336 42 28 chr6 142374526 142374669 -46904885 + L2 LINE L2 3165 3309 -4 306 67 0 0 chr6 142376101 142376146 -46903408 + (TG)n Simple_repeat Simple_repeat 2 46 0 341 250 48 143 chr6 142379262 142379598 -46899956 - L2 LINE L2 -2 3311 3008 431 0 0 78 chr6 142379811 142379875 -46899679 + (TC)n Simple_repeat Simple_repeat 2 60 0 648 247 67 5 chr6 142380444 142380638 -46898916 - Charlie7 DNA MER1_type -355 2257 2052 1649 185 10 13 chr6 142380659 142381086 -46898468 + AluJo SINE Alu 1 426 0 531 212 24 6 chr6 142381053 142381218 -46898336 + GA-rich Low_complexity Low_complexity 2 169 0 2159 261 107 75 chr6 142381241 142382364 -46897190 - Charlie7 DNA MER1_type -598 2014 832 2166 97 0 32 chr6 142382364 142382675 -46896879 - AluSg SINE Alu -9 301 1 2159 261 107 75 chr6 142382675 142382998 -46896556 - Charlie7 DNA MER1_type -1780 832 521 1657 248 116 60 chr6 142383060 142383996 -46895558 - L1ME3A LINE L1 -9 6161 5176 456 264 96 0 chr6 142384000 142384167 -46895387 - Charlie7 DNA MER1_type -2178 434 252 464 215 83 0 chr6 142384317 142384438 -46895116 + L1MC5 LINE L1 7252 7382 -579 1169 214 132 38 chr6 142384700 142385177 -46894377 + L1MC5 LINE L1 7391 7912 -49 2282 91 3 7 chr6 142385258 142385567 -46893987 + AluSc SINE Alu 1 308 -1 233 179 0 0 chr6 142385572 142385628 -46893926 + L1MC4 LINE L1 6648 6703 -1339 * 243 154 0 0 chr6 142385611 142385629 -46893925 + L1MC4 LINE L1 6649 6700 -1342 180 176 0 0 chr6 142385629 142385663 -46893891 + (TATATG)n Simple_repeat Simple_repeat 5 38 0 285 75 0 0 chr6 142385980 142386020 -46893534 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 0 0 0 chr6 142386902 142386928 -46892626 + AT_rich Low_complexity Low_complexity 1 26 0 186 43 0 0 chr6 142387521 142387544 -46892010 + (A)n Simple_repeat Simple_repeat 1 23 0 434 242 99 69 chr6 142389573 142389877 -46889677 - MLT1C LTR MaLR 0 467 59 2042 109 23 0 chr6 142390035 142390339 -46889215 + AluY SINE Alu 1 311 0 30 0 0 0 chr6 142391959 142391989 -46887565 + AT_rich Low_complexity Low_complexity 1 30 0 315 179 0 0 chr6 142392642 142392698 -46886856 + L1MB3 LINE L1 5561 5616 -684 2072 125 3 13 chr6 142392698 142393010 -46886544 + AluSx SINE Alu 1 309 -3 3100 150 5 22 chr6 142393041 142393633 -46885921 + L1MB3 LINE L1 5601 6182 -1 3155 182 25 17 chr6 142395032 142395503 -46884051 + L1MA10 LINE L1 5677 6156 -178 240 35 0 0 chr6 142395503 142395532 -46884022 + (CA)n Simple_repeat Simple_repeat 2 30 0 3155 182 25 17 chr6 142395532 142395713 -46883841 + L1MA10 LINE L1 6156 6334 0 235 278 9 46 chr6 142395836 142395944 -46883610 + L1P4 LINE L1 5550 5653 -513 306 193 45 45 chr6 142396841 142396929 -46882625 - MLT1J LTR MaLR -31 480 393 460 205 90 16 chr6 142396931 142397053 -46882501 - MLT1J LTR MaLR -380 131 1 285 289 0 26 chr6 142397060 142397136 -46882418 + L2 LINE L2 3232 3305 -8 24 100 0 0 chr6 142397325 142397405 -46882149 + AT_rich Low_complexity Low_complexity 1 80 0 383 57 74 46 chr6 142397405 142397580 -46881974 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 * 430 171 28 0 chr6 142397571 142397861 -46881693 + (TA)n Simple_repeat Simple_repeat 1 298 0 228 144 61 8 chr6 142397978 142398110 -46881444 + (TA)n Simple_repeat Simple_repeat 2 140 0 1364 220 68 54 chr6 142398865 142399293 -46880261 - MSTB2 LTR MaLR -9 448 15 249 295 38 76 chr6 142399365 142399470 -46880084 + MIR SINE MIR 29 129 -79 338 333 65 43 chr6 142399552 142399738 -46879816 + MIR3 SINE MIR 16 205 -3 6842 207 51 33 chr6 142401385 142403931 -46875623 + L1M1 LINE L1 2710 5501 -2064 1450 181 172 10 chr6 142403932 142404340 -46875214 + L1M1 LINE L1 5657 6130 -1435 1314 198 19 71 chr6 142404393 142404771 -46874783 + L1MA10 LINE L1 5963 6320 -14 317 365 0 0 chr6 142405073 142405188 -46874366 - MLT1L LTR MaLR -133 482 368 1853 137 23 3 chr6 142406433 142406732 -46872822 + AluSx SINE Alu 8 312 0 673 208 124 6 chr6 142407704 142407882 -46871672 + MER3 DNA MER1_type 5 203 -6 257 266 0 106 chr6 142408130 142408157 -46871397 - MLT1I LTR MaLR -253 156 128 2448 50 0 3 chr6 142408157 142408458 -46871096 - AluY SINE Alu -11 300 1 257 266 0 106 chr6 142408458 142408524 -46871030 - MLT1I LTR MaLR -281 128 73 244 262 14 0 chr6 142408615 142408756 -46870798 + (TA)n Simple_repeat Simple_repeat 1 143 0 185 62 83 0 chr6 142409088 142409136 -46870418 + (TA)n Simple_repeat Simple_repeat 2 53 0 199 280 20 0 chr6 142409152 142409202 -46870352 + L2 LINE L2 3258 3308 -5 988 275 47 59 chr6 142409992 142410399 -46869155 + L2 LINE L2 2215 2616 -698 689 154 0 8 chr6 142410426 142410556 -46868998 + CT-rich Low_complexity Low_complexity 4 132 0 321 345 0 18 chr6 142410559 142410669 -46868885 + L2 LINE L2 2636 2743 -571 2090 231 12 14 chr6 142410674 142411181 -46868373 - L1 LINE L1 -1112 5034 4529 1318 214 34 10 chr6 142411186 142411481 -46868073 + AluJo SINE Alu 7 308 -4 1309 175 192 2 chr6 142411488 142411975 -46867579 + L1P4 LINE L1 5004 5591 -574 310 276 47 0 chr6 142412150 142412277 -46867277 + LTR43 LTR ERV1 180 312 -290 2798 175 39 12 chr6 142412489 142413083 -46866471 + L1MB1 LINE L1 5553 6162 -6 287 329 213 9 chr6 142413109 142413336 -46866218 + L2 LINE L2 2738 3010 -303 641 195 99 78 chr6 142414354 142414636 -46864918 + MER33 DNA MER1_type 32 319 -5 343 216 148 0 chr6 142414814 142414902 -46864652 - MIR SINE MIR -9 253 153 2055 138 33 3 chr6 142416253 142416586 -46862968 + MER7A DNA MER2_type 1 341 -5 6519 151 45 13 chr6 142417165 142417761 -46861793 - Tigger3b DNA MER2_type -1798 1230 654 2186 121 3 3 chr6 142417761 142418068 -46861486 - AluSx SINE Alu -5 307 1 6519 151 45 13 chr6 142418068 142418663 -46860891 - Tigger3b DNA MER2_type -2374 654 2 28 0 0 0 chr6 142419286 142419314 -46860240 + AT_rich Low_complexity Low_complexity 1 28 0 186 71 0 0 chr6 142420019 142420047 -46859507 + (T)n Simple_repeat Simple_repeat 1 28 0 218 236 90 22 chr6 142420116 142420205 -46859349 - MIR SINE MIR -101 161 67 6818 64 9 2 chr6 142420320 142421598 -46857956 - L1PA6 LINE L1 -14 6140 4852 5395 64 13 0 chr6 142421600 142422316 -46857238 + L1PA6 LINE L1 4142 4866 -1280 352 269 126 59 chr6 142422658 142422929 -46856625 - L1MC4a LINE L1 -1911 5897 5609 416 214 25 24 chr6 142424559 142424686 -46854868 - MLT1G LTR MaLR -4 620 496 316 281 156 47 chr6 142424678 142424870 -46854684 - MLT1G LTR MaLR -185 370 158 * 2390 61 0 0 chr6 142424885 142425181 -46854373 - AluY SINE Alu -15 296 1 612 242 89 32 chr6 142426284 142426637 -46852917 - L1ME1 LINE L1 -121 6114 5259 523 227 42 42 chr6 142426643 142426881 -46852673 - L1ME1 LINE L1 -3187 3028 2791 1598 238 68 51 chr6 142426881 142427414 -46852140 + MLT1F LTR MaLR 1 542 0 1098 265 76 18 chr6 142427447 142428069 -46851485 - L1ME1 LINE L1 -3605 2610 1999 557 224 40 13 chr6 142429045 142429197 -46850357 - L1M4 LINE L1 -3857 2289 2134 186 316 10 14 chr6 142430398 142430488 -46849066 + MIR SINE MIR 79 171 -37 12365 138 29 104 chr6 142430616 142433435 -46846119 - L1P LINE L1 -3538 2608 1 7357 31 0 7 chr6 142433437 142435113 -46844441 + L1PA4 LINE L1 4514 6183 0 5844 52 4 0 chr6 142435215 142435950 -46843604 + L1PA7 LINE L1 5417 6154 0 326 236 36 71 chr6 142436302 142436442 -46843112 + MLT1K LTR MaLR 448 582 -6 930 101 22 17 chr6 142436505 142436683 -46842871 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 834 88 41 12 chr6 142436698 142436869 -46842685 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 788 11 0 0 chr6 142436941 142437034 -46842520 + L1PA4 LINE L1 6060 6152 -3 22 56 0 0 chr6 142437576 142437612 -46841942 + AT_rich Low_complexity Low_complexity 1 36 0 615 326 34 0 chr6 142438063 142438241 -46841313 - MIR SINE MIR -2 260 77 1158 253 100 54 chr6 142438241 142438739 -46840815 + L1M4 LINE L1 15 535 -6007 246 105 0 0 chr6 142438831 142438869 -46840685 + (CA)n Simple_repeat Simple_repeat 1 38 0 241 313 50 20 chr6 142439319 142439356 -46840198 - LTR40a LTR ERVL -30 489 455 1062 14 43 0 chr6 142439356 142439497 -46840057 + (TAGA)n Simple_repeat Simple_repeat 3 149 0 241 313 50 20 chr6 142439497 142439558 -46839996 - LTR40a LTR ERVL -64 455 388 9557 106 6 1 chr6 142440415 142441822 -46837732 + L1P LINE L1 2955 4369 -1777 7334 188 52 34 chr6 142442148 142443761 -46835793 - MER52A LTR ERV1 -2 1753 1 305 211 66 26 chr6 142443954 142444030 -46835524 + MIR SINE MIR 122 200 -62 369 327 150 0 chr6 142445328 142445481 -46834073 - MIR3 SINE MIR 0 208 33 1028 335 60 3 chr6 142445698 142446068 -46833486 + L2 LINE L2 2508 2898 -416 251 225 382 0 chr6 142446073 142446162 -46833392 - FLAM_A SINE Alu -8 125 3 527 327 90 35 chr6 142446162 142446563 -46832991 + L2 LINE L2 2889 3311 -2 2399 66 0 0 chr6 142446911 142447198 -46832356 - AluY SINE Alu -24 287 1 302 115 311 0 chr6 142447319 142447380 -46832174 - MADE1 DNA Mariner 0 80 1 230 303 57 25 chr6 142447503 142447625 -46831929 + L1P LINE L1 4887 5012 -1134 230 290 0 47 chr6 142448259 142448366 -46831188 + (CATA)n Simple_repeat Simple_repeat 4 105 0 697 34 0 0 chr6 142449924 142450012 -46829542 - L1PA2 LINE L1 0 6155 6068 237 254 221 8 chr6 142450121 142450243 -46829311 + MIR SINE MIR 110 257 -5 2695 29 0 6 chr6 142450279 142450590 -46828964 + AluY SINE Alu 1 309 -2 389 407 102 0 chr6 142450732 142451064 -46828490 - L2 LINE L2 -552 2762 2397 703 31 20 10 chr6 142451082 142451180 -46828374 + (TTTC)n Simple_repeat Simple_repeat 4 102 0 445 258 50 44 chr6 142451632 142451791 -46827763 + MIR SINE MIR 84 243 -19 196 319 94 38 chr6 142451884 142452044 -46827510 + L2 LINE L2 2148 2316 -998 2722 84 127 0 chr6 142452090 142452484 -46827070 + MLT2A1 LTR ERVL 1 444 0 14952 58 13 19 chr6 142452484 142454424 -46825130 + HERVL-A1 LTR ERVL 1 1929 -3725 190 318 157 32 chr6 142454507 142454724 -46824830 + L2 LINE L2 2404 2647 -667 233 207 162 36 chr6 142454767 142454791 -46824763 - L1MA9 LINE L1 -8 6304 6281 428 269 29 47 chr6 142454791 142454962 -46824592 - L1ME1 LINE L1 -44 6122 5955 832 305 43 14 chr6 142455658 142455940 -46823614 - L2 LINE L2 -1139 2175 1886 411 242 23 47 chr6 142455958 142456086 -46823468 + MIR SINE MIR 117 241 -21 23 0 0 0 chr6 142457848 142457871 -46821683 + AT_rich Low_complexity Low_complexity 1 23 0 2102 111 10 0 chr6 142458643 142458931 -46820623 + AluSg1 SINE Alu 1 291 -18 183 204 0 20 chr6 142460402 142460451 -46819103 - L3b LINE CR1 -381 1202 1155 687 299 91 30 chr6 142461186 142461722 -46817832 - L3 LINE CR1 -53 1524 899 1205 229 35 60 chr6 142461893 142462259 -46817295 + MLT1A1 LTR MaLR 1 357 -8 209 56 0 28 chr6 142462611 142462647 -46816907 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2105 212 32 26 chr6 142462734 142463235 -46816319 - MLT1D LTR MaLR 0 505 2 1655 184 30 13 chr6 142466437 142466736 -46812818 + AluJb SINE Alu 1 304 -8 1703 278 205 21 chr6 142467599 142468815 -46810739 + L2 LINE L2 1894 3313 0 1765 217 82 19 chr6 142469185 142469660 -46809894 + L1MCa LINE L1 104 608 -5818 3793 194 118 28 chr6 142469719 142470402 -46809152 + L1MCb LINE L1 499 1119 -5445 2230 104 0 10 chr6 142470402 142470710 -46808844 + AluSc SINE Alu 3 307 -2 3793 194 118 28 chr6 142470710 142471517 -46808037 + L1MCb LINE L1 1119 2136 -4428 1094 187 71 0 chr6 142471539 142471807 -46807747 + L1MCb LINE L1 2200 2486 -4078 183 42 0 0 chr6 142472712 142472736 -46806818 + (TG)n Simple_repeat Simple_repeat 1 24 0 * 198 0 0 0 chr6 142472735 142472757 -46806797 + (GA)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr6 142473572 142473594 -46805960 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr6 142473867 142473900 -46805654 + AT_rich Low_complexity Low_complexity 1 33 0 2038 184 3 11 chr6 142474198 142474572 -46804982 + MLT2C1 LTR ERVL 1 371 -26 27 29 0 0 chr6 142475206 142475240 -46804314 + AT_rich Low_complexity Low_complexity 1 34 0 408 333 121 32 chr6 142475463 142475959 -46803595 + HAL1 LINE L1 155 694 -1813 978 52 0 0 chr6 142476234 142476350 -46803204 - AluY SINE Alu -186 125 10 1127 58 0 0 chr6 142476350 142476519 -46803035 + AluY SINE Alu 145 313 0 1489 278 189 29 chr6 142476528 142477709 -46801845 + HAL1 LINE L1 973 2342 -165 26 0 0 0 chr6 142477857 142477883 -46801671 + AT_rich Low_complexity Low_complexity 1 26 0 1525 80 5 10 chr6 142480235 142480434 -46799120 + AluSc SINE Alu 1 198 -111 338 107 0 0 chr6 142480434 142480490 -46799064 + AluSc SINE Alu 244 299 0 290 376 38 23 chr6 142481757 142481890 -46797664 + MIR3 SINE MIR 33 167 -41 1812 167 0 7 chr6 142481986 142482280 -46797274 + AluJb SINE Alu 21 312 0 587 144 81 0 chr6 142482302 142482413 -46797141 + L1MB3 LINE L1 6062 6181 -2 297 245 117 0 chr6 142482432 142482526 -46797028 + MER103 DNA DNA 61 165 -1 22 0 0 0 chr6 142482838 142482860 -46796694 + AT_rich Low_complexity Low_complexity 1 22 0 2400 105 0 0 chr6 142484340 142484646 -46794908 - AluSx SINE Alu -6 306 1 1806 145 0 44 chr6 142485851 142486175 -46793379 + AluSx SINE Alu 1 311 0 600 299 32 48 chr6 142486875 142487126 -46792428 + MIR SINE MIR 14 260 -2 374 280 35 42 chr6 142488939 142489082 -46790472 - MIR SINE MIR 0 262 121 231 146 0 0 chr6 142489167 142489208 -46790346 + (TA)n Simple_repeat Simple_repeat 2 42 0 29 28 0 0 chr6 142489212 142489248 -46790306 + AT_rich Low_complexity Low_complexity 1 36 0 306 265 49 5 chr6 142489448 142489626 -46789928 - L1MC/D LINE L1 -456 5665 5592 803 218 13 0 chr6 142491078 142491234 -46788320 - FRAM SINE Alu -23 153 1 240 162 95 27 chr6 142491509 142491583 -46787971 + L1MB8 LINE L1 6096 6174 -4 271 316 21 0 chr6 142491646 142491741 -46787813 + L1ME4a LINE L1 5518 5614 -507 406 261 141 5 chr6 142491764 142491948 -46787606 + L1ME4a LINE L1 5658 5866 -255 339 256 76 6 chr6 142491980 142492152 -46787402 + L1ME4a LINE L1 5935 6118 -3 3522 154 13 15 chr6 142492187 142492792 -46786762 + L1MC1 LINE L1 5667 6270 -63 230 170 151 19 chr6 142494122 142494175 -46785379 + LTR40a LTR ERVL 1 60 -459 313 273 210 17 chr6 142494292 142494468 -46785086 + LTR40a LTR ERVL 179 388 -131 759 142 94 84 chr6 142494900 142495154 -46784400 + MER33 DNA MER1_type 1 246 -78 815 248 106 15 chr6 142495174 142495656 -46783898 + MLT1F LTR MaLR 1 565 -2 347 169 15 0 chr6 142495656 142495721 -46783833 + MER33 DNA MER1_type 258 323 -1 340 282 135 32 chr6 142495729 142495885 -46783669 + MIR SINE MIR 60 231 -31 3606 241 41 41 chr6 142496898 142497948 -46781606 + L1M4 LINE L1 90 1139 -5403 8149 193 12 25 chr6 142497951 142499452 -46780102 + L1PB2 LINE L1 3240 4759 -1392 353 22 22 0 chr6 142499452 142499498 -46780056 + (TTA)n Simple_repeat Simple_repeat 3 49 0 7356 31 0 0 chr6 142499498 142501005 -46778549 - L1PA4 LINE L1 -18 6137 4637 8149 193 12 25 chr6 142501005 142502438 -46777116 + L1PB2 LINE L1 4757 6132 -19 180 0 0 0 chr6 142502446 142502466 -46777088 + (TAA)n Simple_repeat Simple_repeat 2 21 0 603 228 0 19 chr6 142502469 142502627 -46776927 + L1M4 LINE L1 1128 1282 -5260 932 229 39 25 chr6 142502641 142502925 -46776629 + L1M4 LINE L1 1423 1710 -4832 2186 161 24 20 chr6 142502947 142503425 -46776129 + L1MC/D LINE L1 5186 5666 -667 378 68 0 85 chr6 142503427 142503486 -46776068 - Tigger5 DNA MER2_type -118 2205 2152 * 586 194 23 47 chr6 142503457 142503586 -46775968 - Tigger5 DNA MER2_type -2197 126 1 2260 204 42 7 chr6 142503586 142504155 -46775399 + L1M4 LINE L1 2763 3351 -3293 191 375 90 49 chr6 142504624 142504869 -46774685 - L2 LINE L2 -19 3294 3040 820 214 11 17 chr6 142504877 142505055 -46774499 + MER5B DNA MER1_type 2 178 0 728 266 111 9 chr6 142505261 142505487 -46774067 - MIR SINE MIR 0 262 14 355 350 55 78 chr6 142505609 142505725 -46773829 - L2 LINE L2 0 3272 3155 1176 202 4 26 chr6 142505725 142505953 -46773601 + MER58A DNA MER1_type 1 223 -1 355 350 55 78 chr6 142505953 142506236 -46773318 - L2 LINE L2 -117 3155 2882 263 238 25 38 chr6 142507891 142507971 -46771583 - LTR33 LTR ERVL -8 513 435 383 246 172 8 chr6 142507987 142508121 -46771433 - LTR33 LTR ERVL -311 210 55 462 335 99 82 chr6 142508612 142509065 -46770489 - L2 LINE L2 -1 3271 2811 354 195 327 9 chr6 142509231 142509344 -46770210 + MER5A DNA MER1_type 36 184 -5 207 0 0 0 chr6 142512237 142512260 -46767294 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chr6 142512416 142512447 -46767107 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr6 142512798 142512833 -46766721 + AT_rich Low_complexity Low_complexity 1 35 0 2303 100 3 3 chr6 142513066 142513376 -46766178 + AluSx SINE Alu 3 312 0 498 210 249 5 chr6 142513393 142513598 -46765956 + MER5C DNA MER1_type 69 323 -1 2000 120 45 0 chr6 142513991 142514282 -46765272 - AluSx SINE Alu -8 304 1 553 346 34 26 chr6 142514864 142515133 -46764421 - L3 LINE CR1 -72 1505 1235 180 139 0 28 chr6 142515127 142515163 -46764391 + L3 LINE CR1 1379 1413 -164 * 218 343 133 9 chr6 142515167 142515272 -46764282 + MER91C DNA MER1_type 1 118 -22 2739 184 14 92 chr6 142516340 142516991 -46762563 - MER77 LTR ERV1 0 605 6 242 349 30 15 chr6 142517029 142517161 -46762393 + LTR37B LTR ERV1 7 140 -328 341 229 64 11 chr6 142517329 142517480 -46762074 + LTR37B LTR ERV1 242 443 -23 24 67 0 0 chr6 142518088 142518133 -46761421 + AT_rich Low_complexity Low_complexity 1 45 0 281 26 26 0 chr6 142518512 142518550 -46761004 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 623 290 106 35 chr6 142518848 142519217 -46760337 - MLT1J LTR MaLR -18 493 99 189 0 0 0 chr6 142519486 142519507 -46760047 + (CA)n Simple_repeat Simple_repeat 2 22 0 558 261 47 47 chr6 142519582 142519793 -46759761 + MIR SINE MIR 52 262 0 182 352 62 57 chr6 142520426 142520619 -46758935 - L2 LINE L2 -4 3309 3116 2038 199 64 0 chr6 142520732 142521123 -46758431 - MER47B DNA MER2_type -2 416 1 2448 259 83 24 chr6 142521191 142521422 -46758132 + L1MDa LINE L1 18 234 -6306 237 65 0 0 chr6 142521422 142521453 -46758101 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2448 259 83 24 chr6 142521453 142522012 -46757542 + L1MDa LINE L1 234 1005 -5535 * 6722 236 60 57 chr6 142521993 142523853 -46755701 + L1MDa LINE L1 2462 4326 -2214 1990 131 35 0 chr6 142523853 142524143 -46755411 + AluSx SINE Alu 2 301 -11 6722 236 60 57 chr6 142524143 142525154 -46754400 + L1MDa LINE L1 4326 5332 -1208 1532 138 15 15 chr6 142525183 142525443 -46754111 - Tigger2 DNA MER2_type -16 2702 2443 3953 155 36 14 chr6 142525486 142526214 -46753340 - Tigger2 DNA MER2_type -1974 744 1 822 169 26 19 chr6 142526279 142526433 -46753121 + L1MD1 LINE L1 6005 6159 -83 1274 179 120 43 chr6 142526433 142526734 -46752820 + MER1B DNA MER1_type 1 324 -15 595 103 0 31 chr6 142526737 142526834 -46752720 + L1MD1 LINE L1 6144 6237 -5 996 201 25 0 chr6 142527087 142527286 -46752268 + MER3 DNA MER1_type 6 209 0 245 329 79 36 chr6 142528058 142528198 -46751356 + MER5B DNA MER1_type 27 172 -6 4263 145 34 14 chr6 142528455 142529469 -46750085 - Tigger1 DNA MER2_type -1 2417 1 22 0 0 0 chr6 142532129 142532151 -46747403 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 142532917 142532938 -46746616 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 142533428 142533457 -46746097 + AT_rich Low_complexity Low_complexity 1 29 0 1266 128 32 14 chr6 142533674 142533892 -46745662 + MER47A DNA MER2_type 22 243 -123 30 45 0 0 chr6 142534944 142534988 -46744566 + AT_rich Low_complexity Low_complexity 1 44 0 384 257 28 28 chr6 142534992 142535126 -46744428 + (TA)n Simple_repeat Simple_repeat 2 138 -42 2020 150 40 6 chr6 142535126 142535480 -46744074 + MER47A DNA MER2_type 1 366 0 384 257 28 28 chr6 142535480 142535524 -46744030 + (TA)n Simple_repeat Simple_repeat 137 180 0 192 364 0 59 chr6 142535868 142535986 -46743568 + L2 LINE L2 2230 2340 -974 1230 195 43 123 chr6 142536255 142536670 -46742884 - MLT1B LTR MaLR -8 382 1 211 349 18 37 chr6 142536875 142536984 -46742570 + L2 LINE L2 2985 3091 -181 219 289 0 0 chr6 142537110 142537162 -46742392 + GA-rich Low_complexity Low_complexity 2 53 0 315 359 61 0 chr6 142537540 142537758 -46741796 + L2 LINE L2 2785 3014 -299 1120 201 91 64 chr6 142537866 142537926 -46741628 + L1MB8 LINE L1 4986 5043 -1131 2266 219 93 40 chr6 142537926 142538497 -46741057 + MER77 LTR ERV1 3 603 -2 1120 201 91 64 chr6 142538497 142538983 -46740571 + L1MB8 LINE L1 5043 5556 -618 1601 233 49 4 chr6 142538987 142539437 -46740117 + L1MB8 LINE L1 5709 6178 0 843 317 146 6 chr6 142539556 142540014 -46739540 - L2 LINE L2 -213 3059 2542 275 246 0 0 chr6 142540084 142540153 -46739401 + L1ME4a LINE L1 5969 6037 -84 470 330 90 15 chr6 142540533 142540866 -46738688 - MLT1I LTR MaLR 0 409 52 256 271 44 30 chr6 142541715 142541837 -46737717 - MIR SINE MIR -62 146 70 3023 78 45 7 chr6 142542787 142543213 -46736341 - MLT2A1 LTR ERVL 0 444 3 2284 105 0 0 chr6 142543609 142543905 -46735649 - AluSq SINE Alu -15 298 3 2291 105 0 0 chr6 142544927 142545251 -46734303 - AluSg SINE Alu 0 310 1 477 295 73 54 chr6 142545436 142545900 -46733654 - Charlie8 DNA MER1_type -1868 549 77 317 264 88 11 chr6 142546764 142546855 -46732699 - MIR3 SINE MIR -3 205 108 2492 235 76 54 chr6 142546924 142548608 -46730946 + L1MDa LINE L1 1963 3715 -2825 2686 161 47 21 chr6 142548608 142549141 -46730413 + L1PA16 LINE L1 5618 6164 -2 2492 235 76 54 chr6 142549141 142549453 -46730101 + L1MDa LINE L1 3715 4018 -2522 636 183 19 16 chr6 142549481 142549625 -46729929 + MLT1E1 LTR MaLR 438 654 0 285 270 44 57 chr6 142549656 142549815 -46729739 - ERVL LTR ERVL -333 5431 5275 1103 213 25 101 chr6 142549928 142550364 -46729190 - MLT1C LTR MaLR -6 461 59 22 0 0 0 chr6 142550964 142550986 -46728568 + AT_rich Low_complexity Low_complexity 1 22 0 8610 101 42 6 chr6 142551146 142552389 -46727165 - HSMAR1 DNA Mariner 0 1287 1 204 275 150 10 chr6 142552638 142552778 -46726776 - L2 LINE L2 -338 2934 2777 233 286 16 16 chr6 142552819 142552882 -46726672 + L2 LINE L2 3198 3260 -12 1541 199 109 25 chr6 142553590 142554021 -46725533 - MLT1C LTR MaLR 0 467 1 289 113 57 19 chr6 142554039 142554092 -46725462 + HAL1 LINE L1 1593 1647 -860 1006 277 136 13 chr6 142554376 142554769 -46724785 + LTR33 LTR ERVL 10 468 -53 189 0 0 0 chr6 142554769 142554790 -46724764 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1006 277 136 13 chr6 142554790 142554851 -46724703 + LTR33 LTR ERVL 468 520 -1 1219 364 31 14 chr6 142555504 142556330 -46723224 + HERVL LTR ERVL 2760 3599 -2055 429 269 29 69 chr6 142556395 142556494 -46723060 + MER58 DNA MER1_type 2 93 -2327 2269 123 0 3 chr6 142556494 142556803 -46722751 + AluSx SINE Alu 1 308 -4 429 269 29 69 chr6 142556803 142556878 -46722676 + MER58 DNA MER1_type 93 169 -2251 259 146 21 0 chr6 142556903 142556951 -46722603 + MER58 DNA MER1_type 2366 2414 -6 2168 105 3 3 chr6 142557333 142557629 -46721925 - AluSc SINE Alu -13 296 1 1886 147 0 4 chr6 142557644 142557945 -46721609 - AluJo SINE Alu 0 306 7 449 317 35 6 chr6 142559176 142559526 -46720028 - LTR16A LTR ERVL 0 450 61 875 363 44 34 chr6 142559761 142560753 -46718801 - ERVL LTR ERVL -453 5311 4310 1065 321 61 56 chr6 142560862 142561861 -46717693 - ERVL LTR ERVL -1701 3953 2950 2247 108 0 0 chr6 142562012 142562309 -46717245 - AluSc SINE Alu -12 297 1 1663 307 52 17 chr6 142562319 142562897 -46716657 - ERVL LTR ERVL -2122 2874 2318 425 202 0 0 chr6 142562897 142562996 -46716558 - L1MB8 LINE L1 -2 6176 6078 1663 307 52 17 chr6 142562996 142563511 -46716043 - ERVL LTR ERVL -2678 2318 1707 2198 314 44 32 chr6 142563541 142564684 -46714870 - ERVL LTR ERVL -3840 1156 1 848 339 29 21 chr6 142564692 142565075 -46714479 - LTR16A LTR ERVL -8 442 57 674 182 144 6 chr6 142565581 142565762 -46713792 + MIR SINE MIR 57 262 0 2129 118 48 28 chr6 142567321 142567676 -46711878 + THE1B LTR MaLR 1 362 -2 482 264 77 60 chr6 142567834 142568016 -46711538 + MIR SINE MIR 78 262 0 520 274 149 18 chr6 142568076 142568357 -46711197 - L2 LINE L2 0 3313 2996 2360 255 23 11 chr6 142568565 142569221 -46710333 - L1MCb LINE L1 -5067 978 315 1176 260 29 34 chr6 142569249 142569691 -46709863 - L1ME3A LINE L1 -4 6166 5727 1428 63 0 42 chr6 142569695 142569886 -46709668 + AluY SINE Alu 113 295 -16 506 244 96 64 chr6 142569890 142570140 -46709414 - L1ME3A LINE L1 -456 5714 5457 324 265 38 53 chr6 142570497 142570629 -46708925 - L1ME LINE L1 -5901 169 40 180 0 0 0 chr6 142571206 142571226 -46708328 + (A)n Simple_repeat Simple_repeat 1 20 0 426 245 13 126 chr6 142572298 142572457 -46707097 - MIR SINE MIR -85 177 37 258 160 0 0 chr6 142572880 142572930 -46706624 + (ATG)n Simple_repeat Simple_repeat 2 51 0 2038 129 7 0 chr6 142573578 142573886 -46705668 - AluSx SINE Alu 0 312 3 202 284 148 49 chr6 142573989 142574172 -46705382 + MIR SINE MIR 6 206 -56 32 26 0 0 chr6 142574441 142574480 -46705074 + AT_rich Low_complexity Low_complexity 1 39 0 1696 193 121 2 chr6 142576379 142576810 -46702744 - L1MC3 LINE L1 0 7785 7304 2211 202 9 16 chr6 142576814 142577327 -46702227 + LTR27 LTR ERV1 7 1218 -141 1258 185 11 15 chr6 142577498 142577763 -46701791 - L1MC3 LINE L1 -474 7311 7048 288 91 0 0 chr6 142577763 142577807 -46701747 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 39868 57 5 3 chr6 142577852 142583991 -46695563 - L1PA5 LINE L1 -7 6147 1 3335 172 62 32 chr6 142583991 142584748 -46694806 - L1MC3 LINE L1 -778 7007 6228 272 355 0 61 chr6 142584759 142584973 -46694581 - MLT1J LTR MaLR -175 336 136 992 342 71 24 chr6 142585099 142585895 -46693659 - L2 LINE L2 -1 3312 2476 430 167 8 75 chr6 142585980 142586100 -46693454 - MLT1G1 LTR MaLR -65 502 391 501 266 36 110 chr6 142586149 142586484 -46693070 - MLT1G1 LTR MaLR -285 310 1 295 281 50 114 chr6 142586487 142586847 -46692707 - MLT1G1-int LTR MaLR -3 1368 1032 505 304 40 27 chr6 142587400 142587696 -46691858 - MLT1G1-int LTR MaLR -769 602 303 317 276 99 7 chr6 142587866 142588018 -46691536 - MLT1G LTR MaLR -7 535 370 473 346 12 25 chr6 142588091 142588331 -46691223 - MLT1G LTR MaLR -314 276 40 2232 117 3 0 chr6 142588394 142588692 -46690862 + AluSx SINE Alu 1 299 -13 465 125 135 0 chr6 142588807 142588903 -46690651 - L1MB4 LINE L1 -8 6172 6064 200 301 0 41 chr6 142590502 142590575 -46688979 - MIR SINE MIR -92 170 101 1026 229 60 29 chr6 142590586 142590900 -46688654 - L1MB7 LINE L1 0 6184 5861 197 279 49 0 chr6 142590900 142590961 -46688593 - MIR SINE MIR -88 120 57 273 359 0 0 chr6 142591203 142591281 -46688273 + MIR SINE MIR 38 115 -93 262 156 16 62 chr6 142593270 142593334 -46686220 + MADE1 DNA Mariner 20 80 0 380 257 43 50 chr6 142593392 142593532 -46686022 - LTR67 LTR ERVL -12 545 407 222 174 0 0 chr6 142593907 142593953 -46685601 + (TA)n Simple_repeat Simple_repeat 1 46 0 33 43 0 0 chr6 142593977 142594024 -46685530 + AT_rich Low_complexity Low_complexity 1 47 0 21 57 0 0 chr6 142594052 142594087 -46685467 + AT_rich Low_complexity Low_complexity 1 35 0 2235 114 0 0 chr6 142594179 142594487 -46685067 - AluSx SINE Alu -4 308 1 378 74 0 0 chr6 142594572 142594626 -46684928 + (TC)n Simple_repeat Simple_repeat 1 54 0 1850 151 28 6 chr6 142595473 142595802 -46683752 + MER7A DNA MER2_type 11 345 -1 1960 133 52 6 chr6 142595909 142596254 -46683300 + MER46B DNA MER2_type 1 236 0 242 281 52 10 chr6 142597062 142597158 -46682396 + MLT1K LTR MaLR 147 246 -342 889 100 39 8 chr6 142597702 142597832 -46681722 - LTR8 LTR ERV1 -556 135 2 2813 189 18 100 chr6 142597833 142598495 -46681059 - MST-int LTR MaLR -123 1528 921 751 191 19 19 chr6 142598492 142598654 -46680900 + L1MC3 LINE L1 6462 6623 -1162 * 3701 175 25 78 chr6 142598652 142599570 -46679984 + L1MC3 LINE L1 6917 7785 0 2228 125 35 14 chr6 142600559 142600926 -46678628 - THE1C LTR MaLR 0 375 1 42 36 0 0 chr6 142601108 142601164 -46678390 + AT_rich Low_complexity Low_complexity 1 56 0 207 317 50 0 chr6 142601929 142601989 -46677565 + L2 LINE L2 3201 3263 -9 346 91 0 0 chr6 142602265 142602309 -46677245 + AluYb8 SINE Alu 101 144 -164 216 0 0 0 chr6 142602336 142602360 -46677194 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 504 375 53 26 chr6 142602481 142602972 -46676582 + MLT1K LTR MaLR 34 537 -51 408 292 72 24 chr6 142603808 142604099 -46675455 - L1MCc LINE L1 -3636 3305 3001 227 155 39 10 chr6 142604157 142604260 -46675294 + (TTTAA)n Simple_repeat Simple_repeat 1 106 0 1309 268 29 15 chr6 142604627 142605154 -46674400 - L1MCc LINE L1 -4613 2509 1976 285 125 0 0 chr6 142605200 142605256 -46674298 + (GA)n Simple_repeat Simple_repeat 2 57 0 338 293 30 9 chr6 142605278 142605530 -46674024 - L1MCc LINE L1 -4753 2109 1370 30 0 0 0 chr6 142606600 142606630 -46672924 + AT_rich Low_complexity Low_complexity 1 30 0 243 267 125 54 chr6 142606678 142606918 -46672636 - L1M4 LINE L1 -1217 4929 4673 278 370 70 20 chr6 142606945 142607145 -46672409 - L2 LINE L2 -711 2603 2394 1962 155 7 7 chr6 142607839 142608149 -46671405 - AluJo SINE Alu -2 310 1 185 384 55 61 chr6 142608344 142608508 -46671046 - MIR3 SINE MIR -7 201 39 239 0 32 0 chr6 142610257 142610288 -46669266 + (TA)n Simple_repeat Simple_repeat 1 32 0 487 312 46 53 chr6 142610453 142610930 -46668624 - L1M4 LINE L1 -1014 5132 4658 4429 143 62 16 chr6 142610930 142611750 -46667804 - L1MA4 LINE L1 -6 6294 5437 487 312 46 53 chr6 142611750 142611861 -46667693 - L1M4 LINE L1 -1488 4658 4548 2194 273 81 48 chr6 142611980 142613326 -46666228 - L1ME3A LINE L1 -71 6099 4673 412 306 29 17 chr6 142613326 142613499 -46666055 - MER5B DNA MER1_type -3 175 1 2194 273 81 48 chr6 142613499 142613835 -46665719 - L1ME3A LINE L1 -1497 4673 4349 423 310 44 20 chr6 142614192 142614489 -46665065 - L1ME3A LINE L1 -2371 3775 3472 348 314 139 10 chr6 142614858 142615161 -46664393 - L1M4 LINE L1 -1988 4158 3817 190 167 15 15 chr6 142615161 142615227 -46664327 + (TA)n Simple_repeat Simple_repeat 2 67 0 1027 305 150 23 chr6 142615264 142616312 -46663242 - L1M4 LINE L1 -2389 3757 2277 26 0 0 0 chr6 142617066 142617092 -46662462 + AT_rich Low_complexity Low_complexity 1 26 0 307 296 98 78 chr6 142617222 142617580 -46661974 + L1ME LINE L1 5354 5718 -403 769 294 107 15 chr6 142617636 142618110 -46661444 - L2 LINE L2 -40 3273 2749 1138 307 97 37 chr6 142618126 142618627 -46660927 - L2 LINE L2 -251 3062 2499 2124 130 0 16 chr6 142618627 142618943 -46660611 - AluSx SINE Alu -1 311 1 1138 307 97 37 chr6 142618943 142619213 -46660341 - L2 LINE L2 -814 2499 2247 35 71 0 0 chr6 142619341 142619411 -46660143 + AT_rich Low_complexity Low_complexity 1 70 0 2203 137 16 11 chr6 142619460 142619841 -46659713 - L1MA4 LINE L1 -6 6294 5912 286 243 144 0 chr6 142619925 142620036 -46659518 - Charlie7 DNA MER1_type -296 2316 2190 719 273 106 75 chr6 142620054 142620694 -46658860 - Charlie7 DNA MER1_type -1952 660 1 623 328 92 19 chr6 142620852 142621221 -46658333 + MLT1I LTR MaLR 14 409 0 300 246 0 0 chr6 142621601 142621670 -46657884 - L1ME4a LINE L1 -84 6037 5969 862 317 146 6 chr6 142621740 142622198 -46657356 + L2 LINE L2 2542 3059 -213 1765 233 49 4 chr6 142622317 142622767 -46656787 - L1MB8 LINE L1 0 6178 5709 1120 201 91 64 chr6 142622771 142623257 -46656297 - L1MB8 LINE L1 -618 5556 5043 2266 219 93 40 chr6 142623257 142623828 -46655726 - MER77 LTR ERV1 -2 603 3 1120 201 91 64 chr6 142623828 142623888 -46655666 - L1MB8 LINE L1 -1131 5043 4986 315 359 61 0 chr6 142623996 142624214 -46655340 - L2 LINE L2 -299 3014 2785 219 289 0 0 chr6 142624592 142624644 -46654910 + CT-rich Low_complexity Low_complexity 2 53 0 211 349 18 37 chr6 142624770 142624879 -46654675 - L2 LINE L2 -181 3091 2985 1230 195 43 123 chr6 142625084 142625499 -46654055 + MLT1B LTR MaLR 1 382 -8 192 364 0 59 chr6 142625768 142625886 -46653668 - L2 LINE L2 -974 2340 2230 384 257 28 28 chr6 142626230 142626274 -46653280 + (TA)n Simple_repeat Simple_repeat 1 44 -135 2020 150 40 6 chr6 142626274 142626628 -46652926 - MER47A DNA MER2_type 0 366 1 384 257 28 28 chr6 142626628 142626762 -46652792 + (TA)n Simple_repeat Simple_repeat 43 179 0 30 45 0 0 chr6 142626766 142626810 -46652744 + AT_rich Low_complexity Low_complexity 1 44 0 1266 128 32 14 chr6 142627862 142628080 -46651474 - MER47A DNA MER2_type -123 243 22 22 35 0 0 chr6 142628297 142628326 -46651228 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 142628816 142628837 -46650717 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 142629603 142629625 -46649929 + AT_rich Low_complexity Low_complexity 1 22 0 4263 145 34 14 chr6 142632285 142633299 -46646255 + Tigger1 DNA MER2_type 1 2417 -1 245 329 79 36 chr6 142633556 142633696 -46645858 - MER5B DNA MER1_type -6 172 27 996 201 25 0 chr6 142634468 142634667 -46644887 - MER3 DNA MER1_type 0 209 6 595 103 0 31 chr6 142634920 142635017 -46644537 - L1MD1 LINE L1 -5 6237 6144 1274 179 120 43 chr6 142635020 142635321 -46644233 - MER1B DNA MER1_type -15 324 1 822 169 26 19 chr6 142635321 142635475 -46644079 - L1MD1 LINE L1 -83 6159 6005 3953 155 36 14 chr6 142635540 142636268 -46643286 + Tigger2 DNA MER2_type 1 744 -1974 1532 138 15 15 chr6 142636311 142636571 -46642983 + Tigger2 DNA MER2_type 2443 2702 -16 6722 236 60 57 chr6 142636600 142637611 -46641943 - L1MDa LINE L1 -1208 5332 4326 1990 131 35 0 chr6 142637611 142637901 -46641653 - AluSx SINE Alu -11 301 2 6722 236 60 57 chr6 142637901 142639761 -46639793 - L1MDa LINE L1 -2214 4326 2462 2448 254 79 23 chr6 142639742 142640301 -46639253 - L1MDa LINE L1 -5535 1005 235 * 237 65 0 0 chr6 142640301 142640332 -46639222 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2448 254 79 23 chr6 142640332 142640563 -46638991 - L1MDa LINE L1 -6305 235 18 2038 199 64 0 chr6 142640631 142641022 -46638532 + MER47B DNA MER2_type 1 416 -2 182 352 62 57 chr6 142641135 142641328 -46638226 + L2 LINE L2 3116 3309 -4 558 261 47 47 chr6 142641961 142642172 -46637382 - MIR SINE MIR 0 262 52 189 0 0 0 chr6 142642247 142642268 -46637286 + (TG)n Simple_repeat Simple_repeat 2 22 0 623 290 106 35 chr6 142642537 142642906 -46636648 + MLT1J LTR MaLR 99 493 -18 281 26 26 0 chr6 142643204 142643242 -46636312 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 24 67 0 0 chr6 142643621 142643666 -46635888 + AT_rich Low_complexity Low_complexity 1 45 0 341 229 64 11 chr6 142644274 142644425 -46635129 - LTR37B LTR ERV1 -23 443 242 242 349 30 15 chr6 142644593 142644725 -46634829 - LTR37B LTR ERV1 -328 140 7 2739 184 14 92 chr6 142644763 142645414 -46634140 + MER77 LTR ERV1 6 605 0 218 343 133 9 chr6 142646482 142646587 -46632967 + MER91C DNA MER1_type 23 140 0 180 139 0 28 chr6 142646591 142646627 -46632927 - L3 LINE CR1 -164 1413 1379 * 553 346 34 26 chr6 142646621 142646890 -46632664 + L3 LINE CR1 1235 1505 -72 2000 120 45 0 chr6 142647472 142647763 -46631791 + AluSx SINE Alu 1 304 -8 498 210 249 5 chr6 142648156 142648361 -46631193 - MER5C DNA MER1_type -1 323 69 2303 100 3 3 chr6 142648378 142648688 -46630866 - AluSx SINE Alu 0 312 3 21 57 0 0 chr6 142648921 142648956 -46630598 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr6 142649307 142649338 -46630216 + AT_rich Low_complexity Low_complexity 1 31 0 207 0 0 0 chr6 142649494 142649517 -46630037 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 354 195 327 9 chr6 142652410 142652523 -46627031 - MER5A DNA MER1_type -5 184 36 462 335 99 82 chr6 142652689 142653142 -46626412 + L2 LINE L2 2811 3271 -1 383 246 172 8 chr6 142653633 142653767 -46625787 + LTR33 LTR ERVL 55 210 -311 263 238 25 38 chr6 142653783 142653863 -46625691 + LTR33 LTR ERVL 435 513 -8 355 350 55 78 chr6 142655518 142655801 -46623753 + L2 LINE L2 2882 3155 -117 1176 202 4 26 chr6 142655801 142656029 -46623525 - MER58A DNA MER1_type -1 223 1 355 350 55 78 chr6 142656029 142656145 -46623409 + L2 LINE L2 3155 3272 0 728 266 111 9 chr6 142656267 142656493 -46623061 + MIR SINE MIR 14 262 0 820 214 11 17 chr6 142656699 142656877 -46622677 - MER5B DNA MER1_type 0 178 2 191 375 90 49 chr6 142656885 142657130 -46622424 + L2 LINE L2 3040 3294 -19 2260 204 42 7 chr6 142657599 142658168 -46621386 - L1M4 LINE L1 -3293 3351 2763 586 194 23 47 chr6 142658168 142658297 -46621257 + Tigger5 DNA MER2_type 1 126 -2197 378 68 0 85 chr6 142658268 142658327 -46621227 + Tigger5 DNA MER2_type 2152 2205 -118 * 2186 161 24 20 chr6 142658329 142658807 -46620747 - L1MC/D LINE L1 -667 5666 5186 932 229 39 25 chr6 142658829 142659113 -46620441 - L1M4 LINE L1 -4832 1710 1423 603 228 0 19 chr6 142659127 142659285 -46620269 - L1M4 LINE L1 -5260 1282 1128 180 0 0 0 chr6 142659288 142659308 -46620246 + (TTA)n Simple_repeat Simple_repeat 2 21 0 5619 158 13 6 chr6 142659316 142660749 -46618805 - L1PB2 LINE L1 -19 6132 4586 3337 32 2 0 chr6 142660749 142661155 -46618399 + L1P LINE L1 4637 5043 -1103 25 0 0 0 chr6 142712076 142712101 -46567453 + AT_rich Low_complexity Low_complexity 1 25 0 1903 162 3 0 chr6 142713001 142713304 -46566250 - AluSx SINE Alu -5 307 4 327 311 104 95 chr6 142716146 142716387 -46563167 + L2 LINE L2 3030 3272 0 206 349 66 53 chr6 142718162 142718314 -46561240 - MIR SINE MIR -57 205 52 21 36 0 0 chr6 142718389 142718417 -46561137 + AT_rich Low_complexity Low_complexity 1 28 0 36 23 0 0 chr6 142718659 142718702 -46560852 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr6 142719065 142719087 -46560467 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr6 142722038 142722073 -46557481 + AT_rich Low_complexity Low_complexity 1 35 0 225 0 0 0 chr6 142722688 142722713 -46556841 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 25 31 0 0 chr6 142722794 142722826 -46556728 + AT_rich Low_complexity Low_complexity 1 32 0 255 230 26 44 chr6 142723080 142723193 -46556361 + (CATATA)n Simple_repeat Simple_repeat 5 115 0 31 0 0 0 chr6 142723575 142723606 -46555948 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 142724862 142724883 -46554671 + AT_rich Low_complexity Low_complexity 1 21 0 239 208 0 104 chr6 142726622 142726699 -46552855 - MIR SINE MIR -108 154 86 210 158 0 0 chr6 142727567 142727605 -46551949 + (TA)n Simple_repeat Simple_repeat 2 39 0 1159 279 53 104 chr6 142729487 142730516 -46549038 + L2 LINE L2 1802 2778 -536 245 387 85 0 chr6 142730506 142730612 -46548942 + L2 LINE L2 3157 3271 -1 * 254 358 52 21 chr6 142730876 142731064 -46548490 + MIR SINE MIR 22 212 -50 219 395 137 12 chr6 142732019 142732275 -46547279 + L2 LINE L2 2623 2910 -404 326 296 144 0 chr6 142732349 142732481 -46547073 - L1ME LINE L1 -556 5589 5439 939 230 55 63 chr6 142732663 142733129 -46546425 - MER39 LTR ERV1 -40 667 1 246 260 80 0 chr6 142733129 142733229 -46546325 - L1ME LINE L1 -936 5193 5086 681 291 56 58 chr6 142733551 142734080 -46545474 - L1MEd LINE L1 -5051 1081 563 279 93 0 0 chr6 142734223 142734266 -46545288 + (TC)n Simple_repeat Simple_repeat 1 43 0 614 96 10 0 chr6 142734266 142734370 -46545184 + (TA)n Simple_repeat Simple_repeat 2 106 0 198 410 35 21 chr6 142734630 142734774 -46544780 + L2 LINE L2 3123 3268 -4 566 264 126 0 chr6 142735068 142735250 -46544304 + MIR SINE MIR 50 254 -8 247 379 45 8 chr6 142735677 142735809 -46543745 - MIR3 SINE MIR -52 156 20 507 309 91 26 chr6 142736151 142736416 -46543138 - L2 LINE L2 -1 3312 3031 186 351 27 0 chr6 142737293 142737367 -46542187 + MIR3 SINE MIR 120 195 -13 22 0 0 0 chr6 142737598 142737620 -46541934 + AT_rich Low_complexity Low_complexity 1 22 0 2422 53 0 13 chr6 142737891 142738193 -46541361 + AluY SINE Alu 1 298 -13 300 313 97 0 chr6 142738350 142738484 -46541070 + MIR SINE MIR 70 216 -46 1586 175 0 51 chr6 142740191 142740506 -46539048 - AluJb SINE Alu -13 299 1 2080 109 10 14 chr6 142741063 142741357 -46538197 + AluSx SINE Alu 1 293 -19 1604 232 78 19 chr6 142742073 142742548 -46537006 - MLT1D LTR MaLR 0 505 3 202 310 17 0 chr6 142742910 142742968 -46536586 + L3 LINE CR1 1240 1298 -279 512 284 62 6 chr6 142742983 142743145 -46536409 + MIR SINE MIR 76 246 -16 229 261 135 9 chr6 142744056 142744137 -46535417 - MIR SINE MIR -18 244 144 1896 141 21 0 chr6 142744137 142744428 -46535126 - AluSx SINE Alu -15 297 1 229 261 135 9 chr6 142744428 142744457 -46535097 - MIR SINE MIR -118 144 120 188 340 50 44 chr6 142744466 142744625 -46534929 + L2 LINE L2 2595 2754 -560 1981 137 80 53 chr6 142745555 142745921 -46533633 + MSTB LTR MaLR 1 382 -44 1609 142 87 0 chr6 142745921 142746226 -46533328 + AluSx SINE Alu 9 335 0 1981 137 80 53 chr6 142746226 142746273 -46533281 + MSTB LTR MaLR 382 426 0 1448 251 50 24 chr6 142746405 142746828 -46532726 - LTR16A1 LTR ERVL -9 448 15 1461 190 53 21 chr6 142750126 142750410 -46529144 + AluJo SINE Alu 1 293 -19 1947 122 22 0 chr6 142751626 142751926 -46527628 + AluSq SINE Alu 1 306 0 441 271 65 13 chr6 142752249 142752404 -46527150 + MER20B DNA MER1_type 1 163 -620 371 251 127 25 chr6 142752392 142752675 -46526879 + MER20B DNA MER1_type 472 783 0 * 1931 144 14 0 chr6 142753277 142753568 -46525986 - AluSq SINE Alu -18 295 1 25 65 0 0 chr6 142754421 142754467 -46525087 + AT_rich Low_complexity Low_complexity 1 46 0 572 308 100 9 chr6 142755455 142755786 -46523768 + L1MC/D LINE L1 5441 5801 -2007 28 0 0 0 chr6 142756821 142756849 -46522705 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr6 142757595 142757643 -46521911 + AT_rich Low_complexity Low_complexity 1 48 0 192 265 20 0 chr6 142758266 142758413 -46521141 + (TA)n Simple_repeat Simple_repeat 1 150 0 790 212 70 4 chr6 142758463 142758802 -46520752 - MLT1D-int LTR MaLR -894 477 2 2305 202 40 9 chr6 142758803 142759296 -46520258 - MLT1D LTR MaLR 0 593 1 546 358 40 15 chr6 142862698 142863097 -46416457 - L2 LINE L2 -355 2959 2551 265 328 103 25 chr6 142863474 142863678 -46415876 - L2 LINE L2 -354 2960 2741 21 36 0 0 chr6 142864462 142864490 -46415064 + AT_rich Low_complexity Low_complexity 1 28 0 236 261 62 15 chr6 142867012 142867077 -46412477 - L2 LINE L2 -22 3250 3183 243 0 0 0 chr6 142867484 142867511 -46412043 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2146 132 0 0 chr6 142869194 142869498 -46410056 + AluSg SINE Alu 1 304 -6 26 30 0 0 chr6 142869535 142869568 -46409986 + AT_rich Low_complexity Low_complexity 1 33 0 527 266 104 93 chr6 142870886 142871251 -46408303 + L2 LINE L2 2942 3310 -3 2162 153 9 0 chr6 142872206 142872540 -46407014 - MER1B DNA MER1_type 0 337 1 255 317 24 12 chr6 142873063 142873230 -46406324 + L1ME3A LINE L1 5152 5320 -826 498 322 45 19 chr6 142873477 142873741 -46405813 + L1ME3A LINE L1 5532 5802 -368 368 278 38 30 chr6 142873772 142873905 -46405649 + MER63 DNA MER1_type 1 760 -302 2376 78 0 0 chr6 142874182 142874496 -46405058 + AluY SINE Alu 1 314 0 23 33 0 0 chr6 142876112 142876142 -46403412 + AT_rich Low_complexity Low_complexity 1 30 0 381 255 32 0 chr6 142877435 142877529 -46402025 + MER5A DNA MER1_type 16 112 -77 352 328 123 32 chr6 142877590 142877932 -46401622 + MLT1L LTR MaLR 173 545 -70 22 56 0 0 chr6 142878115 142878151 -46401403 + AT_rich Low_complexity Low_complexity 1 36 0 1068 241 32 50 chr6 142879311 142879651 -46399903 + MLT2C1 LTR ERVL 13 346 -51 369 43 0 0 chr6 142879692 142879739 -46399815 + (TA)n Simple_repeat Simple_repeat 2 48 0 188 75 0 50 chr6 142880086 142880126 -46399428 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 1808 79 8 0 chr6 142880828 142881068 -46398486 + L1PA7 LINE L1 5913 6154 0 2260 76 0 45 chr6 142881306 142881620 -46397934 + AluY SINE Alu 3 302 -9 246 309 110 43 chr6 142881628 142882000 -46397554 + HAL1b LINE L1 212 608 -740 1890 224 88 78 chr6 142882331 142883265 -46396289 + L1MC5 LINE L1 6563 7521 -440 320 258 101 81 chr6 142883339 142883537 -46396017 + L1ME3A LINE L1 5960 6161 -9 525 325 125 28 chr6 142885302 142885726 -46393828 - L3 LINE CR1 -1 1576 1112 2256 210 41 12 chr6 142887294 142887803 -46391751 - L1ME2 LINE L1 -24 6140 5617 1179 166 14 5 chr6 142887872 142888095 -46391459 + L1MA4 LINE L1 6067 6291 -9 45 98 0 0 chr6 142888102 142888245 -46391309 + AT_rich Low_complexity Low_complexity 1 143 0 2789 152 31 3 chr6 142888477 142889094 -46390460 + MER44D DNA MER2_type 7 704 -1 2416 81 0 0 chr6 142889279 142889586 -46389968 - AluSg SINE Alu -3 307 1 334 282 68 10 chr6 142890492 142890595 -46388959 - MIR3 SINE MIR -14 194 86 27 49 0 0 chr6 142890867 142890908 -46388646 + AT_rich Low_complexity Low_complexity 1 41 0 255 61 0 0 chr6 142891125 142891158 -46388396 + (A)n Simple_repeat Simple_repeat 1 33 0 25 31 0 0 chr6 142892637 142892669 -46386885 + AT_rich Low_complexity Low_complexity 1 32 0 724 208 62 6 chr6 142894216 142894394 -46385160 + MER5A DNA MER1_type 1 188 -1 1690 108 0 39 chr6 142894708 142894968 -46384586 - AluSg SINE Alu 0 310 61 232 294 88 0 chr6 142895882 142895950 -46383604 - L2 LINE L2 -5 3267 3194 1446 157 0 121 chr6 142896311 142896643 -46382911 + AluJo SINE Alu 1 292 -10 374 341 29 57 chr6 142896992 142897238 -46382316 - L2 LINE L2 -850 2464 2226 512 260 136 62 chr6 142897953 142898195 -46381359 - MIR SINE MIR -1 261 2 21 0 0 0 chr6 142898279 142898300 -46381254 + AT_rich Low_complexity Low_complexity 1 21 0 192 317 124 25 chr6 142899960 142900121 -46379433 + MIR SINE MIR 37 213 -49 367 254 219 40 chr6 142900199 142900257 -46379297 + MIR SINE MIR 2 48 -214 1997 139 3 7 chr6 142900257 142900558 -46378996 - AluSx SINE Alu -12 300 1 367 254 219 40 chr6 142900558 142900700 -46378854 + MIR SINE MIR 48 238 -24 25 31 0 0 chr6 142900878 142900910 -46378644 + AT_rich Low_complexity Low_complexity 1 32 0 190 349 151 0 chr6 142901110 142901196 -46378358 + L2 LINE L2 3156 3254 -18 221 224 20 0 chr6 142901206 142901255 -46378299 + (TA)n Simple_repeat Simple_repeat 1 50 0 253 376 123 38 chr6 142901438 142902238 -46377316 - L2 LINE L2 -1262 2052 1185 23 54 0 0 chr6 142902238 142902275 -46377279 + AT_rich Low_complexity Low_complexity 1 37 0 1956 161 17 17 chr6 142902813 142903168 -46376386 + THE1A LTR MaLR 1 355 0 219 146 91 36 chr6 142903302 142903357 -46376197 + L2 LINE L2 3173 3230 -83 182 277 0 0 chr6 142905703 142905750 -46373804 + MIR SINE MIR 154 200 -62 24 32 0 0 chr6 142907235 142907266 -46372288 + AT_rich Low_complexity Low_complexity 1 31 0 2214 94 0 3 chr6 142907930 142908228 -46371326 - AluSc SINE Alu -12 297 1 430 234 298 0 chr6 142908625 142908766 -46370788 + MER5A DNA MER1_type 6 188 -1 283 304 86 101 chr6 142908963 142909220 -46370334 - L2 LINE L2 0 3272 3020 181 247 173 49 chr6 142909224 142909305 -46370249 - L2 LINE L2 -2 3270 3180 2229 87 17 0 chr6 142909386 142909675 -46369879 - AluSc SINE Alu -15 294 1 2109 81 11 0 chr6 142909899 142910182 -46369372 + AluSp SINE Alu 12 297 -16 207 346 77 0 chr6 142910204 142910254 -46369300 - L2 LINE L2 -493 2821 2776 195 42 0 0 chr6 142910254 142910278 -46369276 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 207 346 77 0 chr6 142910278 142910357 -46369197 - L2 LINE L2 -538 2776 2682 363 307 214 25 chr6 142911513 142912022 -46367532 - L2 LINE L2 -68 3245 2624 263 274 16 0 chr6 142912392 142912454 -46367100 + (CATA)n Simple_repeat Simple_repeat 2 64 0 27 29 0 0 chr6 142913112 142913146 -46366408 + AT_rich Low_complexity Low_complexity 1 34 0 389 331 67 17 chr6 142913148 142913326 -46366228 - L2 LINE L2 -535 2779 2593 182 377 0 16 chr6 142913370 142913431 -46366123 + L2 LINE L2 3193 3252 -20 582 230 146 22 chr6 142914518 142914696 -46364858 + MER3 DNA MER1_type 6 205 -4 1549 225 53 10 chr6 142916285 142916703 -46362851 + MER63B DNA MER1_type 1 436 0 1071 161 30 0 chr6 142917424 142917592 -46361962 - FAM SINE Alu -2 173 1 2375 130 5 19 chr6 142917652 142918021 -46361533 + THE1B LTR MaLR 1 364 0 23 68 0 0 chr6 142918279 142918323 -46361231 + AT_rich Low_complexity Low_complexity 1 44 0 845 265 68 4 chr6 142918332 142918566 -46360988 - MIR SINE MIR -5 257 9 1803 188 34 6 chr6 142918730 142919082 -46360472 + MLT1A1 LTR MaLR 1 362 -3 190 267 67 33 chr6 142919421 142919481 -46360073 + MIR SINE MIR 17 78 -184 28 0 0 0 chr6 142922444 142922472 -46357082 + AT_rich Low_complexity Low_complexity 1 28 0 7091 53 6 6 chr6 142924999 142926311 -46353243 + L1PA5 LINE L1 4843 6154 0 361 267 87 63 chr6 142927992 142928198 -46351356 - MIR SINE MIR -19 243 33 217 233 33 0 chr6 142928284 142928344 -46351210 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 288 338 0 0 chr6 142928681 142928752 -46350802 + MIR3 SINE MIR 127 197 -11 190 373 0 0 chr6 142930699 142930758 -46348796 + L3 LINE CR1 36 94 -1483 * 197 227 23 0 chr6 142930755 142930799 -46348755 + L2 LINE L2 3222 3266 -6 1947 137 0 3 chr6 142931052 142931395 -46348159 - AluSg SINE Alu 0 310 1 840 351 49 24 chr6 142931402 142931812 -46347742 + L3 LINE CR1 425 844 -733 22 0 0 0 chr6 142932145 142932167 -46347387 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr6 142933521 142933564 -46345990 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 142933864 142933885 -46345669 + AT_rich Low_complexity Low_complexity 1 21 0 2220 115 0 0 chr6 142938172 142938468 -46341086 + AluSx SINE Alu 1 296 -16 1798 143 32 0 chr6 142938468 142938747 -46340807 + AluSg SINE Alu 1 288 -22 198 0 0 0 chr6 142938754 142938776 -46340778 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 745 295 64 3 chr6 142939069 142939398 -46340156 - L1MEc LINE L1 -4918 1478 1130 1643 299 97 20 chr6 142939413 142940265 -46339289 - L1MEc LINE L1 -5357 1039 122 364 358 16 26 chr6 142941978 142942168 -46337386 + MER5A DNA MER1_type 1 188 -1 563 246 15 84 chr6 142943323 142943526 -46336028 + MER5A DNA MER1_type 1 189 0 328 300 172 65 chr6 142943787 142943913 -46335641 - MIR SINE MIR -10 252 141 1387 208 78 70 chr6 142943913 142944413 -46335141 + MLT1D LTR MaLR 1 504 -1 328 300 172 65 chr6 142944413 142944515 -46335039 - MIR SINE MIR -121 141 17 21 36 0 0 chr6 142945012 142945040 -46334514 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr6 142945328 142945353 -46334201 + AT_rich Low_complexity Low_complexity 1 25 0 222 368 104 14 chr6 142945924 142946068 -46333486 + MIR SINE MIR 50 206 -56 1029 235 22 64 chr6 142946105 142946318 -46333236 - MLT1A1 LTR MaLR 0 365 168 189 0 0 0 chr6 142946318 142946339 -46333215 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1029 235 22 64 chr6 142946339 142946436 -46333118 - MLT1A1 LTR MaLR -197 168 68 557 275 34 0 chr6 142948124 142948273 -46331281 - MER58 DNA MER1_type -187 154 1 225 333 28 14 chr6 142948589 142948661 -46330893 + MIR SINE MIR 38 110 -98 450 286 81 62 chr6 142948874 142949264 -46330290 + L2 LINE L2 2652 3063 -250 31150 33 5 1 chr6 142949265 142953812 -46325742 + L1PA3 LINE L1 1589 6154 -1 398 349 76 16 chr6 142953834 142954083 -46325471 + L2 LINE L2 3050 3313 0 24 53 0 0 chr6 142954544 142954582 -46324972 + AT_rich Low_complexity Low_complexity 1 38 0 2335 80 0 13 chr6 142955046 142955357 -46324197 + AluY SINE Alu 1 307 -4 185 108 27 0 chr6 142955882 142955919 -46323635 + (CA)n Simple_repeat Simple_repeat 2 39 0 342 172 0 0 chr6 142958829 142958887 -46320667 - THE1C LTR MaLR 0 428 371 * 1291 159 55 19 chr6 142958875 142959132 -46320422 - THE1C LTR MaLR -109 266 1 1653 179 7 14 chr6 142959453 142959750 -46319804 + AluJo SINE Alu 1 295 -17 201 322 116 8 chr6 142959974 142960095 -46319459 - L2 LINE L2 -921 2393 2260 252 213 0 0 chr6 142960100 142960161 -46319393 + (CATA)n Simple_repeat Simple_repeat 2 62 0 369 298 87 48 chr6 142960246 142960498 -46319056 + L1MD2 LINE L1 4961 5222 -924 291 299 143 38 chr6 142960523 142961146 -46318408 + L1MD2 LINE L1 5258 5849 -317 23 0 0 0 chr6 142961302 142961325 -46318229 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr6 142961355 142961387 -46318167 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr6 142961924 142961947 -46317607 + AT_rich Low_complexity Low_complexity 1 23 0 628 124 0 0 chr6 142964615 142964704 -46314850 - FLAM_A SINE Alu -19 123 35 581 109 22 0 chr6 142964797 142964889 -46314665 - MER39 LTR ERV1 -18 689 596 1522 164 14 11 chr6 142964989 142965264 -46314290 - AluJo SINE Alu -36 276 1 26 0 0 0 chr6 142966335 142966361 -46313193 + AT_rich Low_complexity Low_complexity 1 26 0 1285 153 48 26 chr6 142966361 142966589 -46312965 - AluJb SINE Alu -25 287 55 198 0 0 0 chr6 142966980 142967002 -46312552 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 22 35 0 0 chr6 142969668 142969697 -46309857 + AT_rich Low_complexity Low_complexity 1 29 0 1462 141 40 23 chr6 142971166 142971621 -46307933 + MER51A LTR ERV1 1 625 -9 24 32 0 0 chr6 142974093 142974124 -46305430 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr6 142974275 142974310 -46305244 + AT_rich Low_complexity Low_complexity 1 35 0 394 330 75 5 chr6 142974476 142974676 -46304878 + LTR67 LTR ERVL 47 260 -297 510 323 114 46 chr6 142974863 142975686 -46303868 + L2 LINE L2 2349 3218 -95 180 222 93 19 chr6 142975855 142975909 -46303645 + MIR SINE MIR 84 141 -121 4286 130 56 28 chr6 142976654 142977582 -46301972 + Tigger1 DNA MER2_type 1 2335 -83 303 202 202 19 chr6 142978515 142978619 -46300935 - MIR SINE MIR -70 192 70 216 0 0 0 chr6 142980113 142980137 -46299417 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 551 370 102 32 chr6 142980142 142980644 -46298910 - L2 LINE L2 -420 2894 2358 1493 182 113 85 chr6 142981113 142981575 -46297979 + MLT2B1 LTR ERVL 1 480 -40 261 0 0 0 chr6 142981575 142981604 -46297950 + (TG)n Simple_repeat Simple_repeat 2 30 0 1493 182 113 85 chr6 142981604 142981647 -46297907 + MLT2B1 LTR ERVL 480 520 0 1566 229 80 19 chr6 142981866 142982351 -46297203 + Charlie1b DNA MER1_type 5 519 -4 805 227 6 6 chr6 142982668 142982844 -46296710 + LTR41 LTR ERVL 2 177 -596 358 223 8 41 chr6 142983179 142983300 -46296254 + LTR41 LTR ERVL 650 766 -7 450 291 45 71 chr6 142984240 142984662 -46294892 - L1ME4a LINE L1 -101 6020 5610 3425 75 24 0 chr6 142984668 142985136 -46294418 - L1PA7 LINE L1 -3 6151 5673 186 43 0 0 chr6 142985659 142985682 -46293872 + (CAA)n Simple_repeat Simple_repeat 2 24 0 418 340 67 43 chr6 142985765 142986186 -46293368 + L2 LINE L2 1836 2266 -1048 320 315 74 6 chr6 142988267 142988429 -46291125 - Charlie8 DNA MER1_type -2212 205 33 413 239 8 39 chr6 142988990 142989120 -46290434 - MER94 DNA DNA -5 129 4 2211 96 10 0 chr6 142993029 142993330 -46286224 + AluSg SINE Alu 1 304 -6 519 252 22 7 chr6 142993354 142993493 -46286061 + Tigger6 DNA MER2_type 1183 1323 -274 3758 211 70 27 chr6 142993493 142994533 -46285021 - L1MD2 LINE L1 -3 6356 5272 723 259 47 0 chr6 142994542 142994774 -46284780 + Tigger6 DNA MER2_type 1355 1597 0 475 316 69 17 chr6 142994834 142995096 -46284458 - L2 LINE L2 -232 3040 2768 983 121 0 0 chr6 142995286 142995427 -46284127 - AluSg/x SINE Alu -8 304 164 2123 233 102 48 chr6 142996805 142997553 -46282001 + L1ME3A LINE L1 5383 6170 0 2163 110 3 0 chr6 142997993 142998292 -46281262 + AluSg SINE Alu 1 300 -10 22 0 0 0 chr6 142998717 142998739 -46280815 + AT_rich Low_complexity Low_complexity 1 22 0 42 20 0 0 chr6 142999380 142999429 -46280125 + AT_rich Low_complexity Low_complexity 1 49 0 229 327 89 0 chr6 142999861 142999962 -46279592 - MIR SINE MIR -2 260 151 204 40 0 0 chr6 143001277 143001302 -46278252 + (CA)n Simple_repeat Simple_repeat 2 26 0 186 71 0 0 chr6 143001304 143001332 -46278222 + (A)n Simple_repeat Simple_repeat 1 28 0 24 32 0 0 chr6 143001363 143001394 -46278160 + AT_rich Low_complexity Low_complexity 1 31 0 340 351 73 12 chr6 143001921 143002086 -46277468 - MIR SINE MIR -43 219 45 575 282 117 44 chr6 143002215 143002513 -46277041 - MLT1L LTR MaLR -13 602 283 1116 112 168 0 chr6 143002662 143002859 -46276695 - MER30 DNA MER1_type 0 230 1 492 214 55 66 chr6 143003135 143003434 -46276120 - LTR37B LTR ERV1 -78 390 90 241 358 86 16 chr6 143003877 143004064 -46275490 + L3b LINE CR1 1309 1508 -75 184 267 0 67 chr6 143004749 143004809 -46274745 - MIR SINE MIR -131 131 76 197 65 32 0 chr6 143005031 143005062 -46274492 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 24 0 0 0 chr6 143006209 143006233 -46273321 + AT_rich Low_complexity Low_complexity 1 24 0 454 190 164 26 chr6 143006304 143006420 -46273134 + MIR SINE MIR 114 245 -17 309 75 0 0 chr6 143006981 143007021 -46272533 + MER30 DNA MER1_type 1 40 -190 * 450 176 0 0 chr6 143007020 143007088 -46272466 + MER30 DNA MER1_type 163 230 0 25 0 0 0 chr6 143007282 143007307 -46272247 + AT_rich Low_complexity Low_complexity 1 25 0 64 26 0 0 chr6 143007578 143007656 -46271898 + AT_rich Low_complexity Low_complexity 1 78 0 2116 110 0 0 chr6 143009436 143009755 -46269799 + AluSq SINE Alu 4 322 0 1302 175 70 64 chr6 143011435 143011778 -46267776 - MER7A DNA MER2_type -2 344 2 389 127 14 28 chr6 143011987 143012058 -46267496 - MSTA LTR MaLR 0 426 357 1596 208 67 20 chr6 143012201 143012557 -46266997 - MSTA LTR MaLR -55 373 1 187 333 16 16 chr6 143015260 143015323 -46264231 + L2 LINE L2 3238 3300 -13 213 356 96 7 chr6 143016598 143016744 -46262810 - MIR SINE MIR -12 250 92 362 258 119 20 chr6 143017172 143017323 -46262231 + L2 LINE L2 3145 3310 -3 184 293 135 30 chr6 143017615 143017748 -46261806 + MER5B DNA MER1_type 32 178 0 313 286 36 45 chr6 143018818 143018930 -46260624 + MIR3 SINE MIR 74 184 -24 24 32 0 0 chr6 143020251 143020282 -46259272 + AT_rich Low_complexity Low_complexity 1 31 0 212 341 110 10 chr6 143020405 143020520 -46259034 - MIR SINE MIR -72 136 40 948 178 0 6 chr6 143021848 143022011 -46257543 + AluJb SINE Alu 136 297 -15 407 311 112 6 chr6 143023287 143023448 -46256106 + MER5B DNA MER1_type 1 178 0 2261 262 143 10 chr6 143024050 143024909 -46254645 + L2 LINE L2 2045 3016 -297 423 0 0 0 chr6 143024941 143024988 -46254566 + (TTA)n Simple_repeat Simple_repeat 3 49 0 459 267 7 59 chr6 143024990 143025090 -46254464 + L2 LINE L2 3182 3286 -27 2138 128 22 30 chr6 143025090 143025457 -46254097 - THE1B LTR MaLR 0 364 1 10696 114 12 10 chr6 143025457 143027034 -46252520 - THE1B-int LTR MaLR 0 1580 1 2148 129 19 40 chr6 143027034 143027406 -46252148 - THE1B LTR MaLR 0 364 1 459 267 7 59 chr6 143027406 143027438 -46252116 + L2 LINE L2 3283 3309 -4 30 69 0 0 chr6 143028222 143028280 -46251274 + AT_rich Low_complexity Low_complexity 1 58 0 253 333 37 0 chr6 143029205 143029286 -46250268 + MIR SINE MIR 3 86 -176 250 296 148 19 chr6 143030279 143030387 -46249167 - L2 LINE L2 -1 3312 3191 361 208 125 21 chr6 143031911 143032007 -46247547 + MLT1L LTR MaLR 195 300 -315 32 26 0 0 chr6 143032126 143032165 -46247389 + AT_rich Low_complexity Low_complexity 1 39 0 1245 65 6 18 chr6 143032907 143033076 -46246478 + AluSg/x SINE Alu 145 311 -1 186 118 0 0 chr6 143034745 143034779 -46244775 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 238 260 57 57 chr6 143035168 143035291 -46244263 - LTR67 LTR ERVL -8 549 427 345 354 99 36 chr6 143035368 143035761 -46243793 - L2 LINE L2 -1 3312 2895 203 368 11 11 chr6 143036204 143036299 -46243255 + L2 LINE L2 2957 3051 -221 287 259 105 62 chr6 143036514 143036680 -46242874 - MIR SINE MIR -52 156 13 269 287 83 0 chr6 143037415 143037523 -46242031 + MIR SINE MIR 101 217 -45 704 263 60 32 chr6 143037789 143038006 -46241548 - MER58A DNA MER1_type -1 223 1 327 270 67 0 chr6 143038763 143038852 -46240702 - MIR SINE MIR -161 101 7 251 196 22 0 chr6 143039488 143039534 -46240020 + L1ME LINE L1 26 72 -5998 180 77 0 0 chr6 143041786 143041812 -46237742 + (CA)n Simple_repeat Simple_repeat 2 27 0 204 40 0 0 chr6 143041812 143041837 -46237717 + (TG)n Simple_repeat Simple_repeat 1 25 0 832 188 6 6 chr6 143042320 143042485 -46237069 + FRAM SINE Alu 1 165 -1 1906 136 19 23 chr6 143043754 143044063 -46235491 + AluJb SINE Alu 5 312 0 242 54 0 27 chr6 143044704 143044741 -46234813 + (CA)n Simple_repeat Simple_repeat 1 36 0 575 53 13 0 chr6 143045335 143045411 -46234143 - MADE1 DNA Mariner -1 79 3 2016 152 133 0 chr6 143045659 143046035 -46233519 - MSTB LTR MaLR 0 426 1 1746 219 38 7 chr6 143046322 143046773 -46232781 - MLT1C LTR MaLR -2 465 1 22 56 0 0 chr6 143047014 143047050 -46232504 + AT_rich Low_complexity Low_complexity 1 36 0 274 263 38 0 chr6 143047800 143047880 -46231674 + GA-rich Low_complexity Low_complexity 2 84 0 21 57 0 0 chr6 143048522 143048557 -46230997 + AT_rich Low_complexity Low_complexity 1 35 0 326 127 0 16 chr6 143048681 143048744 -46230810 + (TC)n Simple_repeat Simple_repeat 2 63 0 779 242 28 0 chr6 143049252 143049531 -46230023 - AluJo SINE Alu 0 406 123 21 57 0 0 chr6 143049902 143049937 -46229617 + AT_rich Low_complexity Low_complexity 1 35 0 304 310 70 0 chr6 143049968 143050097 -46229457 + HAL1 LINE L1 4 141 -2366 335 347 59 29 chr6 143050569 143050808 -46228746 - L1ME LINE L1 -558 5563 5318 379 299 75 7 chr6 143050922 143051069 -46228485 - MIR SINE MIR -87 175 19 2456 198 27 94 chr6 143051605 143052346 -46227208 - L1MD1 LINE L1 0 6636 5946 2270 233 150 26 chr6 143052330 143052969 -46226585 - L1MD1 LINE L1 -1222 5318 4523 * 1971 80 80 4 chr6 143052969 143053244 -46226310 - AluY SINE Alu -15 296 1 2270 233 150 26 chr6 143053244 143053552 -46226002 - L1MD1 LINE L1 -2017 4523 4254 415 211 19 96 chr6 143053564 143053773 -46225781 - L1MD1 LINE L1 -2929 3611 3419 1992 158 12 9 chr6 143053783 143054118 -46225436 + MER2 DNA MER2_type 10 345 0 3735 219 66 6 chr6 143054126 143055814 -46223740 - L1MD1 LINE L1 -3123 3417 1630 4555 231 86 57 chr6 143055819 143055941 -46223613 + L1ME1 LINE L1 3463 3580 -2566 1111 87 7 0 chr6 143055941 143056090 -46223464 + L1PA11 LINE L1 6024 6173 -1 4555 231 86 57 chr6 143056090 143056406 -46223148 + L1ME1 LINE L1 3580 3886 -2260 673 209 0 0 chr6 143056406 143056521 -46223033 + FLAM_A SINE Alu 2 116 -17 4555 231 86 57 chr6 143056521 143057471 -46222083 + L1ME1 LINE L1 3886 4915 -1231 1984 151 6 20 chr6 143057471 143057815 -46221739 - MER44D DNA MER2_type 0 609 1 4555 231 86 57 chr6 143057815 143058184 -46221370 + L1ME1 LINE L1 4915 5272 -874 2969 168 111 121 chr6 143058238 143058550 -46221004 + L1MC3 LINE L1 6807 7121 -664 254 308 33 0 chr6 143058550 143058641 -46220913 + MLT1F1 LTR MaLR 37 130 -437 2969 168 111 121 chr6 143058641 143059224 -46220330 + L1MC3 LINE L1 7121 7782 -3 2849 241 35 33 chr6 143059220 143060045 -46219509 + L1ME1 LINE L1 5312 6138 -28 * 858 179 0 4 chr6 143060362 143060629 -46218925 + GA-rich Low_complexity Low_complexity 1 265 0 383 248 81 7 chr6 143061242 143061497 -46218057 - MER46C DNA MER2_type 0 338 2 617 265 0 0 chr6 143061755 143061887 -46217667 - FLAM_A SINE Alu 0 133 2 25 0 0 0 chr6 143062470 143062495 -46217059 + AT_rich Low_complexity Low_complexity 1 25 0 1653 123 4 4 chr6 143062531 143062767 -46216787 + AluSx SINE Alu 3 238 -74 2348 83 3 3 chr6 143063039 143063341 -46216213 + AluSp SINE Alu 1 302 -11 2996 224 96 78 chr6 143064985 143065910 -46213644 - MER69B DNA AcHobo -1301 1225 273 963 187 9 36 chr6 143065910 143066135 -46213419 - MER20 DNA MER1_type 0 219 1 2996 224 96 78 chr6 143066135 143066354 -46213200 - MER69B DNA AcHobo -2253 273 60 189 232 24 85 chr6 143066873 143066955 -46212599 - MIR SINE MIR -94 168 92 586 330 41 5 chr6 143067368 143067586 -46211968 + MIR SINE MIR 7 232 -30 309 197 189 16 chr6 143067894 143068016 -46211538 + L1ME4a LINE L1 5978 6120 -1 193 387 84 0 chr6 143068167 143068286 -46211268 - MIR3 SINE MIR -21 187 59 2172 89 3 7 chr6 143070778 143071070 -46208484 + AluSg SINE Alu 1 291 -19 216 220 0 17 chr6 143071134 143071193 -46208361 + A-rich Low_complexity Low_complexity 2 59 0 2274 40 0 40 chr6 143071388 143071689 -46207865 - AluY SINE Alu -22 289 1 210 383 52 0 chr6 143071724 143071839 -46207715 - L3 LINE CR1 -202 1375 1255 551 258 33 40 chr6 143071890 143072041 -46207513 + L2 LINE L2 3163 3312 -1 224 26 0 79 chr6 143072332 143072370 -46207184 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1293 187 71 15 chr6 143072373 143072518 -46207036 - AluJb SINE Alu -30 282 147 279 0 0 0 chr6 143072518 143072549 -46207005 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1293 187 71 15 chr6 143072549 143072670 -46206884 - AluJb SINE Alu -165 147 1 212 271 82 35 chr6 143073128 143073213 -46206341 - L2 LINE L2 0 3272 3184 473 265 238 0 chr6 143073749 143073900 -46205654 + MIR SINE MIR 18 204 -58 2247 213 12 41 chr6 143073900 143074417 -46205137 - MLT1D LTR MaLR -2 503 2 303 246 14 0 chr6 143075192 143075261 -46204293 - L1MC4 LINE L1 -1339 6703 6634 392 328 20 53 chr6 143077037 143077281 -46202273 + MIR SINE MIR 27 262 0 2403 87 0 0 chr6 143077464 143077762 -46201792 - AluSc SINE Alu -11 298 1 372 123 0 0 chr6 143077809 143077882 -46201672 + (TA)n Simple_repeat Simple_repeat 1 73 0 227 312 0 26 chr6 143078129 143078206 -46201348 - MER103 DNA DNA -91 75 1 2221 135 0 0 chr6 143079324 143079636 -46199918 - AluSx SINE Alu 0 312 1 344 326 85 27 chr6 143079817 143080041 -46199513 - MIR SINE MIR -5 257 21 399 113 75 12 chr6 143081690 143081770 -46197784 - L1PA16 LINE L1 -2 6164 6080 335 143 0 0 chr6 143081770 143081819 -46197735 + L1PA16 LINE L1 6036 6084 -82 26 0 0 0 chr6 143083181 143083207 -46196347 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chr6 143083317 143083366 -46196188 + AT_rich Low_complexity Low_complexity 1 49 0 29 0 0 0 chr6 143083927 143083956 -46195598 + AT_rich Low_complexity Low_complexity 1 29 0 4536 175 17 28 chr6 143085204 143086125 -46193429 + L1MB8 LINE L1 5263 6173 -5 2592 48 0 0 chr6 143088318 143088629 -46190925 + AluY SINE Alu 1 311 0 431 310 112 29 chr6 143089233 143089475 -46190079 - MIR SINE MIR 0 262 1 508 155 39 29 chr6 143090264 143090367 -46189187 - FLAM_C SINE Alu -16 127 24 240 192 58 19 chr6 143090369 143090473 -46189081 + (TATAA)n Simple_repeat Simple_repeat 4 111 0 204 205 55 39 chr6 143090412 143090530 -46189024 + (TA)n Simple_repeat Simple_repeat 2 124 -6 * 2266 96 0 0 chr6 143090530 143090821 -46188733 - AluY SINE Alu -20 291 1 204 205 55 39 chr6 143090821 143090829 -46188725 + (TA)n Simple_repeat Simple_repeat 124 130 0 23 33 0 0 chr6 143091055 143091085 -46188469 + AT_rich Low_complexity Low_complexity 1 30 0 228 347 82 0 chr6 143091122 143091220 -46188334 + L3 LINE CR1 1291 1396 -181 258 286 63 16 chr6 143091225 143091351 -46188203 - L1MC4 LINE L1 -202 7840 7709 677 172 0 8 chr6 143091517 143091639 -46187915 - FLAM_C SINE Alu -12 121 1 1157 265 117 56 chr6 143091809 143092006 -46187548 - L1MC4 LINE L1 -554 7488 7305 1994 118 92 9 chr6 143092006 143092352 -46187202 - THE1C LTR MaLR 0 375 1 9229 116 46 46 chr6 143092352 143093931 -46185623 - THE1C-int LTR MaLR 0 1580 1 1910 136 79 17 chr6 143093931 143094284 -46185270 - THE1C LTR MaLR 0 375 1 1157 265 117 56 chr6 143094284 143094800 -46184754 - L1MC4 LINE L1 -736 7306 6729 326 330 64 4 chr6 143094912 143095148 -46184406 + L1ME3A LINE L1 5149 5398 -748 365 284 132 53 chr6 143095245 143095673 -46183881 + L1ME3A LINE L1 5503 5962 -208 3014 221 74 22 chr6 143095707 143096635 -46182919 + L1ME1 LINE L1 5168 6128 -38 40 37 0 0 chr6 143096783 143096837 -46182717 + AT_rich Low_complexity Low_complexity 1 54 0 189 368 79 0 chr6 143097510 143097586 -46181968 + L2 LINE L2 3210 3291 -22 488 184 11 0 chr6 143098067 143098154 -46181400 - 5S rRNA rRNA -33 88 1 1993 113 7 30 chr6 143098627 143098928 -46180626 + AluSx SINE Alu 1 294 -18 1029 304 84 20 chr6 143099131 143099571 -46179983 - LTR33 LTR ERVL -52 469 2 950 167 86 43 chr6 143100081 143100291 -46179263 - MER20 DNA MER1_type 0 219 1 266 269 29 29 chr6 143103194 143103298 -46176256 + MLT1J2 LTR MaLR 15 118 -332 259 315 135 34 chr6 143103357 143103535 -46176019 + MLT1J2 LTR MaLR 255 450 0 1469 184 6 34 chr6 143103753 143104073 -46175481 + AluJo SINE Alu 1 311 -1 195 167 0 0 chr6 143104267 143104309 -46175245 + (ATG)n Simple_repeat Simple_repeat 1 42 0 201 121 0 0 chr6 143104460 143104493 -46175061 + (T)n Simple_repeat Simple_repeat 1 33 0 385 157 0 45 chr6 143106674 143106763 -46172791 - L1PA11 LINE L1 0 6174 6090 2393 80 0 0 chr6 143106779 143107078 -46172476 - AluSc SINE Alu -10 299 1 202 350 50 0 chr6 143107130 143107230 -46172324 + L2 LINE L2 1803 1907 -1407 280 333 13 0 chr6 143107615 143107693 -46171861 + L2 LINE L2 3183 3261 -11 994 132 0 0 chr6 143108001 143108145 -46171409 - AluSc SINE Alu -11 298 155 21 0 0 0 chr6 143109612 143109633 -46169921 + AT_rich Low_complexity Low_complexity 1 21 0 582 262 74 64 chr6 143109860 143110253 -46169301 + MER34 LTR ERV1 4 400 -142 2765 281 46 22 chr6 143110310 143112123 -46167431 + L1M3e LINE L1 1 2956 -4150 775 202 28 53 chr6 143112125 143112372 -46167182 - L1M4c LINE L1 -3917 2467 2227 587 247 35 12 chr6 143112392 143112562 -46166992 + L1MA10 LINE L1 6161 6334 0 1072 291 47 39 chr6 143112675 143113211 -46166343 - MLT1L LTR MaLR -10 605 66 301 390 76 40 chr6 143114107 143114435 -46165119 + L2 LINE L2 2923 3262 -10 5372 112 8 0 chr6 143114574 143115323 -46164231 + HSMAR1 DNA Mariner 1 755 -532 4677 98 62 4 chr6 143115323 143115689 -46163865 + L1PB1 LINE L1 5398 5742 -409 458 17 17 0 chr6 143115689 143115748 -46163806 + (TG)n Simple_repeat Simple_repeat 2 61 0 4677 98 62 4 chr6 143115748 143116094 -46163460 + L1PB1 LINE L1 5742 6151 0 7465 26 7 0 chr6 143117359 143118853 -46160701 - L1PA4 LINE L1 -1 6154 4652 246 176 0 0 chr6 143119514 143119565 -46159989 + (CA)n Simple_repeat Simple_repeat 2 52 0 1211 249 12 0 chr6 143119568 143119809 -46159745 - MIR SINE MIR -11 251 8 27 49 0 0 chr6 143122737 143122778 -46156776 + AT_rich Low_complexity Low_complexity 1 41 0 2039 102 67 0 chr6 143124807 143125092 -46154462 + AluSx SINE Alu 1 304 -8 241 282 0 29 chr6 143125171 143125274 -46154280 + (TA)n Simple_repeat Simple_repeat 1 100 0 2061 159 17 25 chr6 143126351 143126753 -46152801 - L1MA7 LINE L1 0 6291 5893 551 244 23 83 chr6 143127680 143127788 -46151766 + L1ME3A LINE L1 5947 6037 -133 2891 6 0 0 chr6 143127788 143128106 -46151448 - AluYb8 SINE Alu 0 318 1 551 244 23 83 chr6 143128106 143128214 -46151340 + L1ME3A LINE L1 6037 6150 -20 31 26 0 0 chr6 143128214 143128252 -46151302 + AT_rich Low_complexity Low_complexity 1 38 0 863 304 83 28 chr6 143129101 143129640 -46149914 - MLT1K LTR MaLR -10 578 10 237 397 17 9 chr6 143131172 143131288 -46148266 + L2 LINE L2 3169 3285 -28 225 224 61 0 chr6 143131339 143131388 -46148166 + L2 LINE L2 3262 3313 0 2141 108 3 7 chr6 143133446 143133742 -46145812 + AluSp SINE Alu 15 309 -4 212 286 134 27 chr6 143134649 143134761 -46144793 - MIR SINE MIR -37 225 102 805 76 6 8 chr6 143134810 143134940 -46144614 + MER30B DNA MER1_type 1 110 -80 4884 72 3 9 chr6 143134941 143135592 -46143962 - L1PA8A LINE L1 -6 6125 5479 1038 103 12 0 chr6 143135592 143135757 -46143797 - L1PA8A LINE L1 -875 5271 5105 703 125 39 0 chr6 143135757 143135861 -46143693 + MER30B DNA MER1_type 122 229 -1 193 275 0 0 chr6 143136974 143137014 -46142540 + MIR SINE MIR 4 43 -219 1275 232 120 60 chr6 143137107 143137606 -46141948 - MLT1D LTR MaLR -1 653 1 23 105 0 0 chr6 143137773 143137859 -46141695 + AT_rich Low_complexity Low_complexity 1 86 0 258 197 15 30 chr6 143138663 143138729 -46140825 + L2 LINE L2 3182 3246 -67 234 179 0 0 chr6 143139911 143139950 -46139604 + Alu SINE Alu 85 123 -179 460 147 27 0 chr6 143139990 143140065 -46139489 + FRAM SINE Alu 69 145 -31 2279 225 90 12 chr6 143140784 143141371 -46138183 + L1ME2 LINE L1 333 965 -5431 715 223 54 0 chr6 143141379 143141545 -46138009 - L1P LINE L1 -3537 2609 2435 210 119 48 0 chr6 143141545 143141587 -46137967 + (TTAAG)n Simple_repeat Simple_repeat 4 47 0 2584 220 89 30 chr6 143141674 143142382 -46137172 + L1ME2 LINE L1 5013 5810 -423 6796 18 6 1 chr6 143142382 143143180 -46136374 + L1PA3 LINE L1 5354 6155 0 2584 220 89 30 chr6 143143180 143143621 -46135933 + L1ME2 LINE L1 5810 6224 -9 382 250 12 0 chr6 143143646 143143726 -46135828 + HERVL LTR ERVL 3431 3511 -2143 369 319 129 0 chr6 143143894 143144057 -46135497 + HERVL LTR ERVL 3626 3809 -1955 3339 314 70 19 chr6 143144163 143145046 -46134508 + HERVL LTR ERVL 3943 4928 -836 1717 142 65 44 chr6 143145046 143145413 -46134141 - THE1C LTR MaLR 0 375 1 3339 314 70 19 chr6 143145413 143145963 -46133591 + HERVL LTR ERVL 4928 5449 -315 183 80 0 0 chr6 143146152 143146177 -46133377 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 238 239 28 14 chr6 143146699 143146770 -46132784 + LTR33A LTR ERVL 452 523 0 1855 202 50 12 chr6 143146960 143147376 -46132178 - MSTB1 LTR MaLR 0 432 1 25 65 0 0 chr6 143147633 143147679 -46131875 + AT_rich Low_complexity Low_complexity 1 46 0 539 314 64 26 chr6 143148872 143149116 -46130438 - MIR SINE MIR 0 262 14 324 295 20 67 chr6 143150025 143150174 -46129380 + MIR3 SINE MIR 62 203 -5 1033 308 71 27 chr6 143151574 143152051 -46127503 - MLT1D LTR MaLR -7 498 1 772 283 108 9 chr6 143153001 143153457 -46126097 - L1ME4a LINE L1 -3 6118 5618 2399 88 0 0 chr6 143153469 143153765 -46125789 - AluY SINE Alu -15 296 1 208 295 0 0 chr6 143153818 143153879 -46125675 + MIR SINE MIR 197 257 -5 262 178 28 28 chr6 143155207 143155314 -46124240 + GA-rich Low_complexity Low_complexity 3 109 0 270 56 0 0 chr6 143155949 143155985 -46123569 + (TG)n Simple_repeat Simple_repeat 2 37 0 228 324 166 22 chr6 143156595 143156734 -46122820 + MIR SINE MIR 98 256 -6 24 91 0 0 chr6 143157032 143157098 -46122456 + AT_rich Low_complexity Low_complexity 1 66 0 2630 29 7 3 chr6 143158044 143158351 -46121203 - AluY SINE Alu -3 308 1 288 0 0 0 chr6 143158843 143158875 -46120679 + (A)n Simple_repeat Simple_repeat 1 32 0 213 197 0 0 chr6 143159424 143159490 -46120064 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 194 358 37 51 chr6 143159533 143159748 -46119806 - L2 LINE L2 -95 3177 2966 1926 127 0 41 chr6 143160285 143160600 -46118954 - AluJb SINE Alu -10 302 1 24 0 0 0 chr6 143161773 143161797 -46117757 + AT_rich Low_complexity Low_complexity 1 24 0 756 304 123 34 chr6 143162144 143162812 -46116742 + L2 LINE L2 1915 2641 -673 21 0 0 0 chr6 143163065 143163086 -46116468 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr6 143163367 143163392 -46116162 + (CA)n Simple_repeat Simple_repeat 1 25 0 265 319 21 64 chr6 143164754 143164895 -46114659 - L2 LINE L2 0 3313 3179 2453 72 0 3 chr6 143167654 143167960 -46111594 - AluY SINE Alu -6 305 1 29 28 0 0 chr6 143168296 143168332 -46111222 + AT_rich Low_complexity Low_complexity 1 36 0 2185 121 0 10 chr6 143168372 143168685 -46110869 + AluSg SINE Alu 1 310 0 377 270 49 76 chr6 143168912 143169097 -46110457 - L2 LINE L2 -6 3307 3128 1649 141 4 0 chr6 143169195 143169484 -46110070 - AluSx SINE Alu 0 332 43 2252 58 0 7 chr6 143169623 143169901 -46109653 + AluY SINE Alu 33 308 -3 234 342 60 0 chr6 143170320 143170437 -46109117 + MIR SINE MIR 52 175 -87 268 127 36 0 chr6 143170551 143170606 -46108948 + A-rich Low_complexity Low_complexity 4 60 0 247 125 0 69 chr6 143170760 143170832 -46108722 + (TGAA)n Simple_repeat Simple_repeat 1 67 0 605 204 86 20 chr6 143170902 143171054 -46108500 + MER5B DNA MER1_type 4 165 -13 297 0 0 0 chr6 143171337 143171370 -46108184 + (TC)n Simple_repeat Simple_repeat 2 34 0 286 214 0 43 chr6 143171383 143171453 -46108101 + MER5B DNA MER1_type 64 130 -48 2043 108 22 0 chr6 143171601 143171878 -46107676 - AluSx SINE Alu -14 298 16 1451 174 4 15 chr6 143172244 143172508 -46107046 - AluJb SINE Alu -14 298 38 4995 181 12 18 chr6 143172728 143173816 -46105738 - L1 LINE L1 -872 5274 4193 554 283 79 58 chr6 143173810 143174227 -46105327 - L1ME LINE L1 -303 5818 5393 * 577 195 18 0 chr6 143174246 143174359 -46105195 - AluSg/x SINE Alu -14 295 181 22 0 0 0 chr6 143174361 143174383 -46105171 + AT_rich Low_complexity Low_complexity 1 22 0 2011 132 4 0 chr6 143174393 143174707 -46104847 - AluSx SINE Alu 0 315 1 1211 147 0 5 chr6 143175016 143175220 -46104334 - L1P LINE L1 -1090 5056 4854 1654 99 68 4 chr6 143175220 143175476 -46104078 + L1PA11 LINE L1 5895 6174 0 22 35 0 0 chr6 143175567 143175596 -46103958 + AT_rich Low_complexity Low_complexity 1 29 0 209 220 20 0 chr6 143175652 143175702 -46103852 + (TATG)n Simple_repeat Simple_repeat 4 54 0 361 281 84 30 chr6 143175824 143176027 -46103527 - L1 LINE L1 -3655 2491 2278 1647 163 63 0 chr6 143178131 143178432 -46101122 + AluJb SINE Alu 1 318 0 12692 159 31 45 chr6 143178457 143179043 -46100511 + L1MB3 LINE L1 34 627 -5755 2741 126 12 2 chr6 143179043 143179471 -46100083 + MER57B LTR ERV1 3 434 0 12692 159 31 45 chr6 143179471 143180536 -46099018 + L1MB3 LINE L1 627 1706 -4676 1614 195 10 27 chr6 143180536 143180834 -46098720 + AluJo SINE Alu 1 293 -19 12692 159 31 45 chr6 143180834 143181694 -46097860 + L1MB3 LINE L1 1706 2577 -3805 2274 100 3 3 chr6 143181694 143181993 -46097561 + AluSq SINE Alu 1 299 -14 12692 159 31 45 chr6 143181993 143182019 -46097535 + L1MB3 LINE L1 2577 2602 -3780 1947 134 9 37 chr6 143182019 143182340 -46097214 + AluSx SINE Alu 1 312 0 12692 159 31 45 chr6 143182340 143182782 -46096772 + L1MB3 LINE L1 2602 2965 -3417 246 213 0 0 chr6 143182782 143182829 -46096725 + LTR30 LTR ERV1 1 47 -675 1378 136 56 17 chr6 143182834 143183119 -46096435 + LTR12 LTR ERV1 55 2016 -422 262 293 10 0 chr6 143183119 143183218 -46096336 + LTR30 LTR ERV1 544 643 -79 650 140 0 0 chr6 143183220 143183320 -46096234 + LTR12 LTR ERV1 615 714 0 1826 239 38 74 chr6 143183334 143183485 -46096069 + L1MB3 LINE L1 2980 3135 -3247 464 224 0 28 chr6 143183485 143183592 -46095962 - U13 snRNA snRNA 0 104 1 1826 239 38 74 chr6 143183592 143184052 -46095502 + L1MB3 LINE L1 3135 3550 -2832 2079 145 0 0 chr6 143184052 143184349 -46095205 + AluSx SINE Alu 1 297 -15 1826 239 38 74 chr6 143184349 143184637 -46094917 + L1MB3 LINE L1 3550 3847 -2535 239 348 76 0 chr6 143185826 143185918 -46093636 + L2 LINE L2 3200 3298 -15 3533 185 31 37 chr6 143185919 143186677 -46092877 + L1MB3 LINE L1 4633 5394 -1025 630 160 0 38 chr6 143186677 143186808 -46092746 + L1MA8 LINE L1 6155 6280 -11 3533 185 31 37 chr6 143186808 143187131 -46092423 + L1MB3 LINE L1 5394 5704 -715 1951 113 3 18 chr6 143187131 143187415 -46092139 - AluSg SINE Alu -9 301 22 3533 185 31 37 chr6 143187415 143187724 -46091830 + L1MB3 LINE L1 5704 6013 -406 719 170 0 37 chr6 143187724 143187859 -46091695 + FLAM_A SINE Alu 11 140 -2 839 154 0 0 chr6 143187862 143187998 -46091556 + L1MB3 LINE L1 6067 6202 -217 792 220 14 38 chr6 143188105 143188314 -46091240 + AluJo SINE Alu 90 293 -19 2216 89 3 23 chr6 143188946 143189249 -46090305 + AluSc SINE Alu 3 299 -10 298 258 30 83 chr6 143189535 143189572 -46089982 - MIR SINE MIR -26 236 199 2046 115 14 3 chr6 143189572 143189860 -46089694 + AluSq SINE Alu 2 292 -21 298 258 30 83 chr6 143189860 143189954 -46089600 - MIR SINE MIR -63 199 112 237 316 59 26 chr6 143189993 143190145 -46089409 + MLT1K LTR MaLR 432 588 0 524 276 19 6 chr6 143190609 143190765 -46088789 + MLT1I LTR MaLR 1 158 -251 373 278 37 31 chr6 143190802 143190964 -46088590 + MLT1I LTR MaLR 243 405 -4 24 32 0 0 chr6 143190991 143191022 -46088532 + AT_rich Low_complexity Low_complexity 1 31 0 234 284 0 0 chr6 143192302 143192450 -46087104 + CT-rich Low_complexity Low_complexity 1 148 0 625 204 15 0 chr6 143193769 143193906 -46085648 + L1ME3 LINE L1 6000 6138 -24 947 200 99 42 chr6 143193915 143194247 -46085307 - MLT1B LTR MaLR 0 365 1 1858 124 85 25 chr6 143194357 143194711 -46084843 - THE1C LTR MaLR 0 375 1 314 304 34 0 chr6 143194954 143195102 -46084452 + GA-rich Low_complexity Low_complexity 2 154 0 666 274 7 7 chr6 143195135 143195335 -46084219 + MIR SINE MIR 9 207 -55 195 282 64 26 chr6 143196991 143197069 -46082485 + L2 LINE L2 3158 3238 -75 280 242 0 0 chr6 143197093 143197155 -46082399 + (CA)n Simple_repeat Simple_repeat 2 63 0 706 297 50 17 chr6 143197534 143197773 -46081781 - MIR SINE MIR -14 248 2 180 320 48 54 chr6 143201076 143201223 -46078331 + L2 LINE L2 1184 1329 -1985 27 29 0 0 chr6 143201588 143201622 -46077932 + AT_rich Low_complexity Low_complexity 1 34 0 599 299 71 0 chr6 143201793 143202017 -46077537 - HAL1 LINE L1 -776 1731 1492 1456 227 59 55 chr6 143202110 143202586 -46076968 - L1MC4 LINE L1 -143 7899 7422 361 229 10 10 chr6 143202598 143202694 -46076860 - L1M4 LINE L1 -3842 2304 2209 1351 243 65 33 chr6 143202914 143203433 -46076121 - L1MEc LINE L1 -3169 3046 2511 21089 159 17 11 chr6 143203452 143211104 -46068450 - L1MA1 LINE L1 -9 7712 15 715 256 28 103 chr6 143211105 143211796 -46067758 - L1MEc LINE L1 -3696 2521 1921 2269 96 0 3 chr6 143211870 143212161 -46067393 + AluSq SINE Alu 1 290 -23 33 0 0 0 chr6 143212164 143212197 -46067357 + AT_rich Low_complexity Low_complexity 1 33 0 698 110 0 0 chr6 143212303 143212403 -46067151 - HY3 scRNA scRNA -1 100 1 249 33 0 0 chr6 143214807 143214837 -46064717 + (TA)n Simple_repeat Simple_repeat 2 31 0 33 56 0 0 chr6 143215368 143215422 -46064132 + AT_rich Low_complexity Low_complexity 1 54 0 309 356 15 7 chr6 143215462 143215597 -46063957 - MIR3 SINE MIR -32 176 41 204 185 0 0 chr6 143216742 143216796 -46062758 + A-rich Low_complexity Low_complexity 1 54 0 1595 141 86 17 chr6 143216923 143217214 -46062340 + AluJb SINE Alu 1 311 -1 390 91 0 0 chr6 143217846 143217901 -46061653 + (CA)n Simple_repeat Simple_repeat 2 56 0 180 0 0 0 chr6 143219005 143219025 -46060529 + (TG)n Simple_repeat Simple_repeat 1 20 0 590 142 159 91 chr6 143219844 143220020 -46059534 - MER5A DNA MER1_type 0 189 2 263 266 184 24 chr6 143220489 143220696 -46058858 + MLT1K LTR MaLR 332 571 -17 1983 158 0 3 chr6 143221101 143221399 -46058155 - AluSx SINE Alu -15 297 1 487 285 108 28 chr6 143221781 143221995 -46057559 + MIR SINE MIR 20 250 -12 31 68 0 0 chr6 143222999 143223058 -46056496 + AT_rich Low_complexity Low_complexity 1 59 0 29 0 0 0 chr6 143223263 143223292 -46056262 + AT_rich Low_complexity Low_complexity 1 29 0 258 309 22 88 chr6 143223349 143223485 -46056069 + MIR SINE MIR 66 192 -70 2302 106 6 0 chr6 143223586 143223964 -46055590 + AluSq SINE Alu 1 380 0 540 275 17 0 chr6 143224023 143224143 -46055411 + L2 LINE L2 3190 3311 -2 1746 180 0 34 chr6 143224678 143225001 -46054553 - AluJo SINE Alu 0 312 1 267 257 0 0 chr6 143225439 143225540 -46054014 + GA-rich Low_complexity Low_complexity 1 101 0 586 306 83 39 chr6 143226853 143227216 -46052338 + L2 LINE L2 2934 3312 -1 260 343 35 58 chr6 143227222 143227268 -46052286 + MIR SINE MIR 30 76 -186 1955 149 39 36 chr6 143227268 143227631 -46051923 - THE1B LTR MaLR 0 364 1 260 343 35 58 chr6 143227631 143227756 -46051798 + MIR SINE MIR 76 197 -65 2275 77 14 0 chr6 143228350 143228647 -46050907 + AluY SINE Alu 1 301 -10 2163 125 0 10 chr6 143228661 143228964 -46050590 - AluSx SINE Alu -12 300 1 23 54 0 0 chr6 143229145 143229182 -46050372 + AT_rich Low_complexity Low_complexity 1 37 0 424 267 43 92 chr6 143229504 143229785 -46049769 - MER20B DNA MER1_type -2 781 515 1801 197 31 83 chr6 143229913 143230430 -46049124 + MLT1D LTR MaLR 7 496 -9 255 254 0 0 chr6 143231101 143231160 -46048394 - MER20B DNA MER1_type -287 496 438 362 282 0 0 chr6 143231213 143231298 -46048256 + MER96 DNA MER1_type? 91 175 0 276 269 129 0 chr6 143231320 143231413 -46048141 - MER20B DNA MER1_type -364 419 315 554 300 138 35 chr6 143231419 143231883 -46047671 - L1MDa LINE L1 -3319 3221 2710 545 284 63 11 chr6 143231934 143232202 -46047352 - L1MEc LINE L1 -4353 2043 1762 1328 262 59 35 chr6 143232204 143232461 -46047093 - L1MEc LINE L1 -4738 1658 1409 2421 90 3 0 chr6 143232461 143232772 -46046782 - AluSx SINE Alu 0 312 1 1328 262 59 35 chr6 143232772 143233288 -46046266 - L1MEc LINE L1 -4987 1409 866 803 95 0 0 chr6 143233305 143233410 -46046144 - AluY SINE Alu -14 297 193 2374 255 48 28 chr6 143233411 143234165 -46045389 - L1MEc LINE L1 -5592 804 36 314 306 78 28 chr6 143234173 143234353 -46045201 - L1MDa LINE L1 -3909 2631 2443 352 327 40 20 chr6 143234629 143234831 -46044723 - HAL1 LINE L1 -829 1678 1473 686 276 6 6 chr6 143235054 143235228 -46044326 + MER5B DNA MER1_type 4 177 -1 501 285 14 14 chr6 143235467 143235611 -46043943 + MER5B DNA MER1_type 47 177 -1 234 105 0 0 chr6 143235893 143235931 -46043623 + (CA)n Simple_repeat Simple_repeat 1 38 0 546 292 65 18 chr6 143236158 143236326 -46043228 - MER20B DNA MER1_type -497 286 111 851 188 6 6 chr6 143237213 143237378 -46042176 + FRAM SINE Alu 1 165 -1 1932 136 19 23 chr6 143238647 143238956 -46040598 + AluJb SINE Alu 5 312 0 242 54 0 27 chr6 143239597 143239634 -46039920 + (CA)n Simple_repeat Simple_repeat 1 36 0 575 53 13 0 chr6 143240228 143240304 -46039250 - MADE1 DNA Mariner -1 79 3 2043 152 133 0 chr6 143240552 143240928 -46038626 - MSTB LTR MaLR 0 426 1 1756 219 38 7 chr6 143241215 143241666 -46037888 - MLT1C LTR MaLR -2 465 1 22 56 0 0 chr6 143241907 143241943 -46037611 + AT_rich Low_complexity Low_complexity 1 36 0 274 263 38 0 chr6 143242693 143242773 -46036781 + GA-rich Low_complexity Low_complexity 2 84 0 21 57 0 0 chr6 143243415 143243450 -46036104 + AT_rich Low_complexity Low_complexity 1 35 0 326 127 0 16 chr6 143243574 143243637 -46035917 + (TC)n Simple_repeat Simple_repeat 2 63 0 793 242 28 0 chr6 143244145 143244424 -46035130 - AluJo SINE Alu 0 406 123 21 57 0 0 chr6 143244795 143244830 -46034724 + AT_rich Low_complexity Low_complexity 1 35 0 286 291 77 0 chr6 143244873 143244990 -46034564 + HAL1 LINE L1 16 141 -2366 314 351 59 29 chr6 143245462 143245701 -46033853 - L1ME LINE L1 -558 5563 5318 376 299 75 7 chr6 143245815 143245962 -46033592 - MIR SINE MIR -87 175 19 2422 194 28 95 chr6 143246500 143247217 -46032337 - L1MD1 LINE L1 -2 6634 5966 2101 233 153 28 chr6 143247223 143247860 -46031694 - L1MD1 LINE L1 -1222 5318 4522 2007 80 80 4 chr6 143247860 143248135 -46031419 - AluY SINE Alu -15 296 1 2101 233 153 28 chr6 143248135 143248443 -46031111 - L1MD1 LINE L1 -2018 4522 4254 381 206 19 96 chr6 143248455 143248664 -46030890 - L1MD1 LINE L1 -2929 3611 3419 1989 158 12 9 chr6 143248674 143249009 -46030545 + MER2 DNA MER2_type 10 345 0 3426 222 68 6 chr6 143249017 143250702 -46028852 - L1MD1 LINE L1 -3123 3417 1630 4276 222 48 66 chr6 143250707 143250830 -46028724 + L1ME1 LINE L1 3463 3587 -2559 1100 88 7 0 chr6 143250830 143250978 -46028576 + L1PA11 LINE L1 6025 6173 -1 4276 222 48 66 chr6 143250978 143251294 -46028260 + L1ME1 LINE L1 3587 3907 -2239 686 209 0 0 chr6 143251294 143251409 -46028145 + FLAM_A SINE Alu 2 116 -17 4276 222 48 66 chr6 143251409 143252359 -46027195 + L1ME1 LINE L1 3907 4898 -1248 1975 151 6 20 chr6 143252359 143252703 -46026851 - MER44D DNA MER2_type 0 609 1 4276 222 48 66 chr6 143252703 143253072 -46026482 + L1ME1 LINE L1 4898 5272 -874 2915 168 111 121 chr6 143253126 143253438 -46026116 + L1MC3 LINE L1 6807 7121 -664 254 308 33 0 chr6 143253438 143253529 -46026025 + MLT1F1 LTR MaLR 37 130 -437 2915 168 111 121 chr6 143253529 143254112 -46025442 + L1MC3 LINE L1 7121 7782 -3 2807 241 35 33 chr6 143254108 143254933 -46024621 + L1ME1 LINE L1 5312 6138 -28 * 858 174 0 0 chr6 143255250 143255422 -46024132 + GA-rich Low_complexity Low_complexity 2 173 0 260 169 22 22 chr6 143255529 143255618 -46023936 + GA-rich Low_complexity Low_complexity 3 91 0 377 248 81 7 chr6 143256231 143256486 -46023068 - MER46C DNA MER2_type 0 338 2 622 265 0 0 chr6 143256744 143256876 -46022678 - FLAM_A SINE Alu 0 133 2 25 0 0 0 chr6 143257459 143257484 -46022070 + AT_rich Low_complexity Low_complexity 1 25 0 1678 123 4 4 chr6 143257520 143257756 -46021798 + AluSx SINE Alu 3 238 -74 2381 83 3 3 chr6 143258028 143258330 -46021224 + AluSp SINE Alu 1 302 -11 2934 224 96 78 chr6 143259974 143260899 -46018655 - MER69B DNA AcHobo -1301 1225 273 988 187 9 36 chr6 143260899 143261124 -46018430 - MER20 DNA MER1_type 0 219 1 2934 224 96 78 chr6 143261124 143261343 -46018211 - MER69B DNA AcHobo -2253 273 60 187 259 0 52 chr6 143261862 143261920 -46017634 - MIR SINE MIR -94 168 114 585 330 41 5 chr6 143262357 143262575 -46016979 + MIR SINE MIR 7 232 -30 294 192 192 17 chr6 143262883 143263003 -46016551 + L1ME4a LINE L1 5978 6118 -3 192 387 84 0 chr6 143263156 143263275 -46016279 - MIR3 SINE MIR -21 187 59 2207 89 3 7 chr6 143265767 143266059 -46013495 + AluSg SINE Alu 1 291 -19 216 220 0 17 chr6 143266123 143266182 -46013372 + A-rich Low_complexity Low_complexity 2 59 0 2288 47 0 40 chr6 143266377 143266678 -46012876 - AluY SINE Alu -22 289 1 197 383 52 0 chr6 143266713 143266828 -46012726 - L3 LINE CR1 -202 1375 1255 543 258 33 40 chr6 143266879 143267030 -46012524 + L2 LINE L2 3163 3312 -1 224 26 0 79 chr6 143267321 143267359 -46012195 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1328 187 71 15 chr6 143267362 143267507 -46012047 - AluJb SINE Alu -30 282 147 279 0 0 0 chr6 143267507 143267538 -46012016 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1328 187 71 15 chr6 143267538 143267659 -46011895 - AluJb SINE Alu -165 147 1 209 271 82 35 chr6 143268117 143268202 -46011352 - L2 LINE L2 0 3272 3184 473 265 238 0 chr6 143268738 143268889 -46010665 + MIR SINE MIR 18 204 -58 2265 213 12 41 chr6 143268889 143269406 -46010148 - MLT1D LTR MaLR -2 503 2 303 246 14 0 chr6 143270181 143270250 -46009304 - L1MC4 LINE L1 -1339 6703 6634 393 328 20 53 chr6 143272026 143272270 -46007284 + MIR SINE MIR 27 262 0 2433 87 0 0 chr6 143272453 143272751 -46006803 - AluSc SINE Alu -11 298 1 372 123 0 0 chr6 143272798 143272871 -46006683 + (TA)n Simple_repeat Simple_repeat 1 73 0 835 182 0 0 chr6 143273498 143273657 -46005897 - L1MB3 LINE L1 0 6183 6025 319 304 105 23 chr6 143273657 143273828 -46005726 - L1ME4a LINE L1 -226 5895 5711 369 246 54 54 chr6 143274221 143274351 -46005203 + MIR SINE MIR 62 191 -71 209 179 0 18 chr6 143274984 143275040 -46004514 + (TATG)n Simple_repeat Simple_repeat 2 56 0 28 29 0 0 chr6 143276129 143276164 -46003390 + GC_rich Low_complexity Low_complexity 1 35 0 304 172 35 69 chr6 143279554 143279641 -45999913 + MIR SINE MIR 119 202 -60 300 137 0 0 chr6 143279768 143279819 -45999735 + (TG)n Simple_repeat Simple_repeat 2 52 0 186 384 27 0 chr6 143280085 143280158 -45999396 - L3 LINE CR1 -485 1092 1018 267 133 0 0 chr6 143281174 143281219 -45998335 + (TG)n Simple_repeat Simple_repeat 2 46 0 279 0 0 0 chr6 143282487 143282518 -45997036 + (CA)n Simple_repeat Simple_repeat 2 32 0 463 260 173 13 chr6 143283075 143283225 -45996329 + MER5A DNA MER1_type 16 189 0 2051 148 7 0 chr6 143283376 143283686 -45995868 - AluSx SINE Alu 0 312 1 26 30 0 0 chr6 143284610 143284643 -45994911 + AT_rich Low_complexity Low_complexity 1 33 0 467 233 148 40 chr6 143284949 143285125 -45994429 - MIR SINE MIR -13 249 55 261 190 50 50 chr6 143285164 143285264 -45994290 - MLT1K LTR MaLR -18 570 471 26 30 0 0 chr6 143286048 143286081 -45993473 + AT_rich Low_complexity Low_complexity 1 33 0 217 240 0 0 chr6 143286240 143286290 -45993264 + (TATG)n Simple_repeat Simple_repeat 2 51 0 232 370 58 26 chr6 143287089 143287243 -45992311 + MIR3 SINE MIR 23 181 -27 369 256 11 0 chr6 143287626 143287716 -45991838 - Tigger7 DNA MER2_type 0 2587 2497 1459 199 0 33 chr6 143287727 143287911 -45991643 - Tigger7 DNA MER2_type -466 267 93 2189 102 6 13 chr6 143287911 143288226 -45991328 - AluSq SINE Alu 0 313 1 1459 199 0 33 chr6 143288226 143288317 -45991237 - Tigger7 DNA MER2_type -640 93 1 219 281 94 21 chr6 143288547 143288643 -45990911 - L2 LINE L2 0 3272 3170 471 296 152 13 chr6 143289722 143289952 -45989602 + MIR SINE MIR 1 262 0 1278 155 0 19 chr6 143290206 143290419 -45989135 - AluJo SINE Alu -7 305 97 1611 87 5 0 chr6 143291435 143291642 -45987912 - AluSp SINE Alu -18 295 88 1134 72 0 0 chr6 143291642 143291781 -45987773 + AluSc SINE Alu 156 294 -15 968 196 74 5 chr6 143292976 143293003 -45986551 + AluJo SINE Alu 91 115 -197 387 0 0 0 chr6 143293003 143293046 -45986508 + (CA)n Simple_repeat Simple_repeat 2 44 0 968 196 74 5 chr6 143293046 143293207 -45986347 + AluJo SINE Alu 115 292 -20 191 328 62 31 chr6 143293306 143293434 -45986120 - L2 LINE L2 -14 3299 3168 2098 169 40 24 chr6 143293600 143293646 -45985908 + MER63B DNA MER1_type 9 53 -1009 2210 101 3 3 chr6 143293646 143293943 -45985611 - AluSg SINE Alu -13 297 1 2098 169 40 24 chr6 143293943 143294316 -45985238 + MER63B DNA MER1_type 53 435 -1 243 0 0 0 chr6 143295470 143295497 -45984057 + (TG)n Simple_repeat Simple_repeat 1 27 0 1749 146 8 4 chr6 143295712 143295972 -45983582 + AluSx SINE Alu 1 261 -51 559 147 69 10 chr6 143295972 143296074 -45983480 + AluSg/x SINE Alu 161 268 -44 697 182 18 136 chr6 143296953 143297233 -45982321 - MER112 DNA MER1_type -12 248 2 23 54 0 0 chr6 143298191 143298228 -45981326 + AT_rich Low_complexity Low_complexity 1 37 0 189 74 0 0 chr6 143298823 143298850 -45980704 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 725 169 0 0 chr6 143299442 143299560 -45979994 - FLAM_A SINE Alu -15 118 1 23 0 0 0 chr6 143301924 143301947 -45977607 + AT_rich Low_complexity Low_complexity 1 23 0 971 172 6 0 chr6 143302665 143302828 -45976726 - FAM SINE Alu -4 45 1 240 387 20 20 chr6 143302923 143303073 -45976481 - L2 LINE L2 -98 3174 3025 209 299 52 21 chr6 143303112 143303209 -45976345 + MIR3 SINE MIR 86 185 -23 495 0 0 0 chr6 143303242 143303297 -45976257 + (TG)n Simple_repeat Simple_repeat 2 56 0 2455 61 3 0 chr6 143303313 143303608 -45975946 - AluY SINE Alu -15 296 1 334 264 189 0 chr6 143303779 143303885 -45975669 - L2 LINE L2 0 3313 3188 225 343 81 8 chr6 143304245 143304427 -45975127 - MIR SINE MIR -34 228 2 226 312 59 63 chr6 143304550 143304771 -45974783 - L2 LINE L2 -177 3095 2876 789 278 59 43 chr6 143305716 143305824 -45973730 - MIR SINE MIR -2 260 155 1711 181 67 16 chr6 143305824 143306195 -45973359 + MLT1B LTR MaLR 1 390 0 789 278 59 43 chr6 143306195 143306341 -45973213 - MIR SINE MIR -107 155 2 25 0 0 0 chr6 143307793 143307818 -45971736 + AT_rich Low_complexity Low_complexity 1 25 0 247 284 68 0 chr6 143308355 143308429 -45971125 + MLT1K LTR MaLR 2 80 -508 1840 182 47 32 chr6 143308430 143308975 -45970579 + MLT2A2 LTR ERVL 1 554 0 2212 168 215 7 chr6 143309005 143309587 -45969967 - MER39 LTR ERV1 -4 703 1 368 143 14 0 chr6 143310015 143310085 -45969469 + CT-rich Low_complexity Low_complexity 1 71 0 1396 170 106 3 chr6 143310085 143310367 -45969187 - AluJb SINE Alu -1 311 1 31 26 0 0 chr6 143313438 143313476 -45966078 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr6 143315162 143315188 -45964366 + AT_rich Low_complexity Low_complexity 1 26 0 529 251 104 18 chr6 143316097 143316260 -45963294 + MIR3 SINE MIR 1 177 -31 535 180 47 8 chr6 143320503 143320631 -45958923 - L1MA9 LINE L1 -28 6284 6152 776 275 63 0 chr6 143321589 143321811 -45957743 - MIR SINE MIR -21 241 6 364 275 106 7 chr6 143322566 143322683 -45956871 - L3 LINE CR1 -286 1291 1156 252 0 0 0 chr6 143322683 143322711 -45956843 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 364 275 106 7 chr6 143322711 143322735 -45956819 - L3 LINE CR1 -421 1156 1136 1688 222 74 53 chr6 143323300 143323881 -45955673 + L1MC4 LINE L1 7155 7747 -295 555 290 51 18 chr6 143323881 143324098 -45955456 - MER58A DNA MER1_type 0 224 1 786 230 12 75 chr6 143324098 143324436 -45955118 + L1MC4 LINE L1 7740 8042 0 223 339 0 0 chr6 143324837 143324899 -45954655 + polypyrimidine Low_complexity Low_complexity 4 65 0 198 0 0 0 chr6 143325262 143325284 -45954270 + (T)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr6 143326118 143326139 -45953415 + (A)n Simple_repeat Simple_repeat 1 21 0 1815 173 107 28 chr6 143326809 143327277 -45952277 - MLT1D LTR MaLR 0 505 1 279 0 0 0 chr6 143328426 143328457 -45951097 + (TATTG)n Simple_repeat Simple_repeat 5 35 0 319 279 57 86 chr6 143328732 143328872 -45950682 - L2 LINE L2 0 3313 3178 219 305 0 0 chr6 143328849 143328908 -45950646 - L2 LINE L2 -994 2320 2262 * 510 304 84 8 chr6 143329155 143329392 -45950162 - L2 LINE L2 -1189 2125 1871 1354 165 102 15 chr6 143329606 143329872 -45949682 + AluJb SINE Alu 1 289 -23 25 0 0 0 chr6 143330249 143330274 -45949280 + AT_rich Low_complexity Low_complexity 1 25 0 1092 234 17 4 chr6 143330810 143331041 -45948513 + MER45C DNA AcHobo 9 242 -711 791 229 151 0 chr6 143331107 143331312 -45948242 + MER45C DNA AcHobo 718 953 0 591 53 0 0 chr6 143332213 143332288 -45947266 + (TA)n Simple_repeat Simple_repeat 2 76 0 2282 102 3 13 chr6 143332834 143333147 -45946407 + AluSq SINE Alu 1 310 -3 2234 88 0 11 chr6 143333932 143334263 -45945291 + AluSq SINE Alu 3 330 0 706 218 92 8 chr6 143334382 143334643 -45944911 + MER33 DNA MER1_type 42 324 0 726 203 0 0 chr6 143334761 143334894 -45944660 + FLAM_A SINE Alu 1 133 0 1195 207 136 6 chr6 143334957 143335295 -45944259 + L1MB7 LINE L1 5794 6175 -9 243 0 0 0 chr6 143335630 143335657 -45943897 + (CA)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr6 143335919 143335940 -45943614 + AT_rich Low_complexity Low_complexity 1 21 0 1796 167 10 10 chr6 143336327 143336627 -45942927 - AluJo SINE Alu -12 300 1 2577 119 44 2 chr6 143336714 143337125 -45942429 + MSTA LTR MaLR 1 428 0 251 306 59 0 chr6 143337692 143337777 -45941777 - MIR3 SINE MIR -8 200 111 600 211 40 7 chr6 143338135 143338287 -45941267 - L1MA9 LINE L1 -4 6308 6152 198 197 316 26 chr6 143340606 143340682 -45938872 + L2 LINE L2 3166 3263 -9 226 330 89 18 chr6 143341218 143341330 -45938224 - MIR SINE MIR -114 148 29 21 0 0 0 chr6 143341854 143341875 -45937679 + AT_rich Low_complexity Low_complexity 1 21 0 689 229 175 0 chr6 143342022 143342245 -45937309 + L1MEc LINE L1 1599 1860 -4536 769 174 67 0 chr6 143342245 143342394 -45937160 + L1MB7 LINE L1 6008 6166 -18 1321 144 23 0 chr6 143342571 143342786 -45936768 - MLT1A1 LTR MaLR 0 365 146 364 220 65 65 chr6 143342897 143343065 -45936489 - L1MC5 LINE L1 -804 7157 6990 379 322 33 41 chr6 143343367 143343612 -45935942 - MIR SINE MIR 0 262 20 4667 204 95 28 chr6 143345030 143346358 -45933196 - Charlie1a DNA MER1_type 0 1455 39 1746 153 6 69 chr6 143346742 143347075 -45932479 - AluSx SINE Alu 0 312 1 2251 92 10 16 chr6 143347729 143348034 -45931520 + AluSg SINE Alu 1 303 -7 213 266 47 0 chr6 143348318 143348382 -45931172 - L2 LINE L2 -16 3297 3231 2287 96 3 0 chr6 143348967 143349260 -45930294 + AluSg SINE Alu 1 294 -16 622 282 10 20 chr6 143349367 143349569 -45929985 + MIR SINE MIR 63 262 0 256 312 37 37 chr6 143349797 143349906 -45929648 - L2 LINE L2 -13 3300 3192 209 179 0 18 chr6 143351334 143351390 -45928164 + (TA)n Simple_repeat Simple_repeat 2 56 0 340 121 0 17 chr6 143351395 143351453 -45928101 + MSTA LTR MaLR 372 428 0 281 180 33 0 chr6 143351453 143351514 -45928040 + HAL1 LINE L1 2279 2341 -166 280 56 56 47 chr6 143351585 143351692 -45927862 + (TA)n Simple_repeat Simple_repeat 1 108 0 604 119 101 9 chr6 143351697 143351806 -45927748 - FLAM_C SINE Alu -24 119 1 1789 160 62 56 chr6 143352288 143352737 -45926817 - MER31B LTR ERV1 0 466 15 2212 117 0 0 chr6 143352738 143353038 -45926516 + AluSg SINE Alu 1 300 -10 300 335 7 19 chr6 143353431 143353586 -45925968 + CT-rich Low_complexity Low_complexity 1 153 0 1056 284 89 43 chr6 143355667 143356249 -45923305 + L1MC4a LINE L1 5329 5937 -1871 23 33 0 0 chr6 143356408 143356438 -45923116 + AT_rich Low_complexity Low_complexity 1 30 0 1081 218 21 17 chr6 143356685 143356919 -45922635 + MER8 DNA MER2_type 1 235 -4 24 0 0 0 chr6 143357497 143357521 -45922033 + AT_rich Low_complexity Low_complexity 1 24 0 1147 194 8 21 chr6 143358750 143358992 -45920562 - MER8 DNA MER2_type 0 239 1 1273 169 18 79 chr6 143359330 143359349 -45920205 - L1MB1 LINE L1 -15 6174 6155 808 215 157 89 chr6 143359349 143359866 -45919688 - MER41C LTR ERV1 0 554 3 1273 169 18 79 chr6 143359866 143360125 -45919429 - L1MB1 LINE L1 -34 6155 5913 272 201 213 0 chr6 143360148 143360245 -45919309 + MIR SINE MIR 43 159 -49 28 0 0 0 chr6 143360870 143360898 -45918656 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 143361437 143361458 -45918096 + AT_rich Low_complexity Low_complexity 1 21 0 846 126 0 0 chr6 143361719 143361886 -45917668 + (TTCC)n Simple_repeat Simple_repeat 4 170 0 351 0 0 0 chr6 143361887 143361926 -45917628 + (CCTG)n Simple_repeat Simple_repeat 4 42 0 1089 199 42 19 chr6 143361926 143362142 -45917412 - AluJo SINE Alu -91 221 1 268 313 157 30 chr6 143362247 143362413 -45917141 - MIR SINE MIR -5 257 71 1726 173 0 26 chr6 143363072 143363401 -45916153 + AluJb SINE Alu 1 312 0 2683 129 27 23 chr6 143363422 143363903 -45915651 + L1MA4A LINE L1 5815 6297 -6 233 118 44 59 chr6 143364028 143364096 -45915458 + A-rich Low_complexity Low_complexity 4 70 0 264 30 0 0 chr6 143364115 143364148 -45915406 + (TG)n Simple_repeat Simple_repeat 1 33 0 312 78 62 16 chr6 143364855 143364919 -45914635 + CT-rich Low_complexity Low_complexity 3 69 0 2235 118 3 0 chr6 143365651 143365956 -45913598 + AluSx SINE Alu 1 306 -6 190 394 75 21 chr6 143366350 143366444 -45913110 + L2 LINE L2 3169 3267 -5 182 296 70 14 chr6 143366545 143366616 -45912938 - MIR SINE MIR -70 192 118 386 268 87 7 chr6 143367643 143367781 -45911773 - MIR3 SINE MIR -2 206 58 2096 172 6 3 chr6 143367810 143368170 -45911384 - MER47A DNA MER2_type 0 366 6 199 276 138 35 chr6 143368254 143368370 -45911184 + L2 LINE L2 2936 3063 -250 191 286 191 29 chr6 143368402 143368507 -45911047 + L2 LINE L2 3192 3313 0 2228 90 0 7 chr6 143368778 143369078 -45910476 - AluSc SINE Alu -11 298 1 751 276 73 0 chr6 143369528 143369760 -45909794 + MIR SINE MIR 14 262 0 436 224 116 7 chr6 143370826 143370973 -45908581 - MER103 DNA DNA -2 164 2 196 51 26 51 chr6 143371313 143371326 -45908228 + (GGAAA)n Simple_repeat Simple_repeat 2 14 -25 2179 73 3 44 chr6 143371326 143371512 -45908042 + L1PB1 LINE L1 5848 6017 -134 2275 91 0 3 chr6 143371512 143371809 -45907745 + AluSc SINE Alu 1 296 -13 2179 73 3 44 chr6 143371809 143371939 -45907615 + L1PB1 LINE L1 6017 6151 0 196 51 26 51 chr6 143371939 143371964 -45907590 + (GGAAA)n Simple_repeat Simple_repeat 14 39 0 259 221 29 0 chr6 143372017 143372085 -45907469 + HsTC2 DNA Tc2 13 82 -1816 1687 153 3 44 chr6 143372656 143372950 -45906604 - AluJo SINE Alu -30 282 1 2030 134 3 0 chr6 143373042 143373340 -45906214 - AluSg SINE Alu -11 299 1 252 0 0 0 chr6 143374184 143374212 -45905342 + (T)n Simple_repeat Simple_repeat 1 28 0 256 419 26 19 chr6 143376303 143376458 -45903096 + L2 LINE L2 3112 3267 -5 2441 42 19 19 chr6 143377247 143377558 -45901996 - AluY SINE Alu 0 311 1 1943 149 3 40 chr6 143378223 143378573 -45900981 - MER1B DNA MER1_type 0 337 1 254 258 26 7 chr6 143379816 143379967 -45899587 + (TA)n Simple_repeat Simple_repeat 1 154 0 2404 58 0 23 chr6 143380220 143380529 -45899025 - AluY SINE Alu -9 302 1 21 0 0 0 chr6 143381363 143381384 -45898170 + AT_rich Low_complexity Low_complexity 1 21 0 311 327 137 13 chr6 143381838 143381991 -45897563 + MIR SINE MIR 20 191 -71 27 29 0 0 chr6 143382047 143382081 -45897473 + AT_rich Low_complexity Low_complexity 1 34 0 264 393 9 0 chr6 143383372 143383479 -45896075 + L3 LINE CR1 1450 1557 -20 758 262 0 22 chr6 143384399 143384582 -45894972 + MIR SINE MIR 28 206 -56 209 191 106 0 chr6 143384599 143384646 -45894908 + MIR SINE MIR 176 227 -35 1923 160 0 7 chr6 143385696 143386002 -45893552 + AluJb SINE Alu 1 304 -8 1818 123 138 19 chr6 143386928 143387253 -45892301 - THE1B LTR MaLR 0 364 1 250 317 85 0 chr6 143388238 143388320 -45891234 - L1MC/D LINE L1 -2171 5637 5549 180 0 0 0 chr6 143388484 143388504 -45891050 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2266 76 0 0 chr6 143388507 143388783 -45890771 - AluSx SINE Alu -36 276 1 546 292 65 18 chr6 143439925 143440093 -45839461 + MER20B DNA MER1_type 111 286 -497 234 105 0 0 chr6 143440320 143440358 -45839196 + (TG)n Simple_repeat Simple_repeat 1 38 0 501 285 14 14 chr6 143440640 143440784 -45838770 - MER5B DNA MER1_type -1 177 47 686 276 6 6 chr6 143441023 143441197 -45838357 - MER5B DNA MER1_type -1 177 4 352 327 40 20 chr6 143441420 143441622 -45837932 + HAL1 LINE L1 1473 1678 -829 314 306 78 28 chr6 143441898 143442078 -45837476 + L1MDa LINE L1 2118 2306 -3909 2374 255 48 28 chr6 143442086 143442840 -45836714 + L1MDa LINE L1 36 804 -5592 803 95 0 0 chr6 143442841 143442946 -45836608 + AluY SINE Alu 193 297 -14 1328 262 59 35 chr6 143442963 143443479 -45836075 + L1MDa LINE L1 866 1409 -4987 2421 90 3 0 chr6 143443479 143443790 -45835764 + AluSx SINE Alu 1 312 0 1328 262 59 35 chr6 143443790 143444047 -45835507 + L1MDa LINE L1 1409 1658 -4738 545 284 63 11 chr6 143444049 143444317 -45835237 + L1MDa LINE L1 1762 2043 -4353 554 300 138 35 chr6 143444368 143444832 -45834722 + L1MDa LINE L1 2385 2896 -3319 276 269 129 0 chr6 143444838 143444931 -45834623 + MER20B DNA MER1_type 315 419 -364 362 282 0 0 chr6 143444953 143445038 -45834516 - MER96 DNA MER1_type? 0 175 91 255 254 0 0 chr6 143445091 143445150 -45834404 + MER20B DNA MER1_type 438 496 -287 1801 197 31 83 chr6 143445821 143446338 -45833216 - MLT1D LTR MaLR -9 496 7 424 267 43 92 chr6 143446466 143446747 -45832807 + MER20B DNA MER1_type 515 781 -2 23 54 0 0 chr6 143447069 143447106 -45832448 + AT_rich Low_complexity Low_complexity 1 37 0 2163 125 0 10 chr6 143447287 143447590 -45831964 + AluSx SINE Alu 1 300 -12 2275 77 14 0 chr6 143447604 143447901 -45831653 - AluY SINE Alu -10 301 1 260 343 35 58 chr6 143448495 143448620 -45830934 - MIR SINE MIR -65 197 76 1955 149 39 36 chr6 143448620 143448983 -45830571 + THE1B LTR MaLR 1 364 0 260 343 35 58 chr6 143448983 143449029 -45830525 - MIR SINE MIR -186 76 30 586 306 83 39 chr6 143449035 143449398 -45830156 - L2 LINE L2 -1 3312 2934 267 257 0 0 chr6 143450711 143450812 -45828742 + CT-rich Low_complexity Low_complexity 1 101 0 1746 180 0 34 chr6 143451250 143451573 -45827981 + AluJo SINE Alu 1 312 0 540 275 17 0 chr6 143452108 143452228 -45827326 - L2 LINE L2 -2 3311 3190 280 138 31 15 chr6 143452287 143452352 -45827202 + CT-rich Low_complexity Low_complexity 2 67 0 2301 106 6 0 chr6 143452354 143452665 -45826889 - AluSq SINE Alu 0 313 1 258 309 22 88 chr6 143452766 143452902 -45826652 - MIR SINE MIR -70 192 66 29 0 0 0 chr6 143452959 143452988 -45826566 + AT_rich Low_complexity Low_complexity 1 29 0 31 68 0 0 chr6 143453193 143453252 -45826302 + AT_rich Low_complexity Low_complexity 1 59 0 487 285 108 28 chr6 143454256 143454470 -45825084 - MIR SINE MIR -12 250 20 1983 158 0 3 chr6 143454852 143455150 -45824404 + AluSx SINE Alu 1 297 -15 263 266 184 24 chr6 143455555 143455762 -45823792 - MLT1K LTR MaLR -17 571 332 590 142 159 91 chr6 143456231 143456407 -45823147 + MER5A DNA MER1_type 2 189 0 180 0 0 0 chr6 143457226 143457246 -45822308 + (CA)n Simple_repeat Simple_repeat 1 20 0 390 91 0 0 chr6 143458350 143458405 -45821149 + (TG)n Simple_repeat Simple_repeat 2 56 0 1595 141 86 17 chr6 143459037 143459328 -45820226 - AluJb SINE Alu -1 311 1 204 185 0 0 chr6 143459455 143459509 -45820045 + T-rich Low_complexity Low_complexity 1 54 0 309 356 15 7 chr6 143460654 143460789 -45818765 + MIR3 SINE MIR 41 176 -32 33 56 0 0 chr6 143460829 143460883 -45818671 + AT_rich Low_complexity Low_complexity 1 54 0 249 33 0 0 chr6 143461414 143461444 -45818110 + (TA)n Simple_repeat Simple_repeat 2 31 0 698 110 0 0 chr6 143463848 143463948 -45815606 + HY3 scRNA scRNA 1 100 -1 33 0 0 0 chr6 143464054 143464087 -45815467 + AT_rich Low_complexity Low_complexity 1 33 0 2269 96 0 3 chr6 143464090 143464381 -45815173 - AluSq SINE Alu -23 290 1 715 256 28 103 chr6 143464455 143465146 -45814408 + L1MEc LINE L1 1921 2519 -3696 21089 159 17 11 chr6 143465147 143472799 -45806755 + L1MA1 LINE L1 15 7712 -9 1351 243 65 33 chr6 143472818 143473337 -45806217 + L1MEc LINE L1 2511 3046 -3169 361 229 10 10 chr6 143473557 143473653 -45805901 + L1M4 LINE L1 2209 2304 -3842 1456 227 59 55 chr6 143473665 143474141 -45805413 + L1MC4 LINE L1 7422 7899 -143 599 299 71 0 chr6 143474234 143474458 -45805096 + HAL1 LINE L1 1492 1731 -776 27 29 0 0 chr6 143474629 143474663 -45804891 + AT_rich Low_complexity Low_complexity 1 34 0 180 320 48 54 chr6 143475028 143475175 -45804379 - L2 LINE L2 -1985 1329 1184 706 297 50 17 chr6 143478478 143478717 -45800837 + MIR SINE MIR 2 248 -14 280 242 0 0 chr6 143479096 143479158 -45800396 + (TG)n Simple_repeat Simple_repeat 2 63 0 195 282 64 26 chr6 143479182 143479260 -45800294 - L2 LINE L2 -75 3238 3158 666 274 7 7 chr6 143480916 143481116 -45798438 - MIR SINE MIR -55 207 9 314 304 34 0 chr6 143481149 143481297 -45798257 + CT-rich Low_complexity Low_complexity 2 154 0 1858 124 85 25 chr6 143481540 143481894 -45797660 + THE1C LTR MaLR 1 375 0 947 200 99 42 chr6 143482004 143482336 -45797218 + MLT1B LTR MaLR 1 365 0 625 204 15 0 chr6 143482345 143482482 -45797072 - L1ME3 LINE L1 -24 6138 6000 234 284 0 0 chr6 143483801 143483949 -45795605 + GA-rich Low_complexity Low_complexity 1 148 0 24 32 0 0 chr6 143485229 143485260 -45794294 + AT_rich Low_complexity Low_complexity 1 31 0 373 278 37 31 chr6 143485287 143485449 -45794105 - MLT1I LTR MaLR -4 405 243 524 276 19 6 chr6 143485486 143485642 -45793912 - MLT1I LTR MaLR -251 158 1 237 316 59 26 chr6 143486106 143486258 -45793296 - MLT1K LTR MaLR 0 588 432 298 258 30 83 chr6 143486297 143486391 -45793163 + MIR SINE MIR 112 199 -63 2046 115 14 3 chr6 143486391 143486679 -45792875 - AluSq SINE Alu -21 292 2 298 258 30 83 chr6 143486679 143486716 -45792838 + MIR SINE MIR 199 236 -26 2216 89 3 23 chr6 143487002 143487305 -45792249 - AluSc SINE Alu -10 299 3 792 220 14 38 chr6 143487937 143488146 -45791408 - AluJo SINE Alu -19 293 90 839 154 0 0 chr6 143488253 143488389 -45791165 - L1MB3 LINE L1 -217 6202 6067 719 170 0 37 chr6 143488392 143488527 -45791027 - FLAM_A SINE Alu -2 140 11 3541 186 31 37 chr6 143488527 143488836 -45790718 - L1MB3 LINE L1 -406 6013 5704 1951 113 3 18 chr6 143488836 143489120 -45790434 + AluSg SINE Alu 22 301 -9 3541 186 31 37 chr6 143489120 143489428 -45790126 - L1MB3 LINE L1 -715 5704 5396 631 168 61 0 chr6 143489428 143489559 -45789995 - L1MA9 LINE L1 -5 6307 6169 3541 186 31 37 chr6 143489559 143490332 -45789222 - L1MB3 LINE L1 -1023 5396 4633 239 348 76 0 chr6 143490333 143490425 -45789129 - L2 LINE L2 -15 3298 3200 1826 239 38 74 chr6 143491614 143491902 -45787652 - L1MB3 LINE L1 -2535 3847 3550 2107 141 0 0 chr6 143491902 143492199 -45787355 - AluSx SINE Alu -15 297 1 1826 239 38 74 chr6 143492199 143492659 -45786895 - L1MB3 LINE L1 -2832 3550 3135 464 224 0 28 chr6 143492659 143492766 -45786788 + U13 snRNA snRNA 1 104 0 1826 239 38 74 chr6 143492766 143492917 -45786637 - L1MB3 LINE L1 -3247 3135 2980 650 140 0 0 chr6 143492931 143493031 -45786523 - LTR12 LTR ERV1 0 714 615 262 293 10 0 chr6 143493033 143493132 -45786422 - LTR30 LTR ERV1 -79 643 544 1378 136 56 17 chr6 143493132 143493417 -45786137 - LTR12 LTR ERV1 -422 2016 55 246 213 0 0 chr6 143493422 143493469 -45786085 - LTR30 LTR ERV1 -675 47 1 12692 159 31 45 chr6 143493469 143493911 -45785643 - L1MB3 LINE L1 -3417 2965 2518 1947 134 9 37 chr6 143493911 143494232 -45785322 - AluSx SINE Alu 0 312 1 12692 159 31 45 chr6 143494232 143494258 -45785296 - L1MB3 LINE L1 -3864 2518 2493 2274 100 3 3 chr6 143494258 143494557 -45784997 - AluSq SINE Alu -14 299 1 12692 159 31 45 chr6 143494557 143495417 -45784137 - L1MB3 LINE L1 -3889 2493 1622 1614 195 10 27 chr6 143495417 143495715 -45783839 - AluJo SINE Alu -19 293 1 12692 159 31 45 chr6 143495715 143496780 -45782774 - L1MB3 LINE L1 -4760 1622 627 2741 126 12 2 chr6 143496780 143497208 -45782346 - MER57B LTR ERV1 0 434 3 12692 159 31 45 chr6 143497208 143497794 -45781760 - L1MB3 LINE L1 -5755 627 34 219 69 0 0 chr6 143497819 143497848 -45781706 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1646 163 63 0 chr6 143497850 143498120 -45781434 - AluJb SINE Alu -25 287 1 180 0 0 0 chr6 143498613 143498633 -45780921 + (T)n Simple_repeat Simple_repeat 1 20 0 361 281 84 30 chr6 143500225 143500428 -45779126 + L1 LINE L1 2278 2491 -3655 209 220 20 0 chr6 143500550 143500600 -45778954 + (CATA)n Simple_repeat Simple_repeat 4 54 0 22 35 0 0 chr6 143500656 143500685 -45778869 + AT_rich Low_complexity Low_complexity 1 29 0 1654 99 68 4 chr6 143500776 143501039 -45778515 - L1PA11 LINE L1 0 6174 5895 1184 138 0 5 chr6 143501040 143501236 -45778318 + L1P LINE L1 4862 5056 -1090 2012 132 4 0 chr6 143501545 143501859 -45777695 + AluSx SINE Alu 1 315 0 22 0 0 0 chr6 143501869 143501891 -45777663 + AT_rich Low_complexity Low_complexity 1 22 0 577 195 18 0 chr6 143501893 143502006 -45777548 + AluSg/x SINE Alu 181 295 -14 554 283 79 58 chr6 143502025 143502442 -45777112 + L1ME LINE L1 5393 5818 -303 * 4995 181 12 18 chr6 143502436 143503524 -45776030 + L1 LINE L1 4193 5274 -872 1451 174 4 15 chr6 143503744 143504008 -45775546 + AluJb SINE Alu 38 298 -14 2043 108 22 0 chr6 143504374 143504651 -45774903 + AluSx SINE Alu 16 298 -14 286 214 0 43 chr6 143504799 143504869 -45774685 - MER5B DNA MER1_type -48 130 64 297 0 0 0 chr6 143504882 143504915 -45774639 + (GA)n Simple_repeat Simple_repeat 2 34 0 605 204 86 20 chr6 143505198 143505350 -45774204 - MER5B DNA MER1_type -13 165 4 247 125 0 69 chr6 143505420 143505492 -45774062 + (TTCA)n Simple_repeat Simple_repeat 1 67 0 268 127 36 0 chr6 143505646 143505701 -45773853 + T-rich Low_complexity Low_complexity 4 60 0 234 342 60 0 chr6 143505815 143505932 -45773622 - MIR SINE MIR -87 175 52 2252 58 0 7 chr6 143506351 143506629 -45772925 - AluY SINE Alu -3 308 33 1650 141 4 0 chr6 143506768 143507057 -45772497 + AluSx SINE Alu 43 332 0 377 270 49 76 chr6 143507155 143507340 -45772214 + L2 LINE L2 3128 3307 -6 2185 121 0 10 chr6 143507567 143507880 -45771674 - AluSg SINE Alu 0 310 1 29 28 0 0 chr6 143507920 143507956 -45771598 + AT_rich Low_complexity Low_complexity 1 36 0 2453 72 0 3 chr6 143508292 143508598 -45770956 + AluY SINE Alu 1 305 -6 265 319 21 64 chr6 143511357 143511498 -45768056 + L2 LINE L2 3179 3313 0 225 0 0 0 chr6 143512860 143512885 -45766669 + (TG)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr6 143513166 143513187 -45766367 + AT_rich Low_complexity Low_complexity 1 21 0 756 304 123 34 chr6 143513440 143514108 -45765446 - L2 LINE L2 -673 2641 1915 24 0 0 0 chr6 143514455 143514479 -45765075 + AT_rich Low_complexity Low_complexity 1 24 0 1926 127 0 41 chr6 143515652 143515967 -45763587 + AluJb SINE Alu 1 302 -10 194 358 37 51 chr6 143516504 143516719 -45762835 + L2 LINE L2 2966 3177 -95 213 197 0 0 chr6 143516762 143516828 -45762726 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 288 0 0 0 chr6 143517377 143517409 -45762145 + (T)n Simple_repeat Simple_repeat 1 32 0 2630 29 7 3 chr6 143517901 143518208 -45761346 + AluY SINE Alu 1 308 -3 24 91 0 0 chr6 143519154 143519220 -45760334 + AT_rich Low_complexity Low_complexity 1 66 0 228 324 166 22 chr6 143519518 143519657 -45759897 - MIR SINE MIR -6 256 98 270 56 0 0 chr6 143520267 143520303 -45759251 + (CA)n Simple_repeat Simple_repeat 2 37 0 262 178 28 28 chr6 143520938 143521045 -45758509 + CT-rich Low_complexity Low_complexity 3 109 0 208 295 0 0 chr6 143522373 143522434 -45757120 - MIR SINE MIR -5 257 197 2399 88 0 0 chr6 143522487 143522783 -45756771 + AluY SINE Alu 1 296 -15 772 283 108 9 chr6 143522795 143523251 -45756303 + L1ME4a LINE L1 5618 6118 -3 1033 308 71 27 chr6 143524201 143524678 -45754876 + MLT1D LTR MaLR 1 498 -7 324 295 20 67 chr6 143526078 143526227 -45753327 - MIR3 SINE MIR -5 203 62 531 314 64 26 chr6 143527136 143527380 -45752174 + MIR SINE MIR 14 262 0 25 65 0 0 chr6 143528573 143528619 -45750935 + AT_rich Low_complexity Low_complexity 1 46 0 1873 202 50 12 chr6 143528876 143529292 -45750262 + MSTB1 LTR MaLR 1 432 0 239 239 28 14 chr6 143529482 143529553 -45750001 - LTR33A LTR ERVL 0 523 452 183 80 0 0 chr6 143530075 143530100 -45749454 + (CATATA)n Simple_repeat Simple_repeat 2 26 0 3297 314 70 19 chr6 143530289 143530839 -45748715 - ERVL LTR ERVL -315 5449 4928 1739 142 65 44 chr6 143530839 143531206 -45748348 + THE1C LTR MaLR 1 375 0 3297 314 70 19 chr6 143531206 143532089 -45747465 - ERVL LTR ERVL -836 4928 3943 374 319 129 0 chr6 143532195 143532358 -45747196 - ERVL LTR ERVL -1955 3809 3626 382 250 12 0 chr6 143532526 143532606 -45746948 - ERVL LTR ERVL -2143 3511 3431 1674 187 33 40 chr6 143532631 143532866 -45746688 - L1ME2 LINE L1 -9 6224 5990 423 301 25 15 chr6 143532866 143533065 -45746489 - L1PB1 LINE L1 -227 5924 5724 6828 18 6 1 chr6 143533072 143533870 -45745684 - L1PA3 LINE L1 0 6155 5354 1277 234 63 30 chr6 143533869 143534578 -45744976 - L1ME2 LINE L1 -481 5752 5013 * 210 119 48 0 chr6 143534665 143534707 -45744847 + (CTTAA)n Simple_repeat Simple_repeat 4 47 0 706 223 54 0 chr6 143534707 143534873 -45744681 + L1P LINE L1 2435 2609 -3537 2267 227 90 12 chr6 143534881 143535468 -45744086 - L1ME2 LINE L1 -5431 965 333 468 147 27 0 chr6 143536187 143536262 -45743292 - FRAM SINE Alu -31 145 69 238 179 0 0 chr6 143536302 143536341 -45743213 - Alu SINE Alu -179 123 85 264 197 15 30 chr6 143537523 143537589 -45741965 - L2 LINE L2 -67 3246 3182 23 105 0 0 chr6 143538393 143538479 -45741075 + AT_rich Low_complexity Low_complexity 1 86 0 1264 232 120 60 chr6 143538646 143539145 -45740409 + MLT1D LTR MaLR 1 653 -1 192 275 0 0 chr6 143539238 143539278 -45740276 - MIR SINE MIR -219 43 4 707 125 39 0 chr6 143540391 143540495 -45739059 - MER30B DNA MER1_type -1 229 122 1046 102 12 0 chr6 143540495 143540662 -45738892 + L1PA8A LINE L1 5105 5273 -873 4908 72 3 9 chr6 143540662 143541311 -45738243 + L1PA8A LINE L1 5479 6125 -6 806 76 6 8 chr6 143541312 143541442 -45738112 - MER30B DNA MER1_type -80 110 1 212 286 134 27 chr6 143541491 143541603 -45737951 + MIR SINE MIR 102 225 -37 2165 108 3 7 chr6 143542510 143542806 -45736748 - AluSp SINE Alu -4 309 15 225 224 61 0 chr6 143544864 143544913 -45734641 - L2 LINE L2 0 3313 3262 232 397 17 9 chr6 143544964 143545080 -45734474 - L2 LINE L2 -28 3285 3169 868 299 87 31 chr6 143546612 143547151 -45732403 + MLT1K LTR MaLR 10 578 -10 31 26 0 0 chr6 143548000 143548038 -45731516 + AT_rich Low_complexity Low_complexity 1 38 0 544 244 23 83 chr6 143548038 143548146 -45731408 - L1ME3A LINE L1 -20 6150 6060 2935 6 0 0 chr6 143548146 143548464 -45731090 + AluYb8 SINE Alu 1 318 0 544 244 23 83 chr6 143548464 143548572 -45730982 - L1ME3A LINE L1 -110 6060 5947 2059 159 17 25 chr6 143549499 143549901 -45729653 + L1MA7 LINE L1 5893 6291 0 241 282 0 29 chr6 143550978 143551081 -45728473 + (TA)n Simple_repeat Simple_repeat 1 100 0 2066 102 67 0 chr6 143551160 143551445 -45728109 - AluSx SINE Alu -8 304 1 27 49 0 0 chr6 143553474 143553515 -45726039 + AT_rich Low_complexity Low_complexity 1 41 0 1211 249 12 0 chr6 143556443 143556684 -45722870 + MIR SINE MIR 8 251 -11 246 176 0 0 chr6 143556687 143556738 -45722816 + (TG)n Simple_repeat Simple_repeat 2 52 0 7465 26 9 0 chr6 143557399 143558893 -45720661 + L1PA4 LINE L1 4652 6154 -1 4677 98 62 4 chr6 143560158 143560504 -45719050 - L1PB1 LINE L1 0 6151 5826 458 17 17 0 chr6 143560504 143560563 -45718991 + (CA)n Simple_repeat Simple_repeat 2 61 0 4677 98 62 4 chr6 143560563 143560929 -45718625 - L1PB1 LINE L1 -325 5826 5398 5372 112 8 0 chr6 143560929 143561678 -45717876 - HSMAR1 DNA Mariner -532 755 1 301 390 76 40 chr6 143561817 143562145 -45717409 - L2 LINE L2 -10 3262 2923 1072 291 47 39 chr6 143563041 143563577 -45715977 + MLT1L LTR MaLR 66 605 -10 587 247 35 12 chr6 143563690 143563860 -45715694 - L1MA10 LINE L1 0 6334 6161 775 202 28 53 chr6 143563880 143564127 -45715427 + L1M4c LINE L1 2227 2467 -3917 2765 279 43 26 chr6 143564129 143565942 -45713612 - L1M1 LINE L1 -4150 2956 1 582 262 74 64 chr6 143565999 143566392 -45713162 - MER34 LTR ERV1 -142 400 4 21 0 0 0 chr6 143566619 143566640 -45712914 + AT_rich Low_complexity Low_complexity 1 21 0 994 132 0 0 chr6 143568107 143568251 -45711303 + AluSc SINE Alu 155 298 -11 280 333 13 0 chr6 143568559 143568637 -45710917 - L2 LINE L2 -11 3261 3183 202 350 50 0 chr6 143569022 143569122 -45710432 - L2 LINE L2 -1407 1907 1803 2393 80 0 0 chr6 143569174 143569473 -45710081 + AluSc SINE Alu 1 299 -10 641 49 0 0 chr6 143569487 143569597 -45709957 + L1PA3 LINE L1 6071 6180 0 201 121 0 0 chr6 143571759 143571792 -45707762 + (A)n Simple_repeat Simple_repeat 1 33 0 195 167 0 0 chr6 143571943 143571985 -45707569 + (CAT)n Simple_repeat Simple_repeat 1 42 0 1469 184 6 34 chr6 143572179 143572499 -45707055 - AluJo SINE Alu -1 311 1 259 315 135 34 chr6 143572717 143572895 -45706659 - MLT1J2 LTR MaLR 0 450 255 266 269 29 29 chr6 143572954 143573058 -45706496 - MLT1J2 LTR MaLR -332 118 15 950 167 86 43 chr6 143575961 143576171 -45703383 + MER20 DNA MER1_type 1 219 0 1029 304 84 20 chr6 143576681 143577121 -45702433 + LTR33 LTR ERVL 2 469 -52 1993 113 7 30 chr6 143577324 143577625 -45701929 - AluSx SINE Alu -18 294 1 488 184 11 0 chr6 143578098 143578185 -45701369 + 5S rRNA rRNA 1 88 -33 189 368 79 0 chr6 143578666 143578742 -45700812 - L2 LINE L2 -22 3291 3210 40 37 0 0 chr6 143579415 143579469 -45700085 + AT_rich Low_complexity Low_complexity 1 54 0 3014 221 74 22 chr6 143579617 143580545 -45699009 - L1ME1 LINE L1 -38 6128 5168 365 284 132 53 chr6 143580579 143581007 -45698547 - L1ME3A LINE L1 -208 5962 5503 326 330 64 4 chr6 143581104 143581340 -45698214 - L1ME3A LINE L1 -748 5398 5149 1066 267 119 57 chr6 143581451 143581967 -45697587 + L1MC4 LINE L1 6729 7212 -830 1910 136 79 17 chr6 143581967 143582320 -45697234 + THE1C LTR MaLR 1 375 0 9229 116 46 46 chr6 143582320 143583899 -45695655 + THE1C-int LTR MaLR 1 1580 0 1994 118 92 9 chr6 143583899 143584245 -45695309 + THE1C LTR MaLR 1 375 0 1066 267 119 57 chr6 143584245 143584442 -45695112 + L1MC4 LINE L1 7211 7488 -554 677 172 0 8 chr6 143584612 143584734 -45694820 + FLAM_C SINE Alu 1 121 -12 258 286 63 16 chr6 143584900 143585026 -45694528 + L1MC4 LINE L1 7709 7840 -202 228 347 82 0 chr6 143585031 143585129 -45694425 - L3 LINE CR1 -181 1396 1291 23 33 0 0 chr6 143585166 143585196 -45694358 + AT_rich Low_complexity Low_complexity 1 30 0 204 205 55 39 chr6 143585422 143585430 -45694124 + (TA)n Simple_repeat Simple_repeat 2 8 -122 2266 96 0 0 chr6 143585430 143585721 -45693833 + AluY SINE Alu 1 291 -20 204 205 55 39 chr6 143585721 143585839 -45693715 + (TA)n Simple_repeat Simple_repeat 8 130 0 * 240 192 58 19 chr6 143585778 143585882 -45693672 + (TTATA)n Simple_repeat Simple_repeat 4 111 0 508 155 39 29 chr6 143585884 143585987 -45693567 + FLAM_C SINE Alu 24 127 -16 431 310 112 29 chr6 143586776 143587018 -45692536 + MIR SINE MIR 1 262 0 2592 48 0 0 chr6 143587622 143587933 -45691621 - AluY SINE Alu 0 311 1 4536 175 17 28 chr6 143590126 143591047 -45688507 - L1MB8 LINE L1 -5 6173 5263 29 0 0 0 chr6 143592295 143592324 -45687230 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr6 143592885 143592934 -45686620 + AT_rich Low_complexity Low_complexity 1 49 0 26 0 0 0 chr6 143593044 143593070 -45686484 + AT_rich Low_complexity Low_complexity 1 26 0 335 143 0 0 chr6 143594432 143594481 -45685073 - L1PA16 LINE L1 -82 6084 6036 399 113 75 12 chr6 143594481 143594561 -45684993 + L1PA16 LINE L1 6080 6164 -2 344 326 85 27 chr6 143596210 143596434 -45683120 + MIR SINE MIR 21 257 -5 2221 135 0 0 chr6 143596615 143596927 -45682627 + AluSx SINE Alu 1 312 0 553 363 69 0 chr6 143597951 143598393 -45681161 - L2 LINE L2 -249 3064 2596 232 317 0 30 chr6 143598453 143598554 -45681000 + L1ME LINE L1 2914 3011 -3135 567 287 55 51 chr6 143599001 143599047 -45680507 + Charlie2 DNA MER1_type 32 76 -2706 1438 102 70 0 chr6 143599047 143599262 -45680292 - MER30 DNA MER1_type 0 230 1 567 287 55 51 chr6 143599262 143599508 -45680046 + Charlie2 DNA MER1_type 76 325 -2457 2597 221 72 35 chr6 143599511 143600413 -45679141 + Charlie2 DNA MER1_type 1857 2791 -71 494 285 121 6 chr6 143600584 143600749 -45678805 + MIR SINE MIR 17 200 -62 326 264 27 9 chr6 143601324 143601434 -45678120 + L1ME LINE L1 4501 4612 -1534 252 323 102 44 chr6 143602034 143602260 -45677294 - L3 LINE CR1 -675 902 664 323 178 40 0 chr6 143602579 143602680 -45676874 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 206 258 278 10 chr6 143606198 143606295 -45673259 - MIR SINE MIR -115 147 25 225 351 92 30 chr6 143606824 143606955 -45672599 + L2 LINE L2 3134 3272 0 316 153 14 14 chr6 143607101 143607173 -45672381 + GA-rich Low_complexity Low_complexity 4 75 0 615 105 0 0 chr6 143608336 143608431 -45671123 - L1MB3 LINE L1 -7 6176 6082 652 199 0 29 chr6 143608644 143608780 -45670774 + FLAM_A SINE Alu 1 132 -1 189 21 21 104 chr6 143609020 143609068 -45670486 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 275 288 71 40 chr6 143609771 143610021 -45669533 + L1ME LINE L1 5318 5586 -535 399 226 43 52 chr6 143610031 143610146 -45669408 - L2 LINE L2 0 3313 3200 656 259 44 13 chr6 143610149 143610377 -45669177 + L1ME LINE L1 5586 5820 -301 338 201 90 60 chr6 143610586 143610720 -45668834 + L1ME4a LINE L1 5384 5521 -600 741 246 129 53 chr6 143611367 143611789 -45667765 + L1ME4a LINE L1 5610 6073 -48 1984 122 14 0 chr6 143611789 143612076 -45667478 - AluSx SINE Alu -21 291 1 741 246 129 53 chr6 143612076 143612125 -45667429 + L1ME4a LINE L1 6073 6117 -4 311 327 0 9 chr6 143612372 143612482 -45667072 + MIR SINE MIR 127 235 -27 2063 129 10 0 chr6 143612644 143612939 -45666615 - AluSx SINE Alu -14 298 1 201 39 0 0 chr6 143614856 143614882 -45664672 + (CA)n Simple_repeat Simple_repeat 1 26 0 455 272 96 62 chr6 143615235 143615507 -45664047 + L1MEc LINE L1 2119 2399 -3997 1994 246 53 18 chr6 143616332 143616823 -45662731 + MLT2B3 LTR ERVL 1 508 -46 285 266 14 7 chr6 143616823 143616962 -45662592 + (TA)n Simple_repeat Simple_repeat 1 140 0 359 267 39 58 chr6 143617049 143617334 -45662220 - L1MEc LINE L1 -851 1725 1427 4044 147 44 4 chr6 143617334 143618014 -45661540 - MER39 LTR ERV1 0 707 1 1317 184 57 32 chr6 143618068 143618383 -45661171 - MER44D DNA MER2_type 0 609 17 1686 194 10 3 chr6 143618677 143618986 -45660568 - AluJb SINE Alu -1 311 1 203 137 0 39 chr6 143619201 143619252 -45660302 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 1986 94 0 18 chr6 143619417 143619693 -45659861 - AluY SINE Alu 0 311 41 1447 209 50 82 chr6 143620172 143620505 -45659049 - MER39 LTR ERV1 0 707 392 2684 146 27 5 chr6 143620505 143620943 -45658611 + MER83 LTR ERV1 1 448 0 1447 209 50 82 chr6 143620943 143621072 -45658482 - MER39 LTR ERV1 -315 392 260 235 264 35 46 chr6 143621058 143621145 -45658409 - LTR48B LTR ERV1 -555 89 4 * 966 366 20 5 chr6 143621373 143621772 -45657782 + LTR16C LTR ERVL 87 491 0 2795 163 198 47 chr6 143621938 143622656 -45656898 + LTR1B LTR ERV1 1 826 0 39 88 0 0 chr6 143623053 143623155 -45656399 + AT_rich Low_complexity Low_complexity 1 102 0 2213 126 15 9 chr6 143623863 143624204 -45655350 - MER61A LTR ERV1 0 343 1 640 192 20 26 chr6 143624379 143624530 -45655024 - MER31A LTR ERV1 0 485 336 27 29 0 0 chr6 143624546 143624580 -45654974 + AT_rich Low_complexity Low_complexity 1 34 0 228 270 32 0 chr6 143625492 143625555 -45653999 + L2 LINE L2 2230 2294 -1020 1239 76 43 9 chr6 143625567 143625778 -45653776 - LTR7 LTR ERV1 -2 448 231 2152 175 22 0 chr6 143625975 143626375 -45653179 + L1MA5A LINE L1 5886 6294 -3 546 99 12 0 chr6 143626391 143626472 -45653082 - HY3 scRNA scRNA -19 82 1 601 300 43 55 chr6 143626515 143626768 -45652786 + L1PA13 LINE L1 515 764 -6023 287 351 90 15 chr6 143626816 143626950 -45652604 + L1PA13 LINE L1 738 881 -5906 5096 223 18 11 chr6 143627011 143628168 -45651386 + L1PA13 LINE L1 1180 2278 -4509 332 326 0 0 chr6 143628265 143628443 -45651111 + T-rich Low_complexity Low_complexity 1 178 0 523 111 0 12 chr6 143629034 143629115 -45650439 + MADE1 DNA Mariner 1 80 0 23 54 0 0 chr6 143629282 143629319 -45650235 + AT_rich Low_complexity Low_complexity 1 37 0 503 332 98 25 chr6 143629903 143630391 -45649163 + L2 LINE L2 590 1113 -2201 343 314 57 54 chr6 143630396 143630803 -45648751 - LTR67 LTR ERVL 0 557 150 10254 155 10 44 chr6 143630999 143632928 -45646626 - L1P LINE L1 -4272 1874 11 239 276 26 0 chr6 143633152 143633228 -45646326 + L1M4 LINE L1 2932 3009 -3137 417 282 23 40 chr6 143633255 143633429 -45646125 + LTR67 LTR ERVL 314 484 -73 409 201 215 23 chr6 143633447 143633661 -45645893 - L1MC5 LINE L1 -61 7900 7646 2087 43 0 99 chr6 143633802 143634124 -45645430 - LTR7 LTR ERV1 -160 290 1 1228 280 45 39 chr6 143634129 143634618 -45644936 + L2 LINE L2 2346 2837 -477 354 367 56 15 chr6 143634900 143635169 -45644385 + L1M4b LINE L1 1318 1770 -5325 616 254 35 77 chr6 143635293 143635596 -45643958 + L1M4b LINE L1 1976 2247 -4891 4231 133 13 12 chr6 143635596 143636283 -45643271 + L1PA15 LINE L1 5471 6158 -7 616 254 35 77 chr6 143636283 143636527 -45643027 + L1M4b LINE L1 2247 2500 -4638 1081 127 7 0 chr6 143636957 143637107 -45642447 + AluSq/x SINE Alu 1 151 -162 182 204 111 0 chr6 143638607 143638661 -45640893 + MER5C DNA MER1_type 86 145 -179 281 200 67 27 chr6 143639289 143639364 -45640190 - REP3 LTR ERV -291 271 194 614 256 52 6 chr6 143639382 143639791 -45639763 - L1 LINE L1 -1622 4524 3965 249 271 30 34 chr6 143639808 143640070 -45639484 - L1ME LINE L1 -5178 941 681 2560 187 4 11 chr6 143640628 143641099 -45638455 + Tigger3b DNA MER2_type 1 468 -763 328 310 7 19 chr6 143641216 143641371 -45638183 + C-rich Low_complexity Low_complexity 5 157 0 1518 135 7 169 chr6 143641471 143641886 -45637668 + Tigger3b DNA MER2_type 884 1231 0 23 0 0 0 chr6 143641892 143641915 -45637639 + AT_rich Low_complexity Low_complexity 1 23 0 343 296 42 85 chr6 143642095 143642402 -45637152 - L1ME LINE L1 -5823 296 3 301 26 51 0 chr6 143642792 143642831 -45636723 - L1P2 LINE L1 -484 5670 5630 1792 53 0 0 chr6 143642831 143643051 -45636503 + L1PA4 LINE L1 5925 6152 -3 629 131 167 54 chr6 143643138 143643306 -45636248 + MER53 DNA DNA 3 189 0 2221 95 0 3 chr6 143644797 143645107 -45634447 + AluSx SINE Alu 1 309 0 458 254 33 16 chr6 143646045 143646167 -45633387 - L2 LINE L2 0 3313 3190 235 152 0 0 chr6 143646228 143646274 -45633280 + LTR66 LTR ERVL 394 439 -171 270 206 0 0 chr6 143646284 143646352 -45633202 + (TA)n Simple_repeat Simple_repeat 2 69 0 625 333 92 0 chr6 143646363 143646767 -45632787 - L2 LINE L2 -163 3150 2698 1797 195 27 3 chr6 143646781 143647115 -45632439 + L1M1 LINE L1 786 1127 -6439 810 253 116 32 chr6 143647814 143648011 -45631543 - L1ME LINE L1 -346 5818 5639 2804 120 13 22 chr6 143648011 143648460 -45631094 - MER65A LTR ERV1 0 445 1 810 253 116 32 chr6 143648460 143648633 -45630921 - L1ME LINE L1 -525 5639 5417 7898 75 5 5 chr6 143648642 143650502 -45629052 - L1PA7 LINE L1 -5 6149 4290 5759 95 33 0 chr6 143650502 143651300 -45628254 + L1PA6 LINE L1 746 1569 -4892 22201 71 16 4 chr6 143651400 143654466 -45625088 + L1PA6 LINE L1 2203 5283 -1178 6920 65 8 0 chr6 143654482 143655702 -45623852 + L1PA6 LINE L1 5240 6466 -3 628 280 7 0 chr6 143655954 143656104 -45623450 - MLT1B LTR MaLR -76 314 164 240 211 35 35 chr6 143656147 143656204 -45623350 + L1M4b LINE L1 360 416 -6443 234 0 0 0 chr6 143656340 143656366 -45623188 + (A)n Simple_repeat Simple_repeat 1 26 0 376 269 47 4 chr6 143656366 143656599 -45622955 + L1M1 LINE L1 2824 3077 -849 226 223 104 57 chr6 143657038 143657249 -45622305 + L1M1 LINE L1 3551 3771 -3794 279 271 10 0 chr6 143657719 143657815 -45621739 + L1M1 LINE L1 5081 5177 -2388 25 75 0 0 chr6 143657815 143657868 -45621686 + AT_rich Low_complexity Low_complexity 1 53 0 13289 219 36 21 chr6 143658149 143658299 -45621255 + L1PA6 LINE L1 1976 2122 -4032 2259 108 47 36 chr6 143658299 143658659 -45620895 - THE1B LTR MaLR 0 364 1 13289 219 36 21 chr6 143658659 143660127 -45619427 + L1PA6 LINE L1 2122 3566 -2588 2039 143 3 0 chr6 143660127 143660434 -45619120 + AluSx SINE Alu 1 308 -4 13289 219 36 21 chr6 143660434 143661480 -45618074 + L1PA6 LINE L1 3566 4595 -1559 2643 127 0 5 chr6 143661480 143661857 -45617697 - THE1C LTR MaLR 0 375 1 9481 124 15 58 chr6 143661857 143663508 -45616046 - THE1C-int LTR MaLR 0 1580 1 2129 144 14 11 chr6 143663510 143663871 -45615683 - THE1B LTR MaLR -2 362 1 13289 219 36 21 chr6 143663871 143663889 -45615665 + L1PA6 LINE L1 4595 4611 -1543 2306 77 3 3 chr6 143663889 143664189 -45615365 + AluY SINE Alu 1 300 -11 13289 219 36 21 chr6 143664189 143664248 -45615306 + L1PA6 LINE L1 4611 4668 -1486 2349 168 26 0 chr6 143664248 143664665 -45614889 - MSTA LTR MaLR 0 428 1 13289 219 36 21 chr6 143664665 143665825 -45613729 + L1PA6 LINE L1 4668 5938 -216 538 198 0 0 chr6 143665940 143666036 -45613518 + MER34 LTR ERV1 1 96 -446 * 796 246 112 61 chr6 143666010 143666222 -45613332 + LTR48B LTR ERV1 117 317 -327 1749 179 7 0 chr6 143666222 143666523 -45613031 - AluJb SINE Alu -9 303 1 796 246 112 61 chr6 143666523 143666544 -45613010 + LTR48B LTR ERV1 317 335 -309 2285 165 36 5 chr6 143666544 143666957 -45612597 - MSTB LTR MaLR 0 426 1 796 246 112 61 chr6 143666957 143667178 -45612376 + LTR48B LTR ERV1 335 595 -49 363 267 0 9 chr6 143667298 143667403 -45612151 - L1M4 LINE L1 -1058 5088 4985 812 111 8 0 chr6 143667404 143667521 -45612033 - AluSg/x SINE Alu -18 294 177 3591 266 40 40 chr6 143667562 143669157 -45610397 - L1M4 LINE L1 -1179 4967 3372 5657 166 15 54 chr6 143669229 143670430 -45609124 + L1M1 LINE L1 5293 6446 -1119 1421 118 0 5 chr6 143670439 143670642 -45608912 + AluSx SINE Alu 10 211 -101 1024 150 0 6 chr6 143670644 143670804 -45608750 + AluSg/x SINE Alu 134 292 -18 6182 92 12 7 chr6 143670807 143671941 -45607613 + L1PA13 LINE L1 5024 6161 -2 226 325 48 12 chr6 143672247 143672330 -45607224 - L2 LINE L2 0 3272 3187 399 274 57 9 chr6 143673257 143673439 -45606115 - L1MD2 LINE L1 0 7807 6240 * 3529 259 72 8 chr6 143673395 143674072 -45605482 + L1MD2 LINE L1 3362 4146 -2000 2507 159 21 5 chr6 143674072 143674493 -45605061 + MSTC LTR MaLR 1 428 0 3529 259 72 8 chr6 143674493 143674989 -45604565 + L1MD2 LINE L1 4146 4609 -1537 1979 226 52 35 chr6 143675101 143675961 -45603593 + L1MD2 LINE L1 4971 5833 -409 357 241 19 19 chr6 143676061 143676169 -45603385 + L1MD2 LINE L1 5826 5933 -426 * 1146 235 80 76 chr6 143676160 143676672 -45602882 - L1MEc LINE L1 -3383 2832 2349 1726 133 66 16 chr6 143676672 143676989 -45602565 + L1MA8 LINE L1 5955 6287 -4 1146 235 80 76 chr6 143676989 143677275 -45602279 - L1MEc LINE L1 -3866 2349 2066 266 292 28 0 chr6 143677307 143677379 -45602175 - MER58C DNA MER1_type -15 200 127 245 276 0 13 chr6 143677422 143677498 -45602056 - MER58C DNA MER1_type -90 125 51 1474 278 61 70 chr6 143677572 143678600 -45600954 - L1MEc LINE L1 -4352 2044 1026 204 200 0 0 chr6 143678615 143678660 -45600894 + (TATATG)n Simple_repeat Simple_repeat 1 45 0 249 251 35 23 chr6 143678692 143678863 -45600691 + (TA)n Simple_repeat Simple_repeat 1 173 0 2805 276 45 11 chr6 143678903 143679825 -45599729 - L1MEc LINE L1 -5409 987 35 298 366 58 47 chr6 143679826 143680005 -45599549 + L2 LINE L2 2590 2766 -506 219 36 0 0 chr6 143680005 143680033 -45599521 + (CA)n Simple_repeat Simple_repeat 1 28 0 298 366 58 47 chr6 143680033 143680273 -45599281 + L2 LINE L2 2766 3011 -261 373 289 62 38 chr6 143681781 143681992 -45597562 - L1ME1 LINE L1 -257 5909 5694 367 265 148 16 chr6 143682263 143682452 -45597102 + Charlie8 DNA MER1_type 29 242 -2175 321 321 107 0 chr6 143682571 143682702 -45596852 - MLT1L LTR MaLR -208 407 263 890 217 139 22 chr6 143682743 143683069 -45596485 - MSTD LTR MaLR 0 396 1 256 296 31 41 chr6 143684975 143685073 -45594481 - L2 LINE L2 -1 3312 3216 225 368 191 20 chr6 143685236 143685388 -45594166 + MIR3 SINE MIR 16 193 -15 28 29 0 0 chr6 143685769 143685804 -45593750 + AT_rich Low_complexity Low_complexity 1 35 0 791 159 24 12 chr6 143685804 143685974 -45593580 - L1PB2 LINE L1 -1 6150 5979 10542 215 55 5 chr6 143686118 143689492 -45590062 - L1PB2 LINE L1 -75 6076 2530 325 275 8 17 chr6 143689543 143689663 -45589891 - L1MC5 LINE L1 -26 7935 7817 277 372 7 7 chr6 143689831 143689968 -45589586 - MERVL LTR ERVL -1968 3517 3381 930 232 109 50 chr6 143690296 143690731 -45588823 - MLT1C LTR MaLR 0 467 1 253 304 92 75 chr6 143690918 143691491 -45588063 - HAL1b LINE L1 -711 637 55 297 0 0 0 chr6 143691543 143691576 -45587978 + (TG)n Simple_repeat Simple_repeat 2 34 0 711 196 133 15 chr6 143692596 143692776 -45586778 - MLT1C LTR MaLR -2 465 286 31 44 0 0 chr6 143692828 143692873 -45586681 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr6 143693375 143693401 -45586153 + AT_rich Low_complexity Low_complexity 1 26 0 2202 97 7 3 chr6 143693410 143693699 -45585855 - AluY SINE Alu -21 290 1 504 335 37 5 chr6 143693778 143693969 -45585585 - MIR SINE MIR -64 198 2 2575 200 36 36 chr6 143694431 143694510 -45585044 + MLT2B3 LTR ERVL 1 79 -475 2148 150 21 16 chr6 143694510 143694883 -45584671 - THE1C LTR MaLR 0 375 1 2575 200 36 36 chr6 143694883 143695357 -45584197 + MLT2B3 LTR ERVL 78 554 0 22 35 0 0 chr6 143695757 143695786 -45583768 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr6 143695950 143695978 -45583576 + AT_rich Low_complexity Low_complexity 1 28 0 2220 89 0 13 chr6 143696009 143696311 -45583243 - AluSx SINE Alu -14 298 1 517 359 51 25 chr6 143696343 143696736 -45582818 + L1ME LINE L1 2 404 -5666 484 191 11 0 chr6 143696893 143696982 -45582572 + MLT1C LTR MaLR 378 467 0 837 272 72 27 chr6 143696985 143697386 -45582168 + L1M4 LINE L1 3750 4168 -1978 4566 156 54 52 chr6 143697395 143698433 -45581121 + L1MC1 LINE L1 5186 6222 -111 411 113 28 0 chr6 143698435 143698506 -45581048 + L1MC1 LINE L1 6261 6333 0 332 201 7 162 chr6 143698517 143698671 -45580883 + L1M4 LINE L1 4163 4292 -1854 826 285 24 42 chr6 143698673 143699056 -45580498 + L1M4 LINE L1 3586 3961 -2185 1303 202 47 24 chr6 143699059 143699356 -45580198 + AluJb SINE Alu 1 304 -8 1806 211 30 13 chr6 143699390 143699831 -45579723 - MLT2D LTR ERVL 0 554 2 1961 258 48 8 chr6 143699832 143700421 -45579133 + L1M4 LINE L1 3976 4587 -1559 560 237 0 30 chr6 143700428 143700559 -45578995 + MER58B DNA MER1_type 206 332 -9 249 247 258 0 chr6 143700715 143700808 -45578746 + L2 LINE L2 3197 3313 0 24 32 0 0 chr6 143701130 143701161 -45578393 + AT_rich Low_complexity Low_complexity 1 31 0 322 300 60 0 chr6 143703064 143703164 -45576390 + L2 LINE L2 3166 3271 -1 189 226 38 19 chr6 143703890 143703943 -45575611 + MIR SINE MIR 203 256 -6 23 0 0 0 chr6 143804433 143804456 -45475098 + AT_rich Low_complexity Low_complexity 1 23 0 261 262 172 69 chr6 143806729 143806874 -45472680 - MIR SINE MIR -32 230 71 347 179 26 0 chr6 143807682 143807760 -45471794 + MER116 DNA Mariner 1 80 0 272 262 0 0 chr6 143808740 143808801 -45470753 - L2 LINE L2 -9 3304 3244 189 0 0 0 chr6 143809126 143809147 -45470407 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 400 293 115 11 chr6 143811856 143812030 -45467524 + MIR SINE MIR 14 205 -57 23 33 0 0 chr6 143812746 143812776 -45466778 + AT_rich Low_complexity Low_complexity 1 30 0 846 304 46 0 chr6 143813849 143814089 -45465465 - MIR SINE MIR -1 261 11 300 265 24 45 chr6 143815472 143815617 -45463937 - L1ME LINE L1 -346 5818 5675 2404 62 0 3 chr6 143815686 143815702 -45463852 - AluY SINE Alu -8 303 288 186 71 0 0 chr6 143815702 143815730 -45463824 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 2404 62 0 3 chr6 143815730 143816017 -45463537 - AluY SINE Alu -23 288 1 25 31 0 0 chr6 143816642 143816674 -45462880 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr6 143817952 143817994 -45461560 + AT_rich Low_complexity Low_complexity 1 42 0 445 182 61 0 chr6 143818929 143819028 -45460526 + MIR SINE MIR 39 143 -119 3535 184 8 63 chr6 143819111 143819189 -45460365 + L1MA10 LINE L1 5543 5624 -710 2069 123 0 13 chr6 143819189 143819490 -45460064 + AluSx SINE Alu 1 297 -15 3535 184 8 63 chr6 143819490 143820232 -45459322 + L1MA10 LINE L1 5624 6318 -16 1863 265 17 10 chr6 143820385 143820868 -45458686 + LTR40a LTR ERVL 30 515 -4 531 185 76 38 chr6 143820882 143821039 -45458515 - L1MB7 LINE L1 -31 6153 5991 1632 265 58 54 chr6 143821053 143821661 -45457893 - L2 LINE L2 -623 2691 2082 1064 173 14 0 chr6 143821890 143822110 -45457444 + L1MA7 LINE L1 6069 6291 0 25 0 0 0 chr6 143822180 143822205 -45457349 + AT_rich Low_complexity Low_complexity 1 25 0 1435 200 46 0 chr6 143822969 143823254 -45456300 + AluJb SINE Alu 3 300 -12 4756 179 70 10 chr6 143823322 143824949 -45454605 - L1MA7 LINE L1 -204 6087 4373 303 298 58 0 chr6 143825412 143825516 -45454038 + MARNA DNA Mariner 438 547 -39 2755 7 0 0 chr6 143825812 143826113 -45453441 + AluYa5 SINE Alu 1 301 -10 2520 48 0 0 chr6 143828338 143828630 -45450924 - AluY SINE Alu -14 297 6 931 259 49 8 chr6 143828911 143829154 -45450400 - MIR SINE MIR 0 262 10 202 205 0 0 chr6 143829167 143829206 -45450348 + (CA)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chr6 143829347 143829371 -45450183 + AT_rich Low_complexity Low_complexity 1 24 0 217 118 39 0 chr6 143830013 143830064 -45449490 + (CA)n Simple_repeat Simple_repeat 2 54 0 1678 133 78 63 chr6 143830653 143830985 -45448569 - MER1B DNA MER1_type 0 337 1 243 292 42 0 chr6 143831447 143831519 -45448035 + L3 LINE CR1 1406 1480 -97 226 50 50 0 chr6 143832673 143832713 -45446841 + (GA)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr6 143833679 143833700 -45445854 + AT_rich Low_complexity Low_complexity 1 21 0 313 291 112 15 chr6 143833932 143834066 -45445488 - L2 LINE L2 -5 3308 3162 1018 278 88 6 chr6 143834970 143835290 -45444264 - L2 LINE L2 -1114 2200 1855 1781 180 34 0 chr6 143835454 143835776 -45443778 - MER2 DNA MER2_type 0 345 13 276 137 0 0 chr6 143838018 143838069 -45441485 + (TG)n Simple_repeat Simple_repeat 2 52 0 1129 264 31 59 chr6 143838191 143838362 -45441192 - L1MC4a LINE L1 -1958 5850 5676 1483 182 22 33 chr6 143838362 143838730 -45440824 - MLT1A1 LTR MaLR 0 365 2 1129 264 31 59 chr6 143838730 143839169 -45440385 - L1MC4a LINE L1 -2132 5676 5257 189 0 0 0 chr6 143840382 143840403 -45439151 + (TTA)n Simple_repeat Simple_repeat 2 22 0 353 335 20 13 chr6 143840413 143840565 -45438989 + MIR SINE MIR 40 192 -70 348 286 229 0 chr6 143840697 143840837 -45438717 - MER5A DNA MER1_type 0 189 18 23 68 0 0 chr6 143842416 143842460 -45437094 + AT_rich Low_complexity Low_complexity 1 44 0 666 157 9 0 chr6 143844100 143844215 -45435339 - L1PA10 LINE L1 -1 6167 6052 270 210 161 0 chr6 143844238 143844319 -45435235 - HAL1 LINE L1 -2385 122 29 * 1714 132 18 4 chr6 143844305 143844610 -45434944 + L1PA8 LINE L1 5771 6078 -96 1874 162 49 0 chr6 143845853 143846180 -45433374 - MER2 DNA MER2_type -1 343 1 658 167 0 72 chr6 143847574 143847689 -45431865 + FLAM_A SINE Alu 1 106 -205 1775 149 83 9 chr6 143847689 143848038 -45431516 - THE1C LTR MaLR 0 375 1 658 167 0 72 chr6 143848038 143848060 -45431494 + FLAM_A SINE Alu 106 128 -183 504 255 99 110 chr6 143848237 143848672 -45430882 + L1MC/D LINE L1 5255 5684 -2124 246 159 0 130 chr6 143848717 143848786 -45430768 - MIR SINE MIR -7 255 196 203 152 0 0 chr6 143849138 143849171 -45430383 + (CA)n Simple_repeat Simple_repeat 1 33 0 365 362 29 14 chr6 143849400 143849610 -45429944 - MIR SINE MIR -38 224 12 496 308 71 29 chr6 143849698 143849938 -45429616 + MIR SINE MIR 13 262 0 286 171 143 14 chr6 143850096 143850166 -45429388 - MER116 DNA Mariner -1 79 1 2143 96 3 10 chr6 143850301 143850593 -45428961 + AluSg SINE Alu 1 290 -20 2151 239 46 18 chr6 143851026 143851637 -45427917 - L1ME2 LINE L1 -114 6033 5406 263 174 0 0 chr6 143851648 143851694 -45427860 - L1ME2 LINE L1 -784 5363 5318 586 222 93 49 chr6 143851725 143852090 -45427464 - L1ME2 LINE L1 -1124 5005 4577 1384 119 34 75 chr6 143852106 143852401 -45427153 + L1MA8 LINE L1 5987 6269 -22 433 264 151 12 chr6 143852438 143852696 -45426858 - L1ME2 LINE L1 -1578 4551 4258 3019 285 98 9 chr6 143855681 143857135 -45422419 - L1ME2 LINE L1 -1854 4275 2693 732 255 95 37 chr6 143857142 143857691 -45421863 - L1ME2 LINE L1 -3594 2535 1998 4347 111 55 1 chr6 143857706 143858380 -45421174 - L1PA15 LINE L1 -13 6152 5443 744 278 91 41 chr6 143858416 143858901 -45420653 - L1ME2 LINE L1 -4451 1859 1351 541 240 9 95 chr6 143858930 143859151 -45420403 + MER58C DNA MER1_type 12 213 -2 295 270 78 0 chr6 143859163 143859278 -45420276 - L1ME2 LINE L1 -4846 1283 1160 1731 173 3 0 chr6 143859521 143859834 -45419720 + AluSx SINE Alu 1 314 0 700 261 61 19 chr6 143859930 143860240 -45419314 - L1ME2 LINE L1 -5112 1007 685 660 165 43 0 chr6 143860247 143860362 -45419192 - Tigger7 DNA MER2_type 0 2587 2468 * 1490 194 8 11 chr6 143860343 143860611 -45418943 - Tigger7 DNA MER2_type -2220 267 1 236 299 0 41 chr6 143861467 143861564 -45417990 + L1MC5 LINE L1 7808 7900 -61 253 288 58 39 chr6 143862957 143863162 -45416392 - L1ME4a LINE L1 -207 5914 5706 42491 33 22 3 chr6 143863330 143869368 -45410186 - L1PA2 LINE L1 0 6155 1 25 0 0 0 chr6 143870529 143870554 -45409000 + AT_rich Low_complexity Low_complexity 1 25 0 267 31 0 0 chr6 143870654 143870686 -45408868 + (TG)n Simple_repeat Simple_repeat 2 33 0 273 57 0 0 chr6 143870992 143871027 -45408527 + (CCTA)n Simple_repeat Simple_repeat 1 35 0 281 309 0 0 chr6 143871041 143871122 -45408432 - L1ME2 LINE L1 -6035 84 4 228 306 72 38 chr6 143871181 143871390 -45408164 - L1 LINE L1 -2192 3954 3739 627 286 5 38 chr6 143871418 143871603 -45407951 + MIR SINE MIR 63 241 -21 1978 81 0 0 chr6 143871760 143872021 -45407533 + L1PA7 LINE L1 5892 6152 -2 357 255 105 92 chr6 143872070 143872470 -45407084 - L1 LINE L1 -2946 3200 2796 22 56 0 0 chr6 143872783 143872819 -45406735 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr6 143874858 143874880 -45404674 + AT_rich Low_complexity Low_complexity 1 22 0 424 267 84 82 chr6 143876854 143877319 -45402235 + L1MC/D LINE L1 58 523 -5596 438 277 92 43 chr6 143877687 143877969 -45401585 + L1MC/D LINE L1 895 1190 -4929 330 321 56 12 chr6 143878181 143878343 -45401211 + L1MC/D LINE L1 4250 4418 -1711 266 354 8 0 chr6 143878466 143878593 -45400961 + L1MC/D LINE L1 5532 5659 -2132 27 0 0 0 chr6 143878839 143878866 -45400688 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr6 143878994 143879016 -45400538 + AT_rich Low_complexity Low_complexity 1 22 0 196 216 78 0 chr6 143879641 143879692 -45399862 + L2 LINE L2 2779 2833 -481 1235 221 121 60 chr6 143880579 143881013 -45398541 + MER31B LTR ERV1 7 661 0 445 225 107 43 chr6 143881692 143881879 -45397675 + MER106A DNA MER1_type 30 228 -8 23 0 0 0 chr6 143882322 143882345 -45397209 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr6 143882375 143882420 -45397134 + AT_rich Low_complexity Low_complexity 1 45 0 189 0 0 0 chr6 143882657 143882678 -45396876 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1468 157 0 0 chr6 143883809 143884045 -45395509 - MER46A DNA MER2_type 0 236 1 201 320 17 128 chr6 143884169 143884341 -45395213 + L2 LINE L2 3002 3154 -118 307 244 102 91 chr6 143887204 143887401 -45392153 - L2 LINE L2 -426 2888 2690 5504 113 23 9 chr6 143893030 143893890 -45385664 + MER4D LTR ERV1 1 872 0 449 363 31 18 chr6 143894155 143894378 -45385176 + L3 LINE CR1 825 1050 -527 41 0 0 0 chr6 143894393 143894434 -45385120 + AT_rich Low_complexity Low_complexity 1 41 0 1549 285 78 46 chr6 143894651 143895923 -45383631 + L1MC4a LINE L1 3115 4427 -1719 1950 131 7 0 chr6 143895970 143896252 -45383302 + AluSx SINE Alu 5 288 -24 288 261 0 22 chr6 143896285 143896377 -45383177 + L1MC4 LINE L1 6614 6703 -1339 242 300 0 22 chr6 143896377 143896467 -45383087 + L1MC4 LINE L1 6616 6703 -1339 248 212 0 101 chr6 143896477 143896576 -45382978 - L1MC4 LINE L1 -1339 6703 6615 290 233 47 0 chr6 143896611 143896697 -45382857 - L1MC4 LINE L1 -1339 6703 6614 374 205 0 26 chr6 143896744 143896822 -45382732 + MLT1A1 LTR MaLR 72 147 -218 355 329 44 24 chr6 143896847 143897096 -45382458 + L1MC4a LINE L1 4738 4991 -1155 2089 268 82 35 chr6 143897164 143897988 -45381566 + L1MEc LINE L1 246 1108 -5499 312 236 22 11 chr6 143897988 143898077 -45381477 + L1MEc LINE L1 1601 1690 -4917 2384 100 0 0 chr6 143898077 143898387 -45381167 + AluSg SINE Alu 1 310 0 1675 243 3 6 chr6 143898451 143898805 -45380749 + MLT1A1 LTR MaLR 1 353 -12 554 314 11 0 chr6 143898885 143899111 -45380443 + L1MEc LINE L1 1596 2012 -4595 410 94 0 222 chr6 143899676 143899793 -45379761 + MLT1B LTR MaLR 202 292 -98 324 256 83 16 chr6 143899940 143900061 -45379493 + MIR SINE MIR 47 175 -87 1389 146 23 107 chr6 143900590 143900899 -45378655 + MLT1B LTR MaLR 108 390 0 916 286 106 37 chr6 143901032 143901277 -45378277 + L1MC4a LINE L1 5326 5553 -2255 2130 109 0 22 chr6 143901277 143901590 -45377964 + AluSc SINE Alu 1 306 -3 916 286 106 37 chr6 143901590 143901663 -45377891 + L1MC4a LINE L1 5553 5619 -2189 360 0 0 0 chr6 143901663 143901703 -45377851 + (CA)n Simple_repeat Simple_repeat 2 41 0 916 286 106 37 chr6 143901703 143901900 -45377654 + L1MC4a LINE L1 5619 5878 -1930 1927 150 10 0 chr6 143901912 143902219 -45377335 + AluSx SINE Alu 1 310 -2 720 64 0 0 chr6 143902242 143902336 -45377218 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 1066 269 144 19 chr6 143903923 143904354 -45375200 - MER110 LTR ERV1 0 491 7 603 274 38 0 chr6 143904393 143904550 -45375004 + MIR SINE MIR 100 262 0 841 185 21 11 chr6 143904628 143905010 -45374544 + GA-rich Low_complexity Low_complexity 1 386 0 230 321 75 80 chr6 143905830 143905890 -45373664 - MER5A DNA MER1_type -2 187 128 2440 59 0 3 chr6 143905890 143906194 -45373360 + AluY SINE Alu 1 303 -8 230 321 75 80 chr6 143906194 143906320 -45373234 - MER5A DNA MER1_type -61 128 2 191 36 36 0 chr6 143906567 143906595 -45372959 + (CA)n Simple_repeat Simple_repeat 1 29 0 407 315 40 25 chr6 143907482 143907682 -45371872 + L2 LINE L2 2567 2769 -545 288 354 82 68 chr6 143907764 143908117 -45371437 + L2 LINE L2 2914 3271 -1 199 261 22 76 chr6 143908277 143908369 -45371185 + MIR3 SINE MIR 111 197 -11 303 336 9 9 chr6 143908652 143908765 -45370789 - MIR SINE MIR -75 133 21 3774 183 33 10 chr6 143909233 143910204 -45369350 - L1MC2 LINE L1 -377 5967 4978 1081 228 17 67 chr6 143910242 143910662 -45368892 - MSTB2 LTR MaLR 0 457 1 2294 238 28 8 chr6 143910667 143911277 -45368277 - L1MC2 LINE L1 -1212 4934 4313 30 0 0 0 chr6 143911746 143911776 -45367778 + AT_rich Low_complexity Low_complexity 1 30 0 299 295 57 9 chr6 143911813 143911918 -45367636 + MIR SINE MIR 71 180 -82 22 0 0 0 chr6 143912506 143912528 -45367026 + AT_rich Low_complexity Low_complexity 1 22 0 2285 96 0 0 chr6 143913077 143913370 -45366184 + AluSc SINE Alu 1 293 -16 6699 23 12 1 chr6 143915333 143916168 -45363386 + L1PA3 LINE L1 5328 6171 0 629 338 47 3 chr6 143916234 143916551 -45363003 + Charlie7 DNA MER1_type 214 544 -2068 * 1545 263 36 49 chr6 143916548 143917049 -45362505 + Charlie7 DNA MER1_type 1742 2235 -377 2259 96 0 10 chr6 143917049 143917361 -45362193 + AluSx SINE Alu 1 309 -3 1545 263 36 49 chr6 143917361 143917468 -45362086 + Charlie7 DNA MER1_type 2235 2342 -270 787 281 132 8 chr6 143917724 143918094 -45361460 + L1ME3A LINE L1 5434 5849 -321 371 216 186 10 chr6 143918424 143918521 -45361033 + MIR SINE MIR 122 235 -27 41508 61 4 1 chr6 143918521 143924624 -45354930 - L1PA5 LINE L1 -3 6151 27 349 170 205 23 chr6 143924624 143924795 -45354759 + Charlie7 DNA MER1_type 2323 2524 -88 3276 269 114 24 chr6 143925288 143926609 -45352945 - L2 LINE L2 -101 3212 1782 1012 313 101 5 chr6 143926612 143926989 -45352565 - L2 LINE L2 -1820 1494 1082 299 342 8 8 chr6 143927547 143927664 -45351890 - MIR SINE MIR -13 249 133 26 30 0 0 chr6 143928705 143928738 -45350816 + AT_rich Low_complexity Low_complexity 1 33 0 1995 211 50 81 chr6 143928808 143929454 -45350100 + MLT1E2 LTR MaLR 1 626 0 2311 156 18 38 chr6 143929459 143929902 -45349652 - Tigger2a DNA MER2_type 0 434 1 185 91 0 30 chr6 143931954 143931987 -45347567 + (TTC)n Simple_repeat Simple_repeat 2 33 0 305 315 120 5 chr6 143932914 143933098 -45346456 - L1MC4a LINE L1 -1836 5972 5768 685 295 15 63 chr6 143933134 143933402 -45346152 + MIR SINE MIR 8 262 0 857 281 46 61 chr6 143933434 143933502 -45346052 - L1MC4a LINE L1 -2049 5759 5691 2040 99 0 0 chr6 143933502 143933790 -45345764 - AluSg1 SINE Alu 0 305 18 857 281 46 61 chr6 143933790 143934048 -45345506 - L1MC4a LINE L1 -2117 5691 5437 1947 116 3 52 chr6 143934050 143934360 -45345194 + AluSx SINE Alu 1 295 -17 220 266 85 32 chr6 143934549 143934643 -45344911 - MIR SINE MIR -89 173 75 180 0 0 0 chr6 143934730 143934750 -45344804 + (TG)n Simple_repeat Simple_repeat 1 20 0 * 222 37 0 0 chr6 143934749 143934776 -45344778 + (GA)n Simple_repeat Simple_repeat 1 27 0 352 264 64 18 chr6 143934856 143934966 -45344588 + MIR SINE MIR 78 192 -70 722 262 77 32 chr6 143935242 143935490 -45344064 - MIR SINE MIR 0 262 4 463 278 97 14 chr6 143935708 143935852 -45343702 - L3 LINE CR1 -38 1539 1384 703 221 15 0 chr6 143935852 143935983 -45343571 - FLAM_A SINE Alu 0 133 1 1913 182 51 28 chr6 143936010 143936544 -45343010 - MLT2A2 LTR ERVL -9 545 1 736 319 69 18 chr6 143936554 143936889 -45342665 - L3 LINE CR1 -237 1340 989 469 296 55 45 chr6 143937607 143937827 -45341727 - MIR SINE MIR -9 253 32 252 223 21 64 chr6 143939725 143939819 -45339735 + L3 LINE CR1 572 661 -916 281 155 17 0 chr6 143940010 143940068 -45339486 + GA-rich Low_complexity Low_complexity 2 60 0 201 282 0 26 chr6 143940090 143940168 -45339386 + GA-rich Low_complexity Low_complexity 4 79 0 1530 249 44 3 chr6 143942071 143942460 -45337094 - MER119 DNA MER1_type 0 583 179 813 244 17 6 chr6 143942508 143942680 -45336874 - MER119 DNA MER1_type -404 179 6 1718 186 0 3 chr6 143943335 143943630 -45335924 + AluSx SINE Alu 3 296 -16 2025 142 40 0 chr6 143944141 143944465 -45335089 + MER1B DNA MER1_type 1 337 0 23 0 0 0 chr6 143945741 143945764 -45333790 + AT_rich Low_complexity Low_complexity 1 23 0 504 59 0 0 chr6 143947157 143947225 -45332329 + (TC)n Simple_repeat Simple_repeat 2 69 0 225 0 0 0 chr6 143947224 143947249 -45332305 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 2022 131 0 6 chr6 143947794 143948107 -45331447 + AluSx SINE Alu 1 311 -1 376 320 67 22 chr6 143948941 143949119 -45330435 + MIR SINE MIR 5 190 -72 417 344 37 25 chr6 143950418 143950645 -45328909 + MIR SINE MIR 4 232 -30 464 243 161 71 chr6 143951053 143951269 -45328285 + MLT1I LTR MaLR 5 200 -209 2405 90 0 0 chr6 143951269 143951579 -45327975 + AluSg SINE Alu 1 310 0 464 243 161 71 chr6 143951579 143951728 -45327826 + MLT1I LTR MaLR 200 403 -6 210 200 0 0 chr6 143952132 143952172 -45327382 - L2 LINE L2 0 3272 3233 194 310 95 43 chr6 143952176 143952292 -45327262 + MIR SINE MIR 110 231 -31 390 306 39 1 chr6 143952305 143952443 -45327111 + MIR SINE MIR 4 148 -68 181 382 69 20 chr6 143952548 143952650 -45326904 - L2 LINE L2 -43 3229 3123 353 21 0 21 chr6 143952899 143952946 -45326608 + (TA)n Simple_repeat Simple_repeat 1 46 0 318 194 0 0 chr6 143954144 143954211 -45325343 + (TCCA)n Simple_repeat Simple_repeat 4 70 0 1096 195 49 2 chr6 143954366 143954788 -45324766 + L1MB5 LINE L1 5607 6128 -46 239 200 0 0 chr6 143954852 143954902 -45324652 + L1MB5 LINE L1 6118 6167 -7 573 328 49 28 chr6 143955799 143956046 -45323508 - MIR SINE MIR -3 259 8 252 200 55 0 chr6 143959232 143959287 -45320267 + MIR SINE MIR 119 176 -86 1514 322 103 61 chr6 143959301 143959890 -45319664 - L2 LINE L2 -1 3312 2749 1924 141 7 20 chr6 143959890 143960189 -45319365 - AluJo SINE Alu -17 295 1 1514 322 103 61 chr6 143960189 143961503 -45318051 - L2 LINE L2 -564 2749 1319 1779 50 0 0 chr6 143961795 143962015 -45317539 + L1PA7 LINE L1 5927 6146 -8 25 0 0 0 chr6 143965203 143965228 -45314326 + AT_rich Low_complexity Low_complexity 1 25 0 330 26 0 0 chr6 143966413 143966452 -45313102 + (CA)n Simple_repeat Simple_repeat 2 40 0 205 309 0 0 chr6 143967166 143967221 -45312333 + (CA)n Simple_repeat Simple_repeat 2 56 0 194 304 217 9 chr6 143967257 143967372 -45312182 + MIR3 SINE MIR 47 185 -23 1021 66 96 0 chr6 143967597 143967733 -45311821 - AluY SINE Alu -8 303 155 297 271 116 39 chr6 143968212 143968341 -45311213 - MIR SINE MIR -7 255 117 697 257 78 9 chr6 143968371 143968589 -45310965 + MIR SINE MIR 30 262 0 1619 145 62 21 chr6 143968820 143969109 -45310445 + MER1B DNA MER1_type 39 339 0 44 75 0 0 chr6 143970014 143970107 -45309447 + AT_rich Low_complexity Low_complexity 1 93 0 24 0 0 0 chr6 143970410 143970434 -45309120 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr6 143970758 143970786 -45308768 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 143971063 143971085 -45308469 + AT_rich Low_complexity Low_complexity 1 22 0 386 364 0 8 chr6 143971432 143971550 -45308004 - MIR SINE MIR -72 136 20 21 57 0 0 chr6 143971818 143971853 -45307701 + AT_rich Low_complexity Low_complexity 1 35 0 198 209 0 0 chr6 143973048 143973091 -45306463 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 1972 142 0 0 chr6 143974033 143974335 -45305219 + AluSx SINE Alu 1 302 0 21 0 0 0 chr6 143974620 143974641 -45304913 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 143976414 143976442 -45303112 + AT_rich Low_complexity Low_complexity 1 28 0 192 40 0 0 chr6 143977323 143977348 -45302206 + (TG)n Simple_repeat Simple_repeat 2 26 0 269 323 0 0 chr6 143977624 143977689 -45301865 - L2 LINE L2 -5 3308 3244 437 165 10 72 chr6 143978384 143978481 -45301073 - MER103 DNA DNA -69 97 7 424 323 21 74 chr6 143980137 143980326 -45299228 + MER91A DNA MER1_type 4 182 -14 308 272 64 75 chr6 143980416 143980589 -45298965 + L2 LINE L2 2921 3091 -181 231 114 0 0 chr6 143980945 143980980 -45298574 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 503 92 27 65 chr6 143982433 143982618 -45296936 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 23 0 0 0 chr6 143982618 143982641 -45296913 + AT_rich Low_complexity Low_complexity 1 23 0 208 122 0 49 chr6 143982650 143982691 -45296863 + (GAAA)n Simple_repeat Simple_repeat 3 41 0 851 144 11 11 chr6 143982691 143982865 -45296689 + GA-rich Low_complexity Low_complexity 4 177 0 311 284 12 0 chr6 143985003 143985084 -45294470 + MIR SINE MIR 58 139 -123 205 164 22 82 chr6 143985308 143985442 -45294112 + (TTA)n Simple_repeat Simple_repeat 3 128 0 186 43 0 0 chr6 143986187 143986210 -45293344 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 180 353 29 0 chr6 143987004 143987072 -45292482 + MIR SINE MIR 84 153 -109 189 209 0 47 chr6 143987133 143987176 -45292378 + MIR SINE MIR 151 191 -71 2138 101 0 3 chr6 143987779 143988075 -45291479 + AluSg SINE Alu 1 295 -15 217 200 0 0 chr6 143989371 143989406 -45290148 + polypurine Low_complexity Low_complexity 1 35 0 356 306 105 8 chr6 143989562 143989686 -45289868 + MIR SINE MIR 2 137 -125 234 298 123 80 chr6 143989769 143990017 -45289537 - LTR16B LTR ERVL -96 368 103 1718 183 40 14 chr6 143990017 143990367 -45289187 - MLT1A1 LTR MaLR -2 363 5 234 298 123 80 chr6 143990367 143990420 -45289134 - LTR16B LTR ERVL -361 103 54 810 258 7 72 chr6 143990774 143991053 -45288501 + MIR SINE MIR 2 262 0 323 253 25 0 chr6 143991468 143991547 -45288007 + L1MC4 LINE L1 6619 6699 -1343 471 309 19 40 chr6 143991629 143992001 -45287553 - L1ME4a LINE L1 -122 5999 5636 217 259 0 0 chr6 143992135 143992189 -45287365 + A-rich Low_complexity Low_complexity 4 57 0 545 316 70 55 chr6 143994882 143995138 -45284416 + MIR SINE MIR 3 262 0 245 288 0 0 chr6 143995418 143995477 -45284077 - MIR SINE MIR -3 259 201 298 344 51 40 chr6 143997105 143997381 -45282173 - L2 LINE L2 -669 2645 2367 863 246 73 60 chr6 143997408 143997873 -45281681 - L1ME1 LINE L1 -3 6232 5718 2841 6 0 0 chr6 143998416 143998727 -45280827 - AluY SINE Alu 0 311 1 294 207 195 24 chr6 143999119 143999288 -45280266 - LTR50 LTR ERVL -25 770 573 2382 68 0 0 chr6 143999653 143999949 -45279605 - AluY SINE Alu -15 296 1 424 259 74 0 chr6 144000008 144000143 -45279411 - LTR41 LTR ERVL -628 145 1 400 333 62 62 chr6 144000453 144000838 -45278716 + HAL1b LINE L1 70 454 -894 258 272 9 88 chr6 144001193 144001307 -45278247 + L2 LINE L2 3204 3308 -5 24 53 0 0 chr6 144002461 144002499 -45277055 + AT_rich Low_complexity Low_complexity 1 38 0 2512 46 3 0 chr6 144002647 144002952 -45276602 + AluY SINE Alu 1 306 -5 4696 256 63 5 chr6 144003202 144004688 -45274866 - L1ME1 LINE L1 -986 5229 3658 660 246 57 4 chr6 144004692 144004940 -45274614 + L1M4 LINE L1 3147 3407 -2739 * 1987 241 84 76 chr6 144004935 144004982 -45274572 - L1ME1 LINE L1 -3021 3194 3149 2410 65 3 0 chr6 144004982 144005289 -45274265 - AluY SINE Alu -3 308 1 1987 241 84 76 chr6 144005289 144006052 -45273502 - L1ME1 LINE L1 -3066 3149 2393 1627 185 49 0 chr6 144006052 144006338 -45273216 - AluJb SINE Alu -12 300 1 1987 241 84 76 chr6 144006338 144007117 -45272437 - L1ME1 LINE L1 -3822 2393 1598 2150 271 76 40 chr6 144007188 144008293 -45271261 - L1ME1 LINE L1 -5024 1372 228 212 298 58 25 chr6 144008444 144008565 -45270989 - L2 LINE L2 -1291 2023 1899 1717 161 115 5 chr6 144009391 144009775 -45269779 - MSTB LTR MaLR 0 426 1 2132 106 0 0 chr6 144010641 144010952 -45268602 - AluY SINE Alu 0 311 1 222 344 30 23 chr6 144012884 144013015 -45266539 - L2 LINE L2 -872 2442 2311 188 363 164 28 chr6 144013250 144013647 -45265907 - L2 LINE L2 -1267 2047 1597 27 49 0 0 chr6 144014153 144014194 -45265360 + AT_rich Low_complexity Low_complexity 1 41 0 472 138 9 37 chr6 144016118 144016191 -45263363 + L1MA7 LINE L1 6186 6257 -34 2373 130 49 44 chr6 144016191 144016422 -45263132 - Tigger2a DNA MER2_type -2275 433 198 2169 134 0 0 chr6 144016422 144016753 -45262801 + AluSx SINE Alu 1 312 0 2373 130 49 44 chr6 144016753 144016951 -45262603 - Tigger2a DNA MER2_type -2510 198 2 472 138 9 37 chr6 144016951 144016986 -45262568 + L1MA7 LINE L1 6257 6291 0 241 328 15 30 chr6 144017587 144017721 -45261833 - MARNA DNA Mariner -41 545 414 182 328 17 0 chr6 144018035 144018093 -45261461 + MIR SINE MIR 175 233 -29 212 251 312 50 chr6 144020752 144020951 -45258603 - MIR SINE MIR -6 256 6 2384 119 0 14 chr6 144020952 144021305 -45258249 - MER7A DNA MER2_type 0 346 1 274 310 115 9 chr6 144021310 144021423 -45258131 - MIR SINE MIR -114 148 24 406 255 92 0 chr6 144022093 144022191 -45257363 - MIR3 SINE MIR -9 199 93 2102 135 0 0 chr6 144022278 144022575 -45256979 - AluSx SINE Alu -15 297 1 433 84 67 0 chr6 144023125 144023244 -45256310 + (TA)n Simple_repeat Simple_repeat 1 127 0 23 54 0 0 chr6 144023433 144023470 -45256084 + AT_rich Low_complexity Low_complexity 1 37 0 274 239 274 25 chr6 144025121 144025439 -45254115 - L1ME4a LINE L1 -1 6120 5724 1080 272 66 55 chr6 144025461 144025796 -45253758 + L2 LINE L2 66 409 -2905 2053 130 7 0 chr6 144025796 144026097 -45253457 - AluSx SINE Alu -9 303 1 1080 272 66 55 chr6 144026097 144026199 -45253355 + L2 LINE L2 409 508 -2806 3210 129 44 31 chr6 144026208 144026609 -45252945 + MER1A DNA MER1_type 4 415 -2287 223 26 0 53 chr6 144026609 144026647 -45252907 + (TAA)n Simple_repeat Simple_repeat 1 36 0 3210 129 44 31 chr6 144026647 144026764 -45252790 + MER1A DNA MER1_type 415 529 0 2059 297 153 61 chr6 144026764 144027305 -45252249 + L2 LINE L2 514 1004 -2310 2247 82 0 26 chr6 144027305 144027608 -45251946 - AluY SINE Alu -16 295 1 2059 297 153 61 chr6 144027608 144028617 -45250937 + L2 LINE L2 1004 2207 -1107 2177 125 3 0 chr6 144029391 144029694 -45249860 - AluSx SINE Alu -8 304 1 249 378 0 0 chr6 144029806 144029933 -45249621 - L1M4 LINE L1 -2061 4085 3959 219 315 0 90 chr6 144030563 144030652 -45248902 - MIR SINE MIR -68 194 114 899 272 34 4 chr6 144030727 144030962 -45248592 + MIR SINE MIR 7 248 -14 2035 181 6 3 chr6 144031106 144031470 -45248084 - MLT1A1 LTR MaLR 0 365 1 434 65 16 0 chr6 144031843 144031905 -45247649 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 24 32 0 0 chr6 144032066 144032097 -45247457 + AT_rich Low_complexity Low_complexity 1 31 0 180 335 63 44 chr6 144032204 144032362 -45247192 - MIR SINE MIR -70 192 32 617 165 116 0 chr6 144032684 144032805 -45246749 + AluJo SINE Alu 2 136 -176 399 313 45 6 chr6 144032990 144033169 -45246385 - MIR SINE MIR -30 232 47 797 347 157 29 chr6 144033180 144034179 -45245375 + L3 LINE CR1 445 1571 -6 292 380 88 18 chr6 144035208 144035434 -45244120 - L2 LINE L2 -183 3089 2848 * 1092 353 117 23 chr6 144035418 144036233 -45243321 - L2 LINE L2 -418 2896 1933 2176 121 7 0 chr6 144036233 144036538 -45243016 + AluSc SINE Alu 1 307 -2 1092 353 117 23 chr6 144036538 144036910 -45242644 - L2 LINE L2 -1381 1933 1597 1981 95 22 4 chr6 144037097 144037371 -45242183 + AluSx SINE Alu 34 312 0 183 42 0 0 chr6 144038702 144038726 -45240828 + (TG)n Simple_repeat Simple_repeat 2 25 0 461 352 71 50 chr6 144040520 144041086 -45238468 - L2 LINE L2 -495 2819 2242 3305 144 6 8 chr6 144041333 144041859 -45237695 - LTR45 LTR ERV1 0 525 1 241 270 149 50 chr6 144042097 144042319 -45237235 + MER112 DNA MER1_type 1 244 -16 207 406 0 0 chr6 144043046 144043110 -45236444 + L2 LINE L2 3123 3186 -86 1178 304 79 9 chr6 144043116 144043570 -45235984 - L2 LINE L2 -1 3312 2827 522 262 318 37 chr6 144043613 144044041 -45235513 - L2 LINE L2 -751 2563 2016 246 283 0 0 chr6 144044509 144044569 -45234985 + (TG)n Simple_repeat Simple_repeat 1 60 0 28 29 0 0 chr6 144046128 144046163 -45233391 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr6 144097483 144097507 -45182047 + AT_rich Low_complexity Low_complexity 1 24 0 1810 164 0 13 chr6 144097636 144097934 -45181620 + AluJo SINE Alu 1 294 -18 21 36 0 0 chr6 144098279 144098307 -45181247 + AT_rich Low_complexity Low_complexity 1 28 0 1197 85 0 23 chr6 144098462 144098638 -45180916 - L1PA13 LINE L1 -6 6157 5986 21 36 0 0 chr6 144098727 144098755 -45180799 + AT_rich Low_complexity Low_complexity 1 28 0 701 187 8 0 chr6 144099241 144099364 -45180190 + FLAM_C SINE Alu 1 124 -19 335 308 108 59 chr6 144099570 144100031 -45179523 + L1M4 LINE L1 2786 3269 -2877 293 181 12 84 chr6 144100915 144100998 -45178556 + MER116 DNA Mariner 4 80 0 210 71 0 0 chr6 144102440 144102468 -45177086 + (GGGGA)n Simple_repeat Simple_repeat 5 32 0 1507 201 16 16 chr6 144104386 144104694 -45174860 + AluJb SINE Alu 1 308 -4 1291 198 92 48 chr6 144105595 144105974 -45173580 - MSTD LTR MaLR 0 396 1 2310 89 0 10 chr6 144106180 144106484 -45173070 - AluSc SINE Alu -8 301 1 441 0 0 0 chr6 144106670 144106719 -45172835 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 2052 107 0 14 chr6 144106721 144107001 -45172553 - AluSc SINE Alu -33 276 1 46 19 0 0 chr6 144110348 144110401 -45169153 + AT_rich Low_complexity Low_complexity 1 53 0 1058 167 6 0 chr6 144111467 144111635 -45167919 + FAM SINE Alu 1 169 -6 1625 120 41 22 chr6 144113510 144113777 -45165777 - MER7A DNA MER2_type -65 281 12 309 348 171 0 chr6 144114211 144114369 -45165185 - MIR SINE MIR -7 255 71 820 240 77 6 chr6 144114885 144115068 -45164486 + MER69 DNA AcHobo 1 196 -1030 247 235 129 24 chr6 144115096 144115181 -45164373 + MER69 DNA AcHobo 2428 2521 -5 267 31 0 0 chr6 144117182 144117214 -45162340 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 180 152 0 0 chr6 144117961 144117994 -45161560 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 251 211 18 0 chr6 144118233 144118290 -45161264 - L2 LINE L2 -98 3215 3158 186 309 24 0 chr6 144118539 144118623 -45160931 - L2 LINE L2 -706 2608 2523 210 271 135 31 chr6 144120566 144120662 -45158892 - L2 LINE L2 -36 3277 3172 474 209 30 30 chr6 144120982 144121116 -45158438 - MER103 DNA DNA -30 136 3 246 314 21 78 chr6 144121212 144121403 -45158151 - L2 LINE L2 -463 2851 2672 2149 182 0 19 chr6 144121536 144121964 -45157590 + L1PB4 LINE L1 5737 6156 0 21 0 0 0 chr6 144122801 144122822 -45156732 + AT_rich Low_complexity Low_complexity 1 21 0 241 325 193 0 chr6 144123195 144123278 -45156276 - L2 LINE L2 -17 3255 3157 286 378 97 11 chr6 144123530 144123797 -45155757 - L2 LINE L2 -459 2855 2566 2027 226 77 53 chr6 144123804 144124543 -45155011 + L1ME1 LINE L1 5406 6162 -4 293 359 129 24 chr6 144124550 144125186 -45154368 - L2 LINE L2 -757 2557 1855 21 36 0 0 chr6 144126141 144126169 -45153385 + AT_rich Low_complexity Low_complexity 1 28 0 562 228 6 30 chr6 144126466 144126633 -45152921 - MER103 DNA DNA -2 164 2 324 311 0 0 chr6 144129050 144129124 -45150430 - L2 LINE L2 -3 3269 3196 890 211 10 5 chr6 144131680 144131888 -45147666 - MER3 DNA MER1_type 0 209 1 351 266 136 58 chr6 144131923 144132077 -45147477 - MIR SINE MIR -2 260 95 1561 144 23 59 chr6 144132324 144132629 -45146925 - AluJo SINE Alu -18 294 1 243 61 0 0 chr6 144135201 144135234 -45144320 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1124 207 171 12 chr6 144136680 144136926 -45142628 + AluJb SINE Alu 2 286 -16 407 269 165 36 chr6 144137464 144137529 -45142025 + L1ME3 LINE L1 3788 3843 -2303 2201 113 0 25 chr6 144137529 144137847 -45141707 + AluSg SINE Alu 1 310 0 407 269 165 36 chr6 144137847 144138115 -45141439 + L1ME3 LINE L1 3843 4164 -1982 595 261 121 57 chr6 144138148 144138907 -45140647 + L1ME3 LINE L1 4412 5219 -927 1094 286 20 11 chr6 144139027 144139384 -45140170 + L1ME3 LINE L1 5497 5856 -306 21 0 0 0 chr6 144142446 144142467 -45137087 + AT_rich Low_complexity Low_complexity 1 21 0 2146 114 0 7 chr6 144142777 144143083 -45136471 + AluSg SINE Alu 1 304 -6 266 265 0 15 chr6 144144049 144144117 -45135437 + CT-rich Low_complexity Low_complexity 5 71 0 202 158 26 0 chr6 144144744 144144782 -45134772 + L2 LINE L2 3230 3268 -4 439 261 34 18 chr6 144144982 144145143 -45134411 - MIR SINE MIR -62 146 5 235 231 83 0 chr6 144147412 144147520 -45132034 - L1ME4a LINE L1 -6 6115 5999 2131 103 3 7 chr6 144147621 144147921 -45131633 + AluSx SINE Alu 1 299 -13 390 279 45 0 chr6 144148035 144148146 -45131408 + MIR SINE MIR 5 120 -142 652 151 0 0 chr6 144148146 144148239 -45131315 - 5S rRNA rRNA -28 93 1 301 309 98 0 chr6 144148239 144148362 -45131192 + MIR SINE MIR 116 250 -12 329 344 85 16 chr6 144148414 144148603 -45130951 - MIR SINE MIR -48 214 13 497 292 46 28 chr6 144148651 144148867 -45130687 - L1ME4a LINE L1 -371 5750 5531 224 256 116 47 chr6 144149003 144149089 -45130465 + L3 LINE CR1 1397 1488 -89 204 265 69 49 chr6 144149094 144149196 -45130358 + MIR SINE MIR 99 202 -60 298 302 130 12 chr6 144149255 144149424 -45130130 - MIR SINE MIR -12 250 62 1036 300 153 32 chr6 144149746 144150400 -45129154 - L3 LINE CR1 -2 1575 843 335 285 113 13 chr6 144150732 144150883 -45128671 - MIR3 SINE MIR -7 201 36 2150 112 3 0 chr6 144150903 144151215 -45128339 - AluSp SINE Alu 0 313 1 216 200 22 0 chr6 144151441 144151486 -45128068 - L2 LINE L2 -1 3312 3267 330 286 64 53 chr6 144151548 144151719 -45127835 + MIR SINE MIR 64 236 -26 1959 126 42 0 chr6 144151998 144152284 -45127270 - AluJb SINE Alu -14 298 1 22 0 0 0 chr6 144154012 144154034 -45125520 + AT_rich Low_complexity Low_complexity 1 22 0 1490 150 6 117 chr6 144154471 144154804 -45124750 - AluJo SINE Alu -6 296 1 21 0 0 0 chr6 144155578 144155599 -45123955 + AT_rich Low_complexity Low_complexity 1 21 0 695 143 9 9 chr6 144156630 144156742 -45122812 - MER45A DNA AcHobo 0 178 67 1973 61 0 86 chr6 144160244 144160555 -45118999 - AluY SINE Alu 0 313 27 245 299 65 70 chr6 144160655 144160811 -45118743 + MIR SINE MIR 51 208 -54 1855 152 3 7 chr6 144160811 144161133 -45118421 + AluSx SINE Alu 1 321 0 245 299 65 70 chr6 144161133 144161176 -45118378 + MIR SINE MIR 208 250 -12 6687 122 30 6 chr6 144162974 144164783 -45114771 - L1MA3 LINE L1 0 6305 4449 2416 122 44 0 chr6 144164783 144165169 -45114385 + L1MA3 LINE L1 4060 4462 -1684 456 329 28 24 chr6 144166764 144166977 -45112577 - L2 LINE L2 0 3313 3100 23 68 0 0 chr6 144168634 144168678 -45110876 + AT_rich Low_complexity Low_complexity 1 44 0 760 126 0 50 chr6 144170537 144170753 -45108801 + AluJb SINE Alu 1 288 -24 244 349 18 47 chr6 144172350 144172464 -45107090 + MER5B DNA MER1_type 1 110 -68 1987 140 7 0 chr6 144172464 144172756 -45106798 - AluJb SINE Alu -16 296 3 244 349 18 47 chr6 144172756 144172810 -45106744 + MER5B DNA MER1_type 110 164 -14 7371 29 10 6 chr6 144172810 144174101 -45105453 + L1PA3 LINE L1 4861 6155 0 21 0 0 0 chr6 144174221 144174242 -45105312 + AT_rich Low_complexity Low_complexity 1 21 0 1818 166 3 7 chr6 144174242 144174537 -45105017 + AluJb SINE Alu 1 294 -18 574 259 22 60 chr6 144174916 144174980 -45104574 + MER5B DNA MER1_type 1 66 -112 1236 191 0 108 chr6 144174980 144175315 -45104239 + AluJb SINE Alu 1 299 -13 574 259 22 60 chr6 144175315 144175435 -45104119 + MER5B DNA MER1_type 66 178 0 2261 95 0 0 chr6 144175688 144175997 -45103557 + AluSx SINE Alu 1 309 0 2066 186 16 16 chr6 144176929 144177317 -45102237 + MLT1B LTR MaLR 1 388 -2 30 27 0 0 chr6 144177333 144177370 -45102184 + AT_rich Low_complexity Low_complexity 1 37 0 1136 261 88 20 chr6 144177754 144177811 -45101743 - L2 LINE L2 -733 2581 2529 2474 164 9 9 chr6 144177811 144178237 -45101317 - MSTB LTR MaLR 0 426 1 1136 261 88 20 chr6 144178237 144178577 -45100977 - L2 LINE L2 -785 2529 2157 598 182 154 53 chr6 144178743 144178860 -45100694 + LTR37B LTR ERV1 186 290 -178 294 106 0 0 chr6 144178860 144178907 -45100647 + (TG)n Simple_repeat Simple_repeat 2 48 0 598 182 154 53 chr6 144178907 144179036 -45100518 + LTR37B LTR ERV1 290 457 -11 387 0 0 0 chr6 144179279 144179322 -45100232 + (CA)n Simple_repeat Simple_repeat 2 44 0 22 80 0 0 chr6 144180485 144180535 -45099019 + AT_rich Low_complexity Low_complexity 1 50 0 580 206 33 111 chr6 144181076 144181319 -45098235 - MER112 DNA MER1_type -6 254 31 2422 86 0 0 chr6 144182135 144182438 -45097116 - AluSp SINE Alu 0 313 11 450 298 25 19 chr6 144182900 144183061 -45096493 - MIR SINE MIR -29 233 72 636 294 96 90 chr6 144185010 144185928 -45093626 - L2 LINE L2 -24 3289 2366 240 236 94 31 chr6 144185931 144186058 -45093496 - MLT1L LTR MaLR -5 610 476 3283 123 56 89 chr6 144186408 144187091 -45092463 + L1MC2 LINE L1 5641 6300 -44 1779 176 3 0 chr6 144187091 144187380 -45092174 - AluSx SINE Alu -22 290 1 3283 123 56 89 chr6 144187380 144187413 -45092141 + L1MC2 LINE L1 6300 6333 -11 325 348 59 7 chr6 144187490 144187625 -45091929 - L2 LINE L2 -938 2376 2235 1946 123 67 22 chr6 144187665 144188024 -45091530 - THE1C LTR MaLR 0 375 1 2073 104 72 36 chr6 144188078 144188609 -45090945 + MER51A LTR ERV1 1 634 0 365 248 109 29 chr6 144188611 144188748 -45090806 - L2 LINE L2 -1189 2125 1978 610 298 63 10 chr6 144189018 144189465 -45090089 - L1MEd LINE L1 -861 1629 1062 891 220 76 55 chr6 144189465 144189864 -45089690 - MER69 DNA AcHobo -2 2524 2092 746 238 65 22 chr6 144189867 144190098 -45089456 - MER69 DNA AcHobo -2279 247 7 360 261 72 54 chr6 144190107 144190494 -45089060 - L1MEd LINE L1 -5041 1078 685 484 275 162 35 chr6 144190879 144191224 -45088330 - L3 LINE CR1 -454 1123 735 216 67 0 0 chr6 144191934 144191964 -45087590 + (TAA)n Simple_repeat Simple_repeat 2 31 0 390 149 231 0 chr6 144192481 144192602 -45086952 - MER69 DNA AcHobo -100 2426 2278 832 222 125 117 chr6 144193844 144194604 -45084950 + LTR41 LTR ERVL 8 773 0 815 330 3 24 chr6 144195662 144195950 -45083604 - L2 LINE L2 -2993 321 40 468 269 31 78 chr6 144196206 144196462 -45083092 + L2 LINE L2 2232 2475 -839 2983 127 73 9 chr6 144196492 144197027 -45082527 - L1MB3 LINE L1 -2 6181 5613 231 215 0 0 chr6 144197066 144197131 -45082423 + CT-rich Low_complexity Low_complexity 2 66 0 283 331 32 19 chr6 144197131 144197223 -45082331 + L2 LINE L2 1135 1231 -2083 534 223 18 0 chr6 144197223 144197335 -45082219 - MER81 DNA DNA 0 114 1 283 331 32 19 chr6 144197335 144197396 -45082158 + L2 LINE L2 1231 1290 -2024 494 124 83 82 chr6 144197397 144197529 -45082025 - L1MA8 LINE L1 -279 6012 5895 2058 253 83 51 chr6 144197530 144198357 -45081197 + L2 LINE L2 1318 2171 -1143 4929 134 58 29 chr6 144198370 144199292 -45080262 - L1MA8 LINE L1 -5 6286 5339 263 235 0 0 chr6 144199292 144199340 -45080214 + MER39 LTR ERV1 1 48 -659 534 218 41 74 chr6 144199340 144199570 -45079984 + LTR26E LTR ERV1 1 293 -329 27 0 0 0 chr6 144199571 144199598 -45079956 + AT_rich Low_complexity Low_complexity 1 27 0 1193 156 18 23 chr6 144199612 144199830 -45079724 - AluSx SINE Alu -94 218 2 1789 199 31 29 chr6 144199830 144200181 -45079373 + LTR26E LTR ERV1 271 622 0 1371 232 50 32 chr6 144200181 144200610 -45078944 + MER39 LTR ERV1 70 564 -1 1213 168 0 4 chr6 144200610 144200848 -45078706 - L1 LINE L1 -805 5341 5105 1246 259 46 30 chr6 144200862 144201233 -45078321 + L2 LINE L2 2163 2539 -775 209 284 62 12 chr6 144201575 144201656 -45077898 - MIR SINE MIR -11 251 167 * 279 284 157 0 chr6 144201652 144201754 -45077800 + L2 LINE L2 3146 3263 -9 343 236 138 31 chr6 144201777 144201916 -45077638 - MIR SINE MIR -62 146 5 408 91 45 0 chr6 144252061 144252127 -45027427 + AluSp/q SINE Alu 234 302 -11 377 321 30 8 chr6 144252132 144252263 -45027291 + HAL1b LINE L1 1205 1338 -10 355 218 175 31 chr6 144253380 144253609 -45025945 - MER20B DNA MER1_type 0 783 522 1721 190 0 29 chr6 144253742 144254053 -45025501 + AluJo SINE Alu 1 302 -10 413 275 154 0 chr6 144254119 144254268 -45025286 - MER20B DNA MER1_type -592 191 20 225 233 92 117 chr6 144254278 144254398 -45025156 - MIR3 SINE MIR -48 160 44 439 386 23 0 chr6 144255211 144255382 -45024172 - MIR3 SINE MIR -13 195 21 24 0 0 0 chr6 144256130 144256154 -45023400 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 144256381 144256410 -45023144 + AT_rich Low_complexity Low_complexity 1 29 0 265 285 184 22 chr6 144256578 144256717 -45022837 + MIR3 SINE MIR 41 205 -3 1148 199 85 45 chr6 144256779 144257110 -45022444 - MER2 DNA MER2_type 0 344 1 454 271 146 5 chr6 144257353 144257545 -45022009 - MIR SINE MIR -11 251 33 1015 48 0 0 chr6 144257601 144257727 -45021827 + AluY SINE Alu 174 299 -12 215 219 0 0 chr6 144258188 144258229 -45021325 + (CACTC)n Simple_repeat Simple_repeat 5 45 0 223 348 39 62 chr6 144258967 144259145 -45020409 + MIR3 SINE MIR 4 177 -31 309 89 0 0 chr6 144259229 144259274 -45020280 + (T)n Simple_repeat Simple_repeat 1 45 0 2386 61 0 3 chr6 144259436 144259733 -45019821 + AluY SINE Alu 1 296 -15 451 172 30 127 chr6 144260917 144261051 -45018503 - MER5B DNA MER1_type 0 178 58 313 318 171 8 chr6 144261764 144261893 -45017661 - L2 LINE L2 0 3272 3123 1402 219 93 26 chr6 144262076 144262537 -45017017 - MLT1D LTR MaLR 0 505 14 2272 121 0 0 chr6 144263394 144263701 -45015853 - AluSg SINE Alu -3 307 1 291 343 37 0 chr6 144264985 144265119 -45014435 - L2 LINE L2 -10 3303 3165 2560 68 0 0 chr6 144265385 144265696 -45013858 - AluY SINE Alu 0 311 1 723 235 33 88 chr6 144267372 144267550 -45012004 + MIR SINE MIR 6 165 -97 2098 133 0 3 chr6 144267550 144267844 -45011710 + AluSx SINE Alu 1 293 -19 723 235 33 88 chr6 144267844 144267937 -45011617 + MIR SINE MIR 165 262 0 1598 125 24 108 chr6 144269114 144269449 -45010105 - AluYb8 SINE Alu -11 307 1 357 234 45 27 chr6 144270178 144270289 -45009265 - MIR SINE MIR -138 124 12 2213 112 3 0 chr6 144270836 144271130 -45008424 + AluSq SINE Alu 1 295 -18 1836 153 4 0 chr6 144271617 144271891 -45007663 - AluSx SINE Alu -10 302 28 254 29 29 0 chr6 144272450 144272485 -45007069 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr6 144272920 144272948 -45006606 + AT_rich Low_complexity Low_complexity 1 28 0 310 266 266 12 chr6 144276023 144276192 -45003362 + MIR SINE MIR 41 252 -10 754 218 89 0 chr6 144276578 144276757 -45002797 + MIR SINE MIR 6 200 -62 262 225 0 99 chr6 144277475 144277586 -45001968 - MER103 DNA DNA -8 158 59 626 255 94 16 chr6 144279206 144279462 -45000092 + MLT1H1 LTR MaLR 17 258 -297 280 220 23 0 chr6 144279614 144279697 -44999857 + MLT1G1 LTR MaLR 459 594 -1 21 0 0 0 chr6 144280584 144280605 -44998949 + AT_rich Low_complexity Low_complexity 1 21 0 1817 102 46 69 chr6 144280859 144281017 -44998537 - AluSg SINE Alu -12 298 149 2254 107 10 0 chr6 144281017 144281317 -44998237 - AluSq SINE Alu -10 303 1 1817 102 46 69 chr6 144281317 144281463 -44998091 - AluSg SINE Alu -161 149 1 21 0 0 0 chr6 144282471 144282492 -44997062 + AT_rich Low_complexity Low_complexity 1 21 0 776 283 39 26 chr6 144282992 144283222 -44996332 - MIR SINE MIR -21 241 9 218 243 46 138 chr6 144283240 144283458 -44996096 - L2 LINE L2 0 3313 3116 2382 104 0 0 chr6 144283815 144284122 -44995432 + AluSg SINE Alu 1 307 -3 2278 100 7 0 chr6 144285043 144285352 -44994202 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr6 144286228 144286250 -44993304 + AT_rich Low_complexity Low_complexity 1 22 0 2062 139 0 0 chr6 144286488 144286797 -44992757 + AluSx SINE Alu 1 309 -3 625 289 190 34 chr6 144286829 144287355 -44992199 + L2 LINE L2 2369 2976 -338 204 267 89 59 chr6 144287405 144287540 -44992014 + L2 LINE L2 3175 3313 0 433 304 59 68 chr6 144288055 144288265 -44991289 - MIR SINE MIR -21 241 7 2351 99 3 0 chr6 144288930 144289233 -44990321 + AluSx SINE Alu 1 304 -8 2108 115 3 23 chr6 144289270 144289575 -44989979 + AluSp SINE Alu 1 299 -14 1315 166 6 113 chr6 144289783 144290128 -44989426 - AluJo SINE Alu 0 311 1 209 202 111 40 chr6 144290858 144290957 -44988597 + MIR3 SINE MIR 103 208 0 575 235 22 116 chr6 144293185 144293453 -44986101 - MIR SINE MIR -12 250 8 1838 167 7 7 chr6 144293554 144293853 -44985701 - AluJo SINE Alu -13 299 1 2456 64 7 0 chr6 144294580 144294876 -44984678 - AluSp SINE Alu -15 298 1 215 317 20 30 chr6 144295184 144295285 -44984269 + CT-rich Low_complexity Low_complexity 5 104 0 2189 71 0 14 chr6 144295834 144296114 -44983440 + AluSx SINE Alu 37 312 0 237 83 0 0 chr6 144296117 144296153 -44983401 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 303 323 31 8 chr6 144297069 144297196 -44982358 - L3 LINE CR1 -194 1383 1254 431 286 219 19 chr6 144297354 144297564 -44981990 - MIR SINE MIR 0 262 11 266 286 0 24 chr6 144297934 144298018 -44981536 - MER69A DNA AcHobo -91 86 5 2419 80 3 6 chr6 144298419 144298731 -44980823 - AluSx SINE Alu -1 311 1 1358 183 26 67 chr6 144299746 144300058 -44979496 - AluJo SINE Alu -2 300 2 29 0 0 0 chr6 144300147 144300176 -44979378 + AT_rich Low_complexity Low_complexity 1 29 0 936 144 0 0 chr6 144300176 144300301 -44979253 + AluJ SINE Alu 1 125 -187 278 88 119 0 chr6 144300301 144300461 -44979093 + (TA)n Simple_repeat Simple_repeat 2 180 0 489 68 115 2 chr6 144300473 144300945 -44978609 + (TA)n Simple_repeat Simple_repeat 1 525 0 487 106 0 0 chr6 144300948 144301014 -44978540 + AluJ SINE Alu 65 130 -182 231 78 59 0 chr6 144301014 144301065 -44978489 + (TA)n Simple_repeat Simple_repeat 1 54 0 949 176 7 0 chr6 144301068 144301221 -44978333 + AluJ SINE Alu 134 287 -25 305 173 0 0 chr6 144301242 144301294 -44978260 + L1MC4 LINE L1 6652 6703 -1339 2663 36 0 10 chr6 144302622 144302931 -44976623 - AluY SINE Alu -5 306 1 2095 104 37 0 chr6 144304881 144305059 -44974495 - AluY SINE Alu -3 308 113 187 29 86 0 chr6 144305059 144305094 -44974460 + T-rich Low_complexity Low_complexity 2 39 0 2095 104 37 0 chr6 144305094 144305212 -44974342 - AluY SINE Alu -198 113 1 2506 87 0 0 chr6 144305692 144306001 -44973553 - AluSg SINE Alu -1 309 1 205 297 54 14 chr6 144306776 144306850 -44972704 + MIR SINE MIR 118 194 -68 192 327 12 109 chr6 144306935 144307100 -44972454 - MIR SINE MIR -113 149 1 318 221 37 105 chr6 144307141 144307331 -44972223 - MER104 DNA Tc2 -3 177 1 265 245 21 85 chr6 144308399 144308493 -44971061 - L2 LINE L2 -1 3271 3184 365 284 71 65 chr6 144308622 144308777 -44970777 - MIR3 SINE MIR -49 159 4 2511 70 0 6 chr6 144311134 144311447 -44968107 + AluY SINE Alu 1 311 0 336 320 122 12 chr6 144311878 144312050 -44967504 + MIR3 SINE MIR 16 206 -2 393 219 73 24 chr6 144312076 144312199 -44967355 - MIR SINE MIR -12 250 122 2340 86 0 13 chr6 144312199 144312502 -44967052 + AluSc SINE Alu 1 299 -10 212 286 26 52 chr6 144313155 144313232 -44966322 - MIR SINE MIR -6 256 182 590 254 124 16 chr6 144313959 144314144 -44965410 - MIR SINE MIR -18 244 40 186 333 63 56 chr6 144314212 144314338 -44965216 - MIR SINE MIR -61 147 21 26 64 0 0 chr6 144315265 144315312 -44964242 + AT_rich Low_complexity Low_complexity 1 47 0 197 307 146 29 chr6 144315388 144315525 -44964029 + L3 LINE CR1 1094 1246 -331 * 683 264 60 0 chr6 144315516 144315698 -44963856 - MIR SINE MIR 0 262 70 311 349 82 0 chr6 144315818 144315964 -44963590 + MIR3 SINE MIR 45 202 -6 218 302 125 0 chr6 144315959 144316055 -44963499 + L3 LINE CR1 1250 1357 -220 * 2428 89 0 0 chr6 144317195 144317499 -44962055 + AluSx SINE Alu 1 304 -8 1134 247 36 64 chr6 144317862 144318095 -44961459 - L1ME3A LINE L1 -222 5948 5710 2223 122 0 0 chr6 144318095 144318389 -44961165 - AluSq SINE Alu -19 294 1 1134 247 36 64 chr6 144318389 144318653 -44960901 - L1ME3A LINE L1 -460 5710 5465 230 111 0 0 chr6 144318654 144318690 -44960864 + MLT2A2 LTR ERVL 1 36 -417 * 385 163 0 25 chr6 144318661 144318741 -44960813 + MLT2A1 LTR ERVL 366 443 -1 446 284 92 0 chr6 144318772 144318990 -44960564 - L1ME3A LINE L1 -2196 3950 3713 1410 233 83 29 chr6 144319036 144319491 -44960063 + MLT1D LTR MaLR 21 500 -5 796 286 112 36 chr6 144319540 144320655 -44958899 - L1ME3A LINE L1 -2457 3689 2490 1311 218 81 28 chr6 144320795 144321152 -44958402 - Charlie4a DNA MER1_type -1453 508 120 1582 208 17 3 chr6 144321152 144321450 -44958104 - AluJb SINE Alu -10 302 1 1311 218 81 28 chr6 144321450 144321550 -44958004 - Charlie4a DNA MER1_type -1841 120 27 843 164 0 0 chr6 144321650 144321778 -44957776 - AluJ SINE Alu -14 298 171 744 174 0 0 chr6 144321779 144321894 -44957660 - AluJ SINE Alu -197 115 1 21 57 0 0 chr6 144322002 144322037 -44957517 + AT_rich Low_complexity Low_complexity 1 35 0 1077 210 106 52 chr6 144322460 144322884 -44956670 + L1ME2 LINE L1 5709 6155 -9 1601 179 46 23 chr6 144322911 144323213 -44956341 + AluJb SINE Alu 1 309 -3 245 263 70 0 chr6 144323229 144323286 -44956268 - L2 LINE L2 -26 3287 3227 673 137 0 60 chr6 144323674 144323791 -44955763 + FLAM_C SINE Alu 20 129 -14 245 208 114 67 chr6 144324155 144324304 -44955250 - MER103 DNA DNA -1 165 10 2361 109 3 0 chr6 144325090 144325401 -44954153 + AluSx SINE Alu 1 312 0 326 141 39 0 chr6 144325403 144325481 -44954073 + L1MB4 LINE L1 6100 6180 0 586 39 39 0 chr6 144327373 144327450 -44952104 + MADE1 DNA Mariner 1 80 0 2327 102 0 10 chr6 144328216 144328529 -44951025 + AluSx SINE Alu 1 310 -2 907 136 0 0 chr6 144329682 144329807 -44949747 + FLAM_C SINE Alu 1 125 -18 695 0 0 0 chr6 144330063 144330140 -44949414 + MADE1 DNA Mariner 1 77 -3 231 352 65 28 chr6 144330153 144330261 -44949293 - MIR SINE MIR -124 138 27 234 0 0 0 chr6 144330382 144330408 -44949146 + (A)n Simple_repeat Simple_repeat 1 26 0 409 326 11 38 chr6 144331239 144331423 -44948131 + MIR3 SINE MIR 3 181 -27 394 239 85 45 chr6 144332091 144332260 -44947294 - MIR3 SINE MIR -8 200 29 514 292 56 6 chr6 144332913 144333091 -44946463 + MIR SINE MIR 63 249 -13 23 0 0 0 chr6 144333228 144333251 -44946303 + AT_rich Low_complexity Low_complexity 1 23 0 1554 160 56 7 chr6 144333267 144333536 -44946018 - AluJo SINE Alu -30 282 1 485 332 90 14 chr6 144335057 144335280 -44944274 + MIR SINE MIR 2 241 -21 1309 140 30 131 chr6 144335341 144335677 -44943877 + AluJo SINE Alu 1 302 -10 388 264 88 64 chr6 144335845 144336095 -44943459 - MIR SINE MIR 0 262 7 207 215 108 15 chr6 144336160 144336225 -44943329 + MIR SINE MIR 77 147 -115 1945 170 40 6 chr6 144336356 144336709 -44942845 - MLT1A1 LTR MaLR 0 365 1 22 35 0 0 chr6 144336953 144336982 -44942572 + AT_rich Low_complexity Low_complexity 1 29 0 261 275 71 66 chr6 144337447 144337517 -44942037 + L2 LINE L2 3097 3165 -148 3663 139 48 25 chr6 144337517 144338248 -44941306 - L1MA8 LINE L1 -5 6286 5539 261 275 71 66 chr6 144338248 144338359 -44941195 + L2 LINE L2 3165 3279 -34 201 320 13 40 chr6 144338346 144338421 -44941133 + L2 LINE L2 3200 3272 0 * 448 286 9 9 chr6 144339523 144339635 -44939919 - MER5A DNA MER1_type -26 163 52 180 0 0 0 chr6 144339784 144339804 -44939750 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 358 206 0 0 chr6 144339865 144339928 -44939626 - MER45 DNA AcHobo 0 1581 1519 2210 125 0 7 chr6 144339932 144340235 -44939319 - AluSx SINE Alu -9 303 3 447 158 0 0 chr6 144340269 144340345 -44939209 - MER45 DNA AcHobo -57 121 46 217 306 129 48 chr6 144342027 144342174 -44937380 + MER5A DNA MER1_type 31 189 0 523 207 171 24 chr6 144342183 144342347 -44937207 + MER5A DNA MER1_type 2 189 0 883 173 146 0 chr6 144342570 144342755 -44936799 - MER58A DNA MER1_type 0 224 13 252 282 82 81 chr6 144343145 144343386 -44936168 - L2 LINE L2 -280 3033 2797 2029 146 32 8 chr6 144343548 144343919 -44935635 - MER65A LTR ERV1 -1 444 65 204 333 116 45 chr6 144343935 144344202 -44935352 - L2 LINE L2 -704 2610 2325 266 219 109 47 chr6 144345103 144345231 -44934323 + L1ME4a LINE L1 5986 6121 0 313 279 213 29 chr6 144345265 144345537 -44934017 + L2 LINE L2 2560 2881 -433 237 65 0 0 chr6 144346294 144346325 -44933229 + (ATG)n Simple_repeat Simple_repeat 2 32 0 1565 181 22 4 chr6 144346327 144346604 -44932950 - AluJo SINE Alu -26 286 5 1692 160 0 62 chr6 144351208 144351514 -44928040 - AluJb SINE Alu -13 299 13 251 267 160 38 chr6 144352461 144352592 -44926962 - MIR SINE MIR -111 151 5 1869 191 111 55 chr6 144352676 144353013 -44926541 + LTR29 LTR ERV1 4 389 -233 1785 104 101 50 chr6 144353013 144353370 -44926184 + THE1C LTR MaLR 1 375 0 1869 191 111 55 chr6 144353370 144353618 -44925936 + LTR29 LTR ERV1 389 622 0 4553 132 19 18 chr6 144353918 144354639 -44924915 + MER72 LTR ERV1 1 722 0 287 263 61 0 chr6 144354791 144354890 -44924664 + MLT1L LTR MaLR 176 280 -335 512 320 17 0 chr6 144355681 144355856 -44923698 - LTR16B LTR ERVL -199 265 88 209 370 50 10 chr6 144355984 144356084 -44923470 + L2 LINE L2 3102 3205 -67 336 148 35 69 chr6 144356781 144356911 -44922643 - LTR41 LTR ERVL 0 795 650 700 151 133 24 chr6 144357594 144357760 -44921794 - LTR41 LTR ERVL -589 184 1 191 313 170 45 chr6 144357809 144357921 -44921633 + L2 LINE L2 3179 3304 -9 1563 143 105 68 chr6 144358537 144358697 -44920857 - MLT2D LTR ERVL -50 364 211 1838 156 10 10 chr6 144358697 144358999 -44920555 - AluJo SINE Alu -10 302 1 1563 143 105 68 chr6 144358999 144359189 -44920365 - MLT2D LTR ERVL -203 211 1 2049 146 125 10 chr6 144359279 144359663 -44919891 - MSTA LTR MaLR 0 428 1 327 326 32 37 chr6 144359663 144359850 -44919704 + L1M4 LINE L1 3726 3911 -2235 228 309 83 22 chr6 144359862 144360043 -44919511 + L1ME LINE L1 270 461 -5609 225 272 93 19 chr6 144360219 144360381 -44919173 + L1ME LINE L1 541 714 -5366 879 266 25 19 chr6 144360384 144360700 -44918854 + L1ME1 LINE L1 5798 6115 -51 938 169 32 0 chr6 144360703 144360857 -44918697 + FRAM SINE Alu 1 158 -18 30 27 0 0 chr6 144360910 144360947 -44918607 + AT_rich Low_complexity Low_complexity 1 37 0 328 297 26 2 chr6 144361175 144361383 -44918171 - L1MEc LINE L1 -875 1701 1543 939 291 107 57 chr6 144361493 144362644 -44916910 - L1MEc LINE L1 -4900 1305 97 23 0 0 0 chr6 144362664 144362687 -44916867 + AT_rich Low_complexity Low_complexity 1 23 0 246 339 6 23 chr6 144363062 144363236 -44916318 + L1ME LINE L1 5469 5639 -482 951 125 99 1 chr6 144363664 144363863 -44915691 - L1MA8 LINE L1 -1 6299 6066 257 379 70 5 chr6 144363875 144364089 -44915465 + L1MEc LINE L1 130 357 -6039 535 70 0 0 chr6 144364515 144364586 -44914968 + AluSp/q SINE Alu 228 298 -15 1184 261 63 24 chr6 144364587 144365170 -44914384 + L1MEc LINE L1 670 1275 -5121 590 170 30 0 chr6 144365483 144365583 -44913971 + AluJo SINE Alu 34 136 -176 1705 124 14 0 chr6 144365829 144366104 -44913450 - L1MA4 LINE L1 -12 6288 6010 252 0 0 0 chr6 144366733 144366761 -44912793 + (A)n Simple_repeat Simple_repeat 1 28 0 255 333 114 9 chr6 144367425 144367539 -44912015 - L2 LINE L2 -13 3259 3134 250 354 43 64 chr6 144367602 144367882 -44911672 - L2 LINE L2 -337 2977 2704 1516 284 107 21 chr6 144367921 144368586 -44910968 + HAL1 LINE L1 2 723 -1784 1267 144 111 123 chr6 144368601 144369081 -44910473 + Zaphod DNA AcHobo 698 1170 -2861 1760 147 25 14 chr6 144369081 144369367 -44910187 + AluJo SINE Alu 1 289 -23 1267 144 111 123 chr6 144369367 144369526 -44910028 + Zaphod DNA AcHobo 1170 1329 -2702 552 209 216 26 chr6 144369528 144369664 -44909890 + Zaphod DNA AcHobo 3296 3405 -626 1879 148 13 7 chr6 144369664 144369962 -44909592 - AluJb SINE Alu -12 300 1 552 209 216 26 chr6 144369962 144370131 -44909423 + Zaphod DNA AcHobo 3405 3659 -372 208 318 0 0 chr6 144370835 144370898 -44908656 + T-rich Low_complexity Low_complexity 3 65 0 22 0 0 0 chr6 144370952 144370974 -44908580 + AT_rich Low_complexity Low_complexity 1 22 0 534 317 58 18 chr6 144371168 144371392 -44908162 + MIR SINE MIR 6 238 -24 2264 124 14 30 chr6 144371486 144371856 -44907698 + THE1B LTR MaLR 1 364 0 294 288 46 14 chr6 144372041 144372305 -44907249 - L1MC4a LINE L1 -1925 5883 5546 796 151 16 0 chr6 144372565 144372691 -44906863 + MLT1D LTR MaLR 371 498 -7 1846 151 25 0 chr6 144372785 144373070 -44906484 + AluSx SINE Alu 1 292 -20 1933 203 12 52 chr6 144373138 144373620 -44905934 + L1MA10 LINE L1 5834 6296 -38 1021 117 14 0 chr6 144373620 144373765 -44905789 + FRAM SINE Alu 20 166 -10 1712 180 6 32 chr6 144374007 144374318 -44905236 - AluJo SINE Alu -9 303 1 259 324 158 50 chr6 144374820 144375496 -44904058 - L2 LINE L2 -318 2954 2128 1700 171 18 0 chr6 144375496 144375771 -44903783 + AluJb SINE Alu 7 286 -26 259 324 158 50 chr6 144375771 144376123 -44903431 - L2 LINE L2 -1144 2128 1816 184 352 9 9 chr6 144376126 144376231 -44903323 - L2 LINE L2 -1733 1581 1477 1355 160 8 21 chr6 144376323 144376561 -44902993 - AluSg/x SINE Alu -7 303 69 347 306 27 77 chr6 144376599 144376821 -44902733 + L3 LINE CR1 1355 1565 -12 294 305 0 0 chr6 144377118 144377177 -44902377 - L2 LINE L2 -21 3251 3193 * 454 271 8 17 chr6 144377174 144377292 -44902262 + L2 LINE L2 3194 3310 -3 261 206 159 65 chr6 144377974 144378081 -44901473 + MIR SINE MIR 19 135 -73 3717 193 87 98 chr6 144378105 144378719 -44900835 - L1MC4 LINE L1 -4 8038 7419 1855 158 3 0 chr6 144378719 144379011 -44900543 + AluY SINE Alu 1 293 -18 3717 193 87 98 chr6 144379011 144379089 -44900465 - L1MC4 LINE L1 -623 7419 7342 2124 130 29 35 chr6 144379089 144379466 -44900088 - THE1C LTR MaLR 0 375 1 3717 193 87 98 chr6 144379466 144380203 -44899351 - L1MC4 LINE L1 -700 7342 6624 306 243 29 6 chr6 144380225 144380398 -44899156 + (TA)n Simple_repeat Simple_repeat 1 177 0 189 195 0 0 chr6 144380411 144380452 -44899102 + (TA)n Simple_repeat Simple_repeat 2 42 0 592 244 96 51 chr6 144380535 144381007 -44898547 - L1MC3 LINE L1 -1168 6617 6168 1687 175 85 66 chr6 144381007 144381464 -44898090 + MLT1C LTR MaLR 1 466 -1 592 244 96 51 chr6 144381464 144382285 -44897269 - L1MC3 LINE L1 -1617 6168 5260 228 67 0 0 chr6 144382508 144382538 -44897016 + (T)n Simple_repeat Simple_repeat 1 30 0 242 313 52 22 chr6 144382543 144382811 -44896743 - L1MC3 LINE L1 -1136 5010 4735 458 258 23 28 chr6 144382960 144383177 -44896377 - L1MC3 LINE L1 -1551 4595 4380 2168 133 6 37 chr6 144384575 144384927 -44894627 + THE1B LTR MaLR 1 341 -23 11645 96 6 2 chr6 144384929 144386502 -44893052 + THE1B-int LTR MaLR 1 1579 -1 2416 124 5 30 chr6 144386511 144386883 -44892671 + THE1B LTR MaLR 2 364 0 25 51 0 0 chr6 144387099 144387138 -44892416 + AT_rich Low_complexity Low_complexity 1 39 0 1090 295 78 22 chr6 144387142 144387833 -44891721 - L1MC3 LINE L1 -1822 4324 3595 206 278 56 22 chr6 144387888 144387978 -44891576 + MIR SINE MIR 120 212 -50 2212 149 5 19 chr6 144388297 144388666 -44890888 + THE1B LTR MaLR 1 364 0 183 217 87 0 chr6 144388727 144388773 -44890781 + L2 LINE L2 3250 3299 -14 29250 69 10 2 chr6 144389373 144394074 -44885480 - L1PA6 LINE L1 -8 6146 1412 22 35 0 0 chr6 144394416 144394445 -44885109 + AT_rich Low_complexity Low_complexity 1 29 0 194 157 0 98 chr6 144394498 144394549 -44885005 - L2 LINE L2 0 3313 3268 1508 166 23 8 chr6 144395200 144395459 -44884095 + AluJo SINE Alu 31 293 -19 372 248 158 32 chr6 144395753 144396111 -44883443 - L1MC4a LINE L1 -272 5890 5484 269 311 34 59 chr6 144396478 144396597 -44882957 + L1MC/D LINE L1 5494 5609 -2199 235 286 13 62 chr6 144396672 144396899 -44882655 - L1MC4a LINE L1 -755 5391 5176 2079 90 7 4 chr6 144396981 144397285 -44882269 - AluSc SINE Alu 0 305 1 598 291 106 3 chr6 144397424 144397706 -44881848 - L1MC4a LINE L1 -1318 4828 4518 699 336 124 39 chr6 144397750 144398676 -44880878 - L1MC4a LINE L1 -1696 4450 3446 451 267 88 40 chr6 144399159 144399593 -44879961 - L1MEd LINE L1 -1046 1444 894 24 41 0 20 chr6 144401576 144401606 -44877948 + AT_rich Low_complexity Low_complexity 1 31 -17 2118 128 0 0 chr6 144401606 144401894 -44877660 - AluSx SINE Alu -24 288 1 24 41 0 20 chr6 144401894 144401912 -44877642 + AT_rich Low_complexity Low_complexity 31 48 0 185 0 0 39 chr6 144402528 144402554 -44877000 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 849 138 8 0 chr6 144402554 144402684 -44876870 - MER3 DNA MER1_type -78 131 1 434 259 37 0 chr6 144403424 144403532 -44876022 - L2 LINE L2 -6 3307 3196 301 254 0 15 chr6 144403867 144403934 -44875620 + L2 LINE L2 3248 3313 0 572 299 124 18 chr6 144404167 144404611 -44874943 + L1ME4a LINE L1 5476 5966 -155 396 277 223 0 chr6 144407185 144407333 -44872221 + MER5A DNA MER1_type 9 189 0 959 183 0 0 chr6 144407598 144407751 -44871803 + FRAM SINE Alu 1 150 -26 2261 110 3 0 chr6 144409008 144409308 -44870246 - AluSx SINE Alu -11 301 1 216 156 52 10 chr6 144410083 144410179 -44869375 + (TA)n Simple_repeat Simple_repeat 1 100 0 233 165 82 0 chr6 144410288 144410373 -44869181 + (TA)n Simple_repeat Simple_repeat 2 93 0 254 120 160 20 chr6 144410437 144410487 -44869067 - L2 LINE L2 -11 3302 3246 205 289 165 10 chr6 144411052 144411149 -44868405 + MIR SINE MIR 151 262 0 1075 138 0 0 chr6 144411409 144411569 -44867985 - FRAM SINE Alu -6 160 1 203 286 0 0 chr6 144412001 144412050 -44867504 + MER5A DNA MER1_type 4 52 -137 2147 115 3 10 chr6 144413049 144413362 -44866192 - AluSx SINE Alu -1 311 1 2262 102 3 3 chr6 144414417 144414720 -44864834 - AluSx SINE Alu -8 304 2 358 310 182 11 chr6 144414941 144415128 -44864426 - MIR SINE MIR -12 250 32 1136 153 47 8 chr6 144415350 144415585 -44863969 + L1MD3 LINE L1 7752 7995 0 1584 188 3 33 chr6 144417439 144417743 -44861811 + AluJo SINE Alu 3 297 -15 33180 90 9 8 chr6 144417760 144423905 -44855649 + L1PA6 LINE L1 11 6153 -1 181 355 19 19 chr6 144423906 144424013 -44855541 + MIR SINE MIR 79 185 -77 31 0 0 0 chr6 144425766 144425797 -44853757 + AT_rich Low_complexity Low_complexity 1 31 0 225 254 92 31 chr6 144426341 144426471 -44853083 + L1ME LINE L1 5802 5939 -231 505 271 121 12 chr6 144426681 144426847 -44852707 + MIR3 SINE MIR 20 203 -5 290 314 65 17 chr6 144427413 144427571 -44851983 - MIR SINE MIR -58 204 34 208 236 0 18 chr6 144427605 144427660 -44851894 + MIR3 SINE MIR 150 203 -5 814 189 0 0 chr6 144427820 144427952 -44851602 + FLAM_C SINE Alu 1 132 -11 21 0 0 0 chr6 144428707 144428728 -44850826 + AT_rich Low_complexity Low_complexity 1 21 0 286 120 0 12 chr6 144428988 144429039 -44850515 - MADE1 DNA Mariner -36 44 2 246 346 0 8 chr6 144429210 144429343 -44850211 + L1M4 LINE L1 4883 5014 -1132 356 289 67 0 chr6 144429350 144429530 -44850024 + L1M4 LINE L1 5209 5400 -746 2271 102 3 6 chr6 144430085 144430399 -44849155 - AluSp SINE Alu 0 313 1 427 261 36 24 chr6 144430597 144430762 -44848792 - MLT1L LTR MaLR -324 291 125 23 0 0 0 chr6 144431415 144431438 -44848116 + AT_rich Low_complexity Low_complexity 1 23 0 33 56 0 0 chr6 144431495 144431549 -44848005 + AT_rich Low_complexity Low_complexity 1 54 0 805 238 11 0 chr6 144431889 144432074 -44847480 - MER5A DNA MER1_type -2 187 1 417 272 84 0 chr6 144432304 144432451 -44847103 - MIR SINE MIR -62 200 37 1198 195 65 10 chr6 144432914 144433221 -44846333 - MER33 DNA MER1_type 0 324 1 323 274 66 85 chr6 144433295 144433564 -44845990 - MIR SINE MIR -14 248 1 2057 137 0 3 chr6 144433594 144433893 -44845661 - AluSx SINE Alu -14 298 1 399 295 0 18 chr6 144433899 144434011 -44845543 - MIR3 SINE MIR -45 163 54 953 191 68 30 chr6 144434193 144434529 -44845025 + L1MC5 LINE L1 7553 7901 -60 30 0 0 0 chr6 144434543 144434573 -44844981 + AT_rich Low_complexity Low_complexity 1 30 0 252 319 0 11 chr6 144434679 144434773 -44844781 - MIR SINE MIR -30 232 140 364 355 112 5 chr6 144435495 144435692 -44843862 + L2 LINE L2 2843 3060 -212 279 317 10 30 chr6 144436459 144436560 -44842994 + L2 LINE L2 3209 3307 -6 314 247 129 0 chr6 144436898 144436983 -44842571 - MIR3 SINE MIR -47 161 66 254 208 0 19 chr6 144437045 144437098 -44842456 + Tigger5 DNA MER2_type 1 52 -2271 * 381 222 0 14 chr6 144437069 144437141 -44842413 + Tigger5 DNA MER2_type 2251 2321 -2 192 289 22 0 chr6 144437308 144437353 -44842201 + MER5A DNA MER1_type 122 167 -22 309 268 158 33 chr6 144437792 144437975 -44841579 - L1MC4 LINE L1 -222 7820 7615 1478 229 88 51 chr6 144437979 144438585 -44840969 - L1MC4 LINE L1 -524 7518 6891 405 231 39 0 chr6 144438635 144438739 -44840815 - L1M4 LINE L1 -1313 4833 4726 757 131 20 171 chr6 144438744 144438996 -44840558 + L1MA10 LINE L1 6119 6332 -2 315 299 56 56 chr6 144438997 144439556 -44839998 - L1M4 LINE L1 -1415 4731 4188 252 182 0 0 chr6 144439628 144439683 -44839871 - L1MC4 LINE L1 -1340 6702 6648 2107 119 0 14 chr6 144439689 144439983 -44839571 - AluSx SINE Alu -22 290 1 615 293 35 62 chr6 144439990 144440122 -44839432 - L1M4 LINE L1 -2028 4118 3984 435 119 0 0 chr6 144440122 144440189 -44839365 + (TA)n Simple_repeat Simple_repeat 1 67 0 615 293 35 62 chr6 144440189 144440673 -44838881 - L1M4 LINE L1 -2162 3984 3515 2152 119 3 3 chr6 144441123 144441417 -44838137 - AluSx SINE Alu -18 294 1 225 288 72 68 chr6 144441423 144441573 -44837981 + MIR SINE MIR 6 156 -52 319 143 0 0 chr6 144442090 144442139 -44837415 + L2 LINE L2 3216 3264 -8 408 55 0 0 chr6 144442425 144442480 -44837074 + (TG)n Simple_repeat Simple_repeat 2 56 0 6606 113 17 17 chr6 144444234 144445373 -44834181 - L1MA3 LINE L1 0 6305 5169 2039 100 17 7 chr6 144445834 144446123 -44833431 + AluSq SINE Alu 1 292 -21 218 152 0 22 chr6 144446616 144446662 -44832892 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 565 301 39 0 chr6 144446940 144447143 -44832411 - MER46C DNA MER2_type 0 338 128 1073 214 97 44 chr6 144447341 144447683 -44831871 + MER57A LTR ERV1 42 401 -2 553 208 25 0 chr6 144449179 144449299 -44830255 - MER5A DNA MER1_type -8 181 59 204 40 0 0 chr6 144450037 144450062 -44829492 + (T)n Simple_repeat Simple_repeat 1 25 0 525 32 0 0 chr6 144450586 144450649 -44828905 + (TG)n Simple_repeat Simple_repeat 2 64 0 341 333 20 47 chr6 144452996 144453146 -44826408 + L2 LINE L2 3102 3247 -25 285 209 0 0 chr6 144453146 144453213 -44826341 + (CATA)n Simple_repeat Simple_repeat 1 67 0 960 285 36 3 chr6 144453440 144453770 -44825784 - Tigger8 DNA MER2_type -173 493 153 257 307 29 50 chr6 144453772 144453912 -44825642 + L2 LINE L2 2487 2623 -691 543 107 0 156 chr6 144453913 144454035 -44825519 - MLT1B LTR MaLR -167 223 121 342 275 108 77 chr6 144454035 144454446 -44825108 + L2 LINE L2 2638 3055 -217 1105 280 137 22 chr6 144455315 144455762 -44823792 - MLT1F LTR MaLR -37 505 8 27 0 0 0 chr6 144458981 144459008 -44820546 + AT_rich Low_complexity Low_complexity 1 27 0 429 231 117 83 chr6 144459037 144459362 -44820192 - L1ME4a LINE L1 -264 5857 5522 25038 137 27 17 chr6 144459642 144461955 -44817599 - L1PA8A LINE L1 -2 6444 4155 1865 113 0 0 chr6 144461955 144462211 -44817343 - AluSq SINE Alu 0 313 58 25038 137 27 17 chr6 144462211 144465302 -44814252 - L1PA8A LINE L1 -2291 4155 141 237 350 52 0 chr6 144465844 144465941 -44813613 + MIR SINE MIR 43 144 -64 674 294 92 18 chr6 144466006 144466234 -44813320 + MIR SINE MIR 12 256 -6 28 48 0 0 chr6 144466808 144466850 -44812704 + AT_rich Low_complexity Low_complexity 1 42 0 6817 182 76 55 chr6 144468229 144469917 -44809637 + MER52A LTR ERV1 27 1749 -6 2317 80 7 0 chr6 144470182 144470471 -44809083 - AluSq SINE Alu -16 297 7 531 320 103 41 chr6 144470483 144470967 -44808587 - L1M4 LINE L1 -3104 3042 2529 1760 118 0 0 chr6 144471241 144471478 -44808076 - AluSx SINE Alu -75 237 1 319 176 44 88 chr6 144471491 144471512 -44808042 - MER46A DNA MER2_type -75 161 145 919 112 22 0 chr6 144471512 144471646 -44807908 + Tigger4(Zombi) DNA MER2_type 1 137 -2594 5694 104 21 12 chr6 144471649 144472502 -44807052 + Tigger4(Zombi) DNA MER2_type 1871 2731 0 361 258 233 6 chr6 144472999 144473162 -44806392 - L1MEc LINE L1 -6162 234 35 907 295 137 22 chr6 144473780 144474100 -44805454 - L2 LINE L2 0 3313 2926 2252 120 3 0 chr6 144474100 144474409 -44805145 + AluSx SINE Alu 1 310 -2 907 295 137 22 chr6 144474409 144474535 -44805019 - L2 LINE L2 -387 2926 2816 474 245 180 14 chr6 144474570 144474709 -44804845 - MER5B DNA MER1_type -8 170 9 189 266 28 64 chr6 144474805 144474914 -44804640 - L2 LINE L2 -165 3148 3044 1718 347 46 0 chr6 144474937 144475375 -44804179 + L1MB3 LINE L1 5713 6170 -13 21 0 0 0 chr6 144475384 144475405 -44804149 + AT_rich Low_complexity Low_complexity 1 21 0 385 155 12 24 chr6 144475409 144475493 -44804061 + L1MC1 LINE L1 6251 6333 0 255 337 61 10 chr6 144478384 144478482 -44801072 + L2 LINE L2 3150 3252 -20 2332 100 0 3 chr6 144478641 144478951 -44800603 + AluY SINE Alu 3 311 0 390 288 7 59 chr6 144479364 144479517 -44800037 - L2 LINE L2 0 3313 3169 968 233 188 14 chr6 144479517 144479933 -44799621 + HsTC2 DNA Tc2 1 488 -1410 * 1086 202 63 25 chr6 144479917 144480234 -44799320 + HsTC2 DNA Tc2 1568 1896 -2 2338 287 174 24 chr6 144480255 144481657 -44797897 - L2 LINE L2 -175 3138 1526 1778 228 36 11 chr6 144481701 144482145 -44797409 + LTR40b LTR ERVL 8 462 0 411 371 6 22 chr6 144482151 144482329 -44797225 - L2 LINE L2 -2050 1264 1090 * 422 293 222 21 chr6 144482314 144482648 -44796906 - L2 LINE L2 -2349 965 565 201 241 19 19 chr6 144482765 144482819 -44796735 - MER91A DNA MER1_type -27 169 116 2182 105 3 3 chr6 144482907 144483201 -44796353 - AluSx SINE Alu -18 294 1 450 326 96 82 chr6 144483221 144483586 -44795968 - L2 LINE L2 -2791 523 154 11471 127 25 1 chr6 144483687 144484298 -44795256 + Tigger1 DNA MER2_type 17 612 -1806 207 0 0 0 chr6 144484298 144484321 -44795233 + (TAA)n Simple_repeat Simple_repeat 2 24 0 11471 127 25 1 chr6 144484321 144485564 -44793990 + Tigger1 DNA MER2_type 612 1916 -502 1136 96 0 136 chr6 144485564 144485762 -44793792 + AluSq SINE Alu 1 171 -142 249 210 0 0 chr6 144485895 144485957 -44793597 + CT-rich Low_complexity Low_complexity 3 64 0 1523 164 64 33 chr6 144486320 144486649 -44792905 - MER1B DNA MER1_type 0 339 1 1189 191 26 109 chr6 144486649 144486706 -44792848 - MER58B DNA MER1_type -2099 321 261 1951 213 54 61 chr6 144486706 144487260 -44792294 - MLT2B3 LTR ERVL -4 550 1 1189 191 26 109 chr6 144487260 144487465 -44792089 - MER58B DNA MER1_type -2159 261 93 2041 152 0 0 chr6 144487465 144487784 -44791770 + AluSx SINE Alu 1 312 0 1189 191 26 109 chr6 144487784 144487870 -44791684 - MER58B DNA MER1_type -2327 93 1 1924 264 86 26 chr6 144488255 144488979 -44790575 + LTR41 LTR ERVL 1 767 -6 263 287 40 18 chr6 144488981 144489153 -44790401 - L1ME LINE L1 -533 5588 5410 2156 205 82 13 chr6 144489470 144490079 -44789475 - L1MC4 LINE L1 -126 7916 7266 307 276 35 55 chr6 144490087 144490344 -44789210 - L1MC4a LINE L1 -1275 6533 6282 1314 267 73 6 chr6 144490461 144490951 -44788603 - L1MC4a LINE L1 -1762 6046 5524 307 362 108 35 chr6 144491416 144491703 -44787851 + L1MEd LINE L1 80 387 -5732 374 299 60 57 chr6 144491756 144492157 -44787397 + L1MEd LINE L1 561 962 -5157 409 295 93 25 chr6 144492249 144492486 -44787068 - L1ME LINE L1 -5434 636 384 1694 120 0 126 chr6 144494199 144494525 -44785029 - AluSg SINE Alu -15 285 1 536 267 83 79 chr6 144494561 144494747 -44784807 - MIR SINE MIR -16 246 57 2417 83 0 16 chr6 144494747 144495061 -44784493 + AluY SINE Alu 1 309 -2 536 267 83 79 chr6 144495061 144495114 -44784440 - MIR SINE MIR -205 57 6 277 205 8 49 chr6 144495178 144495268 -44784286 + MIR SINE MIR 114 198 -64 28 91 0 0 chr6 144496198 144496275 -44783279 + AT_rich Low_complexity Low_complexity 1 77 0 1494 158 85 11 chr6 144496284 144496556 -44782998 - AluJo SINE Alu -17 295 4 718 214 0 0 chr6 144496685 144496816 -44782738 + FRAM SINE Alu 16 146 -30 331 300 12 62 chr6 144496916 144497076 -44782478 - MIR SINE MIR -6 256 105 1768 163 0 7 chr6 144497076 144497365 -44782189 + AluJb SINE Alu 1 287 -25 22 35 0 0 chr6 144499546 144499575 -44779979 + AT_rich Low_complexity Low_complexity 1 29 0 324 0 0 0 chr6 144500384 144500420 -44779134 + (TG)n Simple_repeat Simple_repeat 1 36 0 424 259 106 29 chr6 144501304 144501493 -44778061 + MIR SINE MIR 10 211 -51 2905 171 25 12 chr6 144502042 144502640 -44776914 - L1MA5 LINE L1 -2 6298 5693 424 287 148 40 chr6 144503136 144503569 -44775985 - L1ME LINE L1 -312 5809 5329 389 313 140 40 chr6 144503647 144504168 -44775386 - L1ME LINE L1 -906 5240 4668 258 305 49 22 chr6 144504263 144504489 -44775065 - L1ME LINE L1 -2591 3555 3324 272 376 20 10 chr6 144505486 144505587 -44773967 + L2 LINE L2 3166 3267 -5 222 196 0 0 chr6 144506045 144506091 -44773463 + (TGGG)n Simple_repeat Simple_repeat 3 48 0 2133 161 107 5 chr6 144507221 144507642 -44771912 + MLT2C2 LTR ERVL 1 464 0 622 281 15 40 chr6 144509422 144509621 -44769933 + MIR SINE MIR 52 245 -17 1778 154 17 35 chr6 144509629 144509827 -44769727 - MER44D DNA MER2_type -1882 609 409 2677 105 3 0 chr6 144509827 144510190 -44769364 + THE1B LTR MaLR 1 364 0 1778 154 17 35 chr6 144510190 144510336 -44769218 - MER44D DNA MER2_type -2082 409 1 252 0 0 0 chr6 144510914 144510942 -44768612 + (TG)n Simple_repeat Simple_repeat 2 29 0 25 65 0 0 chr6 144511073 144511119 -44768435 + AT_rich Low_complexity Low_complexity 1 46 0 858 208 53 56 chr6 144511179 144511573 -44767981 + L1MC5 LINE L1 7467 7859 -102 294 73 0 0 chr6 144511713 144511754 -44767800 + (TG)n Simple_repeat Simple_repeat 2 42 0 281 23 0 47 chr6 144511976 144512019 -44767535 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2016 116 3 11 chr6 144512021 144512305 -44767249 - AluSx SINE Alu -30 282 1 264 331 42 18 chr6 144512371 144512537 -44767017 + L1ME4a LINE L1 5410 5579 -542 504 284 81 21 chr6 144512550 144512835 -44766719 + L1ME4a LINE L1 5625 5926 -195 760 221 20 0 chr6 144514132 144514281 -44765273 + FRAM SINE Alu 1 152 -24 22 35 0 0 chr6 144514282 144514311 -44765243 + AT_rich Low_complexity Low_complexity 1 29 0 453 274 72 36 chr6 144514876 144515267 -44764287 - L1M4 LINE L1 -2128 4018 3614 198 0 0 0 chr6 144515402 144515424 -44764130 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 344 229 28 46 chr6 144515463 144515572 -44763982 - MLT1J2 LTR MaLR 0 450 344 1342 276 42 43 chr6 144515747 144516293 -44763261 + L1M4c LINE L1 1526 2071 -4311 216 97 0 0 chr6 144516293 144516324 -44763230 + (TATG)n Simple_repeat Simple_repeat 3 33 0 1342 276 42 43 chr6 144516324 144516600 -44762954 + L1M4c LINE L1 2071 2346 -4036 8080 125 15 21 chr6 144516600 144517907 -44761647 + HSMAR2 DNA Mariner 3 1301 -1 1342 276 42 43 chr6 144517907 144518163 -44761391 + L1M4c LINE L1 2346 2722 -3660 2362 247 49 24 chr6 144518196 144518410 -44761144 + L1ME2 LINE L1 5341 5548 -786 2250 82 3 0 chr6 144518410 144518692 -44760862 + AluSq SINE Alu 3 285 -28 513 0 0 0 chr6 144518692 144518749 -44760805 + (CA)n Simple_repeat Simple_repeat 2 58 0 2362 247 49 24 chr6 144518749 144519342 -44760212 + L1ME2 LINE L1 5547 6330 -4 1277 124 96 5 chr6 144519364 144519573 -44759981 + MER30 DNA MER1_type 3 230 0 192 40 0 0 chr6 144519604 144519629 -44759925 + (T)n Simple_repeat Simple_repeat 1 25 0 273 370 69 17 chr6 144519795 144519968 -44759586 + MIR SINE MIR 31 212 -50 348 221 15 0 chr6 144520210 144520278 -44759276 - L2 LINE L2 -2 3311 3243 288 200 0 0 chr6 144520359 144520424 -44759130 + (CATA)n Simple_repeat Simple_repeat 2 66 0 215 323 90 68 chr6 144520816 144520949 -44758605 - L2 LINE L2 0 3272 3137 594 309 199 30 chr6 144520957 144521684 -44757870 - L2 LINE L2 -934 2380 1531 536 275 127 30 chr6 144521759 144521995 -44757559 + MIR SINE MIR 3 261 -1 344 297 0 40 chr6 144522129 144522277 -44757277 + L1ME LINE L1 5455 5596 -525 2554 34 0 3 chr6 144523120 144523414 -44756140 + AluY SINE Alu 1 293 -18 1384 167 32 16 chr6 144524090 144524341 -44755213 + AluJo SINE Alu 36 290 -22 368 317 67 6 chr6 144524490 144524654 -44754900 - MIR SINE MIR -13 249 76 631 289 28 6 chr6 144524658 144524838 -44754716 - MIR SINE MIR -53 209 26 2229 108 0 3 chr6 144525469 144525756 -44753798 - AluSp SINE Alu -25 288 3 281 318 65 0 chr6 144525759 144525913 -44753641 + L2 LINE L2 1920 2083 -1231 655 242 28 39 chr6 144526347 144526525 -44753029 - MER5B DNA MER1_type 0 178 3 290 299 112 52 chr6 144526538 144526672 -44752882 - MER5A DNA MER1_type -4 185 44 568 326 141 35 chr6 144526828 144527368 -44752186 + L2 LINE L2 2266 2862 -452 331 300 18 9 chr6 144527379 144527489 -44752065 + MER5A DNA MER1_type 74 184 -5 2054 107 22 41 chr6 144527769 144528087 -44751467 - AluSx SINE Alu 0 312 1 590 248 135 63 chr6 144528369 144528748 -44750806 - LTR67 LTR ERVL -1 556 151 438 20 0 0 chr6 144528763 144528814 -44750740 + (TG)n Simple_repeat Simple_repeat 2 52 0 436 219 94 94 chr6 144529879 144530199 -44749355 - L1MC5 LINE L1 -165 7796 7477 5046 183 133 29 chr6 144530214 144530738 -44748816 - Charlie1a DNA MER1_type -1310 1451 983 2305 92 0 13 chr6 144530738 144531043 -44748511 + AluSq SINE Alu 1 301 -12 5046 183 133 29 chr6 144531043 144531832 -44747722 - Charlie1a DNA MER1_type -1778 983 1 1524 214 115 106 chr6 144531836 144532693 -44746861 - L1MC5 LINE L1 -528 7433 6566 254 257 14 14 chr6 144533149 144533219 -44746335 - MIR SINE MIR -74 134 76 27 49 0 0 chr6 144533228 144533269 -44746285 + AT_rich Low_complexity Low_complexity 1 41 0 1789 105 151 0 chr6 144533391 144533649 -44745905 - AluSx SINE Alu -15 297 1 21 95 0 0 chr6 144534272 144534335 -44745219 + AT_rich Low_complexity Low_complexity 1 63 0 1838 243 25 32 chr6 144534404 144534959 -44744595 - L1MC5 LINE L1 -1841 5967 5417 188 344 22 11 chr6 144535199 144535289 -44744265 + MIR SINE MIR 51 141 -67 24 0 0 0 chr6 144535680 144535704 -44743850 + AT_rich Low_complexity Low_complexity 1 24 0 230 293 37 24 chr6 144536502 144536584 -44742970 + L2 LINE L2 2684 2766 -548 22 0 0 0 chr6 144537074 144537096 -44742458 + AT_rich Low_complexity Low_complexity 1 22 0 1535 162 25 11 chr6 144537855 144538174 -44741380 + AluJo SINE Alu 1 323 0 1119 252 0 0 chr6 144538396 144538618 -44740936 - MER58A DNA MER1_type 0 224 3 1112 235 105 66 chr6 144538681 144539184 -44740370 + MLT1H1 LTR MaLR 1 523 -32 1456 205 82 42 chr6 144539449 144539878 -44739676 - LTR55 LTR ERV -102 446 1 2253 84 3 3 chr6 144541485 144541800 -44737754 + AluSx SINE Alu 1 315 0 457 283 48 32 chr6 144542036 144542223 -44737331 - L3 LINE CR1 -113 1464 1275 708 221 161 46 chr6 144542779 144543195 -44736359 - L1MC/D LINE L1 -2027 5781 5318 225 299 90 8 chr6 144543395 144543529 -44736025 - L1P LINE L1 -1098 5048 4904 2085 124 3 3 chr6 144543748 144544054 -44735500 - AluJb SINE Alu -6 306 1 347 321 15 71 chr6 144544376 144544572 -44734982 - L1MC/D LINE L1 -2169 3977 3793 1645 149 20 20 chr6 144544764 144545066 -44734488 - L1MC3 LINE L1 -780 7005 6704 232 391 0 0 chr6 144545522 144545609 -44733945 + L2 LINE L2 3223 3309 -4 299 65 22 0 chr6 144545669 144545715 -44733839 + (TTG)n Simple_repeat Simple_repeat 2 48 0 180 111 0 0 chr6 144546478 144546505 -44733049 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 223 326 10 51 chr6 144546826 144546924 -44732630 - MIR SINE MIR 0 262 169 500 279 20 20 chr6 144546964 144547111 -44732443 - MIR SINE MIR -96 166 20 575 115 52 0 chr6 144548602 144548698 -44730856 + L1PA12 LINE L1 6066 6166 -2 23 0 0 0 chr6 144548698 144548721 -44730833 + AT_rich Low_complexity Low_complexity 1 23 0 382 323 123 50 chr6 144550670 144551231 -44728323 - L1MC/D LINE L1 -2420 3726 3125 1707 118 0 4 chr6 144551977 144552215 -44727339 - AluSg/x SINE Alu -9 303 67 1537 271 22 22 chr6 144552318 144552731 -44726823 - MLT1J2 LTR MaLR -18 432 20 361 324 55 7 chr6 144552796 144552941 -44726613 - L2 LINE L2 0 3272 3121 669 174 25 0 chr6 144552960 144553081 -44726473 - Tigger7 DNA MER2_type 0 2487 2364 560 204 9 0 chr6 144553081 144553194 -44726360 - FLAM_A SINE Alu -6 136 23 761 92 46 0 chr6 144553198 144553328 -44726226 - Tigger7 DNA MER2_type -126 2361 2226 3966 165 9 18 chr6 144553329 144554015 -44725539 - Tigger7 DNA MER2_type -1651 836 157 21 0 0 0 chr6 144555211 144555232 -44724322 + AT_rich Low_complexity Low_complexity 1 21 0 814 231 12 0 chr6 144555270 144555439 -44724115 - AluJo SINE Alu -139 173 3 351 241 0 27 chr6 144555439 144555551 -44724003 + L1M4 LINE L1 2140 2248 -3898 910 231 39 134 chr6 144555649 144556284 -44723270 + L1M4 LINE L1 3121 3695 -2451 1635 189 40 0 chr6 144556286 144556582 -44722972 + AluJb SINE Alu 1 308 -4 533 238 7 0 chr6 144556582 144556725 -44722829 + GA-rich Low_complexity Low_complexity 1 144 0 211 139 0 47 chr6 144556726 144556769 -44722785 + (GGGAA)n Simple_repeat Simple_repeat 3 43 0 442 239 21 35 chr6 144556769 144556911 -44722643 + L1M4 LINE L1 3676 3815 -2331 327 282 99 38 chr6 144557129 144557215 -44722339 + L1M4 LINE L1 2245 2324 -3822 1899 149 78 0 chr6 144557215 144557550 -44722004 - MER46B DNA MER2_type 0 236 1 327 282 99 38 chr6 144557550 144557725 -44721829 + L1M4 LINE L1 2324 2522 -3624 233 203 0 31 chr6 144558149 144558213 -44721341 + T-rich Low_complexity Low_complexity 4 65 0 738 291 113 36 chr6 144558361 144558839 -44720715 - L1MC4a LINE L1 -1911 5897 5383 1113 293 71 18 chr6 144559156 144559773 -44719781 - L1ME3A LINE L1 -224 5946 5297 40 37 0 0 chr6 144559917 144559971 -44719583 + AT_rich Low_complexity Low_complexity 1 54 0 243 248 40 0 chr6 144560520 144560621 -44718933 + (TA)n Simple_repeat Simple_repeat 1 105 0 295 161 37 31 chr6 144560635 144560797 -44718757 + (TA)n Simple_repeat Simple_repeat 2 164 0 306 326 59 7 chr6 144560800 144560935 -44718619 + MIR3 SINE MIR 6 147 -61 2184 172 57 2 chr6 144561683 144562124 -44717430 - L1MC3 LINE L1 0 7785 7321 22 35 0 0 chr6 144562354 144562383 -44717171 + AT_rich Low_complexity Low_complexity 1 29 0 2382 91 0 7 chr6 144562452 144562761 -44716793 - AluSc SINE Alu -2 307 1 1521 176 3 44 chr6 144562793 144563111 -44716443 + AluJo SINE Alu 5 310 0 1413 266 65 29 chr6 144563134 144563796 -44715758 - HAL1b LINE L1 -379 969 284 674 270 18 98 chr6 144565310 144565706 -44713848 + Charlie8 DNA MER1_type 51 414 -2003 264 282 0 24 chr6 144565695 144565780 -44713774 + Charlie8 DNA MER1_type 2330 2412 -5 * 3681 193 72 18 chr6 144566021 144566843 -44712711 + Charlie1 DNA MER1_type 1775 2653 -108 1746 168 0 11 chr6 144566843 144567123 -44712431 - AluJo SINE Alu -14 298 22 3681 193 72 18 chr6 144567123 144567223 -44712331 + Charlie1 DNA MER1_type 2653 2746 -15 237 222 16 16 chr6 144567254 144567317 -44712237 + (TA)n Simple_repeat Simple_repeat 1 63 0 2117 102 10 10 chr6 144567318 144567612 -44711942 - AluSx SINE Alu -18 294 1 564 273 77 82 chr6 144567631 144567983 -44711571 - L1MC4a LINE L1 -1878 5930 5581 480 306 39 39 chr6 144568732 144568990 -44710564 + L2 LINE L2 3055 3312 -1 2119 122 10 3 chr6 144569065 144569360 -44710194 + AluSg SINE Alu 1 297 -13 1173 146 10 44 chr6 144569705 144569910 -44709644 - AluSg/x SINE Alu -10 302 105 3160 116 46 33 chr6 144570065 144570583 -44708971 - MER1A DNA MER1_type 0 527 3 844 189 41 6 chr6 144570843 144571026 -44708528 + MLT1E LTR MaLR 426 592 -1 328 301 19 10 chr6 144571452 144571555 -44707999 + MIR SINE MIR 159 262 0 321 312 49 39 chr6 144572229 144572434 -44707120 - L2 LINE L2 -8 3305 3099 288 227 103 62 chr6 144572506 144572603 -44706951 + L2 LINE L2 3205 3305 -8 2956 134 20 14 chr6 144572612 144573112 -44706442 - L1MB3 LINE L1 -10 6173 5671 252 0 0 0 chr6 144573504 144573532 -44706022 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1638 153 26 8 chr6 144573541 144573809 -44705745 - AluJb SINE Alu -34 278 6 401 309 193 10 chr6 144573969 144574176 -44705378 - MIR SINE MIR 0 262 18 411 375 85 20 chr6 144574418 144574973 -44704581 - L2 LINE L2 -1232 2082 1492 1450 169 8 4 chr6 144575014 144575263 -44704291 - AluJo SINE Alu 0 312 63 366 250 34 0 chr6 144576380 144576468 -44703086 - L2 LINE L2 -6 3307 3217 3759 170 17 7 chr6 144576469 144577191 -44702363 + L1MA7 LINE L1 5325 6053 -238 675 98 38 45 chr6 144577192 144577324 -44702230 + L1MA7 LINE L1 6161 6291 0 830 223 75 0 chr6 144577350 144577538 -44702016 - MIR SINE MIR -10 252 51 249 174 0 22 chr6 144578145 144578191 -44701363 - MLT1K LTR MaLR -356 232 188 1338 54 0 0 chr6 144578525 144578693 -44700861 + L1PA6 LINE L1 5982 6149 -5 236 274 16 0 chr6 144578694 144578756 -44700798 + MIR SINE MIR 200 262 0 676 160 84 0 chr6 144579463 144579582 -44699972 + FRAM SINE Alu 4 132 -44 758 71 31 8 chr6 144579592 144579719 -44699835 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 350 306 116 41 chr6 144579897 144580361 -44699193 + L1ME LINE L1 5321 5819 -302 702 303 26 17 chr6 144580447 144580678 -44698876 + MIR SINE MIR 23 255 -7 252 0 0 0 chr6 144581128 144581156 -44698398 + (TG)n Simple_repeat Simple_repeat 1 28 0 689 202 9 0 chr6 144581243 144581357 -44698197 - FLAM_A SINE Alu -18 115 1 251 256 108 85 chr6 144581997 144582126 -44697428 + MIR SINE MIR 59 190 -72 180 302 243 18 chr6 144582424 144582593 -44696961 - MIR SINE MIR -10 252 46 202 158 0 53 chr6 144582954 144583011 -44696543 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 217 308 50 76 chr6 144583285 144583483 -44696071 - L2 LINE L2 -5 3267 3075 449 326 44 35 chr6 144583873 144584100 -44695454 + MIR SINE MIR 34 262 0 2260 91 3 0 chr6 144584136 144584433 -44695121 - AluSg SINE Alu -12 298 1 736 184 122 76 chr6 144584880 144585155 -44694399 + MLT2B1 LTR ERVL 265 499 -21 354 265 0 34 chr6 144585367 144585484 -44694070 + MER103 DNA DNA 8 120 -46 234 0 0 0 chr6 144585545 144585571 -44693983 + (T)n Simple_repeat Simple_repeat 1 26 0 626 107 0 0 chr6 144586053 144586137 -44693417 - AluS SINE Alu -229 84 1 1275 205 102 68 chr6 144587450 144587532 -44692022 + MSTD LTR MaLR 1 79 -317 1909 142 7 28 chr6 144587532 144587849 -44691705 + AluSx SINE Alu 1 311 0 1275 205 102 68 chr6 144587849 144588146 -44691408 + MSTD LTR MaLR 79 394 -2 514 299 24 62 chr6 144588209 144588550 -44691004 + MLT1I LTR MaLR 64 391 -18 308 301 58 19 chr6 144588560 144588663 -44690891 + MIR SINE MIR 113 219 -43 422 203 55 77 chr6 144588889 144589071 -44690483 - MER5C DNA MER1_type -19 305 128 1639 153 39 36 chr6 144589367 144589675 -44689879 - AluJo SINE Alu -3 309 1 689 183 0 29 chr6 144589675 144589812 -44689742 - AluJo/FLAM SINE Alu -169 133 1 2437 155 14 11 chr6 144590464 144590909 -44688645 - Tigger2 DNA MER2_type 0 2718 2273 447 88 0 44 chr6 144590899 144590967 -44688587 - Tigger2 DNA MER2_type -2649 69 5 * 324 0 0 0 chr6 144590971 144591007 -44688547 + (CA)n Simple_repeat Simple_repeat 1 36 0 182 188 0 21 chr6 144591009 144591057 -44688497 + (TA)n Simple_repeat Simple_repeat 2 48 0 1503 170 19 51 chr6 144591531 144591843 -44687711 + AluJb SINE Alu 11 312 0 1746 206 171 22 chr6 144591886 144592628 -44686926 - Charlie2 DNA MER1_type -155 2707 1855 555 280 82 35 chr6 144592666 144592948 -44686606 - Charlie2 DNA MER1_type -2560 302 8 281 329 35 100 chr6 144593284 144593515 -44686039 + L2 LINE L2 3038 3253 -19 266 271 105 44 chr6 144593796 144593977 -44685577 - L2 LINE L2 -438 2876 2685 34 24 0 0 chr6 144594039 144594080 -44685474 + AT_rich Low_complexity Low_complexity 1 41 0 264 307 14 0 chr6 144594150 144594268 -44685286 + L1M4c LINE L1 1367 1446 -4834 523 165 0 10 chr6 144594280 144594377 -44685177 - MLT1B LTR MaLR -8 382 287 1256 241 70 0 chr6 144594455 144594770 -44684784 - MLT1C-int LTR MaLR -159 1212 876 3007 207 38 5 chr6 144594846 144595592 -44683962 - MLT1C-int LTR MaLR -484 887 27 297 163 0 0 chr6 144595601 144595650 -44683904 - MLT1C-int LTR MaLR -1322 49 1 1579 228 51 27 chr6 144595650 144596101 -44683453 - MLT1C LTR MaLR 0 467 6 230 296 12 25 chr6 144596135 144596216 -44683338 + HAL1 LINE L1 1505 1584 -923 * 274 288 109 5 chr6 144596202 144596386 -44683168 + L1M4c LINE L1 1765 1967 -4596 321 267 88 23 chr6 144596696 144596916 -44682638 + L1M4c LINE L1 2351 2544 -3838 473 204 34 0 chr6 144597111 144597199 -44682355 + AluJ/FLAM SINE Alu 2 92 -220 757 295 120 39 chr6 144597207 144597879 -44681675 + L1M4c LINE L1 2745 3361 -3021 306 67 0 0 chr6 144597879 144597924 -44681630 + (TG)n Simple_repeat Simple_repeat 2 46 0 757 295 120 39 chr6 144597924 144598233 -44681321 + L1M4c LINE L1 3361 3643 -2739 279 0 0 0 chr6 144598233 144598264 -44681290 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1569 200 3 14 chr6 144598268 144598553 -44681001 - AluJo SINE Alu -30 282 1 757 295 120 39 chr6 144598553 144598704 -44680850 + L1M4c LINE L1 3645 3976 -2406 786 292 33 31 chr6 144598763 144599276 -44680278 + L1M4c LINE L1 4113 4626 -1756 1516 270 57 26 chr6 144599346 144600064 -44679490 + L1MC4 LINE L1 6939 7678 -364 600 312 45 26 chr6 144600094 144600508 -44679046 - MLT2F LTR ERVL -11 652 190 1309 180 64 4 chr6 144600653 144600920 -44678634 - ERVL LTR ERVL -403 5361 5079 1147 266 124 64 chr6 144601283 144602163 -44677391 + L2 LINE L2 2395 3313 0 595 337 82 22 chr6 144602233 144602667 -44676887 + LTR33 LTR ERVL 23 483 -38 1131 320 80 0 chr6 144602667 144603145 -44676409 + LTR33 LTR ERVL 1 516 -5 362 187 33 0 chr6 144603535 144603626 -44675928 - L1MB4 LINE L1 -1 6179 6086 1881 132 66 38 chr6 144604200 144604565 -44674989 - THE1C LTR MaLR 0 375 1 408 306 125 12 chr6 144604965 144605285 -44674269 - MLT1J LTR MaLR -145 366 11 1791 179 3 7 chr6 144606263 144606565 -44672989 + AluJb SINE Alu 1 301 -11 304 320 59 26 chr6 144606598 144606751 -44672803 - MIR3 SINE MIR -31 177 20 2059 131 3 0 chr6 144606866 144607171 -44672383 - AluSq SINE Alu 0 307 2 297 283 83 8 chr6 144608258 144608378 -44671176 + L2 LINE L2 3178 3306 -7 204 40 0 0 chr6 144610066 144610091 -44669463 + (CGG)n Simple_repeat Simple_repeat 1 25 0 290 334 117 2 chr6 144613765 144613929 -44665625 + MIR3 SINE MIR 9 191 -63 384 294 94 6 chr6 144616473 144616643 -44662911 - MIR SINE MIR -18 244 60 194 227 68 0 chr6 144617517 144617561 -44661993 - MIR SINE MIR -10 252 206 2344 97 48 13 chr6 144667583 144667955 -44611599 + HERVH LTR ERV1 7329 7713 0 2502 92 122 10 chr6 144667955 144668358 -44611196 + LTR7 LTR ERV1 1 448 -2 1697 175 3 21 chr6 144668358 144668644 -44610910 - AluJo SINE Alu -31 281 1 2045 90 0 50 chr6 144670414 144670714 -44608840 + AluY SINE Alu 20 304 -7 199 398 59 0 chr6 144671236 144671354 -44608200 + L2 LINE L2 2570 2694 -620 370 274 0 21 chr6 144671418 144671513 -44608041 - MER5B DNA MER1_type 0 178 86 287 248 316 0 chr6 144671528 144671661 -44607893 + MER5A DNA MER1_type 9 183 -6 228 341 77 82 chr6 144671846 144672210 -44607344 + L2 LINE L2 2910 3271 -1 646 224 14 123 chr6 144672321 144672678 -44606876 + L2 LINE L2 2996 3313 0 337 219 0 114 chr6 144672758 144672863 -44606691 + MER103 DNA DNA 23 115 -51 378 302 0 6 chr6 144673418 144673532 -44606022 - MIR SINE MIR -51 157 46 25 51 0 0 chr6 144674187 144674226 -44605328 + AT_rich Low_complexity Low_complexity 1 39 0 1225 178 47 0 chr6 144674537 144674750 -44604804 + AluJb SINE Alu 78 300 -12 22 0 0 0 chr6 144675289 144675311 -44604243 + AT_rich Low_complexity Low_complexity 1 22 0 2103 133 0 0 chr6 144675415 144675739 -44603815 - AluSx SINE Alu 0 324 1 253 339 62 18 chr6 144675761 144675873 -44603681 - L2 LINE L2 -22 3250 3134 1070 204 0 43 chr6 144677088 144677323 -44602231 + AluJo SINE Alu 87 311 -1 411 248 39 16 chr6 144677450 144677579 -44601975 - MIR SINE MIR -20 242 111 274 333 37 9 chr6 144678198 144678306 -44601248 + MIR SINE MIR 97 207 -55 3734 135 19 4 chr6 144678502 144679020 -44600534 + MER1A DNA MER1_type 1 526 -1 339 298 83 8 chr6 144680160 144680281 -44599273 - MIR3 SINE MIR -34 174 45 2175 125 7 3 chr6 144680450 144680747 -44598807 + AluSq SINE Alu 1 298 -15 1738 78 0 0 chr6 144680754 144680971 -44598583 + MER4B LTR ERV1 1 217 -393 1315 153 0 0 chr6 144680973 144681163 -44598391 + AluY SINE Alu 1 190 -121 1378 123 38 0 chr6 144681300 144681512 -44598042 - HERVH LTR ERV1 -1894 5819 5600 4566 128 1 1 chr6 144681513 144682175 -44597379 - HERVH LTR ERV1 -2564 5149 4488 5940 87 30 2 chr6 144682177 144683008 -44596546 - HERVH LTR ERV1 -3720 3993 3140 * 19858 76 2 19 chr6 144682994 144685723 -44593831 - HERVH LTR ERV1 -4721 2992 310 339 213 2 64 chr6 144686598 144686707 -44592847 + L1ME1 LINE L1 5910 6017 -161 2238 105 3 16 chr6 144686753 144687066 -44592488 - AluSc SINE Alu 0 309 1 1917 166 3 3 chr6 144687068 144687370 -44592184 - AluJb SINE Alu -10 302 1 314 169 0 0 chr6 144687372 144687431 -44592123 + L1MB8 LINE L1 6114 6172 -6 228 240 0 0 chr6 144688016 144688066 -44591488 - L2 LINE L2 -1 3312 3263 2364 80 0 7 chr6 144688208 144688508 -44591046 - AluSc SINE Alu -9 300 3 375 266 0 21 chr6 144689309 144689403 -44590151 + MER5B DNA MER1_type 5 96 -82 302 329 13 58 chr6 144689953 144690108 -44589446 - L1MC4 LINE L1 -384 7658 7511 259 240 0 0 chr6 144690335 144690385 -44589169 + L2 LINE L2 3219 3268 -4 2274 97 0 10 chr6 144691334 144691633 -44587921 + AluSp SINE Alu 1 296 -17 185 390 152 0 chr6 144691757 144691862 -44587692 - L2 LINE L2 -11 3261 3141 188 132 0 26 chr6 144691862 144691900 -44587654 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 333 336 141 35 chr6 144692110 144692479 -44587075 + L2 LINE L2 1961 2368 -946 217 132 0 0 chr6 144692480 144692518 -44587036 + (A)n Simple_repeat Simple_repeat 1 38 0 1143 262 128 3 chr6 144692534 144692878 -44586676 + MLT1B LTR MaLR 4 390 0 2718 266 65 22 chr6 144693095 144694082 -44585472 + L1ME LINE L1 1 1029 -5041 2609 102 122 5 chr6 144695695 144696096 -44583458 + LTR7 LTR ERV1 1 448 -2 752 63 0 0 chr6 144696098 144696193 -44583361 + HERVH LTR ERV1 1 95 -7618 1684 146 8 0 chr6 144696356 144696617 -44582937 + AluSg SINE Alu 41 303 -7 3127 107 22 7 chr6 144696826 144697273 -44582281 + L1PB1 LINE L1 5696 6149 -2 1794 189 42 12 chr6 144698214 144698547 -44581007 + MER61A LTR ERV1 1 343 0 207 69 0 0 chr6 144701173 144701202 -44578352 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr6 144701800 144701821 -44577733 + AT_rich Low_complexity Low_complexity 1 21 0 1632 161 3 48 chr6 144701823 144702134 -44577420 - AluJo SINE Alu -15 297 1 202 299 96 45 chr6 144702438 144702574 -44576980 + MIR SINE MIR 21 165 -97 300 382 24 18 chr6 144703030 144703200 -44576354 + MIR3 SINE MIR 10 180 -28 2720 81 13 31 chr6 144703287 144703551 -44576003 - MER4B LTR ERV1 0 610 354 2413 101 0 0 chr6 144703551 144703858 -44575696 + AluSx SINE Alu 1 307 -5 2720 81 13 31 chr6 144703858 144703977 -44575577 - MER4B LTR ERV1 -256 354 234 2203 116 3 0 chr6 144705583 144705876 -44573678 + AluSp SINE Alu 1 294 -19 188 289 24 72 chr6 144706074 144706157 -44573397 - L2 LINE L2 0 3272 3194 678 286 52 28 chr6 144706364 144706612 -44572942 - MIR SINE MIR 0 262 9 222 37 0 0 chr6 144706655 144706682 -44572872 + (T)n Simple_repeat Simple_repeat 1 27 0 30 83 0 0 chr6 144706756 144706828 -44572726 + AT_rich Low_complexity Low_complexity 1 72 0 2326 100 0 0 chr6 144708834 144709143 -44570411 - AluSx SINE Alu -1 311 3 893 134 0 8 chr6 144709387 144709521 -44570033 + FLAM_A SINE Alu 1 133 0 261 294 47 12 chr6 144709586 144709671 -44569883 - Charlie8 DNA MER1_type -2328 89 2 2126 136 7 0 chr6 144710359 144710668 -44568886 - AluSx SINE Alu -1 311 1 2145 109 7 0 chr6 144712102 144712387 -44567167 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr6 144712393 144712414 -44567140 + AT_rich Low_complexity Low_complexity 1 21 0 51 42 0 0 chr6 144712955 144713027 -44566527 + AT_rich Low_complexity Low_complexity 1 72 0 1901 168 7 3 chr6 144713816 144714120 -44565434 + AluJb SINE Alu 1 305 -7 3705 227 164 45 chr6 144714614 144715711 -44563843 - L1MC4 LINE L1 0 8042 6739 1849 138 34 14 chr6 144715711 144716007 -44563547 + AluJb SINE Alu 1 302 -10 3705 227 164 45 chr6 144716007 144716314 -44563240 - L1MC4 LINE L1 -1303 6739 6470 4478 113 30 8 chr6 144716376 144717005 -44562549 + L1PA15 LINE L1 5523 6165 0 596 192 80 36 chr6 144717053 144717219 -44562335 - L1MEc LINE L1 -5064 1883 1609 231 114 0 0 chr6 144717219 144717254 -44562300 + (TG)n Simple_repeat Simple_repeat 2 36 0 596 192 80 36 chr6 144717254 144717295 -44562259 - L1MEc LINE L1 -5338 1609 1571 1774 131 7 18 chr6 144717295 144717569 -44561985 + ERVL LTR ERVL 4575 4845 -919 2366 106 0 0 chr6 144717830 144718131 -44561423 - AluSx SINE Alu -11 301 1 321 320 73 43 chr6 144718232 144718535 -44561019 - L1MEc LINE L1 -6045 1093 782 2253 90 3 10 chr6 144718541 144718860 -44560694 - AluSp SINE Alu 0 313 1 2208 110 0 0 chr6 144719514 144719822 -44559732 + AluSx SINE Alu 1 308 0 267 256 33 11 chr6 144720424 144720514 -44559040 + MIR SINE MIR 167 258 -4 198 91 0 0 chr6 144720770 144720803 -44558751 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1782 157 3 7 chr6 144720810 144721096 -44558458 - AluJb SINE Alu -27 285 1 254 298 29 39 chr6 144721246 144721350 -44558204 - L3 LINE CR1 -85 1492 1390 22 0 0 0 chr6 144721355 144721377 -44558177 + AT_rich Low_complexity Low_complexity 1 22 0 2189 101 0 7 chr6 144721553 144721839 -44557715 + AluSx SINE Alu 23 306 -6 338 162 14 0 chr6 144721839 144721913 -44557641 + (TA)n Simple_repeat Simple_repeat 1 75 0 459 322 82 12 chr6 144723063 144723274 -44556280 + L1ME3 LINE L1 3383 3627 -2519 1835 134 52 0 chr6 144723274 144723564 -44555990 + AluSx SINE Alu 1 305 -7 459 322 82 12 chr6 144723564 144723681 -44555873 + L1ME3 LINE L1 3627 3734 -2412 698 203 8 8 chr6 144723907 144724030 -44555524 + FLAM_C SINE Alu 2 124 -19 1796 125 0 4 chr6 144724042 144724336 -44555218 + AluSx SINE Alu 39 331 0 1073 279 106 47 chr6 144724392 144724562 -44554992 + L1ME3 LINE L1 3851 4010 -2136 1713 160 43 0 chr6 144724562 144724843 -44554711 - AluJo SINE Alu -18 294 2 1073 279 106 47 chr6 144724843 144725709 -44553845 + L1ME3 LINE L1 4010 4948 -1198 3552 127 44 47 chr6 144725821 144726275 -44553279 - MER51A LTR ERV1 0 634 181 2438 128 19 25 chr6 144726275 144726641 -44552913 + THE1B LTR MaLR 1 364 0 3552 127 44 47 chr6 144726641 144726822 -44552732 - MER51A LTR ERV1 -453 181 1 1118 273 68 39 chr6 144726823 144727646 -44551908 + L1ME3 LINE L1 5108 5950 -212 483 250 26 0 chr6 144728859 144728975 -44550579 - MIR3 SINE MIR -8 200 82 643 208 8 8 chr6 144729702 144729827 -44549727 - FLAM_C SINE Alu -8 125 1 1032 116 57 181 chr6 144730024 144730129 -44549425 + MER33 DNA MER1_type 1 117 -2468 679 179 8 22 chr6 144730129 144730263 -44549291 - FLAM_A SINE Alu -1 132 1 1032 116 57 181 chr6 144730263 144730527 -44549027 + MER33 DNA MER1_type 117 324 0 378 202 77 0 chr6 144731969 144732068 -44547486 - MLT1I LTR MaLR -263 146 42 884 200 15 0 chr6 144732100 144732305 -44547249 + L1M4 LINE L1 2412 2619 -3527 182 116 23 0 chr6 144732559 144732602 -44546952 + A-rich Low_complexity Low_complexity 2 45 0 338 324 0 0 chr6 144733738 144733849 -44545705 + L1M4 LINE L1 4979 5089 -1057 458 325 111 26 chr6 144733852 144734203 -44545351 + L1M4 LINE L1 5279 5659 -462 1752 155 16 35 chr6 144735790 144736100 -44543454 - AluJb SINE Alu -8 304 1 3412 68 11 4 chr6 144737026 144737485 -44542069 - L1PA8 LINE L1 -3 6169 5708 14831 135 200 87 chr6 144737485 144741620 -44537934 - L1P LINE L1 -1540 4606 3 293 366 33 27 chr6 144743147 144743330 -44536224 - MIR SINE MIR -71 191 8 193 296 26 122 chr6 144743644 144743914 -44535640 - L2 LINE L2 -212 3060 2817 675 213 37 18 chr6 144744058 144744222 -44535332 - MER5A DNA MER1_type 0 189 23 246 257 43 29 chr6 144744227 144744297 -44535257 + MER5B DNA MER1_type 102 172 -6 386 219 215 39 chr6 144744684 144744793 -44534761 + L1MC4 LINE L1 7705 7794 -248 2237 121 0 3 chr6 144744793 144745100 -44534454 - AluSq SINE Alu -7 306 1 1905 153 0 44 chr6 144745100 144745420 -44534134 - AluJb SINE Alu -6 306 1 386 219 215 39 chr6 144745420 144745483 -44534071 + L1MC4 LINE L1 7794 7845 -197 186 43 0 0 chr6 144745483 144745506 -44534048 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 386 219 215 39 chr6 144745506 144745536 -44534018 + L1MC4 LINE L1 7845 7945 -97 199 51 0 51 chr6 144745598 144745637 -44533917 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 715 231 35 0 chr6 144745674 144745843 -44533711 + MER20 DNA MER1_type 43 217 -2 2453 90 3 0 chr6 144745918 144746230 -44533324 - AluSq SINE Alu 0 313 1 322 281 83 8 chr6 144746702 144746823 -44532731 + L1MC4a LINE L1 6041 6170 -1638 1801 77 0 0 chr6 144746849 144747071 -44532483 + AluY SINE Alu 83 304 -7 206 203 34 0 chr6 144747199 144747258 -44532296 + T-rich Low_complexity Low_complexity 4 64 0 835 169 6 6 chr6 144747503 144747681 -44531873 + GA-rich Low_complexity Low_complexity 3 180 0 328 107 36 0 chr6 144747989 144748045 -44531509 - L1MB2 LINE L1 -45 6126 6069 245 176 432 0 chr6 144748118 144748192 -44531362 + MER5B DNA MER1_type 1 106 -72 200 262 24 0 chr6 144748181 144748223 -44531331 - MER5B DNA MER1_type -135 43 1 * 962 81 0 0 chr6 144748226 144748349 -44531205 + AluSg/x SINE Alu 186 308 -1 249 98 0 0 chr6 144748802 144748843 -44530711 + (GA)n Simple_repeat Simple_repeat 1 41 0 308 277 0 9 chr6 144748873 144748985 -44530569 + GA-rich Low_complexity Low_complexity 2 112 0 610 244 98 12 chr6 144749175 144749339 -44530215 + MIR SINE MIR 79 256 -6 194 298 113 40 chr6 144749626 144749777 -44529777 - MIR3 SINE MIR -42 166 5 189 336 45 30 chr6 144750704 144750838 -44528716 - L2 LINE L2 -925 2389 2254 239 250 0 0 chr6 144751197 144751253 -44528301 + LTR67 LTR ERVL 494 549 -8 214 170 106 0 chr6 144751390 144751437 -44528117 + MIR SINE MIR 64 115 -147 * 795 282 97 103 chr6 144751428 144752464 -44527090 + L2 LINE L2 2302 3312 -1 383 237 0 31 chr6 144752530 144752627 -44526927 + MIR SINE MIR 169 262 0 23 0 0 0 chr6 144754673 144754696 -44524858 + AT_rich Low_complexity Low_complexity 1 23 0 850 101 0 0 chr6 144754948 144755057 -44524497 + AluJb SINE Alu 192 300 -12 22 56 0 0 chr6 144755164 144755200 -44524354 + AT_rich Low_complexity Low_complexity 1 36 0 418 262 240 33 chr6 144757451 144757634 -44521920 + MIR SINE MIR 34 254 -8 2226 107 3 3 chr6 144757640 144757950 -44521604 - AluSg SINE Alu 0 310 1 6142 77 1 2 chr6 144758104 144758962 -44520592 - L1PA8 LINE L1 0 6172 5316 240 100 0 0 chr6 144761188 144761228 -44518326 + (AATTG)n Simple_repeat Simple_repeat 1 40 0 471 291 104 32 chr6 144761280 144761500 -44518054 - MIR SINE MIR -20 242 7 640 347 4 16 chr6 144761611 144761853 -44517701 - MIR SINE MIR -22 240 2 1503 185 11 11 chr6 144761894 144762164 -44517390 + AluJo SINE Alu 25 294 -18 3870 18 0 7 chr6 144762326 144762826 -44516728 - L1PA2 LINE L1 0 6155 5702 1657 187 0 35 chr6 144763096 144763411 -44516143 - AluJo SINE Alu -8 304 1 21 0 0 0 chr6 144763413 144763434 -44516120 + AT_rich Low_complexity Low_complexity 1 21 0 2310 126 0 3 chr6 144766469 144766827 -44512727 - L1PA14 LINE L1 0 6161 5805 1822 114 0 0 chr6 144767200 144767436 -44512118 + AluSx SINE Alu 37 272 -40 29 47 0 0 chr6 144767488 144767531 -44512023 + AT_rich Low_complexity Low_complexity 1 43 0 807 258 8 50 chr6 144767756 144768016 -44511538 + MIR SINE MIR 11 259 -3 697 217 39 39 chr6 144768125 144768305 -44511249 + MIR SINE MIR 11 190 -72 989 275 65 6 chr6 144769337 144769675 -44509879 - LTR16A LTR ERVL -10 440 83 2421 88 3 0 chr6 144770089 144770394 -44509160 + AluSp SINE Alu 1 306 -7 363 105 0 0 chr6 144771476 144771533 -44508021 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 2963 168 124 14 chr6 144772153 144772856 -44506698 - LTR48 LTR ERV1 0 787 11 254 252 0 70 chr6 144773472 144773587 -44505967 - L1ME LINE L1 -318 5803 5697 724 223 65 112 chr6 144773624 144774027 -44505527 - MLT1J LTR MaLR -30 481 98 487 284 25 59 chr6 144776129 144776333 -44503221 + L3 LINE CR1 1230 1426 -151 722 225 8 8 chr6 144776352 144776588 -44502966 + L1ME3A LINE L1 4343 4578 -1568 1645 251 77 19 chr6 144776607 144776928 -44502626 + L1ME3A LINE L1 5338 5639 -531 3359 92 70 26 chr6 144776928 144777459 -44502095 - MER41A LTR ERV1 0 554 1 1645 251 77 19 chr6 144777459 144777774 -44501780 + L1ME3A LINE L1 5639 6011 -159 533 241 75 15 chr6 144778360 144778493 -44501061 + Charlie8 DNA MER1_type 102 242 -2175 4324 143 21 25 chr6 144779220 144779983 -44499571 - LTR1 LTR ERV1 -25 760 1 2119 120 0 0 chr6 144780140 144780465 -44499089 - AluY SINE Alu 0 325 1 202 195 0 0 chr6 144780538 144780579 -44498975 + (TG)n Simple_repeat Simple_repeat 2 42 0 260 319 0 0 chr6 144780580 144780674 -44498880 + GA-rich Low_complexity Low_complexity 2 95 0 1802 173 63 5 chr6 144780705 144781065 -44498489 - LOR1b LTR ERV1 0 461 1 310 325 60 12 chr6 144781788 144781954 -44497600 - MER5B DNA MER1_type -1 177 4 2119 75 27 30 chr6 144782092 144782387 -44497167 + AluSq SINE Alu 1 294 -19 2764 161 8 14 chr6 144782497 144783013 -44496541 - L1MB4 LINE L1 -6 6174 5662 2187 137 0 0 chr6 144783054 144783361 -44496193 + AluSq SINE Alu 2 308 -5 286 276 35 46 chr6 144783436 144783523 -44496031 - MIR3 SINE MIR -47 161 76 463 267 55 12 chr6 144784006 144784171 -44495383 + MER5B DNA MER1_type 5 176 -2 339 409 31 0 chr6 144785206 144785365 -44494189 + L2 LINE L2 3104 3267 -5 2298 95 3 3 chr6 144785929 144786235 -44493319 - AluSx SINE Alu -6 306 1 256 163 0 20 chr6 144786278 144786327 -44493227 + L2 LINE L2 3266 3313 0 307 374 41 32 chr6 144786357 144786576 -44492978 + L3 LINE CR1 461 681 -896 1893 83 70 30 chr6 144786838 144787138 -44492416 - AluSx SINE Alu 0 312 1 195 100 0 0 chr6 144787507 144787537 -44492017 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 1465 258 107 59 chr6 144787762 144788400 -44491154 + L2 LINE L2 2452 3114 -199 2030 144 0 0 chr6 144788400 144788692 -44490862 - AluSx SINE Alu -20 292 1 1465 258 107 59 chr6 144788692 144788903 -44490651 + L2 LINE L2 3114 3313 0 1920 176 70 44 chr6 144789995 144790449 -44489105 - MLT1C LTR MaLR 0 467 2 23 33 0 0 chr6 144792603 144792633 -44486921 + AT_rich Low_complexity Low_complexity 1 30 0 206 357 83 0 chr6 144793748 144793832 -44485722 + MIR SINE MIR 115 205 -57 26 0 0 0 chr6 144794458 144794484 -44485070 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr6 144795256 144795281 -44484273 + AT_rich Low_complexity Low_complexity 1 25 0 277 290 99 0 chr6 144795430 144795561 -44483993 + MIR SINE MIR 119 262 0 226 332 201 9 chr6 144796590 144796804 -44482750 + MLT1L LTR MaLR 15 269 -346 391 329 71 6 chr6 144796850 144797020 -44482534 + MLT1L LTR MaLR 353 533 -82 526 246 89 31 chr6 144797024 144797248 -44482306 + L1MEc LINE L1 2057 2293 -4532 208 302 123 28 chr6 144797687 144797793 -44481761 + L2 LINE L2 3155 3270 -2 2228 98 10 3 chr6 144798002 144798309 -44481245 - AluSx SINE Alu -3 309 1 2156 102 0 3 chr6 144798828 144799122 -44480432 - AluSg SINE Alu -17 293 1 391 351 34 64 chr6 144799142 144799438 -44480116 + L1MEd LINE L1 947 1233 -4886 1011 263 67 105 chr6 144799891 144800576 -44478978 + L1MEc LINE L1 485 1143 -5399 481 277 67 32 chr6 144800621 144800935 -44478619 + L1MEc LINE L1 2362 2686 -3960 890 210 112 0 chr6 144801569 144801802 -44477752 + L1MB7 LINE L1 5896 6154 -30 2458 136 48 10 chr6 144801802 144802198 -44477356 - MSTA LTR MaLR 0 428 18 2085 141 0 0 chr6 144802875 144803181 -44476373 + AluSq SINE Alu 1 306 -7 827 223 56 0 chr6 144803470 144803667 -44475887 + MER3 DNA MER1_type 2 209 0 430 317 14 0 chr6 144803897 144804042 -44475512 + LTR16C LTR ERVL 263 409 -82 376 332 25 8 chr6 144804183 144804321 -44475233 + MIR SINE MIR 37 174 -61 372 281 35 84 chr6 144804648 144804851 -44474703 - MER21B LTR ERV1 -186 677 485 801 61 0 0 chr6 144804853 144804952 -44474602 - L1PA7 LINE L1 -8 6146 6048 492 281 77 77 chr6 144805515 144805839 -44473715 - L1MC/D LINE L1 -2121 5687 5364 316 98 0 0 chr6 144805839 144805907 -44473647 - AluSp/q SINE Alu 0 310 243 1646 164 46 7 chr6 144806440 144806721 -44472833 + AluJb SINE Alu 4 295 -17 350 256 96 16 chr6 144807401 144807526 -44472028 - MIR SINE MIR 0 262 128 2187 125 0 0 chr6 144807979 144808276 -44471278 - AluSg SINE Alu -13 297 1 358 329 54 0 chr6 144809199 144809348 -44470206 - MIR SINE MIR -55 207 51 2236 111 0 0 chr6 144810355 144810653 -44468901 - AluSx SINE Alu -14 298 1 251 327 48 39 chr6 144810740 144810844 -44468710 - MIR SINE MIR -86 122 18 22 35 0 0 chr6 144811009 144811038 -44468516 + AT_rich Low_complexity Low_complexity 1 29 0 207 287 53 11 chr6 144811113 144811207 -44468347 - MIR3 SINE MIR -5 203 106 233 204 93 0 chr6 144811729 144811783 -44467771 - MER34B LTR ERV1 -462 103 45 1295 201 99 40 chr6 144812145 144812519 -44467035 + MSTD LTR MaLR 1 396 0 2240 104 0 19 chr6 144812801 144813108 -44466446 - AluSg SINE Alu -9 301 1 24 53 0 0 chr6 144813209 144813247 -44466307 + AT_rich Low_complexity Low_complexity 1 38 0 34 24 0 0 chr6 144813389 144813430 -44466124 + AT_rich Low_complexity Low_complexity 1 41 0 271 122 24 0 chr6 144813448 144813489 -44466065 + LTR34 LTR ERV1 583 624 -75 1188 208 0 9 chr6 144813788 144814009 -44465545 - MER58A DNA MER1_type -4 220 2 442 338 80 6 chr6 144815059 144815258 -44464296 - MIR SINE MIR -33 229 15 492 247 14 155 chr6 144815914 144816051 -44463503 + MIR SINE MIR 13 89 -173 2078 126 7 3 chr6 144816051 144816360 -44463194 + AluSx SINE Alu 1 310 -2 492 247 14 155 chr6 144816360 144816513 -44463041 + MIR SINE MIR 89 262 0 291 279 57 8 chr6 144817652 144817774 -44461780 - LTR67 LTR ERVL -19 538 411 387 336 123 42 chr6 144817821 144818202 -44461352 + L1MC4a LINE L1 6106 6517 -1291 1863 127 8 0 chr6 144818216 144818476 -44461078 + AluSx SINE Alu 14 275 -37 1274 229 63 79 chr6 144818499 144818782 -44460772 + L1MC5 LINE L1 6562 6733 -1075 2094 130 10 0 chr6 144818782 144819082 -44460472 + AluSx SINE Alu 1 303 -9 1274 229 63 79 chr6 144819082 144819334 -44460220 + L1MC5 LINE L1 6733 6987 -821 313 320 93 31 chr6 144819413 144819766 -44459788 - L1M4 LINE L1 -3527 2619 2245 312 27 0 0 chr6 144819771 144819808 -44459746 + (TG)n Simple_repeat Simple_repeat 2 38 0 4353 187 61 16 chr6 144822016 144823449 -44456105 - L1MB7 LINE L1 -16 6562 5056 1708 220 38 15 chr6 144823488 144823967 -44455587 - L1MB7 LINE L1 -3485 3055 2569 24 0 0 0 chr6 144825328 144825352 -44454202 + AT_rich Low_complexity Low_complexity 1 24 0 281 236 114 8 chr6 144825437 144825560 -44453994 - HAL1b LINE L1 -510 838 703 1621 152 3 82 chr6 144825596 144825765 -44453789 - AluJb SINE Alu -21 291 110 207 0 0 0 chr6 144825765 144825788 -44453766 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1621 152 3 82 chr6 144825788 144825799 -44453755 - AluJb SINE Alu -202 110 100 1964 127 0 7 chr6 144825799 144826090 -44453464 - AluSq SINE Alu -24 289 1 1621 152 3 82 chr6 144826090 144826211 -44453343 - AluJb SINE Alu -212 100 13 352 197 16 0 chr6 144826211 144826272 -44453282 - HAL1b LINE L1 -905 443 382 795 184 7 0 chr6 144826310 144826476 -44453078 - L1 LINE L1 -2453 5112 4945 3169 215 41 50 chr6 144826485 144827270 -44452284 - L1 LINE L1 -3089 4476 3699 675 203 0 0 chr6 144827270 144827388 -44452166 - FLAM_C SINE Alu -15 118 1 3169 215 41 50 chr6 144827388 144827701 -44451853 - L1 LINE L1 -3866 3699 3385 1155 224 101 26 chr6 144828576 144828740 -44450814 + MLT1A2 LTR MaLR 1 151 -223 219 36 0 0 chr6 144828740 144828768 -44450786 + (TC)n Simple_repeat Simple_repeat 1 28 0 1155 224 101 26 chr6 144828768 144828951 -44450603 + MLT1A2 LTR MaLR 151 374 0 1165 228 66 64 chr6 144829278 144829764 -44449790 - L1ME3 LINE L1 -1 7580 7094 989 210 32 29 chr6 144829755 144830065 -44449489 - L1MEc LINE L1 -3920 2476 2166 * 614 259 45 53 chr6 144830092 144830339 -44449215 - L1ME1 LINE L1 -6 6160 5916 2018 170 71 15 chr6 144830762 144831168 -44448386 - MSTB1 LTR MaLR -1 431 3 1317 221 39 7 chr6 144831289 144831596 -44447958 - L1MD2 LINE L1 0 6359 6043 267 145 132 26 chr6 144831591 144831667 -44447887 - L1ME3 LINE L1 -901 6760 6677 * 247 286 0 0 chr6 144831667 144831716 -44447838 + Tigger3(Golem) DNA MER2_type 1 49 -2980 2282 168 41 37 chr6 144831717 144832205 -44447349 + LTR2B LTR ERV1 1 490 0 2588 115 10 32 chr6 144832205 144832613 -44446941 + Harlequin LTR ERV1 1 399 -6497 835 101 0 51 chr6 144832584 144832722 -44446832 + HERVE LTR ERV1 255 385 -7428 * 755 130 0 51 chr6 144832706 144832844 -44446710 + HERVE LTR ERV1 255 385 -7428 * 805 121 8 15 chr6 144832828 144832960 -44446594 + HERVE LTR ERV1 255 385 -7428 * 4849 160 113 44 chr6 144832953 144834191 -44445363 + HERVE LTR ERV1 263 1585 -5311 * 38241 71 5 3 chr6 144834177 144839098 -44440456 + HERVE LTR ERV1 1964 6896 0 2117 143 116 66 chr6 144839098 144839565 -44439989 + LTR2B LTR ERV1 1 490 0 868 184 14 0 chr6 144839570 144839717 -44439837 + Tigger3(Golem) DNA MER2_type 52 200 -2829 4441 138 31 6 chr6 144839717 144840447 -44439107 + Tigger3(Golem) DNA MER2_type 2281 3029 0 1406 232 29 20 chr6 144840447 144840896 -44438658 - L1ME3 LINE L1 -887 6678 6226 * 2159 249 77 12 chr6 144840888 144841642 -44437912 - L1ME3 LINE L1 -2575 4990 4188 1897 136 0 36 chr6 144841685 144841987 -44437567 - AluSx SINE Alu -21 291 1 1003 281 85 36 chr6 144842293 144842585 -44436969 - L1MC4a LINE L1 -303 5818 5542 1815 162 16 7 chr6 144842585 144842888 -44436666 - AluJb SINE Alu 0 312 7 1003 281 85 36 chr6 144842888 144843143 -44436411 - L1MC4a LINE L1 -579 5542 5265 2606 87 25 3 chr6 144843266 144843622 -44435932 - THE1B LTR MaLR 0 364 1 280 278 45 15 chr6 144843717 144843850 -44435704 - L1P LINE L1 -1131 5015 4879 24 32 0 0 chr6 144843997 144844028 -44435526 + AT_rich Low_complexity Low_complexity 1 31 0 632 224 0 0 chr6 144844303 144844428 -44435126 - FLAM_A SINE Alu -8 134 10 1810 265 54 27 chr6 144844587 144845867 -44433687 - L1ME3 LINE L1 -3510 4055 2762 1497 216 39 16 chr6 144845867 144846173 -44433381 + MER70A LTR ERVL 1 313 -159 416 321 17 34 chr6 144846188 144846425 -44433129 - L1M3c LINE L1 -5908 233 1 442 310 177 0 chr6 144846555 144846713 -44432841 + MER5A DNA MER1_type 4 189 0 28 0 0 0 chr6 144847239 144847267 -44432287 + AT_rich Low_complexity Low_complexity 1 28 0 1979 204 61 39 chr6 144847482 144847976 -44431578 + MLT1D LTR MaLR 1 505 0 2046 175 57 154 chr6 144848240 144849045 -44430509 - LTR8A LTR ERV1 0 727 1 286 340 48 68 chr6 144849076 144849282 -44430272 + L2 LINE L2 2889 3090 -182 368 309 70 52 chr6 144849290 144849340 -44430214 - MLT1I LTR MaLR -15 422 374 4577 113 3 48 chr6 144849340 144850064 -44429490 + LTR8 LTR ERV1 1 691 0 368 309 70 52 chr6 144850064 144850440 -44429114 - MLT1I LTR MaLR -63 374 1 651 306 55 14 chr6 144850559 144850778 -44428776 + MIR SINE MIR 2 229 -33 2048 119 48 40 chr6 144850785 144851082 -44428472 + THE1C LTR MaLR 2 304 -71 2238 101 17 0 chr6 144851082 144851379 -44428175 - AluSq SINE Alu -11 302 1 2048 119 48 40 chr6 144851379 144851452 -44428102 + THE1C LTR MaLR 304 375 0 225 311 126 36 chr6 144851934 144852211 -44427343 + L2 LINE L2 2047 2348 -966 1915 169 3 29 chr6 144852489 144852837 -44426717 - MER44D DNA MER2_type 0 609 1 312 345 109 19 chr6 144853130 144853231 -44426323 + L2 LINE L2 2709 2800 -472 1630 146 24 0 chr6 144853231 144853477 -44426077 + AluSx SINE Alu 1 252 -60 312 345 109 19 chr6 144853477 144853681 -44425873 + L2 LINE L2 2800 3055 -217 237 108 0 0 chr6 144853719 144853756 -44425798 + (CA)n Simple_repeat Simple_repeat 1 37 0 183 80 0 0 chr6 144853775 144853800 -44425754 + (GA)n Simple_repeat Simple_repeat 2 26 0 614 339 84 44 chr6 144853978 144854500 -44425054 + L1MEd LINE L1 101 643 -5476 608 283 71 41 chr6 144854679 144855320 -44424234 + L1MEd LINE L1 911 1569 -4560 1901 133 0 37 chr6 144855447 144855747 -44423807 - AluSx SINE Alu -23 289 1 204 125 0 0 chr6 144856068 144856100 -44423454 + (GA)n Simple_repeat Simple_repeat 1 32 0 317 341 65 10 chr6 144856214 144856504 -44423050 + L1MEd LINE L1 2213 2518 -3611 313 281 97 51 chr6 144856545 144856762 -44422792 + L1MC4a LINE L1 5678 5904 -1904 426 261 121 48 chr6 144856762 144857034 -44422520 - L2 LINE L2 -989 2325 2034 361 329 28 7 chr6 144857049 144857192 -44422362 + MLT1L LTR MaLR 311 456 -159 191 286 205 9 chr6 144857383 144857495 -44422059 - L2 LINE L2 -45 3227 3094 355 309 120 42 chr6 144857604 144857795 -44421759 - MIR SINE MIR -56 206 1 2012 144 7 0 chr6 144858305 144858604 -44420950 - AluSx SINE Alu -11 301 1 2392 77 0 3 chr6 144859258 144859555 -44419999 + AluSc SINE Alu 1 296 -13 2104 144 30 70 chr6 144859718 144860149 -44419405 - MLT2D LTR ERVL 0 414 1 2079 124 0 0 chr6 144861112 144861394 -44418160 - AluSx SINE Alu -30 282 1 258 344 38 32 chr6 144861528 144861685 -44417869 + MIR SINE MIR 48 205 -57 2081 180 43 35 chr6 144861712 144862172 -44417382 - MLT2C2 LTR ERVL 0 464 1 487 329 111 8 chr6 144862173 144862407 -44417147 + MIR SINE MIR 5 262 0 22 70 0 0 chr6 144862443 144862486 -44417068 + AT_rich Low_complexity Low_complexity 1 43 0 2072 120 0 44 chr6 144862682 144862999 -44416555 - AluSx SINE Alu -9 303 1 2181 97 0 52 chr6 144863852 144864181 -44415373 - AluSx SINE Alu 0 312 1 2440 60 0 7 chr6 144864192 144864512 -44415042 - AluY SINE Alu 0 311 1 2295 104 13 0 chr6 144866508 144866817 -44412737 - AluSp SINE Alu 0 313 1 228 298 143 19 chr6 144866841 144867002 -44412552 - MLT1L LTR MaLR 0 615 435 367 271 49 8 chr6 144867152 144867274 -44412280 - MLT1L LTR MaLR -347 268 142 305 389 102 22 chr6 144867767 144867993 -44411561 + L1M2 LINE L1 14 257 -6592 12571 209 32 33 chr6 144868450 144872416 -44407138 + L1PA16 LINE L1 395 4396 -1827 3380 64 2 0 chr6 144872416 144872851 -44406703 - L1PA6 LINE L1 -1 6153 5718 12571 209 32 33 chr6 144872851 144874662 -44404892 + L1PA16 LINE L1 4396 6207 -16 992 287 57 76 chr6 144874893 144875422 -44404132 + L2 LINE L2 2210 2728 -586 1359 287 87 42 chr6 144875424 144875799 -44403755 - L1M4 LINE L1 -869 5277 4920 1921 93 0 0 chr6 144875799 144876035 -44403519 - AluSx SINE Alu -47 265 30 1359 287 87 42 chr6 144876035 144876521 -44403033 - L1M4 LINE L1 -1226 4920 4457 1842 151 3 3 chr6 144876521 144876806 -44402748 - AluSx SINE Alu -4 308 24 1359 287 87 42 chr6 144876806 144877420 -44402134 - L1M4 LINE L1 -1689 4457 3734 1849 174 67 9 chr6 144877422 144877767 -44401787 - MLT1A1 LTR MaLR 0 365 1 303 233 136 74 chr6 144878148 144878324 -44401230 - LTR50 LTR ERVL -589 206 20 330 293 75 33 chr6 144878338 144878550 -44401004 - L1M4 LINE L1 -2485 3661 3441 580 203 137 26 chr6 144878821 144878974 -44400580 + MER45A DNA AcHobo 8 177 -1 810 0 0 0 chr6 144879944 144880034 -44399520 + (CTATT)n Simple_repeat Simple_repeat 3 92 0 276 274 169 0 chr6 144880481 144880605 -44398949 - MIR SINE MIR -55 207 63 480 251 242 18 chr6 144880835 144881054 -44398500 + MIR SINE MIR 6 262 0 204 40 0 0 chr6 144881517 144881542 -44398012 + (GA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr6 144881967 144881988 -44397566 + AT_rich Low_complexity Low_complexity 1 21 0 939 303 110 57 chr6 144884408 144884647 -44394907 - HAL1 LINE L1 -1601 906 681 631 240 74 0 chr6 144884647 144884822 -44394732 - MER5A DNA MER1_type -1 188 1 933 184 13 53 chr6 144884830 144885058 -44394496 - MER20 DNA MER1_type 0 219 1 939 303 110 57 chr6 144885058 144885667 -44393887 - HAL1 LINE L1 -1832 675 4 321 254 67 67 chr6 144887000 144887134 -44392420 + MIR SINE MIR 79 212 -50 35 24 0 0 chr6 144887332 144887374 -44392180 + AT_rich Low_complexity Low_complexity 1 42 0 2313 101 7 0 chr6 144887603 144887909 -44391645 + AluSx SINE Alu 1 308 -4 229 239 0 56 chr6 144887918 144887989 -44391565 + A-rich Low_complexity Low_complexity 4 70 0 24 0 0 0 chr6 144888066 144888090 -44391464 + AT_rich Low_complexity Low_complexity 1 24 0 297 248 50 10 chr6 144888090 144888191 -44391363 - MIR SINE MIR 0 262 158 412 255 61 40 chr6 144888256 144888505 -44391049 - MER46C DNA MER2_type -28 310 1 294 309 63 8 chr6 144888505 144888631 -44390923 - MIR SINE MIR -105 157 25 322 254 0 0 chr6 144888930 144888993 -44390561 - L2 LINE L2 -7 3306 3244 4081 254 62 57 chr6 144889245 144890018 -44389536 + L1ME2 LINE L1 37 805 -5591 2252 118 0 7 chr6 144890018 144890323 -44389231 - AluSx SINE Alu -9 303 1 4081 254 62 57 chr6 144890323 144891584 -44387970 + L1ME2 LINE L1 805 2085 -4311 192 77 0 0 chr6 144891584 144891610 -44387944 + (CA)n Simple_repeat Simple_repeat 2 27 0 4081 254 62 57 chr6 144891610 144891745 -44387809 + L1ME2 LINE L1 2085 2218 -4178 1768 231 108 25 chr6 144891727 144892423 -44387131 + L1ME2 LINE L1 5284 6045 -190 * 538 320 77 10 chr6 144892434 144892628 -44386926 + L2 LINE L2 2831 3037 -276 1218 280 71 15 chr6 144892671 144893135 -44386419 + MLT1F1 LTR MaLR 78 567 0 1108 84 19 26 chr6 144894083 144894238 -44385316 + AluSg/x SINE Alu 135 288 -24 2327 114 0 0 chr6 144895115 144895423 -44384131 + AluSx SINE Alu 1 308 -4 259 255 82 20 chr6 144895452 144895550 -44384004 + L2 LINE L2 3169 3272 0 238 258 45 0 chr6 144895822 144895888 -44383666 - MIR3 SINE MIR -25 183 115 2258 141 55 115 chr6 144896745 144897292 -44382262 - MLT2B2 LTR ERVL 0 515 2 231 368 21 0 chr6 144897675 144897770 -44381784 + L2 LINE L2 2530 2626 -688 198 407 44 19 chr6 144897819 144898089 -44381465 + L2 LINE L2 2831 3107 -165 286 268 49 70 chr6 144898327 144898469 -44381085 - MER91C DNA MER1_type -1 139 1 236 331 45 45 chr6 144899304 144899461 -44380093 - MIR SINE MIR -2 260 104 294 29 0 0 chr6 144900625 144900660 -44378894 + (TC)n Simple_repeat Simple_repeat 2 36 0 5081 51 6 0 chr6 144901054 144901683 -44377871 + L1PA8 LINE L1 5537 6169 -3 413 335 53 32 chr6 144902747 144903031 -44376523 + L1M4 LINE L1 4029 4318 -1828 2240 92 14 7 chr6 144903035 144903328 -44376226 + AluSg SINE Alu 1 295 -15 253 313 35 26 chr6 144903432 144903547 -44376007 - L2 LINE L2 -243 3070 2955 * 1050 325 244 11 chr6 144903546 144904633 -44374921 - L2 LINE L2 -591 2723 1336 390 42 0 0 chr6 144904633 144904681 -44374873 + (TG)n Simple_repeat Simple_repeat 2 49 0 1050 325 244 11 chr6 144904681 144904777 -44374777 - L2 LINE L2 -1978 1336 1264 262 217 0 0 chr6 144906027 144906073 -44373481 - MIR3 SINE MIR -51 157 112 507 368 20 12 chr6 144906074 144906327 -44373227 + MIR SINE MIR 2 256 -6 194 432 0 11 chr6 144906335 144906430 -44373124 - MIR3 SINE MIR -108 100 7 4754 29 0 0 chr6 144907212 144907766 -44371788 + L1PA3 LINE L1 5596 6149 -6 472 225 220 16 chr6 144907792 144907974 -44371580 - MIR SINE MIR -41 221 3 1959 126 28 83 chr6 144908669 144909066 -44370488 + THE1C LTR MaLR 1 375 0 8907 133 49 17 chr6 144909066 144910597 -44368957 + THE1C-int LTR MaLR 1 1580 0 1879 163 18 42 chr6 144910597 144910636 -44368918 + THE1C LTR MaLR 1 39 -336 2302 108 0 3 chr6 144910636 144910941 -44368613 - AluY SINE Alu -7 304 1 1879 163 18 42 chr6 144910941 144911281 -44368273 + THE1C LTR MaLR 39 371 -4 1713 193 100 52 chr6 144911719 144912201 -44367353 - MLT1D LTR MaLR 0 505 1 291 114 0 0 chr6 144912733 144912777 -44366777 + (GGGA)n Simple_repeat Simple_repeat 3 46 0 22 0 0 0 chr6 144913117 144913139 -44366415 + AT_rich Low_complexity Low_complexity 1 22 0 2175 129 0 0 chr6 144915277 144915579 -44363975 + AluSx SINE Alu 1 302 -10 307 239 148 0 chr6 144915710 144915852 -44363702 - L1ME4a LINE L1 -3 6118 5956 1843 148 0 36 chr6 144915980 144916283 -44363271 - AluSx SINE Alu -20 292 1 264 59 0 0 chr6 144916420 144916454 -44363100 + (A)n Simple_repeat Simple_repeat 1 34 0 277 231 0 0 chr6 144917229 144917281 -44362273 + L2 LINE L2 3221 3272 0 41121 48 5 2 chr6 144917680 144923814 -44355740 + L1PA4 LINE L1 1 6148 -7 5978 96 29 2 chr6 144925443 144926412 -44353142 + L1PA13 LINE L1 5169 6160 -3 2230 128 0 0 chr6 144926738 144927042 -44352512 + AluSx SINE Alu 3 306 -6 840 344 55 8 chr6 144927682 144928182 -44351372 + L2 LINE L2 2702 3228 -85 2665 46 0 0 chr6 144928713 144929018 -44350536 - AluY SINE Alu -6 305 1 335 354 31 8 chr6 144929164 144929294 -44350260 + MIR3 SINE MIR 6 138 -70 398 278 130 18 chr6 144930174 144930321 -44349233 - L1MC4a LINE L1 -11 6110 5981 315 0 0 0 chr6 144930321 144930356 -44349198 + (CA)n Simple_repeat Simple_repeat 2 36 0 398 278 130 18 chr6 144930356 144930545 -44349009 - L1MC4a LINE L1 -140 5981 5725 765 299 80 5 chr6 144930559 144930783 -44348771 + MIR SINE MIR 7 247 -15 240 374 0 12 chr6 144931523 144931606 -44347948 + MIR SINE MIR 25 106 -102 8089 74 5 10 chr6 144931888 144932965 -44346589 - MER11C LTR ERVK 0 1071 1 390 279 158 13 chr6 144933780 144933938 -44345616 - MER5A DNA MER1_type 0 189 9 26 0 0 0 chr6 144934534 144934560 -44344994 + AT_rich Low_complexity Low_complexity 1 26 0 286 292 242 0 chr6 144935186 144935306 -44344248 - MIR SINE MIR -57 205 57 23 68 0 0 chr6 144937047 144937091 -44342463 + GC_rich Low_complexity Low_complexity 1 44 0 353 282 5 85 chr6 144940350 144940538 -44339016 + MIR3 SINE MIR 4 176 -32 596 316 67 42 chr6 144941542 144941975 -44337579 - MLT1K LTR MaLR -4 584 141 453 254 27 0 chr6 144942947 144943057 -44336497 - MIR SINE MIR -147 115 3 413 264 10 83 chr6 144943543 144943736 -44335818 - MIR SINE MIR -52 210 32 258 281 74 30 chr6 144944873 144945008 -44334546 - L1ME4a LINE L1 -4 6117 5977 399 239 31 37 chr6 144945074 144945237 -44334317 - L1ME4a LINE L1 -269 5852 5691 371 245 20 0 chr6 144945310 144945412 -44334142 - L1ME4a LINE L1 -454 5667 5564 23 0 0 0 chr6 144945474 144945497 -44334057 + AT_rich Low_complexity Low_complexity 1 23 0 214 292 15 15 chr6 144945872 144945937 -44333617 + L2 LINE L2 3148 3212 -60 2261 102 0 34 chr6 144945995 144946318 -44333236 - AluSx SINE Alu 0 312 1 532 287 111 32 chr6 144947028 144947307 -44332247 - L2 LINE L2 -50 3263 2963 41 48 0 0 chr6 144947564 144947626 -44331928 + AT_rich Low_complexity Low_complexity 1 62 0 1856 146 0 47 chr6 144947877 144948178 -44331376 - AluSx SINE Alu -24 288 2 202 378 14 0 chr6 144948621 144948695 -44330859 - L2 LINE L2 0 3313 3239 1099 263 113 52 chr6 144949276 144949787 -44329767 - L2 LINE L2 0 3313 2738 2291 90 3 7 chr6 144950036 144950337 -44329217 + AluSg SINE Alu 1 300 -10 1683 176 74 37 chr6 144950401 144950781 -44328773 - MSTD LTR MaLR 0 396 3 2426 133 3 3 chr6 144950879 144951261 -44328293 - MER72 LTR ERV1 -33 689 308 590 271 164 23 chr6 144951274 144951584 -44327970 - L2 LINE L2 -951 2363 2010 1028 171 0 12 chr6 144952425 144952595 -44326959 + FRAM SINE Alu 1 160 -16 189 0 0 0 chr6 144953306 144953327 -44326227 + (TTG)n Simple_repeat Simple_repeat 1 21 0 262 331 60 4 chr6 144953708 144953872 -44325682 + MIR SINE MIR 64 241 -21 2011 152 0 7 chr6 144955430 144955740 -44323814 + AluSx SINE Alu 1 308 -4 1550 209 44 0 chr6 144955909 144956206 -44323348 - AluJo SINE Alu -2 310 1 2173 114 7 0 chr6 144958869 144959167 -44320387 - AluSx SINE Alu -12 300 1 284 202 294 8 chr6 144959750 144959869 -44319685 + L3b LINE CR1 1102 1254 -329 27 49 0 0 chr6 144960568 144960609 -44318945 + AT_rich Low_complexity Low_complexity 1 41 0 304 262 23 159 chr6 144960709 144960923 -44318631 - MIR3 SINE MIR -8 200 16 240 301 89 16 chr6 144962016 144962139 -44317415 + MIR SINE MIR 81 212 -50 851 200 118 0 chr6 144962460 144962655 -44316899 - MER20 DNA MER1_type -1 218 1 2544 71 0 3 chr6 144963326 144963637 -44315917 - AluY SINE Alu -1 310 1 461 282 101 7 chr6 144963651 144963822 -44315732 + MIR SINE MIR 27 213 -49 255 354 87 28 chr6 144964220 144964576 -44314978 + L2 LINE L2 2924 3300 -13 224 325 75 8 chr6 144966452 144966572 -44312982 - MIR3 SINE MIR 0 208 81 209 213 33 16 chr6 144968197 144968258 -44311296 + (TA)n Simple_repeat Simple_repeat 2 63 0 425 329 143 33 chr6 144968649 144968950 -44310604 - L1ME3A LINE L1 -302 5851 5518 293 274 104 25 chr6 144968973 144969214 -44310340 - L1ME3A LINE L1 -3648 2481 2222 43 35 0 0 chr6 144969452 144969509 -44310045 + AT_rich Low_complexity Low_complexity 1 57 0 4692 125 16 30 chr6 144969559 144970396 -44309158 - L1PA16 LINE L1 0 6166 5342 550 331 50 42 chr6 144970456 144970816 -44308738 - L1ME3A LINE L1 -4598 1712 1350 367 287 38 54 chr6 144970860 144971233 -44308321 - L1ME3A LINE L1 -4863 1256 852 33 25 0 0 chr6 144971249 144971289 -44308265 + AT_rich Low_complexity Low_complexity 1 40 0 2272 143 0 6 chr6 144971289 144971654 -44307900 - L1PB1 LINE L1 -8 6143 5781 240 184 0 0 chr6 144971654 144971703 -44307851 + (TA)n Simple_repeat Simple_repeat 1 49 0 1982 109 0 15 chr6 144971716 144972045 -44307509 - L1PB1 LINE L1 -369 5782 5459 229 214 51 41 chr6 144972654 144972752 -44306802 - L1ME3A LINE L1 -5976 143 45 379 288 124 0 chr6 144972804 144972957 -44306597 - L1ME4a LINE L1 -229 5892 5721 660 99 50 14 chr6 144972985 144973126 -44306428 + CT-rich Low_complexity Low_complexity 2 147 0 654 306 148 24 chr6 144973132 144973551 -44306003 - L1ME4a LINE L1 -2080 5728 5258 6275 83 34 11 chr6 144975264 144977032 -44302522 - L1PA13 LINE L1 -6 6157 4372 260 238 27 49 chr6 144978042 144978168 -44301386 - L1ME3A LINE L1 -219 5951 5822 260 313 123 80 chr6 144979566 144979866 -44299688 - L2 LINE L2 -3 3269 2957 621 254 113 66 chr6 144980428 144980854 -44298700 + LTR16B LTR ERVL 19 464 0 2234 122 3 0 chr6 144982481 144982776 -44296778 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr6 144982894 144982916 -44296638 + AT_rich Low_complexity Low_complexity 1 22 0 1918 228 277 34 chr6 144982948 144983902 -44295652 - L1MC4 LINE L1 -144 7898 6713 254 127 73 18 chr6 144984765 144984820 -44294734 + L2 LINE L2 2215 2272 -1042 223 167 48 0 chr6 144984885 144984927 -44294627 - L2 LINE L2 -979 2335 2292 528 286 285 45 chr6 144984928 144985504 -44294050 + L2 LINE L2 2264 2977 -337 2358 106 0 0 chr6 144985744 144986046 -44293508 + AluSx SINE Alu 1 302 -10 392 178 237 37 chr6 144986344 144986479 -44293075 - L2 LINE L2 -5 3308 3147 843 323 170 15 chr6 144987998 144988834 -44290720 + L2 LINE L2 2339 3312 -1 272 301 96 13 chr6 144990079 144990235 -44289319 - MIR SINE MIR -68 194 26 288 293 85 19 chr6 144990248 144990354 -44289200 + MIR SINE MIR 2 114 -148 5154 127 4 4 chr6 144990366 144991190 -44288364 - L1MA4A LINE L1 0 6303 5480 1512 161 31 86 chr6 144991370 144991756 -44287798 - MLT1A1 LTR MaLR 0 365 1 181 250 73 15 chr6 144991770 144991838 -44287716 + MIR SINE MIR 91 162 -100 1098 272 42 3 chr6 144991839 144992170 -44287384 - MLT1I LTR MaLR 0 409 66 781 253 21 11 chr6 144992695 144992881 -44286673 - MER5A DNA MER1_type 0 189 2 4087 142 38 39 chr6 144992989 144993105 -44286449 - L1MA9 LINE L1 -30 6282 6167 234 0 0 0 chr6 144993105 144993131 -44286423 + (TG)n Simple_repeat Simple_repeat 1 26 0 4087 142 38 39 chr6 144993131 144993866 -44285688 - L1MA9 LINE L1 -145 6167 5432 2072 142 7 0 chr6 144993866 144994161 -44285393 - AluSx SINE Alu -15 297 1 303 232 101 20 chr6 144994957 144995056 -44284498 - L1ME4a LINE L1 -241 5880 5774 21 36 0 0 chr6 144995622 144995650 -44283904 + AT_rich Low_complexity Low_complexity 1 28 0 279 298 197 27 chr6 144995806 144995994 -44283560 + MIR SINE MIR 37 256 -6 356 260 169 28 chr6 144997216 144997393 -44282161 + MIR SINE MIR 7 208 -54 596 274 77 54 chr6 144998932 144999322 -44280232 - L1ME4a LINE L1 -254 5867 5469 294 352 8 0 chr6 144999963 145000088 -44279466 + CT-rich Low_complexity Low_complexity 4 129 0 268 278 35 35 chr6 145000327 145000500 -44279054 + L1P LINE L1 4175 4347 -1799 1629 85 0 0 chr6 145000834 145001033 -44278521 + AluSx SINE Alu 1 199 -113 425 353 74 29 chr6 145001159 145001510 -44278044 + L1M4 LINE L1 4943 5309 -837 1871 167 58 6 chr6 145001640 145001987 -44277567 - MLT1A1 LTR MaLR 0 365 1 539 241 86 37 chr6 145004373 145004560 -44274994 - MIR SINE MIR -34 228 33 2439 80 0 3 chr6 145004731 145005032 -44274522 - AluSq SINE Alu -13 300 1 329 392 42 17 chr6 145005487 145005727 -44273827 + L2 LINE L2 2977 3222 -50 346 163 88 12 chr6 145005759 145005839 -44273715 - L2 LINE L2 -1 3312 3227 408 275 125 12 chr6 145005862 145006022 -44273532 + MIR3 SINE MIR 19 196 -12 211 378 169 14 chr6 145006540 145006743 -44272811 + L3 LINE CR1 177 347 -1230 750 175 0 36 chr6 145006743 145006880 -44272674 - FLAM_C SINE Alu -1 132 1 211 378 169 14 chr6 145006880 145007025 -44272529 + L3 LINE CR1 347 579 -998 659 282 68 28 chr6 145007120 145007372 -44272182 + L3 LINE CR1 574 835 -742 558 211 81 25 chr6 145007737 145007898 -44271656 + MIR SINE MIR 63 232 -30 185 292 15 0 chr6 145008024 145008089 -44271465 + L3 LINE CR1 842 907 -670 1763 163 12 35 chr6 145008227 145008546 -44271008 - AluJo SINE Alu 0 312 1 200 226 0 75 chr6 145010251 145010304 -44269250 - L2 LINE L2 -2 3311 3263 311 363 155 19 chr6 145010817 145011494 -44268060 - L2 LINE L2 -673 2641 1873 267 31 0 0 chr6 145011605 145011637 -44267917 + (TG)n Simple_repeat Simple_repeat 1 32 0 24 53 0 0 chr6 145011689 145011727 -44267827 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr6 145015475 145015510 -44264044 + AT_rich Low_complexity Low_complexity 1 35 0 579 160 64 70 chr6 145015675 145015831 -44263723 - MLT1B LTR MaLR -233 157 3 247 241 32 158 chr6 145015907 145016065 -44263489 + MIR3 SINE MIR 69 206 -2 2359 92 10 3 chr6 145016386 145016691 -44262863 - AluSq SINE Alu -6 307 1 1676 178 62 22 chr6 145017212 145017583 -44261971 - MLT1B LTR MaLR -4 386 1 920 97 8 2 chr6 145017783 145018043 -44261511 + AluSx SINE Alu 2 309 -1 208 225 0 0 chr6 145018909 145018949 -44260605 + GA-rich Low_complexity Low_complexity 4 43 0 25 0 0 0 chr6 145019250 145019275 -44260279 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr6 145019873 145019899 -44259655 + AT_rich Low_complexity Low_complexity 1 26 0 215 271 17 0 chr6 145020272 145020331 -44259223 + L2 LINE L2 3209 3268 -4 1199 275 139 15 chr6 145021769 145022235 -44257319 + L2 LINE L2 2004 2527 -787 276 360 40 0 chr6 145022468 145022568 -44256986 - L2 LINE L2 -13 3259 3156 234 91 0 0 chr6 145022953 145022986 -44256568 + (GAAAA)n Simple_repeat Simple_repeat 4 36 0 624 227 140 50 chr6 145023509 145023989 -44255565 - L1MC5 LINE L1 -178 7783 7261 4090 103 57 6 chr6 145026875 145027507 -44252047 - MER4A LTR ERV1 0 664 1 2304 92 0 32 chr6 145028117 145028433 -44251121 + AluSx SINE Alu 1 306 -6 195 184 0 0 chr6 145028641 145028679 -44250875 + CT-rich Low_complexity Low_complexity 1 38 0 2190 99 0 0 chr6 145028880 145029207 -44250347 - AluSx SINE Alu 0 327 1 336 250 23 11 chr6 145029763 145029851 -44249703 + MIR SINE MIR 111 199 -63 291 333 133 12 chr6 145030695 145030860 -44248694 - MER5A DNA MER1_type -3 186 2 1117 182 5 23 chr6 145030884 145031104 -44248450 + MER20 DNA MER1_type 3 218 -1 180 258 0 48 chr6 145031569 145031631 -44247923 - L2 LINE L2 -32 3240 3182 365 153 14 0 chr6 145032605 145032677 -44246877 + CT-rich Low_complexity Low_complexity 1 73 0 855 236 104 62 chr6 145033034 145033343 -44246211 + MLT2E LTR ERVL 1 322 -306 431 206 53 59 chr6 145033409 145033579 -44245975 + MLT2E LTR ERVL 458 626 -2 370 300 21 29 chr6 145033641 145033781 -44245773 - MIR3 SINE MIR -32 176 38 284 358 89 14 chr6 145034516 145034657 -44244897 + MIR3 SINE MIR 34 185 -23 242 196 5 0 chr6 145035036 145035105 -44244449 + MLT1J1 LTR MaLR 97 143 -303 440 285 136 55 chr6 145035958 145036193 -44243361 + MIR SINE MIR 2 255 -7 2161 160 64 17 chr6 145036401 145036808 -44242746 - MSTB LTR MaLR 0 426 1 455 0 18 0 chr6 145036828 145036883 -44242671 + (TG)n Simple_repeat Simple_repeat 1 56 0 391 326 10 41 chr6 145039239 145039435 -44240119 + L2 LINE L2 2685 2874 -440 1224 207 207 14 chr6 145039453 145039811 -44239743 - MER31B LTR ERV1 -39 427 1 334 232 0 14 chr6 145041602 145041671 -44237883 - MIR SINE MIR 0 262 195 186 43 0 0 chr6 145043813 145043836 -44235718 + (A)n Simple_repeat Simple_repeat 1 23 0 1521 212 114 68 chr6 145044372 145044933 -44234621 + MLT1E2 LTR MaLR 3 589 -35 181 352 19 0 chr6 145044973 145045027 -44234527 - L2 LINE L2 -9 3263 3209 231 36 0 0 chr6 145045028 145045056 -44234498 + (TG)n Simple_repeat Simple_repeat 1 28 0 1640 154 13 102 chr6 145045062 145045444 -44234110 - MER7A DNA MER2_type 0 346 1 1839 250 58 34 chr6 145045488 145046056 -44233498 - MLT2F LTR ERVL -72 591 10 2986 221 55 16 chr6 145046308 145047107 -44232447 - ERVL LTR ERVL -348 5416 4587 41503 47 1 2 chr6 145047110 145053262 -44226292 + L1PA4 LINE L1 4 6152 -3 2020 147 0 0 chr6 145053289 145053596 -44225958 + AluSc SINE Alu 3 309 0 3430 110 3 86 chr6 145053606 145054225 -44225329 + L1PA15 LINE L1 5593 6160 -5 1639 235 161 26 chr6 145054435 145055017 -44224537 - MLT2F LTR ERVL 0 663 3 285 311 43 46 chr6 145056400 145056555 -44222999 - MIR SINE MIR -68 140 18 182 257 0 0 chr6 145056572 145056607 -44222947 - L3 LINE CR1 -25 1552 1518 796 261 60 8 chr6 145056766 145057000 -44222554 - MIR SINE MIR -9 253 8 215 266 139 13 chr6 145058083 145058162 -44221392 + L2 LINE L2 3203 3291 -22 1092 233 56 51 chr6 145058164 145058555 -44220999 - LTR38 LTR ERV1 0 556 164 739 91 0 16 chr6 145058555 145058676 -44220878 + AluY SINE Alu 190 308 -3 2387 60 3 0 chr6 145058676 145058975 -44220579 + AluY SINE Alu 1 300 -11 440 259 0 0 chr6 145058975 145059087 -44220467 - LTR38 LTR ERV1 -381 175 64 6765 24 14 0 chr6 145059116 145059915 -44219639 + L1PA4 LINE L1 5343 6152 -3 24 0 0 0 chr6 145059915 145059939 -44219615 + AT_rich Low_complexity Low_complexity 1 24 0 462 120 11 0 chr6 145059982 145060074 -44219480 - Charlie5 DNA MER1_type -75 2537 2445 2365 66 41 0 chr6 145060078 145060396 -44219158 - L1PA7 LINE L1 -4 6150 5820 372 145 0 60 chr6 145060396 145060479 -44219075 - LTR38B LTR ERV1 -532 78 1 236 302 174 47 chr6 145061018 145061190 -44218364 + MIR SINE MIR 32 225 -37 8941 136 11 1 chr6 145062100 145064362 -44215192 - L1PA11 LINE L1 -2 6172 3906 1843 188 25 3 chr6 145064391 145064747 -44214807 - L1PA16 LINE L1 0 6166 5803 2352 103 0 0 chr6 145064968 145065268 -44214286 - AluSx SINE Alu -12 300 1 2715 231 45 23 chr6 145065487 145065583 -44213971 - L1ME2 LINE L1 -13 6431 6339 2130 112 0 54 chr6 145065583 145065897 -44213657 - AluSx SINE Alu -15 297 1 2715 231 45 23 chr6 145065897 145067564 -44211990 - L1ME2 LINE L1 -105 6339 4562 488 182 57 8 chr6 145067602 145067730 -44211824 - L1ME2 LINE L1 -4487 2023 1810 2049 156 3 0 chr6 145067730 145068031 -44211523 + AluJb SINE Alu 1 302 -10 26 62 0 15 chr6 145068175 145068191 -44211363 + AT_rich Low_complexity Low_complexity 1 16 -48 189 74 0 0 chr6 145068191 145068218 -44211336 + (TA)n Simple_repeat Simple_repeat 1 27 0 26 62 0 15 chr6 145068218 145068266 -44211288 + AT_rich Low_complexity Low_complexity 16 64 0 26 0 0 0 chr6 145068884 145068910 -44210644 + AT_rich Low_complexity Low_complexity 1 26 0 830 173 110 42 chr6 145070007 145070198 -44209356 - MER20 DNA MER1_type 0 219 16 227 232 125 48 chr6 145071793 145071961 -44207593 + L1ME LINE L1 5638 5818 -303 2326 99 16 3 chr6 145072073 145072376 -44207178 - AluSg SINE Alu -3 307 1 2210 138 0 0 chr6 145072974 145073278 -44206276 + AluSx SINE Alu 1 304 -8 316 202 266 0 chr6 145073708 145073802 -44205752 + MER5A DNA MER1_type 42 160 -29 351 255 143 51 chr6 145074013 145074229 -44205325 + L1ME LINE L1 5538 5773 -348 25 31 0 0 chr6 145074571 145074603 -44204951 + AT_rich Low_complexity Low_complexity 1 32 0 472 304 129 0 chr6 145074836 145075030 -44204524 + L3 LINE CR1 540 758 -819 5916 122 18 29 chr6 145075114 145076217 -44203337 + L1MA2 LINE L1 4195 5286 -1018 2722 10 0 0 chr6 145076217 145076517 -44203037 - AluYa5 SINE Alu -11 300 1 5916 122 18 29 chr6 145076517 145077430 -44202124 + L1MA2 LINE L1 5286 6207 -97 23 33 0 0 chr6 145077430 145077460 -44202094 + AT_rich Low_complexity Low_complexity 1 30 0 318 263 103 67 chr6 145077636 145078024 -44201530 + L1ME LINE L1 5309 5710 -411 537 278 35 0 chr6 145078048 145078192 -44201362 + MLT1A2 LTR MaLR 215 363 -11 231 152 0 0 chr6 145078218 145078264 -44201290 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 413 225 83 0 chr6 145078395 145078515 -44201039 - MIR SINE MIR 0 262 133 234 62 0 0 chr6 145078531 145078563 -44200991 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 2590 53 0 0 chr6 145078594 145078916 -44200638 - L1PA8 LINE L1 -1 6171 5850 1612 44 5 10 chr6 145080367 145080573 -44198981 - L1PA5 LINE L1 -3 6151 5947 362 308 122 77 chr6 145081444 145081540 -44198014 - L1M4 LINE L1 -3659 2487 2397 1991 221 121 71 chr6 145081540 145082327 -44197227 - LTR1B LTR ERV1 0 826 1 362 308 122 77 chr6 145082327 145082388 -44197166 - L1M4 LINE L1 -3749 2397 2340 1508 136 105 67 chr6 145082388 145082696 -44196858 + THE1C LTR MaLR 1 326 -49 2506 81 0 0 chr6 145082696 145083004 -44196550 + AluY SINE Alu 1 308 -3 1508 136 105 67 chr6 145083004 145083056 -44196498 + THE1C LTR MaLR 326 375 0 362 308 122 77 chr6 145083056 145083125 -44196429 - L1M4 LINE L1 -3806 2340 2255 189 264 35 46 chr6 145083201 145083288 -44196266 + MIR SINE MIR 171 256 -6 31 26 0 0 chr6 145084095 145084133 -44195421 + AT_rich Low_complexity Low_complexity 1 38 0 626 288 7 7 chr6 145084162 145084315 -44195239 - MIR3 SINE MIR -28 180 28 193 314 12 23 chr6 145084397 145084483 -44195071 + MIR SINE MIR 174 258 -4 939 294 25 25 chr6 145084768 145085241 -44194313 - L1ME3A LINE L1 -285 5885 5413 677 226 40 58 chr6 145085250 145085476 -44194078 - MER101 LTR ERV1 0 474 253 740 220 6 6 chr6 145085587 145085755 -44193799 - MER101 LTR ERV1 -296 178 11 600 293 94 64 chr6 145085765 145086266 -44193288 - L1ME3A LINE L1 -749 5397 4882 184 125 0 75 chr6 145086570 145086610 -44192944 + MIR SINE MIR 105 141 -67 2188 118 3 3 chr6 145087423 145087727 -44191827 + AluSx SINE Alu 1 304 -8 447 313 115 11 chr6 145087813 145087995 -44191559 - MIR SINE MIR -50 212 12 1921 155 137 13 chr6 145088204 145088585 -44190969 + MSTA LTR MaLR 1 428 0 446 293 32 0 chr6 145088687 145088810 -44190744 + L2 LINE L2 3185 3311 -2 209 353 10 39 chr6 145088844 145088946 -44190608 - MIR SINE MIR -116 146 48 2243 120 0 0 chr6 145090669 145090969 -44188585 + AluSx SINE Alu 3 302 -10 247 340 65 29 chr6 145091026 145091200 -44188354 - MIR SINE MIR -45 217 34 26 30 0 0 chr6 145091716 145091749 -44187805 + AT_rich Low_complexity Low_complexity 1 33 0 1922 200 55 44 chr6 145092222 145092771 -44186783 + MER74B LTR ERVL 58 612 -10 190 341 94 0 chr6 145092806 145092891 -44186663 + MIR3 SINE MIR 10 102 -106 1811 124 44 72 chr6 145093038 145093213 -44186341 - THE1B LTR MaLR -12 352 191 2156 81 4 0 chr6 145093213 145093486 -44186068 + AluY SINE Alu 37 310 -1 1811 124 44 72 chr6 145093486 145093672 -44185882 - THE1B LTR MaLR -173 191 1 25 0 0 0 chr6 145093681 145093706 -44185848 + AT_rich Low_complexity Low_complexity 1 25 0 319 322 27 20 chr6 145093790 145093936 -44185618 + MER5B DNA MER1_type 32 178 0 274 280 65 9 chr6 145094083 145094190 -44185364 - MIR SINE MIR -139 123 11 877 250 27 12 chr6 145094279 145094535 -44185019 - MIR SINE MIR -2 260 1 2141 113 0 13 chr6 145094699 145094999 -44184555 - AluSx SINE Alu -13 299 4 248 245 64 11 chr6 145095007 145095101 -44184453 - MLT1K LTR MaLR -8 580 482 232 308 218 6 chr6 145096079 145096235 -44183319 - MIR SINE MIR -14 248 60 519 275 139 55 chr6 145096235 145096505 -44183049 + LTR33A LTR ERVL 2 248 -275 495 209 76 19 chr6 145096505 145096610 -44182944 + MER81 DNA DNA 2 112 -2 519 275 139 55 chr6 145096610 145096808 -44182746 + LTR33A LTR ERVL 248 509 -14 213 309 0 0 chr6 145099274 145099329 -44180225 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 338 210 24 57 chr6 145099347 145099471 -44180083 + L1MC4 LINE L1 7922 8041 -1 727 287 85 59 chr6 145099578 145099812 -44179742 - HAL1b LINE L1 -570 778 552 2350 123 17 6 chr6 145099812 145100171 -44179383 - THE1B LTR MaLR 0 364 2 727 287 85 59 chr6 145100171 145100479 -44179075 - HAL1b LINE L1 -796 552 222 2366 134 13 13 chr6 145100552 145100950 -44178604 + MSTA LTR MaLR 1 399 -29 4769 146 54 7 chr6 145100952 145101858 -44177696 + L1PBa LINE L1 1 949 -5914 * 5627 220 26 16 chr6 145101856 145102075 -44177479 + L1 LINE L1 2714 2929 -3217 2143 112 3 10 chr6 145102075 145102370 -44177184 + AluSp SINE Alu 1 293 -20 5627 220 26 16 chr6 145102370 145103662 -44175892 + L1 LINE L1 2929 4241 -1905 393 105 0 0 chr6 145103662 145103719 -44175835 + MSTA LTR MaLR 372 428 0 308 331 59 7 chr6 145104205 145104341 -44175213 + MIR SINE MIR 104 246 -16 288 313 71 18 chr6 145104772 145104884 -44174670 + MIR SINE MIR 90 207 -55 275 410 60 0 chr6 145107392 145107592 -44171962 + MIR SINE MIR 49 260 -2 14522 176 27 9 chr6 145107910 145111942 -44167612 + L1PA12 LINE L1 667 4781 -2803 28558 33 1 2 chr6 145111942 145116353 -44163201 + L1PA4 LINE L1 1747 6154 -1 8885 185 5 5 chr6 145116357 145118130 -44161424 + L1PA12 LINE L1 4760 6532 -1052 486 299 118 23 chr6 145118186 145118832 -44160722 - L1M4 LINE L1 -1299 4847 4141 22 0 0 0 chr6 145119246 145119268 -44160286 + AT_rich Low_complexity Low_complexity 1 22 0 246 32 0 0 chr6 145119630 145119661 -44159893 + (GA)n Simple_repeat Simple_repeat 2 32 0 237 180 0 0 chr6 145119943 145119993 -44159561 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 227 286 0 0 chr6 145120303 145120359 -44159195 + MIR SINE MIR 70 125 -137 220 211 70 18 chr6 145121376 145121433 -44158121 + MIR3 SINE MIR 144 203 -5 333 269 58 10 chr6 145122514 145122618 -44156936 - L2 LINE L2 -10 3262 3154 1035 308 152 4 chr6 145124027 145124661 -44154893 + L2 LINE L2 2579 3310 -3 476 291 131 54 chr6 145124960 145125389 -44154165 - MLT1L LTR MaLR -12 603 142 243 358 135 39 chr6 145125429 145125993 -44153561 - L2 LINE L2 -436 2878 2261 255 152 0 0 chr6 145126315 145126361 -44153193 + A-rich Low_complexity Low_complexity 1 46 0 3455 139 12 2 chr6 145126765 145127325 -44152229 + L1PB3 LINE L1 5586 6151 -3 310 265 147 0 chr6 145128131 145128233 -44151321 - ERVL LTR ERVL -1061 4703 4587 41292 45 2 1 chr6 145128236 145134230 -44145324 + L1PA4 LINE L1 4 6004 -151 1769 129 21 11 chr6 145134330 145134616 -44144938 - MER1B DNA MER1_type -50 289 1 533 242 124 12 chr6 145134745 145134906 -44144648 - MIR SINE MIR -34 228 50 379 288 87 38 chr6 145135826 145136010 -44143544 - L3 LINE CR1 -75 1502 1310 278 267 175 17 chr6 145136612 145136732 -44142822 - MER5B DNA MER1_type -39 139 1 180 0 0 0 chr6 145138054 145138074 -44141480 + (TAA)n Simple_repeat Simple_repeat 2 21 0 327 143 22 11 chr6 145138617 145138631 -44140923 + (TA)n Simple_repeat Simple_repeat 2 14 -79 2136 138 0 0 chr6 145138631 145138928 -44140626 + AluSc SINE Alu 1 297 -12 327 143 22 11 chr6 145138928 145139004 -44140550 + (TA)n Simple_repeat Simple_repeat 14 93 0 1274 239 120 23 chr6 145139124 145139567 -44139987 + MLT1D LTR MaLR 12 497 -8 270 250 108 50 chr6 145139746 145139866 -44139688 - L2 LINE L2 -18 3295 3169 972 317 89 85 chr6 145140175 145141350 -44138204 - L2 LINE L2 -449 2865 1686 450 338 260 35 chr6 145141414 145141899 -44137655 - L3 LINE CR1 -1 1576 983 467 309 24 0 chr6 145142483 145142609 -44136945 - L2 LINE L2 -1 3312 3184 493 229 18 9 chr6 145143459 145143568 -44135986 - MER81 DNA DNA -1 113 4 644 237 53 12 chr6 145143579 145143748 -44135806 + MER45A DNA AcHobo 2 177 -1 417 306 118 22 chr6 145143758 145143987 -44135567 - MIR SINE MIR -10 252 2 201 39 0 0 chr6 145145309 145145335 -44134219 + (CA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr6 145145428 145145449 -44134105 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 145146798 145146820 -44132734 + AT_rich Low_complexity Low_complexity 1 22 0 312 27 0 0 chr6 145146822 145146859 -44132695 + (GA)n Simple_repeat Simple_repeat 2 38 0 766 203 57 0 chr6 145147573 145147750 -44131804 + MER5A DNA MER1_type 1 187 -2 1210 216 104 71 chr6 145147957 145148105 -44131449 - MLT1F LTR MaLR 0 593 451 2257 75 39 23 chr6 145148105 145148411 -44131143 + AluY SINE Alu 1 311 0 1210 216 104 71 chr6 145148411 145148759 -44130795 - MLT1F LTR MaLR -142 451 12 1920 99 85 3 chr6 145150855 145151138 -44128416 + AluSx SINE Alu 1 306 -6 271 252 100 28 chr6 145151464 145151782 -44127772 + LTR16A1 LTR ERVL 12 440 -10 350 336 104 55 chr6 145151807 145152173 -44127381 + L2 LINE L2 2922 3305 -8 2172 215 73 11 chr6 145152970 145153543 -44126011 + MER90 LTR ERV1 6 614 0 2084 126 7 13 chr6 145154511 145154813 -44124741 + AluSc SINE Alu 1 300 -9 713 274 28 39 chr6 145154824 145154911 -44124643 + MIR SINE MIR 2 89 -173 2173 168 7 55 chr6 145154911 145155327 -44124227 + MSTD LTR MaLR 1 396 0 713 274 28 39 chr6 145155327 145155494 -44124060 + MIR SINE MIR 89 253 -9 195 69 0 0 chr6 145155592 145155621 -44123933 + (TA)n Simple_repeat Simple_repeat 1 29 0 1613 177 23 34 chr6 145156154 145156331 -44123223 - MLT1A2 LTR MaLR -17 357 184 387 41 0 0 chr6 145156331 145156380 -44123174 + (CA)n Simple_repeat Simple_repeat 2 50 0 1613 177 23 34 chr6 145156380 145156553 -44123001 - MLT1A2 LTR MaLR -190 184 11 586 247 86 14 chr6 145156718 145156997 -44122557 - HsTC2 DNA Tc2 0 1900 1602 235 257 157 0 chr6 145157157 145157227 -44122327 - L2 LINE L2 -4 3268 3188 841 133 52 0 chr6 145157382 145157517 -44122037 + FRAM SINE Alu 21 162 -14 390 289 43 58 chr6 145157518 145157795 -44121759 - L1ME LINE L1 -477 5644 5372 318 208 52 19 chr6 145157799 145157953 -44121601 + (TA)n Simple_repeat Simple_repeat 2 160 0 518 303 74 17 chr6 145159689 145159920 -44119634 - MIR SINE MIR -14 248 5 1195 211 77 11 chr6 145159946 145160231 -44119323 - AluJo SINE Alu -5 307 4 212 217 22 0 chr6 145160339 145160385 -44119169 + MIR SINE MIR 77 123 -85 2431 96 59 3 chr6 145162400 145162755 -44116799 - THE1C LTR MaLR 0 375 1 491 138 0 11 chr6 145162755 145162849 -44116705 - THE1C-int LTR MaLR 0 1580 1488 2922 155 22 16 chr6 145162853 145163409 -44116145 - L1MC1 LINE L1 0 6333 5775 834 249 38 38 chr6 145163765 145164191 -44115363 - L1MC5 LINE L1 -29 7932 7507 239 243 40 0 chr6 145164202 145164276 -44115278 - L1ME1 LINE L1 -2 6164 6088 600 246 118 28 chr6 145164978 145165189 -44114365 + MIR SINE MIR 31 260 -2 2321 64 0 0 chr6 145165476 145165801 -44113753 - AluY SINE Alu 0 325 1 800 298 49 0 chr6 145165922 145166147 -44113407 - MIR SINE MIR -21 241 6 272 313 125 6 chr6 145166399 145166575 -44112979 - L3 LINE CR1 -865 712 516 186 133 0 0 chr6 145166643 145166673 -44112881 + L3 LINE CR1 840 869 -708 3801 210 54 49 chr6 145166769 145167825 -44111729 + L1MDb LINE L1 467 1541 -4865 2275 149 22 0 chr6 145167825 145168181 -44111373 - THE1B LTR MaLR 0 364 1 3801 210 54 49 chr6 145168181 145169050 -44110504 + L1MDb LINE L1 1541 2404 -4002 2140 105 42 65 chr6 145169081 145169482 -44110072 - L1MA2 LINE L1 -6 6298 5907 273 233 0 0 chr6 145169700 145169760 -44109794 + L1MD2 LINE L1 6189 6248 -111 14262 73 19 6 chr6 145171090 145173766 -44105788 + L1PA7 LINE L1 3437 6139 -15 452 241 54 78 chr6 145173862 145174028 -44105526 - L3 LINE CR1 -66 1511 1350 461 269 93 37 chr6 145174251 145174467 -44105087 - Charlie8 DNA MER1_type -2153 264 37 328 373 94 14 chr6 145174519 145174731 -44104823 - L3 LINE CR1 -321 1256 1028 559 69 9 138 chr6 145175195 145175311 -44104243 - HY3 scRNA scRNA 0 101 1 714 233 105 95 chr6 145175853 145176347 -44103207 + MLT1J LTR MaLR 5 503 -8 184 313 31 0 chr6 145176519 145176583 -44102971 + L2 LINE L2 3180 3245 -68 216 0 0 0 chr6 145179213 145179237 -44100317 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2457 124 40 26 chr6 145179347 145179775 -44099779 - Tigger2a DNA MER2_type 0 434 1 426 313 92 13 chr6 145180898 145181072 -44098482 - MIR SINE MIR -70 192 5 305 311 102 67 chr6 145182114 145182397 -44097157 - L2 LINE L2 -37 3235 2943 385 215 164 40 chr6 145183988 145184165 -44095389 + MLT1J1 LTR MaLR 6 151 -295 286 308 10 19 chr6 145185161 145185265 -44094289 + L2 LINE L2 2989 3091 -181 252 276 13 0 chr6 145185635 145185711 -44093843 + L1ME4a LINE L1 5669 5745 -376 1071 176 38 164 chr6 145185717 145186143 -44093411 - MLT1A2 LTR MaLR 0 374 3 398 303 37 67 chr6 145186145 145186442 -44093112 + L1ME4a LINE L1 5746 6033 -88 2163 93 3 30 chr6 145186466 145186766 -44092788 - AluSg SINE Alu -16 294 3 4854 72 28 8 chr6 145186811 145187465 -44092089 + PABL_B LTR ERV1 1 667 0 26 0 0 0 chr6 145188915 145188941 -44090613 + AT_rich Low_complexity Low_complexity 1 26 0 366 315 78 23 chr6 145189355 145189562 -44089992 + MIR SINE MIR 19 237 -25 649 286 109 11 chr6 145189687 145189970 -44089584 + MER46C DNA MER2_type 24 334 -4 4902 179 48 25 chr6 145190110 145192042 -44087512 - L1MA10 LINE L1 -2 6332 4360 2496 145 27 20 chr6 145192272 145192714 -44086840 + MER65A LTR ERV1 1 445 0 1679 157 91 0 chr6 145193309 145193595 -44085959 - AluJb SINE Alu 0 312 1 210 256 11 11 chr6 145195450 145195540 -44084014 + (TTA)n Simple_repeat Simple_repeat 3 92 0 399 288 121 27 chr6 145195624 145196030 -44083524 + L1ME4a LINE L1 5677 6120 -1 311 109 36 0 chr6 145197125 145197180 -44082374 + MADE1 DNA Mariner 24 80 0 3503 51 9 18 chr6 145198899 145199347 -44080207 + MLT2A1 LTR ERVL 1 444 0 429 262 41 0 chr6 145200090 145200212 -44079342 + L1ME3A LINE L1 6039 6165 -5 1360 209 124 3 chr6 145201442 145201773 -44077781 + MLT1A2 LTR MaLR 4 374 0 215 140 60 20 chr6 145201907 145201957 -44077597 + GA-rich Low_complexity Low_complexity 2 53 0 393 331 87 22 chr6 145202169 145202535 -44077019 + L1ME LINE L1 5254 5642 -528 206 32 32 0 chr6 145202657 145202688 -44076866 + (TA)n Simple_repeat Simple_repeat 1 32 0 26 0 0 0 chr6 145202795 145202821 -44076733 + AT_rich Low_complexity Low_complexity 1 26 0 10947 107 5 23 chr6 145204256 145206001 -44073553 + L1P LINE L1 2188 3900 -2246 1377 62 0 11 chr6 145206143 145206322 -44073232 - AluY SINE Alu -3 308 132 441 248 0 0 chr6 145207027 145207128 -44072426 - MIR SINE MIR -12 250 150 9844 98 8 0 chr6 145207229 145207585 -44071969 + L1PA8 LINE L1 3909 4261 -1911 2808 13 0 3 chr6 145207585 145207895 -44071659 - AluY SINE Alu -2 309 1 9844 98 8 0 chr6 145207895 145209799 -44069755 + L1PA8 LINE L1 4261 6169 -3 203 118 39 39 chr6 145210001 145210052 -44069502 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 23 54 0 0 chr6 145210579 145210616 -44068938 + AT_rich Low_complexity Low_complexity 1 37 0 2113 134 44 16 chr6 145211704 145212069 -44067485 - THE1C LTR MaLR 0 375 1 1011 281 116 7 chr6 145212476 145212924 -44066630 - L1ME3A LINE L1 -188 5982 5486 831 277 43 23 chr6 145212930 145213323 -44066231 - L1ME3A LINE L1 -861 5285 4885 1378 243 48 18 chr6 145213343 145213789 -44065765 - MLT1C LTR MaLR -2 465 1 6600 123 30 15 chr6 145213808 145214861 -44064693 - MER11C LTR ERVK -2 1069 1 433 265 82 14 chr6 145215279 145215426 -44064128 - MIR3 SINE MIR -21 187 31 435 289 58 0 chr6 145215518 145215639 -44063915 - FLAM_A SINE Alu -3 130 3 198 103 0 0 chr6 145217053 145217082 -44062472 + (TA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr6 145217183 145217207 -44062347 + AT_rich Low_complexity Low_complexity 1 24 0 227 266 181 0 chr6 145217631 145217725 -44061829 - MIR SINE MIR -42 220 110 380 352 22 28 chr6 145217981 145218160 -44061394 + MIR SINE MIR 2 179 -83 1045 325 43 16 chr6 145219316 145219805 -44059749 + LTR33 LTR ERVL 12 513 -8 2212 171 48 10 chr6 145220144 145220559 -44058995 - MSTB1 LTR MaLR 0 432 2 1990 138 14 0 chr6 145220606 145220896 -44058658 + AluSg SINE Alu 1 294 -16 218 344 102 8 chr6 145221155 145221283 -44058271 + L2 LINE L2 3133 3272 0 451 198 242 13 chr6 145221856 145222013 -44057541 - MIR SINE MIR -33 229 37 783 191 101 26 chr6 145222528 145222717 -44056837 - MLT1C LTR MaLR -256 211 9 25 31 0 0 chr6 145223602 145223634 -44055920 + AT_rich Low_complexity Low_complexity 1 32 0 374 316 110 7 chr6 145224717 145224871 -44054683 + MIR3 SINE MIR 14 184 -24 1536 121 8 0 chr6 145225461 145225710 -44053844 + L1MA2 LINE L1 6054 6304 0 2051 189 70 33 chr6 145225814 145226301 -44053253 - MLT1D LTR MaLR 0 505 1 234 0 0 0 chr6 145226534 145226560 -44052994 + (TA)n Simple_repeat Simple_repeat 2 27 0 2171 70 0 11 chr6 145227834 145228120 -44051434 - AluY SINE Alu -1 310 28 605 245 26 0 chr6 145228126 145228277 -44051277 - L1MA10 LINE L1 0 6334 6180 187 346 23 23 chr6 145228634 145228764 -44050790 + L2 LINE L2 1797 1926 -1388 1097 128 22 0 chr6 145228999 145229179 -44050375 + L1MA5 LINE L1 6115 6298 -2 23 33 0 0 chr6 145229238 145229268 -44050286 + AT_rich Low_complexity Low_complexity 1 30 0 2452 133 56 22 chr6 145229377 145229789 -44049765 + MSTA LTR MaLR 3 428 0 21 57 0 0 chr6 145231294 145231329 -44048225 + AT_rich Low_complexity Low_complexity 1 35 0 1713 181 0 20 chr6 145231781 145232080 -44047474 - AluJo SINE Alu -17 295 3 337 314 32 16 chr6 145232104 145232228 -44047326 + L1MC4 LINE L1 6580 6705 -1337 300 254 76 25 chr6 145232139 145232257 -44047297 - L1MC4 LINE L1 -1336 6706 6583 * 22 56 0 0 chr6 145232450 145232486 -44047068 + AT_rich Low_complexity Low_complexity 1 36 0 282 302 16 70 chr6 145232925 145233054 -44046500 + L2 LINE L2 3192 3313 0 389 95 16 0 chr6 145234004 145234067 -44045487 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 299 230 20 70 chr6 145234138 145234238 -44045316 + MIR SINE MIR 8 102 -160 291 296 80 11 chr6 145234554 145234642 -44044912 + L2 LINE L2 3154 3247 -25 933 107 0 0 chr6 145234656 145234796 -44044758 + (GGAA)n Simple_repeat Simple_repeat 2 141 0 237 315 62 31 chr6 145235038 145235200 -44044354 - MER112 DNA MER1_type -4 256 90 225 0 0 0 chr6 145235208 145235233 -44044321 + (TG)n Simple_repeat Simple_repeat 2 26 0 2950 169 22 11 chr6 145236169 145236709 -44042845 + MER89 LTR ERV1 13 558 -1 1161 209 117 11 chr6 145236888 145237161 -44042393 + AluJo SINE Alu 1 302 0 250 118 0 0 chr6 145237161 145237195 -44042359 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 1134 79 26 4 chr6 145237195 145237439 -44042115 + (GAAA)n Simple_repeat Simple_repeat 1 249 0 25 0 0 0 chr6 145237763 145237788 -44041766 + AT_rich Low_complexity Low_complexity 1 25 0 4690 143 26 28 chr6 145238351 145239267 -44040287 + L1MA4 LINE L1 5386 6299 -1 241 325 79 18 chr6 145240072 145240186 -44039368 + L2 LINE L2 2934 3054 -218 200 163 23 0 chr6 145240350 145240393 -44039161 + GA-rich Low_complexity Low_complexity 2 45 0 1801 230 76 63 chr6 145241455 145242086 -44037468 + MLT1E1 LTR MaLR 8 646 -8 3107 213 108 15 chr6 145242279 145243138 -44036416 + Charlie1a DNA MER1_type 38 976 -479 3669 133 116 54 chr6 145243139 145243957 -44035597 + L1MA9 LINE L1 5283 6151 -161 228 67 0 0 chr6 145243957 145243987 -44035567 + (CA)n Simple_repeat Simple_repeat 1 30 0 1696 198 33 61 chr6 145244017 145244527 -44035027 + Charlie1a DNA MER1_type 960 1455 0 1477 178 53 27 chr6 145246070 145246408 -44033146 + MLT1B LTR MaLR 1 347 -43 304 239 109 72 chr6 145247025 145247163 -44032391 + HAL1 LINE L1 900 1042 -1465 1040 266 18 56 chr6 145247172 145247373 -44032181 - MLT1E LTR MaLR 0 593 386 1782 115 4 4 chr6 145247373 145247617 -44031937 + AluSx SINE Alu 41 284 -28 303 93 0 0 chr6 145247620 145247663 -44031891 + (CATA)n Simple_repeat Simple_repeat 4 46 0 1040 266 18 56 chr6 145247663 145247796 -44031758 - MLT1E LTR MaLR -209 384 268 321 192 212 20 chr6 145247965 145248064 -44031490 - MLT1E LTR MaLR -475 118 1 425 247 63 79 chr6 145248381 145248521 -44031033 + MIR SINE MIR 69 207 -55 2851 156 6 60 chr6 145248521 145249067 -44030487 + MLT2B1 LTR ERVL 5 520 0 425 247 63 79 chr6 145249067 145249116 -44030438 + MIR SINE MIR 207 255 -7 1821 104 29 39 chr6 145249785 145250064 -44029490 - AluSx SINE Alu 0 312 37 22 80 0 0 chr6 145250787 145250837 -44028717 + AT_rich Low_complexity Low_complexity 1 50 0 2194 97 0 7 chr6 145251908 145252207 -44027347 + AluSg SINE Alu 1 297 -13 279 0 0 0 chr6 145252490 145252521 -44027033 + (CA)n Simple_repeat Simple_repeat 2 32 0 540 258 0 0 chr6 145253577 145253755 -44025799 + (TG)n Simple_repeat Simple_repeat 1 178 0 2099 75 4 0 chr6 145254273 145254559 -44024995 + AluSp SINE Alu 30 316 0 2213 270 130 28 chr6 145254648 145255743 -44023811 - L2 LINE L2 0 3313 2112 208 259 86 62 chr6 145255725 145255806 -44023748 + L3 LINE CR1 385 467 -1110 * 189 74 0 0 chr6 145256163 145256190 -44023364 + (A)n Simple_repeat Simple_repeat 1 27 0 1590 177 60 12 chr6 145256403 145256736 -44022818 - MLT1A1 LTR MaLR -16 349 1 256 238 0 16 chr6 145257576 145257639 -44021915 + (TA)n Simple_repeat Simple_repeat 1 62 0 487 228 276 0 chr6 145257644 145257767 -44021787 - MIR SINE MIR -99 163 7 4655 153 80 1 chr6 145257908 145258836 -44020718 - L1MA8 LINE L1 -3 6288 5288 408 155 119 0 chr6 145260477 145260561 -44018993 + L1PA15-16 LINE L1 144 237 -6612 4623 245 48 6 chr6 145260679 145262201 -44017353 + L1P LINE L1 2191 3776 -2370 2190 126 0 0 chr6 145262365 145262667 -44016887 + AluSg SINE Alu 1 302 -8 316 275 184 0 chr6 145262743 145262852 -44016702 + MIR SINE MIR 27 155 -107 1994 112 60 35 chr6 145264314 145264680 -44014874 + THE1C LTR MaLR 1 375 0 240 225 157 22 chr6 145264730 145264819 -44014735 + L2 LINE L2 3171 3271 -1 452 222 170 7 chr6 145266917 145267052 -44012502 + MIR SINE MIR 29 185 -77 195 329 0 14 chr6 145267094 145267164 -44012390 + MIR SINE MIR 192 260 -2 23 54 0 0 chr6 145268153 145268190 -44011364 + AT_rich Low_complexity Low_complexity 1 37 0 28 61 0 0 chr6 145268564 145268613 -44010941 + AT_rich Low_complexity Low_complexity 1 49 0 386 347 129 0 chr6 145269122 145269347 -44010207 + MIR SINE MIR 3 256 -6 460 310 71 73 chr6 145269579 145270128 -44009426 + LTR67 LTR ERVL 3 550 -7 981 174 53 0 chr6 145270434 145270624 -44008930 + L1PA16 LINE L1 5962 6161 -5 29012 116 10 55 chr6 145270639 145277088 -44002466 + L1PA7 LINE L1 10 6152 -2 570 144 0 0 chr6 145277506 145277610 -44001944 + L1MA9 LINE L1 5146 5249 -897 2405 157 30 34 chr6 145277632 145277760 -44001794 + L1MA9 LINE L1 5782 5909 -403 2254 153 75 2 chr6 145277760 145278159 -44001395 - MSTB1 LTR MaLR 0 432 5 2405 157 30 34 chr6 145278159 145278558 -44000996 + L1MA9 LINE L1 5909 6307 -5 321 249 74 8 chr6 145279656 145279830 -43999724 + MLT1L LTR MaLR 391 605 -8 305 212 88 0 chr6 145280003 145280135 -43999419 - MER113 DNA MER1_type? -303 218 75 1529 214 25 72 chr6 145280135 145280389 -43999165 - MLT1C LTR MaLR -2 465 243 303 28 0 0 chr6 145280389 145280425 -43999129 + (TG)n Simple_repeat Simple_repeat 2 37 0 1529 214 25 72 chr6 145280425 145280656 -43998898 - MLT1C LTR MaLR -224 243 3 1711 128 58 50 chr6 145281104 145281164 -43998390 - MER7A DNA MER2_type -2693 345 287 3619 56 0 2 chr6 145281164 145281613 -43997941 + LTR7 LTR ERV1 1 448 -2 1711 128 58 50 chr6 145281613 145281895 -43997659 - MER7A DNA MER2_type -2751 287 2 706 262 13 39 chr6 145282906 145283135 -43996419 + MER58A DNA MER1_type 1 223 -1 934 266 38 1 chr6 145283687 145283931 -43995623 - MIR SINE MIR -2 260 9 298 350 61 61 chr6 145284128 145284374 -43995180 - L2 LINE L2 -835 2479 2234 216 325 19 106 chr6 145286433 145286593 -43992961 + L2 LINE L2 3039 3184 -88 1353 187 83 85 chr6 145286683 145287143 -43992411 + MLT1C LTR MaLR 7 465 -2 303 292 104 52 chr6 145287330 145287511 -43992043 + L2 LINE L2 2995 3194 -119 5960 97 20 19 chr6 145287511 145288542 -43991012 + L1PA11 LINE L1 5136 6172 -2 303 292 104 52 chr6 145288542 145288610 -43990944 + L2 LINE L2 3194 3257 -56 856 256 192 32 chr6 145289353 145289790 -43989764 + MLT1H LTR MaLR 41 547 -2 2487 81 0 0 chr6 145290279 145290587 -43988967 + AluY SINE Alu 1 308 -3 2185 113 0 0 chr6 145290704 145291015 -43988539 + AluSx SINE Alu 1 311 0 210 365 0 21 chr6 145291686 145291782 -43987772 + GA-rich Low_complexity Low_complexity 1 94 0 243 273 15 0 chr6 145292617 145292683 -43986871 + MIR SINE MIR 183 249 -13 725 214 34 17 chr6 145293557 145293735 -43985819 - MER63A DNA MER1_type -28 182 2 273 309 88 15 chr6 145294850 145294986 -43984568 + MLT1H LTR MaLR 1 146 -403 281 262 65 28 chr6 145295138 145295245 -43984309 + MLT1H LTR MaLR 439 549 0 1315 202 151 39 chr6 145296195 145296606 -43982948 - MSTB2 LTR MaLR 0 457 1 800 290 14 5 chr6 145296697 145296911 -43982643 - MIR SINE MIR -45 217 2 229 219 31 31 chr6 145297033 145297097 -43982457 + THE1B LTR MaLR 202 265 -99 302 51 0 0 chr6 145297137 145297176 -43982378 + L1P3 LINE L1 6 44 -6417 10992 84 6 0 chr6 145297179 145299558 -43979996 + L1PA7 LINE L1 3807 6183 0 24 32 0 0 chr6 145299650 145299681 -43979873 + AT_rich Low_complexity Low_complexity 1 31 0 356 261 92 0 chr6 145299714 145299867 -43979687 - L1M4 LINE L1 -2369 3777 3611 442 292 49 32 chr6 145299899 145300178 -43979376 - L2 LINE L2 -26 3287 2938 1550 158 3 34 chr6 145300478 145300769 -43978785 + MER65A LTR ERV1 1 282 -163 210 23 45 45 chr6 145300930 145300974 -43978580 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 349 283 3 133 chr6 145301061 145301207 -43978347 + L2 LINE L2 2002 2091 -1223 2001 148 3 0 chr6 145301207 145301497 -43978057 - AluJb SINE Alu -21 291 1 349 283 3 133 chr6 145301497 145301650 -43977904 + L2 LINE L2 2091 2262 -1052 227 240 0 0 chr6 145301650 145301700 -43977854 + MER45 DNA AcHobo 1532 1581 0 1053 206 124 1 chr6 145301739 145302062 -43977492 - MER93a LTR ERV1 0 402 1 196 364 13 26 chr6 145302788 145302865 -43976689 + MIR SINE MIR 20 95 -113 188 291 55 0 chr6 145302882 145302937 -43976617 - MIR SINE MIR -66 142 85 2564 141 16 22 chr6 145303490 145303937 -43975617 + MER65A LTR ERV1 1 444 -1 243 0 0 0 chr6 145304386 145304413 -43975141 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2239 117 0 0 chr6 145304417 145304715 -43974839 - AluSx SINE Alu -14 298 1 2024 145 14 0 chr6 145306298 145306588 -43972966 - AluSx SINE Alu -18 294 1 1904 136 52 35 chr6 145306829 145307198 -43972356 - THE1C LTR MaLR 0 375 1 373 89 25 101 chr6 145307671 145307750 -43971804 + L1MA8 LINE L1 5705 5777 -523 330 191 22 22 chr6 145307760 145307938 -43971616 + (TA)n Simple_repeat Simple_repeat 2 179 0 1453 121 11 46 chr6 145307948 145308229 -43971325 + L1MA8 LINE L1 5794 6064 -227 3000 156 29 7 chr6 145308229 145308814 -43970740 - L1MA4 LINE L1 -7 6293 5696 380 277 34 7 chr6 145308823 145309022 -43970532 - L1MEc LINE L1 -5336 782 532 431 239 0 0 chr6 145309160 145309273 -43970281 - L1MB8 LINE L1 -2 6176 6064 1927 146 3 3 chr6 145309299 145309594 -43969960 - AluJo SINE Alu -4 308 14 2368 119 32 10 chr6 145309599 145310010 -43969544 - L1MB3 LINE L1 0 6183 5764 807 211 10 10 chr6 145310021 145310215 -43969339 - L1ME1 LINE L1 -114 6052 5859 246 186 0 93 chr6 145310449 145310535 -43969019 - L1MEc LINE L1 -5673 397 320 472 312 7 0 chr6 145310657 145310811 -43968743 - L1MEc LINE L1 -5905 165 11 332 222 49 0 chr6 145311103 145311184 -43968370 - MIR SINE MIR -3 259 175 325 202 0 58 chr6 145311886 145311990 -43967564 + L1ME4a LINE L1 5973 6070 -51 180 333 0 0 chr6 145312254 145312302 -43967252 + L2 LINE L2 3266 3313 0 1986 128 3 3 chr6 145313277 145313565 -43965989 + AluSx SINE Alu 1 288 -24 583 286 38 29 chr6 145313575 145313785 -43965769 + MIR SINE MIR 4 215 -47 1360 213 38 11 chr6 145315277 145315564 -43963990 - AluJo SINE Alu -6 306 12 210 37 0 0 chr6 145315586 145315613 -43963941 + (TTGG)n Simple_repeat Simple_repeat 1 27 0 1990 150 0 0 chr6 145315613 145315894 -43963660 - AluSx SINE Alu -31 281 1 1407 201 7 56 chr6 145316047 145316350 -43963204 + AluJo SINE Alu 1 288 -24 288 0 0 0 chr6 145317041 145317073 -43962481 + (TG)n Simple_repeat Simple_repeat 2 33 0 293 232 148 13 chr6 145317164 145317319 -43962235 - L1ME4a LINE L1 -3 6118 5943 346 323 73 36 chr6 145318043 145318235 -43961319 - HAL1b LINE L1 -811 537 339 1485 246 132 93 chr6 145318302 145319334 -43960220 - MER52A LTR ERV1 -10 1745 1 1761 160 3 40 chr6 145319928 145320228 -43959326 - AluJo SINE Alu -20 292 4 1671 191 27 3 chr6 145320944 145321279 -43958275 + MER2 DNA MER2_type 2 344 0 201 189 0 0 chr6 145322860 145322897 -43956657 + L2 LINE L2 3272 3308 -5 240 248 111 17 chr6 145323141 145323258 -43956296 + L1ME4a LINE L1 5991 6118 -3 1607 179 38 7 chr6 145323533 145323824 -43955730 - AluSx SINE Alu -12 300 1 226 320 106 0 chr6 145324425 145324557 -43954997 + MIR SINE MIR 19 164 -44 1213 176 63 151 chr6 145325359 145325835 -43953719 + MLT1F1 LTR MaLR 2 435 -132 1027 244 48 90 chr6 145327142 145327708 -43951846 + MER34 LTR ERV1 1 542 0 348 362 20 20 chr6 145328369 145328521 -43951033 - MIR SINE MIR -12 250 99 1309 119 13 4 chr6 145328673 145328900 -43950654 - L1MA8 LINE L1 -6 6285 6057 3352 151 30 17 chr6 145328900 145329491 -43950063 + L1M4c LINE L1 1 599 -4729 386 153 14 14 chr6 145329492 145329564 -43949990 + L1M4c LINE L1 633 704 -4624 3020 167 28 13 chr6 145329573 145330191 -43949363 + L1MA4 LINE L1 5655 6281 -19 545 304 46 35 chr6 145330218 145330672 -43948882 + L1M4c LINE L1 1070 1528 -4802 2028 162 0 3 chr6 145330781 145331089 -43948465 + AluSx SINE Alu 1 307 -5 2163 100 49 26 chr6 145331185 145331535 -43948019 - THE1B LTR MaLR -6 358 1 1723 92 23 0 chr6 145331535 145331796 -43947758 + L1MA1 LINE L1 6029 6295 -7 2252 100 3 7 chr6 145331888 145332187 -43947367 - AluSx SINE Alu -14 298 1 1387 184 28 0 chr6 145335623 145335878 -43943676 - Tigger3(Golem) DNA MER2_type -2767 262 1 406 219 0 0 chr6 145336376 145336458 -43943096 - Tigger5 DNA MER2_type 0 2323 2242 380 224 0 0 chr6 145336448 145336524 -43943030 + Tigger5 DNA MER2_type 2242 2317 -6 * 420 215 0 0 chr6 145336526 145336605 -43942949 - Tigger5 DNA MER2_type -2244 79 1 2191 41 44 11 chr6 145336610 145336910 -43942644 - AluY SINE Alu 0 309 1 870 269 34 63 chr6 145336929 145337163 -43942391 + LTR16B LTR ERVL 5 227 -237 2205 153 11 19 chr6 145337163 145337541 -43942013 - THE1C LTR MaLR 0 375 1 870 269 34 63 chr6 145337541 145337656 -43941898 + LTR16B LTR ERVL 227 344 -120 663 158 40 164 chr6 145337668 145338022 -43941532 - MER33 DNA MER1_type -14 310 1 313 264 0 28 chr6 145338037 145338143 -43941411 + LTR16B LTR ERVL 362 464 0 264 376 69 20 chr6 145338207 145338454 -43941100 + L2 LINE L2 2716 2974 -340 21 0 0 0 chr6 145338516 145338537 -43941017 + AT_rich Low_complexity Low_complexity 1 21 0 1497 129 79 85 chr6 145338644 145338985 -43940569 + MER44D DNA MER2_type 1 609 0 2725 138 0 34 chr6 145339065 145339537 -43940017 + MLT2C2 LTR ERVL 1 456 -8 2676 129 54 31 chr6 145339875 145340354 -43939200 - LTR2B LTR ERV1 0 490 1 5110 161 26 28 chr6 145340817 145341891 -43937663 + L1MC1 LINE L1 5254 6325 -8 377 268 16 0 chr6 145342675 145342798 -43936756 - MER94 DNA DNA -5 129 5 2088 150 37 35 chr6 145342802 145343348 -43936206 + MLT2A2 LTR ERVL 5 554 0 422 167 0 0 chr6 145343436 145343520 -43936034 - MLT2B1 LTR ERVL 0 520 437 486 313 60 72 chr6 145343520 145343785 -43935769 + L3 LINE CR1 888 1149 -428 306 348 119 10 chr6 145343844 145344045 -43935509 + L3 LINE CR1 1338 1560 -17 1444 222 83 23 chr6 145344650 145345082 -43934472 + LTR40c LTR ERVL 3 460 -5 392 315 212 39 chr6 145345779 145346166 -43933388 - L2 LINE L2 -7 3306 2853 2302 147 32 27 chr6 145346533 145346599 -43932955 - Tigger2 DNA MER2_type -1 2717 2653 1924 116 65 0 chr6 145346599 145346875 -43932679 + AluSx SINE Alu 1 294 -18 2302 147 32 27 chr6 145346875 145347251 -43932303 - Tigger2 DNA MER2_type -65 2653 2273 440 113 0 0 chr6 145347249 145347311 -43932243 + MER8 DNA MER2_type 178 239 0 * 26 50 0 0 chr6 145347727 145347767 -43931787 + AT_rich Low_complexity Low_complexity 1 40 0 274 293 121 19 chr6 145349082 145349239 -43930315 - L2 LINE L2 -955 2359 2187 1524 163 44 30 chr6 145350494 145350789 -43928765 + AluJo SINE Alu 1 299 -13 311 197 165 16 chr6 145351354 145351481 -43928073 - MLT1J LTR MaLR -79 432 287 2076 170 75 8 chr6 145351574 145351975 -43927579 + MSTA LTR MaLR 1 428 0 1999 150 0 0 chr6 145352153 145352446 -43927108 + AluSx SINE Alu 1 293 -19 1936 114 78 31 chr6 145353573 145353931 -43925623 + THE1C LTR MaLR 1 375 0 1115 229 53 12 chr6 145354550 145354869 -43924685 + MLT1C LTR MaLR 136 467 0 199 250 196 27 chr6 145354871 145355019 -43924535 - L2 LINE L2 -100 3213 3041 1074 174 26 87 chr6 145355140 145355405 -43924149 - AluJb SINE Alu -17 295 47 3844 149 18 10 chr6 145355416 145356122 -43923432 - L1MA4 LINE L1 0 6300 5589 25 0 0 0 chr6 145356240 145356265 -43923289 + AT_rich Low_complexity Low_complexity 1 25 0 635 270 94 3 chr6 145356571 145357000 -43922554 - L2 LINE L2 -5 3308 2747 183 80 0 0 chr6 145357434 145357459 -43922095 + (A)n Simple_repeat Simple_repeat 1 25 0 565 89 0 0 chr6 145357946 145358025 -43921529 + MADE1 DNA Mariner 1 79 -1 293 356 48 0 chr6 145358447 145358551 -43921003 + MER91C DNA MER1_type 31 139 -1 1035 94 0 0 chr6 145358700 145358838 -43920716 + AluSg/x SINE Alu 164 301 -9 481 296 67 38 chr6 145358996 145359236 -43920318 + L2 LINE L2 2804 3050 -222 284 311 19 19 chr6 145360289 145360395 -43919159 + MIR3 SINE MIR 76 181 -27 2152 85 4 0 chr6 145360478 145360749 -43918805 - AluY SINE Alu -12 299 28 256 355 102 28 chr6 145363011 145363335 -43916219 + L2 LINE L2 2630 2977 -337 3013 161 37 15 chr6 145363414 145363960 -43915594 - MER74A LTR ERVL 0 558 1 3048 83 22 20 chr6 145365153 145365600 -43913954 - LTR7 LTR ERV1 -2 448 1 1646 158 76 0 chr6 145366092 145366226 -43913328 - L1MA9 LINE L1 -3 6309 6187 243 0 0 0 chr6 145366226 145366253 -43913301 + (TG)n Simple_repeat Simple_repeat 2 28 0 1646 158 76 0 chr6 145366253 145366448 -43913106 - L1MA9 LINE L1 -125 6187 5955 262 277 12 0 chr6 145366458 145366541 -43913013 - MER41C LTR ERV1 -85 469 386 7855 167 16 52 chr6 145366551 145369107 -43910447 - L1MA9 LINE L1 -348 5964 3507 4393 191 28 3 chr6 145369122 145369824 -43909730 - L1MB3 LINE L1 -4 6179 5496 288 0 0 0 chr6 145369824 145369856 -43909698 + (TG)n Simple_repeat Simple_repeat 1 32 0 4393 191 28 3 chr6 145369856 145370764 -43908790 - L1MB3 LINE L1 -687 5496 4534 318 106 0 0 chr6 145370787 145370834 -43908720 + (CGG)n Simple_repeat Simple_repeat 2 48 0 7290 68 12 18 chr6 145371145 145372643 -43906911 + SVA Other Other 217 1386 0 5977 222 32 32 chr6 145372644 145374564 -43904990 - L1MB3 LINE L1 -1598 4548 2629 23 0 0 0 chr6 145374713 145374736 -43904818 + AT_rich Low_complexity Low_complexity 1 23 0 238 306 166 45 chr6 145375601 145375758 -43903796 - MER5B DNA MER1_type -2 176 1 623 302 78 18 chr6 145375884 145376271 -43903283 + L1ME1 LINE L1 37 446 -5950 3123 210 65 60 chr6 145376339 145377471 -43902083 + L1ME1 LINE L1 4181 5315 -912 1791 176 0 21 chr6 145377471 145377761 -43901793 + AluJb SINE Alu 1 284 -28 3123 210 65 60 chr6 145377761 145377931 -43901623 + L1ME1 LINE L1 5315 5483 -744 507 126 63 63 chr6 145377932 145378043 -43901511 + MER74A LTR ERVL 1 111 -447 338 136 34 0 chr6 145378074 145378133 -43901421 - MER74A LTR ERVL -380 178 118 2325 103 0 0 chr6 145378145 145378447 -43901107 - AluSx SINE Alu -10 302 1 395 157 24 12 chr6 145378447 145378530 -43901024 + MER74A LTR ERVL 475 558 0 2682 194 67 37 chr6 145378533 145379277 -43900277 + L1ME1 LINE L1 5481 6403 0 534 200 35 41 chr6 145380807 145380977 -43898577 - MER69 DNA AcHobo 0 2526 2358 3424 247 71 30 chr6 145380984 145381929 -43897625 - MER69 DNA AcHobo -1314 1212 209 2315 97 0 3 chr6 145381929 145382228 -43897326 - AluSq SINE Alu -15 298 1 3424 247 71 30 chr6 145382228 145382446 -43897108 - MER69 DNA AcHobo -2317 209 1 2505 72 0 0 chr6 145382925 145383231 -43896323 + AluY SINE Alu 1 306 -5 399 200 48 9 chr6 145383394 145383499 -43896055 - MER103 DNA DNA -12 154 46 799 294 34 53 chr6 145383652 145383867 -43895687 + L2 LINE L2 2840 3049 -264 1744 182 56 16 chr6 145383867 145384240 -43895314 + MLT1B LTR MaLR 1 388 -2 799 294 34 53 chr6 145384240 145384347 -43895207 + L2 LINE L2 3049 3156 -157 592 281 50 20 chr6 145384412 145384611 -43894943 + MIR SINE MIR 48 252 -10 466 241 38 38 chr6 145384620 145384753 -43894801 + L2 LINE L2 3169 3301 -12 22 0 0 0 chr6 145385785 145385807 -43893747 + AT_rich Low_complexity Low_complexity 1 22 0 1560 212 21 9 chr6 145385860 145386284 -43893270 + L1ME1 LINE L1 4336 4764 -1382 253 203 14 14 chr6 145386287 145386356 -43893198 + L1PB1 LINE L1 129 197 -6666 * 9453 156 26 15 chr6 145386353 145390904 -43888650 + L1PB1 LINE L1 1392 5891 -976 1771 127 0 40 chr6 145390904 145391179 -43888375 + AluSq SINE Alu 37 300 -13 9453 156 26 15 chr6 145391179 145391688 -43887866 + L1PB1 LINE L1 5891 6510 -357 225 0 0 0 chr6 145391688 145391713 -43887841 + (CA)n Simple_repeat Simple_repeat 2 26 0 9453 156 26 15 chr6 145391713 145392075 -43887479 + L1PB1 LINE L1 6510 6867 0 3324 209 34 27 chr6 145392095 145393501 -43886053 + L1ME1 LINE L1 4745 6156 -10 258 333 105 26 chr6 145393608 145394026 -43885528 + L2 LINE L2 1985 2435 -879 639 260 154 5 chr6 145394030 145394238 -43885316 + MIR SINE MIR 6 244 -18 1947 138 7 10 chr6 145394719 145395015 -43884539 - AluJb SINE Alu -17 295 1 302 294 242 0 chr6 145396082 145396235 -43883319 + L2 LINE L2 3083 3272 0 211 286 0 0 chr6 145397329 145397385 -43882169 + (TG)n Simple_repeat Simple_repeat 1 56 0 279 270 48 0 chr6 145399286 145399349 -43880205 - L2 LINE L2 0 3313 3248 3951 75 20 11 chr6 145399867 145400414 -43879140 + MER41A LTR ERV1 1 552 -2 22 0 0 0 chr6 145401577 145401599 -43877955 + AT_rich Low_complexity Low_complexity 1 22 0 482 281 110 0 chr6 145401768 145401914 -43877640 + MIR SINE MIR 101 262 0 309 219 55 0 chr6 145402000 145402073 -43877481 - MIR SINE MIR -155 107 31 517 305 64 24 chr6 145402831 145403080 -43876474 + MIR SINE MIR 2 260 -2 214 280 115 45 chr6 145403542 145403699 -43875855 - L2 LINE L2 -1282 2032 1865 188 280 0 0 chr6 145404612 145404662 -43874892 - MIR SINE MIR -101 161 112 26 62 0 15 chr6 145406466 145406519 -43873035 + AT_rich Low_complexity Low_complexity 1 54 -10 1212 194 35 45 chr6 145406519 145406808 -43872746 - AluJo SINE Alu -15 287 2 26 62 0 15 chr6 145406808 145406819 -43872735 + AT_rich Low_complexity Low_complexity 54 64 0 460 308 101 22 chr6 145410600 145410876 -43868678 - L2 LINE L2 -428 2886 2589 1717 114 17 45 chr6 145413595 145413884 -43865670 + AluSc SINE Alu 1 281 -28 1767 114 12 0 chr6 145414075 145414321 -43865233 + AluSx SINE Alu 1 249 -63 1863 143 0 11 chr6 145414432 145414711 -43864843 - AluJo SINE Alu -36 276 1 2123 200 33 6 chr6 145414719 145415210 -43864344 + Charlie1 DNA MER1_type 1528 2031 -730 476 155 10 21 chr6 145415217 145415314 -43864240 - L1MC2 LINE L1 -374 5970 5875 677 168 65 0 chr6 145415319 145415474 -43864080 + Charlie1 DNA MER1_type 2596 2760 -1 204 304 38 38 chr6 145417070 145417149 -43862405 + MIR SINE MIR 34 112 -96 231 61 0 0 chr6 145417197 145417230 -43862324 + (TC)n Simple_repeat Simple_repeat 2 34 0 396 0 0 0 chr6 145417230 145417274 -43862280 + (CA)n Simple_repeat Simple_repeat 1 44 0 1275 139 91 42 chr6 145417346 145417655 -43861899 - MER33 DNA MER1_type 0 324 1 299 274 35 0 chr6 145418169 145418282 -43861272 - Charlie8 DNA MER1_type -2159 258 142 398 315 35 41 chr6 145418862 145418990 -43860564 + L1ME LINE L1 5483 5610 -511 2214 104 0 13 chr6 145418990 145419289 -43860265 + AluSq SINE Alu 9 303 -10 398 315 35 41 chr6 145419289 145419474 -43860080 + L1ME LINE L1 5610 5794 -327 285 287 110 35 chr6 145420673 145420927 -43858627 + L2 LINE L2 1831 2103 -1211 291 254 156 16 chr6 145421213 145421335 -43858219 - MIR SINE MIR -107 155 17 216 189 0 0 chr6 145422177 145422214 -43857340 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 398 300 18 9 chr6 145423267 145423377 -43856177 + L2 LINE L2 3162 3272 0 181 264 28 56 chr6 145423808 145423880 -43855674 - MIR SINE MIR -105 103 34 1054 156 0 0 chr6 145423921 145424088 -43855466 + AluSg/x SINE Alu 136 302 -10 2262 101 0 7 chr6 145424097 145424404 -43855150 + AluSx SINE Alu 1 305 -7 252 241 0 0 chr6 145424572 145424630 -43854924 + L1ME LINE L1 4289 4346 -1800 553 272 169 26 chr6 145424666 145425446 -43854108 + L1ME LINE L1 4457 5348 -798 317 263 184 0 chr6 145425476 145425590 -43853964 + L1ME LINE L1 5347 5481 -683 233 215 31 0 chr6 145425860 145425925 -43853629 - L1ME LINE L1 -331 5790 5724 280 146 0 0 chr6 145425949 145425997 -43853557 + U5 snRNA snRNA 1 48 -68 279 245 176 57 chr6 145426023 145426439 -43853115 - L1ME LINE L1 -403 5718 5255 1332 131 10 5 chr6 145426580 145426779 -43852775 - AluSg/x SINE Alu -4 306 107 313 309 77 35 chr6 145427505 145427686 -43851868 + MIR SINE MIR 42 225 -37 324 246 45 68 chr6 145427921 145428070 -43851484 - MIR SINE MIR -43 165 20 1983 104 42 3 chr6 145428270 145428557 -43850997 + AluSx SINE Alu 1 298 -14 2569 48 0 6 chr6 145429551 145429864 -43849690 - AluY SINE Alu 0 311 1 2352 81 0 13 chr6 145430094 145430402 -43849152 - AluY SINE Alu -7 304 1 2219 100 0 10 chr6 145430620 145430920 -43848634 + AluSx SINE Alu 1 297 -15 495 215 185 0 chr6 145433947 145434082 -43845472 - MER5A DNA MER1_type -13 176 17 35 0 0 0 chr6 145434277 145434312 -43845242 + AT_rich Low_complexity Low_complexity 1 35 0 324 83 0 0 chr6 145435984 145436032 -43843522 + (TG)n Simple_repeat Simple_repeat 2 49 0 307 252 99 0 chr6 145436789 145436900 -43842654 - L1MC4 LINE L1 -1337 6705 6584 324 0 0 0 chr6 145436968 145437004 -43842550 + (CA)n Simple_repeat Simple_repeat 2 37 0 240 111 0 0 chr6 145437004 145437040 -43842514 + (TC)n Simple_repeat Simple_repeat 1 36 0 2288 94 0 7 chr6 145442498 145442795 -43836759 - AluSx SINE Alu -15 297 3 429 358 44 18 chr6 145444310 145444584 -43834970 + L2 LINE L2 2623 2903 -411 1763 154 47 7 chr6 145444796 145445094 -43834460 + AluSg SINE Alu 1 310 0 22 35 0 0 chr6 145446799 145446828 -43832726 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 145448171 145448196 -43831358 + AT_rich Low_complexity Low_complexity 1 25 0 2286 97 6 6 chr6 145453132 145453443 -43826111 + AluSq SINE Alu 1 311 -2 26 30 0 0 chr6 145454885 145454918 -43824636 + AT_rich Low_complexity Low_complexity 1 33 0 210 37 0 0 chr6 145455697 145455724 -43823830 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2216 98 0 3 chr6 145455726 145456012 -43823542 - AluSg SINE Alu -25 285 1 405 315 120 51 chr6 145456404 145456862 -43822692 + L2 LINE L2 2590 3067 -246 26 64 0 0 chr6 145458219 145458266 -43821288 + AT_rich Low_complexity Low_complexity 1 47 0 1158 160 43 22 chr6 145458908 145459139 -43820415 - MER46A DNA MER2_type 0 236 1 318 106 0 0 chr6 145460492 145460539 -43819015 + (CTTA)n Simple_repeat Simple_repeat 1 47 0 2105 94 14 17 chr6 145460540 145460827 -43818727 - AluSg SINE Alu -24 286 1 186 315 19 0 chr6 145461401 145461455 -43818099 + MIR SINE MIR 200 254 -8 21 0 0 0 chr6 145461483 145461504 -43818050 + AT_rich Low_complexity Low_complexity 1 21 0 615 244 61 6 chr6 145461850 145462014 -43817540 - MIR SINE MIR -26 236 64 593 209 9 0 chr6 145463282 145463397 -43816157 - FLAM_A SINE Alu -17 116 1 21 89 0 0 chr6 145463935 145463991 -43815563 + AT_rich Low_complexity Low_complexity 1 56 0 424 321 98 45 chr6 145465928 145466286 -43813268 + LTR33 LTR ERVL 115 491 -30 183 80 0 0 chr6 145467180 145467205 -43812349 + (A)n Simple_repeat Simple_repeat 1 25 0 1751 139 41 9 chr6 145467661 145467978 -43811576 + Ricksha DNA DNA 2490 2816 -38 257 328 132 6 chr6 145470768 145470988 -43808566 + MIR SINE MIR 16 261 -1 243 304 89 0 chr6 145471472 145471551 -43808003 + L2 LINE L2 3169 3254 -18 205 335 98 43 chr6 145472917 145473081 -43806473 - L3b LINE CR1 -148 1435 1263 213 186 34 0 chr6 145473751 145473810 -43805744 + A-rich Low_complexity Low_complexity 4 64 0 24 0 0 0 chr6 145474453 145474477 -43805077 + AT_rich Low_complexity Low_complexity 1 24 0 1708 175 7 10 chr6 145474501 145474798 -43804756 - AluJo SINE Alu -16 296 1 928 132 40 11 chr6 145475396 145475570 -43803984 - L1MA8 LINE L1 -2 6289 6111 21 0 0 0 chr6 145475812 145475833 -43803721 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 145476157 145476180 -43803374 + AT_rich Low_complexity Low_complexity 1 23 0 572 193 18 9 chr6 145476552 145476661 -43802893 - MER81 DNA DNA -4 110 1 208 233 0 47 chr6 145476739 145476825 -43802729 + GA-rich Low_complexity Low_complexity 3 84 0 186 246 29 58 chr6 145477024 145477093 -43802461 - L3b LINE CR1 -330 1253 1187 9162 80 11 3 chr6 145478594 145480612 -43798942 + L1PA7 LINE L1 4120 6154 0 27 49 0 0 chr6 145480804 145480845 -43798709 + AT_rich Low_complexity Low_complexity 1 41 0 2097 127 3 29 chr6 145480971 145481317 -43798237 + MER1B DNA MER1_type 1 337 0 22 56 0 0 chr6 145482874 145482910 -43796644 + AT_rich Low_complexity Low_complexity 1 36 0 375 326 78 7 chr6 145483107 145483248 -43796306 + MIR SINE MIR 26 176 -86 22 56 0 0 chr6 145483814 145483850 -43795704 + AT_rich Low_complexity Low_complexity 1 36 0 2724 3 0 0 chr6 145484100 145484393 -43795161 + AluYa5 SINE Alu 1 293 -18 1422 232 48 39 chr6 145484424 145484708 -43794846 + Charlie4a DNA MER1_type 31 322 -1639 2127 113 56 31 chr6 145484708 145485063 -43794491 + THE1B LTR MaLR 1 364 0 1422 232 48 39 chr6 145485063 145485240 -43794314 + Charlie4a DNA MER1_type 322 496 -12 194 284 119 0 chr6 145485544 145485611 -43793943 - L3b LINE CR1 0 1583 1509 473 228 141 11 chr6 145485772 145485932 -43793622 - MER5A DNA MER1_type 0 189 6 2476 152 12 55 chr6 145486332 145486838 -43792716 + MER31A LTR ERV1 2 485 0 843 239 15 0 chr6 145489276 145489477 -43790077 - MER3 DNA MER1_type -3 206 3 1738 168 3 47 chr6 145489567 145489888 -43789666 - AluJb SINE Alu -5 307 1 327 331 134 26 chr6 145489901 145490363 -43789191 + L2 LINE L2 2230 2741 -573 616 271 24 12 chr6 145491595 145491761 -43787793 + MIR SINE MIR 45 212 -50 458 299 153 39 chr6 145492068 145492630 -43786924 + L2 LINE L2 2329 2954 -360 3800 161 18 30 chr6 145492898 145493460 -43786094 - L1MB2 LINE L1 -2 6169 5617 2307 81 7 10 chr6 145493460 145493758 -43785796 - AluSq SINE Alu -16 297 1 3800 161 18 30 chr6 145493758 145493924 -43785630 - L1MB2 LINE L1 -554 5617 5450 234 276 92 0 chr6 145494099 145494175 -43785379 - L2 LINE L2 -1012 2302 2220 2510 85 0 0 chr6 145494260 145494567 -43784987 - AluSx SINE Alu -5 307 1 21 36 0 0 chr6 145495872 145495900 -43783654 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 145496412 145496433 -43783121 + AT_rich Low_complexity Low_complexity 1 21 0 1987 153 7 0 chr6 145496889 145497197 -43782357 + AluJb SINE Alu 1 310 -2 643 272 10 25 chr6 145497325 145497527 -43782027 + MIR SINE MIR 3 201 -61 227 250 125 0 chr6 145497904 145497968 -43781586 + MIR SINE MIR 118 189 -73 233 355 100 9 chr6 145498612 145498722 -43780832 - L2 LINE L2 -16 3256 3137 408 40 0 0 chr6 145498936 145498986 -43780568 + (CA)n Simple_repeat Simple_repeat 1 50 0 1227 161 83 0 chr6 145499403 145499621 -43779933 + MER46A DNA MER2_type 1 236 0 1033 218 141 42 chr6 145499752 145500297 -43779257 + L1ME LINE L1 1069 1667 -4863 501 293 116 0 chr6 145500956 145501137 -43778417 + MIR SINE MIR 47 248 -14 23 0 0 0 chr6 145501302 145501325 -43778229 + AT_rich Low_complexity Low_complexity 1 23 0 214 284 0 75 chr6 145501893 145501960 -43777594 - MIR SINE MIR -111 97 36 251 216 40 0 chr6 145503481 145503555 -43775999 + (TA)n Simple_repeat Simple_repeat 2 78 0 1685 166 0 33 chr6 145503555 145503856 -43775698 - AluJo SINE Alu -18 294 4 204 97 0 0 chr6 145503860 145503891 -43775663 + (T)n Simple_repeat Simple_repeat 1 31 0 232 278 0 0 chr6 145505791 145505845 -43773709 - MIR SINE MIR 0 262 209 206 289 12 84 chr6 145505981 145506045 -43773509 + MER5B DNA MER1_type 60 118 -60 1720 138 13 45 chr6 145506045 145506357 -43773197 - L1MC1 LINE L1 -11 6322 6021 206 289 12 84 chr6 145506357 145506375 -43773179 + MER5B DNA MER1_type 118 136 -42 1982 138 7 0 chr6 145506617 145506914 -43772640 + AluSg1 SINE Alu 1 299 -10 2252 95 0 3 chr6 145508336 145508631 -43770923 - AluSg SINE Alu -16 294 1 271 269 0 0 chr6 145508971 145509023 -43770531 + HAL1 LINE L1 1 52 -2455 1907 161 0 10 chr6 145509543 145509847 -43769707 - AluSx SINE Alu -11 301 1 23 0 0 0 chr6 145511023 145511046 -43768508 + AT_rich Low_complexity Low_complexity 1 23 0 5603 46 10 1 chr6 145511684 145512381 -43767173 - L1PA7 LINE L1 -3 6151 5449 399 41 0 0 chr6 145513237 145513286 -43766268 + (CA)n Simple_repeat Simple_repeat 2 50 0 226 201 65 45 chr6 145517576 145517730 -43761824 + L1ME LINE L1 2447 2603 -3937 301 337 123 2 chr6 145517815 145518222 -43761332 + L1ME LINE L1 2704 3159 -3381 1182 190 155 8 chr6 145518398 145518656 -43760898 + AluJo SINE Alu 1 296 -6 333 140 0 0 chr6 145518661 145518718 -43760836 + (GGGGA)n Simple_repeat Simple_repeat 5 61 0 1971 159 60 29 chr6 145518774 145519194 -43760360 + Tigger2a DNA MER2_type 2 434 0 454 280 202 28 chr6 145519247 145520044 -43759510 + L1ME LINE L1 3439 4374 -2166 25 0 0 0 chr6 145520057 145520082 -43759472 + AT_rich Low_complexity Low_complexity 1 25 0 1629 118 18 0 chr6 145520121 145520341 -43759213 + AluSg/x SINE Alu 67 290 -20 1763 141 30 30 chr6 145520522 145520827 -43758727 - AluSx SINE Alu -7 305 1 353 64 0 0 chr6 145520832 145520879 -43758675 + MADE1 DNA Mariner 34 80 0 1117 270 41 26 chr6 145520915 145521256 -43758298 + MLT1I LTR MaLR 46 391 -18 447 301 55 39 chr6 145521267 145521579 -43757975 + L1ME LINE L1 5800 6116 -448 1963 94 15 0 chr6 145521760 145522026 -43757528 + AluSg SINE Alu 23 292 -18 40 37 0 0 chr6 145522094 145522148 -43757406 + AT_rich Low_complexity Low_complexity 1 54 0 400 316 72 13 chr6 145522210 145522362 -43757192 - MIR3 SINE MIR -15 193 33 1224 206 25 117 chr6 145522558 145522639 -43756915 + MLT1A1 LTR MaLR 1 88 -277 1847 71 8 0 chr6 145522639 145522879 -43756675 + L1PA5 LINE L1 5910 6151 -3 1224 206 25 117 chr6 145522879 145523199 -43756355 + MLT1A1 LTR MaLR 88 365 0 2596 51 0 3 chr6 145523245 145523557 -43755997 - AluY SINE Alu 0 311 1 244 241 0 115 chr6 145523562 145523649 -43755905 + MIR SINE MIR 88 164 -98 639 180 0 0 chr6 145526738 145526849 -43752705 + FLAM_A SINE Alu 21 131 -11 1062 139 59 0 chr6 145526913 145527100 -43752454 - L1MB7 LINE L1 -13 6171 5974 453 146 24 0 chr6 145527100 145527177 -43752377 + L1MB7 LINE L1 6085 6168 -16 2237 116 0 22 chr6 145527374 145527693 -43751861 + AluSx SINE Alu 1 312 0 265 391 124 31 chr6 145527919 145528760 -43750794 - L2 LINE L2 -422 2892 1974 493 250 89 0 chr6 145530072 145530184 -43749370 + L2 LINE L2 3188 3309 -4 345 340 28 35 chr6 145530192 145530333 -43749221 - MIR3 SINE MIR -45 163 24 270 262 19 19 chr6 145531447 145531550 -43748004 + GA-rich Low_complexity Low_complexity 3 105 0 296 285 42 42 chr6 145531948 145532092 -43747462 + MLT1L LTR MaLR 41 184 -431 2261 115 0 3 chr6 145533213 145533526 -43746028 - AluSx SINE Alu 0 312 1 533 268 104 43 chr6 145533571 145533802 -43745752 + MIR SINE MIR 6 250 -12 288 188 0 0 chr6 145533861 145533925 -43745629 + (TAA)n Simple_repeat Simple_repeat 2 65 0 573 328 56 0 chr6 145533929 145534127 -43745427 - MIR SINE MIR -29 233 25 29 28 0 0 chr6 145534749 145534785 -43744769 + AT_rich Low_complexity Low_complexity 1 36 0 990 284 117 43 chr6 145534871 145535135 -43744419 + L1MD3 LINE L1 5353 5596 -2212 1464 86 50 14 chr6 145535135 145535357 -43744197 + MER30 DNA MER1_type 1 230 0 990 284 117 43 chr6 145535357 145535624 -43743930 + L1MD3 LINE L1 5596 5923 -1885 232 281 0 16 chr6 145535681 145535745 -43743809 + L1MD3 LINE L1 6610 6672 -1323 720 241 72 6 chr6 145536295 145536461 -43743093 + MER8 DNA MER2_type 1 177 -62 340 243 0 27 chr6 145536494 145536568 -43742986 - Tigger2a DNA MER2_type -361 73 2 3738 156 47 37 chr6 145539950 145540091 -43739463 - MER44D DNA MER2_type -1883 604 466 1813 158 0 32 chr6 145540091 145540401 -43739153 - AluJb SINE Alu -12 300 1 3738 156 47 37 chr6 145540401 145540984 -43738570 - MER44D DNA MER2_type -2021 466 1 2090 157 0 0 chr6 145541246 145541558 -43737996 + AluSx SINE Alu 1 312 0 1977 81 32 81 chr6 145542011 145542321 -43737233 + AluSg SINE Alu 1 295 -15 574 118 0 39 chr6 145542726 145542828 -43736726 + MER4A LTR ERV1 1 98 -566 1100 156 33 2 chr6 145542828 145543072 -43736482 + MER4A LTR ERV1 261 570 -94 1098 186 143 37 chr6 145543265 145543593 -43735961 + MLT1A2 LTR MaLR 1 363 -11 207 401 42 21 chr6 145543753 145543895 -43735659 - MIR SINE MIR -106 156 12 1248 115 27 123 chr6 145543918 145544179 -43735375 - AluYb8 SINE Alu 0 318 83 296 314 35 0 chr6 145544191 145544277 -43735277 - MIR3 SINE MIR -54 154 66 2229 94 0 14 chr6 145544946 145545258 -43734296 + AluSx SINE Alu 1 308 0 280 304 196 23 chr6 145546025 145546245 -43733309 - L2 LINE L2 -12 3301 3044 277 311 107 16 chr6 145546460 145546582 -43732972 - MIR3 SINE MIR -7 201 69 406 325 86 24 chr6 145548020 145548275 -43731279 - L2 LINE L2 -197 3075 2805 1961 152 6 29 chr6 145548408 145548723 -43730831 + AluSx SINE Alu 1 308 -4 1324 176 208 7 chr6 145549811 145550214 -43729340 + LTR54B LTR ERV1 1 484 -14 29 28 0 0 chr6 145550997 145551033 -43728521 + AT_rich Low_complexity Low_complexity 1 36 0 324 313 80 0 chr6 145551957 145552069 -43727485 - MIR SINE MIR -48 214 94 223 329 26 13 chr6 145552096 145552172 -43727382 + MIR SINE MIR 11 87 -175 811 162 54 54 chr6 145552519 145552704 -43726850 - Tigger3b DNA MER2_type 0 1231 1047 4174 136 78 4 chr6 145552710 145552724 -43726830 - Tigger3b DNA MER2_type -2188 840 828 1841 146 3 36 chr6 145552724 145553033 -43726521 - AluJb SINE Alu -13 299 1 4174 136 78 4 chr6 145553033 145553800 -43725754 - Tigger3b DNA MER2_type -2200 828 1 1254 207 135 94 chr6 145554217 145554825 -43724729 + LTR27 LTR ERV1 2 634 -2 593 139 0 9 chr6 145555051 145555166 -43724388 - L1MB8 LINE L1 -37 6141 6028 * 1165 218 49 9 chr6 145555157 145555505 -43724049 + L1MB7 LINE L1 3614 3975 -2171 1111 169 9 0 chr6 145555505 145555724 -43723830 + L1MB7 LINE L1 5343 5563 -617 1349 76 0 18 chr6 145555784 145555955 -43723599 - AluSg/x SINE Alu -9 303 136 369 151 67 76 chr6 145555956 145556075 -43723479 + L1MB7 LINE L1 6052 6169 -15 2233 183 69 0 chr6 145556076 145556567 -43722987 - L1MB7 LINE L1 -145 6039 5515 2052 128 0 0 chr6 145556615 145556897 -43722657 + AluSx SINE Alu 1 282 -30 366 23 0 0 chr6 145556897 145556940 -43722614 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 1775 184 0 10 chr6 145557035 145557339 -43722215 + AluJb SINE Alu 1 301 -11 2261 121 0 0 chr6 145558011 145558317 -43721237 + AluSx SINE Alu 1 306 -6 246 204 0 0 chr6 145558356 145558405 -43721149 - L2 LINE L2 0 3313 3265 526 222 65 68 chr6 145559200 145559243 -43720311 + L1MEc LINE L1 2078 2120 -4276 2012 150 0 0 chr6 145559243 145559536 -43720018 + AluSx SINE Alu 1 293 -19 526 222 65 68 chr6 145559536 145559785 -43719769 + L1MEc LINE L1 2120 2369 -4027 2219 90 0 17 chr6 145560032 145560322 -43719232 - AluSc SINE Alu -13 296 12 23 0 0 0 chr6 145561034 145561057 -43718497 + AT_rich Low_complexity Low_complexity 1 23 0 2007 86 45 28 chr6 145561838 145562128 -43717426 - AluSc SINE Alu -14 295 1 2617 98 34 5 chr6 145562594 145562981 -43716573 - MER48 LTR ERV1 0 398 1 703 45 11 0 chr6 145563005 145563094 -43716460 - HERVH48 LTR ERV1 -4267 2387 2298 488 132 22 11 chr6 145563916 145564007 -43715547 + MER4A LTR ERV1 1 92 -572 761 133 4 123 chr6 145564013 145564253 -43715301 + MER4A LTR ERV1 261 530 -134 2422 70 3 0 chr6 145564259 145564559 -43714995 + AluY SINE Alu 1 301 -10 838 101 0 0 chr6 145564561 145564670 -43714884 + AluSq/x SINE Alu 1 109 -203 342 109 0 0 chr6 145564670 145564725 -43714829 + Alu SINE Alu 248 302 0 * 930 133 0 13 chr6 145564721 145564871 -43714683 + MER4A LTR ERV1 517 664 0 180 0 0 0 chr6 145565797 145565817 -43713737 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 272 221 123 30 chr6 145565936 145566093 -43713461 + L1ME4a LINE L1 1185 6100 -1 431 288 36 14 chr6 145567245 145567384 -43712170 - MIR SINE MIR -40 222 81 246 254 0 18 chr6 145567377 145567432 -43712122 + MIR SINE MIR 40 93 -169 * 244 203 29 29 chr6 145568944 145569013 -43710541 - MIR3 SINE MIR -8 200 132 231 195 0 0 chr6 145570501 145570542 -43709012 + GA-rich Low_complexity Low_complexity 1 41 0 254 284 98 49 chr6 145572154 145572337 -43707217 + MIR3 SINE MIR 3 194 -14 197 271 0 34 chr6 145574882 145574941 -43704613 + L2 LINE L2 752 808 -2506 237 239 70 0 chr6 145574943 145575014 -43704540 + MER112 DNA MER1_type 4 79 -181 1725 123 4 4 chr6 145575254 145575507 -43704047 - AluSx SINE Alu -5 307 55 294 169 34 0 chr6 145575607 145575666 -43703888 + Alu SINE Alu 236 296 -6 577 264 278 3 chr6 145575751 145576104 -43703450 + L2 LINE L2 797 1246 -2068 1572 148 145 15 chr6 145576105 145576436 -43703118 + THE1C LTR MaLR 2 375 0 10013 105 10 35 chr6 145576436 145578050 -43701504 + THE1C-int LTR MaLR 1 1573 -7 1978 117 80 14 chr6 145578058 145578408 -43701146 + THE1C LTR MaLR 3 375 0 238 325 0 0 chr6 145578410 145578493 -43701061 + L2 LINE L2 1244 1326 -1988 2292 114 0 0 chr6 145579399 145579697 -43699857 - AluSx SINE Alu -14 298 1 215 304 0 0 chr6 145580058 145580114 -43699440 - L2 LINE L2 -3 3269 3214 1915 131 4 0 chr6 145580908 145581183 -43698371 + AluSx SINE Alu 1 276 -36 569 210 167 6 chr6 145581303 145581465 -43698089 - MER20 DNA MER1_type 0 219 32 209 269 26 13 chr6 145582040 145582118 -43697436 + MIR SINE MIR 179 257 -5 24 0 0 0 chr6 145582224 145582248 -43697306 + AT_rich Low_complexity Low_complexity 1 24 0 190 300 20 70 chr6 145584706 145584806 -43694748 - L2 LINE L2 -7 3265 3171 396 0 0 0 chr6 145585461 145585505 -43694049 + (CA)n Simple_repeat Simple_repeat 2 45 0 209 214 0 24 chr6 145585596 145585638 -43693916 - MER5A DNA MER1_type -106 83 43 1078 120 0 13 chr6 145585654 145585812 -43693742 + AluSg/x SINE Alu 144 299 -13 368 266 197 20 chr6 145586420 145586994 -43692560 - L1ME3A LINE L1 -230 5940 5259 332 313 39 34 chr6 145587092 145587271 -43692283 - MLT1J LTR MaLR -91 420 241 445 276 129 58 chr6 145587445 145587793 -43691761 - L1ME3A LINE L1 -896 5250 4878 427 301 69 10 chr6 145587940 145588229 -43691325 - L1ME3A LINE L1 -1428 4718 4413 492 310 128 28 chr6 145588289 145588647 -43690907 - L1ME3A LINE L1 -1877 4269 3876 319 329 79 7 chr6 145588749 145588901 -43690653 - L1ME3A LINE L1 -2399 3747 3585 1810 161 0 33 chr6 145589777 145590081 -43689473 - AluJo SINE Alu -18 294 1 1246 107 0 0 chr6 145590490 145590658 -43688896 + AluSq SINE Alu 129 296 -17 472 191 370 0 chr6 145590699 145590861 -43688693 - MIR SINE MIR -36 226 5 2633 99 32 2 chr6 145590864 145591281 -43688273 - MER1A DNA MER1_type 0 529 59 453 268 101 7 chr6 145591501 145591639 -43687915 + MIR SINE MIR 46 196 -66 21 0 0 0 chr6 145591786 145591807 -43687747 + AT_rich Low_complexity Low_complexity 1 21 0 372 278 111 9 chr6 145591908 145592016 -43687538 + L2 LINE L2 3191 3309 -4 2420 85 0 7 chr6 145592386 145592691 -43686863 + AluSg SINE Alu 1 303 -7 186 43 0 0 chr6 145592691 145592714 -43686840 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 354 108 0 0 chr6 145592713 145592778 -43686776 + (TA)n Simple_repeat Simple_repeat 1 65 0 262 323 99 63 chr6 145592910 145593272 -43686282 - L2 LINE L2 -1 3271 2897 236 335 168 11 chr6 145594090 145594281 -43685273 + MIR SINE MIR 3 223 -39 937 93 14 0 chr6 145596646 145596786 -43682768 + L1MA2 LINE L1 6163 6304 0 25 0 0 0 chr6 145596787 145596812 -43682742 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr6 145598375 145598398 -43681156 + (A)n Simple_repeat Simple_repeat 1 23 0 207 100 0 0 chr6 145598871 145598901 -43680653 + (T)n Simple_repeat Simple_repeat 1 30 0 1655 152 0 58 chr6 145599776 145600086 -43679468 + AluJb SINE Alu 1 292 -20 288 114 0 0 chr6 145601849 145601893 -43677661 + Alu SINE Alu 1 44 -259 1935 108 0 0 chr6 145601908 145602158 -43677396 - AluSg SINE Alu -60 250 1 309 194 10 31 chr6 145602174 145602272 -43677282 + GA-rich Low_complexity Low_complexity 3 98 0 3430 162 32 11 chr6 145602276 145602937 -43676617 + L1MB4 LINE L1 5491 6165 -15 468 190 0 3 chr6 145603310 145603536 -43676018 + AluJb SINE Alu 1 302 -10 294 294 22 43 chr6 145603545 145603637 -43675917 - MIR SINE MIR -102 106 17 306 269 250 6 chr6 145604635 145604795 -43674759 + MIR SINE MIR 22 220 -42 296 262 48 101 chr6 145604982 145605150 -43674404 + MIR3 SINE MIR 41 199 -9 188 339 31 0 chr6 145605321 145605386 -43674168 - L2 LINE L2 -532 2782 2716 251 308 199 7 chr6 145605529 145605675 -43673879 + MIR3 SINE MIR 28 201 -7 * 366 228 76 11 chr6 145605668 145605760 -43673794 - MER5B DNA MER1_type -80 98 1 227 395 128 5 chr6 145606205 145606400 -43673154 - L2 LINE L2 -50 3222 3004 1963 155 3 3 chr6 145606569 145606872 -43672682 - AluSx SINE Alu -9 303 1 434 225 50 67 chr6 145608667 145609034 -43670520 + L1MC4 LINE L1 6843 7176 -785 582 149 54 88 chr6 145609035 145609139 -43670415 + L1MB2 LINE L1 6022 6121 -50 2101 119 0 3 chr6 145609139 145609433 -43670121 + AluSx SINE Alu 1 293 -19 582 149 54 88 chr6 145609433 145609476 -43670078 + L1MB2 LINE L1 6121 6164 -7 566 303 59 16 chr6 145609494 145609814 -43669740 + L1MC4 LINE L1 7165 7498 -544 293 294 56 55 chr6 145609798 145610275 -43669279 + L1MC4 LINE L1 7314 7906 -136 * 243 159 0 0 chr6 145610289 145610333 -43669221 + L1MC5 LINE L1 7185 7228 -733 889 212 95 103 chr6 145610534 145611134 -43668420 + L1MC5 LINE L1 7306 7900 -61 2069 136 0 7 chr6 145612000 145612317 -43667237 + AluSx SINE Alu 1 315 0 1283 219 81 38 chr6 145612367 145612996 -43666558 + L1MC5 LINE L1 7261 7916 -45 1995 154 0 13 chr6 145613003 145613309 -43666245 - AluJb SINE Alu -10 302 1 22 0 0 0 chr6 145613402 145613424 -43666130 + AT_rich Low_complexity Low_complexity 1 22 0 352 332 91 9 chr6 145613541 145613761 -43665793 - L3 LINE CR1 -4 1573 1336 380 236 62 99 chr6 145613785 145614027 -43665527 - MER112 DNA MER1_type -11 249 17 196 158 26 0 chr6 145614187 145614225 -43665329 - L2 LINE L2 -5 3308 3270 38 61 0 0 chr6 145614293 145614359 -43665195 + AT_rich Low_complexity Low_complexity 1 66 0 28 71 0 0 chr6 145614680 145614736 -43664818 + AT_rich Low_complexity Low_complexity 1 56 0 364 327 78 32 chr6 145615015 145615232 -43664322 - L3 LINE CR1 -771 806 580 202 267 22 0 chr6 145615243 145615288 -43664266 - L3 LINE CR1 -1099 478 433 1308 162 134 35 chr6 145615296 145615580 -43663974 - AluJo SINE Alu 0 312 1 830 257 24 9 chr6 145616334 145616544 -43663010 + MIR SINE MIR 1 213 -49 924 199 0 28 chr6 145616554 145616730 -43662824 + FAM SINE Alu 1 40 -9 200 225 0 50 chr6 145616730 145616770 -43662784 + L2 LINE L2 3252 3289 -24 * 257 216 0 0 chr6 145616737 145616788 -43662766 + MIR SINE MIR 212 262 0 22 88 0 0 chr6 145616821 145616878 -43662676 + AT_rich Low_complexity Low_complexity 1 57 0 240 260 0 0 chr6 145617165 145617215 -43662339 + GA-rich Low_complexity Low_complexity 3 52 0 2301 104 3 3 chr6 145617219 145617528 -43662026 + AluSg1 SINE Alu 1 309 0 657 180 30 60 chr6 145617930 145618130 -43661424 + L1MC5 LINE L1 7732 7925 -36 203 348 59 25 chr6 145619251 145619369 -43660185 + MIR3 SINE MIR 1 122 -86 2329 92 0 0 chr6 145619416 145619708 -43659846 + AluSx SINE Alu 1 292 -20 897 147 0 15 chr6 145620117 145620253 -43659301 - AluSq/x SINE Alu -178 134 1 450 238 29 122 chr6 145620729 145620825 -43658729 + HAL1 LINE L1 38 141 -2366 189 0 0 0 chr6 145620825 145620846 -43658708 + (CA)n Simple_repeat Simple_repeat 2 22 0 450 238 29 122 chr6 145620846 145621060 -43658494 + HAL1 LINE L1 141 319 -2188 535 244 55 133 chr6 145621091 145621291 -43658263 + HAL1 LINE L1 1545 1759 -748 2307 118 0 0 chr6 145621291 145621595 -43657959 - AluSx SINE Alu -8 304 1 535 244 55 133 chr6 145621595 145622012 -43657542 + HAL1 LINE L1 1759 2114 -393 346 105 0 246 chr6 145622145 145622259 -43657295 + L1M3e LINE L1 1 86 -6944 2210 90 14 3 chr6 145622263 145622553 -43657001 - AluSq SINE Alu -19 294 2 3140 110 18 24 chr6 145622682 145623184 -43656370 - LTR3b LTR ERVK 0 500 2 490 88 0 0 chr6 145623199 145623267 -43656287 - HERVK14 LTR ERVK -61 5884 5817 1255 240 10 3 chr6 145623284 145623580 -43655974 - HERVK14 LTR ERVK -1758 5485 5188 317 243 0 39 chr6 145623581 145623684 -43655870 - HERVK3 LTR ERVK -7090 153 55 3379 103 16 4 chr6 145623977 145624471 -43655083 - LTR3b LTR ERVK 0 500 1 273 234 19 75 chr6 145624471 145624578 -43654976 + HAL1 LINE L1 2380 2480 -27 362 294 91 32 chr6 145624982 145625190 -43654364 + MIR SINE MIR 23 241 -21 270 236 90 0 chr6 145625389 145625478 -43654076 - Charlie8 DNA MER1_type -2231 186 90 528 218 109 7 chr6 145626019 145626166 -43653388 - MIR SINE MIR -34 228 67 291 304 149 6 chr6 145626984 145627152 -43652402 + L3b LINE CR1 1145 1336 -247 2246 124 0 0 chr6 145628091 145628389 -43651165 + AluSx SINE Alu 1 298 -14 2344 74 7 0 chr6 145628472 145628769 -43650785 - AluY SINE Alu -12 299 1 501 92 0 0 chr6 145629479 145629544 -43650010 - AluSp SINE Alu -142 171 107 197 304 70 26 chr6 145630802 145630917 -43648637 - MIR SINE MIR -64 198 79 294 106 0 0 chr6 145631021 145631068 -43648486 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1300 173 62 26 chr6 145631071 145631343 -43648211 - AluJo SINE Alu -30 282 1 2459 71 0 3 chr6 145631466 145631774 -43647780 - AluY SINE Alu -4 307 1 549 62 0 0 chr6 145632479 145632544 -43647010 - AluSp SINE Alu -142 171 107 25 31 0 0 chr6 145634537 145634569 -43644985 + AT_rich Low_complexity Low_complexity 1 32 0 28 71 0 0 chr6 145635705 145635761 -43643793 + GC_rich Low_complexity Low_complexity 1 56 0 251 242 125 39 chr6 145636567 145636695 -43642859 - MIR SINE MIR -56 206 68 391 200 126 0 chr6 145636700 145636795 -43642759 - MIR SINE MIR 0 262 156 402 273 97 0 chr6 145636921 145637075 -43642479 + MER69A DNA AcHobo 6 174 -3 252 322 174 30 chr6 145637119 145637389 -43642165 + L3 LINE CR1 985 1293 -284 368 196 78 16 chr6 145638288 145638465 -43641089 - MLT1F LTR MaLR -42 513 248 315 130 0 0 chr6 145638475 145638529 -43641025 + (TC)n Simple_repeat Simple_repeat 2 55 0 664 262 81 18 chr6 145638560 145638817 -43640737 - MLT1H LTR MaLR -249 300 22 315 0 0 0 chr6 145639050 145639085 -43640469 + (CA)n Simple_repeat Simple_repeat 1 35 0 1162 108 17 0 chr6 145639278 145639454 -43640100 + AluSg/x SINE Alu 134 312 0 325 284 78 17 chr6 145640378 145640494 -43639060 + L2 LINE L2 3149 3271 -1 330 301 51 51 chr6 145640518 145640714 -43638840 + L1MEd LINE L1 5 200 -5919 216 391 156 8 chr6 145640722 145640850 -43638704 + MER91A DNA MER1_type 8 154 -42 1447 119 0 0 chr6 145640861 145641055 -43638499 + AluSx SINE Alu 1 194 -118 263 314 40 8 chr6 145641096 145641220 -43638334 + L1MEd LINE L1 2610 2737 -3392 1411 187 23 55 chr6 145641232 145641542 -43638012 - AluJo SINE Alu -12 300 1 469 261 98 50 chr6 145641699 145642353 -43637201 + L1MEd LINE L1 2857 3541 -2588 1413 241 25 39 chr6 145642648 145643057 -43636497 + MLT1J2 LTR MaLR 14 418 -32 212 0 36 0 chr6 145643057 145643085 -43636469 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1413 241 25 39 chr6 145643085 145643107 -43636447 + MLT1J2 LTR MaLR 418 439 -11 803 102 86 0 chr6 145644353 145644481 -43635073 + MER85 DNA T2_type 1 139 0 391 318 90 34 chr6 145644623 145644856 -43634698 - L1MC/D LINE L1 -1989 5819 5574 366 273 33 33 chr6 145645768 145645993 -43633561 - L1MC/D LINE L1 -1671 4475 4248 2049 143 21 29 chr6 145645993 145646371 -43633183 + THE1C LTR MaLR 1 375 0 366 273 33 33 chr6 145646371 145646387 -43633167 - L1MC/D LINE L1 -1897 4249 4234 707 181 9 0 chr6 145646423 145646539 -43633015 + FLAM_C SINE Alu 1 117 -16 1620 77 0 5 chr6 145646548 145646768 -43632786 - L1PA8 LINE L1 0 6172 5954 21 0 0 0 chr6 145646783 145646804 -43632750 + AT_rich Low_complexity Low_complexity 1 21 0 1474 216 126 28 chr6 145646804 145647226 -43632328 + MLT1F LTR MaLR 15 484 -58 2164 100 23 13 chr6 145647226 145647525 -43632029 + AluSp SINE Alu 1 302 -11 1474 216 126 28 chr6 145647525 145647586 -43631968 + MLT1F LTR MaLR 484 538 -4 1495 250 107 64 chr6 145647601 145648035 -43631519 - L1MC/D LINE L1 -1925 4221 3807 1851 158 20 7 chr6 145648035 145648338 -43631216 + AluJb SINE Alu 1 307 -5 1495 250 107 64 chr6 145648338 145648799 -43630755 - L1MC/D LINE L1 -2339 3807 3287 1245 179 13 5 chr6 145648820 145649044 -43630510 - AluJo SINE Alu -2 310 85 274 224 100 70 chr6 145649050 145649144 -43630410 - L1MC/D LINE L1 -2880 3266 3176 1654 195 3 10 chr6 145649144 145649436 -43630118 - AluJo SINE Alu -22 290 1 2195 87 18 0 chr6 145649443 145649749 -43629805 - AluSp SINE Alu 0 311 1 274 224 100 70 chr6 145649749 145649904 -43629650 - L1MC/D LINE L1 -2975 3171 3000 1873 247 63 71 chr6 145649989 145650686 -43628868 + L1ME3A LINE L1 4721 5422 -748 1836 109 4 0 chr6 145650686 145650952 -43628602 + L1PB1 LINE L1 5882 6148 -3 1873 247 63 71 chr6 145650952 145651708 -43627846 + L1ME3A LINE L1 5422 6153 -17 1455 83 0 0 chr6 145651708 145651888 -43627666 + AluSg/x SINE Alu 128 307 -5 2404 80 6 10 chr6 145651909 145652222 -43627332 + AluSp SINE Alu 1 312 -1 1660 179 9 28 chr6 145652555 145652873 -43626681 - AluJb SINE Alu 0 312 1 1707 175 3 52 chr6 145653241 145653567 -43625987 + AluJo SINE Alu 1 310 -2 2291 107 7 0 chr6 145654420 145654729 -43624825 + AluSq SINE Alu 1 311 -2 2231 116 0 0 chr6 145655399 145655692 -43623862 - AluSx SINE Alu -19 293 1 302 330 199 11 chr6 145655864 145656055 -43623499 + MIR SINE MIR 26 252 -10 767 159 0 0 chr6 145657232 145657386 -43622168 - FLAM_A SINE Alu 0 155 2 6457 159 37 7 chr6 145657480 145658697 -43620857 + L1PA13 LINE L1 1121 2387 -4410 * 38882 69 4 2 chr6 145658691 145664823 -43614731 + L1PA5 LINE L1 1 6149 -5 262 250 67 17 chr6 145664826 145664946 -43614608 + L1MC5 LINE L1 7786 7911 -50 15947 158 42 17 chr6 145665087 145665187 -43614367 + L1PA13 LINE L1 2403 2499 -4315 2231 129 3 0 chr6 145665187 145665498 -43614056 + AluSx SINE Alu 1 312 0 15947 158 42 17 chr6 145665498 145666117 -43613437 + L1PA13 LINE L1 2499 3101 -3713 417 39 0 0 chr6 145666117 145666168 -43613386 + (TA)n Simple_repeat Simple_repeat 2 52 0 15947 158 42 17 chr6 145666168 145666745 -43612809 + L1PA13 LINE L1 3101 3662 -3152 2000 167 3 0 chr6 145666745 145667056 -43612498 + AluSx SINE Alu 1 312 0 15947 158 42 17 chr6 145667056 145670059 -43609495 + L1PA13 LINE L1 3662 6803 -11 444 327 13 19 chr6 145670086 145670242 -43609312 + MIR SINE MIR 12 166 -96 1378 278 54 37 chr6 145670278 145670816 -43608738 + L2 LINE L2 2456 3017 -296 2366 112 0 0 chr6 145670816 145671128 -43608426 - AluSx SINE Alu 0 312 1 1378 278 54 37 chr6 145671128 145671313 -43608241 + L2 LINE L2 3017 3197 -116 6402 75 4 0 chr6 145671493 145673113 -43606441 - L1PA8A LINE L1 -1 6130 4495 462 36 0 0 chr6 145673322 145673378 -43606176 + (CA)n Simple_repeat Simple_repeat 1 56 0 2437 84 0 0 chr6 145673948 145674258 -43605296 + AluY SINE Alu 1 310 -1 2227 146 23 71 chr6 145675004 145675523 -43604031 - L1MB4 LINE L1 -2 6178 5685 400 278 118 14 chr6 145675743 145675887 -43603667 + MER5B DNA MER1_type 20 178 0 1189 243 42 53 chr6 145676238 145676616 -43602938 + MLT1A2 LTR MaLR 1 374 0 252 0 0 0 chr6 145676682 145676710 -43602844 + (TG)n Simple_repeat Simple_repeat 1 28 0 1727 184 4 0 chr6 145676710 145676988 -43602566 - AluJo SINE Alu -33 279 1 2235 259 49 25 chr6 145676995 145677666 -43601888 + MER21B LTR ERV1 126 812 -51 1079 183 21 136 chr6 145677974 145678312 -43601242 + AluYb8 SINE Alu 1 299 -9 22 0 0 0 chr6 145678314 145678336 -43601218 + AT_rich Low_complexity Low_complexity 1 22 0 1274 209 30 3 chr6 145679049 145679346 -43600208 + MER58B DNA MER1_type 37 341 0 214 350 140 0 chr6 145679786 145679886 -43599668 - L3b LINE CR1 -6 1577 1464 2162 109 0 3 chr6 145679899 145680216 -43599338 + AluSx SINE Alu 1 316 0 1718 165 0 0 chr6 145680297 145680563 -43598991 + AluJb SINE Alu 1 266 -46 2591 104 6 3 chr6 145680565 145680919 -43598635 - THE1A LTR MaLR 0 355 1 681 13 0 0 chr6 145680937 145681015 -43598539 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 636 145 40 40 chr6 145681324 145681562 -43597992 - MLT1A1 LTR MaLR -22 343 4 1809 134 70 22 chr6 145681576 145681934 -43597620 + THE1C LTR MaLR 1 375 0 609 171 47 8 chr6 145682834 145682963 -43596591 - MER58B DNA MER1_type -40 301 168 648 312 18 41 chr6 145683071 145683411 -43596143 + ERVL LTR ERVL 2661 2992 -2772 722 217 0 43 chr6 145683706 145683867 -43595687 - FRAM SINE Alu -12 154 1 23 0 0 0 chr6 145684199 145684222 -43595332 + AT_rich Low_complexity Low_complexity 1 23 0 409 128 13 0 chr6 145684532 145684610 -43594944 + MER63 DNA MER1_type 836 914 -148 1193 161 48 12 chr6 145684612 145684861 -43594693 - L1MB7 LINE L1 0 6184 5927 249 182 0 18 chr6 145684862 145684917 -43594637 - L1MB7 LINE L1 -658 5520 5467 1331 155 23 27 chr6 145684917 145685136 -43594418 - AluSx SINE Alu -90 222 5 306 189 63 21 chr6 145685137 145685232 -43594322 - L1MB7 LINE L1 -810 5336 5238 1379 103 0 53 chr6 145685234 145685257 -43594297 - HSMAR2 DNA Mariner -2 1300 1277 2387 74 14 0 chr6 145685257 145685554 -43594000 + AluY SINE Alu 1 301 -10 1379 103 0 53 chr6 145685554 145685773 -43593781 - HSMAR2 DNA Mariner -25 1277 1071 696 224 75 0 chr6 145685794 145685941 -43593613 - FAM SINE Alu -17 158 1 2213 93 3 20 chr6 145685944 145686244 -43593310 - AluSx SINE Alu -8 304 10 2202 97 3 29 chr6 145686330 145686639 -43592915 + AluSx SINE Alu 3 303 -9 604 227 8 0 chr6 145686642 145686761 -43592793 - AluJo/FLAM SINE Alu -188 124 5 3197 130 4 2 chr6 145686761 145687283 -43592271 - HSMAR2 DNA Mariner -777 525 3 708 174 8 102 chr6 145687284 145687403 -43592151 - L1MB7 LINE L1 -907 5239 5151 2305 103 0 0 chr6 145687403 145687693 -43591861 - AluSp SINE Alu -23 290 1 708 174 8 102 chr6 145687693 145687808 -43591746 - L1MB7 LINE L1 -995 5151 5027 739 193 13 0 chr6 145687808 145687958 -43591596 + MER63 DNA MER1_type 911 1062 0 1108 289 66 54 chr6 145688892 145689101 -43590453 + L1MEd LINE L1 320 525 -5723 750 166 107 0 chr6 145689101 145689270 -43590284 + MER53 DNA DNA 3 189 0 1108 289 66 54 chr6 145689270 145689816 -43589738 + L1MEd LINE L1 525 1122 -5126 1743 150 24 24 chr6 145689816 145690070 -43589484 - MER44D DNA MER2_type -1882 609 356 2133 147 0 0 chr6 145690070 145690370 -43589184 - AluSx SINE Alu -12 300 1 1743 150 24 24 chr6 145690370 145690454 -43589100 - MER44D DNA MER2_type -2134 357 1 1108 289 66 54 chr6 145690454 145690723 -43588831 + L1MEd LINE L1 1122 1386 -4862 2192 131 3 3 chr6 145691211 145691523 -43588031 + AluSx SINE Alu 1 312 0 224 54 54 0 chr6 145692431 145692468 -43587086 + A-rich Low_complexity Low_complexity 2 40 0 2335 97 3 0 chr6 145692752 145693051 -43586503 - AluSc SINE Alu -9 300 1 30 27 0 0 chr6 145693647 145693684 -43585870 + AT_rich Low_complexity Low_complexity 1 37 0 1887 172 3 3 chr6 145693835 145694137 -43585417 - AluJb SINE Alu -7 305 4 228 371 0 0 chr6 145695404 145695509 -43584045 + L2 LINE L2 2136 2240 -1074 1914 151 34 3 chr6 145695728 145696020 -43583534 - AluSx SINE Alu -11 301 1 282 367 75 45 chr6 145696490 145696959 -43582595 + L2 LINE L2 2473 2955 -359 468 138 25 0 chr6 145697026 145697106 -43582448 + MER81 DNA DNA 32 113 -1 875 132 0 7 chr6 145697302 145697454 -43582100 + (TTCC)n Simple_repeat Simple_repeat 3 153 0 2012 124 43 7 chr6 145699402 145699701 -43579853 - AluSx SINE Alu -2 310 1 377 287 75 65 chr6 145699901 145700064 -43579490 + L1ME4a LINE L1 5107 5276 -870 3041 123 27 2 chr6 145700064 145700545 -43579009 + L1PA15 LINE L1 5665 6157 -8 377 287 75 65 chr6 145700545 145700660 -43578894 + L1ME4a LINE L1 5276 5388 -758 444 298 26 61 chr6 145700759 145700906 -43578648 + L1ME4a LINE L1 5521 5672 -449 2209 124 3 9 chr6 145700906 145701221 -43578333 + AluSq SINE Alu 1 313 0 444 298 26 61 chr6 145701221 145701371 -43578183 + L1ME4a LINE L1 5672 5801 -320 2253 105 7 0 chr6 145701371 145701666 -43577888 + AluSx SINE Alu 1 297 -15 444 298 26 61 chr6 145701666 145701796 -43577758 + L1ME4a LINE L1 5801 5934 -187 23 0 0 0 chr6 145701953 145701976 -43577578 + AT_rich Low_complexity Low_complexity 1 23 0 1815 130 55 27 chr6 145702670 145702962 -43576592 - AluSp SINE Alu -13 300 1 26 50 0 0 chr6 145703291 145703331 -43576223 + AT_rich Low_complexity Low_complexity 1 40 0 645 237 85 0 chr6 145703393 145703570 -43575984 - LTR47A LTR ERVL 0 452 261 195 129 0 0 chr6 145703820 145703851 -43575703 + (T)n Simple_repeat Simple_repeat 1 31 0 212 303 167 83 chr6 145703928 145704156 -43575398 - L2 LINE L2 0 3272 3026 2335 70 0 3 chr6 145704397 145704695 -43574859 + AluY SINE Alu 1 297 -14 386 238 15 10 chr6 145704979 145705150 -43574404 - L1MC4 LINE L1 -479 7563 7289 * 742 249 93 81 chr6 145705119 145705858 -43573696 - L1MC4 LINE L1 -398 7410 6727 475 268 118 55 chr6 145706012 145706334 -43573220 - MER34 LTR ERV1 -3 539 172 1939 164 0 0 chr6 145706334 145706638 -43572916 - AluJb SINE Alu -8 304 1 475 268 118 55 chr6 145706638 145706822 -43572732 - MER34 LTR ERV1 -370 172 1 442 296 118 69 chr6 145707643 145708268 -43571286 + L1M2 LINE L1 664 1404 -5445 186 313 70 26 chr6 145709076 145709191 -43570363 - MIR SINE MIR -64 198 79 294 106 0 0 chr6 145709295 145709342 -43570212 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1300 173 62 26 chr6 145709345 145709617 -43569937 - AluJo SINE Alu -30 282 1 2270 101 0 3 chr6 145709740 145710048 -43569506 - AluY SINE Alu -4 307 1 1925 107 34 34 chr6 145710421 145710777 -43568777 - L1MA3 LINE L1 -234 6071 5716 313 301 196 34 chr6 145710777 145710986 -43568568 - L1ME LINE L1 -354 5767 5525 546 273 126 1 chr6 145710991 145711226 -43568328 + MIR SINE MIR 2 262 0 354 299 0 0 chr6 145712037 145712124 -43567430 - L2 LINE L2 0 3272 3186 304 118 78 0 chr6 145712187 145712238 -43567316 - MER94 DNA DNA -79 55 1 560 190 22 117 chr6 145712498 145712677 -43566877 - MER5B DNA MER1_type 0 178 17 1928 168 85 3 chr6 145713488 145713876 -43565678 + MSTB LTR MaLR 1 420 -6 8735 155 25 57 chr6 145713882 145715588 -43563966 + MSTB-int LTR MaLR 1 1651 0 2063 178 73 5 chr6 145715588 145715987 -43563567 + MSTB LTR MaLR 1 426 0 22 0 0 0 chr6 145716105 145716127 -43563427 + AT_rich Low_complexity Low_complexity 1 22 0 5097 39 0 0 chr6 145716127 145716696 -43562858 - SVA Other Other 0 1386 818 21 57 0 0 chr6 145717828 145717863 -43561691 + AT_rich Low_complexity Low_complexity 1 35 0 1531 177 17 35 chr6 145717927 145718215 -43561339 - AluJb SINE Alu -24 288 6 24 53 0 0 chr6 145718260 145718298 -43561256 + AT_rich Low_complexity Low_complexity 1 38 0 418 348 0 22 chr6 145718424 145718559 -43560995 - L2 LINE L2 -3 3269 3138 754 151 0 8 chr6 145718692 145718811 -43560743 + FLAM_C SINE Alu 1 118 -15 25 0 0 0 chr6 145718817 145718842 -43560712 + AT_rich Low_complexity Low_complexity 1 25 0 267 323 138 0 chr6 145719081 145719211 -43560343 - MIR3 SINE MIR -43 165 18 265 292 53 121 chr6 145719224 145719485 -43560069 - L2 LINE L2 -41 3231 2989 222 355 84 24 chr6 145719485 145719651 -43559903 - MER5A DNA MER1_type 0 189 14 2173 125 0 0 chr6 145721719 145722023 -43557531 + AluSx SINE Alu 1 304 -8 735 205 0 0 chr6 145722361 145722483 -43557071 - FLAM_A SINE Alu -10 123 2 280 217 33 0 chr6 145723025 145723085 -43556469 - L2 LINE L2 -4 3309 3248 355 264 11 0 chr6 145723156 145723243 -43556311 + MIR SINE MIR 140 227 -35 23 0 0 0 chr6 145723330 145723353 -43556201 + AT_rich Low_complexity Low_complexity 1 23 0 2157 131 3 0 chr6 145723410 145723707 -43555847 - AluSx SINE Alu -13 299 2 2218 107 3 3 chr6 145723828 145724119 -43555435 + AluSq SINE Alu 1 291 -22 2250 113 3 0 chr6 145724910 145725211 -43554343 + AluSx SINE Alu 1 302 -10 2429 61 0 7 chr6 145725213 145725509 -43554045 + AluY SINE Alu 3 296 -15 481 273 16 70 chr6 145726131 145726292 -43553262 + MER112 DNA MER1_type 32 177 -83 2191 106 10 3 chr6 145726292 145726585 -43552969 + AluSq SINE Alu 1 295 -18 481 273 16 70 chr6 145726585 145726665 -43552889 + MER112 DNA MER1_type 177 260 0 198 0 0 0 chr6 145726833 145726855 -43552699 + (T)n Simple_repeat Simple_repeat 1 22 0 903 197 107 153 chr6 145726923 145727384 -43552170 - L1MC5 LINE L1 -165 7796 7315 1711 201 27 0 chr6 145727384 145727678 -43551876 - AluJo SINE Alu -10 302 1 903 197 107 153 chr6 145727678 145728322 -43551232 - L1MC5 LINE L1 -646 7315 6742 22 56 0 0 chr6 145728676 145728712 -43550842 + AT_rich Low_complexity Low_complexity 1 36 0 1984 149 3 10 chr6 145728724 145729032 -43550522 + AluJo SINE Alu 5 310 -2 2414 67 0 22 chr6 145729125 145729439 -43550115 - AluY SINE Alu -4 307 1 869 221 44 35 chr6 145729518 145729744 -43549810 - MIR SINE MIR -1 261 34 22 0 0 0 chr6 145730124 145730146 -43549408 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr6 145730865 145730889 -43548665 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1715 166 11 0 chr6 145730892 145731170 -43548384 - AluSx SINE Alu -30 282 2 2267 71 0 0 chr6 145731443 145731757 -43547797 - AluY SINE Alu 0 314 1 615 214 241 9 chr6 145731778 145731998 -43547556 - MER5C DNA MER1_type -50 274 4 699 241 131 5 chr6 145732104 145732303 -43547251 + MER58A DNA MER1_type 1 224 0 822 145 0 0 chr6 145732750 145732867 -43546687 - FRAM SINE Alu -19 157 41 2177 144 0 0 chr6 145733727 145734039 -43545515 + AluJb SINE Alu 1 312 0 225 313 0 0 chr6 145734245 145734312 -43545242 - MIR SINE MIR -76 132 66 305 335 38 14 chr6 145734741 145734896 -43544658 + MIR SINE MIR 20 176 -56 183 100 0 0 chr6 145735356 145735386 -43544168 + (TC)n Simple_repeat Simple_repeat 2 31 0 621 189 30 30 chr6 145736205 145736369 -43543185 - MER31B LTR ERV1 -302 164 1 236 236 162 29 chr6 145737878 145738026 -43541528 + MIR SINE MIR 56 258 -4 277 91 0 91 chr6 145738746 145738801 -43540753 - MLT2D LTR ERVL -7 513 464 856 175 115 5 chr6 145738838 145739038 -43540516 - MLT2D LTR ERVL -50 364 143 1666 172 24 10 chr6 145740494 145740790 -43538764 + AluJo SINE Alu 1 300 -12 246 136 0 0 chr6 145740790 145740834 -43538720 + (GA)n Simple_repeat Simple_repeat 1 44 0 190 367 67 0 chr6 145741793 145741853 -43537701 + L2 LINE L2 3209 3272 0 297 68 0 0 chr6 145742180 145742224 -43537330 + (CATGT)n Simple_repeat Simple_repeat 5 48 0 285 275 8 42 chr6 145742296 145742416 -43537138 + CT-rich Low_complexity Low_complexity 3 118 0 1963 13 4 0 chr6 145742445 145742674 -43536880 + L1PA3 LINE L1 5926 6155 0 307 344 93 81 chr6 145743472 145743806 -43535748 - L2 LINE L2 0 3272 2935 1632 167 82 4 chr6 145744711 145744992 -43534562 - AluJo SINE Alu -9 303 1 2234 89 13 32 chr6 145745279 145745595 -43533959 + AluSg SINE Alu 1 310 0 879 218 0 0 chr6 145746811 145746967 -43532587 + FRAM SINE Alu 1 156 -20 2241 153 36 22 chr6 145747238 145747683 -43531871 - Tigger2 DNA MER2_type -1 2717 2267 371 155 0 0 chr6 145747670 145747728 -43531826 + MER8 DNA MER2_type 174 231 -8 * 964 228 45 56 chr6 145747980 145748462 -43531092 + MER39 LTR ERV1 26 565 0 840 218 109 54 chr6 145749476 145749570 -43529984 - MIR SINE MIR -10 252 165 1676 183 70 68 chr6 145749570 145750024 -43529530 - MSTB2 LTR MaLR 0 457 3 840 218 109 54 chr6 145750024 145750168 -43529386 - MIR SINE MIR -97 165 1 321 349 133 27 chr6 145750194 145750495 -43529059 + L2 LINE L2 311 643 -2671 641 307 87 9 chr6 145750558 145750776 -43528778 + MIR SINE MIR 28 262 0 480 339 47 52 chr6 145751177 145751533 -43528021 + L2 LINE L2 2765 3119 -153 2258 115 0 0 chr6 145751533 145751838 -43527716 - AluSx SINE Alu -7 305 1 480 339 47 52 chr6 145751838 145751965 -43527589 + L2 LINE L2 3119 3245 -27 1386 218 19 8 chr6 145751967 145752278 -43527276 + AluJb SINE Alu 14 327 0 201 317 154 70 chr6 145752947 145753278 -43526276 + L2 LINE L2 1762 2120 -1194 2142 86 57 0 chr6 145753320 145753600 -43525954 - AluSx SINE Alu -16 296 1 184 399 99 21 chr6 145753718 145754154 -43525400 + L2 LINE L2 2503 2972 -342 23 0 0 0 chr6 145754189 145754212 -43525342 + AT_rich Low_complexity Low_complexity 1 23 0 1853 147 0 7 chr6 145754228 145754500 -43525054 + AluSx SINE Alu 23 292 -20 3610 161 44 4 chr6 145754503 145755180 -43524374 - L1MB2 LINE L1 -2 6169 5466 2117 187 35 10 chr6 145757874 145758440 -43521114 - L1MB2 LINE L1 -710 5473 4895 2111 135 107 18 chr6 145758440 145758833 -43520721 + MSTA LTR MaLR 1 428 0 2117 187 35 10 chr6 145758833 145758885 -43520669 - L1MB2 LINE L1 -1288 4895 4846 1447 151 15 141 chr6 145758890 145759288 -43520266 - MLT1A1 LTR MaLR -17 348 1 1706 199 9 63 chr6 145759288 145759815 -43519739 - L1MB2 LINE L1 -1298 4848 4350 197 336 173 0 chr6 145760264 145760374 -43519180 - MIR3 SINE MIR -19 189 61 1800 166 0 46 chr6 145760892 145761217 -43518337 - AluJb SINE Alu -2 310 1 1826 201 56 15 chr6 145761281 145761674 -43517880 - MER47B DNA MER2_type -9 409 1 1911 160 3 22 chr6 145762721 145763039 -43516515 + AluSx SINE Alu 1 312 0 259 234 109 78 chr6 145763254 145763382 -43516172 + L2 LINE L2 3182 3313 0 372 208 0 0 chr6 145763558 145763630 -43515924 + MER116 DNA Mariner 9 80 0 1310 139 0 5 chr6 145764253 145764440 -43515114 - AluJo SINE Alu -126 186 1 13500 157 24 10 chr6 145764440 145768632 -43510922 - L1 LINE L1 -979 6586 2329 2301 105 7 0 chr6 145768632 145768928 -43510626 - AluSx SINE Alu -14 298 1 13500 157 24 10 chr6 145768928 145769037 -43510517 - L1 LINE L1 -5236 2329 2223 242 320 68 9 chr6 145769571 145769790 -43509764 - L1MC/D LINE L1 -2035 5773 5542 610 252 32 38 chr6 145769797 145770111 -43509443 - L1MEc LINE L1 -5089 1307 996 2258 81 369 9 chr6 145770116 145770563 -43508991 - LTR14B LTR ERVK 0 608 1 1506 231 27 40 chr6 145770579 145771024 -43508530 - L1MEc LINE L1 -5434 962 524 287 277 48 0 chr6 145771020 145771103 -43508451 - L1MEc LINE L1 -6117 279 193 * 611 297 24 0 chr6 145771128 145771421 -43508133 - L1MEc LINE L1 -5896 500 169 469 239 44 0 chr6 145773635 145773748 -43505806 - L2 LINE L2 -4 3309 3192 3793 31 0 0 chr6 145773795 145774283 -43505271 - L1M LINE L1 -838 5308 4828 6740 28 2 0 chr6 145774284 145775148 -43504406 + L1PA3 LINE L1 5301 6166 0 22 56 0 0 chr6 145775870 145775906 -43503648 + AT_rich Low_complexity Low_complexity 1 36 0 411 289 49 23 chr6 145776133 145776399 -43503155 - L1ME LINE L1 -326 5795 5523 335 235 74 19 chr6 145776546 145776708 -43502846 + L1ME LINE L1 5647 5817 -304 423 152 0 0 chr6 145779096 145779175 -43500379 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 221 288 15 15 chr6 145779360 145779426 -43500128 + MIR SINE MIR 81 146 -62 1694 149 6 67 chr6 145779683 145779999 -43499555 - AluJo SINE Alu -15 297 1 350 274 18 0 chr6 145780982 145781095 -43498459 + MER103 DNA DNA 4 118 -48 * 959 251 77 0 chr6 145781084 145781371 -43498183 - MLT1I LTR MaLR -50 359 46 2439 80 0 0 chr6 145781615 145781914 -43497640 - AluY SINE Alu -12 299 1 24 0 0 0 chr6 145782021 145782045 -43497509 + AT_rich Low_complexity Low_complexity 1 24 0 2429 70 0 25 chr6 145783852 145784167 -43495387 + AluY SINE Alu 5 311 0 2190 157 8 0 chr6 145784192 145784555 -43494999 - MER47A DNA MER2_type 0 366 1 21 82 0 0 chr6 145787164 145787213 -43492341 + AT_rich Low_complexity Low_complexity 1 49 0 580 222 192 0 chr6 145787272 145787439 -43492115 + MIR SINE MIR 48 246 -16 194 302 85 9 chr6 145789276 145789382 -43490172 - L3b LINE CR1 -336 1247 1134 289 187 107 0 chr6 145839922 145839997 -43439557 + MLT1L LTR MaLR 170 252 -363 371 308 81 8 chr6 145840226 145840486 -43439068 + MLT1L LTR MaLR 337 615 0 1193 120 6 0 chr6 145842447 145842684 -43436870 - AluSg/x SINE Alu -7 305 100 216 0 0 0 chr6 145843301 145843325 -43436229 + (TA)n Simple_repeat Simple_repeat 2 25 0 494 310 118 0 chr6 145844130 145844333 -43435221 + MIR SINE MIR 34 260 -2 429 20 0 0 chr6 145844471 145844521 -43435033 + (TA)n Simple_repeat Simple_repeat 2 51 0 2324 105 13 0 chr6 145844522 145844826 -43434728 - AluSg SINE Alu -2 308 1 1793 166 3 33 chr6 145844829 145845136 -43434418 - AluJo SINE Alu -14 298 1 192 302 115 42 chr6 145845472 145845568 -43433986 - MIR SINE MIR -69 139 37 398 300 67 33 chr6 145845732 145845882 -43433672 - MIR3 SINE MIR -2 206 52 3817 115 55 5 chr6 145850539 145850860 -43428694 - L1MA4 LINE L1 -11 6289 5986 336 48 0 0 chr6 145850860 145850902 -43428652 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 3817 115 55 5 chr6 145850902 145851216 -43428338 - L1MA4 LINE L1 -314 5986 5622 374 217 80 109 chr6 145851800 145851975 -43427579 + L3 LINE CR1 1402 1571 -6 390 263 36 7 chr6 145852830 145852967 -43426587 + MIR3 SINE MIR 17 157 -51 219 274 0 16 chr6 145853054 145853116 -43426438 + CT-rich Low_complexity Low_complexity 3 63 0 218 250 0 0 chr6 145853117 145853157 -43426397 - L2 LINE L2 -19 3294 3255 252 0 0 0 chr6 145853915 145853943 -43425611 + (TTA)n Simple_repeat Simple_repeat 1 28 0 624 147 0 0 chr6 145853951 145854046 -43425508 - AluJ/FLAM SINE Alu -217 95 1 23 54 0 0 chr6 145854093 145854130 -43425424 + AT_rich Low_complexity Low_complexity 1 37 0 209 225 50 0 chr6 145854345 145854385 -43425169 + L2 LINE L2 3214 3255 -17 329 220 0 0 chr6 145854459 145854509 -43425045 + AluSc SINE Alu 126 175 -124 586 115 23 0 chr6 145854509 145854596 -43424958 + AluJ/FRAM SINE Alu 216 304 -8 519 272 136 45 chr6 145854791 145855100 -43424454 + MLT1K LTR MaLR 213 549 -39 670 253 97 22 chr6 145856482 145856751 -43422803 + L3 LINE CR1 1054 1342 -235 6556 82 4 0 chr6 145857002 145858040 -43421514 - L1PA10 LINE L1 -1 6167 5123 2181 99 3 38 chr6 145858121 145858435 -43421119 + AluSp SINE Alu 1 303 -10 620 275 113 69 chr6 145859014 145859620 -43419934 - LTR50 LTR ERVL 0 795 1 30 0 0 0 chr6 145859808 145859838 -43419716 + AT_rich Low_complexity Low_complexity 1 30 0 349 317 10 10 chr6 145860776 145860877 -43418677 + MER91B DNA MER1_type 90 190 0 2714 134 24 7 chr6 145861859 145862278 -43417276 - MSTB LTR MaLR 0 426 1 511 285 32 68 chr6 145862287 145862339 -43417215 - MIR SINE MIR -14 248 196 2040 122 0 0 chr6 145862339 145862618 -43416936 - AluSx SINE Alu -13 299 21 511 285 32 68 chr6 145862618 145862786 -43416768 - MIR SINE MIR -66 196 36 246 348 118 7 chr6 145862902 145863037 -43416517 + MIR SINE MIR 2 151 -111 237 33 0 0 chr6 145863884 145863914 -43415640 + (TTG)n Simple_repeat Simple_repeat 2 31 0 36 40 0 0 chr6 145864317 145864367 -43415187 + AT_rich Low_complexity Low_complexity 1 50 0 342 306 61 103 chr6 145864885 145865196 -43414358 + L2 LINE L2 2974 3271 -1 225 154 0 0 chr6 145865202 145865241 -43414313 + GA-rich Low_complexity Low_complexity 1 39 0 290 262 117 48 chr6 145865508 145865653 -43413901 + MIR SINE MIR 66 220 -42 1885 110 53 21 chr6 145866268 145866549 -43413005 - AluSx SINE Alu -20 292 3 3517 228 39 10 chr6 145867288 145868756 -43410798 - L1ME1 LINE L1 -2 6400 4888 434 136 37 37 chr6 145868759 145868840 -43410714 - AluJ/FRAM SINE Alu -18 294 214 3352 257 70 10 chr6 145869305 145871137 -43408417 - L1ME1 LINE L1 -2728 3654 1758 580 75 0 0 chr6 145871139 145871219 -43408335 - Alu SINE Alu -8 302 223 435 249 20 80 chr6 145871225 145871581 -43407973 - L1ME1 LINE L1 -4673 1709 1274 811 157 0 0 chr6 145871719 145871840 -43407714 - FLAM_A SINE Alu -12 121 1 271 349 122 54 chr6 145871922 145872349 -43407205 + L2 LINE L2 2817 3272 0 425 303 128 0 chr6 145872407 145872595 -43406959 - MIR SINE MIR 0 262 51 21 36 0 0 chr6 145875204 145875232 -43404322 + AT_rich Low_complexity Low_complexity 1 28 0 2386 117 117 5 chr6 145875669 145876053 -43403501 - MSTA LTR MaLR -1 427 1 181 333 0 52 chr6 145876357 145876453 -43403101 - L2 LINE L2 -824 2490 2400 2361 84 7 0 chr6 145876474 145876770 -43402784 - AluSc SINE Alu -11 298 1 186 256 0 0 chr6 145876901 145876940 -43402614 - MIR3 SINE MIR -49 159 121 21 57 0 0 chr6 145879562 145879597 -43399957 + AT_rich Low_complexity Low_complexity 1 35 0 366 278 107 18 chr6 145881499 145881668 -43397886 - MIR SINE MIR -27 235 52 23 0 0 0 chr6 145881956 145881979 -43397575 + AT_rich Low_complexity Low_complexity 1 23 0 323 358 55 0 chr6 145882155 145882320 -43397234 + MIR3 SINE MIR 3 176 -32 39 80 0 0 chr6 145882743 145882831 -43396723 + AT_rich Low_complexity Low_complexity 1 88 0 1783 158 14 17 chr6 145883933 145884230 -43395324 - AluJo SINE Alu -16 296 1 1044 270 116 77 chr6 145884684 145885217 -43394337 + LTR67 LTR ERVL 2 555 -2 463 295 53 24 chr6 145885238 145885445 -43394109 - MER20 DNA MER1_type -4 215 3 1566 98 48 88 chr6 145885909 145886204 -43393350 - MER44D DNA MER2_type 0 609 57 355 140 0 0 chr6 145886246 145886296 -43393258 + Alu SINE Alu 1 50 -253 2344 90 0 0 chr6 145886296 145886597 -43392957 + AluSx SINE Alu 11 311 -1 261 279 18 18 chr6 145886756 145886867 -43392687 + MER72 LTR ERV1 371 481 -241 603 155 93 62 chr6 145886940 145887101 -43392453 + LTR45 LTR ERV1 324 525 0 1059 167 50 5 chr6 145887568 145887766 -43391788 + MER2 DNA MER2_type 1 207 -138 319 247 38 87 chr6 145887889 145887997 -43391557 + MLT1H LTR MaLR 1 66 -343 1323 206 4 4 chr6 145887997 145888235 -43391319 - MER8 DNA MER2_type 0 239 2 319 247 38 87 chr6 145888235 145888309 -43391245 + MLT1H LTR MaLR 66 142 -267 198 0 0 0 chr6 145888536 145888558 -43390996 + (A)n Simple_repeat Simple_repeat 1 22 0 308 237 105 18 chr6 145888666 145888780 -43390774 + L1ME4a LINE L1 5991 6114 -7 185 302 75 0 chr6 145888902 145888955 -43390599 - L2 LINE L2 -19 3294 3238 970 127 27 146 chr6 145889245 145889552 -43390002 - MLT1A1 LTR MaLR -108 266 1 1830 199 9 63 chr6 145889552 145890079 -43389475 - L1M4 LINE L1 -1298 4848 4350 182 240 20 0 chr6 145890285 145890335 -43389219 + L2 LINE L2 3262 3312 -1 196 336 173 0 chr6 145890528 145890638 -43388916 - MIR3 SINE MIR -19 189 61 1763 166 0 46 chr6 145891156 145891481 -43388073 - AluJb SINE Alu -2 310 1 1958 201 56 15 chr6 145891545 145891938 -43387616 - MER47B DNA MER2_type -9 409 1 1871 160 3 22 chr6 145892985 145893303 -43386251 + AluSx SINE Alu 1 312 0 253 234 109 78 chr6 145893518 145893646 -43385908 + L2 LINE L2 3182 3313 0 392 208 0 0 chr6 145893822 145893894 -43385660 + MER116 DNA Mariner 9 80 0 248 289 103 72 chr6 145894209 145894472 -43385082 + LTR67 LTR ERVL 185 455 -102 1297 139 0 5 chr6 145894517 145894704 -43384850 - AluJo SINE Alu -126 186 1 12221 160 48 11 chr6 145894704 145898741 -43380813 - L1 LINE L1 -979 6586 2326 2276 105 7 0 chr6 145898741 145899037 -43380517 - AluSx SINE Alu -14 298 1 12221 160 48 11 chr6 145899037 145899146 -43380408 - L1 LINE L1 -5239 2326 2223 299 320 68 9 chr6 145899680 145899899 -43379655 - L1MC/D LINE L1 -2035 5773 5542 671 252 32 38 chr6 145899906 145900220 -43379334 - L1MEc LINE L1 -5089 1307 996 2427 81 369 9 chr6 145900225 145900672 -43378882 - LTR14B LTR ERVK 0 608 1 1630 231 27 40 chr6 145900688 145901133 -43378421 - L1MEc LINE L1 -5434 962 524 314 277 48 0 chr6 145901129 145901212 -43378342 - L1MEc LINE L1 -6117 279 193 * 640 293 46 3 chr6 145901227 145901530 -43378024 - L1MEc LINE L1 -5886 510 169 469 239 44 0 chr6 145903744 145903857 -43375697 - L2 LINE L2 -4 3309 3192 3960 31 0 0 chr6 145903904 145904392 -43375162 - L1M LINE L1 -838 5308 4828 7047 28 2 0 chr6 145904393 145905257 -43374297 + L1PA3 LINE L1 5301 6166 0 22 56 0 0 chr6 145905979 145906015 -43373539 + AT_rich Low_complexity Low_complexity 1 36 0 482 289 49 23 chr6 145906242 145906508 -43373046 - L1ME LINE L1 -326 5795 5523 376 235 74 19 chr6 145906655 145906817 -43372737 + L1ME LINE L1 5647 5817 -304 423 152 0 0 chr6 145909205 145909284 -43370270 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 220 288 15 15 chr6 145909469 145909535 -43370019 + MIR SINE MIR 81 146 -62 1660 149 6 67 chr6 145909792 145910108 -43369446 - AluJo SINE Alu -15 297 1 382 274 18 0 chr6 145911091 145911204 -43368350 + MER103 DNA DNA 4 118 -48 * 1066 238 87 28 chr6 145911193 145911516 -43368038 - MLT1I LTR MaLR -50 359 18 2426 80 0 0 chr6 145911724 145912023 -43367531 - AluY SINE Alu -12 299 1 24 0 0 0 chr6 145912130 145912154 -43367400 + AT_rich Low_complexity Low_complexity 1 24 0 2423 70 0 25 chr6 145913961 145914276 -43365278 + AluY SINE Alu 5 311 0 2211 157 8 0 chr6 145914301 145914664 -43364890 - MER47A DNA MER2_type 0 366 1 21 82 0 0 chr6 145917273 145917322 -43362232 + AT_rich Low_complexity Low_complexity 1 49 0 585 222 192 0 chr6 145917381 145917548 -43362006 + MIR SINE MIR 48 246 -16 202 302 85 9 chr6 145919385 145919491 -43360063 - L3b LINE CR1 -336 1247 1134 232 233 67 0 chr6 145920548 145920608 -43358946 - MIR SINE MIR -41 221 158 206 114 0 29 chr6 145920604 145920639 -43358915 - L2 LINE L2 -938 2376 2343 * 339 259 0 0 chr6 145920683 145920768 -43358786 + L1ME LINE L1 5725 5809 -312 2008 109 0 68 chr6 145921461 145921782 -43357772 + AluY SINE Alu 2 300 -11 32 26 0 0 chr6 145922291 145922330 -43357224 + AT_rich Low_complexity Low_complexity 1 39 0 13962 121 49 25 chr6 145923052 145924717 -43354837 + Tigger1 DNA MER2_type 1 1739 -679 2447 68 3 7 chr6 145924717 145925024 -43354530 + AluY SINE Alu 1 306 -5 13962 121 49 25 chr6 145925024 145925721 -43353833 + Tigger1 DNA MER2_type 1739 2418 0 2090 120 3 46 chr6 145927204 145927529 -43352025 - AluSx SINE Alu -1 311 1 296 264 83 109 chr6 145928432 145928697 -43350857 + MER102b DNA MER1_type 84 341 0 180 0 0 0 chr6 145929237 145929257 -43350297 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 311 68 23 0 chr6 145929678 145929722 -43349832 + MADE1 DNA Mariner 34 78 -2 803 83 133 0 chr6 145930995 145931115 -43348439 - AluJo SINE Alu -176 136 1 2646 210 100 8 chr6 145931150 145931778 -43347776 + Charlie1a DNA MER1_type 1 686 -769 195 42 0 0 chr6 145931813 145931837 -43347717 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1922 109 0 33 chr6 145931857 145932131 -43347423 - AluSq SINE Alu -48 265 1 464 213 47 47 chr6 145932163 145932313 -43347241 - L1ME3 LINE L1 -9 6153 6004 266 125 54 0 chr6 145932317 145932373 -43347181 + Charlie1a DNA MER1_type 694 752 -703 3863 132 18 5 chr6 145932373 145933185 -43346369 - L1PA16 LINE L1 -319 5847 5026 905 153 71 0 chr6 145933185 145933368 -43346186 + Charlie1a DNA MER1_type 825 1020 -435 409 162 0 117 chr6 145933365 145933476 -43346078 + Charlie1a DNA MER1_type 1343 1440 -15 * 503 248 23 0 chr6 145934096 145934225 -43345329 + MER94 DNA DNA 3 134 0 1536 110 148 11 chr6 145935019 145935282 -43344272 + AluSg SINE Alu 1 299 -11 45 0 0 0 chr6 145935370 145935415 -43344139 + AT_rich Low_complexity Low_complexity 1 45 0 520 276 91 41 chr6 145935762 145936005 -43343549 + MIR SINE MIR 8 262 0 486 322 85 49 chr6 145936678 145937007 -43342547 - L2 LINE L2 -4 3268 2928 226 100 0 0 chr6 145937317 145937357 -43342197 - L1P4 LINE L1 -727 5436 5397 23 0 0 0 chr6 145937357 145937380 -43342174 + AT_rich Low_complexity Low_complexity 1 23 0 42874 53 1 7 chr6 145937380 145943570 -43335984 - L1PA4 LINE L1 -1 6154 3 413 358 31 47 chr6 145943573 145944017 -43335537 - L2 LINE L2 -540 2774 2338 459 0 0 0 chr6 145944080 145944131 -43335423 + (TG)n Simple_repeat Simple_repeat 2 52 0 292 269 32 11 chr6 145944423 145944516 -43335038 - L2 LINE L2 0 3313 3219 191 267 35 23 chr6 145944600 145944686 -43334868 - L2 LINE L2 -1006 2308 2222 814 261 86 61 chr6 145944906 145945266 -43334288 + MLT1I LTR MaLR 40 408 -1 1750 179 3 0 chr6 145945357 145945648 -43333906 + AluSq SINE Alu 1 292 -21 643 261 148 19 chr6 145945703 145945967 -43333587 - MLT1J LTR MaLR -213 298 1 1498 314 100 25 chr6 145945969 145946876 -43332678 - L2 LINE L2 -395 2919 1945 4795 162 30 10 chr6 145947477 145948501 -43331053 + L1MB7 LINE L1 5120 6168 -16 5788 210 61 41 chr6 145948517 145950563 -43328991 - L1M4c LINE L1 -4550 2096 14 1500 274 10 10 chr6 145950577 145951157 -43328397 + L1ME3A LINE L1 2919 3498 -2648 3315 213 16 30 chr6 145951187 145952211 -43327343 + L1ME3A LINE L1 4477 5486 -754 327 324 42 4 chr6 145952240 145952478 -43327076 + L1ME3A LINE L1 5685 5931 -239 1681 188 10 17 chr6 145952681 145952969 -43326585 + AluJo SINE Alu 1 286 -26 321 26 0 0 chr6 145952969 145953007 -43326547 + (CA)n Simple_repeat Simple_repeat 2 39 0 2117 123 3 0 chr6 145954040 145954349 -43325205 + AluSq SINE Alu 1 310 -3 2517 122 26 5 chr6 145954634 145955059 -43324495 - MER57B LTR ERV1 0 434 1 390 287 56 0 chr6 145955077 145955220 -43324334 - MIR SINE MIR -8 254 104 1711 173 91 126 chr6 145955376 145956100 -43323454 + LTR8A LTR ERV1 1 699 -28 265 224 220 42 chr6 145957026 145957267 -43322287 + L1ME LINE L1 5600 5883 -238 227 77 0 26 chr6 145957456 145957495 -43322059 + (GA)n Simple_repeat Simple_repeat 1 38 0 3223 31 13 0 chr6 145957676 145958060 -43321494 + L1PA3 LINE L1 5765 6153 -2 25 0 0 0 chr6 145958060 145958085 -43321469 + AT_rich Low_complexity Low_complexity 1 25 0 1301 173 104 69 chr6 145958085 145958518 -43321036 + LTR7 LTR ERV1 1 448 -2 14875 101 16 13 chr6 145958520 145961377 -43318177 + HERVH LTR ERV1 1 2987 -4726 795 155 20 0 chr6 145961371 145961519 -43318035 + HERVH LTR ERV1 3140 3290 -4423 * 3091 123 4 4 chr6 145961518 145962012 -43317542 + HERVH LTR ERV1 3500 3993 -3720 4041 149 0 1 chr6 145962015 145962677 -43316877 + HERVH LTR ERV1 4489 5149 -2564 1306 115 23 9 chr6 145962678 145962895 -43316659 + HERVH LTR ERV1 5600 5819 -1894 2251 92 45 16 chr6 145962895 145963274 -43316280 + HERVH LTR ERV1 7324 7713 0 1360 166 110 65 chr6 145963274 145963703 -43315851 + LTR7 LTR ERV1 1 448 -2 315 0 0 0 chr6 145964752 145964787 -43314767 + (CA)n Simple_repeat Simple_repeat 2 36 0 186 241 60 72 chr6 145965016 145965099 -43314455 + MIR3 SINE MIR 120 201 -7 830 162 0 40 chr6 145965222 145965370 -43314184 - FLAM_C SINE Alu -1 142 1 355 229 198 0 chr6 145965400 145965496 -43314058 + MIR SINE MIR 66 180 -82 2433 108 27 16 chr6 145965769 145966140 -43313414 + THE1C LTR MaLR 1 375 0 277 250 29 10 chr6 145966153 145966250 -43313304 + MIR SINE MIR 77 128 -80 476 294 79 31 chr6 145966254 145966709 -43312845 + L1ME LINE L1 5336 5812 -358 21 0 0 0 chr6 145966725 145966746 -43312808 + AT_rich Low_complexity Low_complexity 1 21 0 2305 102 0 3 chr6 145967241 145967545 -43312009 + AluSg1 SINE Alu 2 304 -5 1188 163 86 33 chr6 145967586 145967747 -43311807 + L1MA9 LINE L1 5986 6137 -175 192 40 0 0 chr6 145967747 145967772 -43311782 + (CA)n Simple_repeat Simple_repeat 1 25 0 1188 163 86 33 chr6 145967772 145967911 -43311643 + L1MA9 LINE L1 6137 6302 -10 22 0 0 0 chr6 145969029 145969051 -43310503 + AT_rich Low_complexity Low_complexity 1 22 0 296 311 36 32 chr6 145969414 145969662 -43309892 + L1ME4a LINE L1 5383 5631 -490 313 326 37 54 chr6 145969665 145969907 -43309647 + L1ME4a LINE L1 5675 5912 -209 2241 185 165 17 chr6 145969987 145970570 -43308984 + LTR65 LTR ERV1 1 669 0 320 262 74 0 chr6 145970734 145970856 -43308698 + L1ME4a LINE L1 5986 6116 -5 2142 108 7 3 chr6 145970967 145971272 -43308282 - AluSg SINE Alu -4 306 1 3234 165 44 8 chr6 145971733 145972375 -43307179 - L1MB4 LINE L1 0 6180 5516 357 130 0 0 chr6 145973285 145973339 -43306215 - MSTA LTR MaLR 0 428 375 1493 80 0 52 chr6 145973340 145973553 -43306001 - AluSg1 SINE Alu -2 310 109 761 184 234 87 chr6 145973553 145973977 -43305577 - LTR21A LTR ERV1 -19 486 1 897 72 0 0 chr6 145973977 145974088 -43305466 - AluSg1 SINE Alu -198 111 1 1782 118 156 9 chr6 145974088 145974427 -43305127 - MSTA LTR MaLR -39 389 1 242 275 114 27 chr6 145974720 145974869 -43304685 + LTR33 LTR ERVL 358 519 -2 1588 172 59 51 chr6 145975444 145975816 -43303738 - MLT1B LTR MaLR -15 375 1 343 289 79 0 chr6 145975816 145975930 -43303624 + L1ME3A LINE L1 6033 6155 -15 759 111 0 0 chr6 145975938 145976046 -43303508 - AluSp/q SINE Alu -16 297 190 271 377 62 68 chr6 145976769 145977077 -43302477 - L2 LINE L2 -42 3230 2925 600 340 130 32 chr6 145977278 145978065 -43301489 - L2 LINE L2 -710 2604 1741 636 247 12 6 chr6 145978074 145978236 -43301318 + MLT1C LTR MaLR 305 467 0 252 326 8 15 chr6 145978289 145978421 -43301133 + CT-rich Low_complexity Low_complexity 4 134 0 231 36 0 0 chr6 145978429 145978457 -43301097 + (CA)n Simple_repeat Simple_repeat 2 29 0 244 338 63 14 chr6 145978563 145978705 -43300849 - L2 LINE L2 -244 3069 2921 213 205 26 103 chr6 145978774 145978852 -43300702 + L2 LINE L2 3209 3280 -33 914 152 0 0 chr6 145978880 145979018 -43300536 + FLAM_C SINE Alu 1 138 -5 457 294 65 48 chr6 145979026 145979257 -43300297 + MIR SINE MIR 28 262 0 1506 151 103 22 chr6 145980690 145981002 -43298552 - MER1B DNA MER1_type 0 337 1 200 258 136 0 chr6 145981175 145981241 -43298313 + MIR SINE MIR 81 155 -107 278 172 302 26 chr6 145981486 145981602 -43297952 + MER5B DNA MER1_type 3 150 -28 527 204 29 15 chr6 145981632 145981769 -43297785 + L1MC5 LINE L1 7786 7924 -37 210 227 27 53 chr6 145983249 145983324 -43296230 + L3b LINE CR1 1296 1368 -215 367 283 42 36 chr6 145983901 145984067 -43295487 + L1M4b LINE L1 1353 1519 -5340 247 225 66 126 chr6 145984209 145984360 -43295194 + L1ME3A LINE L1 5972 6113 -57 1598 156 60 21 chr6 145984779 145985062 -43294492 + AluJo SINE Alu 1 294 -18 369 0 0 0 chr6 145985062 145985103 -43294451 + (TA)n Simple_repeat Simple_repeat 2 42 0 194 196 39 59 chr6 145986332 145986383 -43293171 + L2 LINE L2 3223 3272 0 515 155 36 0 chr6 145988087 145988171 -43291383 - Tigger7 DNA MER2_type -1 2490 2404 1377 191 23 4 chr6 145988198 145988460 -43291094 - Tigger7 DNA MER2_type -466 267 1 2680 103 32 7 chr6 145988500 145988906 -43290648 + MSTA LTR MaLR 13 428 0 12798 211 23 9 chr6 145989871 145995113 -43284441 + L1PA16 LINE L1 800 6201 -22 317 216 117 9 chr6 145995477 145995588 -43283966 + L1 LINE L1 4187 4309 -1837 5215 183 28 30 chr6 145995591 145996048 -43283506 + HERVL74 LTR ERVL 1637 2094 -3591 2293 85 0 0 chr6 145996048 145996363 -43283191 + AluSc SINE Alu 1 315 0 5215 183 28 30 chr6 145996363 145997538 -43282016 + HERVL74 LTR ERVL 2094 3341 -2344 694 191 26 0 chr6 145997537 145997689 -43281865 + HERVL74 LTR ERVL 3496 3651 -2034 * 315 169 124 11 chr6 145997684 145997773 -43281781 + HERVL74 LTR ERVL 3919 4017 -1668 * 1686 160 129 6 chr6 145997767 145998124 -43281430 + HERVL74 LTR ERVL 4589 4989 -696 305 154 0 0 chr6 145998124 145998176 -43281378 - Alu SINE Alu -255 53 2 852 270 111 25 chr6 145998878 145999282 -43280272 + L2 LINE L2 2875 3313 0 6819 67 2 2 chr6 145999430 146001059 -43278495 + L1PA7 LINE L1 4525 6153 -1 22 0 0 0 chr6 146001178 146001200 -43278354 + AT_rich Low_complexity Low_complexity 1 22 0 631 176 154 81 chr6 146001232 146001581 -43277973 - MLT1C LTR MaLR -12 378 48 1166 208 113 28 chr6 146001964 146002291 -43277263 - MLT1A1 LTR MaLR -9 356 2 1701 193 90 25 chr6 146002473 146002908 -43276646 + MLT1C LTR MaLR 1 463 -4 294 191 32 0 chr6 146003587 146003650 -43275904 + Tigger8 DNA MER2_type 517 581 -85 405 0 0 0 chr6 146004569 146004614 -43274940 + (CA)n Simple_repeat Simple_repeat 2 46 0 207 270 71 48 chr6 146006696 146006822 -43272732 + MIR SINE MIR 85 213 -49 566 322 89 8 chr6 146007186 146007444 -43272110 - L3 LINE CR1 -216 1361 1083 1675 180 0 23 chr6 146007514 146007820 -43271734 + AluJo SINE Alu 1 299 -13 281 305 47 62 chr6 146007825 146007953 -43271601 - L2 LINE L2 -5 3308 3183 303 181 138 103 chr6 146008174 146008290 -43271264 - L2 LINE L2 -498 2816 2697 237 384 36 54 chr6 146008610 146008834 -43270720 - L2 LINE L2 -199 3073 2854 401 323 78 44 chr6 146009005 146009324 -43270230 - L2 LINE L2 -829 2485 2156 415 364 27 4 chr6 146009622 146009847 -43269707 - MLT1K LTR MaLR -204 384 155 255 342 9 9 chr6 146009847 146009961 -43269593 + MER5A DNA MER1_type 51 164 -25 212 369 31 31 chr6 146009865 146009995 -43269559 - MER5A DNA MER1_type -57 132 3 * 1404 138 48 21 chr6 146010686 146010977 -43268577 - L1MA9 LINE L1 -1 6311 6013 875 151 0 41 chr6 146011984 146012130 -43267424 + FLAM_C SINE Alu 1 140 -3 478 317 32 27 chr6 146012493 146012679 -43266875 + MIR SINE MIR 52 238 -24 315 0 0 0 chr6 146013169 146013204 -43266350 + (TG)n Simple_repeat Simple_repeat 2 36 0 1253 157 5 0 chr6 146013204 146013402 -43266152 - AluSg/x SINE Alu -24 286 88 21 0 0 0 chr6 146013596 146013617 -43265937 + AT_rich Low_complexity Low_complexity 1 21 0 472 113 0 0 chr6 146013629 146013691 -43265863 - FLAM SINE Alu -25 118 57 234 97 0 0 chr6 146013697 146013728 -43265826 - AluSg/x SINE Alu -216 86 56 564 139 0 0 chr6 146013733 146013819 -43265735 - AluSx SINE Alu -226 86 1 191 361 52 52 chr6 146013913 146014194 -43265360 + L2 LINE L2 2418 2701 -613 977 219 32 9 chr6 146014194 146014413 -43265141 - MER58A DNA MER1_type 0 224 1 191 361 52 52 chr6 146014413 146014436 -43265118 + L2 LINE L2 2700 2722 -592 1354 126 10 20 chr6 146014623 146014821 -43264733 + AluSx SINE Alu 1 196 -116 389 215 154 40 chr6 146014821 146014970 -43264584 + MLT1K LTR MaLR 384 549 -39 687 253 97 22 chr6 146016352 146016621 -43262933 + L3 LINE CR1 1054 1342 -235 6545 82 4 0 chr6 146016872 146017910 -43261644 - L1PA10 LINE L1 -1 6167 5123 2203 99 3 38 chr6 146017991 146018305 -43261249 + AluSp SINE Alu 1 303 -10 348 229 200 0 chr6 146018884 146019024 -43260530 - LTR33A LTR ERVL 0 523 441 646 269 85 11 chr6 146019043 146019490 -43260064 - LTR50 LTR ERVL -248 547 1 30 0 0 0 chr6 146019678 146019708 -43259846 + AT_rich Low_complexity Low_complexity 1 30 0 351 317 10 10 chr6 146020646 146020747 -43258807 + MER91B DNA MER1_type 90 190 0 2729 134 24 7 chr6 146021732 146022151 -43257403 - MSTB LTR MaLR 0 426 1 521 285 32 68 chr6 146022160 146022212 -43257342 - MIR SINE MIR -14 248 196 2055 122 0 0 chr6 146022212 146022491 -43257063 - AluSx SINE Alu -13 299 21 521 285 32 68 chr6 146022491 146022659 -43256895 - MIR SINE MIR -66 196 36 246 348 118 7 chr6 146022775 146022910 -43256644 + MIR SINE MIR 2 151 -111 237 33 0 0 chr6 146023757 146023787 -43255767 + (TTG)n Simple_repeat Simple_repeat 2 31 0 36 40 0 0 chr6 146024190 146024240 -43255314 + AT_rich Low_complexity Low_complexity 1 50 0 348 306 61 103 chr6 146024758 146025069 -43254485 + L2 LINE L2 2974 3271 -1 225 154 0 0 chr6 146025075 146025114 -43254440 + GA-rich Low_complexity Low_complexity 1 39 0 287 262 117 48 chr6 146025381 146025526 -43254028 + MIR SINE MIR 66 220 -42 1896 113 53 21 chr6 146026141 146026424 -43253130 - AluSx SINE Alu -20 292 1 3261 228 39 10 chr6 146027161 146028629 -43250925 - L1ME1 LINE L1 -2 6558 5046 437 136 37 37 chr6 146028632 146028713 -43250841 - AluJ/FRAM SINE Alu -18 294 214 3051 257 70 10 chr6 146029178 146031010 -43248544 - L1ME1 LINE L1 -2728 3812 1916 584 75 0 0 chr6 146031012 146031092 -43248462 - Alu SINE Alu -8 302 223 390 255 73 21 chr6 146031099 146031291 -43248263 - L1ME1 LINE L1 -4673 1867 1666 823 157 0 0 chr6 146031592 146031713 -43247841 - FLAM_A SINE Alu -12 121 1 278 349 122 54 chr6 146031795 146032222 -43247332 + L2 LINE L2 2817 3272 0 424 303 128 0 chr6 146032280 146032468 -43247086 - MIR SINE MIR 0 262 51 21 36 0 0 chr6 146035077 146035105 -43244449 + AT_rich Low_complexity Low_complexity 1 28 0 2396 117 117 5 chr6 146035542 146035926 -43243628 - MSTA LTR MaLR -1 427 1 184 333 0 52 chr6 146036230 146036326 -43243228 - L2 LINE L2 -824 2490 2400 2378 84 7 0 chr6 146036347 146036643 -43242911 - AluSc SINE Alu -11 298 1 187 256 0 0 chr6 146036774 146036813 -43242741 - MIR3 SINE MIR -49 159 121 21 57 0 0 chr6 146039435 146039470 -43240084 + AT_rich Low_complexity Low_complexity 1 35 0 367 278 107 18 chr6 146041372 146041541 -43238013 - MIR SINE MIR -27 235 52 23 0 0 0 chr6 146041829 146041852 -43237702 + AT_rich Low_complexity Low_complexity 1 23 0 335 358 55 0 chr6 146042028 146042193 -43237361 + MIR3 SINE MIR 3 176 -32 39 80 0 0 chr6 146042616 146042704 -43236850 + AT_rich Low_complexity Low_complexity 1 88 0 1807 158 14 17 chr6 146043806 146044103 -43235451 - AluJo SINE Alu -16 296 1 1035 266 118 79 chr6 146044557 146045090 -43234464 + LTR67 LTR ERVL 2 555 -2 403 289 59 21 chr6 146045125 146045312 -43234242 - MER20 DNA MER1_type -17 202 9 1480 87 49 91 chr6 146045782 146046069 -43233485 - Tigger7 DNA MER2_type 0 2491 2217 335 140 0 0 chr6 146046119 146046169 -43233385 + Alu SINE Alu 1 50 -252 2362 90 0 0 chr6 146046169 146046470 -43233084 + AluSx SINE Alu 11 311 -1 239 233 0 14 chr6 146046667 146046740 -43232814 + MER72 LTR ERV1 410 481 -241 557 155 93 62 chr6 146046813 146046974 -43232580 + LTR45 LTR ERV1 324 525 0 992 167 50 5 chr6 146047441 146047639 -43231915 + MER2 DNA MER2_type 1 207 -138 269 247 38 87 chr6 146047762 146047870 -43231684 + MLT1H LTR MaLR 1 66 -343 1323 206 4 4 chr6 146047870 146048108 -43231446 - MER8 DNA MER2_type 0 239 2 269 247 38 87 chr6 146048108 146048182 -43231372 + MLT1H LTR MaLR 66 142 -267 198 0 0 0 chr6 146048409 146048431 -43231123 + (A)n Simple_repeat Simple_repeat 1 22 0 276 241 111 9 chr6 146048539 146048647 -43230907 + L1ME4a LINE L1 5991 6109 -12 184 302 75 0 chr6 146048775 146048828 -43230726 - L2 LINE L2 -19 3294 3238 2259 218 17 42 chr6 146049283 146049884 -43229670 + MER67B LTR ERV1 1 586 -75 1368 216 43 36 chr6 146049895 146050335 -43229219 - MER39 LTR ERV1 0 707 265 3108 78 69 38 chr6 146050836 146051047 -43228507 + MER4C LTR ERV1 1 204 -261 2429 84 0 0 chr6 146051047 146051357 -43228197 - AluSx SINE Alu -2 310 1 3108 78 69 38 chr6 146051357 146051596 -43227958 + MER4C LTR ERV1 204 465 0 899 147 15 40 chr6 146052235 146052433 -43227121 + MER61A LTR ERV1 1 193 -150 3558 64 2 7 chr6 146052433 146052883 -43226671 + LTR7 LTR ERV1 1 448 -2 19704 95 17 38 chr6 146052885 146055943 -43223611 + HERVH LTR ERV1 1 2995 -4718 958 133 7 0 chr6 146055922 146056072 -43223482 + HERVH LTR ERV1 3140 3290 -4423 * 3302 118 6 4 chr6 146056074 146056564 -43222990 + HERVH LTR ERV1 3503 3993 -3720 4466 135 3 1 chr6 146056566 146057227 -43222327 + HERVH LTR ERV1 4488 5149 -2564 1367 129 18 5 chr6 146057228 146057445 -43222109 + HERVH LTR ERV1 5600 5819 -1894 * 2523 87 45 13 chr6 146057443 146057823 -43221731 + HERVH LTR ERV1 7322 7713 0 3609 62 2 7 chr6 146057823 146058273 -43221281 + LTR7 LTR ERV1 1 448 -2 951 144 20 7 chr6 146058275 146058428 -43221126 + MER61A LTR ERV1 189 343 0 669 268 81 77 chr6 146058617 146058692 -43220862 + L1MC/D LINE L1 5318 5391 -2417 2189 105 24 0 chr6 146058692 146058988 -43220566 + AluSg SINE Alu 1 303 -7 669 268 81 77 chr6 146058988 146059144 -43220410 + L1MC/D LINE L1 5391 5545 -2263 3240 84 18 38 chr6 146059144 146059529 -43220025 + MLT2A1 LTR ERVL 1 377 -67 2284 96 0 3 chr6 146059529 146059821 -43219733 - AluSq SINE Alu -22 291 1 3240 84 18 38 chr6 146059821 146059888 -43219666 + MLT2A1 LTR ERVL 377 444 0 669 268 81 77 chr6 146059888 146060159 -43219395 + L1MC/D LINE L1 5545 5823 -1985 2350 126 118 21 chr6 146060723 146061112 -43218442 + MSTA LTR MaLR 2 428 0 866 281 15 18 chr6 146062027 146062301 -43217253 - L1ME1 LINE L1 -31 6135 5863 22 35 0 0 chr6 146062615 146062644 -43216910 + AT_rich Low_complexity Low_complexity 1 29 0 258 105 0 0 chr6 146063076 146063114 -43216440 + (CA)n Simple_repeat Simple_repeat 2 39 0 1822 102 37 98 chr6 146063594 146063919 -43215635 + AluSx SINE Alu 1 305 -7 1793 149 32 4 chr6 146064285 146064566 -43214988 - AluSx SINE Alu -23 289 1 2488 89 0 3 chr6 146065105 146065419 -43214135 + AluSp SINE Alu 1 313 0 2445 278 123 38 chr6 146065434 146065983 -43213571 + L1MEc LINE L1 63 564 -5832 1677 129 98 39 chr6 146065983 146066269 -43213285 - AluSx SINE Alu -9 303 1 2445 278 123 38 chr6 146066269 146067346 -43212208 + L1MEc LINE L1 564 1828 -4568 5478 239 79 25 chr6 146067346 146069561 -43209993 + L1MEc LINE L1 2238 4659 -1556 249 327 154 19 chr6 146070088 146070244 -43209310 + MER5A DNA MER1_type 7 183 -6 4447 190 35 37 chr6 146070514 146070643 -43208911 - L1PA14 LINE L1 0 6161 6033 2371 63 40 7 chr6 146070643 146070944 -43208610 - AluY SINE Alu 0 311 1 4447 190 35 37 chr6 146070944 146072576 -43206978 - L1PA14 LINE L1 -128 6033 4412 1471 144 12 20 chr6 146073052 146073334 -43206220 - AluSg/x SINE Alu 0 344 65 237 186 200 0 chr6 146073657 146073727 -43205827 - L2 LINE L2 -4 3309 3226 317 316 86 39 chr6 146073891 146074125 -43205429 - L2 LINE L2 -1339 1975 1731 1750 171 40 20 chr6 146074131 146074483 -43205071 + MLT1A1 LTR MaLR 7 365 0 216 252 203 8 chr6 146074516 146074639 -43204915 - L2 LINE L2 -1649 1665 1519 22 0 0 0 chr6 146075705 146075727 -43203827 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 146076087 146076108 -43203446 + AT_rich Low_complexity Low_complexity 1 21 0 806 152 5 2 chr6 146076171 146076306 -43203248 + L1PA16 LINE L1 5632 5768 -398 2334 125 15 3 chr6 146076307 146076642 -43202912 + L1PA16 LINE L1 5815 6153 -13 1727 161 21 11 chr6 146076642 146076961 -43202593 + AluSx SINE Alu 1 322 0 285 316 65 66 chr6 146077123 146077851 -43201703 + L1M4 LINE L1 3606 4332 -1814 2137 113 7 10 chr6 146078078 146078379 -43201175 - AluSx SINE Alu -12 300 1 310 216 8 104 chr6 146078578 146078712 -43200842 + L1MC5 LINE L1 7815 7935 -26 349 237 0 0 chr6 146079719 146079795 -43199759 - MIR SINE MIR -26 236 161 353 75 19 0 chr6 146080003 146080056 -43199498 + (TG)n Simple_repeat Simple_repeat 1 54 0 769 212 47 5 chr6 146080058 146080251 -43199303 + LTR37B LTR ERV1 217 417 -51 3727 53 0 7 chr6 146080372 146080823 -43198731 + LTR7 LTR ERV1 1 448 -2 20345 96 64 32 chr6 146080825 146084015 -43195539 + HERVH LTR ERV1 1 3290 -4423 3347 115 4 4 chr6 146084014 146084508 -43195046 + HERVH LTR ERV1 3500 3993 -3720 * 4329 147 1 1 chr6 146084511 146085172 -43194382 + HERVH LTR ERV1 4489 5149 -2564 1409 129 18 5 chr6 146085173 146085390 -43194164 + HERVH LTR ERV1 5600 5819 -1894 * 2550 82 45 3 chr6 146085388 146085764 -43193790 + HERVH LTR ERV1 7322 7713 0 3687 56 2 7 chr6 146085764 146086214 -43193340 + LTR7 LTR ERV1 1 448 -2 336 288 97 31 chr6 146086216 146086442 -43193112 - L1ME LINE L1 -368 5753 5513 23 92 0 0 chr6 146086895 146086960 -43192594 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr6 146087188 146087216 -43192338 + AT_rich Low_complexity Low_complexity 1 28 0 205 237 0 18 chr6 146087474 146087588 -43191966 + (TA)n Simple_repeat Simple_repeat 2 113 0 7032 99 10 6 chr6 146088369 146089356 -43190198 + MER41B-int LTR ERV1 4956 5946 0 3594 121 13 9 chr6 146089357 146089901 -43189653 + MER41B LTR ERV1 2 547 -88 1655 154 39 42 chr6 146090333 146090644 -43188910 + MER2 DNA MER2_type 36 345 0 1642 179 15 0 chr6 146091192 146091465 -43188089 - AluJo SINE Alu -25 287 11 436 301 140 6 chr6 146092322 146092555 -43186999 - MIR SINE MIR 0 262 1 883 293 66 46 chr6 146094859 146095476 -43184078 - MLT1G LTR MaLR -2 588 1 3686 62 0 7 chr6 146095876 146096327 -43183227 + LTR7 LTR ERV1 1 448 -2 20113 87 21 31 chr6 146096329 146099347 -43180207 + HERVH LTR ERV1 1 2987 -4726 870 160 7 0 chr6 146099341 146099491 -43180063 + HERVH LTR ERV1 3140 3290 -4423 * 3383 121 4 6 chr6 146099481 146099984 -43179570 + HERVH LTR ERV1 3492 3993 -3720 3038 141 12 2 chr6 146099986 146100590 -43178964 + HERVH LTR ERV1 4488 5142 -2571 2631 97 44 33 chr6 146100598 146101190 -43178364 + HERVH LTR ERV1 5600 7713 0 3604 67 0 7 chr6 146101190 146101641 -43177913 + LTR7 LTR ERV1 1 448 -2 241 211 106 25 chr6 146101770 146101948 -43177606 + L1 LINE L1 5152 5345 -801 1568 200 77 40 chr6 146101971 146102580 -43176974 - MER39 LTR ERV1 0 707 5 240 208 153 0 chr6 146102588 146102660 -43176894 + L1MC4a LINE L1 5373 5455 -707 2185 119 0 0 chr6 146102709 146102994 -43176560 - AluSx SINE Alu -27 285 1 1876 172 70 56 chr6 146103017 146103499 -43176055 + MER34B LTR ERV1 13 501 -64 401 311 117 52 chr6 146103547 146104058 -43175496 + L1MC4a LINE L1 5483 5822 -299 2170 130 0 0 chr6 146104107 146104407 -43175147 - AluSx SINE Alu -12 300 1 23 0 0 0 chr6 146105162 146105185 -43174369 + AT_rich Low_complexity Low_complexity 1 23 0 304 239 23 34 chr6 146106711 146106799 -43172755 - MER5A DNA MER1_type -93 96 10 1094 168 0 6 chr6 146106848 146107021 -43172533 + FRAM SINE Alu 1 172 -4 198 0 0 0 chr6 146107342 146107364 -43172190 + (A)n Simple_repeat Simple_repeat 1 22 0 260 264 141 25 chr6 146108503 146108624 -43170930 + MIR SINE MIR 63 197 -65 410 128 117 32 chr6 146108659 146108753 -43170801 + MER53 DNA DNA 84 185 -4 222 254 34 34 chr6 146108784 146108843 -43170711 - L2 LINE L2 -18 3254 3196 183 340 0 0 chr6 146108894 146108947 -43170607 - MIR SINE MIR -161 101 49 424 244 9 35 chr6 146109429 146109544 -43170010 - MIR SINE MIR -12 250 139 2320 227 15 72 chr6 146109583 146110247 -43169307 + MLT1E2 LTR MaLR 1 626 0 639 253 77 12 chr6 146110523 146110693 -43168861 + MIR SINE MIR 16 196 -66 242 298 0 0 chr6 146110793 146110877 -43168677 + L1PA8A LINE L1 5380 5463 -668 1145 230 109 0 chr6 146111027 146111301 -43168253 - LTR16C LTR ERVL 0 491 188 265 333 74 44 chr6 146111388 146111658 -43167896 + L1ME LINE L1 5608 5885 -277 210 143 0 0 chr6 146111706 146111755 -43167799 + (CA)n Simple_repeat Simple_repeat 1 49 0 1681 183 7 7 chr6 146113645 146113935 -43165619 - AluJo SINE Alu -21 291 2 693 195 59 0 chr6 146113946 146114064 -43165490 - FLAM_C SINE Alu -17 126 2 2537 47 0 3 chr6 146114260 146114560 -43164994 + AluY SINE Alu 1 299 -12 3911 223 42 9 chr6 146115091 146115947 -43163607 + L1MDa LINE L1 20 903 -5637 376 96 0 110 chr6 146115947 146116020 -43163534 - MLT2B1 LTR ERVL 0 520 456 460 155 6 40 chr6 146116070 146116244 -43163310 + (TA)n Simple_repeat Simple_repeat 1 168 0 2608 164 20 16 chr6 146116334 146116778 -43162776 - MLT2B3 LTR ERVL -34 520 75 412 156 0 6 chr6 146116872 146116946 -43162608 - MLT2B3 LTR ERVL -445 70 1 954 272 9 0 chr6 146116946 146117178 -43162376 + L1MDa LINE L1 899 1132 -5408 1479 192 48 13 chr6 146117179 146117492 -43162062 - MLT1B LTR MaLR 0 390 67 888 154 6 26 chr6 146117483 146117639 -43161915 - MLT1B LTR MaLR -237 153 1 * 2664 175 24 29 chr6 146117639 146118232 -43161322 + L1MDa LINE L1 1129 1718 -4822 469 303 16 43 chr6 146118286 146118474 -43161080 + MIR SINE MIR 10 192 -70 1334 222 8 0 chr6 146118482 146118748 -43160806 - MLT2C2 LTR ERVL -196 268 1 28 29 0 0 chr6 146119193 146119228 -43160326 + AT_rich Low_complexity Low_complexity 1 35 0 251 318 141 29 chr6 146119661 146119831 -43159723 - MIR3 SINE MIR -3 205 17 1934 117 18 7 chr6 146119934 146120240 -43159314 + AluSx SINE Alu 1 309 0 441 258 96 36 chr6 146120414 146120581 -43158973 - L2 LINE L2 0 3313 3137 226 180 40 20 chr6 146120939 146120989 -43158565 - MLT1K LTR MaLR -353 235 185 368 267 0 30 chr6 146121685 146121786 -43157768 - MIR SINE MIR -60 202 105 2058 117 4 0 chr6 146121851 146122168 -43157386 + AluSx SINE Alu 1 318 0 1519 78 0 5 chr6 146122432 146122624 -43156930 + AluSg/x SINE Alu 106 296 -16 787 194 112 73 chr6 146123650 146123856 -43155698 - MER20 DNA MER1_type -2 217 4 1625 174 50 23 chr6 146124036 146124335 -43155219 + AluJo SINE Alu 1 307 -5 2002 115 0 34 chr6 146124771 146125091 -43154463 + AluSq SINE Alu 1 310 0 209 354 0 13 chr6 146125091 146125170 -43154384 + MER5A DNA MER1_type 67 144 -45 530 326 60 67 chr6 146126226 146126805 -43152749 - L2 LINE L2 -1 3271 2693 1975 205 109 16 chr6 146126805 146127298 -43152256 - MER34 LTR ERV1 -3 539 1 530 326 60 67 chr6 146127298 146127311 -43152243 - L2 LINE L2 -579 2693 2681 1073 216 75 58 chr6 146127397 146127908 -43151646 + MER34B LTR ERV1 13 565 0 1447 201 58 40 chr6 146128159 146128538 -43151016 + MLT1C LTR MaLR 79 464 -3 1294 129 5 14 chr6 146129250 146129459 -43150095 - L1MA2 LINE L1 0 6304 6098 1001 264 0 9 chr6 146130203 146130419 -43149135 - MIR SINE MIR -38 224 11 2011 119 0 53 chr6 146131091 146131410 -43148144 + AluSx SINE Alu 1 302 -10 600 191 55 0 chr6 146131491 146131601 -43147953 - MER69A DNA AcHobo -9 168 53 223 348 12 99 chr6 146132790 146132951 -43146603 + L2 LINE L2 3118 3264 -8 319 264 116 66 chr6 146133039 146133281 -43146273 + L2 LINE L2 3055 3308 -5 961 152 33 16 chr6 146133346 146133530 -43146024 + MER53 DNA DNA 3 189 0 2309 111 20 0 chr6 146133555 146133861 -43145693 - AluSq SINE Alu -1 312 1 1499 247 70 30 chr6 146134562 146135089 -43144465 - MLT1E2 LTR MaLR -78 548 1 249 33 0 0 chr6 146135170 146135200 -43144354 + (TG)n Simple_repeat Simple_repeat 1 30 0 1709 189 124 56 chr6 146135357 146135787 -43143767 + MLT2B1 LTR ERVL 1 400 -120 2003 144 30 0 chr6 146135787 146136086 -43143468 - AluSx SINE Alu -3 309 2 779 57 43 7 chr6 146136086 146136226 -43143328 + (TCTA)n Simple_repeat Simple_repeat 3 147 0 1709 189 124 56 chr6 146136226 146136260 -43143294 + MLT2B1 LTR ERVL 399 498 -22 3309 124 48 25 chr6 146136261 146136768 -43142786 + L1MB2 LINE L1 5599 6122 -49 923 181 44 19 chr6 146136768 146136928 -43142626 + FAM SINE Alu 1 164 -11 3309 124 48 25 chr6 146136928 146136978 -43142576 + L1MB2 LINE L1 6122 6169 -2 2461 139 18 3 chr6 146137691 146138071 -43141483 + MLT1B LTR MaLR 5 390 0 288 53 0 0 chr6 146138572 146138610 -43140944 + (TG)n Simple_repeat Simple_repeat 2 39 0 240 100 0 0 chr6 146140476 146140516 -43139038 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 737 41 10 0 chr6 146140742 146140839 -43138715 + (GGAA)n Simple_repeat Simple_repeat 4 101 0 1320 232 108 42 chr6 146140883 146141309 -43138245 - LTR16A1 LTR ERVL -3 454 1 29 0 0 0 chr6 146141950 146141979 -43137575 + AT_rich Low_complexity Low_complexity 1 29 0 1260 171 51 94 chr6 146142109 146142153 -43137401 - LTR29 LTR ERV1 0 608 564 3724 109 48 66 chr6 146142153 146142495 -43137059 - MER4B LTR ERV1 0 610 263 2260 54 11 4 chr6 146142495 146142772 -43136782 + AluY SINE Alu 1 279 -32 450 0 0 0 chr6 146142774 146142824 -43136730 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 3724 109 48 66 chr6 146142824 146143099 -43136455 - MER4B LTR ERV1 -348 262 1 1260 171 51 94 chr6 146143099 146143412 -43136142 - LTR29 LTR ERV1 -44 564 207 3008 199 79 58 chr6 146143412 146143591 -43135963 - MER50 LTR ERV1 0 734 560 2165 115 16 0 chr6 146143591 146143895 -43135659 + AluSx SINE Alu 1 309 -3 3008 199 79 58 chr6 146143895 146144434 -43135120 - MER50 LTR ERV1 -174 560 1 1260 171 51 94 chr6 146144434 146144633 -43134921 - LTR29 LTR ERV1 -401 207 1 203 330 80 30 chr6 146145911 146146011 -43133543 + L2 LINE L2 3125 3229 -43 2203 86 162 81 chr6 146197258 146197299 -43082255 - MSTA LTR MaLR 0 428 392 2086 128 0 0 chr6 146197299 146197588 -43081966 + AluSx SINE Alu 1 289 -23 1979 153 3 6 chr6 146197596 146197909 -43081645 + AluJb SINE Alu 1 312 0 2203 86 162 81 chr6 146197909 146198254 -43081300 - MSTA LTR MaLR -42 386 1 344 257 0 14 chr6 146198688 146198762 -43080792 - Tigger5 DNA MER2_type 0 2323 2251 297 182 0 18 chr6 146198731 146198786 -43080768 - Tigger5 DNA MER2_type -2269 54 1 * 938 230 105 56 chr6 146198786 146199398 -43080156 + MER21B LTR ERV1 20 714 -149 1114 190 117 104 chr6 146199412 146200014 -43079540 - MER4C LTR ERV1 -3 462 1 252 116 29 14 chr6 146200076 146200145 -43079409 + A-rich Low_complexity Low_complexity 1 70 0 1823 216 44 8 chr6 146200585 146200973 -43078581 + MLT1C LTR MaLR 66 467 0 1230 231 112 13 chr6 146201486 146201871 -43077683 - LTR40c LTR ERVL -5 460 38 362 253 48 0 chr6 146201917 146202000 -43077554 + MER58 DNA MER1_type 3 89 -126 * 1041 148 126 4 chr6 146201997 146202227 -43077327 + MER58 DNA MER1_type 2163 2420 0 1022 269 147 12 chr6 146202676 146202996 -43076558 - MLT1G1 LTR MaLR 0 595 233 620 195 31 0 chr6 146203054 146203182 -43076372 + L1MD3 LINE L1 7864 7995 0 515 274 17 0 chr6 146203188 146203305 -43076249 - MLT1G1 LTR MaLR -452 143 25 378 143 0 0 chr6 146203358 146203421 -43076133 + (TG)n Simple_repeat Simple_repeat 2 64 0 319 314 45 22 chr6 146203975 146204354 -43075200 - L1 LINE L1 -2418 3728 3341 2004 157 23 6 chr6 146205747 146206098 -43073456 - MLT1B LTR MaLR -12 378 22 1733 139 51 14 chr6 146206671 146206966 -43072588 - AluJb SINE Alu -6 306 1 1582 207 7 3 chr6 146207443 146207742 -43071812 - AluJb SINE Alu -11 301 2 396 155 14 0 chr6 146207767 146207838 -43071716 - U4 snRNA snRNA -73 72 1 2896 271 119 13 chr6 146208590 146208797 -43070757 - L2 LINE L2 -13 3300 3116 399 21 0 0 chr6 146208797 146208845 -43070709 + (TG)n Simple_repeat Simple_repeat 1 48 0 2896 271 119 13 chr6 146208845 146209806 -43069748 - L2 LINE L2 -197 3116 1983 878 279 119 22 chr6 146210358 146210860 -43068694 - HAL1 LINE L1 -710 1797 1247 326 228 22 88 chr6 146210870 146211006 -43068548 - MLT1D LTR MaLR -398 107 1 552 238 97 90 chr6 146211008 146211148 -43068406 - HAL1 LINE L1 -1400 1107 969 315 0 0 0 chr6 146211148 146211183 -43068371 + (TG)n Simple_repeat Simple_repeat 2 36 0 552 238 97 90 chr6 146211183 146211332 -43068222 - HAL1 LINE L1 -1538 969 816 21 0 0 0 chr6 146211618 146211639 -43067915 + AT_rich Low_complexity Low_complexity 1 21 0 1250 148 0 0 chr6 146211865 146212047 -43067507 - AluJb SINE Alu -130 182 1 302 223 90 103 chr6 146212083 146212384 -43067170 - L1ME4a LINE L1 -224 5897 5601 583 265 51 0 chr6 146212395 146212591 -43066963 - L1MC5 LINE L1 -50 7911 7706 241 227 40 0 chr6 146212894 146212969 -43066585 - L1ME4a LINE L1 -517 5604 5527 22 0 0 0 chr6 146213366 146213388 -43066166 + AT_rich Low_complexity Low_complexity 1 22 0 311 326 11 11 chr6 146213397 146213492 -43066062 + L2 LINE L2 3178 3272 0 307 286 9 48 chr6 146213749 146213854 -43065700 + L2 LINE L2 2219 2319 -995 315 371 156 12 chr6 146213869 146214300 -43065254 + L2 LINE L2 2421 2913 -401 1991 158 0 0 chr6 146214445 146214729 -43064825 - AluSx SINE Alu -28 284 1 1897 179 0 10 chr6 146215084 146215392 -43064162 - AluJb SINE Alu -5 307 3 2031 162 50 72 chr6 146215423 146215797 -43063757 - MLT1C LTR MaLR 0 467 104 2153 129 0 0 chr6 146215797 146216091 -43063463 - AluSx SINE Alu -18 294 1 2031 162 50 72 chr6 146216091 146216191 -43063363 - MLT1C LTR MaLR -363 104 3 22 0 0 0 chr6 146217957 146217979 -43061575 + AT_rich Low_complexity Low_complexity 1 22 0 1634 169 9 66 chr6 146217998 146218318 -43061236 - AluJb SINE Alu -10 302 1 675 165 31 24 chr6 146218455 146218582 -43060972 - FLAM_C SINE Alu -5 128 1 1668 159 7 35 chr6 146218980 146219310 -43060244 - AluJo SINE Alu 0 322 1 1749 201 0 0 chr6 146219320 146219613 -43059941 - AluJb SINE Alu -19 293 1 253 288 192 16 chr6 146219770 146219895 -43059659 + MIR SINE MIR 50 196 -66 183 188 0 0 chr6 146219947 146219979 -43059575 + L2 LINE L2 3263 3294 -19 530 291 70 35 chr6 146220119 146220349 -43059205 - MIR SINE MIR 0 262 25 267 274 59 39 chr6 146220961 146221063 -43058491 + MIR SINE MIR 6 109 -153 2485 71 0 0 chr6 146221356 146221653 -43057901 + AluY SINE Alu 1 297 -14 687 222 108 5 chr6 146222088 146222291 -43057263 - L1ME2 LINE L1 -32 6132 5909 1327 230 44 39 chr6 146222316 146222725 -43056829 + L1ME3A LINE L1 5717 6127 -43 1998 125 33 7 chr6 146222752 146223056 -43056498 + AluSx SINE Alu 1 312 0 506 264 100 7 chr6 146223728 146223868 -43055686 + MIR SINE MIR 32 184 -78 793 161 0 0 chr6 146224036 146224154 -43055400 + FLAM_C SINE Alu 1 118 -15 21 0 0 0 chr6 146224154 146224175 -43055379 + AT_rich Low_complexity Low_complexity 1 21 0 249 320 90 0 chr6 146224175 146224275 -43055279 - MIR SINE MIR -148 114 6 520 295 8 0 chr6 146224382 146224511 -43055043 + MIR3 SINE MIR 76 205 -3 209 333 45 36 chr6 146224594 146224705 -43054849 + MIR SINE MIR 41 152 -110 4987 174 48 56 chr6 146225474 146226229 -43053325 - L1MB1 LINE L1 0 6404 5644 864 111 17 0 chr6 146226229 146226346 -43053208 - FLAM_C SINE Alu -14 119 1 4987 174 48 56 chr6 146226346 146227003 -43052551 - L1MB1 LINE L1 -760 5644 4983 1731 163 45 10 chr6 146227003 146227291 -43052263 - AluJb SINE Alu -14 298 1 4987 174 48 56 chr6 146227291 146228065 -43051489 - L1MB1 LINE L1 -1421 4983 4209 6250 134 57 32 chr6 146228065 146228161 -43051393 + Tigger3b DNA MER2_type 2 94 -2934 1766 188 0 23 chr6 146228161 146228465 -43051089 + AluJo SINE Alu 1 297 -15 6250 134 57 32 chr6 146228465 146228671 -43050883 + Tigger3b DNA MER2_type 94 293 -2735 609 133 53 26 chr6 146228671 146228784 -43050770 - FLAM_C SINE Alu -16 117 2 6250 134 57 32 chr6 146228784 146229680 -43049874 + Tigger3b DNA MER2_type 293 1231 0 4988 198 51 5 chr6 146229684 146230951 -43048603 - L1MB1 LINE L1 -2171 4211 2886 1204 246 30 8 chr6 146230969 146231339 -43048215 - L1MB1 LINE L1 -4846 1538 1161 2029 264 56 74 chr6 146231358 146232621 -43046933 - L1M3d LINE L1 -4877 1014 1 2155 114 3 7 chr6 146232963 146233270 -43046284 - AluSx SINE Alu -6 306 1 243 250 33 17 chr6 146234084 146234144 -43045410 - MER5A DNA MER1_type -1 188 128 1925 133 61 3 chr6 146234147 146234440 -43045114 + AluSx SINE Alu 1 310 -2 1159 204 35 84 chr6 146235136 146235239 -43044315 + MER58B DNA MER1_type 1 108 -2312 1724 177 7 11 chr6 146235239 146235548 -43044006 - AluJb SINE Alu 0 308 1 1159 204 35 84 chr6 146235548 146235786 -43043768 + MER58B DNA MER1_type 108 326 -15 22 0 0 0 chr6 146236626 146236648 -43042906 + AT_rich Low_complexity Low_complexity 1 22 0 2629 226 46 18 chr6 146236793 146237421 -43042133 - MER82 DNA MER2_type -6 647 2 209 136 0 23 chr6 146237421 146237465 -43042089 + (TA)n Simple_repeat Simple_repeat 2 44 0 195 188 0 0 chr6 146237499 146237547 -43042007 + (TA)n Simple_repeat Simple_repeat 1 48 0 209 265 0 0 chr6 146237635 146237684 -43041870 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 420 190 0 13 chr6 146237969 146238039 -43041515 - MER2 DNA MER2_type 0 345 275 2774 87 62 0 chr6 146238039 146238443 -43041111 + L1PA14 LINE L1 5731 6159 -2 216 86 0 0 chr6 146238455 146238490 -43041064 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1392 156 63 0 chr6 146238492 146238761 -43040793 - MER2 DNA MER2_type -57 288 3 23 54 0 0 chr6 146238851 146238888 -43040666 + AT_rich Low_complexity Low_complexity 1 37 0 2165 83 11 7 chr6 146239327 146239605 -43039949 - AluSc SINE Alu -9 300 22 1458 279 76 51 chr6 146239998 146240302 -43039252 + L2 LINE L2 2397 2692 -621 1908 110 0 47 chr6 146240302 146240631 -43038923 + AluSx SINE Alu 1 315 0 1458 279 76 51 chr6 146240631 146241118 -43038436 + L2 LINE L2 2692 3204 -109 1750 175 10 3 chr6 146241710 146242007 -43037547 + AluJo SINE Alu 1 299 -13 1221 101 0 0 chr6 146243666 146243845 -43035709 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2250 128 0 0 chr6 146243847 146244151 -43035403 - AluSx SINE Alu -8 304 1 758 311 166 30 chr6 146244664 146245365 -43034189 - L2 LINE L2 -427 2887 2092 428 318 39 14 chr6 146245933 146246136 -43033418 + MIR SINE MIR 7 213 -49 461 259 34 68 chr6 146246332 146246595 -43032959 - L1ME4a LINE L1 -27 6094 5841 1878 131 29 0 chr6 146246614 146246889 -43032665 - AluSq SINE Alu -30 283 1 1724 202 0 0 chr6 146246968 146247250 -43032304 + AluJb SINE Alu 1 282 -30 180 0 0 0 chr6 146247253 146247273 -43032281 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 265 299 58 32 chr6 146247292 146247446 -43032108 - L1ME4a LINE L1 -401 5720 5563 2253 100 0 3 chr6 146248506 146248807 -43030747 - AluY SINE Alu -11 300 1 186 326 87 11 chr6 146248875 146248967 -43030587 - L2 LINE L2 -247 3066 2968 2115 117 3 17 chr6 146249154 146249454 -43030100 + AluSx SINE Alu 1 296 -16 1726 183 7 3 chr6 146249550 146249840 -43029714 - AluSx SINE Alu -21 291 1 23 0 0 0 chr6 146250495 146250518 -43029036 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr6 146251213 146251239 -43028315 + AT_rich Low_complexity Low_complexity 1 26 0 4661 117 18 8 chr6 146251278 146252007 -43027547 - L1PA16 LINE L1 -10 6156 5421 2041 171 32 0 chr6 146252007 146252558 -43026996 + L1PA16 LINE L1 4869 5444 -722 22 35 0 0 chr6 146252559 146252588 -43026966 + AT_rich Low_complexity Low_complexity 1 29 0 12835 127 25 13 chr6 146252689 146253526 -43026028 + Tigger1 DNA MER2_type 23 849 -1569 2012 130 3 46 chr6 146253526 146253849 -43025705 + AluSx SINE Alu 1 309 -3 12835 127 25 13 chr6 146253849 146255383 -43024171 + Tigger1 DNA MER2_type 849 2418 0 2390 106 0 0 chr6 146256063 146256375 -43023179 + AluSx SINE Alu 1 312 0 419 82 38 65 chr6 146257418 146257867 -43021687 + (TA)n Simple_repeat Simple_repeat 1 436 0 639 125 19 10 chr6 146257939 146258043 -43021511 - AluSg/x SINE Alu -16 294 190 400 207 166 53 chr6 146258999 146259168 -43020386 - L2 LINE L2 0 3313 3126 1543 109 46 70 chr6 146259343 146259628 -43019926 + AluSx SINE Alu 35 312 0 234 304 78 20 chr6 146260186 146260288 -43019266 + MIR3 SINE MIR 51 158 -50 2334 91 0 7 chr6 146260390 146260687 -43018867 + AluSg SINE Alu 1 295 -15 353 281 122 22 chr6 146261268 146261407 -43018147 + MER91A DNA MER1_type 1 153 -43 2412 68 10 0 chr6 146261526 146261822 -43017732 - AluY SINE Alu -12 299 1 3088 133 82 8 chr6 146262120 146262610 -43016944 - MER1A DNA MER1_type 0 527 2 246 105 0 0 chr6 146262847 146262885 -43016669 + (TG)n Simple_repeat Simple_repeat 2 39 0 2145 104 6 50 chr6 146263696 146264013 -43015541 + AluSx SINE Alu 1 303 -9 384 279 51 44 chr6 146264729 146264887 -43014667 + MER103 DNA DNA 8 166 0 225 333 41 41 chr6 146265012 146265135 -43014419 + MER5A DNA MER1_type 53 175 -14 2315 96 0 3 chr6 146266355 146266668 -43012886 + AluSx SINE Alu 1 312 0 311 209 0 82 chr6 146266850 146266960 -43012594 + LTR67 LTR ERVL 457 557 0 21 36 0 0 chr6 146267671 146267699 -43011855 + AT_rich Low_complexity Low_complexity 1 28 0 667 177 16 16 chr6 146267881 146268005 -43011549 + FLAM_C SINE Alu 1 124 -9 25 65 0 0 chr6 146268005 146268051 -43011503 + AT_rich Low_complexity Low_complexity 1 46 0 291 360 24 6 chr6 146269538 146269702 -43009852 - MERVL LTR ERVL -1947 3538 3372 2561 186 54 4 chr6 146269714 146270210 -43009344 - Tigger1 DNA MER2_type -1897 521 1 902 281 19 13 chr6 146270210 146270523 -43009031 - L1MDa LINE L1 -1807 4733 4419 1103 155 94 65 chr6 146270526 146270780 -43008774 + Tigger3(Golem) DNA MER2_type 2 247 -2781 1727 187 0 3 chr6 146270780 146271086 -43008468 - AluSx SINE Alu 0 305 1 1103 155 94 65 chr6 146271086 146271241 -43008313 + Tigger3(Golem) DNA MER2_type 247 2248 -780 404 247 0 0 chr6 146271243 146271320 -43008234 + Tigger3(Golem) DNA MER2_type 2952 3028 -1 2596 275 60 30 chr6 146271320 146272729 -43006825 - L1MDa LINE L1 -2111 4429 2979 371 295 19 0 chr6 146272745 146272850 -43006704 - U6 snRNA snRNA 0 107 1 509 182 30 0 chr6 146272850 146272949 -43006605 - L1MDa LINE L1 -3546 2994 2893 23 54 0 0 chr6 146272950 146272987 -43006567 + AT_rich Low_complexity Low_complexity 1 37 0 1339 199 93 64 chr6 146276026 146276789 -43002765 - L1MDa LINE L1 -3634 2906 2122 235 313 8 15 chr6 146276881 146277015 -43002539 - L1MDa LINE L1 -5480 1060 928 249 261 11 76 chr6 146277677 146277691 -43001863 - L1MDa LINE L1 -5954 576 563 2408 120 0 47 chr6 146277691 146278073 -43001481 + THE1B LTR MaLR 1 364 0 249 261 11 76 chr6 146278073 146278150 -43001404 - L1MDa LINE L1 -5967 563 491 41 48 0 0 chr6 146278223 146278285 -43001269 + AT_rich Low_complexity Low_complexity 1 62 0 414 235 0 0 chr6 146278452 146278533 -43001021 - MER47A DNA MER2_type -1 365 285 748 214 0 35 chr6 146278558 146278703 -43000851 - FAM SINE Alu -45 140 1 1837 152 3 0 chr6 146278703 146279000 -43000554 - MER47A DNA MER2_type -68 298 1 4705 195 127 5 chr6 146279795 146280715 -42998839 + L1PA15-16 LINE L1 499 1530 -5319 344 307 0 0 chr6 146280692 146280767 -42998787 - L1PA15-16 LINE L1 -5793 1056 982 * 29 28 0 0 chr6 146281405 146281441 -42998113 + AT_rich Low_complexity Low_complexity 1 36 0 2131 108 0 7 chr6 146281443 146281752 -42997802 + AluSx SINE Alu 1 307 0 22 70 0 0 chr6 146281951 146281994 -42997560 + AT_rich Low_complexity Low_complexity 1 43 0 486 0 0 0 chr6 146282108 146282162 -42997392 + (TG)n Simple_repeat Simple_repeat 2 55 0 23 54 0 0 chr6 146282398 146282435 -42997119 + AT_rich Low_complexity Low_complexity 1 37 0 2046 184 3 0 chr6 146282528 146282875 -42996679 + MER7A DNA MER2_type 1 346 0 27 49 0 0 chr6 146283238 146283279 -42996275 + AT_rich Low_complexity Low_complexity 1 41 0 953 79 0 0 chr6 146283510 146283636 -42995918 - L1PA12 LINE L1 0 6168 6043 1029 269 20 66 chr6 146283650 146284059 -42995495 - L2 LINE L2 -12 3301 2912 351 0 0 0 chr6 146284139 146284178 -42995376 + (CA)n Simple_repeat Simple_repeat 2 40 0 2022 140 0 10 chr6 146285341 146285641 -42993913 - AluSx SINE Alu -15 297 1 641 228 16 0 chr6 146286655 146286778 -42992776 - FLAM_A SINE Alu -8 125 1 243 271 94 0 chr6 146288179 146288264 -42991290 - MIR SINE MIR -84 178 86 628 235 176 0 chr6 146288325 146288478 -42991076 + MER5A DNA MER1_type 10 189 0 234 0 0 0 chr6 146288559 146288585 -42990969 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 252 0 0 0 chr6 146288584 146288612 -42990942 + (CA)n Simple_repeat Simple_repeat 1 28 0 811 224 78 0 chr6 146289131 146289310 -42990244 + MIR SINE MIR 44 236 -26 416 208 223 23 chr6 146289347 146289477 -42990077 + MIR SINE MIR 104 259 -3 239 296 14 0 chr6 146289494 146289565 -42989989 - L1ME LINE L1 -358 5808 5737 1765 211 17 14 chr6 146289603 146289627 -42989927 - MLT1A1 LTR MaLR 0 365 343 438 73 0 167 chr6 146289627 146289683 -42989871 - MADE1 DNA Mariner 0 80 45 1984 119 0 56 chr6 146289683 146289986 -42989568 + AluSx SINE Alu 1 286 -26 438 73 0 167 chr6 146289986 146290025 -42989529 - MADE1 DNA Mariner -35 45 1 1765 211 17 14 chr6 146290025 146290361 -42989193 - MLT1A1 LTR MaLR -22 343 4 329 243 32 122 chr6 146290538 146290727 -42988827 + MIR SINE MIR 90 261 -1 247 394 57 34 chr6 146291335 146291510 -42988044 - L2 LINE L2 -4 3268 3090 282 282 122 32 chr6 146291607 146291795 -42987759 + L1M4 LINE L1 4955 5159 -987 2254 115 3 0 chr6 146292030 146292335 -42987219 + AluSq SINE Alu 1 306 -7 239 179 0 26 chr6 146293801 146293879 -42985675 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 681 257 37 0 chr6 146295194 146295381 -42984173 - HAL1 LINE L1 -759 1748 1555 664 212 98 44 chr6 146295378 146295390 -42984164 - HAL1 LINE L1 -1274 1233 1223 * 2223 114 3 0 chr6 146295390 146295689 -42983865 + AluSx SINE Alu 1 300 -12 664 212 98 44 chr6 146295689 146295973 -42983581 - HAL1 LINE L1 -1284 1223 921 871 260 131 26 chr6 146295977 146296365 -42983189 - HAL1 LINE L1 -1640 867 439 368 245 248 36 chr6 146296376 146296654 -42982900 - HAL1 LINE L1 -2149 358 22 25 31 0 0 chr6 146296917 146296949 -42982605 + AT_rich Low_complexity Low_complexity 1 32 0 1954 129 29 0 chr6 146297181 146297461 -42982093 - AluSx SINE Alu -24 288 1 378 0 0 0 chr6 146297467 146297509 -42982045 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1967 100 30 0 chr6 146297512 146297783 -42981771 - AluSg SINE Alu -31 279 1 349 132 0 0 chr6 146298858 146298911 -42980643 + U6 snRNA snRNA 1 53 -54 180 0 0 0 chr6 146298916 146298936 -42980618 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 210 37 0 0 chr6 146299025 146299052 -42980502 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2138 100 7 17 chr6 146299371 146299672 -42979882 + AluSx SINE Alu 1 298 -14 723 195 16 0 chr6 146299819 146299947 -42979607 + FLAM_C SINE Alu 1 130 -3 728 174 8 15 chr6 146300231 146300363 -42979191 + FLAM_A SINE Alu 2 132 -1 508 191 48 0 chr6 146300412 146300517 -42979037 - L1MB1 LINE L1 -232 5936 5827 1383 157 4 0 chr6 146300517 146300750 -42978804 + L1MB1 LINE L1 5932 6167 -1 455 277 138 21 chr6 146300771 146300959 -42978595 - MIR SINE MIR -49 213 4 2625 91 6 6 chr6 146301015 146301377 -42978177 - THE1B LTR MaLR -2 362 1 1531 214 58 31 chr6 146301499 146301947 -42977607 - MLT1C LTR MaLR -7 460 1 21 0 0 0 chr6 146302011 146302032 -42977522 + AT_rich Low_complexity Low_complexity 1 21 0 638 282 107 0 chr6 146303768 146303974 -42975580 - MIR SINE MIR -21 241 14 216 0 0 0 chr6 146304350 146304374 -42975180 + (T)n Simple_repeat Simple_repeat 1 24 0 824 137 0 15 chr6 146304545 146304676 -42974878 + FLAM_C SINE Alu 1 129 -4 221 221 0 29 chr6 146304695 146304763 -42974791 + (TA)n Simple_repeat Simple_repeat 1 66 0 1290 158 17 4 chr6 146305436 146305670 -42973884 - L1MA6 LINE L1 -5 6295 6059 228 35 0 0 chr6 146305790 146305819 -42973735 + (CA)n Simple_repeat Simple_repeat 2 30 0 226 333 65 37 chr6 146305971 146306079 -42973475 - L2 LINE L2 -6 3266 3156 207 0 0 0 chr6 146307354 146307377 -42972177 + (CAA)n Simple_repeat Simple_repeat 2 24 0 322 262 203 53 chr6 146308043 146308230 -42971324 + MIR SINE MIR 1 215 -47 1784 142 33 7 chr6 146308306 146308614 -42970940 + AluSx SINE Alu 1 315 0 254 316 0 0 chr6 146308936 146309012 -42970542 + CT-rich Low_complexity Low_complexity 1 76 0 297 0 0 0 chr6 146309559 146309592 -42969962 + (CA)n Simple_repeat Simple_repeat 2 34 0 187 305 34 34 chr6 146309854 146309972 -42969582 - L2 LINE L2 -1265 2049 1932 21 0 0 0 chr6 146310020 146310041 -42969513 + AT_rich Low_complexity Low_complexity 1 21 0 350 272 61 85 chr6 146310463 146310593 -42968961 + L1MC/D LINE L1 5486 5609 -2199 1783 109 117 8 chr6 146310593 146310859 -42968695 + AluSx SINE Alu 1 295 -17 350 272 61 85 chr6 146310859 146310974 -42968580 + L1MC/D LINE L1 5609 5725 -2083 359 314 174 3 chr6 146312136 146312429 -42967125 + L1MC4a LINE L1 5578 5920 -1888 964 189 50 40 chr6 146312431 146312571 -42966983 - MER58A DNA MER1_type -2196 224 80 1773 112 60 91 chr6 146312571 146312956 -42966598 - THE1C LTR MaLR -2 373 1 964 189 50 40 chr6 146312956 146313037 -42966517 - MER58A DNA MER1_type -2340 80 1 1196 108 0 0 chr6 146313805 146313962 -42965592 - AluSc SINE Alu -22 287 131 872 151 0 8 chr6 146314270 146314396 -42965158 + AluSq/x SINE Alu 1 125 -187 2827 254 110 22 chr6 146314396 146315601 -42963953 - L1MC4 LINE L1 -40 8002 6692 3191 131 30 59 chr6 146315637 146315947 -42963607 + MER49 LTR ERV1 1 286 -637 2082 107 0 4 chr6 146315947 146316270 -42963284 - AluSg SINE Alu 0 322 1 3191 131 30 59 chr6 146316270 146316586 -42962968 + MER49 LTR ERV1 286 610 -313 256 128 0 0 chr6 146316586 146316625 -42962929 - 5S rRNA rRNA -82 39 1 * 1796 170 18 9 chr6 146316622 146316952 -42962602 + MER49 LTR ERV1 591 923 0 2109 230 129 49 chr6 146316961 146317589 -42961965 - L1MC4a LINE L1 -1212 6596 5873 1771 157 0 31 chr6 146317589 146317883 -42961671 - AluJb SINE Alu -4 308 24 2109 230 129 49 chr6 146317883 146318151 -42961403 - L1MC4a LINE L1 -1935 5873 5628 22 35 0 0 chr6 146318248 146318277 -42961277 + AT_rich Low_complexity Low_complexity 1 29 0 650 290 68 9 chr6 146320224 146320445 -42959109 + MIR SINE MIR 2 235 -27 637 218 15 76 chr6 146321163 146321360 -42958194 - L2 LINE L2 0 3313 3129 2137 118 0 9 chr6 146321360 146321675 -42957879 + AluSx SINE Alu 1 312 0 778 169 0 0 chr6 146321730 146321878 -42957676 + AluJb SINE Alu 159 306 0 294 339 52 0 chr6 146321918 146322033 -42957521 - L2 LINE L2 -243 3070 2950 1602 152 6 82 chr6 146322147 146322475 -42957079 + AluSx SINE Alu 1 303 -9 283 206 0 0 chr6 146322642 146322705 -42956849 - MER116 DNA Mariner -9 71 9 687 232 16 0 chr6 146322777 146322967 -42956587 - L1MD3 LINE L1 -19 7976 7784 801 172 0 6 chr6 146324232 146324389 -42955165 - L1MA9 LINE L1 -38 6274 6119 360 0 0 0 chr6 146324694 146324734 -42954820 + (CA)n Simple_repeat Simple_repeat 1 40 0 312 245 143 0 chr6 146325692 146325790 -42953764 - MIR SINE MIR -29 233 122 587 126 19 0 chr6 146326671 146326774 -42952780 + CT-rich Low_complexity Low_complexity 3 107 0 2028 149 0 16 chr6 146326776 146327091 -42952463 - AluSx SINE Alu -2 310 1 27 0 0 0 chr6 146327094 146327121 -42952433 + AT_rich Low_complexity Low_complexity 1 27 0 2179 131 25 43 chr6 146327286 146327683 -42951871 + MLT1B LTR MaLR 1 390 0 346 305 114 15 chr6 146327863 146327994 -42951560 - L2 LINE L2 0 3272 3129 188 35 35 0 chr6 146328123 146328152 -42951402 + (TG)n Simple_repeat Simple_repeat 2 31 0 308 376 0 9 chr6 146328254 146328363 -42951191 + MIR SINE MIR 24 131 -77 325 311 53 23 chr6 146328789 146328921 -42950633 + MIR SINE MIR 119 254 -8 400 291 78 39 chr6 146329359 146329795 -42949759 + L1ME4a LINE L1 5643 6095 -26 478 314 15 0 chr6 146330770 146330907 -42948647 + MIR SINE MIR 110 248 -14 2251 119 0 0 chr6 146332141 146332452 -42947102 + AluSx SINE Alu 1 311 -1 202 206 206 0 chr6 146332458 146332521 -42947033 + MIR SINE MIR 176 251 -11 274 306 67 52 chr6 146332534 146332802 -42946752 - L3 LINE CR1 -286 1291 1020 2026 116 42 100 chr6 146332825 146333048 -42946506 + MSTA LTR MaLR 1 187 -241 2194 102 9 22 chr6 146333048 146333363 -42946191 + AluSp SINE Alu 3 313 0 2026 116 42 100 chr6 146333363 146333587 -42945967 + MSTA LTR MaLR 187 422 -6 258 250 150 10 chr6 146333742 146333842 -42945712 - L3 LINE CR1 -1113 464 351 228 35 0 0 chr6 146333852 146333881 -42945673 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 238 216 0 0 chr6 146333901 146333952 -42945602 + L2 LINE L2 3222 3272 0 2054 124 0 3 chr6 146334117 146334408 -42945146 - AluSx SINE Alu -22 290 1 21 0 0 0 chr6 146334925 146334946 -42944608 + AT_rich Low_complexity Low_complexity 1 21 0 384 281 37 7 chr6 146335099 146335234 -42944320 - MIR3 SINE MIR -67 141 3 1831 271 65 49 chr6 146335245 146336163 -42943391 - L2 LINE L2 0 3313 2375 1809 144 0 85 chr6 146336163 146336504 -42943050 + AluJo SINE Alu 1 312 0 1831 271 65 49 chr6 146336504 146336598 -42942956 - L2 LINE L2 -938 2375 2284 407 209 0 170 chr6 146336764 146336917 -42942637 + L2 LINE L2 3187 3313 0 4487 126 20 9 chr6 146337467 146338149 -42941405 - LTR8 LTR ERV1 0 691 2 297 263 100 19 chr6 146338836 146338996 -42940558 + MIR SINE MIR 80 252 -10 2200 113 7 0 chr6 146339462 146339755 -42939799 - AluSx SINE Alu -17 295 1 1117 277 91 11 chr6 146340140 146340609 -42938945 + L2 LINE L2 2794 3300 -13 1813 100 11 0 chr6 146341099 146341369 -42938185 - L1PA13 LINE L1 -3 6160 5888 548 139 0 0 chr6 146341612 146341691 -42937863 - AluJ/FLAM SINE Alu -229 83 5 216 0 0 0 chr6 146341782 146341806 -42937748 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2019 154 0 0 chr6 146342609 146342907 -42936647 + AluSx SINE Alu 3 300 -12 21 0 0 0 chr6 146343628 146343649 -42935905 + AT_rich Low_complexity Low_complexity 1 21 0 2124 144 0 0 chr6 146343744 146344056 -42935498 + AluSq SINE Alu 1 312 -1 216 0 0 0 chr6 146344594 146344618 -42934936 + (TAA)n Simple_repeat Simple_repeat 3 26 0 21 57 0 0 chr6 146345216 146345251 -42934303 + AT_rich Low_complexity Low_complexity 1 35 0 380 340 26 19 chr6 146346157 146346313 -42933241 - MIR SINE MIR -99 163 7 21 0 0 0 chr6 146347008 146347029 -42932525 + AT_rich Low_complexity Low_complexity 1 21 0 2099 304 46 21 chr6 146347039 146348622 -42930932 + HERV16 LTR ERVL 732 2418 -2578 2769 88 11 11 chr6 146348675 146349050 -42930504 - THE1C LTR MaLR 0 375 1 1753 199 20 75 chr6 146349250 146349743 -42929811 - MLT1C LTR MaLR 0 467 2 661 163 32 8 chr6 146349777 146349900 -42929654 + FLAM_A SINE Alu 1 126 -7 190 346 70 19 chr6 146349992 146350148 -42929406 - L2 LINE L2 -2420 894 731 1019 234 10 12 chr6 146350384 146350669 -42928885 - L1MC4 LINE L1 -735 7226 6967 1323 209 110 29 chr6 146350972 146351424 -42928130 + MLT1G LTR MaLR 13 528 -62 1611 164 119 0 chr6 146351424 146351734 -42927820 - MER7A DNA MER2_type 0 346 2 1323 209 110 29 chr6 146351734 146351803 -42927751 + MLT1G LTR MaLR 528 590 0 312 256 94 28 chr6 146352055 146352235 -42927319 + L1ME LINE L1 5292 5483 -2325 887 231 95 16 chr6 146352236 146352478 -42927076 + MIR SINE MIR 2 262 0 345 280 104 45 chr6 146352513 146352781 -42926773 + L1ME LINE L1 5515 5798 -323 400 274 71 74 chr6 146354221 146354531 -42925023 + L2 LINE L2 3005 3313 0 1972 114 0 0 chr6 146354725 146354979 -42924575 + AluSx SINE Alu 1 254 -58 349 250 0 22 chr6 146354984 146355076 -42924478 - L1MC4 LINE L1 -1339 6703 6614 230 247 24 0 chr6 146355082 146355167 -42924387 - L1MC4 LINE L1 -1341 6701 6615 602 224 12 0 chr6 146355168 146355329 -42924225 + (CATATA)n Simple_repeat Simple_repeat 6 168 0 253 240 62 21 chr6 146355338 146355434 -42924120 + L1MC4 LINE L1 6616 6715 -1327 26 30 0 0 chr6 146355552 146355585 -42923969 + AT_rich Low_complexity Low_complexity 1 33 0 2355 88 0 3 chr6 146355602 146355907 -42923647 - AluY SINE Alu -7 304 1 283 357 50 14 chr6 146356490 146356630 -42922924 + L2 LINE L2 2917 3061 -211 482 163 0 0 chr6 146356918 146356998 -42922556 + MADE1 DNA Mariner 1 80 0 259 387 35 42 chr6 146357328 146357470 -42922084 + L2 LINE L2 3107 3247 -25 901 245 89 45 chr6 146357578 146357832 -42921722 - HAL1 LINE L1 -2001 506 226 2043 115 7 0 chr6 146357832 146358111 -42921443 - AluSg SINE Alu -29 281 1 901 245 89 45 chr6 146358111 146358260 -42921294 - HAL1 LINE L1 -2281 226 85 1350 206 63 14 chr6 146358266 146358553 -42921001 + AluJo SINE Alu 1 301 -11 22 35 0 0 chr6 146358617 146358646 -42920908 + AT_rich Low_complexity Low_complexity 1 29 0 254 128 43 0 chr6 146358870 146358917 -42920637 + MLT1C LTR MaLR 2 50 -417 543 221 23 70 chr6 146358918 146359048 -42920506 - L1MDa LINE L1 -2820 3720 3606 1431 149 51 78 chr6 146359048 146359344 -42920210 + AluJb SINE Alu 2 289 -23 543 221 23 70 chr6 146359344 146359471 -42920083 - L1MDa LINE L1 -2934 3606 3475 1978 152 0 7 chr6 146359473 146359775 -42919779 - AluJb SINE Alu -12 300 1 1061 279 64 35 chr6 146359833 146360114 -42919440 - L1MDa LINE L1 -4486 2235 1964 1947 149 133 13 chr6 146360114 146360496 -42919058 - MSTA LTR MaLR 0 428 1 1061 279 64 35 chr6 146360496 146360924 -42918630 - L1MDa LINE L1 -4757 1964 1448 242 313 93 27 chr6 146363023 146363173 -42916381 + Charlie8 DNA MER1_type 1 160 -2257 329 252 74 15 chr6 146363449 146363584 -42915970 + L1ME1 LINE L1 1292 1434 -5425 192 152 0 0 chr6 146363601 146363634 -42915920 + (TA)n Simple_repeat Simple_repeat 2 34 0 1346 260 166 39 chr6 146363643 146365153 -42914401 + L1ME1 LINE L1 2583 4316 -2641 1834 168 13 10 chr6 146365153 146365457 -42914097 - AluJb SINE Alu -7 305 1 1346 260 166 39 chr6 146365457 146365689 -42913865 + L1ME1 LINE L1 4316 4517 -2440 * 3389 177 34 117 chr6 146365666 146367755 -42911799 + L1ME1 LINE L1 4962 6872 -105 432 43 45 0 chr6 146367885 146368007 -42911547 + (CATTC)n Satellite Satellite 1 127 0 870 157 0 0 chr6 146368022 146368200 -42911354 + (CATTC)n Satellite Satellite 1 178 0 1120 78 6 6 chr6 146368223 146368402 -42911152 + (CATTC)n Satellite Satellite 2 180 0 1032 123 3 14 chr6 146368427 146368801 -42910753 + (CATTC)n Satellite Satellite 1 369 0 597 184 0 0 chr6 146368822 146368980 -42910574 + (CATTC)n Satellite Satellite 2 159 0 1077 110 3 3 chr6 146369005 146369340 -42910214 + (CATTC)n Satellite Satellite 1 335 0 798 142 0 12 chr6 146369356 146369606 -42909948 + (CATTC)n Satellite Satellite 1 246 0 1131 93 0 15 chr6 146369619 146369887 -42909667 + (CATTC)n Satellite Satellite 1 263 0 195 42 0 0 chr6 146369908 146369932 -42909622 + (CATTC)n Satellite Satellite 2 25 0 4046 183 57 25 chr6 146369932 146371020 -42908534 - L1 LINE L1 -1482 4664 3378 2041 128 14 0 chr6 146371020 146371309 -42908245 - AluSx SINE Alu -19 293 1 4046 183 57 25 chr6 146371309 146371734 -42907820 - L1 LINE L1 -2768 3378 2968 2310 76 0 23 chr6 146371735 146372037 -42907517 - AluY SINE Alu -16 295 1 708 283 11 0 chr6 146372150 146372415 -42907139 + L1M4 LINE L1 4133 4400 -1746 180 245 38 38 chr6 146372614 146372667 -42906887 - MIR SINE MIR -56 152 100 828 224 37 58 chr6 146372997 146373376 -42906178 - MER66A LTR ERV1 -40 438 68 2392 81 0 0 chr6 146373956 146374251 -42905303 + AluSg SINE Alu 1 295 -15 303 251 37 63 chr6 146375799 146376047 -42903507 - MLT1H LTR MaLR 0 549 311 3726 119 7 11 chr6 146377669 146378232 -42901322 - LTR6A LTR ERV1 0 564 4 2197 140 93 5 chr6 146378313 146378712 -42900842 - MER57B LTR ERV1 0 434 1 1284 135 131 0 chr6 146378712 146378941 -42900613 - MER57B-int LTR ERV1 0 7537 7279 702 115 23 31 chr6 146378941 146379071 -42900483 - LTR54B LTR ERV1 -367 131 3 2195 117 0 0 chr6 146379086 146379377 -42900177 + AluY SINE Alu 1 291 -20 629 164 9 0 chr6 146379378 146379488 -42900066 - MER57B-int LTR ERV1 -395 7142 7032 2203 159 33 5 chr6 146380472 146380868 -42898686 - MER57B-int LTR ERV1 -470 7067 6661 * 7679 124 34 38 chr6 146380862 146381821 -42897733 - MER57B-int LTR ERV1 -1351 6186 5224 2034 124 7 34 chr6 146381821 146382119 -42897435 - AluSx SINE Alu -22 290 1 7679 124 34 38 chr6 146382119 146382432 -42897122 - MER57B-int LTR ERV1 -2313 5224 4918 2138 98 11 3 chr6 146382432 146382719 -42896835 + AluY SINE Alu 5 293 -18 7679 124 34 38 chr6 146382719 146382844 -42896710 - MER57B-int LTR ERV1 -2619 4918 4794 1173 110 5 26 chr6 146382971 146383980 -42895574 + (CATTC)n Satellite Satellite 1 988 0 1050 135 0 0 chr6 146384001 146384452 -42895102 + (CATTC)n Satellite Satellite 1 451 0 929 123 6 0 chr6 146384479 146384658 -42894896 + (CATTC)n Satellite Satellite 1 180 0 330 107 0 0 chr6 146384679 146384735 -42894819 + (CATTC)n Satellite Satellite 2 57 0 884 130 0 27 chr6 146384748 146384933 -42894621 + (CATTC)n Satellite Satellite 1 180 0 890 131 0 27 chr6 146384964 146385147 -42894407 + (CATTC)n Satellite Satellite 2 179 0 1173 82 0 0 chr6 146385164 146385512 -42894042 + (CATTC)n Satellite Satellite 1 348 0 1242 117 1 6 chr6 146385530 146386344 -42893210 + (CATTC)n Satellite Satellite 1 810 0 345 93 0 0 chr6 146386367 146386421 -42893133 + (CATTC)n Satellite Satellite 2 55 0 287 242 20 20 chr6 146387705 146387804 -42891750 - L1MEd LINE L1 -5091 1028 930 10655 40 1 1 chr6 146387862 146389945 -42889609 - L1PA5 LINE L1 -3 6151 4068 36177 44 20 82 chr6 146389961 146396534 -42883020 - L1PA3 LINE L1 0 6155 1 30571 58 2 5 chr6 146396522 146400621 -42878933 - L1PA5 LINE L1 -2053 4093 7 * 750 289 62 3 chr6 146400661 146400965 -42878589 - L1M4 LINE L1 -1874 4272 3951 825 53 0 0 chr6 146400989 146401103 -42878451 - L1PA4 LINE L1 -182 5973 5860 * 1138 236 82 36 chr6 146401079 146401103 -42878451 - L1M4 LINE L1 -2177 3969 3948 1306 54 0 6 chr6 146401103 146401268 -42878286 + L1PA4 LINE L1 5986 6150 -5 1138 236 82 36 chr6 146401268 146401535 -42878019 - L1M4 LINE L1 -2198 3948 3647 2058 197 58 54 chr6 146401535 146401571 -42877983 - MLT2B1 LTR ERVL 0 520 486 270 0 0 0 chr6 146401571 146401601 -42877953 + (TG)n Simple_repeat Simple_repeat 2 31 0 2058 197 58 54 chr6 146401601 146402082 -42877472 - MLT2B1 LTR ERVL -34 486 1 1138 236 82 36 chr6 146402082 146402239 -42877315 - L1M4 LINE L1 -2499 3647 3499 1149 233 49 3 chr6 146402239 146402526 -42877028 - MLT2F LTR ERVL -2 661 362 1840 260 32 17 chr6 146402631 146403400 -42876154 - L1M4 LINE L1 -2770 3376 2596 211 200 77 46 chr6 146404283 146404348 -42875206 + L2 LINE L2 3195 3261 -11 1673 219 175 6 chr6 146404393 146404878 -42874676 - MLT1F1 LTR MaLR 0 567 1 2454 121 3 0 chr6 146404931 146405296 -42874258 + THE1C LTR MaLR 8 373 -2 1628 190 14 3 chr6 146405864 146406159 -42873395 + AluJo SINE Alu 1 298 -14 423 243 9 9 chr6 146406167 146406278 -42873276 + AluJb SINE Alu 200 310 -2 25 0 0 0 chr6 146406661 146406686 -42872868 + AT_rich Low_complexity Low_complexity 1 25 0 459 266 95 23 chr6 146407277 146407540 -42872014 + L1ME4a LINE L1 5615 5896 -225 217 254 18 0 chr6 146407544 146407599 -42871955 + (CATA)n Simple_repeat Simple_repeat 4 59 0 2310 242 126 50 chr6 146407649 146408802 -42870752 + L1M3e LINE L1 464 1703 -5786 2444 249 66 24 chr6 146408805 146410616 -42868938 + L1M3e LINE L1 2012 3820 -3745 22409 46 6 0 chr6 146410740 146414081 -42865473 - L1P2 LINE L1 -362 5793 2434 197 83 28 0 chr6 146414260 146414296 -42865258 + (CATTC)n Simple_repeat Simple_repeat 4 40 0 189 159 0 0 chr6 146414380 146414424 -42865130 + (CATTC)n Satellite Satellite 2 45 0 831 140 0 0 chr6 146414445 146414616 -42864938 + (CATTC)n Satellite Satellite 2 172 0 180 158 0 0 chr6 146414640 146414678 -42864876 + (CATTC)n Satellite Satellite 3 40 0 887 130 0 22 chr6 146414693 146414877 -42864677 + (CATTC)n Satellite Satellite 1 180 0 870 131 0 0 chr6 146414898 146415066 -42864488 + (CATTC)n Satellite Satellite 2 169 0 251 204 0 0 chr6 146415083 146415137 -42864417 + (CATTC)n Satellite Satellite 2 55 0 818 143 6 0 chr6 146415158 146415333 -42864221 + (CATTC)n Satellite Satellite 2 177 0 1036 106 6 6 chr6 146415360 146415540 -42864014 + (CATTC)n Satellite Satellite 1 180 0 1191 98 4 0 chr6 146415576 146416078 -42863476 + (CATTC)n Satellite Satellite 1 504 0 1150 124 3 10 chr6 146416098 146416769 -42862785 + (CATTC)n Satellite Satellite 1 666 0 893 124 0 27 chr6 146416810 146416995 -42862559 + (CATTC)n Satellite Satellite 1 180 0 1085 130 3 0 chr6 146417039 146417348 -42862206 + (CATTC)n Satellite Satellite 1 310 0 1100 146 0 2 chr6 146417359 146417794 -42861760 + (CATTC)n Satellite Satellite 1 433 0 1050 118 0 0 chr6 146417805 146418153 -42861401 + (CATTC)n Satellite Satellite 1 348 0 237 128 0 0 chr6 146418172 146418219 -42861335 + (CATTC)n Satellite Satellite 4 50 0 908 125 0 27 chr6 146418230 146418414 -42861140 + (CATTC)n Satellite Satellite 2 180 0 1000 99 8 4 chr6 146418449 146418700 -42860854 + (CATTC)n Satellite Satellite 1 252 0 812 133 0 28 chr6 146418722 146418903 -42860651 + (CATTC)n Satellite Satellite 1 176 0 1317 117 2 6 chr6 146418929 146419623 -42859931 + (CATTC)n Satellite Satellite 1 691 0 696 186 0 0 chr6 146419638 146419815 -42859739 + (CATTC)n Satellite Satellite 2 178 0 204 111 0 0 chr6 146419841 146419877 -42859677 + (CATTC)n Satellite Satellite 1 36 0 903 112 0 0 chr6 146419889 146420041 -42859513 + (CATTC)n Satellite Satellite 4 155 0 291 203 0 0 chr6 146420052 146420131 -42859423 + (CATTC)n Satellite Satellite 2 80 0 1104 119 3 0 chr6 146420142 146420487 -42859067 + (CATTC)n Satellite Satellite 1 346 0 1152 133 1 1 chr6 146420508 146421715 -42857839 + (CATTC)n Satellite Satellite 1 1207 0 981 121 6 6 chr6 146421740 146422105 -42857449 + (CATTC)n Satellite Satellite 1 365 0 1029 158 0 3 chr6 146422129 146422482 -42857072 + (CATTC)n Satellite Satellite 3 353 0 1179 94 0 0 chr6 146422497 146422677 -42856877 + (CATTC)n Satellite Satellite 1 180 0 1026 122 0 0 chr6 146422712 146422892 -42856662 + (CATTC)n Satellite Satellite 1 180 0 737 145 0 21 chr6 146422913 146423154 -42856400 + (CATTC)n Satellite Satellite 1 235 0 609 118 0 0 chr6 146423178 146423288 -42856266 + (CATTC)n Satellite Satellite 3 112 0 1062 122 0 0 chr6 146423311 146423491 -42856063 + (CATTC)n Satellite Satellite 1 180 0 851 135 0 27 chr6 146423521 146423706 -42855848 + (CATTC)n Satellite Satellite 1 180 0 975 149 0 10 chr6 146423731 146424236 -42855318 + (CATTC)n Satellite Satellite 1 500 0 1254 121 0 11 chr6 146424247 146424796 -42854758 + (CATTC)n Satellite Satellite 1 543 0 896 111 0 28 chr6 146424822 146425003 -42854551 + (CATTC)n Satellite Satellite 2 177 0 945 126 0 0 chr6 146425027 146425202 -42854352 + (CATTC)n Satellite Satellite 3 177 0 1158 100 0 0 chr6 146425215 146425395 -42854159 + (CATTC)n Satellite Satellite 1 180 0 1059 140 6 8 chr6 146425419 146426292 -42853262 + (CATTC)n Satellite Satellite 1 870 0 1020 135 0 0 chr6 146426317 146426761 -42852793 + (CATTC)n Satellite Satellite 1 444 0 1158 87 0 0 chr6 146426777 146426950 -42852604 + (CATTC)n Satellite Satellite 2 174 0 1289 102 2 2 chr6 146426963 146427445 -42852109 + (CATTC)n Satellite Satellite 1 482 0 898 95 0 53 chr6 146427465 146427655 -42851899 + (CATTC)n Satellite Satellite 1 180 0 1053 143 6 14 chr6 146427681 146428028 -42851526 + (CATTC)n Satellite Satellite 3 345 0 1037 101 6 0 chr6 146428043 146428222 -42851332 + (CATTC)n Satellite Satellite 1 180 0 1254 120 0 0 chr6 146428233 146428807 -42850747 + (CATTC)n Satellite Satellite 1 574 0 1278 80 0 41 chr6 146428843 146429218 -42850336 + (CATTC)n Satellite Satellite 1 360 0 969 126 0 0 chr6 146429244 146429419 -42850135 + (CATTC)n Satellite Satellite 3 177 0 852 132 0 0 chr6 146429438 146429590 -42849964 + (CATTC)n Satellite Satellite 2 153 0 258 32 0 0 chr6 146429607 146429638 -42849916 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 723 167 0 0 chr6 146429740 146429902 -42849652 + (CATTC)n Satellite Satellite 1 162 0 1272 93 2 5 chr6 146429921 146430988 -42848566 + (CATTC)n Satellite Satellite 1 1063 0 906 126 0 0 chr6 146431009 146431233 -42848321 + (CATTC)n Satellite Satellite 1 224 0 1035 136 2 2 chr6 146431245 146431793 -42847761 + (CATTC)n Satellite Satellite 1 548 0 1167 159 0 4 chr6 146431814 146432317 -42847237 + (CATTC)n Satellite Satellite 1 501 0 1137 107 0 19 chr6 146432338 146432702 -42846852 + (CATTC)n Satellite Satellite 2 358 0 1074 107 0 0 chr6 146432723 146432900 -42846654 + (CATTC)n Satellite Satellite 2 178 0 951 137 0 9 chr6 146432928 146433269 -42846285 + (CATTC)n Satellite Satellite 2 339 0 743 164 6 0 chr6 146433287 146433458 -42846096 + (CATTC)n Satellite Satellite 2 173 0 210 37 0 0 chr6 146433471 146433498 -42846056 + (CATTC)n Satellite Satellite 2 28 0 4740 175 41 15 chr6 146433605 146434895 -42844659 - L1M2 LINE L1 -668 5623 4297 827 253 64 11 chr6 146434897 146435162 -42844392 - L2 LINE L2 -897 2417 2139 249 279 58 29 chr6 146435405 146435509 -42844045 + MLT1L LTR MaLR 142 248 -367 2114 131 35 30 chr6 146435566 146435939 -42843615 + THE1C LTR MaLR 1 375 0 504 229 97 7 chr6 146436063 146436207 -42843347 + MLT1L LTR MaLR 445 601 -14 290 268 21 21 chr6 146436514 146436531 -42843023 + GA-rich Low_complexity Low_complexity 4 20 -80 1784 152 0 11 chr6 146436531 146436808 -42842746 + AluJb SINE Alu 1 274 -38 290 268 21 21 chr6 146436808 146436887 -42842667 + GA-rich Low_complexity Low_complexity 19 100 0 236 259 17 0 chr6 146437105 146437163 -42842391 - MIR SINE MIR -64 144 86 197 426 47 8 chr6 146437699 146437828 -42841726 - L2 LINE L2 -1 3271 3138 333 0 0 0 chr6 146437831 146437868 -42841686 + (TA)n Simple_repeat Simple_repeat 2 38 0 3367 71 0 7 chr6 146438236 146438687 -42840867 - LTR7 LTR ERV1 -2 448 1 2335 82 45 13 chr6 146438687 146439065 -42840489 - HERVH LTR ERV1 0 7713 7324 1240 132 33 0 chr6 146439065 146439278 -42840276 - HERVH LTR ERV1 -1894 5819 5600 4083 142 1 3 chr6 146439279 146439942 -42839612 - HERVH LTR ERV1 -2564 5149 4488 3254 109 0 6 chr6 146439944 146440449 -42839105 - HERVH LTR ERV1 -3720 3993 3492 897 133 7 0 chr6 146440439 146440589 -42838965 - HERVH LTR ERV1 -4423 3290 3140 * 14666 89 34 20 chr6 146440583 146442928 -42836626 - HERVH LTR ERV1 -4726 2987 609 589 77 0 0 chr6 146442930 146443021 -42836533 - HERVH LTR ERV1 -6981 732 642 466 100 0 0 chr6 146443026 146443096 -42836458 - LTR7 LTR ERV1 -380 70 1 4183 68 15 0 chr6 146443180 146443726 -42835828 + MER41A LTR ERV1 1 554 0 614 268 60 27 chr6 146443734 146443917 -42835637 - MIR SINE MIR -16 246 58 761 179 107 6 chr6 146444840 146445008 -42834546 - MER20 DNA MER1_type 0 219 35 3048 150 170 36 chr6 146445008 146445736 -42833818 + LTR1B LTR ERV1 1 826 0 202 333 0 0 chr6 146445889 146445943 -42833611 + MIR SINE MIR 49 102 -160 244 286 50 75 chr6 146446016 146446177 -42833377 - L2 LINE L2 -41 3272 3116 379 346 92 32 chr6 146446253 146446470 -42833084 - MIR SINE MIR -20 242 13 2570 150 95 10 chr6 146446515 146447082 -42832472 + MER4B LTR ERV1 1 779 0 422 313 110 19 chr6 146447360 146447779 -42831775 - L1ME3 LINE L1 -225 5937 5481 242 275 67 20 chr6 146447764 146447913 -42831641 - L1ME3 LINE L1 -891 5255 5100 * 3967 141 12 5 chr6 146448068 146448740 -42830814 - L1PB4 LINE L1 -1 6858 6182 6588 80 2 7 chr6 146448776 146450075 -42829479 - L1PA14 LINE L1 -9 6152 4854 3997 157 11 34 chr6 146450075 146450881 -42828673 - L1PB4 LINE L1 -667 6192 5419 2339 99 3 0 chr6 146450881 146451185 -42828369 - AluSg SINE Alu -1 309 5 3997 157 11 34 chr6 146451185 146451417 -42828137 - L1PB4 LINE L1 -1440 5419 5183 3988 242 32 59 chr6 146451392 146455132 -42824422 - L1PB4 LINE L1 -3220 3629 131 * 759 240 58 19 chr6 146455166 146455491 -42824063 - L1M4 LINE L1 -896 5250 4913 340 292 134 13 chr6 146455665 146456052 -42823502 - L1M4 LINE L1 -1447 4699 4266 870 219 149 93 chr6 146456139 146456218 -42823336 - MSTD LTR MaLR 0 396 323 4276 148 14 9 chr6 146456218 146456989 -42822565 - L1MA4 LINE L1 0 6300 5526 870 219 149 93 chr6 146456989 146457284 -42822270 - MSTD LTR MaLR -73 323 1 319 354 24 16 chr6 146457311 146457438 -42822116 - L1M4 LINE L1 -2004 4142 4015 2082 133 0 7 chr6 146457457 146457751 -42821803 + AluSx SINE Alu 5 296 -16 359 289 78 36 chr6 146457759 146457925 -42821629 - L1M4 LINE L1 -2135 4011 3839 182 224 90 0 chr6 146457945 146458012 -42821542 + MIR SINE MIR 120 192 -70 765 289 103 34 chr6 146458070 146458488 -42821066 + LTR33 LTR ERVL 23 469 -52 4614 100 44 1 chr6 146458548 146459208 -42820346 - LTR12 LTR ERV1 0 688 1 35368 81 19 10 chr6 146460415 146466156 -42813398 - L1PA6 LINE L1 -332 5822 33 2562 56 0 0 chr6 146466156 146466475 -42813079 + L1PA6 LINE L1 5831 6149 -5 182 254 90 45 chr6 146466868 146466935 -42812619 - L2 LINE L2 -4 3309 3240 246 217 29 14 chr6 146467107 146467176 -42812378 + GA-rich Low_complexity Low_complexity 4 73 0 195 42 0 0 chr6 146467964 146467988 -42811566 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 375 41 0 0 chr6 146467987 146468036 -42811518 + (TG)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr6 146468394 146468415 -42811139 + AT_rich Low_complexity Low_complexity 1 21 0 2117 169 106 9 chr6 146468936 146469362 -42810192 + MLT1C LTR MaLR 1 467 0 2794 10 0 0 chr6 146469536 146469842 -42809712 - AluYa5 SINE Alu -5 306 1 2048 139 3 7 chr6 146469904 146470213 -42809341 - AluSx SINE Alu -4 308 1 21 0 0 0 chr6 146470234 146470255 -42809299 + AT_rich Low_complexity Low_complexity 1 21 0 368 353 78 19 chr6 146470287 146470556 -42808998 - L1MC4 LINE L1 -152 7890 7606 227 260 180 0 chr6 146470617 146470717 -42808837 - L1MC5 LINE L1 -536 7425 7308 332 315 136 26 chr6 146470723 146471132 -42808422 - L1MC4 LINE L1 -584 7458 6999 346 254 27 36 chr6 146471263 146471373 -42808181 - L1MC4 LINE L1 -1046 6996 6888 761 225 28 87 chr6 146471406 146471859 -42807695 + MLT1A1 LTR MaLR 1 365 0 254 250 60 0 chr6 146471887 146471987 -42807567 - L1MC4a LINE L1 -1137 6671 6566 30038 106 12 61 chr6 146472172 146475841 -42803713 + L1PA7 LINE L1 13 3221 -2933 2945 6 0 0 chr6 146475841 146476159 -42803395 - AluYb8 SINE Alu 0 318 1 30038 106 12 61 chr6 146476159 146478951 -42800603 + L1PA7 LINE L1 3221 6148 -6 319 296 27 16 chr6 146478941 146479127 -42800427 + HAL1 LINE L1 2025 2212 -295 * 1540 176 112 29 chr6 146479127 146479474 -42800080 + LTR32 LTR ERVL 14 389 -82 277 241 115 55 chr6 146479708 146479961 -42799593 - L1MC4a LINE L1 -1751 6057 5790 495 291 11 6 chr6 146480347 146480529 -42799025 + LTR67 LTR ERVL 368 550 -7 1920 163 0 3 chr6 146480959 146481266 -42798288 - AluJb SINE Alu 0 306 1 266 289 26 13 chr6 146483541 146483617 -42795937 - MER5A DNA MER1_type 0 189 113 504 254 48 38 chr6 146484119 146484328 -42795226 + L1ME4a LINE L1 5673 5883 -238 204 163 0 0 chr6 146484423 146484466 -42795088 + GA-rich Low_complexity Low_complexity 2 44 0 29 28 0 0 chr6 146484818 146484854 -42794700 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr6 146484944 146484981 -42794573 + AT_rich Low_complexity Low_complexity 1 37 0 1669 175 54 3 chr6 146484985 146485282 -42794272 + AluJb SINE Alu 1 312 0 417 161 46 35 chr6 146485977 146486064 -42793490 + MER5A DNA MER1_type 102 189 0 350 261 7 124 chr6 146486064 146486215 -42793339 - MER5B DNA MER1_type -43 146 1 311 167 58 25 chr6 146486841 146486961 -42792593 + (TA)n Simple_repeat Simple_repeat 2 125 0 6573 78 21 21 chr6 146486989 146488086 -42791468 - L1PA8 LINE L1 -2 6170 5069 472 281 96 11 chr6 146488791 146488969 -42790585 + L1ME4a LINE L1 5705 5897 -224 21 0 0 0 chr6 146489097 146489118 -42790436 + AT_rich Low_complexity Low_complexity 1 21 0 1754 127 89 0 chr6 146489141 146489424 -42790130 - AluSg SINE Alu 0 306 1 1593 114 27 0 chr6 146490511 146490773 -42788781 + L1MA5A LINE L1 6023 6291 -6 1937 156 17 10 chr6 146491367 146491692 -42787862 - AluSx SINE Alu 0 312 1 873 116 0 8 chr6 146491695 146491816 -42787738 - AluJb SINE Alu -179 133 14 189 286 48 16 chr6 146492114 146492177 -42787377 + MIR SINE MIR 89 153 -109 1736 157 3 26 chr6 146492192 146492498 -42787056 + AluSx SINE Alu 1 299 -13 2540 188 18 14 chr6 146492670 146493170 -42786384 + MLT2B1 LTR ERVL 1 502 -18 2602 41 0 19 chr6 146493460 146493776 -42785778 - AluY SINE Alu -1 310 1 2347 116 0 0 chr6 146493790 146494101 -42785453 - AluSx SINE Alu -1 311 1 1911 166 0 3 chr6 146494778 146495068 -42784486 - AluJo SINE Alu -23 289 1 29 0 0 0 chr6 146495374 146495403 -42784151 + AT_rich Low_complexity Low_complexity 1 29 0 1952 136 27 3 chr6 146496916 146497210 -42782344 + AluJo SINE Alu 1 301 -11 613 222 79 0 chr6 146497342 146497531 -42782023 - L1MC4 LINE L1 -921 7121 6918 517 183 0 0 chr6 146497563 146497645 -42781909 + AluJb SINE Alu 143 224 -88 1404 127 10 5 chr6 146497664 146497869 -42781685 - AluJb SINE Alu -98 214 9 6179 155 57 30 chr6 146497879 146498120 -42781434 - L1MA2 LINE L1 0 6304 6071 204 67 0 0 chr6 146498120 146498150 -42781404 + (CA)n Simple_repeat Simple_repeat 2 31 0 6179 155 57 30 chr6 146498150 146499693 -42779861 - L1MA2 LINE L1 -233 6071 4989 445 128 18 101 chr6 146499826 146499885 -42779669 + L1MA10 LINE L1 6221 6269 -65 2212 98 0 7 chr6 146499885 146500180 -42779374 + AluSg SINE Alu 1 293 -17 445 128 18 101 chr6 146500180 146500229 -42779325 + L1MA10 LINE L1 6269 6320 -14 1757 212 69 9 chr6 146500318 146500781 -42778773 + L1MC4a LINE L1 7068 7558 -250 207 0 0 0 chr6 146501416 146501439 -42778115 + (CAA)n Simple_repeat Simple_repeat 1 23 0 378 314 27 27 chr6 146501458 146501643 -42777911 + L1MCa LINE L1 1334 1518 -4908 243 319 43 52 chr6 146502171 146502287 -42777267 + MIR SINE MIR 25 139 -69 2308 91 0 28 chr6 146503333 146503652 -42775902 - AluSg SINE Alu 0 310 1 1665 176 43 86 chr6 146503711 146504199 -42775355 + MLT1C LTR MaLR 1 467 0 799 297 147 24 chr6 146504472 146504852 -42774702 + L3 LINE CR1 270 696 -881 355 324 32 38 chr6 146504881 146505066 -42774488 + L3 LINE CR1 1063 1246 -331 427 322 119 27 chr6 146505204 146505465 -42774089 + L1M4 LINE L1 4549 4833 -1313 566 173 109 0 chr6 146505950 146506060 -42773494 - L2 LINE L2 0 3313 3192 303 328 157 0 chr6 146506268 146506466 -42773088 + MIR SINE MIR 34 262 0 25 0 0 0 chr6 146508386 146508411 -42771143 + AT_rich Low_complexity Low_complexity 1 25 0 384 297 103 7 chr6 146508710 146508855 -42770699 - MIR SINE MIR -86 176 18 182 361 62 28 chr6 146509902 146510046 -42769508 + L2 LINE L2 2906 3054 -218 356 284 178 15 chr6 146510282 146510479 -42769075 + MIR SINE MIR 29 257 -5 1725 195 60 85 chr6 146511165 146511529 -42768025 + L1ME1 LINE L1 5491 5838 -328 2079 121 3 10 chr6 146511529 146511836 -42767718 + AluSx SINE Alu 1 305 -7 1725 195 60 85 chr6 146511836 146512026 -42767528 + L1ME1 LINE L1 5838 6031 -135 236 254 27 64 chr6 146512408 146512518 -42767036 - MIR SINE MIR 0 262 157 198 91 0 0 chr6 146512679 146512712 -42766842 + (CAGAGA)n Simple_repeat Simple_repeat 1 33 0 181 389 26 26 chr6 146512783 146512896 -42766658 - L2 LINE L2 -8 3264 3152 240 35 0 0 chr6 146513739 146513768 -42765786 + (TG)n Simple_repeat Simple_repeat 1 29 0 183 42 0 0 chr6 146513767 146513791 -42765763 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 257 333 69 39 chr6 146513861 146514092 -42765462 - L1ME LINE L1 -294 5827 5590 407 45 197 0 chr6 146514388 146514454 -42765100 - MADE1 DNA Mariner -1 79 1 262 323 81 16 chr6 146515544 146515668 -42763886 - MIR3 SINE MIR -68 140 9 186 103 0 0 chr6 146516724 146516753 -42762801 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr6 146516872 146516900 -42762654 + AT_rich Low_complexity Low_complexity 1 28 0 306 0 0 0 chr6 146518273 146518307 -42761247 + (CA)n Simple_repeat Simple_repeat 2 35 0 312 188 87 0 chr6 146518407 146518476 -42761078 + MIR SINE MIR 81 155 -107 1672 148 75 0 chr6 146518610 146518726 -42760828 + AluJb SINE Alu 1 107 -205 306 0 0 0 chr6 146518726 146518760 -42760794 + (CA)n Simple_repeat Simple_repeat 2 35 0 1672 148 75 0 chr6 146518760 146518921 -42760633 + AluJb SINE Alu 107 299 -13 679 199 149 0 chr6 146519435 146519596 -42759958 - MER3 DNA MER1_type -22 187 3 2368 65 3 20 chr6 146520023 146520329 -42759225 + AluY SINE Alu 1 301 -10 30 27 0 0 chr6 146520774 146520811 -42758743 + AT_rich Low_complexity Low_complexity 1 37 0 219 233 17 17 chr6 146521970 146522030 -42757524 + (TA)n Simple_repeat Simple_repeat 1 60 0 548 296 102 44 chr6 146522638 146522999 -42756555 - L3 LINE CR1 -89 1488 1107 261 302 12 0 chr6 146523062 146523148 -42756406 - L3 LINE CR1 -608 969 883 223 286 12 12 chr6 146523928 146524012 -42755542 + L2 LINE L2 2183 2266 -1048 226 263 79 0 chr6 146524089 146524165 -42755389 + MER112 DNA MER1_type 173 254 -6 21 0 0 0 chr6 146524438 146524459 -42755095 + AT_rich Low_complexity Low_complexity 1 21 0 2111 107 34 0 chr6 146524535 146524826 -42754728 - AluSg SINE Alu -9 301 1 2220 109 3 0 chr6 146524894 146525187 -42754367 - AluSc SINE Alu -15 294 1 26 50 0 0 chr6 146525719 146525759 -42753795 + AT_rich Low_complexity Low_complexity 1 40 0 188 312 40 56 chr6 146525763 146525888 -42753666 - L2 LINE L2 -182 3090 2968 23 78 0 0 chr6 146527604 146527655 -42751899 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr6 146527757 146527780 -42751774 + AT_rich Low_complexity Low_complexity 1 23 0 348 264 208 13 chr6 146528475 146528706 -42750848 + L1MC4a LINE L1 5622 5897 -1911 315 0 0 0 chr6 146528715 146528750 -42750804 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr6 146529743 146529767 -42749787 + AT_rich Low_complexity Low_complexity 1 24 0 2450 80 0 0 chr6 146531104 146531415 -42748139 + AluY SINE Alu 1 311 0 261 315 130 0 chr6 146531610 146531702 -42747852 + L2 LINE L2 3210 3313 0 1943 121 22 35 chr6 146531713 146532027 -42747527 + AluJb SINE Alu 1 310 -2 469 315 42 24 chr6 146532700 146532865 -42746689 + MIR3 SINE MIR 10 177 -31 851 185 56 11 chr6 146533029 146533207 -42746347 + MER5A DNA MER1_type 1 186 -3 846 189 6 12 chr6 146533653 146533817 -42745737 - FRAM SINE Alu -13 163 1 25 0 0 0 chr6 146533820 146533845 -42745709 + AT_rich Low_complexity Low_complexity 1 25 0 5095 190 112 20 chr6 146534565 146535889 -42743665 + Charlie1a DNA MER1_type 1 1446 -9 22 56 0 0 chr6 146536557 146536593 -42742961 + AT_rich Low_complexity Low_complexity 1 36 0 234 236 55 0 chr6 146537777 146537832 -42741722 + L2 LINE L2 3165 3222 -50 500 232 167 30 chr6 146537836 146538034 -42741520 + L2 LINE L2 3045 3269 -44 22 56 0 0 chr6 146538987 146539023 -42740531 + AT_rich Low_complexity Low_complexity 1 36 0 245 242 0 16 chr6 146539976 146540038 -42739516 - 7SK RNA RNA -121 72 12 21 0 0 0 chr6 146540154 146540175 -42739379 + AT_rich Low_complexity Low_complexity 1 21 0 36 23 0 0 chr6 146540811 146540854 -42738700 + AT_rich Low_complexity Low_complexity 1 43 0 265 192 50 61 chr6 146540981 146541080 -42738474 + L1MC5 LINE L1 7721 7818 -143 1707 111 0 0 chr6 146541225 146541450 -42738104 + AluSq SINE Alu 54 278 -35 234 0 0 0 chr6 146541452 146541478 -42738076 + (CAA)n Simple_repeat Simple_repeat 2 27 0 188 35 35 0 chr6 146542041 146542070 -42737484 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 25 0 0 0 chr6 146542168 146542193 -42737361 + AT_rich Low_complexity Low_complexity 1 25 0 864 110 0 0 chr6 146542497 146542615 -42736939 - FLAM_C SINE Alu -25 118 1 260 389 60 0 chr6 146543259 146543408 -42736146 + L2 LINE L2 2910 3067 -205 618 89 0 0 chr6 146543416 146543506 -42736048 - AluSg/x SINE Alu -6 303 214 226 149 21 0 chr6 146543567 146543614 -42735940 + L1MC4 LINE L1 6656 6703 -1339 348 83 0 0 chr6 146543624 146543672 -42735882 + (TA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr6 146546891 146546913 -42732641 + AT_rich Low_complexity Low_complexity 1 22 0 300 169 0 0 chr6 146548976 146549053 -42730501 + A-rich Low_complexity Low_complexity 1 77 0 288 0 0 0 chr6 146549413 146549445 -42730109 + (A)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr6 146549609 146549637 -42729917 + AT_rich Low_complexity Low_complexity 1 28 0 351 277 145 24 chr6 146550043 146550209 -42729345 - MIR3 SINE MIR -7 201 16 1845 175 0 7 chr6 146550446 146550755 -42728799 + AluJb SINE Alu 1 307 -5 66 0 0 0 chr6 146550973 146551039 -42728515 + AT_rich Low_complexity Low_complexity 1 66 0 251 333 43 32 chr6 146551950 146552043 -42727511 + MIR SINE MIR 6 99 -163 821 175 209 6 chr6 146552669 146552846 -42726708 + MER58A DNA MER1_type 1 213 -11 437 303 91 29 chr6 146552889 146553097 -42726457 + L2 LINE L2 2242 2462 -852 267 337 47 0 chr6 146553104 146553190 -42726364 + L2 LINE L2 3223 3312 -1 1362 189 44 51 chr6 146554202 146554498 -42725056 - AluJo SINE Alu -18 294 1 1713 179 3 3 chr6 146554714 146555011 -42724543 - AluJb SINE Alu -15 297 1 1014 124 45 0 chr6 146555083 146555260 -42724294 + L1MA8 LINE L1 6003 6187 -104 235 189 0 0 chr6 146556293 146556330 -42723224 - Alu SINE Alu -265 37 1 2014 131 77 11 chr6 146557438 146557788 -42721766 + THE1C LTR MaLR 3 375 0 995 247 211 60 chr6 146558003 146558518 -42721036 + MLT1G1 LTR MaLR 1 543 -12 21 57 0 0 chr6 146559025 146559060 -42720494 + AT_rich Low_complexity Low_complexity 1 35 0 1238 243 98 56 chr6 146559607 146559750 -42719804 + L1MC4a LINE L1 5370 5505 -2303 2489 77 0 0 chr6 146559750 146560061 -42719493 + AluY SINE Alu 1 311 0 1238 243 98 56 chr6 146560061 146560436 -42719118 + L1MC4a LINE L1 5505 5910 -1898 183 80 0 0 chr6 146561234 146561259 -42718295 + (A)n Simple_repeat Simple_repeat 1 25 0 461 237 0 8 chr6 146562551 146562669 -42716885 - L1M4 LINE L1 -2294 3852 3736 1547 134 36 2 chr6 146563049 146563313 -42716241 - MLT1B LTR MaLR -1 389 127 835 252 31 20 chr6 146563573 146563827 -42715727 - HAL1 LINE L1 -1678 829 573 216 392 67 8 chr6 146564086 146564206 -42715348 + L2 LINE L2 3134 3260 -12 378 325 16 8 chr6 146564426 146564552 -42715002 - L2 LINE L2 -4 3309 3183 543 224 55 6 chr6 146564992 146565157 -42714397 - Cheshire DNA MER1_type -264 2156 1984 1799 153 12 55 chr6 146566097 146566423 -42713131 - AluJo SINE Alu 0 312 1 210 309 103 24 chr6 146566643 146566769 -42712785 - MIR3 SINE MIR -38 170 35 1735 129 85 52 chr6 146566970 146567333 -42712221 + THE1C LTR MaLR 1 375 0 257 108 0 0 chr6 146567434 146567471 -42712083 + tRNA-Arg-AGA tRNA tRNA 1 37 -39 1297 191 62 13 chr6 146567601 146567910 -42711644 - MLT2C1 LTR ERVL -73 324 1 1807 154 14 0 chr6 146568346 146568665 -42710889 - AluSq SINE Alu 0 323 1 956 91 7 63 chr6 146568665 146568808 -42710746 - AluSq/x SINE Alu -178 135 1 243 300 88 0 chr6 146568808 146568888 -42710666 - MER5B DNA MER1_type -39 139 53 442 136 0 12 chr6 146569257 146569338 -42710216 - AluJo SINE Alu -1 311 232 1263 91 46 10 chr6 146569338 146569535 -42710019 + PABL_B LTR ERV1 2 205 -462 2186 132 19 8 chr6 146569542 146569905 -42709649 + PABL_A-int LTR ERV1 58 424 -4591 1076 154 6 16 chr6 146569905 146570087 -42709467 - AluJo SINE Alu -77 235 56 243 262 49 138 chr6 146570568 146570758 -42708796 + MIR SINE MIR 26 206 -56 197 132 0 57 chr6 146571862 146571915 -42707639 + (T)n Simple_repeat Simple_repeat 1 50 0 1439 134 79 76 chr6 146572343 146572634 -42706920 - AluJb SINE Alu -20 292 1 25 0 0 0 chr6 146572712 146572737 -42706817 + AT_rich Low_complexity Low_complexity 1 25 0 672 148 17 9 chr6 146572750 146572865 -42706689 - FLAM_A SINE Alu -21 121 6 180 0 0 0 chr6 146573156 146573176 -42706378 + (TA)n Simple_repeat Simple_repeat 2 21 0 824 178 0 37 chr6 146573176 146573339 -42706215 - FRAM SINE Alu 0 40 1 670 176 0 8 chr6 146573754 146573893 -42705661 + FLAM_C SINE Alu 1 138 0 23 0 0 0 chr6 146575317 146575340 -42704214 + AT_rich Low_complexity Low_complexity 1 23 0 1733 139 51 14 chr6 146575709 146576004 -42703550 - AluJb SINE Alu -6 306 1 1582 207 7 3 chr6 146576481 146576780 -42702774 - AluJb SINE Alu -11 301 2 396 155 14 0 chr6 146576805 146576876 -42702678 - U4 snRNA snRNA -73 72 1 2896 271 119 13 chr6 146577626 146577833 -42701721 - L2 LINE L2 -13 3300 3116 399 21 0 0 chr6 146577833 146577881 -42701673 + (TG)n Simple_repeat Simple_repeat 1 48 0 2896 271 119 13 chr6 146577881 146578842 -42700712 - L2 LINE L2 -197 3116 1983 878 279 119 22 chr6 146579394 146579896 -42699658 - HAL1 LINE L1 -710 1797 1247 326 228 22 88 chr6 146579906 146580042 -42699512 - MLT1D LTR MaLR -398 107 1 237 234 97 90 chr6 146580044 146580184 -42699370 - HAL1 LINE L1 -1400 1107 969 315 0 0 0 chr6 146580184 146580219 -42699335 + (TG)n Simple_repeat Simple_repeat 2 36 0 237 234 97 90 chr6 146580219 146580368 -42699186 - HAL1 LINE L1 -1538 969 816 21 0 0 0 chr6 146580654 146580675 -42698879 + AT_rich Low_complexity Low_complexity 1 21 0 1220 143 0 0 chr6 146580901 146581083 -42698471 - AluJb SINE Alu -130 182 1 186 326 87 11 chr6 146581151 146581243 -42698311 - L2 LINE L2 -247 3066 2968 2115 117 3 17 chr6 146581430 146581730 -42697824 + AluSx SINE Alu 1 296 -16 1726 183 7 3 chr6 146581826 146582116 -42697438 - AluSx SINE Alu -21 291 1 23 0 0 0 chr6 146582771 146582794 -42696760 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr6 146583489 146583515 -42696039 + AT_rich Low_complexity Low_complexity 1 26 0 4661 117 18 8 chr6 146583554 146584283 -42695271 - L1PA16 LINE L1 -10 6156 5421 2041 171 32 0 chr6 146584283 146584834 -42694720 + L1PA16 LINE L1 4869 5444 -722 22 35 0 0 chr6 146584835 146584864 -42694690 + AT_rich Low_complexity Low_complexity 1 29 0 14411 130 28 14 chr6 146584953 146585802 -42693752 + Tigger1 DNA MER2_type 1 836 -1582 2012 130 3 46 chr6 146585802 146586125 -42693429 + AluSx SINE Alu 1 309 -3 14411 130 28 14 chr6 146586125 146587659 -42691895 + Tigger1 DNA MER2_type 836 2418 0 2421 106 0 0 chr6 146588339 146588651 -42690903 + AluSx SINE Alu 1 312 0 419 82 38 65 chr6 146589694 146590143 -42689411 + (TA)n Simple_repeat Simple_repeat 1 436 0 642 125 19 10 chr6 146590215 146590319 -42689235 - AluSg/x SINE Alu -16 293 189 399 207 166 53 chr6 146591275 146591444 -42688110 - L2 LINE L2 0 3313 3126 1575 123 32 56 chr6 146591619 146591904 -42687650 + AluSx SINE Alu 35 312 0 236 304 78 20 chr6 146592462 146592564 -42686990 + MIR3 SINE MIR 51 158 -50 2349 91 0 7 chr6 146592666 146592963 -42686591 + AluSg SINE Alu 1 295 -15 369 281 122 22 chr6 146593544 146593683 -42685871 + MER91A DNA MER1_type 1 153 -43 2432 64 10 0 chr6 146593802 146594098 -42685456 - AluY SINE Alu -12 299 1 3100 133 82 8 chr6 146594396 146594886 -42684668 - MER1A DNA MER1_type 0 527 2 246 105 0 0 chr6 146595123 146595161 -42684393 + (TG)n Simple_repeat Simple_repeat 2 39 0 2174 111 6 49 chr6 146595972 146596297 -42683257 + AluSx SINE Alu 1 311 -1 346 279 51 44 chr6 146597005 146597163 -42682391 + MER103 DNA DNA 8 166 0 223 333 41 41 chr6 146597288 146597411 -42682143 + MER5A DNA MER1_type 53 175 -14 2328 96 0 3 chr6 146598631 146598944 -42680610 + AluSx SINE Alu 1 312 0 280 209 0 82 chr6 146599126 146599236 -42680318 + LTR67 LTR ERVL 457 557 0 21 36 0 0 chr6 146599945 146599973 -42679581 + AT_rich Low_complexity Low_complexity 1 28 0 676 177 16 16 chr6 146600155 146600279 -42679275 + FLAM_C SINE Alu 1 124 -9 25 65 0 0 chr6 146600279 146600325 -42679229 + AT_rich Low_complexity Low_complexity 1 46 0 2398 186 54 4 chr6 146601988 146602484 -42677070 - Tigger1 DNA MER2_type -1897 521 1 821 281 19 13 chr6 146602484 146602797 -42676757 - L1ME LINE L1 -1807 4273 3959 1006 155 94 65 chr6 146602800 146603054 -42676500 + Tigger3(Golem) DNA MER2_type 2 247 -2781 1759 187 0 3 chr6 146603054 146603360 -42676194 - AluSx SINE Alu 0 305 1 1006 155 94 65 chr6 146603360 146603515 -42676039 + Tigger3(Golem) DNA MER2_type 247 2248 -780 381 247 0 0 chr6 146603517 146603594 -42675960 + Tigger3(Golem) DNA MER2_type 2953 3029 0 2260 277 60 30 chr6 146603594 146605003 -42674551 - L1ME LINE L1 -2111 3969 2519 339 295 19 0 chr6 146605019 146605124 -42674430 - U6 snRNA snRNA 0 107 1 480 182 30 0 chr6 146605124 146605223 -42674331 - L1ME LINE L1 -3546 2534 2433 23 54 0 0 chr6 146605224 146605261 -42674293 + AT_rich Low_complexity Low_complexity 1 37 0 1209 199 93 64 chr6 146608300 146609063 -42670491 - L1ME LINE L1 -3634 2446 1662 390 289 102 20 chr6 146609132 146609354 -42670200 - L1ME LINE L1 -5285 785 568 226 261 11 76 chr6 146609951 146609965 -42669589 - L1ME LINE L1 -5954 116 103 2410 120 0 47 chr6 146609965 146610347 -42669207 + THE1B LTR MaLR 1 364 0 226 261 11 76 chr6 146610347 146610424 -42669130 - L1ME LINE L1 -5967 103 31 41 48 0 0 chr6 146610497 146610559 -42668995 + AT_rich Low_complexity Low_complexity 1 62 0 414 235 0 0 chr6 146610726 146610807 -42668747 - MER47A DNA MER2_type -1 365 285 756 214 0 35 chr6 146610832 146610977 -42668577 - FAM SINE Alu -45 140 1 1837 152 3 0 chr6 146610977 146611274 -42668280 - MER47A DNA MER2_type -68 298 1 4686 204 32 11 chr6 146612069 146612989 -42666565 + L1PA15-16 LINE L1 499 1530 -5319 344 307 0 0 chr6 146612966 146613041 -42666513 - L1PA15-16 LINE L1 -5793 1056 982 * 29 28 0 0 chr6 146613679 146613715 -42665839 + AT_rich Low_complexity Low_complexity 1 36 0 2190 95 3 10 chr6 146613717 146614012 -42665542 + AluSp SINE Alu 1 293 -20 720 183 0 0 chr6 146614015 146614130 -42665424 - AluJo/FLAM SINE Alu -186 116 2 2116 112 0 7 chr6 146614165 146614474 -42665080 + AluSx SINE Alu 1 307 0 22 70 0 0 chr6 146614673 146614716 -42664838 + AT_rich Low_complexity Low_complexity 1 43 0 414 0 0 0 chr6 146614830 146614876 -42664678 + (TG)n Simple_repeat Simple_repeat 2 47 0 23 54 0 0 chr6 146615112 146615149 -42664405 + AT_rich Low_complexity Low_complexity 1 37 0 2046 184 3 0 chr6 146615242 146615589 -42663965 + MER7A DNA MER2_type 1 346 0 27 49 0 0 chr6 146615952 146615993 -42663561 + AT_rich Low_complexity Low_complexity 1 41 0 953 79 0 0 chr6 146616224 146616350 -42663204 - L1PA12 LINE L1 0 6168 6043 1029 269 20 66 chr6 146616364 146616773 -42662781 - L2 LINE L2 -12 3301 2912 423 0 0 0 chr6 146616853 146616900 -42662654 + (CA)n Simple_repeat Simple_repeat 2 48 0 2009 143 0 10 chr6 146618063 146618363 -42661191 - AluSx SINE Alu -15 297 1 641 228 16 0 chr6 146619377 146619500 -42660054 - FLAM_A SINE Alu -8 125 1 243 271 94 0 chr6 146620901 146620986 -42658568 - MIR SINE MIR -84 178 86 628 235 176 0 chr6 146621047 146621200 -42658354 + MER5A DNA MER1_type 10 189 0 270 0 0 0 chr6 146621281 146621311 -42658243 + (TC)n Simple_repeat Simple_repeat 1 30 0 252 0 0 0 chr6 146621310 146621338 -42658216 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 811 224 78 0 chr6 146621857 146622036 -42657518 + MIR SINE MIR 44 236 -26 416 208 223 23 chr6 146622073 146622203 -42657351 + MIR SINE MIR 104 259 -3 239 296 14 0 chr6 146622220 146622291 -42657263 - L1ME LINE L1 -358 5808 5737 1765 211 17 14 chr6 146622329 146622353 -42657201 - MLT1A1 LTR MaLR 0 365 343 438 73 0 167 chr6 146622353 146622409 -42657145 - MADE1 DNA Mariner 0 80 45 1984 119 0 56 chr6 146622409 146622712 -42656842 + AluSx SINE Alu 1 286 -26 438 73 0 167 chr6 146622712 146622751 -42656803 - MADE1 DNA Mariner -35 45 1 1765 211 17 14 chr6 146622751 146623087 -42656467 - MLT1A1 LTR MaLR -22 343 4 329 243 32 122 chr6 146623264 146623453 -42656101 + MIR SINE MIR 90 261 -1 247 394 57 34 chr6 146624061 146624236 -42655318 - L2 LINE L2 -4 3268 3090 282 282 122 32 chr6 146624333 146624521 -42655033 + L1M4 LINE L1 4955 5159 -987 2254 115 3 0 chr6 146624756 146625061 -42654493 + AluSq SINE Alu 1 306 -7 239 179 0 26 chr6 146626527 146626605 -42652949 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 681 257 37 0 chr6 146627920 146628107 -42651447 - HAL1 LINE L1 -759 1748 1555 664 212 98 44 chr6 146628104 146628116 -42651438 - HAL1 LINE L1 -1274 1233 1223 * 2223 114 3 0 chr6 146628116 146628415 -42651139 + AluSx SINE Alu 1 300 -12 664 212 98 44 chr6 146628415 146628699 -42650855 - HAL1 LINE L1 -1284 1223 921 871 260 131 26 chr6 146628703 146629091 -42650463 - HAL1 LINE L1 -1640 867 439 368 245 248 36 chr6 146629102 146629380 -42650174 - HAL1 LINE L1 -2149 358 22 25 31 0 0 chr6 146629643 146629675 -42649879 + AT_rich Low_complexity Low_complexity 1 32 0 1954 129 29 0 chr6 146629907 146630187 -42649367 - AluSx SINE Alu -24 288 1 405 0 0 0 chr6 146630193 146630238 -42649316 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1967 100 30 0 chr6 146630241 146630512 -42649042 - AluSg SINE Alu -31 279 1 349 132 0 0 chr6 146631587 146631640 -42647914 + U6 snRNA snRNA 1 53 -54 180 0 0 0 chr6 146631645 146631665 -42647889 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 210 37 0 0 chr6 146631754 146631781 -42647773 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2138 100 7 17 chr6 146632100 146632401 -42647153 + AluSx SINE Alu 1 298 -14 723 195 16 0 chr6 146632548 146632676 -42646878 + FLAM_C SINE Alu 1 130 -3 728 174 8 15 chr6 146632960 146633092 -42646462 + FLAM_A SINE Alu 2 132 -1 508 191 48 0 chr6 146633141 146633246 -42646308 - L1MB1 LINE L1 -232 5936 5827 1383 157 4 0 chr6 146633246 146633479 -42646075 + L1MB1 LINE L1 5932 6167 -1 455 277 138 21 chr6 146633500 146633688 -42645866 - MIR SINE MIR -49 213 4 2625 91 6 6 chr6 146633744 146634106 -42645448 - THE1B LTR MaLR -2 362 1 1531 214 58 31 chr6 146634228 146634676 -42644878 - MLT1C LTR MaLR -7 460 1 21 0 0 0 chr6 146634740 146634761 -42644793 + AT_rich Low_complexity Low_complexity 1 21 0 638 282 107 0 chr6 146636497 146636703 -42642851 - MIR SINE MIR -21 241 14 216 0 0 0 chr6 146637079 146637103 -42642451 + (T)n Simple_repeat Simple_repeat 1 24 0 824 137 0 15 chr6 146637274 146637405 -42642149 + FLAM_C SINE Alu 1 129 -4 221 221 0 29 chr6 146637424 146637492 -42642062 + (TA)n Simple_repeat Simple_repeat 1 66 0 1290 158 17 4 chr6 146638165 146638399 -42641155 - L1MA6 LINE L1 -5 6295 6059 228 35 0 0 chr6 146638519 146638548 -42641006 + (CA)n Simple_repeat Simple_repeat 2 30 0 229 333 65 37 chr6 146638700 146638808 -42640746 - L2 LINE L2 -6 3266 3156 207 0 0 0 chr6 146640083 146640106 -42639448 + (CAA)n Simple_repeat Simple_repeat 2 24 0 332 262 203 53 chr6 146640772 146640959 -42638595 + MIR SINE MIR 1 215 -47 1768 142 33 7 chr6 146641035 146641343 -42638211 + AluSx SINE Alu 1 315 0 254 316 0 0 chr6 146641665 146641741 -42637813 + CT-rich Low_complexity Low_complexity 1 76 0 297 0 0 0 chr6 146642288 146642321 -42637233 + (CA)n Simple_repeat Simple_repeat 2 34 0 189 305 34 34 chr6 146642583 146642701 -42636853 - L2 LINE L2 -1265 2049 1932 415 272 61 85 chr6 146643191 146643321 -42636233 + L1MC/D LINE L1 5486 5609 -2199 1765 109 117 8 chr6 146643321 146643587 -42635967 + AluSx SINE Alu 1 295 -17 415 272 61 85 chr6 146643587 146643702 -42635852 + L1MC/D LINE L1 5609 5725 -2083 435 314 174 3 chr6 146644864 146645157 -42634397 + L1MC4a LINE L1 5578 5920 -1888 1040 189 50 40 chr6 146645159 146645299 -42634255 - MER58A DNA MER1_type -2196 224 80 1768 112 60 91 chr6 146645299 146645684 -42633870 - THE1C LTR MaLR -2 373 1 1040 189 50 40 chr6 146645684 146645765 -42633789 - MER58A DNA MER1_type -2340 80 1 1197 108 0 0 chr6 146646533 146646690 -42632864 - AluSc SINE Alu -22 287 131 853 151 0 8 chr6 146646998 146647124 -42632430 + AluSq/x SINE Alu 1 125 -187 3158 252 109 22 chr6 146647124 146648329 -42631225 - L1MC4 LINE L1 -40 8002 6692 3402 131 30 59 chr6 146648365 146648675 -42630879 + MER49 LTR ERV1 1 286 -637 2081 107 0 4 chr6 146648675 146648998 -42630556 - AluSg SINE Alu 0 322 1 3402 131 30 59 chr6 146648998 146649314 -42630240 + MER49 LTR ERV1 286 610 -313 271 128 0 0 chr6 146649314 146649353 -42630201 - 5S rRNA rRNA -82 39 1 * 1911 170 18 9 chr6 146649350 146649680 -42629874 + MER49 LTR ERV1 591 923 0 2363 229 129 49 chr6 146649689 146650317 -42629237 - L1MC4a LINE L1 -1212 6596 5873 1742 157 0 31 chr6 146650317 146650611 -42628943 - AluJb SINE Alu -4 308 24 2363 229 129 49 chr6 146650611 146650879 -42628675 - L1MC4a LINE L1 -1935 5873 5628 22 35 0 0 chr6 146650976 146651005 -42628549 + AT_rich Low_complexity Low_complexity 1 29 0 648 290 68 9 chr6 146652952 146653173 -42626381 + MIR SINE MIR 2 235 -27 638 218 15 76 chr6 146653891 146654088 -42625466 - L2 LINE L2 0 3313 3129 2127 118 0 9 chr6 146654088 146654403 -42625151 + AluSx SINE Alu 1 312 0 765 169 0 0 chr6 146654458 146654606 -42624948 + AluJb SINE Alu 159 306 0 287 339 52 0 chr6 146654646 146654761 -42624793 - L2 LINE L2 -243 3070 2950 1572 152 6 82 chr6 146654875 146655203 -42624351 + AluSx SINE Alu 1 303 -9 300 200 29 0 chr6 146655363 146655433 -42624121 - MER116 DNA Mariner 0 80 9 741 232 16 0 chr6 146655505 146655695 -42623859 - L1MD3 LINE L1 -19 7976 7784 846 172 0 6 chr6 146656960 146657117 -42622437 - L1MA9 LINE L1 -38 6274 6119 360 0 0 0 chr6 146657422 146657462 -42622092 + (CA)n Simple_repeat Simple_repeat 1 40 0 316 245 143 0 chr6 146658420 146658518 -42621036 - MIR SINE MIR -29 233 122 623 122 19 0 chr6 146659399 146659506 -42620048 + CT-rich Low_complexity Low_complexity 3 111 0 1993 146 0 16 chr6 146659508 146659823 -42619731 - AluSx SINE Alu -2 310 1 27 0 0 0 chr6 146659826 146659853 -42619701 + AT_rich Low_complexity Low_complexity 1 27 0 2187 131 25 43 chr6 146660018 146660415 -42619139 + MLT1B LTR MaLR 1 390 0 342 305 114 15 chr6 146660595 146660726 -42618828 - L2 LINE L2 0 3272 3129 188 35 35 0 chr6 146660855 146660884 -42618670 + (TG)n Simple_repeat Simple_repeat 2 31 0 303 376 0 9 chr6 146660986 146661095 -42618459 + MIR SINE MIR 24 131 -77 334 311 53 23 chr6 146661521 146661653 -42617901 + MIR SINE MIR 119 254 -8 576 294 76 38 chr6 146662085 146662530 -42617024 + L1ME4a LINE L1 5637 6098 -23 470 263 44 29 chr6 146663503 146663640 -42615914 + MIR SINE MIR 110 248 -14 2251 119 0 0 chr6 146664874 146665185 -42614369 + AluSx SINE Alu 1 311 -1 195 206 206 0 chr6 146665191 146665254 -42614300 + MIR SINE MIR 176 251 -11 284 287 72 58 chr6 146665267 146665490 -42614064 - L3 LINE CR1 -286 1291 1066 2364 117 42 99 chr6 146665558 146665781 -42613773 + MSTA LTR MaLR 1 186 -242 2190 102 9 22 chr6 146665781 146666096 -42613458 + AluSp SINE Alu 3 313 0 2364 117 42 99 chr6 146666096 146666326 -42613228 + MSTA LTR MaLR 186 428 0 252 250 150 10 chr6 146666475 146666575 -42612979 - L3 LINE CR1 -1113 464 351 228 35 0 0 chr6 146666585 146666614 -42612940 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 234 216 0 0 chr6 146666634 146666685 -42612869 + L2 LINE L2 3222 3272 0 2052 124 0 3 chr6 146666850 146667141 -42612413 - AluSx SINE Alu -22 290 1 21 0 0 0 chr6 146667658 146667679 -42611875 + AT_rich Low_complexity Low_complexity 1 21 0 383 281 37 7 chr6 146667832 146667967 -42611587 - MIR3 SINE MIR -67 141 3 1821 269 66 50 chr6 146667978 146668896 -42610658 - L2 LINE L2 0 3313 2375 1788 144 0 85 chr6 146668896 146669237 -42610317 + AluJo SINE Alu 1 312 0 1821 269 66 50 chr6 146669237 146669331 -42610223 - L2 LINE L2 -938 2375 2284 403 209 0 170 chr6 146669497 146669650 -42609904 + L2 LINE L2 3187 3313 0 4824 126 20 9 chr6 146670200 146670882 -42608672 - LTR8 LTR ERV1 0 691 2 275 263 100 19 chr6 146671569 146671729 -42607825 + MIR SINE MIR 80 252 -10 2197 113 7 0 chr6 146672195 146672488 -42607066 - AluSx SINE Alu -17 295 1 1117 277 91 11 chr6 146672873 146673342 -42606212 + L2 LINE L2 2794 3300 -13 1952 100 11 0 chr6 146673832 146674102 -42605452 - L1PA13 LINE L1 -3 6160 5888 579 139 0 0 chr6 146674345 146674424 -42605130 - AluJ/FLAM SINE Alu -229 83 5 216 0 0 0 chr6 146674515 146674539 -42605015 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2000 154 0 0 chr6 146675342 146675640 -42603914 + AluSx SINE Alu 3 300 -12 21 0 0 0 chr6 146676361 146676382 -42603172 + AT_rich Low_complexity Low_complexity 1 21 0 2118 133 0 13 chr6 146676477 146676794 -42602760 + AluSq SINE Alu 1 313 0 216 0 0 0 chr6 146677327 146677351 -42602203 + (TAA)n Simple_repeat Simple_repeat 3 26 0 21 57 0 0 chr6 146677949 146677984 -42601570 + AT_rich Low_complexity Low_complexity 1 35 0 366 340 26 19 chr6 146678890 146679046 -42600508 - MIR SINE MIR -99 163 7 21 0 0 0 chr6 146679741 146679762 -42599792 + AT_rich Low_complexity Low_complexity 1 21 0 2393 296 48 24 chr6 146679772 146681355 -42598199 + HERV16 LTR ERVL 732 2418 -2578 2959 88 11 11 chr6 146681408 146681783 -42597771 - THE1C LTR MaLR 0 375 1 1964 199 20 75 chr6 146681983 146682476 -42597078 - MLT1C LTR MaLR 0 467 2 708 163 32 8 chr6 146682510 146682633 -42596921 + FLAM_A SINE Alu 1 126 -7 182 320 77 26 chr6 146682725 146682881 -42596673 - L2 LINE L2 -2420 894 731 1094 228 13 39 chr6 146683117 146683438 -42596116 - L1MC4 LINE L1 -733 7228 6939 1454 208 110 29 chr6 146683705 146684157 -42595397 + MLT1G LTR MaLR 13 528 -62 1767 164 119 0 chr6 146684157 146684467 -42595087 - MER7A DNA MER2_type 0 346 2 1454 208 110 29 chr6 146684467 146684536 -42595018 + MLT1G LTR MaLR 528 590 0 812 287 84 43 chr6 146684788 146684969 -42594585 + L1MC4 LINE L1 5292 5464 -2344 863 198 112 33 chr6 146684969 146685211 -42594343 + MIR SINE MIR 2 262 0 812 287 84 43 chr6 146685211 146685514 -42594040 + L1MC4 LINE L1 5464 5796 -2012 378 274 71 74 chr6 146686954 146687264 -42592290 + L2 LINE L2 3005 3313 0 1971 114 0 0 chr6 146687458 146687712 -42591842 + AluSx SINE Alu 1 254 -58 261 250 0 22 chr6 146687717 146687809 -42591745 - L1MC4 LINE L1 -1339 6703 6614 264 253 23 0 chr6 146687813 146687900 -42591654 - L1MC4 LINE L1 -1339 6703 6615 225 186 17 34 chr6 146687883 146687942 -42591612 - L1MCa LINE L1 -4363 2063 2006 * 255 174 0 0 chr6 146687941 146687987 -42591567 - L1MC4 LINE L1 -1339 6703 6658 276 233 0 0 chr6 146687989 146688062 -42591492 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 285 281 22 0 chr6 146688071 146688160 -42591394 - L1MC4 LINE L1 -1339 6703 6613 * 297 291 0 19 chr6 146688084 146688187 -42591367 + L1MC4 LINE L1 6615 6715 -1327 26 30 0 0 chr6 146688305 146688338 -42591216 + AT_rich Low_complexity Low_complexity 1 33 0 2362 88 0 3 chr6 146688355 146688660 -42590894 - AluY SINE Alu -7 304 1 274 357 50 14 chr6 146689243 146689383 -42590171 + L2 LINE L2 2917 3061 -211 522 163 0 0 chr6 146689671 146689751 -42589803 + MADE1 DNA Mariner 1 80 0 246 387 35 42 chr6 146690081 146690223 -42589331 + L2 LINE L2 3107 3247 -25 1042 252 91 44 chr6 146690307 146690585 -42588969 - HAL1 LINE L1 -1975 532 226 2047 115 7 0 chr6 146690585 146690864 -42588690 - AluSg SINE Alu -29 281 1 1042 252 91 44 chr6 146690864 146691013 -42588541 - HAL1 LINE L1 -2281 226 85 1312 206 63 14 chr6 146691019 146691306 -42588248 + AluJo SINE Alu 1 301 -11 22 35 0 0 chr6 146691370 146691399 -42588155 + AT_rich Low_complexity Low_complexity 1 29 0 228 278 14 0 chr6 146691406 146691478 -42588076 - L1ME3 LINE L1 -9 6153 6081 277 128 43 0 chr6 146691623 146691670 -42587884 + MLT1C LTR MaLR 2 50 -417 647 221 23 70 chr6 146691671 146691801 -42587753 - L1MEc LINE L1 -2820 3395 3281 1423 149 51 78 chr6 146691801 146692097 -42587457 + AluJb SINE Alu 2 289 -23 647 221 23 70 chr6 146692097 146692224 -42587330 - L1MEc LINE L1 -2934 3281 3150 1964 152 0 7 chr6 146692226 146692528 -42587026 - AluJb SINE Alu -12 300 1 1222 278 94 31 chr6 146692543 146692867 -42586687 - L1MEc LINE L1 -4428 1968 1666 2123 149 133 13 chr6 146692867 146693249 -42586305 - MSTA LTR MaLR 0 428 1 1222 278 94 31 chr6 146693249 146693689 -42585865 - L1MEc LINE L1 -4730 1666 1156 283 313 93 27 chr6 146695776 146695926 -42583628 + Charlie8 DNA MER1_type 1 160 -2257 377 252 74 15 chr6 146696202 146696337 -42583217 + L1ME1 LINE L1 1292 1434 -5425 192 152 0 0 chr6 146696354 146696387 -42583167 + (TA)n Simple_repeat Simple_repeat 2 34 0 1861 258 168 40 chr6 146696396 146697905 -42581649 + L1ME1 LINE L1 2583 4316 -2641 1810 168 13 10 chr6 146697905 146698209 -42581345 - AluJb SINE Alu -7 305 1 1861 258 168 40 chr6 146698209 146698441 -42581113 + L1ME1 LINE L1 4316 4517 -2440 * 3905 184 34 112 chr6 146698418 146700606 -42578948 + L1ME1 LINE L1 4962 6973 -4 3193 131 2 7 chr6 146700724 146701174 -42578380 - MER83 LTR ERV1 0 448 1 331 246 0 0 chr6 146701544 146701609 -42577945 - MIR SINE MIR -120 142 78 2275 110 0 0 chr6 146702317 146702618 -42576936 - AluSx SINE Alu -11 301 1 544 237 87 98 chr6 146702717 146702983 -42576571 + Charlie8 DNA MER1_type 1 263 -2154 501 248 53 66 chr6 146703170 146703396 -42576158 - MARNA DNA Mariner -91 495 273 1446 216 64 115 chr6 146703539 146704184 -42575370 - LTR9 LTR ERV1 0 612 1 246 218 231 0 chr6 146704400 146704478 -42575076 + MARNA DNA Mariner 460 555 -31 197 280 178 45 chr6 146706629 146706786 -42572768 + MIR SINE MIR 10 187 -75 1582 192 7 4 chr6 146707714 146707990 -42571564 + AluJb SINE Alu 1 277 -35 309 265 29 49 chr6 146708966 146709068 -42570486 - L1MC4 LINE L1 -1317 6725 6626 2504 118 36 3 chr6 146709072 146709461 -42570093 - LTR23 LTR ERV1 -35 402 1 1516 199 8 60 chr6 146710212 146710488 -42569066 - MER4D LTR ERV1 0 903 647 1945 138 7 3 chr6 146710488 146710777 -42568777 - AluSx SINE Alu -20 292 3 1516 199 8 60 chr6 146710777 146710851 -42568703 - MER4D LTR ERV1 -256 647 571 1887 125 0 81 chr6 146710860 146711180 -42568374 + AluSx SINE Alu 1 294 -18 1496 194 21 4 chr6 146711234 146711513 -42568041 - MER49 LTR ERV1 -639 284 1 261 192 19 0 chr6 146711749 146711801 -42567753 - LTR23-int LTR ERV1 -2483 2640 2588 707 208 0 0 chr6 146711803 146711923 -42567631 + FLAM_C SINE Alu 2 121 -22 679 140 0 26 chr6 146712035 146712149 -42567405 - LTR23 LTR ERV1 -5 432 322 2181 89 0 63 chr6 146713342 146713658 -42565896 - AluSx SINE Alu -16 296 1 258 240 33 116 chr6 146714436 146714557 -42564997 - MIR SINE MIR -50 212 102 531 281 13 20 chr6 146714569 146714722 -42564832 - MER5A DNA MER1_type -10 179 28 504 192 131 0 chr6 146715240 146715339 -42564215 + AluJb SINE Alu 7 118 -194 309 100 0 0 chr6 146715339 146715389 -42564165 + (TC)n Simple_repeat Simple_repeat 1 50 0 294 29 0 0 chr6 146715389 146715424 -42564130 + (CA)n Simple_repeat Simple_repeat 1 35 0 2831 181 81 53 chr6 146715800 146716002 -42563552 + Charlie1a DNA MER1_type 92 287 -2474 2362 74 0 7 chr6 146716002 146716299 -42563255 + AluY SINE Alu 1 295 -16 2831 181 81 53 chr6 146716299 146716907 -42562647 + Charlie1a DNA MER1_type 287 925 -530 390 169 0 0 chr6 146717767 146717838 -42561716 + Charlie1a DNA MER1_type 955 1025 -430 878 119 4 183 chr6 146717972 146718207 -42561347 + 7SK RNA RNA 1 193 0 287 286 98 23 chr6 146718277 146718410 -42561144 - MIR SINE MIR -46 216 74 184 299 235 29 chr6 146718428 146718632 -42560922 + MIR SINE MIR 5 250 -12 525 226 174 26 chr6 146718720 146718875 -42560679 + MER5A DNA MER1_type 9 186 -3 388 257 95 9 chr6 146719959 146720064 -42559490 + MIR3 SINE MIR 77 190 -18 221 265 29 0 chr6 146720750 146720818 -42558736 + MIR SINE MIR 188 257 -5 852 264 12 29 chr6 146721380 146721626 -42557928 + MIR SINE MIR 5 246 -16 1225 299 6 97 chr6 146722080 146722420 -42557134 - AluSx SINE Alu 0 312 1 2223 105 3 0 chr6 146722445 146722749 -42556805 + AluSx SINE Alu 1 305 -7 608 221 25 59 chr6 146723042 146723246 -42556308 - MER3 DNA MER1_type -8 201 5 21 36 0 0 chr6 146726104 146726132 -42553422 + AT_rich Low_complexity Low_complexity 1 28 0 186 250 47 0 chr6 146726323 146726387 -42553167 - L2 LINE L2 -977 2337 2271 207 186 0 0 chr6 146727178 146727221 -42552333 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 509 279 106 61 chr6 146727242 146727639 -42551915 - LTR33A LTR ERVL -11 512 60 483 286 0 7 chr6 146727693 146727833 -42551721 - LTR16A LTR ERVL -9 441 303 279 194 0 0 chr6 146727864 146727926 -42551628 - LTR16A LTR ERVL -86 364 303 1989 137 3 16 chr6 146728496 146728811 -42550743 + AluJb SINE Alu 1 311 -1 3951 174 76 20 chr6 146728906 146729819 -42549735 - L1MC3 LINE L1 -8 7777 6814 256 284 11 11 chr6 146730264 146730352 -42549202 - MLT1G LTR MaLR -72 495 408 417 146 47 88 chr6 146730424 146730552 -42549002 - MLT1G LTR MaLR -273 322 187 523 269 87 52 chr6 146730559 146731005 -42548549 - L1ME4a LINE L1 -296 5825 5364 341 293 195 0 chr6 146731138 146731312 -42548242 - L1ME4a LINE L1 -946 5200 4993 2099 82 0 92 chr6 146732193 146732521 -42547033 - AluSg SINE Alu -12 298 1 264 314 116 0 chr6 146732634 146732720 -42546834 - MIR3 SINE MIR -32 176 81 23 33 0 0 chr6 146733191 146733221 -42546333 + AT_rich Low_complexity Low_complexity 1 30 0 1599 83 39 4 chr6 146733221 146733451 -42546103 - L1PA11 LINE L1 -2 6172 5935 2334 103 0 3 chr6 146733775 146734076 -42545478 - AluSq SINE Alu -13 300 1 180 0 0 0 chr6 146734078 146734098 -42545456 + (TG)n Simple_repeat Simple_repeat 2 21 0 423 0 0 0 chr6 146734833 146734880 -42544674 + (TG)n Simple_repeat Simple_repeat 2 48 0 2362 88 17 0 chr6 146734910 146735207 -42544347 + AluSx SINE Alu 1 302 -10 350 254 102 34 chr6 146735510 146735687 -42543867 - L1ME LINE L1 -5133 937 749 467 323 41 14 chr6 146735691 146736053 -42543501 + L1MEc LINE L1 1317 1688 -4708 351 283 116 48 chr6 146736199 146736725 -42542829 + L1MEc LINE L1 3092 3653 -2562 438 335 48 57 chr6 146736776 146737186 -42542368 - HAL1 LINE L1 -1074 1433 701 243 241 138 26 chr6 146737354 146737470 -42542084 - L1ME4a LINE L1 -191 5930 5802 321 266 89 12 chr6 146737527 146737696 -42541858 - L1ME4a LINE L1 -310 5811 5630 230 373 73 10 chr6 146738174 146738378 -42541176 - MIR SINE MIR -6 256 40 * 375 261 52 0 chr6 146738361 146738476 -42541078 + L2 LINE L2 3193 3313 0 436 304 71 38 chr6 146739286 146739470 -42540084 - L2 LINE L2 -5 3267 3078 504 287 89 5 chr6 146739730 146739932 -42539622 + MIR SINE MIR 44 262 0 193 253 241 0 chr6 146740397 146740484 -42539070 + L2 LINE L2 3203 3310 -3 215 132 26 0 chr6 146741625 146741663 -42537891 + (TG)n Simple_repeat Simple_repeat 2 40 0 3977 188 21 27 chr6 146741862 146742715 -42536839 + Tigger6a DNA MER2_type 1 848 -235 1438 101 120 0 chr6 146742716 146742924 -42536630 - AluSg1 SINE Alu -14 295 63 1390 146 36 4 chr6 146743270 146743545 -42536009 - MER57-int LTR ERV1 -2799 4738 4455 230 0 33 0 chr6 146743546 146743576 -42535978 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2641 57 6 0 chr6 146743576 146743912 -42535642 - L1PA4 LINE L1 -18 6137 5800 281 296 106 38 chr6 146744056 146744188 -42535366 + MIR SINE MIR 118 258 -4 330 102 0 0 chr6 146745106 146745155 -42534399 + U6 snRNA snRNA 1 49 -58 180 0 0 0 chr6 146745164 146745184 -42534370 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 210 37 0 0 chr6 146745273 146745300 -42534254 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2155 100 7 17 chr6 146745619 146745920 -42533634 + AluSx SINE Alu 1 298 -14 728 188 16 8 chr6 146746067 146746195 -42533359 + FLAM_C SINE Alu 1 129 -4 733 174 8 15 chr6 146746479 146746611 -42532943 + FLAM_A SINE Alu 2 132 -1 477 191 48 0 chr6 146746660 146746765 -42532789 - L1MB1 LINE L1 -232 5936 5827 1365 157 4 0 chr6 146746765 146746998 -42532556 + L1MB1 LINE L1 5932 6167 -1 471 277 138 21 chr6 146747019 146747207 -42532347 - MIR SINE MIR -49 213 4 2635 91 6 6 chr6 146747263 146747625 -42531929 - THE1B LTR MaLR -2 362 1 1395 214 58 31 chr6 146747747 146748195 -42531359 - MLT1C LTR MaLR -7 460 1 21 0 0 0 chr6 146748259 146748280 -42531274 + AT_rich Low_complexity Low_complexity 1 21 0 768 169 0 0 chr6 146749484 146749662 -42529892 + (GAATG)n Satellite Satellite 3 180 0 1161 96 0 0 chr6 146749690 146749868 -42529686 + (GAATG)n Satellite Satellite 2 179 0 1017 141 3 3 chr6 146749887 146750510 -42529044 + (GAATG)n Satellite Satellite 2 802 0 984 118 0 0 chr6 146750532 146750744 -42528810 + (GAATG)n Satellite Satellite 1 212 0 843 135 0 0 chr6 146750768 146750938 -42528616 + (GAATG)n Satellite Satellite 3 172 0 1200 111 1 1 chr6 146750965 146751558 -42527996 + (GAATG)n Satellite Satellite 1 773 0 1245 89 0 21 chr6 146751569 146751939 -42527615 + (GAATG)n Satellite Satellite 2 538 0 619 145 7 7 chr6 146751961 146752106 -42527448 + (GAATG)n Satellite Satellite 3 147 0 1749 64 12 0 chr6 146752106 146752357 -42527197 + L1P LINE L1 4416 4669 -1477 1019 231 7 14 chr6 146752497 146752779 -42526775 + L1MA8 LINE L1 2416 2695 -3451 672 73 0 10 chr6 146752786 146752882 -42526672 + MER4A LTR ERV1 3 97 -567 1726 99 25 79 chr6 146752884 146753251 -42526303 + MER4A LTR ERV1 262 664 0 2578 229 45 11 chr6 146753255 146754101 -42525453 + L1MA8 LINE L1 2701 3575 -2571 * 2944 0 0 0 chr6 146754092 146754433 -42525121 + L1HS LINE L1 5815 6155 0 2127 125 0 23 chr6 146754461 146754765 -42524789 + AluSq SINE Alu 12 308 -5 9506 154 18 11 chr6 146754766 146756419 -42523135 + L1MA8 LINE L1 3572 5249 -1042 1275 168 35 0 chr6 146756419 146756645 -42522909 - MER46A DNA MER2_type -1 235 2 9506 154 18 11 chr6 146756645 146757531 -42522023 + L1MA8 LINE L1 5249 6127 -164 694 265 84 14 chr6 146757902 146758117 -42521437 - MIR SINE MIR -19 243 14 2197 117 0 0 chr6 146758469 146758760 -42520794 + AluSx SINE Alu 1 291 -21 732 241 6 12 chr6 146758823 146758989 -42520565 - MER5B DNA MER1_type -7 171 7 565 271 102 0 chr6 146759034 146759211 -42520343 + MIR SINE MIR 64 258 -4 315 85 0 0 chr6 146759225 146759272 -42520282 + (ATG)n Simple_repeat Simple_repeat 1 47 0 1090 279 36 41 chr6 146760278 146760693 -42518861 - L2 LINE L2 0 3313 2901 8435 146 24 14 chr6 146760963 146762391 -42517163 + L1M1 LINE L1 20 1461 -6104 208 163 23 0 chr6 146762391 146762434 -42517120 + CT-rich Low_complexity Low_complexity 1 44 0 600 27 0 0 chr6 146762434 146762509 -42517045 - L1PA5 LINE L1 -1 6153 6079 1063 169 15 10 chr6 146762516 146763335 -42516219 + ALR/Alpha Satellite centromeric 1 815 -1547 2205 98 14 3 chr6 146763335 146763630 -42515924 + AluY SINE Alu 1 298 -13 1063 169 15 10 chr6 146763630 146764848 -42514706 + ALR/Alpha Satellite centromeric 815 2342 -20 345 75 0 0 chr6 146764857 146764910 -42514644 + (A)n Simple_repeat Simple_repeat 1 53 0 993 183 11 4 chr6 146764932 146768675 -42510879 + ALR/Alpha Satellite centromeric 1 3803 -775 180 0 0 0 chr6 146768675 146768695 -42510859 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 993 183 11 4 chr6 146768695 146769409 -42510145 + ALR/Alpha Satellite centromeric 3803 4510 -68 863 176 12 2 chr6 146769421 146770192 -42509362 + ALR/Alpha Satellite centromeric 1 778 -32 294 106 0 0 chr6 146770198 146770245 -42509309 + (CATTC)n Satellite Satellite 4 50 0 1092 96 0 0 chr6 146770256 146770433 -42509121 + (CATTC)n Satellite Satellite 2 178 0 986 117 6 0 chr6 146770464 146770643 -42508911 + (CATTC)n Satellite Satellite 1 180 0 1155 121 9 3 chr6 146770654 146770975 -42508579 + (CATTC)n Satellite Satellite 2 324 0 530 258 129 12 chr6 146771302 146771590 -42507964 + MLT1G3 LTR MaLR 13 352 -243 762 299 199 7 chr6 146771599 146771839 -42507715 - L2 LINE L2 -253 3060 2867 300 53 0 0 chr6 146771839 146771877 -42507677 + (TTG)n Simple_repeat Simple_repeat 2 39 0 762 299 199 7 chr6 146771877 146772056 -42507498 - L2 LINE L2 -446 2867 2564 1213 210 33 57 chr6 146772585 146772951 -42506603 + MLT1B LTR MaLR 15 371 -19 279 191 6 49 chr6 146772966 146773128 -42506426 + (TA)n Simple_repeat Simple_repeat 1 155 0 652 291 74 53 chr6 146773601 146774097 -42505457 + L2 LINE L2 2755 3261 -52 768 297 70 31 chr6 146774615 146775060 -42504494 + L2 LINE L2 2839 3300 -13 264 59 0 0 chr6 146775060 146775094 -42504460 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1781 145 30 82 chr6 146775231 146775272 -42504282 - MER7A DNA MER2_type -2692 346 304 312 70 0 0 chr6 146775272 146775341 -42504213 + L1PA3 LINE L1 6103 6171 0 1592 131 82 21 chr6 146775343 146775671 -42503883 + L1MA6 LINE L1 5953 6300 0 1781 145 30 82 chr6 146775671 146775991 -42503563 - MER7A DNA MER2_type -2735 303 2 228 377 19 9 chr6 146776139 146776245 -42503309 - MIR SINE MIR -152 110 4 259 260 0 65 chr6 146776766 146776843 -42502711 - L2 LINE L2 0 3313 3242 200 295 171 39 chr6 146777008 146777137 -42502417 + L2 LINE L2 3123 3268 -4 21 36 0 0 chr6 146777314 146777342 -42502212 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr6 146777534 146777573 -42501981 + AT_rich Low_complexity Low_complexity 1 39 0 191 88 29 0 chr6 146777641 146777675 -42501879 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 611 221 41 35 chr6 146778155 146778327 -42501227 - MIR SINE MIR -23 239 67 455 206 120 28 chr6 146778380 146778581 -42500973 + MLT1H LTR MaLR 322 549 0 514 300 35 86 chr6 146778594 146779050 -42500504 + L2 LINE L2 2030 2462 -852 508 232 63 32 chr6 146779050 146779361 -42500193 + MLT1G1 LTR MaLR 131 559 -36 641 282 42 46 chr6 146779375 146779634 -42499920 + MLT1J LTR MaLR 5 262 -249 9396 31 3 0 chr6 146779764 146781655 -42497899 + L1PA4 LINE L1 4259 6152 -3 318 242 0 61 chr6 146781954 146782053 -42497501 + L1MC4 LINE L1 6614 6706 -1336 * 335 257 64 37 chr6 146782044 146782153 -42497401 + L1MC4 LINE L1 6614 6725 -1317 2317 84 0 7 chr6 146782320 146782666 -42496888 - AluY SINE Alu 0 311 1 369 247 11 0 chr6 146782685 146782778 -42496776 + MLT1G1 LTR MaLR 1 94 -501 714 231 46 25 chr6 146782807 146783164 -42496390 + MLT1G1 LTR MaLR 116 590 -5 1921 155 7 3 chr6 146783859 146784155 -42495399 - AluSx SINE Alu -15 297 1 1349 233 81 40 chr6 146784316 146784810 -42494744 - LTR33A LTR ERVL -9 514 1 543 280 136 14 chr6 146785101 146785315 -42494239 + LTR33 LTR ERVL 6 245 -276 624 280 107 33 chr6 146786549 146786792 -42492762 - MIR SINE MIR 0 262 2 307 265 129 47 chr6 146788319 146788489 -42491065 + MIR SINE MIR 47 230 -32 989 279 244 16 chr6 146789325 146790279 -42489275 + L2 LINE L2 2126 3279 -34 4212 187 25 52 chr6 146791345 146792341 -42487213 - LTR5 LTR ERVK 0 969 1 437 275 37 25 chr6 146793062 146793260 -42486294 + L1ME3A LINE L1 5706 5905 -257 1925 93 38 7 chr6 146793599 146793888 -42485666 + L1MA1 LINE L1 5999 6296 -6 1053 305 52 12 chr6 146794032 146794435 -42485119 + L2 LINE L2 2356 2774 -540 3325 95 6 4 chr6 146794441 146794934 -42484620 + L1PB2 LINE L1 5542 6035 -116 1125 160 0 0 chr6 146794941 146795141 -42484413 + L1PBa LINE L1 1 200 -6663 2779 108 7 0 chr6 146795143 146796035 -42483519 + L1PBa LINE L1 636 1724 -5139 21 36 0 0 chr6 146847182 146847210 -42432344 + AT_rich Low_complexity Low_complexity 1 28 0 186 250 47 0 chr6 146847402 146847466 -42432088 - L2 LINE L2 -977 2337 2271 207 186 0 0 chr6 146848256 146848299 -42431255 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 509 279 106 61 chr6 146848320 146848717 -42430837 - LTR33A LTR ERVL -11 512 60 483 286 0 7 chr6 146848771 146848911 -42430643 - LTR16A LTR ERVL -9 441 303 279 194 0 0 chr6 146848942 146849004 -42430550 - LTR16A LTR ERVL -86 364 303 2029 140 0 13 chr6 146849574 146849888 -42429666 + AluJb SINE Alu 1 310 -2 3983 172 76 20 chr6 146849988 146850901 -42428653 - L1MC3 LINE L1 -8 7777 6814 256 284 11 11 chr6 146851346 146851434 -42428120 - MLT1G LTR MaLR -72 495 408 417 146 47 88 chr6 146851506 146851634 -42427920 - MLT1G LTR MaLR -273 322 187 523 269 87 52 chr6 146851641 146852087 -42427467 - L1ME4a LINE L1 -296 5825 5364 341 293 195 0 chr6 146852220 146852394 -42427160 - L1ME4a LINE L1 -946 5200 4993 2117 82 0 91 chr6 146853274 146853604 -42425950 - AluSg SINE Alu -10 300 1 264 314 116 0 chr6 146853717 146853803 -42425751 - MIR3 SINE MIR -32 176 81 23 33 0 0 chr6 146854274 146854304 -42425250 + AT_rich Low_complexity Low_complexity 1 30 0 1599 83 39 4 chr6 146854304 146854534 -42425020 - L1PA11 LINE L1 -2 6172 5935 2334 103 0 3 chr6 146854858 146855159 -42424395 - AluSq SINE Alu -13 300 1 198 0 0 0 chr6 146855161 146855183 -42424371 + (TG)n Simple_repeat Simple_repeat 2 23 0 369 0 0 0 chr6 146855918 146855959 -42423595 + (TG)n Simple_repeat Simple_repeat 2 42 0 2391 87 17 0 chr6 146855989 146856289 -42423265 + AluSx SINE Alu 1 305 -7 350 254 102 34 chr6 146856592 146856769 -42422785 - L1ME LINE L1 -5133 937 749 483 320 41 14 chr6 146856773 146857135 -42422419 + L1MEc LINE L1 1317 1688 -4708 351 283 116 48 chr6 146857281 146857807 -42421747 + L1MEc LINE L1 3092 3653 -2562 450 333 63 56 chr6 146857858 146858268 -42421286 - HAL1 LINE L1 -1074 1433 701 243 241 138 26 chr6 146858436 146858552 -42421002 - L1ME4a LINE L1 -191 5930 5802 321 266 89 12 chr6 146858609 146858778 -42420776 - L1ME4a LINE L1 -310 5811 5630 230 373 73 10 chr6 146859256 146859460 -42420094 - MIR SINE MIR -6 256 40 * 375 261 52 0 chr6 146859443 146859558 -42419996 + L2 LINE L2 3193 3313 0 436 304 71 38 chr6 146860368 146860552 -42419002 - L2 LINE L2 -5 3267 3078 504 287 89 5 chr6 146860812 146861014 -42418540 + MIR SINE MIR 44 262 0 193 253 241 0 chr6 146861479 146861566 -42417988 + L2 LINE L2 3203 3310 -3 215 132 26 0 chr6 146862706 146862744 -42416810 + (TG)n Simple_repeat Simple_repeat 2 40 0 4379 182 23 32 chr6 146862943 146863792 -42415762 + Tigger6a DNA MER2_type 1 841 -756 1989 106 88 0 chr6 146863792 146864076 -42415478 - AluSg1 SINE Alu 0 309 1 4379 182 23 32 chr6 146864076 146864186 -42415368 + Tigger6a DNA MER2_type 841 951 -132 1880 102 15 15 chr6 146864197 146864471 -42415083 - AluSx SINE Alu -5 307 34 251 299 60 0 chr6 146864826 146864893 -42414661 + L2 LINE L2 3148 3218 -54 595 296 29 17 chr6 146865696 146865868 -42413686 - MIR3 SINE MIR -15 193 20 497 217 67 0 chr6 146866118 146866238 -42413316 - L1ME3A LINE L1 -5 6165 6038 865 201 6 6 chr6 146866305 146866474 -42413080 + FRAM SINE Alu 1 169 -7 402 21 0 0 chr6 146866602 146866649 -42412905 + (TG)n Simple_repeat Simple_repeat 1 47 0 27 0 0 0 chr6 146867256 146867283 -42412271 + AT_rich Low_complexity Low_complexity 1 27 0 221 338 14 0 chr6 146867913 146867987 -42411567 - L2 LINE L2 0 3313 3239 1520 184 0 0 chr6 146869321 146869571 -42409983 - AluJo SINE Alu -19 293 44 393 190 38 101 chr6 146870154 146870312 -42409242 - L1MC5 LINE L1 -44 7917 7770 1283 151 49 0 chr6 146871094 146871319 -42408235 - MER46A DNA MER2_type 0 236 1 1870 138 39 0 chr6 146872878 146872990 -42406564 + AluJo SINE Alu 11 117 -195 180 0 0 0 chr6 146872990 146873010 -42406544 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1870 138 39 0 chr6 146873010 146873180 -42406374 + AluJo SINE Alu 117 304 -8 2047 136 0 0 chr6 146874084 146874371 -42405183 - AluSx SINE Alu -25 287 1 7025 26 0 0 chr6 146874985 146875827 -42403727 - L1PA2 LINE L1 -743 5403 4562 6379 19 0 0 chr6 146875827 146876559 -42402995 + L1PA2 LINE L1 5421 6155 0 576 280 18 42 chr6 146877609 146877777 -42401777 + MIR3 SINE MIR 38 201 -7 1491 102 0 0 chr6 146878130 146878327 -42401227 - AluSc SINE Alu -10 299 103 2259 123 23 40 chr6 146878361 146878760 -42400794 - LTR3 LTR ERVK -36 396 5 736 120 19 0 chr6 146878762 146878870 -42400684 - AluSc SINE Alu -199 110 1 25 0 0 0 chr6 146879710 146879735 -42399819 + AT_rich Low_complexity Low_complexity 1 25 0 704 235 32 69 chr6 146879821 146880038 -42399516 + MIR SINE MIR 49 257 -5 2299 98 3 0 chr6 146880633 146880940 -42398614 + AluSq SINE Alu 1 308 -5 2658 176 18 110 chr6 146881106 146881867 -42397687 - LTR8 LTR ERV1 0 691 1 34 0 0 0 chr6 146882139 146882173 -42397381 + AT_rich Low_complexity Low_complexity 1 34 0 2035 91 30 40 chr6 146882378 146882675 -42396879 + AluSc SINE Alu 1 294 -15 282 113 19 19 chr6 146884360 146884413 -42395141 + MADE1 DNA Mariner 27 79 -1 2248 107 3 7 chr6 146884457 146884767 -42394787 + AluSx SINE Alu 1 309 -3 285 140 0 0 chr6 146886631 146886688 -42392866 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 21 36 0 0 chr6 146887006 146887034 -42392520 + AT_rich Low_complexity Low_complexity 1 28 0 1619 168 33 26 chr6 146887181 146887485 -42392069 - AluJo SINE Alu -6 306 1 186 43 0 0 chr6 146887642 146887665 -42391889 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2055 102 0 81 chr6 146888292 146888625 -42390929 + AluSx SINE Alu 1 306 -6 2120 104 4 0 chr6 146889552 146889830 -42389724 + AluSc SINE Alu 11 289 -20 23 33 0 0 chr6 146889955 146889985 -42389569 + AT_rich Low_complexity Low_complexity 1 30 0 240 256 0 0 chr6 146890489 146890575 -42388979 + (TGGA)n Simple_repeat Simple_repeat 1 86 0 255 146 109 0 chr6 146891145 146891200 -42388354 - L1ME4a LINE L1 -100 6021 5961 804 192 40 62 chr6 146891922 146892146 -42387408 - MER20 DNA MER1_type 0 219 1 4004 124 16 41 chr6 146893258 146893967 -42385587 + L1PB4 LINE L1 5465 6155 -1 338 214 0 60 chr6 146895203 146895287 -42384267 + MIR SINE MIR 184 262 0 305 318 198 5 chr6 146895291 146895483 -42384071 + MIR SINE MIR 18 246 -16 1183 108 0 0 chr6 146896455 146896612 -42382942 + AluSg/x SINE Alu 152 308 -2 297 0 0 0 chr6 146896612 146896645 -42382909 + (TA)n Simple_repeat Simple_repeat 2 34 0 1750 178 0 7 chr6 146896860 146897158 -42382396 + AluJo SINE Alu 3 298 -14 239 219 82 27 chr6 146898068 146898141 -42381413 + MIR SINE MIR 110 186 -76 380 250 103 103 chr6 146898892 146899027 -42380527 + MIR3 SINE MIR 19 156 -52 2466 73 0 13 chr6 146899027 146899341 -42380213 + AluY SINE Alu 1 310 -1 380 250 103 103 chr6 146899341 146899389 -42380165 + MIR3 SINE MIR 155 202 -6 1087 62 0 0 chr6 146900353 146900481 -42379073 + AluY SINE Alu 7 134 -177 2028 125 3 3 chr6 146900481 146900770 -42378784 + AluSx SINE Alu 1 289 -23 252 0 0 0 chr6 146900777 146900805 -42378749 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 347 84 67 17 chr6 146901304 146901423 -42378131 + (TA)n Simple_repeat Simple_repeat 2 126 0 1649 173 13 26 chr6 146903234 146903541 -42376013 + AluJo SINE Alu 1 303 -9 854 143 0 0 chr6 146905676 146905809 -42373745 - FLAM_C SINE Alu 0 133 1 1339 79 0 0 chr6 146906140 146906305 -42373249 - AluY SINE Alu -14 297 133 2327 79 0 23 chr6 146906305 146906610 -42372944 - AluY SINE Alu -13 298 1 2067 108 17 3 chr6 146906610 146906907 -42372647 - AluSx SINE Alu -11 301 1 234 231 198 0 chr6 146907044 146907135 -42372419 + MER117 DNA MER1_type 14 122 -75 234 167 71 0 chr6 146907194 146907236 -42372318 - L2 LINE L2 -43 3270 3226 537 245 83 47 chr6 146907569 146907761 -42371793 - MLT1J LTR MaLR 0 511 313 200 290 220 0 chr6 146907834 146907934 -42371620 - MIR SINE MIR -56 206 85 2906 80 35 0 chr6 146907973 146908374 -42371180 - L1PA11 LINE L1 -8 6166 5752 2656 68 0 11 chr6 146908384 146908739 -42370815 - L1P4 LINE L1 -368 5806 5456 4866 227 98 19 chr6 146910503 146911885 -42367669 - L1MDa LINE L1 -5026 1514 24 2350 76 26 3 chr6 146912695 146912999 -42366555 - AluY SINE Alu 0 311 1 1865 131 25 0 chr6 146913035 146913317 -42366237 - AluSx SINE Alu -16 296 8 2417 66 26 0 chr6 146914853 146914973 -42364581 + AluY SINE Alu 1 116 -195 441 0 0 0 chr6 146914973 146915022 -42364532 + (CA)n Simple_repeat Simple_repeat 2 50 0 2417 66 26 0 chr6 146915022 146915204 -42364350 + AluY SINE Alu 116 311 0 185 339 0 0 chr6 146915458 146915523 -42364031 - L2 LINE L2 -49 3223 3159 2204 153 27 47 chr6 146915999 146916445 -42363109 + LTR23 LTR ERV1 1 437 0 1257 176 163 69 chr6 146916540 146916932 -42362622 - LTR8A LTR ERV1 0 727 299 418 160 64 21 chr6 146916945 146917039 -42362515 - LTR8 LTR ERV1 -593 98 1 1873 143 138 16 chr6 146917110 146917487 -42362067 - MSTA LTR MaLR 0 428 6 2270 168 39 5 chr6 146917541 146917953 -42361601 - MSTB LTR MaLR 0 426 1 241 175 0 70 chr6 146917981 146918038 -42361516 + L2 LINE L2 3215 3267 -5 23 0 0 0 chr6 146918230 146918253 -42361301 + AT_rich Low_complexity Low_complexity 1 23 0 191 246 105 0 chr6 146918853 146918910 -42360644 - MIR SINE MIR 0 262 200 27 29 0 0 chr6 146919548 146919582 -42359972 + AT_rich Low_complexity Low_complexity 1 34 0 330 222 0 0 chr6 146919998 146920088 -42359466 + CT-rich Low_complexity Low_complexity 3 92 0 3476 53 0 13 chr6 146920295 146920749 -42358805 + LTR7 LTR ERV1 1 448 -2 19035 90 62 42 chr6 146920751 146923976 -42355578 + HERVH LTR ERV1 1 3290 -4423 3221 100 10 6 chr6 146923966 146924466 -42355088 + HERVH LTR ERV1 3492 3993 -3720 * 4143 136 1 3 chr6 146924468 146925131 -42354423 + HERVH LTR ERV1 4488 5149 -2564 1147 113 88 10 chr6 146925132 146925336 -42354218 + HERVH LTR ERV1 5600 5819 -1894 2414 71 45 13 chr6 146925336 146925714 -42353840 + HERVH LTR ERV1 7324 7713 0 3726 38 0 2 chr6 146925714 146926163 -42353391 + LTR7 LTR ERV1 1 448 -2 488 178 0 0 chr6 146926381 146926454 -42353100 - FLAM_A SINE Alu -67 75 3 901 254 78 62 chr6 146926522 146927026 -42352528 + MLT1H LTR MaLR 38 549 0 1319 170 0 22 chr6 146927592 146927815 -42351739 + AluJo SINE Alu 79 296 -16 2284 100 10 0 chr6 146927820 146928120 -42351434 + AluSp SINE Alu 1 303 -10 2080 156 79 16 chr6 146928179 146928622 -42350932 + L1MB2 LINE L1 5686 6156 -15 522 92 0 11 chr6 146929095 146929182 -42350372 - L1MA7 LINE L1 -6 6285 6200 1192 85 18 6 chr6 146929505 146929670 -42349884 - AluSg/x SINE Alu -8 304 138 3840 231 75 61 chr6 146929777 146931508 -42348046 - L1MD2 LINE L1 0 6359 4584 1490 193 3 68 chr6 146931508 146931719 -42347835 - AluJb SINE Alu -10 302 115 1797 114 33 7 chr6 146931719 146932038 -42347516 + AluSx SINE Alu 3 328 0 1490 193 3 68 chr6 146932038 146932146 -42347408 - AluJb SINE Alu -197 115 2 3840 231 75 61 chr6 146932146 146932721 -42346833 - L1MD2 LINE L1 -1775 4584 4018 1467 179 82 24 chr6 146932917 146933247 -42346307 - MSTD LTR MaLR -47 349 1 294 306 9 9 chr6 146934484 146934608 -42344946 - MER63 DNA MER1_type 0 1062 713 1097 126 189 13 chr6 146934747 146934985 -42344569 + MSTA LTR MaLR 1 280 -148 2002 138 40 28 chr6 146934990 146935344 -42344210 + THE1B LTR MaLR 7 364 0 730 128 158 0 chr6 146935344 146935477 -42344077 + MSTA LTR MaLR 275 428 0 187 282 51 94 chr6 146935681 146935798 -42343756 + L2 LINE L2 3148 3259 -13 786 81 0 9 chr6 146936828 146936974 -42342580 + L1 LINE L1 5240 5379 -777 4369 217 90 7 chr6 146936998 146938062 -42341492 + L1PA13 LINE L1 5 1157 -5630 5582 105 30 32 chr6 146938065 146939795 -42339759 + L1PA13 LINE L1 4435 6159 -4 6147 100 10 5 chr6 146939795 146940735 -42338819 + L1MA1 LINE L1 5359 6302 0 204 233 0 0 chr6 146940741 146940784 -42338770 - L2 LINE L2 -25 3247 3205 287 275 37 9 chr6 146940953 146941062 -42338492 - MER117 DNA MER1_type -83 114 3 1190 319 69 31 chr6 146941134 146941834 -42337720 - L1MEd LINE L1 -5363 756 31 186 294 44 44 chr6 146942694 146942762 -42336792 - MIR SINE MIR -83 125 58 971 163 12 18 chr6 146942937 146943103 -42336451 + MER5A DNA MER1_type 1 165 -24 225 265 20 41 chr6 146943135 146943233 -42336321 - ORSL DNA AcHobo -12 263 168 1620 181 3 27 chr6 146943268 146943567 -42335987 + AluJo SINE Alu 10 301 -11 313 298 77 0 chr6 146944181 146944285 -42335269 - MIR SINE MIR -108 154 43 393 215 0 74 chr6 146945219 146945248 -42334306 - MER3 DNA MER1_type -1 2623 2593 2301 116 0 10 chr6 146945248 146945559 -42333995 + AluSq SINE Alu 1 308 -5 393 215 0 74 chr6 146945559 146945650 -42333904 - MER3 DNA MER1_type -31 2593 2512 240 239 26 8 chr6 146945651 146945768 -42333786 + (TA)n Simple_repeat Simple_repeat 1 119 0 701 199 178 4 chr6 146945809 146946050 -42333504 - MER3 DNA MER1_type 0 2518 2236 628 228 0 0 chr6 146946046 146946191 -42333363 - MER3 DNA MER1_type -79 130 33 * 1652 78 0 115 chr6 146946264 146946477 -42333077 - pTR5 LTR ERV1 -2046 392 227 2214 74 27 3 chr6 146946477 146946773 -42332781 - AluY SINE Alu -8 303 1 1652 78 0 115 chr6 146946773 146946881 -42332673 - pTR5 LTR ERV1 -2211 227 108 2053 115 14 7 chr6 146947355 146947650 -42331904 + AluSq SINE Alu 2 298 -15 691 204 8 0 chr6 146947872 146948004 -42331550 + FLAM_C SINE Alu 1 133 -10 653 241 64 40 chr6 146948179 146948503 -42331051 + MLT1I LTR MaLR 71 448 -2 744 275 39 14 chr6 146949799 146950006 -42329548 + MIR SINE MIR 51 262 0 2164 108 14 0 chr6 146950182 146950468 -42329086 - AluSx SINE Alu -22 290 1 2230 138 112 5 chr6 146950607 146950778 -42328776 + MSTB LTR MaLR 1 152 -274 212 0 36 0 chr6 146950778 146950806 -42328748 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2230 138 112 5 chr6 146950806 146951019 -42328535 + MSTB LTR MaLR 152 426 0 358 339 16 8 chr6 146951481 146951605 -42327949 + MIR3 SINE MIR 77 201 -7 532 282 149 0 chr6 146951642 146951816 -42327738 - L3 LINE CR1 -28 1549 1350 699 180 160 0 chr6 146951816 146951965 -42327589 - MLT2B1 LTR ERVL 0 520 348 3061 80 16 7 chr6 146951965 146952390 -42327164 - MER41A LTR ERV1 0 554 126 1742 193 11 35 chr6 146952390 146952763 -42326791 - LTR10B LTR ERV1 0 547 184 995 83 28 0 chr6 146952822 146952967 -42326587 - MER41A LTR ERV1 -405 149 1 851 225 133 38 chr6 146952969 146953284 -42326270 - MLT2B1 LTR ERVL -171 349 5 3447 131 42 3 chr6 146953331 146953910 -42325644 + MER4B LTR ERV1 3 603 -7 3146 150 26 2 chr6 146954319 146954852 -42324702 - MER41C LTR ERV1 -8 546 1 191 289 0 0 chr6 146955434 146955472 -42324082 + MIR SINE MIR 114 151 -111 202 234 0 0 chr6 146956759 146956806 -42322748 + A-rich Low_complexity Low_complexity 1 47 0 2906 0 0 0 chr6 146957187 146957498 -42322056 + AluYa5 SINE Alu 1 311 0 186 174 0 0 chr6 146958534 146958580 -42320974 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1790 192 87 12 chr6 146959104 146959531 -42320023 - MLT1C LTR MaLR -2 465 7 191 318 71 0 chr6 146959854 146959939 -42319615 + L2 LINE L2 89 179 -3135 303 382 89 0 chr6 146960459 146960582 -42318972 + L2 LINE L2 3133 3266 -6 201 237 0 0 chr6 146961528 146961566 -42317988 + (TG)n Simple_repeat Simple_repeat 1 38 0 348 184 40 0 chr6 146961566 146961642 -42317912 - MER116 DNA Mariner -1 79 1 2036 146 3 7 chr6 146962230 146962532 -42317022 + AluSx SINE Alu 1 301 -11 22 80 0 0 chr6 146962781 146962831 -42316723 + AT_rich Low_complexity Low_complexity 1 50 0 1514 247 72 33 chr6 146963251 146964076 -42315478 - L1ME LINE L1 -4927 1153 302 460 279 14 14 chr6 146964088 146964228 -42315326 - L1ME LINE L1 -5847 223 84 246 229 31 0 chr6 146964459 146964555 -42314999 + L1ME3A LINE L1 5301 5399 -960 360 311 92 21 chr6 146964652 146965031 -42314523 + L1ME3A LINE L1 5521 5926 -244 2293 109 3 6 chr6 146965146 146965457 -42314097 - AluSq SINE Alu -3 310 1 635 291 25 62 chr6 146965534 146965847 -42313707 - L1MC5 LINE L1 -903 6905 6610 243 0 0 0 chr6 146965847 146965874 -42313680 + (TG)n Simple_repeat Simple_repeat 2 28 0 635 291 25 62 chr6 146965874 146965993 -42313561 - L1MC5 LINE L1 -1198 6610 6488 315 296 154 6 chr6 146966409 146966578 -42312976 - HAL1b LINE L1 -613 735 542 1117 90 24 0 chr6 146966581 146966748 -42312806 + L1MA7 LINE L1 5690 5860 -431 457 333 59 59 chr6 146966777 146967379 -42312175 - L1M4c LINE L1 -939 1804 1252 5070 146 24 8 chr6 146967784 146968720 -42310834 - L1MA8 LINE L1 0 6291 5341 23 0 0 0 chr6 146971049 146971072 -42308482 + AT_rich Low_complexity Low_complexity 1 23 0 24 24 0 24 chr6 146971208 146971222 -42308332 + AT_rich Low_complexity Low_complexity 1 14 -27 189 0 0 0 chr6 146971222 146971243 -42308311 + (CA)n Simple_repeat Simple_repeat 2 22 0 24 24 0 24 chr6 146971243 146971270 -42308284 + AT_rich Low_complexity Low_complexity 14 41 0 183 80 0 0 chr6 146973696 146973721 -42305833 + (A)n Simple_repeat Simple_repeat 1 25 0 256 346 39 0 chr6 146978198 146978302 -42301252 + MIR SINE MIR 30 137 -71 23 0 0 0 chr6 146978535 146978558 -42300996 + AT_rich Low_complexity Low_complexity 1 23 0 1824 136 0 67 chr6 146978602 146978918 -42300636 - AluJb SINE Alu -17 295 1 289 276 93 41 chr6 146979828 146979992 -42299562 - MIR SINE MIR -50 212 40 515 226 32 105 chr6 146982204 146982394 -42297160 + MIR SINE MIR 82 257 -5 195 162 0 0 chr6 146983009 146983046 -42296508 + GA-rich Low_complexity Low_complexity 1 37 0 275 132 13 40 chr6 146983464 146983540 -42296014 + (TA)n Simple_repeat Simple_repeat 2 75 0 1207 121 105 8 chr6 146983713 146983952 -42295602 + MSTA LTR MaLR 1 262 -166 949 164 116 14 chr6 146984059 146984266 -42295288 + MSTA LTR MaLR 201 428 0 2458 50 0 3 chr6 146984304 146984603 -42294951 - AluY SINE Alu -13 298 1 665 271 88 0 chr6 146985083 146985275 -42294279 - MER3 DNA MER1_type 0 209 1 313 311 193 66 chr6 146985620 146986660 -42292894 + L2 LINE L2 1606 2777 -537 1730 181 20 7 chr6 146986847 146987139 -42292415 - AluJo SINE Alu -16 296 1 268 111 32 0 chr6 146987362 146987425 -42292129 + (TA)n Simple_repeat Simple_repeat 1 65 0 24 53 0 0 chr6 146988307 146988345 -42291209 + AT_rich Low_complexity Low_complexity 1 38 0 183 375 98 9 chr6 146988672 146988784 -42290770 - L2 LINE L2 -13 3300 3179 182 287 156 49 chr6 146988722 146988844 -42290710 - MER5B DNA MER1_type -41 137 3 * 225 0 0 0 chr6 146989354 146989379 -42290175 + (CA)n Simple_repeat Simple_repeat 2 26 0 225 65 0 0 chr6 146989775 146989806 -42289748 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 383 110 134 0 chr6 146989858 146989940 -42289614 - L1MA4A LINE L1 -3 6300 6208 1117 141 15 10 chr6 146990034 146990240 -42289314 - L1MA4A LINE L1 -98 6205 5999 433 374 167 0 chr6 146990285 146990531 -42289023 + L2 LINE L2 2983 3269 -3 231 36 0 0 chr6 146991745 146991773 -42287781 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 2273 113 0 0 chr6 146991939 146992239 -42287315 + AluSx SINE Alu 1 300 -12 499 233 25 0 chr6 146992260 146992380 -42287174 + MER3 DNA MER1_type 1 123 -86 424 320 85 47 chr6 146992402 146992743 -42286811 - MLT1K LTR MaLR -148 440 87 894 206 45 40 chr6 146992756 146992979 -42286575 - MER58A DNA MER1_type 0 224 1 765 306 130 23 chr6 146993359 146993698 -42285856 + L2 LINE L2 2377 2775 -539 2155 125 0 0 chr6 146993698 146993994 -42285560 - AluSx SINE Alu -16 296 1 765 306 130 23 chr6 146993994 146994092 -42285462 + L2 LINE L2 2775 2861 -453 878 214 20 0 chr6 146994146 146994347 -42285207 + MER3 DNA MER1_type 1 205 -4 183 162 0 0 chr6 146994529 146994566 -42284988 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 345 286 11 0 chr6 146995577 146995668 -42283886 - L1MEd LINE L1 -5465 951 860 2051 165 22 67 chr6 146995707 146995900 -42283654 + L1MCa LINE L1 2005 2205 -4372 2296 108 0 0 chr6 146995900 146996205 -42283349 + AluSg SINE Alu 1 305 -5 2051 165 22 67 chr6 146996205 146996513 -42283041 + L1MCa LINE L1 2205 2506 -4071 499 233 23 8 chr6 146996513 146996642 -42282912 + FLAM_A SINE Alu 2 132 -1 2051 165 22 67 chr6 146996642 146996727 -42282827 + L1MCa LINE L1 2506 2593 -3984 738 217 33 0 chr6 146996696 146996848 -42282706 - L1MEd LINE L1 -5860 566 410 * 1025 232 137 23 chr6 146996985 146997381 -42282173 - L1MC4a LINE L1 -853 7028 6601 800 269 40 97 chr6 146997389 146997765 -42281789 + MER92A LTR ERV1 1 579 -57 2298 170 7 38 chr6 146997765 146998213 -42281341 - Tigger2a DNA MER2_type 0 434 1 800 269 40 97 chr6 146998213 146998236 -42281318 + MER92A LTR ERV1 579 602 -34 201 94 0 0 chr6 147001026 147001058 -42278496 + (TA)n Simple_repeat Simple_repeat 1 32 0 322 250 22 11 chr6 147001058 147001150 -42278404 - L1MC4 LINE L1 -1333 6709 6617 321 234 0 53 chr6 147001075 147001169 -42278385 + L1MC4 LINE L1 6615 6703 -1339 * 21 36 0 0 chr6 147001516 147001544 -42278010 + AT_rich Low_complexity Low_complexity 1 28 0 3140 63 2 0 chr6 147001668 147002067 -42277487 + L1PA8 LINE L1 5768 6167 -5 537 204 116 6 chr6 147002098 147002275 -42277279 - L1ME3 LINE L1 -128 6040 5866 2601 158 59 40 chr6 147002297 147002571 -42276983 - MER4E LTR ERV1 -36 743 475 2432 82 0 3 chr6 147002571 147002876 -42276678 + AluSx SINE Alu 1 304 -8 2601 158 59 40 chr6 147002876 147003146 -42276408 - MER4E LTR ERV1 -304 475 189 385 226 155 18 chr6 147003154 147003322 -42276232 - L1ME3 LINE L1 -342 5820 5630 205 236 146 0 chr6 147008006 147008061 -42271493 - L2 LINE L2 -6 3266 3204 257 307 139 19 chr6 147008147 147008362 -42271192 - MIR SINE MIR 0 262 22 2204 129 0 0 chr6 147008507 147008801 -42270753 + AluSx SINE Alu 1 294 -18 23 0 0 0 chr6 147010072 147010095 -42269459 + AT_rich Low_complexity Low_complexity 1 23 0 9330 183 13 12 chr6 147010095 147010455 -42269099 - L1PB1 LINE L1 -1 6866 6508 991 85 7 7 chr6 147010455 147010608 -42268946 + (TA)n Simple_repeat Simple_repeat 1 153 0 9330 183 13 12 chr6 147010608 147013337 -42266217 - L1PB1 LINE L1 -359 6508 3774 5883 184 180 7 chr6 147013450 147014987 -42264567 - L1PB1 LINE L1 -4777 2086 284 781 254 100 71 chr6 147014998 147015447 -42264107 + MLT1H LTR MaLR 86 547 -2 750 281 80 6 chr6 147015447 147015796 -42263758 + L1ME3A LINE L1 5760 6134 -36 370 303 107 26 chr6 147015868 147016297 -42263257 + L1ME4a LINE L1 5377 5840 -281 24 53 0 0 chr6 147016518 147016556 -42262998 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr6 147017285 147017306 -42262248 + AT_rich Low_complexity Low_complexity 1 21 0 423 280 20 0 chr6 147017654 147017754 -42261800 - MIR SINE MIR -114 148 47 280 381 22 7 chr6 147017907 147018046 -42261508 + MIR SINE MIR 3 143 -119 213 279 0 0 chr6 147018062 147018105 -42261449 + L2 LINE L2 3258 3300 -13 1001 209 193 12 chr6 147018703 147018957 -42260597 - AluJo SINE Alu -9 303 4 2691 35 0 0 chr6 147019061 147019372 -42260182 - AluY SINE Alu 0 311 1 563 146 10 10 chr6 147019868 147019964 -42259590 + MIR SINE MIR 92 187 -75 225 357 71 32 chr6 147020264 147020390 -42259164 + L2 LINE L2 3123 3253 -19 200 207 9 216 chr6 147021176 147021292 -42258262 - MER5A DNA MER1_type 0 189 98 21 57 0 0 chr6 147021795 147021830 -42257724 + AT_rich Low_complexity Low_complexity 1 35 0 3132 137 54 0 chr6 147022462 147022652 -42256902 - MER41C LTR ERV1 -7 547 369 222 37 0 0 chr6 147022652 147022679 -42256875 + (TG)n Simple_repeat Simple_repeat 2 28 0 3132 137 54 0 chr6 147022679 147023007 -42256547 - MER41C LTR ERV1 -185 369 1 355 235 0 0 chr6 147023024 147023092 -42256462 + MER69 DNA AcHobo 8 75 -2451 878 228 164 17 chr6 147023551 147023898 -42255656 + MER69 DNA AcHobo 2085 2482 -44 3309 227 45 45 chr6 147024024 147025068 -42254486 - L1M4 LINE L1 -1288 4858 3815 2160 141 0 0 chr6 147025077 147025382 -42254172 - AluSx SINE Alu -7 305 1 685 234 63 87 chr6 147025696 147025948 -42253606 + MIR SINE MIR 3 248 -14 2269 222 54 0 chr6 147025961 147026443 -42253111 + MER67D LTR ERV1 2 509 -5 251 269 0 0 chr6 147028686 147028738 -42250816 + L2 LINE L2 3221 3272 0 263 258 113 57 chr6 147028886 147029045 -42250509 - MLT1K LTR MaLR -326 262 95 338 266 139 59 chr6 147029715 147029952 -42249602 - L1MDa LINE L1 -3699 2430 2175 336 264 130 30 chr6 147030534 147030666 -42248888 - L1MDa LINE L1 -4608 1521 1404 2175 117 0 10 chr6 147030666 147030973 -42248581 + AluSx SINE Alu 1 304 -8 336 264 130 30 chr6 147030973 147031139 -42248415 - L1MDa LINE L1 -4725 1404 1193 1504 191 0 0 chr6 147031150 147031401 -42248153 - AluJo SINE Alu -61 251 1 665 201 0 52 chr6 147031410 147031544 -42248010 - FLAM_C SINE Alu -6 127 1 633 256 102 24 chr6 147031560 147031971 -42247583 - L1MDa LINE L1 -4919 1200 758 352 316 25 6 chr6 147032232 147032390 -42247164 - L1MDa LINE L1 -5956 163 3 490 279 127 12 chr6 147032391 147032635 -42246919 - L1M4 LINE L1 -2697 3449 3178 2705 198 57 21 chr6 147032715 147033205 -42246349 + L1MDa LINE L1 1312 1838 -4702 2139 125 7 0 chr6 147033205 147033509 -42246045 - AluSx SINE Alu -6 306 1 2705 198 57 21 chr6 147033509 147033734 -42245820 + L1MDa LINE L1 1838 2053 -4487 * 3631 254 44 17 chr6 147033733 147035199 -42244355 + L1MDa LINE L1 3719 5254 -1286 4437 186 49 53 chr6 147035314 147036362 -42243192 + L1MD1 LINE L1 4233 5266 -976 210 91 0 0 chr6 147036362 147036395 -42243159 + (CA)n Simple_repeat Simple_repeat 2 34 0 4437 186 49 53 chr6 147036395 147037368 -42242186 + L1MD1 LINE L1 5266 6241 -1 257 276 38 67 chr6 147039233 147039338 -42240216 + L2 LINE L2 3193 3294 -19 225 94 0 0 chr6 147039371 147039403 -42240151 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 237 253 0 67 chr6 147039652 147039727 -42239827 + MLT2E LTR ERVL 31 100 -528 23 0 0 0 chr6 147041667 147041690 -42237864 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 147043503 147043525 -42236029 + AT_rich Low_complexity Low_complexity 1 22 0 2213 105 0 16 chr6 147044139 147044443 -42235111 - AluSg SINE Alu -11 299 1 324 0 0 0 chr6 147045416 147045452 -42234102 + (TG)n Simple_repeat Simple_repeat 2 37 0 2558 107 3 0 chr6 147045768 147046141 -42233413 + L1PA13 LINE L1 5787 6160 -3 812 142 0 16 chr6 147046155 147046282 -42233272 + AluJb SINE Alu 1 125 -187 1988 127 3 3 chr6 147046295 147046579 -42232975 + AluSx SINE Alu 1 284 -28 248 330 97 5 chr6 147046647 147046832 -42232722 + L1ME LINE L1 5618 5819 -302 1748 322 48 10 chr6 147048757 147049794 -42229760 - ERVL LTR ERVL -4343 1421 273 691 188 78 23 chr6 147050031 147050249 -42229305 - L1M4 LINE L1 -3733 2413 2184 319 184 26 7 chr6 147050258 147050410 -42229144 + (TA)n Simple_repeat Simple_repeat 1 155 0 404 301 27 0 chr6 147050665 147050811 -42228743 + L1M4 LINE L1 2422 2571 -3575 * 512 250 6 12 chr6 147050798 147050962 -42228592 + L1M4 LINE L1 4563 4725 -1421 2197 98 7 0 chr6 147050982 147051279 -42228275 + AluY SINE Alu 1 299 -12 2424 57 0 0 chr6 147051279 147051576 -42227978 + AluY SINE Alu 1 297 -14 1929 89 97 0 chr6 147052633 147052902 -42226652 + AluSg SINE Alu 1 295 -15 300 363 56 28 chr6 147053341 147053520 -42226034 - L1ME LINE L1 -5885 185 2 245 184 53 0 chr6 147053559 147053635 -42225919 - L1M4 LINE L1 -3181 2965 2886 1590 170 50 0 chr6 147054377 147054654 -42224900 + AluJo SINE Alu 1 291 -21 5702 245 120 72 chr6 147056241 147057881 -42221673 + L2 LINE L2 355 2268 -1045 287 337 0 0 chr6 147057881 147057964 -42221590 - MER58 DNA MER1_type -2142 278 196 5702 245 120 72 chr6 147057964 147059063 -42220491 + L2 LINE L2 2268 3313 0 346 291 0 27 chr6 147060471 147060581 -42218973 + MIR SINE MIR 156 262 0 1953 145 7 3 chr6 147060991 147061287 -42218267 + AluSx SINE Alu 1 297 -15 27 73 0 0 chr6 147061818 147061873 -42217681 + AT_rich Low_complexity Low_complexity 1 55 0 201 121 0 0 chr6 147062165 147062198 -42217356 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 33 0 0 chr6 147062252 147062282 -42217272 + AT_rich Low_complexity Low_complexity 1 30 0 1888 156 0 10 chr6 147064311 147064619 -42214935 + AluSx SINE Alu 1 305 -7 365 260 0 0 chr6 147064794 147064871 -42214683 + MER2 DNA MER2_type 268 344 -1 1817 174 7 0 chr6 147065216 147065520 -42214034 + AluJb SINE Alu 1 306 -6 1917 113 0 0 chr6 147066394 147066651 -42212903 - AluSg SINE Alu -14 296 40 914 254 129 40 chr6 147067319 147067870 -42211684 + L1MC4 LINE L1 7131 7730 -312 457 309 24 69 chr6 147068686 147068974 -42210580 + L1M4 LINE L1 4882 5156 -990 569 95 0 0 chr6 147069388 147069472 -42210082 + L1PA7 LINE L1 6071 6154 0 440 207 23 0 chr6 147069885 147069972 -42209582 - MER57A-int LTR ERV1 -7448 89 1 2089 166 33 3 chr6 147069972 147070363 -42209191 - MER57A LTR ERV1 0 403 1 523 280 134 41 chr6 147070500 147070918 -42208636 - LTR16A1 LTR ERVL 0 457 1 9449 248 56 29 chr6 147071112 147073628 -42205926 + L1MC3 LINE L1 1823 4269 -2399 1404 278 30 11 chr6 147073628 147074063 -42205491 + LTR47B LTR ERVL 1 443 0 9449 248 56 29 chr6 147074063 147075024 -42204530 + L1MC3 LINE L1 4269 5507 -1161 776 209 6 55 chr6 147075024 147075206 -42204348 + FAM SINE Alu 1 173 -2 9449 248 56 29 chr6 147075206 147075622 -42203932 + L1MC3 LINE L1 5507 5910 -758 2458 233 50 24 chr6 147076208 147076911 -42202643 + L1MC3 LINE L1 5880 6600 -1465 497 306 137 45 chr6 147077021 147077798 -42201756 + L2 LINE L2 2436 3302 -11 201 209 23 0 chr6 147077800 147077843 -42201711 + GA-rich Low_complexity Low_complexity 1 44 0 816 126 14 0 chr6 147077856 147077999 -42201555 + GA-rich Low_complexity Low_complexity 2 146 0 2094 117 3 0 chr6 147078077 147078367 -42201187 - AluSx SINE Alu -21 291 1 21 57 0 0 chr6 147078927 147078962 -42200592 + AT_rich Low_complexity Low_complexity 1 35 0 254 264 0 0 chr6 147081008 147081061 -42198493 - L2 LINE L2 -19 3253 3201 661 156 0 3 chr6 147082103 147082337 -42197217 + AluJb SINE Alu 1 303 -9 205 304 0 0 chr6 147082412 147082468 -42197086 - L2 LINE L2 -954 2360 2305 1183 246 89 34 chr6 147082702 147083142 -42196412 - L1M4 LINE L1 -2057 4089 3626 691 62 0 125 chr6 147083142 147083270 -42196284 + AluSp/q SINE Alu 202 313 0 725 285 80 6 chr6 147083281 147083593 -42195961 - L1M4 LINE L1 -2520 3626 3292 604 38 0 25 chr6 147084358 147084437 -42195117 + L1PA8 LINE L1 6089 6165 -7 258 296 0 37 chr6 147086617 147086698 -42192856 - MIR SINE MIR -106 102 25 342 286 152 13 chr6 147086856 147087080 -42192474 + MIR SINE MIR 8 262 0 208 346 79 0 chr6 147087799 147087926 -42191628 - MIR SINE MIR -122 140 4 324 301 111 35 chr6 147088143 147088342 -42191212 + L1ME LINE L1 863 1076 -5855 239 67 0 0 chr6 147088461 147088491 -42191063 + LTR6A LTR ERV1 73 102 -462 468 276 78 22 chr6 147088930 147089263 -42190291 + L1ME LINE L1 1232 1536 -4887 2375 100 0 0 chr6 147089264 147089574 -42189980 + AluSx SINE Alu 1 310 -2 402 279 50 43 chr6 147090801 147090962 -42188592 - MIR SINE MIR -50 212 51 1210 212 35 23 chr6 147091430 147091809 -42187745 + LTR40b LTR ERVL 1 429 -33 180 0 0 0 chr6 147091871 147091891 -42187663 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 554 291 121 5 chr6 147092852 147093051 -42186503 - MIR SINE MIR -1 261 40 185 351 0 0 chr6 147093506 147093580 -42185974 + L2 LINE L2 3220 3293 -20 222 86 0 0 chr6 147093981 147094001 -42185553 + (TG)n Simple_repeat Simple_repeat 2 24 -12 2287 89 3 0 chr6 147094001 147094294 -42185260 - AluSg SINE Alu -16 294 1 222 86 0 0 chr6 147094294 147094308 -42185246 + (TG)n Simple_repeat Simple_repeat 23 36 0 1736 168 7 17 chr6 147094347 147094645 -42184909 - AluJo SINE Alu -16 296 2 1753 162 56 35 chr6 147095036 147095375 -42184179 - MER7A DNA MER2_type -2 344 1 392 229 42 59 chr6 147095569 147095687 -42183867 - L2 LINE L2 0 3272 3157 2076 128 68 70 chr6 147098126 147098555 -42180999 - MSTC LTR MaLR 0 428 1 2205 104 0 0 chr6 147100251 147100533 -42179021 + AluSg SINE Alu 1 283 -22 186 71 0 0 chr6 147100533 147100561 -42178993 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 717 269 47 14 chr6 147100574 147100786 -42178768 + MIR SINE MIR 1 219 -43 387 207 5 42 chr6 147100805 147100915 -42178639 - FLAM_A SINE Alu -1 132 43 197 227 45 0 chr6 147101040 147101084 -42178470 - L2 LINE L2 0 3313 3268 180 0 0 0 chr6 147101716 147101736 -42177818 + (A)n Simple_repeat Simple_repeat 1 20 0 863 214 0 12 chr6 147102213 147102381 -42177173 - FRAM SINE Alu 0 166 1 23 0 0 0 chr6 147102390 147102413 -42177141 + AT_rich Low_complexity Low_complexity 1 23 0 403 285 45 34 chr6 147102459 147102638 -42176916 - L2 LINE L2 -659 2655 2475 7420 41 0 3 chr6 147102714 147103752 -42175802 - L1PA6 LINE L1 0 6154 5118 235 273 318 0 chr6 147104183 147104315 -42175239 - MER5A DNA MER1_type -3 186 13 234 0 0 0 chr6 147104385 147104411 -42175143 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2255 104 0 3 chr6 147104411 147104705 -42174849 - AluSq SINE Alu -20 293 1 342 0 0 0 chr6 147105742 147105780 -42173774 + (TA)n Simple_repeat Simple_repeat 2 39 0 1708 79 0 67 chr6 147105780 147106034 -42173520 - AluSq SINE Alu -3 310 74 2236 104 3 0 chr6 147106079 147106378 -42173176 + AluSq SINE Alu 1 300 -13 496 283 108 31 chr6 147106502 147107099 -42172455 - L1ME3A LINE L1 -244 5926 5279 1749 248 81 33 chr6 147107305 147108282 -42171272 + L1ME LINE L1 84 1153 -4927 22 80 0 0 chr6 147108702 147108752 -42170802 + AT_rich Low_complexity Low_complexity 1 50 0 1977 146 3 7 chr6 147109000 147109302 -42170252 - AluSx SINE Alu -11 301 1 355 184 40 0 chr6 147109890 147109966 -42169588 + MER116 DNA Mariner 1 79 -1 201 237 0 0 chr6 147109966 147110004 -42169550 + (CA)n Simple_repeat Simple_repeat 1 38 0 311 382 89 0 chr6 147110950 147111073 -42168481 - L2 LINE L2 -6 3266 3133 184 322 69 0 chr6 147111593 147111680 -42167874 - L2 LINE L2 -3135 179 87 1928 192 87 12 chr6 147112001 147112428 -42167126 + MLT1C LTR MaLR 7 465 -2 186 174 0 0 chr6 147112952 147112998 -42166556 + (CATA)n Simple_repeat Simple_repeat 2 47 0 191 289 0 0 chr6 147115722 147115760 -42163794 - MIR SINE MIR -111 151 114 3299 146 25 15 chr6 147116342 147116890 -42162664 + MER41C LTR ERV1 1 554 0 3643 131 42 3 chr6 147117290 147117869 -42161685 - MER4B LTR ERV1 -7 603 3 965 222 133 38 chr6 147117916 147118231 -42161323 + MLT2B1 LTR ERVL 5 349 -171 1039 83 28 0 chr6 147118233 147118378 -42161176 + MER41A LTR ERV1 1 149 -405 1851 193 11 35 chr6 147118437 147118810 -42160744 + LTR10B LTR ERV1 184 547 0 3187 82 16 7 chr6 147118810 147119235 -42160319 + MER41A LTR ERV1 126 554 0 764 173 160 0 chr6 147119235 147119384 -42160170 + MLT2B1 LTR ERVL 348 520 0 524 282 149 0 chr6 147119384 147119558 -42159996 + L3 LINE CR1 1350 1549 -28 351 371 8 0 chr6 147119595 147119719 -42159835 - MIR3 SINE MIR -7 201 77 2218 138 112 5 chr6 147120181 147120394 -42159160 - MSTB LTR MaLR 0 426 237 212 0 36 0 chr6 147120394 147120422 -42159132 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2218 138 112 5 chr6 147120422 147120593 -42158961 - MSTB LTR MaLR -189 237 1 2152 108 14 0 chr6 147120732 147121018 -42158536 + AluSx SINE Alu 1 290 -22 739 275 39 14 chr6 147121194 147121401 -42158153 - MIR SINE MIR 0 262 51 376 288 103 37 chr6 147122519 147122786 -42156768 - MLT1J2 LTR MaLR -31 419 76 2327 74 0 3 chr6 147123245 147123576 -42155978 - AluY SINE Alu 0 331 2 1587 217 62 8 chr6 147123836 147124205 -42155349 + MSTD LTR MaLR 1 389 -7 3612 256 78 27 chr6 147124273 147124512 -42155042 - L2 LINE L2 -28 3285 3060 2028 131 0 0 chr6 147124512 147124794 -42154760 - AluSx SINE Alu -30 282 1 3612 256 78 27 chr6 147124794 147125941 -42153613 - L2 LINE L2 -253 3060 1821 212 325 170 16 chr6 147125964 147126152 -42153402 - L2 LINE L2 -1666 1648 1432 241 282 64 0 chr6 147126201 147126279 -42153275 - L2 LINE L2 -2359 955 873 207 114 0 0 chr6 147126748 147126783 -42152771 + (T)n Simple_repeat Simple_repeat 1 35 0 228 285 67 55 chr6 147127642 147127807 -42151747 - L1ME4a LINE L1 0 6121 5955 322 225 71 104 chr6 147127843 147128025 -42151529 - L1ME4a LINE L1 -259 5862 5687 212 278 100 33 chr6 147128033 147128123 -42151431 + MIR SINE MIR 157 252 -10 265 261 45 23 chr6 147128204 147128292 -42151262 - L1ME4a LINE L1 -528 5593 5504 1877 261 117 35 chr6 147128302 147129378 -42150176 - L1ME3A LINE L1 -5 6165 4987 2121 190 7 3 chr6 147129641 147130047 -42149507 - L1MB3 LINE L1 -124 6059 5653 240 286 0 0 chr6 147130445 147130529 -42149025 + (TA)n Simple_repeat Simple_repeat 2 85 0 308 253 22 44 chr6 147130530 147130621 -42148933 + L1MC4 LINE L1 6615 6703 -1339 242 248 76 29 chr6 147130639 147130744 -42148810 + L1MC4 LINE L1 6614 6723 -1319 544 291 92 40 chr6 147130827 147131373 -42148181 - L1MC4 LINE L1 -1951 5857 5284 757 292 85 92 chr6 147131400 147132648 -42146906 - L1MC4 LINE L1 -881 5265 4027 399 264 19 9 chr6 147132799 147132905 -42146649 + MIR SINE MIR 48 154 -108 227 209 0 0 chr6 147134089 147134132 -42145422 + L2 LINE L2 3271 3313 0 261 0 0 0 chr6 147134754 147134783 -42144771 + (TG)n Simple_repeat Simple_repeat 2 30 0 2139 115 0 0 chr6 147135695 147136008 -42143546 - AluSc SINE Alu 0 313 1 180 0 0 0 chr6 147136019 147136039 -42143515 + (TTG)n Simple_repeat Simple_repeat 2 21 0 23 54 0 0 chr6 147136246 147136283 -42143271 + AT_rich Low_complexity Low_complexity 1 37 0 207 321 133 57 chr6 147138674 147138989 -42140565 - L3b LINE CR1 -17 1566 1228 4415 86 9 5 chr6 147139078 147139707 -42139847 + L1PA10 LINE L1 5534 6165 -3 744 258 58 50 chr6 147139725 147139965 -42139589 - MIR SINE MIR 0 262 21 201 74 0 0 chr6 147140159 147140186 -42139368 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 27 81 0 0 chr6 147141844 147141906 -42137648 + AT_rich Low_complexity Low_complexity 1 62 0 185 289 96 24 chr6 147142057 147142140 -42137414 + MIR3 SINE MIR 15 103 -105 1478 69 5 30 chr6 147142625 147142827 -42136727 - MER107 DNA MER1_type 0 197 1 4500 102 25 6 chr6 147143341 147144007 -42135547 + L1PA16 LINE L1 5479 6157 -9 1927 129 28 3 chr6 147145025 147145311 -42134243 + AluSx SINE Alu 1 293 -19 406 151 121 33 chr6 147146171 147146204 -42133350 - L1P4 LINE L1 -652 5522 5493 657 48 24 79 chr6 147146204 147146330 -42133224 - L1MB3 LINE L1 -1 6182 6064 406 151 121 33 chr6 147146330 147146408 -42133146 - L1P4 LINE L1 -681 5493 5415 1479 159 0 4 chr6 147146413 147146658 -42132896 - L1MB4 LINE L1 -65 6115 5872 3057 157 17 27 chr6 147146796 147147053 -42132501 - L1MB4 LINE L1 -314 5866 5608 2117 111 0 17 chr6 147147053 147147350 -42132204 - AluSc SINE Alu -16 293 2 3057 157 17 27 chr6 147147350 147147677 -42131877 - L1MB4 LINE L1 -572 5608 5288 405 286 131 6 chr6 147148506 147148681 -42130873 + L2 LINE L2 3115 3311 -2 811 215 45 34 chr6 147149995 147150099 -42129455 - Charlie1b DNA MER1_type -2305 456 355 2264 95 3 0 chr6 147150099 147150395 -42129159 + AluSp SINE Alu 1 297 -16 811 215 45 34 chr6 147150395 147150686 -42128868 - Charlie1b DNA MER1_type -2406 355 8 452 285 66 0 chr6 147150884 147151021 -42128533 + MIR SINE MIR 107 252 -10 378 0 0 0 chr6 147151825 147151867 -42127687 + (TA)n Simple_repeat Simple_repeat 2 43 0 858 102 34 0 chr6 147152225 147152372 -42127182 + GA-rich Low_complexity Low_complexity 3 154 0 337 125 0 0 chr6 147152376 147152424 -42127130 + (GGGA)n Simple_repeat Simple_repeat 1 48 0 305 111 0 0 chr6 147152752 147152797 -42126757 + MADE1 DNA Mariner 1 45 -35 549 276 126 7 chr6 147152967 147153260 -42126294 - L1ME4a LINE L1 -8 6113 5786 823 223 52 43 chr6 147153275 147153508 -42126046 + MIR SINE MIR 4 238 -24 268 261 54 9 chr6 147153544 147153655 -42125899 - L1ME4a LINE L1 -378 5743 5628 417 288 70 49 chr6 147154167 147154410 -42125144 - L1ME4a LINE L1 -1170 4976 4729 255 246 46 0 chr6 147154537 147154602 -42124952 + MLT1J LTR MaLR 134 201 -310 2255 104 3 0 chr6 147155493 147155790 -42123764 + AluSc SINE Alu 1 298 -11 1432 161 36 0 chr6 147155808 147156057 -42123497 - Tigger2 DNA MER2_type 0 2718 2461 2266 157 67 3 chr6 147156060 147156449 -42123105 + MSTB LTR MaLR 1 414 -12 3974 168 42 0 chr6 147156516 147157230 -42122324 - Tigger2 DNA MER2_type -1974 744 1 532 335 88 22 chr6 147157946 147158439 -42121115 - L2 LINE L2 -110 3203 2628 424 226 252 0 chr6 147159521 147159636 -42119918 - MER63 DNA MER1_type -292 770 1 291 54 0 0 chr6 147160122 147160159 -42119395 + (TA)n Simple_repeat Simple_repeat 2 38 0 2111 135 38 0 chr6 147160188 147160535 -42119019 + L1PB4 LINE L1 5789 6148 -8 198 0 0 0 chr6 147162562 147162584 -42116970 + (T)n Simple_repeat Simple_repeat 1 22 0 185 327 18 0 chr6 147162727 147162782 -42116772 - L2 LINE L2 -8 3264 3209 1259 231 21 49 chr6 147162817 147163203 -42116351 + L1 LINE L1 3923 4297 -1849 2294 108 0 0 chr6 147163309 147163605 -42115949 + AluSg SINE Alu 3 298 -12 483 204 48 152 chr6 147163962 147164055 -42115499 - MER3 DNA MER1_type -3 206 105 2219 114 0 3 chr6 147164055 147164352 -42115202 - AluSc SINE Alu -11 298 3 483 204 48 152 chr6 147164352 147164488 -42115066 - MER3 DNA MER1_type -104 105 1 376 268 41 27 chr6 147164699 147164837 -42114717 - L1MC/D LINE L1 -442 5679 5540 603 283 46 62 chr6 147165043 147165283 -42114271 - MIR SINE MIR -26 236 1 1767 201 99 23 chr6 147165323 147165424 -42114130 + MLT1C LTR MaLR 3 95 -372 15602 116 20 10 chr6 147165424 147167818 -42111736 + Tigger1 DNA MER2_type 1 2418 0 1767 201 99 23 chr6 147167818 147168148 -42111406 + MLT1C LTR MaLR 95 467 0 1813 176 3 10 chr6 147168756 147169052 -42110502 - AluJb SINE Alu -17 295 2 233 329 135 22 chr6 147169315 147169537 -42110017 - MIR SINE MIR -14 248 2 1201 171 8 17 chr6 147169685 147169925 -42109629 + MER33 DNA MER1_type 19 256 -68 1419 162 7 14 chr6 147169957 147170235 -42109319 - L1MA4 LINE L1 -6 6294 6019 4294 133 13 6 chr6 147170235 147170929 -42108625 + L1MA4 LINE L1 5272 5970 -330 432 167 12 0 chr6 147170933 147171017 -42108537 + MER33 DNA MER1_type 279 363 0 1028 261 71 10 chr6 147171250 147171561 -42107993 + MLT1H LTR MaLR 1 330 -219 1634 216 24 80 chr6 147171562 147172062 -42107492 - MLT1D LTR MaLR -1 504 33 282 143 0 0 chr6 147172062 147172111 -42107443 + (TG)n Simple_repeat Simple_repeat 2 50 0 358 236 255 0 chr6 147172145 147172251 -42107303 + MLT1H LTR MaLR 325 457 -92 24 32 0 0 chr6 147172437 147172468 -42107086 + AT_rich Low_complexity Low_complexity 1 31 0 354 45 0 0 chr6 147173229 147173273 -42106281 + (TG)n Simple_repeat Simple_repeat 2 45 0 196 298 298 11 chr6 147174223 147174414 -42105140 - MIR SINE MIR -11 251 6 213 279 47 12 chr6 147174896 147174982 -42104572 - MIR SINE MIR -73 189 101 21 36 0 0 chr6 147175182 147175210 -42104344 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr6 147176193 147176229 -42103325 + AT_rich Low_complexity Low_complexity 1 36 0 26 50 0 0 chr6 147176395 147176435 -42103119 + AT_rich Low_complexity Low_complexity 1 40 0 375 247 10 10 chr6 147177464 147177561 -42101993 - MER5B DNA MER1_type -81 97 1 396 291 9 9 chr6 147177562 147177672 -42101882 + L2 LINE L2 3149 3258 -14 488 274 120 6 chr6 147178884 147179059 -42100495 + MIR SINE MIR 6 200 -62 206 31 0 31 chr6 147180780 147180812 -42098742 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 30 77 0 0 chr6 147181554 147181619 -42097935 + AT_rich Low_complexity Low_complexity 1 65 0 2244 89 10 0 chr6 147181670 147181961 -42097593 - AluSc SINE Alu -15 294 1 22 56 0 0 chr6 147183032 147183068 -42096486 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr6 147183211 147183253 -42096301 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr6 147183523 147183552 -42096002 + AT_rich Low_complexity Low_complexity 1 29 0 822 165 0 0 chr6 147183552 147183673 -42095881 - FLAM_C SINE Alu -20 123 3 211 328 60 0 chr6 147183790 147183857 -42095697 - L2 LINE L2 -13 3259 3189 237 240 50 16 chr6 147183986 147184107 -42095447 + L1M4 LINE L1 3092 3216 -2930 2244 78 0 0 chr6 147185857 147186172 -42093382 - AluY SINE Alu 0 326 12 629 277 52 26 chr6 147186230 147186461 -42093093 - L1MEd LINE L1 -5385 734 498 274 318 87 0 chr6 147186639 147186765 -42092789 - L1MEd LINE L1 -5860 259 123 1127 247 121 34 chr6 147186930 147187926 -42091628 - L1ME LINE L1 -367 5795 4625 1734 149 9 25 chr6 147187931 147188279 -42091275 - MER4A LTR ERV1 0 664 263 701 101 0 10 chr6 147188279 147188378 -42091176 - MER4A LTR ERV1 -566 98 1 766 250 211 12 chr6 147188389 147188973 -42090581 - L1ME LINE L1 -1545 4601 3902 313 241 47 82 chr6 147188993 147189163 -42090391 - HAL1 LINE L1 -2033 474 311 1616 199 17 0 chr6 147189167 147189454 -42090100 - AluJo SINE Alu -18 294 3 2042 134 0 7 chr6 147189504 147189803 -42089751 - AluSc SINE Alu -12 297 1 717 303 89 34 chr6 147189979 147190010 -42089544 - L2 LINE L2 0 3313 3285 951 128 5 83 chr6 147190010 147190214 -42089340 + MER53 DNA DNA 1 188 -1 717 303 89 34 chr6 147190214 147190712 -42088842 - L2 LINE L2 -28 3285 2759 316 64 0 0 chr6 147190753 147190800 -42088754 + L1PA13 LINE L1 6113 6159 -4 2124 104 14 0 chr6 147190991 147191278 -42088276 - AluSx SINE Alu -19 293 3 349 245 77 84 chr6 147191311 147191466 -42088088 - L2 LINE L2 -611 2703 2550 39 38 0 0 chr6 147192155 147192208 -42087346 + AT_rich Low_complexity Low_complexity 1 53 0 405 159 0 84 chr6 147192392 147192499 -42087055 - L1PA11 LINE L1 -1 6173 6076 504 324 74 8 chr6 147193082 147193326 -42086228 - MIR SINE MIR 0 262 3 2229 54 47 30 chr6 147194360 147194656 -42084898 + AluY SINE Alu 1 301 -10 195 250 150 79 chr6 147194694 147194834 -42084720 + L2 LINE L2 3164 3313 0 355 120 0 0 chr6 147194890 147194940 -42084614 - 5S rRNA rRNA -70 51 2 210 312 75 43 chr6 147195643 147195736 -42083818 + L2 LINE L2 3156 3251 -21 1594 115 0 9 chr6 147196828 147197046 -42082508 - AluY SINE Alu -95 216 1 2157 104 0 0 chr6 147198699 147198977 -42080577 - AluSx SINE Alu -21 291 14 2267 99 0 0 chr6 147199193 147199486 -42080068 + AluSg SINE Alu 1 293 -17 280 347 48 12 chr6 147200386 147200553 -42079001 - MIR3 SINE MIR -4 204 32 181 255 0 0 chr6 147201399 147201446 -42078108 + MIR SINE MIR 160 206 -56 1515 192 37 14 chr6 147201583 147201880 -42077674 + AluJo SINE Alu 3 306 -6 500 268 186 36 chr6 147201911 147202105 -42077449 - MIR SINE MIR -35 227 5 200 269 19 0 chr6 147202426 147202478 -42077076 + L3b LINE CR1 1528 1580 -3 714 124 0 8 chr6 147202549 147202670 -42076884 + L1MB8 LINE L1 6049 6168 -10 248 247 70 23 chr6 147203100 147203187 -42076367 - MIR SINE MIR -59 149 58 997 191 57 119 chr6 147204485 147204898 -42074656 + MLT1B LTR MaLR 1 393 -3 814 288 87 82 chr6 147205309 147206720 -42072834 + L1MEc LINE L1 34 1451 -4945 396 299 130 22 chr6 147207131 147207362 -42072192 - MIR SINE MIR -3 259 4 27 0 0 0 chr6 147207674 147207701 -42071853 + AT_rich Low_complexity Low_complexity 1 27 0 205 197 0 16 chr6 147207772 147207828 -42071726 + T-rich Low_complexity Low_complexity 2 57 0 7595 30 0 0 chr6 147207828 147209397 -42070157 - L1PA3 LINE L1 -3 6152 4584 412 303 33 7 chr6 147209466 147209618 -42069936 + MLT1I LTR MaLR 1 156 -253 393 145 14 0 chr6 147209753 147209822 -42069732 + MLT1I LTR MaLR 334 403 -6 340 362 65 46 chr6 147210201 147210508 -42069046 - HAL1 LINE L1 -898 1609 1297 1472 180 0 70 chr6 147210665 147210981 -42068573 + AluJo SINE Alu 11 304 -8 282 192 56 48 chr6 147211050 147211149 -42068405 + MLT1H LTR MaLR 39 174 -375 280 258 32 21 chr6 147211306 147211399 -42068155 + MLT1H LTR MaLR 456 549 0 213 94 0 0 chr6 147212135 147212167 -42067387 + (TA)n Simple_repeat Simple_repeat 2 33 0 327 167 0 0 chr6 147212437 147212503 -42067051 + (TA)n Simple_repeat Simple_repeat 1 66 0 1935 147 3 0 chr6 147212503 147212671 -42066883 - AluSx SINE Alu -25 287 116 207 0 0 0 chr6 147212671 147212694 -42066860 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 1935 147 3 0 chr6 147212694 147212811 -42066743 - AluSx SINE Alu -196 116 1 194 352 29 19 chr6 147213281 147213386 -42066168 - L2 LINE L2 -222 3050 2945 359 219 109 42 chr6 147215567 147215686 -42063868 + MER94 DNA DNA 2 128 -6 201 74 0 0 chr6 147216559 147216586 -42062968 + (TCC)n Simple_repeat Simple_repeat 3 29 0 21 36 0 0 chr6 147216643 147216671 -42062883 + AT_rich Low_complexity Low_complexity 1 28 0 420 158 148 30 chr6 147216763 147216864 -42062690 - L2 LINE L2 -2 3311 3199 226 279 125 15 chr6 147217223 147217359 -42062195 - L1ME LINE L1 -362 5759 5609 27 73 0 0 chr6 147217682 147217737 -42061817 + AT_rich Low_complexity Low_complexity 1 55 0 2349 107 37 8 chr6 147218316 147218670 -42060884 + THE1B LTR MaLR 1 364 0 201 74 0 0 chr6 147219132 147219159 -42060395 + (A)n Simple_repeat Simple_repeat 1 27 0 2261 113 0 3 chr6 147219770 147220081 -42059473 - AluSg SINE Alu 0 310 1 2001 158 3 0 chr6 147220431 147220734 -42058820 - AluSx SINE Alu -8 304 1 332 302 36 22 chr6 147222486 147222625 -42056929 + MER5A DNA MER1_type 1 141 -48 324 312 80 8 chr6 147222517 147222642 -42056912 - MER5B DNA MER1_type -18 160 27 * 189 0 0 0 chr6 147222668 147222689 -42056865 + (A)n Simple_repeat Simple_repeat 1 21 0 2049 146 0 0 chr6 147223111 147223413 -42056141 - AluSx SINE Alu -10 302 1 5536 154 20 32 chr6 147224199 147225283 -42054271 - MER11C LTR ERVK 0 1071 1 1992 157 0 0 chr6 147225300 147225612 -42053942 - AluJb SINE Alu 0 312 1 744 186 0 0 chr6 147225843 147225956 -42053598 - FLAM_C SINE Alu -24 119 7 574 246 164 9 chr6 147225964 147226184 -42053370 - L1ME3A LINE L1 -77 6093 5840 250 253 131 0 chr6 147226196 147226295 -42053259 + Charlie8 DNA MER1_type 455 566 -1851 1762 250 70 55 chr6 147226355 147227030 -42052524 - L1ME3A LINE L1 0 6170 5486 1442 262 70 41 chr6 147227104 147227934 -42051620 - L1M1 LINE L1 -713 5449 4647 192 268 42 28 chr6 147228002 147228073 -42051481 + L2 LINE L2 2730 2801 -513 233 316 10 0 chr6 147228077 147228175 -42051379 - L1ME3A LINE L1 -745 5425 5327 2078 102 4 0 chr6 147228219 147228493 -42051061 - AluSq SINE Alu -6 307 33 204 132 26 0 chr6 147229706 147229744 -42049810 + (TG)n Simple_repeat Simple_repeat 1 39 0 546 113 0 0 chr6 147229920 147230000 -42049554 + MADE1 DNA Mariner 1 80 0 196 204 74 19 chr6 147230265 147230319 -42049235 + L2 LINE L2 3216 3272 0 233 314 8 81 chr6 147230353 147230477 -42049077 + L2 LINE L2 3180 3294 -19 200 114 29 0 chr6 147233249 147233284 -42046270 + (CAT)n Simple_repeat Simple_repeat 3 38 0 623 321 159 27 chr6 147233468 147234028 -42045526 - L2 LINE L2 -610 2704 2071 202 315 55 0 chr6 147234812 147234885 -42044669 - MIR SINE MIR -12 250 174 446 193 140 82 chr6 147235842 147235947 -42043607 + L2 LINE L2 2199 2296 -1018 1702 157 49 35 chr6 147235947 147236317 -42043237 - THE1C LTR MaLR 0 375 1 446 193 140 82 chr6 147236317 147236418 -42043136 + L2 LINE L2 2296 2417 -897 690 289 96 24 chr6 147236457 147236789 -42042765 - MLT1L LTR MaLR -2 613 258 835 315 41 35 chr6 147236914 147237397 -42042157 + L1MEc LINE L1 35 520 -5876 2344 205 94 40 chr6 147238443 147239019 -42040535 + Zaphod DNA AcHobo 2 608 -3423 1020 232 35 0 chr6 147239026 147239285 -42040269 + Zaphod DNA AcHobo 3733 4000 -31 1772 197 16 16 chr6 147240961 147241326 -42038228 - MLT1A1 LTR MaLR 0 365 1 370 244 74 7 chr6 147242639 147242774 -42036780 - MER112 DNA MER1_type -48 212 69 201 380 97 0 chr6 147243169 147243282 -42036272 - L2 LINE L2 0 3272 3149 1079 205 48 0 chr6 147243283 147243493 -42036061 + MER58A DNA MER1_type 1 220 -4 237 306 100 68 chr6 147243922 147244232 -42035322 + Charlie8 DNA MER1_type 107 426 -1991 2262 105 0 0 chr6 147244242 147244537 -42035017 + AluSg1 SINE Alu 1 295 -14 744 150 170 0 chr6 147244600 147244747 -42034807 + MER2 DNA MER2_type 24 195 -150 22 35 0 0 chr6 147244748 147244777 -42034777 + AT_rich Low_complexity Low_complexity 1 29 0 282 277 15 0 chr6 147244797 147244862 -42034692 + MER2 DNA MER2_type 280 345 0 197 306 111 56 chr6 147245058 147245202 -42034352 - MIR3 SINE MIR -27 181 30 204 285 60 60 chr6 147246945 147247096 -42032458 + MIR SINE MIR 53 203 -59 376 283 28 9 chr6 147247521 147247627 -42031927 + L3b LINE CR1 1289 1396 -187 261 327 115 19 chr6 147247875 147248031 -42031523 - MIR3 SINE MIR -15 193 23 324 111 0 0 chr6 147250667 147250721 -42028833 + (CCTA)n Simple_repeat Simple_repeat 2 55 0 1056 285 35 63 chr6 147250884 147251147 -42028407 + L2 LINE L2 2866 3112 -201 2171 109 13 0 chr6 147251147 147251449 -42028105 - AluSp SINE Alu -7 306 1 1056 285 35 63 chr6 147251449 147251645 -42027909 + L2 LINE L2 3112 3312 -1 5040 173 16 16 chr6 147251807 147252766 -42026788 + L1MA10 LINE L1 5363 6321 -13 1795 157 7 14 chr6 147253766 147254088 -42025466 + AluJb SINE Alu 1 320 0 410 267 6 105 chr6 147254108 147254220 -42025334 + MIR SINE MIR 108 199 -63 389 76 15 0 chr6 147254220 147254286 -42025268 + (TATG)n Simple_repeat Simple_repeat 2 68 0 410 267 6 105 chr6 147254286 147254345 -42025209 + MIR SINE MIR 199 262 0 529 283 33 36 chr6 147254474 147254717 -42024837 + MLT1H LTR MaLR 38 287 -122 384 239 29 94 chr6 147254751 147254889 -42024665 + MLT1H LTR MaLR 421 549 0 26 30 0 0 chr6 147255475 147255508 -42024046 + AT_rich Low_complexity Low_complexity 1 33 0 540 240 45 19 chr6 147256007 147256161 -42023393 - MER5B DNA MER1_type -1 177 20 543 335 35 0 chr6 147256524 147256727 -42022827 - MER63A DNA MER1_type 0 210 1 358 282 29 0 chr6 147258201 147258304 -42021250 + MER5A DNA MER1_type 7 112 -77 260 226 0 12 chr6 147258893 147258977 -42020577 + GA-rich Low_complexity Low_complexity 2 84 0 1760 208 19 8 chr6 147260563 147260923 -42018631 + MLT1A1 LTR MaLR 1 364 -1 1837 196 8 14 chr6 147261474 147261841 -42017713 + MLT1A1 LTR MaLR 1 365 0 288 0 0 0 chr6 147263004 147263036 -42016518 + (CA)n Simple_repeat Simple_repeat 1 32 0 366 300 60 33 chr6 147264392 147264542 -42015012 + MIR SINE MIR 3 156 -106 288 135 36 20 chr6 147264547 147264619 -42014935 + L1M1 LINE L1 5676 5751 -418 1906 126 46 3 chr6 147264676 147264961 -42014593 + AluSc SINE Alu 1 297 -12 32 26 0 0 chr6 147265642 147265681 -42013873 + AT_rich Low_complexity Low_complexity 1 39 0 539 272 104 36 chr6 147265873 147266107 -42013447 - L1MEc LINE L1 -4742 1654 1382 342 0 0 0 chr6 147266107 147266145 -42013409 + (TG)n Simple_repeat Simple_repeat 2 39 0 539 272 104 36 chr6 147266145 147266296 -42013258 - L1MEc LINE L1 -5014 1382 1243 267 297 89 72 chr6 147266744 147266980 -42012574 - L1MEc LINE L1 -5876 329 90 1662 63 10 0 chr6 147267111 147267317 -42012237 + AluY SINE Alu 99 306 -5 24 0 0 0 chr6 147267554 147267578 -42011976 + AT_rich Low_complexity Low_complexity 1 24 0 305 47 23 0 chr6 147268049 147268092 -42011462 + (TG)n Simple_repeat Simple_repeat 2 45 0 300 164 0 96 chr6 147269218 147269291 -42010263 - L1MC4 LINE L1 -1363 6679 6614 583 157 0 22 chr6 147270717 147270851 -42008703 + CT-rich Low_complexity Low_complexity 2 132 0 24 67 0 0 chr6 147271017 147271062 -42008492 + AT_rich Low_complexity Low_complexity 1 45 0 248 189 0 0 chr6 147271831 147271868 -42007686 + L1MDa LINE L1 15 51 -6489 2606 276 72 16 chr6 147271872 147273328 -42006226 + L1M4 LINE L1 2487 4018 -2128 816 255 11 40 chr6 147273333 147273682 -42005872 + L1M4 LINE L1 4942 5280 -866 3187 143 21 5 chr6 147273685 147274521 -42005033 - L1M1 LINE L1 -743 5403 4493 4408 158 15 5 chr6 147274535 147275328 -42004226 + L1MA4 LINE L1 5494 6294 -6 590 143 48 20 chr6 147275360 147275507 -42004047 - Charlie5 DNA MER1_type -56 2556 2406 859 314 45 62 chr6 147275538 147276099 -42003455 + HERVL LTR ERVL 3930 4480 -1174 864 188 64 60 chr6 147276108 147276326 -42003228 + MER20 DNA MER1_type 1 219 0 1558 143 84 4 chr6 147276332 147276738 -42002816 - L1M2 LINE L1 -699 5592 5161 2176 104 6 6 chr6 147277030 147277357 -42002197 - L1P LINE L1 -1582 4564 4238 5644 70 0 12 chr6 147277357 147278094 -42001460 + L1PA8 LINE L1 5427 6171 -1 298 311 62 48 chr6 147278256 147278598 -42000956 + HERVL LTR ERVL 5016 5334 -320 952 300 97 22 chr6 147278742 147279145 -42000409 + LTR16A LTR ERVL 18 450 0 2074 130 3 7 chr6 147279652 147279960 -41999594 - AluSg SINE Alu -1 309 3 375 260 91 78 chr6 147280222 147280464 -41999090 - L1M4c LINE L1 -2580 3846 3602 327 274 113 60 chr6 147280553 147280940 -41998614 - L1M4c LINE L1 -4768 1660 1205 378 284 64 77 chr6 147281029 147281342 -41998212 - L1M4 LINE L1 -1912 4234 3926 967 299 45 24 chr6 147281380 147281761 -41997793 + MLT1I LTR MaLR 6 394 -15 198 333 14 14 chr6 147282155 147282224 -41997330 - L2 LINE L2 -219 3053 2985 237 327 0 9 chr6 147284988 147285095 -41994459 - L1MC/D LINE L1 -2016 5792 5687 1556 233 116 24 chr6 147285188 147285655 -41993899 - HERVL40 LTR ERVL -2485 3045 2536 662 268 33 16 chr6 147285723 147285906 -41993648 - HERVL40 LTR ERVL -4017 1513 1328 1210 245 20 27 chr6 147285964 147286262 -41993292 - HERVL40 LTR ERVL -4317 1213 918 1964 272 20 8 chr6 147286550 147287039 -41992515 - LTR40a LTR ERVL 0 519 25 503 287 119 28 chr6 147288151 147288552 -41991002 + L1M4 LINE L1 675 1038 -5272 2036 142 121 18 chr6 147288552 147288940 -41990614 - MSTA LTR MaLR 0 428 1 9651 132 11 35 chr6 147288941 147290557 -41988997 - MSTA-int LTR MaLR -1 1579 3 2000 143 115 43 chr6 147290559 147290781 -41988773 - MSTA LTR MaLR 0 428 224 2177 130 0 0 chr6 147290781 147291080 -41988474 - AluSc SINE Alu -10 299 1 2000 143 115 43 chr6 147291080 147291256 -41988298 - MSTA LTR MaLR -204 224 1 503 287 119 28 chr6 147291256 147291739 -41987815 + L1M4 LINE L1 1038 1686 -4624 965 209 92 24 chr6 147292226 147292473 -41987081 - MLT1D LTR MaLR -13 492 243 209 264 50 0 chr6 147292544 147292703 -41986851 + (TA)n Simple_repeat Simple_repeat 2 168 0 3715 98 4 4 chr6 147293191 147293702 -41985852 + MER9 LTR ERVK 1 511 0 504 243 7 29 chr6 147293749 147293885 -41985669 - MLT1D LTR MaLR -372 133 1 350 291 111 29 chr6 147293898 147294276 -41985278 + L1M4 LINE L1 3664 4072 -2057 15098 157 86 16 chr6 147294278 147295924 -41983630 + L1PB1 LINE L1 3 1533 -5334 2115 130 13 0 chr6 147295924 147296231 -41983323 + AluSq SINE Alu 1 311 -2 15098 157 86 16 chr6 147296231 147299250 -41980304 + L1PB1 LINE L1 1533 5205 -1662 342 0 0 0 chr6 147299250 147299288 -41980266 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 15098 157 86 16 chr6 147299288 147300689 -41978865 + L1PB1 LINE L1 5205 6507 -360 348 111 0 0 chr6 147300698 147300752 -41978802 + (TA)n Simple_repeat Simple_repeat 2 55 0 1098 69 31 19 chr6 147300755 147300915 -41978639 + L1PB1 LINE L1 6706 6867 0 851 307 111 9 chr6 147300945 147301992 -41977562 + L1M4 LINE L1 4083 5236 -893 407 279 76 25 chr6 147302080 147302377 -41977177 + L1M4 LINE L1 5324 5643 -524 2318 93 0 31 chr6 147302955 147303277 -41976277 + AluSx SINE Alu 1 312 0 418 283 101 36 chr6 147303347 147303732 -41975822 - L1ME4a LINE L1 -96 6025 5616 2120 134 6 13 chr6 147304001 147304315 -41975239 + AluSx SINE Alu 1 312 0 306 233 82 14 chr6 147304355 147304501 -41975053 + HAL1 LINE L1 942 1097 -1410 189 340 59 78 chr6 147306239 147306392 -41973162 - L2 LINE L2 -48 3224 3075 24 0 0 0 chr6 147307134 147307158 -41972396 + AT_rich Low_complexity Low_complexity 1 24 0 310 335 32 52 chr6 147307207 147307362 -41972192 + MIR3 SINE MIR 33 184 -24 2020 112 0 21 chr6 147308337 147308662 -41970892 + AluSc SINE Alu 1 319 0 3375 145 110 19 chr6 147309403 147310113 -41969441 - LTR1B LTR ERV1 0 785 1 318 330 94 40 chr6 147310190 147310466 -41969088 + L2 LINE L2 1495 1785 -1529 587 296 17 62 chr6 147310563 147310682 -41968872 + L2 LINE L2 2034 2157 -1157 2499 47 23 0 chr6 147310682 147310981 -41968573 - AluY SINE Alu -5 306 1 587 296 17 62 chr6 147310981 147311216 -41968338 + L2 LINE L2 2157 2372 -942 676 173 55 8 chr6 147311219 147311346 -41968208 - FLAM_C SINE Alu -10 133 1 360 286 48 0 chr6 147311643 147311748 -41967806 + L2 LINE L2 3203 3312 -1 303 49 0 0 chr6 147313293 147313334 -41966220 + (TG)n Simple_repeat Simple_repeat 2 42 0 24 53 0 0 chr6 147313472 147313510 -41966044 + AT_rich Low_complexity Low_complexity 1 38 0 1843 126 139 13 chr6 147314696 147315076 -41964478 - MSTA LTR MaLR 0 428 1 262 376 12 0 chr6 147315394 147315479 -41964075 - L2 LINE L2 -23 3249 3164 763 242 35 28 chr6 147315489 147315778 -41963776 - L1MC5 LINE L1 -11 7950 7660 881 165 130 0 chr6 147315789 147315857 -41963697 + L1MA9 LINE L1 6084 6142 -170 363 23 0 0 chr6 147315857 147315901 -41963653 + (CA)n Simple_repeat Simple_repeat 1 44 0 881 165 130 0 chr6 147315901 147316032 -41963522 + L1MA9 LINE L1 6142 6309 -3 23 33 0 0 chr6 147316032 147316062 -41963492 + AT_rich Low_complexity Low_complexity 1 30 0 648 229 74 50 chr6 147316167 147316425 -41963129 - L1MC5 LINE L1 -428 7533 7270 320 200 11 0 chr6 147316425 147316520 -41963034 + (TA)n Simple_repeat Simple_repeat 1 96 0 1816 149 33 0 chr6 147318166 147318442 -41961112 + AluSq SINE Alu 1 285 -28 186 43 0 0 chr6 147318446 147318469 -41961085 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 14082 184 21 8 chr6 147318854 147326083 -41953471 - L1PA16 LINE L1 -3 6866 3 261 280 172 6 chr6 147326089 147326246 -41953308 - L1ME LINE L1 -321 5849 5667 25 0 0 0 chr6 147326396 147326421 -41953133 + AT_rich Low_complexity Low_complexity 1 25 0 306 290 125 48 chr6 147326777 147327505 -41952049 - L1ME LINE L1 -2379 3767 2984 183 80 0 0 chr6 147327799 147327824 -41951730 + (T)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chr6 147328439 147328462 -41951092 + (A)n Simple_repeat Simple_repeat 1 23 0 1825 183 19 17 chr6 147328462 147328822 -41950732 + L1MA7 LINE L1 5894 6254 -37 490 226 0 0 chr6 147328829 147328922 -41950632 - MER7A DNA MER2_type -255 91 1 268 233 69 52 chr6 147329117 147329233 -41950321 - L1MC5 LINE L1 -37 7924 7807 2083 116 33 0 chr6 147329988 147330290 -41949264 + AluSx SINE Alu 1 312 0 241 274 76 19 chr6 147330297 147330436 -41949118 + MIR SINE MIR 31 262 0 277 265 20 41 chr6 147330483 147330581 -41948973 + MIR SINE MIR 65 160 -102 192 77 0 0 chr6 147331190 147331216 -41948338 + (T)n Simple_repeat Simple_repeat 1 26 0 1070 243 155 27 chr6 147331283 147331768 -41947786 + Charlie2 DNA MER1_type 1881 2427 -435 425 302 31 19 chr6 147331770 147331929 -41947625 - L2 LINE L2 -1 3312 3152 550 212 91 10 chr6 147331945 147332143 -41947411 + Charlie2 DNA MER1_type 2434 2647 -215 261 143 10 71 chr6 147332146 147332244 -41947310 + (TTATA)n Simple_repeat Simple_repeat 5 96 0 22 70 0 0 chr6 147333030 147333073 -41946481 + AT_rich Low_complexity Low_complexity 1 43 0 2046 127 32 0 chr6 147333512 147333859 -41945695 + L1MA2 LINE L1 5947 6304 0 495 259 33 71 chr6 147334629 147334810 -41944744 + MLT1H1 LTR MaLR 49 230 -325 445 286 53 0 chr6 147334863 147334996 -41944558 + MLT1H1 LTR MaLR 416 555 0 460 322 111 70 chr6 147334999 147335269 -41944285 + L2 LINE L2 2992 3272 0 318 26 0 0 chr6 147335869 147335908 -41943646 + (CA)n Simple_repeat Simple_repeat 2 40 0 182 245 82 0 chr6 147336239 147336288 -41943266 - L3b LINE CR1 -131 1452 1400 2140 115 3 0 chr6 147336417 147336705 -41942849 - AluSx SINE Alu -11 301 13 291 310 35 9 chr6 147337747 147337863 -41941691 - MIR SINE MIR -34 228 110 946 273 93 53 chr6 147338014 147338313 -41941241 - L2 LINE L2 0 3313 3027 1899 159 27 6 chr6 147338313 147338678 -41940876 - L1MA6 LINE L1 0 6300 5928 946 273 93 53 chr6 147338678 147339040 -41940514 - L2 LINE L2 -286 3027 2632 2594 102 13 11 chr6 147339089 147339462 -41940092 + THE1C LTR MaLR 2 375 0 10447 106 14 32 chr6 147339462 147341070 -41938484 + THE1C-int LTR MaLR 1 1580 0 2416 112 5 26 chr6 147341070 147341453 -41938101 + THE1C LTR MaLR 1 375 0 355 276 26 13 chr6 147341844 147341996 -41937558 - L1MCc LINE L1 -4604 2518 2365 227 259 12 12 chr6 147342099 147342180 -41937374 - L1MCc LINE L1 -4820 2121 2041 383 311 62 10 chr6 147342249 147342630 -41936924 - L1MCc LINE L1 -4890 1533 1297 353 233 113 30 chr6 147346708 147346841 -41932713 + MER112 DNA MER1_type 26 169 -91 1056 226 117 8 chr6 147348047 147348286 -41931268 - AluJo SINE Alu -15 297 33 264 253 51 13 chr6 147348641 147348720 -41930834 + L2 LINE L2 3182 3263 -50 441 248 19 25 chr6 147349766 147349927 -41929627 + (TATATG)n Simple_repeat Simple_repeat 2 161 0 206 233 67 17 chr6 147351253 147351313 -41928241 + MIR3 SINE MIR 135 197 -11 331 283 125 20 chr6 147352798 147352950 -41926604 - MIR SINE MIR -1 261 94 662 307 104 65 chr6 147353092 147353815 -41925739 + L1ME3A LINE L1 102 852 -5353 414 274 64 39 chr6 147354019 147354324 -41925230 + L1ME3A LINE L1 1085 1432 -4862 241 138 138 0 chr6 147354372 147354430 -41925124 + L1MB7 LINE L1 6119 6184 0 225 335 55 33 chr6 147354506 147354781 -41924773 + L1ME3A LINE L1 1538 1818 -4578 657 299 201 10 chr6 147354796 147355382 -41924172 + L1ME3A LINE L1 2118 2765 -3450 400 264 97 61 chr6 147355449 147355760 -41923794 + L1ME3A LINE L1 5714 6035 -204 740 272 124 39 chr6 147355794 147356228 -41923326 - MLT1G1 LTR MaLR -7 588 118 2298 99 10 0 chr6 147356863 147357167 -41922387 - AluSc SINE Alu -2 307 1 350 339 0 0 chr6 147357395 147357510 -41922044 - L2 LINE L2 -10 3303 3189 329 43 21 0 chr6 147358607 147358654 -41920900 + (TG)n Simple_repeat Simple_repeat 1 48 0 2321 97 0 3 chr6 147359067 147359375 -41920179 - AluSc SINE Alu -2 307 1 192 40 0 0 chr6 147359379 147359404 -41920150 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 569 275 49 0 chr6 147359421 147359563 -41919991 - L2 LINE L2 0 3313 3165 1789 246 45 39 chr6 147363829 147364345 -41915209 - LTR40a LTR ERVL 0 519 1 1983 185 48 30 chr6 147365840 147366299 -41913255 - MLT1C LTR MaLR 0 467 1 2228 160 85 120 chr6 147366570 147367227 -41912327 + LTR27 LTR ERV1 3 636 0 589 164 69 0 chr6 147368233 147368349 -41911205 + MLT1B LTR MaLR 1 124 -266 180 305 0 61 chr6 147368441 147368523 -41911031 + L2 LINE L2 3222 3298 -15 2405 174 52 40 chr6 147368612 147369111 -41910443 + MLT1D LTR MaLR 1 505 0 488 205 63 31 chr6 147369818 147369945 -41909609 - L2 LINE L2 -1231 2083 1953 628 283 58 21 chr6 147370362 147370602 -41908952 - MIR SINE MIR -8 254 6 201 373 63 8 chr6 147370755 147370881 -41908673 + L2 LINE L2 3136 3268 -4 752 269 92 4 chr6 147372470 147372708 -41906846 + MIR SINE MIR 4 262 0 2064 124 28 59 chr6 147374088 147374475 -41905079 + THE1C LTR MaLR 1 375 0 208 317 61 24 chr6 147375157 147375239 -41904315 - MIR SINE MIR -96 112 28 1912 102 0 0 chr6 147375907 147376153 -41903401 - AluSx SINE Alu -18 294 49 206 322 110 0 chr6 147376690 147376808 -41902746 + MIR SINE MIR 122 252 -10 23 68 0 0 chr6 147376895 147376939 -41902615 + AT_rich Low_complexity Low_complexity 1 44 0 229 246 16 0 chr6 147376999 147377060 -41902494 + L2 LINE L2 3211 3272 0 215 308 99 22 chr6 147377393 147377484 -41902070 - MIR SINE MIR -98 164 67 474 108 0 0 chr6 147377537 147377611 -41901943 + (TGGA)n Simple_repeat Simple_repeat 4 77 0 1835 225 58 44 chr6 147378593 147379077 -41900477 - MLT1E2 LTR MaLR -8 618 137 225 191 21 21 chr6 147379107 147379154 -41900400 - MLT1E2 LTR MaLR -574 50 4 2377 59 0 7 chr6 147379438 147379727 -41899827 - AluY SINE Alu -24 287 1 5744 146 38 9 chr6 147380050 147381341 -41898213 - L1MA7 LINE L1 -1 6290 4960 2023 125 7 14 chr6 147382091 147382387 -41897167 + AluSx SINE Alu 1 294 -18 2029 147 0 25 chr6 147383416 147383735 -41895819 + AluSx SINE Alu 1 311 -1 182 280 20 0 chr6 147384543 147384593 -41894961 + L2 LINE L2 2986 3036 -236 237 320 48 48 chr6 147384737 147384862 -41894692 + L2 LINE L2 3180 3304 -9 348 148 37 25 chr6 147386469 147386550 -41893004 + L1MB8 LINE L1 6096 6177 -1 1574 169 0 8 chr6 147388094 147388349 -41891205 - AluJb SINE Alu -14 298 46 253 259 96 52 chr6 147390553 147390688 -41888866 + MIR3 SINE MIR 1 141 -67 493 319 12 6 chr6 147390946 147391109 -41888445 + MIR SINE MIR 89 252 -10 299 260 77 19 chr6 147391616 147391720 -41887834 + MIR SINE MIR 97 206 -56 2394 108 31 0 chr6 147391759 147392110 -41887444 - THE1B LTR MaLR 0 364 3 1726 154 18 11 chr6 147392728 147393008 -41886546 - AluSx SINE Alu -30 282 1 1175 81 6 6 chr6 147393102 147393275 -41886279 - L1MA5 LINE L1 -2 6298 6126 22 0 0 0 chr6 147393707 147393729 -41885825 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 147394783 147394804 -41884750 + AT_rich Low_complexity Low_complexity 1 21 0 2183 105 0 0 chr6 147395431 147395743 -41883811 + AluSq SINE Alu 1 312 0 1336 79 0 0 chr6 147395763 147395927 -41883627 - AluY SINE Alu -16 295 132 239 237 153 68 chr6 147395947 147396065 -41883489 - MER5A DNA MER1_type -22 156 29 185 359 0 13 chr6 147396015 147396093 -41883461 + MER5A DNA MER1_type 113 189 0 * 242 336 62 24 chr6 147396188 147396399 -41883155 - L2 LINE L2 -810 2504 2286 379 389 0 0 chr6 147396872 147396998 -41882556 - L2 LINE L2 0 3272 3147 5368 237 91 25 chr6 147397453 147399443 -41880111 + L1MEc LINE L1 288 2409 -3987 2685 230 69 55 chr6 147400139 147400427 -41879127 - L1MD2 LINE L1 -14 6345 6062 2346 162 82 44 chr6 147400427 147400486 -41879068 + LTR42 LTR ERVL 1 56 -439 1683 170 3 33 chr6 147400486 147400792 -41878762 + AluJo SINE Alu 1 297 -15 2346 162 82 44 chr6 147400792 147401207 -41878347 + LTR42 LTR ERVL 56 493 -2 2685 230 69 55 chr6 147401207 147401852 -41877702 - L1MD2 LINE L1 -297 6062 5396 23 97 0 0 chr6 147403860 147403932 -41875622 + AT_rich Low_complexity Low_complexity 1 72 0 22 0 0 0 chr6 147405155 147405177 -41874377 + AT_rich Low_complexity Low_complexity 1 22 0 246 269 157 19 chr6 147406108 147406216 -41873338 - MIR SINE MIR -16 246 124 1137 172 0 35 chr6 147407124 147407327 -41872227 + AluJo SINE Alu 1 196 -116 374 219 67 0 chr6 147407578 147407683 -41871871 - MER103 DNA DNA -7 159 48 214 260 39 13 chr6 147408052 147408129 -41871425 + L2 LINE L2 3235 3313 0 411 281 18 1 chr6 147408306 147408430 -41871124 + MLT1J1 LTR MaLR 45 168 -278 * 527 267 163 5 chr6 147408427 147408629 -41870925 + MLT1J2 LTR MaLR 205 438 -12 22 0 0 0 chr6 147408791 147408813 -41870741 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 147408879 147408901 -41870653 + AT_rich Low_complexity Low_complexity 1 22 0 222 62 0 0 chr6 147408929 147408961 -41870593 + (T)n Simple_repeat Simple_repeat 1 32 0 468 205 90 36 chr6 147409244 147409377 -41870177 - L1MC4 LINE L1 0 8042 7897 281 26 26 0 chr6 147409377 147409415 -41870139 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 468 205 90 36 chr6 147409415 147409447 -41870107 - L1MC4 LINE L1 -145 7897 7868 304 337 63 11 chr6 147409449 147409639 -41869915 + L1ME LINE L1 5575 5774 -347 829 160 0 8 chr6 147412919 147413050 -41866504 - FLAM_C SINE Alu -11 132 3 5197 115 8 16 chr6 147413350 147414170 -41865384 + L1PA16 LINE L1 5344 6157 -9 21 0 0 0 chr6 147414585 147414606 -41864948 + AT_rich Low_complexity Low_complexity 1 21 0 276 30 0 0 chr6 147414612 147414645 -41864909 + (TC)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr6 147415127 147415148 -41864406 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr6 147415930 147415955 -41863599 + (TA)n Simple_repeat Simple_repeat 1 25 0 694 332 116 22 chr6 147416452 147416961 -41862593 + L1ME LINE L1 10 566 -5830 294 294 9 54 chr6 147416986 147417207 -41862347 + L1ME LINE L1 721 931 -5465 * 2787 220 80 16 chr6 147417186 147418104 -41861450 + L1ME LINE L1 4460 5435 -780 1559 174 97 0 chr6 147418104 147418402 -41861152 + MER2 DNA MER2_type 1 327 -18 258 32 0 0 chr6 147418436 147418467 -41861087 + (CA)n Simple_repeat Simple_repeat 2 32 0 305 278 0 0 chr6 147418490 147418580 -41860974 + L1MC4 LINE L1 6614 6703 -1339 345 47 0 0 chr6 147418580 147418623 -41860931 + (TA)n Simple_repeat Simple_repeat 2 44 0 912 191 13 7 chr6 147418630 147418782 -41860772 + MER70B LTR ERVL 4 156 -422 1691 226 11 8 chr6 147418784 147419143 -41860411 + MLT1A1 LTR MaLR 4 363 -2 1559 243 38 0 chr6 147419143 147419455 -41860099 + MER70A LTR ERVL 149 472 0 677 289 42 0 chr6 147419455 147419694 -41859860 + L1ME LINE L1 5437 5685 -548 26456 137 14 13 chr6 147419694 147425690 -41853864 + L1PA8A LINE L1 373 6419 -27 1281 243 112 25 chr6 147425729 147426441 -41853113 + HAL1b LINE L1 261 1121 -227 201 74 0 0 chr6 147427330 147427357 -41852197 + (T)n Simple_repeat Simple_repeat 1 27 0 212 186 51 0 chr6 147427797 147427856 -41851698 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 326 328 34 45 chr6 147427892 147428069 -41851485 + MIR SINE MIR 40 214 -48 2494 76 0 3 chr6 147428363 147428677 -41850877 + AluSq SINE Alu 1 313 0 339 309 24 8 chr6 147428715 147428838 -41850716 - L3 LINE CR1 -159 1418 1294 * 851 300 179 25 chr6 147428834 147429638 -41849916 + L2 LINE L2 2322 3268 -45 2677 208 33 24 chr6 147429658 147430207 -41849347 + MER68 LTR ERV1 9 562 0 1600 244 41 100 chr6 147430887 147431955 -41847599 + L1ME LINE L1 754 1658 -4726 472 345 20 37 chr6 147432049 147432400 -41847154 - LTR16A1 LTR ERVL -109 341 1 584 286 87 40 chr6 147432637 147433901 -41845653 - L1MC4a LINE L1 -748 5398 4632 229 280 9 37 chr6 147433905 147434012 -41845542 + L1M4 LINE L1 5012 5115 -1031 241 301 34 27 chr6 147434034 147434180 -41845374 - L1MC4a LINE L1 -1543 4603 4457 591 329 120 21 chr6 147434317 147434976 -41844578 - L1MC4a LINE L1 -1914 4232 3509 2251 94 0 0 chr6 147435718 147436006 -41843548 + AluSg1 SINE Alu 3 290 -19 282 309 3 61 chr6 147437948 147438112 -41841442 - MIR SINE MIR -58 150 2 21 36 0 0 chr6 147438229 147438257 -41841297 + AT_rich Low_complexity Low_complexity 1 28 0 287 341 65 16 chr6 147439348 147439471 -41840083 - L2 LINE L2 -3 3269 3141 318 67 0 0 chr6 147439677 147439722 -41839832 + (CA)n Simple_repeat Simple_repeat 1 45 0 802 231 71 36 chr6 147439968 147440050 -41839504 + MIR SINE MIR 18 96 -166 1229 171 158 63 chr6 147440050 147440412 -41839142 + MSTD LTR MaLR 1 396 0 802 231 71 36 chr6 147440412 147440554 -41839000 + MIR SINE MIR 96 250 -12 25 51 0 0 chr6 147440951 147440990 -41838564 + AT_rich Low_complexity Low_complexity 1 39 0 31 58 0 0 chr6 147441224 147441276 -41838278 + AT_rich Low_complexity Low_complexity 1 52 0 412 306 35 56 chr6 147441616 147441848 -41837706 + L2 LINE L2 2656 2882 -432 392 288 102 17 chr6 147442015 147442133 -41837421 + L2 LINE L2 3136 3263 -9 3847 43 0 14 chr6 147443701 147444187 -41835367 - L1PA5 LINE L1 -5 6149 5671 1838 107 37 139 chr6 147444892 147445267 -41834287 + MER1B DNA MER1_type 1 337 0 608 290 85 5 chr6 147446303 147446527 -41833027 - MIR SINE MIR 0 262 21 2583 46 0 0 chr6 147447786 147448088 -41831466 + AluY SINE Alu 1 302 -9 191 229 33 66 chr6 147448848 147448909 -41830645 + L2 LINE L2 3254 3312 -1 255 302 104 0 chr6 147448934 147449040 -41830514 + L2 LINE L2 689 805 -2509 184 241 71 71 chr6 147449429 147449541 -41830013 + L3 LINE CR1 655 766 -811 1764 201 92 28 chr6 147450040 147450474 -41829080 + MLT1C LTR MaLR 6 467 0 348 210 25 12 chr6 147451906 147451987 -41827567 + MLT1K LTR MaLR 505 586 -2 634 186 126 27 chr6 147452793 147452976 -41826578 - MIR SINE MIR -59 203 3 473 222 25 62 chr6 147453229 147453391 -41826163 + LTR16A1 LTR ERVL 272 427 -30 290 330 155 5 chr6 147453416 147453622 -41825932 + MIR SINE MIR 8 244 -18 2136 111 0 48 chr6 147454599 147454914 -41824640 - AluSg SINE Alu -10 300 1 254 158 0 0 chr6 147455143 147455181 -41824373 + MER75 DNA T2_type 463 500 -14 2645 36 0 0 chr6 147455370 147455676 -41823878 - AluY SINE Alu -4 307 2 1405 178 85 54 chr6 147455816 147456170 -41823384 + MLT1A1 LTR MaLR 1 365 0 523 263 9 0 chr6 147456614 147456728 -41822826 + MIR SINE MIR 34 148 -114 2256 105 3 0 chr6 147456737 147457031 -41822523 - AluSg SINE Alu -15 295 1 417 217 53 113 chr6 147457894 147458026 -41821528 + L1MC/D LINE L1 5217 5323 -911 2164 127 0 0 chr6 147458026 147458317 -41821237 + AluSx SINE Alu 3 293 -19 417 217 53 113 chr6 147458317 147458474 -41821080 + L1MC/D LINE L1 5323 5488 -746 30 27 0 0 chr6 147458513 147458550 -41821004 + AT_rich Low_complexity Low_complexity 1 37 0 969 131 17 0 chr6 147459040 147459216 -41820338 + CT-rich Low_complexity Low_complexity 1 179 0 559 291 158 47 chr6 147459231 147460098 -41819456 - L2 LINE L2 -11 3302 2324 1983 121 3 28 chr6 147460336 147460664 -41818890 - AluSq SINE Alu 0 321 1 2446 53 0 3 chr6 147460693 147460993 -41818561 + AluY SINE Alu 1 299 -12 1996 39 0 0 chr6 147460993 147461223 -41818331 + AluY SINE Alu 1 230 -81 1041 129 32 77 chr6 147461561 147461809 -41817745 + L1MA10 LINE L1 6096 6332 -2 25 51 0 0 chr6 147462318 147462357 -41817197 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr6 147462453 147462478 -41817076 + AT_rich Low_complexity Low_complexity 1 25 0 452 245 147 18 chr6 147462492 147462655 -41816899 + L3b LINE CR1 1193 1376 -207 200 318 116 23 chr6 147462878 147463007 -41816547 - MIR SINE MIR -109 153 13 581 314 53 12 chr6 147463127 147463372 -41816182 - MIR SINE MIR -4 258 4 573 281 7 20 chr6 147463879 147464032 -41815522 - MIR3 SINE MIR -3 205 55 805 185 0 58 chr6 147465756 147465929 -41813625 - MIR SINE MIR -28 234 72 315 328 63 35 chr6 147466076 147466250 -41813304 - MIR SINE MIR -14 248 70 35 24 0 0 chr6 147467077 147467119 -41812435 + AT_rich Low_complexity Low_complexity 1 42 0 1768 150 67 55 chr6 147467190 147467551 -41812003 - Tigger7 DNA MER2_type 0 2487 2123 4552 142 29 29 chr6 147467559 147468321 -41811233 - Tigger7 DNA MER2_type -1717 770 9 22 35 0 0 chr6 147469511 147469540 -41810014 + AT_rich Low_complexity Low_complexity 1 29 0 186 176 0 0 chr6 147470567 147470618 -41808936 + A-rich Low_complexity Low_complexity 1 51 0 2173 84 18 3 chr6 147471538 147471823 -41807731 - AluY SINE Alu -22 289 1 279 326 104 36 chr6 147471853 147472074 -41807480 + MIR SINE MIR 8 243 -19 2900 3 0 0 chr6 147472605 147472916 -41806638 - AluYa5 SINE Alu 0 311 1 854 268 40 0 chr6 147472927 147473155 -41806399 - MIR SINE MIR -25 237 1 2236 94 0 17 chr6 147473949 147474247 -41805307 + AluSq SINE Alu 1 293 -20 202 340 112 32 chr6 147474355 147474543 -41805011 + L2 LINE L2 1234 1436 -1878 292 310 89 19 chr6 147474664 147474977 -41804577 + L1 LINE L1 3291 3625 -2521 216 0 0 0 chr6 147475089 147475113 -41804441 + (A)n Simple_repeat Simple_repeat 1 24 0 429 331 125 7 chr6 147475117 147475398 -41804156 - L3 LINE CR1 -1023 554 241 619 252 95 27 chr6 147475527 147475749 -41803805 - MIR SINE MIR -13 249 13 23 0 0 0 chr6 147476369 147476392 -41803162 + AT_rich Low_complexity Low_complexity 1 23 0 1018 164 0 0 chr6 147476394 147476540 -41803014 - FRAM SINE Alu -30 146 1 738 224 11 29 chr6 147476810 147476984 -41802570 - MER5B DNA MER1_type 0 178 8 410 317 92 38 chr6 147477724 147477964 -41801590 + L2 LINE L2 3056 3308 -5 286 327 37 9 chr6 147478054 147478161 -41801393 + MIR SINE MIR 130 239 -23 187 317 150 33 chr6 147478348 147478468 -41801086 + MIR3 SINE MIR 15 148 -60 2082 160 6 0 chr6 147480601 147480944 -41798610 + L1M2 LINE L1 5 349 -6500 6914 173 30 12 chr6 147481049 147483799 -41795755 + L1M2 LINE L1 1452 4251 -2597 497 263 76 13 chr6 147483879 147484103 -41795451 + MLT1G3 LTR MaLR 114 351 -179 344 234 32 0 chr6 147484103 147484197 -41795357 + MLT1G3 LTR MaLR 499 595 0 680 62 21 0 chr6 147484477 147484574 -41794980 + (GAAA)n Simple_repeat Simple_repeat 4 102 0 226 171 14 129 chr6 147484582 147484652 -41794902 + Charlie8 DNA MER1_type 130 191 -2226 1403 210 3 0 chr6 147484762 147485062 -41794492 - L1PB4 LINE L1 0 6156 5856 26 82 0 0 chr6 147485227 147485288 -41794266 + AT_rich Low_complexity Low_complexity 1 61 0 2095 107 17 0 chr6 147485522 147485820 -41793734 + AluSq SINE Alu 1 303 -10 334 277 156 65 chr6 147488117 147488456 -41791098 + L1M2 LINE L1 862 1231 -5618 252 59 0 0 chr6 147488470 147488504 -41791050 + (TCCCG)n Simple_repeat Simple_repeat 4 37 0 239 289 0 36 chr6 147488627 147488710 -41790844 + GA-rich Low_complexity Low_complexity 1 80 0 242 336 129 45 chr6 147490309 147490729 -41788825 + L2 LINE L2 2817 3271 -1 318 246 0 53 chr6 147491373 147491487 -41788067 - HAL1b LINE L1 -28 1320 1213 226 316 79 35 chr6 147492196 147492310 -41787244 - MIR SINE MIR -81 127 8 306 247 172 0 chr6 147493061 147493154 -41786400 - MIR3 SINE MIR -15 193 85 22 0 0 0 chr6 147493648 147493670 -41785884 + AT_rich Low_complexity Low_complexity 1 22 0 6873 35 1 0 chr6 147493961 147494923 -41784631 - L1PA4 LINE L1 -677 5477 4515 5554 33 0 3 chr6 147494923 147495582 -41783972 + L1PA4 LINE L1 5492 6149 -6 362 177 114 0 chr6 147496113 147496192 -41783362 - MIR SINE MIR -57 205 118 730 131 0 110 chr6 147496283 147496428 -41783126 + FLAM_C SINE Alu 5 133 0 393 70 0 0 chr6 147496758 147496815 -41782739 + (CA)n Simple_repeat Simple_repeat 1 57 0 1872 187 0 16 chr6 147497208 147497524 -41782030 + AluJb SINE Alu 2 312 0 251 234 153 45 chr6 147499209 147499320 -41780234 - L2 LINE L2 -1 3312 3190 238 245 20 0 chr6 147500623 147500721 -41778833 + CT-rich Low_complexity Low_complexity 1 100 0 910 237 45 9 chr6 147500802 147501026 -41778528 + MIR SINE MIR 20 251 -11 183 42 0 0 chr6 147502143 147502167 -41777387 + (TTTTTA)n Simple_repeat Simple_repeat 3 26 0 398 350 66 7 chr6 147502397 147502700 -41776854 + HAL1 LINE L1 2 322 -2185 2143 196 32 87 chr6 147502759 147503314 -41776240 + LTR8 LTR ERV1 8 483 -244 279 0 0 0 chr6 147503314 147503345 -41776209 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2143 196 32 87 chr6 147503345 147503578 -41775976 + LTR8 LTR ERV1 483 727 0 1283 261 161 69 chr6 147503578 147504108 -41775446 + HAL1 LINE L1 390 870 -1637 1706 148 6 6 chr6 147504108 147504419 -41775135 + L1MA4 LINE L1 5985 6295 -5 1283 261 161 69 chr6 147504419 147505026 -41774528 + HAL1 LINE L1 870 1420 -1087 2319 125 11 19 chr6 147505026 147505393 -41774161 - THE1B LTR MaLR 0 364 1 1283 261 161 69 chr6 147505393 147505754 -41773800 + HAL1 LINE L1 1420 2026 -481 1906 220 67 17 chr6 147505782 147506427 -41773127 - L1M4 LINE L1 -1121 5025 4349 * 23014 165 17 16 chr6 147506414 147512266 -41767288 - L1PA10 LINE L1 -3 6480 619 1329 248 11 8 chr6 147512338 147512697 -41766857 - L1PA10 LINE L1 -5515 360 1 502 53 13 13 chr6 147512700 147512775 -41766779 + (TTTTC)n Simple_repeat Simple_repeat 4 78 0 1873 146 20 20 chr6 147512799 147513094 -41766460 - AluJo SINE Alu -17 295 1 1274 223 126 11 chr6 147513094 147513547 -41766007 - L1M4 LINE L1 -1763 4383 3879 792 304 78 22 chr6 147513693 147514196 -41765358 - L1MEd LINE L1 -5242 877 347 889 276 43 52 chr6 147514432 147514780 -41764774 + MLT1F LTR MaLR 1 345 -197 381 203 24 65 chr6 147514774 147514897 -41764657 + MLT1F LTR MaLR 450 567 0 * 672 250 44 50 chr6 147515005 147515315 -41764239 + L2 LINE L2 2906 3305 -8 2609 53 0 0 chr6 147516191 147516494 -41763060 + AluY SINE Alu 1 303 -8 194 163 0 23 chr6 147517892 147517935 -41761619 + L2 LINE L2 3265 3306 -7 3440 118 26 9 chr6 147518014 147518592 -41760962 - L1MA6 LINE L1 -1 6299 5712 312 301 0 0 chr6 147519387 147519470 -41760084 - L1MC4 LINE L1 -1339 6703 6621 2337 112 22 25 chr6 147520234 147520599 -41758955 + THE1B LTR MaLR 1 364 0 208 296 14 14 chr6 147521893 147521964 -41757590 - MER5A DNA MER1_type -30 159 89 1535 95 4 70 chr6 147521998 147522239 -41757315 - AluSx SINE Alu -87 225 1 1734 168 0 43 chr6 147523218 147523521 -41756033 + AluJb SINE Alu 1 290 -22 1657 216 0 7 chr6 147523719 147524020 -41755534 - AluJb SINE Alu -13 299 1 1252 206 18 103 chr6 147524521 147524920 -41754634 - MLT1A1 LTR MaLR 0 365 1 683 295 31 12 chr6 147525051 147525305 -41754249 + MIR SINE MIR 2 260 -2 25 51 0 0 chr6 147528502 147528541 -41751013 + AT_rich Low_complexity Low_complexity 1 39 0 187 306 69 14 chr6 147530700 147530772 -41748782 + L2 LINE L2 3187 3262 -10 382 335 103 5 chr6 147531150 147531335 -41748219 + MIR SINE MIR 8 210 -52 1751 163 104 6 chr6 147533419 147533774 -41745780 + MLT1B LTR MaLR 1 390 0 2267 95 0 3 chr6 147533840 147534135 -41745419 + AluSq SINE Alu 20 313 0 22 56 0 0 chr6 147534448 147534484 -41745070 + AT_rich Low_complexity Low_complexity 1 36 0 436 295 163 37 chr6 147535205 147535530 -41744024 + HERVL LTR ERVL 3029 3394 -2260 373 322 44 33 chr6 147535560 147535740 -41743814 + HERVL LTR ERVL 4054 4235 -1419 251 301 34 48 chr6 147536326 147536472 -41743082 + HERVL LTR ERVL 4712 4855 -909 286 286 153 32 chr6 147536708 147536897 -41742657 + HERVL LTR ERVL 5220 5431 -333 219 314 136 17 chr6 147537974 147538092 -41741462 + L2 LINE L2 3177 3308 -5 314 194 16 0 chr6 147538212 147538274 -41741280 - L2 LINE L2 0 3272 3210 377 356 62 7 chr6 147538402 147538548 -41741006 - MIR3 SINE MIR -21 187 34 386 232 268 6 chr6 147538879 147539047 -41740507 + MER58C DNA MER1_type 4 215 0 951 172 50 48 chr6 147539117 147539411 -41740143 + MER2 DNA MER2_type 3 345 0 343 291 183 9 chr6 147540748 147540960 -41738594 + MIR SINE MIR 11 259 -3 503 221 103 14 chr6 147541007 147541056 -41738498 - L1MA10 LINE L1 0 6334 6286 2595 193 81 61 chr6 147541056 147541825 -41737729 - L1ME1 LINE L1 -53 6113 5330 * 5495 224 71 55 chr6 147541824 147542653 -41736901 - L1ME1 LINE L1 -1597 4549 3735 2129 112 3 19 chr6 147542653 147542967 -41736587 - AluSx SINE Alu -3 309 1 5495 224 71 55 chr6 147542967 147543292 -41736262 - L1ME1 LINE L1 -2411 3735 3417 2820 71 3 0 chr6 147543292 147543658 -41735896 + L1PA8 LINE L1 5806 6172 0 5495 224 71 55 chr6 147543658 147544561 -41734993 - L1ME1 LINE L1 -2729 3417 2458 1986 150 3 0 chr6 147544921 147545215 -41734339 + AluSx SINE Alu 1 295 -17 260 217 235 42 chr6 147545240 147545406 -41734148 + L1MC4 LINE L1 7702 7899 -143 4793 64 11 8 chr6 147545414 147546536 -41733018 - MER11A LTR ERVK 0 1266 1 335 252 28 35 chr6 147546556 147546705 -41732849 + L1MC4 LINE L1 7681 7785 0 304 75 0 0 chr6 147547666 147547706 -41731848 - L1PA16 LINE L1 -9 6157 6118 2202 119 44 39 chr6 147547706 147548068 -41731486 - THE1B LTR MaLR 0 364 1 1534 79 8 62 chr6 147548073 147548313 -41731241 - THE1B-int LTR MaLR -6 1574 1348 275 359 30 12 chr6 147548415 147548582 -41730972 - L2 LINE L2 -2600 714 545 555 43 0 0 chr6 147549013 147549083 -41730471 + (CTGTG)n Simple_repeat Simple_repeat 3 72 0 1582 171 11 0 chr6 147550818 147551092 -41728462 - AluSx SINE Alu -5 307 31 270 0 0 0 chr6 147551256 147551286 -41728268 + (CA)n Simple_repeat Simple_repeat 2 31 0 556 213 52 22 chr6 147552071 147552207 -41727347 - ERVL LTR ERVL -2311 3453 3314 697 343 46 8 chr6 147552340 147552749 -41726805 - ERVL LTR ERVL -2139 2857 2676 514 233 33 40 chr6 147553243 147553453 -41726101 + MLT1H LTR MaLR 30 296 -253 225 258 134 10 chr6 147553523 147553620 -41725934 + MLT1H LTR MaLR 439 547 -2 1754 187 34 58 chr6 147553653 147554207 -41725347 - MER67C LTR ERV1 -8 506 1 180 77 0 0 chr6 147555099 147555125 -41724429 + (TTTAG)n Simple_repeat Simple_repeat 3 28 0 275 325 187 5 chr6 147555914 147556117 -41723437 - L2 LINE L2 -842 2472 2233 188 0 74 0 chr6 147556218 147556245 -41723309 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr6 147556334 147556355 -41723199 + AT_rich Low_complexity Low_complexity 1 21 0 506 328 63 30 chr6 147556501 147556864 -41722690 - L2 LINE L2 -1241 2073 1699 1960 186 57 70 chr6 147557214 147557726 -41721828 - MLT1D LTR MaLR 0 505 1 391 288 92 7 chr6 147558553 147558706 -41720848 + L2 LINE L2 994 1159 -2155 991 276 160 26 chr6 147558708 147559231 -41720323 + L2 LINE L2 2723 3312 -1 409 259 33 8 chr6 147559294 147559413 -41720141 + MIR SINE MIR 36 164 -44 2508 112 6 8 chr6 147560012 147560377 -41719177 + THE1B LTR MaLR 1 364 0 776 315 87 39 chr6 147561006 147561712 -41717842 - L2 LINE L2 -86 3227 2482 21 0 0 0 chr6 147562933 147562954 -41716600 + AT_rich Low_complexity Low_complexity 1 21 0 258 325 103 0 chr6 147563328 147563445 -41716109 - MIR3 SINE MIR -6 202 74 1474 223 150 42 chr6 147563558 147564245 -41715309 + L1ME3A LINE L1 5410 6170 0 250 272 158 9 chr6 147564647 147564761 -41714793 + MER117 DNA MER1_type 30 160 -37 39 88 0 0 chr6 147564897 147564999 -41714555 + AT_rich Low_complexity Low_complexity 1 102 0 249 276 122 22 chr6 147565564 147565794 -41713760 + L2 LINE L2 1182 1521 -1793 602 258 109 31 chr6 147565923 147566152 -41713402 + MLT1J LTR MaLR 3 249 -262 2025 292 159 26 chr6 147566172 147567410 -41712144 + L2 LINE L2 1875 3309 -4 403 346 97 55 chr6 147567406 147567747 -41711807 - L3 LINE CR1 -4 1573 1209 * 2141 89 28 7 chr6 147567747 147568038 -41711516 - AluSp SINE Alu -16 297 1 403 346 97 55 chr6 147568038 147568130 -41711424 - L3 LINE CR1 -368 1209 1122 180 135 0 0 chr6 147569135 147569172 -41710382 + (A)n Simple_repeat Simple_repeat 1 37 0 2489 48 7 0 chr6 147569302 147569597 -41709957 + AluY SINE Alu 1 297 -14 205 397 85 14 chr6 147570569 147570710 -41708844 + L2 LINE L2 3117 3267 -5 285 125 21 0 chr6 147570747 147570795 -41708759 + MADE1 DNA Mariner 1 49 -31 252 246 0 0 chr6 147570788 147570849 -41708705 - MADE1 DNA Mariner -17 63 3 * 376 138 0 0 chr6 147570996 147571054 -41708500 - MADE1 DNA Mariner -17 63 6 234 372 8 50 chr6 147571482 147571603 -41707951 - L2 LINE L2 -20 3252 3137 202 321 107 36 chr6 147571984 147572152 -41707402 - MIR SINE MIR -69 193 14 234 0 0 0 chr6 147572633 147572659 -41706895 + (A)n Simple_repeat Simple_repeat 1 26 0 3890 171 18 47 chr6 147572669 147574193 -41705361 + L1PB3 LINE L1 4673 6151 -3 1598 196 40 30 chr6 147574191 147574564 -41704990 - L1MB8 LINE L1 -6 6172 5796 * 1527 179 36 20 chr6 147575404 147575706 -41703848 - AluJb SINE Alu -5 307 1 249 319 176 20 chr6 147575872 147576173 -41703381 - L2 LINE L2 -795 2519 2172 2611 109 0 8 chr6 147576352 147576719 -41702835 - THE1B LTR MaLR 0 364 1 26 50 0 0 chr6 147576937 147576977 -41702577 + AT_rich Low_complexity Low_complexity 1 40 0 688 130 0 0 chr6 147577297 147577405 -41702149 + AluSg/x SINE Alu 200 307 -3 9946 103 30 18 chr6 147577406 147577985 -41701569 - MER57-int LTR ERV1 -2362 5175 4605 2349 74 0 13 chr6 147577985 147578297 -41701257 + AluY SINE Alu 1 308 -3 9946 103 30 18 chr6 147578297 147579616 -41699938 - MER57-int LTR ERV1 -2932 4605 3261 1015 99 12 47 chr6 147579777 147579948 -41699606 - MER57-int LTR ERV1 -3377 2569 2405 340 238 181 38 chr6 147630838 147630998 -41648556 + MIR SINE MIR 3 185 -77 1827 83 0 17 chr6 147631140 147631381 -41648173 + AluSq SINE Alu 1 237 -76 353 212 0 59 chr6 147631464 147631549 -41648005 + AluJ/FRAM SINE Alu 218 297 -5 213 424 52 18 chr6 147631612 147631841 -41647713 - L2 LINE L2 -50 3222 2986 2200 77 45 0 chr6 147631845 147632131 -41647423 + AluSg SINE Alu 1 299 -11 2433 96 3 0 chr6 147632196 147632508 -41647046 + AluSp SINE Alu 1 313 0 338 252 76 8 chr6 147632639 147632758 -41646796 - HAL1 LINE L1 -1199 1308 1182 878 196 43 0 chr6 147632760 147632944 -41646610 - AluJo SINE Alu -1 311 120 1717 224 136 26 chr6 147633288 147633743 -41645811 - MLT1D LTR MaLR 0 505 1 215 161 0 0 chr6 147633831 147633862 -41645692 + L2 LINE L2 3012 3042 -271 756 206 0 34 chr6 147633868 147634014 -41645540 - FLAM_C SINE Alu -1 142 2 2405 92 3 0 chr6 147634029 147634334 -41645220 - AluSp SINE Alu -7 306 1 582 279 106 53 chr6 147634420 147634760 -41644794 - LTR67 LTR ERVL -2 555 198 3366 261 43 16 chr6 147634784 147635889 -41643665 - L1M4 LINE L1 -1409 4737 3603 2088 257 62 75 chr6 147635897 147636958 -41642596 - L1ME LINE L1 -4110 2151 1078 2058 145 3 3 chr6 147636958 147637261 -41642293 - AluSq SINE Alu -10 303 1 2088 257 62 75 chr6 147637261 147637947 -41641607 - L1ME LINE L1 -5183 1078 443 2159 131 0 0 chr6 147637947 147638245 -41641309 - AluSg SINE Alu -6 304 7 2088 257 62 75 chr6 147638245 147638391 -41641163 - L1ME LINE L1 -5818 443 297 3242 69 8 0 chr6 147638391 147638786 -41640768 + MLT2A1 LTR ERVL 1 473 -47 2227 115 0 0 chr6 147638786 147639074 -41640480 + AluSx SINE Alu 1 288 -24 223 109 73 0 chr6 147639083 147639138 -41640416 + (TA)n Simple_repeat Simple_repeat 1 59 0 361 59 20 0 chr6 147639140 147639191 -41640363 + MLT2A1 LTR ERVL 391 442 -2 669 240 54 75 chr6 147639191 147639470 -41640084 - L1ME LINE L1 -5767 303 31 203 185 0 0 chr6 147639471 147639525 -41640029 + MER5C DNA MER1_type 216 269 -55 251 223 85 32 chr6 147639747 147639841 -41639713 + LTR67 LTR ERVL 459 557 0 245 321 105 43 chr6 147640078 147640240 -41639314 - MIR3 SINE MIR -14 194 23 2421 84 0 0 chr6 147640563 147640861 -41638693 + AluSx SINE Alu 1 298 -14 436 111 0 0 chr6 147640892 147640946 -41638608 + AluSq SINE Alu 126 179 -134 443 149 11 23 chr6 147641090 147641177 -41638377 + FLAM_A SINE Alu 57 142 0 2138 98 42 0 chr6 147641820 147642106 -41637448 - AluSg SINE Alu -12 298 1 215 271 34 0 chr6 147642141 147642200 -41637354 - L2 LINE L2 -4 3268 3208 346 213 280 7 chr6 147642284 147642434 -41637120 - MIR SINE MIR -37 225 35 2580 166 47 13 chr6 147642579 147643026 -41636528 + MLT1C LTR MaLR 1 462 -5 541 313 92 9 chr6 147643241 147643468 -41636086 + MIR SINE MIR 16 261 -1 2085 111 34 3 chr6 147643656 147643953 -41635601 + AluSq SINE Alu 1 306 -7 200 297 108 0 chr6 147645252 147645326 -41634228 + L2 LINE L2 3173 3254 -18 2016 74 22 4 chr6 147645516 147645785 -41633769 + AluSq SINE Alu 1 274 -39 193 179 18 18 chr6 147646524 147646580 -41632974 + (CTGGGG)n Simple_repeat Simple_repeat 3 58 0 1978 115 36 13 chr6 147647561 147647866 -41631688 - AluSx SINE Alu 0 312 1 1696 132 52 11 chr6 147649726 147649998 -41629556 - AluSq SINE Alu -30 283 1 263 119 0 24 chr6 147650462 147650504 -41629050 - AluJb SINE Alu -175 127 87 1556 122 144 11 chr6 147650594 147650865 -41628689 - AluSg1 SINE Alu -2 307 1 240 337 33 22 chr6 147651572 147651664 -41627890 + L2 LINE L2 2947 3039 -233 210 150 0 0 chr6 147651943 147651983 -41627571 + (T)n Simple_repeat Simple_repeat 1 40 0 2141 92 10 7 chr6 147652059 147652353 -41627201 + AluSg SINE Alu 1 295 -15 228 264 19 0 chr6 147653225 147653278 -41626276 + CT-rich Low_complexity Low_complexity 2 55 0 2340 85 16 7 chr6 147653557 147653863 -41625691 - AluSg SINE Alu -1 309 1 2408 86 3 6 chr6 147654170 147654483 -41625071 + AluSx SINE Alu 1 312 0 26 0 0 0 chr6 147654622 147654648 -41624906 + AT_rich Low_complexity Low_complexity 1 26 0 2624 48 0 6 chr6 147655289 147655602 -41623952 - AluY SINE Alu 0 311 1 22 0 0 0 chr6 147655724 147655746 -41623808 + AT_rich Low_complexity Low_complexity 1 22 0 242 200 188 35 chr6 147655901 147655986 -41623568 + L2 LINE L2 3201 3298 -15 1845 121 89 11 chr6 147657457 147657738 -41621816 + AluSx SINE Alu 1 303 -9 300 264 0 0 chr6 147657765 147657837 -41621717 + GA-rich Low_complexity Low_complexity 1 72 0 2414 87 0 0 chr6 147657998 147658296 -41621258 + AluSc SINE Alu 1 298 -11 2591 40 0 3 chr6 147658550 147658851 -41620703 + AluY SINE Alu 1 300 -11 24 0 0 0 chr6 147658853 147658877 -41620677 + AT_rich Low_complexity Low_complexity 1 24 0 2282 124 0 0 chr6 147658924 147659230 -41620324 - AluSx SINE Alu -6 306 1 2153 108 0 7 chr6 147659939 147660261 -41619293 - AluSx SINE Alu 0 320 1 284 289 44 11 chr6 147660276 147660366 -41619188 - MIR3 SINE MIR -25 183 91 2165 99 3 3 chr6 147660472 147660755 -41618799 - AluSc SINE Alu -26 283 1 27 62 0 0 chr6 147661599 147661647 -41617907 + AT_rich Low_complexity Low_complexity 1 48 0 542 283 96 17 chr6 147663885 147664115 -41615439 + MIR SINE MIR 15 262 0 21 36 0 0 chr6 147664136 147664164 -41615390 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 147665451 147665472 -41614082 + AT_rich Low_complexity Low_complexity 1 21 0 384 326 14 0 chr6 147665474 147665612 -41613942 + L2 LINE L2 1073 1212 -2102 463 188 18 91 chr6 147665627 147665682 -41613872 - L2 LINE L2 -1840 1474 1417 2510 50 7 3 chr6 147665682 147665984 -41613570 - AluY SINE Alu -8 303 1 463 188 18 91 chr6 147665984 147666093 -41613461 - L2 LINE L2 -1897 1417 1322 3900 261 63 24 chr6 147666116 147666785 -41612769 + L2 LINE L2 1718 2359 -954 2378 99 0 10 chr6 147666785 147667099 -41612455 - AluSx SINE Alu -1 311 1 3900 261 63 24 chr6 147667099 147667746 -41611808 + L2 LINE L2 2359 3082 -231 272 119 0 0 chr6 147667768 147667810 -41611744 - U3 snRNA snRNA -175 42 1 1231 77 0 16 chr6 147667840 147668023 -41611531 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2182 114 14 0 chr6 147668042 147668339 -41611215 - AluSx SINE Alu -11 301 1 289 342 67 0 chr6 147668454 147668574 -41610980 - L2 LINE L2 -213 3059 2932 242 258 0 16 chr6 147668820 147668882 -41610672 - MLT1K LTR MaLR -348 240 180 2094 85 0 0 chr6 147668974 147669244 -41610310 + AluY SINE Alu 41 310 -1 1720 161 0 27 chr6 147669256 147669581 -41609973 + AluJb SINE Alu 1 317 0 273 247 274 27 chr6 147669633 147669779 -41609775 + LTR33 LTR ERVL 38 219 -302 571 276 24 18 chr6 147669822 147669992 -41609562 + LTR33 LTR ERVL 351 521 0 1159 178 45 98 chr6 147672412 147672649 -41606905 + MER33 DNA MER1_type 2 217 -2368 1746 132 39 0 chr6 147672649 147672906 -41606648 + AluSx SINE Alu 1 267 -45 1159 178 45 98 chr6 147672906 147673005 -41606549 + MER33 DNA MER1_type 217 320 -4 2098 126 16 10 chr6 147673074 147673384 -41606170 + AluSx SINE Alu 1 312 0 395 252 15 67 chr6 147673417 147673552 -41606002 + MER5A DNA MER1_type 61 188 -1 1489 165 44 11 chr6 147673739 147674012 -41605542 - L1MA8 LINE L1 -5 6286 6005 633 179 154 0 chr6 147674370 147674487 -41605067 - AluJo SINE Alu -176 136 2 675 265 63 38 chr6 147674944 147675182 -41604372 - MIR SINE MIR -2 260 17 256 171 0 0 chr6 147676733 147676774 -41602780 + MER5A DNA MER1_type 1 41 -148 1194 206 101 55 chr6 147676776 147677016 -41602538 + MLT2B1 LTR ERVL 10 238 -277 2099 129 0 0 chr6 147677016 147677302 -41602252 + AluSx SINE Alu 1 286 -26 209 95 0 24 chr6 147677307 147677349 -41602205 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 1194 206 101 55 chr6 147677349 147677566 -41601988 + MLT2B1 LTR ERVL 241 515 0 7839 41 0 3 chr6 147677610 147678717 -41600837 - L1PA4 LINE L1 -2 6153 5047 888 37 0 0 chr6 147678717 147678826 -41600728 + L1P LINE L1 4662 4770 -1376 352 259 47 0 chr6 147678835 147678920 -41600634 + MER5A DNA MER1_type 101 189 0 258 32 0 0 chr6 147679183 147679214 -41600340 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 313 262 86 53 chr6 147679218 147679350 -41600204 - L2 LINE L2 -18 3295 3154 1130 201 94 73 chr6 147679350 147679679 -41599875 + MER46C DNA MER2_type 3 338 0 313 262 86 53 chr6 147679679 147679733 -41599821 - L2 LINE L2 -159 3154 3103 2188 113 10 0 chr6 147680677 147680977 -41598577 - AluSx SINE Alu -9 303 1 301 353 26 26 chr6 147681284 147681440 -41598114 - L3 LINE CR1 -437 1140 985 460 98 0 0 chr6 147682781 147682842 -41596712 - AluSg SINE Alu -17 294 234 1290 122 0 11 chr6 147682842 147683022 -41596532 - AluSg SINE Alu -131 179 2 1877 138 0 47 chr6 147683268 147683590 -41595964 + AluSx SINE Alu 1 308 0 1523 167 24 31 chr6 147683617 147683911 -41595643 + AluJb SINE Alu 6 297 -15 207 0 0 0 chr6 147683912 147683935 -41595619 + (TA)n Simple_repeat Simple_repeat 2 24 0 2211 123 0 3 chr6 147685595 147685896 -41593658 - AluSg SINE Alu -10 300 1 1021 239 32 0 chr6 147686446 147686693 -41592861 + MER34 LTR ERV1 11 265 -277 1918 124 32 90 chr6 147686727 147687161 -41592393 + MSTB1 LTR MaLR 24 432 0 576 212 11 2 chr6 147687175 147687355 -41592199 + MER34 LTR ERV1 315 539 -3 1110 108 0 0 chr6 147688000 147688158 -41591396 + AluY SINE Alu 150 307 -4 241 284 45 34 chr6 147688253 147688341 -41591213 - L2 LINE L2 -2 3270 3182 519 254 133 18 chr6 147688400 147688565 -41590989 + MIR SINE MIR 28 211 -51 241 212 61 83 chr6 147688786 147688918 -41590636 + MER5A DNA MER1_type 13 141 -48 182 317 21 97 chr6 147688950 147689095 -41590459 - L2 LINE L2 -203 3069 2936 263 282 23 92 chr6 147689585 147689716 -41589838 + L2 LINE L2 3190 3311 -2 21 36 0 0 chr6 147691817 147691845 -41587709 + AT_rich Low_complexity Low_complexity 1 28 0 277 312 127 32 chr6 147692052 147692209 -41587345 - L3 LINE CR1 -859 718 547 191 333 32 0 chr6 147692317 147692380 -41587174 - L3 LINE CR1 -1037 540 476 184 271 0 34 chr6 147693381 147693440 -41586114 - L2 LINE L2 0 3313 3257 2411 95 0 6 chr6 147693537 147693852 -41585702 - AluSq SINE Alu 0 313 1 1978 135 0 17 chr6 147694507 147694519 -41585035 - AluSx SINE Alu -19 293 282 186 71 0 0 chr6 147694519 147694547 -41585007 + (TTTAG)n Simple_repeat Simple_repeat 2 29 0 1978 135 0 17 chr6 147694547 147694831 -41584723 - AluSx SINE Alu -30 282 2 309 328 34 0 chr6 147694834 147694953 -41584601 - MIR SINE MIR -48 214 92 1453 172 0 23 chr6 147696323 147696584 -41582970 + AluJb SINE Alu 54 308 -4 315 0 0 0 chr6 147696613 147696648 -41582906 + (CA)n Simple_repeat Simple_repeat 2 36 0 343 250 198 9 chr6 147696963 147697079 -41582475 - MER5A DNA MER1_type -26 163 26 224 311 68 29 chr6 147697734 147697837 -41581717 + MIR SINE MIR 12 118 -144 207 355 21 43 chr6 147698843 147699029 -41580525 - L2 LINE L2 -578 2736 2555 230 213 0 12 chr6 147699966 147700046 -41579508 + CT-rich Low_complexity Low_complexity 2 80 0 851 303 128 35 chr6 147701095 147701203 -41578351 + L2 LINE L2 1511 1607 -1707 1740 202 0 6 chr6 147701203 147701515 -41578039 - AluJo SINE Alu -2 310 1 851 303 128 35 chr6 147701515 147701865 -41577689 + L2 LINE L2 1607 2012 -1302 1504 271 142 13 chr6 147701865 147702688 -41576866 + L2 LINE L2 2328 3312 -1 298 291 118 24 chr6 147703061 147703188 -41576366 + MIR SINE MIR 53 191 -71 361 192 50 108 chr6 147703196 147703316 -41576238 + L2 LINE L2 3200 3312 -1 228 296 25 0 chr6 147703300 147703381 -41576173 + MIR SINE MIR 172 254 -8 * 1576 187 40 4 chr6 147703383 147703661 -41575893 + AluJo SINE Alu 4 291 -21 204 248 257 44 chr6 147704145 147704258 -41575296 + MIR3 SINE MIR 5 141 -67 1873 147 65 31 chr6 147704336 147704689 -41574865 + MLT1A1 LTR MaLR 1 365 0 39 38 0 0 chr6 147705744 147705797 -41573757 + AT_rich Low_complexity Low_complexity 1 53 0 715 299 66 33 chr6 147705956 147706502 -41573052 - L1ME4a LINE L1 -28 6093 5530 252 0 0 0 chr6 147706550 147706578 -41572976 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 342 244 47 8 chr6 147706909 147707036 -41572518 - L1MC4 LINE L1 0 8042 7911 273 146 0 0 chr6 147707043 147707091 -41572463 + (TA)n Simple_repeat Simple_repeat 2 49 0 279 310 8 8 chr6 147707114 147707243 -41572311 - L1MC4 LINE L1 -150 7892 7764 21 57 0 0 chr6 147707243 147707278 -41572276 + AT_rich Low_complexity Low_complexity 1 35 0 2251 113 0 0 chr6 147707278 147707569 -41571985 - AluSq SINE Alu -22 291 1 415 116 74 18 chr6 147708400 147708502 -41571052 + MER61E LTR ERV1 1 112 -484 273 203 0 0 chr6 147708583 147708642 -41570912 + LTR28 LTR ERV1 144 202 -818 234 222 175 0 chr6 147708647 147708710 -41570844 + MER51A LTR ERV1 208 281 -353 553 241 34 12 chr6 147708766 147709008 -41570546 + MER61D LTR ERV1 335 1232 -29 1857 174 3 7 chr6 147710723 147711021 -41568533 - AluSx SINE Alu -15 297 1 21 0 0 0 chr6 147712325 147712346 -41567208 + AT_rich Low_complexity Low_complexity 1 21 0 218 349 63 31 chr6 147713059 147713209 -41566345 - MIR SINE MIR -58 150 16 2316 107 0 0 chr6 147713343 147713641 -41565913 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr6 147714188 147714209 -41565345 + AT_rich Low_complexity Low_complexity 1 21 0 498 266 100 79 chr6 147715553 147715782 -41563772 - MIR SINE MIR -27 235 2 185 337 124 0 chr6 147715882 147715971 -41563583 + L2 LINE L2 3104 3203 -69 576 244 84 57 chr6 147716307 147716535 -41563019 + L1MC5 LINE L1 7360 7605 -356 1435 178 70 4 chr6 147716535 147716805 -41562749 + AluJb SINE Alu 1 288 -24 576 244 84 57 chr6 147716805 147716982 -41562572 + L1MC5 LINE L1 7605 7776 -185 615 287 65 24 chr6 147717232 147717731 -41561823 - MLT1G1 LTR MaLR -5 590 10 2573 47 0 0 chr6 147717832 147718131 -41561423 - AluY SINE Alu -10 301 3 206 274 113 16 chr6 147718865 147718927 -41560627 - L2 LINE L2 0 3272 3205 380 312 127 17 chr6 147718983 147719156 -41560398 - L2 LINE L2 -177 3095 2904 741 178 0 0 chr6 147719379 147719508 -41560046 + FLAM_C SINE Alu 11 139 -4 24 32 0 0 chr6 147719511 147719542 -41560012 + AT_rich Low_complexity Low_complexity 1 31 0 183 296 106 53 chr6 147719615 147719899 -41559655 - L2 LINE L2 -707 2607 2309 183 156 0 0 chr6 147720615 147720647 -41558907 + (CAG)n Simple_repeat Simple_repeat 1 32 0 547 270 38 19 chr6 147720658 147720817 -41558737 - MIR SINE MIR -31 231 70 7522 129 6 29 chr6 147721506 147722876 -41556678 - L1P LINE L1 -3597 2549 1211 1197 69 0 13 chr6 147722880 147723039 -41556515 + L1PA8 LINE L1 6010 6166 -6 2672 10 0 3 chr6 147723348 147723645 -41555909 - AluYa5 SINE Alu -15 296 1 2219 131 0 0 chr6 147723795 147724092 -41555462 + AluSx SINE Alu 1 297 -15 2394 55 10 0 chr6 147724268 147724558 -41554996 + AluY SINE Alu 1 293 -18 2218 100 28 0 chr6 147727503 147727793 -41551761 + AluY SINE Alu 1 298 -13 385 321 57 7 chr6 147727965 147728105 -41551449 - MIR SINE MIR -93 169 23 1761 125 81 0 chr6 147729680 147729952 -41549602 + AluSx SINE Alu 1 294 -18 1728 175 10 10 chr6 147730881 147731189 -41548365 + AluJb SINE Alu 1 308 -4 970 148 49 38 chr6 147731233 147731416 -41548138 + MER5A DNA MER1_type 2 186 -3 2109 118 0 0 chr6 147731974 147732263 -41547291 - AluSx SINE Alu -19 293 5 402 21 0 0 chr6 147733160 147733207 -41546347 + (CA)n Simple_repeat Simple_repeat 2 48 0 326 242 47 31 chr6 147735043 147735171 -41544383 - MLT1L LTR MaLR -8 607 478 1977 142 10 6 chr6 147735280 147735614 -41543940 - AluSx SINE Alu 0 312 1 1744 46 0 5 chr6 147735968 147736184 -41543370 + L1PA7 LINE L1 5938 6152 -2 7938 108 13 0 chr6 147736192 147737308 -41542246 - HSMAR1 DNA Mariner -13 1274 144 43 64 0 0 chr6 147737308 147737386 -41542168 + AT_rich Low_complexity Low_complexity 1 78 0 791 123 0 0 chr6 147737391 147737513 -41542041 - HSMAR1 DNA Mariner -1165 122 1 231 313 31 0 chr6 147737662 147737726 -41541828 + L2 LINE L2 3239 3304 -9 24 32 0 0 chr6 147738034 147738065 -41541489 + AT_rich Low_complexity Low_complexity 1 31 0 1232 214 122 7 chr6 147739368 147739639 -41539915 - AluJb SINE Alu 0 302 1 813 279 54 41 chr6 147739639 147740026 -41539528 - L2 LINE L2 -595 2719 2328 539 323 9 70 chr6 147740033 147740262 -41539292 + MIR SINE MIR 20 234 -28 190 269 84 67 chr6 147740447 147740566 -41538988 + L2 LINE L2 3192 3312 -1 389 283 44 40 chr6 147740646 147740872 -41538682 + HAL1 LINE L1 1410 1636 -871 23 54 0 0 chr6 147740924 147740961 -41538593 + AT_rich Low_complexity Low_complexity 1 37 0 329 269 45 8 chr6 147741739 147741873 -41537681 + L1ME4a LINE L1 5978 6116 -5 488 234 55 50 chr6 147743706 147743907 -41535647 + MER112 DNA MER1_type 1 202 -58 2194 96 0 7 chr6 147743976 147744281 -41535273 - AluSq SINE Alu 0 308 6 217 273 30 20 chr6 147744352 147744451 -41535103 + A-rich Low_complexity Low_complexity 3 102 0 420 300 76 51 chr6 147744634 147744982 -41534572 + MLT1H LTR MaLR 72 404 -5 329 252 0 137 chr6 147745366 147745441 -41534113 + L2 LINE L2 3199 3250 -63 2395 67 0 16 chr6 147745441 147745757 -41533797 + AluY SINE Alu 1 311 0 329 252 0 137 chr6 147745757 147745812 -41533742 + L2 LINE L2 3250 3311 -2 1588 141 25 113 chr6 147746644 147746971 -41532583 - AluJb SINE Alu -11 301 4 380 217 130 0 chr6 147746973 147747065 -41532489 + L2 LINE L2 3208 3311 -2 2572 178 22 10 chr6 147747581 147748076 -41531478 + MER67C LTR ERV1 5 505 -205 259 182 0 0 chr6 147748076 147748120 -41531434 - MLT2D LTR ERVL 0 414 371 1604 148 36 56 chr6 147748122 147748425 -41531129 + MLT1A1 LTR MaLR 3 299 -66 1496 203 102 46 chr6 147748425 147748864 -41530690 - MLT2B1 LTR ERVL -56 464 1 1030 144 123 0 chr6 147748864 147749051 -41530503 + MER67C LTR ERV1 501 710 0 2099 160 23 18 chr6 147749269 147749657 -41529897 - MLT1B LTR MaLR 0 390 1 233 340 0 0 chr6 147750013 147750107 -41529447 + MIR3 SINE MIR 113 206 -2 189 107 0 0 chr6 147750107 147750135 -41529419 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 190 284 80 68 chr6 147750163 147750251 -41529303 - L2 LINE L2 -35 3278 3190 643 228 28 7 chr6 147751209 147751354 -41528200 - MER58A DNA MER1_type -30 194 47 265 319 125 7 chr6 147752357 147752501 -41527053 - MIR SINE MIR -6 256 96 2102 98 7 7 chr6 147752627 147752912 -41526642 + AluSc SINE Alu 6 290 -19 194 316 0 0 chr6 147753359 147753416 -41526138 + MIR SINE MIR 201 257 -5 345 240 16 8 chr6 147754081 147754210 -41525344 + GA-rich Low_complexity Low_complexity 3 132 0 277 372 49 26 chr6 147754211 147754437 -41525117 - MIR SINE MIR -20 242 12 22 0 0 30 chr6 147754449 147754466 -41525088 + AT_rich Low_complexity Low_complexity 1 18 -14 1992 157 0 3 chr6 147754466 147754766 -41524788 + AluJb SINE Alu 1 299 -13 22 0 0 30 chr6 147754766 147754781 -41524773 + AT_rich Low_complexity Low_complexity 18 32 0 826 265 67 48 chr6 147756502 147756853 -41522701 + MLT1I LTR MaLR 51 409 0 1487 156 16 62 chr6 147756894 147757202 -41522352 - AluJo SINE Alu -16 296 3 1941 160 2 115 chr6 147757308 147757753 -41521801 - MER47B DNA MER2_type -20 398 4 2280 129 21 8 chr6 147757819 147758198 -41521356 - L1PA16 LINE L1 -14 6152 5769 24 0 0 0 chr6 147758686 147758710 -41520844 + AT_rich Low_complexity Low_complexity 1 24 0 1210 185 58 0 chr6 147759475 147759718 -41519836 - Tigger2 DNA MER2_type 0 2718 2462 * 4284 151 30 8 chr6 147759712 147760449 -41519105 - Tigger2 DNA MER2_type -1965 753 1 1869 37 0 5 chr6 147760703 147760921 -41518633 - AluY SINE Alu -94 217 1 2349 90 0 7 chr6 147761267 147761577 -41517977 + AluSc SINE Alu 2 309 0 1807 166 24 34 chr6 147761991 147762131 -41517423 - L1 LINE L1 -1170 4976 4836 2037 161 86 8 chr6 147762131 147762528 -41517026 - MSTA LTR MaLR 0 428 1 1807 166 24 34 chr6 147762528 147762666 -41516888 - L1 LINE L1 -1310 4836 4701 186 43 0 0 chr6 147762666 147762689 -41516865 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1807 166 24 34 chr6 147762689 147762824 -41516730 - L1 LINE L1 -1445 4701 4566 5793 106 25 3 chr6 147762826 147763982 -41515572 + L1PA16 LINE L1 4992 6157 -9 21 36 0 0 chr6 147764201 147764229 -41515325 + AT_rich Low_complexity Low_complexity 1 28 0 2119 87 7 42 chr6 147764442 147764752 -41514802 + AluSp SINE Alu 1 299 -14 1123 243 118 69 chr6 147765038 147765545 -41514009 + MLT1F LTR MaLR 11 542 0 2075 139 75 3 chr6 147766325 147766684 -41512870 - MLT1B LTR MaLR -3 387 3 551 194 23 0 chr6 147768519 147768648 -41510906 + L1MA7 LINE L1 6159 6290 -1 29 47 0 0 chr6 147768654 147768697 -41510857 + AT_rich Low_complexity Low_complexity 1 43 0 284 214 43 0 chr6 147769308 147769378 -41510176 + L2 LINE L2 2584 2656 -658 2268 277 119 47 chr6 147769429 147770017 -41509537 + HAL1 LINE L1 2 547 -1960 895 130 15 80 chr6 147770017 147770155 -41509399 - MER53 DNA DNA 0 189 66 2144 99 7 3 chr6 147770155 147770448 -41509106 + AluSx SINE Alu 1 294 -18 895 130 15 80 chr6 147770448 147770509 -41509045 - MER53 DNA DNA -123 66 3 2268 277 119 47 chr6 147770509 147771109 -41508445 + HAL1 LINE L1 547 1275 -1232 1008 283 67 10 chr6 147771148 147771537 -41508017 + HAL1 LINE L1 1468 1878 -629 380 265 86 13 chr6 147771557 147771708 -41507846 + HAL1 LINE L1 1709 1870 -637 24 0 0 0 chr6 147772088 147772112 -41507442 + AT_rich Low_complexity Low_complexity 1 24 0 612 276 96 8 chr6 147772112 147772351 -41507203 + MER46C DNA MER2_type 6 265 -73 31 0 0 0 chr6 147772634 147772665 -41506889 + AT_rich Low_complexity Low_complexity 1 31 0 1983 121 11 0 chr6 147772883 147773156 -41506398 - AluSx SINE Alu -16 296 21 255 61 0 0 chr6 147773261 147773294 -41506260 + (CA)n Simple_repeat Simple_repeat 2 34 0 642 366 98 44 chr6 147773498 147774699 -41504855 + L2 LINE L2 1969 3247 -25 1918 125 13 36 chr6 147775705 147776010 -41503544 + AluSx SINE Alu 1 298 -14 558 202 44 60 chr6 147776010 147776193 -41503361 + MER53 DNA DNA 10 189 0 1673 168 31 25 chr6 147778567 147778853 -41500701 + AluJo SINE Alu 5 292 -20 2162 120 3 0 chr6 147778861 147779152 -41500402 + AluSp SINE Alu 1 292 -21 7767 172 88 10 chr6 147779171 147779832 -41499722 + L1M4c LINE L1 5 613 -5771 191 35 0 35 chr6 147779832 147779861 -41499693 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7767 172 88 10 chr6 147779861 147780749 -41498805 + L1M4c LINE L1 613 1675 -4709 318 106 0 0 chr6 147780769 147780816 -41498738 + (GGGGA)n Simple_repeat Simple_repeat 4 50 0 2250 92 0 7 chr6 147780816 147781108 -41498446 + AluY SINE Alu 5 294 -17 270 143 0 0 chr6 147781127 147781176 -41498378 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 229 406 52 5 chr6 147781243 147781435 -41498119 - L2 LINE L2 -576 2738 2538 208 189 0 0 chr6 147782384 147782421 -41497133 - L2 LINE L2 -324 2989 2953 25 0 0 0 chr6 147784289 147784314 -41495240 + AT_rich Low_complexity Low_complexity 1 25 0 1115 126 0 48 chr6 147785361 147785568 -41493986 + L1 LINE L1 3972 4168 -1978 * 2650 193 16 2 chr6 147785567 147786070 -41493484 + L1MA2 LINE L1 8 517 -7048 1741 153 65 14 chr6 147786070 147786424 -41493130 + MER1B DNA MER1_type 1 339 0 3998 184 20 4 chr6 147786425 147787132 -41492422 + L1MA2 LINE L1 511 1228 -6337 14681 156 31 13 chr6 147787133 147790937 -41488617 + L1MA2 LINE L1 2971 6890 -833 2175 119 3 0 chr6 147790937 147791231 -41488323 + AluSq SINE Alu 3 297 -16 14681 156 31 13 chr6 147791231 147792081 -41487473 + L1MA2 LINE L1 6890 7723 0 725 269 14 27 chr6 147792596 147792819 -41486735 + L2 LINE L2 2464 2683 -631 814 251 58 159 chr6 147792821 147793374 -41486180 + L2 LINE L2 2817 3313 0 1850 136 39 3 chr6 147793380 147793666 -41485888 + AluSx SINE Alu 1 296 -16 2055 126 0 3 chr6 147794035 147794340 -41485214 - AluSx SINE Alu 0 304 1 5640 56 1 0 chr6 147794371 147795065 -41484489 - L1PA7 LINE L1 -8 6146 5452 252 200 20 0 chr6 147795489 147795539 -41484015 + MIR3 SINE MIR 158 208 0 21 0 0 0 chr6 147795946 147795967 -41483587 + AT_rich Low_complexity Low_complexity 1 21 0 437 167 0 44 chr6 147796034 147796124 -41483430 - L1PB4 LINE L1 0 6156 6071 2288 119 3 0 chr6 147796130 147796440 -41483114 - AluSp SINE Alu -2 311 1 1767 189 0 0 chr6 147796843 147797140 -41482414 + AluJb SINE Alu 1 297 -15 1026 208 156 7 chr6 147798223 147798492 -41481062 - MLT1C LTR MaLR -3 464 156 365 189 77 98 chr6 147798506 147798552 -41481002 + L1MCa LINE L1 575 620 -5806 1833 115 0 4 chr6 147798552 147798812 -41480742 - AluSq SINE Alu -7 306 48 365 189 77 98 chr6 147798812 147798908 -41480646 + L1MCa LINE L1 620 714 -5712 695 171 8 0 chr6 147798910 147799039 -41480515 - MLT1C LTR MaLR -314 153 24 22 35 0 0 chr6 147799075 147799104 -41480450 + AT_rich Low_complexity Low_complexity 1 29 0 1144 268 55 18 chr6 147799198 147799635 -41479919 - MLT1F1 LTR MaLR -11 556 104 921 227 83 18 chr6 147800238 147800516 -41479038 + L1MCa LINE L1 28 323 -6103 695 216 62 77 chr6 147800520 147800793 -41478761 + L1MCa LINE L1 486 754 -5672 1850 107 7 60 chr6 147800864 147801190 -41478364 + AluSx SINE Alu 1 310 0 3666 176 48 79 chr6 147801882 147802779 -41476775 - MER21A LTR ERV1 -28 903 35 1391 164 25 104 chr6 147803206 147803524 -41476030 - AluJo SINE Alu -9 293 1 2199 108 0 3 chr6 147804215 147804547 -41475007 - AluSq SINE Alu 0 331 1 1881 104 0 94 chr6 147804584 147804808 -41474746 + AluSx SINE Alu 6 191 -121 4328 203 20 22 chr6 147804808 147805765 -41473789 - LTR5 LTR ERVK -14 955 1 1881 104 0 94 chr6 147805765 147805868 -41473686 + AluSx SINE Alu 191 302 -10 2490 170 51 24 chr6 147806067 147806573 -41472981 - MLT2B1 LTR ERVL 0 520 1 535 225 0 36 chr6 147808004 147808142 -41471412 - MER112 DNA MER1_type -7 253 121 23 78 0 0 chr6 147808158 147808209 -41471345 + AT_rich Low_complexity Low_complexity 1 51 0 5670 126 7 4 chr6 147809440 147810408 -41469146 - L1PA15 LINE L1 -1 6164 5195 2005 144 3 13 chr6 147811134 147811447 -41468107 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr6 147813403 147813426 -41466128 + AT_rich Low_complexity Low_complexity 1 23 0 205 164 86 49 chr6 147813426 147813487 -41466067 + MIR SINE MIR 98 164 -65 349 263 67 46 chr6 147813562 147813756 -41465798 + L3 LINE CR1 1196 1393 -184 185 243 0 0 chr6 147813990 147814027 -41465527 + L2 LINE L2 3218 3254 -18 190 244 44 78 chr6 147814328 147814418 -41465136 - L3 LINE CR1 -294 1283 1197 242 358 73 2 chr6 147815274 147815426 -41464128 - MIR SINE MIR -19 189 30 2256 102 0 3 chr6 147815654 147815947 -41463607 - AluSx SINE Alu -20 292 1 1779 169 18 0 chr6 147815958 147816242 -41463312 - AluJo SINE Alu -23 289 1 249 73 0 0 chr6 147816391 147816432 -41463122 - AluSx SINE Alu 0 308 268 1532 123 5 0 chr6 147816432 147816636 -41462918 - AluSx SINE Alu -107 205 1 1929 157 33 2 chr6 147816636 147818101 -41461453 + L1PA16 LINE L1 4583 6157 -9 299 335 198 27 chr6 147819455 147819712 -41459842 - L3 LINE CR1 -86 1491 1191 3257 248 101 78 chr6 147821078 147821455 -41458099 + L2 LINE L2 1242 1609 -1705 1933 154 0 7 chr6 147821455 147821768 -41457786 - AluSx SINE Alu 0 311 1 2235 120 0 0 chr6 147821768 147822067 -41457487 - AluSx SINE Alu -13 299 1 3257 248 101 78 chr6 147822067 147823142 -41456412 + L2 LINE L2 1609 2745 -569 2213 101 3 3 chr6 147823142 147823460 -41456094 + AluSp SINE Alu 1 318 0 3257 248 101 78 chr6 147823460 147823699 -41455855 + L2 LINE L2 2745 2977 -337 377 134 15 0 chr6 147824083 147824150 -41455404 - AluSp SINE Alu -115 188 121 2967 113 0 101 chr6 147824150 147824771 -41454783 - L1P LINE L1 -759 5387 4830 1829 173 0 3 chr6 147824997 147825281 -41454273 - AluJb SINE Alu -12 300 18 249 219 188 0 chr6 147825773 147825837 -41453717 + L2 LINE L2 3196 3271 -1 2440 57 3 0 chr6 147826042 147826360 -41453194 + AluY SINE Alu 1 311 0 2281 119 7 0 chr6 147826818 147827128 -41452426 + AluSx SINE Alu 1 312 0 432 163 22 33 chr6 147829111 147829203 -41450351 - MER63 DNA MER1_type 0 1060 970 2129 132 0 0 chr6 147829203 147829506 -41450048 - AluSx SINE Alu -9 303 1 429 213 19 19 chr6 147829532 147829640 -41449914 - MER63 DNA MER1_type -328 734 1 364 260 142 7 chr6 147830013 147830166 -41449388 - MIR SINE MIR -50 212 39 770 73 0 0 chr6 147831214 147831323 -41448231 + L1MA3 LINE L1 6197 6305 0 2053 136 3 16 chr6 147831326 147831642 -41447912 + AluSx SINE Alu 1 312 0 1083 148 0 7 chr6 147832774 147832929 -41446625 + FRAM SINE Alu 1 154 -22 786 269 104 59 chr6 147833099 147833608 -41445946 + MLT1H LTR MaLR 13 544 -5 2017 129 23 16 chr6 147834348 147834480 -41445074 + AluSx SINE Alu 1 131 -181 183 80 0 0 chr6 147834480 147834505 -41445049 + (TA)n Simple_repeat Simple_repeat 2 26 0 2017 129 23 16 chr6 147834505 147834682 -41444872 + AluSx SINE Alu 131 312 0 239 0 32 0 chr6 147834986 147835017 -41444537 + (TG)n Simple_repeat Simple_repeat 2 33 0 1085 233 60 23 chr6 147835844 147836145 -41443409 + MLT1F1 LTR MaLR 1 312 -255 592 270 31 6 chr6 147836147 147836310 -41443244 + MIR SINE MIR 75 241 -21 213 67 44 22 chr6 147836933 147836978 -41442576 + CT-rich Low_complexity Low_complexity 1 46 0 1846 121 81 4 chr6 147837043 147837315 -41442239 - AluY SINE Alu -18 293 1 504 280 186 42 chr6 147837607 147837660 -41441894 + Charlie7 DNA MER1_type 101 145 -2467 2195 120 0 3 chr6 147837660 147837969 -41441585 + AluSx SINE Alu 1 308 -4 504 280 186 42 chr6 147837969 147838269 -41441285 + Charlie7 DNA MER1_type 145 505 -2107 22 0 0 0 chr6 147838479 147838501 -41441053 + AT_rich Low_complexity Low_complexity 1 22 0 1683 168 27 10 chr6 147838882 147839174 -41440380 + AluJo SINE Alu 1 297 -15 2126 121 16 3 chr6 147839359 147839665 -41439889 - AluSx SINE Alu -2 310 1 27 49 0 0 chr6 147840033 147840074 -41439480 + AT_rich Low_complexity Low_complexity 1 41 0 1671 255 115 18 chr6 147840212 147840882 -41438672 + L2 LINE L2 1593 2327 -987 2231 136 3 0 chr6 147841988 147842333 -41437221 - AluSg SINE Alu 0 346 1 294 204 23 80 chr6 147842762 147842850 -41436704 + L2 LINE L2 3196 3278 -35 261 167 0 0 chr6 147842930 147842984 -41436570 + CT-rich Low_complexity Low_complexity 3 56 0 2322 94 0 7 chr6 147843145 147843452 -41436102 + AluSx SINE Alu 1 305 -7 294 255 41 31 chr6 147843933 147844031 -41435523 - MIR3 SINE MIR -10 198 100 1876 184 0 3 chr6 147844156 147844466 -41435088 - AluJb SINE Alu -3 309 1 2148 130 0 0 chr6 147845372 147845680 -41433874 + AluSx SINE Alu 5 312 0 275 117 67 17 chr6 147846780 147846840 -41432714 + MER116 DNA Mariner 15 77 -3 611 176 84 30 chr6 147847925 147848056 -41431498 + MIR SINE MIR 11 148 -114 520 204 3 1 chr6 147848428 147848558 -41430996 + L1MD1 LINE L1 5482 5616 -548 26 74 0 0 chr6 147848983 147849037 -41430517 + AT_rich Low_complexity Low_complexity 1 54 0 1982 103 48 4 chr6 147850227 147850532 -41429022 - AluSx SINE Alu 0 317 1 2077 169 133 55 chr6 147850611 147850725 -41428829 + L1MD1 LINE L1 5593 5697 -545 207 0 0 0 chr6 147850725 147850748 -41428806 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2077 169 133 55 chr6 147850748 147851236 -41428318 + L1MD1 LINE L1 5697 6242 0 2240 99 31 0 chr6 147851564 147851856 -41427698 - AluSc SINE Alu -8 301 1 377 294 163 15 chr6 147852561 147852904 -41426650 + L2 LINE L2 2354 2747 -567 677 308 88 26 chr6 147852982 147853290 -41426264 + L2 LINE L2 2987 3313 0 2241 110 0 7 chr6 147854446 147854746 -41424808 + AluSx SINE Alu 3 300 -12 24 77 0 0 chr6 147855353 147855405 -41424149 + AT_rich Low_complexity Low_complexity 1 52 0 204 125 0 0 chr6 147855492 147855524 -41424030 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 333 369 11 28 chr6 147855629 147855800 -41423754 + MIR SINE MIR 24 192 -66 2406 108 0 0 chr6 147855800 147856106 -41423448 + AluSq SINE Alu 1 306 -7 22 35 0 0 chr6 147856445 147856474 -41423080 + AT_rich Low_complexity Low_complexity 1 29 0 465 299 146 6 chr6 147857506 147857670 -41421884 - MIR SINE MIR -29 233 47 2009 144 0 7 chr6 147858617 147858909 -41420645 + AluSx SINE Alu 1 290 -22 1946 190 6 8 chr6 147858985 147859349 -41420205 + MLT1A1 LTR MaLR 1 363 -2 200 35 35 0 chr6 147859672 147859701 -41419853 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 956 158 0 0 chr6 147859912 147860045 -41419509 + FRAM SINE Alu 1 132 -44 400 289 117 0 chr6 147860698 147860826 -41418728 - MER5A DNA MER1_type -1 188 46 255 263 61 0 chr6 147860828 147860927 -41418627 - HERVL40 LTR ERVL -1768 3762 3658 1797 147 0 67 chr6 147860930 147861244 -41418310 + AluSx SINE Alu 3 295 -17 2140 96 0 3 chr6 147861422 147861727 -41417827 + AluY SINE Alu 1 304 0 1759 173 107 10 chr6 147861889 147862299 -41417255 - LTR7 LTR ERV1 0 450 1 21 36 0 0 chr6 147862438 147862466 -41417088 + AT_rich Low_complexity Low_complexity 1 28 0 2356 129 22 3 chr6 147863714 147864071 -41415483 - THE1B LTR MaLR 0 364 1 1539 164 8 22 chr6 147864082 147864350 -41415204 - AluJo SINE Alu -9 303 40 2254 89 38 3 chr6 147864556 147864848 -41414706 - AluSg SINE Alu -6 304 3 24 53 0 0 chr6 147865052 147865090 -41414464 + AT_rich Low_complexity Low_complexity 1 38 0 2303 114 0 0 chr6 147865467 147865775 -41413779 + AluSg SINE Alu 1 308 -2 198 393 119 0 chr6 147865779 147865863 -41413691 - L2 LINE L2 -221 3051 2958 2179 130 0 0 chr6 147865896 147866196 -41413358 + AluSx SINE Alu 1 300 -12 1292 127 21 8 chr6 147866256 147866493 -41413061 - L1MA8 LINE L1 0 6291 6052 2274 122 0 0 chr6 147866768 147867064 -41412490 - AluSx SINE Alu -15 297 2 2010 126 3 20 chr6 147867173 147867466 -41412088 - AluSx SINE Alu -24 288 1 330 315 129 37 chr6 147868140 147868442 -41411112 + L1MC4a LINE L1 4934 5252 -894 282 196 149 34 chr6 147868450 147868598 -41410956 + L1MC4a LINE L1 5293 5457 -2351 860 241 103 47 chr6 147868614 147869007 -41410547 + L1MC4a LINE L1 5533 5815 -351 180 111 0 0 chr6 147869033 147869060 -41410494 + (A)n Simple_repeat Simple_repeat 1 27 0 294 50 0 0 chr6 147869109 147869149 -41410405 + (TG)n Simple_repeat Simple_repeat 2 41 0 857 150 0 8 chr6 147869769 147869944 -41409610 + FLAM_C SINE Alu 2 175 0 2430 51 0 32 chr6 147870255 147870566 -41408988 + AluY SINE Alu 2 302 -9 2526 78 0 0 chr6 147871870 147872179 -41407375 + AluY SINE Alu 1 309 -2 2157 134 0 7 chr6 147872529 147872836 -41406718 + AluSx SINE Alu 1 305 -7 183 162 0 0 chr6 147872916 147872953 -41406601 + A-rich Low_complexity Low_complexity 1 37 0 318 266 168 0 chr6 147873179 147873322 -41406232 + MLT1K LTR MaLR 147 313 -275 21 36 0 0 chr6 147873938 147873966 -41405588 + AT_rich Low_complexity Low_complexity 1 28 0 2132 122 0 0 chr6 147875937 147876225 -41403329 + AluSx SINE Alu 2 289 -23 1020 113 11 11 chr6 147876227 147876404 -41403150 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 181 233 120 98 chr6 147876496 147876629 -41402925 - MIR SINE MIR -1 261 126 2038 119 0 14 chr6 147876827 147877134 -41402420 + AluSx SINE Alu 1 303 0 1614 169 91 8 chr6 147877433 147877880 -41401674 + LTR64 LTR ERVK 2 546 -12 2459 81 0 7 chr6 147878086 147878393 -41401161 - AluSx SINE Alu -6 306 2 195 42 0 0 chr6 147878393 147878417 -41401137 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1667 161 7 33 chr6 147878705 147879004 -41400550 + AluJb SINE Alu 1 291 -21 251 250 100 20 chr6 147879370 147879470 -41400084 + MIR SINE MIR 91 198 -64 2260 108 0 13 chr6 147879921 147880057 -41399497 + AluSq SINE Alu 1 137 -176 2452 55 0 23 chr6 147880057 147880367 -41399187 + AluY SINE Alu 1 303 -8 2260 108 0 13 chr6 147880367 147880545 -41399009 + AluSq SINE Alu 137 311 -2 22 56 0 0 chr6 147880871 147880907 -41398647 + AT_rich Low_complexity Low_complexity 1 36 0 2532 48 3 0 chr6 147881308 147881618 -41397936 + AluY SINE Alu 1 311 0 862 207 94 15 chr6 147882682 147882885 -41396669 - MER20 DNA MER1_type 0 219 1 279 157 83 46 chr6 147883136 147883244 -41396310 - L1ME4a LINE L1 -3 6118 6007 384 327 84 29 chr6 147883323 147883598 -41395956 + MLT1I LTR MaLR 64 353 -56 27 81 0 0 chr6 147883730 147883792 -41395762 + AT_rich Low_complexity Low_complexity 1 62 0 2142 122 0 3 chr6 147885003 147885297 -41394257 + AluSp SINE Alu 2 294 -19 1128 270 128 26 chr6 147885743 147886276 -41393278 - L2 LINE L2 -1418 1896 1310 2153 122 0 3 chr6 147886323 147886618 -41392936 - AluSx SINE Alu -18 294 1 1440 254 63 40 chr6 147887031 147887508 -41392046 + LTR40a LTR ERVL 32 519 0 206 255 0 0 chr6 147887600 147887651 -41391903 + T-rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr6 147888491 147888520 -41391034 + AT_rich Low_complexity Low_complexity 1 29 0 2022 126 7 16 chr6 147888571 147888881 -41390673 - AluSx SINE Alu -5 307 1 2372 52 7 0 chr6 147889137 147889426 -41390128 - AluY SINE Alu -20 291 1 1669 194 41 0 chr6 147889534 147889827 -41389727 - AluJo SINE Alu -7 305 1 358 210 84 77 chr6 147890013 147890156 -41389398 - L2 LINE L2 -96 3217 3074 196 389 18 18 chr6 147890157 147890324 -41389230 + L2 LINE L2 2685 2851 -463 21 36 0 0 chr6 147890707 147890735 -41388819 + AT_rich Low_complexity Low_complexity 1 28 0 211 341 63 24 chr6 147890739 147890865 -41388689 + L2 LINE L2 3138 3268 -4 708 285 106 25 chr6 147891040 147891275 -41388279 - MIR SINE MIR -8 254 1 1811 140 81 0 chr6 147892002 147892287 -41387267 + AluSx SINE Alu 1 308 -4 607 280 21 5 chr6 147892728 147892914 -41386640 + L2 LINE L2 2369 2557 -757 322 290 0 30 chr6 147892921 147893021 -41386533 + L2 LINE L2 3213 3309 -4 23 33 0 0 chr6 147893690 147893720 -41385834 + AT_rich Low_complexity Low_complexity 1 30 0 24 85 0 0 chr6 147896063 147896122 -41383432 + AT_rich Low_complexity Low_complexity 1 59 0 5627 80 18 22 chr6 147896122 147896357 -41383197 - L1MA1 LINE L1 -5 6297 6063 2168 125 10 0 chr6 147896357 147896653 -41382901 - AluSx SINE Alu -13 299 1 5627 80 18 22 chr6 147896653 147897251 -41382303 - L1MA1 LINE L1 -239 6063 5467 190 370 87 11 chr6 147899898 147899990 -41379564 + MIR3 SINE MIR 1 99 -109 387 0 0 0 chr6 147900013 147900056 -41379498 + (TA)n Simple_repeat Simple_repeat 1 43 0 182 88 0 29 chr6 147900225 147900259 -41379295 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 23 0 0 0 chr6 147900364 147900387 -41379167 + AT_rich Low_complexity Low_complexity 1 23 0 1012 189 0 0 chr6 147900684 147900843 -41378711 + AluJb SINE Alu 137 295 -17 792 263 26 5 chr6 147900875 147901065 -41378489 + MIR SINE MIR 7 200 -62 195 129 0 0 chr6 147901648 147901679 -41377875 + (CA)n Simple_repeat Simple_repeat 1 31 0 302 305 34 25 chr6 147901884 147902002 -41377552 + MIR SINE MIR 59 177 -85 24 67 0 0 chr6 147903390 147903435 -41376119 + AT_rich Low_complexity Low_complexity 1 45 0 2093 95 57 0 chr6 147903597 147903880 -41375674 - AluSx SINE Alu -6 306 8 213 39 0 0 chr6 147904513 147904539 -41375015 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2133 138 0 0 chr6 147904566 147904870 -41374684 - AluSx SINE Alu -8 304 1 1750 302 101 11 chr6 147905021 147905762 -41373792 + L3 LINE CR1 646 1453 -124 225 0 0 0 chr6 147905979 147906004 -41373550 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 357 24 0 0 chr6 147906003 147906045 -41373509 + (CA)n Simple_repeat Simple_repeat 1 42 0 359 292 17 8 chr6 147906555 147906675 -41372879 + CT-rich Low_complexity Low_complexity 3 123 0 345 100 0 0 chr6 147907258 147907308 -41372246 + (TG)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chr6 147908461 147908483 -41371071 + AT_rich Low_complexity Low_complexity 1 22 0 1313 221 42 30 chr6 147909318 147909720 -41369834 + MLT1C LTR MaLR 53 459 -8 2160 136 0 3 chr6 147910479 147910787 -41368767 + AluSg SINE Alu 1 307 -3 2210 117 43 0 chr6 147911060 147911359 -41368195 + AluSx SINE Alu 1 312 0 24 32 0 0 chr6 147913060 147913091 -41366463 + AT_rich Low_complexity Low_complexity 1 31 0 180 125 0 0 chr6 147913207 147913239 -41366315 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 2260 95 0 14 chr6 147913361 147913657 -41365897 - AluY SINE Alu -19 292 1 2381 163 39 7 chr6 147913944 147914355 -41365199 + MSTB LTR MaLR 3 426 0 8926 193 9 5 chr6 147914355 147915999 -41363555 + MSTB-int LTR MaLR 1 1651 0 2377 158 39 7 chr6 147915999 147916410 -41363144 + MSTB LTR MaLR 1 424 -2 2408 57 0 0 chr6 147916785 147917081 -41362473 + AluY SINE Alu 1 296 -15 650 197 7 35 chr6 147917087 147917229 -41362325 + FRAM SINE Alu 1 137 -39 539 312 106 8 chr6 147917245 147917482 -41362072 - MIR SINE MIR -2 260 1 227 305 78 27 chr6 147917537 147918013 -41361541 + L1ME4a LINE L1 4882 5381 -765 32 67 0 0 chr6 147918200 147918260 -41361294 + AT_rich Low_complexity Low_complexity 1 60 0 439 257 45 20 chr6 147918262 147918464 -41361090 + L1ME4a LINE L1 5690 5896 -225 31 26 0 0 chr6 147918555 147918593 -41360961 + AT_rich Low_complexity Low_complexity 1 38 0 4240 130 7 18 chr6 147919308 147919437 -41360117 + L1MA4 LINE L1 5168 5297 -1003 243 0 0 0 chr6 147919437 147919464 -41360090 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4240 130 7 18 chr6 147919464 147919479 -41360075 + L1MA4 LINE L1 5297 5311 -989 2119 123 20 0 chr6 147919479 147919771 -41359783 + AluSx SINE Alu 3 300 -12 4240 130 7 18 chr6 147919771 147920468 -41359086 + L1MA4 LINE L1 5311 5994 -306 340 164 31 62 chr6 147920459 147920545 -41359009 + L1MB4 LINE L1 6057 6140 -40 * 2195 108 0 3 chr6 147920545 147920867 -41358687 + AluSx SINE Alu 1 321 0 340 164 31 62 chr6 147920867 147920907 -41358647 + L1MB4 LINE L1 6140 6180 0 2113 113 7 7 chr6 147923512 147923805 -41355749 + AluSx SINE Alu 1 293 -19 672 305 120 6 chr6 147923923 147924280 -41355274 + LTR33A LTR ERVL 64 461 -62 203 170 21 0 chr6 147924757 147924804 -41354750 + GA-rich Low_complexity Low_complexity 1 48 0 328 247 32 65 chr6 147924929 147925083 -41354471 - MLT1L LTR MaLR -43 572 424 692 269 66 37 chr6 147925436 147925678 -41353876 - MIR SINE MIR 0 262 14 981 254 4 25 chr6 147925835 147926079 -41353475 + MER8 DNA MER2_type 1 239 0 330 194 321 22 chr6 147926134 147926268 -41353286 - MER5A DNA MER1_type 0 189 16 1383 217 95 35 chr6 147926325 147926726 -41352828 - MER63B DNA MER1_type -6 430 6 360 295 36 9 chr6 147928320 147928432 -41351122 + MIR SINE MIR 2 116 -146 315 235 40 74 chr6 147928452 147928601 -41350953 - MIR SINE MIR -16 246 103 319 333 0 22 chr6 147928602 147928692 -41350862 + MIR SINE MIR 9 96 -166 22 0 0 0 chr6 147929748 147929770 -41349784 + AT_rich Low_complexity Low_complexity 1 22 0 518 335 156 24 chr6 147930489 147930674 -41348880 - L3 LINE CR1 -181 1396 1237 1811 147 22 35 chr6 147930674 147930987 -41348567 - AluJo SINE Alu -3 309 1 518 335 156 24 chr6 147930987 147931141 -41348413 - L3 LINE CR1 -340 1237 1012 278 300 247 0 chr6 147931358 147931528 -41348026 - L3 LINE CR1 -896 681 470 209 302 0 16 chr6 147931613 147931676 -41347878 + MIR3 SINE MIR 98 159 -49 453 207 158 12 chr6 147932093 147932257 -41347297 - MER46C DNA MER2_type -149 189 2 589 301 134 52 chr6 147932492 147932936 -41346618 - L2 LINE L2 -5 3267 2776 239 224 13 0 chr6 147933063 147933139 -41346415 + GA-rich Low_complexity Low_complexity 1 77 0 230 286 29 0 chr6 147933282 147933352 -41346202 + MIR SINE MIR 70 141 -67 306 339 18 0 chr6 147934373 147934485 -41345069 + MIR3 SINE MIR 81 194 -14 191 200 0 18 chr6 147934792 147934847 -41344707 + (CA)n Simple_repeat Simple_repeat 1 54 0 209 0 97 0 chr6 147935522 147935553 -41344001 + T-rich Low_complexity Low_complexity 1 34 0 426 260 73 45 chr6 147938224 147938401 -41341153 - MIR3 SINE MIR -25 183 2 24 0 0 0 chr6 147938785 147938809 -41340745 + AT_rich Low_complexity Low_complexity 1 24 0 336 210 12 25 chr6 147940387 147940549 -41339005 + (TA)n Simple_repeat Simple_repeat 2 161 0 372 237 0 32 chr6 147940549 147940642 -41338912 - L1MC4 LINE L1 -1339 6703 6614 343 303 0 0 chr6 147940566 147940655 -41338899 + L1MC4 LINE L1 6614 6702 -1340 * 1379 166 8 4 chr6 147940695 147940930 -41338624 - MER46A DNA MER2_type 0 236 1 999 242 123 96 chr6 147940990 147941565 -41337989 + MLT1E LTR MaLR 3 593 0 21 57 0 0 chr6 147942132 147942167 -41337387 + AT_rich Low_complexity Low_complexity 1 35 0 216 318 109 9 chr6 147942385 147942495 -41337059 - L2 LINE L2 -3 3269 3149 698 246 36 6 chr6 147942910 147943077 -41336477 + MER58A DNA MER1_type 5 176 -48 572 193 233 0 chr6 147943377 147943527 -41336027 + MER20 DNA MER1_type 35 219 0 1857 161 7 7 chr6 147943637 147943942 -41335612 - AluJb SINE Alu -7 305 1 1735 201 78 21 chr6 147944143 147944580 -41334974 - MLT1C LTR MaLR -5 462 1 2235 114 0 0 chr6 147945739 147946038 -41333516 - AluSq SINE Alu -14 299 1 273 236 14 28 chr6 147946174 147946246 -41333308 + MIR SINE MIR 186 256 -6 913 250 10 0 chr6 147947234 147947442 -41332112 - MIR SINE MIR -46 216 7 203 200 0 0 chr6 147947452 147947487 -41332067 + A-rich Low_complexity Low_complexity 1 35 0 422 281 85 20 chr6 147947510 147947663 -41331891 + L1M4 LINE L1 3030 3192 -2954 228 185 0 0 chr6 147948268 147948322 -41331232 + (TG)n Simple_repeat Simple_repeat 1 54 0 1373 213 105 47 chr6 147949287 147949649 -41329905 + MSTD LTR MaLR 1 383 -13 22 56 0 0 chr6 147949829 147949865 -41329689 + AT_rich Low_complexity Low_complexity 1 36 0 441 54 0 0 chr6 147950172 147950228 -41329326 + (TA)n Simple_repeat Simple_repeat 2 57 0 26 0 0 0 chr6 147950306 147950332 -41329222 + AT_rich Low_complexity Low_complexity 1 26 0 229 236 42 14 chr6 147951651 147951723 -41327831 + MLT1L LTR MaLR 207 280 -335 356 297 45 143 chr6 147952403 147952830 -41326724 - L2 LINE L2 -1 3271 2887 370 307 135 19 chr6 147952868 147953083 -41326471 - L2 LINE L2 -490 2824 2585 228 306 64 23 chr6 147954129 147954302 -41325252 - L1ME3A LINE L1 0 6153 5974 1430 262 77 16 chr6 147954420 147954924 -41324630 - L1ME3A LINE L1 -233 5920 5386 2427 131 64 10 chr6 147954926 147955330 -41324224 - MSTA LTR MaLR -2 426 1 1200 287 63 20 chr6 147955334 147955969 -41323585 - L1ME3A LINE L1 -743 5386 4725 725 284 68 47 chr6 147955980 147957054 -41322500 - L1MEd LINE L1 -4579 1731 595 35 54 0 0 chr6 147958011 147958067 -41321487 + AT_rich Low_complexity Low_complexity 1 56 0 842 126 0 8 chr6 147958067 147958186 -41321368 - AluJb SINE Alu -194 118 1 369 285 43 82 chr6 147959647 147959700 -41319854 - L1M4 LINE L1 -988 5158 5104 2380 80 0 0 chr6 147959700 147959999 -41319555 - AluY SINE Alu -12 299 1 369 285 43 82 chr6 147959999 147960201 -41319353 - L1M4 LINE L1 -1042 5104 4913 308 297 73 58 chr6 147960217 147960833 -41318721 - L1M4 LINE L1 -1321 4825 4201 240 294 25 4 chr6 147961075 147961188 -41318366 + MLT1J2 LTR MaLR 366 549 0 289 303 41 57 chr6 147961359 147961738 -41317816 - HERVL LTR ERVL -4143 853 487 386 278 75 46 chr6 147961815 147961988 -41317566 - MIR SINE MIR -57 205 28 533 167 155 95 chr6 147962414 147962582 -41316972 + MER5A DNA MER1_type 10 187 -2 1160 180 9 17 chr6 147963441 147963674 -41315880 - MLT2C2 LTR ERVL -232 232 2 302 337 157 18 chr6 147963841 147964314 -41315240 + L3 LINE CR1 984 1575 -2 310 230 69 0 chr6 147964471 147964558 -41314996 + L1ME4a LINE L1 6015 6107 -14 395 234 19 47 chr6 147965945 147966052 -41313502 + MIR SINE MIR 145 248 -14 206 156 0 67 chr6 147966019 147966064 -41313490 + L2 LINE L2 3261 3302 -11 * 1836 148 50 0 chr6 147966803 147967081 -41312473 + AluJb SINE Alu 9 300 -12 1541 142 9 4 chr6 147967246 147967472 -41312082 - AluJb SINE Alu -80 232 6 2305 88 3 25 chr6 147967706 147968026 -41311528 - AluSp SINE Alu 0 313 1 372 231 0 0 chr6 147968129 147968194 -41311360 - AluS SINE Alu -238 65 1 1933 86 58 80 chr6 147968823 147968941 -41310613 + AluSx SINE Alu 1 120 -192 2245 93 0 3 chr6 147968941 147969242 -41310312 + AluSp SINE Alu 1 300 -13 1933 86 58 80 chr6 147969242 147969436 -41310118 + AluSx SINE Alu 120 306 -6 180 0 0 0 chr6 147970968 147970988 -41308566 + (GA)n Simple_repeat Simple_repeat 2 21 0 288 325 9 44 chr6 147971486 147971686 -41307868 - L3b LINE CR1 -6 1571 1353 1755 95 0 0 chr6 147972044 147972266 -41307288 - AluSx SINE Alu -84 228 7 551 265 74 6 chr6 147972744 147972906 -41306648 + MIR SINE MIR 89 261 -1 228 111 0 0 chr6 147973614 147973650 -41305904 + (TG)n Simple_repeat Simple_repeat 1 36 0 1690 215 82 38 chr6 147974647 147975229 -41304325 - L1MC5 LINE L1 -30 7931 7324 360 285 122 68 chr6 147975943 147976312 -41303242 + L2 LINE L2 2919 3307 -6 238 281 202 0 chr6 147976482 147976571 -41302983 - MIR3 SINE MIR -12 196 90 269 324 111 9 chr6 147977118 147977226 -41302328 + MIR SINE MIR 16 134 -74 301 213 16 0 chr6 147977466 147977527 -41302027 - MER113 DNA MER1_type? -4 517 456 392 377 38 21 chr6 147977725 147977964 -41301590 - L3 LINE CR1 -71 1506 1264 213 118 20 78 chr6 147978420 147978471 -41301083 + T-rich Low_complexity Low_complexity 4 51 0 30893 65 10 4 chr6 147978472 147983426 -41296128 - L1PA6 LINE L1 0 6154 1178 788 57 0 0 chr6 147983436 147983541 -41296013 - L1P LINE L1 -3719 2427 2323 * 2313 184 31 11 chr6 147983540 147983991 -41295563 - L1PA6 LINE L1 -5686 460 1 21 0 0 0 chr6 147984075 147984096 -41295458 + AT_rich Low_complexity Low_complexity 1 21 0 1025 99 7 0 chr6 147984551 147984692 -41294862 - AluSg/x SINE Alu -11 301 160 1037 294 68 11 chr6 147985126 147985493 -41294061 - LTR16B LTR ERVL -74 390 3 393 323 0 8 chr6 147985498 147985621 -41293933 + L2 LINE L2 2832 2953 -361 329 271 0 0 chr6 147985621 147985691 -41293863 - MER91A DNA MER1_type 0 196 127 * 783 291 62 53 chr6 147985683 147986057 -41293497 + L2 LINE L2 2913 3289 -24 3061 138 10 2 chr6 147986061 147986545 -41293009 + HSMAR2 DNA Mariner 2 489 -813 4740 116 20 3 chr6 147986549 147987246 -41292308 + HSMAR2 DNA Mariner 592 1300 -2 211 333 60 33 chr6 147987950 147988100 -41291454 + L2 LINE L2 2597 2750 -564 2711 250 76 41 chr6 147988107 147989712 -41289842 + L1ME3 LINE L1 4140 5817 -345 1095 205 151 24 chr6 147989712 147990044 -41289510 + MLT1A2 LTR MaLR 1 374 0 2711 250 76 41 chr6 147990044 147990373 -41289181 + L1ME3 LINE L1 5817 6133 -29 594 157 0 0 chr6 147990482 147990571 -41288983 - AluSg/x SINE Alu -22 290 202 311 252 33 46 chr6 147990807 147990958 -41288596 + L1M4 LINE L1 5199 5347 -799 24 0 0 0 chr6 147992439 147992463 -41287091 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr6 147993885 147993908 -41285646 + AT_rich Low_complexity Low_complexity 1 23 0 741 242 118 151 chr6 147995830 147996624 -41282930 + L1MEd LINE L1 1 768 -5351 359 288 16 0 chr6 147997379 147997504 -41282050 - MIR SINE MIR -64 198 72 227 389 159 8 chr6 147997638 147997890 -41281664 - L2 LINE L2 -424 2890 2601 282 73 0 0 chr6 147997968 147998009 -41281545 + (TG)n Simple_repeat Simple_repeat 1 41 0 1273 173 6 3 chr6 147998234 147998699 -41280855 - LTR69 LTR ERVL -1 587 1 246 109 0 91 chr6 147998699 147998754 -41280800 - MLT1F LTR MaLR -3 539 490 428 306 44 0 chr6 147998951 147999111 -41280443 - MLT1-int LTR MaLR -769 602 436 698 320 48 17 chr6 147999463 147999935 -41279619 - LTR33 LTR ERVL -8 513 1 809 221 33 6 chr6 147999965 148000146 -41279408 + MER5A DNA MER1_type 1 186 -3 2295 110 0 0 chr6 148000947 148001257 -41278297 + AluSx SINE Alu 3 312 0 2994 29 0 0 chr6 148001502 148001851 -41277703 - L1PA5 LINE L1 -6 6148 5800 278 296 106 38 chr6 148001995 148002127 -41277427 + MIR SINE MIR 118 258 -4 576 303 55 12 chr6 148002131 148002296 -41277258 + MIR SINE MIR 6 177 -85 265 230 58 0 chr6 148002362 148002449 -41277105 - L1ME LINE L1 -364 5757 5666 278 222 81 30 chr6 148002540 148002639 -41276915 - L1ME LINE L1 -2265 5543 5440 8656 188 31 26 chr6 148004013 148004706 -41274848 + L1MC3 LINE L1 5869 6557 -1228 2208 108 3 7 chr6 148004706 148005011 -41274543 - AluSq SINE Alu -9 304 1 8656 188 31 26 chr6 148005011 148006215 -41273339 + L1MC3 LINE L1 6557 7775 -10 383 0 21 0 chr6 148006404 148006451 -41273103 + (TG)n Simple_repeat Simple_repeat 2 49 0 1832 159 0 38 chr6 148006578 148006893 -41272661 - AluJb SINE Alu -9 303 1 304 286 109 65 chr6 148007124 148007463 -41272091 - L1ME LINE L1 -1088 5058 4705 2137 148 0 0 chr6 148007651 148007955 -41271599 - AluSx SINE Alu -8 304 1 24 0 0 0 chr6 148008380 148008404 -41271150 + AT_rich Low_complexity Low_complexity 1 24 0 1254 108 3 0 chr6 148009593 148009942 -41269612 + (GAATG)n Satellite Satellite 1 350 0 818 136 0 22 chr6 148009953 148010137 -41269417 + (GAATG)n Satellite Satellite 1 180 0 1190 121 4 4 chr6 148010149 148010444 -41269110 + (GAATG)n Satellite Satellite 1 472 0 981 128 0 0 chr6 148010533 148010713 -41268841 + (GAATG)n Satellite Satellite 1 180 0 261 75 0 0 chr6 148010731 148010771 -41268783 + (GAATG)n Satellite Satellite 3 42 0 737 145 0 21 chr6 148010795 148011036 -41268518 + (GAATG)n Satellite Satellite 1 235 0 1179 128 0 1 chr6 148011057 148011677 -41267877 + (GAATG)n Satellite Satellite 1 799 0 778 136 5 27 chr6 148011812 148011996 -41267558 + (GAATG)n Satellite Satellite 1 180 0 1101 138 0 0 chr6 148012026 148012286 -41267268 + (GAATG)n Satellite Satellite 1 260 0 1047 126 3 12 chr6 148012330 148012665 -41266889 + (GAATG)n Satellite Satellite 1 510 0 970 117 6 6 chr6 148012665 148012845 -41266709 + (GAATG)n Satellite Satellite 1 180 0 987 129 0 0 chr6 148012895 148013073 -41266481 + (GAATG)n Satellite Satellite 3 180 0 265 17 0 85 chr6 148013267 148013326 -41266228 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 1284 97 0 0 chr6 148013353 148013712 -41265842 + (GAATG)n Satellite Satellite 1 359 0 768 169 0 0 chr6 148013733 148013911 -41265643 + (GAATG)n Satellite Satellite 3 180 0 1034 107 6 0 chr6 148013939 148014116 -41265438 + (GAATG)n Satellite Satellite 2 179 0 549 128 0 0 chr6 148014135 148014237 -41265317 + (GAATG)n Satellite Satellite 1 102 0 869 120 0 27 chr6 148014269 148014453 -41265101 + (GAATG)n Satellite Satellite 2 180 0 809 153 4 0 chr6 148014472 148014727 -41264827 + (GAATG)n Satellite Satellite 1 256 0 852 130 0 0 chr6 148014746 148014907 -41264647 + (GAATG)n Satellite Satellite 2 162 0 964 138 8 4 chr6 148014934 148015286 -41264268 + (GAATG)n Satellite Satellite 1 531 0 225 0 0 0 chr6 148015295 148015320 -41264234 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 22263 126 11 97 chr6 148065601 148069994 -41209560 - L1P LINE L1 -1746 4400 451 246 62 0 0 chr6 148069994 148070026 -41209528 + (CAA)n Simple_repeat Simple_repeat 2 33 0 22263 126 11 97 chr6 148070026 148070440 -41209114 - L1P LINE L1 -5695 451 3 6167 138 50 16 chr6 148070441 148071559 -41207995 - Tigger1 DNA MER2_type -1237 1181 26 519 308 80 80 chr6 148071854 148072302 -41207252 - HAL1b LINE L1 -894 454 7 2020 77 0 18 chr6 148072332 148072617 -41206937 + L1PA5 LINE L1 5873 6152 -2 971 121 0 0 chr6 148072664 148072796 -41206758 - AluSq/x SINE Alu -180 132 1 27 62 0 0 chr6 148072872 148072920 -41206634 + AT_rich Low_complexity Low_complexity 1 48 0 753 283 31 62 chr6 148073426 148073684 -41205870 - MIR SINE MIR -10 252 3 971 285 36 48 chr6 148074590 148075011 -41204543 - L2 LINE L2 -339 2975 2560 524 226 9 0 chr6 148075970 148076076 -41203478 - MER81 DNA DNA -7 107 1 486 354 96 28 chr6 148076079 148076401 -41203153 + L2 LINE L2 2929 3272 0 1823 174 3 16 chr6 148076505 148076821 -41202733 + AluJo SINE Alu 1 312 0 21 0 0 0 chr6 148078997 148079018 -41200536 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr6 148079718 148079738 -41199816 + (T)n Simple_repeat Simple_repeat 1 20 0 316 274 9 0 chr6 148079889 148079995 -41199559 + (CA)n Simple_repeat Simple_repeat 1 107 0 263 251 175 62 chr6 148080063 148080418 -41199136 - L1MC4 LINE L1 -130 7912 7518 333 272 22 38 chr6 148080448 148080632 -41198922 - L1ME3 LINE L1 -22 6140 5960 181 171 0 0 chr6 148080634 148080669 -41198885 + L2 LINE L2 3275 3309 -4 968 117 62 7 chr6 148082013 148082158 -41197396 + AluJb SINE Alu 147 299 -13 2196 132 0 0 chr6 148082526 148082829 -41196725 - AluSx SINE Alu -9 303 1 204 289 156 33 chr6 148082931 148083021 -41196533 + L2 LINE L2 3169 3269 -3 182 203 125 0 chr6 148084457 148084521 -41195033 - L2 LINE L2 -80 3233 3162 289 331 44 7 chr6 148084783 148084919 -41194635 - L2 LINE L2 -467 2847 2707 290 197 236 0 chr6 148084923 148085001 -41194553 - L1MA10 LINE L1 0 6334 6257 2845 227 29 44 chr6 148085001 148086223 -41193331 - L1ME1 LINE L1 -99 6067 4851 1841 224 23 2 chr6 148086229 148086715 -41192839 + L1M4 LINE L1 2636 3131 -3015 1756 122 0 0 chr6 148088507 148088744 -41190810 + THE1B LTR MaLR 1 237 -127 40649 54 30 2 chr6 148088744 148094729 -41184825 - L1PA3 LINE L1 -1 6154 4 949 148 0 0 chr6 148094729 148094871 -41184683 + THE1B LTR MaLR 221 362 -2 2107 130 0 19 chr6 148095584 148095900 -41183654 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr6 148098952 148098975 -41180579 + AT_rich Low_complexity Low_complexity 1 23 0 182 198 25 123 chr6 148099923 148100004 -41179550 + L2 LINE L2 3241 3313 0 1409 220 4 8 chr6 148100843 148101111 -41178443 + Tigger7 DNA MER2_type 1 267 -2220 592 149 11 0 chr6 148101109 148101203 -41178351 + Tigger7 DNA MER2_type 2389 2483 -4 * 21 36 0 0 chr6 148101943 148101971 -41177583 + AT_rich Low_complexity Low_complexity 1 28 0 387 0 0 0 chr6 148102668 148102711 -41176843 + (TA)n Simple_repeat Simple_repeat 2 44 0 2183 96 3 3 chr6 148102761 148103054 -41176500 - AluSc SINE Alu -16 293 1 471 226 44 29 chr6 148105713 148105850 -41173704 - L2 LINE L2 0 3313 3175 1177 209 0 43 chr6 148105858 148106135 -41173419 + AluJo SINE Alu 44 308 -4 458 259 4 113 chr6 148106138 148106404 -41173150 - L2 LINE L2 -141 3172 2936 301 360 93 6 chr6 148106453 148106614 -41172940 - MIR3 SINE MIR -16 192 18 2186 125 3 0 chr6 148106650 148106961 -41172593 - AluSx SINE Alu 0 312 1 219 216 14 68 chr6 148107856 148107930 -41171624 - MER5A DNA MER1_type -18 171 102 989 179 35 86 chr6 148108655 148108686 -41170868 - MLT2B1 LTR ERVL -8 512 481 345 47 0 0 chr6 148108686 148108729 -41170825 + (CA)n Simple_repeat Simple_repeat 2 44 0 989 179 35 86 chr6 148108729 148109151 -41170403 - MLT2B1 LTR ERVL -39 481 6 425 220 121 29 chr6 148110643 148110816 -41168738 - MER53 DNA DNA 0 189 1 23 54 0 0 chr6 148112124 148112161 -41167393 + AT_rich Low_complexity Low_complexity 1 37 0 7019 168 54 70 chr6 148112326 148113911 -41165643 + MER52A LTR ERV1 1 1755 0 1473 217 3 17 chr6 148114063 148114363 -41165191 + AluJo SINE Alu 3 298 -14 1331 275 89 77 chr6 148114398 148115034 -41164520 - L1ME LINE L1 -518 5627 5000 1743 193 7 13 chr6 148115034 148115339 -41164215 - AluJb SINE Alu -9 303 1 1331 275 89 77 chr6 148115339 148115988 -41163566 - L1ME LINE L1 -1145 5000 4360 1160 151 80 8 chr6 148115988 148116056 -41163498 + L1MA5A LINE L1 6040 6102 -195 540 0 0 0 chr6 148116056 148116116 -41163438 + (TTATA)n Simple_repeat Simple_repeat 4 63 0 1160 151 80 8 chr6 148116116 148116286 -41163268 + L1MA5A LINE L1 6102 6295 -2 1331 275 89 77 chr6 148116286 148117244 -41162310 - L1ME LINE L1 -1785 4360 3347 1948 30 30 0 chr6 148117469 148117734 -41161820 + L1PA4 LINE L1 5905 6176 0 311 329 102 35 chr6 148118042 148118214 -41161340 - L1ME LINE L1 -4759 1551 1355 5341 67 14 4 chr6 148118214 148118911 -41160643 - L1PA7 LINE L1 -2 6152 5449 311 329 102 35 chr6 148118911 148118993 -41160561 - L1ME LINE L1 -4955 1355 1280 562 253 108 42 chr6 148119020 148119352 -41160202 - L1ME LINE L1 -4862 1257 904 980 299 67 45 chr6 148119469 148120174 -41159380 - L1ME LINE L1 -5398 721 2 2048 129 0 39 chr6 148120708 148121017 -41158537 - AluSx SINE Alu -15 297 1 256 235 9 43 chr6 148121904 148122019 -41157535 - L1M4 LINE L1 -2160 3986 3876 1738 175 3 10 chr6 148122056 148122359 -41157195 + AluJb SINE Alu 1 301 -11 282 301 14 89 chr6 148122518 148122664 -41156890 - MIR SINE MIR -52 210 76 23 0 0 0 chr6 148127287 148127310 -41152244 + AT_rich Low_complexity Low_complexity 1 23 0 180 282 73 91 chr6 148128263 148128373 -41151181 + L2 LINE L2 3163 3270 -43 376 300 96 36 chr6 148128554 148128804 -41150750 - MER102a DNA MER1_type -25 305 41 216 0 0 0 chr6 148130261 148130285 -41149269 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 207 0 0 0 chr6 148132230 148132253 -41147301 + (A)n Simple_repeat Simple_repeat 1 23 0 333 0 0 0 chr6 148132362 148132399 -41147155 + (TG)n Simple_repeat Simple_repeat 1 37 0 553 286 119 7 chr6 148132411 148132588 -41146966 - MIR SINE MIR -33 229 38 848 210 11 11 chr6 148132648 148132824 -41146730 + MIR SINE MIR 66 241 -21 2749 142 21 17 chr6 148133468 148133933 -41145621 + MLT1C LTR MaLR 1 467 0 2502 267 64 11 chr6 148134655 148135497 -41144057 - L1MEc LINE L1 -5453 943 57 1327 210 4 11 chr6 148135560 148135841 -41143713 + L1PA16 LINE L1 5888 6166 0 1492 99 0 0 chr6 148135918 148136129 -41143425 - L1PA13 LINE L1 -2 6161 5951 307 278 113 33 chr6 148136255 148136406 -41143148 + MIR SINE MIR 28 190 -72 543 297 75 21 chr6 148137174 148137413 -41142141 + MIR SINE MIR 5 256 -6 384 167 42 62 chr6 148137869 148137965 -41141589 - MLT1L LTR MaLR -361 254 161 515 218 9 36 chr6 148138081 148138191 -41141363 + L2 LINE L2 3203 3309 -4 301 336 58 15 chr6 148138563 148138700 -41140854 - MER5A DNA MER1_type -11 178 36 22 0 0 0 chr6 148138864 148138886 -41140668 + AT_rich Low_complexity Low_complexity 1 22 0 280 357 48 18 chr6 148138897 148139124 -41140430 - L2 LINE L2 -444 2870 2637 722 131 0 0 chr6 148139960 148140067 -41139487 + AluSg/x SINE Alu 194 300 -10 1876 139 0 20 chr6 148140248 148140543 -41139011 - AluJb SINE Alu -23 289 1 4458 187 71 31 chr6 148141196 148142196 -41137358 - MER45B DNA AcHobo 0 1040 1 1501 128 0 92 chr6 148142347 148142620 -41136934 - AluJo SINE Alu -22 290 43 1448 218 24 13 chr6 148143701 148143999 -41135555 - AluJb SINE Alu -1 301 1 393 39 0 0 chr6 148144045 148144096 -41135458 + (TG)n Simple_repeat Simple_repeat 1 51 0 2889 0 0 0 chr6 148144768 148145076 -41134478 + AluYa5 SINE Alu 1 308 -3 203 152 0 0 chr6 148145545 148145578 -41133976 + CT-rich Low_complexity Low_complexity 2 34 0 22 35 0 0 chr6 148146412 148146441 -41133113 + AT_rich Low_complexity Low_complexity 1 29 0 353 356 21 52 chr6 148146726 148146917 -41132637 + MIR SINE MIR 9 193 -69 21 0 0 0 chr6 148147085 148147106 -41132448 + AT_rich Low_complexity Low_complexity 1 21 0 195 322 66 41 chr6 148147197 148147318 -41132236 + MIR3 SINE MIR 36 159 -49 284 127 18 0 chr6 148148631 148148686 -41130868 + CT-rich Low_complexity Low_complexity 2 57 0 24 53 0 0 chr6 148149468 148149506 -41130048 + AT_rich Low_complexity Low_complexity 1 38 0 605 126 0 0 chr6 148149654 148149741 -41129813 - LTR12 LTR ERV1 0 714 628 377 172 42 36 chr6 148149744 148149851 -41129703 - LTR30 LTR ERV1 -80 642 377 724 134 48 120 chr6 148149858 148150067 -41129487 - LTR12 LTR ERV1 -421 293 100 * 1294 124 22 108 chr6 148150037 148150348 -41129206 - LTR12 LTR ERV1 -483 231 1 29 0 0 0 chr6 148150650 148150679 -41128875 + AT_rich Low_complexity Low_complexity 1 29 0 190 361 157 0 chr6 148150950 148151058 -41128496 - MIR3 SINE MIR -50 158 34 194 278 56 14 chr6 148151116 148151188 -41128366 + MIR3 SINE MIR 119 193 -15 21 0 0 0 chr6 148151955 148151976 -41127578 + AT_rich Low_complexity Low_complexity 1 21 0 243 289 82 37 chr6 148152800 148152935 -41126619 - MIR SINE MIR 0 262 122 236 302 86 17 chr6 148153089 148153205 -41126349 + L3b LINE CR1 1343 1466 -117 3061 155 32 9 chr6 148153550 148154112 -41125442 + L1MB3 LINE L1 5598 6172 -11 252 146 36 18 chr6 148154131 148154241 -41125313 + (TA)n Simple_repeat Simple_repeat 1 112 0 988 26 0 0 chr6 148155880 148155997 -41123557 - L1PA2 LINE L1 0 6155 6039 4190 192 48 29 chr6 148156726 148158278 -41121276 - L1MB7 LINE L1 -20 6164 4585 2456 75 0 0 chr6 148158278 148158583 -41120971 - AluSc SINE Alu -4 305 1 4190 192 48 29 chr6 148158583 148158986 -41120568 - L1MB7 LINE L1 -1599 4585 4191 3026 222 19 11 chr6 148159151 148159484 -41120070 - MER82 DNA MER2_type 0 653 311 2383 131 13 11 chr6 148159484 148159858 -41119696 + THE1C LTR MaLR 1 375 0 3026 222 19 11 chr6 148159858 148160167 -41119387 - MER82 DNA MER2_type -342 311 6 314 294 22 59 chr6 148160203 148160339 -41119215 - MIR SINE MIR -4 258 128 41 0 0 0 chr6 148161413 148161454 -41118100 + AT_rich Low_complexity Low_complexity 1 41 0 1389 204 6 35 chr6 148161829 148162142 -41117412 - AluJo SINE Alu -8 304 1 1850 219 69 128 chr6 148162695 148163635 -41115919 - L1ME3A LINE L1 -9 6161 5277 582 250 56 11 chr6 148164613 148164793 -41114761 + MIR SINE MIR 47 234 -28 261 0 0 0 chr6 148165673 148165702 -41113852 + (CA)n Simple_repeat Simple_repeat 2 30 0 207 233 35 70 chr6 148166181 148166267 -41113287 - MIR3 SINE MIR -26 182 100 306 0 0 0 chr6 148168249 148168283 -41111271 + (CA)n Simple_repeat Simple_repeat 1 34 0 201 246 0 49 chr6 148168499 148168560 -41110994 - L2 LINE L2 0 3313 3256 219 290 11 43 chr6 148172636 148172729 -41106825 - L2 LINE L2 -1 3271 3182 1120 185 62 67 chr6 148172743 148173126 -41106428 - MSTC LTR MaLR 0 428 1 5169 238 146 32 chr6 148173126 148174085 -41105469 - MSTC-int LTR MaLR 0 1735 886 2090 125 0 0 chr6 148174085 148174390 -41105164 - AluSx SINE Alu 0 305 1 5169 238 146 32 chr6 148174390 148174986 -41104568 - MSTC-int LTR MaLR -849 886 2 844 216 112 82 chr6 148174997 148175363 -41104191 - MSTD LTR MaLR -19 377 1 770 136 83 0 chr6 148175825 148175957 -41103597 + MSTC LTR MaLR 286 428 0 953 162 0 60 chr6 148176182 148176367 -41103187 + AluJo SINE Alu 13 186 -126 390 327 47 50 chr6 148177070 148177367 -41102187 + L3 LINE CR1 999 1294 -283 493 213 92 6 chr6 148178907 148179071 -41100483 - MER113 DNA MER1_type? -319 202 25 297 236 189 31 chr6 148179738 148179865 -41099689 + MIR SINE MIR 6 152 -110 373 304 65 30 chr6 148180446 148180614 -41098940 + MIR SINE MIR 76 249 -13 31 68 0 0 chr6 148181471 148181530 -41098024 + GC_rich Low_complexity Low_complexity 1 59 0 275 0 29 0 chr6 148183371 148183406 -41096148 + (TG)n Simple_repeat Simple_repeat 2 37 0 560 260 27 7 chr6 148187019 148187165 -41092389 - MIR SINE MIR -1 261 113 355 341 57 93 chr6 148189836 148190296 -41089258 + L2 LINE L2 2830 3272 0 581 280 78 50 chr6 148190608 148190641 -41088913 + MIR SINE MIR 5 36 -226 2390 103 0 0 chr6 148190641 148190953 -41088601 + AluSx SINE Alu 1 312 0 581 280 78 50 chr6 148190953 148191137 -41088417 + MIR SINE MIR 36 228 -34 631 218 144 5 chr6 148191883 148192071 -41087483 - MER20 DNA MER1_type -1 218 5 435 19 0 0 chr6 148193224 148193276 -41086278 + (CA)n Simple_repeat Simple_repeat 2 53 0 422 279 83 87 chr6 148193899 148193932 -41085622 + L2 LINE L2 2955 2987 -285 189 0 0 0 chr6 148193932 148193953 -41085601 + (TAA)n Simple_repeat Simple_repeat 2 22 0 422 279 83 87 chr6 148193953 148194184 -41085370 + L2 LINE L2 2987 3218 -54 207 184 26 0 chr6 148195038 148195076 -41084478 - MIR3 SINE MIR -41 167 129 680 272 32 37 chr6 148195221 148195438 -41084116 + MIR SINE MIR 28 243 -19 538 258 40 35 chr6 148195593 148195791 -41083763 + L1ME3A LINE L1 5972 6170 0 339 328 69 5 chr6 148196088 148196292 -41083262 - L1MC/D LINE L1 -2048 5760 5544 30 27 0 0 chr6 148196469 148196506 -41083048 + AT_rich Low_complexity Low_complexity 1 37 0 313 182 0 0 chr6 148196726 148196781 -41082773 - MIR SINE MIR -14 248 194 294 329 67 18 chr6 148197890 148198054 -41081500 - MIR3 SINE MIR -8 200 29 235 169 28 0 chr6 148198132 148198203 -41081351 + (TTCA)n Simple_repeat Simple_repeat 3 75 0 2197 114 3 0 chr6 148200521 148200819 -41078735 - AluSq SINE Alu -14 299 1 21 0 0 0 chr6 148200925 148200946 -41078608 + AT_rich Low_complexity Low_complexity 1 21 0 287 364 36 0 chr6 148202130 148202270 -41077284 - MIR SINE MIR -61 201 57 463 326 78 14 chr6 148204592 148204939 -41074615 - L2 LINE L2 -516 2798 2430 207 0 0 0 chr6 148205100 148205123 -41074431 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 560 124 11 11 chr6 148205131 148205220 -41074334 - FRAM SINE Alu -30 146 58 548 95 0 0 chr6 148205540 148205614 -41073940 + MADE1 DNA Mariner 7 80 0 1702 193 69 67 chr6 148206340 148206806 -41072748 + MLT1C LTR MaLR 1 467 0 27 29 0 0 chr6 148206843 148206877 -41072677 + AT_rich Low_complexity Low_complexity 1 34 0 348 324 59 0 chr6 148207201 148207303 -41072251 - L2 LINE L2 -7 3265 3158 2359 68 3 10 chr6 148207669 148207964 -41071590 - AluSx SINE Alu -19 293 1 2034 147 0 0 chr6 148209258 148209564 -41069990 + AluSx SINE Alu 1 306 -6 2976 72 35 63 chr6 148210038 148210495 -41069059 - MLT2A1 LTR ERVL 0 444 1 20551 65 4 7 chr6 148210495 148213091 -41066463 - HERVL-A1 LTR ERVL 0 5654 3066 2949 80 59 9 chr6 148213330 148213368 -41066186 - MLT2A1 LTR ERVL 0 444 409 258 32 0 0 chr6 148213368 148213399 -41066155 + (TA)n Simple_repeat Simple_repeat 1 31 0 2949 80 59 9 chr6 148213399 148213783 -41065771 - MLT2A1 LTR ERVL -35 409 1 22 80 0 0 chr6 148213910 148213960 -41065594 + AT_rich Low_complexity Low_complexity 1 50 0 258 81 0 0 chr6 148214177 148214214 -41065340 + (TG)n Simple_repeat Simple_repeat 2 38 0 220 261 0 0 chr6 148216497 148216543 -41063011 + (TG)n Simple_repeat Simple_repeat 2 47 0 385 252 19 19 chr6 148216543 148216650 -41062904 + MER81 DNA DNA 1 107 -7 218 208 19 19 chr6 148216861 148216914 -41062640 + MER5B DNA MER1_type 121 173 -5 450 310 7 7 chr6 148216979 148217121 -41062433 - MIR3 SINE MIR -47 161 20 216 97 0 0 chr6 148217183 148217214 -41062340 + (A)n Simple_repeat Simple_repeat 1 31 0 283 214 174 31 chr6 148217542 148217640 -41061914 - MIR SINE MIR -119 143 32 265 278 194 13 chr6 148217663 148217853 -41061701 + MIR SINE MIR 1 261 -1 205 332 36 76 chr6 148217902 148218125 -41061429 + L2 LINE L2 2278 2491 -823 236 298 68 125 chr6 148218398 148218797 -41060757 + L2 LINE L2 2882 3257 -15 25 75 0 0 chr6 148220186 148220239 -41059315 + AT_rich Low_complexity Low_complexity 1 53 0 2053 112 34 3 chr6 148220680 148220976 -41058578 - AluSc SINE Alu -4 305 1 2088 169 15 20 chr6 148220978 148221387 -41058167 - L1MB8 LINE L1 -5 6173 5767 1138 207 29 4 chr6 148221412 148221692 -41057862 - L1MB8 LINE L1 -816 5330 5044 440 201 3 8 chr6 148221675 148221781 -41057773 - L1PB4 LINE L1 -224 5932 5858 * 360 137 0 98 chr6 148221778 148221880 -41057674 - L1MB8 LINE L1 -1077 5069 4978 * 4979 127 39 6 chr6 148221889 148222706 -41056848 - L1PA16 LINE L1 -3 6163 5320 209 156 0 22 chr6 148222846 148222891 -41056663 + (TA)n Simple_repeat Simple_repeat 2 45 0 374 243 88 44 chr6 148222974 148223110 -41056444 + MER117 DNA MER1_type 30 171 -26 218 198 25 25 chr6 148223272 148223293 -41056261 + (TAA)n Simple_repeat Simple_repeat 2 22 -60 2241 102 0 0 chr6 148223293 148223577 -41055977 + AluSx SINE Alu 1 284 -28 218 198 25 25 chr6 148223577 148223636 -41055918 + (TAA)n Simple_repeat Simple_repeat 21 82 0 417 332 39 24 chr6 148223759 148223957 -41055597 - MIR SINE MIR -38 224 21 1962 144 9 40 chr6 148223957 148224303 -41055251 - L1PB4 LINE L1 0 6156 5822 1552 146 4 21 chr6 148224515 148224755 -41054799 - AluSx SINE Alu -76 236 1 1416 266 90 47 chr6 148225011 148225266 -41054288 - L2 LINE L2 -4 3309 3066 2198 72 0 0 chr6 148225266 148225544 -41054010 - AluY SINE Alu 0 311 34 1416 266 90 47 chr6 148225544 148226222 -41053332 - L2 LINE L2 -247 3066 2342 305 223 154 46 chr6 148226222 148226352 -41053202 + MLT1J2 LTR MaLR 2 145 -305 574 290 47 0 chr6 148226602 148226771 -41052783 - L2 LINE L2 -1040 2274 2098 1065 153 11 42 chr6 148227128 148227318 -41052236 - MER20 DNA MER1_type -1 218 35 2152 86 20 17 chr6 148228134 148228426 -41051128 + AluSx SINE Alu 1 293 -19 592 197 94 0 chr6 148228453 148228570 -41050984 - MER58A DNA MER1_type 0 128 1 256 337 90 30 chr6 148228998 148229298 -41050256 - L2 LINE L2 -1195 2119 1802 320 291 191 73 chr6 148230336 148230556 -41048998 - MIR SINE MIR -4 258 13 212 302 0 70 chr6 148230969 148231055 -41048499 - MIR3 SINE MIR -25 183 104 285 238 0 83 chr6 148233123 148233207 -41046347 - MIR3 SINE MIR -18 190 114 1563 134 0 60 chr6 148233948 148234217 -41045337 + AluJb SINE Alu 14 266 -46 216 94 57 0 chr6 148234225 148234278 -41045276 + (TA)n Simple_repeat Simple_repeat 1 56 0 360 0 0 0 chr6 148234305 148234345 -41045209 + (TA)n Simple_repeat Simple_repeat 1 40 0 685 161 139 0 chr6 148234641 148234778 -41044776 - FAM SINE Alu 0 49 1 1937 142 0 46 chr6 148234839 148235162 -41044392 - AluSx SINE Alu -4 308 1 305 326 91 8 chr6 148235918 148236050 -41043504 - MIR SINE MIR -115 147 5 1583 263 72 22 chr6 148236073 148236907 -41042647 - L2 LINE L2 -4 3309 2435 452 250 42 135 chr6 148237113 148237513 -41042041 - L1MEd LINE L1 -3525 2604 2242 364 303 92 66 chr6 148237529 148237800 -41041754 - L1MEd LINE L1 -5500 619 342 335 283 101 19 chr6 148237860 148238019 -41041535 - L1MEd LINE L1 -5881 238 67 1820 263 35 16 chr6 148238145 148238724 -41040830 - L1MC4 LINE L1 -751 7291 6702 216 97 0 0 chr6 148238725 148238756 -41040798 + (TG)n Simple_repeat Simple_repeat 2 32 0 642 243 28 28 chr6 148238844 148239021 -41040533 + MIR SINE MIR 57 233 -29 2239 53 0 4 chr6 148239731 148239996 -41039558 + AluY SINE Alu 21 338 0 487 0 0 0 chr6 148239996 148240050 -41039504 + (TAAAA)n Simple_repeat Simple_repeat 2 65 0 213 196 0 0 chr6 148240155 148240201 -41039353 + (TA)n Simple_repeat Simple_repeat 1 46 0 324 64 0 0 chr6 148240207 148240254 -41039300 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 2034 143 45 28 chr6 148240254 148240611 -41038943 - Tigger2a DNA MER2_type -71 363 1 1379 114 5 5 chr6 148240783 148241008 -41038546 - AluSc SINE Alu 0 311 87 523 332 70 0 chr6 148241803 148242044 -41037510 - MIR SINE MIR -2 260 3 24 0 0 0 chr6 148242504 148242528 -41037026 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr6 148243034 148243059 -41036495 + AT_rich Low_complexity Low_complexity 1 25 0 980 264 0 5 chr6 148243167 148243383 -41036171 - MER58A DNA MER1_type 0 224 10 189 333 29 57 chr6 148244236 148244341 -41035213 + L2 LINE L2 3171 3272 0 254 299 147 103 chr6 148244450 148244654 -41034900 - L2 LINE L2 -6 3266 3054 924 274 120 20 chr6 148245051 148245711 -41033843 - L2 LINE L2 -4 3309 2594 194 216 80 80 chr6 148245707 148245795 -41033759 + MIR SINE MIR 170 257 -5 * 362 239 80 35 chr6 148246448 148246561 -41032993 - MIR SINE MIR -125 137 20 278 308 148 44 chr6 148246583 148246765 -41032789 - MIR3 SINE MIR -7 201 1 604 305 6 0 chr6 148247941 148248115 -41031439 - MIR SINE MIR -11 251 77 2350 119 3 42 chr6 148248115 148248494 -41031060 + THE1B LTR MaLR 1 364 0 374 315 121 0 chr6 148248513 148248662 -41030892 - MIR SINE MIR -70 192 26 2094 132 15 54 chr6 148248675 148249084 -41030470 - L1PA16 LINE L1 -10 6156 5764 29 47 0 0 chr6 148249172 148249215 -41030339 + AT_rich Low_complexity Low_complexity 1 43 0 32 43 0 0 chr6 148249466 148249512 -41030042 + AT_rich Low_complexity Low_complexity 1 46 0 199 291 57 113 chr6 148251305 148251601 -41027953 + L2 LINE L2 2425 2736 -578 186 43 0 0 chr6 148251601 148251624 -41027930 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1613 171 29 4 chr6 148251626 148251900 -41027654 - AluJb SINE Alu -31 281 1 199 291 57 113 chr6 148251900 148252023 -41027531 + L2 LINE L2 2737 2823 -491 * 242 267 38 107 chr6 148252006 148252137 -41027417 + L2 LINE L2 3132 3253 -19 252 0 0 0 chr6 148252668 148252696 -41026858 + (CA)n Simple_repeat Simple_repeat 1 28 0 211 276 92 41 chr6 148252723 148252821 -41026733 + MIR SINE MIR 88 190 -72 21 36 0 0 chr6 148254815 148254843 -41024711 + AT_rich Low_complexity Low_complexity 1 28 0 374 252 5 0 chr6 148258059 148258274 -41021280 + (TCCA)n Simple_repeat Simple_repeat 1 216 0 294 272 36 77 chr6 148259675 148259990 -41019564 - L1MEc LINE L1 -3631 2584 2286 1778 169 23 10 chr6 148259990 148260298 -41019256 - AluJb SINE Alu 0 312 1 294 272 36 77 chr6 148260298 148260372 -41019182 - L1MEc LINE L1 -3929 2286 2211 22 35 0 0 chr6 148260583 148260612 -41018942 + AT_rich Low_complexity Low_complexity 1 29 0 1796 198 20 3 chr6 148260813 148261167 -41018387 - L1PB4 LINE L1 0 6156 5797 344 282 0 9 chr6 148261235 148261345 -41018209 - L1MEc LINE L1 -4746 1650 1542 236 218 39 26 chr6 148261389 148261467 -41018087 - HAL1 LINE L1 -988 1519 1441 326 336 10 0 chr6 148262470 148262574 -41016980 + MER94 DNA DNA 5 109 -25 300 27 0 0 chr6 148263359 148263396 -41016158 + (TG)n Simple_repeat Simple_repeat 1 37 0 23 0 0 0 chr6 148265052 148265075 -41014479 + AT_rich Low_complexity Low_complexity 1 23 0 2047 86 0 0 chr6 148265190 148265446 -41014108 - AluY SINE Alu -6 305 50 502 283 72 0 chr6 148265985 148266123 -41013431 - MER58B DNA MER1_type 0 341 194 1225 117 83 5 chr6 148266579 148266784 -41012770 + MER46A DNA MER2_type 16 236 0 1851 163 20 0 chr6 148267414 148267715 -41011839 - AluSx SINE Alu -3 309 3 563 251 113 42 chr6 148268343 148268582 -41010972 + MIR SINE MIR 7 262 0 300 325 157 11 chr6 148268580 148268771 -41010783 + MIR SINE MIR 32 250 -12 * 566 292 57 10 chr6 148270388 148270580 -41008974 + L3 LINE CR1 1374 1574 -3 234 0 0 0 chr6 148270835 148270861 -41008693 + (TA)n Simple_repeat Simple_repeat 1 26 0 2013 80 6 68 chr6 148272823 148273134 -41006420 - AluSc SINE Alu -17 292 1 399 239 136 136 chr6 148273175 148273544 -41006010 + L2 LINE L2 2944 3312 -1 347 402 6 22 chr6 148273563 148273742 -41005812 + L3 LINE CR1 1384 1559 -18 415 230 109 46 chr6 148275668 148275842 -41003712 - L2 LINE L2 -1 3312 3128 688 269 78 29 chr6 148276241 148276664 -41002890 + L1MD3 LINE L1 7006 7545 -450 340 313 48 0 chr6 148277001 148277167 -41002387 + L1MC4 LINE L1 7869 8042 0 383 318 84 43 chr6 148277501 148277847 -41001707 - L2 LINE L2 -673 2641 2282 711 261 194 30 chr6 148280646 148281260 -40998294 - L2 LINE L2 -106 3207 2493 341 272 22 11 chr6 148281616 148281708 -40997846 - L2 LINE L2 0 3313 3221 2160 103 24 0 chr6 148283207 148283329 -40996225 + AluSp SINE Alu 1 119 -194 492 18 0 0 chr6 148283329 148283386 -40996168 + (CA)n Simple_repeat Simple_repeat 2 58 0 2160 103 24 0 chr6 148283386 148283554 -40996000 + AluSp SINE Alu 119 298 -15 511 150 0 14 chr6 148283562 148283833 -40995721 + AluJ SINE Alu 1 309 0 2138 113 0 3 chr6 148284234 148284526 -40995028 + AluSc SINE Alu 1 291 -18 423 0 0 0 chr6 148284900 148284947 -40994607 + (TA)n Simple_repeat Simple_repeat 1 47 0 211 111 19 19 chr6 148285878 148285932 -40993622 + (CCA)n Simple_repeat Simple_repeat 2 55 0 22 0 0 0 chr6 148286987 148287009 -40992545 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 148287781 148287803 -40991751 + AT_rich Low_complexity Low_complexity 1 22 0 214 356 162 9 chr6 148288935 148289151 -40990403 - MIR SINE MIR 0 262 14 22 35 0 0 chr6 148289695 148289724 -40989830 + AT_rich Low_complexity Low_complexity 1 29 0 810 289 22 9 chr6 148289932 148290160 -40989394 - MIR SINE MIR 0 262 32 233 348 37 52 chr6 148290318 148290453 -40989101 + MIR3 SINE MIR 4 136 -72 2190 102 30 7 chr6 148290604 148290907 -40988647 - AluSg SINE Alu 0 310 1 457 175 29 19 chr6 148290927 148291030 -40988524 + L2 LINE L2 2173 2276 -1038 1500 288 67 23 chr6 148291030 148291822 -40987732 + L2 LINE L2 2491 3313 0 368 272 123 25 chr6 148292091 148292253 -40987301 - Charlie8 DNA MER1_type -2238 179 2 706 331 46 42 chr6 148292516 148292990 -40986564 - L2 LINE L2 -12 3301 2826 1218 319 76 30 chr6 148293003 148294061 -40985493 - L1MEc LINE L1 -5211 1185 80 342 226 34 55 chr6 148294130 148294276 -40985278 - L1MC5 LINE L1 -44 7917 7775 22 35 0 0 chr6 148294937 148294966 -40984588 + AT_rich Low_complexity Low_complexity 1 29 0 230 272 184 18 chr6 148296778 148296892 -40982662 - MIR SINE MIR -5 257 125 1538 80 0 9 chr6 148297425 148297649 -40981905 - L1PA13 LINE L1 -2 6161 5940 1846 99 4 0 chr6 148297650 148297912 -40981642 + L1PA12 LINE L1 5621 5883 -285 1184 202 19 112 chr6 148298202 148298613 -40980941 - MLT1A2 LTR MaLR 0 374 2 360 0 0 0 chr6 148299087 148299127 -40980427 + (TG)n Simple_repeat Simple_repeat 2 41 0 740 134 0 0 chr6 148299136 148299248 -40980306 - AluSg/x SINE Alu -11 298 187 2772 16 0 0 chr6 148299324 148299629 -40979925 + AluYa5 SINE Alu 1 305 -6 29 70 0 0 chr6 148300235 148300292 -40979262 + AT_rich Low_complexity Low_complexity 1 57 0 247 344 82 16 chr6 148300566 148300749 -40978805 + MIR SINE MIR 3 197 -65 917 279 77 41 chr6 148300990 148301456 -40978098 - L2 LINE L2 0 3313 2831 201 269 115 29 chr6 148301534 148301638 -40977916 - MIR SINE MIR -80 128 16 205 282 0 0 chr6 148302795 148302834 -40976720 - L2 LINE L2 -24 3248 3210 222 246 197 0 chr6 148302913 148302974 -40976580 - L2 LINE L2 -11 3261 3189 308 146 0 55 chr6 148303325 148303380 -40976174 + LTR40a LTR ERVL 3 54 -465 1466 233 67 53 chr6 148303489 148303939 -40975615 + LTR40a LTR ERVL 64 519 0 4911 249 42 72 chr6 148303940 148305599 -40973955 + HERVL40 LTR ERVL 1 1608 -3922 2439 235 85 29 chr6 148305599 148305813 -40973741 + HERVL40 LTR ERVL 2520 2721 -2809 2304 68 7 3 chr6 148305813 148306108 -40973446 - AluY SINE Alu -14 297 2 2439 235 85 29 chr6 148306108 148307546 -40972008 + HERVL40 LTR ERVL 2721 4380 -1150 523 191 0 0 chr6 148307560 148307654 -40971900 + LTR40a LTR ERVL 426 519 0 2159 203 40 61 chr6 148307737 148308362 -40971192 - MER74B LTR ERVL -10 612 1 918 315 80 20 chr6 148308369 148308820 -40970734 - L2 LINE L2 -669 2645 2168 405 242 42 0 chr6 148309481 148309576 -40969978 + LTR40a LTR ERVL 418 516 -3 192 204 0 45 chr6 148310305 148310349 -40969205 - MIR SINE MIR -113 95 54 22 35 0 0 chr6 148311720 148311749 -40967805 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr6 148311806 148311837 -40967717 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr6 148314803 148314846 -40964708 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr6 148315081 148315108 -40964446 + AT_rich Low_complexity Low_complexity 1 27 0 33 43 0 0 chr6 148318056 148318103 -40961451 + AT_rich Low_complexity Low_complexity 1 47 0 26 0 0 0 chr6 148318628 148318654 -40960900 + AT_rich Low_complexity Low_complexity 1 26 0 346 266 26 87 chr6 148319326 148319473 -40960081 + L2 LINE L2 3099 3229 -84 1131 209 92 0 chr6 148319473 148319765 -40959789 - MER33 DNA MER1_type -1 323 5 346 266 26 87 chr6 148319765 148319846 -40959708 + L2 LINE L2 3229 3313 0 189 0 0 0 chr6 148319899 148319920 -40959634 + (T)n Simple_repeat Simple_repeat 1 21 0 1125 186 92 41 chr6 148320155 148320309 -40959245 + L1MA10 LINE L1 6000 6145 -189 180 0 0 0 chr6 148320309 148320329 -40959225 + (CA)n Simple_repeat Simple_repeat 1 20 0 1125 186 92 41 chr6 148320329 148320491 -40959063 + L1MA10 LINE L1 6145 6332 -2 510 322 61 17 chr6 148320518 148320769 -40958785 + MIR SINE MIR 1 262 0 213 250 19 0 chr6 148320987 148321039 -40958515 + MIR SINE MIR 210 262 0 324 0 0 0 chr6 148321261 148321297 -40958257 + (TG)n Simple_repeat Simple_repeat 2 37 0 714 231 0 0 chr6 148321460 148321594 -40957960 + FAM SINE Alu 1 134 -51 243 344 0 0 chr6 148322067 148322128 -40957426 - L2 LINE L2 -52 3220 3160 469 242 8 21 chr6 148323124 148323371 -40956183 + CT-rich Low_complexity Low_complexity 1 243 0 240 35 0 0 chr6 148323399 148323428 -40956126 + (T)n Simple_repeat Simple_repeat 1 29 0 2052 85 4 15 chr6 148325610 148325880 -40953674 + AluSx SINE Alu 44 310 -2 28 48 0 0 chr6 148326618 148326660 -40952894 + AT_rich Low_complexity Low_complexity 1 42 0 2501 61 0 0 chr6 148327357 148327651 -40951903 + AluY SINE Alu 6 299 -12 30 27 0 0 chr6 148327656 148327693 -40951861 + AT_rich Low_complexity Low_complexity 1 37 0 467 68 0 14 chr6 148327703 148327776 -40951778 + (TG)n Simple_repeat Simple_repeat 1 72 0 2276 95 3 0 chr6 148330460 148330756 -40948798 + AluSx SINE Alu 1 297 -15 573 273 0 36 chr6 148331729 148331868 -40947686 + L2 LINE L2 3139 3272 0 181 357 61 0 chr6 148331999 148332097 -40947457 + L2 LINE L2 2380 2483 -831 1940 146 0 7 chr6 148332554 148332856 -40946698 - AluSx SINE Alu -12 300 1 204 67 0 0 chr6 148333301 148333331 -40946223 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 1206 82 0 47 chr6 148333546 148333716 -40945838 - AluSp SINE Alu -3 310 149 335 203 78 0 chr6 148335636 148335700 -40943854 - L2 LINE L2 -18 3295 3227 306 0 0 0 chr6 148336619 148336653 -40942901 + (T)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chr6 148337360 148337388 -40942166 + AT_rich Low_complexity Low_complexity 1 28 0 336 218 9 109 chr6 148337561 148337671 -40941883 + L2 LINE L2 3215 3313 0 2121 116 0 13 chr6 148337815 148338117 -40941437 + AluSx SINE Alu 5 302 -10 189 121 0 0 chr6 148339038 148339071 -40940483 + (TG)n Simple_repeat Simple_repeat 1 33 0 2026 125 113 0 chr6 148339990 148340317 -40939237 - THE1B LTR MaLR 0 364 1 2287 104 0 0 chr6 148342566 148342865 -40936689 + AluSg SINE Alu 5 303 -7 2902 159 25 18 chr6 148343314 148343879 -40935675 + L1MA4 LINE L1 5731 6299 -1 183 256 0 0 chr6 148344056 148344095 -40935459 + MIR SINE MIR 220 258 -4 231 88 0 0 chr6 148344489 148344523 -40935031 + (CA)n Simple_repeat Simple_repeat 2 35 0 189 0 0 0 chr6 148345056 148345077 -40934477 + (CA)n Simple_repeat Simple_repeat 2 22 0 337 270 120 0 chr6 148345309 148345409 -40934145 + MIR SINE MIR 108 219 -43 2163 109 3 28 chr6 148346128 148346448 -40933106 - AluSp SINE Alu -1 312 1 202 292 28 14 chr6 148347548 148347620 -40931934 + L2 LINE L2 3241 3313 0 1252 244 80 26 chr6 148347905 148348331 -40931223 - L2 LINE L2 -4 3309 2861 316 103 35 0 chr6 148348340 148348398 -40931156 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 239 368 96 61 chr6 148348463 148348724 -40930830 - L2 LINE L2 0 3272 3003 24 0 0 0 chr6 148350823 148350847 -40928707 + AT_rich Low_complexity Low_complexity 1 24 0 858 259 21 29 chr6 148350862 148351105 -40928449 + MIR SINE MIR 21 261 -1 1592 138 17 31 chr6 148351517 148351808 -40927746 + L1MA9 LINE L1 5647 5933 -379 1211 199 78 21 chr6 148351920 148352281 -40927273 + L1MA9 LINE L1 5896 6269 -43 549 278 110 41 chr6 148353753 148354361 -40925193 - L1ME4a LINE L1 -17 6104 5457 1066 221 68 35 chr6 148354600 148354939 -40924615 - L1ME3A LINE L1 0 6170 5821 311 318 39 22 chr6 148355478 148355657 -40923897 + L2 LINE L2 1236 1417 -1897 896 342 86 25 chr6 148355728 148356464 -40923090 + L2 LINE L2 1891 2671 -643 1145 244 34 15 chr6 148356915 148357181 -40922373 - L1MEc LINE L1 -6089 307 37 288 277 266 23 chr6 148357284 148357461 -40922093 - MIR SINE MIR -6 256 37 582 322 145 11 chr6 148357621 148358120 -40921434 + L2 LINE L2 2725 3313 0 378 373 51 24 chr6 148358148 148358601 -40920953 - L2 LINE L2 -102 3170 2600 419 302 40 7 chr6 148359439 148359588 -40919966 - MIR3 SINE MIR 0 208 55 271 301 71 18 chr6 148360094 148360207 -40919347 - MIR SINE MIR -68 140 22 192 310 28 0 chr6 148360721 148360792 -40918762 + L2 LINE L2 3238 3310 -3 279 226 20 29 chr6 148360846 148360948 -40918606 + (CATATA)n Simple_repeat Simple_repeat 6 106 0 243 313 25 25 chr6 148362152 148362232 -40917322 + L2 LINE L2 3234 3313 0 352 310 63 6 chr6 148364671 148364914 -40914640 - L1MC4a LINE L1 -217 5947 5689 491 290 18 43 chr6 148365664 148365905 -40913649 - L1MC4a LINE L1 -544 5618 5384 33 25 0 0 chr6 148365909 148365949 -40913605 + AT_rich Low_complexity Low_complexity 1 40 0 387 248 10 0 chr6 148366032 148366135 -40913419 - L1MA10 LINE L1 -68 6098 5998 6057 122 152 25 chr6 148366146 148367280 -40912274 - MER52C LTR ERV1 0 1278 1 539 227 14 7 chr6 148367333 148367474 -40912080 - L1ME1 LINE L1 -303 5863 5722 196 313 157 43 chr6 148368529 148368644 -40910910 + L2 LINE L2 3141 3268 -4 191 388 24 12 chr6 148369004 148369169 -40910385 + L2 LINE L2 2866 3032 -240 284 173 0 39 chr6 148369325 148369377 -40910177 + L2 LINE L2 3185 3234 -79 339 361 69 28 chr6 148370322 148370713 -40908841 - L2 LINE L2 -806 2508 2102 582 301 121 38 chr6 148370774 148371246 -40908308 - MLT1L LTR MaLR 0 615 105 2408 98 0 0 chr6 148371249 148371556 -40907998 - AluSg SINE Alu 0 310 4 2005 101 27 3 chr6 148372209 148372506 -40907048 - L1PA16 LINE L1 -9 6157 5854 384 136 30 0 chr6 148372506 148372572 -40906982 + L1PA16 LINE L1 5781 5848 -318 223 288 96 0 chr6 148372769 148372842 -40906712 + L2 LINE L2 3185 3264 -8 1015 272 123 48 chr6 148373075 148373692 -40905862 - L2 LINE L2 0 3313 2647 401 326 206 33 chr6 148375457 148375825 -40903729 + L3 LINE CR1 215 646 -931 1317 86 0 0 chr6 148375825 148375988 -40903566 - AluSc SINE Alu -146 163 1 956 325 139 29 chr6 148376001 148376758 -40902796 + L3 LINE CR1 665 1504 -73 204 182 0 0 chr6 148378173 148378217 -40901337 + (CA)n Simple_repeat Simple_repeat 2 45 0 2354 92 0 3 chr6 148378273 148378577 -40900977 + AluSg SINE Alu 1 303 -7 227 269 39 48 chr6 148378789 148378893 -40900661 - L2 LINE L2 -18 3295 3193 607 279 39 6 chr6 148379692 148379871 -40899683 + MIR SINE MIR 20 204 -58 1948 136 26 62 chr6 148379900 148380289 -40899265 - THE1C LTR MaLR 0 375 1 319 277 89 0 chr6 148380971 148381072 -40898482 + L2 LINE L2 3192 3301 -12 2526 60 0 25 chr6 148381095 148381411 -40898143 + AluY SINE Alu 1 308 -3 2402 194 47 45 chr6 148381809 148382324 -40897230 - MER77 LTR ERV1 -89 516 1 239 236 179 43 chr6 148382324 148382464 -40897090 - L1MEc LINE L1 -6193 203 45 474 260 125 21 chr6 148383217 148383684 -40895870 - L1MCc LINE L1 -4832 2007 1578 1575 201 98 80 chr6 148383724 148384262 -40895292 - LTR10A LTR ERV1 -61 548 1 215 210 8 25 chr6 148384262 148384381 -40895173 + (TA)n Simple_repeat Simple_repeat 1 117 0 335 306 50 9 chr6 148384388 148384607 -40894947 - L1MCc LINE L1 -4933 1490 1263 1871 265 60 33 chr6 148384852 148386750 -40892804 - L1M1 LINE L1 -1840 5725 3674 860 301 109 16 chr6 148386761 148387147 -40892407 - LTR16A LTR ERVL -12 438 17 1250 277 80 4 chr6 148387167 148387842 -40891712 - L1M1 LINE L1 -4034 3712 2907 2439 70 0 6 chr6 148387901 148388214 -40891340 - AluY SINE Alu 0 311 1 22 35 0 0 chr6 148389909 148389938 -40889616 + AT_rich Low_complexity Low_complexity 1 29 0 1241 195 42 4 chr6 148391468 148391729 -40887825 - MER58B DNA MER1_type -14 327 57 551 261 100 22 chr6 148391894 148392074 -40887480 + MIR SINE MIR 20 213 -49 2401 65 0 0 chr6 148392326 148392619 -40886935 - AluY SINE Alu -18 293 1 1982 134 0 23 chr6 148392838 148393145 -40886409 - AluSx SINE Alu -12 300 1 1228 209 39 4 chr6 148393407 148393666 -40885888 - MER58B DNA MER1_type -48 293 26 347 372 61 30 chr6 148393884 148394115 -40885439 - L2 LINE L2 -6 3266 3029 770 249 101 0 chr6 148396774 148396983 -40882571 + MIR SINE MIR 8 237 -25 242 287 20 30 chr6 148397043 148397144 -40882410 - L3b LINE CR1 -121 1462 1363 567 298 130 5 chr6 148397247 148397462 -40882092 + MIR SINE MIR 20 261 -1 21 0 0 0 chr6 148399266 148399287 -40880267 + AT_rich Low_complexity Low_complexity 1 21 0 323 352 108 23 chr6 148400226 148400402 -40879152 - MIR3 SINE MIR 0 208 18 330 150 100 0 chr6 148400522 148400582 -40878972 - MER3 DNA MER1_type -2 207 142 295 200 100 12 chr6 148400708 148400788 -40878766 + MER3 DNA MER1_type 123 209 0 * 622 198 0 0 chr6 148400788 148400835 -40878719 - MER3 DNA MER1_type -162 47 1 450 223 116 8 chr6 148400843 148400964 -40878590 - MER20 DNA MER1_type 0 219 86 286 115 33 66 chr6 148401008 148401069 -40878485 - MER20 DNA MER1_type -145 74 16 21 36 0 0 chr6 148403106 148403134 -40876420 + AT_rich Low_complexity Low_complexity 1 28 0 276 319 125 38 chr6 148404377 148404537 -40875017 - MIR3 SINE MIR -15 193 20 21 0 0 0 chr6 148405642 148405663 -40873891 + AT_rich Low_complexity Low_complexity 1 21 0 2393 99 0 3 chr6 148405682 148405995 -40873559 - AluSx SINE Alu 0 312 1 343 375 37 7 chr6 148408335 148408471 -40871083 - L2 LINE L2 0 3272 3133 695 356 55 53 chr6 148408742 148409467 -40870087 - L2 LINE L2 -17 3255 2527 895 257 16 22 chr6 148409551 148409798 -40869756 + MIR SINE MIR 11 257 -5 21 0 0 0 chr6 148410354 148410375 -40869179 + AT_rich Low_complexity Low_complexity 1 21 0 2113 222 45 15 chr6 148411635 148412235 -40867319 + L1ME3A LINE L1 4579 5196 -950 * 25838 23 0 0 chr6 148412227 148415304 -40864250 - L1P LINE L1 -795 5351 2276 388 196 39 0 chr6 148415302 148415404 -40864150 + L1ME3A LINE L1 5195 5300 -846 * 262 306 14 0 chr6 148415596 148415668 -40863886 - L2 LINE L2 -7 3306 3234 459 158 58 4 chr6 148416113 148416231 -40863323 - MER96 DNA MER1_type? 0 175 3 471 214 0 0 chr6 148418386 148418470 -40861084 + FRAM/FAM SINE Alu 5 88 -97 5781 140 23 12 chr6 148418473 148419170 -40860384 - L1MA8 LINE L1 -21 6270 5556 2045 126 30 32 chr6 148419170 148419542 -40860012 + THE1C LTR MaLR 1 371 -4 5781 140 23 12 chr6 148419542 148419902 -40859652 - L1MA8 LINE L1 -735 5556 5202 294 262 183 24 chr6 148419984 148420148 -40859406 + MIR SINE MIR 3 192 -70 222 171 0 0 chr6 148420148 148420189 -40859365 + (CA)n Simple_repeat Simple_repeat 2 42 0 1397 195 50 126 chr6 148420211 148420887 -40858667 + L1ME3A LINE L1 5270 5894 -276 32 26 0 0 chr6 148421905 148421944 -40857610 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr6 148422027 148422056 -40857498 + AT_rich Low_complexity Low_complexity 1 29 0 210 332 97 52 chr6 148422258 148422778 -40856776 - L2 LINE L2 -960 2354 1788 891 176 19 166 chr6 148422778 148423152 -40856402 + MER33 DNA MER1_type 5 323 -1 210 332 97 52 chr6 148423152 148423394 -40856160 - L2 LINE L2 -1526 1788 1558 337 320 109 28 chr6 148424642 148424926 -40854628 - MER102b DNA MER1_type -9 332 26 2189 114 3 7 chr6 148425999 148426358 -40853196 - AluSx SINE Alu 0 312 2 249 307 35 26 chr6 148427113 148427227 -40852327 + MARNA DNA Mariner 72 186 -400 * 844 225 107 71 chr6 148427127 148427549 -40852005 - MARNA DNA Mariner -89 497 61 394 309 16 24 chr6 148427770 148427893 -40851661 - MIR SINE MIR -70 138 17 397 290 72 14 chr6 148428248 148428386 -40851168 + MIR SINE MIR 6 151 -111 184 250 0 0 chr6 148428835 148428866 -40850688 - L2 LINE L2 -83 3230 3197 203 77 0 26 chr6 148428866 148428905 -40850649 + (CAAAA)n Simple_repeat Simple_repeat 5 42 0 220 334 34 34 chr6 148428972 148429145 -40850409 - L2 LINE L2 -310 3003 2836 23055 144 32 26 chr6 148429146 148434004 -40845550 + L1MA3 LINE L1 13 4842 -2882 2310 86 0 3 chr6 148434004 148434306 -40845248 + AluY SINE Alu 1 301 -10 23055 144 32 26 chr6 148434306 148436893 -40842661 + L1MA3 LINE L1 4842 7413 -311 1464 176 7 50 chr6 148436893 148437171 -40842383 + AluJo SINE Alu 3 268 -44 23055 144 32 26 chr6 148437171 148437322 -40842232 + L1MA3 LINE L1 7413 7562 -162 2236 111 0 0 chr6 148437322 148437620 -40841934 + AluSx SINE Alu 2 299 -13 23055 144 32 26 chr6 148437620 148437674 -40841880 + L1MA3 LINE L1 7562 7724 0 435 241 0 0 chr6 148437684 148437821 -40841733 + (TA)n Simple_repeat Simple_repeat 2 138 0 294 306 210 11 chr6 148437825 148438011 -40841543 - L2 LINE L2 -480 2834 2612 787 212 50 0 chr6 148438035 148438214 -40841340 - MER5A DNA MER1_type 0 189 2 310 229 148 0 chr6 148438290 148438412 -40841142 - MER103 DNA DNA -4 162 23 200 227 173 9 chr6 148438959 148439069 -40840485 + MIR SINE MIR 77 204 -58 632 277 96 14 chr6 148440566 148440786 -40838768 + MIR SINE MIR 10 247 -15 493 243 197 7 chr6 148442309 148442461 -40837093 - MER5A DNA MER1_type 0 189 9 557 286 23 0 chr6 148442480 148442651 -40836903 - MER5B DNA MER1_type -3 175 1 300 293 107 5 chr6 148443006 148443211 -40836343 + L2 LINE L2 1546 1771 -1543 201 269 92 23 chr6 148443228 148443358 -40836196 + L2 LINE L2 1884 2022 -1292 * 682 313 44 51 chr6 148443339 148443773 -40835781 + L2 LINE L2 2883 3313 0 372 22 0 0 chr6 148444378 148444423 -40835131 + (TC)n Simple_repeat Simple_repeat 2 46 0 2082 146 0 0 chr6 148446258 148446553 -40833001 - AluSx SINE Alu -17 295 1 21 0 0 0 chr6 148448374 148448395 -40831159 + AT_rich Low_complexity Low_complexity 1 21 0 252 329 13 13 chr6 148449569 148449648 -40829906 - MIR SINE MIR -168 94 16 4826 62 11 0 chr6 148449716 148450328 -40829226 - L1PA7 LINE L1 0 6154 5536 198 294 65 43 chr6 148453210 148453302 -40826252 - L2 LINE L2 -3 3269 3176 25 31 0 0 chr6 148453643 148453675 -40825879 + AT_rich Low_complexity Low_complexity 1 32 0 47 0 0 0 chr6 148453792 148453839 -40825715 + AT_rich Low_complexity Low_complexity 1 47 0 2296 76 0 33 chr6 148454025 148454329 -40825225 + AluY SINE Alu 1 294 -17 22 35 0 0 chr6 148454775 148454804 -40824750 + AT_rich Low_complexity Low_complexity 1 29 0 272 203 25 42 chr6 148456205 148456323 -40823231 + (TA)n Simple_repeat Simple_repeat 2 117 0 285 225 113 0 chr6 148456323 148456403 -40823151 + L2 LINE L2 3165 3253 -19 234 339 25 33 chr6 148457285 148457406 -40822148 + MER5B DNA MER1_type 59 178 0 * 237 260 250 0 chr6 148457406 148457485 -40822069 + L2 LINE L2 3169 3272 0 381 22 0 0 chr6 148457946 148457992 -40821562 + (TG)n Simple_repeat Simple_repeat 2 47 0 335 328 44 68 chr6 148458251 148458501 -40821053 + L3 LINE CR1 444 687 -890 1410 131 44 0 chr6 148458501 148458730 -40820824 + L1PA13 LINE L1 5923 6161 -2 2215 104 0 41 chr6 148458766 148459082 -40820472 + AluSc SINE Alu 1 303 -6 2951 83 0 10 chr6 148459086 148459470 -40820084 - L1PA13 LINE L1 -242 5921 5540 1830 98 4 0 chr6 148459470 148459729 -40819825 + L1PA13 LINE L1 5899 6163 0 2951 83 0 10 chr6 148459729 148459743 -40819811 - L1PA13 LINE L1 -623 5540 5527 385 292 140 54 chr6 148459957 148460437 -40819117 + L3 LINE CR1 988 1508 -69 397 98 16 0 chr6 148460754 148460815 -40818739 + MADE1 DNA Mariner 19 80 0 21919 26 12 0 chr6 148461041 148463824 -40815730 + L1P1 LINE L1 2698 5515 -640 1290 132 26 0 chr6 148464244 148464434 -40815120 + L1MB3 LINE L1 16 210 -6174 6926 209 34 22 chr6 148464436 148464884 -40814670 + L1MB3 LINE L1 1458 1899 -4483 2301 109 0 0 chr6 148464884 148465187 -40814367 + AluY SINE Alu 1 303 -8 6926 209 34 22 chr6 148465187 148466343 -40813211 + L1MB3 LINE L1 1899 3040 -3342 2290 97 0 10 chr6 148466343 148466653 -40812901 - AluSq SINE Alu -6 307 1 6926 209 34 22 chr6 148466653 148468100 -40811454 + L1MB3 LINE L1 3040 4547 -1835 349 305 7 7 chr6 148471037 148471178 -40808376 + (TA)n Simple_repeat Simple_repeat 2 142 0 1159 164 90 68 chr6 148472961 148473272 -40806282 - MER33 DNA MER1_type -2 322 5 790 220 87 5 chr6 148473457 148473675 -40805879 - MER106A DNA MER1_type 0 236 1 203 240 0 20 chr6 148474229 148474279 -40805275 + CT-rich Low_complexity Low_complexity 1 49 0 4581 194 42 4 chr6 148477353 148479021 -40800533 + L1MB3 LINE L1 4678 6411 -8 25 0 0 0 chr6 148479131 148479156 -40800398 + AT_rich Low_complexity Low_complexity 1 25 0 458 306 40 12 chr6 148480156 148480329 -40799225 + L2 LINE L2 2584 2761 -553 1620 168 37 74 chr6 148480580 148480985 -40798569 + MLT1B LTR MaLR 1 390 0 390 278 65 92 chr6 148481285 148481557 -40797997 - MLT1J LTR MaLR -200 311 1 22 0 0 0 chr6 148482053 148482075 -40797479 + AT_rich Low_complexity Low_complexity 1 22 0 723 294 88 18 chr6 148483516 148483744 -40795810 - MIR SINE MIR 0 262 19 602 231 60 97 chr6 148483903 148483949 -40795605 - MIR SINE MIR -1 261 215 2674 45 0 0 chr6 148483949 148484259 -40795295 - AluY SINE Alu -1 310 1 602 231 60 97 chr6 148484259 148484480 -40795074 - MIR SINE MIR -47 215 4 2165 122 0 3 chr6 148484581 148484885 -40794669 + AluSx SINE Alu 1 303 -9 1312 142 0 13 chr6 148484900 148485133 -40794421 - L1MB4 LINE L1 -295 5885 5656 205 237 0 0 chr6 148485133 148485171 -40794383 + (CA)n Simple_repeat Simple_repeat 2 39 0 196 349 46 88 chr6 148485188 148485426 -40794128 - L2 LINE L2 -67 3205 2978 1450 196 107 77 chr6 148485533 148486037 -40793517 + MLT2B1 LTR ERVL 1 519 -1 187 329 13 40 chr6 148486438 148486514 -40793040 + L2 LINE L2 3203 3276 -37 222 37 0 0 chr6 148486514 148486541 -40793013 + (GA)n Simple_repeat Simple_repeat 1 27 0 239 204 0 0 chr6 148486663 148486707 -40792847 + MLT1K LTR MaLR 545 588 0 21 36 0 0 chr6 148487174 148487202 -40792352 + AT_rich Low_complexity Low_complexity 1 28 0 194 195 0 24 chr6 148488072 148488113 -40791441 - MIR SINE MIR -146 62 23 474 264 65 59 chr6 148491246 148491553 -40788001 - L1 LINE L1 -1623 4523 4215 412 173 96 130 chr6 148491749 148491964 -40787590 - L1MC5 LINE L1 -219 7742 7540 2577 51 0 0 chr6 148491964 148492260 -40787294 - AluY SINE Alu -15 296 1 412 173 96 130 chr6 148492260 148492367 -40787187 - L1MC5 LINE L1 -421 7540 7431 310 257 96 43 chr6 148493430 148493617 -40785937 + L2 LINE L2 2173 2369 -945 476 296 115 48 chr6 148493621 148494234 -40785320 + L2 LINE L2 2546 3215 -98 1476 157 50 60 chr6 148494280 148494567 -40784987 + AluJb SINE Alu 1 284 -28 187 43 0 0 chr6 148494567 148494590 -40784964 + (GAAAA)n Simple_repeat Simple_repeat 2 165 0 982 174 0 6 chr6 148495015 148495176 -40784378 - FRAM SINE Alu -20 156 1 316 321 102 65 chr6 148495811 148496418 -40783136 - L2 LINE L2 -89 3183 2542 188 346 12 12 chr6 148496484 148496565 -40782989 - L2 LINE L2 -840 2474 2394 222 323 16 0 chr6 148497992 148498054 -40781500 - MIR SINE MIR -97 111 49 707 86 0 0 chr6 148498765 148498858 -40780696 - AluSc SINE Alu -8 301 209 4270 162 68 12 chr6 148498873 148499814 -40779740 - L1MB3 LINE L1 0 6183 5196 588 307 55 65 chr6 148499877 148500310 -40779244 + MLT1K LTR MaLR 147 575 -13 1579 222 52 78 chr6 148502235 148502788 -40776766 - MLT1F LTR MaLR 0 542 4 211 248 208 20 chr6 148502920 148503021 -40776533 + MIR SINE MIR 88 207 -55 592 151 176 6 chr6 148503632 148503791 -40775763 + MER53 DNA DNA 4 189 0 301 297 31 76 chr6 148503819 148504109 -40775445 - L2 LINE L2 -459 2855 2579 459 310 95 13 chr6 148504217 148504375 -40775179 - MER5B DNA MER1_type -6 172 2 22 35 0 0 chr6 148504562 148504591 -40774963 + AT_rich Low_complexity Low_complexity 1 29 0 1589 185 44 0 chr6 148504591 148504861 -40774693 - AluJo SINE Alu -30 282 1 1780 124 9 41 chr6 148505199 148505514 -40774040 + MER1B DNA MER1_type 35 339 0 225 0 0 0 chr6 148506429 148506454 -40773100 + (TG)n Simple_repeat Simple_repeat 2 26 0 198 0 0 0 chr6 148506453 148506475 -40773079 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 232 261 0 0 chr6 148506566 148506612 -40772942 - L2 LINE L2 -5 3308 3263 1519 83 0 66 chr6 148507398 148507626 -40771928 - AluY SINE Alu -3 308 96 298 49 0 0 chr6 148508340 148508381 -40771173 + MADE1 DNA Mariner 40 80 0 338 245 19 9 chr6 148508557 148508663 -40770891 - L1MC5 LINE L1 -525 7436 7330 285 75 0 0 chr6 148508665 148508705 -40770849 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 245 143 143 0 chr6 148508763 148508826 -40770728 - L1MC5 LINE L1 -747 7214 7143 1475 182 32 62 chr6 148508829 148509202 -40770352 + MLT1A1 LTR MaLR 4 365 0 634 221 23 17 chr6 148509258 148509430 -40770124 - Charlie1a DNA MER1_type -1030 425 253 1726 168 0 31 chr6 148509492 148509783 -40769771 + AluJo SINE Alu 12 293 -19 836 252 39 12 chr6 148509808 148510066 -40769488 - Charlie1a DNA MER1_type -1185 270 6 184 333 58 37 chr6 148510252 148510441 -40769113 + L2 LINE L2 3113 3305 -8 2673 101 16 3 chr6 148510441 148510827 -40768727 - MLT2A2 LTR ERVL -62 391 1 23 86 0 0 chr6 148511537 148511595 -40767959 + AT_rich Low_complexity Low_complexity 1 58 0 1539 186 14 14 chr6 148512537 148512827 -40766727 - AluSx SINE Alu -22 290 1 1746 168 114 8 chr6 148513022 148513380 -40766174 - MSTD LTR MaLR 0 396 1 181 73 24 49 chr6 148513638 148513679 -40765875 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 297 294 128 0 chr6 148514082 148514191 -40765363 - L2 LINE L2 0 3313 3191 236 337 215 0 chr6 148514288 148514493 -40765061 - MIR SINE MIR -10 252 4 1100 173 82 141 chr6 148514826 148515266 -40764288 - MLT2D LTR ERVL 0 414 1 256 193 0 9 chr6 148515381 148515449 -40764105 - MLT2C2 LTR ERVL 0 464 417 2245 190 39 43 chr6 148515475 148515992 -40763562 - MLT2B3 LTR ERVL -39 515 1 234 222 26 60 chr6 148516019 148516136 -40763418 + L1MC/D LINE L1 5320 5432 -730 5058 126 36 7 chr6 148516241 148517434 -40762120 - L1PA15 LINE L1 0 6165 4934 328 269 69 69 chr6 148517508 148517683 -40761871 + L1MC/D LINE L1 5633 5807 -2001 1362 165 0 22 chr6 148517754 148517978 -40761576 - AluJb SINE Alu -93 219 1 21 0 0 0 chr6 148517996 148518017 -40761537 + AT_rich Low_complexity Low_complexity 1 21 0 2073 97 48 3 chr6 148518949 148519238 -40760316 + AluSx SINE Alu 1 302 -10 839 181 79 11 chr6 148519399 148519576 -40759978 + MER5A DNA MER1_type 1 189 0 258 244 0 24 chr6 148519757 148519839 -40759715 + (TA)n Simple_repeat Simple_repeat 1 80 0 1323 151 46 0 chr6 148519839 148520078 -40759476 - Tigger2 DNA MER2_type 0 2718 2469 3929 141 32 30 chr6 148520151 148520894 -40758660 - Tigger2 DNA MER2_type -1973 745 1 2535 263 121 97 chr6 148521028 148522041 -40757513 + L2 LINE L2 1292 2280 -1033 370 145 0 16 chr6 148522041 148522103 -40757451 - MER90 LTR ERV1 -547 67 7 2535 263 121 97 chr6 148522103 148522998 -40756556 + L2 LINE L2 2280 3308 -5 241 322 52 17 chr6 148523194 148523309 -40756245 + MIR SINE MIR 28 146 -62 272 302 82 38 chr6 148525404 148525563 -40753991 - MIR3 SINE MIR 0 208 43 296 295 11 53 chr6 148525597 148525692 -40753862 + L2 LINE L2 3223 3313 0 10765 125 23 91 chr6 148525755 148528607 -40750947 + L1PA7 LINE L1 1 2776 -3685 248 47 0 70 chr6 148528798 148528824 -40750730 + (A)n Simple_repeat Simple_repeat 1 24 -16 20489 100 11 5 chr6 148528824 148532631 -40746923 + L1PA7 LINE L1 2625 6466 -3 248 47 0 70 chr6 148532631 148532647 -40746907 + (A)n Simple_repeat Simple_repeat 24 40 0 1786 184 3 3 chr6 148533087 148533381 -40746173 - AluJb SINE Alu -18 294 1 289 238 0 114 chr6 148534604 148534709 -40744845 + MIR SINE MIR 97 189 -73 243 0 0 0 chr6 148535145 148535172 -40744382 + (T)n Simple_repeat Simple_repeat 1 27 0 198 118 0 0 chr6 148535929 148535963 -40743591 + (TG)n Simple_repeat Simple_repeat 1 34 0 313 279 4 128 chr6 148536371 148536597 -40742957 + MLT1J LTR MaLR 110 307 -204 189 401 87 38 chr6 148537249 148537593 -40741961 + L2 LINE L2 2907 3267 -5 1578 163 9 59 chr6 148538885 148539205 -40740349 - AluJb SINE Alu -8 304 1 244 301 48 0 chr6 148539448 148539531 -40740023 + MIR SINE MIR 95 181 -81 378 73 0 0 chr6 148539532 148539587 -40739967 - MLT2A2 LTR ERVL 0 453 399 310 234 0 0 chr6 148539588 148539652 -40739902 + L1MC4 LINE L1 6640 6703 -1339 * 321 305 0 29 chr6 148539612 148539717 -40739837 - L1MC4 LINE L1 -1339 6703 6602 575 206 0 24 chr6 148539752 148539878 -40739676 - MSTC LTR MaLR -298 130 8 8436 193 99 8 chr6 148539887 148541762 -40737792 + ERVL-C1 LTR ERVL 3711 5756 -8 1310 224 19 51 chr6 148541762 148542172 -40737382 + MLT2C1 LTR ERVL 1 397 0 188 86 29 0 chr6 148542177 148542212 -40737342 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 238 298 0 0 chr6 148542781 148542838 -40736716 - L2 LINE L2 0 3272 3216 205 329 0 24 chr6 148543707 148543792 -40735762 + A-rich Low_complexity Low_complexity 5 87 0 691 242 117 33 chr6 148543798 148544038 -40735516 - MIR SINE MIR 0 262 3 264 301 70 129 chr6 148545571 148545873 -40733681 - L2 LINE L2 -6 3266 2983 442 334 129 28 chr6 148546259 148546684 -40732870 - L2 LINE L2 -560 2754 2287 326 308 77 0 chr6 148548160 148548264 -40731290 - L2 LINE L2 -12 3301 3190 221 232 0 36 chr6 148548362 148548418 -40731136 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 202 224 0 41 chr6 148549593 148549642 -40729912 - L2 LINE L2 -92 3221 3175 223 259 35 0 chr6 148550068 148550126 -40729428 - L2 LINE L2 -5 3308 3249 293 335 21 68 chr6 148550645 148550836 -40728718 - MER5A DNA MER1_type -1 188 7 2443 77 0 13 chr6 148552285 148552598 -40726956 + AluY SINE Alu 1 309 -2 21 0 0 0 chr6 148552878 148552899 -40726655 + AT_rich Low_complexity Low_complexity 1 21 0 224 364 14 36 chr6 148553350 148553379 -40726175 + MER5A DNA MER1_type 2 30 -159 7193 55 10 0 chr6 148553379 148554441 -40725113 - L1PA8 LINE L1 0 6172 5106 224 364 14 36 chr6 148554441 148554551 -40725003 + MER5A DNA MER1_type 30 138 -51 * 487 269 10 0 chr6 148554448 148554552 -40725002 - MER5A DNA MER1_type -23 166 62 2013 120 10 3 chr6 148554576 148554867 -40724687 - AluSx SINE Alu 0 312 20 249 259 0 0 chr6 148554870 148554924 -40724630 - MER5A DNA MER1_type -116 73 20 3100 171 42 70 chr6 148555547 148555919 -40723635 - L1MB3 LINE L1 -2 6181 5800 333 0 0 0 chr6 148555919 148555956 -40723598 + (TG)n Simple_repeat Simple_repeat 2 38 0 3100 171 42 70 chr6 148555956 148556394 -40723160 - L1MB3 LINE L1 -383 5800 5394 1442 76 28 0 chr6 148556394 148556605 -40722949 - MLT2A1 LTR ERVL 0 444 228 28399 72 8 3 chr6 148556605 148557816 -40721738 - HERVL-A1 LTR ERVL -1831 3823 2620 3676 97 12 4 chr6 148557816 148558323 -40721231 - MER9 LTR ERVK 0 511 1 28399 72 8 3 chr6 148558323 148560913 -40718641 - HERVL-A1 LTR ERVL -3034 2620 2 231 188 0 0 chr6 148560929 148560977 -40718577 - MLT2A1 LTR ERVL -7 437 390 210 143 0 0 chr6 148560981 148561016 -40718538 + (TG)n Simple_repeat Simple_repeat 2 36 0 379 235 10 39 chr6 148561037 148561139 -40718415 + L1MC4 LINE L1 6605 6703 -1339 2791 99 2 5 chr6 148561146 148561550 -40718004 - MLT2A1 LTR ERVL -41 403 1 1653 207 24 27 chr6 148561553 148562003 -40717551 - L1MB3 LINE L1 -751 5395 4947 2473 83 3 6 chr6 148562086 148562399 -40717155 - AluSp SINE Alu -1 312 1 2086 90 32 7 chr6 148562412 148562690 -40716864 - AluSc SINE Alu -24 285 1 285 29 0 0 chr6 148563110 148563144 -40716410 + (CAT)n Simple_repeat Simple_repeat 1 34 0 192 321 71 0 chr6 148563145 148563229 -40716325 - MIR SINE MIR -14 248 159 30 45 0 0 chr6 148563647 148563691 -40715863 + AT_rich Low_complexity Low_complexity 1 44 0 270 262 131 0 chr6 148563892 148563999 -40715555 + L1ME4a LINE L1 5970 6090 -31 427 296 70 27 chr6 148564818 148565004 -40714550 + L1MC5 LINE L1 7732 7925 -36 265 328 8 74 chr6 148566229 148566351 -40713203 - L2 LINE L2 0 3272 3159 21 0 0 0 chr6 148566477 148566498 -40713056 + AT_rich Low_complexity Low_complexity 1 21 0 216 274 0 0 chr6 148567756 148567807 -40711747 + L2 LINE L2 3251 3301 -12 2026 105 3 57 chr6 148567938 148568252 -40711302 + AluSx SINE Alu 2 298 -14 31 68 0 0 chr6 148569633 148569692 -40709862 + AT_rich Low_complexity Low_complexity 1 59 0 374 330 89 16 chr6 148570020 148570299 -40709255 + L1M4 LINE L1 5336 5634 -550 2244 103 26 29 chr6 148571914 148572226 -40707328 + AluSx SINE Alu 1 311 -1 238 194 0 0 chr6 148572291 148572353 -40707201 + L1M4 LINE L1 4975 5036 -1110 2445 40 10 7 chr6 148572899 148573200 -40706354 + AluY SINE Alu 1 302 -9 1919 217 126 23 chr6 148573315 148573677 -40705877 + L1MDa LINE L1 17 340 -6200 408 20 0 0 chr6 148573677 148573726 -40705828 + (CA)n Simple_repeat Simple_repeat 1 49 0 1919 217 126 23 chr6 148573726 148574252 -40705302 + L1MDa LINE L1 340 1331 -5209 894 47 16 8 chr6 148574268 148574397 -40705157 + (GAA)n Simple_repeat Simple_repeat 2 131 0 1135 204 79 8 chr6 148574400 148574640 -40704914 + AluJb SINE Alu 30 286 -26 1070 174 10 19 chr6 148574640 148574948 -40704606 + L1MD1 LINE L1 5898 6236 -6 766 289 30 18 chr6 148574995 148575331 -40704223 + L1M4 LINE L1 3350 3689 -2457 1680 163 87 36 chr6 148575413 148575770 -40703784 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr6 148576588 148576618 -40702936 + AT_rich Low_complexity Low_complexity 1 30 0 631 331 52 67 chr6 148626732 148627119 -40652435 + L2 LINE L2 2888 3268 -4 2350 60 0 0 chr6 148627440 148627721 -40651833 + AluY SINE Alu 28 308 -3 25 0 0 0 chr6 148628662 148628687 -40650867 + AT_rich Low_complexity Low_complexity 1 25 0 187 324 80 40 chr6 148629162 148629338 -40650216 + MIR3 SINE MIR 19 201 -7 456 259 36 0 chr6 148630114 148630226 -40649328 - L2 LINE L2 -5 3308 3193 402 275 109 0 chr6 148630230 148630377 -40649177 + MIR SINE MIR 98 259 -3 231 366 138 32 chr6 148630623 148631030 -40648524 - L2 LINE L2 -536 2778 2329 251 315 111 12 chr6 148631070 148631232 -40648322 - L2 LINE L2 -1192 2122 1945 196 343 7 50 chr6 148631267 148631407 -40648147 - L2 LINE L2 -2880 434 301 213 121 0 0 chr6 148632015 148632048 -40647506 + (A)n Simple_repeat Simple_repeat 1 33 0 1064 240 76 91 chr6 148632411 148632974 -40646580 + MLT1H1 LTR MaLR 1 555 0 347 293 48 24 chr6 148633149 148633316 -40646238 + MLT1H1-int LTR MaLR 292 462 -909 248 365 115 21 chr6 148633713 148633905 -40645649 + MLT1H1-int LTR MaLR 694 903 -468 252 260 35 158 chr6 148634104 148634446 -40645108 + MLT1H1-int LTR MaLR 1072 1371 0 807 269 144 28 chr6 148634449 148634913 -40644641 + MLT1H1 LTR MaLR 7 579 -16 230 319 17 8 chr6 148635244 148635363 -40644191 + (TATG)n Simple_repeat Simple_repeat 4 123 0 36 0 0 0 chr6 148636955 148636991 -40642563 + AT_rich Low_complexity Low_complexity 1 36 0 2016 138 7 0 chr6 148637328 148637626 -40641928 - AluSx SINE Alu -12 300 1 415 272 32 19 chr6 148640277 148640435 -40639119 + GA-rich Low_complexity Low_complexity 6 165 0 2462 148 57 18 chr6 148640640 148641139 -40638415 - L1 LINE L1 -2706 3440 2915 2137 101 54 0 chr6 148641139 148641436 -40638118 - AluSq SINE Alu 0 313 1 2462 148 57 18 chr6 148641436 148641498 -40638056 - L1 LINE L1 -3231 2915 2857 1085 191 18 1 chr6 148641507 148641803 -40637751 + MER2 DNA MER2_type 6 345 0 1210 192 0 0 chr6 148641804 148642028 -40637526 - L1 LINE L1 -3293 2853 2630 439 257 167 40 chr6 148642196 148642418 -40637136 - L1M4 LINE L1 -2590 3556 3307 198 143 0 0 chr6 148642442 148642477 -40637077 + (TC)n Simple_repeat Simple_repeat 1 35 0 2272 62 0 31 chr6 148642537 148642887 -40636667 - AluY SINE Alu 0 341 1 286 256 37 0 chr6 148643259 148643341 -40636213 + LTR16C LTR ERVL 405 489 -2 1062 290 86 14 chr6 148643556 148644321 -40635233 - L1MEc LINE L1 -2391 3824 3005 382 315 51 71 chr6 148644322 148644716 -40634838 - L1MEc LINE L1 -3247 2968 2583 340 335 78 0 chr6 148644771 148645102 -40634452 - L1MEc LINE L1 -3735 2480 2134 402 264 53 83 chr6 148645996 148646261 -40633293 + L2 LINE L2 3056 3312 -1 701 275 65 23 chr6 148646455 148646717 -40632837 + MER45C DNA AcHobo 1 273 -680 287 247 68 0 chr6 148646892 148646965 -40632589 + MER45C DNA AcHobo 876 953 0 21 0 0 0 chr6 148647278 148647299 -40632255 + AT_rich Low_complexity Low_complexity 1 21 0 2306 127 27 16 chr6 148648871 148649242 -40630312 - THE1C LTR MaLR 0 375 1 7748 122 35 7 chr6 148649242 148650467 -40629087 - THE1C-int LTR MaLR 0 1580 322 978 83 0 7 chr6 148650459 148650604 -40628950 - THE1C-int LTR MaLR -1436 144 1 * 1885 160 38 19 chr6 148650604 148650972 -40628582 - THE1C LTR MaLR 0 375 1 265 314 86 0 chr6 148651548 148651688 -40627866 + MER117 DNA MER1_type 7 158 -39 212 344 152 40 chr6 148652066 148652138 -40627416 + L2 LINE L2 3034 3097 -175 321 26 0 0 chr6 148652138 148652176 -40627378 + (TG)n Simple_repeat Simple_repeat 1 38 0 212 344 152 40 chr6 148652176 148652228 -40627326 + L2 LINE L2 3097 3172 -100 3874 184 79 14 chr6 148652240 148653177 -40626377 - L1MA6 LINE L1 -3 6297 5300 17348 195 50 31 chr6 148653186 148653960 -40625594 - L1PA14 LINE L1 -4 7595 6838 2312 105 0 0 chr6 148653960 148654265 -40625289 - AluSg SINE Alu -5 305 1 17348 195 50 31 chr6 148654265 148657438 -40622116 - L1PA14 LINE L1 -761 6838 3728 2207 125 0 0 chr6 148657438 148657735 -40621819 - AluSg SINE Alu -13 297 1 17348 195 50 31 chr6 148657735 148660621 -40618933 - L1PA14 LINE L1 -3871 3728 6 1662 189 3 7 chr6 148660629 148660920 -40618634 - AluJo SINE Alu -18 294 5 5040 145 9 1 chr6 148660923 148661818 -40617736 - L1MA6 LINE L1 -813 5333 4432 246 182 57 0 chr6 148661819 148661907 -40617647 - L1MB3 LINE L1 -3 6180 6088 * 4035 161 38 3 chr6 148661906 148662606 -40616948 - L1MA4 LINE L1 -282 6018 5274 216 0 0 0 chr6 148662606 148662630 -40616924 + (TTA)n Simple_repeat Simple_repeat 2 25 0 4035 161 38 3 chr6 148662630 148662994 -40616560 - L1MA4 LINE L1 -1026 5274 4924 1796 135 24 3 chr6 148662993 148663326 -40616228 - L1MA6 LINE L1 -1710 4436 4097 * 295 175 0 0 chr6 148663333 148663390 -40616164 - L1MA6 LINE L1 -2109 4037 3981 309 203 0 0 chr6 148663392 148663461 -40616093 + L1 LINE L1 3867 3935 -2211 218 243 100 0 chr6 148663999 148664069 -40615485 - L2 LINE L2 -1257 2057 1981 2722 295 145 27 chr6 148664091 148664965 -40614589 - L2 LINE L2 -116 3197 2427 2298 95 0 23 chr6 148664965 148665271 -40614283 + AluSx SINE Alu 1 299 -13 2722 295 145 27 chr6 148665271 148666109 -40613445 - L2 LINE L2 -886 2427 1269 2204 127 27 11 chr6 148667557 148667926 -40611628 + THE1C LTR MaLR 1 375 0 322 305 119 7 chr6 148668897 148669048 -40610506 - MIR SINE MIR -26 236 69 1387 220 49 123 chr6 148669847 148670462 -40609092 + MER77 LTR ERV1 54 599 -6 252 379 52 0 chr6 148670678 148670794 -40608760 + L2 LINE L2 3133 3254 -18 223 288 0 0 chr6 148670806 148670865 -40608689 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 2039 123 0 4 chr6 148671511 148671787 -40607767 + AluSq SINE Alu 1 275 -38 1056 146 0 0 chr6 148671787 148671808 -40607746 + (GGGGA)n Simple_repeat Simple_repeat 1 199 0 1056 146 0 0 chr6 148671808 148671986 -40607568 + (GGGGA)n Simple_repeat Simple_repeat 3 180 0 2257 147 54 8 chr6 148672039 148672427 -40607127 - MSTB LTR MaLR -20 406 1 205 245 0 0 chr6 148672587 148672640 -40606914 + MIR SINE MIR 146 198 -64 228 380 84 16 chr6 148672867 148673117 -40606437 - L2 LINE L2 -424 2890 2624 482 135 0 14 chr6 148673147 148673221 -40606333 + AluSg/x SINE Alu 216 288 -24 226 398 71 0 chr6 148673254 148673352 -40606202 + L2 LINE L2 3163 3267 -5 23 33 0 0 chr6 148673437 148673467 -40606087 + AT_rich Low_complexity Low_complexity 1 30 0 430 353 114 33 chr6 148674133 148674237 -40605317 + L2 LINE L2 2511 2605 -667 1824 143 42 70 chr6 148674237 148674623 -40604931 + THE1C LTR MaLR 1 375 0 430 353 114 33 chr6 148674623 148675203 -40604351 + L2 LINE L2 2605 3272 0 738 215 0 0 chr6 148676192 148676322 -40603232 - FLAM_C SINE Alu -3 130 1 2392 73 0 13 chr6 148676436 148676749 -40602805 + AluY SINE Alu 1 309 -2 24 77 0 0 chr6 148676873 148676925 -40602629 + AT_rich Low_complexity Low_complexity 1 52 0 922 159 0 0 chr6 148677115 148677266 -40602288 + AluJb SINE Alu 147 297 -15 1967 132 73 20 chr6 148677653 148678009 -40601545 - THE1C LTR MaLR 0 375 1 27 0 0 0 chr6 148678094 148678121 -40601433 + AT_rich Low_complexity Low_complexity 1 27 0 193 217 0 87 chr6 148680387 148680456 -40599098 + MER5B DNA MER1_type 89 151 -27 664 288 112 26 chr6 148680711 148681177 -40598377 - MLT1J LTR MaLR -2 509 4 21 57 0 0 chr6 148681424 148681459 -40598095 + AT_rich Low_complexity Low_complexity 1 35 0 4889 257 151 42 chr6 148682033 148682824 -40596730 + L2 LINE L2 748 1451 -1862 1965 121 40 79 chr6 148682824 148683203 -40596351 - THE1B LTR MaLR 0 364 1 4889 257 151 42 chr6 148683203 148683832 -40595722 + L2 LINE L2 1451 2010 -1303 661 294 119 35 chr6 148683832 148684209 -40595345 - MLT1I LTR MaLR 0 409 1 4889 257 151 42 chr6 148684209 148684479 -40595075 + L2 LINE L2 2010 2249 -1064 3594 128 47 19 chr6 148684479 148685097 -40594457 - L1PA16 LINE L1 -5 6161 5527 4889 257 151 42 chr6 148685097 148685714 -40593840 + L2 LINE L2 2249 3313 0 1004 164 49 6 chr6 148686194 148686377 -40593177 - MER20 DNA MER1_type 0 219 29 26 50 0 0 chr6 148686967 148687007 -40592547 + AT_rich Low_complexity Low_complexity 1 40 0 4241 143 9 23 chr6 148687422 148688173 -40591381 + L1PB4 LINE L1 5409 6149 -7 21 0 0 0 chr6 148688179 148688200 -40591354 + AT_rich Low_complexity Low_complexity 1 21 0 2032 130 3 7 chr6 148688715 148689008 -40590546 - AluSx SINE Alu -16 296 5 2417 83 0 0 chr6 148689185 148689485 -40590069 - AluY SINE Alu -11 300 1 6603 70 7 6 chr6 148691417 148692402 -40587152 + L1PA13 LINE L1 5190 6153 -10 466 283 22 14 chr6 148692468 148692606 -40586948 - MIR SINE MIR -106 156 18 1170 85 0 0 chr6 148692777 148692954 -40586600 + (TA)n Simple_repeat Simple_repeat 1 177 0 200 271 0 0 chr6 148693947 148693995 -40585559 + MIR SINE MIR 65 112 -150 888 291 102 27 chr6 148693997 148694633 -40584921 - L2 LINE L2 -2 3311 2632 373 298 21 0 chr6 148694629 148694723 -40584831 + MIR SINE MIR 39 134 -128 * 220 197 42 0 chr6 148695221 148695292 -40584262 + (TA)n Simple_repeat Simple_repeat 2 75 0 2242 111 10 0 chr6 148695881 148696188 -40583366 + AluSx SINE Alu 1 310 -2 855 158 0 0 chr6 148696698 148696865 -40582689 + FRAM SINE Alu 19 185 0 190 0 0 0 chr6 148698012 148698033 -40581521 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 2135 103 0 0 chr6 148698033 148698315 -40581239 - AluSq SINE Alu -31 282 1 1266 87 0 0 chr6 148698326 148698498 -40581056 - AluSg/x SINE Alu -1 311 140 211 217 87 113 chr6 148698710 148698825 -40580729 + L2 LINE L2 3126 3237 -35 1089 243 94 8 chr6 148699160 148699543 -40580011 - MLT1C LTR MaLR -44 423 8 674 261 119 0 chr6 148699550 148699853 -40579701 + L1M4 LINE L1 2527 2865 -3281 21 0 0 0 chr6 148700902 148700923 -40578631 + AT_rich Low_complexity Low_complexity 1 21 0 277 238 12 0 chr6 148702458 148702538 -40577016 - Charlie8 DNA MER1_type -2270 147 67 188 357 14 0 chr6 148702634 148702704 -40576850 + MIR SINE MIR 79 149 -59 2097 125 6 29 chr6 148703186 148703498 -40576056 + AluSx SINE Alu 1 305 -7 283 221 52 0 chr6 148703906 148704042 -40575512 + (TA)n Simple_repeat Simple_repeat 1 143 0 2847 144 27 8 chr6 148707188 148707668 -40571886 + L1PA15 LINE L1 5677 6165 0 234 0 0 0 chr6 148707910 148707936 -40571618 + (CA)n Simple_repeat Simple_repeat 1 26 0 2290 103 7 0 chr6 148708925 148709235 -40570319 + AluSx SINE Alu 1 312 0 2115 161 4 109 chr6 148709928 148710395 -40569159 - MER47B DNA MER2_type 0 418 1 1919 156 14 8 chr6 148710819 148711178 -40568376 + L1MB7 LINE L1 5675 6035 -149 183 292 69 14 chr6 148711232 148711304 -40568250 + L2 LINE L2 2453 2528 -786 1763 152 58 0 chr6 148711762 148712039 -40567515 + AluJb SINE Alu 4 296 -16 359 292 70 35 chr6 148716156 148716440 -40563114 + L1ME LINE L1 5416 5709 -412 526 303 127 55 chr6 148716725 148717290 -40562264 - L1M4 LINE L1 -813 5333 4728 261 247 62 0 chr6 148717381 148717462 -40562092 - L1M4 LINE L1 -1542 4604 4519 450 247 11 132 chr6 148717576 148717689 -40561865 + MIR SINE MIR 82 164 -98 2925 6 0 0 chr6 148717689 148718006 -40561548 + AluYb8 SINE Alu 1 317 -1 450 247 11 132 chr6 148718006 148718082 -40561472 + MIR SINE MIR 164 248 -14 281 285 44 10 chr6 148718203 148718354 -40561200 - L1 LINE L1 -1907 4239 4080 23 78 0 0 chr6 148718400 148718451 -40561103 + AT_rich Low_complexity Low_complexity 1 51 0 5542 95 0 7 chr6 148718452 148719264 -40560290 - L1PA14 LINE L1 -3 7596 6791 2433 97 0 0 chr6 148719296 148719605 -40559949 - AluSc SINE Alu 0 309 1 17896 172 17 11 chr6 148719608 148725438 -40554116 - L1PA14 LINE L1 -783 6801 939 2349 122 0 0 chr6 148725446 148725806 -40553748 - THE1C-int LTR MaLR -1218 362 3 2115 132 11 42 chr6 148725808 148726188 -40553366 - THE1C LTR MaLR 0 375 8 3067 72 0 0 chr6 148726188 148726592 -40552962 + MLT2A1 LTR ERVL 1 404 -40 217 200 0 0 chr6 148726592 148726627 -40552927 + (CA)n Simple_repeat Simple_repeat 2 36 0 377 73 0 0 chr6 148726627 148726682 -40552872 + MLT2A1 LTR ERVL 390 444 0 22 0 0 0 chr6 148727094 148727116 -40552438 + AT_rich Low_complexity Low_complexity 1 22 0 1483 190 16 0 chr6 148727146 148727462 -40552092 + LTR56 LTR ERV1 111 431 -14 624 266 140 36 chr6 148728003 148728225 -40551329 - MIR SINE MIR -15 247 3 679 346 23 53 chr6 148728442 148728461 -40551093 - L2 LINE L2 -518 2796 2778 1754 187 67 0 chr6 148728461 148728803 -40550751 + MLT1A1 LTR MaLR 1 365 0 679 346 23 53 chr6 148728803 148729176 -40550378 - L2 LINE L2 -536 2778 2416 1136 181 63 100 chr6 148729341 148729461 -40550093 + AluJo SINE Alu 28 151 -161 7727 24 0 0 chr6 148729461 148730361 -40549193 + L1PA3 LINE L1 5254 6153 -2 1136 181 63 100 chr6 148730361 148730510 -40549044 + AluJo SINE Alu 151 287 -25 32 57 0 0 chr6 148730510 148730563 -40548991 + AT_rich Low_complexity Low_complexity 1 53 0 259 323 128 0 chr6 148730767 148730900 -40548654 + MIR SINE MIR 86 235 -27 237 266 40 57 chr6 148731700 148731824 -40547730 - MIR SINE MIR 0 262 141 222 290 16 0 chr6 148732247 148732309 -40547245 + L2 LINE L2 3246 3308 -5 247 379 90 36 chr6 148732646 148733034 -40546520 - L2 LINE L2 -925 2389 1981 339 321 103 18 chr6 148733036 148733201 -40546353 + L1MC4a LINE L1 5704 5882 -1926 24 53 0 0 chr6 148733239 148733277 -40546277 + AT_rich Low_complexity Low_complexity 1 38 0 222 318 42 62 chr6 148733493 148733685 -40545869 - L2 LINE L2 -1307 2007 1820 1709 174 0 0 chr6 148733950 148734214 -40545340 + AluJb SINE Alu 1 264 -48 501 143 11 0 chr6 148734214 148734305 -40545249 + AluJ/FRAM SINE Alu 221 312 0 1509 39 0 0 chr6 148734348 148734527 -40545027 - AluY SINE Alu 0 311 133 288 199 28 106 chr6 148735445 148735586 -40543968 - L1ME3A LINE L1 -243 5927 5798 264 120 20 20 chr6 148735655 148735705 -40543849 + AluSp/q SINE Alu 243 292 -11 714 342 92 33 chr6 148736316 148736596 -40542958 + L1M4 LINE L1 3954 4216 -1930 1856 155 21 37 chr6 148736596 148736977 -40542577 + THE1C LTR MaLR 1 375 0 2386 99 33 36 chr6 148736979 148737344 -40542210 + THE1B LTR MaLR 1 364 0 714 342 92 33 chr6 148737344 148737780 -40541774 + L1M4 LINE L1 4216 4715 -1431 3779 202 11 20 chr6 148737864 148738784 -40540770 + L1PA16 LINE L1 4407 5318 -828 768 148 0 0 chr6 148738784 148738912 -40540642 + AluSc SINE Alu 182 309 0 21 36 0 0 chr6 148739208 148739236 -40540318 + GC_rich Low_complexity Low_complexity 1 28 0 2711 74 22 73 chr6 148739287 148740158 -40539396 + SVA Other Other 393 868 -592 6873 58 6 42 chr6 148740171 148741160 -40538394 + SVA Other Other 433 1386 0 4726 129 30 14 chr6 148741163 148742000 -40537554 + L1PA16 LINE L1 5317 6166 0 381 268 127 40 chr6 148742141 148742440 -40537114 - LTR16C LTR ERVL 0 491 167 1152 153 5 10 chr6 148743193 148743395 -40536159 + L1PA15 LINE L1 5958 6158 -7 1661 172 4 0 chr6 148743672 148743945 -40535609 - AluSx SINE Alu -12 300 27 837 297 58 25 chr6 148743952 148744349 -40535205 + LTR16A LTR ERVL 27 436 -14 2184 95 7 0 chr6 148744640 148744924 -40534630 - AluSg SINE Alu -24 286 1 21 36 0 0 chr6 148745100 148745128 -40534426 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr6 148746114 148746164 -40533390 + AT_rich Low_complexity Low_complexity 1 50 0 2357 146 28 21 chr6 148746280 148746705 -40532849 - MSTA LTR MaLR 0 428 1 404 295 23 28 chr6 148747281 148747446 -40532108 + MIR SINE MIR 7 174 -34 305 288 81 18 chr6 148747435 148747546 -40532008 + L2 LINE L2 3196 3313 0 * 210 230 180 20 chr6 148747531 148747631 -40531923 + MIR SINE MIR 141 256 -6 * 23 33 0 0 chr6 148749716 148749746 -40529808 + AT_rich Low_complexity Low_complexity 1 30 0 507 127 0 0 chr6 148750576 148750668 -40528886 - AluY SINE Alu 0 307 216 2013 61 0 4 chr6 148750668 148750914 -40528640 - AluY SINE Alu -66 245 1 349 174 314 25 chr6 148750967 148750980 -40528574 - L1MA10 LINE L1 -1 6333 6321 2205 231 86 33 chr6 148750980 148751676 -40527878 - L1ME1 LINE L1 -5 6161 5429 2088 238 54 17 chr6 148752525 148753207 -40526347 - L1ME1 LINE L1 -745 5401 4730 1920 65 0 148 chr6 148753219 148753570 -40525984 + AluY SINE Alu 1 299 -12 27 0 0 0 chr6 148753570 148753597 -40525957 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr6 148754149 148754188 -40525366 + AT_rich Low_complexity Low_complexity 1 39 0 250 236 13 13 chr6 148754505 148754663 -40524891 + GA-rich Low_complexity Low_complexity 1 158 0 476 300 144 40 chr6 148754691 148755274 -40524280 + L1MC4a LINE L1 5270 5913 -1895 1818 162 0 7 chr6 148756072 148756362 -40523192 - AluJb SINE Alu -24 288 1 2294 112 0 0 chr6 148757264 148757568 -40521986 - AluSq SINE Alu -9 304 1 211 328 52 17 chr6 148757584 148757700 -40521854 + L3 LINE CR1 1426 1545 -32 24 0 0 0 chr6 148759295 148759319 -40520235 + AT_rich Low_complexity Low_complexity 1 24 0 401 317 59 11 chr6 148759336 148759522 -40520032 + MIR SINE MIR 63 257 -5 37 39 0 0 chr6 148759786 148759837 -40519717 + AT_rich Low_complexity Low_complexity 1 51 0 464 241 143 36 chr6 148759942 148760307 -40519247 + L1M4 LINE L1 4999 5402 -744 194 0 39 0 chr6 148760780 148760806 -40518748 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 315 217 105 79 chr6 148760951 148761310 -40518244 + L1MEc LINE L1 790 1105 -5100 227 208 69 125 chr6 148761307 148761451 -40518103 - L1MEc LINE L1 -3775 2440 2305 * 353 313 39 8 chr6 148761485 148761590 -40517964 - L1MEc LINE L1 -4093 2303 2192 2177 153 26 0 chr6 148761590 148761942 -40517612 + THE1B LTR MaLR 1 361 -3 353 313 39 8 chr6 148761942 148761964 -40517590 - L1MEc LINE L1 -4204 2192 2172 27 0 0 0 chr6 148762066 148762093 -40517461 + AT_rich Low_complexity Low_complexity 1 27 0 394 383 35 9 chr6 148763519 148763749 -40515805 - LTR16C LTR ERVL 0 491 256 346 319 89 36 chr6 148764158 148764408 -40515146 - ERVL LTR ERVL -327 5341 5094 416 322 105 6 chr6 148764477 148764648 -40514906 - ERVL LTR ERVL -743 5021 4834 2309 179 31 29 chr6 148764662 148765147 -40514407 - MER66B LTR ERV1 0 486 1 958 338 29 41 chr6 148765580 148766096 -40513458 - ERVL LTR ERVL -2286 3368 2860 2117 112 26 3 chr6 148766096 148766400 -40513154 + AluY SINE Alu 1 311 0 958 338 29 41 chr6 148766400 148766548 -40513006 - ERVL LTR ERVL -2794 2860 2712 2311 93 54 25 chr6 148766704 148767058 -40512496 + THE1B LTR MaLR 1 364 0 22 70 0 0 chr6 148767192 148767235 -40512319 + AT_rich Low_complexity Low_complexity 1 43 0 1543 173 50 7 chr6 148767298 148767575 -40511979 + AluJo SINE Alu 1 289 -23 357 24 0 0 chr6 148767579 148767621 -40511933 + (CA)n Simple_repeat Simple_repeat 2 43 0 2387 234 84 52 chr6 148768405 148769347 -40510207 - L1ME3A LINE L1 -8 6162 5195 7361 213 35 50 chr6 148769362 148771490 -40508064 - L1MC4a LINE L1 0 7808 5713 614 232 96 30 chr6 148771495 148771693 -40507861 - L1MC4a LINE L1 -2260 5548 5338 409 91 0 26 chr6 148771890 148771967 -40507587 + AluSp/q SINE Alu 239 313 0 26 30 0 0 chr6 148772061 148772094 -40507460 + AT_rich Low_complexity Low_complexity 1 33 0 1014 213 64 96 chr6 148772105 148772669 -40506885 + L1MC5 LINE L1 6643 7140 -821 1302 222 78 38 chr6 148772703 148773099 -40506455 + L1MCb LINE L1 2 413 -5632 983 118 112 0 chr6 148773094 148773272 -40506282 + L1MC3 LINE L1 7337 7534 -251 * 1417 203 17 23 chr6 148773272 148773573 -40505981 + MLT1A2 LTR MaLR 1 299 -75 2384 141 68 25 chr6 148773576 148774017 -40505537 + LOR1b LTR ERV1 2 461 0 728 168 177 38 chr6 148774043 148774252 -40505302 + L1MC3 LINE L1 7541 7778 -7 722 201 81 103 chr6 148774264 148774472 -40505082 + L1MC5 LINE L1 7135 7333 -628 1739 157 3 52 chr6 148774472 148774797 -40504757 + AluJo SINE Alu 1 309 -3 722 201 81 103 chr6 148774797 148774957 -40504597 + L1MC5 LINE L1 7333 7495 -466 230 313 201 28 chr6 148775028 148775172 -40504382 + LTR67 LTR ERVL 13 181 -376 620 254 62 10 chr6 148775438 148775647 -40503907 + L2 LINE L2 69 288 -3026 223 322 34 17 chr6 148775688 148775806 -40503748 + L2 LINE L2 2991 3110 -203 257 61 0 0 chr6 148775807 148775840 -40503714 + MLT2B2 LTR ERVL 1 33 -482 279 255 0 168 chr6 148775868 148776076 -40503478 + L2 LINE L2 3103 3275 -38 349 250 8 62 chr6 148776079 148776207 -40503347 + LTR67 LTR ERVL 424 544 -13 587 283 108 26 chr6 148777350 148777573 -40501981 - L1ME3A LINE L1 -231 5939 5736 2173 121 32 27 chr6 148777573 148777945 -40501609 - THE1C LTR MaLR -1 374 1 587 283 108 26 chr6 148777945 148778138 -40501416 - L1ME3A LINE L1 -434 5736 5489 1739 144 3 50 chr6 148778302 148778464 -40501090 - AluJo SINE Alu -17 295 152 2411 62 3 10 chr6 148778464 148778769 -40500785 - AluY SINE Alu -8 303 1 1739 144 3 50 chr6 148778769 148778905 -40500649 - AluJo SINE Alu -160 152 11 360 0 0 0 chr6 148779235 148779275 -40500279 + (TG)n Simple_repeat Simple_repeat 2 41 0 205 250 23 0 chr6 148780291 148780335 -40499219 - L3 LINE CR1 -9 1568 1524 547 191 17 17 chr6 148780574 148780689 -40498865 + Charlie1 DNA MER1_type 2647 2761 0 409 204 34 11 chr6 148780740 148780828 -40498726 + MER7A DNA MER2_type 1 88 -258 1313 212 107 22 chr6 148781146 148781509 -40498045 + MSTD LTR MaLR 1 394 -2 310 291 63 34 chr6 148781865 148782040 -40497514 + MIR SINE MIR 83 262 0 241 290 28 19 chr6 148782401 148782508 -40497046 + MLT2E LTR ERVL 38 145 -483 21 57 0 0 chr6 148783563 148783598 -40495956 + AT_rich Low_complexity Low_complexity 1 35 0 261 324 68 0 chr6 148783695 148783769 -40495785 + MIR SINE MIR 38 116 -92 5704 111 11 0 chr6 148783818 148785021 -40494533 - L1PA14 LINE L1 -1 6160 4936 201 337 130 0 chr6 148785232 148785324 -40494230 + L2 LINE L2 3210 3313 0 2363 105 35 22 chr6 148785616 148785986 -40493568 - THE1C LTR MaLR 0 375 1 33 66 0 0 chr6 148786078 148786139 -40493415 + AT_rich Low_complexity Low_complexity 1 61 0 2192 183 26 20 chr6 148786313 148786803 -40492751 - L1MA9 LINE L1 -9 6162 5789 310 125 0 31 chr6 148786832 148786896 -40492658 + (TA)n Simple_repeat Simple_repeat 1 62 0 2795 156 37 11 chr6 148786945 148787539 -40492015 - L1MA9 LINE L1 -517 5795 5188 22 35 0 0 chr6 148788813 148788842 -40490712 + AT_rich Low_complexity Low_complexity 1 29 0 501 250 96 42 chr6 148789412 148789652 -40489902 + MER112 DNA MER1_type 8 260 0 1745 183 86 93 chr6 148790325 148790828 -40488726 - MLT1D LTR MaLR 0 505 7 1094 255 68 20 chr6 148790833 148791174 -40488380 + L1ME1 LINE L1 2672 3042 -3104 1923 185 32 61 chr6 148791174 148791649 -40487905 - MER65C LTR ERV1 0 461 1 1094 255 68 20 chr6 148791649 148791766 -40487788 + L1ME1 LINE L1 3042 3152 -2994 428 207 7 59 chr6 148791932 148792067 -40487487 + L1ME1 LINE L1 4659 4786 -1360 2695 85 14 0 chr6 148792184 148792550 -40487004 + L1PA13 LINE L1 5788 6158 -5 209 108 27 0 chr6 148792629 148792666 -40486888 + (TA)n Simple_repeat Simple_repeat 1 38 0 1248 244 36 5 chr6 148792680 148793066 -40486488 + L1ME1 LINE L1 4836 5233 -913 591 186 71 7 chr6 148793161 148793301 -40486253 - MER53 DNA DNA -40 149 1 1869 247 39 48 chr6 148793303 148794050 -40485504 + L1ME1 LINE L1 5243 6161 -5 1329 188 68 41 chr6 148794182 148794474 -40485080 + AluJo SINE Alu 4 303 -9 2450 284 124 25 chr6 148794561 148795798 -40483756 + L2 LINE L2 1946 3313 0 475 324 107 15 chr6 148795858 148796130 -40483424 + L1M4 LINE L1 2234 2530 -3616 1614 281 21 17 chr6 148796554 148796974 -40482580 - MLT2E LTR ERVL -206 422 1 192 40 0 0 chr6 148797090 148797115 -40482439 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 667 290 91 44 chr6 148797115 148797219 -40482335 + L1M4 LINE L1 4495 4593 -1699 1914 150 134 11 chr6 148797219 148797599 -40481955 - MSTA LTR MaLR -1 427 1 667 290 91 44 chr6 148797599 148798404 -40481150 + L1M4 LINE L1 4593 5447 -845 241 241 0 0 chr6 148798498 148798556 -40480998 + L1M4 LINE L1 5618 5675 -499 2278 105 0 0 chr6 148798747 148799042 -40480512 - AluSg SINE Alu -15 295 1 1966 108 24 3 chr6 148799045 148799332 -40480222 - AluSx SINE Alu -19 293 1 332 179 39 0 chr6 148799422 148799500 -40480054 + L1MA7 LINE L1 6211 6291 0 3171 145 3 3 chr6 148800522 148801089 -40478465 + L1 LINE L1 4493 5059 -1087 1035 253 84 18 chr6 148801099 148801660 -40477894 - L1ME LINE L1 -4747 1793 1165 256 286 98 80 chr6 148801660 148802059 -40477495 + L1M3d LINE L1 1 646 -5485 651 264 31 24 chr6 148802210 148802464 -40477090 + L1M3d LINE L1 916 1171 -4960 * 2165 248 45 51 chr6 148802449 148803210 -40476344 - L1ME LINE L1 -5314 1216 461 196 320 188 8 chr6 148804718 148804846 -40474708 - L2 LINE L2 0 3313 3163 786 328 107 54 chr6 148804976 148805926 -40473628 - L2 LINE L2 -405 2909 1909 363 78 0 0 chr6 148806533 148806584 -40472970 + (CA)n Simple_repeat Simple_repeat 2 52 0 240 35 0 0 chr6 148806631 148806660 -40472894 + (CA)n Simple_repeat Simple_repeat 2 30 0 228 387 63 14 chr6 148806733 148806875 -40472679 + L2 LINE L2 3116 3264 -8 7555 176 33 46 chr6 148807233 148809071 -40470483 + L1MB2 LINE L1 3455 5316 -855 2428 180 45 6 chr6 148809071 148809561 -40469993 + L1MC1 LINE L1 5807 6315 -18 7555 176 33 46 chr6 148809561 148810398 -40469156 + L1MB2 LINE L1 5316 6123 -48 405 39 0 0 chr6 148810398 148810449 -40469105 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 7555 176 33 46 chr6 148810449 148810497 -40469057 + L1MB2 LINE L1 6123 6170 -1 689 259 94 47 chr6 148810587 148810884 -40468670 + L2 LINE L2 3003 3313 0 398 289 119 14 chr6 148811473 148811669 -40467885 + MIR SINE MIR 37 252 -10 22 35 0 0 chr6 148811743 148811772 -40467782 + AT_rich Low_complexity Low_complexity 1 29 0 1629 135 53 89 chr6 148813171 148813607 -40465947 + L1MA9 LINE L1 5870 6289 -23 214 250 44 29 chr6 148813820 148813888 -40465666 + L2 LINE L2 3244 3312 -1 953 253 9 22 chr6 148814015 148814244 -40465310 + MIR SINE MIR 2 227 -35 1706 152 61 30 chr6 148815025 148815386 -40464168 - THE1C LTR MaLR -3 372 1 207 0 0 0 chr6 148816732 148816755 -40462799 + (CA)n Simple_repeat Simple_repeat 2 24 0 274 143 36 0 chr6 148816965 148817021 -40462533 + MER2 DNA MER2_type 146 203 -142 22 56 0 0 chr6 148817021 148817057 -40462497 + AT_rich Low_complexity Low_complexity 1 36 0 2355 82 7 0 chr6 148817466 148817771 -40461783 + AluY SINE Alu 1 307 -4 961 214 130 26 chr6 148818022 148818330 -40461224 - MER2 DNA MER2_type -3 341 2 183 276 0 0 chr6 148818358 148818434 -40461120 + (TA)n Simple_repeat Simple_repeat 2 77 0 775 259 17 9 chr6 148818748 148818980 -40460574 - MLT2F LTR ERVL -429 234 1 311 295 101 14 chr6 148819036 148819175 -40460379 + L1ME4a LINE L1 5083 5233 -913 2106 86 0 7 chr6 148819205 148819483 -40460071 - AluY SINE Alu 0 311 36 1158 219 78 11 chr6 148819542 148819825 -40459729 - AluJo SINE Alu 0 302 1 355 227 90 19 chr6 148820110 148820291 -40459263 + L1ME4a LINE L1 5644 5831 -290 21 0 0 0 chr6 148820315 148820336 -40459218 + AT_rich Low_complexity Low_complexity 1 21 0 202 333 53 26 chr6 148820633 148820747 -40458807 - L2 LINE L2 -189 3083 2967 2413 65 7 3 chr6 148820971 148821281 -40458273 - AluY SINE Alu 0 311 1 2205 90 0 10 chr6 148821825 148822125 -40457429 - AluSc SINE Alu -12 297 1 3422 125 33 4 chr6 148824267 148824779 -40454775 - MER1A DNA MER1_type 0 527 1 180 356 27 0 chr6 148825118 148825191 -40454363 + MIR3 SINE MIR 85 159 -49 768 260 84 73 chr6 148825223 148825767 -40453787 + MER20B DNA MER1_type 43 598 -185 3904 65 13 76 chr6 148825767 148826383 -40453171 + L1PA8 LINE L1 5596 6172 0 768 260 84 73 chr6 148826383 148826565 -40452989 + MER20B DNA MER1_type 598 777 -6 474 309 210 58 chr6 148833184 148833903 -40445651 - L3 LINE CR1 -2 1575 748 253 267 56 0 chr6 148833974 148834064 -40445490 - L3b LINE CR1 -163 1420 1326 208 0 30 30 chr6 148834381 148834414 -40445140 + (AAATG)n Simple_repeat Simple_repeat 3 35 0 28 0 0 0 chr6 148834959 148834987 -40444567 + AT_rich Low_complexity Low_complexity 1 28 0 768 165 8 0 chr6 148834988 148835109 -40444445 - FLAM_C SINE Alu -11 122 1 638 209 58 6 chr6 148835754 148835926 -40443628 + MER53 DNA DNA 6 186 -3 23 33 0 0 chr6 148837418 148837448 -40442106 + AT_rich Low_complexity Low_complexity 1 30 0 410 310 54 8 chr6 148838061 148838190 -40441364 + L2 LINE L2 3133 3267 -5 377 188 12 0 chr6 148839511 148839596 -40439958 + GA-rich Low_complexity Low_complexity 4 89 0 192 297 99 22 chr6 148840030 148840121 -40439433 - L2 LINE L2 -14 3299 3202 591 176 6 75 chr6 148840319 148840478 -40439076 + L1PA16 LINE L1 6016 6163 -3 419 268 71 42 chr6 148840632 148840800 -40438754 - MIR SINE MIR -12 250 78 238 335 73 83 chr6 148841074 148841459 -40438095 - L2 LINE L2 0 3313 2933 403 301 168 43 chr6 148841865 148842257 -40437297 + L2 LINE L2 2429 2869 -445 1570 176 27 18 chr6 148842796 148843125 -40436429 - THE1C LTR MaLR -43 332 1 7692 124 35 7 chr6 148843125 148844350 -40435204 - THE1C-int LTR MaLR 0 1580 322 978 83 0 7 chr6 148844342 148844487 -40435067 - THE1C-int LTR MaLR -1436 144 1 * 1898 158 38 19 chr6 148844487 148844855 -40434699 - THE1C LTR MaLR 0 375 1 265 314 86 0 chr6 148845431 148845571 -40433983 + MER117 DNA MER1_type 7 158 -39 212 344 152 40 chr6 148845949 148846021 -40433533 + L2 LINE L2 3034 3097 -175 360 43 0 0 chr6 148846021 148846067 -40433487 + (TG)n Simple_repeat Simple_repeat 1 46 0 212 344 152 40 chr6 148846067 148846119 -40433435 + L2 LINE L2 3097 3172 -100 3874 184 79 14 chr6 148846131 148847068 -40432486 - L1MA6 LINE L1 -3 6297 5300 2294 207 12 0 chr6 148847085 148847597 -40431957 - L1PA13 LINE L1 -16 6147 5630 274 243 0 0 chr6 148848054 148848124 -40431430 + CT-rich Low_complexity Low_complexity 1 70 0 183 42 0 0 chr6 148850226 148850250 -40429304 + (CCA)n Simple_repeat Simple_repeat 2 25 0 437 193 109 8 chr6 148850468 148850587 -40428967 - MLT1B LTR MaLR -257 133 3 420 325 110 19 chr6 148851436 148851645 -40427909 + MIR SINE MIR 28 255 -7 1501 196 0 0 chr6 148851961 148852221 -40427333 + AluJo SINE Alu 36 295 -17 204 40 0 0 chr6 148852966 148852991 -40426563 + (T)n Simple_repeat Simple_repeat 1 25 0 343 236 28 137 chr6 148853595 148853777 -40425777 - L2 LINE L2 -22 3291 3130 268 345 0 12 chr6 148853758 148853842 -40425712 + MIR SINE MIR 8 90 -172 * 748 257 90 66 chr6 148853876 148854399 -40425155 + MLT1H1 LTR MaLR 24 555 0 522 247 136 6 chr6 148854399 148854561 -40424993 + MIR SINE MIR 77 259 -3 24 0 0 0 chr6 148854563 148854587 -40424967 + AT_rich Low_complexity Low_complexity 1 24 0 541 327 220 11 chr6 148854603 148855054 -40424500 - L2 LINE L2 -241 3072 2527 2009 128 35 0 chr6 148856751 148857039 -40422515 + AluSg SINE Alu 1 298 -12 252 0 0 0 chr6 148858418 148858446 -40421108 + (CA)n Simple_repeat Simple_repeat 2 29 0 303 227 250 15 chr6 148858741 148858873 -40420681 + MIR SINE MIR 90 252 -10 1605 102 5 0 chr6 148858873 148859079 -40420475 - AluSq SINE Alu -106 207 1 405 228 79 9 chr6 148859145 148859259 -40420295 - MER21B LTR ERV1 -54 809 688 415 123 148 0 chr6 148859260 148859341 -40420213 - MER21B LTR ERV1 -326 537 445 1639 219 19 80 chr6 148859381 148859893 -40419661 - MER21B LTR ERV1 -381 482 2 377 313 18 26 chr6 148860879 148861043 -40418511 - MIR SINE MIR -50 212 51 698 224 9 9 chr6 148861118 148861341 -40418213 - HsTC2 DNA Tc2 -66 1832 1610 993 285 59 63 chr6 148861398 148861641 -40417913 - MLT1H LTR MaLR -24 525 283 1914 164 7 0 chr6 148861641 148861939 -40417615 - AluSx SINE Alu -12 300 1 993 285 59 63 chr6 148861939 148862222 -40417332 - MLT1H LTR MaLR -266 283 1 438 241 98 17 chr6 148862250 148862424 -40417130 - HsTC2 DNA Tc2 -271 1627 1264 1028 236 105 24 chr6 148862453 148862537 -40417017 - HsTC2 DNA Tc2 -1296 602 526 1530 213 98 42 chr6 148862537 148863015 -40416539 + MLT1D LTR MaLR 1 505 0 1028 236 105 24 chr6 148863015 148863312 -40416242 - HsTC2 DNA Tc2 -1372 526 190 270 100 12 138 chr6 148863335 148863369 -40416185 - HsTC2 DNA Tc2 -1828 70 50 2161 148 0 0 chr6 148863369 148863673 -40415881 + AluSx SINE Alu 1 304 -8 270 100 12 138 chr6 148863673 148863718 -40415836 - HsTC2 DNA Tc2 -1848 50 1 220 333 77 0 chr6 148863801 148863879 -40415675 - L2 LINE L2 -21 3251 3168 1570 171 11 7 chr6 148864679 148864948 -40414606 - AluJb SINE Alu -30 282 13 5004 147 10 9 chr6 148865055 148865946 -40413608 - Ricksha_a DNA DNA -7 1174 283 534 224 56 0 chr6 148865955 148866098 -40413456 - Ricksha_a DNA DNA -1028 153 3 246 193 104 0 chr6 148866099 148866161 -40413393 + MIR SINE MIR 99 182 -26 260 236 28 0 chr6 148866704 148866776 -40412778 - L1ME LINE L1 -478 5643 5570 769 244 80 72 chr6 148867297 148867757 -40411797 - L1ME4a LINE L1 -192 5929 5466 202 93 0 70 chr6 148869093 148869136 -40410418 + (CATA)n Simple_repeat Simple_repeat 4 43 0 1852 116 77 0 chr6 148869481 148869766 -40409788 - AluSq SINE Alu -6 307 1 1949 135 24 0 chr6 148870735 148871024 -40408530 + AluJb SINE Alu 1 296 -16 22 35 0 0 chr6 148871108 148871137 -40408417 + AT_rich Low_complexity Low_complexity 1 29 0 598 135 27 18 chr6 148871429 148871540 -40408014 + L1MD1 LINE L1 18 129 -6411 5752 189 101 61 chr6 148871582 148872251 -40407303 + L1MD1 LINE L1 575 1216 -5324 2083 134 0 0 chr6 148872251 148872561 -40406993 - AluSx SINE Alu 0 310 1 5752 189 101 61 chr6 148872561 148873254 -40406300 + L1MD1 LINE L1 1216 2032 -4508 2275 105 10 10 chr6 148873254 148873558 -40405996 + AluSx SINE Alu 1 304 -8 5752 189 101 61 chr6 148873558 148874030 -40405524 + L1MD1 LINE L1 2032 2484 -4056 891 175 0 65 chr6 148874030 148874230 -40405324 + AluJo SINE Alu 118 304 -8 3267 233 42 12 chr6 148874230 148875361 -40404193 + L1MD1 LINE L1 2505 3669 -2871 3179 226 49 30 chr6 148875459 148876497 -40403057 + L1MD1 LINE L1 4433 5490 -1050 1734 204 41 3 chr6 148876505 148876849 -40402705 + MLT1A1 LTR MaLR 1 357 -8 2060 179 59 20 chr6 148876850 148876979 -40402575 + L1MD1 LINE L1 5492 5615 -1021 879 193 15 130 chr6 148876979 148877248 -40402306 - MER8 DNA MER2_type -1 238 1 2060 179 59 20 chr6 148877248 148877740 -40401814 + L1MD1 LINE L1 5615 6130 -506 750 136 110 0 chr6 148877856 148878010 -40401544 + L1MD1 LINE L1 6157 6327 -309 448 233 85 8 chr6 148878010 148878139 -40401415 + ERVL LTR ERVL 5009 5147 -617 407 256 0 0 chr6 148878139 148878225 -40401329 + MER82 DNA MER2_type 1 86 -567 235 364 68 15 chr6 148878372 148878504 -40401050 - MIR SINE MIR -122 140 2 439 200 24 80 chr6 148878536 148878661 -40400893 + MER82 DNA MER2_type 444 561 -92 440 211 9 26 chr6 148878672 148878786 -40400768 + MLT2F LTR ERVL 552 663 0 1137 201 26 30 chr6 148878841 148879170 -40400384 + MLT1D LTR MaLR 116 503 -2 1779 129 12 46 chr6 148879789 148880115 -40399439 + MER7A DNA MER2_type 3 315 -31 824 159 13 46 chr6 148880751 148880902 -40398652 + AluJo SINE Alu 1 146 -166 250 331 67 72 chr6 148881187 148881568 -40397986 + L2 LINE L2 2582 3062 -210 2321 104 0 7 chr6 148881982 148882289 -40397265 + AluSx SINE Alu 1 305 -7 550 241 139 62 chr6 148882581 148882797 -40396757 - LTR41 LTR ERVL -308 465 267 1897 133 0 0 chr6 148882797 148883127 -40396427 + AluSx SINE Alu 9 338 0 550 241 139 62 chr6 148883127 148883340 -40396214 - LTR41 LTR ERVL -506 267 1 2221 97 10 0 chr6 148883597 148883887 -40395667 - AluSg SINE Alu -17 293 1 207 272 192 48 chr6 148883887 148884006 -40395548 - MIR SINE MIR -114 148 12 616 279 98 10 chr6 148884276 148884480 -40395074 - MIR SINE MIR -8 254 33 2044 123 20 3 chr6 148884488 148884781 -40394773 - AluSx SINE Alu -14 298 1 22 35 0 0 chr6 148885543 148885572 -40393982 + AT_rich Low_complexity Low_complexity 1 29 0 236 215 169 0 chr6 148886047 148886112 -40393442 + MIR3 SINE MIR 125 200 -8 332 316 219 5 chr6 148886893 148887089 -40392465 + MIR SINE MIR 13 250 -12 265 265 0 12 chr6 148887241 148887324 -40392230 - L1M4 LINE L1 -1985 4161 4080 481 289 85 15 chr6 148887539 148887799 -40391755 - L1ME3A LINE L1 -221 5949 5672 951 276 92 41 chr6 148887893 148888716 -40390838 - L1ME3A LINE L1 -799 5347 4483 2009 116 3 52 chr6 148889031 148889341 -40390213 + AluSx SINE Alu 1 295 -17 1721 153 137 0 chr6 148889525 148889846 -40389708 + MLT1A1 LTR MaLR 1 365 0 869 280 35 51 chr6 148890184 148890698 -40388856 - L1ME3A LINE L1 -1875 4271 3766 2630 216 46 67 chr6 148890720 148891353 -40388201 - L1ME1 LINE L1 -10 6139 5542 2326 67 3 0 chr6 148891353 148891669 -40387885 - AluSp SINE Alu 0 317 1 2630 216 46 67 chr6 148891669 148892333 -40387221 - L1ME1 LINE L1 -607 5542 4865 247 119 0 0 chr6 148892374 148892416 -40387138 + Alu SINE Alu 1 42 -260 29353 96 8 25 chr6 148892416 148898622 -40380932 + L1PA7 LINE L1 269 6461 -8 1280 273 49 17 chr6 148898698 148899225 -40380329 - L1PBa LINE L1 -6314 549 6 572 271 131 66 chr6 148899244 148899287 -40380267 - L1ME1 LINE L1 -4044 2266 2227 2066 145 0 19 chr6 148899287 148899604 -40379950 - AluSx SINE Alu -1 311 1 572 271 131 66 chr6 148899604 148900771 -40378783 - L1ME1 LINE L1 -4083 2227 949 22 70 0 0 chr6 148900836 148900879 -40378675 + AT_rich Low_complexity Low_complexity 1 43 0 2160 111 3 39 chr6 148900881 148901187 -40378367 + AluSx SINE Alu 1 295 -17 285 303 59 59 chr6 148901323 148901660 -40377894 - L1ME1 LINE L1 -5254 865 529 322 313 96 58 chr6 148901698 148902011 -40377543 - L1ME1 LINE L1 -5737 382 58 243 222 16 0 chr6 148902098 148902161 -40377393 - L1P LINE L1 -2739 3407 3344 415 293 121 23 chr6 148902165 148902421 -40377133 - L1MDa LINE L1 -2806 3734 3454 2259 186 13 15 chr6 148902538 148903000 -40376554 + LOR1b LTR ERV1 1 461 0 350 300 11 58 chr6 148903311 148903501 -40376053 - L1MDa LINE L1 -3956 2584 2404 1697 156 0 37 chr6 148903773 148904093 -40375461 - AluJb SINE Alu 0 309 1 2334 112 0 3 chr6 148904106 148904420 -40375134 - AluSq SINE Alu 0 313 1 435 95 111 119 chr6 148904554 148904680 -40374874 + L1MA5A LINE L1 6169 6293 -4 279 0 0 0 chr6 148904935 148904966 -40374588 + (TG)n Simple_repeat Simple_repeat 2 32 0 325 264 75 88 chr6 148905143 148905409 -40374145 - L1M4 LINE L1 -1145 5001 4733 1920 153 28 0 chr6 148905409 148905697 -40373857 - AluJb SINE Alu -16 296 1 325 264 75 88 chr6 148905697 148905723 -40373831 - L1M4 LINE L1 -1413 4733 4708 1678 154 114 0 chr6 148905723 148906003 -40373551 - AluJo SINE Alu 0 312 1 325 264 75 88 chr6 148906003 148906187 -40373367 - L1M4 LINE L1 -1438 4708 4530 1459 123 26 13 chr6 148906193 148906420 -40373134 + MER30 DNA MER1_type 1 230 0 233 297 48 68 chr6 148906447 148906696 -40372858 - MLT1K LTR MaLR -162 426 183 617 160 55 192 chr6 148906701 148907045 -40372509 - LTR41 LTR ERVL -9 764 468 272 297 0 0 chr6 148907102 148907166 -40372388 - LTR41 LTR ERVL -475 298 235 1550 207 35 45 chr6 148907432 148907535 -40372019 + MLT1C LTR MaLR 9 112 -355 1855 161 0 13 chr6 148907535 148907834 -40371720 + AluJb SINE Alu 1 295 -17 1550 207 35 45 chr6 148907834 148908194 -40371360 + MLT1C LTR MaLR 112 467 0 4993 268 58 6 chr6 148908356 148909889 -40369665 - ERVL LTR ERVL -387 5377 3765 499 228 83 120 chr6 148909916 148910192 -40369362 - LTR41 LTR ERVL -507 266 1 252 0 0 0 chr6 148910423 148910451 -40369103 + (CA)n Simple_repeat Simple_repeat 2 29 0 426 259 69 0 chr6 148911780 148911896 -40367658 - MER5C DNA MER1_type -200 124 1 2714 86 25 27 chr6 148911991 148912397 -40367157 + MLT2A2 LTR ERVL 1 405 -48 265 120 80 0 chr6 148912455 148912505 -40367049 + MLT2A2 LTR ERVL 400 453 0 560 123 9 28 chr6 148912721 148912827 -40366727 - L1PB4 LINE L1 -5 6151 6048 355 315 153 15 chr6 148913098 148913393 -40366161 + L2 LINE L2 2713 3050 -222 276 30 0 0 chr6 148913892 148913925 -40365629 + (GCGTG)n Simple_repeat Simple_repeat 3 35 0 296 226 107 71 chr6 148914423 148914591 -40364963 + Charlie2a DNA MER1_type 1473 1646 -1216 373 234 186 48 chr6 148915193 148915360 -40364194 - L1M2 LINE L1 -5902 947 758 595 256 73 37 chr6 148919404 148919595 -40359959 + MIR SINE MIR 20 217 -45 24 0 0 0 chr6 148920530 148920554 -40359000 + AT_rich Low_complexity Low_complexity 1 24 0 1922 152 0 23 chr6 148920806 148921109 -40358445 - AluSx SINE Alu -16 296 1 198 0 0 0 chr6 148921227 148921249 -40358305 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 2164 119 0 3 chr6 148921252 148921545 -40358009 - AluSx SINE Alu -20 292 1 26 0 0 0 chr6 148922181 148922207 -40357347 + AT_rich Low_complexity Low_complexity 1 26 0 477 294 92 62 chr6 148923120 148923220 -40356334 + L2 LINE L2 2929 3024 -289 2194 124 10 0 chr6 148923220 148923526 -40356028 - AluSg SINE Alu -1 309 1 477 294 92 62 chr6 148923526 148923782 -40355772 + L2 LINE L2 3024 3296 -17 198 376 20 10 chr6 148924037 148924138 -40355416 - L2 LINE L2 -611 2703 2602 296 269 164 10 chr6 148925046 148925150 -40354404 + MER5B DNA MER1_type 1 120 -58 1805 166 16 7 chr6 148925177 148925484 -40354070 - AluJb SINE Alu -2 310 1 2252 63 0 36 chr6 148925511 148925814 -40353740 + AluY SINE Alu 1 292 -19 218 269 144 31 chr6 148925856 148926016 -40353538 - L3b LINE CR1 -304 1279 1102 203 0 37 0 chr6 148926176 148926203 -40353351 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2390 63 7 10 chr6 148926209 148926510 -40353044 - AluY SINE Alu -11 300 1 808 205 102 15 chr6 148927603 148927808 -40351746 - MIR SINE MIR 0 262 40 212 143 0 0 chr6 148927825 148927860 -40351694 + (GA)n Simple_repeat Simple_repeat 2 36 0 209 81 0 27 chr6 148927860 148927897 -40351657 + (TG)n Simple_repeat Simple_repeat 2 37 0 185 358 83 8 chr6 148927951 148928071 -40351483 - L2 LINE L2 -20 3293 3165 966 287 135 62 chr6 148928193 148928921 -40350633 + L2 LINE L2 2175 2955 -359 1395 188 145 0 chr6 148929224 148929527 -40350027 - MER7A DNA MER2_type -1 345 1 1587 97 97 9 chr6 148929769 148929997 -40349557 - AluSc SINE Alu -9 300 53 203 301 145 42 chr6 148930226 148930392 -40349162 - MIR SINE MIR -1 261 79 1762 150 44 0 chr6 148930429 148930723 -40348831 - AluSx SINE Alu -5 307 1 207 0 0 0 chr6 148931014 148931037 -40348517 + (T)n Simple_repeat Simple_repeat 1 23 0 222 344 16 72 chr6 148931696 148931821 -40347733 - L3 LINE CR1 -2 1575 1458 1239 184 36 0 chr6 148932359 148932582 -40346972 - AluJo SINE Alu 0 312 82 4727 149 72 17 chr6 148932582 148933342 -40346212 - L1MA6 LINE L1 -1 6299 5460 225 0 0 0 chr6 148933342 148933367 -40346187 + (TTG)n Simple_repeat Simple_repeat 2 26 0 4727 149 72 17 chr6 148933367 148933706 -40345848 - L1MA6 LINE L1 -840 5460 5141 333 250 103 56 chr6 148933904 148934136 -40345418 - L1MC4 LINE L1 -150 7892 7650 215 174 22 0 chr6 148934165 148934211 -40345343 - L3 LINE CR1 -742 835 789 770 185 185 0 chr6 148934231 148934420 -40345134 - MER58A DNA MER1_type 0 224 1 264 30 0 0 chr6 148934441 148934474 -40345080 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 553 237 111 35 chr6 148934559 148934757 -40344797 - MIR SINE MIR 0 262 50 222 367 101 0 chr6 148934829 148934968 -40344586 - L3 LINE CR1 -1083 494 342 25 31 0 0 chr6 148935719 148935751 -40343803 + AT_rich Low_complexity Low_complexity 1 32 0 343 300 185 32 chr6 148935767 148936080 -40343474 - L1ME4a LINE L1 -69 6052 5692 2230 88 18 0 chr6 148936104 148936387 -40343167 - AluSg SINE Alu -20 290 3 587 278 177 34 chr6 148936596 148937160 -40342394 + L1M4 LINE L1 2845 3489 -2657 279 277 110 0 chr6 148937276 148937431 -40342123 + L1M4 LINE L1 3599 3770 -2376 275 328 90 16 chr6 148938062 148938184 -40341370 - L2 LINE L2 -3 3310 3180 1959 115 66 0 chr6 148938470 148938758 -40340796 + AluSg1 SINE Alu 1 307 -2 1018 249 71 75 chr6 148939412 148939917 -40339637 - MLT1J LTR MaLR 0 511 9 572 247 102 16 chr6 148940024 148940210 -40339344 - MIR SINE MIR 0 262 61 187 261 0 87 chr6 148940920 148940989 -40338565 + L2 LINE L2 3197 3259 -54 2162 120 7 0 chr6 148941417 148941709 -40337845 - AluSx SINE Alu -18 294 1 285 240 130 20 chr6 148942090 148942190 -40337364 - L2 LINE L2 0 3313 3203 35 0 0 0 chr6 148942360 148942395 -40337159 + AT_rich Low_complexity Low_complexity 1 35 0 2379 97 0 16 chr6 148942725 148943033 -40336521 - AluSc SINE Alu -6 303 1 270 265 327 6 chr6 148943617 148943779 -40335775 + L2 LINE L2 2132 2345 -969 616 294 100 34 chr6 148943781 148944050 -40335504 - L2 LINE L2 -164 3149 2863 523 174 87 60 chr6 148946517 148946735 -40332819 - L1ME3A LINE L1 -152 6018 5795 2249 104 3 3 chr6 148946761 148947060 -40332494 + AluSc SINE Alu 1 299 -10 405 58 0 0 chr6 148947060 148947112 -40332442 + (TA)n Simple_repeat Simple_repeat 2 53 0 225 0 0 0 chr6 148949387 148949412 -40330142 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr6 148950949 148950972 -40328582 + AT_rich Low_complexity Low_complexity 1 23 0 360 246 131 15 chr6 148953439 148953569 -40325985 + L2 LINE L2 1613 1757 -1557 185 261 175 47 chr6 148953622 148953833 -40325721 - L2 LINE L2 -86 3227 2990 257 257 108 34 chr6 148953865 148954013 -40325541 - L2 LINE L2 -1553 1761 1603 1465 258 151 19 chr6 148954024 148954645 -40324909 - L2 LINE L2 -1819 1495 793 315 309 73 0 chr6 148954640 148954776 -40324778 + L2 LINE L2 1741 1886 -1428 * 911 252 129 27 chr6 148954811 148955252 -40324302 + L2 LINE L2 2018 2503 -811 3588 265 158 25 chr6 148955261 148956208 -40323346 - L2 LINE L2 -1 3312 2492 2372 61 27 3 chr6 148956208 148956504 -40323050 + AluY SINE Alu 1 303 -8 3588 265 158 25 chr6 148956504 148957453 -40322101 - L2 LINE L2 -821 2492 1150 642 281 145 8 chr6 148957467 148957795 -40321759 + L2 LINE L2 2699 3072 -241 295 196 0 0 chr6 148957869 148957920 -40321634 + MIR SINE MIR 206 256 -6 206 154 0 26 chr6 148957920 148957959 -40321595 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 1792 79 0 68 chr6 148958763 148959029 -40320525 + AluY SINE Alu 42 289 -22 3733 137 13 0 chr6 148959035 148959581 -40319973 + L1PA16 LINE L1 5611 6163 -3 1870 147 7 3 chr6 148960318 148960603 -40318951 - AluJb SINE Alu -26 286 1 758 236 130 63 chr6 148961152 148961597 -40317957 + MLT1H LTR MaLR 72 546 -3 1112 112 18 18 chr6 148962904 148963074 -40316480 + L1PB1 LINE L1 5978 6147 -4 635 254 86 53 chr6 148963122 148963519 -40316035 - MER97c DNA MER1_type? -56 1034 625 1216 309 140 16 chr6 148965161 148965796 -40313758 - L3 LINE CR1 -96 1481 768 201 203 0 62 chr6 148965852 148965916 -40313638 - L3 LINE CR1 -820 757 698 240 214 0 0 chr6 148966197 148966253 -40313301 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 308 177 152 25 chr6 148966311 148966390 -40313164 - L1MC5 LINE L1 -502 7459 7371 931 227 117 47 chr6 148966418 148966761 -40312793 + L1MC5 LINE L1 6968 7334 -627 21 0 0 75 chr6 148966764 148966804 -40312750 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 148966923 148966946 -40312608 + AT_rich Low_complexity Low_complexity 1 23 0 2342 103 0 10 chr6 148967140 148967452 -40312102 + AluSg SINE Alu 2 310 0 740 227 119 99 chr6 148967593 148967651 -40311903 + L1MC5 LINE L1 7324 7379 -582 2043 130 6 25 chr6 148967651 148967966 -40311588 + AluSx SINE Alu 1 309 -3 740 227 119 99 chr6 148967966 148968485 -40311069 + L1MC5 LINE L1 7379 7913 -48 612 263 73 6 chr6 148969539 148969718 -40309836 - MIR SINE MIR -70 192 2 26 0 0 0 chr6 148969728 148969754 -40309800 + AT_rich Low_complexity Low_complexity 1 26 0 1500 156 70 0 chr6 148971323 148971423 -40308131 + AluJo SINE Alu 21 113 -199 332 0 0 44 chr6 148971423 148971468 -40308086 + (TAAAA)n Simple_repeat Simple_repeat 1 43 0 1500 156 70 0 chr6 148971468 148971610 -40307944 + AluJo SINE Alu 113 280 -32 1391 146 0 5 chr6 148973107 148973306 -40306248 + AluJ SINE Alu 1 198 -114 667 147 0 0 chr6 148973423 148973525 -40306029 + AluJ SINE Alu 207 308 -4 1824 142 4 4 chr6 148973527 148973802 -40305752 + AluSx SINE Alu 1 275 -37 194 0 39 0 chr6 148973812 148973838 -40305716 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1125 184 116 85 chr6 148974205 148974454 -40305100 - Charlie2 DNA MER1_type 0 2862 2593 1588 174 3 24 chr6 148974454 148974742 -40304812 + AluJo SINE Alu 1 282 -30 1125 184 116 85 chr6 148974742 148974905 -40304649 - Charlie2 DNA MER1_type -269 2593 2437 908 160 28 0 chr6 148974912 148975083 -40304471 + AluSp SINE Alu 137 311 0 773 215 122 19 chr6 148975088 148975575 -40303979 - Charlie2 DNA MER1_type -418 2444 1867 434 303 155 21 chr6 148975586 148975832 -40303722 - Charlie2 DNA MER1_type -2540 322 32 1840 130 67 48 chr6 148975832 148976162 -40303392 - MER1B DNA MER1_type 0 337 2 434 303 155 21 chr6 148976162 148976199 -40303355 - Charlie2 DNA MER1_type -2830 32 1 1517 78 34 10 chr6 148977043 148977248 -40302306 + L1PA11 LINE L1 5961 6170 -4 22 0 0 0 chr6 148977248 148977270 -40302284 + AT_rich Low_complexity Low_complexity 1 22 0 1632 183 43 116 chr6 148977819 148978051 -40301503 + LTR40a LTR ERVL 2 179 -340 234 0 0 0 chr6 148978051 148978077 -40301477 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1632 183 43 116 chr6 148978077 148978353 -40301201 + LTR40a LTR ERVL 179 473 -46 794 203 13 13 chr6 148978349 148978507 -40301047 + LTR40b LTR ERVL 305 462 0 * 1037 274 30 157 chr6 148978626 148979070 -40300484 - L2 LINE L2 -386 2928 2681 2006 128 3 3 chr6 148979070 148979394 -40300160 + AluSx SINE Alu 1 324 0 1037 274 30 157 chr6 148979394 148979952 -40299602 - L2 LINE L2 -633 2681 2053 22 0 0 0 chr6 148980365 148980387 -40299167 + AT_rich Low_complexity Low_complexity 1 22 0 503 70 61 0 chr6 148980677 148980792 -40298762 + (TA)n Simple_repeat Simple_repeat 1 122 0 466 328 8 66 chr6 148980879 148981123 -40298431 - L2 LINE L2 -337 2977 2748 191 205 0 26 chr6 148981809 148981848 -40297706 - L3 LINE CR1 -443 1134 1097 2696 153 127 73 chr6 148982846 148983517 -40296037 + MER39 LTR ERV1 1 707 0 260 314 88 0 chr6 148984305 148984407 -40295147 + L2 LINE L2 3180 3290 -23 186 43 0 0 chr6 148984414 148984437 -40295117 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 384 152 15 15 chr6 148984760 148984826 -40294728 + LTR40a LTR ERVL 454 519 0 361 241 23 11 chr6 148985510 148985597 -40293957 - L2 LINE L2 -1 3271 3184 2493 48 0 19 chr6 148985661 148985970 -40293584 + AluY SINE Alu 1 303 -8 390 338 108 9 chr6 148986321 148986534 -40293020 - MIR SINE MIR -2 260 27 473 307 72 15 chr6 148986535 148986799 -40292755 + L2 LINE L2 2868 3146 -167 206 319 0 0 chr6 148986896 148986968 -40292586 + L2 LINE L2 3242 3313 0 198 209 0 23 chr6 148987142 148987185 -40292369 + MIR SINE MIR 58 99 -109 21 0 0 0 chr6 148987287 148987308 -40292246 + AT_rich Low_complexity Low_complexity 1 21 0 444 294 45 23 chr6 148988997 148989174 -40290380 - MIR SINE MIR -50 212 32 234 218 18 18 chr6 148989606 148989661 -40289893 + MIR SINE MIR 16 70 -138 2241 92 0 0 chr6 148989707 148990024 -40289530 + AluSq SINE Alu 13 329 0 341 216 23 11 chr6 148990161 148990249 -40289305 + MER65A LTR ERV1 1 89 -356 855 295 105 32 chr6 148991298 148991830 -40287724 + MLT2F LTR ERVL 1 571 -92 386 307 15 15 chr6 148991840 148991977 -40287577 + MLT2E LTR ERVL 472 608 -20 440 217 43 9 chr6 148992239 148992354 -40287200 + MLT1J LTR MaLR 384 502 -9 494 224 48 48 chr6 148992729 148992894 -40286660 + MIR SINE MIR 91 255 -7 1952 135 40 3 chr6 148992976 148993273 -40286281 - AluSx SINE Alu -4 308 1 226 115 39 0 chr6 148993864 148993916 -40285638 + A-rich Low_complexity Low_complexity 4 57 0 329 336 8 55 chr6 148994527 148994655 -40284899 + L2 LINE L2 3147 3268 -4 282 217 14 14 chr6 148994879 148994948 -40284606 + GA-rich Low_complexity Low_complexity 1 69 0 952 101 0 0 chr6 148998374 148998503 -40281051 - AluSg/x SINE Alu -7 303 175 208 296 92 102 chr6 148998503 148998571 -40280983 + L2 LINE L2 2995 3062 -210 2157 96 26 10 chr6 148998571 148998874 -40280680 - AluSc SINE Alu -1 308 1 208 296 92 102 chr6 148998874 148999001 -40280553 + L2 LINE L2 3062 3188 -84 2149 121 7 3 chr6 148999578 148999885 -40279669 - AluSx SINE Alu -4 308 1 223 155 0 35 chr6 148999885 148999925 -40279629 + CT-rich Low_complexity Low_complexity 3 42 -16 2300 102 13 0 chr6 148999925 149000229 -40279325 - AluSx SINE Alu -4 308 1 223 155 0 35 chr6 149000229 149000246 -40279308 + CT-rich Low_complexity Low_complexity 42 58 0 2226 147 40 91 chr6 149000883 149001290 -40278264 + MSTB LTR MaLR 1 384 -42 2317 112 0 6 chr6 149001290 149001604 -40277950 - AluJb SINE Alu 0 312 1 2226 147 40 91 chr6 149001604 149001645 -40277909 + MSTB LTR MaLR 384 426 0 517 264 27 70 chr6 149001741 149001999 -40277555 - MLT1L LTR MaLR -151 464 218 804 239 24 0 chr6 149002567 149002734 -40276820 + FRAM SINE Alu 5 175 -1 195 139 0 0 chr6 149003708 149003744 -40275810 + (GA)n Simple_repeat Simple_repeat 1 36 0 1864 159 0 7 chr6 149003907 149004215 -40275339 + AluJo SINE Alu 1 306 0 22 0 0 0 chr6 149004594 149004616 -40274938 + AT_rich Low_complexity Low_complexity 1 22 0 2283 105 3 0 chr6 149004727 149005032 -40274522 + AluSc SINE Alu 1 306 -3 2472 78 0 7 chr6 149005644 149005953 -40273601 + AluSq SINE Alu 1 307 -6 236 278 0 0 chr6 149005986 149006040 -40273514 + L2 LINE L2 3251 3304 -9 261 360 18 9 chr6 149006526 149006640 -40272914 + MIR3 SINE MIR 1 115 -93 404 295 139 0 chr6 149006697 149006863 -40272691 + MIR SINE MIR 74 262 0 298 220 184 7 chr6 149006862 149006974 -40272580 + MIR SINE MIR 113 248 -14 * 1723 121 35 46 chr6 149007737 149008019 -40271535 + AluSx SINE Alu 5 283 -29 1730 141 99 0 chr6 149009530 149009814 -40269740 + AluSx SINE Alu 1 312 0 201 264 69 0 chr6 149010675 149010747 -40268807 + MIR SINE MIR 63 139 -69 198 0 0 0 chr6 149012137 149012159 -40267395 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1731 136 47 39 chr6 149012162 149012441 -40267113 - AluSx SINE Alu -31 281 1 474 18 0 0 chr6 149013463 149013518 -40266036 + (CA)n Simple_repeat Simple_repeat 1 55 0 513 219 222 17 chr6 149014804 149015019 -40264535 - MIR SINE MIR 0 262 11 411 347 99 0 chr6 149016154 149016275 -40263279 + L2 LINE L2 3134 3266 -6 550 217 50 8 chr6 149016311 149016431 -40263123 + L2 LINE L2 3189 3313 0 259 256 122 11 chr6 149016852 149016942 -40262612 - MIR SINE MIR -77 185 86 1395 197 39 13 chr6 149017163 149017473 -40262081 - L1ME2 LINE L1 -173 5991 5674 22 0 0 0 chr6 149018171 149018193 -40261361 + AT_rich Low_complexity Low_complexity 1 22 0 598 247 43 27 chr6 149018214 149018400 -40261154 + MER91B DNA MER1_type 2 190 0 284 336 70 0 chr6 149019048 149019191 -40260363 + LTR67 LTR ERVL 151 303 -254 232 229 0 0 chr6 149019275 149019323 -40260231 + LTR67 LTR ERVL 509 556 -1 1442 245 57 75 chr6 149019357 149019629 -40259925 + MER69 DNA AcHobo 1 261 -965 2211 119 0 26 chr6 149019629 149019941 -40259613 - AluSx SINE Alu -8 304 1 1442 245 57 75 chr6 149019941 149020162 -40259392 + MER69 DNA AcHobo 261 485 -741 1005 204 169 31 chr6 149020177 149020378 -40259176 + MER69 DNA AcHobo 2163 2335 -191 1588 157 10 77 chr6 149020378 149020678 -40258876 + AluJb SINE Alu 2 281 -31 1005 204 169 31 chr6 149020678 149020720 -40258834 + MER69 DNA AcHobo 2335 2370 -156 2323 85 20 0 chr6 149020720 149021014 -40258540 - AluY SINE Alu -11 300 1 1005 204 169 31 chr6 149021014 149021088 -40258466 + MER69 DNA AcHobo 2370 2525 -1 417 301 42 30 chr6 149021150 149021316 -40258238 + L2 LINE L2 2545 2712 -602 2128 120 7 23 chr6 149022568 149022877 -40256677 - AluSq SINE Alu -9 304 1 286 350 49 0 chr6 149023100 149023223 -40256331 + L2 LINE L2 3180 3308 -5 693 236 102 18 chr6 149023314 149023525 -40256029 + MIR SINE MIR 46 259 -3 2168 134 0 3 chr6 149023583 149023888 -40255666 + AluJb SINE Alu 5 308 -4 274 341 87 7 chr6 149023892 149024030 -40255524 + MIR SINE MIR 20 168 -94 358 259 7 102 chr6 149076404 149076551 -40203003 - L3b LINE CR1 -84 1499 1367 1543 169 26 13 chr6 149077026 149077333 -40202221 + AluJb SINE Alu 1 311 -1 883 280 141 87 chr6 149077428 149078235 -40201319 - L3 LINE CR1 -2 1575 725 1982 131 0 0 chr6 149078250 149078558 -40200996 - AluSx SINE Alu 0 308 1 191 36 36 0 chr6 149078600 149078628 -40200926 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2026 132 0 0 chr6 149078712 149079015 -40200539 + AluSx SINE Alu 1 303 -9 521 255 229 31 chr6 149079047 149079265 -40200289 - L2 LINE L2 0 3313 3139 2594 89 23 0 chr6 149079265 149079612 -40199942 + THE1A LTR MaLR 1 355 0 12086 94 2 2 chr6 149079612 149081193 -40198361 + THE1A-int LTR MaLR 1 1580 0 2826 79 3 0 chr6 149081193 149081547 -40198007 + THE1A LTR MaLR 1 355 0 521 255 229 31 chr6 149081547 149081675 -40197879 - L2 LINE L2 -173 3140 2896 2309 88 0 3 chr6 149082421 149082726 -40196828 + AluSx SINE Alu 1 304 -8 255 298 85 11 chr6 149082959 149083053 -40196501 + MIR SINE MIR 28 128 -134 2659 23 0 0 chr6 149083148 149083455 -40196099 - AluYb8 SINE Alu -11 307 1 233 309 18 64 chr6 149083682 149083792 -40195762 + MIR3 SINE MIR 9 113 -95 1818 152 10 3 chr6 149083792 149084101 -40195453 + AluJb SINE Alu 1 311 -1 189 0 0 0 chr6 149084260 149084281 -40195273 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1715 184 0 7 chr6 149084740 149085044 -40194510 + AluJb SINE Alu 1 302 -10 400 354 39 8 chr6 149085203 149085333 -40194221 + L2 LINE L2 3137 3270 -2 245 146 0 109 chr6 149085855 149085910 -40193644 - MIR SINE MIR -71 191 143 2358 71 0 0 chr6 149086098 149086392 -40193162 + AluSg SINE Alu 2 295 -15 181 322 109 60 chr6 149086502 149086685 -40192869 + MIR SINE MIR 20 211 -51 219 69 0 0 chr6 149086698 149086727 -40192827 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1395 136 18 4 chr6 149086733 149086961 -40192593 - AluJb SINE Alu -81 231 1 428 182 0 0 chr6 149087001 149087067 -40192487 - MER2 DNA MER2_type 0 345 280 1601 120 12 126 chr6 149087073 149087414 -40192140 + AluSq SINE Alu 1 302 -1 738 62 0 0 chr6 149087417 149087513 -40192041 + (GGAA)n Simple_repeat Simple_repeat 4 99 0 1160 44 0 0 chr6 149087613 149087749 -40191805 - AluSg SINE Alu -174 136 1 503 202 10 20 chr6 149087749 149087848 -40191706 - MER2 DNA MER2_type -247 98 1 2261 40 0 119 chr6 149087937 149088289 -40191265 + AluY SINE Alu 1 310 -1 200 73 18 55 chr6 149089712 149089767 -40189787 + (TTG)n Simple_repeat Simple_repeat 2 54 0 21 36 0 0 chr6 149090190 149090218 -40189336 + AT_rich Low_complexity Low_complexity 1 28 0 210 148 16 66 chr6 149090266 149090327 -40189227 + T-rich Low_complexity Low_complexity 1 58 0 1916 124 28 0 chr6 149090691 149090981 -40188573 + AluSx SINE Alu 1 298 -14 1516 181 33 10 chr6 149091381 149091680 -40187874 + AluJb SINE Alu 1 306 -6 250 219 0 0 chr6 149091834 149091875 -40187679 + MER66A LTR ERV1 296 336 -142 345 73 0 0 chr6 149092086 149092141 -40187413 - L1PA16 LINE L1 0 6166 6112 373 64 0 0 chr6 149092248 149092352 -40187202 - AluSp/q SINE Alu 0 303 250 942 104 0 0 chr6 149092916 149093041 -40186513 + AluSq/x SINE Alu 1 125 -188 1569 250 129 32 chr6 149093374 149093995 -40185559 - L1ME3A LINE L1 -8 6162 5482 213 94 0 0 chr6 149094010 149094042 -40185512 + (TCTCCC)n Simple_repeat Simple_repeat 4 35 0 410 292 186 58 chr6 149094160 149094329 -40185225 + MIR SINE MIR 6 213 -49 902 205 242 8 chr6 149094329 149094573 -40184981 + AluJb SINE Alu 2 302 0 410 292 186 58 chr6 149094573 149094629 -40184925 + MIR SINE MIR 213 260 -2 192 304 0 0 chr6 149094809 149094855 -40184699 + L2 LINE L2 3136 3181 -91 2517 40 0 3 chr6 149095555 149095858 -40183696 - AluY SINE Alu -9 302 1 1835 133 4 0 chr6 149096610 149096888 -40182666 + AluSx SINE Alu 30 308 -4 315 297 162 0 chr6 149096968 149097079 -40182475 + L2 LINE L2 3181 3309 -4 210 37 0 0 chr6 149099529 149099556 -40179998 + (TG)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr6 149103848 149103869 -40175685 + GC_rich Low_complexity Low_complexity 1 21 0 223 253 0 53 chr6 149104055 149104130 -40175424 + G-rich Low_complexity Low_complexity 5 75 0 2633 49 0 0 chr6 149105115 149105424 -40174130 + AluSc SINE Alu 1 306 -3 21 36 0 0 chr6 149107307 149107335 -40172219 + AT_rich Low_complexity Low_complexity 1 28 0 1933 181 0 0 chr6 149108126 149108430 -40171124 - AluJb SINE Alu -3 309 6 1990 145 7 3 chr6 149108772 149109069 -40170485 + AluJo SINE Alu 1 298 -14 2215 130 0 9 chr6 149109511 149109826 -40169728 - AluSx SINE Alu 0 312 1 185 0 40 0 chr6 149110033 149110058 -40169496 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 2096 133 0 0 chr6 149110060 149110339 -40169215 - AluSx SINE Alu -33 279 1 230 293 111 0 chr6 149110340 149110439 -40169115 + MIR SINE MIR 78 187 -75 733 130 4 2 chr6 149110447 149110702 -40168852 + AluSx SINE Alu 1 305 -5 1428 157 15 0 chr6 149111349 149111616 -40167938 - L1MA4 LINE L1 -3 6297 6027 558 319 91 41 chr6 149112178 149112398 -40167156 + L2 LINE L2 2809 3017 -296 2284 89 0 29 chr6 149112398 149112711 -40166843 + AluSc SINE Alu 1 304 -5 558 319 91 41 chr6 149112711 149112872 -40166682 + L2 LINE L2 3017 3219 -94 1688 187 0 3 chr6 149112872 149113166 -40166388 - AluJb SINE Alu -19 293 1 558 319 91 41 chr6 149113166 149113247 -40166307 + L2 LINE L2 3219 3295 -18 306 0 0 0 chr6 149113737 149113771 -40165783 + (TG)n Simple_repeat Simple_repeat 2 35 0 247 171 0 0 chr6 149113810 149113851 -40165703 + GA-rich Low_complexity Low_complexity 3 43 0 1919 182 143 45 chr6 149113851 149114313 -40165241 - MLT2D LTR ERVL -46 507 1 * 2051 225 48 44 chr6 149113916 149114306 -40165248 - Ricksha DNA DNA -1314 732 341 13024 130 18 35 chr6 149114306 149114994 -40164560 - ERVL-D LTR ERVL 0 5764 5066 2158 119 3 0 chr6 149114994 149115296 -40164258 - AluSx SINE Alu -8 304 2 13024 130 18 35 chr6 149115296 149116682 -40162872 - ERVL-D LTR ERVL -698 5066 3724 1797 138 3 44 chr6 149116922 149117220 -40162334 - AluJb SINE Alu -20 292 7 330 87 0 0 chr6 149117386 149117432 -40162122 + (TG)n Simple_repeat Simple_repeat 2 47 0 2455 92 0 6 chr6 149118018 149118332 -40161222 - AluSx SINE Alu 0 312 1 2199 126 0 0 chr6 149118470 149118763 -40160791 - AluSx SINE Alu -14 298 6 191 254 0 34 chr6 149119774 149119833 -40159721 - MIR SINE MIR -1 261 205 2380 83 3 16 chr6 149119842 149120018 -40159536 - AluSx SINE Alu -3 309 137 2311 78 14 0 chr6 149120018 149120311 -40159243 - AluSc SINE Alu -12 297 1 2380 83 3 16 chr6 149120311 149120447 -40159107 - AluSx SINE Alu -175 137 1 1691 102 47 0 chr6 149120801 149121037 -40158517 - AluSx SINE Alu -61 251 5 1073 170 0 0 chr6 149121428 149121628 -40157926 - MER6 DNA MER2_type -3 862 663 297 136 51 68 chr6 149121625 149121684 -40157870 - FRAM/FAM SINE Alu -97 78 21 * 280 157 78 0 chr6 149121888 149121939 -40157615 + MER66A LTR ERV1 283 337 -141 208 222 0 0 chr6 149121942 149121978 -40157576 + polypurine Low_complexity Low_complexity 3 38 0 2082 118 0 0 chr6 149123025 149123339 -40156215 - AluSg SINE Alu 0 314 1 1045 202 0 43 chr6 149123398 149123631 -40155923 + AluJb SINE Alu 86 308 -4 824 215 5 11 chr6 149124328 149124514 -40155040 + AluSq SINE Alu 110 294 -19 1528 136 120 12 chr6 149124616 149124874 -40154680 + AluSg SINE Alu 1 286 -24 1089 211 136 101 chr6 149125275 149125454 -40154100 + L1MC4 LINE L1 6450 6621 -1421 2137 108 0 7 chr6 149125454 149125740 -40153814 + AluSg SINE Alu 1 284 -26 1089 211 136 101 chr6 149125740 149126087 -40153467 + L1MC4 LINE L1 6621 7002 -1040 2160 96 41 3 chr6 149126087 149126380 -40153174 + AluSg SINE Alu 1 304 -6 1089 211 136 101 chr6 149126380 149126454 -40153100 + L1MC4 LINE L1 7002 7072 -970 2028 210 47 93 chr6 149126474 149126745 -40152809 + L1MC4 LINE L1 7238 7520 -522 2258 95 40 0 chr6 149126745 149127041 -40152513 + AluSg SINE Alu 1 308 -2 2028 210 47 93 chr6 149127041 149127268 -40152286 + L1MC4 LINE L1 7520 7756 -286 2483 75 0 0 chr6 149127268 149127562 -40151992 + AluSc SINE Alu 1 294 -15 2028 210 47 93 chr6 149127562 149127812 -40151742 + L1MC4 LINE L1 7756 8036 -6 542 253 129 30 chr6 149128301 149128537 -40151017 + MIR SINE MIR 3 262 0 314 301 111 13 chr6 149128558 149128711 -40150843 + L1ME LINE L1 5604 5771 -350 665 237 98 84 chr6 149128753 149128921 -40150633 + MLT1A2 LTR MaLR 3 167 -207 2332 99 3 37 chr6 149128921 149129243 -40150311 + AluSx SINE Alu 1 311 -1 665 237 98 84 chr6 149129243 149129441 -40150113 + MLT1A2 LTR MaLR 167 374 0 1165 68 0 0 chr6 149129665 149129798 -40149756 - AluSq/x SINE Alu -180 133 1 1804 253 72 47 chr6 149130170 149130498 -40149056 + L1MEc LINE L1 1402 1720 -4495 2195 113 9 28 chr6 149130498 149130816 -40148738 + AluSx SINE Alu 1 312 0 1804 253 72 47 chr6 149130816 149131098 -40148456 + L1MEc LINE L1 1720 1993 -4222 2177 128 3 0 chr6 149131098 149131402 -40148152 + AluSx SINE Alu 1 305 -7 1804 253 72 47 chr6 149131402 149131918 -40147636 + L1MEc LINE L1 1993 2525 -3690 2282 105 0 16 chr6 149131918 149132222 -40147332 + AluSp SINE Alu 1 299 -14 1804 253 72 47 chr6 149132222 149132358 -40147196 + L1MEc LINE L1 2525 2656 -3559 378 0 0 0 chr6 149132358 149132400 -40147154 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 491 108 12 36 chr6 149132541 149132624 -40146930 + AluJ/FRAM SINE Alu 224 304 -8 2198 124 0 0 chr6 149132686 149132984 -40146570 - AluSq SINE Alu -15 298 1 513 342 26 23 chr6 149133674 149133873 -40145681 + L3 LINE CR1 1129 1331 -246 2526 57 0 22 chr6 149133873 149134189 -40145365 + AluY SINE Alu 3 311 0 513 342 26 23 chr6 149134189 149134255 -40145299 + L3 LINE CR1 1331 1395 -182 853 77 0 8 chr6 149134326 149134443 -40145111 - AluSc SINE Alu -3 306 191 206 154 0 26 chr6 149134507 149134546 -40145008 + T-rich Low_complexity Low_complexity 2 39 0 2968 124 15 52 chr6 149135044 149135089 -40144465 - L1MB1 LINE L1 -3 6165 6120 2362 82 10 0 chr6 149135089 149135383 -40144171 - AluSx SINE Alu -15 297 1 2252 89 41 0 chr6 149135392 149135683 -40143871 - AluSg SINE Alu -7 303 1 2968 124 15 52 chr6 149135683 149136151 -40143403 - L1MB1 LINE L1 -56 6112 5661 2231 120 0 0 chr6 149136250 149136549 -40143005 + AluSx SINE Alu 1 299 -13 2259 92 0 0 chr6 149136766 149137075 -40142479 - AluSx SINE Alu 0 309 1 959 136 7 0 chr6 149137181 149137328 -40142226 + L1P5 LINE L1 5556 5703 -448 228 224 0 0 chr6 149137310 149137359 -40142195 - L1MC4 LINE L1 -1342 6700 6652 * 286 284 23 0 chr6 149137371 149137459 -40142095 - L1MC4 LINE L1 -1339 6703 6614 2545 84 11 42 chr6 149137468 149137850 -40141704 + L1PB1 LINE L1 5782 6151 0 1987 134 24 7 chr6 149138210 149138501 -40141053 + AluSx SINE Alu 2 297 -15 1469 108 0 14 chr6 149138781 149139004 -40140550 - L1PA14 LINE L1 -1 6160 5941 2375 112 0 0 chr6 149139011 149139316 -40140238 - AluSx SINE Alu -7 305 1 2114 122 0 42 chr6 149139316 149139628 -40139926 - AluSx SINE Alu -13 299 1 211 278 22 33 chr6 149139996 149140086 -40139468 + L2 LINE L2 1884 1972 -1342 479 302 54 0 chr6 149140226 149140375 -40139179 + MIR SINE MIR 105 261 -1 284 313 0 12 chr6 149140432 149140515 -40139039 - L2 LINE L2 -192 3080 2999 824 49 0 29 chr6 149140517 149140619 -40138935 + AluYa5 SINE Alu 35 133 -178 2345 77 0 0 chr6 149140779 149141064 -40138490 + AluSg SINE Alu 1 285 -25 198 0 0 0 chr6 149141781 149141803 -40137751 + (T)n Simple_repeat Simple_repeat 1 22 0 701 168 0 18 chr6 149141957 149142070 -40137484 + AluJo SINE Alu 2 112 -200 259 132 0 0 chr6 149142070 149142108 -40137446 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 897 246 5 0 chr6 149142108 149142295 -40137259 + AluJo SINE Alu 101 288 -24 236 286 13 13 chr6 149142384 149142461 -40137093 - MIR SINE MIR -113 149 73 192 321 54 92 chr6 149142706 149142860 -40136694 + L2 LINE L2 2556 2714 -600 2219 117 3 0 chr6 149142860 149143158 -40136396 - AluSx SINE Alu -13 299 1 192 321 54 92 chr6 149143158 149143374 -40136180 + L2 LINE L2 2714 2912 -402 1300 190 72 4 chr6 149143467 149143746 -40135808 + Charlie4a DNA MER1_type 20 317 -191 1997 122 27 10 chr6 149143752 149144046 -40135508 + AluSg SINE Alu 1 299 -11 1696 161 13 10 chr6 149144056 149144366 -40135188 + L1MB3 LINE L1 5873 6183 0 22 0 0 0 chr6 149144852 149144874 -40134680 + AT_rich Low_complexity Low_complexity 1 22 0 225 197 0 0 chr6 149144874 149144940 -40134614 + T-rich Low_complexity Low_complexity 1 66 0 1635 177 17 10 chr6 149144993 149145281 -40134273 - AluJo SINE Alu -22 290 1 2780 13 0 3 chr6 149146132 149146434 -40133120 + AluY SINE Alu 1 301 -10 1815 131 4 0 chr6 149147109 149147376 -40132178 + AluSx SINE Alu 42 309 -3 201 262 124 35 chr6 149147599 149147744 -40131810 - L2 LINE L2 -1168 2146 1989 746 40 30 0 chr6 149147764 149147864 -40131690 + (TTCTC)n Simple_repeat Simple_repeat 4 106 0 1784 148 3 25 chr6 149147864 149148147 -40131407 - AluJo SINE Alu -27 285 9 553 206 0 62 chr6 149148895 149148996 -40130558 - MIR SINE MIR -1 261 171 2083 137 0 0 chr6 149148996 149149313 -40130241 - AluSx SINE Alu 0 317 1 553 206 0 62 chr6 149149313 149149370 -40130184 - MIR SINE MIR -91 171 112 1989 113 17 3 chr6 149149370 149149661 -40129893 + AluY SINE Alu 1 295 -16 1115 108 77 52 chr6 149150011 149150233 -40129321 + AluSg/x SINE Alu 101 310 0 718 184 32 0 chr6 149150244 149150369 -40129185 + FLAM_C SINE Alu 2 130 -13 213 271 114 43 chr6 149150434 149150574 -40128980 + MIR SINE MIR 110 259 -3 1741 155 29 4 chr6 149150732 149151009 -40128545 - AluJo SINE Alu -28 284 1 722 178 0 48 chr6 149151253 149151399 -40128155 + FLAM_C SINE Alu 2 140 -3 472 303 42 0 chr6 149151412 149151577 -40127977 - MIR SINE MIR -65 197 26 2477 77 0 3 chr6 149151587 149151898 -40127656 - AluY SINE Alu -1 310 1 415 148 0 0 chr6 149152191 149152252 -40127302 - AluS SINE Alu -256 62 2 2438 76 3 0 chr6 149152310 149152612 -40126942 + AluY SINE Alu 1 303 -8 1005 176 0 16 chr6 149152830 149153012 -40126542 + FRAM SINE Alu 1 176 0 758 262 62 53 chr6 149153035 149153106 -40126448 + MLT1H1 LTR MaLR 30 99 -450 180 0 0 0 chr6 149153106 149153126 -40126428 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 758 262 62 53 chr6 149153126 149153528 -40126026 + MLT1H1 LTR MaLR 99 542 -7 1559 122 113 0 chr6 149153568 149153806 -40125748 + AluSq SINE Alu 1 265 -48 596 236 0 0 chr6 149153807 149153930 -40125624 + AluJo/FRAM SINE Alu 190 312 0 2066 113 3 26 chr6 149154274 149154585 -40124969 + AluSq SINE Alu 3 306 -7 1344 149 0 0 chr6 149154593 149154787 -40124767 + AluSg/x SINE Alu 103 296 -14 856 235 0 0 chr6 149154847 149155009 -40124545 - FRAM SINE Alu -4 162 1 227 303 128 18 chr6 149155143 149155252 -40124302 - L2 LINE L2 -9 3304 3184 2426 83 0 10 chr6 149155336 149155637 -40123917 + AluSx SINE Alu 1 298 -14 1640 153 68 7 chr6 149155724 149156005 -40123549 - AluJb SINE Alu -14 298 1 2020 173 9 0 chr6 149156635 149156964 -40122590 + MER2 DNA MER2_type 1 332 -13 336 234 126 27 chr6 149157096 149157207 -40122347 - L2 LINE L2 -1 3312 3191 2170 117 0 0 chr6 149157756 149158054 -40121500 - AluSx SINE Alu -13 299 2 218 81 27 0 chr6 149158123 149158160 -40121394 + (GA)n Simple_repeat Simple_repeat 2 39 0 258 125 0 0 chr6 149158556 149158604 -40120950 + (TCC)n Simple_repeat Simple_repeat 1 48 0 2107 137 0 0 chr6 149159780 149160086 -40119468 - AluSx SINE Alu -6 306 1 2034 120 7 26 chr6 149160559 149160868 -40118686 + AluSx SINE Alu 1 303 -9 201 39 0 0 chr6 149161161 149161187 -40118367 + (CAA)n Simple_repeat Simple_repeat 2 27 0 493 261 186 6 chr6 149161299 149161460 -40118094 + MIR SINE MIR 33 222 -40 874 241 15 64 chr6 149161797 149161974 -40117580 + MIR SINE MIR 9 170 -92 2109 131 0 0 chr6 149161974 149162271 -40117283 - AluSx SINE Alu -15 297 1 874 241 15 64 chr6 149162271 149162358 -40117196 + MIR SINE MIR 170 260 -2 587 159 103 48 chr6 149162430 149162587 -40116967 + FLAM_C SINE Alu 1 133 0 265 301 14 0 chr6 149162839 149162912 -40116642 + MIR3 SINE MIR 120 193 -15 697 251 109 0 chr6 149163659 149163842 -40115712 + MIR SINE MIR 51 253 -9 879 160 0 0 chr6 149164956 149165087 -40114467 + FLAM_C SINE Alu 1 131 -2 261 0 0 0 chr6 149165942 149165971 -40113583 + (A)n Simple_repeat Simple_repeat 1 29 0 204 317 0 12 chr6 149167145 149167227 -40112327 + GA-rich Low_complexity Low_complexity 1 81 0 195 129 0 0 chr6 149167342 149167373 -40112181 + (T)n Simple_repeat Simple_repeat 1 31 0 204 229 12 72 chr6 149168012 149168095 -40111459 + MIR SINE MIR 70 147 -61 279 114 0 0 chr6 149168099 149168143 -40111411 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 680 198 25 75 chr6 149168635 149168800 -40110754 + L1ME1 LINE L1 6013 6164 0 1819 77 7 6 chr6 149168972 149169265 -40110289 + THE1C LTR MaLR 1 374 -1 1965 146 52 24 chr6 149169517 149169846 -40109708 + MER44D DNA MER2_type 1 608 -1 380 20 20 0 chr6 149169847 149169896 -40109658 + (TG)n Simple_repeat Simple_repeat 1 50 0 181 337 70 0 chr6 149169947 149170033 -40109521 - L2 LINE L2 -213 3059 2968 21 0 0 0 chr6 149170285 149170306 -40109248 + AT_rich Low_complexity Low_complexity 1 21 0 273 317 12 0 chr6 149170386 149170468 -40109086 + L2 LINE L2 3189 3271 -1 1538 199 11 0 chr6 149170709 149170986 -40108568 + AluJb SINE Alu 1 280 -32 216 97 0 0 chr6 149170987 149171018 -40108536 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 348 269 8 62 chr6 149171192 149171322 -40108232 + MIR SINE MIR 67 189 -73 2084 142 0 7 chr6 149171730 149172040 -40107514 - AluJb SINE Alu -4 308 1 1568 178 36 30 chr6 149172212 149172515 -40107039 + AluJo SINE Alu 1 305 -7 278 259 0 0 chr6 149174524 149174578 -40104976 + MIR SINE MIR 49 102 -160 2109 249 32 32 chr6 149174702 149175215 -40104339 + MLT1G LTR MaLR 1 555 -40 2232 108 0 0 chr6 149175215 149175512 -40104042 + AluSx SINE Alu 1 297 -15 2109 249 32 32 chr6 149175512 149175535 -40104019 + MLT1G LTR MaLR 555 577 -18 609 87 10 19 chr6 149175539 149175643 -40103911 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 1745 189 56 17 chr6 149175848 149176208 -40103346 - MLT1A2 LTR MaLR 0 374 1 302 293 96 69 chr6 149176353 149176906 -40102648 + L1ME LINE L1 5257 5478 -688 1781 180 0 3 chr6 149176980 149177280 -40102274 + AluJb SINE Alu 2 300 -12 495 118 0 0 chr6 149177452 149177537 -40102017 + (TC)n Simple_repeat Simple_repeat 2 86 0 1564 174 40 37 chr6 149177540 149177839 -40101715 - AluJo SINE Alu -12 300 1 556 218 33 37 chr6 149178085 149178219 -40101335 - MIR3 SINE MIR -6 202 68 2527 81 0 0 chr6 149178737 149179045 -40100509 + AluSg SINE Alu 1 308 -2 363 44 0 0 chr6 149179045 149179090 -40100464 + (TA)n Simple_repeat Simple_repeat 2 46 0 22 56 0 0 chr6 149179312 149179348 -40100206 + AT_rich Low_complexity Low_complexity 1 36 0 85 42 0 14 chr6 149179569 149179599 -40099955 + AT_rich Low_complexity Low_complexity 1 30 -110 1985 162 0 3 chr6 149179599 149179908 -40099646 + AluSg SINE Alu 1 308 -2 85 42 0 14 chr6 149179908 149180019 -40099535 + AT_rich Low_complexity Low_complexity 30 140 0 419 314 47 0 chr6 149180417 149180589 -40098965 + MIR SINE MIR 80 259 -3 186 406 15 23 chr6 149181228 149181361 -40098193 - L2 LINE L2 -629 2685 2554 28 0 0 0 chr6 149181592 149181620 -40097934 + AT_rich Low_complexity Low_complexity 1 28 0 937 158 0 0 chr6 149181620 149181753 -40097801 - FLAM_C SINE Alu 0 133 1 1031 233 31 4 chr6 149181794 149182022 -40097532 + MIR SINE MIR 3 236 -26 1538 110 0 23 chr6 149182201 149182457 -40097097 + AluSg/x SINE Alu 69 319 0 476 264 82 22 chr6 149182482 149182664 -40096890 - Charlie8 DNA MER1_type -2133 284 92 351 0 0 0 chr6 149182934 149182973 -40096581 + (TG)n Simple_repeat Simple_repeat 2 40 0 1226 138 0 0 chr6 149183170 149183344 -40096210 - AluSg/x SINE Alu -5 305 132 1683 169 20 10 chr6 149183384 149183679 -40095875 + AluJo SINE Alu 5 302 -10 2214 112 0 3 chr6 149183934 149184237 -40095317 + AluSq SINE Alu 1 302 -11 864 209 0 0 chr6 149184237 149184395 -40095159 - AluJo SINE Alu -32 280 123 787 183 0 29 chr6 149184443 149184580 -40094974 - AluJo SINE Alu -169 133 1 293 287 35 0 chr6 149185481 149185568 -40093986 + MIR SINE MIR 172 261 -1 1902 152 17 3 chr6 149185576 149185866 -40093688 + AluSx SINE Alu 1 294 -18 660 61 0 0 chr6 149185972 149186054 -40093500 + L1MA1 LINE L1 6217 6298 -4 23 54 0 0 chr6 149186114 149186151 -40093403 + AT_rich Low_complexity Low_complexity 1 37 0 807 198 0 92 chr6 149186201 149186418 -40093136 - MLT2B1 LTR ERVL 0 520 324 805 174 23 0 chr6 149186447 149186579 -40092975 - AluJ SINE Alu -176 136 2 712 223 142 47 chr6 149186581 149186814 -40092740 - MLT2D LTR ERVL -157 257 3 22 0 0 0 chr6 149187001 149187023 -40092531 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 149187331 149187353 -40092201 + AT_rich Low_complexity Low_complexity 1 22 0 2237 101 3 16 chr6 149187439 149187755 -40091799 + AluSp SINE Alu 1 312 -1 2187 123 7 0 chr6 149188235 149188528 -40091026 - AluSx SINE Alu -17 295 1 444 37 0 0 chr6 149188967 149189021 -40090533 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 631 263 181 12 chr6 149189021 149189341 -40090213 - L2 LINE L2 -13 3300 2927 664 186 179 14 chr6 149190215 149190355 -40089199 - FRAM SINE Alu -14 162 1 2089 140 0 3 chr6 149190517 149190824 -40088730 - AluSx SINE Alu -6 306 1 240 59 0 0 chr6 149190983 149191017 -40088537 + (GA)n Simple_repeat Simple_repeat 1 34 0 349 280 60 95 chr6 149191017 149191267 -40088287 + MIR SINE MIR 3 243 -19 367 311 91 98 chr6 149192142 149192582 -40086972 - L2 LINE L2 -9 3263 2827 815 136 0 43 chr6 149192673 149192813 -40086741 + AluJo SINE Alu 1 134 -178 2125 113 0 7 chr6 149193063 149193369 -40086185 - AluSx SINE Alu 0 304 1 1323 175 107 25 chr6 149193386 149193666 -40085888 - AluJo SINE Alu -9 303 1 1686 169 3 57 chr6 149193703 149194017 -40085537 - AluJb SINE Alu -15 297 1 813 143 7 64 chr6 149194108 149194248 -40085306 + FLAM_A SINE Alu 1 132 -1 2306 89 3 0 chr6 149194482 149194773 -40084781 + AluSp SINE Alu 1 292 -21 527 312 65 34 chr6 149194812 149195290 -40084264 - L2 LINE L2 -34 3279 2790 1616 186 0 33 chr6 149195410 149195716 -40083838 + AluJo SINE Alu 1 296 -16 301 247 146 0 chr6 149195754 149195843 -40083711 - LTR16C LTR ERVL 0 491 390 398 265 147 29 chr6 149196890 149197026 -40082528 - MER5B DNA MER1_type 0 178 27 1783 181 13 3 chr6 149198225 149198529 -40081025 + AluJb SINE Alu 1 307 -5 2189 118 20 0 chr6 149198584 149198890 -40080664 + AluSx SINE Alu 1 312 0 226 248 105 0 chr6 149199056 149199161 -40080393 - L1ME4a LINE L1 -46 6075 5960 180 91 68 0 chr6 149199280 149199324 -40080230 + (TATAG)n Simple_repeat Simple_repeat 4 50 0 21 0 0 0 chr6 149199483 149199504 -40080050 + AT_rich Low_complexity Low_complexity 1 21 0 851 167 27 27 chr6 149199665 149199851 -40079703 - MER53 DNA DNA -2 187 2 2174 132 0 0 chr6 149200106 149200410 -40079144 + AluSx SINE Alu 1 304 -8 369 316 61 103 chr6 149201387 149201862 -40077692 + L2 LINE L2 2818 3272 0 1450 183 45 80 chr6 149203308 149203561 -40075993 - L1MC4a LINE L1 -1204 6604 6369 2190 108 3 3 chr6 149203561 149203849 -40075705 - AluSq SINE Alu -25 288 1 1450 183 45 80 chr6 149203849 149203994 -40075560 - L1MC4a LINE L1 -1439 6369 6220 1578 203 23 3 chr6 149204124 149204429 -40075125 - AluJb SINE Alu -1 311 1 8178 79 6 3 chr6 149204549 149205603 -40073951 + MER11C LTR ERVK 1 1057 -14 2632 45 0 0 chr6 149207056 149207365 -40072189 - AluY SINE Alu -2 309 1 917 154 64 170 chr6 149208079 149208334 -40071220 - MER69 DNA AcHobo -12 2514 2310 2188 121 0 0 chr6 149208334 149208631 -40070923 - AluSq SINE Alu -14 299 3 917 154 64 170 chr6 149208631 149208751 -40070803 - MER69 DNA AcHobo -216 2310 2179 1314 253 75 94 chr6 149208752 149209286 -40070268 - MER69 DNA AcHobo -2002 524 1 299 176 255 29 chr6 149209289 149209391 -40070163 + MIR SINE MIR 81 205 -57 1087 299 116 19 chr6 149209741 149210087 -40069467 + L2 LINE L2 2346 2657 -656 2423 85 0 0 chr6 149210087 149210382 -40069172 + AluSq SINE Alu 1 295 -18 1087 299 116 19 chr6 149210382 149210902 -40068652 + L2 LINE L2 2657 3308 -5 183 42 0 0 chr6 149211081 149211105 -40068449 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2323 142 95 45 chr6 149211318 149211761 -40067793 - MLT1C LTR MaLR -2 465 1 2819 116 78 0 chr6 149211960 149212357 -40067197 + MSTA LTR MaLR 1 428 0 1503 150 109 29 chr6 149213112 149213386 -40066168 - AluJb SINE Alu -16 296 1 186 43 0 0 chr6 149213427 149213450 -40066104 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 353 243 135 27 chr6 149213632 149213743 -40065811 + MIR SINE MIR 5 127 -135 204 40 0 0 chr6 149214681 149214706 -40064848 + (TTA)n Simple_repeat Simple_repeat 2 26 0 899 131 0 0 chr6 149214706 149214828 -40064726 - AluSq/x SINE Alu -191 122 1 23 0 0 0 chr6 149214828 149214851 -40064703 + AT_rich Low_complexity Low_complexity 1 23 0 229 250 0 0 chr6 149215027 149215075 -40064479 + MER5A DNA MER1_type 142 189 0 1255 192 125 29 chr6 149215157 149215470 -40064084 + MER2 DNA MER2_type 1 343 -1 2390 86 0 3 chr6 149216087 149216388 -40063166 - AluY SINE Alu -11 300 1 683 246 29 18 chr6 149216395 149216566 -40062988 - MER5B DNA MER1_type -2 176 4 1963 134 43 7 chr6 149216823 149217122 -40062432 - AluSg SINE Alu 0 310 1 1323 118 0 0 chr6 149217442 149217620 -40061934 - AluSg/x SINE Alu -1 309 132 2286 101 3 22 chr6 149218880 149219196 -40060358 + AluSx SINE Alu 1 310 -2 224 30 30 0 chr6 149219638 149219671 -40059883 + (TG)n Simple_repeat Simple_repeat 2 35 0 225 0 0 0 chr6 149219754 149219779 -40059775 + (TA)n Simple_repeat Simple_repeat 2 26 0 26 0 0 0 chr6 149220196 149220222 -40059332 + AT_rich Low_complexity Low_complexity 1 26 0 1719 220 71 33 chr6 149220335 149220785 -40058769 - MLT1C LTR MaLR 0 467 1 1097 148 0 0 chr6 149221228 149221390 -40058164 - AluJo SINE Alu -15 297 136 999 130 59 24 chr6 149223006 149223175 -40056379 - AluSg/x SINE Alu -6 306 132 567 304 123 32 chr6 149223585 149223901 -40055653 + L2 LINE L2 2620 2964 -350 311 223 117 11 chr6 149224030 149224124 -40055430 + Charlie8 DNA MER1_type 2314 2417 0 411 264 146 39 chr6 149224211 149224389 -40055165 + L2 LINE L2 3117 3313 0 2419 100 3 0 chr6 149224680 149224990 -40054564 - AluSp SINE Alu -2 311 1 240 281 0 0 chr6 149225075 149225132 -40054422 + L2 LINE L2 3177 3233 -39 661 230 0 16 chr6 149225604 149225730 -40053824 - FLAM_C SINE Alu -17 126 3 536 271 79 34 chr6 149225812 149226273 -40053281 + LTR33 LTR ERVL 2 521 0 2108 101 4 0 chr6 149226570 149226838 -40052716 - AluSc SINE Alu -40 269 1 2206 101 0 3 chr6 149226868 149227155 -40052399 + AluSx SINE Alu 1 286 -26 201 121 0 0 chr6 149227587 149227620 -40051934 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1961 126 34 45 chr6 149228087 149228646 -40050908 - MER51A LTR ERV1 0 634 1 228 156 16 31 chr6 149229184 149229248 -40050306 + CT-rich Low_complexity Low_complexity 2 64 0 198 0 0 0 chr6 149229485 149229507 -40050047 + (A)n Simple_repeat Simple_repeat 1 22 0 1571 170 14 14 chr6 149229568 149229872 -40049682 - AluJo SINE Alu 0 304 1 429 250 9 26 chr6 149230592 149230708 -40048846 - MIR SINE MIR -54 208 95 358 316 36 22 chr6 149230746 149230885 -40048669 - MIR SINE MIR -75 187 47 261 0 0 0 chr6 149230925 149230954 -40048600 + (T)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr6 149231118 149231148 -40048406 + AT_rich Low_complexity Low_complexity 1 30 0 226 222 20 131 chr6 149231273 149231372 -40048182 + L2 LINE L2 3185 3272 0 2154 117 0 3 chr6 149231766 149232064 -40047490 - AluSg SINE Alu -13 297 1 219 306 16 0 chr6 149232079 149232141 -40047413 + MIR3 SINE MIR 125 187 -21 297 128 0 0 chr6 149232472 149232519 -40047035 + (TG)n Simple_repeat Simple_repeat 2 48 0 759 256 36 24 chr6 149233070 149233320 -40046234 + MER112 DNA MER1_type 1 253 -3 1861 171 3 3 chr6 149233452 149233757 -40045797 + AluSx SINE Alu 1 305 -7 402 159 29 0 chr6 149233934 149234003 -40045551 + FAM SINE Alu 94 164 -21 458 221 184 60 chr6 149234597 149234864 -40044690 + MER102b DNA MER1_type 34 333 -8 182 37 37 0 chr6 149235026 149235053 -40044501 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1257 200 32 63 chr6 149235057 149235171 -40044383 + AluJo SINE Alu 1 117 -195 830 83 8 0 chr6 149235171 149235291 -40044263 + (GGAA)n Simple_repeat Simple_repeat 4 124 0 1257 200 32 63 chr6 149235291 149235491 -40044063 + AluJo SINE Alu 117 305 -7 3520 67 0 0 chr6 149235779 149236210 -40043344 + L1PA6 LINE L1 5723 6153 -1 23 33 0 0 chr6 149236366 149236396 -40043158 + AT_rich Low_complexity Low_complexity 1 30 0 181 324 28 41 chr6 149236435 149236580 -40042974 - MIR SINE MIR -38 224 82 336 162 59 158 chr6 149236807 149237029 -40042525 - L1ME4a LINE L1 0 6121 5922 312 48 0 0 chr6 149237154 149237196 -40042358 + (TC)n Simple_repeat Simple_repeat 1 42 0 * 318 26 0 0 chr6 149237195 149237234 -40042320 + (CA)n Simple_repeat Simple_repeat 1 39 0 480 285 19 38 chr6 149237235 149237393 -40042161 - MIR SINE MIR -92 170 16 2277 96 0 10 chr6 149237934 149238225 -40041329 - AluSc SINE Alu -21 288 1 933 152 0 0 chr6 149238809 149238941 -40040613 - AluJb SINE Alu -180 132 1 236 288 123 49 chr6 149238983 149239146 -40040408 + MLT1K LTR MaLR 3 177 -411 371 277 99 40 chr6 149239464 149239666 -40039888 - MIR SINE MIR -2 260 47 216 200 75 75 chr6 149240100 149240180 -40039374 - L2 LINE L2 -228 3044 2965 2060 136 16 7 chr6 149240554 149240863 -40038691 - AluSx SINE Alu 0 312 1 474 279 97 84 chr6 149240942 149241168 -40038386 + MIR SINE MIR 34 262 0 2216 126 0 10 chr6 149241640 149241950 -40037604 + AluSx SINE Alu 5 311 -1 216 91 91 0 chr6 149241950 149242005 -40037549 + GA-rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr6 149242193 149242214 -40037340 + AT_rich Low_complexity Low_complexity 1 21 0 1933 167 0 0 chr6 149242322 149242621 -40036933 + AluJb SINE Alu 1 299 -13 637 249 77 60 chr6 149242818 149242899 -40036655 - MIR SINE MIR -13 249 171 1873 152 3 0 chr6 149242899 149243182 -40036372 - AluSx SINE Alu -9 303 20 637 249 77 60 chr6 149243182 149243333 -40036221 - MIR SINE MIR -91 171 13 653 173 0 9 chr6 149244420 149244530 -40035024 + FLAM_A SINE Alu 34 142 0 280 152 30 15 chr6 149246285 149246351 -40033203 + CT-rich Low_complexity Low_complexity 2 68 0 829 164 0 0 chr6 149246380 149246502 -40033052 - AluJb SINE Alu -187 125 4 1565 197 7 20 chr6 149246519 149246814 -40032740 - AluJo SINE Alu -19 293 3 233 216 95 69 chr6 149246876 149246992 -40032562 + LTR33A LTR ERVL 71 189 -334 1606 258 16 16 chr6 149246995 149247382 -40032172 + MSTD LTR MaLR 10 396 0 516 188 0 10 chr6 149247389 149247490 -40032064 + MSTD-int LTR MaLR 7 106 -1265 2243 120 7 0 chr6 149247536 149247845 -40031709 - AluSp SINE Alu -2 311 1 499 229 101 34 chr6 149247869 149248048 -40031506 + LTR33 LTR ERVL 331 521 0 891 189 86 11 chr6 149248449 149248624 -40030930 + MER5A DNA MER1_type 1 188 -1 1833 224 28 18 chr6 149249335 149249727 -40029827 + MSTD LTR MaLR 1 396 0 3936 250 31 35 chr6 149249729 149250744 -40028810 + MSTD-int LTR MaLR 2 1012 -723 1993 104 70 0 chr6 149250963 149251233 -40028321 + AluSx SINE Alu 1 289 -23 271 339 53 12 chr6 149252091 149252262 -40027292 + LTR67 LTR ERVL 372 549 -8 308 409 39 0 chr6 149252489 149252616 -40026938 + L2 LINE L2 3121 3252 -20 317 321 195 0 chr6 149252700 149252859 -40026695 - MIR SINE MIR -48 214 25 222 318 0 0 chr6 149253391 149253454 -40026100 - L2 LINE L2 0 3313 3251 23 0 0 0 chr6 149253911 149253934 -40025620 + AT_rich Low_complexity Low_complexity 1 23 0 2243 113 0 0 chr6 149253934 149254243 -40025311 - AluSg1 SINE Alu 0 309 1 670 118 31 14 chr6 149256209 149256506 -40023048 + (TA)n Simple_repeat Simple_repeat 1 302 0 234 80 0 20 chr6 149256548 149256598 -40022956 - LTR66 LTR ERVL -172 438 390 999 157 24 0 chr6 149256675 149256841 -40022713 - AluJo SINE Alu -29 283 114 1030 187 14 29 chr6 149256898 149257107 -40022447 - L1MB5 LINE L1 0 6174 5969 1212 106 6 0 chr6 149257156 149257316 -40022238 + AluSx SINE Alu 1 161 -151 1596 120 4 0 chr6 149257316 149257541 -40022013 + AluSq SINE Alu 77 302 -11 396 319 108 52 chr6 149257873 149257905 -40021649 - L2 LINE L2 -1696 1618 1589 1101 105 0 0 chr6 149257905 149258067 -40021487 + (GGAA)n Simple_repeat Simple_repeat 1 162 0 396 319 108 52 chr6 149258067 149258573 -40020981 - L2 LINE L2 -1725 1589 1050 2200 114 3 7 chr6 149258738 149259044 -40020510 - AluSq SINE Alu -8 305 1 1863 117 102 3 chr6 149259068 149259351 -40020203 + AluSx SINE Alu 1 311 -1 402 309 50 17 chr6 149259735 149259916 -40019638 + MIR SINE MIR 20 206 -56 1891 294 31 7 chr6 149260285 149260840 -40018714 + MER69B DNA AcHobo 30 597 -629 1734 173 0 7 chr6 149260891 149261180 -40018374 + AluJb SINE Alu 17 303 -9 2089 209 37 18 chr6 149261183 149261283 -40018271 + MER69B DNA AcHobo 589 686 -1840 1654 183 0 63 chr6 149261283 149261616 -40017938 - AluJb SINE Alu 0 312 1 2089 209 37 18 chr6 149261616 149262061 -40017493 + MER69B DNA AcHobo 686 1148 -1378 1852 171 52 30 chr6 149262061 149262424 -40017130 - THE1C LTR MaLR -4 371 1 2089 209 37 18 chr6 149262424 149262446 -40017108 + MER69B DNA AcHobo 1148 1168 -58 1693 138 132 0 chr6 149262446 149262757 -40016797 - L1MA5A LINE L1 -4 6293 5942 341 208 14 0 chr6 149262757 149262829 -40016725 + MER69B DNA AcHobo 1150 1222 -4 261 0 0 0 chr6 149263161 149263190 -40016364 + (A)n Simple_repeat Simple_repeat 1 29 0 674 143 8 0 chr6 149263274 149263393 -40016161 + (TAGA)n Simple_repeat Simple_repeat 4 123 0 1788 173 10 10 chr6 149264137 149264630 -40014924 + AluSx SINE Alu 1 312 0 1499 11 0 11 chr6 149264423 149264798 -40014756 + (GAAA)n Simple_repeat Simple_repeat 1 373 0 242 29 29 0 chr6 149265374 149265409 -40014145 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 792 328 97 21 chr6 149265901 149266367 -40013187 - LTR33 LTR ERVL -1 520 20 598 250 43 27 chr6 149266590 149266778 -40012776 - MER112 DNA MER1_type -5 255 65 29 28 0 0 chr6 149266802 149266838 -40012716 + AT_rich Low_complexity Low_complexity 1 36 0 2300 104 0 16 chr6 149267048 149267355 -40012199 + AluSx SINE Alu 1 302 -10 23 33 0 0 chr6 149267778 149267808 -40011746 + AT_rich Low_complexity Low_complexity 1 30 0 1736 186 3 7 chr6 149268191 149268498 -40011056 + AluJo SINE Alu 1 306 -6 624 257 47 87 chr6 149268803 149269079 -40010475 - MLT1L LTR MaLR -87 528 264 517 284 114 30 chr6 149269137 149269373 -40010181 - MLT1L LTR MaLR -359 256 1 631 189 82 0 chr6 149270025 149270147 -40009407 + FLAM_C SINE Alu 10 141 -2 274 313 62 8 chr6 149270353 149270481 -40009073 - MIR SINE MIR -1 261 127 1918 208 35 11 chr6 149270915 149271348 -40008206 - L1MD3 LINE L1 -114 7881 7439 437 219 89 27 chr6 149271382 149271528 -40008026 + L2 LINE L2 3159 3313 0 1950 138 12 12 chr6 149271835 149272155 -40007399 - L1MA8 LINE L1 -3 6288 5969 1460 207 26 77 chr6 149273213 149273365 -40006189 + MLT1A2 LTR MaLR 4 162 -212 3902 92 12 2 chr6 149273365 149273874 -40005680 + MER75 DNA T2_type 1 514 0 1460 207 26 77 chr6 149273874 149274112 -40005442 + MLT1A2 LTR MaLR 162 374 0 2194 99 20 7 chr6 149274521 149274814 -40004740 + AluSx SINE Alu 1 297 -15 3302 79 42 7 chr6 149275215 149275644 -40003910 - MLT2A1 LTR ERVL 0 444 1 230 143 0 0 chr6 149275931 149275966 -40003588 - MLT1J1 LTR MaLR -123 323 289 507 289 46 41 chr6 149275978 149276175 -40003379 - MLT1I LTR MaLR -205 204 7 748 133 0 0 chr6 149276398 149276503 -40003051 + MER41B-int LTR ERV1 5842 5946 0 3403 148 11 4 chr6 149276505 149277044 -40002510 + MER41B LTR ERV1 3 545 -90 247 362 103 9 chr6 149277157 149277381 -40002173 - L2 LINE L2 -1177 2137 1893 231 367 108 33 chr6 149277402 149277717 -40001837 + L2 LINE L2 2327 2674 -640 2021 268 36 19 chr6 149277717 149278250 -40001304 - MLT1F LTR MaLR 0 542 1 231 367 108 33 chr6 149278250 149278294 -40001260 + L2 LINE L2 2674 2713 -601 405 348 66 81 chr6 149278575 149279288 -40000266 - L2 LINE L2 -2277 1037 336 2422 112 133 16 chr6 149279292 149279675 -39999879 + MSTA LTR MaLR 1 428 0 206 214 0 0 chr6 149279692 149279734 -39999820 + (TG)n Simple_repeat Simple_repeat 2 43 0 691 234 31 30 chr6 149280122 149280378 -39999176 + L1MD3 LINE L1 7572 7995 0 2170 125 3 7 chr6 149280584 149280889 -39998665 + AluSx SINE Alu 1 304 -8 320 216 78 95 chr6 149280909 149281025 -39998529 + L2 LINE L2 3200 3313 0 653 307 79 4 chr6 149281397 149281625 -39997929 - MIR SINE MIR 0 262 18 858 194 29 58 chr6 149281627 149281765 -39997789 - L1ME1 LINE L1 0 6166 6034 1967 147 24 0 chr6 149281765 149282057 -39997497 - AluSq SINE Alu -14 299 1 858 194 29 58 chr6 149282057 149282124 -39997430 - L1ME1 LINE L1 -132 6034 5967 2927 55 3 0 chr6 149282127 149282470 -39997084 + LTR14A LTR ERVK 1 344 0 2210 130 46 0 chr6 149282470 149282816 -39996738 + HERVK14 LTR ERVK 1 362 -5583 8676 48 12 2 chr6 149284397 149285428 -39994126 + HERVK14 LTR ERVK 1828 2868 -3077 6186 61 42 14 chr6 149285412 149286219 -39993335 + HERVK14 LTR ERVK 4930 5759 -186 * 337 199 0 18 chr6 149286219 149286294 -39993260 + MER41C LTR ERV1 1 61 -493 857 43 0 51 chr6 149286294 149286411 -39993143 + HERVK14 LTR ERVK 5835 5945 0 2748 43 55 0 chr6 149286414 149286740 -39992814 + LTR14A LTR ERVK 1 344 0 1490 210 67 21 chr6 149286740 149287116 -39992438 - L1ME1 LINE L1 -194 5972 5580 206 241 35 11 chr6 149287447 149287534 -39992020 + A-rich Low_complexity Low_complexity 4 92 0 2216 97 3 7 chr6 149287544 149287834 -39991720 + AluSp SINE Alu 25 313 0 190 143 0 0 chr6 149288935 149288963 -39990591 + MIR SINE MIR 114 141 -67 526 256 17 0 chr6 149288990 149289107 -39990447 + MIR SINE MIR 2 120 -142 256 211 0 0 chr6 149289452 149289509 -39990045 - L1PB1 LINE L1 -1022 5124 5068 6711 92 9 5 chr6 149289519 149290523 -39989031 + L1PB1 LINE L1 5141 6148 -3 2002 114 0 40 chr6 149291430 149291728 -39987826 - AluSx SINE Alu -24 288 3 319 354 39 8 chr6 149292185 149292315 -39987239 + MER91A DNA MER1_type 3 136 -60 216 305 76 38 chr6 149292672 149292777 -39986777 - L2 LINE L2 -7 3265 3157 259 291 31 0 chr6 149294475 149294602 -39984952 + L1ME LINE L1 5754 5884 -237 2730 188 19 4 chr6 149295037 149295573 -39983981 - L1MC3 LINE L1 -7 7778 7235 209 156 22 22 chr6 149295713 149295758 -39983796 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2013 122 3 14 chr6 149296243 149296574 -39982980 - AluSq SINE Alu 0 328 1 1428 67 77 5 chr6 149297068 149297263 -39982291 + L1PA15 LINE L1 5956 6164 -1 675 188 24 0 chr6 149299432 149299597 -39979957 + CT-rich Low_complexity Low_complexity 4 172 0 2250 129 7 0 chr6 149299830 149300140 -39979414 - AluSx SINE Alu 0 312 1 2365 75 0 0 chr6 149300508 149300800 -39978754 + AluY SINE Alu 2 293 -18 24 53 0 0 chr6 149300942 149300980 -39978574 + AT_rich Low_complexity Low_complexity 1 38 0 709 256 60 30 chr6 149300999 149301233 -39978321 + MIR SINE MIR 14 254 -8 2067 127 0 0 chr6 149301280 149301595 -39977959 - AluSq SINE Alu 0 315 1 236 305 235 15 chr6 149302907 149303107 -39976447 + MIR SINE MIR 19 262 0 204 250 0 44 chr6 149303385 149303453 -39976101 + (TAAA)n Simple_repeat Simple_repeat 3 67 0 309 260 41 48 chr6 149304672 149304818 -39974736 + MLT1K LTR MaLR 428 572 -16 933 199 13 76 chr6 149304923 149305159 -39974395 + AluJo SINE Alu 87 307 -5 24 77 0 0 chr6 149305178 149305230 -39974324 + AT_rich Low_complexity Low_complexity 1 52 0 219 250 0 0 chr6 149305602 149305662 -39973892 + A-rich Low_complexity Low_complexity 1 60 0 1423 145 31 41 chr6 149305756 149306046 -39973508 - L1MA2 LINE L1 -1 6303 6017 281 330 18 9 chr6 149306046 149306158 -39973396 + L2 LINE L2 1818 1930 -1384 2231 111 0 3 chr6 149306158 149306456 -39973098 - AluSq SINE Alu -16 297 1 6672 74 4 12 chr6 149306534 149308083 -39971471 - L1PA8 LINE L1 0 6172 4583 286 240 186 49 chr6 149308180 149308384 -39971170 + L2 LINE L2 2179 2410 -904 1518 192 75 56 chr6 149308435 149308908 -39970646 - L1MDa LINE L1 -3559 2981 2482 201 94 0 0 chr6 149308908 149308940 -39970614 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1518 192 75 56 chr6 149308940 149309207 -39970347 - L1MDa LINE L1 -4058 2482 2221 207 307 23 23 chr6 149309664 149309752 -39969802 + GA-rich Low_complexity Low_complexity 5 92 0 494 256 137 26 chr6 149311590 149311824 -39967730 + MIR SINE MIR 3 262 0 473 315 39 17 chr6 149311891 149312069 -39967485 + MER5A DNA MER1_type 7 188 -1 320 125 0 0 chr6 149312295 149312343 -39967211 - L2 LINE L2 -1 3312 3265 258 331 138 31 chr6 149312383 149312543 -39967011 + L2 LINE L2 2581 2757 -557 1427 175 13 84 chr6 149312982 149313323 -39966231 + AluJo SINE Alu 1 319 0 32 0 0 0 chr6 149313485 149313517 -39966037 + AT_rich Low_complexity Low_complexity 1 32 0 527 306 128 34 chr6 149313594 149313891 -39965663 - MER115 DNA AcHobo -257 436 112 188 256 0 26 chr6 149313954 149313993 -39965561 + L2 LINE L2 3218 3255 -17 14559 206 27 9 chr6 149314541 149319140 -39960414 - L1PB1 LINE L1 -8 6143 1495 395 324 176 20 chr6 149321366 149321672 -39957882 + L3 LINE CR1 921 1274 -303 203 358 55 18 chr6 149321708 149321817 -39957737 + L3 LINE CR1 1392 1504 -73 322 250 0 0 chr6 149322166 149322234 -39957320 + MIR SINE MIR 98 165 -97 2312 107 3 0 chr6 149323052 149323362 -39956192 - AluSp SINE Alu -2 311 1 29 28 0 0 chr6 149323423 149323459 -39956095 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr6 149323753 149323791 -39955763 + AT_rich Low_complexity Low_complexity 1 38 0 370 328 36 104 chr6 149324755 149325005 -39954549 - L2 LINE L2 0 3272 3040 360 0 0 0 chr6 149325050 149325090 -39954464 + (TG)n Simple_repeat Simple_repeat 2 41 0 2479 83 32 3 chr6 149325829 149326177 -39953377 + L1PB2 LINE L1 5792 6149 -2 3412 107 32 4 chr6 149327513 149327688 -39951866 + L1PB1 LINE L1 5606 5775 -376 620 47 0 12 chr6 149327688 149327773 -39951781 + (TA)n Simple_repeat Simple_repeat 2 85 0 3412 107 32 4 chr6 149327773 149328128 -39951426 + L1PB1 LINE L1 5775 6151 0 2683 108 11 0 chr6 149328623 149328994 -39950560 - THE1C LTR MaLR 0 375 1 1164 182 5 5 chr6 149330525 149330734 -39948820 - MER3 DNA MER1_type 0 209 1 230 387 8 16 chr6 149330758 149330882 -39948672 - MIR SINE MIR -67 195 73 1525 255 42 3 chr6 149331678 149332208 -39947346 - L1MCc LINE L1 -3538 3403 2897 2522 197 92 14 chr6 149332427 149332991 -39946563 - L1MD2 LINE L1 -22 6337 5730 2351 206 29 0 chr6 149333025 149333567 -39945987 + L1MC/D LINE L1 5176 5729 -630 1640 282 35 20 chr6 149333608 149334119 -39945435 + MER69 DNA AcHobo 1 519 -707 3287 201 74 58 chr6 149334173 149334344 -39945210 - L1MCc LINE L1 -4599 2342 2175 1838 164 3 3 chr6 149334344 149334650 -39944904 + AluSx SINE Alu 1 306 0 3287 201 74 58 chr6 149334650 149334802 -39944752 - L1MCc LINE L1 -4766 2175 2027 191 36 36 0 chr6 149334802 149334830 -39944724 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1991 143 0 0 chr6 149334832 149335112 -39944442 - AluJo SINE Alu -30 282 3 3287 201 74 58 chr6 149335112 149335998 -39943556 - L1MCc LINE L1 -4914 2027 1100 844 200 83 69 chr6 149336011 149336322 -39943232 - L1MCc LINE L1 -5753 669 1 313 268 0 0 chr6 149336335 149336406 -39943148 - L1MD2 LINE L1 -2212 5596 5526 22 99 0 0 chr6 149337854 149337925 -39941629 + AT_rich Low_complexity Low_complexity 1 71 0 553 322 16 43 chr6 149339068 149339326 -39940228 + MIR SINE MIR 2 252 -10 7687 25 0 0 chr6 149341168 149342067 -39937487 + L1PA4 LINE L1 5254 6152 -3 4487 207 30 29 chr6 149342101 149343138 -39936416 + MER45B DNA AcHobo 3 1040 0 2200 109 0 0 chr6 149343501 149343808 -39935746 - AluSx SINE Alu 0 307 1 404 357 36 74 chr6 149344367 149344784 -39934770 + L2 LINE L2 2836 3236 -36 1974 163 122 13 chr6 149344886 149345272 -39934282 - Tigger2a DNA MER2_type 0 434 7 2122 112 24 3 chr6 149345333 149345629 -39933925 - AluSx SINE Alu -10 302 1 253 326 163 0 chr6 149345640 149345732 -39933822 - L3 LINE CR1 -3 1574 1468 23 33 0 0 chr6 149345732 149345762 -39933792 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 149347179 149347200 -39932354 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr6 149347949 149347975 -39931579 + AT_rich Low_complexity Low_complexity 1 26 0 3392 125 23 18 chr6 149348372 149348933 -39930621 - L1PA16 LINE L1 -17 6149 5586 441 340 35 7 chr6 149349112 149349253 -39930301 + L2 LINE L2 3118 3262 -10 189 171 0 0 chr6 149349261 149349296 -39930258 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 1162 107 0 0 chr6 149349405 149349591 -39929963 - AluSp SINE Alu 0 318 133 351 0 0 0 chr6 149349591 149349630 -39929924 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1722 113 68 11 chr6 149349630 149349896 -39929658 - AluSx SINE Alu -31 281 1 537 284 14 27 chr6 149349926 149350074 -39929480 - MIR3 SINE MIR -32 176 31 2387 87 0 3 chr6 149350672 149350982 -39928572 + AluSg SINE Alu 1 309 -1 1080 174 59 68 chr6 149351019 149351341 -39928213 + L1ME2 LINE L1 5836 6154 -10 2121 208 95 51 chr6 149351391 149352022 -39927532 - MLT2F LTR ERVL 0 663 5 4050 218 58 41 chr6 149352023 149354467 -39925087 - ERVL-F LTR ERVL -15 5749 3103 324 227 34 11 chr6 149354493 149354581 -39924973 - ERVL-F LTR ERVL -2884 2880 2791 621 189 25 10 chr6 149354584 149354843 -39924711 - MLT2F LTR ERVL -359 304 1 21 0 0 0 chr6 149354884 149354905 -39924649 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 149355051 149355075 -39924479 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 149356296 149356318 -39923236 + AT_rich Low_complexity Low_complexity 1 22 0 245 51 26 0 chr6 149356759 149356798 -39922756 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 2562 53 0 0 chr6 149356863 149357163 -39922391 + AluY SINE Alu 1 300 -11 249 308 28 56 chr6 149357399 149357542 -39922012 - MIR SINE MIR -79 183 45 180 229 36 0 chr6 149357807 149357890 -39921664 + CT-rich Low_complexity Low_complexity 1 86 0 784 191 7 0 chr6 149357901 149358037 -39921517 - FLAM_C SINE Alu -6 137 1 795 176 122 0 chr6 149358351 149358499 -39921055 + FRAM SINE Alu 1 166 0 2342 88 7 0 chr6 149358576 149358882 -39920672 - AluSg SINE Alu -1 309 2 204 97 0 0 chr6 149359513 149359544 -39920010 + (A)n Simple_repeat Simple_repeat 1 31 0 270 286 49 65 chr6 149360673 149360754 -39918800 + L1ME3A LINE L1 5788 5869 -301 2350 74 0 13 chr6 149360754 149361053 -39918501 + AluY SINE Alu 1 295 -16 270 286 49 65 chr6 149361053 149361156 -39918398 + L1ME3A LINE L1 5869 5969 -201 26 19 0 58 chr6 149361545 149361597 -39917957 + AT_rich Low_complexity Low_complexity 1 49 0 323 211 144 0 chr6 149361947 149362037 -39917517 + MLT1J1 LTR MaLR 26 128 -318 541 261 96 20 chr6 149362169 149362368 -39917186 - MER58C DNA MER1_type -1 214 1 2295 103 3 19 chr6 149362743 149363055 -39916499 + AluSx SINE Alu 1 307 -5 22 70 0 0 chr6 149365119 149365162 -39914392 + AT_rich Low_complexity Low_complexity 1 43 0 2318 103 0 0 chr6 149365171 149365473 -39914081 - AluSx SINE Alu -10 302 1 375 318 122 20 chr6 149365963 149366259 -39913295 + L2 LINE L2 2948 3273 -40 706 241 86 60 chr6 149366263 149366611 -39912943 + MLT1C LTR MaLR 3 359 -108 1820 139 0 58 chr6 149367078 149367388 -39912166 + AluJo SINE Alu 7 298 -14 204 296 0 0 chr6 149367561 149367605 -39911949 + (TG)n Simple_repeat Simple_repeat 1 44 0 2235 104 0 3 chr6 149368166 149368454 -39911100 - AluSq SINE Alu -26 287 1 456 323 75 10 chr6 149369546 149369747 -39909807 + MIR SINE MIR 14 227 -35 197 304 29 49 chr6 149369843 149369945 -39909609 - MIR SINE MIR -113 149 50 255 191 143 0 chr6 149370304 149370367 -39909187 + MIR SINE MIR 42 113 -95 1109 214 88 20 chr6 149370467 149370808 -39908746 - L1ME3A LINE L1 -7 6163 5800 879 188 18 6 chr6 149370824 149370994 -39908560 + MER58B DNA MER1_type 168 339 -2 439 220 94 50 chr6 149370996 149371155 -39908399 - L1ME3A LINE L1 -361 5809 5644 244 311 67 52 chr6 149371205 149371340 -39908214 - MIR3 SINE MIR -57 151 15 191 374 50 10 chr6 149371474 149371573 -39907981 - MIR3 SINE MIR -17 191 89 1732 148 9 95 chr6 149372299 149372637 -39906917 - AluSx SINE Alu -2 310 2 228 248 203 13 chr6 149372724 149372877 -39906677 - L1ME3A LINE L1 -751 5395 5214 356 267 42 65 chr6 149373069 149373406 -39906148 - L1ME3A LINE L1 -1095 5051 4723 218 296 131 62 chr6 149374667 149374843 -39904711 - MIR SINE MIR -20 242 55 1094 175 0 0 chr6 149375205 149375382 -39904172 + AluJb SINE Alu 136 312 0 1538 172 43 51 chr6 149376230 149376603 -39902951 + MLT1A2 LTR MaLR 1 370 -4 1454 160 37 19 chr6 149376827 149377096 -39902458 - AluJb SINE Alu 0 312 39 5533 189 53 40 chr6 149378053 149378383 -39901171 + Charlie1a DNA MER1_type 2 326 -2435 2872 95 23 32 chr6 149378383 149378815 -39900739 - MSTA LTR MaLR 0 428 1 5533 189 53 40 chr6 149378815 149379861 -39899693 + Charlie1a DNA MER1_type 326 1400 -1361 2251 103 0 7 chr6 149379861 149380162 -39899392 - AluSq SINE Alu -12 301 3 5533 189 53 40 chr6 149380162 149380211 -39899343 + Charlie1a DNA MER1_type 1400 1447 -8 702 152 66 2 chr6 149381369 149381621 -39897933 + MLT1A1 LTR MaLR 48 365 0 765 233 43 19 chr6 149382177 149382387 -39897167 + MER58C DNA MER1_type 1 215 0 198 0 0 0 chr6 149382770 149382792 -39896762 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1640 174 24 3 chr6 149382795 149383082 -39896472 - AluJb SINE Alu -19 293 1 217 309 82 0 chr6 149384957 149385067 -39894487 - MIR SINE MIR -107 155 37 232 239 0 0 chr6 149385095 149385141 -39894413 - L2 LINE L2 -2 3311 3266 22 70 0 0 chr6 149385242 149385285 -39894269 + AT_rich Low_complexity Low_complexity 1 43 0 2093 143 3 0 chr6 149385571 149385878 -39893676 + AluSx SINE Alu 4 311 -1 1836 142 3 3 chr6 149386651 149386946 -39892608 - AluJb SINE Alu -17 295 1 33 56 0 0 chr6 149387852 149387906 -39891648 + AT_rich Low_complexity Low_complexity 1 54 0 26 0 0 67 chr6 149388157 149388202 -39891352 + AT_rich Low_complexity Low_complexity 1 42 0 204 67 0 0 chr6 149388593 149388623 -39890931 + (TA)n Simple_repeat Simple_repeat 2 31 0 2320 92 3 13 chr6 149388630 149388945 -39890609 - AluSx SINE Alu 0 312 1 350 189 0 14 chr6 149388945 149389014 -39890540 - AluJ/FRAM SINE Alu -5 297 230 314 97 69 0 chr6 149389395 149389467 -39890087 + GA-rich Low_complexity Low_complexity 2 78 0 2392 87 6 10 chr6 149389595 149389907 -39889647 - AluSq SINE Alu -2 311 1 1998 144 0 3 chr6 149390632 149390937 -39888617 + AluSc SINE Alu 1 304 -5 2812 7 0 0 chr6 149391022 149391328 -39888226 - AluYa5 SINE Alu -5 306 1 208 200 17 83 chr6 149391558 149391618 -39887936 + L2 LINE L2 3211 3266 -6 405 330 85 6 chr6 149391769 149391945 -39887609 + MIR SINE MIR 48 237 -25 2203 134 3 0 chr6 149392155 149392462 -39887092 + AluSx SINE Alu 1 308 -4 750 151 0 50 chr6 149392484 149392623 -39886931 + FLAM_C SINE Alu 1 132 -1 1815 191 103 68 chr6 149392765 149393101 -39886453 - L1ME2 LINE L1 -36 6128 5805 501 86 0 0 chr6 149393101 149393171 -39886383 - L1MA2 LINE L1 -7 6297 6228 1815 191 103 68 chr6 149393171 149393466 -39886088 - L1ME2 LINE L1 -359 5805 5475 7688 242 56 45 chr6 149393477 149394301 -39885253 - L1MEc LINE L1 -605 5628 4815 3875 186 79 51 chr6 149394301 149395141 -39884413 + MER21B LTR ERV1 1 863 0 7688 242 56 45 chr6 149395141 149395169 -39884385 - L1MEc LINE L1 -1418 4815 4789 2088 146 7 0 chr6 149395169 149395464 -39884090 - AluSx SINE Alu -15 297 1 7688 242 56 45 chr6 149395464 149395754 -39883800 - L1MEc LINE L1 -1444 4789 4504 1750 187 60 25 chr6 149395754 149396107 -39883447 - MLT1A1 LTR MaLR 0 365 1 7688 242 56 45 chr6 149396107 149398778 -39880776 - L1MEc LINE L1 -1729 4504 1802 2231 107 23 7 chr6 149398778 149399086 -39880468 + AluSp SINE Alu 1 313 0 7688 242 56 45 chr6 149399086 149399483 -39880071 - L1MEc LINE L1 -4431 1802 1411 590 289 142 51 chr6 149399605 149399801 -39879753 + L1MC4a LINE L1 3544 3721 -2425 1549 177 28 28 chr6 149399801 149400109 -39879445 + AluJo SINE Alu 1 308 0 590 289 142 51 chr6 149400109 149400334 -39879220 + L1MC4a LINE L1 3721 4013 -2133 245 345 9 0 chr6 149400346 149400462 -39879092 + L1MC4a LINE L1 4076 4192 -1954 6200 93 9 9 chr6 149400476 149401388 -39878166 + L1PA10 LINE L1 5237 6151 -17 225 0 0 0 chr6 149401388 149401413 -39878141 + (CA)n Simple_repeat Simple_repeat 2 26 0 6200 93 9 9 chr6 149401413 149401424 -39878130 + L1PA10 LINE L1 6151 6160 -8 253 307 6 34 chr6 149401645 149401824 -39877730 + L1MC4a LINE L1 4381 4554 -1592 324 308 58 56 chr6 149401983 149402360 -39877194 + L1MC4a LINE L1 4861 5238 -908 1481 240 79 57 chr6 149402441 149402529 -39877025 + L1MC4a LINE L1 5320 5405 -2403 2140 121 0 22 chr6 149402529 149402842 -39876712 + AluSx SINE Alu 6 311 -1 1481 240 79 57 chr6 149402842 149403425 -39876129 + L1MC4a LINE L1 5405 6006 -1802 2181 126 17 0 chr6 149403512 149403813 -39875741 - AluSx SINE Alu -6 306 1 2100 126 0 58 chr6 149403827 149404153 -39875401 - AluSx SINE Alu -5 307 1 485 221 168 34 chr6 149405226 149405375 -39874179 + MER5A DNA MER1_type 9 177 -12 205 273 61 0 chr6 149406032 149406098 -39873456 + MIR SINE MIR 2 71 -191 2143 123 10 10 chr6 149406898 149407206 -39872348 - AluSx SINE Alu -4 308 1 550 296 36 36 chr6 149407473 149407693 -39871861 + MIR SINE MIR 5 224 -38 2019 134 7 13 chr6 149407721 149408026 -39871528 + AluJb SINE Alu 3 305 -7 207 239 0 0 chr6 149408222 149408268 -39871286 - L2 LINE L2 0 3313 3268 728 296 82 63 chr6 149408324 149408711 -39870843 - L2 LINE L2 -809 2505 2108 2246 113 0 0 chr6 149408711 149409020 -39870534 + AluSx SINE Alu 3 311 -1 728 296 82 63 chr6 149409020 149409058 -39870496 - L2 LINE L2 -1206 2108 2072 340 277 189 32 chr6 149409045 149409294 -39870260 - L3 LINE CR1 -134 1443 1156 * 910 136 0 132 chr6 149409658 149409703 -39869851 - AluJo SINE Alu -1 311 262 2245 117 0 0 chr6 149409703 149410001 -39869553 + AluSx SINE Alu 1 298 -14 910 136 0 132 chr6 149410001 149410042 -39869512 - AluJo SINE Alu -50 262 217 1931 125 30 30 chr6 149410042 149410339 -39869215 - AluSq SINE Alu -16 297 1 910 136 0 132 chr6 149410339 149410464 -39869090 - AluJo SINE Alu -95 217 127 2476 68 59 6 chr6 149411154 149411478 -39868076 + L1PA7 LINE L1 5795 6135 -19 977 70 3 45 chr6 149411486 149411774 -39867780 + (TA)n Simple_repeat Simple_repeat 1 275 0 283 347 21 0 chr6 149411781 149411876 -39867678 - MER5B DNA MER1_type -79 99 3 486 284 57 60 chr6 149412215 149412514 -39867040 + MLT1I LTR MaLR 101 398 -11 360 203 40 27 chr6 149413091 149413165 -39866389 + AluJb SINE Alu 2 60 -242 2279 119 0 0 chr6 149413165 149413475 -39866079 - AluSx SINE Alu -2 310 1 1241 212 8 4 chr6 149413540 149413781 -39865773 + AluJb SINE Alu 54 295 -17 38 68 0 0 chr6 149414019 149414092 -39865462 + AT_rich Low_complexity Low_complexity 1 73 0 1850 164 13 0 chr6 149416368 149416667 -39862887 + AluJo SINE Alu 1 303 -9 642 191 0 19 chr6 149416667 149416877 -39862677 + GA-rich Low_complexity Low_complexity 1 206 0 365 222 78 0 chr6 149420170 149420260 -39859294 + L2 LINE L2 3183 3279 -34 22 35 0 0 chr6 149420341 149420370 -39859184 + AT_rich Low_complexity Low_complexity 1 29 0 383 318 17 28 chr6 149420812 149420991 -39858563 - MER5A DNA MER1_type -6 183 7 275 241 92 92 chr6 149421313 149421454 -39858100 - MIR SINE MIR -57 205 65 1756 133 88 0 chr6 149421801 149422064 -39857490 + AluSx SINE Alu 1 286 -26 23 33 0 0 chr6 149422127 149422157 -39857397 + AT_rich Low_complexity Low_complexity 1 30 0 300 151 38 0 chr6 149422781 149422834 -39856720 + AluS SINE Alu 223 277 -23 195 0 0 79 chr6 149422839 149422877 -39856677 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1496 191 3 33 chr6 149423073 149423377 -39856177 - AluJb SINE Alu -17 295 1 207 100 0 0 chr6 149423505 149423535 -39856019 + (T)n Simple_repeat Simple_repeat 1 30 0 230 315 81 18 chr6 149423692 149423803 -39855751 - MIR SINE MIR -65 143 26 221 317 89 30 chr6 149423853 149423954 -39855600 + MIR SINE MIR 46 152 -110 2527 71 0 3 chr6 149423954 149424264 -39855290 - AluSg SINE Alu 0 310 2 438 247 0 0 chr6 149424374 149424463 -39855091 - MLT1J LTR MaLR 0 511 423 2107 126 16 7 chr6 149424463 149424772 -39854782 + AluSx SINE Alu 1 312 0 1575 134 0 4 chr6 149424976 149425207 -39854347 + AluSx SINE Alu 44 273 -39 384 22 0 0 chr6 149425216 149425261 -39854293 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 246 329 25 0 chr6 149425479 149425558 -39853996 - MIR SINE MIR -111 151 71 2118 138 0 0 chr6 149426154 149426451 -39853103 + AluJb SINE Alu 1 297 -15 492 280 67 34 chr6 149426590 149426829 -39852725 + L2 LINE L2 3030 3276 -37 23 0 0 0 chr6 149426832 149426855 -39852699 + AT_rich Low_complexity Low_complexity 1 23 0 607 251 74 122 chr6 149427178 149427879 -39851675 - L2 LINE L2 0 3313 2658 1628 176 25 11 chr6 149427902 149428186 -39851368 + AluJb SINE Alu 1 288 -24 255 182 182 50 chr6 149428213 149428312 -39851242 - L2 LINE L2 -831 2483 2372 218 209 57 114 chr6 149429241 149429264 -39850290 - MIR SINE MIR -11 251 228 1882 177 80 3 chr6 149429264 149429603 -39849951 + MLT1A1 LTR MaLR 1 365 0 218 209 57 114 chr6 149429603 149429684 -39849870 - MIR SINE MIR -34 228 153 311 272 153 37 chr6 149429916 149430184 -39849370 + L1MC4a LINE L1 5625 5923 -1885 894 181 0 0 chr6 149430476 149430609 -39848945 + FLAM_C SINE Alu 1 133 0 33 0 0 0 chr6 149430656 149430689 -39848865 + AT_rich Low_complexity Low_complexity 1 33 0 246 172 17 35 chr6 149430693 149430751 -39848803 + AluJ/FRAM SINE Alu 231 287 -15 259 361 120 10 chr6 149430946 149431154 -39848400 - MIR SINE MIR 0 262 32 2070 148 16 0 chr6 149432074 149432379 -39847175 + AluSx SINE Alu 1 310 -2 180 250 0 50 chr6 149432589 149432649 -39846905 - L3 LINE CR1 -241 1336 1280 226 249 187 0 chr6 149433726 149433816 -39845738 + MIR SINE MIR 37 140 -68 849 169 48 53 chr6 149433856 149434045 -39845509 + MER5A DNA MER1_type 2 189 0 654 235 95 10 chr6 149434162 149434362 -39845192 + L1ME4a LINE L1 5610 5826 -295 205 295 30 84 chr6 149434368 149434534 -39845020 + MER5A DNA MER1_type 1 157 -32 337 235 133 90 chr6 149434538 149434793 -39844761 + L1ME4a LINE L1 5803 6068 -53 582 154 209 0 chr6 149434888 149434998 -39844556 - AluSq/x SINE Alu -178 135 3 1985 146 76 22 chr6 149435042 149435398 -39844156 - THE1C LTR MaLR 0 375 1 434 218 183 7 chr6 149435631 149435773 -39843781 + MER45C DNA AcHobo 98 264 -689 551 212 123 41 chr6 149435814 149435984 -39843570 + MER45C DNA AcHobo 662 845 -108 527 278 28 14 chr6 149437266 149437410 -39842144 + MER115 DNA AcHobo 100 245 -448 286 180 60 0 chr6 149437595 149437645 -39841909 + Zaphod DNA AcHobo 3979 4031 0 2060 135 0 13 chr6 149437847 149438207 -39841347 + AluSx SINE Alu 1 356 0 3064 166 20 11 chr6 149438947 149439509 -39840045 - L1MB7 LINE L1 0 6184 5618 934 147 11 78 chr6 149441548 149441699 -39837855 + FRAM SINE Alu 1 132 -180 1773 104 42 0 chr6 149441699 149441939 -39837615 - AluSx SINE Alu -62 250 1 934 147 11 78 chr6 149441939 149441978 -39837576 + FRAM SINE Alu 132 172 -4 238 224 86 0 chr6 149442034 149442092 -39837462 + MLT1J2 LTR MaLR 78 140 -310 2050 109 0 51 chr6 149443007 149443318 -39836236 + AluSx SINE Alu 15 309 -3 193 367 20 20 chr6 149443379 149443477 -39836077 - MER5A DNA MER1_type -26 163 66 1289 200 4 0 chr6 149443477 149443712 -39835842 - AluJb SINE Alu -4 308 73 405 153 0 0 chr6 149443712 149443771 -39835783 + AluSp/q SINE Alu 172 230 -83 * 502 167 0 0 chr6 149443766 149443838 -39835716 - AluJb SINE Alu -239 73 2 194 135 77 19 chr6 149443907 149443959 -39835595 + MER5A DNA MER1_type 21 75 -114 * 261 236 236 0 chr6 149443951 149444040 -39835514 - MER5A DNA MER1_type -77 112 3 480 283 17 0 chr6 149444078 149444198 -39835356 - MIR SINE MIR -70 138 17 640 211 0 32 chr6 149444371 149444494 -39835060 + MER63 DNA MER1_type 1 745 -91 319 141 250 0 chr6 149445154 149445218 -39834336 + MADE1 DNA Mariner 1 80 0 1101 185 0 0 chr6 149445581 149445759 -39833795 + AluJb SINE Alu 125 302 -10 2208 125 3 0 chr6 149446149 149446460 -39833094 + AluSx SINE Alu 1 312 0 2201 135 14 46 chr6 149446560 149446908 -39832646 - MER1B DNA MER1_type 0 337 1 1859 132 0 4 chr6 149447049 149447315 -39832239 - AluSx SINE Alu -5 307 43 212 143 0 0 chr6 149447939 149447992 -39831562 + (TCTCTG)n Simple_repeat Simple_repeat 1 53 0 1156 150 21 26 chr6 149448550 149448743 -39830811 - AluJb SINE Alu -120 192 1 187 321 107 18 chr6 149449256 149449368 -39830186 + L2 LINE L2 3137 3258 -14 4509 181 54 48 chr6 149451696 149452097 -39827457 - L1MC3 LINE L1 -686 7099 6702 2321 92 3 3 chr6 149452097 149452403 -39827151 + AluSx SINE Alu 1 306 -6 4509 181 54 48 chr6 149452403 149452990 -39826564 - L1MC3 LINE L1 -1083 6702 6105 3416 152 51 47 chr6 149452988 149453406 -39826148 + L1MC3 LINE L1 7100 7515 -270 * 1938 145 3 0 chr6 149453406 149453733 -39825821 - AluSx SINE Alu 0 328 1 3416 152 51 47 chr6 149453733 149453812 -39825742 + L1MC3 LINE L1 7515 7592 -193 2336 113 0 0 chr6 149453812 149454122 -39825432 + AluSx SINE Alu 1 310 -2 3416 152 51 47 chr6 149454122 149454305 -39825249 + L1MC3 LINE L1 7592 7785 0 931 122 54 0 chr6 149454787 149454934 -39824620 - L1MB4 LINE L1 -1 6179 6025 244 186 136 0 chr6 149454939 149454998 -39824556 - L1MB4 LINE L1 -395 5785 5719 1451 191 18 32 chr6 149455054 149455331 -39824223 + AluJb SINE Alu 1 273 -39 999 257 41 95 chr6 149456037 149456120 -39823434 + Zaphod DNA AcHobo 1 87 -3944 216 0 0 0 chr6 149456120 149456144 -39823410 + (CA)n Simple_repeat Simple_repeat 1 24 0 999 257 41 95 chr6 149456144 149456318 -39823236 + Zaphod DNA AcHobo 87 230 -3801 2360 77 0 23 chr6 149456318 149456628 -39822926 + AluSc SINE Alu 5 307 -2 999 257 41 95 chr6 149456628 149456781 -39822773 + Zaphod DNA AcHobo 230 390 -3641 1748 158 39 1 chr6 149456782 149457111 -39822443 + MLT1B LTR MaLR 1 390 0 376 200 276 0 chr6 149457111 149457205 -39822349 + Zaphod DNA AcHobo 387 509 -3522 2021 269 64 42 chr6 149457226 149457869 -39821685 + MER115 DNA AcHobo 37 693 0 * 3111 194 52 18 chr6 149457869 149458690 -39820864 + Zaphod DNA AcHobo 502 1350 -2681 1349 203 17 13 chr6 149459092 149459392 -39820162 + MER33 DNA MER1_type 11 311 -13 438 265 22 154 chr6 149459605 149459841 -39819713 + L2 LINE L2 2986 3169 -103 2064 130 3 0 chr6 149459841 149460126 -39819428 - AluSx SINE Alu -18 294 9 438 265 22 154 chr6 149460126 149460213 -39819341 + L2 LINE L2 3169 3266 -6 898 249 6 0 chr6 149460367 149460544 -39819010 + MER45A DNA AcHobo 1 178 0 1296 170 52 109 chr6 149461019 149461348 -39818206 + AluJo SINE Alu 1 426 0 625 172 0 0 chr6 149461348 149461464 -39818090 + GA-rich Low_complexity Low_complexity 1 180 0 212 300 25 25 chr6 149461478 149461558 -39817996 - L2 LINE L2 -787 2527 2448 184 290 122 30 chr6 149461864 149461960 -39817594 - MIR SINE MIR -70 192 79 1698 192 0 19 chr6 149461960 149462277 -39817277 + AluJo SINE Alu 1 311 -1 184 290 122 30 chr6 149462277 149462311 -39817243 - MIR SINE MIR -183 79 50 558 211 48 116 chr6 149462649 149462900 -39816654 + L2 LINE L2 3080 3313 0 2015 138 0 0 chr6 149463583 149463913 -39815641 - AluSx SINE Alu 0 330 1 2168 109 0 0 chr6 149465082 149465419 -39814135 + AluSx SINE Alu 1 337 0 23 0 0 0 chr6 149465445 149465468 -39814086 + AT_rich Low_complexity Low_complexity 1 23 0 218 304 78 17 chr6 149465660 149465775 -39813779 - L2 LINE L2 -12 3301 3180 1570 136 11 3 chr6 149466684 149467052 -39812502 - L1MC1 LINE L1 0 6333 5902 2202 118 23 0 chr6 149467757 149468061 -39811493 - AluSp SINE Alu -2 311 1 1246 203 62 47 chr6 149468104 149468380 -39811174 - AluJo SINE Alu -32 280 1 630 208 31 0 chr6 149468698 149468828 -39810726 - MER58B DNA MER1_type -12 329 196 1912 110 0 15 chr6 149468830 149469094 -39810460 - AluSq SINE Alu -53 260 1 184 183 42 127 chr6 149469192 149469263 -39810291 - L2 LINE L2 -15 3298 3234 1023 168 0 17 chr6 149469442 149469615 -39809939 - AluJb SINE Alu -8 304 135 225 0 0 0 chr6 149469615 149469640 -39809914 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 299 197 127 14 chr6 149469649 149469720 -39809834 - AluJ/FLAM SINE Alu -210 92 14 2220 114 0 7 chr6 149469720 149470027 -39809527 - AluSx SINE Alu -5 307 3 25 0 0 0 chr6 149470031 149470056 -39809498 + AT_rich Low_complexity Low_complexity 1 25 0 1384 158 99 15 chr6 149470072 149470345 -39809209 + AluJo SINE Alu 1 296 -16 263 299 23 0 chr6 149470682 149470769 -39808785 + MIR SINE MIR 26 114 -94 1912 117 82 10 chr6 149471015 149471306 -39808248 - AluSp SINE Alu 0 313 2 847 91 91 0 chr6 149471307 149471417 -39808137 - 5S rRNA rRNA -1 120 1 324 48 0 0 chr6 149472052 149472094 -39807460 + (CA)n Simple_repeat Simple_repeat 2 43 0 343 332 62 17 chr6 149472275 149472567 -39806987 + L1 LINE L1 2284 2588 -3558 2345 103 0 10 chr6 149472567 149472877 -39806677 + AluSq SINE Alu 1 307 -6 957 196 6 0 chr6 149472892 149473050 -39806504 - FRAM SINE Alu -7 159 1 435 291 60 57 chr6 149473059 149473283 -39806271 + L1MC4a LINE L1 5607 5834 -1974 2437 70 3 3 chr6 149473283 149473583 -39805971 + AluSq SINE Alu 1 300 -13 435 291 60 57 chr6 149473583 149473657 -39805897 + L1MC4a LINE L1 5834 5906 -1902 203 264 0 0 chr6 149474324 149474377 -39805177 + A-rich Low_complexity Low_complexity 3 55 0 1369 120 39 51 chr6 149474785 149475019 -39804535 - AluJo SINE Alu -16 296 66 893 112 0 15 chr6 149475019 149475153 -39804401 + FLAM_C SINE Alu 2 133 0 244 108 27 0 chr6 149475171 149475208 -39804346 - Alu SINE Alu -86 216 179 24 32 0 0 chr6 149475522 149475553 -39804001 + AT_rich Low_complexity Low_complexity 1 31 0 538 108 0 0 chr6 149475811 149475885 -39803669 - AluJ/FRAM SINE Alu -6 306 233 1787 169 0 7 chr6 149476395 149476691 -39802863 + AluJo SINE Alu 1 294 -18 1803 160 10 20 chr6 149477375 149477669 -39801885 + AluJo SINE Alu 1 291 -21 340 295 48 85 chr6 149478821 149479116 -39800438 - L2 LINE L2 -124 3148 2865 1641 120 4 4 chr6 149479765 149480006 -39799548 + AluSg SINE Alu 64 304 -6 23 0 0 0 chr6 149481425 149481448 -39798106 + AT_rich Low_complexity Low_complexity 1 23 0 208 300 67 0 chr6 149481469 149481529 -39798025 + MIR SINE MIR 23 86 -176 1968 123 42 0 chr6 149481571 149481856 -39797698 + AluSx SINE Alu 1 297 -15 2276 110 0 25 chr6 149481995 149482314 -39797240 + AluSq SINE Alu 1 311 -2 1154 167 18 23 chr6 149482658 149482879 -39796675 - AluJo SINE Alu -92 220 1 643 203 57 0 chr6 149483217 149483340 -39796214 + FLAM_A SINE Alu 1 130 -3 2416 82 0 0 chr6 149483376 149483669 -39795885 + AluSq SINE Alu 1 293 -20 2061 95 0 7 chr6 149483680 149483965 -39795589 + L1P3 LINE L1 8 290 -6171 4148 68 14 0 chr6 149483971 149484473 -39795081 + L1PA7 LINE L1 5645 6153 -1 34 24 0 0 chr6 149484473 149484514 -39795040 + AT_rich Low_complexity Low_complexity 1 41 0 2162 96 4 0 chr6 149484783 149485111 -39794443 + AluSp SINE Alu 1 329 0 30 21 0 21 chr6 149485669 149485687 -39793867 + AT_rich Low_complexity Low_complexity 1 18 -29 998 114 0 0 chr6 149485687 149485818 -39793736 + FLAM_C SINE Alu 1 131 -2 30 21 0 21 chr6 149485818 149485847 -39793707 + AT_rich Low_complexity Low_complexity 18 47 0 2362 81 3 3 chr6 149485951 149486248 -39793306 - AluSx SINE Alu -15 297 1 2527 59 0 0 chr6 149486532 149486835 -39792719 + AluY SINE Alu 1 303 -8 724 165 74 0 chr6 149486972 149487093 -39792461 + FLAM_C SINE Alu 1 130 -3 1920 157 3 0 chr6 149487115 149487414 -39792140 + AluJb SINE Alu 13 312 0 528 286 69 30 chr6 149487768 149487971 -39791583 - MIR SINE MIR 0 262 52 2255 112 0 0 chr6 149488138 149488442 -39791112 - AluSx SINE Alu -8 304 1 319 326 10 10 chr6 149488862 149488960 -39790594 - MIR3 SINE MIR -1 207 110 217 246 70 0 chr6 149490128 149490185 -39789369 + MIR3 SINE MIR 141 201 -7 24 32 0 0 chr6 149490739 149490770 -39788784 + AT_rich Low_complexity Low_complexity 1 31 0 2105 105 7 7 chr6 149490771 149491057 -39788497 - AluSx SINE Alu -25 287 2 1975 166 0 6 chr6 149491095 149491409 -39788145 + AluSx SINE Alu 1 312 0 1722 163 18 4 chr6 149491816 149492093 -39787461 - AluJb SINE Alu -21 291 11 2018 108 7 11 chr6 149492577 149492910 -39786644 + AluSq SINE Alu 1 332 0 33 0 0 0 chr6 149492950 149492983 -39786571 + AT_rich Low_complexity Low_complexity 1 33 0 457 337 115 29 chr6 149493201 149493548 -39786006 - L3b LINE CR1 -96 1487 1111 2151 112 7 0 chr6 149493570 149493856 -39785698 - AluSq SINE Alu -25 288 1 2102 140 0 9 chr6 149494019 149494334 -39785220 - AluSx SINE Alu 0 312 1 39 22 0 0 chr6 149495439 149495485 -39784069 + AT_rich Low_complexity Low_complexity 1 46 0 2143 114 0 3 chr6 149495585 149495883 -39783671 - AluSx SINE Alu -15 297 1 2162 124 7 0 chr6 149495914 149496345 -39783209 - AluSg SINE Alu 0 433 1 2309 104 3 0 chr6 149496397 149496694 -39782860 - AluSx SINE Alu -14 298 1 1457 193 0 84 chr6 149497251 149497431 -39782123 - AluJb SINE Alu -18 294 100 2160 118 0 0 chr6 149497431 149497720 -39781834 - AluSx SINE Alu -23 289 1 1457 193 0 84 chr6 149497720 149497746 -39781808 - AluJb SINE Alu -212 100 73 1999 139 26 59 chr6 149497746 149498134 -39781420 + THE1C LTR MaLR 1 375 0 1457 193 0 84 chr6 149498134 149498247 -39781307 - AluJb SINE Alu -239 73 1 2307 58 41 0 chr6 149499322 149499613 -39779941 + AluY SINE Alu 2 304 -7 291 216 75 119 chr6 149499799 149499933 -39779621 - L2 LINE L2 0 3272 3145 2365 89 3 10 chr6 149500197 149500511 -39779043 + AluSx SINE Alu 1 312 0 502 182 25 41 chr6 149500717 149500838 -39778716 + MIR SINE MIR 100 218 -44 2266 102 3 13 chr6 149501018 149501322 -39778232 + AluSx SINE Alu 1 301 -11 1396 157 0 9 chr6 149501464 149501687 -39777867 + AluJo SINE Alu 1 221 -91 1866 148 30 10 chr6 149501731 149502034 -39777520 - AluJb SINE Alu -3 309 1 248 301 49 21 chr6 149502125 149502268 -39777286 - L1M4 LINE L1 -6395 147 1 1631 126 18 138 chr6 149502284 149502655 -39776899 - AluJb SINE Alu 0 330 1 199 245 161 56 chr6 149502733 149502876 -39776678 + MIR SINE MIR 105 262 0 2156 113 3 7 chr6 149503074 149503384 -39776170 - AluSx SINE Alu -3 309 1 2042 114 40 3 chr6 149503413 149503711 -39775843 - AluSc SINE Alu 0 309 1 2483 58 3 0 chr6 149505071 149505365 -39774189 - AluSp SINE Alu -18 295 1 210 274 185 68 chr6 149505476 149505622 -39773932 - MER5B DNA MER1_type -15 163 1 2449 84 0 0 chr6 149505816 149506114 -39773440 + AluSq SINE Alu 1 298 -15 519 271 169 12 chr6 149506478 149506499 -39773055 - L2 LINE L2 -12 3301 3285 2007 147 0 0 chr6 149506499 149506799 -39772755 + AluSx SINE Alu 1 300 -12 519 271 169 12 chr6 149506799 149507072 -39772482 - L2 LINE L2 -28 3285 2920 2166 130 0 0 chr6 149507129 149507430 -39772124 - AluSx SINE Alu -11 301 1 1558 117 0 0 chr6 149507453 149507666 -39771888 - AluSg/x SINE Alu -13 297 85 201 129 0 0 chr6 149507793 149507824 -39771730 + (CCCTAA)n Simple_repeat Simple_repeat 1 31 0 232 303 26 79 chr6 149507828 149507980 -39771574 - MIR SINE MIR -118 144 1 456 318 0 0 chr6 149508062 149508191 -39771363 + MIR3 SINE MIR 78 206 -2 24 32 0 0 chr6 149508309 149508340 -39771214 + AT_rich Low_complexity Low_complexity 1 31 0 2827 13 0 0 chr6 149508344 149508674 -39770880 - AluYa5 SINE Alu 0 330 1 2325 91 3 0 chr6 149508676 149508973 -39770581 - AluSp SINE Alu -15 298 1 2070 110 0 86 chr6 149509140 149509476 -39770078 + AluSx SINE Alu 1 307 -5 2163 109 16 16 chr6 149509716 149510027 -39769527 + AluSx SINE Alu 1 311 -1 441 293 26 0 chr6 149510031 149510147 -39769407 + L2 LINE L2 3193 3311 -2 245 310 90 0 chr6 149510266 149510366 -39769188 + MIR3 SINE MIR 97 205 -3 304 210 16 0 chr6 149510452 149510514 -39769040 - Charlie8 DNA MER1_type -999 1418 1356 25 51 0 0 chr6 149512346 149512385 -39767169 + AT_rich Low_complexity Low_complexity 1 39 0 2315 97 3 0 chr6 149512420 149512718 -39766836 - AluSx SINE Alu -13 299 1 1096 62 0 0 chr6 149512718 149512848 -39766706 - AluSq/x SINE Alu -177 136 7 2081 104 50 3 chr6 149513037 149513336 -39766218 + AluSq SINE Alu 1 313 0 2013 96 41 0 chr6 149513860 149514130 -39765424 - AluSx SINE Alu -18 294 14 780 131 49 8 chr6 149514241 149514363 -39765191 + AluJo SINE Alu 9 135 -177 467 245 82 22 chr6 149514373 149514557 -39764997 + L1MC5 LINE L1 7733 7927 -34 292 128 0 0 chr6 149514794 149514875 -39764679 - AluSp/q SINE Alu 0 326 246 2094 124 3 0 chr6 149514902 149515212 -39764342 - AluSq SINE Alu 0 311 1 595 347 25 21 chr6 149515902 149516101 -39763453 + L3 LINE CR1 1129 1331 -246 2524 54 0 13 chr6 149516101 149516414 -39763140 + AluY SINE Alu 3 311 0 595 347 25 21 chr6 149516414 149516499 -39763055 + L3 LINE CR1 1331 1414 -163 851 77 0 8 chr6 149516551 149516668 -39762886 - AluSc SINE Alu -3 306 191 189 327 0 0 chr6 149516686 149516738 -39762816 + MER5C DNA MER1_type 1 52 -272 3131 124 15 52 chr6 149517269 149517314 -39762240 - L1MB1 LINE L1 -3 6165 6120 2338 82 10 0 chr6 149517314 149517608 -39761946 - AluSx SINE Alu -15 297 1 2234 89 41 0 chr6 149517617 149517908 -39761646 - AluSg SINE Alu -7 303 1 3131 124 15 52 chr6 149517908 149518376 -39761178 - L1MB1 LINE L1 -56 6112 5661 2214 120 0 0 chr6 149518475 149518774 -39760780 + AluSx SINE Alu 1 299 -13 2202 96 0 0 chr6 149518991 149519300 -39760254 - AluSx SINE Alu 0 309 1 3134 127 8 108 chr6 149519406 149520061 -39759493 + L1PB2 LINE L1 5556 6144 -7 2280 105 7 0 chr6 149520240 149520535 -39759019 + AluSx SINE Alu 1 297 -15 222 195 0 0 chr6 149520683 149520724 -39758830 + MER91 DNA MER1_type 1 41 -155 551 200 0 0 chr6 149520792 149520887 -39758667 + MER81 DNA DNA 1 95 -19 2492 70 0 3 chr6 149521196 149521508 -39758046 - AluY SINE Alu 0 311 1 2294 123 0 0 chr6 149521557 149521867 -39757687 - AluSx SINE Alu -2 310 1 479 211 0 0 chr6 149521937 149522032 -39757522 + U13 snRNA snRNA 1 95 -9 189 0 0 0 chr6 149522058 149522079 -39757475 + (TA)n Simple_repeat Simple_repeat 1 21 0 608 86 11 32 chr6 149523310 149523403 -39756151 + MER41B LTR ERV1 456 546 -89 549 125 18 18 chr6 149523403 149523515 -39756039 + GA-rich Low_complexity Low_complexity 1 112 0 2243 117 0 0 chr6 149523565 149523864 -39755690 + AluSq SINE Alu 1 299 -14 525 98 12 37 chr6 149523928 149524010 -39755544 - AluJ/FRAM SINE Alu -9 303 224 414 0 0 0 chr6 149524151 149524197 -39755357 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1857 255 72 47 chr6 149524197 149524333 -39755221 - L1MEc LINE L1 -3559 2656 2525 2263 105 0 16 chr6 149524333 149524637 -39754917 - AluSp SINE Alu -14 299 1 1857 255 72 47 chr6 149524637 149525153 -39754401 - L1MEc LINE L1 -3690 2525 2023 2160 128 3 0 chr6 149525153 149525457 -39754097 - AluSx SINE Alu -7 305 1 1857 255 72 47 chr6 149525457 149525739 -39753815 - L1MEc LINE L1 -4192 2023 1750 2180 113 9 28 chr6 149525739 149526057 -39753497 - AluSx SINE Alu 0 312 1 1857 255 72 47 chr6 149526057 149526385 -39753169 - L1MEc LINE L1 -4465 1750 1402 2357 104 0 0 chr6 149526757 149527056 -39752498 + AluSx SINE Alu 1 299 -13 2443 83 0 6 chr6 149527059 149527372 -39752182 + AluY SINE Alu 1 311 0 2034 128 10 3 chr6 149527499 149527796 -39751758 - AluJb SINE Alu -13 299 1 225 262 97 48 chr6 149528064 149528167 -39751387 - L1ME4a LINE L1 0 6121 6014 1445 117 0 68 chr6 149528775 149528838 -39750716 - L1PA14 LINE L1 -2 6159 6093 2291 112 0 0 chr6 149528838 149529143 -39750411 - AluSx SINE Alu -7 305 1 1445 117 0 68 chr6 149529143 149529328 -39750226 - L1PA14 LINE L1 -68 6093 5928 898 171 0 0 chr6 149529369 149529515 -39750039 + FRAM SINE Alu 1 145 -31 207 114 0 0 chr6 149529518 149529553 -39750001 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 509 145 0 0 chr6 149529590 149529659 -39749895 + FRAM/FAM SINE Alu 9 77 -99 294 125 0 0 chr6 149529673 149529721 -39749833 + (A)n Simple_repeat Simple_repeat 1 48 0 2087 108 11 14 chr6 149530490 149530867 -39748687 - AluSx SINE Alu 0 376 1 2011 154 0 0 chr6 149531175 149531460 -39748094 - AluJb SINE Alu -27 285 1 228 313 36 12 chr6 149531824 149531907 -39747647 + MIR SINE MIR 14 98 -164 194 0 39 0 chr6 149531907 149531933 -39747621 + (TTA)n Simple_repeat Simple_repeat 2 28 0 729 128 0 106 chr6 149531959 149532045 -39747509 - FLAM_A SINE Alu -173 138 71 902 118 0 52 chr6 149532045 149532180 -39747374 + FLAM_C SINE Alu 1 128 -5 729 128 0 106 chr6 149532180 149532234 -39747320 - FLAM_A SINE Alu -240 71 13 390 285 48 12 chr6 149532238 149532403 -39747151 + MIR SINE MIR 92 262 0 983 202 105 43 chr6 149533568 149533588 -39745966 - MER57A LTR ERV1 0 403 386 2377 84 0 13 chr6 149533588 149533896 -39745658 + AluSx SINE Alu 1 304 -8 983 202 105 43 chr6 149533896 149534177 -39745377 - MER57A LTR ERV1 -17 386 115 1816 165 14 35 chr6 149534208 149534554 -39745000 + MER6A DNA MER2_type 41 379 -226 189 0 0 0 chr6 149534554 149534575 -39744979 + (TCCCC)n Simple_repeat Simple_repeat 5 25 0 1083 68 8 0 chr6 149534681 149534813 -39744741 - AluSq/x SINE Alu -179 133 1 2539 56 0 0 chr6 149535097 149535400 -39744154 + AluY SINE Alu 1 303 -8 724 165 74 0 chr6 149535537 149535658 -39743896 + FLAM_C SINE Alu 1 130 -3 1790 168 3 0 chr6 149535680 149535966 -39743588 + AluJb SINE Alu 13 299 -13 528 286 69 30 chr6 149536314 149536517 -39743037 - MIR SINE MIR 0 262 52 2195 119 0 0 chr6 149536684 149536986 -39742568 - AluSx SINE Alu -10 302 1 319 326 10 10 chr6 149537406 149537504 -39742050 - MIR3 SINE MIR -1 207 110 217 246 70 0 chr6 149538671 149538728 -39740826 + MIR3 SINE MIR 141 201 -7 24 32 0 0 chr6 149539282 149539313 -39740241 + AT_rich Low_complexity Low_complexity 1 31 0 2167 91 7 7 chr6 149539314 149539601 -39739953 - AluSx SINE Alu -25 287 1 249 132 0 0 chr6 149539672 149539710 -39739844 + MIR SINE MIR 108 145 -63 2438 147 43 89 chr6 149539804 149539836 -39739718 - LTR54 LTR ERV1 0 510 478 1966 128 13 20 chr6 149539836 149540134 -39739420 - AluSx SINE Alu -16 296 1 2438 147 43 89 chr6 149540134 149540631 -39738923 - LTR54 LTR ERV1 -32 478 5 283 284 53 21 chr6 149540956 149541051 -39738503 - L2 LINE L2 0 3313 3216 250 338 108 31 chr6 149541046 149541268 -39738286 - L2 LINE L2 -348 2966 2728 * 367 148 16 0 chr6 149541489 149541550 -39738004 - MER51A LTR ERV1 -90 544 483 285 29 0 0 chr6 149541553 149541587 -39737967 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1485 151 0 44 chr6 149541589 149541738 -39737816 - AluJo SINE Alu -30 282 147 2304 104 3 7 chr6 149541738 149542046 -39737508 - AluSq SINE Alu -6 307 1 1485 151 0 44 chr6 149542046 149542147 -39737407 - AluJo SINE Alu -165 147 43 1548 187 19 16 chr6 149542185 149542500 -39737054 + MER33 DNA MER1_type 8 323 -1 203 244 22 0 chr6 149543516 149543561 -39735993 + L2 LINE L2 2868 2913 -400 947 160 11 37 chr6 149543950 149544138 -39735416 + LTR64 LTR ERVK 1 183 -375 30 0 0 0 chr6 149544300 149544330 -39735224 + AT_rich Low_complexity Low_complexity 1 30 0 1070 199 10 82 chr6 149544541 149544642 -39734912 + LTR64 LTR ERVK 1 108 -450 1666 165 79 0 chr6 149544642 149544921 -39734633 + AluSx SINE Alu 1 301 -11 1070 199 10 82 chr6 149544921 149545110 -39734444 + LTR64 LTR ERVK 108 270 -288 2161 52 62 14 chr6 149545147 149545435 -39734119 + AluY SINE Alu 1 302 -9 1141 150 9 33 chr6 149545442 149545676 -39733878 - AluJb SINE Alu -21 291 1 853 228 123 26 chr6 149545676 149545943 -39733611 + LTR64 LTR ERVK 266 558 0 4539 91 10 55 chr6 149546167 149546417 -39733137 + L1PB2 LINE L1 5281 5541 -610 2200 88 0 59 chr6 149546417 149546737 -39732817 - AluSx SINE Alu -11 301 1 4539 91 10 55 chr6 149546737 149547130 -39732424 + L1PB2 LINE L1 5541 5890 -261 2034 156 7 0 chr6 149547130 149547438 -39732116 + AluSx SINE Alu 1 310 -2 4539 91 10 55 chr6 149547438 149547519 -39732035 + L1PB2 LINE L1 5890 5973 -178 2054 132 3 10 chr6 149547519 149547829 -39731725 + AluSx SINE Alu 1 308 -4 1916 125 6 83 chr6 149548011 149548348 -39731206 - AluJb SINE Alu -1 311 1 2193 128 0 0 chr6 149548409 149548705 -39730849 - AluSx SINE Alu -16 296 1 813 81 0 0 chr6 149548722 149548821 -39730733 - HY3 scRNA scRNA -1 100 2 236 328 0 0 chr6 149548912 149548979 -39730575 - L3 LINE CR1 -295 1282 1216 1229 161 82 50 chr6 149548998 149549240 -39730314 - MLT2C1 LTR ERVL 0 397 143 2284 94 3 3 chr6 149549240 149549539 -39730015 - AluSx SINE Alu -9 303 5 1229 161 82 50 chr6 149549539 149549575 -39729979 - MLT2C1 LTR ERVL -254 143 110 182 265 73 15 chr6 149549595 149549663 -39729891 - L3 LINE CR1 -410 1167 1096 354 128 0 0 chr6 149549673 149549749 -39729805 + Alu SINE Alu 237 312 0 315 340 88 0 chr6 149549768 149549962 -39729592 - L3 LINE CR1 -502 1075 865 1583 184 44 3 chr6 149550108 149550401 -39729153 + AluJo SINE Alu 1 305 -7 270 347 41 0 chr6 149550565 149550663 -39728891 - MIR SINE MIR -123 139 38 2139 116 7 7 chr6 149550827 149551129 -39728425 - AluSx SINE Alu -10 302 1 181 283 17 33 chr6 149551180 149551240 -39728314 - L2 LINE L2 -4 3268 3210 931 142 0 15 chr6 149551336 149551470 -39728084 + FLAM_C SINE Alu 1 132 -1 1757 169 0 35 chr6 149551695 149552009 -39727545 - AluJo SINE Alu -9 303 1 1981 145 3 0 chr6 149552452 149552765 -39726789 - AluSx SINE Alu 0 314 1 689 244 47 0 chr6 149552766 149552893 -39726661 - AluJo SINE Alu -89 223 91 301 319 148 15 chr6 149553829 149553964 -39725590 - MIR3 SINE MIR -19 189 37 1726 113 68 11 chr6 149604593 149604898 -39674656 + AluSx SINE Alu 1 320 0 1159 107 0 0 chr6 149604898 149605084 -39674470 + AluSp SINE Alu 133 318 0 189 171 0 0 chr6 149605193 149605228 -39674326 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 444 340 35 7 chr6 149605236 149605377 -39674177 - L2 LINE L2 -10 3262 3118 3380 125 23 18 chr6 149605556 149606117 -39673437 + L1PA16 LINE L1 5586 6149 -17 26 0 0 0 chr6 149606514 149606540 -39673014 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr6 149607289 149607310 -39672244 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 149608727 149608757 -39670797 + AT_rich Low_complexity Low_complexity 1 30 0 253 326 163 0 chr6 149608757 149608849 -39670705 + L3 LINE CR1 1468 1574 -3 2139 112 24 3 chr6 149608860 149609156 -39670398 + AluSx SINE Alu 1 302 -10 1842 163 122 13 chr6 149609217 149609603 -39669951 + Tigger2a DNA MER2_type 7 434 0 409 357 36 74 chr6 149609705 149610122 -39669432 - L2 LINE L2 -36 3236 2836 2215 109 0 0 chr6 149610681 149610988 -39668566 + AluSx SINE Alu 1 307 0 4421 207 30 29 chr6 149611351 149612388 -39667166 - MER45B DNA AcHobo 0 1040 3 7366 25 0 0 chr6 149612422 149613321 -39666233 - L1PA4 LINE L1 -3 6152 5254 553 322 16 43 chr6 149615163 149615421 -39664133 - MIR SINE MIR -10 252 2 22 99 0 0 chr6 149616564 149616635 -39662919 + AT_rich Low_complexity Low_complexity 1 71 0 313 268 0 0 chr6 149618083 149618154 -39661400 + L1MD2 LINE L1 5526 5596 -2212 844 200 83 69 chr6 149618167 149618478 -39661076 + L1MCc LINE L1 1 669 -5753 3287 201 74 58 chr6 149618491 149619377 -39660177 + L1MCc LINE L1 1100 1971 -4970 1992 143 0 0 chr6 149619377 149619687 -39659867 + AluJo SINE Alu 3 312 0 3287 201 74 58 chr6 149619687 149619839 -39659715 + L1MCc LINE L1 1971 2119 -4822 1837 164 3 3 chr6 149619839 149620145 -39659409 - AluSx SINE Alu 0 306 1 3287 201 74 58 chr6 149620145 149620316 -39659238 + L1MCc LINE L1 2119 2342 -4599 1640 282 35 20 chr6 149620370 149620881 -39658673 - MER69 DNA AcHobo -707 519 1 2351 206 29 0 chr6 149620922 149621464 -39658090 - L1MC/D LINE L1 -630 5729 5176 2538 195 92 14 chr6 149621498 149622062 -39657492 + L1MD2 LINE L1 5730 6337 -22 1525 255 42 3 chr6 149622281 149622811 -39656743 + L1MCc LINE L1 2897 3403 -3538 230 387 8 16 chr6 149623607 149623731 -39655823 + MIR SINE MIR 73 195 -67 1164 182 5 5 chr6 149623755 149623964 -39655590 + MER3 DNA MER1_type 1 209 0 2683 108 11 0 chr6 149625495 149625866 -39653688 + THE1C LTR MaLR 1 375 0 3412 107 32 4 chr6 149626362 149626717 -39652837 - L1PB1 LINE L1 0 6151 5775 605 58 0 11 chr6 149626717 149626804 -39652750 + (TA)n Simple_repeat Simple_repeat 2 87 0 3412 107 32 4 chr6 149626804 149626979 -39652575 - L1PB1 LINE L1 -376 5775 5606 2479 83 32 3 chr6 149628315 149628663 -39650891 - L1PB2 LINE L1 -2 6149 5792 360 0 0 0 chr6 149629402 149629442 -39650112 + (CA)n Simple_repeat Simple_repeat 2 41 0 370 328 36 104 chr6 149629487 149629737 -39649817 + L2 LINE L2 3040 3272 0 31 26 0 0 chr6 149630701 149630739 -39648815 + AT_rich Low_complexity Low_complexity 1 38 0 29 28 0 0 chr6 149631033 149631069 -39648485 + AT_rich Low_complexity Low_complexity 1 36 0 2312 107 3 0 chr6 149631130 149631440 -39648114 + AluSp SINE Alu 1 311 -2 322 250 0 0 chr6 149632258 149632326 -39647228 - MIR SINE MIR -97 165 98 407 334 152 18 chr6 149632738 149633126 -39646428 - L3 LINE CR1 -220 1363 921 14601 187 24 7 chr6 149635354 149639953 -39639601 + L1PB1 LINE L1 1495 6143 -8 188 256 0 26 chr6 149640501 149640540 -39639014 - L2 LINE L2 -17 3255 3218 549 303 128 34 chr6 149640603 149640900 -39638654 + MER115 DNA AcHobo 112 436 -257 32 0 0 0 chr6 149640977 149641009 -39638545 + AT_rich Low_complexity Low_complexity 1 32 0 1426 175 13 84 chr6 149641171 149641512 -39638042 - AluJo SINE Alu 0 319 1 272 325 138 31 chr6 149641951 149642111 -39637443 - L2 LINE L2 -557 2757 2581 320 125 0 0 chr6 149642151 149642199 -39637355 + L2 LINE L2 3265 3312 -1 473 315 39 17 chr6 149642425 149642603 -39636951 - MER5A DNA MER1_type -1 188 7 494 256 137 26 chr6 149642670 149642904 -39636650 - MIR SINE MIR 0 262 3 207 307 23 23 chr6 149644742 149644830 -39634724 + CT-rich Low_complexity Low_complexity 5 92 0 1454 190 75 52 chr6 149645287 149645554 -39634000 + L1MDa LINE L1 2221 2480 -4060 201 94 0 0 chr6 149645554 149645586 -39633968 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1454 190 75 52 chr6 149645586 149646059 -39633495 + L1MDa LINE L1 2480 2981 -3559 281 240 186 49 chr6 149646110 149646314 -39633240 - L2 LINE L2 -904 2410 2179 6208 76 55 0 chr6 149646411 149647962 -39631592 + L1PA8 LINE L1 4583 6172 0 2214 111 0 3 chr6 149648040 149648338 -39631216 + AluSq SINE Alu 1 297 -16 359 333 13 40 chr6 149648338 149648520 -39631034 - L2 LINE L2 -1384 1930 1754 1376 88 19 28 chr6 149648520 149648736 -39630818 + L1MA2 LINE L1 6086 6299 -5 359 333 13 40 chr6 149648736 149648778 -39630776 - L2 LINE L2 -1560 1754 1712 219 250 0 0 chr6 149648833 149648893 -39630661 + T-rich Low_complexity Low_complexity 1 60 0 24 77 0 0 chr6 149649265 149649317 -39630237 + AT_rich Low_complexity Low_complexity 1 52 0 925 199 13 76 chr6 149649336 149649572 -39629982 - AluJo SINE Alu -5 307 87 301 260 41 48 chr6 149649677 149649823 -39629731 - MLT1K LTR MaLR -16 572 428 204 250 0 44 chr6 149651042 149651110 -39628444 + (TTTA)n Simple_repeat Simple_repeat 3 67 0 253 305 235 15 chr6 149651386 149651586 -39627968 - MIR SINE MIR 0 262 19 2060 127 0 0 chr6 149652898 149653213 -39626341 + AluSq SINE Alu 1 315 0 732 252 60 30 chr6 149653260 149653494 -39626060 - MIR SINE MIR -8 254 14 24 53 0 0 chr6 149653513 149653551 -39626003 + AT_rich Low_complexity Low_complexity 1 38 0 2344 82 0 0 chr6 149653693 149653986 -39625568 - AluY SINE Alu -18 293 1 448 281 124 32 chr6 149654054 149654336 -39625218 - L1M4 LINE L1 -2828 3318 3063 2129 115 3 7 chr6 149654336 149654632 -39624922 - AluSg SINE Alu -15 295 1 448 281 124 32 chr6 149654632 149654912 -39624642 - L1M4 LINE L1 -3083 3063 2704 1926 145 0 33 chr6 149654912 149655216 -39624338 - AluSg SINE Alu -16 294 1 263 220 20 70 chr6 149655290 149655390 -39624164 - L1MEd LINE L1 -5964 155 61 2271 62 69 0 chr6 149656917 149657208 -39622346 - AluY SINE Alu 0 311 1 2158 106 10 3 chr6 149658525 149658827 -39620727 - AluSg SINE Alu -6 304 1 259 235 20 31 chr6 149658907 149659005 -39620549 + (TATATG)n Simple_repeat Simple_repeat 1 97 0 570 82 22 67 chr6 149659006 149659724 -39619830 + (TA)n Simple_repeat Simple_repeat 1 686 0 236 282 125 19 chr6 149659870 149660086 -39619468 - L1ME4a LINE L1 -178 5943 5705 188 298 124 50 chr6 149661934 149662055 -39617499 + L2 LINE L2 3125 3254 -18 355 139 13 63 chr6 149662328 149662407 -39617147 + MER5B DNA MER1_type 26 100 -78 2378 109 0 0 chr6 149662408 149662819 -39616735 + AluSx SINE Alu 1 411 0 246 247 12 62 chr6 149662819 149662900 -39616654 + MER5B DNA MER1_type 92 168 -10 1522 118 1 5 chr6 149663329 149663565 -39615989 - L1M1 LINE L1 -744 5402 5317 294 29 0 0 chr6 149663578 149663613 -39615941 + (TGG)n Simple_repeat Simple_repeat 3 37 0 931 152 85 0 chr6 149663613 149663768 -39615786 - AluSg/x SINE Alu -7 303 132 366 203 14 0 chr6 149663809 149663878 -39615676 - AluY SINE Alu -138 163 94 259 320 107 16 chr6 149664046 149664168 -39615386 - L2 LINE L2 -23 3249 3117 2229 128 0 0 chr6 149664991 149665303 -39614251 - AluSx SINE Alu 0 312 1 3255 81 37 29 chr6 149665474 149665990 -39613564 - L1MA3 LINE L1 0 7724 7205 219 229 0 33 chr6 149666009 149666070 -39613484 + (TA)n Simple_repeat Simple_repeat 2 60 0 9896 150 25 30 chr6 149666071 149667524 -39612030 - L1MA3 LINE L1 -512 7212 5753 2259 108 0 3 chr6 149667524 149667820 -39611734 - AluSg SINE Alu -15 295 1 9896 150 25 30 chr6 149667820 149668876 -39610678 - L1MA3 LINE L1 -1971 5753 4725 1666 110 0 0 chr6 149668876 149669094 -39610460 - AluSg/x SINE Alu -17 293 76 9896 150 25 30 chr6 149669094 149669148 -39610406 - L1MA3 LINE L1 -2999 4725 4672 1387 93 5 10 chr6 149669256 149669449 -39610105 + AluY SINE Alu 110 301 -10 3856 204 26 35 chr6 149669449 149670486 -39609068 - L1MA3 LINE L1 -2910 4655 3628 1144 84 0 19 chr6 149670488 149670642 -39608912 - AluY SINE Alu -4 307 157 2221 76 0 7 chr6 149670664 149670939 -39608615 + AluY SINE Alu 24 296 -15 18845 118 43 15 chr6 149670939 149672066 -39607488 - L1MA3 LINE L1 -4383 3182 2088 2350 116 3 0 chr6 149672066 149672376 -39607178 - AluSq SINE Alu -2 311 1 18845 118 43 15 chr6 149672376 149674327 -39605227 - L1MA3 LINE L1 -5477 2088 17 2160 127 3 0 chr6 149675510 149675802 -39603752 + AluSx SINE Alu 1 293 -19 226 366 70 57 chr6 149676455 149676682 -39602872 - L2 LINE L2 -62 3210 2981 1795 128 0 0 chr6 149676871 149677120 -39602434 - AluSg SINE Alu -6 304 56 363 281 61 41 chr6 149677203 149677399 -39602155 + L2 LINE L2 3099 3298 -15 228 200 0 0 chr6 149678286 149678336 -39601218 + (TA)n Simple_repeat Simple_repeat 1 50 0 213 154 0 0 chr6 149678850 149678889 -39600665 + CT-rich Low_complexity Low_complexity 3 41 0 23 33 0 0 chr6 149680089 149680119 -39599435 + AT_rich Low_complexity Low_complexity 1 30 0 347 295 35 75 chr6 149680700 149680927 -39598627 - L3 LINE CR1 -3 1574 1357 180 333 39 0 chr6 149681211 149681289 -39598265 - L3 LINE CR1 -334 1243 1163 586 156 0 0 chr6 149681289 149681379 -39598175 + AluSg SINE Alu 1 90 -220 218 321 57 0 chr6 149681405 149681458 -39598096 + MER91A DNA MER1_type 122 177 -19 213 224 20 0 chr6 149681634 149681683 -39597871 + L3 LINE CR1 1525 1574 -3 1710 89 0 0 chr6 149681743 149681956 -39597598 + AluSg SINE Alu 90 302 -10 216 297 0 15 chr6 149682196 149682296 -39597258 - MER91A DNA MER1_type -19 171 24 457 259 95 6 chr6 149682331 149682489 -39597065 - L3 LINE CR1 -707 870 699 195 146 0 0 chr6 149682936 149682977 -39596577 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 610 299 0 36 chr6 149683946 149684140 -39595414 - MIR SINE MIR -25 237 51 599 250 157 60 chr6 149684560 149684926 -39594628 - L1ME3 LINE L1 -305 5857 5435 2386 91 0 0 chr6 149684926 149685223 -39594331 + AluSg SINE Alu 1 297 -13 599 250 157 60 chr6 149685223 149685320 -39594234 - L1ME3 LINE L1 -727 5435 5349 3480 138 8 12 chr6 149686161 149686743 -39592811 - MER50 LTR ERV1 -30 704 125 468 56 127 0 chr6 149686743 149686814 -39592740 + MADE1 DNA Mariner 1 80 0 * 552 181 52 0 chr6 149686814 149686924 -39592630 - MER50 LTR ERV1 -608 126 11 332 347 26 49 chr6 149687569 149687834 -39591720 + L1ME LINE L1 5008 5266 -880 22 0 0 0 chr6 149687834 149687856 -39591698 + AT_rich Low_complexity Low_complexity 1 22 0 845 257 20 82 chr6 149687859 149688299 -39591255 + L1ME LINE L1 5292 5704 -466 563 121 11 0 chr6 149688319 149688410 -39591144 - THE1C LTR MaLR 0 375 284 2426 69 0 3 chr6 149688410 149688701 -39590853 + AluSx SINE Alu 13 302 -10 2268 119 3 3 chr6 149688708 149689018 -39590536 - AluSq SINE Alu -3 310 1 1732 74 0 0 chr6 149689386 149689603 -39589951 + AluY SINE Alu 2 218 -93 1917 135 0 10 chr6 149689703 149689999 -39589555 - AluSq SINE Alu -20 293 1 227 333 50 6 chr6 149690141 149690321 -39589233 - L1ME3 LINE L1 -1092 5054 4867 2083 91 14 11 chr6 149690421 149690696 -39588858 + AluSx SINE Alu 11 286 -26 306 0 0 0 chr6 149690700 149690734 -39588820 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 2338 101 0 0 chr6 149691345 149691651 -39587903 - AluSx SINE Alu -4 308 3 304 339 32 16 chr6 149691792 149691916 -39587638 - L3 LINE CR1 -23 1554 1429 209 414 17 9 chr6 149693492 149693608 -39585946 + MIR SINE MIR 19 135 -73 558 330 36 10 chr6 149694125 149694319 -39585235 - MIR SINE MIR -48 214 16 274 161 54 0 chr6 149694365 149694421 -39585133 + MIR SINE MIR 109 167 -95 252 248 95 48 chr6 149695793 149695898 -39583656 + MIR SINE MIR 143 252 -10 876 267 45 9 chr6 149696707 149696928 -39582626 - MIR SINE MIR -21 241 13 304 207 207 89 chr6 149698020 149698155 -39581399 + MER5B DNA MER1_type 27 177 -1 2444 219 49 0 chr6 149698686 149699233 -39580321 + MER90 LTR ERV1 2 575 0 194 364 26 32 chr6 149700305 149700459 -39579095 + L2 LINE L2 2305 2457 -857 1549 133 0 0 chr6 149700876 149701124 -39578430 - L1MA2 LINE L1 0 6304 6057 301 288 11 1 chr6 149701182 149701281 -39578273 - MIR SINE MIR -41 167 68 2090 103 0 48 chr6 149701574 149701884 -39577670 + AluSq SINE Alu 1 295 -18 189 321 36 24 chr6 149702101 149702185 -39577369 - L2 LINE L2 -398 2915 2831 2381 83 0 0 chr6 149703066 149703366 -39576188 + AluY SINE Alu 1 300 -11 230 348 110 19 chr6 149703863 149704018 -39575536 - L2 LINE L2 -931 2383 2215 1038 79 0 0 chr6 149704065 149704192 -39575362 + AluSq/x SINE Alu 1 127 -185 483 97 0 0 chr6 149704193 149704265 -39575289 + AluSp/q SINE Alu 234 305 -8 568 235 130 12 chr6 149704315 149704477 -39575077 - MER5A DNA MER1_type 0 189 9 4196 134 18 16 chr6 149704654 149705414 -39574140 - Ricksha DNA DNA -13 3238 2477 6444 142 9 14 chr6 149705414 149706480 -39573074 - Ricksha DNA DNA -1247 1999 938 2426 122 61 16 chr6 149706480 149706906 -39572648 + MER65A LTR ERV1 1 445 0 6444 142 9 14 chr6 149706906 149706939 -39572615 - Ricksha DNA DNA -2308 938 906 1487 176 228 41 chr6 149706940 149707400 -39572154 - MLT2B3 LTR ERVL 0 554 9 1056 143 0 19 chr6 149707406 149707560 -39571994 + AluJb SINE Alu 148 298 -14 305 262 49 33 chr6 149708484 149708606 -39570948 - L1MC/D LINE L1 -2243 5542 5419 1645 191 17 11 chr6 149709258 149709615 -39569939 - MLT1A1 LTR MaLR 0 365 7 189 0 0 0 chr6 149709824 149709845 -39569709 + (A)n Simple_repeat Simple_repeat 1 21 0 2205 107 3 7 chr6 149710394 149710692 -39568862 - AluSg SINE Alu 0 310 14 226 333 0 25 chr6 149711012 149711093 -39568461 - MIR3 SINE MIR -116 92 14 817 86 17 0 chr6 149711297 149711413 -39568141 + L1PA7 LINE L1 6037 6154 0 2058 162 22 3 chr6 149711625 149711984 -39567570 + MER47A DNA MER2_type 1 366 0 2167 121 3 13 chr6 149714308 149714623 -39564931 + AluSx SINE Alu 1 312 0 332 250 52 0 chr6 149714627 149714723 -39564831 + MER103 DNA DNA 3 103 -63 295 153 56 0 chr6 149715862 149715934 -39563620 + (TATG)n Simple_repeat Simple_repeat 4 79 0 595 271 36 109 chr6 149715945 149716365 -39563189 - L1MC4a LINE L1 -1911 5897 5509 274 254 78 63 chr6 149716414 149716556 -39562998 - L1MC4a LINE L1 -1371 4775 4632 5945 72 11 27 chr6 149717208 149717585 -39561969 - L1PB1 LINE L1 -5 6146 5765 2262 122 3 0 chr6 149717585 149717896 -39561658 - AluSx SINE Alu 0 312 1 5945 72 11 27 chr6 149717896 149718346 -39561208 - L1PB1 LINE L1 -386 5765 5332 346 280 71 55 chr6 149719526 149719581 -39559973 - MIR SINE MIR -17 245 192 3148 57 3 0 chr6 149719581 149719951 -39559603 - L1PA7 LINE L1 -4 6150 5780 346 280 71 55 chr6 149719951 149720077 -39559477 - MIR SINE MIR -70 192 61 2186 104 3 26 chr6 149720313 149720621 -39558933 + AluSg SINE Alu 1 301 -9 2027 151 13 0 chr6 149721382 149721687 -39557867 - AluSx SINE Alu -3 309 1 326 257 93 50 chr6 149721688 149721828 -39557726 + L2 LINE L2 3168 3313 0 26 0 0 0 chr6 149721877 149721903 -39557651 + AT_rich Low_complexity Low_complexity 1 26 0 1961 152 0 7 chr6 149721938 149722234 -39557320 - AluSx SINE Alu -18 294 1 568 224 112 19 chr6 149722344 149722505 -39557049 + MIR SINE MIR 77 252 -10 204 280 30 50 chr6 149722577 149722677 -39556877 + MIR3 SINE MIR 93 190 -18 2162 99 7 3 chr6 149722688 149723008 -39556546 + AluSx SINE Alu 3 323 0 430 288 86 60 chr6 149723419 149723686 -39555868 - MLT1J LTR MaLR -8 503 230 2332 46 3 7 chr6 149723789 149724113 -39555441 + AluY SINE Alu 1 323 0 417 220 0 40 chr6 149726108 149726208 -39553346 + MLT1J1 LTR MaLR 65 160 -286 28 48 0 0 chr6 149726264 149726306 -39553248 + AT_rich Low_complexity Low_complexity 1 42 0 1759 185 0 0 chr6 149726316 149726614 -39552940 + AluJo SINE Alu 1 298 -14 419 248 73 9 chr6 149727051 149727160 -39552394 - L2 LINE L2 -5 3308 3193 2410 83 3 7 chr6 149727410 149727712 -39551842 - AluSg SINE Alu -9 301 1 2715 150 34 0 chr6 149727840 149728254 -39551300 + MSTA LTR MaLR 1 428 0 2025 129 20 0 chr6 149728334 149728636 -39550918 + AluSx SINE Alu 3 310 -2 307 306 30 52 chr6 149729925 149730059 -39549495 - MIR SINE MIR -112 150 20 1714 175 7 0 chr6 149730393 149730678 -39548876 + AluJo SINE Alu 5 291 -21 2139 123 0 7 chr6 149731542 149731842 -39547712 + AluSx SINE Alu 1 298 -14 368 248 263 8 chr6 149731849 149731982 -39547572 + MER5A DNA MER1_type 23 189 0 198 0 0 0 chr6 149732239 149732261 -39547293 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2031 125 0 3 chr6 149732504 149732799 -39546755 + AluSx SINE Alu 5 298 -14 2259 171 20 0 chr6 149733102 149733494 -39546060 - MER57A LTR ERV1 -3 400 1 2165 122 0 0 chr6 149733703 149733999 -39545555 + AluSx SINE Alu 1 296 -16 2215 100 10 13 chr6 149734363 149734673 -39544881 - AluSq SINE Alu -4 309 1 237 356 51 40 chr6 149735384 149735561 -39543993 - MIR SINE MIR -49 213 35 272 250 162 8 chr6 149735869 149735993 -39543561 - MIR SINE MIR -66 196 47 5022 76 58 9 chr6 149735995 149736665 -39542889 - L1PA11 LINE L1 -2 6172 5470 219 114 0 0 chr6 149738740 149738775 -39540779 + (TG)n Simple_repeat Simple_repeat 1 35 0 199 296 161 0 chr6 149738945 149739026 -39540528 - MIR SINE MIR -1 261 168 242 256 90 13 chr6 149740677 149740755 -39538799 - L2 LINE L2 -4 3309 3226 21 36 0 0 chr6 149741273 149741301 -39538253 + AT_rich Low_complexity Low_complexity 1 28 0 1915 139 52 85 chr6 149741354 149741742 -39537812 + THE1C LTR MaLR 1 375 0 657 310 47 41 chr6 149742076 149742441 -39537113 - ERVL LTR ERVL -519 5245 4879 573 310 61 11 chr6 149742556 149742817 -39536737 - ERVL LTR ERVL -1028 4736 4463 2371 100 0 3 chr6 149742886 149743197 -39536357 + AluSx SINE Alu 1 310 -2 1282 318 72 12 chr6 149743555 149744206 -39535348 - ERVL LTR ERVL -2901 2863 2174 1787 161 111 57 chr6 149745197 149745545 -39534009 + MSTB LTR MaLR 1 329 -97 1830 159 0 3 chr6 149745545 149745828 -39533726 - AluJb SINE Alu 0 312 31 1787 161 111 57 chr6 149745828 149745840 -39533714 + MSTB LTR MaLR 329 339 -87 2305 83 0 0 chr6 149745840 149746129 -39533425 - AluSx SINE Alu -19 293 5 1787 161 111 57 chr6 149746129 149746171 -39533383 + MSTB LTR MaLR 339 426 0 379 329 40 53 chr6 149747473 149747741 -39531813 + L2 LINE L2 2776 3049 -223 241 247 93 0 chr6 149747748 149747845 -39531709 + L1ME LINE L1 4578 4683 -1463 698 269 33 17 chr6 149747908 149748092 -39531462 + L1ME LINE L1 5107 5308 -856 2347 97 0 10 chr6 149748092 149748402 -39531152 + AluY SINE Alu 1 307 -4 698 269 33 17 chr6 149748402 149748538 -39531016 + L1ME LINE L1 5308 5440 -724 9952 130 31 13 chr6 149748546 149750236 -39529318 + L1P3 LINE L1 1 2779 -3682 698 246 34 52 chr6 149750218 149750334 -39529220 + L1ME LINE L1 5423 5540 -630 * 2367 82 7 13 chr6 149750334 149750639 -39528915 + AluY SINE Alu 1 303 -8 698 246 34 52 chr6 149750639 149750790 -39528764 + L1ME LINE L1 5540 5685 -485 1655 183 50 0 chr6 149751386 149751665 -39527889 - AluJb SINE Alu -19 293 1 1622 238 29 47 chr6 149751713 149752137 -39527417 + MLT1H LTR MaLR 72 487 -62 2273 99 3 0 chr6 149752137 149752431 -39527123 - AluSp SINE Alu -15 298 4 1622 238 29 47 chr6 149752431 149752493 -39527061 + MLT1H LTR MaLR 487 549 0 735 343 77 19 chr6 149752511 149752992 -39526562 + L2 LINE L2 2805 3313 0 324 252 47 28 chr6 149753657 149753764 -39525790 - L2 LINE L2 0 3313 3205 307 287 60 53 chr6 149754104 149754254 -39525300 - MLT1J LTR MaLR -360 151 1 2537 62 0 37 chr6 149754846 149755168 -39524386 + AluY SINE Alu 2 311 0 1912 133 7 20 chr6 149755281 149755582 -39523972 - AluSg SINE Alu -13 297 1 2401 70 9 35 chr6 149755974 149756289 -39523265 + AluY SINE Alu 1 307 -4 1682 186 14 17 chr6 149756535 149756830 -39522724 + AluJo SINE Alu 2 295 -17 2462 76 0 7 chr6 149757406 149757709 -39521845 + AluY SINE Alu 2 302 -9 2316 98 0 3 chr6 149758701 149758997 -39520557 - AluSc SINE Alu -14 295 1 803 187 0 8 chr6 149759096 149759230 -39520324 - FLAM_C SINE Alu 0 133 1 2376 79 0 0 chr6 149759241 149759532 -39520022 - AluY SINE Alu -20 291 1 763 231 12 29 chr6 149760560 149760733 -39518821 + MER5B DNA MER1_type 7 176 -2 705 238 50 33 chr6 149760738 149760919 -39518635 + MER5A DNA MER1_type 1 184 -5 1720 157 18 7 chr6 149761151 149761437 -39518117 + AluJb SINE Alu 1 289 -23 194 62 31 0 chr6 149761440 149761472 -39518082 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 25517 173 32 18 chr6 149761640 149767125 -39512429 + L1PB4 LINE L1 10 5682 -779 2198 117 0 0 chr6 149767125 149767408 -39512146 + AluSc SINE Alu 1 283 -26 198 0 0 0 chr6 149767408 149767430 -39512124 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 878 205 32 11 chr6 149767532 149767717 -39511837 - MER45C DNA AcHobo -3 950 762 2375 102 3 0 chr6 149767860 149768163 -39511391 + AluSc SINE Alu 1 304 -5 1142 173 4 54 chr6 149768561 149768744 -39510810 + L1PB4 LINE L1 6209 6375 -96 2275 93 28 0 chr6 149768744 149769035 -39510519 - AluSg SINE Alu -11 299 1 1142 173 4 54 chr6 149769035 149769128 -39510426 + L1PB4 LINE L1 6375 6471 0 1777 147 21 18 chr6 149769646 149769959 -39509595 + AluJb SINE Alu 3 316 0 2109 127 3 0 chr6 149771061 149771352 -39508202 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr6 149771460 149771481 -39508073 + AT_rich Low_complexity Low_complexity 1 21 0 203 304 130 0 chr6 149772067 149772159 -39507395 + L2 LINE L2 3169 3272 0 2345 108 0 0 chr6 149774541 149774846 -39504708 - AluSq SINE Alu -8 305 1 221 313 90 77 chr6 149775174 149775407 -39504147 - L2 LINE L2 -71 3201 2966 229 348 30 18 chr6 149775422 149775591 -39503963 - MIR SINE MIR -67 141 8 1328 105 73 0 chr6 149775951 149776142 -39503412 - AluY SINE Alu -1 310 106 503 95 14 14 chr6 149776142 149776216 -39503338 + AluY SINE Alu 16 89 -221 1969 143 0 10 chr6 149776693 149776993 -39502561 + AluJb SINE Alu 1 297 -15 2075 111 4 0 chr6 149776995 149777266 -39502288 + AluSx SINE Alu 1 272 -40 183 80 0 0 chr6 149777266 149777291 -39502263 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 487 310 30 20 chr6 149778217 149778410 -39501144 + MIR SINE MIR 7 204 -58 2250 113 0 0 chr6 149778410 149778703 -39500851 + AluSx SINE Alu 1 293 -19 2458 98 0 0 chr6 149780506 149780811 -39498743 - AluY SINE Alu -6 305 1 2306 90 0 32 chr6 149781385 149781696 -39497858 + AluY SINE Alu 1 301 -10 430 239 68 0 chr6 149782150 149782267 -39497287 - MIR SINE MIR -45 217 93 325 253 86 63 chr6 149782500 149782674 -39496880 + MER5B DNA MER1_type 1 178 0 2901 152 9 6 chr6 149783027 149783493 -39496061 + MLT1C LTR MaLR 1 467 0 1485 184 56 4 chr6 149784392 149784689 -39494865 + AluJo SINE Alu 1 311 0 2526 146 29 34 chr6 149784913 149785291 -39494263 + MSTB2 LTR MaLR 15 392 -65 2469 79 0 0 chr6 149785291 149785594 -39493960 - AluY SINE Alu -8 303 1 2526 146 29 34 chr6 149785594 149785660 -39493894 + MSTB2 LTR MaLR 392 457 0 342 333 46 7 chr6 149786192 149786345 -39493209 - L2 LINE L2 -12 3301 3143 762 258 101 16 chr6 149786411 149786659 -39492895 + MLT1J2 LTR MaLR 65 333 -117 4588 294 88 21 chr6 149786745 149787228 -39492326 - L2 LINE L2 -151 3162 2713 2377 81 0 19 chr6 149787228 149787537 -39492017 + AluSc SINE Alu 1 303 -6 4588 294 88 21 chr6 149787537 149789213 -39490341 - L2 LINE L2 -600 2713 860 284 278 10 31 chr6 149789341 149789438 -39490116 + L2 LINE L2 2995 3089 -183 561 300 56 75 chr6 149789635 149790291 -39489263 + L2 LINE L2 2643 3313 0 2208 116 0 10 chr6 149790646 149790949 -39488605 + AluSx SINE Alu 1 300 -12 2522 81 0 3 chr6 149791355 149791665 -39487889 + AluSg1 SINE Alu 1 309 0 180 0 0 0 chr6 149794884 149794904 -39484650 + (A)n Simple_repeat Simple_repeat 1 20 0 267 313 42 35 chr6 149795430 149795574 -39483980 - MIR3 SINE MIR -30 178 34 191 324 44 49 chr6 149796266 149796470 -39483084 - L2 LINE L2 -190 3082 2880 2363 101 0 0 chr6 149796535 149796831 -39482723 - AluSg SINE Alu -14 296 1 195 261 0 0 chr6 149797013 149797059 -39482495 - MIR SINE MIR -135 73 28 23 0 0 0 chr6 149797100 149797123 -39482431 + AT_rich Low_complexity Low_complexity 1 23 0 2255 177 37 33 chr6 149797444 149797592 -39481962 - LOR1b LTR ERV1 0 461 315 2289 117 3 0 chr6 149797592 149797890 -39481664 + AluSx SINE Alu 1 299 -13 2255 177 37 33 chr6 149797890 149798198 -39481356 - LOR1b LTR ERV1 -146 315 3 2104 96 0 28 chr6 149798198 149798513 -39481041 - AluY SINE Alu 0 307 1 2179 94 11 0 chr6 149798608 149798910 -39480644 - AluSc SINE Alu 0 305 1 1506 187 46 26 chr6 149798935 149799240 -39480314 + AluJo SINE Alu 1 311 -1 913 212 22 5 chr6 149800716 149800900 -39478654 + MER58A DNA MER1_type 30 216 -8 1848 173 35 35 chr6 149800903 149801278 -39478276 - THE1C LTR MaLR 0 375 1 239 152 0 0 chr6 149802625 149802671 -39476883 + (CCCCAG)n Simple_repeat Simple_repeat 3 48 0 2248 110 7 0 chr6 149804146 149804455 -39475099 + AluSx SINE Alu 1 311 -1 2255 130 0 0 chr6 149804491 149804792 -39474762 + AluSx SINE Alu 1 301 -11 343 306 16 0 chr6 149804990 149805111 -39474443 - MIR SINE MIR -21 241 119 322 325 106 45 chr6 149805327 149805480 -39474074 - L3 LINE CR1 -73 1504 1362 1365 168 96 11 chr6 149805480 149805760 -39473794 - AluJo SINE Alu -8 304 1 322 325 106 45 chr6 149805760 149806003 -39473551 - L3 LINE CR1 -215 1362 1084 2316 100 0 7 chr6 149806221 149806530 -39473024 - AluSq SINE Alu -6 307 1 232 163 0 61 chr6 149806602 149806651 -39472903 + polypurine Low_complexity Low_complexity 3 48 0 22 56 0 0 chr6 149809414 149809450 -39470104 + AT_rich Low_complexity Low_complexity 1 36 0 1822 126 56 14 chr6 149810017 149810302 -39469252 + AluSx SINE Alu 1 297 -15 204 364 119 0 chr6 149810407 149810558 -39468996 + L2 LINE L2 3104 3272 0 251 311 118 34 chr6 149810727 149810771 -39468783 - L2 LINE L2 0 3272 3233 3091 64 17 68 chr6 149810771 149811242 -39468312 - L1PA13 LINE L1 -1 6162 5716 251 311 118 34 chr6 149811242 149811316 -39468238 - L2 LINE L2 -39 3233 3144 2096 138 47 19 chr6 149811324 149811686 -39467868 - THE1C LTR MaLR 0 375 4 274 207 0 117 chr6 149812012 149812123 -39467431 + MIR SINE MIR 133 230 -32 2079 124 10 10 chr6 149812421 149812727 -39466827 - AluSx SINE Alu -6 306 1 267 376 75 11 chr6 149812727 149812993 -39466561 - L2 LINE L2 -759 2555 2273 1826 176 3 3 chr6 149813753 149814043 -39465511 - AluJb SINE Alu -22 290 1 434 157 0 36 chr6 149814096 149814179 -39465375 - FLAM_C SINE Alu 0 143 64 180 77 0 0 chr6 149814328 149814354 -39465200 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 352 269 0 71 chr6 149814358 149814499 -39465055 + L2 LINE L2 3182 3312 -1 585 251 114 9 chr6 149814519 149814746 -39464808 + L2 LINE L2 3023 3273 -40 2419 88 0 0 chr6 149815308 149815602 -39463952 + AluSq SINE Alu 1 294 -19 3438 130 41 21 chr6 149815649 149816433 -39463121 + MER21A LTR ERV1 16 925 -6 1766 121 70 51 chr6 149816501 149816832 -39462722 - MER1B DNA MER1_type 0 337 1 1546 124 120 11 chr6 149817497 149817772 -39461782 + AluSg SINE Alu 1 305 -5 1741 161 28 17 chr6 149817845 149818136 -39461418 - AluJb SINE Alu -18 294 1 252 293 43 58 chr6 149818678 149818866 -39460688 - L2 LINE L2 -17 3296 3112 214 242 17 8 chr6 149818914 149819001 -39460553 - L2 LINE L2 -263 3009 2923 314 226 86 11 chr6 149819001 149819094 -39460460 - MER91B DNA MER1_type 0 190 91 962 202 53 59 chr6 149819194 149819516 -39460038 + MER33 DNA MER1_type 1 320 -4 313 319 30 12 chr6 149820433 149820599 -39458955 - MIR SINE MIR 0 262 94 189 379 45 23 chr6 149820904 149821081 -39458473 + MIR3 SINE MIR 20 200 -8 23 33 0 0 chr6 149821250 149821280 -39458274 + AT_rich Low_complexity Low_complexity 1 30 0 239 331 63 16 chr6 149821280 149821407 -39458147 + MIR3 SINE MIR 14 146 -62 399 265 19 99 chr6 149821577 149821661 -39457893 - MIR SINE MIR -49 213 124 2282 104 3 16 chr6 149821661 149821970 -39457584 - AluSx SINE Alu -7 305 1 399 265 19 99 chr6 149821970 149822096 -39457458 - MIR SINE MIR -138 124 20 772 286 14 0 chr6 149822856 149823073 -39456481 + MIR SINE MIR 21 240 -22 1196 197 32 7 chr6 149823151 149823430 -39456124 - L1MB7 LINE L1 -8 6176 5891 1026 114 0 0 chr6 149823899 149824031 -39455523 - AluSq/x SINE Alu -180 132 1 2159 118 0 7 chr6 149824978 149825266 -39454288 + AluSx SINE Alu 1 286 -26 1117 96 14 0 chr6 149825343 149825489 -39454065 - AluSq SINE Alu -11 302 155 734 131 0 0 chr6 149825491 149825598 -39453956 - AluSq SINE Alu -205 108 2 3657 131 32 27 chr6 149826731 149827357 -39452197 - L1MA4 LINE L1 -7 6293 5665 847 206 106 5 chr6 149828001 149828117 -39451437 - MER20 DNA MER1_type 0 219 116 1512 141 113 54 chr6 149828117 149828471 -39451083 - THE1C LTR MaLR 0 375 1 847 206 106 5 chr6 149828471 149828553 -39451001 - MER20 DNA MER1_type -103 116 1 2137 104 10 3 chr6 149828602 149828891 -39450663 + AluSc SINE Alu 1 291 -18 2211 107 7 29 chr6 149829226 149829534 -39450020 + AluSg SINE Alu 5 305 -5 585 184 116 152 chr6 149830976 149830997 -39448557 + MLT2D LTR ERVL 1 21 -393 2775 80 16 11 chr6 149830997 149831370 -39448184 - THE1C LTR MaLR 0 375 1 585 184 116 152 chr6 149831370 149831465 -39448089 + MLT2D LTR ERVL 21 118 -296 2165 112 3 0 chr6 149831465 149831750 -39447804 + AluSx SINE Alu 1 286 -26 585 184 116 152 chr6 149831750 149831968 -39447586 + MLT2D LTR ERVL 118 324 -90 373 128 0 176 chr6 149832056 149832158 -39447396 - MER69 DNA AcHobo 0 2526 2443 1947 127 0 83 chr6 149833119 149833443 -39446111 + AluJb SINE Alu 1 297 -15 2424 82 0 0 chr6 149833770 149834074 -39445480 + AluY SINE Alu 1 304 -7 2275 108 0 0 chr6 149834120 149834416 -39445138 + AluSx SINE Alu 1 296 -16 2795 217 70 2 chr6 149834551 149835149 -39444405 + MER82 DNA MER2_type 14 652 -1 21 0 0 0 chr6 149835151 149835172 -39444382 + AT_rich Low_complexity Low_complexity 1 21 0 2098 120 3 0 chr6 149835460 149835784 -39443770 - AluSx SINE Alu 0 325 1 312 206 29 15 chr6 149835875 149835943 -39443611 + MER3 DNA MER1_type 41 109 -100 654 177 0 0 chr6 149835971 149836084 -39443470 + FRAM SINE Alu 49 161 -15 712 179 100 0 chr6 149836088 149836228 -39443326 - MER3 DNA MER1_type -55 154 1 1424 173 85 7 chr6 149837468 149837739 -39441815 + AluJb SINE Alu 1 292 -20 2422 69 0 23 chr6 149837895 149838200 -39441354 - AluY SINE Alu -12 299 2 21 0 0 0 chr6 149838389 149838410 -39441144 + AT_rich Low_complexity Low_complexity 1 21 0 2239 84 0 0 chr6 149838649 149838924 -39440630 + AluY SINE Alu 1 275 -36 312 120 0 0 chr6 149838924 149838974 -39440580 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 207 0 0 0 chr6 149839151 149839174 -39440380 + (TG)n Simple_repeat Simple_repeat 1 23 0 603 249 101 43 chr6 149839543 149839800 -39439754 - MER97b DNA MER1_type? -9 1044 773 * 1424 223 33 6 chr6 149839799 149840135 -39439419 - MER97c DNA MER1_type? -445 645 301 182 36 0 36 chr6 149840137 149840165 -39439389 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 1155 127 0 0 chr6 149840165 149840323 -39439231 - AluSq SINE Alu -28 285 128 1369 221 27 0 chr6 149840324 149840622 -39438932 - MER97c DNA MER1_type? -783 307 2 2138 108 4 0 chr6 149840830 149841109 -39438445 + AluSx SINE Alu 3 282 -30 29 28 0 0 chr6 149841278 149841314 -39438240 + AT_rich Low_complexity Low_complexity 1 36 0 270 204 41 10 chr6 149841495 149841593 -39437961 + (TA)n Simple_repeat Simple_repeat 2 102 0 30 58 0 14 chr6 149841682 149841717 -39437837 + AT_rich Low_complexity Low_complexity 1 36 -32 1510 152 3 84 chr6 149841717 149842040 -39437514 + AluJo SINE Alu 1 297 -15 30 58 0 14 chr6 149842040 149842073 -39437481 + AT_rich Low_complexity Low_complexity 36 68 0 2070 114 9 25 chr6 149842415 149842551 -39437003 + AluSx SINE Alu 1 138 -174 2034 137 0 3 chr6 149842551 149842844 -39436710 + AluJb SINE Alu 1 292 -20 2070 114 9 25 chr6 149842844 149843023 -39436531 + AluSx SINE Alu 138 311 -1 776 233 35 30 chr6 149843471 149843673 -39435881 - MER63A DNA MER1_type -7 203 1 2524 114 17 28 chr6 149843956 149844275 -39435279 - LTR18A LTR ERVL 0 357 41 2980 9 0 0 chr6 149844275 149844592 -39434962 - AluYb8 SINE Alu -1 317 1 2524 114 17 28 chr6 149844592 149844633 -39434921 - LTR18A LTR ERVL -316 41 1 462 214 41 0 chr6 149844699 149844797 -39434757 - HERVL18 LTR ERVL 0 6047 5946 664 128 11 0 chr6 149844856 149844950 -39434604 - HERVL18 LTR ERVL -1559 4488 4394 4969 141 75 33 chr6 149844958 149845290 -39434264 - HERVL18 LTR ERVL -2474 3573 3257 2643 17 0 7 chr6 149845290 149845588 -39433966 + AluY SINE Alu 1 296 -15 2488 68 0 0 chr6 149845598 149845892 -39433662 + AluY SINE Alu 1 294 -17 4969 141 75 33 chr6 149845892 149846369 -39433185 - HERVL18 LTR ERVL -2798 3249 2718 1628 111 11 2 chr6 149846366 149846640 -39432914 - HERVL18 LTR ERVL -3595 2452 2119 * 1832 157 10 9 chr6 149846639 149847131 -39432423 - HERVL18 LTR ERVL -4237 1810 1255 1867 191 0 74 chr6 149847131 149847258 -39432296 - HERVL18 LTR ERVL -5589 458 323 2416 92 0 22 chr6 149847258 149847575 -39431979 - AluSg SINE Alu 0 310 1 1867 191 0 74 chr6 149847575 149847840 -39431714 - HERVL18 LTR ERVL -5724 323 95 2459 105 66 0 chr6 149847865 149848199 -39431355 - LTR18A LTR ERVL -1 356 1 788 225 115 35 chr6 149848200 149848622 -39430932 - LTR33 LTR ERVL -8 513 20 1872 103 8 11 chr6 149849210 149849472 -39430082 + AluSq SINE Alu 44 304 -9 1660 137 22 77 chr6 149849540 149849853 -39429701 + AluJb SINE Alu 1 296 -16 2154 158 28 52 chr6 149849926 149850150 -39429404 - MLT1B LTR MaLR 0 390 179 2303 96 3 3 chr6 149850150 149850451 -39429103 - AluSx SINE Alu -11 301 1 2154 158 28 52 chr6 149850451 149850626 -39428928 - MLT1B LTR MaLR -211 179 1 743 90 0 0 chr6 149851253 149851353 -39428201 + L1PA16 LINE L1 6058 6157 -9 21 71 0 0 chr6 149851353 149851395 -39428159 + AT_rich Low_complexity Low_complexity 1 42 0 559 240 127 0 chr6 149851514 149851664 -39427890 + MER58 DNA MER1_type 1 169 -172 2334 78 0 36 chr6 149851903 149852211 -39427343 + AluY SINE Alu 1 297 -14 242 224 15 45 chr6 149852581 149852648 -39426906 + L2 LINE L2 3206 3270 -2 436 186 36 14 chr6 149853624 149853736 -39425818 + CT-rich Low_complexity Low_complexity 3 120 -25 2009 129 62 54 chr6 149853736 149853775 -39425779 - MLT1B LTR MaLR 0 390 353 2181 117 0 0 chr6 149853775 149854105 -39425449 + AluSx SINE Alu 1 330 0 2009 129 62 54 chr6 149854105 149854449 -39425105 - MLT1B LTR MaLR -37 353 1 436 186 36 14 chr6 149854449 149854476 -39425078 + CT-rich Low_complexity Low_complexity 120 145 0 387 0 0 0 chr6 149854584 149854627 -39424927 + (CA)n Simple_repeat Simple_repeat 2 44 0 182 361 59 27 chr6 149855959 149856178 -39423376 - L2 LINE L2 -404 2910 2685 2332 87 0 0 chr6 149856351 149856649 -39422905 - AluY SINE Alu -13 298 1 6763 119 11 44 chr6 149856649 149857989 -39421565 + L1MA4 LINE L1 4987 6300 0 203 271 0 0 chr6 149858027 149858075 -39421479 + A-rich Low_complexity Low_complexity 1 48 0 210 162 0 0 chr6 149858205 149858242 -39421312 + (TTAA)n Simple_repeat Simple_repeat 2 38 0 192 298 35 53 chr6 149858517 149858631 -39420923 - L3 LINE CR1 -454 1123 1012 193 283 9 71 chr6 149858712 149858825 -39420729 - L3 LINE CR1 -692 885 780 1052 281 76 52 chr6 149858974 149859551 -39420003 - MLT1L LTR MaLR 0 615 25 2468 114 19 6 chr6 149859799 149860158 -39419396 - THE1B LTR MaLR 0 364 1 2060 92 75 0 chr6 149860244 149860526 -39419028 + AluY SINE Alu 1 303 -8 21 0 0 0 chr6 149860612 149860633 -39418921 + AT_rich Low_complexity Low_complexity 1 21 0 1207 251 53 3 chr6 149860811 149861150 -39418404 + L1MB7 LINE L1 5781 6136 -48 613 205 0 47 chr6 149861338 149861465 -39418089 - FLAM_A SINE Alu -9 124 4 350 324 121 12 chr6 149862233 149862637 -39416917 - L1MC/D LINE L1 -1986 5822 5375 2455 80 3 0 chr6 149862680 149862981 -39416573 - AluSp SINE Alu -11 302 1 2029 114 31 14 chr6 149863390 149863679 -39415875 + AluSx SINE Alu 1 294 -18 190 91 0 45 chr6 149863772 149863816 -39415738 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 23 54 0 0 chr6 149864023 149864060 -39415494 + AT_rich Low_complexity Low_complexity 1 37 0 419 273 77 54 chr6 149864864 149865005 -39414549 + L1MC/D LINE L1 5398 5549 -572 1363 197 119 36 chr6 149865005 149865426 -39414128 - MSTB2 LTR MaLR 0 457 2 419 273 77 54 chr6 149865426 149865544 -39414010 + L1MC/D LINE L1 5549 5663 -458 2053 174 57 35 chr6 149865724 149866148 -39413406 + MLT1C LTR MaLR 3 435 -32 1467 205 15 0 chr6 149866148 149866411 -39413143 + Tigger7 DNA MER2_type 1 267 -2220 608 155 10 29 chr6 149866413 149866516 -39413038 + Tigger7 DNA MER2_type 2387 2487 0 180 255 0 20 chr6 149866571 149866622 -39412932 - L2 LINE L2 -834 2480 2431 204 379 10 0 chr6 149867275 149867378 -39412176 - MIR3 SINE MIR -51 157 54 198 0 0 0 chr6 149868596 149868618 -39410936 + (TG)n Simple_repeat Simple_repeat 2 23 0 341 104 179 0 chr6 149868621 149868688 -39410866 + L1MB4 LINE L1 6101 6179 -1 2336 117 0 0 chr6 149869176 149869485 -39410069 + AluSg SINE Alu 2 310 0 519 105 105 0 chr6 149870299 149870385 -39409169 - L1MB4 LINE L1 -1 6179 6085 1827 130 19 74 chr6 149871853 149872230 -39407324 - L1MB3 LINE L1 -76 6107 5752 2473 62 0 3 chr6 149872287 149872577 -39406977 - AluY SINE Alu -21 290 2 261 0 0 0 chr6 149872581 149872610 -39406944 + (T)n Simple_repeat Simple_repeat 1 29 0 2344 95 13 0 chr6 149873014 149873320 -39406234 + AluSx SINE Alu 1 310 -2 407 318 16 0 chr6 149873703 149873832 -39405722 - L2 LINE L2 0 3313 3183 2172 106 3 26 chr6 149873964 149874275 -39405279 - AluSp SINE Alu -9 304 1 832 175 0 0 chr6 149874301 149874438 -39405116 + FLAM_C SINE Alu 1 137 -6 2557 50 0 0 chr6 149876436 149876735 -39402819 - AluY SINE Alu -12 299 1 234 264 0 0 chr6 149876801 149876854 -39402700 + GA-rich Low_complexity Low_complexity 2 54 0 7213 125 160 62 chr6 149877099 149878644 -39400910 + pTR5 LTR ERV1 743 2438 0 517 193 57 74 chr6 149878667 149878737 -39400817 + MER34 LTR ERV1 370 440 -102 2127 138 0 0 chr6 149878737 149879034 -39400520 - AluSx SINE Alu -15 297 1 517 193 57 74 chr6 149879034 149879139 -39400415 + MER34 LTR ERV1 440 542 0 1869 154 11 3 chr6 149879368 149879654 -39399900 - AluJb SINE Alu -22 290 3 245 249 96 79 chr6 149879747 149879924 -39399630 + HAL1b LINE L1 748 927 -421 29 47 0 0 chr6 149879954 149879997 -39399557 + AT_rich Low_complexity Low_complexity 1 43 0 731 131 24 0 chr6 149879997 149880695 -39398859 + (TA)n Simple_repeat Simple_repeat 1 714 0 28 0 0 0 chr6 149880695 149880723 -39398831 + AT_rich Low_complexity Low_complexity 1 28 0 2226 131 0 0 chr6 149880993 149881306 -39398248 + AluSq SINE Alu 1 313 0 205 326 32 36 chr6 149881979 149882136 -39397418 - MIR SINE MIR 0 208 49 1143 253 59 66 chr6 149884815 149885361 -39394193 - MER34 LTR ERV1 0 542 1 494 265 67 40 chr6 149885547 149885845 -39393709 - HAL1 LINE L1 -760 1747 1442 848 163 0 0 chr6 149885855 149885996 -39393558 - FLAM_C SINE Alu -2 141 1 2407 100 19 19 chr6 149886127 149886497 -39393057 - L1PB1 LINE L1 0 6151 5782 206 195 24 0 chr6 149886497 149886538 -39393016 + (TA)n Simple_repeat Simple_repeat 1 42 0 398 179 0 14 chr6 149886538 149886617 -39392937 - L1PB1 LINE L1 -360 5791 5716 438 264 57 131 chr6 149886630 149887051 -39392503 - HAL1 LINE L1 -1274 1233 844 1403 109 42 5 chr6 149887078 149887270 -39392284 - AluSx SINE Alu -113 199 1 2030 158 0 0 chr6 149887300 149887610 -39391944 + AluSx SINE Alu 1 310 -2 248 210 270 10 chr6 149888053 149888153 -39391401 + MER5A DNA MER1_type 63 188 -1 288 248 94 43 chr6 149889371 149889488 -39390066 - L2 LINE L2 -25 3247 3125 369 273 8 16 chr6 149889703 149889831 -39389723 + MIR SINE MIR 21 147 -115 1900 169 0 0 chr6 149890319 149890609 -39388945 - AluJb SINE Alu -19 293 4 246 316 95 26 chr6 149891636 149891826 -39387728 - MIR SINE MIR -15 247 45 22 0 0 0 chr6 149892125 149892147 -39387407 + AT_rich Low_complexity Low_complexity 1 22 0 1413 174 60 29 chr6 149892468 149892749 -39386805 - AluJo SINE Alu -22 290 1 619 278 99 9 chr6 149893409 149893621 -39385933 + MIR SINE MIR 8 238 -24 181 324 54 0 chr6 149893687 149893761 -39385793 + MIR SINE MIR 71 148 -114 2417 88 0 0 chr6 149894938 149895234 -39384320 - AluSx SINE Alu -13 299 4 556 262 47 0 chr6 149895412 149895584 -39383970 + L1MD3 LINE L1 7808 7987 -8 1992 122 7 14 chr6 149895584 149895878 -39383676 - AluJb SINE Alu -19 293 2 1606 179 10 91 chr6 149896814 149897222 -39382332 + MER65A LTR ERV1 69 443 -2 1113 248 127 8 chr6 149898132 149898633 -39380921 - L2 LINE L2 -2 3311 2754 2124 126 30 3 chr6 149898749 149899050 -39380504 - AluSx SINE Alu -3 309 1 2297 115 0 0 chr6 149899076 149899372 -39380182 + AluSx SINE Alu 1 296 -16 312 224 40 13 chr6 149899470 149899546 -39380008 + L1MC4 LINE L1 6755 6832 -1210 216 0 0 0 chr6 149899857 149899881 -39379673 + (GAA)n Simple_repeat Simple_repeat 2 25 0 189 171 0 0 chr6 149900048 149900083 -39379471 + (CA)n Simple_repeat Simple_repeat 2 36 0 906 232 110 13 chr6 149900537 149900847 -39378707 + L2 LINE L2 1139 1478 -1836 798 291 48 49 chr6 149901832 149902565 -39376989 - L2 LINE L2 -24 3289 2551 315 263 134 49 chr6 149902645 149902892 -39376662 - L2 LINE L2 -756 2558 2291 2085 119 0 7 chr6 149903805 149904113 -39375441 - AluSq SINE Alu 0 308 3 186 380 9 19 chr6 149904616 149904724 -39374830 - L2 LINE L2 -20 3293 3187 2328 112 0 0 chr6 149906246 149906558 -39372996 - AluSx SINE Alu 0 312 1 209 284 18 46 chr6 149906579 149906688 -39372866 + L2 LINE L2 3168 3273 -40 975 217 25 5 chr6 149906689 149906892 -39372662 + MER72 LTR ERV1 1 207 -515 974 189 9 52 chr6 149906956 149907168 -39372386 + MER72 LTR ERV1 244 446 -276 910 140 0 0 chr6 149907219 149907362 -39372192 + AluSg/x SINE Alu 168 310 0 1612 158 11 0 chr6 149907485 149907751 -39371803 + MER72 LTR ERV1 454 722 0 310 329 62 7 chr6 149907779 149907925 -39371629 - MIR SINE MIR -10 252 99 25 0 0 0 chr6 149908311 149908336 -39371218 + AT_rich Low_complexity Low_complexity 1 25 0 2168 130 3 0 chr6 149908500 149908800 -39370754 - AluSx SINE Alu -11 301 1 183 100 0 0 chr6 149909566 149909596 -39369958 + (CA)n Simple_repeat Simple_repeat 1 30 0 190 0 67 0 chr6 149911168 149911198 -39368356 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2550 62 0 0 chr6 149911204 149911496 -39368058 - AluY SINE Alu -19 292 1 645 291 153 42 chr6 149962219 149962724 -39316830 - L2 LINE L2 -943 2371 1811 1001 274 24 24 chr6 149962729 149963058 -39316496 + MER46C DNA MER2_type 1 329 -9 488 280 24 16 chr6 149963494 149963619 -39315935 - L2 LINE L2 -2048 1266 1141 24 0 0 0 chr6 149963709 149963733 -39315821 + AT_rich Low_complexity Low_complexity 1 24 0 267 341 63 47 chr6 149963815 149964114 -39315440 - L2 LINE L2 -2547 767 464 22 0 0 0 chr6 149964992 149965014 -39314540 + AT_rich Low_complexity Low_complexity 1 22 0 313 255 11 53 chr6 149965399 149965493 -39314061 + MIR SINE MIR 42 131 -77 251 220 189 57 chr6 149965793 149965952 -39313602 - MIR3 SINE MIR -25 183 4 184 321 64 9 chr6 149966306 149966415 -39313139 + L2 LINE L2 3193 3307 -6 266 284 164 12 chr6 149966606 149966753 -39312801 - MIR SINE MIR -48 214 54 2195 55 41 31 chr6 149967151 149967442 -39312112 - AluY SINE Alu -17 294 1 252 250 0 0 chr6 149968536 149968604 -39310950 + L1P LINE L1 4879 4946 -1200 1554 164 14 45 chr6 149968749 149969041 -39310513 + AluJo SINE Alu 6 288 -24 2226 115 3 3 chr6 149969135 149969439 -39310115 + AluSq SINE Alu 1 304 -9 291 276 159 12 chr6 149969573 149969795 -39309759 + L1ME LINE L1 5631 5807 -314 23 0 0 0 chr6 149969955 149969978 -39309576 + AT_rich Low_complexity Low_complexity 1 23 0 183 133 0 0 chr6 149970413 149970443 -39309111 - L2 LINE L2 -4 3268 3239 730 234 100 43 chr6 149970556 149970787 -39308767 + MIR SINE MIR 2 245 -17 339 331 138 36 chr6 149970955 149971249 -39308305 - L2 LINE L2 -458 2856 2505 745 215 112 40 chr6 149971249 149971570 -39307984 - MER2 DNA MER2_type 0 344 1 339 331 138 36 chr6 149971570 149971695 -39307859 - L2 LINE L2 -809 2505 2394 180 320 147 0 chr6 149971891 149971966 -39307588 - L2 LINE L2 -46 3267 3182 1576 154 9 71 chr6 149972249 149972573 -39306981 + AluJb SINE Alu 1 304 -8 225 247 222 0 chr6 149972827 149972908 -39306646 - MIR3 SINE MIR -39 169 71 2024 133 3 7 chr6 149973098 149973399 -39306155 - AluSx SINE Alu -12 300 1 2187 102 3 7 chr6 149973399 149973702 -39305852 - AluSx SINE Alu -10 302 1 219 311 198 9 chr6 149974227 149974333 -39305221 + L2 LINE L2 3179 3304 -9 21 36 0 0 chr6 149976163 149976191 -39303363 + AT_rich Low_complexity Low_complexity 1 28 0 657 303 34 25 chr6 149976535 149976773 -39302781 - MIR SINE MIR -3 259 20 281 183 28 14 chr6 149978203 149978274 -39301280 + L1MB2 LINE L1 5581 5652 -469 234 188 62 0 chr6 149978376 149978424 -39301130 + L1MB2 LINE L1 5972 6022 -149 492 333 12 6 chr6 149978562 149978724 -39300830 + MIR SINE MIR 56 218 -44 2408 73 0 0 chr6 149980679 149980982 -39298572 + AluY SINE Alu 1 303 -8 21 57 0 0 chr6 149981607 149981642 -39297912 + AT_rich Low_complexity Low_complexity 1 35 0 2562 68 0 0 chr6 149981675 149981986 -39297568 + AluY SINE Alu 1 311 0 287 300 55 0 chr6 149983508 149983618 -39295936 + HAL1b LINE L1 429 544 -804 21 57 0 0 chr6 149983660 149983695 -39295859 + AT_rich Low_complexity Low_complexity 1 35 0 2041 137 13 0 chr6 149984426 149984733 -39294821 + AluSx SINE Alu 1 311 -1 1796 145 21 7 chr6 149985293 149985582 -39293972 - AluJb SINE Alu -19 293 1 225 244 122 0 chr6 149986138 149986220 -39293334 + L1MC4a LINE L1 3711 3802 -2344 264 149 0 0 chr6 149986874 149986921 -39292633 + (CA)n Simple_repeat Simple_repeat 1 47 0 231 261 127 30 chr6 149987042 149987176 -39292378 + L1MC4a LINE L1 5457 5603 -518 424 266 85 31 chr6 149987205 149987527 -39292027 + L1MC4a LINE L1 5694 6032 -89 416 241 56 96 chr6 149987568 149987817 -39291737 - L2 LINE L2 -30 3283 3045 183 214 18 27 chr6 149988172 149988284 -39291270 + A-rich Low_complexity Low_complexity 2 112 0 2722 186 82 34 chr6 149988306 149988928 -39290626 - MER82 DNA MER2_type 0 653 2 194 333 60 22 chr6 149988970 149989153 -39290401 - L2 LINE L2 -779 2535 2346 695 213 0 22 chr6 149989349 149989485 -39290069 - FLAM_A SINE Alu 0 133 1 23 101 0 0 chr6 149990628 149990707 -39288847 + AT_rich Low_complexity Low_complexity 1 79 0 2314 90 0 0 chr6 149991878 149992167 -39287387 + AluSx SINE Alu 1 289 -23 363 264 86 31 chr6 149992374 149992537 -39287017 + MER5A DNA MER1_type 18 189 0 2113 87 36 0 chr6 149992687 149992964 -39286590 + AluSc SINE Alu 1 287 -22 2502 56 0 34 chr6 149992975 149993297 -39286257 + AluY SINE Alu 1 311 0 21 0 0 0 chr6 149993383 149993404 -39286150 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr6 149996333 149996372 -39283182 + AT_rich Low_complexity Low_complexity 1 39 0 1948 140 3 19 chr6 149996546 149996861 -39282693 + AluSx SINE Alu 1 310 -2 2208 107 7 3 chr6 149997857 149998165 -39281389 - AluSx SINE Alu -3 309 1 22 70 0 0 chr6 149998246 149998289 -39281265 + AT_rich Low_complexity Low_complexity 1 43 0 278 0 0 51 chr6 149998874 149998913 -39280641 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2314 99 0 13 chr6 150000042 150000354 -39279200 + AluSq SINE Alu 1 308 -5 428 295 76 5 chr6 150000624 150000834 -39278720 + Tigger8 DNA MER2_type 315 539 -127 512 191 21 85 chr6 150002006 150002195 -39277359 + MER104 DNA Tc2 4 180 0 233 208 0 0 chr6 150002616 150002664 -39276890 + MADE1 DNA Mariner 1 48 -32 340 277 37 90 chr6 150002928 150003069 -39276485 - MER5A DNA MER1_type 0 189 48 2170 104 3 13 chr6 150003069 150003367 -39276187 + AluSx SINE Alu 1 295 -17 340 277 37 90 chr6 150003367 150003413 -39276141 - MER5A DNA MER1_type -141 48 1 677 174 0 0 chr6 150004092 150004201 -39275353 + FLAM_C SINE Alu 1 109 -34 181 266 93 81 chr6 150004885 150004978 -39274576 + L2 LINE L2 2485 2575 -739 414 194 226 13 chr6 150004978 150005133 -39274421 - MER5A DNA MER1_type -1 188 1 181 266 93 81 chr6 150005133 150005287 -39274267 + L2 LINE L2 2575 2735 -579 1273 205 126 110 chr6 150005520 150006299 -39273255 + LTR50 LTR ERVL 3 793 -2 1852 140 66 23 chr6 150006603 150006953 -39272601 - MLT1A1 LTR MaLR 0 365 1 2384 93 0 0 chr6 150007085 150007386 -39272168 - AluSq SINE Alu -12 301 1 23 68 0 0 chr6 150007961 150008005 -39271549 + AT_rich Low_complexity Low_complexity 1 44 0 2379 91 7 0 chr6 150008460 150008768 -39270786 + AluSg SINE Alu 1 310 0 335 322 27 13 chr6 150008975 150009124 -39270430 + L2 LINE L2 2938 3088 -225 21 36 0 0 chr6 150009247 150009275 -39270279 + AT_rich Low_complexity Low_complexity 1 28 0 1501 143 85 41 chr6 150009829 150010123 -39269431 + AluJo SINE Alu 1 307 -5 1765 139 7 14 chr6 150012736 150013031 -39266523 + AluJo SINE Alu 1 293 -19 2167 100 0 17 chr6 150013886 150014177 -39265377 + AluSc SINE Alu 1 286 -23 2126 94 0 14 chr6 150014502 150014799 -39264755 + AluSq SINE Alu 1 293 -20 241 289 210 18 chr6 150014810 150015017 -39264537 + MIR SINE MIR 1 250 -12 184 238 270 0 chr6 150015047 150015110 -39264444 + L2 LINE L2 3193 3272 0 584 175 73 0 chr6 150015248 150015385 -39264169 - L1MA10 LINE L1 -8 6326 6180 2018 206 60 29 chr6 150015430 150015949 -39263605 - L1ME1 LINE L1 -141 6025 5491 2186 96 0 13 chr6 150015976 150016279 -39263275 + AluSg SINE Alu 1 299 -11 594 256 10 44 chr6 150016279 150016482 -39263072 + L1ME3 LINE L1 5967 6162 0 826 160 0 0 chr6 150016594 150016725 -39262829 - FLAM_C SINE Alu -11 132 2 1876 120 58 0 chr6 150017021 150017295 -39262259 + AluSg SINE Alu 1 290 -20 180 152 0 0 chr6 150017676 150017709 -39261845 + CT-rich Low_complexity Low_complexity 2 34 0 354 323 78 92 chr6 150018391 150018827 -39260727 + L2 LINE L2 2835 3264 -8 1228 164 12 4 chr6 150019012 150019256 -39260298 + L1MB7 LINE L1 5642 5887 -291 1065 194 4 40 chr6 150019369 150019622 -39259932 + L1MB7 LINE L1 5893 6136 -48 231 179 0 0 chr6 150019622 150019661 -39259893 - Alu SINE Alu -12 290 252 992 137 0 13 chr6 150019665 150019818 -39259736 - AluJo SINE Alu -161 151 1 3363 126 68 24 chr6 150019833 150019861 -39259693 + LTR9 LTR ERV1 1 26 -586 1973 117 72 7 chr6 150019861 150020152 -39259402 + AluSx SINE Alu 1 310 -2 3363 126 68 24 chr6 150020152 150020709 -39258845 + LTR9 LTR ERV1 26 612 0 2344 90 3 0 chr6 150020797 150021098 -39258456 - AluSx SINE Alu -8 304 3 1597 161 3 28 chr6 150021282 150021410 -39258144 - AluJb SINE Alu -20 292 162 3535 126 66 3 chr6 150021410 150021983 -39257571 + MER4B LTR ERV1 1 609 -1 1597 161 3 28 chr6 150021983 150022145 -39257409 - AluJb SINE Alu -150 162 9 444 283 36 12 chr6 150022146 150022312 -39257242 + MIR SINE MIR 86 255 -7 2235 93 30 0 chr6 150022749 150023051 -39256503 + AluSx SINE Alu 1 311 -1 317 253 0 0 chr6 150024315 150024394 -39255160 + MLT1G1 LTR MaLR 1 79 -516 2237 123 131 11 chr6 150024394 150024776 -39254778 + MSTA LTR MaLR 1 428 0 636 242 198 18 chr6 150024821 150025268 -39254286 + MLT1G1 LTR MaLR 37 595 0 24 0 0 0 chr6 150025783 150025807 -39253747 + AT_rich Low_complexity Low_complexity 1 24 0 2151 113 0 3 chr6 150025817 150026108 -39253446 + AluSg SINE Alu 1 290 -20 2175 107 7 3 chr6 150026112 150026403 -39253151 + AluSg SINE Alu 1 292 -18 208 342 88 26 chr6 150027377 150027491 -39252063 + MIR3 SINE MIR 63 183 -25 2316 109 3 0 chr6 150027494 150027796 -39251758 - AluSx SINE Alu -9 303 1 1882 155 0 38 chr6 150027941 150028258 -39251296 - AluJo SINE Alu -7 305 1 24 0 0 0 chr6 150028416 150028440 -39251114 + AT_rich Low_complexity Low_complexity 1 24 0 1179 195 65 17 chr6 150028592 150028913 -39250641 - MSTD LTR MaLR 0 396 2 1528 204 58 14 chr6 150028973 150029321 -39250233 + MLT1A1 LTR MaLR 1 363 -2 389 325 123 75 chr6 150029378 150029633 -39249921 + L3 LINE CR1 1142 1426 -151 2371 53 0 3 chr6 150029633 150029933 -39249621 - AluY SINE Alu -11 300 2 389 325 123 75 chr6 150029933 150030092 -39249462 + L3 LINE CR1 1426 1576 -1 27 0 0 0 chr6 150031127 150031154 -39248400 + AT_rich Low_complexity Low_complexity 1 27 0 291 169 12 24 chr6 150032916 150032999 -39246555 + CT-rich Low_complexity Low_complexity 3 84 0 2204 85 11 0 chr6 150033554 150033859 -39245695 - AluSq SINE Alu 0 308 1 628 220 83 0 chr6 150033859 150033991 -39245563 - FRAM SINE Alu -14 162 20 1939 126 6 41 chr6 150034002 150034319 -39245235 - AluSx SINE Alu -6 306 1 209 342 0 53 chr6 150034451 150034527 -39245027 - L2 LINE L2 0 3272 3201 445 309 69 74 chr6 150034627 150035019 -39244535 + L2 LINE L2 2883 3272 0 543 219 62 56 chr6 150035599 150035716 -39243838 + LTR50 LTR ERVL 32 152 -643 2252 77 7 7 chr6 150035716 150036015 -39243539 + AluY SINE Alu 2 300 -11 543 219 62 56 chr6 150036015 150036075 -39243479 + LTR50 LTR ERVL 152 210 -585 812 253 73 4 chr6 150036320 150036581 -39242973 - LTR50 LTR ERVL -113 682 404 1817 154 26 7 chr6 150036866 150037217 -39242337 + THE1C LTR MaLR 5 420 -12 771 223 0 7 chr6 150037221 150037404 -39242150 + FRAM SINE Alu 1 46 0 33 43 0 0 chr6 150037533 150037580 -39241974 + AT_rich Low_complexity Low_complexity 1 47 0 2179 214 61 69 chr6 150038418 150038943 -39240611 + L1M4 LINE L1 780 1308 -5338 2258 123 3 0 chr6 150038943 150039253 -39240301 - AluJb SINE Alu -1 311 1 2179 214 61 69 chr6 150039253 150040075 -39239479 + L1M4 LINE L1 1308 2103 -4543 2221 124 0 0 chr6 150040187 150040486 -39239068 + AluSx SINE Alu 1 299 -13 267 255 89 43 chr6 150040486 150040721 -39238833 + L1M4 LINE L1 2306 2551 -4095 561 209 99 35 chr6 150041134 150041335 -39238219 - L1M4 LINE L1 -1678 4468 4255 549 268 80 29 chr6 150041421 150041660 -39237894 + L1ME LINE L1 5539 5789 -332 21 57 0 0 chr6 150042660 150042695 -39236859 + AT_rich Low_complexity Low_complexity 1 35 0 1632 136 58 0 chr6 150042739 150042996 -39236558 - AluJb SINE Alu -5 307 36 357 167 0 0 chr6 150044648 150044726 -39234828 + A-rich Low_complexity Low_complexity 1 78 0 386 318 144 15 chr6 150044763 150044958 -39234596 + MIR SINE MIR 35 254 -8 205 203 0 6 chr6 150045966 150046004 -39233550 - L2 LINE L2 -17 3296 3218 510 304 69 28 chr6 150046037 150046284 -39233270 + L2 LINE L2 3005 3261 -52 624 250 40 0 chr6 150046479 150046667 -39232887 + MER63A DNA MER1_type 13 210 0 1068 268 136 25 chr6 150048393 150048607 -39230947 - HsTC2 DNA Tc2 -1329 569 380 2117 176 29 58 chr6 150048607 150049124 -39230430 + MLT1D LTR MaLR 1 502 -3 1068 268 136 25 chr6 150049124 150049395 -39230159 - HsTC2 DNA Tc2 -1518 380 30 537 118 0 0 chr6 150049395 150049471 -39230083 + FLAM_A SINE Alu 43 118 -24 2166 129 3 19 chr6 150049854 150050171 -39229383 - AluSx SINE Alu 0 312 1 198 285 65 70 chr6 150050224 150050424 -39229130 + L2 LINE L2 2607 2805 -509 320 365 26 19 chr6 150050724 150050880 -39228674 + L2 LINE L2 2886 3042 -230 767 147 31 0 chr6 150051024 150051153 -39228401 - FLAM_C SINE Alu 0 133 1 408 244 273 12 chr6 150051173 150051345 -39228209 + MIR SINE MIR 43 259 -3 236 209 100 64 chr6 150051589 150051699 -39227855 + MIR SINE MIR 149 262 0 976 164 13 6 chr6 150051891 150052050 -39227504 + FRAM SINE Alu 1 159 -17 225 154 0 0 chr6 150052367 150052406 -39227148 + A-rich Low_complexity Low_complexity 1 39 0 24 53 0 0 chr6 150053877 150053915 -39225639 + AT_rich Low_complexity Low_complexity 1 38 0 585 294 68 6 chr6 150054221 150054398 -39225156 - MIR SINE MIR -36 226 39 424 297 91 6 chr6 150054670 150054845 -39224709 + MIR SINE MIR 60 249 -13 1829 168 13 3 chr6 150055643 150055946 -39223608 - AluSx SINE Alu 0 312 7 25 0 0 0 chr6 150056187 150056212 -39223342 + AT_rich Low_complexity Low_complexity 1 25 0 426 20 0 0 chr6 150057035 150057086 -39222468 + (TG)n Simple_repeat Simple_repeat 2 52 0 2293 105 0 0 chr6 150057246 150057541 -39222013 - AluSx SINE Alu -17 295 1 2140 138 3 0 chr6 150057971 150058283 -39221271 - AluSq SINE Alu 0 313 1 1835 154 39 41 chr6 150058782 150058803 -39220751 - L1MB4 LINE L1 -31 6149 6129 1711 80 0 0 chr6 150058803 150059015 -39220539 - AluSc SINE Alu -22 287 76 1835 154 39 41 chr6 150059015 150059429 -39220125 - L1MB4 LINE L1 -51 6129 5715 2052 106 0 7 chr6 150059992 150060296 -39219258 - AluSq SINE Alu 0 302 1 1008 147 4 6 chr6 150060670 150060841 -39218713 - MER45A DNA AcHobo -3 175 5 238 206 32 32 chr6 150061359 150061422 -39218132 - LTR16C LTR ERVL -241 250 188 1100 266 66 70 chr6 150061608 150062190 -39217364 - L2 LINE L2 -24 3289 2704 227 111 0 22 chr6 150062454 150062499 -39217055 + (TTTTC)n Simple_repeat Simple_repeat 3 46 0 2138 126 0 0 chr6 150063545 150063831 -39215723 - AluSx SINE Alu -26 286 1 2215 82 0 11 chr6 150064466 150064747 -39214807 - AluSq SINE Alu -35 278 1 389 294 64 25 chr6 150065705 150066141 -39213413 - L1M4 LINE L1 -1542 4604 4152 2562 55 3 0 chr6 150066947 150067277 -39212277 - L1PA6 LINE L1 -29 6125 5795 976 114 0 158 chr6 150067351 150067579 -39211975 + 7SK RNA RNA 1 192 -1 2277 109 0 0 chr6 150067604 150067898 -39211656 - AluSx SINE Alu -17 295 2 231 191 0 0 chr6 150067908 150067955 -39211599 - L1M4 LINE L1 -2302 3844 3798 412 324 32 59 chr6 150068039 150068412 -39211142 + L1MC4a LINE L1 4877 5239 -907 911 288 140 19 chr6 150068445 150069032 -39210522 + L1MC4a LINE L1 5259 5916 -1892 277 125 0 71 chr6 150069102 150069149 -39210405 + Charlie1 DNA MER1_type 57 101 -2660 2292 102 3 0 chr6 150069149 150069443 -39210111 + AluSq SINE Alu 1 295 -18 6188 132 7 8 chr6 150069456 150070919 -39208635 + L1PB1 LINE L1 4690 6151 0 2840 170 14 2 chr6 150072921 150073415 -39206139 + MER45B DNA AcHobo 534 1033 -7 353 302 128 12 chr6 150075816 150075988 -39203566 + MIR SINE MIR 11 202 -60 2416 88 0 0 chr6 150076665 150076970 -39202584 - AluSq SINE Alu -8 305 1 1135 88 27 0 chr6 150076971 150077119 -39202435 - L1PA8 LINE L1 0 6172 6021 24 0 0 0 chr6 150077688 150077712 -39201842 + AT_rich Low_complexity Low_complexity 1 24 0 215 313 10 10 chr6 150078220 150078316 -39201238 + GA-rich Low_complexity Low_complexity 5 100 0 313 306 16 40 chr6 150079261 150079385 -39200169 - MIR SINE MIR 0 262 142 2264 119 0 0 chr6 150079904 150080206 -39199348 + AluSg SINE Alu 1 302 -8 762 278 65 16 chr6 150080489 150080734 -39198820 + MIR SINE MIR 5 261 -1 201 267 188 10 chr6 150081307 150081408 -39198146 + L2 LINE L2 2550 2668 -646 208 281 141 23 chr6 150081476 150081604 -39197950 - L2 LINE L2 0 3313 3171 195 301 65 11 chr6 150081651 150081744 -39197810 + MIR SINE MIR 110 207 -55 23 54 0 0 chr6 150082334 150082371 -39197183 + AT_rich Low_complexity Low_complexity 1 37 0 505 344 72 46 chr6 150082920 150083182 -39196372 + L3 LINE CR1 1054 1322 -255 459 330 37 0 chr6 150083310 150083501 -39196053 + L3 LINE CR1 1305 1502 -75 255 167 0 0 chr6 150083510 150083552 -39196002 + L1PBa LINE L1 157 198 -6665 * 5949 124 5 0 chr6 150083548 150084410 -39195144 + L1PBa LINE L1 995 1860 -5003 2113 117 3 0 chr6 150084412 150084737 -39194817 + AluSp SINE Alu 1 326 0 2526 82 9 0 chr6 150084737 150085054 -39194500 + L1PB1 LINE L1 5832 6151 0 22 0 0 0 chr6 150085054 150085076 -39194478 + AT_rich Low_complexity Low_complexity 1 22 0 247 315 9 63 chr6 150085991 150086102 -39193452 - L2 LINE L2 -263 3050 2946 256 336 20 20 chr6 150086582 150086728 -39192826 + LTR16C LTR ERVL 346 491 0 462 258 16 119 chr6 150086728 150086781 -39192773 - MIR SINE MIR -60 202 145 2015 113 3 30 chr6 150086781 150087082 -39192472 - AluSg SINE Alu 0 310 18 462 258 16 119 chr6 150087082 150087222 -39192332 - MIR SINE MIR -117 145 29 898 164 4 91 chr6 150087594 150087826 -39191728 - MER96B DNA MER1_type? -19 398 187 814 212 36 6 chr6 150088360 150088525 -39191029 + AluJo SINE Alu 121 290 -22 2170 109 0 3 chr6 150088530 150088823 -39190731 + AluSx SINE Alu 1 292 -20 781 190 0 0 chr6 150088837 150088953 -39190601 - FLAM_C SINE Alu -25 118 3 317 0 0 65 chr6 150088955 150089001 -39190553 + (A)n Simple_repeat Simple_repeat 1 43 0 2020 149 3 0 chr6 150090517 150090813 -39188741 + AluSx SINE Alu 3 299 -13 3742 155 62 9 chr6 150090859 150091498 -39188056 + L1MC1 LINE L1 5632 6309 -24 2075 140 0 3 chr6 150091498 150091798 -39187756 + AluJb SINE Alu 1 299 -13 3742 155 62 9 chr6 150091798 150091824 -39187730 + L1MC1 LINE L1 6309 6332 -1 212 0 36 0 chr6 150092368 150092396 -39187158 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2118 133 0 13 chr6 150092422 150092722 -39186832 - AluSx SINE Alu -16 296 1 265 300 106 41 chr6 150093694 150093864 -39185690 - MIR SINE MIR -61 201 21 286 194 92 53 chr6 150093973 150094091 -39185463 + MIR SINE MIR 59 190 -18 534 115 138 0 chr6 150095268 150095355 -39184199 - AluJ/FRAM SINE Alu 0 312 214 1153 76 101 13 chr6 150095393 150095551 -39184003 + AluSc SINE Alu 121 292 -17 610 193 88 0 chr6 150095551 150095665 -39183889 - AluJo/FLAM SINE Alu -178 124 1 2270 104 30 0 chr6 150096012 150096310 -39183244 - AluSq SINE Alu -6 307 1 2217 102 0 0 chr6 150096895 150097179 -39182375 + AluSx SINE Alu 6 289 -23 1456 111 0 0 chr6 150097179 150097377 -39182177 + AluSg/x SINE Alu 109 306 -6 2342 104 0 0 chr6 150097928 150098226 -39181328 + AluSg SINE Alu 2 299 -11 255 125 0 0 chr6 150098442 150098482 -39181072 + (GGGAA)n Simple_repeat Simple_repeat 4 43 0 523 232 8 24 chr6 150098739 150098864 -39180690 + MER63A DNA MER1_type 88 210 0 676 303 32 99 chr6 150098892 150099328 -39180226 + L2 LINE L2 2864 3270 -2 2123 126 0 0 chr6 150099475 150099768 -39179786 - AluSx SINE Alu -19 293 1 1979 142 7 0 chr6 150100020 150100309 -39179245 + AluJb SINE Alu 1 291 -21 230 368 44 0 chr6 150100525 150100639 -39178915 - MIR SINE MIR -140 122 4 203 298 139 63 chr6 150101259 150101417 -39178137 - MIR SINE MIR -10 252 83 726 242 18 24 chr6 150101729 150101894 -39177660 + MER5B DNA MER1_type 1 164 -14 379 111 28 56 chr6 150102211 150102283 -39177271 + MER41B LTR ERV1 478 547 -88 209 59 59 0 chr6 150102283 150102317 -39177237 + GA-rich Low_complexity Low_complexity 3 38 0 234 0 0 0 chr6 150104121 150104147 -39175407 + (TA)n Simple_repeat Simple_repeat 2 27 0 421 321 50 14 chr6 150104725 150104865 -39174689 + Charlie8 DNA MER1_type 135 279 -2138 344 155 14 0 chr6 150105454 150105525 -39174029 + GA-rich Low_complexity Low_complexity 3 74 0 22 0 0 0 chr6 150106845 150106867 -39172687 + AT_rich Low_complexity Low_complexity 1 22 0 33000 109 10 55 chr6 150107384 150113819 -39165735 - L1PA7 LINE L1 0 6154 12 2011 111 57 0 chr6 150114050 150114330 -39165224 - AluSq SINE Alu -17 296 1 524 307 11 11 chr6 150114391 150114570 -39164984 + MIR SINE MIR 72 250 -12 1200 299 91 43 chr6 150114816 150115100 -39164454 - L2 LINE L2 -1 3312 3043 2109 131 0 7 chr6 150115100 150115405 -39164149 + AluSx SINE Alu 1 303 -9 1200 299 91 43 chr6 150115405 150115643 -39163911 - L2 LINE L2 -270 3043 2818 1529 202 0 23 chr6 150115643 150115945 -39163609 - AluJo SINE Alu -17 295 1 1200 299 91 43 chr6 150115945 150116382 -39163172 - L2 LINE L2 -495 2818 2248 994 115 0 0 chr6 150116384 150116523 -39163031 + FRAM SINE Alu 38 176 0 371 271 125 35 chr6 150117192 150117568 -39161986 + L2 LINE L2 2127 2536 -778 2116 137 10 0 chr6 150117607 150117906 -39161648 - AluSx SINE Alu -10 302 1 268 288 15 15 chr6 150118159 150118225 -39161329 - MER91B DNA MER1_type -124 66 1 1074 183 0 0 chr6 150120172 150120347 -39159207 + AluJb SINE Alu 137 311 -1 26 0 0 0 chr6 150120902 150120928 -39158626 + AT_rich Low_complexity Low_complexity 1 26 0 267 31 0 0 chr6 150121341 150121373 -39158181 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2225 100 0 0 chr6 150121373 150121653 -39157901 - AluSx SINE Alu -32 280 1 311 154 22 22 chr6 150121845 150121936 -39157618 + (TA)n Simple_repeat Simple_repeat 1 91 0 2746 107 8 0 chr6 150122704 150123070 -39156484 - L1PA13 LINE L1 -19 6144 5776 2061 134 3 10 chr6 150123529 150123842 -39155712 + AluJo SINE Alu 2 312 0 267 280 110 17 chr6 150123955 150124073 -39155481 + L2 LINE L2 3133 3261 -11 1986 103 0 26 chr6 150124093 150124366 -39155188 + AluSg SINE Alu 39 304 -6 503 309 108 0 chr6 150125144 150125338 -39154216 + MIR SINE MIR 46 260 -2 311 333 44 38 chr6 150125407 150125590 -39153964 - MIR SINE MIR -50 212 29 606 202 8 0 chr6 150125855 150125979 -39153575 + MER3 DNA MER1_type 37 161 -48 36 23 0 0 chr6 150126019 150126062 -39153492 + AT_rich Low_complexity Low_complexity 1 43 0 1288 155 4 11 chr6 150126101 150126366 -39153188 + MER3 DNA MER1_type 2256 2518 0 2009 125 4 0 chr6 150126367 150126639 -39152915 + AluSx SINE Alu 18 290 -22 192 152 0 0 chr6 150126640 150126673 -39152881 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 258 216 34 11 chr6 150126717 150126805 -39152749 + MER3 DNA MER1_type 2496 2585 0 192 316 123 9 chr6 150127069 150127180 -39152374 - L2 LINE L2 -1 3312 3189 481 276 82 24 chr6 150127180 150127350 -39152204 + MER5A DNA MER1_type 1 180 -9 286 287 173 30 chr6 150127873 150128075 -39151479 - L2 LINE L2 -687 2627 2397 704 149 0 0 chr6 150128642 150128749 -39150805 + FLAM_A SINE Alu 26 132 -10 335 111 0 0 chr6 150128796 150128859 -39150695 + L1MA7 LINE L1 6220 6282 -9 198 0 0 0 chr6 150129445 150129467 -39150087 + (A)n Simple_repeat Simple_repeat 1 22 0 429 268 21 103 chr6 150129946 150130165 -39149389 + MIR SINE MIR 1 202 -60 25 0 0 0 chr6 150130212 150130237 -39149317 + AT_rich Low_complexity Low_complexity 1 25 0 314 274 123 92 chr6 150130272 150130400 -39149154 - L2 LINE L2 -11 3261 3138 743 70 31 0 chr6 150130400 150130528 -39149026 + (TAGA)n Simple_repeat Simple_repeat 4 135 0 314 274 123 92 chr6 150130528 150130823 -39148731 - L2 LINE L2 -134 3138 2825 301 293 80 53 chr6 150131040 150131228 -39148326 - L2 LINE L2 -557 2757 2565 205 326 34 11 chr6 150131412 150131501 -39148053 - MIR3 SINE MIR -7 201 111 2284 101 7 0 chr6 150131759 150132067 -39147487 + AluSg SINE Alu 1 310 0 189 0 0 0 chr6 150132283 150132304 -39147250 + (GAGAA)n Simple_repeat Simple_repeat 3 23 0 243 137 0 20 chr6 150132307 150132358 -39147196 - MER112 DNA MER1_type -117 143 94 835 130 0 30 chr6 150132364 150132495 -39147059 - FLAM_C SINE Alu -16 127 1 201 74 0 0 chr6 150132512 150132539 -39147015 + (TG)n Simple_repeat Simple_repeat 2 28 0 2311 80 0 3 chr6 150132592 150132880 -39146674 + AluSq SINE Alu 1 287 -26 1496 190 84 9 chr6 150133205 150133552 -39146002 + MER63B DNA MER1_type 4 376 -60 192 312 10 96 chr6 150133573 150133772 -39145782 + L2 LINE L2 2248 2429 -885 22 0 0 0 chr6 150134266 150134288 -39145266 + AT_rich Low_complexity Low_complexity 1 22 0 1837 172 0 14 chr6 150135043 150135334 -39144220 + AluJb SINE Alu 1 287 -25 22 0 0 0 chr6 150135339 150135361 -39144193 + AT_rich Low_complexity Low_complexity 1 22 0 427 323 0 23 chr6 150135435 150135565 -39143989 + MER5A DNA MER1_type 49 175 -14 1300 112 98 0 chr6 150135565 150135770 -39143784 - MER30 DNA MER1_type 0 230 6 567 188 65 32 chr6 150135841 150135995 -39143559 + MER58C DNA MER1_type 56 214 -1 306 0 0 0 chr6 150137436 150137470 -39142084 + (T)n Simple_repeat Simple_repeat 1 34 0 310 300 72 97 chr6 150137920 150138293 -39141261 - L1M2 LINE L1 -5998 851 488 285 135 0 0 chr6 150138361 150138413 -39141141 + (TCC)n Simple_repeat Simple_repeat 3 54 0 42 20 0 0 chr6 150138579 150138628 -39140926 + GC_rich Low_complexity Low_complexity 1 49 0 198 0 0 0 chr6 150140039 150140061 -39139493 + (T)n Simple_repeat Simple_repeat 1 22 0 28 0 0 0 chr6 150140146 150140174 -39139380 + GC_rich Low_complexity Low_complexity 1 28 0 535 193 82 58 chr6 150140877 150141048 -39138506 - MIR3 SINE MIR -19 189 15 207 0 0 0 chr6 150141355 150141378 -39138176 + (T)n Simple_repeat Simple_repeat 1 23 0 428 311 134 52 chr6 150143226 150143592 -39135962 + L2 LINE L2 2877 3272 0 336 253 45 170 chr6 150144458 150144723 -39134831 - MIR SINE MIR -13 249 18 29 98 0 0 chr6 150145074 150145166 -39134388 + AT_rich Low_complexity Low_complexity 1 92 0 2314 115 3 0 chr6 150145530 150145842 -39133712 - AluSq SINE Alu 0 313 1 217 283 177 26 chr6 150147577 150147690 -39131864 + MIR SINE MIR 85 214 -48 1711 178 19 25 chr6 150147811 150148125 -39131429 - AluJo SINE Alu 0 312 1 202 353 88 7 chr6 150149742 150149878 -39129676 - MIR SINE MIR -100 162 16 24 32 0 0 chr6 150150565 150150596 -39128958 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr6 150155035 150155070 -39124484 + AT_rich Low_complexity Low_complexity 1 35 0 595 167 6 101 chr6 150155144 150155193 -39124361 + MER103 DNA DNA 15 67 -99 695 195 0 16 chr6 150155193 150155316 -39124238 + FLAM_A SINE Alu 1 121 -12 595 167 6 101 chr6 150155316 150155434 -39124120 + MER103 DNA DNA 67 166 0 190 28 28 56 chr6 150156473 150156509 -39123045 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 26 64 0 0 chr6 150157778 150157825 -39121729 + AT_rich Low_complexity Low_complexity 1 47 0 2221 99 6 16 chr6 150157829 150158142 -39121412 + AluY SINE Alu 1 310 -1 788 303 4 51 chr6 150159292 150159394 -39120160 - MIR SINE MIR -8 254 149 2498 59 3 7 chr6 150159394 150159700 -39119854 - AluSp SINE Alu -8 305 1 788 303 4 51 chr6 150159700 150159851 -39119703 - MIR SINE MIR -113 149 13 211 274 0 0 chr6 150159963 150160014 -39119540 - L2 LINE L2 0 3313 3263 285 75 0 0 chr6 150160415 150160455 -39119099 + (TGG)n Simple_repeat Simple_repeat 1 40 0 1771 169 0 14 chr6 150161339 150161635 -39117919 - AluSx SINE Alu -20 292 1 1638 95 163 12 chr6 150161858 150162110 -39117444 + AluSg1 SINE Alu 1 290 -19 23 0 0 0 chr6 150162262 150162285 -39117269 + AT_rich Low_complexity Low_complexity 1 23 0 1731 162 17 34 chr6 150162820 150162956 -39116598 + AluJo SINE Alu 1 138 -174 2550 53 0 3 chr6 150162956 150163282 -39116272 + AluY SINE Alu 1 325 0 1731 162 17 34 chr6 150163282 150163440 -39116114 + AluJo SINE Alu 138 291 -21 2188 125 0 0 chr6 150163448 150163745 -39115809 + AluSg SINE Alu 1 297 -13 2093 125 28 0 chr6 150164770 150165057 -39114497 - AluSx SINE Alu -15 297 3 2243 108 3 13 chr6 150165095 150165409 -39114145 - AluY SINE Alu 0 311 1 2028 133 7 3 chr6 150165411 150165713 -39113841 - AluJo SINE Alu -9 303 1 246 250 68 0 chr6 150165713 150165845 -39113709 - L1MC5 LINE L1 -179 7782 7642 635 149 89 36 chr6 150165961 150166129 -39113425 + MER3 DNA MER1_type 1 130 -79 503 223 0 9 chr6 150166129 150166254 -39113300 - L1MC4a LINE L1 -1048 6760 6652 2082 153 0 0 chr6 150166266 150166566 -39112988 - AluSx SINE Alu -12 300 1 297 0 0 0 chr6 150169257 150169290 -39110264 + (T)n Simple_repeat Simple_repeat 1 33 0 1597 175 38 10 chr6 150170632 150170924 -39108630 + AluJo SINE Alu 1 300 -12 1603 162 30 30 chr6 150171025 150171322 -39108232 + AluJo SINE Alu 1 297 -15 405 321 9 42 chr6 150172447 150172659 -39106895 + MIR SINE MIR 49 253 -9 1684 141 44 62 chr6 150173222 150173357 -39106197 + MER2 DNA MER2_type 1 137 -208 559 192 0 8 chr6 150173357 150173477 -39106077 - L1PB4 LINE L1 0 6156 6038 1684 141 44 62 chr6 150173477 150173681 -39105873 + MER2 DNA MER2_type 137 334 -11 352 308 69 18 chr6 150173854 150174060 -39105494 + MIR SINE MIR 16 228 -34 1927 148 0 7 chr6 150174130 150174421 -39105133 + AluJb SINE Alu 13 301 -11 26 50 0 0 chr6 150175600 150175640 -39103914 + AT_rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chr6 150175782 150175814 -39103740 + AT_rich Low_complexity Low_complexity 1 32 0 392 206 115 48 chr6 150176582 150176747 -39102807 - LTR33 LTR ERVL -246 275 100 343 192 26 0 chr6 150177113 150177191 -39102363 + MIR SINE MIR 66 145 -63 208 191 0 0 chr6 150177794 150177836 -39101718 - MIR3 SINE MIR -9 199 158 350 289 10 86 chr6 150177875 150177905 -39101649 + MIR SINE MIR 20 51 -211 831 147 0 22 chr6 150177905 150178041 -39101513 - FLAM_C SINE Alu 0 133 1 350 289 10 86 chr6 150178041 150178207 -39101347 + MIR SINE MIR 51 201 -61 661 122 0 0 chr6 150178690 150178788 -39100766 + FLAM_A SINE Alu 32 129 -13 25 0 0 0 chr6 150178903 150178928 -39100626 + AT_rich Low_complexity Low_complexity 1 25 0 2114 134 0 13 chr6 150178944 150179251 -39100303 + AluSx SINE Alu 1 303 -9 434 271 7 21 chr6 150179312 150179456 -39100098 - L2 LINE L2 -1 3312 3171 1316 288 163 33 chr6 150179628 150180107 -39099447 + L2 LINE L2 1177 1593 -1721 1476 146 8 46 chr6 150180107 150180368 -39099186 - AluJb SINE Alu 0 312 62 1316 288 163 33 chr6 150180368 150181118 -39098436 + L2 LINE L2 1593 2565 -749 335 277 78 21 chr6 150181896 150182037 -39097517 - MER5A DNA MER1_type -26 163 15 351 0 0 0 chr6 150182407 150182446 -39097108 + (CA)n Simple_repeat Simple_repeat 2 40 0 232 152 65 0 chr6 150183191 150183237 -39096317 - L2 LINE L2 0 3272 3224 549 126 0 23 chr6 150183588 150183675 -39095879 - Alu SINE Alu -4 306 222 180 385 0 0 chr6 150183815 150183867 -39095687 + L2 LINE L2 3205 3256 -16 216 300 100 15 chr6 150183906 150184036 -39095518 + MIR3 SINE MIR 57 197 -11 2343 125 26 38 chr6 150184065 150184621 -39094933 + MER51A LTR ERV1 1 634 0 1158 202 9 14 chr6 150184965 150185188 -39094366 + MER58A DNA MER1_type 1 222 -2 2342 94 13 0 chr6 150185287 150185596 -39093958 - AluSp SINE Alu 0 313 1 259 188 16 31 chr6 150185679 150185743 -39093811 + MER116 DNA Mariner 18 80 0 656 232 11 44 chr6 150185809 150185990 -39093564 + MER5B DNA MER1_type 1 175 -3 1024 183 11 0 chr6 150186101 150186287 -39093267 - MER5A DNA MER1_type -1 188 1 202 302 0 0 chr6 150186308 150186361 -39093193 + L2 LINE L2 3218 3270 -2 357 208 52 0 chr6 150186395 150186472 -39093082 - L2 LINE L2 -49 3264 3184 2363 97 3 0 chr6 150187354 150187652 -39091902 - AluSx SINE Alu -13 299 1 183 129 0 0 chr6 150188567 150188598 -39090956 + (A)n Simple_repeat Simple_repeat 1 31 0 2066 135 7 3 chr6 150189040 150189336 -39090218 + AluSx SINE Alu 1 297 -15 387 41 0 0 chr6 150189491 150189540 -39090014 + (TG)n Simple_repeat Simple_repeat 2 50 0 1835 140 4 0 chr6 150189540 150189811 -39089743 - AluJb SINE Alu -24 288 17 2287 102 3 0 chr6 150189907 150190201 -39089353 + AluSq SINE Alu 1 295 -18 208 135 27 0 chr6 150190349 150190386 -39089168 + MIR SINE MIR 93 130 -78 254 166 10 0 chr6 150190974 150191037 -39088517 - MLT1H LTR MaLR -23 526 484 525 264 39 17 chr6 150191112 150191338 -39088216 - MLT1H LTR MaLR -280 269 3 946 180 0 0 chr6 150191956 150192130 -39087424 - AluJb SINE Alu 0 309 136 225 154 0 0 chr6 150192312 150192351 -39087203 + (CACG)n Simple_repeat Simple_repeat 2 40 0 1690 224 92 46 chr6 150192727 150193313 -39086241 + MLT1E2 LTR MaLR 1 613 -13 616 148 13 20 chr6 150193539 150193688 -39085866 + CT-rich Low_complexity Low_complexity 4 151 0 1903 180 0 0 chr6 150194054 150194354 -39085200 - AluJo SINE Alu -11 301 2 976 184 0 12 chr6 150194454 150194622 -39084932 + FRAM SINE Alu 1 166 0 879 150 0 0 chr6 150194947 150195074 -39084480 + FLAM_C SINE Alu 1 127 -16 2386 90 0 0 chr6 150195165 150195465 -39084089 - AluSq SINE Alu -13 300 1 461 240 94 111 chr6 150196139 150196202 -39083352 - LTR16A1 LTR ERVL -3 454 391 539 86 0 12 chr6 150196202 150196283 -39083271 - MADE1 DNA Mariner 0 80 1 461 240 94 111 chr6 150196283 150196581 -39082973 - LTR16A1 LTR ERVL -66 391 133 26 30 0 0 chr6 150198412 150198445 -39081109 + AT_rich Low_complexity Low_complexity 1 33 0 2055 128 35 0 chr6 150198549 150198838 -39080716 + AluSg SINE Alu 1 299 -11 2132 117 16 3 chr6 150198844 150199151 -39080403 + AluSx SINE Alu 1 311 -1 654 79 0 0 chr6 150199154 150199243 -39080311 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 367 243 111 83 chr6 150199586 150199919 -39079635 + L1ME4a LINE L1 5484 5825 -296 1562 193 0 31 chr6 150199919 150200209 -39079345 + AluJo SINE Alu 1 281 -31 367 243 111 83 chr6 150200209 150200222 -39079332 + L1ME4a LINE L1 5825 5836 -285 213 39 0 0 chr6 150200224 150200250 -39079304 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 1983 157 3 0 chr6 150200645 150200945 -39078609 + AluSx SINE Alu 1 301 -11 1694 185 17 7 chr6 150202106 150202404 -39077150 + AluJo SINE Alu 1 301 -11 1520 195 54 43 chr6 150202561 150203003 -39076551 + MER39 LTR ERV1 67 707 0 2112 104 42 0 chr6 150203166 150203454 -39076100 + AluSx SINE Alu 1 300 -12 294 133 17 17 chr6 150203531 150203591 -39075963 + MER39 LTR ERV1 597 656 -51 4245 76 11 0 chr6 150203594 150204133 -39075421 - MER41A LTR ERV1 -9 545 1 256 159 23 0 chr6 150204302 150204346 -39075208 + Tigger7 DNA MER2_type 1 45 -294 1597 113 4 23 chr6 150204350 150204593 -39074961 + Tigger7 DNA MER2_type 2237 2476 -11 5576 70 43 26 chr6 150204593 150205360 -39074194 + LTR17 LTR ERV1 1 780 0 1597 113 4 23 chr6 150205360 150205372 -39074182 + Tigger7 DNA MER2_type 2476 2487 0 317 295 0 36 chr6 150205832 150205879 -39073675 + MIR SINE MIR 114 161 -101 2284 92 7 3 chr6 150205879 150206195 -39073359 + AluSp SINE Alu 1 317 0 317 295 0 36 chr6 150206195 150206285 -39073269 + MIR SINE MIR 161 247 -15 848 95 0 16 chr6 150207094 150207220 -39072334 - LTR7 LTR ERV1 0 450 327 231 114 0 0 chr6 150207596 150207631 -39071923 + (TG)n Simple_repeat Simple_repeat 1 35 0 182 250 0 0 chr6 150209513 150209553 -39070001 + MER5B DNA MER1_type 1 40 -138 182 143 0 0 chr6 150210540 150210568 -39068986 - MER5B DNA MER1_type -122 56 29 3725 154 8 29 chr6 150210624 150211273 -39068281 - MER41B LTR ERV1 0 635 1 192 336 133 18 chr6 150211462 150211575 -39067979 + L2 LINE L2 3142 3267 -5 2492 106 0 57 chr6 150212385 150212771 -39066783 + THE1B LTR MaLR 1 364 0 2198 116 16 7 chr6 150213246 150213549 -39066005 + AluSx SINE Alu 1 306 -6 31 0 0 0 chr6 150214478 150214509 -39065045 + AT_rich Low_complexity Low_complexity 1 31 0 791 241 103 56 chr6 150214893 150215213 -39064341 - MER58B DNA MER1_type -4 337 3 25 31 0 0 chr6 150215611 150215643 -39063911 + AT_rich Low_complexity Low_complexity 1 32 0 238 287 75 0 chr6 150215840 150215934 -39063620 - MIR SINE MIR -110 152 52 1782 189 0 0 chr6 150215945 150216236 -39063318 + AluSx SINE Alu 9 299 -13 243 0 0 0 chr6 150216335 150216362 -39063192 + (TTG)n Simple_repeat Simple_repeat 1 27 0 756 153 191 60 chr6 150217714 150217793 -39061761 - MER96B DNA MER1_type? -174 243 176 423 0 0 0 chr6 150217793 150217840 -39061714 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1578 172 0 54 chr6 150217841 150218137 -39061417 - AluJb SINE Alu -32 280 1 756 153 191 60 chr6 150218137 150218180 -39061374 - MER96B DNA MER1_type? -241 176 140 2469 50 0 20 chr6 150218180 150218480 -39061074 + AluY SINE Alu 1 294 -17 756 153 191 60 chr6 150218480 150218569 -39060985 - MER96B DNA MER1_type? -277 140 1 1241 170 76 125 chr6 150218687 150218797 -39060757 + MLT2D LTR ERVL 20 134 -386 1703 171 7 0 chr6 150218797 150219078 -39060476 - AluJo SINE Alu -23 289 7 1241 170 76 125 chr6 150219078 150219437 -39060117 + MLT2D LTR ERVL 134 520 0 335 323 47 30 chr6 150219767 150220002 -39059552 - L2 LINE L2 0 3313 3075 1628 213 74 3 chr6 150220201 150220539 -39059015 - MLT1A1 LTR MaLR -2 363 2 249 312 26 0 chr6 150220700 150220777 -39058777 + L2 LINE L2 3193 3271 -1 858 182 5 79 chr6 150221360 150221563 -39057991 + MER53 DNA DNA 2 189 0 2228 13 0 0 chr6 150222029 150222266 -39057288 + AluYa5 SINE Alu 1 237 -74 180 0 0 0 chr6 150222271 150222291 -39057263 + (A)n Simple_repeat Simple_repeat 1 20 0 222 289 41 82 chr6 150222852 150222900 -39056654 + L2 LINE L2 3192 3236 -77 2129 131 7 101 chr6 150222900 150223217 -39056337 - MLT1B LTR MaLR -2 388 120 1771 167 48 3 chr6 150223217 150223511 -39056043 - AluJo SINE Alu -5 307 1 2129 131 7 101 chr6 150223511 150223621 -39055933 - MLT1B LTR MaLR -270 120 1 222 289 41 82 chr6 150223621 150223669 -39055885 + L2 LINE L2 3236 3284 -29 1585 165 3 46 chr6 150225428 150225731 -39053823 - AluJb SINE Alu -22 290 1 2061 93 7 65 chr6 150227269 150227579 -39051975 + AluSx SINE Alu 3 294 -18 282 151 19 38 chr6 150228768 150228821 -39050733 - L2 LINE L2 -18 3295 3244 1817 143 48 17 chr6 150229136 150229430 -39050124 - AluJb SINE Alu -9 303 1 1308 166 13 17 chr6 150229580 150229815 -39049739 - AluJo SINE Alu 0 312 79 642 322 31 28 chr6 150229937 150230192 -39049362 + MIR SINE MIR 7 262 0 249 57 0 0 chr6 150230384 150230419 -39049135 + (TTTTA)n Simple_repeat Simple_repeat 5 39 0 2152 118 0 0 chr6 150230422 150230710 -39048844 - AluSx SINE Alu -24 288 1 2238 104 17 0 chr6 150231099 150231398 -39048156 - AluSg SINE Alu -6 304 1 331 353 90 37 chr6 150232410 150232710 -39046844 - L2 LINE L2 -31 3241 2926 285 119 0 0 chr6 150232852 150232894 -39046660 - 5S rRNA rRNA -79 42 1 4939 128 29 52 chr6 150233364 150233947 -39045607 + L1PB3 LINE L1 4872 5467 -687 309 53 0 0 chr6 150233947 150233985 -39045569 - U2 snRNA snRNA -150 38 1 4939 128 29 52 chr6 150233985 150234300 -39045254 + L1PB3 LINE L1 5467 5788 -366 2215 89 12 55 chr6 150234300 150234627 -39044927 + AluSq SINE Alu 1 313 0 4939 128 29 52 chr6 150234627 150235004 -39044550 + L1PB3 LINE L1 5788 6151 -3 21 0 0 0 chr6 150235647 150235668 -39043886 + AT_rich Low_complexity Low_complexity 1 21 0 1324 72 0 11 chr6 150235764 150235944 -39043610 + L1PA8 LINE L1 5995 6172 0 2522 60 0 16 chr6 150236086 150236400 -39043154 - AluSg SINE Alu -1 309 1 329 260 55 24 chr6 150239695 150239822 -39039732 + MIR SINE MIR 79 209 -53 21 0 0 0 chr6 150241029 150241050 -39038504 + AT_rich Low_complexity Low_complexity 1 21 0 31 68 0 0 chr6 150241614 150241673 -39037881 + AT_rich Low_complexity Low_complexity 1 59 0 1928 125 35 10 chr6 150241913 150242202 -39037352 - AluSx SINE Alu -16 296 1 205 286 18 0 chr6 150244129 150244185 -39035369 + GA-rich Low_complexity Low_complexity 1 57 0 2268 110 7 0 chr6 150244845 150245155 -39034399 + AluSx SINE Alu 1 312 0 189 294 0 44 chr6 150245177 150245245 -39034309 - L2 LINE L2 -3 3269 3205 314 248 80 18 chr6 150245486 150245599 -39033955 - L1ME4a LINE L1 -18 6103 5984 * 324 336 79 7 chr6 150245595 150245735 -39033819 - L1MC4a LINE L1 -1896 5912 5763 503 293 45 50 chr6 150245776 150245860 -39033694 - L1MC4a LINE L1 -436 5685 5602 183 42 0 0 chr6 150245860 150245884 -39033670 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 503 293 45 50 chr6 150245884 150246199 -39033355 - L1MC4a LINE L1 -519 5602 5288 2084 129 13 0 chr6 150246244 150246547 -39033007 + AluSx SINE Alu 1 307 -5 513 332 109 22 chr6 150247044 150247547 -39032007 + L2 LINE L2 1615 2161 -1153 318 26 0 0 chr6 150247934 150247973 -39031581 + (CA)n Simple_repeat Simple_repeat 2 40 0 1435 236 29 29 chr6 150248311 150248696 -39030858 + MLT1B LTR MaLR 3 387 -3 400 230 53 40 chr6 150248964 150249116 -39030438 - Charlie8 DNA MER1_type -2157 260 107 351 44 0 0 chr6 150249140 150249185 -39030369 + (CA)n Simple_repeat Simple_repeat 2 46 0 211 190 177 13 chr6 150249366 150249445 -39030109 + L2 LINE L2 2453 2544 -770 423 256 8 31 chr6 150249450 150249579 -39029975 + L1ME LINE L1 464 589 -6236 302 282 0 0 chr6 150249577 150249662 -39029892 + L1ME LINE L1 820 904 -5921 * 780 165 51 0 chr6 150249676 150249852 -39029702 + L1ME LINE L1 1116 1300 -5242 * 3231 208 84 64 chr6 150249850 150251064 -39028490 + L1ME LINE L1 4060 5297 -1347 2121 110 0 3 chr6 150251073 150251397 -39028157 + AluSx SINE Alu 1 323 0 819 143 0 71 chr6 150251425 150251540 -39028014 + AluSg/x SINE Alu 167 270 -40 198 0 0 0 chr6 150251540 150251562 -39027992 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 819 143 0 71 chr6 150251562 150251600 -39027954 + AluSg/x SINE Alu 270 309 -1 1650 204 45 37 chr6 150251601 150252461 -39027093 + L1ME LINE L1 5310 6164 -500 274 79 0 0 chr6 150252461 150252499 -39027055 - L1M1 LINE L1 -7372 193 156 304 197 0 30 chr6 150252516 150252582 -39026972 + L1ME LINE L1 6163 6226 -438 * 469 205 18 18 chr6 150252571 150252683 -39026871 + L1ME LINE L1 5673 5784 -380 359 225 33 58 chr6 150252685 150252865 -39026689 + L1MA10 LINE L1 5941 6262 -63 2273 80 0 7 chr6 150252870 150253185 -39026369 - AluSx SINE Alu 0 313 1 1039 293 153 25 chr6 150253237 150253919 -39025635 + L2 LINE L2 2535 3311 -2 284 333 26 43 chr6 150253925 150254042 -39025512 + L2 LINE L2 3133 3247 -25 208 143 0 0 chr6 150255358 150255393 -39024161 + (A)n Simple_repeat Simple_repeat 1 35 0 2399 104 0 0 chr6 150257073 150257381 -39022173 + AluSx SINE Alu 1 308 -4 194 292 78 52 chr6 150308077 150308231 -38971323 + L2 LINE L2 2337 2494 -820 1206 139 43 13 chr6 150308301 150308531 -38971023 - L1PA14 LINE L1 -2 6159 5923 33 25 0 0 chr6 150308550 150308590 -38970964 + AT_rich Low_complexity Low_complexity 1 40 0 2678 109 21 12 chr6 150309025 150309448 -38970106 + MER4C LTR ERV1 39 465 0 461 290 304 25 chr6 150309452 150309811 -38969743 + L2 LINE L2 2852 3310 -3 2442 182 45 13 chr6 150309958 150310900 -38968654 + L1MB7 LINE L1 4855 5824 -360 471 127 0 14 chr6 150310900 150310971 -38968583 + Tigger2 DNA MER2_type 1 70 -2648 * 2421 143 52 5 chr6 150310953 150311374 -38968180 + Tigger2 DNA MER2_type 2267 2707 -11 1380 198 27 87 chr6 150311374 150311743 -38967811 + L1MB7 LINE L1 5830 6176 -8 21 0 0 0 chr6 150312422 150312443 -38967111 + AT_rich Low_complexity Low_complexity 1 21 0 434 253 6 80 chr6 150312767 150312929 -38966625 + MIR SINE MIR 67 216 -46 2381 77 0 10 chr6 150313980 150314292 -38965262 + AluSc SINE Alu 1 309 0 768 250 42 47 chr6 150314770 150315006 -38964548 + MIR SINE MIR 28 262 0 22 0 0 0 chr6 150315668 150315690 -38963864 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr6 150316038 150316083 -38963471 + AT_rich Low_complexity Low_complexity 1 45 0 2376 50 0 72 chr6 150316134 150316452 -38963102 + AluY SINE Alu 2 296 -15 24 32 0 0 chr6 150316848 150316879 -38962675 + AT_rich Low_complexity Low_complexity 1 31 0 193 323 16 0 chr6 150317128 150317190 -38962364 - L2 LINE L2 -56 3216 3154 470 285 64 68 chr6 150318372 150318492 -38961062 - MIR SINE MIR 0 262 143 1608 148 13 52 chr6 150318492 150318802 -38960752 + AluJo SINE Alu 13 310 -2 470 285 64 68 chr6 150318802 150318930 -38960624 - MIR SINE MIR -119 143 15 857 193 0 0 chr6 150319263 150319413 -38960141 - AluSg/x SINE Alu -30 282 133 1153 199 4 5 chr6 150320507 150320804 -38958750 - MER2 DNA MER2_type 0 345 2 203 59 0 29 chr6 150320943 150320977 -38958577 + (ATG)n Simple_repeat Simple_repeat 3 35 0 236 226 0 19 chr6 150321204 150321257 -38958297 + Charlie4 DNA MER1_type 1 52 -1909 1248 163 78 39 chr6 150321451 150321709 -38957845 + AluJb SINE Alu 2 269 -43 401 221 35 0 chr6 150321797 150321883 -38957671 + L1ME1 LINE L1 38 126 -6270 310 217 14 0 chr6 150321921 150321990 -38957564 - MER96 DNA MER1_type? -1 174 105 3717 215 69 32 chr6 150322011 150323219 -38956335 + L1ME1 LINE L1 4304 5608 -627 5824 31 1 0 chr6 150323219 150323906 -38955648 - L1PA3 LINE L1 -3 6152 5465 3717 215 69 32 chr6 150323906 150324554 -38955000 + L1ME1 LINE L1 5608 6230 -5 328 229 116 68 chr6 150324638 150324796 -38954758 + L1ME LINE L1 5297 5468 -653 235 274 114 35 chr6 150324844 150325045 -38954509 + L1ME LINE L1 5696 5912 -209 196 315 19 0 chr6 150326555 150326609 -38952945 - L2 LINE L2 -18 3254 3200 24 32 0 0 chr6 150327341 150327372 -38952182 + AT_rich Low_complexity Low_complexity 1 31 0 5975 121 51 6 chr6 150327833 150328786 -38950768 - Tigger1 DNA MER2_type 0 2418 1423 * 6549 134 26 2 chr6 150328784 150329807 -38949747 - Tigger1 DNA MER2_type -1370 1048 1 239 286 77 53 chr6 150329837 150330019 -38949535 - MIR SINE MIR -63 145 9 21 0 0 0 chr6 150330293 150330314 -38949240 + AT_rich Low_complexity Low_complexity 1 21 0 1599 153 56 21 chr6 150330637 150330924 -38948630 + AluJb SINE Alu 1 297 -15 444 37 0 0 chr6 150331022 150331076 -38948478 + (TATG)n Simple_repeat Simple_repeat 3 56 0 865 135 0 0 chr6 150331076 150331192 -38948362 - FLAM_C SINE Alu -183 119 1 715 272 61 4 chr6 150331374 150331620 -38947934 + MIR SINE MIR 1 260 -2 21 0 0 0 chr6 150331665 150331686 -38947868 + AT_rich Low_complexity Low_complexity 1 21 0 204 234 0 64 chr6 150332081 150332128 -38947426 + L2 LINE L2 3257 3300 -13 265 306 31 45 chr6 150332566 150332759 -38946795 + MIR SINE MIR 7 262 0 301 302 64 50 chr6 150333970 150334151 -38945403 - MIR SINE MIR -67 141 16 260 384 30 83 chr6 150337250 150337516 -38942038 - L2 LINE L2 -5 3267 3016 659 251 108 26 chr6 150338012 150338207 -38941347 - MER20 DNA MER1_type -7 212 2 23 0 0 0 chr6 150338211 150338234 -38941320 + AT_rich Low_complexity Low_complexity 1 23 0 557 312 170 54 chr6 150340146 150340569 -38938985 - L3 LINE CR1 -2 1575 1104 2232 99 0 0 chr6 150340762 150341054 -38938500 - AluY SINE Alu -19 292 1 24 85 0 0 chr6 150342464 150342523 -38937031 + AT_rich Low_complexity Low_complexity 1 59 0 455 339 144 38 chr6 150344162 150345007 -38934547 - L2 LINE L2 -687 2627 1679 2142 121 3 0 chr6 150345007 150345304 -38934250 - AluSx SINE Alu -14 298 1 455 339 144 38 chr6 150345304 150345361 -38934193 - L2 LINE L2 -1635 1679 1629 184 250 150 12 chr6 150346078 150346158 -38933396 + MIR SINE MIR 120 210 -52 27 29 0 0 chr6 150346951 150346985 -38932569 + AT_rich Low_complexity Low_complexity 1 34 0 4002 179 28 4 chr6 150347556 150348272 -38931282 + MER44D DNA MER2_type 1 605 0 5414 220 63 28 chr6 150348281 150348783 -38930771 + L1M4 LINE L1 16 499 -6146 219 69 0 0 chr6 150348783 150348812 -38930742 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5414 220 63 28 chr6 150348812 150349941 -38929613 + L1M4 LINE L1 499 2131 -4514 24 0 0 0 chr6 150350202 150350226 -38929328 + AT_rich Low_complexity Low_complexity 1 24 0 205 230 90 60 chr6 150351832 150351932 -38927622 - MIR SINE MIR -10 252 150 186 366 42 0 chr6 150352402 150352473 -38927081 + L2 LINE L2 3185 3258 -14 926 244 61 4 chr6 150353124 150353353 -38926201 - Charlie1b DNA MER1_type -281 242 1 1067 146 16 106 chr6 150353957 150354177 -38925377 - AluJo SINE Alu -2 310 113 2437 70 0 0 chr6 150354177 150354479 -38925075 + AluY SINE Alu 1 302 -9 1067 146 16 106 chr6 150354479 150354504 -38925050 - AluJo SINE Alu -199 113 87 982 221 104 4 chr6 150354578 150354827 -38924727 + MLT1B LTR MaLR 18 291 -99 1559 229 37 11 chr6 150354828 150355182 -38924372 + MLT1A2 LTR MaLR 1 363 -11 189 267 0 50 chr6 150355212 150355272 -38924282 + L2 LINE L2 3257 3313 0 953 176 68 59 chr6 150356209 150356431 -38923123 + MER58A DNA MER1_type 1 224 0 24 53 0 0 chr6 150357282 150357320 -38922234 + AT_rich Low_complexity Low_complexity 1 38 0 1888 149 3 10 chr6 150357451 150357752 -38921802 - AluSx SINE Alu -13 299 1 666 227 108 17 chr6 150358125 150358301 -38921253 + MER3 DNA MER1_type 2 193 -16 337 326 169 0 chr6 150358310 150358482 -38921072 - L2 LINE L2 -854 2460 2260 275 352 126 20 chr6 150358493 150358834 -38920720 - L2 LINE L2 -1156 2158 1782 1856 160 3 0 chr6 150359408 150359695 -38919859 - AluSx SINE Alu -21 291 4 239 304 14 0 chr6 150359751 150359820 -38919734 - L2 LINE L2 0 3272 3203 228 256 176 16 chr6 150359832 150359957 -38919597 - L2 LINE L2 -1312 2002 1858 768 317 31 63 chr6 150360852 150361271 -38918283 + L2 LINE L2 2597 3002 -311 27 29 0 0 chr6 150361323 150361357 -38918197 + AT_rich Low_complexity Low_complexity 1 34 0 284 287 172 8 chr6 150361367 150361489 -38918065 + L2 LINE L2 3172 3313 0 * 331 238 38 38 chr6 150361487 150361592 -38917962 + L2 LINE L2 3207 3311 -2 449 307 89 49 chr6 150362515 150363007 -38916547 - L1ME4a LINE L1 -12 6109 5598 198 260 0 0 chr6 150363614 150363664 -38915890 + L2 LINE L2 3015 3064 -208 1825 163 0 13 chr6 150364662 150364963 -38914591 + AluJb SINE Alu 2 298 -14 1981 107 36 0 chr6 150365413 150365694 -38913860 + AluSx SINE Alu 1 291 -21 21 57 0 0 chr6 150366510 150366545 -38913009 + AT_rich Low_complexity Low_complexity 1 35 0 1558 248 108 10 chr6 150367357 150368078 -38911476 + L1ME3A LINE L1 2538 3329 -2817 2027 246 81 69 chr6 150368197 150368316 -38911238 + L1ME3A LINE L1 4146 4262 -1908 1715 186 31 0 chr6 150368316 150368606 -38910948 + AluJb SINE Alu 5 303 -9 2027 246 81 69 chr6 150368606 150370423 -38909131 + L1ME3A LINE L1 4262 6098 -72 238 198 0 73 chr6 150370696 150370792 -38908762 + A-rich Low_complexity Low_complexity 5 93 0 2208 115 0 0 chr6 150371021 150371317 -38908237 + AluSx SINE Alu 1 296 -16 1292 167 32 0 chr6 150372144 150372360 -38907194 - AluJb SINE Alu -2 310 88 21 0 0 0 chr6 150372544 150372565 -38906989 + AT_rich Low_complexity Low_complexity 1 21 0 1687 225 57 73 chr6 150372824 150373404 -38906150 + MLT1F1 LTR MaLR 1 567 0 448 275 101 7 chr6 150373950 150374088 -38905466 + MIR SINE MIR 112 262 0 30 59 0 0 chr6 150375339 150375390 -38904164 + AT_rich Low_complexity Low_complexity 1 51 0 22 56 0 0 chr6 150376664 150376700 -38902854 + AT_rich Low_complexity Low_complexity 1 36 0 4831 124 95 13 chr6 150376738 150376824 -38902730 + L1PA10 LINE L1 3106 3184 -2962 1459 133 0 0 chr6 150376824 150377027 -38902527 + AluSx SINE Alu 1 203 -109 4831 124 95 13 chr6 150377027 150377802 -38901752 + L1PA10 LINE L1 3184 4038 -2108 5753 85 66 1 chr6 150377793 150379339 -38900215 + L1PA10 LINE L1 4555 6167 -1 2906 13 0 0 chr6 150380133 150380451 -38899103 + AluYb8 SINE Alu 1 318 0 2520 217 89 54 chr6 150380451 150382252 -38897302 - L1ME1 LINE L1 -12 6223 4352 1821 151 48 48 chr6 150382254 150382606 -38896948 + MER47A DNA MER2_type 1 352 -14 5310 247 69 36 chr6 150382619 150382909 -38896645 - L1ME1 LINE L1 -1877 4338 4059 605 117 68 0 chr6 150382909 150383012 -38896542 - HY1 scRNA scRNA -2 110 1 5310 247 69 36 chr6 150383012 150383723 -38895831 - L1ME1 LINE L1 -2156 4059 3373 1930 221 88 52 chr6 150383723 150384306 -38895248 + MER77 LTR ERV1 2 605 0 5310 247 69 36 chr6 150384306 150385440 -38894114 - L1ME1 LINE L1 -2842 3373 2278 2523 66 0 0 chr6 150385440 150385742 -38893812 - AluY SINE Alu -9 302 1 5310 247 69 36 chr6 150385742 150385881 -38893673 - L1ME1 LINE L1 -3937 2278 2145 1953 125 146 34 chr6 150385881 150386224 -38893330 + MSTA LTR MaLR 1 393 -35 1936 118 0 14 chr6 150386224 150386503 -38893051 - AluSx SINE Alu -37 275 1 1953 125 146 34 chr6 150386503 150386542 -38893012 + MSTA LTR MaLR 393 426 -2 9181 139 15 42 chr6 150386545 150388166 -38891388 + MSTA-int LTR MaLR 3 1580 0 1503 169 180 11 chr6 150388166 150388532 -38891022 + MSTA LTR MaLR 1 428 0 5310 247 69 36 chr6 150388532 150388580 -38890974 - L1ME1 LINE L1 -4071 2144 2099 1814 172 10 3 chr6 150388580 150388883 -38890671 + AluJb SINE Alu 1 305 -7 5310 247 69 36 chr6 150388883 150388929 -38890625 - L1ME1 LINE L1 -4116 2099 1935 2239 163 42 51 chr6 150388938 150389115 -38890439 + MSTC LTR MaLR 4 181 -247 2011 159 9 18 chr6 150389115 150389455 -38890099 + MER1B DNA MER1_type 1 337 0 2239 163 42 51 chr6 150389455 150389706 -38889848 + MSTC LTR MaLR 181 428 0 1084 165 94 0 chr6 150389735 150389947 -38889607 - MER46A DNA MER2_type -1 235 4 698 295 113 59 chr6 150389950 150390629 -38888925 - L1ME1 LINE L1 -4488 1908 1193 334 238 74 49 chr6 150390667 150390789 -38888765 + MER63 DNA MER1_type 2 752 -310 * 335 261 65 0 chr6 150390780 150390872 -38888682 + MER63 DNA MER1_type 965 1062 0 509 239 188 44 chr6 150390872 150391297 -38888257 - L1ME1 LINE L1 -5218 1178 683 2132 116 0 26 chr6 150391297 150391600 -38887954 - AluSg SINE Alu -15 295 1 509 239 188 44 chr6 150391600 150391626 -38887928 - L1ME1 LINE L1 -5713 683 662 397 171 26 0 chr6 150392030 150392106 -38887448 - MLT1G LTR MaLR 0 590 513 2442 112 14 19 chr6 150392334 150392700 -38886854 - THE1B LTR MaLR 0 364 1 188 245 66 66 chr6 150392974 150393080 -38886474 + MIR SINE MIR 157 262 0 273 87 65 0 chr6 150393189 150393235 -38886319 - L2 LINE L2 0 3313 3265 21 0 0 0 chr6 150393445 150393466 -38886088 + AT_rich Low_complexity Low_complexity 1 21 0 2083 141 0 3 chr6 150393472 150393777 -38885777 - AluSq SINE Alu -9 304 1 373 197 0 15 chr6 150394265 150394331 -38885223 + AluS SINE Alu 13 77 -225 504 245 161 0 chr6 150394333 150394476 -38885078 + MIR SINE MIR 60 225 -37 23 0 0 0 chr6 150395154 150395177 -38884377 + AT_rich Low_complexity Low_complexity 1 23 0 1766 184 7 0 chr6 150395183 150395466 -38884088 - AluJb SINE Alu -25 287 3 1511 144 58 0 chr6 150395943 150396221 -38883333 - L1MA4 LINE L1 -5 6295 6002 262 274 75 9 chr6 150396379 150396485 -38883069 - HAL1b LINE L1 -819 529 417 342 330 51 60 chr6 150396853 150397068 -38882486 + MIR SINE MIR 20 232 -30 589 261 130 9 chr6 150397238 150397453 -38882101 + MIR SINE MIR 1 241 -21 281 302 141 41 chr6 150398609 150398851 -38880703 - L3 LINE CR1 -244 1333 1068 271 292 17 33 chr6 150399284 150399404 -38880150 + L2 LINE L2 1986 2103 -1211 340 267 0 0 chr6 150399426 150399501 -38880053 + MIR SINE MIR 67 141 -121 260 340 139 19 chr6 150399593 150399802 -38879752 + L2 LINE L2 2695 2928 -386 25 31 0 0 chr6 150399973 150400005 -38879549 + AT_rich Low_complexity Low_complexity 1 32 0 182 365 47 0 chr6 150400016 150400101 -38879453 + L2 LINE L2 3184 3272 0 672 195 146 54 chr6 150400125 150400330 -38879224 + MER58A DNA MER1_type 1 224 0 22 35 0 0 chr6 150400587 150400616 -38878938 + AT_rich Low_complexity Low_complexity 1 29 0 2174 91 35 0 chr6 150401416 150401701 -38877853 - AluSx SINE Alu -17 295 1 22 0 0 0 chr6 150402068 150402090 -38877464 + AT_rich Low_complexity Low_complexity 1 22 0 1672 158 0 0 chr6 150402164 150402417 -38877137 + AluSq SINE Alu 2 254 -59 342 204 212 9 chr6 150402617 150402730 -38876824 + MIR SINE MIR 123 258 -4 380 305 45 13 chr6 150402874 150403028 -38876526 + MIR SINE MIR 104 262 0 389 354 78 52 chr6 150403601 150404096 -38875458 + L2 LINE L2 2674 3193 -79 237 139 0 0 chr6 150404118 150404161 -38875393 + (GAGAA)n Simple_repeat Simple_repeat 4 46 0 346 240 118 56 chr6 150404165 150404350 -38875204 + MIR SINE MIR 16 222 -40 30 59 0 0 chr6 150404370 150404421 -38875133 + AT_rich Low_complexity Low_complexity 1 51 0 2090 132 0 3 chr6 150404524 150404820 -38874734 - AluSx SINE Alu -17 295 1 353 344 58 72 chr6 150406012 150406373 -38873181 + L1M2 LINE L1 560 915 -5934 250 291 162 42 chr6 150407184 150407425 -38872129 + L2 LINE L2 2576 2845 -469 220 356 26 26 chr6 150407512 150407627 -38871927 + L2 LINE L2 2903 3017 -255 343 287 11 0 chr6 150407726 150407813 -38871741 + L2 LINE L2 3224 3311 -2 216 268 85 0 chr6 150407808 150407890 -38871664 - MIR SINE MIR 0 262 174 * 324 270 110 0 chr6 150408054 150408154 -38871400 - L2 LINE L2 -213 3059 2949 648 372 19 0 chr6 150408328 150408640 -38870914 - L2 LINE L2 -557 2757 2440 5822 194 80 35 chr6 150408677 150410202 -38869352 + L1MC4 LINE L1 6459 8036 -6 331 315 0 0 chr6 150410534 150410623 -38868931 - L1MC4 LINE L1 -1339 6703 6615 333 239 0 0 chr6 150410626 150410714 -38868840 + L1MC4 LINE L1 6614 6701 -1341 2125 139 68 8 chr6 150410919 150411287 -38868267 - MLT1B LTR MaLR 0 390 1 433 261 132 46 chr6 150411321 150411669 -38867885 + L1MC5 LINE L1 7540 7917 -44 1183 196 125 35 chr6 150411910 150412114 -38867440 + MER44D DNA MER2_type 1 185 -2306 2460 160 29 7 chr6 150412114 150412563 -38866991 + MER65C LTR ERV1 1 459 -2 1183 196 125 35 chr6 150412563 150412669 -38866885 + MER44D DNA MER2_type 185 609 0 1484 245 66 30 chr6 150413208 150413585 -38865969 + L2 LINE L2 2066 2463 -851 2173 168 25 0 chr6 150413585 150413978 -38865576 + MER57A LTR ERV1 1 403 0 1484 245 66 30 chr6 150413978 150414041 -38865513 + L2 LINE L2 2463 2522 -792 367 286 123 25 chr6 150414154 150414357 -38865197 - L1MEd LINE L1 -5763 356 134 348 289 153 61 chr6 150415584 150415616 -38863938 - HAL1 LINE L1 -8 2499 2471 2199 103 3 3 chr6 150415616 150415936 -38863618 + AluSx SINE Alu 1 312 0 348 289 153 61 chr6 150415936 150416197 -38863357 - HAL1 LINE L1 -36 2471 2179 740 208 130 16 chr6 150416211 150416403 -38863151 + MIR SINE MIR 8 221 -41 259 207 87 33 chr6 150416567 150416717 -38862837 - HAL1 LINE L1 -1325 1182 1025 307 291 63 58 chr6 150416744 150416967 -38862587 - LTR41 LTR ERVL -3 770 547 2638 205 52 20 chr6 150417062 150417805 -38861749 - L1 LINE L1 -2344 3802 3036 302 0 0 26 chr6 150417814 150417853 -38861701 + (TTA)n Simple_repeat Simple_repeat 3 40 0 12246 21 1 1 chr6 150417853 150420040 -38859514 - L1PA3 LINE L1 -18 6137 3954 1063 164 0 11 chr6 150421102 150421279 -38858275 - FRAM SINE Alu -9 167 1 243 240 40 60 chr6 150422604 150422704 -38856850 + MIR SINE MIR 54 151 -57 218 235 0 20 chr6 150422721 150422772 -38856782 - MIR3 SINE MIR -47 161 112 1601 156 13 66 chr6 150423167 150423468 -38856086 - AluJo SINE Alu -27 285 1 2190 101 0 3 chr6 150423606 150423892 -38855662 + AluSg SINE Alu 2 286 -24 196 321 149 15 chr6 150424505 150424639 -38854915 + L2 LINE L2 2231 2382 -932 427 350 131 14 chr6 150424696 150425047 -38854507 + L2 LINE L2 2584 2975 -339 425 277 15 51 chr6 150425168 150425305 -38854249 + L2 LINE L2 3182 3313 0 37 52 0 0 chr6 150426837 150426895 -38852659 + AT_rich Low_complexity Low_complexity 1 58 0 1023 167 56 42 chr6 150426896 150427112 -38852442 + MER20 DNA MER1_type 1 219 0 1927 164 0 0 chr6 150427358 150427651 -38851903 - AluJb SINE Alu -19 293 1 2399 64 7 3 chr6 150428599 150428894 -38850660 - AluSp SINE Alu -14 299 4 28 29 0 0 chr6 150429046 150429081 -38850473 + AT_rich Low_complexity Low_complexity 1 35 0 2028 148 0 0 chr6 150430135 150430438 -38849116 + AluSx SINE Alu 1 303 -9 2056 132 10 3 chr6 150431346 150431649 -38847905 + AluSx SINE Alu 1 305 -7 204 67 0 0 chr6 150431649 150431679 -38847875 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 365 294 129 72 chr6 150431782 150431976 -38847578 + MIR3 SINE MIR 1 205 -3 1371 212 60 14 chr6 150433239 150433588 -38845966 + MLT1A1 LTR MaLR 1 365 0 556 218 65 59 chr6 150434008 150434178 -38845376 + MER5B DNA MER1_type 1 171 -7 227 356 109 45 chr6 150434198 150435012 -38844542 + L2 LINE L2 619 1484 -1830 922 201 37 11 chr6 150435049 150435238 -38844316 - MER20 DNA MER1_type -21 198 5 275 323 107 73 chr6 150435642 150436468 -38843086 + L2 LINE L2 1992 2845 -469 317 330 37 90 chr6 150436510 150436864 -38842690 + L2 LINE L2 2936 3270 -2 330 251 80 49 chr6 150437345 150437508 -38842046 + MIR SINE MIR 9 176 -86 375 380 43 32 chr6 150438010 150438289 -38841265 - L2 LINE L2 -5 3267 2986 1886 126 39 3 chr6 150438318 150438603 -38840951 + AluSx SINE Alu 1 295 -17 742 205 0 0 chr6 150439579 150439706 -38839848 - FLAM_C SINE Alu -16 127 1 1167 171 0 0 chr6 150440225 150440406 -38839148 + AluJb SINE Alu 130 310 -2 24 0 0 0 chr6 150440822 150440846 -38838708 + AT_rich Low_complexity Low_complexity 1 24 0 2218 94 7 3 chr6 150440919 150441218 -38838336 - AluSq SINE Alu -13 300 1 289 245 233 38 chr6 150441235 150441394 -38838160 - MIR3 SINE MIR 0 208 19 1694 172 3 29 chr6 150443153 150443467 -38836087 + AluJo SINE Alu 1 306 -6 291 104 0 0 chr6 150443646 150443694 -38835860 + (TA)n Simple_repeat Simple_repeat 1 48 0 2374 80 0 0 chr6 150444143 150444442 -38835112 - AluSx SINE Alu -13 299 1 577 329 21 29 chr6 150444567 150444810 -38834744 - MIR SINE MIR -5 257 15 807 237 101 64 chr6 150445257 150445559 -38833995 + MLT1B LTR MaLR 1 321 -69 2044 135 21 54 chr6 150445559 150445681 -38833873 - L1PB3 LINE L1 -5 6149 6024 2224 99 3 0 chr6 150445681 150445975 -38833579 - AluSx SINE Alu -17 295 1 2044 135 21 54 chr6 150445975 150446238 -38833316 - L1PB3 LINE L1 -130 6024 5777 807 237 101 64 chr6 150446238 150446311 -38833243 + MLT1B LTR MaLR 321 390 0 2441 186 94 27 chr6 150446615 150447380 -38832174 + MER21A LTR ERV1 1 931 0 14905 122 19 16 chr6 150447381 150449749 -38829805 + Tigger1 DNA MER2_type 43 2418 0 27 29 0 0 chr6 150450050 150450084 -38829470 + AT_rich Low_complexity Low_complexity 1 34 0 566 160 19 28 chr6 150450974 150451080 -38828474 + MLT1C LTR MaLR 361 465 -2 591 279 101 34 chr6 150451085 150451186 -38828368 - L1MEc LINE L1 -5607 789 696 2329 88 3 0 chr6 150451186 150451482 -38828072 - AluSg SINE Alu -13 297 1 591 279 101 34 chr6 150451482 150451599 -38827955 - L1MEc LINE L1 -5700 696 588 2158 158 81 50 chr6 150451599 150452094 -38827460 + LTR54 LTR ERV1 1 510 0 591 279 101 34 chr6 150452094 150452232 -38827322 - L1MEc LINE L1 -5808 588 408 21 57 0 0 chr6 150452279 150452314 -38827240 + AT_rich Low_complexity Low_complexity 1 35 0 284 293 0 0 chr6 150452894 150452969 -38826585 + MIR3 SINE MIR 120 194 -14 2081 152 64 0 chr6 150453306 150453649 -38825905 + MLT1A1 LTR MaLR 1 365 0 963 194 24 0 chr6 150453922 150454092 -38825462 + MER5A DNA MER1_type 5 178 -11 25 0 0 0 chr6 150454726 150454751 -38824803 + AT_rich Low_complexity Low_complexity 1 25 0 2169 87 42 3 chr6 150454963 150455252 -38824302 + AluSx SINE Alu 6 305 -7 938 169 44 0 chr6 150455269 150455429 -38824125 + MER7C DNA MER2_type 1 167 -435 2002 131 0 3 chr6 150455430 150455712 -38823842 + AluJb SINE Alu 1 281 -31 186 172 0 0 chr6 150455946 150455975 -38823579 - L2 LINE L2 -18 3254 3226 222 255 20 0 chr6 150455991 150456042 -38823512 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 249 228 0 18 chr6 150456439 150456496 -38823058 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 2035 139 0 19 chr6 150456592 150456902 -38822652 + AluJb SINE Alu 1 304 -8 2412 80 3 10 chr6 150457131 150457445 -38822109 + AluSq SINE Alu 1 312 -1 1324 232 11 46 chr6 150457672 150458038 -38821516 + L1MB7 LINE L1 46 398 -6144 1168 122 0 28 chr6 150458038 150458218 -38821336 - AluSg/x SINE Alu -9 303 129 354 266 62 9 chr6 150458222 150458335 -38821219 + L1MB7 LINE L1 406 524 -6018 5380 234 100 57 chr6 150458337 150459205 -38820349 + L1MB7 LINE L1 1004 1833 -4811 2148 112 3 13 chr6 150459205 150459518 -38820036 + AluSg SINE Alu 1 310 0 5380 234 100 57 chr6 150459518 150459753 -38819801 + L1MB7 LINE L1 1833 2056 -4588 447 68 0 0 chr6 150459753 150459812 -38819742 + (TA)n Simple_repeat Simple_repeat 2 60 0 5380 234 100 57 chr6 150459812 150463109 -38816445 + L1MB7 LINE L1 2056 5739 -905 1142 172 56 2 chr6 150463109 150463394 -38816160 + MER2 DNA MER2_type 1 345 0 331 200 40 0 chr6 150463394 150463469 -38816085 + L1MB7 LINE L1 5738 5815 -829 50 42 0 0 chr6 150463474 150463545 -38816009 + AT_rich Low_complexity Low_complexity 1 71 0 219 209 0 0 chr6 150463571 150463614 -38815940 + MIR SINE MIR 220 262 0 452 189 0 54 chr6 150463741 150463889 -38815665 + CT-rich Low_complexity Low_complexity 2 141 0 493 80 80 11 chr6 150463891 150463979 -38815575 - MER41A LTR ERV1 -62 492 399 270 0 0 0 chr6 150464042 150464072 -38815482 + (CA)n Simple_repeat Simple_repeat 1 30 0 4048 165 64 11 chr6 150464128 150464951 -38814603 + L1MB7 LINE L1 5808 6674 -8 2343 85 0 19 chr6 150465298 150465615 -38813939 - AluY SINE Alu 0 311 1 337 227 156 50 chr6 150466639 150466780 -38812774 + MIR SINE MIR 107 262 0 469 316 29 29 chr6 150467730 150467939 -38811615 + L3 LINE CR1 636 844 -733 192 307 150 24 chr6 150467957 150468084 -38811470 - MIR SINE MIR -20 242 100 1202 153 42 32 chr6 150468179 150468395 -38811159 - AluJo SINE Alu -91 221 4 181 329 12 24 chr6 150468891 150468973 -38810581 - MIR3 SINE MIR -12 196 116 399 328 148 22 chr6 150469618 150470092 -38809462 - L2 LINE L2 -71 3242 2678 362 231 0 0 chr6 150470110 150470175 -38809379 - MER94 DNA DNA 0 134 70 249 128 0 0 chr6 150470235 150470282 -38809272 + (A)n Simple_repeat Simple_repeat 1 47 0 685 211 117 12 chr6 150470508 150470679 -38808875 - MIR SINE MIR -62 200 12 196 326 93 0 chr6 150470707 150470793 -38808761 - L2 LINE L2 -361 2911 2818 254 95 24 0 chr6 150471817 150471828 -38807726 + (CA)n Simple_repeat Simple_repeat 1 54 0 254 95 24 0 chr6 150471828 150471870 -38807684 + (CA)n Simple_repeat Simple_repeat 2 44 0 291 314 69 36 chr6 150474045 150474322 -38805232 + HAL1b LINE L1 379 664 -684 2150 104 0 0 chr6 150474734 150475043 -38804511 + AluSg SINE Alu 1 309 0 25 70 0 35 chr6 150475728 150475814 -38803740 + AT_rich Low_complexity Low_complexity 1 83 0 2220 101 3 3 chr6 150476056 150476352 -38803202 - AluSc SINE Alu -13 296 1 1308 179 26 0 chr6 150476374 150476603 -38802951 + MER46A DNA MER2_type 1 235 -1 2134 164 37 12 chr6 150479338 150479740 -38799814 + MLT2D LTR ERVL 1 412 -2 878 253 88 19 chr6 150480015 150480434 -38799120 - L1MCc LINE L1 -4084 3038 2591 254 273 159 7 chr6 150480501 150480761 -38798793 - L1MCc LINE L1 -4550 2391 1932 441 0 0 0 chr6 150480761 150480810 -38798744 + (CA)n Simple_repeat Simple_repeat 1 49 0 10359 172 58 41 chr6 150480962 150481458 -38798096 - L1PB1 LINE L1 -1 6866 6380 547 86 0 12 chr6 150481458 150481539 -38798015 - MADE1 DNA Mariner 0 80 1 10359 172 58 41 chr6 150481539 150482134 -38797420 - L1PB1 LINE L1 -487 6380 5796 6677 54 6 75 chr6 150482134 150483184 -38796370 - SVA Other Other 0 1386 433 10359 172 58 41 chr6 150483184 150483201 -38796353 - L1PB1 LINE L1 -1071 5796 5781 5928 79 26 16 chr6 150483201 150484059 -38795495 - SVA Other Other -520 866 1 10359 172 58 41 chr6 150484059 150486216 -38793338 - L1PB1 LINE L1 -1086 5781 3542 14566 101 108 12 chr6 150486219 150488553 -38791001 - L1PB1 LINE L1 -4301 2562 3 362 295 62 71 chr6 150488610 150489383 -38790171 - L1MCc LINE L1 -4896 1943 1142 356 316 47 24 chr6 150490442 150490695 -38788859 - HAL1 LINE L1 -962 1545 1287 1259 171 49 77 chr6 150491506 150491793 -38787761 + AluJo SINE Alu 2 280 -32 228 246 18 109 chr6 150491834 150491944 -38787610 - MIR SINE MIR -114 148 49 213 298 48 67 chr6 150491998 150492102 -38787452 + L2 LINE L2 3171 3272 0 1849 177 42 3 chr6 150492263 150492597 -38786957 + MER7A DNA MER2_type 1 345 -1 312 27 0 0 chr6 150493188 150493225 -38786329 + (TA)n Simple_repeat Simple_repeat 2 38 0 2514 60 3 0 chr6 150493225 150493527 -38786027 - AluY SINE Alu -8 303 1 415 302 86 51 chr6 150493588 150493892 -38785662 + L1M4 LINE L1 4177 4469 -1677 1867 161 70 3 chr6 150493892 150494234 -38785320 + MER47A DNA MER2_type 1 365 -1 415 302 86 51 chr6 150494234 150494578 -38784976 + L1M4 LINE L1 4469 4848 -1298 2080 246 68 90 chr6 150494841 150495717 -38783837 + L1MC4 LINE L1 6698 7543 -499 2531 77 0 0 chr6 150495717 150496027 -38783527 + AluSg SINE Alu 1 310 0 2080 246 68 90 chr6 150496027 150496328 -38783226 + L1MC4 LINE L1 7543 7849 -193 1563 170 33 11 chr6 150496578 150496890 -38782664 - AluJo SINE Alu 0 318 1 23 0 0 0 chr6 150497025 150497048 -38782506 + AT_rich Low_complexity Low_complexity 1 23 0 334 259 0 60 chr6 150497225 150497325 -38782229 + MIR SINE MIR 24 118 -90 213 312 87 14 chr6 150498038 150498176 -38781378 + L2 LINE L2 2138 2285 -1029 * 238 222 74 19 chr6 150498167 150498221 -38781333 + L2 LINE L2 3198 3254 -18 427 292 58 121 chr6 150498273 150498957 -38780597 + L2 LINE L2 2316 2954 -318 605 169 5 20 chr6 150498970 150499165 -38780389 + CT-rich Low_complexity Low_complexity 1 192 0 1766 168 53 0 chr6 150499313 150499634 -38779920 - MER2 DNA MER2_type -4 340 3 274 285 179 0 chr6 150500871 150501022 -38778532 + L2 LINE L2 3131 3308 -5 23 33 0 0 chr6 150501041 150501071 -38778483 + AT_rich Low_complexity Low_complexity 1 30 0 288 0 0 0 chr6 150502010 150502042 -38777512 + (A)n Simple_repeat Simple_repeat 1 32 0 294 29 0 0 chr6 150502042 150502077 -38777477 + (TA)n Simple_repeat Simple_repeat 1 35 0 25 0 0 0 chr6 150502077 150502102 -38777452 + AT_rich Low_complexity Low_complexity 1 25 0 1440 148 16 44 chr6 150502342 150502592 -38776962 - AluJb SINE Alu -9 303 61 259 219 0 0 chr6 150502665 150502706 -38776848 - AluJ/monomer SINE Alu -261 41 1 1946 140 0 0 chr6 150503925 150504204 -38775350 + AluSx SINE Alu 4 282 -30 306 127 0 0 chr6 150504222 150504277 -38775277 - Charlie5 DNA MER1_type -2499 113 59 1163 263 123 0 chr6 150504304 150504662 -38774892 - L2 LINE L2 -1037 2277 1876 194 0 39 0 chr6 150504917 150504943 -38774611 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 2544 62 0 0 chr6 150505421 150505725 -38773829 - AluY SINE Alu -7 304 1 2169 114 16 3 chr6 150505735 150506042 -38773512 - AluSq SINE Alu -2 311 1 1228 168 19 14 chr6 150506079 150506293 -38773261 - AluJb SINE Alu -92 220 6 191 257 71 88 chr6 150507009 150507122 -38772432 - MIR SINE MIR -148 114 4 2136 129 0 0 chr6 150507847 150508141 -38771413 + AluSq SINE Alu 3 296 -17 2401 73 7 3 chr6 150508144 150508445 -38771109 + AluY SINE Alu 1 302 -9 1224 112 93 28 chr6 150509034 150509249 -38770305 - MER30 DNA MER1_type 0 230 2 203 338 150 12 chr6 150509727 150509887 -38769667 + MIR3 SINE MIR 26 207 -1 1443 127 86 52 chr6 150510374 150510641 -38768913 - MER1B DNA MER1_type 0 339 64 1122 84 13 0 chr6 150510830 150510985 -38768569 - MER31A LTR ERV1 0 485 329 249 244 35 139 chr6 150510996 150511168 -38768386 - L2 LINE L2 -831 2483 2330 248 360 129 0 chr6 150511238 150511385 -38768169 + L2 LINE L2 3107 3272 0 274 328 130 23 chr6 150511832 150512009 -38767545 - MIR3 SINE MIR -5 203 8 182 346 128 32 chr6 150512887 150513043 -38766511 - MIR SINE MIR -51 211 41 299 303 0 0 chr6 150515902 150515991 -38763563 + (CATA)n Simple_repeat Simple_repeat 2 90 0 198 0 0 0 chr6 150517174 150517196 -38762358 + (T)n Simple_repeat Simple_repeat 1 22 0 1719 179 10 3 chr6 150518017 150518308 -38761246 + AluJb SINE Alu 1 293 -19 1522 168 7 3 chr6 150568826 150569118 -38710436 - L1P3 LINE L1 -5582 293 1 192 125 0 0 chr6 150570494 150570526 -38709028 + (T)n Simple_repeat Simple_repeat 1 32 0 632 251 85 76 chr6 150571023 150571589 -38707965 - HAL1 LINE L1 0 2507 1937 881 85 0 21 chr6 150571603 150571744 -38707810 + L1PA13 LINE L1 6026 6163 0 913 236 132 57 chr6 150571756 150572179 -38707375 + LTR16B LTR ERVL 1 455 -9 1320 267 106 25 chr6 150572587 150572634 -38706920 + HERVL LTR ERVL 544 586 -4410 2456 68 0 0 chr6 150572634 150572927 -38706627 - AluY SINE Alu -18 293 1 1320 267 106 25 chr6 150572927 150573229 -38706325 + HERVL LTR ERVL 586 953 -4043 2190 140 19 22 chr6 150573229 150573594 -38705960 + THE1B LTR MaLR 1 364 0 1320 267 106 25 chr6 150573594 150573774 -38705780 + HERVL LTR ERVL 953 1117 -3879 1434 342 29 16 chr6 150573806 150574677 -38704877 + HERVL LTR ERVL 3996 4846 -808 297 95 0 0 chr6 150574690 150574732 -38704822 - MLT2B1 LTR ERVL 0 515 474 414 0 0 0 chr6 150574732 150574778 -38704776 + (CA)n Simple_repeat Simple_repeat 2 47 0 327 254 23 34 chr6 150574842 150575019 -38704535 + (TATATG)n Simple_repeat Simple_repeat 3 177 0 * 442 214 29 17 chr6 150574912 150575085 -38704469 + (TA)n Simple_repeat Simple_repeat 1 175 0 312 211 8 39 chr6 150575129 150575257 -38704297 + (TA)n Simple_repeat Simple_repeat 2 125 0 22 35 0 0 chr6 150575259 150575288 -38704266 + AT_rich Low_complexity Low_complexity 1 29 0 227 216 63 81 chr6 150575290 150575401 -38704153 + HAL1 LINE L1 1939 2047 -460 1964 193 74 18 chr6 150575491 150575936 -38703618 - MLT2B1 LTR ERVL -50 470 1 1480 96 0 0 chr6 150576518 150576706 -38702848 - AluSq SINE Alu -125 188 1 267 350 60 8 chr6 150577341 150577458 -38702096 - L2 LINE L2 -1 3271 3149 2310 283 70 28 chr6 150579043 150580273 -38699281 + L1MEc LINE L1 38 1188 -4925 369 250 155 30 chr6 150580266 150580458 -38699096 + L1MEc LINE L1 1439 1674 -4722 * 249 33 0 0 chr6 150580458 150580488 -38699066 + (CA)n Simple_repeat Simple_repeat 2 31 0 369 250 155 30 chr6 150580488 150580559 -38698995 + L1MEc LINE L1 1674 1735 -4661 307 332 95 29 chr6 150580559 150580875 -38698679 - L1M4 LINE L1 -3698 2448 2112 238 291 12 23 chr6 150581227 150581313 -38698241 - L1MC/D LINE L1 -735 5609 5525 1906 224 67 18 chr6 150581347 150581946 -38697608 - L1MC/D LINE L1 -1102 5044 4417 273 284 128 0 chr6 150582021 150582123 -38697431 + HERVL LTR ERVL 2354 2468 -3186 1050 158 0 49 chr6 150582443 150582626 -38696928 - AluJo SINE Alu -21 291 118 32 0 0 0 chr6 150582626 150582658 -38696896 + AT_rich Low_complexity Low_complexity 1 32 0 783 169 0 8 chr6 150582658 150582788 -38696766 - AluJo SINE Alu -169 133 5 399 314 39 6 chr6 150582823 150582979 -38696575 + HERVL LTR ERVL 3001 3161 -2603 2522 210 60 7 chr6 150583343 150583924 -38695630 - MER90 LTR ERV1 -2 612 1 607 272 87 14 chr6 150584124 150584411 -38695143 + HERVL LTR ERVL 3415 3722 -2042 228 139 0 0 chr6 150585058 150585101 -38694453 + L1ME4a LINE L1 6075 6117 -4 838 242 105 25 chr6 150585637 150586020 -38693534 - MER57A LTR ERV1 0 403 1 669 260 105 5 chr6 150586535 150586735 -38692819 - MIR SINE MIR -30 232 13 2291 109 0 10 chr6 150586828 150587140 -38692414 + AluSg SINE Alu 1 309 -1 21 0 0 0 chr6 150587793 150587814 -38691740 + AT_rich Low_complexity Low_complexity 1 21 0 506 325 147 3 chr6 150588251 150588571 -38690983 - L2 LINE L2 0 3313 2948 511 31 0 0 chr6 150589910 150589974 -38689580 + L1PA3 LINE L1 6089 6152 -3 522 237 26 129 chr6 150590070 150590241 -38689313 - MER5A DNA MER1_type -3 185 25 2458 135 54 15 chr6 150590243 150590651 -38688903 - MSTA LTR MaLR -3 425 2 8175 147 27 82 chr6 150590654 150591845 -38687709 - MSTA-int LTR MaLR -6 1645 492 366 157 12 48 chr6 150591845 150591928 -38687626 + MADE1 DNA Mariner 1 80 0 8175 147 27 82 chr6 150591928 150592395 -38687159 - MSTA-int LTR MaLR -1159 492 1 2128 164 42 47 chr6 150592397 150592825 -38686729 - MSTA LTR MaLR -2 426 1 1441 182 80 28 chr6 150592825 150593149 -38686405 - MSTA LTR MaLR -87 341 1 192 280 0 0 chr6 150593259 150593309 -38686245 + MER5A DNA MER1_type 118 167 -22 1302 144 4 51 chr6 150593588 150593844 -38685710 - L1PB4 LINE L1 -4 6152 5909 5253 139 47 4 chr6 150593877 150594858 -38684696 - L1PA16 LINE L1 -8 6158 5155 21 71 0 0 chr6 150595266 150595308 -38684246 + AT_rich Low_complexity Low_complexity 1 42 0 1643 172 25 25 chr6 150595656 150595985 -38683569 + AluJo SINE Alu 1 329 0 440 284 100 13 chr6 150596229 150596468 -38683086 + L1ME4a LINE L1 4243 4502 -1644 14033 188 21 14 chr6 150596489 150598012 -38681542 - L1PB1 LINE L1 -8 6859 5348 1965 151 3 0 chr6 150598012 150598333 -38681221 + AluSq SINE Alu 1 313 0 14033 188 21 14 chr6 150598333 150602382 -38677172 - L1PB1 LINE L1 -1519 5348 1093 3105 214 176 0 chr6 150602385 150603270 -38676284 - L1PB1 LINE L1 -5817 1046 6 410 347 86 17 chr6 150603704 150604122 -38675432 + L1ME4a LINE L1 4944 5390 -756 636 270 94 88 chr6 150604153 150604697 -38674857 - MLT1H LTR MaLR 0 549 3 382 282 57 53 chr6 150604767 150604976 -38674578 + L1ME4a LINE L1 5484 5693 -428 4229 211 22 60 chr6 150605001 150606148 -38673406 + MER52A LTR ERV1 3 1105 -650 3942 190 43 23 chr6 150606149 150606985 -38672569 + MER52A LTR ERV1 903 1755 0 355 278 48 21 chr6 150607084 150607271 -38672283 + L1ME4a LINE L1 5687 5878 -243 209 282 0 58 chr6 150608663 150608766 -38670788 - MIR SINE MIR -74 188 92 29 47 0 0 chr6 150609109 150609152 -38670402 + AT_rich Low_complexity Low_complexity 1 43 0 341 245 0 86 chr6 150609609 150609772 -38669782 - L1ME LINE L1 -346 5775 5627 23 0 0 0 chr6 150610078 150610101 -38669453 + AT_rich Low_complexity Low_complexity 1 23 0 801 248 50 5 chr6 150610407 150610609 -38668945 + MIR SINE MIR 6 216 -46 571 87 0 43 chr6 150610673 150610765 -38668789 - L1PA8 LINE L1 -6 6166 6079 2312 101 0 0 chr6 150611202 150611499 -38668055 - AluSx SINE Alu -15 297 1 2230 105 0 0 chr6 150611696 150611990 -38667564 - AluSg SINE Alu -16 294 1 2194 96 0 0 chr6 150612184 150612514 -38667040 + AluSx SINE Alu 1 330 0 4080 150 36 26 chr6 150613079 150613908 -38665646 - L1MA8 LINE L1 0 6291 5455 3817 134 21 2 chr6 150614088 150614801 -38664753 - L1MA8 LINE L1 -743 5403 4721 545 264 77 73 chr6 150614994 150615255 -38664299 + L2 LINE L2 3046 3307 -6 327 234 0 11 chr6 150617151 150617245 -38662309 - L1ME LINE L1 -348 5773 5681 410 299 51 15 chr6 150617486 150617683 -38661871 - LTR16A LTR ERVL -20 430 227 777 174 0 0 chr6 150618596 150618717 -38660837 + FLAM_C SINE Alu 1 121 -12 230 313 0 0 chr6 150618931 150619011 -38660543 + L1MDa LINE L1 50 129 -6411 1102 103 20 59 chr6 150619495 150619699 -38659855 - LTR62 LTR ERVK -523 196 1 315 298 35 9 chr6 150619701 150619815 -38659739 + MIR SINE MIR 92 208 -54 436 234 64 0 chr6 150620171 150620265 -38659289 - MIR SINE MIR -31 231 132 2277 110 7 0 chr6 150620602 150620912 -38658642 - AluSx SINE Alu 0 312 1 395 294 43 8 chr6 150622545 150622734 -38656820 - MIR SINE MIR -13 249 2 22 35 0 0 chr6 150623713 150623742 -38655812 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 150623764 150623785 -38655769 + AT_rich Low_complexity Low_complexity 1 21 0 1726 184 6 29 chr6 150623910 150624225 -38655329 - AluJb SINE Alu -4 308 1 2339 90 0 16 chr6 150624699 150625011 -38654543 + AluY SINE Alu 1 307 -4 847 235 43 71 chr6 150625012 150625267 -38654287 - MIR SINE MIR -8 254 7 1197 116 0 0 chr6 150625522 150625694 -38653860 - AluSg/x SINE Alu -7 305 134 281 366 10 0 chr6 150626012 150626113 -38653441 - L2 LINE L2 -16 3256 3155 * 550 301 0 0 chr6 150626107 150626263 -38653291 - MIR SINE MIR -57 205 50 24 53 0 0 chr6 150627600 150627638 -38651916 + AT_rich Low_complexity Low_complexity 1 38 0 4679 63 116 123 chr6 150627673 150628501 -38651053 - LTR12 LTR ERV1 -4 822 1 1957 193 7 30 chr6 150628634 150629039 -38650515 + MSTD LTR MaLR 1 396 0 459 295 159 0 chr6 150629159 150629366 -38650188 - MIR SINE MIR 0 262 23 706 176 0 0 chr6 150630938 150631046 -38648508 - FRAM SINE Alu -35 141 34 189 0 0 0 chr6 150631483 150631504 -38648050 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 383 340 77 19 chr6 150631509 150631665 -38647889 + MIR3 SINE MIR 40 204 -4 460 363 162 12 chr6 150631680 150632173 -38647381 + L3 LINE CR1 922 1488 -89 369 313 8 15 chr6 150632406 150632540 -38647014 + LTR16B LTR ERVL 329 461 -3 23 0 0 0 chr6 150633677 150633700 -38645854 + AT_rich Low_complexity Low_complexity 1 23 0 657 303 26 26 chr6 150633854 150634085 -38645469 + MIR SINE MIR 1 231 -31 22 0 0 0 chr6 150634194 150634216 -38645338 + AT_rich Low_complexity Low_complexity 1 22 0 224 214 54 18 chr6 150635079 150635135 -38644419 - L2 LINE L2 0 3313 3256 635 330 120 33 chr6 150636155 150636798 -38642756 + L2 LINE L2 1463 2161 -1153 2238 175 16 99 chr6 150636816 150637170 -38642384 - Charlie6 DNA MER1_type -39 3461 3180 1637 189 4 0 chr6 150637170 150637450 -38642104 + AluJo SINE Alu 24 304 -8 2238 175 16 99 chr6 150637450 150637722 -38641832 - Charlie6 DNA MER1_type -320 3180 2887 411 185 8 17 chr6 150638188 150638307 -38641247 + CT-rich Low_complexity Low_complexity 2 119 0 746 205 6 6 chr6 150638926 150639097 -38640457 - Charlie6 DNA MER1_type -601 2899 2729 1255 191 27 4 chr6 150639114 150639376 -38640178 + L1M4 LINE L1 5527 5794 -384 10417 199 54 29 chr6 150639380 150641447 -38638107 - Charlie6 DNA MER1_type -766 2734 593 2078 117 7 0 chr6 150641447 150641747 -38637807 + AluSg SINE Alu 1 302 -8 10417 199 54 29 chr6 150641747 150642156 -38637398 - Charlie6 DNA MER1_type -2907 593 196 609 323 148 50 chr6 150642273 150643228 -38636326 + L2 LINE L2 2185 3222 -50 23 0 0 0 chr6 150643804 150643827 -38635727 + AT_rich Low_complexity Low_complexity 1 23 0 2456 153 18 27 chr6 150644510 150644948 -38634606 - Tigger2a DNA MER2_type 0 434 1 1891 269 50 57 chr6 150645268 150646265 -38633289 + L1MEc LINE L1 1370 2322 -3893 2184 127 0 0 chr6 150646265 150646565 -38632989 + AluSg SINE Alu 5 304 -6 1891 269 50 57 chr6 150646565 150646845 -38632709 + L1MEc LINE L1 2322 2602 -3613 1929 161 15 59 chr6 150646850 150647092 -38632462 + MLT2C1 LTR ERVL 1 219 -178 2561 33 0 7 chr6 150647092 150647392 -38632162 + AluY SINE Alu 1 298 -13 1929 161 15 59 chr6 150647392 150647558 -38631996 + MLT2C1 LTR ERVL 219 391 -6 1438 240 79 2 chr6 150647587 150648058 -38631496 + L1MEc LINE L1 2646 3152 -3063 * 7578 176 30 30 chr6 150648044 150649639 -38629915 + L1MCa LINE L1 1 1594 -4832 1916 153 39 31 chr6 150649639 150649998 -38629556 - THE1B LTR MaLR 0 364 3 7934 124 17 1 chr6 150650000 150651198 -38628356 - THE1B-int LTR MaLR 0 1580 1 2285 102 54 23 chr6 150651198 150651551 -38628003 - THE1B LTR MaLR 0 364 1 3407 168 47 49 chr6 150651552 150652596 -38626958 - L1MCa LINE L1 -3695 2734 1689 430 58 0 0 chr6 150652601 150652653 -38626901 + THE1B LTR MaLR 1 52 -312 5066 85 5 0 chr6 150652655 150653304 -38626250 + THE1B-int LTR MaLR 929 1580 0 2279 98 51 31 chr6 150653304 150653660 -38625894 + THE1B LTR MaLR 1 363 -1 7569 236 30 25 chr6 150653661 150654235 -38625319 + L1M4 LINE L1 2454 3023 -3123 3987 177 29 8 chr6 150654235 150654480 -38625074 + MER44D DNA MER2_type 1 239 -2248 1618 130 7 97 chr6 150654480 150654788 -38624766 - AluSx SINE Alu -18 294 15 3987 177 29 8 chr6 150654788 150655260 -38624294 + MER44D DNA MER2_type 239 605 0 7569 236 30 25 chr6 150655260 150656723 -38622831 + L1M4 LINE L1 3023 4508 -1638 2162 118 7 0 chr6 150656723 150657019 -38622535 + AluSx SINE Alu 1 298 -14 7569 236 30 25 chr6 150657019 150657239 -38622315 + L1M4 LINE L1 4508 4725 -1421 411 131 1 0 chr6 150657290 150657363 -38622191 - L1MC2 LINE L1 -197 6147 6076 3952 141 13 13 chr6 150657626 150658842 -38620712 - L1MA5 LINE L1 -360 5940 4728 226 290 0 0 chr6 150660760 150660822 -38618732 - MER5A DNA MER1_type 0 189 128 402 245 201 22 chr6 150660882 150661021 -38618533 + MER5A DNA MER1_type 23 186 -3 1551 229 24 0 chr6 150661700 150662032 -38617522 + MER58B DNA MER1_type 1 340 -1 2392 86 0 3 chr6 150662066 150662367 -38617187 - AluSq SINE Alu -13 300 1 1440 163 129 16 chr6 150662691 150663054 -38616500 - Charlie1b DNA MER1_type -6 517 114 12449 164 25 9 chr6 150663054 150666541 -38613013 + L1MA5A LINE L1 2748 6292 -5 2777 228 53 1 chr6 150666555 150667216 -38612338 + L1ME1 LINE L1 5467 6161 -5 623 126 10 0 chr6 150667238 150667341 -38612213 + L1MB3 LINE L1 6077 6180 -3 520 160 200 0 chr6 150667364 150667464 -38612090 - Charlie1b DNA MER1_type -397 126 7 342 98 0 0 chr6 150667505 150667556 -38611998 + (CA)n Simple_repeat Simple_repeat 1 51 0 516 212 98 98 chr6 150668058 150668251 -38611303 - MLT1K LTR MaLR -41 547 355 321 305 46 0 chr6 150668803 150668943 -38610611 - MIR SINE MIR -67 141 3 880 299 137 20 chr6 150668985 150669429 -38610125 - L2 LINE L2 -1 3312 2817 250 404 18 0 chr6 150669611 150669720 -38609834 - L2 LINE L2 -1 3271 3161 353 0 70 0 chr6 150670783 150670840 -38608714 + (TA)n Simple_repeat Simple_repeat 1 61 0 213 189 47 47 chr6 150670851 150670978 -38608576 + (TA)n Simple_repeat Simple_repeat 2 128 0 28 71 0 0 chr6 150671735 150671791 -38607763 + AT_rich Low_complexity Low_complexity 1 56 0 4849 178 35 6 chr6 150672472 150674026 -38605528 + L1MB1 LINE L1 4565 6167 -1 468 273 119 52 chr6 150674541 150674939 -38604615 - MLT1I LTR MaLR 0 422 3 2022 111 7 4 chr6 150675207 150675513 -38604041 + AluY SINE Alu 1 307 0 191 357 47 34 chr6 150675546 150675781 -38603773 - L2 LINE L2 -1009 2305 2068 365 369 36 54 chr6 150676232 150676568 -38602986 + L2 LINE L2 2554 2883 -431 181 287 93 37 chr6 150676609 150676717 -38602837 + L2 LINE L2 2978 3091 -181 514 316 110 37 chr6 150677443 150677851 -38601703 - L1MEd LINE L1 -4862 1257 820 345 275 138 31 chr6 150679684 150679752 -38599802 - MIR SINE MIR 0 262 203 1896 133 64 28 chr6 150679752 150680113 -38599441 + THE1C LTR MaLR 1 374 -1 345 275 138 31 chr6 150680113 150680204 -38599350 - MIR SINE MIR -59 203 86 7075 51 14 3 chr6 150680292 150681328 -38598226 - L1PA7 LINE L1 0 6154 5115 251 179 38 0 chr6 150681368 150681474 -38598080 + (TA)n Simple_repeat Simple_repeat 2 111 0 233 164 0 36 chr6 150681593 150681648 -38597906 + (TATG)n Simple_repeat Simple_repeat 2 54 0 270 0 0 0 chr6 150682071 150682101 -38597453 + (T)n Simple_repeat Simple_repeat 1 30 0 221 172 25 180 chr6 150682703 150682825 -38596729 - MER5B DNA MER1_type 0 178 76 249 110 49 49 chr6 150682870 150682952 -38596602 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 1553 189 73 53 chr6 150683185 150683637 -38595917 + MER89 LTR ERV1 1 559 0 576 237 0 9 chr6 150684005 150684119 -38595435 + MER8 DNA MER2_type 2 114 -125 246 89 0 44 chr6 150684126 150684171 -38595383 + L1MC4 LINE L1 6661 6703 -1339 231 167 0 0 chr6 150684172 150684214 -38595340 + (TA)n Simple_repeat Simple_repeat 1 42 0 195 129 0 0 chr6 150684259 150684290 -38595264 + (TA)n Simple_repeat Simple_repeat 2 32 0 268 261 0 11 chr6 150684290 150684378 -38595176 + L1MC4 LINE L1 6614 6700 -1342 525 186 0 0 chr6 150684378 150684464 -38595090 + MER8 DNA MER2_type 154 239 0 315 280 280 0 chr6 150685272 150685404 -38594150 - MER5B DNA MER1_type -6 172 4 502 173 188 15 chr6 150685855 150685988 -38593566 + MER5B DNA MER1_type 7 162 -16 288 231 394 12 chr6 150686161 150686321 -38593233 - MIR SINE MIR -13 249 29 534 243 68 20 chr6 150686364 150686514 -38593040 - MIR SINE MIR -27 181 21 22 35 0 0 chr6 150686650 150686679 -38592875 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 150686912 150686933 -38592621 + AT_rich Low_complexity Low_complexity 1 21 0 364 264 8 0 chr6 150687220 150687321 -38592233 - MER5A DNA MER1_type -84 105 4 875 200 54 63 chr6 150687329 150687534 -38592020 + MER63A DNA MER1_type 8 210 0 287 147 73 0 chr6 150688367 150688435 -38591119 + MIR SINE MIR 119 191 -71 356 229 83 28 chr6 150690064 150690173 -38589381 + MIR SINE MIR 20 134 -128 2299 117 5 41 chr6 150690281 150690410 -38589144 - THE1A LTR MaLR 0 355 223 2090 126 10 0 chr6 150690410 150690703 -38588851 - AluSx SINE Alu -16 296 1 2299 117 5 41 chr6 150690703 150690941 -38588613 - THE1A LTR MaLR -132 223 1 253 310 28 0 chr6 150690963 150691034 -38588520 - L2 LINE L2 0 3313 3241 317 224 0 0 chr6 150691050 150691126 -38588428 - L1M4 LINE L1 -1288 4858 4783 342 0 0 0 chr6 150691268 150691306 -38588248 + (GA)n Simple_repeat Simple_repeat 1 38 0 2246 208 115 6 chr6 150691968 150692448 -38587106 - MLT1F1 LTR MaLR -35 532 1 878 257 93 21 chr6 150692888 150693504 -38586050 - L1MC4a LINE L1 -584 5775 5271 1072 148 111 0 chr6 150693525 150693714 -38585840 + L1PB4 LINE L1 5934 6143 -13 188 167 0 48 chr6 150694098 150694140 -38585414 + MIR SINE MIR 119 158 -104 2605 87 31 6 chr6 150694928 150695283 -38584271 + THE1B LTR MaLR 1 364 0 28 29 0 0 chr6 150697187 150697222 -38582332 + AT_rich Low_complexity Low_complexity 1 35 0 211 294 221 0 chr6 150697914 150697982 -38581572 - MIR SINE MIR -79 129 47 377 313 68 0 chr6 150698184 150698347 -38581207 + MIR SINE MIR 41 214 -48 250 219 0 0 chr6 150698347 150698411 -38581143 + L1PB4 LINE L1 6092 6155 -1 32 26 0 0 chr6 150698414 150698453 -38581101 + AT_rich Low_complexity Low_complexity 1 39 0 280 265 15 0 chr6 150698469 150698537 -38581017 + MIR SINE MIR 194 262 0 220 340 32 11 chr6 150698538 150698632 -38580922 - MIR SINE MIR -26 236 141 401 236 236 0 chr6 150698743 150698849 -38580705 + MER58C DNA MER1_type 80 210 -5 309 282 24 136 chr6 150698943 150698993 -38580561 - L2 LINE L2 -1 3271 3217 1478 201 72 37 chr6 150698993 150699342 -38580212 - MLT1A1 LTR MaLR 0 365 5 309 282 24 136 chr6 150699342 150699585 -38579969 - L2 LINE L2 -55 3217 3011 182 393 54 0 chr6 150699825 150699937 -38579617 - L2 LINE L2 -557 2757 2640 757 305 48 57 chr6 150699937 150700600 -38578954 + L1MEc LINE L1 43 699 -5697 655 259 46 49 chr6 150700599 150700966 -38578588 + L1M4 LINE L1 3014 3379 -2767 * 2609 184 41 11 chr6 150701087 150701629 -38577925 - MER89 LTR ERV1 -1 558 1 303 380 48 0 chr6 150702253 150702440 -38577114 - L2 LINE L2 -778 2536 2341 1880 151 28 0 chr6 150702603 150702888 -38576666 - AluSx SINE Alu -14 298 6 448 239 155 37 chr6 150703151 150703349 -38576205 + MIR SINE MIR 42 262 0 26 0 0 0 chr6 150703396 150703422 -38576132 + AT_rich Low_complexity Low_complexity 1 26 0 240 318 15 15 chr6 150703665 150703731 -38575823 - L2 LINE L2 -13 3259 3194 194 309 29 66 chr6 150703761 150704004 -38575550 - L2 LINE L2 0 3313 3080 21 36 0 0 chr6 150704074 150704102 -38575452 + AT_rich Low_complexity Low_complexity 1 28 0 208 352 120 7 chr6 150704510 150704652 -38574902 - MIR3 SINE MIR -7 201 44 198 222 167 0 chr6 150704692 150704746 -38574808 - L2 LINE L2 -3 3269 3207 237 174 43 58 chr6 150705307 150705376 -38574178 + AluSc SINE Alu 188 255 -44 2457 286 71 40 chr6 150705386 150706573 -38572981 + L2 LINE L2 2091 3313 0 2223 89 30 10 chr6 150706623 150706927 -38572627 + AluY SINE Alu 1 310 -1 383 38 19 0 chr6 150707114 150707167 -38572387 + (GA)n Simple_repeat Simple_repeat 1 54 0 36 33 0 16 chr6 150708190 150708214 -38571340 + AT_rich Low_complexity Low_complexity 1 24 -36 1979 163 0 9 chr6 150708214 150708557 -38570997 - L1PA16 LINE L1 -10 6156 5817 36 33 0 16 chr6 150708557 150708593 -38570961 + AT_rich Low_complexity Low_complexity 24 60 0 1798 149 111 33 chr6 150708698 150709095 -38570459 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr6 150710241 150710263 -38569291 + AT_rich Low_complexity Low_complexity 1 22 0 213 256 194 22 chr6 150710445 150710564 -38568990 + MER5A DNA MER1_type 6 152 -37 1932 141 3 69 chr6 150710567 150710928 -38568626 - MER1B DNA MER1_type 0 337 1 432 326 119 5 chr6 150711026 150711244 -38568310 - MIR SINE MIR 0 262 20 23 0 0 0 chr6 150712800 150712823 -38566731 + AT_rich Low_complexity Low_complexity 1 23 0 722 306 66 40 chr6 150713206 150713553 -38566001 + L1MEd LINE L1 2 357 -5762 332 47 0 0 chr6 150713566 150713609 -38565945 - MADE1 DNA Mariner -37 43 1 389 254 85 79 chr6 150713806 150714030 -38565524 + L1MEd LINE L1 646 867 -5252 1523 169 87 47 chr6 150714030 150714176 -38565378 - MER46B DNA MER2_type -2496 235 191 1722 167 16 32 chr6 150714176 150714488 -38565066 - AluJo SINE Alu -5 307 1 1523 169 87 47 chr6 150714488 150714685 -38564869 - MER46B DNA MER2_type -2540 191 3 389 254 85 79 chr6 150714685 150714956 -38564598 + L1MEd LINE L1 867 1144 -4975 533 316 60 21 chr6 150714991 150715323 -38564231 + L1MEd LINE L1 1216 1560 -4569 477 186 47 0 chr6 150715489 150715575 -38563979 + MLT1D LTR MaLR 3 92 -413 3241 123 98 9 chr6 150715626 150716180 -38563374 - L1PB3 LINE L1 0 6154 5552 348 182 29 118 chr6 150716182 150716395 -38563159 + MLT1E2 LTR MaLR 44 243 -262 726 289 107 32 chr6 150716489 150717718 -38561836 + L1MEd LINE L1 2131 3451 -2678 273 250 0 0 chr6 150718031 150718099 -38561455 + MLT1J2 LTR MaLR 363 430 -20 407 272 109 20 chr6 150718152 150718354 -38561200 + L1MEd LINE L1 3530 3749 -2380 196 272 221 22 chr6 150718392 150718528 -38561026 - L2 LINE L2 0 3313 3151 200 383 37 0 chr6 150718533 150718640 -38560914 - L3 LINE CR1 -545 1032 922 24 32 0 0 chr6 150719056 150719087 -38560467 + AT_rich Low_complexity Low_complexity 1 31 0 380 326 25 36 chr6 150719306 150719599 -38559955 - L1M4 LINE L1 -1758 4388 4098 2433 40 0 56 chr6 150719599 150719923 -38559631 - AluY SINE Alu -5 306 1 380 326 25 36 chr6 150719923 150719988 -38559566 - L1M4 LINE L1 -2048 4098 4034 350 285 54 39 chr6 150720059 150720189 -38559365 - MIR SINE MIR -108 154 23 227 261 77 31 chr6 150720235 150720365 -38559189 + L1 LINE L1 2267 2402 -3744 2276 117 0 0 chr6 150720767 150721075 -38558479 + AluSq SINE Alu 3 310 -3 9735 93 7 1 chr6 150721362 150723513 -38556041 + L1PA7 LINE L1 3955 6140 -14 2033 136 0 3 chr6 150723728 150724023 -38555531 + AluSg SINE Alu 1 294 -16 374 259 193 49 chr6 150724082 150724387 -38555167 + L1ME4a LINE L1 5565 5913 -208 2778 98 2 10 chr6 150725096 150725496 -38554058 + THE1B-int LTR MaLR 1184 1580 0 2143 140 31 14 chr6 150725496 150725853 -38553701 + THE1B LTR MaLR 1 363 -1 231 356 11 0 chr6 150725854 150725941 -38553613 + L2 LINE L2 2994 3081 -191 284 267 195 24 chr6 150727005 150727152 -38552402 + HAL1b LINE L1 1206 1327 -21 2040 136 54 23 chr6 150727152 150727505 -38552049 + THE1B LTR MaLR 1 364 0 11715 92 7 1 chr6 150727505 150729075 -38550479 + THE1B-int LTR MaLR 1 1580 0 1925 122 90 32 chr6 150729075 150729419 -38550135 + THE1B LTR MaLR 1 364 0 284 267 195 24 chr6 150729419 150729650 -38549904 + HAL1b LINE L1 1326 1339 -9 2086 121 34 0 chr6 150731379 150731676 -38547878 + AluSq SINE Alu 1 307 -6 833 172 89 6 chr6 150732552 150732721 -38546833 - MER5A DNA MER1_type 0 189 7 627 160 0 0 chr6 150732785 150732891 -38546663 + L1 LINE L1 3818 3923 -2223 341 303 104 39 chr6 150732897 150733128 -38546426 - L1M4 LINE L1 -678 5506 5261 34 0 0 0 chr6 150733201 150733235 -38546319 + AT_rich Low_complexity Low_complexity 1 34 0 1165 153 0 0 chr6 150733338 150733667 -38545887 - AluSg/x SINE Alu 0 462 134 263 133 183 0 chr6 150733991 150734051 -38545503 - MER41B LTR ERV1 -88 547 477 353 311 35 46 chr6 150734073 150734333 -38545221 - L1M4 LINE L1 -1482 4664 4408 623 288 106 18 chr6 150735285 150735700 -38543854 + L1ME4a LINE L1 5458 5919 -202 822 330 14 4 chr6 150736026 150736305 -38543249 + LTR16A LTR ERVL 119 400 -50 355 381 29 14 chr6 150736336 150736546 -38543008 - MIR SINE MIR -43 219 7 285 305 47 23 chr6 150736577 150736705 -38542849 + L2 LINE L2 3160 3290 -23 1660 202 46 6 chr6 150737362 150737713 -38541841 + MLT1A1 LTR MaLR 1 365 0 2155 122 0 0 chr6 150738468 150738762 -38540792 + AluSx SINE Alu 12 305 -7 2385 108 30 25 chr6 150739077 150739439 -38540115 - THE1B LTR MaLR 0 364 1 30 45 0 0 chr6 150739523 150739567 -38539987 + AT_rich Low_complexity Low_complexity 1 44 0 231 167 0 0 chr6 150739924 150739966 -38539588 + (CA)n Simple_repeat Simple_repeat 1 42 0 473 194 10 20 chr6 150741465 150741563 -38537991 - Tigger7 DNA MER2_type -1 2586 2490 * 1460 196 4 15 chr6 150741562 150741832 -38537722 - Tigger7 DNA MER2_type -2220 267 1 1070 258 21 14 chr6 150742685 150742968 -38536586 + MLT1J1 LTR MaLR 3 287 -159 448 319 70 26 chr6 150743688 150743917 -38535637 - L3 LINE CR1 -1 1576 1338 541 29 0 0 chr6 150743979 150744049 -38535505 - L1PA4 LINE L1 -3 6152 6083 719 199 177 16 chr6 150745314 150745500 -38534054 - MIR SINE MIR -28 234 19 288 368 63 45 chr6 150745809 150746206 -38533348 - L2 LINE L2 -338 2976 2573 345 100 0 0 chr6 150746477 150746527 -38533027 + (TG)n Simple_repeat Simple_repeat 2 51 0 194 98 78 0 chr6 150746527 150746578 -38532976 + (TA)n Simple_repeat Simple_repeat 1 55 0 809 306 67 17 chr6 150747551 150747911 -38531643 + MLT1I LTR MaLR 32 409 0 507 233 43 17 chr6 150748147 150748263 -38531291 + MIR SINE MIR 4 122 -140 1042 39 0 0 chr6 150748442 150748571 -38530983 - L1P3 LINE L1 -683 5489 5361 1343 74 40 20 chr6 150748571 150748772 -38530782 + L1PA8 LINE L1 5960 6165 -7 466 364 38 0 chr6 150748873 150749109 -38530445 + L2 LINE L2 2633 2877 -437 1974 168 39 0 chr6 150749200 150749534 -38530020 - MER7A DNA MER2_type -1 345 1 205 162 0 0 chr6 150749534 150749571 -38529983 + (TG)n Simple_repeat Simple_repeat 2 38 0 1517 182 134 66 chr6 150749572 150749995 -38529559 - MLT2B1 LTR ERVL -46 508 60 6684 132 14 11 chr6 150750018 150751629 -38527925 - L1MA3 LINE L1 0 6305 4691 21 36 0 0 chr6 150751840 150751868 -38527686 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr6 150752071 150752094 -38527460 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 285 29 0 0 chr6 150752093 150752127 -38527427 + (TG)n Simple_repeat Simple_repeat 1 34 0 3720 256 32 19 chr6 150752278 150752415 -38527139 + L1MEc LINE L1 35 169 -6227 2365 184 15 21 chr6 150752415 150752883 -38526671 - MLT1C LTR MaLR 0 467 3 3720 256 32 19 chr6 150752883 150753880 -38525674 + L1MEc LINE L1 169 1183 -5213 3959 178 53 75 chr6 150753952 150755075 -38524479 + L1MA9 LINE L1 5086 6194 -118 363 288 94 69 chr6 150755110 150755343 -38524211 + L1 LINE L1 3866 4104 -2042 25 0 0 0 chr6 150756814 150756839 -38522715 + AT_rich Low_complexity Low_complexity 1 25 0 2143 62 4 0 chr6 150756893 150757150 -38522404 - AluY SINE Alu -19 292 35 3103 80 0 0 chr6 150757873 150758271 -38521283 + MLT2A1 LTR ERVL 1 398 -46 222 118 0 0 chr6 150758284 150758318 -38521236 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 326 102 0 0 chr6 150758321 150758370 -38521184 + MLT2A1 LTR ERVL 390 438 -6 375 219 16 57 chr6 150758585 150758708 -38520846 + LTR16C LTR ERVL 360 477 -14 235 185 19 0 chr6 150758843 150758897 -38520657 + LTR49 LTR ERV1 44 98 -497 448 158 0 0 chr6 150758939 150759015 -38520539 + MLT1D LTR MaLR 430 505 0 239 221 10 58 chr6 150759295 150759399 -38520155 + (CATATA)n Simple_repeat Simple_repeat 1 99 0 247 154 31 0 chr6 150759408 150759473 -38520081 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 398 255 40 40 chr6 150759560 150759709 -38519845 + L1ME LINE L1 5562 5710 -411 24 32 0 0 chr6 150759917 150759948 -38519606 + AT_rich Low_complexity Low_complexity 1 31 0 1045 135 6 12 chr6 150760624 150760635 -38518919 - AluSq SINE Alu -18 295 285 342 0 0 0 chr6 150760635 150760673 -38518881 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 1045 135 6 12 chr6 150760673 150760824 -38518730 - AluSq SINE Alu -28 285 134 195 289 39 0 chr6 150761471 150761523 -38518031 - L2 LINE L2 -78 3194 3141 773 188 0 0 chr6 150761735 150761868 -38517686 + FLAM_A SINE Alu 1 133 0 1868 254 21 50 chr6 150762405 150762880 -38516674 - L1ME2 LINE L1 -9 6224 5737 256 74 0 37 chr6 150762880 150762934 -38516620 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 2120 100 0 28 chr6 150762937 150763227 -38516327 - AluSq SINE Alu -31 282 1 1868 254 21 50 chr6 150763227 150763409 -38516145 - L1ME2 LINE L1 -498 5735 5582 2439 105 8 8 chr6 150763411 150763764 -38515790 - THE1A LTR MaLR -2 353 1 11446 101 9 5 chr6 150763764 150765336 -38514218 - THE1A-int LTR MaLR 0 1580 1 2476 105 11 6 chr6 150765336 150765689 -38513865 - THE1A LTR MaLR 0 355 1 2253 208 99 58 chr6 150765701 150766253 -38513301 - L1ME2 LINE L1 -674 5561 4976 1692 104 34 160 chr6 150766253 150766609 -38512945 - AluY SINE Alu 0 311 1 2253 208 99 58 chr6 150766609 150767083 -38512471 - L1ME2 LINE L1 -1259 4976 4523 897 280 56 28 chr6 150767082 150767514 -38512040 - L1ME2 LINE L1 -2226 3989 3546 * 22 35 0 0 chr6 150767547 150767576 -38511978 + AT_rich Low_complexity Low_complexity 1 29 0 42340 37 23 5 chr6 150767576 150773616 -38505938 - L1PA3 LINE L1 -4 6151 3 1738 266 121 10 chr6 150773621 150774701 -38504853 - L1ME2 LINE L1 -2726 3489 2271 4177 80 13 10 chr6 150774718 150775317 -38504237 - L1MA1 LINE L1 0 6302 5702 3917 122 7 5 chr6 150775318 150776235 -38503319 - L1M1 LINE L1 -521 5781 4864 320 262 196 25 chr6 150776212 150776498 -38503056 - L1ME2 LINE L1 -4059 2337 2003 * 1229 276 62 58 chr6 150776520 150777845 -38501709 - L1ME2 LINE L1 -4343 2053 660 435 379 17 7 chr6 150778009 150778310 -38501244 - L1ME2 LINE L1 -6056 340 37 670 211 0 115 chr6 150778326 150778534 -38501020 + L2 LINE L2 3113 3296 -17 2067 141 3 3 chr6 150779725 150780037 -38499517 + AluSx SINE Alu 1 312 0 566 256 122 90 chr6 150780984 150781346 -38498208 + MLT1L LTR MaLR 20 400 -215 2025 149 40 56 chr6 150781346 150781742 -38497812 - MLT1B LTR MaLR 0 390 1 566 256 122 90 chr6 150781742 150781812 -38497742 + MLT1L LTR MaLR 400 466 -149 16443 195 43 8 chr6 150782783 150788126 -38491428 + L1PA13 LINE L1 1 5557 -1240 2652 131 25 7 chr6 150788126 150788564 -38490990 + L1PA13 LINE L1 6361 6811 -3 23 54 0 0 chr6 150788609 150788646 -38490908 + AT_rich Low_complexity Low_complexity 1 37 0 2112 145 0 13 chr6 150788773 150789083 -38490471 + AluSx SINE Alu 1 306 -6 264 185 0 0 chr6 150789498 150789552 -38490002 + (TA)n Simple_repeat Simple_repeat 2 55 0 25 51 0 0 chr6 150791250 150791289 -38488265 + AT_rich Low_complexity Low_complexity 1 39 0 227 330 97 49 chr6 150793065 150793250 -38486304 + MIR3 SINE MIR 10 203 -5 216 175 18 35 chr6 150794078 150794135 -38485419 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 1106 186 44 135 chr6 150794151 150794334 -38485220 - MLT2C2 LTR ERVL -48 416 218 2338 55 0 0 chr6 150794334 150794626 -38484928 - L1PA5 LINE L1 0 6154 5863 1106 186 44 135 chr6 150794626 150794900 -38484654 - MLT2C2 LTR ERVL -246 218 1 297 103 17 11 chr6 150794948 150795190 -38484364 + AluSg SINE Alu 1 302 0 358 297 131 42 chr6 150795683 150795919 -38483635 + MIR SINE MIR 6 262 0 25 31 0 0 chr6 150796625 150796657 -38482897 + AT_rich Low_complexity Low_complexity 1 32 0 463 266 27 81 chr6 150796913 150797172 -38482382 + MIR SINE MIR 8 252 -10 2289 83 3 7 chr6 150797789 150798077 -38481477 - AluSg SINE Alu -11 299 13 22 35 0 0 chr6 150798078 150798107 -38481447 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr6 150798700 150798731 -38480823 + AT_rich Low_complexity Low_complexity 1 31 0 518 211 116 27 chr6 150799458 150799605 -38479949 - MIR SINE MIR -25 237 78 584 216 174 5 chr6 150799922 150800014 -38479540 + L1MC4 LINE L1 7807 7882 -160 360 43 0 0 chr6 150800014 150800060 -38479494 + (CA)n Simple_repeat Simple_repeat 1 46 0 584 216 174 5 chr6 150800060 150800157 -38479397 + L1MC4 LINE L1 7882 8028 -14 1541 295 56 67 chr6 150800933 150801496 -38478058 + L1MEc LINE L1 39 607 -5789 2522 131 45 17 chr6 150801496 150801916 -38477638 + MSTB1 LTR MaLR 1 432 0 1541 295 56 67 chr6 150801916 150802554 -38477000 + L1MEc LINE L1 607 1227 -5169 1645 297 42 29 chr6 150802616 150803243 -38476311 - MLT2F LTR ERVL -2 661 27 5898 256 62 38 chr6 150803260 150805138 -38474416 - ERVL-F LTR ERVL -7 5757 3835 2299 261 34 29 chr6 150805181 150805721 -38473833 + L1M4 LINE L1 4129 4676 -1470 2177 121 0 13 chr6 150805721 150806028 -38473526 + AluSx SINE Alu 1 303 -9 2299 261 34 29 chr6 150806028 150806439 -38473115 + L1M4 LINE L1 4676 5084 -1062 1432 171 15 89 chr6 150806443 150806770 -38472784 + MER31A LTR ERV1 62 366 -102 863 185 12 40 chr6 150806754 150807006 -38472548 - MLT1A2 LTR MaLR -84 306 1 * 1635 191 0 44 chr6 150808236 150808555 -38470999 - AluJo SINE Alu -5 307 3 182 226 38 19 chr6 150809018 150809071 -38470483 + L2 LINE L2 3250 3303 -10 191 213 0 21 chr6 150809499 150809546 -38470008 + MIR SINE MIR 31 76 -186 187 342 107 27 chr6 150810759 150810908 -38468646 - L2 LINE L2 -675 2639 2479 667 293 24 32 chr6 150811252 150811434 -38468120 - MIR SINE MIR 0 262 81 1231 218 44 93 chr6 150811434 150812004 -38467550 + MER34 LTR ERV1 1 542 0 667 293 24 32 chr6 150812004 150812074 -38467480 - MIR SINE MIR -181 81 12 24 53 0 0 chr6 150813038 150813076 -38466478 + AT_rich Low_complexity Low_complexity 1 38 0 290 295 39 0 chr6 150813991 150814069 -38465485 + MIR SINE MIR 84 164 -98 748 192 10 31 chr6 150815015 150815208 -38464346 - Charlie1 DNA MER1_type -1 2760 2572 2580 184 18 10 chr6 150815230 150815752 -38463802 - LTR27 LTR ERV1 0 501 3 296 164 104 0 chr6 150815757 150815824 -38463730 - Charlie1 DNA MER1_type -2596 165 92 626 273 0 13 chr6 150815992 150816142 -38463412 + MIR SINE MIR 49 196 -66 1601 187 67 23 chr6 150816214 150816231 -38463323 - MLT2D LTR ERVL -40 374 359 246 32 0 0 chr6 150816231 150816262 -38463292 + (CA)n Simple_repeat Simple_repeat 2 32 0 1601 187 67 23 chr6 150816262 150816586 -38462968 - MLT2D LTR ERVL -55 359 18 6126 112 7 27 chr6 150816596 150816910 -38462644 - MER4D LTR ERV1 -1 902 583 1509 97 60 0 chr6 150816910 150817126 -38462428 - MER30 DNA MER1_type 0 230 2 6126 112 7 27 chr6 150817126 150817732 -38461822 - MER4D LTR ERV1 -320 583 1 186 269 19 0 chr6 150817732 150817784 -38461770 + MIR SINE MIR 210 262 0 5426 86 19 4 chr6 150817994 150818749 -38460805 - MER4E LTR ERV1 0 766 1 291 54 0 0 chr6 150818936 150818973 -38460581 + (CA)n Simple_repeat Simple_repeat 2 38 0 26 64 0 0 chr6 150818979 150819026 -38460528 + AT_rich Low_complexity Low_complexity 1 47 0 3309 132 46 6 chr6 150819738 150820361 -38459193 - MER39 LTR ERV1 -11 696 1 339 299 147 15 chr6 150820835 150821039 -38458515 + MIR SINE MIR 20 250 -12 293 212 0 0 chr6 150821651 150821717 -38457837 - AluS SINE Alu -2 298 233 445 245 45 105 chr6 150823895 150824095 -38455459 + MER5A DNA MER1_type 2 189 0 22 35 0 0 chr6 150824748 150824777 -38454777 + AT_rich Low_complexity Low_complexity 1 29 0 1581 191 0 21 chr6 150824957 150825239 -38454315 + AluJo SINE Alu 1 276 -36 2017 112 7 0 chr6 150826906 150827240 -38452314 + AluSc SINE Alu 1 336 0 2420 59 0 0 chr6 150827637 150827927 -38451627 - AluY SINE Alu -21 290 1 24 0 0 0 chr6 150828978 150829002 -38450552 + AT_rich Low_complexity Low_complexity 1 24 0 261 57 0 0 chr6 150829210 150829245 -38450309 + (CA)n Simple_repeat Simple_repeat 1 35 0 2088 226 83 17 chr6 150830325 150830856 -38448698 + MLT1F1 LTR MaLR 1 566 -1 402 244 0 0 chr6 150831181 150831271 -38448283 - L1MD3 LINE L1 -14 7981 7892 200 216 39 20 chr6 150832630 150832681 -38446873 + L2 LINE L2 3262 3313 0 340 287 11 0 chr6 150833750 150833844 -38445710 - L2 LINE L2 -1 3271 3177 481 249 106 32 chr6 150834361 150834578 -38444976 + MIR SINE MIR 5 237 -25 230 273 112 28 chr6 150835333 150835476 -38444078 + L2 LINE L2 1731 1885 -1429 1155 29 0 0 chr6 150837573 150837709 -38441845 - AluY SINE Alu -4 307 172 906 223 50 94 chr6 150837959 150838340 -38441214 - MLT1A1 LTR MaLR 0 365 2 438 298 96 6 chr6 150838562 150838740 -38440814 + MIR SINE MIR 32 225 -37 231 195 49 6 chr6 150838879 150839043 -38440511 + (TA)n Simple_repeat Simple_repeat 2 172 0 370 236 0 0 chr6 150843623 150843695 -38435859 - L2 LINE L2 0 3313 3242 1924 78 8 4 chr6 150843891 150844147 -38435407 - AluY SINE Alu -11 300 44 2235 149 18 33 chr6 150844639 150845035 -38434519 - MLT1B LTR MaLR 0 390 1 1736 159 62 10 chr6 150845854 150846143 -38433411 - AluJo SINE Alu -8 304 1 270 235 123 0 chr6 150846399 150846480 -38433074 + MER46C DNA MER2_type 206 296 -42 279 263 0 11 chr6 150846561 150846656 -38432898 - L1ME LINE L1 -600 5562 5469 469 305 83 70 chr6 150846719 150847175 -38432379 - L1ME LINE L1 -923 5223 4762 934 193 52 0 chr6 150847570 150847762 -38431792 + MSTB1 LTR MaLR 1 202 -230 872 185 60 0 chr6 150847769 150847920 -38431634 + FRAM SINE Alu 9 168 -8 838 156 0 0 chr6 150847927 150848055 -38431499 + FLAM_C SINE Alu 1 128 -15 1450 192 87 32 chr6 150848615 150848985 -38430569 - MLT1B LTR MaLR 0 390 1 421 310 137 2 chr6 150848988 150849250 -38430304 + L2 LINE L2 2003 2336 -978 874 276 82 26 chr6 150849255 150849596 -38429958 + L2 LINE L2 1197 1556 -1758 2193 225 21 11 chr6 150849647 150850172 -38429382 - MLT1E2 LTR MaLR -96 530 1 2872 276 135 29 chr6 150850184 150851673 -38427881 + L2 LINE L2 1596 3302 -11 1533 294 66 38 chr6 150851686 150852615 -38426939 + L2 LINE L2 2345 3290 -23 222 150 0 0 chr6 150853938 150853978 -38425576 + (T)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr6 150856027 150856055 -38423499 + AT_rich Low_complexity Low_complexity 1 28 0 183 286 0 0 chr6 150856944 150856986 -38422568 - MIR SINE MIR -6 256 215 * 185 268 99 28 chr6 150856955 150857026 -38422528 - L2 LINE L2 -23 3290 3215 383 344 61 6 chr6 150857126 150857306 -38422248 + MIR3 SINE MIR 19 208 0 180 53 79 0 chr6 150909646 150909684 -38369870 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 180 111 0 0 chr6 150909720 150909747 -38369807 + (CA)n Simple_repeat Simple_repeat 1 27 0 225 229 82 0 chr6 150909758 150909819 -38369735 + tRNA-Ala-GCG tRNA tRNA 1 66 -9 1434 245 56 20 chr6 150910187 150910726 -38368828 + L1MC2 LINE L1 5408 5965 -379 182 174 22 0 chr6 150912410 150912456 -38367098 + GA-rich Low_complexity Low_complexity 4 50 0 422 97 194 10 chr6 150914589 150914692 -38364862 + LTR9B LTR ERV1 445 566 -78 30 45 0 0 chr6 150916347 150916391 -38363163 + AT_rich Low_complexity Low_complexity 1 44 0 1289 153 3 62 chr6 150916993 150917300 -38362254 + L1MB8 LINE L1 5881 6169 -9 376 206 87 0 chr6 150919585 150919677 -38359877 + MER5B DNA MER1_type 1 100 -78 226 352 31 23 chr6 150920770 150920898 -38358656 + L3 LINE CR1 83 211 -1366 2217 85 7 0 chr6 150920922 150921229 -38358325 + AluSq SINE Alu 1 309 0 1587 173 13 13 chr6 150921232 150921550 -38358004 + L1MA9 LINE L1 5995 6312 0 396 255 66 0 chr6 150922260 150922366 -38357188 + L2 LINE L2 2658 2770 -544 1373 221 53 9 chr6 150922402 150922741 -38356813 - MLT1A1 LTR MaLR -5 360 7 1426 216 45 77 chr6 150922760 150923270 -38356284 + L2 LINE L2 2820 3313 0 336 241 85 28 chr6 150923477 150923618 -38355936 - MER103 DNA DNA -1 165 17 569 288 102 30 chr6 150924122 150924358 -38355196 + MIR SINE MIR 10 262 0 32 43 0 0 chr6 150925073 150925119 -38354435 + AT_rich Low_complexity Low_complexity 1 46 0 210 105 0 0 chr6 150925303 150925341 -38354213 + (TC)n Simple_repeat Simple_repeat 1 38 0 1190 325 121 47 chr6 150925356 150926334 -38353220 + L2 LINE L2 1915 2964 -350 318 195 11 46 chr6 150926345 150926432 -38353122 + MER94 DNA DNA 2 85 -49 214 351 11 21 chr6 150926436 150926530 -38353024 + L2 LINE L2 2980 3072 -200 208 311 33 0 chr6 150926628 150926689 -38352865 + polypurine Low_complexity Low_complexity 2 64 0 884 70 86 0 chr6 150927633 150927761 -38351793 + MER85 DNA T2_type 1 139 0 524 242 23 15 chr6 150929075 150929207 -38350347 - MIR SINE MIR -56 206 74 252 295 0 0 chr6 150929460 150929521 -38350033 + L2 LINE L2 3252 3312 -1 275 241 147 26 chr6 150930282 150930398 -38349156 + MIR SINE MIR 9 138 -124 207 224 184 26 chr6 150930622 150930698 -38348856 - MIR SINE MIR -44 218 131 1220 106 0 62 chr6 150930698 150930924 -38348630 - L1MA9 LINE L1 0 6312 6101 482 148 23 0 chr6 150930971 150931059 -38348495 - L1MA9 LINE L1 -204 6108 6019 391 305 80 28 chr6 150931919 150932132 -38347422 + L2 LINE L2 2544 2767 -547 446 299 188 36 chr6 150933225 150933449 -38346105 + L2 LINE L2 3015 3272 0 1735 180 17 14 chr6 150935346 150935640 -38343914 - AluJo SINE Alu -13 299 5 3913 124 142 46 chr6 150936547 150936917 -38342637 - MER4D LTR ERV1 0 903 570 2599 46 0 3 chr6 150936917 150937223 -38342331 - AluY SINE Alu -6 305 1 3913 124 142 46 chr6 150937223 150937676 -38341878 - MER4D LTR ERV1 -333 570 1 22 70 0 0 chr6 150939109 150939152 -38340402 + AT_rich Low_complexity Low_complexity 1 43 0 197 329 41 0 chr6 150940069 150940142 -38339412 - L2 LINE L2 -2 3311 3236 404 333 0 0 chr6 150940221 150940323 -38339231 - L2 LINE L2 -2 3270 3169 773 174 0 0 chr6 150940485 150940617 -38338937 - FLAM_C SINE Alu -11 132 1 1871 174 62 3 chr6 150941499 150941867 -38337687 - MLT1B LTR MaLR 0 390 1 1355 135 17 48 chr6 150942141 150942371 -38337183 + AluSg/x SINE Alu 73 295 -17 4232 127 18 1 chr6 150942416 150943099 -38336455 - L1MA3 LINE L1 0 6305 5612 319 281 168 54 chr6 150944084 150944251 -38335303 + HAL1 LINE L1 7 192 -2315 2256 101 3 7 chr6 150944316 150944613 -38334941 + AluSq SINE Alu 1 296 -17 484 297 18 40 chr6 150944641 150944863 -38334691 + HAL1 LINE L1 272 488 -2019 343 232 28 85 chr6 150945101 150945312 -38334242 + HAL1 LINE L1 1617 1815 -692 344 180 194 28 chr6 150945470 150945687 -38333867 + HAL1 LINE L1 2074 2507 0 225 224 17 17 chr6 150947161 150947219 -38332335 - Tigger5 DNA MER2_type 0 2323 2266 * 327 175 0 0 chr6 150947215 150947272 -38332282 + Tigger5 DNA MER2_type 2261 2317 -6 368 241 0 0 chr6 150947274 150947353 -38332201 - Tigger5 DNA MER2_type -2244 79 1 962 197 56 0 chr6 150947479 150947677 -38331877 - MER3 DNA MER1_type 0 209 1 180 0 0 0 chr6 150947854 150947874 -38331680 + (A)n Simple_repeat Simple_repeat 1 20 0 440 331 88 49 chr6 150948834 150949118 -38330436 - L2 LINE L2 0 3272 2978 654 276 32 16 chr6 150950020 150950205 -38329349 - MER5A DNA MER1_type 0 189 2 15263 71 7 0 chr6 150951312 150954130 -38325424 - L1PA6 LINE L1 -1 6153 3322 330 275 80 29 chr6 150954635 150954773 -38324781 + MIR SINE MIR 98 242 -20 293 273 0 0 chr6 150954867 150954933 -38324621 - MIR SINE MIR 0 262 197 659 316 72 8 chr6 150957880 150958117 -38321437 + MIR SINE MIR 1 252 -10 252 293 19 57 chr6 150958150 150958256 -38321298 - MIR SINE MIR -79 183 82 337 302 0 12 chr6 150959155 150959241 -38320313 + MIR SINE MIR 108 192 -70 217 313 18 80 chr6 150959976 150960088 -38319466 - L2 LINE L2 -10 3262 3158 420 292 87 6 chr6 150960141 150960302 -38319252 - MIR SINE MIR -81 181 8 2417 98 0 0 chr6 150960382 150960687 -38318867 + AluSc SINE Alu 1 305 -4 1464 153 52 12 chr6 150961602 150961850 -38317704 + AluJo SINE Alu 1 258 -54 245 229 229 68 chr6 150961967 150962085 -38317469 - L3b LINE CR1 -96 1487 1351 189 0 0 0 chr6 150963248 150963269 -38316285 + (T)n Simple_repeat Simple_repeat 1 21 0 728 232 25 84 chr6 150964827 150965064 -38314490 + MER58A DNA MER1_type 1 223 -1 539 213 57 0 chr6 150965410 150965532 -38314022 - MER94 DNA DNA 0 134 6 1034 105 48 70 chr6 150965596 150965824 -38313730 + L1MA8 LINE L1 6047 6269 -22 328 281 79 0 chr6 150967576 150967665 -38311889 - L2 LINE L2 -23 3249 3154 261 328 0 15 chr6 150967790 150967857 -38311697 - L2 LINE L2 -178 3094 3029 351 325 102 5 chr6 150969113 150969319 -38310235 - L2 LINE L2 -868 2446 2221 304 296 237 0 chr6 150970459 150970645 -38308909 + MIR SINE MIR 20 249 -13 203 273 91 0 chr6 150970863 150970918 -38308636 + MER5B DNA MER1_type 84 143 -35 571 246 120 11 chr6 150971008 150971183 -38308371 - MIR SINE MIR -54 208 15 28 48 0 0 chr6 150971285 150971327 -38308227 + AT_rich Low_complexity Low_complexity 1 42 0 280 309 157 10 chr6 150972457 150972661 -38306893 + MIR SINE MIR 29 262 0 278 349 155 22 chr6 150972864 150973219 -38306335 - L2 LINE L2 -1556 1758 1357 234 239 75 30 chr6 150974087 150974154 -38305400 - L2 LINE L2 -17 3255 3186 2421 65 0 0 chr6 150974537 150974830 -38304724 - AluY SINE Alu -18 293 1 344 206 123 90 chr6 150975184 150975339 -38304215 - MIR SINE MIR -5 257 98 260 323 65 0 chr6 150975499 150975592 -38303962 - L2 LINE L2 0 3313 3215 1282 136 59 36 chr6 150975619 150975840 -38303714 + AluJo SINE Alu 6 231 -81 28 0 0 0 chr6 150976752 150976780 -38302774 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr6 150976863 150976905 -38302649 + AT_rich Low_complexity Low_complexity 1 42 0 489 242 42 25 chr6 150977168 150977288 -38302266 + L2 LINE L2 3192 3313 0 1435 181 44 24 chr6 150977830 150978128 -38301426 + AluJo SINE Alu 3 306 -6 1016 220 68 56 chr6 150978392 150978787 -38300767 - MER20B DNA MER1_type -6 777 378 4178 109 18 0 chr6 150978867 150979492 -38300062 + L1PB1 LINE L1 5514 6149 -2 260 45 0 45 chr6 150979528 150979572 -38299982 + L1MA3 LINE L1 6261 6302 -3 840 278 14 24 chr6 150979584 150979872 -38299682 - MER20B DNA MER1_type -489 294 10 21 36 0 0 chr6 150980121 150980149 -38299405 + AT_rich Low_complexity Low_complexity 1 28 0 368 271 107 16 chr6 150981164 150981286 -38298268 - L2 LINE L2 -47 3225 3093 334 336 35 0 chr6 150982094 150982207 -38297347 + L2 LINE L2 3142 3258 -14 264 287 43 32 chr6 150983201 150983231 -38296323 + L2 LINE L2 3208 3236 -77 2239 114 45 31 chr6 150983231 150983589 -38295965 - THE1B LTR MaLR 0 364 2 264 287 43 32 chr6 150983589 150983652 -38295902 + L2 LINE L2 3236 3302 -11 225 0 0 0 chr6 150984030 150984055 -38295499 + (T)n Simple_repeat Simple_repeat 1 25 0 1355 141 8 8 chr6 150984564 150984805 -38294749 - L1MB1 LINE L1 0 6168 5928 416 345 26 26 chr6 150984952 150985146 -38294408 + MIR SINE MIR 21 214 -48 615 0 0 0 chr6 150985695 150985791 -38293763 + L1PA3 LINE L1 6070 6165 0 207 0 0 0 chr6 150987270 150987293 -38292261 + (A)n Simple_repeat Simple_repeat 1 23 0 207 283 10 20 chr6 150987799 150987898 -38291656 + T-rich Low_complexity Low_complexity 3 100 0 21 82 0 0 chr6 150988488 150988537 -38291017 + AT_rich Low_complexity Low_complexity 1 49 0 1315 76 28 19 chr6 150989044 150989255 -38290299 + L1MA2 LINE L1 6092 6304 0 24 32 0 0 chr6 150989276 150989307 -38290247 + AT_rich Low_complexity Low_complexity 1 31 0 842 218 12 18 chr6 150989644 150989814 -38289740 + FAM SINE Alu 1 169 -6 26883 35 5 0 chr6 150991504 150995732 -38283822 - L1PA4 LINE L1 0 6155 1905 519 165 52 10 chr6 150995783 150995880 -38283674 + AluJb SINE Alu 11 111 -201 30 0 0 0 chr6 150995886 150995916 -38283638 + AT_rich Low_complexity Low_complexity 1 30 0 586 226 12 18 chr6 150995924 150996088 -38283466 + MER96B DNA MER1_type? 10 172 -245 391 280 17 25 chr6 150996639 150996757 -38282797 + L2 LINE L2 1717 1833 -1481 3165 232 58 68 chr6 150996767 150998096 -38281458 - L1MC4 LINE L1 0 8042 6728 1114 286 119 25 chr6 150998132 150998569 -38280985 + L2 LINE L2 1924 2401 -913 1476 173 102 7 chr6 150999426 150999709 -38279845 + AluSg SINE Alu 1 310 0 277 325 91 24 chr6 151000072 151000281 -38279273 + MIR SINE MIR 13 235 -27 24 0 0 0 chr6 151000374 151000398 -38279156 + AT_rich Low_complexity Low_complexity 1 24 0 840 198 6 12 chr6 151000749 151000921 -38278633 + FRAM SINE Alu 1 40 0 313 216 0 18 chr6 151000922 151001033 -38278521 + GA-rich Low_complexity Low_complexity 2 110 0 616 205 72 72 chr6 151002578 151002841 -38276713 - LTR37A LTR ERV1 0 426 164 1447 144 11 11 chr6 151002845 151003116 -38276438 - L1 LINE L1 -1094 5052 4782 183 80 0 0 chr6 151003391 151003416 -38276138 + (TG)n Simple_repeat Simple_repeat 2 26 0 2371 144 13 49 chr6 151003981 151004221 -38275333 - Tigger2a DNA MER2_type -2274 434 215 1872 82 23 23 chr6 151004221 151004501 -38275053 + AluSg SINE Alu 27 306 0 2371 144 13 49 chr6 151004501 151004709 -38274845 - Tigger2a DNA MER2_type -2493 215 1 22 0 0 0 chr6 151004717 151004739 -38274815 + AT_rich Low_complexity Low_complexity 1 22 0 583 261 109 22 chr6 151004878 151005108 -38274446 - MIR SINE MIR 0 262 13 559 234 58 29 chr6 151005364 151005535 -38274019 - MIR SINE MIR -22 240 65 360 0 0 0 chr6 151008698 151008738 -38270816 + (TG)n Simple_repeat Simple_repeat 2 41 0 1678 178 11 0 chr6 151008743 151009012 -38270542 - AluJo SINE Alu -30 282 11 711 308 28 16 chr6 151009475 151009728 -38269826 - MIR SINE MIR -5 257 2 2198 116 10 0 chr6 151009834 151010137 -38269417 + AluSx SINE Alu 1 306 -6 201 382 78 25 chr6 151013037 151013356 -38266198 + L2 LINE L2 2579 2914 -400 245 283 231 23 chr6 151013364 151013537 -38266017 - L2 LINE L2 -1 3312 3104 187 277 181 0 chr6 151014336 151014419 -38265135 - L2 LINE L2 -7 3265 3168 687 226 124 37 chr6 151014442 151014659 -38264895 + Charlie2 DNA MER1_type 6 241 -2621 2457 116 16 5 chr6 151014704 151015075 -38264479 - THE1C LTR MaLR 0 375 1 9773 110 37 9 chr6 151015075 151016597 -38262957 - THE1C-int LTR MaLR 0 1580 17 2673 105 8 0 chr6 151016603 151016975 -38262579 - THE1C LTR MaLR 0 375 1 1450 222 48 42 chr6 151017028 151017618 -38261936 + Charlie2 DNA MER1_type 2230 2822 -40 1228 269 19 49 chr6 151018014 151018486 -38261068 - MLT1J LTR MaLR -53 458 1 1092 245 191 52 chr6 151018634 151018893 -38260661 + L2 LINE L2 2296 2517 -796 2710 129 29 2 chr6 151018893 151019310 -38260244 - MSTA LTR MaLR 0 428 1 1092 245 191 52 chr6 151019310 151019834 -38259720 + L2 LINE L2 2517 3216 -97 2137 112 72 26 chr6 151019834 151020182 -38259372 + THE1B LTR MaLR 1 364 0 1092 245 191 52 chr6 151020182 151020290 -38259264 + L2 LINE L2 3216 3308 -5 24 0 0 0 chr6 151020683 151020707 -38258847 + AT_rich Low_complexity Low_complexity 1 24 0 422 255 41 10 chr6 151020945 151021043 -38258511 + L2 LINE L2 3198 3298 -15 225 291 265 0 chr6 151021596 151021747 -38257807 + MIR SINE MIR 65 255 -7 226 240 13 53 chr6 151021963 151022038 -38257516 - L3 LINE CR1 -871 706 635 1580 149 14 10 chr6 151022812 151023101 -38256453 - L1MB3 LINE L1 0 6183 5894 2158 128 101 25 chr6 151023114 151023512 -38256042 - MSTC LTR MaLR 0 428 1 7525 31 9 0 chr6 151024172 151025365 -38254189 - L1PA3 LINE L1 0 6155 4959 5157 32 1 0 chr6 151025365 151026016 -38253538 + L1PA3 LINE L1 4317 4968 -1178 297 302 20 16 chr6 151027429 151027594 -38251960 + GA-rich Low_complexity Low_complexity 1 165 0 285 256 0 0 chr6 151027919 151027997 -38251557 - MER116 DNA Mariner 0 80 3 226 333 0 10 chr6 151028003 151028099 -38251455 - L1ME4a LINE L1 -70 6051 5957 437 283 44 113 chr6 151028305 151028739 -38250815 - L1ME4a LINE L1 -460 5661 5258 21 0 0 0 chr6 151028786 151028807 -38250747 + AT_rich Low_complexity Low_complexity 1 21 0 242 287 68 54 chr6 151029016 151029312 -38250242 - L1ME LINE L1 -312 5809 5510 381 253 57 14 chr6 151029375 151029542 -38250012 - L1ME LINE L1 -910 5449 5308 838 145 0 15 chr6 151029721 151029852 -38249702 + AluSq/x SINE Alu 6 134 -178 1303 254 97 20 chr6 151029855 151030603 -38248951 + L1ME3A LINE L1 5149 5951 -219 372 268 71 60 chr6 151030674 151030857 -38248697 + L1ME3A LINE L1 5969 6153 -17 311 308 75 58 chr6 151030898 151031138 -38248416 - L1ME LINE L1 -1158 4988 4745 1187 148 0 0 chr6 151031730 151031906 -38247648 + FRAM SINE Alu 1 176 0 342 325 0 0 chr6 151034902 151035028 -38244526 + L3b LINE CR1 1302 1427 -156 2188 113 7 0 chr6 151035327 151035627 -38243927 + AluSx SINE Alu 1 302 -10 2510 73 0 10 chr6 151035847 151036161 -38243393 + AluY SINE Alu 1 311 0 188 349 75 28 chr6 151036733 151036839 -38242715 + L2 LINE L2 3160 3270 -2 486 212 229 0 chr6 151036935 151037105 -38242449 - MER3 DNA MER1_type 0 209 1 787 149 59 177 chr6 151037816 151038018 -38241536 + MIR SINE MIR 8 168 -94 1687 147 7 48 chr6 151038018 151038310 -38241244 + AluJo SINE Alu 11 290 -22 787 149 59 177 chr6 151038310 151038395 -38241159 + MIR SINE MIR 168 261 -1 446 125 0 25 chr6 151038554 151038634 -38240920 - MADE1 DNA Mariner 0 80 3 1841 164 0 39 chr6 151038669 151038980 -38240574 + AluJo SINE Alu 1 299 -13 1902 141 0 30 chr6 151041817 151042114 -38237440 + AluJb SINE Alu 1 288 -24 216 0 0 0 chr6 151043549 151043573 -38235981 + (T)n Simple_repeat Simple_repeat 1 24 0 761 262 6 0 chr6 151043598 151043781 -38235773 - MIR SINE MIR 0 262 79 1168 93 71 11 chr6 151043920 151044102 -38235452 + AluSp SINE Alu 1 193 -120 44 35 0 0 chr6 151044856 151044914 -38234640 + AT_rich Low_complexity Low_complexity 1 58 0 34 0 0 0 chr6 151046798 151046832 -38232722 + AT_rich Low_complexity Low_complexity 1 34 0 2258 111 0 0 chr6 151047146 151047443 -38232111 + AluSc SINE Alu 1 297 -12 198 0 0 0 chr6 151047991 151048013 -38231541 + (A)n Simple_repeat Simple_repeat 1 22 0 307 224 0 0 chr6 151048863 151048921 -38230633 - L2 LINE L2 -8 3305 3248 258 303 121 71 chr6 151049091 151049174 -38230380 + MIR SINE MIR 49 126 -136 2189 104 3 14 chr6 151049174 151049471 -38230083 + AluSg SINE Alu 1 294 -16 258 303 121 71 chr6 151049471 151049585 -38229969 + MIR SINE MIR 126 256 -6 1049 172 122 115 chr6 151049920 151050216 -38229338 + AluJo SINE Alu 5 302 0 582 321 72 0 chr6 151050219 151050428 -38229126 + MIR SINE MIR 28 251 -11 1062 175 26 10 chr6 151050999 151051193 -38228361 + AluJo SINE Alu 89 285 -27 180 0 0 0 chr6 151051193 151051213 -38228341 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 868 239 25 0 chr6 151051787 151051984 -38227570 + MIR SINE MIR 45 246 -16 2116 134 0 0 chr6 151052081 151052379 -38227175 + AluSg SINE Alu 1 298 -12 2171 113 0 20 chr6 151053456 151053757 -38225797 - AluSx SINE Alu -17 295 1 1522 200 92 12 chr6 151054636 151055044 -38224510 - MLT1C LTR MaLR -1 466 17 212 169 46 15 chr6 151055068 151055133 -38224421 + (CTCA)n Simple_repeat Simple_repeat 4 70 0 453 36 0 0 chr6 151055157 151055212 -38224342 + (CA)n Simple_repeat Simple_repeat 2 56 0 357 121 0 0 chr6 151055238 151055296 -38224258 - L1MD2 LINE L1 -13 6346 6289 1762 155 32 32 chr6 151055344 151055654 -38223900 + AluJo SINE Alu 1 310 -2 695 199 18 104 chr6 151055654 151055875 -38223679 - L1MD2 LINE L1 -57 6302 6101 234 0 0 0 chr6 151056160 151056186 -38223368 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 326 336 124 50 chr6 151056186 151056484 -38223070 - L2 LINE L2 -4 3268 2949 485 325 170 48 chr6 151056640 151057961 -38221593 - L2 LINE L2 -1742 1572 91 22 80 0 0 chr6 151058758 151058808 -38220746 + AT_rich Low_complexity Low_complexity 1 50 0 191 218 0 11 chr6 151059197 151059284 -38220270 + G-rich Low_complexity Low_complexity 5 90 0 393 156 26 13 chr6 151060010 151060087 -38219467 - L1MB1 LINE L1 -12 6156 6079 1674 188 7 4 chr6 151060345 151060621 -38218933 + AluJo SINE Alu 1 277 -35 781 185 23 0 chr6 151060629 151060759 -38218795 + Tigger2 DNA MER2_type 2576 2708 -10 2450 108 73 6 chr6 151060855 151061196 -38218358 - THE1B LTR MaLR 0 364 1 211 337 189 26 chr6 151061277 151061657 -38217897 + L2 LINE L2 2826 3267 -5 29 47 0 0 chr6 151061843 151061886 -38217668 + AT_rich Low_complexity Low_complexity 1 43 0 868 127 0 96 chr6 151061886 151062043 -38217511 + FLAM_C SINE Alu 1 142 -1 2434 113 24 42 chr6 151062390 151062772 -38216782 - THE1C LTR MaLR 0 375 1 2187 113 0 22 chr6 151063414 151063732 -38215822 + AluSx SINE Alu 1 311 -1 326 271 64 72 chr6 151064070 151064244 -38215310 - MIR SINE MIR -62 146 1 301 268 0 0 chr6 151064443 151064514 -38215040 - MER81 DNA DNA -1 113 43 315 0 0 0 chr6 151066364 151066399 -38213155 + (CA)n Simple_repeat Simple_repeat 2 36 0 353 269 141 27 chr6 151066713 151066862 -38212692 - MIR SINE MIR -10 252 87 1079 173 36 27 chr6 151067593 151067818 -38211736 + AluJb SINE Alu 85 311 -1 1436 93 0 0 chr6 151067926 151068108 -38211446 + AluSg/x SINE Alu 122 303 -7 234 340 58 0 chr6 151068109 151068265 -38211289 + L1ME LINE L1 5756 5920 -201 565 122 12 0 chr6 151068336 151068418 -38211136 + AluJ/FRAM SINE Alu 218 300 -12 2211 118 0 0 chr6 151068652 151068949 -38210605 - AluSx SINE Alu -14 298 2 293 339 9 9 chr6 151069308 151069423 -38210131 + MIR SINE MIR 96 210 -52 450 0 0 0 chr6 151069717 151069767 -38209787 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 2113 81 0 4 chr6 151069979 151070239 -38209315 - AluSq SINE Alu -53 260 2 662 313 137 14 chr6 151070542 151070964 -38208590 - L3 LINE CR1 -128 1449 976 229 324 14 14 chr6 151071500 151071574 -38207980 - L2 LINE L2 -43 3270 3197 2790 102 11 5 chr6 151071613 151071986 -38207568 - THE1C LTR MaLR 0 375 1 1850 164 10 0 chr6 151072061 151072360 -38207194 + AluJo SINE Alu 1 302 -10 384 315 24 0 chr6 151072659 151072786 -38206768 - MIR3 SINE MIR -65 143 14 2318 154 3 0 chr6 151072877 151073020 -38206534 - L1PB1 LINE L1 0 6151 6009 3740 138 7 31 chr6 151073020 151073830 -38205724 - L1PA8 LINE L1 -156 6016 5265 1796 105 82 149 chr6 151074488 151074557 -38204997 - THE1B LTR MaLR 0 375 303 14760 101 3 2 chr6 151074557 151074930 -38204624 + L1PA8A LINE L1 3292 3663 -2468 189 0 0 0 chr6 151074930 151074951 -38204603 + (CA)n Simple_repeat Simple_repeat 2 22 0 14760 101 3 2 chr6 151074951 151075458 -38204096 + L1PA8A LINE L1 3663 4168 -1963 2114 109 3 7 chr6 151075458 151075752 -38203802 + AluSg1 SINE Alu 1 293 -16 14760 101 3 2 chr6 151075752 151076212 -38203342 + L1PA8A LINE L1 4168 4626 -1505 2333 92 3 9 chr6 151076212 151076527 -38203027 + AluSp SINE Alu 1 313 0 14760 101 3 2 chr6 151076527 151078006 -38201548 + L1PA8A LINE L1 4626 6118 -13 186 43 0 0 chr6 151078009 151078032 -38201522 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1796 105 82 149 chr6 151078032 151078300 -38201254 - THE1B LTR MaLR -74 301 57 216 351 0 0 chr6 151079120 151079177 -38200377 + MIR SINE MIR 12 68 -194 424 172 0 0 chr6 151079180 151079244 -38200310 + AluYb8 SINE Alu 135 198 -120 395 171 31 116 chr6 151079273 151079402 -38200152 + MIR SINE MIR 57 174 -88 428 207 20 11 chr6 151079655 151079756 -38199798 - MIR3 SINE MIR -9 199 98 276 225 36 9 chr6 151080382 151080531 -38199023 + LTR16A LTR ERVL 259 441 -9 2133 149 6 25 chr6 151080806 151081168 -38198386 + MLT1A1 LTR MaLR 5 359 -6 2118 139 0 0 chr6 151082278 151082579 -38196975 + AluJb SINE Alu 1 301 -11 1659 172 59 0 chr6 151082628 151082918 -38196636 + AluJo SINE Alu 4 310 -2 240 191 237 76 chr6 151082936 151083067 -38196487 - MLT1L LTR MaLR 0 615 464 197 294 39 0 chr6 151084069 151084120 -38195434 - L2 LINE L2 -34 3238 3186 213 39 0 0 chr6 151084206 151084232 -38195322 + (A)n Simple_repeat Simple_repeat 1 26 0 199 291 73 0 chr6 151084412 151084467 -38195087 + MIR SINE MIR 40 98 -110 2019 95 47 20 chr6 151084788 151085084 -38194470 - AluSx SINE Alu -8 304 1 27 29 0 0 chr6 151086037 151086071 -38193483 + AT_rich Low_complexity Low_complexity 1 34 0 2307 285 153 46 chr6 151086553 151086586 -38192968 - L2 LINE L2 -172 3141 3113 1736 130 92 24 chr6 151086586 151086878 -38192676 + AluJo SINE Alu 1 312 0 2307 285 153 46 chr6 151086878 151087435 -38192119 - L2 LINE L2 -200 3113 2617 1992 107 41 14 chr6 151087435 151087726 -38191828 - AluSx SINE Alu -13 299 1 2307 285 153 46 chr6 151087726 151088188 -38191366 - L2 LINE L2 -696 2617 2206 2377 92 0 0 chr6 151088188 151088482 -38191072 + AluSc SINE Alu 1 294 -15 2307 285 153 46 chr6 151088482 151089036 -38190518 - L2 LINE L2 -1107 2206 1342 464 181 51 87 chr6 151089387 151089525 -38190029 + HAL1 LINE L1 48 180 -2327 603 245 118 70 chr6 151089592 151090066 -38189488 + HAL1 LINE L1 586 1082 -1425 2196 110 0 19 chr6 151090066 151090374 -38189180 + AluSg SINE Alu 1 302 -8 289 229 71 14 chr6 151090374 151090444 -38189110 + HAL1 LINE L1 1635 1708 -799 1420 145 14 2 chr6 151090560 151090816 -38188738 + L1MC1 LINE L1 5580 5847 -486 570 106 12 0 chr6 151090777 151090862 -38188692 + L1MB1 LINE L1 5864 5949 -219 * 812 130 26 0 chr6 151090863 151090978 -38188576 + AluJb SINE Alu 1 118 -194 1197 138 62 0 chr6 151091005 151091215 -38188339 + L1MB1 LINE L1 5935 6157 -11 270 0 0 0 chr6 151091215 151091245 -38188309 + (CA)n Simple_repeat Simple_repeat 1 30 0 682 225 78 83 chr6 151091253 151091321 -38188233 + HAL1 LINE L1 2032 2099 -408 1791 147 0 4 chr6 151091321 151091587 -38187967 + AluJb SINE Alu 1 265 -47 682 225 78 83 chr6 151091587 151091913 -38187641 + HAL1 LINE L1 2099 2424 -83 183 100 0 0 chr6 151092222 151092252 -38187302 + (GGA)n Simple_repeat Simple_repeat 2 31 0 331 230 53 7 chr6 151092861 151093013 -38186541 + (TA)n Simple_repeat Simple_repeat 2 160 0 2661 30 0 0 chr6 151093346 151093644 -38185910 + AluY SINE Alu 1 298 -13 304 136 197 0 chr6 151093873 151093939 -38185615 + Tigger3(Golem) DNA MER2_type 2818 2896 -133 2174 112 10 13 chr6 151094333 151094645 -38184909 + AluSx SINE Alu 1 311 -1 489 186 52 0 chr6 151095799 151095896 -38183658 + Tigger3b DNA MER2_type 1 102 -1129 * 5655 109 50 14 chr6 151095894 151095961 -38183593 + Tigger3b DNA MER2_type 274 337 -2691 1769 140 16 42 chr6 151095961 151096268 -38183286 + AluJb SINE Alu 1 299 -13 5655 109 50 14 chr6 151096268 151097125 -38182429 + Tigger3b DNA MER2_type 337 1231 0 313 87 0 0 chr6 151098156 151098202 -38181352 - Tigger4(Zombi) DNA MER2_type -464 2267 2222 * 945 142 55 0 chr6 151098199 151098358 -38181196 - Tigger4(Zombi) DNA MER2_type -2683 48 -2 580 224 70 7 chr6 151098367 151098510 -38181044 - MER33 DNA MER1_type -172 152 1 1924 158 3 0 chr6 151098828 151099119 -38180435 - AluJb SINE Alu -20 292 1 498 299 125 58 chr6 151099455 151099604 -38179950 + L2 LINE L2 1338 1476 -1838 2107 122 3 3 chr6 151099604 151099900 -38179654 + AluSx SINE Alu 1 296 -16 498 299 125 58 chr6 151099900 151100319 -38179235 + L2 LINE L2 1476 1944 -1370 315 330 116 33 chr6 151100381 151100657 -38178897 + L2 LINE L2 2194 2492 -822 2506 101 22 0 chr6 151100827 151101183 -38178371 + THE1B LTR MaLR 1 364 0 1372 158 9 0 chr6 151102124 151102345 -38177209 + THE1B LTR MaLR 57 279 -85 199 229 125 42 chr6 151102346 151102442 -38177112 - MIR3 SINE MIR -53 155 52 382 322 85 0 chr6 151103596 151103714 -38175840 - L2 LINE L2 0 3272 3145 493 251 139 27 chr6 151103726 151103913 -38175641 + L2 LINE L2 3101 3308 -5 202 279 0 59 chr6 151104684 151104752 -38174802 - L3 LINE CR1 -207 1370 1307 300 75 0 0 chr6 151104884 151104924 -38174630 + Alu SINE Alu 1 40 -262 255 313 107 0 chr6 151105582 151105694 -38173860 - L2 LINE L2 -976 2338 2215 2234 92 7 0 chr6 151106126 151106418 -38173136 + AluSc SINE Alu 1 294 -15 2091 115 3 0 chr6 151108513 151108799 -38170755 - AluSx SINE Alu -19 293 7 23 0 0 0 chr6 151108888 151108911 -38170643 + AT_rich Low_complexity Low_complexity 1 23 0 1693 105 129 0 chr6 151108957 151109258 -38170296 + AluSg SINE Alu 1 333 0 358 20 39 0 chr6 151110929 151110980 -38168574 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 203 286 286 22 chr6 151115386 151115568 -38163986 + MIR SINE MIR 25 254 -8 827 211 25 0 chr6 151115586 151115747 -38163807 - MIR SINE MIR -21 241 77 21 36 0 0 chr6 151116055 151116083 -38163471 + AT_rich Low_complexity Low_complexity 1 28 0 476 296 121 22 chr6 151116522 151116745 -38162809 + MIR SINE MIR 18 262 0 2119 129 0 0 chr6 151116752 151117046 -38162508 - AluSg SINE Alu -16 294 1 207 108 27 0 chr6 151123507 151123544 -38156010 + A-rich Low_complexity Low_complexity 3 40 0 315 286 163 20 chr6 151123659 151123806 -38155748 - MIR SINE MIR -67 195 28 352 301 81 0 chr6 151125152 151125275 -38154279 - MIR SINE MIR -109 153 21 231 114 0 0 chr6 151126843 151126878 -38152676 + (A)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr6 151126942 151126963 -38152591 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 151127383 151127404 -38152150 + AT_rich Low_complexity Low_complexity 1 21 0 967 72 0 43 chr6 151130066 151130204 -38149350 - FRAM SINE Alu -15 161 30 21 0 0 0 chr6 151130204 151130225 -38149329 + AT_rich Low_complexity Low_complexity 1 21 0 384 22 0 0 chr6 151131537 151131582 -38147972 + (CA)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chr6 151131906 151131935 -38147619 + AT_rich Low_complexity Low_complexity 1 29 0 430 199 199 15 chr6 151132087 151132223 -38147331 + MIR SINE MIR 29 189 -73 24 0 0 0 chr6 151132277 151132301 -38147253 + AT_rich Low_complexity Low_complexity 1 24 0 488 239 110 0 chr6 151134620 151134783 -38144771 + MIR SINE MIR 65 245 -17 859 191 12 29 chr6 151135569 151135742 -38143812 + FAM SINE Alu 1 170 -5 186 43 0 0 chr6 151136632 151136655 -38142899 + (TA)n Simple_repeat Simple_repeat 2 24 0 233 106 0 0 chr6 151136659 151136706 -38142848 + LTR66 LTR ERVL 394 440 -170 204 233 70 0 chr6 151137075 151137118 -38142436 - L2 LINE L2 -15 3257 3212 387 300 179 55 chr6 151137228 151137789 -38141765 - L2 LINE L2 -25 3288 2651 183 272 0 158 chr6 151137811 151137925 -38141629 - L2 LINE L2 -794 2520 2425 184 162 0 27 chr6 151138007 151138044 -38141510 - MIR SINE MIR -154 54 19 2090 99 20 3 chr6 151138363 151138656 -38140898 + AluSx SINE Alu 1 298 -14 335 235 75 135 chr6 151138863 151139063 -38140491 + MIR SINE MIR 48 235 -27 2284 95 0 0 chr6 151139231 151139526 -38140028 + AluSx SINE Alu 1 295 -17 657 136 0 80 chr6 151139527 151139652 -38139902 + AluSg/x SINE Alu 133 247 -63 1202 161 0 18 chr6 151139652 151139875 -38139679 + AluSg/x SINE Alu 82 300 -10 1927 101 36 0 chr6 151140293 151140570 -38138984 + AluSx SINE Alu 1 287 -25 485 143 0 24 chr6 151140807 151140891 -38138663 - FRAM SINE Alu -24 152 71 186 118 29 0 chr6 151143605 151143639 -38135915 + L2 LINE L2 3237 3271 -1 24 0 0 0 chr6 151144243 151144267 -38135287 + AT_rich Low_complexity Low_complexity 1 24 0 2049 107 0 4 chr6 151144267 151144548 -38135006 - AluSx SINE Alu -31 281 2 206 352 9 0 chr6 151144659 151144671 -38134883 + GA-rich Low_complexity Low_complexity 2 12 -95 2173 133 0 0 chr6 151144671 151144979 -38134575 + AluSx SINE Alu 1 308 -4 206 352 9 0 chr6 151144979 151145071 -38134483 + GA-rich Low_complexity Low_complexity 12 107 0 375 176 55 33 chr6 151145431 151145522 -38134032 + LTR67 LTR ERVL 457 549 -8 47 19 0 0 chr6 151145720 151145774 -38133780 + AT_rich Low_complexity Low_complexity 1 54 0 1533 157 6 116 chr6 151145874 151146024 -38133530 + AluJb SINE Alu 2 96 -206 2338 86 0 13 chr6 151146024 151146328 -38133226 - AluSg1 SINE Alu -5 304 5 1533 157 6 116 chr6 151146328 151146514 -38133040 + AluJb SINE Alu 96 301 -1 3256 128 15 0 chr6 151147278 151147745 -38131809 + MER1A DNA MER1_type 56 529 0 280 351 13 26 chr6 151147925 151148076 -38131478 - L2 LINE L2 -1 3271 3123 186 43 0 0 chr6 151148125 151148148 -38131406 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 5119 97 7 22 chr6 151148150 151148683 -38130871 - L1PA13 LINE L1 -19 6144 5625 2298 100 30 0 chr6 151148683 151148984 -38130570 - AluSg SINE Alu 0 310 1 5119 97 7 22 chr6 151148984 151149210 -38130344 - L1PA13 LINE L1 -538 5625 5397 2385 66 26 7 chr6 151149211 151149514 -38130040 - AluSc SINE Alu 0 309 1 574 287 98 32 chr6 151149550 151149752 -38129802 - L2 LINE L2 -906 2408 2221 1825 161 0 0 chr6 151149752 151150032 -38129522 + AluJo SINE Alu 1 280 -32 225 65 0 0 chr6 151150032 151150063 -38129491 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 574 287 98 32 chr6 151150063 151150197 -38129357 - L2 LINE L2 -1092 2222 2049 700 194 90 0 chr6 151150213 151150357 -38129197 - MLT1F LTR MaLR 0 542 386 271 151 38 0 chr6 151150347 151150400 -38129154 + Alu SINE Alu 243 297 -3 * 236 214 110 64 chr6 151150409 151150582 -38128972 + L1ME4a LINE L1 5930 6110 -11 2343 96 0 0 chr6 151150672 151150965 -38128589 - AluSx SINE Alu -18 294 2 324 0 0 0 chr6 151150970 151151006 -38128548 + (TG)n Simple_repeat Simple_repeat 1 36 0 490 239 106 7 chr6 151151061 151151203 -38128351 + FRAM SINE Alu 4 159 -17 368 250 125 35 chr6 151152234 151152378 -38127176 - MLT1J2 LTR MaLR -22 428 272 207 0 0 0 chr6 151152448 151152471 -38127083 + (TTG)n Simple_repeat Simple_repeat 2 24 0 293 62 21 0 chr6 151152471 151152519 -38127035 - L1PB2 LINE L1 -4 6147 6099 423 145 0 16 chr6 151202519 151202581 -38076973 - AluS SINE Alu -256 62 2 2236 78 4 0 chr6 151206169 151206450 -38073104 + AluSp SINE Alu 18 299 -14 1761 186 159 11 chr6 151206704 151207075 -38072479 - MSTB LTR MaLR 0 426 1 1400 167 66 87 chr6 151207280 151207627 -38071927 - MLT2C1 LTR ERVL 0 397 58 2464 161 46 7 chr6 151208206 151208616 -38070938 + MSTB LTR MaLR 1 426 0 3238 44 16 5 chr6 151208906 151209289 -38070265 - L1PA5 LINE L1 0 6154 5768 21 0 0 0 chr6 151209328 151209349 -38070205 + AT_rich Low_complexity Low_complexity 1 21 0 2182 89 24 3 chr6 151210950 151211243 -38068311 - AluSp SINE Alu -14 299 1 1761 120 28 69 chr6 151211665 151211982 -38067572 + AluJb SINE Alu 1 304 -8 790 239 103 0 chr6 151212315 151212528 -38067026 - MIR SINE MIR -4 258 24 1827 168 3 3 chr6 151212858 151213150 -38066404 + AluJo SINE Alu 1 292 -20 628 269 23 6 chr6 151213899 151214074 -38065480 - MER5B DNA MER1_type 0 178 1 1975 135 0 23 chr6 151214938 151215241 -38064313 + AluSx SINE Alu 1 296 -16 2417 211 38 57 chr6 151216075 151216528 -38063026 + L1ME1 LINE L1 5451 5888 -278 2036 105 23 36 chr6 151216528 151216834 -38062720 + AluSp SINE Alu 1 302 -11 2417 211 38 57 chr6 151216834 151217044 -38062510 + L1ME1 LINE L1 5888 6101 -65 1891 160 0 0 chr6 151217093 151217381 -38062173 - AluSx SINE Alu -22 290 3 731 174 0 0 chr6 151217975 151218084 -38061470 + FLAM_A SINE Alu 1 109 -33 260 276 86 26 chr6 151218358 151218474 -38061080 + 7SK RNA RNA 5 127 -66 37 39 0 0 chr6 151218878 151218929 -38060625 + AT_rich Low_complexity Low_complexity 1 51 0 3181 75 11 47 chr6 151218929 151219180 -38060374 - L1MA1 LINE L1 0 6302 6074 2000 153 0 0 chr6 151219180 151219474 -38060080 - AluSx SINE Alu -18 294 1 3181 75 11 47 chr6 151219474 151219692 -38059862 - L1MA1 LINE L1 -228 6074 5850 186 103 0 0 chr6 151220978 151221007 -38058547 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 71 0 0 chr6 151223281 151223323 -38056231 + GC_rich Low_complexity Low_complexity 1 42 0 31 44 0 0 chr6 151223379 151223424 -38056130 + GC_rich Low_complexity Low_complexity 1 45 0 333 0 0 0 chr6 151225102 151225139 -38054415 + (A)n Simple_repeat Simple_repeat 1 37 0 543 273 10 51 chr6 151227264 151227331 -38052223 - MIR SINE MIR -3 259 191 2107 133 0 0 chr6 151227331 151227624 -38051930 - AluSx SINE Alu -19 293 1 543 273 10 51 chr6 151227624 151227750 -38051804 - MIR SINE MIR -71 191 75 303 262 38 126 chr6 151227885 151227971 -38051583 + MER5B DNA MER1_type 12 75 -103 1824 171 14 7 chr6 151227971 151228264 -38051290 + AluJo SINE Alu 1 295 -17 303 262 38 126 chr6 151228264 151228360 -38051194 + MER5B DNA MER1_type 75 178 0 1673 202 0 0 chr6 151228794 151229076 -38050478 + AluJb SINE Alu 1 282 -30 2056 138 10 0 chr6 151229380 151229678 -38049876 + AluSx SINE Alu 1 301 -11 1458 144 5 5 chr6 151229805 151230027 -38049527 - AluJb SINE Alu -4 308 87 2426 74 0 3 chr6 151231258 151231556 -38047998 + AluY SINE Alu 1 297 -14 263 321 146 30 chr6 151231767 151231932 -38047622 - MIR3 SINE MIR -5 203 20 2483 80 0 3 chr6 151232230 151232543 -38047011 + AluSx SINE Alu 1 312 0 649 212 45 0 chr6 151232858 151232990 -38046564 - FLAM_C SINE Alu -4 139 2 29 0 0 0 chr6 151233209 151233238 -38046316 + AT_rich Low_complexity Low_complexity 1 29 0 2015 147 7 0 chr6 151233360 151233660 -38045894 + AluSx SINE Alu 1 302 -10 1531 159 58 36 chr6 151233827 151234158 -38045396 + AluJo SINE Alu 1 337 0 391 207 162 9 chr6 151234551 151234662 -38044892 + L2 LINE L2 3144 3271 -1 1648 175 3 41 chr6 151235825 151236145 -38043409 - AluJo SINE Alu -4 308 1 328 298 24 0 chr6 151236212 151236296 -38043258 - MER5A DNA MER1_type -85 104 19 221 214 71 0 chr6 151236589 151236631 -38042923 + L2 LINE L2 3212 3256 -16 21 0 0 0 chr6 151236950 151236971 -38042583 + AT_rich Low_complexity Low_complexity 1 21 0 498 314 32 21 chr6 151237125 151237313 -38042241 + MIR SINE MIR 48 237 -25 2696 135 53 10 chr6 151237859 151238275 -38041279 + MER57B LTR ERV1 1 434 0 807 136 0 0 chr6 151238594 151238704 -38040850 - AluJb SINE Alu -13 299 190 2191 100 52 0 chr6 151241754 151242043 -38037511 + AluSg SINE Alu 1 304 -6 6379 97 20 29 chr6 151242055 151242966 -38036588 + MER4D LTR ERV1 1 903 0 265 314 152 33 chr6 151243332 151243718 -38035836 + L2 LINE L2 1861 2368 -946 1412 151 27 0 chr6 151243814 151244039 -38035515 - L1MB2 LINE L1 -15 6156 5926 766 188 11 192 chr6 151244044 151244330 -38035224 + LTR28 LTR ERV1 3 893 -841 631 232 47 47 chr6 151244339 151244558 -38034996 + MER52A LTR ERV1 340 1305 -12 2739 138 2 12 chr6 151244650 151245070 -38034484 - L1MB2 LINE L1 -252 5919 5504 2384 79 7 0 chr6 151245426 151245718 -38033836 - AluSp SINE Alu -19 294 1 3406 130 31 18 chr6 151246172 151246680 -38032874 + MLT2B2 LTR ERVL 1 515 0 2327 125 0 0 chr6 151247081 151247392 -38032162 - AluSx SINE Alu -1 311 1 2506 59 0 3 chr6 151247845 151248150 -38031404 - AluY SINE Alu -7 304 1 5052 196 37 31 chr6 151248169 151248323 -38031231 - L1MC4a LINE L1 0 7808 7656 1806 185 0 7 chr6 151248323 151248625 -38030929 - AluJb SINE Alu -12 300 1 5052 196 37 31 chr6 151248625 151249474 -38030080 - L1MC4a LINE L1 -152 7656 6796 1588 183 24 7 chr6 151249474 151249764 -38029790 - AluJo SINE Alu -13 299 5 5052 196 37 31 chr6 151249764 151249876 -38029678 - L1MC4a LINE L1 -1012 6796 6686 1928 190 33 0 chr6 151249909 151250241 -38029313 + MER7A DNA MER2_type 1 341 -5 1154 193 86 0 chr6 151250844 151251088 -38028466 - L1MD3 LINE L1 -8 7987 7723 182 333 41 65 chr6 151251508 151251631 -38027923 - L2 LINE L2 0 3272 3153 359 270 243 0 chr6 151251840 151251992 -38027562 + Charlie7 DNA MER1_type 73 261 -2351 31 0 0 0 chr6 151252016 151252047 -38027507 + AT_rich Low_complexity Low_complexity 1 31 0 933 125 0 22 chr6 151252050 151252186 -38027368 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr6 151252293 151252314 -38027240 + AT_rich Low_complexity Low_complexity 1 21 0 286 267 34 110 chr6 151252589 151252653 -38026901 - MER5B DNA MER1_type 0 178 130 1971 149 22 6 chr6 151252653 151252976 -38026578 + L1MC1 LINE L1 6006 6333 0 286 267 34 110 chr6 151252976 151253057 -38026497 - MER5B DNA MER1_type -48 130 44 846 187 0 0 chr6 151253985 151254140 -38025414 - AluJb SINE Alu -21 291 137 2194 146 8 6 chr6 151254140 151254503 -38025051 - L1MB3 LINE L1 -41 6142 5779 2186 112 0 3 chr6 151254961 151255257 -38024297 + AluSx SINE Alu 1 295 -17 480 111 0 0 chr6 151255399 151255471 -38024083 + (TG)n Simple_repeat Simple_repeat 2 73 0 871 129 0 0 chr6 151256990 151257114 -38022440 - FLAM_C SINE Alu -9 134 11 2631 105 8 30 chr6 151257480 151257852 -38021702 - THE1B LTR MaLR 0 364 1 1981 127 0 23 chr6 151258261 151258568 -38020986 - AluJo SINE Alu -1 311 12 1778 147 16 49 chr6 151258621 151258973 -38020581 - AluSx SINE Alu 0 312 1 3882 61 0 0 chr6 151259791 151260235 -38019319 + MLT2A1 LTR ERVL 1 444 0 456 296 130 0 chr6 151260573 151260742 -38018812 - MIR SINE MIR -70 192 2 187 229 86 0 chr6 151261325 151261395 -38018159 + L2 LINE L2 3078 3153 -160 824 276 26 18 chr6 151261411 151261639 -38017915 + MIR SINE MIR 12 241 -21 583 264 25 12 chr6 151261648 151261811 -38017743 + L2 LINE L2 3149 3313 0 1682 162 45 66 chr6 151262699 151263072 -38016482 + MLT1B LTR MaLR 1 370 -20 1453 189 148 39 chr6 151263072 151263484 -38016070 + MSTB2 LTR MaLR 1 457 0 1682 162 45 66 chr6 151263484 151263505 -38016049 + MLT1B LTR MaLR 370 390 0 3307 152 45 35 chr6 151263578 151263690 -38015864 + MER6A DNA MER2_type 1 110 -755 2595 65 0 0 chr6 151263690 151264000 -38015554 - AluY SINE Alu 0 311 2 3307 152 45 35 chr6 151264000 151264051 -38015503 + MER6A DNA MER2_type 110 159 -706 3112 77 0 0 chr6 151264051 151264415 -38015139 + THE1B LTR MaLR 1 364 0 3307 152 45 35 chr6 151264415 151264848 -38014706 + MER6A DNA MER2_type 159 604 -1 208 348 56 0 chr6 151264874 151264963 -38014591 + L2 LINE L2 3185 3278 -35 266 279 29 0 chr6 151266348 151266416 -38013138 + L3b LINE CR1 1511 1580 -3 729 232 134 13 chr6 151266503 151266727 -38012827 - MLT1J1 LTR MaLR -190 256 6 341 319 0 14 chr6 151266742 151266880 -38012674 + L1MC/D LINE L1 5342 5477 -2331 195 114 0 0 chr6 151267949 151267984 -38011570 + (TG)n Simple_repeat Simple_repeat 1 35 0 1957 126 46 3 chr6 151268282 151268567 -38010987 - AluSx SINE Alu -15 297 1 233 245 0 0 chr6 151268630 151268679 -38010875 - L2 LINE L2 0 3313 3265 * 1042 293 156 38 chr6 151268674 151268896 -38010658 - L2 LINE L2 -787 2527 2333 1853 132 50 0 chr6 151268896 151269176 -38010378 + AluSx SINE Alu 1 294 -18 1042 293 156 38 chr6 151269176 151269959 -38009595 - L2 LINE L2 -981 2333 1403 282 250 158 33 chr6 151270696 151270848 -38008706 - MER5A DNA MER1_type -1 188 18 222 325 17 77 chr6 151270819 151270936 -38008618 + L2 LINE L2 3159 3268 -4 * 770 229 80 0 chr6 151270986 151271161 -38008393 - MER3 DNA MER1_type 0 209 21 315 310 71 76 chr6 151271279 151271714 -38007840 + L2 LINE L2 2836 3268 -4 1872 120 65 0 chr6 151272055 151272330 -38007224 + AluSq SINE Alu 1 293 -20 252 0 0 0 chr6 151272637 151272665 -38006889 + (TC)n Simple_repeat Simple_repeat 1 28 0 242 310 0 20 chr6 151272798 151272898 -38006656 - MIR SINE MIR -36 226 129 1973 150 0 10 chr6 151273349 151273655 -38005899 - AluJb SINE Alu -9 303 1 1769 150 3 14 chr6 151275456 151275765 -38003789 - AluJb SINE Alu 0 306 1 385 364 103 5 chr6 151275798 151275993 -38003561 - MIR SINE MIR -29 233 20 766 239 9 59 chr6 151276257 151276338 -38003216 - MIR SINE MIR -27 235 152 2074 123 7 17 chr6 151276338 151276639 -38002915 - AluSq SINE Alu -15 298 1 766 239 9 59 chr6 151276639 151276779 -38002775 - MIR SINE MIR -110 152 25 2061 124 6 13 chr6 151277202 151277516 -38002038 + AluSx SINE Alu 1 312 0 198 0 0 0 chr6 151277573 151277595 -38001959 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 236 184 0 0 chr6 151278153 151278191 -38001363 - MIR SINE MIR -118 144 107 2469 76 0 0 chr6 151279232 151279536 -38000018 + AluSg SINE Alu 1 304 -6 1298 271 108 24 chr6 151280891 151281790 -37997764 - L2 LINE L2 0 3313 2334 747 283 24 10 chr6 151281791 151281996 -37997558 + MIR SINE MIR 52 259 -3 1952 146 3 10 chr6 151282672 151282981 -37996573 + AluSx SINE Alu 1 307 -5 655 180 0 0 chr6 151283001 151283112 -37996442 + FLAM_A SINE Alu 28 138 -4 229 229 93 61 chr6 151283112 151283237 -37996317 + MIR SINE MIR 46 182 -61 26 0 0 0 chr6 151283753 151283779 -37995775 + AT_rich Low_complexity Low_complexity 1 26 0 2212 119 10 6 chr6 151283988 151284325 -37995229 + AluJb SINE Alu 1 338 0 3810 161 41 45 chr6 151284749 151285476 -37994078 + LTR8A LTR ERV1 4 727 0 238 213 0 0 chr6 151285888 151285935 -37993619 - L2 LINE L2 0 3313 3267 2251 165 53 65 chr6 151286697 151287170 -37992384 + LTR24 LTR ERV1 1 467 0 726 198 136 0 chr6 151287636 151287798 -37991756 - MIR SINE MIR -31 231 48 1100 157 98 118 chr6 151287798 151288136 -37991418 + MER110A LTR ERV1 2 332 -136 1725 167 82 90 chr6 151288308 151288806 -37990748 - LTR54B LTR ERV1 -2 496 3 31 44 0 0 chr6 151289098 151289143 -37990411 + AT_rich Low_complexity Low_complexity 1 45 0 2274 108 0 7 chr6 151289462 151289768 -37989786 - AluSq SINE Alu -9 304 1 357 24 0 0 chr6 151289864 151289906 -37989648 + (ATG)n Simple_repeat Simple_repeat 2 43 0 1851 139 40 0 chr6 151289906 151290179 -37989375 - AluJb SINE Alu -28 284 1 483 265 170 0 chr6 151290643 151290790 -37988764 + MER5B DNA MER1_type 1 172 -6 2359 90 7 0 chr6 151290814 151291115 -37988439 + AluSx SINE Alu 1 303 -9 317 339 9 9 chr6 151292295 151292407 -37987147 - L2 LINE L2 -228 3085 2974 1219 250 41 102 chr6 151292438 151292577 -37986977 - L2 LINE L2 -459 2855 2709 1218 139 0 16 chr6 151292577 151292764 -37986790 - L1MC1 LINE L1 0 6333 6150 1219 250 41 102 chr6 151292764 151293149 -37986405 - L2 LINE L2 -605 2709 2302 2077 149 0 0 chr6 151293149 151293457 -37986097 + AluSx SINE Alu 1 308 -4 762 143 7 50 chr6 151293467 151293607 -37985947 + L1PA16 LINE L1 6033 6166 0 1219 250 41 102 chr6 151293607 151293709 -37985845 - L2 LINE L2 -1021 2293 2256 408 18 0 70 chr6 151294168 151294225 -37985329 + MADE1 DNA Mariner 2 54 -26 4694 180 80 27 chr6 151294226 151294967 -37984587 - L1MCa LINE L1 -5175 1251 425 2451 73 0 0 chr6 151294967 151295267 -37984287 + AluY SINE Alu 2 301 -10 4694 180 80 27 chr6 151295267 151295693 -37983861 - L1MCa LINE L1 -6001 425 23 2197 125 0 3 chr6 151297072 151297368 -37982186 + AluSx SINE Alu 1 295 -17 401 333 111 25 chr6 151297586 151298057 -37981497 + L1M4 LINE L1 2600 3124 -3022 472 241 84 0 chr6 151298067 151298233 -37981321 + L1MEd LINE L1 16 195 -5924 957 243 10 0 chr6 151298307 151298513 -37981041 - MER58A DNA MER1_type -15 209 2 750 284 153 26 chr6 151298518 151299046 -37980508 + L1MEd LINE L1 243 837 -5282 1739 169 38 41 chr6 151300637 151301003 -37978551 + MLT1A1 LTR MaLR 1 365 0 312 286 95 16 chr6 151301029 151301155 -37978399 + L2 LINE L2 3137 3272 0 1729 184 3 3 chr6 151301279 151301572 -37977982 - AluJo SINE Alu -18 294 2 613 157 122 17 chr6 151301574 151301689 -37977865 - FLAM_A SINE Alu -6 127 1 2350 79 0 0 chr6 151302625 151302915 -37976639 - AluY SINE Alu -21 290 1 236 33 0 0 chr6 151302925 151303003 -37976551 - AluSq SINE Alu 0 322 245 1559 120 5 0 chr6 151303003 151303212 -37976342 - AluSq SINE Alu -103 210 1 487 242 32 54 chr6 151303213 151303399 -37976155 + L2 LINE L2 3023 3204 -109 589 157 0 0 chr6 151303401 151303490 -37976064 + 5S rRNA rRNA 1 89 -32 361 274 9 28 chr6 151303491 151303597 -37975957 + L2 LINE L2 3196 3299 -14 1545 184 104 0 chr6 151304009 151304287 -37975267 + AluSg SINE Alu 1 307 -3 761 103 0 0 chr6 151304670 151304777 -37974777 - AluJb SINE Alu -8 304 198 293 50 0 0 chr6 151304841 151304881 -37974673 + MADE1 DNA Mariner 1 40 -40 2091 134 14 0 chr6 151305400 151305690 -37973864 + AluSx SINE Alu 1 294 -18 22 56 0 0 chr6 151306014 151306050 -37973504 + AT_rich Low_complexity Low_complexity 1 36 0 275 322 40 86 chr6 151306233 151306278 -37973276 - MIR3 SINE MIR -14 194 148 2188 121 3 0 chr6 151306278 151306576 -37972978 + AluSx SINE Alu 1 299 -13 198 71 0 0 chr6 151306576 151306604 -37972950 + (TA)n Simple_repeat Simple_repeat 2 29 0 275 322 40 86 chr6 151306604 151306731 -37972823 - MIR3 SINE MIR -58 150 29 2081 123 43 10 chr6 151307727 151308028 -37971526 - AluSx SINE Alu -1 311 1 1283 141 5 15 chr6 151308037 151308243 -37971311 - AluSq SINE Alu -4 309 106 1349 154 75 75 chr6 151308768 151309060 -37970494 + AluJo SINE Alu 1 292 -20 23 0 0 0 chr6 151309061 151309084 -37970470 + AT_rich Low_complexity Low_complexity 1 23 0 1814 184 37 6 chr6 151309246 151309600 -37969954 + MLT1A1 LTR MaLR 1 365 0 954 132 0 0 chr6 151309822 151309958 -37969596 + FLAM_C SINE Alu 1 136 -7 330 317 12 0 chr6 151311089 151311171 -37968383 - L2 LINE L2 0 3272 3190 313 331 69 29 chr6 151311511 151311686 -37967868 + MIR SINE MIR 7 188 -74 337 246 35 61 chr6 151312231 151312345 -37967209 - MER5B DNA MER1_type -66 112 2 23 33 0 0 chr6 151312547 151312577 -37966977 + AT_rich Low_complexity Low_complexity 1 30 0 472 337 47 84 chr6 151313349 151313366 -37966188 + L2 LINE L2 2909 2925 -347 843 236 77 5 chr6 151313366 151313574 -37965980 - MER58A DNA MER1_type 0 224 2 472 337 47 84 chr6 151313574 151313915 -37965639 + L2 LINE L2 2925 3254 -18 25 0 0 0 chr6 151314664 151314689 -37964865 + AT_rich Low_complexity Low_complexity 1 25 0 1965 131 3 0 chr6 151314868 151315257 -37964297 + AluSq SINE Alu 1 390 0 21 0 0 0 chr6 151317060 151317081 -37962473 + AT_rich Low_complexity Low_complexity 1 21 0 295 265 12 0 chr6 151317859 151317942 -37961612 + MLT1L LTR MaLR 133 216 -399 1734 148 0 15 chr6 151318131 151318394 -37961160 - AluJo SINE Alu -53 259 1 535 331 45 16 chr6 151320400 151320645 -37958909 - MIR SINE MIR -9 253 2 277 196 23 150 chr6 151322071 151322125 -37957429 - MER5A DNA MER1_type -70 119 90 2393 101 0 0 chr6 151322125 151322431 -37957123 - AluSx SINE Alu -6 306 1 277 196 23 150 chr6 151322431 151322509 -37957045 - MER5A DNA MER1_type -99 90 4 318 213 168 90 chr6 151322603 151322758 -37956796 + MER5B DNA MER1_type 2 168 -10 638 278 136 0 chr6 151322908 151323106 -37956448 - MIR SINE MIR -5 257 33 651 284 52 60 chr6 151323117 151323367 -37956187 + L2 LINE L2 3066 3313 0 301 289 95 56 chr6 151327409 151327595 -37951959 - L1MC/D LINE L1 -810 5336 5294 2182 138 3 0 chr6 151327595 151327907 -37951647 - AluSp SINE Alu 0 313 1 301 289 95 56 chr6 151327907 151328205 -37951349 - L1MC/D LINE L1 -852 5294 5009 270 0 0 0 chr6 151328869 151328899 -37950655 + (TG)n Simple_repeat Simple_repeat 2 31 0 2148 101 10 7 chr6 151329785 151330083 -37949471 - AluSx SINE Alu -13 299 1 453 225 54 8 chr6 151330083 151330212 -37949342 - MIR SINE MIR -52 210 76 2283 112 3 6 chr6 151331464 151331777 -37947777 - AluSx SINE Alu 0 312 1 1505 199 60 0 chr6 151332701 151333053 -37946501 + L1MB4 LINE L1 5807 6179 -1 768 175 0 8 chr6 151333432 151333558 -37945996 + FLAM_C SINE Alu 2 126 -7 318 252 41 0 chr6 151333614 151333737 -37945817 - L1MC/D LINE L1 -1375 4771 4644 735 222 90 81 chr6 151333851 151334283 -37945271 + LTR37B LTR ERV1 8 443 -25 310 82 33 0 chr6 151334278 151334339 -37945215 + LTR37A LTR ERV1 356 418 -8 * 1558 172 52 17 chr6 151334556 151334847 -37944707 - AluJb SINE Alu -11 301 1 816 157 22 0 chr6 151334868 151335002 -37944552 - AluJo SINE Alu -175 137 1 477 296 43 36 chr6 151335228 151335505 -37944049 - L1ME LINE L1 -420 5701 5423 555 153 0 0 chr6 151335655 151335753 -37943801 + CT-rich Low_complexity Low_complexity 1 98 0 415 303 96 11 chr6 151336212 151336390 -37943164 - MIR SINE MIR -14 248 56 349 214 173 90 chr6 151336451 151336768 -37942786 - L1MC4 LINE L1 -75 7967 7611 2258 109 7 10 chr6 151336768 151337072 -37942482 - AluSx SINE Alu -9 303 1 349 214 173 90 chr6 151337072 151337142 -37942412 - L1MC4 LINE L1 -431 7611 7548 3604 119 15 10 chr6 151337157 151337678 -37941876 + MER1A DNA MER1_type 4 527 0 432 260 66 122 chr6 151337781 151337836 -37941718 - L1MC4 LINE L1 -552 7490 7433 1793 132 90 17 chr6 151337836 151338124 -37941430 + AluSx SINE Alu 1 309 -3 432 260 66 122 chr6 151338124 151338387 -37941167 - L1MC4 LINE L1 -609 7433 7190 2211 114 3 0 chr6 151338510 151338807 -37940747 - AluSq SINE Alu -15 298 1 24 85 0 0 chr6 151339743 151339802 -37939752 + AT_rich Low_complexity Low_complexity 1 59 0 843 226 0 0 chr6 151340600 151340768 -37938786 + AluJb SINE Alu 137 304 -8 1345 171 23 9 chr6 151340806 151341022 -37938532 + AluJb SINE Alu 79 297 -15 1627 182 21 24 chr6 151341262 151341553 -37938001 + AluJo SINE Alu 1 290 -22 324 0 0 0 chr6 151343046 151343082 -37936472 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 82 0 0 chr6 151343822 151343871 -37935683 + AT_rich Low_complexity Low_complexity 1 49 0 181 257 0 0 chr6 151344394 151344429 -37935125 - L2 LINE L2 -10 3262 3228 316 329 111 57 chr6 151344690 151344771 -37934783 + L1ME4a LINE L1 5512 5587 -534 2069 117 0 38 chr6 151344771 151345087 -37934467 - AluSp SINE Alu -9 304 1 316 329 111 57 chr6 151345087 151345339 -37934215 + L1ME4a LINE L1 5587 5863 -258 2010 141 40 0 chr6 151345881 151346179 -37933375 + AluSx SINE Alu 1 310 -2 1172 273 120 43 chr6 151346496 151347891 -37931663 + L1M4b LINE L1 1369 3107 -3850 1374 144 0 17 chr6 151347891 151348127 -37931427 + MER46A DNA MER2_type 1 232 -4 1172 273 120 43 chr6 151348127 151348536 -37931018 + L1M4b LINE L1 3107 3483 -3474 1047 251 116 49 chr6 151348541 151349255 -37930299 + L1M4b LINE L1 3534 4295 -2662 449 327 0 32 chr6 151349267 151349423 -37930131 + L2 LINE L2 3162 3312 -1 2456 100 0 0 chr6 151349941 151350251 -37929303 - AluSg SINE Alu 0 310 1 2479 79 0 0 chr6 151350294 151350597 -37928957 - AluY SINE Alu -7 304 2 514 237 135 60 chr6 151350646 151350861 -37928693 - MLT1I LTR MaLR -26 383 153 302 342 156 10 chr6 151351038 151351237 -37928317 - MIR SINE MIR -15 247 20 2280 111 0 0 chr6 151351889 151352187 -37927367 - AluSx SINE Alu -14 298 1 892 306 43 18 chr6 151352876 151352945 -37926609 - L1ME4a LINE L1 -224 5897 5831 2645 160 23 40 chr6 151352945 151353212 -37926342 + L1MB3 LINE L1 5627 5897 -286 198 0 0 0 chr6 151353212 151353234 -37926320 + (CA)n Simple_repeat Simple_repeat 1 22 0 2645 160 23 40 chr6 151353234 151353521 -37926033 + L1MB3 LINE L1 5897 6172 -11 892 306 43 18 chr6 151353521 151353896 -37925658 - L1ME4a LINE L1 -290 5831 5442 1680 192 7 3 chr6 151354513 151354810 -37924744 + AluJb SINE Alu 1 298 -14 2320 65 0 11 chr6 151354814 151355092 -37924462 + AluY SINE Alu 19 293 -18 193 200 0 22 chr6 151356284 151356329 -37923225 - MIR SINE MIR -47 215 172 241 273 0 0 chr6 151356346 151356401 -37923153 + MLT1L LTR MaLR 143 197 -418 846 197 7 0 chr6 151357111 151357258 -37922296 + AluJo SINE Alu 1 148 -164 1351 192 91 11 chr6 151357264 151357639 -37921915 + L1MA3 LINE L1 2755 3159 -2987 851 155 0 0 chr6 151357639 151357781 -37921773 + FLAM_C SINE Alu 1 142 -1 9702 155 25 34 chr6 151357821 151359747 -37919807 + L1MA3 LINE L1 3164 5049 -1256 2136 81 0 0 chr6 151359747 151360008 -37919546 + AluY SINE Alu 49 309 -2 9702 155 25 34 chr6 151360008 151361250 -37918304 + L1MA3 LINE L1 5049 6300 -5 465 135 0 83 chr6 151361256 151361352 -37918202 + L1MC4 LINE L1 7942 8029 -13 2303 104 13 24 chr6 151361379 151361655 -37917899 + L1P4 LINE L1 5409 5681 -484 2338 87 0 7 chr6 151361655 151361953 -37917601 + AluSx SINE Alu 1 296 -16 2303 104 13 24 chr6 151361953 151362050 -37917504 + L1P4 LINE L1 5681 5778 -387 194 277 69 30 chr6 151362091 151362192 -37917362 - L2 LINE L2 -1023 2291 2187 2274 105 45 3 chr6 151362488 151362841 -37916713 + L1PA15 LINE L1 5769 6136 -29 31 44 0 0 chr6 151362841 151362886 -37916668 + AT_rich Low_complexity Low_complexity 1 45 0 1636 171 28 11 chr6 151364044 151364330 -37915224 - AluJo SINE Alu -19 293 3 2843 7 0 0 chr6 151364894 151365200 -37914354 - AluYa5 SINE Alu -5 306 1 228 238 50 0 chr6 151366305 151366385 -37913169 + L1ME4a LINE L1 5347 5430 -691 355 268 199 24 chr6 151366548 151366767 -37912787 + L1ME4a LINE L1 5830 6098 -23 1648 172 34 27 chr6 151366767 151367064 -37912490 + AluJo SINE Alu 1 299 -13 355 268 199 24 chr6 151367064 151367090 -37912464 + L1ME4a LINE L1 6098 6118 -3 2430 84 0 0 chr6 151367783 151368081 -37911473 - AluSc SINE Alu -11 298 1 545 193 128 9 chr6 151368282 151368391 -37911163 - FLAM_A SINE Alu -11 122 1 2209 121 7 3 chr6 151368861 151369167 -37910387 - AluSx SINE Alu -5 307 1 22 35 0 0 chr6 151370497 151370526 -37909028 + AT_rich Low_complexity Low_complexity 1 29 0 329 184 53 0 chr6 151370575 151370651 -37908903 - MER116 DNA Mariner 0 80 1 657 110 0 59 chr6 151371431 151371549 -37908005 - MER1B DNA MER1_type -55 284 174 27 49 0 0 chr6 151372245 151372286 -37907268 + AT_rich Low_complexity Low_complexity 1 41 0 681 209 34 34 chr6 151372432 151372449 -37907105 - AluJb SINE Alu 0 312 296 2461 77 6 0 chr6 151372449 151372760 -37906794 - AluSp SINE Alu 0 313 1 681 209 34 34 chr6 151372760 151372919 -37906635 - AluJb SINE Alu -15 297 136 201 257 54 27 chr6 151373242 151373316 -37906238 + MIR SINE MIR 100 175 -87 635 106 19 0 chr6 151373837 151373941 -37905613 + L1MB3 LINE L1 6078 6183 0 360 43 0 0 chr6 151374792 151374838 -37904716 + (CA)n Simple_repeat Simple_repeat 2 47 0 792 142 52 0 chr6 151374838 151374972 -37904582 - MER46A DNA MER2_type -95 141 1 2077 123 0 43 chr6 151375996 151376320 -37903234 + AluSx SINE Alu 1 310 -2 726 187 57 65 chr6 151376565 151376827 -37902727 + MER4A LTR ERV1 87 346 -318 2235 72 4 4 chr6 151376883 151377162 -37902392 + AluSg SINE Alu 28 306 -4 458 109 244 34 chr6 151377252 151377371 -37902183 + MER4C LTR ERV1 300 443 -22 216 0 0 0 chr6 151378088 151378112 -37901442 + (TG)n Simple_repeat Simple_repeat 1 24 0 2013 123 0 45 chr6 151378249 151378558 -37900996 - AluSx SINE Alu -17 295 1 386 272 69 52 chr6 151378719 151378892 -37900662 - MIR SINE MIR -80 182 7 334 245 61 0 chr6 151378923 151379021 -37900533 - MER58C DNA MER1_type 0 215 112 1812 176 10 0 chr6 151379055 151379357 -37900197 + AluJo SINE Alu 1 305 -7 846 250 58 9 chr6 151379366 151379590 -37899964 + MIR SINE MIR 28 262 0 274 240 141 33 chr6 151380677 151380798 -37898756 + MIR SINE MIR 33 166 -96 267 277 154 56 chr6 151383021 151383378 -37896176 + L1MC/D LINE L1 5417 5808 -2000 1961 128 16 16 chr6 151383678 151383982 -37895572 - AluSx SINE Alu -8 304 1 25 53 0 18 chr6 151383990 151384032 -37895522 + AT_rich Low_complexity Low_complexity 1 43 -13 2048 129 3 0 chr6 151384032 151384318 -37895236 - AluSx SINE Alu -25 287 1 25 53 0 18 chr6 151384318 151384332 -37895222 + AT_rich Low_complexity Low_complexity 43 56 0 243 0 0 0 chr6 151384590 151384617 -37894937 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 324 0 0 0 chr6 151384616 151384652 -37894902 + (TA)n Simple_repeat Simple_repeat 1 36 0 993 140 145 0 chr6 151384917 151385124 -37894430 + L1PA13 LINE L1 5925 6161 -2 2524 126 33 19 chr6 151386052 151386480 -37893074 + MER57B LTR ERV1 1 434 0 198 71 0 0 chr6 151386814 151386842 -37892712 + (A)n Simple_repeat Simple_repeat 1 28 0 605 321 63 25 chr6 151387001 151387238 -37892316 - MIR SINE MIR -12 250 5 1885 160 3 3 chr6 151387382 151387688 -37891866 + AluJb SINE Alu 1 306 -6 812 170 0 22 chr6 151388754 151388889 -37890665 - AluJo SINE Alu -178 134 3 1724 184 13 3 chr6 151388895 151389194 -37890360 - AluJb SINE Alu -10 302 1 2006 114 0 4 chr6 151389259 151389530 -37890024 + AluSx SINE Alu 2 271 -41 1384 165 135 16 chr6 151389921 151390224 -37889330 + MER44D DNA MER2_type 1 609 0 5050 118 15 6 chr6 151391838 151392166 -37887388 - Tigger1 DNA MER2_type -1 2417 2093 1603 198 44 0 chr6 151392166 151392337 -37887217 - AluJb SINE Alu -6 306 115 225 0 0 0 chr6 151392337 151392362 -37887192 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1603 198 44 0 chr6 151392362 151392483 -37887071 - AluJb SINE Alu -197 115 1 5050 118 15 6 chr6 151392483 151392960 -37886594 - Tigger1 DNA MER2_type -325 2093 1605 2540 143 52 11 chr6 151392964 151393403 -37886151 + LTR32 LTR ERVL 15 471 0 9474 117 26 29 chr6 151393403 151393641 -37885913 - Tigger1 DNA MER2_type -813 1605 1368 2323 97 16 3 chr6 151393641 151393949 -37885605 + AluSx SINE Alu 1 312 0 9474 117 26 29 chr6 151393949 151395300 -37884254 - Tigger1 DNA MER2_type -1050 1368 21 544 235 70 113 chr6 151395305 151395503 -37884051 - L2 LINE L2 -40 3232 3050 2003 143 14 3 chr6 151395503 151395796 -37883758 - AluJb SINE Alu -16 296 1 544 235 70 113 chr6 151395796 151395899 -37883655 - L2 LINE L2 -222 3050 2944 271 287 87 13 chr6 151396824 151396974 -37882580 - MIR SINE MIR -1 261 101 29 28 0 0 chr6 151398513 151398549 -37881005 + AT_rich Low_complexity Low_complexity 1 36 0 1722 173 13 17 chr6 151399255 151399555 -37879999 + AluJo SINE Alu 1 299 -13 195 356 104 18 chr6 151399977 151400255 -37879299 - L2 LINE L2 -158 3114 2813 521 285 130 51 chr6 151400306 151400622 -37878932 - MER102b DNA MER1_type 0 341 1 381 318 18 32 chr6 151400759 151400979 -37878575 - MARNA DNA Mariner -231 355 139 217 315 142 39 chr6 151401266 151401393 -37878161 + L2 LINE L2 3121 3260 -12 1884 154 6 28 chr6 151402088 151402407 -37877147 + AluJo SINE Alu 1 312 0 612 163 366 0 chr6 151402694 151402847 -37876707 - MER3 DNA MER1_type 0 209 1 2180 91 0 18 chr6 151403297 151403605 -37875949 + AluSg SINE Alu 1 303 0 25 51 0 0 chr6 151405317 151405356 -37874198 + AT_rich Low_complexity Low_complexity 1 39 0 225 154 0 0 chr6 151405600 151405639 -37873915 + (CA)n Simple_repeat Simple_repeat 1 39 0 439 230 184 13 chr6 151406857 151407009 -37872545 + MIR SINE MIR 85 262 0 415 328 63 6 chr6 151407337 151407511 -37872043 - MIR3 SINE MIR -5 203 20 1844 106 19 19 chr6 151408473 151408737 -37870817 - AluSx SINE Alu -27 285 22 1086 120 7 0 chr6 151408767 151408937 -37870617 - AluSp SINE Alu 0 304 134 2309 105 0 6 chr6 151408937 151409252 -37870302 - AluSp SINE Alu 0 313 1 589 310 38 75 chr6 151409252 151409535 -37870019 - L1 LINE L1 -1214 4932 4640 2298 102 0 10 chr6 151409535 151409848 -37869706 - AluSx SINE Alu -2 310 1 589 310 38 75 chr6 151409848 151410321 -37869233 - L1M4 LINE L1 -1506 4640 4204 812 247 186 3 chr6 151410329 151410620 -37868934 + L1M4 LINE L1 4615 4958 -1188 959 220 33 70 chr6 151410699 151410999 -37868555 + MER46C DNA MER2_type 2 290 -48 283 186 71 14 chr6 151411011 151411081 -37868473 + MIR SINE MIR 181 254 -8 1930 102 64 0 chr6 151411090 151411392 -37868162 + AluSg SINE Alu 1 319 0 201 237 0 0 chr6 151411401 151411460 -37868094 + (CTA)n Simple_repeat Simple_repeat 1 59 0 201 256 0 39 chr6 151411807 151411885 -37867669 + GA-rich Low_complexity Low_complexity 1 75 0 870 269 131 62 chr6 151412260 151412827 -37866727 + L1M4 LINE L1 3615 4252 -1894 1536 165 0 94 chr6 151412827 151413136 -37866418 + AluJo SINE Alu 1 280 -32 870 269 131 62 chr6 151413136 151413352 -37866202 + L1M4 LINE L1 4252 4452 -1694 506 116 47 35 chr6 151413358 151413444 -37866110 - FRAM SINE Alu -13 163 77 298 227 67 0 chr6 151413447 151413522 -37866032 + L1ME3A LINE L1 5808 5887 -283 2203 105 0 7 chr6 151413841 151414137 -37865417 + AluSx SINE Alu 1 294 -18 2091 192 0 24 chr6 151414576 151414956 -37864598 + MLT1A2 LTR MaLR 4 374 0 279 0 0 0 chr6 151415068 151415099 -37864455 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2248 90 0 0 chr6 151415101 151415380 -37864174 - AluSg SINE Alu -30 280 2 879 171 171 0 chr6 151415892 151416067 -37863487 + AluJo SINE Alu 90 294 -18 372 262 10 0 chr6 151416213 151416316 -37863238 + L1ME3A LINE L1 3930 4033 -2113 547 91 26 13 chr6 151416316 151416393 -37863161 - AluY SINE Alu -18 293 216 222 91 0 0 chr6 151416826 151416859 -37862695 + (TG)n Simple_repeat Simple_repeat 2 34 0 1816 167 0 23 chr6 151416912 151417212 -37862342 + AluJo SINE Alu 1 293 -19 2134 98 0 11 chr6 151417420 151417736 -37861818 - AluSq SINE Alu 0 313 1 1608 214 0 16 chr6 151417889 151418198 -37861356 + AluJo SINE Alu 1 304 -8 1320 232 100 69 chr6 151418235 151418584 -37860970 + L1ME3A LINE L1 5283 5620 -550 1488 175 45 8 chr6 151418584 151418852 -37860702 + AluJo SINE Alu 5 282 -30 1320 232 100 69 chr6 151418852 151418980 -37860574 + L1ME3A LINE L1 5620 5743 -427 1708 145 0 0 chr6 151418980 151419228 -37860326 - AluJb SINE Alu -14 298 51 1320 232 100 69 chr6 151419228 151419368 -37860186 + L1ME3A LINE L1 5743 5925 -245 2372 93 3 0 chr6 151419451 151419751 -37859803 + AluSp SINE Alu 1 301 -12 1030 204 0 0 chr6 151420026 151420198 -37859356 + FAM SINE Alu 1 172 -3 415 268 145 0 chr6 151420372 151420510 -37859044 - MIR SINE MIR 0 262 105 1514 168 3 115 chr6 151421133 151421473 -37858081 + AluJo SINE Alu 1 302 0 291 276 0 13 chr6 151421477 151421553 -37858001 + GA-rich Low_complexity Low_complexity 2 76 0 743 113 0 230 chr6 151421763 151421976 -37857578 + AluJb SINE Alu 141 304 -8 336 48 0 0 chr6 151422614 151422656 -37856898 + (TTAA)n Simple_repeat Simple_repeat 1 42 0 1295 129 68 68 chr6 151422656 151422904 -37856650 - AluJb SINE Alu -26 286 39 350 220 178 23 chr6 151423963 151424151 -37855403 + MIR SINE MIR 43 262 0 433 286 0 0 chr6 151425061 151425173 -37854381 + MER94 DNA DNA 19 130 -4 1308 138 230 4 chr6 151425447 151425686 -37853868 + AluJo SINE Alu 1 293 -9 201 277 31 92 chr6 151425832 151425962 -37853592 + MIR3 SINE MIR 1 122 -86 4849 206 74 76 chr6 151426211 151426441 -37853113 - L1MC4 LINE L1 0 8042 7813 544 33 0 0 chr6 151426441 151426502 -37853052 + L1PA8 LINE L1 6099 6159 -13 2236 76 7 7 chr6 151426505 151426817 -37852737 + AluSp SINE Alu 1 313 0 4849 206 74 76 chr6 151426817 151428167 -37851387 - L1MC4 LINE L1 -231 7811 6461 392 270 242 5 chr6 151428295 151428506 -37851048 + MIR SINE MIR 1 261 -1 2060 118 37 0 chr6 151428845 151429141 -37850413 - AluSc SINE Alu -2 307 1 890 161 14 0 chr6 151429247 151429390 -37850164 + FRAM SINE Alu 6 150 -26 1615 181 4 7 chr6 151429414 151429691 -37849863 + AluJb SINE Alu 1 276 -36 904 40 34 28 chr6 151430045 151430221 -37849333 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 723 189 0 0 chr6 151430242 151430353 -37849201 - FLAM_C SINE Alu -30 113 3 1731 112 0 13 chr6 151430360 151430625 -37848929 - AluSx SINE Alu 0 314 53 237 364 30 0 chr6 151431264 151431363 -37848191 + LTR67 LTR ERVL 100 201 -356 293 307 52 103 chr6 151431886 151432176 -37847378 - L2 LINE L2 0 3272 2998 367 307 66 0 chr6 151432184 151432321 -37847233 - MIR SINE MIR -5 257 112 241 289 147 39 chr6 151432332 151432637 -37846917 - L2 LINE L2 -301 2971 2617 1478 197 80 53 chr6 151432638 151432746 -37846808 - MLT1C LTR MaLR -4 463 359 4354 113 57 83 chr6 151432746 151433552 -37846002 + LTR1 LTR ERV1 1 785 0 1478 197 80 53 chr6 151433552 151433894 -37845660 - MLT1C LTR MaLR -108 359 1 217 349 9 18 chr6 151433897 151434006 -37845548 - L2 LINE L2 -705 2609 2502 752 301 146 12 chr6 151435980 151436322 -37843232 - LTR16C LTR ERVL -3 488 101 1913 153 0 3 chr6 151436675 151436978 -37842576 - AluSx SINE Alu 0 302 1 2325 85 7 3 chr6 151437570 151437864 -37841690 - AluSq SINE Alu -18 295 1 2185 78 11 3 chr6 151437958 151438260 -37841294 + AluSg SINE Alu 1 304 0 310 338 75 12 chr6 151438262 151438422 -37841132 - MIR SINE MIR -87 175 6 1748 191 3 0 chr6 151438546 151438849 -37840705 - AluJo SINE Alu -8 304 1 1216 104 0 6 chr6 151438906 151439063 -37840491 - AluSg/x SINE Alu -22 290 134 2101 78 15 0 chr6 151439063 151439333 -37840221 - AluSp SINE Alu -1 312 39 701 149 7 108 chr6 151439712 151439860 -37839694 - FLAM_C SINE Alu 0 133 1 338 270 213 44 chr6 151443809 151444124 -37835430 + L3 LINE CR1 1209 1576 -1 1791 171 7 3 chr6 151444699 151444998 -37834556 + AluJo SINE Alu 1 300 -12 335 384 20 34 chr6 151445165 151445311 -37834243 - MIR3 SINE MIR -61 147 4 1875 164 3 0 chr6 151445826 151446124 -37833430 - AluSx SINE Alu -13 299 1 26 74 0 0 chr6 151447743 151447797 -37831757 + AT_rich Low_complexity Low_complexity 1 54 0 1883 161 7 0 chr6 151447803 151448089 -37831465 - AluJb SINE Alu -23 289 2 1770 159 3 41 chr6 151448982 151449302 -37830252 + AluJo SINE Alu 1 308 -4 185 273 121 53 chr6 151449683 151449815 -37829739 + L3 LINE CR1 966 1106 -471 247 370 94 21 chr6 151449866 151450058 -37829496 - MIR SINE MIR -55 207 2 879 195 206 30 chr6 151450126 151450609 -37828945 + LTR41 LTR ERVL 1 651 -122 1856 149 17 3 chr6 151450609 151450904 -37828650 - AluJb SINE Alu -13 299 1 879 195 206 30 chr6 151450904 151450928 -37828626 + LTR41 LTR ERVL 651 669 -104 2048 142 3 0 chr6 151451975 151452271 -37827283 - AluJb SINE Alu -15 297 1 358 101 20 30 chr6 151452525 151452624 -37826930 + (TA)n Simple_repeat Simple_repeat 1 98 0 23 105 0 0 chr6 151452631 151452717 -37826837 + AT_rich Low_complexity Low_complexity 1 86 0 247 75 0 38 chr6 151452770 151452823 -37826731 + (TA)n Simple_repeat Simple_repeat 1 51 0 320 261 33 0 chr6 151452827 151452919 -37826635 + L1MC4 LINE L1 6614 6708 -1334 654 139 8 2 chr6 151453360 151453615 -37825939 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr6 151453881 151453903 -37825651 + AT_rich Low_complexity Low_complexity 1 22 0 246 172 69 0 chr6 151453960 151454018 -37825536 + (CATTA)n Simple_repeat Simple_repeat 1 62 0 1671 174 17 10 chr6 151454585 151454883 -37824671 - AluJb SINE Alu -12 300 1 835 192 93 31 chr6 151455278 151455471 -37824083 + MIR SINE MIR 36 240 -22 1829 146 35 28 chr6 151455923 151456211 -37823343 - AluJb SINE Alu -22 290 1 377 261 43 14 chr6 151457296 151457434 -37822120 + L2 LINE L2 3129 3270 -2 495 113 0 0 chr6 151457641 151457721 -37821833 + L1MA5A LINE L1 6215 6294 -3 240 200 0 0 chr6 151457936 151457991 -37821563 + (TA)n Simple_repeat Simple_repeat 1 55 0 1920 124 31 7 chr6 151458572 151458862 -37820692 - AluSx SINE Alu -14 298 2 353 269 113 63 chr6 151460269 151460507 -37819047 + L1ME4a LINE L1 5800 6049 -72 856 156 0 22 chr6 151460557 151460692 -37818862 + FLAM_C SINE Alu 1 132 -1 399 211 0 0 chr6 151461024 151461119 -37818435 + (CTGGGG)n Simple_repeat Simple_repeat 6 100 0 233 132 0 0 chr6 151462234 151462272 -37817282 + MER53 DNA DNA 151 188 -1 256 382 0 0 chr6 151462280 151462382 -37817172 - MER5A DNA MER1_type -29 160 59 1671 224 124 22 chr6 151462925 151463417 -37816137 + MLT1F1 LTR MaLR 26 567 0 25 0 0 0 chr6 151465217 151465242 -37814312 + AT_rich Low_complexity Low_complexity 1 25 0 310 164 233 0 chr6 151466927 151467000 -37812554 + MER3 DNA MER1_type 1 90 -119 253 118 0 88 chr6 151466975 151467043 -37812511 - MER3 DNA MER1_type -18 191 130 * 4502 198 32 21 chr6 151467044 151467430 -37812124 + L1MB2 LINE L1 4363 4743 -1428 1003 172 88 9 chr6 151467430 151467645 -37811909 - MER46A DNA MER2_type 0 236 5 4502 198 32 21 chr6 151467645 151467710 -37811844 + L1MB2 LINE L1 4743 4806 -1365 1962 151 10 0 chr6 151467710 151468001 -37811553 + AluSx SINE Alu 1 294 -18 4502 198 32 21 chr6 151468001 151469329 -37810225 + L1MB2 LINE L1 4806 6155 -16 309 235 94 0 chr6 151469359 151469444 -37810110 - MER3 DNA MER1_type -69 140 48 497 124 0 56 chr6 151472384 151472473 -37807081 - AluJb SINE Alu -16 296 213 318 214 86 0 chr6 151473601 151473671 -37805883 - MIR SINE MIR -7 255 180 2473 51 0 3 chr6 151474523 151474817 -37804737 - AluY SINE Alu -18 293 1 697 165 33 8 chr6 151477320 151477441 -37802113 - FLAM_A SINE Alu -8 125 2 414 289 59 69 chr6 151478599 151478903 -37800651 - MER102b DNA MER1_type -8 333 33 22 0 0 0 chr6 151479193 151479215 -37800339 + AT_rich Low_complexity Low_complexity 1 22 0 1919 168 3 13 chr6 151479583 151479898 -37799656 - AluJb SINE Alu 0 312 1 387 0 0 0 chr6 151480296 151480339 -37799215 + (CA)n Simple_repeat Simple_repeat 2 44 0 213 153 51 17 chr6 151481136 151481195 -37798359 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 1753 150 38 17 chr6 151482909 151483202 -37796352 - AluJo SINE Alu -12 300 2 22 0 0 0 chr6 151483677 151483699 -37795855 + AT_rich Low_complexity Low_complexity 1 22 0 2204 128 0 0 chr6 151484191 151484489 -37795065 - AluSx SINE Alu -14 298 1 22 0 0 0 chr6 151485218 151485240 -37794314 + AT_rich Low_complexity Low_complexity 1 22 0 1672 168 14 18 chr6 151485242 151485527 -37794027 - AluJo SINE Alu -25 287 4 321 311 91 19 chr6 151487292 151487458 -37792096 + MIR SINE MIR 37 212 -50 1968 144 0 3 chr6 151488789 151489111 -37790443 + AluSx SINE Alu 1 321 0 256 347 127 13 chr6 151489313 151489463 -37790091 + MIR3 SINE MIR 36 202 -6 561 0 0 0 chr6 151489514 151489579 -37789975 - L1P2 LINE L1 -395 5760 5696 * 3411 5 0 0 chr6 151489577 151489974 -37789580 + L1HS LINE L1 5750 6146 -9 270 0 0 0 chr6 151489974 151490004 -37789550 + (CAA)n Simple_repeat Simple_repeat 2 31 0 263 250 48 12 chr6 151490007 151490091 -37789463 - MIR SINE MIR -28 234 148 182 200 50 0 chr6 151490104 151490144 -37789410 + L2 LINE L2 3271 3312 -1 1904 153 0 3 chr6 151490509 151490797 -37788757 - AluJb SINE Alu -25 287 1 647 289 66 40 chr6 151490822 151491171 -37788383 - L1MC4a LINE L1 -1926 5882 5525 321 359 28 7 chr6 151491811 151491953 -37787601 - MER5A DNA MER1_type -44 145 1 1523 186 20 34 chr6 151492063 151492358 -37787196 - AluJo SINE Alu -21 291 1 2383 95 0 0 chr6 151492397 151492701 -37786853 - AluY SINE Alu -7 304 1 6214 145 41 9 chr6 151492857 151493350 -37786204 - L1MA4 LINE L1 -5 6295 5819 360 0 0 0 chr6 151493350 151493390 -37786164 + (TA)n Simple_repeat Simple_repeat 2 41 0 6214 145 41 9 chr6 151493390 151494995 -37784559 - L1MA4 LINE L1 -481 5819 4130 566 350 10 5 chr6 151495085 151495288 -37784266 + MIR SINE MIR 59 262 0 30 27 0 0 chr6 151495637 151495674 -37783880 + AT_rich Low_complexity Low_complexity 1 37 0 1110 186 176 13 chr6 151495928 151496229 -37783325 + MLT1A2 LTR MaLR 25 374 0 419 316 105 13 chr6 151496584 151496812 -37782742 + MIR SINE MIR 2 250 -12 2205 138 8 8 chr6 151496868 151497223 -37782331 + THE1A LTR MaLR 1 355 0 341 301 161 0 chr6 151497570 151497713 -37781841 + MIR3 SINE MIR 42 207 -1 1746 180 3 32 chr6 151497761 151498072 -37781482 - AluJo SINE Alu -10 302 1 2436 77 0 0 chr6 151498553 151498850 -37780704 + AluY SINE Alu 1 297 -14 280 262 123 33 chr6 151499084 151499206 -37780348 - MIR3 SINE MIR -72 136 4 1734 153 0 11 chr6 151499485 151499753 -37779801 + AluJo SINE Alu 1 265 -47 3737 48 0 0 chr6 151499753 151500212 -37779342 + L1PA5 LINE L1 5696 6154 0 294 257 54 0 chr6 151500501 151500575 -37778979 + L2 LINE L2 2976 3053 -219 2715 32 0 0 chr6 151501044 151501354 -37778200 + AluY SINE Alu 2 311 0 605 324 11 6 chr6 151501753 151501929 -37777625 - MIR SINE MIR -79 183 7 184 143 0 29 chr6 151503113 151503148 -37776406 - L2 LINE L2 -17 3296 3263 1236 262 131 18 chr6 151503558 151504293 -37775261 - L2 LINE L2 -7 3306 2476 286 250 138 50 chr6 151504296 151504456 -37775098 + L2 LINE L2 3140 3313 0 1946 161 7 0 chr6 151504957 151505261 -37774293 + AluSx SINE Alu 1 306 -6 412 185 0 12 chr6 151505470 151505551 -37774003 + MIR SINE MIR 183 262 0 197 356 93 17 chr6 151505590 151505708 -37773846 - L2 LINE L2 -10 3262 3136 825 209 26 0 chr6 151507657 151507810 -37771744 + FAM SINE Alu 1 157 -18 208 240 40 0 chr6 151510605 151510655 -37768899 + MIR SINE MIR 114 165 -97 620 283 218 17 chr6 151510707 151511216 -37768338 - L2 LINE L2 -21 3292 2672 1973 133 7 10 chr6 151511297 151511598 -37767956 + AluSx SINE Alu 1 300 -12 2130 115 23 7 chr6 151511665 151511969 -37767585 + AluSx SINE Alu 1 309 -3 1391 144 19 5 chr6 151512030 151512245 -37767309 - AluJo SINE Alu -9 303 86 2810 6 0 13 chr6 151512386 151512701 -37766853 + AluY SINE Alu 1 311 0 1676 160 13 62 chr6 151513068 151513227 -37766327 - AluJb SINE Alu -20 292 154 2185 89 34 10 chr6 151513227 151513520 -37766034 - AluSq SINE Alu -10 303 4 1676 160 13 62 chr6 151513520 151513667 -37765887 - AluJb SINE Alu -158 154 1 388 289 33 0 chr6 151514327 151514479 -37765075 - MER113 DNA MER1_type? -34 487 331 411 260 19 10 chr6 151514514 151514618 -37764936 + L2 LINE L2 3209 3313 0 2273 101 0 0 chr6 151514942 151515239 -37764315 + AluSx SINE Alu 1 297 -15 1744 168 3 26 chr6 151515248 151515551 -37764003 + AluJb SINE Alu 1 296 -16 281 310 18 18 chr6 151515723 151515836 -37763718 + MER94 DNA DNA 22 134 0 210 234 153 45 chr6 151516045 151516156 -37763398 - MIR SINE MIR -62 146 24 2140 98 3 3 chr6 151516625 151516934 -37762620 - AluSx SINE Alu 0 309 1 224 329 82 27 chr6 151517077 151517223 -37762331 - L3b LINE CR1 -22 1561 1408 323 239 0 14 chr6 151517848 151517919 -37761635 + L2 LINE L2 3230 3299 -14 197 313 156 10 chr6 151518912 151519008 -37760546 + L2 LINE L2 3147 3256 -16 218 238 72 131 chr6 151519814 151520011 -37759543 - MIR SINE MIR -49 213 32 192 40 0 0 chr6 151521074 151521099 -37758455 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 459 311 97 10 chr6 151521341 151521537 -37758017 + MIR SINE MIR 40 252 -10 573 272 100 0 chr6 151521634 151521814 -37757740 + MIR SINE MIR 57 254 -8 2378 77 10 10 chr6 151522203 151522516 -37757038 - AluSp SINE Alu 0 313 1 22 35 0 0 chr6 151522742 151522771 -37756783 + AT_rich Low_complexity Low_complexity 1 29 0 373 183 0 54 chr6 151523379 151523472 -37756082 - Tigger7 DNA MER2_type -10 2577 2490 1368 184 45 0 chr6 151523478 151523723 -37755831 - Tigger7 DNA MER2_type -477 256 1 296 184 26 0 chr6 151523838 151523914 -37755640 - MER116 DNA Mariner -2 78 1 317 109 0 0 chr6 151523929 151523975 -37755579 + MER68 LTR ERV1 1 46 -516 23 33 0 0 chr6 151523975 151524005 -37755549 + AT_rich Low_complexity Low_complexity 1 30 0 364 296 80 8 chr6 151524732 151524857 -37754697 - L2 LINE L2 -16 3256 3123 2208 93 0 14 chr6 151526652 151526968 -37752586 + AluSx SINE Alu 1 312 0 207 321 0 0 chr6 151527498 151527554 -37752000 - L2 LINE L2 -6 3266 3211 327 194 0 0 chr6 151527752 151527814 -37751740 + MER46A DNA MER2_type 175 236 0 24 0 0 0 chr6 151528986 151529010 -37750544 + AT_rich Low_complexity Low_complexity 1 24 0 1122 193 40 29 chr6 151529243 151529517 -37750037 - L1MC1 LINE L1 -13 6320 6044 2093 128 0 0 chr6 151529911 151530236 -37749318 - AluSx SINE Alu 0 325 1 763 203 0 0 chr6 151531324 151531457 -37748097 - FLAM_A SINE Alu 0 133 1 2299 82 3 3 chr6 151532443 151532747 -37746807 + AluSx SINE Alu 1 304 -8 2020 153 0 0 chr6 151534800 151535094 -37744460 - AluJo SINE Alu -14 298 5 257 333 63 0 chr6 151536647 151536758 -37742796 - MIR SINE MIR -33 229 112 855 184 61 138 chr6 151537528 151537919 -37741635 + MLT1A1 LTR MaLR 5 365 0 321 327 235 18 chr6 151538601 151538882 -37740672 - L2 LINE L2 -6 3266 2925 25 31 0 0 chr6 151539208 151539240 -37740314 + AT_rich Low_complexity Low_complexity 1 32 0 1797 167 24 11 chr6 151539260 151539631 -37739923 - L1MA6 LINE L1 -290 6010 5635 1775 159 11 7 chr6 151540150 151540433 -37739121 + AluJb SINE Alu 1 284 -28 2271 114 0 7 chr6 151540539 151540845 -37738709 + AluSx SINE Alu 1 304 -8 375 292 77 30 chr6 151540900 151541068 -37738486 + MER5B DNA MER1_type 1 176 -2 238 260 0 0 chr6 151541221 151541271 -37738283 + Charlie2 DNA MER1_type 6 55 -2807 1083 185 84 103 chr6 151541274 151541749 -37737805 - Charlie4a DNA MER1_type -1 507 42 2251 103 13 7 chr6 151541868 151542168 -37737386 - AluSx SINE Alu -10 302 1 256 221 186 0 chr6 151542268 151542354 -37737200 + Charlie2b DNA MER1_type 556 657 -2125 233 157 0 39 chr6 151542407 151542458 -37737096 + MER47A DNA MER2_type 1 49 -317 493 292 19 19 chr6 151542625 151542779 -37736775 + MER5A DNA MER1_type 36 189 0 908 252 48 82 chr6 151543492 151544007 -37735547 + MER34 LTR ERV1 1 498 -44 877 141 85 45 chr6 151544278 151544602 -37734952 - MER21B LTR ERV1 -6 857 405 1814 194 88 22 chr6 151544781 151545188 -37734366 - MER21B LTR ERV1 -429 434 1 2323 96 0 7 chr6 151546328 151546629 -37732925 + AluSg SINE Alu 1 299 -11 2241 81 3 10 chr6 151546834 151547129 -37732425 - AluSc SINE Alu -15 294 2 184 257 0 0 chr6 151547381 151547416 -37732138 - L2 LINE L2 -43 3270 3236 2037 74 53 0 chr6 151547445 151547757 -37731797 + AluY SINE Alu 1 311 0 2014 157 16 13 chr6 151547761 151548143 -37731411 - MER57A LTR ERV1 -18 385 3 1948 126 20 23 chr6 151548319 151548620 -37730934 + AluSq SINE Alu 1 300 -13 37 0 0 0 chr6 151548834 151548871 -37730683 + AT_rich Low_complexity Low_complexity 1 37 0 1921 96 4 0 chr6 151548971 151549222 -37730332 + AluSp SINE Alu 51 302 -11 2070 150 102 10 chr6 151549295 151549689 -37729865 + MER34C LTR ERV1 1 430 -155 5292 109 62 16 chr6 151549723 151550333 -37729221 + Tigger1 DNA MER2_type 1170 1834 -584 2171 97 4 0 chr6 151550333 151550661 -37728893 + AluSg SINE Alu 1 329 0 5292 109 62 16 chr6 151550661 151550913 -37728641 + Tigger1 DNA MER2_type 1834 2073 -345 1347 136 47 8 chr6 151550917 151550966 -37728588 + Tigger1 DNA MER2_type 2174 2220 -198 2255 112 0 7 chr6 151550966 151551271 -37728283 - AluSx SINE Alu -9 303 1 1347 136 47 8 chr6 151551271 151551457 -37728097 + Tigger1 DNA MER2_type 2220 2418 0 566 200 104 0 chr6 151551478 151551613 -37727941 + MER34B LTR ERV1 415 563 -2 468 0 0 0 chr6 151552691 151552743 -37726811 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 1714 154 33 0 chr6 151552743 151553016 -37726538 - AluJo SINE Alu -30 282 1 1704 177 20 0 chr6 151553041 151553335 -37726219 + AluJo SINE Alu 1 300 -12 1516 218 93 12 chr6 151553641 151554127 -37725427 + L1MB1 LINE L1 2371 2895 -3251 1467 230 74 55 chr6 151554150 151554677 -37724877 + MER34C LTR ERV1 49 585 0 10252 167 44 21 chr6 151554680 151554808 -37724746 + L1MB1 LINE L1 2915 3039 -3129 1789 194 0 0 chr6 151554808 151555292 -37724262 + AluJo SINE Alu 1 484 0 10252 167 44 21 chr6 151555292 151558335 -37721219 + L1MB1 LINE L1 3039 6166 -2 286 261 34 11 chr6 151558362 151558450 -37721104 + L1ME LINE L1 5550 5639 -482 23 54 0 0 chr6 151558673 151558710 -37720844 + AT_rich Low_complexity Low_complexity 1 37 0 714 172 22 30 chr6 151560470 151560604 -37718950 + FLAM_A SINE Alu 1 133 0 2072 142 23 0 chr6 151561098 151561401 -37718153 + AluSx SINE Alu 1 310 -2 457 299 82 57 chr6 151561647 151561891 -37717663 - MIR SINE MIR -12 250 1 353 321 0 18 chr6 151562135 151562247 -37717307 - MIR SINE MIR -65 143 34 1996 135 31 9 chr6 151562720 151563039 -37716515 + MER44D DNA MER2_type 14 609 0 661 145 58 36 chr6 151563184 151563322 -37716232 - L2 LINE L2 0 3313 3173 215 370 30 20 chr6 151564037 151564137 -37715417 - MIR SINE MIR -131 131 31 28 29 0 0 chr6 151564965 151565000 -37714554 + AT_rich Low_complexity Low_complexity 1 35 0 244 132 0 0 chr6 151566648 151566686 -37712868 - MER20 DNA MER1_type -25 194 157 504 206 119 24 chr6 151566693 151566819 -37712735 - MIR SINE MIR -13 249 112 2261 117 18 0 chr6 151566862 151567196 -37712358 - MER47A DNA MER2_type 0 366 27 1528 139 60 53 chr6 151567684 151568104 -37711450 - AluJb SINE Alu 0 422 1 1874 129 36 0 chr6 151568741 151569050 -37710504 - L1MA9 LINE L1 -5 6307 5988 208 135 0 0 chr6 151571252 151571289 -37708265 + (A)n Simple_repeat Simple_repeat 1 37 0 409 266 127 8 chr6 151571955 151572207 -37707347 - L1ME4a LINE L1 -264 5857 5576 651 292 168 49 chr6 151572300 151572930 -37706624 - L2 LINE L2 -101 3212 2492 1797 169 11 0 chr6 151573140 151573424 -37706130 - AluSx SINE Alu -15 297 11 347 276 17 9 chr6 151573585 151573701 -37705853 - L1ME LINE L1 -484 5637 5521 546 125 167 0 chr6 151574704 151574800 -37704754 - MER3 DNA MER1_type 0 209 98 246 314 64 43 chr6 151574922 151575062 -37704492 - MIR3 SINE MIR -13 195 53 221 276 17 0 chr6 151575150 151575208 -37704346 + (TATATG)n Simple_repeat Simple_repeat 3 61 0 2546 199 125 9 chr6 151575208 151575905 -37703649 + L1MC4 LINE L1 6975 7752 -290 1817 215 28 14 chr6 151575900 151576337 -37703217 + L1 LINE L1 2305 2747 -3399 * 489 186 52 0 chr6 151576747 151576844 -37702710 + Tigger3b DNA MER2_type 1 102 -1129 * 5655 109 50 14 chr6 151576842 151576909 -37702645 + Tigger3b DNA MER2_type 274 337 -2691 1769 140 16 42 chr6 151576909 151577216 -37702338 + AluJb SINE Alu 1 299 -13 5655 109 50 14 chr6 151577216 151578073 -37701481 + Tigger3b DNA MER2_type 337 1231 0 313 87 0 0 chr6 151579104 151579150 -37700404 - Tigger4(Zombi) DNA MER2_type -464 2267 2222 * 945 142 55 0 chr6 151579147 151579306 -37700248 - Tigger4(Zombi) DNA MER2_type -2683 48 -2 580 224 70 7 chr6 151579315 151579458 -37700096 - MER33 DNA MER1_type -172 152 1 1924 158 3 0 chr6 151579776 151580067 -37699487 - AluJb SINE Alu -20 292 1 498 299 125 58 chr6 151580403 151580552 -37699002 + L2 LINE L2 1338 1476 -1838 2107 122 3 3 chr6 151580552 151580848 -37698706 + AluSx SINE Alu 1 296 -16 498 299 125 58 chr6 151580848 151581267 -37698287 + L2 LINE L2 1476 1944 -1370 315 330 116 33 chr6 151581329 151581605 -37697949 + L2 LINE L2 2194 2492 -822 2493 104 22 0 chr6 151581775 151582131 -37697423 + THE1B LTR MaLR 1 364 0 1372 158 9 0 chr6 151583072 151583293 -37696261 + THE1B LTR MaLR 57 279 -85 199 229 125 42 chr6 151583294 151583390 -37696164 - MIR3 SINE MIR -53 155 52 363 330 85 0 chr6 151584544 151584662 -37694892 - L2 LINE L2 0 3272 3145 493 251 139 27 chr6 151584674 151584861 -37694693 + L2 LINE L2 3101 3308 -5 202 279 0 59 chr6 151585632 151585700 -37693854 - L3 LINE CR1 -207 1370 1307 300 75 0 0 chr6 151585832 151585872 -37693682 + Alu SINE Alu 1 40 -268 255 313 107 0 chr6 151586530 151586642 -37692912 - L2 LINE L2 -976 2338 2215 2243 92 7 0 chr6 151587074 151587367 -37692187 + AluSc SINE Alu 1 295 -14 2091 115 3 0 chr6 151589462 151589748 -37689806 - AluSx SINE Alu -19 293 7 23 0 0 0 chr6 151589837 151589860 -37689694 + AT_rich Low_complexity Low_complexity 1 23 0 1693 105 129 0 chr6 151589906 151590195 -37689359 + AluSg SINE Alu 1 321 0 412 18 35 0 chr6 151591866 151591923 -37687631 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 203 286 286 22 chr6 151596329 151596511 -37683043 + MIR SINE MIR 25 254 -8 827 211 25 0 chr6 151596529 151596690 -37682864 - MIR SINE MIR -21 241 77 21 36 0 0 chr6 151596998 151597026 -37682528 + AT_rich Low_complexity Low_complexity 1 28 0 476 296 121 22 chr6 151597465 151597688 -37681866 + MIR SINE MIR 18 262 0 2119 129 0 0 chr6 151597695 151597989 -37681565 - AluSg SINE Alu -16 294 1 207 108 27 0 chr6 151604450 151604487 -37675067 + A-rich Low_complexity Low_complexity 3 40 0 313 286 163 20 chr6 151604602 151604749 -37674805 - MIR SINE MIR -67 195 28 349 326 88 0 chr6 151606071 151606218 -37673336 - MIR SINE MIR -82 180 21 222 118 0 0 chr6 151607786 151607820 -37671734 + (A)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr6 151607884 151607905 -37671649 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 151608325 151608346 -37671208 + AT_rich Low_complexity Low_complexity 1 21 0 969 72 0 43 chr6 151611008 151611146 -37668408 - FRAM SINE Alu -15 161 30 21 0 0 0 chr6 151611146 151611167 -37668387 + AT_rich Low_complexity Low_complexity 1 21 0 294 29 0 0 chr6 151612479 151612514 -37667040 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr6 151612838 151612867 -37666687 + AT_rich Low_complexity Low_complexity 1 29 0 430 199 199 15 chr6 151613019 151613155 -37666399 + MIR SINE MIR 29 189 -73 24 0 0 0 chr6 151613209 151613233 -37666321 + AT_rich Low_complexity Low_complexity 1 24 0 483 239 110 0 chr6 151615552 151615715 -37663839 + MIR SINE MIR 65 245 -17 906 185 11 28 chr6 151616501 151616679 -37662875 + FAM SINE Alu 1 175 0 319 224 0 0 chr6 151617579 151617646 -37661908 + L1MC4 LINE L1 6641 6707 -1335 205 233 70 0 chr6 151618014 151618057 -37661497 - L2 LINE L2 -15 3257 3212 391 300 179 55 chr6 151618167 151618728 -37660826 - L2 LINE L2 -25 3288 2651 184 272 0 158 chr6 151618750 151618864 -37660690 - L2 LINE L2 -794 2520 2425 187 162 0 27 chr6 151618946 151618983 -37660571 - MIR SINE MIR -154 54 19 2115 96 20 3 chr6 151619302 151619595 -37659959 + AluSx SINE Alu 1 298 -14 345 238 74 134 chr6 151619800 151620002 -37659552 + MIR SINE MIR 46 235 -27 2291 95 0 0 chr6 151620170 151620465 -37659089 + AluSx SINE Alu 1 295 -17 667 136 0 80 chr6 151620466 151620591 -37658963 + AluSg/x SINE Alu 133 247 -63 1228 157 0 18 chr6 151620591 151620814 -37658740 + AluSg/x SINE Alu 82 300 -10 1921 101 36 0 chr6 151621232 151621509 -37658045 + AluSx SINE Alu 1 287 -25 483 143 0 24 chr6 151621746 151621830 -37657724 - AluJb SINE Alu -24 288 207 214 191 43 0 chr6 151624531 151624578 -37654976 + L2 LINE L2 3223 3271 -1 24 0 0 0 chr6 151625182 151625206 -37654348 + AT_rich Low_complexity Low_complexity 1 24 0 1999 107 0 4 chr6 151625206 151625487 -37654067 - AluSx SINE Alu -31 281 2 206 352 9 0 chr6 151625598 151625610 -37653944 + GA-rich Low_complexity Low_complexity 2 12 -95 2158 133 0 0 chr6 151625610 151625918 -37653636 + AluSx SINE Alu 1 308 -4 206 352 9 0 chr6 151625918 151626010 -37653544 + GA-rich Low_complexity Low_complexity 12 107 0 342 220 33 11 chr6 151626370 151626461 -37653093 + LTR67 LTR ERVL 457 549 -8 47 19 0 0 chr6 151626659 151626713 -37652841 + AT_rich Low_complexity Low_complexity 1 54 0 1541 159 6 105 chr6 151626813 151626963 -37652591 + AluJb SINE Alu 2 103 -199 2390 85 0 10 chr6 151626963 151627270 -37652284 - AluSg1 SINE Alu -5 304 1 1541 159 6 105 chr6 151627270 151627452 -37652102 + AluJb SINE Alu 103 301 -1 199 324 114 19 chr6 151628021 151628126 -37651428 + MER5A DNA MER1_type 7 121 -68 3042 128 15 0 chr6 151628216 151628683 -37650871 + MER1A DNA MER1_type 56 529 0 323 351 13 26 chr6 151628863 151629014 -37650540 - L2 LINE L2 -1 3271 3123 186 43 0 0 chr6 151629063 151629086 -37650468 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 4756 98 7 21 chr6 151629088 151629620 -37649934 - L1PA13 LINE L1 -19 6144 5625 2285 100 30 0 chr6 151629620 151629921 -37649633 - AluSg SINE Alu 0 310 1 4756 98 7 21 chr6 151629921 151630147 -37649407 - L1PA13 LINE L1 -538 5625 5397 2345 66 26 7 chr6 151630148 151630451 -37649103 - AluSc SINE Alu 0 309 1 698 294 92 33 chr6 151630488 151630689 -37648865 - L2 LINE L2 -909 2405 2217 1822 161 0 0 chr6 151630689 151630969 -37648585 + AluJo SINE Alu 1 280 -32 225 65 0 0 chr6 151630969 151631000 -37648554 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 698 294 92 33 chr6 151631000 151631134 -37648420 - L2 LINE L2 -1096 2218 2049 631 194 90 0 chr6 151631150 151631294 -37648260 - MLT1F LTR MaLR 0 542 386 252 140 40 0 chr6 151631284 151631334 -37648220 + Alu SINE Alu 243 294 -6 * 357 231 98 52 chr6 151631346 151631519 -37648035 + L1ME4a LINE L1 5930 6110 -11 2316 96 0 0 chr6 151631609 151631902 -37647652 - AluSx SINE Alu -18 294 2 324 0 0 0 chr6 151631907 151631943 -37647611 + (TG)n Simple_repeat Simple_repeat 1 36 0 501 257 103 0 chr6 151631998 151632134 -37647420 + FRAM SINE Alu 4 153 -23 317 250 125 35 chr6 151633171 151633315 -37646239 - MLT1J2 LTR MaLR -22 428 272 207 0 0 0 chr6 151633385 151633408 -37646146 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1064 103 7 0 chr6 151633408 151633563 -37645991 - L1PB2 LINE L1 -4 6147 5992 2245 108 0 7 chr6 151633608 151633915 -37645639 + AluSx SINE Alu 1 305 -7 756 226 40 24 chr6 151633915 151634053 -37645501 + Charlie4a DNA MER1_type 69 214 -1747 2178 107 0 20 chr6 151634053 151634353 -37645201 + AluSg SINE Alu 1 294 -16 756 226 40 24 chr6 151634353 151634466 -37645088 + Charlie4a DNA MER1_type 214 324 -184 1349 236 143 48 chr6 151634472 151634955 -37644599 + MLT1F LTR MaLR 11 539 -3 288 139 16 101 chr6 151634959 151634986 -37644568 + Charlie4a DNA MER1_type 321 349 -1612 2307 97 7 13 chr6 151634986 151635296 -37644258 - AluSq SINE Alu -5 308 1 288 139 16 101 chr6 151635296 151635397 -37644157 + Charlie4a DNA MER1_type 349 438 -70 692 217 0 0 chr6 151635397 151635526 -37644028 + FLAM_A SINE Alu 1 129 -4 23 0 0 0 chr6 151635526 151635549 -37644005 + AT_rich Low_complexity Low_complexity 1 23 0 254 234 0 39 chr6 151635549 151635626 -37643928 + Charlie4a DNA MER1_type 426 499 -9 2469 82 3 0 chr6 151635634 151635938 -37643616 + AluSg SINE Alu 1 305 -5 343 238 0 0 chr6 151636500 151636563 -37642991 - L2 LINE L2 -5 3267 3205 841 160 18 12 chr6 151636595 151636764 -37642790 + MLT1A1 LTR MaLR 1 170 -195 1805 168 49 34 chr6 151636790 151637326 -37642228 + MLT2A2 LTR ERVL 1 545 -9 612 242 47 11 chr6 151637482 151637672 -37641882 + MLT1A1 LTR MaLR 162 358 -7 389 365 11 45 chr6 151638151 151638329 -37641225 - MER91A DNA MER1_type -2 194 23 885 201 6 45 chr6 151639046 151639225 -37640329 + MER5A DNA MER1_type 18 189 0 1282 111 0 32 chr6 151640348 151640362 -37639192 + AluSg/x SINE Alu 119 132 -178 2081 147 0 0 chr6 151640362 151640661 -37638893 + AluSx SINE Alu 1 299 -13 1282 111 0 32 chr6 151640661 151640835 -37638719 + AluSg/x SINE Alu 132 301 -9 1176 212 0 5 chr6 151640883 151641105 -37638449 + MER58A DNA MER1_type 1 221 -3 1790 143 37 4 chr6 151641974 151642247 -37637307 + AluJo SINE Alu 1 282 -30 189 196 0 0 chr6 151642659 151642705 -37636849 + GA-rich Low_complexity Low_complexity 3 48 0 1289 183 0 18 chr6 151642755 151642974 -37636580 - AluJb SINE Alu -97 215 1 247 219 49 12 chr6 151643042 151643124 -37636430 - L1M4 LINE L1 -864 5282 5198 989 129 0 0 chr6 151643165 151643297 -37636257 - AluJb SINE Alu -180 132 1 732 148 11 27 chr6 151643303 151643486 -37636068 + CT-rich Low_complexity Low_complexity 1 180 0 462 219 73 24 chr6 151643490 151643613 -37635941 - FLAM_C SINE Alu -4 129 1 276 275 106 28 chr6 151643615 151643833 -37635721 - L1M4 LINE L1 -985 5161 4927 180 0 0 0 chr6 151643833 151643853 -37635701 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 10674 82 2 1 chr6 151694332 151696612 -37582942 + L1PA7 LINE L1 3827 6149 -5 2397 86 0 0 chr6 151696619 151696921 -37582633 + AluY SINE Alu 1 302 -9 537 113 12 12 chr6 151696948 151697028 -37582526 + FLAM SINE Alu 47 126 -17 912 150 39 6 chr6 151697885 151698065 -37581489 - Charlie1 DNA MER1_type -200 2561 2376 1167 133 79 0 chr6 151698208 151698411 -37581143 - L1PA16 LINE L1 -9 6157 5939 842 161 186 5 chr6 151698411 151698610 -37580944 - MER21A LTR ERV1 -696 235 1 5409 210 34 20 chr6 151698610 151699112 -37580442 - L1 LINE L1 -952 5194 4700 216 0 0 0 chr6 151699112 151699136 -37580418 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 5409 210 34 20 chr6 151699136 151699411 -37580143 - L1 LINE L1 -1446 4700 4430 231 36 0 0 chr6 151699411 151699439 -37580115 + (TG)n Simple_repeat Simple_repeat 1 28 0 5409 210 34 20 chr6 151699439 151699618 -37579936 - L1 LINE L1 -1716 4430 4255 1486 129 155 23 chr6 151699618 151699882 -37579672 + AluJb SINE Alu 6 304 -8 5409 210 34 20 chr6 151699882 151700384 -37579170 - L1 LINE L1 -1891 4255 3714 637 300 110 30 chr6 151700716 151701179 -37578375 + LTR33 LTR ERVL 14 513 -8 658 220 47 81 chr6 151701365 151701501 -37578053 + L1MC5 LINE L1 7076 7215 -746 1985 134 17 0 chr6 151701501 151701791 -37577763 - AluJb SINE Alu -17 295 1 658 220 47 81 chr6 151701791 151702391 -37577163 + L1MC5 LINE L1 7215 7925 -36 2208 100 6 26 chr6 151702502 151702813 -37576741 - AluSx SINE Alu -7 305 1 229 222 0 0 chr6 151703075 151703120 -37576434 + Zaphod DNA AcHobo 23 67 -3964 238 354 0 0 chr6 151703166 151703248 -37576306 + MER115 DNA AcHobo 150 231 -462 530 231 82 0 chr6 151703346 151703493 -37576061 + MER115 DNA AcHobo 459 617 -76 1381 208 20 27 chr6 151703497 151703790 -37575764 + AluJo SINE Alu 5 295 -17 461 200 44 7 chr6 151703798 151703933 -37575621 + L1M4 LINE L1 4118 4257 -1889 913 222 124 71 chr6 151703972 151704490 -37575064 + L1M4 LINE L1 4564 5108 -1038 181 135 39 0 chr6 151704500 151704552 -37575002 + (TA)n Simple_repeat Simple_repeat 1 54 0 1682 149 0 4 chr6 151704628 151704877 -37574677 + AluSx SINE Alu 1 248 -64 385 179 11 11 chr6 151704899 151704994 -37574560 + GA-rich Low_complexity Low_complexity 3 97 0 2419 223 103 40 chr6 151704998 151705535 -37574019 + L1ME1 LINE L1 4524 5026 -1140 1501 134 134 26 chr6 151705535 151705804 -37573750 + AluSg1 SINE Alu 1 298 -11 2419 223 103 40 chr6 151705804 151706550 -37573004 + L1ME1 LINE L1 5026 5916 -250 1509 169 10 30 chr6 151706550 151706852 -37572702 - AluJo SINE Alu -5 307 12 2419 223 103 40 chr6 151706852 151707011 -37572543 + L1ME1 LINE L1 5916 6063 -103 331 44 0 0 chr6 151707011 151707056 -37572498 + L1MA5 LINE L1 6254 6298 -2 1575 184 35 0 chr6 151707061 151707349 -37572205 + AluJb SINE Alu 1 298 -14 1412 198 60 0 chr6 151707349 151707617 -37571937 - AluJb SINE Alu -28 284 1 651 206 0 11 chr6 151707625 151707809 -37571745 + L1MC5 LINE L1 7660 7841 -120 193 200 0 22 chr6 151709286 151709331 -37570223 - MIR SINE MIR -47 215 172 241 273 0 0 chr6 151709348 151709403 -37570151 + MLT1L LTR MaLR 143 197 -418 203 319 0 66 chr6 151710058 151710113 -37569441 + MIR SINE MIR 97 145 -117 1621 167 50 33 chr6 151710113 151710412 -37569142 + AluJo SINE Alu 1 304 -8 203 319 0 66 chr6 151710412 151710447 -37569107 + MIR SINE MIR 145 181 -81 1858 125 14 17 chr6 151711197 151711485 -37568069 + AluJo SINE Alu 1 287 -25 22 0 0 0 chr6 151711679 151711701 -37567853 + AT_rich Low_complexity Low_complexity 1 22 0 10290 86 8 2 chr6 151712408 151714596 -37564958 + L1PA7 LINE L1 3962 6154 0 1796 194 0 0 chr6 151715181 151715475 -37564079 + AluJo SINE Alu 1 294 -18 1731 188 53 13 chr6 151715639 151716016 -37563538 + MSTD LTR MaLR 1 392 -4 21 0 0 0 chr6 151716253 151716274 -37563280 + AT_rich Low_complexity Low_complexity 1 21 0 297 277 133 14 chr6 151716522 151716895 -37562659 - L1ME LINE L1 -502 5594 5170 1290 278 68 47 chr6 151716923 151717492 -37562062 - L1ME LINE L1 -4572 1689 1090 2127 114 3 0 chr6 151717492 151717789 -37561765 + AluSx SINE Alu 1 298 -14 1290 278 68 47 chr6 151717789 151718195 -37561359 - L1ME LINE L1 -5171 1090 694 697 218 0 15 chr6 151718235 151718368 -37561186 - FLAM_A SINE Alu -1 132 2 491 306 99 29 chr6 151718518 151718817 -37560737 - L1ME LINE L1 -5737 333 10 1405 152 0 5 chr6 151718920 151719137 -37560417 + AluJb SINE Alu 85 300 -12 528 300 105 38 chr6 151719137 151719720 -37559834 - L1M4 LINE L1 -1059 5087 4466 209 236 57 0 chr6 151719727 151719850 -37559704 + (TTATA)n Simple_repeat Simple_repeat 2 131 0 1952 120 7 0 chr6 151719876 151720177 -37559377 + AluSx SINE Alu 6 308 0 1242 140 0 26 chr6 151721067 151721295 -37558259 + L1MB8 LINE L1 5855 6076 -102 2016 136 0 3 chr6 151721307 151721602 -37557952 - AluSx SINE Alu -18 294 1 2198 136 3 0 chr6 151723897 151724207 -37555347 - AluSx SINE Alu -1 311 1 731 306 103 18 chr6 151725273 151725776 -37553778 + L2 LINE L2 2368 2913 -401 1790 131 77 0 chr6 151725975 151726235 -37553319 + AluSx SINE Alu 1 280 -32 235 167 14 28 chr6 151726238 151726310 -37553244 + GA-rich Low_complexity Low_complexity 4 74 0 217 331 186 21 chr6 151727196 151727341 -37552213 - MIR SINE MIR -82 180 12 2094 142 3 0 chr6 151728855 151729158 -37550396 - AluSx SINE Alu -8 304 1 2280 121 0 0 chr6 151730702 151731009 -37548545 - AluSx SINE Alu -5 307 1 1737 162 3 37 chr6 151731472 151731769 -37547785 - AluJo SINE Alu -25 287 1 195 42 0 0 chr6 151731829 151731853 -37547701 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2111 110 10 27 chr6 151732139 151732439 -37547115 + AluSx SINE Alu 1 295 -17 309 290 60 0 chr6 151732465 151732565 -37546989 + MIR SINE MIR 155 260 -2 1722 174 0 27 chr6 151733029 151733328 -37546226 + AluJb SINE Alu 2 292 -20 521 258 48 46 chr6 151733902 151734240 -37545314 + L1MC4a LINE L1 5684 5801 -320 2131 127 0 7 chr6 151734420 151734719 -37544835 - AluJb SINE Alu -15 297 1 269 331 38 45 chr6 151735292 151735425 -37544129 + L2 LINE L2 3141 3272 0 187 280 213 0 chr6 151735493 151735568 -37543986 + MIR3 SINE MIR 96 186 -22 976 148 19 6 chr6 151735950 151736112 -37543442 + FRAM SINE Alu 1 163 -13 223 353 101 8 chr6 151737414 151737533 -37542021 + MIR3 SINE MIR 11 140 -68 1725 180 10 6 chr6 151737546 151737857 -37541697 + AluJb SINE Alu 1 312 0 1803 125 66 31 chr6 151738339 151738627 -37540927 - AluJb SINE Alu -14 298 1 2317 117 36 25 chr6 151738827 151739187 -37540367 + THE1B LTR MaLR 1 364 0 185 222 0 0 chr6 151740095 151740131 -37539423 - L2 LINE L2 -9 3263 3228 1699 168 0 0 chr6 151740658 151740950 -37538604 - L1MB3 LINE L1 -318 5865 5574 312 314 79 7 chr6 151741769 151741909 -37537645 - L1ME3A LINE L1 -239 5931 5782 2272 107 10 0 chr6 151741912 151742221 -37537333 + AluSx SINE Alu 1 312 0 234 299 94 3 chr6 151742277 151742487 -37537067 - L1ME3A LINE L1 -532 5589 5497 1478 102 0 0 chr6 151743039 151743226 -37536328 + AluSx SINE Alu 1 187 -125 21 36 0 0 chr6 151743503 151743531 -37536023 + AT_rich Low_complexity Low_complexity 1 28 0 388 314 93 12 chr6 151744185 151744357 -37535197 + MIR SINE MIR 1 186 -76 1809 140 29 0 chr6 151744369 151744641 -37534913 - AluSx SINE Alu -8 304 25 213 234 106 0 chr6 151744676 151744723 -37534831 + MIR SINE MIR 196 247 -15 1856 156 0 0 chr6 151745062 151745337 -37534217 + AluJb SINE Alu 6 280 -32 189 94 0 0 chr6 151745337 151745369 -37534185 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 212 182 204 0 chr6 151745654 151745698 -37533856 + L2 LINE L2 3215 3267 -5 1812 179 3 7 chr6 151746946 151747242 -37532312 - AluJo SINE Alu -17 295 1 738 183 0 8 chr6 151747900 151748031 -37531523 + FLAM_A SINE Alu 1 130 -3 26 50 0 0 chr6 151748031 151748071 -37531483 + AT_rich Low_complexity Low_complexity 1 40 0 557 284 87 34 chr6 151748143 151748498 -37531056 + L1ME4a LINE L1 4068 4441 -1705 374 248 165 67 chr6 151748693 151748827 -37530727 + L1ME4a LINE L1 5408 5527 -594 1842 159 3 41 chr6 151748827 151749147 -37530407 - AluJo SINE Alu 0 312 5 374 248 165 67 chr6 151749147 151749266 -37530288 + L1ME4a LINE L1 5527 5686 -435 21 36 0 0 chr6 151749276 151749304 -37530250 + AT_rich Low_complexity Low_complexity 1 28 0 207 241 19 0 chr6 151749335 151749389 -37530165 + (TA)n Simple_repeat Simple_repeat 1 55 0 265 258 69 31 chr6 151749585 151749744 -37529810 + L1ME4a LINE L1 5946 6110 -11 2260 114 3 0 chr6 151750412 151750711 -37528843 - AluSx SINE Alu -12 300 1 4179 212 84 44 chr6 151750931 151752490 -37527064 - L1MC3 LINE L1 -743 5403 3909 496 162 0 0 chr6 151752490 151752564 -37526990 + AluS SINE Alu 17 90 -222 1981 141 0 0 chr6 151752493 151752770 -37526784 + AluSx SINE Alu 20 296 -16 4179 212 84 44 chr6 151752564 151753176 -37526378 - L1MC3 LINE L1 -2236 3910 4121 21 71 0 0 chr6 151753322 151753364 -37526190 + AT_rich Low_complexity Low_complexity 1 42 0 628 234 183 0 chr6 151753434 151753631 -37525923 - MIR SINE MIR -10 252 20 2479 59 0 7 chr6 151753842 151754147 -37525407 + AluY SINE Alu 1 303 -8 216 308 48 10 chr6 151755074 151755178 -37524376 + GA-rich Low_complexity Low_complexity 4 111 0 421 293 40 27 chr6 151755446 151755596 -37523958 + MIR SINE MIR 42 193 -69 1596 150 3 83 chr6 151756148 151756461 -37523093 - AluJo SINE Alu -24 288 1 2343 92 0 3 chr6 151756603 151756907 -37522647 + AluY SINE Alu 1 303 -8 833 223 156 26 chr6 151756991 151757395 -37522159 + L1ME3 LINE L1 5620 6100 -70 672 212 228 0 chr6 151757441 151757625 -37521929 - MLT1D LTR MaLR 0 505 280 680 186 78 12 chr6 151757651 151757818 -37521736 - MLT1D LTR MaLR -308 197 20 2103 139 0 0 chr6 151758308 151758618 -37520936 + AluSx SINE Alu 3 312 0 1789 171 10 3 chr6 151759169 151759461 -37520093 - AluJb SINE Alu -18 294 1 1977 116 9 64 chr6 151759791 151760120 -37519434 - L1MC1 LINE L1 -5 6328 6018 2123 132 0 10 chr6 151760298 151760608 -37518946 + AluSx SINE Alu 1 307 -5 826 201 107 45 chr6 151761383 151761692 -37517862 + L1MC5 LINE L1 7392 7719 -242 1837 159 7 3 chr6 151761711 151762012 -37517542 + AluJo SINE Alu 1 302 -10 1553 157 57 32 chr6 151762867 151763147 -37516407 - AluJo SINE Alu -25 287 1 255 125 0 0 chr6 151763181 151763221 -37516333 + (TA)n Simple_repeat Simple_repeat 1 40 0 2048 120 17 7 chr6 151763269 151763569 -37515985 + L1PA16 LINE L1 5859 6161 -5 207 284 0 63 chr6 151765003 151765098 -37514456 - L2 LINE L2 -2 3311 3223 225 0 0 0 chr6 151765106 151765131 -37514423 + (CA)n Simple_repeat Simple_repeat 1 25 0 242 229 0 57 chr6 151765136 151765206 -37514348 - L2 LINE L2 -85 3228 3163 5254 218 25 39 chr6 151767642 151769071 -37510483 + L1MC1 LINE L1 3989 5397 -749 510 156 0 0 chr6 151769075 151769152 -37510402 + AluJ/FLAM SINE Alu 2 78 -234 693 169 32 8 chr6 151769155 151769279 -37510275 + AluJo/FRAM SINE Alu 186 312 0 5242 155 34 19 chr6 151769279 151769332 -37510222 + L1MC1 LINE L1 5390 5441 -892 2485 75 0 0 chr6 151769332 151769640 -37509914 + AluY SINE Alu 1 308 -3 5242 155 34 19 chr6 151769640 151770497 -37509057 + L1MC1 LINE L1 5441 6314 -19 312 200 0 0 chr6 151770497 151770562 -37508992 + (TA)n Simple_repeat Simple_repeat 2 66 0 799 222 48 0 chr6 151770890 151771057 -37508497 - MER5B DNA MER1_type -1 177 3 198 0 0 0 chr6 151771307 151771329 -37508225 + (T)n Simple_repeat Simple_repeat 1 22 0 404 250 0 37 chr6 151772150 151772258 -37507296 - L2 LINE L2 -643 2671 2568 304 252 52 109 chr6 151773043 151773108 -37506446 - L3 LINE CR1 -191 1386 1319 1398 172 153 0 chr6 151773108 151773369 -37506185 - AluJo SINE Alu -11 301 1 304 252 52 109 chr6 151773369 151773513 -37506041 - L3 LINE CR1 -258 1319 1189 357 236 203 14 chr6 151773828 151773976 -37505578 - MER5A DNA MER1_type -5 184 9 1053 47 79 0 chr6 151774476 151774603 -37504951 - MER85 DNA T2_type -2 137 1 417 172 31 0 chr6 151775221 151775285 -37504269 + AluSx SINE Alu 2 67 -245 2005 89 0 0 chr6 151775305 151775553 -37504001 + AluSx SINE Alu 52 299 -13 2229 118 0 0 chr6 151776244 151776541 -37503013 - AluSx SINE Alu -15 297 1 269 241 0 0 chr6 151778228 151778286 -37501268 + CT-rich Low_complexity Low_complexity 3 60 0 407 285 69 102 chr6 151778286 151778572 -37500982 - L2 LINE L2 0 3272 3003 2271 106 0 0 chr6 151778572 151778875 -37500679 - AluSx SINE Alu -9 303 1 407 285 69 102 chr6 151778875 151779020 -37500534 - L2 LINE L2 -269 3003 2855 285 302 60 43 chr6 151779061 151779293 -37500261 + L2 LINE L2 2946 3181 -132 1945 141 17 0 chr6 151780156 151780455 -37499099 + AluSx SINE Alu 1 304 -8 1747 171 6 19 chr6 151780460 151780776 -37498778 + AluJb SINE Alu 1 312 0 223 293 67 67 chr6 151781227 151781497 -37498057 + L2 LINE L2 2661 2930 -384 1618 132 100 36 chr6 151781593 151781873 -37497681 + AluJb SINE Alu 6 303 -9 1406 178 4 41 chr6 151782222 151782492 -37497062 + AluJb SINE Alu 35 294 -18 602 84 21 21 chr6 151782610 151782705 -37496849 - AluSg/x SINE Alu -10 300 206 212 338 117 19 chr6 151782763 151782917 -37496637 - L2 LINE L2 -1285 2029 1861 2269 101 13 0 chr6 151783739 151784047 -37495507 - AluSq SINE Alu -1 312 1 1955 144 17 3 chr6 151785054 151785352 -37494202 + AluSx SINE Alu 1 302 -10 200 204 0 0 chr6 151785390 151785434 -37494120 - L2 LINE L2 0 3313 3270 252 0 0 0 chr6 151785618 151785646 -37493908 + (TA)n Simple_repeat Simple_repeat 1 28 0 1609 170 59 7 chr6 151785649 151785920 -37493634 - AluJb SINE Alu -27 285 1 362 217 90 36 chr6 151785941 151786107 -37493447 - LTR7 LTR ERV1 -38 412 238 1622 173 31 76 chr6 151786697 151786851 -37492703 + MLT1A1 LTR MaLR 1 160 -205 1949 132 4 0 chr6 151786851 151787156 -37492398 + AluSx SINE Alu 1 306 0 1622 173 31 76 chr6 151787156 151787382 -37492172 + MLT1A1 LTR MaLR 160 365 0 22 0 0 0 chr6 151787449 151787471 -37492083 + AT_rich Low_complexity Low_complexity 1 22 0 199 0 31 31 chr6 151788376 151788408 -37491146 + (GAGAA)n Simple_repeat Simple_repeat 3 34 0 1357 130 29 5 chr6 151789142 151789387 -37490167 - AluJb SINE Alu 0 320 71 2448 141 107 0 chr6 151789863 151790247 -37489307 + MSTC LTR MaLR 1 425 -3 885 239 117 85 chr6 151790321 151790844 -37488710 + MLT1H1 LTR MaLR 3 554 -1 181 340 0 0 chr6 151791313 151791363 -37488191 + L3 LINE CR1 1501 1550 -27 225 268 0 42 chr6 151791376 151791447 -37488107 - MIR SINE MIR -29 233 166 670 250 7 26 chr6 151791466 151791618 -37487936 - FRAM SINE Alu -21 155 7 2317 88 0 52 chr6 151791633 151791992 -37487562 - AluSx SINE Alu 0 343 2 388 250 121 17 chr6 151791996 151792112 -37487442 - MIR SINE MIR -106 156 29 180 315 0 19 chr6 151793166 151793220 -37486334 + L3 LINE CR1 1501 1553 -24 324 215 34 13 chr6 151793446 151793595 -37485959 + GA-rich Low_complexity Low_complexity 3 154 0 4826 161 33 23 chr6 151793832 151794795 -37484759 + L1MB7 LINE L1 4615 5587 -597 2154 121 3 10 chr6 151794795 151795102 -37484452 + AluSq SINE Alu 1 305 -8 4826 161 33 23 chr6 151795102 151795687 -37483867 + L1MB7 LINE L1 5587 6165 -19 22 0 0 0 chr6 151795687 151795709 -37483845 + AT_rich Low_complexity Low_complexity 1 22 0 771 98 15 15 chr6 151795886 151796019 -37483535 + (GGAA)n Simple_repeat Simple_repeat 2 134 0 202 205 54 18 chr6 151796016 151796128 -37483426 + GA-rich Low_complexity Low_complexity 6 121 0 * 188 0 74 0 chr6 151796280 151796307 -37483247 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 25 51 0 0 chr6 151796734 151796773 -37482781 + AT_rich Low_complexity Low_complexity 1 39 0 879 194 6 6 chr6 151796774 151796939 -37482615 + FRAM SINE Alu 1 165 -11 24 0 0 0 chr6 151797063 151797087 -37482467 + AT_rich Low_complexity Low_complexity 1 24 0 235 257 105 9 chr6 151797226 151797331 -37482223 - L2 LINE L2 -974 2340 2226 195 42 0 0 chr6 151797432 151797456 -37482098 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2604 169 38 21 chr6 151797481 151797959 -37481595 + MER66B LTR ERV1 1 486 0 2021 109 36 26 chr6 151798078 151798380 -37481174 - AluSx SINE Alu -7 305 1 1895 130 0 40 chr6 151799823 151800123 -37479431 - AluSx SINE Alu -24 288 1 260 182 0 0 chr6 151800226 151800270 -37479284 + MIR SINE MIR 218 261 -1 1231 132 20 29 chr6 151800415 151800619 -37478935 + AluJb SINE Alu 84 285 -27 184 353 0 0 chr6 151800668 151800719 -37478835 + L2 LINE L2 3128 3178 -94 270 257 191 0 chr6 151800902 151801007 -37478547 - L2 LINE L2 0 3313 3189 1773 163 7 3 chr6 151802399 151802708 -37476846 - AluJb SINE Alu 0 310 1 464 146 37 24 chr6 151803521 151803603 -37475951 - AluJ/FRAM SINE Alu -13 299 217 21 0 0 0 chr6 151804197 151804218 -37475336 + AT_rich Low_complexity Low_complexity 1 21 0 365 290 20 75 chr6 151804840 151805040 -37474514 + MIR SINE MIR 1 189 -73 1336 179 120 25 chr6 151805041 151805315 -37474239 + AluJb SINE Alu 1 300 -2 505 154 39 0 chr6 151805330 151805454 -37474100 + AluSg/x SINE Alu 203 329 0 1229 140 0 0 chr6 151805454 151805625 -37473929 + AluJb SINE Alu 131 301 -11 620 215 36 67 chr6 151806342 151806727 -37472827 + LTR37B LTR ERV1 89 464 -4 876 146 0 29 chr6 151808097 151808234 -37471320 + AluJo SINE Alu 1 133 -169 998 205 0 0 chr6 151808297 151808463 -37471091 + AluJo SINE Alu 137 302 0 1588 134 112 11 chr6 151809185 151809454 -37470100 + AluJb SINE Alu 1 296 -16 180 77 0 0 chr6 151811054 151811080 -37468474 + (TC)n Simple_repeat Simple_repeat 1 26 0 2294 93 0 16 chr6 151812255 151812566 -37466988 + AluSq SINE Alu 1 306 -7 1021 136 0 0 chr6 151812958 151813105 -37466449 - AluJb SINE Alu -2 310 164 845 152 0 8 chr6 151813245 151813377 -37466177 + FLAM_C SINE Alu 2 132 -1 234 234 234 32 chr6 151813618 151813712 -37465842 - MIR3 SINE MIR -9 199 87 221 319 79 41 chr6 151813853 151813995 -37465559 - MIR3 SINE MIR -54 154 5 1139 198 95 8 chr6 151814032 151814285 -37465269 + MER58 DNA MER1_type 1 275 -66 2937 145 38 9 chr6 151814288 151815106 -37464448 + L1PA16 LINE L1 4824 5684 -482 477 139 0 0 chr6 151815107 151815179 -37464375 + L1PA16 LINE L1 5897 5968 -198 1991 124 6 43 chr6 151815179 151815502 -37464052 + AluJo SINE Alu 1 311 -1 2338 101 0 16 chr6 151815839 151816155 -37463399 - AluSx SINE Alu -1 311 1 342 282 147 6 chr6 151816157 151816313 -37463241 + MIR SINE MIR 23 200 -62 26 30 0 0 chr6 151818428 151818461 -37461093 + GC_rich Low_complexity Low_complexity 1 33 0 252 0 0 0 chr6 151818705 151818733 -37460821 + (CCGCG)n Simple_repeat Simple_repeat 4 31 0 2150 83 3 51 chr6 151819960 151820272 -37459282 - AluSq SINE Alu -16 297 1 2396 80 0 3 chr6 151820342 151820644 -37458910 + AluSx SINE Alu 3 303 -9 572 113 12 12 chr6 151820671 151820751 -37458803 + FLAM SINE Alu 47 126 -17 1008 150 39 6 chr6 151821608 151821788 -37457766 - Charlie1 DNA MER1_type -200 2561 2376 1267 133 79 0 chr6 151821931 151822134 -37457420 - L1PA16 LINE L1 -9 6157 5939 928 161 186 5 chr6 151822134 151822333 -37457221 - MER21A LTR ERV1 -696 235 1 6074 210 34 20 chr6 151822333 151822835 -37456719 - L1 LINE L1 -952 5194 4700 216 0 0 0 chr6 151822835 151822859 -37456695 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 6074 210 34 20 chr6 151822859 151823134 -37456420 - L1 LINE L1 -1446 4700 4430 231 36 0 0 chr6 151823134 151823162 -37456392 + (TG)n Simple_repeat Simple_repeat 1 28 0 6074 210 34 20 chr6 151823162 151823341 -37456213 - L1 LINE L1 -1716 4430 4255 1475 129 155 23 chr6 151823341 151823605 -37455949 + AluJb SINE Alu 6 304 -8 6074 210 34 20 chr6 151823605 151824107 -37455447 - L1 LINE L1 -1891 4255 3714 768 292 112 32 chr6 151824439 151824902 -37454652 + LTR33 LTR ERVL 14 513 -8 798 213 49 83 chr6 151825088 151825224 -37454330 + L1MC5 LINE L1 7076 7215 -746 1975 134 17 0 chr6 151825224 151825514 -37454040 - AluJb SINE Alu -17 295 1 798 213 49 83 chr6 151825514 151826114 -37453440 + L1MC5 LINE L1 7215 7925 -36 2207 100 6 26 chr6 151826225 151826536 -37453018 - AluSx SINE Alu -7 305 1 241 222 0 0 chr6 151826798 151826843 -37452711 + Zaphod DNA AcHobo 23 67 -3964 255 354 0 0 chr6 151826889 151826971 -37452583 + MER115 DNA AcHobo 150 231 -462 600 238 80 0 chr6 151827069 151827220 -37452334 + MER115 DNA AcHobo 459 621 -72 1349 208 20 27 chr6 151827220 151827513 -37452041 + AluJo SINE Alu 5 295 -17 621 185 38 25 chr6 151827521 151827678 -37451876 + L1M4 LINE L1 4118 4276 -1870 1178 219 124 70 chr6 151827697 151828214 -37451340 + L1M4 LINE L1 4564 5108 -1038 181 135 39 0 chr6 151828224 151828276 -37451278 + (TA)n Simple_repeat Simple_repeat 1 54 0 1671 149 0 4 chr6 151828352 151828601 -37450953 + AluSx SINE Alu 1 248 -64 385 179 11 11 chr6 151828623 151828718 -37450836 + GA-rich Low_complexity Low_complexity 3 97 0 2784 225 95 39 chr6 151828722 151829259 -37450295 + L1ME1 LINE L1 4524 5029 -1137 1548 123 134 26 chr6 151829259 151829528 -37450026 + AluSg1 SINE Alu 1 298 -11 2784 225 95 39 chr6 151829528 151830274 -37449280 + L1ME1 LINE L1 5029 5914 -252 1496 169 10 30 chr6 151830274 151830576 -37448978 - AluJo SINE Alu -5 307 12 2784 225 95 39 chr6 151830576 151830735 -37448819 + L1ME1 LINE L1 5914 6063 -103 357 44 0 0 chr6 151830735 151830780 -37448774 + L1MA5 LINE L1 6254 6298 -2 1566 184 35 0 chr6 151830785 151831073 -37448481 + AluJb SINE Alu 1 298 -14 1402 198 60 0 chr6 151831073 151831341 -37448213 - AluJb SINE Alu -28 284 1 1098 212 7 7 chr6 151831349 151831627 -37447927 + L1MC5 LINE L1 7660 7937 -24 1977 141 7 0 chr6 151831718 151832002 -37447552 - AluSx SINE Alu -26 286 1 281 207 116 96 chr6 151832095 151832293 -37447261 + L1M4 LINE L1 4641 4842 -1304 1892 146 14 0 chr6 151832579 151832867 -37446687 - AluSx SINE Alu -20 292 1 652 292 46 28 chr6 151833011 151833381 -37446173 - L1MC4 LINE L1 -824 7002 6619 605 15 0 0 chr6 151833701 151833768 -37445786 + THE1B LTR MaLR 2 68 -296 43 20 0 0 chr6 151833768 151833818 -37445736 + AT_rich Low_complexity Low_complexity 1 50 0 27 0 0 0 chr6 151834331 151834358 -37445196 + AT_rich Low_complexity Low_complexity 1 27 0 807 101 50 0 chr6 151834364 151834483 -37445071 + MLT2C2 LTR ERVL 1 125 -339 1907 165 3 19 chr6 151834483 151834684 -37444870 - AluJo SINE Alu -1 311 108 1757 143 32 108 chr6 151834684 151834729 -37444825 - THE1C LTR MaLR 0 375 328 2031 114 64 0 chr6 151834729 151835010 -37444544 + AluSx SINE Alu 1 299 -13 1757 143 32 108 chr6 151835010 151835032 -37444522 - THE1C LTR MaLR -47 328 306 2275 108 3 7 chr6 151835032 151835337 -37444217 - AluSp SINE Alu -9 304 1 1757 143 32 108 chr6 151835337 151835674 -37443880 - THE1C LTR MaLR -69 306 1 1907 165 3 19 chr6 151835674 151835788 -37443766 - AluJo SINE Alu -204 108 1 1229 128 104 5 chr6 151835788 151835999 -37443555 + MLT2C1 LTR ERVL 118 349 -48 1596 155 40 29 chr6 151836287 151836407 -37443147 + AluJb SINE Alu 1 118 -194 203 0 0 36 chr6 151836407 151836435 -37443119 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1596 155 40 29 chr6 151836435 151836592 -37442962 + AluJb SINE Alu 118 281 -31 2360 76 0 10 chr6 151836592 151836892 -37442662 - AluY SINE Alu -13 298 1 1916 154 0 0 chr6 151838032 151838317 -37441237 + AluSx SINE Alu 1 285 -27 249 174 0 22 chr6 151838351 151838397 -37441157 - MLT1K LTR MaLR -324 264 220 3449 119 34 60 chr6 151838684 151839297 -37440257 + MER4B LTR ERV1 1 597 -13 521 169 0 0 chr6 151839820 151839903 -37439651 - AluJ/FLAM SINE Alu -228 84 2 1022 212 73 15 chr6 151839904 151840178 -37439376 + Charlie2b DNA MER1_type 942 1231 -1551 792 164 45 164 chr6 151840213 151840429 -37439125 + Charlie2b DNA MER1_type 2127 2367 -495 2183 99 3 0 chr6 151840429 151840733 -37438821 - AluSx SINE Alu 0 305 1 792 164 45 164 chr6 151840733 151840763 -37438791 + Charlie2b DNA MER1_type 2367 2399 -463 1872 167 0 7 chr6 151840763 151841051 -37438503 + AluJb SINE Alu 1 286 -26 792 164 45 164 chr6 151841051 151841229 -37438325 + Charlie2b DNA MER1_type 2399 2502 -280 8120 23 0 2 chr6 151841246 151842464 -37437090 - L1PA3 LINE L1 -5 6150 4942 986 34 0 25 chr6 151842473 151842592 -37436962 - L1PA3 LINE L1 0 6155 6040 1781 242 84 43 chr6 151842661 151843222 -37436332 + MLT1E LTR MaLR 10 593 0 552 214 11 39 chr6 151843222 151843400 -37436154 + Charlie2b DNA MER1_type 2543 2715 -67 2154 127 0 37 chr6 151843519 151843843 -37435711 + AluSx SINE Alu 1 312 0 248 186 0 0 chr6 151843988 151844031 -37435523 - MIR SINE MIR -70 192 150 234 303 26 13 chr6 151844221 151844297 -37435257 - MIR SINE MIR -175 87 11 3700 164 29 10 chr6 151844440 151844847 -37434707 - L1MB3 LINE L1 -4 6179 5754 1965 176 51 14 chr6 151844847 151845199 -37434355 - MLT1A1 LTR MaLR 0 365 1 3700 164 29 10 chr6 151845199 151845418 -37434136 - L1MB3 LINE L1 -429 5754 5541 213 276 17 0 chr6 151845504 151845562 -37433992 - L3 LINE CR1 -5 1572 1514 2347 95 0 10 chr6 151846139 151846444 -37433110 - AluSx SINE Alu -10 302 1 268 382 64 0 chr6 151846613 151846723 -37432831 - L2 LINE L2 -14 3258 3142 356 211 183 10 chr6 151847117 151847221 -37432333 - L2 LINE L2 -3 3310 3189 542 115 81 0 chr6 151847252 151847339 -37432215 - AluS SINE Alu -217 95 2 308 352 79 22 chr6 151847339 151847606 -37431948 + L2 LINE L2 2615 2896 -418 474 149 53 21 chr6 151847981 151848075 -37431479 - MER94 DNA DNA -36 98 2 25 51 0 0 chr6 151848790 151848829 -37430725 + GC_rich Low_complexity Low_complexity 1 39 0 22 88 0 0 chr6 151848963 151849020 -37430534 + GC_rich Low_complexity Low_complexity 1 57 0 744 141 5 178 chr6 151849576 151849767 -37429787 + FRAM SINE Alu 1 158 -8 2369 67 3 0 chr6 151849778 151850062 -37429492 + AluSp SINE Alu 7 291 -22 1828 157 16 19 chr6 151850353 151850666 -37428888 - AluJo SINE Alu 0 312 1 1391 211 41 20 chr6 151851575 151851702 -37427852 + AluJo SINE Alu 2 125 -177 2067 112 7 7 chr6 151851702 151851996 -37427558 - AluSx SINE Alu -18 294 1 1391 211 41 20 chr6 151851996 151852162 -37427392 + AluJo SINE Alu 125 301 -1 23 33 0 0 chr6 151852190 151852220 -37427334 + AT_rich Low_complexity Low_complexity 1 30 0 251 237 17 0 chr6 151853311 151853370 -37426184 + L2 LINE L2 3213 3272 0 408 55 0 0 chr6 151853658 151853713 -37425841 + (TG)n Simple_repeat Simple_repeat 2 56 0 1940 124 3 18 chr6 151853713 151853995 -37425559 - AluSx SINE Alu -34 278 1 317 121 0 1 chr6 151854016 151854074 -37425480 - FLAM SINE Alu -8 125 82 956 350 105 11 chr6 151854485 151855093 -37424461 - L3 LINE CR1 -79 1498 834 307 115 0 19 chr6 151855306 151855358 -37424196 - MLT1A1-int LTR MaLR -1684 51 1 1658 210 16 22 chr6 151855358 151855725 -37423829 - MLT1A1 LTR MaLR 0 365 1 1877 163 3 23 chr6 151855818 151856124 -37423430 + AluSx SINE Alu 1 300 -12 315 365 50 0 chr6 151856237 151856396 -37423158 + MIR SINE MIR 3 169 -93 24 0 0 0 chr6 151856780 151856804 -37422750 + AT_rich Low_complexity Low_complexity 1 24 0 2058 129 34 45 chr6 151857243 151857622 -37421932 - THE1C LTR MaLR 0 375 1 9555 129 22 42 chr6 151857622 151859231 -37420323 - THE1C-int LTR MaLR 0 1580 4 1698 130 98 0 chr6 151859234 151859549 -37420005 - THE1C LTR MaLR 0 375 30 314 347 41 101 chr6 151860044 151860352 -37419202 - L2 LINE L2 -27 3245 2973 1780 149 3 76 chr6 151860352 151860680 -37418874 - AluJb SINE Alu -8 304 1 314 347 41 101 chr6 151860680 151860835 -37418719 - L2 LINE L2 -299 2973 2810 1876 134 52 0 chr6 151861097 151861388 -37418166 - AluSq SINE Alu -7 306 1 520 176 129 94 chr6 151861396 151861448 -37418106 + MER5B DNA MER1_type 3 52 -126 2206 129 0 0 chr6 151861448 151861750 -37417804 - AluSg SINE Alu -8 302 1 520 176 129 94 chr6 151861750 151861867 -37417687 + MER5B DNA MER1_type 52 178 0 1820 259 75 76 chr6 151862445 151862833 -37416721 + L1MC5 LINE L1 5946 6333 -1628 2106 129 3 7 chr6 151862833 151863135 -37416419 + AluSx SINE Alu 1 301 -11 1820 259 75 76 chr6 151863135 151863256 -37416298 + L1MC5 LINE L1 6333 6453 -1508 2107 84 7 14 chr6 151863256 151863543 -37416011 + AluY SINE Alu 15 299 -12 1820 259 75 76 chr6 151863543 151863976 -37415578 + L1MC5 LINE L1 6453 6885 -1076 300 53 0 0 chr6 151863976 151864014 -37415540 + (CA)n Simple_repeat Simple_repeat 1 38 0 1820 259 75 76 chr6 151864014 151865036 -37414518 + L1MC5 LINE L1 6885 7917 -44 1920 156 3 13 chr6 151865063 151865370 -37414184 + AluJb SINE Alu 1 304 -8 317 232 72 48 chr6 151865916 151866041 -37413513 - L2 LINE L2 -1 3312 3185 233 29 118 0 chr6 151866627 151866661 -37412893 + L1ME LINE L1 5843 5880 -290 497 304 51 0 chr6 151866686 151866844 -37412710 - L2 LINE L2 -557 2757 2592 678 297 153 37 chr6 151866927 151867307 -37412247 + L2 LINE L2 2890 3313 0 229 221 230 18 chr6 151867428 151867541 -37412013 + L2 LINE L2 2328 2464 -850 1753 156 0 26 chr6 151867740 151868047 -37411507 - AluJo SINE Alu -11 301 3 23 0 0 0 chr6 151868058 151868081 -37411473 + AT_rich Low_complexity Low_complexity 1 23 0 2174 134 13 0 chr6 151868151 151868458 -37411096 - AluSx SINE Alu -1 311 1 763 252 165 5 chr6 151869284 151869502 -37410052 + MIR SINE MIR 10 262 0 847 229 9 40 chr6 151869530 151869753 -37409801 + MER58A DNA MER1_type 1 216 -8 800 188 45 86 chr6 151870015 151870206 -37409348 + MER96B DNA MER1_type? 1 181 -236 1951 136 35 23 chr6 151870206 151870246 -37409308 - L1MA9 LINE L1 0 6312 6274 1780 163 0 19 chr6 151870246 151870553 -37409001 + AluJb SINE Alu 1 301 -11 1951 136 35 23 chr6 151870553 151870908 -37408646 - L1MA9 LINE L1 -38 6274 5912 800 188 45 86 chr6 151870908 151870961 -37408593 + MER96B DNA MER1_type? 181 235 -182 238 162 54 40 chr6 151872115 151872189 -37407365 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 25770 46 2 6 chr6 151872505 151876695 -37402859 - L1PA5 LINE L1 0 6154 1979 394 318 145 4 chr6 151876755 151877010 -37402544 - L2 LINE L2 -849 2465 2175 189 0 0 0 chr6 151877081 151877102 -37402452 + (T)n Simple_repeat Simple_repeat 1 21 0 205 191 0 0 chr6 151877118 151877160 -37402394 + T-rich Low_complexity Low_complexity 1 42 0 7642 14 0 0 chr6 151877163 151878377 -37401177 - L1HS LINE L1 0 6155 4942 7478 18 0 0 chr6 151878383 151879285 -37400269 + L1HS LINE L1 4050 4951 -1195 895 193 11 11 chr6 151879287 151879463 -37400091 + MER58A DNA MER1_type 49 224 0 187 244 73 12 chr6 151879477 151879559 -37399995 - L2 LINE L2 -1505 1809 1723 24 53 0 0 chr6 151879721 151879759 -37399795 + AT_rich Low_complexity Low_complexity 1 38 0 2206 101 34 0 chr6 151880354 151880650 -37398904 - AluSx SINE Alu -6 306 1 2085 102 17 14 chr6 151880968 151881262 -37398292 + AluSx SINE Alu 1 295 -17 2254 104 13 0 chr6 151881495 151881803 -37397751 - AluSx SINE Alu 0 312 1 473 279 141 87 chr6 151882426 151882910 -37396644 - MLT1K LTR MaLR -2 586 77 267 292 88 53 chr6 151883607 151883742 -37395812 - L2 LINE L2 -62 3210 3070 739 273 34 25 chr6 151883742 151883980 -37395574 + MIR SINE MIR 3 242 -20 1941 116 25 3 chr6 151883995 151884280 -37395274 - AluJb SINE Alu -21 291 1 264 351 52 29 chr6 151884624 151884798 -37394756 - MER5B DNA MER1_type 0 178 1 2168 98 40 7 chr6 151885904 151886201 -37393353 + AluSx SINE Alu 1 307 -5 189 0 0 0 chr6 151886573 151886594 -37392960 + (T)n Simple_repeat Simple_repeat 1 21 0 1941 18 9 0 chr6 151886614 151886842 -37392712 + L1PA4 LINE L1 5926 6155 0 875 199 165 31 chr6 151886893 151887184 -37392370 - L1ME3A LINE L1 0 6170 5841 1899 180 7 0 chr6 151887246 151887546 -37392008 - AluJb SINE Alu -10 302 1 191 130 0 22 chr6 151888024 151888070 -37391484 + (TA)n Simple_repeat Simple_repeat 1 45 0 338 79 53 0 chr6 151888158 151888234 -37391320 + (TA)n Simple_repeat Simple_repeat 1 80 0 1845 150 0 46 chr6 151888235 151888541 -37391013 - AluSx SINE Alu -20 292 1 2074 150 0 0 chr6 151888552 151888839 -37390715 - AluJb SINE Alu -25 287 1 1638 161 0 4 chr6 151889789 151890049 -37389505 + AluJb SINE Alu 1 259 -53 437 261 57 134 chr6 151890138 151890421 -37389133 + MIR SINE MIR 2 262 0 328 284 144 33 chr6 151890490 151890705 -37388849 - MIR SINE MIR -11 251 13 1987 129 0 71 chr6 151891332 151891456 -37388098 + AluSx SINE Alu 1 132 -180 2090 131 10 10 chr6 151891456 151891762 -37387792 - AluSq SINE Alu -7 306 1 1987 129 0 71 chr6 151891762 151891948 -37387606 + AluSx SINE Alu 132 289 -23 2208 93 0 0 chr6 151891966 151892283 -37387271 + AluSc SINE Alu 1 317 0 529 179 32 0 chr6 151893448 151893543 -37386011 + Tigger3(Golem) DNA MER2_type 1 98 -2931 * 2852 95 98 203 chr6 151893536 151893782 -37385772 + Tigger3(Golem) DNA MER2_type 2229 2499 -530 1165 91 23 23 chr6 151893782 151893980 -37385574 + AluSc SINE Alu 119 309 0 2852 95 98 203 chr6 151893980 151894452 -37385102 + Tigger3(Golem) DNA MER2_type 2499 3029 0 23 68 0 0 chr6 151894567 151894611 -37384943 + AT_rich Low_complexity Low_complexity 1 44 0 602 88 0 0 chr6 151894839 151894919 -37384635 + MADE1 DNA Mariner 1 80 0 896 116 16 0 chr6 151895259 151895388 -37384166 - FLAM_C SINE Alu -2 131 1 1497 180 28 25 chr6 151895397 151895680 -37383874 - AluJo SINE Alu -7 305 22 22 0 0 0 chr6 151896197 151896219 -37383335 + AT_rich Low_complexity Low_complexity 1 22 0 1938 125 52 7 chr6 151896873 151897161 -37382393 - AluSx SINE Alu -11 301 1 21 36 0 0 chr6 151897239 151897267 -37382287 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 151897641 151897663 -37381891 + AT_rich Low_complexity Low_complexity 1 22 0 1917 154 0 7 chr6 151897718 151898024 -37381530 - AluSx SINE Alu -8 304 1 1335 224 145 14 chr6 151898900 151899341 -37380213 - L1MC4a LINE L1 -1221 6587 6089 1237 199 133 15 chr6 151899345 151899677 -37379877 - L1MC4a LINE L1 -1928 5880 5510 1242 300 92 41 chr6 151899695 151900557 -37378997 - L1M4 LINE L1 -1896 4250 3434 2142 136 10 0 chr6 151900557 151900852 -37378702 + AluSx SINE Alu 5 302 -10 1242 300 92 41 chr6 151900852 151901021 -37378533 - L1M4 LINE L1 -2712 3434 3275 2362 93 3 0 chr6 151901021 151901322 -37378232 + AluSq SINE Alu 1 302 -11 1242 300 92 41 chr6 151901322 151902127 -37377427 - L1M4 LINE L1 -2871 3275 2319 2528 58 0 0 chr6 151902206 151902500 -37377054 - AluY SINE Alu -17 294 1 10674 82 29 1 chr6 151902507 151904787 -37374767 - L1PA7 LINE L1 -5 6149 3827 593 298 91 28 chr6 151905333 151905685 -37373869 - HAL1b LINE L1 -598 750 377 309 287 85 85 chr6 151905759 151906041 -37373513 - HAL1 LINE L1 -1134 1373 1092 349 310 174 17 chr6 151907220 151907507 -37372047 - L2 LINE L2 -1053 2261 1930 2194 127 7 0 chr6 151908333 151908641 -37370913 - AluSx SINE Alu -2 310 1 189 0 0 0 chr6 151908712 151908733 -37370821 + (TAA)n Simple_repeat Simple_repeat 2 22 0 39 22 0 0 chr6 151909368 151909414 -37370140 + AT_rich Low_complexity Low_complexity 1 46 0 394 330 211 21 chr6 151909494 151910010 -37369544 + L2 LINE L2 1852 2465 -849 24 32 0 0 chr6 151910087 151910118 -37369436 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr6 151910687 151910723 -37368831 + AT_rich Low_complexity Low_complexity 1 36 0 201 279 0 0 chr6 151911744 151911787 -37367767 - L2 LINE L2 -17 3255 3213 761 213 194 9 chr6 151911974 151912190 -37367364 + MIR SINE MIR 7 262 0 326 240 107 25 chr6 151912519 151912640 -37366914 + MIR SINE MIR 118 248 -14 1759 179 20 0 chr6 151912934 151913231 -37366323 + AluJb SINE Alu 1 303 -9 29 60 0 0 chr6 151913401 151913451 -37366103 + AT_rich Low_complexity Low_complexity 1 50 0 283 274 230 0 chr6 151913471 151913606 -37365948 + MIR SINE MIR 97 262 0 587 216 32 49 chr6 151913713 151913898 -37365656 + L1MC4 LINE L1 7861 8042 0 821 215 65 40 chr6 151915846 151916093 -37363461 + HAL1 LINE L1 2253 2505 -2 1685 123 31 15 chr6 151917815 151918076 -37361478 - AluJb SINE Alu -15 297 33 283 311 90 16 chr6 151918590 151918712 -37360842 + MIR SINE MIR 16 146 -62 222 118 0 0 chr6 151918728 151918762 -37360792 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 222 354 71 10 chr6 151918787 151918886 -37360668 - L2 LINE L2 -35 3237 3133 314 340 120 5 chr6 151918975 151919175 -37360379 + L2 LINE L2 2498 2720 -594 553 172 10 19 chr6 151919180 151919302 -37360252 + L1MC3 LINE L1 6214 7777 -1 525 260 202 41 chr6 151919333 151919796 -37359758 + L2 LINE L2 2730 3270 -2 589 211 0 0 chr6 151920207 151920311 -37359243 + FRAM SINE Alu 1 100 -76 1087 83 0 0 chr6 151920339 151920472 -37359082 + AluSg SINE Alu 1 133 -177 2404 78 0 0 chr6 151920472 151920765 -37358789 + AluSg SINE Alu 1 293 -17 22 0 0 0 chr6 151924098 151924120 -37355434 + AT_rich Low_complexity Low_complexity 1 22 0 183 234 36 124 chr6 151924714 151924851 -37354703 + MIR SINE MIR 27 151 -57 2187 119 0 13 chr6 151925231 151925410 -37354144 - AluSx SINE Alu 0 312 137 2189 112 7 7 chr6 151925410 151925706 -37353848 - AluSx SINE Alu -16 296 1 2187 119 0 13 chr6 151925706 151925828 -37353726 - AluSx SINE Alu -175 137 15 31 68 0 0 chr6 151926456 151926515 -37353039 + AT_rich Low_complexity Low_complexity 1 59 0 1128 259 93 26 chr6 151927436 151927910 -37351644 - MLT1H LTR MaLR -2 547 1 2352 98 3 0 chr6 151927942 151928247 -37351307 - AluSp SINE Alu -7 306 1 486 225 90 56 chr6 151929255 151929433 -37350121 - L1ME3 LINE L1 -3 6159 5976 974 126 0 15 chr6 151929503 151929638 -37349916 - FLAM_C SINE Alu 0 133 1 1405 161 44 79 chr6 151929815 151930132 -37349422 - AluJb SINE Alu -4 308 3 2509 114 27 41 chr6 151930601 151930970 -37348584 + THE1B LTR MaLR 1 364 0 292 351 91 41 chr6 151931973 151932315 -37347239 + L2 LINE L2 2381 2739 -575 389 328 74 34 chr6 151932328 151932641 -37346913 + L1M4 LINE L1 4075 4413 -1733 270 116 0 0 chr6 151932641 151932684 -37346870 + (TG)n Simple_repeat Simple_repeat 2 44 0 389 328 74 34 chr6 151932684 151932815 -37346739 + L1M4 LINE L1 4413 4537 -1609 203 122 24 24 chr6 151933287 151933328 -37346226 + CT-rich Low_complexity Low_complexity 2 42 0 434 271 157 46 chr6 151935070 151935350 -37344204 + L2 LINE L2 3003 3313 0 244 167 194 28 chr6 151936997 151937105 -37342449 - L1MC5 LINE L1 -30 7931 7806 2703 216 63 40 chr6 151937156 151937572 -37341982 - L1ME2 LINE L1 -10 6154 5749 2038 141 0 3 chr6 151937572 151937869 -37341685 - AluSx SINE Alu -16 296 1 2703 216 63 40 chr6 151937869 151938912 -37340642 - L1ME2 LINE L1 -415 5749 4614 271 261 15 0 chr6 151938914 151938979 -37340575 - L1ME2 LINE L1 -1805 4341 4276 182 300 0 0 chr6 151940211 151940261 -37339293 - L2 LINE L2 0 3313 3264 590 218 0 9 chr6 151941092 151941202 -37338352 - FLAM_A SINE Alu -30 112 4 862 171 82 0 chr6 151941474 151941620 -37337934 + AluJb SINE Alu 131 288 -24 241 316 13 13 chr6 151942123 151942202 -37337352 - MIR SINE MIR -25 237 159 435 347 55 26 chr6 151942817 151943125 -37336429 + L2 LINE L2 2429 2745 -569 2010 124 47 3 chr6 151943354 151943653 -37335901 + AluSq SINE Alu 1 312 -1 489 251 182 62 chr6 151943786 151943829 -37335725 + L1MC/D LINE L1 5255 5291 -2517 2223 110 0 3 chr6 151943829 151944129 -37335425 + AluSq SINE Alu 1 299 -14 489 251 182 62 chr6 151944129 151944388 -37335166 + L1MC/D LINE L1 5291 5518 -2290 2076 129 3 0 chr6 151944388 151944703 -37334851 - AluSx SINE Alu 0 316 1 489 251 182 62 chr6 151944703 151944847 -37334707 + L1MC/D LINE L1 5518 5758 -2050 664 216 45 0 chr6 151944900 151945034 -37334520 - MLT1F LTR MaLR -12 555 416 849 290 29 22 chr6 151945051 151945327 -37334227 - MLT1F LTR MaLR -264 278 1 277 276 292 26 chr6 151945611 151945803 -37333751 + L2 LINE L2 3030 3272 0 349 310 126 75 chr6 151948165 151949080 -37330474 + L1M2 LINE L1 442 1402 -5447 227 316 10 0 chr6 151949084 151949182 -37330372 - MIR3 SINE MIR -29 179 81 1704 176 7 3 chr6 151952004 151952293 -37327261 + AluJb SINE Alu 6 295 -17 1009 79 0 0 chr6 151952295 151952421 -37327133 + AluSc SINE Alu 138 263 -46 814 184 357 17 chr6 151953145 151953439 -37326115 - MLT2D LTR ERVL -14 400 7 1722 172 14 30 chr6 151953873 151954170 -37325384 - AluJo SINE Alu -18 294 3 1870 164 0 13 chr6 151954220 151954519 -37325035 + AluJb SINE Alu 1 295 -17 2411 53 0 0 chr6 151954521 151954838 -37324716 + AluY SINE Alu 1 317 0 3727 202 59 50 chr6 151955057 151955923 -37323631 - L1MCb LINE L1 -4853 1192 430 2594 70 0 0 chr6 151955923 151956235 -37323319 - AluSx SINE Alu 0 312 1 3727 202 59 50 chr6 151956235 151956668 -37322886 - L1MCb LINE L1 -5615 430 3 411 281 87 79 chr6 151957423 151957893 -37321661 + MLT1K LTR MaLR 2 475 -1 766 276 15 34 chr6 151958264 151958528 -37321026 - MIR SINE MIR -2 260 2 185 0 40 0 chr6 151958697 151958722 -37320832 + (TG)n Simple_repeat Simple_repeat 2 27 0 1215 171 11 71 chr6 151959022 151959046 -37320508 - L1MB7 LINE L1 0 6184 6160 920 108 7 50 chr6 151959046 151959185 -37320369 + FLAM_C SINE Alu 1 133 0 1215 171 11 71 chr6 151959185 151959429 -37320125 - L1MB7 LINE L1 -24 6160 5932 851 140 7 0 chr6 151960115 151960251 -37319303 + L1MB4 LINE L1 6044 6180 0 526 107 0 12 chr6 151960264 151960348 -37319206 + L1MB8 LINE L1 6096 6178 0 245 242 67 67 chr6 151960441 151960561 -37318993 + MLT1J LTR MaLR 327 446 -65 810 90 0 0 chr6 151960927 151961027 -37318527 + HY3 scRNA scRNA 1 100 -1 261 0 0 0 chr6 151961658 151961687 -37317867 + (TG)n Simple_repeat Simple_repeat 2 30 0 299 351 0 18 chr6 151962368 151962479 -37317075 + L2 LINE L2 3198 3306 -7 2200 109 3 3 chr6 151962678 151962981 -37316573 + AluSq SINE Alu 1 303 -10 1985 137 0 0 chr6 151963879 151964150 -37315404 - AluSx SINE Alu -41 271 1 2216 119 16 0 chr6 151964404 151964707 -37314847 - AluSx SINE Alu -4 308 1 1768 183 3 6 chr6 151965001 151965312 -37314242 - AluJo SINE Alu -2 310 1 2334 85 3 3 chr6 151967052 151967359 -37312195 + AluY SINE Alu 2 308 -3 2134 133 139 18 chr6 151967416 151967798 -37311756 + MSTA LTR MaLR 1 428 0 2135 206 204 15 chr6 151967921 151968582 -37310972 - LTR48 LTR ERV1 -1 786 1 484 250 0 0 chr6 151969443 151969555 -37309999 + L1ME3A LINE L1 6058 6169 -1 1551 160 52 59 chr6 151969610 151969917 -37309637 + AluJb SINE Alu 4 308 -4 217 325 24 24 chr6 151970196 151970279 -37309275 - MIR3 SINE MIR -23 185 103 288 339 58 16 chr6 151970321 151970535 -37309019 + MIR SINE MIR 33 256 -6 198 0 0 0 chr6 151970553 151970575 -37308979 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 217 239 65 43 chr6 151971478 151971570 -37307984 + L2 LINE L2 2713 2806 -508 268 309 58 92 chr6 151971649 151971856 -37307698 + L2 LINE L2 2955 3154 -118 1078 146 83 0 chr6 151973156 151973348 -37306206 - L1PA11 LINE L1 -2 6172 5965 6681 149 28 30 chr6 151973959 151974444 -37305110 + L1MC1 LINE L1 4614 5099 -1234 1628 148 60 21 chr6 151974444 151974728 -37304826 - AluJb SINE Alu -13 299 5 6681 149 28 30 chr6 151974728 151974865 -37304689 + L1MC1 LINE L1 5099 5235 -1098 1969 141 28 0 chr6 151974865 151975156 -37304398 + AluSx SINE Alu 1 299 -13 6681 149 28 30 chr6 151975156 151976002 -37303552 + L1MC1 LINE L1 5235 6075 -258 1552 163 10 44 chr6 151976002 151976344 -37303210 + AluJo SINE Alu 1 332 0 6681 149 28 30 chr6 151976344 151976590 -37302964 + L1MC1 LINE L1 6075 6320 -13 929 216 5 44 chr6 151977011 151977215 -37302339 - MER58A DNA MER1_type -15 209 14 1787 167 31 3 chr6 151977378 151977671 -37301883 - AluJb SINE Alu -11 301 1 305 169 56 56 chr6 151977731 151977820 -37301734 + L2 LINE L2 3221 3309 -4 1992 192 85 19 chr6 151978495 151978986 -37300568 + MER39 LTR ERV1 1 707 0 234 0 0 0 chr6 151979013 151979039 -37300515 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 285 29 0 0 chr6 151979038 151979072 -37300482 + (GA)n Simple_repeat Simple_repeat 1 34 0 363 333 48 11 chr6 151979190 151979376 -37300178 - MIR SINE MIR 0 262 70 555 227 49 25 chr6 151979378 151979541 -37300013 + MER96 DNA MER1_type? 8 174 -1 1495 204 130 74 chr6 151979655 151980331 -37299223 - Charlie2 DNA MER1_type 0 2862 2149 992 198 163 25 chr6 151980486 151980664 -37298890 - Charlie2 DNA MER1_type -685 2177 2025 2100 114 7 3 chr6 151980664 151980963 -37298591 - AluY SINE Alu -11 300 1 992 198 163 25 chr6 151980963 151981067 -37298487 - Charlie2 DNA MER1_type -837 2025 1856 525 290 15 62 chr6 151981069 151981341 -37298213 - Charlie2 DNA MER1_type -2457 325 67 25 65 0 0 chr6 151982330 151982376 -37297178 + AT_rich Low_complexity Low_complexity 1 46 0 1539 115 96 106 chr6 151982480 151982792 -37296762 - AluSx SINE Alu -3 309 1 764 175 66 33 chr6 151983587 151983770 -37295784 + MER45C DNA AcHobo 1 189 -764 500 252 121 14 chr6 151983962 151984201 -37295353 + MER45C DNA AcHobo 678 945 -8 384 175 175 10 chr6 151984335 151984438 -37295116 - LTR28 LTR ERV1 -166 854 735 273 317 50 0 chr6 151984541 151984642 -37294912 + MIR SINE MIR 13 118 -144 27 29 0 0 chr6 151984711 151984745 -37294809 + AT_rich Low_complexity Low_complexity 1 34 0 2002 178 61 180 chr6 151984902 151985840 -37293714 + LTR28 LTR ERV1 1 1019 -1 1631 216 89 35 chr6 151985887 151986094 -37293460 + LTR2 LTR ERV1 1 195 -254 186 43 0 0 chr6 151986094 151986117 -37293437 + (TTCTG)n Simple_repeat Simple_repeat 1 23 0 1631 216 89 35 chr6 151986117 151986334 -37293220 + LTR2 LTR ERV1 195 448 -1 1850 134 7 21 chr6 151986334 151986617 -37292937 - AluJb SINE Alu -33 279 1 580 275 177 37 chr6 151986772 151987179 -37292375 + L1ME LINE L1 5328 5791 -330 190 175 18 18 chr6 151987203 151987260 -37292294 + (TA)n Simple_repeat Simple_repeat 1 57 0 33 25 0 0 chr6 151987290 151987330 -37292224 + AT_rich Low_complexity Low_complexity 1 40 0 1993 123 39 0 chr6 151987330 151987615 -37291939 + AluSx SINE Alu 1 296 -16 372 205 0 137 chr6 151987759 151987876 -37291678 + MIR SINE MIR 8 108 -154 194 333 63 0 chr6 151987916 151987979 -37291575 - MIR SINE MIR -191 71 5 225 0 0 0 chr6 151988001 151988026 -37291528 + (GA)n Simple_repeat Simple_repeat 2 26 0 187 340 19 0 chr6 151988105 151988158 -37291396 + L2 LINE L2 3201 3254 -18 180 0 0 0 chr6 151988250 151988270 -37291284 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 2264 125 0 0 chr6 151988270 151988582 -37290972 + AluSx SINE Alu 1 312 0 390 21 0 0 chr6 151989625 151989672 -37289882 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 265 298 61 88 chr6 151989954 151990135 -37289419 - MIR3 SINE MIR -12 196 21 251 265 76 76 chr6 151990468 151990717 -37288837 + MLT1L LTR MaLR 34 282 -333 557 244 86 8 chr6 151990956 151991171 -37288383 - MER106B DNA MER1_type -1 1058 5 212 86 29 0 chr6 151991610 151991645 -37287909 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 2163 125 6 0 chr6 151991647 151991958 -37287596 - AluSp SINE Alu 0 313 1 487 271 81 45 chr6 151991969 151992190 -37287364 - MIR SINE MIR -14 248 20 2159 135 3 3 chr6 151992704 151993016 -37286538 - AluSx SINE Alu 0 312 1 195 100 0 0 chr6 151993899 151993929 -37285625 + (GA)n Simple_repeat Simple_repeat 1 30 0 1721 138 3 71 chr6 151994493 151994819 -37284735 - AluJb SINE Alu -8 304 1 344 241 105 19 chr6 151995029 151995191 -37284363 + L3 LINE CR1 1112 1287 -290 394 267 68 43 chr6 151995214 151995375 -37284179 - MIR3 SINE MIR -6 202 38 1063 170 0 6 chr6 151996289 151996471 -37283083 - FRAM SINE Alu 0 176 1 535 276 65 51 chr6 151996614 151996831 -37282723 - MIR SINE MIR -29 233 14 208 200 0 0 chr6 151996904 151996944 -37282610 + L2 LINE L2 3233 3272 0 285 206 48 0 chr6 151997255 151997318 -37282236 - MIR3 SINE MIR -38 170 105 2034 129 34 0 chr6 151997342 151997636 -37281918 + AluSx SINE Alu 1 304 -8 24 0 0 0 chr6 151998361 151998385 -37281169 + AT_rich Low_complexity Low_complexity 1 24 0 21 71 0 0 chr6 151998409 151998451 -37281103 + AT_rich Low_complexity Low_complexity 1 42 0 1320 214 48 17 chr6 151998756 151999046 -37280508 - AluJo SINE Alu -6 306 8 1102 217 65 31 chr6 151999262 151999552 -37280002 - MLT1C LTR MaLR 0 467 168 2145 114 0 23 chr6 151999578 151999884 -37279670 - AluSx SINE Alu -13 299 1 290 282 0 0 chr6 152000235 152000306 -37279248 + L2 LINE L2 3004 3074 -239 366 284 112 0 chr6 152000306 152000422 -37279132 + L2 LINE L2 3185 3313 0 1937 131 0 11 chr6 152000497 152000765 -37278789 - AluSx SINE Alu -42 270 6 305 325 17 8 chr6 152000986 152001103 -37278451 + L1ME4a LINE L1 5760 5877 -244 195 100 0 0 chr6 152001834 152001864 -37277690 + (TC)n Simple_repeat Simple_repeat 1 30 0 1498 124 16 114 chr6 152002099 152002406 -37277148 - AluSx SINE Alu -14 298 22 394 374 47 0 chr6 152002484 152002698 -37276856 - MIR SINE MIR -2 260 37 27 0 0 0 chr6 152003562 152003589 -37275965 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr6 152003879 152003903 -37275651 + AT_rich Low_complexity Low_complexity 1 24 0 241 216 68 68 chr6 152004021 152004169 -37275385 - L1ME4a LINE L1 0 6121 5974 343 315 81 50 chr6 152004328 152004382 -37275172 - L1ME LINE L1 -509 5612 5561 2161 101 3 14 chr6 152004382 152004679 -37274875 - AluSx SINE Alu -18 294 1 343 315 81 50 chr6 152004679 152004846 -37274708 - L1ME LINE L1 -560 5561 5384 1631 139 0 33 chr6 152006462 152006736 -37272818 + AluJo SINE Alu 34 298 -14 405 0 0 0 chr6 152007048 152007093 -37272461 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1685 165 3 34 chr6 152007103 152007394 -37272160 - AluJo SINE Alu -30 282 1 507 218 60 40 chr6 152007621 152007677 -37271877 - LTR16C LTR ERVL 0 491 438 2970 173 39 26 chr6 152007677 152008220 -37271334 - MER44D DNA MER2_type 0 605 1 507 218 60 40 chr6 152008220 152008345 -37271209 - LTR16C LTR ERVL -53 438 273 1668 113 88 42 chr6 152008383 152008666 -37270888 + AluJo SINE Alu 1 296 -16 535 297 104 43 chr6 152008888 152009262 -37270292 - MLT1J LTR MaLR -4 507 111 279 0 0 0 chr6 152009307 152009338 -37270216 + (T)n Simple_repeat Simple_repeat 1 31 0 5301 180 68 84 chr6 152009516 152010877 -37268677 + MER45R DNA AcHobo 2 1341 -240 1426 194 73 22 chr6 152010881 152011195 -37268359 - MER2 DNA MER2_type -15 330 1 1026 164 12 92 chr6 152011274 152011366 -37268188 + MER45R DNA AcHobo 1343 1441 -140 1962 157 49 49 chr6 152011366 152011754 -37267800 + MLT1B LTR MaLR 1 388 -2 1026 164 12 92 chr6 152011754 152011786 -37267768 + MER45R DNA AcHobo 1441 1474 -107 2337 82 7 0 chr6 152011786 152012080 -37267474 - AluSp SINE Alu -17 296 1 1026 164 12 92 chr6 152012080 152012204 -37267350 + MER45R DNA AcHobo 1474 1572 -9 1747 119 52 15 chr6 152012865 152013178 -37266376 + AluSx SINE Alu 32 354 0 295 353 70 19 chr6 152013716 152013872 -37265682 - L2 LINE L2 -3 3269 3106 291 311 85 33 chr6 152013905 152014117 -37265437 - L2 LINE L2 -674 2640 2418 21 36 0 0 chr6 152015039 152015067 -37264487 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 152016570 152016591 -37262963 + AT_rich Low_complexity Low_complexity 1 21 0 243 221 0 0 chr6 152017117 152017203 -37262351 + (TA)n Simple_repeat Simple_repeat 1 86 0 314 309 79 12 chr6 152017268 152017433 -37262121 - L1ME LINE L1 -303 5818 5643 530 335 35 8 chr6 152018124 152018378 -37261176 + L2 LINE L2 2712 2972 -342 1080 197 35 41 chr6 152018389 152018679 -37260875 - L1ME LINE L1 -1038 5108 4821 281 286 0 14 chr6 152018717 152018787 -37260767 - L2 LINE L2 -3 3310 3242 2800 76 38 0 chr6 152019064 152019406 -37260148 - THE1A LTR MaLR 0 355 1 2240 101 0 3 chr6 152019537 152019834 -37259720 + AluSg SINE Alu 1 296 -14 777 312 178 5 chr6 152019873 152020299 -37259255 - L3 LINE CR1 -17 1560 1061 1680 147 7 56 chr6 152020341 152020647 -37258907 - AluJb SINE Alu -21 291 1 451 284 0 17 chr6 152021745 152021910 -37257644 - L1ME3A LINE L1 -208 5962 5806 830 262 69 4 chr6 152022013 152022246 -37257308 - MIR SINE MIR -13 249 2 2008 131 0 0 chr6 152023361 152023675 -37255879 - AluSx SINE Alu 0 314 1 379 242 139 47 chr6 152023795 152023903 -37255651 + L1ME4a LINE L1 5864 5961 -160 987 194 104 20 chr6 152023903 152024104 -37255450 - MER20 DNA MER1_type 0 219 2 379 242 139 47 chr6 152024104 152024210 -37255344 + L1ME4a LINE L1 5961 6098 -23 1192 186 112 53 chr6 152024867 152025190 -37254364 + MER2 DNA MER2_type 2 343 -1 532 243 57 0 chr6 152025737 152025877 -37253677 - MIR SINE MIR -1 261 114 296 253 25 13 chr6 152026281 152026360 -37253194 - MER116 DNA Mariner 0 80 1 2152 133 0 25 chr6 152030114 152030430 -37249124 - AluSx SINE Alu -4 308 1 203 313 30 0 chr6 152030811 152030878 -37248676 + MIR3 SINE MIR 93 161 -47 1936 167 20 84 chr6 152031511 152031597 -37247957 + MLT2D LTR ERVL 1 91 -323 183 42 0 0 chr6 152031597 152031621 -37247933 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1936 167 20 84 chr6 152031621 152031976 -37247578 + MLT2D LTR ERVL 91 414 0 2127 137 0 3 chr6 152032671 152032978 -37246576 - AluJb SINE Alu -6 306 1 1936 147 24 0 chr6 152033926 152034218 -37245336 - AluJo SINE Alu -12 300 2 189 0 0 0 chr6 152034820 152034841 -37244713 + (T)n Simple_repeat Simple_repeat 1 21 0 2457 94 0 0 chr6 152035549 152035858 -37243696 - AluSg SINE Alu -1 309 1 1237 232 45 30 chr6 152036153 152036489 -37243065 - MER58B DNA MER1_type 0 341 1 287 252 25 92 chr6 152036842 152036909 -37242645 - MIR3 SINE MIR -17 191 121 807 162 8 0 chr6 152036909 152037026 -37242528 + FLAM_C SINE Alu 1 118 -15 201 74 0 0 chr6 152037026 152037053 -37242501 + (CAAT)n Simple_repeat Simple_repeat 1 27 0 287 252 25 92 chr6 152037053 152037103 -37242451 - MIR3 SINE MIR -85 123 81 458 327 134 52 chr6 152038121 152038742 -37240812 - L2 LINE L2 -655 2659 1988 396 214 0 101 chr6 152038917 152039076 -37240478 + MER112 DNA MER1_type 5 147 -113 237 119 0 0 chr6 152039076 152039118 -37240436 + (CATTC)n Simple_repeat Simple_repeat 3 44 0 689 250 6 12 chr6 152039399 152039572 -37239982 - MIR SINE MIR -56 206 36 1360 259 146 23 chr6 152040197 152040841 -37238713 - HAL1b LINE L1 0 1348 626 249 219 82 0 chr6 152041058 152041131 -37238423 - HAL1b LINE L1 -991 357 279 261 0 0 0 chr6 152041603 152041632 -37237922 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1542 198 4 0 chr6 152041643 152041911 -37237643 - AluJb SINE Alu -43 269 1 702 242 124 48 chr6 152043117 152043574 -37235980 + MLT1H1 LTR MaLR 1 555 0 21 0 0 0 chr6 152043935 152043956 -37235598 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 152044395 152044429 -37235125 + AT_rich Low_complexity Low_complexity 1 34 0 357 24 0 0 chr6 152044462 152044504 -37235050 + (TG)n Simple_repeat Simple_repeat 2 43 0 2206 122 0 7 chr6 152045079 152045383 -37234171 - AluSx SINE Alu -10 302 1 1906 217 81 60 chr6 152045867 152046398 -37233156 + MLT1F LTR MaLR 1 542 0 1790 118 40 51 chr6 152047337 152047633 -37231921 + AluSx SINE Alu 1 293 -19 23 0 0 0 chr6 152047675 152047698 -37231856 + AT_rich Low_complexity Low_complexity 1 23 0 941 224 18 23 chr6 152047763 152047992 -37231562 - MIR SINE MIR 0 262 35 321 273 149 0 chr6 152048506 152048540 -37231014 - L2 LINE L2 0 3272 3244 1834 159 100 85 chr6 152048540 152048998 -37230556 + MLT1C LTR MaLR 3 467 0 321 273 149 0 chr6 152048998 152049084 -37230470 - L2 LINE L2 -28 3244 3134 357 326 98 49 chr6 152049190 152049631 -37229923 - L2 LINE L2 -303 2969 2499 2031 140 0 0 chr6 152049768 152050075 -37229479 + AluSx SINE Alu 3 309 0 2065 142 23 31 chr6 152051108 152051461 -37228093 + MLT1A1 LTR MaLR 12 361 -4 2291 84 3 3 chr6 152052839 152053136 -37226418 - AluSq SINE Alu -16 297 1 731 258 61 4 chr6 152053417 152053657 -37225897 + MIR SINE MIR 7 252 -10 311 278 87 0 chr6 152053686 152053801 -37225753 - MIR SINE MIR -62 146 22 268 210 16 153 chr6 152053994 152054090 -37225464 - L2 LINE L2 -4 3309 3232 2357 99 7 0 chr6 152054090 152054393 -37225161 + AluSx SINE Alu 1 305 -7 268 210 16 153 chr6 152054393 152054420 -37225134 - L2 LINE L2 -81 3232 3203 225 271 0 0 chr6 152054505 152054553 -37225001 + MARNA DNA Mariner 196 243 -343 650 284 125 34 chr6 152054680 152055127 -37224427 + MARNA DNA Mariner 80 567 -19 1863 164 4 0 chr6 152055180 152055485 -37224069 + AluSx SINE Alu 1 306 0 2091 140 0 16 chr6 152056025 152056340 -37223214 - AluJo SINE Alu -2 310 1 1575 154 122 13 chr6 152057337 152057649 -37221905 + MER7A DNA MER2_type 3 346 0 2195 123 13 7 chr6 152057727 152058037 -37221517 + AluSx SINE Alu 1 312 0 346 307 107 13 chr6 152058334 152058484 -37221070 - MIR3 SINE MIR -34 174 11 1429 217 113 24 chr6 152058973 152059294 -37220260 - MLT1C LTR MaLR 0 467 97 2872 116 2 70 chr6 152059294 152059751 -37219803 + MSTA LTR MaLR 3 428 0 1429 217 113 24 chr6 152059751 152059853 -37219701 - MLT1C LTR MaLR -370 97 6 269 26 26 0 chr6 152060339 152060377 -37219177 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 2667 70 16 47 chr6 152060377 152060613 -37218941 - L1PA10 LINE L1 -21 6147 5926 2387 72 0 16 chr6 152060613 152060918 -37218636 + AluY SINE Alu 1 300 -11 2667 70 16 47 chr6 152060918 152061068 -37218486 - L1PA10 LINE L1 -242 5926 5773 27 29 0 0 chr6 152061078 152061112 -37218442 + AT_rich Low_complexity Low_complexity 1 34 0 198 280 20 0 chr6 152061305 152061355 -37218199 + L2 LINE L2 3004 3054 -218 2306 167 31 70 chr6 152062271 152062755 -37216799 + MLT1C LTR MaLR 1 465 -2 582 281 99 48 chr6 152063719 152064071 -37215483 + L3 LINE CR1 1197 1566 -11 1732 141 72 10 chr6 152064160 152064451 -37215103 - AluJo SINE Alu -3 309 1 388 183 8 108 chr6 152064992 152065112 -37214442 - L1MC4a LINE L1 -1643 6165 6058 292 203 14 0 chr6 152065490 152065559 -37213995 + L1MC4a LINE L1 5945 6014 -1794 6451 223 39 48 chr6 152065675 152067445 -37212109 + L1MC4a LINE L1 6055 7808 0 1755 60 4 39 chr6 152067759 152067993 -37211561 - L1PA7 LINE L1 0 6154 5929 255 301 196 14 chr6 152068125 152068334 -37211220 - L2 LINE L2 -356 2958 2712 1295 141 82 86 chr6 152069057 152069361 -37210193 - AluJo SINE Alu -9 303 1 21 57 0 0 chr6 152069489 152069524 -37210030 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr6 152069738 152069763 -37209791 + AT_rich Low_complexity Low_complexity 1 25 0 207 167 0 0 chr6 152070617 152070659 -37208895 + (CAG)n Simple_repeat Simple_repeat 1 42 0 4671 112 38 38 chr6 152071197 152071728 -37207826 - Tigger3(Golem) DNA MER2_type 0 3028 2495 1968 132 3 7 chr6 152071728 152072032 -37207522 - AluSx SINE Alu -9 303 1 4671 112 38 38 chr6 152072032 152072301 -37207253 - Tigger3(Golem) DNA MER2_type -532 2496 2228 537 169 0 11 chr6 152072293 152072382 -37207172 - Tigger3(Golem) DNA MER2_type -2930 99 12 * 958 243 174 7 chr6 152072985 152073532 -37206022 + LTR50 LTR ERVL 56 792 -3 333 306 135 31 chr6 152074614 152074836 -37204718 - MIR SINE MIR 0 262 18 352 196 78 0 chr6 152074866 152074968 -37204586 - L1M4 LINE L1 -1108 5038 4929 310 273 144 0 chr6 152075226 152075358 -37204196 + LTR68 LTR ERV1 490 640 -100 1773 232 59 13 chr6 152075438 152076023 -37203531 - L1ME LINE L1 -366 5796 4742 * 3751 212 34 60 chr6 152076006 152076196 -37203358 - L1MC3 LINE L1 -6 7779 7586 1686 157 4 11 chr6 152076196 152076476 -37203078 - AluSx SINE Alu 0 312 35 3751 212 34 60 chr6 152076476 152077360 -37202194 - L1MC3 LINE L1 -199 7586 6732 309 26 0 0 chr6 152077395 152077433 -37202121 + (TG)n Simple_repeat Simple_repeat 1 38 0 228 67 0 0 chr6 152077435 152077465 -37202089 + (GA)n Simple_repeat Simple_repeat 2 31 0 1305 292 67 2 chr6 152077846 152078264 -37201290 + LTR16A LTR ERVL 1 445 -5 260 355 67 22 chr6 152078376 152078509 -37201045 + L2 LINE L2 2088 2213 -1101 1633 138 7 36 chr6 152078509 152078784 -37200770 - AluJo SINE Alu -45 267 1 260 355 67 22 chr6 152078784 152079003 -37200551 + L2 LINE L2 2213 2504 -810 345 309 7 88 chr6 152079167 152079220 -37200334 + L2 LINE L2 3147 3203 -69 2082 129 0 7 chr6 152079220 152079515 -37200039 - AluSq SINE Alu -20 293 1 345 309 7 88 chr6 152079515 152079597 -37199957 + L2 LINE L2 3203 3271 -1 270 264 16 25 chr6 152080163 152080284 -37199270 + L1ME3 LINE L1 4544 4663 -1483 7509 200 33 32 chr6 152080300 152082943 -37196611 + L1MB7 LINE L1 3523 6170 -14 1512 281 169 23 chr6 152082981 152084035 -37195519 + L1M4 LINE L1 3787 5060 -1086 2813 162 19 25 chr6 152084035 152084505 -37195049 + MLT1C LTR MaLR 1 467 0 1512 281 169 23 chr6 152084505 152084720 -37194834 + L1M4 LINE L1 5060 5242 -904 294 250 21 62 chr6 152085317 152085358 -37194196 + L1ME3 LINE L1 4665 4706 -1440 1590 140 4 0 chr6 152085358 152085594 -37193960 + AluSg/x SINE Alu 76 312 0 294 250 21 62 chr6 152085594 152085648 -37193906 + L1ME3 LINE L1 4706 4756 -1390 * 866 233 95 21 chr6 152085636 152086045 -37193509 + L1ME3 LINE L1 5119 5565 -597 658 243 7 0 chr6 152086068 152086204 -37193350 + MER45B DNA AcHobo 3 139 -901 2832 73 96 0 chr6 152086254 152086651 -37192903 - LTR7 LTR ERV1 -15 435 1 2296 109 59 13 chr6 152086651 152087026 -37192528 - HERVH LTR ERV1 0 7713 7322 1466 119 0 26 chr6 152087024 152087062 -37192492 - HERVH LTR ERV1 -1894 5819 5782 * 2880 16 9 0 chr6 152087062 152087377 -37192177 + AluYb8 SINE Alu 1 318 0 1466 119 0 26 chr6 152087377 152087564 -37191990 - HERVH LTR ERV1 -1931 5782 5600 32228 102 43 33 chr6 152087565 152092662 -37186892 - HERVH LTR ERV1 -2564 5149 1 2888 68 95 7 chr6 152092664 152093076 -37186478 - LTR7 LTR ERV1 -2 448 1 * 3878 198 66 22 chr6 152093076 152093919 -37185635 + MER45B DNA AcHobo 159 1038 -2 1695 239 61 21 chr6 152093923 152094434 -37185120 + L1ME3 LINE L1 5617 6147 -15 649 252 13 7 chr6 152094498 152094653 -37184901 + MER45B DNA AcHobo 457 612 -428 207 139 0 0 chr6 152094747 152094783 -37184771 + (TG)n Simple_repeat Simple_repeat 2 37 0 1799 160 0 33 chr6 152094997 152095297 -37184257 - AluJb SINE Alu -22 290 1 419 350 66 0 chr6 152095491 152095688 -37183866 + L2 LINE L2 2940 3149 -164 33235 102 11 61 chr6 152095796 152102265 -37177289 + L1PA7 LINE L1 13 6153 -1 270 191 0 0 chr6 152102284 152102331 -37177223 + L2 LINE L2 3265 3311 -2 1703 174 11 3 chr6 152103439 152103721 -37175833 + AluJb SINE Alu 1 284 -28 30 27 0 0 chr6 152103721 152103758 -37175796 + AT_rich Low_complexity Low_complexity 1 37 0 544 236 8 24 chr6 152103765 152103892 -37175662 - L2 LINE L2 0 3313 3189 609 317 75 35 chr6 152104041 152104480 -37175074 + L2 LINE L2 2614 3077 -195 2872 89 0 5 chr6 152104735 152105107 -37174447 - L1PB1 LINE L1 0 6151 5782 919 102 7 54 chr6 152105107 152105402 -37174152 + (TA)n Simple_repeat Simple_repeat 1 281 0 4021 103 14 1 chr6 152105402 152106144 -37173410 - L1PB1 LINE L1 -370 5781 5028 941 271 73 27 chr6 152106164 152106574 -37172980 - LTR16A LTR ERVL -7 443 15 2086 152 15 12 chr6 152106670 152107012 -37172542 - MER61A LTR ERV1 0 343 1 21 0 0 0 chr6 152107546 152107567 -37171987 + AT_rich Low_complexity Low_complexity 1 21 0 373 309 42 24 chr6 152108094 152108259 -37171295 - MIR SINE MIR -82 180 13 461 218 60 23 chr6 152109053 152109186 -37170368 - L2 LINE L2 -1 3271 3134 505 129 65 8 chr6 152109898 152110022 -37169532 - Charlie5 DNA MER1_type -123 2489 2359 438 242 73 0 chr6 152110173 152110297 -37169257 - FLAM_A SINE Alu -4 138 6 393 229 37 0 chr6 152110310 152110419 -37169135 + MER103 DNA DNA 54 166 0 206 274 0 0 chr6 152112262 152112313 -37167241 - L2 LINE L2 -2 3311 3261 610 223 169 0 chr6 152112770 152112954 -37166600 + MER58C DNA MER1_type 1 215 0 663 287 22 0 chr6 152113176 152113357 -37166197 - MER63A DNA MER1_type -24 186 2 301 196 0 131 chr6 152113523 152113630 -37165924 + MIR SINE MIR 131 223 -39 254 318 62 38 chr6 152113705 152113925 -37165629 + MIR SINE MIR 11 232 -30 1928 158 0 19 chr6 152114220 152114537 -37165017 + AluJb SINE Alu 1 311 -1 23 78 0 0 chr6 152114575 152114626 -37164928 + AT_rich Low_complexity Low_complexity 1 51 0 368 241 0 0 chr6 152114896 152114979 -37164575 - MER5A DNA MER1_type -97 92 10 2122 173 6 6 chr6 152116088 152116453 -37163101 + MLT1A1 LTR MaLR 1 365 0 2386 237 26 47 chr6 152116727 152117536 -37162018 + L1ME1 LINE L1 5351 6142 -24 2480 135 31 26 chr6 152117542 152117965 -37161589 + MSTB LTR MaLR 2 426 0 199 350 0 0 chr6 152118360 152118440 -37161114 + MIR SINE MIR 20 99 -163 2189 189 9 20 chr6 152118449 152118686 -37160868 - MLT1C LTR MaLR -9 458 227 2102 118 0 0 chr6 152118686 152118966 -37160588 - AluSx SINE Alu -32 280 1 2189 189 9 20 chr6 152118966 152119184 -37160370 - MLT1C LTR MaLR -240 227 8 265 323 0 0 chr6 152119207 152119272 -37160282 + MIR SINE MIR 119 183 -79 2520 159 21 2 chr6 152119626 152120046 -37159508 - MSTA LTR MaLR 0 428 1 308 268 190 14 chr6 152120106 152120248 -37159306 + MIR SINE MIR 86 252 -10 189 310 190 0 chr6 152120907 152121007 -37158547 + MIR SINE MIR 92 210 -52 226 273 132 58 chr6 152123635 152123756 -37155798 + MIR SINE MIR 63 192 -70 1750 145 35 24 chr6 152123942 152124231 -37155323 - AluJo SINE Alu -20 292 1 2512 74 0 3 chr6 152124241 152124551 -37155003 - AluSx SINE Alu -3 309 1 494 296 95 39 chr6 152124698 152125082 -37154472 - L1MC/D LINE L1 -777 5369 5051 2361 65 10 26 chr6 152125082 152125391 -37154163 - AluY SINE Alu -7 304 1 494 296 95 39 chr6 152125391 152125490 -37154064 - L1MC/D LINE L1 -1095 5051 4959 2099 148 0 0 chr6 152126508 152126806 -37152748 + AluSx SINE Alu 1 298 -14 247 307 57 11 chr6 152127311 152127399 -37152155 + MIR SINE MIR 30 121 -87 251 390 11 11 chr6 152127628 152127915 -37151639 - MER52-int LTR ERV1 -3347 3744 3458 227 337 0 11 chr6 152128456 152128548 -37151006 - MER5A DNA MER1_type -63 126 36 * 288 276 11 11 chr6 152128478 152128565 -37150989 + MER5A DNA MER1_type 96 182 -7 710 220 104 12 chr6 152128619 152128792 -37150762 + MER5A DNA MER1_type 1 189 0 249 258 21 11 chr6 152129416 152129509 -37150045 + MER113 DNA MER1_type? 1 94 -427 1202 143 37 55 chr6 152129532 152129805 -37149749 - L1MC3 LINE L1 -25 7760 7493 744 229 6 11 chr6 152129818 152129993 -37149561 + LTR40b LTR ERVL 287 460 -2 27 49 0 0 chr6 152130174 152130215 -37149339 + AT_rich Low_complexity Low_complexity 1 41 0 240 291 101 0 chr6 152130535 152130614 -37148940 + L2 LINE L2 3225 3311 -2 233 321 73 36 chr6 152130634 152130771 -37148783 - L2 LINE L2 -601 2713 2572 480 339 5 0 chr6 152130774 152130963 -37148591 + ERVL LTR ERVL 3294 3483 -2281 393 272 106 27 chr6 152130994 152131368 -37148186 + ERVL LTR ERVL 4061 4537 -1227 269 248 122 26 chr6 152132071 152132254 -37147300 - MLT1J LTR MaLR 0 511 250 260 351 9 0 chr6 152132317 152132428 -37147126 - MLT1J LTR MaLR -313 198 87 271 244 107 3 chr6 152132478 152132634 -37146920 - L1MC/D LINE L1 -334 5787 5673 313 297 130 5 chr6 152132636 152132828 -37146726 - L1MC/D LINE L1 -586 5580 5382 274 173 27 13 chr6 152132846 152132921 -37146633 + CT-rich Low_complexity Low_complexity 1 76 0 2057 119 7 3 chr6 152132921 152133215 -37146339 - AluSq SINE Alu -16 297 3 684 67 0 0 chr6 152133215 152133305 -37146249 + (TTCC)n Simple_repeat Simple_repeat 2 91 0 221 0 0 33 chr6 152133307 152133337 -37146217 + (TC)n Simple_repeat Simple_repeat 2 30 0 932 214 78 10 chr6 152133479 152133685 -37145869 + MER58A DNA MER1_type 5 224 0 3690 103 0 4 chr6 152134299 152134812 -37144742 - MER9 LTR ERVK 0 511 1 2653 168 53 34 chr6 152135745 152136211 -37143343 + MLT2B2 LTR ERVL 1 479 -36 604 36 24 0 chr6 152136211 152136294 -37143260 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 2653 168 53 34 chr6 152136294 152136332 -37143222 + MLT2B2 LTR ERVL 479 515 0 2260 80 35 3 chr6 152136338 152136627 -37142927 - AluY SINE Alu -13 298 1 2760 155 23 5 chr6 152136821 152137468 -37142086 + L1M3 LINE L1 5107 5764 -419 888 235 212 6 chr6 152137560 152137871 -37141683 - MLT1F1 LTR MaLR -5 562 188 1242 244 8 0 chr6 152137915 152138177 -37141377 + Tigger7 DNA MER2_type 1 264 -2223 455 180 0 70 chr6 152138177 152138277 -37141277 + Tigger7 DNA MER2_type 2388 2480 -7 612 192 103 0 chr6 152138296 152138442 -37141112 - MLT1F1 LTR MaLR -381 161 1 390 198 64 57 chr6 152138690 152138847 -37140707 - Zaphod DNA AcHobo -1993 2038 1881 1922 213 106 97 chr6 152138901 152139150 -37140404 - Zaphod DNA AcHobo -2688 1343 1098 1831 53 0 20 chr6 152139150 152139396 -37140158 - L1PA10 LINE L1 0 6168 5928 1922 213 106 97 chr6 152139396 152140339 -37139215 - Zaphod DNA AcHobo -2933 1098 141 28 0 0 0 chr6 152140540 152140568 -37138986 + AT_rich Low_complexity Low_complexity 1 28 0 2131 115 0 7 chr6 152140576 152140872 -37138682 - AluSx SINE Alu -18 294 1 52 58 0 0 chr6 152141987 152142074 -37137480 + AT_rich Low_complexity Low_complexity 1 87 0 2409 80 3 0 chr6 152142529 152142829 -37136725 + AluSx SINE Alu 1 301 -11 757 138 54 8 chr6 152142829 152142959 -37136595 + AluSg/x SINE Alu 134 269 -43 214 140 40 40 chr6 152143070 152143170 -37136384 + (TG)n Simple_repeat Simple_repeat 1 100 0 328 116 69 29 chr6 152143181 152143354 -37136200 + (TG)n Simple_repeat Simple_repeat 1 180 0 777 290 66 7 chr6 152144037 152144309 -37135245 - L2 LINE L2 -745 2569 2282 476 299 35 26 chr6 152144321 152144750 -37134804 - ERVL LTR ERVL -977 4508 4021 447 346 10 0 chr6 152144781 152144989 -37134565 - ERVL LTR ERVL -2281 3483 3274 184 365 59 0 chr6 152145024 152145109 -37134445 + L2 LINE L2 2624 2713 -601 256 313 75 0 chr6 152145148 152145228 -37134326 - L2 LINE L2 -3 3310 3225 841 204 28 168 chr6 152145261 152145934 -37133620 + LTR4 LTR ERV1 16 594 -2 23 54 0 0 chr6 152145991 152146028 -37133526 + AT_rich Low_complexity Low_complexity 1 37 0 218 194 30 15 chr6 152146028 152146095 -37133459 + (TA)n Simple_repeat Simple_repeat 1 68 0 562 302 80 22 chr6 152146180 152146860 -37132694 - ERVL LTR ERVL -2497 3157 2393 323 206 0 22 chr6 152147149 152147241 -37132313 - LTR67 LTR ERVL 0 557 468 310 178 102 59 chr6 152147272 152147390 -37132164 + LTR37B LTR ERV1 346 468 0 210 71 0 0 chr6 152147568 152147596 -37131958 + (TTTTTG)n Simple_repeat Simple_repeat 5 32 0 225 0 0 0 chr6 152147870 152147895 -37131659 + (CA)n Simple_repeat Simple_repeat 2 26 0 850 193 6 6 chr6 152148531 152148692 -37130862 - FRAM SINE Alu -4 172 12 23 54 0 0 chr6 152149031 152149068 -37130486 + AT_rich Low_complexity Low_complexity 1 37 0 2413 98 0 0 chr6 152149723 152150029 -37129525 + AluSg SINE Alu 1 306 -4 609 238 50 67 chr6 152150443 152150683 -37128871 + MER31-int LTR ERV1 3818 4053 -883 252 177 65 0 chr6 152150919 152150981 -37128573 + LTR37B LTR ERV1 3 68 -400 1636 204 11 11 chr6 152151029 152151381 -37128173 - MLT1A1 LTR MaLR -4 361 10 481 222 141 11 chr6 152151484 152151669 -37127885 + LTR37B LTR ERV1 205 413 -55 1934 252 47 35 chr6 152151698 152152355 -37127199 + L1ME3 LINE L1 5431 6099 -63 2248 116 0 3 chr6 152152355 152152665 -37126889 - AluSg1 SINE Alu 0 309 1 1934 252 47 35 chr6 152152665 152152724 -37126830 + L1ME3 LINE L1 6099 6156 -6 547 289 78 67 chr6 152152724 152153097 -37126457 - LTR67 LTR ERVL -72 485 109 7027 154 13 7 chr6 152153513 152155856 -37123698 - L1PB1 LINE L1 -1 6150 3797 236 77 26 0 chr6 152156055 152156094 -37123460 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 351 0 0 0 chr6 152156171 152156210 -37123344 + (TG)n Simple_repeat Simple_repeat 1 39 0 224 200 0 0 chr6 152156210 152156250 -37123304 + GA-rich Low_complexity Low_complexity 2 41 0 315 194 0 0 chr6 152156558 152156620 -37122934 + L1 LINE L1 3814 3875 -2271 651 289 55 28 chr6 152157058 152157349 -37122205 - MLT1K LTR MaLR -2 586 288 13369 211 57 26 chr6 152158590 152165835 -37113719 + L1MA9 LINE L1 1 7189 -144 1967 173 20 86 chr6 152165835 152166275 -37113279 - MSTB LTR MaLR 0 426 16 327 216 78 43 chr6 152166281 152166397 -37113157 + L1MA9 LINE L1 7184 7303 -30 264 204 19 0 chr6 152166482 152166536 -37113018 + Tigger5 DNA MER2_type 1 55 -2268 * 398 200 14 0 chr6 152166506 152166576 -37112978 + Tigger5 DNA MER2_type 2251 2321 -2 2333 97 3 0 chr6 152166609 152166909 -37112645 - AluSc SINE Alu -8 301 1 2026 175 47 28 chr6 152167809 152168347 -37111207 - MLT2A2 LTR ERVL 0 554 1 1784 249 95 24 chr6 152168778 152169617 -37109937 - L2 LINE L2 0 3313 2416 34 42 0 0 chr6 152171031 152171079 -37108475 + AT_rich Low_complexity Low_complexity 1 48 0 2059 148 0 0 chr6 152171989 152172286 -37107268 - AluSx SINE Alu -15 297 1 1804 166 0 10 chr6 152172665 152172960 -37106594 + AluJb SINE Alu 1 292 -20 1667 147 13 43 chr6 152173023 152173323 -37106231 + AluJo SINE Alu 1 291 -21 369 0 0 0 chr6 152173328 152173369 -37106185 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 690 174 8 8 chr6 152173930 152174051 -37105503 + FRAM SINE Alu 50 170 -6 776 192 25 0 chr6 152174208 152174328 -37105226 - FLAM_A SINE Alu -9 124 2 775 282 47 55 chr6 152174329 152174691 -37104863 - L1MEd LINE L1 -5740 379 21 781 327 160 35 chr6 152174944 152175855 -37103699 + L2 LINE L2 1947 2971 -343 527 141 0 13 chr6 152175855 152175933 -37103621 - AluJ/FLAM SINE Alu -234 78 2 300 120 0 0 chr6 152176410 152176460 -37103094 + (T)n Simple_repeat Simple_repeat 1 50 0 3439 184 51 12 chr6 152177040 152178020 -37101534 + L1MB8 LINE L1 4656 5675 -503 845 194 0 7 chr6 152178025 152178180 -37101374 + FRAM SINE Alu 6 159 -17 2498 159 55 27 chr6 152178180 152178694 -37100860 + L1MB8 LINE L1 5651 6178 0 413 347 97 0 chr6 152178718 152178894 -37100660 + MERVL LTR ERVL 4072 4264 -1221 774 314 50 28 chr6 152179097 152179521 -37100033 + MERVL LTR ERVL 4460 4892 -872 320 288 29 71 chr6 152179814 152179984 -37099570 + MERVL LTR ERVL 5273 5435 -329 2122 115 0 0 chr6 152180287 152180566 -37098988 + AluSx SINE Alu 1 279 -33 273 29 0 0 chr6 152180566 152180600 -37098954 + (CA)n Simple_repeat Simple_repeat 1 34 0 302 330 49 35 chr6 152180616 152180819 -37098735 + MIR SINE MIR 22 227 -35 1997 159 24 89 chr6 152181236 152181694 -37097860 - MSTC LTR MaLR 0 428 1 28 0 0 0 chr6 152182402 152182430 -37097124 + AT_rich Low_complexity Low_complexity 1 28 0 348 188 106 24 chr6 152182601 152182643 -37096911 - MER69 DNA AcHobo 0 2526 2489 2342 155 61 38 chr6 152182643 152183088 -37096466 - MSTB2 LTR MaLR -2 455 1 348 188 106 24 chr6 152183088 152183130 -37096424 - MER69 DNA AcHobo -37 2489 2435 278 188 0 0 chr6 152183139 152183187 -37096367 - MER69 DNA AcHobo -1177 49 2 209 244 0 0 chr6 152183993 152184038 -37095516 - L2 LINE L2 -3 3310 3266 280 247 41 41 chr6 152184559 152184632 -37094922 + MER5A DNA MER1_type 111 183 -6 2378 68 3 7 chr6 152185283 152185577 -37093977 - AluSq SINE Alu -20 293 1 511 300 65 5 chr6 152185587 152185787 -37093767 + L2 LINE L2 2817 3028 -285 442 291 89 30 chr6 152186239 152186442 -37093112 - MIR SINE MIR -32 230 16 610 299 54 0 chr6 152186581 152186765 -37092789 - MIR SINE MIR -10 252 59 753 263 122 0 chr6 152187081 152187286 -37092268 - MIR SINE MIR -32 230 1 360 148 0 0 chr6 152187325 152187386 -37092168 + (GA)n Simple_repeat Simple_repeat 2 62 0 1274 156 10 0 chr6 152188643 152188835 -37090719 - LTR47A LTR ERVL 0 452 259 707 226 118 41 chr6 152188926 152189322 -37090232 + LTR30 LTR ERV1 105 595 0 6321 286 37 49 chr6 152189322 152191640 -37087914 + HERV3 LTR ERV1 1 2289 -6137 684 219 19 19 chr6 152191632 152191787 -37087767 + HERV3 LTR ERV1 2905 3059 -5676 * 13785 267 32 35 chr6 152191783 152196208 -37083346 + HERV15 LTR ERV1 4324 8735 0 708 238 114 38 chr6 152196296 152196680 -37082874 + LTR30 LTR ERV1 105 493 0 * 1367 164 86 4 chr6 152196680 152196922 -37082632 - LTR47A LTR ERVL -190 262 1 334 339 33 8 chr6 152197101 152197222 -37082332 - L2 LINE L2 -7 3306 3183 435 199 66 29 chr6 152198767 152198903 -37080651 + L1MC5 LINE L1 7642 7782 -179 1894 136 0 14 chr6 152199044 152199357 -37080197 + AluSx SINE Alu 1 309 0 428 303 12 36 chr6 152199472 152199637 -37079917 - MIR SINE MIR -75 187 27 543 235 26 9 chr6 152199743 152199858 -37079696 - L2 LINE L2 -1 3271 3155 26 0 0 0 chr6 152200455 152200481 -37079073 + AT_rich Low_complexity Low_complexity 1 26 0 855 155 0 27 chr6 152200528 152200676 -37078878 - L1PB3 LINE L1 0 6154 6011 1350 278 100 7 chr6 152200762 152201483 -37078071 + L2 LINE L2 2523 3308 -5 385 322 75 29 chr6 152201876 152202221 -37077333 - L1M4 LINE L1 -2694 3452 3092 312 91 0 0 chr6 152202360 152202404 -37077150 + (T)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr6 152202799 152202820 -37076734 + AT_rich Low_complexity Low_complexity 1 21 0 2710 111 11 3 chr6 152203574 152203935 -37075619 + THE1B LTR MaLR 1 364 0 234 214 18 0 chr6 152203935 152203991 -37075563 + MIR SINE MIR 113 169 -93 24 32 0 0 chr6 152204498 152204529 -37075025 + AT_rich Low_complexity Low_complexity 1 31 0 206 227 45 0 chr6 152204535 152204623 -37074931 + (TA)n Simple_repeat Simple_repeat 1 92 0 989 258 141 16 chr6 152204706 152205231 -37074323 - L2 LINE L2 -13 3300 2726 2223 142 9 0 chr6 152205318 152205662 -37073892 + LTR43 LTR ERV1 64 410 -192 1860 128 23 8 chr6 152205666 152205932 -37073622 + AluSx SINE Alu 10 279 -33 2307 134 36 9 chr6 152205973 152206653 -37072901 - MER4B-int LTR ERV1 -27 6731 5992 1084 97 0 7 chr6 152206672 152206817 -37072737 - MER61D LTR ERV1 -244 257 114 13770 167 61 32 chr6 152206858 152210080 -37069474 - MER61D-int LTR ERV1 0 6940 2657 1105 103 0 0 chr6 152210086 152210231 -37069323 - AluSp/q SINE Alu -2 311 167 2526 140 11 10 chr6 152210231 152210705 -37068849 - MER4B-int LTR ERV1 -3644 3556 1213 * 4222 166 20 25 chr6 152210702 152211827 -37067727 - MER4B-int LTR ERV1 -391 4826 3697 408 215 0 0 chr6 152211827 152211906 -37067648 - MADE1 DNA Mariner 0 80 2 4222 166 20 25 chr6 152211906 152211967 -37067587 - MER4B-int LTR ERV1 -1520 3697 695 573 193 0 9 chr6 152212015 152212129 -37067425 - MER4B-int LTR ERV1 -4839 378 266 20842 119 68 40 chr6 152212565 152214592 -37064962 - MER4B-int LTR ERV1 -2363 4395 2426 2274 97 7 0 chr6 152214592 152214882 -37064672 - AluSq SINE Alu -21 292 1 20842 119 68 40 chr6 152214882 152215676 -37063878 - MER4B-int LTR ERV1 -4332 2426 1656 2308 129 86 8 chr6 152215676 152216070 -37063484 - MSTA LTR MaLR 0 428 4 20842 119 68 40 chr6 152216070 152217314 -37062240 - MER4B-int LTR ERV1 -5102 1656 215 1251 229 38 22 chr6 152217389 152217708 -37061846 - MER4B-int LTR ERV1 -4163 2168 1845 327 114 0 114 chr6 152217757 152217845 -37061709 - MER4B-int LTR ERV1 -5770 828 751 2415 107 140 64 chr6 152217910 152218423 -37061131 - MER4B-int LTR ERV1 -6035 563 12 3784 102 20 66 chr6 152218433 152219072 -37060482 - MER4B LTR ERV1 0 610 1 737 144 110 0 chr6 152219072 152219245 -37060309 + MER65A LTR ERV1 254 445 0 2317 95 7 0 chr6 152220054 152220349 -37059205 - AluSc SINE Alu -12 297 1 1069 71 0 0 chr6 152221008 152221135 -37058419 + AluY SINE Alu 1 127 -184 1563 189 11 7 chr6 152221224 152221499 -37058055 + AluJb SINE Alu 21 296 -16 1867 202 66 14 chr6 152221680 152222121 -37057433 + MLT1C LTR MaLR 4 467 0 328 283 50 17 chr6 152222122 152222242 -37057312 + L1ME LINE L1 4944 5067 -1079 255 217 66 26 chr6 152222547 152222623 -37056931 + L1ME LINE L1 5496 5574 -547 3008 63 2 24 chr6 152224831 152225244 -37054310 + MLT2A1 LTR ERVL 1 404 -40 317 83 68 54 chr6 152225248 152225527 -37054027 + (TATAA)n Simple_repeat Simple_repeat 1 283 0 21 36 0 0 chr6 152225527 152225555 -37053999 + AT_rich Low_complexity Low_complexity 1 28 0 306 33 149 9 chr6 152225577 152225634 -37053920 + MLT2A1 LTR ERVL 387 444 0 2347 104 0 0 chr6 152227347 152227655 -37051899 + AluSc SINE Alu 1 308 -1 387 0 0 0 chr6 152228557 152228600 -37050954 + (CA)n Simple_repeat Simple_repeat 2 44 0 227 252 90 32 chr6 152228649 152228804 -37050750 + L1ME4a LINE L1 5930 6093 -28 21 57 0 0 chr6 152228932 152228967 -37050587 + AT_rich Low_complexity Low_complexity 1 35 0 297 301 0 24 chr6 152231003 152231086 -37048468 + L2 LINE L2 3183 3263 -9 1227 145 66 26 chr6 152231727 152231954 -37047600 - MER46A DNA MER2_type 0 236 1 2645 77 8 3 chr6 152233409 152233762 -37045792 + THE1A LTR MaLR 1 355 0 11611 88 15 2 chr6 152233762 152235319 -37044235 + THE1A-int LTR MaLR 1 1578 -2 2696 82 6 6 chr6 152235321 152235676 -37043878 + THE1A LTR MaLR 1 355 0 1264 161 121 0 chr6 152236023 152236247 -37043307 + AluJb SINE Alu 1 251 -61 1060 172 9 69 chr6 152236975 152237208 -37042346 + MER20 DNA MER1_type 1 219 0 639 260 60 19 chr6 152237916 152238181 -37041373 - MLT1-int LTR MaLR -769 602 327 2152 120 0 0 chr6 152238226 152238510 -37041044 - AluSg SINE Alu -26 284 1 401 343 10 39 chr6 152240445 152240649 -37038905 - L3 LINE CR1 -605 972 775 24 53 0 0 chr6 152240922 152240960 -37038594 + AT_rich Low_complexity Low_complexity 1 38 0 508 299 18 0 chr6 152240971 152241135 -37038419 - MIR SINE MIR 0 262 96 267 93 0 0 chr6 152241639 152241682 -37037872 + (CA)n Simple_repeat Simple_repeat 1 43 0 1854 125 40 4 chr6 152241684 152241956 -37037598 - AluJb SINE Alu -30 282 1 393 272 120 19 chr6 152244025 152244183 -37035371 + MIR SINE MIR 7 180 -82 977 175 212 31 chr6 152244625 152244917 -37034637 - MER7A DNA MER2_type 0 346 4 256 353 49 0 chr6 152245695 152245797 -37033757 - MIR3 SINE MIR -21 187 81 307 239 116 39 chr6 152246072 152246227 -37033327 + L2 LINE L2 3062 3228 -85 524 258 123 18 chr6 152246377 152246540 -37033014 - MER5A DNA MER1_type 0 189 10 1061 251 85 42 chr6 152246735 152247145 -37032409 - LTR16A LTR ERVL 0 450 23 459 298 18 133 chr6 152247223 152247476 -37032078 - L2 LINE L2 0 3272 3064 2008 147 0 47 chr6 152247476 152247649 -37031905 - AluJo SINE Alu -6 306 153 1731 147 72 0 chr6 152247649 152247928 -37031626 - AluJb SINE Alu -13 299 1 2008 147 0 47 chr6 152247928 152248073 -37031481 - AluJo SINE Alu -159 153 3 459 298 18 133 chr6 152248073 152248151 -37031403 - L2 LINE L2 -208 3064 2979 185 211 83 150 chr6 152248324 152248457 -37031097 - MER5A DNA MER1_type -62 127 4 28 95 0 0 chr6 152248804 152248888 -37030666 + AT_rich Low_complexity Low_complexity 1 84 0 212 271 157 0 chr6 152249073 152249143 -37030411 + L2 LINE L2 3225 3305 -8 296 289 13 0 chr6 152249652 152249728 -37029826 + MLT1J LTR MaLR 110 186 -325 414 260 85 55 chr6 152249887 152250122 -37029432 + MLT1L LTR MaLR 351 592 -23 234 0 0 0 chr6 152250123 152250149 -37029405 + (T)n Simple_repeat Simple_repeat 1 26 0 2213 121 3 0 chr6 152250520 152250825 -37028729 + AluSg SINE Alu 1 306 -4 306 276 24 53 chr6 152251570 152251740 -37027814 + LTR68 LTR ERV1 1 165 -575 295 216 86 43 chr6 152251916 152252055 -37027499 + LTR68 LTR ERV1 290 434 -306 634 210 52 80 chr6 152252393 152252447 -37027107 + MER39 LTR ERV1 260 314 -393 2256 99 0 3 chr6 152252447 152252739 -37026815 + AluSx SINE Alu 1 291 -21 634 210 52 80 chr6 152252739 152253089 -37026465 + MER39 LTR ERV1 314 707 0 620 284 40 27 chr6 152253395 152253620 -37025934 + MIR SINE MIR 1 228 -34 1759 166 42 0 chr6 152254543 152254826 -37024728 + AluJo SINE Alu 4 298 -14 776 286 41 5 chr6 152254832 152255052 -37024502 + MIR SINE MIR 35 262 0 207 0 0 0 chr6 152256293 152256316 -37023238 + (GA)n Simple_repeat Simple_repeat 2 24 0 259 287 14 49 chr6 152256801 152256944 -37022610 - MLT1K LTR MaLR -370 218 81 1003 179 10 30 chr6 152257072 152257273 -37022281 - MLT2D LTR ERVL -1 413 217 1061 200 25 52 chr6 152258294 152258619 -37020935 + MER33 DNA MER1_type 7 322 -2 299 172 0 3 chr6 152258937 152259003 -37020551 - L1ME3A LINE L1 -245 5924 5857 221 0 35 0 chr6 152259238 152259267 -37020287 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1659 162 7 0 chr6 152259269 152259541 -37020013 - AluJb SINE Alu -37 275 2 199 343 33 61 chr6 152259709 152259890 -37019664 - MIR SINE MIR -26 236 61 436 229 46 27 chr6 152261022 152261269 -37018285 - L1ME3A LINE L1 -17 6153 5869 23 0 0 0 chr6 152261530 152261553 -37018001 + AT_rich Low_complexity Low_complexity 1 23 0 1490 195 7 7 chr6 152261562 152261844 -37017710 - AluJo SINE Alu -24 288 7 315 253 69 17 chr6 152261851 152262025 -37017529 - L1ME3A LINE L1 -262 5859 5677 252 263 25 12 chr6 152262028 152262108 -37017446 + CT-rich Low_complexity Low_complexity 4 84 0 333 269 51 0 chr6 152262109 152262187 -37017367 - L2 LINE L2 -25 3288 3207 2472 74 0 13 chr6 152262210 152262519 -37017035 - AluY SINE Alu -6 305 1 2362 219 44 31 chr6 152262538 152263242 -37016312 - L1ME1 LINE L1 -5 6161 5449 1776 250 199 47 chr6 152263888 152264699 -37014855 + L2 LINE L2 1905 2838 -476 658 232 7 7 chr6 152264699 152264850 -37014704 - MER45A DNA AcHobo 0 178 28 438 333 81 5 chr6 152264868 152265054 -37014500 + L2 LINE L2 2830 3029 -284 1698 136 79 11 chr6 152265301 152265580 -37013974 + AluJb SINE Alu 13 310 -2 567 281 103 25 chr6 152265824 152266027 -37013527 + MIR SINE MIR 21 239 -23 889 184 40 0 chr6 152266273 152266425 -37013129 - AluJo/FRAM SINE Alu -14 298 141 1046 158 48 62 chr6 152266426 152266635 -37012919 - AluJo SINE Alu -106 206 1 2135 108 3 10 chr6 152266646 152266943 -37012611 - AluSx SINE Alu -17 295 1 189 0 0 0 chr6 152267966 152267987 -37011567 + (T)n Simple_repeat Simple_repeat 1 21 0 254 254 232 7 chr6 152268747 152268885 -37010669 + L2 LINE L2 3145 3313 0 228 327 39 45 chr6 152269148 152269304 -37010250 + MIR3 SINE MIR 37 191 -17 199 340 124 20 chr6 152269478 152269631 -37009923 - MIR SINE MIR -89 173 5 248 313 121 42 chr6 152269651 152269817 -37009737 - MIR SINE MIR -4 258 80 299 253 11 0 chr6 152269866 152269953 -37009601 - ERVL LTR ERVL -419 5345 5258 2220 129 3 0 chr6 152269993 152270304 -37009250 - AluSx SINE Alu 0 312 1 255 224 0 0 chr6 152270316 152270374 -37009180 - ERVL LTR ERVL -451 5203 5146 435 308 40 71 chr6 152270449 152270930 -37008624 - MER34 LTR ERV1 -76 466 1 894 124 7 0 chr6 152270933 152271078 -37008476 + MER34B LTR ERV1 375 520 -45 1287 169 15 86 chr6 152271930 152272357 -37007197 - MER1B DNA MER1_type 0 339 1 23 0 0 0 chr6 152272439 152272462 -37007092 + AT_rich Low_complexity Low_complexity 1 23 0 536 278 91 5 chr6 152273426 152273613 -37005941 - MIR SINE MIR -59 203 1 529 275 44 12 chr6 152274254 152274414 -37005140 + MIR SINE MIR 98 262 0 2277 180 0 0 chr6 152274706 152275107 -37004447 - MER57A LTR ERV1 0 403 3 865 176 13 8 chr6 152275221 152275536 -37004018 - MLT1A1 LTR MaLR 0 365 1 249 313 23 15 chr6 152275805 152275936 -37003618 + LTR33 LTR ERVL 11 142 -379 2500 81 0 0 chr6 152276292 152276601 -37002953 + AluY SINE Alu 1 309 -2 231 313 60 0 chr6 152277034 152277168 -37002386 - HAL1 LINE L1 -939 1568 1427 491 244 125 58 chr6 152277260 152277637 -37001917 - L1MEd LINE L1 -4890 1229 828 224 233 0 0 chr6 152277638 152277681 -37001873 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 2120 143 3 20 chr6 152277681 152278031 -37001523 + MER2 DNA MER2_type 1 344 0 313 383 43 25 chr6 152278031 152278193 -37001361 - L1MEd LINE L1 -5507 612 448 358 217 42 33 chr6 152278193 152278313 -37001241 + CT-rich Low_complexity Low_complexity 1 121 0 1418 189 71 57 chr6 152278313 152278751 -37000803 + MER31B LTR ERV1 2 445 -21 2148 147 54 7 chr6 152278891 152279298 -37000256 - L1MB1 LINE L1 -204 5985 5560 814 181 24 0 chr6 152279314 152279480 -37000074 - L1MB1 LINE L1 -1336 4810 4641 532 172 13 40 chr6 152279749 152279900 -36999654 - L1MB7 LINE L1 -7 6177 6031 1780 136 13 36 chr6 152280527 152280828 -36998726 - AluSq SINE Alu -19 294 1 1893 147 92 3 chr6 152280974 152281256 -36998298 - MER4C LTR ERV1 -1 464 142 2480 84 37 50 chr6 152281256 152281638 -36997916 - MER51B LTR ERV1 0 377 1 1893 147 92 3 chr6 152281638 152281715 -36997839 - MER4C LTR ERV1 -323 142 73 543 194 19 0 chr6 152281857 152281965 -36997589 + MLT1A1 LTR MaLR 2 111 -254 774 142 19 123 chr6 152281970 152282092 -36997462 + MLT1A1 LTR MaLR 229 324 -41 1946 147 0 16 chr6 152282092 152282398 -36997156 - AluSx SINE Alu -11 301 1 774 142 19 123 chr6 152282398 152282437 -36997117 + MLT1A1 LTR MaLR 324 365 0 269 270 45 11 chr6 152282833 152282922 -36996632 - MER5B DNA MER1_type -4 174 83 275 208 14 42 chr6 152282849 152282921 -36996633 + MER5A DNA MER1_type 32 101 -88 198 0 0 0 chr6 152283403 152283425 -36996129 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 941 193 15 0 chr6 152283507 152283709 -36995845 - MER3 DNA MER1_type 0 209 5 2132 178 44 36 chr6 152284172 152284671 -36994883 + MLT1D LTR MaLR 1 503 -2 399 277 66 24 chr6 152285640 152285806 -36993748 - L2 LINE L2 -184 3088 2916 418 246 98 16 chr6 152286081 152286203 -36993351 + MIR3 SINE MIR 74 205 -3 363 233 114 4 chr6 152286262 152286377 -36993177 + MIR SINE MIR 46 173 -80 2474 69 16 96 chr6 152286914 152287364 -36992190 - MER11A LTR ERVK 0 1266 853 337 120 0 0 chr6 152287355 152287405 -36992149 - MER11A LTR ERVK -636 630 581 * 22 56 0 0 chr6 152288150 152288186 -36991368 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 152289335 152289356 -36990198 + AT_rich Low_complexity Low_complexity 1 21 0 309 285 64 94 chr6 152290434 152290764 -36988790 - MLT1K LTR MaLR -183 405 86 287 352 98 13 chr6 152290993 152291229 -36988325 - MLT1H LTR MaLR -200 349 94 400 312 81 16 chr6 152291326 152291512 -36988042 + L1M4 LINE L1 4590 4787 -1359 236 346 129 0 chr6 152291669 152291770 -36987784 + L2 LINE L2 3200 3313 0 29 90 0 0 chr6 152292312 152292390 -36987164 + AT_rich Low_complexity Low_complexity 1 78 0 189 0 0 0 chr6 152293532 152293553 -36986001 + (A)n Simple_repeat Simple_repeat 1 21 0 2119 110 40 37 chr6 152294505 152294879 -36984675 - THE1C LTR MaLR 0 375 1 318 273 10 10 chr6 152294880 152294979 -36984575 - L3b LINE CR1 -190 1393 1295 915 223 10 5 chr6 152295877 152296070 -36983484 - AluJo SINE Alu -118 194 1 217 386 23 9 chr6 152297182 152297397 -36982157 + L2 LINE L2 1752 1969 -1345 748 232 61 71 chr6 152297399 152297508 -36982046 - L2 LINE L2 -4 3268 3159 2209 103 0 40 chr6 152297508 152297829 -36981725 - AluSq SINE Alu -5 308 1 748 232 61 71 chr6 152297829 152298107 -36981447 - L2 LINE L2 -113 3159 2791 26 30 0 0 chr6 152298954 152298987 -36980567 + AT_rich Low_complexity Low_complexity 1 33 0 2168 121 0 19 chr6 152299262 152299577 -36979977 + AluSg SINE Alu 1 309 -1 327 157 0 0 chr6 152299589 152299640 -36979914 + FRAM/FAM SINE Alu 1 51 -124 * 1756 127 23 58 chr6 152299633 152299756 -36979798 - MER46B DNA MER2_type -2521 210 84 2188 102 85 20 chr6 152299756 152300098 -36979456 + THE1B LTR MaLR 1 364 0 1756 127 23 58 chr6 152300098 152300168 -36979386 - MER46B DNA MER2_type -2647 84 156 1823 165 0 44 chr6 152300168 152300484 -36979070 - AluJb SINE Alu -10 302 1 1756 127 23 58 chr6 152300484 152300635 -36978919 - MER46B DNA MER2_type -2574 157 2 947 264 99 29 chr6 152300924 152301269 -36978285 + MLT1E LTR MaLR 4 372 -221 346 225 11 11 chr6 152301276 152301365 -36978189 + MER34 LTR ERV1 1 89 -453 1269 218 63 23 chr6 152301377 152301818 -36977736 + LTR29 LTR ERV1 137 595 -27 2493 155 112 30 chr6 152301825 152302525 -36977029 + MER4E LTR ERV1 1 779 0 516 174 258 18 chr6 152302561 152302728 -36976826 + MLT1E LTR MaLR 376 582 -11 334 325 96 6 chr6 152303129 152303286 -36976268 + MIR SINE MIR 35 205 -57 2436 142 63 35 chr6 152303510 152304076 -36975478 + MER4B LTR ERV1 1 749 -30 410 278 154 44 chr6 152304235 152304462 -36975092 + MIR SINE MIR 3 254 -8 302 229 107 41 chr6 152305539 152305661 -36973893 + MER39 LTR ERV1 8 137 -570 * 1217 210 74 60 chr6 152305638 152306071 -36973483 + MER39 LTR ERV1 264 702 -5 388 293 27 14 chr6 152306335 152306482 -36973072 + MLT1I LTR MaLR 1 149 -260 257 222 61 20 chr6 152306492 152306591 -36972963 - MER34 LTR ERV1 -5 537 435 1105 228 74 50 chr6 152307281 152307753 -36971801 - MER39 LTR ERV1 0 687 9 3834 147 24 10 chr6 152307795 152308496 -36971058 - MER50 LTR ERV1 -23 711 1 2315 75 3 23 chr6 152308510 152308818 -36970736 - AluY SINE Alu -9 302 1 227 234 0 62 chr6 152309170 152309234 -36970320 - L2 LINE L2 0 3313 3254 961 133 0 32 chr6 152309240 152309398 -36970156 + MER93b LTR ERV1 5 157 -216 243 154 0 0 chr6 152309394 152309433 -36970121 + MER93b LTR ERV1 113 151 -222 * 984 212 87 4 chr6 152309476 152309717 -36969837 + MER93b LTR ERV1 113 373 0 2956 62 5 3 chr6 152309896 152310267 -36969287 + THE1C LTR MaLR 1 372 -3 716 205 68 137 chr6 152310862 152311155 -36968399 + LTR40a LTR ERVL 1 272 -247 833 269 41 51 chr6 152311155 152311567 -36967987 - LTR38 LTR ERV1 0 556 149 738 250 50 17 chr6 152311644 152311884 -36967670 + LTR40a LTR ERVL 272 519 0 3735 91 12 4 chr6 152312176 152312683 -36966871 - MER9 LTR ERVK 0 511 1 271 309 0 0 chr6 152313004 152313072 -36966482 + MIR SINE MIR 1 68 -194 301 119 0 0 chr6 152313074 152313116 -36966438 + 5S rRNA rRNA 1 42 -79 852 211 29 25 chr6 152313116 152313320 -36966234 + MIR SINE MIR 58 262 0 200 111 133 22 chr6 152313580 152313625 -36965929 - L2 LINE L2 0 3272 3223 3055 139 169 10 chr6 152313717 152314327 -36965227 + MER39 LTR ERV1 1 707 0 180 0 0 0 chr6 152314687 152314707 -36964847 + (TG)n Simple_repeat Simple_repeat 2 21 0 372 333 0 10 chr6 152315533 152315635 -36963919 - MIR3 SINE MIR -21 187 87 374 384 18 0 chr6 152315729 152315893 -36963661 - L3b LINE CR1 -124 1459 1293 217 333 40 10 chr6 152316021 152316120 -36963434 + L2 LINE L2 2422 2523 -791 226 232 0 43 chr6 152316256 152316325 -36963229 - MLT1I LTR MaLR -35 374 309 388 320 15 41 chr6 152316400 152316597 -36962957 - MLT1I LTR MaLR -120 289 98 342 327 68 51 chr6 152316784 152317265 -36962289 + L2 LINE L2 2763 3270 -2 243 61 0 0 chr6 152318055 152318088 -36961466 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 602 205 8 8 chr6 152318237 152318399 -36961155 + FLAM_A SINE Alu 1 133 0 310 298 79 18 chr6 152318517 152318631 -36960923 + L2 LINE L2 3138 3258 -14 350 295 16 9 chr6 152319101 152319237 -36960317 + MER34 LTR ERV1 1 108 -434 669 189 35 142 chr6 152319264 152319516 -36960038 + MER39 LTR ERV1 310 518 -189 2213 86 0 0 chr6 152319516 152319819 -36959735 + AluY SINE Alu 3 305 0 669 189 35 142 chr6 152319819 152319909 -36959645 + MER39 LTR ERV1 518 616 -91 753 163 0 0 chr6 152319909 152320032 -36959522 - AluJ SINE Alu -2 310 188 772 177 0 0 chr6 152320034 152320158 -36959396 - AluJ SINE Alu -188 124 1 245 221 58 23 chr6 152320158 152320244 -36959310 + MER34B LTR ERV1 477 565 0 250 322 76 47 chr6 152320244 152320480 -36959074 + L2 LINE L2 2818 3060 -212 243 0 0 0 chr6 152320490 152320517 -36959037 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 852 233 31 14 chr6 152321126 152321349 -36958205 + MIR SINE MIR 33 259 -3 923 211 19 10 chr6 152323683 152323892 -36955662 - MER20 DNA MER1_type -8 211 1 832 158 22 0 chr6 152324195 152324334 -36955220 - AluSx SINE Alu -22 290 149 635 81 12 0 chr6 152324334 152324420 -36955134 - AluSx SINE Alu -225 87 1 192 384 0 23 chr6 152324569 152324655 -36954899 - MIR SINE MIR -116 146 63 270 0 0 0 chr6 152325704 152325734 -36953820 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 24 32 0 0 chr6 152326679 152326710 -36952844 + AT_rich Low_complexity Low_complexity 1 31 0 309 26 0 0 chr6 152327109 152327147 -36952407 + (TG)n Simple_repeat Simple_repeat 2 39 0 293 202 32 0 chr6 152328223 152328317 -36951237 + (TA)n Simple_repeat Simple_repeat 1 97 0 366 257 103 78 chr6 152331020 152331456 -36948098 + MLT1J2 LTR MaLR 4 450 0 24 0 0 0 chr6 152331478 152331502 -36948052 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 152331692 152331721 -36947833 + AT_rich Low_complexity Low_complexity 1 29 0 401 295 35 40 chr6 152332989 152333162 -36946392 + MIR SINE MIR 21 192 -70 247 257 36 45 chr6 152333782 152333908 -36945646 + MIR3 SINE MIR 1 154 -108 327 252 183 35 chr6 152334078 152334193 -36945361 + MIR3 SINE MIR 28 159 -49 431 274 40 24 chr6 152334200 152334324 -36945230 + MER5B DNA MER1_type 1 126 -52 1968 220 195 43 chr6 152334393 152335536 -36944018 - L1MC4 LINE L1 -142 7900 6504 1835 147 10 29 chr6 152336734 152337047 -36942507 - AluSx SINE Alu -5 307 1 2136 104 3 23 chr6 152337114 152337421 -36942133 - AluSp SINE Alu -12 301 1 339 78 0 0 chr6 152340643 152340694 -36938860 + (GA)n Simple_repeat Simple_repeat 1 51 0 250 268 66 71 chr6 152342184 152342382 -36937172 + LTR33 LTR ERVL 21 217 -304 2081 123 92 53 chr6 152343342 152343524 -36936030 - L1MC2 LINE L1 -194 6150 5977 1926 121 61 0 chr6 152343524 152343804 -36935750 - AluSg SINE Alu -13 297 1 2081 123 92 53 chr6 152343804 152344075 -36935479 - L1MC2 LINE L1 -367 5977 5679 24 53 0 0 chr6 152344542 152344580 -36934974 + AT_rich Low_complexity Low_complexity 1 38 0 906 48 0 48 chr6 152344648 152344774 -36934780 + L1PA8 LINE L1 6048 6167 -5 257 300 40 67 chr6 152344989 152345158 -36934396 - MIR SINE MIR -74 188 5 457 324 117 9 chr6 152345670 152345883 -36933671 + MIR SINE MIR 1 236 -26 393 311 124 46 chr6 152345885 152346126 -36933428 - MIR SINE MIR -1 261 2 23 33 0 0 chr6 152346667 152346697 -36932857 + AT_rich Low_complexity Low_complexity 1 30 0 255 61 0 0 chr6 152348556 152348589 -36930965 + (TG)n Simple_repeat Simple_repeat 2 34 0 356 203 14 0 chr6 152355018 152355087 -36924467 - MER2 DNA MER2_type -8 337 268 904 170 0 0 chr6 152355096 152355231 -36924323 + AluSq/x SINE Alu 1 135 -178 1971 177 0 0 chr6 152355231 152355530 -36924024 + AluSx SINE Alu 1 299 -13 1172 160 0 24 chr6 152355574 152355786 -36923768 - MER2 DNA MER2_type -138 207 1 298 188 175 0 chr6 152356173 152356253 -36923301 + MIR SINE MIR 132 225 -37 328 375 144 0 chr6 152356346 152356506 -36923048 - MIR3 SINE MIR -25 183 1 611 290 166 0 chr6 152357706 152357923 -36921631 + MIR SINE MIR 2 254 -8 1575 175 21 18 chr6 152357924 152358209 -36921345 - AluJo SINE Alu -20 292 7 47 0 0 0 chr6 152359374 152359421 -36920133 + GC_rich Low_complexity Low_complexity 1 47 0 385 325 82 88 chr6 152359604 152360482 -36919072 - L1M2 LINE L1 -5594 1255 383 182 192 19 0 chr6 152360682 152360734 -36918820 + CT-rich Low_complexity Low_complexity 3 55 0 309 338 5 16 chr6 152360765 152361005 -36918549 + C-rich Low_complexity Low_complexity 1 237 0 302 220 22 22 chr6 152361153 152361244 -36918310 - AluJ/FLAM SINE Alu -208 94 4 2422 109 3 0 chr6 152361346 152361658 -36917896 + AluSp SINE Alu 1 313 0 1896 182 0 3 chr6 152362364 152362672 -36916882 - AluJb SINE Alu -5 307 1 189 309 106 0 chr6 152365220 152365314 -36914240 + MIR SINE MIR 85 188 -74 26 0 0 0 chr6 152366570 152366596 -36912958 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr6 152366883 152366907 -36912647 + AT_rich Low_complexity Low_complexity 1 24 0 201 220 60 0 chr6 152367415 152367465 -36912089 - MIR SINE MIR -111 151 99 225 291 0 0 chr6 152368949 152369004 -36910550 - MER5A DNA MER1_type -74 115 61 1269 105 0 0 chr6 152369024 152369186 -36910368 + AluSc SINE Alu 1 162 -147 331 268 12 12 chr6 152369870 152369952 -36909602 - L2 LINE L2 -36 3236 3155 2257 112 0 0 chr6 152370201 152370504 -36909050 - AluSx SINE Alu -9 303 1 211 304 120 0 chr6 152370863 152370955 -36908599 + L2 LINE L2 2679 2781 -533 506 259 31 6 chr6 152370964 152371126 -36908428 - MER103 DNA DNA 0 166 1 291 314 59 0 chr6 152371351 152371453 -36908101 - MIR3 SINE MIR -24 184 77 1088 154 89 42 chr6 152371591 152371946 -36907608 - MER33 DNA MER1_type 0 324 1 1129 156 27 54 chr6 152371954 152372178 -36907376 + MER20 DNA MER1_type 1 218 -1 2281 55 41 7 chr6 152372314 152372605 -36906949 + AluY SINE Alu 1 301 -10 202 337 0 0 chr6 152372772 152372858 -36906696 + A-rich Low_complexity Low_complexity 1 86 0 23 68 0 0 chr6 152374954 152374998 -36904556 + AT_rich Low_complexity Low_complexity 1 44 0 277 311 88 7 chr6 152377579 152377727 -36901827 - MER117 DNA MER1_type -37 160 1 251 355 89 6 chr6 152377806 152377975 -36901579 + L3b LINE CR1 1392 1574 -9 223 362 76 19 chr6 152378207 152378417 -36901137 + L2 LINE L2 2958 3179 -134 191 200 86 0 chr6 152378496 152378531 -36901023 + L2 LINE L2 3163 3200 -72 436 220 52 92 chr6 152378554 152378651 -36900903 + MER5B DNA MER1_type 12 111 -67 1582 184 32 62 chr6 152378651 152379053 -36900501 - MLT1B LTR MaLR 0 390 1 436 220 52 92 chr6 152379053 152379104 -36900450 + MER5B DNA MER1_type 111 155 -23 1579 164 56 90 chr6 152379104 152379550 -36900004 - MSTB1 LTR MaLR -1 431 1 436 220 52 92 chr6 152379550 152379573 -36899981 + MER5B DNA MER1_type 155 177 -1 390 281 152 17 chr6 152380200 152380378 -36899176 + MIR SINE MIR 25 226 -36 1588 179 134 8 chr6 152380915 152381273 -36898281 - MER57A LTR ERV1 0 403 1 1446 158 11 8 chr6 152381273 152381538 -36898016 - MER57A-int LTR ERV1 0 7537 7272 743 107 25 8 chr6 152381540 152381661 -36897893 - LTR54B LTR ERV1 -373 125 3 7280 149 16 29 chr6 152381667 152382999 -36896555 - MER57A-int LTR ERV1 -397 7140 5826 6473 167 35 35 chr6 152383322 152385395 -36894159 - MER57A-int LTR ERV1 -1583 4748 1753 779 191 0 102 chr6 152385532 152385757 -36893797 - MER57A-int LTR ERV1 -2884 3447 3246 436 196 23 151 chr6 152385850 152386069 -36893485 - MER57A-int LTR ERV1 -3732 1391 1201 276 182 0 0 chr6 152386240 152386295 -36893259 - MER34C LTR ERV1 -373 212 158 2130 149 6 8 chr6 152386312 152386668 -36892886 + THE1A LTR MaLR 1 355 0 3884 170 35 48 chr6 152386877 152387637 -36891917 - MER57A-int LTR ERV1 -6688 849 100 2494 52 0 3 chr6 152387637 152387942 -36891612 + AluY SINE Alu 1 304 -7 3884 170 35 48 chr6 152387942 152388041 -36891513 - MER57A-int LTR ERV1 -7437 100 1 2221 162 36 0 chr6 152388041 152388430 -36891124 - MER57A LTR ERV1 0 403 1 257 324 41 6 chr6 152388851 152389021 -36890533 + L1MEd LINE L1 926 1101 -5018 267 278 56 8 chr6 152389565 152389691 -36889863 + L1ME LINE L1 5607 5738 -383 2962 197 15 41 chr6 152389716 152391156 -36888398 + L1MA9 LINE L1 4654 5992 -320 229 267 67 9 chr6 152391168 152391273 -36888281 + L1ME LINE L1 5774 5884 -237 5396 108 1 1 chr6 152391393 152392200 -36887354 - L1PA13 LINE L1 -3 6160 5354 1728 176 3 14 chr6 152393269 152393565 -36885989 - AluJo SINE Alu -19 293 1 516 32 0 0 chr6 152393581 152393643 -36885911 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 2158 111 13 3 chr6 152393643 152393949 -36885605 - AluSq SINE Alu -4 309 1 1864 154 0 71 chr6 152394439 152394764 -36884790 - AluJo SINE Alu -10 302 1 554 330 72 8 chr6 152395401 152395637 -36883917 + MIR SINE MIR 4 254 -8 284 312 43 43 chr6 152395948 152396179 -36883375 - L2 LINE L2 -1395 1919 1689 972 153 34 68 chr6 152396426 152396689 -36882865 + MLT1B LTR MaLR 6 312 -84 2389 92 60 17 chr6 152396689 152397038 -36882516 - THE1B LTR MaLR 0 364 1 972 153 34 68 chr6 152397038 152397109 -36882445 + MLT1B LTR MaLR 312 384 -12 3322 122 9 31 chr6 152397603 152398142 -36881412 + MER1A DNA MER1_type 1 527 0 1689 193 10 3 chr6 152398864 152399164 -36880390 + AluJb SINE Alu 1 302 -10 484 234 82 113 chr6 152401327 152401583 -36877971 + MIR SINE MIR 13 260 -2 1802 159 0 0 chr6 152402099 152402370 -36877184 - AluJb SINE Alu -21 291 21 318 319 22 0 chr6 152402957 152403048 -36876506 + MIR SINE MIR 58 150 -58 186 103 0 0 chr6 152403206 152403235 -36876319 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 287 268 34 34 chr6 152403471 152403588 -36875966 + L1ME3 LINE L1 5716 5835 -327 2025 141 0 10 chr6 152403588 152403886 -36875668 + AluSq SINE Alu 1 295 -18 287 268 34 34 chr6 152403886 152403947 -36875607 + L1ME3 LINE L1 5834 5894 -268 911 112 0 22 chr6 152405098 152405232 -36874322 + FLAM_C SINE Alu 1 131 -2 24 0 0 0 chr6 152405814 152405838 -36873716 + AT_rich Low_complexity Low_complexity 1 24 0 1989 151 3 13 chr6 152406205 152406510 -36873044 - AluJb SINE Alu -10 302 1 24 0 0 0 chr6 152406778 152406802 -36872752 + AT_rich Low_complexity Low_complexity 1 24 0 2004 123 28 0 chr6 152407757 152408042 -36871512 - AluY SINE Alu -18 293 1 700 309 71 39 chr6 152408063 152408526 -36871028 + L2 LINE L2 2831 3308 -5 554 296 63 0 chr6 152408550 152408709 -36870845 + MIR SINE MIR 88 256 -6 261 75 0 0 chr6 152411135 152411175 -36868379 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 326 324 63 75 chr6 152413981 152414299 -36865255 - L2 LINE L2 0 3272 2959 1811 118 4 36 chr6 152415127 152415407 -36864147 - AluSq SINE Alu -5 308 38 6240 84 19 6 chr6 152416254 152418258 -36861296 - L1PA14 LINE L1 -2 6159 4146 4410 45 0 0 chr6 152418639 152419173 -36860381 - L1PA5 LINE L1 -2 6152 5619 1684 166 45 52 chr6 152420287 152420891 -36858663 + LTR48B LTR ERV1 1 787 0 357 121 0 0 chr6 152426239 152426297 -36853257 + ORSL DNA AcHobo 9 66 -209 253 227 113 10 chr6 152426339 152426436 -36853118 + ORSL DNA AcHobo 169 275 0 373 274 82 30 chr6 152427528 152427663 -36851891 - MIR SINE MIR -57 205 64 364 191 37 118 chr6 152428153 152428289 -36851265 + MLT1J2 LTR MaLR 27 151 -299 387 307 14 21 chr6 152428730 152428870 -36850684 + MLT1K LTR MaLR 11 149 -439 1652 164 87 52 chr6 152428907 152429396 -36850158 + MER39 LTR ERV1 1 589 -118 2071 71 3 71 chr6 152429396 152429706 -36849848 + AluY SINE Alu 1 289 -22 1652 164 87 52 chr6 152429706 152429787 -36849767 + MER39 LTR ERV1 589 666 -41 371 266 153 54 chr6 152429791 152430032 -36849522 + MLT1K LTR MaLR 186 450 -138 1330 82 0 0 chr6 152430362 152430546 -36849008 + L1MA5 LINE L1 6115 6298 -2 2234 127 3 0 chr6 152430561 152430869 -36848685 + AluSx SINE Alu 1 309 -3 324 264 55 9 chr6 152431046 152431156 -36848398 + L3 LINE CR1 1355 1469 -108 2541 127 40 19 chr6 152431696 152432121 -36847433 + MER57B LTR ERV1 1 434 0 376 223 165 0 chr6 152432651 152432754 -36846800 + L2 LINE L2 3184 3303 -10 214 377 79 35 chr6 152432935 152433049 -36846505 - L2 LINE L2 -27 3245 3127 353 173 8 87 chr6 152433103 152433230 -36846324 + L1ME3 LINE L1 6046 6162 0 197 240 13 0 chr6 152434181 152434256 -36845298 + CT-rich Low_complexity Low_complexity 1 76 0 1658 155 30 36 chr6 152435036 152435340 -36844214 - AluJb SINE Alu -10 302 1 1233 198 103 43 chr6 152435866 152436341 -36843213 - MER39 LTR ERV1 0 707 32 327 248 0 79 chr6 152436574 152436675 -36842879 + MIR SINE MIR 19 111 -151 1057 175 4 103 chr6 152437198 152437389 -36842165 - AluJo SINE Alu -3 309 147 453 81 0 0 chr6 152437389 152437451 -36842103 + (CA)n Simple_repeat Simple_repeat 2 63 0 1057 175 4 103 chr6 152437451 152437511 -36842043 - AluJo SINE Alu -165 147 83 311 0 26 0 chr6 152437728 152437767 -36841787 + (CA)n Simple_repeat Simple_repeat 1 40 0 325 209 61 61 chr6 152442763 152442878 -36836676 - L2 LINE L2 0 3313 3199 268 318 114 15 chr6 152443471 152443603 -36835951 + L3 LINE CR1 857 1001 -576 1099 325 167 26 chr6 152443712 152444543 -36835011 - L3 LINE CR1 -11 1566 619 402 329 44 40 chr6 152444593 152444845 -36834709 - MIR SINE MIR -7 255 3 248 328 0 8 chr6 152445290 152445412 -36834142 - L1MA9 LINE L1 -305 5826 5706 2250 128 29 63 chr6 152445416 152445824 -36833730 + L1MA9 LINE L1 5852 6243 -69 1936 128 3 17 chr6 152445824 152446122 -36833432 + AluSx SINE Alu 1 294 -18 2250 128 29 63 chr6 152446122 152446190 -36833364 + L1MA9 LINE L1 6243 6312 0 273 325 6 0 chr6 152446696 152446856 -36832698 - L1M2 LINE L1 -848 5464 5304 607 172 8 0 chr6 152446860 152446982 -36832572 + L1MA7 LINE L1 6017 6139 -152 6012 144 31 2 chr6 152446988 152448754 -36830800 - L1MA5 LINE L1 -2 6298 4495 247 346 81 16 chr6 152449107 152449292 -36830262 + L2 LINE L2 2129 2325 -989 542 283 127 19 chr6 152449316 152449528 -36830026 - MIR SINE MIR -26 236 2 9815 182 39 16 chr6 152450028 152450718 -36828836 - L1 LINE L1 -1634 5214 4541 2258 96 3 7 chr6 152450718 152451019 -36828535 - AluSx SINE Alu -12 300 1 9815 182 39 16 chr6 152451019 152454347 -36825207 - L1 LINE L1 -2307 4541 1103 1915 176 6 0 chr6 152454342 152454677 -36824877 - L1 LINE L1 -6512 337 1 * 188 351 41 73 chr6 152454818 152455134 -36824420 + L2 LINE L2 2291 2596 -718 180 0 0 0 chr6 152455210 152455230 -36824324 + (A)n Simple_repeat Simple_repeat 1 20 0 704 137 86 7 chr6 152455241 152455380 -36824174 + L1MB3 LINE L1 6030 6179 -4 2666 234 73 56 chr6 152455611 152455699 -36823855 - L1ME1 LINE L1 0 6100 6015 2006 139 0 7 chr6 152455699 152456000 -36823554 + AluSx SINE Alu 1 299 -13 2666 234 73 56 chr6 152456000 152457722 -36821832 - L1ME1 LINE L1 -85 6015 4263 264 256 11 11 chr6 152459013 152459103 -36820451 - L1ME1 LINE L1 -4573 1507 1418 1065 253 105 3 chr6 152459139 152459435 -36820119 - MLT1F1 LTR MaLR -47 520 195 524 295 81 39 chr6 152459480 152460013 -36819541 - L1ME1 LINE L1 -4781 1301 829 2337 104 0 0 chr6 152460013 152460321 -36819233 - AluSq SINE Alu -5 308 1 524 295 81 39 chr6 152460321 152460639 -36818915 - L1ME1 LINE L1 -5253 829 526 1654 134 101 8 chr6 152461012 152461280 -36818274 + AluJb SINE Alu 20 312 0 2161 114 7 0 chr6 152461803 152462093 -36817461 - AluSx SINE Alu -20 292 1 22 106 0 0 chr6 152462376 152462461 -36817093 + AT_rich Low_complexity Low_complexity 1 85 0 454 225 161 110 chr6 152462947 152463183 -36816371 + MIR SINE MIR 13 260 -2 314 115 246 0 chr6 152463400 152463461 -36816093 + AluSg SINE Alu 20 95 -205 2817 78 8 13 chr6 152463674 152464070 -36815484 - L1PA13 LINE L1 -2 6161 5768 2141 191 137 21 chr6 152464888 152464930 -36814624 - MLT2B1 LTR ERVL 0 520 484 619 12 25 0 chr6 152464930 152465010 -36814544 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 414 0 0 0 chr6 152465012 152465058 -36814496 + (TG)n Simple_repeat Simple_repeat 1 46 0 2141 191 137 21 chr6 152465058 152465478 -36814076 - MLT2B1 LTR ERVL -36 484 1 1433 208 86 6 chr6 152465823 152466136 -36813418 - MER58B DNA MER1_type -3 338 1 4094 90 0 4 chr6 152466570 152467083 -36812471 + MER9 LTR ERVK 1 511 0 1222 175 5 0 chr6 152467674 152467885 -36811669 - MLT1C LTR MaLR -234 233 22 180 0 0 0 chr6 152467935 152467955 -36811599 + (T)n Simple_repeat Simple_repeat 1 20 0 282 232 42 0 chr6 152468115 152468210 -36811344 + (TA)n Simple_repeat Simple_repeat 1 99 0 563 270 86 47 chr6 152468210 152468873 -36810681 - L1MEc LINE L1 -2373 3842 3154 322 265 73 60 chr6 152468874 152469108 -36810446 - L1MEc LINE L1 -3119 3096 2860 2834 107 11 5 chr6 152469769 152470142 -36809412 - THE1C LTR MaLR 0 375 1 2465 192 11 2 chr6 152470147 152470589 -36808965 - MLT1C LTR MaLR 0 467 22 212 0 36 0 chr6 152470641 152470669 -36808885 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1070 89 0 0 chr6 152470715 152470850 -36808704 + AluSq/x SINE Alu 1 135 -178 2003 134 14 0 chr6 152470850 152471142 -36808412 + AluSx SINE Alu 1 296 -16 316 250 180 23 chr6 152471386 152471521 -36808033 - L1MEc LINE L1 -4380 2016 1847 2475 171 14 30 chr6 152471521 152471960 -36807594 - MSTB1 LTR MaLR 0 432 1 316 250 180 23 chr6 152471960 152471996 -36807558 - L1MEc LINE L1 -4549 1847 1818 * 1768 241 47 35 chr6 152471962 152472159 -36807395 + L1MEc LINE L1 2014 2207 -4008 1910 156 0 0 chr6 152472159 152472465 -36807089 + AluSx SINE Alu 1 306 0 1768 241 47 35 chr6 152472465 152473093 -36806461 + L1MEc LINE L1 2207 2814 -3401 1925 284 91 43 chr6 152473324 152474362 -36805192 + HERVL LTR ERVL 3838 4924 -730 641 307 57 14 chr6 152474508 152474791 -36804763 + HERVL LTR ERVL 5156 5450 -314 429 199 25 118 chr6 152474900 152475061 -36804493 + MER104 DNA Tc2 22 167 -13 3876 169 85 64 chr6 152475597 152476406 -36803148 - LTR1B LTR ERV1 0 826 1 21 0 0 0 chr6 152476601 152476622 -36802932 + AT_rich Low_complexity Low_complexity 1 21 0 547 243 97 80 chr6 152477261 152477523 -36802031 + MLT1H1 LTR MaLR 17 283 -272 1498 265 30 8 chr6 152477523 152477893 -36801661 - MER70A LTR ERVL -2 470 93 836 205 6 0 chr6 152477892 152478053 -36801501 - MER70B LTR ERVL -416 162 1 * 663 266 27 11 chr6 152478075 152478263 -36801291 + MLT1H1 LTR MaLR 293 483 -72 5739 118 33 64 chr6 152478267 152478711 -36800843 + Tigger3(Golem) DNA MER2_type 4 460 -2569 2229 117 3 0 chr6 152478711 152479011 -36800543 + AluSg SINE Alu 1 301 -9 5739 118 33 64 chr6 152479011 152479709 -36799845 + Tigger3(Golem) DNA MER2_type 460 3028 -1 396 213 0 0 chr6 152479709 152479783 -36799771 + MLT1H1 LTR MaLR 482 555 0 302 338 51 13 chr6 152480764 152480921 -36798633 - MIR SINE MIR -49 213 51 691 297 31 9 chr6 152481178 152481400 -36798154 - MIR SINE MIR -20 242 16 430 338 21 0 chr6 152481412 152481554 -36798000 + MIR SINE MIR 46 190 -72 276 53 0 0 chr6 152483130 152483168 -36796386 + (CATA)n Simple_repeat Simple_repeat 2 39 0 195 42 0 0 chr6 152485169 152485193 -36794361 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 180 0 0 0 chr6 152486617 152486637 -36792917 + (CAAG)n Simple_repeat Simple_repeat 2 21 0 1460 154 43 119 chr6 152486881 152487276 -36792278 + MLT1A1 LTR MaLR 1 365 0 1502 198 50 39 chr6 152487306 152487718 -36791836 + MLT1C LTR MaLR 45 467 0 498 306 66 6 chr6 152487891 152488074 -36791480 - MIR3 SINE MIR -3 205 12 244 286 48 38 chr6 152488059 152488164 -36791390 - L2 LINE L2 0 3272 3167 * 1409 190 100 13 chr6 152488266 152488576 -36790978 - MLT2C1 LTR ERVL -2 395 59 286 255 66 158 chr6 152488633 152488892 -36790662 + L2 LINE L2 2977 3211 -61 649 241 62 66 chr6 152488895 152489045 -36790509 + MIR SINE MIR 2 152 -110 1552 194 45 0 chr6 152489045 152489334 -36790220 + AluJb SINE Alu 1 302 -10 649 241 62 66 chr6 152489334 152489424 -36790130 + MIR SINE MIR 152 241 -21 239 438 8 0 chr6 152489774 152489902 -36789652 + L2 LINE L2 3126 3254 -18 434 325 37 12 chr6 152490095 152490258 -36789296 + MIR SINE MIR 17 183 -79 239 272 25 25 chr6 152490515 152490596 -36788958 - L3 LINE CR1 -13 1564 1484 2121 125 0 0 chr6 152491342 152491623 -36787931 + AluSx SINE Alu 1 281 -31 2075 65 0 0 chr6 152491623 152491869 -36787685 + AluY SINE Alu 60 305 -6 425 301 29 19 chr6 152491988 152492197 -36787357 + L1 LINE L1 4719 4929 -1217 2287 231 31 8 chr6 152492789 152493278 -36786276 + LTR40a LTR ERVL 1 500 -19 385 164 75 0 chr6 152493278 152493345 -36786209 - MER5A DNA MER1_type -117 72 1 808 190 31 6 chr6 152493355 152493518 -36786036 + MIR SINE MIR 75 241 -21 23 33 0 0 chr6 152494658 152494688 -36784866 + AT_rich Low_complexity Low_complexity 1 30 0 1346 148 0 0 chr6 152494820 152495030 -36784524 + L1PA16 LINE L1 5957 6166 0 222 208 125 0 chr6 152497474 152497546 -36782008 + L2 LINE L2 3188 3268 -4 201 94 0 0 chr6 152502913 152502945 -36776609 + (TC)n Simple_repeat Simple_repeat 1 32 0 231 36 0 0 chr6 152504173 152504201 -36775353 + (TGG)n Simple_repeat Simple_repeat 1 28 0 378 0 0 0 chr6 152508759 152508801 -36770753 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr6 152510208 152510233 -36769321 + AT_rich Low_complexity Low_complexity 1 25 0 203 86 35 35 chr6 152511690 152511748 -36767806 + (AATAG)n Simple_repeat Simple_repeat 3 60 0 283 368 32 0 chr6 152512755 152512880 -36766674 + MIR SINE MIR 63 191 -71 35 24 0 0 chr6 152512943 152512985 -36766569 + AT_rich Low_complexity Low_complexity 1 42 0 603 318 72 30 chr6 152513170 152513570 -36765984 + L1ME3A LINE L1 5535 5951 -219 1940 145 67 28 chr6 152513594 152513953 -36765601 - THE1C LTR MaLR 0 375 3 2196 129 0 0 chr6 152514245 152514540 -36765014 + AluSg SINE Alu 1 295 -15 832 228 0 25 chr6 152514942 152515100 -36764454 + FRAM SINE Alu 2 155 -11 893 311 77 16 chr6 152515240 152515684 -36763870 - ERVL LTR ERVL -398 5366 4896 1755 270 59 63 chr6 152516951 152517135 -36762419 - L2 LINE L2 0 3313 3130 207 0 0 0 chr6 152517135 152517158 -36762396 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 1755 270 59 63 chr6 152517158 152517413 -36762141 - L2 LINE L2 -183 3130 2875 2457 64 0 10 chr6 152517413 152517724 -36761830 + AluY SINE Alu 3 310 -1 1755 270 59 63 chr6 152517724 152518233 -36761321 - L2 LINE L2 -438 2875 2365 810 223 116 19 chr6 152518270 152518589 -36760965 + LTR37A LTR ERV1 50 399 -27 194 252 351 0 chr6 152518623 152518734 -36760820 - L2 LINE L2 -903 2411 2262 1243 135 46 82 chr6 152518745 152518812 -36760742 + L1MB2 LINE L1 5874 5942 -229 1346 187 101 8 chr6 152518812 152519069 -36760485 + AluJb SINE Alu 1 281 -31 1243 135 46 82 chr6 152519069 152519305 -36760249 + L1MB2 LINE L1 5942 6166 -5 1561 204 46 0 chr6 152519625 152519905 -36759649 + AluJo SINE Alu 1 293 -19 615 269 130 10 chr6 152520080 152520288 -36759266 - MIR SINE MIR -11 251 19 1082 252 10 3 chr6 152520339 152520633 -36758921 + L1MDa LINE L1 911 1206 -5334 923 156 12 24 chr6 152520636 152520803 -36758751 + FRAM SINE Alu 1 161 -15 910 212 35 8 chr6 152520810 152520905 -36758649 + L1MDa LINE L1 1203 1294 -5246 1215 209 95 0 chr6 152520905 152521178 -36758376 - AluJo SINE Alu -3 299 1 910 212 35 8 chr6 152521178 152521337 -36758217 + L1MDa LINE L1 1294 1464 -5076 2509 54 0 0 chr6 152521651 152521948 -36757606 - AluY SINE Alu -14 297 1 454 282 36 0 chr6 152521962 152522072 -36757482 - MIR3 SINE MIR -49 159 46 25 0 0 0 chr6 152522296 152522321 -36757233 + AT_rich Low_complexity Low_complexity 1 25 0 504 313 106 18 chr6 152524634 152524851 -36754703 - MIR SINE MIR -14 248 13 301 193 86 22 chr6 152525243 152525350 -36754204 + MIR SINE MIR 78 202 -6 1017 233 104 51 chr6 152525821 152525989 -36753565 + MER34C LTR ERV1 1 159 -426 2169 153 44 0 chr6 152525989 152526375 -36753179 - MER57A LTR ERV1 0 403 1 1017 233 104 51 chr6 152526375 152526639 -36752915 + MER34C LTR ERV1 159 456 -129 290 238 29 48 chr6 152526618 152526723 -36752831 + MER34 LTR ERV1 440 542 0 * 361 356 45 20 chr6 152526889 152527091 -36752463 + L3 LINE CR1 969 1175 -402 181 299 24 94 chr6 152529035 152529162 -36750392 - L2 LINE L2 -27 3286 3169 2215 60 3 7 chr6 152530230 152530535 -36749019 - AluY SINE Alu 0 304 1 527 214 14 0 chr6 152532646 152532791 -36746763 + CT-rich Low_complexity Low_complexity 4 150 0 506 218 0 18 chr6 152534081 152534191 -36745363 - AluY SINE Alu 0 311 204 * 786 186 83 0 chr6 152534186 152534342 -36745212 - AluJb SINE Alu -143 169 1 2270 89 7 0 chr6 152534354 152534646 -36744908 - AluSp SINE Alu -19 294 1 4365 178 35 33 chr6 152534673 152534828 -36744726 - L1MB3 LINE L1 -22 6161 6008 2121 118 3 3 chr6 152534828 152535116 -36744438 + AluSq SINE Alu 1 288 -25 4365 178 35 33 chr6 152535116 152535186 -36744368 - L1MB3 LINE L1 -175 6008 5940 3477 125 156 5 chr6 152535186 152535800 -36743754 - MER39 LTR ERV1 0 707 1 4365 178 35 33 chr6 152535800 152535967 -36743587 - L1MB3 LINE L1 -243 5940 5775 1562 177 148 19 chr6 152535967 152536346 -36743208 + MSTA LTR MaLR 1 428 0 4365 178 35 33 chr6 152536346 152536701 -36742853 - L1PA8 LINE L1 -408 5775 5422 2889 70 22 8 chr6 152536701 152537101 -36742453 + L1PA8 LINE L1 5767 6172 0 4365 178 35 33 chr6 152537101 152538165 -36741389 - L1MB3 LINE L1 -761 5422 4346 1016 97 5 32 chr6 152538405 152538590 -36740964 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1226 167 158 17 chr6 152538590 152538824 -36740730 - AluSg SINE Alu -32 278 12 210 265 0 0 chr6 152539850 152539899 -36739655 - MER91B DNA MER1_type -57 133 85 460 234 7 73 chr6 152539909 152540046 -36739508 - MER91B DNA MER1_type -61 129 2 633 296 6 6 chr6 152540061 152540230 -36739324 + L2 LINE L2 2433 2601 -713 831 179 0 0 chr6 152540282 152540427 -36739127 + MER58B DNA MER1_type 197 341 0 686 245 155 71 chr6 152540428 152540868 -36738686 + L2 LINE L2 2606 3113 -200 3697 83 24 0 chr6 152540868 152541372 -36738182 - L1PA10 LINE L1 -5 6163 5648 686 245 155 71 chr6 152541372 152541514 -36738040 + L2 LINE L2 3113 3242 -71 1985 213 43 91 chr6 152541603 152542294 -36737260 - LTR8 LTR ERV1 -4 687 30 2391 81 0 3 chr6 152543453 152543749 -36735805 + AluSg SINE Alu 1 295 -15 217 304 210 7 chr6 152544701 152544839 -36734715 + L2 LINE L2 2670 2835 -479 297 159 0 116 chr6 152545029 152545098 -36734456 + L2 LINE L2 3253 3313 0 564 169 0 0 chr6 152545154 152545243 -36734311 - FLAM_A SINE Alu -20 122 34 523 309 74 50 chr6 152545300 152545785 -36733769 + L2 LINE L2 1914 2410 -904 1527 156 19 63 chr6 152545942 152546257 -36733297 - AluJo SINE Alu -11 301 1 3552 301 81 45 chr6 152546340 152548268 -36731286 + L2 LINE L2 1141 3145 -168 2104 129 0 3 chr6 152548268 152548577 -36730977 - AluSx SINE Alu 0 308 1 3552 301 81 45 chr6 152548577 152548694 -36730860 + L2 LINE L2 3145 3256 -57 311 253 0 0 chr6 152548780 152548855 -36730699 + MLT1C LTR MaLR 194 268 -199 2001 75 54 65 chr6 152548894 152549188 -36730366 + AluSg SINE Alu 2 292 -18 586 343 80 26 chr6 152549266 152549800 -36729754 + HERV16 LTR ERVL 2454 3053 -2036 235 311 33 0 chr6 152549857 152549979 -36729575 + L1MB8 LINE L1 5476 5601 -563 304 301 75 23 chr6 152550099 152550232 -36729322 + L1MB8 LINE L1 5767 5906 -272 22 0 0 0 chr6 152551398 152551420 -36728134 + AT_rich Low_complexity Low_complexity 1 22 0 2438 159 18 51 chr6 152552670 152553216 -36726338 + L1MB2 LINE L1 5644 6171 0 222 118 0 0 chr6 152553567 152553601 -36725953 + (T)n Simple_repeat Simple_repeat 1 34 0 182 103 0 51 chr6 152553676 152553715 -36725839 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1208 163 0 0 chr6 152555711 152555907 -36723647 + MER2 DNA MER2_type 1 196 -149 27 49 0 0 chr6 152555907 152555948 -36723606 + AT_rich Low_complexity Low_complexity 1 41 0 225 139 0 0 chr6 152556195 152556238 -36723316 + (CAAAG)n Simple_repeat Simple_repeat 4 46 0 882 288 69 28 chr6 152556329 152556752 -36722802 + L1MC4a LINE L1 5506 5945 -1863 1543 174 23 3 chr6 152556904 152557208 -36722346 - L1MB5 LINE L1 -8 6166 5857 205 357 71 9 chr6 152557900 152558012 -36721542 - L3 LINE CR1 -39 1538 1420 549 261 0 0 chr6 152558044 152558155 -36721399 - MER81 DNA DNA -2 112 2 423 279 43 56 chr6 152558658 152558819 -36720735 - MER5B DNA MER1_type 0 178 20 207 0 0 0 chr6 152558828 152558851 -36720703 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2205 113 3 0 chr6 152558854 152559154 -36720400 - AluSx SINE Alu -11 301 1 297 278 46 37 chr6 152559240 152559348 -36720206 - MIR SINE MIR -48 214 106 1741 108 8 8 chr6 152559853 152560113 -36719441 + AluSx SINE Alu 43 302 0 326 217 33 8 chr6 152562498 152562618 -36716936 + CT-rich Low_complexity Low_complexity 5 127 0 258 325 177 33 chr6 152562810 152563053 -36716501 - L2 LINE L2 -188 3084 2807 183 42 0 0 chr6 152563718 152563742 -36715812 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 33 25 0 0 chr6 152563750 152563790 -36715764 + AT_rich Low_complexity Low_complexity 1 40 0 1833 128 113 3 chr6 152563792 152564111 -36715443 - L1PB1 LINE L1 -2 6149 5796 9634 185 13 9 chr6 152564131 152564940 -36714614 - L1PB1 LINE L1 -512 5639 4834 2184 136 3 0 chr6 152564940 152565249 -36714305 - AluSx SINE Alu -2 310 1 9634 185 13 9 chr6 152565249 152567256 -36712298 - L1PB1 LINE L1 -1317 4834 2819 2387 102 0 0 chr6 152567256 152567561 -36711993 - AluSq SINE Alu -8 305 1 9634 185 13 9 chr6 152567561 152567660 -36711894 - L1PB1 LINE L1 -3332 2819 2722 369 162 0 0 chr6 152567761 152567829 -36711725 + CT-rich Low_complexity Low_complexity 1 68 0 303 28 0 0 chr6 152568010 152568046 -36711508 + (TG)n Simple_repeat Simple_repeat 2 37 0 2344 157 24 43 chr6 152568073 152568214 -36711340 + MSTB2 LTR MaLR 1 143 -314 2472 110 8 55 chr6 152568214 152568256 -36711298 - THE1B LTR MaLR 0 364 322 2302 118 0 3 chr6 152568256 152568570 -36710984 + AluSp SINE Alu 1 313 0 2472 110 8 55 chr6 152568570 152568909 -36710645 - THE1B LTR MaLR -42 322 1 2344 157 24 43 chr6 152568909 152569233 -36710321 + MSTB2 LTR MaLR 143 457 0 297 252 99 38 chr6 152569825 152569956 -36709598 + L2 LINE L2 3166 3304 -9 189 252 26 133 chr6 152571279 152571430 -36708124 + MIR SINE MIR 47 181 -81 346 211 36 58 chr6 152571519 152571670 -36707884 + MIR SINE MIR 19 165 -63 21 0 0 0 chr6 152571724 152571745 -36707809 + AT_rich Low_complexity Low_complexity 1 21 0 333 296 82 0 chr6 152572401 152572536 -36707018 - MIR SINE MIR 0 262 117 264 322 26 9 chr6 152572588 152572703 -36706851 - L2 LINE L2 -2031 1283 1167 401 287 26 0 chr6 152573648 152573763 -36705791 - MER5B DNA MER1_type -60 118 1 250 277 262 0 chr6 152574375 152574516 -36705038 + MER5B DNA MER1_type 1 178 0 1048 137 44 6 chr6 152574587 152574769 -36704785 - MER5A DNA MER1_type 0 189 1 2547 138 50 59 chr6 152574813 152575121 -36704433 + L1MC3 LINE L1 7268 7570 -215 2252 123 0 0 chr6 152575121 152575423 -36704131 + AluSx SINE Alu 1 302 -10 2547 138 50 59 chr6 152575423 152575637 -36703917 + L1MC3 LINE L1 7570 7785 0 222 37 0 0 chr6 152575637 152575664 -36703890 + (A)n Simple_repeat Simple_repeat 1 27 0 188 131 49 16 chr6 152575884 152575945 -36703609 + (TA)n Simple_repeat Simple_repeat 1 63 0 2360 67 0 0 chr6 152576317 152576633 -36702921 - AluY SINE Alu 0 316 1 450 239 35 0 chr6 152577348 152577461 -36702093 - MIR SINE MIR -138 124 8 270 0 0 0 chr6 152577793 152577823 -36701731 + (A)n Simple_repeat Simple_repeat 1 30 0 366 283 103 28 chr6 152579368 152579658 -36699896 - L1ME4a LINE L1 -12 6109 5798 2204 107 0 10 chr6 152579764 152580078 -36699476 - AluSx SINE Alu 0 312 1 268 326 21 97 chr6 152580380 152580442 -36699112 - L2 LINE L2 -25 3247 3182 1932 139 24 14 chr6 152580442 152580736 -36698818 - AluSx SINE Alu -11 301 5 268 326 21 97 chr6 152580736 152580817 -36698737 - L2 LINE L2 -90 3182 3115 201 214 0 0 chr6 152581355 152581397 -36698157 + L2 LINE L2 3256 3297 -16 713 289 93 48 chr6 152581405 152581844 -36697710 - L1ME4a LINE L1 -367 5754 5296 269 169 17 0 chr6 152582108 152582167 -36697387 + (TG)n Simple_repeat Simple_repeat 1 60 0 2345 72 0 31 chr6 152583289 152583610 -36695944 - AluY SINE Alu 0 311 1 403 252 71 71 chr6 152583802 152584012 -36695542 + L2 LINE L2 3094 3303 -10 2235 113 7 0 chr6 152584493 152584802 -36694752 + AluSq SINE Alu 1 311 -2 725 230 44 5 chr6 152585775 152585979 -36693575 + MIR SINE MIR 41 252 -10 334 290 111 48 chr6 152586114 152586366 -36693188 + L2 LINE L2 3041 3308 -5 2613 43 3 0 chr6 152587042 152587346 -36692208 - AluY SINE Alu -6 305 1 7666 32 5 0 chr6 152587437 152588834 -36690720 + L1PA4 LINE L1 4754 6155 0 1045 200 0 54 chr6 152590185 152590425 -36689129 + AluJo SINE Alu 85 311 -1 201 100 0 0 chr6 152592019 152592049 -36687505 + MIR SINE MIR 115 144 -118 1565 86 27 18 chr6 152592401 152592806 -36686748 - AluSg/x SINE Alu 0 310 84 2622 135 37 2 chr6 152595319 152595726 -36683828 - MSTA LTR MaLR -5 423 3 981 192 0 82 chr6 152595729 152595948 -36683606 - MER3 DNA MER1_type 0 209 9 420 20 0 0 chr6 152596566 152596615 -36682939 + (TG)n Simple_repeat Simple_repeat 2 50 0 180 0 0 0 chr6 152598452 152598472 -36681082 + (TG)n Simple_repeat Simple_repeat 2 21 0 678 228 54 43 chr6 152598484 152598668 -36680886 + MER20 DNA MER1_type 4 189 -30 322 234 27 72 chr6 152598790 152598901 -36680653 + MIR SINE MIR 14 119 -143 930 157 28 83 chr6 152598901 152598934 -36680620 - MER67C LTR ERV1 0 710 677 2260 123 19 27 chr6 152598934 152599301 -36680253 - THE1B LTR MaLR 0 364 1 930 157 28 83 chr6 152599301 152599383 -36680171 - MER67C LTR ERV1 -33 677 592 1947 153 16 10 chr6 152599383 152599691 -36679863 + AluSx SINE Alu 1 310 -2 930 157 28 83 chr6 152599691 152599790 -36679764 - MER67C LTR ERV1 -118 592 507 948 198 154 17 chr6 152599794 152600087 -36679467 - MER67C LTR ERV1 -375 335 3 2330 89 3 10 chr6 152600124 152600438 -36679116 + AluSq SINE Alu 1 312 -1 198 0 0 0 chr6 152600447 152600469 -36679085 + (CAA)n Simple_repeat Simple_repeat 2 23 0 442 164 90 74 chr6 152600469 152600591 -36678963 + MIR SINE MIR 137 260 -2 859 197 202 37 chr6 152600616 152601038 -36678516 + MLT1E3 LTR MaLR 2 546 -78 210 288 125 12 chr6 152601563 152601643 -36677911 - MER5A DNA MER1_type -63 126 38 529 297 87 29 chr6 152601729 152602005 -36677549 - LTR33 LTR ERVL -3 518 227 283 278 21 10 chr6 152602055 152602152 -36677402 - LTR33 LTR ERVL -380 141 44 2303 200 60 16 chr6 152603479 152603830 -36675724 - MER82 DNA MER2_type 0 653 272 1027 203 53 120 chr6 152603830 152604248 -36675306 + MLT1B LTR MaLR 1 390 0 2303 200 60 16 chr6 152604248 152604396 -36675158 - MER82 DNA MER2_type -381 272 132 892 167 20 37 chr6 152604413 152604499 -36675055 + L1MC1 LINE L1 5183 5269 -913 2495 116 83 5 chr6 152604499 152604896 -36674658 + MSTA LTR MaLR 1 428 0 892 167 20 37 chr6 152604896 152605067 -36674487 + L1MC1 LINE L1 5269 5439 -743 2233 117 3 0 chr6 152605069 152605360 -36674194 + AluSx SINE Alu 1 292 -20 376 172 0 0 chr6 152605466 152605548 -36674006 + AluSp/q SINE Alu 232 313 0 2199 123 27 3 chr6 152605549 152605881 -36673673 + L1MC1 LINE L1 5433 5772 -561 1420 223 47 47 chr6 152605889 152606123 -36673431 - MLT1B LTR MaLR -8 382 146 2091 125 0 13 chr6 152606123 152606428 -36673126 + AluSx SINE Alu 1 301 -11 1420 223 47 47 chr6 152606428 152606574 -36672980 - MLT1B LTR MaLR -243 147 2 3014 147 29 30 chr6 152606575 152607134 -36672420 + L1MC1 LINE L1 5776 6333 0 490 240 24 40 chr6 152607139 152607228 -36672326 - MER82 DNA MER2_type -520 133 45 3350 140 36 7 chr6 152607228 152607777 -36671777 - MER34B LTR ERV1 0 565 1 490 240 24 40 chr6 152607777 152607812 -36671742 - MER82 DNA MER2_type -608 45 11 2200 110 0 0 chr6 152608978 152609327 -36670227 + AluSg SINE Alu 1 349 0 2089 145 3 6 chr6 152609407 152609718 -36669836 + AluSx SINE Alu 1 310 -2 465 19 0 0 chr6 152612067 152612121 -36667433 + (TG)n Simple_repeat Simple_repeat 1 54 0 228 170 75 0 chr6 152612642 152612695 -36666859 + (CCCCG)n Simple_repeat Simple_repeat 3 59 0 2627 33 0 3 chr6 152615371 152615670 -36663884 - AluY SINE Alu -13 298 1 732 179 0 22 chr6 152615690 152615824 -36663730 + FLAM_A SINE Alu 12 142 0 823 48 0 0 chr6 152617442 152617545 -36662009 - L1PA5 LINE L1 -1 6153 6051 606 267 182 45 chr6 152617883 152618235 -36661319 + L2 LINE L2 2913 3312 -1 23 78 0 0 chr6 152618349 152618400 -36661154 + AT_rich Low_complexity Low_complexity 1 51 0 204 97 0 0 chr6 152618776 152618807 -36660747 + (A)n Simple_repeat Simple_repeat 1 31 0 4896 122 55 20 chr6 152618807 152619670 -36659884 - MER4D LTR ERV1 -8 895 3 22 0 0 0 chr6 152619755 152619777 -36659777 + AT_rich Low_complexity Low_complexity 1 22 0 1576 184 53 0 chr6 152620720 152621003 -36658551 - AluJo SINE Alu -14 298 1 320 276 19 29 chr6 152621123 152621228 -36658326 + MIR3 SINE MIR 105 208 0 1012 196 80 5 chr6 152621287 152621511 -36658043 + MIR SINE MIR 22 262 0 293 242 92 42 chr6 152621944 152622064 -36657490 - MIR SINE MIR -75 133 7 231 36 0 0 chr6 152622116 152622144 -36657410 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 2299 110 3 0 chr6 152622270 152622580 -36656974 + AluSq SINE Alu 1 311 -2 463 171 24 0 chr6 152622599 152622681 -36656873 + AluS SINE Alu 1 84 -228 2303 122 11 22 chr6 152623207 152623575 -36655979 - THE1B LTR MaLR 0 364 1 214 285 50 21 chr6 152623894 152624004 -36655550 + MIR SINE MIR 19 132 -76 461 214 97 19 chr6 152624030 152624184 -36655370 - L1MC4a LINE L1 -1945 5863 5698 1876 172 0 3 chr6 152624198 152624494 -36655060 - AluJo SINE Alu -17 295 1 306 241 57 78 chr6 152624532 152624673 -36654881 - L1MC4a LINE L1 -812 5334 5197 26 0 0 0 chr6 152624829 152624855 -36654699 + AT_rich Low_complexity Low_complexity 1 26 0 323 279 0 22 chr6 152624872 152625008 -36654546 - L1P LINE L1 -1113 5033 4901 225 0 0 0 chr6 152625227 152625252 -36654302 + (CA)n Simple_repeat Simple_repeat 1 25 0 1555 240 41 43 chr6 152625397 152625736 -36653818 - L1ME1 LINE L1 -20 6215 5876 2244 90 23 0 chr6 152625736 152626035 -36653519 - AluY SINE Alu -5 306 1 1555 240 41 43 chr6 152626035 152626233 -36653321 - L1ME1 LINE L1 -359 5876 5679 369 250 91 43 chr6 152626227 152626374 -36653180 - L1ME1 LINE L1 -2948 3267 3104 * 2105 68 0 11 chr6 152626374 152626639 -36652915 - AluY SINE Alu -21 290 29 369 250 91 43 chr6 152626639 152626723 -36652831 - L1ME1 LINE L1 -3111 3104 3025 3660 167 48 136 chr6 152626731 152627125 -36652429 - Tigger6a DNA MER2_type -515 1082 655 954 131 6 0 chr6 152627125 152627285 -36652269 + L1MB3 LINE L1 6021 6181 -2 3660 167 48 136 chr6 152627285 152628068 -36651486 - Tigger6a DNA MER2_type -942 655 8 1973 211 36 110 chr6 152628087 152628465 -36651089 - L1ME1 LINE L1 -3230 2985 2581 2340 113 0 0 chr6 152628465 152628775 -36650779 - AluSg SINE Alu 0 310 1 1973 211 36 110 chr6 152628775 152629645 -36649909 - L1ME1 LINE L1 -3634 2581 1844 8752 155 44 7 chr6 152630167 152630275 -36649279 - L1PBa LINE L1 -3675 3187 3084 2189 137 0 0 chr6 152630275 152630575 -36648979 - AluSx SINE Alu -12 300 1 8752 155 44 7 chr6 152630575 152632258 -36647296 - L1PBa LINE L1 -3778 3084 1337 3503 208 99 25 chr6 152632285 152633316 -36646238 - L1PBa LINE L1 -5707 1156 50 520 280 66 22 chr6 152633753 152634084 -36645470 + L1MC4a LINE L1 5669 6008 -113 1866 164 3 31 chr6 152634445 152634762 -36644792 + AluSx SINE Alu 5 312 0 1933 243 73 14 chr6 152634791 152635417 -36644137 + MER63C DNA MER1_type 257 919 -11 1796 186 31 5 chr6 152635627 152635706 -36643848 + L1P LINE L1 4616 4691 -1455 192 40 0 0 chr6 152635706 152635731 -36643823 + (CAA)n Simple_repeat Simple_repeat 1 25 0 1796 186 31 5 chr6 152635731 152636038 -36643516 + L1P LINE L1 4691 5012 -1134 2052 133 7 0 chr6 152636174 152636476 -36643078 - AluSx SINE Alu -8 304 1 468 333 72 47 chr6 152636480 152636867 -36642687 - L1M4 LINE L1 -1306 4840 4444 300 230 170 10 chr6 152636881 152636981 -36642573 + MIR SINE MIR 134 249 -13 301 332 224 0 chr6 152637520 152637716 -36641838 - MIR SINE MIR -15 247 8 266 278 53 98 chr6 152638737 152638870 -36640684 + L2 LINE L2 3146 3272 0 202 299 0 0 chr6 152639329 152639396 -36640158 - MER5A DNA MER1_type -119 70 4 1224 172 57 0 chr6 152639414 152639658 -36639896 - MER58B DNA MER1_type -28 313 56 344 276 155 35 chr6 152639820 152639994 -36639560 + MIR SINE MIR 34 228 -34 521 294 86 61 chr6 152640338 152640583 -36638971 - MIR SINE MIR -4 258 8 186 71 0 0 chr6 152641343 152641371 -36638183 + (T)n Simple_repeat Simple_repeat 1 28 0 1995 109 3 40 chr6 152642207 152642510 -36637044 + AluSx SINE Alu 1 292 -20 26 50 0 0 chr6 152642510 152642550 -36637004 + AT_rich Low_complexity Low_complexity 1 40 0 356 357 87 24 chr6 152643439 152643904 -36635650 - L2 LINE L2 -45 3268 2778 330 330 65 94 chr6 152644978 152645412 -36634142 + L2 LINE L2 2835 3255 -17 4164 55 7 2 chr6 152645482 152646355 -36633199 - LTR5 LTR ERVK 0 969 1 385 313 181 26 chr6 152646482 152646824 -36632730 + L2 LINE L2 2919 3313 0 493 309 199 30 chr6 152646880 152647488 -36632066 + L2 LINE L2 1806 2516 -798 13364 193 16 20 chr6 152648020 152653508 -36626046 + L1PB1 LINE L1 1341 6864 -3 21 0 0 0 chr6 152654418 152654439 -36625115 + AT_rich Low_complexity Low_complexity 1 21 0 238 284 103 32 chr6 152654803 152654958 -36624596 + L2 LINE L2 3147 3312 -1 231 248 97 83 chr6 152655561 152655706 -36623848 - MER5A DNA MER1_type 0 189 43 189 262 106 85 chr6 152655589 152655730 -36623824 + MER5A DNA MER1_type 40 183 -6 * 210 262 66 0 chr6 152655768 152655829 -36623725 + L2 LINE L2 1420 1484 -1830 246 32 0 0 chr6 152655832 152655863 -36623691 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 828 124 13 59 chr6 152655963 152656116 -36623438 + AluSp/q SINE Alu 161 306 -7 259 340 241 0 chr6 152656147 152656388 -36623166 - L2 LINE L2 -820 2494 2196 1731 176 10 10 chr6 152656435 152656725 -36622829 - AluJb SINE Alu -16 296 7 1206 231 144 48 chr6 152656738 152657218 -36622336 - MER34B LTR ERV1 -39 526 1 321 284 82 39 chr6 152657602 152657810 -36621744 + L2 LINE L2 3096 3312 -1 1322 281 53 52 chr6 152657919 152658709 -36620845 + L1MEc LINE L1 259 1049 -5514 748 128 0 0 chr6 152658714 152658823 -36620731 + HY1 scRNA scRNA 1 109 -3 1338 206 16 52 chr6 152658916 152659222 -36620332 + AluJb SINE Alu 6 300 -12 516 280 65 61 chr6 152659250 152659646 -36619908 + L1MEc LINE L1 1028 1385 -4999 212 276 0 0 chr6 152659653 152659711 -36619843 + (TA)n Simple_repeat Simple_repeat 2 59 0 2261 100 0 13 chr6 152659850 152660013 -36619541 - AluSp SINE Alu -17 296 137 2402 78 3 3 chr6 152660013 152660319 -36619235 - AluY SINE Alu -5 306 1 2261 100 0 13 chr6 152660319 152660455 -36619099 - AluSp SINE Alu -176 137 1 21 0 0 0 chr6 152660800 152660821 -36618733 + AT_rich Low_complexity Low_complexity 1 21 0 6267 69 14 27 chr6 152660823 152661921 -36617633 - L1PA10 LINE L1 -4 6164 5041 301 284 15 0 chr6 152661921 152661988 -36617566 - L2 LINE L2 0 3313 3246 431 167 11 0 chr6 152662022 152662112 -36617442 + MER53 DNA DNA 95 185 -4 296 362 46 23 chr6 152662204 152662378 -36617176 - L2 LINE L2 -193 3079 2902 1697 160 86 25 chr6 152662937 152663331 -36616223 - LTR52 LTR ERVL -3 418 1 726 237 64 126 chr6 152663432 152663981 -36615573 - LTR33 LTR ERVL -2 519 5 405 0 0 0 chr6 152666074 152666119 -36613435 + (CA)n Simple_repeat Simple_repeat 2 46 0 244 312 13 0 chr6 152667330 152667407 -36612147 - L2 LINE L2 0 3313 3236 533 251 21 26 chr6 152667654 152667860 -36611694 - MER58 DNA MER1_type 0 2420 5 241 373 138 26 chr6 152668064 152668375 -36611179 - L2 LINE L2 -656 2658 2313 702 226 19 0 chr6 152668421 152668580 -36610974 - MIR SINE MIR -10 252 91 436 286 120 28 chr6 152668605 152668962 -36610592 - L2 LINE L2 -1065 2249 1860 430 339 121 46 chr6 152669012 152669723 -36609831 - L2 LINE L2 -2345 969 206 22 0 0 0 chr6 152669798 152669820 -36609734 + AT_rich Low_complexity Low_complexity 1 22 0 349 123 0 25 chr6 152671287 152671368 -36608186 + (TA)n Simple_repeat Simple_repeat 2 80 0 257 284 29 29 chr6 152671722 152671824 -36607730 + MIR SINE MIR 111 212 -50 408 278 36 72 chr6 152672169 152672363 -36607191 - L1ME4a LINE L1 -128 5993 5807 530 266 75 20 chr6 152673818 152674017 -36605537 + MER63A DNA MER1_type 1 210 0 212 147 0 0 chr6 152674671 152674705 -36604849 + (TG)n Simple_repeat Simple_repeat 2 35 0 283 306 35 0 chr6 152674761 152674934 -36604620 + (TA)n Simple_repeat Simple_repeat 1 179 0 465 202 11 0 chr6 152675913 152676002 -36603552 + MER58A DNA MER1_type 1 90 -17 181 379 92 0 chr6 152676071 152676158 -36603396 - L2 LINE L2 -49 3223 3129 243 351 42 42 chr6 152676272 152676537 -36603017 - L2 LINE L2 -338 2976 2712 2039 98 61 3 chr6 152677078 152677373 -36602181 - AluSx SINE Alu 0 312 1 304 277 136 41 chr6 152677410 152677749 -36601805 + L1ME4a LINE L1 5513 5883 -238 191 273 71 50 chr6 152678069 152678168 -36601386 - L2 LINE L2 -5 3308 3208 2310 112 0 6 chr6 152678296 152678608 -36600946 + AluSx SINE Alu 1 310 -2 1006 97 0 0 chr6 152678934 152679068 -36600486 + AluSg/x SINE Alu 149 282 -30 241 326 225 0 chr6 152679271 152679409 -36600145 - MIR SINE MIR -74 188 20 776 219 28 70 chr6 152679547 152679659 -36599895 - L1ME3A LINE L1 -22 6148 6033 2225 120 0 7 chr6 152679659 152679790 -36599764 + AluSx SINE Alu 1 131 -181 207 0 0 0 chr6 152679790 152679813 -36599741 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2225 120 0 7 chr6 152679813 152679990 -36599564 + AluSx SINE Alu 131 307 -5 776 219 28 70 chr6 152679990 152680025 -36599529 - L1ME3A LINE L1 -137 6033 5998 1475 176 67 29 chr6 152680025 152680399 -36599155 + MLT1B LTR MaLR 3 390 0 776 219 28 70 chr6 152680399 152680537 -36599017 - L1ME3A LINE L1 -172 5998 5874 2431 210 92 15 chr6 152680543 152681290 -36598264 - L1M4 LINE L1 -3134 3012 2208 303 71 0 0 chr6 152681471 152681513 -36598041 + (GA)n Simple_repeat Simple_repeat 1 42 0 420 283 33 17 chr6 152681601 152681721 -36597833 + MER5A DNA MER1_type 68 189 0 2180 105 3 0 chr6 152682043 152682339 -36597215 + AluSp SINE Alu 1 297 -16 340 230 14 14 chr6 152682601 152682675 -36596879 + L2 LINE L2 3235 3308 -5 381 299 58 77 chr6 152683213 152683487 -36596067 + L1PB4 LINE L1 231 499 -6351 231 339 85 0 chr6 152683675 152683793 -36595761 + L1PB4 LINE L1 830 957 -5893 268 321 56 25 chr6 152684253 152684449 -36595105 + L1PA15-16 LINE L1 1325 1526 -5323 449 232 0 0 chr6 152684483 152684582 -36594972 + L1PA15-16 LINE L1 1472 1570 -5279 * 8195 213 37 85 chr6 152684563 152687440 -36592114 + L1PB4 LINE L1 1338 4351 -2508 2523 111 17 8 chr6 152687440 152687801 -36591753 - THE1B LTR MaLR 0 364 1 10780 116 6 30 chr6 152687801 152689420 -36590134 - THE1B-int LTR MaLR 0 1580 2 2217 110 26 9 chr6 152689420 152689766 -36589788 - THE1B LTR MaLR -12 352 1 8195 213 37 85 chr6 152689766 152691949 -36587605 + L1PB4 LINE L1 4349 6634 -225 2068 102 4 0 chr6 152691949 152692223 -36587331 + AluSg SINE Alu 1 275 -35 984 18 0 0 chr6 152692226 152692340 -36587214 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 8195 213 37 85 chr6 152692340 152692717 -36586837 + L1PB4 LINE L1 6636 6856 -3 473 282 63 6 chr6 152692966 152693140 -36586414 - HsTC2 DNA Tc2 -1679 219 36 2114 142 116 13 chr6 152693158 152693546 -36586008 + MSTA LTR MaLR 1 428 0 1795 155 14 40 chr6 152694709 152695005 -36584549 + AluJo SINE Alu 1 288 -24 297 51 0 0 chr6 152695057 152695096 -36584458 + (CA)n Simple_repeat Simple_repeat 2 40 0 2337 97 0 3 chr6 152695341 152695639 -36583915 + AluSx SINE Alu 1 297 -15 180 77 0 0 chr6 152695654 152695680 -36583874 + (TA)n Simple_repeat Simple_repeat 1 26 0 2507 165 42 20 chr6 152695775 152696277 -36583277 + L1MC2 LINE L1 5831 6343 -1 22 80 0 0 chr6 152696843 152696893 -36582661 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr6 152697061 152697097 -36582457 + AT_rich Low_complexity Low_complexity 1 36 0 315 240 113 47 chr6 152699063 152699213 -36580341 + L1ME4a LINE L1 5953 6112 -9 829 229 24 31 chr6 152699569 152699811 -36579743 - MIR SINE MIR 0 262 27 300 357 113 37 chr6 152699769 152700284 -36579270 + L2 LINE L2 2234 2787 -527 * 2317 164 15 0 chr6 152701578 152701975 -36577579 + MER57A LTR ERV1 1 403 0 2026 105 0 69 chr6 152702018 152702313 -36577241 + AluSc SINE Alu 1 272 -37 225 0 0 0 chr6 152702313 152702338 -36577216 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2026 105 0 69 chr6 152702338 152702374 -36577180 + AluSc SINE Alu 272 309 0 236 283 0 0 chr6 152702375 152702428 -36577126 - L2 LINE L2 -19 3294 3242 316 198 12 12 chr6 152703210 152703291 -36576263 - LTR67 LTR ERVL -2 555 475 183 351 101 27 chr6 152703764 152703952 -36575602 + L3 LINE CR1 1039 1240 -337 1402 217 14 40 chr6 152704991 152705341 -36574213 + LTR40a LTR ERVL 170 510 -9 220 268 47 59 chr6 152705342 152705457 -36574097 + MER5A DNA MER1_type 47 178 0 306 111 0 19 chr6 152705765 152705819 -36573735 - LTR33A LTR ERVL -25 498 446 736 253 57 22 chr6 152705846 152706075 -36573479 - LTR40c LTR ERVL -228 237 1 1578 209 61 9 chr6 152706478 152706823 -36572731 + MLT1A1 LTR MaLR 3 365 0 215 31 31 0 chr6 152706870 152706902 -36572652 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1030 82 0 0 chr6 152706907 152707042 -36572512 - AluY SINE Alu -30 281 147 564 332 46 11 chr6 152707153 152707408 -36572146 + MIR SINE MIR 3 262 0 1011 147 9 81 chr6 152707848 152708059 -36571495 - MER58A DNA MER1_type -3 221 26 212 296 23 23 chr6 152708075 152708163 -36571391 - L2 LINE L2 -84 3229 3142 454 307 118 5 chr6 152711548 152711760 -36567794 + MIR SINE MIR 20 255 -7 396 299 39 0 chr6 152711821 152711948 -36567606 - MER94 DNA DNA 0 134 3 273 319 172 0 chr6 152712205 152712321 -36567233 - MIR SINE MIR -90 172 37 22 0 0 0 chr6 152712358 152712380 -36567174 + AT_rich Low_complexity Low_complexity 1 22 0 1940 143 25 0 chr6 152712447 152712733 -36566821 - AluSx SINE Alu -15 297 5 494 16 16 0 chr6 152713686 152713749 -36565805 + (CA)n Simple_repeat Simple_repeat 2 65 0 192 71 0 0 chr6 152714348 152714376 -36565178 - MIR SINE MIR -121 141 114 2601 238 94 14 chr6 152714888 152716367 -36563187 + L1MD2 LINE L1 4546 6149 -210 185 250 16 78 chr6 152716583 152716647 -36562907 - L2 LINE L2 -12 3260 3201 2216 96 0 3 chr6 152716677 152716980 -36562574 - AluY SINE Alu -9 302 1 254 303 49 68 chr6 152717133 152717295 -36562259 + L2 LINE L2 3137 3295 -18 2101 95 75 32 chr6 152718127 152718679 -36560875 + MER51A LTR ERV1 1 634 0 1967 160 0 0 chr6 152719737 152720019 -36559535 + AluJo SINE Alu 1 282 -30 35 41 0 0 chr6 152720021 152720070 -36559484 + AT_rich Low_complexity Low_complexity 1 49 0 260 30 0 0 chr6 152721318 152721351 -36558203 - MADE1 DNA Mariner -47 33 1 191 306 42 14 chr6 152722089 152722161 -36557393 + L2 LINE L2 3236 3309 -4 181 379 0 0 chr6 152722356 152722422 -36557132 - L2 LINE L2 -2 3311 3246 339 113 0 0 chr6 152722431 152722455 -36557099 + (CA)n Simple_repeat Simple_repeat 1 77 0 339 113 0 0 chr6 152722455 152722508 -36557046 + (CA)n Simple_repeat Simple_repeat 2 54 0 180 250 0 0 chr6 152722647 152722711 -36556843 + (TA)n Simple_repeat Simple_repeat 1 64 0 183 204 0 0 chr6 152722781 152722835 -36556719 + (TA)n Simple_repeat Simple_repeat 1 54 0 208 268 0 24 chr6 152722847 152722929 -36556625 + (TA)n Simple_repeat Simple_repeat 1 80 0 236 273 209 0 chr6 152723041 152723151 -36556403 + L2 LINE L2 3137 3269 -3 2483 69 0 7 chr6 152723387 152723693 -36555861 + AluY SINE Alu 1 304 -7 235 235 59 24 chr6 152723832 152723917 -36555637 - L1MC4 LINE L1 -1341 6701 6614 225 152 0 0 chr6 152723933 152723979 -36555575 - LTR66 LTR ERVL -171 439 394 215 275 0 50 chr6 152723979 152724059 -36555495 + (TA)n Simple_repeat Simple_repeat 2 77 0 227 200 0 0 chr6 152724060 152724115 -36555439 + L1MC4 LINE L1 6649 6703 -1339 189 175 0 0 chr6 152724198 152724238 -36555316 + (TATG)n Simple_repeat Simple_repeat 2 41 0 1827 146 30 27 chr6 152724451 152724787 -36554767 + MER1B DNA MER1_type 1 337 0 1865 125 31 17 chr6 152724977 152725266 -36554288 + AluSx SINE Alu 1 293 -19 594 224 18 30 chr6 152726196 152726361 -36553193 - LTR33A LTR ERVL -24 499 337 1154 136 16 5 chr6 152726988 152727179 -36552375 - MER1B DNA MER1_type -28 311 119 2192 129 42 22 chr6 152727468 152727825 -36551729 - THE1B LTR MaLR 0 364 1 2067 130 7 0 chr6 152728065 152728365 -36551189 - AluSg SINE Alu -8 302 1 198 0 0 0 chr6 152728496 152728518 -36551036 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chr6 152728566 152728601 -36550953 + AT_rich Low_complexity Low_complexity 1 35 0 2397 152 18 13 chr6 152728601 152729145 -36550409 - L1MA4A LINE L1 -23 6280 5673 1946 134 31 7 chr6 152729145 152729436 -36550118 - AluSx SINE Alu -14 298 1 763 300 70 0 chr6 152729448 152729678 -36549876 - MIR SINE MIR -14 248 3 263 313 12 0 chr6 152729909 152729989 -36549565 - L2 LINE L2 -6 3307 3227 420 252 195 14 chr6 152730007 152730217 -36549337 + MIR SINE MIR 15 262 0 203 338 19 64 chr6 152730557 152730714 -36548840 + MIR3 SINE MIR 44 193 -15 2112 145 23 30 chr6 152731120 152731519 -36548035 - Tigger2a DNA MER2_type -38 396 1 1270 96 24 10 chr6 152731521 152731729 -36547825 - L1MB2 LINE L1 -1 6170 5960 1522 119 24 4 chr6 152731731 152731982 -36547572 - L1MB2 LINE L1 -309 5859 5604 303 113 0 0 chr6 152733536 152733589 -36545965 + (GA)n Simple_repeat Simple_repeat 2 54 0 594 278 83 14 chr6 152733724 152733940 -36545614 + MIR SINE MIR 8 238 -24 228 67 0 0 chr6 152736420 152736450 -36543104 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 24 0 0 0 chr6 152736805 152736829 -36542725 + AT_rich Low_complexity Low_complexity 1 24 0 2290 94 3 3 chr6 152736872 152737179 -36542375 + AluSg SINE Alu 1 307 -3 358 260 35 101 chr6 152737296 152737465 -36542089 + MIR SINE MIR 59 216 -46 6173 73 55 8 chr6 152737878 152739036 -36540518 + L1PA11 LINE L1 4974 6173 -1 4199 160 76 51 chr6 152739260 152739993 -36539561 - L1MA5 LINE L1 -10 6992 6217 2420 80 0 0 chr6 152739993 152740294 -36539260 - AluY SINE Alu -10 301 1 4199 160 76 51 chr6 152740294 152740778 -36538776 - L1MA5 LINE L1 -785 6217 5746 2736 179 2 10 chr6 152740772 152741287 -36538267 - L1MA5 LINE L1 -6334 515 5 * 4922 134 26 8 chr6 152741289 152741665 -36537889 - L1MA4 LINE L1 -119 6181 5813 243 0 0 0 chr6 152741665 152741692 -36537862 + (TG)n Simple_repeat Simple_repeat 2 28 0 4922 134 26 8 chr6 152741692 152742205 -36537349 - L1MA4 LINE L1 -487 5813 5276 426 264 36 132 chr6 152742210 152742490 -36537064 + MIR SINE MIR 9 261 -1 200 274 24 24 chr6 152742537 152742621 -36536933 + GA-rich Low_complexity Low_complexity 4 87 0 681 273 33 12 chr6 152742846 152743059 -36536495 + MIR SINE MIR 17 242 -20 233 244 23 23 chr6 152743215 152743301 -36536253 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 260 277 12 24 chr6 152743400 152743483 -36536071 - MER90 LTR ERV1 -47 528 447 270 0 0 0 chr6 152743787 152743817 -36535737 + (TG)n Simple_repeat Simple_repeat 1 30 0 1636 180 0 4 chr6 152744084 152744356 -36535198 - AluJb SINE Alu 0 312 42 523 289 44 33 chr6 152744731 152744926 -36534628 - MIR SINE MIR -34 228 34 324 217 35 9 chr6 152744928 152745275 -36534279 + (TA)n Simple_repeat Simple_repeat 1 356 0 542 89 11 0 chr6 152745304 152745394 -36534160 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 1457 253 69 22 chr6 152745704 152746087 -36533467 + L1ME3A LINE L1 5584 6002 -168 2470 135 115 31 chr6 152746087 152746607 -36532947 + LTR6A LTR ERV1 1 564 0 1457 253 69 22 chr6 152746607 152746776 -36532778 + L1ME3A LINE L1 6002 6162 -8 1600 158 87 28 chr6 152747276 152747598 -36531956 + MER61A LTR ERV1 3 343 0 288 227 45 23 chr6 152747600 152747688 -36531866 + MER61A-int LTR ERV1 3 92 -5125 2399 105 97 107 chr6 152747945 152748479 -36531075 + MER61A-int LTR ERV1 246 774 -4443 * 14624 81 16 11 chr6 152748475 152750698 -36528856 + MER61A-int LTR ERV1 1320 3600 -1617 5938 120 55 20 chr6 152750697 152751686 -36527868 + MER61A-int LTR ERV1 4194 5216 -1 * 1556 167 94 16 chr6 152751686 152752004 -36527550 + MER61A LTR ERV1 1 343 0 389 303 137 51 chr6 152753120 152753588 -36525966 + L3 LINE CR1 206 713 -864 353 291 52 76 chr6 152753634 152753844 -36525710 + MIR SINE MIR 39 243 -19 457 324 80 17 chr6 152753894 152754132 -36525422 + L3 LINE CR1 787 1039 -538 402 242 0 20 chr6 152754203 152754302 -36525252 + MER5B DNA MER1_type 1 97 -81 525 370 96 16 chr6 152754302 152754689 -36524865 + L3 LINE CR1 1085 1502 -75 1374 163 5 0 chr6 152755953 152756168 -36523386 - AluJo SINE Alu -30 282 67 2147 100 0 0 chr6 152756187 152756498 -36523056 - AluSc SINE Alu 0 311 1 2187 112 0 7 chr6 152757338 152757624 -36521930 + AluSx SINE Alu 1 284 -28 189 74 0 0 chr6 152757634 152757661 -36521893 + (TAA)n Simple_repeat Simple_repeat 1 27 0 843 251 57 0 chr6 152757842 152758053 -36521501 - MER58A DNA MER1_type 0 224 2 2421 200 30 7 chr6 152759898 152760510 -36519044 - LTR65 LTR ERV1 0 669 1 222 351 0 0 chr6 152761028 152761102 -36518452 - MIR3 SINE MIR -43 165 92 249 163 0 0 chr6 152761871 152761920 -36517634 + A-rich Low_complexity Low_complexity 2 50 0 26 30 0 0 chr6 152762309 152762342 -36517212 + AT_rich Low_complexity Low_complexity 1 33 0 319 329 71 6 chr6 152762410 152762580 -36516974 - L2 LINE L2 0 3313 3133 8716 227 75 62 chr6 152762723 152762827 -36516727 - Zaphod DNA AcHobo -137 3894 3793 1956 106 0 0 chr6 152762827 152763082 -36516472 - AluSc SINE Alu -14 295 41 8716 227 75 62 chr6 152763082 152764707 -36514847 - Zaphod DNA AcHobo -238 3793 2190 6345 81 2 0 chr6 152764707 152765999 -36513555 - L1PA10 LINE L1 -6 6162 4889 8716 227 75 62 chr6 152765999 152768077 -36511477 - Zaphod DNA AcHobo -1841 2190 37 272 241 0 0 chr6 152768095 152768153 -36511401 - Zaphod DNA AcHobo -3965 66 9 312 272 56 80 chr6 152769281 152769406 -36510148 + L2 LINE L2 3151 3272 0 1524 213 87 8 chr6 152770311 152770678 -36508876 + MSTD LTR MaLR 1 396 0 23 54 0 0 chr6 152771166 152771203 -36508351 + AT_rich Low_complexity Low_complexity 1 37 0 1654 275 77 45 chr6 152771212 152772531 -36507023 + L1MC4 LINE L1 4316 5703 -459 1736 154 61 10 chr6 152772531 152772824 -36506730 + AluSg SINE Alu 1 308 -2 1654 275 77 45 chr6 152772824 152772945 -36506609 + L1MC4 LINE L1 5703 5819 -343 3305 229 140 97 chr6 152772980 152773936 -36505618 + L1MC4 LINE L1 5880 6794 -1248 2062 134 0 3 chr6 152773936 152774228 -36505326 + AluSg SINE Alu 1 291 -19 3305 229 140 97 chr6 152774228 152775030 -36504524 + L1MC4 LINE L1 6794 7811 -231 2264 127 0 0 chr6 152775030 152775338 -36504216 + AluSg SINE Alu 1 308 -2 3305 229 140 97 chr6 152775338 152775574 -36503980 + L1MC4 LINE L1 7811 8036 -6 181 323 77 0 chr6 152776559 152776624 -36502930 + MIR SINE MIR 58 127 -81 1637 180 24 0 chr6 152776642 152776937 -36502617 - AluJb SINE Alu -10 302 1 180 0 0 0 chr6 152776949 152776969 -36502585 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 346 337 82 46 chr6 152776969 152777275 -36502279 + L3 LINE CR1 1111 1427 -150 7600 57 0 2 chr6 152777384 152778772 -36500782 - L1PA6 LINE L1 -2 6152 4766 551 291 6 6 chr6 152778800 152778965 -36500589 - L3 LINE CR1 -571 1006 842 350 42 21 0 chr6 152779620 152779668 -36499886 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 196 399 19 19 chr6 152780615 152780823 -36498731 - L2 LINE L2 -554 2760 2553 183 283 0 19 chr6 152780961 152781014 -36498540 + L3 LINE CR1 1426 1477 -100 219 310 85 54 chr6 152781036 152781165 -36498389 - L3 LINE CR1 -64 1513 1381 1034 331 139 26 chr6 152781216 152782140 -36497414 - L3 LINE CR1 -319 1258 167 928 176 34 17 chr6 152782438 152782614 -36496940 - MER47A DNA MER2_type -187 179 1 874 130 0 0 chr6 152782651 152782789 -36496765 - L1PA13 LINE L1 -4 6159 6022 345 326 81 7 chr6 152783192 152783421 -36496133 + MIR SINE MIR 4 255 -7 1844 176 77 4 chr6 152785796 152786220 -36493334 + MLT2B1 LTR ERVL 6 507 -8 1169 150 4 115 chr6 152786220 152786390 -36493164 + ERVL-B2 LTR ERVL 1772 1907 -3857 1463 117 0 0 chr6 152786390 152786587 -36492967 - AluSc SINE Alu -7 302 106 1169 150 4 115 chr6 152786587 152786669 -36492885 + ERVL-B2 LTR ERVL 1907 1996 -3768 636 121 11 0 chr6 152786668 152786759 -36492795 + ERVL-B2 LTR ERVL 3289 3380 -2384 * 12785 147 22 1 chr6 152786756 152788737 -36490817 + ERVL-B2 LTR ERVL 3735 5757 -7 2095 200 136 4 chr6 152788737 152789192 -36490362 + MLT2B2 LTR ERVL 1 515 0 498 235 250 25 chr6 152789198 152789398 -36490156 + MIR SINE MIR 12 256 -6 293 109 0 0 chr6 152789596 152789642 -36489912 + L1MC1 LINE L1 6288 6333 0 481 309 26 11 chr6 152791661 152791852 -36487702 - MLT1L LTR MaLR -10 605 412 453 203 22 143 chr6 152791885 152792067 -36487487 - MLT1L LTR MaLR -338 277 118 289 308 87 29 chr6 152792186 152792290 -36487264 + MIR SINE MIR 44 153 -55 2342 80 13 0 chr6 152793028 152793329 -36486225 + AluSp SINE Alu 1 305 -8 180 0 0 0 chr6 152793342 152793362 -36486192 + (TTG)n Simple_repeat Simple_repeat 2 21 0 521 248 71 76 chr6 152793641 152793879 -36485675 + MIR SINE MIR 20 256 -6 968 131 0 0 chr6 152794795 152794925 -36484629 + FLAM_C SINE Alu 2 131 -2 248 374 80 12 chr6 152795482 152795645 -36483909 + MIR3 SINE MIR 30 203 -5 963 171 24 83 chr6 152796281 152796486 -36483068 + MER20 DNA MER1_type 27 219 0 320 289 40 54 chr6 152797122 152797271 -36482283 - L2 LINE L2 0 3313 3167 1396 237 60 96 chr6 152797513 152798471 -36481083 + L2 LINE L2 2368 3277 -36 964 25 64 14 chr6 152798484 152798770 -36480784 + (TAGA)n Simple_repeat Simple_repeat 1 300 0 27 0 0 0 chr6 152798807 152798834 -36480720 + AT_rich Low_complexity Low_complexity 1 27 0 1690 180 20 3 chr6 152798910 152799205 -36480349 - AluJb SINE Alu -12 300 1 201 74 0 0 chr6 152799251 152799278 -36480276 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 275 267 12 35 chr6 152799976 152800062 -36479492 + MLT1H LTR MaLR 152 235 -314 201 133 0 0 chr6 152801238 152801268 -36478286 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 506 137 0 6 chr6 152802120 152802347 -36477207 + AluJo SINE Alu 1 257 -55 261 0 0 0 chr6 152803141 152803170 -36476384 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 200 86 29 0 chr6 152803654 152803689 -36475865 + (AATAG)n Simple_repeat Simple_repeat 3 38 0 308 235 0 0 chr6 152804109 152804177 -36475377 - Charlie8 DNA MER1_type -10 2407 2340 1351 191 46 119 chr6 152804280 152804693 -36474861 + MLT1B LTR MaLR 4 386 -4 2410 86 0 0 chr6 152805737 152806040 -36473514 + AluSx SINE Alu 1 303 -9 1855 273 65 2 chr6 152806348 152807042 -36472512 - L2 LINE L2 -193 3120 2383 275 300 100 18 chr6 152807049 152807159 -36472395 - MIR SINE MIR -120 142 24 442 268 106 6 chr6 152807729 152807908 -36471646 - LTR50 LTR ERVL -582 213 17 352 233 107 27 chr6 152808693 152808843 -36470711 - L2 LINE L2 0 3313 3152 190 272 111 12 chr6 152809174 152809255 -36470299 - L2 LINE L2 -621 2693 2605 204 367 165 0 chr6 152809301 152809459 -36470095 - L2 LINE L2 -710 2604 2421 502 286 46 67 chr6 152810561 152810799 -36468755 + MIR SINE MIR 9 241 -21 197 290 151 11 chr6 152811625 152811718 -36467836 + L2 LINE L2 2715 2820 -494 583 178 191 26 chr6 152811785 152811937 -36467617 - MER5A DNA MER1_type 0 189 13 240 210 145 0 chr6 152811986 152812048 -36467506 - MLT1L LTR MaLR -80 535 465 1117 221 37 14 chr6 152812067 152812284 -36467270 + MER58A DNA MER1_type 1 222 -2 1310 231 88 19 chr6 152812741 152813104 -36466450 - MLT1B LTR MaLR -2 388 1 216 215 161 11 chr6 152813582 152813675 -36465879 - L3b LINE CR1 -195 1388 1282 2702 64 0 0 chr6 152813796 152814122 -36465432 - LTR17 LTR ERV1 -454 326 1 2399 59 0 0 chr6 152814126 152814414 -36465140 - HERV17 LTR ERV1 -4 8622 8335 286 77 0 0 chr6 152814404 152814443 -36465111 - HERV17 LTR ERV1 -1078 7548 7510 * 23388 51 3 10 chr6 152814436 152817190 -36462364 - HERV17 LTR ERV1 -2607 6019 3285 2857 16 0 0 chr6 152817190 152817501 -36462053 - AluYa5 SINE Alu 0 311 1 23388 51 3 10 chr6 152817501 152817571 -36461983 - HERV17 LTR ERV1 -5341 3285 3216 524 216 211 25 chr6 152818393 152818592 -36460962 + MIR SINE MIR 12 247 -15 448 357 7 0 chr6 152818930 152819070 -36460484 - L2 LINE L2 -3 3269 3129 240 317 10 19 chr6 152820001 152820105 -36459449 + MIR SINE MIR 50 152 -56 241 219 73 12 chr6 152820423 152820505 -36459049 + L2 LINE L2 3184 3270 -2 322 331 143 0 chr6 152820593 152820708 -36458846 - L2 LINE L2 -9 3263 3125 2209 177 24 47 chr6 152820708 152821132 -36458422 - MLT2D LTR ERVL 0 414 1 322 331 143 0 chr6 152821132 152821149 -36458405 - L2 LINE L2 -147 3125 3112 390 300 112 49 chr6 152821227 152821450 -36458104 - MIR SINE MIR -6 256 20 486 267 66 13 chr6 152822165 152822349 -36457205 - MIR SINE MIR -58 150 4 1862 150 31 3 chr6 152824240 152824526 -36455028 - AluSx SINE Alu -18 294 1 520 231 31 8 chr6 152824639 152824769 -36454785 - MIR SINE MIR -2 260 128 327 311 44 47 chr6 152825030 152825226 -36454328 - MIR SINE MIR -33 229 37 765 213 59 0 chr6 152825231 152825400 -36454154 + MER5A DNA MER1_type 1 179 -10 1770 164 4 4 chr6 152825780 152826086 -36453468 - AluJo SINE Alu 0 306 1 662 274 32 48 chr6 152826318 152826566 -36452988 + MIR SINE MIR 19 262 0 280 198 37 62 chr6 152826806 152826887 -36452667 - HsTC2 DNA Tc2 -20 1878 1800 180 286 152 9 chr6 152827236 152827348 -36452206 - L2 LINE L2 -19 3294 3167 211 328 45 0 chr6 152827442 152827509 -36452045 - L2 LINE L2 -218 3054 2985 315 49 0 0 chr6 152827703 152827744 -36451810 + (CA)n Simple_repeat Simple_repeat 2 42 0 212 0 36 0 chr6 152827800 152827828 -36451726 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2309 96 6 13 chr6 152827969 152828363 -36451191 + AluSx SINE Alu 1 392 0 2495 64 0 0 chr6 152828595 152828892 -36450662 - AluY SINE Alu -14 297 1 350 151 0 0 chr6 152830229 152830282 -36449272 + Alu SINE Alu 1 53 -255 292 328 66 16 chr6 152830851 152830973 -36448581 - L2 LINE L2 0 3272 3145 1578 120 85 0 chr6 152831954 152832213 -36447341 + L1MA8 LINE L1 6007 6287 -4 489 253 77 52 chr6 152833618 152833812 -36445742 - MIR SINE MIR -63 199 1 21 0 0 0 chr6 152833854 152833875 -36445679 + AT_rich Low_complexity Low_complexity 1 21 0 349 301 72 45 chr6 152834044 152834379 -36445175 + LTR33 LTR ERVL 3 346 -175 255 347 67 46 chr6 152834376 152834748 -36444806 - LTR16C LTR ERVL -14 477 98 * 357 264 62 49 chr6 152834855 152834999 -36444555 + LTR33 LTR ERVL 371 516 -5 2064 200 42 38 chr6 152835115 152835565 -36443989 + MLT1C LTR MaLR 7 458 -9 391 330 73 10 chr6 152836448 152836654 -36442900 + MIR SINE MIR 23 241 -21 882 165 27 69 chr6 152836801 152836989 -36442565 - AluJb SINE Alu -130 182 3 419 240 211 29 chr6 152837001 152837209 -36442345 - MIR SINE MIR -2 260 15 1950 105 61 31 chr6 152837263 152837557 -36441997 + AluSx SINE Alu 1 303 -9 849 129 0 0 chr6 152837563 152837679 -36441875 - FLAM_C SINE Alu -17 116 1 1073 263 80 16 chr6 152837826 152838191 -36441363 + L2 LINE L2 1811 2198 -1116 234 0 0 0 chr6 152838220 152838246 -36441308 + (A)n Simple_repeat Simple_repeat 1 26 0 1833 162 0 25 chr6 152838336 152838650 -36440904 + AluJb SINE Alu 1 306 -6 354 232 71 0 chr6 152839063 152839162 -36440392 - MLT1C LTR MaLR -361 106 1 216 0 0 0 chr6 152839278 152839302 -36440252 + (CA)n Simple_repeat Simple_repeat 1 24 0 481 219 138 44 chr6 152839302 152839462 -36440092 + MER112 DNA MER1_type 86 260 0 25 31 0 0 chr6 152840829 152840861 -36438693 + AT_rich Low_complexity Low_complexity 1 32 0 245 292 148 50 chr6 152841835 152842037 -36437517 - MLT1J LTR MaLR -19 492 271 2445 66 0 10 chr6 152842089 152842390 -36437164 + AluY SINE Alu 1 298 -13 23 0 0 0 chr6 152842687 152842710 -36436844 + AT_rich Low_complexity Low_complexity 1 23 0 1744 198 144 46 chr6 152842714 152843173 -36436381 + MLT1D LTR MaLR 2 505 0 389 215 57 95 chr6 152843296 152843454 -36436100 - MIR SINE MIR -1 261 110 300 196 0 0 chr6 152843953 152844004 -36435550 + Tigger6 DNA MER2_type 4 54 -1029 863 163 6 52 chr6 152845612 152845784 -36433770 + AluJo SINE Alu 126 289 -23 189 0 0 0 chr6 152845790 152845811 -36433743 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 431 181 0 86 chr6 152846164 152846269 -36433285 - FLAM_A SINE Alu -3 139 44 330 270 0 0 chr6 152846277 152846366 -36433188 - L1MA9 LINE L1 -38 6274 6186 409 312 35 17 chr6 152846525 152846698 -36432856 - MIR SINE MIR -30 232 57 270 312 64 6 chr6 152847504 152847661 -36431893 + L1ME LINE L1 5726 5891 -230 344 263 180 55 chr6 152849817 152850035 -36429519 + MIR SINE MIR 11 260 -2 253 364 33 53 chr6 152850012 152850163 -36429391 - L2 LINE L2 -7 3306 3159 * 202 208 21 21 chr6 152850163 152850211 -36429343 + GA-rich Low_complexity Low_complexity 2 49 0 1303 278 79 55 chr6 152850324 152851093 -36428461 - L2 LINE L2 -264 3049 2265 2062 116 3 10 chr6 152851110 152851403 -36428151 + AluSc SINE Alu 19 309 0 1106 149 11 0 chr6 152851737 152851911 -36427643 - AluJo SINE Alu -3 309 134 2365 182 14 27 chr6 152852654 152853099 -36426455 + MER82 DNA MER2_type 1 439 -214 1905 221 25 3 chr6 152853809 152854175 -36425379 - MLT1A2 LTR MaLR 0 374 1 1920 137 0 13 chr6 152854726 152855058 -36424496 - AluJo SINE Alu 0 312 1 180 371 52 0 chr6 152855775 152855872 -36423682 - MER5A DNA MER1_type -81 108 7 1603 167 4 4 chr6 152857017 152857274 -36422280 + AluJb SINE Alu 1 257 -55 975 117 0 0 chr6 152857322 152857450 -36422104 - AluJo SINE Alu -174 128 1 1280 220 167 14 chr6 152857555 152857991 -36421563 - MLT1D LTR MaLR -2 503 1 209 237 34 17 chr6 152859413 152859472 -36420082 - MIR SINE MIR -122 140 81 22 80 0 0 chr6 152860416 152860466 -36419088 + AT_rich Low_complexity Low_complexity 1 50 0 245 220 17 110 chr6 152860582 152860630 -36418924 + MIR SINE MIR 106 157 -105 2073 134 0 0 chr6 152860630 152860945 -36418609 + AluSx SINE Alu 1 315 0 245 220 17 110 chr6 152860945 152861013 -36418541 + MIR SINE MIR 157 212 -50 332 307 0 0 chr6 152861375 152861450 -36418104 + MIR SINE MIR 27 101 -161 447 345 91 0 chr6 152861623 152861788 -36417766 - MER91B DNA MER1_type -10 180 1 189 302 31 83 chr6 152861788 152861884 -36417670 + MIR3 SINE MIR 111 201 -7 750 213 80 125 chr6 152862275 152862675 -36416879 + MER34C LTR ERV1 188 569 -16 298 248 59 30 chr6 152863557 152863692 -36415862 - MIR SINE MIR -63 145 19 181 184 61 0 chr6 152864040 152864089 -36415465 - L2 LINE L2 -10 3262 3211 873 244 103 0 chr6 152864528 152864762 -36414792 + MIR SINE MIR 5 262 0 1149 180 86 110 chr6 152865128 152865511 -36414043 - MLT1A2 LTR MaLR 0 374 1 288 0 0 0 chr6 152866323 152866355 -36413199 + (TG)n Simple_repeat Simple_repeat 2 33 0 897 189 223 45 chr6 152868038 152868397 -36411157 - LTR37A LTR ERV1 0 426 4 890 161 8 0 chr6 152868464 152868594 -36410960 + FLAM_A SINE Alu 1 131 -2 2014 89 0 4 chr6 152868635 152868893 -36410661 + AluSc SINE Alu 50 306 -3 264 100 0 0 chr6 152869332 152869372 -36410182 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 2022 140 0 16 chr6 152869478 152869785 -36409769 - AluSx SINE Alu -10 302 1 185 271 0 34 chr6 152869905 152869964 -36409590 + MIR SINE MIR 130 186 -76 2111 110 3 19 chr6 152870446 152870755 -36408799 - AluSx SINE Alu -8 304 1 429 293 73 24 chr6 152870920 152871084 -36408470 + L3 LINE CR1 1306 1477 -100 1815 145 35 0 chr6 152871298 152871587 -36407967 + AluJb SINE Alu 1 299 -13 2153 126 0 7 chr6 152872995 152873304 -36406250 - AluSx SINE Alu -5 307 1 667 224 20 27 chr6 152873397 152873544 -36406010 - MER45A DNA AcHobo -23 155 10 245 341 0 0 chr6 152873914 152873999 -36405555 - L2 LINE L2 0 3272 3188 1434 215 102 48 chr6 152874461 152874903 -36404651 + MER31B LTR ERV1 1 466 0 798 268 36 5 chr6 152875931 152876151 -36403403 + MER102a DNA MER1_type 81 307 -23 1861 129 50 0 chr6 152876332 152876610 -36402944 + AluSx SINE Alu 1 292 -20 2375 104 0 0 chr6 152876613 152876912 -36402642 + AluSx SINE Alu 1 299 -13 1016 133 138 0 chr6 152876941 152877122 -36402432 + AluJo SINE Alu 84 289 -23 657 96 0 0 chr6 152879451 152879545 -36400009 + (TGGA)n Simple_repeat Simple_repeat 1 94 0 814 153 23 8 chr6 152880431 152880562 -36398992 - AluJb SINE Alu -179 133 1 443 298 44 6 chr6 152884597 152884755 -36394799 - MIR3 SINE MIR -9 199 36 27 29 0 0 chr6 152886387 152886421 -36393133 + AT_rich Low_complexity Low_complexity 1 34 0 818 193 60 0 chr6 152886589 152886739 -36392815 - AluJb SINE Alu -17 295 137 604 259 47 42 chr6 152886774 152886986 -36392568 - MIR SINE MIR -38 224 12 21 0 0 0 chr6 152893425 152893446 -36386108 + AT_rich Low_complexity Low_complexity 1 21 0 219 254 28 14 chr6 152893741 152893812 -36385742 + GA-rich Low_complexity Low_complexity 2 73 0 223 265 51 51 chr6 152893962 152894060 -36385494 - MER5A DNA MER1_type -85 104 7 659 249 54 30 chr6 152894070 152894403 -36385151 - L1MC5 LINE L1 -24 7937 7597 933 227 9 51 chr6 152894463 152894739 -36384815 + L1ME LINE L1 5576 5822 -348 390 162 206 0 chr6 152894741 152894809 -36384745 + FRAM SINE Alu 18 99 -67 189 0 0 0 chr6 152894814 152894835 -36384719 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 6992 57 7 0 chr6 152894857 152895525 -36384029 - L1PA7 LINE L1 -4 6150 5488 2201 118 0 13 chr6 152895525 152895831 -36383723 - AluSg SINE Alu -7 303 2 6992 57 7 0 chr6 152895831 152896680 -36382874 - L1PA7 LINE L1 -666 5488 4637 1756 68 21 0 chr6 152896697 152897022 -36382532 - L1P3 LINE L1 -683 5489 5160 27102 120 11 76 chr6 152897026 152901584 -36377970 - L1P3 LINE L1 -1511 4635 426 243 0 0 0 chr6 152901584 152901611 -36377943 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 27102 120 11 76 chr6 152901611 152902001 -36377553 - L1P3 LINE L1 -5720 426 12 1873 164 4 0 chr6 152902011 152902291 -36377263 - AluSx SINE Alu -31 281 1 353 188 23 62 chr6 152902317 152902445 -36377109 - L1MC5 LINE L1 -476 7485 7363 2007 108 4 0 chr6 152903156 152903415 -36376139 - AluSx SINE Alu -52 260 1 273 262 19 10 chr6 152903658 152903761 -36375793 + Charlie7 DNA MER1_type 57 160 -2452 1497 228 127 36 chr6 152903842 152904513 -36375041 + Charlie7 DNA MER1_type 1874 2605 -7 1615 147 15 12 chr6 152904532 152904791 -36374763 + AluSx SINE Alu 42 301 -11 675 176 10 40 chr6 152904927 152905145 -36374409 - Charlie1 DNA MER1_type -14 2747 132 365 355 0 8 chr6 152905238 152905362 -36374192 + MIR SINE MIR 20 142 -120 331 292 99 25 chr6 152905448 152905609 -36373945 - MER5B DNA MER1_type -4 174 2 2131 117 13 0 chr6 152906592 152906890 -36372664 + AluSq SINE Alu 1 302 -11 282 335 187 62 chr6 152958149 152958343 -36321211 + L2 LINE L2 2959 3194 -78 1922 139 24 14 chr6 152958343 152958638 -36320916 + AluSx SINE Alu 5 302 -10 282 335 187 62 chr6 152958638 152958700 -36320854 + L2 LINE L2 3194 3247 -25 2159 110 0 10 chr6 152959002 152959316 -36320238 + AluSx SINE Alu 1 312 0 535 302 142 10 chr6 152959790 152960105 -36319449 - L1ME3 LINE L1 -211 5951 5594 346 276 182 41 chr6 152960146 152960486 -36319068 - L1ME3 LINE L1 -816 5330 4943 866 48 0 0 chr6 152960786 152960890 -36318664 - L1PA5 LINE L1 0 6154 6051 655 259 185 45 chr6 152961229 152961581 -36317973 + L2 LINE L2 2912 3312 -1 23 78 0 0 chr6 152961695 152961746 -36317808 + AT_rich Low_complexity Low_complexity 1 51 0 204 97 0 0 chr6 152962122 152962153 -36317401 + (A)n Simple_repeat Simple_repeat 1 31 0 5327 122 55 20 chr6 152962153 152963016 -36316538 - MER4D LTR ERV1 -8 895 3 22 0 0 0 chr6 152963101 152963123 -36316431 + AT_rich Low_complexity Low_complexity 1 22 0 1552 184 53 0 chr6 152964069 152964352 -36315202 - AluJo SINE Alu -14 298 1 312 342 26 13 chr6 152965281 152965433 -36314121 + L2 LINE L2 1130 1283 -2031 365 296 82 0 chr6 152965485 152965620 -36313934 + MIR SINE MIR 117 262 0 289 277 262 0 chr6 152966460 152966601 -36312953 + MER5B DNA MER1_type 1 178 0 1118 137 44 6 chr6 152966672 152966854 -36312700 - MER5A DNA MER1_type 0 189 1 2434 148 52 59 chr6 152966898 152967206 -36312348 + L1MC3 LINE L1 7268 7572 -213 2233 123 0 0 chr6 152967206 152967508 -36312046 + AluSx SINE Alu 1 302 -10 2434 148 52 59 chr6 152967508 152967721 -36311833 + L1MC3 LINE L1 7572 7785 0 204 40 0 0 chr6 152967721 152967746 -36311808 + (A)n Simple_repeat Simple_repeat 1 25 0 188 131 49 16 chr6 152967966 152968027 -36311527 + (TA)n Simple_repeat Simple_repeat 2 64 0 2332 67 0 0 chr6 152968399 152968710 -36310844 - AluY SINE Alu 0 311 1 484 242 33 8 chr6 152969425 152969545 -36310009 - MIR SINE MIR -138 124 2 279 0 0 0 chr6 152969869 152969900 -36309654 + (A)n Simple_repeat Simple_repeat 1 31 0 2073 145 3 6 chr6 152973105 152973416 -36306138 - AluSx SINE Alu -2 310 1 670 25 0 0 chr6 152973496 152973575 -36305979 + (TTTC)n Simple_repeat Simple_repeat 2 136 0 2167 110 0 0 chr6 152973575 152973856 -36305698 - AluSg SINE Alu -1 359 1 496 240 24 40 chr6 152975022 152975057 -36304497 + MER82 DNA MER2_type 11 45 -608 3517 140 36 7 chr6 152975057 152975606 -36303948 + MER34B LTR ERV1 1 565 0 496 240 24 40 chr6 152975606 152975695 -36303859 + MER82 DNA MER2_type 45 133 -520 3176 141 30 32 chr6 152975700 152976259 -36303295 - L1MC1 LINE L1 0 6333 5776 382 263 88 18 chr6 152976260 152976374 -36303180 + MLT1B LTR MaLR 2 123 -267 879 199 33 58 chr6 152976442 152976718 -36302836 - AluSp SINE Alu -44 269 1 237 33 0 0 chr6 152976722 152976752 -36302802 + (TCCA)n Simple_repeat Simple_repeat 2 31 0 8014 32 1 0 chr6 152977301 152978698 -36300856 - L1PA4 LINE L1 0 6155 4754 2596 40 3 0 chr6 152978789 152979092 -36300462 + AluY SINE Alu 1 304 -7 396 290 111 48 chr6 152979768 152980020 -36299534 - L2 LINE L2 -5 3308 3041 791 230 44 5 chr6 152980155 152980359 -36299195 - MIR SINE MIR -10 252 41 212 382 22 29 chr6 152980360 152980496 -36299058 - L2 LINE L2 -377 2937 2803 2253 116 3 0 chr6 152981332 152981642 -36297912 - AluSq SINE Alu -2 311 1 447 254 82 68 chr6 152982123 152982343 -36297211 - L2 LINE L2 -10 3303 3081 2355 68 0 31 chr6 152982525 152982846 -36296708 + AluY SINE Alu 1 311 0 290 153 17 0 chr6 152983968 152984027 -36295527 + (CA)n Simple_repeat Simple_repeat 1 60 0 721 294 93 48 chr6 152984290 152984729 -36294825 + L1ME4a LINE L1 5296 5754 -367 216 214 0 0 chr6 152984737 152984779 -36294775 - L2 LINE L2 -16 3297 3256 1640 127 12 0 chr6 152984898 152985150 -36294404 + AluSq SINE Alu 56 310 -3 2541 58 0 0 chr6 152985707 152986002 -36293552 - AluSp SINE Alu -18 295 1 258 32 0 0 chr6 152986005 152986036 -36293518 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 23 33 0 0 chr6 152986499 152986529 -36293025 + AT_rich Low_complexity Low_complexity 1 30 0 201 364 16 16 chr6 152986589 152986718 -36292836 + L2 LINE L2 2576 2704 -610 183 368 84 26 chr6 152986989 152987144 -36292410 + L2 LINE L2 2930 3093 -179 246 262 233 0 chr6 152987757 152987860 -36291694 - L2 LINE L2 -9 3263 3137 1888 151 3 0 chr6 152987869 152988160 -36291394 + AluSx SINE Alu 1 292 -20 843 184 46 6 chr6 152988693 152988867 -36290687 + L1MA4 LINE L1 6116 6296 -4 1811 144 87 4 chr6 152988976 152989253 -36290301 - AluSx SINE Alu -12 300 1 203 222 111 0 chr6 152989987 152990041 -36289513 + L2 LINE L2 3244 3303 -10 22 0 0 0 chr6 152990485 152990507 -36289047 + AT_rich Low_complexity Low_complexity 1 22 0 414 205 79 120 chr6 152990556 152990873 -36288681 + L1ME4a LINE L1 5808 6111 -10 320 340 0 0 chr6 152990927 152991027 -36288527 + L1 LINE L1 3607 3706 -2440 225 262 16 0 chr6 152991190 152991251 -36288303 + L1 LINE L1 4764 4825 -1321 * 260 223 91 14 chr6 152991246 152991336 -36288218 - L1M3 LINE L1 -842 5462 5373 253 335 38 16 chr6 152991378 152991563 -36287991 + L1 LINE L1 4882 5070 -1076 624 183 95 22 chr6 152992349 152992383 -36287171 - AluJb SINE Alu -164 148 118 239 0 32 0 chr6 152992383 152992414 -36287140 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 624 183 95 22 chr6 152992414 152992516 -36287038 - AluJb SINE Alu -194 118 2 21 0 0 0 chr6 152993299 152993320 -36286234 + AT_rich Low_complexity Low_complexity 1 21 0 232 186 209 0 chr6 152994413 152994499 -36285055 - L1ME4a LINE L1 -4 6117 6014 437 256 96 18 chr6 152994647 152994866 -36284688 - L1ME4a LINE L1 -177 5944 5709 322 172 0 0 chr6 152994949 152995007 -36284547 - L1ME4a LINE L1 -537 5584 5527 243 61 0 0 chr6 152995029 152995062 -36284492 + (TC)n Simple_repeat Simple_repeat 2 34 0 315 0 0 0 chr6 152995062 152995097 -36284457 + (CA)n Simple_repeat Simple_repeat 1 35 0 364 317 25 8 chr6 152995663 152995783 -36283771 - MER5B DNA MER1_type -3 175 54 209 313 35 17 chr6 152996111 152996226 -36283328 + GA-rich Low_complexity Low_complexity 3 119 0 291 286 159 25 chr6 152996948 152997193 -36282361 - MLT1L LTR MaLR -182 433 156 1649 174 24 24 chr6 152997692 152997990 -36281564 - AluJo SINE Alu -14 298 1 5728 163 50 8 chr6 152999386 153001071 -36278483 - L1PA16 LINE L1 -1 6165 4379 243 0 0 0 chr6 153001071 153001098 -36278456 + (TG)n Simple_repeat Simple_repeat 2 28 0 5728 163 50 8 chr6 153001098 153001365 -36278189 - L1PA16 LINE L1 -1787 4379 4125 2014 152 0 3 chr6 153001837 153002140 -36277414 - AluSx SINE Alu -10 302 1 234 252 120 102 chr6 153002244 153002276 -36277278 + MLT1L LTR MaLR 209 239 -272 3004 88 8 3 chr6 153002276 153002649 -36276905 - THE1C LTR MaLR 0 375 1 234 252 120 102 chr6 153002649 153002884 -36276670 + MLT1L LTR MaLR 239 417 -94 253 308 60 71 chr6 153003190 153003372 -36276182 + MIR SINE MIR 9 188 -74 1921 146 29 0 chr6 153003385 153003666 -36275888 + AluSx SINE Alu 1 289 -23 1269 209 52 10 chr6 153003709 153004092 -36275462 + L1MC2 LINE L1 4943 5341 -805 5532 149 24 3 chr6 153004228 153005112 -36274442 + L1MC2 LINE L1 5435 6336 -8 1066 157 8 77 chr6 153005252 153005487 -36274067 - MER20 DNA MER1_type 0 219 1 571 113 28 0 chr6 153005735 153005841 -36273713 + CT-rich Low_complexity Low_complexity 4 112 0 21 36 0 0 chr6 153006335 153006363 -36273191 + AT_rich Low_complexity Low_complexity 1 28 0 539 308 6 33 chr6 153006693 153006875 -36272679 - Zaphod DNA AcHobo -3815 216 40 281 229 83 64 chr6 153006964 153007073 -36272481 + MER5B DNA MER1_type 9 119 -59 186 271 100 29 chr6 153007993 153008063 -36271491 + MIR SINE MIR 33 107 -155 474 314 163 12 chr6 153008070 153008401 -36271153 - L2 LINE L2 0 3313 2933 313 319 150 40 chr6 153008426 153008878 -36270676 - L2 LINE L2 -2227 1087 586 288 333 15 68 chr6 153008959 153009091 -36270463 + MIR SINE MIR 14 139 -69 620 190 133 6 chr6 153009176 153009334 -36270220 - MER5B DNA MER1_type 0 178 1 290 258 175 0 chr6 153009377 153009474 -36270080 + L2 LINE L2 3188 3301 -12 203 138 0 0 chr6 153009932 153009961 -36269593 + (ATG)n Simple_repeat Simple_repeat 1 29 0 215 217 99 25 chr6 153010375 153010456 -36269098 + MIR SINE MIR 35 120 -94 1125 215 13 21 chr6 153011508 153011745 -36267809 + MER96B DNA MER1_type? 1 235 -182 320 244 83 78 chr6 153011936 153012129 -36267425 - MIR SINE MIR -6 256 63 258 207 18 144 chr6 153012296 153012407 -36267147 - MIR3 SINE MIR -17 191 95 287 216 98 52 chr6 153015493 153015646 -36263908 - L1ME4a LINE L1 -1 6120 5961 205 149 0 85 chr6 153015846 153015881 -36263673 - MIR SINE MIR -108 154 122 2173 117 0 0 chr6 153015881 153016171 -36263383 + AluSc SINE Alu 17 306 -3 205 149 0 85 chr6 153016171 153016182 -36263372 - MIR SINE MIR -140 122 112 465 180 181 9 chr6 153016441 153016569 -36262985 + L1ME3 LINE L1 5494 5648 -514 845 255 91 19 chr6 153016629 153016837 -36262717 + MER58A DNA MER1_type 1 223 -1 725 247 24 0 chr6 153016849 153017019 -36262535 + L1ME3 LINE L1 5659 5832 -330 862 144 103 7 chr6 153017020 153017166 -36262388 - AluSg/x SINE Alu -15 294 135 2306 97 0 3 chr6 153017167 153017467 -36262087 - AluSg SINE Alu -11 299 1 692 238 110 16 chr6 153017468 153017761 -36261793 + L1ME3 LINE L1 5825 6170 0 824 292 68 35 chr6 153018463 153018829 -36260725 + L2 LINE L2 2936 3313 0 338 283 75 28 chr6 153018894 153019206 -36260348 - L1ME LINE L1 -549 5572 5213 872 133 0 22 chr6 153020872 153021007 -36258547 - FLAM_C SINE Alu -3 140 9 2299 149 67 5 chr6 153021420 153021823 -36257731 - L1MA9 LINE L1 0 7731 7304 13229 180 48 25 chr6 153021927 153025594 -36253960 - L1MA9 LINE L1 -676 7055 3313 565 228 40 27 chr6 153025604 153025753 -36253801 + L1M4c LINE L1 1686 1836 -4548 * 598 294 16 16 chr6 153025738 153026044 -36253510 - L1MA9 LINE L1 -4283 3282 2977 2090 90 79 10 chr6 153026048 153026338 -36253216 - AluY SINE Alu -1 310 1 1023 294 62 12 chr6 153027347 153027752 -36251802 - MLT1J LTR MaLR -2 509 85 472 330 25 25 chr6 153028251 153028448 -36251106 + MIR SINE MIR 54 250 -12 21 36 0 0 chr6 153028731 153028759 -36250795 + AT_rich Low_complexity Low_complexity 1 28 0 1595 146 229 6 chr6 153029082 153029418 -36250136 - MLT1C LTR MaLR -52 415 5 1117 219 43 73 chr6 153030191 153030245 -36249309 - MER46C DNA MER2_type -12 326 272 2241 94 0 10 chr6 153030245 153030543 -36249011 + AluY SINE Alu 1 295 -16 1117 219 43 73 chr6 153030543 153030817 -36248737 - MER46C DNA MER2_type -66 272 8 363 269 34 8 chr6 153030878 153030997 -36248557 - MER5A DNA MER1_type -67 122 1 325 267 147 0 chr6 153032407 153032523 -36247031 + L2 LINE L2 3181 3313 0 1074 281 132 47 chr6 153032809 153033951 -36245603 + L2 LINE L2 2068 3313 0 332 247 0 0 chr6 153033964 153034045 -36245509 + MIR SINE MIR 118 198 -64 257 216 39 20 chr6 153034065 153034167 -36245387 + (TTA)n Simple_repeat Simple_repeat 3 106 0 360 0 0 0 chr6 153034647 153034687 -36244867 + (CA)n Simple_repeat Simple_repeat 2 41 0 1038 200 0 54 chr6 153035674 153035914 -36243640 + AluJo SINE Alu 85 311 -1 215 143 41 20 chr6 153037507 153037556 -36241998 + MIR SINE MIR 115 164 -98 1066 49 11 38 chr6 153037889 153038074 -36241480 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 228 135 0 0 chr6 153038074 153038111 -36241443 + (TC)n Simple_repeat Simple_repeat 1 37 0 1552 99 27 9 chr6 153038111 153038332 -36241222 - AluSg/x SINE Alu -2 310 86 2638 133 37 2 chr6 153040844 153041251 -36238303 - MSTA LTR MaLR -5 423 3 994 192 0 82 chr6 153041254 153041473 -36238081 - MER3 DNA MER1_type 0 209 9 384 22 0 0 chr6 153042091 153042136 -36237418 + (TG)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr6 153043973 153043993 -36235561 + (TG)n Simple_repeat Simple_repeat 2 21 0 539 220 54 65 chr6 153044005 153044173 -36235381 + MER20 DNA MER1_type 4 169 -50 359 234 27 72 chr6 153044312 153044423 -36235131 + MIR SINE MIR 14 119 -143 949 153 28 83 chr6 153044423 153044456 -36235098 - MER67C LTR ERV1 0 710 677 2373 125 19 27 chr6 153044456 153044823 -36234731 - THE1B LTR MaLR 0 364 1 949 153 28 83 chr6 153044823 153044905 -36234649 - MER67C LTR ERV1 -33 677 592 1909 159 10 10 chr6 153044905 153045213 -36234341 + AluSg SINE Alu 1 308 -2 949 153 28 83 chr6 153045213 153045312 -36234242 - MER67C LTR ERV1 -118 592 507 954 198 154 17 chr6 153045316 153045609 -36233945 - MER67C LTR ERV1 -375 335 3 2306 89 3 10 chr6 153045646 153045960 -36233594 + AluSq SINE Alu 1 312 -1 225 0 0 0 chr6 153045969 153045994 -36233560 + (CAA)n Simple_repeat Simple_repeat 2 26 0 476 164 90 74 chr6 153045994 153046116 -36233438 + MIR SINE MIR 137 260 -2 848 197 202 37 chr6 153046141 153046563 -36232991 + MLT1E3 LTR MaLR 2 546 -78 215 301 53 71 chr6 153047055 153047168 -36232386 - MER5A DNA MER1_type -41 148 38 524 297 87 29 chr6 153047254 153047530 -36232024 - LTR33 LTR ERVL -3 518 227 276 278 21 10 chr6 153047580 153047677 -36231877 - LTR33 LTR ERVL -380 141 44 2312 202 60 16 chr6 153049004 153049355 -36230199 - MER82 DNA MER2_type 0 653 272 1129 200 52 124 chr6 153049355 153049775 -36229779 + MLT1B LTR MaLR 1 390 0 2312 202 60 16 chr6 153049775 153049923 -36229631 - MER82 DNA MER2_type -381 272 132 898 172 20 37 chr6 153049940 153050026 -36229528 + L1MC/D LINE L1 5183 5269 -913 2639 116 83 5 chr6 153050026 153050423 -36229131 + MSTA LTR MaLR 1 428 0 898 172 20 37 chr6 153050423 153050594 -36228960 + L1MC/D LINE L1 5269 5439 -743 2205 117 3 0 chr6 153050596 153050887 -36228667 + AluSx SINE Alu 1 292 -20 374 172 0 0 chr6 153050993 153051075 -36228479 + AluSp/q SINE Alu 232 313 0 2209 123 27 3 chr6 153051076 153051408 -36228146 + L1MC/D LINE L1 5433 5772 -561 1002 237 22 13 chr6 153051416 153051648 -36227906 - MLT1B LTR MaLR -8 382 149 942 113 0 15 chr6 153051650 153051783 -36227771 + AluSq/x SINE Alu 1 131 -182 309 229 39 58 chr6 153051883 153052027 -36227527 - MIR SINE MIR -63 145 10 237 260 103 103 chr6 153052054 153052258 -36227296 - MIR SINE MIR -12 250 47 336 252 99 38 chr6 153053582 153053713 -36225841 - L2 LINE L2 -9 3304 3166 2341 157 24 43 chr6 153054305 153054629 -36224925 - MSTB2 LTR MaLR 0 457 143 2606 110 8 55 chr6 153054629 153054968 -36224586 + THE1B LTR MaLR 1 322 -42 2267 127 0 3 chr6 153054968 153055282 -36224272 - AluSp SINE Alu 0 313 1 2606 110 8 55 chr6 153055282 153055324 -36224230 + THE1B LTR MaLR 322 364 0 2341 157 24 43 chr6 153055324 153055465 -36224089 - MSTB2 LTR MaLR -314 143 1 303 28 0 0 chr6 153055492 153055528 -36224026 + (CA)n Simple_repeat Simple_repeat 2 37 0 593 104 0 10 chr6 153055709 153055805 -36223749 + (GGAA)n Simple_repeat Simple_repeat 1 95 0 301 241 51 0 chr6 153055805 153055884 -36223670 - L2 LINE L2 -1812 1502 1420 182 262 106 85 chr6 153055922 153056063 -36223491 - MER5A DNA MER1_type -6 183 40 * 225 248 97 83 chr6 153055946 153056091 -36223463 + MER5A DNA MER1_type 43 189 0 223 277 116 45 chr6 153056694 153056849 -36222705 - L2 LINE L2 -1 3312 3147 21 0 0 0 chr6 153057213 153057234 -36222320 + AT_rich Low_complexity Low_complexity 1 21 0 14793 191 25 15 chr6 153058141 153063629 -36215925 - L1PB1 LINE L1 0 6867 1341 498 318 196 25 chr6 153064161 153064768 -36214786 - L2 LINE L2 -798 2516 1806 356 310 181 26 chr6 153064824 153065166 -36214388 - L2 LINE L2 0 3313 2919 4172 54 7 2 chr6 153065293 153066166 -36213388 + LTR5 LTR ERVK 1 969 0 319 325 67 97 chr6 153066236 153066670 -36212884 - L2 LINE L2 -17 3255 2835 224 266 64 9 chr6 153066959 153067068 -36212486 - L2 LINE L2 -817 2497 2383 353 357 87 24 chr6 153067744 153068209 -36211345 + L2 LINE L2 2778 3268 -45 27 49 0 0 chr6 153069098 153069139 -36210415 + AT_rich Low_complexity Low_complexity 1 41 0 1994 109 3 40 chr6 153069139 153069442 -36210112 - AluSx SINE Alu -20 292 1 186 71 0 0 chr6 153070278 153070306 -36209248 + (A)n Simple_repeat Simple_repeat 1 28 0 509 294 86 61 chr6 153071066 153071311 -36208243 + MIR SINE MIR 8 258 -4 339 282 155 35 chr6 153071655 153071829 -36207725 - MIR SINE MIR -34 228 34 1325 176 57 0 chr6 153071991 153072235 -36207319 + MER58B DNA MER1_type 56 313 -28 200 299 0 0 chr6 153072253 153072320 -36207234 + MER5A DNA MER1_type 4 70 -119 261 278 53 98 chr6 153072779 153072912 -36206642 - L2 LINE L2 0 3272 3146 285 332 224 0 chr6 153073933 153074129 -36205425 + MIR SINE MIR 8 247 -15 294 230 170 10 chr6 153074668 153074768 -36204786 - MIR SINE MIR -13 249 134 382 280 50 79 chr6 153074797 153075173 -36204381 + L1P LINE L1 4458 4843 -1303 2068 133 7 0 chr6 153075173 153075475 -36204079 + AluSx SINE Alu 1 304 -8 382 280 50 79 chr6 153075475 153075695 -36203859 + L1P LINE L1 4843 5068 -1078 25 0 0 0 chr6 153075695 153075720 -36203834 + AT_rich Low_complexity Low_complexity 1 25 0 382 280 50 79 chr6 153075720 153076018 -36203536 + L1P LINE L1 5068 5334 -812 1861 172 0 3 chr6 153076056 153076352 -36203202 + AluJo SINE Alu 1 295 -17 531 214 97 19 chr6 153076366 153076520 -36203034 + L1MC4a LINE L1 5698 5863 -1945 180 333 21 11 chr6 153076563 153076656 -36202898 - MIR SINE MIR -150 112 19 2334 122 11 22 chr6 153076975 153077343 -36202211 + THE1B LTR MaLR 1 364 0 461 173 25 0 chr6 153077869 153077950 -36201604 - AluS SINE Alu -228 84 2 2310 110 3 0 chr6 153077970 153078280 -36201274 - AluSq SINE Alu -2 311 1 231 36 0 0 chr6 153078406 153078434 -36201120 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 261 263 50 20 chr6 153078507 153078606 -36200948 + MIR SINE MIR 32 133 -75 595 148 61 0 chr6 153079039 153079154 -36200400 - MIR SINE MIR 0 262 141 266 242 31 39 chr6 153079463 153079591 -36199963 - MIR SINE MIR -57 205 79 1861 140 49 36 chr6 153079626 153079934 -36199620 + AluSx SINE Alu 1 312 0 21 0 0 0 chr6 153080071 153080092 -36199462 + AT_rich Low_complexity Low_complexity 1 21 0 385 308 0 8 chr6 153080161 153080291 -36199263 + MIR3 SINE MIR 49 177 -31 732 179 0 22 chr6 153082764 153082898 -36196656 - FLAM_A SINE Alu 0 142 12 2699 33 0 3 chr6 153082918 153083225 -36196329 + AluY SINE Alu 1 306 -5 223 60 40 60 chr6 153085907 153085957 -36193597 + (CGGGG)n Simple_repeat Simple_repeat 5 53 0 642 89 0 0 chr6 153088189 153088279 -36191275 + (TGGA)n Simple_repeat Simple_repeat 1 90 0 814 153 23 8 chr6 153089165 153089296 -36190258 - AluJb SINE Alu -179 133 1 451 291 44 6 chr6 153093331 153093489 -36186065 - MIR3 SINE MIR -9 199 36 27 29 0 0 chr6 153095119 153095153 -36184401 + AT_rich Low_complexity Low_complexity 1 34 0 818 193 60 0 chr6 153095321 153095471 -36184083 - AluJb SINE Alu -17 295 137 601 259 47 42 chr6 153095506 153095718 -36183836 - MIR SINE MIR -38 224 12 21 0 0 0 chr6 153102154 153102175 -36177379 + AT_rich Low_complexity Low_complexity 1 21 0 219 254 28 14 chr6 153102470 153102541 -36177013 + GA-rich Low_complexity Low_complexity 2 73 0 218 278 52 41 chr6 153102691 153102788 -36176766 - MER5A DNA MER1_type -85 104 7 659 249 54 30 chr6 153102798 153103131 -36176423 - L1MC5 LINE L1 -24 7937 7597 940 219 10 56 chr6 153103191 153103468 -36176086 + L1ME LINE L1 5576 5822 -348 390 162 206 0 chr6 153103470 153103538 -36176016 + FRAM SINE Alu 18 99 -67 189 0 0 0 chr6 153103543 153103564 -36175990 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 6992 57 7 0 chr6 153103586 153104254 -36175300 - L1PA7 LINE L1 -4 6150 5488 2216 114 0 13 chr6 153104254 153104560 -36174994 - AluSg SINE Alu -7 303 2 6992 57 7 0 chr6 153104560 153105409 -36174145 - L1PA7 LINE L1 -666 5488 4637 1756 65 21 0 chr6 153105426 153105751 -36173803 - L1P3 LINE L1 -683 5489 5160 25724 132 11 78 chr6 153105755 153110316 -36169238 - L1P3 LINE L1 -1511 4635 426 243 0 0 0 chr6 153110316 153110343 -36169211 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 25724 132 11 78 chr6 153110343 153110733 -36168821 - L1P3 LINE L1 -5720 426 12 1873 164 4 0 chr6 153110743 153111023 -36168531 - AluSx SINE Alu -31 281 1 353 188 23 62 chr6 153111048 153111176 -36168378 - L1MC5 LINE L1 -476 7485 7363 2007 108 4 0 chr6 153111887 153112146 -36167408 - AluSx SINE Alu -52 260 1 273 262 19 10 chr6 153112389 153112492 -36167062 + Charlie7 DNA MER1_type 57 160 -2452 1509 226 127 36 chr6 153112573 153113244 -36166310 + Charlie7 DNA MER1_type 1874 2605 -7 1615 147 15 12 chr6 153113263 153113522 -36166032 + AluSx SINE Alu 42 301 -11 675 176 10 40 chr6 153113658 153113876 -36165678 - Charlie1 DNA MER1_type -14 2747 132 365 355 0 8 chr6 153113969 153114093 -36165461 + MIR SINE MIR 20 142 -120 331 292 99 25 chr6 153114179 153114340 -36165214 - MER5B DNA MER1_type -4 174 2 2229 92 0 3 chr6 153165577 153166038 -36113516 - AluSc SINE Alu 0 460 1 21 0 0 0 chr6 153166103 153166124 -36113430 + AT_rich Low_complexity Low_complexity 1 21 0 232 302 0 0 chr6 153166768 153166831 -36112723 - L3 LINE CR1 -23 1554 1492 1060 167 57 24 chr6 153169559 153169769 -36109785 + MER20 DNA MER1_type 1 217 -2 401 238 9 19 chr6 153170043 153170148 -36109406 + L2 LINE L2 3210 3313 0 1149 214 0 24 chr6 153170207 153170459 -36109095 - MIR SINE MIR 0 262 17 1977 94 8 8 chr6 153171026 153171291 -36108263 + AluSc SINE Alu 17 281 -28 360 0 0 0 chr6 153171291 153171331 -36108223 + (CA)n Simple_repeat Simple_repeat 2 41 0 202 232 36 0 chr6 153171750 153171806 -36107748 + L2 LINE L2 3025 3082 -190 503 69 14 0 chr6 153172358 153172430 -36107124 + (TA)n Simple_repeat Simple_repeat 2 74 0 541 324 71 0 chr6 153173743 153173968 -36105586 - MIR SINE MIR -18 244 4 1819 180 0 0 chr6 153174942 153175231 -36104323 + AluJb SINE Alu 1 289 -23 2269 112 0 3 chr6 153175236 153175539 -36104015 + AluSx SINE Alu 1 302 -10 315 323 6 48 chr6 153175638 153175740 -36103814 - MER5B DNA MER1_type -18 160 66 2352 75 0 35 chr6 153175740 153176059 -36103495 - AluY SINE Alu -1 310 3 315 323 6 48 chr6 153176059 153176123 -36103431 - MER5B DNA MER1_type -112 66 1 1982 165 0 3 chr6 153176700 153177009 -36102545 - AluSx SINE Alu -4 308 1 6604 180 22 30 chr6 153177899 153178982 -36100572 - L1MB2 LINE L1 -2 6169 5079 1468 93 5 0 chr6 153178982 153179196 -36100358 + L1PA13 LINE L1 5941 6155 -8 6604 180 22 30 chr6 153179196 153179737 -36099817 - L1MB2 LINE L1 -1092 5079 4535 2415 94 0 3 chr6 153179737 153180045 -36099509 - AluY SINE Alu -4 307 1 6604 180 22 30 chr6 153180045 153180831 -36098723 - L1MB2 LINE L1 -1636 4535 3781 2013 129 3 29 chr6 153181084 153181395 -36098159 + AluSg1 SINE Alu 5 307 -2 262 320 55 23 chr6 153181594 153181722 -36097832 - MIR SINE MIR -61 147 16 1358 305 150 30 chr6 153181843 153182649 -36096905 + L2 LINE L2 2003 2711 -602 2208 127 48 20 chr6 153182649 153183003 -36096551 - THE1B LTR MaLR 0 364 1 11841 92 7 2 chr6 153183003 153184575 -36094979 - THE1B-int LTR MaLR 0 1580 1 2233 124 48 20 chr6 153184575 153184929 -36094625 - THE1B LTR MaLR 0 364 1 1358 305 150 30 chr6 153184929 153185273 -36094281 + L2 LINE L2 2710 3295 -18 336 111 0 0 chr6 153185390 153185444 -36094110 + (TC)n Simple_repeat Simple_repeat 1 54 0 211 207 37 37 chr6 153185680 153185762 -36093792 + (TA)n Simple_repeat Simple_repeat 1 82 0 5716 18 3 0 chr6 153185873 153186533 -36093021 - L1PA3 LINE L1 0 6155 5494 11173 59 3 5 chr6 153186533 153188048 -36091506 - L1P LINE L1 -4029 2117 606 628 335 62 17 chr6 153188155 153188668 -36090886 + HAL1 LINE L1 299 906 -1601 17784 145 31 11 chr6 153188722 153194606 -36084948 + L1PB1 LINE L1 1 6036 -831 2425 51 0 32 chr6 153194606 153194917 -36084637 - AluY SINE Alu -10 301 1 17784 145 31 11 chr6 153194917 153195755 -36083799 + L1PB1 LINE L1 6036 6856 -11 213 156 62 0 chr6 153195863 153195927 -36083627 + (TTAA)n Simple_repeat Simple_repeat 4 71 0 6973 107 13 115 chr6 153195970 153196106 -36083448 + HSMAR2 DNA Mariner 15 163 -1139 2300 123 0 3 chr6 153196106 153196415 -36083139 + AluSg SINE Alu 1 308 -2 6973 107 13 115 chr6 153196415 153197661 -36081893 + HSMAR2 DNA Mariner 163 1247 -55 2033 110 6 54 chr6 153197661 153197978 -36081576 - AluSg SINE Alu -8 302 1 6973 107 13 115 chr6 153197978 153198028 -36081526 + HSMAR2 DNA Mariner 1247 1301 -1 578 284 88 25 chr6 153198030 153198133 -36081421 + HAL1 LINE L1 1078 1173 -1334 1967 175 3 0 chr6 153198133 153198442 -36081112 + AluSx SINE Alu 1 310 -2 578 284 88 25 chr6 153198442 153198860 -36080694 + HAL1 LINE L1 1173 1632 -875 1145 203 93 102 chr6 153198894 153199357 -36080197 - MLT1C LTR MaLR 0 467 9 620 297 38 0 chr6 153199366 153199578 -36079976 + HAL1 LINE L1 1663 1882 -625 679 220 12 0 chr6 153199632 153199805 -36079749 + GA-rich Low_complexity Low_complexity 2 176 0 2431 70 3 10 chr6 153199805 153200118 -36079436 + AluY SINE Alu 1 311 0 896 249 45 109 chr6 153200154 153200821 -36078733 + HAL1 LINE L1 1874 2497 -10 270 109 0 0 chr6 153201488 153201534 -36078020 - Alu SINE Alu 0 302 257 676 325 27 3 chr6 153201551 153202052 -36077502 - L1ME LINE L1 -391 5771 5255 186 43 0 0 chr6 153202058 153202081 -36077473 + (CA)n Simple_repeat Simple_repeat 2 24 0 14614 134 24 9 chr6 153202082 153204464 -36075090 + Tigger1 DNA MER2_type 2 2418 0 1011 161 0 0 chr6 153204478 153204658 -36074896 + (TA)n Simple_repeat Simple_repeat 1 180 0 338 276 46 0 chr6 153204658 153204745 -36074809 - L1MC4 LINE L1 -1340 6702 6612 313 346 148 0 chr6 153204890 153205052 -36074502 - MIR SINE MIR -21 241 56 225 0 0 0 chr6 153205453 153205478 -36074076 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 734 274 18 47 chr6 153206127 153206381 -36073173 + MIR SINE MIR 9 251 -11 318 50 0 0 chr6 153206464 153206504 -36073050 + (TG)n Simple_repeat Simple_repeat 2 41 0 663 74 0 1 chr6 153206964 153207064 -36072490 + L1MA4 LINE L1 6156 6254 -46 424 140 65 0 chr6 153207064 153207147 -36072407 + L1MA6 LINE L1 6200 6298 -2 2072 164 0 0 chr6 153207818 153208130 -36071424 + AluJo SINE Alu 1 312 0 372 279 244 5 chr6 153208197 153208398 -36071156 - MIR SINE MIR -13 249 1 343 119 0 131 chr6 153208879 153208963 -36070591 - MLT2B1 LTR ERVL 0 520 443 49 71 0 0 chr6 153208978 153209076 -36070478 + AT_rich Low_complexity Low_complexity 1 98 0 1267 202 89 50 chr6 153209076 153209477 -36070077 - MLT2B1 LTR ERVL -34 380 8 122 53 0 13 chr6 153209645 153209870 -36069684 + AT_rich Low_complexity Low_complexity 1 222 0 1921 126 62 32 chr6 153209889 153210230 -36069324 + THE1B LTR MaLR 14 364 0 11969 89 2 11 chr6 153210230 153210989 -36068565 + THE1B-int LTR MaLR 1 765 -815 2291 114 3 0 chr6 153210989 153211295 -36068259 + AluSx SINE Alu 1 307 -5 11969 89 2 11 chr6 153211295 153212129 -36067425 + THE1B-int LTR MaLR 765 1580 0 2088 117 43 57 chr6 153212129 153212287 -36067267 + THE1B LTR MaLR 1 160 -204 2133 121 7 10 chr6 153212287 153212585 -36066969 - AluSq SINE Alu -16 297 1 2088 117 43 57 chr6 153212585 153212795 -36066759 + THE1B LTR MaLR 160 364 0 19363 185 21 19 chr6 153212800 153217209 -36062345 + L1P3 LINE L1 815 5240 -1221 900 145 0 0 chr6 153217209 153217333 -36062221 + AluSg/x SINE Alu 164 290 -20 4093 87 19 3 chr6 153217333 153217906 -36061648 + L1PA11 LINE L1 5593 6174 0 49 60 0 0 chr6 153217940 153218024 -36061530 + AT_rich Low_complexity Low_complexity 1 84 0 662 99 27 9 chr6 153218025 153218136 -36061418 - L1MB4 LINE L1 -3 6177 6065 211 200 0 0 chr6 153218268 153218308 -36061246 + (TG)n Simple_repeat Simple_repeat 1 40 0 2319 92 0 0 chr6 153218432 153218726 -36060828 - AluSg SINE Alu -16 294 1 647 291 112 42 chr6 153218820 153219177 -36060377 + LTR16C LTR ERVL 96 477 -14 367 352 14 14 chr6 153219491 153219710 -36059844 + ERVL LTR ERVL 362 580 -4416 260 274 14 0 chr6 153220123 153220196 -36059358 + ERVL LTR ERVL 4317 4390 -1374 1592 203 111 24 chr6 153220227 153220686 -36058868 + MER34 LTR ERV1 18 516 -26 499 265 25 36 chr6 153220978 153221174 -36058380 + ERVL LTR ERVL 4875 5068 -696 418 324 74 64 chr6 153221448 153221619 -36057935 + LTR16C LTR ERVL 52 220 -271 2230 126 0 0 chr6 153221619 153221920 -36057634 + AluSx SINE Alu 1 301 -11 418 324 74 64 chr6 153221920 153222153 -36057401 + LTR16C LTR ERVL 220 460 -31 417 280 114 8 chr6 153222321 153222453 -36057101 + MIR SINE MIR 9 154 -108 1034 173 6 28 chr6 153222455 153222654 -36056900 + AluJb SINE Alu 115 309 0 24 32 0 0 chr6 153225199 153225230 -36054324 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr6 153225360 153225393 -36054161 + AT_rich Low_complexity Low_complexity 1 33 0 349 287 167 0 chr6 153225398 153225548 -36054006 - MIR3 SINE MIR -9 199 25 208 244 0 0 chr6 153229023 153229064 -36050490 + (CATA)n Simple_repeat Simple_repeat 3 43 0 23 0 0 0 chr6 153230103 153230126 -36049428 + AT_rich Low_complexity Low_complexity 1 23 0 3480 123 32 20 chr6 153230453 153231015 -36048539 - L1MB4 LINE L1 0 6180 5612 2215 126 3 0 chr6 153231058 153231360 -36048194 - AluSx SINE Alu -9 303 1 189 194 0 0 chr6 153233751 153233787 -36045767 - MIR SINE MIR -59 203 168 22 0 0 0 chr6 153233798 153233820 -36045734 + AT_rich Low_complexity Low_complexity 1 22 0 691 105 57 0 chr6 153233820 153233925 -36045629 - L1PB3 LINE L1 0 6154 6044 453 344 31 19 chr6 153233925 153234076 -36045478 - MIR SINE MIR -81 181 26 2333 146 25 7 chr6 153234076 153234480 -36045074 - L1MB7 LINE L1 -15 6169 5759 396 292 99 41 chr6 153235408 153235579 -36043975 + MER5A DNA MER1_type 8 188 -1 303 71 0 0 chr6 153236882 153236924 -36042630 + (TG)n Simple_repeat Simple_repeat 1 42 0 2075 108 14 3 chr6 153237430 153237717 -36041837 + AluSx SINE Alu 1 290 -22 188 329 37 0 chr6 153238812 153238894 -36040660 + L3 LINE CR1 1481 1565 -12 2498 48 0 0 chr6 153239157 153239448 -36040106 + AluY SINE Alu 1 291 -20 2147 107 3 7 chr6 153239609 153239907 -36039647 - AluSx SINE Alu -15 297 1 1172 90 119 11 chr6 153239990 153240167 -36039387 - Charlie3 DNA MER1_type -8 2702 2507 186 43 0 0 chr6 153243551 153243574 -36035980 + (CGG)n Simple_repeat Simple_repeat 2 24 0 228 122 0 0 chr6 153243804 153243845 -36035709 + (CGGAG)n Simple_repeat Simple_repeat 5 45 0 27 62 0 0 chr6 153244095 153244143 -36035411 + GC_rich Low_complexity Low_complexity 1 48 0 361 323 47 47 chr6 153244445 153244677 -36034877 + L2 LINE L2 3036 3267 -5 650 289 85 0 chr6 153245753 153245954 -36033600 + MIR SINE MIR 24 241 -21 321 276 31 0 chr6 153246233 153246331 -36033223 - L1ME3 LINE L1 0 6162 6062 37 0 0 0 chr6 153246397 153246434 -36033120 + AT_rich Low_complexity Low_complexity 1 37 0 632 253 31 0 chr6 153246510 153246672 -36032882 - MIR SINE MIR -82 180 14 284 326 72 17 chr6 153247275 153247456 -36032098 + L2 LINE L2 3118 3308 -5 672 309 93 10 chr6 153247667 153247958 -36031596 - L3 LINE CR1 -351 1226 912 1609 177 43 7 chr6 153248998 153249297 -36030257 + AluJb SINE Alu 1 310 -2 2265 115 0 0 chr6 153249946 153250242 -36029312 + AluSx SINE Alu 1 296 -16 817 228 72 17 chr6 153250242 153250343 -36029211 + MER63A DNA MER1_type 20 114 -1574 391 146 0 101 chr6 153250343 153250432 -36029122 + MADE1 DNA Mariner 1 80 0 817 228 72 17 chr6 153250432 153250510 -36029044 + MER63A DNA MER1_type 114 209 -1 215 320 31 31 chr6 153250659 153250756 -36028798 + L2 LINE L2 1859 1955 -1359 520 266 31 47 chr6 153250823 153251015 -36028539 - MER90 LTR ERV1 -17 558 370 722 231 61 26 chr6 153251028 153251257 -36028297 - MER90 LTR ERV1 -336 239 3 443 335 90 69 chr6 153251267 153252435 -36027119 + L2 LINE L2 2063 3270 -2 1709 141 30 39 chr6 153252754 153253059 -36026495 - AluJb SINE Alu -10 302 1 285 247 89 32 chr6 153253256 153253386 -36026168 - MIR SINE MIR -28 234 97 698 291 66 12 chr6 153253665 153253909 -36025645 - MIR SINE MIR 0 262 6 687 283 72 13 chr6 153253925 153254162 -36025392 - MIR SINE MIR 0 262 12 1695 98 16 127 chr6 153254898 153255213 -36024341 + AluSx SINE Alu 28 307 -5 5998 98 47 8 chr6 153255301 153255823 -36023731 - L1PA12 LINE L1 0 6168 5597 2475 101 48 22 chr6 153255823 153256178 -36023376 + THE1B LTR MaLR 1 364 0 5998 98 47 8 chr6 153256178 153256566 -36022988 - L1PA12 LINE L1 -571 5597 5226 836 184 38 6 chr6 153257562 153257720 -36021834 + MLT1A1 LTR MaLR 1 163 -202 432 327 36 0 chr6 153257893 153258061 -36021493 - MIR SINE MIR -2 260 87 396 323 83 8 chr6 153258924 153259057 -36020497 + MIR3 SINE MIR 20 162 -46 1043 174 11 5 chr6 153259292 153259476 -36020078 - MER115 DNA AcHobo 0 693 509 732 97 0 0 chr6 153259490 153259593 -36019961 - L1 LINE L1 -883 5263 5161 410 85 63 2 chr6 153259591 153259662 -36019892 + L1P LINE L1 3622 3695 -2451 * 534 262 47 23 chr6 153259673 153260042 -36019512 - MER115 DNA AcHobo -268 425 17 297 255 56 31 chr6 153260381 153260542 -36019012 + L1ME4a LINE L1 5945 6109 -12 6301 100 0 0 chr6 153260547 153261501 -36018053 - L1PA14 LINE L1 -17 6144 5160 8287 164 7 0 chr6 153261501 153262918 -36016636 + L1P LINE L1 3625 5051 -1095 205 253 48 36 chr6 153264097 153264180 -36015374 - MER5A DNA MER1_type -25 164 81 362 253 0 13 chr6 153264425 153264504 -36015050 + MER81 DNA DNA 5 82 -32 1876 185 62 32 chr6 153264653 153265091 -36014463 - MLT1C LTR MaLR 0 467 17 393 156 26 13 chr6 153265523 153265600 -36013954 + MSTB LTR MaLR 1 78 -348 7206 143 19 3 chr6 153265600 153266719 -36012835 + L1M1 LINE L1 34 1170 -6395 2580 139 0 0 chr6 153266718 153267105 -36012449 - MSTA-int LTR MaLR -1264 387 1 * 2917 127 24 0 chr6 153267105 153267523 -36012031 - MSTA LTR MaLR 0 428 1 9577 164 23 15 chr6 153267523 153268007 -36011547 - L1 LINE L1 -2050 5515 5036 2449 91 0 0 chr6 153268007 153268315 -36011239 - AluSx SINE Alu -4 308 1 9577 164 23 15 chr6 153268315 153270283 -36009271 - L1 LINE L1 -2529 5036 3040 6217 143 27 18 chr6 153270285 153271679 -36007875 + L1MA3 LINE L1 4724 6136 -169 2414 81 0 7 chr6 153271679 153271986 -36007568 + AluY SINE Alu 7 311 0 6217 143 27 18 chr6 153271986 153272134 -36007420 + L1MA3 LINE L1 6136 6281 -24 2345 148 34 7 chr6 153272134 153272542 -36007012 + MSTB LTR MaLR 18 426 0 310 246 0 0 chr6 153272576 153272641 -36006913 - MIR SINE MIR -48 214 150 273 285 85 46 chr6 153273912 153274042 -36005512 + MIR3 SINE MIR 10 144 -64 2494 77 0 0 chr6 153274063 153274361 -36005193 - AluSc SINE Alu -11 298 1 472 286 106 33 chr6 153274923 153275196 -36004358 - L2 LINE L2 0 3313 3021 296 331 41 18 chr6 153275248 153275417 -36004137 - L2 LINE L2 -411 2903 2731 256 293 60 17 chr6 153275645 153275761 -36003793 + L3 LINE CR1 573 693 -884 3550 165 44 2 chr6 153275874 153276606 -36002948 + L1ME1 LINE L1 5180 5945 -233 994 128 14 0 chr6 153276615 153276756 -36002798 - MLT2B2 LTR ERVL -355 160 18 441 211 11 11 chr6 153276756 153276851 -36002703 + L1M4 LINE L1 4831 4925 -1221 662 230 76 29 chr6 153276857 153277031 -36002523 + L1ME1 LINE L1 5992 6176 -2 578 328 113 62 chr6 153277032 153277713 -36001841 + L3 LINE CR1 839 1554 -23 2364 108 0 0 chr6 153277767 153278072 -36001482 + AluSx SINE Alu 3 307 -5 577 270 87 36 chr6 153278145 153278501 -36001053 - L1ME4a LINE L1 -4 6117 5744 735 279 116 84 chr6 153278673 153279521 -36000033 - L2 LINE L2 -107 3206 2342 1736 167 21 7 chr6 153280263 153280551 -35999003 + AluJo SINE Alu 13 304 -8 22 35 0 0 chr6 153280985 153281014 -35998540 + AT_rich Low_complexity Low_complexity 1 29 0 2250 111 50 36 chr6 153281304 153281663 -35997891 + THE1B LTR MaLR 1 364 0 341 301 78 19 chr6 153282724 153282827 -35996727 - L2 LINE L2 0 3272 3164 225 204 20 0 chr6 153282940 153282989 -35996565 + GA-rich Low_complexity Low_complexity 1 50 0 335 338 72 14 chr6 153283004 153283211 -35996343 - L2 LINE L2 -1159 2155 1937 195 366 30 22 chr6 153283303 153283437 -35996117 + L2 LINE L2 2956 3090 -182 2158 111 10 3 chr6 153283837 153284134 -35995420 + AluSx SINE Alu 1 299 -13 1142 140 0 0 chr6 153284134 153284305 -35995249 + AluSg/x SINE Alu 134 304 -8 306 0 0 0 chr6 153284464 153284498 -35995056 + (TG)n Simple_repeat Simple_repeat 1 34 0 1598 147 3 39 chr6 153284498 153284783 -35994771 - AluJo SINE Alu -33 279 5 1151 273 75 45 chr6 153284840 153285136 -35994418 - L1ME3A LINE L1 -219 5951 5665 2414 104 0 0 chr6 153285136 153285445 -35994109 - AluSc SINE Alu 0 309 1 1151 273 75 45 chr6 153285445 153285775 -35993779 - L1ME3A LINE L1 -505 5665 5306 592 240 142 65 chr6 153285776 153286163 -35993391 - L1ME3A LINE L1 -1631 4515 4099 180 111 0 0 chr6 153286309 153286336 -35993218 + (GAA)n Simple_repeat Simple_repeat 1 27 0 312 27 0 0 chr6 153286995 153287032 -35992522 + (CA)n Simple_repeat Simple_repeat 2 38 0 257 305 84 35 chr6 153287200 153287426 -35992128 + L1MC/D LINE L1 5367 5603 -518 456 200 70 9 chr6 153287533 153287648 -35991906 - HsTC2 DNA Tc2 -3 1895 1774 9795 137 52 22 chr6 153287657 153288899 -35990655 - L1MA5 LINE L1 -6 6294 5090 284 83 0 0 chr6 153288899 153288935 -35990619 + U2 snRNA snRNA 1 36 -152 9795 137 52 22 chr6 153288935 153290250 -35989304 - L1MA5 LINE L1 -1210 5090 3637 467 293 86 5 chr6 153290255 153290453 -35989101 + L1MC/D LINE L1 5607 5820 -1988 212 162 0 0 chr6 153290532 153290569 -35988985 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 249 284 68 40 chr6 153290835 153291011 -35988543 - L1ME LINE L1 -5887 183 3 317 207 124 66 chr6 153292035 153292156 -35987398 - MER112 DNA MER1_type -8 252 125 333 223 15 115 chr6 153294751 153294881 -35984673 - MER112 DNA MER1_type -137 123 7 201 271 0 14 chr6 153295219 153295289 -35984265 + (TA)n Simple_repeat Simple_repeat 1 69 0 2277 96 3 13 chr6 153295396 153295710 -35983844 - AluSx SINE Alu 0 312 2 827 178 0 0 chr6 153295770 153295899 -35983655 - FLAM_C SINE Alu -12 131 3 621 290 115 38 chr6 153295905 153296357 -35983197 - L1ME4a LINE L1 -296 5825 5339 350 316 92 22 chr6 153296602 153296874 -35982680 - L1ME4a LINE L1 -925 5221 4931 380 301 155 29 chr6 153297192 153297670 -35981884 + L2 LINE L2 2168 2705 -609 377 264 104 109 chr6 153298085 153298460 -35981094 + L1M2 LINE L1 736 1108 -5741 24 0 0 0 chr6 153298460 153298484 -35981070 + GC_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr6 153298526 153298565 -35980989 + GC_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr6 153298764 153298795 -35980759 + GC_rich Low_complexity Low_complexity 1 31 0 185 308 26 39 chr6 153300921 153300999 -35978555 + L2 LINE L2 2898 2974 -339 449 226 58 15 chr6 153302814 153302951 -35976603 - L1ME4a LINE L1 -1 6120 5978 1021 341 91 30 chr6 153303481 153304512 -35975042 + L2 LINE L2 1763 2856 -458 206 347 0 0 chr6 153304561 153304633 -35974921 + L2 LINE L2 2857 2928 -344 * 638 274 128 51 chr6 153304630 153305255 -35974299 - L2 LINE L2 -1 3312 2555 220 284 37 62 chr6 153305448 153305529 -35974025 + L2 LINE L2 3193 3271 -42 383 272 25 96 chr6 153305569 153305808 -35973746 - MIR SINE MIR -36 226 3 2173 141 77 21 chr6 153307366 153307741 -35971813 - MSTD LTR MaLR 0 396 1 759 234 115 45 chr6 153308165 153308552 -35971002 - L1ME4a LINE L1 -35 6086 5675 792 305 30 0 chr6 153308778 153309040 -35970514 + Charlie2 DNA MER1_type 13 282 -2500 2009 216 184 28 chr6 153309086 153309945 -35969609 + Charlie2 DNA MER1_type 1861 2853 -9 540 106 0 24 chr6 153310100 153310185 -35969369 - L1 LINE L1 -3682 2464 2382 342 0 0 0 chr6 153311042 153311080 -35968474 + (A)n Simple_repeat Simple_repeat 1 38 0 5350 192 42 23 chr6 153312283 153312754 -35966800 - L1 LINE L1 -3464 3384 2923 2344 94 0 3 chr6 153312754 153313053 -35966501 - AluSg SINE Alu -12 298 1 5350 192 42 23 chr6 153313053 153313630 -35965924 - L1 LINE L1 -3925 2923 2358 1861 163 3 0 chr6 153313630 153313839 -35965715 - AluJb SINE Alu 0 332 120 258 32 0 0 chr6 153313839 153313870 -35965684 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1861 163 3 0 chr6 153313870 153313991 -35965563 - AluJb SINE Alu -212 120 1 5350 192 42 23 chr6 153313991 153314741 -35964813 - L1 LINE L1 -4490 2358 1546 206 284 172 26 chr6 153314993 153315109 -35964445 + L2 LINE L2 2967 3099 -173 1835 164 7 16 chr6 153316370 153316675 -35962879 - AluJo SINE Alu 0 312 11 2007 141 7 13 chr6 153318009 153318314 -35961240 - AluSx SINE Alu -9 303 1 199 377 113 9 chr6 153320187 153320293 -35959261 - L2 LINE L2 -46 3226 3110 828 133 123 20 chr6 153320614 153320817 -35958737 - Charlie1 DNA MER1_type 0 2761 2538 304 292 91 26 chr6 153321774 153321928 -35957626 + MLT1L LTR MaLR 352 515 -100 511 333 94 4 chr6 153322416 153322650 -35956904 - MIR SINE MIR 0 262 8 272 267 52 35 chr6 153322822 153322938 -35956616 - MLT1J LTR MaLR -8 503 386 253 326 31 39 chr6 153322922 153323051 -35956503 - MLT1L LTR MaLR -173 442 315 * 2470 90 3 0 chr6 153323475 153323787 -35955767 - AluSp SINE Alu 0 313 1 327 333 52 7 chr6 153325909 153326044 -35953510 - MIR SINE MIR -93 169 29 377 222 90 28 chr6 153326095 153326239 -35953315 - L1ME4a LINE L1 -191 5930 5778 1856 161 6 19 chr6 153326370 153326686 -35952868 + AluJb SINE Alu 1 312 0 291 303 148 0 chr6 153327527 153327682 -35951872 + MIR SINE MIR 53 230 -32 486 249 85 18 chr6 153327797 153327962 -35951592 + MIR SINE MIR 75 250 -12 429 321 188 40 chr6 153328003 153328355 -35951199 + L2 LINE L2 2004 2407 -907 237 217 0 0 chr6 153328542 153328588 -35950966 - MIR SINE MIR -1 261 216 678 267 69 101 chr6 153328661 153328779 -35950775 + MER115 DNA AcHobo 111 231 -462 2141 107 10 3 chr6 153328779 153329069 -35950485 + AluSq SINE Alu 1 292 -21 678 267 69 101 chr6 153329069 153329268 -35950286 + MER115 DNA AcHobo 231 418 -275 358 300 80 7 chr6 153329332 153329482 -35950072 - MIR SINE MIR -70 192 32 564 336 103 32 chr6 153329512 153330123 -35949431 + L2 LINE L2 2667 3310 -3 2354 81 20 0 chr6 153330564 153330859 -35948695 + AluSx SINE Alu 1 301 -11 2411 99 0 3 chr6 153331563 153331875 -35947679 - AluSx SINE Alu 0 312 2 489 285 108 42 chr6 153331879 153332212 -35947342 - L1ME4a LINE L1 -2 6119 5765 339 315 14 0 chr6 153332220 153332363 -35947191 - L1ME4a LINE L1 -401 5720 5576 228 67 0 0 chr6 153332567 153332597 -35946957 + (A)n Simple_repeat Simple_repeat 1 30 0 216 282 43 26 chr6 153332750 153332790 -35946764 + MIR SINE MIR 110 148 -114 6812 122 62 9 chr6 153332790 153333395 -35946159 - Tigger3b DNA MER2_type -1797 1231 660 2433 84 3 0 chr6 153333395 153333705 -35945849 - AluSp SINE Alu -2 311 1 6812 122 62 9 chr6 153333705 153334268 -35945286 - Tigger3b DNA MER2_type -2368 660 1 216 282 43 26 chr6 153334268 153334344 -35945210 + MIR SINE MIR 148 228 -34 225 248 83 25 chr6 153334418 153334539 -35945015 - L1ME4a LINE L1 -1 6120 5993 383 145 40 0 chr6 153334730 153334806 -35944748 + MER116 DNA Mariner 2 80 0 284 206 103 15 chr6 153334834 153334902 -35944652 + L2 LINE L2 3197 3270 -43 805 142 0 0 chr6 153335535 153335648 -35943906 + AluJb SINE Alu 6 118 -194 310 298 24 0 chr6 153335672 153335756 -35943798 + MIR SINE MIR 41 126 -136 3737 191 1 0 chr6 153336047 153336811 -35942743 - L1PB1 LINE L1 -1592 4554 3790 * 5705 147 7 2 chr6 153336808 153338389 -35941165 + L1PB1 LINE L1 4552 6137 -14 363 105 0 0 chr6 153339438 153339495 -35940059 + (CA)n Simple_repeat Simple_repeat 2 58 0 222 37 0 0 chr6 153339723 153339750 -35939804 + (TG)n Simple_repeat Simple_repeat 2 28 0 432 285 134 17 chr6 153339825 153339997 -35939557 + MIR SINE MIR 20 211 -51 285 260 80 30 chr6 153340033 153340133 -35939421 + L2 LINE L2 3207 3311 -2 2102 121 3 7 chr6 153340215 153340513 -35939041 - AluSc SINE Alu -12 297 1 2400 84 7 3 chr6 153340629 153340937 -35938617 + AluSq SINE Alu 1 309 -4 968 244 14 0 chr6 153341005 153341218 -35938336 + MER58A DNA MER1_type 9 224 0 278 341 85 12 chr6 153341230 153341418 -35938136 - MIR3 SINE MIR -54 154 7 795 276 269 29 chr6 153345047 153345702 -35933852 + L3 LINE CR1 708 1519 -58 2259 92 3 0 chr6 153346026 153346319 -35933235 - AluSg SINE Alu -16 294 1 205 314 0 0 chr6 153347423 153347474 -35932080 + MIR SINE MIR 91 141 -67 1011 275 8 0 chr6 153347548 153347784 -35931770 + MIR SINE MIR 15 252 -10 230 305 12 12 chr6 153347817 153347899 -35931655 + MER5A DNA MER1_type 93 174 -15 201 304 0 0 chr6 153347911 153347967 -35931587 + MIR3 SINE MIR 151 206 -2 699 156 73 0 chr6 153348639 153348818 -35930736 - L1MA8 LINE L1 -3 6288 6097 1499 159 17 48 chr6 153348830 153348956 -35930598 + AluJb SINE Alu 13 141 -171 5057 42 24 13 chr6 153348956 153349591 -35929963 + L1PA6 LINE L1 5508 6149 -5 2386 67 0 0 chr6 153349596 153349879 -35929675 + AluY SINE Alu 18 300 -11 1499 159 17 48 chr6 153349879 153350036 -35929518 + AluJb SINE Alu 145 293 -19 275 208 0 52 chr6 153350036 153350113 -35929441 - L1MA6 LINE L1 -192 6108 6036 * 935 176 19 0 chr6 153350111 153350301 -35929253 + L1MA6 LINE L1 5848 6053 -250 210 254 164 15 chr6 153352089 153352156 -35927398 - MIR SINE MIR -168 94 18 423 0 0 0 chr6 153352414 153352461 -35927093 + (TG)n Simple_repeat Simple_repeat 1 47 0 204 40 0 0 chr6 153352460 153352485 -35927069 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 2123 97 23 16 chr6 153352537 153352846 -35926708 - AluSp SINE Alu -2 311 1 419 220 33 22 chr6 153353905 153353996 -35925558 - L2 LINE L2 -2 3311 3220 457 129 331 8 chr6 153354817 153354941 -35924613 + MIR SINE MIR 5 168 -94 204 40 0 0 chr6 153356361 153356386 -35923168 + (TG)n Simple_repeat Simple_repeat 2 26 0 1431 184 77 33 chr6 153356576 153356875 -35922679 - AluJb SINE Alu 0 312 1 24 53 0 0 chr6 153356974 153357012 -35922542 + AT_rich Low_complexity Low_complexity 1 38 0 335 239 162 94 chr6 153357553 153357904 -35921650 - MLT1H LTR MaLR -90 459 85 27 29 0 0 chr6 153358219 153358253 -35921301 + AT_rich Low_complexity Low_complexity 1 34 0 1551 95 40 5 chr6 153358728 153358950 -35920604 + MER30 DNA MER1_type 1 230 0 953 173 8 107 chr6 153359005 153359248 -35920306 + MER20 DNA MER1_type 1 219 0 1050 153 25 25 chr6 153359291 153359487 -35920067 - L1PB3 LINE L1 0 6154 5959 374 358 40 0 chr6 153360444 153360595 -35918959 + L2 LINE L2 3116 3272 0 192 77 0 0 chr6 153361310 153361336 -35918218 + (TG)n Simple_repeat Simple_repeat 2 27 0 291 285 204 18 chr6 153364291 153364512 -35915042 - L2 LINE L2 -101 3212 2951 2222 115 0 32 chr6 153364745 153365059 -35914495 - AluSx SINE Alu -8 304 1 473 299 169 0 chr6 153365841 153366018 -35913536 + MIR SINE MIR 22 228 -34 476 283 78 45 chr6 153367940 153368184 -35911370 + MIR SINE MIR 8 259 -3 1748 88 22 0 chr6 153368797 153369023 -35910531 + AluSp SINE Alu 1 231 -82 209 301 118 32 chr6 153369305 153369398 -35910156 - MIR SINE MIR 0 262 162 253 324 0 0 chr6 153369820 153369888 -35909666 - MER5B DNA MER1_type -35 143 76 2166 92 0 7 chr6 153369967 153370249 -35909305 - AluSg SINE Alu -30 280 1 257 0 30 0 chr6 153371048 153371081 -35908473 + (TG)n Simple_repeat Simple_repeat 2 35 0 1394 153 75 26 chr6 153373073 153373341 -35906213 - AluJb SINE Alu -31 281 1 2371 108 0 6 chr6 153375938 153376252 -35903302 + AluSx SINE Alu 1 312 0 21 0 0 0 chr6 153376279 153376300 -35903254 + AT_rich Low_complexity Low_complexity 1 21 0 444 293 22 66 chr6 153376362 153376543 -35903011 - MIR3 SINE MIR -14 194 22 3567 134 24 54 chr6 153377511 153378233 -35901321 + LTR34 LTR ERV1 1 699 0 209 281 18 0 chr6 153380264 153380321 -35899233 + GA-rich Low_complexity Low_complexity 2 59 0 228 266 230 9 chr6 153380970 153381083 -35898471 - MIR SINE MIR -50 212 75 2272 113 3 3 chr6 153381592 153381901 -35897653 + AluSx SINE Alu 1 309 -3 1024 213 17 75 chr6 153383230 153383578 -35895976 + L1MA9 LINE L1 5955 6282 -30 451 220 83 0 chr6 153383903 153384012 -35895542 - MER94 DNA DNA -16 118 1 267 299 11 0 chr6 153384199 153384286 -35895268 + MIR SINE MIR 42 129 -133 1280 263 83 35 chr6 153384413 153384953 -35894601 - MER90 LTR ERV1 -4 571 6 1697 75 5 5 chr6 153385181 153385394 -35894160 + AluSq SINE Alu 67 279 -34 194 0 0 37 chr6 153385394 153385421 -35894133 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1610 117 9 4 chr6 153385892 153386123 -35893431 - AluSg/x SINE Alu 0 312 81 530 160 32 0 chr6 153386125 153386219 -35893335 + AluSp SINE Alu 11 107 -206 231 296 220 5 chr6 153388048 153388234 -35891320 + L2 LINE L2 2658 2883 -431 436 189 194 26 chr6 153389666 153389893 -35889661 + L1MC3 LINE L1 7521 7785 0 1828 168 14 77 chr6 153389909 153390325 -35889229 - MLT1B LTR MaLR 0 390 1 1890 154 3 10 chr6 153390707 153391006 -35888548 + AluSx SINE Alu 1 297 -15 236 28 0 28 chr6 153391009 153391028 -35888526 + (TAA)n Simple_repeat Simple_repeat 2 21 -15 1986 87 75 0 chr6 153391028 153391293 -35888261 + AluSg SINE Alu 1 285 -25 236 28 0 28 chr6 153391293 153391309 -35888245 + (TAA)n Simple_repeat Simple_repeat 21 36 0 21 36 0 0 chr6 153393304 153393332 -35886222 + AT_rich Low_complexity Low_complexity 1 28 0 1837 143 40 0 chr6 153393351 153393646 -35885908 - AluJo SINE Alu 0 306 1 285 256 44 22 chr6 153394315 153394405 -35885149 + MIR SINE MIR 46 137 -125 327 293 0 2 chr6 153394939 153395056 -35884498 - MIR SINE MIR -63 145 40 1927 116 0 8 chr6 153396240 153396498 -35883056 + AluSx SINE Alu 39 294 -18 207 139 0 0 chr6 153396681 153396717 -35882837 + (GA)n Simple_repeat Simple_repeat 2 37 0 999 286 83 29 chr6 153397045 153397812 -35881742 + L1M4 LINE L1 2922 3730 -2416 2386 89 7 7 chr6 153398760 153399064 -35880490 - AluSx SINE Alu -8 304 1 2570 74 0 0 chr6 153401465 153401775 -35877779 - AluY SINE Alu -1 310 1 210 139 0 0 chr6 153402191 153402227 -35877327 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 306 207 0 0 chr6 153402365 153402423 -35877131 - AluJ SINE Alu -1 301 244 401 150 62 25 chr6 153402423 153402503 -35877051 - AluJ SINE Alu -123 189 107 1726 186 16 0 chr6 153402506 153402813 -35876741 + AluJo SINE Alu 1 312 0 357 132 54 39 chr6 153402833 153402962 -35876592 + GA-rich Low_complexity Low_complexity 3 133 0 754 170 0 0 chr6 153402994 153403106 -35876448 - AluJ SINE Alu -195 117 6 2529 74 0 0 chr6 153403140 153403438 -35876116 + AluY SINE Alu 1 298 -13 1829 106 8 4 chr6 153403762 153404008 -35875546 + AluSx SINE Alu 49 295 -17 336 259 65 102 chr6 153406052 153406100 -35873454 - MLT1J LTR MaLR -2 509 461 2216 97 10 0 chr6 153406100 153406400 -35873154 + AluSp SINE Alu 1 303 -10 336 259 65 102 chr6 153406400 153406644 -35872910 - MLT1J LTR MaLR -50 461 228 333 0 0 0 chr6 153407000 153407037 -35872517 + (CA)n Simple_repeat Simple_repeat 2 38 0 439 260 41 27 chr6 153407075 153407221 -35872333 + MIR SINE MIR 53 200 -62 419 178 248 0 chr6 153407798 153407899 -35871655 + FLAM_C SINE Alu 17 142 -1 823 224 69 30 chr6 153408010 153408242 -35871312 - MIR SINE MIR 0 262 22 247 319 60 24 chr6 153408284 153408450 -35871104 - L1ME LINE L1 -215 5906 5735 2226 88 0 7 chr6 153408715 153409029 -35870525 - AluSx SINE Alu 0 312 1 255 207 115 0 chr6 153409029 153409116 -35870438 + L1ME LINE L1 5803 5899 -222 270 301 44 9 chr6 153409315 153409454 -35870100 + L1MC4a LINE L1 5474 5602 -519 249 321 77 50 chr6 153409493 153409714 -35869840 + L1MC4a LINE L1 5697 5923 -1885 232 294 78 59 chr6 153410183 153410336 -35869218 + MIR3 SINE MIR 16 171 -37 2361 69 17 0 chr6 153411095 153411385 -35868169 + AluSp SINE Alu 6 300 -13 2374 104 3 0 chr6 153411399 153411708 -35867846 + AluSp SINE Alu 2 311 -2 22 0 0 0 chr6 153411708 153411730 -35867824 + AT_rich Low_complexity Low_complexity 1 22 0 2292 102 17 0 chr6 153412041 153412336 -35867218 + AluSg SINE Alu 1 300 -10 386 208 0 0 chr6 153413154 153413226 -35866328 - L1MB8 LINE L1 0 6178 6107 1970 162 0 0 chr6 153413229 153413538 -35866016 - AluSx SINE Alu -3 309 1 2542 181 108 6 chr6 153413570 153414136 -35865418 - L1MB4 LINE L1 -1 6179 5550 924 283 78 28 chr6 153414201 153414660 -35864894 - L2 LINE L2 -2 3311 2830 266 359 31 8 chr6 153414730 153414858 -35864696 - MIR SINE MIR -124 138 8 1940 142 3 26 chr6 153415587 153415890 -35863664 - AluJo SINE Alu -16 296 1 2286 116 0 0 chr6 153417141 153417434 -35862120 + AluSq SINE Alu 1 293 -20 1585 126 19 72 chr6 153417561 153417879 -35861675 - MER65A LTR ERV1 -35 410 110 2321 148 21 0 chr6 153417893 153418266 -35861288 - L1PA16 LINE L1 -9 6157 5777 2172 111 14 0 chr6 153418526 153418823 -35860731 - AluSx SINE Alu -7 305 5 2104 133 0 16 chr6 153419339 153419648 -35859906 + AluSx SINE Alu 1 304 -8 2123 141 0 0 chr6 153420603 153420907 -35858647 + AluSx SINE Alu 9 312 0 225 293 112 26 chr6 153421240 153421332 -35858222 + MIR SINE MIR 19 124 -84 1533 161 145 10 chr6 153421332 153421636 -35857918 - MER7A DNA MER2_type -2 344 2 225 293 112 26 chr6 153421636 153421659 -35857895 + MIR SINE MIR 124 144 -64 2329 41 45 17 chr6 153421754 153422045 -35857509 + AluY SINE Alu 1 299 -12 2665 55 0 0 chr6 153422741 153423051 -35856503 + AluY SINE Alu 1 310 -1 2081 144 0 3 chr6 153424674 153424973 -35854581 + AluJb SINE Alu 1 298 -14 2085 114 13 17 chr6 153424974 153425273 -35854281 + AluSx SINE Alu 1 298 -14 2226 108 3 0 chr6 153425528 153425823 -35853731 - AluSp SINE Alu -15 298 3 207 0 0 0 chr6 153427000 153427023 -35852531 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 299 280 88 47 chr6 153428823 153429016 -35850538 + MIR SINE MIR 36 236 -26 330 326 149 0 chr6 153431355 153431496 -35848058 + L3 LINE CR1 1414 1575 -2 237 350 53 63 chr6 153431789 153431910 -35847644 + MIR SINE MIR 57 177 -85 2279 101 6 32 chr6 153431910 153432226 -35847328 + AluSx SINE Alu 1 308 -4 237 350 53 63 chr6 153432226 153432310 -35847244 + MIR SINE MIR 177 260 -2 1206 131 131 38 chr6 153432310 153432547 -35847007 + MER46B DNA MER2_type 1 134 -102 653 285 77 8 chr6 153432881 153433116 -35846438 - MIR SINE MIR 0 262 12 866 231 82 106 chr6 153434259 153434738 -35844816 - MLT1H LTR MaLR -2 547 40 389 251 199 41 chr6 153435391 153435490 -35844064 - MIR SINE MIR -22 240 158 2383 78 10 13 chr6 153435490 153435797 -35843757 + AluSg SINE Alu 1 306 -4 389 251 199 41 chr6 153435797 153435868 -35843686 - MIR SINE MIR -104 158 43 361 286 0 0 chr6 153435878 153435955 -35843599 - MIR SINE MIR -146 116 40 273 291 105 24 chr6 153436038 153436248 -35843306 + L1MEd LINE L1 3 229 -5890 333 281 51 55 chr6 153436516 153436790 -35842764 + L1MEd LINE L1 592 864 -5255 306 336 77 43 chr6 153436951 153437159 -35842395 + L1ME LINE L1 863 1077 -5854 526 96 96 0 chr6 153437187 153437260 -35842294 + MADE1 DNA Mariner 1 80 0 262 270 81 40 chr6 153437534 153437708 -35841846 + L1ME LINE L1 1303 1483 -4940 386 229 48 90 chr6 153437719 153437907 -35841647 + L1ME4a LINE L1 20 199 -6660 266 286 24 48 chr6 153438298 153438424 -35841130 + L1ME4a LINE L1 1066 1188 -5667 1431 249 107 15 chr6 153438594 153439120 -35840434 + L1ME4a LINE L1 1327 1900 -4955 * 1647 241 85 52 chr6 153439119 153439988 -35839566 + L1ME4a LINE L1 2107 3004 -4134 590 143 89 18 chr6 153439983 153440095 -35839459 + L1MB8 LINE L1 5374 5493 -685 * 1641 91 5 0 chr6 153440095 153440303 -35839251 + AluSc SINE Alu 1 209 -100 1223 85 0 0 chr6 153440308 153440461 -35839093 + AluSc SINE Alu 155 307 -2 2236 172 46 21 chr6 153440461 153441011 -35838543 + L1MB8 LINE L1 5482 6084 -88 4660 247 81 6 chr6 153441654 153441891 -35837663 + L1ME4a LINE L1 4306 4524 -2433 1740 173 0 39 chr6 153441891 153442203 -35837351 + AluJb SINE Alu 1 300 -12 4660 247 81 6 chr6 153442203 153443368 -35836186 + L1ME4a LINE L1 4524 5814 -1143 385 207 162 31 chr6 153443381 153443656 -35835898 + L1ME4a LINE L1 5933 6243 -743 1872 221 72 54 chr6 153444386 153444938 -35834616 - MER68 LTR ERV1 0 562 1 25 31 0 0 chr6 153445657 153445689 -35833865 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr6 153446001 153446025 -35833529 + AT_rich Low_complexity Low_complexity 1 24 0 2024 196 43 26 chr6 153446182 153446600 -35832954 - MLT2B2 LTR ERVL -90 425 1 211 302 16 0 chr6 153446686 153446749 -35832805 - MER91 DNA MER1_type 0 140 77 886 201 73 0 chr6 153446938 153447102 -35832452 + MER58A DNA MER1_type 49 224 0 1795 130 0 0 chr6 153448491 153448737 -35830817 + AluSx SINE Alu 46 291 -21 237 268 14 0 chr6 153448905 153448976 -35830578 + L2 LINE L2 2139 2210 -1104 403 298 163 32 chr6 153449042 153449286 -35830268 + L2 LINE L2 2819 3029 -284 180 0 0 0 chr6 153449286 153449306 -35830248 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2076 107 0 0 chr6 153449311 153449582 -35829972 - AluSx SINE Alu -41 271 1 403 298 163 32 chr6 153449582 153449741 -35829813 + L2 LINE L2 3032 3282 -31 1978 184 43 31 chr6 153450606 153450997 -35828557 - MSTD LTR MaLR 0 396 1 1626 189 105 6 chr6 153451002 153451346 -35828208 - MSTD-int LTR MaLR -6 1729 1352 247 158 0 0 chr6 153451361 153451399 -35828155 - MSTD LTR MaLR -358 38 1 2282 85 0 3 chr6 153452142 153452435 -35827119 + AluSg1 SINE Alu 1 292 -17 696 225 126 26 chr6 153453030 153453261 -35826293 - L1MC5 LINE L1 -59 7902 7649 878 193 74 0 chr6 153453264 153453466 -35826088 + L1MB4 LINE L1 5962 6178 -2 342 213 62 0 chr6 153454025 153454105 -35825449 + L2 LINE L2 3181 3265 -7 21 0 0 0 chr6 153454715 153454736 -35824818 + AT_rich Low_complexity Low_complexity 1 21 0 610 261 145 40 chr6 153454898 153455250 -35824304 + L1ME4a LINE L1 6442 6830 -102 428 306 24 6 chr6 153455363 153455533 -35824021 + L1MC4a LINE L1 5685 5857 -1951 1208 208 15 19 chr6 153455568 153455828 -35823726 - AluJo SINE Alu -53 259 1 2545 94 67 0 chr6 153458014 153458388 -35821166 + L1M1 LINE L1 5346 5744 -560 1045 113 57 34 chr6 153458397 153458574 -35820980 - THE1B LTR MaLR -1 363 183 * 1245 224 7 27 chr6 153458571 153458870 -35820684 + MLT2B1 LTR ERVL 33 325 -195 1000 94 163 0 chr6 153458871 153459031 -35820523 - THE1B LTR MaLR -178 186 1 1086 77 0 39 chr6 153459031 153459115 -35820439 + L1MA3 LINE L1 5745 5822 -483 2221 84 0 0 chr6 153459115 153459390 -35820164 + AluSg SINE Alu 29 303 -7 1086 77 0 39 chr6 153459390 153459461 -35820093 + L1MA3 LINE L1 5822 5894 -411 2177 111 3 13 chr6 153459902 153460218 -35819336 + AluSp SINE Alu 1 313 0 205 296 130 19 chr6 153461253 153461361 -35818193 + L2 LINE L2 3149 3268 -4 2067 112 26 26 chr6 153462393 153462729 -35816825 - AluSx SINE Alu 0 312 1 829 167 0 0 chr6 153462874 153462994 -35816560 + AluJ SINE Alu 2 121 -181 6058 90 39 2 chr6 153462994 153463847 -35815707 + L1PA11 LINE L1 5288 6171 -3 985 156 0 48 chr6 153463860 153464027 -35815527 + AluJ SINE Alu 130 288 -24 332 199 184 59 chr6 153464405 153464541 -35815013 - MIR SINE MIR -43 219 67 2032 178 58 6 chr6 153464895 153465260 -35814294 - MLT1B LTR MaLR -2 388 5 1451 184 48 38 chr6 153465293 153465586 -35813968 + AluJb SINE Alu 1 296 -16 288 302 66 9 chr6 153465841 153465947 -35813607 - MIR SINE MIR -99 163 52 2191 127 3 0 chr6 153465955 153466262 -35813292 + AluSx SINE Alu 1 308 -4 1178 189 115 29 chr6 153466332 153466390 -35813164 + MLT1A1 LTR MaLR 19 71 -294 2851 65 122 5 chr6 153466390 153466791 -35812763 - LTR7 LTR ERV1 -2 448 1 1178 189 115 29 chr6 153466791 153467044 -35812510 + MLT1A1 LTR MaLR 71 357 -8 1196 121 0 0 chr6 153467096 153467262 -35812292 + AluSg/x SINE Alu 137 302 -10 200 358 110 0 chr6 153468929 153469038 -35810516 - L2 LINE L2 -19 3253 3133 967 159 46 26 chr6 153469164 153469359 -35810195 + L1MB4 LINE L1 5980 6178 -2 820 151 96 0 chr6 153469787 153469933 -35809621 + Tigger4(Zombi) DNA MER2_type 56 215 -2516 2498 57 0 3 chr6 153470018 153470314 -35809240 - AluY SINE Alu -16 295 1 1113 179 0 19 chr6 153472081 153472288 -35807266 + AluJb SINE Alu 86 288 -24 2181 114 0 13 chr6 153475086 153475392 -35804162 + AluSq SINE Alu 1 302 -11 1869 134 32 3 chr6 153476523 153476806 -35802748 + AluSx SINE Alu 4 294 -18 528 269 67 26 chr6 153477155 153477348 -35802206 - MIR SINE MIR -41 221 21 862 201 71 43 chr6 153478703 153478887 -35800667 - MER5A DNA MER1_type 0 189 1 22 70 0 0 chr6 153481546 153481589 -35797965 + AT_rich Low_complexity Low_complexity 1 43 0 388 62 0 100 chr6 153481633 153481713 -35797841 + L1MA5 LINE L1 6229 6300 0 2402 72 7 13 chr6 153481719 153482023 -35797531 + AluY SINE Alu 7 308 -3 423 0 0 0 chr6 153482024 153482071 -35797483 + (TA)n Simple_repeat Simple_repeat 2 48 0 314 312 68 50 chr6 153482387 153482608 -35796946 + MIR SINE MIR 17 241 -21 21 0 0 0 chr6 153483331 153483352 -35796202 + AT_rich Low_complexity Low_complexity 1 21 0 436 64 11 160 chr6 153484065 153484103 -35795451 + MADE1 DNA Mariner 1 18 -62 2186 120 7 0 chr6 153484103 153484404 -35795150 - AluSx SINE Alu -9 303 1 436 64 11 160 chr6 153484404 153484459 -35795095 + MADE1 DNA Mariner 18 80 0 2040 110 21 0 chr6 153486248 153486530 -35793024 + AluSx SINE Alu 23 310 -2 942 241 152 18 chr6 153486536 153486930 -35792624 + Charlie4a DNA MER1_type 35 481 -27 290 323 134 0 chr6 153487088 153487215 -35792339 + MIR3 SINE MIR 34 177 -31 2149 103 41 0 chr6 153488210 153488502 -35791052 + AluSx SINE Alu 1 304 -8 531 253 39 50 chr6 153488629 153488811 -35790743 - MIR SINE MIR -71 191 12 559 310 49 25 chr6 153490321 153490524 -35789030 - MIR SINE MIR -50 212 5 24 0 0 0 chr6 153490607 153490631 -35788923 + AT_rich Low_complexity Low_complexity 1 24 0 2229 98 0 30 chr6 153490715 153491020 -35788534 + AluSg SINE Alu 1 296 -14 1710 184 29 0 chr6 153491662 153491940 -35787614 + AluJb SINE Alu 1 286 -26 7372 28 7 0 chr6 153492187 153493679 -35785875 - L1PA4 LINE L1 0 6155 4657 7218 29 0 1 chr6 153493679 153494569 -35784985 + L1PA4 LINE L1 3783 4673 -1473 461 139 216 14 chr6 153494599 153494741 -35784813 - L1M1 LINE L1 -449 5721 5585 371 230 105 46 chr6 153494709 153495535 -35784019 - L1M4 LINE L1 -2699 3447 2340 * 2255 106 0 0 chr6 153495535 153495827 -35783727 - AluSc SINE Alu -17 292 1 371 230 105 46 chr6 153495827 153495925 -35783629 - L1M4 LINE L1 -3806 2340 2249 422 270 134 70 chr6 153495987 153496546 -35783008 - L2 LINE L2 -1201 2113 1519 2891 116 0 36 chr6 153496944 153497417 -35782137 - L1PA15 LINE L1 0 6165 5710 2095 133 3 3 chr6 153498134 153498479 -35781075 - AluSx SINE Alu 0 345 1 297 159 0 0 chr6 153498834 153498878 -35780676 + MIR3 SINE MIR 116 159 -49 1494 169 124 27 chr6 153499008 153499101 -35780453 - MER47A DNA MER2_type -1957 366 283 1593 207 0 30 chr6 153499101 153499400 -35780154 - AluJo SINE Alu -22 290 1 1494 169 124 27 chr6 153499400 153499637 -35779917 - MER47A DNA MER2_type -2040 283 4 234 281 74 8 chr6 153499911 153500032 -35779522 + L1MEd LINE L1 16 144 -5975 7165 50 16 0 chr6 153500149 153501213 -35778341 - L1PA5 LINE L1 -4 6150 5080 24533 57 6 4 chr6 153501214 153503343 -35776211 + L1PA6 LINE L1 1967 4105 -2049 2419 84 151 8 chr6 153503343 153503735 -35775819 - LTR7 LTR ERV1 -2 448 1 24533 57 6 4 chr6 153503735 153505783 -35773771 + L1PA6 LINE L1 4105 6148 -6 476 282 208 12 chr6 153505784 153506153 -35773401 + L1M4 LINE L1 2757 3209 -2937 237 208 0 0 chr6 153506155 153506208 -35773346 - L1MC4 LINE L1 -1338 6704 6652 307 244 52 43 chr6 153506242 153506357 -35773197 + L1M4 LINE L1 3221 3336 -2810 543 182 70 53 chr6 153506420 153506607 -35772947 - L1MC4a LINE L1 -1643 6165 5976 657 279 18 18 chr6 153506637 153506856 -35772698 + MER58A DNA MER1_type 2 220 -4 584 297 14 9 chr6 153506869 153507081 -35772473 - L1MC4a LINE L1 -1910 5898 5686 1834 175 3 10 chr6 153507847 153508150 -35771404 + AluJb SINE Alu 1 301 -11 2168 90 35 7 chr6 153510096 153510385 -35769169 - AluSg SINE Alu -13 297 1 1532 226 176 62 chr6 153510510 153511266 -35768288 + L2 LINE L2 1724 2565 -749 1820 190 121 62 chr6 153511267 153511908 -35767646 - LTR28 LTR ERV1 0 1020 109 457 197 241 6 chr6 153511909 153512065 -35767489 - LTR28 LTR ERV1 -286 178 1 1303 268 49 38 chr6 153512065 153512205 -35767349 + L2 LINE L2 2563 2700 -613 2476 90 0 3 chr6 153512205 153512515 -35767039 + AluY SINE Alu 1 309 -2 1303 268 49 38 chr6 153512515 153513042 -35766512 + L2 LINE L2 2700 3243 -70 293 119 0 0 chr6 153513488 153513530 -35766024 + 5S rRNA rRNA 1 42 -79 23 33 0 0 chr6 153516516 153516546 -35763008 + AT_rich Low_complexity Low_complexity 1 30 0 538 325 30 10 chr6 153516662 153516862 -35762692 - MIR SINE MIR -38 224 21 2368 60 0 0 chr6 153517058 153517364 -35762190 + AluY SINE Alu 1 306 0 2104 125 3 10 chr6 153517467 153517778 -35761776 - AluSq SINE Alu -4 309 1 2431 100 0 0 chr6 153518687 153518998 -35760556 + AluSx SINE Alu 1 311 -1 457 307 66 6 chr6 153520397 153520563 -35758991 - MIR3 SINE MIR -32 176 1 1807 180 0 20 chr6 153520686 153520992 -35758562 - AluJb SINE Alu -12 300 1 1382 193 78 11 chr6 153521234 153521504 -35758050 + AluJo SINE Alu 1 288 -24 2266 106 13 0 chr6 153521771 153522073 -35757481 - AluSg SINE Alu -4 306 1 484 243 21 0 chr6 153522107 153522247 -35757307 + MLT1L LTR MaLR 2 144 -471 1851 167 0 10 chr6 153522492 153522797 -35756757 - AluJo SINE Alu -10 302 1 230 221 59 0 chr6 153522798 153522866 -35756688 + MLT1L LTR MaLR 544 615 0 2341 110 0 0 chr6 153522873 153523182 -35756372 - AluSx SINE Alu -3 309 1 1387 195 91 7 chr6 153523356 153523663 -35755891 + MER58B DNA MER1_type 2 334 -7 753 129 36 57 chr6 153523667 153523807 -35755747 + FLAM_C SINE Alu 3 139 -4 301 247 45 11 chr6 153523820 153523909 -35755645 + MER5B DNA MER1_type 4 95 -83 974 86 0 66 chr6 153523923 153524075 -35755479 + FLAM_C SINE Alu 1 142 -1 202 184 26 0 chr6 153524087 153524125 -35755429 - MER5B DNA MER1_type -138 40 2 7064 149 79 30 chr6 153524600 153526315 -35753239 + L1MCa LINE L1 1 1893 -4533 871 131 0 0 chr6 153526315 153526437 -35753117 + FLAM_C SINE Alu 1 122 -21 2135 118 10 29 chr6 153526457 153526771 -35752783 + AluSq SINE Alu 1 308 -5 1829 159 7 20 chr6 153526942 153527243 -35752311 + AluSq SINE Alu 1 297 -16 1119 160 0 0 chr6 153527244 153527413 -35752141 + AluJo/FRAM SINE Alu 136 304 -8 1382 147 194 8 chr6 153527413 153527780 -35751774 + L1MCa LINE L1 1887 2321 -4105 1533 161 19 30 chr6 153527785 153528052 -35751502 + AluJb SINE Alu 7 270 -42 2010 114 0 35 chr6 153528152 153528483 -35751071 - AluSc SINE Alu 0 321 1 1014 152 164 37 chr6 153528820 153529064 -35750490 - ORSL DNA AcHobo 0 275 1 245 346 128 5 chr6 153529644 153529832 -35749722 - MIR SINE MIR -4 258 48 26 0 0 0 chr6 153530256 153530282 -35749272 + AT_rich Low_complexity Low_complexity 1 26 0 490 258 0 40 chr6 153530471 153530569 -35748985 + MER5C DNA MER1_type 2 96 -228 3054 122 30 18 chr6 153530569 153531060 -35748494 - LOR1a LTR ERV1 0 497 1 490 258 0 40 chr6 153531060 153531085 -35748469 + MER5C DNA MER1_type 96 120 -204 249 280 13 0 chr6 153531223 153531298 -35748256 + MER5C DNA MER1_type 249 324 0 1726 154 27 24 chr6 153531370 153531668 -35747886 - AluJb SINE Alu -7 305 7 1352 157 180 15 chr6 153531951 153532218 -35747336 + AluJo SINE Alu 1 311 -1 782 166 5 114 chr6 153532957 153533150 -35746404 + FAM SINE Alu 1 172 -3 2169 130 125 10 chr6 153533232 153533616 -35745938 - MSTA LTR MaLR 0 428 1 1248 255 173 35 chr6 153533657 153534178 -35745376 - MLT1G1 LTR MaLR -2 593 1 487 289 83 43 chr6 153534223 153534375 -35745179 + MLT1I LTR MaLR 14 158 -251 3199 208 41 11 chr6 153534375 153535009 -35744545 - MER82 DNA MER2_type 0 653 1 487 289 83 43 chr6 153535009 153535230 -35744324 + MLT1I LTR MaLR 158 402 -7 1842 155 3 11 chr6 153535273 153535593 -35743961 + AluJb SINE Alu 1 318 0 29 47 0 0 chr6 153535869 153535912 -35743642 + AT_rich Low_complexity Low_complexity 1 43 0 1756 124 48 105 chr6 153536510 153536636 -35742918 + L1MB7 LINE L1 5787 5919 -265 2284 101 3 0 chr6 153536636 153536934 -35742620 - AluSp SINE Alu -14 299 1 1756 124 48 105 chr6 153536934 153537227 -35742327 + L1MB7 LINE L1 5919 6182 -2 2688 144 29 0 chr6 153537240 153537656 -35741898 - MSTC LTR MaLR 0 428 1 3323 184 44 39 chr6 153537657 153538380 -35741174 + L1MB8 LINE L1 5452 6178 0 888 147 45 13 chr6 153539466 153539674 -35739880 - AluJ SINE Alu 0 332 120 232 139 0 0 chr6 153539681 153539717 -35739837 - tRNA-Gly-GGA tRNA tRNA -37 38 3 934 101 7 14 chr6 153539717 153539856 -35739698 - AluJ SINE Alu -174 138 1 1783 153 66 68 chr6 153543027 153543346 -35736208 - MLT1A1 LTR MaLR -1 364 45 1760 127 15 15 chr6 153543346 153543613 -35735941 + AluJb SINE Alu 30 296 -16 1783 153 66 68 chr6 153543613 153543658 -35735896 - MLT1A1 LTR MaLR -320 45 1 5095 196 110 71 chr6 153543663 153545084 -35734470 - MLT1A1-int LTR MaLR -6 1729 254 1819 161 38 0 chr6 153545596 153545888 -35733666 - AluJo SINE Alu -9 303 1 479 274 7 22 chr6 153546422 153546557 -35732997 + MIR SINE MIR 86 218 -44 2206 124 0 13 chr6 153547044 153547358 -35732196 - AluSq SINE Alu -3 310 1 204 348 0 0 chr6 153547506 153547575 -35731979 - L2 LINE L2 -35 3237 3169 1455 159 97 42 chr6 153548248 153548537 -35731017 + AluJb SINE Alu 1 305 -7 356 227 248 21 chr6 153548723 153548864 -35730690 + MER5A DNA MER1_type 15 187 -2 2315 102 0 7 chr6 153549022 153549326 -35730228 - AluSx SINE Alu -10 302 1 248 235 24 24 chr6 153550292 153550377 -35729177 - L2 LINE L2 -1 3271 3187 391 257 125 59 chr6 153550468 153550756 -35728798 - L2 LINE L2 -75 3238 2932 333 260 92 82 chr6 153551295 153551349 -35728205 + LTR16A LTR ERVL 168 220 -230 1717 168 42 0 chr6 153551349 153551635 -35727919 + AluJb SINE Alu 1 298 -14 333 260 92 82 chr6 153551635 153551776 -35727778 + LTR16A LTR ERVL 220 365 -85 3310 286 73 33 chr6 153551828 153553866 -35725688 + ERVL LTR ERVL 2 2190 -2806 2589 264 47 14 chr6 153553956 153554808 -35724746 + L1MEc LINE L1 37 916 -5480 1051 331 83 32 chr6 153554808 153556880 -35722674 + ERVL LTR ERVL 3129 5384 -380 254 332 18 17 chr6 153557000 153557148 -35722406 + LTR16A LTR ERVL 3 127 -323 265 277 193 8 chr6 153557321 153557440 -35722114 + LTR16A LTR ERVL 305 445 -5 189 0 0 0 chr6 153559667 153559688 -35719866 + (A)n Simple_repeat Simple_repeat 1 21 0 216 0 0 0 chr6 153560388 153560412 -35719142 + (A)n Simple_repeat Simple_repeat 1 24 0 907 140 0 22 chr6 153561520 153561656 -35717898 + FLAM_C SINE Alu 1 133 0 2204 91 20 20 chr6 153561671 153561968 -35717586 - AluSx SINE Alu -14 298 2 287 276 179 19 chr6 153562805 153562961 -35716593 + MIR SINE MIR 16 196 -66 183 239 57 57 chr6 153562984 153563072 -35716482 + MIR SINE MIR 67 154 -108 262 258 0 0 chr6 153563499 153563565 -35715989 - MIR3 SINE MIR -23 185 120 1563 126 0 17 chr6 153563812 153564043 -35715511 + AluSg/x SINE Alu 81 307 -3 195 294 29 15 chr6 153564884 153564952 -35714602 - L2 LINE L2 -1 3312 3244 183 129 0 0 chr6 153568101 153568132 -35711422 + (GGA)n Simple_repeat Simple_repeat 1 31 0 14226 111 26 85 chr6 153572232 153573561 -35705993 + Tigger1 DNA MER2_type 4 1114 -1304 2360 84 0 10 chr6 153573561 153573859 -35705695 + AluSp SINE Alu 1 295 -18 14226 111 26 85 chr6 153573859 153575092 -35704462 + Tigger1 DNA MER2_type 1114 2417 -1 32 75 0 0 chr6 153575206 153575273 -35704281 + AT_rich Low_complexity Low_complexity 1 67 0 608 227 69 81 chr6 153577567 153577827 -35701727 - MIR SINE MIR 0 262 6 318 137 0 0 chr6 153579597 153579648 -35699906 - L1MC4 LINE L1 -1339 6703 6653 1723 171 3 14 chr6 153580118 153580428 -35699126 + AluSx SINE Alu 1 307 0 352 301 41 24 chr6 153580578 153580701 -35698853 + L2 LINE L2 3140 3264 -8 469 167 0 0 chr6 153580770 153580848 -35698706 + MER57A LTR ERV1 301 378 -25 2298 86 3 10 chr6 153582606 153582909 -35696645 - AluSq SINE Alu -12 301 1 27 29 0 0 chr6 153583818 153583852 -35695702 + AT_rich Low_complexity Low_complexity 1 34 0 2194 93 17 13 chr6 153584065 153584365 -35695189 + AluSq SINE Alu 1 301 -12 618 242 45 32 chr6 153585055 153585262 -35694292 - L1ME3A LINE L1 -129 6041 5835 2296 98 3 0 chr6 153585343 153585648 -35693906 + AluSp SINE Alu 1 306 -7 229 221 39 96 chr6 153585846 153585950 -35693604 + MIR SINE MIR 123 220 -42 2176 108 3 10 chr6 153585967 153586263 -35693291 + AluSc SINE Alu 1 294 -15 1214 232 77 58 chr6 153587501 153588084 -35691470 + L2 LINE L2 2607 3212 -101 256 356 165 0 chr6 153588137 153588331 -35691223 - MIR SINE MIR -8 254 29 207 268 89 0 chr6 153588483 153588539 -35691015 + MIR SINE MIR 58 118 -144 2307 87 7 17 chr6 153589546 153589846 -35689708 - AluSx SINE Alu -15 297 1 873 238 0 0 chr6 153589922 153590107 -35689447 - AluJo SINE Alu -7 305 121 1887 158 7 7 chr6 153590109 153590419 -35689135 - AluJo SINE Alu -2 310 1 407 228 133 23 chr6 153590671 153590756 -35688798 - L1ME3A LINE L1 -142 6022 5948 189 107 0 0 chr6 153590756 153590784 -35688770 + (TG)n Simple_repeat Simple_repeat 1 28 0 407 228 133 23 chr6 153590784 153590965 -35688589 - L1ME3A LINE L1 -216 5948 5736 627 227 0 13 chr6 153591130 153591280 -35688274 + L1MA10 LINE L1 6186 6333 -1 455 335 49 0 chr6 153591285 153591449 -35688105 + MIR SINE MIR 58 229 -33 219 384 138 0 chr6 153591449 153591587 -35687967 - L2 LINE L2 -24 3248 3092 289 260 120 67 chr6 153592123 153592273 -35687281 + MIR SINE MIR 35 192 -70 399 283 0 0 chr6 153592561 153592667 -35686887 - MIR SINE MIR 0 262 157 715 161 32 8 chr6 153592667 153592791 -35686763 + MER94 DNA DNA 1 127 -7 248 280 60 20 chr6 153592793 153592893 -35686661 - MIR SINE MIR -113 149 46 2156 123 10 13 chr6 153593444 153593753 -35685801 - AluSx SINE Alu -4 308 1 1975 116 15 0 chr6 153594331 153594599 -35684955 + AluSg SINE Alu 28 299 -11 897 94 0 8 chr6 153595002 153595119 -35684435 + AluSq/x SINE Alu 21 136 -176 2296 94 3 13 chr6 153595119 153595426 -35684128 + AluSc SINE Alu 1 304 -5 1972 118 35 3 chr6 153595571 153595859 -35683695 - AluSx SINE Alu -15 297 1 509 304 111 36 chr6 153595866 153596773 -35682781 - L1 LINE L1 -1675 4471 3511 2009 166 12 18 chr6 153596934 153597277 -35682277 - MER2 DNA MER2_type -3 341 1 240 273 160 13 chr6 153597400 153597550 -35682004 + L2 LINE L2 649 820 -2494 3423 290 82 38 chr6 153597614 153598700 -35680854 - L2 LINE L2 -826 2488 1312 2673 171 13 15 chr6 153598700 153599157 -35680397 - MSTB2 LTR MaLR -1 456 1 3423 290 82 38 chr6 153599157 153599616 -35679938 - L2 LINE L2 -2002 1312 875 1151 308 114 20 chr6 153599613 153600099 -35679455 + L2 LINE L2 2453 3055 -258 * 2072 52 0 4 chr6 153600099 153600349 -35679205 - L1PA8 LINE L1 -2 6170 5922 1151 308 114 20 chr6 153600349 153600635 -35678919 + L2 LINE L2 3055 3313 0 2440 96 0 0 chr6 153601273 153601585 -35677969 - AluSx SINE Alu 0 312 1 465 119 60 0 chr6 153601660 153601744 -35677810 + Tigger3(Golem) DNA MER2_type 2605 2693 -336 522 56 28 0 chr6 153601744 153601816 -35677738 + Tigger3(Golem) DNA MER2_type 2634 2707 -322 302 279 99 9 chr6 153601830 153601941 -35677613 - MIR3 SINE MIR -51 157 37 2455 93 0 0 chr6 153602284 153602596 -35676958 - AluSx SINE Alu 0 312 1 2194 89 0 7 chr6 153602633 153602913 -35676641 - AluY SINE Alu -33 278 1 1357 161 24 0 chr6 153603155 153603366 -35676188 + Tigger3(Golem) DNA MER2_type 1 216 -2813 456 101 0 3 chr6 153603374 153603569 -35675985 + AluSx SINE Alu 1 251 -58 491 190 8 16 chr6 153603669 153603790 -35675764 + AluY SINE Alu 183 302 -9 4653 96 41 142 chr6 153603794 153603872 -35675682 + Tigger3(Golem) DNA MER2_type 211 295 -2734 186 71 0 0 chr6 153603872 153603900 -35675654 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 2375 49 7 0 chr6 153603909 153604195 -35675359 - AluY SINE Alu -23 288 1 4653 96 41 142 chr6 153604195 153604666 -35674888 + Tigger3(Golem) DNA MER2_type 303 820 -2209 838 168 0 0 chr6 153604666 153604791 -35674763 - FLAM_C SINE Alu -18 125 1 4653 96 41 142 chr6 153604791 153605105 -35674449 + Tigger3(Golem) DNA MER2_type 820 1164 -1865 2388 127 0 29 chr6 153605105 153605452 -35674102 + MER1B DNA MER1_type 1 337 0 4653 96 41 142 chr6 153605452 153605594 -35673960 + Tigger3(Golem) DNA MER2_type 1164 3029 0 447 299 30 8 chr6 153605594 153605728 -35673826 + L2 LINE L2 3165 3301 -12 1966 139 0 32 chr6 153606185 153606494 -35673060 + AluJb SINE Alu 1 299 -13 35 71 0 0 chr6 153606771 153606841 -35672713 + AT_rich Low_complexity Low_complexity 1 70 0 1856 158 7 10 chr6 153607033 153607330 -35672224 - AluJb SINE Alu -12 300 5 1277 186 77 14 chr6 153608339 153608624 -35670930 + L1MA7 LINE L1 5986 6288 -3 2076 133 3 19 chr6 153608640 153608956 -35670598 + AluSx SINE Alu 1 311 -1 838 232 67 0 chr6 153609008 153609172 -35670382 - AluJo SINE Alu -19 293 119 1068 209 21 4 chr6 153609805 153610039 -35669515 - L1MD3 LINE L1 -26 7969 7732 25 0 0 0 chr6 153610367 153610392 -35669162 + AT_rich Low_complexity Low_complexity 1 25 0 346 335 39 32 chr6 153610415 153610570 -35668984 - MIR SINE MIR -82 180 25 2401 83 3 3 chr6 153611610 153611912 -35667642 + AluSp SINE Alu 1 302 -11 1793 165 7 32 chr6 153611962 153612271 -35667283 - AluJo SINE Alu -11 301 1 4460 132 1 32 chr6 153612383 153612407 -35667147 + L1PB4 LINE L1 5461 5484 -672 2038 122 0 53 chr6 153612407 153612727 -35666827 + AluSx SINE Alu 1 303 -9 4460 132 1 32 chr6 153612727 153613291 -35666263 + L1PB4 LINE L1 5484 6026 -130 2037 121 10 7 chr6 153613291 153613588 -35665966 + AluSq SINE Alu 3 300 -13 4460 132 1 32 chr6 153613588 153613716 -35665838 + L1PB4 LINE L1 6026 6156 0 1788 143 18 28 chr6 153614065 153614351 -35665203 + AluJo SINE Alu 5 287 -25 34 24 0 0 chr6 153614373 153614414 -35665140 + AT_rich Low_complexity Low_complexity 1 41 0 1441 109 187 34 chr6 153614756 153615023 -35664531 - AluSg1 SINE Alu -1 308 1 3330 186 28 13 chr6 153615785 153616452 -35663102 - Tigger7 DNA MER2_type -1 2586 2 662 224 106 12 chr6 153616877 153617038 -35662516 + MER8 DNA MER2_type 1 176 -63 349 141 47 0 chr6 153617124 153617188 -35662366 - Tigger2 DNA MER2_type -2651 67 1 2472 70 3 0 chr6 153618910 153619210 -35660344 + AluSg SINE Alu 1 301 -9 811 209 40 6 chr6 153619637 153619814 -35659740 - MER5A DNA MER1_type 0 189 7 634 242 108 22 chr6 153620317 153620540 -35659014 + L2 LINE L2 2579 2820 -494 189 0 0 0 chr6 153622190 153622211 -35657343 + (A)n Simple_repeat Simple_repeat 1 21 0 833 107 8 0 chr6 153622540 153622671 -35656883 + (TC)n Simple_repeat Simple_repeat 2 133 0 1826 154 17 0 chr6 153622671 153622964 -35656590 - AluJb SINE Alu -14 298 1 302 260 30 50 chr6 153623472 153623572 -35655982 - MIR3 SINE MIR -7 201 104 2226 115 0 0 chr6 153624158 153624453 -35655101 - AluSx SINE Alu -17 295 1 302 318 108 7 chr6 153624679 153624827 -35654727 + MIR3 SINE MIR 37 199 -9 391 220 110 0 chr6 153625591 153625709 -35653845 + L2 LINE L2 3144 3274 -39 2416 71 3 0 chr6 153627679 153627973 -35651581 - AluSg SINE Alu -15 295 1 359 358 40 0 chr6 153629293 153629469 -35650085 + MIR SINE MIR 12 194 -68 2358 59 3 3 chr6 153629628 153629972 -35649582 + AluY SINE Alu 1 344 0 1820 127 12 49 chr6 153630689 153631013 -35648541 + L1PA15 LINE L1 5710 6021 -144 1555 126 0 17 chr6 153631256 153631487 -35648067 - AluSg/x SINE Alu -3 307 81 283 258 0 0 chr6 153631734 153631800 -35647754 + MIR3 SINE MIR 120 185 -23 226 259 133 36 chr6 153632149 153632315 -35647239 - MIR SINE MIR -14 248 67 338 263 179 19 chr6 153632338 153632494 -35647060 - MIR SINE MIR -66 196 16 239 280 153 13 chr6 153633168 153633325 -35646229 + L1MC5 LINE L1 7751 7929 -32 2365 107 0 0 chr6 153633331 153633639 -35645915 + AluSx SINE Alu 2 309 -3 287 223 142 74 chr6 153633646 153633715 -35645839 - MLT1L LTR MaLR 0 615 552 1838 167 0 10 chr6 153633715 153634020 -35645534 + AluJo SINE Alu 1 302 -10 287 223 142 74 chr6 153634020 153634098 -35645456 - MLT1L LTR MaLR -63 552 458 535 243 21 0 chr6 153634265 153634405 -35645149 - MLT1L LTR MaLR -471 144 2 2030 110 15 0 chr6 153634439 153634711 -35644843 + AluSg SINE Alu 1 276 -34 325 314 77 0 chr6 153834873 153835093 -35444461 + L1MC4a LINE L1 5678 5790 -331 342 294 64 0 chr6 153835720 153835829 -35443725 + MIR SINE MIR 104 219 -43 2115 39 55 0 chr6 153837506 153837795 -35441759 - AluY SINE Alu 0 316 14 458 289 63 19 chr6 153838260 153838419 -35441135 + L2 LINE L2 3148 3313 0 207 176 0 0 chr6 153839158 153839192 -35440362 + CT-rich Low_complexity Low_complexity 3 36 0 621 233 8 0 chr6 153839266 153839386 -35440168 - FLAM_A SINE Alu -12 121 1 21 0 0 0 chr6 153839392 153839413 -35440141 + AT_rich Low_complexity Low_complexity 1 21 0 351 226 61 9 chr6 153839430 153839545 -35440009 - HAL1b LINE L1 -10 1338 1218 198 310 78 26 chr6 153840096 153840212 -35439342 + L2 LINE L2 3159 3280 -33 256 291 196 20 chr6 153840442 153840590 -35438964 - MER5A DNA MER1_type -7 182 9 261 362 60 17 chr6 153840884 153841000 -35438554 + L2 LINE L2 2963 3083 -189 181 241 111 19 chr6 153841029 153841083 -35438471 - L2 LINE L2 -6 3266 3208 * 242 332 91 48 chr6 153841079 153841287 -35438267 - L2 LINE L2 -201 3071 2855 2254 121 0 0 chr6 153841339 153841637 -35437917 - AluSx SINE Alu -14 298 1 317 275 163 36 chr6 153841637 153841908 -35437646 - L2 LINE L2 -566 2748 2443 2114 107 10 3 chr6 153843143 153843442 -35436112 - AluY SINE Alu -10 301 1 813 284 103 45 chr6 153843621 153844345 -35435209 - L1MC4a LINE L1 -140 6026 5257 501 307 66 17 chr6 153844804 153845166 -35434388 - HAL1 LINE L1 -986 1521 1142 219 125 0 0 chr6 153845166 153845206 -35434348 + (CATA)n Simple_repeat Simple_repeat 3 42 0 22 0 0 0 chr6 153845755 153845777 -35433777 + AT_rich Low_complexity Low_complexity 1 22 0 1907 150 20 10 chr6 153845838 153846005 -35433549 - AluJb SINE Alu -9 303 130 2626 40 0 3 chr6 153846005 153846307 -35433247 - AluY SINE Alu -10 301 1 1907 150 20 10 chr6 153846307 153846439 -35433115 - AluJb SINE Alu -182 130 1 1986 127 0 33 chr6 153846446 153846745 -35432809 - AluJb SINE Alu -12 300 12 1778 169 3 34 chr6 153846910 153847230 -35432324 - AluJo SINE Alu -2 310 1 2353 96 0 0 chr6 153847269 153847561 -35431993 - AluSc SINE Alu -17 292 1 1102 195 162 2 chr6 153848009 153848314 -35431240 - L1MB7 LINE L1 -36 6144 5794 1980 134 100 14 chr6 153848554 153848913 -35430641 - MLT1B LTR MaLR 0 390 1 1951 146 0 3 chr6 153849191 153849485 -35430069 - AluJb SINE Alu -19 293 1 245 281 64 82 chr6 153849559 153849705 -35429849 + MIR SINE MIR 1 145 -117 1738 188 59 34 chr6 153849705 153850061 -35429493 + MLT1A1 LTR MaLR 1 365 0 245 281 64 82 chr6 153850061 153850085 -35429469 + MIR SINE MIR 145 168 -94 816 156 31 0 chr6 153850267 153850395 -35429159 - FLAM_C SINE Alu -11 132 1 1821 182 3 0 chr6 153850527 153850829 -35428725 - AluJo SINE Alu -8 304 2 30 83 0 0 chr6 153850846 153850918 -35428636 + AT_rich Low_complexity Low_complexity 1 72 0 1040 169 0 6 chr6 153851133 153851310 -35428244 - AluJb SINE Alu 0 312 137 214 282 153 0 chr6 153851899 153851984 -35427570 + MIR SINE MIR 53 150 -112 2049 91 15 0 chr6 153852114 153852377 -35427177 + AluSx SINE Alu 1 267 -45 325 328 90 0 chr6 153852412 153852546 -35427008 - MIR SINE MIR -2 260 115 1755 129 18 7 chr6 153852719 153853022 -35426532 - AluSx SINE Alu 0 306 1 292 226 0 0 chr6 153853334 153853387 -35426167 - MER117 DNA MER1_type -50 147 95 314 151 65 43 chr6 153853575 153853668 -35425886 + Charlie5 DNA MER1_type 2366 2460 -152 1748 154 14 7 chr6 153853671 153853956 -35425598 - AluJo SINE Alu -25 287 1 1693 149 48 34 chr6 153854828 153855123 -35424431 + AluJo SINE Alu 1 299 -13 219 69 0 0 chr6 153856146 153856175 -35423379 + (T)n Simple_repeat Simple_repeat 1 29 0 2027 123 0 29 chr6 153856260 153856568 -35422986 + AluSx SINE Alu 1 299 -13 2215 162 56 21 chr6 153856630 153857061 -35422493 - L1MB7 LINE L1 -2 6182 5737 595 200 0 0 chr6 153857595 153857695 -35421859 + FAM SINE Alu 1 100 -85 474 189 0 0 chr6 153857750 153857824 -35421730 + FAM SINE Alu 85 158 -27 4034 192 53 21 chr6 153860309 153861125 -35418429 - MER21B LTR ERV1 -3 860 19 411 202 45 11 chr6 153861123 153861212 -35418342 - MER21B LTR ERV1 -757 106 15 * 3232 116 7 0 chr6 153861382 153861813 -35417741 + MER57B LTR ERV1 1 434 0 2543 37 0 7 chr6 153861920 153862216 -35417338 - AluY SINE Alu -17 294 1 1448 196 31 25 chr6 153862218 153862504 -35417050 - AluJb SINE Alu -16 296 9 1230 194 34 109 chr6 153863435 153863821 -35415733 - MLT1A1 LTR MaLR -8 357 1 194 340 0 0 chr6 153863857 153863910 -35415644 - L2 LINE L2 0 3313 3261 315 237 13 13 chr6 153863910 153863986 -35415568 + MLT1E LTR MaLR 1 76 -466 574 201 29 58 chr6 153864013 153864131 -35415423 - MER58B DNA MER1_type -2079 341 226 2334 104 0 10 chr6 153864131 153864438 -35415116 + AluSx SINE Alu 1 304 -8 574 201 29 58 chr6 153864438 153864458 -35415096 - MER58B DNA MER1_type -2194 226 207 227 250 18 0 chr6 153864576 153864632 -35414922 - MER58B DNA MER1_type -284 57 1 1278 249 98 48 chr6 153864646 153865084 -35414470 + MLT1E LTR MaLR 126 585 -8 359 253 10 10 chr6 153865150 153865249 -35414305 - MER103 DNA DNA -22 144 46 2163 95 10 10 chr6 153865456 153865751 -35413803 + AluSx SINE Alu 1 295 -17 644 240 12 41 chr6 153865772 153865943 -35413611 + FRAM SINE Alu 1 166 0 243 0 0 0 chr6 153865981 153866008 -35413546 + (CA)n Simple_repeat Simple_repeat 2 28 0 235 302 70 0 chr6 153866329 153866415 -35413139 - MIR SINE MIR -123 139 48 486 305 96 8 chr6 153866676 153866915 -35412639 - L3 LINE CR1 -66 1511 1252 1112 256 109 19 chr6 153866921 153867246 -35412308 - L1M4 LINE L1 -1166 4980 4686 261 0 0 0 chr6 153867246 153867275 -35412279 + (CA)n Simple_repeat Simple_repeat 2 30 0 1112 256 109 19 chr6 153867275 153867516 -35412038 - L1M4 LINE L1 -1460 4686 4363 901 285 133 7 chr6 153867626 153868102 -35411452 - L1ME3A LINE L1 -134 6030 5488 1185 228 104 85 chr6 153868105 153868636 -35410918 - MLT1H LTR MaLR -4 545 5 243 219 16 16 chr6 153868787 153868851 -35410703 - MLT1H-int LTR MaLR -171 1200 1137 227 418 0 29 chr6 153868887 153869057 -35410497 - MLT1H-int LTR MaLR -498 873 709 2420 120 27 19 chr6 153869110 153869175 -35410379 - Tigger2 DNA MER2_type 0 2718 2655 2368 100 0 0 chr6 153869175 153869476 -35410078 - AluSx SINE Alu -11 301 1 2420 120 27 19 chr6 153869476 153869776 -35409778 - Tigger2 DNA MER2_type -63 2655 2350 802 185 0 15 chr6 153869807 153869937 -35409617 - FLAM_C SINE Alu -14 129 2 489 246 100 0 chr6 153870308 153870438 -35409116 - MLT1H1 LTR MaLR -13 542 400 844 249 20 16 chr6 153870458 153870703 -35408851 - L1ME3A LINE L1 -1273 4873 4628 180 125 0 0 chr6 153870703 153870735 -35408819 + (CA)n Simple_repeat Simple_repeat 2 33 0 1395 200 0 15 chr6 153870896 153871166 -35408388 - AluJo SINE Alu -2 310 45 1566 240 88 94 chr6 153871174 153871380 -35408174 - L1ME3A LINE L1 -1743 4403 4197 2117 146 0 0 chr6 153871380 153871688 -35407866 - AluSx SINE Alu -4 308 1 1566 240 88 94 chr6 153871688 153871942 -35407612 - L1ME3A LINE L1 -1949 4197 3943 287 114 23 0 chr6 153871942 153871986 -35407568 + Alu SINE Alu 1 45 -258 899 191 38 0 chr6 153871986 153872143 -35407411 + AluJo/FRAM SINE Alu 137 299 -3 1566 240 88 94 chr6 153872143 153872498 -35407056 - L1ME3A LINE L1 -2201 3945 3548 1200 249 101 33 chr6 153873670 153874067 -35405487 + MLT1E LTR MaLR 52 475 -118 1401 193 52 91 chr6 153874072 153874229 -35405325 + MLT1B LTR MaLR 2 164 -226 669 224 18 88 chr6 153874229 153874324 -35405230 + FRAM SINE Alu 2 81 -221 1964 105 12 62 chr6 153874324 153874648 -35404906 - AluSx SINE Alu -4 308 1 669 224 18 88 chr6 153874648 153874722 -35404832 + FRAM SINE Alu 81 159 -7 1401 193 52 91 chr6 153874722 153874969 -35404585 + MLT1B LTR MaLR 164 390 0 530 220 51 0 chr6 153874969 153875079 -35404475 + MLT1E LTR MaLR 444 559 -8 2248 110 0 3 chr6 153875184 153875483 -35404071 + AluSx SINE Alu 4 301 -11 2383 62 3 3 chr6 153879152 153879443 -35400111 - AluY SINE Alu -20 291 1 2808 170 52 6 chr6 153879445 153879981 -35399573 - L1MB8 LINE L1 -6 6172 5612 2131 143 92 2 chr6 153881265 153881665 -35397889 - MER31A LTR ERV1 -49 436 1 21 0 0 0 chr6 153881890 153881911 -35397643 + AT_rich Low_complexity Low_complexity 1 21 0 596 278 53 27 chr6 153882085 153882272 -35397282 + L2 LINE L2 3118 3309 -4 1327 94 0 11 chr6 153882392 153882572 -35396982 + AluSg/x SINE Alu 127 304 -6 966 265 77 63 chr6 153882692 153883186 -35396368 + MLT1L LTR MaLR 7 507 -108 274 264 169 20 chr6 153883545 153883693 -35395861 + MER5A DNA MER1_type 6 175 -14 * 381 271 75 8 chr6 153883567 153883700 -35395854 - MER5B DNA MER1_type -29 149 8 516 245 20 27 chr6 153884326 153884473 -35395081 - L2 LINE L2 -1 3312 3167 653 213 0 53 chr6 153884524 153884762 -35394792 + MLT1D LTR MaLR 233 505 0 288 280 0 0 chr6 153884824 153884899 -35394655 - L2 LINE L2 -13 3300 3226 1829 140 0 18 chr6 153884929 153885214 -35394340 + AluJb SINE Alu 1 280 -32 234 91 0 0 chr6 153885214 153885247 -35394307 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 846 21 0 0 chr6 153885302 153885399 -35394155 + L1P LINE L1 4 100 -6046 862 185 38 8 chr6 153886714 153886974 -35392580 + L1MD2 LINE L1 6041 6359 0 22 0 0 0 chr6 153887038 153887060 -35392494 + AT_rich Low_complexity Low_complexity 1 22 0 246 153 0 0 chr6 153887190 153887249 -35392305 + A-rich Low_complexity Low_complexity 1 59 0 383 349 7 7 chr6 153887744 153887890 -35391664 - L2 LINE L2 -196 3076 2931 255 180 27 81 chr6 153887929 153887958 -35391596 - L1ME4a LINE L1 -34 6087 6058 2045 106 0 11 chr6 153887958 153888271 -35391283 + AluSx SINE Alu 2 311 0 255 180 27 81 chr6 153888271 153888351 -35391203 - L1ME4a LINE L1 -63 6058 5983 193 356 131 26 chr6 153888420 153888999 -35390555 + L2 LINE L2 568 1207 -2107 1632 144 96 0 chr6 153889065 153889335 -35390219 + AluSq SINE Alu 1 296 -17 2121 142 58 34 chr6 153889346 153889726 -35389828 + MSTA LTR MaLR 1 389 -39 2035 128 16 3 chr6 153889726 153890032 -35389522 + AluSg SINE Alu 1 310 0 316 127 0 18 chr6 153890167 153890222 -35389332 + MSTA LTR MaLR 373 426 0 2684 203 79 127 chr6 153890228 153890347 -35389207 - L1MC5 LINE L1 -78 7883 7760 1987 137 7 7 chr6 153890347 153890647 -35388907 - AluSx SINE Alu -12 300 1 2684 203 79 127 chr6 153890647 153890732 -35388822 - L1MC5 LINE L1 -201 7760 7672 1525 38 60 0 chr6 153890732 153890915 -35388639 - L1PA5 LINE L1 -6 6148 5955 2684 203 79 127 chr6 153890915 153891740 -35387814 - L1MC5 LINE L1 -289 7672 6809 329 180 33 0 chr6 153891740 153891801 -35387753 - Alu SINE Alu 0 302 240 2684 203 79 127 chr6 153891801 153891813 -35387741 - L1MC5 LINE L1 -1152 6809 6798 910 121 0 15 chr6 153891813 153891945 -35387609 - FLAM_C SINE Alu 0 133 4 2684 203 79 127 chr6 153891945 153892241 -35387313 - L1MC5 LINE L1 -1163 6798 6542 2336 97 0 3 chr6 153892503 153892813 -35386741 - AluSx SINE Alu -3 309 1 306 357 65 5 chr6 153892840 153893025 -35386529 - L1MC4a LINE L1 -1537 6271 6076 756 279 29 24 chr6 153893064 153893272 -35386282 - MER58A DNA MER1_type 0 224 16 851 338 156 27 chr6 153893407 153894325 -35385229 + L2 LINE L2 1942 2977 -337 220 339 139 9 chr6 153894468 153894583 -35384971 + L2 LINE L2 3143 3272 0 401 337 69 33 chr6 153894812 153895147 -35384407 - L1MEd LINE L1 -5043 1076 730 1907 159 47 25 chr6 153895653 153896018 -35383536 - THE1C LTR MaLR -2 373 1 507 283 43 31 chr6 153896065 153896278 -35383276 - L1MC4a LINE L1 -372 5749 5567 1759 118 4 8 chr6 153896368 153896623 -35382931 + AluSx SINE Alu 58 311 -1 378 0 0 0 chr6 153897685 153897727 -35381827 + (CA)n Simple_repeat Simple_repeat 2 43 0 5196 224 56 43 chr6 153897945 153898057 -35381497 - L1MC4 LINE L1 0 8042 7933 1966 142 0 10 chr6 153898057 153898359 -35381195 + AluJb SINE Alu 1 299 -13 5196 224 56 43 chr6 153898359 153899080 -35380474 - L1MC4 LINE L1 -109 7933 7222 2351 77 7 0 chr6 153899080 153899367 -35380187 - AluSx SINE Alu -12 300 12 5196 224 56 43 chr6 153899367 153900080 -35379474 - L1MC4 LINE L1 -820 7222 6476 2188 134 0 3 chr6 153900693 153900992 -35378562 - AluSx SINE Alu -14 298 1 2354 66 0 10 chr6 153901585 153901873 -35377681 - AluSg SINE Alu -25 285 1 2011 154 3 0 chr6 153902158 153902457 -35377097 - AluJb SINE Alu -12 300 1 291 292 22 0 chr6 153902457 153902594 -35376960 - L1MEd LINE L1 -4124 2186 2047 1736 131 64 32 chr6 153902777 153903090 -35376464 - Tigger2a DNA MER2_type -91 343 21 1036 263 96 39 chr6 153903188 153904004 -35375550 - L1MEd LINE L1 -4616 1694 786 245 200 15 15 chr6 153904122 153904187 -35375367 - L1MEd LINE L1 -5460 659 595 2199 121 0 6 chr6 153904970 153905283 -35374271 + AluSx SINE Alu 1 311 -1 2455 74 0 3 chr6 153905285 153905594 -35373960 + AluY SINE Alu 3 310 -1 189 0 0 0 chr6 153906477 153906498 -35373056 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1743 135 25 7 chr6 153906500 153906782 -35372772 - AluJb SINE Alu -25 287 1 783 191 15 0 chr6 153907589 153907720 -35371834 - FLAM_A SINE Alu 0 133 1 2259 116 0 3 chr6 153908036 153908337 -35371217 - AluSx SINE Alu -12 300 1 413 253 133 20 chr6 153908343 153908493 -35371061 - MIR3 SINE MIR -34 174 8 1609 179 21 21 chr6 153908582 153908862 -35370692 + AluJb SINE Alu 1 280 -32 26 30 0 0 chr6 153908864 153908897 -35370657 + AT_rich Low_complexity Low_complexity 1 33 0 1135 147 6 0 chr6 153909611 153909781 -35369773 + AluJb SINE Alu 136 306 -6 1803 149 25 7 chr6 153909781 153910086 -35369468 + AluSx SINE Alu 1 310 0 2507 57 3 25 chr6 153910154 153910472 -35369082 - AluY SINE Alu 0 311 1 2303 133 26 32 chr6 153910638 153911015 -35368539 - THE1C LTR MaLR 0 375 1 33 25 0 0 chr6 153911191 153911231 -35368323 + AT_rich Low_complexity Low_complexity 1 40 0 210 208 0 0 chr6 153911251 153911304 -35368250 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 388 210 0 0 chr6 153911517 153911579 -35367975 + AluJ/FLAM SINE Alu 1 62 -240 1135 146 0 6 chr6 153911579 153911750 -35367804 - AluJb SINE Alu -142 170 1 257 260 39 0 chr6 153911806 153911883 -35367671 + L1ME4a LINE L1 5968 6047 -74 1698 141 69 4 chr6 153912369 153912646 -35366908 - AluJb SINE Alu -13 299 5 2651 146 81 98 chr6 153912704 153912940 -35366614 - L1MB2 LINE L1 -37 6134 5896 2097 110 0 14 chr6 153912940 153913230 -35366324 - AluSq SINE Alu -16 297 12 2651 146 81 98 chr6 153913230 153913515 -35366039 - L1MB2 LINE L1 -275 5896 5624 2252 103 26 0 chr6 153913515 153913817 -35365737 + AluSp SINE Alu 2 311 -2 2651 146 81 98 chr6 153913817 153913957 -35365597 - L1MB2 LINE L1 -547 5624 5483 671 216 9 0 chr6 153914163 153914279 -35365275 - FLAM_C SINE Alu -25 118 2 1186 161 50 23 chr6 153914282 153914624 -35364930 - L1MB2 LINE L1 -676 5495 5145 1413 153 77 17 chr6 153914798 153915085 -35364469 + AluJb SINE Alu 5 308 -4 2379 101 0 0 chr6 153915755 153916063 -35363491 - AluSg SINE Alu -2 308 1 305 309 114 0 chr6 153917318 153917441 -35362113 + MIR SINE MIR 24 160 -102 28 29 0 0 chr6 153917966 153918001 -35361553 + AT_rich Low_complexity Low_complexity 1 35 0 2249 107 0 3 chr6 153918024 153918322 -35361232 + AluSx SINE Alu 1 297 -15 272 229 33 0 chr6 153918322 153918383 -35361171 + L1ME4a LINE L1 5957 6019 -102 426 218 154 59 chr6 153918425 153918645 -35360909 + L1ME4a LINE L1 5879 6119 -2 1773 260 111 113 chr6 153918782 153919039 -35360515 + L2 LINE L2 651 907 -2407 2137 85 4 4 chr6 153919039 153919311 -35360243 - AluSg SINE Alu -38 272 1 1773 260 111 113 chr6 153919311 153920612 -35358942 + L2 LINE L2 907 2206 -1108 1949 116 133 21 chr6 153920612 153920949 -35358605 - THE1C LTR MaLR 0 375 1 1773 260 111 113 chr6 153920949 153921222 -35358332 + L2 LINE L2 2206 2478 -836 2734 213 112 61 chr6 153921248 153921496 -35358058 - L1ME1 LINE L1 -6 6160 5926 1863 149 30 7 chr6 153921496 153921798 -35357756 - AluJb SINE Alu -3 309 1 2734 213 112 61 chr6 153921798 153921828 -35357726 - L1ME1 LINE L1 -240 5926 5899 760 144 0 0 chr6 153921828 153921932 -35357622 - U6 snRNA snRNA -3 104 1 2734 213 112 61 chr6 153921932 153922606 -35356948 - L1ME1 LINE L1 -267 5899 5140 2418 76 6 31 chr6 153922606 153922923 -35356631 - AluSq SINE Alu -4 309 1 2734 213 112 61 chr6 153922923 153923297 -35356257 - L1ME1 LINE L1 -1026 5140 4787 7611 54 12 0 chr6 153923508 153924603 -35354951 - L1PA8 LINE L1 0 6172 5078 2947 127 27 2 chr6 153924961 153925371 -35354183 - MSTB LTR MaLR -4 422 3 2304 82 7 20 chr6 153926407 153926712 -35352842 - AluSc SINE Alu -8 301 1 265 270 0 27 chr6 153926723 153926797 -35352757 + CT-rich Low_complexity Low_complexity 1 72 0 23 0 0 0 chr6 153926798 153926821 -35352733 + AT_rich Low_complexity Low_complexity 1 23 0 1294 261 140 29 chr6 153927399 153928300 -35351254 - L2 LINE L2 -5 3308 2302 1142 151 62 10 chr6 153928888 153929080 -35350474 + MER2 DNA MER2_type 1 202 -143 852 137 0 38 chr6 153929080 153929211 -35350343 + FLAM_C SINE Alu 1 126 -17 309 89 0 0 chr6 153929214 153929259 -35350295 + (CA)n Simple_repeat Simple_repeat 2 46 0 340 221 15 0 chr6 153929330 153929398 -35350156 + MER2 DNA MER2_type 267 335 -10 2383 82 7 0 chr6 153930831 153931124 -35348430 + AluSx SINE Alu 18 312 0 2030 123 20 3 chr6 153931590 153931890 -35347664 + AluSx SINE Alu 1 305 -7 376 259 118 15 chr6 153932068 153932203 -35347351 - MIR SINE MIR -112 150 2 2487 81 0 0 chr6 153932249 153932557 -35346997 - AluY SINE Alu -3 308 1 1747 162 0 32 chr6 153933638 153933947 -35345607 - AluJb SINE Alu -13 299 1 213 219 0 0 chr6 153934238 153934279 -35345275 - L2 LINE L2 -11 3302 3262 2462 71 7 7 chr6 153934444 153934753 -35344801 - AluY SINE Alu -2 309 1 243 357 84 29 chr6 153934873 153935111 -35344443 + L2 LINE L2 2811 3061 -211 226 184 58 107 chr6 153935374 153935477 -35344077 - HsTC2 DNA Tc2 -208 1690 1593 2311 94 19 10 chr6 153935536 153935843 -35343711 - AluSx SINE Alu -2 310 1 25 0 0 0 chr6 153936117 153936142 -35343412 + AT_rich Low_complexity Low_complexity 1 25 0 261 309 99 0 chr6 153936285 153936366 -35343188 + L2 LINE L2 3153 3241 -31 2198 108 23 7 chr6 153936543 153936849 -35342705 - AluSx SINE Alu -1 311 1 626 204 9 0 chr6 153937075 153937188 -35342366 - MER58A DNA MER1_type 0 224 111 340 235 15 0 chr6 153937237 153937305 -35342249 - MER58A DNA MER1_type -2 105 37 207 57 0 94 chr6 153937350 153937403 -35342151 + (TAAAA)n Simple_repeat Simple_repeat 4 51 0 273 109 0 0 chr6 153937704 153937750 -35341804 + (T)n Simple_repeat Simple_repeat 1 46 0 806 149 88 19 chr6 153937871 153938184 -35341370 - L1MCb LINE L1 -4501 2063 1641 5667 129 25 5 chr6 153938187 153939060 -35340494 + MER4D LTR ERV1 4 894 -9 3435 178 91 80 chr6 153939110 153939732 -35339822 - L1MCb LINE L1 -4853 1192 578 2022 134 3 7 chr6 153939732 153940022 -35339532 - AluSx SINE Alu -23 289 1 3435 178 91 80 chr6 153940022 153940643 -35338911 - L1MCb LINE L1 -5467 578 337 2141 133 0 3 chr6 153940643 153940951 -35338603 - AluSx SINE Alu -5 307 1 3435 178 91 80 chr6 153940951 153941281 -35338273 - L1MCb LINE L1 -5708 337 12 2406 82 0 7 chr6 153941281 153941584 -35337970 - AluSc SINE Alu -8 301 1 1962 101 109 24 chr6 153941755 153942131 -35337423 + LTR23 LTR ERV1 29 436 -1 21 82 0 0 chr6 153942151 153942200 -35337354 + AT_rich Low_complexity Low_complexity 1 49 0 831 165 0 0 chr6 153942206 153942339 -35337215 + FLAM_C SINE Alu 1 133 0 196 316 76 13 chr6 153942633 153942712 -35336842 - MIR SINE MIR -105 103 20 1195 163 69 48 chr6 153942805 153943094 -35336460 - AluSx SINE Alu -7 295 1 784 163 0 15 chr6 153943338 153943473 -35336081 - FLAM_C SINE Alu 0 133 1 700 318 50 0 chr6 153943599 153943849 -35335705 + ERVL LTR ERVL 1788 2069 -2927 2185 84 18 3 chr6 153943904 153944188 -35335366 - AluSq SINE Alu -25 288 1 27 49 0 0 chr6 153944560 153944601 -35334953 + AT_rich Low_complexity Low_complexity 1 41 0 700 158 298 0 chr6 153944605 153944763 -35334791 - MER2 DNA MER2_type -140 205 1 21 0 0 0 chr6 153944900 153944921 -35334633 + AT_rich Low_complexity Low_complexity 1 21 0 480 264 169 7 chr6 153945787 153945935 -35333619 + MER5A DNA MER1_type 4 175 -14 1086 173 59 0 chr6 153946020 153946240 -35333314 - Tigger7 DNA MER2_type 0 2487 2255 412 285 103 0 chr6 153946486 153946651 -35332903 + L1MC4a LINE L1 5747 5928 -1880 189 0 0 0 chr6 153946681 153946702 -35332852 + (TG)n Simple_repeat Simple_repeat 2 22 0 2160 110 3 3 chr6 153947495 153947786 -35331768 - AluSg SINE Alu -19 291 1 199 234 43 0 chr6 153948637 153948684 -35330870 - MIR SINE MIR -213 49 1 180 263 35 35 chr6 153949971 153950028 -35329526 + L3 LINE CR1 1512 1568 -9 2138 115 7 10 chr6 153950318 153950623 -35328931 + AluSp SINE Alu 1 304 -9 2674 23 0 0 chr6 153952532 153952832 -35326722 - AluYb8 SINE Alu -18 300 1 206 259 172 0 chr6 153953478 153953536 -35326018 - L2 LINE L2 -2 3311 3244 453 225 0 50 chr6 153953632 153953752 -35325802 - MER94 DNA DNA -20 114 1 353 279 152 13 chr6 153953941 153954099 -35325455 + MER5A DNA MER1_type 10 189 0 666 145 81 16 chr6 153954432 153954556 -35324998 + FLAM_A SINE Alu 2 133 0 369 0 0 0 chr6 153954556 153954597 -35324957 + (TG)n Simple_repeat Simple_repeat 1 41 0 26 30 0 0 chr6 153955038 153955071 -35324483 + AT_rich Low_complexity Low_complexity 1 33 0 798 231 14 56 chr6 153955123 153955339 -35324215 - MER58C DNA MER1_type -8 207 1 2107 109 7 7 chr6 153955563 153955848 -35323706 - AluSx SINE Alu -25 287 3 1523 151 139 30 chr6 153956781 153957119 -35322435 + THE1C LTR MaLR 1 375 0 2280 154 48 24 chr6 153957269 153957614 -35321940 + MSTB LTR MaLR 1 359 -67 1955 147 3 0 chr6 153957614 153957906 -35321648 - AluJb SINE Alu -18 294 2 2280 154 48 24 chr6 153957906 153957976 -35321578 + MSTB LTR MaLR 359 426 0 242 340 0 20 chr6 153958915 153959068 -35320486 + G-rich Low_complexity Low_complexity 6 155 0 182 269 30 82 chr6 153960750 153960884 -35318670 - L2 LINE L2 -75 3238 3112 1977 147 0 10 chr6 153961327 153961626 -35317928 - AluJb SINE Alu -16 296 1 2080 130 20 0 chr6 153962706 153962999 -35316555 - AluSx SINE Alu -13 299 1 2302 86 10 0 chr6 153963463 153963755 -35315799 - AluSx SINE Alu 0 312 18 335 221 15 0 chr6 153965184 153965252 -35314302 - MER2 DNA MER2_type -10 335 267 309 89 0 0 chr6 153965323 153965368 -35314186 + (TG)n Simple_repeat Simple_repeat 2 46 0 847 151 0 0 chr6 153965383 153965502 -35314052 - FLAM_C SINE Alu -24 119 1 1094 146 11 11 chr6 153965515 153965693 -35313861 - MER2 DNA MER2_type -167 178 1 1260 268 136 27 chr6 153966281 153967183 -35312371 + L2 LINE L2 2302 3308 -5 28 71 0 0 chr6 153967696 153967752 -35311802 + AT_rich Low_complexity Low_complexity 1 56 0 1375 178 34 55 chr6 153968629 153968819 -35310735 + AluJb SINE Alu 1 184 -128 2446 72 3 3 chr6 153968819 153969125 -35310429 - AluSg SINE Alu -4 306 1 1375 178 34 55 chr6 153969125 153969227 -35310327 + AluJb SINE Alu 184 287 -25 243 0 0 0 chr6 153969227 153969254 -35310300 + (TG)n Simple_repeat Simple_repeat 1 27 0 2090 119 10 0 chr6 153972301 153972428 -35307126 + AluSx SINE Alu 1 125 -187 207 0 0 0 chr6 153972428 153972451 -35307103 + (CA)n Simple_repeat Simple_repeat 2 24 0 2090 119 10 0 chr6 153972451 153972625 -35306929 + AluSx SINE Alu 125 305 -7 180 200 0 0 chr6 153972895 153972935 -35306619 + A-rich Low_complexity Low_complexity 1 40 0 736 189 133 82 chr6 153975308 153975541 -35304013 + MIR SINE MIR 18 262 0 325 323 13 20 chr6 153976841 153976977 -35302577 + MIR3 SINE MIR 2 135 -95 223 255 78 0 chr6 153978523 153978574 -35300980 + L2 LINE L2 3210 3264 -8 3025 204 159 40 chr6 153979519 153980474 -35299080 + Charlie1a DNA MER1_type 9 1077 -378 1337 223 50 13 chr6 153980481 153980799 -35298755 - MER58B DNA MER1_type -11 330 1 1489 163 60 23 chr6 153980800 153981149 -35298405 + Charlie1a DNA MER1_type 1084 1445 -10 2081 94 0 22 chr6 153982812 153983089 -35296465 + AluSg SINE Alu 9 279 -31 22 0 0 0 chr6 153983090 153983112 -35296442 + GC_rich Low_complexity Low_complexity 1 22 0 268 314 165 8 chr6 153983184 153983305 -35296249 - L2 LINE L2 -4 3268 3129 781 184 61 0 chr6 153983435 153983582 -35295972 - FRAM SINE Alu -10 156 1 432 219 54 22 chr6 153983978 153984137 -35295417 + L1MC/D LINE L1 5653 5816 -338 2276 84 63 20 chr6 153984160 153984507 -35295047 - THE1B LTR MaLR -2 362 1 284 230 92 112 chr6 153984982 153985134 -35294420 - L2 LINE L2 -2 3270 3122 182 349 111 8 chr6 153985758 153985884 -35293670 - L2 LINE L2 -4 3309 3171 1271 113 0 0 chr6 153986086 153986254 -35293300 - AluSg/x SINE Alu -16 296 129 21 57 0 0 chr6 153986711 153986746 -35292808 + AT_rich Low_complexity Low_complexity 1 35 0 239 277 54 69 chr6 153987237 153987367 -35292187 - MIR SINE MIR -115 147 20 2439 87 0 3 chr6 153987699 153988009 -35291545 + AluSc SINE Alu 1 309 0 296 246 48 24 chr6 153988847 153988973 -35290581 + L1MC4 LINE L1 7908 8036 -6 1842 97 127 0 chr6 153989111 153989378 -35290176 - AluSx SINE Alu 0 302 2 315 264 157 35 chr6 153989380 153989577 -35289977 - HAL1 LINE L1 -21 2486 2266 1805 189 0 0 chr6 153989678 153989974 -35289580 - AluJb SINE Alu -14 298 3 2122 126 23 0 chr6 153989980 153990282 -35289272 - AluSx SINE Alu -3 309 1 22 0 0 0 chr6 153990978 153991000 -35288554 + AT_rich Low_complexity Low_complexity 1 22 0 602 200 0 9 chr6 153992321 153992431 -35287123 + FLAM_A SINE Alu 1 109 -33 21 0 0 0 chr6 153992616 153992637 -35286917 + AT_rich Low_complexity Low_complexity 1 21 0 284 296 130 35 chr6 153993259 153993374 -35286180 - MIR SINE MIR -123 139 14 1493 129 165 39 chr6 153994107 153994272 -35285282 + THE1C LTR MaLR 1 144 -231 297 0 0 0 chr6 153994272 153994305 -35285249 + (TC)n Simple_repeat Simple_repeat 1 33 0 1493 129 165 39 chr6 153994305 153994472 -35285082 + THE1C LTR MaLR 144 375 0 186 71 0 0 chr6 153994602 153994630 -35284924 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 300 248 50 50 chr6 153995479 153995580 -35283974 + L1ME4a LINE L1 5793 5893 -228 1893 170 3 0 chr6 153996673 153996967 -35282587 + AluSx SINE Alu 1 295 -17 521 314 173 29 chr6 153997152 153997419 -35282135 - L1M4 LINE L1 -913 5233 5006 1681 182 0 45 chr6 153997419 153997727 -35281827 + AluJo SINE Alu 1 294 -18 521 314 173 29 chr6 153997727 153998019 -35281535 - L1M4 LINE L1 -1140 5006 4593 2173 100 16 3 chr6 153998136 153998445 -35281109 + AluSp SINE Alu 1 313 0 25 0 0 0 chr6 153998720 153998745 -35280809 + AT_rich Low_complexity Low_complexity 1 25 0 1126 121 20 15 chr6 153999418 153999617 -35279937 + L1MA5A LINE L1 4130 4329 -1817 2245 123 0 3 chr6 153999617 153999926 -35279628 - AluSx SINE Alu -4 308 1 5487 130 48 33 chr6 153999926 154000048 -35279506 + L1MA5A LINE L1 4843 4962 -1335 2246 103 3 23 chr6 154000048 154000358 -35279196 - AluSp SINE Alu -4 309 6 5487 130 48 33 chr6 154000358 154000724 -35278830 + L1MA5A LINE L1 4962 5321 -976 180 0 0 0 chr6 154000724 154000744 -35278810 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5487 130 48 33 chr6 154000744 154001629 -35277925 + L1MA5A LINE L1 5321 6224 -73 1445 118 22 26 chr6 154001629 154001857 -35277697 + MER30 DNA MER1_type 2 228 -2 5487 130 48 33 chr6 154001857 154001933 -35277621 + L1MA5A LINE L1 6224 6297 0 422 217 141 49 chr6 154002189 154002373 -35277181 - L1MC/D LINE L1 -1986 5822 5622 1625 174 42 11 chr6 154002395 154002682 -35276872 + AluJo SINE Alu 4 299 -13 288 0 0 0 chr6 154002682 154002714 -35276840 + (TG)n Simple_repeat Simple_repeat 2 33 0 496 250 85 28 chr6 154002980 154003156 -35276398 + MIR SINE MIR 45 230 -32 1476 266 156 39 chr6 154003898 154004930 -35274624 + HAL1 LINE L1 769 1921 -586 347 193 110 28 chr6 154005125 154005234 -35274320 + HAL1b LINE L1 730 847 -501 238 268 28 84 chr6 154005425 154005604 -35273950 + HAL1 LINE L1 2334 2502 -5 1472 90 10 0 chr6 154005614 154005814 -35273740 - L1PA8A LINE L1 -18 6113 5912 243 268 161 13 chr6 154006176 154006327 -35273227 - MIR3 SINE MIR -64 144 1 349 228 336 7 chr6 154007045 154007194 -35272360 - MIR SINE MIR -56 206 9 1800 166 80 40 chr6 154007499 154008024 -35271530 - Charlie1a DNA MER1_type 0 1455 910 * 2447 209 102 13 chr6 154008019 154008494 -35271060 - Charlie1a DNA MER1_type -1976 785 229 1805 77 81 4 chr6 154008494 154008741 -35270813 - AluY SINE Alu -45 266 1 2447 209 102 13 chr6 154008741 154008953 -35270601 - Charlie1a DNA MER1_type -2532 229 37 492 322 68 23 chr6 154009067 154009331 -35270223 - MER102b DNA MER1_type -18 323 48 30 27 0 0 chr6 154009617 154009654 -35269900 + AT_rich Low_complexity Low_complexity 1 37 0 289 254 202 18 chr6 154009853 154009967 -35269587 + L2 LINE L2 2928 3062 -251 317 260 171 16 chr6 154009970 154010093 -35269461 + L2 LINE L2 3172 3313 0 219 103 0 0 chr6 154010336 154010375 -35269179 + (CTAA)n Simple_repeat Simple_repeat 2 40 0 257 243 112 28 chr6 154010566 154010673 -35268881 + L2 LINE L2 3182 3297 -16 457 108 140 0 chr6 154011764 154011857 -35267697 + L1MA8 LINE L1 6185 6290 -1 573 183 25 0 chr6 154012773 154012893 -35266661 + MER94 DNA DNA 1 123 -11 21 0 0 0 chr6 154013121 154013142 -35266412 + AT_rich Low_complexity Low_complexity 1 21 0 608 225 249 5 chr6 154013146 154013355 -35266199 - MIR SINE MIR -1 261 2 640 228 179 0 chr6 154013648 154013832 -35265722 - MIR SINE MIR 0 262 46 1590 199 101 25 chr6 154014163 154014530 -35265024 + MSTD LTR MaLR 2 396 0 447 222 42 84 chr6 154015007 154015174 -35264380 - MIR SINE MIR 0 262 103 476 171 0 0 chr6 154015192 154015274 -35264280 - Tigger5 DNA MER2_type 0 2323 2242 408 188 0 0 chr6 154015271 154015340 -35264214 + Tigger5 DNA MER2_type 2249 2317 -6 * 478 177 0 0 chr6 154015342 154015421 -35264133 - Tigger5 DNA MER2_type -2244 79 1 384 269 96 36 chr6 154015576 154015743 -35263811 - MIR SINE MIR -77 185 9 1133 184 81 53 chr6 154015743 154016161 -35263393 + MER113 DNA MER1_type? 1 430 -91 1777 135 25 53 chr6 154016493 154016811 -35262743 - AluJb SINE Alu -2 310 2 191 254 220 17 chr6 154016909 154017027 -35262527 + MIR SINE MIR 106 247 -15 225 0 0 0 chr6 154017083 154017108 -35262446 + (T)n Simple_repeat Simple_repeat 1 25 0 238 348 137 6 chr6 154017356 154017517 -35262037 - L2 LINE L2 -683 2631 2450 1477 206 10 13 chr6 154017724 154018034 -35261520 + AluSx SINE Alu 3 311 -1 185 313 0 0 chr6 154018102 154018166 -35261388 - L2 LINE L2 -1539 1775 1712 1044 75 3 117 chr6 154019338 154019620 -35259934 - AluSc SINE Alu -59 250 1 281 257 0 27 chr6 154019631 154019705 -35259849 + CT-rich Low_complexity Low_complexity 1 72 0 270 0 0 0 chr6 154019711 154019741 -35259813 + (A)n Simple_repeat Simple_repeat 1 30 0 2110 108 7 7 chr6 154019750 154020047 -35259507 + AluSx SINE Alu 1 297 -15 1243 155 9 23 chr6 154021862 154022081 -35257473 - AluSq SINE Alu -13 300 85 1471 99 0 0 chr6 154022081 154022263 -35257291 - AluSx SINE Alu -130 182 1 604 27 14 0 chr6 154022266 154022339 -35257215 - AluSq/x SINE Alu -179 133 60 24 0 0 0 chr6 154022415 154022439 -35257115 + AT_rich Low_complexity Low_complexity 1 24 0 2077 147 0 3 chr6 154022502 154022815 -35256739 + AluJb SINE Alu 1 312 0 1777 176 33 13 chr6 154023104 154023239 -35256315 + AluJo SINE Alu 1 132 -180 2180 102 0 46 chr6 154023239 154023564 -35255990 + AluSq SINE Alu 1 310 -3 1777 176 33 13 chr6 154023564 154023730 -35255824 + AluJo SINE Alu 132 308 -4 21 0 0 0 chr6 154024188 154024209 -35255345 + AT_rich Low_complexity Low_complexity 1 21 0 2311 115 0 0 chr6 154024591 154024896 -35254658 + AluSx SINE Alu 1 305 -7 1920 86 6 133 chr6 154026438 154026775 -35252779 + AluSx SINE Alu 1 294 -18 2200 123 3 0 chr6 154027234 154027543 -35252011 + AluSx SINE Alu 1 310 -2 1004 143 6 23 chr6 154027674 154027849 -35251705 - FRAM SINE Alu -4 172 1 206 308 56 65 chr6 154027990 154028097 -35251457 - L2 LINE L2 -5 3267 3162 2337 97 3 0 chr6 154029222 154029533 -35250021 + AluSq SINE Alu 1 312 -1 456 19 0 0 chr6 154029582 154029635 -35249919 + (TG)n Simple_repeat Simple_repeat 2 54 0 186 209 0 0 chr6 154029637 154029680 -35249874 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 271 151 38 0 chr6 154030471 154030524 -35249030 - Alu SINE Alu -3 299 245 1770 152 31 7 chr6 154030531 154030821 -35248733 + AluJb SINE Alu 1 297 -15 2269 89 17 0 chr6 154031558 154031860 -35247694 + AluSx SINE Alu 1 307 -5 195 304 76 0 chr6 154032780 154032872 -35246682 - MIR SINE MIR -59 203 105 23 0 0 0 chr6 154033242 154033265 -35246289 + AT_rich Low_complexity Low_complexity 1 23 0 1727 125 68 18 chr6 154033378 154033657 -35245897 + AluJb SINE Alu 11 303 -9 304 234 0 0 chr6 154034007 154034071 -35245483 - L1MC4 LINE L1 -1337 6705 6642 2297 112 0 0 chr6 154034156 154034461 -35245093 - AluSx SINE Alu -7 305 1 2201 108 0 3 chr6 154035387 154035698 -35243856 + AluSc SINE Alu 1 310 0 867 216 197 38 chr6 154035884 154036199 -35243355 - MLT1A1 LTR MaLR 0 365 1 324 256 64 0 chr6 154036297 154036375 -35243179 + L2 LINE L2 3140 3222 -50 3572 109 35 6 chr6 154037134 154037646 -35241908 - MER1A DNA MER1_type 0 527 1 199 316 13 53 chr6 154037765 154037841 -35241713 + L3b LINE CR1 1191 1263 -320 208 359 104 0 chr6 154037882 154037988 -35241566 + MIR3 SINE MIR 42 158 -50 197 233 282 19 chr6 154038699 154038802 -35240752 + L2 LINE L2 3138 3267 -5 1881 135 0 10 chr6 154039587 154039875 -35239679 - AluJb SINE Alu -22 290 6 302 260 42 0 chr6 154089958 154090054 -35189500 + MER102b DNA MER1_type 242 341 0 2418 88 3 0 chr6 154090304 154090609 -35188945 - AluSg SINE Alu 0 310 2 192 135 81 14 chr6 154090687 154090761 -35188793 + CT-rich Low_complexity Low_complexity 6 84 0 406 108 27 0 chr6 154091520 154091594 -35187960 + CT-rich Low_complexity Low_complexity 1 76 0 1601 188 31 3 chr6 154091594 154091882 -35187672 - AluJo SINE Alu -16 296 1 2206 130 0 0 chr6 154091885 154092185 -35187369 - AluSx SINE Alu -12 300 1 2139 173 27 3 chr6 154092689 154093059 -35186495 + MER95 LTR ERV 14 392 -39 24 91 0 0 chr6 154093463 154093529 -35186025 + AT_rich Low_complexity Low_complexity 1 66 0 478 230 268 28 chr6 154093529 154093742 -35185812 - Charlie2 DNA MER1_type -2518 264 1 2416 52 28 0 chr6 154093762 154094051 -35185503 + AluY SINE Alu 1 297 -14 1481 170 51 18 chr6 154094360 154094636 -35184918 + AluJo SINE Alu 12 296 -16 2270 116 0 7 chr6 154095350 154095651 -35183903 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr6 154095794 154095819 -35183735 + AT_rich Low_complexity Low_complexity 1 25 0 314 295 8 41 chr6 154095958 154096080 -35183474 - L2 LINE L2 -905 2409 2292 831 173 67 48 chr6 154096211 154096419 -35183135 + Charlie2 DNA MER1_type 1 212 -2570 3586 218 117 34 chr6 154096444 154097689 -35181865 + Charlie2a DNA MER1_type 1271 2619 -243 2798 74 11 0 chr6 154097721 154098072 -35181482 - MER1A DNA MER1_type 0 529 175 2059 120 3 16 chr6 154098134 154098306 -35181248 - AluSx SINE Alu -8 304 136 2081 75 0 19 chr6 154098306 154098574 -35180980 - AluY SINE Alu -10 301 39 2059 120 3 16 chr6 154098574 154098709 -35180845 - AluSx SINE Alu -176 136 1 927 178 160 76 chr6 154098803 154098994 -35180560 - AluJo SINE Alu 0 302 80 2251 100 3 0 chr6 154098994 154099285 -35180269 + AluSc SINE Alu 1 292 -17 927 178 160 76 chr6 154099285 154099368 -35180186 - AluJo SINE Alu -222 80 5 251 235 47 12 chr6 154100507 154100592 -35178962 + MER112 DNA MER1_type 5 92 -168 288 0 0 0 chr6 154100595 154100627 -35178927 + (TA)n Simple_repeat Simple_repeat 2 33 0 1586 193 49 26 chr6 154100648 154101034 -35178520 + MLT1C LTR MaLR 8 385 -5 2458 71 0 0 chr6 154101399 154101695 -35177859 + AluY SINE Alu 1 296 -15 282 295 169 18 chr6 154101872 154102054 -35177500 + MIR SINE MIR 38 246 -16 2340 107 0 0 chr6 154102192 154102500 -35177054 + AluSx SINE Alu 1 308 -4 537 285 160 10 chr6 154102764 154103015 -35176539 - MLT1J LTR MaLR -140 339 70 180 0 0 0 chr6 154104137 154104157 -35175397 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 484 287 157 0 chr6 154105024 154105240 -35174314 + MIR SINE MIR 2 251 -11 270 306 95 73 chr6 154106687 154106852 -35172702 + MIR SINE MIR 19 179 -83 2124 113 0 33 chr6 154106852 154106991 -35172563 + AluSx SINE Alu 1 143 -169 2148 87 0 28 chr6 154106991 154107280 -35172274 + AluSc SINE Alu 3 283 -26 312 27 0 0 chr6 154107280 154107317 -35172237 + (CATA)n Simple_repeat Simple_repeat 2 38 0 2124 113 0 33 chr6 154107317 154107478 -35172076 + AluSx SINE Alu 141 292 -20 270 306 95 73 chr6 154107478 154107544 -35172010 + MIR SINE MIR 179 255 -7 531 281 97 0 chr6 154107670 154107855 -35171699 + MIR SINE MIR 28 230 -32 39555 80 9 7 chr6 154108213 154114342 -35165212 - L1PA6 LINE L1 -8 6146 11 1658 199 3 0 chr6 154114408 154114710 -35164844 + AluJb SINE Alu 1 303 -9 465 291 213 28 chr6 154114845 154115206 -35164348 - LTR16A1 LTR ERVL -29 428 1 695 313 77 4 chr6 154115206 154115452 -35164102 - MLT1K LTR MaLR -196 392 129 1598 175 58 90 chr6 154115518 154115918 -35163636 + MLT1B LTR MaLR 2 388 -2 4108 90 45 4 chr6 154116031 154116563 -35162991 + MER41A LTR ERV1 1 554 0 380 78 338 13 chr6 154116563 154116640 -35162914 + MER41A-int LTR ERV1 1 102 -5844 2198 113 13 10 chr6 154116800 154117293 -35162261 - AluSx SINE Alu 0 312 1 422 169 77 85 chr6 154117294 154117424 -35162130 + MER105 DNA DNA 72 200 -4 1026 199 35 0 chr6 154117886 154118005 -35161549 + MER6B DNA MER2_type 2 132 -733 2288 93 7 20 chr6 154118005 154118306 -35161248 - AluSx SINE Alu -15 297 1 1026 199 35 0 chr6 154118306 154118387 -35161167 + MER6B DNA MER2_type 132 209 -1 230 331 54 8 chr6 154118500 154118630 -35160924 - L1M4 LINE L1 -1534 4612 4477 2105 125 6 10 chr6 154118928 154119240 -35160314 + AluSx SINE Alu 1 311 -1 238 316 65 39 chr6 154119654 154119809 -35159745 + LTR16C LTR ERVL 333 491 0 2133 99 57 0 chr6 154119825 154120107 -35159447 - AluSx SINE Alu -14 298 1 270 281 103 27 chr6 154120272 154120457 -35159097 - HAL1 LINE L1 -833 1674 1476 345 304 34 27 chr6 154120529 154120677 -35158877 - LTR16B LTR ERVL 0 464 316 360 0 0 0 chr6 154120872 154120912 -35158642 + (TG)n Simple_repeat Simple_repeat 2 41 0 21 57 0 0 chr6 154121008 154121043 -35158511 + AT_rich Low_complexity Low_complexity 1 35 0 450 177 21 21 chr6 154121101 154121197 -35158357 - L1MC5 LINE L1 -36 7925 7830 3779 175 61 4 chr6 154121644 154122380 -35157174 - L1MC3 LINE L1 0 7785 7008 3815 174 63 3 chr6 154122380 154123297 -35156257 + LTR28 LTR ERV1 1 1020 0 4153 161 61 44 chr6 154123297 154124178 -35155376 - L1MC3 LINE L1 -774 7011 6116 285 200 27 27 chr6 154124345 154124420 -35155134 + L1MEd LINE L1 600 674 -5445 23 54 0 0 chr6 154124529 154124566 -35154988 + AT_rich Low_complexity Low_complexity 1 37 0 204 229 0 21 chr6 154125265 154125313 -35154241 + GA-rich Low_complexity Low_complexity 2 48 0 1098 283 95 47 chr6 154125355 154125449 -35154105 + L1MEd LINE L1 2103 2191 -3938 2103 106 32 0 chr6 154125449 154125733 -35153821 + AluSx SINE Alu 6 298 -14 1098 283 95 47 chr6 154125733 154126177 -35153377 + L1MEd LINE L1 2191 2612 -3517 2284 107 0 0 chr6 154126177 154126475 -35153079 + AluSx SINE Alu 1 298 -14 1098 283 95 47 chr6 154126475 154126691 -35152863 + L1MEd LINE L1 2612 2816 -3313 189 0 0 0 chr6 154126691 154126712 -35152842 + (TA)n Simple_repeat Simple_repeat 1 21 0 2472 88 0 0 chr6 154126712 154127020 -35152534 - AluSq SINE Alu -5 308 1 1098 283 95 47 chr6 154127020 154127573 -35151981 + L1MEd LINE L1 2816 3482 -2647 1924 128 42 76 chr6 154127573 154127783 -35151771 + L1MA4A LINE L1 5930 6123 -180 2277 85 0 28 chr6 154127783 154128101 -35151453 - AluSc SINE Alu 0 309 1 1924 128 42 76 chr6 154128101 154128272 -35151282 + L1MA4A LINE L1 6123 6298 -5 1098 283 95 47 chr6 154128272 154128312 -35151242 + L1MEd LINE L1 3482 3519 -2610 2065 113 0 43 chr6 154128643 154128944 -35150610 - AluSx SINE Alu -24 288 1 1751 162 60 150 chr6 154129021 154129204 -35150350 + MLT1C LTR MaLR 1 199 -268 1569 212 10 0 chr6 154129204 154129497 -35150057 + AluJb SINE Alu 1 296 -16 1751 162 60 150 chr6 154129497 154129826 -35149728 + MLT1C LTR MaLR 199 467 0 2257 109 7 0 chr6 154130344 154130647 -35148907 + AluSx SINE Alu 1 305 -7 2224 147 101 32 chr6 154130708 154131145 -35148409 - MLT1C LTR MaLR 0 467 1 211 139 23 0 chr6 154131498 154131541 -35148013 + T-rich Low_complexity Low_complexity 2 45 0 1740 58 0 0 chr6 154131643 154131849 -35147705 - L1PA4 LINE L1 -8 6147 5942 1869 154 9 38 chr6 154131860 154132179 -35147375 + AluJb SINE Alu 2 311 -1 364 100 0 0 chr6 154132675 154132725 -35146829 - THE1C LTR MaLR -219 156 107 495 106 0 0 chr6 154132726 154132792 -35146762 + FLAM SINE Alu 64 129 -14 1305 77 12 0 chr6 154132793 154132963 -35146591 + THE1C LTR MaLR 204 375 0 260 83 42 42 chr6 154132975 154133023 -35146531 + L2 LINE L2 3223 3270 -2 2790 98 19 3 chr6 154133314 154133683 -35145871 + THE1C LTR MaLR 1 375 0 358 166 10 0 chr6 154134685 154134745 -35144809 - MER5B DNA MER1_type 0 178 125 2409 193 94 2 chr6 154135049 154135081 -35144473 - MLT2B1 LTR ERVL -11 509 481 216 97 0 0 chr6 154135081 154135112 -35144442 + (CA)n Simple_repeat Simple_repeat 2 32 0 2409 193 94 2 chr6 154135112 154135545 -35144009 - MLT2B1 LTR ERVL -39 481 1 1822 149 18 0 chr6 154135710 154135985 -35143569 - AluJb SINE Alu -31 281 2 263 253 219 34 chr6 154136090 154136268 -35143286 + MIR SINE MIR 24 234 -28 2203 124 3 3 chr6 154136696 154137002 -35142552 + AluSq SINE Alu 1 306 -7 369 0 0 0 chr6 154137046 154137087 -35142467 + (TG)n Simple_repeat Simple_repeat 2 42 0 610 298 30 122 chr6 154137789 154138084 -35141470 + L3 LINE CR1 1307 1574 -3 213 159 0 0 chr6 154139229 154139273 -35140281 + CT-rich Low_complexity Low_complexity 3 46 0 5308 143 31 5 chr6 154141497 154141961 -35137593 + L1PB4 LINE L1 5010 5461 -695 1951 171 0 3 chr6 154141961 154142271 -35137283 + AluSx SINE Alu 1 309 -3 5308 143 31 5 chr6 154142271 154142919 -35136635 + L1PB4 LINE L1 5461 6155 -1 2209 107 7 3 chr6 154143008 154143306 -35136248 + AluSc SINE Alu 1 299 -10 3511 124 12 4 chr6 154143421 154143914 -35135640 + LOR1a LTR ERV1 1 497 0 211 289 0 0 chr6 154144562 154144614 -35134940 + L2 LINE L2 3253 3304 -9 22757 42 4 1 chr6 154144840 154148280 -35131274 - L1PA5 LINE L1 0 6154 2706 403 230 351 0 chr6 154149122 154149313 -35130241 - MIR SINE MIR 0 262 5 224 0 65 0 chr6 154149437 154149468 -35130086 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 618 265 15 8 chr6 154149972 154150104 -35129450 - MER63A DNA MER1_type -25 185 53 900 252 91 42 chr6 154150150 154150286 -35129268 - MLT1H LTR MaLR -27 522 394 992 156 161 0 chr6 154150286 154150472 -35129082 - MER20 DNA MER1_type -1 218 3 900 252 91 42 chr6 154150472 154150541 -35129013 - MLT1H LTR MaLR -155 394 330 2067 160 131 19 chr6 154150541 154150960 -35128594 - MER31B LTR ERV1 0 466 1 900 252 91 42 chr6 154150960 154151190 -35128364 - MLT1H LTR MaLR -219 330 15 2234 114 0 19 chr6 154151624 154151941 -35127613 - AluSx SINE Alu -1 311 1 574 203 130 0 chr6 154152052 154152190 -35127364 + MER103 DNA DNA 9 164 -2 2246 107 0 0 chr6 154152692 154152990 -35126564 - AluSg SINE Alu -12 298 1 1428 233 202 34 chr6 154152990 154153484 -35126070 + MLT1E LTR MaLR 16 592 -1 437 216 92 72 chr6 154153918 154154071 -35125483 - L2 LINE L2 -2 3311 3156 2373 83 0 29 chr6 154154079 154154391 -35125163 + AluSg SINE Alu 1 303 -7 210 158 0 0 chr6 154156017 154156055 -35123499 + A-rich Low_complexity Low_complexity 1 38 0 317 326 51 51 chr6 154156446 154156584 -35122970 - L2 LINE L2 -2 3270 3133 3151 137 105 45 chr6 154156870 154157468 -35122086 + MER51A LTR ERV1 1 634 0 267 329 84 42 chr6 154157629 154157866 -35121688 - L2 LINE L2 -75 3197 2951 2218 68 58 17 chr6 154158173 154158468 -35121086 - AluSc SINE Alu -2 307 1 328 332 139 27 chr6 154158711 154159012 -35120542 - L1M2 LINE L1 -5900 949 615 319 297 134 38 chr6 154159221 154159511 -35120043 - L1M2 LINE L1 -5864 985 668 267 103 0 0 chr6 154160049 154160088 -35119466 + (A)n Simple_repeat Simple_repeat 1 39 0 2326 82 3 3 chr6 154160411 154160715 -35118839 - AluSg SINE Alu -6 304 1 324 240 81 59 chr6 154160978 154161140 -35118414 + MIR SINE MIR 9 182 -68 356 272 97 18 chr6 154161253 154161367 -35118187 - L2 LINE L2 -1 3271 3149 204 158 0 0 chr6 154161898 154161936 -35117618 + T-rich Low_complexity Low_complexity 3 40 0 532 237 30 127 chr6 154163008 154163244 -35116310 + MIR SINE MIR 47 259 -3 937 242 31 57 chr6 154163254 154163572 -35115982 - LTR16A LTR ERVL -18 432 123 2391 75 0 0 chr6 154164578 154164871 -35114683 - AluY SINE Alu -18 293 1 290 260 78 42 chr6 154164985 154165177 -35114377 - L1ME4a LINE L1 -88 6033 5835 965 192 155 37 chr6 154165287 154165532 -35114022 - MLT1A1 LTR MaLR 0 365 92 1276 112 0 0 chr6 154165532 154165701 -35113853 - AluSc SINE Alu -9 300 132 2480 85 0 0 chr6 154165701 154166007 -35113547 - AluY SINE Alu -5 306 1 645 165 19 0 chr6 154166007 154166110 -35113444 - MLT1A1 LTR MaLR -260 105 1 387 253 93 33 chr6 154166114 154166264 -35113290 - L1ME4a LINE L1 -466 5655 5497 2245 82 3 10 chr6 154166446 154166738 -35112816 + AluSg SINE Alu 1 290 -20 341 252 145 41 chr6 154166877 154167073 -35112481 + MIR SINE MIR 31 247 -15 2435 97 0 0 chr6 154167363 154167671 -35111883 + AluSc SINE Alu 2 309 0 396 296 202 34 chr6 154167976 154168273 -35111281 - L2 LINE L2 0 3272 2926 332 198 47 23 chr6 154169349 154169435 -35110119 - MER34 LTR ERV1 -6 536 449 1806 128 60 4 chr6 154171125 154171406 -35108148 + AluJb SINE Alu 1 297 -15 568 282 180 14 chr6 154171617 154171961 -35107593 - L1MC/D LINE L1 -2152 5656 5256 2059 132 0 7 chr6 154172264 154172560 -35106994 + AluSx SINE Alu 2 295 -17 34 0 0 0 chr6 154174299 154174333 -35105221 + AT_rich Low_complexity Low_complexity 1 34 0 336 23 0 23 chr6 154175475 154175519 -35104035 + MADE1 DNA Mariner 1 43 -37 234 172 17 69 chr6 154175711 154175769 -35103785 + MIR SINE MIR 69 123 -139 243 0 0 0 chr6 154176200 154176227 -35103327 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr6 154176627 154176655 -35102899 + AT_rich Low_complexity Low_complexity 1 28 0 787 214 203 32 chr6 154176991 154177206 -35102348 - Charlie2 DNA MER1_type -9 2853 2676 2262 85 14 3 chr6 154177206 154177500 -35102054 - AluSx SINE Alu -15 297 1 787 214 203 32 chr6 154177500 154177663 -35101891 - Charlie2 DNA MER1_type -186 2676 2410 1249 187 22 4 chr6 154177678 154177903 -35101651 + L1M4 LINE L1 15 243 -6299 1117 142 17 11 chr6 154177909 154178085 -35101469 + MER2 DNA MER2_type 169 345 0 247 228 0 18 chr6 154178780 154178788 -35100766 + (CATATA)n Simple_repeat Simple_repeat 3 10 -48 3249 144 88 5 chr6 154178788 154179344 -35100210 - MER7C DNA MER2_type 0 602 1 247 228 0 18 chr6 154179344 154179392 -35100162 + (CATATA)n Simple_repeat Simple_repeat 10 58 0 21 0 0 0 chr6 154179636 154179657 -35099897 + AT_rich Low_complexity Low_complexity 1 21 0 42 65 0 0 chr6 154179780 154179857 -35099697 + AT_rich Low_complexity Low_complexity 1 77 0 1741 169 7 26 chr6 154179983 154180291 -35099263 - AluJb SINE Alu -10 302 1 4385 81 20 6 chr6 154180674 154181220 -35098334 - MER41A LTR ERV1 0 554 1 1752 146 6 62 chr6 154181856 154182002 -35097552 + AluJb SINE Alu 1 121 -191 2419 71 0 3 chr6 154182002 154182299 -35097255 + AluY SINE Alu 1 296 -15 1752 146 6 62 chr6 154182299 154182475 -35097079 + AluJb SINE Alu 121 305 -7 672 178 61 140 chr6 154182483 154182573 -35096981 - MIR SINE MIR -30 232 136 2293 94 3 19 chr6 154182573 154182880 -35096674 + AluSp SINE Alu 1 302 -11 672 178 61 140 chr6 154182880 154183003 -35096551 - MIR SINE MIR -126 136 36 1301 191 4 4 chr6 154184264 154184495 -35095059 - AluJb SINE Alu -81 231 1 256 234 257 9 chr6 154184679 154184812 -35094742 - MIR SINE MIR -62 146 10 233 241 74 0 chr6 154185313 154185367 -35094187 + L2 LINE L2 3210 3267 -5 785 281 18 18 chr6 154186094 154186322 -35093232 - MIR SINE MIR -24 238 11 517 189 205 43 chr6 154186904 154187089 -35092465 + MER20 DNA MER1_type 1 215 -4 2139 128 3 0 chr6 154187131 154187429 -35092125 - AluSx SINE Alu -7 305 7 264 30 0 0 chr6 154187830 154187863 -35091691 + (CA)n Simple_repeat Simple_repeat 1 33 0 180 0 0 0 chr6 154187862 154187882 -35091672 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 605 283 31 0 chr6 154188811 154189002 -35090552 - MIR SINE MIR -9 253 57 1847 153 87 19 chr6 154189037 154189404 -35090150 - L1MC1 LINE L1 -5 6328 5937 273 135 0 0 chr6 154190005 154190042 -35089512 + Tigger4(Zombi) DNA MER2_type 1 37 -2694 1863 270 99 73 chr6 154191804 154193254 -35086300 - HAL1 LINE L1 -42 2465 979 958 253 28 51 chr6 154193334 154193692 -35085862 - MLT1H LTR MaLR -15 575 72 1476 176 15 70 chr6 154195397 154195591 -35083963 - AluJo SINE Alu 0 312 109 185 0 0 39 chr6 154195591 154195617 -35083937 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2195 95 7 3 chr6 154195618 154195912 -35083642 - AluSq SINE Alu -18 295 1 1476 176 15 70 chr6 154195912 154196045 -35083509 - AluJo SINE Alu -202 110 1 395 341 48 12 chr6 154196495 154196706 -35082848 + MIR SINE MIR 36 252 -10 401 308 37 0 chr6 154197048 154197155 -35082399 - L2 LINE L2 0 3272 3162 227 318 40 20 chr6 154198458 154198609 -35080945 + L1MC4a LINE L1 5786 5939 -1869 286 251 156 42 chr6 154199378 154199545 -35080009 - MIR3 SINE MIR -15 193 8 382 320 61 3 chr6 154199932 154200111 -35079443 + MIR SINE MIR 26 210 -52 2221 106 0 10 chr6 154202354 154202655 -35076899 - AluSc SINE Alu -11 298 1 28 0 0 0 chr6 154203689 154203717 -35075837 + AT_rich Low_complexity Low_complexity 1 28 0 604 146 10 10 chr6 154204895 154204998 -35074556 + MER95 LTR ERV 29 131 -300 2034 178 104 7 chr6 154205042 154205457 -35074097 + MER44D DNA MER2_type 1 510 -95 1071 181 65 4 chr6 154205499 154205731 -35073823 + MER95 LTR ERV 186 431 0 292 284 137 0 chr6 154206927 154207029 -35072525 - MIR SINE MIR -63 145 30 3058 135 69 6 chr6 154207429 154207909 -35071645 - LTR64 LTR ERVK 0 513 4 2429 70 0 0 chr6 154209201 154209500 -35070054 + AluY SINE Alu 1 299 -12 564 201 161 40 chr6 154209804 154210127 -35069427 + L1ME1 LINE L1 4815 5280 -866 3087 203 98 35 chr6 154210133 154210925 -35068629 + L1ME1 LINE L1 5325 6166 0 24 0 0 0 chr6 154211298 154211322 -35068232 + AT_rich Low_complexity Low_complexity 1 24 0 215 252 202 0 chr6 154211617 154211736 -35067818 + MIR SINE MIR 118 260 -2 202 250 114 11 chr6 154211779 154211867 -35067687 - MIR3 SINE MIR -43 165 69 2295 112 0 6 chr6 154212526 154212838 -35066716 - AluSx SINE Alu -2 310 1 204 293 245 9 chr6 154213658 154213764 -35065790 + L2 LINE L2 3139 3269 -3 1318 201 24 44 chr6 154213936 154214079 -35065475 - MLT1A1 LTR MaLR -2 363 219 2367 106 0 3 chr6 154214079 154214390 -35065164 - AluSg SINE Alu 0 310 1 1318 201 24 44 chr6 154214390 154214544 -35065010 - MLT1A1 LTR MaLR -146 219 72 481 144 0 44 chr6 154214589 154214679 -35064875 - MLT1A1 LTR MaLR -279 86 1 795 210 27 73 chr6 154214831 154214919 -35064635 - MER3 DNA MER1_type 0 209 119 2334 89 7 3 chr6 154214919 154215223 -35064331 + AluSp SINE Alu 1 305 -8 795 210 27 73 chr6 154215223 154215353 -35064201 - MER3 DNA MER1_type -90 119 1 663 231 141 59 chr6 154216087 154216377 -35063177 + L2 LINE L2 3000 3313 0 2160 100 0 59 chr6 154216444 154216764 -35062790 + AluY SINE Alu 1 301 -10 1224 255 98 11 chr6 154216782 154217151 -35062403 + L2 LINE L2 1879 2279 -1035 327 183 146 0 chr6 154217163 154217245 -35062309 - MLT1I LTR MaLR -38 371 278 2152 88 0 79 chr6 154217440 154217622 -35061932 - AluSc SINE Alu -17 292 144 2487 8 0 0 chr6 154217622 154217888 -35061666 - AluY SINE Alu -11 300 35 2152 88 0 79 chr6 154217888 154218022 -35061532 - AluSc SINE Alu -165 144 1 304 199 45 11 chr6 154218024 154218116 -35061438 - MLT1H LTR MaLR -272 170 40 1503 314 131 11 chr6 154218145 154218689 -35060865 + L2 LINE L2 2314 2922 -392 1331 216 6 26 chr6 154218695 154219006 -35060548 - MLT1D LTR MaLR 0 505 216 2418 91 3 3 chr6 154220147 154220456 -35059098 - AluSq SINE Alu -4 309 1 822 142 21 93 chr6 154220663 154220864 -35058690 - MLT1E2 LTR MaLR -323 182 1 927 301 65 24 chr6 154220867 154221239 -35058315 + L2 LINE L2 2926 3312 -1 1058 198 130 58 chr6 154221444 154221843 -35057711 - MSTC LTR MaLR 0 428 1 451 246 187 10 chr6 154222106 154222298 -35057256 + MLT1J LTR MaLR 214 441 -70 996 230 157 38 chr6 154222298 154222745 -35056809 + LTR33 LTR ERVL 1 500 -21 21 0 0 0 chr6 154223000 154223021 -35056533 + AT_rich Low_complexity Low_complexity 1 21 0 293 334 43 84 chr6 154223160 154223600 -35055954 - L2 LINE L2 -14 3258 2837 971 275 79 20 chr6 154223698 154224102 -35055452 + LTR16B LTR ERVL 12 439 -25 362 288 32 8 chr6 154224104 154224229 -35055325 + L3 LINE CR1 1084 1211 -366 185 341 159 42 chr6 154224536 154224970 -35054584 + L2 LINE L2 1015 1499 -1815 1754 154 170 28 chr6 154224995 154225430 -35054124 + LTR54B LTR ERV1 1 497 -1 22 0 0 0 chr6 154226131 154226153 -35053401 + AT_rich Low_complexity Low_complexity 1 22 0 4103 117 20 32 chr6 154226355 154227011 -35052543 - L1MA5 LINE L1 -10 6290 5643 914 277 92 17 chr6 154227014 154227371 -35052183 + L2 LINE L2 1688 2071 -1243 2195 96 0 23 chr6 154227834 154228135 -35051419 - AluSg SINE Alu -16 294 1 3790 208 26 10 chr6 154228188 154228987 -35050567 + L1P5 LINE L1 368 1179 -5684 1442 119 5 0 chr6 154228993 154229186 -35050368 - AluSx SINE Alu -98 214 21 12824 195 50 21 chr6 154229187 154230170 -35049384 + L1P5 LINE L1 1848 2802 -4065 2213 94 0 20 chr6 154230170 154230467 -35049087 + AluY SINE Alu 5 295 -16 12824 195 50 21 chr6 154230467 154231573 -35047981 + L1P5 LINE L1 2802 3875 -2992 2064 148 3 0 chr6 154231573 154231883 -35047671 + AluSx SINE Alu 1 311 -1 12824 195 50 21 chr6 154231883 154234278 -35045276 + L1P5 LINE L1 3875 6497 -370 2441 51 0 0 chr6 154234276 154234571 -35044983 + L1P LINE L1 3 297 -5849 * 2186 126 0 0 chr6 154234788 154235089 -35044465 - AluSq SINE Alu -12 301 1 514 202 50 25 chr6 154235219 154235338 -35044216 - MER97c DNA MER1_type? -911 179 58 273 289 0 0 chr6 154236541 154236624 -35042930 + (CA)n Simple_repeat Simple_repeat 2 84 0 269 240 67 0 chr6 154236909 154236984 -35042570 + L2 LINE L2 3189 3268 -4 528 292 13 13 chr6 154237185 154237339 -35042215 - MIR3 SINE MIR -41 167 14 2160 119 50 61 chr6 154237510 154237889 -35041665 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr6 154238767 154238796 -35040758 + AT_rich Low_complexity Low_complexity 1 29 0 393 160 0 0 chr6 154238810 154238916 -35040638 + (TA)n Simple_repeat Simple_repeat 1 106 0 496 176 35 0 chr6 154238916 154239001 -35040553 - AluJb SINE Alu -22 290 203 1262 136 16 45 chr6 154239003 154239245 -35040309 + THE1C LTR MaLR 141 375 0 8602 123 40 21 chr6 154239245 154240579 -35038975 + THE1C-int LTR MaLR 1 1359 -221 1045 108 48 12 chr6 154240579 154240746 -35038808 + LTR1 LTR ERV1 63 235 -550 1604 71 33 5 chr6 154240748 154240959 -35038595 + THE1C-int LTR MaLR 1364 1580 0 2026 129 29 40 chr6 154240959 154241097 -35038457 + THE1C LTR MaLR 1 139 -236 4188 160 21 70 chr6 154241097 154241923 -35037631 + LTR1 LTR ERV1 1 785 0 2026 129 29 40 chr6 154241923 154242163 -35037391 + THE1C LTR MaLR 139 375 0 1227 149 9 42 chr6 154242163 154242378 -35037176 - AluJb SINE Alu -104 208 1 2066 113 6 38 chr6 154242686 154243004 -35036550 + AluSc SINE Alu 1 308 -1 2240 117 0 0 chr6 154243580 154243880 -35035674 + AluSx SINE Alu 3 302 -10 2007 143 3 17 chr6 154244963 154245263 -35034291 - AluJb SINE Alu -16 296 1 186 143 0 0 chr6 154245296 154245331 -35034223 + (TC)n Simple_repeat Simple_repeat 2 36 0 194 265 15 0 chr6 154246425 154246493 -35033061 + CT-rich Low_complexity Low_complexity 4 72 0 301 246 17 0 chr6 154247440 154247558 -35031996 + (TA)n Simple_repeat Simple_repeat 1 120 0 183 311 118 42 chr6 154249493 154249612 -35029942 + L2 LINE L2 3144 3271 -1 294 250 161 45 chr6 154249696 154249808 -35029746 - L2 LINE L2 -10 3262 3138 454 267 9 0 chr6 154250660 154250765 -35028789 - MIR SINE MIR -57 205 100 2040 110 37 3 chr6 154251166 154251466 -35028088 - AluSq SINE Alu -3 310 1 25 0 0 0 chr6 154251831 154251856 -35027698 + AT_rich Low_complexity Low_complexity 1 25 0 989 163 0 0 chr6 154252249 154252402 -35027152 - AluSg1 SINE Alu -154 155 3 222 37 0 0 chr6 154252494 154252521 -35027033 + (T)n Simple_repeat Simple_repeat 1 27 0 502 118 0 0 chr6 154253059 154253127 -35026427 + AluSq SINE Alu 3 70 -243 1017 63 0 8 chr6 154253127 154253253 -35026301 + AluY SINE Alu 173 297 -14 1838 88 0 8 chr6 154253253 154253493 -35026061 + AluSq SINE Alu 76 313 0 323 220 127 59 chr6 154253827 154253945 -35025609 + MER91B DNA MER1_type 2 127 -63 452 263 10 0 chr6 154253963 154254062 -35025492 + MER91B DNA MER1_type 88 187 -3 1717 184 0 16 chr6 154255178 154255487 -35024067 + AluJo SINE Alu 1 304 -8 246 329 24 0 chr6 154255585 154255667 -35023887 - L3 LINE CR1 -48 1529 1446 2219 117 7 0 chr6 154255702 154256011 -35023543 - AluSq SINE Alu -2 311 1 289 200 0 71 chr6 154256090 154256160 -35023394 + MER21B LTR ERV1 12 76 -787 216 376 28 18 chr6 154256187 154256296 -35023258 - MER5A DNA MER1_type -73 116 7 23 0 0 0 chr6 154256513 154256536 -35023018 + AT_rich Low_complexity Low_complexity 1 23 0 333 314 25 16 chr6 154258183 154258304 -35021250 + MIR SINE MIR 21 142 -120 1188 299 86 19 chr6 154258352 154259195 -35020359 + L2 LINE L2 2418 3313 0 2019 108 18 7 chr6 154259326 154259628 -35019926 + AluSx SINE Alu 3 307 0 32 0 0 0 chr6 154260942 154260974 -35018580 + AT_rich Low_complexity Low_complexity 1 32 0 525 243 16 49 chr6 154261041 154261226 -35018328 + MIR SINE MIR 84 262 0 2399 76 0 13 chr6 154261285 154261589 -35017965 - AluSg SINE Alu -10 300 1 21 36 0 0 chr6 154263264 154263292 -35016262 + AT_rich Low_complexity Low_complexity 1 28 0 2071 113 0 3 chr6 154263928 154264245 -35015309 - AluSx SINE Alu 0 316 1 288 282 0 51 chr6 154264443 154264521 -35015033 + L2 LINE L2 3195 3268 -4 257 228 18 18 chr6 154264550 154264607 -35014947 + L3 LINE CR1 1515 1571 -6 312 70 0 0 chr6 154264807 154264850 -35014704 + (TG)n Simple_repeat Simple_repeat 2 44 0 3097 274 52 40 chr6 154265003 154266701 -35012853 + L1ME LINE L1 21 1736 -4344 1302 226 102 11 chr6 154266847 154266979 -35012575 + L1ME LINE L1 2178 2297 -3783 2417 89 0 0 chr6 154266979 154267281 -35012273 + AluSg1 SINE Alu 1 302 -7 1302 226 102 11 chr6 154267281 154267673 -35011881 + L1ME LINE L1 2297 2868 -3212 471 311 66 11 chr6 154267686 154267869 -35011685 + MIR SINE MIR 53 245 -17 1583 177 20 27 chr6 154268019 154268313 -35011241 - AluJo SINE Alu -20 292 1 613 284 69 18 chr6 154269274 154269492 -35010062 - MIR SINE MIR -14 248 20 760 156 89 45 chr6 154270589 154270768 -35008786 - MER53 DNA DNA 0 189 3 2208 129 0 0 chr6 154271135 154271445 -35008109 + AluSg SINE Alu 1 310 0 2360 112 0 0 chr6 154271860 154272173 -35007381 + AluSq SINE Alu 1 313 0 920 213 33 19 chr6 154272241 154272452 -35007102 - MER20 DNA MER1_type 0 219 6 1780 149 26 26 chr6 154272557 154272866 -35006688 - AluJo SINE Alu -3 309 1 29 0 0 0 chr6 154272911 154272940 -35006614 + AT_rich Low_complexity Low_complexity 1 29 0 356 336 66 31 chr6 154274097 154274353 -35005201 + L1ME LINE L1 5484 5748 -373 652 182 86 7 chr6 154274878 154275031 -35004523 - MER69A DNA AcHobo -7 170 6 295 337 119 31 chr6 154276102 154276306 -35003248 + MIR SINE MIR 38 258 -4 454 141 0 24 chr6 154277114 154277199 -35002355 + MER53 DNA DNA 95 177 -12 * 579 151 0 0 chr6 154277126 154277219 -35002335 - MER53 DNA DNA -94 95 3 350 345 88 7 chr6 154277223 154277371 -35002183 - MIR3 SINE MIR -4 204 45 260 281 47 0 chr6 154277771 154277835 -35001719 + L2 LINE L2 3188 3254 -18 1818 107 4 8 chr6 154277862 154278114 -35001440 + AluSc SINE Alu 1 251 -58 41982 34 3 0 chr6 154278246 154283974 -34995580 + L1PA4 LINE L1 411 6150 -5 2850 82 8 8 chr6 154283982 154284362 -34995192 + L1PB2 LINE L1 5769 6148 -3 2137 114 13 3 chr6 154284927 154285234 -34994320 + AluY SINE Alu 1 310 -1 2153 114 7 3 chr6 154285811 154286101 -34993453 + AluSx SINE Alu 1 291 -21 373 296 9 9 chr6 154287269 154287377 -34992177 + MIR SINE MIR 37 144 -64 399 258 10 10 chr6 154287663 154287760 -34991794 - L2 LINE L2 -4 3309 3213 2392 70 0 3 chr6 154287862 154288160 -34991394 - AluY SINE Alu -14 297 1 1937 119 77 0 chr6 154289681 154289967 -34989587 + AluSc SINE Alu 1 308 -1 1509 104 30 13 chr6 154290111 154290342 -34989212 + AluSx SINE Alu 60 294 -18 481 265 16 81 chr6 154290667 154290729 -34988825 + MIR3 SINE MIR 27 91 -117 222 62 0 0 chr6 154290729 154290761 -34988793 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 481 265 16 81 chr6 154290761 154290883 -34988671 + MIR3 SINE MIR 91 199 -9 2840 13 0 0 chr6 154291224 154291535 -34988019 - AluY SINE Alu 0 311 1 2170 148 28 6 chr6 154291986 154292338 -34987216 + MLT1A1 LTR MaLR 1 360 -5 226 333 36 0 chr6 154292943 154293054 -34986500 + L1ME LINE L1 138 252 -5953 412 286 42 29 chr6 154293578 154293816 -34985738 + L1ME LINE L1 872 1112 -5093 4905 247 86 62 chr6 154293845 154294521 -34985033 + L1ME LINE L1 1972 2630 -3585 2149 121 3 13 chr6 154294521 154294836 -34984718 + AluSx SINE Alu 1 312 0 4905 247 86 62 chr6 154294836 154295500 -34984054 + L1ME LINE L1 2630 3276 -2939 7780 20 0 1 chr6 154295500 154296457 -34983097 + L1PA3 LINE L1 5200 6155 0 4905 247 86 62 chr6 154296457 154298013 -34981541 + L1ME LINE L1 3276 4911 -1304 1907 145 3 16 chr6 154298013 154298324 -34981230 + AluJb SINE Alu 1 307 -5 1258 245 89 56 chr6 154298425 154298743 -34980811 + L1ME LINE L1 5190 5496 -743 1718 169 7 0 chr6 154298743 154299046 -34980508 + AluJb SINE Alu 1 305 0 1258 245 89 56 chr6 154299046 154299059 -34980495 + L1ME LINE L1 5496 5507 -732 2123 128 10 0 chr6 154299059 154299364 -34980190 + AluSg SINE Alu 3 310 0 1258 245 89 56 chr6 154299364 154299728 -34979826 + L1ME LINE L1 5507 5912 -327 216 282 0 0 chr6 154300028 154300099 -34979455 + C-rich Low_complexity Low_complexity 1 71 0 288 187 80 53 chr6 154350331 154350406 -34929148 + MIR3 SINE MIR 87 163 -45 428 240 88 32 chr6 154351091 154351216 -34928338 + MIR3 SINE MIR 66 197 -11 583 249 15 41 chr6 154351872 154352069 -34927485 - L2 LINE L2 -10 3303 3112 2303 85 3 47 chr6 154352510 154352829 -34926725 - AluSg SINE Alu -5 305 1 248 301 43 58 chr6 154353760 154353958 -34925596 + MIR SINE MIR 3 197 -60 2015 97 4 11 chr6 154356936 154357205 -34922349 - AluSq SINE Alu -8 305 39 226 343 89 0 chr6 154357304 154357450 -34922104 - MIR SINE MIR -11 251 93 1983 147 13 7 chr6 154357458 154357628 -34921926 - AluJb SINE Alu -10 302 128 180 0 0 0 chr6 154357628 154357648 -34921906 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1983 147 13 7 chr6 154357648 154357777 -34921777 - AluJb SINE Alu -184 128 1 1023 135 0 0 chr6 154359098 154359246 -34920308 + AluJb SINE Alu 165 312 0 2049 147 27 59 chr6 154360267 154360641 -34918913 + MLT1A1 LTR MaLR 1 362 -3 2210 110 3 3 chr6 154361679 154361988 -34917566 - AluSc SINE Alu 0 309 1 21 0 0 0 chr6 154361991 154362012 -34917542 + AT_rich Low_complexity Low_complexity 1 21 0 242 315 77 15 chr6 154362372 154362502 -34917052 + MIR3 SINE MIR 64 201 -7 682 291 20 41 chr6 154363977 154364221 -34915333 + MIR SINE MIR 22 260 -2 25 31 0 0 chr6 154364435 154364467 -34915087 + AT_rich Low_complexity Low_complexity 1 32 0 21 26 0 26 chr6 154364727 154364748 -34914806 + AT_rich Low_complexity Low_complexity 1 22 -16 878 107 23 30 chr6 154364748 154364879 -34914675 - FLAM_C SINE Alu -3 130 1 21 26 0 26 chr6 154364879 154364896 -34914658 + AT_rich Low_complexity Low_complexity 22 38 0 216 111 0 0 chr6 154365674 154365710 -34913844 + (ATG)n Simple_repeat Simple_repeat 1 36 0 1269 305 67 42 chr6 154366488 154366900 -34912654 + MLT2F LTR ERVL 5 440 -223 2396 97 0 0 chr6 154366900 154367208 -34912346 - AluSx SINE Alu -4 308 1 1269 305 67 42 chr6 154367208 154367438 -34912116 + MLT2F LTR ERVL 440 663 0 180 219 0 0 chr6 154368976 154369008 -34910546 - L2 LINE L2 -31 3241 3210 * 667 186 13 58 chr6 154368982 154369061 -34910493 - MIR SINE MIR -31 231 161 664 204 41 17 chr6 154369061 154369233 -34910321 + MER104 DNA MER2_type 1 176 -4 667 186 13 58 chr6 154369233 154369309 -34910245 - MIR SINE MIR -101 161 83 357 253 6 3 chr6 154369711 154369810 -34909744 - MER63 DNA MER1_type -321 741 44 2552 57 3 0 chr6 154370076 154370375 -34909179 - AluY SINE Alu -11 300 1 2395 65 0 7 chr6 154370474 154370768 -34908786 + AluSc SINE Alu 1 292 -17 2434 83 3 0 chr6 154373028 154373330 -34906224 + AluSp SINE Alu 2 304 -9 325 239 55 55 chr6 154374570 154374679 -34904875 - MIR3 SINE MIR -5 203 95 1877 104 0 0 chr6 154374690 154374940 -34904614 - AluSg SINE Alu 0 310 61 607 282 147 38 chr6 154375749 154376253 -34903301 + L2 LINE L2 1750 2308 -1006 183 204 0 0 chr6 154376274 154376318 -34903236 + (TTA)n Simple_repeat Simple_repeat 1 44 0 222 322 11 11 chr6 154376331 154376418 -34903136 + L2 LINE L2 2935 3021 -251 321 296 175 0 chr6 154376497 154376686 -34902868 - MIR SINE MIR -1 261 40 405 280 177 6 chr6 154376702 154376877 -34902677 - MIR SINE MIR 0 262 58 273 267 224 46 chr6 154377634 154377937 -34901617 - L1MC4a LINE L1 -1836 5972 5616 295 276 58 40 chr6 154378308 154378533 -34901021 - HAL1 LINE L1 -856 1651 1423 35 0 0 0 chr6 154378716 154378751 -34900803 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr6 154379177 154379202 -34900352 + AT_rich Low_complexity Low_complexity 1 25 0 477 309 85 27 chr6 154379294 154379517 -34900037 - MIR SINE MIR -8 254 19 2185 117 7 0 chr6 154379547 154379847 -34899707 + AluSx SINE Alu 1 302 -10 2353 93 3 0 chr6 154381697 154381997 -34897557 - AluSx SINE Alu -11 301 1 22 35 0 0 chr6 154382330 154382359 -34897195 + AT_rich Low_complexity Low_complexity 1 29 0 2403 80 0 3 chr6 154382630 154382930 -34896624 + AluSq SINE Alu 1 299 -14 321 218 103 11 chr6 154382983 154383070 -34896484 - L1ME4a LINE L1 -81 6040 5946 245 258 135 92 chr6 154383159 154383701 -34895853 - L1M4 LINE L1 -1502 4644 4080 746 256 54 50 chr6 154384180 154384248 -34895306 - MIR SINE MIR 0 262 196 2513 65 0 0 chr6 154384248 154384542 -34895012 - AluY SINE Alu -17 294 1 746 256 54 50 chr6 154384542 154384715 -34894839 - MIR SINE MIR -66 196 20 228 35 0 0 chr6 154385031 154385060 -34894494 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 2391 73 0 0 chr6 154385062 154385351 -34894203 - AluY SINE Alu -22 289 1 349 373 24 8 chr6 154386925 154387051 -34892503 - L2 LINE L2 -5 3267 3140 2240 101 0 13 chr6 154387110 154387417 -34892137 - AluSc SINE Alu -6 303 1 681 299 24 19 chr6 154387499 154387710 -34891844 - MIR SINE MIR -49 213 2 2004 131 10 3 chr6 154388146 154388444 -34891110 - AluJb SINE Alu -12 300 1 492 315 61 0 chr6 154389229 154389442 -34890112 + L2 LINE L2 3078 3303 -10 2002 103 7 17 chr6 154389442 154389732 -34889822 + AluSx SINE Alu 1 287 -25 288 0 0 0 chr6 154389735 154389767 -34889787 + (TAA)n Simple_repeat Simple_repeat 3 34 0 334 192 115 99 chr6 154390607 154390789 -34888765 - L1MC5 LINE L1 -36 7925 7741 238 97 0 0 chr6 154391768 154391799 -34887755 - U2 snRNA snRNA -157 31 1 2185 86 0 21 chr6 154391872 154392212 -34887342 - AluSx SINE Alu 0 334 1 299 253 38 0 chr6 154392389 154392468 -34887086 - Tigger5 DNA MER2_type 0 2323 2242 263 288 0 0 chr6 154392434 154392500 -34887054 + Tigger5 DNA MER2_type 2252 2317 -6 * 479 192 0 0 chr6 154392503 154392581 -34886973 - Tigger5 DNA MER2_type -2245 78 1 2262 91 19 3 chr6 154392584 154392891 -34886663 - AluSx SINE Alu 0 312 1 1257 101 0 0 chr6 154392901 154393069 -34886485 + AluSc SINE Alu 142 309 0 271 200 109 0 chr6 154393076 154393131 -34886423 - MER5A DNA MER1_type -117 72 12 187 286 224 20 chr6 154393251 154393349 -34886205 + L2 LINE L2 2935 3052 -220 230 300 11 44 chr6 154393393 154393483 -34886071 + L2 LINE L2 3186 3272 0 2220 98 3 0 chr6 154393942 154394228 -34885326 + AluSp SINE Alu 1 287 -26 279 0 0 0 chr6 154394228 154394259 -34885295 + (CA)n Simple_repeat Simple_repeat 2 32 0 1837 141 13 45 chr6 154395474 154395787 -34883767 - AluSx SINE Alu -9 303 1 1220 150 109 105 chr6 154396085 154396301 -34883253 - AluJo SINE Alu -17 295 81 814 121 9 0 chr6 154396301 154396417 -34883137 + L1PB1 LINE L1 6033 6149 -2 1220 150 109 105 chr6 154396417 154396434 -34883120 - AluJo SINE Alu -231 81 66 2378 88 0 3 chr6 154396434 154396741 -34882813 + AluSq SINE Alu 2 307 -6 1220 150 109 105 chr6 154396741 154396800 -34882754 - AluJo SINE Alu -246 66 1 268 242 97 0 chr6 154396800 154396862 -34882692 - MER5A DNA MER1_type -113 76 9 734 132 124 0 chr6 154399176 154399297 -34880257 + MLT1D LTR MaLR 366 501 -4 1142 191 24 16 chr6 154399297 154399411 -34880143 + ORSL DNA AcHobo 28 140 -135 2135 112 0 3 chr6 154399411 154399705 -34879849 + AluSg1 SINE Alu 1 293 -16 1142 191 24 16 chr6 154399705 154399836 -34879718 + ORSL DNA AcHobo 140 275 0 198 71 0 0 chr6 154400210 154400238 -34879316 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 610 105 0 0 chr6 154400242 154400318 -34879236 - AluSg/x SINE Alu -35 275 200 1390 155 21 21 chr6 154400319 154400558 -34878996 - AluJo SINE Alu -73 239 1 2346 78 3 3 chr6 154400592 154400886 -34878668 + AluY SINE Alu 1 294 -17 26 0 0 0 chr6 154401017 154401043 -34878511 + AT_rich Low_complexity Low_complexity 1 26 0 303 150 0 0 chr6 154403460 154403520 -34876034 + (T)n Simple_repeat Simple_repeat 1 60 0 266 0 29 0 chr6 154403910 154403944 -34875610 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1001 149 52 104 chr6 154405289 154405578 -34873976 + ORSL DNA AcHobo 1 274 -1 382 323 29 86 chr6 154406264 154406543 -34873011 - L2 LINE L2 -91 3181 2919 200 247 247 21 chr6 154406692 154406882 -34872672 - L2 LINE L2 -639 2675 2443 3088 207 9 64 chr6 154406941 154407296 -34872258 + MER82 DNA MER2_type 1 374 -279 183 42 0 0 chr6 154407296 154407320 -34872234 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 1947 147 0 20 chr6 154407320 154407619 -34871935 - AluSx SINE Alu -11 301 9 3088 207 9 64 chr6 154407619 154407642 -34871912 + MER82 DNA MER2_type 373 396 -257 2304 98 0 3 chr6 154407642 154407939 -34871615 - AluSq SINE Alu -17 296 1 3088 207 9 64 chr6 154407939 154408249 -34871305 + MER82 DNA MER2_type 396 653 0 388 287 72 33 chr6 154409216 154409397 -34870157 + MIR3 SINE MIR 18 205 -3 2149 107 10 3 chr6 154409982 154410280 -34869274 - AluSg SINE Alu -10 300 1 2368 78 10 0 chr6 154412302 154412597 -34866957 + AluSp SINE Alu 1 298 -15 441 328 78 45 chr6 154412678 154412889 -34866665 + L2 LINE L2 2937 3166 -147 2315 90 13 3 chr6 154412889 154413189 -34866365 - AluSp SINE Alu -10 303 1 441 328 78 45 chr6 154413189 154413334 -34866220 + L2 LINE L2 3166 3305 -8 2284 112 0 0 chr6 154413533 154413838 -34865716 - AluSg SINE Alu -5 305 1 1531 144 41 4 chr6 154414005 154414275 -34865279 - L1MA8 LINE L1 -1 6290 6011 325 257 79 50 chr6 154414958 154415098 -34864456 + LTR16A1 LTR ERVL 1 144 -313 428 274 20 20 chr6 154415148 154415294 -34864260 + LTR16A LTR ERVL 240 385 -65 395 284 46 0 chr6 154415321 154415430 -34864124 - MIR SINE MIR -111 151 38 382 319 130 16 chr6 154415569 154415754 -34863800 + MIR SINE MIR 21 226 -36 2456 73 0 3 chr6 154415811 154416112 -34863442 - AluY SINE Alu -11 300 1 1753 160 20 20 chr6 154418476 154418776 -34860778 + AluJo SINE Alu 1 300 -12 2807 105 36 3 chr6 154419237 154419627 -34859927 - MER57A LTR ERV1 0 403 1 234 0 0 0 chr6 154419722 154419748 -34859806 + (A)n Simple_repeat Simple_repeat 1 26 0 23 33 0 0 chr6 154419947 154419977 -34859577 + AT_rich Low_complexity Low_complexity 1 30 0 2654 170 85 97 chr6 154420514 154420651 -34858903 + MER82 DNA MER2_type 2 139 -514 1688 80 181 106 chr6 154420651 154420696 -34858858 - THE1C LTR MaLR 0 375 335 2235 100 0 3 chr6 154420696 154420997 -34858557 + AluY SINE Alu 1 300 -11 2378 62 0 3 chr6 154420997 154421288 -34858266 + AluY SINE Alu 1 290 -21 1688 80 181 106 chr6 154421288 154421480 -34858074 - THE1C LTR MaLR -40 335 100 2274 99 0 39 chr6 154421480 154421624 -34857930 + AluSx SINE Alu 1 149 -163 2184 115 3 0 chr6 154421624 154421920 -34857634 + AluSp SINE Alu 1 297 -16 2274 99 0 39 chr6 154421920 154422087 -34857467 + AluSx SINE Alu 149 300 -12 1688 80 181 106 chr6 154422087 154422196 -34857358 - THE1C LTR MaLR -275 100 1 2654 170 85 97 chr6 154422196 154422438 -34857116 + MER82 DNA MER2_type 139 382 -271 2321 91 0 3 chr6 154422438 154422736 -34856818 + AluSc SINE Alu 1 297 -12 2654 170 85 97 chr6 154422736 154423014 -34856540 + MER82 DNA MER2_type 382 652 -1 660 285 151 7 chr6 154423095 154423379 -34856175 - L2 LINE L2 -1 3312 2988 513 203 34 75 chr6 154423384 154423586 -34855968 + MER69 DNA AcHobo 14 253 -2273 1042 208 25 0 chr6 154423595 154423792 -34855762 + MER63B DNA MER1_type 1 202 -234 2476 68 0 0 chr6 154423792 154424088 -34855466 - AluY SINE Alu -15 296 1 396 222 0 0 chr6 154424106 154424187 -34855367 - L1MC5 LINE L1 -582 7379 7299 2033 135 13 0 chr6 154425010 154425314 -34854240 - AluSx SINE Alu -4 308 1 563 285 33 80 chr6 154425975 154426277 -34853277 + LTR16A1 LTR ERVL 158 445 -12 1905 148 3 43 chr6 154426519 154426843 -34852711 - AluSx SINE Alu -1 311 1 519 210 159 45 chr6 154427573 154427730 -34851824 - MIR SINE MIR -65 197 23 2008 211 68 102 chr6 154427893 154428862 -34850692 - L1MC5 LINE L1 -35 7926 6991 744 244 141 26 chr6 154428895 154429207 -34850347 - L1MC4 LINE L1 -1 8041 7694 4197 267 126 46 chr6 154429357 154430280 -34849274 - L1MC4a LINE L1 -420 7388 6540 2363 88 0 3 chr6 154430280 154430577 -34848977 + AluY SINE Alu 1 296 -15 4197 267 126 46 chr6 154430577 154430628 -34848926 - L1MC4a LINE L1 -1268 6540 6494 934 176 106 15 chr6 154430628 154430827 -34848727 - MER20 DNA MER1_type -1 218 2 4197 267 126 46 chr6 154430827 154431196 -34848358 - L1MC4a LINE L1 -1314 6494 6156 2268 106 0 6 chr6 154431196 154431507 -34848047 + AluSg SINE Alu 1 309 -1 4197 267 126 46 chr6 154431507 154432407 -34847147 - L1MC4a LINE L1 -1652 6156 5329 2507 54 0 3 chr6 154432407 154432703 -34846851 - AluY SINE Alu -16 295 1 4197 267 126 46 chr6 154432703 154432936 -34846618 - L1MC4a LINE L1 -2479 5329 5116 2275 66 13 17 chr6 154432936 154433238 -34846316 - AluY SINE Alu -10 301 1 4197 267 126 46 chr6 154433238 154433457 -34846097 - L1MC4a LINE L1 -2692 5116 4916 2232 98 0 3 chr6 154433457 154433774 -34845780 + AluSq SINE Alu 1 316 0 4197 267 126 46 chr6 154433774 154433793 -34845761 - L1MC4a LINE L1 -2892 4916 4900 213 39 0 0 chr6 154433793 154433819 -34845735 + (TA)n Simple_repeat Simple_repeat 2 27 0 4197 267 126 46 chr6 154433819 154433973 -34845581 - L1MC4a LINE L1 -2908 4900 4760 2239 92 3 30 chr6 154433973 154434278 -34845276 - AluSq SINE Alu -16 297 1 4197 267 126 46 chr6 154434278 154434375 -34845179 - L1MC4a LINE L1 -3048 4760 4175 1695 116 19 90 chr6 154434499 154434871 -34844683 - MER4A LTR ERV1 0 664 261 707 71 10 20 chr6 154434871 154434970 -34844584 - MER4A LTR ERV1 -566 98 1 827 288 41 19 chr6 154435226 154435493 -34844061 + LTR16A LTR ERVL 173 445 -5 587 336 56 21 chr6 154435500 154435786 -34843768 + L2 LINE L2 2554 2849 -465 2383 93 0 0 chr6 154435938 154436240 -34843314 - AluSg SINE Alu -8 302 1 454 137 0 0 chr6 154436278 154436351 -34843203 + L1MA3 LINE L1 6233 6305 0 260 352 29 0 chr6 154437552 154437657 -34841897 - MIR SINE MIR -47 215 108 1551 181 120 0 chr6 154437928 154438194 -34841360 - AluJo SINE Alu -4 298 1 21 71 0 0 chr6 154439645 154439687 -34839867 + AT_rich Low_complexity Low_complexity 1 42 0 211 203 0 47 chr6 154439871 154439935 -34839619 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 1432 271 88 39 chr6 154439941 154440466 -34839088 - L1ME3A LINE L1 -206 5964 5466 2208 80 0 7 chr6 154440466 154440754 -34838800 + AluY SINE Alu 2 287 -24 387 0 0 0 chr6 154440757 154440800 -34838754 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1432 271 88 39 chr6 154440800 154441010 -34838544 - L1ME3A LINE L1 -705 5465 5188 267 269 93 39 chr6 154441334 154441516 -34838038 + L2 LINE L2 1748 1939 -1375 494 200 0 0 chr6 154441518 154441618 -34837936 + MER53 DNA DNA 1 100 -89 2372 102 0 0 chr6 154442460 154442763 -34836791 + AluSq SINE Alu 1 303 -10 2150 85 0 7 chr6 154442767 154443049 -34836505 + AluY SINE Alu 1 280 -31 189 0 0 0 chr6 154443049 154443070 -34836484 + (T)n Simple_repeat Simple_repeat 1 21 0 1922 117 0 18 chr6 154444851 154445125 -34834429 - AluJb SINE Alu 0 312 44 2239 95 17 0 chr6 154445180 154445475 -34834079 + AluSc SINE Alu 1 300 -9 2332 86 0 7 chr6 154445494 154445797 -34833757 - AluY SINE Alu -10 301 1 514 275 162 50 chr6 154446160 154446660 -34832894 - L2 LINE L2 0 3313 2705 2256 102 7 3 chr6 154446660 154446963 -34832591 + AluSx SINE Alu 1 304 -8 514 275 162 50 chr6 154446963 154447184 -34832370 - L2 LINE L2 -608 2705 2510 2533 68 0 3 chr6 154447719 154448028 -34831526 - AluSc SINE Alu -1 308 1 330 295 9 18 chr6 154448767 154448879 -34830675 + L1ME4a LINE L1 5601 5711 -410 371 311 113 18 chr6 154448881 154449209 -34830345 + L1ME4a LINE L1 5754 6112 -9 219 294 64 46 chr6 154449215 154449324 -34830230 + MIR SINE MIR 131 241 -21 898 250 68 36 chr6 154449335 154449643 -34829911 + MARNA DNA Mariner 263 580 -6 234 0 0 0 chr6 154449950 154449976 -34829578 + (CA)n Simple_repeat Simple_repeat 1 26 0 2150 84 32 7 chr6 154449991 154450318 -34829236 + AluSx SINE Alu 1 312 0 262 261 0 0 chr6 154450318 154450387 -34829167 + (CA)n Simple_repeat Simple_repeat 1 69 0 190 253 117 84 chr6 154450597 154450751 -34828803 + MIR SINE MIR 104 262 0 283 333 0 0 chr6 154450767 154450851 -34828703 + L2 LINE L2 3230 3313 0 204 125 0 0 chr6 154452189 154452221 -34827333 + (T)n Simple_repeat Simple_repeat 1 32 0 183 340 184 0 chr6 154452920 154453023 -34826531 - MIR SINE MIR -61 147 26 183 129 0 0 chr6 154453670 154453701 -34825853 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 2441 73 0 0 chr6 154453711 154454014 -34825540 - AluY SINE Alu -4 307 5 779 80 9 0 chr6 154455866 154455978 -34823576 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 1444 183 42 3 chr6 154455991 154456276 -34823278 - AluJb SINE Alu -16 296 1 2247 80 47 3 chr6 154457475 154457774 -34821780 - AluSp SINE Alu -1 312 1 2097 173 13 31 chr6 154458215 154458596 -34820958 + MLT1A2 LTR MaLR 1 374 0 358 208 69 58 chr6 154458858 154459031 -34820523 + L2 LINE L2 3120 3294 -19 3668 151 41 46 chr6 154459099 154459799 -34819755 + L1MC1 LINE L1 5637 6333 0 713 284 32 44 chr6 154460632 154460733 -34818821 - MIR SINE MIR -3 259 158 1704 151 0 30 chr6 154460733 154461059 -34818495 - AluJb SINE Alu 0 317 1 713 284 32 44 chr6 154461059 154461206 -34818348 - MIR SINE MIR -104 158 13 2446 60 3 3 chr6 154461543 154461842 -34817712 + AluY SINE Alu 1 299 -12 296 291 99 10 chr6 154462232 154462401 -34817153 + MIR SINE MIR 31 262 0 207 0 0 0 chr6 154463164 154463187 -34816367 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2379 88 0 10 chr6 154464030 154464203 -34815351 - AluSg SINE Alu -5 305 135 2451 70 0 3 chr6 154464203 154464503 -34815051 - AluY SINE Alu -12 299 1 2379 88 0 10 chr6 154464503 154464637 -34814917 - AluSg SINE Alu -175 135 1 29 0 0 0 chr6 154464811 154464840 -34814714 + AT_rich Low_complexity Low_complexity 1 29 0 180 182 0 0 chr6 154465029 154465073 -34814481 + T-rich Low_complexity Low_complexity 2 45 0 335 262 49 24 chr6 154466758 154466922 -34812632 - Charlie7 DNA MER1_type -16 2596 2429 2380 83 0 3 chr6 154466929 154467231 -34812323 + AluY SINE Alu 1 301 -10 188 246 71 111 chr6 154467669 154467795 -34811759 - MIR3 SINE MIR -25 183 63 652 284 140 56 chr6 154467839 154468324 -34811230 + MLT1L LTR MaLR 90 615 0 2045 133 7 3 chr6 154469274 154469574 -34809980 + AluJo SINE Alu 1 301 -11 261 0 0 0 chr6 154469578 154469607 -34809947 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2105 129 7 0 chr6 154469614 154469916 -34809638 + AluSx SINE Alu 1 304 -8 291 277 10 10 chr6 154469916 154470017 -34809537 + MIR SINE MIR 47 147 -115 180 111 0 0 chr6 154470466 154470493 -34809061 + (T)n Simple_repeat Simple_repeat 1 27 0 402 273 55 8 chr6 154470599 154470727 -34808827 + MIR SINE MIR 85 218 -44 2249 122 0 0 chr6 154470912 154471223 -34808331 + AluSx SINE Alu 2 312 0 25 0 0 0 chr6 154473024 154473049 -34806505 + AT_rich Low_complexity Low_complexity 1 25 0 269 313 71 10 chr6 154474180 154474279 -34805275 - L2 LINE L2 -30 3242 3138 2285 90 0 3 chr6 154474405 154474694 -34804860 + AluSq SINE Alu 2 289 -24 2470 68 3 0 chr6 154475894 154476202 -34803352 - AluY SINE Alu -2 309 1 186 71 0 0 chr6 154477287 154477315 -34802239 + (GA)n Simple_repeat Simple_repeat 1 28 0 2032 132 7 0 chr6 154480057 154480373 -34799181 + AluSx SINE Alu 1 318 0 399 267 236 26 chr6 154480583 154480774 -34798780 - MIR SINE MIR -12 250 20 588 194 118 82 chr6 154481600 154481683 -34797871 + MER45A DNA AcHobo 2 81 -1500 2195 73 45 3 chr6 154481683 154481969 -34797585 - AluSx SINE Alu -14 298 1 588 194 118 82 chr6 154481969 154482055 -34797499 + MER45A DNA AcHobo 81 177 -1 182 37 37 0 chr6 154483360 154483387 -34796167 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2377 86 10 3 chr6 154483868 154484171 -34795383 + AluSx SINE Alu 1 305 -7 194 283 202 10 chr6 154484622 154484721 -34794833 + MER5C DNA MER1_type 3 120 -204 238 158 0 0 chr6 154484758 154484796 -34794758 + MER5C DNA MER1_type 286 323 -1 506 193 0 0 chr6 154485040 154485123 -34794431 - FRAM SINE Alu -20 156 74 1740 87 0 9 chr6 154535129 154535360 -34744194 + AluSg/x SINE Alu 83 311 -1 1840 282 81 40 chr6 154535361 154536260 -34743294 - L1MC4a LINE L1 -747 5399 4538 2464 61 0 3 chr6 154536260 154536556 -34742998 - AluY SINE Alu -16 295 1 1840 282 81 40 chr6 154536556 154536789 -34742765 - L1MC4a LINE L1 -1608 4538 4316 2255 66 13 17 chr6 154536789 154537091 -34742463 - AluY SINE Alu -10 301 1 1840 282 81 40 chr6 154537091 154537310 -34742244 - L1MC4a LINE L1 -1830 4316 4107 2215 101 0 3 chr6 154537310 154537623 -34741931 + AluSq SINE Alu 1 312 0 1840 282 81 40 chr6 154537623 154537644 -34741910 - L1MC4a LINE L1 -2039 4107 4088 195 42 0 0 chr6 154537644 154537668 -34741886 + (TA)n Simple_repeat Simple_repeat 2 25 0 1840 282 81 40 chr6 154537668 154537822 -34741732 - L1MC4a LINE L1 -2058 4088 4266 2258 88 3 29 chr6 154537822 154538128 -34741426 - AluSq SINE Alu -15 298 1 1840 282 81 40 chr6 154538128 154538225 -34741329 - L1MC4a LINE L1 -1879 4267 4175 1552 116 19 90 chr6 154538349 154538721 -34740833 - MER4A LTR ERV1 0 664 261 657 71 10 20 chr6 154538721 154538820 -34740734 - MER4A LTR ERV1 -566 98 1 736 288 41 19 chr6 154539076 154539343 -34740211 + LTR16A LTR ERVL 173 445 -5 590 364 56 18 chr6 154539350 154539691 -34739863 + L2 LINE L2 2554 2907 -407 2354 96 0 0 chr6 154539788 154540090 -34739464 - AluSg SINE Alu -8 302 1 418 139 0 0 chr6 154540128 154540200 -34739354 + L1MA2 LINE L1 6233 6304 0 264 352 29 0 chr6 154541398 154541503 -34738051 - MIR SINE MIR -47 215 108 1443 181 120 0 chr6 154541774 154542040 -34737514 - AluJo SINE Alu -4 298 1 21 71 0 0 chr6 154543491 154543533 -34736021 + AT_rich Low_complexity Low_complexity 1 42 0 211 203 0 47 chr6 154543717 154543781 -34735773 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 1170 271 88 39 chr6 154543787 154544312 -34735242 - L1ME3A LINE L1 -206 5964 5466 2193 80 0 7 chr6 154544312 154544600 -34734954 + AluY SINE Alu 2 287 -24 387 0 0 0 chr6 154544603 154544646 -34734908 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1170 271 88 39 chr6 154544646 154544856 -34734698 - L1ME3A LINE L1 -705 5465 5188 286 284 88 36 chr6 154545168 154545362 -34734192 + L2 LINE L2 1736 1939 -1375 447 200 0 0 chr6 154545364 154545464 -34734090 + MER53 DNA DNA 1 100 -89 2378 102 0 0 chr6 154546307 154546611 -34732943 + AluSq SINE Alu 1 304 -9 2085 89 0 7 chr6 154546615 154546897 -34732657 + AluY SINE Alu 1 280 -31 2800 7 16 0 chr6 154548707 154549013 -34730541 - AluYa5 SINE Alu 0 311 1 261 0 0 0 chr6 154549107 154549136 -34730418 + (T)n Simple_repeat Simple_repeat 1 29 0 330 295 9 18 chr6 154549754 154549866 -34729688 + L1ME4a LINE L1 5601 5711 -410 386 311 113 18 chr6 154549868 154550196 -34729358 + L1ME4a LINE L1 5754 6112 -9 219 294 64 46 chr6 154550202 154550311 -34729243 + MIR SINE MIR 131 241 -21 898 250 68 36 chr6 154550322 154550630 -34728924 + MARNA DNA Mariner 263 580 -6 252 0 0 0 chr6 154550937 154550965 -34728589 + (CA)n Simple_repeat Simple_repeat 1 28 0 2177 81 32 7 chr6 154550980 154551303 -34728251 + AluSx SINE Alu 1 312 0 262 261 0 0 chr6 154551303 154551372 -34728182 + (CA)n Simple_repeat Simple_repeat 1 69 0 190 253 117 84 chr6 154551582 154551736 -34727818 + MIR SINE MIR 104 262 0 283 333 0 0 chr6 154551752 154551836 -34727718 + L2 LINE L2 3230 3313 0 204 125 0 0 chr6 154553174 154553206 -34726348 + (T)n Simple_repeat Simple_repeat 1 32 0 183 340 184 0 chr6 154553905 154554008 -34725546 - MIR SINE MIR -61 147 26 204 97 0 0 chr6 154554652 154554683 -34724871 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 2442 70 0 0 chr6 154554693 154554992 -34724562 - AluY SINE Alu -8 303 5 815 78 9 0 chr6 154556872 154556988 -34722566 + (TTCC)n Simple_repeat Simple_repeat 4 120 0 189 0 0 0 chr6 154556988 154557009 -34722545 + (TC)n Simple_repeat Simple_repeat 1 21 0 1574 178 43 4 chr6 154557009 154557290 -34722264 - AluJb SINE Alu -10 292 1 2247 80 47 3 chr6 154558489 154558788 -34720766 - AluSp SINE Alu -1 312 1 2097 173 13 31 chr6 154559229 154559610 -34719944 + MLT1A2 LTR MaLR 1 374 0 358 208 69 58 chr6 154559872 154560045 -34719509 + L2 LINE L2 3120 3294 -19 3668 151 41 46 chr6 154560113 154560813 -34718741 + L1MC1 LINE L1 5637 6333 0 713 284 32 44 chr6 154561646 154561747 -34717807 - MIR SINE MIR -3 259 158 1704 151 0 30 chr6 154561747 154562073 -34717481 - AluJb SINE Alu 0 317 1 713 284 32 44 chr6 154562073 154562220 -34717334 - MIR SINE MIR -104 158 13 2446 60 3 3 chr6 154562557 154562856 -34716698 + AluY SINE Alu 1 299 -12 296 291 99 10 chr6 154563246 154563415 -34716139 + MIR SINE MIR 31 262 0 207 0 0 0 chr6 154564178 154564201 -34715353 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2371 88 0 10 chr6 154565044 154565216 -34714338 - AluSg SINE Alu -6 304 135 2451 70 0 3 chr6 154565216 154565516 -34714038 - AluY SINE Alu -12 299 1 2371 88 0 10 chr6 154565516 154565650 -34713904 - AluSg SINE Alu -175 135 1 29 0 0 0 chr6 154565824 154565853 -34713701 + AT_rich Low_complexity Low_complexity 1 29 0 180 182 0 0 chr6 154566042 154566086 -34713468 + T-rich Low_complexity Low_complexity 2 45 0 335 262 49 24 chr6 154567771 154567935 -34711619 - Charlie7 DNA MER1_type -16 2596 2429 2365 86 0 3 chr6 154567942 154568244 -34711310 + AluY SINE Alu 1 301 -10 188 246 71 111 chr6 154568682 154568808 -34710746 - MIR3 SINE MIR -25 183 63 652 284 140 56 chr6 154568852 154569337 -34710217 + MLT1L LTR MaLR 90 615 0 2045 133 7 3 chr6 154570287 154570587 -34708967 + AluJo SINE Alu 1 301 -11 261 0 0 0 chr6 154570591 154570620 -34708934 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2105 129 7 0 chr6 154570627 154570929 -34708625 + AluSx SINE Alu 1 304 -8 291 277 10 10 chr6 154570929 154571030 -34708524 + MIR SINE MIR 47 147 -115 180 111 0 0 chr6 154571479 154571506 -34708048 + (T)n Simple_repeat Simple_repeat 1 27 0 402 273 55 8 chr6 154571612 154571740 -34707814 + MIR SINE MIR 85 218 -44 2249 122 0 0 chr6 154571925 154572236 -34707318 + AluSx SINE Alu 2 312 0 25 0 0 0 chr6 154574037 154574062 -34705492 + AT_rich Low_complexity Low_complexity 1 25 0 269 313 71 10 chr6 154575193 154575292 -34704262 - L2 LINE L2 -30 3242 3138 2285 90 0 3 chr6 154575418 154575707 -34703847 + AluSq SINE Alu 2 289 -24 2470 68 3 0 chr6 154576907 154577215 -34702339 - AluY SINE Alu -2 309 1 186 71 0 0 chr6 154578300 154578328 -34701226 + (GA)n Simple_repeat Simple_repeat 1 28 0 2032 132 7 0 chr6 154581070 154581386 -34698168 + AluSx SINE Alu 1 318 0 399 267 236 26 chr6 154581596 154581787 -34697767 - MIR SINE MIR -12 250 20 588 194 118 82 chr6 154582613 154582696 -34696858 + MER45A DNA AcHobo 2 81 -1500 2195 73 45 3 chr6 154582696 154582982 -34696572 - AluSx SINE Alu -14 298 1 588 194 118 82 chr6 154582982 154583068 -34696486 + MER45A DNA AcHobo 81 177 -1 182 37 37 0 chr6 154584373 154584400 -34695154 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2377 86 10 3 chr6 154584882 154585185 -34694369 + AluSx SINE Alu 1 305 -7 194 283 202 10 chr6 154585636 154585735 -34693819 + MER5C DNA MER1_type 3 120 -204 254 132 0 0 chr6 154585772 154585810 -34693744 + MER5C DNA MER1_type 286 323 -1 1786 164 3 10 chr6 154586054 154586346 -34693208 - AluJo SINE Alu -20 292 3 1656 213 155 27 chr6 154586420 154586866 -34692688 + MLT1D LTR MaLR 3 505 0 2191 105 7 0 chr6 154587204 154587498 -34692056 + AluSg SINE Alu 1 296 -14 2051 135 0 0 chr6 154588165 154588453 -34691101 - AluSx SINE Alu -24 288 1 1041 219 9 23 chr6 154589195 154589414 -34690140 - MER58A DNA MER1_type 0 224 9 2149 124 20 0 chr6 154589888 154590187 -34689367 - AluSx SINE Alu -7 305 1 409 95 126 147 chr6 154590567 154590597 -34688957 - FLAM_A SINE Alu -178 133 104 2666 10 0 0 chr6 154590597 154590943 -34688611 + AluYb8 SINE Alu 1 346 0 409 95 126 147 chr6 154590943 154591006 -34688548 - FLAM_A SINE Alu -207 104 41 1128 64 29 0 chr6 154591044 154591184 -34688370 - L1MA3 LINE L1 -1 6304 6161 2931 131 32 11 chr6 154591359 154591718 -34687836 - L1 LINE L1 -1365 6200 5825 2351 105 0 0 chr6 154591718 154592023 -34687531 - AluSp SINE Alu -8 305 1 2931 131 32 11 chr6 154592023 154592191 -34687363 - L1 LINE L1 -1740 5825 5662 * 6090 80 17 0 chr6 154592188 154592999 -34686555 - L1PA13 LINE L1 0 6163 5339 1268 129 91 10 chr6 154593012 154593221 -34686333 - MER30 DNA MER1_type 0 230 5 15923 157 18 32 chr6 154593223 154594432 -34685122 - L1 LINE L1 -1900 5665 4440 2289 83 7 20 chr6 154594432 154594733 -34684821 + AluY SINE Alu 1 297 -14 15923 157 18 32 chr6 154594733 154595083 -34684471 - L1 LINE L1 -3125 4440 4087 555 47 47 0 chr6 154595083 154595169 -34684385 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 15923 157 18 32 chr6 154595169 154595662 -34683892 - L1 LINE L1 -3478 4087 3589 2385 88 0 0 chr6 154595662 154595968 -34683586 - AluY SINE Alu -5 306 1 15923 157 18 32 chr6 154595968 154598127 -34681427 - L1 LINE L1 -3976 3589 1401 2287 139 150 5 chr6 154598127 154598501 -34681053 - MSTA LTR MaLR 0 428 1 15923 157 18 32 chr6 154598501 154598640 -34680914 - L1 LINE L1 -6164 1401 1262 2261 76 0 17 chr6 154598640 154598806 -34680748 - AluY SINE Alu -14 297 137 2479 63 0 0 chr6 154598806 154599108 -34680446 - AluY SINE Alu -9 302 1 2261 76 0 17 chr6 154599108 154599243 -34680311 - AluY SINE Alu -174 137 1 15923 157 18 32 chr6 154599243 154600329 -34679225 - L1 LINE L1 -6303 1262 135 2409 61 14 0 chr6 154600329 154600625 -34678929 - AluY SINE Alu -11 300 1 15923 157 18 32 chr6 154600625 154600738 -34678816 - L1 LINE L1 -7430 135 22 229 306 112 0 chr6 154601156 154601254 -34678300 - MIR SINE MIR -70 192 84 219 337 59 59 chr6 154601573 154601742 -34677812 + L3 LINE CR1 246 414 -1163 516 313 119 4 chr6 154601780 154602007 -34677547 - MIR SINE MIR -9 253 1 334 336 24 26 chr6 154602024 154602238 -34677316 + L3 LINE CR1 463 728 -849 256 288 12 50 chr6 154602353 154602433 -34677121 - MIR SINE MIR -55 153 77 450 349 144 15 chr6 154602460 154603058 -34676496 + L3 LINE CR1 726 1468 -109 183 226 191 48 chr6 154603157 154603241 -34676313 + L2 LINE L2 3202 3297 -16 287 355 50 8 chr6 154603367 154603488 -34676066 + L2 LINE L2 2919 3044 -269 2581 169 21 28 chr6 154603645 154603712 -34675842 + MLT1C LTR MaLR 1 67 -400 3571 110 12 80 chr6 154603712 154604097 -34675457 + MER1A DNA MER1_type 1 338 -2362 2371 54 34 3 chr6 154604097 154604392 -34675162 - AluY SINE Alu -7 304 1 3571 110 12 80 chr6 154604392 154604571 -34674983 + MER1A DNA MER1_type 338 527 0 2581 169 21 28 chr6 154604571 154604971 -34674583 + MLT1C LTR MaLR 67 465 -2 204 257 135 27 chr6 154604971 154605045 -34674509 + L2 LINE L2 3188 3269 -3 206 214 0 0 chr6 154605046 154605088 -34674466 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 2278 92 0 3 chr6 154605817 154606110 -34673444 + AluY SINE Alu 5 296 -15 4773 126 9 9 chr6 154606563 154607232 -34672322 - L1PA13 LINE L1 -1 6162 5491 2648 58 3 0 chr6 154607232 154607542 -34672012 - AluY SINE Alu 0 311 1 4773 126 9 9 chr6 154607542 154607565 -34671989 - L1PA13 LINE L1 -671 5492 5470 1896 194 16 38 chr6 154607695 154608062 -34671492 + MLT1A1 LTR MaLR 5 363 -2 279 266 43 21 chr6 154608192 154608286 -34671268 - MIR3 SINE MIR -1 207 112 197 312 32 32 chr6 154608414 154608507 -34671047 - MIR SINE MIR -93 115 23 521 214 30 46 chr6 154608828 154608929 -34670625 - MIR SINE MIR -14 248 148 2440 96 0 0 chr6 154608929 154609242 -34670312 - AluSp SINE Alu 0 313 1 521 214 30 46 chr6 154609242 154609271 -34670283 - MIR SINE MIR -114 148 120 390 357 16 8 chr6 154609286 154609412 -34670142 - L2 LINE L2 -5 3267 3141 459 275 78 12 chr6 154611623 154611790 -34667764 + MIR SINE MIR 37 214 -48 2066 103 7 11 chr6 154611794 154612137 -34667417 + AluSg SINE Alu 1 342 0 1622 124 101 0 chr6 154612653 154612948 -34666606 - AluSx SINE Alu 0 321 1 263 271 75 28 chr6 154613749 154613856 -34665698 + MIR SINE MIR 37 148 -114 309 211 0 14 chr6 154614502 154614573 -34664981 + L1MC4 LINE L1 6640 6709 -1333 1969 126 7 0 chr6 154614590 154614859 -34664695 - AluSx SINE Alu -41 271 1 470 301 30 30 chr6 154615061 154615227 -34664327 + MIR3 SINE MIR 42 207 -1 280 278 322 20 chr6 154615534 154615789 -34663765 - MLT1I LTR MaLR -3 406 75 2378 91 3 7 chr6 154616485 154616793 -34662761 - AluSc SINE Alu -2 307 1 2476 143 67 5 chr6 154617077 154617497 -34662057 - Tigger2 DNA MER2_type 0 2718 2273 424 137 27 41 chr6 154617477 154617550 -34662004 - Tigger2 DNA MER2_type -2642 76 5 * 2150 128 3 0 chr6 154617632 154617936 -34661618 + AluSg SINE Alu 1 305 -5 2471 64 0 10 chr6 154619886 154620198 -34659356 - AluY SINE Alu -2 309 1 427 319 92 49 chr6 154624955 154625422 -34654132 - L2 LINE L2 0 3313 2827 622 152 11 152 chr6 154626584 154626695 -34652859 + MER3 DNA MER1_type 24 149 -60 2139 124 3 0 chr6 154626695 154626994 -34652560 - AluSg SINE Alu -10 300 1 622 152 11 152 chr6 154626994 154627038 -34652516 + MER3 DNA MER1_type 149 152 -57 1571 176 3 67 chr6 154627038 154627350 -34652204 - AluJb SINE Alu -20 292 1 622 152 11 152 chr6 154627350 154627377 -34652177 + MER3 DNA MER1_type 152 181 -28 1855 127 60 0 chr6 154628432 154628558 -34650996 + AluSq SINE Alu 1 118 -195 257 0 30 0 chr6 154628558 154628591 -34650963 + (CAA)n Simple_repeat Simple_repeat 3 36 0 1855 127 60 0 chr6 154628591 154628748 -34650806 + AluSq SINE Alu 118 301 -12 30 69 0 0 chr6 154631307 154631365 -34648189 + AT_rich Low_complexity Low_complexity 1 58 0 2508 81 0 0 chr6 154631658 154631968 -34647586 + AluY SINE Alu 1 310 -1 211 274 0 0 chr6 154632426 154632477 -34647077 + (TCCA)n Simple_repeat Simple_repeat 4 54 0 268 345 101 14 chr6 154632477 154632625 -34646929 - L2 LINE L2 -1 3271 3111 2298 96 3 3 chr6 154632744 154633037 -34646517 - AluSq SINE Alu -20 293 1 28 48 0 0 chr6 154633560 154633602 -34645952 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr6 154634541 154634571 -34644983 + AT_rich Low_complexity Low_complexity 1 30 0 2153 100 7 0 chr6 154634605 154634913 -34644641 + AluSx SINE Alu 1 310 0 255 366 0 0 chr6 154635934 154636016 -34643538 - L2 LINE L2 -1 3271 3190 1572 229 52 44 chr6 154636415 154636905 -34642649 - MLT1F LTR MaLR -6 536 102 2342 97 0 3 chr6 154636905 154637203 -34642351 + AluSq SINE Alu 1 297 -16 1572 229 52 44 chr6 154637203 154637304 -34642250 - MLT1F LTR MaLR -440 102 3 756 333 94 40 chr6 154637304 154637878 -34641676 - L2 LINE L2 -562 2752 2148 356 238 0 0 chr6 154637951 154638031 -34641523 + MLT1I LTR MaLR 64 143 -266 230 237 43 54 chr6 154638217 154638310 -34641244 + MLT1I LTR MaLR 318 409 0 2310 114 0 0 chr6 154638347 154638655 -34640899 - AluSx SINE Alu -4 308 1 2293 112 0 0 chr6 154638852 154639156 -34640398 - AluSc SINE Alu -3 306 3 315 0 0 0 chr6 154640638 154640673 -34638881 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr6 154641020 154641041 -34638513 + AT_rich Low_complexity Low_complexity 1 21 0 511 324 60 36 chr6 154641668 154641918 -34637636 + MIR SINE MIR 1 256 -6 1676 124 37 4 chr6 154641937 154642179 -34637375 + AluSc SINE Alu 1 250 -59 213 39 0 0 chr6 154642179 154642205 -34637349 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 376 354 23 11 chr6 154643781 154643956 -34635598 - L3 LINE CR1 -1 1576 1400 840 289 9 4 chr6 154644030 154644258 -34635296 - MIR SINE MIR -20 242 14 841 126 0 0 chr6 154644710 154644829 -34634725 + MLT1A1 LTR MaLR 243 361 -4 3205 254 78 40 chr6 154644834 154645762 -34633792 - L1M4 LINE L1 -1856 4290 3399 2147 88 22 4 chr6 154645762 154646066 -34633488 - AluSc SINE Alu 0 309 1 3205 254 78 40 chr6 154646066 154646292 -34633262 - L1M4 LINE L1 -2747 3399 3183 828 274 42 0 chr6 154646292 154646507 -34633047 - MER58A DNA MER1_type 0 224 1 3205 254 78 40 chr6 154646507 154646693 -34632861 - L1M4 LINE L1 -2963 3183 2896 1536 215 50 30 chr6 154647881 154648319 -34631235 - L1M4 LINE L1 -3225 2921 2475 5113 94 7 29 chr6 154648339 154649054 -34630500 - L1PB1 LINE L1 -1 6150 5452 28 0 0 0 chr6 154649497 154649525 -34630029 + AT_rich Low_complexity Low_complexity 1 28 0 956 200 86 20 chr6 154650225 154650470 -34629084 - MIR SINE MIR -1 261 1 276 232 80 9 chr6 154651722 154651834 -34627720 + MER113 DNA MER1_type? 2 121 -400 2988 187 83 47 chr6 154651852 154653238 -34626316 - pTR5 LTR ERV1 0 2438 49 535 243 18 0 chr6 154654019 154654130 -34625424 - MER81 DNA DNA 0 114 2 267 331 65 8 chr6 154654256 154654379 -34625175 + L2 LINE L2 2690 2819 -495 238 278 14 14 chr6 154654379 154654451 -34625103 - MER5A DNA MER1_type 0 189 118 196 223 11 11 chr6 154655404 154655498 -34624056 + (CA)n Simple_repeat Simple_repeat 1 94 0 2459 78 81 0 chr6 154656263 154656610 -34622944 - THE1C LTR MaLR 0 375 1 2124 148 12 36 chr6 154656926 154657339 -34622215 - Tigger2a DNA MER2_type -31 403 1 19249 136 17 65 chr6 154657931 154658751 -34620803 - L1M1 LINE L1 -3918 3647 2789 2207 86 0 0 chr6 154658751 154659076 -34620478 + AluY SINE Alu 2 326 0 19249 136 17 65 chr6 154659076 154659403 -34620151 - L1M1 LINE L1 -4776 2789 2448 1111 135 18 0 chr6 154659403 154659573 -34619981 - AluSg/x SINE Alu -3 309 137 19249 136 17 65 chr6 154659573 154661983 -34617571 - L1M1 LINE L1 -5117 2448 98 1457 135 31 0 chr6 154661983 154662205 -34617349 - THE1B LTR MaLR -135 229 1 908 233 159 4 chr6 154662205 154662620 -34616934 - MLT1E3 LTR MaLR -151 465 1 186 293 0 0 chr6 154662719 154662760 -34616794 + L2 LINE L2 3263 3303 -10 1684 196 0 7 chr6 154663582 154663862 -34615692 + AluJo SINE Alu 3 280 -32 21 0 0 0 chr6 154664090 154664111 -34615443 + AT_rich Low_complexity Low_complexity 1 21 0 2412 82 3 3 chr6 154664467 154664772 -34614782 + AluSq SINE Alu 1 305 -8 537 274 139 28 chr6 154666162 154666414 -34613140 + L2 LINE L2 3028 3307 -6 2471 99 0 0 chr6 154668065 154668377 -34611177 + AluSp SINE Alu 1 312 -1 291 253 88 0 chr6 154669168 154669259 -34610295 + L2 LINE L2 3168 3266 -6 420 294 59 13 chr6 154670241 154670479 -34609075 - LTR16A1 LTR ERVL 0 457 209 189 332 138 53 chr6 154670764 154670890 -34608664 + L2 LINE L2 2554 2668 -646 2134 100 65 0 chr6 154670890 154671180 -34608374 - AluSc SINE Alu 0 309 1 189 332 138 53 chr6 154671180 154671300 -34608254 + L2 LINE L2 2668 2821 -493 1438 210 40 31 chr6 154671335 154671688 -34607866 + MLT1A1 LTR MaLR 1 356 -9 2503 161 44 15 chr6 154672570 154673024 -34606530 + MLT1C LTR MaLR 1 467 0 266 304 10 20 chr6 154674011 154674113 -34605441 + GA-rich Low_complexity Low_complexity 2 102 0 710 302 133 40 chr6 154674954 154675507 -34604047 + L2 LINE L2 2699 3295 -18 338 342 50 15 chr6 154675519 154675718 -34603836 + MIR SINE MIR 56 261 -1 186 383 9 28 chr6 154675995 154676102 -34603452 + L3 LINE CR1 354 458 -1119 205 294 20 0 chr6 154676958 154677009 -34602545 + L3 LINE CR1 1483 1534 -43 312 329 75 31 chr6 154677069 154677230 -34602324 - MIR SINE MIR -74 188 21 26 0 0 0 chr6 154677439 154677465 -34602089 + AT_rich Low_complexity Low_complexity 1 26 0 288 296 114 51 chr6 154678141 154678317 -34601237 + MIR SINE MIR 20 206 -56 198 0 0 0 chr6 154678375 154678397 -34601157 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 417 277 66 30 chr6 154679912 154680091 -34599463 - MIR3 SINE MIR -62 146 4 202 327 0 19 chr6 154680285 154680337 -34599217 + MIR SINE MIR 43 93 -115 575 200 17 11 chr6 154680756 154680931 -34598623 + CT-rich Low_complexity Low_complexity 2 177 0 242 221 104 0 chr6 154681002 154681079 -34598475 - MER117 DNA MER1_type 0 197 113 21 0 0 0 chr6 154681495 154681516 -34598038 + AT_rich Low_complexity Low_complexity 1 21 0 774 287 41 12 chr6 154681670 154681914 -34597640 + MIR SINE MIR 6 256 -6 227 359 65 11 chr6 154682534 154682626 -34596928 + MIR SINE MIR 53 149 -113 2693 39 0 0 chr6 154682655 154682966 -34596588 - AluY SINE Alu 0 311 1 21 71 0 0 chr6 154683062 154683104 -34596450 + AT_rich Low_complexity Low_complexity 1 42 0 1259 135 20 33 chr6 154683593 154683838 -34595716 + MER7A DNA MER2_type 1 240 -106 247 79 66 118 chr6 154683860 154683936 -34595618 + MER7A DNA MER2_type 186 257 -89 909 137 20 0 chr6 154683940 154684086 -34595468 + MER7A DNA MER2_type 188 336 0 2880 271 82 48 chr6 154685517 154685734 -34593820 + L1ME3A LINE L1 2904 3112 -3034 2606 47 0 0 chr6 154685734 154686032 -34593522 + AluY SINE Alu 1 298 -13 2880 271 82 48 chr6 154686032 154688105 -34591449 + L1ME3A LINE L1 3112 5272 -874 1337 271 71 6 chr6 154688202 154688682 -34590872 + L1ME3A LINE L1 5616 6126 -44 475 282 69 32 chr6 154688889 154689077 -34590477 - MIR SINE MIR -14 248 54 229 429 34 8 chr6 154689233 154689352 -34590202 - L2 LINE L2 -11 3261 3140 243 61 0 0 chr6 154689352 154689385 -34590169 + (TA)n Simple_repeat Simple_repeat 1 33 0 1352 214 123 75 chr6 154689412 154689973 -34589581 + MLT1G LTR MaLR 1 588 -2 309 389 27 5 chr6 154689977 154690162 -34589392 + MER5A DNA MER1_type 1 189 0 231 366 0 0 chr6 154692266 154692337 -34587217 - L2 LINE L2 -557 2757 2687 546 287 93 5 chr6 154694002 154694218 -34585336 + MIR SINE MIR 18 252 -10 364 248 43 75 chr6 154694389 154694550 -34585004 + L1MC4a LINE L1 5851 6006 -1802 381 266 265 13 chr6 154694754 154694945 -34584609 - MIR SINE MIR -21 241 9 359 343 18 0 chr6 154694993 154695159 -34584395 - L3 LINE CR1 -888 689 521 226 254 45 0 chr6 154695232 154695299 -34584255 - L3 LINE CR1 -1192 385 316 308 391 29 0 chr6 154697572 154697710 -34581844 + MIR3 SINE MIR 55 196 -12 228 264 0 38 chr6 154697927 154697980 -34581574 - MIR SINE MIR -75 133 83 317 354 0 18 chr6 154698287 154698400 -34581154 - MIR SINE MIR -68 140 30 1774 118 20 0 chr6 154698893 154699139 -34580415 + AluSx SINE Alu 47 297 -15 407 309 18 83 chr6 154699279 154699319 -34580235 - L3 LINE CR1 -9 1568 1527 931 225 147 31 chr6 154699319 154699674 -34579880 + MSTD LTR MaLR 1 396 0 407 309 18 83 chr6 154699674 154699850 -34579704 - L3 LINE CR1 -50 1527 1366 356 197 4 0 chr6 154700498 154700585 -34578969 + Alu SINE Alu 239 298 -4 505 71 12 24 chr6 154700592 154700676 -34578878 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 468 86 14 0 chr6 154700844 154700914 -34578640 - Alu SINE Alu -239 71 1 6734 136 16 4 chr6 154700914 154702357 -34577197 + L1MA3 LINE L1 4845 6305 0 723 219 75 6 chr6 154702375 154702535 -34577019 + MLT1E2 LTR MaLR 454 624 -2 182 349 32 0 chr6 154702981 154703044 -34576510 - L2 LINE L2 -269 3003 2939 5002 200 11 129 chr6 154703160 154704233 -34575321 - L1P LINE L1 -904 5242 4307 868 94 16 0 chr6 154704233 154704360 -34575194 - AluSc SINE Alu -8 301 173 5002 200 11 129 chr6 154704360 154704882 -34574672 - L1P LINE L1 -1839 4307 3725 545 301 63 16 chr6 154704889 154705060 -34574494 - L1MEc LINE L1 -5044 1352 1191 2271 95 24 0 chr6 154705060 154705355 -34574199 - AluY SINE Alu -9 302 1 2183 107 7 7 chr6 154705355 154705654 -34573900 - AluSq SINE Alu -14 299 1 545 301 63 16 chr6 154705654 154705797 -34573757 - L1MEc LINE L1 -5204 1192 1022 2800 248 48 29 chr6 154705833 154706640 -34572914 - L1MEc LINE L1 -5451 945 155 2240 64 40 3 chr6 154706640 154706936 -34572618 + AluY SINE Alu 2 308 -3 2800 248 48 29 chr6 154706936 154706965 -34572589 - L1MEc LINE L1 -6241 155 128 216 0 0 0 chr6 154706965 154706989 -34572565 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2800 248 48 29 chr6 154706989 154707045 -34572509 - L1MEc LINE L1 -6268 128 35 220 333 121 0 chr6 154707070 154707169 -34572385 - L3 LINE CR1 -436 1141 1031 1266 89 6 0 chr6 154707186 154707354 -34572200 - AluY SINE Alu -10 301 133 2735 19 0 3 chr6 154707354 154707661 -34571893 - AluY SINE Alu -3 308 3 984 147 57 0 chr6 154707875 154708055 -34571499 - AluSg/x SINE Alu 0 308 120 312 304 0 22 chr6 154708587 154708679 -34570875 + L1MC4 LINE L1 6614 6703 -1339 518 352 69 5 chr6 154708757 154708973 -34570581 + MIR SINE MIR 21 250 -12 237 65 0 0 chr6 154709160 154709191 -34570363 + (TC)n Simple_repeat Simple_repeat 1 31 0 851 232 5 5 chr6 154710780 154710817 -34568737 - MER3 DNA MER1_type 0 209 173 1527 179 78 52 chr6 154710817 154710878 -34568676 - MSTD LTR MaLR 0 396 338 2471 67 0 6 chr6 154710878 154711191 -34568363 + AluY SINE Alu 1 311 0 1527 179 78 52 chr6 154711191 154711515 -34568039 - MSTD LTR MaLR -58 338 1 851 232 5 5 chr6 154711515 154711675 -34567879 - MER3 DNA MER1_type -35 174 12 426 295 133 0 chr6 154712180 154712353 -34567201 + L2 LINE L2 376 571 -2743 3647 147 113 33 chr6 154712355 154713116 -34566438 - LTR12 LTR ERV1 0 826 5 2639 169 15 30 chr6 154713135 154713727 -34565827 - pTR5 LTR ERV1 -1087 1351 769 1405 270 178 13 chr6 154713727 154714408 -34565146 + L2 LINE L2 550 1342 -1972 577 221 53 0 chr6 154714610 154714723 -34564831 - AluSg/x SINE Alu -30 282 164 2349 90 3 0 chr6 154714849 154715149 -34564405 - AluSx SINE Alu -11 301 1 509 280 75 8 chr6 154715503 154715742 -34563812 - L1ME LINE L1 -305 5816 5562 23 0 0 0 chr6 154715981 154716004 -34563550 + AT_rich Low_complexity Low_complexity 1 23 0 453 321 28 33 chr6 154716759 154716974 -34562580 + MIR SINE MIR 7 220 -42 881 228 6 0 chr6 154717116 154717296 -34562258 - L1PB4 LINE L1 -85 6071 5891 2459 78 0 3 chr6 154718167 154718476 -34561078 + AluY SINE Alu 1 308 -3 279 0 0 0 chr6 154718593 154718624 -34560930 + (TG)n Simple_repeat Simple_repeat 2 32 0 27 0 0 0 chr6 154718624 154718651 -34560903 + AT_rich Low_complexity Low_complexity 1 27 0 192 40 0 0 chr6 154718653 154718678 -34560876 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 2181 87 0 4 chr6 154718796 154719071 -34560483 - AluSq SINE Alu -26 287 14 672 139 89 19 chr6 154719121 154719279 -34560275 + L1MB2 LINE L1 6001 6169 -2 865 284 124 17 chr6 154720480 154720997 -34558557 - L2 LINE L2 -55 3258 2671 819 260 100 59 chr6 154721212 154721774 -34557780 - L1ME4a LINE L1 -1 6120 5536 280 333 0 20 chr6 154721806 154721908 -34557646 + L3 LINE CR1 1390 1489 -88 23 86 0 0 chr6 154722189 154722247 -34557307 + AT_rich Low_complexity Low_complexity 1 58 0 348 277 66 22 chr6 154722359 154722496 -34557058 - L2 LINE L2 -7 3306 3164 2201 104 7 13 chr6 154722924 154723233 -34556321 + AluSx SINE Alu 1 307 -5 2040 118 21 3 chr6 154723404 154723693 -34555861 + AluSx SINE Alu 3 296 -16 2587 57 0 13 chr6 154724251 154724566 -34554988 + AluY SINE Alu 1 311 0 23 33 0 0 chr6 154724958 154724988 -34554566 + AT_rich Low_complexity Low_complexity 1 30 0 631 267 36 23 chr6 154726677 154726848 -34552706 - MSTD LTR MaLR -149 308 114 2252 124 0 0 chr6 154726848 154727155 -34552399 - AluSc SINE Alu -2 307 1 631 267 36 23 chr6 154727155 154727271 -34552283 - MSTD LTR MaLR -343 114 1 1462 255 78 11 chr6 154727271 154728195 -34551359 - L1ME LINE L1 -551 6426 5426 705 251 166 39 chr6 154728204 154728715 -34550839 - L1ME LINE L1 -4975 1880 1305 259 301 41 20 chr6 154729420 154729503 -34550051 - L1ME LINE L1 -6691 168 79 2008 109 0 0 chr6 154729503 154729770 -34549784 - AluSc SINE Alu -6 303 37 259 301 41 20 chr6 154729770 154729832 -34549722 - L1ME LINE L1 -6780 79 20 33 43 0 0 chr6 154730480 154730527 -34549027 + AT_rich Low_complexity Low_complexity 1 47 0 7296 246 18 34 chr6 154730609 154731521 -34548033 + L1 LINE L1 3364 4289 -1857 2264 94 0 13 chr6 154731521 154731819 -34547735 + AluY SINE Alu 1 294 -17 7296 246 18 34 chr6 154731819 154732931 -34546623 + L1 LINE L1 4289 5355 -791 13143 177 23 27 chr6 154732964 154734364 -34545190 + L1MA4A LINE L1 2568 3973 -2330 2436 77 0 6 chr6 154734364 154734675 -34544879 + AluY SINE Alu 2 310 -1 13143 177 23 27 chr6 154734675 154736660 -34542894 + L1MA4A LINE L1 3973 5940 -363 198 314 86 0 chr6 154737037 154737107 -34542447 - L2 LINE L2 -58 3255 3180 865 288 90 10 chr6 154737408 154737807 -34541747 + L1ME4a LINE L1 5357 5787 -334 319 248 113 8 chr6 154738063 154738196 -34541358 + L1ME4a LINE L1 5964 6110 -11 221 261 92 0 chr6 154738659 154738724 -34540830 + L2 LINE L2 3241 3311 -2 1902 158 0 7 chr6 154738724 154739021 -34540533 - AluSx SINE Alu -17 295 1 965 209 10 0 chr6 154739262 154739463 -34540091 + L1MB2 LINE L1 5890 6092 -79 468 289 5 43 chr6 154739460 154739622 -34539932 + L1MCa LINE L1 349 484 -5561 * 1510 107 51 0 chr6 154739655 154739870 -34539684 - MER30 DNA MER1_type -3 227 2 460 243 0 0 chr6 154740021 154740128 -34539426 + L1MCa LINE L1 570 676 -5369 * 819 211 191 36 chr6 154740112 154740468 -34539086 + L1MCa LINE L1 1111 1521 -5043 * 849 164 74 11 chr6 154740449 154740638 -34538916 + L1MC3 LINE L1 6898 7098 -687 362 207 23 11 chr6 154740640 154740727 -34538827 + MLT1F1 LTR MaLR 38 125 -442 2981 194 17 2 chr6 154740734 154741312 -34538242 + L1MC3 LINE L1 7199 7785 0 264 261 66 81 chr6 154741324 154741441 -34538113 + L1 LINE L1 4962 5079 -1067 2294 79 0 3 chr6 154741441 154741746 -34537808 - AluY SINE Alu -7 304 1 264 261 66 81 chr6 154741746 154741899 -34537655 + L1 LINE L1 5079 5228 -918 378 0 0 0 chr6 154744235 154744277 -34535277 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 71 0 0 chr6 154745336 154745378 -34534176 + AT_rich Low_complexity Low_complexity 1 42 0 2139 113 7 3 chr6 154745506 154745808 -34533746 + AluSp SINE Alu 1 303 -10 229 254 16 0 chr6 154748680 154748743 -34530811 - MLT1I LTR MaLR -49 360 297 227 327 100 7 chr6 154749002 154749152 -34530402 - MLT1I LTR MaLR -188 221 58 1794 213 258 19 chr6 154749618 154750340 -34529214 - MER97a DNA MER1_type? 0 894 1 521 280 0 8 chr6 154750559 154750684 -34528870 + MIR SINE MIR 17 140 -122 502 279 19 39 chr6 154751634 154751788 -34527766 - MIR SINE MIR -55 207 57 243 0 0 0 chr6 154751788 154751815 -34527739 + (TG)n Simple_repeat Simple_repeat 2 28 0 25 0 0 0 chr6 154751875 154751900 -34527654 + AT_rich Low_complexity Low_complexity 1 25 0 290 218 26 0 chr6 154753938 154754016 -34525538 - MER116 DNA Mariner 0 80 1 22 80 0 0 chr6 154754040 154754090 -34525464 + AT_rich Low_complexity Low_complexity 1 50 0 648 254 35 28 chr6 154754300 154754584 -34524970 - HAL1 LINE L1 -1299 1208 923 380 307 92 48 chr6 154755067 154755297 -34524257 + MIR SINE MIR 15 255 -7 1615 140 17 70 chr6 154755314 154755641 -34523913 + AluSq SINE Alu 1 311 0 1170 167 22 13 chr6 154755647 154755874 -34523680 + L1MC3 LINE L1 7535 7763 -22 24 32 0 0 chr6 154755874 154755905 -34523649 + AT_rich Low_complexity Low_complexity 1 31 0 310 345 59 17 chr6 154756762 154756881 -34522673 - L2 LINE L2 -12 3260 3137 493 290 32 32 chr6 154756905 154757153 -34522401 - MIR SINE MIR -9 253 6 441 264 20 27 chr6 154757435 154757583 -34521971 + MIR SINE MIR 8 154 -108 215 246 49 16 chr6 154759943 154760004 -34519550 - L3 LINE CR1 0 1577 1515 1873 106 55 4 chr6 154760732 154761005 -34518549 + AluSq SINE Alu 2 288 -25 30 0 0 0 chr6 154761005 154761035 -34518519 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr6 154761064 154761084 -34518470 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 24 67 0 0 chr6 154761225 154761270 -34518284 + AT_rich Low_complexity Low_complexity 1 45 0 1880 154 7 3 chr6 154761450 154761749 -34517805 + AluSx SINE Alu 3 302 -10 219 125 0 0 chr6 154761805 154761845 -34517709 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 218 339 121 0 chr6 154811885 154812009 -34467545 + MIR SINE MIR 47 185 -77 285 374 54 39 chr6 154812066 154812475 -34467079 + L2 LINE L2 2553 2967 -347 180 0 0 0 chr6 154812636 154812656 -34466898 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2199 94 7 0 chr6 154812658 154812944 -34466610 - AluSc SINE Alu -21 288 1 3077 290 113 57 chr6 154812950 154815323 -34464231 - HAL1 LINE L1 -2 2505 1 318 350 133 10 chr6 154817359 154817562 -34461992 - MIR SINE MIR -3 259 32 791 205 39 56 chr6 154817858 154818092 -34461462 + L2 LINE L2 3084 3313 0 203 153 28 42 chr6 154819731 154819803 -34459751 + GA-rich Low_complexity Low_complexity 4 74 0 201 194 65 48 chr6 154820744 154820806 -34458748 + MER91B DNA MER1_type 1 63 -127 315 341 33 0 chr6 154821309 154821437 -34458117 - MIR SINE MIR -66 142 34 185 184 41 0 chr6 154823232 154823281 -34456273 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 1121 266 40 57 chr6 154823476 154823953 -34455601 + MLT1J LTR MaLR 36 504 -7 2451 80 0 0 chr6 154825034 154825345 -34454209 + AluY SINE Alu 1 311 0 2379 99 0 0 chr6 154825356 154825668 -34453886 + AluSx SINE Alu 1 312 0 236 288 12 12 chr6 154825996 154826076 -34453478 + CT-rich Low_complexity Low_complexity 6 85 0 2065 130 0 7 chr6 154826289 154826609 -34452945 + AluJb SINE Alu 1 318 0 459 35 0 0 chr6 154826712 154826769 -34452785 + (CA)n Simple_repeat Simple_repeat 1 57 0 13176 135 44 41 chr6 154827130 154828011 -34451543 + Tigger1 DNA MER2_type 24 901 -1517 2215 163 50 24 chr6 154828011 154828386 -34451168 + MSTA LTR MaLR 1 390 -38 2222 95 3 3 chr6 154828386 154828680 -34450874 - AluY SINE Alu -17 294 1 2215 163 50 24 chr6 154828680 154828721 -34450833 + MSTA LTR MaLR 390 428 0 13176 135 44 41 chr6 154828721 154829301 -34450253 + Tigger1 DNA MER2_type 901 1478 -940 2185 87 14 0 chr6 154829301 154829589 -34449965 + AluY SINE Alu 20 311 0 13176 135 44 41 chr6 154829589 154830142 -34449412 + Tigger1 DNA MER2_type 1478 2028 -390 2805 13 0 0 chr6 154830142 154830450 -34449104 + AluYb8 SINE Alu 1 308 -10 13176 135 44 41 chr6 154830450 154830546 -34449008 + Tigger1 DNA MER2_type 2028 2122 -296 2372 77 0 29 chr6 154830546 154830858 -34448696 + AluSc SINE Alu 1 303 -6 13176 135 44 41 chr6 154830858 154830912 -34448642 + Tigger1 DNA MER2_type 2122 2174 -244 1085 101 0 0 chr6 154830912 154831071 -34448483 - L1PA13 LINE L1 0 6163 6005 13176 135 44 41 chr6 154831071 154831169 -34448385 + Tigger1 DNA MER2_type 2174 2270 -148 2484 73 0 0 chr6 154831169 154831471 -34448083 - AluY SINE Alu -9 302 1 13176 135 44 41 chr6 154831471 154831589 -34447965 + Tigger1 DNA MER2_type 2270 2417 -1 318 299 56 35 chr6 154833376 154833520 -34446034 - MIR SINE MIR -53 209 63 2396 75 0 0 chr6 154833769 154834074 -34445480 + AluY SINE Alu 1 305 -6 25 31 0 0 chr6 154834124 154834156 -34445398 + AT_rich Low_complexity Low_complexity 1 32 0 501 17 0 0 chr6 154834798 154834856 -34444698 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 1653 172 0 13 chr6 154834866 154835169 -34444385 - AluJb SINE Alu -13 299 1 180 0 0 0 chr6 154835526 154835546 -34444008 + (GA)n Simple_repeat Simple_repeat 2 21 0 348 373 78 24 chr6 154836226 154836521 -34443033 - L3 LINE CR1 -3 1574 1264 307 328 90 17 chr6 154836631 154836808 -34442746 - MIR SINE MIR -18 244 55 246 192 0 0 chr6 154837142 154837194 -34442360 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 2107 120 0 0 chr6 154837210 154837494 -34442060 - AluSc SINE Alu -25 284 1 1266 197 45 10 chr6 154837501 154837790 -34441764 - Charlie4a DNA MER1_type -191 317 19 446 342 213 16 chr6 154837810 154838444 -34441110 - L3 LINE CR1 -629 948 190 236 250 0 0 chr6 154838555 154838603 -34440951 + CT-rich Low_complexity Low_complexity 2 49 0 2446 126 83 2 chr6 154839222 154839618 -34439936 + MSTA LTR MaLR 1 428 0 2323 50 18 0 chr6 154840373 154840674 -34438880 + AluSp SINE Alu 1 306 0 2355 181 208 86 chr6 154841299 154842208 -34437346 - LTR28 LTR ERV1 0 1020 1 2407 87 0 3 chr6 154842591 154842900 -34436654 - AluSc SINE Alu -1 308 1 219 373 101 30 chr6 154845314 154845483 -34434071 + MER5A DNA MER1_type 9 189 0 305 239 115 26 chr6 154846678 154846791 -34432763 + MIR SINE MIR 43 165 -97 619 296 130 5 chr6 154848289 154848512 -34431042 - MIR SINE MIR -4 258 8 22 0 0 0 chr6 154848528 154848550 -34431004 + AT_rich Low_complexity Low_complexity 1 22 0 1483 189 23 78 chr6 154849365 154849761 -34429793 - MLT1A2 LTR MaLR 0 374 1 29 28 0 0 chr6 154850780 154850816 -34428738 + AT_rich Low_complexity Low_complexity 1 36 0 269 283 43 36 chr6 154853661 154853958 -34425596 + L1MC/D LINE L1 5209 5514 -755 226 180 82 16 chr6 154854159 154854220 -34425334 + L1P4 LINE L1 5772 5836 -327 2177 101 31 0 chr6 154854284 154854572 -34424982 + AluSp SINE Alu 1 297 -16 1565 249 60 34 chr6 154855613 154855952 -34423602 + LTR40a LTR ERVL 6 364 -155 2248 94 6 28 chr6 154855952 154856270 -34423284 + AluY SINE Alu 1 311 0 1565 249 60 34 chr6 154856270 154856429 -34423125 + LTR40a LTR ERVL 364 517 -2 269 238 16 98 chr6 154857163 154857285 -34422269 + HsTC2 DNA Tc2 4 115 -1783 244 267 128 58 chr6 154857538 154857710 -34421844 - MIR SINE MIR -73 189 6 1338 215 116 42 chr6 154857777 154858686 -34420868 - LTR28 LTR ERV1 0 1020 1 321 293 0 0 chr6 154858740 154858815 -34420739 - MIR SINE MIR -56 152 78 2215 81 50 3 chr6 154859305 154859602 -34419952 + AluY SINE Alu 1 311 0 26 30 0 0 chr6 154859760 154859793 -34419761 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr6 154860433 154860469 -34419085 + AT_rich Low_complexity Low_complexity 1 36 0 180 77 0 0 chr6 154860700 154860726 -34418828 + (TAA)n Simple_repeat Simple_repeat 2 27 0 293 263 11 11 chr6 154860803 154860898 -34418656 - MER110 LTR ERV1 0 491 397 452 239 194 45 chr6 154860944 154861258 -34418296 - MER110-int LTR ERV1 -1511 3136 2776 231 205 0 48 chr6 154861338 154861421 -34418133 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 5993 130 31 26 chr6 154861994 154863685 -34415869 - L1PA14 LINE L1 -2 6159 4471 722 123 44 18 chr6 154865116 154865230 -34414324 + THE1B LTR MaLR 1 117 -247 1313 121 8 76 chr6 154865326 154865381 -34414173 + THE1B LTR MaLR 133 190 -174 2458 78 0 0 chr6 154865381 154865687 -34413867 + AluY SINE Alu 1 306 -5 1313 121 8 76 chr6 154865687 154865880 -34413674 + THE1B LTR MaLR 190 364 0 1758 148 85 20 chr6 154866211 154866563 -34412991 + THE1C LTR MaLR 1 375 0 1477 236 16 5 chr6 154866987 154867355 -34412199 - MER110 LTR ERV1 -81 410 39 2675 88 13 8 chr6 154869835 154870208 -34409346 - THE1C LTR MaLR 0 375 1 432 247 145 12 chr6 154870664 154870830 -34408724 - MIR3 SINE MIR -5 203 16 2183 165 53 7 chr6 154870872 154871285 -34408269 + MSTB1 LTR MaLR 1 432 0 2426 70 0 0 chr6 154872755 154873054 -34406500 - AluY SINE Alu -12 299 1 21 57 0 0 chr6 154874035 154874070 -34405484 + AT_rich Low_complexity Low_complexity 1 35 0 225 94 0 0 chr6 154874402 154874434 -34405120 + (CTAA)n Simple_repeat Simple_repeat 1 32 0 1748 208 23 23 chr6 154874526 154874920 -34404634 - MSTD LTR MaLR -2 394 1 1413 82 106 0 chr6 154875263 154875471 -34404083 + MER30 DNA MER1_type 1 230 0 646 271 61 6 chr6 154876232 154876413 -34403141 + MER58A DNA MER1_type 2 192 -32 1935 76 24 4 chr6 154876490 154876741 -34402813 + AluY SINE Alu 41 296 -15 881 156 28 39 chr6 154876746 154876767 -34402787 + MER3 DNA MER1_type 27 45 -164 400 239 96 41 chr6 154876767 154876964 -34402590 - MER3 DNA MER1_type 0 209 2 550 177 18 0 chr6 154877018 154877131 -34402423 + MER3 DNA MER1_type 82 196 -13 680 257 13 0 chr6 154877151 154877303 -34402251 + MER5A DNA MER1_type 1 154 -35 312 168 0 33 chr6 154877304 154877428 -34402126 - MER5A DNA MER1_type 0 189 4 253 242 172 23 chr6 154877467 154877595 -34401959 + Charlie7 DNA MER1_type 45 191 -2421 1986 238 165 8 chr6 154877647 154878388 -34401166 - L1MC4 LINE L1 -1849 6193 5337 378 270 36 0 chr6 154878446 154878583 -34400971 + Charlie7 DNA MER1_type 378 519 -2093 1205 227 122 73 chr6 154878630 154879324 -34400230 + Charlie7 DNA MER1_type 1746 2479 -133 1401 190 82 4 chr6 154879324 154879593 -34399961 + AluJb SINE Alu 1 290 -12 1205 227 122 73 chr6 154879593 154879626 -34399928 + Charlie7 DNA MER1_type 2479 2509 -103 216 185 0 0 chr6 154879761 154879815 -34399739 + GA-rich Low_complexity Low_complexity 1 54 0 258 95 0 0 chr6 154882020 154882062 -34397492 + (CA)n Simple_repeat Simple_repeat 2 43 0 1603 161 28 7 chr6 154882631 154882916 -34396638 - AluSx SINE Alu -9 303 13 246 192 0 0 chr6 154885480 154885532 -34394022 + (CA)n Simple_repeat Simple_repeat 2 53 0 831 242 9 47 chr6 154885648 154885686 -34393868 + MIR SINE MIR 32 70 -192 1625 201 27 95 chr6 154885686 154886130 -34393424 + MLT2D LTR ERVL 1 414 0 831 242 9 47 chr6 154886130 154886302 -34393252 + MIR SINE MIR 70 234 -28 29 47 0 0 chr6 154886374 154886417 -34393137 + AT_rich Low_complexity Low_complexity 1 43 0 424 247 24 54 chr6 154887482 154887648 -34391906 - L2 LINE L2 -1 3312 3152 353 22 22 0 chr6 154887973 154888019 -34391535 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 1105 102 0 11 chr6 154888019 154888196 -34391358 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 1877 107 37 18 chr6 154888196 154888468 -34391086 - AluSg1 SINE Alu -32 277 1 2343 102 0 0 chr6 154888561 154888865 -34390689 - AluSx SINE Alu -8 304 1 24 0 0 0 chr6 154889065 154889089 -34390465 + AT_rich Low_complexity Low_complexity 1 24 0 318 341 77 55 chr6 154890530 154890712 -34388842 - MIR3 SINE MIR -21 187 2 275 315 18 36 chr6 154890766 154890877 -34388677 + L2 LINE L2 3204 3312 -1 185 288 68 0 chr6 154891780 154891839 -34387715 - MIR SINE MIR -94 168 106 2373 62 3 7 chr6 154892738 154893045 -34386509 + AluY SINE Alu 1 306 -5 454 312 50 27 chr6 154893104 154893325 -34386229 - MIR SINE MIR -13 249 24 3121 181 103 23 chr6 154896726 154897412 -34382142 + LTR48 LTR ERV1 1 741 -46 238 387 57 16 chr6 154897506 154897630 -34381924 - L2 LINE L2 -25 3247 3119 537 309 114 0 chr6 154897838 154898136 -34381418 + MER46C DNA MER2_type 2 333 -5 951 90 37 0 chr6 154898140 154898274 -34381280 + AluSq SINE Alu 146 284 -29 208 0 0 59 chr6 154898277 154898311 -34381243 + (CAA)n Simple_repeat Simple_repeat 2 33 0 212 167 0 0 chr6 154898713 154898755 -34380799 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 658 240 29 49 chr6 154898842 154899046 -34380508 - MIR SINE MIR 0 262 63 204 288 0 45 chr6 154899097 154899163 -34380391 + L2 LINE L2 3241 3303 -10 2019 95 0 4 chr6 154899251 154899524 -34380030 - AluY SINE Alu 0 311 40 2260 99 0 3 chr6 154900096 154900390 -34379164 - AluSc SINE Alu -16 293 1 2427 68 0 0 chr6 154900919 154901215 -34378339 - AluY SINE Alu -15 296 1 27 29 0 0 chr6 154901364 154901398 -34378156 + AT_rich Low_complexity Low_complexity 1 34 0 320 279 109 0 chr6 154903955 154904102 -34375452 - MER103 DNA DNA 0 166 4 2669 180 37 108 chr6 154904666 154904871 -34374683 + MER44D DNA MER2_type 2 220 -2267 234 0 0 0 chr6 154904871 154904897 -34374657 + (CAA)n Simple_repeat Simple_repeat 1 26 0 2669 180 37 108 chr6 154904897 154905478 -34374076 + MER44D DNA MER2_type 220 604 -1 189 0 0 0 chr6 154906906 154906927 -34372627 + (A)n Simple_repeat Simple_repeat 1 21 0 2071 120 3 10 chr6 154908045 154908346 -34371208 - AluSx SINE Alu -13 299 1 371 299 0 19 chr6 154908639 154908746 -34370808 + MLT1J LTR MaLR 105 209 -302 257 263 100 105 chr6 154909083 154909225 -34370329 + L3 LINE CR1 1352 1494 -83 2432 72 0 0 chr6 154909225 154909530 -34370024 - AluY SINE Alu -6 305 1 257 263 100 105 chr6 154909530 154909577 -34369977 + L3 LINE CR1 1494 1540 -37 420 256 94 11 chr6 154909789 154909969 -34369585 + L1ME1 LINE L1 4060 4254 -1892 4067 257 76 51 chr6 154910006 154910780 -34368774 + L1ME3A LINE L1 1461 2214 -4212 2406 74 0 3 chr6 154910780 154911092 -34368462 + AluY SINE Alu 1 311 0 4067 257 76 51 chr6 154911092 154913084 -34366470 + L1ME3A LINE L1 2214 4442 -1984 5892 182 25 14 chr6 154913089 154915164 -34364390 + L1PA15 LINE L1 4081 6161 -4 1309 230 82 7 chr6 154915293 154915697 -34363857 + L1ME1 LINE L1 5284 5717 -447 * 3707 234 138 13 chr6 154915692 154916679 -34362875 - L1MCb LINE L1 -2849 3715 2852 1933 161 132 8 chr6 154916679 154917058 -34362496 - MSTB LTR MaLR 0 426 1 3707 234 138 13 chr6 154917058 154917137 -34362417 - L1MCb LINE L1 -3712 2852 2784 213 65 0 0 chr6 154917137 154917168 -34362386 + (TA)n Simple_repeat Simple_repeat 1 31 0 2081 103 0 0 chr6 154917168 154917449 -34362105 - AluSg SINE Alu -29 281 1 3707 234 138 13 chr6 154917449 154919165 -34360389 - L1MCb LINE L1 -3779 2785 571 369 244 12 0 chr6 154919268 154919354 -34360200 - L1MCb LINE L1 -5481 564 478 525 262 38 22 chr6 154919364 154919547 -34360007 - L1MCb LINE L1 -5859 186 1 1219 264 124 12 chr6 154919571 154919991 -34359563 + L1ME1 LINE L1 5695 6161 -5 1832 133 0 21 chr6 154920045 154920330 -34359224 + AluSx SINE Alu 25 303 -9 916 295 79 25 chr6 154920331 154920895 -34358659 + L1ME3A LINE L1 4607 5225 -1201 2008 273 100 25 chr6 154921084 154922005 -34357549 + L1ME3A LINE L1 5453 6445 -5 199 217 117 33 chr6 154922488 154922548 -34357006 - L3 LINE CR1 -309 1268 1204 287 200 43 0 chr6 154922828 154922898 -34356656 - MLT1J2 LTR MaLR -29 421 349 2488 61 0 6 chr6 154922936 154923248 -34356306 + AluSq SINE Alu 3 312 -1 2144 57 0 0 chr6 154923248 154923508 -34356046 + AluY SINE Alu 33 294 -17 328 279 126 9 chr6 154924717 154924828 -34354726 - MIR SINE MIR -66 142 19 229 291 0 23 chr6 154924849 154924935 -34354619 + GA-rich Low_complexity Low_complexity 3 86 0 374 306 144 6 chr6 154924986 154925159 -34354395 - MIR SINE MIR -65 197 1 3009 122 18 26 chr6 154926406 154926897 -34352657 + LTR45B LTR ERV1 3 489 0 36 23 0 0 chr6 154927931 154927974 -34351580 + AT_rich Low_complexity Low_complexity 1 43 0 227 296 0 34 chr6 154929732 154929820 -34349734 + MIR SINE MIR 178 262 0 186 372 35 18 chr6 154929844 154929957 -34349597 - MIR3 SINE MIR -87 121 7 220 221 73 29 chr6 154929974 154930042 -34349512 - MIR SINE MIR -94 168 98 2168 164 22 0 chr6 154932388 154932755 -34346799 - MLT1B LTR MaLR 0 390 16 23 54 0 0 chr6 154932974 154933011 -34346543 + AT_rich Low_complexity Low_complexity 1 37 0 240 337 65 0 chr6 154933345 154933437 -34346117 - L2 LINE L2 -43 3270 3173 2993 82 17 0 chr6 154933500 154933914 -34345640 + L1PA10 LINE L1 5745 6165 -3 197 286 12 107 chr6 154933989 154934073 -34345481 - L2 LINE L2 -339 2975 2900 267 245 32 85 chr6 154934084 154934178 -34345376 - L2 LINE L2 0 3313 3225 227 373 59 0 chr6 154934278 154934380 -34345174 - L2 LINE L2 -186 3086 2979 195 329 73 12 chr6 154935427 154935509 -34344045 + L2 LINE L2 3208 3294 -19 604 178 191 7 chr6 154935659 154935811 -34343743 - MER5A DNA MER1_type -9 180 1 29 0 0 0 chr6 154936005 154936034 -34343520 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 154936472 154936493 -34343061 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr6 154936530 154936579 -34342975 + AT_rich Low_complexity Low_complexity 1 49 0 462 293 132 19 chr6 154936791 154937208 -34342346 + L1ME4a LINE L1 5633 6096 -25 246 193 0 0 chr6 154938183 154938240 -34341314 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 340 213 0 43 chr6 154938241 154938429 -34341125 + (TA)n Simple_repeat Simple_repeat 1 180 0 268 291 23 23 chr6 154938562 154938648 -34340906 - L3b LINE CR1 -126 1457 1372 207 333 21 0 chr6 154939383 154939476 -34340078 + CT-rich Low_complexity Low_complexity 5 99 0 1593 173 25 81 chr6 154939761 154940155 -34339399 + MLT1A2 LTR MaLR 3 374 0 1446 166 54 54 chr6 154940398 154940693 -34338861 - AluJo SINE Alu -17 295 1 415 319 83 6 chr6 154941124 154941293 -34338261 + MIR SINE MIR 60 241 -21 22 0 0 0 chr6 154942711 154942733 -34336821 + AT_rich Low_complexity Low_complexity 1 22 0 277 227 0 109 chr6 154943194 154943304 -34336250 + MIR SINE MIR 126 223 -39 1350 138 28 20 chr6 154943337 154943590 -34335964 - L1MC1 LINE L1 -6 6327 6073 1844 146 14 14 chr6 154944189 154944484 -34335070 + AluSx SINE Alu 1 295 -17 390 255 104 0 chr6 154944764 154944870 -34334684 - L2 LINE L2 0 3313 3197 207 139 0 0 chr6 154945112 154945148 -34334406 + (TG)n Simple_repeat Simple_repeat 1 36 0 412 288 15 8 chr6 154945840 154945972 -34333582 - MIR SINE MIR -110 152 20 25 0 0 0 chr6 154946108 154946133 -34333421 + AT_rich Low_complexity Low_complexity 1 25 0 216 225 0 0 chr6 154947493 154947533 -34332021 + L2 LINE L2 2865 2904 -368 282 83 0 0 chr6 154948890 154948926 -34330628 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 604 164 28 28 chr6 154948926 154949180 -34330374 + CT-rich Low_complexity Low_complexity 1 254 0 1934 208 82 12 chr6 154949209 154949633 -34329921 + MLT2B1 LTR ERVL 1 454 -66 2060 160 14 14 chr6 154949641 154950004 -34329550 - Tigger7 DNA MER2_type 0 2587 2225 580 235 0 0 chr6 154950009 154950128 -34329426 - Tigger7 DNA MER2_type -614 119 1 218 32 32 0 chr6 154950128 154950159 -34329395 + (TAA)n Simple_repeat Simple_repeat 1 32 0 660 238 12 18 chr6 154950163 154950331 -34329223 + MLT1A2-int LTR MaLR 86 252 -1483 761 208 32 7 chr6 154950335 154950489 -34329065 + MLT1A2 LTR MaLR 217 374 0 339 185 15 0 chr6 154950489 154950545 -34329009 - MER112 DNA MER1_type -203 57 1 1794 229 75 20 chr6 154951807 154952356 -34327198 - L1ME2 LINE L1 0 6164 5586 462 213 74 41 chr6 154952620 154952742 -34326812 + L2 LINE L2 3187 3312 -1 663 279 62 10 chr6 154952749 154952957 -34326597 - MIR SINE MIR -29 233 15 460 269 115 43 chr6 154956383 154956591 -34322963 + MIR SINE MIR 21 243 -19 1310 172 39 103 chr6 154957477 154957867 -34321687 - MLT1A1 LTR MaLR 0 365 1 278 281 23 78 chr6 154958051 154958179 -34321375 - MIR SINE MIR -122 140 20 348 324 68 53 chr6 154958502 154958709 -34320845 + MIR SINE MIR 23 232 -30 685 293 18 37 chr6 154959112 154959385 -34320169 + L3 LINE CR1 703 970 -607 1127 167 9 22 chr6 154960979 154961206 -34318348 + MER44D DNA MER2_type 6 499 -110 6474 153 12 4 chr6 154961316 154962980 -34316574 - L1P4 LINE L1 -339 5822 4144 1514 249 132 24 chr6 154962976 154963763 -34315791 - L1M4c LINE L1 -4833 1709 932 * 697 265 118 65 chr6 154964626 154965156 -34314398 + MLT1G1 LTR MaLR 1 595 0 2304 96 3 0 chr6 154965664 154965967 -34313587 - AluSp SINE Alu -9 304 1 4205 120 126 140 chr6 154967285 154968715 -34310839 - pTR5 LTR ERV1 0 2438 66 225 243 29 43 chr6 154969048 154969118 -34310436 + L2 LINE L2 3245 3313 0 23 0 0 0 chr6 154969515 154969538 -34310016 + AT_rich Low_complexity Low_complexity 1 23 0 674 152 12 103 chr6 154971380 154971545 -34308009 + MLT2B1 LTR ERVL 371 520 0 278 267 40 50 chr6 154971549 154971650 -34307904 - L3b LINE CR1 -235 1348 1249 284 146 24 61 chr6 154972258 154972340 -34307214 - L1ME LINE L1 -250 5871 5793 382 346 65 56 chr6 154972398 154972736 -34306818 - L1ME LINE L1 -2176 5632 5292 211 189 19 19 chr6 154972762 154972815 -34306739 + (TA)n Simple_repeat Simple_repeat 2 54 0 358 254 56 8 chr6 154972852 154972978 -34306576 - L1ME4a LINE L1 -1 6120 5989 278 172 31 31 chr6 154973021 154973085 -34306469 - L1PA8A LINE L1 -262 5869 5806 211 231 13 13 chr6 154973126 154973204 -34306350 + (TA)n Simple_repeat Simple_repeat 2 79 0 186 238 113 100 chr6 154973392 154973472 -34306082 + L2 LINE L2 3150 3230 -42 2194 98 17 0 chr6 154973581 154973876 -34305678 + AluSx SINE Alu 1 300 -12 700 198 9 118 chr6 154974104 154974316 -34305238 + MLT1E1 LTR MaLR 1 189 -465 705 264 101 0 chr6 154974388 154974615 -34304939 + MLT1E1 LTR MaLR 405 654 0 2183 104 0 0 chr6 154974788 154975075 -34304479 + AluSx SINE Alu 1 287 -25 390 21 0 0 chr6 154975079 154975126 -34304428 + (CA)n Simple_repeat Simple_repeat 2 48 0 3666 133 67 59 chr6 154975130 154975847 -34303707 + L1PA16 LINE L1 5440 6162 -4 419 310 159 21 chr6 154976034 154976456 -34303098 + HAL1 LINE L1 1442 1921 -586 483 287 13 0 chr6 154976561 154976711 -34302843 + L1MC4a LINE L1 5754 5905 -1903 406 280 62 97 chr6 154976968 154977225 -34302329 + L2 LINE L2 3060 3307 -6 21 0 0 0 chr6 154977560 154977581 -34301973 + AT_rich Low_complexity Low_complexity 1 21 0 263 246 156 52 chr6 154978664 154978809 -34300745 - MIR SINE MIR -62 146 27 225 196 0 0 chr6 154979980 154980036 -34299518 + A-rich Low_complexity Low_complexity 1 56 0 219 114 0 0 chr6 154980569 154980604 -34298950 + (T)n Simple_repeat Simple_repeat 1 35 0 2040 95 54 7 chr6 154980616 154980911 -34298643 - AluSg SINE Alu -1 309 1 2417 58 0 32 chr6 154981349 154981661 -34297893 - AluY SINE Alu -9 302 1 262 383 40 25 chr6 154982405 154982606 -34296948 + L2 LINE L2 246 449 -2865 248 316 26 26 chr6 154982663 154982777 -34296777 - Charlie8 DNA MER1_type -2153 264 151 579 112 0 0 chr6 154982778 154982867 -34296687 + (TTCC)n Simple_repeat Simple_repeat 2 90 0 2144 112 16 0 chr6 154982867 154983170 -34296384 - AluY SINE Alu -1 310 3 273 200 24 24 chr6 154983173 154983258 -34296296 - Charlie8 DNA MER1_type -2261 156 72 859 239 19 24 chr6 154983537 154983750 -34295804 - MER58A DNA MER1_type -11 213 2 862 252 56 28 chr6 154983877 154984127 -34295427 - MIR SINE MIR 0 262 6 186 302 0 0 chr6 154984246 154984299 -34295255 + L2 LINE L2 2709 2761 -553 256 148 37 37 chr6 154984449 154984503 -34295051 + L2 LINE L2 3219 3272 0 1471 275 47 17 chr6 154984577 154985050 -34294504 - LTR16C LTR ERVL -1 490 4 21 57 0 0 chr6 154985708 154985743 -34293811 + AT_rich Low_complexity Low_complexity 1 35 0 283 359 16 27 chr6 154985944 154986128 -34293426 - L2 LINE L2 -831 2483 2302 194 143 20 0 chr6 154987095 154987144 -34292410 + CT-rich Low_complexity Low_complexity 1 50 0 1899 126 181 8 chr6 154987259 154987624 -34291930 - MSTA LTR MaLR 0 428 1 9079 156 10 32 chr6 154987624 154989238 -34290316 - MSTA-int LTR MaLR 0 1580 3 2036 141 128 10 chr6 154989240 154989623 -34289931 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr6 154990182 154990203 -34289351 + AT_rich Low_complexity Low_complexity 1 21 0 380 256 11 11 chr6 154990738 154990828 -34288726 - LTR16A1 LTR ERVL -6 451 362 2894 238 26 25 chr6 154991123 154991921 -34287633 - L1ME1 LINE L1 -5 6161 5363 * 3518 256 43 19 chr6 154991917 154993231 -34286323 - L1ME1 LINE L1 -2364 3782 2432 1026 191 34 5 chr6 154993231 154993435 -34286119 + MER6B DNA MER2_type 1 210 0 3518 256 43 19 chr6 154993435 154993482 -34286072 - L1ME1 LINE L1 -3714 2432 2388 2457 74 0 3 chr6 154993745 154994056 -34285498 + AluY SINE Alu 1 310 -1 757 250 138 13 chr6 154994333 154994565 -34284989 + MIR SINE MIR 2 262 0 1159 306 26 44 chr6 154997609 154998109 -34281445 + MLT1J LTR MaLR 5 495 -16 238 271 17 0 chr6 154998146 154998205 -34281349 - MER5A DNA MER1_type -6 183 124 1424 216 18 43 chr6 154998216 154998570 -34280984 + MLT2C1 LTR ERVL 2 363 -101 441 0 0 0 chr6 154998570 154998619 -34280935 + (CA)n Simple_repeat Simple_repeat 1 49 0 252 0 0 0 chr6 154998618 154998646 -34280908 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 1424 216 18 43 chr6 154998619 154998658 -34280896 + MLT2C1 LTR ERVL 363 424 -40 301 227 0 40 chr6 154998665 154998740 -34280814 + L1MC3 LINE L1 6588 6659 -1126 325 294 118 0 chr6 154998762 154998847 -34280707 - MER5A DNA MER1_type -84 105 11 346 367 20 0 chr6 154998874 154999021 -34280533 + MIR3 SINE MIR 40 189 -19 207 261 15 15 chr6 155000159 155000224 -34279330 + (TG)n Simple_repeat Simple_repeat 1 65 0 24 32 0 0 chr6 155000898 155000929 -34278625 + AT_rich Low_complexity Low_complexity 1 31 0 209 324 18 81 chr6 155002616 155002727 -34276827 - L2 LINE L2 -27 3245 3142 711 164 6 13 chr6 155005590 155005749 -34273805 + GA-rich Low_complexity Low_complexity 3 160 0 534 178 30 6 chr6 155006414 155006583 -34272971 + (CA)n Simple_repeat Simple_repeat 2 174 0 766 274 91 26 chr6 155008004 155008468 -34271086 - HAL1b LINE L1 -735 613 120 717 34 0 0 chr6 155008484 155008572 -34270982 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 239 273 27 3 chr6 155012014 155012105 -34267449 + MIR SINE MIR 63 154 -54 239 302 147 8 chr6 155012542 155012671 -34266883 - MIR SINE MIR 0 262 116 180 0 0 0 chr6 155013702 155013722 -34265832 + (T)n Simple_repeat Simple_repeat 1 20 0 231 289 127 56 chr6 155013780 155013922 -34265632 + L2 LINE L2 2939 3090 -182 362 260 216 19 chr6 155014116 155014324 -34265230 + LTR37B LTR ERV1 198 446 -22 290 269 60 67 chr6 155014364 155014498 -34265056 + L2 LINE L2 3179 3311 -2 222 214 0 0 chr6 155015095 155015137 -34264417 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 981 230 36 27 chr6 155015536 155015758 -34263796 - MER58A DNA MER1_type 0 224 1 2434 68 0 3 chr6 155016152 155016448 -34263106 - AluY SINE Alu -16 295 1 366 313 153 0 chr6 155017259 155017435 -34262119 - MIR SINE MIR -12 250 48 292 308 15 30 chr6 155017849 155017964 -34261590 - MER5A DNA MER1_type -4 174 59 2210 107 3 13 chr6 155019351 155019651 -34259903 - AluSg SINE Alu -13 297 1 2137 224 26 19 chr6 155019670 155020134 -34259420 - MLT1C LTR MaLR 0 467 1 337 325 42 0 chr6 155020238 155020358 -34259196 - MIR SINE MIR -50 212 88 322 336 72 18 chr6 155020365 155020588 -34258966 + L2 LINE L2 3005 3239 -74 265 191 0 0 chr6 155020776 155020818 -34258736 - L2 LINE L2 -92 3221 3180 219 288 0 14 chr6 155021147 155021220 -34258334 + L3 LINE CR1 1388 1459 -118 722 314 57 20 chr6 155021491 155021858 -34257696 + L2 LINE L2 2657 3048 -265 199 93 47 0 chr6 155023021 155023064 -34256490 + (TA)n Simple_repeat Simple_repeat 1 45 0 304 213 8 98 chr6 155023068 155023190 -34256364 + L1MC4 LINE L1 6614 6724 -1318 2201 98 3 20 chr6 155023570 155023875 -34255679 + AluSx SINE Alu 1 300 -12 804 170 0 54 chr6 155023875 155024022 -34255532 + AluJo/FRAM SINE Alu 134 272 -40 366 23 0 0 chr6 155024022 155024065 -34255489 + (TC)n Simple_repeat Simple_repeat 2 44 0 375 203 0 0 chr6 155024065 155024144 -34255410 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 517 327 8 40 chr6 155026060 155026308 -34253246 - MIR SINE MIR -11 251 12 690 192 40 8 chr6 155026424 155026549 -34253005 - FLAM_A SINE Alu -2 131 3 1957 138 3 40 chr6 155028264 155028589 -34250965 + MER44D DNA MER2_type 27 609 0 192 97 0 0 chr6 155028968 155028999 -34250555 + (TG)n Simple_repeat Simple_repeat 2 32 0 223 309 32 63 chr6 155030109 155030235 -34249319 - L2 LINE L2 0 3272 3151 27 29 0 0 chr6 155031199 155031233 -34248321 + AT_rich Low_complexity Low_complexity 1 34 0 269 293 38 19 chr6 155031882 155031988 -34247566 - MIR SINE MIR -43 219 112 288 229 49 0 chr6 155032214 155032275 -34247279 + L2 LINE L2 3250 3313 0 475 217 11 0 chr6 155032407 155032499 -34247055 + MER5A DNA MER1_type 13 105 -84 526 294 22 33 chr6 155032576 155032756 -34246798 + MER5B DNA MER1_type 1 178 0 2272 102 3 3 chr6 155033128 155033431 -34246123 - AluSx SINE Alu -9 303 1 1117 116 40 0 chr6 155033578 155033776 -34245778 - L1P LINE L1 -837 5309 5104 2070 84 7 11 chr6 155033776 155034063 -34245491 + L1PA14 LINE L1 5710 5995 -166 3181 145 19 0 chr6 155034164 155034641 -34244913 + THE1B-int LTR MaLR 1095 1580 0 2203 141 35 46 chr6 155034641 155034937 -34244617 + THE1B LTR MaLR 1 294 -70 2254 107 0 0 chr6 155034937 155035227 -34244327 - AluY SINE Alu -21 290 1 2203 141 35 46 chr6 155035227 155035298 -34244256 + THE1B LTR MaLR 294 364 0 4661 210 63 17 chr6 155035308 155036167 -34243387 - L1 LINE L1 -857 5289 4366 1913 95 91 0 chr6 155036167 155036430 -34243124 - AluY SINE Alu -24 287 1 4661 210 63 17 chr6 155036430 155036686 -34242868 - L1 LINE L1 -1780 4366 4123 * 5617 216 79 29 chr6 155036681 155037076 -34242478 + L1M1 LINE L1 2917 3291 -4274 1999 191 24 0 chr6 155037076 155037412 -34242142 - MER7A DNA MER2_type -1 345 4 5617 216 79 29 chr6 155037412 155038660 -34240894 + L1M1 LINE L1 3291 4691 -2874 2003 94 25 0 chr6 155038660 155038970 -34240584 + AluY SINE Alu 1 317 0 5617 216 79 29 chr6 155038970 155039407 -34240147 + L1M1 LINE L1 4691 5104 -2461 14623 136 28 15 chr6 155039530 155041877 -34237677 + Tigger1 DNA MER2_type 1 2377 -41 296 163 0 0 chr6 155042094 155042137 -34237417 + Tigger1 DNA MER2_type 2375 2417 -1 2220 248 58 42 chr6 155042295 155043023 -34236531 + L1M2 LINE L1 2 1126 -5722 4094 86 17 0 chr6 155043027 155043553 -34236001 + L1PA10 LINE L1 5629 6163 -5 201 167 24 0 chr6 155044914 155044956 -34234598 + (TG)n Simple_repeat Simple_repeat 2 44 0 1942 128 11 3 chr6 155044959 155045290 -34234264 - AluSx SINE Alu 0 333 1 2030 142 3 0 chr6 155051495 155051790 -34227764 - AluSq SINE Alu -17 296 1 2198 110 3 10 chr6 155054171 155054471 -34225083 - AluSx SINE Alu -14 298 1 21 36 0 0 chr6 155055499 155055527 -34224027 + AT_rich Low_complexity Low_complexity 1 28 0 2218 104 0 22 chr6 155055614 155055931 -34223623 - AluY SINE Alu -1 310 1 2311 75 3 28 chr6 155057355 155057674 -34221880 + AluY SINE Alu 1 311 0 211 256 256 22 chr6 155058040 155058177 -34221377 + MIR SINE MIR 21 189 -73 2231 101 10 7 chr6 155058303 155058609 -34220945 + AluSq SINE Alu 1 307 -6 383 306 78 17 chr6 155059149 155059381 -34220173 - MER41B LTR ERV1 -209 426 181 535 108 0 0 chr6 155060741 155060815 -34218739 - MLT1B LTR MaLR 0 390 317 2972 18 0 0 chr6 155060833 155061174 -34218380 - L1PA3 LINE L1 0 6155 5815 397 0 0 0 chr6 155061174 155061219 -34218335 + L1PA3 LINE L1 5770 5814 -341 1726 175 12 15 chr6 155061219 155061551 -34218003 - MLT1B LTR MaLR -59 331 1 2211 114 0 10 chr6 155061605 155061913 -34217641 + AluSq SINE Alu 1 305 -8 468 0 0 0 chr6 155062258 155062310 -34217244 + (TA)n Simple_repeat Simple_repeat 2 53 0 3137 132 31 19 chr6 155063215 155063327 -34216227 - L1MA8 LINE L1 -172 6119 6008 1613 264 100 18 chr6 155063327 155063979 -34215575 - L1PA8A LINE L1 -123 6008 5304 1098 173 235 12 chr6 155064338 155064662 -34214892 + MSTD LTR MaLR 1 396 0 2282 190 7 17 chr6 155064715 155065131 -34214423 - LOR1b LTR ERV1 0 461 50 297 323 10 50 chr6 155065192 155065291 -34214263 - L2 LINE L2 -42 3230 3136 2424 89 0 0 chr6 155065533 155065835 -34213719 + AluSg SINE Alu 1 302 -8 1818 246 105 40 chr6 155065835 155066493 -34213061 + L1ME1 LINE L1 5462 6162 -4 206 143 61 0 chr6 155066506 155066555 -34212999 + (TA)n Simple_repeat Simple_repeat 2 53 0 2331 58 24 14 chr6 155066590 155066882 -34212672 - AluY SINE Alu -16 295 1 253 346 94 24 chr6 155067156 155067283 -34212271 - L2 LINE L2 0 3272 3137 2448 74 0 3 chr6 155067799 155068098 -34211456 + AluY SINE Alu 1 298 -13 2045 120 41 0 chr6 155069558 155069850 -34209704 + AluSp SINE Alu 3 306 -7 485 273 165 6 chr6 155069977 155070153 -34209401 + MIR SINE MIR 59 262 0 1800 195 14 11 chr6 155070331 155070695 -34208859 - MLT1A1 LTR MaLR 0 365 1 259 138 0 69 chr6 155071013 155071071 -34208483 + L1MB7 LINE L1 6130 6183 -1 5653 123 20 3 chr6 155071328 155072174 -34207380 - Tigger1 DNA MER2_type -1554 864 5 2257 107 10 0 chr6 155072175 155072484 -34207070 + AluSp SINE Alu 1 312 -1 1307 250 20 51 chr6 155072484 155073032 -34206522 + L1M4 LINE L1 3099 3629 -2517 21 0 0 0 chr6 155073788 155073809 -34205745 + AT_rich Low_complexity Low_complexity 1 21 0 2134 112 0 7 chr6 155075064 155075368 -34204186 - AluSx SINE Alu -10 302 1 2247 87 19 22 chr6 155075601 155075912 -34203642 + AluY SINE Alu 1 310 -1 2227 111 0 0 chr6 155076436 155076734 -34202820 - AluSg SINE Alu -12 298 1 1589 244 41 22 chr6 155076735 155077199 -34202355 - L1M4 LINE L1 -816 5330 4858 751 234 5 32 chr6 155077580 155077768 -34201786 - MER5A DNA MER1_type -1 188 6 202 377 0 0 chr6 155077787 155077864 -34201690 + MIR SINE MIR 37 113 -149 374 237 31 10 chr6 155077928 155078025 -34201529 - MER5A DNA MER1_type -77 112 14 23 33 0 0 chr6 155078066 155078096 -34201458 + AT_rich Low_complexity Low_complexity 1 30 0 1370 163 28 110 chr6 155079074 155079400 -34200154 + AluJo SINE Alu 1 299 -13 220 211 19 0 chr6 155081107 155081159 -34198395 + CT-rich Low_complexity Low_complexity 2 54 0 21 36 0 0 chr6 155082756 155082784 -34196770 + AT_rich Low_complexity Low_complexity 1 28 0 457 304 16 0 chr6 155083555 155083680 -34195874 + MIR3 SINE MIR 82 208 0 191 328 172 17 chr6 155083970 155084086 -34195468 - MIR SINE MIR -71 191 58 21 0 0 0 chr6 155084951 155084972 -34194582 + AT_rich Low_complexity Low_complexity 1 21 0 2139 177 16 3 chr6 155086596 155086981 -34192573 + MLT1B LTR MaLR 1 390 0 228 215 31 15 chr6 155088785 155088850 -34190704 + MIR3 SINE MIR 143 208 0 22 0 0 0 chr6 155089285 155089307 -34190247 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr6 155090802 155090841 -34188713 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 155091134 155091155 -34188399 + AT_rich Low_complexity Low_complexity 1 21 0 253 89 18 18 chr6 155092069 155092125 -34187429 - L1MA4A LINE L1 -2 6301 6246 2083 130 7 0 chr6 155092320 155092628 -34186926 + AluSx SINE Alu 1 310 -2 1290 243 38 138 chr6 155093231 155093337 -34186217 - MER69B DNA AcHobo -1315 1211 1096 2044 112 6 43 chr6 155093337 155093659 -34185895 - AluSx SINE Alu -2 310 1 1290 243 38 138 chr6 155093659 155094590 -34184964 - MER69B DNA AcHobo -1430 1096 278 1026 261 95 47 chr6 155094594 155095166 -34184388 - MLT1H LTR MaLR -4 591 1 798 293 60 0 chr6 155095166 155095415 -34184139 - MER69B DNA AcHobo -945 281 18 497 351 67 33 chr6 155095465 155095855 -34183699 + L2 LINE L2 2464 2866 -448 328 259 138 26 chr6 155095872 155095988 -34183566 + L2 LINE L2 3185 3313 0 414 321 49 61 chr6 155098060 155098306 -34181248 + MIR SINE MIR 14 256 -6 252 235 126 8 chr6 155098986 155099105 -34180449 + MIR SINE MIR 66 198 -64 274 265 39 39 chr6 155099131 155099233 -34180321 + MLT1H1 LTR MaLR 1 102 -440 408 236 55 156 chr6 155099415 155099853 -34179701 + MLT1H1 LTR MaLR 157 555 0 241 323 128 71 chr6 155100666 155101661 -34177893 - L2 LINE L2 -453 2861 1811 2286 109 0 3 chr6 155102178 155102490 -34177064 - AluY SINE Alu 0 311 1 229 283 65 22 chr6 155102848 155102940 -34176614 - MIR SINE MIR -14 248 153 921 224 104 20 chr6 155103910 155104209 -34175345 + MER33 DNA MER1_type 1 324 0 2213 97 0 13 chr6 155105030 155105329 -34174225 - AluSc SINE Alu -14 295 1 334 349 9 4 chr6 155105533 155105762 -34173792 - L1ME4a LINE L1 -286 5835 5606 23 33 0 0 chr6 155106078 155106108 -34173446 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr6 155106556 155106592 -34172962 + AT_rich Low_complexity Low_complexity 1 36 0 356 298 127 20 chr6 155106870 155107122 -34172432 - L1ME4a LINE L1 -1850 4296 4018 383 147 0 13 chr6 155107207 155107282 -34172272 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 953 127 18 30 chr6 155107434 155107599 -34171955 - L1MC1 LINE L1 0 6333 6171 2474 180 21 77 chr6 155107628 155108211 -34171343 - L1MCa LINE L1 -5662 764 215 220 173 58 0 chr6 155108542 155108594 -34170960 + (TTG)n Simple_repeat Simple_repeat 3 57 0 21 0 0 0 chr6 155109593 155109614 -34169940 + AT_rich Low_complexity Low_complexity 1 21 0 587 270 35 18 chr6 155111289 155111508 -34168046 + MIR SINE MIR 3 224 -38 250 281 168 20 chr6 155112739 155112935 -34166619 - L1ME LINE L1 -367 5803 5579 985 197 57 31 chr6 155113009 155113237 -34166317 + MLT1A2 LTR MaLR 130 363 -11 256 241 87 49 chr6 155113245 155113475 -34166079 - L1ME LINE L1 -619 5551 5312 264 325 60 0 chr6 155113529 155113763 -34165791 - L1ME LINE L1 -932 5214 4967 306 291 170 63 chr6 155113979 155114343 -34165211 - L1ME LINE L1 -1492 4654 4252 469 331 89 37 chr6 155114454 155114835 -34164719 - L1ME LINE L1 -2061 4085 3685 929 228 97 35 chr6 155115105 155115485 -34164069 - MSTB2 LTR MaLR -3 438 1 2281 305 35 34 chr6 155115574 155116528 -34163026 + MER69 DNA AcHobo 187 1141 -1385 36529 91 10 12 chr6 155116652 155122812 -34156742 + L1PA6 LINE L1 11 6148 -6 407 274 107 0 chr6 155122837 155123005 -34156549 + MER69 DNA AcHobo 2126 2311 -215 1750 255 221 39 chr6 155123171 155124061 -34155493 - L1MC4 LINE L1 -95 7713 6734 2025 121 30 7 chr6 155124061 155124366 -34155188 - AluSx SINE Alu 0 312 1 1750 255 221 39 chr6 155124366 155124457 -34155097 - L1MC4 LINE L1 -1074 6734 6661 327 167 0 0 chr6 155124596 155124656 -34154898 + MER69 DNA AcHobo 2451 2510 -16 225 268 49 12 chr6 155124698 155124780 -34154774 + L2 LINE L2 3168 3252 -61 21 36 0 0 chr6 155125057 155125085 -34154469 + AT_rich Low_complexity Low_complexity 1 28 0 271 397 40 0 chr6 155125363 155125489 -34154065 - L2 LINE L2 -4 3268 3138 25 0 0 0 chr6 155126008 155126033 -34153521 + AT_rich Low_complexity Low_complexity 1 25 0 293 326 23 12 chr6 155126501 155126587 -34152967 - L2 LINE L2 -50 3222 3136 251 104 21 0 chr6 155126677 155126725 -34152829 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr6 155126803 155126825 -34152729 + AT_rich Low_complexity Low_complexity 1 22 0 195 352 0 0 chr6 155127462 155127516 -34152038 - L2 LINE L2 -4 3268 3215 337 282 29 96 chr6 155127585 155127794 -34151760 - MIR SINE MIR 0 262 68 999 172 76 48 chr6 155127837 155128087 -34151467 - L1MD3 LINE L1 -1 7994 7738 315 332 158 43 chr6 155128354 155129213 -34150341 - L2 LINE L2 -457 2857 1900 1333 254 85 36 chr6 155129228 155129756 -34149798 + L1MCb LINE L1 40 593 -5452 21 21 0 64 chr6 155129756 155129784 -34149770 + AT_rich Low_complexity Low_complexity 1 26 -18 2775 19 0 0 chr6 155129784 155130094 -34149460 + AluYb8 SINE Alu 1 310 -8 21 21 0 64 chr6 155130094 155130112 -34149442 + AT_rich Low_complexity Low_complexity 26 44 0 756 275 21 5 chr6 155130672 155130861 -34148693 + L1M2 LINE L1 1075 1266 -5583 381 267 8 46 chr6 155130902 155131033 -34148521 + L1 LINE L1 3971 4096 -2050 * 12931 217 59 11 chr6 155131027 155134480 -34145074 + L1M2 LINE L1 1280 5016 -1865 414 0 0 0 chr6 155134480 155134526 -34145028 + (TA)n Simple_repeat Simple_repeat 1 46 0 12931 217 59 11 chr6 155134526 155135695 -34143859 + L1M2 LINE L1 5016 6128 -753 320 250 0 0 chr6 155135686 155135774 -34143780 + L1M4 LINE L1 2944 3031 -3115 * 517 287 77 33 chr6 155136272 155136572 -34142982 + L2 LINE L2 2450 2762 -552 6935 162 27 24 chr6 155136578 155138880 -34140674 + L1MA3 LINE L1 3997 6305 0 386 342 68 18 chr6 155139535 155139772 -34139782 - MIR SINE MIR -3 259 13 2346 89 0 3 chr6 155139940 155140253 -34139301 - AluSq SINE Alu -1 312 1 2356 42 0 17 chr6 155142455 155142788 -34136766 + AluY SINE Alu 1 328 0 21 57 0 0 chr6 155142796 155142831 -34136723 + AT_rich Low_complexity Low_complexity 1 35 0 227 224 78 52 chr6 155143140 155143256 -34136298 + L1ME4a LINE L1 5808 5926 -195 226 179 90 0 chr6 155143329 155143407 -34136147 + L1ME4a LINE L1 6031 6115 -6 984 135 92 39 chr6 155143436 155143643 -34135911 + MER20 DNA MER1_type 2 219 0 243 263 44 53 chr6 155143657 155143771 -34135783 + L1ME LINE L1 5737 5849 -272 304 143 29 0 chr6 155144110 155144180 -34135374 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 1318 232 154 2 chr6 155145275 155145736 -34133818 - L1MCa LINE L1 -3979 2585 2055 2063 254 50 60 chr6 155145746 155146573 -34132981 - L1MCa LINE L1 -5227 818 1 21 36 0 0 chr6 155147098 155147126 -34132428 + AT_rich Low_complexity Low_complexity 1 28 0 2330 181 149 22 chr6 155147483 155148026 -34131528 - LTR9 LTR ERV1 0 612 1 30 69 0 0 chr6 155148042 155148100 -34131454 + AT_rich Low_complexity Low_complexity 1 58 0 2918 250 63 29 chr6 155148421 155149639 -34129915 + L1M4 LINE L1 2683 3942 -2204 4606 138 10 31 chr6 155149687 155150598 -34128956 - pTR5 LTR ERV1 -800 1638 747 388 263 21 47 chr6 155150598 155150794 -34128760 - L1PA12 LINE L1 -5929 1652 1247 302 209 73 9 chr6 155150853 155150963 -34128591 + L1MA10 LINE L1 6217 6333 -1 2593 17 0 0 chr6 155151548 155151839 -34127715 - AluYa5 SINE Alu -2 309 19 24 0 0 0 chr6 155152976 155153000 -34126554 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr6 155154473 155154506 -34125048 + AT_rich Low_complexity Low_complexity 1 33 0 514 205 38 20 chr6 155154659 155154689 -34124865 - MLT1A2 LTR MaLR 0 388 360 1469 106 5 0 chr6 155154689 155154887 -34124667 + AluSp SINE Alu 99 297 -16 514 205 38 20 chr6 155154887 155154981 -34124573 - MLT1A2 LTR MaLR -28 360 263 1683 160 45 68 chr6 155155353 155155566 -34123988 - MLT1B LTR MaLR 0 390 189 240 35 0 0 chr6 155155566 155155595 -34123959 + (TG)n Simple_repeat Simple_repeat 2 30 0 1683 160 45 68 chr6 155155595 155155780 -34123774 - MLT1B LTR MaLR -201 189 1 1943 150 55 0 chr6 155156483 155156809 -34122745 + MER7A DNA MER2_type 2 343 -3 186 133 0 0 chr6 155157135 155157165 -34122389 + (T)n Simple_repeat Simple_repeat 1 30 0 197 340 131 26 chr6 155157537 155157690 -34121864 - MIR SINE MIR -93 169 1 2452 169 54 14 chr6 155158110 155158540 -34121014 + Tigger7 DNA MER2_type 1 412 -2075 4534 94 0 0 chr6 155158540 155159165 -34120389 + L1PA13 LINE L1 5539 6163 0 2452 169 54 14 chr6 155159165 155159193 -34120361 + Tigger7 DNA MER2_type 412 437 -2050 2015 108 0 0 chr6 155159193 155159461 -34120093 + AluSg SINE Alu 14 320 0 286 51 0 0 chr6 155159461 155159500 -34120054 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 2452 169 54 14 chr6 155159500 155159592 -34119962 + Tigger7 DNA MER2_type 437 2486 -1 1770 183 0 0 chr6 155159869 155160158 -34119396 - AluJb SINE Alu -23 289 1 471 150 125 0 chr6 155160533 155160613 -34118941 - 5S rRNA rRNA -31 90 1 2204 123 125 13 chr6 155160839 155161222 -34118332 - MSTA LTR MaLR 0 428 3 281 238 38 38 chr6 155161669 155161829 -34117725 + (TCTA)n Simple_repeat Simple_repeat 2 161 0 43 47 0 0 chr6 155163005 155163069 -34116485 + AT_rich Low_complexity Low_complexity 1 64 0 7016 38 0 2 chr6 155163427 155164312 -34115242 - L1P LINE L1 -2328 3818 2936 9387 31 7 0 chr6 155164313 155166207 -34113347 + L1PA3 LINE L1 4256 6155 0 32 75 0 0 chr6 155166475 155166542 -34113012 + AT_rich Low_complexity Low_complexity 1 67 0 510 314 69 0 chr6 155167349 155167537 -34112017 - MIR SINE MIR -55 207 7 3543 193 58 41 chr6 155167801 155168703 -34110851 - L1MB4 LINE L1 -6 6174 5258 1268 73 14 73 chr6 155168717 155168936 -34110618 + L1MA5A LINE L1 6089 6294 -3 407 196 0 0 chr6 155168947 155169039 -34110515 + L1M4 LINE L1 5152 5243 -903 741 318 53 4 chr6 155169099 155169344 -34110210 + MIR SINE MIR 6 262 0 180 0 0 0 chr6 155169631 155169651 -34109903 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 324 322 66 9 chr6 155170308 155170519 -34109035 - L1MDa LINE L1 -3069 3060 2838 294 290 58 26 chr6 155170771 155170926 -34108628 - L1MDa LINE L1 -3526 2603 2444 480 280 65 20 chr6 155171590 155171965 -34107589 - L1MDa LINE L1 -861 1629 1300 293 274 131 66 chr6 155172006 155172136 -34107418 - L1MDa LINE L1 -4864 1255 1135 1880 150 94 24 chr6 155172136 155172476 -34107078 - THE1B LTR MaLR 0 364 1 11705 98 2 4 chr6 155172476 155174059 -34105495 - THE1B-int LTR MaLR 0 1580 1 1740 138 86 78 chr6 155174059 155174249 -34105305 - THE1B LTR MaLR 0 364 177 2023 122 24 7 chr6 155174249 155174543 -34105011 - AluSx SINE Alu -11 301 3 1740 138 86 78 chr6 155174543 155174568 -34104986 - THE1B LTR MaLR -187 177 154 2341 80 0 29 chr6 155174568 155174880 -34104674 + AluY SINE Alu 1 303 -8 1740 138 86 78 chr6 155174880 155175024 -34104530 - THE1B LTR MaLR -210 154 1 293 274 131 66 chr6 155175024 155175165 -34104389 - L1MDa LINE L1 -4983 1136 964 419 295 91 62 chr6 155175288 155175529 -34104025 + L1ME3A LINE L1 5777 6024 -146 446 315 126 51 chr6 155175693 155176226 -34103328 - L1MDa LINE L1 -5223 896 324 1737 171 48 0 chr6 155176767 155177059 -34102495 + AluSx SINE Alu 1 306 -6 21 0 0 0 chr6 155178611 155178632 -34100922 + AT_rich Low_complexity Low_complexity 1 21 0 2010 142 7 0 chr6 155179346 155179359 -34100195 - AluSx SINE Alu -12 300 289 393 39 0 0 chr6 155179359 155179410 -34100144 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2010 142 7 0 chr6 155179410 155179692 -34099862 - AluSx SINE Alu -23 289 3 25 0 0 0 chr6 155179751 155179776 -34099778 + AT_rich Low_complexity Low_complexity 1 25 0 1297 171 104 49 chr6 155179900 155180187 -34099367 - AluJo SINE Alu -9 303 1 288 281 86 43 chr6 155180398 155180537 -34099017 - L2 LINE L2 -8 3305 3161 369 264 39 39 chr6 155180846 155180975 -34098579 - MER94 DNA DNA -5 129 1 1968 150 3 10 chr6 155181174 155181487 -34098067 + AluSp SINE Alu 1 311 -2 770 304 103 27 chr6 155181745 155182228 -34097326 - LTR33 LTR ERVL -1 520 1 241 337 70 64 chr6 155182864 155183051 -34096503 + MLT1K LTR MaLR 27 214 -374 651 200 0 0 chr6 155183730 155183840 -34095714 - MLT1A2 LTR MaLR -261 113 4 931 201 29 57 chr6 155183972 155184216 -34095338 + MLT1A2 LTR MaLR 138 374 0 21 0 0 0 chr6 155184760 155184781 -34094773 + AT_rich Low_complexity Low_complexity 1 21 0 458 335 13 6 chr6 155185499 155185657 -34093897 - L3 LINE CR1 -14 1563 1405 236 348 80 36 chr6 155185688 155185826 -34093728 + L2 LINE L2 3126 3269 -3 265 332 28 54 chr6 155186325 155186525 -34093029 + MIR3 SINE MIR 2 195 -64 10345 250 20 10 chr6 155186746 155189268 -34090286 + L1PA16 LINE L1 1354 3851 -2946 2018 124 69 23 chr6 155189268 155189616 -34089938 + THE1B LTR MaLR 1 364 0 10797 108 25 6 chr6 155189616 155191167 -34088387 + THE1B-int LTR MaLR 1 1580 0 1967 117 94 29 chr6 155191167 155191509 -34088045 + THE1B LTR MaLR 1 364 0 10345 250 20 10 chr6 155191509 155192698 -34086856 + L1PA16 LINE L1 3850 5129 -1668 3387 137 31 15 chr6 155192706 155193254 -34086300 - MER41-int LTR ERV1 -4310 1636 1080 1472 150 9 9 chr6 155193243 155193476 -34086078 - MER41-int LTR ERV1 -5311 635 403 * 690 139 8 16 chr6 155193450 155193572 -34085982 + MER41A-int LTR ERV1 720 840 -4377 * 425 211 73 9 chr6 155193575 155193684 -34085870 + MER41A-int LTR ERV1 1902 2017 -3929 * 2993 142 34 5 chr6 155193676 155194393 -34085161 + MER41A-int LTR ERV1 2163 2946 -3000 * 11258 113 44 25 chr6 155194380 155195544 -34084010 + MER41A-int LTR ERV1 2856 3997 -1949 1715 148 0 0 chr6 155195544 155195800 -34083754 - AluSg SINE Alu -3 307 52 11258 113 44 25 chr6 155195800 155196874 -34082680 + MER41A-int LTR ERV1 3997 5944 -2 3224 115 9 0 chr6 155196874 155197336 -34082218 + MER41A LTR ERV1 1 466 -88 4628 160 43 9 chr6 155197344 155199002 -34080552 + L1PA16 LINE L1 5131 6817 0 23 0 0 0 chr6 155199306 155199329 -34080225 + AT_rich Low_complexity Low_complexity 1 23 0 4078 187 18 46 chr6 155199426 155199773 -34079781 + L1MB5 LINE L1 4961 5316 -858 2061 125 10 33 chr6 155199773 155200078 -34079476 + AluSx SINE Alu 1 298 -14 4078 187 18 46 chr6 155200078 155200964 -34078590 + L1MB5 LINE L1 5316 6166 -8 22 0 0 0 chr6 155201789 155201811 -34077743 + AT_rich Low_complexity Low_complexity 1 22 0 320 180 0 0 chr6 155202040 155202101 -34077453 - MER116 DNA Mariner -7 73 13 290 344 104 59 chr6 155202332 155202707 -34076847 - MLT1K LTR MaLR -195 393 2 904 265 20 13 chr6 155202888 155203283 -34076271 - L1MD2 LINE L1 -16 6343 5897 2701 215 31 34 chr6 155203288 155204267 -34075287 - L1MD2 LINE L1 -13 6143 5127 364 213 0 0 chr6 155204267 155204347 -34075207 - L1MD2 LINE L1 -972 5174 5095 334 200 105 0 chr6 155204368 155204473 -34075081 + L1M4 LINE L1 4949 5064 -1082 23 33 0 0 chr6 155204508 155204538 -34075016 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 155205160 155205181 -34074373 + AT_rich Low_complexity Low_complexity 1 21 0 185 233 23 23 chr6 155207223 155207266 -34072288 - MIR SINE MIR -56 152 110 4050 130 47 45 chr6 155207611 155208393 -34071161 + LTR1 LTR ERV1 1 784 -1 181 192 233 14 chr6 155208394 155208467 -34071087 + MIR SINE MIR 74 162 -100 1815 158 82 15 chr6 155208635 155208977 -34070577 + MLT1A1 LTR MaLR 1 365 0 283 290 0 0 chr6 155209140 155209202 -34070352 - MIR SINE MIR -117 91 30 29 47 0 0 chr6 155209551 155209594 -34069960 + AT_rich Low_complexity Low_complexity 1 43 0 247 299 39 0 chr6 155210077 155210176 -34069378 - MIR SINE MIR -41 167 59 23 0 0 0 chr6 155210674 155210697 -34068857 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr6 155210862 155210890 -34068664 + AT_rich Low_complexity Low_complexity 1 28 0 289 276 63 47 chr6 155211037 155211164 -34068390 + MER5A DNA MER1_type 55 183 -6 2260 91 0 0 chr6 155212402 155212689 -34066865 + AluSx SINE Alu 1 287 -25 233 206 0 27 chr6 155213222 155213295 -34066259 + (TGGA)n Simple_repeat Simple_repeat 3 73 0 252 0 0 0 chr6 155213556 155213584 -34065970 + (TG)n Simple_repeat Simple_repeat 1 28 0 238 305 19 9 chr6 155214747 155214852 -34064702 - Charlie8 DNA MER1_type -2233 184 79 4458 195 24 27 chr6 155215219 155216606 -34062948 - L1MB5 LINE L1 -1 6671 5287 276 329 0 0 chr6 155216607 155216680 -34062874 - MER39 LTR ERV1 0 707 635 358 258 0 22 chr6 155216688 155216777 -34062777 - MER39 LTR ERV1 -616 91 5 917 271 8 0 chr6 155216778 155217025 -34062529 - L1MB5 LINE L1 -1355 5289 5041 332 301 41 8 chr6 155217175 155217298 -34062256 - L1MB5 LINE L1 -6066 476 350 4293 199 26 13 chr6 155217336 155218647 -34060907 - L1PB4 LINE L1 -7 6851 5517 4441 221 26 15 chr6 155218652 155220187 -34059367 - L1PB4 LINE L1 -3605 3243 1695 2380 309 23 92 chr6 155220176 155221699 -34057855 - L1PB4 LINE L1 -5420 1429 12 * 444 309 56 32 chr6 155221767 155222019 -34057535 - L1MB5 LINE L1 -6271 271 14 296 338 79 35 chr6 155222213 155222503 -34057051 - L3b LINE CR1 -133 1450 1148 2231 114 0 0 chr6 155222782 155223081 -34056473 - AluSx SINE Alu -12 300 2 771 325 72 11 chr6 155223448 155223824 -34055730 + LTR16B LTR ERVL 64 462 -2 195 310 113 0 chr6 155223936 155224007 -34055547 + MIR SINE MIR 102 180 -82 235 164 18 0 chr6 155224100 155224155 -34055399 + (TATAA)n Simple_repeat Simple_repeat 4 59 0 310 331 38 15 chr6 155224533 155224666 -34054888 + MIR3 SINE MIR 55 190 -18 2146 122 0 0 chr6 155224781 155225101 -34054453 - AluSq SINE Alu 0 320 1 442 280 7 33 chr6 155226797 155226947 -34052607 - MIR SINE MIR 0 262 117 255 376 17 17 chr6 155227792 155227909 -34051645 + MIR3 SINE MIR 87 203 -5 402 282 91 32 chr6 155228157 155228377 -34051177 + MLT1L LTR MaLR 379 611 -4 236 264 32 140 chr6 155229143 155229393 -34050161 - L3 LINE CR1 -16 1561 1339 461 319 60 46 chr6 155229395 155229680 -34049874 - L3 LINE CR1 -1055 522 234 839 263 28 12 chr6 155229998 155230245 -34049309 + MER63C DNA MER1_type 159 409 -521 1574 219 92 15 chr6 155230445 155230924 -34048630 + MER63C DNA MER1_type 415 930 0 530 287 67 56 chr6 155231086 155231281 -34048273 + MIR SINE MIR 65 261 -1 483 307 203 32 chr6 155231285 155231757 -34047797 - L2 LINE L2 -572 2742 2190 32033 101 15 54 chr6 155231765 155238162 -34041392 + L1PA7 LINE L1 12 6149 -5 302 185 87 54 chr6 155238281 155238373 -34041181 - MIR SINE MIR -109 153 59 324 240 0 0 chr6 155238585 155238706 -34040848 + GA-rich Low_complexity Low_complexity 1 121 0 197 254 127 0 chr6 155239702 155239765 -34039789 - MIR SINE MIR -117 145 75 21 57 0 0 chr6 155240381 155240416 -34039138 + AT_rich Low_complexity Low_complexity 1 35 0 976 265 53 52 chr6 155240811 155241256 -34038298 - L1ME LINE L1 -459 5983 5535 406 280 149 62 chr6 155241433 155242118 -34037436 - L1MCa LINE L1 -4501 1925 1172 36 0 0 0 chr6 155242277 155242313 -34037241 + AT_rich Low_complexity Low_complexity 1 36 0 1917 153 7 0 chr6 155242313 155242594 -34036960 - AluSx SINE Alu -24 288 6 21 57 0 0 chr6 155242604 155242639 -34036915 + AT_rich Low_complexity Low_complexity 1 35 0 543 275 31 59 chr6 155243174 155243396 -34036158 - MLT1E3 LTR MaLR -13 611 396 1151 301 26 3 chr6 155243416 155243765 -34035789 + LTR41 LTR ERVL 340 696 -77 2443 57 0 7 chr6 155243838 155244137 -34035417 + AluY SINE Alu 1 297 -14 1303 214 7 31 chr6 155244141 155244430 -34035124 - AluJo SINE Alu -30 282 1 236 234 0 0 chr6 155245039 155245086 -34034468 + L1ME LINE L1 5586 5632 -532 240 343 73 0 chr6 155245102 155245239 -34034315 + L1ME LINE L1 5713 5859 -311 2033 128 0 23 chr6 155245748 155246052 -34033502 - AluSx SINE Alu -15 297 1 357 24 0 0 chr6 155246976 155247018 -34032536 + (GA)n Simple_repeat Simple_repeat 1 42 0 184 396 73 10 chr6 155247044 155247140 -34032414 - MIR SINE MIR -90 118 17 222 353 78 18 chr6 155247141 155247308 -34032246 - L2 LINE L2 -578 2736 2560 593 154 4 225 chr6 155248421 155248661 -34030893 - MER8 DNA MER2_type -4 235 49 204 182 0 0 chr6 155248689 155248733 -34030821 + (TA)n Simple_repeat Simple_repeat 1 44 0 1943 169 21 71 chr6 155248759 155249179 -34030375 - MLT2C2 LTR ERVL -63 401 3 216 0 0 0 chr6 155249334 155249358 -34030196 + (T)n Simple_repeat Simple_repeat 1 24 0 246 192 0 0 chr6 155249810 155249862 -34029692 + A-rich Low_complexity Low_complexity 1 52 0 1117 45 0 15 chr6 155250157 155250291 -34029263 - AluY SINE Alu -179 132 1 258 410 17 0 chr6 155250588 155250761 -34028793 + ERVL LTR ERVL 1521 1696 -4068 277 221 39 26 chr6 155250977 155251054 -34028500 + ERVL LTR ERVL 1894 1971 -3793 1241 347 82 27 chr6 155251766 155252914 -34026640 + ERVL LTR ERVL 2978 4250 -1514 2327 104 0 0 chr6 155252914 155253222 -34026332 - AluSc SINE Alu -1 308 1 1241 347 82 27 chr6 155253222 155253417 -34026137 + ERVL LTR ERVL 4250 4433 -1331 411 38 0 0 chr6 155253437 155253490 -34026064 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 710 179 0 0 chr6 155253494 155253611 -34025943 - FLAM_C SINE Alu -20 123 7 386 316 55 71 chr6 155253692 155254002 -34025552 + ERVL LTR ERVL 4505 4809 -955 1869 171 119 16 chr6 155254496 155254881 -34024673 - MSTA LTR MaLR 0 428 4 309 283 65 0 chr6 155255311 155255403 -34024151 + LTR67 LTR ERVL 396 493 -64 257 278 0 0 chr6 155257361 155257415 -34022139 + polypyrimidine Low_complexity Low_complexity 3 56 0 31 68 0 0 chr6 155257775 155257834 -34021720 + AT_rich Low_complexity Low_complexity 1 59 0 512 16 0 16 chr6 155259411 155259472 -34020082 - LTR7 LTR ERV1 -2 448 389 3136 235 89 70 chr6 155259613 155260323 -34019231 + L1MDa LINE L1 2462 3157 -3383 1888 127 41 0 chr6 155260323 155260624 -34018930 + AluSg SINE Alu 1 312 0 3136 235 89 70 chr6 155260624 155261261 -34018293 + L1MDa LINE L1 3157 3781 -2759 2551 40 0 13 chr6 155261261 155261562 -34017992 + AluY SINE Alu 1 297 -14 3136 235 89 70 chr6 155261562 155261649 -34017905 + L1MDa LINE L1 3781 3865 -2675 398 52 0 17 chr6 155261649 155261707 -34017847 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 3136 235 89 70 chr6 155261707 155262898 -34016656 + L1MDa LINE L1 3865 5125 -1415 1685 159 25 0 chr6 155262898 155263174 -34016380 - AluJb SINE Alu -16 296 14 3136 235 89 70 chr6 155263174 155263396 -34016158 + L1MDa LINE L1 5125 5341 -1199 237 188 43 29 chr6 155263480 155263549 -34016005 + L1MDa LINE L1 5398 5467 -1073 * 260 267 91 39 chr6 155263541 155263730 -34015824 - L1M4 LINE L1 -2466 3680 3480 432 243 27 18 chr6 155264215 155264326 -34015228 - MIR SINE MIR -131 131 20 226 300 70 84 chr6 155264438 155264665 -34014889 - L2 LINE L2 -825 2489 2266 2738 78 95 5 chr6 155264856 155265267 -34014287 + LTR7 LTR ERV1 1 448 -2 18306 104 46 12 chr6 155265269 155268159 -34011395 + HERVH LTR ERV1 1 2987 -4726 724 172 41 0 chr6 155268153 155268298 -34011256 + HERVH LTR ERV1 3140 3290 -4423 * 3333 107 4 4 chr6 155268297 155268791 -34010763 + HERVH LTR ERV1 3500 3993 -3720 4253 133 22 1 chr6 155268793 155269442 -34010112 + HERVH LTR ERV1 4488 5149 -2564 1313 123 38 0 chr6 155269443 155269655 -34009899 + HERVH LTR ERV1 5600 5819 -1894 2405 82 48 19 chr6 155269655 155270034 -34009520 + HERVH LTR ERV1 7324 7713 0 2379 75 116 5 chr6 155270034 155270406 -34009148 + LTR7 LTR ERV1 1 413 -37 343 165 38 0 chr6 155270883 155270962 -34008592 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 29 28 0 0 chr6 155271020 155271056 -34008498 + AT_rich Low_complexity Low_complexity 1 36 0 33 25 0 0 chr6 155271692 155271732 -34007822 + AT_rich Low_complexity Low_complexity 1 40 0 498 230 45 51 chr6 155272324 155272502 -34007052 + LTR40c LTR ERVL 1 177 -288 1209 207 117 27 chr6 155272595 155272928 -34006626 + MLT1A2 LTR MaLR 1 363 -11 648 285 24 19 chr6 155272937 155273144 -34006410 + LTR40b LTR ERVL 254 461 -1 219 167 0 0 chr6 155273190 155273232 -34006322 + (ATG)n Simple_repeat Simple_repeat 1 42 0 234 268 98 12 chr6 155273364 155273446 -34006108 - L2 LINE L2 -583 2731 2643 365 311 39 20 chr6 155275406 155275660 -34003894 + L1ME4a LINE L1 5582 5840 -281 399 113 0 0 chr6 155276005 155276067 -34003487 + (TG)n Simple_repeat Simple_repeat 2 63 0 200 354 0 0 chr6 155276406 155276471 -34003083 + (CATATA)n Simple_repeat Simple_repeat 3 67 0 290 321 132 0 chr6 155277889 155277995 -34001559 - L3 LINE CR1 -897 680 561 188 240 20 40 chr6 155278029 155278079 -34001475 - L2 LINE L2 -12 3260 3212 356 356 56 26 chr6 155278081 155278314 -34001240 + MIR SINE MIR 7 246 -16 258 241 174 47 chr6 155278547 155278800 -34000754 - L1MC4a LINE L1 -1845 5963 5679 288 247 0 43 chr6 155278833 155278926 -34000628 + (CATATA)n Simple_repeat Simple_repeat 3 91 0 342 385 15 15 chr6 155278926 155279126 -34000428 - L1MC4a LINE L1 -2119 5689 5490 25 51 0 0 chr6 155279219 155279258 -34000296 + AT_rich Low_complexity Low_complexity 1 39 0 342 331 96 35 chr6 155279407 155279773 -33999781 - L1MC4a LINE L1 -1087 5059 4672 296 320 56 44 chr6 155279914 155280201 -33999353 - L1MC4a LINE L1 -1807 4339 4057 635 239 39 6 chr6 155280201 155280381 -33999173 - MER5A DNA MER1_type -1 188 3 296 320 56 44 chr6 155280381 155280662 -33998892 - L1MC4a LINE L1 -2089 4057 3764 1109 279 78 5 chr6 155280952 155281532 -33998022 + L1MC2 LINE L1 2861 3481 -2665 * 4617 228 46 24 chr6 155281525 155283103 -33996451 + L1MC2 LINE L1 3688 5354 -990 2023 117 55 0 chr6 155283103 155283394 -33996160 + AluSg SINE Alu 1 307 -3 4617 228 46 24 chr6 155283394 155284218 -33995336 + L1MC2 LINE L1 5354 6158 -186 2136 106 0 0 chr6 155284443 155284761 -33994793 + AluSq SINE Alu 1 318 0 414 279 8 16 chr6 155285922 155286044 -33993510 + MER63 DNA MER1_type 14 760 -76 666 229 7 0 chr6 155288485 155288516 -33991038 - FRAM SINE Alu -137 175 146 825 65 0 0 chr6 155288516 155288624 -33990930 + (TTCC)n Simple_repeat Simple_repeat 1 108 0 666 229 7 0 chr6 155288624 155288736 -33990818 - FRAM SINE Alu -166 146 31 300 70 0 0 chr6 155289022 155289065 -33990489 + (TG)n Simple_repeat Simple_repeat 1 43 0 1233 198 125 15 chr6 155290240 155290583 -33988971 - L1ME1 LINE L1 0 6166 5786 5880 221 154 23 chr6 155292081 155293715 -33985839 + L1MA4A LINE L1 1 1848 -5361 * 8189 200 47 13 chr6 155293707 155296250 -33983304 + L1MA4A LINE L1 2669 5300 -1908 513 138 62 0 chr6 155296250 155296395 -33983159 + (TA)n Simple_repeat Simple_repeat 1 154 0 1387 189 8 0 chr6 155296395 155296638 -33982916 - AluJb SINE Alu -21 291 47 5569 162 42 7 chr6 155296641 155298664 -33980890 + L1MA4A LINE L1 5277 7364 -1 32 86 0 0 chr6 155300058 155300139 -33979415 + AT_rich Low_complexity Low_complexity 1 81 0 1974 139 10 13 chr6 155301387 155301696 -33977858 - AluSg SINE Alu -2 308 1 343 288 108 45 chr6 155303086 155303308 -33976246 - MIR SINE MIR -21 241 6 1968 165 73 34 chr6 155303429 155303866 -33975688 + MER4B LTR ERV1 1 454 -156 1153 140 13 39 chr6 155303866 155304095 -33975459 + MER61C LTR ERV1 212 434 0 1077 143 0 0 chr6 155304095 155304256 -33975298 + MER4E LTR ERV1 619 779 0 2312 110 0 0 chr6 155304459 155304769 -33974785 + AluSg SINE Alu 1 310 0 1624 174 185 45 chr6 155305531 155306197 -33973357 - LTR1B LTR ERV1 -8 818 2 196 322 124 8 chr6 155306937 155307058 -33972496 + L2 LINE L2 3176 3310 -3 27 0 0 0 chr6 155307124 155307151 -33972403 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr6 155307292 155307326 -33972228 + AT_rich Low_complexity Low_complexity 1 34 0 289 320 72 0 chr6 155307511 155307636 -33971918 + MIR3 SINE MIR 32 165 -43 1749 175 0 14 chr6 155307835 155308132 -33971422 + AluJb SINE Alu 3 295 -17 21 0 0 0 chr6 155308264 155308285 -33971269 + AT_rich Low_complexity Low_complexity 1 21 0 1120 246 78 6 chr6 155308429 155308790 -33970764 + L1ME1 LINE L1 4902 5288 -858 1095 247 32 37 chr6 155308789 155309166 -33970388 + L1ME1 LINE L1 5787 6161 -5 * 362 312 32 61 chr6 155309626 155309873 -33969681 + L1ME LINE L1 308 547 -5572 425 315 77 53 chr6 155309882 155310451 -33969103 + L1ME LINE L1 673 1255 -4864 2211 119 9 0 chr6 155310560 155310888 -33968666 + HSMAR2 DNA Mariner 2 332 -970 1016 78 0 0 chr6 155310899 155311028 -33968526 - AluY SINE Alu -182 129 1 5283 154 19 29 chr6 155311029 155312018 -33967536 + HSMAR2 DNA Mariner 323 1301 -1 1061 88 0 0 chr6 155312498 155312638 -33966916 - AluSp/q SINE Alu 0 304 165 843 261 35 0 chr6 155312656 155312855 -33966699 + MIR SINE MIR 28 233 -29 331 261 74 120 chr6 155312940 155314086 -33965468 + L1ME LINE L1 3609 4701 -1428 1724 163 42 55 chr6 155314209 155314589 -33964965 - THE1C LTR MaLR 0 375 1 8710 147 17 58 chr6 155314590 155316234 -33963320 - THE1C-int LTR MaLR -1 1579 4 1741 128 63 84 chr6 155316237 155316620 -33962934 - THE1C LTR MaLR 0 375 1 195 183 0 42 chr6 155316627 155316698 -33962856 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 315 0 0 0 chr6 155316733 155316768 -33962786 + (TG)n Simple_repeat Simple_repeat 1 35 0 749 181 132 0 chr6 155317007 155317151 -33962403 - FRAM SINE Alu -14 162 1 372 285 81 19 chr6 155317184 155317415 -33962139 + L1ME LINE L1 5159 5410 -735 764 286 50 17 chr6 155317422 155317704 -33961850 + MLT1G LTR MaLR 10 298 -257 407 245 0 20 chr6 155317772 155317874 -33961680 + MLT1G LTR MaLR 491 590 0 285 318 119 13 chr6 155317883 155318194 -33961360 + L1ME LINE L1 5417 5760 -385 237 196 87 0 chr6 155318218 155318264 -33961290 + L2 LINE L2 3264 3313 0 407 370 115 12 chr6 155318572 155318980 -33960574 - L2 LINE L2 -563 2751 2302 247 304 98 0 chr6 155319406 155319498 -33960056 + L2 LINE L2 3213 3313 0 358 266 39 16 chr6 155321089 155321217 -33958337 + MER94 DNA DNA 4 134 0 28 29 0 0 chr6 155322026 155322061 -33957493 + AT_rich Low_complexity Low_complexity 1 35 0 491 298 83 41 chr6 155324652 155325075 -33954479 - MLT1I LTR MaLR -5 427 1 28 29 0 0 chr6 155325800 155325835 -33953719 + AT_rich Low_complexity Low_complexity 1 35 0 231 36 0 0 chr6 155326196 155326224 -33953330 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2883 242 86 32 chr6 155326297 155327038 -33952516 - MER21B LTR ERV1 -82 781 1 449 327 157 0 chr6 155327390 155327613 -33951941 - MIR SINE MIR 0 262 5 1475 169 28 10 chr6 155327748 155328038 -33951516 - L1PA13 LINE L1 0 6163 5869 225 315 161 7 chr6 155328068 155328211 -33951343 - L2 LINE L2 -938 2376 2212 637 244 15 9 chr6 155328454 155328617 -33950937 - MER52A LTR ERV1 -4 1225 340 712 218 14 198 chr6 155328625 155328918 -33950636 - LTR28 LTR ERV1 -840 180 1 21238 114 6 15 chr6 155328919 155331982 -33947572 - LTR28-int LTR ERV1 -3 7088 4052 1969 171 43 40 chr6 155331982 155332544 -33947010 - MLT2A2 LTR ERVL 0 554 1 40605 100 15 5 chr6 155332544 155338139 -33941415 - HERVL-A2 LTR ERVL 0 5654 1 1564 211 57 32 chr6 155338139 155338689 -33940865 - MLT2A2 LTR ERVL 0 554 1 15911 203 13 20 chr6 155338689 155341119 -33938435 - MER61D-int LTR ERV1 -417 2671 1332 4483 53 4 0 chr6 155341119 155341680 -33937874 - L1PA7 LINE L1 -3 6151 5589 15911 203 13 20 chr6 155341680 155343004 -33936550 - MER61D-int LTR ERV1 -1756 1332 1 544 241 50 53 chr6 155343105 155343325 -33936229 - MER61D LTR ERV1 -10 491 340 818 215 10 167 chr6 155343333 155343626 -33935928 - LTR28 LTR ERV1 -855 165 1 21 36 0 0 chr6 155344590 155344618 -33934936 + AT_rich Low_complexity Low_complexity 1 28 0 232 373 93 0 chr6 155346716 155346834 -33932720 - L2 LINE L2 -186 3086 2958 238 319 35 42 chr6 155346976 155347120 -33932434 - L2 LINE L2 -527 2787 2645 1798 179 10 60 chr6 155349622 155350025 -33929529 - MER89 LTR ERV1 -2 557 175 186 43 0 0 chr6 155352196 155352219 -33927335 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 345 346 98 17 chr6 155352569 155352937 -33926617 + L2 LINE L2 2645 3049 -264 905 280 42 48 chr6 155352938 155353463 -33926091 + L1ME LINE L1 4089 4610 -1536 245 318 39 67 chr6 155353592 155353771 -33925783 + L1ME3A LINE L1 5954 6127 -43 291 312 21 16 chr6 155353886 155354072 -33925482 + L1MC4 LINE L1 7715 7901 -141 27 29 0 0 chr6 155354170 155354204 -33925350 + AT_rich Low_complexity Low_complexity 1 34 0 180 0 0 0 chr6 155355796 155355816 -33923738 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 504 32 0 0 chr6 155355815 155355877 -33923677 + (TG)n Simple_repeat Simple_repeat 1 62 0 584 305 63 13 chr6 155356467 155356706 -33922848 - MIR SINE MIR -11 251 1 824 225 87 5 chr6 155358166 155358384 -33921170 + L1ME3A LINE L1 5927 6162 -8 1075 220 5 18 chr6 155358657 155358880 -33920674 + MLT1A1 LTR MaLR 146 365 0 402 310 5 53 chr6 155359115 155359302 -33920252 + L1ME LINE L1 5483 5660 -504 318 340 13 0 chr6 155359316 155359466 -33920088 - MER69A DNA AcHobo -9 168 17 1628 197 32 130 chr6 155359642 155360711 -33918843 - L1ME2 LINE L1 -23 6952 6026 1946 139 3 7 chr6 155360807 155361102 -33918452 - AluSx SINE Alu -14 298 5 268 336 0 41 chr6 155361793 155361915 -33917639 + MIR SINE MIR 32 148 -114 322 150 0 25 chr6 155362030 155362110 -33917444 + (TA)n Simple_repeat Simple_repeat 2 79 0 1706 173 7 7 chr6 155362168 155362457 -33917097 - AluJb SINE Alu -23 289 1 243 354 77 0 chr6 155414733 155414863 -33864691 - L3b LINE CR1 -216 1367 1228 471 98 98 0 chr6 155415596 155415678 -33863876 - MSTC LTR MaLR 0 428 339 345 222 26 26 chr6 155415698 155415815 -33863739 - L1ME2 LINE L1 -2243 4714 4598 3726 248 30 45 chr6 155415998 155417589 -33861965 - L1ME2 LINE L1 -4839 2120 560 987 250 80 91 chr6 155417622 155418887 -33860667 - L1MEc LINE L1 -3308 2907 1692 288 269 66 78 chr6 155419075 155419242 -33860312 + MLT1I LTR MaLR 244 408 -1 2245 112 3 0 chr6 155420086 155420398 -33859156 - AluSp SINE Alu 0 313 1 804 65 24 0 chr6 155420739 155420863 -33858691 + (TCTA)n Simple_repeat Simple_repeat 2 128 0 26 82 0 0 chr6 155421194 155421255 -33858299 + AT_rich Low_complexity Low_complexity 1 61 0 1542 122 8 16 chr6 155424021 155424267 -33855287 - MSTA LTR MaLR -184 244 1 1191 267 139 41 chr6 155424713 155425252 -33854302 - MLT1E LTR MaLR -1 592 1 21 36 0 0 chr6 155426047 155426075 -33853479 + AT_rich Low_complexity Low_complexity 1 28 0 195 302 47 23 chr6 155426450 155426536 -33853018 - MIR SINE MIR -63 199 112 337 331 28 21 chr6 155427055 155427200 -33852354 - L2 LINE L2 -245 3068 2923 421 217 26 0 chr6 155427726 155427841 -33851713 + MER53 DNA DNA 22 139 -50 2051 126 0 0 chr6 155428095 155428394 -33851160 + AluSx SINE Alu 7 305 0 284 174 0 87 chr6 155428534 155428603 -33850951 - MLT1B LTR MaLR -2 388 326 206 32 32 0 chr6 155428709 155428740 -33850814 + (CAA)n Simple_repeat Simple_repeat 2 33 0 641 204 15 8 chr6 155428748 155428880 -33850674 + MLT1A1 LTR MaLR 205 337 -28 2172 109 0 10 chr6 155429422 155429735 -33849819 - AluSp SINE Alu -1 312 3 725 289 103 0 chr6 155429767 155429999 -33849555 - MIR SINE MIR 0 262 7 29 0 0 0 chr6 155430347 155430376 -33849178 + AT_rich Low_complexity Low_complexity 1 29 0 48 43 0 0 chr6 155431719 155431788 -33847766 + AT_rich Low_complexity Low_complexity 1 69 0 260 331 57 32 chr6 155431981 155432138 -33847416 - MIR SINE MIR -101 161 1 4606 220 74 79 chr6 155432194 155433571 -33845983 - L1MD2 LINE L1 -2 6357 4975 2114 208 20 13 chr6 155433571 155434023 -33845531 + MSTB2 LTR MaLR 1 455 -2 4606 220 74 79 chr6 155434023 155434347 -33845207 - L1MD2 LINE L1 -1384 4975 4651 2293 90 0 32 chr6 155434347 155434657 -33844897 + AluY SINE Alu 1 300 -11 4606 220 74 79 chr6 155434657 155435120 -33844434 - L1MD2 LINE L1 -1708 4651 4187 1531 98 31 5 chr6 155435120 155435344 -33844210 - MER30 DNA MER1_type 0 230 1 4606 220 74 79 chr6 155435344 155435761 -33843793 - L1MD2 LINE L1 -2172 4187 3769 1549 189 63 17 chr6 155435761 155436110 -33843444 + MLT1A1 LTR MaLR 1 365 0 4606 220 74 79 chr6 155436110 155436658 -33842896 - L1MD2 LINE L1 -2590 3769 3243 771 251 14 18 chr6 155436677 155436896 -33842658 - L1M4 LINE L1 -1201 4945 4728 250 189 0 0 chr6 155436901 155436954 -33842600 + L1 LINE L1 5008 5060 -1086 742 300 86 5 chr6 155437113 155437546 -33842008 + L1ME3A LINE L1 3883 4350 -1796 297 138 0 35 chr6 155437574 155437632 -33841922 + L1PB1 LINE L1 6094 6149 -2 301 341 126 0 chr6 155437702 155437884 -33841670 + L1ME3A LINE L1 4420 4624 -1522 950 175 18 12 chr6 155438486 155438657 -33840897 + FRAM SINE Alu 1 169 -7 1004 262 86 56 chr6 155438798 155439059 -33840495 + L1ME3A LINE L1 5254 5506 -656 1798 123 3 44 chr6 155439059 155439386 -33840168 + AluSx SINE Alu 1 315 0 1004 262 86 56 chr6 155439386 155439764 -33839790 + L1ME3A LINE L1 5506 5901 -261 6193 126 20 3 chr6 155439913 155440915 -33838639 + L1MA1 LINE L1 5276 6294 -8 26 0 0 0 chr6 155441044 155441070 -33838484 + AT_rich Low_complexity Low_complexity 1 26 0 327 179 0 0 chr6 155442303 155442359 -33837195 + AluJ SINE Alu 82 137 -165 1653 185 0 31 chr6 155442361 155442680 -33836874 + AluJb SINE Alu 4 312 0 795 218 36 12 chr6 155442698 155442863 -33836691 + AluJ SINE Alu 120 288 -24 376 252 0 123 chr6 155442905 155443060 -33836494 + MSTD LTR MaLR 67 202 -163 * 392 165 0 25 chr6 155443059 155443138 -33836416 + MSTD LTR MaLR 320 396 0 2575 237 42 11 chr6 155443169 155444042 -33835512 - L1MDb LINE L1 -2798 3608 2709 180 0 0 0 chr6 155444058 155444078 -33835476 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 932 226 0 83 chr6 155444080 155444345 -33835209 - AluJo SINE Alu -30 282 40 3886 212 90 40 chr6 155444374 155445869 -33833685 - L1MDb LINE L1 -3890 2516 1078 23 0 0 0 chr6 155448537 155448560 -33830994 + AT_rich Low_complexity Low_complexity 1 23 0 1648 182 40 70 chr6 155449701 155450103 -33829451 - MLT1B LTR MaLR 0 390 1 2627 294 46 37 chr6 155450105 155450596 -33828958 - L1ME1 LINE L1 -5 6441 5956 2206 102 3 10 chr6 155450596 155450901 -33828653 + AluSp SINE Alu 3 305 -8 2627 294 46 37 chr6 155450901 155451864 -33827690 - L1ME1 LINE L1 -490 5956 4975 685 198 120 6 chr6 155451862 155452029 -33827525 - L1MB7 LINE L1 -20 6164 5979 * 1582 211 32 108 chr6 155452064 155452557 -33826997 + MLT1C-int LTR MaLR 916 1371 0 1498 232 83 12 chr6 155452562 155452984 -33826570 + MLT1C LTR MaLR 6 457 -10 368 317 34 22 chr6 155452987 155453166 -33826388 - L1ME1 LINE L1 -4475 2028 1782 6316 148 24 11 chr6 155453177 155454829 -33824725 - L1MA3 LINE L1 -3 7721 6050 5897 193 52 15 chr6 155454824 155455470 -33824084 - L1MA3 LINE L1 -2469 5096 4475 * 2303 63 10 23 chr6 155455470 155455770 -33823784 + AluY SINE Alu 13 308 -3 5897 193 52 15 chr6 155455770 155456906 -33822648 - L1MA3 LINE L1 -3090 4475 3238 252 59 0 0 chr6 155456916 155456950 -33822604 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 665 192 0 0 chr6 155456951 155457071 -33822483 - AluSq/x SINE Alu -193 120 1 13080 160 26 50 chr6 155457075 155459459 -33820095 - L1MA3 LINE L1 -4313 3252 930 2443 66 0 28 chr6 155459459 155459779 -33819775 - AluY SINE Alu 0 311 1 13080 160 26 50 chr6 155459779 155459917 -33819637 - L1MA3 LINE L1 -6635 930 790 1909 207 6 6 chr6 155460227 155460590 -33818964 - MLT1A1 LTR MaLR 0 365 3 458 278 58 94 chr6 155461873 155462215 -33817339 + MLT1J LTR MaLR 128 457 -54 1931 234 24 11 chr6 155462674 155463126 -33816428 - MLT1C LTR MaLR 0 467 10 193 250 0 0 chr6 155463265 155463309 -33816245 - MIR SINE MIR -15 247 204 986 224 73 33 chr6 155463432 155463857 -33815697 + L1MC5 LINE L1 7476 7917 -44 189 74 0 0 chr6 155465348 155465375 -33814179 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 313 333 185 9 chr6 155465475 155465697 -33813857 + MIR SINE MIR 1 261 -1 22 56 0 0 chr6 155467043 155467079 -33812475 + AT_rich Low_complexity Low_complexity 1 36 0 1525 114 9 135 chr6 155467098 155467532 -33812022 - AluSx SINE Alu 0 393 1 218 227 18 36 chr6 155468020 155468130 -33811424 + (TTATA)n Simple_repeat Simple_repeat 4 111 0 1749 152 29 0 chr6 155469405 155469721 -33809833 - L1MB1 LINE L1 0 6168 5844 623 304 141 4 chr6 155469826 155470053 -33809501 + MIR SINE MIR 2 259 -3 24 0 0 0 chr6 155470801 155470825 -33808729 + AT_rich Low_complexity Low_complexity 1 24 0 251 209 36 27 chr6 155472717 155472827 -33806727 + (TA)n Simple_repeat Simple_repeat 2 112 0 2545 136 49 0 chr6 155472882 155473288 -33806266 - MSTA-int LTR MaLR -1150 430 5 1894 164 122 10 chr6 155473292 155473677 -33805877 - MSTA LTR MaLR 0 428 1 191 339 0 0 chr6 155473677 155473733 -33805821 - MIR SINE MIR -23 239 184 359 205 128 51 chr6 155474056 155474173 -33805381 - L2 LINE L2 -5 3308 3183 285 285 171 56 chr6 155474194 155474534 -33805020 - MLT1J1 LTR MaLR -6 440 62 1973 219 31 5 chr6 155474549 155475204 -33804350 - L1MC/D LINE L1 -754 5392 4824 424 290 12 31 chr6 155475249 155475411 -33804143 - MIR SINE MIR -57 205 47 26 50 0 0 chr6 155479569 155479609 -33799945 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr6 155480526 155480562 -33798992 + AT_rich Low_complexity Low_complexity 1 36 0 303 321 41 55 chr6 155481717 155481988 -33797566 - HAL1 LINE L1 -888 1619 1353 370 217 77 21 chr6 155482250 155482319 -33797235 - L1MA10 LINE L1 -2 6332 6264 638 231 84 62 chr6 155482319 155482592 -33796962 - L1ME1 LINE L1 -66 6100 5822 268 240 326 0 chr6 155482660 155482835 -33796719 - L1ME1 LINE L1 -1570 4576 4345 309 151 0 0 chr6 155482912 155482965 -33796589 + (TA)n Simple_repeat Simple_repeat 1 53 0 230 178 0 0 chr6 155482965 155483010 -33796544 + LTR66 LTR ERVL 394 438 -172 2891 276 91 11 chr6 155483020 155484355 -33795199 - L1ME1 LINE L1 -1925 4221 2780 297 269 0 0 chr6 155484377 155484444 -33795110 - MLT1F LTR MaLR -432 110 44 386 289 69 129 chr6 155484863 155485181 -33794373 - L2 LINE L2 -540 2774 2476 935 281 13 22 chr6 155485182 155485499 -33794055 + L1ME1 LINE L1 5846 6159 -7 1383 256 111 13 chr6 155485859 155486402 -33793152 + L1M4 LINE L1 3523 4118 -2028 434 228 26 212 chr6 155486435 155486558 -33792996 + MER70A LTR ERVL 1 145 -327 2077 75 0 0 chr6 155486558 155486836 -33792718 + L1PA8 LINE L1 5885 6162 -10 434 228 26 212 chr6 155486836 155487103 -33792451 + MER70A LTR ERVL 145 318 -154 8075 219 79 31 chr6 155487117 155487384 -33792170 + L1 LINE L1 1708 1961 -4185 2132 108 7 0 chr6 155487384 155487680 -33791874 + AluSp SINE Alu 1 298 -15 8075 219 79 31 chr6 155487680 155489872 -33789682 + L1 LINE L1 1961 4240 -1906 1622 184 32 0 chr6 155489872 155490150 -33789404 + AluJb SINE Alu 3 289 -23 8075 219 79 31 chr6 155490150 155490403 -33789151 + L1 LINE L1 4240 4479 -1667 2294 321 21 24 chr6 155490412 155491257 -33788297 + L1PA13 LINE L1 1 843 -5944 * 3858 236 24 13 chr6 155491228 155492308 -33787246 + L1PA13 LINE L1 1324 2425 -4372 2908 227 45 47 chr6 155492308 155492447 -33787107 + L1MC3 LINE L1 6735 6873 -912 1815 149 49 35 chr6 155492447 155492817 -33786737 - THE1C LTR MaLR 0 375 1 2908 227 45 47 chr6 155492817 155493101 -33786453 + L1MC3 LINE L1 6873 7156 -629 871 107 27 0 chr6 155493101 155493250 -33786304 - L1MA5A LINE L1 0 6297 6145 2908 227 45 47 chr6 155493250 155493778 -33785776 + L1MC3 LINE L1 7156 7685 -100 34 72 0 0 chr6 155493797 155493866 -33785688 + AT_rich Low_complexity Low_complexity 1 69 0 501 258 13 0 chr6 155493871 155494026 -33785528 + L1MC3 LINE L1 7621 7777 -8 255 400 16 32 chr6 155496670 155496795 -33782759 - L2 LINE L2 -32 3240 3118 21 57 0 0 chr6 155497375 155497410 -33782144 + AT_rich Low_complexity Low_complexity 1 35 0 2066 133 25 30 chr6 155497537 155497899 -33781655 + THE1B LTR MaLR 5 364 0 11220 95 20 13 chr6 155497899 155498246 -33781308 + THE1B-int LTR MaLR 1 344 -1236 2114 128 3 6 chr6 155498246 155498559 -33780995 - AluSx SINE Alu 0 312 1 11220 95 20 13 chr6 155498559 155499780 -33779774 + THE1B-int LTR MaLR 344 1580 0 2135 136 19 32 chr6 155499786 155500155 -33779399 + THE1B LTR MaLR 1 364 0 1017 320 127 39 chr6 155500608 155501324 -33778230 - L2 LINE L2 -605 2709 1931 4177 108 19 0 chr6 155501920 155502782 -33776772 - L1PA8A LINE L1 -538 5593 4714 4047 74 7 13 chr6 155502789 155503343 -33776211 + L1PA8A LINE L1 5568 6118 -13 297 0 0 0 chr6 155504453 155504486 -33775068 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 71 0 0 chr6 155504746 155504788 -33774766 + AT_rich Low_complexity Low_complexity 1 42 0 294 29 0 0 chr6 155505352 155505387 -33774167 + (TG)n Simple_repeat Simple_repeat 2 36 0 186 355 66 33 chr6 155505393 155505545 -33774009 - L2 LINE L2 -557 2757 2601 29 0 0 0 chr6 155508734 155508763 -33770791 + AT_rich Low_complexity Low_complexity 1 29 0 303 247 0 0 chr6 155508996 155509085 -33770469 + (TA)n Simple_repeat Simple_repeat 1 89 0 237 192 0 0 chr6 155509133 155509185 -33770369 + L1MC4 LINE L1 6652 6703 -1339 335 319 54 18 chr6 155509375 155509541 -33770013 + MIR SINE MIR 91 262 0 23 33 0 0 chr6 155509975 155510005 -33769549 + AT_rich Low_complexity Low_complexity 1 30 0 2579 42 0 6 chr6 155510320 155510633 -33768921 - AluY SINE Alu 0 311 1 335 335 39 5 chr6 155510963 155511166 -33768388 - L1MC4a LINE L1 -1918 5890 5681 954 122 7 0 chr6 155511528 155511676 -33767878 + AluSp/q SINE Alu 165 313 0 180 0 0 0 chr6 155511988 155512008 -33767546 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2160 107 0 7 chr6 155512054 155512352 -33767202 - AluSx SINE Alu -16 296 1 458 338 59 14 chr6 155512432 155512651 -33766903 - MIR SINE MIR -15 247 19 2065 99 7 0 chr6 155512684 155512993 -33766561 - AluSx SINE Alu 0 311 1 229 216 0 0 chr6 155512993 155513044 -33766510 + T-rich Low_complexity Low_complexity 1 51 0 300 289 121 64 chr6 155513690 155514144 -33765410 - L1MC4a LINE L1 -1210 4936 4457 201 39 0 0 chr6 155515257 155515283 -33764271 + (CA)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr6 155516518 155516543 -33763011 + AT_rich Low_complexity Low_complexity 1 25 0 1674 133 25 36 chr6 155517425 155517704 -33761850 + AluSx SINE Alu 1 276 -36 7267 40 0 5 chr6 155517720 155518916 -33760638 - L1PA4 LINE L1 -3 6152 4962 222 118 0 0 chr6 155518927 155518961 -33760593 + (A)n Simple_repeat Simple_repeat 1 34 0 22 56 0 0 chr6 155519268 155519304 -33760250 + AT_rich Low_complexity Low_complexity 1 36 0 183 100 0 0 chr6 155519355 155519385 -33760169 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 526 262 140 20 chr6 155519472 155519922 -33759632 - HAL1b LINE L1 -196 1152 649 2845 233 34 17 chr6 155519928 155521133 -33758421 - L1MD1 LINE L1 -14 6228 4964 1039 247 44 81 chr6 155521135 155521653 -33757901 - L1M4 LINE L1 -1099 5047 4549 1907 174 8 5 chr6 155521664 155521908 -33757646 - L1MB1 LINE L1 -1 6167 5920 2616 98 6 11 chr6 155521908 155522274 -33757280 + THE1B LTR MaLR 1 364 0 1907 174 8 5 chr6 155522274 155522413 -33757141 - L1MB1 LINE L1 -248 5920 5783 453 144 51 0 chr6 155522414 155522532 -33757022 + (TA)n Simple_repeat Simple_repeat 1 124 0 241 163 61 0 chr6 155522541 155522590 -33756964 - L1MB1 LINE L1 -974 5172 5121 3166 247 75 90 chr6 155522599 155522737 -33756817 - L1M4 LINE L1 -1609 4537 4398 806 209 6 6 chr6 155522737 155522900 -33756654 - FRAM SINE Alu -3 163 1 3166 247 75 90 chr6 155522900 155523619 -33755935 - L1M4 LINE L1 -1748 4398 3670 261 0 0 0 chr6 155523619 155523648 -33755906 + (TA)n Simple_repeat Simple_repeat 2 30 0 3166 247 75 90 chr6 155523648 155524869 -33754685 - L1M4 LINE L1 -2476 3670 2489 * 5525 204 67 13 chr6 155524864 155525619 -33753935 - L1MC3 LINE L1 0 7785 7072 1936 175 52 38 chr6 155525619 155526041 -33753513 + MSTA LTR MaLR 1 428 0 5525 204 67 13 chr6 155526041 155526170 -33753384 - L1MC3 LINE L1 -713 7072 6951 420 20 0 0 chr6 155526170 155526219 -33753335 + (TG)n Simple_repeat Simple_repeat 2 50 0 5525 204 67 13 chr6 155526219 155526647 -33752907 - L1MC3 LINE L1 -834 6951 6401 2194 119 3 0 chr6 155526683 155526978 -33752576 - AluSx SINE Alu -15 297 2 456 106 0 0 chr6 155527169 155527235 -33752319 - MADE1 DNA Mariner -14 66 1 316 264 52 72 chr6 155527250 155527379 -33752175 - MER31-int LTR ERV1 -2019 2917 2794 192 77 0 0 chr6 155527379 155527405 -33752149 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 316 264 52 72 chr6 155527405 155527525 -33752029 - MER31-int LTR ERV1 -2142 2794 2673 24 0 0 0 chr6 155527574 155527598 -33751956 + AT_rich Low_complexity Low_complexity 1 24 0 1293 213 3 4 chr6 155528428 155528665 -33750889 + Tigger7 DNA MER2_type 28 264 -265 595 133 9 38 chr6 155528663 155528768 -33750786 + Tigger7 DNA MER2_type 2485 2586 -1 * 704 247 12 0 chr6 155528768 155528929 -33750625 + MER58B DNA MER1_type 178 340 -1 1478 249 151 48 chr6 155529640 155529987 -33749567 + L1ME3 LINE L1 5335 5645 -517 2381 75 0 0 chr6 155529987 155530279 -33749275 + AluY SINE Alu 1 292 -19 1478 249 151 48 chr6 155530279 155530587 -33748967 + L1ME3 LINE L1 5645 5920 -242 2049 172 28 0 chr6 155530587 155530941 -33748613 - THE1B LTR MaLR 0 364 1 9086 119 66 40 chr6 155530941 155531124 -33748430 - THE1B-int LTR MaLR 0 1580 1403 1995 148 3 0 chr6 155531124 155531421 -33748133 + AluSx SINE Alu 1 298 -14 9086 119 66 40 chr6 155531421 155532777 -33746777 - THE1B-int LTR MaLR -177 1403 1 2186 132 49 6 chr6 155532777 155533126 -33746428 - THE1B LTR MaLR 0 364 1 1478 249 151 48 chr6 155533126 155533215 -33746339 + L1ME3 LINE L1 5919 6159 -3 29 60 0 0 chr6 155533668 155533718 -33745836 + AT_rich Low_complexity Low_complexity 1 50 0 2725 19 3 0 chr6 155534258 155534573 -33744981 - AluYb8 SINE Alu -2 316 1 1911 133 0 14 chr6 155535207 155535501 -33744053 + AluSx SINE Alu 1 290 -22 228 200 31 15 chr6 155535604 155535669 -33743885 + CT-rich Low_complexity Low_complexity 4 69 0 747 33 0 0 chr6 155535684 155535774 -33743780 + (TTCC)n Simple_repeat Simple_repeat 2 91 0 250 259 0 12 chr6 155536321 155536402 -33743152 + (TA)n Simple_repeat Simple_repeat 2 81 0 2346 70 0 3 chr6 155539006 155539304 -33740250 - AluY SINE Alu -14 297 1 349 125 16 0 chr6 155539310 155539374 -33740180 - L1MA3 LINE L1 -1 6304 6240 713 200 0 27 chr6 155539996 155540146 -33739408 + MLT1B LTR MaLR 1 146 -244 660 159 43 13 chr6 155540146 155540282 -33739272 + MLT1B LTR MaLR 256 502 -3 231 332 88 53 chr6 155541203 155541429 -33738125 + L2 LINE L2 2444 2677 -637 797 328 73 43 chr6 155541514 155542184 -33737370 - ERVL LTR ERVL -931 4833 4144 283 284 73 64 chr6 155542200 155542404 -33737150 - ERVL LTR ERVL -2397 3257 3052 775 264 36 25 chr6 155542509 155542785 -33736769 + L1ME3A LINE L1 5879 6157 -13 255 300 86 0 chr6 155543046 155543116 -33736438 - LTR67 LTR ERVL -368 189 114 1051 107 13 0 chr6 155543156 155543306 -33736248 - THE1B LTR MaLR 0 364 213 8380 117 43 42 chr6 155543306 155544697 -33734857 - THE1B-int LTR MaLR -187 1393 1 2493 122 6 0 chr6 155544699 155545059 -33734495 - THE1B LTR MaLR -2 362 1 215 339 62 9 chr6 155545143 155545255 -33734299 - L2 LINE L2 -5 3308 3191 1807 161 44 19 chr6 155545333 155545699 -33733855 - THE1C LTR MaLR 0 375 1 345 73 18 18 chr6 155545699 155545754 -33733800 - THE1C-int LTR MaLR 0 1580 1526 613 71 0 0 chr6 155545755 155545840 -33733714 + MLT2A1 LTR ERVL 1 85 -368 * 1404 116 80 44 chr6 155545838 155546047 -33733507 + MLT2A1 LTR ERVL 186 407 -37 530 9 9 78 chr6 155546047 155546163 -33733391 + (TA)n Simple_repeat Simple_repeat 2 109 0 1404 116 80 44 chr6 155546163 155546203 -33733351 + MLT2A1 LTR ERVL 407 444 0 26606 119 30 24 chr6 155546203 155550394 -33729160 + HERVL-A1 LTR ERVL 1 4220 -1434 455 123 0 0 chr6 155550470 155550543 -33729011 + MER57A LTR ERV1 329 401 -2 24 0 0 0 chr6 155551690 155551714 -33727840 + AT_rich Low_complexity Low_complexity 1 24 0 284 279 68 59 chr6 155551925 155552147 -33727407 + L1MEd LINE L1 979 1202 -5003 281 284 115 19 chr6 155552650 155552858 -33726696 + L1MEd LINE L1 1390 1617 -4779 352 344 0 45 chr6 155553049 155553270 -33726284 + L1MEd LINE L1 1864 2074 -4322 228 35 0 0 chr6 155553328 155553357 -33726197 + (CA)n Simple_repeat Simple_repeat 2 30 0 521 285 65 83 chr6 155553821 155554193 -33725361 - L2 LINE L2 0 3313 2949 823 250 74 11 chr6 155555389 155555719 -33723835 - MSTD LTR MaLR 0 396 1 1975 177 39 38 chr6 155555775 155556325 -33723229 + MLT2A2 LTR ERVL 1 554 0 383 191 24 0 chr6 155556422 155556506 -33723048 - MLT1D LTR MaLR 0 505 420 1552 146 0 0 chr6 155556535 155556774 -33722780 + L1P4 LINE L1 5501 5739 -427 816 280 104 14 chr6 155556776 155557122 -33722432 - MLT1D LTR MaLR -72 433 57 925 159 12 6 chr6 155559292 155559455 -33720099 + L1MC1 LINE L1 5882 6045 -288 1218 135 26 26 chr6 155559560 155559790 -33719764 + L1MC1 LINE L1 6104 6333 0 22 0 0 0 chr6 155559929 155559951 -33719603 + AT_rich Low_complexity Low_complexity 1 22 0 218 81 27 0 chr6 155560952 155560989 -33718565 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 266 266 179 20 chr6 155562203 155562402 -33717152 + L1MEd LINE L1 1280 1488 -4896 559 193 28 14 chr6 155562649 155562780 -33716774 + MSTA LTR MaLR 1 142 -233 3183 186 35 8 chr6 155563461 155564182 -33715372 - L1MB1 LINE L1 -246 5922 5183 1899 160 8 48 chr6 155564183 155564558 -33714996 + L1MA10 LINE L1 5885 6244 -90 1853 204 75 60 chr6 155564561 155564757 -33714797 - MER34 LTR ERV1 0 542 350 1914 148 73 14 chr6 155564757 155565101 -33714453 + THE1B LTR MaLR 1 364 0 1853 204 75 60 chr6 155565101 155565294 -33714260 - MER34 LTR ERV1 -192 350 140 2324 79 0 22 chr6 155565294 155565610 -33713944 - AluY SINE Alu -2 309 1 1853 204 75 60 chr6 155565610 155565753 -33713801 - MER34 LTR ERV1 -402 140 1 372 167 11 33 chr6 155565753 155565843 -33713711 + L1MA10 LINE L1 6244 6331 -3 499 222 0 0 chr6 155566387 155566486 -33713068 + MIR SINE MIR 163 261 -1 1066 237 55 80 chr6 155567588 155568065 -33711489 - MLT1C LTR MaLR -2 465 1 2098 133 0 0 chr6 155568215 155568516 -33711038 + AluSx SINE Alu 1 301 -11 924 233 10 5 chr6 155568952 155569154 -33710400 - MLT1B LTR MaLR -1 389 187 563 209 35 99 chr6 155569190 155569391 -33710163 - MLT1B LTR MaLR -186 188 1 237 268 99 0 chr6 155569726 155569797 -33709757 + L3 LINE CR1 892 969 -608 2072 143 36 38 chr6 155569813 155570178 -33709376 + THE1B LTR MaLR 1 364 0 193 274 35 62 chr6 155570490 155570603 -33708951 - MIR SINE MIR 0 262 153 231 269 227 14 chr6 155571190 155571331 -33708223 - MIR SINE MIR -44 218 48 243 0 0 0 chr6 155571499 155571526 -33708028 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 251 342 71 29 chr6 155572016 155572114 -33707440 - HAL1 LINE L1 -2038 469 377 2114 204 40 13 chr6 155572114 155572569 -33706985 + MLT1C LTR MaLR 1 467 0 251 342 71 29 chr6 155572569 155572751 -33706803 - HAL1 LINE L1 -2130 377 177 21 36 0 0 chr6 155572753 155572781 -33706773 + AT_rich Low_complexity Low_complexity 1 28 0 300 316 65 32 chr6 155572801 155572956 -33706598 - HAL1 LINE L1 -2344 163 4 22 35 0 0 chr6 155573181 155573210 -33706344 + AT_rich Low_complexity Low_complexity 1 29 0 6929 215 61 6 chr6 155573558 155574991 -33704563 + L1M1 LINE L1 15 1525 -6040 5697 196 29 11 chr6 155574988 155576634 -33702920 + L1M1 LINE L1 3327 5007 -2558 * 6331 186 23 6 chr6 155576633 155577941 -33701613 + L1M1 LINE L1 5423 6752 -813 889 266 140 56 chr6 155578077 155578434 -33701120 - L1MDa LINE L1 -5616 924 538 1639 183 48 74 chr6 155578443 155578836 -33700718 - MLT1B LTR MaLR 0 390 8 788 299 19 5 chr6 155578858 155579069 -33700485 - L1MDa LINE L1 -6023 517 304 223 254 32 0 chr6 155579405 155579468 -33700086 - MIR SINE MIR -48 214 150 859 281 65 51 chr6 155579668 155580024 -33699530 + LTR33 LTR ERVL 138 498 -23 635 327 120 25 chr6 155582502 155583103 -33696451 - L2 LINE L2 -87 3226 2580 2033 129 0 16 chr6 155583168 155583471 -33696083 + AluSx SINE Alu 1 298 -14 29 60 0 0 chr6 155583869 155583919 -33695635 + AT_rich Low_complexity Low_complexity 1 50 0 1666 172 35 0 chr6 155584342 155584632 -33694922 - AluJo SINE Alu -12 300 1 23 33 0 0 chr6 155584706 155584736 -33694818 + AT_rich Low_complexity Low_complexity 1 30 0 35 71 0 0 chr6 155585210 155585280 -33694274 + AT_rich Low_complexity Low_complexity 1 70 0 607 286 85 39 chr6 155588302 155588585 -33690969 + MLT1H LTR MaLR 12 307 -242 1298 270 51 55 chr6 155588735 155589338 -33690216 - L1ME1 LINE L1 -5 6230 5630 1683 174 15 15 chr6 155589354 155589693 -33689861 - LTR27 LTR ERV1 0 636 298 624 254 0 18 chr6 155589688 155589857 -33689697 - LTR28 LTR ERV1 -854 166 1 * 5975 267 63 43 chr6 155589857 155592517 -33687037 - L1ME1 LINE L1 -614 5621 2877 2341 162 10 5 chr6 155592517 155592918 -33686636 - MER57A LTR ERV1 0 403 1 5975 267 63 43 chr6 155592918 155595072 -33684482 - L1ME1 LINE L1 -3358 2877 767 1396 119 0 10 chr6 155595072 155595322 -33684232 - AluSq SINE Alu 0 332 85 1290 303 66 38 chr6 155595466 155595577 -33683977 - L1ME1 LINE L1 -5627 769 663 2035 123 3 19 chr6 155595577 155595886 -33683668 + AluY SINE Alu 1 304 -7 1290 303 66 38 chr6 155595886 155596488 -33683066 - L1ME1 LINE L1 -5733 663 36 457 312 37 0 chr6 155596497 155596686 -33682868 + L1ME2 LINE L1 4854 5049 -1097 1619 267 87 48 chr6 155596742 155597161 -33682393 + L1ME2 LINE L1 5149 5550 -614 291 54 0 0 chr6 155597161 155597198 -33682356 + (TG)n Simple_repeat Simple_repeat 2 38 0 1619 267 87 48 chr6 155597198 155597740 -33681814 + L1ME2 LINE L1 5550 6155 -9 21 0 0 0 chr6 155597823 155597844 -33681710 + AT_rich Low_complexity Low_complexity 1 21 0 1652 165 0 75 chr6 155598038 155598371 -33681183 - AluJb SINE Alu -3 309 2 1534 200 144 58 chr6 155598537 155599016 -33680538 - MLT2B1 LTR ERVL 0 520 1 2956 182 56 3 chr6 155599016 155599887 -33679667 - ERVL LTR ERVL -1924 3840 2885 5949 168 7 25 chr6 155602390 155602856 -33676698 - L1MC1 LINE L1 -11 6322 5849 1828 140 14 7 chr6 155602856 155603148 -33676406 + AluSx SINE Alu 1 294 -18 5949 168 7 25 chr6 155603148 155603737 -33675817 - L1MC1 LINE L1 -484 5849 5284 3722 89 2 12 chr6 155603737 155604256 -33675298 + MER75 DNA T2_type 1 514 0 5949 168 7 25 chr6 155604256 155604368 -33675186 - L1MC1 LINE L1 -1049 5284 5172 23 78 0 0 chr6 155604968 155605019 -33674535 + AT_rich Low_complexity Low_complexity 1 51 0 241 350 147 18 chr6 155605645 155605808 -33673746 + MIR3 SINE MIR 3 186 -22 390 42 0 0 chr6 155606127 155606175 -33673379 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 241 139 0 0 chr6 155607750 155607786 -33671768 + MLT1A1 LTR MaLR 5 40 -334 1891 155 116 3 chr6 155607787 155608116 -33671438 - MER47A DNA MER2_type 0 366 1 892 178 13 6 chr6 155608119 155608276 -33671278 + MLT1A1 LTR MaLR 43 200 -165 242 50 83 17 chr6 155608276 155608336 -33671218 + A-rich Low_complexity Low_complexity 5 68 0 37 86 0 0 chr6 155658368 155658461 -33621093 + AT_rich Low_complexity Low_complexity 1 93 0 22 0 0 0 chr6 155658505 155658527 -33621027 + AT_rich Low_complexity Low_complexity 1 22 0 516 161 4 33 chr6 155658533 155659095 -33620459 + (TA)n Simple_repeat Simple_repeat 1 545 0 315 224 0 51 chr6 155659098 155659196 -33620358 - L1MC4 LINE L1 -1337 6705 6613 493 109 0 36 chr6 155659200 155659337 -33620217 + (TA)n Simple_repeat Simple_repeat 2 133 0 615 205 5 25 chr6 155659432 155659593 -33619961 - L1PA13 LINE L1 0 6174 6020 30 83 0 0 chr6 155659878 155659950 -33619604 + AT_rich Low_complexity Low_complexity 1 72 0 3661 268 98 50 chr6 155660330 155660397 -33619157 - L1M4c LINE L1 -4543 2416 2354 6590 166 22 19 chr6 155660397 155661693 -33617861 - HSMAR2 DNA Mariner 0 1302 2 3661 268 98 50 chr6 155661693 155661783 -33617771 - L1M4c LINE L1 -4605 2354 2270 2251 100 0 0 chr6 155661783 155662092 -33617462 - AluY SINE Alu -2 309 1 3661 268 98 50 chr6 155662092 155664237 -33615317 - L1M4c LINE L1 -4689 2270 14 219 114 0 0 chr6 155666337 155666372 -33613182 + (CA)n Simple_repeat Simple_repeat 2 36 0 373 221 11 32 chr6 155666715 155666800 -33612754 - Tigger5 DNA MER2_type 0 2323 2239 1632 195 0 3 chr6 155666800 155667102 -33612452 + AluJo SINE Alu 1 301 -11 397 261 0 0 chr6 155667125 155667213 -33612341 + Tigger5 DNA MER2_type 1 88 -2235 230 279 0 15 chr6 155667255 155667323 -33612231 - Tigger5 DNA MER2_type -2256 67 1 1639 112 12 0 chr6 155667776 155668025 -33611529 - L1P4 LINE L1 -610 5555 5304 455 212 42 2 chr6 155668397 155668514 -33611040 - MER2 DNA MER2_type -96 143 14 296 280 79 3 chr6 155668803 155668974 -33610580 + L1MC5 LINE L1 6723 6992 -1050 745 214 36 143 chr6 155669068 155669259 -33610295 + L1MC5 LINE L1 6957 7167 -794 1952 108 23 16 chr6 155669259 155669566 -33609988 + AluSx SINE Alu 1 309 -3 745 214 36 143 chr6 155669566 155669711 -33609843 + L1MC5 LINE L1 7167 7230 -731 487 123 0 12 chr6 155669711 155669792 -33609762 + MADE1 DNA Mariner 1 80 0 745 214 36 143 chr6 155669792 155669931 -33609623 + L1MC5 LINE L1 7230 7382 -579 265 223 85 11 chr6 155670036 155670130 -33609424 + L1MC5 LINE L1 7452 7552 -409 1344 104 0 0 chr6 155670150 155670333 -33609221 + AluSg/x SINE Alu 127 309 0 553 269 45 55 chr6 155670351 155670659 -33608895 + L1MC5 LINE L1 7609 7913 -48 8491 34 39 0 chr6 155672000 155673048 -33606506 - L1PA3 LINE L1 -1109 5037 3949 7783 19 0 0 chr6 155673048 155674188 -33605366 + L1PA3 LINE L1 5013 6152 -3 2394 68 0 0 chr6 155674336 155674632 -33604922 - AluY SINE Alu -15 296 1 435 222 79 24 chr6 155674967 155675093 -33604461 - MIR SINE MIR -93 169 37 779 223 28 135 chr6 155675237 155675592 -33603962 + MLT1A2 LTR MaLR 40 356 -18 318 246 34 6 chr6 155676134 155676309 -33603245 + (TA)n Simple_repeat Simple_repeat 1 180 0 250 95 65 36 chr6 155676310 155676478 -33603076 + (TTATA)n Simple_repeat Simple_repeat 4 176 0 227 149 69 0 chr6 155676472 155676979 -33602575 + (TA)n Simple_repeat Simple_repeat 1 542 0 * 482 94 44 34 chr6 155676990 155677231 -33602323 + (TA)n Simple_repeat Simple_repeat 1 243 0 197 344 160 15 chr6 155677350 155677481 -33602073 - L3b LINE CR1 -35 1548 1399 479 298 137 18 chr6 155678343 155678516 -33601038 - L1M4 LINE L1 -927 5219 5068 618 39 0 0 chr6 155678516 155678593 -33600961 + (TG)n Simple_repeat Simple_repeat 1 77 0 479 298 137 18 chr6 155678593 155678755 -33600799 - L1M4 LINE L1 -1078 5068 4844 * 1045 147 10 38 chr6 155678752 155679023 -33600531 - L1MB1 LINE L1 -729 5439 5185 * 2415 167 40 18 chr6 155679019 155679640 -33599914 + L1MB1 LINE L1 5440 6167 -1 604 254 23 0 chr6 155679651 155679824 -33599730 - L1M4 LINE L1 -1287 4859 4683 462 331 77 59 chr6 155679826 155680020 -33599534 - L1MEc LINE L1 -5465 931 742 1963 133 3 10 chr6 155680020 155680322 -33599232 - AluSq SINE Alu -13 300 1 462 331 77 59 chr6 155680322 155681008 -33598546 - L1MEc LINE L1 -5654 742 35 358 329 46 5 chr6 155680994 155681210 -33598344 + L1 LINE L1 3609 3833 -2313 * 209 179 0 18 chr6 155681951 155682007 -33597547 + GA-rich Low_complexity Low_complexity 2 56 0 2091 211 46 0 chr6 155682184 155682616 -33596938 + Tigger1 DNA MER2_type 2 453 -1965 2166 120 0 0 chr6 155682646 155682955 -33596599 - AluSc SINE Alu 0 309 1 2229 142 16 16 chr6 155682956 155683329 -33596225 - THE1C LTR MaLR -2 373 1 * 11803 137 20 19 chr6 155683329 155685102 -33594452 + Tigger1 DNA MER2_type 460 2238 -180 1840 127 3 35 chr6 155685102 155685432 -33594122 - AluSx SINE Alu 0 332 12 11803 137 20 19 chr6 155685432 155685614 -33593940 + Tigger1 DNA MER2_type 2238 2418 0 890 211 68 13 chr6 155685656 155685893 -33593661 + LOR1b LTR ERV1 1 250 -211 1276 204 98 7 chr6 155686145 155686420 -33593134 - AluJo SINE Alu -2 300 1 1014 152 61 30 chr6 155686807 155687004 -33592550 - MLT1B LTR MaLR 0 390 188 725 154 47 40 chr6 155687039 155687188 -33592366 - MLT1B LTR MaLR -196 194 45 * 2024 143 18 3 chr6 155687169 155687504 -33592050 - MER46B DNA MER2_type -21 215 1 450 169 0 0 chr6 155687504 155687581 -33591973 - MLT1B LTR MaLR -313 77 1 238 317 0 0 chr6 155687596 155687656 -33591898 - L2 LINE L2 -58 3255 3196 254 254 198 16 chr6 155687661 155687787 -33591767 + MIR SINE MIR 101 249 -13 550 230 8 16 chr6 155688277 155688403 -33591151 - L2 LINE L2 0 3313 3189 271 273 11 102 chr6 155689036 155689124 -33590430 + L2 LINE L2 3132 3211 -61 340 270 0 0 chr6 155689161 155689261 -33590293 - L1MB8 LINE L1 -2 6176 6077 650 218 6 0 chr6 155689261 155689399 -33590155 + LTR28 LTR ERV1 1 800 -905 1621 247 36 16 chr6 155689494 155690076 -33589478 + L1MC3 LINE L1 2736 3329 -2817 3284 249 48 59 chr6 155690095 155690376 -33589178 + L1MC3 LINE L1 3781 4063 -2083 2074 207 52 5 chr6 155690376 155690816 -33588738 - LOR1b LTR ERV1 0 461 1 3284 249 48 59 chr6 155690816 155690950 -33588604 + L1MC3 LINE L1 4063 4197 -1949 1394 216 35 49 chr6 155690950 155691320 -33588234 + MLT1A1 LTR MaLR 1 365 0 3284 249 48 59 chr6 155691320 155692235 -33587319 + L1MC3 LINE L1 4197 5098 -1048 2194 151 68 27 chr6 155692284 155692695 -33586859 - MSTA LTR MaLR 0 428 1 225 170 0 21 chr6 155692792 155692839 -33586715 - MLT1D LTR MaLR 0 626 581 1232 152 11 34 chr6 155692843 155693203 -33586351 + MSTB1 LTR MaLR 1 432 0 800 224 161 6 chr6 155693203 155693562 -33585992 - MLT1D LTR MaLR -45 460 6 2113 225 78 27 chr6 155693562 155694201 -33585353 + L1MC3 LINE L1 5305 5976 -1809 329 296 81 83 chr6 155694210 155694741 -33584813 - L1M4 LINE L1 -5997 545 16 467 141 54 0 chr6 155695683 155695775 -33583779 + L1MD3 LINE L1 7741 7837 -158 2432 97 46 6 chr6 155696448 155696798 -33582756 - THE1B LTR MaLR 0 364 1 22 80 0 0 chr6 155696827 155696877 -33582677 + AT_rich Low_complexity Low_complexity 1 50 0 1564 206 51 9 chr6 155697997 155698347 -33581207 + MLT1A1 LTR MaLR 1 365 0 216 346 28 37 chr6 155698365 155698472 -33581082 + MER5A DNA MER1_type 1 106 -83 438 317 106 0 chr6 155698930 155699091 -33580463 - MER45A DNA AcHobo 0 178 1 2244 89 0 0 chr6 155699188 155699480 -33580074 + AluSc SINE Alu 1 292 -17 2221 74 0 7 chr6 155699542 155699850 -33579704 - AluSc SINE Alu 0 306 1 28 0 0 0 chr6 155699890 155699918 -33579636 + AT_rich Low_complexity Low_complexity 1 28 0 644 249 121 18 chr6 155701123 155701513 -33578041 - Charlie2 DNA MER1_type -88 2774 2345 5518 184 21 8 chr6 155701513 155702030 -33577524 - L1PB3 LINE L1 -33 6121 5612 1917 150 50 36 chr6 155702030 155702389 -33577165 - THE1B LTR MaLR 0 364 1 5518 184 21 8 chr6 155702389 155703793 -33575761 - L1PB3 LINE L1 -542 5612 4171 555 253 151 26 chr6 155703794 155704040 -33575514 - Charlie2 DNA MER1_type -476 2386 2172 222 118 0 0 chr6 155704040 155704074 -33575480 + (TA)n Simple_repeat Simple_repeat 2 35 0 555 253 151 26 chr6 155704074 155704211 -33575343 - Charlie2 DNA MER1_type -690 2172 1955 613 264 114 22 chr6 155704731 155704958 -33574596 + MIR SINE MIR 1 248 -14 1297 218 105 17 chr6 155704958 155705302 -33574252 - MLT1A2 LTR MaLR 0 374 1 202 176 0 39 chr6 155705757 155705808 -33573746 + T-rich Low_complexity Low_complexity 3 51 0 390 282 39 0 chr6 155706007 155706110 -33573444 + L2 LINE L2 3196 3302 -11 1078 148 15 5 chr6 155706723 155706926 -33572628 - L1MA5A LINE L1 0 6297 6093 1519 248 51 53 chr6 155707121 155707686 -33571868 - L1ME3 LINE L1 -106 6056 5493 414 156 8 12 chr6 155707691 155707777 -33571777 + MLT1A1 LTR MaLR 2 84 -311 3860 214 61 11 chr6 155707780 155708637 -33570917 + L1M1 LINE L1 40 939 -6626 1773 235 71 60 chr6 155708653 155709201 -33570353 - MLT2B3 LTR ERVL 0 554 1 2485 179 14 38 chr6 155709202 155709685 -33569869 + L1M1 LINE L1 967 1437 -6128 2757 94 0 176 chr6 155709685 155709708 -33569846 + THE1B-int LTR MaLR 2 27 -1553 2436 127 0 14 chr6 155709708 155710077 -33569477 + THE1B LTR MaLR 1 364 0 2757 94 0 176 chr6 155710077 155710650 -33568904 + THE1B-int LTR MaLR 27 493 -1087 361 114 0 2 chr6 155710654 155710909 -33568645 + AluSg SINE Alu 1 308 0 1995 118 0 11 chr6 155710918 155711197 -33568357 + AluSg1 SINE Alu 1 276 -33 180 0 0 0 chr6 155711199 155711219 -33568335 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6766 145 25 3 chr6 155711221 155712281 -33567273 + THE1B-int LTR MaLR 498 1580 0 2496 112 22 0 chr6 155712281 155712637 -33566917 + THE1B LTR MaLR 1 364 0 9091 159 39 3 chr6 155712639 155714241 -33565313 + L1M1 LINE L1 1458 3117 -4448 2191 106 0 0 chr6 155714243 155714536 -33565018 - AluSg SINE Alu -17 293 1 875 162 31 149 chr6 155714576 155714798 -33564756 + MLT1A1 LTR MaLR 162 365 0 4335 168 92 23 chr6 155714817 155715718 -33563836 + ERVL-B1 LTR ERVL 4794 5756 -8 1677 243 83 5 chr6 155715718 155716154 -33563400 + MLT2B1 LTR ERVL 1 470 -50 235 229 0 0 chr6 155716217 155716265 -33563289 + MLT2B1 LTR ERVL 507 554 0 1632 273 54 35 chr6 155716278 155717121 -33562433 - L1ME LINE L1 -691 5479 4620 511 283 13 20 chr6 155722271 155722423 -33557131 - MIR SINE MIR -2 260 110 29 0 0 0 chr6 155723262 155723291 -33556263 + AT_rich Low_complexity Low_complexity 1 29 0 639 243 44 24 chr6 155723638 155723844 -33555710 - MER58A DNA MER1_type -5 219 10 2068 75 49 39 chr6 155724555 155724863 -33554691 - AluY SINE Alu 0 311 1 1380 211 32 47 chr6 155724877 155725257 -33554297 - MLT1A2 LTR MaLR 0 374 1 1456 232 107 26 chr6 155727573 155728039 -33551515 - MLT1D LTR MaLR -1 504 1 254 227 68 0 chr6 155728937 155729025 -33550529 + (TAGA)n Simple_repeat Simple_repeat 1 94 0 493 189 85 0 chr6 155729122 155729228 -33550326 + L1MA6 LINE L1 6186 6300 0 2570 196 62 28 chr6 155729287 155729895 -33549659 + L1MB5 LINE L1 5538 6166 -8 1244 220 79 77 chr6 155731028 155731574 -33547980 + MLT1H LTR MaLR 1 547 -2 1521 186 101 14 chr6 155731711 155732066 -33547488 + MLT1B LTR MaLR 1 386 -4 645 217 84 6 chr6 155732138 155732304 -33547250 + LOR1b LTR ERV1 17 195 -266 1539 138 4 0 chr6 155732305 155732536 -33547018 + LOR1a LTR ERV1 266 497 0 1895 112 4 4 chr6 155734106 155734409 -33545145 + AluSq SINE Alu 46 348 0 182 368 63 0 chr6 155734500 155734595 -33544959 + MIR SINE MIR 70 170 -92 1734 224 74 79 chr6 155734662 155734869 -33544685 - L1MD2 LINE L1 -7 6352 6145 414 0 0 0 chr6 155734869 155734915 -33544639 + (TG)n Simple_repeat Simple_repeat 1 46 0 1734 224 74 79 chr6 155734915 155735454 -33544100 - L1MD2 LINE L1 -214 6145 5608 2380 114 8 22 chr6 155735454 155735821 -33543733 + THE1B LTR MaLR 3 364 0 1734 224 74 79 chr6 155735821 155735846 -33543708 - L1MD2 LINE L1 -751 5608 5584 326 161 54 75 chr6 155735889 155735982 -33543572 - L1MD2 LINE L1 -635 5607 5517 2297 135 80 8 chr6 155735994 155736393 -33543161 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr6 155736413 155736435 -33543119 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr6 155739585 155739621 -33539933 + AT_rich Low_complexity Low_complexity 1 36 0 541 281 120 34 chr6 155739806 155740073 -33539481 + L2 LINE L2 3023 3312 -1 1955 64 0 128 chr6 155740624 155740951 -33538603 - AluYa5 SINE Alu -26 285 1 23 0 0 0 chr6 155741002 155741025 -33538529 + AT_rich Low_complexity Low_complexity 1 23 0 459 275 22 54 chr6 155741115 155741337 -33538217 + L1ME1 LINE L1 5937 6154 -12 309 322 112 0 chr6 155741352 155741495 -33538059 + L1MEc LINE L1 1626 1784 -4612 385 244 52 0 chr6 155741883 155742018 -33537536 + L1MEc LINE L1 2166 2307 -4089 1054 285 84 10 chr6 155742065 155742837 -33536717 + L1MEc LINE L1 2453 3281 -2934 598 291 55 58 chr6 155742966 155743513 -33536041 + L1M4 LINE L1 4518 5062 -1084 337 250 62 18 chr6 155743543 155743655 -33535899 + MER94 DNA DNA 1 117 -17 6702 179 35 42 chr6 155743936 155745328 -33534226 + L1M1 LINE L1 20 1401 -6164 39 22 0 0 chr6 155745531 155745577 -33533977 + AT_rich Low_complexity Low_complexity 1 46 0 1617 183 0 50 chr6 155746404 155746726 -33532828 - AluJo SINE Alu -4 308 3 1011 194 53 9 chr6 155747056 155747283 -33532271 - L1MB1 LINE L1 -1 6167 5931 5921 110 0 0 chr6 155747588 155748430 -33531124 + L1PA10 LINE L1 5327 6168 0 435 83 0 0 chr6 155749835 155749895 -33529659 + (CA)n Simple_repeat Simple_repeat 2 61 0 232 185 0 99 chr6 155749895 155749976 -33529578 - L1MC4 LINE L1 -1339 6703 6631 2302 79 0 3 chr6 155750632 155750924 -33528630 - AluSq SINE Alu -20 293 3 338 267 42 17 chr6 155751381 155751501 -33528053 - L1ME3 LINE L1 0 6162 6040 572 258 223 19 chr6 155752132 155752508 -33527046 + L1MC4a LINE L1 5771 6223 -1585 * 1129 170 22 9 chr6 155752506 155752729 -33526825 - L1 LINE L1 -2253 3893 3668 420 281 43 47 chr6 155752766 155752933 -33526621 - L1M4 LINE L1 -1945 4595 4428 1837 214 3 3 chr6 155752933 155753298 -33526256 - MER47A DNA MER2_type 0 366 2 420 281 43 47 chr6 155753298 155753383 -33526171 - L1M4 LINE L1 -2112 4428 4344 21 0 0 0 chr6 155753891 155753912 -33525642 + AT_rich Low_complexity Low_complexity 1 21 0 230 359 14 14 chr6 155754531 155754676 -33524878 - L1ME3 LINE L1 -2250 5558 5414 230 246 0 18 chr6 155754957 155755014 -33524540 + (TATG)n Simple_repeat Simple_repeat 1 56 0 412 265 163 0 chr6 155755291 155755438 -33524116 - MLT2E LTR ERVL 0 628 458 1594 163 21 17 chr6 155755572 155755860 -33523694 + MSTB1 LTR MaLR 144 432 0 1863 318 36 14 chr6 155756070 155756848 -33522706 - ERVL LTR ERVL -392 5372 4578 2040 330 26 6 chr6 155756849 155757653 -33521901 - ERVL LTR ERVL -1550 4214 3395 2729 253 53 17 chr6 155757744 155758879 -33520675 - L1MCa LINE L1 -2906 3634 2464 2305 114 42 3 chr6 155758887 155759246 -33520308 - THE1C LTR MaLR -2 373 1 4062 187 9 6 chr6 155759246 155760055 -33519499 - L1MA4 LINE L1 -15 6467 5657 2144 105 0 17 chr6 155760056 155760352 -33519202 - AluSc SINE Alu -18 291 1 247 133 0 0 chr6 155760365 155760410 -33519144 - Alu SINE Alu -8 294 250 12622 189 51 11 chr6 155760417 155762503 -33517051 - L1MA4 LINE L1 -743 5585 3428 2099 99 34 10 chr6 155762503 155762795 -33516759 - AluSc SINE Alu -10 299 1 12622 189 51 11 chr6 155762795 155763706 -33515848 - L1MA4 LINE L1 -2900 3428 2555 6133 166 45 27 chr6 155763691 155764928 -33514626 - L1MA4 LINE L1 -4068 1260 2 * 2816 258 98 25 chr6 155764924 155766178 -33513376 - L1MCa LINE L1 -4047 2493 1148 * 667 232 25 25 chr6 155766154 155766352 -33513202 + L1MC5 LINE L1 7716 7913 -48 * 26 50 0 0 chr6 155766401 155766441 -33513113 + AT_rich Low_complexity Low_complexity 1 40 0 396 0 0 0 chr6 155769046 155769090 -33510464 + (TA)n Simple_repeat Simple_repeat 2 45 0 45 34 0 0 chr6 155770469 155770528 -33509026 + AT_rich Low_complexity Low_complexity 1 59 0 2496 43 0 7 chr6 155771034 155771338 -33508216 - AluY SINE Alu -9 302 1 4304 259 83 49 chr6 155771973 155772209 -33507345 + L1MB8 LINE L1 10 237 -6722 4521 144 52 6 chr6 155772209 155772999 -33506555 - LTR1B LTR ERV1 0 826 1 4304 259 83 49 chr6 155772999 155773882 -33505672 + L1MB8 LINE L1 237 1089 -5870 2230 192 21 28 chr6 155773882 155774163 -33505391 - MLT1C LTR MaLR 0 467 189 2196 115 0 10 chr6 155774163 155774476 -33505078 - AluSx SINE Alu -2 310 1 2230 192 21 28 chr6 155774476 155774663 -33504891 - MLT1C LTR MaLR -278 189 2 4304 259 83 49 chr6 155774663 155775485 -33504069 + L1MB8 LINE L1 1089 2046 -4913 2130 131 3 0 chr6 155775485 155775791 -33503763 - AluSp SINE Alu -6 307 1 4304 259 83 49 chr6 155775791 155776176 -33503378 + L1MB8 LINE L1 2046 2416 -4543 1205 217 11 0 chr6 155776227 155776494 -33503060 + L1MB8 LINE L1 4237 4506 -2451 418 177 62 0 chr6 155776500 155776596 -33502958 - L1 LINE L1 -818 5328 5227 * 2272 184 28 163 chr6 155776588 155777015 -33502539 + L1MB8 LINE L1 5237 5720 -1269 2717 22 0 3 chr6 155777015 155777327 -33502227 - AluY SINE Alu 0 311 1 2272 184 28 163 chr6 155777327 155777486 -33502068 + L1MB8 LINE L1 5720 5899 -1090 196 29 29 29 chr6 155777486 155777520 -33502034 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2272 184 28 163 chr6 155777520 155777842 -33501712 + L1MB8 LINE L1 5899 5949 -1040 2472 112 3 0 chr6 155777842 155778209 -33501345 - L1PA13 LINE L1 -2 6161 5794 2272 184 28 163 chr6 155778209 155778505 -33501049 + L1MB8 LINE L1 5949 6283 -706 1671 229 88 13 chr6 155778510 155778985 -33500569 + L1MB8 LINE L1 6465 6975 -14 261 71 24 0 chr6 155779272 155779314 -33500240 + MADE1 DNA Mariner 4 46 -34 190 377 54 8 chr6 155779315 155779445 -33500109 + MIR SINE MIR 41 176 -86 931 108 8 0 chr6 155779673 155779802 -33499752 + AluSg/x SINE Alu 164 293 -19 223 265 88 0 chr6 155782379 155782447 -33497107 + L3 LINE CR1 1244 1317 -260 188 337 12 12 chr6 155782715 155782798 -33496756 - MIR SINE MIR -68 140 58 499 336 147 10 chr6 155784083 155784395 -33495159 + L3 LINE CR1 1051 1405 -172 228 139 141 0 chr6 155784750 155784832 -33494722 + MIR SINE MIR 95 194 -68 599 277 109 27 chr6 155784916 155785172 -33494382 + MLT1J1 LTR MaLR 5 281 -165 1076 215 86 0 chr6 155785498 155785777 -33493777 + MER63 DNA MER1_type 758 1060 -1 246 292 21 10 chr6 155785786 155785882 -33493672 + MLT1J1 LTR MaLR 350 446 0 2345 194 21 15 chr6 155787914 155788383 -33491171 + MER70A LTR ERVL 1 472 0 25 51 0 0 chr6 155789837 155789876 -33489678 + AT_rich Low_complexity Low_complexity 1 39 0 459 366 37 5 chr6 155789945 155790161 -33489393 - L3 LINE CR1 -454 1123 901 2036 151 120 8 chr6 155790199 155790583 -33488971 - MSTA LTR MaLR -1 427 1 205 373 20 0 chr6 155790861 155790963 -33488591 - MIR3 SINE MIR -13 195 92 22 56 0 0 chr6 155791264 155791300 -33488254 + AT_rich Low_complexity Low_complexity 1 36 0 611 269 113 72 chr6 155792228 155792618 -33486936 - MER20B DNA MER1_type -335 448 43 2562 48 0 0 chr6 155794096 155794405 -33485149 + AluY SINE Alu 1 309 -2 186 377 14 0 chr6 155796193 155796262 -33483292 + L2 LINE L2 3201 3270 -2 32 26 0 0 chr6 155796284 155796323 -33483231 + AT_rich Low_complexity Low_complexity 1 39 0 272 272 340 11 chr6 155796801 155796992 -33482562 - MIR SINE MIR -1 261 8 203 368 124 35 chr6 155797057 155797338 -33482216 + L2 LINE L2 1978 2297 -1017 351 0 0 0 chr6 155797338 155797377 -33482177 + (TA)n Simple_repeat Simple_repeat 1 39 0 203 368 124 35 chr6 155797377 155797443 -33482111 + L2 LINE L2 2297 2356 -958 3901 290 54 23 chr6 155797570 155799197 -33480357 + ERVL LTR ERVL 3294 5039 -528 27 87 0 0 chr6 155799197 155799266 -33480288 + AT_rich Low_complexity Low_complexity 1 69 0 675 319 72 20 chr6 155799277 155799734 -33479820 + ERVL LTR ERVL 5048 5528 -236 323 230 130 43 chr6 155799977 155800138 -33479416 + LTR41 LTR ERVL 21 195 -578 292 145 58 43 chr6 155800723 155800792 -33478762 + L1MEc LINE L1 1887 1956 -4440 284 290 114 23 chr6 155801290 155801466 -33478088 + L1MEc LINE L1 2456 2647 -3568 787 304 65 23 chr6 155801476 155802075 -33477479 - L1M4 LINE L1 -2107 4039 3416 2310 103 0 0 chr6 155802188 155802498 -33477056 - AluSg SINE Alu 0 310 1 369 238 38 9 chr6 155802538 155802643 -33476911 - L1M4 LINE L1 -3159 2987 2880 310 293 0 0 chr6 155802719 155802801 -33476753 - L1ME3 LINE L1 -83 6079 5998 831 271 56 4 chr6 155802826 155803095 -33476459 - L1ME3 LINE L1 -253 5909 5627 425 356 80 22 chr6 155803162 155803810 -33475744 - L1M4 LINE L1 -3344 2802 2117 10030 217 75 29 chr6 155803825 155804987 -33474567 - Charlie6 DNA MER1_type -6 3494 2388 1858 169 0 26 chr6 155804987 155805295 -33474259 - AluJb SINE Alu -12 300 1 10030 217 75 29 chr6 155805295 155805826 -33473728 - Charlie6 DNA MER1_type -1112 2388 1883 531 0 0 0 chr6 155805826 155805885 -33473669 + (TG)n Simple_repeat Simple_repeat 1 59 0 10030 217 75 29 chr6 155805885 155807054 -33472500 - Charlie6 DNA MER1_type -1617 1883 497 233 152 0 0 chr6 155807159 155807192 -33472362 + MLT1G1 LTR MaLR 1 33 -562 2340 170 9 19 chr6 155807473 155807903 -33471651 - MSTB LTR MaLR 0 426 1 25 0 0 0 chr6 155807926 155807951 -33471603 + AT_rich Low_complexity Low_complexity 1 25 0 1362 195 23 87 chr6 155808007 155808397 -33471157 - MLT1A1 LTR MaLR 0 365 1 1431 133 137 23 chr6 155810620 155810907 -33468647 + AluSx SINE Alu 1 316 0 31 44 0 0 chr6 155811886 155811931 -33467623 + AT_rich Low_complexity Low_complexity 1 45 0 2321 243 34 22 chr6 155812931 155813574 -33465980 + MER82 DNA MER2_type 1 651 -2 458 230 224 7 chr6 155813786 155813938 -33465616 - MER5A DNA MER1_type -4 185 1 21 36 0 0 chr6 155814484 155814512 -33465042 + AT_rich Low_complexity Low_complexity 1 28 0 282 253 13 0 chr6 155814542 155814621 -33464933 + Charlie7 DNA MER1_type 397 476 -2136 608 287 46 0 chr6 155814749 155814944 -33464610 + Charlie7 DNA MER1_type 1403 1606 -1006 350 331 46 13 chr6 155815234 155815385 -33464169 + MIR SINE MIR 16 171 -91 21 0 0 0 chr6 155816053 155816074 -33463480 + AT_rich Low_complexity Low_complexity 1 21 0 455 343 48 19 chr6 155816721 155816799 -33462755 - MIR SINE MIR -32 230 156 2061 212 79 30 chr6 155816799 155817294 -33462260 - MLT2B1 LTR ERVL 0 520 2 455 343 48 19 chr6 155817294 155817425 -33462129 - MIR SINE MIR -106 156 15 284 292 0 14 chr6 155817468 155817540 -33462014 + L2 LINE L2 3243 3313 0 218 176 20 20 chr6 155817799 155817850 -33461704 + T-rich Low_complexity Low_complexity 4 54 0 21 71 0 0 chr6 155819707 155819749 -33459805 + AT_rich Low_complexity Low_complexity 1 42 0 198 333 261 0 chr6 155819947 155820112 -33459442 + L2 LINE L2 1982 2189 -1125 * 288 306 61 41 chr6 155820111 155820258 -33459296 + MIR SINE MIR 81 230 -32 1658 283 28 0 chr6 155820309 155820737 -33458817 + L2 LINE L2 2188 2627 -687 411 252 133 7 chr6 155820757 155820892 -33458662 + MER5C DNA MER1_type 173 324 0 282 288 59 30 chr6 155821012 155821296 -33458258 - L1MC5 LINE L1 0 8042 7636 31 68 0 0 chr6 155821426 155821485 -33458069 + AT_rich Low_complexity Low_complexity 1 59 0 304 302 87 46 chr6 155823006 155823174 -33456380 + MIR SINE MIR 2 170 -65 1532 175 41 10 chr6 155823275 155823566 -33455988 - AluJb SINE Alu -6 306 7 225 0 0 0 chr6 155823572 155823597 -33455957 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 2107 110 20 0 chr6 155823599 155823891 -33455663 - AluSx SINE Alu -12 300 3 3727 65 83 18 chr6 155824161 155824704 -33454850 + MER4E LTR ERV1 1 578 -188 594 0 0 0 chr6 155824704 155824775 -33454779 - AluY SINE Alu -13 299 229 335 308 132 11 chr6 155824777 155824959 -33454595 - L1ME3A LINE L1 -285 6279 6076 36 23 0 0 chr6 155825853 155825896 -33453658 + AT_rich Low_complexity Low_complexity 1 43 0 316 250 94 33 chr6 155825919 155826163 -33453391 - L1ME3A LINE L1 -1617 4923 4665 23 33 0 0 chr6 155826207 155826237 -33453317 + AT_rich Low_complexity Low_complexity 1 30 0 1104 235 52 42 chr6 155826342 155826620 -33452934 + AluJb SINE Alu 1 284 -28 410 0 20 0 chr6 155826620 155826670 -33452884 + (CA)n Simple_repeat Simple_repeat 2 52 0 1104 235 52 42 chr6 155826670 155826697 -33452857 + AluJb SINE Alu 284 309 -3 1856 142 56 0 chr6 155826789 155827077 -33452477 - AluSx SINE Alu -8 304 1 442 247 151 58 chr6 155827104 155827363 -33452191 - L1ME3A LINE L1 -2190 4350 4068 876 314 118 52 chr6 155827377 155828145 -33451409 - L1ME3A LINE L1 -2563 3977 3103 2204 92 3 0 chr6 155828145 155828440 -33451114 - AluSg SINE Alu -12 298 3 876 314 118 52 chr6 155828440 155828837 -33450717 - L1ME3A LINE L1 -3437 3103 2734 347 303 19 32 chr6 155828957 155829112 -33450442 - L1ME3A LINE L1 -3973 2567 2415 2260 92 0 16 chr6 155829173 155829489 -33450065 - AluY SINE Alu 0 311 1 420 295 80 53 chr6 155829696 155830109 -33449445 - L1ME3A LINE L1 -4445 2095 1672 2198 88 7 0 chr6 155830133 155830447 -33449107 + AluSp SINE Alu 1 316 0 322 252 163 0 chr6 155830790 155830937 -33448617 - L1ME3A LINE L1 -5947 583 413 272 179 21 42 chr6 155831789 155831884 -33447670 + (TATAA)n Simple_repeat Simple_repeat 2 94 0 383 293 46 6 chr6 155832356 155832530 -33447024 + L1MC4a LINE L1 5724 5904 -1904 23 33 0 0 chr6 155832577 155832607 -33446947 + AT_rich Low_complexity Low_complexity 1 30 0 528 216 0 0 chr6 155832685 155832801 -33446753 - L1PA15 LINE L1 -6 6159 6044 * 23324 46 0 0 chr6 155832791 155836511 -33443043 + L1PA5 LINE L1 2423 6150 -4 414 123 74 25 chr6 155836524 155836605 -33442949 - L1P4 LINE L1 -517 5648 5564 22 0 0 0 chr6 155936725 155936747 -33342807 + AT_rich Low_complexity Low_complexity 1 22 0 37 23 0 0 chr6 155937245 155937289 -33342265 + AT_rich Low_complexity Low_complexity 1 44 0 287 331 33 8 chr6 155938129 155938371 -33341183 - L1M4 LINE L1 -3460 2686 2439 2276 108 32 32 chr6 155938481 155938859 -33340695 - L1PA11 LINE L1 -5 6169 5792 310 193 0 0 chr6 155939190 155939247 -33340307 - Ricksha DNA DNA -2342 904 848 1810 223 33 67 chr6 155939292 155939813 -33339741 - MLT2B3 LTR ERVL -46 508 6 1476 235 114 40 chr6 155940028 155940624 -33338930 - LTR48B LTR ERV1 -2 642 3 418 228 0 22 chr6 155940744 155940836 -33338718 + MER21B LTR ERV1 1 90 -773 2150 264 47 39 chr6 155940986 155941354 -33338200 + MER21B LTR ERV1 98 476 -387 2229 119 0 0 chr6 155941354 155941649 -33337905 + AluSq SINE Alu 1 295 -18 2150 264 47 39 chr6 155941649 155941955 -33337599 + MER21B LTR ERV1 476 778 -85 326 189 0 0 chr6 155941985 155942038 -33337516 + L2 LINE L2 3190 3242 -71 4299 162 18 1 chr6 155942361 155943071 -33336483 - MER72 LTR ERV1 0 722 1 1775 166 27 14 chr6 155943438 155943734 -33335820 + AluSx SINE Alu 1 300 -12 212 281 0 0 chr6 155943819 155943876 -33335678 + (TA)n Simple_repeat Simple_repeat 1 57 0 1812 171 0 23 chr6 155943889 155944193 -33335361 - AluJb SINE Alu -15 297 1 1857 218 36 69 chr6 155944247 155944840 -33334714 - MLT2B3 LTR ERVL 0 520 8 200 35 35 0 chr6 155945977 155946006 -33333548 + (CAA)n Simple_repeat Simple_repeat 2 31 0 347 115 213 0 chr6 155946319 155946380 -33333174 + MER39B LTR ERV1 1 74 -579 * 1580 174 67 25 chr6 155946378 155946416 -33333138 + MER39 LTR ERV1 379 414 -293 3911 188 33 46 chr6 155946416 155947331 -33332223 + MER4D LTR ERV1 1 903 0 1580 174 67 25 chr6 155947331 155947608 -33331946 + MER39 LTR ERV1 414 707 0 401 261 123 35 chr6 155947701 155947904 -33331650 + L1ME3A LINE L1 5945 6165 -5 43 71 0 0 chr6 155948276 155948361 -33331193 + AT_rich Low_complexity Low_complexity 1 85 0 1382 214 51 7 chr6 155948565 155948841 -33330713 - AluJo SINE Alu -22 290 3 675 159 0 41 chr6 155949008 155949055 -33330499 - L1MA9 LINE L1 -6 6306 6259 2247 108 0 0 chr6 155949055 155949343 -33330211 + AluSc SINE Alu 1 288 -21 216 0 0 0 chr6 155949343 155949367 -33330187 + (TA)n Simple_repeat Simple_repeat 2 25 0 675 159 0 41 chr6 155949367 155949463 -33330091 - L1MA9 LINE L1 -51 6261 6168 2626 142 21 30 chr6 155949464 155949930 -33329624 - LTR29 LTR ERV1 -1 621 160 336 289 67 0 chr6 155949950 155950054 -33329500 - MER34 LTR ERV1 -431 111 1 1603 118 12 103 chr6 155950070 155950399 -33329155 - L1MA9 LINE L1 -153 6159 5861 3591 156 32 0 chr6 155950401 155950985 -33328569 + LTR26 LTR ERV1 1 603 0 225 0 0 0 chr6 155951587 155951612 -33327942 + (T)n Simple_repeat Simple_repeat 1 25 0 14095 65 5 1 chr6 155952057 155953889 -33325665 - HERVH LTR ERV1 -1394 6319 4481 * 25320 97 52 11 chr6 155953888 155957724 -33321830 - HERVH LTR ERV1 -3722 3991 1 2681 80 120 0 chr6 155957726 155958126 -33321428 - LTR7 LTR ERV1 -2 448 1 2067 175 69 21 chr6 155958128 155958562 -33320992 + MER66B LTR ERV1 32 486 0 785 252 37 0 chr6 155958562 155958780 -33320774 - L1MD3 LINE L1 -153 7842 7617 282 171 0 0 chr6 155959188 155959258 -33320296 + (CATTC)n Simple_repeat Simple_repeat 1 70 0 1502 206 0 31 chr6 155959343 155959634 -33319920 + AluJo SINE Alu 1 282 -30 189 0 0 0 chr6 155959652 155959673 -33319881 + (CAA)n Simple_repeat Simple_repeat 2 22 0 2325 149 17 27 chr6 155959969 155960379 -33319175 + Tigger2a DNA MER2_type 1 406 -28 306 258 105 40 chr6 155960832 155960956 -33318598 - L2 LINE L2 0 3313 3182 25 0 0 0 chr6 155961562 155961587 -33317967 + AT_rich Low_complexity Low_complexity 1 25 0 184 222 0 0 chr6 155961852 155961897 -33317657 + L2 LINE L2 3163 3207 -106 505 311 53 0 chr6 155962540 155962691 -33316863 + MIR SINE MIR 1 159 -103 214 239 0 0 chr6 155962942 155962988 -33316566 + L2 LINE L2 3268 3313 0 180 179 0 0 chr6 155963811 155963850 -33315704 + (TA)n Simple_repeat Simple_repeat 1 39 0 1793 260 82 46 chr6 155964644 155965497 -33314057 + Zaphod DNA AcHobo 53 936 -3095 1077 245 86 5 chr6 155965506 155965878 -33313676 + Zaphod DNA AcHobo 3596 3997 -34 1950 321 150 34 chr6 155965911 155967428 -33312126 + L2 LINE L2 337 2028 -1286 629 311 38 66 chr6 155967439 155967928 -33311626 + L2 LINE L2 2737 3210 -103 4036 235 55 69 chr6 155968035 155969298 -33310256 + L1MC3 LINE L1 6151 7387 -398 1966 137 10 0 chr6 155969298 155969605 -33309949 + AluSx SINE Alu 1 310 -2 4036 235 55 69 chr6 155969605 155969985 -33309569 + L1MC3 LINE L1 7387 7771 -14 404 225 77 71 chr6 155970048 155970230 -33309324 + L1MC2 LINE L1 3074 3256 -2890 688 256 33 8 chr6 155970232 155970474 -33309080 + L1MC2 LINE L1 4801 5048 -1098 1219 169 50 117 chr6 155970475 155970930 -33308624 + L1ME1 LINE L1 5561 5985 -181 23 33 0 0 chr6 155970982 155971012 -33308542 + AT_rich Low_complexity Low_complexity 1 30 0 194 62 31 0 chr6 155971484 155971516 -33308038 + (TAAAA)n Simple_repeat Simple_repeat 4 36 0 3404 143 0 2 chr6 155971571 155972067 -33307487 - MER1A DNA MER1_type 0 529 35 226 244 0 0 chr6 155972384 155972429 -33307125 - L2 LINE L2 -3 3269 3225 668 195 13 47 chr6 155973089 155973238 -33306316 - MLT1D LTR MaLR 0 505 362 445 219 0 0 chr6 155973234 155973316 -33306238 - MLT1D LTR MaLR -423 82 1 * 3212 172 20 28 chr6 155973338 155974052 -33305502 + L1MC2 LINE L1 5198 5907 -437 412 167 0 0 chr6 155974054 155974120 -33305434 + U4 snRNA snRNA 3 68 -77 777 323 32 42 chr6 155974316 155974719 -33304835 + MLT1I LTR MaLR 3 401 -8 6230 58 25 0 chr6 155975740 155975765 -33303789 - L1PA8A LINE L1 -1 6130 6107 193 29 29 29 chr6 155975765 155975800 -33303754 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 6230 58 25 0 chr6 155975800 155976422 -33303132 - L1PA8A LINE L1 -24 6107 5468 1950 98 0 11 chr6 155976422 155976688 -33302866 - AluSc SINE Alu -15 294 32 6230 58 25 0 chr6 155976688 155977012 -33302542 - L1PA8A LINE L1 -663 5468 5153 530 154 56 0 chr6 155977230 155977373 -33302181 + (TATATG)n Simple_repeat Simple_repeat 4 154 0 657 126 0 0 chr6 155978225 155978320 -33301234 + THE1-int LTR MaLR 822 916 -664 243 277 0 0 chr6 155978304 155978387 -33301167 + L1MC4 LINE L1 6621 6703 -1339 * 250 109 0 0 chr6 155978411 155978457 -33301097 + LTR66 LTR ERVL 394 439 -171 582 219 45 7 chr6 155978643 155978798 -33300756 + L1MC3 LINE L1 7624 7784 -1 218 321 0 12 chr6 155978853 155978937 -33300617 + (CATATA)n Simple_repeat Simple_repeat 3 85 0 252 265 0 82 chr6 155978937 155979035 -33300519 - L1MC4 LINE L1 -1339 6703 6614 252 175 0 18 chr6 155979023 155979080 -33300474 + L1MC4 LINE L1 6648 6703 -1339 2693 217 75 11 chr6 155979144 155979864 -33299690 - L1MC3 LINE L1 -1 7784 7019 2565 99 3 0 chr6 155979864 155980206 -33299348 + THE1A LTR MaLR 13 355 0 10419 101 25 19 chr6 155980206 155981776 -33297778 + THE1A-int LTR MaLR 1 1580 0 2479 122 6 0 chr6 155981776 155982129 -33297425 + THE1A LTR MaLR 1 355 0 362 184 126 0 chr6 155982144 155982231 -33297323 - L1MC3 LINE L1 -792 6993 6896 759 337 102 29 chr6 155982317 155983279 -33296275 + L2 LINE L2 2227 3313 0 21 36 0 0 chr6 155983434 155983462 -33296092 + AT_rich Low_complexity Low_complexity 1 28 0 566 281 61 23 chr6 155983881 155984218 -33295336 + L1ME3A LINE L1 5532 5883 -287 186 43 0 0 chr6 155984270 155984293 -33295261 + (CA)n Simple_repeat Simple_repeat 2 24 0 559 290 63 26 chr6 155984329 155984632 -33294922 + L1ME3A LINE L1 9 322 -6220 2534 260 91 58 chr6 155984714 155985914 -33293640 + L1ME3A LINE L1 452 1690 -4852 233 313 77 12 chr6 155986162 155986419 -33293135 + L1MC/D LINE L1 5324 5594 -2214 451 270 60 59 chr6 155986531 155986868 -33292686 + L1ME3A LINE L1 2436 2828 -3932 2397 297 112 25 chr6 155986871 155988959 -33290595 + L1ME3A LINE L1 2864 5169 -1475 405 0 0 0 chr6 155988959 155989004 -33290550 + (TG)n Simple_repeat Simple_repeat 1 45 0 2397 297 112 25 chr6 155989004 155989205 -33290349 + L1ME3A LINE L1 5169 5351 -1293 444 294 43 43 chr6 155989234 155989561 -33289993 + L1ME3A LINE L1 5473 5799 -845 1010 272 100 54 chr6 155989571 155989821 -33289733 + L1ME3A LINE L1 5897 6134 -534 2262 49 0 3 chr6 155989821 155990108 -33289446 + L1PA4 LINE L1 5870 6155 0 1010 272 100 54 chr6 155990108 155990519 -33289035 + L1ME3A LINE L1 6134 6588 -80 204 313 50 20 chr6 155990699 155990798 -33288756 - L2 LINE L2 -1089 2225 2124 187 286 107 0 chr6 155991488 155991544 -33288010 + L2 LINE L2 3194 3255 -17 258 269 171 40 chr6 155991552 155991727 -33287827 - MLT1J LTR MaLR -4 507 310 290 114 0 0 chr6 155991987 155992031 -33287523 - MLT2B3 LTR ERVL -8 546 503 498 136 0 0 chr6 155992031 155992112 -33287442 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 1882 222 73 22 chr6 155992112 155992620 -33286934 - MLT2B3 LTR ERVL -20 534 1 272 239 30 0 chr6 155992620 155992687 -33286867 + CT-rich Low_complexity Low_complexity 3 71 0 26 50 0 0 chr6 155992998 155993038 -33286516 + AT_rich Low_complexity Low_complexity 1 40 0 180 77 0 0 chr6 155993434 155993460 -33286094 + (CA)n Simple_repeat Simple_repeat 2 27 0 238 320 179 19 chr6 155993663 155993819 -33285735 - L1ME3A LINE L1 -38 6132 5952 2214 76 13 0 chr6 155994060 155994363 -33285191 - AluY SINE Alu -4 307 1 1531 188 6 41 chr6 155995247 155995567 -33283987 + AluJb SINE Alu 1 309 -3 1982 149 0 0 chr6 155995882 155996184 -33283370 + AluSx SINE Alu 3 304 -8 26 0 0 0 chr6 155996184 155996210 -33283344 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr6 155996354 155996379 -33283175 + AT_rich Low_complexity Low_complexity 1 25 0 237 267 12 0 chr6 155997447 155997533 -33282021 + L1ME LINE L1 5795 5881 -240 763 241 59 103 chr6 155998204 155998728 -33280826 + L1ME2 LINE L1 5663 6163 -1 825 276 93 30 chr6 155998766 155999327 -33280227 + L1ME2 LINE L1 4630 5225 -921 261 0 0 0 chr6 155999337 155999366 -33280188 + (TG)n Simple_repeat Simple_repeat 2 30 0 315 196 34 34 chr6 155999366 155999509 -33280045 + (TA)n Simple_repeat Simple_repeat 2 144 0 241 159 36 22 chr6 155999576 155999714 -33279840 + (TA)n Simple_repeat Simple_repeat 2 141 0 228 67 0 0 chr6 155999784 155999814 -33279740 + (TA)n Simple_repeat Simple_repeat 1 30 0 1041 291 81 14 chr6 155999827 156000311 -33279243 + L1ME2 LINE L1 5255 5770 -394 2294 177 70 7 chr6 156000313 156000742 -33278812 + LOR1b LTR ERV1 6 461 0 576 280 22 27 chr6 156000850 156001075 -33278479 + L1ME2 LINE L1 5932 6155 -9 672 250 6 19 chr6 156001285 156001441 -33278113 - FRAM SINE Alu -9 167 14 3063 148 12 4 chr6 156002071 156002564 -33276990 - LOR1a LTR ERV1 0 497 1 594 125 0 0 chr6 156002567 156002655 -33276899 - LOR1a-int LTR ERV1 -2 8118 8031 7787 122 46 9 chr6 156002656 156003944 -33275610 - LOR1a-int LTR ERV1 -2057 6063 4729 * 12655 123 64 23 chr6 156003940 156006142 -33273412 - LOR1a-int LTR ERV1 -3889 4231 1940 9478 138 32 11 chr6 156006141 156008068 -33271486 - LOR1a-int LTR ERV1 -6323 1797 13 * 2883 111 78 2 chr6 156008070 156008529 -33271025 - LOR1a LTR ERV1 -3 494 1 200 220 0 0 chr6 156009470 156009529 -33270025 - MER5C DNA MER1_type -52 272 214 496 246 34 0 chr6 156009559 156009677 -33269877 - MER5C DNA MER1_type -202 122 1 468 255 25 28 chr6 156009746 156009892 -33269662 + MER63A DNA MER1_type 34 182 -28 303 96 0 0 chr6 156010225 156010277 -33269277 + (T)n Simple_repeat Simple_repeat 1 52 0 346 358 43 14 chr6 156010277 156010484 -33269070 - MIR SINE MIR -34 228 16 190 292 56 0 chr6 156010650 156010722 -33268832 + MIR SINE MIR 74 149 -113 27 49 0 0 chr6 156010824 156010865 -33268689 + AT_rich Low_complexity Low_complexity 1 41 0 446 351 60 4 chr6 156011955 156012206 -33267348 - LTR33 LTR ERVL -243 278 14 341 152 38 25 chr6 156013241 156013320 -33266234 + MADE1 DNA Mariner 1 80 0 490 306 30 19 chr6 156014697 156014965 -33264589 - L1 LINE L1 -2579 3567 3297 659 212 17 63 chr6 156014987 156015289 -33264265 - L1 LINE L1 -2978 3168 2881 6884 175 132 26 chr6 156015304 156016850 -33262704 - MER52A LTR ERV1 0 1755 46 197 311 0 66 chr6 156018585 156018646 -33260908 + L2 LINE L2 3199 3255 -17 216 283 33 0 chr6 156018881 156018941 -33260613 + L2 LINE L2 3206 3267 -5 191 195 11 58 chr6 156019197 156019284 -33260270 + GA-rich Low_complexity Low_complexity 2 84 0 2539 122 0 5 chr6 156020589 156020957 -33258597 - THE1C LTR MaLR -9 366 1 245 159 0 29 chr6 156022113 156022182 -33257372 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 12662 139 12 12 chr6 156022242 156023042 -33256512 + Tigger1 DNA MER2_type 1 800 -1618 2817 154 39 49 chr6 156023042 156023471 -33256083 + MER4B LTR ERV1 1 424 -186 1972 135 7 7 chr6 156023471 156023775 -33255779 - AluSg1 SINE Alu -5 304 1 2817 154 39 49 chr6 156023775 156023957 -33255597 + MER4B LTR ERV1 424 606 -4 12662 139 12 12 chr6 156023957 156025191 -33254363 + Tigger1 DNA MER2_type 800 2034 -384 2172 112 3 6 chr6 156025191 156025504 -33254050 + AluSx SINE Alu 1 312 0 12662 139 12 12 chr6 156025504 156025887 -33253667 + Tigger1 DNA MER2_type 2034 2416 -2 378 406 41 9 chr6 156025919 156026239 -33253315 - MER115 DNA AcHobo -80 613 284 1451 249 12 0 chr6 156026264 156026590 -33252964 + L1MDa LINE L1 69 398 -6142 290 294 114 30 chr6 156026783 156026984 -33252570 - MLT1L LTR MaLR -184 431 214 198 0 0 0 chr6 156027436 156027458 -33252096 + (TA)n Simple_repeat Simple_repeat 2 23 0 354 23 0 0 chr6 156027460 156027503 -33252051 + (GA)n Simple_repeat Simple_repeat 2 44 0 28 48 0 0 chr6 156028282 156028324 -33251230 + AT_rich Low_complexity Low_complexity 1 42 0 277 314 24 8 chr6 156028520 156028644 -33250910 - L1MEc LINE L1 -4761 1549 1424 363 267 11 45 chr6 156028739 156028915 -33250639 - L1MEc LINE L1 -4862 1257 1088 21 0 0 0 chr6 156029082 156029103 -33250451 + AT_rich Low_complexity Low_complexity 1 21 0 43 47 0 0 chr6 156029336 156029400 -33250154 + AT_rich Low_complexity Low_complexity 1 64 0 294 295 105 0 chr6 156029408 156029503 -33250051 + MIR3 SINE MIR 87 191 -17 32 26 0 0 chr6 156029785 156029824 -33249730 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 156029884 156029905 -33249649 + AT_rich Low_complexity Low_complexity 1 21 0 2414 78 0 0 chr6 156030813 156031121 -33248433 - AluY SINE Alu -3 308 1 1907 148 3 0 chr6 156031504 156031832 -33247722 - AluSq SINE Alu 0 329 1 892 183 23 6 chr6 156032300 156032475 -33247079 + MER2 DNA MER2_type 33 210 -135 392 263 0 0 chr6 156032501 156032577 -33246977 + MER2 DNA MER2_type 269 344 -1 29 28 0 0 chr6 156032774 156032810 -33246744 + AT_rich Low_complexity Low_complexity 1 36 0 6136 109 6 1 chr6 156032821 156033784 -33245770 - L1PA10 LINE L1 -20 6148 5182 454 193 0 0 chr6 156033778 156033861 -33245693 + L1P LINE L1 4148 4230 -1916 * 31 26 0 0 chr6 156033864 156033902 -33245652 + AT_rich Low_complexity Low_complexity 1 38 0 1110 107 24 139 chr6 156033932 156034184 -33245370 + AluSg/x SINE Alu 84 306 -6 5979 109 9 17 chr6 156034193 156035139 -33244415 + L1P LINE L1 4241 5179 -967 347 255 19 19 chr6 156035317 156035507 -33244047 + (CATA)n Simple_repeat Simple_repeat 1 190 0 349 318 282 0 chr6 156035537 156035732 -33243822 + MIR SINE MIR 13 262 0 636 144 0 0 chr6 156035781 156035878 -33243676 - FRAM SINE Alu -21 155 59 202 29 57 0 chr6 156036582 156036617 -33242937 + (TA)n Simple_repeat Simple_repeat 1 37 0 4168 125 8 42 chr6 156036661 156037192 -33242362 + L1MA3 LINE L1 5609 6111 -194 2001 134 0 0 chr6 156037192 156037482 -33242072 + AluSq SINE Alu 1 290 -23 4168 125 8 42 chr6 156037482 156037671 -33241883 + L1MA3 LINE L1 6111 6305 0 1588 228 3 19 chr6 156037724 156038049 -33241505 - MLT1A1 LTR MaLR -19 346 27 204 125 0 0 chr6 156038078 156038110 -33241444 + (CA)n Simple_repeat Simple_repeat 1 32 0 1947 176 62 43 chr6 156038689 156039109 -33240445 - MSTC LTR MaLR 0 428 1 25 31 0 0 chr6 156039206 156039238 -33240316 + AT_rich Low_complexity Low_complexity 1 32 0 370 74 0 0 chr6 156039238 156039292 -33240262 - AluSq/x SINE Alu -169 133 80 1074 146 0 0 chr6 156039325 156039685 -33239869 + (TA)n Simple_repeat Simple_repeat 1 360 0 242 198 37 0 chr6 156039759 156039840 -33239714 + (TA)n Simple_repeat Simple_repeat 1 84 0 182 36 0 36 chr6 156039843 156039871 -33239683 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 264 30 0 0 chr6 156039881 156039914 -33239640 + (GA)n Simple_repeat Simple_repeat 2 34 0 561 355 74 40 chr6 156040033 156040560 -33238994 - L2 LINE L2 -340 2974 2430 24 67 0 0 chr6 156040711 156040756 -33238798 + AT_rich Low_complexity Low_complexity 1 45 0 264 253 51 0 chr6 156041694 156041773 -33237781 + L1MB1 LINE L1 6085 6167 -1 318 277 95 15 chr6 156042156 156042293 -33237261 + L1M4 LINE L1 3797 3944 -2202 5507 150 37 2 chr6 156042320 156043216 -33236338 + L1PA11 LINE L1 4376 5314 -854 1955 133 17 10 chr6 156043216 156043518 -33236036 + AluSx SINE Alu 3 306 -6 5507 150 37 2 chr6 156043518 156043702 -33235852 + L1PA11 LINE L1 5314 5490 -678 2579 34 3 0 chr6 156043701 156044021 -33235533 - L1P LINE L1 -1092 5054 4734 * 7253 36 11 0 chr6 156044021 156045071 -33234483 + L1PA4 LINE L1 5090 6149 -6 192 110 85 12 chr6 156045077 156045136 -33234418 + (TAAA)n Simple_repeat Simple_repeat 1 69 -19 4455 117 28 0 chr6 156045136 156045813 -33233741 + L1PA11 LINE L1 5476 6171 -3 192 110 85 12 chr6 156045813 156045835 -33233719 + (TAAA)n Simple_repeat Simple_repeat 69 88 0 414 335 6 11 chr6 156045835 156046017 -33233537 + L1ME3A LINE L1 5567 5747 -423 341 213 62 0 chr6 156046027 156046107 -33233447 - MER58 DNA MER1_type -76 265 181 404 196 18 27 chr6 156046152 156046264 -33233290 + L1ME3A LINE L1 5800 5910 -260 4119 200 43 32 chr6 156046265 156046716 -33232838 + L1MC3 LINE L1 6745 7189 -596 1598 87 0 9 chr6 156046716 156046966 -33232588 + AluSg/x SINE Alu 94 310 0 4119 200 43 32 chr6 156046966 156047527 -33232027 + L1MC3 LINE L1 7189 7769 -16 366 279 70 47 chr6 156047644 156047816 -33231738 + L1ME3A LINE L1 5965 6140 -30 1488 172 65 21 chr6 156047821 156048111 -33231443 + L1MC3 LINE L1 7130 7432 -353 545 82 41 0 chr6 156048125 156048222 -33231332 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 204 40 0 0 chr6 156048610 156048635 -33230919 + (A)n Simple_repeat Simple_repeat 1 25 0 30 59 0 0 chr6 156048951 156049002 -33230552 + AT_rich Low_complexity Low_complexity 1 51 0 320 75 0 19 chr6 156049025 156049078 -33230476 + (GA)n Simple_repeat Simple_repeat 2 53 0 249 143 48 0 chr6 156049080 156049122 -33230432 - Alu SINE Alu -15 286 243 642 334 163 38 chr6 156049541 156050580 -33228974 - L2 LINE L2 -975 2339 1171 27 49 0 0 chr6 156051410 156051451 -33228103 + AT_rich Low_complexity Low_complexity 1 41 0 14131 200 15 3 chr6 156052075 156055386 -33224168 + L1P5 LINE L1 2619 5968 -894 707 130 0 0 chr6 156055378 156055486 -33224068 + L1P5 LINE L1 6390 6497 -370 * 447 177 15 73 chr6 156055508 156056009 -33223545 + (TA)n Simple_repeat Simple_repeat 1 471 0 268 260 0 0 chr6 156056020 156056093 -33223461 + L1MC4 LINE L1 6614 6686 -1356 2286 139 3 5 chr6 156056093 156056467 -33223087 + L1PB1 LINE L1 5777 6149 -2 2502 161 9 4 chr6 156058392 156058874 -33220680 - MER1A DNA MER1_type 0 529 4 273 119 0 0 chr6 156059167 156059209 -33220345 + (TG)n Simple_repeat Simple_repeat 1 42 0 22 0 0 0 chr6 156059378 156059400 -33220154 + AT_rich Low_complexity Low_complexity 1 22 0 233 123 0 35 chr6 156060113 156060170 -33219384 + (TAAAA)n Simple_repeat Simple_repeat 1 55 0 288 198 18 18 chr6 156060300 156060411 -33219143 + CT-rich Low_complexity Low_complexity 3 113 0 2463 78 0 0 chr6 156061047 156061353 -33218201 + AluY SINE Alu 1 306 -5 21 0 0 0 chr6 156061439 156061460 -33218094 + AT_rich Low_complexity Low_complexity 1 21 0 571 329 36 13 chr6 156062638 156062863 -33216691 + MIR SINE MIR 20 249 -13 6868 255 60 47 chr6 156064718 156066459 -33213095 + L1MC/D LINE L1 3 1720 -4844 186 43 0 0 chr6 156066459 156066482 -33213072 + (GAA)n Simple_repeat Simple_repeat 2 24 0 6868 255 60 47 chr6 156066482 156070029 -33209525 + L1MC/D LINE L1 1720 5593 -971 724 194 72 33 chr6 156070037 156070217 -33209337 + L1MC/D LINE L1 5877 6063 -2140 * 13617 200 35 17 chr6 156070213 156074905 -33204649 - L1MA4 LINE L1 -45 7674 2893 287 196 18 0 chr6 156074913 156074969 -33204585 - MLT1A2 LTR MaLR -317 57 1 2027 204 58 5 chr6 156075189 156075620 -33203934 + MLT2C2 LTR ERVL 3 456 -8 528 303 76 45 chr6 156075976 156076398 -33203156 + L1MEd LINE L1 11 445 -5674 694 267 91 14 chr6 156077131 156077352 -33202202 + MER8 DNA MER2_type 2 239 0 501 247 165 41 chr6 156077529 156078047 -33201507 + L1ME3A LINE L1 5561 6144 -20 217 215 15 62 chr6 156078222 156078287 -33201267 - L2 LINE L2 -18 3295 3234 387 316 59 14 chr6 156078387 156078573 -33200981 - MIR SINE MIR -47 215 23 26 0 0 0 chr6 156078736 156078762 -33200792 + AT_rich Low_complexity Low_complexity 1 26 0 518 282 81 29 chr6 156079187 156079361 -33200193 - MER5A DNA MER1_type 0 189 7 49 52 0 0 chr6 156079928 156080005 -33199549 + AT_rich Low_complexity Low_complexity 1 77 0 32 0 0 0 chr6 156080208 156080240 -33199314 + AT_rich Low_complexity Low_complexity 1 32 0 250 270 45 0 chr6 156080580 156080669 -33198885 - L1MC4 LINE L1 -1336 6706 6614 * 254 250 0 22 chr6 156080597 156080689 -33198865 + L1MC4 LINE L1 6614 6703 -1339 235 336 18 0 chr6 156080685 156080798 -33198756 - L1MC4 LINE L1 -1339 6703 6589 * 635 329 75 40 chr6 156081322 156081896 -33197658 + L1M4 LINE L1 2680 3273 -2873 23 101 0 0 chr6 156081910 156081989 -33197565 + AT_rich Low_complexity Low_complexity 1 79 0 335 250 62 23 chr6 156082237 156082365 -33197189 + L1M4 LINE L1 3712 3844 -2302 397 260 0 0 chr6 156082762 156082862 -33196692 + L1MD3 LINE L1 7896 7995 0 282 266 16 0 chr6 156082865 156082929 -33196625 + L2 LINE L2 3249 3313 0 443 252 0 27 chr6 156083042 156083153 -33196401 + MLT1A1 LTR MaLR 38 145 -220 292 278 14 0 chr6 156083245 156083317 -33196237 + MLT1A1 LTR MaLR 72 144 -221 4242 180 14 29 chr6 156083327 156083861 -33195693 - L1MA7 LINE L1 -2 6289 5772 2179 104 7 0 chr6 156083861 156084148 -33195406 - AluSc SINE Alu -20 289 1 4242 180 14 29 chr6 156084148 156084512 -33195042 - L1MA7 LINE L1 -519 5772 5404 2363 200 22 8 chr6 156084534 156085044 -33194510 - L1MA7 LINE L1 -961 5185 4669 354 23 0 0 chr6 156085044 156085087 -33194467 + (TG)n Simple_repeat Simple_repeat 1 43 0 1079 232 9 4 chr6 156085093 156085326 -33194228 + MLT1A1 LTR MaLR 132 365 0 2849 181 73 65 chr6 156085420 156086101 -33193453 + MER44D DNA MER2_type 13 699 -6 243 215 54 0 chr6 156086107 156086200 -33193354 + (TA)n Simple_repeat Simple_repeat 1 98 0 22 0 0 0 chr6 156086402 156086424 -33193130 + AT_rich Low_complexity Low_complexity 1 22 0 401 250 9 0 chr6 156086723 156086839 -33192715 - MER53 DNA DNA -50 139 23 308 310 130 21 chr6 156086862 156087146 -33192408 - L1M4 LINE L1 -1804 4342 4028 27 0 0 0 chr6 156087850 156087877 -33191677 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr6 156088066 156088090 -33191464 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 156088430 156088451 -33191103 + AT_rich Low_complexity Low_complexity 1 21 0 678 326 50 62 chr6 156089920 156090782 -33188772 + L1M3d LINE L1 30 672 -5219 1528 248 129 38 chr6 156090921 156091557 -33187997 + L1M3d LINE L1 676 1369 -4522 234 91 0 68 chr6 156091558 156091646 -33187908 + (TA)n Simple_repeat Simple_repeat 2 83 0 404 37 19 0 chr6 156091650 156091704 -33187850 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2071 186 44 12 chr6 156091708 156092489 -33187065 - L1M1 LINE L1 -655 7069 6255 * 8826 144 15 19 chr6 156092487 156094117 -33185437 - L1M1 LINE L1 -3870 3695 2072 4604 180 80 9 chr6 156094120 156094988 -33184566 - L1M1 LINE L1 -6619 946 18 738 135 35 0 chr6 156095000 156095141 -33184413 + L1 LINE L1 4264 4409 -1737 270 261 0 0 chr6 156095144 156095209 -33184345 + Tigger1 DNA MER2_type 2 66 -2352 * 320 119 15 30 chr6 156095200 156095267 -33184287 + MER57A LTR ERV1 336 401 -2 5229 169 12 7 chr6 156095267 156096183 -33183371 + Tigger1 DNA MER2_type 1498 2418 0 21 36 0 0 chr6 156096732 156096760 -33182794 + AT_rich Low_complexity Low_complexity 1 28 0 773 176 0 0 chr6 156097069 156097194 -33182360 + AluJb SINE Alu 1 125 -187 36 40 0 0 chr6 156097195 156097245 -33182309 + AT_rich Low_complexity Low_complexity 1 50 0 28 0 0 0 chr6 156099702 156099730 -33179824 + AT_rich Low_complexity Low_complexity 1 28 0 698 255 14 0 chr6 156100044 156100189 -33179365 + MER58A DNA MER1_type 2 148 0 253 171 0 0 chr6 156100189 156100221 -33179333 + MER58A DNA MER1_type 188 219 -5 4998 196 98 104 chr6 156100517 156101133 -33178421 - L1MC3 LINE L1 -8 7777 7159 340 232 32 21 chr6 156101133 156101228 -33178326 - MLT1F1 LTR MaLR -437 130 35 4998 196 98 104 chr6 156101228 156102314 -33177240 - L1MC3 LINE L1 -626 7159 5991 3048 197 79 18 chr6 156102753 156103423 -33176131 + MER50 LTR ERV1 1 711 -23 660 248 13 42 chr6 156103431 156103669 -33175885 + LTR37B LTR ERV1 238 468 0 261 260 10 10 chr6 156103712 156103812 -33175742 + A-rich Low_complexity Low_complexity 4 103 0 22 35 0 0 chr6 156104070 156104099 -33175455 + AT_rich Low_complexity Low_complexity 1 29 0 542 65 13 13 chr6 156104352 156104429 -33175125 + THE1B LTR MaLR 1 77 -287 * 1552 155 40 29 chr6 156104408 156104686 -33174868 - THE1B LTR MaLR -83 281 1 22 0 0 0 chr6 156105426 156105448 -33174106 + AT_rich Low_complexity Low_complexity 1 22 0 312 272 184 0 chr6 156105499 156105635 -33173919 + L1ME3A LINE L1 5729 5889 -281 27 49 0 0 chr6 156105664 156105705 -33173849 + AT_rich Low_complexity Low_complexity 1 41 0 23 68 0 0 chr6 156105887 156105931 -33173623 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr6 156105960 156105997 -33173557 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr6 156106885 156106915 -33172639 + AT_rich Low_complexity Low_complexity 1 30 0 354 371 68 16 chr6 156107012 156107333 -33172221 + L1ME LINE L1 5457 5794 -327 328 284 72 68 chr6 156107954 156108176 -33171378 - MLT1L LTR MaLR -25 590 368 949 175 0 6 chr6 156108699 156108865 -33170689 + FRAM SINE Alu 12 176 0 25 0 0 0 chr6 156109099 156109124 -33170430 + AT_rich Low_complexity Low_complexity 1 25 0 29 28 0 0 chr6 156109725 156109761 -33169793 + AT_rich Low_complexity Low_complexity 1 36 0 237 315 0 14 chr6 156111116 156111189 -33168365 + A-rich Low_complexity Low_complexity 3 74 0 439 231 17 34 chr6 156112296 156112413 -33167141 + MIR SINE MIR 146 260 -2 226 255 21 21 chr6 156114598 156114692 -33164862 + L1P LINE L1 3179 3272 -2874 1091 245 158 17 chr6 156114708 156115055 -33164499 + MSTD LTR MaLR 1 396 0 2101 260 50 29 chr6 156115095 156115988 -33163566 + L1ME1 LINE L1 4392 5303 -843 493 188 16 39 chr6 156115999 156116127 -33163427 + L1MB2 LINE L1 5117 5241 -905 2189 162 40 18 chr6 156116151 156116552 -33163002 + MSTB1 LTR MaLR 23 432 0 4136 170 41 48 chr6 156116567 156117487 -33162067 + L1MB2 LINE L1 5257 6170 -1 1639 245 79 70 chr6 156117504 156117766 -33161788 + L1ME1 LINE L1 5317 5575 -591 7996 87 3 1 chr6 156117766 156118835 -33160719 + MER11C LTR ERVK 1 1071 0 1639 245 79 70 chr6 156118835 156119412 -33160142 + L1ME1 LINE L1 5575 6163 -3 629 185 8 31 chr6 156119430 156119560 -33159994 + FLAM_A SINE Alu 11 137 -5 27 0 0 0 chr6 156119652 156119679 -33159875 + AT_rich Low_complexity Low_complexity 1 27 0 359 262 135 8 chr6 156121163 156121289 -33158265 + MIR SINE MIR 51 192 -70 37 0 0 0 chr6 156121486 156121523 -33158031 + AT_rich Low_complexity Low_complexity 1 37 0 1188 242 22 15 chr6 156122711 156122984 -33156570 + L1MA9 LINE L1 2 276 -6754 2653 260 48 72 chr6 156122991 156124770 -33154784 + L1MA9 LINE L1 971 2332 -4774 1674 157 38 0 chr6 156124770 156125063 -33154491 + AluSx SINE Alu 1 304 -8 2653 260 48 72 chr6 156125063 156126433 -33153121 + L1MA9 LINE L1 2332 3733 -3373 4585 179 21 68 chr6 156126437 156127604 -33151950 + L1MA9 LINE L1 4456 5568 -1538 207 69 0 0 chr6 156127635 156127664 -33151890 + (GA)n Simple_repeat Simple_repeat 2 30 0 2362 187 34 27 chr6 156127665 156128189 -33151365 + L1MA9 LINE L1 6544 7071 -201 2758 178 17 6 chr6 156128189 156128965 -33150589 - MER6 DNA MER2_type 0 865 5 958 183 5 29 chr6 156128969 156129177 -33150377 + L1MA9 LINE L1 7070 7272 0 24 32 0 0 chr6 156129217 156129248 -33150306 + AT_rich Low_complexity Low_complexity 1 31 0 234 267 106 17 chr6 156129336 156129516 -33150038 + L1ME4a LINE L1 5922 6117 -4 516 298 37 9 chr6 156129649 156129864 -33149690 - LTR16B LTR ERVL -4 460 240 37 23 0 0 chr6 156131269 156131313 -33148241 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr6 156131809 156131831 -33147723 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 156132598 156132627 -33146927 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr6 156132649 156132678 -33146876 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr6 156132833 156132875 -33146679 + AT_rich Low_complexity Low_complexity 1 42 0 851 222 63 10 chr6 156133052 156133259 -33146295 + MLT1D LTR MaLR 1 218 -287 644 71 36 0 chr6 156133277 156133389 -33146165 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 1851 194 14 22 chr6 156133410 156133775 -33145779 - MLT2D LTR ERVL -48 366 5 751 294 51 0 chr6 156133808 156134022 -33145532 + MLT1D LTR MaLR 277 501 -4 3080 190 53 84 chr6 156134022 156134702 -33144852 + L1MC1 LINE L1 5145 5845 -488 1586 99 13 4 chr6 156134702 156134934 -33144620 - AluSg/x SINE Alu -1 309 76 3080 190 53 84 chr6 156134934 156135031 -33144523 + L1MC1 LINE L1 5845 5943 -390 2059 122 31 0 chr6 156135031 156135325 -33144229 - AluSq SINE Alu -10 303 1 3080 190 53 84 chr6 156135325 156135778 -33143776 + L1MC1 LINE L1 5943 6327 -6 703 223 43 0 chr6 156135786 156135974 -33143580 + MLT1D-int LTR MaLR 47 242 -1129 3374 157 70 7 chr6 156135975 156136651 -33142903 - Tigger3(Golem) DNA MER2_type -1 3028 2311 22 0 0 0 chr6 156136809 156136831 -33142723 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 156136966 156136988 -33142566 + AT_rich Low_complexity Low_complexity 1 22 0 1598 198 42 24 chr6 156137145 156137528 -33142026 - MLT1B LTR MaLR 0 390 1 678 291 74 4 chr6 156137687 156137917 -33141637 - L1ME3A LINE L1 -1 6169 5924 525 304 16 37 chr6 156137919 156138162 -33141392 - L1ME1 LINE L1 -78 6088 5851 2102 253 59 3 chr6 156138375 156139015 -33140539 + L1ME1 LINE L1 4321 4996 -1150 1341 233 124 15 chr6 156139040 156139499 -33140055 + L1ME1 LINE L1 5654 6162 -4 470 324 104 65 chr6 156139613 156140208 -33139346 + L1M4 LINE L1 3601 4218 -1928 228 323 101 29 chr6 156140380 156140656 -33138898 + L1MEc LINE L1 1525 1820 -4576 353 331 22 48 chr6 156140946 156141204 -33138350 - LTR16A1 LTR ERVL -200 250 1 3444 261 83 64 chr6 156141245 156143864 -33135690 + L1MEc LINE L1 2156 4785 -1430 320 216 35 35 chr6 156143898 156144014 -33135540 - L1MC4 LINE L1 -4 8038 7923 252 240 0 67 chr6 156144092 156144167 -33135387 + L1ME4a LINE L1 5988 6057 -64 348 270 0 0 chr6 156144360 156144449 -33135105 + L2 LINE L2 3184 3272 0 591 233 62 11 chr6 156144618 156144794 -33134760 - LTR1 LTR ERV1 -600 185 1 384 305 39 0 chr6 156144794 156144922 -33134632 - L1ME LINE L1 -472 5694 5562 22 80 0 0 chr6 156146175 156146225 -33133329 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr6 156146801 156146825 -33132729 + AT_rich Low_complexity Low_complexity 1 24 0 646 207 12 18 chr6 156148577 156148741 -33130813 - L1MB8 LINE L1 -9 6169 6007 3454 222 37 27 chr6 156148775 156150234 -33129320 - L1MB8 LINE L1 -99 6890 5423 338 175 0 0 chr6 156150251 156150314 -33129240 - MER52A LTR ERV1 0 1755 1693 2441 204 110 82 chr6 156150314 156151732 -33127822 - MER52A LTR ERV1 -558 1197 18 5951 261 42 50 chr6 156151740 156151982 -33127572 - L1MB8 LINE L1 -1544 5413 5171 2134 144 17 0 chr6 156151982 156152328 -33127226 - L1PB3 LINE L1 -7 6147 5796 5951 261 42 50 chr6 156152328 156153263 -33126291 - L1MB8 LINE L1 -1786 5171 4230 1988 138 0 0 chr6 156153263 156153580 -33125974 - AluSx SINE Alu 0 317 1 5951 261 42 50 chr6 156153580 156155409 -33124145 - L1MB8 LINE L1 -2727 4230 2446 4346 279 66 25 chr6 156155384 156157274 -33122280 - L1MB8 LINE L1 -4885 1970 3 * 1679 222 43 108 chr6 156157535 156158117 -33121437 - MLT2B3 LTR ERVL -10 544 1 306 375 40 0 chr6 156159645 156159797 -33119757 + MIR SINE MIR 16 173 -89 2195 117 0 0 chr6 156159829 156160129 -33119425 + AluY SINE Alu 1 300 -11 21 0 0 0 chr6 156160184 156160205 -33119349 + AT_rich Low_complexity Low_complexity 1 21 0 204 191 29 73 chr6 156160399 156160467 -33119087 - MIR SINE MIR -6 256 192 696 167 0 40 chr6 156160893 156161019 -33118535 + AluSg/x SINE Alu 168 288 -22 2804 251 80 32 chr6 156161123 156161612 -33117942 - L1ME1 LINE L1 -299 5867 5403 228 67 0 0 chr6 156161612 156161642 -33117912 + (TG)n Simple_repeat Simple_repeat 1 30 0 2804 251 80 32 chr6 156161642 156163079 -33116475 - L1ME1 LINE L1 -763 5403 3846 2434 61 0 0 chr6 156163198 156163491 -33116063 + AluY SINE Alu 1 293 -18 26 0 0 0 chr6 156164347 156164373 -33115181 + AT_rich Low_complexity Low_complexity 1 26 0 233 299 117 39 chr6 156164468 156164622 -33114932 + L2 LINE L2 3135 3300 -13 1515 203 59 7 chr6 156164786 156165092 -33114462 + MER7A DNA MER2_type 24 343 -3 548 162 0 18 chr6 156165092 156165203 -33114351 + (TATATG)n Simple_repeat Simple_repeat 3 111 0 2185 154 108 53 chr6 156165340 156165833 -33113721 - MLT2B1 LTR ERVL 0 520 1 272 187 11 44 chr6 156165877 156165968 -33113586 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 264 235 133 10 chr6 156166010 156166108 -33113446 - L2 LINE L2 -10 3262 3153 182 329 73 24 chr6 156166681 156166763 -33112791 + L2 LINE L2 3149 3234 -38 260 308 157 17 chr6 156167487 156167659 -33111895 - MIR SINE MIR -54 208 13 451 312 101 5 chr6 156167669 156167858 -33111696 + MER63A DNA MER1_type 3 209 -1 585 243 62 41 chr6 156168165 156168408 -33111146 + L1ME3A LINE L1 5706 5953 -217 27 0 0 0 chr6 156168720 156168747 -33110807 + AT_rich Low_complexity Low_complexity 1 27 0 23 78 0 0 chr6 156169412 156169463 -33110091 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr6 156169638 156169667 -33109887 + AT_rich Low_complexity Low_complexity 1 29 0 1292 94 90 0 chr6 156171276 156171477 -33108077 + LTR9B LTR ERV1 1 219 -425 13000 109 17 26 chr6 156171477 156173398 -33106156 + HUERS-P3b LTR ERV1 5509 7411 -7 3997 104 39 27 chr6 156173399 156173473 -33106081 + LTR9B LTR ERV1 1 73 -571 2792 6 0 10 chr6 156173473 156173787 -33105767 - AluYa5 SINE Alu 0 311 1 3997 104 39 27 chr6 156173787 156174348 -33105206 + LTR9B LTR ERV1 73 644 0 24 53 0 0 chr6 156174611 156174649 -33104905 + AT_rich Low_complexity Low_complexity 1 38 0 381 154 88 13 chr6 156175009 156175135 -33104419 + L1MD3 LINE L1 6915 7099 -705 328 256 47 0 chr6 156175196 156175282 -33104272 + MLT1F1 LTR MaLR 36 125 -442 2114 229 40 7 chr6 156175282 156175853 -33103701 + L1MD3 LINE L1 7404 7993 -2 4422 154 48 66 chr6 156176437 156176663 -33102891 - Tigger2 DNA MER2_type -6 2712 2483 1846 157 3 3 chr6 156176663 156176950 -33102604 - AluSx SINE Alu -25 287 1 4422 154 48 66 chr6 156176950 156177626 -33101928 - Tigger2 DNA MER2_type -235 2483 1827 398 191 36 73 chr6 156177731 156177841 -33101713 + LTR38B LTR ERV1 8 113 -497 5086 174 33 14 chr6 156177864 156179465 -33100089 + L1PB2 LINE L1 4154 5799 -352 216 0 0 0 chr6 156179465 156179489 -33100065 + (CA)n Simple_repeat Simple_repeat 2 25 0 5086 174 33 14 chr6 156179489 156179847 -33099707 + L1PB2 LINE L1 5799 6149 -2 1512 141 4 52 chr6 156179873 156180143 -33099411 + Tigger2 DNA MER2_type 461 717 -2001 23 33 0 0 chr6 156181790 156181820 -33097734 + AT_rich Low_complexity Low_complexity 1 30 0 217 337 51 10 chr6 156182592 156182690 -33096864 - MIR SINE MIR -130 132 31 25 65 0 0 chr6 156182796 156182842 -33096712 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr6 156183110 156183133 -33096421 + AT_rich Low_complexity Low_complexity 1 23 0 369 0 0 0 chr6 156183210 156183251 -33096303 + (TA)n Simple_repeat Simple_repeat 1 41 0 2334 150 55 2 chr6 156183251 156183651 -33095903 - MSTA LTR MaLR -7 421 1 287 311 0 0 chr6 156183766 156183869 -33095685 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 285 257 0 0 chr6 156184228 156184302 -33095252 - L1ME LINE L1 -527 5594 5521 214 326 0 70 chr6 156184396 156184482 -33095072 - L2 LINE L2 -1 3271 3192 216 363 167 0 chr6 156185357 156185459 -33094095 + L2 LINE L2 3150 3268 -4 2004 138 3 3 chr6 156186475 156186764 -33092790 - AluSx SINE Alu -21 291 3 566 305 67 61 chr6 156186802 156187146 -33092408 - LTR16A LTR ERVL -48 402 57 257 339 23 45 chr6 156189059 156189236 -33090318 - L2 LINE L2 -264 3008 2836 1682 160 147 14 chr6 156190173 156190556 -33088998 - Tigger2 DNA MER2_type 0 2718 1 1888 228 80 49 chr6 156190865 156191544 -33088010 - L1ME2 LINE L1 -22 6142 5443 2854 130 60 0 chr6 156191551 156192021 -33087533 + MER75 DNA T2_type 1 498 -16 371 255 96 15 chr6 156192057 156192257 -33087297 - L1ME2 LINE L1 -743 5403 5217 746 163 14 21 chr6 156192269 156192410 -33087144 - FLAM_C SINE Alu -3 140 1 2013 128 3 10 chr6 156192417 156192750 -33086804 - AluSx SINE Alu 0 312 3 393 276 126 35 chr6 156192759 156193045 -33086509 - L1ME2 LINE L1 -952 5194 4883 554 367 93 11 chr6 156194899 156195340 -33084214 - L3 LINE CR1 -29 1548 1072 1415 207 92 26 chr6 156195747 156196212 -33083342 - MER119 DNA MER1_type -1 582 48 2618 160 226 98 chr6 156196416 156197601 -33081953 + pTR5 LTR ERV1 741 2433 -5 29 0 0 0 chr6 156198419 156198448 -33081106 + AT_rich Low_complexity Low_complexity 1 29 0 1512 227 115 83 chr6 156199283 156200043 -33079511 - LTR1B LTR ERV1 -37 983 1 255 289 158 26 chr6 156200640 156200792 -33078762 + MIR SINE MIR 69 240 -22 799 285 14 14 chr6 156200890 156201111 -33078443 + MER58A DNA MER1_type 1 221 -3 224 323 0 21 chr6 156201519 156201612 -33077942 + GA-rich Low_complexity Low_complexity 2 92 0 424 368 45 9 chr6 156202028 156202248 -33077306 + MIR SINE MIR 26 253 -9 896 241 41 24 chr6 156203382 156203676 -33075878 + pTR5 LTR ERV1 730 1028 -1410 4606 112 64 70 chr6 156203755 156204253 -33075301 + pTR5 LTR ERV1 278 777 -1829 2581 51 0 3 chr6 156204253 156204565 -33074989 - AluY SINE Alu 0 311 1 4606 112 64 70 chr6 156204565 156205115 -33074439 + pTR5 LTR ERV1 777 2606 0 * 29441 92 5 4 chr6 156205115 156209062 -33070492 + HERV9 LTR ERV1 40 3992 -4407 929 51 0 0 chr6 156209162 156209280 -33070274 - L1PA10 LINE L1 -340 5828 5711 21 36 0 0 chr6 156209875 156209903 -33069651 + AT_rich Low_complexity Low_complexity 1 28 0 290 269 34 17 chr6 156209911 156210030 -33069524 - L1ME4a LINE L1 -32 6089 5969 22 56 0 0 chr6 156211069 156211105 -33068449 + AT_rich Low_complexity Low_complexity 1 36 0 301 274 53 35 chr6 156211246 156211359 -33068195 - L1ME4a LINE L1 -248 5873 5759 21 36 0 0 chr6 156212650 156212678 -33066876 + AT_rich Low_complexity Low_complexity 1 28 0 7652 29 0 0 chr6 156212931 156214249 -33065305 - L1PA3 LINE L1 0 6155 4838 520 295 57 57 chr6 156214964 156215421 -33064133 + L1ME3A LINE L1 5709 6165 -5 351 44 0 0 chr6 156215520 156215565 -33063989 + (TG)n Simple_repeat Simple_repeat 2 46 0 1293 200 65 11 chr6 156216023 156216298 -33063256 + AluJo SINE Alu 3 292 -20 266 299 64 13 chr6 156216493 156216650 -33062904 - L1MC5 LINE L1 -505 7456 7292 3595 236 77 18 chr6 156217050 156218220 -33061334 - L1MD2 LINE L1 -1 6358 5129 1154 153 80 20 chr6 156218230 156218345 -33061209 - L1MA9 LINE L1 -5 6307 6200 2179 71 46 0 chr6 156218345 156218626 -33060928 + AluY SINE Alu 1 294 -17 1154 153 80 20 chr6 156218626 156218759 -33060795 - L1MA9 LINE L1 -112 6200 6044 2071 253 26 22 chr6 156218762 156219518 -33060036 - L1MD2 LINE L1 -982 5164 4406 * 2494 237 91 64 chr6 156219500 156221152 -33058402 + L1MDa LINE L1 1163 2889 -3651 707 298 89 24 chr6 156221452 156222238 -33057316 - L1M4 LINE L1 -1587 4559 3723 2102 163 13 20 chr6 156222308 156222701 -33056853 + MLT1B LTR MaLR 1 390 0 2270 131 5 32 chr6 156222743 156223117 -33056437 + THE1B LTR MaLR 1 364 0 541 310 56 19 chr6 156223186 156223719 -33055835 - L1M4 LINE L1 -2683 3463 2911 437 176 0 0 chr6 156225158 156225243 -33054311 - L1MB4 LINE L1 -2 6178 6094 1307 40 0 0 chr6 156225248 156225398 -33054156 - AluSc SINE Alu -124 185 36 3553 194 70 12 chr6 156225398 156226232 -33053322 - L1MB3 LINE L1 -79 6340 5448 2038 216 39 27 chr6 156226230 156226777 -33052777 - L1MB3 LINE L1 -1929 4453 3914 * 1765 169 52 27 chr6 156226777 156227143 -33052411 + THE1C LTR MaLR 1 375 0 8639 159 21 36 chr6 156227144 156228746 -33050808 + THE1C-int LTR MaLR 3 1580 0 1479 190 49 38 chr6 156228748 156229117 -33050437 + THE1C LTR MaLR 3 375 0 2038 216 39 27 chr6 156229117 156229227 -33050327 - L1MB3 LINE L1 -2468 3914 3783 10064 183 36 42 chr6 156229229 156231144 -33048410 - L1MB3 LINE L1 -4051 2333 434 858 273 77 20 chr6 156231144 156231653 -33047901 + MER34 LTR ERV1 5 542 0 10064 183 36 42 chr6 156231653 156232064 -33047490 - L1MB3 LINE L1 -5950 434 22 2165 201 20 11 chr6 156232701 156233149 -33046405 - Tigger2 DNA MER2_type 0 2718 2267 456 159 0 0 chr6 156233133 156233202 -33046352 - Tigger2 DNA MER2_type -2649 69 1 * 23 33 0 0 chr6 156233723 156233753 -33045801 + AT_rich Low_complexity Low_complexity 1 30 0 210 400 27 9 chr6 156234003 156234113 -33045441 + L3 LINE CR1 682 793 -784 650 333 122 23 chr6 156234471 156234816 -33044738 + L3 LINE CR1 1187 1565 -12 24 0 0 0 chr6 156235338 156235362 -33044192 + AT_rich Low_complexity Low_complexity 1 24 0 1888 157 20 23 chr6 156236671 156237015 -33042539 + MER61A LTR ERV1 1 343 0 539 318 90 16 chr6 156237035 156237346 -33042208 + LTR16C LTR ERVL 139 472 -19 379 228 130 118 chr6 156238077 156238219 -33041335 + LTR16A1 LTR ERVL 1 140 -317 856 148 26 26 chr6 156238219 156238408 -33041146 + MER53 DNA DNA 1 189 0 379 228 130 118 chr6 156238408 156238603 -33040951 + LTR16A1 LTR ERVL 140 342 -115 797 132 0 0 chr6 156238603 156238724 -33040830 - MLT2B1 LTR ERVL 0 520 400 415 200 70 43 chr6 156238711 156238826 -33040728 + LTR16A1 LTR ERVL 340 457 0 * 591 320 62 75 chr6 156238826 156239186 -33040368 + HERV16 LTR ERVL 1 348 -4648 2130 117 3 0 chr6 156239186 156239509 -33040045 - AluSp SINE Alu 0 313 1 591 320 62 75 chr6 156239509 156239863 -33039691 + HERV16 LTR ERVL 348 705 -4291 388 284 0 0 chr6 156239901 156239996 -33039558 + HERV16 LTR ERVL 3247 3341 -2313 801 315 87 21 chr6 156239996 156240374 -33039180 + HERV16 LTR ERVL 1677 2079 -2917 268 305 12 0 chr6 156240549 156240631 -33038923 + HERV16 LTR ERVL 2291 2373 -2623 525 341 43 19 chr6 156240844 156241115 -33038439 + HERV16 LTR ERVL 2658 2908 -2088 189 0 0 0 chr6 156241150 156241171 -33038383 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 359 338 53 10 chr6 156241201 156241408 -33038146 + HERV16 LTR ERVL 2993 3208 -2277 257 331 73 7 chr6 156241836 156241972 -33037582 + HERV16 LTR ERVL 3371 3515 -1481 714 265 112 77 chr6 156242093 156242726 -33036828 - LTR41 LTR ERVL -37 736 82 267 31 0 0 chr6 156242747 156242779 -33036775 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2447 50 3 0 chr6 156242779 156243078 -33036476 - L1PA3 LINE L1 -17 6138 5839 6918 28 0 0 chr6 156243078 156243993 -33035561 + L1P1 LINE L1 4562 5476 -679 284 226 21 43 chr6 156243993 156244086 -33035468 - LTR41 LTR ERVL -677 96 6 664 393 9 14 chr6 156244097 156244532 -33035022 + HERV16 LTR ERVL 3884 4316 -1338 314 288 0 0 chr6 156244843 156244916 -33034638 + HERV16 LTR ERVL 4732 4804 -850 2147 224 55 31 chr6 156245193 156245774 -33033780 - L1MD3 LINE L1 0 7995 7401 407 227 25 50 chr6 156245776 156245895 -33033659 - MLT1F1 LTR MaLR -449 118 3 1274 237 87 8 chr6 156245898 156246291 -33033263 - L1MD3 LINE L1 -718 7277 6854 1080 240 76 35 chr6 156246620 156247016 -33032538 + LTR16A1 LTR ERVL 8 419 -38 504 223 167 34 chr6 156247763 156248032 -33031522 + Charlie1 DNA MER1_type 2457 2761 0 345 162 0 0 chr6 156248135 156248203 -33031351 + (TA)n Simple_repeat Simple_repeat 2 69 0 21 36 0 0 chr6 156248223 156248251 -33031303 + AT_rich Low_complexity Low_complexity 1 28 0 28 102 0 0 chr6 156248388 156248486 -33031068 + AT_rich Low_complexity Low_complexity 1 98 0 1853 139 14 3 chr6 156248658 156248946 -33030608 - AluSx SINE Alu -21 291 1 1675 195 53 15 chr6 156251327 156251666 -33027888 + MLT1C LTR MaLR 1 352 -115 18483 168 54 30 chr6 156251668 156251702 -33027852 + L1MA1 LINE L1 20 52 -7513 2295 112 0 0 chr6 156251702 156252005 -33027549 + AluSx SINE Alu 1 303 -9 18483 168 54 30 chr6 156252005 156252643 -33026911 + L1MA1 LINE L1 52 673 -6892 2221 130 0 0 chr6 156252643 156252950 -33026604 + AluSx SINE Alu 1 307 -5 18483 168 54 30 chr6 156252950 156256095 -33023459 + L1MA1 LINE L1 673 3939 -3626 1726 171 55 50 chr6 156256097 156256384 -33023170 + THE1B LTR MaLR 1 292 -72 1839 151 0 0 chr6 156256384 156256662 -33022892 - AluSg SINE Alu 0 310 33 1726 171 55 50 chr6 156256662 156256736 -33022818 + THE1B LTR MaLR 292 364 0 5312 118 22 0 chr6 156256736 156257501 -33022053 + THE1B-int LTR MaLR 1 782 -798 * 7720 166 19 15 chr6 156257497 156258672 -33020882 + L1MA1 LINE L1 5081 6249 -1472 2211 110 0 0 chr6 156258672 156258964 -33020590 + AluY SINE Alu 6 297 -14 7720 166 19 15 chr6 156258964 156260412 -33019142 + L1MA1 LINE L1 6249 7715 -6 2068 115 3 32 chr6 156260433 156260745 -33018809 + AluSp SINE Alu 2 304 -9 977 154 0 11 chr6 156260753 156260935 -33018619 + GA-rich Low_complexity Low_complexity 1 180 0 673 219 0 0 chr6 156260946 156261074 -33018480 + MLT1C LTR MaLR 340 467 0 618 292 173 12 chr6 156261170 156261499 -33018055 - MLT1I LTR MaLR -24 385 4 397 258 33 50 chr6 156261535 156261717 -33017837 - L1MB8 LINE L1 -103 6075 5897 * 519 242 16 16 chr6 156261712 156261894 -33017660 - L1MEc LINE L1 -4368 2028 1847 1150 237 131 73 chr6 156261925 156262759 -33016795 + L1ME2 LINE L1 5265 6152 -12 465 250 9 0 chr6 156262972 156263080 -33016474 + L1MD2 LINE L1 6028 6136 -223 222 37 0 0 chr6 156263080 156263107 -33016447 + (CA)n Simple_repeat Simple_repeat 2 28 0 794 176 30 18 chr6 156263191 156263356 -33016198 + L1MD2 LINE L1 6166 6332 -27 4664 77 18 87 chr6 156264787 156265526 -33014028 - LTR12 LTR ERV1 0 688 1 4497 119 8 11 chr6 156265607 156266507 -33013047 - Harlequin LTR ERV1 0 8399 504 395 129 0 0 chr6 156266503 156266565 -33012989 - Harlequin LTR ERV1 -835 7564 7503 * 7092 40 0 0 chr6 156266566 156267415 -33012139 - L1PA3 LINE L1 0 6155 5307 620 136 61 58 chr6 156267415 156267709 -33011845 - Harlequin LTR ERV1 -5762 1134 840 * 8200 118 26 9 chr6 156267676 156268927 -33010627 - Harlequin LTR ERV1 -3419 4980 3708 9391 164 46 1 chr6 156368927 156370566 -32908988 - Tigger1 DNA MER2_type -659 1759 47 1408 268 128 24 chr6 156370566 156371290 -32908264 - L1ME3A LINE L1 -28 6142 5343 859 146 0 0 chr6 156371308 156371438 -32908116 - AluSg/x SINE Alu -11 298 169 2087 184 19 5 chr6 156371539 156371951 -32907603 - L1MD3 LINE L1 -108 7887 7470 623 292 122 24 chr6 156371953 156372378 -32907176 - L1ME3A LINE L1 -958 5188 4722 931 163 12 0 chr6 156372393 156372553 -32907001 - L1MC1 LINE L1 -1 6332 6171 4135 192 43 119 chr6 156372558 156373219 -32906335 - L1MC1 LINE L1 -222 6111 5401 2712 13 0 0 chr6 156373219 156373524 -32906030 - AluYa5 SINE Alu -6 305 1 4135 192 43 119 chr6 156373524 156373594 -32905960 - L1MC1 LINE L1 -932 5401 5327 255 79 0 0 chr6 156373594 156373632 -32905922 + (CA)n Simple_repeat Simple_repeat 2 39 0 4135 192 43 119 chr6 156373632 156374186 -32905368 - L1MC1 LINE L1 -1006 5327 4732 2044 114 0 0 chr6 156374186 156374492 -32905062 - AluY SINE Alu 0 306 1 4135 192 43 119 chr6 156374492 156374548 -32905006 - L1MC1 LINE L1 -1601 4732 4673 391 171 118 0 chr6 156374548 156374624 -32904930 - Tigger5 DNA MER2_type 0 2323 2239 4135 192 43 119 chr6 156374624 156374671 -32904883 - L1MC1 LINE L1 -1660 4673 4624 323 260 0 0 chr6 156374671 156374744 -32904810 - Tigger5 DNA MER2_type 0 2323 2251 252 268 0 0 chr6 156374712 156374768 -32904786 - Tigger5 DNA MER2_type -2267 56 1 * 4135 192 43 119 chr6 156374768 156374877 -32904677 - L1MC1 LINE L1 -1733 4600 4482 1674 183 7 20 chr6 156374877 156375183 -32904371 + AluSx SINE Alu 1 302 -10 4135 192 43 119 chr6 156375183 156375674 -32903880 - L1MC1 LINE L1 -1851 4482 4133 306 169 56 56 chr6 156375678 156375767 -32903787 - L1ME3A LINE L1 -1441 4705 4617 240 263 99 20 chr6 156375880 156376032 -32903522 - L1ME3A LINE L1 -1718 4428 4265 466 164 48 0 chr6 156376218 156376322 -32903232 + Tigger7 DNA MER2_type 2392 2500 -87 1651 127 28 0 chr6 156376358 156376610 -32902944 - MSTA LTR MaLR 0 428 170 1047 128 118 16 chr6 156376643 156376830 -32902724 - MSTA LTR MaLR 0 428 223 300 287 213 0 chr6 156377073 156377209 -32902345 - MLT1E2 LTR MaLR -327 299 135 22 56 0 0 chr6 156378257 156378293 -32901261 + AT_rich Low_complexity Low_complexity 1 36 0 682 210 59 28 chr6 156378529 156378759 -32900795 + L1MB8 LINE L1 5188 5423 -751 9016 104 10 7 chr6 156378763 156380026 -32899528 + HSMAR1 DNA Mariner 1 1267 -20 2285 263 49 10 chr6 156380032 156380745 -32898809 + L1MB8 LINE L1 5443 6183 -1 21 0 0 0 chr6 156380922 156380943 -32898611 + AT_rich Low_complexity Low_complexity 1 21 0 255 31 0 0 chr6 156380956 156380988 -32898566 + (T)n Simple_repeat Simple_repeat 1 32 0 22 70 0 0 chr6 156382524 156382567 -32896987 + AT_rich Low_complexity Low_complexity 1 43 0 318 246 74 41 chr6 156383952 156384074 -32895480 + L1MC4 LINE L1 7916 8041 -1 280 171 53 0 chr6 156384176 156384252 -32895302 + A-rich Low_complexity Low_complexity 1 80 0 235 266 128 37 chr6 156385743 156385852 -32893702 + MIR SINE MIR 144 262 0 1369 186 19 41 chr6 156386096 156386225 -32893329 - L1MC2 LINE L1 0 6344 6214 2991 141 12 19 chr6 156386225 156386743 -32892811 - MER75 DNA T2_type 0 514 1 1369 186 19 41 chr6 156386743 156386931 -32892623 - L1MC2 LINE L1 -130 6214 6034 763 58 69 5 chr6 156387345 156387550 -32892004 + (TA)n Simple_repeat Simple_repeat 1 218 0 252 252 8 15 chr6 156387762 156387893 -32891661 + GA-rich Low_complexity Low_complexity 1 130 0 299 96 19 0 chr6 156388153 156388205 -32891349 + (GA)n Simple_repeat Simple_repeat 1 53 0 29 49 0 16 chr6 156388410 156388446 -32891108 + AT_rich Low_complexity Low_complexity 1 37 -23 2077 123 0 0 chr6 156388446 156388747 -32890807 - AluSx SINE Alu -11 301 1 29 49 0 16 chr6 156388747 156388771 -32890783 + AT_rich Low_complexity Low_complexity 37 60 0 261 259 0 0 chr6 156388815 156388873 -32890681 + (CATATA)n Simple_repeat Simple_repeat 4 61 0 338 242 42 73 chr6 156389543 156389708 -32889846 - MER112 DNA MER1_type -92 168 9 6247 132 17 19 chr6 156391562 156392384 -32887170 - L1MA6 LINE L1 -5 6295 5472 1860 105 0 0 chr6 156392384 156392631 -32886923 + AluSg SINE Alu 50 296 -14 6247 132 17 19 chr6 156392631 156392875 -32886679 - L1MA6 LINE L1 -828 5472 5229 284 264 121 0 chr6 156393135 156393226 -32886328 - L1MEd LINE L1 -5475 644 543 347 232 143 60 chr6 156393821 156393989 -32885565 + HAL1 LINE L1 1005 1186 -1321 318 268 89 68 chr6 156394114 156394484 -32885070 + L1MCc LINE L1 97 474 -5965 261 128 0 0 chr6 156394970 156395017 -32884537 + (CA)n Simple_repeat Simple_repeat 2 48 0 517 266 52 35 chr6 156395038 156395328 -32884226 + L1MCc LINE L1 1315 1609 -5348 1346 284 67 39 chr6 156395344 156396263 -32883291 + L1MCc LINE L1 1931 3078 -4060 381 208 0 0 chr6 156396271 156396348 -32883206 + L1MD3 LINE L1 7702 7778 -217 399 317 75 34 chr6 156396542 156396810 -32882744 + L1MCc LINE L1 11 289 -6570 180 0 0 0 chr6 156397189 156397209 -32882345 + (TC)n Simple_repeat Simple_repeat 2 21 0 246 203 27 27 chr6 156397218 156397238 -32882316 + MLT2A2 LTR ERVL 403 422 -31 258 32 0 0 chr6 156397238 156397269 -32882285 + (CA)n Simple_repeat Simple_repeat 2 32 0 246 203 27 27 chr6 156397269 156397322 -32882232 + MLT2A2 LTR ERVL 421 453 0 357 332 113 42 chr6 156397337 156397602 -32881952 + L1MCc LINE L1 906 1189 -5666 1104 271 86 29 chr6 156397766 156397780 -32881774 + L1MCc LINE L1 1262 1274 -5581 2551 142 31 17 chr6 156397780 156398202 -32881352 + MSTC LTR MaLR 1 428 0 1104 271 86 29 chr6 156398202 156398840 -32880714 + L1MCc LINE L1 1274 1951 -4904 1352 275 52 35 chr6 156398865 156399520 -32880034 + L1MCc LINE L1 3168 3833 -3124 839 219 31 15 chr6 156399520 156399716 -32879838 - MLT1A1 LTR MaLR 0 365 167 349 260 30 20 chr6 156399852 156399952 -32879602 - MLT1A1 LTR MaLR -264 101 1 2490 249 65 62 chr6 156399952 156401284 -32878270 + L1MCc LINE L1 3829 5165 -1792 1233 219 144 45 chr6 156401283 156401748 -32877806 + L1MB7 LINE L1 5672 6182 -2 * 1664 174 7 17 chr6 156401802 156402096 -32877458 - AluJb SINE Alu -21 291 1 32 43 0 0 chr6 156402911 156402957 -32876597 + AT_rich Low_complexity Low_complexity 1 46 0 2296 105 0 3 chr6 156403554 156403867 -32875687 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 156403933 156403955 -32875599 + AT_rich Low_complexity Low_complexity 1 22 0 1796 252 78 30 chr6 156405579 156406345 -32873209 + L1M4 LINE L1 4121 4923 -1223 715 108 39 0 chr6 156406402 156406504 -32873050 + MER4B LTR ERV1 505 610 0 818 241 36 23 chr6 156406504 156406724 -32872830 - L1MDa LINE L1 -6317 223 1 3172 104 14 94 chr6 156406726 156407301 -32872253 - MER4A LTR ERV1 -134 530 2 3370 277 69 25 chr6 156407319 156408505 -32871049 + L1MD2 LINE L1 237 1475 -5065 568 214 8 8 chr6 156408494 156408620 -32870934 + L1MD2 LINE L1 2076 2201 -4339 * 1379 232 55 10 chr6 156408601 156408998 -32870556 + L1MD2 LINE L1 2077 2491 -4049 6503 258 48 41 chr6 156409004 156411912 -32867642 + L1MD2 LINE L1 3107 6069 -567 1366 207 33 18 chr6 156411912 156412211 -32867343 - AluJo SINE Alu 0 305 3 6503 258 48 41 chr6 156412211 156412776 -32866778 + L1MD2 LINE L1 6069 6628 -8 202 109 18 73 chr6 156413334 156413389 -32866165 + (TTTTTG)n Simple_repeat Simple_repeat 5 56 0 1146 204 54 114 chr6 156413902 156414289 -32865265 + MLT1A1 LTR MaLR 2 365 0 6676 232 27 22 chr6 156414673 156417315 -32862239 - L1MC1 LINE L1 -18 6315 3660 * 10988 188 58 9 chr6 156417311 156418547 -32861007 - L1PA15-16 LINE L1 -3420 3429 2254 199 54 54 0 chr6 156418547 156418584 -32860970 + T-rich Low_complexity Low_complexity 2 40 0 10988 188 58 9 chr6 156418584 156418766 -32860788 - L1PA15-16 LINE L1 -4595 2254 2082 1848 156 0 26 chr6 156418766 156419068 -32860486 - AluSx SINE Alu -18 294 1 10988 188 58 9 chr6 156419068 156421264 -32858290 - L1PA15-16 LINE L1 -4767 2082 2 183 114 0 0 chr6 156421675 156421710 -32857844 + (CAGAGA)n Simple_repeat Simple_repeat 6 40 0 331 358 99 30 chr6 156421999 156422431 -32857123 - L2 LINE L2 -317 2955 2490 673 222 43 0 chr6 156422490 156422652 -32856902 + MER53 DNA DNA 21 189 0 181 269 32 43 chr6 156422717 156422810 -32856744 - L2 LINE L2 -965 2349 2258 792 308 79 53 chr6 156423124 156423591 -32855963 + LTR16C LTR ERVL 11 489 -2 264 369 54 0 chr6 156424066 156424196 -32855358 - L2 LINE L2 -1278 2036 1900 405 291 0 46 chr6 156424231 156424406 -32855148 + HAL1 LINE L1 1439 1605 -902 230 340 106 14 chr6 156425145 156425286 -32854268 - L2 LINE L2 -1605 1709 1556 13697 150 32 4 chr6 156426738 156429087 -32850467 + Tigger1 DNA MER2_type 4 2418 0 1579 266 89 32 chr6 156429128 156429466 -32850088 - L1ME3A LINE L1 -16 6223 5906 1268 236 111 11 chr6 156429466 156429826 -32849728 + MSTD LTR MaLR 1 396 0 1579 266 89 32 chr6 156429826 156430334 -32849220 - L1ME3A LINE L1 -333 5906 5325 22 0 0 0 chr6 156430401 156430423 -32849131 + AT_rich Low_complexity Low_complexity 1 22 0 258 81 0 0 chr6 156430440 156430477 -32849077 + (TG)n Simple_repeat Simple_repeat 2 38 0 930 239 38 38 chr6 156430599 156430837 -32848717 - Cheshire DNA MER1_type -2077 343 106 1384 275 106 45 chr6 156430838 156432016 -32847538 - L1ME3A LINE L1 -2567 3648 2399 15648 72 19 27 chr6 156432133 156434294 -32845260 - HERVL LTR ERVL -3310 2344 201 1871 212 24 5 chr6 156434294 156434676 -32844878 + LTR53 LTR ERVL 131 519 0 1548 206 98 30 chr6 156434760 156435197 -32844357 + MLT1C LTR MaLR 1 467 0 27 0 0 0 chr6 156436648 156436675 -32842879 + AT_rich Low_complexity Low_complexity 1 27 0 29 47 0 0 chr6 156437597 156437640 -32841914 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 156438068 156438089 -32841465 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 156439980 156440004 -32839550 + AT_rich Low_complexity Low_complexity 1 24 0 315 0 0 0 chr6 156440228 156440263 -32839291 + (TG)n Simple_repeat Simple_repeat 2 36 0 865 62 27 0 chr6 156440267 156440379 -32839175 - L1PA7 LINE L1 -13 6141 6027 699 232 27 9 chr6 156440413 156440633 -32838921 - L1ME3A LINE L1 -4006 2390 2167 * 1658 213 32 5 chr6 156440617 156441020 -32838534 - L1MB8 LINE L1 -239 5939 5526 2426 104 62 3 chr6 156441060 156441414 -32838140 - THE1C LTR MaLR 0 375 1 8125 132 136 1 chr6 156441414 156442785 -32836769 - THE1C-int LTR MaLR 0 1580 26 2453 126 5 3 chr6 156442827 156443201 -32836353 - THE1C LTR MaLR 0 375 1 1208 211 56 1 chr6 156443203 156443658 -32835896 - L1MB8 LINE L1 -674 5504 5024 1299 208 0 37 chr6 156443660 156443929 -32835625 + AluJo SINE Alu 9 267 -45 360 0 0 0 chr6 156443962 156444002 -32835552 + (TA)n Simple_repeat Simple_repeat 1 40 0 183 42 0 0 chr6 156444001 156444025 -32835529 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 1037 225 49 21 chr6 156444035 156444319 -32835235 - L1MB8 LINE L1 -1115 5031 4740 30 45 0 0 chr6 156444586 156444630 -32834924 + AT_rich Low_complexity Low_complexity 1 44 0 210 167 0 0 chr6 156445784 156445844 -32833710 + (TA)n Simple_repeat Simple_repeat 2 61 0 307 312 28 0 chr6 156447446 156447555 -32831999 - MER94 DNA DNA -12 122 11 28 99 0 0 chr6 156448132 156448223 -32831331 + AT_rich Low_complexity Low_complexity 1 91 0 1279 259 50 65 chr6 156449219 156449623 -32829931 + L1MC5 LINE L1 6971 7363 -598 2072 107 16 26 chr6 156449623 156449933 -32829621 + AluSx SINE Alu 1 307 -5 1279 259 50 65 chr6 156449933 156450204 -32829350 + L1MC5 LINE L1 7363 7636 -325 315 301 0 10 chr6 156450494 156450597 -32828957 + (TA)n Simple_repeat Simple_repeat 2 103 0 2228 50 0 0 chr6 156451899 156452178 -32827376 + L1PA4 LINE L1 5875 6153 -2 723 71 0 0 chr6 156453107 156453205 -32826349 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 7243 147 20 28 chr6 156453609 156454920 -32824634 + HSMAR2 DNA Mariner 1 1301 -1 227 319 9 0 chr6 156454982 156455095 -32824459 - L1MB8 LINE L1 -1484 4662 4549 390 308 124 35 chr6 156455391 156456312 -32823242 - L1MB8 LINE L1 -2040 4106 3104 6957 197 121 17 chr6 156456490 156459518 -32820036 - L1MB1 LINE L1 0 6168 2816 471 194 101 22 chr6 156459518 156459657 -32819897 + MER89 LTR ERV1 410 559 0 2120 99 49 0 chr6 156459749 156460033 -32819521 - AluSp SINE Alu -15 298 1 947 252 10 0 chr6 156460309 156460515 -32819039 + MER58A DNA MER1_type 1 208 -16 603 310 60 7 chr6 156460541 156460841 -32818713 - L1MEc LINE L1 -5336 1060 745 461 205 0 0 chr6 156460887 156460970 -32818584 - MLT1C LTR MaLR -384 83 1 486 318 104 3 chr6 156461095 156461515 -32818039 - MLT1J LTR MaLR -34 477 1 293 346 92 22 chr6 156461978 156462163 -32817391 - MIR SINE MIR -34 228 31 308 320 120 40 chr6 156462283 156462558 -32816996 + L3 LINE CR1 1169 1465 -112 451 245 75 13 chr6 156462623 156462782 -32816772 + MLT1C LTR MaLR 6 174 -293 415 72 29 0 chr6 156462788 156462857 -32816697 - L1P LINE L1 -775 5391 5321 339 236 0 14 chr6 156462857 156462953 -32816601 - AluJb SINE Alu 0 301 207 1529 193 119 3 chr6 156462953 156463331 -32816223 - L1P LINE L1 -815 5331 4910 * 5006 122 12 12 chr6 156463319 156464083 -32815471 + L1PA16 LINE L1 5394 6157 -9 746 274 52 24 chr6 156464097 156464385 -32815169 + MLT1C LTR MaLR 171 466 -1 398 241 0 12 chr6 156465024 156465107 -32814447 - MER58B DNA MER1_type -17 324 243 670 243 0 0 chr6 156465799 156465968 -32813586 + L1 LINE L1 4205 4373 -1773 25 0 0 0 chr6 156466513 156466538 -32813016 + AT_rich Low_complexity Low_complexity 1 25 0 1058 89 0 0 chr6 156466627 156466773 -32812781 - pTR5 LTR ERV1 -2046 392 247 234 0 0 0 chr6 156466773 156466799 -32812755 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7683 16 1 0 chr6 156466800 156468467 -32811087 - L1PA2 LINE L1 -12 6143 4475 9633 28 0 0 chr6 156468467 156469612 -32809942 + L1PA2 LINE L1 3318 4462 -1684 1344 81 0 5 chr6 156469613 156469810 -32809744 - pTR5 LTR ERV1 -2177 261 66 349 250 10 0 chr6 156469810 156469910 -32809644 - LTR30 LTR ERV1 -80 642 542 3107 139 55 56 chr6 156469910 156470776 -32808778 - pTR5 LTR ERV1 -415 2023 724 1319 195 53 68 chr6 156471603 156471805 -32807749 - MLT1A2 LTR MaLR 0 374 179 324 0 0 0 chr6 156471805 156471841 -32807713 + (GA)n Simple_repeat Simple_repeat 1 36 0 1319 195 53 68 chr6 156471841 156472018 -32807536 - MLT1A2 LTR MaLR -195 179 1 261 276 147 9 chr6 156472018 156472134 -32807420 + MER69A DNA AcHobo 45 176 -1 223 373 34 0 chr6 156473039 156473157 -32806397 - MIR3 SINE MIR 0 208 87 261 57 0 0 chr6 156473181 156473216 -32806338 + (A)n Simple_repeat Simple_repeat 1 35 0 272 298 48 0 chr6 156474780 156474864 -32804690 + HAL1 LINE L1 524 611 -1896 276 233 6 163 chr6 156475272 156475444 -32804110 + HAL1 LINE L1 2247 2391 -116 317 342 25 8 chr6 156476089 156476209 -32803345 - MLT1L LTR MaLR -404 211 90 307 325 90 42 chr6 156476559 156476916 -32802638 - L1M4 LINE L1 -2252 3894 3521 606 302 53 9 chr6 156477368 156477593 -32801961 + MIR SINE MIR 18 252 -10 1417 198 28 17 chr6 156478099 156478387 -32801167 - MLT2D LTR ERVL -123 291 1 44 46 0 0 chr6 156478741 156478806 -32800748 + AT_rich Low_complexity Low_complexity 1 65 0 1626 167 40 12 chr6 156478880 156479204 -32800350 + L1MC3 LINE L1 7442 7774 -11 689 270 60 41 chr6 156479223 156479542 -32800012 + L1ME LINE L1 36 360 -6036 2076 110 81 29 chr6 156479761 156480106 -32799448 - THE1B LTR MaLR -1 363 1 350 319 99 42 chr6 156480115 156480378 -32799176 + L1ME LINE L1 547 824 -5572 1259 146 0 0 chr6 156480382 156480581 -32798973 + L1PBa LINE L1 2 200 -6663 12504 137 98 6 chr6 156480583 156483608 -32795946 + L1PBa LINE L1 636 3941 -2921 2433 121 3 0 chr6 156483608 156483964 -32795590 + L1PB1 LINE L1 5785 6148 -3 12504 137 98 6 chr6 156483964 156483976 -32795578 + L1PBa LINE L1 3941 3950 -2912 1703 255 146 40 chr6 156484186 156485182 -32794372 + L1ME LINE L1 4129 5229 -986 296 296 9 9 chr6 156485303 156485411 -32794143 + L1ME LINE L1 5631 5738 -452 25 51 0 0 chr6 156485504 156485543 -32794011 + AT_rich Low_complexity Low_complexity 1 39 0 1786 274 49 53 chr6 156485991 156486429 -32793125 - L1MCa LINE L1 -1731 5210 4775 1843 153 0 34 chr6 156486429 156486750 -32792804 + AluJb SINE Alu 1 310 -2 1786 274 49 53 chr6 156486750 156487166 -32792388 - L1MCa LINE L1 -2166 4775 4359 1441 175 44 7 chr6 156487196 156487470 -32792084 - L1PB4 LINE L1 0 6156 5873 2366 126 13 8 chr6 156487543 156487916 -32791638 + THE1C LTR MaLR 1 375 0 427 271 84 4 chr6 156487959 156488360 -32791194 - L1MCa LINE L1 -3651 3290 2853 423 0 0 0 chr6 156488414 156488461 -32791093 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1125 108 0 0 chr6 156488467 156488615 -32790939 - AluSq SINE Alu -31 282 135 456 287 167 39 chr6 156488620 156489003 -32790551 - L1MCa LINE L1 -5124 1299 868 477 275 111 59 chr6 156489272 156489643 -32789911 - L1MCa LINE L1 -6004 419 30 2054 133 3 0 chr6 156491179 156491473 -32788081 - AluSg SINE Alu -15 295 1 228 254 15 15 chr6 156491951 156492018 -32787536 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1791 257 72 20 chr6 156492089 156492848 -32786706 + L1ME3 LINE L1 2110 2908 -3238 663 265 127 38 chr6 156492905 156493479 -32786075 + L1ME3 LINE L1 2788 3412 -2734 1297 235 42 79 chr6 156493491 156494061 -32785493 + L1ME3 LINE L1 4601 5149 -997 204 226 0 0 chr6 156494097 156494150 -32785404 + A-rich Low_complexity Low_complexity 3 55 0 1632 265 91 11 chr6 156494226 156494914 -32784640 + L1ME1 LINE L1 5388 6144 -20 22 70 0 0 chr6 156494916 156494959 -32784595 + AT_rich Low_complexity Low_complexity 1 43 0 183 244 22 0 chr6 156494969 156495014 -32784540 + L2 LINE L2 3025 3070 -243 442 297 103 35 chr6 156496048 156496879 -32782675 + L1MCc LINE L1 1290 2370 -4752 * 490 211 0 9 chr6 156496873 156497015 -32782539 + L1ME3 LINE L1 5232 5371 -775 289 275 26 30 chr6 156496998 156497104 -32782450 + L1MC2 LINE L1 6231 6333 0 * 271 311 34 8 chr6 156497100 156497219 -32782335 + L1M4c LINE L1 1643 1764 -4620 * 2162 109 0 10 chr6 156497304 156497606 -32781948 + AluSq SINE Alu 1 299 -14 501 258 133 62 chr6 156497664 156498199 -32781355 + L1M4c LINE L1 3020 3592 -2790 869 276 14 57 chr6 156498210 156498493 -32781061 + L1ME3 LINE L1 5826 6093 -69 1500 173 3 37 chr6 156498493 156498788 -32780766 + AluJb SINE Alu 28 312 0 869 276 14 57 chr6 156498788 156498856 -32780698 + L1ME3 LINE L1 6093 6162 0 618 248 106 15 chr6 156499775 156499973 -32779581 - L1ME1 LINE L1 -26 6140 5925 1722 141 78 25 chr6 156500310 156500630 -32778924 + MER1B DNA MER1_type 1 337 0 248 282 28 14 chr6 156500973 156501044 -32778510 - L2 LINE L2 -559 2755 2684 416 229 90 37 chr6 156501395 156501583 -32777971 - L1MC4 LINE L1 -155 7887 7690 333 0 0 0 chr6 156501601 156501638 -32777916 + (CA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr6 156501823 156501846 -32777708 + AT_rich Low_complexity Low_complexity 1 23 0 402 115 0 0 chr6 156502020 156502081 -32777473 + (TTA)n Simple_repeat Simple_repeat 2 62 0 243 103 0 0 chr6 156502122 156502161 -32777393 + (TC)n Simple_repeat Simple_repeat 2 40 0 228 67 0 0 chr6 156502161 156502191 -32777363 + (CA)n Simple_repeat Simple_repeat 2 31 0 305 284 31 76 chr6 156503517 156503742 -32775812 + L1MEd LINE L1 664 878 -5241 266 200 121 64 chr6 156503869 156504009 -32775545 + L1MEd LINE L1 929 1076 -5043 387 206 23 114 chr6 156504547 156504678 -32774876 - MIR SINE MIR -22 240 122 364 175 21 0 chr6 156505094 156505191 -32774363 + CT-rich Low_complexity Low_complexity 2 100 0 1563 262 43 46 chr6 156505256 156505928 -32773626 + L1MC4 LINE L1 7068 7737 -305 274 261 34 0 chr6 156506136 156506224 -32773330 + L1MC4 LINE L1 7924 8014 -28 21 71 0 0 chr6 156506380 156506422 -32773132 + AT_rich Low_complexity Low_complexity 1 42 0 2142 116 3 0 chr6 156506644 156506938 -32772616 - AluSg SINE Alu -13 297 3 335 211 237 31 chr6 156507225 156507419 -32772135 - MLT1H1 LTR MaLR -5 537 304 355 262 93 9 chr6 156507469 156507576 -32771978 - MLT1H1 LTR MaLR -439 116 1 357 298 0 33 chr6 156508515 156508636 -32770918 - MLT1H LTR MaLR -386 163 47 625 304 70 13 chr6 156508857 156509084 -32770470 + MIR SINE MIR 2 241 -21 594 0 0 0 chr6 156509203 156509269 -32770285 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 2039 118 13 32 chr6 156509331 156509646 -32769908 - AluSx SINE Alu -3 309 1 1642 211 46 3 chr6 156509883 156510233 -32769321 - MLT1A1 LTR MaLR 0 365 1 217 179 18 18 chr6 156510677 156510733 -32768821 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 24 32 0 0 chr6 156511485 156511516 -32768038 + AT_rich Low_complexity Low_complexity 1 31 0 278 151 19 0 chr6 156512746 156512799 -32766755 + MADE1 DNA Mariner 1 54 -26 2603 312 81 14 chr6 156513044 156514191 -32765363 + L2 LINE L2 1794 3014 -299 309 326 8 31 chr6 156514245 156514374 -32765180 + L2 LINE L2 3163 3288 -25 221 355 105 0 chr6 156514555 156514679 -32764875 - MIR SINE MIR -16 246 110 195 292 107 36 chr6 156515169 156515337 -32764217 + L2 LINE L2 1990 2169 -1145 1114 209 54 8 chr6 156515367 156515626 -32763928 + ORSL DNA AcHobo 3 273 -2 366 288 256 4 chr6 156515640 156515890 -32763664 + L2 LINE L2 2805 3117 -196 22 35 0 0 chr6 156515890 156515919 -32763635 + AT_rich Low_complexity Low_complexity 1 29 0 4547 88 40 6 chr6 156515919 156516588 -32762966 - L1PB1 LINE L1 -1 6150 5459 42683 32 21 1 chr6 156516647 156522678 -32756876 - L1PA2 LINE L1 0 6155 1 1059 132 19 0 chr6 156522680 156522839 -32756715 - FRAM SINE Alu -15 161 1 303 302 101 13 chr6 156522843 156522992 -32756562 + L2 LINE L2 3151 3312 -1 345 110 41 0 chr6 156523706 156523779 -32755775 + CT-rich Low_complexity Low_complexity 1 76 0 1519 123 36 43 chr6 156526807 156527108 -32752446 + L1MA3 LINE L1 6007 6305 0 206 156 22 0 chr6 156527902 156527947 -32751607 + (CA)n Simple_repeat Simple_repeat 1 46 0 1341 171 87 4 chr6 156528449 156528597 -32750957 - AluJo SINE Alu -25 287 153 224 29 0 29 chr6 156528597 156528631 -32750923 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1341 171 87 4 chr6 156528631 156528746 -32750808 - AluJo SINE Alu -159 153 2 225 294 0 0 chr6 156528995 156529046 -32750508 + L2 LINE L2 3263 3313 0 306 50 0 0 chr6 156529281 156529321 -32750233 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 2293 94 3 22 chr6 156529792 156530111 -32749443 - AluSp SINE Alu 0 313 1 1262 291 40 80 chr6 156530292 156531020 -32748534 - L1ME3A LINE L1 -9 6161 5463 1819 99 4 8 chr6 156582327 156582580 -32696974 + AluSq SINE Alu 59 310 -3 40 21 0 0 chr6 156584599 156584646 -32694908 + AT_rich Low_complexity Low_complexity 1 47 0 328 328 27 22 chr6 156584811 156584994 -32694560 + L2 LINE L2 2224 2407 -907 605 197 16 36 chr6 156585093 156585159 -32694395 + MER53 DNA DNA 1 67 -122 2356 98 0 0 chr6 156585159 156585464 -32694090 - AluSx SINE Alu -7 305 1 605 197 16 36 chr6 156585464 156585590 -32693964 + MER53 DNA DNA 67 189 0 397 269 19 0 chr6 156585598 156585702 -32693852 + MLT1I LTR MaLR 304 409 0 1303 238 0 19 chr6 156586684 156586995 -32692559 - AluJo SINE Alu -5 307 3 358 322 33 28 chr6 156587144 156587358 -32692196 - LTR16A1 LTR ERVL -14 443 229 1210 225 28 95 chr6 156587664 156588055 -32691499 + MLT1A2 LTR MaLR 1 365 -9 4513 191 27 2 chr6 156588174 156589417 -32690137 + L1PA16 LINE L1 4767 6040 -126 1995 155 29 3 chr6 156589774 156589814 -32689740 + L1MB7 LINE L1 5785 5822 -362 1682 120 154 0 chr6 156589814 156590080 -32689474 + AluSp SINE Alu 1 307 -6 1995 155 29 3 chr6 156590080 156590419 -32689135 + L1MB7 LINE L1 5822 6174 -10 26 0 0 0 chr6 156590466 156590492 -32689062 + AT_rich Low_complexity Low_complexity 1 26 0 370 80 0 0 chr6 156592065 156592115 -32687439 + MADE1 DNA Mariner 1 50 -30 435 71 0 0 chr6 156592149 156592205 -32687349 - MADE1 DNA Mariner -24 56 1 847 282 144 42 chr6 156593017 156593727 -32685827 - L1MEd LINE L1 -3181 2948 2167 576 146 42 141 chr6 156593731 156593849 -32685705 - L1MC2 LINE L1 -1 6343 6250 1892 195 52 95 chr6 156593849 156594428 -32685126 - MLT2B3 LTR ERVL 0 554 1 576 146 42 141 chr6 156594428 156594501 -32685053 - L1MC2 LINE L1 -94 6250 6171 413 231 11 11 chr6 156594505 156594596 -32684958 + MSTD LTR MaLR 3 93 -303 2118 85 11 0 chr6 156594596 156594901 -32684653 + AluY SINE Alu 1 308 0 368 160 13 27 chr6 156594906 156594981 -32684573 + MSTD LTR MaLR 323 396 0 1662 185 49 3 chr6 156594981 156595306 -32684248 - L1MC2 LINE L1 -171 6173 5834 239 313 37 18 chr6 156595475 156595638 -32683916 - HAL1 LINE L1 -840 1667 1502 229 301 92 19 chr6 156595800 156596006 -32683548 - L1MEd LINE L1 -4862 1257 1037 213 257 19 29 chr6 156596991 156597096 -32682458 + (TATATG)n Simple_repeat Simple_repeat 5 108 0 238 348 42 0 chr6 156597203 156597321 -32682233 - L1P4 LINE L1 -354 5807 5685 459 379 74 23 chr6 156597482 156598033 -32681521 + L2 LINE L2 2209 2838 -476 233 300 0 38 chr6 156598143 156598223 -32681331 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 246 279 132 15 chr6 156598461 156598597 -32680957 - L2 LINE L2 -3 3310 3159 832 261 49 8 chr6 156598604 156598849 -32680705 + MIR SINE MIR 3 257 -5 21 0 0 0 chr6 156598886 156598907 -32680647 + AT_rich Low_complexity Low_complexity 1 21 0 363 274 50 99 chr6 156598960 156599161 -32680393 + L1MEd LINE L1 328 518 -5601 941 253 26 30 chr6 156599339 156599724 -32679830 - LTR40b LTR ERVL -17 445 1 7486 277 52 50 chr6 156599740 156601488 -32678066 - HERVL40 LTR ERVL -19 5511 3755 1900 121 147 41 chr6 156601488 156601875 -32677679 + MSTA LTR MaLR 1 428 0 7486 277 52 50 chr6 156601875 156602932 -32676622 - HERVL40 LTR ERVL -1775 3755 2701 437 238 0 29 chr6 156602963 156603068 -32676486 - HERV16 LTR ERVL -4139 857 756 369 0 0 0 chr6 156603079 156603120 -32676434 + (TA)n Simple_repeat Simple_repeat 2 42 0 462 310 75 104 chr6 156603390 156603605 -32675949 - L1M4 LINE L1 -1548 4598 4378 1687 205 14 58 chr6 156603605 156604034 -32675520 - MLT2D LTR ERVL -4 410 1 462 310 75 104 chr6 156604034 156604789 -32674765 - L1M4 LINE L1 -1768 4378 3656 296 229 67 29 chr6 156604801 156604906 -32674648 - LTR33A LTR ERVL 0 523 415 216 0 0 0 chr6 156605455 156605479 -32674075 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 228 237 13 26 chr6 156605618 156605694 -32673860 - L1M4 LINE L1 -2713 3433 3359 1845 194 9 3 chr6 156606231 156606561 -32672993 - MLT1B LTR MaLR -58 332 1 2332 92 25 89 chr6 156606997 156607400 -32672154 - MER51B LTR ERV1 0 377 1 324 303 16 0 chr6 156607608 156607730 -32671824 + HAL1 LINE L1 1499 1622 -885 1912 172 60 73 chr6 156607926 156608310 -32671244 + MER67D LTR ERV1 5 382 -132 2032 93 10 23 chr6 156608310 156608620 -32670934 + AluSp SINE Alu 7 312 -1 1912 172 60 73 chr6 156608620 156608752 -32670802 + MER67D LTR ERV1 382 514 0 2054 243 79 45 chr6 156608927 156609019 -32670535 + L1M4 LINE L1 2803 2890 -3256 1197 128 27 0 chr6 156609019 156609206 -32670348 - L1PA10 LINE L1 -4 6164 5973 2054 243 79 45 chr6 156609206 156610026 -32669528 + L1M4 LINE L1 2890 3746 -2400 784 211 49 53 chr6 156610044 156610328 -32669226 - L1M4 LINE L1 -1460 4686 4404 21 0 0 0 chr6 156610729 156610750 -32668804 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr6 156611336 156611372 -32668182 + AT_rich Low_complexity Low_complexity 1 36 0 24 85 0 0 chr6 156612314 156612373 -32667181 + AT_rich Low_complexity Low_complexity 1 59 0 1583 198 7 10 chr6 156612589 156612892 -32666662 + AluJo SINE Alu 4 305 -7 183 222 0 22 chr6 156614231 156614276 -32665278 - L2 LINE L2 -8 3264 3221 727 106 0 0 chr6 156616418 156616544 -32663010 - AluSg/x SINE Alu 0 310 194 212 138 62 0 chr6 156617276 156617341 -32662213 + (TA)n Simple_repeat Simple_repeat 1 69 0 198 287 21 75 chr6 156617492 156617586 -32661968 + L2 LINE L2 1384 1472 -1842 10903 205 35 22 chr6 156617633 156617840 -32661714 - L1MC3 LINE L1 -8 7777 7574 435 63 0 0 chr6 156617840 156617903 -32661651 + (TG)n Simple_repeat Simple_repeat 2 64 0 10903 205 35 22 chr6 156617903 156619973 -32659581 - L1MC3 LINE L1 -211 7574 5455 5765 124 13 0 chr6 156619973 156621264 -32658290 + L1PA11 LINE L1 4865 6171 -3 10903 205 35 22 chr6 156621264 156621547 -32658007 - L1MC3 LINE L1 -2330 5455 5177 31 92 0 0 chr6 156621559 156621646 -32657908 + AT_rich Low_complexity Low_complexity 1 87 0 281 241 12 12 chr6 156621655 156621738 -32657816 - L1MC3 LINE L1 -1016 5130 5048 23 0 0 0 chr6 156621940 156621963 -32657591 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr6 156622284 156622307 -32657247 + (TAGA)n Simple_repeat Simple_repeat 2 24 0 285 303 0 46 chr6 156623283 156623392 -32656162 + MLT1-int LTR MaLR 775 878 -493 1027 276 95 49 chr6 156623700 156624186 -32655368 + MLT1G1 LTR MaLR 88 595 0 42265 35 23 0 chr6 156624776 156630787 -32648767 + L1PA2 LINE L1 5 6155 0 36 53 0 0 chr6 156633128 156633185 -32646369 + AT_rich Low_complexity Low_complexity 1 57 0 395 335 56 4 chr6 156633741 156633903 -32645651 - MIR SINE MIR -41 167 2 181 387 107 20 chr6 156634142 156634292 -32645262 - L2 LINE L2 -527 2787 2625 312 27 0 0 chr6 156634580 156634617 -32644937 + (TG)n Simple_repeat Simple_repeat 1 37 0 408 40 0 0 chr6 156634619 156634669 -32644885 + (GA)n Simple_repeat Simple_repeat 2 51 0 283 330 42 71 chr6 156634721 156635103 -32644451 - L2 LINE L2 -1081 2233 1863 315 377 34 7 chr6 156636002 156636148 -32643406 - MIR SINE MIR -111 151 2 896 250 72 47 chr6 156637096 156637525 -32642029 + MSTD LTR MaLR 1 426 -6 332 239 57 57 chr6 156637621 156637780 -32641774 + L1M4 LINE L1 3912 4070 -2076 * 8978 176 54 31 chr6 156637770 156639019 -32640535 - L1P LINE L1 -1616 4530 3218 2356 78 0 0 chr6 156639019 156639314 -32640240 - AluY SINE Alu -16 295 1 8978 176 54 31 chr6 156639314 156640041 -32639513 - L1P LINE L1 -2928 3218 2509 9972 152 35 14 chr6 156640041 156640719 -32638835 + Tigger1 DNA MER2_type 631 1294 -1124 1534 176 4 0 chr6 156640719 156640991 -32638563 + L1PA16 LINE L1 5891 6163 -3 9972 152 35 14 chr6 156640991 156642064 -32637490 + Tigger1 DNA MER2_type 1294 2418 0 342 276 60 8 chr6 156642068 156642202 -32637352 + L1M4 LINE L1 3029 3169 -2977 21 0 0 0 chr6 156644289 156644310 -32635244 + AT_rich Low_complexity Low_complexity 1 21 0 345 47 0 0 chr6 156644434 156644477 -32635077 + (TG)n Simple_repeat Simple_repeat 2 44 0 212 245 0 19 chr6 156645536 156645589 -32633965 + CT-rich Low_complexity Low_complexity 3 54 0 375 180 130 20 chr6 156645667 156645767 -32633787 - L1MA3 LINE L1 0 6305 6195 * 20248 175 40 13 chr6 156645754 156646071 -32633483 - L1 LINE L1 -1422 6143 5836 225 0 0 0 chr6 156646071 156646096 -32633458 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 20248 175 40 13 chr6 156646096 156651743 -32627811 - L1 LINE L1 -1729 5836 14 459 267 0 67 chr6 156651834 156651969 -32627585 - L2 LINE L2 -1 3312 3187 270 350 49 8 chr6 156651984 156652107 -32627447 + MER5A DNA MER1_type 59 186 -3 1237 201 142 12 chr6 156652161 156652484 -32627070 - MLT1A1 LTR MaLR 0 365 1 29 28 0 0 chr6 156652780 156652816 -32626738 + AT_rich Low_complexity Low_complexity 1 36 0 5750 99 19 27 chr6 156653674 156655499 -32624055 + L1PA14 LINE L1 4376 6158 -3 22 0 0 0 chr6 156656798 156656820 -32622734 + AT_rich Low_complexity Low_complexity 1 22 0 2265 66 26 17 chr6 156657519 156657821 -32621733 + AluY SINE Alu 3 307 -4 1308 239 87 56 chr6 156657837 156657991 -32621563 - L1ME2 LINE L1 -238 5860 5712 1229 216 4 0 chr6 156657991 156658259 -32621295 - L1MB7 LINE L1 -9 6175 5907 1308 239 87 56 chr6 156658259 156659006 -32620548 - L1ME2 LINE L1 -386 5712 4926 574 206 0 8 chr6 156659048 156659179 -32620375 + L1MB7 LINE L1 6046 6175 -9 298 230 48 24 chr6 156659184 156659310 -32620244 + L1ME2 LINE L1 5770 5898 -266 1582 224 63 45 chr6 156659314 156659449 -32620105 - L1ME2 LINE L1 -1162 4918 4787 723 64 27 0 chr6 156659449 156659559 -32619995 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 1582 224 63 45 chr6 156659559 156659922 -32619632 - L1ME2 LINE L1 -1293 4787 4406 1706 234 111 6 chr6 156659922 156659977 -32619577 - MLT2B1 LTR ERVL 0 520 472 468 77 0 0 chr6 156659977 156660042 -32619512 + (TG)n Simple_repeat Simple_repeat 2 66 0 1706 234 111 6 chr6 156660042 156660455 -32619099 - MLT2B1 LTR ERVL -48 472 3 1582 224 63 45 chr6 156660455 156660513 -32619041 - L1ME2 LINE L1 -1674 4406 4351 318 218 13 0 chr6 156660524 156660602 -32618952 + L1M4 LINE L1 5201 5279 -867 21 0 0 0 chr6 156660733 156660754 -32618800 + AT_rich Low_complexity Low_complexity 1 21 0 441 303 22 84 chr6 156660858 156661276 -32618278 - L1ME2 LINE L1 -4638 1623 1261 2477 69 0 0 chr6 156661276 156661579 -32617975 - AluSx SINE Alu -9 303 1 441 303 22 84 chr6 156661579 156661837 -32617717 - L1ME2 LINE L1 -5000 1261 989 300 355 62 12 chr6 156661846 156662088 -32617466 - L1ME2 LINE L1 -5149 921 668 2092 81 53 0 chr6 156662970 156663253 -32616301 - AluY SINE Alu -13 298 1 186 71 0 0 chr6 156663264 156663292 -32616262 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1946 147 27 15 chr6 156663725 156664058 -32615496 - MER1B DNA MER1_type 0 337 1 222 37 0 0 chr6 156664374 156664401 -32615153 + (TAAAA)n Simple_repeat Simple_repeat 1 27 0 1974 130 6 19 chr6 156664448 156664763 -32614791 - AluSq SINE Alu -2 311 1 222 214 0 36 chr6 156664813 156664869 -32614685 + CT-rich Low_complexity Low_complexity 5 58 0 1047 136 45 0 chr6 156664891 156665090 -32614464 + L1MA8 LINE L1 6082 6289 -2 221 175 0 0 chr6 156665203 156665243 -32614311 + L2 LINE L2 3274 3313 0 1030 264 90 22 chr6 156665716 156666663 -32612891 + L1ME2 LINE L1 5106 6137 -27 19872 176 18 31 chr6 156666761 156669070 -32610484 + L1MA3 LINE L1 16 2353 -5371 798 217 0 24 chr6 156669070 156669236 -32610318 - AluSg/x SINE Alu -15 297 136 19872 176 18 31 chr6 156669236 156674149 -32605405 + L1MA3 LINE L1 2353 7307 -417 1102 154 159 13 chr6 156674149 156674382 -32605172 - MSTA LTR MaLR -160 268 2 1574 235 72 24 chr6 156674382 156674967 -32604587 - L1ME LINE L1 -397 5769 5070 2805 0 0 0 chr6 156674967 156675271 -32604283 - AluYa5 SINE Alu -7 304 1 1574 235 72 24 chr6 156675271 156675638 -32603916 - L1ME LINE L1 -1096 5070 4722 4423 246 45 35 chr6 156676774 156678154 -32601400 + L1MC1 LINE L1 3523 4916 -1230 2352 131 28 14 chr6 156678155 156678514 -32601040 + THE1B LTR MaLR 1 364 0 3304 96 15 0 chr6 156678514 156678985 -32600569 + THE1B-int LTR MaLR 1 478 -1102 * 5126 111 6 3 chr6 156678984 156679702 -32599852 + THE1B-int LTR MaLR 861 1580 0 2132 120 51 23 chr6 156679702 156680053 -32599501 + THE1B LTR MaLR 1 361 -3 400 264 0 58 chr6 156680059 156680214 -32599340 + L1MC1 LINE L1 4932 5077 -1069 3208 178 16 29 chr6 156680216 156680386 -32599168 + L1MC1 LINE L1 5662 5833 -500 2346 74 3 26 chr6 156680386 156680696 -32598858 + AluSq SINE Alu 1 303 -10 3208 178 16 29 chr6 156680696 156681206 -32598348 + L1MC1 LINE L1 5833 6333 0 337 242 11 0 chr6 156681236 156681327 -32598227 + HAL1 LINE L1 116 207 -2300 442 285 115 24 chr6 156681350 156681603 -32597951 + HAL1 LINE L1 1048 1323 -1184 2111 126 52 3 chr6 156681616 156681980 -32597574 - L1MA1 LINE L1 0 6302 5921 4948 180 22 14 chr6 156681980 156682878 -32596676 - L1M1 LINE L1 -5301 2264 1360 23 0 0 0 chr6 156683154 156683177 -32596377 + AT_rich Low_complexity Low_complexity 1 23 0 2580 219 74 12 chr6 156683204 156683894 -32595660 - MER44D DNA MER2_type 0 605 1 211 382 32 6 chr6 156684091 156684248 -32595306 + L3 LINE CR1 1078 1238 -339 513 265 52 33 chr6 156684418 156684629 -32594925 + MER20 DNA MER1_type 1 215 -4 408 346 102 10 chr6 156684901 156685106 -32594448 + MIR SINE MIR 8 231 -31 226 160 20 0 chr6 156685145 156685195 -32594359 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 24 0 0 0 chr6 156687228 156687252 -32592302 + AT_rich Low_complexity Low_complexity 1 24 0 216 182 0 0 chr6 156687475 156687519 -32592035 + CT-rich Low_complexity Low_complexity 4 47 0 421 378 84 41 chr6 156687764 156688491 -32591063 - L2 LINE L2 -1 3271 2520 1728 236 25 48 chr6 156688619 156689094 -32590460 + MLT1C LTR MaLR 4 467 0 1678 237 60 87 chr6 156689418 156690088 -32589466 + MLT1E1 LTR MaLR 3 654 0 217 222 0 0 chr6 156690285 156690330 -32589224 + CT-rich Low_complexity Low_complexity 2 46 0 1289 136 41 18 chr6 156691606 156691826 -32587728 + L1MC/D LINE L1 5381 5605 -739 234 143 0 0 chr6 156692367 156692416 -32587138 + (TC)n Simple_repeat Simple_repeat 1 49 0 242 208 0 0 chr6 156692567 156692615 -32586939 - MLT1F LTR MaLR -459 83 36 42604 34 22 1 chr6 156693565 156699593 -32579961 + L1PA2 LINE L1 1 6153 -2 870 279 81 16 chr6 156699843 156700287 -32579267 - L1ME3A LINE L1 -30 6140 5668 696 262 56 30 chr6 156700304 156700606 -32578948 + L1ME LINE L1 5296 5605 -557 304 284 82 46 chr6 156700691 156700885 -32578669 - L1MDa LINE L1 -4619 1921 1721 1696 221 53 32 chr6 156701219 156701785 -32577769 - L1MB8 LINE L1 -1 6177 5600 1022 174 0 0 chr6 156701787 156701942 -32577612 - FRAM SINE Alu -17 159 5 754 237 0 0 chr6 156701942 156702098 -32577456 - L1MB8 LINE L1 -558 5608 5453 308 294 79 0 chr6 156702200 156702326 -32577228 + L1M4 LINE L1 3709 3844 -2302 2130 223 46 59 chr6 156702812 156703421 -32576133 - MER77 LTR ERV1 0 605 5 2020 168 24 24 chr6 156703635 156704058 -32575496 - L1MA7 LINE L1 -3 6288 5866 1222 176 18 0 chr6 156704059 156704281 -32575273 + L1MA4 LINE L1 5394 5619 -672 756 170 141 29 chr6 156704349 156704384 -32575170 + L1MA4 LINE L1 5598 5628 -663 402 21 0 0 chr6 156704384 156704431 -32575123 + (TA)n Simple_repeat Simple_repeat 1 47 0 756 170 141 29 chr6 156704431 156704601 -32574953 + L1MA4 LINE L1 5628 5822 -469 2738 188 27 4 chr6 156704896 156705454 -32574100 - L1MC1 LINE L1 -11 6322 5752 272 150 0 0 chr6 156705454 156705494 -32574060 - LOR1b LTR ERV1 -19 442 403 * 946 174 119 0 chr6 156705492 156705710 -32573844 - LOR1b LTR ERV1 -217 244 1 3322 141 14 17 chr6 156705722 156706586 -32572968 - LOR1b-int LTR ERV1 -1 8119 7168 370 161 0 0 chr6 156706586 156706648 -32572906 - MER49 LTR ERV1 -852 71 10 1111 188 43 5 chr6 156706648 156706855 -32572699 - LOR1b-int LTR ERV1 -1077 7043 6829 8675 113 30 4 chr6 156706916 156708292 -32571262 - LOR1a-int LTR ERV1 -6172 1948 536 2343 171 29 10 chr6 156708293 156708702 -32570852 - LOR1a-int LTR ERV1 -7702 418 2 2209 154 41 20 chr6 156708709 156709150 -32570404 + LTR7 LTR ERV1 1 450 0 1936 188 77 5 chr6 156709150 156709538 -32570016 - LOR1a LTR ERV1 -1 496 81 466 122 27 0 chr6 156709538 156709612 -32569942 - MER61B-int LTR ERV1 -5140 77 2 1506 180 34 34 chr6 156709616 156709911 -32569643 - MER61B LTR ERV1 -7 418 124 2150 176 8 3 chr6 156709933 156710324 -32569230 + L1MC/D LINE L1 5371 5763 -570 473 158 13 0 chr6 156710326 156710402 -32569152 + LOR1b LTR ERV1 1 77 -384 10811 115 31 18 chr6 156710413 156712097 -32567457 + MER61B-int LTR ERV1 3513 5217 0 1502 175 33 40 chr6 156712120 156712423 -32567131 + MER61B LTR ERV1 125 425 0 592 187 15 4 chr6 156712423 156712587 -32566967 - L1MC1 LINE L1 -775 5371 5208 22 0 0 0 chr6 156713027 156713049 -32566505 + AT_rich Low_complexity Low_complexity 1 22 0 2212 102 3 0 chr6 156713053 156713346 -32566208 + AluY SINE Alu 2 295 -16 21 36 0 0 chr6 156713541 156713569 -32565985 + AT_rich Low_complexity Low_complexity 1 28 0 457 299 37 30 chr6 156713960 156714231 -32565323 + L1MC/D LINE L1 5324 5596 -2212 3142 143 64 32 chr6 156714241 156714809 -32564745 - LTR48B LTR ERV1 -2 642 51 2200 97 0 23 chr6 156714809 156715119 -32564435 - AluY SINE Alu -7 304 2 3142 143 64 32 chr6 156715119 156715172 -32564382 - LTR48B LTR ERV1 -593 51 1 288 0 0 0 chr6 156715758 156715790 -32563764 + (CA)n Simple_repeat Simple_repeat 2 33 0 2209 149 59 19 chr6 156715817 156716240 -32563314 + L1MC1 LINE L1 5878 6317 -16 2003 146 0 0 chr6 156716405 156716699 -32562855 + AluSx SINE Alu 1 294 -18 639 133 23 8 chr6 156716716 156716844 -32562710 + GA-rich Low_complexity Low_complexity 3 132 0 447 310 88 19 chr6 156717128 156717344 -32562210 + MLT1I LTR MaLR 161 391 -18 354 323 64 41 chr6 156717636 156717856 -32561698 + HAL1 LINE L1 1410 1634 -873 1085 251 94 86 chr6 156718866 156719612 -32559942 - MER20B DNA MER1_type -1 782 31 325 310 107 20 chr6 156719723 156719920 -32559634 - L1MC/D LINE L1 -2477 5565 5352 305 343 62 27 chr6 156719923 156720069 -32559485 + L1MC/D LINE L1 5699 5849 -1959 2007 132 40 32 chr6 156720145 156720515 -32559039 + THE1C LTR MaLR 2 374 -1 227 31 31 0 chr6 156721439 156721471 -32558083 + (TA)n Simple_repeat Simple_repeat 1 33 0 5724 153 30 8 chr6 156721763 156723000 -32556554 - L1MA4A LINE L1 -12 6291 5035 2313 170 13 4 chr6 156723024 156723489 -32556065 + L1 LINE L1 3554 4022 -2124 525 293 61 11 chr6 156723490 156723671 -32555883 - MIR SINE MIR -71 191 2 575 78 0 0 chr6 156723973 156724050 -32555504 + MADE1 DNA Mariner 1 77 -3 25 0 0 0 chr6 156727717 156727742 -32551812 + AT_rich Low_complexity Low_complexity 1 25 0 299 143 33 44 chr6 156729389 156729480 -32550074 + (TTATA)n Simple_repeat Simple_repeat 5 94 0 23 0 0 0 chr6 156729531 156729554 -32550000 + AT_rich Low_complexity Low_complexity 1 23 0 455 255 105 26 chr6 156730472 156731829 -32547725 + L1M4 LINE L1 3912 5415 -743 988 307 26 47 chr6 156731829 156732256 -32547298 - LTR16A LTR ERVL 0 450 33 1630 335 66 29 chr6 156732631 156734027 -32545527 - ERVL LTR ERVL -650 5114 3668 2020 175 37 32 chr6 156734040 156734586 -32544968 - MLT2A2 LTR ERVL 0 554 1 751 330 59 53 chr6 156734672 156735332 -32544222 - ERVL LTR ERVL -2210 3554 2891 466 262 48 12 chr6 156735455 156735623 -32543931 - ERVL LTR ERVL -3299 2465 2292 3675 152 38 50 chr6 156736048 156736621 -32542933 - MER50 LTR ERV1 0 734 171 2170 122 3 6 chr6 156736621 156736932 -32542622 - AluSx SINE Alu -2 310 1 3675 152 38 50 chr6 156736932 156737101 -32542453 - MER50 LTR ERV1 -563 171 1 21 0 0 0 chr6 156737816 156737837 -32541717 + AT_rich Low_complexity Low_complexity 1 21 0 2141 256 75 24 chr6 156787958 156788354 -32491200 + L1ME1 LINE L1 5317 5691 -475 2302 203 22 5 chr6 156788363 156788811 -32490743 + MLT1C LTR MaLR 10 465 -2 2141 256 75 24 chr6 156788811 156789198 -32490356 + L1ME1 LINE L1 5691 6140 -26 29 28 0 0 chr6 156789310 156789346 -32490208 + AT_rich Low_complexity Low_complexity 1 36 0 329 286 60 55 chr6 156789351 156789533 -32490021 + L1MEd LINE L1 896 1078 -5041 248 288 30 0 chr6 156789663 156789729 -32489825 - L2 LINE L2 -803 2511 2444 22 0 0 0 chr6 156789786 156789808 -32489746 + AT_rich Low_complexity Low_complexity 1 22 0 3348 215 75 22 chr6 156790157 156790886 -32488668 + L1PA13 LINE L1 1 768 -6019 2190 169 45 5 chr6 156790889 156791286 -32488268 - MSTA LTR MaLR 0 428 16 457 143 26 0 chr6 156791446 156791523 -32488031 - MSTA LTR MaLR -349 79 1 6751 239 43 12 chr6 156791574 156794578 -32484976 + L1PA13 LINE L1 851 3956 -2841 4693 163 14 19 chr6 156794578 156795384 -32484170 + MER52A LTR ERV1 954 1755 0 4677 138 68 8 chr6 156795384 156796553 -32483001 + L1PA15 LINE L1 4936 6159 -6 3160 175 45 6 chr6 156796684 156797311 -32482243 + L1PB4 LINE L1 5338 5988 -168 565 283 16 22 chr6 156797396 156797672 -32481882 + L1M4 LINE L1 3253 3524 -2622 1619 170 24 10 chr6 156797725 156798019 -32481535 + AluSx SINE Alu 1 298 -14 587 271 119 23 chr6 156798671 156798889 -32480665 - MIR SINE MIR -21 241 3 361 248 31 50 chr6 156798965 156799126 -32480428 + MER104 DNA Tc2 8 165 -15 238 294 0 0 chr6 156799196 156799264 -32480290 + A-rich Low_complexity Low_complexity 1 68 0 21 89 0 0 chr6 156799746 156799802 -32479752 + AT_rich Low_complexity Low_complexity 1 56 0 264 55 55 18 chr6 156799929 156799984 -32479570 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 21 0 0 0 chr6 156800294 156800315 -32479239 + AT_rich Low_complexity Low_complexity 1 21 0 5457 75 1 3 chr6 156800521 156801244 -32478310 + L1PA8 LINE L1 5450 6171 -1 22 35 0 0 chr6 156802017 156802046 -32477508 + AT_rich Low_complexity Low_complexity 1 29 0 228 260 0 0 chr6 156802064 156802114 -32477440 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 657 235 117 65 chr6 156802852 156803176 -32476378 - MER58B DNA MER1_type 0 341 1 405 265 167 60 chr6 156804542 156804776 -32474778 - MIR SINE MIR -2 260 2 257 277 18 0 chr6 156805037 156805149 -32474405 + L1M4 LINE L1 3097 3210 -2936 651 253 56 5 chr6 156805371 156805569 -32473985 - L1M4 LINE L1 -1418 4728 4521 975 224 28 39 chr6 156805571 156805826 -32473728 - L1M4 LINE L1 -1854 4292 4041 1778 114 57 70 chr6 156806111 156806410 -32473144 - AluSx SINE Alu -17 295 1 5982 100 32 5 chr6 156806536 156807636 -32471918 - L1PA8 LINE L1 -78 6094 4958 432 328 12 41 chr6 156808843 156809014 -32470540 - MIR SINE MIR -67 195 30 248 358 8 16 chr6 156809080 156809203 -32470351 - L3 LINE CR1 -556 1021 900 23 0 0 0 chr6 156809292 156809315 -32470239 + AT_rich Low_complexity Low_complexity 1 23 0 1998 117 7 42 chr6 156809366 156809673 -32469881 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr6 156810036 156810057 -32469497 + AT_rich Low_complexity Low_complexity 1 21 0 185 81 0 54 chr6 156810313 156810350 -32469204 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 242 200 117 0 chr6 156811707 156811767 -32467787 - LTR37B LTR ERV1 -55 413 347 26 0 0 0 chr6 156811893 156811919 -32467635 + AT_rich Low_complexity Low_complexity 1 26 0 2440 171 63 13 chr6 156812145 156812608 -32466946 - MER66B LTR ERV1 0 486 1 328 221 39 0 chr6 156812747 156812824 -32466730 - L1M4 LINE L1 -877 5269 5190 538 168 0 11 chr6 156812844 156812939 -32466615 + MLT1C LTR MaLR 374 467 0 1071 196 48 0 chr6 156813005 156813235 -32466319 - L1PB4 LINE L1 -3 6153 5913 1685 145 34 30 chr6 156813238 156813431 -32466123 - AluSx SINE Alu -14 298 102 2143 150 8 32 chr6 156813431 156813804 -32465750 + THE1B LTR MaLR 1 364 0 1685 145 34 30 chr6 156813804 156813907 -32465647 - AluSx SINE Alu -210 102 1 3639 161 25 11 chr6 156813907 156814738 -32464816 - L1PB4 LINE L1 -247 5909 5069 269 261 67 8 chr6 156814737 156814856 -32464698 - L1MDa LINE L1 -3212 3328 3203 * 434 248 0 16 chr6 156814876 156815001 -32464553 - MER33 DNA MER1_type -196 128 6 675 243 20 0 chr6 156815042 156815194 -32464360 + MER47A DNA MER2_type 1 155 -211 864 242 62 4 chr6 156815199 156815459 -32464095 - L1MDa LINE L1 -3221 3319 3045 332 244 89 94 chr6 156815493 156815536 -32464018 - L1MDa LINE L1 -4614 1926 1884 2416 36 4 0 chr6 156815536 156815817 -32463737 - AluY SINE Alu -6 305 24 332 244 89 94 chr6 156815817 156815953 -32463601 - L1MDa LINE L1 -4656 1884 1748 237 173 0 19 chr6 156816239 156816291 -32463263 + A-rich Low_complexity Low_complexity 3 53 0 2328 86 7 0 chr6 156816738 156817041 -32462513 + AluSp SINE Alu 1 305 -8 269 365 25 15 chr6 156817588 156817785 -32461769 - HERV16 LTR ERVL -4682 314 116 821 294 62 50 chr6 156817878 156817978 -32461576 - LTR16B LTR ERVL -12 452 355 2229 149 65 54 chr6 156817978 156818482 -32461072 + MER67D LTR ERV1 1 510 -4 821 294 62 50 chr6 156818482 156818802 -32460752 - LTR16B LTR ERVL -109 355 27 504 131 0 24 chr6 156818992 156819076 -32460478 + LTR24B LTR ERV1 4 85 -491 675 274 76 34 chr6 156819129 156819483 -32460071 + LTR24B LTR ERV1 207 575 -1 4316 158 14 8 chr6 156819552 156820291 -32459263 + Tigger2 DNA MER2_type 2 744 -1974 1432 128 58 0 chr6 156820357 156820599 -32458955 + Tigger2 DNA MER2_type 2461 2716 -2 1772 170 47 16 chr6 156820607 156820971 -32458583 + THE1C LTR MaLR 1 375 0 222 91 0 0 chr6 156821941 156821974 -32457580 + (CA)n Simple_repeat Simple_repeat 1 33 0 257 274 164 7 chr6 156822034 156822180 -32457374 + L1MC/D LINE L1 4080 4248 -1898 2040 92 7 11 chr6 156822235 156822557 -32456997 + AluSg SINE Alu 1 321 0 21 71 0 0 chr6 156822650 156822692 -32456862 + AT_rich Low_complexity Low_complexity 1 42 0 655 300 62 76 chr6 156822806 156823436 -32456118 + L1MC/D LINE L1 4613 5233 -913 1163 276 31 51 chr6 156823448 156824020 -32455534 + L1MC/D LINE L1 5261 5821 -1987 2147 205 42 2 chr6 156824025 156824459 -32455095 - LOR1b LTR ERV1 -10 451 1 375 353 19 6 chr6 156824534 156824690 -32454864 - MIR SINE MIR -56 206 49 2425 118 0 11 chr6 156824904 156825270 -32454284 + THE1B LTR MaLR 3 364 0 262 113 16 16 chr6 156827079 156827141 -32452413 + (TTTTA)n Simple_repeat Simple_repeat 1 62 0 6781 26 1 0 chr6 156827141 156827938 -32451616 - L1PA3 LINE L1 -3 6152 5355 1872 151 54 9 chr6 156828052 156828402 -32451152 - MER47A DNA MER2_type 0 366 1 695 238 39 80 chr6 156829858 156830110 -32449444 - L1MD3 LINE L1 -10 7985 7724 351 113 0 0 chr6 156830110 156830163 -32449391 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 695 238 39 80 chr6 156830163 156830221 -32449333 - L1MD3 LINE L1 -271 7724 6049 1696 190 15 6 chr6 156830265 156830596 -32448958 - L1MD3 LINE L1 -408 5951 5618 349 130 13 52 chr6 156830612 156830689 -32448865 + L1MA10 LINE L1 6156 6229 -105 252 310 40 0 chr6 156830700 156830800 -32448754 - L1ME LINE L1 -333 5829 5726 3893 129 9 43 chr6 156830804 156831132 -32448422 - L1PA14 LINE L1 -9 6152 5859 1904 143 3 3 chr6 156831132 156831432 -32448122 - AluSx SINE Alu 0 312 13 3893 129 9 43 chr6 156831432 156831793 -32447761 - L1PA14 LINE L1 -302 5859 5487 1148 198 4 34 chr6 156831800 156832038 -32447516 - AluJo SINE Alu -81 231 1 297 283 67 33 chr6 156832043 156832163 -32447391 - L1ME LINE L1 -426 5736 5613 308 310 92 28 chr6 156832455 156832739 -32446815 - L1ME LINE L1 -869 5277 4976 368 264 28 51 chr6 156832929 156833107 -32446447 - L1ME LINE L1 -1462 4684 4511 301 328 39 5 chr6 156833343 156833547 -32446007 - L1ME LINE L1 -1810 4336 4126 463 311 33 128 chr6 156833552 156833724 -32445830 + L2 LINE L2 2006 2122 -1192 2201 201 17 23 chr6 156833724 156834251 -32445303 - L1MA7 LINE L1 0 6291 5768 463 311 33 128 chr6 156834251 156834467 -32445087 + L2 LINE L2 2122 2357 -957 466 348 65 24 chr6 156834477 156834770 -32444784 - L2 LINE L2 -456 2858 2554 302 261 59 26 chr6 156834820 156834973 -32444581 - L1M4 LINE L1 -1300 4846 4689 440 264 77 0 chr6 156835043 156835198 -32444356 + Charlie8 DNA MER1_type 70 236 -2181 422 105 26 35 chr6 156835207 156835321 -32444233 + (TA)n Simple_repeat Simple_repeat 1 113 0 289 308 164 53 chr6 156837304 156837603 -32441951 + L2 LINE L2 2807 3138 -175 246 315 99 70 chr6 156837884 156838097 -32441457 - MLT1L LTR MaLR -378 237 19 1661 209 8 17 chr6 156838408 156838762 -32440792 - MLT1A1 LTR MaLR -14 351 1 276 238 0 0 chr6 156839439 156839523 -32440031 + (CATA)n Simple_repeat Simple_repeat 2 85 0 183 204 185 19 chr6 156840666 156840720 -32438834 - MIR SINE MIR -64 144 82 240 264 47 62 chr6 156840875 156841004 -32438550 - L2 LINE L2 -70 3243 3117 367 353 128 20 chr6 156841459 156841917 -32437637 + L2 LINE L2 1366 1886 -1428 964 258 42 70 chr6 156841917 156842317 -32437237 + MLT1B LTR MaLR 2 390 0 367 353 128 20 chr6 156842317 156842368 -32437186 + L2 LINE L2 1886 1930 -1384 318 252 75 0 chr6 156842488 156842595 -32436959 + L1ME3A LINE L1 5759 5873 -297 635 180 98 44 chr6 156842650 156842833 -32436721 - L2 LINE L2 -3 3310 3118 208 274 160 9 chr6 156843032 156843138 -32436416 + L2 LINE L2 2217 2338 -976 1021 269 63 32 chr6 156843885 156844297 -32435257 + L1ME3A LINE L1 5703 6127 -43 642 325 59 35 chr6 156844358 156844699 -32434855 - L2 LINE L2 -148 3165 2817 643 136 34 0 chr6 156844775 156844893 -32434661 + LOR1a LTR ERV1 50 171 -326 20495 49 50 2 chr6 156844894 156847666 -32431888 + L1PA2 LINE L1 7 2909 -3237 18919 31 1 0 chr6 156847766 156850837 -32428717 + L1PA2 LINE L1 3083 6155 0 1594 143 93 4 chr6 156850840 156851119 -32428435 + LOR1b LTR ERV1 158 461 0 526 252 86 31 chr6 156851287 156851699 -32427855 + MLT1F1 LTR MaLR 156 567 0 423 238 88 62 chr6 156851699 156851859 -32427695 - L2 LINE L2 -537 2777 2614 297 332 57 21 chr6 156851859 156852052 -32427502 + L2 LINE L2 3112 3311 -2 23 33 0 0 chr6 156852539 156852569 -32426985 + AT_rich Low_complexity Low_complexity 1 30 0 418 374 9 0 chr6 156853016 156853227 -32426327 + HERV16 LTR ERVL 2695 2907 -2089 695 312 37 19 chr6 156853227 156853715 -32425839 - MLT1G1 LTR MaLR 0 595 4 704 386 17 7 chr6 156853757 156854221 -32425333 + HERV16 LTR ERVL 2940 3408 -2246 397 352 64 13 chr6 156854314 156854550 -32425004 + HERV16 LTR ERVL 3607 3854 -1910 496 348 20 30 chr6 156854651 156854947 -32424607 + HERV16 LTR ERVL 4107 4399 -1365 437 321 75 11 chr6 156856251 156856438 -32423116 + MIR SINE MIR 53 251 -11 207 157 20 20 chr6 156856578 156856629 -32422925 + (TA)n Simple_repeat Simple_repeat 2 52 0 1498 156 12 117 chr6 156856853 156857263 -32422291 - MLT1B LTR MaLR 0 390 24 1091 134 57 29 chr6 156857263 156857472 -32422082 - MER101 LTR ERV1 0 474 260 3916 198 44 10 chr6 156858034 156858974 -32420580 - L1MC2 LINE L1 0 6344 5373 1419 251 19 7 chr6 156858977 156859392 -32420162 + L1M4 LINE L1 3521 3940 -2206 1906 108 67 3 chr6 156859393 156859737 -32419817 + LOR1a LTR ERV1 2 367 -130 185 65 32 0 chr6 156860721 156860752 -32418802 + (CA)n Simple_repeat Simple_repeat 2 33 0 241 284 29 10 chr6 156860860 156860962 -32418592 - 7SK RNA RNA -71 122 19 243 178 27 14 chr6 156861330 156861403 -32418151 + GA-rich Low_complexity Low_complexity 2 75 0 283 327 96 0 chr6 156862587 156862691 -32416863 - MIR SINE MIR -101 161 48 1222 191 12 4 chr6 156865567 156865813 -32413741 - MER101 LTR ERV1 -226 248 1 228 326 21 11 chr6 156866769 156866864 -32412690 - L3 LINE CR1 -32 1545 1450 274 344 109 21 chr6 156867503 156867695 -32411859 + L3 LINE CR1 1170 1378 -199 232 178 27 0 chr6 156867742 156867815 -32411739 + (TA)n Simple_repeat Simple_repeat 2 76 0 394 291 69 23 chr6 156867822 156867997 -32411557 + LTR33 LTR ERVL 33 215 -306 24 32 0 0 chr6 156868740 156868771 -32410783 + AT_rich Low_complexity Low_complexity 1 31 0 489 30 2 0 chr6 156869183 156869253 -32410301 + THE1B LTR MaLR 1 71 -284 5118 108 7 4 chr6 156869257 156870010 -32409544 + THE1B-int LTR MaLR 826 1580 0 2095 115 75 35 chr6 156870012 156870360 -32409194 + THE1B LTR MaLR 3 364 0 25 0 0 0 chr6 156871987 156872012 -32407542 + AT_rich Low_complexity Low_complexity 1 25 0 334 284 114 40 chr6 156872180 156872356 -32407198 - MER5A DNA MER1_type 0 189 1 24 0 0 0 chr6 156872818 156872842 -32406712 + AT_rich Low_complexity Low_complexity 1 24 0 1279 286 62 36 chr6 156872971 156873349 -32406205 + L1MEc LINE L1 215 582 -5814 2286 261 7 21 chr6 156873349 156873917 -32405637 - REP3 LTR ERV 0 562 3 1279 286 62 36 chr6 156873917 156874318 -32405236 + L1MEc LINE L1 582 1014 -5382 2023 143 44 49 chr6 156874340 156874705 -32404849 + THE1B LTR MaLR 1 363 -1 25624 123 19 13 chr6 156874771 156881164 -32398390 + L1PA7 LINE L1 16 6467 -2 226 160 133 27 chr6 156881306 156881381 -32398173 + L1MEc LINE L1 1087 1169 -5046 387 335 113 42 chr6 156881898 156882547 -32397007 + L2 LINE L2 2028 2769 -545 1361 253 34 29 chr6 156882942 156883389 -32396165 + L1ME2 LINE L1 5709 6157 -7 1794 129 47 78 chr6 156884543 156884930 -32394624 + THE1C LTR MaLR 1 375 0 9465 126 35 36 chr6 156884930 156886512 -32393042 + THE1C-int LTR MaLR 1 1580 0 1533 157 55 81 chr6 156886514 156886897 -32392657 + THE1C LTR MaLR 3 375 0 1743 219 22 71 chr6 156887406 156888037 -32391517 - L1MCb LINE L1 -5088 957 358 649 142 22 0 chr6 156888038 156888172 -32391382 - L1MCb LINE L1 -5148 897 761 546 281 94 33 chr6 156888184 156888483 -32391071 - L1MCb LINE L1 -6022 542 226 1665 232 32 53 chr6 156888505 156889070 -32390484 + LTR38 LTR ERV1 4 556 0 2814 219 21 91 chr6 156889070 156889965 -32389589 + LTR38-int LTR ERV1 1 833 -953 5026 324 61 65 chr6 156890376 156891609 -32387945 + LTR38-int LTR ERV1 475 1711 -5411 2025 186 73 2 chr6 156891609 156892007 -32387547 - MSTB LTR MaLR 0 426 1 5026 324 61 65 chr6 156892007 156893570 -32385984 + LTR38-int LTR ERV1 1711 3278 -3844 2813 3 0 0 chr6 156893570 156893873 -32385681 - AluY SINE Alu -8 303 1 5026 324 61 65 chr6 156893873 156896433 -32383121 + LTR38-int LTR ERV1 3278 5846 -1276 1496 197 3 36 chr6 156896433 156896737 -32382817 + AluJo SINE Alu 2 295 -17 5026 324 61 65 chr6 156896737 156896907 -32382647 + LTR38-int LTR ERV1 5846 6015 -1107 194 279 0 0 chr6 156896907 156896950 -32382604 - L3b LINE CR1 -179 1404 1362 5026 324 61 65 chr6 156896950 156897790 -32381764 + LTR38-int LTR ERV1 6015 6862 -260 711 229 28 6 chr6 156897985 156898164 -32381390 + LTR38 LTR ERV1 1 183 -373 222 170 57 19 chr6 156898291 156898344 -32381210 + L2 LINE L2 2651 2705 -609 1906 140 42 31 chr6 156898367 156898725 -32380829 - THE1B LTR MaLR 0 364 3 11755 91 8 0 chr6 156898727 156900294 -32379260 - THE1B-int LTR MaLR 0 1580 1 1845 145 61 47 chr6 156900294 156900653 -32378901 - THE1B LTR MaLR 0 364 1 369 256 74 16 chr6 156900653 156900774 -32378780 + L1M4 LINE L1 4552 4679 -1467 1846 221 22 80 chr6 156900774 156901362 -32378192 + MLT2B3 LTR ERVL 1 554 0 262 294 0 0 chr6 156901383 156901451 -32378103 + GA-rich Low_complexity Low_complexity 2 69 0 344 58 0 19 chr6 156901480 156901532 -32378022 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 1563 163 13 13 chr6 156901533 156901840 -32377714 + LTR8A LTR ERV1 270 576 -151 33533 50 2 2 chr6 156901843 156906255 -32373299 + L1PA3 LINE L1 1 4410 -1736 8234 34 1 1 chr6 156906355 156908183 -32371371 + L1PA3 LINE L1 4341 6152 -3 724 210 25 6 chr6 156908196 156908353 -32371201 + LTR8A LTR ERV1 568 727 0 234 0 0 0 chr6 156908472 156908498 -32371056 + (A)n Simple_repeat Simple_repeat 1 26 0 705 177 172 27 chr6 156909102 156909288 -32370266 - MER46A DNA MER2_type -5 231 19 29 28 0 0 chr6 156909306 156909342 -32370212 + AT_rich Low_complexity Low_complexity 1 36 0 2098 109 0 0 chr6 156911721 156911997 -32367557 - AluSc SINE Alu -33 276 1 316 210 25 12 chr6 156913771 156913852 -32365702 - MIR SINE MIR -107 155 74 284 272 37 0 chr6 156914223 156914304 -32365250 - MIR3 SINE MIR -28 180 97 212 200 125 12 chr6 156915259 156915339 -32364215 + MER5C DNA MER1_type 1 89 -235 180 77 0 0 chr6 156916160 156916186 -32363368 + (TTTTTA)n Simple_repeat Simple_repeat 3 28 0 1970 240 57 12 chr6 156917187 156917870 -32361684 - L1M4 LINE L1 -1009 5137 4424 10624 187 25 23 chr6 156918593 156920822 -32358732 + L1MB8 LINE L1 715 2954 -3894 1553 107 65 0 chr6 156920822 156921038 -32358516 + MER30 DNA MER1_type 1 230 0 10624 187 25 23 chr6 156921038 156922333 -32357221 + L1MB8 LINE L1 2954 4245 -2603 748 140 0 0 chr6 156972333 156972447 -32307107 - THE1-int LTR MaLR -504 1076 963 702 202 8 0 chr6 156972447 156972571 -32306983 + MER52-int LTR ERV1 1282 1406 -5685 677 101 0 0 chr6 156972623 156972722 -32306832 - AluSg/x SINE Alu -9 301 203 3493 177 35 60 chr6 156972722 156972832 -32306722 + L1MB8 LINE L1 6074 6185 -695 1797 203 37 8 chr6 156972832 156973187 -32306367 + MLT1A1 LTR MaLR 1 365 0 3493 177 35 60 chr6 156973187 156973899 -32305655 + L1MB8 LINE L1 6185 6876 -4 2055 129 0 0 chr6 156974104 156974399 -32305155 + AluSx SINE Alu 1 295 -17 569 143 20 0 chr6 156975193 156975291 -32304263 + AluJ/FLAM SINE Alu 1 100 -212 30 59 0 0 chr6 156975981 156976032 -32303522 + AT_rich Low_complexity Low_complexity 1 51 0 25 31 0 0 chr6 156976197 156976229 -32303325 + AT_rich Low_complexity Low_complexity 1 32 0 31 26 0 0 chr6 156976690 156976728 -32302826 + AT_rich Low_complexity Low_complexity 1 38 0 444 294 49 22 chr6 156977941 156978125 -32301429 - MIR SINE MIR -30 232 44 253 431 10 0 chr6 156978106 156978208 -32301346 + MER91A DNA MER1_type 67 169 -27 * 2314 121 8 27 chr6 156979011 156979382 -32300172 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr6 156980502 156980528 -32299026 + AT_rich Low_complexity Low_complexity 1 26 0 618 337 83 23 chr6 156982032 156982430 -32297124 - LTR16A LTR ERVL -6 444 23 432 342 97 4 chr6 156982725 156982962 -32296592 - MIR SINE MIR 0 262 4 1788 289 66 26 chr6 156983267 156984024 -32295530 + L1MEc LINE L1 35 821 -5575 4115 162 16 3 chr6 156984033 156984723 -32294831 + Tigger1 DNA MER2_type 7 705 -1713 2282 178 45 72 chr6 156984723 156985354 -32294200 + LTR38B LTR ERV1 1 541 0 9096 128 29 33 chr6 156985354 156986879 -32292675 + Tigger1 DNA MER2_type 702 2221 -197 523 222 89 15 chr6 156986879 156987014 -32292540 - MER58A DNA MER1_type 0 146 2 439 293 85 14 chr6 156987061 156987344 -32292210 + L1MEc LINE L1 1075 1377 -5019 325 339 56 21 chr6 156987533 156987737 -32291817 - MIR SINE MIR -30 232 22 345 311 37 7 chr6 156987992 156988127 -32291427 - MIR3 SINE MIR 0 208 70 225 234 0 16 chr6 156988598 156988662 -32290892 - L1MCa LINE L1 -4358 1857 1795 268 292 83 21 chr6 156988681 156988777 -32290777 + L2 LINE L2 3196 3297 -16 8119 162 25 52 chr6 156988856 156989408 -32290146 - L1MA9 LINE L1 -2 6310 5745 216 0 0 0 chr6 156989408 156989432 -32290122 + (TG)n Simple_repeat Simple_repeat 1 24 0 8119 162 25 52 chr6 156989432 156990097 -32289457 - L1MA9 LINE L1 -567 5745 5064 195 42 0 0 chr6 156990097 156990121 -32289433 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8119 162 25 52 chr6 156990121 156991120 -32288434 - L1MA9 LINE L1 -1248 5064 4165 1972 136 141 21 chr6 156991120 156991502 -32288052 + MSTA LTR MaLR 1 428 0 8119 162 25 52 chr6 156991502 156992103 -32287451 - L1MA9 LINE L1 -2147 4165 3550 219 255 39 0 chr6 156992345 156992396 -32287158 + L2 LINE L2 3244 3296 -17 259 310 92 21 chr6 156992964 156993106 -32286448 - MIR SINE MIR -76 186 35 334 257 11 106 chr6 156994104 156994283 -32285271 + MLT1H-int LTR MaLR 1023 1184 -187 306 256 139 0 chr6 156994474 156994560 -32284994 + MLT1H LTR MaLR 58 155 -394 210 289 66 0 chr6 156995449 156995525 -32284029 + L2 LINE L2 3196 3276 -37 198 0 0 0 chr6 156996008 156996030 -32283524 + (GCTG)n Simple_repeat Simple_repeat 2 23 0 13422 27 2 0 chr6 156998641 157001011 -32278543 - L1PA3 LINE L1 0 6155 3783 199 294 20 0 chr6 157001514 157001565 -32277989 - L2 LINE L2 -5 3267 3216 475 274 37 7 chr6 157001723 157001858 -32277696 - MER97c DNA MER1_type? -935 155 17 1082 243 18 4 chr6 157001876 157002152 -32277402 - L1MCa LINE L1 -5539 857 578 491 261 134 40 chr6 157002488 157002741 -32276813 - L1MCa LINE L1 -5834 562 286 339 290 83 47 chr6 157002988 157003421 -32276133 + L1 LINE L1 2781 3244 -2902 2977 259 55 49 chr6 157003434 157004650 -32274904 + L1MEc LINE L1 1961 3252 -2963 2198 97 3 3 chr6 157004650 157004949 -32274605 - AluSg SINE Alu -11 299 1 2977 259 55 49 chr6 157004949 157005598 -32273956 + L1MEc LINE L1 3252 3895 -2320 262 262 155 0 chr6 157005714 157005817 -32273737 + L1MEc LINE L1 4129 4247 -1968 1327 238 102 47 chr6 157005832 157005949 -32273605 + L1MEc LINE L1 4209 4318 -1897 1771 184 0 0 chr6 157005949 157006237 -32273317 + AluJo SINE Alu 1 288 -24 1327 238 102 47 chr6 157006237 157006431 -32273123 + L1MEc LINE L1 4318 4500 -1715 2198 99 3 0 chr6 157006431 157006725 -32272829 - AluSx SINE Alu -12 300 6 1327 238 102 47 chr6 157006725 157007117 -32272437 + L1MEc LINE L1 4500 4952 -1263 1447 162 103 0 chr6 157007927 157008198 -32271356 + AluJo SINE Alu 14 312 0 855 266 46 35 chr6 157008499 157008758 -32270796 + MIR SINE MIR 1 262 0 399 280 180 13 chr6 157008915 157009065 -32270489 + MER5B DNA MER1_type 1 175 -3 199 314 182 0 chr6 157011439 157011560 -32267994 + L2 LINE L2 2894 3036 -236 516 282 163 42 chr6 157011666 157012095 -32267459 - L2 LINE L2 -4 3309 2829 276 370 79 20 chr6 157012216 157012419 -32267135 + L2 LINE L2 1686 1900 -1414 605 220 163 18 chr6 157012548 157012848 -32266706 - L1MC/D LINE L1 -743 5386 5133 521 223 64 41 chr6 157012910 157013162 -32266392 - L1MEd LINE L1 -4865 1254 1010 965 195 81 106 chr6 157013450 157013809 -32265745 + Charlie2b DNA MER1_type 49 398 -2464 1753 97 4 0 chr6 157013847 157014075 -32265479 + AluSp SINE Alu 71 299 -14 515 263 237 0 chr6 157014424 157014648 -32264906 + Charlie2b DNA MER1_type 394 670 -2112 1018 245 122 80 chr6 157014730 157014898 -32264656 + Charlie2a DNA MER1_type 1511 1670 -1192 2171 107 3 0 chr6 157014898 157015187 -32264367 + AluSq SINE Alu 1 290 -23 186 43 0 0 chr6 157015191 157015214 -32264340 + (GAA)n Simple_repeat Simple_repeat 2 24 0 1018 245 122 80 chr6 157015214 157015718 -32263836 + Charlie2a DNA MER1_type 1672 2217 -645 463 217 212 20 chr6 157015721 157015924 -32263630 + Charlie2a DNA MER1_type 2566 2807 -55 353 315 24 31 chr6 157016340 157016467 -32263087 + L2 LINE L2 3187 3312 -1 4416 185 90 19 chr6 157016954 157017983 -32261571 - L1MD2 LINE L1 0 6359 5257 271 310 135 21 chr6 157018385 157018666 -32260888 + L1ME LINE L1 5550 5862 -259 383 370 79 61 chr6 157018730 157019171 -32260383 + L2 LINE L2 2816 3264 -8 2074 89 11 0 chr6 157020046 157020316 -32259238 + AluSg SINE Alu 15 287 -23 22 35 0 0 chr6 157020949 157020978 -32258576 + AT_rich Low_complexity Low_complexity 1 29 0 371 360 109 5 chr6 157021447 157021658 -32257896 + MIR SINE MIR 29 261 -1 1098 251 146 18 chr6 157021680 157022223 -32257331 - L1MEc LINE L1 -4042 2354 1743 1837 158 0 14 chr6 157022224 157022515 -32257039 + AluSx SINE Alu 1 287 -25 1660 303 67 36 chr6 157022526 157022625 -32256929 - L1MEc LINE L1 -5242 1154 1059 2127 106 0 3 chr6 157022625 157022959 -32256595 - AluSc SINE Alu 0 333 1 1660 303 67 36 chr6 157022959 157023941 -32255613 - L1MEc LINE L1 -5337 1059 39 220 344 196 24 chr6 157025721 157026174 -32253380 - L2 LINE L2 -2058 1256 726 703 295 57 79 chr6 157026218 157026622 -32252932 - MLT1J LTR MaLR -34 477 83 221 317 93 38 chr6 157026695 157026878 -32252676 - L2 LINE L2 -2907 407 215 367 196 63 63 chr6 157026922 157027111 -32252443 - Charlie7 DNA MER1_type -5 2607 2419 443 255 78 43 chr6 157027976 157028117 -32251437 - L2 LINE L2 -1 3312 3167 321 404 68 4 chr6 157028303 157028538 -32251016 + L1MC/D LINE L1 5420 5669 -2139 21 57 0 0 chr6 157029278 157029313 -32250241 + AT_rich Low_complexity Low_complexity 1 35 0 1773 138 0 45 chr6 157029761 157030072 -32249482 - AluSx SINE Alu -15 297 1 2190 84 0 11 chr6 157031883 157032215 -32247339 - AluY SINE Alu 0 329 1 27 0 0 0 chr6 157032836 157032863 -32246691 + AT_rich Low_complexity Low_complexity 1 27 0 241 156 233 0 chr6 157033663 157033753 -32245801 - Charlie5 DNA MER1_type -32 2580 2470 1729 151 33 16 chr6 157033769 157034074 -32245480 - AluJb SINE Alu -2 310 1 2219 110 0 0 chr6 157034247 157034539 -32245015 - AluSq SINE Alu -19 294 3 1093 281 60 42 chr6 157034858 157035160 -32244394 - MER20B DNA MER1_type -294 489 173 2058 115 3 10 chr6 157035160 157035455 -32244099 - AluSc SINE Alu -16 293 1 1093 281 60 42 chr6 157035455 157035632 -32243922 - MER20B DNA MER1_type -610 173 1 202 186 34 51 chr6 157035823 157035882 -32243672 - L2 LINE L2 -33 3239 3182 844 88 9 0 chr6 157036548 157036662 -32242892 - AluY SINE Alu -143 168 54 3082 182 43 7 chr6 157037197 157037779 -32241775 + MSTB-int LTR MaLR 1048 1650 -1 1934 183 76 0 chr6 157037789 157038182 -32241372 + MSTB LTR MaLR 4 426 0 22 0 0 0 chr6 157039002 157039024 -32240530 + AT_rich Low_complexity Low_complexity 1 22 0 205 237 34 34 chr6 157039646 157039705 -32239849 - MIR SINE MIR -69 139 81 653 191 228 44 chr6 157039711 157039983 -32239571 - MER5C DNA MER1_type 0 324 3 649 286 120 13 chr6 157040417 157040651 -32238903 + MIR SINE MIR 1 259 -3 1244 250 64 85 chr6 157041110 157041754 -32237800 + L1ME2 LINE L1 1237 1866 -4530 1094 281 60 29 chr6 157041802 157042325 -32237229 + L1ME2 LINE L1 2154 2649 -3566 1447 233 78 12 chr6 157042352 157042773 -32236781 + L1ME2 LINE L1 5547 5995 -238 1536 222 129 38 chr6 157042939 157044018 -32235536 + L1MC4a LINE L1 6374 7583 -459 289 233 106 12 chr6 157044062 157044172 -32235382 + L1MC4 LINE L1 7600 7715 -93 341 161 0 0 chr6 157044178 157044234 -32235320 + L1MC4 LINE L1 7847 7902 -140 207 0 0 0 chr6 157044241 157044264 -32235290 + (TA)n Simple_repeat Simple_repeat 1 23 0 2270 88 0 0 chr6 157044285 157044579 -32234975 - AluY SINE Alu -17 294 1 210 71 0 0 chr6 157044602 157044630 -32234924 + (TA)n Simple_repeat Simple_repeat 1 28 0 241 301 21 0 chr6 157044652 157044745 -32234809 + L1MC4 LINE L1 7929 8023 -19 1891 251 151 82 chr6 157045343 157046278 -32233276 - L2 LINE L2 -341 2973 1913 230 114 0 0 chr6 157046278 157046313 -32233241 - MADE1 DNA Mariner -45 35 1 1891 251 151 82 chr6 157046313 157046483 -32233071 - L2 LINE L2 -1401 1913 1756 370 336 94 13 chr6 157047109 157047258 -32232296 - L3b LINE CR1 -14 1569 1409 285 304 78 29 chr6 157047413 157047515 -32232039 + MIR SINE MIR 45 151 -57 232 235 0 20 chr6 157047623 157047674 -32231880 + L2 LINE L2 3182 3231 -41 220 333 129 0 chr6 157049020 157049113 -32230441 - L2 LINE L2 -17 3296 3192 452 291 245 32 chr6 157049359 157049954 -32229600 - L2 LINE L2 -397 2917 2196 277 264 97 39 chr6 157050116 157050271 -32229283 - Charlie8 DNA MER1_type -2168 249 86 280 356 20 50 chr6 157050372 157050574 -32228980 - L2 LINE L2 -1244 2070 1875 1757 141 30 16 chr6 157051051 157051355 -32228199 - AluSx SINE Alu -4 308 1 1995 109 74 0 chr6 157051372 157051656 -32227898 - AluSg SINE Alu -2 308 4 519 295 38 38 chr6 157051680 157051863 -32227691 - MER5A DNA MER1_type -5 184 2 227 254 99 0 chr6 157052006 157052077 -32227477 - MIR SINE MIR -89 173 96 2279 71 0 10 chr6 157052906 157053203 -32226351 - AluY SINE Alu -17 294 1 537 288 73 56 chr6 157053817 157053867 -32225687 - L1M4 LINE L1 -2210 3936 3888 903 239 67 5 chr6 157053867 157054076 -32225478 - MER58A DNA MER1_type 0 224 3 537 288 73 56 chr6 157054076 157054365 -32225189 - L1M4 LINE L1 -2258 3888 3591 1501 167 133 0 chr6 157055260 157055583 -32223971 + MER47A DNA MER2_type 1 366 0 348 244 0 0 chr6 157055649 157055727 -32223827 - L1MC4 LINE L1 -2 8040 7963 243 0 0 0 chr6 157055849 157055876 -32223678 + (TG)n Simple_repeat Simple_repeat 2 28 0 2128 224 155 23 chr6 157055979 157056791 -32222763 - L1MC4 LINE L1 -131 7911 6993 3638 139 45 3 chr6 157056795 157057372 -32222182 + ERVL LTR ERVL 2481 3081 -2683 3177 265 124 24 chr6 157057372 157059718 -32219836 - L1MEc LINE L1 -1432 4648 2047 271 314 144 23 chr6 157059739 157060169 -32219385 - L1MEc LINE L1 -5244 826 345 267 323 84 19 chr6 157060175 157060330 -32219224 - L1MEc LINE L1 -5846 224 60 2190 64 0 74 chr6 157060941 157061252 -32218302 + AluY SINE Alu 3 290 -21 453 36 0 0 chr6 157061266 157061321 -32218233 + (TG)n Simple_repeat Simple_repeat 2 56 0 26 30 0 0 chr6 157061406 157061439 -32218115 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr6 157061901 157061933 -32217621 + AT_rich Low_complexity Low_complexity 1 32 0 24 77 0 0 chr6 157062515 157062567 -32216987 + AT_rich Low_complexity Low_complexity 1 52 0 249 286 54 41 chr6 157063281 157063428 -32216126 + MIR SINE MIR 101 249 -13 292 256 13 0 chr6 157063714 157063792 -32215762 - MER116 DNA Mariner -1 79 1 27 49 0 0 chr6 157064371 157064412 -32215142 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr6 157064743 157064766 -32214788 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr6 157065300 157065324 -32214230 + AT_rich Low_complexity Low_complexity 1 24 0 727 235 107 16 chr6 157065490 157065733 -32213821 + L1MC4a LINE L1 5648 5912 -1896 1954 102 67 3 chr6 157067887 157068170 -32211384 - AluSc SINE Alu -8 301 1 245 358 58 0 chr6 157068442 157068562 -32210992 - HAL1 LINE L1 -2377 130 4 483 320 51 0 chr6 157068563 157068738 -32210816 + HAL1 LINE L1 1580 1763 -744 2610 232 30 62 chr6 157069179 157070129 -32209425 + L1MC1 LINE L1 4111 5029 -1117 6009 175 101 15 chr6 157070129 157070948 -32208606 + L1MA3 LINE L1 1 749 -5145 2085 104 10 16 chr6 157070948 157071255 -32208299 + AluSx SINE Alu 1 305 -7 6009 175 101 15 chr6 157071255 157072104 -32207450 + L1MA3 LINE L1 749 1828 -4066 1592 113 12 86 chr6 157072161 157072487 -32207067 + L1MA3 LINE L1 4320 4621 -1707 4626 172 79 20 chr6 157072865 157074338 -32205216 + L1MA3 LINE L1 4639 6211 -276 654 281 37 80 chr6 157073879 157074467 -32205087 + L1MC2 LINE L1 5741 6303 -223 * 4453 185 27 6 chr6 157074451 157074630 -32204924 + L1MC1 LINE L1 5010 5184 -1149 1860 81 0 8 chr6 157074630 157074876 -32204678 + AluY SINE Alu 55 298 -13 4453 185 27 6 chr6 157074876 157075726 -32203828 + L1MC1 LINE L1 5184 6058 -275 1664 138 197 11 chr6 157075727 157076088 -32203466 - MSTA LTR MaLR 0 428 1 7933 156 28 34 chr6 157076088 157077527 -32202027 - MSTA-int LTR MaLR 0 1580 151 944 132 255 19 chr6 157077529 157077741 -32201813 - MSTA LTR MaLR -161 267 6 1534 167 33 0 chr6 157077741 157078016 -32201538 + L1MC1 LINE L1 6050 6333 0 2379 61 0 10 chr6 157078303 157078599 -32200955 + AluY SINE Alu 1 293 -18 187 321 0 0 chr6 157078602 157078658 -32200896 + MIR SINE MIR 175 230 -32 208 176 59 0 chr6 157080492 157080543 -32199011 - L2 LINE L2 -4 3268 3215 676 199 210 6 chr6 157082949 157083125 -32196429 + MER58A DNA MER1_type 1 212 -12 295 275 156 0 chr6 157083610 157083719 -32195835 + MIR SINE MIR 127 252 -10 463 199 106 50 chr6 157083944 157084085 -32195469 - L2 LINE L2 0 3313 3165 477 207 108 0 chr6 157084116 157084227 -32195327 + MER5A DNA MER1_type 59 181 -8 350 177 83 31 chr6 157084289 157084385 -32195169 + MER5A DNA MER1_type 5 105 -84 * 1065 269 40 68 chr6 157084376 157084818 -32194736 - L2 LINE L2 -163 3150 2625 1549 135 26 80 chr6 157084818 157085130 -32194424 + AluSx SINE Alu 1 295 -17 1065 269 40 68 chr6 157085130 157085358 -32194196 - L2 LINE L2 -688 2625 2392 771 225 81 0 chr6 157085943 157086116 -32193438 - MIR SINE MIR -1 261 75 628 241 48 66 chr6 157087141 157087369 -32192185 + MLT1B LTR MaLR 1 224 -166 555 266 145 0 chr6 157088920 157089127 -32190427 + L1M4 LINE L1 2355 2591 -3555 234 151 0 38 chr6 157089595 157089648 -32189906 + (TA)n Simple_repeat Simple_repeat 2 52 0 181 337 74 11 chr6 157089894 157089989 -32189565 - L2 LINE L2 -51 3221 3121 1807 157 23 13 chr6 157090372 157090660 -32188894 - MLT1A1 LTR MaLR 0 365 81 6262 102 16 13 chr6 157090660 157092532 -32187022 - L1PA11 LINE L1 -1 6173 4303 * 10858 70 6 7 chr6 157092528 157094766 -32184788 - L1PA6 LINE L1 -5 6149 3911 1807 157 23 13 chr6 157092532 157094780 -32184774 - MLT1A1 LTR MaLR -284 81 63 1769 115 3 0 chr6 157094759 157095046 -32184508 + L1P LINE L1 3634 3921 -2225 * 461 91 0 0 chr6 157095041 157095107 -32184447 + L1P LINE L1 4251 4316 -1830 * 2074 125 0 3 chr6 157095107 157095395 -32184159 + AluSx SINE Alu 3 289 -23 324 130 0 0 chr6 157095406 157095452 -32184102 + L1P3 LINE L1 10 55 -6406 3405 194 28 14 chr6 157095462 157096178 -32183376 + L1P3 LINE L1 485 1210 -5251 2951 70 58 26 chr6 157096298 157096728 -32182826 - MLT2A1 LTR ERVL 0 444 1 579 296 31 6 chr6 157096818 157096980 -32182574 - MIR3 SINE MIR -8 200 35 255 198 198 59 chr6 157097569 157097670 -32181884 + Charlie4a DNA MER1_type 2 116 -392 631 100 18 9 chr6 157097672 157097782 -32181772 + (TTCCC)n Simple_repeat Simple_repeat 1 111 0 2069 118 4 0 chr6 157097783 157098063 -32181491 - AluSp SINE Alu -32 281 1 1079 192 40 20 chr6 157098064 157098360 -32181194 + Charlie4a DNA MER1_type 100 401 -107 1457 208 83 59 chr6 157098360 157098851 -32180703 + MLT1D LTR MaLR 3 505 0 294 111 222 0 chr6 157098854 157098926 -32180628 + Charlie4a DNA MER1_type 406 493 -15 1974 144 0 0 chr6 157100536 157100847 -32178707 - AluSx SINE Alu 0 311 1 835 282 83 22 chr6 157101015 157101405 -32178149 - MLT1J2 LTR MaLR -23 423 18 286 328 104 20 chr6 157102182 157102383 -32177171 - MIR SINE MIR -22 240 23 274 180 16 107 chr6 157102585 157102637 -32176917 - L1ME4a LINE L1 -1 6120 6084 2316 118 0 0 chr6 157102637 157102950 -32176604 + AluSq SINE Alu 1 313 0 274 180 16 107 chr6 157102950 157103019 -32176535 - L1ME4a LINE L1 -37 6084 6010 242 319 11 22 chr6 157103900 157103991 -32175563 + MIR SINE MIR 63 152 -110 290 304 234 0 chr6 157104911 157105069 -32174485 + MIR SINE MIR 20 214 -48 1394 136 0 0 chr6 157105078 157105269 -32174285 + AluSx SINE Alu 5 195 -117 1808 84 4 0 chr6 157107255 157107482 -32172072 + AluSc SINE Alu 69 296 -13 212 376 56 37 chr6 157107506 157107668 -32171886 - MIR3 SINE MIR -28 180 16 201 288 63 18 chr6 157108308 157108419 -32171135 + L2 LINE L2 2245 2360 -954 239 250 0 16 chr6 157108438 157108502 -32171052 + MLT1F1 LTR MaLR 45 107 -460 2727 184 19 28 chr6 157108503 157109122 -32170432 + L1MC3 LINE L1 7172 7785 0 976 196 0 6 chr6 157110497 157110670 -32168884 + AluJb SINE Alu 34 205 -107 200 296 32 3 chr6 157111331 157111410 -32168144 + MIR SINE MIR 32 110 -107 22 0 0 0 chr6 157112008 157112030 -32167524 + AT_rich Low_complexity Low_complexity 1 22 0 1869 152 7 3 chr6 157113746 157114062 -32165492 + AluSx SINE Alu 1 317 0 3261 139 44 2 chr6 157114196 157114744 -32164810 - L1PA16 LINE L1 -1 6165 5595 2412 96 0 3 chr6 157115756 157116069 -32163485 + AluSq SINE Alu 1 312 -1 271 303 40 10 chr6 157116295 157116394 -32163160 + MIR SINE MIR 94 195 -67 1514 89 4 77 chr6 157116449 157116611 -32162943 + MER30 DNA MER1_type 1 140 -90 2455 68 0 0 chr6 157116611 157116905 -32162649 + AluY SINE Alu 1 294 -17 1514 89 4 77 chr6 157116905 157116990 -32162564 + MER30 DNA MER1_type 140 230 0 846 175 137 0 chr6 157117003 157117186 -32162368 - MIR SINE MIR -21 241 34 1146 261 15 18 chr6 157117192 157117522 -32162032 + MER69 DNA AcHobo 8 336 -890 995 210 94 32 chr6 157117851 157118222 -32161332 + MER69 DNA AcHobo 1842 2235 -291 743 168 40 8 chr6 157118222 157118347 -32161207 + FLAM_C SINE Alu 1 129 -14 327 210 184 34 chr6 157118357 157118561 -32160993 + MER69 DNA AcHobo 2257 2502 -24 1709 162 54 14 chr6 157118561 157118857 -32160697 + AluJo SINE Alu 1 308 -4 327 210 184 34 chr6 157118857 157118885 -32160669 + MER69 DNA AcHobo 2502 2524 -2 298 195 69 46 chr6 157119647 157119734 -32159820 - MER5B DNA MER1_type -2 176 88 992 173 29 24 chr6 157119951 157120159 -32159395 + MER3 DNA MER1_type 1 209 0 467 176 0 0 chr6 157120787 157120861 -32158693 + tRNA-Gly-GGC tRNA tRNA 1 74 0 2037 129 27 0 chr6 157120875 157121170 -32158384 + AluSx SINE Alu 1 303 -9 2529 78 0 0 chr6 157121176 157121482 -32158072 + AluY SINE Alu 1 306 -5 3112 123 14 10 chr6 157121563 157122061 -32157493 + LTR3b LTR ERVK 1 500 0 359 303 32 46 chr6 157122750 157122968 -32156586 - L1MEc LINE L1 -6075 321 107 462 324 131 20 chr6 157123047 157123147 -32156407 + L1M4 LINE L1 2227 2315 -3831 2272 88 0 7 chr6 157123147 157123455 -32156099 + AluY SINE Alu 1 306 0 462 324 131 20 chr6 157123455 157123803 -32155751 + L1M4 LINE L1 2315 2726 -3420 33 25 0 0 chr6 157123829 157123869 -32155685 + AT_rich Low_complexity Low_complexity 1 40 0 383 304 114 19 chr6 157123884 157124147 -32155407 + L1M4 LINE L1 2875 3162 -2984 27 81 0 0 chr6 157124322 157124384 -32155170 + AT_rich Low_complexity Low_complexity 1 62 0 1839 171 110 6 chr6 157124960 157125323 -32154231 + MSTB LTR MaLR 26 426 0 4867 135 15 1 chr6 157125524 157125799 -32153755 + L1PA16 LINE L1 5333 5603 -588 503 117 0 0 chr6 157125799 157125876 -32153678 + MADE1 DNA Mariner 3 79 -1 4867 135 15 1 chr6 157125876 157126448 -32153106 + L1PA16 LINE L1 5603 6191 0 1821 163 7 7 chr6 157126949 157127243 -32152311 + AluJb SINE Alu 2 295 -17 445 259 83 64 chr6 157127497 157127890 -32151664 + L1ME LINE L1 5428 5823 -298 242 289 52 0 chr6 157128485 157128582 -32150972 + MER103 DNA DNA 17 118 -48 529 251 101 5 chr6 157129381 157129580 -32149974 - LTR16B LTR ERVL 0 464 247 785 229 54 63 chr6 157129634 157129966 -32149588 - L1MC5 LINE L1 -1008 6953 6625 57 28 0 0 chr6 157130337 157130408 -32149146 + AT_rich Low_complexity Low_complexity 1 71 0 211 219 0 41 chr6 157130546 157130619 -32148935 + (TTATA)n Simple_repeat Simple_repeat 1 70 0 562 219 109 5 chr6 157130663 157130864 -32148690 - L1MC5 LINE L1 -1875 5933 5712 487 229 38 22 chr6 157130868 157131051 -32148503 - L1MC5 LINE L1 -2309 5499 5314 2212 99 7 3 chr6 157131338 157131640 -32147914 - AluSq SINE Alu -10 303 1 2149 133 45 14 chr6 157133005 157133358 -32146196 + THE1B LTR MaLR 1 364 0 486 0 0 0 chr6 157133578 157133632 -32145922 + (TG)n Simple_repeat Simple_repeat 1 54 0 367 160 200 20 chr6 157133811 157133911 -32145643 - L2 LINE L2 -5 3308 3191 4516 151 34 7 chr6 157134047 157134911 -32144643 - L1MA7 LINE L1 -2 6289 5403 2343 109 0 0 chr6 157135586 157135888 -32143666 + AluSc SINE Alu 1 302 -7 25 0 0 0 chr6 157136029 157136054 -32143500 + AT_rich Low_complexity Low_complexity 1 25 0 368 241 84 118 chr6 157136402 157136490 -32143064 - MIR SINE MIR -16 246 156 1570 156 60 4 chr6 157136490 157136759 -32142795 - AluJb SINE Alu -28 284 1 368 241 84 118 chr6 157136759 157136873 -32142681 - MIR SINE MIR -106 156 51 333 302 43 0 chr6 157137042 157137158 -32142396 + MIR SINE MIR 120 240 -22 186 43 0 0 chr6 157138779 157138802 -32140752 + (CA)n Simple_repeat Simple_repeat 1 23 0 293 290 8 16 chr6 157138864 157138988 -32140566 - LTR67 LTR ERVL 0 557 435 28 29 0 0 chr6 157139411 157139446 -32140108 + AT_rich Low_complexity Low_complexity 1 35 0 313 302 192 10 chr6 157139615 157139778 -32139776 + MIR SINE MIR 39 233 -29 214 351 90 27 chr6 157140295 157140406 -32139148 - L2 LINE L2 -12 3260 3143 1587 183 20 20 chr6 157140446 157140801 -32138753 - MLT1A1 LTR MaLR 0 365 11 2575 98 0 35 chr6 157141283 157141660 -32137894 - THE1B LTR MaLR 0 364 1 438 20 0 0 chr6 157143882 157143933 -32135621 + (CA)n Simple_repeat Simple_repeat 1 51 0 1840 124 7 4 chr6 157144008 157144281 -32135273 + AluSg SINE Alu 37 310 0 414 164 127 0 chr6 157144625 157144735 -32134819 - L1M4 LINE L1 -3629 3015 2892 8929 59 0 0 chr6 157144766 157146833 -32132721 + L1PA6 LINE L1 4087 6154 0 1064 294 74 35 chr6 157146829 157148486 -32131068 - L1M4 LINE L1 -3767 2877 1025 * 26 30 0 0 chr6 157150025 157150058 -32129496 + AT_rich Low_complexity Low_complexity 1 33 0 21 71 0 0 chr6 157151046 157151088 -32128466 + AT_rich Low_complexity Low_complexity 1 42 0 2050 114 42 0 chr6 157151867 157152156 -32127398 - AluSq SINE Alu -12 301 1 1674 166 59 3 chr6 157152184 157152540 -32127014 + L1MB3 LINE L1 5807 6182 -1 261 253 51 0 chr6 157152565 157152644 -32126910 + MER69 DNA AcHobo 1451 1533 -993 1747 124 41 24 chr6 157152773 157152817 -32126737 - AluSq SINE Alu -18 295 253 198 0 0 0 chr6 157152817 157152839 -32126715 + (CAGTG)n Simple_repeat Simple_repeat 1 22 0 1747 124 41 24 chr6 157152839 157153084 -32126470 - AluSq SINE Alu -60 253 1 988 194 0 0 chr6 157153246 157153411 -32126143 - FRAM SINE Alu -1 165 1 21 0 0 0 chr6 157153704 157153725 -32125829 + AT_rich Low_complexity Low_complexity 1 21 0 1820 169 3 0 chr6 157153732 157154022 -32125532 - AluSx SINE Alu -21 291 1 266 325 82 15 chr6 157155374 157155715 -32123839 + HAL1 LINE L1 155 518 -1989 2112 129 3 0 chr6 157155858 157156152 -32123402 - AluSx SINE Alu -17 295 1 308 288 96 8 chr6 157156540 157156665 -32122889 + L2 LINE L2 877 1012 -2302 1714 162 52 30 chr6 157156671 157157036 -32122518 - THE1C LTR MaLR 0 375 3 1792 126 78 37 chr6 157157426 157157800 -32121754 - L1MA7 LINE L1 -3 6288 5900 434 127 0 0 chr6 157157816 157157887 -32121667 + L1MA7 LINE L1 5824 5894 -397 1419 305 133 32 chr6 157157887 157158619 -32120935 + L2 LINE L2 1827 2644 -670 1456 205 49 68 chr6 157158619 157159092 -32120462 - MLT2C2 LTR ERVL 0 464 1 1419 305 133 32 chr6 157159092 157159142 -32120412 + L2 LINE L2 2644 2688 -626 436 187 0 0 chr6 157159174 157159249 -32120305 + AluJ/FLAM SINE Alu 1 75 -237 1188 268 127 20 chr6 157159477 157159862 -32119692 + L2 LINE L2 2329 2770 -544 1022 213 69 103 chr6 157159862 157160443 -32119111 - MER34B LTR ERV1 0 565 5 1188 268 127 20 chr6 157160443 157160505 -32119049 + L2 LINE L2 2770 2824 -490 21 36 0 0 chr6 157160947 157160975 -32118579 + AT_rich Low_complexity Low_complexity 1 28 0 662 194 0 0 chr6 157161091 157161225 -32118329 + MLT2D LTR ERVL 3 136 -278 287 77 0 0 chr6 157161225 157161264 -32118290 - L1M2 LINE L1 -428 5863 5825 523 308 138 29 chr6 157161285 157161597 -32117957 + L3 LINE CR1 960 1305 -272 228 228 51 38 chr6 157161672 157161751 -32117803 + L3 LINE CR1 1450 1529 -48 324 335 67 39 chr6 157161870 157162049 -32117505 - MIR SINE MIR -70 192 9 525 221 15 0 chr6 157162298 157162429 -32117125 + MLT2D LTR ERVL 1 133 -281 603 162 34 0 chr6 157162429 157162546 -32117008 - L1MA7 LINE L1 -425 5866 5746 1869 113 102 27 chr6 157162546 157162914 -32116640 + L1MA7 LINE L1 5892 6290 -1 949 223 81 25 chr6 157162948 157163231 -32116323 + MLT2D LTR ERVL 113 411 -3 1792 126 49 25 chr6 157163248 157163534 -32116020 - AluSx SINE Alu -18 294 2 465 244 118 15 chr6 157163612 157163747 -32115807 + MLT1E LTR MaLR 376 524 -69 342 300 83 116 chr6 157164737 157165220 -32114334 + L1M2 LINE L1 472 938 -5911 241 358 234 7 chr6 157167623 157167930 -32111624 + L3 LINE CR1 817 1193 -384 369 364 23 6 chr6 157168065 157168241 -32111313 + L3 LINE CR1 1171 1349 -228 306 0 0 0 chr6 157168397 157168431 -32111123 + (TG)n Simple_repeat Simple_repeat 2 35 0 914 191 18 36 chr6 157169009 157169229 -32110325 + AluSg SINE Alu 37 252 -58 423 313 113 5 chr6 157170868 157171063 -32108491 + L1ME4a LINE L1 5685 5900 -221 240 35 0 0 chr6 157171187 157171216 -32108338 + (CA)n Simple_repeat Simple_repeat 1 29 0 538 224 31 25 chr6 157171225 157171386 -32108168 + L1ME LINE L1 5616 5777 -387 432 179 0 24 chr6 157172152 157172222 -32107332 + Tigger3(Golem) DNA MER2_type 1 70 -532 1919 150 64 0 chr6 157172222 157172548 -32107006 - MER7A DNA MER2_type -1 345 1 432 179 0 24 chr6 157172548 157172561 -32106993 + Tigger3(Golem) DNA MER2_type 70 82 -520 324 38 0 57 chr6 157172559 157172612 -32106942 + Tigger3(Golem) DNA MER2_type 2721 2770 -259 * 608 194 139 24 chr6 157177666 157177831 -32101723 - MER5A DNA MER1_type 0 189 6 281 215 123 0 chr6 157178837 157178902 -32100652 + L3 LINE CR1 1504 1576 -1 235 280 89 89 chr6 157178985 157179153 -32100401 - L3 LINE CR1 -9 1568 1401 292 243 37 44 chr6 157179163 157179299 -32100255 - L1ME4a LINE L1 -3 6118 5984 204 179 0 0 chr6 157179307 157179346 -32100208 + (TG)n Simple_repeat Simple_repeat 1 39 0 637 302 10 20 chr6 157179469 157179671 -32099883 - L3 LINE CR1 -160 1417 1218 576 151 47 0 chr6 157179694 157179815 -32099739 - L1MA10 LINE L1 -28 6285 6008 26 52 0 17 chr6 157179844 157179858 -32099696 + AT_rich Low_complexity Low_complexity 1 14 -43 2543 103 11 11 chr6 157179858 157180235 -32099319 + L1PA10 LINE L1 5781 6157 -11 26 52 0 17 chr6 157180235 157180278 -32099276 + AT_rich Low_complexity Low_complexity 14 57 0 2184 96 3 3 chr6 157180314 157180607 -32098947 - AluSx SINE Alu -17 295 3 4503 153 19 21 chr6 157180607 157181699 -32097855 - L1MB1 LINE L1 -56 6133 5045 1742 209 6 0 chr6 157181709 157182072 -32097482 + L1MB1 LINE L1 4662 5026 -1120 200 303 30 0 chr6 157182117 157182183 -32097371 - L3 LINE CR1 -405 1172 1105 401 335 165 31 chr6 157182457 157182681 -32096873 - L2 LINE L2 -27 3245 2992 461 292 169 0 chr6 157182686 157182881 -32096673 - L3 LINE CR1 -782 795 568 21 0 0 0 chr6 157184003 157184024 -32095530 + AT_rich Low_complexity Low_complexity 1 21 0 2379 131 19 6 chr6 157184875 157185234 -32094320 + THE1B LTR MaLR 1 364 0 202 257 222 28 chr6 157187330 157187474 -32092080 - MIR3 SINE MIR -5 203 32 330 87 0 0 chr6 157187626 157187672 -32091882 + (TA)n Simple_repeat Simple_repeat 1 46 0 * 528 30 0 0 chr6 157187671 157187737 -32091817 + (GA)n Simple_repeat Simple_repeat 2 67 0 1267 163 8 42 chr6 157187737 157187977 -32091577 - AluJb SINE Alu -37 275 44 382 274 82 7 chr6 157189174 157189320 -32090234 + L2 LINE L2 2896 3052 -220 2234 101 0 7 chr6 157189353 157189651 -32089903 - AluSg SINE Alu -14 296 1 814 143 0 8 chr6 157190404 157190530 -32089024 + FLAM_C SINE Alu 1 125 -18 5381 96 1 1 chr6 157190536 157191318 -32088236 + L1PA12 LINE L1 5387 6168 0 369 321 65 15 chr6 157191321 157191530 -32088024 - L1MCa LINE L1 -4696 1950 1718 2575 188 32 4 chr6 157191530 157192090 -32087464 - L1MB4 LINE L1 -91 6089 5514 264 241 25 25 chr6 157192093 157192172 -32087382 - L1MCa LINE L1 -5640 902 824 283 284 19 13 chr6 157192187 157192342 -32087212 - L1MCa LINE L1 -6382 160 5 301 269 61 61 chr6 157192356 157192568 -32086986 - L1MDa LINE L1 -4819 1721 1510 327 85 0 0 chr6 157192598 157192645 -32086909 - MLT2D LTR ERVL -2 412 366 438 251 183 17 chr6 157195398 157195573 -32083981 + MIR SINE MIR 59 262 0 2007 198 55 22 chr6 157196401 157196856 -32082698 - MLT1D LTR MaLR 0 505 36 27 0 0 0 chr6 157197926 157197953 -32081601 + AT_rich Low_complexity Low_complexity 1 27 0 350 175 0 0 chr6 157197953 157198010 -32081544 - AluJb SINE Alu -245 57 1 715 114 9 0 chr6 157198183 157198288 -32081266 + L1MA9 LINE L1 6207 6312 0 596 333 78 0 chr6 157198406 157198637 -32080917 + MIR SINE MIR 6 254 -8 252 301 27 0 chr6 157199097 157199170 -32080384 + MIR3 SINE MIR 128 202 -6 236 254 183 24 chr6 157200078 157200204 -32079350 + L2 LINE L2 3168 3313 0 566 246 8 8 chr6 157200587 157200721 -32078833 + MER94 DNA DNA 1 134 0 1159 208 78 25 chr6 157200855 157201215 -32078339 - MER74B LTR ERVL -21 601 223 237 286 76 19 chr6 157201894 157201999 -32077555 - MIR SINE MIR -62 146 36 195 391 33 46 chr6 157205853 157206004 -32073550 - MIR3 SINE MIR -39 169 21 452 244 0 0 chr6 157206506 157206588 -32072966 + FRAM/FAM SINE Alu 4 85 -91 1705 128 35 17 chr6 157206695 157206985 -32072569 - AluJb SINE Alu -17 295 1 33 25 0 0 chr6 157207123 157207163 -32072391 + AT_rich Low_complexity Low_complexity 1 40 0 231 254 79 0 chr6 157207347 157207447 -32072107 - MIR SINE MIR -37 225 66 774 263 47 0 chr6 157207464 157207654 -32071900 + MER3 DNA MER1_type 1 199 -10 251 284 68 11 chr6 157207719 157207807 -32071747 - L2 LINE L2 0 3313 3221 860 193 6 6 chr6 157208663 157208824 -32070730 - MER105 DNA DNA -43 161 1 21 36 0 0 chr6 157209026 157209054 -32070500 + AT_rich Low_complexity Low_complexity 1 28 0 309 281 128 55 chr6 157209474 157209638 -32069916 - MIR SINE MIR -58 204 29 1079 220 76 13 chr6 157210251 157210555 -32068999 + MER33 DNA MER1_type 2 324 0 1218 219 30 39 chr6 157211253 157211614 -32067940 - MER20B DNA MER1_type -106 677 320 511 47 0 0 chr6 157211614 157211678 -32067876 + L1PA3 LINE L1 6089 6152 -3 34 42 0 0 chr6 157211678 157211726 -32067828 + AT_rich Low_complexity Low_complexity 1 48 0 396 237 167 82 chr6 157212375 157212632 -32066922 - MER20B DNA MER1_type -504 279 1 2444 121 52 3 chr6 157214556 157214903 -32064651 - THE1B LTR MaLR 0 364 1 344 247 0 54 chr6 157215274 157215367 -32064187 + MIR SINE MIR 8 95 -167 307 273 141 8 chr6 157215369 157215497 -32064057 - MLT1J2 LTR MaLR -6 444 300 284 86 0 155 chr6 157215592 157215650 -32063904 + Alu SINE Alu 245 293 -9 * 439 189 0 33 chr6 157215645 157215735 -32063819 + MER58 DNA MER1_type 2325 2411 -9 705 267 141 15 chr6 157215742 157216012 -32063542 - MLT1J2 LTR MaLR -141 309 6 489 250 118 7 chr6 157216016 157216168 -32063386 + MIR SINE MIR 94 262 0 268 307 200 30 chr6 157216199 157216310 -32063244 + L2 LINE L2 2461 2552 -720 2880 196 39 15 chr6 157216310 157216852 -32062702 - MER74A LTR ERVL -3 555 1 268 307 200 30 chr6 157216852 157217230 -32062324 + L2 LINE L2 2552 3025 -247 351 349 73 9 chr6 157217282 157217500 -32062054 + MIR SINE MIR 3 234 -28 225 256 0 0 chr6 157217545 157217588 -32061966 - MER117 DNA MER1_type -105 92 50 23 0 0 0 chr6 157217779 157217802 -32061752 + AT_rich Low_complexity Low_complexity 1 23 0 2355 138 22 14 chr6 157217822 157218183 -32061371 + THE1B LTR MaLR 1 364 0 754 229 68 5 chr6 157218378 157218570 -32060984 + L1ME1 LINE L1 5963 6166 0 1566 173 43 17 chr6 157218577 157218877 -32060677 + AluJb SINE Alu 2 309 -3 1836 116 26 68 chr6 157219994 157220305 -32059249 - AluSq SINE Alu -15 298 1 607 301 186 32 chr6 157220488 157220732 -32058822 - L2 LINE L2 0 3313 3108 2263 118 175 6 chr6 157220732 157221098 -32058456 + MSTA LTR MaLR 1 428 0 607 301 186 32 chr6 157221098 157221288 -32058266 - L2 LINE L2 -205 3108 2812 3468 247 82 47 chr6 157221388 157221639 -32057915 - L1MD3 LINE L1 0 8041 7800 1512 216 52 111 chr6 157221639 157222191 -32057363 + MLT2B1 LTR ERVL 1 520 0 3468 247 82 47 chr6 157222191 157222875 -32056679 - L1MD3 LINE L1 -241 7800 7142 1688 191 3 13 chr6 157222875 157223179 -32056375 - AluJo SINE Alu -11 301 1 318 50 0 0 chr6 157223181 157223221 -32056333 + (TTA)n Simple_repeat Simple_repeat 1 40 0 2066 117 3 3 chr6 157223221 157223503 -32056051 - AluSx SINE Alu -30 282 1 3468 247 82 47 chr6 157223503 157224019 -32055535 - L1MD3 LINE L1 -898 7143 6545 589 300 88 15 chr6 157224035 157224295 -32055259 - L2 LINE L2 -606 2708 2430 1718 171 43 89 chr6 157226642 157226860 -32052694 - MLT1A2 LTR MaLR 0 374 180 1766 183 0 16 chr6 157226860 157227171 -32052383 - AluJb SINE Alu -6 306 1 1718 171 43 89 chr6 157227171 157227344 -32052210 - MLT1A2 LTR MaLR -194 180 1 216 97 0 0 chr6 157228750 157228781 -32050773 + L2 LINE L2 3274 3304 -9 192 329 71 0 chr6 157229338 157229408 -32050146 + MIR3 SINE MIR 86 160 -48 1707 154 3 28 chr6 157229914 157230223 -32049331 + AluJo SINE Alu 7 308 0 1611 194 0 3 chr6 157230226 157230515 -32049039 + AluJo SINE Alu 1 288 -24 571 307 30 5 chr6 157230536 157230747 -32048807 - MIR SINE MIR -29 233 15 577 300 8 57 chr6 157230884 157230972 -32048582 + MIR SINE MIR 13 104 -158 2209 120 0 3 chr6 157230972 157231272 -32048282 - AluSq SINE Alu -14 299 1 577 300 8 57 chr6 157231272 157231446 -32048108 + MIR SINE MIR 104 262 0 2255 111 0 3 chr6 157232236 157232542 -32047012 + AluSq SINE Alu 1 305 -8 372 70 53 0 chr6 157232663 157232751 -32046803 + L1PA4 LINE L1 6088 6178 0 197 241 93 0 chr6 157232950 157233004 -32046550 + L2 LINE L2 3179 3237 -76 294 302 9 19 chr6 157233707 157233813 -32045741 + L2 LINE L2 2244 2348 -966 1596 255 102 75 chr6 157233813 157234792 -32044762 + L1MC4a LINE L1 5866 6871 -937 * 5215 255 34 63 chr6 157234775 157236499 -32043055 + L1MEc LINE L1 22 1673 -4723 1623 149 78 0 chr6 157236499 157236768 -32042786 + AluJb SINE Alu 1 290 -22 5215 255 34 63 chr6 157236768 157237174 -32042380 + L1MEc LINE L1 1673 2089 -4307 1358 238 36 88 chr6 157237334 157237399 -32042155 + L1MC4 LINE L1 7117 7184 -858 2450 90 0 0 chr6 157237399 157237699 -32041855 + AluSg SINE Alu 1 300 -10 1358 238 36 88 chr6 157237699 157238212 -32041342 + L1MC4 LINE L1 7184 7665 -377 2445 144 37 0 chr6 157238237 157238641 -32040913 - MSTB1 LTR MaLR -13 419 1 219 213 21 0 chr6 157238646 157238693 -32040861 - MIR SINE MIR -156 106 59 187 325 13 39 chr6 157240306 157240383 -32039171 - MIR SINE MIR -101 107 33 207 0 0 0 chr6 157240493 157240516 -32039038 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1687 134 48 20 chr6 157240914 157241206 -32038348 + AluJo SINE Alu 5 304 -8 635 286 41 6 chr6 157241748 157241919 -32037635 - MER5B DNA MER1_type 0 178 2 490 286 82 0 chr6 157242506 157242653 -32036901 + MIR3 SINE MIR 9 167 -41 2246 101 0 19 chr6 157243796 157244104 -32035450 - AluSg SINE Alu -8 302 1 816 143 0 8 chr6 157244857 157244983 -32034571 + FLAM_C SINE Alu 1 125 -18 5788 96 1 1 chr6 157244989 157245771 -32033783 + L1PA12 LINE L1 5387 6168 0 239 321 65 16 chr6 157245774 157245958 -32033596 - L1MCa LINE L1 -4734 1910 1718 2829 188 32 4 chr6 157245983 157246543 -32033011 - L1MB4 LINE L1 -91 6089 5514 297 241 25 25 chr6 157246546 157246625 -32032929 - L1MCa LINE L1 -5640 902 824 346 287 19 13 chr6 157246640 157246797 -32032757 - L1MCa LINE L1 -6382 160 3 373 269 61 61 chr6 157246809 157247021 -32032533 - L1MDa LINE L1 -4819 1721 1510 352 108 0 0 chr6 157247051 157247105 -32032449 - MLT2D LTR ERVL -2 412 366 438 251 183 17 chr6 157249851 157250026 -32029528 + MIR SINE MIR 59 262 0 1812 198 55 22 chr6 157250854 157251309 -32028245 - MLT1D LTR MaLR 0 505 36 29 0 0 0 chr6 157252379 157252408 -32027146 + AT_rich Low_complexity Low_complexity 1 29 0 319 148 0 0 chr6 157252408 157252462 -32027092 - Alu SINE Alu -248 54 1 655 114 9 0 chr6 157252635 157252740 -32026814 + L1MA9 LINE L1 6207 6312 0 612 333 78 0 chr6 157252858 157253089 -32026465 + MIR SINE MIR 6 254 -8 257 301 27 0 chr6 157253549 157253622 -32025932 + MIR3 SINE MIR 128 202 -6 244 254 183 24 chr6 157254530 157254656 -32024898 + L2 LINE L2 3168 3313 0 508 246 8 8 chr6 157255039 157255173 -32024381 + MER94 DNA DNA 1 134 0 1052 212 65 18 chr6 157255342 157255682 -32023872 - MER74B LTR ERVL -59 563 208 241 294 67 25 chr6 157256343 157256462 -32023092 - MIR SINE MIR -62 146 23 608 194 139 24 chr6 157262027 157262192 -32017362 - MER5A DNA MER1_type 0 189 6 281 215 123 0 chr6 157263198 157263263 -32016291 + L3 LINE CR1 1504 1576 -1 22 35 0 0 chr6 157263312 157263341 -32016213 + AT_rich Low_complexity Low_complexity 1 29 0 257 274 89 89 chr6 157263346 157263514 -32016040 - L3 LINE CR1 -9 1568 1401 269 250 37 44 chr6 157263524 157263660 -32015894 - L1ME4a LINE L1 -3 6118 5984 222 171 0 0 chr6 157263668 157263709 -32015845 + (TG)n Simple_repeat Simple_repeat 1 41 0 625 307 10 20 chr6 157263832 157264034 -32015520 - L3 LINE CR1 -160 1417 1218 576 151 47 0 chr6 157264057 157264178 -32015376 - L1MA10 LINE L1 -28 6285 6008 26 52 0 17 chr6 157264207 157264221 -32015333 + AT_rich Low_complexity Low_complexity 1 14 -43 2538 103 11 11 chr6 157264221 157264598 -32014956 + L1PA10 LINE L1 5781 6157 -11 26 52 0 17 chr6 157264598 157264641 -32014913 + AT_rich Low_complexity Low_complexity 14 57 0 2184 96 3 3 chr6 157264677 157264970 -32014584 - AluSx SINE Alu -17 295 3 4503 153 19 21 chr6 157264970 157266062 -32013492 - L1MB1 LINE L1 -56 6133 5045 1742 209 6 0 chr6 157266072 157266435 -32013119 + L1MB1 LINE L1 4662 5026 -1120 200 303 30 0 chr6 157266480 157266546 -32013008 - L3 LINE CR1 -405 1172 1105 419 330 165 31 chr6 157266820 157267044 -32012510 - L2 LINE L2 -27 3245 2992 493 296 163 0 chr6 157267049 157267245 -32012309 - L3 LINE CR1 -782 795 568 21 0 0 0 chr6 157268367 157268388 -32011166 + AT_rich Low_complexity Low_complexity 1 21 0 2379 131 19 6 chr6 157269239 157269598 -32009956 + THE1B LTR MaLR 1 364 0 1841 174 0 10 chr6 157270860 157271158 -32008396 - AluJo SINE Alu -17 295 1 183 200 183 33 chr6 157271853 157271913 -32007641 - MIR3 SINE MIR -25 183 115 181 354 42 10 chr6 157272529 157272625 -32006929 - L2 LINE L2 -840 2474 2376 343 287 58 0 chr6 157273489 157273576 -32005978 - L2 LINE L2 -23 3249 3158 227 350 65 35 chr6 157274137 157274337 -32005217 + L2 LINE L2 2570 2775 -539 443 344 5 36 chr6 157274401 157274593 -32004961 - MIR SINE MIR -57 205 20 228 86 0 0 chr6 157275493 157275528 -32004026 + (CA)n Simple_repeat Simple_repeat 2 36 0 1598 196 18 0 chr6 157276429 157276598 -32002956 - AluJb SINE Alu -21 291 113 255 31 0 0 chr6 157276598 157276630 -32002924 + (TG)n Simple_repeat Simple_repeat 1 32 0 1598 196 18 0 chr6 157276630 157276746 -32002808 - AluJb SINE Alu -199 113 1 252 252 54 72 chr6 157277122 157277233 -32002321 + MIR3 SINE MIR 2 110 -98 * 1667 309 107 29 chr6 157277229 157278575 -32000979 + L2 LINE L2 1768 3303 -10 229 225 70 14 chr6 157278579 157278650 -32000904 + MIR3 SINE MIR 105 179 -29 193 409 72 0 chr6 157278638 157278819 -32000735 + L2 LINE L2 2812 3005 -267 * 22 0 0 0 chr6 157281923 157281945 -31997609 + AT_rich Low_complexity Low_complexity 1 22 0 492 316 52 10 chr6 157282646 157282839 -31996715 + MIR SINE MIR 12 212 -50 256 263 119 47 chr6 157283048 157283233 -31996321 - MIR SINE MIR -3 259 41 21 36 0 0 chr6 157284039 157284067 -31995487 + AT_rich Low_complexity Low_complexity 1 28 0 1458 136 0 9 chr6 157284262 157284483 -31995071 - MER20 DNA MER1_type 0 219 1 873 265 56 4 chr6 157287131 157287365 -31992189 - MIR SINE MIR -2 260 15 602 253 55 33 chr6 157287380 157287562 -31991992 - MIR SINE MIR -66 196 11 209 128 26 0 chr6 157288380 157288419 -31991135 + A-rich Low_complexity Low_complexity 2 41 0 21 0 0 0 chr6 157288971 157288992 -31990562 + AT_rich Low_complexity Low_complexity 1 21 0 262 115 102 6 chr6 157290365 157290522 -31989032 + (TA)n Simple_repeat Simple_repeat 1 172 0 239 156 31 16 chr6 157290532 157290596 -31988958 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 386 125 71 6 chr6 157290599 157290767 -31988787 + (TA)n Simple_repeat Simple_repeat 2 180 0 273 233 40 23 chr6 157290770 157290946 -31988608 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 285 228 0 53 chr6 157290969 157291158 -31988396 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 2723 131 106 10 chr6 157292666 157293147 -31986407 + MER1A DNA MER1_type 1 527 0 22 0 0 0 chr6 157293174 157293196 -31986358 + AT_rich Low_complexity Low_complexity 1 22 0 2280 131 0 0 chr6 157293594 157293935 -31985619 - AluSq SINE Alu 0 341 1 1708 127 28 0 chr6 157293996 157294248 -31985306 - AluJo SINE Alu 0 312 54 256 175 48 95 chr6 157294418 157294481 -31985073 - L2 LINE L2 0 3272 3213 2268 97 0 35 chr6 157294593 157294912 -31984642 + AluSq SINE Alu 1 308 -5 427 270 79 16 chr6 157294969 157295095 -31984459 - L2 LINE L2 0 3313 3180 230 351 20 46 chr6 157298436 157298587 -31980967 - MIR3 SINE MIR -20 188 42 934 207 5 36 chr6 157299111 157299333 -31980221 - MER20 DNA MER1_type -2 217 3 23 54 0 0 chr6 157301233 157301270 -31978284 + AT_rich Low_complexity Low_complexity 1 37 0 333 250 164 0 chr6 157301860 157301976 -31977578 + MIR SINE MIR 65 199 -63 353 360 147 24 chr6 157303374 157303668 -31975886 + L2 LINE L2 1858 2115 -1199 2125 136 0 13 chr6 157303668 157303984 -31975570 + AluJb SINE Alu 1 312 0 353 360 147 24 chr6 157303984 157304180 -31975374 + L2 LINE L2 2115 2408 -906 223 318 16 0 chr6 157304344 157304407 -31975147 + L2 LINE L2 3201 3264 -8 1714 171 17 27 chr6 157304751 157305049 -31974505 - AluJb SINE Alu -17 295 1 216 97 0 0 chr6 157308065 157308096 -31971458 + (GA)n Simple_repeat Simple_repeat 2 32 0 253 212 372 15 chr6 157310262 157310399 -31969155 + MER5A DNA MER1_type 4 189 0 21 0 0 0 chr6 157311209 157311230 -31968324 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 157312347 157312377 -31967177 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 157312469 157312490 -31967064 + AT_rich Low_complexity Low_complexity 1 21 0 347 325 37 37 chr6 157312586 157312749 -31966805 + L1ME4a LINE L1 5497 5659 -462 333 289 94 44 chr6 157312768 157312948 -31966606 + L1ME4a LINE L1 5726 5914 -207 282 149 9 84 chr6 157313089 157313196 -31966358 + A-rich Low_complexity Low_complexity 2 100 0 261 268 84 0 chr6 157313598 157313669 -31965885 + MIR3 SINE MIR 78 154 -54 25 0 0 0 chr6 157315816 157315841 -31963713 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr6 157318658 157318687 -31960867 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr6 157318811 157318840 -31960714 + AT_rich Low_complexity Low_complexity 1 29 0 272 299 89 64 chr6 157320164 157320384 -31959170 - MIR SINE MIR -6 256 34 185 183 133 17 chr6 157320464 157320524 -31959030 + L3 LINE CR1 626 692 -885 2276 113 3 3 chr6 157321266 157321577 -31957977 - AluSq SINE Alu -2 311 1 217 325 43 51 chr6 157323788 157323905 -31955649 - L2 LINE L2 -1 3312 3197 295 375 68 39 chr6 157324192 157324605 -31954949 - L2 LINE L2 -430 2884 2460 312 306 135 0 chr6 157324635 157324746 -31954808 - L2 LINE L2 -10 3262 3137 2080 112 25 0 chr6 157324757 157325042 -31954512 + AluSg SINE Alu 1 292 -18 201 288 83 30 chr6 157325359 157325491 -31954063 - L2 LINE L2 -1324 1990 1852 201 74 0 0 chr6 157326492 157326519 -31953035 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 206 258 90 45 chr6 157326524 157326613 -31952941 - L2 LINE L2 -2 3270 3178 200 132 0 105 chr6 157327483 157327559 -31951995 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 211 387 27 18 chr6 157328020 157328131 -31951423 + MIR3 SINE MIR 3 114 -94 245 29 0 29 chr6 157328164 157328199 -31951355 + (TG)n Simple_repeat Simple_repeat 2 35 0 254 93 0 47 chr6 157328971 157329014 -31950540 - Zaphod DNA AcHobo -16 4015 3975 4291 208 78 22 chr6 157329025 157330278 -31949276 - Zaphod DNA AcHobo -2691 1340 18 1660 178 105 16 chr6 157330839 157331288 -31948266 + Charlie4a DNA MER1_type 3 491 -17 665 253 7 13 chr6 157331941 157332095 -31947459 - MIR SINE MIR -105 157 5 260 27 27 0 chr6 157333164 157333201 -31946353 + (GA)n Simple_repeat Simple_repeat 2 39 0 1148 104 49 44 chr6 157334224 157334407 -31945147 - FRAM SINE Alu 0 176 1 464 144 0 11 chr6 157334407 157334497 -31945057 + (TCCC)n Simple_repeat Simple_repeat 4 92 0 618 205 0 0 chr6 157334517 157334629 -31944925 - FLAM_C SINE Alu -29 114 3 956 66 13 20 chr6 157334668 157334820 -31944734 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1764 154 29 0 chr6 157334820 157335092 -31944462 - AluSx SINE Alu -32 280 1 227 273 13 13 chr6 157335295 157335372 -31944182 + MIR SINE MIR 77 153 -109 2082 114 43 3 chr6 157335452 157335751 -31943803 - AluSx SINE Alu -1 311 1 234 0 0 0 chr6 157336587 157336613 -31942941 + (CA)n Simple_repeat Simple_repeat 2 27 0 302 265 0 0 chr6 157337741 157337809 -31941745 + MIR SINE MIR 180 247 -15 885 326 115 43 chr6 157337891 157338239 -31941315 + L2 LINE L2 1773 2095 -1219 1757 169 90 19 chr6 157338239 157338606 -31940948 + MSTD LTR MaLR 1 393 -3 885 326 115 43 chr6 157338606 157339176 -31940378 + L2 LINE L2 2095 2757 -557 251 359 72 87 chr6 157339214 157339548 -31940006 + L2 LINE L2 2895 3223 -49 1854 151 38 7 chr6 157339621 157339913 -31939641 + AluJb SINE Alu 1 301 -11 30 59 0 0 chr6 157340368 157340419 -31939135 + AT_rich Low_complexity Low_complexity 1 51 0 3338 246 50 19 chr6 157340547 157341632 -31937922 - L1MEc LINE L1 -5226 1170 53 228 86 0 0 chr6 157342251 157342286 -31937268 + (TC)n Simple_repeat Simple_repeat 1 35 0 2218 132 3 0 chr6 157342695 157343006 -31936548 - AluSx SINE Alu 0 312 1 369 306 47 50 chr6 157343268 157343508 -31936046 - MIR SINE MIR -1 261 23 2098 109 3 3 chr6 157343593 157343905 -31935649 + AluSx SINE Alu 1 312 0 224 337 45 11 chr6 157343952 157344041 -31935513 - L2 LINE L2 -12 3301 3210 207 203 0 0 chr6 157344655 157344719 -31934835 + (TCCA)n Simple_repeat Simple_repeat 4 67 0 506 207 6 0 chr6 157344746 157344915 -31934639 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 414 206 0 25 chr6 157344916 157345164 -31934390 + CT-rich Low_complexity Low_complexity 1 241 0 272 366 75 26 chr6 157345209 157345585 -31933969 - L2 LINE L2 -226 3046 2654 483 243 108 56 chr6 157346532 157346746 -31932808 + MIR SINE MIR 19 243 -19 510 14 28 0 chr6 157347075 157347147 -31932407 - MER41A LTR ERV1 -81 473 400 351 287 46 37 chr6 157347542 157347650 -31931904 + L2 LINE L2 3163 3271 -1 285 29 0 0 chr6 157349889 157349923 -31929631 + (TG)n Simple_repeat Simple_repeat 1 34 0 923 240 132 34 chr6 157351046 157351455 -31928099 + MLT1J2 LTR MaLR 2 450 0 313 306 22 52 chr6 157351750 157351884 -31927670 - MIR SINE MIR -56 206 77 858 83 0 41 chr6 157352052 157352173 -31927381 - AluSg/x SINE Alu -9 301 186 180 0 0 0 chr6 157352275 157352295 -31927259 + (T)n Simple_repeat Simple_repeat 1 20 0 496 319 46 17 chr6 157354557 157354798 -31924756 - MIR SINE MIR 0 262 15 543 62 0 0 chr6 157355184 157355282 -31924272 - AluY SINE Alu 0 315 218 1951 143 3 15 chr6 157355578 157355913 -31923641 - MER44D DNA MER2_type 0 609 9 23 0 0 0 chr6 157356217 157356240 -31923314 + AT_rich Low_complexity Low_complexity 1 23 0 3416 137 39 5 chr6 157356319 157356916 -31922638 + Tigger2 DNA MER2_type 134 750 -1968 1365 129 26 49 chr6 157356973 157357237 -31922317 + Tigger2 DNA MER2_type 2460 2717 -1 210 284 168 11 chr6 157357503 157357598 -31921956 - MIR SINE MIR -104 158 49 193 204 163 122 chr6 157357630 157357728 -31921826 + MIR SINE MIR 32 133 -75 219 246 0 0 chr6 157358018 157358079 -31921475 + T-rich Low_complexity Low_complexity 1 61 0 25 0 0 0 chr6 157358283 157358308 -31921246 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr6 157359418 157359441 -31920113 + AT_rich Low_complexity Low_complexity 1 23 0 1251 180 161 8 chr6 157359520 157359781 -31919773 + AluJb SINE Alu 1 301 -1 523 73 12 12 chr6 157359790 157359872 -31919682 + (GAAA)n Simple_repeat Simple_repeat 4 85 0 180 0 0 0 chr6 157360751 157360771 -31918783 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 2588 57 14 0 chr6 157360771 157361120 -31918434 - L1PA8 LINE L1 -24 6148 5795 339 348 14 28 chr6 157363809 157363950 -31915604 + MIR3 SINE MIR 31 169 -39 201 296 66 117 chr6 157364578 157364726 -31914828 + L2 LINE L2 3017 3171 -101 245 29 0 29 chr6 157364726 157364761 -31914793 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2156 122 0 0 chr6 157364768 157365056 -31914498 - AluSx SINE Alu -24 288 1 201 296 66 117 chr6 157365056 157365156 -31914398 + L2 LINE L2 3177 3260 -12 1022 24 0 0 chr6 157365170 157365293 -31914261 - L1PA4 LINE L1 -4 6151 6029 183 80 0 0 chr6 157365781 157365806 -31913748 + (TG)n Simple_repeat Simple_repeat 2 26 0 1488 175 105 0 chr6 157366216 157366496 -31913058 - AluJo SINE Alu 0 307 1 366 80 0 0 chr6 157368127 157368177 -31911377 + (T)n Simple_repeat Simple_repeat 1 50 0 2403 55 0 7 chr6 157368298 157368589 -31910965 + AluY SINE Alu 1 289 -22 2337 66 56 0 chr6 157370135 157370423 -31909131 - AluSc SINE Alu -5 304 1 23 54 0 0 chr6 157370431 157370468 -31909086 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr6 157370587 157370609 -31908945 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 157371371 157371399 -31908155 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 157373435 157373456 -31906098 + AT_rich Low_complexity Low_complexity 1 21 0 2021 153 7 0 chr6 157373841 157374149 -31905405 - AluJo SINE Alu -2 310 1 449 197 94 17 chr6 157374268 157374385 -31905169 + FLAM_A SINE Alu 1 126 -7 359 314 45 19 chr6 157374753 157374909 -31904645 + MIR SINE MIR 102 261 -1 1848 82 0 4 chr6 157375808 157376039 -31903515 - AluSp SINE Alu 0 313 84 277 223 56 10 chr6 157376263 157376384 -31903170 - L1MC/D LINE L1 -469 5652 5570 1944 162 0 7 chr6 157376656 157376958 -31902596 + AluJb SINE Alu 3 302 -10 229 177 35 44 chr6 157377511 157377624 -31901930 + (TTATA)n Simple_repeat Simple_repeat 3 114 0 * 233 174 54 33 chr6 157377551 157377644 -31901910 + (TATATG)n Simple_repeat Simple_repeat 1 91 -350 2221 104 0 0 chr6 157377644 157377932 -31901622 - AluSc SINE Alu -21 288 1 233 174 54 33 chr6 157377932 157377983 -31901571 + (TATATG)n Simple_repeat Simple_repeat 91 441 0 236 167 37 0 chr6 157384691 157384745 -31894809 + (TA)n Simple_repeat Simple_repeat 1 56 0 668 192 27 0 chr6 157385537 157385683 -31893871 - L1MD3 LINE L1 -166 7829 7680 27 0 0 0 chr6 157389331 157389358 -31890196 + AT_rich Low_complexity Low_complexity 1 27 0 393 22 0 0 chr6 157390988 157391034 -31888520 + (TG)n Simple_repeat Simple_repeat 1 46 0 208 220 34 0 chr6 157391108 157391167 -31888387 + (TA)n Simple_repeat Simple_repeat 2 62 0 255 140 0 0 chr6 157392908 157392958 -31886596 + (ATG)n Simple_repeat Simple_repeat 3 52 0 2217 124 0 3 chr6 157394161 157394467 -31885087 - AluSx SINE Alu -7 305 1 2232 96 3 0 chr6 157395826 157396108 -31883446 - AluSc SINE Alu -26 283 1 309 293 0 0 chr6 157396434 157396516 -31883038 + (TA)n Simple_repeat Simple_repeat 1 82 0 444 82 0 0 chr6 157396628 157396689 -31882865 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 299 221 29 0 chr6 157396935 157397003 -31882551 + MIR SINE MIR 67 136 -126 290 268 0 0 chr6 157397325 157397396 -31882158 + (TA)n Simple_repeat Simple_repeat 1 71 0 23 33 0 0 chr6 157399155 157399185 -31880369 + AT_rich Low_complexity Low_complexity 1 30 0 381 43 0 0 chr6 157402710 157402757 -31876797 + (TG)n Simple_repeat Simple_repeat 2 48 0 218 81 27 0 chr6 157402804 157402841 -31876713 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 369 58 0 0 chr6 157402885 157402937 -31876617 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1727 148 22 4 chr6 157402939 157403210 -31876344 - AluSx SINE Alu -36 276 1 447 278 45 0 chr6 157403459 157403592 -31875962 - L2 LINE L2 -4 3309 3171 211 391 33 46 chr6 157404518 157404669 -31874885 - MIR3 SINE MIR -39 169 21 424 244 0 0 chr6 157405171 157405253 -31874301 + FRAM/FAM SINE Alu 4 85 -91 1704 128 35 17 chr6 157405360 157405650 -31873904 - AluJb SINE Alu -17 295 1 33 25 0 0 chr6 157405788 157405828 -31873726 + AT_rich Low_complexity Low_complexity 1 40 0 238 254 79 0 chr6 157406012 157406112 -31873442 - MIR SINE MIR -37 225 66 708 258 47 0 chr6 157406129 157406319 -31873235 + MER3 DNA MER1_type 1 199 -10 233 296 68 11 chr6 157406384 157406472 -31873082 - L2 LINE L2 0 3313 3221 786 193 6 6 chr6 157407328 157407489 -31872065 - MER105 DNA DNA -43 161 1 21 36 0 0 chr6 157407691 157407719 -31871835 + AT_rich Low_complexity Low_complexity 1 28 0 323 281 128 55 chr6 157408139 157408303 -31871251 - MIR SINE MIR -58 204 29 911 224 76 13 chr6 157408916 157409220 -31870334 + MER33 DNA MER1_type 2 324 0 1058 219 30 39 chr6 157409918 157410279 -31869275 - MER20B DNA MER1_type -106 677 320 492 31 0 0 chr6 157410279 157410343 -31869211 + L1PA3 LINE L1 6089 6152 -3 40 21 0 0 chr6 157410343 157410390 -31869164 + AT_rich Low_complexity Low_complexity 1 47 0 316 241 167 82 chr6 157411039 157411296 -31868258 - MER20B DNA MER1_type -504 279 1 2290 121 52 3 chr6 157413223 157413570 -31865984 - THE1B LTR MaLR 0 364 1 343 247 0 54 chr6 157413941 157414034 -31865520 + MIR SINE MIR 8 95 -167 227 263 38 0 chr6 157414036 157414116 -31865438 - MLT1J2 LTR MaLR -6 444 362 280 270 54 0 chr6 157414442 157414516 -31865038 + L2 LINE L2 2900 2977 -336 522 219 39 47 chr6 157414597 157414725 -31864829 - L2 LINE L2 -1 3312 3186 321 258 20 66 chr6 157414761 157414912 -31864642 - MIR SINE MIR -35 227 84 469 235 98 30 chr6 157414938 157415070 -31864484 + L2 LINE L2 3172 3312 -1 1221 160 0 47 chr6 157415815 157416027 -31863527 + AluJo SINE Alu 89 290 -22 219 289 31 41 chr6 157416639 157416736 -31862818 - MIR SINE MIR -119 143 48 258 105 0 0 chr6 157417511 157417549 -31862005 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 244 317 21 21 chr6 157418551 157418696 -31860858 + CT-rich Low_complexity Low_complexity 2 146 0 501 276 56 22 chr6 157420129 157420397 -31859157 - MLT1J2 LTR MaLR -173 277 1 364 315 49 28 chr6 157421654 157421797 -31857757 + L2 LINE L2 3168 3313 0 1717 153 36 9 chr6 157421938 157422271 -31857283 - L1MA6 LINE L1 -5 6295 5954 183 288 34 51 chr6 157422288 157422347 -31857207 - L2 LINE L2 -18 3295 3238 809 256 199 6 chr6 157423829 157424141 -31855413 - MLT1J LTR MaLR -138 373 2 494 272 5 65 chr6 157424281 157424465 -31855089 - MIR SINE MIR -2 260 88 2181 146 22 8 chr6 157424470 157424827 -31854727 - THE1B LTR MaLR -2 362 1 198 0 0 0 chr6 157426506 157426528 -31853026 + (TG)n Simple_repeat Simple_repeat 1 22 0 274 253 11 35 chr6 157428653 157428740 -31850814 + L2 LINE L2 3182 3266 -6 2137 109 0 9 chr6 157429373 157429694 -31849860 + THE1B LTR MaLR 1 318 -46 395 69 0 35 chr6 157429723 157429781 -31849773 + THE1B LTR MaLR 301 356 -8 1850 158 134 13 chr6 157429785 157430165 -31849389 + MSTA LTR MaLR 3 428 0 739 179 82 77 chr6 157430165 157430473 -31849081 + LTR37B LTR ERV1 120 432 -36 1996 164 37 3 chr6 157430473 157430826 -31848728 + MLT1A1 LTR MaLR 1 365 0 739 179 82 77 chr6 157430826 157430857 -31848697 + LTR37B LTR ERV1 432 461 -7 265 260 0 0 chr6 157431030 157431107 -31848447 + T-rich Low_complexity Low_complexity 1 77 0 931 259 101 21 chr6 157431824 157432337 -31847217 - L1M4 LINE L1 -1631 4515 3962 1030 272 43 10 chr6 157432345 157432761 -31846793 - L1M4 LINE L1 -2237 3909 3480 748 229 10 20 chr6 157432757 157432958 -31846596 - L1MEc LINE L1 -6160 236 38 * 2003 157 118 18 chr6 157432999 157433388 -31846166 + MSTA LTR MaLR 1 428 0 1694 199 0 28 chr6 157433930 157434251 -31845303 + AluJo SINE Alu 1 312 0 1807 101 13 62 chr6 157434744 157435052 -31844502 + L1MA3 LINE L1 6007 6299 -6 2199 134 37 11 chr6 157435086 157435466 -31844088 + MLT1B LTR MaLR 1 390 0 1160 236 31 111 chr6 157435532 157436358 -31843196 + MER31-int LTR ERV1 3349 4108 -828 805 253 58 64 chr6 157436543 157437009 -31842545 + LTR37B LTR ERV1 4 466 -2 2129 123 58 87 chr6 157437085 157437155 -31842399 + MLT1C LTR MaLR 1 72 -395 2784 142 2 2 chr6 157437155 157437593 -31841961 + L1PA16 LINE L1 5714 6151 -15 2129 123 58 87 chr6 157437593 157438003 -31841551 + MLT1C LTR MaLR 72 467 0 746 269 60 60 chr6 157438443 157438692 -31840862 - MIR SINE MIR 0 262 14 290 366 68 30 chr6 157439994 157440330 -31839224 - L2 LINE L2 -2803 511 163 2464 138 79 71 chr6 157442396 157443026 -31836528 - L1MA6 LINE L1 -7 6293 5659 1606 165 18 7 chr6 157443669 157443954 -31835600 + AluSx SINE Alu 3 290 -22 183 42 0 0 chr6 157444321 157444345 -31835209 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1851 110 0 26 chr6 157444359 157444631 -31834923 - AluSx SINE Alu -44 268 4 23 0 0 0 chr6 157445000 157445023 -31834531 + AT_rich Low_complexity Low_complexity 1 23 0 2059 121 0 3 chr6 157445294 157445617 -31833937 + AluSx SINE Alu 2 323 0 204 254 0 55 chr6 157445627 157445682 -31833872 - MIR3 SINE MIR -39 169 118 3490 62 0 7 chr6 157445881 157446332 -31833222 - LTR7 LTR ERV1 -2 448 1 181 263 0 0 chr6 157446499 157446537 -31833017 - L2 LINE L2 -94 3219 3182 587 281 73 6 chr6 157446808 157446986 -31832568 - MIR SINE MIR -57 205 16 22 35 0 0 chr6 157447329 157447358 -31832196 + AT_rich Low_complexity Low_complexity 1 29 0 237 323 170 0 chr6 157448207 157448417 -31831137 + MIR SINE MIR 17 259 -3 382 274 82 7 chr6 157449912 157450058 -31829496 + L2 LINE L2 2896 3052 -220 2285 97 3 7 chr6 157450091 157450390 -31829164 - AluSx SINE Alu -14 298 1 820 213 14 71 chr6 157451568 157451779 -31827775 + MER90 LTR ERV1 72 270 -344 1449 211 27 45 chr6 157451806 157452142 -31827412 + MLT1E3 LTR MaLR 295 624 0 333 0 0 0 chr6 157452509 157452546 -31827008 + (TG)n Simple_repeat Simple_repeat 1 37 0 7712 133 21 18 chr6 157452606 157453902 -31825652 - HSMAR2 DNA Mariner -1 1301 2 4264 206 70 25 chr6 157454363 157455531 -31824023 + Charlie1 DNA MER1_type 1540 2760 -1 328 278 74 31 chr6 157455557 157455719 -31823835 - L1ME3A LINE L1 -15 6155 5987 510 259 205 0 chr6 157455755 157455940 -31823614 - MIR SINE MIR -11 251 29 728 171 11 22 chr6 157456925 157457106 -31822448 + CT-rich Low_complexity Low_complexity 2 180 0 635 163 10 0 chr6 157457130 157457228 -31822326 - AluJ SINE Alu -44 268 170 1065 136 22 33 chr6 157457245 157457429 -31822125 - AluJ SINE Alu -130 182 1 190 191 24 0 chr6 157458392 157458434 -31821120 + L2 LINE L2 3271 3313 0 883 228 16 28 chr6 157458504 157458754 -31820800 + MLT2D LTR ERVL 1 247 -167 1909 183 6 98 chr6 157458759 157459229 -31820325 + MLT1E3-int LTR MaLR 239 665 -706 299 235 0 0 chr6 157459238 157459306 -31820248 + MLT1E3-int LTR MaLR 820 887 -484 366 250 0 0 chr6 157459365 157459453 -31820101 + MLT-int LTR MaLR 679 766 -969 297 62 83 0 chr6 157459645 157459693 -31819861 - MLT2A1 LTR ERVL 0 444 393 383 106 75 6 chr6 157459693 157459854 -31819700 + (TA)n Simple_repeat Simple_repeat 1 172 0 3111 88 0 0 chr6 157459856 157460256 -31819298 - MLT2A1 LTR ERVL -44 400 1 1896 201 39 18 chr6 157460257 157460645 -31818909 + MLT1A2-int LTR MaLR 1340 1735 0 1496 215 24 29 chr6 157460645 157461021 -31818533 + MLT1A2 LTR MaLR 1 374 0 180 0 0 0 chr6 157461297 157461317 -31818237 + (A)n Simple_repeat Simple_repeat 1 20 0 180 324 148 20 chr6 157461632 157461876 -31817678 + L3b LINE CR1 1113 1387 -196 1482 158 6 84 chr6 157461943 157462266 -31817288 - AluJo SINE Alu -4 308 11 183 317 0 106 chr6 157462637 157462741 -31816813 + L3 LINE CR1 1480 1572 -5 782 256 27 39 chr6 157462776 157463034 -31816520 + MLT2F LTR ERVL 217 471 -192 1070 174 0 5 chr6 157463040 157463362 -31816192 - MLT1A1 LTR MaLR 0 365 1 498 181 208 13 chr6 157463367 157463516 -31816038 + MLT2F LTR ERVL 486 663 0 255 328 49 22 chr6 157464102 157464285 -31815269 - MIR SINE MIR -46 216 29 402 236 99 12 chr6 157464460 157464621 -31814933 - L1MEc LINE L1 -5434 962 788 207 0 0 0 chr6 157464640 157464663 -31814891 + (TC)n Simple_repeat Simple_repeat 2 24 0 186 85 43 21 chr6 157464690 157464737 -31814817 + (TA)n Simple_repeat Simple_repeat 2 49 0 203 232 37 0 chr6 157464744 157464826 -31814728 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 1013 321 59 49 chr6 157464855 157465571 -31813983 - L1MEc LINE L1 -5635 761 39 441 0 0 0 chr6 157466583 157466632 -31812922 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 1601 138 0 16 chr6 157466632 157466878 -31812676 - AluSx SINE Alu -32 280 39 189 0 0 0 chr6 157467977 157467998 -31811556 + (ATG)n Simple_repeat Simple_repeat 3 23 0 273 305 65 39 chr6 157468041 157468195 -31811359 - MIR3 SINE MIR -45 163 6 253 345 0 0 chr6 157468514 157468659 -31810895 + A-rich Low_complexity Low_complexity 1 145 0 261 294 10 20 chr6 157469646 157469748 -31809806 + (TA)n Simple_repeat Simple_repeat 2 102 0 315 250 62 21 chr6 157470392 157470488 -31809066 - MER102b DNA MER1_type 0 341 242 410 244 109 17 chr6 157470758 157470877 -31808677 - L2 LINE L2 -1 3312 3183 292 319 43 0 chr6 157470974 157471068 -31808486 - MIR SINE MIR -59 149 52 3975 178 94 50 chr6 157471068 157471871 -31807683 + MER45B DNA AcHobo 1 858 -723 1811 126 79 7 chr6 157471871 157472148 -31807406 - AluSg SINE Alu -13 297 1 3975 178 94 50 chr6 157472148 157472340 -31807214 + MER45B DNA AcHobo 858 1040 0 2078 174 32 58 chr6 157472957 157473422 -31806132 - MLT1C LTR MaLR 0 467 15 189 308 0 0 chr6 157473815 157473867 -31805687 + L2 LINE L2 3220 3271 -1 303 298 124 19 chr6 157474563 157474724 -31804830 - L2 LINE L2 -995 2319 2142 448 344 58 21 chr6 157474955 157475196 -31804358 - MIR SINE MIR 0 262 13 2560 41 0 0 chr6 157475384 157475679 -31803875 + AluY SINE Alu 1 295 -16 1672 166 26 0 chr6 157476060 157476351 -31803203 - AluJb SINE Alu 0 308 11 297 293 0 0 chr6 157479443 157479525 -31800029 - MER103 DNA DNA -47 119 38 655 225 35 0 chr6 157480450 157480619 -31798935 - L1M4 LINE L1 -1106 5040 4866 1385 197 81 64 chr6 157480622 157481044 -31798510 + MLT1D LTR MaLR 5 433 -72 276 318 39 47 chr6 157482134 157482263 -31797291 - MIR SINE MIR -115 147 20 230 160 413 0 chr6 157482330 157482405 -31797149 + MIR3 SINE MIR 101 206 -2 460 281 33 0 chr6 157483077 157483230 -31796324 - HAL1 LINE L1 -925 1582 1425 939 194 12 81 chr6 157483247 157483567 -31795987 + MLT1B LTR MaLR 4 386 -2 3188 264 69 38 chr6 157483572 157483949 -31795605 - L1MEc LINE L1 -4970 1426 1062 2085 132 0 7 chr6 157483949 157484252 -31795302 + AluSx SINE Alu 1 301 -11 300 111 0 0 chr6 157484252 157484297 -31795257 + (TA)n Simple_repeat Simple_repeat 2 46 0 3188 264 69 38 chr6 157484297 157484357 -31795197 - L1MEc LINE L1 -5334 1062 1005 1174 206 127 26 chr6 157484357 157484697 -31794857 + MLT1A2 LTR MaLR 1 374 0 3188 264 69 38 chr6 157484697 157485606 -31793948 - L1MEc LINE L1 -5391 1005 36 2215 214 15 55 chr6 157485696 157485737 -31793817 - MLT2B2 LTR ERVL -4 511 470 613 87 10 10 chr6 157485737 157485840 -31793714 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 2215 214 15 55 chr6 157485840 157486330 -31793224 - MLT2B2 LTR ERVL -45 470 1 767 221 103 8 chr6 157486676 157486938 -31792616 + MER33 DNA MER1_type 37 323 -1 518 260 73 11 chr6 157487227 157487404 -31792150 + MER5A DNA MER1_type 2 189 0 322 337 97 10 chr6 157487405 157487601 -31791953 + L2 LINE L2 2319 2531 -783 354 278 256 0 chr6 157488103 157488294 -31791260 + L2 LINE L2 2917 3156 -157 2217 122 3 0 chr6 157488643 157488946 -31790608 + AluSq SINE Alu 1 304 -9 637 317 82 26 chr6 157489941 157490244 -31789310 - MER102a DNA MER1_type -10 320 1 205 210 81 32 chr6 157490259 157490383 -31789171 + (TTAAA)n Simple_repeat Simple_repeat 2 131 0 1917 161 0 35 chr6 157490686 157491002 -31788552 + AluJb SINE Alu 1 305 -7 195 250 0 0 chr6 157491574 157491626 -31787928 + (TATG)n Simple_repeat Simple_repeat 2 53 0 5064 109 20 24 chr6 157492182 157492979 -31786575 + L1PA14 LINE L1 5366 6159 -2 419 361 61 44 chr6 157493156 157493452 -31786102 - L2 LINE L2 -2 3270 2970 497 326 165 42 chr6 157493524 157493837 -31785717 - L2 LINE L2 -461 2853 2580 3818 119 35 10 chr6 157493837 157494434 -31785120 - L1PA16 LINE L1 -9 6157 5546 497 326 165 42 chr6 157494434 157495297 -31784257 - L2 LINE L2 -734 2580 1532 317 333 25 25 chr6 157495533 157495653 -31783901 + MIR SINE MIR 20 139 -123 369 0 0 0 chr6 157495660 157495701 -31783853 + (CA)n Simple_repeat Simple_repeat 2 42 0 517 224 7 7 chr6 157495701 157495853 -31783701 + (TA)n Simple_repeat Simple_repeat 1 152 0 1022 188 144 39 chr6 157495853 157495981 -31783573 - AluJo SINE Alu -17 285 172 2222 121 0 0 chr6 157495981 157496279 -31783275 - AluSx SINE Alu -14 298 1 1022 188 144 39 chr6 157496279 157496406 -31783148 - AluJo SINE Alu -130 172 3 1025 211 71 71 chr6 157499082 157499433 -31780121 + MLT1D LTR MaLR 1 351 -154 1850 155 17 3 chr6 157499672 157499962 -31779592 + AluSx SINE Alu 1 294 -18 2217 231 97 23 chr6 157500039 157500904 -31778650 - L1MC4 LINE L1 0 8042 7068 752 246 53 50 chr6 157500878 157501179 -31778375 - L1MC4 LINE L1 -1389 6653 6352 * 2454 245 73 48 chr6 157501190 157502265 -31777289 - L1ME2 LINE L1 -19 6214 5068 2207 119 0 0 chr6 157502265 157502560 -31776994 - AluSx SINE Alu -17 295 1 2454 245 73 48 chr6 157502560 157503380 -31776174 - L1ME2 LINE L1 -1165 5068 4270 4530 174 33 6 chr6 157503445 157505013 -31774541 + L1PA16 LINE L1 4510 6156 -10 367 215 28 0 chr6 157505021 157505128 -31774426 - L1ME2 LINE L1 -1940 4275 4166 * 2281 263 48 51 chr6 157505125 157506645 -31772909 - L1ME2 LINE L1 -2938 3277 1755 1871 115 0 11 chr6 157506645 157506906 -31772648 - AluSc SINE Alu -13 296 39 2281 263 48 51 chr6 157506906 157507212 -31772342 - L1ME2 LINE L1 -4460 1755 1450 2070 111 96 6 chr6 157507212 157507546 -31772008 + THE1B LTR MaLR 1 364 0 2281 263 48 51 chr6 157507546 157507663 -31771891 - L1ME2 LINE L1 -4765 1450 1334 333 0 0 0 chr6 157507663 157507700 -31771854 + (TG)n Simple_repeat Simple_repeat 2 38 0 2281 263 48 51 chr6 157507700 157508112 -31771442 - L1ME2 LINE L1 -4881 1334 977 2268 142 22 42 chr6 157508133 157508277 -31771277 - LTR59 LTR ERV1 -6 591 446 2560 102 6 0 chr6 157508277 157508630 -31770924 - THE1A LTR MaLR 0 355 1 2268 142 22 42 chr6 157508630 157508935 -31770619 - LTR59 LTR ERV1 -151 446 151 733 138 8 15 chr6 157508935 157509065 -31770489 + THE1C LTR MaLR 1 129 -246 3964 100 5 0 chr6 157509984 157510535 -31769019 - MER41A LTR ERV1 0 554 1 11546 108 25 11 chr6 157510535 157512395 -31767159 - MER41A-int LTR ERV1 -3 5943 2426 194 231 0 0 chr6 157512528 157512567 -31766987 + L2 LINE L2 3271 3309 -4 41760 42 2 5 chr6 157512636 157518790 -31760764 - L1PA3 LINE L1 -5 6150 13 2084 107 30 84 chr6 157518801 157519158 -31760396 - MER41A-int LTR ERV1 -2232 3714 3384 197 33 33 0 chr6 157519158 157519188 -31760366 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 2084 107 30 84 chr6 157519188 157519269 -31760285 - MER41A-int LTR ERV1 -2562 3384 3300 * 4443 123 52 9 chr6 157519256 157520004 -31759550 - MER41A-int LTR ERV1 -3000 2946 2167 711 129 61 48 chr6 157520000 157520147 -31759407 - MER41A-int LTR ERV1 -4908 2629 2481 * 2066 143 57 0 chr6 157520151 157520502 -31759052 - MER41A-int LTR ERV1 -4184 1762 1392 4319 142 12 14 chr6 157520503 157520573 -31758981 - MER41A-int LTR ERV1 -5256 690 621 2041 126 67 14 chr6 157520573 157520929 -31758625 - THE1C LTR MaLR 0 375 1 9938 129 39 7 chr6 157520929 157522460 -31757094 - THE1C-int LTR MaLR 0 1580 1 1904 136 80 14 chr6 157522460 157522812 -31756742 - THE1C LTR MaLR 0 375 1 4319 142 12 14 chr6 157522812 157523431 -31756123 - MER41A-int LTR ERV1 -5322 624 1 3797 115 13 0 chr6 157523431 157523978 -31755576 - MER41A LTR ERV1 0 554 1 392 320 64 13 chr6 157527566 157527722 -31751832 - MER5A DNA MER1_type 0 189 26 367 320 16 48 chr6 157529223 157529473 -31750081 - MLT1K LTR MaLR -8 580 339 2051 121 10 0 chr6 157529715 157530020 -31749534 - AluSx SINE Alu -4 308 1 2150 117 41 83 chr6 157530175 157530770 -31748784 + MER4B LTR ERV1 1 743 -23 249 320 133 0 chr6 157531163 157531285 -31748269 - MIR SINE MIR -63 145 35 1827 157 0 11 chr6 157531313 157531655 -31747899 - AluJb SINE Alu 0 339 1 2313 110 0 3 chr6 157532179 157532513 -31747041 - AluSq SINE Alu 0 333 1 213 211 0 0 chr6 157532844 157532882 -31746672 + (TG)n Simple_repeat Simple_repeat 2 39 0 1579 149 10 137 chr6 157532974 157533154 -31746400 + MLT1A1 LTR MaLR 1 100 -265 2231 133 3 0 chr6 157533154 157533463 -31746091 + AluSx SINE Alu 1 310 -2 1579 149 10 137 chr6 157533463 157533699 -31745855 + MLT1A1 LTR MaLR 100 364 -1 7469 40 0 0 chr6 157535025 157536104 -31743450 + L1PA5 LINE L1 5076 6154 0 250 290 0 58 chr6 157536348 157536417 -31743137 + L2 LINE L2 3246 3310 -3 186 43 0 0 chr6 157537437 157537460 -31742094 + (TATG)n Simple_repeat Simple_repeat 3 25 0 2193 201 14 2 chr6 157537555 157537999 -31741555 - MLT2B1 LTR ERVL 0 520 72 5399 157 34 6 chr6 157538025 157538991 -31740563 - L1MA5 LINE L1 -3 6297 5283 285 29 0 0 chr6 157538991 157539025 -31740529 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5399 157 34 6 chr6 157539025 157539504 -31740050 - L1MA5 LINE L1 -1017 5283 4819 470 132 0 0 chr6 157539504 157539580 -31739974 - MLT2B1 LTR ERVL -444 76 1 222 179 9 47 chr6 157539580 157539686 -31739868 + (TA)n Simple_repeat Simple_repeat 2 103 0 1456 215 34 44 chr6 157541816 157542169 -31737385 - MLT1A1 LTR MaLR 0 428 3 4968 102 71 38 chr6 157542835 157543679 -31735875 - MER4D LTR ERV1 0 872 1 256 28 28 0 chr6 157545442 157545478 -31734076 - MLT2D LTR ERVL 0 414 378 630 210 72 0 chr6 157545489 157545656 -31733898 + Tigger2 DNA MER2_type 1 179 -2539 949 145 0 25 chr6 157545667 157545826 -31733728 + Tigger2 DNA MER2_type 2564 2718 0 24 32 0 0 chr6 157547965 157547996 -31731558 + AT_rich Low_complexity Low_complexity 1 31 0 190 286 111 0 chr6 157549495 157549558 -31729996 - MIR SINE MIR -102 106 37 408 276 117 68 chr6 157550157 157550567 -31728987 - LTR33 LTR ERVL -78 443 14 1788 183 0 16 chr6 157550778 157551090 -31728464 - AluJb SINE Alu -5 307 1 245 75 25 0 chr6 157552047 157552087 -31727467 + (TG)n Simple_repeat Simple_repeat 2 42 0 444 226 12 0 chr6 157552498 157552582 -31726972 + AluSx SINE Alu 1 85 -228 2220 101 75 54 chr6 157552582 157552969 -31726585 - MER48 LTR ERV1 0 398 4 13608 91 15 2 chr6 157552973 157554922 -31724632 - HERVH48 LTR ERV1 0 6654 4680 * 24866 108 34 10 chr6 157554905 157558936 -31720618 - HERVH48 LTR ERV1 -2526 4128 1 2567 108 0 50 chr6 157558936 157559333 -31720221 - MER48 LTR ERV1 -10 377 1 1173 170 35 26 chr6 157559333 157559563 -31719991 + AluSx SINE Alu 79 310 0 1542 164 74 47 chr6 157560057 157560422 -31719132 - THE1C LTR MaLR 0 375 1 2536 130 10 14 chr6 157560422 157560837 -31718717 - THE1C-int LTR MaLR 0 1580 1168 1811 177 0 18 chr6 157560821 157561149 -31718405 - THE1C-int LTR MaLR -643 937 616 * 574 160 96 16 chr6 157561199 157561324 -31718230 - THE1C LTR MaLR -238 137 3 185 361 65 28 chr6 157562248 157562356 -31717198 + L3b LINE CR1 1427 1538 -45 374 310 46 46 chr6 157562985 157563201 -31716353 - MLT1I LTR MaLR -93 316 101 574 211 12 82 chr6 157563309 157563480 -31716074 - L2 LINE L2 -5 3308 3150 265 92 22 2 chr6 157563480 157563529 -31716025 + MLT2B2 LTR ERVL 343 509 -6 324 313 18 9 chr6 157563626 157563738 -31715816 - L2 LINE L2 -225 3088 2976 * 1029 256 107 27 chr6 157563710 157564038 -31715516 - L2 LINE L2 -477 2837 2484 844 205 25 6 chr6 157564098 157564384 -31715170 + MSTD LTR MaLR 1 377 -19 911 279 55 12 chr6 157564384 157564638 -31714916 - L2 LINE L2 -943 2371 2107 1099 214 18 34 chr6 157564827 157565135 -31714419 - MLT2B2 LTR ERVL -2 513 245 293 380 23 0 chr6 157565288 157565417 -31714137 - ERVL LTR ERVL -1484 4280 4149 1185 155 4 75 chr6 157565559 157565824 -31713730 - MLT2B2 LTR ERVL -269 246 1 21 0 0 0 chr6 157565917 157565938 -31713616 + AT_rich Low_complexity Low_complexity 1 21 0 210 167 0 0 chr6 157566166 157566202 -31713352 + A-rich Low_complexity Low_complexity 1 36 0 * 265 274 0 0 chr6 157566193 157566255 -31713299 + GA-rich Low_complexity Low_complexity 4 65 0 25 65 0 0 chr6 157566998 157567044 -31712510 + AT_rich Low_complexity Low_complexity 1 46 0 723 324 30 59 chr6 157567722 157568247 -31711307 + HERVL LTR ERVL 4109 4618 -1036 548 292 0 0 chr6 157568501 157568662 -31710892 + HERVL LTR ERVL 4874 5034 -730 709 255 85 60 chr6 157569086 157569404 -31710150 + LTR16A LTR ERVL 125 450 0 237 179 0 0 chr6 157569449 157569488 -31710066 - LTR33 LTR ERVL -155 366 328 383 300 82 0 chr6 157569568 157569738 -31709816 - LTR33 LTR ERVL -331 190 7 25 65 0 0 chr6 157572412 157572458 -31707096 + AT_rich Low_complexity Low_complexity 1 46 0 509 283 27 85 chr6 157573469 157573490 -31706064 + L1ME4a LINE L1 786 807 -5565 1939 192 25 40 chr6 157573490 157573964 -31705590 - MLT1C LTR MaLR 0 467 1 509 283 27 85 chr6 157573964 157574680 -31704874 + L1ME4a LINE L1 807 1480 -4892 231 310 13 26 chr6 157574693 157574848 -31704706 + L1ME4a LINE L1 1418 1570 -4814 577 275 52 83 chr6 157575025 157575432 -31704122 + L1ME4a LINE L1 3898 4291 -2091 1362 261 44 21 chr6 157575480 157575962 -31703592 - L1MC4a LINE L1 0 7808 7316 427 265 20 13 chr6 157575995 157576146 -31703408 + L1ME4a LINE L1 4732 4883 -1499 13957 195 14 16 chr6 157576360 157578199 -31701355 + L1PB1 LINE L1 6 1848 -5019 2158 127 0 3 chr6 157578199 157578499 -31701055 + AluSg SINE Alu 1 299 -11 13957 195 14 16 chr6 157578499 157582868 -31696686 + L1PB1 LINE L1 1848 6487 -380 309 51 0 0 chr6 157582868 157582907 -31696647 + (CA)n Simple_repeat Simple_repeat 2 40 0 13957 195 14 16 chr6 157582907 157583287 -31696267 + L1PB1 LINE L1 6487 6866 -1 229 299 121 21 chr6 157583378 157583659 -31695895 + L1ME4a LINE L1 5197 5505 -877 242 161 54 0 chr6 157583670 157583726 -31695828 + HsTC2 DNA Tc2 13 71 -1827 226 293 40 0 chr6 157583732 157583807 -31695747 + L1ME4a LINE L1 5804 5881 -2163 185 62 0 31 chr6 157583946 157583978 -31695576 + (AATAG)n Simple_repeat Simple_repeat 2 32 0 273 352 37 11 chr6 157584110 157584380 -31695174 + L1ME4a LINE L1 5882 6158 -242 186 209 0 0 chr6 157584460 157584503 -31695051 + GA-rich Low_complexity Low_complexity 1 43 0 31 0 0 0 chr6 157584650 157584681 -31694873 + AT_rich Low_complexity Low_complexity 1 31 0 559 309 37 5 chr6 157586102 157586293 -31693261 - L2 LINE L2 -1596 1718 1522 30 45 0 0 chr6 157586515 157586559 -31692995 + AT_rich Low_complexity Low_complexity 1 44 0 1244 174 30 7 chr6 157586593 157586891 -31692663 - L1M2 LINE L1 -1451 4695 4391 * 3390 152 32 3 chr6 157586890 157587946 -31691608 + L1M2 LINE L1 4702 5793 -498 1249 128 31 18 chr6 157588157 157588384 -31691170 + L1PA12 LINE L1 2 231 -7350 347 316 37 42 chr6 157588388 157588951 -31690603 + L1PA12 LINE L1 1597 2080 -5501 8211 144 14 4 chr6 157589051 157590494 -31689060 + L1PA13 LINE L1 1698 3159 -4425 11496 181 2 12 chr6 157590510 157590853 -31688701 + L1PA13 LINE L1 4327 4672 -2929 429 36 0 0 chr6 157590853 157590908 -31688646 + (TA)n Simple_repeat Simple_repeat 1 55 0 11496 181 2 12 chr6 157590908 157590942 -31688612 + L1PA13 LINE L1 4672 4705 -2896 2417 84 0 0 chr6 157590942 157591253 -31688301 + AluY SINE Alu 1 311 0 11496 181 2 12 chr6 157591253 157594149 -31685405 + L1PA13 LINE L1 4705 7583 -18 28 79 0 0 chr6 157594162 157594225 -31685329 + AT_rich Low_complexity Low_complexity 1 63 0 325 209 19 76 chr6 157594326 157594484 -31685070 + L1ME4a LINE L1 6193 6341 -16 21 0 0 0 chr6 157596305 157596326 -31683228 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 157596359 157596380 -31683174 + AT_rich Low_complexity Low_complexity 1 21 0 317 324 7 29 chr6 157596491 157596627 -31682927 + MIR SINE MIR 29 161 -101 430 292 99 23 chr6 157597825 157597996 -31681558 - MER5A DNA MER1_type -5 184 1 389 215 74 8 chr6 157598218 157598339 -31681215 + Charlie7 DNA MER1_type 20 148 -2464 195 359 21 21 chr6 157599488 157599630 -31679924 - L2 LINE L2 -54 3259 3118 1284 147 11 0 chr6 157599763 157599954 -31679600 + AluSg/x SINE Alu 86 278 -32 288 0 0 0 chr6 157599956 157599988 -31679566 + (CAA)n Simple_repeat Simple_repeat 2 33 0 478 275 83 50 chr6 157599997 157600237 -31679317 + L1ME3 LINE L1 5914 6161 -1 254 339 0 45 chr6 157600270 157600382 -31679172 - MIR SINE MIR -141 121 15 2721 94 14 3 chr6 157600391 157600762 -31678792 + THE1C LTR MaLR 1 375 0 188 119 0 48 chr6 157600816 157600858 -31678696 + L2 LINE L2 3274 3313 0 189 0 0 0 chr6 157601388 157601409 -31678145 + (TG)n Simple_repeat Simple_repeat 2 22 0 29 0 0 0 chr6 157601553 157601582 -31677972 + AT_rich Low_complexity Low_complexity 1 29 0 5395 120 8 26 chr6 157601678 157602164 -31677390 - L1PA13 LINE L1 -3 6160 5667 1994 151 0 7 chr6 157602164 157602469 -31677085 - AluSx SINE Alu -9 303 1 5395 120 8 26 chr6 157602469 157603561 -31675993 - L1PA13 LINE L1 -496 5667 4662 1905 148 26 23 chr6 157603561 157603871 -31675683 - AluSx SINE Alu -1 311 1 5395 120 8 26 chr6 157603871 157604066 -31675488 - L1PA13 LINE L1 -1501 4662 4465 196 246 169 0 chr6 157604094 157604159 -31675395 - MIR SINE MIR -129 133 58 2253 84 0 0 chr6 157604336 157604610 -31674944 + AluSg SINE Alu 21 294 -16 793 144 52 87 chr6 157605417 157605614 -31673940 + AluSg/x SINE Alu 116 306 0 347 158 0 26 chr6 157605657 157605733 -31673821 + GA-rich Low_complexity Low_complexity 1 74 0 653 63 26 79 chr6 157605762 157605951 -31673603 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 332 226 39 29 chr6 157605951 157606053 -31673501 + GA-rich Low_complexity Low_complexity 1 103 0 353 289 91 41 chr6 157606784 157607026 -31672528 + MIR SINE MIR 9 262 0 3050 93 51 2 chr6 157607029 157607460 -31672094 + MLT2A2 LTR ERVL 1 452 -1 565 241 88 107 chr6 157609239 157609432 -31670122 - MIR SINE MIR -5 257 68 2033 135 0 3 chr6 157609432 157609757 -31669797 - AluSg SINE Alu 0 324 1 565 241 88 107 chr6 157609757 157609823 -31669731 - MIR SINE MIR -194 68 2 1692 124 45 0 chr6 157609828 157610070 -31669484 - AluSq SINE Alu -60 253 1 2826 175 9 23 chr6 157610623 157611092 -31668462 + MLT2B1 LTR ERVL 1 464 -56 2410 114 22 6 chr6 157611092 157611450 -31668104 - THE1B LTR MaLR 0 364 1 2826 175 9 23 chr6 157611450 157611507 -31668047 + MLT2B1 LTR ERVL 464 520 0 198 0 0 0 chr6 157611797 157611819 -31667735 + (TTCC)n Simple_repeat Simple_repeat 3 24 0 207 69 0 0 chr6 157611830 157611859 -31667695 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 185 86 57 0 chr6 157611871 157611906 -31667648 + CT-rich Low_complexity Low_complexity 3 39 0 294 337 10 0 chr6 157612111 157612209 -31667345 - MIR SINE MIR -63 145 47 204 227 23 0 chr6 157613465 157613509 -31666045 + CT-rich Low_complexity Low_complexity 2 46 0 420 232 16 16 chr6 157613859 157613984 -31665570 - L1MC4 LINE L1 -4 8038 7914 3082 232 31 33 chr6 157614060 157614777 -31664777 - MER21B LTR ERV1 -54 809 93 2070 129 0 3 chr6 157614777 157615072 -31664482 + AluSx SINE Alu 1 294 -18 3082 232 31 33 chr6 157615072 157615137 -31664417 - MER21B LTR ERV1 -770 93 29 424 211 0 22 chr6 157615175 157615265 -31664289 - MER21B LTR ERV1 -775 88 1 2140 181 26 111 chr6 157615285 157615943 -31663611 - L1MC4 LINE L1 -152 7890 7289 247 286 10 10 chr6 157615945 157616043 -31663511 + (TA)n Simple_repeat Simple_repeat 2 99 0 362 194 0 10 chr6 157616078 157616176 -31663378 + (TA)n Simple_repeat Simple_repeat 1 97 0 396 293 100 38 chr6 157616263 157616449 -31663105 - L1ME4a LINE L1 -213 5908 5735 3436 157 65 21 chr6 157616449 157617171 -31662383 + L1MA8 LINE L1 5536 6289 -2 396 293 100 38 chr6 157617171 157617325 -31662229 - L1ME4a LINE L1 -386 5735 5547 1671 206 3 14 chr6 157617334 157617683 -31661871 - MLT1A1 LTR MaLR 0 365 21 1083 286 42 5 chr6 157617830 157618207 -31661347 + L1MCc LINE L1 25 415 -6008 287 266 39 16 chr6 157618200 157618328 -31661226 + L1MCc LINE L1 1091 1221 -5202 * 718 266 25 13 chr6 157618390 157618627 -31660927 + L1MCc LINE L1 1246 1485 -4938 326 230 24 3 chr6 157618601 157618717 -31660837 + L1ME LINE L1 10 126 -5944 * 826 224 114 5 chr6 157618758 157618959 -31660595 - MER58A DNA MER1_type 0 224 2 702 327 135 8 chr6 157618988 157619413 -31660141 - L2 LINE L2 -239 3074 2599 190 356 168 20 chr6 157620311 157620412 -31659142 - MIR3 SINE MIR -42 166 51 213 292 108 0 chr6 157620487 157620552 -31659002 + MIR SINE MIR 70 141 -67 227 241 138 0 chr6 157620712 157620799 -31658755 + L2 LINE L2 3203 3301 -12 2493 54 0 7 chr6 157621581 157621877 -31657677 + AluSc SINE Alu 1 294 -15 1132 246 113 31 chr6 157621911 157622326 -31657228 + MLT1D LTR MaLR 54 502 -3 252 247 22 0 chr6 157622330 157622419 -31657135 - L1MC5 LINE L1 -242 7719 7629 191 361 93 28 chr6 157622471 157622579 -31656975 + L2 LINE L2 3138 3252 -20 3570 182 34 60 chr6 157622682 157623465 -31656089 - L1 LINE L1 -1072 5074 4319 1947 144 0 25 chr6 157623465 157623785 -31655769 - AluJo SINE Alu 0 312 1 3570 182 34 60 chr6 157623785 157623974 -31655580 - L1 LINE L1 -1827 4319 4127 * 4573 159 31 10 chr6 157623969 157625045 -31654509 + L1MB1 LINE L1 5068 6167 -1 24 32 0 0 chr6 157625045 157625076 -31654478 + AT_rich Low_complexity Low_complexity 1 31 0 188 314 38 48 chr6 157625113 157625218 -31654336 - MIR SINE MIR -111 151 48 959 142 0 42 chr6 157625514 157625704 -31653850 + L1M3 LINE L1 5417 5598 -570 1270 206 26 48 chr6 157625769 157626147 -31653407 + MLT1D LTR MaLR 1 370 -135 324 0 0 0 chr6 157626165 157626201 -31653353 + (TG)n Simple_repeat Simple_repeat 2 37 0 821 254 48 27 chr6 157626210 157626505 -31653049 + L1ME2 LINE L1 5827 6127 -37 1973 170 14 14 chr6 157626763 157627128 -31652426 + MLT1A1 LTR MaLR 1 365 0 1784 42 28 0 chr6 157627621 157627834 -31651720 - AluY SINE Alu -15 296 78 417 235 71 0 chr6 157628978 157629076 -31650478 - L2 LINE L2 -15 3257 3153 298 283 45 90 chr6 157629388 157629565 -31649989 - L2 LINE L2 -580 2734 2566 248 295 0 39 chr6 157631228 157631306 -31648248 - L2 LINE L2 -8 3264 3190 2227 129 30 19 chr6 157631543 157631914 -31647640 + THE1C LTR MaLR 1 375 0 9965 120 38 12 chr6 157631914 157632364 -31647190 + THE1C-int LTR MaLR 1 438 -1142 2429 86 3 0 chr6 157632364 157632666 -31646888 + AluY SINE Alu 1 303 -8 9965 120 38 12 chr6 157632666 157633756 -31645798 + THE1C-int LTR MaLR 438 1580 0 1500 148 7 22 chr6 157633756 157634060 -31645494 + THE1C LTR MaLR 1 375 0 28 48 0 0 chr6 157635465 157635507 -31644047 + AT_rich Low_complexity Low_complexity 1 42 0 310 197 158 79 chr6 157635900 157636027 -31643527 - MIR SINE MIR -59 203 67 1994 182 24 22 chr6 157636528 157636941 -31642613 + MLT2D LTR ERVL 1 414 0 267 31 0 0 chr6 157636988 157637020 -31642534 + (TA)n Simple_repeat Simple_repeat 1 32 0 228 182 0 0 chr6 157637128 157637172 -31642382 + (TATG)n Simple_repeat Simple_repeat 4 47 0 4199 156 72 18 chr6 157637172 157637645 -31641909 - MER6 DNA MER2_type -1 864 327 270 0 0 0 chr6 157637645 157637675 -31641879 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 4199 156 72 18 chr6 157637675 157638021 -31641533 - MER6 DNA MER2_type -538 327 1 210 71 0 0 chr6 157638024 157638052 -31641502 + (CA)n Simple_repeat Simple_repeat 2 29 0 337 148 19 0 chr6 157638656 157638710 -31640844 + MER6 DNA MER2_type 304 358 -507 22 0 0 0 chr6 157640322 157640344 -31639210 + AT_rich Low_complexity Low_complexity 1 22 0 300 261 30 82 chr6 157640351 157640485 -31639069 - MIR3 SINE MIR -51 157 31 6379 81 21 2 chr6 157640632 157641960 -31637594 - L1PA8 LINE L1 -18 6154 4812 192 40 0 0 chr6 157642130 157642155 -31637399 + (CA)n Simple_repeat Simple_repeat 2 26 0 609 277 126 19 chr6 157642789 157643060 -31636494 + LTR16B LTR ERVL 165 464 0 500 137 34 43 chr6 157643404 157643521 -31636033 + L1MC1 LINE L1 5946 6061 -272 4419 137 18 12 chr6 157643567 157644326 -31635228 + L1MC1 LINE L1 5551 6314 -19 5348 72 7 10 chr6 157644595 157645285 -31634269 + LTR12 LTR ERV1 1 688 0 207 283 0 19 chr6 157645536 157645589 -31633965 - L2 LINE L2 -5 3308 3257 1368 192 46 13 chr6 157646116 157646418 -31633136 + AluJb SINE Alu 1 312 0 23 0 0 0 chr6 157646676 157646699 -31632855 + AT_rich Low_complexity Low_complexity 1 23 0 291 301 142 24 chr6 157647887 157648062 -31631492 + MIR SINE MIR 2 191 -51 1752 150 35 7 chr6 157648102 157648388 -31631166 - AluSg SINE Alu -16 294 1 238 275 15 21 chr6 157648618 157648703 -31630851 + GA-rich Low_complexity Low_complexity 1 84 0 23 0 0 0 chr6 157651716 157651739 -31627815 + AT_rich Low_complexity Low_complexity 1 23 0 341 288 153 0 chr6 157652814 157652925 -31626629 + L1MC5 LINE L1 7713 7840 -121 27 0 0 0 chr6 157652986 157653013 -31626541 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr6 157653169 157653208 -31626346 + AT_rich Low_complexity Low_complexity 1 39 0 1899 157 3 19 chr6 157655213 157655526 -31624028 + AluJb SINE Alu 1 308 -4 817 197 7 0 chr6 157656652 157656804 -31622750 - FRAM SINE Alu -13 153 1 27 29 0 0 chr6 157657120 157657154 -31622400 + AT_rich Low_complexity Low_complexity 1 34 0 218 184 0 0 chr6 157657843 157657881 -31621673 + A-rich Low_complexity Low_complexity 2 39 0 445 286 18 0 chr6 157658030 157658142 -31621412 + MIR3 SINE MIR 89 202 -6 21 0 0 0 chr6 157658452 157658473 -31621081 + AT_rich Low_complexity Low_complexity 1 21 0 205 177 152 89 chr6 157658575 157658654 -31620900 + L3 LINE CR1 602 685 -892 930 321 100 48 chr6 157659023 157659812 -31619742 + L2 LINE L2 1550 2379 -935 643 314 86 42 chr6 157659870 157660207 -31619347 + L2 LINE L2 2962 3313 0 375 312 24 16 chr6 157660524 157660649 -31618905 - L2 LINE L2 -4 3268 3143 2146 109 10 3 chr6 157661188 157661482 -31618072 + AluSg SINE Alu 1 296 -14 54 62 0 0 chr6 157661553 157661649 -31617905 + AT_rich Low_complexity Low_complexity 1 96 0 1648 174 27 24 chr6 157661741 157662035 -31617519 - AluJo SINE Alu -17 295 1 23 68 0 0 chr6 157663343 157663387 -31616167 + AT_rich Low_complexity Low_complexity 1 44 0 207 0 0 0 chr6 157663733 157663756 -31615798 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2161 122 0 0 chr6 157663870 157664166 -31615388 - AluSg SINE Alu -14 296 1 1676 174 19 29 chr6 157665726 157666036 -31613518 - AluJo SINE Alu -2 310 4 2032 130 46 30 chr6 157666958 157667326 -31612228 + THE1C LTR MaLR 1 374 -1 215 78 0 78 chr6 157667526 157667590 -31611964 + (TAAAAA)n Simple_repeat Simple_repeat 6 64 0 2190 154 5 22 chr6 157667806 157668176 -31611378 + THE1B LTR MaLR 1 364 0 11315 104 11 0 chr6 157668176 157669739 -31609815 + THE1B-int LTR MaLR 1 1580 0 2184 159 5 22 chr6 157669739 157670109 -31609445 + THE1B LTR MaLR 1 364 0 226 380 70 52 chr6 157670452 157670955 -31608599 + L2 LINE L2 2551 3062 -210 244 167 0 24 chr6 157670988 157671030 -31608524 + L2 LINE L2 3180 3220 -93 15325 22 0 0 chr6 157671074 157673643 -31605911 + L1PA2 LINE L1 3589 6153 -2 374 177 21 52 chr6 157675422 157675518 -31604036 - L2 LINE L2 0 3313 3221 201 250 0 0 chr6 157676096 157676140 -31603414 + MIR SINE MIR 91 134 -74 230 407 74 0 chr6 157677043 157677151 -31602403 + L2 LINE L2 3139 3254 -18 2173 124 3 10 chr6 157677490 157677796 -31601758 - AluSx SINE Alu -8 304 1 187 341 81 8 chr6 157677884 157678007 -31601547 - L2 LINE L2 0 3313 3182 189 74 0 0 chr6 157678610 157678637 -31600917 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 309 189 14 40 chr6 157681177 157681251 -31598303 - MER115 DNA AcHobo 0 693 622 342 0 0 0 chr6 157681871 157681909 -31597645 + (TG)n Simple_repeat Simple_repeat 1 38 0 24 32 0 0 chr6 157685043 157685074 -31594480 + AT_rich Low_complexity Low_complexity 1 31 0 2803 161 48 0 chr6 157686279 157686799 -31592755 + L1MB3 LINE L1 5637 6181 -2 211 336 51 44 chr6 157686805 157686942 -31592612 - MIR3 SINE MIR -68 140 3 808 142 8 15 chr6 157688622 157688756 -31590798 - FLAM_C SINE Alu 0 133 1 22 35 0 0 chr6 157689674 157689703 -31589851 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr6 157689816 157689851 -31589703 + AT_rich Low_complexity Low_complexity 1 35 0 207 298 105 9 chr6 157690777 157690891 -31588663 + L2 LINE L2 3177 3301 -12 682 180 57 103 chr6 157690992 157691146 -31588408 + MER5A DNA MER1_type 5 150 -39 2159 109 3 13 chr6 157691146 157691450 -31588104 - AluSx SINE Alu -11 301 1 682 180 57 103 chr6 157691450 157691489 -31588065 + MER5A DNA MER1_type 150 189 0 23 33 0 0 chr6 157692487 157692517 -31587037 + AT_rich Low_complexity Low_complexity 1 30 0 27 73 0 0 chr6 157692683 157692738 -31586816 + AT_rich Low_complexity Low_complexity 1 55 0 381 359 47 5 chr6 157694374 157694566 -31584988 - MIR SINE MIR -35 227 28 212 179 0 0 chr6 157696925 157696964 -31582590 + (TA)n Simple_repeat Simple_repeat 2 40 0 181 330 89 62 chr6 157697061 157697240 -31582314 - L2 LINE L2 -219 3053 2870 1762 175 10 3 chr6 157697366 157697663 -31581891 - AluJb SINE Alu -12 300 2 27 49 0 0 chr6 157698441 157698482 -31581072 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr6 157698552 157698574 -31580980 + AT_rich Low_complexity Low_complexity 1 22 0 1755 147 0 43 chr6 157700929 157701228 -31578326 + AluJo SINE Alu 16 301 -11 345 284 18 0 chr6 157702090 157702199 -31577355 - MER103 DNA DNA -49 117 7 320 242 55 0 chr6 157702448 157702539 -31577015 + Charlie7 DNA MER1_type 2 97 -2515 500 242 37 63 chr6 157703025 157703215 -31576339 - MIR SINE MIR -41 221 37 36 53 0 0 chr6 157703341 157703398 -31576156 + AT_rich Low_complexity Low_complexity 1 57 0 24 67 0 0 chr6 157703678 157703723 -31575831 + AT_rich Low_complexity Low_complexity 1 45 0 405 0 0 0 chr6 157704329 157704374 -31575180 + (TG)n Simple_repeat Simple_repeat 2 46 0 465 249 101 50 chr6 157704744 157705021 -31574533 + L1MC4a LINE L1 5734 6024 -1784 23 33 0 0 chr6 157705130 157705160 -31574394 + AT_rich Low_complexity Low_complexity 1 30 0 190 223 0 106 chr6 157706595 157706689 -31572865 + L3 LINE CR1 1351 1434 -143 1959 154 24 32 chr6 157706988 157707357 -31572197 + MER47A DNA MER2_type 1 366 0 5102 154 10 8 chr6 157708730 157709593 -31569961 + MER6 DNA MER2_type 1 865 0 979 264 95 24 chr6 157709919 157710382 -31569172 - MER113 DNA MER1_type? -3 518 23 31 44 0 0 chr6 157711548 157711593 -31567961 + AT_rich Low_complexity Low_complexity 1 45 0 262 333 33 19 chr6 157712282 157712415 -31567139 + MIR SINE MIR 10 151 -57 24 32 0 0 chr6 157712689 157712720 -31566834 + AT_rich Low_complexity Low_complexity 1 31 0 27 73 0 0 chr6 157713160 157713215 -31566339 + AT_rich Low_complexity Low_complexity 1 55 0 198 329 14 0 chr6 157713959 157714029 -31565525 + MIR SINE MIR 70 140 -122 245 176 39 0 chr6 157714520 157714571 -31564983 + L1MD3 LINE L1 6616 6668 -1327 227 200 0 0 chr6 157714531 157714576 -31564978 - L1MC4 LINE L1 -1339 6703 6659 * 192 170 43 43 chr6 157714893 157714940 -31564614 - L2 LINE L2 -3 3310 3264 3742 98 56 22 chr6 157715416 157716005 -31563549 + MER4B LTR ERV1 1 609 -1 2438 58 0 0 chr6 157716029 157716323 -31563231 - AluY SINE Alu -17 294 1 239 345 134 22 chr6 157716775 157717134 -31562420 - L2 LINE L2 -1108 2206 1808 2107 142 35 38 chr6 157718269 157718691 -31560863 + MER61C LTR ERV1 14 434 0 24 85 0 0 chr6 157719112 157719171 -31560383 + AT_rich Low_complexity Low_complexity 1 59 0 23 33 0 0 chr6 157719893 157719923 -31559631 + AT_rich Low_complexity Low_complexity 1 30 0 1848 154 26 31 chr6 157720644 157721026 -31558528 + L1MA8 LINE L1 5906 6285 -6 23 0 0 0 chr6 157721026 157721049 -31558505 + AT_rich Low_complexity Low_complexity 1 23 0 472 278 141 13 chr6 157721228 157721455 -31558099 - Charlie8 DNA MER1_type -2121 296 41 821 232 11 0 chr6 157721629 157721806 -31557748 - MER58A DNA MER1_type 0 224 46 704 148 9 0 chr6 157721812 157721927 -31557627 + FLAM_A SINE Alu 25 140 -2 1569 195 0 16 chr6 157721966 157722274 -31557280 + AluJo SINE Alu 2 304 -8 778 319 15 27 chr6 157722584 157722847 -31556707 + MIR SINE MIR 1 260 -2 2360 90 0 7 chr6 157724024 157724334 -31555220 + AluY SINE Alu 1 308 -3 2046 132 0 14 chr6 157724342 157724638 -31554916 + AluSx SINE Alu 1 292 -20 241 279 0 0 chr6 157724881 157724942 -31554612 + (TA)n Simple_repeat Simple_repeat 1 61 0 560 270 127 11 chr6 157726272 157726461 -31553093 + MIR SINE MIR 13 223 -39 250 250 0 62 chr6 157726883 157726995 -31552559 + L1ME4a LINE L1 5968 6072 -49 28 61 0 0 chr6 157726998 157727047 -31552507 + AT_rich Low_complexity Low_complexity 1 49 0 394 287 0 20 chr6 157728926 157729027 -31550527 - L2 LINE L2 0 3313 3215 1146 118 12 0 chr6 157729040 157729201 -31550353 - AluSg/x SINE Alu -14 298 136 227 323 78 47 chr6 157729250 157729442 -31550112 - L2 LINE L2 -185 3128 2931 241 346 206 0 chr6 157729459 157729566 -31549988 + L2 LINE L2 3140 3268 -4 27 62 0 0 chr6 157729828 157729876 -31549678 + AT_rich Low_complexity Low_complexity 1 48 0 458 303 48 24 chr6 157730269 157730434 -31549120 + L2 LINE L2 3103 3271 -1 670 158 79 7 chr6 157730937 157731076 -31548478 - FRAM SINE Alu -23 153 5 715 269 28 0 chr6 157731114 157731296 -31548258 + MIR SINE MIR 76 262 0 412 299 83 6 chr6 157731604 157731761 -31547793 - MIR SINE MIR -54 208 40 215 250 158 0 chr6 157734400 157734476 -31545078 + MER5A DNA MER1_type 19 106 -83 2085 118 16 7 chr6 157734857 157735163 -31544391 + AluSg SINE Alu 1 309 -1 361 367 105 52 chr6 157736036 157736475 -31543079 - L2 LINE L2 -7 3265 2804 1801 142 16 35 chr6 157736582 157736893 -31542661 - AluJb SINE Alu -7 305 1 2009 93 36 11 chr6 157736904 157737184 -31542370 - AluSg SINE Alu -23 287 1 183 290 29 14 chr6 157737789 157737858 -31541696 + MIR SINE MIR 187 256 -6 21 0 0 0 chr6 157738873 157738894 -31540660 + AT_rich Low_complexity Low_complexity 1 21 0 203 256 0 0 chr6 157738898 157738941 -31540613 - MIR SINE MIR 0 262 220 258 351 22 1 chr6 157739004 157739109 -31540445 + MIR SINE MIR 35 141 -67 1345 106 5 21 chr6 157741396 157741612 -31537942 - AluSg/x SINE Alu 0 310 98 27 0 0 0 chr6 157741651 157741678 -31537876 + AT_rich Low_complexity Low_complexity 1 27 0 32 0 0 0 chr6 157742544 157742576 -31536978 + AT_rich Low_complexity Low_complexity 1 32 0 4703 140 13 4 chr6 157743184 157743939 -31535615 - L1PA16 LINE L1 -6 6160 5399 3381 194 25 20 chr6 157743944 157744543 -31535011 - L1PA16 LINE L1 -829 5317 4711 2155 64 32 21 chr6 157744543 157744855 -31534699 - AluY SINE Alu 0 315 1 3381 194 25 20 chr6 157744855 157745016 -31534538 - L1PA16 LINE L1 -1435 4711 4552 356 350 0 0 chr6 157745379 157745499 -31534055 - MIR3 SINE MIR -14 194 75 268 286 107 0 chr6 157745993 157746077 -31533477 + MIR SINE MIR 68 160 -102 1005 297 50 10 chr6 157746182 157746600 -31532954 + LTR16A LTR ERVL 16 450 0 244 234 16 31 chr6 157748613 157748677 -31530877 + L2 LINE L2 3176 3238 -34 3937 65 0 0 chr6 157748794 157749288 -31530266 - L1PA7 LINE L1 -23 6131 5638 2145 76 3 0 chr6 157749290 157749580 -31529974 + L1P3 LINE L1 5285 5575 -579 23 33 0 0 chr6 157752404 157752434 -31527120 + AT_rich Low_complexity Low_complexity 1 30 0 24 77 0 0 chr6 157752753 157752805 -31526749 + AT_rich Low_complexity Low_complexity 1 52 0 36 0 0 0 chr6 157752937 157752973 -31526581 + AT_rich Low_complexity Low_complexity 1 36 0 334 333 58 13 chr6 157753954 157754110 -31525444 - MIR3 SINE MIR -3 205 43 312 107 66 33 chr6 157754124 157754246 -31525308 + (TTATA)n Simple_repeat Simple_repeat 5 130 0 472 99 39 50 chr6 157754259 157754440 -31525114 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 474 310 13 6 chr6 157754463 157754621 -31524933 - MIR SINE MIR -91 171 13 36 62 0 0 chr6 157757282 157757346 -31522208 + AT_rich Low_complexity Low_complexity 1 64 0 2466 37 41 0 chr6 157757501 157757795 -31521759 + AluY SINE Alu 1 306 -5 198 333 88 31 chr6 157758903 157759095 -31520459 + MIR SINE MIR 1 203 -59 213 240 0 0 chr6 157759107 157759157 -31520397 + (TA)n Simple_repeat Simple_repeat 1 50 0 347 333 48 52 chr6 157759936 157760206 -31519348 + L2 LINE L2 1994 2262 -1052 731 281 73 15 chr6 157761075 157761335 -31518219 - L3 LINE CR1 -1 1576 1302 370 265 80 9 chr6 157761869 157762007 -31517547 + MIR SINE MIR 2 154 -73 704 200 0 0 chr6 157762159 157762284 -31517270 + FLAM_C SINE Alu 1 125 -18 22 0 0 0 chr6 157763403 157763425 -31516129 + AT_rich Low_complexity Low_complexity 1 22 0 906 61 91 0 chr6 157765455 157765587 -31513967 - L1PA13 LINE L1 -2 6161 6018 848 56 0 0 chr6 157765588 157765695 -31513859 + L1PA12 LINE L1 5804 5910 -258 223 351 20 46 chr6 157818799 157818950 -31460604 - MIR3 SINE MIR -20 188 42 931 207 5 36 chr6 157819474 157819696 -31459858 - MER20 DNA MER1_type -2 217 3 23 54 0 0 chr6 157821596 157821633 -31457921 + AT_rich Low_complexity Low_complexity 1 37 0 328 250 164 0 chr6 157822223 157822339 -31457215 + MIR SINE MIR 65 199 -63 180 304 14 43 chr6 157823293 157823362 -31456192 + MIR3 SINE MIR 132 198 -10 348 360 146 30 chr6 157823737 157824031 -31455523 + L2 LINE L2 1858 2117 -1197 2076 137 0 13 chr6 157824031 157824345 -31455209 + AluJb SINE Alu 1 310 -2 348 360 146 30 chr6 157824345 157824544 -31455010 + L2 LINE L2 2117 2408 -906 220 318 16 0 chr6 157824708 157824771 -31454783 + L2 LINE L2 3201 3264 -8 1675 171 17 27 chr6 157825115 157825413 -31454141 - AluJb SINE Alu -17 295 1 216 97 0 0 chr6 157828429 157828460 -31451094 + (GA)n Simple_repeat Simple_repeat 2 32 0 249 212 372 15 chr6 157830626 157830763 -31448791 + MER5A DNA MER1_type 4 189 0 21 0 0 0 chr6 157831573 157831594 -31447960 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 157832713 157832743 -31446811 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 157832835 157832856 -31446698 + AT_rich Low_complexity Low_complexity 1 21 0 253 325 37 37 chr6 157832952 157833115 -31446439 + L1ME LINE L1 5497 5659 -462 229 248 138 28 chr6 157833205 157833314 -31446240 + L1ME LINE L1 5794 5914 -207 27 0 0 0 chr6 157833455 157833482 -31446072 + AT_rich Low_complexity Low_complexity 1 27 0 258 268 84 0 chr6 157833881 157833952 -31445602 + MIR3 SINE MIR 78 154 -54 25 0 0 0 chr6 157836099 157836124 -31443430 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr6 157838941 157838970 -31440584 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr6 157839094 157839123 -31440431 + AT_rich Low_complexity Low_complexity 1 29 0 424 270 79 16 chr6 157840318 157840444 -31439110 + L2 LINE L2 3180 3313 0 28 0 0 0 chr6 157840498 157840526 -31439028 + AT_rich Low_complexity Low_complexity 1 28 0 2240 102 0 7 chr6 157840526 157840820 -31438734 - AluSq SINE Alu -21 292 1 255 175 48 95 chr6 157840932 157840995 -31438559 + L2 LINE L2 3213 3272 0 1687 127 28 0 chr6 157841165 157841417 -31438137 + AluJo SINE Alu 54 312 0 2234 132 0 0 chr6 157841478 157841818 -31437736 + AluSq SINE Alu 1 340 0 2706 131 106 10 chr6 157842266 157842747 -31436807 - MER1A DNA MER1_type 0 527 1 253 229 31 34 chr6 157844255 157844579 -31434975 + (TTATA)n Simple_repeat Simple_repeat 1 323 0 268 140 79 6 chr6 157844583 157844747 -31434807 + (TA)n Simple_repeat Simple_repeat 1 176 0 273 299 89 64 chr6 157845956 157846176 -31433378 - MIR SINE MIR -6 256 34 186 183 133 17 chr6 157846256 157846316 -31433238 + L3 LINE CR1 626 692 -885 2243 113 3 3 chr6 157847058 157847369 -31432185 - AluSq SINE Alu -2 311 1 218 325 43 51 chr6 157849580 157849697 -31429857 - L2 LINE L2 -1 3312 3197 21 0 0 0 chr6 157851255 157851276 -31428278 + AT_rich Low_complexity Low_complexity 1 21 0 209 128 26 0 chr6 157851828 157851867 -31427687 + T-rich Low_complexity Low_complexity 2 41 0 600 253 55 33 chr6 157852685 157852867 -31426687 + MIR SINE MIR 11 196 -66 869 265 56 4 chr6 157852882 157853116 -31426438 + MIR SINE MIR 15 260 -2 1450 136 0 9 chr6 157855764 157855985 -31423569 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr6 157856180 157856208 -31423346 + AT_rich Low_complexity Low_complexity 1 28 0 253 263 119 47 chr6 157857014 157857199 -31422355 + MIR SINE MIR 41 259 -3 486 316 52 10 chr6 157857408 157857601 -31421953 - MIR SINE MIR -50 212 12 22 0 0 0 chr6 157858302 157858324 -31421230 + AT_rich Low_complexity Low_complexity 1 22 0 180 414 72 0 chr6 157861428 157861609 -31417945 - L2 LINE L2 -267 3005 2812 * 229 225 70 14 chr6 157861597 157861668 -31417886 - MIR3 SINE MIR -29 179 105 1700 309 107 28 chr6 157861672 157863017 -31416537 - L2 LINE L2 -10 3303 1768 252 252 54 72 chr6 157863013 157863124 -31416430 - MIR3 SINE MIR -98 110 2 * 1603 199 18 0 chr6 157863500 157863616 -31415938 + AluJb SINE Alu 1 113 -199 237 33 0 0 chr6 157863616 157863646 -31415908 + (CA)n Simple_repeat Simple_repeat 1 30 0 1603 199 18 0 chr6 157863646 157863815 -31415739 + AluJb SINE Alu 113 291 -21 228 86 0 0 chr6 157864715 157864750 -31414804 + (TG)n Simple_repeat Simple_repeat 2 36 0 443 344 5 36 chr6 157865650 157865842 -31413712 + MIR SINE MIR 20 205 -57 227 350 65 35 chr6 157865906 157866106 -31413448 - L2 LINE L2 -539 2775 2570 343 287 58 0 chr6 157866667 157866754 -31412800 + L2 LINE L2 3158 3249 -23 181 354 42 10 chr6 157867618 157867714 -31411840 + L2 LINE L2 2376 2474 -840 183 200 183 33 chr6 157868330 157868390 -31411164 + MIR3 SINE MIR 115 183 -25 1807 178 0 10 chr6 157869085 157869383 -31410171 + AluJo SINE Alu 1 295 -17 223 258 0 16 chr6 157871389 157871451 -31408103 + GA-rich Low_complexity Low_complexity 4 64 0 239 220 0 20 chr6 157872065 157872115 -31407439 + C-rich Low_complexity Low_complexity 1 49 0 334 197 53 0 chr6 157874968 157875044 -31404510 - AluJ/FRAM SINE Alu 0 302 223 617 250 0 0 chr6 157875063 157875183 -31404371 - FLAM_C SINE Alu -23 120 1 24 0 0 0 chr6 157875194 157875218 -31404336 + AT_rich Low_complexity Low_complexity 1 24 0 236 343 104 32 chr6 157875450 157875730 -31403824 + L2 LINE L2 2455 2754 -560 334 351 44 9 chr6 157875770 157875884 -31403670 + L2 LINE L2 3116 3233 -39 1508 190 56 0 chr6 157875947 157876246 -31403308 + AluJo SINE Alu 1 314 0 256 241 255 48 chr6 157876345 157876490 -31403064 + MIR SINE MIR 88 262 0 750 178 70 6 chr6 157876580 157876737 -31402817 + MER3 DNA MER1_type 43 209 0 296 277 18 54 chr6 157877286 157877398 -31402156 + MIR3 SINE MIR 5 112 -96 52 0 0 0 chr6 157878155 157878207 -31401347 + AT_rich Low_complexity Low_complexity 1 52 0 339 346 65 7 chr6 157878357 157878510 -31401044 + MIR3 SINE MIR 47 208 0 516 277 57 44 chr6 157879860 157880090 -31399464 + MIR SINE MIR 10 248 -14 482 328 90 0 chr6 157880211 157880388 -31399166 - MIR SINE MIR -50 212 20 404 332 71 20 chr6 157880745 157880941 -31398613 - MIR SINE MIR -50 212 7 784 255 77 8 chr6 157881379 157881614 -31397940 - MIR SINE MIR -11 251 1 192 186 17 68 chr6 157882223 157882282 -31397272 - MER5A DNA MER1_type -90 99 44 1264 287 101 17 chr6 157883807 157884502 -31395052 + L1ME3A LINE L1 5296 6048 -122 299 315 63 0 chr6 157884631 157884758 -31394796 + L2 LINE L2 3137 3271 -1 305 349 61 15 chr6 157884950 157885082 -31394472 - MIR SINE MIR -105 157 20 2139 112 17 0 chr6 157885136 157885423 -31394131 + AluSx SINE Alu 1 292 -20 23 0 0 0 chr6 157885425 157885448 -31394106 + AT_rich Low_complexity Low_complexity 1 23 0 293 344 117 47 chr6 157885469 157886094 -31393460 + L2 LINE L2 2373 3049 -223 303 211 0 21 chr6 157888751 157888846 -31390708 + L1MC4a LINE L1 6919 7011 -797 308 174 203 0 chr6 157888849 157888918 -31390636 + MLT1F1 LTR MaLR 40 122 -445 865 193 40 10 chr6 157888920 157889137 -31390417 + L1MD3 LINE L1 7311 7583 -412 2151 113 0 7 chr6 157892608 157892899 -31386655 + AluSx SINE Alu 3 291 -21 25 0 0 0 chr6 157893100 157893125 -31386429 + AT_rich Low_complexity Low_complexity 1 25 0 191 125 0 0 chr6 157894277 157894309 -31385245 + L2 LINE L2 3241 3272 0 207 0 0 0 chr6 157895611 157895634 -31383920 + (A)n Simple_repeat Simple_repeat 1 23 0 302 394 0 16 chr6 157896437 157896564 -31382990 - L2 LINE L2 -1 3271 3147 2232 108 0 3 chr6 157897077 157897373 -31382181 + AluSc SINE Alu 1 295 -14 190 0 67 0 chr6 157897377 157897407 -31382147 + (CAA)n Simple_repeat Simple_repeat 2 33 0 401 324 50 11 chr6 157897497 157897679 -31381875 + MER5A DNA MER1_type 1 189 0 189 0 0 0 chr6 157897896 157897917 -31381637 + (A)n Simple_repeat Simple_repeat 1 21 0 199 114 91 23 chr6 157898279 157898323 -31381231 - MIR SINE MIR -97 165 119 321 235 0 24 chr6 157898519 157898604 -31380950 + (TG)n Simple_repeat Simple_repeat 2 84 0 819 177 6 18 chr6 157898822 157898986 -31380568 - MER3 DNA MER1_type 0 209 48 1964 137 7 0 chr6 157899298 157899605 -31379949 + MER1B DNA MER1_type 28 336 -3 242 158 0 0 chr6 157899780 157899818 -31379736 - MIR SINE MIR -108 154 117 532 182 47 53 chr6 157900969 157901139 -31378415 + MER104 DNA Tc2 12 180 0 337 293 9 19 chr6 157901141 157901247 -31378307 + MIR SINE MIR 158 262 0 232 209 134 0 chr6 157901375 157901442 -31378112 + L2 LINE L2 3238 3313 0 188 331 0 73 chr6 157901614 157901738 -31377816 + L2 LINE L2 2941 3055 -217 1052 199 37 49 chr6 157901928 157902338 -31377216 + MLT1C LTR MaLR 1 459 -8 1110 318 76 73 chr6 157902351 157903607 -31375947 + L2 LINE L2 2004 3266 -6 2056 138 10 0 chr6 157904539 157904828 -31374726 - AluSx SINE Alu -18 294 3 868 117 0 8 chr6 157904975 157905103 -31374451 - AluSq/x SINE Alu -185 127 1 1783 168 0 3 chr6 157907457 157907742 -31371812 + AluJo SINE Alu 1 284 -28 198 103 0 0 chr6 157907773 157907802 -31371752 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 385 331 58 7 chr6 157907848 157907987 -31371567 + MIR SINE MIR 21 166 -96 1932 130 25 0 chr6 157908017 157908301 -31371253 + AluSx SINE Alu 1 291 -21 198 192 0 0 chr6 157908718 157908770 -31370784 + GA-rich Low_complexity Low_complexity 3 54 0 195 162 0 0 chr6 157909142 157909179 -31370375 + GA-rich Low_complexity Low_complexity 1 37 0 270 346 15 0 chr6 157911154 157911284 -31368270 + L2 LINE L2 1925 2056 -1258 260 346 47 0 chr6 157911287 157911414 -31368140 + L2 LINE L2 2791 2922 -391 707 251 114 18 chr6 157911725 157911952 -31367602 - MIR SINE MIR -12 250 2 2397 72 3 3 chr6 157912278 157912570 -31366984 + AluSg1 SINE Alu 1 292 -17 757 169 54 0 chr6 157912856 157912986 -31366568 - MER45A DNA AcHobo -41 137 1 318 362 78 0 chr6 157913541 157913682 -31365872 - L2 LINE L2 0 3272 3121 21 0 0 0 chr6 157915421 157915442 -31364112 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 157916046 157916079 -31363475 + GC_rich Low_complexity Low_complexity 1 33 0 35 0 0 0 chr6 157916225 157916260 -31363294 + GC_rich Low_complexity Low_complexity 1 35 0 1309 154 0 5 chr6 157917289 157917490 -31362064 + L1MC1 LINE L1 6129 6328 -5 659 307 66 17 chr6 157921769 157922102 -31357452 + L3 LINE CR1 1162 1570 -7 1781 152 0 10 chr6 157924493 157924782 -31354772 + AluJb SINE Alu 1 286 -26 1179 123 6 0 chr6 157925184 157925354 -31354200 + AluJb SINE Alu 127 297 -15 2047 115 11 0 chr6 157925429 157925715 -31353839 - AluSg SINE Alu -21 289 1 236 143 0 0 chr6 157925829 157925871 -31353683 - L1MC4 LINE L1 -1332 6710 6669 516 200 7 100 chr6 157926020 157926160 -31353394 + L2 LINE L2 3187 3313 0 424 283 185 0 chr6 157926592 157926797 -31352757 - MIR SINE MIR -4 258 16 317 323 67 36 chr6 157926922 157927145 -31352409 + MIR SINE MIR 13 242 -20 495 294 65 33 chr6 157927285 157927469 -31352085 - MIR3 SINE MIR -3 205 16 202 297 110 42 chr6 157929839 157929957 -31349597 + L2 LINE L2 3145 3270 -2 261 57 0 0 chr6 157933645 157933680 -31345874 + (CA)n Simple_repeat Simple_repeat 1 35 0 303 104 0 0 chr6 157934132 157934180 -31345374 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 393 285 154 66 chr6 157934195 157934605 -31344949 + L1M2 LINE L1 509 954 -5895 23 78 0 0 chr6 157935010 157935061 -31344493 + GC_rich Low_complexity Low_complexity 1 51 0 339 113 0 0 chr6 157935185 157935238 -31344316 + (GGA)n Simple_repeat Simple_repeat 2 54 0 195 162 0 0 chr6 157935611 157935648 -31343906 + GA-rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr6 157936799 157936827 -31342727 + GC_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr6 157937148 157937172 -31342382 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 865 146 0 0 chr6 157938043 157938180 -31341374 - AluJb SINE Alu -4 308 172 721 277 111 81 chr6 157938771 157939204 -31340350 - L2 LINE L2 -5 3308 2863 214 231 115 77 chr6 157939240 157939344 -31340210 - MER5A DNA MER1_type -28 161 54 * 217 352 40 24 chr6 157939262 157939387 -31340167 + MER5A DNA MER1_type 63 189 0 480 287 138 21 chr6 157939479 157939768 -31339786 - MLT1K LTR MaLR -2 586 264 250 419 39 0 chr6 157940608 157940787 -31338767 + MER5A DNA MER1_type 1 186 -3 181 274 191 0 chr6 157941985 157942069 -31337485 + MIR SINE MIR 52 151 -57 423 205 138 129 chr6 157943677 157943901 -31335653 - L1ME3 LINE L1 -38 6124 5901 630 285 82 51 chr6 157943932 157944388 -31335166 - L2 LINE L2 -34 3279 2791 354 267 127 24 chr6 157945806 157945971 -31333583 + MIR SINE MIR 32 213 -49 498 236 57 0 chr6 157946009 157946132 -31333422 + MIR3 SINE MIR 72 201 -7 644 214 26 13 chr6 157946135 157946289 -31333265 + MIR SINE MIR 106 261 -1 489 151 54 11 chr6 157946446 157946486 -31333068 + L1MA2 LINE L1 6206 6243 -61 1540 76 35 0 chr6 157946486 157946711 -31332843 + AluSg/x SINE Alu 82 313 0 489 151 54 11 chr6 157946711 157946762 -31332792 + L1MA2 LINE L1 6243 6302 -2 1855 158 0 23 chr6 157946889 157947193 -31332361 + AluJo SINE Alu 3 299 -13 456 179 28 57 chr6 157948322 157948428 -31331126 + MLT1A1 LTR MaLR 1 103 -262 1210 180 47 16 chr6 157948851 157949106 -31330448 + MLT1A1 LTR MaLR 103 365 0 330 323 0 0 chr6 157949501 157949600 -31329954 + MER94 DNA DNA 35 133 -1 1959 180 39 48 chr6 157949910 157949988 -31329566 + MLT2A2 LTR ERVL 1 78 -476 2332 122 73 14 chr6 157949988 157950332 -31329222 - THE1B LTR MaLR 0 364 1 1959 180 39 48 chr6 157950332 157950804 -31328750 + MLT2A2 LTR ERVL 78 554 0 445 306 48 0 chr6 157951385 157951509 -31328045 + L3b LINE CR1 1380 1509 -74 236 239 272 0 chr6 157952077 157952169 -31327385 - L2 LINE L2 -5 3267 3151 3789 192 76 32 chr6 157952179 157952468 -31327086 - MER69 DNA AcHobo 0 2526 2251 2228 94 0 3 chr6 157952468 157952766 -31326788 - AluSc SINE Alu -12 297 1 3789 192 76 32 chr6 157952766 157953502 -31326052 - MER69 DNA AcHobo -275 2251 1456 2072 207 93 24 chr6 157953688 157953763 -31325791 - L1ME2 LINE L1 -2 6162 6094 2285 94 0 3 chr6 157953763 157954060 -31325494 + AluSg SINE Alu 1 296 -14 2072 207 93 24 chr6 157954060 157954530 -31325024 - L1ME2 LINE L1 -70 6094 5579 367 332 78 86 chr6 157954720 157955106 -31324448 + L2 LINE L2 2890 3272 0 319 236 11 11 chr6 157956156 157956245 -31323309 - MER103 DNA DNA -75 91 3 684 275 54 75 chr6 157956598 157956878 -31322676 - MLT1H1 LTR MaLR -281 274 1 1580 221 0 16 chr6 157957081 157957388 -31322166 + AluJb SINE Alu 1 302 -10 1155 216 14 0 chr6 157957432 157957650 -31321904 + MER58A DNA MER1_type 2 222 -2 2590 218 50 25 chr6 157957823 157958355 -31321199 - L1ME LINE L1 -442 5724 5207 2131 135 0 10 chr6 157958355 157958667 -31320887 + AluSg SINE Alu 1 309 -1 2590 218 50 25 chr6 157958667 157958712 -31320842 - L1ME LINE L1 -959 5207 5165 2264 119 6 0 chr6 157958712 157959023 -31320531 - AluSq SINE Alu 0 313 1 2590 218 50 25 chr6 157959023 157959073 -31320481 - L1ME LINE L1 -1001 5165 5118 1753 104 4 0 chr6 157959073 157959304 -31320250 + AluSg SINE Alu 46 277 -33 249 33 0 0 chr6 157959304 157959334 -31320220 + (CA)n Simple_repeat Simple_repeat 1 30 0 2590 218 50 25 chr6 157959334 157959784 -31319770 - L1ME LINE L1 -1047 5119 4621 843 323 69 10 chr6 157959809 157960139 -31319415 + LTR16C LTR ERVL 60 418 -73 2822 99 0 0 chr6 157960139 157960492 -31319062 - THE1A LTR MaLR -2 353 1 843 323 69 10 chr6 157960492 157960551 -31319003 + LTR16C LTR ERVL 418 472 -19 1018 326 32 46 chr6 157960633 157961280 -31318274 + ERVL LTR ERVL 1999 2636 -3128 21 36 0 0 chr6 157961297 157961325 -31318229 + AT_rich Low_complexity Low_complexity 1 28 0 484 238 56 16 chr6 157961325 157961451 -31318103 + LTR16C LTR ERVL 361 491 0 21 0 0 0 chr6 157961483 157961504 -31318050 + AT_rich Low_complexity Low_complexity 1 21 0 5302 97 7 9 chr6 157961555 157962363 -31317191 + L1PB2 LINE L1 5345 6151 0 475 295 105 32 chr6 157962786 157963311 -31316243 + L1M4 LINE L1 2268 2830 -3316 2862 18 3 0 chr6 157963361 157963691 -31315863 - L1PA4 LINE L1 -4 6151 5821 920 7 0 96 chr6 157963691 157963794 -31315760 + L1P LINE L1 4538 4627 -1519 2737 3 0 0 chr6 157963794 157964090 -31315464 - AluYa5 SINE Alu -15 296 1 920 7 0 96 chr6 157964090 157964121 -31315433 + L1P LINE L1 4627 4659 -1487 347 214 133 0 chr6 157964127 157964225 -31315329 + L1M4 LINE L1 2877 2987 -3159 * 526 309 38 11 chr6 157964224 157964486 -31315068 + L1ME3A LINE L1 5616 5884 -286 813 285 85 10 chr6 157964708 157965293 -31314261 + MER115 DNA AcHobo 5 680 -13 570 324 163 21 chr6 157965451 157965929 -31313625 - L2 LINE L2 -456 2858 2313 23 0 0 0 chr6 157966004 157966027 -31313527 + AT_rich Low_complexity Low_complexity 1 23 0 12028 98 193 2 chr6 157966217 157968517 -31311037 + L1P3 LINE L1 2707 5473 -699 959 81 0 0 chr6 157968516 157968652 -31310902 - L1P2 LINE L1 -625 5529 5394 * 28446 82 6 14 chr6 157968629 157972780 -31306774 - L1P2 LINE L1 -2026 4120 4 348 266 52 7 chr6 157972854 157973008 -31306546 - MLT1J2 LTR MaLR -283 167 7 1259 286 48 33 chr6 157973546 157974066 -31305488 + MLT1K LTR MaLR 53 580 -8 347 200 100 0 chr6 157975383 157975473 -31304081 + MIR SINE MIR 98 196 -66 189 74 0 0 chr6 157975892 157975919 -31303635 + (CA)n Simple_repeat Simple_repeat 2 28 0 1730 141 0 69 chr6 157977768 157978097 -31301457 - AluSx SINE Alu 0 308 1 271 371 16 0 chr6 157978249 157978373 -31301181 + Charlie8 DNA MER1_type 140 265 -2152 1995 162 0 13 chr6 157978550 157978865 -31300689 - AluSx SINE Alu -1 311 1 1512 174 25 12 chr6 157978941 157979287 -31300267 + MLT2C1 LTR ERVL 1 395 -2 200 365 22 67 chr6 157979617 157979795 -31299759 + L2 LINE L2 2942 3111 -161 790 271 70 65 chr6 157979899 157980298 -31299256 + MLT1J LTR MaLR 1 401 -110 395 288 115 62 chr6 157981325 157981776 -31297778 + L1ME4a LINE L1 4861 5335 -811 7729 82 3 3 chr6 157981804 157982972 -31296582 + L1P LINE L1 4261 5429 -743 25176 112 14 16 chr6 157982981 157987100 -31292454 + L1PA8 LINE L1 11 4120 -2026 5520 75 14 0 chr6 157987077 157987840 -31291714 + L1PA8 LINE L1 5394 6167 -5 * 911 47 7 2 chr6 157987829 157987865 -31291689 + L1P LINE L1 4498 4532 -1614 * 2795 19 3 0 chr6 157987865 157988186 -31291368 - L1PA4 LINE L1 -13 6142 5821 911 47 7 2 chr6 157988186 157988292 -31291262 + L1P LINE L1 4532 4643 -1503 5685 65 6 0 chr6 157988399 157989208 -31290346 - L1PA6 LINE L1 -143 6011 5199 604 200 143 43 chr6 157989214 157989444 -31290110 - MLT1C LTR MaLR -156 311 59 2253 91 0 3 chr6 157989579 157989922 -31289632 + AluY SINE Alu 1 342 0 309 294 10 0 chr6 157990053 157990155 -31289399 + L1ME4a LINE L1 5623 5725 -2083 265 281 131 39 chr6 157990231 157990537 -31289017 + L1ME4a LINE L1 5788 6121 0 21 0 0 0 chr6 157990545 157990566 -31288988 + AT_rich Low_complexity Low_complexity 1 21 0 227 275 125 0 chr6 157990838 157990918 -31288636 + MIR SINE MIR 31 120 -142 1565 254 101 50 chr6 157991087 157991335 -31288219 + MER20B DNA MER1_type 1 235 -548 2199 117 0 0 chr6 157991335 157991634 -31287920 + AluSc SINE Alu 1 299 -10 1565 254 101 50 chr6 157991634 157991752 -31287802 + MER20B DNA MER1_type 235 346 -437 1328 43 0 0 chr6 157991752 157991914 -31287640 - L1PA4 LINE L1 -1 6154 5993 1565 254 101 50 chr6 157991914 157991968 -31287586 + MER20B DNA MER1_type 346 396 -387 306 105 66 26 chr6 157991968 157992044 -31287510 + L1MA4A LINE L1 6225 6303 0 1565 254 101 50 chr6 157992044 157992337 -31287217 + MER20B DNA MER1_type 396 752 -31 2465 88 41 0 chr6 157992409 157992750 -31286804 - THE1A LTR MaLR 0 355 1 270 48 24 0 chr6 157993981 157994023 -31285531 + MADE1 DNA Mariner 4 46 -34 33 0 0 0 chr6 157994150 157994183 -31285371 + AT_rich Low_complexity Low_complexity 1 33 0 707 286 107 58 chr6 157994192 157994732 -31284822 - L2 LINE L2 -54 3218 2653 2386 88 0 23 chr6 157995824 157996131 -31283423 + AluSx SINE Alu 1 300 -12 241 248 248 0 chr6 157997465 157997574 -31281980 - MIR SINE MIR -48 214 79 1927 138 0 0 chr6 157998751 157999055 -31280499 + AluSx SINE Alu 1 304 0 1607 104 4 13 chr6 157999155 157999386 -31280168 - MER30 DNA MER1_type -1 229 1 22 0 0 0 chr6 158000184 158000206 -31279348 + AT_rich Low_complexity Low_complexity 1 22 0 244 200 0 18 chr6 158000539 158000594 -31278960 + L1MD3 LINE L1 7913 7966 -29 207 256 0 0 chr6 158001408 158001451 -31278103 + MIR SINE MIR 217 259 -3 191 294 88 15 chr6 158001683 158001751 -31277803 - MIR SINE MIR -65 143 71 27 0 0 0 chr6 158002220 158002247 -31277307 + AT_rich Low_complexity Low_complexity 1 27 0 22 70 0 0 chr6 158002329 158002372 -31277182 + AT_rich Low_complexity Low_complexity 1 43 0 2372 93 0 6 chr6 158002549 158002862 -31276692 - AluSx SINE Alu -1 311 1 243 232 10 10 chr6 158003240 158003339 -31276215 - L1MA7 LINE L1 -1 6290 6192 384 228 10 10 chr6 158004787 158004888 -31274666 + L1MEc LINE L1 360 460 -6261 324 284 127 67 chr6 158004928 158004994 -31274560 + L1MEc LINE L1 1454 1515 -5025 2095 152 33 28 chr6 158004994 158005356 -31274198 - THE1B LTR MaLR 0 364 1 324 284 127 67 chr6 158005356 158005557 -31273997 + L1MEc LINE L1 1515 1737 -4803 540 103 0 0 chr6 158005563 158005650 -31273904 - AluJ/FRAM SINE Alu 0 312 226 528 227 104 64 chr6 158005677 158006034 -31273520 + L1MEc LINE L1 1891 2261 -4460 1693 154 18 6 chr6 158006034 158006365 -31273189 - MER46B DNA MER2_type 0 236 27 1335 272 45 7 chr6 158006365 158006920 -31272634 + L1MEc LINE L1 2272 2847 -3874 251 299 0 26 chr6 158006976 158007053 -31272501 + MIR SINE MIR 72 146 -62 1555 240 52 44 chr6 158007160 158007519 -31272035 - L1MC4a LINE L1 -2 7806 7439 2032 131 7 0 chr6 158007519 158007810 -31271744 - AluSx SINE Alu -19 293 1 1555 240 52 44 chr6 158007810 158008024 -31271530 - L1MC4a LINE L1 -369 7439 7228 320 190 13 0 chr6 158008077 158008156 -31271398 + GA-rich Low_complexity Low_complexity 2 81 0 704 207 0 71 chr6 158008323 158008492 -31271062 + FRAM SINE Alu 1 156 -20 21 0 0 0 chr6 158009318 158009339 -31270215 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr6 158009381 158009407 -31270147 + AT_rich Low_complexity Low_complexity 1 26 0 205 162 37 66 chr6 158009568 158009704 -31269850 + (TTATA)n Simple_repeat Simple_repeat 3 134 0 227 217 0 0 chr6 158009779 158009839 -31269715 - L1ME LINE L1 -295 5826 5767 25 31 0 0 chr6 158009839 158009871 -31269683 + AT_rich Low_complexity Low_complexity 1 32 0 1123 198 0 15 chr6 158009917 158010114 -31269440 + AluJb SINE Alu 83 276 -36 2549 107 19 0 chr6 158010492 158010857 -31268697 - THE1C LTR MaLR 0 375 4 3081 177 157 96 chr6 158011089 158011663 -31267891 - L1MC3 LINE L1 -2 7783 7245 253 208 0 104 chr6 158011663 158011759 -31267795 - MLT1F1 LTR MaLR -439 128 43 3081 177 157 96 chr6 158011759 158012116 -31267438 - L1MC3 LINE L1 -540 7245 6695 194 277 43 0 chr6 158012203 158012250 -31267304 - L3b LINE CR1 -237 1346 1298 23 0 0 0 chr6 158013088 158013111 -31266443 + AT_rich Low_complexity Low_complexity 1 23 0 1050 223 4 14 chr6 158014347 158014625 -31264929 + L1MC3 LINE L1 7505 7779 -6 1703 190 45 8 chr6 158014800 158015152 -31264402 - MLT1A1 LTR MaLR 0 365 1 244 284 56 99 chr6 158015419 158015581 -31263973 - MIR3 SINE MIR -9 199 45 2177 127 22 22 chr6 158015585 158015946 -31263608 - THE1B LTR MaLR -1 363 3 23 0 0 0 chr6 158016213 158016236 -31263318 + AT_rich Low_complexity Low_complexity 1 23 0 501 239 66 82 chr6 158017204 158017509 -31262045 - L1MC4a LINE L1 -89 6101 5800 341 259 76 30 chr6 158017730 158017861 -31261693 - L1MC4a LINE L1 -2381 5496 5360 476 288 194 61 chr6 158018026 158018876 -31260678 - L1MC4a LINE L1 -1098 5117 4155 21744 76 9 3 chr6 158018879 158022666 -31256888 - L1PA6 LINE L1 -3 6151 2347 731 93 0 0 chr6 158022687 158022794 -31256760 + L1PA6 LINE L1 6046 6152 -2 11661 144 14 74 chr6 158022795 158025291 -31254263 - L1PA6 LINE L1 -3789 2357 11 397 337 78 22 chr6 158025328 158025697 -31253857 - L1MC4a LINE L1 -2063 4152 3721 21 36 0 0 chr6 158025899 158025927 -31253627 + AT_rich Low_complexity Low_complexity 1 28 0 306 292 136 35 chr6 158025958 158026215 -31253339 - L1MC4a LINE L1 -2812 3403 3121 771 300 35 46 chr6 158026927 158027694 -31251860 - L1MC4a LINE L1 -4576 1820 1062 414 234 74 62 chr6 158027702 158027834 -31251720 - L1MD3 LINE L1 0 8040 7911 423 0 0 0 chr6 158027834 158027881 -31251673 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 414 234 74 62 chr6 158027881 158028072 -31251482 - L1MD3 LINE L1 -129 7911 7735 564 261 75 37 chr6 158028088 158028512 -31251042 - L1MC4a LINE L1 -1012 6796 6458 330 339 97 15 chr6 158029038 158029233 -31250321 - L1MC4a LINE L1 -5400 996 786 21 0 0 0 chr6 158030241 158030262 -31249292 + AT_rich Low_complexity Low_complexity 1 21 0 338 315 18 9 chr6 158030649 158030760 -31248794 - L2 LINE L2 -34 3279 3168 770 168 94 21 chr6 158032140 158032434 -31247120 + L1MC2 LINE L1 1547 1942 -4484 2199 107 0 31 chr6 158032449 158032768 -31246786 - AluSc SINE Alu 0 309 1 9954 219 34 25 chr6 158032768 158033871 -31245683 + L1MC2 LINE L1 2077 3169 -3455 5981 95 19 0 chr6 158033871 158034611 -31244943 - L1PA10 LINE L1 -17 6151 5410 1849 164 29 0 chr6 158034611 158034891 -31244663 - AluSx SINE Alu -22 290 3 5981 95 19 0 chr6 158034891 158035287 -31244267 - L1PA10 LINE L1 -758 5410 5023 9954 219 34 25 chr6 158035287 158038688 -31240866 + L1MC2 LINE L1 3169 6612 -12 3495 139 46 33 chr6 158038750 158039633 -31239921 - MER52C LTR ERV1 0 1278 253 506 249 13 29 chr6 158039634 158039770 -31239784 + MIR3 SINE MIR 67 201 -7 735 249 75 9 chr6 158040308 158040521 -31239033 + MIR SINE MIR 36 262 0 2185 128 0 25 chr6 158040587 158040907 -31238647 - AluSx SINE Alu 0 312 1 2165 127 0 3 chr6 158040939 158041247 -31238307 + AluSx SINE Alu 1 307 -5 2182 104 0 20 chr6 158041252 158041551 -31238003 + AluSc SINE Alu 5 297 -12 418 328 40 60 chr6 158043001 158043251 -31236303 - L2 LINE L2 -470 2844 2600 938 223 5 0 chr6 158043377 158043583 -31235971 - MLT1C LTR MaLR 0 467 261 330 200 10 20 chr6 158043601 158043701 -31235853 + CT-rich Low_complexity Low_complexity 1 99 0 1037 161 21 10 chr6 158043702 158043745 -31235809 - MLT1C LTR MaLR -162 228 187 1485 204 3 45 chr6 158043745 158044053 -31235501 - AluJb SINE Alu -17 295 1 1037 161 21 10 chr6 158044053 158044235 -31235319 - MLT1C LTR MaLR -203 187 1 319 299 103 29 chr6 158044241 158044415 -31235139 + MLT1J LTR MaLR 47 233 -278 604 222 120 0 chr6 158045023 158045190 -31234364 - MLT1C LTR MaLR -189 278 92 248 200 27 0 chr6 158045933 158046008 -31233546 + A-rich Low_complexity Low_complexity 2 78 0 2368 132 8 6 chr6 158047004 158047367 -31232187 + THE1B LTR MaLR 1 364 0 2282 112 3 10 chr6 158048093 158048407 -31231147 + AluSx SINE Alu 1 312 0 947 149 89 78 chr6 158048563 158048845 -31230709 + LTR12 LTR ERV1 1 285 -429 312 216 34 0 chr6 158048846 158048934 -31230620 + LTR30 LTR ERV1 553 643 -79 605 150 0 0 chr6 158048936 158049036 -31230518 + LTR12 LTR ERV1 615 714 0 302 304 135 66 chr6 158049928 158050415 -31229139 + L1M2 LINE L1 745 1274 -5575 300 36 36 18 chr6 158050415 158050470 -31229084 + (CCCCCG)n Simple_repeat Simple_repeat 4 59 0 302 304 135 66 chr6 158050470 158050524 -31229030 + L1M2 LINE L1 1274 1323 -5526 339 25 0 0 chr6 158050742 158050782 -31228772 + (TG)n Simple_repeat Simple_repeat 1 40 0 303 237 218 0 chr6 158051884 158052040 -31227514 + Charlie2a DNA MER1_type 1 190 -2592 752 205 29 0 chr6 158052151 158052322 -31227232 + Charlie2a DNA MER1_type 1484 1659 -1203 292 195 85 51 chr6 158052341 158052459 -31227095 + Charlie2a DNA MER1_type 2724 2845 -17 1965 198 39 49 chr6 158053711 158054221 -31225333 + MLT1D LTR MaLR 1 505 0 1545 181 40 83 chr6 158054442 158054912 -31224642 - LTR7 LTR ERV1 0 450 1 582 266 146 0 chr6 158055670 158055828 -31223726 + MER5A DNA MER1_type 9 189 0 2218 111 14 0 chr6 158055909 158056206 -31223348 - AluSx SINE Alu -11 301 1 1738 169 14 0 chr6 158056525 158056820 -31222734 + AluJo SINE Alu 5 303 -9 230 302 47 0 chr6 158057038 158057124 -31222430 - L2 LINE L2 -311 2961 2872 22 0 0 0 chr6 158058220 158058242 -31221312 + AT_rich Low_complexity Low_complexity 1 22 0 2126 132 0 7 chr6 158058640 158058950 -31220604 - AluSx SINE Alu -4 308 1 679 223 86 33 chr6 158059033 158059465 -31220089 - L1MC/D LINE L1 -667 5969 5512 1798 207 55 8 chr6 158059472 158060091 -31219463 - L1MC/D LINE L1 -1102 5438 4752 1766 167 58 40 chr6 158060105 158060483 -31219071 - MSTD LTR MaLR -2 394 10 3558 168 23 92 chr6 158060519 158061290 -31218264 - L1MD1 LINE L1 -22 6220 5398 186 43 0 0 chr6 158061290 158061313 -31218241 + (TGG)n Simple_repeat Simple_repeat 3 25 0 3558 168 23 92 chr6 158061313 158061385 -31218169 - L1MD1 LINE L1 -844 5398 5444 1660 194 0 25 chr6 158061385 158061412 -31218142 - AluJo SINE Alu -5 307 281 213 39 0 0 chr6 158061412 158061438 -31218116 + (TG)n Simple_repeat Simple_repeat 1 26 0 1660 194 0 25 chr6 158061438 158061725 -31217829 - AluJo SINE Alu -31 281 1 3558 168 23 92 chr6 158061725 158061819 -31217735 - L1MD1 LINE L1 -797 5445 5346 1222 224 34 81 chr6 158061820 158062351 -31217203 - L1MC/D LINE L1 -1760 4780 4275 3689 196 17 29 chr6 158062355 158063252 -31216302 - L1MA8 LINE L1 -1 6290 5415 2110 152 56 0 chr6 158063252 158063626 -31215928 - MSTA LTR MaLR -33 395 1 2692 210 24 13 chr6 158063627 158064308 -31215246 - L1MA8 LINE L1 -743 5403 4716 * 3641 244 88 22 chr6 158064306 158064946 -31214608 - L1M2 LINE L1 -2300 4240 3644 1666 174 48 7 chr6 158064946 158065239 -31214315 - AluJb SINE Alu -7 305 1 3641 244 88 22 chr6 158065239 158066307 -31213247 - L1M2 LINE L1 -2896 3644 2648 2298 98 3 0 chr6 158066307 158066604 -31212950 - AluY SINE Alu -13 298 1 3641 244 88 22 chr6 158066604 158067456 -31212098 - L1M2 LINE L1 -3892 2648 1562 1204 273 9 28 chr6 158067601 158068095 -31211459 - L1MDb LINE L1 -4992 1417 932 2312 99 39 33 chr6 158068095 158068457 -31211097 - THE1B LTR MaLR 0 364 1 1204 273 9 28 chr6 158068457 158068493 -31211061 - L1MDb LINE L1 -5477 932 897 180 0 0 0 chr6 158068736 158068756 -31210798 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 272 269 11 11 chr6 158069104 158069197 -31210357 - L1MDb LINE L1 -5954 442 350 285 188 24 12 chr6 158069236 158069321 -31210233 - L1ME4a LINE L1 -233 5888 5803 293 206 0 0 chr6 158069351 158069414 -31210140 - L1ME4a LINE L1 -419 5702 5640 180 0 0 0 chr6 158069414 158069434 -31210120 + (T)n Simple_repeat Simple_repeat 1 20 0 2087 98 9 12 chr6 158069434 158069761 -31209793 - LTR17 LTR ERV1 -454 326 1 2319 44 0 3 chr6 158069761 158070054 -31209500 - HERV17 LTR ERV1 0 8626 8335 279 77 0 0 chr6 158070044 158070083 -31209471 - HERV17 LTR ERV1 -1078 7548 7510 * 36501 52 8 10 chr6 158070079 158071584 -31207970 - HERV17 LTR ERV1 -1479 7147 5640 195 42 0 0 chr6 158071584 158071608 -31207946 + (TTTCC)n Simple_repeat Simple_repeat 2 25 0 36501 52 8 10 chr6 158071608 158074831 -31204723 - HERV17 LTR ERV1 -2986 5640 2430 13736 89 10 14 chr6 158074816 158076823 -31202731 - HERV17 LTR ERV1 -6612 2014 17 * 3251 114 45 4 chr6 158076839 158077346 -31202208 - LTR17 LTR ERV1 0 780 253 340 271 57 45 chr6 158078036 158078213 -31201341 - LTR33 LTR ERVL 0 521 343 2150 121 7 0 chr6 158078563 158078861 -31200693 + AluSx SINE Alu 2 301 -11 681 256 18 98 chr6 158078958 158079167 -31200387 + MIR SINE MIR 5 188 -74 2229 169 51 0 chr6 158079167 158079576 -31199978 - MSTB1 LTR MaLR -2 430 1 681 256 18 98 chr6 158079576 158079643 -31199911 + MIR SINE MIR 188 259 -3 404 277 51 51 chr6 158079756 158079893 -31199661 + MIR SINE MIR 8 144 -118 326 107 18 0 chr6 158079902 158079958 -31199596 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 5267 131 12 1 chr6 158080121 158080978 -31198576 - Tigger1 DNA MER2_type -1 2417 1552 24 0 0 0 chr6 158081610 158081634 -31197920 + AT_rich Low_complexity Low_complexity 1 24 0 8821 108 52 36 chr6 158081642 158081738 -31197816 - Tigger1 DNA MER2_type -852 1566 1473 1693 175 0 45 chr6 158081738 158082052 -31197502 - AluJo SINE Alu -12 300 1 8821 108 52 36 chr6 158082052 158082401 -31197153 - Tigger1 DNA MER2_type -945 1473 1131 1715 195 0 3 chr6 158082401 158082698 -31196856 + AluJo SINE Alu 1 296 -16 8821 108 52 36 chr6 158082698 158083740 -31195814 - Tigger1 DNA MER2_type -1287 1131 54 356 315 80 98 chr6 158084672 158085455 -31194099 + HAL1b LINE L1 445 686 -662 2389 93 0 3 chr6 158085529 158085839 -31193715 - AluSc SINE Alu 0 309 1 3014 294 68 59 chr6 158086919 158088383 -31191171 + L2 LINE L2 957 2433 -881 2290 102 3 0 chr6 158090315 158090618 -31188936 - AluSx SINE Alu -8 304 1 1183 117 0 6 chr6 158091268 158091448 -31188106 + L1PB1 LINE L1 5972 6150 -1 688 226 7 14 chr6 158091502 158091648 -31187906 + MER5B DNA MER1_type 31 175 -3 21 0 0 0 chr6 158091757 158091778 -31187776 + AT_rich Low_complexity Low_complexity 1 21 0 336 108 39 39 chr6 158092091 158092221 -31187333 + (TATAA)n Simple_repeat Simple_repeat 5 134 0 299 352 96 0 chr6 158092731 158092856 -31186698 - L2 LINE L2 0 3272 3136 2590 11 0 0 chr6 158093130 158093413 -31186141 - AluYa5 SINE Alu -1 310 28 1702 154 24 24 chr6 158094263 158094556 -31184998 + AluJo SINE Alu 14 306 -6 264 375 54 0 chr6 158095596 158095624 -31183930 + L2 LINE L2 3088 3113 -159 2512 159 56 11 chr6 158095624 158096071 -31183483 + MLT1C LTR MaLR 1 467 0 264 375 54 0 chr6 158096071 158096210 -31183344 + L2 LINE L2 3113 3264 -8 1512 192 87 26 chr6 158096353 158096697 -31182857 - MLT1A1 LTR MaLR 0 365 1 180 176 20 98 chr6 158098151 158098202 -31181352 - MER5A DNA MER1_type -75 114 68 1745 256 70 53 chr6 158098503 158100132 -31179422 - L1ME3 LINE L1 -43 6119 4456 863 338 149 31 chr6 158100775 158101885 -31177669 + L2 LINE L2 1731 2970 -344 326 390 32 0 chr6 158102114 158102237 -31177317 - L2 LINE L2 -44 3228 3102 938 157 0 70 chr6 158102676 158102861 -31176693 + AluJb SINE Alu 138 309 -3 2327 96 0 0 chr6 158102956 158103258 -31176296 + AluSg SINE Alu 1 302 -8 2399 78 0 0 chr6 158103411 158103707 -31175847 - AluY SINE Alu -15 296 1 381 327 27 13 chr6 158104465 158104615 -31174939 + MIR SINE MIR 108 259 -3 324 307 94 22 chr6 158104621 158104940 -31174614 - L1ME4a LINE L1 -232 5889 5548 363 347 27 0 chr6 158105214 158105361 -31174193 + MIR SINE MIR 90 240 -22 358 340 40 0 chr6 158105609 158105709 -31173845 - L2 LINE L2 -27 3245 3142 398 171 295 9 chr6 158106033 158106138 -31173416 - L2 LINE L2 0 3313 3179 768 138 33 13 chr6 158106243 158106395 -31173159 - LTR32 LTR ERVL 0 471 317 1771 148 33 15 chr6 158106402 158106734 -31172820 - LTR32 LTR ERVL -119 352 15 1211 265 159 19 chr6 158106859 158107426 -31172128 - L2 LINE L2 -558 2756 2111 2096 88 4 4 chr6 158107835 158108107 -31171447 + AluSc SINE Alu 24 295 -14 1847 163 0 0 chr6 158108497 158108774 -31170780 - AluJb SINE Alu -2 310 34 2292 102 0 13 chr6 158109562 158109867 -31169687 - AluSp SINE Alu -12 301 1 2661 96 3 8 chr6 158109976 158110342 -31169212 - THE1B LTR MaLR 0 364 1 3550 104 22 4 chr6 158110407 158110909 -31168645 + MER9 LTR ERVK 1 511 0 214 160 40 20 chr6 158111103 158111153 -31168401 + CT-rich Low_complexity Low_complexity 3 53 0 187 304 22 0 chr6 158112853 158112899 -31166655 - L2 LINE L2 -33 3239 3193 504 317 57 32 chr6 158113136 158113382 -31166172 - L1ME3A LINE L1 -223 5947 5696 391 267 50 25 chr6 158113760 158113921 -31165633 + LTR41 LTR ERVL 24 188 -585 2081 113 38 30 chr6 158114225 158114597 -31164957 - THE1C LTR MaLR 0 375 1 195 164 14 27 chr6 158116455 158116528 -31163026 + (TA)n Simple_repeat Simple_repeat 1 72 0 2125 151 0 0 chr6 158117322 158117621 -31161933 - AluSx SINE Alu -13 299 1 2426 94 0 0 chr6 158118643 158118952 -31160602 + AluY SINE Alu 1 309 -2 464 217 22 0 chr6 158119415 158119553 -31160001 - L1MEc LINE L1 -3639 2576 2436 2148 122 3 0 chr6 158119567 158119862 -31159692 - AluSc SINE Alu -13 296 1 2102 130 0 13 chr6 158120068 158120368 -31159186 + AluSg SINE Alu 1 296 -14 1633 93 8 20 chr6 158120368 158120605 -31158949 - L1PA13 LINE L1 -19 6144 5909 578 239 87 15 chr6 158120608 158120947 -31158607 - L1MEc LINE L1 -3786 2429 2094 1902 246 67 12 chr6 158120965 158121547 -31158007 + MLT1E2 LTR MaLR 13 626 0 997 214 87 57 chr6 158121562 158121987 -31157567 - L1MEc LINE L1 -4315 2081 1644 972 293 70 38 chr6 158122017 158123056 -31156498 - L1MEc LINE L1 -4825 1571 499 285 252 118 8 chr6 158123068 158123250 -31156304 + MLT1E1 LTR MaLR 1 265 -389 250 245 32 11 chr6 158123274 158123368 -31156186 - L1MEc LINE L1 -6250 146 51 506 275 98 18 chr6 158124077 158124295 -31155259 - L1ME LINE L1 -344 5818 5619 2079 168 6 0 chr6 158124295 158124658 -31154896 + MER47A DNA MER2_type 2 366 0 506 275 98 18 chr6 158124658 158124859 -31154695 - L1ME LINE L1 -543 5619 5369 1974 150 31 24 chr6 158126725 158127106 -31152448 - MLT1B LTR MaLR -2 388 5 245 186 29 29 chr6 158128065 158128135 -31151419 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 2401 87 0 0 chr6 158128245 158128545 -31151009 + AluY SINE Alu 1 300 -11 2753 80 11 3 chr6 158129589 158129950 -31149604 - THE1B LTR MaLR 0 364 1 33 0 0 0 chr6 158131557 158131590 -31147964 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr6 158131678 158131707 -31147847 + AT_rich Low_complexity Low_complexity 1 29 0 1242 221 37 27 chr6 158131708 158132006 -31147548 - AluJo SINE Alu -11 301 1 2050 63 0 20 chr6 158132905 158133158 -31146396 + AluY SINE Alu 59 306 -5 279 0 0 0 chr6 158133158 158133189 -31146365 + (TA)n Simple_repeat Simple_repeat 2 32 0 194 314 47 142 chr6 158133926 158134200 -31145354 - L2 LINE L2 -30 3242 2995 763 296 115 13 chr6 158134251 158134555 -31144999 + L2 LINE L2 2972 3306 -7 1899 159 3 0 chr6 158134668 158134957 -31144597 - AluJb SINE Alu -22 290 1 444 257 40 97 chr6 158134983 158135333 -31144221 - MLT1L LTR MaLR -166 449 120 248 158 18 0 chr6 158136146 158136203 -31143351 + CT-rich Low_complexity Low_complexity 1 58 0 203 191 71 0 chr6 158137506 158137548 -31142006 - L2 LINE L2 -18 3254 3210 * 426 263 20 116 chr6 158137515 158137766 -31141788 - MIR SINE MIR -24 238 12 1459 176 50 93 chr6 158137766 158137852 -31141702 + MER7A DNA MER2_type 1 89 -2949 1833 164 0 26 chr6 158137852 158138164 -31141390 + AluJb SINE Alu 1 304 -8 1459 176 50 93 chr6 158138164 158138177 -31141377 + MER7A DNA MER2_type 89 101 -2937 1496 205 30 7 chr6 158138177 158138479 -31141075 + AluJo SINE Alu 1 309 -3 1459 176 50 93 chr6 158138479 158138742 -31140812 + MER7A DNA MER2_type 101 346 0 2427 73 0 22 chr6 158138878 158139195 -31140359 + AluY SINE Alu 1 310 -1 252 221 0 15 chr6 158142981 158143049 -31136505 - AluS SINE Alu -3 297 231 439 306 210 15 chr6 158144285 158144556 -31134998 + L2 LINE L2 2949 3272 0 484 247 135 17 chr6 158144617 158144795 -31134759 - MIR SINE MIR -32 230 32 1314 246 103 8 chr6 158145572 158146079 -31133475 + Zaphod DNA AcHobo 307 861 -3170 2776 32 0 18 chr6 158146131 158146470 -31133084 - L1PA4 LINE L1 0 6155 5823 1266 177 19 5 chr6 158146488 158146697 -31132857 + AluJb SINE Alu 84 295 -17 434 168 20 10 chr6 158146786 158146887 -31132667 + Zaphod DNA AcHobo 3596 3697 -334 33 25 0 0 chr6 158146887 158146927 -31132627 + AT_rich Low_complexity Low_complexity 1 40 0 377 188 31 0 chr6 158146963 158147059 -31132495 + Zaphod DNA AcHobo 3856 3954 -77 1944 150 14 6 chr6 158147190 158147556 -31131998 - L1MA5 LINE L1 -2 6298 5930 4233 156 42 60 chr6 158147557 158148292 -31131262 - L1 LINE L1 -2063 5145 4393 272 95 0 0 chr6 158148292 158148334 -31131220 - tRNA-Cys-TGC tRNA tRNA -32 43 2 4233 156 42 60 chr6 158148334 158148637 -31130917 - L1 LINE L1 -2815 4393 4086 527 53 13 0 chr6 158148686 158148762 -31130792 + L1PB1 LINE L1 6073 6149 -2 1342 119 16 25 chr6 158148862 158149622 -31129932 - L1PBa LINE L1 -5326 1537 636 1022 151 31 0 chr6 158149624 158149816 -31129738 - L1PBa LINE L1 -6663 200 3 2505 219 31 15 chr6 158149832 158150513 -31129041 - L1 LINE L1 -4809 2400 1709 389 287 129 59 chr6 158150550 158150836 -31128718 - L1 LINE L1 -5611 1598 1293 1334 232 117 12 chr6 158150839 158151266 -31128288 - L1 LINE L1 -6431 778 307 2112 164 5 63 chr6 158151885 158152313 -31127241 + MER57A LTR ERV1 1 403 0 21 57 0 0 chr6 158152438 158152473 -31127081 + AT_rich Low_complexity Low_complexity 1 35 0 241 342 91 21 chr6 158153590 158153833 -31125721 + L2 LINE L2 2619 2878 -436 898 226 71 26 chr6 158153887 158154197 -31125357 + MER33 DNA MER1_type 1 317 -7 299 319 44 9 chr6 158154212 158154325 -31125229 + L2 LINE L2 2934 3050 -222 189 246 116 43 chr6 158154530 158154599 -31124955 - L2 LINE L2 0 3272 3199 351 280 28 19 chr6 158154696 158154803 -31124751 - MIR SINE MIR -108 154 47 21 71 0 0 chr6 158155082 158155124 -31124430 + AT_rich Low_complexity Low_complexity 1 42 0 349 170 10 30 chr6 158155232 158155332 -31124222 - Charlie5 DNA MER1_type -94 2518 2421 222 152 25 76 chr6 158155340 158155419 -31124135 + (TATAA)n Simple_repeat Simple_repeat 1 75 0 189 0 0 0 chr6 158155945 158155966 -31123588 + (T)n Simple_repeat Simple_repeat 1 21 0 185 350 103 10 chr6 158156413 158156510 -31123044 - MIR SINE MIR -64 144 39 1528 100 17 17 chr6 158158640 158158870 -31120684 + MER30 DNA MER1_type 1 230 0 2150 98 3 20 chr6 158159207 158159504 -31120050 + AluSc SINE Alu 1 292 -17 23 0 0 0 chr6 158160077 158160100 -31119454 + AT_rich Low_complexity Low_complexity 1 23 0 251 347 108 42 chr6 158160339 158161012 -31118542 - L2 LINE L2 0 3272 2521 291 330 52 9 chr6 158161264 158161379 -31118175 - MIR SINE MIR -115 147 28 294 286 116 42 chr6 158161436 158161677 -31117877 - L2 LINE L2 -891 2423 2165 28 48 0 0 chr6 158161887 158161929 -31117625 + AT_rich Low_complexity Low_complexity 1 42 0 806 229 0 0 chr6 158162428 158162585 -31116969 - MER5A DNA MER1_type -32 157 1 328 287 76 32 chr6 158163145 158163302 -31116252 - MIR3 SINE MIR -41 167 4 344 368 23 17 chr6 158163645 158163819 -31115735 - MIR3 SINE MIR -31 177 3 259 300 0 0 chr6 158163926 158164006 -31115548 - MIR SINE MIR -1 261 182 210 297 0 0 chr6 158164136 158164200 -31115354 + MIR SINE MIR 183 246 -16 243 61 0 0 chr6 158164734 158164767 -31114787 + (CAA)n Simple_repeat Simple_repeat 2 34 0 547 292 43 0 chr6 158164831 158165016 -31114538 + L3 LINE CR1 1289 1481 -96 312 340 41 31 chr6 158165128 158165280 -31114274 + MIR SINE MIR 6 154 -70 762 238 174 44 chr6 158165296 158165640 -31113914 - L2 LINE L2 0 3313 2925 270 0 0 0 chr6 158166250 158166280 -31113274 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 884 178 0 0 chr6 158166282 158166428 -31113126 - FRAM SINE Alu -30 146 1 328 252 130 35 chr6 158166438 158166553 -31113001 - MIR SINE MIR -67 141 16 482 319 44 6 chr6 158167760 158167942 -31111612 + L1ME LINE L1 5492 5680 -441 2027 138 0 0 chr6 158167943 158168234 -31111320 + AluSx SINE Alu 1 291 -21 234 371 10 31 chr6 158168747 158168844 -31110710 + MIR3 SINE MIR 65 159 -49 326 330 0 0 chr6 158168992 158169095 -31110459 - MER117 DNA MER1_type -94 103 1 811 261 43 128 chr6 158169649 158169714 -31109840 - MLT1J LTR MaLR 0 511 442 1196 229 9 5 chr6 158169714 158169937 -31109617 + MER58A DNA MER1_type 1 224 0 811 261 43 128 chr6 158169937 158170427 -31109127 - MLT1J LTR MaLR -69 442 3 380 307 157 27 chr6 158170621 158171198 -31108356 - L2 LINE L2 0 3272 2623 568 269 28 7 chr6 158171326 158171487 -31108067 - MIR SINE MIR -62 146 16 27 0 0 0 chr6 158171866 158171893 -31107661 + AT_rich Low_complexity Low_complexity 1 27 0 2244 122 0 3 chr6 158171935 158172247 -31107307 + AluSx SINE Alu 1 311 -1 261 361 44 25 chr6 158172373 158172531 -31107023 + L2 LINE L2 3111 3271 -1 1151 152 37 55 chr6 158173591 158173808 -31105746 + MER20 DNA MER1_type 7 219 0 2174 131 0 0 chr6 158173883 158174180 -31105374 - AluSx SINE Alu -15 297 1 229 275 113 28 chr6 158174401 158174543 -31105011 + L2 LINE L2 3118 3271 -42 658 295 52 10 chr6 158174552 158174745 -31104809 + MIR SINE MIR 13 213 -49 336 220 12 116 chr6 158175415 158175452 -31104102 - L2 LINE L2 0 3313 3274 2841 97 16 3 chr6 158175452 158175822 -31103732 - THE1C LTR MaLR 0 375 1 336 220 12 116 chr6 158175822 158175957 -31103597 - L2 LINE L2 -39 3274 3159 2343 189 38 41 chr6 158176002 158176509 -31103045 - MLT1D LTR MaLR 0 505 1 234 0 0 0 chr6 158178245 158178271 -31101283 + (TG)n Simple_repeat Simple_repeat 2 27 0 192 294 15 15 chr6 158178951 158179019 -31100535 - L3 LINE CR1 -1188 389 322 201 316 94 76 chr6 158180959 158181109 -31098445 + L2 LINE L2 1473 1619 -1695 1679 176 102 130 chr6 158181109 158181677 -31097877 + MLT1H1 LTR MaLR 4 555 0 201 316 94 76 chr6 158181677 158181919 -31097635 + L2 LINE L2 1619 1872 -1442 * 446 328 65 58 chr6 158181917 158182210 -31097344 - L3 LINE CR1 -2 1575 1281 386 296 0 0 chr6 158182468 158182566 -31096988 + MIR SINE MIR 1 98 -164 335 272 95 4 chr6 158183677 158183849 -31095705 + MIR SINE MIR 1 259 -3 1133 154 13 0 chr6 158184421 158184577 -31094977 - FRAM SINE Alu -7 159 2 508 320 194 27 chr6 158184729 158185358 -31094196 - L2 LINE L2 -869 2445 1712 823 221 54 38 chr6 158186295 158186611 -31092943 - L1MC5 LINE L1 -36 7925 7605 580 249 92 81 chr6 158186854 158187211 -31092343 + MLT1J LTR MaLR 1 394 -117 302 189 0 0 chr6 158188080 158188133 -31091421 - MLT1J2 LTR MaLR -6 444 392 586 234 51 13 chr6 158188245 158188403 -31091151 - MLT1J2 LTR MaLR -255 195 32 414 0 0 0 chr6 158189522 158189568 -31089986 + (TG)n Simple_repeat Simple_repeat 2 47 0 255 341 53 38 chr6 158190547 158190679 -31088875 + L2 LINE L2 2750 2883 -431 2169 148 26 35 chr6 158191456 158191833 -31087721 + THE1C LTR MaLR 2 375 0 216 247 206 0 chr6 158192036 158192133 -31087421 + MIR SINE MIR 103 219 -43 226 200 20 0 chr6 158192359 158192409 -31087145 - MIR SINE MIR -2 260 210 327 343 119 5 chr6 158192809 158192993 -31086561 + MIR SINE MIR 3 205 -57 325 274 75 41 chr6 158193139 158193285 -31086269 + L2 LINE L2 3158 3308 -5 2245 113 0 3 chr6 158193296 158193596 -31085958 - AluSx SINE Alu -13 299 1 309 322 0 0 chr6 158194178 158194265 -31085289 + CT-rich Low_complexity Low_complexity 1 87 0 32 26 0 0 chr6 158194606 158194645 -31084909 + AT_rich Low_complexity Low_complexity 1 39 0 218 311 0 16 chr6 158194946 158195007 -31084547 + MER5B DNA MER1_type 61 120 -58 2006 186 11 11 chr6 158195733 158196098 -31083456 + MLT1A1 LTR MaLR 1 365 0 1414 140 3 137 chr6 158196538 158196881 -31082673 + AluJo SINE Alu 1 297 -15 207 204 0 0 chr6 158198913 158198957 -31080597 + (TTTAA)n Simple_repeat Simple_repeat 2 45 0 195 370 17 59 chr6 158199132 158199251 -31080303 - MIR3 SINE MIR -11 197 84 398 203 228 1 chr6 158200037 158200167 -31079387 - L1M2b LINE L1 -6710 499 57 2514 183 15 28 chr6 158200219 158200689 -31078865 + MER88 LTR ERVL 1 464 0 22 56 0 0 chr6 158201199 158201235 -31078319 + AT_rich Low_complexity Low_complexity 1 36 0 231 321 37 0 chr6 158201307 158201388 -31078166 + L2 LINE L2 3189 3272 0 22 0 0 0 chr6 158201932 158201954 -31077600 + AT_rich Low_complexity Low_complexity 1 22 0 282 299 5 49 chr6 158203116 158203300 -31076254 + GA-rich Low_complexity Low_complexity 3 178 0 198 71 0 0 chr6 158203391 158203419 -31076135 + (TC)n Simple_repeat Simple_repeat 1 28 0 1801 169 0 41 chr6 158203419 158203739 -31075815 - AluJo SINE Alu -5 307 1 293 294 0 0 chr6 158203746 158203814 -31075740 + L2 LINE L2 3246 3313 0 660 278 162 52 chr6 158203828 158204216 -31075338 + L2 LINE L2 2883 3313 0 2265 108 0 0 chr6 158204602 158204899 -31074655 - AluSc SINE Alu -12 297 1 364 315 28 28 chr6 158205443 158205586 -31073968 - L3 LINE CR1 -1 1576 1434 200 240 0 0 chr6 158205625 158205675 -31073879 - L3 LINE CR1 -346 1231 1182 306 397 20 10 chr6 158205941 158206145 -31073409 + L2 LINE L2 2470 2675 -639 2259 108 0 0 chr6 158206321 158206616 -31072938 + AluSc SINE Alu 1 295 -14 223 277 106 11 chr6 158207089 158207183 -31072371 + L2 LINE L2 3170 3272 0 270 338 150 6 chr6 158208197 158208357 -31071197 - L2 LINE L2 0 3272 3090 876 211 99 47 chr6 158208798 158209140 -31070414 - MER39 LTR ERV1 -41 666 307 563 333 30 26 chr6 158210049 158210283 -31069271 - MIR SINE MIR -26 236 2 275 274 16 0 chr6 158210385 158210447 -31069107 - L2 LINE L2 0 3313 3251 311 266 75 21 chr6 158210548 158210642 -31068912 - L2 LINE L2 0 3272 3174 219 343 121 14 chr6 158210673 158210813 -31068741 + MIR3 SINE MIR 32 186 -22 698 278 69 81 chr6 158210935 158211087 -31068467 - MLT1L LTR MaLR 0 615 463 2231 92 0 0 chr6 158211087 158211399 -31068155 - AluSx SINE Alu 0 312 1 698 278 69 81 chr6 158211399 158211680 -31067874 - MLT1L LTR MaLR -152 463 186 905 256 0 0 chr6 158213225 158213416 -31066138 + MIR SINE MIR 3 193 -69 217 333 49 0 chr6 158213461 158213563 -31065991 - MIR SINE MIR -51 211 105 583 230 136 66 chr6 158213771 158214058 -31065496 - MER5C DNA MER1_type -11 313 7 252 186 34 51 chr6 158214708 158214767 -31064787 - L2 LINE L2 -1 3312 3255 * 727 224 6 24 chr6 158214736 158214879 -31064675 - MIR SINE MIR -22 240 99 1717 131 156 28 chr6 158214879 158215199 -31064355 + MER46B DNA MER2_type 1 236 0 727 224 6 24 chr6 158215199 158215220 -31064334 - MIR SINE MIR -163 99 79 519 262 54 35 chr6 158215567 158215772 -31063782 - MIR SINE MIR -56 206 1 561 243 6 45 chr6 158216997 158217174 -31062380 - MER117 DNA MER1_type -19 178 9 1263 119 46 5 chr6 158219070 158219264 -31060290 + MER30 DNA MER1_type 1 202 -28 2449 106 48 31 chr6 158219372 158219730 -31059824 - THE1B LTR MaLR 0 364 1 399 233 33 0 chr6 158219817 158219907 -31059647 - MIR SINE MIR 0 262 170 1746 249 64 39 chr6 158220002 158220297 -31059257 - MER77 LTR ERV1 -4 601 286 1826 125 4 4 chr6 158220297 158220553 -31059001 - AluSc SINE Alu -19 290 35 1746 249 64 39 chr6 158220553 158220792 -31058762 - MER77 LTR ERV1 -319 286 54 609 238 0 0 chr6 158220812 158220938 -31058616 - MIR SINE MIR -108 154 29 201 282 13 39 chr6 158221916 158221994 -31057560 - MER5A DNA MER1_type -79 110 35 * 245 329 24 0 chr6 158221929 158222011 -31057543 + MER5B DNA MER1_type 89 172 -6 1048 195 116 122 chr6 158223587 158223872 -31055682 + MLT1D LTR MaLR 27 312 -193 1393 106 83 28 chr6 158223872 158224090 -31055464 - MER30 DNA MER1_type 0 230 1 1048 195 116 122 chr6 158224090 158224222 -31055332 + MLT1D LTR MaLR 312 443 -62 2202 91 3 0 chr6 158224222 158224508 -31055046 - AluSx SINE Alu -25 287 1 1048 195 116 122 chr6 158224508 158224571 -31054983 + MLT1D LTR MaLR 443 505 0 197 242 42 9 chr6 158224714 158224794 -31054760 + L2 LINE L2 3148 3313 0 2176 106 0 10 chr6 158225261 158225562 -31053992 - AluSq SINE Alu 0 313 16 1992 245 112 17 chr6 158225829 158226364 -31053190 - MLT1E LTR MaLR -7 586 1 1402 152 16 91 chr6 158227888 158228197 -31051357 + AluJb SINE Alu 1 286 -26 1478 198 60 45 chr6 158228407 158228760 -31050794 - MLT1B LTR MaLR 0 390 33 1402 152 16 91 chr6 158230787 158231096 -31048458 + AluJb SINE Alu 1 286 -26 1898 185 44 26 chr6 158231306 158231689 -31047865 - MLT1B LTR MaLR 0 390 1 25 31 0 0 chr6 158231833 158231865 -31047689 + AT_rich Low_complexity Low_complexity 1 32 0 195 321 12 24 chr6 158232479 158232563 -31046991 - L3 LINE CR1 -712 865 783 21 36 0 0 chr6 158232836 158232864 -31046690 + AT_rich Low_complexity Low_complexity 1 28 0 215 31 31 0 chr6 158233389 158233421 -31046133 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 239 167 33 17 chr6 158233613 158233673 -31045881 + T-rich Low_complexity Low_complexity 2 62 0 202 156 0 0 chr6 158234246 158234278 -31045276 + MIR SINE MIR 118 149 -113 538 162 44 73 chr6 158234802 158234938 -31044616 + MSTB1 LTR MaLR 22 153 -279 252 222 0 0 chr6 158234943 158234988 -31044566 - MSTB1 LTR MaLR -224 208 164 1028 171 28 33 chr6 158235122 158235333 -31044221 + MSTB1 LTR MaLR 223 432 0 518 315 78 35 chr6 158235333 158235679 -31043875 + L2 LINE L2 1903 2263 -1051 266 286 136 43 chr6 158235800 158235940 -31043614 - L2 LINE L2 -838 2476 2324 2186 89 40 30 chr6 158236070 158236374 -31043180 - AluY SINE Alu -3 308 2 793 260 26 13 chr6 158236647 158236874 -31042680 - MIR SINE MIR 0 262 33 2208 114 0 0 chr6 158237189 158237487 -31042067 - AluSx SINE Alu -14 298 1 209 246 0 33 chr6 158239292 158239353 -31040201 + CT-rich Low_complexity Low_complexity 3 61 0 229 281 88 12 chr6 158239583 158239743 -31039811 - L1ME4a LINE L1 -17 6104 5933 371 259 38 38 chr6 158239800 158239931 -31039623 - L1ME4a LINE L1 -302 5819 5689 23 0 0 0 chr6 158241037 158241060 -31038494 + AT_rich Low_complexity Low_complexity 1 23 0 2375 90 3 0 chr6 158242123 158242424 -31037130 + AluSg SINE Alu 1 302 -8 1221 120 80 5 chr6 158242502 158242702 -31036852 + L1MA9 LINE L1 6098 6312 0 1482 183 19 8 chr6 158242717 158242974 -31036580 + AluJo SINE Alu 1 260 -52 1426 245 28 23 chr6 158244835 158245268 -31034286 + LTR16A LTR ERVL 16 450 0 2400 244 31 23 chr6 158245344 158246029 -31033525 + L1ME3A LINE L1 5461 6150 -20 234 274 204 9 chr6 158246174 158246287 -31033267 - MIR3 SINE MIR -70 138 4 261 244 0 0 chr6 158246847 158246933 -31032621 + (TG)n Simple_repeat Simple_repeat 1 86 0 308 253 101 68 chr6 158248295 158248672 -31030882 - MLT1I LTR MaLR 0 450 39 245 345 17 51 chr6 158248794 158248902 -31030652 - L2 LINE L2 -459 2855 2754 2301 97 0 0 chr6 158248902 158249191 -31030363 + AluSg SINE Alu 1 289 -21 245 345 17 51 chr6 158249191 158249259 -31030295 - L2 LINE L2 -560 2754 2685 2467 103 39 31 chr6 158249589 158249948 -31029606 - THE1B LTR MaLR -2 362 1 695 256 62 38 chr6 158250304 158250515 -31029039 + MIR SINE MIR 21 236 -26 195 42 0 0 chr6 158250723 158250747 -31028807 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 638 311 59 17 chr6 158250763 158251013 -31028541 + MIR SINE MIR 4 262 0 1144 222 113 65 chr6 158254326 158254507 -31025047 - MER113 DNA MER1_type? 0 521 350 2393 96 0 0 chr6 158254507 158254819 -31024735 - AluSx SINE Alu 0 312 1 1144 222 113 65 chr6 158254819 158255073 -31024481 - MER113 DNA MER1_type? -171 350 60 705 180 234 84 chr6 158255073 158255312 -31024242 + ORSL DNA AcHobo 1 275 0 1144 222 113 65 chr6 158255312 158255335 -31024219 - MER113 DNA MER1_type? -461 60 40 275 368 40 0 chr6 158255357 158255482 -31024072 - MIR3 SINE MIR -48 160 31 5224 92 9 1 chr6 158256265 158256939 -31022615 + L1PA14 LINE L1 5482 6160 -1 582 253 42 18 chr6 158257194 158257360 -31022194 + MIR SINE MIR 20 189 -73 356 283 18 18 chr6 158257369 158257482 -31022072 - L2 LINE L2 -15 3298 3186 21 0 0 0 chr6 158258191 158258212 -31021342 + AT_rich Low_complexity Low_complexity 1 21 0 736 260 161 43 chr6 158259467 158259933 -31019621 + L1ME4a LINE L1 5574 6094 -27 1806 123 0 8 chr6 158261430 158261690 -31017864 + AluSq SINE Alu 1 258 -55 498 243 19 0 chr6 158261931 158262034 -31017520 + MARNA DNA Mariner 62 166 -420 434 327 46 28 chr6 158263323 158263540 -31016014 - MIR SINE MIR -26 236 16 255 322 83 0 chr6 158263669 158263790 -31015764 + MIR SINE MIR 106 236 -26 225 0 0 0 chr6 158263790 158263815 -31015739 + (A)n Simple_repeat Simple_repeat 1 25 0 3914 221 18 25 chr6 158264693 158265603 -31013951 - MER4D LTR ERV1 0 903 1 3985 142 14 22 chr6 158266148 158266865 -31012689 - MER50 LTR ERV1 -23 711 1 1064 233 139 5 chr6 158267776 158268149 -31011405 - L2 LINE L2 -388 2926 2504 385 247 77 82 chr6 158268161 158268203 -31011351 + MIR SINE MIR 54 95 -167 1920 170 22 89 chr6 158268203 158268743 -31010811 + MLT1D LTR MaLR 1 504 -1 385 247 77 82 chr6 158268743 158268882 -31010672 + MIR SINE MIR 95 234 -28 211 263 162 20 chr6 158268874 158268973 -31010581 + L2 LINE L2 2865 2977 -336 * 402 211 95 0 chr6 158269050 158269145 -31010409 + MIR SINE MIR 89 192 -70 430 308 128 33 chr6 158269956 158270411 -31009143 + L2 LINE L2 1322 1819 -1495 820 269 50 38 chr6 158270430 158270668 -31008886 + MIR SINE MIR 1 241 -21 1242 311 140 28 chr6 158270670 158271771 -31007783 + L2 LINE L2 1851 3087 -185 300 91 0 0 chr6 158272103 158272147 -31007407 + (CA)n Simple_repeat Simple_repeat 2 45 0 820 323 50 50 chr6 158272964 158273364 -31006190 - L2 LINE L2 -1 3271 2872 732 158 0 0 chr6 158273505 158273676 -31005878 + (TTGG)n Simple_repeat Simple_repeat 4 174 0 236 306 56 28 chr6 158273761 158273869 -31005685 + L2 LINE L2 2643 2753 -561 779 177 88 7 chr6 158274596 158274815 -31004739 + AluJo SINE Alu 1 287 -25 242 50 75 0 chr6 158275562 158275602 -31003952 - L1M4 LINE L1 -422 5762 5720 556 281 102 51 chr6 158275823 158276158 -31003396 + L2 LINE L2 2921 3272 0 22 35 0 0 chr6 158276668 158276697 -31002857 + AT_rich Low_complexity Low_complexity 1 29 0 631 101 0 30 chr6 158276993 158277092 -31002462 - AluY SINE Alu 0 311 216 235 86 0 0 chr6 158277460 158277495 -31002059 + THE1-int LTR MaLR 783 817 -763 2125 129 44 16 chr6 158277495 158277859 -31001695 - THE1C LTR MaLR -1 374 1 210 128 0 0 chr6 158278229 158278268 -31001286 + (T)n Simple_repeat Simple_repeat 1 39 0 7526 32 0 0 chr6 158278275 158279193 -31000361 - L1PA3 LINE L1 -3 6152 5237 42466 34 5 2 chr6 158279293 158285280 -30994274 - L1PA3 LINE L1 -146 6009 3 34 0 0 0 chr6 158285853 158285887 -30993667 + AT_rich Low_complexity Low_complexity 1 34 0 817 212 34 61 chr6 158285890 158286386 -30993168 + L1MCa LINE L1 1443 2012 -4414 9326 202 53 15 chr6 158286388 158288163 -30991391 + L1MA3 LINE L1 2229 3935 -2650 997 96 0 96 chr6 158288163 158288362 -30991192 + L1MA4A LINE L1 6123 6302 -1 9326 202 53 15 chr6 158288362 158290769 -30988785 + L1MA3 LINE L1 3935 6584 -1 36 0 0 0 chr6 158290770 158290806 -30988748 + AT_rich Low_complexity Low_complexity 1 36 0 3268 234 44 30 chr6 158290808 158290989 -30988565 + L1M4 LINE L1 4018 4195 -1951 1405 188 48 55 chr6 158290989 158291298 -30988256 + AluJo SINE Alu 1 307 -5 3268 234 44 30 chr6 158291298 158291679 -30987875 + L1M4 LINE L1 4195 4569 -1577 3545 104 12 2 chr6 158291679 158292188 -30987366 - MER75 DNA T2_type 0 514 1 3268 234 44 30 chr6 158292188 158292710 -30986844 + L1M4 LINE L1 4569 5119 -1027 492 242 71 45 chr6 158292707 158292976 -30986578 + HAL1 LINE L1 2083 2358 -149 * 882 281 4 22 chr6 158292982 158293260 -30986294 + L1PB1 LINE L1 4 276 -5865 970 68 8 0 chr6 158293263 158293396 -30986158 - L1PBa LINE L1 -4305 2558 2425 10197 163 18 6 chr6 158293408 158296549 -30983005 + L1PB1 LINE L1 3036 6212 -3 574 196 53 48 chr6 158296574 158296763 -30982791 + L1MA9 LINE L1 3186 3375 -2771 * 3807 175 53 16 chr6 158296749 158297741 -30981813 + L1MA9 LINE L1 5095 6135 -177 2392 80 7 0 chr6 158297741 158298040 -30981514 - AluSp SINE Alu -12 301 1 538 208 96 11 chr6 158298232 158298410 -30981144 + L1MA10 LINE L1 6141 6333 -1 1908 107 39 4 chr6 158298417 158298698 -30980856 + AluSx SINE Alu 1 291 -21 264 184 15 147 chr6 158298716 158298852 -30980702 + HAL1 LINE L1 2348 2465 -42 334 289 124 16 chr6 158298965 158299086 -30980468 + L2 LINE L2 3134 3267 -5 186 315 68 56 chr6 158299245 158299407 -30980147 - L2 LINE L2 -1551 1763 1600 262 353 20 0 chr6 158300112 158300235 -30979319 - MIR SINE MIR -65 143 45 867 202 23 6 chr6 158300280 158300453 -30979101 - MER45A DNA AcHobo 0 178 3 217 333 0 0 chr6 158300842 158300911 -30978643 + L2 LINE L2 3245 3313 0 284 125 0 62 chr6 158301451 158301515 -30978039 + L1ME4a LINE L1 6061 6120 -1 339 232 54 58 chr6 158301628 158301765 -30977789 + MIR SINE MIR 41 176 -65 1062 327 34 13 chr6 158302253 158302779 -30976775 + L2 LINE L2 1996 2532 -782 413 233 17 8 chr6 158302802 158302922 -30976632 + MER112 DNA MER1_type 69 189 -71 477 227 0 53 chr6 158302924 158303056 -30976498 + MER63 DNA MER1_type 1 751 -311 693 354 35 65 chr6 158303532 158304334 -30975220 - L2 LINE L2 -1 3271 2494 872 325 78 15 chr6 158304817 158305278 -30974276 - L2 LINE L2 -810 2504 2015 200 356 34 0 chr6 158305642 158305701 -30973853 + L2 LINE L2 3137 3197 -75 268 252 244 0 chr6 158306377 158306492 -30973062 + MIR SINE MIR 59 201 -61 1594 137 76 52 chr6 158306732 158307060 -30972494 + MER58B DNA MER1_type 6 341 0 202 230 95 0 chr6 158307101 158307175 -30972379 + MIR SINE MIR 168 248 -14 * 205 200 0 0 chr6 158307144 158307184 -30972370 + L2 LINE L2 3263 3302 -11 1264 242 103 27 chr6 158307206 158307806 -30971748 - L2 LINE L2 -2 3311 2661 225 174 5 209 chr6 158308184 158308275 -30971279 - MER106B DNA MER1_type -3 1056 1027 2142 158 7 24 chr6 158308275 158308700 -30970854 - L1MB4 LINE L1 0 6180 5763 225 174 5 209 chr6 158308700 158308809 -30970745 - MER106B DNA MER1_type -32 1027 897 2143 111 0 0 chr6 158308946 158309267 -30970287 - AluSx SINE Alu 0 325 5 1059 196 130 7 chr6 158309919 158310204 -30969350 + L1MD3 LINE L1 7665 7984 -11 207 197 197 15 chr6 158311417 158311483 -30968071 - L2 LINE L2 -13 3259 3182 370 283 58 102 chr6 158312243 158312351 -30967203 + MER102b DNA MER1_type 2 113 -1315 2401 94 0 0 chr6 158312351 158312650 -30966904 + AluSc SINE Alu 1 299 -10 370 283 58 102 chr6 158312650 158312772 -30966782 + MER102b DNA MER1_type 113 215 -1213 1906 150 37 0 chr6 158312772 158313072 -30966482 + AluSx SINE Alu 1 311 -1 370 283 58 102 chr6 158313072 158313183 -30966371 + MER102b DNA MER1_type 215 329 -12 320 306 90 0 chr6 158313394 158313528 -30966026 - MIR3 SINE MIR -1 207 62 706 148 93 82 chr6 158313553 158313735 -30965819 - MLT1B LTR MaLR -206 184 1 1658 184 52 42 chr6 158313736 158314213 -30965341 - MLT1B-int LTR MaLR -1 1723 954 1553 193 0 0 chr6 158314256 158314536 -30965018 - MLT1B-int LTR MaLR -471 900 621 397 250 102 16 chr6 158315765 158315893 -30963661 - L2 LINE L2 -5 3308 3170 2373 70 3 10 chr6 158317559 158317861 -30961693 - AluY SINE Alu -11 300 1 23 68 0 0 chr6 158317905 158317949 -30961605 + AT_rich Low_complexity Low_complexity 1 44 0 32 103 0 0 chr6 158318025 158318141 -30961413 + AT_rich Low_complexity Low_complexity 1 116 0 474 269 113 9 chr6 158318204 158318416 -30961138 + ERVL LTR ERVL 2147 2380 -3384 1946 152 5 61 chr6 158318477 158318873 -30960681 + MLT1B LTR MaLR 16 389 -1 320 317 49 0 chr6 158318879 158319002 -30960552 + ERVL LTR ERVL 2381 2509 -3145 2138 105 10 0 chr6 158319027 158319322 -30960232 - AluSp SINE Alu -15 298 1 29 0 0 0 chr6 158320689 158320718 -30958836 + AT_rich Low_complexity Low_complexity 1 29 0 219 114 0 0 chr6 158320781 158320816 -30958738 + (TG)n Simple_repeat Simple_repeat 2 36 0 6033 85 11 3 chr6 158320824 158322323 -30957231 - L1PA13 LINE L1 -6 6157 4681 791 293 57 31 chr6 158322323 158322709 -30956845 + ERVL LTR ERVL 2668 3063 -2701 1904 86 0 4 chr6 158322794 158323038 -30956516 - AluSg SINE Alu -12 298 56 1166 247 133 71 chr6 158323038 158323589 -30955965 - MLT1G1 LTR MaLR -10 585 1 613 346 57 35 chr6 158323754 158324265 -30955289 + L1MC4a LINE L1 4458 4979 -1167 1343 251 72 51 chr6 158324287 158324969 -30954585 + L1MC4a LINE L1 5254 5949 -1859 618 291 172 49 chr6 158325204 158326244 -30953310 + L1M4 LINE L1 2893 4096 -2050 6168 153 38 22 chr6 158326341 158326832 -30952722 - L1MA5 LINE L1 -4 7358 6876 321 89 0 0 chr6 158326832 158326877 -30952677 + (TG)n Simple_repeat Simple_repeat 2 46 0 6168 153 38 22 chr6 158326877 158328679 -30950875 - L1MA5 LINE L1 -486 6876 5020 4065 60 0 2 chr6 158328680 158329198 -30950356 - L1PA8 LINE L1 -8 6164 5648 392 131 12 0 chr6 158329198 158329282 -30950272 - L1MA5 LINE L1 -5254 1955 1871 2693 46 9 0 chr6 158329284 158329634 -30949920 - L1P3 LINE L1 -485 5669 5317 5821 189 34 16 chr6 158329644 158331628 -30947926 - L1 LINE L1 -3342 3866 1846 444 263 8 0 chr6 158331618 158331751 -30947803 - L1 LINE L1 -6990 219 86 * 324 48 0 0 chr6 158332458 158332500 -30947054 + (TC)n Simple_repeat Simple_repeat 2 43 0 1591 182 132 3 chr6 158332589 158332946 -30946608 + MLT1D LTR MaLR 100 502 -3 384 103 0 0 chr6 158334961 158335019 -30944535 + (CA)n Simple_repeat Simple_repeat 1 58 0 3711 253 70 53 chr6 158335026 158338651 -30940903 + L1MEc LINE L1 92 3731 -2484 819 238 45 18 chr6 158340605 158340891 -30938663 + L1MEc LINE L1 3725 4018 -2197 1252 203 156 30 chr6 158341319 158341476 -30938078 - MER69B DNA AcHobo -1300 1226 1090 2202 109 0 3 chr6 158341476 158341769 -30937785 + AluSx SINE Alu 1 292 -20 1252 203 156 30 chr6 158341769 158342144 -30937410 - MER69B DNA AcHobo -1436 1090 627 189 0 0 0 chr6 158343056 158343077 -30936477 + (TG)n Simple_repeat Simple_repeat 2 22 0 217 155 0 121 chr6 158343224 158343282 -30936272 + polypyrimidine Low_complexity Low_complexity 2 52 0 646 263 38 21 chr6 158343944 158344130 -30935424 + MIR SINE MIR 6 194 -68 32 26 0 0 chr6 158344539 158344578 -30934976 + AT_rich Low_complexity Low_complexity 1 39 0 33 66 0 0 chr6 158344998 158345059 -30934495 + AT_rich Low_complexity Low_complexity 1 61 0 1630 255 32 24 chr6 158345071 158345668 -30933886 - HAL1 LINE L1 -1323 1184 583 2048 155 18 0 chr6 158346037 158346379 -30933175 + MER7A DNA MER2_type 1 346 0 31 44 0 0 chr6 158346430 158346475 -30933079 + AT_rich Low_complexity Low_complexity 1 45 0 247 248 29 29 chr6 158346560 158346665 -30932889 + L1M4 LINE L1 2661 2765 -3381 1468 185 7 33 chr6 158346723 158347026 -30932528 + AluJo SINE Alu 1 295 -17 207 328 133 42 chr6 158347109 158347350 -30932204 - L2 LINE L2 -385 2929 2667 838 203 0 0 chr6 158347433 158347596 -30931958 + MER3 DNA MER1_type 1 163 -46 399 263 68 0 chr6 158347663 158347796 -30931758 - L1MA10 LINE L1 -7 6327 6186 1635 190 0 14 chr6 158348422 158348717 -30930837 - AluJo SINE Alu -21 291 1 2105 124 7 10 chr6 158348731 158349037 -30930517 - AluSx SINE Alu -7 305 1 803 55 0 9 chr6 158349425 158349535 -30930019 + (TCCA)n Simple_repeat Simple_repeat 4 112 0 653 264 71 61 chr6 158349557 158349867 -30929687 - L2 LINE L2 -35 3278 2966 428 336 0 21 chr6 158349931 158350071 -30929483 - L2 LINE L2 -474 2840 2704 847 227 0 0 chr6 158350072 158350248 -30929306 - AluJo SINE Alu -15 297 122 618 188 0 102 chr6 158350305 158350491 -30929063 + MLT1D LTR MaLR 31 197 -308 195 274 118 89 chr6 158351351 158351486 -30928068 - L3b LINE CR1 -13 1570 1432 979 260 23 38 chr6 158352251 158352643 -30926911 - HAL1 LINE L1 -397 2110 1725 1500 226 3 3 chr6 158352668 158352977 -30926577 + AluJo SINE Alu 1 309 -3 669 110 0 0 chr6 158352984 158353084 -30926470 + (GGGA)n Simple_repeat Simple_repeat 4 103 0 943 266 56 58 chr6 158353085 158353547 -30926007 - HAL1 LINE L1 -804 1703 1243 285 75 0 0 chr6 158353549 158353589 -30925965 + (TC)n Simple_repeat Simple_repeat 2 41 0 2535 126 3 3 chr6 158353646 158354010 -30925544 + THE1B LTR MaLR 1 364 0 3860 128 21 3 chr6 158354174 158354840 -30924714 + L1PB4 LINE L1 5358 6035 -121 420 246 88 0 chr6 158354840 158354954 -30924600 - MER63 DNA MER1_type -312 750 1 2223 121 44 14 chr6 158355160 158355524 -30924030 + THE1C LTR MaLR 1 375 0 411 293 26 9 chr6 158355663 158355779 -30923775 + MIR SINE MIR 54 171 -91 25 31 0 0 chr6 158355890 158355922 -30923632 + AT_rich Low_complexity Low_complexity 1 32 0 199 211 14 28 chr6 158356532 158356603 -30922951 + GA-rich Low_complexity Low_complexity 2 71 0 216 389 71 0 chr6 158356779 158356892 -30922662 + L2 LINE L2 3132 3252 -20 21 57 0 0 chr6 158357174 158357209 -30922345 + AT_rich Low_complexity Low_complexity 1 35 0 284 339 8 58 chr6 158358264 158358385 -30921169 - L2 LINE L2 -4 3268 3154 447 270 102 95 chr6 158358790 158359223 -30920331 - L2 LINE L2 0 3313 2878 351 0 0 0 chr6 158359284 158359323 -30920231 + (TG)n Simple_repeat Simple_repeat 2 40 0 186 337 108 0 chr6 158359445 158359528 -30920026 - L3 LINE CR1 -22 1555 1464 1883 166 22 14 chr6 158359844 158360206 -30919348 - MLT1A1 LTR MaLR 0 365 1 428 324 112 0 chr6 158360217 158360396 -30919158 - MIR SINE MIR -15 247 49 24 0 0 0 chr6 158360693 158360717 -30918837 + AT_rich Low_complexity Low_complexity 1 24 0 375 98 0 0 chr6 158361003 158361064 -30918490 + (TC)n Simple_repeat Simple_repeat 1 61 0 207 277 0 0 chr6 158361412 158361459 -30918095 - MIR SINE MIR -129 79 33 207 0 0 0 chr6 158361511 158361534 -30918020 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr6 158361924 158361947 -30917607 + AT_rich Low_complexity Low_complexity 1 23 0 186 267 105 19 chr6 158362457 158362562 -30916992 - L2 LINE L2 -337 2977 2864 21 0 0 0 chr6 158363272 158363293 -30916261 + AT_rich Low_complexity Low_complexity 1 21 0 2455 146 17 42 chr6 158363889 158364369 -30915185 - L1PA15 LINE L1 -1 6164 5697 317 318 127 0 chr6 158364937 158365047 -30914507 + L2 LINE L2 3144 3267 -5 21 36 0 0 chr6 158365198 158365226 -30914328 + AT_rich Low_complexity Low_complexity 1 28 0 2306 89 0 16 chr6 158365289 158365592 -30913962 - AluSc SINE Alu -11 298 1 2596 118 41 12 chr6 158365605 158366021 -30913533 + MSTA LTR MaLR 1 428 0 202 255 20 0 chr6 158366626 158366677 -30912877 - L2 LINE L2 -938 2376 2325 1674 199 46 40 chr6 158367184 158367556 -30911998 + MLT1A2 LTR MaLR 1 374 0 2082 150 109 54 chr6 158368686 158368870 -30910684 - MLT1C LTR MaLR -2 465 292 2311 171 79 0 chr6 158368870 158369263 -30910291 + MSTA LTR MaLR 1 424 -4 2082 150 109 54 chr6 158369263 158369333 -30910221 - MLT1C LTR MaLR -175 292 227 213 39 0 0 chr6 158369333 158369359 -30910195 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2122 112 0 0 chr6 158369362 158369640 -30909914 - AluSc SINE Alu -31 278 1 2082 150 109 54 chr6 158369640 158369821 -30909733 - MLT1C LTR MaLR -241 226 1 466 313 76 55 chr6 158369822 158370501 -30909053 - L2 LINE L2 -19 3253 2560 363 276 198 47 chr6 158370640 158370832 -30908722 - MIR SINE MIR -22 240 20 1709 165 3 34 chr6 158370834 158371156 -30908398 - AluJo SINE Alu 0 312 1 281 258 15 0 chr6 158371213 158371279 -30908275 + L2 LINE L2 3244 3310 -3 451 269 51 51 chr6 158372961 158373136 -30906418 - MIR SINE MIR -65 197 23 267 213 16 0 chr6 158375093 158375154 -30904400 + L3 LINE CR1 1504 1565 -12 2069 134 10 0 chr6 158375379 158375677 -30903877 + AluSx SINE Alu 1 301 -11 819 328 51 18 chr6 158376199 158376670 -30902884 - L2 LINE L2 -81 3232 2748 185 355 105 26 chr6 158377824 158377976 -30901578 - MIR3 SINE MIR -15 193 30 2421 133 5 46 chr6 158379232 158379644 -30899910 - MER4E LTR ERV1 -22 757 363 204 125 0 0 chr6 158379644 158379676 -30899878 + (TC)n Simple_repeat Simple_repeat 1 32 0 2113 136 0 13 chr6 158379676 158379992 -30899562 - AluSq SINE Alu -1 312 1 1510 86 0 86 chr6 158379992 158380236 -30899318 - MER4B LTR ERV1 -387 223 1 260 273 0 34 chr6 158381647 158381735 -30897819 + MER91A DNA MER1_type 1 85 -111 203 271 100 0 chr6 158381807 158381877 -30897677 + MER91A DNA MER1_type 120 196 0 261 139 0 0 chr6 158382227 158382270 -30897284 + (A)n Simple_repeat Simple_repeat 1 43 0 344 291 78 35 chr6 158382311 158382577 -30896977 - L1ME LINE L1 -480 5641 5360 187 225 0 0 chr6 158382989 158383029 -30896525 - MIR SINE MIR -3 259 220 232 241 116 45 chr6 158383105 158383217 -30896337 + MIR SINE MIR 132 251 -11 322 332 50 25 chr6 158384607 158384809 -30894745 + L1MC4a LINE L1 4630 4836 -1310 2948 233 73 72 chr6 158384877 158386145 -30893409 + L1MC4a LINE L1 4929 5398 -748 346 223 126 10 chr6 158386158 158386261 -30893293 - LTR41 LTR ERVL -10 763 649 2321 67 13 13 chr6 158386778 158387077 -30892477 + AluY SINE Alu 1 299 -12 538 268 7 21 chr6 158387098 158387240 -30892314 + MIR SINE MIR 27 166 -96 2381 135 19 16 chr6 158387349 158387720 -30891834 + THE1C LTR MaLR 1 372 -3 1776 119 56 69 chr6 158388692 158388995 -30890559 - AluSx SINE Alu -13 299 1 296 255 19 57 chr6 158390449 158390555 -30888999 - L2 LINE L2 -2 3270 3169 285 289 66 50 chr6 158390979 158391100 -30888454 - L2 LINE L2 -12 3260 3138 967 156 6 58 chr6 158392012 158392185 -30887369 + FAM SINE Alu 1 164 -11 505 279 23 8 chr6 158392508 158392637 -30886917 + MIR SINE MIR 18 148 -114 247 333 22 0 chr6 158392641 158392731 -30886823 + MLT1H LTR MaLR 9 100 -449 254 274 26 77 chr6 158392845 158392962 -30886592 + MLT1H LTR MaLR 231 341 -208 192 288 82 0 chr6 158393108 158393181 -30886373 + MIR SINE MIR 146 224 -38 23 0 0 0 chr6 158393453 158393476 -30886078 + AT_rich Low_complexity Low_complexity 1 23 0 2015 146 0 7 chr6 158393573 158393868 -30885686 + AluSx SINE Alu 1 293 -19 657 306 119 4 chr6 158393966 158394201 -30885353 + MIR SINE MIR 1 262 0 2261 110 0 0 chr6 158396251 158396551 -30883003 + AluY SINE Alu 1 300 -11 23 0 0 0 chr6 158398401 158398424 -30881130 + AT_rich Low_complexity Low_complexity 1 23 0 2340 62 7 7 chr6 158398424 158398712 -30880842 + AluY SINE Alu 1 288 -23 1611 151 39 7 chr6 158398716 158399000 -30880554 - AluJo SINE Alu -19 293 1 336 258 0 0 chr6 158399219 158399285 -30880269 + MIR SINE MIR 1 66 -196 536 227 89 28 chr6 158399301 158399462 -30880092 + MLT1I LTR MaLR 9 211 -243 550 232 174 7 chr6 158399467 158399622 -30879932 + MER5A DNA MER1_type 9 189 0 287 228 88 53 chr6 158399712 158399826 -30879728 + MLT1I LTR MaLR 289 406 -3 401 205 24 0 chr6 158399831 158399914 -30879640 + MIR SINE MIR 71 155 -107 1746 211 15 3 chr6 158400231 158400568 -30878986 - MER58B DNA MER1_type 0 341 1 2202 185 40 49 chr6 158400597 158401067 -30878487 - MER31B LTR ERV1 0 466 1 1064 229 88 107 chr6 158401991 158402341 -30877213 + L1MC4 LINE L1 7282 7620 -422 1675 136 73 24 chr6 158402341 158402628 -30876926 + AluJo SINE Alu 6 306 -6 1064 229 88 107 chr6 158402628 158402800 -30876754 + L1MC4 LINE L1 7620 7794 -248 440 18 18 0 chr6 158402825 158402882 -30876672 + (TG)n Simple_repeat Simple_repeat 2 59 0 351 0 0 0 chr6 158404200 158404239 -30875315 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 57 0 0 chr6 158404612 158404647 -30874907 + AT_rich Low_complexity Low_complexity 1 35 0 281 315 62 56 chr6 158404708 158404870 -30874684 + L2 LINE L2 3075 3237 -76 620 234 132 0 chr6 158406043 158406210 -30873344 + MIR SINE MIR 74 262 0 714 245 128 0 chr6 158406261 158406449 -30873105 + MER58C DNA MER1_type 4 215 0 398 247 94 47 chr6 158407380 158407550 -30872004 - MER5B DNA MER1_type 0 178 1 2375 61 7 14 chr6 158407674 158407968 -30871586 - AluY SINE Alu -19 292 1 338 297 34 17 chr6 158411673 158411791 -30867763 + MIR SINE MIR 49 168 -94 205 235 39 0 chr6 158412215 158412266 -30867288 + MER5B DNA MER1_type 2 54 -124 33 0 0 0 chr6 158413950 158413983 -30865571 + AT_rich Low_complexity Low_complexity 1 33 0 2099 228 36 60 chr6 158416330 158416962 -30862592 + L1ME2 LINE L1 5548 6164 0 186 300 71 29 chr6 158417309 158417379 -30862175 + L3 LINE CR1 9 81 -1496 1178 199 208 21 chr6 158417988 158418324 -30861230 + MLT1D LTR MaLR 107 505 0 4292 173 124 24 chr6 158418331 158418461 -30861093 + L1MD2 LINE L1 5188 5304 -1055 1835 182 150 0 chr6 158418461 158418834 -30860720 - MSTB1 LTR MaLR 0 432 4 4292 173 124 24 chr6 158418834 158419573 -30859981 + L1MD2 LINE L1 5304 6185 -174 330 87 0 0 chr6 158419573 158419619 -30859935 + (CA)n Simple_repeat Simple_repeat 1 46 0 4292 173 124 24 chr6 158419619 158419795 -30859759 + L1MD2 LINE L1 6185 6342 -17 213 325 65 16 chr6 158419810 158419988 -30859566 - L2 LINE L2 -1207 2107 1851 653 236 88 32 chr6 158420116 158420332 -30859222 - MIR SINE MIR -1 261 34 251 196 0 0 chr6 158420335 158420381 -30859173 - L2 LINE L2 0 3313 3268 604 143 0 0 chr6 158420559 158420650 -30858904 + FRAM SINE Alu 72 162 -14 2306 111 3 9 chr6 158420652 158420967 -30858587 + AluSq SINE Alu 1 313 0 255 296 0 71 chr6 158422835 158422933 -30856621 + L2 LINE L2 3173 3263 -9 700 283 70 38 chr6 158423108 158423578 -30855976 - L1ME4a LINE L1 -1 6120 5636 526 282 34 29 chr6 158423820 158424026 -30855528 + MIR SINE MIR 40 246 -16 1074 192 10 5 chr6 158424199 158424397 -30855157 + MER3 DNA MER1_type 5 203 -6 234 293 64 7 chr6 158424603 158424743 -30854811 + HAL1b LINE L1 1193 1340 -8 260 259 12 24 chr6 158424793 158424878 -30854676 - L1ME4a LINE L1 -482 5639 5556 5021 46 0 13 chr6 158424881 158425517 -30854037 + L1PA5 LINE L1 5524 6151 -3 254 242 121 24 chr6 158425708 158425832 -30853722 - L1M2 LINE L1 -823 5468 5333 725 159 0 62 chr6 158425834 158425979 -30853575 + FLAM_C SINE Alu 6 141 -2 1688 181 0 17 chr6 158426156 158426455 -30853099 - AluJb SINE Alu -18 294 1 505 167 12 0 chr6 158426668 158426752 -30852802 - Tigger3(Golem) DNA MER2_type -2907 122 38 266 31 0 0 chr6 158426745 158426777 -30852777 + Tigger3(Golem) DNA MER2_type 55 86 -2943 * 523 89 114 0 chr6 158426912 158426991 -30852563 + 5S rRNA rRNA 1 88 -33 520 326 109 9 chr6 158429985 158430206 -30849348 - MIR SINE MIR 0 262 20 514 188 0 0 chr6 158430595 158430691 -30848863 - AluJ/FRAM SINE Alu -2 310 215 1295 157 5 10 chr6 158430776 158430980 -30848574 - AluJo SINE Alu -108 204 2 1588 150 137 0 chr6 158431018 158431477 -30848077 - Charlie1b DNA MER1_type -7 516 1 186 43 0 0 chr6 158431604 158431627 -30847927 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 249 271 136 34 chr6 158431629 158431747 -30847807 - L2 LINE L2 -6 3266 3137 246 364 10 10 chr6 158431962 158432061 -30847493 - L2 LINE L2 -450 2864 2766 283 313 96 0 chr6 158432097 158432180 -30847374 - MER5A DNA MER1_type -28 161 71 255 264 58 11 chr6 158432178 158432265 -30847289 - L2 LINE L2 0 3313 3223 * 2216 46 0 76 chr6 158432275 158432618 -30846936 - AluY SINE Alu 0 320 1 300 297 86 74 chr6 158432717 158432986 -30846568 - L2 LINE L2 -555 2759 2488 463 317 67 18 chr6 158433208 158433372 -30846182 - MIR3 SINE MIR -12 196 25 1309 203 32 51 chr6 158433569 158433885 -30845669 - MLT1B LTR MaLR -29 361 52 463 319 42 0 chr6 158435748 158435914 -30843640 - L1ME4a LINE L1 -220 5901 5729 693 257 251 28 chr6 158436490 158436922 -30842632 - L2 LINE L2 -1 3312 2782 195 288 135 27 chr6 158437246 158437357 -30842197 - MIR3 SINE MIR -1 207 85 218 307 158 10 chr6 158437464 158437565 -30841989 + MIR SINE MIR 135 250 -12 2365 101 3 0 chr6 158437686 158437994 -30841560 + AluSp SINE Alu 1 309 -4 1395 247 85 30 chr6 158438041 158438478 -30841076 - LTR16B LTR ERVL 0 464 4 1993 143 0 3 chr6 158438768 158439061 -30840493 + AluJb SINE Alu 1 292 -20 330 276 103 0 chr6 158439659 158439775 -30839779 - L1ME4a LINE L1 -34 6087 5960 23 0 0 0 chr6 158439858 158439881 -30839673 + AT_rich Low_complexity Low_complexity 1 23 0 372 272 64 8 chr6 158440873 158440998 -30838556 - MIR SINE MIR -32 230 99 467 198 0 0 chr6 158442518 158442609 -30836945 - AluJ/FRAM SINE Alu 0 312 222 746 157 92 27 chr6 158442997 158443182 -30836372 + MER5C DNA MER1_type 127 323 -1 310 299 51 37 chr6 158443195 158443261 -30836293 + L1MC4a LINE L1 5776 5840 -1968 2798 156 84 12 chr6 158443261 158443774 -30835780 + MER44D DNA MER2_type 1 605 0 310 299 51 37 chr6 158443774 158443921 -30835633 + L1MC4a LINE L1 5840 5992 -1816 327 310 145 28 chr6 158443947 158444202 -30835352 + L1MC4a LINE L1 6054 6338 -1470 940 240 34 92 chr6 158444418 158444474 -30835080 + L1MC5 LINE L1 6565 6623 -1185 189 0 0 0 chr6 158444474 158444495 -30835059 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 940 240 34 92 chr6 158444495 158444974 -30834580 + L1MC5 LINE L1 6623 6954 -854 21 36 0 0 chr6 158445123 158445151 -30834403 + AT_rich Low_complexity Low_complexity 1 28 0 429 242 10 0 chr6 158445354 158445453 -30834101 + MIR SINE MIR 156 255 -7 207 0 0 0 chr6 158445746 158445769 -30833785 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7141 44 0 0 chr6 158445773 158446988 -30832566 - L1PA5 LINE L1 -8 6146 4946 2164 108 0 0 chr6 158447072 158447351 -30832203 - AluSc SINE Alu -30 279 1 22 56 0 0 chr6 158448573 158448609 -30830945 + AT_rich Low_complexity Low_complexity 1 36 0 329 269 164 18 chr6 158450532 158450703 -30828851 + HAL1 LINE L1 1217 1412 -1095 1218 167 35 51 chr6 158450725 158450982 -30828572 + AluJo SINE Alu 40 292 -20 1450 175 4 19 chr6 158450984 158451241 -30828313 + AluJo SINE Alu 37 289 -23 23 33 0 0 chr6 158451241 158451271 -30828283 + AT_rich Low_complexity Low_complexity 1 30 0 2307 78 0 36 chr6 158451271 158451579 -30827975 + AluSg SINE Alu 1 297 -13 28 0 0 0 chr6 158452050 158452078 -30827476 + AT_rich Low_complexity Low_complexity 1 28 0 497 315 140 25 chr6 158452232 158452475 -30827079 + L2 LINE L2 1848 2148 -1166 1793 173 3 10 chr6 158452475 158452781 -30826773 + AluJb SINE Alu 3 306 -6 497 315 140 25 chr6 158452781 158452902 -30826652 + L2 LINE L2 2148 2254 -1060 2817 265 147 44 chr6 158452987 158454736 -30824818 - L2 LINE L2 0 3313 1380 554 183 35 9 chr6 158454785 158454900 -30824654 - MIR SINE MIR 0 262 145 2347 200 70 4 chr6 158454984 158455530 -30824024 + L1MB8 LINE L1 5595 6176 -2 246 380 33 8 chr6 158455690 158455811 -30823743 + MIR3 SINE MIR 15 138 -70 21 0 0 0 chr6 158457063 158457084 -30822470 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr6 158457265 158457324 -30822230 + AT_rich Low_complexity Low_complexity 1 59 0 1600 170 4 8 chr6 158457844 158458109 -30821445 + AluJb SINE Alu 13 276 -36 240 156 67 0 chr6 158458252 158458342 -30821212 + (TA)n Simple_repeat Simple_repeat 1 96 0 480 217 148 0 chr6 158458458 158458573 -30820981 - MIR SINE MIR -70 192 61 355 316 107 10 chr6 158458633 158458829 -30820725 + L1ME4a LINE L1 3787 4001 -2145 690 188 4 15 chr6 158458839 158459092 -30820462 + AluJo SINE Alu 1 301 -11 249 331 32 0 chr6 158459116 158459240 -30820314 + L1ME4a LINE L1 4033 4160 -1986 320 359 223 16 chr6 158460303 158460844 -30818710 - L2 LINE L2 -16 3297 2631 472 325 5 20 chr6 158460860 158461060 -30818494 - L2 LINE L2 0 3313 3117 276 204 0 19 chr6 158461367 158461421 -30818133 - L2 LINE L2 -678 2636 2584 301 275 46 9 chr6 158461648 158461757 -30817797 + L1ME4a LINE L1 5386 5498 -668 322 267 67 72 chr6 158461809 158462004 -30817550 + L1ME4a LINE L1 5695 5888 -233 275 269 103 21 chr6 158462050 158462195 -30817359 + L1ME4a LINE L1 5956 6112 -9 986 188 61 14 chr6 158463901 158464114 -30815440 - MER58A DNA MER1_type 0 224 2 566 219 53 0 chr6 158464405 158464519 -30815035 + MER58A DNA MER1_type 15 134 0 1655 202 149 10 chr6 158465354 158465769 -30813785 - Charlie4a DNA MER1_type 0 508 36 26 64 0 0 chr6 158466607 158466654 -30812900 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr6 158469278 158469307 -30810247 + AT_rich Low_complexity Low_complexity 1 29 0 1233 171 33 19 chr6 158469316 158469527 -30810027 + AluJb SINE Alu 85 298 -14 1036 106 0 0 chr6 158469828 158469970 -30809584 + AluSg/x SINE Alu 168 309 -3 250 57 0 29 chr6 158470196 158470231 -30809323 + tRNA-Gly-GGA tRNA tRNA 3 36 -39 455 127 16 0 chr6 158470268 158470331 -30809223 - FLAM_A SINE Alu -59 83 20 25 0 0 0 chr6 158470478 158470503 -30809051 + AT_rich Low_complexity Low_complexity 1 25 0 838 212 163 46 chr6 158470639 158470988 -30808566 - MLT1B LTR MaLR 0 390 1 1530 148 95 49 chr6 158471062 158471331 -30808223 - MLT1B LTR MaLR -50 340 52 7103 122 82 3 chr6 158471331 158472471 -30807083 + Tigger3b DNA MER2_type 2 1230 -1 1530 148 95 49 chr6 158472471 158472526 -30807028 - MLT1B LTR MaLR -338 52 1 28 29 0 0 chr6 158473699 158473734 -30805820 + AT_rich Low_complexity Low_complexity 1 35 0 243 61 0 0 chr6 158474069 158474102 -30805452 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1483 165 28 12 chr6 158474110 158474364 -30805190 - AluJo SINE Alu -54 258 1 686 306 86 34 chr6 158474935 158475285 -30804269 - L2 LINE L2 0 3313 2946 3395 263 102 31 chr6 158475305 158476381 -30803173 - L2 LINE L2 0 3313 2101 1957 73 0 12 chr6 158476381 158476628 -30802926 + AluSq SINE Alu 8 251 -62 3395 263 102 31 chr6 158476628 158477052 -30802502 - L2 LINE L2 -1212 2101 1708 207 114 0 0 chr6 158477138 158477173 -30802381 + (TG)n Simple_repeat Simple_repeat 2 36 0 812 329 101 11 chr6 158477184 158477552 -30802002 - L2 LINE L2 -2139 1175 775 672 198 40 62 chr6 158477552 158477729 -30801825 - L2 LINE L2 -856 2458 2286 374 302 179 12 chr6 158477766 158478018 -30801536 - L2 LINE L2 -2519 795 502 417 294 33 46 chr6 158479779 158479932 -30799622 + MIR SINE MIR 4 154 -108 1922 146 3 10 chr6 158482411 158482720 -30796834 - AluJo SINE Alu -5 307 1 1500 177 47 40 chr6 158483296 158483595 -30795959 - AluJb SINE Alu -9 303 3 1841 182 3 0 chr6 158484776 158485072 -30794482 - AluJo SINE Alu -15 297 1 427 220 220 8 chr6 158485665 158485954 -30793600 + MLT1L LTR MaLR 203 578 -37 28 29 0 0 chr6 158485968 158486003 -30793551 + AT_rich Low_complexity Low_complexity 1 35 0 802 171 0 0 chr6 158486009 158486138 -30793416 - FRAM SINE Alu -28 148 20 670 238 145 4 chr6 158486994 158487221 -30792333 + MER34 LTR ERV1 27 285 -257 333 209 30 0 chr6 158487231 158487298 -30792256 + MER34 LTR ERV1 472 540 -2 252 118 0 0 chr6 158487478 158487512 -30792042 - Alu SINE Alu -258 44 11 1829 100 0 12 chr6 158487512 158487761 -30791793 + AluSx SINE Alu 56 301 -11 219 139 0 0 chr6 158488665 158488701 -30790853 + (CAG)n Simple_repeat Simple_repeat 3 38 0 384 175 15 161 chr6 158489291 158489380 -30790174 - MER5A DNA MER1_type -72 117 53 2401 78 10 0 chr6 158489380 158489688 -30789866 + AluY SINE Alu 1 311 0 384 175 15 161 chr6 158489688 158489735 -30789819 - MER5A DNA MER1_type -136 53 1 2010 112 3 41 chr6 158489873 158490215 -30789339 - AluSx SINE Alu 0 331 1 239 259 179 9 chr6 158490442 158490554 -30789000 + L2 LINE L2 3133 3263 -9 1126 151 112 5 chr6 158490846 158491051 -30788503 - AluSg/x SINE Alu -17 295 69 241 288 0 50 chr6 158541392 158541472 -30738082 + L2 LINE L2 3188 3263 -9 716 285 50 41 chr6 158541647 158542089 -30737465 - L1ME4a LINE L1 -1 6120 5675 473 282 34 29 chr6 158542325 158542531 -30737023 + MIR SINE MIR 40 246 -16 1099 192 10 5 chr6 158542704 158542902 -30736652 + MER3 DNA MER1_type 5 203 -6 239 293 64 7 chr6 158543108 158543248 -30736306 + HAL1b LINE L1 1193 1340 -8 266 279 0 23 chr6 158543297 158543383 -30736171 - L1ME4a LINE L1 -482 5639 5556 2864 50 0 14 chr6 158543386 158543748 -30735806 + L1PA6 LINE L1 5524 5880 -274 1939 115 38 3 chr6 158543897 158544184 -30735370 - AluSc SINE Alu -3 306 10 1757 174 117 0 chr6 158544340 158544708 -30734846 - L1MB4 LINE L1 -6 6174 5764 283 292 11 0 chr6 158544708 158544797 -30734757 - Tigger8 DNA MER2_type -138 528 439 206 342 50 67 chr6 158544835 158544887 -30734667 - L2 LINE L2 -86 3186 3135 2580 126 48 12 chr6 158544887 158545300 -30734254 + MSTA LTR MaLR 1 428 0 206 342 50 67 chr6 158545300 158545545 -30734009 - L2 LINE L2 -137 3135 2894 184 307 40 87 chr6 158546504 158546549 -30733005 + L2 LINE L2 2818 2864 -408 396 0 0 0 chr6 158546549 158546593 -30732961 + (CA)n Simple_repeat Simple_repeat 2 45 0 184 307 40 87 chr6 158546593 158546824 -30732730 + L2 LINE L2 2864 3081 -191 533 89 114 0 chr6 158547285 158547364 -30732190 + 5S rRNA rRNA 1 88 -33 454 306 124 5 chr6 158550358 158550551 -30729003 - MIR SINE MIR 0 262 47 469 224 143 37 chr6 158551016 158551177 -30728377 + MER5B DNA MER1_type 1 178 0 254 254 333 0 chr6 158551185 158551311 -30728243 - MER5A DNA MER1_type 0 189 22 324 200 82 55 chr6 158552657 158552767 -30726787 - MIR SINE MIR -71 191 79 228 35 0 0 chr6 158552888 158552917 -30726637 + (TG)n Simple_repeat Simple_repeat 2 30 0 1713 115 63 19 chr6 158552918 158553187 -30726367 - AluSx SINE Alu -31 281 1 29 90 0 0 chr6 158553713 158553791 -30725763 + GC_rich Low_complexity Low_complexity 1 78 0 26 118 0 0 chr6 158553913 158554065 -30725489 + GC_rich Low_complexity Low_complexity 1 152 0 425 202 98 91 chr6 158554714 158554990 -30724564 - LTR48 LTR ERV1 0 787 365 1835 82 0 102 chr6 158555147 158555440 -30724114 - AluSq SINE Alu -30 283 21 480 286 8 23 chr6 158555448 158555581 -30723973 - MER34 LTR ERV1 -411 131 1 405 0 0 0 chr6 158556167 158556212 -30723342 + (CA)n Simple_repeat Simple_repeat 2 46 0 1325 195 4 30 chr6 158556353 158556615 -30722939 + AluJo SINE Alu 1 255 -57 436 214 161 21 chr6 158556716 158556908 -30722646 - L1MC5 LINE L1 -246 7715 7497 452 224 92 26 chr6 158557636 158557788 -30721766 + MIR SINE MIR 28 189 -73 571 285 74 53 chr6 158558170 158558643 -30720911 + HSATI Satellite Satellite 77 559 -18 2008 132 134 65 chr6 158560288 158560734 -30718820 + MER31A LTR ERV1 1 477 -8 266 247 0 32 chr6 158560955 158561048 -30718506 + L2 LINE L2 2718 2807 -507 401 227 241 37 chr6 158561068 158561284 -30718270 + L2 LINE L2 2926 3185 -128 2646 174 38 21 chr6 158561295 158561824 -30717730 + MER67A LTR ERV1 6 543 0 208 189 0 0 chr6 158561870 158561907 -30717647 + L2 LINE L2 3268 3304 -9 2001 118 73 0 chr6 158562130 158562417 -30717137 - AluSx SINE Alu -4 308 1 21 36 0 0 chr6 158563558 158563586 -30715968 + AT_rich Low_complexity Low_complexity 1 28 0 1224 175 33 19 chr6 158563595 158563806 -30715748 + AluJb SINE Alu 85 298 -14 1045 106 0 0 chr6 158564107 158564249 -30715305 + AluSg/x SINE Alu 166 307 -3 252 57 0 29 chr6 158564475 158564510 -30715044 + tRNA-Gly-GGA tRNA tRNA 3 36 -39 427 127 16 0 chr6 158564547 158564610 -30714944 - FLAM_A SINE Alu -59 83 20 26 0 0 0 chr6 158564757 158564783 -30714771 + AT_rich Low_complexity Low_complexity 1 26 0 734 212 163 46 chr6 158564919 158565268 -30714286 - MLT1B LTR MaLR 0 390 1 1540 145 95 49 chr6 158565342 158565611 -30713943 - MLT1B LTR MaLR -50 340 52 6733 122 82 3 chr6 158565611 158566751 -30712803 + Tigger3b DNA MER2_type 2 1230 -1 1540 145 95 49 chr6 158566751 158566806 -30712748 - MLT1B LTR MaLR -338 52 1 28 29 0 0 chr6 158567979 158568014 -30711540 + AT_rich Low_complexity Low_complexity 1 35 0 243 61 0 0 chr6 158568349 158568382 -30711172 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1494 165 28 12 chr6 158568390 158568644 -30710910 - AluJo SINE Alu -54 258 1 638 287 81 39 chr6 158569215 158569522 -30710032 - L2 LINE L2 0 3313 2994 1731 261 118 28 chr6 158569586 158570558 -30708996 - L2 LINE L2 0 3313 2255 240 240 120 0 chr6 158570660 158570735 -30708819 - L2 LINE L2 -1698 1616 1533 207 114 0 0 chr6 158570759 158570794 -30708760 + (TG)n Simple_repeat Simple_repeat 2 36 0 822 326 101 11 chr6 158570805 158571173 -30708381 - L2 LINE L2 -2139 1175 775 670 215 34 57 chr6 158571173 158571350 -30708204 - L2 LINE L2 -856 2458 2286 381 277 163 12 chr6 158571387 158571639 -30707915 - L2 LINE L2 -2519 795 502 417 294 33 46 chr6 158573400 158573553 -30706001 + MIR SINE MIR 4 154 -108 1913 146 3 10 chr6 158576032 158576340 -30703214 - AluJo SINE Alu -6 306 1 1483 179 47 40 chr6 158576916 158577213 -30702341 - AluJb SINE Alu -11 301 3 1841 182 3 0 chr6 158578394 158578690 -30700864 - AluJo SINE Alu -15 297 1 427 220 220 8 chr6 158579283 158579572 -30699982 + MLT1L LTR MaLR 203 578 -37 27 0 0 0 chr6 158579586 158579613 -30699941 + AT_rich Low_complexity Low_complexity 1 27 0 839 178 0 0 chr6 158579627 158579756 -30699798 - FRAM SINE Alu -28 148 20 670 238 145 4 chr6 158580511 158580738 -30698816 + MER34 LTR ERV1 27 285 -257 333 209 30 0 chr6 158580748 158580815 -30698739 + MER34 LTR ERV1 472 540 -2 252 118 0 0 chr6 158580995 158581029 -30698525 - Alu SINE Alu -257 44 11 1829 100 0 12 chr6 158581029 158581278 -30698276 + AluSx SINE Alu 56 301 -11 34 0 0 0 chr6 158581922 158581956 -30697598 + AT_rich Low_complexity Low_complexity 1 34 0 2092 236 29 51 chr6 158584303 158584934 -30694620 + L1ME2 LINE L1 5548 6164 0 186 300 71 29 chr6 158585281 158585351 -30694203 + L3 LINE CR1 9 81 -1496 1178 199 208 21 chr6 158585960 158586296 -30693258 + MLT1D LTR MaLR 107 505 0 4447 172 129 24 chr6 158586303 158586433 -30693121 + L1MD2 LINE L1 5188 5303 -1056 1805 182 150 3 chr6 158586433 158586807 -30692747 - MSTB1 LTR MaLR 0 432 4 4447 172 129 24 chr6 158586807 158587546 -30692008 + L1MD2 LINE L1 5303 6194 -165 330 87 0 0 chr6 158587546 158587592 -30691962 + (CA)n Simple_repeat Simple_repeat 1 46 0 4447 172 129 24 chr6 158587592 158587777 -30691777 + L1MD2 LINE L1 6194 6358 -1 203 331 65 16 chr6 158587783 158587961 -30691593 - L2 LINE L2 -1207 2107 1851 630 235 88 37 chr6 158588089 158588306 -30691248 - MIR SINE MIR -1 261 34 254 196 0 0 chr6 158588309 158588355 -30691199 - L2 LINE L2 0 3313 3268 646 143 0 0 chr6 158588533 158588624 -30690930 + FRAM SINE Alu 72 162 -14 2332 111 3 9 chr6 158588626 158588941 -30690613 + AluSq SINE Alu 1 313 0 1165 144 123 30 chr6 158590809 158591045 -30688509 + Tigger7 DNA MER2_type 2234 2491 0 2103 142 7 0 chr6 158591145 158591455 -30688099 - AluJb SINE Alu 0 312 1 410 245 0 11 chr6 158591898 158591992 -30687562 + MER5A DNA MER1_type 9 101 -88 200 269 0 0 chr6 158593775 158593827 -30685727 + (TGGA)n Simple_repeat Simple_repeat 2 53 0 1913 195 8 43 chr6 158593838 158594213 -30685341 + MLT1A2 LTR MaLR 1 362 -12 420 137 29 0 chr6 158594251 158594353 -30685201 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 430 274 150 0 chr6 158594764 158594917 -30684637 - MARNA DNA Mariner -11 575 400 295 344 0 0 chr6 158595044 158595137 -30684417 - MARNA DNA Mariner -433 153 61 1705 174 3 39 chr6 158595163 158595468 -30684086 - AluJo SINE Alu -16 296 3 268 340 57 21 chr6 158596511 158596652 -30682902 + MIR3 SINE MIR 3 148 -60 2104 135 3 3 chr6 158596969 158597273 -30682281 + AluSx SINE Alu 1 304 -8 378 367 29 14 chr6 158597408 158597547 -30682007 - L2 LINE L2 0 3272 3132 284 229 10 73 chr6 158597635 158597731 -30681823 - MIR SINE MIR -66 196 107 884 116 7 14 chr6 158597804 158597942 -30681612 - MER39 LTR ERV1 0 707 571 1645 189 124 6 chr6 158597977 158598299 -30681255 - MER39 LTR ERV1 -347 360 1 197 301 60 120 chr6 158598453 158598819 -30680735 + L2 LINE L2 2829 3172 -100 404 232 12 0 chr6 158599191 158599273 -30680281 + L2 LINE L2 3230 3312 -1 316 282 77 66 chr6 158599942 158600123 -30679431 - MER91A DNA MER1_type -13 183 1 206 320 62 31 chr6 158600777 158600874 -30678680 + L2 LINE L2 3206 3305 -8 1023 406 3 52 chr6 158601123 158601431 -30678123 + AluJb SINE Alu 1 293 -9 215 200 0 0 chr6 158601568 158601603 -30677951 + (TG)n Simple_repeat Simple_repeat 2 36 0 254 87 0 0 chr6 158601603 158601649 -30677905 + LTR66 LTR ERVL 394 439 -171 348 197 0 86 chr6 158601657 158601793 -30677761 + Alu SINE Alu 240 302 0 445 272 98 60 chr6 158602532 158602753 -30676801 - L2 LINE L2 0 3313 3102 2461 31 45 0 chr6 158602753 158603040 -30676514 + AluY SINE Alu 1 300 -11 445 272 98 60 chr6 158603040 158603422 -30676132 - L2 LINE L2 -211 3102 2620 1310 168 14 5 chr6 158603460 158603680 -30675874 - AluJo SINE Alu -90 222 1 1825 143 3 32 chr6 158603712 158604020 -30675534 - AluJo SINE Alu -13 299 1 817 243 65 48 chr6 158604025 158604425 -30675129 - L1MC5 LINE L1 -45 7916 7510 2057 126 0 7 chr6 158604778 158605111 -30674443 - AluSx SINE Alu 0 312 5 296 364 77 0 chr6 158605560 158605738 -30673816 + MIR SINE MIR 5 196 -63 596 316 78 30 chr6 158606539 158606900 -30672654 + MLT1J2 LTR MaLR 68 445 -5 287 277 0 0 chr6 158607015 158607080 -30672474 - MER113 DNA MER1_type? -3 518 454 673 268 38 10 chr6 158607101 158607310 -30672244 - MER113 DNA MER1_type? -306 215 1 618 229 19 79 chr6 158608411 158608625 -30670929 - L1MC4a LINE L1 0 7808 7608 841 201 65 5 chr6 158608625 158608824 -30670730 - L1MC4a LINE L1 -672 7136 6926 1140 149 27 50 chr6 158608827 158609048 -30670506 - AluJo SINE Alu -14 298 83 882 243 0 10 chr6 158609049 158609255 -30670299 - L1MC4a LINE L1 -880 6928 6725 186 71 0 0 chr6 158609927 158609955 -30669599 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2061 128 0 3 chr6 158609981 158610269 -30669285 - AluSx SINE Alu -25 287 1 254 253 27 0 chr6 158610414 158610489 -30669065 - L1MD3 LINE L1 -11 7984 7908 247 306 159 18 chr6 158610618 158610788 -30668766 + MLT1K LTR MaLR 76 269 -319 277 213 130 46 chr6 158610879 158610987 -30668567 + MLT1K LTR MaLR 408 524 -64 1798 243 120 10 chr6 158611324 158611823 -30667731 - MLT1E LTR MaLR 0 593 40 390 176 15 154 chr6 158612226 158612315 -30667239 - MER5A DNA MER1_type -72 117 52 2416 75 10 0 chr6 158612315 158612623 -30666931 + AluY SINE Alu 1 311 0 390 176 15 154 chr6 158612623 158612669 -30666885 - MER5A DNA MER1_type -137 52 1 1996 115 3 41 chr6 158612807 158613141 -30666413 - AluSx SINE Alu 0 323 1 239 259 179 9 chr6 158613368 158613480 -30666074 + L2 LINE L2 3133 3263 -9 1576 151 85 4 chr6 158613773 158614044 -30665510 - AluSx SINE Alu -17 295 3 559 226 64 27 chr6 158615556 158615750 -30663804 + MIR SINE MIR 5 208 -54 700 200 15 35 chr6 158616835 158617108 -30662446 + GA-rich Low_complexity Low_complexity 1 267 0 283 235 0 0 chr6 158617108 158617159 -30662395 + polypurine Low_complexity Low_complexity 1 51 0 215 261 9 52 chr6 158617185 158617300 -30662254 + A-rich Low_complexity Low_complexity 4 113 0 251 110 110 25 chr6 158617814 158617932 -30661622 + (TATG)n Simple_repeat Simple_repeat 3 130 0 1026 220 56 41 chr6 158618012 158618280 -30661274 + ORSL DNA AcHobo 4 275 0 364 189 67 128 chr6 158618463 158618627 -30660927 - MIR SINE MIR -18 244 91 1804 152 4 0 chr6 158618786 158619063 -30660491 - AluJb SINE Alu -30 282 5 532 313 29 78 chr6 158619101 158619446 -30660108 - L2 LINE L2 -17 3255 2928 1054 158 5 15 chr6 158620261 158620457 -30659097 + L1PBa LINE L1 1 194 -6669 805 135 0 71 chr6 158620457 158620598 -30658956 + MLT1A1 LTR MaLR 189 319 -46 955 211 18 0 chr6 158620696 158620867 -30658687 - FAM SINE Alu -1 174 1 246 364 93 0 chr6 158621124 158621253 -30658301 - L2 LINE L2 0 3272 3132 674 219 104 72 chr6 158621340 158621591 -30657963 - MIR SINE MIR -3 259 1 240 307 73 22 chr6 158621772 158621909 -30657645 - L2 LINE L2 -556 2758 2615 278 307 178 0 chr6 158622139 158622240 -30657314 + L2 LINE L2 3154 3272 0 225 224 0 17 chr6 158622241 158622299 -30657255 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 468 305 84 30 chr6 158622569 158622716 -30656838 + L2 LINE L2 2996 3134 -179 240 35 0 0 chr6 158622716 158622745 -30656809 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 468 305 84 30 chr6 158622745 158622766 -30656788 + L2 LINE L2 3134 3152 -161 1795 175 65 81 chr6 158622766 158623231 -30656323 - MLT1D LTR MaLR -4 501 43 2439 81 3 0 chr6 158623231 158623528 -30656026 - AluSg SINE Alu -12 298 1 1795 175 65 81 chr6 158623528 158623571 -30655983 - MLT1D LTR MaLR -462 43 1 468 305 84 30 chr6 158623571 158623699 -30655855 + L2 LINE L2 3152 3309 -4 2642 106 5 8 chr6 158623789 158624165 -30655389 + THE1C LTR MaLR 1 375 0 249 293 113 8 chr6 158624824 158624957 -30654597 - MIR SINE MIR -13 249 103 510 167 0 50 chr6 158625182 158625302 -30654252 - MER96B DNA MER1_type? -7 410 297 228 55 55 36 chr6 158625407 158625462 -30654092 + MER96B DNA MER1_type? 241 296 -121 1401 217 111 4 chr6 158625597 158626108 -30653446 - L1MD3 LINE L1 -1672 6113 5534 3885 88 9 2 chr6 158626312 158626867 -30652687 + L1MA5A LINE L1 5738 6296 -1 933 209 19 67 chr6 158627655 158627726 -30651828 - L1MA6 LINE L1 -52 6248 6175 1731 179 7 10 chr6 158627726 158628022 -30651532 - AluJb SINE Alu -17 295 1 933 209 19 67 chr6 158628022 158628266 -30651288 - L1MA6 LINE L1 -125 6175 5948 193 313 15 0 chr6 158628453 158628520 -30651034 - MIR3 SINE MIR -3 205 138 205 167 0 0 chr6 158629416 158629452 -30650102 + T-rich Low_complexity Low_complexity 1 36 0 2731 10 0 3 chr6 158629694 158629998 -30649556 - AluY SINE Alu -8 303 1 294 305 34 51 chr6 158630284 158630402 -30649152 + L2 LINE L2 3021 3136 -136 205 276 62 120 chr6 158630479 158630671 -30648883 - L2 LINE L2 -57 3215 3035 3905 148 3 0 chr6 158630703 158631333 -30648221 + L1PB3 LINE L1 5522 6153 -1 2157 148 52 10 chr6 158631354 158631754 -30647800 + MSTC LTR MaLR 12 428 0 233 319 22 77 chr6 158631754 158631936 -30647618 - L2 LINE L2 -236 3036 2865 544 211 111 74 chr6 158631944 158632375 -30647179 - LTR48 LTR ERV1 -9 778 249 867 168 102 0 chr6 158632384 158632551 -30647003 - MER34C LTR ERV1 -394 191 8 205 393 79 30 chr6 158632605 158632872 -30646682 - L2 LINE L2 -512 2802 2523 591 331 75 41 chr6 158632891 158633543 -30646011 - L2 LINE L2 -916 2398 1725 223 190 35 35 chr6 158633558 158633616 -30645938 + L2 LINE L2 3210 3267 -5 2338 113 3 0 chr6 158635342 158635653 -30643901 + AluSx SINE Alu 1 312 0 203 392 52 72 chr6 158635966 158636313 -30643241 - L2 LINE L2 -30 3242 2903 449 319 74 0 chr6 158637176 158637311 -30642243 + MER91A DNA MER1_type 1 145 -51 257 247 11 21 chr6 158637382 158637576 -30641978 + GA-rich Low_complexity Low_complexity 1 191 0 2154 128 0 0 chr6 158637653 158637951 -30641603 - AluJb SINE Alu -14 298 1 1232 247 76 36 chr6 158638483 158638933 -30640621 - MLT1E LTR MaLR 0 593 126 2376 50 0 0 chr6 158638951 158639260 -30640294 + AluY SINE Alu 1 309 0 1308 86 0 6 chr6 158639260 158639456 -30640098 + AluSg/x SINE Alu 124 318 0 315 366 36 5 chr6 158639481 158639675 -30639879 - L2 LINE L2 -2518 796 597 462 267 34 23 chr6 158639696 158639872 -30639682 + L1MEd LINE L1 8 185 -5934 185 156 0 0 chr6 158640020 158640052 -30639502 - L2 LINE L2 -2710 604 573 400 117 0 33 chr6 158640064 158640124 -30639430 + AluJb SINE Alu 3 60 -252 1536 120 0 13 chr6 158640352 158640577 -30638977 + AluJb SINE Alu 58 279 -33 762 279 38 25 chr6 158640799 158641114 -30638440 + L1MEd LINE L1 458 776 -5343 275 269 90 40 chr6 158641182 158641383 -30638171 + L1ME LINE L1 5565 5775 -346 21 0 0 0 chr6 158641683 158641704 -30637850 + AT_rich Low_complexity Low_complexity 1 21 0 225 424 8 8 chr6 158642521 158642639 -30636915 + L3 LINE CR1 1048 1165 -412 * 252 363 44 0 chr6 158642625 158642738 -30636816 + L2 LINE L2 3155 3272 0 263 208 281 0 chr6 158644376 158644472 -30635082 + L2 LINE L2 3190 3312 -1 2236 188 43 6 chr6 158645179 158645648 -30633906 - MER66B LTR ERV1 0 486 1 3405 100 8 12 chr6 158645796 158646306 -30633248 - MER75 DNA T2_type 0 514 7 2163 100 7 0 chr6 158646479 158646802 -30632752 + AluSp SINE Alu 1 325 0 483 301 77 11 chr6 158647326 158647705 -30631849 + L1M4 LINE L1 3102 3505 -2641 2027 165 0 49 chr6 158647765 158647927 -30631627 - MLT1B LTR MaLR -1 389 221 2222 113 135 5 chr6 158647927 158648306 -30631248 + MSTA LTR MaLR 1 428 0 2027 165 0 49 chr6 158648306 158648548 -30631006 - MLT1B LTR MaLR -169 221 5 231 325 40 7 chr6 158648611 158648762 -30630792 + L1M4 LINE L1 3661 3816 -2330 462 323 44 53 chr6 158650530 158650756 -30628798 + MER115 DNA AcHobo 123 346 -347 887 182 0 0 chr6 158650872 158651037 -30628517 + MER115 DNA AcHobo 529 693 0 355 115 0 0 chr6 158651399 158651451 -30628103 + Tigger4(Zombi) DNA MER2_type 2578 2629 -102 517 128 49 10 chr6 158651513 158651615 -30627939 + AluSq/x SINE Alu 1 106 -206 246 364 10 10 chr6 158651943 158652042 -30627512 - L2 LINE L2 -450 2864 2766 280 313 96 0 chr6 158652078 158652161 -30627393 - MER5A DNA MER1_type -28 161 71 257 264 58 11 chr6 158652159 158652246 -30627308 - L2 LINE L2 0 3313 3223 * 2200 46 0 76 chr6 158652256 158652589 -30626965 - AluY SINE Alu 0 310 1 294 297 86 74 chr6 158652688 158652957 -30626597 - L2 LINE L2 -555 2759 2488 477 317 67 18 chr6 158653179 158653343 -30626211 - MIR3 SINE MIR -12 196 25 1207 203 32 51 chr6 158653540 158653856 -30625698 - MLT1B LTR MaLR -29 361 52 24 32 0 0 chr6 158655552 158655583 -30623971 + AT_rich Low_complexity Low_complexity 1 31 0 436 293 48 0 chr6 158655736 158655883 -30623671 - L1ME4a LINE L1 -237 5884 5731 706 257 251 28 chr6 158656461 158656893 -30622661 - L2 LINE L2 -1 3312 2782 189 288 135 27 chr6 158657217 158657328 -30622226 - MIR3 SINE MIR -1 207 85 214 307 158 10 chr6 158657435 158657536 -30622018 + MIR SINE MIR 135 250 -12 2394 101 3 0 chr6 158657657 158657965 -30621589 + AluSp SINE Alu 1 309 -4 1255 249 86 26 chr6 158658012 158658441 -30621113 - LTR16B LTR ERVL 0 464 10 2001 143 0 3 chr6 158658738 158659031 -30620523 + AluJb SINE Alu 1 292 -20 296 276 103 0 chr6 158659629 158659745 -30619809 - L1ME4a LINE L1 -34 6087 5960 23 0 0 0 chr6 158659828 158659851 -30619703 + AT_rich Low_complexity Low_complexity 1 23 0 377 272 64 8 chr6 158660842 158660967 -30618587 - MIR SINE MIR -32 230 99 467 198 0 0 chr6 158662487 158662578 -30616976 - AluJ/FRAM SINE Alu 0 312 222 732 157 92 27 chr6 158662966 158663151 -30616403 + MER5C DNA MER1_type 127 323 -1 259 299 51 37 chr6 158663164 158663230 -30616324 + L1MC4a LINE L1 5776 5840 -1968 2780 156 84 12 chr6 158663230 158663743 -30615811 + MER44D DNA MER2_type 1 605 0 259 299 51 37 chr6 158663743 158663890 -30615664 + L1MC4a LINE L1 5840 5992 -1816 327 310 145 28 chr6 158663916 158664171 -30615383 + L1MC4a LINE L1 6054 6338 -1470 818 240 34 92 chr6 158664387 158664443 -30615111 + L1MC5 LINE L1 6565 6623 -1185 189 0 0 0 chr6 158664443 158664464 -30615090 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 818 240 34 92 chr6 158664464 158664943 -30614611 + L1MC5 LINE L1 6623 6954 -854 21 36 0 0 chr6 158665092 158665120 -30614434 + AT_rich Low_complexity Low_complexity 1 28 0 424 242 10 0 chr6 158665323 158665422 -30614132 + MIR SINE MIR 156 255 -7 207 0 0 0 chr6 158665715 158665738 -30613816 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7070 45 0 0 chr6 158665742 158666960 -30612594 - L1PA5 LINE L1 -8 6146 4946 2174 108 0 0 chr6 158667044 158667323 -30612231 - AluSc SINE Alu -30 279 1 22 56 0 0 chr6 158668546 158668582 -30610972 + AT_rich Low_complexity Low_complexity 1 36 0 329 269 164 18 chr6 158670505 158670676 -30608878 + HAL1 LINE L1 1217 1412 -1095 1242 179 23 39 chr6 158670698 158670955 -30608599 + AluJo SINE Alu 40 292 -20 1471 160 3 45 chr6 158670957 158671244 -30608310 + AluJo SINE Alu 37 311 -1 2319 78 0 36 chr6 158671244 158671552 -30608002 + AluSg SINE Alu 1 297 -13 28 0 0 0 chr6 158672023 158672051 -30607503 + AT_rich Low_complexity Low_complexity 1 28 0 482 318 140 25 chr6 158672205 158672448 -30607106 + L2 LINE L2 1848 2148 -1166 1823 173 3 10 chr6 158672448 158672754 -30606800 + AluJb SINE Alu 3 306 -6 482 318 140 25 chr6 158672754 158672875 -30606679 + L2 LINE L2 2148 2254 -1060 2811 265 147 45 chr6 158672960 158674710 -30604844 - L2 LINE L2 0 3313 1380 554 183 35 9 chr6 158674759 158674874 -30604680 - MIR SINE MIR 0 262 145 2347 200 70 4 chr6 158674958 158675504 -30604050 + L1MB8 LINE L1 5595 6176 -2 246 380 33 8 chr6 158675664 158675785 -30603769 + MIR3 SINE MIR 15 138 -70 24 85 0 0 chr6 158676934 158676993 -30602561 + AT_rich Low_complexity Low_complexity 1 59 0 1600 170 4 8 chr6 158677513 158677778 -30601776 + AluJb SINE Alu 13 276 -36 186 167 71 0 chr6 158677921 158678005 -30601549 + (TA)n Simple_repeat Simple_repeat 1 90 0 496 249 138 22 chr6 158678055 158678236 -30601318 - MIR SINE MIR 0 262 61 243 260 113 17 chr6 158678295 158678472 -30601082 + L1ME4a LINE L1 3786 3979 -2167 25 0 0 0 chr6 158678476 158678501 -30601053 + AT_rich Low_complexity Low_complexity 1 25 0 690 188 4 15 chr6 158678502 158678755 -30600799 + AluJo SINE Alu 1 301 -11 249 331 32 0 chr6 158678779 158678903 -30600651 + L1ME4a LINE L1 4033 4160 -1986 320 359 223 16 chr6 158679966 158680507 -30599047 - L2 LINE L2 -16 3297 2631 472 325 5 20 chr6 158680523 158680723 -30598831 - L2 LINE L2 0 3313 3117 262 222 0 19 chr6 158681030 158681084 -30598470 - L2 LINE L2 -678 2636 2584 301 275 46 9 chr6 158681311 158681420 -30598134 + L1ME4a LINE L1 5386 5498 -668 322 267 67 72 chr6 158681472 158681667 -30597887 + L1ME4a LINE L1 5695 5888 -233 275 269 103 21 chr6 158681713 158681858 -30597696 + L1ME4a LINE L1 5956 6112 -9 986 188 61 14 chr6 158683564 158683777 -30595777 - MER58A DNA MER1_type 0 224 2 566 219 53 0 chr6 158684068 158684182 -30595372 + MER58A DNA MER1_type 15 134 0 1655 202 149 10 chr6 158685017 158685432 -30594122 - Charlie4a DNA MER1_type 0 508 36 182 105 26 0 chr6 158686279 158686317 -30593237 + (TA)n Simple_repeat Simple_repeat 2 40 0 965 156 38 38 chr6 158688184 158688370 -30591184 + AluJ SINE Alu 121 306 -6 304 303 63 132 chr6 158688423 158688710 -30590844 - L2 LINE L2 -4 3268 3002 1304 147 79 5 chr6 158689306 158689597 -30589957 + MER46B DNA MER2_type 1 236 0 303 302 103 16 chr6 158689623 158689749 -30589805 + L2 LINE L2 3132 3268 -4 1978 161 3 0 chr6 158691857 158692167 -30587387 + AluJo SINE Alu 1 311 -1 1693 193 107 50 chr6 158693365 158693842 -30585712 + MLT1D LTR MaLR 1 504 -1 330 171 9 144 chr6 158695130 158695241 -30584313 - MER102b DNA MER1_type -13 328 233 219 36 0 0 chr6 158696033 158696061 -30583493 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 701 239 56 20 chr6 158696274 158696471 -30583083 + MIR SINE MIR 47 250 -12 1139 154 31 9 chr6 158697195 158697422 -30582132 - L1MA4 LINE L1 -1 6299 6068 2235 118 0 3 chr6 158698163 158698468 -30581086 + AluSx SINE Alu 1 304 -8 1012 139 30 0 chr6 158698534 158698699 -30580855 - MER31A LTR ERV1 -8 477 308 2081 126 10 3 chr6 158699117 158699427 -30580127 + AluSx SINE Alu 1 312 0 2164 107 3 35 chr6 158699902 158700220 -30579334 + AluSx SINE Alu 3 310 -2 766 137 0 0 chr6 158701136 158701267 -30578287 - L1MA7 LINE L1 0 6291 6161 1042 257 51 10 chr6 158701297 158701608 -30577946 - MER46C DNA MER2_type -1 337 14 24 53 0 0 chr6 158702077 158702115 -30577439 + AT_rich Low_complexity Low_complexity 1 38 0 647 316 15 0 chr6 158706773 158706969 -30572585 + MIR SINE MIR 56 254 -8 211 311 27 0 chr6 158707908 158707982 -30571572 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 2263 71 17 0 chr6 158708282 158708578 -30570976 - AluY SINE Alu -10 301 1 2101 127 0 3 chr6 158709243 158709534 -30570020 + AluSg SINE Alu 1 290 -20 266 200 36 0 chr6 158709569 158709624 -30569930 + MER103 DNA DNA 90 146 -20 199 346 60 23 chr6 158710352 158710485 -30569069 - MIR SINE MIR -14 248 111 758 320 73 27 chr6 158711843 158712281 -30567273 - L2 LINE L2 0 3313 2856 182 200 0 123 chr6 158712367 158712432 -30567122 - L2 LINE L2 -640 2674 2618 524 236 34 39 chr6 158712710 158712888 -30566666 + MER5B DNA MER1_type 2 178 0 235 269 19 0 chr6 158712895 158712947 -30566607 + polypyrimidine Low_complexity Low_complexity 2 54 0 256 287 46 0 chr6 158712981 158713068 -30566486 - L2 LINE L2 -1077 2237 2147 303 28 0 0 chr6 158713560 158713596 -30565958 + (CA)n Simple_repeat Simple_repeat 2 37 0 1077 158 0 33 chr6 158713777 158713960 -30565594 + AluSg/x SINE Alu 117 293 -19 32 81 0 0 chr6 158714153 158714227 -30565327 + AT_rich Low_complexity Low_complexity 1 74 0 713 266 53 29 chr6 158714479 158714723 -30564831 - L2 LINE L2 -8 3305 3056 2386 71 0 0 chr6 158715043 158715339 -30564215 + AluY SINE Alu 1 296 -15 408 338 31 14 chr6 158715553 158715775 -30563779 + MARNA DNA Mariner 2 227 -359 328 263 17 34 chr6 158716041 158716159 -30563395 + MARNA DNA Mariner 216 331 -255 2558 168 8 31 chr6 158716290 158716394 -30563160 - L1MB5 LINE L1 -1 6173 6068 2050 88 0 4 chr6 158716394 158716655 -30562899 - AluSg SINE Alu -17 293 34 2558 168 8 31 chr6 158716655 158717062 -30562492 - L1MB5 LINE L1 -106 6068 5674 2434 174 49 21 chr6 158717063 158717529 -30562025 - MLT1D LTR MaLR -3 502 24 423 0 0 0 chr6 158717712 158717759 -30561795 + (TA)n Simple_repeat Simple_repeat 1 47 0 222 269 167 0 chr6 158717766 158717844 -30561710 + L2 LINE L2 3163 3253 -19 30 83 0 0 chr6 158718892 158718964 -30560590 + AT_rich Low_complexity Low_complexity 1 72 0 232 164 148 0 chr6 158719312 158719373 -30560181 + MIR SINE MIR 162 231 -31 1859 158 0 16 chr6 158719956 158720273 -30559281 - AluJo SINE Alu 0 312 1 1170 196 79 19 chr6 158721214 158721506 -30558048 - L1MC1 LINE L1 -6 6327 6041 2713 169 23 76 chr6 158721625 158722503 -30557051 - L1MC1 LINE L1 -552 5781 4924 863 270 169 27 chr6 158723832 158723959 -30555595 - L1MC4a LINE L1 -1927 5881 5773 315 0 0 0 chr6 158723959 158723994 -30555560 + (TG)n Simple_repeat Simple_repeat 2 36 0 863 270 169 27 chr6 158723994 158724415 -30555139 - L1MC4a LINE L1 -2035 5773 5255 2069 128 7 23 chr6 158724568 158724872 -30554682 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr6 158724930 158724952 -30554602 + AT_rich Low_complexity Low_complexity 1 22 0 245 95 0 24 chr6 158725968 158726010 -30553544 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 1502 230 156 29 chr6 158726126 158726652 -30552902 - MLT1E LTR MaLR 0 593 1 321 26 0 0 chr6 158726920 158726958 -30552596 + (CA)n Simple_repeat Simple_repeat 2 39 0 298 279 101 17 chr6 158727650 158727829 -30551725 + MARNA DNA Mariner 48 241 -345 394 366 44 3 chr6 158727939 158728234 -30551320 + L1M4 LINE L1 2518 2824 -3322 2004 176 28 20 chr6 158728316 158728708 -30550846 + Tigger3b DNA MER2_type 2 396 -835 1238 211 141 76 chr6 158729089 158729310 -30550244 + MLT1D LTR MaLR 1 206 -299 871 222 97 57 chr6 158729310 158729661 -30549893 - MLT1A1 LTR MaLR 0 365 1 1238 211 141 76 chr6 158729661 158729836 -30549718 + MLT1D LTR MaLR 206 368 -137 210 91 0 0 chr6 158729836 158729869 -30549685 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 2255 98 3 0 chr6 158729876 158730163 -30549391 - AluSp SINE Alu -25 288 1 1238 211 141 76 chr6 158730163 158730231 -30549323 + MLT1D LTR MaLR 373 505 0 2546 138 56 20 chr6 158730857 158731306 -30548248 + MLT1C LTR MaLR 1 465 -2 23 0 0 0 chr6 158732351 158732374 -30547180 + AT_rich Low_complexity Low_complexity 1 23 0 228 83 0 0 chr6 158732450 158732486 -30547068 + MLT1C LTR MaLR 274 309 -158 2050 70 0 4 chr6 158732586 158732844 -30546710 + AluY SINE Alu 44 300 -11 593 206 6 47 chr6 158732942 158733112 -30546442 + MER104 DNA Tc2 2 164 -16 1580 121 13 0 chr6 158733190 158733429 -30546125 - L1PB1 LINE L1 -3 6148 5907 2172 95 39 3 chr6 158733429 158733642 -30545912 + L1PB1 LINE L1 5566 5797 -354 207 114 0 0 chr6 158733642 158733677 -30545877 + (TA)n Simple_repeat Simple_repeat 1 35 0 2172 95 39 3 chr6 158733677 158733801 -30545753 + L1PB1 LINE L1 5797 5915 -236 324 323 67 45 chr6 158734072 158734341 -30545213 + L1M4 LINE L1 4882 5156 -990 440 299 61 7 chr6 158735578 158735725 -30543829 - MIR SINE MIR -93 169 15 703 315 63 25 chr6 158735766 158736312 -30543242 - L2 LINE L2 -7 3306 2738 315 218 0 0 chr6 158737110 158737211 -30542343 + (TG)n Simple_repeat Simple_repeat 1 101 0 6273 88 6 14 chr6 158737358 158738372 -30541182 + L1PA11 LINE L1 5153 6158 -16 23 0 0 0 chr6 158738372 158738395 -30541159 + AT_rich Low_complexity Low_complexity 1 23 0 794 206 19 0 chr6 158738421 158738581 -30540973 + MLT1B LTR MaLR 180 342 -48 261 0 0 0 chr6 158738905 158738934 -30540620 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 184 200 0 0 chr6 158739192 158739222 -30540332 - L2 LINE L2 -1723 1591 1562 2225 196 22 7 chr6 158740033 158740703 -30538851 + L1ME4a LINE L1 4791 5472 -712 277 314 12 0 chr6 158740839 158740925 -30538629 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 241 224 103 37 chr6 158740942 158741049 -30538505 + MER5B DNA MER1_type 64 177 -1 183 240 116 82 chr6 158743282 158743428 -30536126 + MIR3 SINE MIR 6 156 -52 22 35 0 0 chr6 158744457 158744486 -30535068 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr6 158744864 158744895 -30534659 + AT_rich Low_complexity Low_complexity 1 31 0 295 243 144 69 chr6 158745159 158745234 -30534320 + L1ME4a LINE L1 5538 5606 -515 2277 124 0 0 chr6 158745234 158745532 -30534022 + AluSx SINE Alu 1 298 -14 295 243 144 69 chr6 158745532 158745790 -30533764 + L1ME4a LINE L1 5606 5896 -225 2357 99 3 0 chr6 158745863 158746165 -30533389 - AluSg SINE Alu -3 307 5 22 0 0 0 chr6 158746572 158746594 -30532960 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 158746608 158746634 -30532920 + AT_rich Low_complexity Low_complexity 1 26 0 255 299 104 61 chr6 158747271 158747435 -30532119 - L2 LINE L2 -5 3267 3097 1594 297 110 21 chr6 158747783 158748780 -30530774 + L2 LINE L2 2234 3313 0 973 259 71 78 chr6 158748883 158749081 -30530473 - HAL1 LINE L1 -162 2345 2147 2043 113 7 17 chr6 158749081 158749381 -30530173 - AluSq SINE Alu -16 297 1 973 259 71 78 chr6 158749381 158749939 -30529615 - HAL1 LINE L1 -360 2147 1594 196 302 54 54 chr6 158750390 158750519 -30529035 - MER5B DNA MER1_type -27 151 23 287 304 52 35 chr6 158750396 158750511 -30529043 + MER5A DNA MER1_type 44 160 -29 349 200 0 27 chr6 158750563 158750638 -30528916 - Tigger5 DNA MER2_type 0 2323 2251 293 140 0 35 chr6 158750605 158750662 -30528892 - Tigger5 DNA MER2_type -2268 55 1 * 24 0 0 0 chr6 158750662 158750686 -30528868 + AT_rich Low_complexity Low_complexity 1 24 0 1933 186 18 23 chr6 158752211 158752599 -30526955 - MLT1B LTR MaLR -1 389 4 2391 103 0 0 chr6 158752610 158752922 -30526632 - AluSx SINE Alu 0 312 1 1071 212 5 22 chr6 158753247 158753469 -30526085 + AluJb SINE Alu 77 294 -18 714 146 11 38 chr6 158753469 158753654 -30525900 + GA-rich Low_complexity Low_complexity 1 180 0 23 0 0 0 chr6 158755414 158755437 -30524117 + AT_rich Low_complexity Low_complexity 1 23 0 397 298 61 23 chr6 158755856 158756049 -30523505 - MIR SINE MIR -57 205 7 230 296 80 32 chr6 158757173 158757298 -30522256 - L2 LINE L2 0 3313 3183 27 0 0 0 chr6 158757737 158757764 -30521790 + AT_rich Low_complexity Low_complexity 1 27 0 229 236 20 142 chr6 158758021 158758169 -30521385 + L2 LINE L2 3079 3208 -64 238 404 52 12 chr6 158758212 158758541 -30521013 + L2 LINE L2 282 623 -2691 232 348 94 45 chr6 158758902 158759169 -30520385 + L2 LINE L2 2226 2505 -809 2038 119 4 0 chr6 158759657 158759935 -30519619 + AluSx SINE Alu 1 279 -33 753 238 77 0 chr6 158761008 158761189 -30518365 + MIR SINE MIR 30 224 -38 486 288 106 31 chr6 158761270 158761430 -30518124 - MIR3 SINE MIR -5 203 32 2012 98 80 3 chr6 158761504 158761791 -30517763 - AluSc SINE Alu 0 309 1 306 308 158 8 chr6 158761893 158762013 -30517541 + MIR3 SINE MIR 1 138 -70 234 0 0 0 chr6 158762158 158762184 -30517370 + (T)n Simple_repeat Simple_repeat 1 26 0 272 200 133 0 chr6 158762319 158762409 -30517145 + L1ME3 LINE L1 5847 5948 -222 964 94 0 8 chr6 158762410 158762537 -30517017 + AluJb SINE Alu 1 126 -186 351 229 7 90 chr6 158762560 158762704 -30516850 + L1ME3 LINE L1 5934 6065 -97 390 21 0 0 chr6 158763461 158763508 -30516046 + (TG)n Simple_repeat Simple_repeat 1 47 0 1166 176 146 17 chr6 158763908 158764209 -30515345 - L1MC3 LINE L1 -1 7784 7445 2076 103 10 0 chr6 158764209 158764509 -30515045 - AluY SINE Alu -8 303 1 1126 140 6 0 chr6 158764512 158764676 -30514878 - AluSg/x SINE Alu -20 292 128 2496 66 0 7 chr6 158764678 158764980 -30514574 - AluY SINE Alu -11 300 1 960 218 99 0 chr6 158764981 158765224 -30514330 - L1MC3 LINE L1 -330 7455 7189 271 291 0 12 chr6 158765224 158765310 -30514244 - MLT1F1 LTR MaLR -442 125 41 2970 189 45 11 chr6 158765311 158766019 -30513535 - L1MC3 LINE L1 -684 7101 6370 2171 155 82 12 chr6 158767105 158767505 -30512049 - MSTA LTR MaLR 0 428 1 3213 226 126 44 chr6 158768797 158769795 -30509759 - L1MDa LINE L1 -5405 1135 48 2255 91 0 14 chr6 158769795 158770092 -30509462 + AluSx SINE Alu 1 293 -19 3213 226 126 44 chr6 158770092 158770126 -30509428 - L1MDa LINE L1 -6492 48 18 298 250 186 12 chr6 158770413 158770585 -30508969 - L1ME2 LINE L1 0 6164 5963 35 41 0 0 chr6 158771769 158771818 -30507736 + AT_rich Low_complexity Low_complexity 1 49 0 27 0 0 0 chr6 158771942 158771969 -30507585 + AT_rich Low_complexity Low_complexity 1 27 0 442 244 51 30 chr6 158772653 158772850 -30506704 + L1MC5 LINE L1 7731 7931 -30 270 272 126 10 chr6 158772984 158773087 -30506467 + MIR3 SINE MIR 81 195 -13 552 65 0 13 chr6 158773390 158773467 -30506087 + MADE1 DNA Mariner 5 80 0 183 42 0 0 chr6 158774238 158774262 -30505292 + (ATTTG)n Simple_repeat Simple_repeat 1 24 0 379 260 16 47 chr6 158774890 158775017 -30504537 - L2 LINE L2 0 3313 3191 1608 161 17 45 chr6 158775731 158776023 -30503531 - AluJb SINE Alu -28 284 1 214 365 58 49 chr6 158776467 158776815 -30502739 + L2 LINE L2 2832 3182 -90 1711 179 3 17 chr6 158776954 158777256 -30502298 - AluJb SINE Alu -14 298 1 21 36 0 0 chr6 158777288 158777316 -30502238 + AT_rich Low_complexity Low_complexity 1 28 0 777 307 8 35 chr6 158777588 158777845 -30501709 - MIR SINE MIR 0 262 13 2430 101 0 0 chr6 158778260 158778567 -30500987 - AluSx SINE Alu -5 307 1 2413 89 10 0 chr6 158778731 158779034 -30500520 - AluSx SINE Alu -6 306 1 189 222 0 0 chr6 158779111 158779156 -30500398 - MIR SINE MIR -138 124 80 2237 114 10 0 chr6 158779198 158779496 -30500058 - AluSx SINE Alu -11 301 1 424 290 83 51 chr6 158779564 158779840 -30499714 - L2 LINE L2 -33 3280 2996 1718 176 0 20 chr6 158779998 158780294 -30499260 - AluJo SINE Alu -19 293 4 382 207 74 58 chr6 158780817 158780938 -30498616 - L3 LINE CR1 -5 1572 1450 300 27 0 0 chr6 158781022 158781059 -30498495 + (TG)n Simple_repeat Simple_repeat 2 38 0 227 268 12 49 chr6 158781195 158781277 -30498277 - L2 LINE L2 -39 3233 3155 3544 115 38 47 chr6 158781860 158782461 -30497093 - L1MA4 LINE L1 0 6300 5705 248 237 0 17 chr6 158782935 158782994 -30496560 - L2 LINE L2 0 3313 3256 1161 151 0 0 chr6 158783335 158783514 -30496040 - AluSg/x SINE Alu 0 312 134 2270 86 13 3 chr6 158783514 158783816 -30495738 - AluY SINE Alu -6 305 1 2786 210 77 44 chr6 158784453 158784583 -30494971 - L1MD2 LINE L1 -192 6167 6043 2571 47 23 0 chr6 158784583 158784884 -30494670 - AluY SINE Alu -3 308 1 2786 210 77 44 chr6 158784884 158784983 -30494571 - L1MD2 LINE L1 -316 6043 5949 1664 87 62 4 chr6 158784983 158785224 -30494330 + AluSc SINE Alu 44 298 -11 2786 210 77 44 chr6 158785224 158785652 -30493902 - L1MD2 LINE L1 -410 5949 5478 2384 150 82 13 chr6 158785652 158786104 -30493450 - L1MB2 LINE L1 -2 6169 5687 2786 210 77 44 chr6 158786104 158786200 -30493354 - L1MD2 LINE L1 -881 5478 5387 * 6430 123 19 15 chr6 158786194 158787222 -30492332 - L1MA4A LINE L1 -5 6298 5266 1749 118 138 0 chr6 158787218 158787522 -30492032 + L1 LINE L1 3982 4327 -1819 * 1653 115 35 19 chr6 158787529 158787850 -30491704 - AluJb SINE Alu 0 373 49 3539 164 20 9 chr6 158787850 158788490 -30491064 + L1 LINE L1 4609 5255 -891 2283 223 29 9 chr6 158788484 158789031 -30490523 - L1MD2 LINE L1 -749 5397 4840 * 4025 231 193 35 chr6 158789028 158790126 -30489428 - L1MB2 LINE L1 -769 5377 4454 2210 111 0 7 chr6 158790126 158790432 -30489122 - AluSg SINE Alu -6 304 1 4025 231 193 35 chr6 158790432 158790661 -30488893 - L1MB2 LINE L1 -1692 4454 4263 2294 74 3 0 chr6 158790661 158790971 -30488583 - AluSp SINE Alu 0 311 1 4025 231 193 35 chr6 158790971 158791326 -30488228 - L1MB2 LINE L1 -1883 4263 3427 455 240 28 168 chr6 158791363 158791510 -30488044 + L2 LINE L2 2960 3126 -187 3691 173 42 35 chr6 158791510 158792233 -30487321 - L1MB8 LINE L1 -6 6172 5445 455 240 28 168 chr6 158792233 158792264 -30487290 + L2 LINE L2 3126 3160 -153 1456 189 13 35 chr6 158792264 158792581 -30486973 - AluJo SINE Alu -2 310 1 455 240 28 168 chr6 158792581 158792793 -30486761 + L2 LINE L2 3160 3296 -17 213 39 0 0 chr6 158792797 158792823 -30486731 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr6 158793251 158793273 -30486281 + AT_rich Low_complexity Low_complexity 1 22 0 960 148 31 0 chr6 158794828 158794990 -30484564 - L1MB2 LINE L1 -18 6153 5987 272 180 40 0 chr6 158795360 158795410 -30484144 - MIR SINE MIR 0 262 211 654 184 0 0 chr6 158795425 158795534 -30484020 - AluJo SINE Alu -24 288 180 289 176 0 0 chr6 158795537 158795588 -30483966 - AluJo SINE Alu -166 136 86 515 308 16 22 chr6 158795610 158795795 -30483759 - MIR SINE MIR -77 185 2 2528 61 3 3 chr6 158795947 158796258 -30483296 - AluY SINE Alu 0 311 1 288 311 11 0 chr6 158796313 158796403 -30483151 - MIR SINE MIR -123 139 49 21 0 0 0 chr6 158796614 158796635 -30482919 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 158796662 158796685 -30482869 + AT_rich Low_complexity Low_complexity 1 23 0 821 164 8 15 chr6 158796685 158796819 -30482735 - FLAM_C SINE Alu 0 133 1 1038 81 5 3 chr6 158797515 158797753 -30481801 + AluSg1 SINE Alu 2 299 0 1827 155 26 20 chr6 158797866 158798170 -30481384 + AluJb SINE Alu 7 312 0 2143 89 7 0 chr6 158798436 158798747 -30480807 - AluY SINE Alu 0 313 1 4310 100 4 0 chr6 158799297 158799849 -30479705 - MER41A LTR ERV1 0 554 1 24 67 0 0 chr6 158799885 158799930 -30479624 + AT_rich Low_complexity Low_complexity 1 45 0 251 270 180 0 chr6 158800251 158800351 -30479203 + MIR SINE MIR 47 164 -98 1573 77 5 0 chr6 158800351 158800546 -30479008 + AluSx SINE Alu 1 196 -116 573 45 0 0 chr6 158800548 158800614 -30478940 + AluSg/x SINE Alu 68 133 -177 1739 147 62 0 chr6 158800614 158800887 -30478667 + AluSg SINE Alu 1 290 -20 2311 87 0 10 chr6 158801204 158801502 -30478052 + AluSq SINE Alu 1 295 -18 1507 268 44 56 chr6 158801529 158802101 -30477453 - MLT1K LTR MaLR -3 585 21 603 247 40 7 chr6 158802300 158802450 -30477104 - MIR SINE MIR -2 260 106 252 270 117 54 chr6 158803715 158803826 -30475728 - L2 LINE L2 -1 3312 3195 297 350 38 22 chr6 158803856 158804039 -30475515 - L2 LINE L2 -201 3112 2927 436 294 76 25 chr6 158804686 158804924 -30474630 + L3 LINE CR1 1305 1554 -23 510 319 16 16 chr6 158805537 158805719 -30473835 - MIR3 SINE MIR -4 204 23 207 189 0 0 chr6 158806399 158806436 -30473118 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 2170 108 7 7 chr6 158807454 158807750 -30471804 - AluSq SINE Alu -17 296 1 306 0 0 0 chr6 158811176 158811210 -30468344 + (CA)n Simple_repeat Simple_repeat 2 35 0 2730 19 0 13 chr6 158815798 158816111 -30463443 + AluY SINE Alu 1 309 -2 1872 98 40 14 chr6 158816162 158816437 -30463117 + AluSx SINE Alu 13 294 -18 25 31 0 0 chr6 158816437 158816469 -30463085 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr6 158816493 158816523 -30463031 + AT_rich Low_complexity Low_complexity 1 30 0 355 309 98 74 chr6 158816549 158816886 -30462668 - L2 LINE L2 0 3272 2928 237 132 0 0 chr6 158817336 158817374 -30462180 + (CA)n Simple_repeat Simple_repeat 1 38 0 32 43 0 0 chr6 158817836 158817882 -30461672 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr6 158818296 158818321 -30461233 + AT_rich Low_complexity Low_complexity 1 25 0 1713 148 92 0 chr6 158818756 158819027 -30460527 + AluJb SINE Alu 1 296 -16 195 129 0 0 chr6 158819064 158819095 -30460459 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 2276 105 0 0 chr6 158820856 158821150 -30458404 + AluSx SINE Alu 1 294 -18 2347 106 0 0 chr6 158822461 158822764 -30456790 + AluSx SINE Alu 1 303 -9 1846 136 3 63 chr6 158823606 158823922 -30455632 + AluJb SINE Alu 3 299 -13 189 328 157 31 chr6 158825314 158825592 -30453962 + L2 LINE L2 1129 1436 -1878 193 316 18 0 chr6 158825654 158825711 -30453843 + L2 LINE L2 3014 3071 -201 233 314 16 65 chr6 158826051 158826175 -30453379 + L2 LINE L2 2399 2516 -798 550 266 120 10 chr6 158826478 158826670 -30452884 - MIR SINE MIR -1 261 49 1419 199 134 36 chr6 158826908 158827214 -30452340 - MSTD LTR MaLR -2 394 46 2070 131 0 0 chr6 158827214 158827520 -30452034 - AluSg SINE Alu 0 306 1 1419 199 134 36 chr6 158827520 158827569 -30451985 - MSTD LTR MaLR -350 46 3 373 298 11 0 chr6 158827667 158827761 -30451793 - L2 LINE L2 0 3272 3178 576 334 84 31 chr6 158828023 158828343 -30451211 + L3b LINE CR1 1227 1563 -20 22 56 0 0 chr6 158828837 158828873 -30450681 + AT_rich Low_complexity Low_complexity 1 36 0 3427 147 23 7 chr6 158829309 158829916 -30449638 + L1MB3 LINE L1 5564 6180 -3 403 95 0 0 chr6 158830298 158830361 -30449193 - Alu SINE Alu -2 308 246 821 76 0 8 chr6 158830501 158830620 -30448934 + (TA)n Simple_repeat Simple_repeat 2 119 0 989 142 58 0 chr6 158830622 158830777 -30448777 - AluJb SINE Alu -14 298 135 240 59 0 0 chr6 158830777 158830811 -30448743 + (TTTTA)n Simple_repeat Simple_repeat 3 36 0 2065 125 3 3 chr6 158830825 158831121 -30448433 - AluSq SINE Alu -17 296 1 205 291 0 0 chr6 158831325 158831380 -30448174 - L2 LINE L2 -214 3058 3004 1940 140 34 0 chr6 158832325 158832618 -30446936 + AluSx SINE Alu 1 303 -9 315 65 0 0 chr6 158832708 158832754 -30446800 - MADE1 DNA Mariner -34 46 1 981 191 64 10 chr6 158833811 158834015 -30445539 - MER58A DNA MER1_type 0 224 10 303 296 28 46 chr6 158834882 158834990 -30444564 - MIR SINE MIR -84 124 19 1800 123 40 22 chr6 158835256 158835533 -30444021 + AluSx SINE Alu 24 305 -7 351 306 164 33 chr6 158835542 158835872 -30443682 + L1M4 LINE L1 4027 4399 -1747 579 272 97 31 chr6 158836164 158836546 -30443008 - MLT1J LTR MaLR -102 409 3 21 57 0 0 chr6 158836903 158836938 -30442616 + AT_rich Low_complexity Low_complexity 1 35 0 2230 104 3 3 chr6 158838733 158839032 -30440522 - AluSg SINE Alu -11 299 1 468 0 0 0 chr6 158839284 158839336 -30440218 + (TTATA)n Simple_repeat Simple_repeat 4 55 0 753 203 0 0 chr6 158839714 158839847 -30439707 + FLAM_C SINE Alu 1 133 -10 601 184 9 9 chr6 158840388 158840502 -30439052 + FLAM_C SINE Alu 8 121 -22 21 0 0 0 chr6 158841472 158841493 -30438061 + AT_rich Low_complexity Low_complexity 1 21 0 804 100 0 0 chr6 158841527 158841637 -30437917 + AluSg/x SINE Alu 200 309 -3 402 21 0 0 chr6 158842390 158842437 -30437117 + (TG)n Simple_repeat Simple_repeat 2 48 0 1313 149 5 0 chr6 158842805 158843034 -30436520 + AluJb SINE Alu 84 313 0 300 291 81 0 chr6 158843158 158843244 -30436310 - L1ME4a LINE L1 -58 6063 5971 829 159 8 0 chr6 158843259 158843385 -30436169 + FLAM_A SINE Alu 1 127 -6 2725 76 3 6 chr6 158844024 158844380 -30435174 - THE1A LTR MaLR 0 355 1 11304 93 16 5 chr6 158844380 158845943 -30433611 - THE1A-int LTR MaLR 0 1580 1 2786 71 6 0 chr6 158845943 158846296 -30433258 - THE1A LTR MaLR 0 355 1 772 139 0 0 chr6 158847018 158847126 -30432428 + FLAM_C SINE Alu 4 111 -32 1030 243 5 0 chr6 158848650 158848864 -30430690 - MER58A DNA MER1_type -8 216 2 329 316 119 12 chr6 158849192 158849445 -30430109 - L2 LINE L2 -1063 2251 1972 495 257 173 5 chr6 158849852 158850058 -30429496 - L1ME LINE L1 -719 5434 5264 2339 66 3 16 chr6 158850058 158850361 -30429193 - AluY SINE Alu -12 299 1 495 257 173 5 chr6 158850361 158850550 -30429004 - L1ME LINE L1 -889 5264 4962 244 266 87 11 chr6 158850569 158850753 -30428801 - L1ME LINE L1 -2946 3183 2986 717 202 8 0 chr6 158850765 158850894 -30428660 - MER5B DNA MER1_type 0 178 49 296 285 81 27 chr6 158850901 158851161 -30428393 - L1ME LINE L1 -3433 2696 2423 26 0 0 0 chr6 158851187 158851213 -30428341 + AT_rich Low_complexity Low_complexity 1 26 0 227 196 71 0 chr6 158851393 158851449 -30428105 - L1ME LINE L1 -5738 381 322 335 335 47 42 chr6 158851540 158851755 -30427799 - L1ME LINE L1 -5896 223 8 1910 240 41 32 chr6 158851857 158852391 -30427163 - MLT1H1 LTR MaLR 0 555 17 1782 129 21 35 chr6 158853009 158853318 -30426236 + AluJb SINE Alu 1 305 0 36 82 0 0 chr6 158853700 158853785 -30425769 + AT_rich Low_complexity Low_complexity 1 85 0 2060 146 0 0 chr6 158853896 158854183 -30425371 + AluSx SINE Alu 1 287 -25 180 0 0 0 chr6 158854194 158854214 -30425340 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1925 172 0 0 chr6 158854520 158854823 -30424731 + AluJo SINE Alu 5 307 -5 317 300 100 39 chr6 158855049 158855179 -30424375 + MIR SINE MIR 27 164 -98 288 341 0 12 chr6 158855393 158855478 -30424076 - L2 LINE L2 -6 3307 3224 305 47 23 0 chr6 158855753 158855796 -30423758 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 30078 84 7 8 chr6 158855796 158859637 -30419917 - L1PA7 LINE L1 0 6154 2320 2406 88 0 0 chr6 158859637 158859945 -30419609 - AluY SINE Alu -3 308 1 30078 84 7 8 chr6 158859945 158861391 -30418163 - L1PA7 LINE L1 -3834 2320 874 1722 146 29 58 chr6 158861741 158862049 -30417505 + AluJo SINE Alu 1 299 -13 295 361 0 35 chr6 158862469 158862529 -30417025 + MIR3 SINE MIR 20 81 -127 3030 109 58 22 chr6 158862529 158862650 -30416904 - MER75 DNA T2_type 0 514 399 1874 168 3 3 chr6 158862650 158862953 -30416601 + AluJo SINE Alu 1 303 -9 3030 109 58 22 chr6 158862953 158863327 -30416227 - MER75 DNA T2_type -115 399 1 295 361 0 35 chr6 158863327 158863410 -30416144 + MIR3 SINE MIR 81 158 -50 484 245 68 89 chr6 158863412 158863928 -30415626 - MLT1G1 LTR MaLR -2 593 46 576 181 107 40 chr6 158863956 158864133 -30415421 + MER63 DNA MER1_type 56 244 -817 501 268 49 40 chr6 158864299 158864498 -30415056 - MIR SINE MIR -41 221 16 2446 76 0 7 chr6 158864582 158864885 -30414669 + AluSg SINE Alu 1 301 -9 304 214 68 86 chr6 158865469 158865586 -30413968 - L1ME4a LINE L1 -19 6102 5988 1898 155 0 17 chr6 158866066 158866357 -30413197 + AluJo SINE Alu 11 296 -16 272 127 0 0 chr6 158866591 158866646 -30412908 + L1MB3 LINE L1 6128 6182 -1 1249 201 63 33 chr6 158867451 158867512 -30412042 - MER2 DNA MER2_type 0 344 286 2185 136 3 0 chr6 158867512 158867813 -30411741 - AluSx SINE Alu -10 302 1 1249 201 63 33 chr6 158867813 158868085 -30411469 - MER2 DNA MER2_type -58 286 1 249 57 0 0 chr6 158868740 158868775 -30410779 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 796 154 0 0 chr6 158868777 158868894 -30410660 - FLAM_C SINE Alu -15 118 2 224 233 14 0 chr6 158869079 158869152 -30410402 + (TA)n Simple_repeat Simple_repeat 1 74 0 1868 161 3 0 chr6 158869214 158869505 -30410049 + AluSx SINE Alu 1 292 -20 413 269 73 20 chr6 158869537 158869782 -30409772 - L1ME4a LINE L1 -303 5818 5561 376 297 90 45 chr6 158869904 158869978 -30409576 - L1ME4a LINE L1 -748 5398 5329 1547 163 4 8 chr6 158869978 158870230 -30409324 + AluJo SINE Alu 46 296 -16 376 297 90 45 chr6 158870230 158870445 -30409109 - L1ME4a LINE L1 -817 5329 5096 248 277 30 0 chr6 158870617 158870718 -30408836 - L1ME4a LINE L1 -1301 4845 4742 277 234 32 11 chr6 158871618 158871712 -30407842 + L1MC4a LINE L1 6074 6169 -1639 2530 56 3 0 chr6 158872722 158873026 -30406528 + AluY SINE Alu 1 305 -6 2579 112 11 66 chr6 158873224 158873458 -30406096 - Tigger2a DNA MER2_type -2278 430 232 1713 144 59 7 chr6 158873458 158873729 -30405825 + AluSg SINE Alu 1 285 -25 2579 112 11 66 chr6 158873729 158873949 -30405605 - Tigger2a DNA MER2_type -2476 232 1 2581 49 0 0 chr6 158873980 158874286 -30405268 - AluY SINE Alu -5 306 1 523 149 11 0 chr6 158874705 158874799 -30404755 + FRAM SINE Alu 52 146 -30 207 0 0 0 chr6 158874803 158874826 -30404728 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2294 112 3 0 chr6 158874995 158875298 -30404256 + AluSx SINE Alu 1 304 -8 27 0 0 0 chr6 158875312 158875339 -30404215 + AT_rich Low_complexity Low_complexity 1 27 0 1945 131 0 0 chr6 158876168 158876442 -30403112 + AluSx SINE Alu 1 274 -38 3243 126 57 0 chr6 158877003 158877512 -30402042 + L1MA5 LINE L1 5760 6297 -3 31 44 0 0 chr6 158877512 158877557 -30401997 + AT_rich Low_complexity Low_complexity 1 45 0 592 260 31 26 chr6 158877711 158877903 -30401651 + MIR SINE MIR 70 262 0 2219 121 89 9 chr6 158877908 158878255 -30401299 - THE1C LTR MaLR 0 375 1 402 281 68 60 chr6 158878531 158878766 -30400788 - L2 LINE L2 0 3313 3077 1696 218 25 45 chr6 158878769 158879214 -30400340 - MLT2B2 LTR ERVL 0 515 80 2365 143 104 0 chr6 158879214 158879600 -30399954 - MSTB LTR MaLR 0 426 1 5298 171 43 3 chr6 158879600 158880496 -30399058 - MSTB-int LTR MaLR 0 1651 720 1627 177 14 4 chr6 158881096 158881373 -30398181 + AluJo SINE Alu 1 280 -32 726 202 8 8 chr6 158881587 158881711 -30397843 - FLAM_A SINE Alu -9 124 1 809 163 0 22 chr6 158881767 158881902 -30397652 + FLAM_C SINE Alu 1 132 -1 230 299 63 58 chr6 158882130 158882304 -30397250 - L2 LINE L2 -225 3047 2873 248 364 95 20 chr6 158882376 158882629 -30396925 - L2 LINE L2 -799 2515 2244 22 0 0 0 chr6 158884727 158884749 -30394805 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr6 158885030 158885058 -30394496 + AT_rich Low_complexity Low_complexity 1 28 0 461 17 17 0 chr6 158886540 158886598 -30392956 + (TA)n Simple_repeat Simple_repeat 2 60 0 2082 107 0 24 chr6 158887245 158887573 -30391981 + AluSx SINE Alu 1 321 0 553 274 36 47 chr6 158888099 158888314 -30391240 - MER20B DNA MER1_type -4 215 1 198 0 0 0 chr6 158888573 158888595 -30390959 + (T)n Simple_repeat Simple_repeat 1 22 0 26 50 0 0 chr6 158891018 158891058 -30388496 + AT_rich Low_complexity Low_complexity 1 40 0 959 147 0 0 chr6 158891058 158891201 -30388353 + FLAM_C SINE Alu 1 143 0 1909 135 3 47 chr6 158891717 158892035 -30387519 - AluJo SINE Alu -4 308 5 1771 144 61 0 chr6 158892149 158892426 -30387128 + AluSx SINE Alu 1 294 -18 26 0 0 0 chr6 158892973 158892999 -30386555 + AT_rich Low_complexity Low_complexity 1 26 0 1730 181 7 3 chr6 158893356 158893649 -30385905 + AluJo SINE Alu 6 299 -13 813 179 0 36 chr6 158893785 158893925 -30385629 - AluJo SINE Alu -176 136 2 831 275 67 114 chr6 158894038 158894751 -30384803 - L2 LINE L2 -447 2867 2188 506 285 7 26 chr6 158895181 158895332 -30384222 - MIR SINE MIR -1 261 114 1846 174 32 40 chr6 158895422 158895825 -30383729 + LTR37A LTR ERV1 1 400 -26 261 200 0 0 chr6 158895830 158895880 -30383674 + MIR SINE MIR 173 222 -40 231 277 62 77 chr6 158895897 158896027 -30383527 - L2 LINE L2 -47 3225 3098 2439 76 0 3 chr6 158896340 158896644 -30382910 - AluY SINE Alu -8 303 1 780 184 16 0 chr6 158896704 158896829 -30382725 + FLAM_A SINE Alu 1 127 -6 413 159 0 0 chr6 158896922 158896985 -30382569 - FLAM SINE Alu -12 131 69 2014 157 0 0 chr6 158897100 158897399 -30382155 + AluSx SINE Alu 1 299 -13 196 250 21 0 chr6 158897805 158897853 -30381701 + MIR SINE MIR 206 254 -8 502 316 72 10 chr6 158897891 158898100 -30381454 + MIR SINE MIR 1 222 -40 2510 147 47 87 chr6 158898329 158898845 -30380709 + LTR42 LTR ERVL 1 495 0 2059 141 0 3 chr6 158899095 158899393 -30380161 - AluSx SINE Alu -15 297 1 466 312 42 23 chr6 158899528 158899743 -30379811 + MIR SINE MIR 3 221 -41 1741 167 24 3 chr6 158899781 158900069 -30379485 + AluJb SINE Alu 1 294 -18 352 311 22 0 chr6 158900101 158900191 -30379363 + MIR SINE MIR 8 99 -163 2119 131 35 26 chr6 158900192 158900574 -30378980 - THE1B LTR MaLR -1 363 1 2234 123 92 2 chr6 158900621 158901198 -30378356 - MER72 LTR ERV1 -58 664 2 328 284 10 0 chr6 158901199 158901301 -30378253 + MIR SINE MIR 116 218 -44 231 229 96 24 chr6 158901300 158901383 -30378171 - L2 LINE L2 0 3313 3225 * 2309 94 0 0 chr6 158901547 158901835 -30377719 - AluSq SINE Alu -25 288 1 487 257 0 0 chr6 158903600 158903701 -30375853 + L2 LINE L2 3208 3308 -5 865 172 0 15 chr6 158904054 158904188 -30375366 - FLAM_C SINE Alu 0 133 2 1596 162 0 15 chr6 158904790 158905062 -30374492 - AluJb SINE Alu -44 268 1 2224 75 4 0 chr6 158906740 158907045 -30372509 - AluSp SINE Alu 0 306 1 394 122 110 12 chr6 158907678 158907760 -30371794 + L1MB7 LINE L1 6095 6184 0 1426 206 111 19 chr6 158909044 158909423 -30370131 - MLT1C LTR MaLR 0 467 54 276 291 89 70 chr6 158910209 158910480 -30369074 - L2 LINE L2 -78 3194 2919 278 200 36 0 chr6 158910652 158910707 -30368847 - MER66B LTR ERV1 -142 344 288 7572 97 15 11 chr6 158910961 158916456 -30363098 - L1PA7 LINE L1 0 7592 1148 275 291 23 35 chr6 158916892 158916978 -30362576 - MIR3 SINE MIR -9 199 115 313 278 21 89 chr6 158917819 158918010 -30361544 + L2 LINE L2 3136 3313 0 208 139 0 0 chr6 158918168 158918204 -30361350 + (T)n Simple_repeat Simple_repeat 1 36 0 395 236 35 113 chr6 158918690 158918919 -30360635 + L2 LINE L2 3103 3313 0 1545 209 35 11 chr6 158919208 158919495 -30360059 + AluJo SINE Alu 3 296 -6 208 283 33 0 chr6 158920059 158920119 -30359435 + GA-rich Low_complexity Low_complexity 4 65 0 2247 111 0 3 chr6 158920283 158920581 -30358973 - AluSx SINE Alu -15 297 1 27 29 0 0 chr6 158920581 158920615 -30358939 + AT_rich Low_complexity Low_complexity 1 34 0 1106 135 25 0 chr6 158920676 158920839 -30358715 + AluSg/x SINE Alu 137 303 -9 2232 92 0 14 chr6 158921684 158921979 -30357575 + AluSq SINE Alu 1 291 -22 21 57 0 0 chr6 158923081 158923116 -30356438 + AT_rich Low_complexity Low_complexity 1 35 0 407 312 188 18 chr6 158924742 158925072 -30354482 + L2 LINE L2 2928 3313 0 2094 102 3 17 chr6 158925205 158925500 -30354054 - AluSg SINE Alu -19 291 1 1770 160 32 22 chr6 158925562 158925925 -30353629 - MER47B DNA MER2_type 0 418 1 1201 107 177 5 chr6 158926347 158926610 -30352944 + Tigger4(Zombi) DNA MER2_type 44 2731 0 1234 241 174 0 chr6 158927179 158927581 -30351973 - HAL1 LINE L1 -631 1876 1405 3324 83 16 18 chr6 158927610 158928055 -30351499 - MLT2A1 LTR ERVL 0 444 1 5145 53 2 0 chr6 158928055 158928673 -30350881 - HERVL-A1 LTR ERVL 0 5654 5036 * 36844 70 10 15 chr6 158928670 158931938 -30347616 - HERVL-A1 LTR ERVL -964 4690 1407 2752 103 11 0 chr6 158931938 158932289 -30347265 - THE1A LTR MaLR 0 355 1 12089 97 17 1 chr6 158932289 158933844 -30345710 - THE1A-int LTR MaLR 0 1580 1 2866 88 3 0 chr6 158933844 158934198 -30345356 - THE1A LTR MaLR 0 355 1 1789 167 0 11 chr6 158934198 158934520 -30345034 - AluSx SINE Alu 0 319 1 36844 70 10 15 chr6 158934520 158935956 -30343598 - HERVL-A1 LTR ERVL -4243 1411 5 3592 74 0 35 chr6 158935960 158936420 -30343134 - MLT2A1 LTR ERVL 0 444 1 870 267 280 8 chr6 158936420 158936654 -30342900 - HAL1 LINE L1 -1176 1331 1162 2458 93 0 0 chr6 158936654 158936966 -30342588 - AluSp SINE Alu 0 313 2 870 267 280 8 chr6 158936966 158937337 -30342217 - HAL1 LINE L1 -1345 1162 560 224 260 0 0 chr6 158937364 158937414 -30342140 + (TA)n Simple_repeat Simple_repeat 1 50 0 1484 233 14 3 chr6 158937418 158937710 -30341844 - MER82 DNA MER2_type -6 647 353 1032 151 0 0 chr6 158937713 158937865 -30341689 + AluSg/x SINE Alu 132 283 -27 1988 170 41 0 chr6 158937888 158938229 -30341325 - MER82 DNA MER2_type -298 355 1 692 256 72 105 chr6 158938274 158938771 -30340783 - HAL1 LINE L1 -1992 515 35 1765 162 23 10 chr6 158939209 158939512 -30340042 - AluJo SINE Alu -5 307 1 1075 229 14 0 chr6 158939969 158940183 -30339371 - MER58A DNA MER1_type -6 218 2 693 213 27 0 chr6 158940194 158940344 -30339210 - L1MD2 LINE L1 -10 6349 6196 1317 226 61 48 chr6 158940346 158940653 -30338901 - L1MD2 LINE L1 -219 6140 5825 2042 170 0 0 chr6 158940653 158940965 -30338589 + AluJb SINE Alu 1 312 0 1317 226 61 48 chr6 158940965 158941050 -30338504 - L1MD2 LINE L1 -534 5825 5743 523 309 73 0 chr6 158941409 158941574 -30337980 + MIR SINE MIR 34 210 -52 319 83 33 0 chr6 158941694 158941754 -30337800 + (TA)n Simple_repeat Simple_repeat 2 63 0 1851 157 4 0 chr6 158942442 158942723 -30336831 - AluJo SINE Alu -30 282 1 356 224 206 9 chr6 158943214 158943321 -30336233 - L2 LINE L2 -3 3310 3183 24 32 0 0 chr6 158943418 158943449 -30336105 + AT_rich Low_complexity Low_complexity 1 31 0 225 330 134 31 chr6 158944087 158944184 -30335370 + MIR3 SINE MIR 10 116 -92 22 0 0 0 chr6 158946309 158946331 -30333223 + AT_rich Low_complexity Low_complexity 1 22 0 292 211 0 0 chr6 158946539 158946610 -30332944 - L1MB4 LINE L1 0 6180 6110 437 262 170 31 chr6 158946636 158946865 -30332689 - L1MC4 LINE L1 -1 8041 7781 4662 213 40 18 chr6 158947161 158948351 -30331203 - L1MD2 LINE L1 -853 5293 4078 3458 221 89 12 chr6 158948392 158949676 -30329878 + L1ME2 LINE L1 1863 3200 -3015 * 4465 190 72 78 chr6 158949674 158950232 -30329322 + L1ME2 LINE L1 3920 4480 -1923 2247 106 0 10 chr6 158950232 158950534 -30329020 + AluSg SINE Alu 1 299 -11 4465 190 72 78 chr6 158950534 158950803 -30328751 + L1ME2 LINE L1 4480 4749 -1654 2149 121 30 3 chr6 158950803 158951108 -30328446 + AluSq SINE Alu 1 313 0 4465 190 72 78 chr6 158951108 158951440 -30328114 + L1ME2 LINE L1 4749 5082 -1321 2265 176 36 50 chr6 158951440 158951682 -30327872 - MSTB1 LTR MaLR 0 432 197 1983 150 0 7 chr6 158951682 158951982 -30327572 - AluSx SINE Alu -14 298 1 2265 176 36 50 chr6 158951982 158952177 -30327377 - MSTB1 LTR MaLR -235 197 1 4465 190 72 78 chr6 158952177 158952685 -30326869 + L1ME2 LINE L1 5082 5592 -811 1883 134 11 11 chr6 158952685 158952968 -30326586 + AluSx SINE Alu 19 301 -11 4465 190 72 78 chr6 158952968 158953065 -30326489 + L1ME2 LINE L1 5592 5688 -715 2471 85 0 0 chr6 158953065 158953370 -30326184 - AluY SINE Alu -6 305 1 4465 190 72 78 chr6 158953370 158953884 -30325670 + L1ME2 LINE L1 5688 6402 -1 2285 119 0 0 chr6 158954536 158954847 -30324707 - AluSq SINE Alu -2 311 1 528 276 79 59 chr6 158955972 158956226 -30323328 - MIR SINE MIR -3 259 1 325 245 284 0 chr6 158956226 158956381 -30323173 + L2 LINE L2 3113 3311 -2 1545 167 78 0 chr6 158957565 158957835 -30321719 - AluJb SINE Alu -11 301 11 1800 180 3 3 chr6 158958765 158959060 -30320494 - AluJb SINE Alu -17 295 1 224 273 0 0 chr6 158959182 158959226 -30320328 - L2 LINE L2 -21 3292 3249 2385 99 3 3 chr6 158959493 158959805 -30319749 + AluSp SINE Alu 2 313 0 2180 121 0 0 chr6 158960225 158960523 -30319031 - AluSx SINE Alu -14 298 1 198 0 0 0 chr6 158960611 158960633 -30318921 + (TTTC)n Simple_repeat Simple_repeat 3 24 0 2420 91 0 0 chr6 158960635 158960944 -30318610 - AluSx SINE Alu -3 309 1 373 276 135 6 chr6 158960945 158961108 -30318446 + MIR SINE MIR 50 233 -29 521 182 10 30 chr6 158962887 158962986 -30316568 - Tigger5 DNA MER2_type 0 2323 2227 1357 142 10 0 chr6 158963038 158963242 -30316312 + MER2 DNA MER2_type 1 206 -139 186 43 0 0 chr6 158963282 158963305 -30316249 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 294 258 30 0 chr6 158963306 158963372 -30316182 + MER2 DNA MER2_type 278 345 0 1019 149 9 78 chr6 158963409 158963738 -30315816 - L1M3 LINE L1 -711 5705 5420 1192 187 19 0 chr6 158963738 158963952 -30315602 - AluJo SINE Alu 0 312 95 7495 210 52 17 chr6 158963972 158965813 -30313741 - L1M3 LINE L1 -985 5397 3493 1883 179 0 0 chr6 158965827 158966128 -30313426 - AluSx SINE Alu -11 301 1 10640 154 9 2 chr6 158966167 158968647 -30310907 - L1PA11 LINE L1 -8 7604 5098 1069 123 0 0 chr6 158968647 158968797 -30310757 + AluSg/x SINE Alu 147 296 -14 13003 204 36 39 chr6 158968797 158970127 -30309427 - L1PA11 LINE L1 -2513 5071 3737 2105 139 3 0 chr6 158970127 158970437 -30309117 - AluSx SINE Alu -1 311 1 13003 204 36 39 chr6 158970437 158973379 -30306175 - L1PA11 LINE L1 -3847 3737 2 11463 161 76 29 chr6 158973386 158974468 -30305086 - L1M3 LINE L1 -2910 3472 2442 2314 134 73 12 chr6 158974468 158974811 -30304743 + THE1B LTR MaLR 1 364 0 12852 84 3 2 chr6 158974811 158976390 -30303164 + THE1B-int LTR MaLR 1 1580 0 2310 130 72 20 chr6 158976390 158976735 -30302819 + THE1B LTR MaLR 1 363 -1 11463 161 76 29 chr6 158976735 158976978 -30302576 - L1M3 LINE L1 -3940 2442 2212 1127 145 180 0 chr6 158976978 158977178 -30302376 + MER46A DNA MER2_type 1 236 0 11463 161 76 29 chr6 158977178 158977557 -30301997 - L1M3 LINE L1 -4170 2212 1852 733 203 8 0 chr6 158977557 158977680 -30301874 - FLAM_A SINE Alu -6 127 4 11463 161 76 29 chr6 158977680 158978602 -30300952 - L1M3 LINE L1 -4530 1852 975 465 19 0 0 chr6 158978602 158978656 -30300898 + (TG)n Simple_repeat Simple_repeat 1 54 0 11463 161 76 29 chr6 158978656 158979336 -30300218 - L1M3 LINE L1 -5407 975 4 214 306 82 10 chr6 158979971 158980013 -30299541 + L2 LINE L2 2757 2795 -519 2326 74 10 7 chr6 158980013 158980309 -30299245 + AluSc SINE Alu 1 297 -12 214 306 82 10 chr6 158980309 158980364 -30299190 + L2 LINE L2 2795 2861 -453 939 279 65 63 chr6 158980409 158980854 -30298700 + L2 LINE L2 2863 3308 -5 1615 197 0 29 chr6 158981032 158981341 -30298213 + AluJo SINE Alu 1 300 -12 13783 160 20 60 chr6 158981568 158984550 -30295004 - L1MA4A LINE L1 -4 7001 3900 2509 68 0 3 chr6 158984550 158984860 -30294694 - AluY SINE Alu -2 309 1 13783 160 20 60 chr6 158984860 158984908 -30294646 - L1MA4A LINE L1 -3105 3900 3852 2346 90 13 6 chr6 158984908 158985219 -30294335 - AluSp SINE Alu 0 313 1 13783 160 20 60 chr6 158985219 158986210 -30293344 - L1MA4A LINE L1 -3153 3852 3145 2211 22 140 0 chr6 158986210 158986482 -30293072 - AluY SINE Alu -1 310 1 13783 160 20 60 chr6 158986482 158986549 -30293005 - L1MA4A LINE L1 -3860 3145 3077 * 17042 168 49 8 chr6 158986535 158989090 -30290464 - L1PB4 LINE L1 0 6872 4425 186 43 0 0 chr6 158989090 158989113 -30290441 + (TTG)n Simple_repeat Simple_repeat 2 24 0 17042 168 49 8 chr6 158989113 158989762 -30289792 - L1PB4 LINE L1 -2447 4425 3804 2371 53 40 10 chr6 158989762 158990061 -30289493 - AluY SINE Alu -3 308 1 17042 168 49 8 chr6 158990061 158991237 -30288317 - L1PB4 LINE L1 -3068 3804 2678 2190 112 6 34 chr6 158991237 158991559 -30287995 - AluSq SINE Alu 0 313 1 17042 168 49 8 chr6 158991559 158993774 -30285780 - L1PB4 LINE L1 -4194 2678 1 3725 235 40 59 chr6 158993775 158994886 -30284668 - L1MA4A LINE L1 -5034 1815 727 1727 170 27 3 chr6 158995031 158995331 -30284223 - AluJo SINE Alu -2 310 4 541 191 53 15 chr6 158995651 158995782 -30283772 - MIR SINE MIR -63 199 64 1548 136 114 4 chr6 158998202 158998474 -30281080 - AluJb SINE Alu -10 302 1 446 244 49 56 chr6 158999494 158999721 -30279833 + L1ME3 LINE L1 5932 6148 -14 24 0 0 0 chr6 158999979 159000003 -30279551 + AT_rich Low_complexity Low_complexity 1 24 0 1808 154 14 7 chr6 159002262 159002548 -30277006 - AluJb SINE Alu -24 288 1 2057 100 0 4 chr6 159004872 159005141 -30274413 - AluSc SINE Alu -23 286 19 1291 235 17 0 chr6 159005410 159005644 -30273910 + MER8 DNA MER2_type 2 239 0 287 305 8 25 chr6 159007063 159007181 -30272373 + L2 LINE L2 3197 3312 -1 261 0 0 0 chr6 159008149 159008178 -30271376 + (CAA)n Simple_repeat Simple_repeat 2 30 0 485 159 117 2 chr6 159010172 159010327 -30269227 + MER3 DNA MER1_type 7 209 0 195 42 0 0 chr6 159011490 159011514 -30268040 + (CAA)n Simple_repeat Simple_repeat 2 25 0 969 309 92 8 chr6 159012954 159013356 -30266198 + HAL1 LINE L1 5 440 -2067 911 211 148 36 chr6 159013417 159013801 -30265753 + HAL1 LINE L1 632 1058 -1449 431 270 121 28 chr6 159014052 159014300 -30265254 + L1M4 LINE L1 4082 4352 -1794 215 250 0 19 chr6 159015358 159015410 -30264144 - L2 LINE L2 -950 2364 2314 186 43 0 0 chr6 159015919 159015942 -30263612 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 381 202 0 56 chr6 159019020 159019109 -30260445 - MIR SINE MIR -87 175 92 314 242 73 79 chr6 159020426 159020604 -30258950 + MER5B DNA MER1_type 2 178 0 338 352 37 26 chr6 159022547 159022820 -30256734 + L2 LINE L2 2150 2425 -889 420 302 116 6 chr6 159022846 159023018 -30256536 - MIR SINE MIR -25 237 47 301 333 20 0 chr6 159025467 159025569 -30253985 + L2 LINE L2 2655 2758 -556 198 328 0 0 chr6 159025610 159025668 -30253886 - L2 LINE L2 -562 2752 2695 630 272 56 10 chr6 159026442 159026637 -30252917 + MIR SINE MIR 1 204 -58 189 0 0 0 chr6 159027382 159027403 -30252151 + (A)n Simple_repeat Simple_repeat 1 21 0 591 323 45 14 chr6 159028593 159028816 -30250738 + MIR SINE MIR 14 243 -19 849 165 0 0 chr6 159028887 159029020 -30250534 + FLAM_C SINE Alu 1 133 -10 183 291 148 76 chr6 159031564 159031774 -30247780 - L2 LINE L2 -3 3269 3045 32 26 0 0 chr6 159031959 159031998 -30247556 + AT_rich Low_complexity Low_complexity 1 39 0 360 327 39 43 chr6 159034308 159034562 -30244992 - MIR SINE MIR -3 259 7 632 270 96 22 chr6 159034680 159034910 -30244644 + MIR SINE MIR 15 261 -1 195 265 133 24 chr6 159035514 159035597 -30243957 - L2 LINE L2 -159 3113 3022 192 77 0 0 chr6 159035661 159035687 -30243867 + (T)n Simple_repeat Simple_repeat 1 26 0 442 264 19 7 chr6 159036234 159036389 -30243165 - L1M4 LINE L1 -3090 3056 2900 * 1458 143 45 14 chr6 159036386 159036672 -30242882 - L1MC1 LINE L1 0 6333 6039 920 110 26 7 chr6 159036674 159036829 -30242725 - L1MC1 LINE L1 -373 5971 5814 1993 124 3 80 chr6 159036846 159037184 -30242370 - AluSx SINE Alu 0 312 1 4394 218 77 106 chr6 159037283 159038622 -30240932 - L1MEc LINE L1 -2716 3499 2124 351 104 0 0 chr6 159038622 159038670 -30240884 - HY1 scRNA scRNA -64 48 1 4394 218 77 106 chr6 159038670 159040262 -30239292 - L1MEc LINE L1 -4091 2124 682 977 206 9 44 chr6 159040262 159040490 -30239064 + MER58A DNA MER1_type 1 220 -4 4394 218 77 106 chr6 159040490 159041124 -30238430 - L1MEc LINE L1 -5533 682 32 2691 264 182 45 chr6 159041339 159041477 -30238077 - L2 LINE L2 -5 3308 3190 254 136 23 0 chr6 159041477 159041521 -30238033 + L1MEc LINE L1 696 740 -5656 2691 264 182 45 chr6 159041521 159042915 -30236639 - L2 LINE L2 -123 3190 1522 1236 274 169 6 chr6 159042916 159043426 -30236128 - L2 LINE L2 -2120 1194 602 893 245 159 3 chr6 159044622 159044936 -30234618 - L1MD2 LINE L1 -21 6338 5976 180 0 0 0 chr6 159045009 159045029 -30234525 + (CTA)n Simple_repeat Simple_repeat 2 21 0 189 0 0 0 chr6 159045282 159045303 -30234251 + (TG)n Simple_repeat Simple_repeat 2 22 0 249 154 26 13 chr6 159045303 159045381 -30234173 + (TA)n Simple_repeat Simple_repeat 2 80 0 501 272 40 23 chr6 159045381 159045554 -30234000 - MIR SINE MIR -58 204 29 603 186 39 0 chr6 159046587 159046713 -30232841 - AluJb SINE Alu 0 306 177 706 139 0 0 chr6 159046822 159046930 -30232624 - FLAM_C SINE Alu 0 143 36 1281 207 60 23 chr6 159047989 159048341 -30231213 - MLT1A1 LTR MaLR 0 365 1 1517 231 119 25 chr6 159048659 159049096 -30230458 + MLT2B1 LTR ERVL 1 478 -42 287 288 233 53 chr6 159049139 159049504 -30230050 + L2 LINE L2 1233 1531 -1783 2318 100 0 0 chr6 159049504 159049803 -30229751 - AluSc SINE Alu -10 299 1 287 288 233 53 chr6 159049803 159050003 -30229551 + L2 LINE L2 1531 1900 -1414 255 189 0 19 chr6 159050007 159050060 -30229494 - MIR SINE MIR -106 156 105 185 292 56 14 chr6 159050357 159050429 -30229125 - MIR SINE MIR -60 148 74 286 195 98 86 chr6 159050618 159050792 -30228762 - MER115 DNA AcHobo -57 636 461 1066 287 48 12 chr6 159050940 159051271 -30228283 + MER115 DNA AcHobo 1 343 -350 433 239 51 72 chr6 159051299 159051575 -30227979 + MER115 DNA AcHobo 424 693 0 414 289 0 16 chr6 159051725 159051853 -30227701 + MLT1I LTR MaLR 278 403 -6 2099 102 41 14 chr6 159052092 159052385 -30227169 + AluSx SINE Alu 1 301 -11 2246 102 10 0 chr6 159052411 159052716 -30226838 + AluSg SINE Alu 1 308 -2 351 0 0 0 chr6 159052716 159052755 -30226799 + (CA)n Simple_repeat Simple_repeat 2 40 0 538 193 89 7 chr6 159054076 159054211 -30225343 + MLT1B LTR MaLR 1 146 -244 398 315 56 41 chr6 159054391 159054588 -30224966 + MIR SINE MIR 20 219 -43 1039 265 56 20 chr6 159055775 159056077 -30223477 + MLT1J LTR MaLR 1 313 -198 543 255 142 43 chr6 159056082 159056407 -30223147 + L1ME3 LINE L1 4797 5153 -993 1194 226 119 42 chr6 159056450 159056954 -30222600 + L1ME3 LINE L1 5406 5948 -216 513 175 0 70 chr6 159056955 159057069 -30222485 + AluJb SINE Alu 176 281 -31 443 220 42 78 chr6 159057095 159057286 -30222268 + L1ME3 LINE L1 5936 6119 -43 441 277 129 7 chr6 159057742 159057897 -30221657 + MIR SINE MIR 2 175 -87 23 0 0 0 chr6 159058582 159058605 -30220949 + AT_rich Low_complexity Low_complexity 1 23 0 277 180 0 0 chr6 159058715 159058765 -30220789 + L2 LINE L2 3217 3266 -6 25 51 0 0 chr6 159059169 159059208 -30220346 + AT_rich Low_complexity Low_complexity 1 39 0 787 240 53 24 chr6 159059236 159059444 -30220110 - MIR SINE MIR -20 242 29 339 286 195 18 chr6 159059444 159060098 -30219456 + L1 LINE L1 3902 4707 -1439 340 127 114 0 chr6 159060255 159060334 -30219220 + L1ME3 LINE L1 3852 3939 -2207 4509 174 116 54 chr6 159060338 159060947 -30218607 + L1MD3 LINE L1 6654 7224 -771 299 122 0 0 chr6 159060947 159060996 -30218558 + MLT1F1 LTR MaLR 1 49 -518 4509 174 116 54 chr6 159060996 159061589 -30217965 + L1MD3 LINE L1 7224 7981 -14 2728 238 57 35 chr6 159061585 159062723 -30216831 + L1ME3 LINE L1 3914 5076 -1070 * 2451 88 0 0 chr6 159062727 159063033 -30216521 + AluY SINE Alu 1 306 -5 372 248 65 18 chr6 159063034 159063248 -30216306 + L1ME3 LINE L1 5200 5424 -740 487 250 58 32 chr6 159063252 159063440 -30216114 + L1ME3 LINE L1 5610 5802 -360 531 168 0 11 chr6 159063448 159063543 -30216011 - MER58A DNA MER1_type -1 223 130 884 187 0 7 chr6 159063569 159063719 -30215835 - FRAM SINE Alu -16 160 12 407 206 0 0 chr6 159063730 159063803 -30215751 - MER58A DNA MER1_type -34 73 1 671 199 192 39 chr6 159063804 159064116 -30215438 + L1ME3 LINE L1 5803 6162 0 354 308 70 7 chr6 159064169 159064312 -30215242 + L1MEd LINE L1 1081 1232 -4887 204 159 37 19 chr6 159064322 159064429 -30215125 + (TA)n Simple_repeat Simple_repeat 1 109 0 366 265 97 31 chr6 159064502 159064698 -30214856 + L1MEd LINE L1 2719 2927 -3202 238 196 7 189 chr6 159065100 159065248 -30214306 + MER3 DNA MER1_type 9 129 -80 306 312 116 4 chr6 159065718 159065854 -30213700 - L1ME3 LINE L1 -55 6115 5963 259 245 86 73 chr6 159066061 159066171 -30213383 - L1ME3 LINE L1 -393 5771 5657 410 241 127 46 chr6 159066171 159066408 -30213146 + MER112 DNA MER1_type 1 256 0 259 245 86 73 chr6 159066408 159066448 -30213106 - L1ME3 LINE L1 -507 5657 5619 376 264 194 71 chr6 159067223 159067605 -30211949 + L1M2 LINE L1 572 1000 -5849 327 260 96 123 chr6 159067683 159068049 -30211505 - L1M2 LINE L1 -5734 1115 760 430 242 121 0 chr6 159068158 159068282 -30211272 - MIR SINE MIR -19 243 105 617 276 187 26 chr6 159068282 159068869 -30210685 - HAL1b LINE L1 -186 1162 481 5821 50 0 4 chr6 159068902 159069621 -30209933 - L1PA7 LINE L1 -2 6152 5437 7546 74 10 3 chr6 159069621 159070765 -30208789 + L1P LINE L1 4275 5422 -732 399 256 39 64 chr6 159070773 159070976 -30208578 - HAL1b LINE L1 -915 433 236 2070 98 6 76 chr6 159071602 159071919 -30207635 - AluSx SINE Alu -15 297 3 574 245 113 5 chr6 159072175 159072387 -30207167 - MER102a DNA MER1_type 0 330 96 329 191 116 26 chr6 159072725 159072863 -30206691 + L1ME2 LINE L1 3861 4009 -2137 963 266 86 41 chr6 159072867 159073334 -30206220 - MLT1D LTR MaLR -10 495 8 694 213 6 0 chr6 159073372 159073532 -30206022 + L1ME2 LINE L1 4615 4775 -1371 2109 130 10 0 chr6 159073534 159073835 -30205719 + AluSx SINE Alu 1 304 -8 396 243 116 63 chr6 159073882 159073962 -30205592 + L1ME2 LINE L1 4762 4836 -1310 1760 174 0 0 chr6 159073962 159074264 -30205290 - AluSx SINE Alu 0 302 1 396 243 116 63 chr6 159074264 159074450 -30205104 + L1ME2 LINE L1 4836 5043 -1103 937 184 163 14 chr6 159074456 159074733 -30204821 + MER33 DNA MER1_type 7 324 0 1578 222 57 8 chr6 159074745 159075440 -30204114 + L1ME2 LINE L1 5069 5922 -242 3120 65 17 60 chr6 159075440 159075904 -30203650 - MLT2A1 LTR ERVL 0 444 1 1578 222 57 8 chr6 159075904 159076149 -30203405 + L1ME2 LINE L1 5922 6153 -11 206 206 16 95 chr6 159076333 159076396 -30203158 - MIR SINE MIR -130 78 21 361 333 103 28 chr6 159077006 159077366 -30202188 + L2 LINE L2 671 1057 -2257 624 226 115 12 chr6 159077427 159077565 -30201989 + L1MC4 LINE L1 7047 7169 -719 2271 138 50 37 chr6 159077565 159078049 -30201505 + L1MA8 LINE L1 5802 6291 0 624 226 115 12 chr6 159078049 159078264 -30201290 + L1MC4 LINE L1 7169 7532 -356 826 201 0 0 chr6 159078271 159078415 -30201139 + FRAM SINE Alu 1 143 -33 180 0 0 0 chr6 159078421 159078441 -30201113 + (CAA)n Simple_repeat Simple_repeat 2 21 0 709 250 81 24 chr6 159078455 159078577 -30200977 + L1MC4 LINE L1 7559 7673 -369 2067 114 10 0 chr6 159078577 159078867 -30200687 + AluSg SINE Alu 1 293 -17 709 250 81 24 chr6 159078867 159079076 -30200478 + L1MC4 LINE L1 7673 7909 -133 1460 153 50 47 chr6 159079330 159079651 -30199903 + MLT1A1 LTR MaLR 10 331 -34 2053 100 4 11 chr6 159079659 159079970 -30199584 - AluSg SINE Alu 0 309 1 810 186 0 0 chr6 159080001 159080130 -30199424 - FLAM_C SINE Alu -4 129 1 202 182 36 0 chr6 159080141 159080196 -30199358 + (TA)n Simple_repeat Simple_repeat 2 58 0 326 70 49 63 chr6 159080198 159080340 -30199214 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 237 330 94 12 chr6 159080371 159080489 -30199065 - MIR SINE MIR -70 138 14 204 232 129 41 chr6 159081254 159081355 -30198199 - MIR3 SINE MIR -1 207 101 10739 173 60 24 chr6 159081486 159081883 -30197671 + L1MC3 LINE L1 5198 5579 -2206 2571 88 37 0 chr6 159081883 159082234 -30197320 + THE1B LTR MaLR 1 364 0 10739 173 60 24 chr6 159082234 159083153 -30196401 + L1MC3 LINE L1 5579 6463 -1322 2225 133 0 0 chr6 159083153 159083461 -30196093 - AluSx SINE Alu -4 308 1 10739 173 60 24 chr6 159083461 159083709 -30195845 + L1MC3 LINE L1 6463 6700 -1085 2172 108 64 6 chr6 159083709 159084053 -30195501 + THE1B LTR MaLR 1 364 0 10739 173 60 24 chr6 159084053 159084983 -30194571 + L1MC3 LINE L1 6700 7785 0 2278 101 0 10 chr6 159084992 159085288 -30194266 + AluSx SINE Alu 1 293 -19 190 292 42 0 chr6 159085303 159085351 -30194203 - MER5B DNA MER1_type -54 124 75 235 268 183 21 chr6 159085496 159085638 -30193916 - MER112 DNA MER1_type -93 167 3 195 278 19 0 chr6 159085638 159085692 -30193862 - L2 LINE L2 -80 3233 3179 1628 167 0 42 chr6 159086314 159086602 -30192952 + AluJo SINE Alu 1 276 -36 582 28 0 0 chr6 159086608 159086680 -30192874 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 21 36 0 0 chr6 159087633 159087661 -30191893 + AT_rich Low_complexity Low_complexity 1 28 0 395 204 62 18 chr6 159087682 159087795 -30191759 + L1ME2 LINE L1 6036 6153 -11 423 329 61 0 chr6 159088453 159088617 -30190937 - L1ME4a LINE L1 -294 5827 5654 858 214 63 50 chr6 159088796 159089114 -30190440 + L1MC/D LINE L1 5254 5575 -2233 557 283 63 0 chr6 159089140 159089331 -30190223 + L1MC/D LINE L1 5524 5726 -2082 2647 45 0 6 chr6 159089356 159089668 -30189886 + AluY SINE Alu 1 310 -1 6040 132 12 14 chr6 159089734 159091414 -30188140 - L1PB1 LINE L1 0 6151 4474 1989 133 0 23 chr6 159091506 159091808 -30187746 - AluJb SINE Alu -17 295 1 1878 131 67 0 chr6 159091945 159092227 -30187327 - AluSx SINE Alu -11 301 1 463 224 28 0 chr6 159092640 159092747 -30186807 + MLT1E2 LTR MaLR 515 624 -2 886 229 49 2 chr6 159092752 159093076 -30186478 + MLT1E2-int LTR MaLR 4 440 -1172 624 245 161 6 chr6 159093088 159093411 -30186143 + L1MEc LINE L1 705 1077 -5319 1859 180 31 30 chr6 159094496 159095046 -30184508 - MLT2A2 LTR ERVL -8 546 1 1683 184 0 48 chr6 159096680 159096996 -30182558 + AluJo SINE Alu 1 301 -11 432 258 67 10 chr6 159097369 159097563 -30181991 + L1MEc LINE L1 1123 1327 -4888 1333 188 25 19 chr6 159097669 159097989 -30181565 + L1MB8 LINE L1 4593 4914 -1232 * 1585 158 123 14 chr6 159097981 159098348 -30181206 + L1MB8 LINE L1 5759 6165 -13 694 254 153 35 chr6 159098509 159098687 -30180867 + L1ME3A LINE L1 5260 5416 -754 1954 172 0 3 chr6 159098687 159098990 -30180564 + AluSx SINE Alu 1 302 -10 694 254 153 35 chr6 159098990 159099326 -30180228 + L1ME3A LINE L1 5416 5835 -335 2060 164 0 0 chr6 159099631 159099943 -30179611 + AluSx SINE Alu 1 312 0 2012 129 22 22 chr6 159099979 159100290 -30179264 + AluSx SINE Alu 1 311 -1 205 262 98 0 chr6 159100520 159100581 -30178973 - MIR SINE MIR 0 262 196 22849 59 6 2 chr6 159100582 159104340 -30175214 - L1PA6 LINE L1 -15 6139 2368 1187 79 7 0 chr6 159104430 159104582 -30174972 + AluSp SINE Alu 1 153 -160 988 152 57 29 chr6 159105063 159105273 -30174281 - L1MB3 LINE L1 -9 6174 5959 * 2200 133 51 0 chr6 159105268 159105658 -30173896 - L1MA8 LINE L1 -261 6030 5621 2757 153 0 10 chr6 159105659 159106149 -30173405 - L1MB3 LINE L1 -208 5975 5491 870 162 12 6 chr6 159106325 159106492 -30173062 - MER3 DNA MER1_type -25 184 17 520 292 8 0 chr6 159106818 159106948 -30172606 + L2 LINE L2 3183 3313 0 391 286 99 6 chr6 159107270 159107452 -30172102 + LTR33 LTR ERVL 1 199 -322 2691 118 71 35 chr6 159107995 159108505 -30171049 - L1MA4A LINE L1 -11 6292 5765 23 68 0 0 chr6 159108549 159108593 -30170961 + AT_rich Low_complexity Low_complexity 1 44 0 243 336 113 35 chr6 159108797 159109026 -30170528 - MIR SINE MIR -4 258 12 1746 171 0 11 chr6 159109060 159109388 -30170166 + AluJo SINE Alu 1 325 0 2208 122 0 0 chr6 159110487 159110774 -30168780 + AluSx SINE Alu 1 287 -25 423 52 0 0 chr6 159110774 159110832 -30168722 + (TA)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chr6 159111490 159111513 -30168041 + AT_rich Low_complexity Low_complexity 1 23 0 1455 167 60 37 chr6 159111516 159111785 -30167769 + AluJb SINE Alu 1 275 -37 245 323 0 0 chr6 159112660 159112722 -30166832 + MIR SINE MIR 2 63 -199 525 318 69 37 chr6 159112757 159113134 -30166420 + LTR16A LTR ERVL 62 450 0 323 200 71 0 chr6 159113150 159113220 -30166334 + MIR SINE MIR 78 152 -110 324 135 45 11 chr6 159113285 159113300 -30166254 + GA-rich Low_complexity Low_complexity 3 16 -78 1951 141 43 0 chr6 159113300 159113599 -30165955 + AluJb SINE Alu 1 312 0 324 135 45 11 chr6 159113599 159113672 -30165882 + GA-rich Low_complexity Low_complexity 16 94 0 1638 134 111 23 chr6 159113727 159114070 -30165484 + THE1C LTR MaLR 1 373 -2 26 64 0 0 chr6 159114124 159114171 -30165383 + AT_rich Low_complexity Low_complexity 1 47 0 1347 195 41 22 chr6 159114587 159115051 -30164503 + L1MEc LINE L1 2123 2555 -3660 268 148 49 0 chr6 159115056 159115137 -30164417 + Zaphod DNA AcHobo 749 833 -3198 361 172 46 35 chr6 159115142 159115229 -30164325 - L1MC2 LINE L1 -9 6335 6248 3561 124 94 73 chr6 159115409 159116204 -30163350 - L1MC2 LINE L1 -109 6235 5424 1053 202 133 11 chr6 159116348 159116709 -30162845 + Zaphod DNA AcHobo 3601 4005 -26 212 250 18 0 chr6 159117341 159117397 -30162157 + CT-rich Low_complexity Low_complexity 4 60 0 748 263 68 17 chr6 159117536 159117772 -30161782 + MIR SINE MIR 14 261 -1 352 235 154 25 chr6 159118290 159118452 -30161102 + MIR SINE MIR 34 216 -46 872 162 29 14 chr6 159118454 159118884 -30160670 + GA-rich Low_complexity Low_complexity 1 436 0 1899 129 0 53 chr6 159118942 159119279 -30160275 - AluJb SINE Alu 0 321 1 470 202 0 18 chr6 159120318 159120432 -30159122 + CT-rich Low_complexity Low_complexity 4 115 0 1358 11 0 43 chr6 159120434 159120622 -30158932 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1626 185 3 25 chr6 159120622 159120908 -30158646 - AluJb SINE Alu -32 280 1 1286 243 71 23 chr6 159120988 159121483 -30158071 + MLT2F LTR ERVL 34 597 -66 1546 101 4 4 chr6 159121604 159121832 -30157722 - L1PA14 LINE L1 -2 6159 5932 1192 180 40 3 chr6 159121929 159122334 -30157220 + L1MD2 LINE L1 5074 5491 -746 * 1240 174 18 39 chr6 159122331 159122612 -30156942 + L1MB7 LINE L1 5890 6164 -20 2140 99 7 3 chr6 159122670 159122963 -30156591 + AluY SINE Alu 1 294 -17 2709 207 73 50 chr6 159122964 159123291 -30156263 + L1MD2 LINE L1 5481 5799 -560 2037 149 0 3 chr6 159123291 159123592 -30155962 - AluSx SINE Alu -12 300 1 2709 207 73 50 chr6 159123592 159124110 -30155444 + L1MD2 LINE L1 5799 6346 -13 1662 174 0 59 chr6 159124112 159124433 -30155121 + AluJo SINE Alu 1 302 -10 324 260 31 21 chr6 159124990 159125086 -30154468 + MIR SINE MIR 156 252 -10 224 385 42 10 chr6 159125352 159125544 -30154010 + L2 LINE L2 2560 2757 -557 1353 273 59 18 chr6 159125562 159126053 -30153501 - MLT1J LTR MaLR 0 511 1 314 361 135 14 chr6 159126086 159126374 -30153180 + L2 LINE L2 2592 2914 -400 742 307 68 8 chr6 159127675 159128030 -30151524 + HERV16 LTR ERVL 1052 1427 -3569 6629 140 19 28 chr6 159128098 159129475 -30150079 + L1MA6 LINE L1 4122 5491 -743 3524 82 46 4 chr6 159129480 159129979 -30149575 + LTR17 LTR ERV1 260 779 -1 27137 44 1 0 chr6 159130011 159134076 -30145478 + HERV17 LTR ERV1 1953 6019 -2607 2408 65 0 3 chr6 159134098 159134391 -30145163 + HERV17 LTR ERV1 8335 8626 0 2689 55 0 0 chr6 159134391 159134717 -30144837 + LTR17 LTR ERV1 1 326 -454 5286 112 27 11 chr6 159134728 159135540 -30144014 + L1MA6 LINE L1 5476 6300 0 535 216 64 41 chr6 159135564 159135595 -30143959 - L1ME2 LINE L1 -74 6088 6059 2927 140 26 20 chr6 159135595 159136101 -30143453 + L1MA8 LINE L1 5783 6291 0 535 216 64 41 chr6 159136101 159136240 -30143314 - L1ME2 LINE L1 -103 6059 5914 3536 302 46 23 chr6 159136254 159137740 -30141814 + HERV16 LTR ERVL 1592 3175 -2053 433 333 0 0 chr6 159137731 159137851 -30141703 + HERV16 LTR ERVL 4152 4271 -1383 * 1047 182 63 48 chr6 159137853 159138146 -30141408 - L1MA9 LINE L1 0 6312 6012 371 354 38 17 chr6 159138403 159138640 -30140914 + HERV16 LTR ERVL 4563 4804 -850 1160 257 70 55 chr6 159138712 159138740 -30140814 - L1ME2 LINE L1 -579 5583 5557 2015 161 3 0 chr6 159138740 159139050 -30140504 + AluSx SINE Alu 1 311 -1 1160 257 70 55 chr6 159139050 159139767 -30139787 - L1ME2 LINE L1 -605 5557 4826 555 300 15 77 chr6 159140562 159140952 -30138602 - MER115 DNA AcHobo -327 366 1 1970 78 107 0 chr6 159141369 159141639 -30137915 - AluSq SINE Alu -12 301 3 3194 117 38 8 chr6 159141640 159142111 -30137443 + MER31A LTR ERV1 1 485 0 2290 95 0 7 chr6 159142121 159142416 -30137138 + AluSg SINE Alu 1 293 -17 192 111 0 0 chr6 159142501 159142537 -30137017 + (A)n Simple_repeat Simple_repeat 1 36 0 258 244 0 26 chr6 159143378 159143456 -30136098 - L1ME LINE L1 -663 5501 5426 203 88 29 0 chr6 159143598 159143632 -30135922 + (TG)n Simple_repeat Simple_repeat 2 36 0 230 313 21 0 chr6 159143747 159143843 -30135711 - L1ME LINE L1 -371 5791 5694 1134 253 39 80 chr6 159143849 159144311 -30135243 - L2 LINE L2 -1 3312 2870 342 309 174 11 chr6 159144482 159144764 -30134790 + L2 LINE L2 2805 3132 -181 1989 169 49 9 chr6 159144912 159145261 -30134293 + MLT1A1 LTR MaLR 3 365 0 813 270 15 101 chr6 159146237 159146693 -30132861 + L1MC4a LINE L1 5625 6041 -1767 346 235 93 69 chr6 159147258 159147350 -30132204 + L1ME LINE L1 4408 4496 -1650 1770 154 26 10 chr6 159147350 159147625 -30131929 + AluSx SINE Alu 1 283 -29 923 0 0 9 chr6 159147625 159147733 -30131821 + (GGAAA)n Simple_repeat Simple_repeat 3 109 0 1770 154 26 10 chr6 159147733 159147762 -30131792 + AluSx SINE Alu 283 310 -2 346 235 93 69 chr6 159147762 159147873 -30131681 + L1ME LINE L1 4496 4616 -1530 2167 116 7 0 chr6 159148171 159148472 -30131082 - AluJb SINE Alu -9 303 1 2145 137 87 22 chr6 159148638 159148686 -30130868 + MLT1B LTR MaLR 1 44 -346 1639 107 5 0 chr6 159148686 159148901 -30130653 + AluSg/x SINE Alu 86 301 -11 2145 137 87 22 chr6 159148901 159149218 -30130336 + MLT1B LTR MaLR 44 390 0 1102 260 59 49 chr6 159149390 159150019 -30129535 + L1ME LINE L1 4639 5277 -893 2212 121 20 0 chr6 159150019 159150325 -30129229 + AluSx SINE Alu 1 312 0 1102 260 59 49 chr6 159150325 159150709 -30128845 + L1ME LINE L1 5277 5656 -514 19480 100 18 1 chr6 159150713 159153341 -30126213 + Charlie3 DNA MER1_type 37 2706 -4 316 288 88 25 chr6 159153359 159153519 -30126035 + L1ME LINE L1 5683 5852 -318 273 276 142 22 chr6 159153973 159154107 -30125447 - L2 LINE L2 -189 3083 2934 1706 133 110 3 chr6 159154144 159154452 -30125102 + MER2 DNA MER2_type 1 341 -3 183 367 25 0 chr6 159154578 159154657 -30124897 - MIR SINE MIR -95 113 33 1992 71 52 8 chr6 159154861 159155151 -30124403 + AluSg SINE Alu 1 302 0 762 259 183 26 chr6 159156518 159157009 -30122545 - L2 LINE L2 0 3313 2735 747 169 0 59 chr6 159157010 159157146 -30122408 - FLAM_C SINE Alu -7 136 9 207 204 0 23 chr6 159157152 159157196 -30122358 - L2 LINE L2 -564 2750 2708 1576 127 15 39 chr6 159157223 159157483 -30122071 - AluJo SINE Alu -53 259 6 5343 179 43 63 chr6 159157493 159158875 -30120679 - Charlie1a DNA MER1_type -35 1420 66 564 161 15 92 chr6 159158898 159158993 -30120561 + Charlie1 DNA MER1_type 1785 1869 -892 2350 97 3 0 chr6 159158993 159159302 -30120252 + AluY SINE Alu 2 311 0 564 161 15 92 chr6 159159302 159159336 -30120218 + Charlie1 DNA MER1_type 1869 1904 -857 249 184 0 0 chr6 159159338 159159387 -30120167 - L2 LINE L2 -605 2709 2661 373 312 8 40 chr6 159159697 159159822 -30119732 + L2 LINE L2 3185 3305 -8 276 206 147 0 chr6 159160017 159160085 -30119469 - MIR SINE MIR -111 151 74 2340 85 0 10 chr6 159160898 159161204 -30118350 - AluSg SINE Alu -7 303 1 2323 95 0 25 chr6 159161298 159161615 -30117939 + AluSg SINE Alu 1 309 -1 278 296 123 30 chr6 159161728 159161931 -30117623 - MIR SINE MIR 0 262 41 280 266 97 26 chr6 159163729 159163842 -30115712 + L1MC4 LINE L1 6583 6703 -1339 260 267 47 0 chr6 159163822 159163908 -30115646 - L1MC4 LINE L1 -1339 6703 6614 269 177 0 48 chr6 159163835 159163897 -30115657 + L1MCa LINE L1 2006 2064 -4362 225 247 0 41 chr6 159163895 159163968 -30115586 - L1MCa LINE L1 -4362 2064 1995 * 2939 178 25 33 chr6 159163989 159164601 -30114953 + L1MB4 LINE L1 5573 6179 -1 993 224 0 0 chr6 159164660 159164830 -30114724 - FAM SINE Alu -5 170 1 428 134 0 0 chr6 159164830 159164897 -30114657 + L1MB8 LINE L1 6110 6176 -2 300 231 22 50 chr6 159164937 159165119 -30114435 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 1809 169 0 7 chr6 159165124 159165426 -30114128 - AluJo SINE Alu -12 300 1 488 259 70 32 chr6 159165429 159165614 -30113940 - L1ME3A LINE L1 -298 5872 5681 1999 108 51 96 chr6 159166203 159166556 -30112998 - MER1B DNA MER1_type 0 337 1 1665 167 0 66 chr6 159166780 159167098 -30112456 + AluJb SINE Alu 1 297 -15 2165 124 3 0 chr6 159167104 159167402 -30112152 + AluSx SINE Alu 1 299 -13 294 269 39 0 chr6 159167406 159167484 -30112070 + L2 LINE L2 3192 3272 0 1442 30 0 6 chr6 159168253 159168419 -30111135 - L1PA2 LINE L1 0 6155 5991 2071 126 7 3 chr6 159168884 159169186 -30110368 + AluSq SINE Alu 1 303 -10 1957 141 13 7 chr6 159169296 159169594 -30109960 - AluSx SINE Alu -12 300 1 1870 153 18 0 chr6 159169727 159170009 -30109545 - AluSx SINE Alu -25 287 1 331 143 0 0 chr6 159171008 159171057 -30108497 + Alu SINE Alu 1 49 -252 1650 146 0 20 chr6 159171117 159171254 -30108300 + AluJb SINE Alu 1 132 -180 2630 56 0 0 chr6 159171254 159171560 -30107994 + AluY SINE Alu 1 306 -5 1650 146 0 20 chr6 159171560 159171676 -30107878 + AluJb SINE Alu 132 249 -63 21 36 0 0 chr6 159171697 159171725 -30107829 + AT_rich Low_complexity Low_complexity 1 28 0 304 265 111 17 chr6 159171918 159172035 -30107519 + L2 LINE L2 3179 3306 -7 340 347 32 16 chr6 159172323 159172513 -30107041 - MLT1K LTR MaLR -372 216 24 315 204 183 54 chr6 159172603 159172696 -30106858 + HsTC2 DNA Tc2 14 118 -1780 1372 199 20 20 chr6 159172725 159173017 -30106537 + HsTC2 DNA Tc2 1274 1565 -333 492 231 19 0 chr6 159173017 159173125 -30106429 + HsTC2 DNA Tc2 1786 1895 -3 2314 132 19 35 chr6 159173240 159173610 -30105944 - THE1B LTR MaLR 0 364 1 594 50 40 69 chr6 159174246 159174347 -30105207 + MLT1C LTR MaLR 1 98 -369 2880 109 7 39 chr6 159174347 159174778 -30104776 - MSTC LTR MaLR -4 424 8 1791 182 46 26 chr6 159174784 159175153 -30104401 + MLT1C LTR MaLR 90 467 0 604 313 83 8 chr6 159175808 159176048 -30103506 + MIR SINE MIR 4 261 -1 21 57 0 0 chr6 159176107 159176142 -30103412 + AT_rich Low_complexity Low_complexity 1 35 0 2289 97 3 3 chr6 159176295 159176595 -30102959 - AluSx SINE Alu -12 300 1 2396 149 145 38 chr6 159176715 159177211 -30102343 - MER21A LTR ERV1 -6 925 377 894 160 149 28 chr6 159177217 159177454 -30102100 - MER21A LTR ERV1 -667 264 1 274 249 76 133 chr6 159177790 159178424 -30101130 + L1MC5 LINE L1 7349 7946 -15 201 39 0 0 chr6 159178969 159178995 -30100559 + (A)n Simple_repeat Simple_repeat 1 26 0 1949 162 14 22 chr6 159179459 159179818 -30099736 - MLT1A1 LTR MaLR 0 365 10 3578 102 2 0 chr6 159180280 159180730 -30098824 - MLT2A2 LTR ERVL 0 453 3 29 28 0 0 chr6 159180791 159180827 -30098727 + AT_rich Low_complexity Low_complexity 1 36 0 2583 117 11 19 chr6 159181174 159181467 -30098087 + THE1B LTR MaLR 1 292 -72 2299 117 0 0 chr6 159181467 159181776 -30097778 - AluSx SINE Alu -3 309 1 2583 117 11 19 chr6 159181776 159181849 -30097705 + THE1B LTR MaLR 292 364 0 216 149 0 0 chr6 159182336 159182383 -30097171 + (A)n Simple_repeat Simple_repeat 1 47 0 2324 115 0 0 chr6 159183242 159183546 -30096008 + AluSx SINE Alu 1 304 -8 1230 123 0 0 chr6 159183551 159183722 -30095832 + AluSq SINE Alu 140 310 -3 208 293 24 0 chr6 159184330 159184412 -30095142 + CT-rich Low_complexity Low_complexity 6 89 0 225 170 189 0 chr6 159184578 159184631 -30094923 - L2 LINE L2 0 3313 3251 275 0 29 0 chr6 159184767 159184802 -30094752 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1945 100 63 7 chr6 159184805 159185074 -30094480 - AluSq SINE Alu -29 284 1 216 250 221 0 chr6 159185160 159185300 -30094254 + MIR SINE MIR 49 219 -43 212 277 15 0 chr6 159185683 159185748 -30093806 + MIR SINE MIR 83 148 -114 437 220 107 54 chr6 159185976 159186144 -30093410 + MER69A DNA AcHobo 1 177 0 285 283 30 0 chr6 159186188 159186287 -30093267 - MIR SINE MIR -147 115 14 204 270 61 35 chr6 159187549 159187664 -30091890 - MER5B DNA MER1_type -29 149 32 249 291 142 35 chr6 159188227 159188368 -30091186 - L2 LINE L2 -6 3266 3111 225 0 0 0 chr6 159188546 159188571 -30090983 + (T)n Simple_repeat Simple_repeat 1 25 0 2186 104 0 7 chr6 159188648 159188946 -30090608 - AluSc SINE Alu -13 296 1 298 211 115 0 chr6 159189473 159189577 -30089977 + MIR SINE MIR 72 187 -75 2029 142 0 3 chr6 159190698 159190986 -30088568 + AluJb SINE Alu 6 292 -20 5106 190 38 4 chr6 159191667 159192605 -30086949 + MSTB-int LTR MaLR 682 1651 0 2215 163 61 24 chr6 159192605 159193016 -30086538 + MSTB LTR MaLR 1 426 0 180 0 0 0 chr6 159193245 159193265 -30086289 + (A)n Simple_repeat Simple_repeat 1 20 0 1645 145 0 4 chr6 159193833 159194095 -30085459 + L1MC1 LINE L1 5566 5826 -507 1238 189 38 26 chr6 159194110 159194375 -30085179 + AluJb SINE Alu 30 297 -15 2659 168 46 8 chr6 159194376 159194877 -30084677 + L1MC1 LINE L1 5814 6333 0 225 341 23 0 chr6 159195735 159195823 -30083731 + MIR3 SINE MIR 112 201 -7 414 0 0 0 chr6 159196219 159196265 -30083289 + (CA)n Simple_repeat Simple_repeat 2 47 0 3265 103 11 4 chr6 159196267 159196744 -30082810 - L1PA8 LINE L1 -1 6171 5692 479 258 104 22 chr6 159197178 159197360 -30082194 + MER117 DNA MER1_type 1 197 0 2095 118 11 0 chr6 159197608 159197895 -30081659 + AluSx SINE Alu 1 290 -22 303 281 73 0 chr6 159198461 159198557 -30080997 - L2 LINE L2 0 3272 3170 186 282 205 34 chr6 159198565 159198682 -30080872 - MIR3 SINE MIR -69 139 3 273 57 0 0 chr6 159198736 159198771 -30080783 + (ATTG)n Simple_repeat Simple_repeat 1 35 0 407 230 30 24 chr6 159198990 159199087 -30080467 - MER112 DNA MER1_type -87 173 73 2287 112 29 56 chr6 159199087 159199461 -30080093 + THE1B LTR MaLR 1 364 0 407 230 30 24 chr6 159199461 159199528 -30080026 - MER112 DNA MER1_type -187 73 8 21 36 0 0 chr6 159200027 159200055 -30079499 + AT_rich Low_complexity Low_complexity 1 28 0 1732 176 17 40 chr6 159200131 159200433 -30079121 - AluJo SINE Alu -16 296 2 335 246 66 78 chr6 159201176 159201273 -30078281 + MIR SINE MIR 57 154 -108 2162 145 13 26 chr6 159201273 159201653 -30077901 + THE1C LTR MaLR 1 375 0 10384 124 9 30 chr6 159201653 159203267 -30076287 + THE1C-int LTR MaLR 1 1580 0 1928 148 43 38 chr6 159203267 159203638 -30075916 + THE1C LTR MaLR 1 373 -2 335 246 66 78 chr6 159203638 159203705 -30075849 + MIR SINE MIR 151 221 -41 16407 104 16 23 chr6 159203712 159206136 -30073418 + L1P LINE L1 11 2417 -3729 1900 151 0 3 chr6 159257430 159257737 -30021817 - AluSx SINE Alu 0 306 1 192 359 120 31 chr6 159258357 159258716 -30020838 - L2 LINE L2 -570 2744 2354 * 235 259 19 0 chr6 159258712 159258766 -30020788 + L2 LINE L2 3256 3310 -3 567 307 164 0 chr6 159258768 159258993 -30020561 - MIR SINE MIR 0 262 1 278 116 0 0 chr6 159260097 159260140 -30019414 + AluJ/FLAM SINE Alu 35 77 -225 822 73 0 0 chr6 159260744 159260854 -30018700 + (TTTC)n Simple_repeat Simple_repeat 1 110 0 1812 145 7 0 chr6 159260981 159261257 -30018297 - AluSp SINE Alu -35 278 1 266 233 88 140 chr6 159261726 159261919 -30017635 - MIR SINE MIR -15 247 65 712 277 86 18 chr6 159261967 159262362 -30017192 - LTR16A LTR ERVL 0 450 1 203 189 0 0 chr6 159262864 159262901 -30016653 + A-rich Low_complexity Low_complexity 1 37 0 445 288 24 24 chr6 159262902 159263027 -30016527 + MER5A DNA MER1_type 61 185 -4 273 304 118 25 chr6 159263765 159263926 -30015628 + L2 LINE L2 2917 3092 -180 358 297 94 16 chr6 159264056 159264184 -30015370 - L2 LINE L2 -4 3309 3172 189 0 0 0 chr6 159264410 159264431 -30015123 + (TG)n Simple_repeat Simple_repeat 2 22 0 22 25 0 25 chr6 159264896 159264917 -30014637 + AT_rich Low_complexity Low_complexity 1 22 -17 2017 103 28 11 chr6 159264917 159265199 -30014355 - AluSx SINE Alu -25 287 1 22 25 0 25 chr6 159265199 159265217 -30014337 + AT_rich Low_complexity Low_complexity 22 39 0 2249 107 7 0 chr6 159266262 159266561 -30012993 - AluSx SINE Alu -11 301 1 321 273 25 8 chr6 159266702 159266823 -30012731 - HAL1 LINE L1 -1251 1256 1134 * 1358 272 167 29 chr6 159266817 159267398 -30012156 - HAL1 LINE L1 -1843 664 4 28 29 0 0 chr6 159268141 159268176 -30011378 + AT_rich Low_complexity Low_complexity 1 35 0 1379 128 9 187 chr6 159268184 159268365 -30011189 + AluJo SINE Alu 1 94 -218 2148 109 0 29 chr6 159268365 159268677 -30010877 - AluSx SINE Alu -9 303 1 1379 128 9 187 chr6 159268677 159268838 -30010716 + AluJo SINE Alu 94 282 -30 344 237 101 22 chr6 159268868 159269007 -30010547 + L2 LINE L2 3159 3308 -5 2222 121 0 10 chr6 159269576 159269889 -30009665 - AluSq SINE Alu -3 310 1 2600 58 3 3 chr6 159270065 159270378 -30009176 + AluSp SINE Alu 1 313 0 361 211 112 58 chr6 159270704 159270890 -30008664 - MIR SINE MIR -50 212 16 2235 116 3 0 chr6 159271408 159271718 -30007836 - AluSx SINE Alu -1 311 1 324 120 0 0 chr6 159271735 159271785 -30007769 + (TTCCC)n Simple_repeat Simple_repeat 4 53 0 4971 89 36 29 chr6 159272151 159272497 -30007057 - Tigger4(Zombi) DNA MER2_type 0 2731 2389 1782 186 0 13 chr6 159272497 159272808 -30006746 - AluJb SINE Alu 0 312 6 4971 89 36 29 chr6 159272808 159273213 -30006341 - Tigger4(Zombi) DNA MER2_type -342 2389 1975 21 0 0 0 chr6 159273482 159273503 -30006051 + AT_rich Low_complexity Low_complexity 1 21 0 10877 118 45 66 chr6 159273503 159274123 -30005431 + Tigger4(Zombi) DNA MER2_type 1 633 -2098 1678 157 31 0 chr6 159274123 159274384 -30005170 + AluJo SINE Alu 7 275 -37 10877 118 45 66 chr6 159274384 159275643 -30003911 + Tigger4(Zombi) DNA MER2_type 633 1840 -891 293 239 182 0 chr6 159275745 159275833 -30003721 - MIR SINE MIR -51 211 108 330 206 68 0 chr6 159277035 159277108 -30002446 + MIR SINE MIR 163 240 -22 609 233 68 52 chr6 159277149 159277428 -30002126 - MLT1H LTR MaLR -226 323 14 260 358 36 7 chr6 159277464 159277601 -30001953 - MLT1H-int LTR MaLR -21 1714 1574 476 236 91 68 chr6 159278978 159279197 -30000357 - MLT1H LTR MaLR -263 286 22 1776 162 23 0 chr6 159279205 159279507 -30000047 - AluJb SINE Alu -3 309 1 755 196 8 8 chr6 159279693 159279826 -29999728 + AluJo/FLAM SINE Alu 1 133 -169 1422 185 27 4 chr6 159279829 159280088 -29999466 + AluJb SINE Alu 21 285 -27 1487 118 0 0 chr6 159280254 159280449 -29999105 - AluSx SINE Alu -117 195 1 235 330 0 0 chr6 159280490 159280578 -29998976 + MIR3 SINE MIR 115 202 -6 399 289 145 7 chr6 159281106 159281258 -29998296 + MIR SINE MIR 13 185 -77 2340 93 0 10 chr6 159282309 159282611 -29996943 + AluSg SINE Alu 1 299 -11 566 284 144 18 chr6 159282990 159283212 -29996342 + MIR SINE MIR 3 252 -10 2156 119 15 94 chr6 159283793 159284188 -29995366 - THE1B LTR MaLR 0 364 1 421 327 130 6 chr6 159284439 159284601 -29994953 + MER91A DNA MER1_type 1 182 -14 2954 68 8 0 chr6 159285202 159285554 -29994000 + THE1A LTR MaLR 1 355 0 2326 105 7 0 chr6 159286155 159286460 -29993094 + AluSx SINE Alu 1 307 -5 342 255 248 28 chr6 159286483 159286628 -29992926 + MER5B DNA MER1_type 2 178 0 350 246 49 25 chr6 159287947 159288069 -29991485 - L1ME4a LINE L1 -32 6089 5965 427 287 103 15 chr6 159288183 159288378 -29991176 - L1ME4a LINE L1 -361 5760 5549 5178 92 57 7 chr6 159288563 159289271 -29990283 - L1PA10 LINE L1 0 6168 5426 377 289 141 0 chr6 159289471 159289613 -29989941 + MIR SINE MIR 71 232 -30 186 133 0 0 chr6 159290880 159290910 -29988644 + (T)n Simple_repeat Simple_repeat 1 30 0 1616 23 0 0 chr6 159290989 159291193 -29988361 + L1PA5 LINE L1 5972 6175 0 22 35 0 0 chr6 159293060 159293089 -29986465 + AT_rich Low_complexity Low_complexity 1 29 0 2126 135 0 0 chr6 159293557 159293868 -29985686 - AluY SINE Alu 0 311 1 1830 166 7 0 chr6 159293880 159294164 -29985390 - AluJo SINE Alu -26 286 1 1087 220 87 4 chr6 159295018 159295259 -29984295 + MIR SINE MIR 2 262 0 324 322 54 7 chr6 159296157 159296306 -29983248 + MARNA DNA Mariner 424 579 -7 2023 155 0 0 chr6 159296827 159297137 -29982417 + AluSx SINE Alu 1 310 -2 333 0 0 0 chr6 159297390 159297427 -29982127 + (CA)n Simple_repeat Simple_repeat 2 38 0 392 327 38 57 chr6 159297492 159297659 -29981895 + L2 LINE L2 2565 2725 -589 2397 170 51 18 chr6 159297659 159297727 -29981827 - L1MB2 LINE L1 -2 6169 6105 2213 137 108 59 chr6 159297727 159298135 -29981419 - MSTA LTR MaLR 0 428 1 2397 170 51 18 chr6 159298135 159298518 -29981036 - L1MB2 LINE L1 -66 6105 5703 392 327 38 57 chr6 159298518 159298668 -29980886 + L2 LINE L2 2725 2876 -438 849 201 53 0 chr6 159298669 159298930 -29980624 - FRAM SINE Alu 0 268 1 2261 97 0 31 chr6 159300166 159300485 -29979069 + AluSx SINE Alu 1 309 -3 2286 106 0 7 chr6 159301251 159301554 -29978000 + AluSq SINE Alu 1 301 -12 2259 119 0 6 chr6 159302000 159302312 -29977242 - AluSg SINE Alu 0 310 1 2738 102 16 13 chr6 159303325 159303699 -29975855 - THE1C LTR MaLR 0 375 1 227 290 0 0 chr6 159303738 159303800 -29975754 + L2 LINE L2 2283 2344 -970 350 234 27 45 chr6 159304208 159304319 -29975235 - MER94 DNA DNA -23 111 3 2317 116 0 0 chr6 159304591 159304894 -29974660 + AluSx SINE Alu 3 305 -7 237 230 0 81 chr6 159304898 159305059 -29974495 + A-rich Low_complexity Low_complexity 4 151 0 184 172 16 16 chr6 159306888 159306952 -29972602 + (TA)n Simple_repeat Simple_repeat 1 64 0 615 177 65 8 chr6 159307184 159307308 -29972246 - MER5A DNA MER1_type -56 133 3 799 272 9 127 chr6 159307493 159307544 -29972010 - MLT1L LTR MaLR -224 391 336 2830 138 122 2 chr6 159307544 159307995 -29971559 + LTR10B LTR ERV1 1 505 0 799 272 9 127 chr6 159307995 159308384 -29971170 - MLT1L LTR MaLR -279 336 3 20174 183 25 10 chr6 159308572 159315273 -29964281 - L1PA14 LINE L1 0 6812 7 1035 252 41 11 chr6 159315275 159315545 -29964009 + MER87 LTR ERV1 225 502 -39 376 223 192 0 chr6 159315596 159315726 -29963828 - MIR SINE MIR -56 206 52 528 198 11 0 chr6 159316007 159316098 -29963456 - Tigger7 DNA MER2_type 0 2491 2400 * 1258 209 105 0 chr6 159316091 159316349 -29963205 - Tigger7 DNA MER2_type -447 286 2 864 221 28 28 chr6 159316920 159317137 -29962417 + L1PA16 LINE L1 5947 6163 -3 1904 137 49 0 chr6 159317156 159317441 -29962113 + AluSx SINE Alu 1 299 -13 24 0 0 0 chr6 159317459 159317483 -29962071 + AT_rich Low_complexity Low_complexity 1 24 0 2030 212 111 12 chr6 159317615 159318130 -29961424 - MLT1F1 LTR MaLR -1 566 1 480 339 71 8 chr6 159318358 159318597 -29960957 + LTR67 LTR ERVL 2 255 -302 282 297 0 0 chr6 159318606 159318697 -29960857 - MLT1K LTR MaLR -137 451 361 1193 239 146 69 chr6 159318748 159319305 -29960249 - MLT1G3 LTR MaLR -2 588 33 232 79 53 26 chr6 159319319 159319357 -29960197 + MLT1G1 LTR MaLR 1 39 -556 426 184 9 88 chr6 159319566 159319593 -29959961 + MIR SINE MIR 157 185 -77 1005 198 6 17 chr6 159319593 159319770 -29959784 - FAM SINE Alu 0 175 1 426 184 9 88 chr6 159319770 159319856 -29959698 + MIR SINE MIR 185 261 -1 358 129 24 59 chr6 159321390 159321475 -29958079 + tRNA-Ser-AGC tRNA tRNA 2 83 -2 2364 217 218 58 chr6 159322058 159323089 -29956465 - L1MC4a LINE L1 -109 7699 6504 216 204 0 37 chr6 159323423 159323477 -29956077 + GA-rich Low_complexity Low_complexity 3 54 0 200 158 35 35 chr6 159323854 159323911 -29955643 + (TTAAA)n Simple_repeat Simple_repeat 1 57 0 237 290 0 32 chr6 159325146 159325208 -29954346 + L2 LINE L2 3212 3271 -1 574 289 39 10 chr6 159325282 159325486 -29954068 - MER74B LTR ERVL 0 622 413 1545 114 11 66 chr6 159325486 159325594 -29953960 + L1MA1 LINE L1 6038 6150 -152 1994 162 0 0 chr6 159325594 159325903 -29953651 + AluJb SINE Alu 1 309 -3 1545 114 11 66 chr6 159325903 159326067 -29953487 + L1MA1 LINE L1 6150 6295 -7 706 200 43 7 chr6 159326108 159326248 -29953306 - MER74A LTR ERVL -190 368 224 631 225 0 8 chr6 159326221 159326341 -29953213 - MER74A LTR ERVL -439 119 1 * 1784 131 6 45 chr6 159326438 159326751 -29952803 + AluJb SINE Alu 1 301 -11 553 322 46 33 chr6 159327068 159327304 -29952250 + MIR SINE MIR 20 250 -12 4649 127 50 27 chr6 159327429 159327766 -29951788 + MER72 LTR ERV1 5 333 -389 1791 168 3 13 chr6 159327766 159328064 -29951490 - AluJo SINE Alu -17 295 1 4649 127 50 27 chr6 159328064 159328428 -29951126 + MER72 LTR ERV1 333 722 0 2552 58 0 6 chr6 159329135 159329446 -29950108 - AluY SINE Alu -2 309 1 355 257 26 26 chr6 159329744 159329857 -29949697 - L2 LINE L2 0 3313 3201 339 268 13 13 chr6 159330070 159330140 -29949414 + GA-rich Low_complexity Low_complexity 3 72 -83 2180 122 0 0 chr6 159330140 159330428 -29949126 + AluSc SINE Alu 1 288 -21 339 268 13 13 chr6 159330428 159330510 -29949044 + GA-rich Low_complexity Low_complexity 71 155 0 237 191 21 0 chr6 159330629 159330676 -29948878 + MLT1K LTR MaLR 537 584 -4 1615 256 94 20 chr6 159330896 159331277 -29948277 + MER20B DNA MER1_type 1 435 -348 1995 143 10 0 chr6 159331277 159331570 -29947984 + AluSx SINE Alu 1 296 -16 1615 256 94 20 chr6 159331570 159331730 -29947824 + MER20B DNA MER1_type 435 582 -201 2961 223 153 19 chr6 159331730 159332528 -29947026 - L1MC4a LINE L1 -308 7500 6561 249 33 0 0 chr6 159332528 159332558 -29946996 + (TATG)n Simple_repeat Simple_repeat 2 31 0 2961 223 153 19 chr6 159332558 159332683 -29946871 - L1MC4a LINE L1 -1247 6561 6454 559 294 202 30 chr6 159332884 159333285 -29946269 - L3 LINE CR1 -801 776 307 327 264 55 11 chr6 159333289 159333380 -29946174 - MIR SINE MIR -148 114 20 784 131 0 54 chr6 159333550 159333680 -29945874 - FRAM SINE Alu 0 176 54 1131 263 95 41 chr6 159334713 159335196 -29944358 + MLT1J LTR MaLR 1 509 -2 2285 136 118 5 chr6 159335384 159335767 -29943787 - MSTA LTR MaLR -2 426 1 2194 112 0 10 chr6 159336100 159336394 -29943160 - AluSx SINE Alu -21 291 1 426 189 74 0 chr6 159338529 159338624 -29940930 - MER91C DNA MER1_type -8 132 31 2041 201 8 6 chr6 159338795 159339159 -29940395 + MLT1A1 LTR MaLR 1 365 0 572 250 37 15 chr6 159339159 159339295 -29940259 + MER5B DNA MER1_type 22 160 -18 1480 250 67 93 chr6 159339297 159340015 -29939539 + MER21B LTR ERV1 24 714 -149 770 151 6 29 chr6 159340665 159340844 -29938710 + MLT1A1 LTR MaLR 226 365 0 1736 195 0 7 chr6 159341040 159341410 -29938144 - AluJo SINE Alu 0 368 1 1842 170 10 0 chr6 159341689 159341978 -29937576 + AluJo SINE Alu 1 292 -20 2122 133 3 0 chr6 159342089 159342390 -29937164 + AluSx SINE Alu 1 302 -10 459 48 0 0 chr6 159342498 159342560 -29936994 + (TA)n Simple_repeat Simple_repeat 2 63 0 1167 144 11 5 chr6 159342560 159342747 -29936807 - AluSg/x SINE Alu -4 308 121 2283 107 3 0 chr6 159342766 159343066 -29936488 - AluSp SINE Alu -11 302 2 1778 210 16 8 chr6 159343089 159343461 -29936093 - L1MB8 LINE L1 -202 5976 5602 900 184 0 35 chr6 159343465 159343639 -29935915 - AluJo SINE Alu -24 288 121 1542 194 34 13 chr6 159343645 159344040 -29935514 - L1MB8 LINE L1 -590 5588 5188 1320 221 31 3 chr6 159344058 159344348 -29935206 - AluJo SINE Alu -14 298 1 253 106 0 21 chr6 159344348 159344395 -29935159 - L1MB8 LINE L1 -945 5201 5156 2235 120 3 0 chr6 159344396 159344705 -29934849 - AluSg SINE Alu 0 310 1 9065 164 23 44 chr6 159344720 159345266 -29934288 - L1MA3 LINE L1 -1 7723 7167 1953 119 91 28 chr6 159345266 159345619 -29933935 + THE1C LTR MaLR 1 375 0 9065 164 23 44 chr6 159345619 159347991 -29931563 - L1MA3 LINE L1 -557 7167 4868 * 15764 126 132 25 chr6 159347958 159348076 -29931478 - L1MA3 LINE L1 -4530 3035 2931 2455 80 0 0 chr6 159348076 159348375 -29931179 - AluSx SINE Alu -13 299 1 15764 126 132 25 chr6 159348375 159350986 -29928568 - L1MA3 LINE L1 -4634 2931 13 258 329 37 0 chr6 159351344 159351426 -29928128 + L3 LINE CR1 1010 1094 -483 777 303 100 38 chr6 159351533 159351932 -29927622 + MLT1K LTR MaLR 165 588 0 502 284 73 104 chr6 159351932 159352372 -29927182 + L3 LINE CR1 1093 1518 -59 881 255 163 15 chr6 159352385 159352585 -29926969 + MER113 DNA MER1_type? 13 182 -339 2423 92 0 0 chr6 159352585 159352888 -29926666 + AluSc SINE Alu 1 303 -6 881 255 163 15 chr6 159352888 159353091 -29926463 + MER113 DNA MER1_type? 182 476 -45 391 262 189 16 chr6 159354397 159354519 -29925035 - MER5A DNA MER1_type -21 168 26 293 336 27 9 chr6 159354523 159354633 -29924921 - MER5A DNA MER1_type -1 188 77 296 279 118 88 chr6 159354786 159354928 -29924626 - L2 LINE L2 -30 3283 3128 3012 142 25 0 chr6 159354928 159355364 -29924190 - MER83 LTR ERV1 -1 447 1 296 279 118 88 chr6 159355364 159355483 -29924071 - L2 LINE L2 -185 3128 3014 421 306 76 0 chr6 159355782 159355926 -29923628 - MIR SINE MIR -56 206 52 21 0 0 0 chr6 159356005 159356026 -29923528 + AT_rich Low_complexity Low_complexity 1 21 0 2036 201 108 14 chr6 159356107 159356534 -29923020 - MLT1C LTR MaLR 0 467 1 308 140 20 0 chr6 159356653 159356703 -29922851 - LTR54B LTR ERV1 -447 51 1 439 267 130 0 chr6 159356772 159356918 -29922636 - MIR SINE MIR -13 249 85 26 0 0 0 chr6 159357515 159357541 -29922013 + AT_rich Low_complexity Low_complexity 1 26 0 365 288 151 14 chr6 159357643 159357789 -29921765 - MIR SINE MIR -95 167 2 442 344 91 0 chr6 159357981 159358167 -29921387 + MIR SINE MIR 47 249 -13 249 130 22 0 chr6 159358193 159358239 -29921315 - L1ME LINE L1 -361 5805 5759 1006 178 144 14 chr6 159358241 159358645 -29920909 + LTR54B LTR ERV1 1 510 0 1125 235 65 0 chr6 159358645 159358905 -29920649 - L1ME LINE L1 -411 5755 5479 189 107 0 0 chr6 159358905 159358933 -29920621 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 4520 149 35 65 chr6 159358939 159359164 -29920390 - L1MB2 LINE L1 -3 6168 5938 243 0 0 0 chr6 159359164 159359191 -29920363 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2157 106 3 0 chr6 159359191 159359474 -29920080 - AluSx SINE Alu -28 284 1 4520 149 35 65 chr6 159359474 159360266 -29919288 - L1MB2 LINE L1 -231 5940 5185 189 0 0 0 chr6 159360266 159360287 -29919267 + (TG)n Simple_repeat Simple_repeat 2 22 0 862 203 6 0 chr6 159360287 159360450 -29919104 - FRAM SINE Alu -12 164 1 1069 186 25 45 chr6 159360450 159360692 -29918862 - L1MB2 LINE L1 -956 5190 4954 1036 184 0 0 chr6 159360693 159360856 -29918698 - FRAM SINE Alu -13 163 1 2906 219 9 18 chr6 159360874 159361537 -29918017 - L1MB2 LINE L1 -1980 4166 3510 2070 151 7 0 chr6 159361554 159361859 -29917695 - AluSx SINE Alu -5 307 1 180 0 0 0 chr6 159361863 159361883 -29917671 + (T)n Simple_repeat Simple_repeat 1 20 0 1490 171 19 81 chr6 159362635 159362806 -29916748 - L1MB2 LINE L1 -2634 3512 3332 1558 233 15 32 chr6 159362806 159363209 -29916345 - MSTD LTR MaLR 0 396 1 1490 171 19 81 chr6 159363209 159363261 -29916293 - L1MB2 LINE L1 -2814 3332 3278 2431 74 0 16 chr6 159363261 159363571 -29915983 + AluY SINE Alu 1 305 -6 1490 171 19 81 chr6 159363571 159363767 -29915787 - L1MB2 LINE L1 -2868 3278 3118 1865 166 0 7 chr6 159363794 159364095 -29915459 - AluJb SINE Alu -13 299 1 320 329 82 41 chr6 159364945 159365091 -29914463 - L2 LINE L2 -5 3267 3116 1755 174 13 10 chr6 159366164 159366475 -29913079 + AluJb SINE Alu 1 312 0 246 32 0 0 chr6 159366529 159366560 -29912994 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1534 148 71 57 chr6 159366577 159366700 -29912854 + AluJo SINE Alu 6 126 -186 1572 105 9 0 chr6 159366700 159366910 -29912644 + AluSg/x SINE Alu 91 302 -10 1534 148 71 57 chr6 159366910 159367083 -29912471 + AluJo SINE Alu 126 306 -6 205 270 48 0 chr6 159367148 159367211 -29912343 + G-rich Low_complexity Low_complexity 3 68 0 450 299 44 7 chr6 159367480 159367617 -29911937 - MIR SINE MIR -26 236 95 206 350 34 34 chr6 159367723 159367840 -29911714 + MIR3 SINE MIR 2 118 -90 1966 171 10 39 chr6 159367840 159368107 -29911447 - MLT1A2 LTR MaLR 0 374 120 2705 98 50 0 chr6 159368107 159368466 -29911088 + MER51B LTR ERV1 1 377 0 1966 171 10 39 chr6 159368466 159368583 -29910971 - MLT1A2 LTR MaLR -254 120 1 194 226 177 0 chr6 159368590 159368652 -29910902 + MIR SINE MIR 120 192 -70 318 258 237 26 chr6 159368760 159368950 -29910604 - MIR SINE MIR -12 250 21 205 88 29 0 chr6 159370779 159370813 -29908741 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr6 159370896 159370917 -29908637 + AT_rich Low_complexity Low_complexity 1 21 0 450 326 7 20 chr6 159371427 159371574 -29907980 - MIR3 SINE MIR -6 202 58 553 167 0 0 chr6 159371690 159371786 -29907768 - L1MB3 LINE L1 -3 6180 6085 437 278 40 49 chr6 159371786 159371998 -29907556 - L1MEc LINE L1 -4142 2254 2043 237 273 0 0 chr6 159371998 159372053 -29907501 + (TA)n Simple_repeat Simple_repeat 2 56 0 1057 113 7 0 chr6 159372157 159372307 -29907247 - L1PB1 LINE L1 -1 6150 6000 2146 119 0 3 chr6 159372379 159372673 -29906881 + AluSg SINE Alu 1 293 -17 200 143 63 79 chr6 159372736 159372799 -29906755 - L2 LINE L2 -85 3228 3167 215 355 121 30 chr6 159373110 159373358 -29906196 - L2 LINE L2 -540 2774 2550 2289 85 3 0 chr6 159373358 159373651 -29905903 + AluY SINE Alu 2 295 -16 215 355 121 30 chr6 159373651 159373833 -29905721 - L2 LINE L2 -764 2550 2305 429 205 23 46 chr6 159374429 159374644 -29904910 - ORSL DNA AcHobo 0 275 1 1785 263 86 45 chr6 159374742 159374754 -29904800 - HAL1 LINE L1 -4 2503 2493 291 71 0 0 chr6 159374754 159374796 -29904758 + (TA)n Simple_repeat Simple_repeat 2 43 0 2412 81 3 25 chr6 159374801 159375121 -29904433 - AluSp SINE Alu 0 313 1 1785 263 86 45 chr6 159375121 159375919 -29903635 - HAL1 LINE L1 -17 2490 1646 2273 97 0 3 chr6 159375919 159376219 -29903335 - AluY SINE Alu -12 299 1 1785 263 86 45 chr6 159376219 159376278 -29903276 - HAL1 LINE L1 -861 1646 1591 2309 104 3 3 chr6 159376280 159376615 -29902939 + L1PA11 LINE L1 4681 5015 -1131 1537 78 23 37 chr6 159376616 159376833 -29902721 + AluSx SINE Alu 1 214 -98 3381 77 7 14 chr6 159376833 159377272 -29902282 + L1PA11 LINE L1 5738 6173 -1 2206 241 107 109 chr6 159377285 159377473 -29902081 - HAL1 LINE L1 -905 1602 1415 1838 204 8 22 chr6 159377473 159377841 -29901713 - MLT1A1 LTR MaLR 0 365 3 2206 241 107 109 chr6 159377841 159378228 -29901326 - HAL1 LINE L1 -1092 1415 1029 360 0 0 0 chr6 159378228 159378268 -29901286 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2206 241 107 109 chr6 159378268 159378285 -29901269 - HAL1 LINE L1 -1478 1029 1013 1772 174 7 7 chr6 159378285 159378579 -29900975 + AluJb SINE Alu 1 294 -18 2276 95 3 19 chr6 159378584 159378901 -29900653 + AluSx SINE Alu 1 312 0 2802 88 6 3 chr6 159378911 159379265 -29900289 - THE1A LTR MaLR 0 355 1 486 185 141 0 chr6 159379265 159379357 -29900197 - FLAM_A SINE Alu -32 110 6 2206 241 107 109 chr6 159379357 159380259 -29899295 - HAL1 LINE L1 -1505 1002 1 1113 162 29 5 chr6 159380306 159380510 -29899044 + AluJb SINE Alu 88 296 -16 1380 127 16 2 chr6 159380518 159380764 -29898790 + AluJb SINE Alu 1 300 -12 2145 148 45 57 chr6 159380880 159381114 -29898440 - MSTB1 LTR MaLR -12 420 192 2087 96 4 0 chr6 159381114 159381386 -29898168 - AluSp SINE Alu -20 293 21 2145 148 45 57 chr6 159381386 159381576 -29897978 - MSTB1 LTR MaLR -240 192 1 2491 87 0 0 chr6 159381715 159382025 -29897529 + AluY SINE Alu 1 310 -1 1752 135 0 49 chr6 159383074 159383378 -29896176 - AluJb SINE Alu -23 289 1 439 331 27 63 chr6 159384409 159384744 -29894810 - MLT1K LTR MaLR -261 327 5 394 335 87 69 chr6 159384751 159385026 -29894528 + L2 LINE L2 2993 3272 0 365 269 157 0 chr6 159385100 159385234 -29894320 - MIR SINE MIR -33 229 75 2617 55 0 0 chr6 159385486 159385797 -29893757 + AluY SINE Alu 1 311 0 389 239 102 42 chr6 159386423 159386590 -29892964 + MER5A DNA MER1_type 1 177 -12 252 227 0 27 chr6 159387048 159387123 -29892431 + (TA)n Simple_repeat Simple_repeat 1 73 0 266 73 24 0 chr6 159387560 159387601 -29891953 + (TCCC)n Simple_repeat Simple_repeat 2 43 0 2075 137 10 0 chr6 159387605 159387911 -29891643 - AluSx SINE Alu -3 309 1 362 65 0 0 chr6 159388390 159388436 -29891118 + AluY SINE Alu 1 46 -256 1522 65 15 0 chr6 159388436 159388637 -29890917 + AluY SINE Alu 106 309 -2 317 327 101 9 chr6 159388657 159388874 -29890680 + L2 LINE L2 3077 3313 0 22 0 0 0 chr6 159391955 159391977 -29887577 + GC_rich Low_complexity Low_complexity 1 22 0 1728 114 0 20 chr6 159393688 159393934 -29885620 - AluSx SINE Alu -10 302 62 686 156 0 0 chr6 159393934 159394030 -29885524 - AluS SINE Alu -215 97 2 411 288 92 58 chr6 159394030 159394356 -29885198 + L2 LINE L2 2287 2623 -691 198 0 0 0 chr6 159394388 159394410 -29885144 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 838 140 0 0 chr6 159394434 159394548 -29885006 - AluJb SINE Alu -193 119 6 2212 110 0 17 chr6 159394585 159394885 -29884669 - AluSq SINE Alu -18 295 1 215 301 0 0 chr6 159394933 159395006 -29884548 + (TA)n Simple_repeat Simple_repeat 2 74 0 1143 255 124 23 chr6 159395015 159395497 -29884057 - L1MC4 LINE L1 -157 7885 7355 299 221 48 29 chr6 159395518 159395622 -29883932 - L1MC4 LINE L1 -3 8039 7934 583 316 41 94 chr6 159395622 159395684 -29883870 + L2 LINE L2 2615 2679 -593 2378 84 0 37 chr6 159395684 159396005 -29883549 - AluSg SINE Alu -1 309 1 583 316 41 94 chr6 159396005 159396596 -29882958 + L2 LINE L2 2679 3268 -4 427 282 55 3 chr6 159397437 159397579 -29881975 + MER5B DNA MER1_type 2 174 -15 22 35 0 0 chr6 159398344 159398373 -29881181 + AT_rich Low_complexity Low_complexity 1 29 0 392 277 94 15 chr6 159398385 159398587 -29880967 + L1ME4a LINE L1 5555 5772 -349 245 29 0 29 chr6 159398817 159398852 -29880702 + (TG)n Simple_repeat Simple_repeat 1 34 0 263 198 160 9 chr6 159398941 159399047 -29880507 + L1ME4a LINE L1 5981 6102 -19 34 0 0 0 chr6 159399717 159399751 -29879803 + AT_rich Low_complexity Low_complexity 1 34 0 243 242 16 0 chr6 159400583 159400645 -29878909 - L3 LINE CR1 -87 1490 1428 602 283 165 27 chr6 159400781 159401056 -29878498 + L2 LINE L2 2881 3223 -90 2355 136 15 0 chr6 159401056 159401388 -29878166 + MER1B DNA MER1_type 1 337 0 602 283 165 27 chr6 159401388 159401487 -29878067 + L2 LINE L2 3223 3307 -6 346 301 0 0 chr6 159401489 159401572 -29877982 - MIR SINE MIR -170 92 10 26 50 0 0 chr6 159402196 159402236 -29877318 + AT_rich Low_complexity Low_complexity 1 40 0 236 269 15 0 chr6 159404116 159404183 -29875371 - MER5A DNA MER1_type -70 119 52 191 160 20 40 chr6 159404146 159404196 -29875358 + MER5A DNA MER1_type 113 161 -28 * 2048 135 0 20 chr6 159405018 159405321 -29874233 - AluSx SINE Alu -15 297 1 24 53 0 0 chr6 159405874 159405912 -29873642 + AT_rich Low_complexity Low_complexity 1 38 0 1930 149 33 0 chr6 159406464 159406765 -29872789 - AluSx SINE Alu -1 311 1 2303 93 3 0 chr6 159407160 159407450 -29872104 + AluSx SINE Alu 1 291 -21 343 311 131 56 chr6 159407504 159407809 -29871745 - L2 LINE L2 -2 3270 2943 250 309 107 40 chr6 159407836 159408134 -29871420 - L2 LINE L2 -447 2867 2550 293 298 139 19 chr6 159409446 159409604 -29869950 - L2 LINE L2 -177 3095 2919 41 21 0 0 chr6 159409725 159409773 -29869781 + AT_rich Low_complexity Low_complexity 1 48 0 1502 129 0 14 chr6 159409866 159410083 -29869471 - AluSq SINE Alu -16 297 84 564 266 148 53 chr6 159410439 159410837 -29868717 - LTR16A LTR ERVL 0 457 22 1920 139 3 30 chr6 159411705 159412008 -29867546 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr6 159412749 159412770 -29866784 + AT_rich Low_complexity Low_complexity 1 21 0 776 278 174 10 chr6 159412878 159413285 -29866269 + L2 LINE L2 396 869 -2445 1469 139 30 13 chr6 159413294 159413524 -29866030 - AluJb SINE Alu -78 234 1 3630 233 173 13 chr6 159413524 159414793 -29864761 + L2 LINE L2 1383 2853 -461 512 230 268 24 chr6 159414875 159415088 -29864466 + L2 LINE L2 3031 3295 -18 669 175 0 44 chr6 159415136 159415188 -29864366 + AluJb SINE Alu 87 140 -172 2305 91 7 0 chr6 159415188 159415485 -29864069 + AluSp SINE Alu 3 301 -12 669 175 0 44 chr6 159415485 159415546 -29864008 + AluJb SINE Alu 140 195 -117 930 149 7 0 chr6 159415564 159415740 -29863814 + AluSg/x SINE Alu 137 313 0 477 308 6 41 chr6 159416396 159416568 -29862986 + MIR3 SINE MIR 19 184 -24 593 247 108 6 chr6 159416943 159417075 -29862479 + MIR SINE MIR 69 223 -39 2565 48 3 0 chr6 159417075 159417370 -29862184 + AluY SINE Alu 1 296 -15 593 247 108 6 chr6 159417370 159417403 -29862151 + MIR SINE MIR 223 251 -11 753 263 61 68 chr6 159417832 159418232 -29861322 - MLT1J LTR MaLR 0 476 105 368 344 15 8 chr6 159418668 159418799 -29860755 - MER115 DNA AcHobo -560 133 2 1493 200 47 22 chr6 159419455 159419775 -29859779 - MER46C DNA MER2_type -10 328 1 187 259 129 60 chr6 159419810 159419876 -29859678 - MIR SINE MIR -53 209 149 222 105 0 0 chr6 159419876 159419914 -29859640 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 187 259 129 60 chr6 159419914 159419963 -29859591 - MIR SINE MIR -113 149 86 825 137 15 0 chr6 159421000 159421131 -29858423 + FLAM_C SINE Alu 1 133 -10 252 330 30 10 chr6 159421635 159421735 -29857819 - MIR SINE MIR -35 227 126 2159 112 30 0 chr6 159422332 159422628 -29856926 - AluSq SINE Alu -8 305 1 26 0 0 0 chr6 159422694 159422720 -29856834 + AT_rich Low_complexity Low_complexity 1 26 0 1067 176 0 0 chr6 159423216 159423392 -29856162 - AluSg/x SINE Alu -2 310 135 180 0 0 0 chr6 159423392 159423412 -29856142 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2191 102 0 0 chr6 159423412 159423695 -29855859 - AluSx SINE Alu -29 283 1 1842 172 7 0 chr6 159423720 159424023 -29855531 + AluJb SINE Alu 1 305 -7 27 49 0 0 chr6 159424028 159424069 -29855485 + AT_rich Low_complexity Low_complexity 1 41 0 1484 163 82 0 chr6 159424532 159424777 -29854777 - AluJb SINE Alu -45 267 3 2219 115 0 0 chr6 159424788 159425083 -29854471 - AluSg SINE Alu -15 295 1 180 111 0 0 chr6 159425222 159425249 -29854305 + (TTA)n Simple_repeat Simple_repeat 1 27 0 238 235 25 49 chr6 159426134 159426215 -29853339 - L1MC4 LINE L1 -1350 6692 6614 756 234 43 21 chr6 159426227 159426393 -29853161 - MIR SINE MIR -59 203 42 2455 81 0 7 chr6 159426393 159426701 -29852853 - AluSg SINE Alu -4 306 1 1977 118 31 0 chr6 159426701 159426989 -29852565 - AluSq SINE Alu -16 297 1 756 234 43 21 chr6 159426989 159427009 -29852545 - MIR SINE MIR -219 43 12 2608 36 0 16 chr6 159427588 159427891 -29851663 + AluY SINE Alu 1 298 -13 28 0 0 0 chr6 159429148 159429176 -29850378 + AT_rich Low_complexity Low_complexity 1 28 0 2582 160 2 15 chr6 159430095 159430496 -29849058 + MSTD LTR MaLR 1 396 0 236 330 116 6 chr6 159430571 159430744 -29848810 + HAL1 LINE L1 742 933 -1574 573 184 35 7 chr6 159430754 159430895 -29848659 + HAL1 LINE L1 975 1119 -1388 263 261 52 9 chr6 159430918 159431033 -29848521 + HAL1 LINE L1 2270 2389 -118 206 221 26 91 chr6 159431702 159431779 -29847775 - L3 LINE CR1 -7 1570 1499 242 260 0 0 chr6 159432108 159432158 -29847396 + G-rich Low_complexity Low_complexity 1 50 0 2177 79 4 4 chr6 159432603 159432917 -29846637 + AluSq SINE Alu 11 324 0 690 175 62 17 chr6 159433138 159433315 -29846239 - MER34B LTR ERV1 -80 485 301 25 83 0 0 chr6 159433457 159433517 -29846037 + AT_rich Low_complexity Low_complexity 1 60 0 1346 219 123 20 chr6 159433686 159433724 -29845830 - Charlie4a DNA MER1_type -1477 484 451 2066 130 0 3 chr6 159433724 159434016 -29845538 - AluSx SINE Alu -21 291 1 2365 91 0 3 chr6 159434016 159434312 -29845242 - AluSc SINE Alu -14 295 1 1346 219 123 20 chr6 159434312 159434679 -29844875 - Charlie4a DNA MER1_type -1509 452 36 254 159 159 43 chr6 159436238 159436307 -29843247 + L2 LINE L2 3196 3272 0 484 280 87 93 chr6 159436882 159437260 -29842294 + L2 LINE L2 2854 3229 -43 267 31 0 0 chr6 159437284 159437316 -29842238 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 2009 121 0 24 chr6 159437836 159438172 -29841382 - AluSx SINE Alu 0 329 1 353 200 0 14 chr6 159438829 159438899 -29840655 - L2 LINE L2 0 3313 3245 22 35 0 0 chr6 159441650 159441679 -29837875 + AT_rich Low_complexity Low_complexity 1 29 0 733 60 17 0 chr6 159442036 159442152 -29837402 + (CA)n Simple_repeat Simple_repeat 1 118 0 2163 116 0 0 chr6 159442539 159442846 -29836708 - AluSx SINE Alu 0 307 1 746 246 27 107 chr6 159443705 159444071 -29835483 + MER46C DNA MER2_type 1 337 -1 886 216 41 57 chr6 159444295 159444540 -29835014 + L1MC4a LINE L1 7567 7807 -1 2031 125 3 20 chr6 159444817 159445121 -29834433 + AluSx SINE Alu 1 299 -13 3294 163 22 12 chr6 159447031 159447266 -29832288 + L1MB8 LINE L1 5405 5636 -548 339 25 0 0 chr6 159447266 159447306 -29832248 + (CA)n Simple_repeat Simple_repeat 2 41 0 3294 163 22 12 chr6 159447306 159447659 -29831895 + L1MB8 LINE L1 5636 5999 -185 552 179 0 0 chr6 159447661 159447767 -29831787 + L1MB8 LINE L1 6064 6169 -9 297 248 20 45 chr6 159447839 159447953 -29831601 - MIR SINE MIR -56 152 73 1376 99 63 0 chr6 159448244 159448295 -29831259 + AluSq SINE Alu 72 118 -195 423 0 0 0 chr6 159448295 159448342 -29831212 + (CA)n Simple_repeat Simple_repeat 2 48 0 1376 99 63 0 chr6 159448342 159448481 -29831073 + AluSq SINE Alu 118 274 -39 180 0 0 0 chr6 159449022 159449042 -29830512 + (A)n Simple_repeat Simple_repeat 1 20 0 1734 186 7 0 chr6 159450324 159450609 -29828945 + AluJo SINE Alu 1 287 -25 2515 84 0 0 chr6 159450827 159451135 -29828419 + AluSx SINE Alu 1 308 -4 22 35 0 0 chr6 159451440 159451469 -29828085 + AT_rich Low_complexity Low_complexity 1 29 0 2113 109 3 10 chr6 159451470 159451763 -29827791 + AluSx SINE Alu 1 291 -21 484 53 26 0 chr6 159451782 159451858 -29827696 + (TCTA)n Simple_repeat Simple_repeat 2 79 0 211 313 183 0 chr6 159452141 159452272 -29827282 - MER5B DNA MER1_type -4 174 20 380 270 48 16 chr6 159452292 159452418 -29827136 + L2 LINE L2 3143 3272 0 1959 157 3 10 chr6 159452765 159453077 -29826477 - AluJb SINE Alu -2 310 1 193 398 65 0 chr6 159453139 159453247 -29826307 - L2 LINE L2 0 3272 3158 2359 91 7 0 chr6 159453585 159453894 -29825660 + AluSp SINE Alu 1 311 -2 2473 50 3 0 chr6 159453941 159454239 -29825315 - AluY SINE Alu -12 299 1 189 352 0 28 chr6 159506804 159506875 -29772679 - MIR3 SINE MIR -35 173 105 944 130 0 14 chr6 159507365 159507503 -29772051 + AluY SINE Alu 1 136 -175 1419 305 119 56 chr6 159507605 159508520 -29771034 + L2 LINE L2 1863 2888 -425 2186 138 19 24 chr6 159508520 159508896 -29770658 + THE1C LTR MaLR 1 374 -1 1419 305 119 56 chr6 159508896 159509342 -29770212 + L2 LINE L2 2888 3304 -9 23 0 0 0 chr6 159510247 159510270 -29769284 + AT_rich Low_complexity Low_complexity 1 23 0 5691 94 20 7 chr6 159510361 159511199 -29768355 + L1PA10 LINE L1 5335 6168 0 237 319 21 57 chr6 159511649 159511790 -29767764 - MIR3 SINE MIR -62 146 11 218 359 0 0 chr6 159511941 159512019 -29767535 + (TA)n Simple_repeat Simple_repeat 1 78 0 226 122 49 0 chr6 159512021 159512062 -29767492 + L1MC4 LINE L1 6661 6703 -1339 236 65 0 0 chr6 159512113 159512159 -29767395 + LTR66 LTR ERVL 394 439 -171 294 336 14 21 chr6 159512159 159512299 -29767255 + (CATA)n Simple_repeat Simple_repeat 4 142 0 682 241 93 0 chr6 159512913 159513075 -29766479 + MER45A DNA AcHobo 2 178 0 1304 270 270 23 chr6 159513322 159514100 -29765454 + L2 LINE L2 2008 2977 -337 251 277 15 0 chr6 159514106 159514171 -29765383 + CT-rich Low_complexity Low_complexity 2 67 0 23 0 0 0 chr6 159514856 159514879 -29764675 + AT_rich Low_complexity Low_complexity 1 23 0 650 298 65 18 chr6 159515278 159515629 -29763925 - L1ME LINE L1 -298 5823 5458 2357 97 0 3 chr6 159516067 159516378 -29763176 - AluSg SINE Alu 0 310 1 405 171 0 14 chr6 159516875 159516945 -29762609 - AluS SINE Alu -239 74 6 1793 195 0 0 chr6 159517359 159517646 -29761908 - AluJo SINE Alu -23 289 3 35 24 0 0 chr6 159519012 159519054 -29760500 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr6 159519122 159519143 -29760411 + AT_rich Low_complexity Low_complexity 1 21 0 259 258 21 0 chr6 159519777 159519874 -29759680 + (TA)n Simple_repeat Simple_repeat 2 100 0 2350 72 7 10 chr6 159519956 159520260 -29759294 + AluY SINE Alu 1 303 -8 1891 166 0 3 chr6 159521327 159521640 -29757914 + AluSx SINE Alu 1 312 0 780 268 43 17 chr6 159522047 159522282 -29757272 + L2 LINE L2 2224 2464 -850 254 277 59 10 chr6 159522423 159522524 -29757030 + L1MC4 LINE L1 7924 8029 -13 1144 305 15 6 chr6 159522529 159522870 -29756684 + L2 LINE L2 2544 2887 -427 201 94 0 0 chr6 159523209 159523241 -29756313 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 454 325 111 42 chr6 159523248 159523831 -29755723 - L2 LINE L2 -20 3252 2626 224 313 105 45 chr6 159523889 159524337 -29755217 - L2 LINE L2 -1025 2289 1815 2094 138 0 25 chr6 159525490 159525810 -29753744 - AluSx SINE Alu 0 312 1 249 270 130 70 chr6 159525986 159526101 -29753453 + L2 LINE L2 3137 3258 -14 397 247 149 38 chr6 159526512 159526766 -29752788 - MLT1H LTR MaLR 0 555 249 642 266 26 0 chr6 159526770 159526924 -29752630 + MER3 DNA MER1_type 52 209 0 478 273 77 16 chr6 159526924 159527104 -29752450 - MLT1H LTR MaLR -358 191 1 590 308 88 20 chr6 159527111 159527361 -29752193 - L2 LINE L2 -200 3113 2847 1632 136 109 18 chr6 159527554 159527885 -29751669 + MER46B DNA MER2_type 1 236 0 1817 159 11 0 chr6 159528021 159528304 -29751250 + AluJo SINE Alu 1 286 -26 24 67 0 0 chr6 159528525 159528570 -29750984 + AT_rich Low_complexity Low_complexity 1 45 0 497 254 181 15 chr6 159529702 159529907 -29749647 + L2 LINE L2 2707 2945 -369 2135 115 10 3 chr6 159529927 159530232 -29749322 - AluSp SINE Alu -6 307 1 1504 160 46 21 chr6 159531058 159531340 -29748214 - AluJo SINE Alu -23 289 1 1368 113 10 15 chr6 159531649 159531853 -29747701 + AluSg/x SINE Alu 96 298 -14 5186 130 62 5 chr6 159532673 159533527 -29746027 - MER4D LTR ERV1 0 903 1 13277 132 33 14 chr6 159534397 159536602 -29742952 + Tigger1 DNA MER2_type 1 2246 -172 2117 158 26 40 chr6 159536602 159536728 -29742826 - MER6 DNA MER2_type 0 865 739 2080 115 0 32 chr6 159536728 159537041 -29742513 - AluSx SINE Alu -9 303 1 2117 158 26 40 chr6 159537041 159537339 -29742215 - MER6 DNA MER2_type -126 739 447 538 156 8 123 chr6 159537340 159537462 -29742092 - MER6 DNA MER2_type -757 108 1 * 864 136 99 12 chr6 159537462 159537622 -29741932 + Tigger1 DNA MER2_type 2245 2418 0 405 278 173 6 chr6 159537884 159538057 -29741497 - L1ME LINE L1 -460 5661 5460 2168 113 3 3 chr6 159539301 159539611 -29739943 + AluSq SINE Alu 1 310 -3 403 233 129 0 chr6 159541969 159542085 -29737469 - MER103 DNA DNA -17 149 19 427 306 27 0 chr6 159542522 159542633 -29736921 - MER81 DNA DNA 0 114 1 2034 160 40 9 chr6 159542691 159543041 -29736513 + MLT2D LTR ERVL 1 361 -53 800 272 57 50 chr6 159543042 159543343 -29736211 + L1MA7 LINE L1 1224 1526 -5970 651 259 49 8 chr6 159543512 159543778 -29735776 + L1MA7 LINE L1 3354 3630 -3935 13642 200 33 20 chr6 159543780 159545264 -29734290 + L1MA7 LINE L1 3574 5036 -2674 2187 113 0 3 chr6 159545264 159545549 -29734005 + AluSx SINE Alu 3 288 -24 228 35 0 0 chr6 159545549 159545578 -29733976 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 13642 200 33 20 chr6 159545585 159548187 -29731367 + L1MA7 LINE L1 5036 7710 0 1043 218 80 19 chr6 159548182 159548444 -29731110 + L1ME1 LINE L1 5884 6161 -5 * 26 0 0 0 chr6 159549829 159549855 -29729699 + AT_rich Low_complexity Low_complexity 1 26 0 789 300 82 61 chr6 159550139 159550731 -29728823 + L2 LINE L2 2396 3001 -312 225 209 75 15 chr6 159551200 159551267 -29728287 - L1MB5 LINE L1 0 6174 6104 332 205 0 64 chr6 159552708 159552786 -29726768 + AluS SINE Alu 228 300 -2 1947 137 0 0 chr6 159552924 159553195 -29726359 - AluSx SINE Alu -41 271 1 249 200 11 74 chr6 159553430 159553525 -29726029 + L1MC4 LINE L1 7943 8031 -11 24 77 0 0 chr6 159554257 159554309 -29725245 + AT_rich Low_complexity Low_complexity 1 52 0 240 86 0 0 chr6 159554770 159554805 -29724749 + (TGG)n Simple_repeat Simple_repeat 1 35 0 451 327 73 29 chr6 159555218 159555493 -29724061 - L2 LINE L2 -469 2845 2559 22 0 0 0 chr6 159555872 159555894 -29723660 + AT_rich Low_complexity Low_complexity 1 22 0 871 189 44 36 chr6 159556237 159556485 -29723069 - L1MB8 LINE L1 -5 6173 5924 227 79 26 0 chr6 159557352 159557390 -29722164 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 229 283 30 20 chr6 159561492 159561591 -29717963 - Charlie7 DNA MER1_type -7 2605 2506 265 317 12 0 chr6 159564298 159564380 -29715174 - MIR3 SINE MIR -6 202 120 1693 118 15 33 chr6 159564413 159564684 -29714870 - AluJo SINE Alu -11 301 36 22 56 0 0 chr6 159565077 159565113 -29714441 + AT_rich Low_complexity Low_complexity 1 36 0 205 304 0 18 chr6 159565113 159565169 -29714385 - L2 LINE L2 -5 3267 3213 643 262 44 62 chr6 159565244 159565402 -29714152 + MIR SINE MIR 12 166 -96 450 53 0 0 chr6 159565402 159565459 -29714095 + (CA)n Simple_repeat Simple_repeat 2 58 0 643 262 44 62 chr6 159565459 159565525 -29714029 + MIR SINE MIR 166 232 -30 520 225 85 121 chr6 159566624 159566934 -29712620 - L1ME4a LINE L1 -224 5897 5604 2191 105 7 3 chr6 159566934 159567229 -29712325 - AluSc SINE Alu -13 296 1 520 225 85 121 chr6 159567229 159567341 -29712213 - L1ME4a LINE L1 -517 5604 5490 1550 157 269 76 chr6 159567715 159568239 -29711315 - MER51A LTR ERV1 -9 625 1 430 320 82 15 chr6 159568383 159568589 -29710965 + MARNA DNA Mariner 313 532 -54 209 359 77 0 chr6 159568704 159568782 -29710772 - MIR3 SINE MIR -1 207 124 861 186 56 48 chr6 159569165 159569396 -29710158 - L1MB7 LINE L1 0 6184 5952 238 309 119 42 chr6 159569622 159569790 -29709764 + MIR SINE MIR 3 183 -79 324 229 15 61 chr6 159570015 159570146 -29709408 + CT-rich Low_complexity Low_complexity 3 127 0 1738 139 68 0 chr6 159570638 159570918 -29708636 - L1MB5 LINE L1 -27 6147 5849 499 343 59 19 chr6 159570926 159571239 -29708315 + L2 LINE L2 1195 1587 -1727 1055 287 177 25 chr6 159571426 159572105 -29707449 + L2 LINE L2 2424 3234 -79 2071 86 0 0 chr6 159572105 159572361 -29707193 + AluSq SINE Alu 1 256 -57 1055 287 177 25 chr6 159572361 159572450 -29707104 + L2 LINE L2 3234 3308 -5 238 346 25 25 chr6 159572517 159572679 -29706875 - L1ME LINE L1 -504 5658 5497 1594 176 49 37 chr6 159572683 159572887 -29706667 - Charlie1b DNA MER1_type -2250 511 311 1762 166 0 27 chr6 159572887 159573213 -29706341 + AluJo SINE Alu 2 319 0 1594 176 49 37 chr6 159573213 159573416 -29706138 - Charlie1b DNA MER1_type -2450 311 98 327 244 164 51 chr6 159573629 159573903 -29705651 - L1ME LINE L1 -878 5268 4964 237 254 7 70 chr6 159574129 159574271 -29705283 - L1ME LINE L1 -1441 4705 4573 401 277 123 28 chr6 159574381 159574666 -29704888 + L1ME4a LINE L1 5573 5884 -237 21 57 0 0 chr6 159574890 159574925 -29704629 + AT_rich Low_complexity Low_complexity 1 35 0 507 267 22 15 chr6 159575788 159575923 -29703631 - MIR SINE MIR -14 248 113 346 313 74 13 chr6 159577055 159577210 -29702344 - MIR SINE MIR -76 132 4 318 26 0 0 chr6 159577506 159577545 -29702009 + (CA)n Simple_repeat Simple_repeat 2 40 0 259 103 0 0 chr6 159577854 159577893 -29701661 - L2 LINE L2 -4 3309 3271 2276 102 3 0 chr6 159579412 159579707 -29699847 - AluSq SINE Alu -17 296 1 2087 93 20 23 chr6 159580004 159580304 -29699250 + AluSg SINE Alu 1 299 -11 297 263 91 0 chr6 159581477 159581576 -29697978 - L1ME3A LINE L1 -58 6112 6005 1593 147 173 52 chr6 159581580 159581805 -29697749 - MSTA LTR MaLR 0 428 231 1528 171 8 0 chr6 159581805 159582063 -29697491 - AluSx SINE Alu -14 298 39 1593 147 173 52 chr6 159582063 159582219 -29697335 - MSTA LTR MaLR -197 231 1 23 0 0 0 chr6 159583892 159583915 -29695639 + AT_rich Low_complexity Low_complexity 1 23 0 1125 27 7 34 chr6 159584871 159585020 -29694534 + L1PA4 LINE L1 6011 6155 0 487 127 0 0 chr6 159585025 159585096 -29694458 - MER39 LTR ERV1 -370 337 267 * 820 123 56 92 chr6 159585079 159585274 -29694280 - MER21A LTR ERV1 -733 198 11 581 108 271 16 chr6 159586018 159586147 -29693407 - MER106B DNA MER1_type 0 1059 898 230 250 0 19 chr6 159586223 159586275 -29693279 - MIR SINE MIR -84 124 74 773 240 49 20 chr6 159586415 159586619 -29692935 - MIR SINE MIR -34 228 19 576 245 37 29 chr6 159587060 159587335 -29692219 + MER46C DNA MER2_type 2 321 -17 378 107 0 0 chr6 159587576 159587632 -29691922 + (TA)n Simple_repeat Simple_repeat 1 56 0 472 312 110 39 chr6 159587964 159588608 -29690946 - L2 LINE L2 -1415 1899 1210 321 341 171 0 chr6 159588763 159588892 -29690662 - MER91A DNA MER1_type -45 151 1 341 314 114 52 chr6 159588946 159589095 -29690459 - L2 LINE L2 -2786 528 390 1772 163 18 0 chr6 159589095 159589377 -29690177 + AluJb SINE Alu 9 295 -17 341 314 114 52 chr6 159589377 159589647 -29689907 - L2 LINE L2 -2924 390 83 272 329 25 0 chr6 159591040 159591119 -29688435 - MIR SINE MIR -117 145 65 27 62 0 0 chr6 159591400 159591448 -29688106 + AT_rich Low_complexity Low_complexity 1 48 0 223 319 36 87 chr6 159591817 159591955 -29687599 - L2 LINE L2 -5 3267 3137 1485 211 61 22 chr6 159591972 159592333 -29687221 + MLT1D LTR MaLR 129 503 -2 21 0 0 0 chr6 159593542 159593563 -29685991 + AT_rich Low_complexity Low_complexity 1 21 0 692 296 186 26 chr6 159593596 159594210 -29685344 - HAL1 LINE L1 -48 2459 1748 237 113 16 65 chr6 159594215 159594277 -29685277 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 410 303 48 0 chr6 159594410 159594575 -29684979 - HAL1 LINE L1 -677 1830 1658 6667 44 39 10 chr6 159594594 159595462 -29684092 - L1PA8 LINE L1 -1 6171 5279 927 106 7 50 chr6 159595492 159595633 -29683921 + AluSq/x SINE Alu 1 135 -177 2011 138 0 7 chr6 159595634 159595946 -29683608 + AluSx SINE Alu 2 311 0 2664 180 43 39 chr6 159596518 159596794 -29682760 - L1ME1 LINE L1 -231 5935 5662 2060 141 7 3 chr6 159596794 159597099 -29682455 - AluSx SINE Alu -2 310 5 2664 180 43 39 chr6 159597099 159597443 -29682111 - L1ME1 LINE L1 -504 5662 5312 409 180 67 47 chr6 159597452 159597602 -29681952 - HAL1b LINE L1 -5 1343 1191 210 118 0 0 chr6 159597602 159597636 -29681918 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 1528 157 114 7 chr6 159597706 159598012 -29681542 + MER44D DNA MER2_type 1 609 0 2240 180 31 13 chr6 159598026 159598504 -29681050 - L1MB7 LINE L1 -70 6114 5628 566 148 0 0 chr6 159600145 159600233 -29679321 + AluS SINE Alu 2 89 -224 3205 175 15 36 chr6 159600354 159600454 -29679100 - L1MB7 LINE L1 -30 6154 6053 2481 79 0 0 chr6 159600454 159600758 -29678796 - AluSg SINE Alu -6 304 1 3205 175 15 36 chr6 159600758 159601264 -29678290 - L1MB7 LINE L1 -131 6053 5562 2567 98 22 6 chr6 159601264 159601622 -29677932 + THE1B LTR MaLR 1 364 0 3205 175 15 36 chr6 159601622 159601701 -29677853 - L1MB7 LINE L1 -622 5562 5483 560 276 50 81 chr6 159602696 159603054 -29676500 - L2 LINE L2 -32 3281 2935 236 196 0 20 chr6 159604089 159604140 -29675414 - L2 LINE L2 0 3313 3264 720 208 0 21 chr6 159606485 159606629 -29672925 + MIR SINE MIR 84 224 -38 253 351 129 30 chr6 159606773 159606975 -29672579 + L2 LINE L2 2887 3108 -164 380 262 9 19 chr6 159607290 159607397 -29672157 + CT-rich Low_complexity Low_complexity 3 108 0 2072 119 19 13 chr6 159607619 159607929 -29671625 - AluSx SINE Alu 0 312 1 444 294 112 7 chr6 159608543 159608686 -29670868 + MIR3 SINE MIR 8 165 -43 329 322 75 80 chr6 159609539 159610191 -29669363 - L2 LINE L2 -384 2930 2282 1838 94 0 8 chr6 159612083 159612328 -29667226 - AluSc SINE Alu -14 295 53 237 216 0 0 chr6 159612364 159612415 -29667139 + Charlie8 DNA MER1_type 2367 2417 0 2555 150 52 31 chr6 159612894 159613239 -29666315 - L1MB4 LINE L1 -8 6172 5811 2340 89 0 3 chr6 159613239 159613541 -29666013 - AluSg SINE Alu -9 301 1 2555 150 52 31 chr6 159613541 159613714 -29665840 - L1MB4 LINE L1 -369 5811 5643 2476 63 0 10 chr6 159615345 159615646 -29663908 + AluY SINE Alu 1 298 -13 2378 96 61 6 chr6 159615754 159616099 -29663455 - THE1B LTR MaLR 0 364 1 186 43 0 0 chr6 159616629 159616652 -29662902 + (GA)n Simple_repeat Simple_repeat 2 24 0 311 98 16 0 chr6 159616652 159616713 -29662841 + (TG)n Simple_repeat Simple_repeat 2 63 0 23 0 0 0 chr6 159617723 159617746 -29661808 + AT_rich Low_complexity Low_complexity 1 23 0 2347 99 3 0 chr6 159618159 159618462 -29661092 - AluSp SINE Alu -9 304 1 22 0 0 0 chr6 159618580 159618602 -29660952 + AT_rich Low_complexity Low_complexity 1 22 0 2440 62 0 10 chr6 159618669 159618973 -29660581 - AluY SINE Alu -10 301 1 1574 196 55 4 chr6 159619992 159620462 -29659092 - L1MB8 LINE L1 0 6178 5647 1675 186 0 26 chr6 159620581 159620893 -29658661 - AluJb SINE Alu -8 304 1 2063 151 3 0 chr6 159620947 159621281 -29658273 - AluSx SINE Alu 0 335 1 21 0 0 0 chr6 159621298 159621319 -29658235 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr6 159621375 159621401 -29658153 + AT_rich Low_complexity Low_complexity 1 26 0 2966 57 8 8 chr6 159621612 159621996 -29657558 + L1PA7 LINE L1 5768 6151 -3 1635 179 3 3 chr6 159622404 159622712 -29656842 - AluJo SINE Alu 0 308 1 39 84 0 0 chr6 159622800 159622895 -29656659 + AT_rich Low_complexity Low_complexity 1 95 0 22 56 0 0 chr6 159623315 159623351 -29656203 + AT_rich Low_complexity Low_complexity 1 36 0 1283 160 46 30 chr6 159624346 159624583 -29654971 + AluJo SINE Alu 42 282 -30 191 61 30 0 chr6 159624586 159624619 -29654935 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 272 326 210 15 chr6 159624661 159625200 -29654354 + L2 LINE L2 1885 2528 -786 243 79 0 0 chr6 159625562 159625600 -29653954 + (GA)n Simple_repeat Simple_repeat 1 38 0 207 304 88 40 chr6 159625755 159625880 -29653674 + L3 LINE CR1 1422 1552 -25 24 0 0 0 chr6 159626240 159626264 -29653290 + AT_rich Low_complexity Low_complexity 1 24 0 3748 100 54 22 chr6 159626564 159627153 -29652401 - MER4B LTR ERV1 -2 608 1 2283 92 10 0 chr6 159629028 159629323 -29650231 + AluSq SINE Alu 1 298 -15 468 293 102 48 chr6 159630258 159630678 -29648876 + MER65A LTR ERV1 1 443 -2 22 0 0 0 chr6 159630795 159630817 -29648737 + AT_rich Low_complexity Low_complexity 1 22 0 464 212 40 0 chr6 159633214 159633313 -29646241 - MER65B LTR ERV1 -428 103 1 305 339 35 35 chr6 159633472 159633643 -29645911 - MIR SINE MIR -16 246 76 800 202 98 16 chr6 159634866 159635059 -29644495 - MER3 DNA MER1_type 0 209 1 24 0 0 0 chr6 159635269 159635293 -29644261 + AT_rich Low_complexity Low_complexity 1 24 0 2678 95 3 16 chr6 159635458 159635827 -29643727 - THE1B LTR MaLR 0 364 1 283 318 11 0 chr6 159635973 159636061 -29643493 - L2 LINE L2 0 3313 3225 2200 100 0 0 chr6 159636142 159636447 -29643107 + AluSg SINE Alu 1 305 0 32 26 0 0 chr6 159636477 159636516 -29643038 + AT_rich Low_complexity Low_complexity 1 39 0 257 125 0 0 chr6 159636602 159636642 -29642912 - MADE1 DNA Mariner 0 80 41 24 85 0 0 chr6 159636649 159636708 -29642846 + AT_rich Low_complexity Low_complexity 1 59 0 192 348 96 17 chr6 159636906 159637021 -29642533 - MIR SINE MIR -66 142 19 252 217 14 0 chr6 159637263 159637332 -29642222 - L1M4 LINE L1 -897 5249 5180 1410 52 0 0 chr6 159637333 159637506 -29642048 - L1PB1 LINE L1 0 6151 5979 345 167 0 0 chr6 159637834 159637894 -29641660 - THE1B LTR MaLR -213 151 92 2397 86 0 3 chr6 159638817 159639119 -29640435 + AluY SINE Alu 1 301 -10 556 274 109 17 chr6 159639126 159639356 -29640198 - L1MC/D LINE L1 -1989 5819 5569 902 195 0 6 chr6 159641934 159642093 -29637461 - AluJ SINE Alu -22 290 133 2528 69 3 0 chr6 159642482 159642787 -29636767 + AluSp SINE Alu 1 306 -7 22 0 0 0 chr6 159643381 159643403 -29636151 + AT_rich Low_complexity Low_complexity 1 22 0 201 94 0 0 chr6 159643409 159643441 -29636113 + (TGG)n Simple_repeat Simple_repeat 3 34 0 213 39 0 0 chr6 159647515 159647541 -29632013 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 238 313 193 60 chr6 159649431 159649680 -29629874 - L2 LINE L2 0 3272 2991 520 153 0 0 chr6 159649984 159650069 -29629485 - AluJ SINE Alu -180 132 48 29 60 0 0 chr6 159650233 159650283 -29629271 + AT_rich Low_complexity Low_complexity 1 50 0 32 26 0 0 chr6 159650372 159650411 -29629143 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr6 159651092 159651127 -29628427 + AT_rich Low_complexity Low_complexity 1 35 0 282 116 0 0 chr6 159651705 159651748 -29627806 + (TCC)n Simple_repeat Simple_repeat 3 45 0 1838 158 0 10 chr6 159651750 159652053 -29627501 - AluSx SINE Alu -12 300 1 2060 164 11 14 chr6 159653168 159653534 -29626020 - MLT1A1 LTR MaLR 0 365 1 14670 182 26 15 chr6 159654291 159654652 -29624902 - L1PB1 LINE L1 -7 6860 6505 306 0 0 0 chr6 159654652 159654686 -29624868 + (TG)n Simple_repeat Simple_repeat 2 35 0 14670 182 26 15 chr6 159654686 159659250 -29620304 - L1PB1 LINE L1 -362 6505 1862 1807 171 0 13 chr6 159659250 159659554 -29620000 - AluJb SINE Alu -12 300 1 14670 182 26 15 chr6 159659554 159660429 -29619125 - L1PB1 LINE L1 -5005 1862 998 1103 157 0 0 chr6 159660421 159660606 -29618948 - L1PB1 LINE L1 -6678 185 1 * 27 29 0 0 chr6 159660671 159660705 -29618849 + AT_rich Low_complexity Low_complexity 1 34 0 1458 60 11 0 chr6 159661223 159661406 -29618148 - L1PA7 LINE L1 0 6154 5970 23 68 0 0 chr6 159661450 159661494 -29618060 + AT_rich Low_complexity Low_complexity 1 44 0 6585 64 17 4 chr6 159661807 159662783 -29616771 - L1PA8 LINE L1 -13 6159 5165 971 128 0 0 chr6 159662783 159662931 -29616623 + L1P LINE L1 4570 4717 -1429 414 328 63 5 chr6 159663549 159663738 -29615816 - MIR SINE MIR -15 247 48 204 325 12 48 chr6 159664185 159664268 -29615286 + MIR SINE MIR 66 145 -63 22 0 0 0 chr6 159664764 159664786 -29614768 + AT_rich Low_complexity Low_complexity 1 22 0 245 333 7 80 chr6 159665350 159665488 -29614066 - L2 LINE L2 -179 3093 2966 192 354 39 0 chr6 159665686 159665813 -29613741 - L2 LINE L2 -587 2727 2596 309 303 105 49 chr6 159665842 159666394 -29613160 - L2 LINE L2 -979 2335 1753 24 0 0 0 chr6 159666510 159666534 -29613020 + AT_rich Low_complexity Low_complexity 1 24 0 5620 86 27 21 chr6 159666534 159667379 -29612175 - L1MA2 LINE L1 0 6304 5455 29 47 0 0 chr6 159667417 159667460 -29612094 + AT_rich Low_complexity Low_complexity 1 43 0 2260 101 7 0 chr6 159668744 159669042 -29610512 - AluSx SINE Alu -12 300 1 25 31 0 0 chr6 159669532 159669564 -29609990 + AT_rich Low_complexity Low_complexity 1 32 0 5474 146 18 27 chr6 159669572 159670948 -29608606 - L1PB3 LINE L1 -7 6204 4851 2921 200 101 4 chr6 159670948 159671775 -29607779 - L1PB3 LINE L1 -3357 2846 1947 1238 180 21 4 chr6 159671771 159672010 -29607544 - L1 LINE L1 -2298 3905 3663 * 863 185 43 9 chr6 159672006 159672217 -29607337 + L1 LINE L1 2240 2457 -3689 * 6226 155 38 28 chr6 159672219 159674143 -29605411 - L1PB3 LINE L1 -4256 1948 6 3888 279 54 34 chr6 159674112 159674787 -29604767 - L1PBa LINE L1 -5223 981 321 * 315 0 0 0 chr6 159674787 159674822 -29604732 + (TG)n Simple_repeat Simple_repeat 2 36 0 3888 279 54 34 chr6 159674822 159675750 -29603804 - L1PBa LINE L1 -5883 321 -653 1982 156 0 0 chr6 159675812 159676107 -29603447 - AluSx SINE Alu -17 295 1 34 0 0 0 chr6 159676531 159676565 -29602989 + AT_rich Low_complexity Low_complexity 1 34 0 12089 156 11 8 chr6 159676578 159679599 -29599955 - L1PA13 LINE L1 -3 6160 3136 208 280 20 0 chr6 159679888 159679938 -29599616 - MIR SINE MIR -30 232 182 2315 91 0 3 chr6 159680039 159680335 -29599219 - AluSg SINE Alu -15 295 1 945 194 5 34 chr6 159680958 159681164 -29598390 + MER3 DNA MER1_type 2 201 -8 2104 117 0 7 chr6 159683852 159684143 -29595411 + AluSg SINE Alu 3 291 -19 243 0 0 0 chr6 159684166 159684193 -29595361 + (T)n Simple_repeat Simple_repeat 1 27 0 460 143 25 17 chr6 159684519 159684638 -29594916 + (TA)n Simple_repeat Simple_repeat 2 121 0 233 29 29 0 chr6 159685245 159685279 -29594275 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 903 162 0 7 chr6 159685284 159685426 -29594128 - AluYa8 SINE Alu -37 273 133 1198 127 0 0 chr6 159685428 159685593 -29593961 - AluSg/x SINE Alu -14 296 132 2320 105 0 0 chr6 159685593 159685899 -29593655 - AluSx SINE Alu -6 306 1 2647 265 113 58 chr6 159687093 159688770 -29590784 - L2 LINE L2 -1 3312 1532 224 333 14 0 chr6 159688793 159688862 -29590692 - L2 LINE L2 -2 3311 3242 2296 101 0 0 chr6 159689373 159689669 -29589885 + AluSc SINE Alu 1 296 -13 334 316 85 34 chr6 159689912 159690039 -29589515 + MIR SINE MIR 12 152 -110 1722 197 61 3 chr6 159690039 159690384 -29589170 - MLT1A1 LTR MaLR 0 365 1 334 316 85 34 chr6 159690384 159690433 -29589121 + MIR SINE MIR 152 197 -65 21 0 0 0 chr6 159690476 159690497 -29589057 + AT_rich Low_complexity Low_complexity 1 21 0 33 56 0 0 chr6 159690562 159690616 -29588938 + AT_rich Low_complexity Low_complexity 1 54 0 182 310 46 23 chr6 159691015 159691102 -29588452 - MIR3 SINE MIR -6 202 114 21 36 0 0 chr6 159691791 159691819 -29587735 + AT_rich Low_complexity Low_complexity 1 28 0 470 121 162 0 chr6 159691847 159691946 -29587608 - MER106B DNA MER1_type -910 149 35 290 237 124 41 chr6 159692221 159692318 -29587236 + MER5B DNA MER1_type 1 105 -73 962 203 23 0 chr6 159692325 159692502 -29587052 - MER5A DNA MER1_type -8 181 1 194 244 22 0 chr6 159693217 159693262 -29586292 - L2 LINE L2 -82 3231 3186 1586 204 27 65 chr6 159693424 159693836 -29585718 - MSTD LTR MaLR 0 396 1 220 258 45 30 chr6 159695318 159695384 -29584170 + MIR SINE MIR 195 261 -1 1986 133 16 10 chr6 159695727 159696036 -29583518 + AluSx SINE Alu 1 311 -1 209 317 48 116 chr6 159697271 159697539 -29582015 - L2 LINE L2 -28 3244 2995 1134 179 45 5 chr6 159697727 159697950 -29581604 - MER46A DNA MER2_type -4 232 1 2235 114 0 25 chr6 159698015 159698330 -29581224 + AluSq SINE Alu 1 307 -6 2343 84 3 0 chr6 159698330 159698626 -29580928 + AluSp SINE Alu 1 297 -16 478 233 0 0 chr6 159748631 159748721 -29530833 + HERVH LTR ERV1 5055 5144 -2569 * 2528 105 36 42 chr6 159748719 159749321 -29530233 + HERVH LTR ERV1 5593 7713 0 2848 95 58 21 chr6 159749321 159749753 -29529801 + LTR7 LTR ERV1 1 448 -2 419 191 53 0 chr6 159749849 159749943 -29529611 - MER110A LTR ERV1 -301 167 69 615 291 192 10 chr6 159749976 159750417 -29529137 - L2 LINE L2 -240 3073 2552 246 147 279 0 chr6 159750427 159750495 -29529059 + L2 LINE L2 2451 2537 -777 192 280 28 103 chr6 159750485 159750543 -29529011 - L2 LINE L2 -847 2467 2419 * 1473 196 67 59 chr6 159750543 159750930 -29528624 + MLT1B LTR MaLR 1 390 0 192 280 28 103 chr6 159750930 159750978 -29528576 - L2 LINE L2 -895 2419 2369 1508 104 4 58 chr6 159751272 159751512 -29528042 + AluY SINE Alu 1 227 -84 374 78 0 0 chr6 159751578 159751657 -29527897 + AluY SINE Alu 233 311 0 399 232 39 87 chr6 159751663 159751821 -29527733 + MIR SINE MIR 30 180 -64 860 245 68 103 chr6 159752119 159752499 -29527055 - MER66A LTR ERV1 0 478 112 308 308 33 8 chr6 159752733 159752853 -29526701 - MER117 DNA MER1_type 0 197 75 252 230 24 0 chr6 159752908 159752968 -29526586 - MIR SINE MIR -60 148 91 2184 249 41 73 chr6 159755212 159755696 -29523858 + L1M4c LINE L1 808 1243 -5141 1700 154 18 82 chr6 159755696 159756026 -29523528 + AluJb SINE Alu 1 309 -3 2184 249 41 73 chr6 159756026 159756563 -29522991 + L1M4c LINE L1 1243 1796 -4588 264 219 0 105 chr6 159756570 159756684 -29522870 + L1MC4 LINE L1 6613 6714 -1328 232 297 0 0 chr6 159758254 159758318 -29521236 + L2 LINE L2 1967 2030 -1284 1062 124 12 6 chr6 159758321 159758482 -29521072 - THE1B LTR MaLR 0 364 203 1429 88 5 10 chr6 159758616 159758810 -29520744 - THE1B LTR MaLR -171 193 1 2134 131 7 0 chr6 159759678 159759975 -29519579 - AluSx SINE Alu -13 299 1 346 283 53 18 chr6 159760058 159760171 -29519383 + L2 LINE L2 3197 3313 0 180 246 88 35 chr6 159760571 159760628 -29518926 - MIR SINE MIR -114 148 89 338 247 118 0 chr6 159760882 159760975 -29518579 + MIR SINE MIR 33 136 -126 23 33 0 0 chr6 159763559 159763589 -29515965 + AT_rich Low_complexity Low_complexity 1 30 0 1087 291 66 3 chr6 159763646 159763966 -29515588 + L2 LINE L2 2544 2883 -431 1706 150 34 45 chr6 159763968 159764321 -29515233 + L1MC2 LINE L1 5996 6344 0 2452 133 30 25 chr6 159765573 159765935 -29513619 + THE1B LTR MaLR 1 364 0 298 317 62 21 chr6 159765939 159766084 -29513470 + L2 LINE L2 2687 2837 -477 449 354 33 63 chr6 159766156 159766489 -29513065 + L2 LINE L2 2950 3272 0 1472 185 52 60 chr6 159767142 159767509 -29512045 + MLT1A1 LTR MaLR 1 364 -1 1188 263 18 34 chr6 159768247 159768628 -29510926 + L2 LINE L2 2930 3304 -9 1014 133 123 13 chr6 159769317 159769517 -29510037 + MSTA LTR MaLR 151 428 0 581 305 31 18 chr6 159769883 159770109 -29509445 - MIR SINE MIR -13 249 21 189 366 89 8 chr6 159770450 159770573 -29508981 + L2 LINE L2 3136 3268 -4 5709 78 4 1 chr6 159771096 159771785 -29507769 - LTR8 LTR ERV1 0 691 1 919 168 97 41 chr6 159772347 159772433 -29507121 + MER2 DNA MER2_type 4 84 -261 6044 115 26 20 chr6 159772433 159773328 -29506226 + MER4D LTR ERV1 3 902 -1 919 168 97 41 chr6 159773328 159773437 -29506117 + MER2 DNA MER2_type 84 210 -135 581 126 0 10 chr6 159773463 159773566 -29505988 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 280 229 16 0 chr6 159773584 159773645 -29505909 + MER2 DNA MER2_type 284 345 0 3033 173 12 8 chr6 159774481 159774991 -29504563 - MLT2B1 LTR ERVL -8 512 1 21 36 0 0 chr6 159775073 159775101 -29504453 + AT_rich Low_complexity Low_complexity 1 28 0 1666 173 10 46 chr6 159775174 159775480 -29504074 + AluJo SINE Alu 1 295 -17 252 313 152 0 chr6 159776039 159776151 -29503403 + MER5A DNA MER1_type 12 140 -49 768 228 94 53 chr6 159776156 159776584 -29502970 - MER110A LTR ERV1 -6 485 1 558 268 45 22 chr6 159776656 159776835 -29502719 - MER110A-int LTR ERV1 -6 4641 4459 1914 248 94 55 chr6 159776863 159777586 -29501968 - MER110A-int LTR ERV1 -466 4181 3431 2248 152 22 14 chr6 159777592 159777953 -29501601 + THE1B LTR MaLR 1 364 0 3927 107 0 0 chr6 159777958 159778491 -29501063 + HERVL LTR ERVL 5 537 -5117 1785 166 78 27 chr6 159778491 159779010 -29500544 + MLT2A2 LTR ERVL 14 554 0 823 256 73 44 chr6 159779010 159779393 -29500161 - MER110A-int LTR ERV1 -1218 3429 3036 981 264 38 35 chr6 159779464 159779779 -29499775 - MER110A-int LTR ERV1 -1742 2905 2590 1314 299 69 23 chr6 159779804 159780329 -29499225 - MER110A-int LTR ERV1 -2282 2365 1817 694 322 55 64 chr6 159780443 159781269 -29498285 - MER110A-int LTR ERV1 -2901 3900 1383 1960 128 89 45 chr6 159781380 159781738 -29497816 + THE1C LTR MaLR 2 375 0 9920 137 12 31 chr6 159781747 159783348 -29496206 + THE1C-int LTR MaLR 10 1580 0 1749 161 64 44 chr6 159783355 159783716 -29495838 + THE1C LTR MaLR 8 375 0 2267 211 72 75 chr6 159784034 159784730 -29494824 + LTR8A LTR ERV1 34 727 0 460 281 35 35 chr6 159784841 159785012 -29494542 - MER110A-int LTR ERV1 -4211 436 266 504 219 0 0 chr6 159785032 159785155 -29494399 + (TG)n Simple_repeat Simple_repeat 2 124 0 349 315 69 0 chr6 159785366 159785496 -29494058 + LTR8A-int LTR ERV1 81 219 -4428 186 103 0 0 chr6 159785520 159785549 -29494005 + (CA)n Simple_repeat Simple_repeat 1 29 0 424 385 20 4 chr6 159785571 159785823 -29493731 - MER89-int LTR ERV1 -4591 2210 1955 273 394 0 0 chr6 159785982 159786114 -29493440 - MER89-int LTR ERV1 -4993 1808 1677 5259 145 77 6 chr6 159786126 159786968 -29492586 - MER4D LTR ERV1 0 903 2 2712 189 26 19 chr6 159787001 159787514 -29492040 - MER34C LTR ERV1 0 585 66 2552 134 3 0 chr6 159787514 159787879 -29491675 - MER47A DNA MER2_type 0 366 1 2712 189 26 19 chr6 159787879 159787942 -29491612 - MER34C LTR ERV1 -519 66 5 250 267 0 0 chr6 159788399 159788459 -29491095 + MER34C LTR ERV1 37 96 -489 2913 78 98 5 chr6 159788463 159788873 -29490681 - LTR7 LTR ERV1 -2 448 1 2027 143 0 7 chr6 159788899 159789192 -29490362 + AluSx SINE Alu 9 299 -13 1697 181 91 56 chr6 159789233 159789696 -29489858 + LTR29 LTR ERV1 144 622 0 1389 170 0 0 chr6 159790229 159790441 -29489113 + AluJb SINE Alu 3 214 -98 1041 148 48 0 chr6 159790445 159790634 -29488920 - MER2 DNA MER2_type -144 201 4 3840 136 62 32 chr6 159790755 159791266 -29488288 - MER41B LTR ERV1 0 635 140 1813 164 0 11 chr6 159791266 159791547 -29488007 + AluSx SINE Alu 1 278 -34 270 0 0 0 chr6 159791551 159791581 -29487973 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 3840 136 62 32 chr6 159791581 159791681 -29487873 - MER41B LTR ERV1 -497 138 1 2105 173 57 163 chr6 159791961 159792775 -29486779 + LTR8A LTR ERV1 1 727 0 1181 110 35 6 chr6 159793111 159793284 -29486270 - L1PA10 LINE L1 0 6168 5991 218 61 0 61 chr6 159793284 159793317 -29486237 - MER5A DNA MER1_type -112 77 47 1107 228 27 86 chr6 159793477 159793885 -29485669 - MER110A LTR ERV1 -70 398 15 717 218 103 0 chr6 159794448 159794613 -29484941 + MER5A DNA MER1_type 4 185 -4 381 119 119 10 chr6 159794823 159794924 -29484630 - LTR37A LTR ERV1 -5 421 310 1843 171 82 20 chr6 159795152 159795590 -29483964 - L1MB4 LINE L1 -3 6177 5713 717 85 0 0 chr6 159796056 159796162 -29483392 + (TC)n Simple_repeat Simple_repeat 1 106 0 243 0 0 0 chr6 159796161 159796188 -29483366 + (CA)n Simple_repeat Simple_repeat 1 27 0 * 414 294 142 15 chr6 159796878 159797082 -29482472 - MIR SINE MIR -14 248 19 1125 239 85 41 chr6 159797876 159798240 -29481314 + MLT1B LTR MaLR 1 380 -10 2340 115 0 0 chr6 159799652 159799964 -29479590 + AluSq SINE Alu 1 312 -1 838 147 0 8 chr6 159801934 159802063 -29477491 - FLAM_C SINE Alu -3 130 3 1662 195 12 63 chr6 159802489 159802900 -29476654 + MLT1B LTR MaLR 1 390 0 218 288 15 0 chr6 159805567 159805633 -29473921 + MIR SINE MIR 195 261 -1 255 262 75 9 chr6 159806467 159806574 -29472980 + HAL1 LINE L1 20 133 -2374 1868 160 13 41 chr6 159806620 159806889 -29472665 - MLT2C1 LTR ERVL -9 388 132 2237 101 20 0 chr6 159806889 159807195 -29472359 + AluSx SINE Alu 1 312 0 1868 160 13 41 chr6 159807195 159807319 -29472235 - MLT2C1 LTR ERVL -265 132 6 594 308 79 29 chr6 159807505 159807866 -29471688 + MLT1E LTR MaLR 1 485 -169 2657 218 44 56 chr6 159807914 159808529 -29471025 + L1ME LINE L1 4245 4843 -1303 2075 131 14 0 chr6 159808529 159808819 -29470735 - AluSq SINE Alu -19 294 1 2657 218 44 56 chr6 159808819 159809253 -29470301 + L1ME LINE L1 4843 5281 -865 2081 138 7 0 chr6 159809300 159809598 -29469956 + AluSx SINE Alu 1 300 -12 770 251 23 5 chr6 159809626 159809845 -29469709 + L1ME LINE L1 5293 5515 -651 2359 70 3 26 chr6 159810060 159810373 -29469181 - AluY SINE Alu -5 306 1 483 303 34 34 chr6 159810453 159810687 -29468867 + MLT1K LTR MaLR 340 573 -15 251 194 45 45 chr6 159811107 159811174 -29468380 + MIR SINE MIR 79 145 -63 1014 198 14 19 chr6 159811345 159811557 -29467997 - MER20 DNA MER1_type -3 216 6 263 265 38 0 chr6 159812910 159813009 -29466545 - HAL1b LINE L1 -3 6118 1254 207 269 87 10 chr6 159814089 159814193 -29465361 + L2 LINE L2 3161 3272 0 256 426 14 7 chr6 159814864 159815012 -29464542 - L3 LINE CR1 -1307 270 122 1768 158 8 73 chr6 159815543 159815942 -29463612 - MLT1B LTR MaLR 0 390 18 987 161 312 3 chr6 159815933 159816218 -29463336 - LOR1a LTR ERV1 -122 375 3 * 383 247 39 7 chr6 159816330 159816449 -29463105 - MIR SINE MIR -68 140 15 3060 240 68 41 chr6 159817289 159818399 -29461155 - L1ME1 LINE L1 -4 6231 5036 2423 98 0 0 chr6 159818399 159818706 -29460848 - AluSx SINE Alu -5 307 1 3060 240 68 41 chr6 159818706 159819690 -29459864 - L1ME1 LINE L1 -1199 5036 4081 186 71 0 0 chr6 159819695 159819723 -29459831 + (CA)n Simple_repeat Simple_repeat 1 28 0 3388 155 57 33 chr6 159819846 159820648 -29458906 - L1MB5 LINE L1 -1 6881 6108 899 216 50 5 chr6 159820649 159821261 -29458293 - L1MB5 LINE L1 -1527 5321 4496 565 280 118 22 chr6 159821260 159821767 -29457787 - L1ME1 LINE L1 -4755 1641 1086 * 446 349 41 4 chr6 159821756 159822025 -29457529 - L1ME1 LINE L1 -6090 306 28 * 402 283 152 22 chr6 159822542 159822772 -29456782 - MIR SINE MIR -1 261 2 21 0 0 0 chr6 159823221 159823242 -29456312 + AT_rich Low_complexity Low_complexity 1 21 0 216 331 92 14 chr6 159823832 159823974 -29455580 + L2 LINE L2 3160 3312 -1 26 64 0 0 chr6 159824070 159824117 -29455437 + AT_rich Low_complexity Low_complexity 1 47 0 316 309 129 22 chr6 159824284 159824462 -29455092 - L1MB5 LINE L1 -4271 2578 2382 439 256 55 64 chr6 159824588 159824932 -29454622 - L1MEd LINE L1 -4886 1233 893 1250 320 64 22 chr6 159824941 159825609 -29453945 - L1MEd LINE L1 -5307 812 117 255 193 34 57 chr6 159825612 159825700 -29453854 - L1MEd LINE L1 -6027 92 7 361 252 84 0 chr6 159825701 159825820 -29453734 - L1M4 LINE L1 -1896 4250 4122 338 234 89 8 chr6 159826149 159826273 -29453281 - L1MC4 LINE L1 0 8042 7909 186 43 0 0 chr6 159826274 159826297 -29453257 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 522 0 0 0 chr6 159826296 159826354 -29453200 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 933 187 0 0 chr6 159826355 159826505 -29453049 - AluJb SINE Alu -27 285 136 238 257 150 0 chr6 159826510 159826623 -29452931 - L1MC4 LINE L1 -145 7897 7768 1021 304 68 9 chr6 159826824 159827248 -29452306 - L2 LINE L2 -1390 1924 1476 839 225 81 0 chr6 159827287 159827496 -29452058 - MER58B DNA MER1_type 0 341 116 218 330 10 31 chr6 159827528 159827625 -29451929 - L2 LINE L2 -1883 1431 1337 1904 167 0 37 chr6 159827678 159828002 -29451552 + AluJb SINE Alu 1 312 0 1349 154 48 143 chr6 159828018 159828176 -29451378 - MER31B LTR ERV1 -45 421 250 2362 99 0 16 chr6 159828176 159828489 -29451065 + AluSg SINE Alu 1 308 -2 1349 154 48 143 chr6 159828489 159828764 -29450790 - MER31B LTR ERV1 -216 250 29 2227 117 0 16 chr6 159830738 159831054 -29448500 - AluSx SINE Alu -1 311 1 549 56 0 101 chr6 159831887 159831976 -29447578 - MADE1 DNA Mariner 0 80 1 874 89 47 0 chr6 159832358 159832527 -29447027 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 1085 46 40 0 chr6 159832552 159832725 -29446829 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1023 192 132 49 chr6 159832725 159833029 -29446525 - MLT2B1 LTR ERVL -45 458 137 4880 123 39 28 chr6 159833031 159833928 -29445626 - Tigger3b DNA MER2_type -1 1230 324 864 133 0 0 chr6 159833935 159834063 -29445491 - Tigger3b DNA MER2_type -1090 141 14 539 177 39 0 chr6 159834069 159834199 -29445355 - MLT2B1 LTR ERVL -385 135 1 1029 210 88 80 chr6 159836156 159836579 -29442975 + MER63C DNA MER1_type 1 426 -504 853 363 126 10 chr6 159836769 159837494 -29442060 - L2 LINE L2 -1976 1338 530 513 285 136 58 chr6 159838237 159839019 -29440535 + L1M4 LINE L1 3373 4215 -1931 2031 137 3 7 chr6 159839638 159839930 -29439624 + AluSx SINE Alu 1 291 -21 1809 147 78 32 chr6 159840583 159840931 -29438623 + THE1B LTR MaLR 1 364 0 191 352 0 0 chr6 159841147 159841201 -29438353 - MIR SINE MIR -151 111 58 350 325 79 50 chr6 159841366 159841646 -29437908 + L1MC4a LINE L1 5760 6047 -1761 10289 198 14 17 chr6 159841915 159844340 -29435214 + L1 LINE L1 2394 4811 -1335 1181 137 24 9 chr6 159844371 159844582 -29434972 + L1PB3 LINE L1 5786 5999 -155 2216 142 3 0 chr6 159844783 159845129 -29434425 + MER1A DNA MER1_type 1 347 -182 1216 97 6 0 chr6 159845282 159845458 -29434096 + MER1A DNA MER1_type 353 529 0 298 241 36 67 chr6 159845630 159845825 -29433729 + LTR37B LTR ERV1 187 375 -93 226 195 0 0 chr6 159845827 159845868 -29433686 - LTR40b LTR ERVL -1 461 421 271 222 56 0 chr6 159846425 159846497 -29433057 + LTR37A LTR ERV1 323 398 -28 231 220 20 0 chr6 159846538 159846588 -29432966 + L2 LINE L2 3263 3313 0 318 186 12 81 chr6 159846918 159847004 -29432550 - MLT1K LTR MaLR 0 588 509 1005 221 0 5 chr6 159847723 159847931 -29431623 + MER3 DNA MER1_type 3 209 0 1220 232 196 2 chr6 159847940 159848354 -29431200 + MER89 LTR ERV1 1 494 -65 21 0 0 0 chr6 159848507 159848528 -29431026 + AT_rich Low_complexity Low_complexity 1 21 0 779 184 27 5 chr6 159848628 159848813 -29430741 + MER53 DNA DNA 1 189 0 540 281 24 48 chr6 159849314 159849524 -29430030 - L2 LINE L2 -17 3296 3092 491 254 39 12 chr6 159849548 159849737 -29429817 - MER110A LTR ERV1 0 468 265 2645 95 58 21 chr6 159849763 159850195 -29429359 + LTR7 LTR ERV1 1 448 -2 14836 132 24 13 chr6 159850197 159853332 -29426222 + HERVH LTR ERV1 1 2987 -4726 698 142 40 34 chr6 159853326 159853474 -29426080 + HERVH LTR ERV1 3140 3288 -4425 * 3234 105 4 6 chr6 159853466 159853969 -29425585 + HERVH LTR ERV1 3492 3993 -3720 2490 118 3 5 chr6 159853971 159854351 -29425203 + HERVH LTR ERV1 4488 4866 -2847 3032 141 53 12 chr6 159854679 159855241 -29424313 - L1MA9 LINE L1 -174 6138 5554 212 356 35 30 chr6 159855604 159855806 -29423748 - L2 LINE L2 -2349 965 763 1258 218 50 47 chr6 159855954 159856433 -29423121 - MER39 LTR ERV1 0 707 6 209 180 0 40 chr6 159858269 159858319 -29421235 + T-rich Low_complexity Low_complexity 3 50 0 227 269 26 13 chr6 159859154 159859232 -29420322 - MARNA DNA Mariner -471 115 37 2089 113 10 3 chr6 159859273 159859619 -29419935 - AluSq SINE Alu 0 313 1 1332 194 19 8 chr6 159860202 159860470 -29419084 + MLT1A1 LTR MaLR 1 271 -94 674 225 116 41 chr6 159861020 159861340 -29418214 + L1MC5 LINE L1 6784 7127 -834 1648 164 53 70 chr6 159861340 159861894 -29417660 - MLT2A2 LTR ERVL 0 554 1 563 238 110 68 chr6 159861894 159862277 -29417277 + L1MC5 LINE L1 7123 7521 -440 303 216 62 52 chr6 159862555 159862652 -29416902 + L1ME4a LINE L1 5987 6084 -37 925 137 0 20 chr6 159862746 159862892 -29416662 - FLAM_C SINE Alu 0 143 1 201 182 0 0 chr6 159863512 159863545 -29416009 + T-rich Low_complexity Low_complexity 1 33 0 1063 197 76 0 chr6 159864137 159864401 -29415153 + L1MB7 LINE L1 5844 6127 -57 2226 115 7 0 chr6 159865425 159865720 -29413834 + AluSx SINE Alu 1 297 -15 220 200 22 0 chr6 159865857 159865902 -29413652 + CT-rich Low_complexity Low_complexity 3 48 0 24 0 0 0 chr6 159867121 159867145 -29412409 + AT_rich Low_complexity Low_complexity 1 24 0 366 338 14 7 chr6 159869831 159869976 -29409578 - L2 LINE L2 -461 2853 2708 194 191 21 0 chr6 159870102 159870149 -29409405 + (TA)n Simple_repeat Simple_repeat 1 48 0 350 233 8 63 chr6 159870153 159870285 -29409269 - L1MC4 LINE L1 -1337 6705 6611 315 232 11 63 chr6 159870206 159870301 -29409253 + L1MC4 LINE L1 6614 6703 -1339 * 749 104 0 64 chr6 159870310 159870435 -29409119 - AluJ SINE Alu -7 305 189 1125 168 5 5 chr6 159870593 159870778 -29408776 - AluJ SINE Alu -127 185 1 351 212 0 0 chr6 159870801 159870867 -29408687 - AluJ/FLAM SINE Alu -236 66 1 1760 34 0 0 chr6 159871813 159872059 -29407495 + L1PA4 LINE L1 5939 6184 0 280 360 142 9 chr6 159874029 159874423 -29405131 - L2 LINE L2 -202 3070 2621 1383 185 113 42 chr6 159876241 159876464 -29403090 - MER63B DNA MER1_type -627 435 229 1373 117 0 106 chr6 159876464 159876720 -29402834 - MER30 DNA MER1_type -1 229 1 1383 185 113 42 chr6 159876720 159876902 -29402652 - MER63B DNA MER1_type -833 229 1 1482 181 61 41 chr6 159877016 159877358 -29402196 + MLT1D LTR MaLR 1 349 -156 228 306 16 0 chr6 159877381 159877443 -29402111 - MIR SINE MIR -63 145 83 2281 95 0 0 chr6 159878667 159878989 -29400565 - AluSx SINE Alu 0 322 1 225 293 43 50 chr6 159879182 159879322 -29400232 - HAL1b LINE L1 -879 469 331 217 254 0 0 chr6 159880139 159880194 -29399360 + (TA)n Simple_repeat Simple_repeat 2 56 0 312 197 112 117 chr6 159882919 159883142 -29396412 + MER112 DNA MER1_type 37 258 -2 826 252 34 26 chr6 159884421 159884655 -29394899 - MIR SINE MIR -14 248 13 315 210 0 0 chr6 159885810 159885872 -29393682 + AluSg/x SINE Alu 121 182 -120 1466 75 21 0 chr6 159885872 159886058 -29393496 + AluSc SINE Alu 96 285 -24 31 44 0 0 chr6 159886058 159886103 -29393451 + AT_rich Low_complexity Low_complexity 1 45 0 222 208 0 0 chr6 159887675 159887728 -29391826 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr6 159887741 159887762 -29391792 + AT_rich Low_complexity Low_complexity 1 21 0 2296 112 0 0 chr6 159887916 159888221 -29391333 + AluSg SINE Alu 1 305 -5 1881 155 13 29 chr6 159888386 159888696 -29390858 + AluSx SINE Alu 3 307 -5 30 59 0 0 chr6 159889369 159889420 -29390134 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr6 159889535 159889563 -29389991 + AT_rich Low_complexity Low_complexity 1 28 0 2094 146 0 0 chr6 159890348 159890656 -29388898 - AluSx SINE Alu -4 308 1 191 146 49 0 chr6 159892353 159892394 -29387160 - MIR SINE MIR -102 160 118 407 221 190 0 chr6 159893379 159893473 -29386081 - MER4A LTR ERV1 0 465 390 255 21 85 0 chr6 159893473 159893520 -29386034 + T-rich Low_complexity Low_complexity 2 52 0 407 221 190 0 chr6 159893520 159893583 -29385971 - MER4A LTR ERV1 -75 390 278 * 1200 176 40 72 chr6 159893566 159893967 -29385587 - MER4A LTR ERV1 -229 349 1 3438 271 99 19 chr6 159894137 159895464 -29384090 - L2 LINE L2 -1849 1465 33 1969 182 37 3 chr6 159899813 159900192 -29379362 + MSTD LTR MaLR 1 392 -4 799 15 82 0 chr6 159900292 159900426 -29379128 + (TAGA)n Simple_repeat Simple_repeat 2 146 0 537 264 102 82 chr6 159900756 159901109 -29378445 - MLT1H LTR MaLR -54 495 136 979 178 19 9 chr6 159901272 159901535 -29378019 + MER63 DNA MER1_type 642 937 -124 614 250 14 0 chr6 159901575 159901719 -29377835 + MER63 DNA MER1_type 915 1060 0 294 307 37 37 chr6 159902367 159902530 -29377024 - MIR SINE MIR -44 218 56 1142 202 121 46 chr6 159902785 159903131 -29376423 + MLT1A2 LTR MaLR 3 374 0 22 35 0 0 chr6 159903611 159903640 -29375914 + AT_rich Low_complexity Low_complexity 1 29 0 1251 279 64 27 chr6 159903774 159904333 -29375221 + MLT1G LTR MaLR 11 590 0 1018 146 0 0 chr6 159905042 159905186 -29374368 + AluSq/x SINE Alu 1 144 -168 442 116 43 0 chr6 159905186 159905297 -29374257 + AluSc SINE Alu 207 320 0 397 268 47 24 chr6 159905989 159906116 -29373438 - MER94 DNA DNA -3 131 2 496 229 9 0 chr6 159906602 159906711 -29372843 - MER94 DNA DNA -24 110 1 785 273 98 42 chr6 159908081 159908487 -29371067 + MLT1J2 LTR MaLR 2 430 -20 207 0 0 0 chr6 159908621 159908644 -29370910 + (A)n Simple_repeat Simple_repeat 1 23 0 358 350 7 15 chr6 159908756 159908893 -29370661 + L2 LINE L2 3177 3312 -1 370 264 44 0 chr6 159909370 159909461 -29370093 + L2 LINE L2 3211 3305 -8 330 296 193 0 chr6 159909562 159909697 -29369857 - MIR SINE MIR -18 244 84 2227 117 0 3 chr6 159910928 159911226 -29368328 + AluSx SINE Alu 1 297 -15 1026 93 0 0 chr6 159911558 159911709 -29367845 - L1PA13 LINE L1 -310 5853 5703 * 1224 140 72 30 chr6 159911706 159911971 -29367583 + L1P4 LINE L1 5075 5350 -796 34363 98 10 11 chr6 159911984 159918132 -29361422 - L1PA6 LINE L1 -11 6143 10 2591 73 3 0 chr6 159918131 159918488 -29361066 + L1P4 LINE L1 5340 5697 -471 * 2096 267 81 63 chr6 159918491 159919656 -29359898 + MER69 DNA AcHobo 203 1387 -1139 3347 178 27 6 chr6 159920207 159920910 -29358644 - L1MA7 LINE L1 0 6495 5778 544 162 0 0 chr6 159920910 159921009 -29358545 + L1M2 LINE L1 5501 5599 -713 * 12526 202 22 14 chr6 159921005 159921889 -29357665 - L1MA7 LINE L1 -798 5552 4676 2557 116 0 21 chr6 159921889 159922261 -29357293 - THE1B LTR MaLR 0 364 1 12526 202 22 14 chr6 159922261 159924485 -29355069 - L1MA7 LINE L1 -1674 4676 2422 1440 306 14 55 chr6 159924653 159925345 -29354209 - L1MA7 LINE L1 -5001 1280 617 361 326 8 0 chr6 159925318 159925450 -29354104 - L1MA7 LINE L1 -5520 761 629 * 2335 290 10 25 chr6 159925435 159926207 -29353347 - L1MA7 LINE L1 -5520 761 1 2351 217 55 27 chr6 159926596 159927348 -29352206 + MER69 DNA AcHobo 1754 2526 0 331 264 92 37 chr6 159928050 159928213 -29351341 + L2 LINE L2 2866 3037 -235 197 363 75 0 chr6 159928361 159928441 -29351113 + L2 LINE L2 3186 3271 -1 362 287 110 68 chr6 159928939 159929401 -29350153 - L2 LINE L2 -5 3267 2792 1592 158 166 57 chr6 159930155 159930399 -29349155 - MSTA LTR MaLR 0 428 125 2358 104 3 0 chr6 159930399 159930708 -29348846 - AluSg SINE Alu 0 310 1 1592 158 166 57 chr6 159930708 159930849 -29348705 - MSTA LTR MaLR -303 125 1 291 254 68 25 chr6 159930850 159930968 -29348586 - L2 LINE L2 -11 3302 3180 315 323 32 8 chr6 159931202 159931326 -29348228 + MIR SINE MIR 110 236 -26 683 183 7 13 chr6 159933039 159933192 -29346362 + L1MA4 LINE L1 6148 6299 -1 1780 112 3 93 chr6 159933273 159933585 -29345969 + AluSq SINE Alu 1 284 -29 264 30 0 0 chr6 159933590 159933623 -29345931 + (CAA)n Simple_repeat Simple_repeat 2 34 0 757 140 0 0 chr6 159935211 159935318 -29344236 - AluSp/q SINE Alu -17 296 190 208 172 86 86 chr6 159935387 159935480 -29344074 - MER5C DNA MER1_type -11 313 221 567 183 7 7 chr6 159935517 159935654 -29343900 - L1MA7 LINE L1 0 6291 6155 609 138 50 50 chr6 159935690 159935849 -29343705 - L1MA7 LINE L1 -114 6177 6019 305 329 24 0 chr6 159935849 159935934 -29343620 - MER5C DNA MER1_type -237 87 1 243 312 21 0 chr6 159936080 159936173 -29343381 + MIR SINE MIR 65 159 -103 904 231 16 98 chr6 159936178 159936554 -29343000 - LTR41 LTR ERVL -6 767 423 241 197 40 13 chr6 159936852 159936928 -29342626 - MLT1K LTR MaLR -2 586 509 261 119 0 0 chr6 159938192 159938234 -29341320 + (CA)n Simple_repeat Simple_repeat 2 43 0 683 205 51 80 chr6 159938710 159938746 -29340808 + MLT1D LTR MaLR 2 38 -429 2299 114 0 3 chr6 159938746 159939054 -29340500 + AluSx SINE Alu 1 307 -5 683 205 51 80 chr6 159939054 159939333 -29340221 + MLT1D LTR MaLR 38 308 -159 569 278 130 17 chr6 159940412 159940711 -29338843 + MLT1J2 LTR MaLR 94 426 -24 260 228 33 22 chr6 159940765 159940857 -29338697 + (CA)n Simple_repeat Simple_repeat 1 93 0 1910 158 65 6 chr6 159941123 159941477 -29338077 - THE1C LTR MaLR 0 375 1 2331 84 7 0 chr6 159941664 159941960 -29337594 + AluSc SINE Alu 1 298 -11 192 314 47 0 chr6 159942824 159942910 -29336644 + L2 LINE L2 2034 2123 -1191 297 285 158 24 chr6 159943037 159943202 -29336352 - L2 LINE L2 -954 2360 2174 827 308 42 32 chr6 159943204 159943607 -29335947 - MLT1I LTR MaLR 0 409 3 2513 202 19 33 chr6 159943696 159944216 -29335338 + MLT2B2 LTR ERVL 3 515 0 336 317 188 62 chr6 159944658 159944926 -29334628 + L2 LINE L2 1965 2198 -1116 2230 117 3 3 chr6 159944926 159945225 -29334329 - AluSq SINE Alu -14 299 1 336 317 188 62 chr6 159945225 159945750 -29333804 + L2 LINE L2 2198 2858 -456 1681 168 72 14 chr6 159945824 159946169 -29333385 + MLT1A1 LTR MaLR 1 365 0 200 59 29 0 chr6 159946230 159946264 -29333290 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 327 221 15 0 chr6 159946490 159946558 -29332996 + L2 LINE L2 3243 3311 -2 279 281 0 31 chr6 159946956 159947052 -29332502 + GA-rich Low_complexity Low_complexity 3 95 0 22 35 0 0 chr6 159947112 159947141 -29332413 + AT_rich Low_complexity Low_complexity 1 29 0 838 169 28 28 chr6 159947811 159947989 -29331565 + L1MB8 LINE L1 6001 6178 0 1119 265 121 14 chr6 159948449 159948766 -29330788 + LTR33A LTR ERVL 60 418 -105 855 193 69 144 chr6 159948766 159949170 -29330384 + MLT1A2 LTR MaLR 1 374 0 1119 265 121 14 chr6 159949170 159949289 -29330265 + LTR33A LTR ERVL 418 523 0 2088 92 3 44 chr6 159949563 159949697 -29329857 + AluSx SINE Alu 3 141 -176 2554 65 0 7 chr6 159949697 159950005 -29329549 + AluY SINE Alu 1 306 -5 2088 92 3 44 chr6 159950005 159950197 -29329357 + AluSx SINE Alu 141 317 0 203 301 199 22 chr6 159951264 159951400 -29328154 - L2 LINE L2 -920 2394 2235 187 209 47 0 chr6 159952713 159952756 -29326798 - L2 LINE L2 -1 3312 3268 719 357 108 20 chr6 159952869 159953547 -29326007 - L2 LINE L2 -258 3055 2316 233 323 94 0 chr6 159953914 159954010 -29325544 + L2 LINE L2 3116 3220 -52 433 211 118 12 chr6 159954339 159954500 -29325054 - L1ME4a LINE L1 0 6121 5944 256 232 20 0 chr6 159955190 159955289 -29324265 + (CATA)n Simple_repeat Simple_repeat 2 102 0 2145 179 87 2 chr6 159955370 159955795 -29323759 - LOR1b LTR ERV1 0 461 1 2074 196 28 32 chr6 159956753 159957284 -29322270 + MER34 LTR ERV1 11 539 -3 1349 149 73 7 chr6 159957479 159957767 -29321787 - L1MA8 LINE L1 -2 6289 5983 2084 121 6 16 chr6 159957982 159958324 -29321230 - AluSx SINE Alu 0 312 1 234 338 146 71 chr6 159958369 159958849 -29320705 + L2 LINE L2 2343 2858 -456 1681 168 72 14 chr6 159958923 159959268 -29320286 + MLT1A1 LTR MaLR 1 365 0 200 59 29 0 chr6 159959329 159959363 -29320191 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 327 221 15 0 chr6 159959589 159959657 -29319897 + L2 LINE L2 3243 3311 -2 279 281 0 31 chr6 159960054 159960150 -29319404 + GA-rich Low_complexity Low_complexity 3 95 0 22 35 0 0 chr6 159960211 159960240 -29319314 + AT_rich Low_complexity Low_complexity 1 29 0 838 169 28 28 chr6 159960911 159961089 -29318465 + L1MB8 LINE L1 6001 6178 0 1119 265 121 14 chr6 159961549 159961866 -29317688 + LTR33A LTR ERVL 60 418 -105 855 193 69 144 chr6 159961866 159962270 -29317284 + MLT1A2 LTR MaLR 1 374 0 1119 265 121 14 chr6 159962270 159962389 -29317165 + LTR33A LTR ERVL 418 523 0 2088 92 3 44 chr6 159962663 159962797 -29316757 + AluSx SINE Alu 3 141 -176 2554 65 0 7 chr6 159962797 159963105 -29316449 + AluY SINE Alu 1 306 -5 2088 92 3 44 chr6 159963105 159963297 -29316257 + AluSx SINE Alu 141 317 0 5604 286 31 38 chr6 159964198 159966411 -29313143 - HERV3 LTR ERV1 -5604 2822 627 1723 204 29 27 chr6 159966560 159967010 -29312544 + MER34 LTR ERV1 89 539 -3 1252 156 52 17 chr6 159967205 159967494 -29312060 - L1MA8 LINE L1 -2 6289 5991 2122 112 3 16 chr6 159967709 159968049 -29311505 - AluSc SINE Alu 0 309 1 444 273 20 0 chr6 159968798 159968948 -29310606 + MER103 DNA DNA 2 154 -12 192 273 30 15 chr6 159970426 159970492 -29309062 + MIR SINE MIR 166 232 -30 28 0 0 0 chr6 159972312 159972340 -29307214 + AT_rich Low_complexity Low_complexity 1 28 0 258 241 0 0 chr6 159972381 159972435 -29307119 + L1MEd LINE L1 440 493 -5626 508 240 69 54 chr6 159972765 159972965 -29306589 + L1MEd LINE L1 904 1112 -5007 2238 118 0 3 chr6 159972965 159973269 -29306285 + AluSx SINE Alu 1 303 -9 508 240 69 54 chr6 159973269 159973385 -29306169 + L1MEd LINE L1 1112 1225 -4894 572 220 17 0 chr6 159973568 159973686 -29305868 - L2 LINE L2 0 3313 3194 414 280 28 9 chr6 159974122 159974229 -29305325 + L2 LINE L2 3197 3305 -8 1558 75 5 5 chr6 159978453 159978706 -29300848 - AluY SINE Alu 0 311 83 183 246 18 18 chr6 159978734 159978791 -29300763 - L2 LINE L2 0 3313 3257 869 294 51 40 chr6 159978972 159979400 -29300154 + MLT1J LTR MaLR 50 482 -29 326 335 31 62 chr6 159979569 159979763 -29299791 - MIR SINE MIR -44 218 31 974 154 21 16 chr6 159980284 159980472 -29299082 + MER53 DNA DNA 1 189 0 288 282 142 53 chr6 159981182 159981505 -29298049 - L1ME4a LINE L1 -222 5899 5548 3797 174 91 13 chr6 159981930 159982767 -29296787 + L1MA9 LINE L1 5254 6155 -157 1081 209 9 5 chr6 159983263 159983483 -29296071 - MER58A DNA MER1_type -2 222 2 2694 88 6 6 chr6 159983606 159983970 -29295584 - THE1B LTR MaLR 0 364 1 1948 95 0 0 chr6 159984068 159984311 -29295243 + AluY SINE Alu 54 296 -15 235 304 14 14 chr6 159985952 159986021 -29293533 + MIR SINE MIR 7 75 -187 1782 177 3 10 chr6 159986371 159986671 -29292883 + AluSx SINE Alu 2 299 -13 482 210 40 76 chr6 159986735 159987051 -29292503 + MER31B LTR ERV1 33 510 -4 27 0 0 0 chr6 159987149 159987176 -29292378 + AT_rich Low_complexity Low_complexity 1 27 0 2518 66 0 22 chr6 159988329 159988647 -29290907 + AluY SINE Alu 1 311 0 901 226 74 63 chr6 159988769 159989163 -29290391 - MLT1C LTR MaLR 0 467 70 248 214 120 34 chr6 159989216 159989262 -29290292 - L1MC/D LINE L1 -1983 5825 5784 1674 160 20 29 chr6 159989262 159989612 -29289942 + MER7A DNA MER2_type 1 345 -1 248 214 120 34 chr6 159989612 159989682 -29289872 - L1MC/D LINE L1 -2024 5784 5699 310 308 27 55 chr6 159989711 159989857 -29289697 + L2 LINE L2 3161 3302 -11 275 286 58 0 chr6 159989898 159990050 -29289504 - L1MC/D LINE L1 -569 5597 5434 217 383 93 0 chr6 159990085 159990192 -29289362 + L2 LINE L2 3146 3262 -10 445 304 150 62 chr6 159990244 159990550 -29289004 - MLT1C LTR MaLR 0 467 135 2484 112 22 0 chr6 159990561 159990917 -29288637 - THE1B LTR MaLR 0 364 1 322 231 11 11 chr6 159990926 159991017 -29288537 + MLT1C LTR MaLR 53 143 -324 1796 132 5 43 chr6 159991164 159991536 -29288018 - LTR60 LTR ERV1 0 586 229 1446 162 0 25 chr6 159991536 159991820 -29287734 - LTR60 LTR ERV1 -307 279 3 184 169 56 141 chr6 159992656 159992727 -29286827 - MER5B DNA MER1_type -45 133 69 1749 152 3 33 chr6 159992930 159993232 -29286322 - AluJb SINE Alu -19 293 1 1725 227 19 14 chr6 159993437 159993893 -29285661 + MER89 LTR ERV1 3 559 0 1029 207 136 65 chr6 159993907 159994245 -29285309 - MER93b LTR ERV1 0 373 12 789 254 25 51 chr6 159994254 159994609 -29284945 - MER31-int LTR ERV1 -384 7153 6808 575 258 7 20 chr6 159994725 159994876 -29284678 - MER31-int LTR ERV1 -941 3930 3782 5598 206 81 25 chr6 159994900 159996535 -29283019 - MER31-int LTR ERV1 -603 4333 2608 24 0 0 0 chr6 159996585 159996609 -29282945 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr6 159996635 159996659 -29282895 + AT_rich Low_complexity Low_complexity 1 24 0 389 205 92 100 chr6 159996758 159996987 -29282567 - MER31-int LTR ERV1 -2974 1962 1736 363 249 9 105 chr6 159997053 159997282 -29282272 - LTR57-int LTR ERVL -3832 1511 1305 * 845 233 40 79 chr6 159997156 159997735 -29281819 - MER31-int LTR ERV1 -3251 1685 1130 295 156 78 13 chr6 159997960 159998037 -29281517 - MER31-int LTR ERV1 -3119 1817 1736 355 238 13 117 chr6 159998103 159998334 -29281220 - LTR57-int LTR ERVL -3832 1511 1305 * 1454 211 95 63 chr6 159998207 159998986 -29280568 - MER31-int LTR ERV1 -3251 1685 882 674 239 5 37 chr6 159999606 159999794 -29279760 - MER93b LTR ERV1 0 373 192 2034 73 0 0 chr6 159999798 160000046 -29279508 - AluY SINE Alu -40 271 24 379 211 135 10 chr6 160000062 160000166 -29279388 - MER93b LTR ERV1 -244 129 13 2408 121 11 16 chr6 160000698 160001071 -29278483 - THE1C LTR MaLR 0 375 5 34 0 0 0 chr6 160002420 160002454 -29277100 + AT_rich Low_complexity Low_complexity 1 34 0 1784 71 28 0 chr6 160002611 160002865 -29276689 - L1MA1 LINE L1 -5 6297 6037 1131 332 17 7 chr6 160002909 160003328 -29276226 + LTR16A LTR ERVL 19 441 -9 1952 318 81 43 chr6 160003555 160003794 -29275760 + HERV16 LTR ERVL 251 479 -5175 2287 80 3 7 chr6 160003794 160004082 -29275472 + AluSg SINE Alu 1 287 -23 1952 318 81 43 chr6 160004082 160004094 -29275460 + HERV16 LTR ERVL 479 489 -5165 2030 98 0 86 chr6 160004094 160004409 -29275145 + AluSx SINE Alu 1 288 -24 1952 318 81 43 chr6 160004409 160007404 -29272150 + HERV16 LTR ERVL 489 3707 -1947 1024 330 81 44 chr6 160007654 160008258 -29271296 + HERV16 LTR ERVL 4099 4679 -1085 2173 87 0 14 chr6 160008258 160008583 -29270971 - AluY SINE Alu 0 321 1 1024 330 81 44 chr6 160008583 160009098 -29270456 + HERV16 LTR ERVL 4679 5261 -503 727 287 70 32 chr6 160009326 160009671 -29269883 + LTR16A LTR ERVL 17 374 -76 353 225 67 11 chr6 160010795 160010884 -29268670 + MER5A DNA MER1_type 1 94 -95 1068 223 6 31 chr6 160012417 160012679 -29266875 + L1M2 LINE L1 2379 2633 -4216 548 101 13 0 chr6 160012679 160012758 -29266796 + MADE1 DNA Mariner 1 80 0 1068 223 6 31 chr6 160012758 160012814 -29266740 + L1M2 LINE L1 2633 2689 -4160 2694 91 0 0 chr6 160015758 160016111 -29263443 - THE1A LTR MaLR 0 355 3 3297 142 7 16 chr6 160016113 160016685 -29262869 - THE1A-int LTR MaLR 0 1580 1014 13193 96 19 20 chr6 160018039 160020152 -29259402 - HERVH LTR ERV1 -5066 2647 537 6082 137 7 17 chr6 160020574 160021747 -29257807 + L1MA3 LINE L1 5143 6305 0 21 36 0 0 chr6 160021747 160021775 -29257779 + AT_rich Low_complexity Low_complexity 1 28 0 239 233 0 0 chr6 160021872 160021915 -29257639 + (CA)n Simple_repeat Simple_repeat 2 44 0 548 345 55 0 chr6 160021953 160022260 -29257294 + L1M2 LINE L1 2817 3140 -3708 379 244 0 12 chr6 160022304 160022390 -29257164 + MLT1D LTR MaLR 306 390 -115 2701 244 55 28 chr6 160022441 160023224 -29256330 - MER21B LTR ERV1 -48 815 12 336 234 112 0 chr6 160023273 160023380 -29256174 + MLT1D LTR MaLR 387 505 0 274 316 83 23 chr6 160023383 160023599 -29255955 + L1ME LINE L1 5341 5581 -589 2174 123 3 0 chr6 160023599 160023899 -29255655 + AluSq SINE Alu 1 301 -12 274 316 83 23 chr6 160023899 160023983 -29255571 + L1ME LINE L1 5581 5659 -511 1180 254 54 20 chr6 160023997 160024347 -29255207 - MER21B LTR ERV1 -51 812 451 5998 192 80 34 chr6 160024708 160026412 -29253142 - LTR49-int LTR ERV1 -694 4242 2460 345 263 13 53 chr6 160026413 160026565 -29252989 - LTR49-int LTR ERV1 -2613 2510 2365 2330 94 7 7 chr6 160026574 160026882 -29252672 - AluSc SINE Alu -1 308 1 1124 221 64 39 chr6 160027032 160027431 -29252123 - LTR49-int LTR ERV1 -3139 1797 1381 2288 91 3 13 chr6 160027431 160027738 -29251816 - AluSx SINE Alu -8 304 1 1124 221 64 39 chr6 160027738 160027855 -29251699 - LTR49-int LTR ERV1 -3555 1381 1268 810 228 31 47 chr6 160027862 160028116 -29251438 + Tigger3b DNA MER2_type 6 255 -976 1002 169 161 8 chr6 160028116 160028365 -29251189 + LOR1b LTR ERV1 2 288 -173 * 3756 161 97 4 chr6 160028363 160029171 -29250383 + Tigger3b DNA MER2_type 279 1162 -69 828 245 42 24 chr6 160029171 160029545 -29250009 - LTR38 LTR ERV1 0 556 137 369 192 0 64 chr6 160029677 160029755 -29249799 + Tigger3b DNA MER2_type 1169 1241 0 524 168 79 89 chr6 160029816 160029948 -29249606 - LTR49-int LTR ERV1 -3708 1228 1097 2121 129 129 26 chr6 160029948 160030019 -29249535 - MSTA LTR MaLR 0 428 366 2179 115 0 7 chr6 160030019 160030314 -29249240 + AluSx SINE Alu 1 293 -19 2121 129 129 26 chr6 160030314 160030630 -29248924 - MSTA LTR MaLR -62 366 1 524 168 79 89 chr6 160030630 160030687 -29248867 - LTR49-int LTR ERV1 -3839 1097 1041 841 188 0 7 chr6 160030820 160030969 -29248585 - MER8 DNA MER2_type 0 239 92 850 209 32 23 chr6 160031034 160031328 -29248226 - MER34C LTR ERV1 -185 400 59 312 233 0 27 chr6 160031361 160031434 -29248120 - LTR49-int LTR ERV1 -3710 2621 2551 2239 88 3 16 chr6 160031521 160031828 -29247726 - AluY SINE Alu -8 303 1 196 279 96 39 chr6 160033464 160033568 -29245986 - MIR SINE MIR -117 145 36 258 222 0 0 chr6 160033856 160033910 -29245644 - MER34C LTR ERV1 -473 112 59 1640 183 5 73 chr6 160034898 160035270 -29244284 + MER7A DNA MER2_type 2 346 0 25 0 0 0 chr6 160035922 160035947 -29243607 + AT_rich Low_complexity Low_complexity 1 25 0 35 0 0 0 chr6 160036522 160036557 -29242997 + AT_rich Low_complexity Low_complexity 1 35 0 282 103 59 29 chr6 160036741 160036809 -29242745 + CT-rich Low_complexity Low_complexity 1 70 0 316 324 83 0 chr6 160037286 160037431 -29242123 + MIR SINE MIR 68 224 -38 * 447 240 41 16 chr6 160037415 160037536 -29242018 + L2 LINE L2 3147 3270 -2 1719 170 3 10 chr6 160038491 160038785 -29240769 + AluJo SINE Alu 1 292 -20 242 300 14 14 chr6 160039295 160039365 -29240189 - L2 LINE L2 -10 3303 3234 309 272 9 88 chr6 160040021 160040135 -29239419 - MIR SINE MIR -70 192 88 212 351 49 3 chr6 160041201 160041337 -29238217 - MIR SINE MIR -49 159 15 2319 98 0 0 chr6 160042993 160043300 -29236254 + AluSc SINE Alu 1 307 -2 293 270 100 10 chr6 160043327 160043427 -29236127 + MIR SINE MIR 64 172 -90 282 280 80 24 chr6 160044541 160044666 -29234888 + MIR SINE MIR 117 248 -14 339 348 58 22 chr6 160046982 160047120 -29232434 - L3 LINE CR1 -39 1538 1396 378 272 31 73 chr6 160047159 160047279 -29232275 + MIR SINE MIR 67 190 -72 2188 91 0 63 chr6 160047279 160047597 -29231957 - AluSq SINE Alu -15 298 1 378 272 31 73 chr6 160047597 160047615 -29231939 + MIR SINE MIR 190 207 -55 1895 117 0 4 chr6 160047615 160047872 -29231682 + AluSg SINE Alu 46 301 -9 378 272 31 73 chr6 160047872 160047923 -29231631 + MIR SINE MIR 207 249 -13 403 261 106 66 chr6 160048518 160048867 -29230687 - L1MEd LINE L1 -5710 409 47 180 392 0 29 chr6 160048900 160049002 -29230552 - L3 LINE CR1 -184 1393 1295 453 330 59 18 chr6 160049021 160049242 -29230312 - L3 LINE CR1 -431 1146 917 239 362 21 7 chr6 160050349 160050490 -29229064 + MIR3 SINE MIR 55 197 -11 23 0 0 0 chr6 160050497 160050520 -29229034 + AT_rich Low_complexity Low_complexity 1 23 0 280 296 5 140 chr6 160050800 160050986 -29228568 - MER5A DNA MER1_type -1 188 28 301 296 50 35 chr6 160051252 160051570 -29227984 + L1M4 LINE L1 2717 3039 -3107 698 128 0 0 chr6 160052279 160052388 -29227166 - L1PB1 LINE L1 -4 6147 6039 2332 223 47 34 chr6 160052773 160053328 -29226226 + MER68 LTR ERV1 1 562 0 689 311 44 8 chr6 160053524 160053775 -29225779 - MIR SINE MIR -2 260 1 206 143 0 24 chr6 160054196 160054238 -29225316 + (TC)n Simple_repeat Simple_repeat 2 42 0 343 83 33 0 chr6 160054271 160054331 -29225223 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 581 314 4 39 chr6 160054360 160054615 -29224939 + L1MEc LINE L1 396 641 -5755 1942 234 82 37 chr6 160054619 160055540 -29224014 + L1MEc LINE L1 1372 2334 -4062 1784 156 130 36 chr6 160055541 160055892 -29223662 + MSTA LTR MaLR 1 394 -34 2329 111 0 0 chr6 160055892 160056198 -29223356 - AluSq SINE Alu -7 306 1 1784 156 130 36 chr6 160056198 160056237 -29223317 + MSTA LTR MaLR 394 428 0 5505 136 1 2 chr6 160056261 160057114 -29222440 + L1PA15 LINE L1 5308 6159 -6 2540 248 96 12 chr6 160057108 160058584 -29220970 + L1MEc LINE L1 2303 3987 -2228 * 545 319 29 46 chr6 160058925 160059342 -29220212 - MLT1J LTR MaLR -101 410 1 1393 109 14 54 chr6 160060257 160060478 -29219076 + AluSg/x SINE Alu 78 289 -23 267 330 26 52 chr6 160060728 160060843 -29218711 + MIR SINE MIR 34 145 -63 337 330 108 19 chr6 160061222 160061434 -29218120 - MIR SINE MIR -12 250 20 312 27 0 0 chr6 160061615 160061652 -29217902 + (CA)n Simple_repeat Simple_repeat 2 38 0 367 279 85 81 chr6 160062242 160062489 -29217065 - MIR SINE MIR -2 260 13 184 262 143 12 chr6 160063412 160063496 -29216058 + MIR SINE MIR 86 180 -82 316 245 20 13 chr6 160064255 160064406 -29215148 + CT-rich Low_complexity Low_complexity 3 154 0 271 212 24 12 chr6 160064654 160064739 -29214815 + CT-rich Low_complexity Low_complexity 3 88 0 1781 151 19 10 chr6 160067418 160067730 -29211824 - L1PA15 LINE L1 -2 6163 5849 1092 219 23 35 chr6 160068279 160068441 -29211113 - MLT1C LTR MaLR 0 467 308 2103 140 30 33 chr6 160068441 160068806 -29210748 + THE1B LTR MaLR 1 364 0 1092 219 23 35 chr6 160068806 160068903 -29210651 - MLT1C LTR MaLR -159 308 211 710 178 105 47 chr6 160069034 160069106 -29210448 - MLT1C LTR MaLR -263 204 138 1894 170 16 14 chr6 160069106 160069470 -29210084 - MLT1A1 LTR MaLR 0 365 1 710 178 105 47 chr6 160069470 160069588 -29209966 - MLT1C LTR MaLR -329 138 3 1346 159 65 59 chr6 160070189 160070560 -29208994 + MER93b LTR ERV1 1 373 0 326 256 0 0 chr6 160070675 160070753 -29208801 + L1MC4 LINE L1 6614 6691 -1351 1670 195 10 0 chr6 160071472 160071770 -29207784 + AluJb SINE Alu 1 301 -11 1049 171 5 30 chr6 160071845 160072044 -29207510 + MER3 DNA MER1_type 1 194 -15 5292 89 17 3 chr6 160072644 160073399 -29206155 + MER4E LTR ERV1 1 766 0 848 182 6 0 chr6 160074059 160074235 -29205319 + CT-rich Low_complexity Low_complexity 4 180 0 22 0 0 0 chr6 160074283 160074305 -29205249 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr6 160074750 160074787 -29204767 + AT_rich Low_complexity Low_complexity 1 37 0 189 0 0 0 chr6 160075099 160075120 -29204434 + (CAAAC)n Simple_repeat Simple_repeat 4 24 0 4661 61 8 0 chr6 160075299 160075903 -29203651 - L1PA8 LINE L1 0 6172 5564 197 307 67 0 chr6 160076010 160076085 -29203469 + L2 LINE L2 3148 3227 -45 931 183 16 88 chr6 160076849 160077100 -29202454 - MER110A LTR ERV1 -234 234 2 2385 73 0 10 chr6 160077232 160077546 -29202008 - AluY SINE Alu 0 311 1 22 56 0 0 chr6 160078036 160078072 -29201482 + AT_rich Low_complexity Low_complexity 1 36 0 183 100 0 0 chr6 160078225 160078255 -29201299 + (CAG)n Simple_repeat Simple_repeat 2 31 0 2248 84 10 0 chr6 160078265 160078564 -29200990 - AluY SINE Alu -9 302 1 473 330 48 22 chr6 160078709 160078939 -29200615 - MER102b DNA MER1_type 0 341 106 271 233 83 50 chr6 160079380 160079500 -29200054 + MER5A DNA MER1_type 54 177 -12 1075 165 33 0 chr6 160079541 160079723 -29199831 - MER5A DNA MER1_type 0 189 2 280 238 32 0 chr6 160080020 160080083 -29199471 - L2 LINE L2 -1 3312 3248 200 233 0 0 chr6 160080118 160080161 -29199393 - L2 LINE L2 -4 3309 3267 29 0 0 0 chr6 160081049 160081078 -29198476 + AT_rich Low_complexity Low_complexity 1 29 0 2732 160 4 32 chr6 160081204 160081600 -29197954 + MER66B LTR ERV1 1 382 -104 2477 64 0 0 chr6 160081600 160081895 -29197659 + AluY SINE Alu 1 295 -16 2732 160 4 32 chr6 160081895 160081992 -29197562 + MER66B LTR ERV1 382 480 -6 194 353 59 0 chr6 160082021 160082106 -29197448 - MIR3 SINE MIR -30 178 89 232 231 121 11 chr6 160082770 160082861 -29196693 + L2 LINE L2 2657 2757 -557 * 241 218 8 95 chr6 160082851 160082957 -29196597 + MIR SINE MIR 63 156 -73 276 263 105 35 chr6 160083206 160083320 -29196234 + L2 LINE L2 3183 3304 -9 1090 260 151 37 chr6 160083432 160083890 -29195664 - L2 LINE L2 0 3313 2804 183 319 50 56 chr6 160083901 160084061 -29195493 + L2 LINE L2 539 697 -2617 2030 100 0 75 chr6 160084077 160084398 -29195156 + AluSc SINE Alu 1 297 -12 731 301 184 16 chr6 160085014 160085466 -29194088 - L1MC4a LINE L1 -1949 5859 5332 180 0 0 0 chr6 160086633 160086653 -29192901 + (TTG)n Simple_repeat Simple_repeat 2 21 0 411 317 61 38 chr6 160086853 160087279 -29192275 + L2 LINE L2 1612 2047 -1267 197 276 0 105 chr6 160088167 160088243 -29191311 + L2 LINE L2 3122 3189 -83 197 206 0 0 chr6 160088228 160088262 -29191292 + MIR SINE MIR 213 246 -16 206 239 22 0 chr6 160088350 160088396 -29191158 + MIR SINE MIR 99 145 -63 503 294 103 50 chr6 160089420 160089927 -29189627 - L2 LINE L2 -1 3312 2777 1632 213 106 82 chr6 160090195 160091000 -29188554 - LTR1B LTR ERV1 0 826 1 196 365 12 0 chr6 160091017 160091102 -29188452 + MIR SINE MIR 171 256 -6 1708 147 33 11 chr6 160093588 160093885 -29185669 + AluSx SINE Alu 5 307 0 25 0 0 0 chr6 160095359 160095384 -29184170 + AT_rich Low_complexity Low_complexity 1 25 0 194 231 0 0 chr6 160095821 160095860 -29183694 + L2 LINE L2 3267 3305 -8 308 303 55 0 chr6 160099387 160099496 -29180058 - MIR3 SINE MIR -6 202 88 237 404 58 0 chr6 160099816 160099920 -29179634 + L2 LINE L2 3197 3306 -7 24 0 0 0 chr6 160100621 160100645 -29178909 + AT_rich Low_complexity Low_complexity 1 24 0 192 200 0 0 chr6 160101729 160101774 -29177780 + (CA)n Simple_repeat Simple_repeat 1 45 0 1878 204 62 32 chr6 160102033 160102534 -29177020 - LTR40a LTR ERVL 0 519 4 198 143 0 0 chr6 160102662 160102697 -29176857 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 718 286 135 23 chr6 160103207 160103591 -29175963 - MARNA DNA Mariner -25 561 135 196 283 22 33 chr6 160103990 160104023 -29175531 + MIR SINE MIR 117 149 -113 2160 98 7 7 chr6 160104023 160104320 -29175234 - AluSg SINE Alu -11 299 3 196 283 22 33 chr6 160104320 160104378 -29175176 + MIR SINE MIR 149 207 -55 1828 196 2 25 chr6 160107008 160107371 -29172183 - MLT2C1 LTR ERVL -39 515 1 281 360 0 0 chr6 160107395 160107484 -29172070 + L2 LINE L2 2550 2638 -676 660 323 57 20 chr6 160107486 160107786 -29171768 - MLT1I LTR MaLR -2 407 97 517 359 47 64 chr6 160107856 160107972 -29171582 + L2 LINE L2 2642 2758 -555 1585 214 47 80 chr6 160107972 160108028 -29171526 - MLT2B1 LTR ERVL 0 520 464 743 0 11 0 chr6 160108028 160108115 -29171439 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 1585 214 47 80 chr6 160108115 160108596 -29170958 - MLT2B1 LTR ERVL -56 464 1 517 359 47 64 chr6 160108596 160109164 -29170390 + L2 LINE L2 2758 3312 -1 502 242 101 64 chr6 160110090 160110230 -29169324 - L1ME1 LINE L1 -49 6117 5965 768 186 0 0 chr6 160110230 160110359 -29169195 - FLAM_A SINE Alu 0 133 5 502 242 101 64 chr6 160110359 160110437 -29169117 - L1ME1 LINE L1 -201 5965 5891 707 292 50 17 chr6 160111039 160111279 -29168275 + MIR SINE MIR 8 255 -7 180 0 0 0 chr6 160111315 160111335 -29168219 + (T)n Simple_repeat Simple_repeat 1 20 0 259 258 15 0 chr6 160113323 160113389 -29166165 - MLT1K LTR MaLR -5 583 517 571 285 48 24 chr6 160114161 160114368 -29165186 + MIR SINE MIR 45 256 -6 237 33 0 0 chr6 160115099 160115129 -29164425 + (CA)n Simple_repeat Simple_repeat 2 31 0 303 382 8 15 chr6 160115278 160115409 -29164145 + L3 LINE CR1 1084 1213 -364 3120 63 0 2 chr6 160115700 160116099 -29163455 + L1PA7 LINE L1 5753 6150 -4 2264 101 0 16 chr6 160116376 160116554 -29163000 - AluSx SINE Alu -1 311 139 2409 81 0 0 chr6 160116554 160116861 -29162693 - AluY SINE Alu -2 309 3 2264 101 0 16 chr6 160116861 160116998 -29162556 - AluSx SINE Alu -173 139 1 1717 200 42 59 chr6 160118332 160118508 -29161046 + MLT1C LTR MaLR 2 179 -288 2061 106 29 0 chr6 160118508 160118828 -29160726 + AluSq SINE Alu 3 330 0 1717 200 42 59 chr6 160118828 160119124 -29160430 + MLT1C LTR MaLR 179 467 0 330 283 62 0 chr6 160119302 160119415 -29160139 - MER94 DNA DNA -13 121 2 2350 271 35 7 chr6 160120738 160121331 -29158223 + MLT2F LTR ERVL 1 610 -53 285 173 0 0 chr6 160121372 160121424 -29158130 + MLT2F LTR ERVL 612 663 0 540 0 0 0 chr6 160121464 160121524 -29158030 + (TC)n Simple_repeat Simple_repeat 2 61 0 234 0 0 0 chr6 160121523 160121549 -29158005 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 496 267 74 86 chr6 160121567 160121997 -29157557 - MLT1J1 LTR MaLR -9 437 13 23 78 0 0 chr6 160123614 160123665 -29155889 + AT_rich Low_complexity Low_complexity 1 51 0 204 359 156 4 chr6 160123700 160123956 -29155598 + L3 LINE CR1 787 1081 -496 374 0 22 0 chr6 160124046 160124092 -29155462 + (CA)n Simple_repeat Simple_repeat 1 47 0 480 280 90 72 chr6 160124798 160125014 -29154540 + L1MEc LINE L1 679 882 -5188 1862 125 24 21 chr6 160125014 160125301 -29154253 + AluSx SINE Alu 11 298 -14 480 280 90 72 chr6 160125301 160125509 -29154045 + L1MEc LINE L1 882 1085 -4985 546 302 22 6 chr6 160125540 160125719 -29153835 + MER58A DNA MER1_type 42 223 -1 860 279 58 35 chr6 160125881 160126487 -29153067 + L1MEc LINE L1 2125 2744 -3336 2913 183 33 18 chr6 160126542 160126742 -29152812 - MER68 LTR ERV1 -2 560 364 2382 219 27 39 chr6 160126742 160127303 -29152251 - MLT2B3 LTR ERVL 0 554 1 2913 183 33 18 chr6 160127303 160127654 -29151900 - MER68 LTR ERV1 -198 364 1 1832 261 119 15 chr6 160127657 160128605 -29150949 + L1MEc LINE L1 2824 3870 -2210 1268 223 80 50 chr6 160129058 160129366 -29150188 + MLT1A2 LTR MaLR 1 298 -76 2128 90 38 3 chr6 160129366 160129654 -29149900 + AluSx SINE Alu 1 298 -14 2210 92 0 3 chr6 160129657 160129972 -29149582 + AluSq SINE Alu 1 314 0 1268 223 80 50 chr6 160129972 160130021 -29149533 + MLT1A2 LTR MaLR 299 374 0 1768 202 24 52 chr6 160130754 160130826 -29148728 - MLT2D LTR ERVL 0 414 342 279 0 0 0 chr6 160130826 160130857 -29148697 + (GA)n Simple_repeat Simple_repeat 2 32 0 1768 202 24 52 chr6 160130857 160131210 -29148344 - MLT2D LTR ERVL -72 342 1 2333 156 19 66 chr6 160131372 160131596 -29147958 + MER88 LTR ERVL 1 191 -273 195 42 0 0 chr6 160131596 160131620 -29147934 + (GA)n Simple_repeat Simple_repeat 1 24 0 2333 156 19 66 chr6 160131620 160131882 -29147672 + MER88 LTR ERVL 191 464 0 291 247 39 0 chr6 160131891 160131968 -29147586 + MLT1J2 LTR MaLR 67 146 -304 32183 43 3 0 chr6 160132673 160137464 -29142090 - L1PA5 LINE L1 0 6154 1351 288 284 65 48 chr6 160137593 160137885 -29141669 + L1MEc LINE L1 1970 2266 -4130 490 286 35 10 chr6 160138210 160138413 -29141141 - L1ME3A LINE L1 -219 5951 5744 280 271 183 44 chr6 160138431 160138770 -29140784 - L1ME3A LINE L1 -505 5657 5272 499 286 117 23 chr6 160138896 160139288 -29140266 - L1ME3A LINE L1 -1842 4304 3876 336 161 0 0 chr6 160139372 160139428 -29140126 - MLT1A1 LTR MaLR 0 365 310 * 1289 175 18 9 chr6 160139421 160139644 -29139910 + MLT1A1 LTR MaLR 139 363 -2 243 268 52 31 chr6 160139658 160139755 -29139799 - MIR SINE MIR -128 134 36 183 80 0 0 chr6 160140611 160140636 -29138918 + (CAA)n Simple_repeat Simple_repeat 2 26 0 866 269 63 10 chr6 160143644 160144027 -29135527 - L1MC4 LINE L1 -11 8031 7629 878 238 0 11 chr6 160144337 160144522 -29135032 - MER58A DNA MER1_type -5 219 37 1787 153 36 0 chr6 160144524 160144805 -29134749 + AluSx SINE Alu 6 296 -16 1620 246 110 32 chr6 160145550 160146152 -29133402 - L1ME3A LINE L1 -4 6100 5452 1096 279 105 46 chr6 160146173 160147122 -29132432 - L1ME3A LINE L1 -846 5234 4187 312 131 0 0 chr6 160147122 160147183 -29132371 - L1PB1 LINE L1 0 6151 6091 1096 279 105 46 chr6 160147183 160147529 -29132025 - L1ME3A LINE L1 -1893 4187 3863 1260 157 36 16 chr6 160147551 160147799 -29131755 - L1PB3 LINE L1 -35 6119 5867 915 244 43 148 chr6 160147800 160148223 -29131331 - L1ME3A LINE L1 -2217 3863 3397 948 109 14 0 chr6 160148223 160148370 -29131184 - AluY SINE Alu -7 304 156 915 244 43 148 chr6 160148370 160148936 -29130618 - L1ME3A LINE L1 -2683 3397 2847 2098 133 0 7 chr6 160149037 160149339 -29130215 - AluSx SINE Alu -12 300 1 335 346 60 48 chr6 160149419 160149688 -29129866 - L1ME3A LINE L1 -5796 274 3 314 360 92 46 chr6 160150010 160150357 -29129197 - L2 LINE L2 -13 3259 2897 247 315 94 64 chr6 160150501 160150736 -29128818 - L2 LINE L2 -1318 1996 1755 283 303 61 10 chr6 160151001 160151100 -29128454 - L2 LINE L2 -1 3271 3168 2328 126 19 19 chr6 160151256 160151620 -29127934 + THE1B LTR MaLR 1 364 0 12022 91 2 1 chr6 160151620 160153199 -29126355 + THE1B-int LTR MaLR 1 1580 0 1616 179 72 23 chr6 160153199 160153546 -29126008 + THE1B LTR MaLR 1 364 0 441 306 61 27 chr6 160154549 160154696 -29124858 - L2 LINE L2 0 3272 3121 39 0 0 0 chr6 160154981 160155020 -29124534 + AT_rich Low_complexity Low_complexity 1 39 0 767 147 93 0 chr6 160155020 160155170 -29124384 - L1MA2 LINE L1 -16 7707 7544 15621 156 34 13 chr6 160155171 160158602 -29120952 - L1MA2 LINE L1 -619 7104 3746 2325 113 0 0 chr6 160158602 160158904 -29120650 - AluSx SINE Alu -10 302 1 15621 156 34 13 chr6 160158904 160158989 -29120565 - L1MA2 LINE L1 -3977 3746 3664 279 0 0 0 chr6 160158989 160159020 -29120534 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 15621 156 34 13 chr6 160159020 160159203 -29120351 - L1MA2 LINE L1 -4059 3664 3486 7044 63 18 1 chr6 160159203 160160085 -29119469 + MER11D LTR ERVK 1 897 0 15621 156 34 13 chr6 160160085 160160108 -29119446 - L1MA2 LINE L1 -4237 3486 3465 183 80 0 0 chr6 160160108 160160133 -29119421 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 15621 156 34 13 chr6 160160133 160161778 -29117776 - L1MA2 LINE L1 -4258 3465 1638 2288 215 31 14 chr6 160161758 160162242 -29117312 - L1MA2 LINE L1 -7061 504 13 * 223 357 12 12 chr6 160162845 160162929 -29116625 + L2 LINE L2 2899 2982 -331 663 256 45 103 chr6 160162963 160163389 -29116165 + MLT1I LTR MaLR 7 407 -2 231 433 67 0 chr6 160163507 160163641 -29115913 + L2 LINE L2 3129 3271 -1 1029 317 47 6 chr6 160164193 160164556 -29114998 + LTR16C LTR ERVL 114 491 0 27 0 0 0 chr6 160164579 160164606 -29114948 + AT_rich Low_complexity Low_complexity 1 27 0 516 194 0 20 chr6 160164608 160164706 -29114848 + FLAM_C SINE Alu 35 130 -13 219 171 26 26 chr6 160164729 160164805 -29114749 + A-rich Low_complexity Low_complexity 5 80 0 249 316 20 20 chr6 160166383 160166481 -29113073 + MIR SINE MIR 33 130 -78 * 447 252 19 0 chr6 160166479 160166586 -29112968 + L2 LINE L2 3205 3313 0 233 204 0 23 chr6 160167104 160167148 -29112406 + L2 LINE L2 3224 3266 -6 225 0 0 0 chr6 160168452 160168477 -29111077 + (T)n Simple_repeat Simple_repeat 1 25 0 323 287 147 0 chr6 160168530 160168666 -29110888 - L2 LINE L2 -9 3304 3149 336 309 97 30 chr6 160169251 160169493 -29110061 - MIR SINE MIR -8 254 1 1413 195 50 43 chr6 160169671 160169994 -29109560 - MER2 DNA MER2_type -19 326 2 726 111 0 0 chr6 160170137 160170245 -29109309 - AluSg/x SINE Alu -9 301 194 222 128 0 0 chr6 160172447 160172486 -29107068 + (TG)n Simple_repeat Simple_repeat 2 40 0 372 264 11 11 chr6 160173260 160173351 -29106203 + MIR SINE MIR 66 156 -106 374 346 0 0 chr6 160174646 160174773 -29104781 + LTR16A LTR ERVL 214 340 -110 253 321 45 18 chr6 160175190 160175302 -29104252 - MIR SINE MIR -71 137 23 22 35 0 0 chr6 160175687 160175716 -29103838 + AT_rich Low_complexity Low_complexity 1 29 0 1927 158 3 3 chr6 160178499 160178797 -29100757 + AluJo SINE Alu 2 299 -13 559 251 98 10 chr6 160179462 160179665 -29099889 - L1ME3 LINE L1 -7 6155 5935 2083 124 0 3 chr6 160179936 160180234 -29099320 + AluSq SINE Alu 1 297 -16 276 170 0 0 chr6 160180234 160180287 -29099267 + (TA)n Simple_repeat Simple_repeat 2 54 0 320 299 213 28 chr6 160180789 160181043 -29098511 - L2 LINE L2 -818 2496 2196 289 255 60 71 chr6 160181047 160181231 -29098323 - MER112 DNA MER1_type -6 254 73 361 220 30 15 chr6 160181356 160181488 -29098066 + (TA)n Simple_repeat Simple_repeat 1 134 0 185 62 0 31 chr6 160181562 160181594 -29097960 + (CATATA)n Simple_repeat Simple_repeat 3 33 0 906 272 74 40 chr6 160181600 160181637 -29097917 - L2 LINE L2 -1135 2179 2145 2962 115 26 2 chr6 160181637 160182089 -29097465 + MER4C LTR ERV1 3 465 0 906 272 74 40 chr6 160182089 160182160 -29097394 - L2 LINE L2 -1169 2145 2078 2090 196 83 34 chr6 160182160 160182656 -29096898 + MLT2B1 LTR ERVL 1 520 0 906 272 74 40 chr6 160182656 160182951 -29096603 - L2 LINE L2 -1236 2078 1761 29 0 0 0 chr6 160183001 160183030 -29096524 + AT_rich Low_complexity Low_complexity 1 29 0 227 236 0 0 chr6 160183122 160183177 -29096377 + MER117 DNA MER1_type 40 94 -103 2209 120 3 0 chr6 160183400 160183708 -29095846 + AluY SINE Alu 1 309 -2 1805 198 37 6 chr6 160183808 160184162 -29095392 + MLT1A1 LTR MaLR 1 365 0 2636 110 8 3 chr6 160184541 160184914 -29094640 + THE1C LTR MaLR 1 375 0 10225 121 33 4 chr6 160184914 160186450 -29093104 + THE1C-int LTR MaLR 1 1580 0 2706 97 14 3 chr6 160186450 160186821 -29092733 + THE1C LTR MaLR 1 375 0 240 271 215 19 chr6 160187007 160187114 -29092440 - MIR SINE MIR -57 205 78 272 263 141 0 chr6 160188989 160189088 -29090466 - L1MC5 LINE L1 -46 7915 7803 827 234 74 8 chr6 160189269 160189525 -29090029 - L1MC5 LINE L1 -727 7234 6962 1741 173 16 10 chr6 160189633 160189940 -29089614 - AluJb SINE Alu -3 309 1 1958 297 105 38 chr6 160189946 160191514 -29088040 - L1MC4a LINE L1 -881 6927 5254 2357 76 0 3 chr6 160191836 160192138 -29087416 + AluY SINE Alu 1 301 -10 21 89 0 0 chr6 160193420 160193476 -29086078 + AT_rich Low_complexity Low_complexity 1 56 0 898 271 96 87 chr6 160193938 160195041 -29084513 + L1MEd LINE L1 11 1180 -5130 541 0 29 0 chr6 160195041 160195110 -29084444 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 898 271 96 87 chr6 160195110 160195590 -29083964 + L1MEd LINE L1 1180 1655 -4655 13079 179 16 16 chr6 160195795 160197207 -29082347 + L1M1 LINE L1 14 1425 -6140 2320 102 0 0 chr6 160197207 160197510 -29082044 + AluSp SINE Alu 1 303 -10 13079 179 16 16 chr6 160197510 160200276 -29079278 + L1M1 LINE L1 1425 4508 -3057 11377 169 13 6 chr6 160200275 160200454 -29079100 + L1MA2 LINE L1 2868 3044 -3243 * 2211 123 3 7 chr6 160200454 160200762 -29078792 - AluSp SINE Alu -6 307 1 11377 169 13 6 chr6 160200762 160203739 -29075815 + L1MA2 LINE L1 3044 6045 -242 12384 163 116 51 chr6 160203740 160206126 -29073428 + L1PA8 LINE L1 1 2230 -4231 11578 94 23 56 chr6 160206126 160208612 -29070942 + L1PA8 LINE L1 4003 6486 -1 12384 163 116 51 chr6 160208612 160208818 -29070736 + L1PA8 LINE L1 2230 2421 -4040 596 56 0 0 chr6 160208818 160208890 -29070664 + tRNA-Gln-CAA tRNA tRNA 1 72 -3 12384 163 116 51 chr6 160208890 160208908 -29070646 + L1PA8 LINE L1 2421 2436 -4025 2177 113 10 0 chr6 160208908 160209199 -29070355 + AluSp SINE Alu 1 294 -19 2327 94 0 7 chr6 160209204 160209503 -29070051 + AluSc SINE Alu 1 297 -12 12384 163 116 51 chr6 160209503 160210145 -29069409 + L1PA8 LINE L1 2439 3038 -3423 234 62 0 0 chr6 160210145 160210177 -29069377 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 12384 163 116 51 chr6 160210177 160211630 -29067924 + L1PA8 LINE L1 3038 5503 -958 1544 311 40 17 chr6 160211655 160212689 -29066865 + HERV16 LTR ERVL 834 1960 -3036 789 327 77 64 chr6 160212744 160214355 -29065199 + HERV16 LTR ERVL 2067 3090 -1906 1024 330 81 44 chr6 160214605 160215209 -29064345 + HERV16 LTR ERVL 4099 4679 -1085 2151 94 0 14 chr6 160215209 160215526 -29064028 - AluY SINE Alu 0 313 1 1024 330 81 44 chr6 160215526 160216041 -29063513 + HERV16 LTR ERVL 4679 5261 -503 730 287 70 32 chr6 160216269 160216614 -29062940 + LTR16A LTR ERVL 17 374 -76 353 225 67 11 chr6 160217737 160217826 -29061728 + MER5A DNA MER1_type 1 94 -95 1068 223 6 31 chr6 160219359 160219621 -29059933 + L1M2 LINE L1 2379 2633 -4216 548 101 13 0 chr6 160219621 160219700 -29059854 + MADE1 DNA Mariner 1 80 0 1068 223 6 31 chr6 160219700 160219756 -29059798 + L1M2 LINE L1 2633 2689 -4160 228 305 42 11 chr6 160224736 160224831 -29054723 + L2 LINE L2 2967 3064 -208 270 316 21 11 chr6 160225058 160225153 -29054401 - MIR3 SINE MIR -36 172 77 237 318 101 54 chr6 160225542 160225671 -29053883 + L2 LINE L2 3134 3268 -4 1896 172 52 3 chr6 160226223 160226571 -29052983 - MLT1A1 LTR MaLR 0 365 1 336 24 0 0 chr6 160227036 160227077 -29052477 + (TG)n Simple_repeat Simple_repeat 2 42 0 319 291 76 44 chr6 160228457 160228641 -29050913 + MLT1K LTR MaLR 418 580 -8 1393 29 0 0 chr6 160228825 160228998 -29050556 - L1PA2 LINE L1 -1491 4655 4483 7853 17 0 0 chr6 160228998 160230488 -29049066 + L1PA2 LINE L1 4666 6155 0 450 325 96 9 chr6 160231017 160231349 -29048205 + L1M4 LINE L1 4232 4592 -1554 743 176 13 0 chr6 160231506 160231659 -29047895 + GA-rich Low_complexity Low_complexity 4 158 0 872 199 4 0 chr6 160231677 160231966 -29047588 + GA-rich Low_complexity Low_complexity 1 290 0 1287 303 132 12 chr6 160231966 160232612 -29046942 - L2 LINE L2 -263 3009 2288 592 251 15 15 chr6 160232612 160232807 -29046747 - MER69B DNA AcHobo 0 1226 1032 4276 169 58 3 chr6 160232822 160233604 -29045950 - LTR1B LTR ERV1 -1 825 1 1040 239 58 37 chr6 160233616 160233964 -29045590 - MER69B DNA AcHobo -347 879 525 2146 221 81 8 chr6 160233978 160234624 -29044930 - L1ME2 LINE L1 -21 6143 5451 1306 292 58 19 chr6 160234628 160235145 -29044409 - MER69B DNA AcHobo -689 537 1 2577 61 3 0 chr6 160235230 160235540 -29044014 + AluY SINE Alu 1 311 0 685 184 7 7 chr6 160235575 160235711 -29043843 - MER57A LTR ERV1 0 403 268 25 31 0 0 chr6 160236234 160236266 -29043288 + AT_rich Low_complexity Low_complexity 1 32 0 1994 148 0 19 chr6 160236268 160236579 -29042975 - AluSx SINE Alu -7 305 1 1724 248 40 40 chr6 160237853 160237924 -29041630 + L1ME3 LINE L1 5567 5637 -525 1968 70 0 0 chr6 160237924 160238167 -29041387 - AluSc SINE Alu -1 308 66 1724 248 40 40 chr6 160238167 160238688 -29040866 + L1ME3 LINE L1 5636 6159 -3 3274 145 49 5 chr6 160238736 160239309 -29040245 + MER7C DNA MER2_type 2 599 -3 540 149 0 0 chr6 160239775 160239862 -29039692 + MSTD LTR MaLR 254 340 -56 1508 196 3 51 chr6 160239979 160240290 -29039264 + AluJo SINE Alu 1 296 -16 938 225 83 37 chr6 160240805 160241129 -29038425 + MER2 DNA MER2_type 6 344 -1 189 0 0 0 chr6 160241134 160241155 -29038399 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 379 348 46 18 chr6 160241355 160241683 -29037871 + HAL1 LINE L1 303 639 -1868 415 284 86 49 chr6 160241861 160242104 -29037450 + HAL1 LINE L1 899 1150 -1357 691 274 92 46 chr6 160242394 160242807 -29036747 + HAL1 LINE L1 1485 1916 -591 2187 177 23 7 chr6 160242828 160243260 -29036294 - MSTB1 LTR MaLR 0 432 1 356 203 8 148 chr6 160243277 160243513 -29036041 + HAL1 LINE L1 1959 2161 -346 717 285 111 25 chr6 160243562 160244122 -29035432 + MLT1G LTR MaLR 2 578 -12 347 288 25 58 chr6 160244129 160244407 -29035147 + HAL1 LINE L1 2239 2507 0 1774 197 62 19 chr6 160244822 160245289 -29034265 - Charlie1b DNA MER1_type -6 517 31 521 287 10 12 chr6 160245478 160245681 -29033873 + MIR SINE MIR 8 255 -7 202 333 61 0 chr6 160245734 160245833 -29033721 + MIR SINE MIR 23 127 -135 280 332 124 16 chr6 160246626 160246819 -29032735 + L2 LINE L2 2840 3053 -219 3706 164 124 25 chr6 160246932 160247684 -29031870 - LTR1B LTR ERV1 0 826 1 310 109 18 18 chr6 160248073 160248128 -29031426 + MER101B LTR ERV1 1 55 -515 1035 262 79 36 chr6 160248344 160248764 -29030790 + LTR51 LTR ERV1 222 659 -12 303 311 106 0 chr6 160249057 160249189 -29030365 + MIR SINE MIR 117 262 0 378 171 0 0 chr6 160249326 160249396 -29030158 + CT-rich Low_complexity Low_complexity 4 73 0 24 0 0 0 chr6 160250315 160250339 -29029215 + AT_rich Low_complexity Low_complexity 1 24 0 333 268 49 63 chr6 160250841 160250983 -29028571 + MIR3 SINE MIR 48 187 -21 941 288 92 43 chr6 160251170 160251562 -29027992 - LTR33 LTR ERVL -6 515 144 1448 185 76 67 chr6 160251562 160251600 -29027954 - MLT2D LTR ERVL 0 414 378 548 65 13 0 chr6 160251600 160251677 -29027877 + (TG)n Simple_repeat Simple_repeat 2 79 0 1448 185 76 67 chr6 160251677 160251719 -29027835 - MLT2D LTR ERVL -36 378 338 333 0 0 0 chr6 160251719 160251756 -29027798 + (GA)n Simple_repeat Simple_repeat 2 38 0 1448 185 76 67 chr6 160251756 160252080 -29027474 - MLT2D LTR ERVL -76 338 5 941 288 92 43 chr6 160252080 160252176 -29027378 - LTR33 LTR ERVL -377 144 3 278 354 0 0 chr6 160252219 160252301 -29027253 + L2 LINE L2 3158 3239 -33 296 243 107 39 chr6 160253516 160253619 -29025935 + L2 LINE L2 3162 3271 -1 2008 199 32 25 chr6 160254063 160254505 -29025049 + MER87 LTR ERV1 1 445 -96 4552 60 7 8 chr6 160254505 160255535 -29024019 - MER11A LTR ERVK 0 1266 1 534 162 20 0 chr6 160255535 160255634 -29023920 + MER87 LTR ERV1 441 541 0 1057 162 34 10 chr6 160256173 160256377 -29023177 - MER58A DNA MER1_type -15 209 1 182 335 113 67 chr6 160256464 160256703 -29022851 + L2 LINE L2 3018 3267 -5 185 196 20 0 chr6 160256749 160256800 -29022754 + GA-rich Low_complexity Low_complexity 2 53 0 189 0 0 0 chr6 160258568 160258589 -29020965 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 682 295 31 47 chr6 160259003 160259261 -29020293 - MIR SINE MIR -2 260 7 1677 217 47 38 chr6 160259311 160259860 -29019694 + MER34B LTR ERV1 10 563 -2 2533 84 121 12 chr6 160259871 160260275 -29019279 - LTR7 LTR ERV1 -2 448 1 2170 101 50 13 chr6 160260275 160260651 -29018903 - HERVH LTR ERV1 0 7713 7324 1272 134 18 5 chr6 160260651 160260868 -29018686 - HERVH LTR ERV1 -1894 5819 5600 4269 130 0 1 chr6 160260869 160261532 -29018022 - HERVH LTR ERV1 -2564 5149 4488 3089 116 6 6 chr6 160261534 160262036 -29017518 - HERVH LTR ERV1 -3720 3993 3492 804 155 20 0 chr6 160262026 160262174 -29017380 - HERVH LTR ERV1 -4423 3290 3140 * 19149 95 19 14 chr6 160262168 160265142 -29014412 - HERVH LTR ERV1 -4726 2987 1 2659 75 123 0 chr6 160265144 160265543 -29014011 - LTR7 LTR ERV1 -2 448 1 271 373 27 0 chr6 160265592 160265702 -29013852 - MIR SINE MIR -95 167 55 23 0 0 0 chr6 160265716 160265739 -29013815 + AT_rich Low_complexity Low_complexity 1 23 0 1822 93 0 0 chr6 160265743 160265969 -29013585 - AluSc SINE Alu -83 226 1 261 0 0 0 chr6 160267341 160267370 -29012184 + (TTG)n Simple_repeat Simple_repeat 3 31 0 297 326 41 20 chr6 160267437 160267584 -29011970 + MIR SINE MIR 1 150 -112 882 167 0 7 chr6 160267594 160267744 -29011810 - MLT1A1 LTR MaLR -2 363 215 257 225 45 54 chr6 160267940 160268051 -29011503 + MLT1K LTR MaLR 470 579 -9 4441 58 14 0 chr6 160268075 160268658 -29010896 + LTR10C LTR ERV1 1 591 0 1207 296 73 37 chr6 160268683 160269487 -29010067 + L2 LINE L2 2465 3298 -15 390 253 0 11 chr6 160269779 160269874 -29009680 - MIR SINE MIR -19 243 150 2078 167 0 6 chr6 160269880 160270234 -29009320 + MLT1A1 LTR MaLR 12 363 -2 240 268 52 31 chr6 160270248 160270345 -29009209 - MIR SINE MIR -128 134 36 183 80 0 0 chr6 160271201 160271226 -29008328 + (CAA)n Simple_repeat Simple_repeat 2 26 0 18418 48 5 0 chr6 160272607 160275063 -29004491 - L1P LINE L1 -2328 3818 1351 245 267 59 40 chr6 160275192 160275484 -29004070 + L1MEc LINE L1 2287 2551 -3989 446 286 35 10 chr6 160275809 160276012 -29003542 - L1ME3A LINE L1 -219 5951 5744 235 256 142 46 chr6 160276030 160276334 -29003220 - L1ME3A LINE L1 -505 5657 5317 432 289 70 34 chr6 160276529 160276886 -29002668 - L1ME3A LINE L1 -1901 4245 3876 1999 165 20 3 chr6 160276970 160277321 -29002233 - MLT1A1 LTR MaLR 0 365 9 473 294 25 40 chr6 160277643 160277844 -29001710 + L2 LINE L2 3110 3307 -6 207 0 0 0 chr6 160277947 160277970 -29001584 + (CA)n Simple_repeat Simple_repeat 2 24 0 255 61 0 0 chr6 160277970 160278003 -29001551 + (GA)n Simple_repeat Simple_repeat 1 33 0 278 71 0 24 chr6 160278053 160278095 -29001459 - MLT2A1 LTR ERVL 0 453 413 288 0 0 0 chr6 160278096 160278128 -29001426 + (TA)n Simple_repeat Simple_repeat 2 33 0 468 0 0 0 chr6 160278184 160278236 -29001318 + (TA)n Simple_repeat Simple_repeat 2 53 0 2005 91 29 16 chr6 160278236 160278544 -29001010 - MLT2A1 LTR ERVL -60 384 73 1565 257 72 18 chr6 160278544 160279097 -29000457 + L1ME3A LINE L1 5577 6159 -11 505 212 65 147 chr6 160279721 160279977 -28999577 + MER34C LTR ERV1 35 238 -347 1005 190 0 0 chr6 160279977 160280140 -28999414 - FRAM SINE Alu -2 164 2 505 212 65 147 chr6 160280140 160280346 -28999208 + MER34C LTR ERV1 238 459 -126 320 232 32 21 chr6 160280426 160280521 -28999033 + MER34 LTR ERV1 447 542 0 194 362 16 87 chr6 160280546 160280731 -28998823 - L2 LINE L2 -78 3194 3023 190 261 148 34 chr6 160281144 160281232 -28998322 - L2 LINE L2 -5 3308 3211 4849 140 40 3 chr6 160281300 160282055 -28997499 + LTR39 LTR ERV1 1 783 0 204 40 0 0 chr6 160283304 160283329 -28996225 + (CA)n Simple_repeat Simple_repeat 2 26 0 180 208 0 62 chr6 160285372 160285420 -28994134 - MER5A DNA MER1_type -43 146 102 2629 86 11 0 chr6 160287429 160287778 -28991776 - THE1A LTR MaLR -2 353 1 24 0 0 0 chr6 160287836 160287860 -28991694 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr6 160288509 160288533 -28991021 + (TG)n Simple_repeat Simple_repeat 2 25 0 2058 103 0 0 chr6 160289358 160289639 -28989915 + THE1B LTR MaLR 84 364 0 5810 157 13 10 chr6 160289639 160291325 -28988229 - L1P4 LINE L1 -371 5792 4103 254 259 54 48 chr6 160291960 160292107 -28987447 - L1MC4a LINE L1 -1845 5963 5816 676 248 39 134 chr6 160292617 160293207 -28986347 - L1MC4a LINE L1 -2019 5789 5256 319 306 51 38 chr6 160293226 160293461 -28986093 - L1MC4a LINE L1 -916 5230 4993 234 308 121 0 chr6 160294373 160294464 -28985090 - L3b LINE CR1 -263 1320 1219 458 302 55 44 chr6 160294876 160295058 -28984496 - MIR3 SINE MIR 0 208 25 28 29 0 0 chr6 160295227 160295262 -28984292 + AT_rich Low_complexity Low_complexity 1 35 0 5208 66 3 0 chr6 160295262 160295933 -28983621 - L1PA5 LINE L1 -3 6151 5479 2419 58 0 0 chr6 160295933 160296356 -28983198 + L1PA5 LINE L1 5052 5474 -680 266 253 139 0 chr6 160299417 160299496 -28980058 + MIR SINE MIR 47 136 -126 2050 149 0 10 chr6 160299513 160299821 -28979733 - AluSx SINE Alu -7 305 1 733 178 168 37 chr6 160300403 160300617 -28978937 + MLT1H LTR MaLR 2 243 -306 264 261 43 0 chr6 160300762 160300854 -28978700 + MLT1H LTR MaLR 450 545 -4 388 217 108 23 chr6 160301502 160301631 -28977923 - Charlie8 DNA MER1_type -2141 276 137 195 311 118 7 chr6 160302413 160302548 -28977006 - L2 LINE L2 -6 3307 3158 947 356 77 34 chr6 160302725 160302809 -28976745 + L2 LINE L2 87 166 -3148 1442 151 4 17 chr6 160302809 160303048 -28976506 + MER46A DNA MER2_type 1 236 0 947 356 77 34 chr6 160303048 160303389 -28976165 + L2 LINE L2 166 491 -2823 182 37 37 0 chr6 160303389 160303416 -28976138 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 947 356 77 34 chr6 160303416 160303753 -28975801 + L2 LINE L2 491 883 -2431 768 213 48 34 chr6 160303803 160304143 -28975411 + LTR35 LTR ERV1 186 618 0 419 279 26 75 chr6 160304512 160304777 -28974777 - L1ME3A LINE L1 -214 6025 5774 703 107 25 8 chr6 160304841 160304963 -28974591 + LTR23 LTR ERV1 1 124 -313 591 314 84 9 chr6 160305232 160305757 -28973797 - L1ME3A LINE L1 -2497 3718 3155 386 303 37 20 chr6 160305788 160306032 -28973522 - L1ME3A LINE L1 -3147 3068 2821 546 361 80 13 chr6 160306050 160306363 -28973191 + L2 LINE L2 1986 2319 -995 462 245 32 14 chr6 160356492 160356602 -28922952 + L1ME LINE L1 5416 5523 -647 2504 69 7 0 chr6 160356602 160356907 -28922647 + AluY SINE Alu 1 307 -4 462 245 32 14 chr6 160356907 160357057 -28922497 + L1ME LINE L1 5523 5714 -456 * 1062 314 63 5 chr6 160357053 160357467 -28922087 - L1ME3A LINE L1 -5894 502 65 468 202 0 37 chr6 160357475 160357584 -28921970 + Charlie1 DNA MER1_type 1780 1884 -877 2674 203 55 68 chr6 160358181 160359072 -28920482 - Charlie1 DNA MER1_type 0 2761 1883 5093 152 3 19 chr6 160359179 160360383 -28919171 - L1PA14 LINE L1 -81 6080 4895 1816 181 20 9 chr6 160360383 160360732 -28918822 - THE1A LTR MaLR 0 355 3 8153 93 7 2 chr6 160360739 160361834 -28917720 - THE1A-int LTR MaLR -6 1574 474 1366 101 26 0 chr6 160361834 160362023 -28917531 - AluSq SINE Alu -119 194 1 2866 76 13 0 chr6 160362300 160362681 -28916873 - THE1A-int LTR MaLR -1193 387 2 * 6022 192 34 23 chr6 160362665 160362682 -28916872 - L1PA14 LINE L1 -1224 4922 4907 1730 181 57 28 chr6 160362682 160363036 -28916518 - THE1B LTR MaLR 0 364 1 6022 192 34 23 chr6 160363036 160363232 -28916322 - L1PA14 LINE L1 -1239 4907 4715 2177 92 0 36 chr6 160363232 160363537 -28916017 - AluY SINE Alu -17 294 1 6022 192 34 23 chr6 160363537 160364049 -28915505 - L1PA14 LINE L1 -1431 4715 4210 2069 134 24 46 chr6 160364049 160364421 -28915133 + THE1B LTR MaLR 1 364 0 6022 192 34 23 chr6 160364421 160365000 -28914554 - L1PA14 LINE L1 -1936 4210 3601 378 229 9 18 chr6 160364999 160365108 -28914446 - L1M4 LINE L1 -5353 1189 1082 * 1101 206 9 14 chr6 160365210 160365424 -28914130 - L1M4 LINE L1 -5725 817 605 1231 272 75 37 chr6 160365439 160365921 -28913633 - L1M4 LINE L1 -6038 504 5 835 306 83 34 chr6 160365964 160366493 -28913061 + MLT1H1 LTR MaLR 1 555 0 343 252 129 7 chr6 160367106 160367253 -28912301 + L2 LINE L2 3149 3313 0 241 310 155 17 chr6 160368552 160368668 -28910886 + MIR SINE MIR 122 253 -9 22 0 0 0 chr6 160368881 160368903 -28910651 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 160370173 160370195 -28909359 + AT_rich Low_complexity Low_complexity 1 22 0 7016 91 10 34 chr6 160370196 160371321 -28908233 - L1MA1 LINE L1 -8 6294 5197 264 286 34 17 chr6 160371313 160371491 -28908063 - L1P4 LINE L1 -722 5444 5264 * 398 36 18 0 chr6 160373079 160373135 -28906419 + (CA)n Simple_repeat Simple_repeat 2 58 0 894 190 81 0 chr6 160373857 160374031 -28905523 + MER5A DNA MER1_type 1 188 -1 603 330 74 22 chr6 160375311 160375623 -28903931 + LTR33 LTR ERVL 11 338 -183 906 132 37 0 chr6 160375783 160375919 -28903635 - MLT1A1 LTR MaLR 0 365 225 1491 96 0 145 chr6 160376235 160376538 -28903016 + AluY SINE Alu 39 297 -14 22 56 0 0 chr6 160377068 160377104 -28902450 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 160377215 160377236 -28902318 + AT_rich Low_complexity Low_complexity 1 21 0 351 301 0 11 chr6 160378471 160378564 -28900990 + L1MEd LINE L1 443 534 -5585 508 308 22 4 chr6 160378565 160378792 -28900762 + L1MEd LINE L1 2624 2854 -3275 264 273 0 0 chr6 160378807 160378906 -28900648 + (TA)n Simple_repeat Simple_repeat 2 100 0 22 80 0 0 chr6 160379045 160379095 -28900459 + AT_rich Low_complexity Low_complexity 1 50 0 2280 95 3 0 chr6 160379195 160379489 -28900065 - AluSx SINE Alu -16 296 2 218 200 22 0 chr6 160380143 160380188 -28899366 + L2 LINE L2 3267 3312 -1 271 254 0 0 chr6 160380255 160380318 -28899236 + GA-rich Low_complexity Low_complexity 2 64 0 510 310 75 6 chr6 160380854 160381028 -28898526 - MIR SINE MIR -18 244 59 1907 141 47 0 chr6 160381046 160381345 -28898209 + AluSq SINE Alu 1 313 0 234 222 86 77 chr6 160381499 160381616 -28897938 - MIR3 SINE MIR -86 122 5 967 163 114 5 chr6 160382883 160383085 -28896469 - MER31B LTR ERV1 0 466 243 443 216 23 0 chr6 160383079 160383167 -28896387 - MER31B LTR ERV1 -376 90 1 * 23 54 0 0 chr6 160383391 160383428 -28896126 + AT_rich Low_complexity Low_complexity 1 37 0 210 136 0 0 chr6 160383668 160383712 -28895842 + (CTATA)n Simple_repeat Simple_repeat 3 46 0 385 314 83 6 chr6 160383836 160383992 -28895562 - MIR3 SINE MIR -3 205 38 203 304 51 13 chr6 160384299 160384378 -28895176 + MIR SINE MIR 68 149 -113 204 97 0 0 chr6 160384557 160384588 -28894966 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 585 234 8 0 chr6 160385922 160386046 -28893508 + MIR SINE MIR 6 130 -132 27 49 0 0 chr6 160386968 160387009 -28892545 + AT_rich Low_complexity Low_complexity 1 41 0 252 211 0 0 chr6 160387131 160387207 -28892347 + T-rich Low_complexity Low_complexity 1 76 0 948 170 13 0 chr6 160387209 160387368 -28892186 - U1 snRNA snRNA -4 161 1 419 333 122 30 chr6 160387442 160387811 -28891743 - L1MC4a LINE L1 -1845 5963 5561 1204 152 41 37 chr6 160387822 160388065 -28891489 + THE1C LTR MaLR 1 244 -131 * 1730 144 72 10 chr6 160388062 160388368 -28891186 + THE1C LTR MaLR 51 375 0 244 316 26 26 chr6 160388400 160388555 -28890999 - L1MC4a LINE L1 -643 5521 5367 323 245 82 27 chr6 160388602 160388749 -28890805 - L1MC4a LINE L1 -870 5276 5122 6930 44 7 0 chr6 160388806 160389688 -28889866 - L1P LINE L1 -4359 1787 900 7633 25 0 0 chr6 160389711 160391148 -28888406 + L1PA3 LINE L1 4746 6178 0 252 300 19 25 chr6 160391157 160391317 -28888237 - L1MC4a LINE L1 -1101 5045 4887 652 294 27 8 chr6 160391522 160391890 -28887664 - L1MC4a LINE L1 -1450 4696 4322 1708 201 9 24 chr6 160392541 160392963 -28886591 + L1 LINE L1 4932 5347 -799 495 196 0 11 chr6 160392963 160393055 -28886499 - MSTA LTR MaLR 0 428 338 21 0 0 0 chr6 160393657 160393678 -28885876 + AT_rich Low_complexity Low_complexity 1 21 0 1232 203 126 95 chr6 160393761 160394278 -28885276 - MLT1F LTR MaLR -8 646 1 2084 109 14 3 chr6 160396120 160396414 -28883140 + AluSg SINE Alu 3 299 -11 231 292 15 0 chr6 160397869 160397934 -28881620 - L3 LINE CR1 -193 1384 1319 262 262 78 78 chr6 160402776 160402917 -28876637 + MLT1K LTR MaLR 37 177 -411 215 224 52 35 chr6 160403164 160403222 -28876332 + MIR SINE MIR 19 77 -131 183 327 0 0 chr6 160403489 160403544 -28876010 + MIR3 SINE MIR 151 205 -3 30 59 0 0 chr6 160404094 160404145 -28875409 + AT_rich Low_complexity Low_complexity 1 51 0 1028 190 134 86 chr6 160404870 160405160 -28874394 - MSTD LTR MaLR 0 396 93 373 281 76 27 chr6 160405702 160405887 -28873667 + L1MDa LINE L1 2364 2557 -3983 201 121 0 0 chr6 160406229 160406262 -28873292 + (TA)n Simple_repeat Simple_repeat 1 33 0 288 206 23 8 chr6 160406280 160406540 -28873014 + (TA)n Simple_repeat Simple_repeat 1 264 0 209 266 18 9 chr6 160408744 160408767 -28870787 + (TA)n Simple_repeat Simple_repeat 1 22 -88 2125 159 5 22 chr6 160408767 160409137 -28870417 + MLT1A1 LTR MaLR 1 364 -1 209 266 18 9 chr6 160409137 160409222 -28870332 + (TA)n Simple_repeat Simple_repeat 22 110 0 310 85 34 17 chr6 160409299 160409358 -28870196 + CT-rich Low_complexity Low_complexity 2 61 0 1938 131 10 3 chr6 160409366 160409657 -28869897 - AluSx SINE Alu -19 293 1 186 43 0 0 chr6 160409814 160409837 -28869717 + (A)n Simple_repeat Simple_repeat 1 23 0 34 0 0 0 chr6 160410910 160410944 -28868610 + AT_rich Low_complexity Low_complexity 1 34 0 647 284 78 24 chr6 160411493 160411884 -28867670 - L2 LINE L2 -301 3012 2589 388 309 71 13 chr6 160411893 160412248 -28867306 - L1MDa LINE L1 -3712 2828 2455 23 33 0 0 chr6 160412403 160412433 -28867121 + AT_rich Low_complexity Low_complexity 1 30 0 298 346 69 25 chr6 160413480 160413639 -28865915 + L2 LINE L2 3142 3307 -6 2127 114 17 0 chr6 160414097 160414396 -28865158 + AluSq SINE Alu 1 304 -9 2326 83 0 3 chr6 160414500 160414801 -28864753 + AluSx SINE Alu 1 300 -12 24 0 0 0 chr6 160415074 160415098 -28864456 + AT_rich Low_complexity Low_complexity 1 24 0 11034 146 34 19 chr6 160415581 160417506 -28862048 - Tigger1 DNA MER2_type -1 2417 464 247 226 65 74 chr6 160417518 160417735 -28861819 - L1MEc LINE L1 -4121 2704 2490 742 229 99 5 chr6 160417802 160417994 -28861560 - MER6B DNA MER2_type 0 210 1 487 273 67 22 chr6 160418155 160418422 -28861132 - L1MEc LINE L1 -4682 2143 1865 637 210 0 22 chr6 160418431 160418569 -28860985 - AluJb SINE Alu 0 312 178 393 106 2 30 chr6 160418604 160418676 -28860878 + MSTA LTR MaLR 150 221 -211 839 199 42 11 chr6 160418792 160418983 -28860571 - L1MB7 LINE L1 -16 6168 5972 1747 169 111 3 chr6 160418983 160419315 -28860239 + MSTA LTR MaLR 1 368 -60 207 0 0 0 chr6 160419592 160419615 -28859939 + (TA)n Simple_repeat Simple_repeat 2 24 0 27 62 0 0 chr6 160419661 160419709 -28859845 + AT_rich Low_complexity Low_complexity 1 48 0 30 0 0 0 chr6 160419754 160419784 -28859770 + AT_rich Low_complexity Low_complexity 1 30 0 423 127 0 28 chr6 160419800 160419871 -28859683 + MSTA LTR MaLR 360 428 0 2660 203 22 20 chr6 160419886 160419982 -28859572 - L1MB7 LINE L1 -242 5942 5848 1705 177 68 3 chr6 160419982 160420333 -28859221 - L1MC1 LINE L1 -7 6326 5953 2660 203 22 20 chr6 160420333 160420872 -28858682 - L1MB7 LINE L1 -336 5848 5306 875 196 47 29 chr6 160420866 160421142 -28858412 - L1MEc LINE L1 -5059 1483 1203 * 1882 139 137 34 chr6 160421218 160421606 -28857948 + MSTA LTR MaLR 1 428 0 1012 165 6 6 chr6 160422072 160422236 -28857318 - THE1C LTR MaLR -211 164 1 6076 125 10 4 chr6 160422236 160423193 -28856361 + L1MA3 LINE L1 5343 6305 0 393 300 49 33 chr6 160423224 160423531 -28856023 - L1ME3A LINE L1 -236 5917 5606 339 302 16 8 chr6 160423559 160423685 -28855869 - L1ME3A LINE L1 -2111 4018 3892 265 304 13 0 chr6 160423711 160423790 -28855764 - MLT1H LTR MaLR -16 533 454 280 320 44 28 chr6 160424003 160424184 -28855370 - L1ME3A LINE L1 -2596 3533 3350 12685 182 37 34 chr6 160424191 160427048 -28852506 + L1M1 LINE L1 15 2864 -4701 2141 117 0 0 chr6 160427048 160427331 -28852223 + AluSx SINE Alu 7 289 -23 12685 182 37 34 chr6 160427331 160427345 -28852209 + L1M1 LINE L1 2864 2876 -4689 6975 55 10 0 chr6 160427345 160428486 -28851068 + L1PA7 LINE L1 5002 6154 0 12685 182 37 34 chr6 160428486 160431464 -28848090 + L1M1 LINE L1 2876 6233 -1332 298 269 24 24 chr6 160431494 160431661 -28847893 - L1ME3A LINE L1 -3115 3014 2848 3959 177 60 15 chr6 160432073 160432133 -28847421 - L1MB4 LINE L1 0 6180 6124 347 97 0 16 chr6 160432133 160432195 -28847359 + (TA)n Simple_repeat Simple_repeat 1 61 0 3959 177 60 15 chr6 160432195 160432993 -28846561 - L1MB4 LINE L1 -56 6124 5283 1233 148 150 39 chr6 160433001 160433336 -28846218 - MSTA LTR MaLR -15 413 1 631 228 12 18 chr6 160433336 160433503 -28846051 - L1MB4 LINE L1 -858 5288 5123 406 296 107 7 chr6 160433570 160433861 -28845693 - L1ME3A LINE L1 -5198 921 602 241 295 13 70 chr6 160434093 160434249 -28845305 - L1ME3A LINE L1 -5971 148 2 1216 182 13 13 chr6 160434411 160434636 -28844918 + MLT1F LTR MaLR 318 542 0 22 0 0 0 chr6 160435987 160436009 -28843545 + AT_rich Low_complexity Low_complexity 1 22 0 399 233 55 48 chr6 160437108 160437254 -28842300 + MER69A DNA AcHobo 31 177 0 188 316 124 36 chr6 160437373 160437598 -28841956 + MIR SINE MIR 12 256 -6 404 282 148 20 chr6 160437598 160437747 -28841807 - L3 LINE CR1 -4 1573 1406 212 0 36 0 chr6 160437853 160437881 -28841673 + (TA)n Simple_repeat Simple_repeat 1 29 0 193 300 100 0 chr6 160438064 160438174 -28841380 - L2 LINE L2 -1235 2079 1959 2240 129 34 28 chr6 160438557 160438914 -28840640 - THE1B LTR MaLR 0 364 6 1380 230 52 41 chr6 160439187 160439679 -28839875 - L1MA9 LINE L1 -38 6274 5775 5982 94 31 0 chr6 160439698 160441350 -28838204 - L1PA12 LINE L1 -1 6167 4482 258 56 0 0 chr6 160441350 160441386 -28838168 + (TG)n Simple_repeat Simple_repeat 1 36 0 252 0 0 0 chr6 160441385 160441413 -28838141 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 21 36 0 0 chr6 160441594 160441622 -28837932 + AT_rich Low_complexity Low_complexity 1 28 0 339 257 14 79 chr6 160444139 160444279 -28835275 - LTR28 LTR ERV1 -53 967 837 759 226 21 63 chr6 160444323 160444607 -28834947 - LTR1 LTR ERV1 -561 224 1 2075 182 84 108 chr6 160445103 160445879 -28833675 - LTR1B LTR ERV1 -69 757 1 15572 208 23 27 chr6 160446050 160448454 -28831100 - L1PA12 LINE L1 -1662 5922 3509 2094 124 3 0 chr6 160448454 160448737 -28830817 - AluSg SINE Alu -26 284 1 15572 208 23 27 chr6 160448737 160449591 -28829963 - L1PA12 LINE L1 -4075 3509 2653 1984 23 0 0 chr6 160449591 160449810 -28829744 - AluYb8 SINE Alu -10 308 90 15572 208 23 27 chr6 160449810 160451690 -28827864 - L1PA12 LINE L1 -4931 2653 1 366 213 0 0 chr6 160451690 160451765 -28827789 - L1MA9 LINE L1 -509 5782 5708 389 354 63 68 chr6 160451769 160452213 -28827341 + L2 LINE L2 2520 2961 -353 346 230 71 53 chr6 160452371 160452484 -28827070 + L2 LINE L2 3183 3297 -16 224 224 93 56 chr6 160453905 160453955 -28825599 - MIR SINE MIR 0 262 215 207 0 0 0 chr6 160453955 160453978 -28825576 + (GGAGA)n Simple_repeat Simple_repeat 1 23 0 224 224 93 56 chr6 160453978 160454034 -28825520 - MIR SINE MIR -47 215 152 402 315 14 21 chr6 160454754 160454897 -28824657 - MIR SINE MIR -106 156 15 21 0 0 0 chr6 160455965 160455986 -28823568 + AT_rich Low_complexity Low_complexity 1 21 0 10850 22 0 0 chr6 160456085 160458120 -28821434 + L1PA2 LINE L1 4120 6154 -1 885 207 132 51 chr6 160458120 160458243 -28821311 - L1MC4 LINE L1 -2 8040 7928 210 37 0 0 chr6 160458243 160458270 -28821284 + (CA)n Simple_repeat Simple_repeat 2 28 0 885 207 132 51 chr6 160458270 160458480 -28821074 - L1MC4 LINE L1 -114 7928 7680 306 284 82 47 chr6 160459102 160459503 -28820051 + L1ME4a LINE L1 5506 5920 -201 259 204 20 0 chr6 160459880 160459929 -28819625 - AluJ/monomer SINE Alu -252 50 1 3075 233 51 25 chr6 160460072 160460819 -28818735 + L1P5 LINE L1 1 766 -6083 12794 228 22 23 chr6 160461215 160465295 -28814259 + L1P5 LINE L1 1474 5538 -1321 2400 92 3 0 chr6 160465295 160465601 -28813953 + AluSg1 SINE Alu 1 307 -2 12794 228 22 23 chr6 160465601 160466438 -28813116 + L1P5 LINE L1 5538 6375 -484 483 305 127 26 chr6 160466711 160467019 -28812535 - MLT1I LTR MaLR 0 409 71 1226 303 68 89 chr6 160467065 160467482 -28812072 + ERVL LTR ERVL 821 1245 -4519 812 215 77 34 chr6 160467482 160467691 -28811863 + MER20 DNA MER1_type 1 218 -1 1226 303 68 89 chr6 160467691 160468240 -28811314 + ERVL LTR ERVL 1245 1757 -4007 1763 206 14 16 chr6 160468240 160468604 -28810950 - MLT1A1 LTR MaLR -2 363 1 1226 303 68 89 chr6 160468604 160468920 -28810634 + ERVL LTR ERVL 1757 2078 -3686 636 254 80 19 chr6 160468928 160469139 -28810415 + ERVL LTR ERVL 2238 2503 -2633 3431 141 31 7 chr6 160469633 160470220 -28809334 + L1MB1 LINE L1 5568 6168 0 255 31 0 0 chr6 160471458 160471490 -28808064 + (A)n Simple_repeat Simple_repeat 1 32 0 268 268 235 7 chr6 160472673 160472826 -28806728 - MIR SINE MIR -70 192 5 181 318 148 46 chr6 160473567 160473784 -28805770 - L2 LINE L2 -134 3179 2941 2440 286 68 39 chr6 160473791 160474725 -28804829 - L2 LINE L2 -1579 1735 774 2396 72 0 0 chr6 160474821 160475114 -28804440 - AluY SINE Alu -18 293 1 410 370 64 24 chr6 160475179 160475509 -28804045 + L2 LINE L2 2303 2645 -669 323 347 38 94 chr6 160475689 160476084 -28803470 + L2 LINE L2 2898 3270 -2 2524 168 18 9 chr6 160476183 160476629 -28802925 + Tigger1 DNA MER2_type 25 474 -1944 11707 209 26 13 chr6 160476640 160478078 -28801476 - L1PA16 LINE L1 -9 6860 5442 387 0 0 0 chr6 160478078 160478121 -28801433 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 11707 209 26 13 chr6 160478121 160480606 -28798948 - L1PA16 LINE L1 -1427 5442 2892 11480 149 22 9 chr6 160480606 160482569 -28796985 + Tigger1 DNA MER2_type 430 2418 0 496 300 27 31 chr6 160483332 160483530 -28796024 + MIR SINE MIR 16 210 -52 367 231 25 50 chr6 160483772 160483893 -28795661 + L2 LINE L2 1659 1776 -1538 788 202 0 12 chr6 160483916 160484166 -28795388 + LTR22 LTR ERVK 1 345 -164 3809 113 18 2 chr6 160484166 160484714 -28794840 + HERVKC4 LTR ERVK 4523 5079 -1758 1978 157 2 5 chr6 160484684 160485098 -28794456 + HERVKC4 LTR ERVK 3172 6837 0 * 2456 190 22 14 chr6 160485098 160485599 -28793955 + LTR22 LTR ERVK 1 505 -4 1338 325 87 31 chr6 160485665 160486847 -28792707 + L2 LINE L2 2044 3312 -1 24 32 0 0 chr6 160486884 160486915 -28792639 + AT_rich Low_complexity Low_complexity 1 31 0 532 211 130 37 chr6 160488212 160488373 -28791181 - MER5B DNA MER1_type 0 178 3 306 0 0 0 chr6 160489110 160489144 -28790410 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 2122 131 0 3 chr6 160489146 160489459 -28790095 - AluSx SINE Alu 0 312 1 3326 155 9 5 chr6 160489623 160490179 -28789375 - MER89 LTR ERV1 0 559 2 5153 65 0 3 chr6 160490447 160491113 -28788441 - L1PA8 LINE L1 0 6172 5509 235 298 160 8 chr6 160491655 160491786 -28787768 - MIR SINE MIR -48 214 64 2431 201 42 15 chr6 160492576 160493119 -28786435 + MER74A LTR ERVL 1 558 0 297 0 0 0 chr6 160494040 160494073 -28785481 + (TG)n Simple_repeat Simple_repeat 2 34 0 370 241 14 0 chr6 160494079 160494224 -28785330 + (TA)n Simple_repeat Simple_repeat 1 147 0 221 309 12 37 chr6 160494463 160494544 -28785010 + L2 LINE L2 3193 3271 -1 2085 118 0 23 chr6 160495601 160495928 -28783626 - AluSp SINE Alu 0 313 1 486 316 8 8 chr6 160496297 160496430 -28783124 - MIR SINE MIR -57 151 19 401 262 143 37 chr6 160498062 160498361 -28781193 - MLT1I LTR MaLR -49 360 63 333 329 144 33 chr6 160498460 160498856 -28780698 + L2 LINE L2 2686 3164 -149 2957 174 11 44 chr6 160498856 160499429 -28780125 - MLT2B3 LTR ERVL 0 554 1 333 329 144 33 chr6 160499429 160499597 -28779957 + L2 LINE L2 3164 3312 -1 307 297 203 0 chr6 160499733 160499861 -28779693 + MIR SINE MIR 20 173 -89 282 306 74 0 chr6 160502927 160503035 -28776519 + MER39 LTR ERV1 5 120 -587 * 423 228 40 63 chr6 160503005 160503177 -28776377 + LTR48 LTR ERV1 128 293 -351 * 546 223 103 80 chr6 160503171 160503395 -28776159 + LTR48B LTR ERV1 402 630 -14 1549 213 54 40 chr6 160503439 160503867 -28775687 + Tigger2a DNA MER2_type 1 434 0 428 316 41 50 chr6 160504340 160504558 -28774996 + L1MEd LINE L1 411 626 -5493 418 281 99 31 chr6 160504938 160505475 -28774079 + L1MEd LINE L1 1059 1669 -4641 1840 144 61 25 chr6 160505833 160506195 -28773359 + THE1C LTR MaLR 1 375 0 504 289 23 12 chr6 160506343 160506516 -28773038 - MER117 DNA MER1_type -20 177 3 307 75 54 32 chr6 160506656 160506749 -28772805 + (TA)n Simple_repeat Simple_repeat 2 96 0 348 343 146 0 chr6 160506941 160507078 -28772476 - L2 LINE L2 -12 3260 3104 227 162 0 0 chr6 160507204 160507241 -28772313 - MLT2D LTR ERVL 0 464 428 709 79 18 0 chr6 160507242 160507356 -28772198 + (TAGA)n Simple_repeat Simple_repeat 2 117 0 847 203 159 52 chr6 160507373 160507663 -28771891 - MSTD LTR MaLR 0 396 54 979 198 72 5 chr6 160507677 160507954 -28771600 - MLT2D LTR ERVL -72 342 1 287 263 71 0 chr6 160507956 160508055 -28771499 + MIR SINE MIR 119 224 -38 263 253 25 13 chr6 160508278 160508357 -28771197 + MER116 DNA Mariner 1 80 0 957 119 14 0 chr6 160510127 160510270 -28769284 + L1PB4 LINE L1 6010 6154 -2 2975 114 26 79 chr6 160510461 160511066 -28768488 - L1MA8 LINE L1 0 6291 5719 284 167 0 0 chr6 160511066 160511108 -28768446 - THE1B LTR MaLR -205 159 118 776 136 0 8 chr6 160511110 160511228 -28768326 + THE1B LTR MaLR 248 364 0 1713 166 92 0 chr6 160511230 160511603 -28767951 - L1MA8 LINE L1 -450 5721 5298 180 0 0 0 chr6 160512535 160512555 -28766999 + (T)n Simple_repeat Simple_repeat 1 20 0 453 213 142 6 chr6 160513251 160513434 -28766120 - MER58B DNA MER1_type 0 341 4 30 45 0 0 chr6 160513721 160513765 -28765789 + AT_rich Low_complexity Low_complexity 1 44 0 276 262 37 47 chr6 160513845 160513952 -28765602 - MER46C DNA MER2_type -27 311 206 * 1581 154 82 25 chr6 160513949 160514267 -28765287 + Tigger3(Golem) DNA MER2_type 2693 3028 -1 1578 67 19 0 chr6 160514710 160514919 -28764635 + L1PA8 LINE L1 5940 6152 -20 745 131 15 7 chr6 160515010 160515147 -28764407 - L1MA8 LINE L1 -61 6230 6093 21 0 0 0 chr6 160515322 160515343 -28764211 + AT_rich Low_complexity Low_complexity 1 21 0 861 219 125 34 chr6 160515816 160516167 -28763387 - LTR52 LTR ERVL -38 383 1 456 263 163 14 chr6 160516171 160516413 -28763141 - L2 LINE L2 -284 3029 2743 335 265 0 20 chr6 160516750 160516758 -28762796 + (TA)n Simple_repeat Simple_repeat 1 8 -92 1746 180 42 12 chr6 160516758 160517092 -28762462 + MER2 DNA MER2_type 1 344 0 335 265 0 20 chr6 160517092 160517185 -28762369 + (TA)n Simple_repeat Simple_repeat 8 100 0 570 244 88 83 chr6 160517185 160517582 -28761972 - MER93a LTR ERV1 -2 400 2 180 0 0 0 chr6 160518880 160518900 -28760654 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 438 341 55 16 chr6 160518988 160519170 -28760384 + MIR3 SINE MIR 7 195 -13 261 243 52 121 chr6 160520001 160520174 -28759380 - L3 LINE CR1 -103 1474 1314 356 251 93 17 chr6 160520206 160520489 -28759065 - MLT1J1 LTR MaLR -15 431 68 247 310 88 26 chr6 160521072 160521185 -28758369 - MIR SINE MIR -50 158 38 2138 103 7 10 chr6 160521185 160521485 -28758069 - AluSx SINE Alu -13 299 1 204 200 14 114 chr6 160522600 160522670 -28756884 - MIR SINE MIR -108 154 92 3422 67 5 9 chr6 160522671 160523117 -28756437 - MLT2A1 LTR ERVL 0 444 1 45110 68 4 1 chr6 160523117 160528755 -28750799 - HERVL-A1 LTR ERVL 0 5654 1 1562 121 0 0 chr6 160528792 160528998 -28750556 - AluSx SINE Alu -106 206 1 6407 187 35 19 chr6 160529381 160531524 -28748030 + L1M1 LINE L1 2858 5035 -2530 332 263 30 0 chr6 160531559 160531658 -28747896 - L1MA10 LINE L1 -13 6321 6220 1188 147 70 140 chr6 160531714 160531778 -28747776 - MLT2B3 LTR ERVL -289 265 198 2025 29 0 4 chr6 160531778 160532020 -28747534 + L1PA4 LINE L1 5907 6147 -8 1188 147 70 140 chr6 160532020 160532240 -28747314 - MLT2B3 LTR ERVL -356 198 1 1627 262 75 40 chr6 160532240 160533120 -28746434 - L1MEc LINE L1 -3686 2529 1660 5207 165 44 0 chr6 160533383 160534811 -28744743 - L1PA15 LINE L1 -7 6809 5320 267 171 40 26 chr6 160534803 160534879 -28744675 - L1 LINE L1 -2770 3376 3300 * 1591 270 6 2 chr6 160534873 160535354 -28744200 - L1PA15 LINE L1 -3067 3730 3248 * 8598 248 41 31 chr6 160535338 160537779 -28741775 - L1PA15 LINE L1 -4319 2478 1 1011 254 93 54 chr6 160537789 160538442 -28741112 - L1MEc LINE L1 -4722 1674 996 1477 234 26 6 chr6 160538492 160538838 -28740716 - L1MEc LINE L1 -5542 854 502 786 293 62 31 chr6 160538854 160539175 -28740379 - L1MEc LINE L1 -6013 383 53 180 315 15 77 chr6 160539805 160539935 -28739619 + L2 LINE L2 1886 2007 -1307 281 238 48 0 chr6 160541519 160541582 -28737972 - L2 LINE L2 -2 3311 3246 28 29 0 0 chr6 160542159 160542194 -28737360 + AT_rich Low_complexity Low_complexity 1 35 0 198 103 0 0 chr6 160542751 160542780 -28736774 + (A)n Simple_repeat Simple_repeat 1 29 0 3782 245 69 23 chr6 160542808 160544871 -28734683 + L1MCb LINE L1 48 2403 -4342 5461 66 44 1 chr6 160544876 160545606 -28733948 - L1PA3 LINE L1 -3 6152 5392 3972 255 39 36 chr6 160545597 160547481 -28732073 + L1MCb LINE L1 2379 4223 -2341 * 261 277 42 54 chr6 160547482 160547648 -28731906 - L1ME LINE L1 -422 5699 5536 637 309 49 0 chr6 160548962 160549166 -28730388 - MIR SINE MIR -27 235 22 191 306 0 0 chr6 160550715 160550764 -28728790 + MIR SINE MIR 78 126 -136 2011 149 72 29 chr6 160551160 160551509 -28728045 - THE1B LTR MaLR 0 364 1 11823 87 6 0 chr6 160551509 160553075 -28726479 - THE1B-int LTR MaLR 0 1580 5 2206 111 71 31 chr6 160553100 160553450 -28726104 - THE1B LTR MaLR 0 364 1 14089 146 18 29 chr6 160553570 160556014 -28723540 + Tigger1 DNA MER2_type 1 2418 0 337 295 81 101 chr6 160557571 160557869 -28721685 + L3 LINE CR1 847 1138 -439 929 306 42 31 chr6 160558054 160558342 -28721212 + L3 LINE CR1 1191 1485 -92 2435 71 0 0 chr6 160558342 160558638 -28720916 - AluSg1 SINE Alu -13 296 1 929 306 42 31 chr6 160558638 160558709 -28720845 + L3 LINE CR1 1485 1554 -23 1170 145 45 116 chr6 160560239 160560550 -28719004 - MER44D DNA MER2_type -50 559 1 1157 258 42 12 chr6 160561361 160561691 -28717863 - MER93a LTR ERV1 0 402 63 54 49 0 0 chr6 160562094 160562176 -28717378 + AT_rich Low_complexity Low_complexity 1 82 0 21 71 0 0 chr6 160562893 160562935 -28716619 + AT_rich Low_complexity Low_complexity 1 42 0 286 301 113 42 chr6 160565091 160565304 -28714250 - L2 LINE L2 -1 3312 3085 3262 229 92 25 chr6 160565714 160566864 -28712690 + MER69B DNA AcHobo 1 1225 -1 338 317 30 0 chr6 160566864 160566963 -28712591 - LTR67 LTR ERVL -373 184 83 223 175 0 48 chr6 160567335 160567398 -28712156 + A-rich Low_complexity Low_complexity 3 62 0 834 201 29 114 chr6 160567477 160567785 -28711769 - LTR41 LTR ERVL -7 766 485 614 191 151 0 chr6 160567969 160568121 -28711433 - LTR41 LTR ERVL -598 175 1 555 317 53 48 chr6 160568464 160568858 -28710696 + L1M4 LINE L1 4134 4529 -1617 1521 252 132 55 chr6 160568968 160569456 -28710098 + HAL1 LINE L1 797 1246 -1261 6208 101 9 0 chr6 160569456 160571106 -28708448 + L1PA14 LINE L1 4535 6159 -2 1521 252 132 55 chr6 160571106 160571489 -28708065 + HAL1 LINE L1 1246 1598 -909 2930 6 0 0 chr6 160571489 160571805 -28707749 + AluYb8 SINE Alu 1 316 -2 1521 252 132 55 chr6 160571805 160572143 -28707411 + HAL1 LINE L1 1598 2101 -406 262 289 0 0 chr6 160572305 160572381 -28707173 + HAL1 LINE L1 2323 2398 -109 241 269 87 60 chr6 160572725 160572874 -28706680 + L1 LINE L1 4015 4167 -1979 1473 101 0 0 chr6 160573279 160573478 -28706076 + THE1C LTR MaLR 177 375 0 524 335 151 23 chr6 160573480 160573997 -28705557 - L2 LINE L2 -520 2794 2212 2031 131 0 59 chr6 160574810 160575168 -28704386 - MER1B DNA MER1_type 0 337 1 5501 162 33 11 chr6 160575507 160576811 -28702743 - L1MA9 LINE L1 0 6312 4980 21 0 0 0 chr6 160576830 160576851 -28702703 + AT_rich Low_complexity Low_complexity 1 21 0 413 223 41 8 chr6 160576974 160577095 -28702459 - L1ME LINE L1 -5861 209 85 2481 198 7 4 chr6 160577096 160577555 -28701999 + MLT1C LTR MaLR 1 460 -7 451 310 82 6 chr6 160577643 160577801 -28701753 + MIR SINE MIR 93 262 0 1788 245 72 41 chr6 160577817 160578706 -28700848 - L2 LINE L2 -34 3279 2356 397 243 47 9 chr6 160579264 160579371 -28700183 + MIR3 SINE MIR 98 208 0 24 32 0 0 chr6 160580238 160580269 -28699285 + AT_rich Low_complexity Low_complexity 1 31 0 459 304 104 18 chr6 160580600 160580820 -28698734 + MIR SINE MIR 10 248 -14 273 337 11 22 chr6 160581315 160581407 -28698147 + MIR SINE MIR 37 127 -81 1954 140 0 7 chr6 160585026 160585318 -28694236 + AluSx SINE Alu 1 290 -22 690 230 115 22 chr6 160585437 160585663 -28693891 - MIR SINE MIR -10 252 6 352 255 19 19 chr6 160586047 160586153 -28693401 - Charlie8 DNA MER1_type -2274 143 38 279 0 0 0 chr6 160586566 160586597 -28692957 + (CA)n Simple_repeat Simple_repeat 1 31 0 601 323 54 95 chr6 160587327 160587791 -28691763 + L2 LINE L2 2827 3271 -1 22 56 0 0 chr6 160587840 160587876 -28691678 + AT_rich Low_complexity Low_complexity 1 36 0 372 268 95 6 chr6 160588456 160588635 -28690919 + L1M4 LINE L1 3751 3945 -2201 1980 107 57 7 chr6 160588955 160589236 -28690318 + AluSx SINE Alu 1 295 -17 1848 148 10 13 chr6 160589384 160589689 -28689865 + AluSx SINE Alu 6 309 -3 335 293 66 48 chr6 160589701 160589868 -28689686 + MIR SINE MIR 71 240 -22 186 262 131 9 chr6 160590063 160590170 -28689384 - L3 LINE CR1 -460 1117 998 266 360 16 24 chr6 160592061 160592186 -28687368 - MER5A DNA MER1_type 0 189 66 1934 169 31 21 chr6 160593898 160594282 -28685272 + MLT1B LTR MaLR 1 388 -2 696 314 112 42 chr6 160595160 160595918 -28683636 - L2 LINE L2 -8 3305 2448 337 221 21 42 chr6 160596696 160596791 -28682763 - MER5A DNA MER1_type -93 96 4 38 0 0 0 chr6 160597398 160597436 -28682118 + AT_rich Low_complexity Low_complexity 1 38 0 1316 205 29 14 chr6 160598061 160598339 -28681215 - AluJo SINE Alu -29 283 2 1962 128 24 10 chr6 160598343 160598633 -28680921 - AluJb SINE Alu -18 294 1 2066 103 0 69 chr6 160598892 160599212 -28680342 - AluSg SINE Alu -12 298 1 222 321 185 30 chr6 160599349 160599988 -28679566 + L2 LINE L2 2109 2846 -468 201 380 51 0 chr6 160600308 160600387 -28679167 + L2 LINE L2 3197 3279 -34 255 126 63 42 chr6 160600401 160600496 -28679058 + GA-rich Low_complexity Low_complexity 3 99 0 450 234 86 69 chr6 160601311 160601486 -28678068 + MER5B DNA MER1_type 1 178 0 323 299 60 15 chr6 160601756 160601890 -28677664 + MIR3 SINE MIR 50 189 -19 778 266 80 8 chr6 160601925 160602162 -28677392 + MIR SINE MIR 7 260 -2 1144 220 23 0 chr6 160602395 160602613 -28676941 + MER58A DNA MER1_type 2 224 0 2240 105 0 3 chr6 160603007 160603302 -28676252 + AluSx SINE Alu 3 296 -16 216 336 140 0 chr6 160603376 160603483 -28676071 - MIR SINE MIR -92 170 49 606 233 131 15 chr6 160605225 160605431 -28674123 - L1ME3A LINE L1 -6 6164 5935 1709 126 45 98 chr6 160605854 160606250 -28673304 + THE1C LTR MaLR 1 375 0 2076 159 55 33 chr6 160606276 160606673 -28672881 - MLT2D LTR ERVL -8 406 1 1526 89 49 0 chr6 160606931 160607134 -28672420 - AluSp SINE Alu -17 296 84 186 313 0 96 chr6 160607671 160607754 -28671800 + L2 LINE L2 3123 3197 -75 221 375 45 11 chr6 160608137 160608225 -28671329 - L2 LINE L2 -26 3246 3156 26 0 0 0 chr6 160608236 160608262 -28671292 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chr6 160608284 160608333 -28671221 + AT_rich Low_complexity Low_complexity 1 49 0 1794 178 18 3 chr6 160608866 160609197 -28670357 + L1M2 LINE L1 1 336 -6513 227 233 0 0 chr6 160609276 160609319 -28670235 - L2 LINE L2 -64 3249 3207 2286 108 0 3 chr6 160609819 160610125 -28669429 - AluSg SINE Alu -5 305 1 23 0 0 0 chr6 160611514 160611537 -28668017 + AT_rich Low_complexity Low_complexity 1 23 0 2118 146 14 64 chr6 160612399 160612823 -28666731 + MER57A LTR ERV1 1 403 0 22 0 0 0 chr6 160613066 160613088 -28666466 + AT_rich Low_complexity Low_complexity 1 22 0 238 348 107 0 chr6 160613144 160613256 -28666298 + L2 LINE L2 3137 3260 -12 2083 116 7 0 chr6 160613256 160613540 -28666014 + AluSx SINE Alu 1 286 -26 27 0 0 0 chr6 160613544 160613571 -28665983 + AT_rich Low_complexity Low_complexity 1 27 0 2387 145 50 50 chr6 160615184 160615661 -28663893 - MER31A LTR ERV1 -8 477 1 1953 52 4 0 chr6 160615984 160616233 -28663321 + L1PA2 LINE L1 3 252 -5894 32669 26 1 0 chr6 160616234 160620911 -28658643 + L1PA2 LINE L1 1469 6152 -3 259 295 93 25 chr6 160621337 160621485 -28658069 + MIR3 SINE MIR 11 167 -41 277 266 0 0 chr6 160621699 160621763 -28657791 + (TG)n Simple_repeat Simple_repeat 2 65 0 929 268 172 13 chr6 160622606 160622990 -28656564 + L2 LINE L2 1334 1778 -1536 28 48 0 0 chr6 160623476 160623518 -28656036 + AT_rich Low_complexity Low_complexity 1 42 0 415 302 16 16 chr6 160624285 160624411 -28655143 - MIR3 SINE MIR -46 162 37 2141 275 96 35 chr6 160625046 160626025 -28653529 + HAL1 LINE L1 95 1133 -1374 36100 93 15 11 chr6 160626044 160632158 -28647396 + L1PA6 LINE L1 11 6154 0 660 219 106 90 chr6 160632180 160632559 -28646995 + HAL1 LINE L1 1149 1533 -974 722 269 27 78 chr6 160632601 160633014 -28646540 + HAL1 LINE L1 2116 2507 0 222 37 0 0 chr6 160633096 160633123 -28646431 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7571 31 0 0 chr6 160633130 160634488 -28645066 - L1PA3 LINE L1 -3 6152 4795 351 225 54 16 chr6 160634594 160634723 -28644831 - MER94 DNA DNA 0 134 1 2467 106 8 19 chr6 160634764 160635131 -28644423 - THE1B LTR MaLR 0 364 2 282 307 229 26 chr6 160635131 160635437 -28644117 + L2 LINE L2 2945 3312 -1 381 22 0 0 chr6 160636005 160636051 -28643503 + (TG)n Simple_repeat Simple_repeat 2 47 0 218 215 46 23 chr6 160636051 160636181 -28643373 + (TA)n Simple_repeat Simple_repeat 2 134 0 332 284 128 47 chr6 160636610 160637118 -28642436 + HAL1 LINE L1 799 1347 -1160 1078 262 77 29 chr6 160637182 160637624 -28641930 + L2 LINE L2 2051 2513 -801 354 362 18 12 chr6 160637902 160638065 -28641489 + HAL1b LINE L1 748 911 -437 311 370 43 14 chr6 160638126 160638337 -28641217 + HAL1 LINE L1 2204 2420 -87 396 245 42 0 chr6 160639530 160639654 -28639900 - MIR SINE MIR -68 140 35 1998 183 6 8 chr6 160639816 160640176 -28639378 + MLT1A1 LTR MaLR 1 359 -6 184 114 318 0 chr6 160640789 160640833 -28638721 - L2 LINE L2 -1 3312 3255 * 922 395 69 7 chr6 160640829 160641535 -28638019 - L2 LINE L2 -517 2797 2048 7635 225 126 21 chr6 160642059 160642965 -28636589 + L1MDa LINE L1 15 824 -5716 2887 13 0 0 chr6 160642965 160643280 -28636274 + AluYb8 SINE Alu 1 315 -3 7635 225 126 21 chr6 160643280 160645279 -28634275 + L1MDa LINE L1 824 3223 -3317 4370 192 8 0 chr6 160645278 160646131 -28633423 - L1P LINE L1 -1116 5030 4171 * 1746 153 41 0 chr6 160646131 160646421 -28633133 + L1PB4 LINE L1 5848 6154 -2 22 56 0 0 chr6 160646421 160646457 -28633097 + AT_rich Low_complexity Low_complexity 1 36 0 25 51 0 0 chr6 160646842 160646881 -28632673 + AT_rich Low_complexity Low_complexity 1 39 0 3673 242 55 15 chr6 160647531 160649056 -28630498 + L1MDa LINE L1 1869 3426 -3114 1066 146 92 4 chr6 160649062 160649301 -28630253 + L1MA7 LINE L1 6029 6288 -3 488 16 16 0 chr6 160649509 160649570 -28629984 + (TG)n Simple_repeat Simple_repeat 2 63 0 7541 91 5 15 chr6 160649842 160650910 -28628644 - MER11C LTR ERVK -14 1057 1 1324 203 84 58 chr6 160651425 160651805 -28627749 + MLT1B LTR MaLR 1 390 0 289 250 78 8 chr6 160652047 160652175 -28627379 + MER117 DNA MER1_type 2 138 -59 293 282 123 75 chr6 160653948 160654200 -28625354 - MLT1J LTR MaLR -10 501 238 420 248 97 14 chr6 160654225 160654370 -28625184 - MLT1L LTR MaLR -327 288 132 516 288 35 74 chr6 160655071 160655328 -28624226 + MIR SINE MIR 1 247 -15 382 322 97 22 chr6 160655599 160655826 -28623728 - L3 LINE CR1 -654 923 680 2262 92 3 0 chr6 160655826 160656119 -28623435 - AluY SINE Alu -9 302 9 21 36 0 0 chr6 160656713 160656741 -28622813 + AT_rich Low_complexity Low_complexity 1 28 0 202 329 73 12 chr6 160657301 160657383 -28622171 - MIR SINE MIR -97 111 25 255 250 0 0 chr6 160657784 160657836 -28621718 - L2 LINE L2 -1 3271 3220 245 207 69 0 chr6 160657844 160657902 -28621652 - MLT1I LTR MaLR -18 391 330 963 96 0 0 chr6 160657903 160658028 -28621526 + AluJb SINE Alu 1 125 -187 216 200 0 0 chr6 160658047 160658117 -28621437 + (TA)n Simple_repeat Simple_repeat 2 71 0 1080 156 0 11 chr6 160658133 160658313 -28621241 + AluJb SINE Alu 127 304 -8 507 283 159 45 chr6 160658316 160658606 -28620948 - MLT1I LTR MaLR -71 338 16 26 0 0 0 chr6 160659522 160659548 -28620006 + AT_rich Low_complexity Low_complexity 1 26 0 1576 193 44 36 chr6 160659560 160659922 -28619632 + MLT1A1 LTR MaLR 1 365 0 205 387 24 57 chr6 160660043 160660158 -28619396 - L2 LINE L2 -453 2861 2744 2534 125 0 14 chr6 160660158 160660527 -28619027 + THE1B LTR MaLR 1 364 0 9956 112 63 3 chr6 160660527 160662017 -28617537 + THE1B-int LTR MaLR 1 1580 0 2755 96 0 0 chr6 160662018 160662381 -28617173 + THE1B LTR MaLR 2 364 0 205 387 24 57 chr6 160662381 160662474 -28617080 - L2 LINE L2 -568 2746 2657 7417 35 0 3 chr6 160662581 160663870 -28615684 + L1PA4 LINE L1 4869 6154 -1 281 285 41 23 chr6 160663903 160664018 -28615536 + MER5B DNA MER1_type 1 122 -67 460 366 21 0 chr6 160664093 160664284 -28615270 - L2 LINE L2 -880 2434 2240 7701 121 35 16 chr6 160664573 160665843 -28613711 + HSMAR2 DNA Mariner 5 1298 -4 3259 167 46 77 chr6 160666064 160666914 -28612640 + L1MB8 LINE L1 5275 6098 -80 764 183 0 0 chr6 160666915 160667045 -28612509 + MER2 DNA MER2_type 2 131 -214 4057 181 33 14 chr6 160667045 160667291 -28612263 - MER6 DNA MER2_type 0 865 625 2156 120 50 34 chr6 160667291 160667649 -28611905 - THE1B LTR MaLR 0 364 1 4057 181 33 14 chr6 160667649 160668251 -28611303 - MER6 DNA MER2_type -240 625 1 3187 127 35 19 chr6 160668261 160668780 -28610774 + MER1A DNA MER1_type 1 527 0 234 61 0 143 chr6 160668780 160668829 -28610725 + MER2 DNA MER2_type 132 173 -172 276 239 134 0 chr6 160668914 160668981 -28610573 + MER2 DNA MER2_type 270 345 0 487 107 13 0 chr6 160668983 160669058 -28610496 + L1MB7 LINE L1 6101 6176 -8 227 282 262 0 chr6 160669058 160669161 -28610393 - MER5B DNA MER1_type -48 130 1 15124 30 1 2 chr6 160669787 160672372 -28607182 + L1PA3 LINE L1 3573 6155 0 1785 172 7 7 chr6 160673615 160673917 -28605637 + AluJb SINE Alu 1 302 -10 1763 175 20 64 chr6 160675368 160675773 -28603781 + MLT1B LTR MaLR 1 387 -3 381 312 118 61 chr6 160676331 160676924 -28602630 + L1MEc LINE L1 93 719 -5677 317 144 18 117 chr6 160676983 160677094 -28602460 + L1MC3 LINE L1 4303 4402 -1744 3612 211 92 7 chr6 160677105 160678630 -28600924 + L1MC3 LINE L1 4491 5403 -743 4786 194 45 23 chr6 160678640 160679786 -28599768 + L1MC3 LINE L1 6614 7785 0 642 269 54 7 chr6 160679854 160680133 -28599421 + L1MEc LINE L1 820 1111 -5285 292 301 71 18 chr6 160680133 160680246 -28599308 + MIR SINE MIR 118 236 -26 542 224 54 20 chr6 160680279 160680426 -28599128 - L2 LINE L2 -4 3309 3158 228 272 0 25 chr6 160680453 160680534 -28599020 + MLT1L LTR MaLR 1 79 -536 2052 142 134 8 chr6 160680571 160680951 -28598603 + MSTA LTR MaLR 1 428 0 8994 184 24 1 chr6 160680951 160682560 -28596994 + MSTA-int LTR MaLR 1 1647 -4 2158 149 108 8 chr6 160682571 160682960 -28596594 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr6 160683403 160683424 -28596130 + AT_rich Low_complexity Low_complexity 1 21 0 1691 104 0 9 chr6 160684175 160684492 -28595062 + L1PA8A LINE L1 5687 6119 -12 248 176 68 27 chr6 160684519 160684593 -28594961 + HAL1 LINE L1 1283 1359 -1148 345 299 126 4 chr6 160684665 160684896 -28594658 + HAL1 LINE L1 1525 1783 -724 324 0 0 0 chr6 160684938 160684974 -28594580 + (TG)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr6 160685148 160685170 -28594384 + (TA)n Simple_repeat Simple_repeat 2 23 0 24 32 0 0 chr6 160685320 160685351 -28594203 + AT_rich Low_complexity Low_complexity 1 31 0 303 167 0 0 chr6 160685699 160685753 -28593801 - MIR SINE MIR -207 55 2 21 36 0 0 chr6 160686157 160686185 -28593369 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 160686355 160686376 -28593178 + AT_rich Low_complexity Low_complexity 1 21 0 339 308 26 44 chr6 160686714 160686941 -28592613 + L1ME LINE L1 5525 5747 -374 325 280 88 115 chr6 160687731 160688313 -28591241 + L1M2 LINE L1 568 1133 -5716 320 316 80 80 chr6 160688172 160688508 -28591046 - L1M2 LINE L1 -5657 1192 857 * 341 271 31 0 chr6 160688712 160688808 -28590746 + MIR3 SINE MIR 89 187 -21 258 27 0 0 chr6 160689010 160689047 -28590507 - AluY SINE Alu -4 295 259 586 253 77 16 chr6 160690233 160690415 -28589139 - MIR SINE MIR -10 252 60 21 0 0 0 chr6 160690534 160690555 -28588999 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 160691739 160691761 -28587793 + AT_rich Low_complexity Low_complexity 1 22 0 11797 94 2 5 chr6 160692290 160694734 -28584820 - L1PA7 LINE L1 -10 6144 3703 8983 80 5 17 chr6 160694734 160696019 -28583535 + L1P3 LINE L1 384 1653 -4808 759 216 60 84 chr6 160696473 160696820 -28582734 - LTR37B LTR ERV1 -85 383 45 277 171 45 68 chr6 160696885 160696973 -28582581 - MIR SINE MIR -12 250 165 834 304 46 16 chr6 160698880 160699183 -28580371 - MLT1I LTR MaLR 0 409 98 425 185 23 8 chr6 160699462 160699592 -28579962 + (TAGA)n Simple_repeat Simple_repeat 1 132 0 3990 185 37 29 chr6 160700433 160702185 -28577369 + L1MB7 LINE L1 4407 6168 -16 946 238 83 28 chr6 160702775 160703137 -28576417 + L1MC4 LINE L1 7453 7834 -208 2044 168 39 32 chr6 160703137 160703685 -28575869 + MLT2A2 LTR ERVL 1 554 0 319 204 45 32 chr6 160703741 160703898 -28575656 + (TA)n Simple_repeat Simple_repeat 1 159 0 296 284 71 0 chr6 160703905 160704046 -28575508 + L1MC4 LINE L1 7892 8042 0 4913 182 16 0 chr6 160704143 160705084 -28574470 - Tigger1 DNA MER2_type -3 2415 1460 1099 233 49 3 chr6 160705075 160705401 -28574153 - HsTC2 DNA Tc2 -1412 486 146 * 915 207 6 0 chr6 160705423 160705602 -28573952 - MER58A DNA MER1_type -1 223 44 522 318 39 6 chr6 160705963 160706142 -28573412 + MIR SINE MIR 77 261 -1 717 296 90 6 chr6 160706713 160707124 -28572430 + LTR16C LTR ERVL 5 491 0 339 318 40 49 chr6 160707289 160707512 -28572042 + HERV16 LTR ERVL 384 604 -4392 424 347 35 35 chr6 160707675 160707989 -28571565 + HERV16 LTR ERVL 1599 1912 -3084 594 273 99 40 chr6 160708492 160708745 -28570809 + HERV16 LTR ERVL 2158 2425 -2571 770 353 44 19 chr6 160708760 160709317 -28570237 + HERV16 LTR ERVL 2634 3241 -1900 465 269 92 52 chr6 160709322 160709530 -28570024 + LTR16C LTR ERVL 180 401 -90 2448 85 0 22 chr6 160709530 160709846 -28569708 - AluSc SINE Alu 0 309 1 465 269 92 52 chr6 160709846 160709886 -28569668 + LTR16C LTR ERVL 401 438 -53 291 167 56 14 chr6 160709888 160709960 -28569594 - MER116 DNA Mariner -5 75 1 804 297 18 18 chr6 160710016 160710359 -28569195 - L1ME3A LINE L1 -218 5952 5610 286 319 50 28 chr6 160710568 160710709 -28568845 - L3b LINE CR1 -327 1256 1113 226 331 7 63 chr6 160710714 160710856 -28568698 + MER94 DNA DNA 1 134 0 190 269 21 152 chr6 160711610 160711755 -28567799 - MIR3 SINE MIR -45 163 38 2973 186 68 26 chr6 160711944 160712266 -28567288 - L1MA9 LINE L1 -25 6287 5980 6099 152 72 10 chr6 160712266 160713426 -28566128 + Tigger3b DNA MER2_type 1 1231 0 2973 186 68 26 chr6 160713426 160713899 -28565655 - L1MA9 LINE L1 -332 5980 5459 740 228 92 5 chr6 160714187 160714393 -28565161 + MER58A DNA MER1_type 1 224 0 878 211 73 0 chr6 160714401 160714605 -28564949 - MER20 DNA MER1_type 0 219 1 902 295 60 19 chr6 160714715 160715081 -28564473 + L2 LINE L2 1398 1778 -1536 1407 124 23 0 chr6 160715086 160715303 -28564251 + L1PA10 LINE L1 5936 6157 -11 432 266 90 71 chr6 160715328 160715424 -28564130 + L1MEc LINE L1 1325 1418 -4978 1967 145 0 0 chr6 160715424 160715730 -28563824 + AluSx SINE Alu 1 306 0 432 266 90 71 chr6 160715730 160715899 -28563655 + L1MEc LINE L1 1418 1596 -4800 1227 189 23 11 chr6 160717149 160717413 -28562141 - L1MB7 LINE L1 -133 6120 5854 2443 108 3 3 chr6 160717413 160717766 -28561788 + THE1B LTR MaLR 1 353 -11 9938 113 34 40 chr6 160717773 160719362 -28560192 + THE1B-int LTR MaLR 1 1580 0 1808 90 12 0 chr6 160719362 160719618 -28559936 + THE1B LTR MaLR 1 259 -105 1512 122 0 0 chr6 160719623 160719845 -28559709 - L1P3 LINE L1 -6239 222 1 374 235 0 0 chr6 160719840 160719925 -28559629 - L1MB7 LINE L1 -1148 5067 4983 * 1549 283 51 32 chr6 160719936 160720753 -28558801 + L1M4 LINE L1 3369 4201 -1945 2046 233 22 4 chr6 160720777 160721236 -28558318 - ERVL LTR ERVL -2516 3248 2782 1464 154 57 27 chr6 160721238 160721537 -28558017 + MLT1C LTR MaLR 1 308 -159 1176 240 64 15 chr6 160721537 160721946 -28557608 - L1ME1 LINE L1 -154 6012 5584 2066 156 0 3 chr6 160722262 160722569 -28556985 + AluSx SINE Alu 1 306 -6 5265 10 0 0 chr6 160722575 160723329 -28556225 - L1HS LINE L1 -281 5874 5121 2418 20 0 0 chr6 160723329 160723621 -28555933 + L1HS LINE L1 5864 6155 0 4301 231 73 33 chr6 160724020 160724895 -28554659 - L1MB7 LINE L1 -2217 3998 3159 904 139 0 0 chr6 160724895 160725024 -28554530 + FLAM_C SINE Alu 1 129 -4 4301 231 73 33 chr6 160725024 160725162 -28554392 - L1MB7 LINE L1 -3056 3159 3028 2481 60 3 0 chr6 160725162 160725463 -28554091 - AluY SINE Alu -9 302 1 4301 231 73 33 chr6 160725463 160726338 -28553216 - L1MB7 LINE L1 -3187 3028 2073 1512 281 75 24 chr6 160726370 160726958 -28552596 - MLT1E3 LTR MaLR 0 624 7 513 240 67 80 chr6 160726962 160727349 -28552205 - L1MEc LINE L1 -4355 1906 1525 * 551 230 110 28 chr6 160727332 160727533 -28552021 - L1M4 LINE L1 -1644 4502 4268 17758 123 8 4 chr6 160727533 160731203 -28548351 - L1PA8 LINE L1 -7 6165 2482 551 230 110 28 chr6 160731203 160731292 -28548262 - L1M4 LINE L1 -1878 4268 4188 2115 135 7 0 chr6 160731336 160731632 -28547922 - AluSq SINE Alu -15 298 1 724 311 44 43 chr6 160731705 160732564 -28546990 - L1MEc LINE L1 -4453 1808 818 1038 218 4 33 chr6 160732568 160732811 -28546743 - MLT1E LTR MaLR -9 584 349 501 266 90 16 chr6 160732818 160733006 -28546548 - MLT1E LTR MaLR -373 220 19 556 272 35 82 chr6 160733128 160733592 -28545962 - L1MEc LINE L1 -5306 764 323 298 299 20 14 chr6 160733684 160733831 -28545723 - L1MEc LINE L1 -5907 163 16 753 337 29 41 chr6 160733906 160734396 -28545158 + L1M3b LINE L1 499 982 -5797 1938 281 41 13 chr6 160734726 160735630 -28543924 + L1M3b LINE L1 1611 2539 -4310 3313 217 25 18 chr6 160735650 160736447 -28543107 - MLT1A1-int LTR MaLR -932 803 1 972 206 71 77 chr6 160736447 160736754 -28542800 - MLT1A1 LTR MaLR 0 365 59 3306 120 8 12 chr6 160736754 160737270 -28542284 + MER75 DNA T2_type 1 514 0 972 206 71 77 chr6 160737270 160737327 -28542227 - MLT1A1 LTR MaLR -306 59 3 7525 167 49 9 chr6 160737338 160738718 -28540836 + ERVL-B3 LTR ERVL 3007 4483 -1281 2563 84 46 18 chr6 160738759 160738774 -28540780 - MLT2A1 LTR ERVL -41 403 390 342 0 0 0 chr6 160738774 160738812 -28540742 + (CA)n Simple_repeat Simple_repeat 2 39 0 2563 84 46 18 chr6 160738812 160739188 -28540366 - MLT2A1 LTR ERVL -54 390 1 6739 68 5 2 chr6 160739188 160740085 -28539469 - HERVL-A1 LTR ERVL 0 5654 4756 6503 168 62 0 chr6 160740078 160741279 -28538275 + ERVL-B3 LTR ERVL 4482 5757 -7 * 454 88 0 0 chr6 160741279 160741347 -28538207 + MLT2B3 LTR ERVL 1 68 -486 1950 199 41 59 chr6 160741452 160741896 -28537658 + MLT2B3 LTR ERVL 76 512 -42 201 39 0 0 chr6 160741896 160741922 -28537632 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 1950 199 41 59 chr6 160741922 160741965 -28537589 + MLT2B3 LTR ERVL 512 554 0 883 259 88 47 chr6 160742101 160742587 -28536967 + MLT1H LTR MaLR 43 548 -1 375 385 44 71 chr6 160742617 160742643 -28536911 - L2 LINE L2 -10 3262 3237 2121 135 33 28 chr6 160742643 160743005 -28536549 - THE1B LTR MaLR 0 364 1 11862 89 6 3 chr6 160743005 160744580 -28534974 - THE1B-int LTR MaLR 0 1580 1 1943 136 57 25 chr6 160744580 160744933 -28534621 - THE1B LTR MaLR 0 364 1 375 385 44 71 chr6 160744933 160745340 -28534214 - L2 LINE L2 -32 3240 2839 270 173 115 0 chr6 160746058 160746110 -28533444 + L2 LINE L2 3213 3270 -2 220 333 87 0 chr6 160746126 160746195 -28533359 + MIR3 SINE MIR 118 192 -16 1338 141 101 4 chr6 160746703 160746979 -28532575 - L1MB5 LINE L1 0 6174 5872 14245 35 0 0 chr6 160849049 160851533 -28428021 - L1PA4 LINE L1 -11 6144 3668 29 28 0 0 chr6 160851740 160851776 -28427778 + AT_rich Low_complexity Low_complexity 1 36 0 2050 145 0 3 chr6 160851812 160852122 -28427432 - AluSx SINE Alu -3 309 1 2397 96 0 10 chr6 160853160 160853473 -28426081 + AluSg SINE Alu 1 310 0 226 324 132 7 chr6 160853649 160853785 -28425769 + MIR SINE MIR 27 179 -83 1193 199 14 0 chr6 160853880 160854096 -28425458 - MER20 DNA MER1_type 0 219 1 286 263 26 13 chr6 160854105 160854181 -28425373 + L2 LINE L2 3189 3265 -7 375 338 70 77 chr6 160855161 160855569 -28423985 + L2 LINE L2 2548 2949 -323 2141 114 0 0 chr6 160855569 160855859 -28423695 + AluY SINE Alu 1 290 -21 375 338 70 77 chr6 160855859 160856120 -28423434 + L2 LINE L2 2949 3210 -62 1383 129 8 123 chr6 160856426 160856791 -28422763 - MER33 DNA MER1_type -1 323 1 237 65 0 0 chr6 160857489 160857520 -28422034 + (CA)n Simple_repeat Simple_repeat 2 32 0 659 320 133 9 chr6 160857525 160857953 -28421601 - LTR33 LTR ERVL -6 515 35 2094 125 7 0 chr6 160858002 160858298 -28421256 - AluSx SINE Alu -14 298 1 475 239 239 0 chr6 160858539 160858673 -28420881 + MIR SINE MIR 70 235 -27 777 142 8 16 chr6 160858892 160859019 -28420535 + FLAM_C SINE Alu 1 126 -17 25 65 0 0 chr6 160859074 160859120 -28420434 + AT_rich Low_complexity Low_complexity 1 46 0 605 102 0 0 chr6 160859299 160859387 -28420167 + AluSg/x SINE Alu 208 295 -15 316 338 60 15 chr6 160859392 160859525 -28420029 - L2 LINE L2 -24 3248 3110 7524 30 0 0 chr6 160859588 160861109 -28418445 - L1PA4 LINE L1 0 6155 4634 2844 10 0 0 chr6 160861990 160862298 -28417256 + AluYa5 SINE Alu 1 308 -3 243 333 56 69 chr6 160862503 160863067 -28416487 - L2 LINE L2 -166 3106 2547 745 314 81 65 chr6 160863079 160863786 -28415768 - L2 LINE L2 -896 2418 1701 457 294 20 26 chr6 160864064 160864217 -28415337 + MIR3 SINE MIR 25 176 -32 1914 266 41 52 chr6 160864567 160865468 -28414086 + L2 LINE L2 2407 3297 -16 25 0 0 0 chr6 160867215 160867240 -28412314 + AT_rich Low_complexity Low_complexity 1 25 0 405 309 18 119 chr6 160867445 160867772 -28411782 - MLT1L LTR MaLR -221 394 101 5460 78 0 0 chr6 160869174 160869868 -28409686 - THE1B-int LTR MaLR -884 696 3 2315 95 48 28 chr6 160869870 160870227 -28409327 - THE1B LTR MaLR 0 364 1 2318 96 3 3 chr6 160871508 160871809 -28407745 + AluSq SINE Alu 1 301 -12 332 341 65 18 chr6 160872188 160872405 -28407149 - MIR SINE MIR -25 237 11 1920 228 50 43 chr6 160873029 160873684 -28405870 - L1MEc LINE L1 -4201 2195 1536 13245 28 2 1 chr6 160873697 160876042 -28403512 - L1PA4 LINE L1 -3 6152 3805 198 312 143 0 chr6 160876099 160876176 -28403378 - L2 LINE L2 -42 3271 3184 204 40 0 0 chr6 160876347 160876372 -28403182 + (TG)n Simple_repeat Simple_repeat 2 26 0 443 206 0 8 chr6 160876380 160876506 -28403048 + GA-rich Low_complexity Low_complexity 2 126 0 300 352 0 0 chr6 160877365 160877456 -28402098 + MER58B DNA MER1_type 1 91 -250 605 234 78 0 chr6 160877465 160877632 -28401922 - L1MB5 LINE L1 -14 6658 6479 2391 127 8 19 chr6 160877641 160878020 -28401534 - THE1C LTR MaLR 0 375 1 4758 123 4 11 chr6 160878020 160878727 -28400827 - THE1C-int LTR MaLR 0 1580 879 658 321 33 3 chr6 160878731 160878769 -28400785 - L1MD1 LINE L1 -212 6030 5625 2176 128 41 22 chr6 160878769 160879137 -28400417 - THE1C LTR MaLR 0 375 1 2974 196 27 55 chr6 160879137 160880274 -28399280 - L1MB5 LINE L1 -191 6481 5377 986 181 48 24 chr6 160880276 160880486 -28399068 - MSTB1 LTR MaLR 0 432 218 15612 157 21 10 chr6 160880527 160881582 -28397972 + L1MA2 LINE L1 2298 3341 -4382 1548 135 20 20 chr6 160881582 160881826 -28397728 - AluSx SINE Alu -16 296 53 15612 157 21 10 chr6 160881826 160886136 -28393418 + L1MA2 LINE L1 3341 7713 -10 1817 240 28 43 chr6 160886155 160886801 -28392753 - L1MB5 LINE L1 -1811 4833 4198 * 3812 228 53 46 chr6 160886794 160889155 -28390399 - L1MB5 LINE L1 -4212 2434 1 6257 89 13 2 chr6 160889189 160889840 -28389714 - L1PA14 LINE L1 -9 6152 5510 2226 100 0 10 chr6 160889840 160890149 -28389405 - AluY SINE Alu -5 306 1 6257 89 13 2 chr6 160890149 160890864 -28388690 - L1PA14 LINE L1 -651 5510 4770 1738 168 3 12 chr6 160890869 160891203 -28388351 + L1PA14 LINE L1 4429 4759 -1387 1095 209 36 0 chr6 160891212 160891437 -28388117 + MER58B DNA MER1_type 105 337 -4 1204 222 107 53 chr6 160891765 160892209 -28387345 + MLT1C LTR MaLR 5 467 0 183 80 0 0 chr6 160892438 160892463 -28387091 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 191 364 186 0 chr6 160892497 160892637 -28386917 + MIR3 SINE MIR 33 198 -10 23 33 0 0 chr6 160893037 160893067 -28386487 + AT_rich Low_complexity Low_complexity 1 30 0 392 226 17 78 chr6 160895108 160895223 -28384331 + MER94 DNA DNA 16 123 -11 1810 308 56 28 chr6 160895408 160895913 -28383641 - HAL1 LINE L1 -1693 814 278 2178 112 3 0 chr6 160895913 160896207 -28383347 - AluSg SINE Alu -14 296 2 1810 308 56 28 chr6 160896207 160896489 -28383065 - HAL1 LINE L1 -2229 278 5 231 314 8 8 chr6 160896527 160896645 -28382909 - L1 LINE L1 -1800 4346 4229 605 330 66 16 chr6 160896645 160896963 -28382591 + L2 LINE L2 1822 2155 -1159 26 0 0 0 chr6 160897609 160897635 -28381919 + AT_rich Low_complexity Low_complexity 1 26 0 316 239 87 11 chr6 160897676 160897768 -28381786 - MIR SINE MIR -72 190 92 264 100 0 0 chr6 160897965 160898005 -28381549 + (TG)n Simple_repeat Simple_repeat 1 40 0 262 351 149 36 chr6 160898403 160899129 -28380425 + L2 LINE L2 1809 2616 -698 22 0 0 0 chr6 160899135 160899157 -28380397 + AT_rich Low_complexity Low_complexity 1 22 0 1333 240 46 18 chr6 160899161 160899553 -28380001 - L1ME2 LINE L1 -11 6153 5751 192 336 41 49 chr6 160900078 160900200 -28379354 + MIR SINE MIR 63 142 -66 443 227 73 9 chr6 160900585 160900695 -28378859 - L2 LINE L2 0 3313 3197 970 193 13 4 chr6 160900789 160901017 -28378537 - L1MA4 LINE L1 -11 6289 6060 884 160 92 55 chr6 160901806 160902094 -28377460 + THE1C LTR MaLR 1 287 -141 9396 121 29 47 chr6 160902122 160903730 -28375824 + THE1C-int LTR MaLR 3 1580 0 1012 178 100 25 chr6 160903730 160903971 -28375583 + THE1C LTR MaLR 1 259 -116 420 20 0 0 chr6 160907159 160907208 -28372346 + (TG)n Simple_repeat Simple_repeat 1 49 0 204 268 0 0 chr6 160908250 160908306 -28371248 + GA-rich Low_complexity Low_complexity 1 56 0 26 0 0 0 chr6 160910803 160910829 -28368725 + AT_rich Low_complexity Low_complexity 1 26 0 204 311 76 25 chr6 160913098 160913217 -28366337 - L3 LINE CR1 -184 1393 1269 380 288 66 70 chr6 160913300 160913557 -28365997 - L3 LINE CR1 -620 957 702 192 103 77 26 chr6 160915991 160916030 -28363524 + MIR SINE MIR 119 159 -103 348 292 0 52 chr6 160916271 160916367 -28363187 - MIR SINE MIR -61 147 57 192 77 0 0 chr6 160916404 160916430 -28363124 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 312 324 109 29 chr6 160916491 160916729 -28362825 + L2 LINE L2 572 828 -2486 22 0 0 0 chr6 160916729 160916751 -28362803 + AT_rich Low_complexity Low_complexity 1 22 0 243 344 146 72 chr6 160918233 160919188 -28360366 - L2 LINE L2 -358 2956 1932 4330 210 32 11 chr6 160919221 160920598 -28358956 - L1M1 LINE L1 -4065 1263 474 685 249 24 0 chr6 160920591 160920760 -28358794 - L1M1 LINE L1 -5142 186 14 * 1000 176 63 129 chr6 160920771 160921135 -28358419 - MLT1A2 LTR MaLR -34 340 1 213 343 97 0 chr6 160921213 160921388 -28358166 - L2 LINE L2 -1497 1817 1626 1374 208 24 24 chr6 160921942 160922231 -28357323 + AluJo SINE Alu 1 289 -13 261 0 0 0 chr6 160922709 160922738 -28356816 + (TA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr6 160923178 160923201 -28356353 + AT_rich Low_complexity Low_complexity 1 23 0 474 219 194 19 chr6 160923821 160923976 -28355578 - MER5A DNA MER1_type -7 182 1 301 385 0 15 chr6 160924297 160924432 -28355122 + L2 LINE L2 3180 3312 -1 252 0 0 0 chr6 160924676 160924704 -28354850 + (A)n Simple_repeat Simple_repeat 1 28 0 246 288 64 48 chr6 160924899 160925024 -28354530 + MIR3 SINE MIR 14 140 -68 193 135 108 0 chr6 160927100 160927137 -28352417 + L2 LINE L2 3271 3311 -2 2497 147 34 52 chr6 160927441 160927917 -28351637 + MLT1C LTR MaLR 1 467 0 2373 202 110 12 chr6 160928118 160928578 -28350976 + MLT2B3 LTR ERVL 1 515 -39 468 0 0 0 chr6 160928578 160928630 -28350924 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 2373 202 110 12 chr6 160928630 160928670 -28350884 + MLT2B3 LTR ERVL 515 550 -4 24 0 0 0 chr6 160928671 160928695 -28350859 + AT_rich Low_complexity Low_complexity 1 24 0 581 316 143 0 chr6 160928717 160928926 -28350628 - MIR SINE MIR -19 243 5 335 280 105 28 chr6 160930008 160930151 -28349403 + MIR SINE MIR 12 165 -97 290 299 11 0 chr6 160931259 160931346 -28348208 - MER5B DNA MER1_type 0 178 91 571 308 98 44 chr6 160931474 160931812 -28347742 + L2 LINE L2 2838 3193 -120 277 290 50 30 chr6 160932379 160932479 -28347075 - MIR3 SINE MIR -10 198 97 216 282 12 82 chr6 160932662 160932747 -28346807 + MER5A DNA MER1_type 110 188 -1 29 28 0 0 chr6 160933305 160933341 -28346213 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr6 160933638 160933667 -28345887 + AT_rich Low_complexity Low_complexity 1 29 0 268 339 17 17 chr6 160933959 160934074 -28345480 + L2 LINE L2 3199 3313 0 571 304 52 5 chr6 160935231 160935425 -28344129 - Charlie8 DNA MER1_type -2214 203 1 237 273 143 30 chr6 160935431 160935585 -28343969 + MIR3 SINE MIR 1 169 -39 211 326 68 30 chr6 160936328 160936460 -28343094 + MIR SINE MIR 76 212 -50 793 143 0 0 chr6 160936800 160936933 -28342621 - L1PB1 LINE L1 -1 6150 6018 12192 129 26 13 chr6 160937187 160939164 -28340390 - Tigger1 DNA MER2_type 0 2418 416 5227 133 1 0 chr6 160939170 160939936 -28339618 - L1PA15 LINE L1 -4 6161 5395 2185 174 8 0 chr6 160939938 160940306 -28339248 - Tigger1 DNA MER2_type -2006 412 42 6585 64 6 33 chr6 160940375 160941462 -28338092 + L1PA7 LINE L1 5123 6184 0 205 211 0 0 chr6 160943141 160943179 -28336375 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 1100 67 0 0 chr6 160943599 160943734 -28335820 + AluSg/x SINE Alu 165 299 -13 25 31 0 0 chr6 160943967 160943999 -28335555 + AT_rich Low_complexity Low_complexity 1 32 0 630 249 88 17 chr6 160944268 160944449 -28335105 + MIR SINE MIR 9 202 -60 239 335 70 43 chr6 160944773 160944958 -28334596 + L3 LINE CR1 1262 1451 -126 3566 163 27 5 chr6 160944983 160945620 -28333934 - L1PA16 LINE L1 0 6166 5516 261 0 0 0 chr6 160945693 160945722 -28333832 + (GA)n Simple_repeat Simple_repeat 2 30 0 2439 57 0 7 chr6 160947041 160947339 -28332215 - AluY SINE Alu -15 296 1 296 314 88 25 chr6 160947996 160948155 -28331399 + MER5A DNA MER1_type 17 185 -4 216 0 0 0 chr6 160948258 160948282 -28331272 + (CATTA)n Simple_repeat Simple_repeat 2 25 0 411 264 154 46 chr6 160948711 160948908 -28330646 - MIR SINE MIR -1 261 43 212 342 53 0 chr6 160948960 160949036 -28330518 - L2 LINE L2 -32 3240 3161 234 351 110 7 chr6 160949239 160949393 -28330161 - MIR SINE MIR -36 226 57 1129 283 78 24 chr6 160950545 160950927 -28328627 - LTR16A LTR ERVL -30 420 18 223 375 12 0 chr6 160951749 160951829 -28327725 - L2 LINE L2 -4 3268 3188 23 92 0 0 chr6 160952469 160952534 -28327020 + AT_rich Low_complexity Low_complexity 1 65 0 723 315 66 7 chr6 160954214 160954503 -28325051 - L2 LINE L2 -2 3311 3006 1977 176 55 24 chr6 160954507 160954928 -28324626 - MLT1C LTR MaLR 0 467 34 1699 265 95 17 chr6 160954986 160955684 -28323870 - L2 LINE L2 -311 3002 2245 185 323 15 15 chr6 160956673 160956738 -28322816 - L2 LINE L2 -2 3311 3247 1306 177 52 38 chr6 160957784 160958102 -28321452 - MER61B LTR ERV1 -5 774 1 632 174 186 0 chr6 160960049 160960221 -28319333 + L1MC4 LINE L1 7839 8042 0 21 0 0 0 chr6 160960808 160960829 -28318725 + AT_rich Low_complexity Low_complexity 1 21 0 2067 143 0 0 chr6 160961089 160961382 -28318172 - AluSx SINE Alu -19 293 1 250 353 59 11 chr6 160961467 160961654 -28317900 + L2 LINE L2 2458 2653 -661 14649 110 2 2 chr6 160961671 160963839 -28315715 - L1P LINE L1 -1503 4643 2476 21 36 0 0 chr6 160964119 160964147 -28315407 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 160964159 160964187 -28315367 + AT_rich Low_complexity Low_complexity 1 28 0 4918 193 22 32 chr6 160966167 160967287 -28312267 - L1MD2 LINE L1 -15 6344 5236 2165 242 32 32 chr6 160967894 160968461 -28311093 + MLT1E LTR MaLR 27 593 0 460 314 78 27 chr6 160968488 160968822 -28310732 - L1ME LINE L1 -393 5728 5378 358 319 72 38 chr6 160970319 160970554 -28309000 - L2 LINE L2 -195 3077 2835 928 236 147 28 chr6 160970976 160971302 -28308252 - MLT1A1 LTR MaLR 0 365 1 228 264 55 33 chr6 160974562 160974653 -28304901 + L2 LINE L2 3178 3270 -2 418 248 18 18 chr6 160974776 160974885 -28304669 - L3 LINE CR1 -80 1497 1389 573 145 0 43 chr6 160975080 160975197 -28304357 - L1MA10 LINE L1 0 6334 6223 336 255 51 0 chr6 160975233 160975331 -28304223 - MIR3 SINE MIR -23 185 83 23 0 0 0 chr6 160976071 160976094 -28303460 + AT_rich Low_complexity Low_complexity 1 23 0 2442 127 19 3 chr6 160977549 160977918 -28301636 + THE1C LTR MaLR 1 375 0 1689 163 39 3 chr6 160978030 160978312 -28301242 + AluJb SINE Alu 1 292 -20 984 273 79 43 chr6 160978535 160979180 -28300374 - L1MB8 LINE L1 -226 5952 5285 360 294 179 34 chr6 160979212 160979749 -28299805 - L1MB8 LINE L1 -971 5175 4561 1296 199 41 22 chr6 160979759 160980030 -28299524 + AluJo SINE Alu 18 293 -19 205 160 9 47 chr6 160980708 160980814 -28298740 + (TAA)n Simple_repeat Simple_repeat 3 104 0 337 341 78 34 chr6 160981031 160981439 -28298115 + L2 LINE L2 2036 2461 -853 813 251 88 25 chr6 160982311 160982550 -28297004 + LTR16A LTR ERVL 196 449 -1 2692 42 0 0 chr6 160983085 160983392 -28296162 + AluY SINE Alu 1 307 -4 301 325 71 8 chr6 160983645 160983771 -28295783 + L1ME3A LINE L1 5757 5890 -280 326 300 29 18 chr6 160983873 160984043 -28295511 + L1ME3A LINE L1 5988 6159 -11 362 353 53 11 chr6 160984702 160984892 -28294662 - MIR3 SINE MIR -6 202 5 281 371 86 6 chr6 160986988 160987163 -28292391 - MIR SINE MIR -70 192 4 2220 137 31 17 chr6 160987181 160987538 -28292016 + THE1B LTR MaLR 3 364 0 11565 92 11 3 chr6 160987538 160989105 -28290449 + THE1B-int LTR MaLR 1 1580 0 2214 148 28 17 chr6 160989106 160989465 -28290089 + THE1B LTR MaLR 2 364 0 206 224 255 31 chr6 160990171 160990269 -28289285 + MIR SINE MIR 28 147 -115 * 460 300 234 19 chr6 160990267 160990728 -28288826 - L2 LINE L2 -4 3309 2739 192 289 92 0 chr6 160990741 160990817 -28288737 + MIR SINE MIR 170 252 -10 261 323 88 26 chr6 160993271 160993578 -28285976 + L1ME LINE L1 5566 5891 -230 209 297 81 0 chr6 160993712 160993786 -28285768 - MIR SINE MIR -58 204 125 356 226 129 0 chr6 160994052 160994145 -28285409 + MIR SINE MIR 86 190 -72 258 156 0 0 chr6 160994145 160994190 -28285364 + (CA)n Simple_repeat Simple_repeat 1 45 0 191 300 0 0 chr6 160994276 160994326 -28285228 + MIR SINE MIR 213 262 0 23 33 0 0 chr6 160994517 160994547 -28285007 + AT_rich Low_complexity Low_complexity 1 30 0 336 243 127 63 chr6 160994635 160994903 -28284651 - L1M4 LINE L1 -1785 4361 4077 1721 157 0 22 chr6 160994916 160995183 -28284371 - AluSx SINE Alu -51 261 1 238 335 44 27 chr6 160995184 160995477 -28284077 - L1M4 LINE L1 -2142 4004 3707 378 286 57 62 chr6 160995610 160996068 -28283486 - L1M4 LINE L1 -2590 3556 3099 183 42 0 0 chr6 160996068 160996092 -28283462 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 378 286 57 62 chr6 160996092 160996110 -28283444 - L1M4 LINE L1 -3047 3099 3082 207 200 0 71 chr6 160996447 160996532 -28283022 + T-rich Low_complexity Low_complexity 4 82 0 22 0 0 0 chr6 160997028 160997050 -28282504 + AT_rich Low_complexity Low_complexity 1 22 0 2487 80 0 0 chr6 160997054 160997365 -28282189 - AluY SINE Alu 0 311 1 22991 46 4 0 chr6 160997367 161001025 -28278529 - L1PA5 LINE L1 -3 6151 2485 24 32 0 0 chr6 161001063 161001094 -28278460 + AT_rich Low_complexity Low_complexity 1 31 0 455 308 104 66 chr6 161001095 161001762 -28277792 - HAL1 LINE L1 -922 1585 887 2277 101 7 0 chr6 161001762 161002069 -28277485 - AluSg SINE Alu -1 309 1 455 308 104 66 chr6 161002069 161002124 -28277430 - HAL1 LINE L1 -1620 887 836 188 214 18 0 chr6 161004331 161004387 -28275167 + CT-rich Low_complexity Low_complexity 4 60 0 669 140 0 0 chr6 161054838 161054938 -28224616 + AluJb SINE Alu 194 293 -19 345 338 87 10 chr6 161055061 161055268 -28224286 - L2 LINE L2 -214 3058 2836 22 35 0 0 chr6 161057167 161057196 -28222358 + AT_rich Low_complexity Low_complexity 1 29 0 1776 298 51 16 chr6 161057380 161058008 -28221546 + L1MEc LINE L1 181 830 -5566 286 289 55 119 chr6 161058098 161058299 -28221255 - L2 LINE L2 -211 3102 2915 2285 92 0 0 chr6 161059857 161060152 -28219402 + AluY SINE Alu 1 295 -16 1660 154 20 7 chr6 161060731 161061037 -28218517 + L1MA7 LINE L1 5982 6291 0 3527 104 30 2 chr6 161061037 161061571 -28217983 + L1PA14 LINE L1 5593 6143 -18 2059 110 0 36 chr6 161061789 161062098 -28217456 + AluSx SINE Alu 6 303 -9 405 319 73 47 chr6 161062276 161062593 -28216961 + L1MEc LINE L1 2185 2509 -3706 514 275 92 57 chr6 161062834 161063609 -28215945 + L1MEc LINE L1 2807 3608 -2607 4191 209 50 21 chr6 161064023 161065723 -28213831 - L1MB5 LINE L1 0 6174 4442 27 0 0 0 chr6 161065911 161065938 -28213616 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr6 161066015 161066042 -28213512 + AT_rich Low_complexity Low_complexity 1 27 0 497 224 0 37 chr6 161066222 161066356 -28213198 - MLT1D LTR MaLR -398 107 1 1925 215 56 128 chr6 161066356 161067122 -28212432 - MLT1D-int LTR MaLR 0 1371 661 478 161 109 132 chr6 161067176 161067350 -28212204 - MLT1D-int LTR MaLR -711 660 491 6041 180 49 3 chr6 161067350 161068508 -28211046 - Tigger3b DNA MER2_type 0 1231 21 2248 112 0 0 chr6 161068511 161068824 -28210730 + AluSq SINE Alu 1 313 0 1569 234 106 9 chr6 161068856 161069309 -28210245 - MLT1D-int LTR MaLR -874 497 1 1344 277 12 3 chr6 161069309 161069648 -28209906 - MLT1D LTR MaLR 0 505 164 247 247 82 96 chr6 161071379 161071525 -28208029 - L2 LINE L2 -5 3308 3165 342 188 72 0 chr6 161071561 161071630 -28207924 - MIR SINE MIR -29 233 160 450 335 146 27 chr6 161071719 161072131 -28207423 - L2 LINE L2 -528 2786 2326 219 338 25 0 chr6 161072188 161072268 -28207286 + L3 LINE CR1 1495 1576 -1 1901 141 49 35 chr6 161072443 161072813 -28206741 - THE1C LTR MaLR 0 375 1 642 289 95 4 chr6 161073470 161073702 -28205852 + MIR SINE MIR 9 261 -1 409 206 45 77 chr6 161074041 161074196 -28205358 - MLT1H LTR MaLR -23 526 377 743 287 155 18 chr6 161074829 161075209 -28204345 - L2 LINE L2 -1 3312 2881 238 296 64 48 chr6 161075298 161075423 -28204131 + L2 LINE L2 3103 3229 -43 326 328 103 17 chr6 161075908 161076082 -28203472 - MIR3 SINE MIR -13 195 7 1460 186 0 37 chr6 161076392 161076688 -28202866 + AluJo SINE Alu 5 289 -23 335 336 60 17 chr6 161076950 161077182 -28202372 + L1MEc LINE L1 250 491 -6072 * 515 292 73 14 chr6 161077180 161077599 -28201955 + L1MEc LINE L1 1243 1837 -4726 959 253 63 18 chr6 161077599 161078312 -28201242 + L1MEc LINE L1 2968 3743 -2639 1158 83 0 0 chr6 161078312 161078456 -28201098 + AluY SINE Alu 1 144 -167 2157 112 0 26 chr6 161078518 161078823 -28200731 - AluSx SINE Alu -15 297 1 238 343 67 27 chr6 161078910 161079151 -28200403 + MIR SINE MIR 7 251 -11 22 0 0 0 chr6 161079439 161079461 -28200093 + AT_rich Low_complexity Low_complexity 1 22 0 1776 212 114 59 chr6 161079536 161080079 -28199475 - MER77 LTR ERV1 -21 584 12 273 29 0 0 chr6 161080170 161080204 -28199350 + (TATTG)n Simple_repeat Simple_repeat 2 35 0 1552 169 21 31 chr6 161080208 161080498 -28199056 - AluJo SINE Alu -25 287 1 21 0 0 0 chr6 161080739 161080760 -28198794 + AT_rich Low_complexity Low_complexity 1 21 0 188 200 20 0 chr6 161081302 161081352 -28198202 + CT-rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr6 161081458 161081480 -28198074 + AT_rich Low_complexity Low_complexity 1 22 0 284 148 16 0 chr6 161081747 161081808 -28197746 + GA-rich Low_complexity Low_complexity 1 62 0 234 0 0 0 chr6 161082112 161082138 -28197416 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1192 147 0 0 chr6 161082264 161082441 -28197113 - AluY SINE Alu -7 304 128 2031 138 0 3 chr6 161086013 161086294 -28193260 + AluSg SINE Alu 1 281 -29 1210 82 0 16 chr6 161086294 161086477 -28193077 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 213 39 0 0 chr6 161086476 161086502 -28193052 + (CAGG)n Simple_repeat Simple_repeat 2 27 0 * 2031 138 0 3 chr6 161086477 161086511 -28193043 + AluSg SINE Alu 281 290 -20 189 102 265 0 chr6 161087408 161087457 -28192097 - L3 LINE CR1 -384 1193 1132 1870 153 59 6 chr6 161087476 161087796 -28191758 - MER1B DNA MER1_type 0 337 1 1395 129 73 4 chr6 161088303 161088551 -28191003 - L1 LINE L1 -1240 4906 4642 273 254 45 0 chr6 161088746 161088813 -28190741 - L2 LINE L2 -2 3270 3201 4272 85 15 15 chr6 161089286 161089368 -28190186 + L1PA11 LINE L1 5562 5643 -531 2591 91 101 12 chr6 161089368 161089556 -28189998 + MLT2A1 LTR ERVL 1 171 -273 486 0 0 0 chr6 161089556 161089610 -28189944 + (CGAGA)n Simple_repeat Simple_repeat 2 55 0 591 60 0 0 chr6 161089612 161089696 -28189858 + (CAGCC)n Simple_repeat Simple_repeat 2 85 0 2591 91 101 12 chr6 161089696 161089912 -28189642 + MLT2A1 LTR ERVL 171 444 0 4272 85 15 15 chr6 161089912 161090439 -28189115 + L1PA11 LINE L1 5642 6171 -3 24 32 0 0 chr6 161091014 161091045 -28188509 + AT_rich Low_complexity Low_complexity 1 31 0 2167 111 3 3 chr6 161091119 161091408 -28188146 - AluSc SINE Alu -20 289 1 5156 169 23 1 chr6 161091436 161092753 -28186801 + L1PB4 LINE L1 4781 6129 -27 192 40 0 0 chr6 161092782 161092807 -28186747 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 30 45 0 0 chr6 161092840 161092884 -28186670 + AT_rich Low_complexity Low_complexity 1 44 0 366 280 155 56 chr6 161093852 161094444 -28185110 - L1ME4a LINE L1 -69 6052 5402 306 261 45 0 chr6 161094619 161094730 -28184824 + (TA)n Simple_repeat Simple_repeat 2 117 0 207 209 0 0 chr6 161095201 161095244 -28184310 + T-rich Low_complexity Low_complexity 1 43 0 286 327 40 0 chr6 161096346 161096447 -28183107 - L2 LINE L2 -31 3241 3137 207 0 0 0 chr6 161096479 161096502 -28183052 + (A)n Simple_repeat Simple_repeat 1 23 0 5320 96 73 2 chr6 161096502 161097307 -28182247 + L1PA7 LINE L1 5293 6154 0 249 57 0 0 chr6 161097327 161097362 -28182192 + (TA)n Simple_repeat Simple_repeat 2 36 0 3428 178 32 1 chr6 161097362 161098019 -28181535 + L1MB1 LINE L1 5495 6171 -18 184 394 91 0 chr6 161098370 161098469 -28181085 - L2 LINE L2 -2 3270 3163 807 241 0 0 chr6 161098633 161098803 -28180751 + FRAM SINE Alu 1 170 -6 1086 206 86 51 chr6 161099375 161099764 -28179790 + MLT2B1 LTR ERVL 1 480 -40 200 226 16 0 chr6 161099781 161099843 -28179711 + (CATA)n Simple_repeat Simple_repeat 2 64 0 380 269 131 0 chr6 161101033 161101193 -28178361 - MIR SINE MIR -35 227 47 193 356 84 47 chr6 161101395 161101754 -28177800 - L2 LINE L2 -1410 1904 1533 589 254 35 86 chr6 161102571 161102827 -28176727 - MER112 DNA MER1_type -14 246 4 30 27 0 0 chr6 161104196 161104233 -28175321 + AT_rich Low_complexity Low_complexity 1 37 0 2249 111 0 0 chr6 161104248 161104537 -28175017 - AluSc SINE Alu -20 289 1 1719 117 98 8 chr6 161104697 161104961 -28174593 - AluSx SINE Alu -24 288 1 214 308 0 0 chr6 161104963 161105015 -28174539 + L2 LINE L2 2999 3050 -222 869 282 157 19 chr6 161105096 161105625 -28173929 - L2 LINE L2 -1 3312 2688 439 261 104 0 chr6 161106545 161106660 -28172894 + MIR SINE MIR 19 145 -117 1547 169 47 38 chr6 161106719 161107038 -28172516 - THE1C LTR MaLR -50 325 4 9624 131 10 43 chr6 161107041 161108628 -28170926 - THE1C-int LTR MaLR 0 1580 46 1849 148 78 28 chr6 161108652 161109009 -28170545 - THE1C LTR MaLR 0 375 1 257 167 0 17 chr6 161109151 161109211 -28170343 + GA-rich Low_complexity Low_complexity 4 62 0 335 187 30 45 chr6 161109377 161109511 -28170043 + (TTATA)n Simple_repeat Simple_repeat 5 136 0 266 0 29 0 chr6 161109511 161109545 -28170009 + (CA)n Simple_repeat Simple_repeat 2 36 0 2112 134 0 7 chr6 161109545 161109850 -28169704 - AluSx SINE Alu -9 303 1 6409 84 25 11 chr6 161112877 161113771 -28165783 + MER11B LTR ERVK 1 906 -330 201 285 28 26 chr6 161114987 161115142 -28164412 + MIR SINE MIR 28 255 -7 236 269 161 0 chr6 161115199 161115292 -28164262 + L2 LINE L2 2895 3002 -270 1099 257 163 13 chr6 161116605 161117053 -28162501 + LTR33 LTR ERVL 5 519 -2 180 313 0 75 chr6 161117547 161117614 -28161940 + L3 LINE CR1 1514 1575 -2 336 302 134 7 chr6 161117767 161117916 -28161638 - L2 LINE L2 -1 3271 3104 53 93 0 0 chr6 161119733 161119884 -28159670 + AT_rich Low_complexity Low_complexity 1 151 0 488 311 90 30 chr6 161120134 161120536 -28159018 + L1MCc LINE L1 92 517 -5906 712 298 55 15 chr6 161120716 161120988 -28158566 + L1MCc LINE L1 814 1096 -5327 354 183 0 0 chr6 161121012 161121072 -28158482 + Charlie5 DNA MER1_type 8 67 -2545 1199 270 133 29 chr6 161121208 161121571 -28157983 + L1MCc LINE L1 1172 1496 -5626 396 0 0 0 chr6 161121571 161121615 -28157939 + (CA)n Simple_repeat Simple_repeat 2 45 0 1199 270 133 29 chr6 161121615 161122281 -28157273 + L1MCc LINE L1 1496 2091 -5031 1600 189 29 4 chr6 161122281 161122562 -28156992 + AluSx SINE Alu 1 288 -24 1199 270 133 29 chr6 161122562 161123127 -28156427 + L1MCc LINE L1 2091 3125 -3997 * 1616 289 27 12 chr6 161123122 161123848 -28155706 + L1MB7 LINE L1 2315 5909 -275 513 242 111 0 chr6 161123862 161124038 -28155516 + MER63 DNA MER1_type 12 1688 0 1102 281 53 0 chr6 161124038 161124454 -28155100 + L1MCc LINE L1 3769 4206 -2735 1935 165 12 57 chr6 161124460 161124625 -28154929 + MLT1B LTR MaLR 1 172 -218 2055 95 20 0 chr6 161124625 161124929 -28154625 + L1MA2 LINE L1 5995 6304 0 1935 165 12 57 chr6 161124929 161125169 -28154385 + MLT1B LTR MaLR 172 388 -2 1346 279 92 10 chr6 161125169 161125765 -28153789 + L1MCc LINE L1 4206 4850 -2091 419 198 49 0 chr6 161125841 161125922 -28153632 + L1MCc LINE L1 4856 4940 -2001 6431 152 17 0 chr6 161125977 161127107 -28152447 - L1MC1 LINE L1 0 6333 5186 327 259 309 15 chr6 161127348 161127549 -28152005 + MIR SINE MIR 3 262 0 189 296 70 28 chr6 161127938 161128009 -28151545 - MIR3 SINE MIR -43 165 92 908 93 0 0 chr6 161128033 161128151 -28151403 + AluSp SINE Alu 1 118 -195 1343 232 71 29 chr6 161128752 161129132 -28150422 + MSTD LTR MaLR 1 396 0 711 110 17 168 chr6 161129837 161130010 -28149544 + L1MC1 LINE L1 6033 6179 -154 216 298 35 7 chr6 161130061 161130202 -28149352 + (TA)n Simple_repeat Simple_repeat 1 145 0 313 311 49 30 chr6 161131117 161131281 -28148273 - MLT1L LTR MaLR -346 269 103 26 50 0 0 chr6 161133408 161133448 -28146106 + AT_rich Low_complexity Low_complexity 1 40 0 1212 251 101 81 chr6 161134521 161134976 -28144578 + MLT2B1 LTR ERVL 1 464 0 1358 249 46 0 chr6 161135289 161135576 -28143978 + MER58B DNA MER1_type 2 307 -2113 4194 68 0 7 chr6 161135576 161136123 -28143431 + L1PA7 LINE L1 5610 6152 -2 1358 249 46 0 chr6 161136123 161136160 -28143394 + MER58B DNA MER1_type 307 341 0 230 296 195 49 chr6 161136382 161136608 -28142946 + L2 LINE L2 2933 3191 -81 231 36 0 0 chr6 161137381 161137409 -28142145 + (CA)n Simple_repeat Simple_repeat 1 28 0 337 216 67 164 chr6 161137584 161137853 -28141701 + MER112 DNA MER1_type 18 260 0 452 249 26 28 chr6 161139176 161139324 -28140230 + MIR SINE MIR 42 187 -62 245 256 11 44 chr6 161139647 161139737 -28139817 + L2 LINE L2 3227 3313 0 205 93 93 0 chr6 161141150 161141193 -28138361 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2369 81 0 3 chr6 161141260 161141558 -28137996 + AluY SINE Alu 1 297 -14 601 96 0 32 chr6 161141559 161141653 -28137901 - L1MA1 LINE L1 -8 6294 6204 23 92 0 0 chr6 161141670 161141735 -28137819 + AT_rich Low_complexity Low_complexity 1 65 0 181 298 35 101 chr6 161142381 161142579 -28136975 + L2 LINE L2 2865 3049 -223 354 330 131 11 chr6 161142853 161143044 -28136510 + L2 LINE L2 3029 3242 -71 2303 194 84 29 chr6 161143088 161143575 -28135979 + MLT2B3 LTR ERVL 1 520 -34 605 37 0 12 chr6 161143575 161143656 -28135898 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 2303 194 84 29 chr6 161143656 161143693 -28135861 + MLT2B3 LTR ERVL 520 554 0 198 357 0 71 chr6 161143747 161143831 -28135723 - L2 LINE L2 -27 3245 3168 189 376 65 0 chr6 161144304 161144397 -28135157 + L2 LINE L2 3199 3297 -16 1217 233 17 53 chr6 161145042 161145454 -28134100 + MLT2C1 LTR ERVL 1 397 0 261 258 21 41 chr6 161146938 161147035 -28132519 - MIR SINE MIR -42 220 126 204 381 71 16 chr6 161148120 161148246 -28131308 + MIR SINE MIR 20 152 -110 223 273 0 15 chr6 161148594 161148660 -28130894 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 199 275 99 49 chr6 161149430 161149572 -28129982 - MIR SINE MIR -82 180 32 4540 101 28 48 chr6 161149787 161150693 -28128861 + L1PA14 LINE L1 5217 6161 0 236 261 45 23 chr6 161153780 161153868 -28125686 + MLT1J1 LTR MaLR 66 155 -291 373 290 58 68 chr6 161153915 161154072 -28125482 + MLT1J2 LTR MaLR 244 401 -49 2238 47 11 0 chr6 161154072 161154403 -28125151 - AluY SINE Alu 0 334 1 373 290 58 68 chr6 161154403 161154451 -28125103 + MLT1J2 LTR MaLR 401 448 -2 226 358 0 0 chr6 161154588 161154655 -28124899 - MIR SINE MIR -102 106 40 478 279 12 52 chr6 161154841 161155040 -28124514 - MIR SINE MIR -39 223 32 672 231 44 108 chr6 161155399 161155618 -28123936 + MIR SINE MIR 2 205 -57 1463 223 39 11 chr6 161155618 161155973 -28123581 + MLT1A1 LTR MaLR 1 365 0 672 231 44 108 chr6 161155973 161156004 -28123550 + MIR SINE MIR 205 236 -26 974 280 61 63 chr6 161156302 161156681 -28122873 + LTR16B LTR ERVL 87 464 0 1470 313 72 55 chr6 161156684 161157346 -28122208 + HERV16 LTR ERVL 4 654 -4342 1705 120 9 0 chr6 161157346 161157579 -28121975 - AluSp SINE Alu -76 237 3 1470 313 72 55 chr6 161157579 161158307 -28121247 + HERV16 LTR ERVL 654 1417 -3579 1439 335 71 13 chr6 161158509 161159126 -28120428 + HERV16 LTR ERVL 1854 2506 -2490 1996 137 80 34 chr6 161159132 161159520 -28120034 - L1MA10 LINE L1 -2 6332 5927 763 323 22 11 chr6 161159545 161159814 -28119740 + HERV16 LTR ERVL 2532 2803 -2193 454 214 17 17 chr6 161159925 161160042 -28119512 - MER103 DNA DNA -46 120 4 183 339 34 85 chr6 161160313 161160431 -28119123 + L2 LINE L2 3127 3238 -34 907 194 21 31 chr6 161160518 161160709 -28118845 - MER5A DNA MER1_type 0 189 1 2256 67 6 58 chr6 161160712 161161025 -28118529 + AluY SINE Alu 1 297 -14 397 276 41 24 chr6 161161249 161161372 -28118182 + MER94 DNA DNA 4 128 -6 662 267 186 5 chr6 161162263 161162484 -28117070 - MIR SINE MIR 0 262 2 502 296 111 39 chr6 161163097 161163665 -28115889 + L1ME3 LINE L1 5319 5927 -235 2150 285 89 12 chr6 161163697 161164504 -28115050 + L2 LINE L2 1848 2716 -598 444 201 188 0 chr6 161164505 161164649 -28114905 + MER112 DNA MER1_type 76 246 -14 225 316 167 26 chr6 161164855 161164969 -28114585 - MIR SINE MIR -118 144 15 376 293 82 75 chr6 161165959 161166277 -28113277 - L2 LINE L2 -38 3234 2915 323 373 0 7 chr6 161166511 161166653 -28112901 - L2 LINE L2 -671 2643 2503 534 385 52 48 chr6 161166793 161167425 -28112129 - L1MEd LINE L1 -5363 756 122 209 303 5 18 chr6 161167589 161167654 -28111900 + MIR SINE MIR 14 79 -129 195 300 14 29 chr6 161168329 161168399 -28111155 + L2 LINE L2 3204 3272 0 23 0 0 0 chr6 161169555 161169578 -28109976 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr6 161169624 161169653 -28109901 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr6 161170044 161170080 -28109474 + AT_rich Low_complexity Low_complexity 1 36 0 837 305 96 19 chr6 161170213 161170587 -28108967 + MLT1I LTR MaLR 4 406 -3 1614 161 0 95 chr6 161171039 161171375 -28108179 + AluSx SINE Alu 1 304 -8 814 306 91 8 chr6 161172334 161172687 -28106867 + MLT1I LTR MaLR 28 409 0 389 325 107 24 chr6 161172918 161173087 -28106467 + L3 LINE CR1 1389 1571 -6 270 268 72 21 chr6 161173652 161173749 -28105805 - MIR3 SINE MIR 0 208 107 970 266 51 79 chr6 161173882 161174314 -28105240 + MLT1J LTR MaLR 2 421 -90 197 321 49 25 chr6 161175724 161175805 -28103749 - L2 LINE L2 -6 3307 3225 1227 186 76 27 chr6 161177166 161177429 -28102125 - AluJb SINE Alu -8 304 29 2308 75 7 13 chr6 161177502 161177807 -28101747 + AluY SINE Alu 1 303 -8 265 159 0 0 chr6 161178594 161178638 -28100916 + L1MC3 LINE L1 7248 7291 -494 1585 89 78 14 chr6 161178638 161178957 -28100597 + Tigger4(Zombi) DNA MER2_type 2 2730 -1 2282 158 40 25 chr6 161178957 161179434 -28100120 + L1MC2 LINE L1 6138 7756 -11 245 304 14 0 chr6 161180403 161180472 -28099082 - MIR SINE MIR -148 114 45 272 373 48 8 chr6 161181002 161181128 -28098426 - L3 LINE CR1 -63 1514 1384 215 329 0 14 chr6 161181118 161181188 -28098366 - MIR SINE MIR -1 261 193 * 194 340 50 20 chr6 161181190 161181290 -28098264 - L2 LINE L2 -19 3294 3192 215 191 133 105 chr6 161181290 161181395 -28098159 - MIR SINE MIR -71 191 84 1131 203 52 0 chr6 161181627 161181738 -28097816 - AluJb SINE Alu -69 243 139 279 0 0 0 chr6 161181738 161181769 -28097785 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1131 203 52 0 chr6 161181769 161181869 -28097685 - AluJb SINE Alu -173 139 21 285 303 101 8 chr6 161181896 161182015 -28097539 + L2 LINE L2 3116 3245 -27 559 118 29 0 chr6 161182035 161182137 -28097417 + GA-rich Low_complexity Low_complexity 3 107 0 2052 156 80 60 chr6 161182537 161183037 -28096517 + MER67D LTR ERV1 1 510 -4 592 293 171 7 chr6 161185866 161186170 -28093384 - L2 LINE L2 -660 2654 2301 260 309 131 42 chr6 161187385 161187553 -28092001 + MIR SINE MIR 30 212 -50 248 254 141 70 chr6 161187829 161188313 -28091241 - L1ME4a LINE L1 -1 6120 5603 2311 102 0 0 chr6 161188315 161188610 -28090944 + AluSx SINE Alu 1 295 -17 392 363 61 8 chr6 161188712 161188974 -28090580 - L1ME4a LINE L1 -206 5915 5640 981 291 64 21 chr6 161189723 161190173 -28089381 + MLT1H LTR MaLR 28 532 -17 540 183 8 48 chr6 161190744 161190870 -28088684 - MER3 DNA MER1_type -2 207 87 * 2734 173 31 24 chr6 161190861 161191258 -28088296 - MER45R DNA AcHobo -77 1504 1100 2317 78 0 28 chr6 161191258 161191578 -28087976 + AluY SINE Alu 1 311 0 2734 173 31 24 chr6 161191578 161191794 -28087760 - MER45R DNA AcHobo -481 1100 887 443 238 0 0 chr6 161191783 161191863 -28087691 - MER3 DNA MER1_type -129 80 1 * 1520 227 39 85 chr6 161192891 161193253 -28086301 - L1ME1 LINE L1 -4 6162 5837 2029 119 0 31 chr6 161193253 161193546 -28086008 - AluSx SINE Alu 0 312 29 1520 227 39 85 chr6 161193546 161193781 -28085773 - L1ME1 LINE L1 -329 5837 5593 350 171 114 0 chr6 161194331 161194401 -28085153 + AluJo SINE Alu 66 143 -159 943 157 0 13 chr6 161194456 161194609 -28084945 + FRAM SINE Alu 18 168 -8 368 247 78 61 chr6 161194752 161194921 -28084633 + MER5B DNA MER1_type 3 188 -1 1833 210 45 62 chr6 161195163 161195677 -28083877 - MLT1D LTR MaLR 0 505 1 777 322 56 16 chr6 161196745 161197120 -28082434 - MLT1I LTR MaLR 0 409 3 21779 84 15 4 chr6 161197213 161201151 -28078403 - L1PA7 LINE L1 -14 6455 2478 4470 77 50 0 chr6 161201146 161201769 -28077785 - L1PA7 LINE L1 -5016 1445 792 * 338 73 0 18 chr6 161201769 161201824 -28077730 + (TTTTA)n Simple_repeat Simple_repeat 1 54 0 7018 31 8 2 chr6 161201824 161203271 -28076283 - L1PA4 LINE L1 -24 6131 4673 5353 108 2 34 chr6 161203270 161204086 -28075468 - L1PA7 LINE L1 -5671 790 1 * 26 50 0 0 chr6 161205057 161205097 -28074457 + AT_rich Low_complexity Low_complexity 1 40 0 3203 90 11 0 chr6 161205358 161205802 -28073752 + L1PA13 LINE L1 5713 6161 -2 1425 164 39 19 chr6 161206138 161206449 -28073105 - L1MC3 LINE L1 0 7785 7469 244 213 16 0 chr6 161207489 161207550 -28072004 + (CA)n Simple_repeat Simple_repeat 1 62 0 322 240 25 34 chr6 161207581 161207692 -28071862 + MIR SINE MIR 33 143 -65 1991 137 87 23 chr6 161208822 161209166 -28070388 - MER47A DNA MER2_type 0 366 1 1329 250 118 82 chr6 161211372 161211942 -28067612 - MLT1E2 LTR MaLR 0 624 8 519 207 40 20 chr6 161213001 161213151 -28066403 + L1MC3 LINE L1 7468 7620 -165 266 206 68 0 chr6 161213345 161213418 -28066136 - MER91C DNA MER1_type -32 108 31 183 229 62 0 chr6 161214879 161214927 -28064627 - MER5A DNA MER1_type -82 107 57 2509 124 3 3 chr6 161214972 161215336 -28064218 + THE1B LTR MaLR 1 364 0 891 238 133 50 chr6 161215436 161215856 -28063698 - LTR16A1 LTR ERVL -2 455 1 21 57 0 0 chr6 161216961 161216996 -28062558 + AT_rich Low_complexity Low_complexity 1 35 0 520 289 38 43 chr6 161217090 161217325 -28062229 + L1ME LINE L1 5460 5693 -428 638 107 0 0 chr6 161219624 161219708 -28059846 + 5S rRNA rRNA 7 90 -31 2321 110 0 0 chr6 161219734 161220042 -28059512 - AluSg SINE Alu -2 308 1 513 343 21 26 chr6 161221685 161221918 -28057636 + MIR SINE MIR 14 245 -17 4590 200 60 108 chr6 161221975 161222881 -28056673 - L1MC3 LINE L1 -1 7784 6874 603 118 10 39 chr6 161222881 161222983 -28056571 - AluSg/x SINE Alu -28 281 183 4590 200 60 108 chr6 161222983 161223513 -28056041 - L1MC3 LINE L1 -911 6874 6320 2239 119 3 0 chr6 161223997 161224309 -28055245 - AluSp SINE Alu 0 313 1 181 296 19 0 chr6 161226489 161226543 -28053011 + MIR SINE MIR 42 96 -166 576 232 177 0 chr6 161226637 161226874 -28052680 + L1M4 LINE L1 4229 4507 -1639 532 233 42 0 chr6 161226884 161227004 -28052550 + L1ME3 LINE L1 6037 6161 -1 193 267 50 0 chr6 161228137 161228197 -28051357 + MIR SINE MIR 124 186 -76 2214 61 0 51 chr6 161228243 161228579 -28050975 - AluY SINE Alu 0 321 1 522 310 50 58 chr6 161228604 161228968 -28050586 + L2 LINE L2 2945 3305 -8 270 269 0 0 chr6 161229031 161229098 -28050456 + (TA)n Simple_repeat Simple_repeat 1 67 0 383 278 103 8 chr6 161232620 161232746 -28046808 - MIR SINE MIR -65 197 60 2042 138 0 7 chr6 161232841 161233130 -28046424 - AluSx SINE Alu -25 287 1 183 42 0 0 chr6 161234862 161234886 -28044668 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 292 309 64 0 chr6 161234891 161235001 -28044553 + MER117 DNA MER1_type 1 117 -80 1690 222 22 17 chr6 161235427 161235788 -28043766 - MLT1A1 LTR MaLR 0 365 3 234 200 0 17 chr6 161236012 161236072 -28043482 - L1MA9 LINE L1 -53 6259 6201 224 257 81 27 chr6 161237620 161237694 -28041860 + L3 LINE CR1 1496 1573 -4 24 53 0 0 chr6 161239505 161239543 -28040011 + AT_rich Low_complexity Low_complexity 1 38 0 343 269 175 6 chr6 161239623 161239783 -28039771 - LTR33A LTR ERVL -8 515 329 357 277 134 0 chr6 161239817 161239929 -28039625 - LTR33A LTR ERVL -339 184 58 191 167 0 21 chr6 161240677 161240725 -28038829 + GA-rich Low_complexity Low_complexity 4 50 0 588 259 6 24 chr6 161240799 161240965 -28038589 - MIR SINE MIR -49 213 51 218 196 0 22 chr6 161241245 161241291 -28038263 + CT-rich Low_complexity Low_complexity 5 49 0 2222 80 48 0 chr6 161241596 161241885 -28037669 + AluY SINE Alu 1 303 -8 201 226 0 0 chr6 161242764 161242817 -28036737 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 361 280 113 76 chr6 161243834 161244109 -28035445 - L1MC4 LINE L1 0 8042 7758 584 305 187 3 chr6 161244829 161245015 -28034539 + L2 LINE L2 2904 3054 -259 572 269 48 0 chr6 161245015 161245182 -28034372 - MER96 DNA MER1_type 0 175 1 584 305 187 3 chr6 161245182 161245310 -28034244 + L2 LINE L2 3054 3276 -37 279 93 0 0 chr6 161245344 161245387 -28034167 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 2788 141 11 2 chr6 161245403 161245872 -28033682 - L1MA4 LINE L1 -6 6294 5822 14317 189 27 9 chr6 161245872 161246623 -28032931 - L1MA4 LINE L1 -764 5382 4646 2398 157 53 13 chr6 161246623 161247093 -28032461 - L1PA16 LINE L1 0 6166 5678 14317 189 27 9 chr6 161247093 161249352 -28030202 - L1MA4 LINE L1 -1500 4646 2317 462 209 25 86 chr6 161249477 161249640 -28029914 + L2 LINE L2 3161 3313 0 384 320 74 0 chr6 161250265 161250387 -28029167 - L2 LINE L2 -1 3271 3141 15054 157 23 15 chr6 161250526 161252416 -28027138 - L1MA1 LINE L1 0 7721 5848 1978 144 109 28 chr6 161252416 161252812 -28026742 - MSTA LTR MaLR 0 428 1 15054 157 23 15 chr6 161252812 161255987 -28023567 - L1MA1 LINE L1 -1873 5848 2635 2338 108 13 53 chr6 161255987 161256366 -28023188 + THE1B LTR MaLR 1 364 0 9126 106 40 86 chr6 161256366 161258000 -28021554 + THE1B-int LTR MaLR 1 1559 -21 1730 124 64 21 chr6 161258000 161258282 -28021272 + THE1B LTR MaLR 71 364 0 13091 183 39 33 chr6 161258282 161260889 -28018665 - L1MA1 LINE L1 -4926 2639 18 21 0 0 0 chr6 161261068 161261089 -28018465 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 161261444 161261468 -28018086 + AT_rich Low_complexity Low_complexity 1 24 0 193 228 106 114 chr6 161261974 161262097 -28017457 - L2 LINE L2 -5 3267 3146 3765 274 56 63 chr6 161263026 161265366 -28014188 + L1MEc LINE L1 37 2360 -4036 207 360 125 7 chr6 161266521 161266657 -28012897 - L2 LINE L2 -14 3299 3148 25 51 0 0 chr6 161266718 161266757 -28012797 + AT_rich Low_complexity Low_complexity 1 39 0 300 289 62 23 chr6 161267394 161267522 -28012032 - MIR3 SINE MIR -45 163 31 272 280 53 13 chr6 161267982 161268057 -28011497 + L2 LINE L2 3195 3272 0 413 336 94 40 chr6 161269889 161270166 -28009388 - L2 LINE L2 -1 3271 2980 223 195 0 0 chr6 161270897 161270938 -28008616 + A-rich Low_complexity Low_complexity 1 41 0 6649 73 19 0 chr6 161271734 161272803 -28006751 - L1PA7 LINE L1 0 6154 5078 4189 87 3 2 chr6 161272810 161273418 -28006136 + L1PA7 LINE L1 4487 5095 -1051 398 121 30 10 chr6 161275244 161275343 -28004211 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 188 130 0 58 chr6 161275787 161275856 -28003698 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 2422 73 26 0 chr6 161276399 161276702 -28002852 + AluY SINE Alu 1 311 0 371 119 15 0 chr6 161278919 161278986 -28000568 + (TC)n Simple_repeat Simple_repeat 1 68 0 24 0 0 0 chr6 161279597 161279621 -27999933 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr6 161279964 161279992 -27999562 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr6 161280093 161280133 -27999421 + AT_rich Low_complexity Low_complexity 1 40 0 266 283 64 0 chr6 161280939 161281035 -27998519 + MER5B DNA MER1_type 83 174 -4 1187 119 65 0 chr6 161283018 161283219 -27996335 - L1MA5 LINE L1 -2 6298 6085 348 339 127 40 chr6 161284060 161284643 -27994911 - L2 LINE L2 -672 2642 2004 1021 205 40 105 chr6 161284643 161284891 -27994663 - MLT1A2 LTR MaLR 0 374 160 228 35 0 0 chr6 161284891 161284920 -27994634 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1021 205 40 105 chr6 161284920 161285071 -27994483 - MLT1A2 LTR MaLR -214 160 1 348 339 127 40 chr6 161285071 161285086 -27994468 - L2 LINE L2 -1310 2004 1992 2120 135 0 16 chr6 161285745 161286063 -27993491 + AluSq SINE Alu 1 313 0 548 262 79 71 chr6 161287107 161287160 -27992394 + MIR SINE MIR 1 52 -210 1613 190 33 33 chr6 161287160 161287523 -27992031 - MLT1A1 LTR MaLR -2 363 1 548 262 79 71 chr6 161287523 161287721 -27991833 + MIR SINE MIR 52 254 -8 302 65 0 22 chr6 161288745 161288791 -27990763 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 223 316 34 80 chr6 161289761 161289998 -27989556 - L2 LINE L2 -159 3113 2888 415 351 65 42 chr6 161290189 161290895 -27988659 - L2 LINE L2 0 3272 2553 943 333 89 30 chr6 161292058 161292754 -27986800 - HAL1b LINE L1 -513 835 99 2798 221 71 40 chr6 161292770 161293576 -27985978 - L1ME2 LINE L1 -9 6224 5444 2220 71 4 0 chr6 161293576 161293900 -27985654 - AluY SINE Alu 0 325 1 2798 221 71 40 chr6 161293900 161294233 -27985321 - L1ME2 LINE L1 -789 5444 5123 1304 226 48 25 chr6 161294233 161294587 -27984967 - MLT1A1 LTR MaLR 0 365 4 2798 221 71 40 chr6 161294587 161294880 -27984674 - L1ME2 LINE L1 -1110 5123 4742 386 290 89 9 chr6 161294913 161295137 -27984417 - L1ME2 LINE L1 -2099 4116 3875 524 241 42 100 chr6 161295175 161295786 -27983768 - L1ME2 LINE L1 -3788 2466 1879 227 224 30 30 chr6 161296502 161296569 -27982985 - L1ME2 LINE L1 -6298 98 32 34 65 0 0 chr6 161297539 161297601 -27981953 + AT_rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chr6 161297750 161297780 -27981774 + AT_rich Low_complexity Low_complexity 1 30 0 40 21 0 0 chr6 161297801 161297848 -27981706 + AT_rich Low_complexity Low_complexity 1 47 0 291 276 49 16 chr6 161297978 161298101 -27981453 - MER94 DNA DNA 0 134 8 1823 156 110 18 chr6 161298728 161299118 -27980436 - MSTA LTR MaLR 0 428 3 754 262 22 19 chr6 161299884 161300161 -27979393 + L1MC5 LINE L1 6977 7252 -727 269 256 175 12 chr6 161300267 161300501 -27979053 + L1ME LINE L1 5522 5766 -355 286 227 8 38 chr6 161302092 161302224 -27977330 + GA-rich Low_complexity Low_complexity 3 130 0 2976 282 76 12 chr6 161302992 161303888 -27975666 - MER45C DNA AcHobo 0 953 1 207 0 0 0 chr6 161310780 161310803 -27968751 + (TTG)n Simple_repeat Simple_repeat 2 24 0 306 0 0 0 chr6 161312724 161312758 -27966796 + (TG)n Simple_repeat Simple_repeat 2 35 0 216 204 20 0 chr6 161312759 161312808 -27966746 + GA-rich Low_complexity Low_complexity 2 51 0 246 62 0 0 chr6 161314116 161314148 -27965406 + (CTG)n Simple_repeat Simple_repeat 3 34 0 21 36 0 0 chr6 161316773 161316801 -27962753 + AT_rich Low_complexity Low_complexity 1 28 0 218 254 0 42 chr6 161317554 161317625 -27961929 + A-rich Low_complexity Low_complexity 5 72 0 214 245 20 0 chr6 161318245 161318294 -27961260 - L3 LINE CR1 -229 1348 1299 287 311 0 0 chr6 161318759 161318833 -27960721 - L3 LINE CR1 -9 1568 1495 797 333 171 10 chr6 161319207 161319705 -27959849 - L3 LINE CR1 -111 1466 889 1099 257 39 32 chr6 161319732 161320144 -27959410 - LTR16C LTR ERVL -2 489 75 214 211 0 35 chr6 161320230 161320287 -27959267 + GA-rich Low_complexity Low_complexity 1 55 0 397 110 24 85 chr6 161320704 161320786 -27958768 + MADE1 DNA Mariner 1 77 -3 837 188 12 12 chr6 161321076 161321236 -27958318 + AluJo SINE Alu 104 263 -49 458 82 0 27 chr6 161321274 161321347 -27958207 + (GGGAA)n Simple_repeat Simple_repeat 1 71 0 221 147 0 0 chr6 161321347 161321381 -27958173 + (GGAGAA)n Simple_repeat Simple_repeat 5 38 0 235 257 14 0 chr6 161321988 161322062 -27957492 - L1ME LINE L1 -312 5809 5735 28 48 0 0 chr6 161322154 161322196 -27957358 + AT_rich Low_complexity Low_complexity 1 42 0 357 250 265 0 chr6 161322237 161322373 -27957181 - MIR SINE MIR -89 173 2 254 356 10 19 chr6 161323084 161323188 -27956366 + MIR SINE MIR 42 144 -64 318 87 0 0 chr6 161323353 161323399 -27956155 + (GGGGA)n Simple_repeat Simple_repeat 5 50 0 324 271 17 77 chr6 161323497 161323678 -27955876 - MLT1J2 LTR MaLR -216 234 65 327 297 0 0 chr6 161323740 161323814 -27955740 - MIR SINE MIR -118 144 71 31 44 0 0 chr6 161324261 161324306 -27955248 + AT_rich Low_complexity Low_complexity 1 45 0 29 0 0 0 chr6 161325294 161325323 -27954231 + AT_rich Low_complexity Low_complexity 1 29 0 333 310 46 40 chr6 161325977 161326151 -27953403 - MER5B DNA MER1_type -3 175 1 2252 126 19 25 chr6 161326639 161327005 -27952549 - THE1B LTR MaLR 0 364 1 11078 92 25 14 chr6 161327005 161328568 -27950986 - THE1B-int LTR MaLR 0 1580 1 2204 128 19 25 chr6 161328568 161328934 -27950620 - THE1B LTR MaLR 0 364 1 245 344 0 11 chr6 161328944 161329037 -27950517 - L2 LINE L2 -1 3271 3180 24 53 0 0 chr6 161329509 161329547 -27950007 + AT_rich Low_complexity Low_complexity 1 38 0 182 119 0 48 chr6 161329555 161329597 -27949957 - MIR SINE MIR -73 189 150 230 203 14 0 chr6 161329597 161329666 -27949888 - L1MA4A LINE L1 -1 6302 6233 2566 100 60 21 chr6 161329669 161330100 -27949454 - LTR7 LTR ERV1 -2 448 1 2383 71 45 16 chr6 161330100 161330479 -27949075 - HERVH LTR ERV1 0 7713 7324 1274 134 18 5 chr6 161330479 161330696 -27948858 - HERVH LTR ERV1 -1894 5819 5600 2889 135 3 4 chr6 161330697 161331314 -27948240 - HERVH LTR ERV1 -2564 5149 4488 3076 121 4 6 chr6 161331316 161331819 -27947735 - HERVH LTR ERV1 -3720 3993 3492 775 169 20 0 chr6 161331809 161331957 -27947597 - HERVH LTR ERV1 -4423 3290 3140 * 16154 110 17 15 chr6 161331951 161335234 -27944320 - HERVH LTR ERV1 -4726 2987 1 2621 97 58 21 chr6 161335236 161335668 -27943886 - LTR7 LTR ERV1 -2 448 1 12974 198 38 16 chr6 161335668 161341582 -27937972 - L1MA4 LINE L1 -67 6415 368 324 305 28 0 chr6 161341599 161341740 -27937814 + MER103 DNA DNA 20 164 -2 644 263 50 0 chr6 161342060 161342220 -27937334 - MER5B DNA MER1_type -10 168 1 428 328 115 4 chr6 161342457 161342588 -27936966 + MIR SINE MIR 2 117 -145 185 0 40 0 chr6 161342588 161342613 -27936941 + (TAA)n Simple_repeat Simple_repeat 1 26 0 428 328 115 4 chr6 161342613 161342716 -27936838 + MIR SINE MIR 117 262 0 632 152 152 28 chr6 161342902 161343047 -27936507 + MER5B DNA MER1_type 10 172 -6 304 313 9 36 chr6 161343108 161343220 -27936334 + CT-rich Low_complexity Low_complexity 2 110 0 278 315 54 40 chr6 161343657 161343806 -27935748 - MIR SINE MIR -62 146 40 185 300 83 0 chr6 161344780 161344840 -27934714 + L2 LINE L2 3249 3313 0 2250 78 0 26 chr6 161345361 161345669 -27933885 - AluY SINE Alu -11 300 1 262 257 104 61 chr6 161345754 161346041 -27933513 + L1MC5 LINE L1 7363 7683 -278 1273 231 47 41 chr6 161346041 161346404 -27933150 - MLT1A1 LTR MaLR 0 365 1 262 257 104 61 chr6 161346404 161346626 -27932928 + L1MC5 LINE L1 7683 7894 -67 189 242 48 32 chr6 161348068 161348130 -27931424 - MIR3 SINE MIR -6 202 140 441 324 29 6 chr6 161348137 161348307 -27931247 - MIR SINE MIR -2 260 87 716 287 129 26 chr6 161348320 161348630 -27930924 + MLT1K LTR MaLR 12 353 -235 205 268 52 0 chr6 161348791 161348858 -27930696 - MIR SINE MIR -94 114 40 542 284 16 11 chr6 161348949 161349132 -27930422 - LTR16A1 LTR ERVL 0 457 274 256 308 103 17 chr6 161349600 161349717 -27929837 + MIR SINE MIR 103 229 -33 1431 174 118 50 chr6 161349736 161350099 -27929455 + MLT1B LTR MaLR 3 390 0 1112 216 12 49 chr6 161351436 161351764 -27927790 + MLT2C1 LTR ERVL 1 316 -81 321 253 0 33 chr6 161351765 161351856 -27927698 - L1MC4 LINE L1 -1339 6703 6616 845 252 112 14 chr6 161351935 161352538 -27927016 - LTR50 LTR ERVL -43 752 5 219 308 58 64 chr6 161353217 161353373 -27926181 + L2 LINE L2 2896 3050 -222 232 354 49 12 chr6 161353389 161353471 -27926083 - MER91C DNA MER1_type -31 109 25 676 92 28 0 chr6 161353512 161353621 -27925933 + (TCTA)n Simple_repeat Simple_repeat 1 112 0 1006 228 59 48 chr6 161353640 161353821 -27925733 - MLT1B LTR MaLR -29 361 184 183 42 0 0 chr6 161353821 161353845 -27925709 + (GA)n Simple_repeat Simple_repeat 1 24 0 1006 228 59 48 chr6 161353845 161354019 -27925535 - MLT1B LTR MaLR -206 184 2 234 81 0 0 chr6 161354019 161354056 -27925498 + (TC)n Simple_repeat Simple_repeat 2 38 0 2209 244 38 24 chr6 161354066 161355240 -27924314 - L1M2 LINE L1 -4404 2703 1508 293 298 58 41 chr6 161355472 161355643 -27923911 - MLT1K LTR MaLR -19 569 396 2012 113 0 0 chr6 161356538 161356804 -27922750 + AluSx SINE Alu 33 298 -14 5911 111 10 17 chr6 161357400 161358662 -27920892 - L1PA15 LINE L1 -4 6161 4906 2334 132 3 40 chr6 161358662 161359040 -27920514 + THE1B LTR MaLR 1 364 0 5911 111 10 17 chr6 161359040 161359673 -27919881 - L1PA15 LINE L1 -1259 4906 4270 494 169 0 0 chr6 161359673 161359762 -27919792 + L1PA15 LINE L1 4171 4259 -1887 22 0 0 0 chr6 161359763 161359785 -27919769 + AT_rich Low_complexity Low_complexity 1 22 0 1780 188 13 7 chr6 161360006 161360315 -27919239 + AluJb SINE Alu 1 311 -1 32 0 0 0 chr6 161360550 161360582 -27918972 + AT_rich Low_complexity Low_complexity 1 32 0 438 183 29 67 chr6 161360625 161360729 -27918825 - AluJo SINE Alu -93 219 120 299 155 17 0 chr6 161361268 161361326 -27918228 - LTR9 LTR ERV1 -83 529 471 523 236 0 0 chr6 161361934 161362044 -27917510 - FLAM_A SINE Alu -5 137 28 809 238 12 0 chr6 161362052 161362212 -27917342 - FAM SINE Alu -12 163 2 860 199 133 65 chr6 161362506 161362873 -27916681 - MSTD LTR MaLR -2 394 3 866 184 128 20 chr6 161362940 161363190 -27916364 + LTR12 LTR ERV1 1 277 -437 288 234 0 0 chr6 161363190 161363267 -27916287 + LTR30 LTR ERV1 544 620 -102 662 152 0 0 chr6 161363267 161363372 -27916182 + LTR12 LTR ERV1 355 459 -255 480 303 117 11 chr6 161364591 161364779 -27914775 + MIR SINE MIR 13 220 -42 1552 284 125 15 chr6 161365108 161365999 -27913555 - L1MC4 LINE L1 -320 7722 6734 240 300 20 0 chr6 161366064 161366164 -27913390 - L1MC4 LINE L1 -1481 6561 6460 242 250 33 0 chr6 161366262 161366322 -27913232 + GA-rich Low_complexity Low_complexity 3 64 0 201 294 0 0 chr6 161366995 161367046 -27912508 + L2 LINE L2 3263 3313 0 21 0 0 0 chr6 161367900 161367921 -27911633 + AT_rich Low_complexity Low_complexity 1 21 0 224 273 0 0 chr6 161368452 161368507 -27911047 + CT-rich Low_complexity Low_complexity 2 56 0 641 224 6 43 chr6 161369703 161369864 -27909690 + MIR SINE MIR 61 215 -47 22 35 0 0 chr6 161370109 161370138 -27909416 + AT_rich Low_complexity Low_complexity 1 29 0 327 231 55 0 chr6 161371030 161371121 -27908433 + L1MC/D LINE L1 2232 2327 -3819 477 243 107 12 chr6 161371170 161371424 -27908130 + L1MC/D LINE L1 5254 5529 -637 305 259 0 25 chr6 161371594 161371675 -27907879 - L1MC4 LINE L1 -1350 6692 6614 300 297 0 0 chr6 161371611 161371722 -27907832 + (TA)n Simple_repeat Simple_repeat 1 111 0 * 1115 256 51 14 chr6 161372379 161372731 -27906823 - MLT1A1 LTR MaLR 0 365 1 225 0 0 0 chr6 161373050 161373075 -27906479 + (CA)n Simple_repeat Simple_repeat 2 26 0 329 100 0 17 chr6 161373282 161373342 -27906212 + (GA)n Simple_repeat Simple_repeat 2 60 0 387 0 0 0 chr6 161373427 161373470 -27906084 + (TG)n Simple_repeat Simple_repeat 1 43 0 1666 163 185 11 chr6 161373913 161374276 -27905278 + MSTA LTR MaLR 1 426 -2 1181 139 81 4 chr6 161374518 161374776 -27904778 - L1MC3 LINE L1 -1 7784 7507 744 251 18 6 chr6 161374869 161375032 -27904522 - MIR SINE MIR -64 198 34 1306 279 24 24 chr6 161375322 161375735 -27903819 - LTR47B LTR ERVL 0 443 31 321 325 65 0 chr6 161375879 161376002 -27903552 + MIR SINE MIR 88 218 -44 2123 129 7 0 chr6 161376827 161377122 -27902432 - AluSx SINE Alu -15 297 1 221 290 48 0 chr6 161378463 161378525 -27901029 - L2 LINE L2 -1 3271 3207 305 222 243 24 chr6 161378697 161378839 -27900715 - MIR SINE MIR -17 245 74 266 336 114 38 chr6 161378854 161379300 -27900254 + L2 LINE L2 2093 2572 -742 3192 84 5 0 chr6 161379422 161379852 -27899702 + LTR3 LTR ERVK 1 432 0 203 351 26 0 chr6 161379965 161380042 -27899512 + L2 LINE L2 2939 3017 -255 550 184 0 0 chr6 161380048 161380157 -27899397 + L1MB1 LINE L1 6006 6114 -75 1996 53 0 0 chr6 161380167 161380412 -27899142 - L1PA3 LINE L1 -1 6154 5910 7657 21 0 2 chr6 161380412 161381394 -27898160 + L1P LINE L1 4445 5425 -730 921 144 39 52 chr6 161381397 161381626 -27897928 + L1MA10 LINE L1 6103 6328 -6 328 307 47 16 chr6 161381754 161381881 -27897673 + L2 LINE L2 3177 3307 -6 461 219 26 0 chr6 161382004 161382118 -27897436 - MER53 DNA DNA -67 122 6 422 283 0 0 chr6 161382473 161382572 -27896982 - L3 LINE CR1 -150 1427 1329 318 342 43 0 chr6 161382577 161382694 -27896860 + L2 LINE L2 3187 3308 -5 401 319 14 7 chr6 161382708 161382849 -27896705 - L3 LINE CR1 -263 1314 1173 191 222 0 0 chr6 161382856 161382892 -27896662 + L2 LINE L2 3222 3257 -15 22 0 0 0 chr6 161383297 161383319 -27896235 + AT_rich Low_complexity Low_complexity 1 22 0 491 0 13 51 chr6 161383389 161383467 -27896087 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 184 309 0 86 chr6 161388001 161388082 -27891472 + MIR SINE MIR 66 139 -123 916 157 6 12 chr6 161388300 161388466 -27891088 - L1PA15 LINE L1 -1 6164 6000 7090 68 8 0 chr6 161388675 161390393 -27889161 - L1PA6 LINE L1 0 6154 4426 1029 83 0 0 chr6 161390429 161390573 -27888981 - L1PA6 LINE L1 -2311 3835 3692 * 2105 60 3 0 chr6 161390570 161390854 -27888700 - L1P LINE L1 -1712 4434 4150 17626 126 7 15 chr6 161390954 161393873 -27885681 - L1P LINE L1 -3239 2907 11 266 342 107 40 chr6 161393987 161394212 -27885342 - L2 LINE L2 -188 3084 2845 1112 270 140 84 chr6 161394835 161394964 -27884590 - L2 LINE L2 -9 3304 3184 282 116 0 0 chr6 161394964 161395007 -27884547 + (CATA)n Simple_repeat Simple_repeat 1 43 0 1112 270 140 84 chr6 161395007 161395914 -27883640 - L2 LINE L2 -129 3184 2189 204 67 0 0 chr6 161396881 161396911 -27882643 + (CA)n Simple_repeat Simple_repeat 2 31 0 216 329 41 71 chr6 161396918 161397088 -27882466 + L2 LINE L2 2895 3059 -213 18191 55 2 1 chr6 161397454 161400575 -27878979 - L1PA5 LINE L1 0 6154 3034 6275 25 0 2 chr6 161400764 161401575 -27877979 + L1HS LINE L1 5211 6020 -135 300 27 0 0 chr6 161401639 161401676 -27877878 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2416 104 0 0 chr6 161401806 161402115 -27877439 + AluSc SINE Alu 1 309 0 485 289 77 29 chr6 161402563 161402771 -27876783 + L2 LINE L2 3093 3310 -3 1123 172 0 48 chr6 161402974 161403201 -27876353 + MER20 DNA MER1_type 4 219 0 348 327 26 7 chr6 161403613 161403766 -27875788 + MLT1J2 LTR MaLR 266 421 -29 196 309 99 12 chr6 161403811 161403892 -27875662 + L2 LINE L2 3211 3298 -15 3079 109 17 2 chr6 161404002 161404470 -27875084 + LOR1a LTR ERV1 1 475 -22 510 329 123 5 chr6 161404887 161405106 -27874448 + MIR SINE MIR 4 248 -14 1176 118 6 0 chr6 161405194 161405355 -27874199 - AluSc SINE Alu -13 296 135 1337 167 20 0 chr6 161406485 161406736 -27872818 + L1MB1 LINE L1 5817 6072 -117 23 0 0 0 chr6 161406773 161406796 -27872758 + AT_rich Low_complexity Low_complexity 1 23 0 311 295 36 67 chr6 161406800 161407024 -27872530 + HAL1 LINE L1 4 220 -2287 2288 115 20 0 chr6 161407064 161407413 -27872141 - THE1B LTR MaLR -8 356 1 812 259 102 68 chr6 161407635 161408241 -27871313 + HAL1 LINE L1 482 1108 -1399 1267 294 110 14 chr6 161408711 161409377 -27870177 + HAL1 LINE L1 1188 1917 -590 404 192 40 0 chr6 161409584 161409682 -27869872 + MLT2D LTR ERVL 10 111 -303 962 208 89 22 chr6 161409682 161410014 -27869540 - MSTD LTR MaLR 0 396 1 * 1155 173 38 87 chr6 161410014 161410314 -27869240 + MLT2D LTR ERVL 107 483 -37 342 0 0 0 chr6 161410314 161410352 -27869202 + (CA)n Simple_repeat Simple_repeat 2 39 0 1155 173 38 87 chr6 161410352 161410389 -27869165 + MLT2D LTR ERVL 483 520 0 328 264 67 54 chr6 161410392 161410665 -27868889 - L1MC/D LINE L1 -738 5553 5338 1496 272 108 33 chr6 161410687 161411732 -27867822 - L1ME3A LINE L1 -8 6162 5039 782 187 18 12 chr6 161411752 161411923 -27867631 + MER3 DNA MER1_type 20 191 -18 895 247 52 0 chr6 161411981 161412289 -27867265 + L1M3 LINE L1 2781 3104 -3042 4839 243 48 45 chr6 161412293 161414337 -27865217 + L1M3 LINE L1 3390 5436 -783 * 7016 210 57 14 chr6 161414334 161416108 -27863446 + L1MC3 LINE L1 5928 7777 -8 350 252 101 0 chr6 161416116 161416235 -27863319 + L1M4 LINE L1 4037 4167 -1979 23 0 0 0 chr6 161416339 161416362 -27863192 + AT_rich Low_complexity Low_complexity 1 23 0 703 314 43 2 chr6 161416402 161416825 -27862729 + L1M4 LINE L1 4480 4919 -1227 276 305 71 46 chr6 161416968 161417165 -27862389 + L2 LINE L2 3108 3309 -4 244 261 155 63 chr6 161417622 161417764 -27861790 + MER5A DNA MER1_type 35 189 0 1927 150 57 28 chr6 161417784 161418324 -27861230 - MLT2A2 LTR ERVL 0 554 1 504 209 44 0 chr6 161418335 161418426 -27861128 + MER5A DNA MER1_type 12 106 -83 1902 153 65 0 chr6 161418475 161418828 -27860726 - L1MB1 LINE L1 -4 6164 5789 1586 177 3 7 chr6 161418850 161419155 -27860399 + L1M3 LINE L1 5484 5787 -381 439 174 311 0 chr6 161419210 161419342 -27860212 + MER5A DNA MER1_type 16 188 -1 439 142 53 80 chr6 161420154 161420267 -27859287 - L1MA9 LINE L1 -44 6268 6159 1055 154 22 11 chr6 161420277 161420459 -27859095 - AluJb SINE Alu 0 312 129 2093 161 63 74 chr6 161420465 161420658 -27858896 - L1MA9 LINE L1 -159 6153 5959 252 0 0 0 chr6 161420658 161420686 -27858868 + (TG)n Simple_repeat Simple_repeat 2 29 0 2093 161 63 74 chr6 161420686 161421033 -27858521 - L1MA9 LINE L1 -353 5959 5619 1340 172 48 39 chr6 161421031 161421570 -27857984 + L1MA9 LINE L1 5070 5616 -696 * 325 269 140 101 chr6 161421729 161422384 -27857170 - L1M2 LINE L1 -5442 1407 548 284 340 40 10 chr6 161422878 161422978 -27856576 - MIR SINE MIR -82 126 24 22 0 0 0 chr6 161423159 161423181 -27856373 + GC_rich Low_complexity Low_complexity 1 22 0 1799 145 20 10 chr6 161423351 161423473 -27856081 + AluJo SINE Alu 1 120 -192 276 30 0 0 chr6 161423473 161423506 -27856048 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1799 145 20 10 chr6 161423506 161423679 -27855875 + AluJo SINE Alu 120 299 -13 260 219 161 52 chr6 161423741 161423896 -27855658 - MIR3 SINE MIR -14 194 23 198 0 0 0 chr6 161425174 161425196 -27854358 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr6 161426337 161426359 -27853195 + AT_rich Low_complexity Low_complexity 1 22 0 252 343 95 0 chr6 161426992 161427097 -27852457 + MIR SINE MIR 34 148 -60 1861 143 3 30 chr6 161428760 161429061 -27850493 + AluJb SINE Alu 3 295 -17 200 214 0 0 chr6 161429290 161429332 -27850222 + (TATG)n Simple_repeat Simple_repeat 1 42 0 1029 188 0 0 chr6 161429729 161429899 -27849655 - AluJb SINE Alu -125 187 18 1321 219 127 55 chr6 161430822 161431457 -27848097 + L1MC4a LINE L1 6203 6790 -1019 528 63 0 13 chr6 161431457 161431536 -27848018 - L1PA2 LINE L1 0 6155 6078 1321 219 127 55 chr6 161431536 161432226 -27847328 + L1MC4a LINE L1 6790 7807 -2 662 486 149 0 chr6 161433477 161433732 -27845822 + AluY SINE Alu 1 293 -8 407 266 136 40 chr6 161433825 161434126 -27845428 + L1MC/D LINE L1 4904 5233 -913 2299 184 63 6 chr6 161434449 161434927 -27844627 - MER67C LTR ERV1 -3 707 203 923 50 8 0 chr6 161434975 161435094 -27844460 - L1PA4 LINE L1 -3 6152 6033 7292 44 7 3 chr6 161435121 161436038 -27843516 + L1P LINE L1 1357 2276 -3870 619 138 64 128 chr6 161436038 161436226 -27843328 - MER67C LTR ERV1 -533 177 2 292 237 7 89 chr6 161436269 161436404 -27843150 + L1MC/D LINE L1 5689 5812 -1996 2246 140 18 27 chr6 161487709 161488194 -27791360 - MER34B LTR ERV1 -30 535 1 227 205 134 6 chr6 161488448 161488534 -27791020 - MIR SINE MIR -64 144 94 195 351 43 11 chr6 161489670 161489764 -27789790 + MIR SINE MIR 29 125 -137 1289 317 102 25 chr6 161489923 161490640 -27788914 + L2 LINE L2 1734 2505 -809 736 325 69 55 chr6 161490855 161491580 -27787974 + L2 LINE L2 2567 3313 0 361 333 197 23 chr6 161491838 161492626 -27786928 - L2 LINE L2 -452 2862 1938 9989 185 28 17 chr6 161493451 161494536 -27785018 + L1MA6 LINE L1 3358 4430 -3135 663 0 35 0 chr6 161494536 161494623 -27784931 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 9989 185 28 17 chr6 161494623 161495889 -27783665 + L1MA6 LINE L1 4430 5742 -1823 846 153 0 0 chr6 161495891 161496015 -27783539 + FLAM_C SINE Alu 1 124 -19 25 0 0 0 chr6 161496015 161496040 -27783514 + AT_rich Low_complexity Low_complexity 1 25 0 3878 165 34 3 chr6 161496040 161496780 -27782774 + L1MA6 LINE L1 5732 6494 -1071 1706 188 0 10 chr6 161496792 161497096 -27782458 - AluJb SINE Alu -11 301 1 2342 152 7 9 chr6 161497116 161497551 -27782003 - L1 LINE L1 -1316 4830 4397 4608 169 79 9 chr6 161497554 161498669 -27780885 + L1MA6 LINE L1 6531 7718 -1 1549 210 18 0 chr6 161498688 161499022 -27780532 + L1 LINE L1 4820 5159 -987 2120 35 0 4 chr6 161499761 161500022 -27779532 - L1PA4 LINE L1 -3 6152 5893 1384 18 0 6 chr6 161500022 161500189 -27779365 + L1PA4 LINE L1 5733 5898 -257 6712 56 5 0 chr6 161500936 161501871 -27777683 - L1PA7 LINE L1 -3 6151 5189 2153 129 0 11 chr6 161501871 161502242 -27777312 + L1P LINE L1 3017 3383 -2763 1404 208 51 40 chr6 161503928 161504298 -27775256 - MLT1A2 LTR MaLR 0 374 1 687 265 172 40 chr6 161504298 161504774 -27774780 + MLT1H1 LTR MaLR 15 553 -2 815 242 0 0 chr6 161504938 161505095 -27774459 + MER8 DNA MER2_type 83 239 0 216 267 44 56 chr6 161505516 161505606 -27773948 + MIR SINE MIR 37 125 -83 3588 178 16 54 chr6 161505946 161506085 -27773469 + MER49 LTR ERV1 178 321 -602 2100 122 3 3 chr6 161506085 161506381 -27773173 + AluSg SINE Alu 1 296 -14 3588 178 16 54 chr6 161506381 161507017 -27772537 + MER49 LTR ERV1 321 923 0 414 315 59 5 chr6 161507050 161507253 -27772301 + L2 LINE L2 898 1111 -2203 2586 176 31 29 chr6 161507273 161507783 -27771771 + MLT2B2 LTR ERVL 5 515 0 1336 198 169 6 chr6 161507786 161508140 -27771414 - L1ME2 LINE L1 -256 5908 5497 399 257 36 21 chr6 161508430 161508570 -27770984 - MLT1H LTR MaLR -396 153 12 1363 266 124 11 chr6 161508718 161509170 -27770384 - MLT2E LTR ERVL 0 628 126 264 288 65 65 chr6 161509171 161509310 -27770244 + L2 LINE L2 2932 3070 -243 322 265 61 61 chr6 161509358 161509490 -27770064 - MER94 DNA DNA -2 132 1 395 225 150 43 chr6 161509491 161509678 -27769876 + L2 LINE L2 3102 3308 -5 262 228 18 0 chr6 161509693 161509750 -27769804 + MIR SINE MIR 77 134 -74 26 0 0 0 chr6 161510063 161510089 -27769465 + AT_rich Low_complexity Low_complexity 1 26 0 2383 279 56 42 chr6 161510120 161511216 -27768338 + L2 LINE L2 2220 3313 0 912 187 12 0 chr6 161511794 161511960 -27767594 - FRAM SINE Alu -9 167 1 205 375 0 0 chr6 161511969 161512025 -27767529 - MIR SINE MIR -66 142 87 324 205 305 30 chr6 161512097 161512399 -27767155 + L1ME4a LINE L1 5733 6117 -4 372 318 54 7 chr6 161512914 161513062 -27766492 - MIR SINE MIR -75 187 33 479 219 92 6 chr6 161513632 161513796 -27765758 + L1MEc LINE L1 768 945 -5451 405 319 36 18 chr6 161513815 161513981 -27765573 - HERV16 LTR ERVL -4706 290 122 2876 256 71 63 chr6 161514010 161514414 -27765140 - L1MEc LINE L1 -4930 1466 1067 257 0 30 0 chr6 161514414 161514447 -27765107 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1971 114 0 24 chr6 161514449 161514739 -27764815 - AluSq SINE Alu -30 283 1 2876 256 71 63 chr6 161514739 161515752 -27763802 - L1MEc LINE L1 -5329 1067 34 695 260 88 20 chr6 161515804 161516008 -27763546 - LTR16A LTR ERVL 0 450 233 432 305 55 12 chr6 161516515 161516679 -27762875 + MIR SINE MIR 5 175 -87 715 256 135 0 chr6 161516700 161516930 -27762624 + MIR SINE MIR 2 262 0 237 300 175 0 chr6 161517740 161517860 -27761694 + MIR SINE MIR 21 161 -101 219 318 148 0 chr6 161517901 161517989 -27761565 - MIR SINE MIR -108 154 54 186 268 0 0 chr6 161518024 161518065 -27761489 + MIR SINE MIR 222 262 0 254 336 15 61 chr6 161518475 161518606 -27760948 + MIR3 SINE MIR 55 179 -29 245 228 29 154 chr6 161519495 161519631 -27759923 - MIR SINE MIR -72 190 72 220 273 169 39 chr6 161519918 161520072 -27759482 + L3 LINE CR1 1159 1332 -245 35 78 0 0 chr6 161521519 161521596 -27757958 + AT_rich Low_complexity Low_complexity 1 77 0 948 270 56 81 chr6 161521725 161521935 -27757619 + L2 LINE L2 2881 3095 -218 195 42 0 0 chr6 161521935 161521959 -27757595 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 948 270 56 81 chr6 161521959 161522192 -27757362 + L2 LINE L2 3095 3313 0 360 0 0 0 chr6 161522258 161522298 -27757256 + (CA)n Simple_repeat Simple_repeat 1 40 0 183 360 56 0 chr6 161523489 161523578 -27755976 + MIR SINE MIR 54 147 -61 1329 232 57 44 chr6 161523848 161523988 -27755566 - MLT1A2 LTR MaLR 0 374 237 1593 167 130 3 chr6 161523988 161524287 -27755267 + MER1B DNA MER1_type 1 337 0 1329 232 57 44 chr6 161524287 161524512 -27755042 - MLT1A2 LTR MaLR -137 237 4 25 0 0 0 chr6 161526846 161526871 -27752683 + AT_rich Low_complexity Low_complexity 1 25 0 14213 247 40 47 chr6 161527160 161533115 -27746439 - L1P4 LINE L1 -414 6402 1 231 146 0 0 chr6 161534089 161534130 -27745424 + (GA)n Simple_repeat Simple_repeat 2 42 0 25 0 0 0 chr6 161534604 161534629 -27744925 + AT_rich Low_complexity Low_complexity 1 25 0 36 36 0 60 chr6 161535174 161535258 -27744296 + AT_rich Low_complexity Low_complexity 1 79 0 444 118 0 0 chr6 161535508 161535576 -27743978 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 660 269 24 38 chr6 161535581 161535871 -27743683 - L1ME1 LINE L1 -4 6231 5946 8814 189 88 78 chr6 161535893 161536004 -27743550 - L1MA4 LINE L1 -1 7718 7610 2432 157 12 35 chr6 161536004 161536235 -27743319 - MSTB LTR MaLR -4 422 204 2275 51 3 24 chr6 161536235 161536528 -27743026 - AluY SINE Alu -19 292 6 2432 157 12 35 chr6 161536528 161536728 -27742826 - MSTB LTR MaLR -222 204 1 8814 189 88 78 chr6 161536728 161539174 -27740380 - L1MA4 LINE L1 -109 7610 5189 1696 152 10 23 chr6 161539174 161539477 -27740077 - Tigger2 DNA MER2_type 0 2718 2420 8814 189 88 78 chr6 161539477 161542282 -27737272 - L1MA4 LINE L1 -2530 5189 2097 522 340 120 39 chr6 161542603 161543070 -27736484 - L1MA4 LINE L1 -5776 1720 1216 1690 225 56 2 chr6 161543092 161543501 -27736053 - L1ME1 LINE L1 -371 5864 5434 944 231 26 13 chr6 161543503 161543737 -27735817 - MLT1E2 LTR MaLR -1 625 389 4592 261 89 48 chr6 161543945 161546796 -27732758 - L1ME1 LINE L1 -884 5331 2599 1718 197 136 0 chr6 161546796 161547171 -27732383 + MSTB LTR MaLR 1 426 0 4592 261 89 48 chr6 161547171 161548457 -27731097 - L1ME1 LINE L1 -3616 2599 1368 284 65 306 16 chr6 161548457 161548519 -27731035 - MADE1 DNA Mariner 0 80 1 4592 261 89 48 chr6 161548519 161549370 -27730184 - L1ME1 LINE L1 -4847 1368 57 24 32 0 0 chr6 161549400 161549431 -27730123 + AT_rich Low_complexity Low_complexity 1 31 0 30 27 0 0 chr6 161549546 161549583 -27729971 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 161549739 161549760 -27729794 + AT_rich Low_complexity Low_complexity 1 21 0 371 375 12 61 chr6 161549959 161550204 -27729350 + L2 LINE L2 2914 3146 -126 2148 129 7 0 chr6 161551282 161551592 -27727962 + AluSq SINE Alu 1 312 -1 527 237 144 93 chr6 161551604 161551901 -27727653 + AluJo SINE Alu 2 312 0 319 243 140 15 chr6 161552527 161552663 -27726891 - MLT1J2 LTR MaLR -22 428 276 398 248 120 76 chr6 161552944 161553194 -27726360 - L2 LINE L2 -33 3280 3020 338 262 44 117 chr6 161553201 161553367 -27726187 + L2 LINE L2 1906 2050 -1264 1894 191 37 53 chr6 161553367 161553880 -27725674 - MLT1D LTR MaLR 0 505 1 338 262 44 117 chr6 161553880 161553961 -27725593 + L2 LINE L2 2050 2135 -1179 1066 326 159 4 chr6 161554266 161555089 -27724465 + L2 LINE L2 2175 3126 -187 2777 143 35 37 chr6 161555108 161555676 -27723878 + Tigger3(Golem) DNA MER2_type 1 3028 -1 216 205 51 103 chr6 161555677 161555794 -27723760 + L2 LINE L2 3148 3258 -55 366 318 23 0 chr6 161555952 161556128 -27723426 + L1ME LINE L1 5557 5736 -385 207 133 0 0 chr6 161557933 161557978 -27721576 + (TG)n Simple_repeat Simple_repeat 1 45 0 2281 164 2 0 chr6 161559120 161559528 -27720026 + L1P LINE L1 3544 3952 -2194 1301 71 25 50 chr6 161559528 161559658 -27719896 - MER75B DNA T2_type -261 243 118 3625 30 0 0 chr6 161559658 161560092 -27719462 + L1PA4 LINE L1 5719 6152 -3 1301 71 25 50 chr6 161560092 161560159 -27719395 - MER75B DNA T2_type -386 118 51 427 174 0 14 chr6 161560594 161560663 -27718891 - MER75B DNA T2_type -174 69 2 2116 160 11 0 chr6 161560664 161561027 -27718527 + L1P LINE L1 3950 4316 -1830 601 105 0 137 chr6 161561027 161561151 -27718403 + U6 snRNA snRNA 1 107 0 11750 178 27 39 chr6 161561151 161564261 -27715293 + L1PA14 LINE L1 3048 6159 -2 233 293 9 17 chr6 161564261 161564377 -27715177 + L1MEc LINE L1 815 929 -5467 2386 182 47 82 chr6 161564984 161565621 -27713933 + L1MD1 LINE L1 5628 6242 0 24 0 0 0 chr6 161565693 161565717 -27713837 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr6 161566029 161566064 -27713490 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 161567293 161567321 -27712233 + AT_rich Low_complexity Low_complexity 1 28 0 277 178 0 55 chr6 161567441 161567514 -27712040 - MER72 LTR ERV1 -645 77 9 1429 202 7 18 chr6 161567533 161567815 -27711739 - LTR38-int LTR ERV1 -1024 7096 6818 376 82 0 0 chr6 161567862 161567911 -27711643 - LTR38-int LTR ERV1 -4286 3834 3786 252 216 45 57 chr6 161568046 161568134 -27711420 - LTR38-int LTR ERV1 -2154 4177 4091 1809 180 0 0 chr6 161568134 161568489 -27711065 + AluSx SINE Alu 1 355 0 9609 161 48 58 chr6 161568514 161569548 -27710006 - LTR38-int LTR ERV1 -7 1779 737 840 176 0 0 chr6 161569548 161569679 -27709875 - FLAM_C SINE Alu -2 131 1 2010 155 126 8 chr6 161569681 161570062 -27709492 - MSTA LTR MaLR 0 428 3 9609 161 48 58 chr6 161570062 161570285 -27709269 - LTR38-int LTR ERV1 -1050 736 512 6010 163 56 35 chr6 161570285 161570804 -27708750 - LTR57-int LTR ERVL -3751 1592 1086 1589 203 6 19 chr6 161570804 161571119 -27708435 - AluJb SINE Alu -1 311 1 6010 163 56 35 chr6 161571119 161571847 -27707707 - LTR57-int LTR ERVL -4257 1086 318 9609 161 48 58 chr6 161571847 161572674 -27706880 - LTR38-int LTR ERV1 -1274 512 1 2706 185 21 25 chr6 161572675 161573232 -27706322 - LTR38 LTR ERV1 -1 555 1 22 0 0 0 chr6 161573935 161573957 -27705597 + AT_rich Low_complexity Low_complexity 1 22 0 3525 121 8 9 chr6 161574222 161574750 -27704804 + MER1A DNA MER1_type 1 527 0 2041 65 4 7 chr6 161574811 161575088 -27704466 + L1PA13 LINE L1 5888 6163 0 1047 16 79 0 chr6 161575261 161575387 -27704167 - MER85 DNA T2_type -2 137 2 23 54 0 0 chr6 161575645 161575682 -27703872 + AT_rich Low_complexity Low_complexity 1 37 0 1547 183 11 7 chr6 161575693 161575977 -27703577 - AluJb SINE Alu -27 285 1 1617 156 36 102 chr6 161575977 161576420 -27703134 - L1MA9 LINE L1 -34 6278 5865 314 313 109 35 chr6 161577303 161577533 -27702021 - MIR SINE MIR -14 248 2 1825 138 20 20 chr6 161578365 161578670 -27700884 + AluSq SINE Alu 3 307 -6 204 40 0 0 chr6 161578676 161578701 -27700853 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 259 283 46 68 chr6 161580332 161580569 -27698985 - L1MC/D LINE L1 -2008 5800 5569 * 2632 224 78 96 chr6 161580565 161580949 -27698605 - L1MDb LINE L1 -3958 2448 2059 2056 139 13 3 chr6 161580949 161581258 -27698296 - AluJo SINE Alu 0 312 1 2632 224 78 96 chr6 161581258 161582606 -27696948 - L1MDb LINE L1 -4347 2059 774 286 186 68 0 chr6 161582654 161582772 -27696782 + (TA)n Simple_repeat Simple_repeat 1 126 0 28 29 0 0 chr6 161582813 161582848 -27696706 + AT_rich Low_complexity Low_complexity 1 35 0 1179 199 36 112 chr6 161583877 161584298 -27695256 + MLT1B LTR MaLR 1 389 -1 389 145 0 0 chr6 161584299 161584361 -27695193 + MLT1B-int LTR MaLR 1 62 -1309 2720 178 42 8 chr6 161584361 161584919 -27694635 - MLT1A1-int LTR MaLR -729 642 16 405 138 15 0 chr6 161584935 161585000 -27694554 - MLT1A1 LTR MaLR 0 365 300 1672 197 89 6 chr6 161585898 161586259 -27693295 - MSTD LTR MaLR 0 396 6 510 276 118 6 chr6 161587094 161587264 -27692290 - MIR SINE MIR -3 259 71 2061 177 83 2 chr6 161587668 161588063 -27691491 - MSTA LTR MaLR 0 428 2 293 331 8 16 chr6 161588085 161588206 -27691348 + MLT1J2 LTR MaLR 92 211 -239 300 289 78 24 chr6 161588708 161588874 -27690680 - MLT1J2 LTR MaLR -12 438 264 502 264 61 12 chr6 161588934 161589097 -27690457 - MLT1J1 LTR MaLR -275 171 1 263 204 0 0 chr6 161590249 161590298 -27689256 + MLT1E LTR MaLR 545 593 0 248 208 20 69 chr6 161590299 161590400 -27689154 + L1MA10 LINE L1 6238 6333 -1 334 318 79 27 chr6 161590420 161590826 -27688728 + L1M4c LINE L1 1033 1459 -4925 * 501 281 20 76 chr6 161590825 161591220 -27688334 + L1ME3A LINE L1 5789 6161 -9 180 0 0 0 chr6 161591703 161591723 -27687831 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 598 183 8 50 chr6 161591725 161591845 -27687709 - FLAM_A SINE Alu -18 115 1 373 143 0 0 chr6 161591891 161591947 -27687607 - MLT1A1 LTR MaLR -300 65 10 2641 185 17 76 chr6 161592030 161592630 -27686924 - MLT2B3 LTR ERVL 0 532 1 523 246 30 50 chr6 161594825 161595024 -27684530 - Charlie4 DNA MER1_type -1669 292 98 22 0 0 0 chr6 161595297 161595319 -27684235 + AT_rich Low_complexity Low_complexity 1 22 0 503 68 135 0 chr6 161595341 161595415 -27684139 + MER85 DNA T2_type 1 84 -55 550 273 33 6 chr6 161595608 161595791 -27683763 - L1MC4a LINE L1 -1940 5868 5681 299 293 80 28 chr6 161595878 161596127 -27683427 - L1MC4a LINE L1 -2277 5531 5270 12776 193 56 41 chr6 161596206 161598888 -27680666 - L1MA8 LINE L1 -1 7250 4610 1414 172 55 52 chr6 161598888 161599179 -27680375 - AluJo SINE Alu -20 292 1 12776 193 56 41 chr6 161599179 161599209 -27680345 - L1MA8 LINE L1 -2641 4610 4582 2247 115 0 0 chr6 161599209 161599505 -27680049 - AluSc SINE Alu -2 307 12 12776 193 56 41 chr6 161599505 161602955 -27676599 - L1MA8 LINE L1 -2669 4582 6 21 82 0 0 chr6 161603076 161603125 -27676429 + AT_rich Low_complexity Low_complexity 1 49 0 324 295 53 11 chr6 161603125 161603315 -27676239 - L1M4 LINE L1 -1028 5118 4921 29 28 0 0 chr6 161603641 161603677 -27675877 + AT_rich Low_complexity Low_complexity 1 36 0 409 277 13 19 chr6 161603689 161603844 -27675710 - HAL1 LINE L1 -33 2474 2321 326 257 50 40 chr6 161603844 161603945 -27675609 + L2 LINE L2 3206 3307 -6 1779 251 136 56 chr6 161603950 161604708 -27674846 - HAL1 LINE L1 -191 2316 1620 1458 165 9 87 chr6 161604708 161605029 -27674525 + AluJo SINE Alu 1 296 -16 1779 251 136 56 chr6 161605029 161605134 -27674420 - HAL1 LINE L1 -887 1620 1525 2103 116 0 7 chr6 161605134 161605447 -27674107 - AluSx SINE Alu 0 311 1 218 32 32 0 chr6 161605452 161605483 -27674071 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1779 251 136 56 chr6 161605483 161605617 -27673937 - HAL1 LINE L1 -985 1522 1230 28 48 0 0 chr6 161605665 161605707 -27673847 + AT_rich Low_complexity Low_complexity 1 42 0 4230 183 38 26 chr6 161605710 161606840 -27672714 - L1MB2 LINE L1 -4 6167 5024 808 316 110 47 chr6 161606900 161607781 -27671773 - HAL1 LINE L1 -1429 1078 142 2211 87 42 0 chr6 161608748 161609034 -27670520 + AluSc SINE Alu 1 298 -11 2848 12 0 6 chr6 161609270 161609589 -27669965 + AluYb8 SINE Alu 1 317 -1 22 70 0 0 chr6 161610199 161610242 -27669312 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr6 161610665 161610690 -27668864 + AT_rich Low_complexity Low_complexity 1 25 0 1852 72 0 0 chr6 161611108 161611329 -27668225 + AluSg/x SINE Alu 82 302 -8 324 235 61 20 chr6 161612049 161612147 -27667407 - MIR SINE MIR -62 200 99 264 231 64 26 chr6 161612129 161612207 -27667347 + MIR SINE MIR 182 262 0 * 270 325 8 75 chr6 161613154 161613274 -27666280 + MIR SINE MIR 6 117 -145 1853 149 139 21 chr6 161613502 161613877 -27665677 - MSTA LTR MaLR -4 424 6 2271 102 0 0 chr6 161614521 161614816 -27664738 + AluSq SINE Alu 5 299 -14 1196 298 150 42 chr6 161615043 161615838 -27663716 + L2 LINE L2 668 1548 -1766 182 276 46 46 chr6 161615890 161615977 -27663577 + L2 LINE L2 3220 3306 -7 252 310 80 10 chr6 161616000 161616100 -27663454 + L2 LINE L2 3206 3312 -1 2122 122 0 3 chr6 161616415 161616709 -27662845 + AluSx SINE Alu 1 293 -19 340 244 118 17 chr6 161617460 161617579 -27661975 - MER103 DNA DNA -20 146 16 1997 147 67 0 chr6 161618257 161618570 -27660984 + MER1B DNA MER1_type 6 339 0 2090 120 0 10 chr6 161619185 161619484 -27660070 - AluSg SINE Alu -14 296 1 200 145 29 43 chr6 161619905 161619974 -27659580 + CT-rich Low_complexity Low_complexity 2 69 0 198 0 0 0 chr6 161620937 161620959 -27658595 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 560 348 60 24 chr6 161621776 161622109 -27657445 - LTR16C LTR ERVL -16 475 131 228 170 21 21 chr6 161622230 161622277 -27657277 - MER20 DNA MER1_type -3 216 170 675 164 15 55 chr6 161622277 161622400 -27657154 - L1 LINE L1 -2526 3620 3494 1387 188 16 49 chr6 161622400 161622704 -27656850 - AluJo SINE Alu -18 294 1 675 164 15 55 chr6 161622704 161622851 -27656703 - L1 LINE L1 -2652 3494 3308 511 207 90 0 chr6 161622851 161622962 -27656592 - MER20 DNA MER1_type -70 149 29 354 127 0 16 chr6 161622972 161623035 -27656519 + MER53 DNA DNA 4 65 -124 27 49 0 0 chr6 161623100 161623141 -27656413 + AT_rich Low_complexity Low_complexity 1 41 0 2656 179 62 65 chr6 161623175 161623707 -27655847 - MER67C LTR ERV1 -2 708 177 1612 101 0 0 chr6 161623707 161623914 -27655640 + AluSq SINE Alu 90 296 -17 2656 179 62 65 chr6 161623914 161624091 -27655463 - MER67C LTR ERV1 -533 177 1 468 313 102 67 chr6 161624353 161624954 -27654600 - ERVL LTR ERVL -403 5361 4740 394 359 51 8 chr6 161625149 161625383 -27654171 - ERVL LTR ERVL -1024 4461 4218 422 215 111 23 chr6 161625586 161625758 -27653796 + HsTC2 DNA Tc2 1711 1897 -1 321 246 14 0 chr6 161627161 161627230 -27652324 + L2 LINE L2 3244 3313 0 1700 156 0 21 chr6 161627616 161627898 -27651656 + AluJb SINE Alu 28 303 -9 1811 173 35 64 chr6 161628179 161628583 -27650971 - MSTD LTR MaLR 0 396 5 602 287 14 37 chr6 161628749 161628965 -27650589 - L2 LINE L2 -5 3308 3098 328 344 77 16 chr6 161629268 161629451 -27650103 + MIR3 SINE MIR 14 207 -1 431 308 139 21 chr6 161630127 161630500 -27649054 + L1MEc LINE L1 940 1356 -5040 431 286 85 35 chr6 161630994 161631193 -27648361 + MIR SINE MIR 15 223 -39 2392 63 3 31 chr6 161631400 161631719 -27647835 - AluY SINE Alu -1 310 1 331 166 18 225 chr6 161632257 161632426 -27647128 + MER94 DNA DNA 1 134 0 213 175 25 0 chr6 161635177 161635217 -27644337 + (TA)n Simple_repeat Simple_repeat 1 41 0 1307 142 46 0 chr6 161635735 161635954 -27643600 - MER30 DNA MER1_type 0 230 2 2104 118 0 0 chr6 161636604 161636900 -27642654 + AluSq SINE Alu 1 296 -17 312 310 35 17 chr6 161637032 161637148 -27642406 - L3 LINE CR1 -467 1110 993 403 389 82 4 chr6 161637317 161637587 -27641967 - L3 LINE CR1 -1089 488 198 27 49 0 0 chr6 161639110 161639151 -27640403 + AT_rich Low_complexity Low_complexity 1 41 0 218 284 173 0 chr6 161640080 161640161 -27639393 + L2 LINE L2 3208 3302 -11 243 146 0 0 chr6 161640714 161640755 -27638799 + (TA)n Simple_repeat Simple_repeat 1 41 0 1950 140 0 17 chr6 161640755 161641055 -27638499 - AluSx SINE Alu -17 295 1 27 81 0 0 chr6 161641056 161641118 -27638436 + AT_rich Low_complexity Low_complexity 1 62 0 273 309 32 24 chr6 161641143 161641269 -27638285 - L2 LINE L2 -613 2701 2575 1992 159 36 76 chr6 161641283 161641568 -27637986 - MLT1C LTR MaLR -14 453 193 1449 174 46 14 chr6 161641568 161641849 -27637705 - AluJo SINE Alu -20 292 3 1992 159 36 76 chr6 161641849 161642035 -27637519 - MLT1C LTR MaLR -274 193 1 281 291 141 41 chr6 161642425 161642605 -27636949 - L2 LINE L2 -1262 2052 1891 2030 119 164 11 chr6 161642605 161642793 -27636761 - MSTA LTR MaLR 0 428 270 180 0 0 0 chr6 161642793 161642813 -27636741 + (GA)n Simple_repeat Simple_repeat 1 20 0 2030 119 164 11 chr6 161642813 161642995 -27636559 - MSTA LTR MaLR -158 270 1 281 291 141 41 chr6 161642995 161643133 -27636421 - L2 LINE L2 -1423 1891 1702 1536 171 8 4 chr6 161643258 161643509 -27636045 + AluJo SINE Alu 12 263 -49 6012 91 10 4 chr6 161643942 161644777 -27634777 - L1PA10 LINE L1 -2 6166 5327 2706 145 2 2 chr6 161645011 161645439 -27634115 - MSTA LTR MaLR 0 428 1 22 70 0 0 chr6 161645939 161645982 -27633572 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr6 161646069 161646093 -27633461 + AT_rich Low_complexity Low_complexity 1 24 0 269 250 75 17 chr6 161646153 161646273 -27633281 - L1ME4a LINE L1 -6 6115 5989 295 267 152 14 chr6 161646545 161646762 -27632792 - L1M4 LINE L1 -2144 4002 3756 23 0 0 0 chr6 161646957 161646980 -27632574 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 161647264 161647286 -27632268 + AT_rich Low_complexity Low_complexity 1 22 0 493 296 108 71 chr6 161647426 161648119 -27631435 - L1M4 LINE L1 -2753 3393 2675 21 57 0 0 chr6 161648357 161648392 -27631162 + AT_rich Low_complexity Low_complexity 1 35 0 1996 165 11 31 chr6 161648571 161648952 -27630602 + THE1C LTR MaLR 3 375 0 1918 120 40 0 chr6 161650022 161650296 -27629258 - AluSx SINE Alu -18 294 10 339 333 52 7 chr6 161650459 161650612 -27628942 - L1M4 LINE L1 -2258 3888 3729 21 0 0 0 chr6 161650649 161650670 -27628884 + AT_rich Low_complexity Low_complexity 1 21 0 74 32 0 0 chr6 161650947 161651042 -27628512 + AT_rich Low_complexity Low_complexity 1 95 0 288 248 71 61 chr6 161651946 161652144 -27627410 - L1M4 LINE L1 -1468 4678 4479 355 305 21 28 chr6 161652888 161653029 -27626525 - L1ME4a LINE L1 -2111 5697 5558 257 212 88 65 chr6 161653114 161653284 -27626270 - L1ME4a LINE L1 -754 5429 5256 2780 251 62 17 chr6 161653396 161654962 -27624592 - L1ME2 LINE L1 0 6233 4461 1028 261 72 59 chr6 161655006 161655465 -27624089 - MLT1C LTR MaLR -2 465 1 873 326 69 48 chr6 161655486 161656575 -27622979 - L1ME2 LINE L1 -5212 1184 73 1364 98 5 5 chr6 161658073 161658267 -27621287 - AluSq SINE Alu -7 306 113 36 40 0 0 chr6 161658382 161658432 -27621122 + AT_rich Low_complexity Low_complexity 1 50 0 433 165 13 0 chr6 161658449 161658528 -27621026 - AluY SINE Alu -238 80 1 1037 288 80 87 chr6 161658550 161659576 -27619978 + L1ME LINE L1 2390 3421 -2725 1877 135 0 14 chr6 161659576 161659857 -27619697 + AluSx SINE Alu 7 283 -29 456 19 0 0 chr6 161659860 161659913 -27619641 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 1037 288 80 87 chr6 161659913 161660817 -27618737 + L1ME LINE L1 3423 4305 -1841 575 278 73 28 chr6 161660817 161660905 -27618649 - MIR SINE MIR -2 260 177 1552 152 30 23 chr6 161660905 161661169 -27618385 - AluSx SINE Alu -11 301 36 575 278 73 28 chr6 161661169 161661328 -27618226 - MIR SINE MIR -85 177 2 1037 288 80 87 chr6 161661328 161662077 -27617477 + L1ME LINE L1 4305 5057 -1089 424 283 27 22 chr6 161662098 161662282 -27617272 + L1ME LINE L1 5348 5532 -630 25 0 0 0 chr6 161662610 161662635 -27616919 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr6 161663198 161663219 -27616335 + AT_rich Low_complexity Low_complexity 1 21 0 289 323 65 43 chr6 161663385 161663571 -27615983 + L2 LINE L2 3124 3313 0 218 218 218 35 chr6 161663927 161664014 -27615540 + L2 LINE L2 3170 3272 0 384 303 25 0 chr6 161664053 161664172 -27615382 + MER117 DNA MER1_type 50 171 -26 211 28 56 0 chr6 161665834 161665870 -27613684 + (TA)n Simple_repeat Simple_repeat 2 39 0 291 202 40 16 chr6 161666020 161666144 -27613410 + (TA)n Simple_repeat Simple_repeat 2 128 0 544 307 61 22 chr6 161666950 161667181 -27612373 - MIR SINE MIR -17 245 6 810 226 17 28 chr6 161667284 161667465 -27612089 - MIR SINE MIR -50 212 34 1388 169 0 4 chr6 161668281 161668506 -27611048 - AluSx SINE Alu -88 224 1 23 0 0 0 chr6 161668513 161668536 -27611018 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr6 161669226 161669271 -27610283 + AT_rich Low_complexity Low_complexity 1 45 0 300 329 143 6 chr6 161670223 161670384 -27609170 - MIR SINE MIR -43 219 37 44 0 0 0 chr6 161670770 161670814 -27608740 + AT_rich Low_complexity Low_complexity 1 44 0 1049 202 0 0 chr6 161670917 161671105 -27608449 + MER5A DNA MER1_type 1 188 -1 439 328 22 17 chr6 161671220 161671400 -27608154 + MER5A DNA MER1_type 1 181 -8 1447 233 52 37 chr6 161672265 161672647 -27606907 + L1M4 LINE L1 4 391 -6151 3153 241 52 41 chr6 161672698 161674478 -27605076 + L1M4 LINE L1 1422 3353 -3291 2422 52 0 52 chr6 161674478 161674803 -27604751 + AluY SINE Alu 1 308 -3 3153 241 52 41 chr6 161674803 161675108 -27604446 + L1M4 LINE L1 3353 3653 -2991 296 219 14 0 chr6 161675109 161675182 -27604372 + L1M4 LINE L1 4609 4682 -1962 295 260 30 30 chr6 161675183 161675283 -27604271 + L1MB7 LINE L1 6060 6159 -25 248 388 125 13 chr6 161675809 161676033 -27603521 - L2 LINE L2 -10 3262 3014 256 383 72 16 chr6 161676385 161676706 -27602848 - L2 LINE L2 -566 2748 2410 1534 212 65 65 chr6 161677446 161677989 -27601565 - L1ME2 LINE L1 -10 6154 5612 257 139 65 0 chr6 161679544 161679652 -27599902 + (TA)n Simple_repeat Simple_repeat 2 116 0 461 312 25 6 chr6 161679980 161680137 -27599417 - MIR SINE MIR -50 212 53 24 32 0 0 chr6 161680235 161680266 -27599288 + AT_rich Low_complexity Low_complexity 1 31 0 679 150 60 118 chr6 161680336 161680607 -27598947 - MER31B LTR ERV1 -77 389 32 660 246 59 0 chr6 161680622 161680825 -27598729 - L1ME3 LINE L1 -22 6140 5926 262 241 0 25 chr6 161680959 161681038 -27598516 - L1M4 LINE L1 -2875 3271 3195 213 305 109 39 chr6 161683168 161683296 -27596258 - MIR SINE MIR -108 154 18 5066 179 38 30 chr6 161683431 161684770 -27594784 - L1MA7 LINE L1 0 6291 4965 1501 191 4 0 chr6 161684770 161685016 -27594538 - AluJb SINE Alu -55 257 11 5066 179 38 30 chr6 161685016 161685150 -27594404 - L1MA7 LINE L1 -1326 4965 4834 1589 189 3 33 chr6 161685150 161685451 -27594103 - AluJb SINE Alu -20 292 1 5066 179 38 30 chr6 161685451 161685789 -27593765 - L1MA7 LINE L1 -1457 4834 4465 694 107 0 13 chr6 161686219 161686332 -27593222 - LTR12 LTR ERV1 0 714 181 323 147 69 98 chr6 161686332 161686434 -27593120 - LTR30 LTR ERV1 -92 620 379 1131 130 65 137 chr6 161686435 161686742 -27592812 - LTR12 LTR ERV1 -429 285 1 7335 106 2 11 chr6 161686742 161687793 -27591761 - HERV9 LTR ERV1 0 8399 7359 32 67 0 0 chr6 161687828 161687888 -27591666 + AT_rich Low_complexity Low_complexity 1 60 0 305 293 90 8 chr6 161688245 161688378 -27591176 + L1M4 LINE L1 702 845 -5697 23 0 0 0 chr6 161688435 161688458 -27591096 + AT_rich Low_complexity Low_complexity 1 23 0 234 267 84 23 chr6 161688472 161688603 -27590951 + L1M4 LINE L1 903 1041 -5505 2085 144 57 1 chr6 161688613 161689282 -27590272 + L1P4 LINE L1 5069 5799 -352 * 5145 148 18 28 chr6 161689279 161690896 -27588658 + L1PB1 LINE L1 4189 5791 -360 195 184 0 0 chr6 161690896 161690934 -27588620 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2249 128 11 8 chr6 161690936 161691332 -27588222 + L1PB1 LINE L1 5782 6178 0 223 258 0 52 chr6 161691349 161691446 -27588108 + GA-rich Low_complexity Low_complexity 1 92 0 327 226 19 88 chr6 161691454 161691613 -27587941 + L1M4 LINE L1 2058 2205 -4620 2203 237 56 26 chr6 161691763 161692721 -27586833 + L1M4 LINE L1 4446 5247 -1397 1509 117 9 0 chr6 161692721 161692934 -27586620 + AluSc SINE Alu 86 300 -9 368 158 0 12 chr6 161692934 161693016 -27586538 + GA-rich Low_complexity Low_complexity 1 81 0 667 145 1 79 chr6 161693208 161693337 -27586217 + L1MC1 LINE L1 6191 6300 -44 2218 92 0 0 chr6 161693337 161693644 -27585910 - AluSg SINE Alu 0 307 1 667 145 1 79 chr6 161693644 161693682 -27585872 + L1MC1 LINE L1 6300 6339 -5 296 150 50 0 chr6 161693764 161693824 -27585730 + L1MB7 LINE L1 5575 5637 -529 * 857 251 38 11 chr6 161693819 161694082 -27585472 + L1MB7 LINE L1 5915 6184 0 23 54 0 0 chr6 161694554 161694591 -27584963 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr6 161695599 161695633 -27583921 + AT_rich Low_complexity Low_complexity 1 34 0 264 298 53 30 chr6 161695764 161695895 -27583659 + HAL1 LINE L1 104 237 -2270 473 321 51 54 chr6 161697445 161697741 -27581813 + HAL1 LINE L1 258 552 -1955 911 275 84 48 chr6 161697909 161698280 -27581274 + L2 LINE L2 2292 2675 -639 278 167 30 30 chr6 161698299 161698365 -27581189 - MLT1I LTR MaLR 0 409 344 418 282 159 31 chr6 161698368 161698563 -27580991 - MER58A DNA MER1_type -1 223 4 673 278 85 35 chr6 161698563 161698822 -27580732 - MLT1I LTR MaLR -58 351 80 623 180 57 0 chr6 161698817 161698939 -27580615 + MLT1C LTR MaLR 337 465 -2 * 250 288 55 0 chr6 161698942 161699015 -27580539 - MLT1I LTR MaLR -332 77 1 524 297 112 61 chr6 161699022 161699544 -27580010 + L2 LINE L2 2699 3270 -43 382 294 221 10 chr6 161700263 161700467 -27579087 - L2 LINE L2 -1185 2129 1883 2202 107 0 0 chr6 161701529 161701828 -27577726 - AluSx SINE Alu -5 307 9 585 183 0 0 chr6 161702237 161702341 -27577213 - AluJb SINE Alu -20 292 189 1941 90 8 150 chr6 161702371 161702772 -27576782 - LTR14B LTR ERVK 0 608 1 1826 112 8 8 chr6 161702775 161703042 -27576512 - AluSq SINE Alu -46 267 1 825 150 0 36 chr6 161703042 161703182 -27576372 - AluJb SINE Alu -177 135 1 4382 170 24 9 chr6 161703209 161704419 -27575135 + L1MA9 LINE L1 4847 6081 -231 321 225 56 0 chr6 161704444 161704533 -27575021 + L1MA9 LINE L1 6194 6287 -25 24 67 0 0 chr6 161704533 161704578 -27574976 + AT_rich Low_complexity Low_complexity 1 45 0 323 222 14 1 chr6 161704848 161704943 -27574611 - L1MC/D LINE L1 -332 5830 5748 226 234 0 0 chr6 161704946 161704993 -27574561 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2251 101 0 13 chr6 161705203 161705510 -27574044 - AluSg SINE Alu -7 303 1 2641 167 47 112 chr6 161705819 161706563 -27572991 - LTR34 LTR ERV1 -1 698 3 308 301 54 36 chr6 161707041 161707207 -27572347 + L2 LINE L2 3145 3313 0 491 277 204 17 chr6 161707872 161708107 -27571447 - L2 LINE L2 -1185 2129 1851 719 145 8 0 chr6 161709163 161709280 -27570274 - AluSg/x SINE Alu -6 304 187 1977 87 8 152 chr6 161709315 161709717 -27569837 - LTR14B LTR ERVK 0 608 1 1776 132 8 4 chr6 161709720 161709986 -27569568 - AluSq SINE Alu -46 267 1 678 203 0 31 chr6 161709988 161710116 -27569438 - AluJb SINE Alu -188 124 1 4416 173 27 7 chr6 161710117 161711348 -27568206 + L1MA9 LINE L1 4824 6081 -231 312 208 0 0 chr6 161711390 161711467 -27568087 + L1MA8 LINE L1 6203 6279 -12 253 229 0 0 chr6 161711794 161711855 -27567699 - L1ME LINE L1 -335 5827 5767 263 226 0 16 chr6 161711869 161711931 -27567623 + (TA)n Simple_repeat Simple_repeat 2 62 0 2259 99 0 22 chr6 161712116 161712428 -27567126 - AluSg SINE Alu -5 305 1 2656 159 48 117 chr6 161712732 161713474 -27566080 - LTR34 LTR ERV1 -6 693 3 2822 162 83 27 chr6 161713901 161714500 -27565054 - LTR27 LTR ERV1 -1 635 3 1859 78 50 4 chr6 161715151 161715393 -27564161 + AluSp SINE Alu 11 263 -50 728 271 119 67 chr6 161715540 161715921 -27563633 + L1ME3A LINE L1 5681 6092 -78 2140 115 20 7 chr6 161715921 161716217 -27563337 - AluSx SINE Alu -12 300 1 728 271 119 67 chr6 161716217 161716296 -27563258 + L1ME3A LINE L1 6092 6165 -5 22 56 0 0 chr6 161716489 161716525 -27563029 + AT_rich Low_complexity Low_complexity 1 36 0 532 100 21 179 chr6 161716538 161716678 -27562876 - LTR29 LTR ERV1 -526 118 1 453 265 84 12 chr6 161716691 161716857 -27562697 - MER20B DNA MER1_type -454 329 152 * 477 227 66 29 chr6 161716851 161717047 -27562507 + LTR26 LTR ERV1 340 517 -86 285 302 103 24 chr6 161717059 161717185 -27562369 - MER20B DNA MER1_type -78 141 6 1042 199 93 163 chr6 161717979 161718753 -27560801 - LTR8A LTR ERV1 -7 720 1 2261 86 3 10 chr6 161720338 161720639 -27558915 - AluY SINE Alu -12 299 1 4130 173 15 29 chr6 161721672 161722466 -27557088 + LTR39 LTR ERV1 1 783 0 231 283 0 0 chr6 161722802 161722855 -27556699 + Charlie4 DNA MER1_type 1 53 -1908 1650 181 11 11 chr6 161722926 161723208 -27556346 - AluJb SINE Alu -30 282 1 4536 154 73 18 chr6 161723397 161724255 -27555299 + MER4D LTR ERV1 1 664 0 2472 158 58 5 chr6 161724503 161724932 -27554622 - LTR47A LTR ERVL 0 452 1 5116 128 31 27 chr6 161725629 161726526 -27553028 - MER4D LTR ERV1 -2 901 1 4812 212 82 78 chr6 161726589 161727782 -27551772 + L1MD2 LINE L1 53 1240 -5166 2749 32 0 0 chr6 161727782 161728093 -27551461 + AluY SINE Alu 1 311 0 4812 212 82 78 chr6 161728093 161729785 -27549769 + L1MD2 LINE L1 1240 2913 -3493 1107 192 12 33 chr6 161729785 161730025 -27549529 - MER46A DNA MER2_type 0 236 2 4812 212 82 78 chr6 161730025 161730303 -27549251 + L1MD2 LINE L1 2913 3188 -3218 5363 217 49 43 chr6 161730314 161733007 -27546547 + L1MD2 LINE L1 3349 6048 -571 483 18 0 0 chr6 161733007 161733063 -27546491 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 5363 217 49 43 chr6 161733063 161733515 -27546039 + L1MD2 LINE L1 6048 6496 -123 339 357 75 9 chr6 161735156 161735369 -27544185 - MIR SINE MIR -32 230 4 27 29 0 0 chr6 161736349 161736383 -27543171 + AT_rich Low_complexity Low_complexity 1 34 0 236 299 45 75 chr6 161736518 161736627 -27542927 - L1ME LINE L1 -316 5805 5694 2219 99 23 3 chr6 161736627 161736929 -27542625 - AluSq SINE Alu -5 308 1 236 299 45 75 chr6 161736929 161737153 -27542401 - L1ME LINE L1 -427 5694 5482 307 236 11 22 chr6 161737252 161737341 -27542213 - L1ME LINE L1 -2466 5342 5255 2192 104 28 17 chr6 161737738 161738092 -27541462 - THE1C LTR MaLR 0 375 18 10486 121 27 3 chr6 161738093 161739635 -27539919 - THE1C-int LTR MaLR -2 1578 1 2513 102 19 16 chr6 161739635 161740009 -27539545 - THE1C LTR MaLR 0 375 1 249 108 0 0 chr6 161740277 161740314 -27539240 + (CAGA)n Simple_repeat Simple_repeat 3 39 0 388 244 94 0 chr6 161740363 161740490 -27539064 + L1ME3A LINE L1 5854 5992 -178 496 311 46 47 chr6 161741220 161741586 -27537968 - L1MEc LINE L1 -887 1603 1183 379 298 77 49 chr6 161741601 161741886 -27537668 - L1MEc LINE L1 -4984 1135 843 503 298 80 0 chr6 161741933 161742121 -27537433 + MIR SINE MIR 58 260 -2 2137 116 3 0 chr6 161742121 161742405 -27537149 - AluSx SINE Alu -27 285 1 933 315 40 2 chr6 161744051 161744448 -27535106 - LTR16C LTR ERVL 0 491 80 1322 241 65 25 chr6 161744619 161745070 -27534484 - MLT1F LTR MaLR -77 465 5 753 206 25 34 chr6 161745543 161745747 -27533807 - MLT1A1 LTR MaLR -2 363 162 571 122 0 0 chr6 161745818 161745908 -27533646 - L1MA9 LINE L1 0 6312 6223 2497 110 28 24 chr6 161745913 161746187 -27533367 - MSTA LTR MaLR 0 428 150 2053 141 25 35 chr6 161746187 161746555 -27532999 + THE1B LTR MaLR 1 364 0 2497 110 28 24 chr6 161746555 161746706 -27532848 - MSTA LTR MaLR -278 150 1 1968 164 58 14 chr6 161746708 161747135 -27532419 - L1MA9 LINE L1 -92 6220 5775 738 197 9 21 chr6 161747181 161747347 -27532207 - MLT1A1 LTR MaLR -214 151 1 2060 158 34 31 chr6 161748334 161748885 -27530669 + MLT2A2 LTR ERVL 1 554 0 191 219 37 61 chr6 161749602 161749684 -27529870 - L2 LINE L2 0 3272 3193 520 246 16 80 chr6 161749686 161749873 -27529681 - MER5B DNA MER1_type 0 178 4 2354 81 0 0 chr6 161750265 161750624 -27528930 + L1PA6 LINE L1 5809 6167 0 212 233 0 0 chr6 161751689 161751732 -27527822 + GA-rich Low_complexity Low_complexity 4 46 0 22 35 0 0 chr6 161752301 161752330 -27527224 + AT_rich Low_complexity Low_complexity 1 29 0 458 337 149 30 chr6 161752352 161752687 -27526867 - L1MC/D LINE L1 -2019 5789 5415 1765 169 20 20 chr6 161752902 161753250 -27526304 + MLT1A1 LTR MaLR 12 359 -6 200 203 0 47 chr6 161755166 161755230 -27524324 + (TA)n Simple_repeat Simple_repeat 2 62 0 240 35 0 0 chr6 161755847 161755876 -27523678 + (T)n Simple_repeat Simple_repeat 1 29 0 485 335 69 25 chr6 161756384 161756703 -27522851 - L3 LINE CR1 -3 1574 1242 495 227 25 66 chr6 161756930 161757044 -27522510 - L1MC5 LINE L1 -26 7935 7831 2300 50 0 30 chr6 161757044 161757345 -27522209 - AluY SINE Alu -19 292 1 495 227 25 66 chr6 161757345 161757428 -27522126 - L1MC5 LINE L1 -130 7831 7746 293 61 0 20 chr6 161760730 161760779 -27518775 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2227 124 0 9 chr6 161761283 161761631 -27517923 - L1PA13 LINE L1 -1 6162 5818 293 340 135 7 chr6 161762030 161762171 -27517383 + MIR3 SINE MIR 27 185 -23 271 286 65 65 chr6 161762452 161762620 -27516934 + MIR SINE MIR 13 180 -82 182 156 22 0 chr6 161762810 161762855 -27516699 + (TA)n Simple_repeat Simple_repeat 2 47 0 478 301 121 0 chr6 161763648 161763821 -27515733 - MIR SINE MIR -3 259 66 1777 179 24 0 chr6 161763990 161764281 -27515273 - AluJb SINE Alu -10 302 5 214 140 20 20 chr6 161764306 161764356 -27515198 + CT-rich Low_complexity Low_complexity 5 54 0 2095 98 36 0 chr6 161764945 161765220 -27514334 - AluSx SINE Alu -23 289 5 24 77 0 0 chr6 161766859 161766911 -27512643 + AT_rich Low_complexity Low_complexity 1 52 0 260 304 59 0 chr6 161766912 161767047 -27512507 - L1ME4a LINE L1 -12 6109 5967 391 246 118 55 chr6 161767223 161767428 -27512126 - L1ME4a LINE L1 -373 5748 5511 1962 121 103 0 chr6 161767428 161767710 -27511844 + AluSx SINE Alu 1 311 -1 391 246 118 55 chr6 161767710 161767850 -27511704 - L1ME4a LINE L1 -610 5511 5381 354 300 100 29 chr6 161767978 161768218 -27511336 - L1ME4a LINE L1 -919 5227 4971 725 275 118 45 chr6 161768463 161768979 -27510575 - L1ME4a LINE L1 -1236 4910 4357 21 0 0 0 chr6 161769189 161769210 -27510344 + AT_rich Low_complexity Low_complexity 1 21 0 252 122 0 0 chr6 161770632 161770673 -27508881 + (CA)n Simple_repeat Simple_repeat 1 41 0 34 42 0 0 chr6 161770787 161770835 -27508719 + AT_rich Low_complexity Low_complexity 1 48 0 664 298 52 19 chr6 161770871 161771234 -27508320 + L1MC/D LINE L1 5353 5727 -2081 3873 114 92 5 chr6 161773480 161774087 -27505467 + PABL_A LTR ERV1 1 660 0 235 297 115 19 chr6 161776926 161777135 -27502419 - L1MC4 LINE L1 -33 8009 7781 457 199 126 26 chr6 161777135 161777326 -27502228 - L1MC4 LINE L1 -645 7397 7188 219 303 67 0 chr6 161777334 161777423 -27502131 - MIR SINE MIR -124 138 44 1830 150 18 12 chr6 161777462 161777789 -27501765 + MER61A LTR ERV1 1 329 -14 191 232 107 18 chr6 161778441 161778497 -27501057 - MIR SINE MIR -87 121 61 340 78 0 20 chr6 161779338 161779389 -27500165 - MER61A LTR ERV1 0 343 294 299 333 27 36 chr6 161780349 161780460 -27499094 - MIR SINE MIR -112 150 41 4381 106 11 9 chr6 161780597 161781231 -27498323 - MER41B LTR ERV1 0 635 1 255 268 93 31 chr6 161783860 161783957 -27495597 + MIR3 SINE MIR 85 187 -21 794 205 25 12 chr6 161784241 161784402 -27495152 - MER5A DNA MER1_type 0 189 27 495 232 10 0 chr6 161785449 161785548 -27494006 + MER5A DNA MER1_type 19 118 -71 284 344 143 8 chr6 161785677 161785936 -27493618 - L2 LINE L2 -339 2975 2682 185 273 30 0 chr6 161786532 161786598 -27492956 - L2 LINE L2 -232 3040 2973 257 245 189 0 chr6 161786680 161786786 -27492768 + MIR SINE MIR 46 171 -91 417 344 162 44 chr6 161787971 161788852 -27490702 - L2 LINE L2 -2117 1197 213 2229 114 3 13 chr6 161789024 161789332 -27490222 + AluSp SINE Alu 1 305 -8 269 268 92 35 chr6 161791376 161791518 -27488036 - L1MC5 LINE L1 -30 7931 7782 430 341 52 65 chr6 161791518 161792070 -27487484 + L3 LINE CR1 744 1288 -289 277 264 57 38 chr6 161792766 161792872 -27486682 + MIR SINE MIR 40 147 -115 2414 89 0 0 chr6 161793359 161793663 -27485891 + AluSq SINE Alu 1 304 -9 2220 90 9 43 chr6 161793891 161794214 -27485340 - AluSx SINE Alu 0 312 1 926 307 61 25 chr6 161794901 161795287 -27484267 + L2 LINE L2 2892 3295 -18 431 113 127 0 chr6 161795287 161795358 -27484196 - MADE1 DNA Mariner 0 80 1 926 307 61 25 chr6 161795358 161795378 -27484176 + L2 LINE L2 3295 3313 0 318 313 0 10 chr6 161796314 161796410 -27483144 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 261 336 76 0 chr6 161797525 161797644 -27481910 - MIR SINE MIR -62 146 19 342 0 0 0 chr6 161798128 161798166 -27481388 + (TG)n Simple_repeat Simple_repeat 2 39 0 493 323 65 13 chr6 161799817 161800049 -27479505 + MIR SINE MIR 2 245 -17 306 0 0 0 chr6 161800073 161800107 -27479447 + (TA)n Simple_repeat Simple_repeat 1 34 0 2252 113 0 3 chr6 161800900 161801193 -27478361 - AluSg SINE Alu -18 292 1 324 336 49 7 chr6 161803119 161803262 -27476292 + MIR3 SINE MIR 19 167 -41 411 313 45 15 chr6 161804989 161805123 -27474431 - MIR3 SINE MIR -50 158 21 183 328 31 0 chr6 161805406 161805470 -27474084 - MIR SINE MIR -71 191 126 464 271 106 68 chr6 161806903 161807110 -27472444 + MIR SINE MIR 10 224 -38 193 385 12 0 chr6 161807205 161807288 -27472266 - L2 LINE L2 -5 3267 3184 215 217 67 33 chr6 161809595 161809655 -27469899 - MIR SINE MIR -109 153 92 255 324 90 21 chr6 161810544 161810689 -27468865 - MIR SINE MIR -20 242 88 1336 111 11 0 chr6 161811139 161811328 -27468226 - AluSg/x SINE Alu -1 311 121 289 340 79 23 chr6 161812164 161812293 -27467261 + MIR SINE MIR 22 155 -68 24 32 0 0 chr6 161813952 161813983 -27465571 + AT_rich Low_complexity Low_complexity 1 31 0 4580 136 14 5 chr6 161814276 161815012 -27464542 + L1PB3 LINE L1 5405 6146 -8 196 30 61 0 chr6 161815242 161815275 -27464279 + (TA)n Simple_repeat Simple_repeat 2 36 0 627 291 183 49 chr6 161815792 161816594 -27462960 - L2 LINE L2 -525 2789 1880 1342 292 67 31 chr6 161816848 161817648 -27461906 + L1ME LINE L1 57 891 -5505 2350 112 0 0 chr6 161817648 161817952 -27461602 + AluSx SINE Alu 1 304 -8 1342 292 67 31 chr6 161817952 161818213 -27461341 + L1ME LINE L1 891 1141 -5255 487 239 94 47 chr6 161818261 161818495 -27461059 + L1M4 LINE L1 3385 3629 -2517 195 344 0 21 chr6 161818804 161818897 -27460657 - L2 LINE L2 -513 2801 2711 313 130 0 0 chr6 161819234 161819280 -27460274 + MER57B LTR ERV1 1 46 -388 3169 136 6 2 chr6 161819311 161819813 -27459741 + MER57B-int LTR ERV1 6646 7149 -388 649 136 68 0 chr6 161819813 161819931 -27459623 + LTR54B LTR ERV1 3 128 -370 1482 91 116 16 chr6 161819931 161820173 -27459381 + MER57B-int LTR ERV1 7272 7537 0 2394 177 24 0 chr6 161820173 161820597 -27458957 + MER57B LTR ERV1 1 434 0 31 58 0 0 chr6 161821531 161821583 -27457971 + AT_rich Low_complexity Low_complexity 1 52 0 201 303 194 52 chr6 161821758 161821913 -27457641 - MIR SINE MIR -66 196 20 268 317 10 10 chr6 161822100 161822204 -27457350 - MIR SINE MIR -15 247 144 288 278 56 33 chr6 161822306 161822369 -27457185 - MIR SINE MIR -140 122 55 604 75 0 0 chr6 161822369 161822449 -27457105 + MADE1 DNA Mariner 1 80 0 288 278 56 33 chr6 161822449 161822475 -27457079 - MIR SINE MIR -207 55 31 408 276 224 10 chr6 161823391 161823583 -27455971 - MIR SINE MIR -10 252 20 306 309 40 16 chr6 161824924 161825050 -27454504 - MIR3 SINE MIR -23 185 57 304 341 127 14 chr6 161825055 161825275 -27454279 - MIR SINE MIR -3 259 15 1044 309 203 5 chr6 161826369 161826932 -27452622 - L3 LINE CR1 -278 1299 626 2310 125 0 0 chr6 161827485 161827798 -27451756 + AluSq SINE Alu 1 313 0 243 0 0 0 chr6 161828579 161828606 -27450948 + (CA)n Simple_repeat Simple_repeat 2 28 0 2387 210 67 27 chr6 161828610 161829238 -27450316 + MER82 DNA MER2_type 1 653 0 1903 204 63 31 chr6 161830401 161830890 -27448664 - MLT1D LTR MaLR 0 505 1 282 279 139 24 chr6 161831437 161831602 -27447952 - L1MC/D LINE L1 -2084 5724 5541 22 0 0 0 chr6 161832256 161832278 -27447276 + AT_rich Low_complexity Low_complexity 1 22 0 17624 99 19 4 chr6 161832654 161836042 -27443512 - L1PA7 LINE L1 -3 6466 3028 11029 105 30 4 chr6 161836043 161837708 -27441846 - L1PA7 LINE L1 -4746 1715 8 3567 165 91 84 chr6 161838213 161839285 -27440269 - Tigger6a DNA MER2_type 0 1083 5 852 288 55 0 chr6 161839472 161839708 -27439846 - MIR SINE MIR -12 250 2 608 312 88 46 chr6 161841116 161841571 -27437983 + L2 LINE L2 2840 3313 0 195 368 0 15 chr6 161841576 161841644 -27437910 + L2 LINE L2 3227 3293 -20 2296 147 47 42 chr6 161841698 161842128 -27437426 + MSTB1 LTR MaLR 1 432 0 1215 206 48 20 chr6 161842159 161842614 -27436940 - MLT1D LTR MaLR 0 505 2 24 32 0 0 chr6 161893794 161893825 -27385729 + AT_rich Low_complexity Low_complexity 1 31 0 354 236 29 100 chr6 161893957 161894097 -27385457 + L2 LINE L2 3184 3313 0 3220 180 21 14 chr6 161894216 161894872 -27384682 + L1PB4 LINE L1 5494 6154 -2 180 306 32 16 chr6 161896084 161896146 -27383408 - MIR3 SINE MIR -35 173 111 21 82 0 0 chr6 161896315 161896364 -27383190 + AT_rich Low_complexity Low_complexity 1 49 0 2032 142 69 89 chr6 161897489 161897926 -27381628 + MSTA LTR MaLR 1 428 0 9030 170 38 4 chr6 161897926 161898361 -27381193 + MSTA-int LTR MaLR 1 420 -1231 233 29 29 0 chr6 161898361 161898395 -27381159 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 9030 170 38 4 chr6 161898395 161899551 -27380003 + MSTA-int LTR MaLR 420 1646 -5 2079 163 85 12 chr6 161899556 161899955 -27379599 + MSTA LTR MaLR 1 428 0 1065 190 0 26 chr6 161900067 161900262 -27379292 - AluJb SINE Alu -116 196 7 1801 315 54 5 chr6 161900394 161901009 -27378545 + L2 LINE L2 2171 2815 -499 2023 70 0 7 chr6 161902244 161902514 -27377040 - AluY SINE Alu 0 311 44 237 273 31 106 chr6 161904294 161904455 -27375099 + MIR SINE MIR 1 149 -59 22 88 0 0 chr6 161904468 161904525 -27375029 + AT_rich Low_complexity Low_complexity 1 57 0 296 340 99 26 chr6 161904625 161904857 -27374697 - MIR SINE MIR 0 262 14 289 123 231 0 chr6 161906384 161906449 -27373105 - MADE1 DNA Mariner 0 80 1 407 226 93 60 chr6 161906623 161906871 -27372683 + LTR33 LTR ERVL 13 268 -253 720 228 39 5 chr6 161907405 161907611 -27371943 - MER96B DNA MER1_type? -195 222 10 428 313 14 35 chr6 161907685 161907829 -27371725 + MIR SINE MIR 13 153 -109 765 230 155 17 chr6 161907918 161908157 -27371397 + MER46C DNA MER2_type 65 336 -2 308 213 16 0 chr6 161909389 161909450 -27370104 + MIR3 SINE MIR 98 159 -49 688 328 30 0 chr6 161909723 161909955 -27369599 - MIR SINE MIR -14 248 10 215 186 0 34 chr6 161910073 161910132 -27369422 + CT-rich Low_complexity Low_complexity 4 60 0 191 298 53 0 chr6 161910658 161910715 -27368839 + MIR SINE MIR 70 129 -133 230 302 102 12 chr6 161910994 161911116 -27368438 - MIR SINE MIR -67 141 21 22 0 0 0 chr6 161911683 161911705 -27367849 + AT_rich Low_complexity Low_complexity 1 22 0 246 353 29 24 chr6 161911857 161912027 -27367527 + L2 LINE L2 1850 2020 -1294 320 239 177 9 chr6 161912804 161912917 -27366637 + MIR SINE MIR 118 249 -13 342 276 155 0 chr6 161914374 161914490 -27365064 + MIR SINE MIR 6 139 -123 184 302 38 0 chr6 161915684 161915737 -27363817 + MER5A DNA MER1_type 89 143 -46 369 305 111 48 chr6 161916747 161917098 -27362456 + L1MC4a LINE L1 4932 5304 -842 547 314 62 31 chr6 161917108 161917659 -27361895 + L1MC4a LINE L1 5314 5881 -1927 279 288 123 55 chr6 161918091 161918310 -27361244 + MLT1H LTR MaLR 189 422 -127 1089 211 10 5 chr6 161918685 161918889 -27360665 - MER58A DNA MER1_type -19 205 1 3492 97 10 0 chr6 161919331 161919814 -27359740 - L1PA11 LINE L1 -8 6166 5679 6651 136 22 7 chr6 161919815 161919860 -27359694 + L1P4 LINE L1 4220 4263 -1905 2196 133 0 0 chr6 161919860 161920168 -27359386 - AluSg SINE Alu -2 308 1 6651 136 22 7 chr6 161920168 161921380 -27358174 + L1P4 LINE L1 4263 5489 -679 5313 39 8 0 chr6 161921371 161922159 -27357395 + L1PA6 LINE L1 5115 5907 -247 * 21 36 0 0 chr6 161922159 161922187 -27357367 + AT_rich Low_complexity Low_complexity 1 28 0 1522 88 10 0 chr6 161922188 161922393 -27357161 + L1P4 LINE L1 5480 5686 -488 198 300 80 0 chr6 161922601 161922651 -27356903 - L2 LINE L2 -96 3176 3123 317 293 40 60 chr6 161922806 161922956 -27356598 + MIR SINE MIR 51 197 -65 198 303 45 22 chr6 161923797 161923886 -27355668 - L3 LINE CR1 -1084 493 403 396 155 14 0 chr6 161924403 161924474 -27355080 + LTR30 LTR ERV1 552 623 -99 207 0 0 0 chr6 161924474 161924497 -27355057 + (A)n Simple_repeat Simple_repeat 1 23 0 358 247 34 0 chr6 161925210 161925299 -27354255 - L2 LINE L2 -1 3312 3221 267 268 55 61 chr6 161925377 161925541 -27354013 - LTR33A LTR ERVL -80 443 281 392 319 60 18 chr6 161925578 161925744 -27353810 - LTR33 LTR ERVL -317 204 32 1575 201 10 20 chr6 161925956 161926254 -27353300 + AluJo SINE Alu 12 306 -6 1052 289 67 26 chr6 161926510 161926831 -27352723 - L1ME3A LINE L1 -221 6018 5712 2400 77 3 7 chr6 161926831 161927129 -27352425 - AluSp SINE Alu -16 297 1 1052 289 67 26 chr6 161927129 161927597 -27351957 - L1ME3A LINE L1 -527 5712 5190 505 248 76 0 chr6 161927694 161927851 -27351703 + MER58B DNA MER1_type 169 337 -4 902 291 129 45 chr6 161927926 161929526 -27350028 - L1ME3A LINE L1 -1300 4915 3181 349 248 34 20 chr6 161929562 161929711 -27349843 - L1ME3A LINE L1 -3255 2960 2810 559 300 64 42 chr6 161929739 161930037 -27349517 - L1ME3A LINE L1 -3376 2839 2527 1692 46 0 0 chr6 161930037 161930262 -27349292 - AluY SINE Alu 0 310 86 559 300 64 42 chr6 161930262 161930369 -27349185 - L1ME3A LINE L1 -3688 2527 2424 842 238 119 28 chr6 161930665 161930997 -27348557 - MER93b LTR ERV1 -4 399 5 2283 114 0 0 chr6 161930997 161931304 -27348250 + AluSc SINE Alu 1 307 -2 398 268 74 60 chr6 161931306 161931605 -27347949 - L1ME3A LINE L1 -4220 2176 1874 249 272 52 69 chr6 161931626 161931748 -27347806 - L1ME3A LINE L1 -4972 1233 1112 2388 8 4 0 chr6 161931748 161932010 -27347544 + AluYb8 SINE Alu 28 290 -28 217 0 0 0 chr6 161932010 161932034 -27347520 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 249 272 52 69 chr6 161932034 161932083 -27347471 - L1ME3A LINE L1 -5093 1112 1064 907 237 81 0 chr6 161933662 161933860 -27345694 + MER20 DNA MER1_type 6 219 0 698 166 147 25 chr6 161935739 161935902 -27343652 - MER3 DNA MER1_type -17 192 10 820 182 13 13 chr6 161936186 161936340 -27343214 + MER5B DNA MER1_type 5 158 -20 294 216 59 118 chr6 161936824 161936977 -27342577 + MLT1K LTR MaLR 414 557 -31 197 301 27 27 chr6 161938390 161938463 -27341091 + L3 LINE CR1 1488 1560 -17 1152 153 131 51 chr6 161939527 161939763 -27339791 - L1PA15 LINE L1 -3 6162 5908 * 1379 129 43 4 chr6 161939750 161939982 -27339572 - L1PA15 LINE L1 -460 5705 5465 * 2337 238 14 21 chr6 161939972 161940602 -27338952 + L1P LINE L1 3063 3688 -2458 21 0 0 0 chr6 161940613 161940634 -27338920 + AT_rich Low_complexity Low_complexity 1 21 0 607 243 107 24 chr6 161940719 161940888 -27338666 - MIR SINE MIR -55 207 25 361 328 31 8 chr6 161941461 161941589 -27337965 - MIR3 SINE MIR -28 180 50 4802 267 81 30 chr6 161941690 161941766 -27337788 + L1ME1 LINE L1 46 117 -6098 2402 60 0 31 chr6 161941766 161942084 -27337470 - AluY SINE Alu -3 308 1 4802 267 81 30 chr6 161942084 161945064 -27334490 + L1ME1 LINE L1 117 3223 -2992 1969 258 24 26 chr6 161945037 161945697 -27333857 + L1ME1 LINE L1 3753 4411 -1804 * 5175 174 39 22 chr6 161945738 161946803 -27332751 + L1MC3 LINE L1 6702 7783 -2 2951 232 93 17 chr6 161946865 161948397 -27331157 + L1ME1 LINE L1 4570 6215 -20 2200 123 10 3 chr6 161948526 161948836 -27330718 + AluSx SINE Alu 1 312 0 275 247 165 41 chr6 161949778 161949875 -27329679 - MIR SINE MIR -110 152 44 1934 106 0 4 chr6 161950983 161951247 -27328307 + AluSc SINE Alu 11 273 -36 237 65 0 0 chr6 161951249 161951280 -27328274 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1654 213 102 17 chr6 161951387 161951809 -27327745 - MLT1C LTR MaLR 0 467 10 445 284 76 59 chr6 161952967 161953752 -27325802 + L1MEd LINE L1 641 1529 -961 391 305 60 60 chr6 161953854 161953895 -27325659 + L1MEd LINE L1 2104 2144 -3985 2254 124 0 0 chr6 161953895 161954202 -27325352 + AluSq SINE Alu 1 307 -6 391 305 60 60 chr6 161954202 161954557 -27324997 + L1MEd LINE L1 2143 2500 -3629 2166 112 0 10 chr6 161954738 161955050 -27324504 - AluSx SINE Alu -3 309 1 1434 170 12 8 chr6 161955262 161955509 -27324045 - AluJo SINE Alu -26 286 39 361 333 56 39 chr6 161955703 161955937 -27323617 + L2 LINE L2 2040 2277 -1037 372 308 147 24 chr6 161956547 161956758 -27322796 + MIR SINE MIR 19 255 -7 283 312 78 44 chr6 161958076 161958638 -27320916 + L1MEd LINE L1 906 1580 -910 1397 206 54 54 chr6 161958900 161959362 -27320192 + LTR40b LTR ERVL 1 462 0 236 263 20 20 chr6 161959956 161960055 -27319499 + L1MEd LINE L1 2240 2338 -3791 221 284 25 74 chr6 161961568 161961649 -27317905 + L2 LINE L2 3127 3203 -69 669 213 31 12 chr6 161961717 161961877 -27317677 + MER3 DNA MER1_type 1 163 -46 524 316 26 11 chr6 161962246 161962436 -27317118 + L2 LINE L2 1564 1756 -1558 197 339 31 39 chr6 161962637 161962767 -27316787 - MIR SINE MIR -110 152 24 22 35 0 0 chr6 161962767 161962796 -27316758 + AT_rich Low_complexity Low_complexity 1 29 0 2762 144 0 8 chr6 161964227 161964768 -27314786 + L1PA13 LINE L1 4893 5428 -740 1364 86 10 0 chr6 161964768 161964963 -27314591 + L1PA7 LINE L1 5956 6154 0 4520 133 29 4 chr6 161964963 161965685 -27313869 + L1PA13 LINE L1 5413 6159 -4 306 307 80 45 chr6 161965886 161966062 -27313492 + L2 LINE L2 3073 3254 -18 186 236 0 0 chr6 161966545 161966600 -27312954 + GA-rich Low_complexity Low_complexity 4 58 0 180 250 21 21 chr6 161967094 161967142 -27312412 + L2 LINE L2 2898 2945 -368 1098 116 6 50 chr6 161967873 161967947 -27311607 - MER4D LTR ERV1 0 779 703 3885 101 13 0 chr6 161967947 161968494 -27311060 + MER41A LTR ERV1 1 554 0 1098 116 6 50 chr6 161968494 161968600 -27310954 - MER4D LTR ERV1 -76 703 607 3017 168 25 17 chr6 161968967 161969543 -27310011 - MER4D LTR ERV1 -285 544 1 23 54 0 0 chr6 161970018 161970055 -27309499 + AT_rich Low_complexity Low_complexity 1 37 0 230 314 117 21 chr6 161970393 161970581 -27308973 + MIR SINE MIR 29 234 -28 257 238 0 38 chr6 161970594 161970674 -27308880 + (CTA)n Simple_repeat Simple_repeat 1 77 0 697 219 11 51 chr6 161971306 161971484 -27308070 + FAM SINE Alu 2 172 -3 1473 126 5 14 chr6 161972279 161972501 -27307053 + AluSg SINE Alu 6 225 -85 2327 79 3 0 chr6 161973227 161973530 -27306024 - AluY SINE Alu -7 304 1 233 310 90 60 chr6 161974416 161974616 -27304938 - L2 LINE L2 -525 2789 2584 377 331 34 14 chr6 161974927 161975075 -27304479 + MIR3 SINE MIR 36 186 -22 309 220 0 0 chr6 161975976 161976035 -27303519 + MLT1K LTR MaLR 522 580 -8 301 212 15 0 chr6 161976923 161976989 -27302565 - Charlie4 DNA MER1_type -3 1958 1892 497 296 65 58 chr6 161977097 161977357 -27302197 + L2 LINE L2 2560 2821 -493 566 307 74 33 chr6 161977374 161977618 -27301936 - MIR SINE MIR 0 262 9 283 328 47 42 chr6 161977617 161977809 -27301745 + L2 LINE L2 2821 3013 -300 * 3339 121 31 20 chr6 161977867 161978419 -27301135 - LTR10C LTR ERV1 -28 529 1 254 224 303 0 chr6 161978557 161978633 -27300921 + MLT1L LTR MaLR 155 253 -362 1977 138 39 36 chr6 161978644 161979007 -27300547 + THE1B LTR MaLR 1 364 0 726 194 0 0 chr6 161979229 161979358 -27300196 - FLAM_A SINE Alu -4 129 1 486 288 93 34 chr6 161979460 161979696 -27299858 + L2 LINE L2 3019 3268 -45 282 257 14 14 chr6 161979761 161979831 -27299723 + MIR SINE MIR 176 245 -17 227 114 0 0 chr6 161979864 161979899 -27299655 + L2 LINE L2 3278 3312 -1 216 200 25 0 chr6 161980131 161980171 -27299383 - L2 LINE L2 -64 3208 3168 936 331 40 60 chr6 161981262 161981303 -27298251 + L3 LINE CR1 430 470 -1107 2382 163 52 0 chr6 161981303 161981708 -27297846 + MSTB LTR MaLR 1 426 0 936 331 40 60 chr6 161981708 161982095 -27297459 + L3 LINE CR1 470 843 -734 1354 206 107 21 chr6 161982095 161982479 -27297075 + LTR52 LTR ERVL 1 417 -4 936 331 40 60 chr6 161982479 161982695 -27296859 + L3 LINE CR1 843 1062 -515 * 1920 235 149 39 chr6 161982694 161983537 -27296017 + L2 LINE L2 2128 3062 -251 384 304 36 91 chr6 161983629 161983882 -27295672 + L3 LINE CR1 1165 1403 -174 2359 95 0 0 chr6 161984077 161984371 -27295183 - AluSq SINE Alu -19 294 1 360 0 0 0 chr6 161984578 161984618 -27294936 + (CA)n Simple_repeat Simple_repeat 2 41 0 182 37 37 0 chr6 161985575 161985602 -27293952 + (CA)n Simple_repeat Simple_repeat 2 29 0 464 271 113 20 chr6 161986373 161986524 -27293030 + MIR SINE MIR 67 231 -31 342 301 0 0 chr6 161986549 161986632 -27292922 - MIR3 SINE MIR -25 183 101 290 281 113 67 chr6 161987636 161987874 -27291680 - MIR SINE MIR -6 256 8 1490 198 15 76 chr6 161987920 161988314 -27291240 + MLT1A2 LTR MaLR 1 370 -4 510 244 16 16 chr6 161989452 161989575 -27289979 - MIR3 SINE MIR -14 194 72 1743 94 0 33 chr6 161990495 161990740 -27288814 + AluSg/x SINE Alu 76 312 0 740 190 0 0 chr6 161993424 161993540 -27286014 + FLAM_C SINE Alu 1 116 -17 2523 62 0 3 chr6 161993578 161993884 -27285670 - AluY SINE Alu -6 305 1 829 226 6 47 chr6 161993885 161994151 -27285403 + MLT1B LTR MaLR 128 388 -2 21 0 0 0 chr6 161994194 161994215 -27285339 + AT_rich Low_complexity Low_complexity 1 21 0 1194 150 21 6 chr6 161994243 161994530 -27285024 + MER47A DNA MER2_type 1 366 0 350 330 39 0 chr6 161994576 161994679 -27284875 + L2 LINE L2 3166 3272 0 243 228 60 48 chr6 161996377 161996544 -27283010 + HsTC2 DNA Tc2 1727 1895 -3 738 213 0 0 chr6 161996718 161996840 -27282714 + FLAM_A SINE Alu 1 122 -11 209 316 151 22 chr6 161997583 161997722 -27281832 + L2 LINE L2 2905 3061 -211 407 219 31 10 chr6 161998004 161998100 -27281454 + MER58 DNA MER1_type 1 98 -117 2409 92 0 0 chr6 161998173 161998476 -27281078 + AluSc SINE Alu 1 303 -6 2298 96 3 19 chr6 161999087 161999431 -27280123 - AluSc SINE Alu 0 339 1 185 294 0 0 chr6 161999440 161999491 -27280063 - L2 LINE L2 -1016 2298 2248 218 332 130 36 chr6 161999524 161999747 -27279807 - L2 LINE L2 -1153 2161 1918 279 344 110 37 chr6 161999848 162000066 -27279488 + MIR SINE MIR 29 262 0 2333 121 9 0 chr6 162000987 162001318 -27278236 - MER1B DNA MER1_type 0 337 4 559 285 19 13 chr6 162002410 162002568 -27276986 + MIR SINE MIR 70 228 -34 2632 192 46 40 chr6 162002931 162003560 -27275994 + LTR27 LTR ERV1 4 636 0 2672 78 18 44 chr6 162004291 162004505 -27275049 - THE1C LTR MaLR 0 375 157 1520 74 111 100 chr6 162004505 162004776 -27274778 + AluY SINE Alu 1 274 -37 203 0 37 0 chr6 162004783 162004810 -27274744 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 2672 78 18 44 chr6 162004810 162004972 -27274582 - THE1C LTR MaLR -224 151 1 208 231 0 0 chr6 162006481 162006520 -27273034 + polypurine Low_complexity Low_complexity 4 42 0 219 146 0 0 chr6 162006927 162006968 -27272586 + (TAAAAA)n Simple_repeat Simple_repeat 5 45 0 645 183 74 23 chr6 162007031 162007206 -27272348 + MER105 DNA DNA 4 187 -17 369 43 0 0 chr6 162007324 162007371 -27272183 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr6 162008224 162008252 -27271302 + AT_rich Low_complexity Low_complexity 1 28 0 703 234 37 21 chr6 162008730 162008918 -27270636 + MIR SINE MIR 70 260 -2 316 270 75 46 chr6 162009671 162009845 -27269709 - L2 LINE L2 0 3313 3135 1749 132 97 23 chr6 162010041 162010390 -27269164 + THE1C LTR MaLR 1 375 0 192 333 0 0 chr6 162010730 162010778 -27268776 - MIR SINE MIR -183 79 32 231 291 116 12 chr6 162011669 162011755 -27267799 - MIR SINE MIR -51 211 117 1993 94 83 0 chr6 162012983 162013260 -27266294 - AluSg SINE Alu -10 300 1 1412 171 88 18 chr6 162013900 162014174 -27265380 - AluJo SINE Alu -19 293 1 325 294 49 55 chr6 162014226 162014389 -27265165 - MIR SINE MIR -17 245 84 2211 123 0 3 chr6 162014418 162014727 -27264827 + AluSq SINE Alu 1 308 -5 2044 131 7 0 chr6 162015922 162016212 -27263342 + AluSq SINE Alu 2 293 -20 294 373 36 0 chr6 162016566 162016676 -27262878 + L2 LINE L2 3149 3262 -10 2263 99 17 0 chr6 162018302 162018604 -27260950 - AluSp SINE Alu -6 307 1 2243 103 7 3 chr6 162018627 162018929 -27260625 + AluSq SINE Alu 1 303 -10 3624 188 14 57 chr6 162019853 162021287 -27258267 + L1MB5 LINE L1 4777 6153 -21 3805 141 34 34 chr6 162022207 162022933 -27256621 + LTR8A LTR ERV1 1 726 -1 2858 205 18 69 chr6 162023698 162024519 -27255035 + MER4E LTR ERV1 1 779 0 810 124 8 16 chr6 162025116 162025274 -27254280 - FLAM_C SINE Alu 0 133 1 2097 135 0 0 chr6 162025715 162026018 -27253536 + AluSx SINE Alu 1 303 -9 421 286 129 0 chr6 162026352 162026507 -27253047 + MIR SINE MIR 8 178 -64 2558 50 0 0 chr6 162027014 162027313 -27252241 + AluY SINE Alu 1 299 -12 395 283 183 57 chr6 162028395 162028529 -27251025 + MIR SINE MIR 2 118 -144 2587 116 0 2 chr6 162028529 162028927 -27250627 + L1PA13 LINE L1 5764 6160 -3 395 283 183 57 chr6 162028927 162029022 -27250532 + MIR SINE MIR 118 260 -2 346 352 71 82 chr6 162029147 162029596 -27249958 + L2 LINE L2 2828 3271 -1 2197 105 0 0 chr6 162030823 162031137 -27248417 - AluSx SINE Alu 0 314 1 23 0 0 0 chr6 162032512 162032535 -27247019 + AT_rich Low_complexity Low_complexity 1 23 0 701 269 103 49 chr6 162032680 162033030 -27246524 + L2 LINE L2 2942 3310 -3 360 0 0 0 chr6 162033116 162033156 -27246398 + (CA)n Simple_repeat Simple_repeat 1 40 0 2386 98 0 0 chr6 162033363 162033660 -27245894 + AluSg SINE Alu 1 297 -13 21 0 0 0 chr6 162033643 162033664 -27245890 + AT_rich Low_complexity Low_complexity 1 21 0 778 270 58 9 chr6 162033721 162033947 -27245607 - ERVL LTR ERVL -1342 4422 4186 457 158 105 0 chr6 162034763 162034858 -27244696 - MIR SINE MIR -10 252 148 1089 256 36 27 chr6 162034858 162035190 -27244364 - MER46C DNA MER2_type -2 336 2 378 392 9 5 chr6 162035374 162035591 -27243963 - ERVL LTR ERVL -5138 626 409 546 300 68 28 chr6 162035950 162036407 -27243147 - LTR33 LTR ERVL 0 521 15 393 282 132 0 chr6 162036422 162036566 -27242988 - MIR SINE MIR -41 167 3 1541 197 0 30 chr6 162037088 162037387 -27242167 + AluJo SINE Alu 1 290 -22 455 300 97 28 chr6 162037830 162038203 -27241351 - L1MEc LINE L1 -3677 2538 2179 259 278 7 90 chr6 162038232 162038376 -27241178 + L1M4 LINE L1 4037 4168 -1978 304 299 93 44 chr6 162038512 162038944 -27240610 + L1M4 LINE L1 4358 4810 -1336 327 286 69 51 chr6 162039103 162039278 -27240276 - L1MDa LINE L1 -3318 3222 3045 748 139 7 36 chr6 162039534 162039671 -27239883 - FLAM_C SINE Alu -10 133 1 405 302 58 22 chr6 162039672 162040054 -27239500 - L1MDa LINE L1 -3705 2835 2442 29 70 0 0 chr6 162040260 162040317 -27239237 + AT_rich Low_complexity Low_complexity 1 57 0 200 301 48 36 chr6 162040479 162040562 -27238992 - L2 LINE L2 -234 3038 2955 420 275 129 11 chr6 162040583 162040761 -27238793 + Charlie8 DNA MER1_type 47 245 -2172 384 350 76 35 chr6 162040855 162041224 -27238330 - L2 LINE L2 -569 2745 2362 213 326 139 0 chr6 162041237 162041323 -27238231 + L2 LINE L2 3156 3253 -19 305 272 87 0 chr6 162041379 162041471 -27238083 - L2 LINE L2 -996 2318 2219 201 139 0 0 chr6 162042060 162042103 -27237451 + (A)n Simple_repeat Simple_repeat 1 43 0 1758 305 96 64 chr6 162042462 162042662 -27236892 - L1MC5 LINE L1 -94 7867 7675 1409 171 53 50 chr6 162042662 162042975 -27236579 + AluJb SINE Alu 1 314 0 1758 305 96 64 chr6 162042975 162043913 -27235641 - L1MC5 LINE L1 -286 7675 6692 273 328 35 35 chr6 162044015 162044131 -27235423 + L2 LINE L2 3150 3265 -7 1441 221 39 11 chr6 162044161 162044519 -27235035 + MLT1C LTR MaLR 100 467 0 2514 58 3 0 chr6 162044561 162044870 -27234684 - AluY SINE Alu -1 310 1 443 127 0 0 chr6 162044902 162044965 -27234589 + AluS SINE Alu 2 64 -245 460 174 52 17 chr6 162044966 162045081 -27234473 + MER66A LTR ERV1 360 478 0 204 362 0 0 chr6 162045472 162045541 -27234013 + MIR SINE MIR 38 106 -102 359 314 51 24 chr6 162045644 162045899 -27233655 + MIR SINE MIR 1 262 0 46 19 0 0 chr6 162046202 162046255 -27233299 + AT_rich Low_complexity Low_complexity 1 53 0 314 250 0 11 chr6 162047012 162047104 -27232450 + L1MC4 LINE L1 7576 7666 -376 2028 147 0 6 chr6 162047318 162047631 -27231923 - AluSx SINE Alu 0 312 2 187 294 87 0 chr6 162048615 162048707 -27230847 + MIR SINE MIR 147 246 -16 783 285 62 4 chr6 162049009 162049251 -27230303 + MIR SINE MIR 7 262 0 215 283 159 9 chr6 162050467 162050580 -27228974 + MIR SINE MIR 92 221 -41 1324 196 98 25 chr6 162052052 162052557 -27226997 + L1MB3 LINE L1 5109 5651 -532 1329 220 24 82 chr6 162052557 162052970 -27226584 + MSTD LTR MaLR 1 389 -7 536 180 0 20 chr6 162052970 162053070 -27226484 + L1MB3 LINE L1 5646 5743 -440 1897 160 34 6 chr6 162053075 162053431 -27226123 + L1MB3 LINE L1 5809 6174 -9 630 282 104 0 chr6 162053454 162053674 -27225880 + MIR SINE MIR 20 262 0 358 337 209 5 chr6 162055269 162055456 -27224098 + MIR SINE MIR 20 244 -18 22 35 0 0 chr6 162055961 162055990 -27223564 + AT_rich Low_complexity Low_complexity 1 29 0 231 391 65 30 chr6 162056328 162056558 -27222996 - LTR16C LTR ERVL -102 389 152 21 57 0 0 chr6 162057208 162057243 -27222311 + AT_rich Low_complexity Low_complexity 1 35 0 381 246 114 48 chr6 162057381 162057653 -27221901 + L1MEd LINE L1 1331 1620 -4910 376 278 95 34 chr6 162057725 162057957 -27221597 + L1MEd LINE L1 1615 1941 -4599 360 316 51 31 chr6 162057963 162058159 -27221395 + L1MEd LINE L1 2449 2648 -3892 2762 137 162 26 chr6 162058181 162058824 -27220730 + L1 LINE L1 4089 4818 -1328 1944 170 46 25 chr6 162058825 162059261 -27220293 - L1 LINE L1 -1393 4753 4309 1326 124 9 0 chr6 162059263 162059473 -27220081 + L1MA2 LINE L1 6093 6304 0 33 0 0 0 chr6 162059473 162059506 -27220048 + AT_rich Low_complexity Low_complexity 1 33 0 225 284 88 31 chr6 162059506 162059767 -27219787 + L1MEd LINE L1 2683 2958 -3582 330 196 20 49 chr6 162060061 162060163 -27219391 - L1MC5 LINE L1 -45 7916 7818 448 202 123 9 chr6 162060287 162060401 -27219153 - L1MC5 LINE L1 -324 7637 7511 1578 282 45 22 chr6 162060481 162061016 -27218538 + MLT1H1 LTR MaLR 1 547 -8 345 317 114 21 chr6 162061444 162061778 -27217776 + L1P LINE L1 3545 3909 -2237 31 26 0 0 chr6 162062090 162062128 -27217426 + AT_rich Low_complexity Low_complexity 1 38 0 391 272 94 43 chr6 162062622 162062876 -27216678 + L1ME4a LINE L1 5376 5642 -479 1771 116 77 7 chr6 162062993 162063278 -27216276 - AluSx SINE Alu -7 305 1 328 298 71 30 chr6 162063305 162063503 -27216051 + L1ME4a LINE L1 5714 5919 -202 198 371 0 0 chr6 162065677 162065747 -27213807 - MIR SINE MIR -109 99 30 23 0 0 0 chr6 162066082 162066105 -27213449 + AT_rich Low_complexity Low_complexity 1 23 0 772 277 25 41 chr6 162066765 162067007 -27212547 - MIR SINE MIR -10 252 15 5226 179 36 22 chr6 162067236 162068649 -27210905 + L1MA9 LINE L1 4876 6312 0 24 0 0 0 chr6 162068726 162068750 -27210804 + AT_rich Low_complexity Low_complexity 1 24 0 366 300 12 38 chr6 162068787 162068947 -27210607 - L2 LINE L2 0 3313 3158 37 23 0 0 chr6 162069055 162069099 -27210455 + AT_rich Low_complexity Low_complexity 1 44 0 279 266 0 47 chr6 162069776 162069840 -27209714 + L2 LINE L2 3122 3182 -90 659 335 57 55 chr6 162070150 162070606 -27208948 - MLT1K LTR MaLR 0 588 132 314 203 14 40 chr6 162070790 162070864 -27208690 - L2 LINE L2 0 3313 3242 807 281 68 20 chr6 162071216 162071465 -27208089 - MIR SINE MIR 0 262 2 2207 169 23 64 chr6 162071752 162072238 -27207316 + MLT1C LTR MaLR 2 467 0 569 323 43 24 chr6 162073262 162073516 -27206038 + MIR SINE MIR 2 260 -2 3178 164 55 205 chr6 162073540 162073893 -27205661 + L1MC3 LINE L1 5917 6321 -1464 2024 151 0 0 chr6 162073893 162074198 -27205356 + AluSx SINE Alu 1 305 -7 3178 164 55 205 chr6 162074198 162075163 -27204391 + L1MC3 LINE L1 6321 7017 -768 256 319 53 9 chr6 162076013 162076126 -27203428 - MIR SINE MIR -125 137 20 25 51 0 0 chr6 162076915 162076954 -27202600 + AT_rich Low_complexity Low_complexity 1 39 0 2170 123 3 0 chr6 162077557 162077859 -27201695 + AluSx SINE Alu 1 303 -9 1196 183 100 4 chr6 162078625 162078865 -27200689 + AluJo SINE Alu 36 298 -14 288 0 0 0 chr6 162079150 162079182 -27200372 + (TA)n Simple_repeat Simple_repeat 2 33 0 410 232 95 134 chr6 162079195 162079501 -27200053 - L2 LINE L2 -7 3306 3013 1051 206 81 34 chr6 162079504 162079824 -27199730 + LTR56 LTR ERV1 3 337 -108 345 145 79 0 chr6 162079853 162079929 -27199625 + LTR23 LTR ERV1 353 434 -3 214 331 0 31 chr6 162080066 162080196 -27199358 + CT-rich Low_complexity Low_complexity 1 126 0 22 70 0 0 chr6 162080467 162080510 -27199044 + AT_rich Low_complexity Low_complexity 1 43 0 360 295 93 0 chr6 162080872 162081001 -27198553 + MIR SINE MIR 105 245 -17 201 74 0 0 chr6 162081009 162081036 -27198518 + (CTG)n Simple_repeat Simple_repeat 2 28 0 1845 191 82 61 chr6 162081579 162082088 -27197466 - MLT2B1 LTR ERVL 0 520 1 1740 196 78 55 chr6 162082091 162082633 -27196921 - L1M4 LINE L1 -2055 4589 4036 * 3585 250 40 24 chr6 162082631 162083551 -27196003 - L1M4 LINE L1 -5574 968 34 24 32 0 0 chr6 162083848 162083879 -27195675 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr6 162083903 162083926 -27195628 + AT_rich Low_complexity Low_complexity 1 23 0 835 327 84 25 chr6 162085231 162085800 -27193754 + L2 LINE L2 1915 2517 -797 555 243 78 14 chr6 162085874 162086092 -27193462 + MLT1L LTR MaLR 149 380 -235 531 221 99 55 chr6 162086222 162086403 -27193151 - MER5A DNA MER1_type 0 189 1 495 365 61 3 chr6 162086490 162086783 -27192771 + L2 LINE L2 2448 2757 -557 269 353 37 74 chr6 162086834 162087211 -27192343 + L2 LINE L2 2837 3199 -73 401 248 77 36 chr6 162087323 162087459 -27192095 - MIR SINE MIR -54 154 15 195 287 149 23 chr6 162088033 162088120 -27191434 + L2 LINE L2 3155 3252 -20 450 238 8 0 chr6 162089066 162089188 -27190366 + L1MC4 LINE L1 7684 7806 -236 301 259 111 0 chr6 162092872 162092953 -27186601 + L2 LINE L2 3215 3304 -9 11561 102 12 2 chr6 162094320 162096102 -27183452 + L1P LINE L1 3464 5263 -883 30 27 0 0 chr6 162096920 162096957 -27182597 + AT_rich Low_complexity Low_complexity 1 37 0 308 205 134 16 chr6 162096965 162097092 -27182462 + L1ME4a LINE L1 5980 6121 0 22 0 0 0 chr6 162097427 162097449 -27182105 + AT_rich Low_complexity Low_complexity 1 22 0 343 320 90 0 chr6 162097787 162097909 -27181645 - L2 LINE L2 0 3313 3181 225 196 0 0 chr6 162098035 162098081 -27181473 + CT-rich Low_complexity Low_complexity 3 48 0 987 190 111 4 chr6 162098096 162098375 -27181179 + MER33 DNA MER1_type 1 309 -15 2209 74 10 55 chr6 162099498 162099808 -27179746 - AluY SINE Alu -13 298 3 607 297 127 39 chr6 162099964 162100429 -27179125 - L2 LINE L2 0 3313 2808 509 201 36 107 chr6 162100448 162100516 -27179038 + L1MC4 LINE L1 7702 7773 -269 1897 153 93 52 chr6 162100516 162100955 -27178599 - MSTB2 LTR MaLR 0 457 1 509 201 36 107 chr6 162100955 162101110 -27178444 + L1MC4 LINE L1 7773 7909 -133 182 364 13 0 chr6 162101154 162101231 -27178323 + L2 LINE L2 2703 2780 -534 499 246 31 62 chr6 162101507 162101702 -27177852 - MER115 DNA AcHobo -43 650 462 1846 182 106 5 chr6 162101769 162102175 -27177379 - MER54A LTR ERVL -2 899 453 342 0 0 0 chr6 162102293 162102331 -27177223 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chr6 162102565 162102603 -27176951 + AT_rich Low_complexity Low_complexity 1 38 0 2853 180 27 13 chr6 162102690 162103241 -27176313 + MER89 LTR ERV1 1 559 0 576 252 26 20 chr6 162104062 162104213 -27175341 + MER5A DNA MER1_type 36 187 -2 185 368 92 33 chr6 162104229 162104566 -27174988 + L2 LINE L2 2174 2530 -784 242 289 189 0 chr6 162104606 162104696 -27174858 - L2 LINE L2 -15 3257 3151 306 279 38 33 chr6 162105111 162105294 -27174260 - HAL1 LINE L1 0 2507 2324 1194 248 49 18 chr6 162105734 162106061 -27173493 + MER58B DNA MER1_type 4 340 -1 1999 113 26 26 chr6 162107114 162107416 -27172138 + AluSq SINE Alu 1 302 -11 1608 189 3 7 chr6 162108460 162108746 -27170808 - AluJb SINE Alu -27 285 1 252 326 0 0 chr6 162109764 162109850 -27169704 - MARNA DNA Mariner -417 169 84 738 273 0 0 chr6 162109869 162110023 -27169531 + MIR SINE MIR 3 156 -106 316 333 72 22 chr6 162111293 162111473 -27168081 + MER5A DNA MER1_type 1 189 0 2106 97 12 50 chr6 162111719 162112039 -27167515 + AluSq SINE Alu 1 308 -5 237 241 0 0 chr6 162113442 162113500 -27166054 - MIR SINE MIR -4 258 201 326 293 57 47 chr6 162113785 162113891 -27165663 - MIR SINE MIR -62 146 40 2086 149 7 0 chr6 162114079 162114380 -27165174 - AluSx SINE Alu -9 303 1 21 0 0 0 chr6 162114656 162114677 -27164877 + AT_rich Low_complexity Low_complexity 1 21 0 294 428 57 0 chr6 162115303 162115462 -27164092 - L2 LINE L2 -230 3042 2875 194 260 39 26 chr6 162115714 162115791 -27163763 - L2 LINE L2 -1105 2209 2132 1199 209 219 70 chr6 162116283 162116486 -27163068 + L1MC4 LINE L1 7214 7385 -657 2034 98 49 3 chr6 162116486 162116773 -27162781 + AluSc SINE Alu 1 300 -9 2639 145 121 4 chr6 162116777 162117274 -27162280 + LTR64 LTR ERVK 3 557 -1 1199 209 219 70 chr6 162117274 162117519 -27162035 + L1MC4 LINE L1 7387 7594 -448 2296 109 13 0 chr6 162117519 162117821 -27161733 + AluSc SINE Alu 1 306 -3 1199 209 219 70 chr6 162117821 162118083 -27161471 + L1MC4 LINE L1 7594 8037 -5 189 0 0 0 chr6 162118587 162118608 -27160946 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 4044 20 0 0 chr6 162118611 162119071 -27160483 - L1PA3 LINE L1 -13 6142 5683 481 271 90 18 chr6 162119086 162119252 -27160302 - MIR SINE MIR -50 212 35 503 260 177 17 chr6 162119369 162119719 -27159835 + L1ME4a LINE L1 5612 6017 -104 21 23 0 47 chr6 162120175 162120195 -27159359 + AT_rich Low_complexity Low_complexity 1 20 -21 1293 190 27 17 chr6 162120195 162120490 -27159064 + L1MC1 LINE L1 6030 6327 -6 21 23 0 47 chr6 162120490 162120512 -27159042 + AT_rich Low_complexity Low_complexity 20 41 0 243 274 0 0 chr6 162120589 162120651 -27158903 + (GATTG)n Simple_repeat Simple_repeat 4 65 0 228 191 34 67 chr6 162120736 162120825 -27158729 + L1MC4 LINE L1 6618 6703 -1339 204 344 107 23 chr6 162120849 162120980 -27158574 - L2 LINE L2 -8 3264 3123 213 324 189 38 chr6 162121299 162121451 -27158103 - L2 LINE L2 -436 2878 2750 2136 126 7 0 chr6 162121451 162121761 -27157793 - AluSx SINE Alu 0 312 1 213 324 189 38 chr6 162121761 162122133 -27157421 - L2 LINE L2 -564 2750 2275 208 204 0 41 chr6 162123898 162123947 -27155607 + (AAATG)n Simple_repeat Simple_repeat 4 50 0 26 0 0 0 chr6 162124139 162124165 -27155389 + AT_rich Low_complexity Low_complexity 1 26 0 1983 122 3 10 chr6 162124444 162124738 -27154816 + AluSx SINE Alu 1 292 -20 1351 170 154 6 chr6 162125404 162125722 -27153832 - MLT1A1 LTR MaLR 0 365 1 2424 126 20 0 chr6 162127633 162127990 -27151564 - THE1B LTR MaLR 0 364 1 795 199 0 68 chr6 162128159 162128365 -27151189 + MER58A DNA MER1_type 33 224 0 738 260 94 9 chr6 162128372 162128595 -27150959 - L2 LINE L2 -356 2958 2717 1292 157 173 12 chr6 162128647 162128902 -27150652 + AluJo SINE Alu 11 306 -6 1109 258 39 81 chr6 162128935 162129427 -27150127 - L2 LINE L2 -692 2622 2152 222 225 143 14 chr6 162129488 162129586 -27149968 - MIR SINE MIR -63 145 77 3289 164 38 35 chr6 162129591 162130166 -27149388 + MER50 LTR ERV1 1 580 -154 2308 83 35 0 chr6 162130166 162130456 -27149098 - AluSx SINE Alu -12 300 1 3289 164 38 35 chr6 162130456 162130589 -27148965 + MER50 LTR ERV1 580 711 -23 304 229 0 43 chr6 162131901 162131971 -27147583 + L2 LINE L2 3201 3267 -5 486 0 0 0 chr6 162132613 162132667 -27146887 + (TG)n Simple_repeat Simple_repeat 2 55 0 2000 105 0 0 chr6 162133647 162133913 -27145641 + AluSx SINE Alu 1 266 -46 451 150 12 0 chr6 162134112 162134192 -27145362 + Tigger6 DNA MER2_type 95 175 -908 23 0 0 0 chr6 162134605 162134628 -27144926 + AT_rich Low_complexity Low_complexity 1 23 0 2290 104 0 0 chr6 162134717 162135014 -27144540 + AluSx SINE Alu 1 297 -15 1640 108 0 9 chr6 162135014 162135236 -27144318 + AluSp SINE Alu 76 296 -17 636 255 51 19 chr6 162135360 162135576 -27143978 + L2 LINE L2 2412 2634 -680 359 325 69 45 chr6 162137354 162137600 -27141954 - MIR SINE MIR -6 256 5 186 194 0 0 chr6 162137772 162137808 -27141746 + MER5A DNA MER1_type 136 171 -18 204 294 178 41 chr6 162137933 162138079 -27141475 + L2 LINE L2 3108 3273 -40 302 276 46 23 chr6 162140824 162140911 -27138643 + L1M2 LINE L1 537 625 -6224 198 0 0 0 chr6 162141989 162142011 -27137543 + (TA)n Simple_repeat Simple_repeat 1 22 0 214 186 0 0 chr6 162143818 162143861 -27135693 + (TA)n Simple_repeat Simple_repeat 1 43 0 203 297 171 36 chr6 162146058 162146169 -27133385 + MIR3 SINE MIR 46 171 -37 234 277 106 35 chr6 162146402 162146543 -27133011 - L2 LINE L2 -280 2992 2842 347 277 156 0 chr6 162147146 162147287 -27132267 - MER20B DNA MER1_type -620 163 1 278 296 0 0 chr6 162147294 162147365 -27132189 + MIR SINE MIR 119 189 -73 2265 88 7 0 chr6 162147644 162147940 -27131614 + AluSg SINE Alu 1 298 -12 1203 140 38 45 chr6 162148086 162148350 -27131204 + AluSg SINE Alu 37 298 -12 22 35 0 0 chr6 162148504 162148533 -27131021 + AT_rich Low_complexity Low_complexity 1 29 0 1259 196 107 4 chr6 162148611 162148881 -27130673 - AluJb SINE Alu -9 303 6 383 309 0 0 chr6 162149484 162149581 -27129973 + MIR3 SINE MIR 89 185 -23 916 171 76 0 chr6 162150284 162150442 -27129112 - AluJ SINE Alu -7 305 136 324 0 0 0 chr6 162150456 162150492 -27129062 + (TG)n Simple_repeat Simple_repeat 1 36 0 318 182 91 0 chr6 162150527 162150593 -27128961 - AluJ SINE Alu -168 134 63 833 228 76 19 chr6 162152023 162152234 -27127320 - MER58A DNA MER1_type -1 223 1 1774 166 3 3 chr6 162152389 162152697 -27126857 - AluJb SINE Alu -4 308 1 2293 104 0 0 chr6 162153125 162153432 -27126122 + AluSx SINE Alu 1 307 -5 1411 139 109 18 chr6 162155050 162155324 -27124230 - L1MC1 LINE L1 0 6333 6035 6716 236 48 24 chr6 162155331 162155491 -27124063 - L1MEc LINE L1 -1677 4749 4594 1595 176 37 3 chr6 162155491 162155786 -27123768 - AluJo SINE Alu -5 307 3 6716 236 48 24 chr6 162155786 162158009 -27121545 - L1MEc LINE L1 -1832 4594 2349 10305 160 89 37 chr6 162158126 162160384 -27119170 - L1MEc LINE L1 -4031 2395 21 291 337 61 17 chr6 162160632 162160813 -27118741 + L3b LINE CR1 1121 1309 -274 417 263 5 137 chr6 162160822 162161027 -27118527 - MER5B DNA MER1_type 0 178 1 1844 154 3 7 chr6 162161374 162161679 -27117875 + AluSx SINE Alu 1 304 -8 189 74 0 0 chr6 162161682 162161709 -27117845 + (CTAAA)n Simple_repeat Simple_repeat 4 30 0 181 243 0 0 chr6 162161766 162161803 -27117751 - MIR SINE MIR -120 142 106 185 310 0 17 chr6 162163113 162163171 -27116383 - MIR3 SINE MIR -11 197 141 1403 154 82 32 chr6 162163264 162163544 -27116010 + AluJo SINE Alu 4 297 -15 373 264 126 46 chr6 162164522 162164761 -27114793 - HAL1 LINE L1 -22 2485 2228 408 291 87 6 chr6 162165303 162165376 -27114178 - HAL1 LINE L1 -698 1809 1743 231 88 0 0 chr6 162165376 162165410 -27114144 + (TG)n Simple_repeat Simple_repeat 1 34 0 408 291 87 6 chr6 162165410 162165508 -27114046 - HAL1 LINE L1 -764 1743 1624 334 291 135 29 chr6 162165673 162165917 -27113637 - HAL1 LINE L1 -1098 1409 1140 2663 221 62 20 chr6 162166607 162167387 -27112167 - L1M4 LINE L1 -1488 4658 3847 22 0 0 0 chr6 162167603 162167625 -27111929 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr6 162167891 162167918 -27111636 + (TG)n Simple_repeat Simple_repeat 2 28 0 609 299 139 0 chr6 162167959 162168160 -27111394 + MIR SINE MIR 28 256 -6 282 95 0 0 chr6 162168163 162168205 -27111349 + (ATGGTG)n Simple_repeat Simple_repeat 4 45 0 267 310 93 31 chr6 162169289 162169418 -27110136 - MIR SINE MIR -74 188 52 239 133 22 0 chr6 162169475 162169520 -27110034 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 387 307 104 12 chr6 162169825 162169988 -27109566 + MIR SINE MIR 85 262 0 549 88 0 0 chr6 162171054 162171134 -27108420 + (CTA)n Simple_repeat Simple_repeat 1 80 0 26 0 0 0 chr6 162171191 162171217 -27108337 + AT_rich Low_complexity Low_complexity 1 26 0 269 203 34 0 chr6 162171532 162171591 -27107963 + MIR SINE MIR 191 251 -11 609 301 56 8 chr6 162171628 162171877 -27107677 + MIR SINE MIR 2 262 0 22 0 0 0 chr6 162172857 162172879 -27106675 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 162173539 162173561 -27105993 + AT_rich Low_complexity Low_complexity 1 22 0 897 204 58 80 chr6 162173610 162174010 -27105544 - L1MD2 LINE L1 -4 6355 5952 2010 145 3 0 chr6 162174010 162174307 -27105247 - AluSg SINE Alu -12 298 1 182 361 216 10 chr6 162174934 162175128 -27104426 - L3b LINE CR1 -8 1575 1342 195 296 32 88 chr6 162175267 162175321 -27104233 - MER5B DNA MER1_type -25 153 98 1367 172 126 63 chr6 162175321 162175751 -27103803 - MSTB2 LTR MaLR 0 457 1 195 296 32 88 chr6 162175751 162175821 -27103733 - MER5B DNA MER1_type -80 98 36 752 284 58 16 chr6 162176761 162177074 -27102480 - L1MC4a LINE L1 -1870 5938 5613 2171 108 3 0 chr6 162177176 162177473 -27102081 - AluSx SINE Alu -14 298 1 211 213 21 0 chr6 162177604 162177651 -27101903 + (TATG)n Simple_repeat Simple_repeat 3 50 0 1857 152 60 58 chr6 162178331 162178745 -27100809 - L1MC2 LINE L1 -8 6730 6316 691 219 8 0 chr6 162178748 162178876 -27100678 + Tigger3b DNA MER2_type 2 130 -1101 6260 130 54 25 chr6 162178963 162180074 -27099480 + Tigger3b DNA MER2_type 89 1231 0 2879 197 47 33 chr6 162180076 162181220 -27098334 - L1MC2 LINE L1 -743 5797 5168 1085 196 21 1 chr6 162181220 162181518 -27098036 - MER2 DNA MER2_type 0 345 1 748 230 11 0 chr6 162181518 162181696 -27097858 - L1MC2 LINE L1 -1377 5163 4984 310 289 20 34 chr6 162181739 162181888 -27097666 + MER104 DNA Tc2 31 177 -3 545 283 39 13 chr6 162181984 162182217 -27097337 - L1MC2 LINE L1 -4667 1873 1635 1189 110 23 0 chr6 162182219 162182392 -27097162 - AluSg/x SINE Alu -7 303 127 468 118 11 54 chr6 162182399 162182492 -27097062 - MLT1B LTR MaLR -293 97 9 1802 218 54 11 chr6 162182814 162183255 -27096299 + MLT1C LTR MaLR 1 460 -7 2077 114 0 20 chr6 162185223 162185529 -27094025 + AluSx SINE Alu 1 300 -12 446 250 294 5 chr6 162185704 162185888 -27093666 + L1ME LINE L1 5404 5640 -530 2084 213 71 35 chr6 162185898 162186500 -27093054 + MLT1E3 LTR MaLR 1 624 0 654 247 7 0 chr6 162186511 162186657 -27092897 + MLT1E3-int LTR MaLR 4 150 -1221 863 226 64 45 chr6 162186684 162187012 -27092542 + MLT1E3-int LTR MaLR 307 664 -707 743 322 39 46 chr6 162187144 162187560 -27091994 + MLT1E3-int LTR MaLR 697 1109 -262 1183 164 8 2 chr6 162187561 162187834 -27091720 - MER2 DNA MER2_type 0 345 9 850 114 0 0 chr6 162188102 162188225 -27091329 + AluSp/q SINE Alu 189 311 -2 7494 91 21 2 chr6 162188234 162189773 -27089781 + L1P3 LINE L1 20 1764 -4687 1430 85 50 0 chr6 162189873 162190073 -27089481 + L1PA7 LINE L1 5854 6063 -91 213 39 0 0 chr6 162190197 162190223 -27089331 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1171 160 19 92 chr6 162190244 162190506 -27089048 - AluJb SINE Alu -69 243 1 225 197 33 33 chr6 162190665 162190726 -27088828 - LTR33A LTR ERVL -14 509 449 191 321 83 0 chr6 162191269 162191353 -27088201 - L2 LINE L2 -559 2755 2665 225 342 0 40 chr6 162191479 162191555 -27087999 - L2 LINE L2 -6 3266 3194 21 0 0 0 chr6 162192045 162192066 -27087488 + AT_rich Low_complexity Low_complexity 1 21 0 415 272 121 28 chr6 162192475 162192765 -27086789 - MLT1H LTR MaLR -4 545 229 2296 74 7 7 chr6 162193122 162193431 -27086123 - AluY SINE Alu -2 309 1 41 48 0 0 chr6 162193481 162193543 -27086011 + AT_rich Low_complexity Low_complexity 1 62 0 29 0 0 0 chr6 162193799 162193828 -27085726 + AT_rich Low_complexity Low_complexity 1 29 0 251 314 70 46 chr6 162195004 162195114 -27084440 - MIR SINE MIR -88 120 6 222 262 16 0 chr6 162195631 162195692 -27083862 + (TA)n Simple_repeat Simple_repeat 1 62 0 248 204 20 0 chr6 162195791 162195840 -27083714 + MER112 DNA MER1_type 210 259 -1 32 86 0 0 chr6 162195891 162195972 -27083582 + AT_rich Low_complexity Low_complexity 1 81 0 22 56 0 0 chr6 162196882 162196918 -27082636 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr6 162197056 162197085 -27082469 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 162197503 162197532 -27082022 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr6 162197571 162197614 -27081940 + AT_rich Low_complexity Low_complexity 1 43 0 670 177 20 68 chr6 162198041 162198188 -27081366 - FLAM_C SINE Alu -1 142 3 208 421 53 0 chr6 162198365 162198498 -27081056 + L2 LINE L2 2914 3053 -219 33 25 0 0 chr6 162198766 162198806 -27080748 + AT_rich Low_complexity Low_complexity 1 40 0 378 340 68 10 chr6 162199015 162199256 -27080298 - MIR SINE MIR -3 259 12 21 0 0 0 chr6 162199468 162199489 -27080065 + AT_rich Low_complexity Low_complexity 1 21 0 375 342 141 7 chr6 162199576 162199725 -27079829 - MIR3 SINE MIR -14 194 26 261 324 0 0 chr6 162200097 162200171 -27079383 - L2 LINE L2 -6 3307 3234 220 314 69 74 chr6 162200190 162200365 -27079189 - L2 LINE L2 -189 3083 2910 759 339 133 29 chr6 162200635 162201461 -27078093 - L2 LINE L2 -182 3090 2194 1331 227 62 78 chr6 162202225 162202903 -27076651 - L1MC5 LINE L1 -419 7542 6876 5283 278 80 28 chr6 162203434 162204815 -27074739 + L1MEc LINE L1 56 1604 -4792 2279 77 13 3 chr6 162204815 162205114 -27074440 + AluY SINE Alu 1 302 -9 5283 278 80 28 chr6 162205114 162206033 -27073521 + L1MEc LINE L1 1604 2474 -3922 2647 254 92 18 chr6 162206029 162207031 -27072523 + L1MEc LINE L1 2722 3797 -2418 * 1356 187 3 76 chr6 162207768 162208083 -27071471 + AluJo SINE Alu 1 292 -20 2307 64 7 3 chr6 162208381 162208676 -27070878 + AluY SINE Alu 2 297 -14 225 0 0 0 chr6 162208959 162208984 -27070570 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 281 170 0 0 chr6 162208984 162209031 -27070523 - AluSq SINE Alu -15 285 239 32 26 0 0 chr6 162209551 162209590 -27069964 + AT_rich Low_complexity Low_complexity 1 39 0 2423 68 3 3 chr6 162210257 162210564 -27068990 - AluY SINE Alu -4 307 1 27 0 0 0 chr6 162211116 162211143 -27068411 + AT_rich Low_complexity Low_complexity 1 27 0 273 158 0 70 chr6 162211493 162211550 -27068004 + Tigger5 DNA MER2_type 1 53 -2270 248 206 127 16 chr6 162211518 162211581 -27067973 + Tigger5 DNA MER2_type 2249 2318 -5 * 465 239 0 0 chr6 162211602 162211690 -27067864 - Tigger5 DNA MER2_type -2235 88 1 546 184 0 0 chr6 162211701 162211788 -27067766 + Tigger5 DNA MER2_type 2237 2323 0 2764 216 22 2 chr6 162213336 162213886 -27065668 - MER68 LTR ERV1 -1 561 1 24 0 0 0 chr6 162213911 162213935 -27065619 + AT_rich Low_complexity Low_complexity 1 24 0 253 312 9 18 chr6 162214704 162214813 -27064741 - L1MC4 LINE L1 -140 7902 7795 1298 236 31 78 chr6 162214843 162215355 -27064199 - L1MC4 LINE L1 -391 7651 7164 23 0 0 0 chr6 162215477 162215500 -27064054 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 162215651 162215673 -27063881 + AT_rich Low_complexity Low_complexity 1 22 0 2013 89 0 4 chr6 162215808 162216066 -27063488 - AluSq SINE Alu -56 257 1 454 315 12 37 chr6 162216535 162216697 -27062857 + MIR SINE MIR 28 185 -77 253 222 32 0 chr6 162216699 162216762 -27062792 - L2 LINE L2 0 3313 3249 242 302 135 40 chr6 162217094 162217220 -27062334 + MIR3 SINE MIR 33 170 -38 1213 130 82 0 chr6 162217614 162217798 -27061756 + MER30 DNA MER1_type 32 230 0 1171 168 90 4 chr6 162218636 162218892 -27060662 - MER33 DNA MER1_type 0 324 47 197 370 259 0 chr6 162219084 162219219 -27060335 - L2 LINE L2 -1 3271 3102 254 361 158 24 chr6 162219358 162219768 -27059786 - L2 LINE L2 -342 2972 2508 379 259 111 69 chr6 162220207 162220469 -27059085 + HAL1b LINE L1 275 547 -801 24 0 0 0 chr6 162221083 162221107 -27058447 + AT_rich Low_complexity Low_complexity 1 24 0 302 203 40 3 chr6 162221164 162221248 -27058306 + L1MA10 LINE L1 6083 6326 -5 1003 95 0 0 chr6 162221729 162221866 -27057688 - L1MA1 LINE L1 -4 6298 6162 486 34 0 114 chr6 162221867 162221903 -27057651 + L1MA1 LINE L1 6093 6131 -171 2791 7 0 0 chr6 162221903 162222210 -27057344 - AluYa5 SINE Alu -4 307 1 486 34 0 114 chr6 162222210 162222261 -27057293 + L1MA1 LINE L1 6131 6170 -132 351 337 50 36 chr6 162222317 162222666 -27056888 - L1ME LINE L1 -336 5826 5467 * 624 280 141 70 chr6 162222655 162223323 -27056231 - L1M4 LINE L1 -5800 742 28 1998 219 150 20 chr6 162223325 162223964 -27055590 - MER50 LTR ERV1 0 734 13 287 235 113 26 chr6 162224418 162224533 -27055021 + L1ME4a LINE L1 5446 5570 -551 370 236 27 116 chr6 162224551 162224627 -27054927 - L2 LINE L2 -33 3280 3199 1594 176 7 33 chr6 162224627 162224934 -27054620 + AluJb SINE Alu 1 299 -13 370 236 27 116 chr6 162224934 162225082 -27054472 - L2 LINE L2 -114 3199 3076 289 194 140 11 chr6 162225136 162225229 -27054325 + L1ME4a LINE L1 5993 6097 -24 975 181 39 0 chr6 162226618 162226800 -27052754 + MER5A DNA MER1_type 1 189 0 431 247 95 25 chr6 162227067 162227225 -27052329 + MIR SINE MIR 82 250 -12 1811 186 49 6 chr6 162227647 162227975 -27051579 + MER7A DNA MER2_type 1 340 -6 783 278 78 0 chr6 162228931 162229136 -27050418 + MIR SINE MIR 2 222 -40 675 270 66 0 chr6 162229428 162229639 -27049915 - MER112 DNA MER1_type -35 225 1 616 236 144 36 chr6 162229661 162229856 -27049698 + MIR SINE MIR 32 247 -15 1986 249 57 40 chr6 162230115 162230815 -27048739 + L1M2 LINE L1 179 1084 -6125 * 5709 216 51 54 chr6 162230812 162234477 -27045077 + L1M2 LINE L1 1553 4879 -2329 5836 172 35 14 chr6 162234483 162236062 -27043492 + L1M2 LINE L1 5152 6761 -601 1611 147 4 12 chr6 162237244 162237503 -27042051 + AluSg SINE Alu 1 257 -53 2471 113 36 0 chr6 162237872 162238234 -27041320 + THE1C LTR MaLR 1 375 0 6903 153 39 48 chr6 162238234 162239637 -27039917 + THE1C-int LTR MaLR 1 1390 -190 251 269 139 0 chr6 162239790 162239898 -27039656 + MER5C DNA MER1_type 2 124 -200 201 272 130 0 chr6 162239926 162240018 -27039536 + MER5C DNA MER1_type 221 324 0 257 364 8 38 chr6 162241059 162241191 -27038363 - L2 LINE L2 -182 3090 2963 258 270 112 74 chr6 162241295 162241591 -27037963 + L2 LINE L2 2804 3110 -162 798 230 70 19 chr6 162243166 162243379 -27036175 - L2 LINE L2 0 3313 3090 226 194 41 51 chr6 162243467 162243565 -27035989 - Charlie7 DNA MER1_type -2460 152 56 518 282 19 26 chr6 162243680 162243836 -27035718 - MIR SINE MIR -96 166 12 541 247 62 0 chr6 162244314 162244460 -27035094 - MER105 DNA DNA -49 155 1 1855 174 73 53 chr6 162245192 162245241 -27034313 - MLT2C2 LTR ERVL 0 464 417 336 24 0 0 chr6 162245241 162245282 -27034272 + (ATTG)n Simple_repeat Simple_repeat 2 42 0 1855 174 73 53 chr6 162245282 162245685 -27033869 - MLT2C2 LTR ERVL -47 417 3 236 289 87 19 chr6 162246303 162246407 -27033147 + L2 LINE L2 2198 2308 -1006 231 256 26 0 chr6 162246411 162246489 -27033065 - MER116 DNA Mariner 0 80 1 789 212 63 26 chr6 162247195 162247384 -27032170 + MER20 DNA MER1_type 24 219 0 343 284 162 14 chr6 162248243 162248391 -27031163 + MIR SINE MIR 66 235 -27 24 53 0 0 chr6 162248458 162248496 -27031058 + AT_rich Low_complexity Low_complexity 1 38 0 270 0 0 0 chr6 162248897 162248927 -27030627 + (CA)n Simple_repeat Simple_repeat 2 31 0 929 223 58 5 chr6 162252128 162252334 -27027220 + MER20 DNA MER1_type 3 219 0 316 300 69 8 chr6 162253654 162253784 -27025770 - L1MC4a LINE L1 -905 6903 6766 21 36 0 0 chr6 162253959 162253987 -27025567 + AT_rich Low_complexity Low_complexity 1 28 0 1834 142 23 13 chr6 162254541 162254850 -27024704 - AluJb SINE Alu 0 312 1 414 0 0 0 chr6 162255267 162255313 -27024241 + (TG)n Simple_repeat Simple_repeat 2 47 0 1010 194 89 32 chr6 162256067 162256315 -27023239 + AluJo SINE Alu 44 305 -7 182 184 105 0 chr6 162257854 162257892 -27021662 - L2 LINE L2 -4 3309 3268 2163 106 0 3 chr6 162258108 162258410 -27021144 - AluSx SINE Alu -11 301 1 255 297 10 10 chr6 162258996 162259097 -27020457 - AluSp/q SINE Alu 0 303 203 2366 88 10 0 chr6 162259730 162260035 -27019519 - AluSq SINE Alu -5 308 1 279 315 0 11 chr6 162260112 162260204 -27019350 + CT-rich Low_complexity Low_complexity 1 91 0 1109 224 114 10 chr6 162261298 162261588 -27017966 - MER2 DNA MER2_type -25 320 1 374 327 121 12 chr6 162261764 162262012 -27017542 + MER102b DNA MER1_type 25 299 -42 1720 169 28 3 chr6 162262917 162263207 -27016347 - AluJb SINE Alu -15 297 1 22 35 0 0 chr6 162263294 162263323 -27016231 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 162264661 162264686 -27014868 + AT_rich Low_complexity Low_complexity 1 25 0 206 117 17 67 chr6 162264686 162264746 -27014808 + T-rich Low_complexity Low_complexity 4 60 0 31 44 0 0 chr6 162264854 162264899 -27014655 + AT_rich Low_complexity Low_complexity 1 45 0 27 29 0 0 chr6 162264932 162264966 -27014588 + AT_rich Low_complexity Low_complexity 1 34 0 2607 29 0 7 chr6 162265083 162265392 -27014162 - AluY SINE Alu -4 307 1 561 337 51 69 chr6 162266037 162266291 -27013263 + L3 LINE CR1 279 536 -1041 821 257 57 5 chr6 162266291 162266501 -27013053 + MER58A DNA MER1_type 1 221 -3 561 337 51 69 chr6 162266501 162266852 -27012702 + L3 LINE CR1 536 873 -704 355 308 115 0 chr6 162266891 162267021 -27012533 + MIR SINE MIR 48 192 -70 196 316 18 0 chr6 162267090 162267147 -27012407 + L3 LINE CR1 921 978 -599 198 0 0 0 chr6 162267271 162267293 -27012261 + (A)n Simple_repeat Simple_repeat 1 22 0 618 183 80 0 chr6 162267369 162267509 -27012045 + MIR SINE MIR 104 257 -5 208 345 0 64 chr6 162267535 162267645 -27011909 + L3 LINE CR1 1449 1551 -26 675 246 103 87 chr6 162267655 162268216 -27011338 - L2 LINE L2 0 3313 2732 2062 120 0 7 chr6 162268704 162269005 -27010549 + AluSx SINE Alu 1 299 -13 1295 57 11 6 chr6 162271110 162271287 -27008267 + AluY SINE Alu 128 305 -6 21 0 0 0 chr6 162271725 162271746 -27007808 + AT_rich Low_complexity Low_complexity 1 21 0 240 86 0 0 chr6 162272645 162272680 -27006874 + (CA)n Simple_repeat Simple_repeat 2 36 0 263 353 75 23 chr6 162273600 162273733 -27005821 - L2 LINE L2 -1 3271 3132 222 146 21 0 chr6 162277119 162277167 -27002387 + (TG)n Simple_repeat Simple_repeat 1 49 0 646 259 86 9 chr6 162277309 162277529 -27002025 - MIR SINE MIR -25 237 1 23 0 0 0 chr6 162278192 162278215 -27001339 + AT_rich Low_complexity Low_complexity 1 23 0 466 326 98 37 chr6 162278250 162278578 -27000976 + L3 LINE CR1 457 804 -773 189 299 13 39 chr6 162278575 162278652 -27000902 - MIR SINE MIR 0 262 188 * 375 326 124 6 chr6 162278878 162279042 -27000512 - MIR3 SINE MIR -44 218 37 26 0 0 0 chr6 162279597 162279623 -26999931 + AT_rich Low_complexity Low_complexity 1 26 0 1600 176 92 41 chr6 162279897 162280266 -26999288 - MLT1B LTR MaLR -2 388 1 2009 107 14 7 chr6 162281921 162282212 -26997342 + AluSx SINE Alu 1 293 -19 387 274 13 20 chr6 162282255 162282408 -26997146 + L1MEc LINE L1 73 224 -6172 424 239 129 6 chr6 162282582 162282745 -26996809 + L1M4 LINE L1 2998 3180 -2966 1474 242 108 14 chr6 162282778 162283270 -26996284 + HAL1b LINE L1 526 1063 -285 370 242 94 0 chr6 162283345 162283494 -26996060 + HAL1b LINE L1 1186 1348 0 182 108 54 0 chr6 162283796 162283833 -26995721 + CT-rich Low_complexity Low_complexity 2 40 0 282 264 113 0 chr6 162284143 162284249 -26995305 + L1ME4a LINE L1 5630 5747 -374 291 193 156 18 chr6 162284270 162284379 -26995175 + L1ME4a LINE L1 5803 5926 -195 767 249 46 43 chr6 162284656 162284961 -26994593 + L1ME2 LINE L1 5849 6154 -10 189 196 0 87 chr6 162285213 162285259 -26994295 + L2 LINE L2 3227 3268 -4 23 54 0 0 chr6 162285660 162285697 -26993857 + AT_rich Low_complexity Low_complexity 1 37 0 632 266 133 18 chr6 162286240 162286466 -26993088 - MIR SINE MIR -3 259 8 536 175 148 17 chr6 162286591 162286749 -26992805 + MER5A DNA MER1_type 4 186 -3 1583 142 94 11 chr6 162287818 162288093 -26991461 + AluSx SINE Alu 1 298 -14 1586 143 82 11 chr6 162288347 162288627 -26990927 + AluJb SINE Alu 1 300 -12 26 64 0 0 chr6 162289179 162289226 -26990328 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr6 162290114 162290143 -26989411 + AT_rich Low_complexity Low_complexity 1 29 0 715 267 112 0 chr6 162291044 162291274 -26988280 + MIR SINE MIR 7 259 -3 344 317 80 106 chr6 162292453 162292904 -26986650 - L2 LINE L2 -9 3263 2825 2257 141 73 27 chr6 162294004 162294415 -26985139 - Tigger2a DNA MER2_type -3 431 2 3598 24 5 0 chr6 162294931 162295354 -26984200 - L1PA3 LINE L1 0 6155 5731 4196 25 0 0 chr6 162295354 162295875 -26983679 + L1PA3 LINE L1 5230 5750 -405 499 222 48 24 chr6 162296563 162296730 -26982824 + L1ME4a LINE L1 5950 6120 -1 665 118 62 75 chr6 162297454 162297615 -26981939 + MER53 DNA DNA 1 159 -30 969 185 50 66 chr6 162298112 162298414 -26981140 - MER33 DNA MER1_type 0 324 28 541 287 96 30 chr6 162300371 162300601 -26978953 + MIR SINE MIR 18 262 0 1302 268 110 18 chr6 162301333 162301825 -26977729 + L1ME1 LINE L1 43 579 -5817 625 282 45 20 chr6 162301842 162302273 -26977281 - MLT1D LTR MaLR -34 471 2 1362 222 130 9 chr6 162302283 162302715 -26976839 + L1ME1 LINE L1 660 1143 -5253 3728 249 100 20 chr6 162302720 162302826 -26976728 + L1ME1 LINE L1 3054 3150 -3065 2410 73 0 0 chr6 162302826 162303127 -26976427 + AluY SINE Alu 1 301 -10 3728 249 100 20 chr6 162303127 162304406 -26975148 + L1ME1 LINE L1 3150 4550 -1665 2660 224 83 7 chr6 162304437 162305708 -26973846 + L1ME1 LINE L1 4686 6059 -176 744 199 19 6 chr6 162305736 162305897 -26973657 + L1MA10 LINE L1 6169 6331 -3 462 304 46 26 chr6 162306942 162307136 -26972418 - MIR SINE MIR -43 219 22 2340 80 20 0 chr6 162307871 162308200 -26971354 - AluSg SINE Alu 0 337 3 1904 127 30 7 chr6 162308558 162308858 -26970696 + AluSx SINE Alu 1 307 -5 436 270 54 106 chr6 162310460 162311276 -26968278 + L1MEd LINE L1 655 1473 -4870 297 263 77 75 chr6 162311831 162312019 -26967535 + L1MEd LINE L1 2143 2275 -3940 1590 175 22 4 chr6 162312019 162312287 -26967267 + AluJo SINE Alu 16 288 -24 297 263 77 75 chr6 162312287 162312450 -26967104 + L1MEd LINE L1 2275 2436 -3779 275 273 60 47 chr6 162312579 162312729 -26966825 + L1MEd LINE L1 2819 2970 -3245 259 278 43 31 chr6 162312740 162312902 -26966652 + L1MEd LINE L1 3040 3203 -3012 1411 172 80 25 chr6 162312934 162313259 -26966295 - MLT1A1 LTR MaLR 0 365 23 784 292 119 17 chr6 162313289 162313885 -26965669 + L1MEd LINE L1 3256 3912 -2303 229 322 92 17 chr6 162313974 162314269 -26965285 + L1MEd LINE L1 4119 4435 -1780 1832 206 76 49 chr6 162314290 162314776 -26964778 - MLT1D LTR MaLR -5 500 2 5061 199 32 20 chr6 162315070 162315638 -26963916 + L1MB7 LINE L1 4096 4656 -1528 336 48 0 0 chr6 162315638 162315680 -26963874 + (CA)n Simple_repeat Simple_repeat 1 42 0 5061 199 32 20 chr6 162315680 162316327 -26963227 + L1MB7 LINE L1 4656 5294 -890 2478 104 14 16 chr6 162316327 162316692 -26962862 - THE1B LTR MaLR 0 364 1 5061 199 32 20 chr6 162316692 162317522 -26962032 + L1MB7 LINE L1 5294 6168 -16 541 312 127 0 chr6 162319604 162319825 -26959729 + MIR SINE MIR 1 249 -13 21 0 0 0 chr6 162322523 162322544 -26957010 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr6 162324266 162324303 -26955251 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr6 162325286 162325324 -26954230 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr6 162325811 162325843 -26953711 + AT_rich Low_complexity Low_complexity 1 32 0 516 270 171 0 chr6 162326208 162326360 -26953194 - MER5A DNA MER1_type -3 186 9 396 0 0 0 chr6 162327487 162327531 -26952023 + (TG)n Simple_repeat Simple_repeat 2 45 0 1642 180 7 23 chr6 162327979 162328279 -26951275 - AluJo SINE Alu -17 295 1 791 177 38 43 chr6 162328422 162328608 -26950946 - MER5A DNA MER1_type 0 189 5 578 183 74 29 chr6 162328662 162328837 -26950717 - MER20B DNA MER1_type -56 727 545 298 285 67 88 chr6 162329478 162329671 -26949883 + MIR SINE MIR 44 232 -30 1960 120 36 60 chr6 162330052 162330436 -26949118 - THE1C LTR MaLR 0 375 1 182 233 93 0 chr6 162330664 162330707 -26948847 + MIR SINE MIR 68 114 -148 25 0 0 0 chr6 162330707 162330732 -26948822 + AT_rich Low_complexity Low_complexity 1 25 0 362 242 258 0 chr6 162330932 162331052 -26948502 + MIR SINE MIR 82 232 -30 276 248 154 20 chr6 162331056 162331205 -26948349 - MER104 DNA Tc2 -4 176 8 182 188 0 0 chr6 162331210 162331242 -26948312 + MIR SINE MIR 231 262 0 304 327 142 0 chr6 162332146 162332259 -26947295 - L2 LINE L2 -5 3308 3180 378 340 88 61 chr6 162332783 162333145 -26946409 + L2 LINE L2 2891 3262 -10 913 279 60 68 chr6 162334262 162334762 -26944792 + L2 LINE L2 2763 3308 -5 284 275 27 81 chr6 162334817 162334966 -26944588 + MIR SINE MIR 72 212 -50 237 321 89 0 chr6 162334997 162335109 -26944445 + MIR3 SINE MIR 86 207 -1 1608 148 55 81 chr6 162335137 162335179 -26944375 - THE1C LTR MaLR 0 375 333 2108 125 0 0 chr6 162335179 162335468 -26944086 + AluSx SINE Alu 1 289 -23 1608 148 55 81 chr6 162335468 162335810 -26943744 - THE1C LTR MaLR -42 333 1 9035 114 75 33 chr6 162335810 162337326 -26942228 - THE1C-int LTR MaLR 0 1580 1 1709 157 33 33 chr6 162337346 162337683 -26941871 - THE1C LTR MaLR -38 337 1 454 114 0 14 chr6 162337683 162337752 -26941802 + MSTA LTR MaLR 361 428 0 10624 173 25 12 chr6 162337753 162340044 -26939510 - L1MA3 LINE L1 -305 6000 3662 186 43 0 0 chr6 162340044 162340067 -26939487 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 10624 173 25 12 chr6 162340067 162341342 -26938212 - L1MA3 LINE L1 -2643 3662 2405 513 259 18 6 chr6 162341324 162341490 -26938064 + L1MCa LINE L1 1352 1519 -4904 * 319 238 12 12 chr6 162341493 162341573 -26937981 + L1MCc LINE L1 2926 3005 -3938 1854 119 3 34 chr6 162341579 162341917 -26937637 + AluSx SINE Alu 1 329 0 2289 89 0 49 chr6 162344675 162344999 -26934555 - AluSc SINE Alu -1 308 1 560 207 93 7 chr6 162346819 162346969 -26932585 + L1MB7 LINE L1 6006 6168 -16 5954 130 43 44 chr6 162346977 162348658 -26930896 + L1MA9 LINE L1 4644 6312 0 599 214 13 7 chr6 162348653 162348807 -26930747 + L1MCa LINE L1 1548 1702 -5239 * 423 263 88 40 chr6 162348815 162348999 -26930555 + L1MCa LINE L1 2349 2548 -4574 2211 115 0 0 chr6 162348999 162349294 -26930260 + AluSx SINE Alu 15 309 -3 423 263 88 40 chr6 162349294 162349337 -26930217 + L1MCa LINE L1 2548 2587 -4535 246 298 12 12 chr6 162349342 162349426 -26930128 + L1MDb LINE L1 12 95 -6314 310 259 75 129 chr6 162350183 162350461 -26929093 + L1MDb LINE L1 800 1039 -5370 1932 152 14 3 chr6 162350461 162350751 -26928803 + AluJo SINE Alu 1 293 -19 310 259 75 129 chr6 162350751 162350993 -26928561 + L1MDb LINE L1 1039 1292 -5117 * 2356 252 20 13 chr6 162350961 162351651 -26927903 + L1MDb LINE L1 2572 3266 -3140 518 250 0 0 chr6 162351642 162351758 -26927796 + L1MDb LINE L1 3876 3991 -2415 * 483 289 13 13 chr6 162352173 162352325 -26927229 - MIR SINE MIR -10 252 101 201 330 37 26 chr6 162354536 162354660 -26924894 - MIR SINE MIR -85 123 3 205 222 22 0 chr6 162354794 162354839 -26924715 - L3b LINE CR1 0 1583 1538 5851 55 12 23 chr6 162354941 162355562 -26923992 + L1PA8 LINE L1 5443 6056 -116 2057 117 39 0 chr6 162355562 162355844 -26923710 + AluSp SINE Alu 1 293 -20 5851 55 12 23 chr6 162355844 162355955 -26923599 + L1PA8 LINE L1 6056 6167 -5 344 297 122 54 chr6 162356017 162356444 -26923110 + L2 LINE L2 18 473 -2841 482 300 124 39 chr6 162356448 162356858 -26922696 + L2 LINE L2 1390 1834 -1480 994 82 0 0 chr6 162356884 162357018 -26922536 + AluY SINE Alu 178 311 0 2285 70 37 0 chr6 162357030 162357330 -26922224 + AluY SINE Alu 1 311 0 434 258 376 0 chr6 162357330 162357609 -26921945 + L2 LINE L2 1879 2262 -1052 700 128 9 0 chr6 162357683 162357792 -26921762 + L1MB5 LINE L1 6057 6166 -8 3704 194 107 54 chr6 162357852 162358876 -26920678 + LTR28 LTR ERV1 1 1702 -53 647 345 76 14 chr6 162359081 162359356 -26920198 + L2 LINE L2 2639 2930 -384 478 311 20 20 chr6 162359357 162359508 -26920046 + L2 LINE L2 3163 3313 0 21 0 0 0 chr6 162359816 162359837 -26919717 + AT_rich Low_complexity Low_complexity 1 21 0 2094 131 10 10 chr6 162359885 162360183 -26919371 + AluSx SINE Alu 1 298 -14 7354 56 26 3 chr6 162360358 162361914 -26917640 - L1PA8 LINE L1 -2 6170 4632 807 186 43 52 chr6 162361927 162362137 -26917417 + L1MB8 LINE L1 5971 6178 0 319 316 36 64 chr6 162362163 162362413 -26917141 + L1MC/D LINE L1 5301 5543 -2265 460 273 7 28 chr6 162362415 162362558 -26916996 + MLT1H1 LTR MaLR 54 193 -362 398 303 18 69 chr6 162362634 162362852 -26916702 + MLT1H1 LTR MaLR 389 595 0 285 192 41 14 chr6 162363249 162363322 -26916232 - HsTC2 DNA Tc2 -1823 75 1 396 0 0 0 chr6 162363469 162363513 -26916041 + (CA)n Simple_repeat Simple_repeat 1 44 0 191 325 24 59 chr6 162364239 162364408 -26915146 + MIR SINE MIR 28 190 -72 2466 83 0 0 chr6 162364485 162364786 -26914768 - AluSg SINE Alu -9 301 1 413 289 92 6 chr6 162364803 162364976 -26914578 + MIR3 SINE MIR 4 191 -17 384 125 0 0 chr6 162364983 162365039 -26914515 - MADE1 DNA Mariner -24 56 1 1671 207 187 7 chr6 162365793 162366192 -26913362 + MLT2B1 LTR ERVL 1 485 -35 186 118 0 0 chr6 162366192 162366226 -26913328 + (TA)n Simple_repeat Simple_repeat 1 34 0 1671 207 187 7 chr6 162366226 162366260 -26913294 + MLT2B1 LTR ERVL 485 512 -8 443 259 24 47 chr6 162366332 162366502 -26913052 - MIR SINE MIR -7 255 90 275 280 89 83 chr6 162366637 162366805 -26912749 - MER5B DNA MER1_type -6 172 4 1163 200 0 5 chr6 162366836 162367026 -26912528 - MER5A DNA MER1_type 0 189 1 2291 89 20 10 chr6 162367841 162368145 -26911409 - AluSp SINE Alu -4 309 3 717 184 0 0 chr6 162369348 162369457 -26910097 - AluSg/x SINE Alu -27 285 177 1426 208 70 47 chr6 162371308 162371692 -26907862 + MSTD LTR MaLR 1 393 -3 212 229 38 38 chr6 162372002 162372107 -26907447 + A-rich Low_complexity Low_complexity 1 105 0 1832 160 0 10 chr6 162372153 162372447 -26907107 + AluSx SINE Alu 1 291 -21 1472 169 88 11 chr6 162372546 162372830 -26906724 - AluSq SINE Alu -7 306 1 1744 106 0 0 chr6 162372852 162373078 -26906476 - AluSq SINE Alu -87 226 1 2029 145 0 0 chr6 162374009 162374305 -26905249 - AluSx SINE Alu -16 296 1 2745 103 19 8 chr6 162375345 162375714 -26903840 - THE1C LTR MaLR -2 373 1 262 269 93 9 chr6 162375857 162375965 -26903589 + L2 LINE L2 100 216 -3098 312 240 27 33 chr6 162376025 162376041 -26903513 + (CA)n Simple_repeat Simple_repeat 2 17 -133 2163 173 14 14 chr6 162376041 162376406 -26903148 - MLT1A1 LTR MaLR 0 365 1 312 240 27 33 chr6 162376406 162376539 -26903015 + (CA)n Simple_repeat Simple_repeat 17 150 0 520 276 72 17 chr6 162376550 162376731 -26902823 + MER112 DNA MER1_type 64 254 -6 693 303 92 18 chr6 162376784 162377121 -26902433 + L2 LINE L2 332 693 -2621 194 361 21 0 chr6 162377623 162377720 -26901834 - MIR SINE MIR -34 228 130 2319 104 0 0 chr6 162378194 162378492 -26901062 - AluSx SINE Alu -14 298 1 1334 216 76 48 chr6 162378578 162378935 -26900619 + MLT1A2 LTR MaLR 6 372 -2 180 351 40 47 chr6 162378936 162379084 -26900470 - MIR3 SINE MIR -15 193 47 2205 115 3 0 chr6 162379195 162379500 -26900054 + AluSq SINE Alu 3 308 -5 4133 201 100 67 chr6 162380813 162380969 -26898585 + L1MC4 LINE L1 6519 6668 -1374 502 103 13 13 chr6 162380969 162381047 -26898507 + MADE1 DNA Mariner 1 78 -2 4133 201 100 67 chr6 162381047 162382299 -26897255 + L1MC4 LINE L1 6668 8035 -7 2798 154 86 57 chr6 162383472 162383618 -26895936 + LTR8A LTR ERV1 1 141 -586 4079 119 55 5 chr6 162383618 162384231 -26895323 + LTR9B LTR ERV1 1 644 0 2798 154 86 57 chr6 162384231 162384738 -26894816 + LTR8A LTR ERV1 141 673 -54 4135 87 6 0 chr6 162384742 162385285 -26894269 - MER41A LTR ERV1 -8 546 1 25 31 0 0 chr6 162385390 162385422 -26894132 + AT_rich Low_complexity Low_complexity 1 32 0 1017 238 93 65 chr6 162385647 162386152 -26893402 + HAL1b LINE L1 89 607 -741 2282 105 0 0 chr6 162386583 162386878 -26892676 + AluSx SINE Alu 8 302 -10 2462 152 16 60 chr6 162386960 162387413 -26892141 - Tigger2a DNA MER2_type 0 434 2 225 0 0 0 chr6 162387540 162387565 -26891989 + (CAA)n Simple_repeat Simple_repeat 2 26 0 261 0 0 0 chr6 162387565 162387594 -26891960 + (CA)n Simple_repeat Simple_repeat 2 30 0 26 30 0 0 chr6 162388328 162388361 -26891193 + AT_rich Low_complexity Low_complexity 1 33 0 1911 164 58 65 chr6 162388385 162388847 -26890707 - LTR2B LTR ERV1 0 490 32 21 0 0 0 chr6 162389398 162389419 -26890135 + AT_rich Low_complexity Low_complexity 1 21 0 2013 165 30 67 chr6 162389436 162389841 -26889713 + MLT1B LTR MaLR 1 390 0 3088 75 0 0 chr6 162390443 162390846 -26888708 + L1PA13 LINE L1 5724 6128 -35 750 289 13 39 chr6 162391180 162391412 -26888142 + MIR SINE MIR 13 238 -24 263 263 25 0 chr6 162392416 162392496 -26887058 + MER94 DNA DNA 1 82 -52 24 32 0 0 chr6 162393231 162393262 -26886292 + AT_rich Low_complexity Low_complexity 1 31 0 485 318 29 12 chr6 162393338 162393508 -26886046 - MIR SINE MIR -56 206 34 387 331 66 24 chr6 162394194 162394360 -26885194 + MER5A DNA MER1_type 17 189 0 233 191 79 32 chr6 162394504 162394567 -26884987 - MIR3 SINE MIR -32 176 111 226 0 33 0 chr6 162395358 162395388 -26884166 + MLT2B2 LTR ERVL 3 33 -482 1174 215 4 48 chr6 162395423 162395693 -26883861 + MLT1A1 LTR MaLR 17 274 -91 9027 87 6 19 chr6 162395701 162397781 -26881773 + L1PA7 LINE L1 4093 6153 -1 232 196 0 0 chr6 162397822 162397868 -26881686 - L1P LINE L1 -1920 4226 4181 189 0 0 0 chr6 162397879 162397900 -26881654 + (CTAG)n Simple_repeat Simple_repeat 3 23 0 536 222 97 0 chr6 162397908 162398052 -26881502 + L1MC1 LINE L1 4717 4874 -1272 276 149 0 0 chr6 162398070 162398117 -26881437 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 405 220 0 44 chr6 162398120 162398211 -26881343 - L1M4 LINE L1 -1994 4152 4066 334 161 0 16 chr6 162398211 162398273 -26881281 - L1MDa LINE L1 -5201 928 868 3913 193 39 46 chr6 162398364 162398771 -26880783 - L1MB8 LINE L1 0 6178 5770 2324 97 0 3 chr6 162398771 162399071 -26880483 - AluSc SINE Alu -10 299 1 3913 193 39 46 chr6 162399071 162400510 -26879044 - L1MB8 LINE L1 -408 5770 4345 6460 143 42 7 chr6 162400635 162401923 -26877631 + L1MC1 LINE L1 4998 6333 0 225 325 63 40 chr6 162402063 162402189 -26877365 - L1MDa LINE L1 -5428 691 563 371 348 139 21 chr6 162402411 162402750 -26876804 - L1MDa LINE L1 -5735 384 6 420 254 24 40 chr6 162402815 162402941 -26876613 + MIR3 SINE MIR 78 201 -7 816 297 153 21 chr6 162404409 162404888 -26874666 - L2 LINE L2 -1280 2034 1465 1790 94 9 0 chr6 162404888 162405121 -26874433 + AluSg SINE Alu 1 235 -75 816 297 153 21 chr6 162405121 162405216 -26874338 - L2 LINE L2 -1849 1465 1384 185 355 21 54 chr6 162405216 162405309 -26874245 - L2 LINE L2 -2846 468 379 487 272 132 62 chr6 162406188 162406230 -26873324 + L1ME4a LINE L1 5318 5356 -765 2492 30 3 33 chr6 162406230 162406535 -26873019 + AluY SINE Alu 1 296 -15 487 272 132 62 chr6 162406535 162406849 -26872705 + L1ME4a LINE L1 5356 5699 -422 408 209 101 7 chr6 162406889 162407028 -26872526 + L1ME4a LINE L1 5955 6106 -15 4125 222 11 23 chr6 162407037 162407754 -26871800 - L1 LINE L1 -3139 3007 2283 2202 131 0 0 chr6 162407754 162408066 -26871488 - AluSq SINE Alu -1 312 1 4125 222 11 23 chr6 162408066 162408165 -26871389 - L1 LINE L1 -3863 2283 2184 207 0 0 0 chr6 162408165 162408188 -26871366 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4125 222 11 23 chr6 162408188 162408604 -26870950 - L1 LINE L1 -3962 2184 1777 * 5861 154 7 16 chr6 162408600 162410431 -26869123 + L1PB2 LINE L1 4333 6150 -1 21 0 0 0 chr6 162411116 162411137 -26868417 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr6 162411234 162411276 -26868278 + AT_rich Low_complexity Low_complexity 1 42 0 299 279 105 42 chr6 162411952 162412142 -26867412 + MIR SINE MIR 20 221 -41 1055 280 79 46 chr6 162412833 162413541 -26866013 - L2 LINE L2 -2 3311 2573 895 242 80 37 chr6 162413767 162414143 -26865411 + L1ME1 LINE L1 4074 4465 -1681 * 1274 248 45 5 chr6 162414141 162414516 -26865038 - L1M4 LINE L1 -1233 4913 4524 1396 148 140 0 chr6 162414516 162414766 -26864788 - MLT2B1 LTR ERVL -234 286 2 2168 120 0 26 chr6 162414766 162415074 -26864480 + AluSx SINE Alu 1 300 -12 2549 210 73 79 chr6 162415087 162415751 -26863803 + L1ME1 LINE L1 5100 5744 -422 6896 53 2 0 chr6 162415751 162417334 -26862220 - L1PA7 LINE L1 0 6154 4557 2549 210 73 79 chr6 162417334 162417748 -26861806 + L1ME1 LINE L1 5744 6159 -7 7790 46 0 0 chr6 162417799 162419541 -26860013 - L1PA5 LINE L1 0 6154 4413 1362 239 3 65 chr6 162419777 162420162 -26859392 - MLT1A2 LTR MaLR -13 361 1 2196 114 0 10 chr6 162420408 162420716 -26858838 + AluSx SINE Alu 6 310 -2 1381 199 124 5 chr6 162421151 162421523 -26858031 - LTR52 LTR ERVL -3 418 3 325 235 96 9 chr6 162421655 162421770 -26857784 - L1ME4a LINE L1 -26 6095 5971 2277 114 0 9 chr6 162421797 162422112 -26857442 + AluSx SINE Alu 1 312 0 26 30 0 0 chr6 162422119 162422152 -26857402 + AT_rich Low_complexity Low_complexity 1 33 0 398 138 0 0 chr6 162423191 162423249 -26856305 + MER58 DNA MER1_type 2363 2420 0 252 0 0 0 chr6 162423462 162423490 -26856064 + (CA)n Simple_repeat Simple_repeat 1 28 0 2309 93 3 3 chr6 162423524 162423835 -26855719 + AluSq SINE Alu 1 311 -2 575 315 46 8 chr6 162424045 162424286 -26855268 - MIR SINE MIR 0 262 13 300 154 0 0 chr6 162424823 162424875 -26854679 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 273 167 24 12 chr6 162424938 162425022 -26854532 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 2046 146 0 3 chr6 162425362 162425670 -26853884 + AluJb SINE Alu 1 307 -5 2180 128 0 0 chr6 162427414 162427710 -26851844 + AluSx SINE Alu 1 296 -16 1277 266 104 19 chr6 162427862 162428392 -26851162 + L2 LINE L2 1080 1654 -1660 1872 272 184 29 chr6 162429032 162430180 -26849374 + L2 LINE L2 1686 3011 -302 387 280 7 80 chr6 162430181 162430331 -26849223 + L2 LINE L2 3159 3297 -16 1277 154 92 103 chr6 162430436 162430457 -26849097 - MLT1A2 LTR MaLR 0 390 370 2456 127 5 16 chr6 162430457 162430836 -26848718 - THE1C LTR MaLR 0 375 1 1277 154 92 103 chr6 162430836 162430857 -26848697 - MLT1A2 LTR MaLR -20 370 350 189 0 0 0 chr6 162430857 162430878 -26848676 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1277 154 92 103 chr6 162430878 162431226 -26848328 - MLT1A2 LTR MaLR -40 350 1 1449 201 64 97 chr6 162431430 162432175 -26847379 - L1MC5 LINE L1 -42 7919 7199 5262 227 53 13 chr6 162432175 162433574 -26845980 - Charlie1a DNA MER1_type 0 1455 1 1455 247 70 85 chr6 162433578 162434462 -26845092 - L1MC5 LINE L1 -759 7202 6307 1928 160 29 29 chr6 162434462 162434837 -26844717 - THE1C LTR MaLR 0 375 1 1455 247 70 85 chr6 162434837 162435105 -26844449 - L1MC5 LINE L1 -1654 6307 6036 260 232 0 0 chr6 162435163 162435219 -26844335 - L1MC5 LINE L1 -1874 5934 5879 2256 173 21 23 chr6 162435228 162435655 -26843899 - Tigger2a DNA MER2_type -8 426 1 1177 255 10 23 chr6 162435660 162435970 -26843584 - L1MC5 LINE L1 -1941 5867 5562 818 271 142 52 chr6 162435973 162436028 -26843526 + LTR50 LTR ERVL 1 50 -745 1641 208 46 32 chr6 162436028 162436465 -26843089 - LTR47B LTR ERVL 0 443 1 818 271 142 52 chr6 162436465 162436967 -26842587 + LTR50 LTR ERVL 50 608 -187 287 146 0 0 chr6 162436977 162437025 -26842529 + MADE1 DNA Mariner 33 80 0 501 265 107 58 chr6 162437146 162437286 -26842268 - L1MC5 LINE L1 -2241 5567 5435 1671 144 22 7 chr6 162437286 162437557 -26841997 - AluJo SINE Alu -4 308 34 501 265 107 58 chr6 162437557 162437707 -26841847 - L1MC5 LINE L1 -2373 5435 5263 232 226 0 19 chr6 162440337 162440390 -26839164 + L2 LINE L2 3262 3313 0 558 281 64 0 chr6 162440445 162440616 -26838938 + MIR3 SINE MIR 21 202 -6 302 320 29 0 chr6 162441071 162441174 -26838380 + MIR SINE MIR 59 164 -98 2382 94 7 0 chr6 162441325 162441634 -26837920 + AluSx SINE Alu 1 311 -1 291 54 0 0 chr6 162441641 162441678 -26837876 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 322 264 246 12 chr6 162441873 162442040 -26837514 + MIR SINE MIR 47 252 -10 24 0 0 0 chr6 162442306 162442330 -26837224 + GC_rich Low_complexity Low_complexity 1 24 0 40 79 0 0 chr6 162444647 162444736 -26834818 + GC_rich Low_complexity Low_complexity 1 89 0 26 0 0 0 chr6 162444885 162444911 -26834643 + GC_rich Low_complexity Low_complexity 1 26 0 2135 100 10 10 chr6 162447438 162447738 -26831816 - AluSx SINE Alu -12 300 1 182 263 18 35 chr6 162448148 162448205 -26831349 + MIR SINE MIR 101 156 -106 556 314 52 75 chr6 162448207 162448649 -26830905 - L2 LINE L2 -20 3252 2821 216 0 0 0 chr6 162450664 162450688 -26828866 + (T)n Simple_repeat Simple_repeat 1 24 0 969 163 0 0 chr6 162450842 162451108 -26828446 + (TCCA)n Simple_repeat Simple_repeat 1 446 0 243 247 169 34 chr6 162451108 162451197 -26828357 - L2 LINE L2 0 3272 3172 456 198 0 31 chr6 162451470 162451566 -26827988 + MER96B DNA MER1_type? 1 93 -82 440 294 203 5 chr6 162451826 162452013 -26827541 + MIR SINE MIR 1 224 -38 663 162 18 0 chr6 162452017 162452128 -26827426 - MLT1C LTR MaLR -7 460 348 3949 192 42 6 chr6 162452128 162452837 -26826717 - ERVL LTR ERVL -2468 3296 2562 501 311 78 31 chr6 162453034 162453391 -26826163 - MARNA DNA Mariner -28 558 185 1659 202 147 15 chr6 162454717 162455471 -26824083 - MER97a DNA MER1_type? -1 893 7 227 276 69 23 chr6 162455487 162455574 -26823980 + MIR SINE MIR 122 212 -50 2062 99 31 14 chr6 162455600 162455893 -26823661 - AluSx SINE Alu -12 300 3 1737 149 55 3 chr6 162456200 162456509 -26823045 - L1MA9 LINE L1 0 6312 5988 23 0 0 0 chr6 162456610 162456633 -26822921 + AT_rich Low_complexity Low_complexity 1 23 0 492 276 62 0 chr6 162457038 162457183 -26822371 + MIR SINE MIR 90 243 -19 423 307 25 56 chr6 162457620 162457939 -26821615 - L1M4 LINE L1 -1944 4202 3894 252 77 0 0 chr6 162459878 162459917 -26819637 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 587 280 60 30 chr6 162460329 162460529 -26819025 - MIR SINE MIR -51 211 6 341 231 90 30 chr6 162461764 162461898 -26817656 - L2 LINE L2 -7 3306 3165 2562 139 49 7 chr6 162462642 162463053 -26816501 - MSTA LTR MaLR 0 428 1 1268 90 37 11 chr6 162463057 162463246 -26816308 - MSTA-int LTR MaLR -4 1647 1454 2224 144 55 0 chr6 162463302 162463664 -26815890 - MSTA LTR MaLR -46 382 1 2292 140 57 13 chr6 162463715 162464087 -26815467 - MLT1B LTR MaLR 0 390 3 606 329 9 14 chr6 162464403 162464613 -26814941 + MIR SINE MIR 40 248 -14 22 0 0 0 chr6 162464761 162464783 -26814771 + AT_rich Low_complexity Low_complexity 1 22 0 253 250 70 30 chr6 162466937 162467037 -26812517 + L2 LINE L2 3166 3269 -3 970 201 36 18 chr6 162467058 162467277 -26812277 - MER63 DNA MER1_type -744 317 95 21 0 0 0 chr6 162467288 162467309 -26812245 + AT_rich Low_complexity Low_complexity 1 21 0 271 187 53 13 chr6 162467539 162467614 -26811940 + L2 LINE L2 3221 3298 -15 4987 75 21 14 chr6 162467625 162468277 -26811277 - L1PB2 LINE L1 -2 6149 5493 425 158 0 114 chr6 162468277 162468391 -26811163 - MER63 DNA MER1_type -953 108 8 321 200 156 0 chr6 162468648 162468738 -26810816 - MER69 DNA AcHobo -2 2524 2421 1342 96 0 0 chr6 162468798 162468975 -26810579 + AluSp SINE Alu 137 313 0 1739 155 13 36 chr6 162469191 162469500 -26810054 - MLT2D LTR ERVL -110 304 3 5625 66 22 4 chr6 162469879 162470558 -26808996 - LTR8 LTR ERV1 0 691 1 45300 84 17 30 chr6 162470558 162471470 -26808084 - HUERS-P1 LTR ERV1 0 6263 5341 2315 95 0 0 chr6 162471470 162471765 -26807789 - AluY SINE Alu -16 295 1 45300 84 17 30 chr6 162471765 162472953 -26806601 - HUERS-P1 LTR ERV1 -922 5341 4139 2394 39 7 20 chr6 162472953 162473259 -26806295 + AluY SINE Alu 1 302 -9 45300 84 17 30 chr6 162473259 162476416 -26803138 - HUERS-P1 LTR ERV1 -2124 4139 1098 2249 104 0 22 chr6 162476416 162476732 -26802822 - AluSx SINE Alu -3 309 1 45300 84 17 30 chr6 162476732 162477817 -26801737 - HUERS-P1 LTR ERV1 -5165 1098 1 5726 84 1 0 chr6 162477817 162478507 -26801047 - LTR8 LTR ERV1 0 691 1 299 342 8 0 chr6 162481143 162481263 -26798291 + (TA)n Simple_repeat Simple_repeat 1 121 0 777 231 147 76 chr6 162481474 162481730 -26797824 - MLT1J2 LTR MaLR -1 414 168 2401 84 0 0 chr6 162481730 162482026 -26797528 + AluSp SINE Alu 1 296 -17 777 231 147 76 chr6 162482026 162482187 -26797367 - MLT1J2 LTR MaLR -247 168 20 2202 199 100 35 chr6 162482665 162483274 -26796280 - MLT1E2 LTR MaLR 0 626 10 259 244 75 125 chr6 162483955 162484115 -26795439 + MIR3 SINE MIR 29 180 -28 1005 251 126 11 chr6 162484400 162484671 -26794883 + MLT1I LTR MaLR 106 407 -2 385 343 78 39 chr6 162484895 162485204 -26794350 + LTR16C LTR ERVL 158 478 -13 4349 126 24 8 chr6 162485420 162485445 -26794109 + L1PB4 LINE L1 5466 5489 -667 1515 167 27 33 chr6 162485445 162485745 -26793809 + AluJo SINE Alu 1 298 -14 4349 126 24 8 chr6 162485745 162486387 -26793167 + L1PB4 LINE L1 5489 6144 -12 255 305 74 11 chr6 162486737 162486832 -26792722 - MIR3 SINE MIR -1 207 107 329 62 21 0 chr6 162487284 162487332 -26792222 + (TA)n Simple_repeat Simple_repeat 2 50 0 25 31 0 0 chr6 162487338 162487370 -26792184 + AT_rich Low_complexity Low_complexity 1 32 0 808 260 25 37 chr6 162488555 162488797 -26790757 - MIR SINE MIR -3 259 21 2460 141 13 13 chr6 162489442 162489817 -26789737 - THE1C LTR MaLR 0 375 1 5680 183 73 42 chr6 162490340 162491580 -26787974 + Charlie1a DNA MER1_type 1 1290 -1471 2499 61 0 0 chr6 162491580 162491874 -26787680 - AluY SINE Alu -17 294 1 5680 183 73 42 chr6 162491874 162492029 -26787525 + Charlie1a DNA MER1_type 1290 1439 -16 1358 198 85 44 chr6 162492807 162493242 -26786312 - MLT1C LTR MaLR -7 460 8 358 262 50 89 chr6 162493318 162493520 -26786034 + MIR SINE MIR 61 254 -8 181 316 109 57 chr6 162494147 162494394 -26785160 + L2 LINE L2 1419 1678 -1636 2097 79 18 14 chr6 162496669 162496972 -26782582 - AluSc SINE Alu 0 304 1 2638 46 0 0 chr6 162498023 162498330 -26781224 + AluY SINE Alu 1 307 -4 186 103 0 0 chr6 162498879 162498908 -26780646 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1204 253 22 55 chr6 162499826 162500193 -26779361 + L3 LINE CR1 1 355 -1222 2019 139 3 7 chr6 162500947 162501242 -26778312 - AluSx SINE Alu -18 294 1 295 312 52 52 chr6 162502964 162503118 -26776436 + MIR SINE MIR 88 241 -21 250 125 83 0 chr6 162503293 162503341 -26776213 + L2 LINE L2 3220 3271 -1 243 0 0 0 chr6 162503402 162503429 -26776125 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 2245 98 29 10 chr6 162504427 162504733 -26774821 + AluSx SINE Alu 1 312 0 248 305 12 24 chr6 162505952 162506034 -26773520 + MIR SINE MIR 40 120 -142 339 291 24 31 chr6 162506254 162506381 -26773173 - MIR3 SINE MIR -16 192 67 267 214 36 60 chr6 162507527 162507611 -26771943 + L2 LINE L2 3190 3271 -1 24 32 0 0 chr6 162507864 162507895 -26771659 + AT_rich Low_complexity Low_complexity 1 31 0 721 164 0 0 chr6 162507975 162508085 -26771469 - FRAM SINE Alu -29 147 38 353 272 57 57 chr6 162508622 162508679 -26770875 + MIR SINE MIR 28 84 -178 2026 133 37 37 chr6 162508679 162509054 -26770500 - THE1C LTR MaLR 0 375 1 353 272 57 57 chr6 162509054 162509154 -26770400 + MIR SINE MIR 83 185 -77 2331 82 0 13 chr6 162509326 162509629 -26769925 + AluY SINE Alu 2 300 -11 638 259 139 15 chr6 162509697 162509898 -26769656 - MIR SINE MIR -26 236 11 1258 192 92 46 chr6 162510034 162510383 -26769171 - MLT1A1 LTR MaLR 0 365 1 1223 247 118 29 chr6 162510399 162511079 -26768475 - HsTC2a DNA MER2_type 0 744 5 37 0 0 0 chr6 162511403 162511440 -26768114 + AT_rich Low_complexity Low_complexity 1 37 0 2253 101 7 3 chr6 162511625 162511921 -26767633 - AluSx SINE Alu -15 297 1 394 226 32 11 chr6 162512119 162512212 -26767342 - MIR SINE MIR -71 191 97 265 156 16 16 chr6 162512936 162513000 -26766554 + CT-rich Low_complexity Low_complexity 3 66 0 266 267 158 10 chr6 162514314 162514415 -26765139 + MIR SINE MIR 8 123 -139 2026 133 31 0 chr6 162514937 162515230 -26764324 - AluSx SINE Alu -1 311 10 325 300 118 9 chr6 162515342 162515452 -26764102 - L2 LINE L2 -5 3308 3187 754 195 67 26 chr6 162515976 162516171 -26763383 + MER3 DNA MER1_type 2 204 -5 609 299 145 46 chr6 162516624 162517502 -26762052 - L2 LINE L2 -805 2509 1545 1838 96 0 36 chr6 162517559 162517810 -26761744 + AluSx SINE Alu 1 242 -70 225 0 0 0 chr6 162519301 162519326 -26760228 + (CA)n Simple_repeat Simple_repeat 2 26 0 267 248 26 43 chr6 162519520 162519637 -26759917 + L1ME4a LINE L1 5944 6058 -63 21 0 0 0 chr6 162519675 162519696 -26759858 + AT_rich Low_complexity Low_complexity 1 21 0 38 51 0 0 chr6 162522142 162522201 -26757353 + AT_rich Low_complexity Low_complexity 1 59 0 317 289 99 28 chr6 162522562 162522704 -26756850 + L2 LINE L2 3156 3307 -6 1937 170 3 0 chr6 162522708 162523019 -26756535 - AluSx SINE Alu 0 312 1 2210 99 0 38 chr6 162523795 162524108 -26755446 - AluSx SINE Alu -11 301 1 271 149 85 128 chr6 162524412 162524438 -26755116 - MER94 DNA DNA -35 99 73 1750 151 11 14 chr6 162524438 162524737 -26754817 - AluJo SINE Alu 0 302 5 271 149 85 128 chr6 162524737 162524803 -26754751 - MER94 DNA DNA -61 73 10 528 256 69 19 chr6 162524927 162525087 -26754467 + MIR SINE MIR 2 169 -93 224 260 42 62 chr6 162525161 162525257 -26754297 + MIR SINE MIR 167 260 -2 240 289 72 12 chr6 162525806 162525889 -26753665 + L2 LINE L2 3164 3251 -21 2076 141 7 0 chr6 162525895 162526193 -26753361 - AluSx SINE Alu -12 300 1 206 298 66 25 chr6 162526780 162526901 -26752653 + L2 LINE L2 3145 3270 -2 963 150 12 19 chr6 162527562 162527722 -26751832 - AluJo SINE Alu -104 208 50 335 364 43 0 chr6 162528156 162528296 -26751258 + MIR SINE MIR 92 237 -25 207 239 22 0 chr6 162528410 162528456 -26751098 - MIR3 SINE MIR -11 197 151 302 301 87 63 chr6 162528652 162528938 -26750616 - L2 LINE L2 0 3313 3021 2276 90 3 3 chr6 162529329 162529628 -26749926 + AluSx SINE Alu 1 299 -13 195 287 254 0 chr6 162530721 162530902 -26748652 - MIR SINE MIR 0 262 36 2314 103 0 3 chr6 162531005 162531307 -26748247 - AluSc SINE Alu -8 301 1 192 383 0 0 chr6 162531330 162531390 -26748164 + MIR SINE MIR 92 151 -111 1770 173 3 40 chr6 162533582 162533905 -26745649 - AluJb SINE Alu 0 312 2 30 27 0 0 chr6 162534971 162535008 -26744546 + AT_rich Low_complexity Low_complexity 1 37 0 2204 105 0 0 chr6 162537945 162538272 -26741282 + AluSx SINE Alu 1 327 0 21 0 0 0 chr6 162538893 162538914 -26740640 + AT_rich Low_complexity Low_complexity 1 21 0 220 318 16 16 chr6 162539108 162539171 -26740383 - MIR SINE MIR -111 97 35 193 28 0 56 chr6 162539262 162539298 -26740256 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr6 162540364 162540385 -26739169 + AT_rich Low_complexity Low_complexity 1 21 0 1658 192 20 13 chr6 162540596 162540898 -26738656 - AluJo SINE Alu -8 304 1 291 310 211 16 chr6 162541472 162541714 -26737840 + L3 LINE CR1 1238 1526 -51 29 28 0 0 chr6 162542009 162542045 -26737509 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr6 162542174 162542208 -26737346 + AT_rich Low_complexity Low_complexity 1 34 0 427 216 192 30 chr6 162542208 162542375 -26737179 - MIR SINE MIR -58 204 11 207 0 0 0 chr6 162542447 162542470 -26737084 + (A)n Simple_repeat Simple_repeat 1 23 0 244 226 19 0 chr6 162542553 162542606 -26736948 - MER5B DNA MER1_type 0 178 125 6964 122 26 11 chr6 162542666 162544449 -26735105 + L1MA1 LINE L1 4479 6298 -4 33 0 0 0 chr6 162544449 162544482 -26735072 + AT_rich Low_complexity Low_complexity 1 33 0 1711 160 32 85 chr6 162544571 162544983 -26734571 + MLT1B LTR MaLR 1 390 0 2208 84 0 36 chr6 162545044 162545352 -26734202 - AluSg SINE Alu -13 297 1 2273 102 0 16 chr6 162546368 162546671 -26732883 - AluSx SINE Alu -14 298 1 1482 94 5 9 chr6 162546679 162546902 -26732652 - L1PA13 LINE L1 0 6163 5942 2105 100 0 4 chr6 162548243 162548550 -26731004 + AluSg SINE Alu 2 307 0 25 0 0 0 chr6 162548879 162548904 -26730650 + AT_rich Low_complexity Low_complexity 1 25 0 1761 156 123 28 chr6 162549269 162549660 -26729894 - MSTA LTR MaLR 0 428 1 264 229 135 21 chr6 162551178 162551274 -26728280 + MIR SINE MIR 36 142 -120 232 185 37 37 chr6 162551243 162551297 -26728257 + MIR3 SINE MIR 111 164 -44 * 192 97 0 0 chr6 162551730 162551761 -26727793 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2094 186 0 3 chr6 162552251 162552617 -26726937 + MLT1A1 LTR MaLR 1 365 0 188 167 0 19 chr6 162552664 162552718 -26726836 + CT-rich Low_complexity Low_complexity 1 53 0 707 232 27 5 chr6 162552965 162553150 -26726404 - L1MEc LINE L1 -6173 223 35 617 212 103 0 chr6 162554090 162554255 -26725299 - Charlie1 DNA MER1_type -1 2760 2579 180 200 0 0 chr6 162554302 162554342 -26725212 + CT-rich Low_complexity Low_complexity 3 42 0 731 266 80 0 chr6 162554421 162554647 -26724907 - Charlie1a DNA MER1_type -1210 245 2 21 57 0 0 chr6 162554666 162554701 -26724853 + AT_rich Low_complexity Low_complexity 1 35 0 1805 258 61 36 chr6 162554732 162555489 -26724065 - L1ME3A LINE L1 -9 6579 5804 4614 182 25 27 chr6 162555496 162555958 -26723596 - Tigger6a DNA MER2_type -514 1083 622 1957 125 84 0 chr6 162555958 162556245 -26723309 - AluSx SINE Alu -1 311 1 4614 182 25 27 chr6 162556245 162556796 -26722758 - Tigger6a DNA MER2_type -975 622 72 946 304 68 15 chr6 162556840 162557498 -26722056 - L1ME3A LINE L1 -763 5801 5109 498 69 0 0 chr6 162557655 162557727 -26721827 - L1PA7 LINE L1 0 6154 6083 265 234 31 39 chr6 162557740 162557868 -26721686 - L1ME3A LINE L1 -1471 5093 4967 216 97 0 0 chr6 162558003 162558034 -26721520 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 1597 167 42 8 chr6 162558046 162558309 -26721245 - AluJb SINE Alu -6 306 35 304 243 120 82 chr6 162558390 162558898 -26720656 - L1MEc LINE L1 -4281 2284 1500 311 214 101 82 chr6 162558972 162559131 -26720423 - L1MEc LINE L1 -4963 1082 921 282 289 109 0 chr6 162560152 162560280 -26719274 + MIR SINE MIR 75 216 -46 22 35 0 0 chr6 162561100 162561129 -26718425 + AT_rich Low_complexity Low_complexity 1 29 0 1813 121 48 0 chr6 162561149 162561441 -26718113 + AluSx SINE Alu 1 305 0 287 240 53 13 chr6 162561524 162561599 -26717955 + MIR3 SINE MIR 82 159 -49 1992 141 3 0 chr6 162561782 162562065 -26717489 - AluSp SINE Alu -29 284 1 243 336 71 40 chr6 162562326 162562579 -26716975 + MARNA DNA Mariner 91 351 -235 180 0 0 0 chr6 162562746 162562766 -26716788 + (CA)n Simple_repeat Simple_repeat 2 21 0 208 369 25 33 chr6 162562957 162563079 -26716475 - L3b LINE CR1 -127 1456 1336 2293 83 7 10 chr6 162564455 162564745 -26714809 + AluSx SINE Alu 1 289 -23 1653 155 4 0 chr6 162565341 162565593 -26713961 + AluJo SINE Alu 36 288 -24 334 268 65 57 chr6 162566379 162566502 -26713052 - L2 LINE L2 0 3272 3149 217 296 20 50 chr6 162567435 162567550 -26712004 + MIR SINE MIR 48 162 -46 784 196 89 0 chr6 162567705 162567884 -26711670 - MLT1A1 LTR MaLR -46 319 125 904 107 0 20 chr6 162567888 162568037 -26711517 - LOR1a LTR ERV1 0 497 352 1296 217 27 7 chr6 162568402 162568672 -26710882 - LOR1b LTR ERV1 -155 306 28 2172 144 0 12 chr6 162568672 162569011 -26710543 - MER1B DNA MER1_type 0 337 3 1296 217 27 7 chr6 162569011 162569040 -26710514 - LOR1b LTR ERV1 -433 28 1 478 226 52 0 chr6 162569040 162569155 -26710399 - MLT1A1 LTR MaLR -241 124 4 222 321 19 66 chr6 162569158 162569264 -26710290 + L2 LINE L2 2942 3042 -230 442 268 119 83 chr6 162569384 162569828 -26709726 - L2 LINE L2 -4 3268 2809 251 175 0 113 chr6 162569973 162570053 -26709501 + L2 LINE L2 3202 3272 0 187 182 36 91 chr6 162571042 162571097 -26708457 - MIR3 SINE MIR -39 169 118 27 29 0 0 chr6 162572028 162572062 -26707492 + AT_rich Low_complexity Low_complexity 1 34 0 1898 115 9 71 chr6 162572124 162572447 -26707107 + AluSx SINE Alu 1 303 -9 2435 94 51 11 chr6 162572755 162573105 -26706449 - THE1B LTR MaLR 0 364 1 207 114 0 0 chr6 162573583 162573618 -26705936 + (TG)n Simple_repeat Simple_repeat 2 36 0 2332 100 0 13 chr6 162573833 162574143 -26705411 - AluSx SINE Alu -6 306 1 2368 100 0 0 chr6 162574656 162574966 -26704588 - AluY SINE Alu -1 310 1 2234 100 3 19 chr6 162576989 162577299 -26702255 - AluSq SINE Alu -8 305 1 838 208 159 10 chr6 162577337 162577544 -26702010 - MER8 DNA MER2_type -1 238 1 204 318 143 16 chr6 162578768 162578817 -26700737 + MIR SINE MIR 109 150 -112 1972 128 21 97 chr6 162578817 162579239 -26700315 + MLT1B LTR MaLR 1 390 0 204 318 143 16 chr6 162579239 162579315 -26700239 + MIR SINE MIR 150 250 -12 319 321 169 32 chr6 162580567 162581037 -26698517 + L2 LINE L2 2568 3105 -167 2796 182 15 18 chr6 162581068 162581612 -26697942 + MER44D DNA MER2_type 8 604 -1 225 319 66 0 chr6 162581616 162581707 -26697847 + L2 LINE L2 3172 3268 -45 572 118 31 16 chr6 162581731 162581858 -26697696 + GA-rich Low_complexity Low_complexity 2 130 0 472 273 29 41 chr6 162581949 162582121 -26697433 - MIR SINE MIR -71 191 22 21 36 0 0 chr6 162582843 162582871 -26696683 + AT_rich Low_complexity Low_complexity 1 28 0 323 315 45 18 chr6 162583123 162583234 -26696320 - MIR3 SINE MIR -14 194 81 1300 184 31 96 chr6 162583258 162583645 -26695909 + MLT1A2 LTR MaLR 1 362 -12 199 400 0 0 chr6 162583754 162583824 -26695730 - MIR SINE MIR -109 99 30 524 306 65 33 chr6 162584070 162584315 -26695239 - MER70A LTR ERVL -208 264 12 234 182 26 13 chr6 162584586 162584663 -26694891 + CT-rich Low_complexity Low_complexity 3 80 0 239 269 161 21 chr6 162585460 162585553 -26694001 + MER5A DNA MER1_type 1 106 -83 8079 171 90 20 chr6 162585858 162587497 -26692057 - MER52A LTR ERV1 0 1755 3 327 277 120 33 chr6 162587729 162587913 -26691641 + L2 LINE L2 2646 2845 -469 326 286 22 0 chr6 162587892 162587983 -26691571 + L2 LINE L2 3180 3272 0 * 1358 95 33 47 chr6 162588416 162588659 -26690895 + AluSg/x SINE Alu 80 319 0 2282 110 0 0 chr6 162589462 162589762 -26689792 - AluSx SINE Alu -12 300 1 2345 40 0 7 chr6 162590968 162591246 -26688308 + AluY SINE Alu 18 293 -18 24164 31 16 1 chr6 162591472 162597030 -26682524 - L1PA3 LINE L1 -1 6154 476 22 35 0 0 chr6 162597310 162597339 -26682215 + AT_rich Low_complexity Low_complexity 1 29 0 24 85 0 0 chr6 162597374 162597433 -26682121 + AT_rich Low_complexity Low_complexity 1 59 0 195 274 113 113 chr6 162597686 162597916 -26681638 - L2 LINE L2 -3 3269 3040 301 217 14 0 chr6 162597999 162598068 -26681486 + L1ME2 LINE L1 118 187 -6209 2910 237 62 17 chr6 162598144 162599460 -26680094 + L1ME2 LINE L1 4838 6231 -2 459 0 0 0 chr6 162599539 162599590 -26679964 + (TG)n Simple_repeat Simple_repeat 2 52 0 267 372 112 0 chr6 162599686 162599928 -26679626 + L2 LINE L2 2489 2757 -557 425 381 66 0 chr6 162599982 162600179 -26679375 - MIR SINE MIR -25 237 28 2230 84 13 13 chr6 162600519 162600817 -26678737 - AluSg SINE Alu -12 298 1 208 279 0 0 chr6 162602698 162602741 -26676813 + (CG)n Simple_repeat Simple_repeat 1 43 0 1425 180 22 99 chr6 162603153 162603484 -26676070 + MLT1A2 LTR MaLR 1 356 -18 210 37 0 0 chr6 162603484 162603511 -26676043 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2177 95 0 30 chr6 162603514 162603810 -26675744 - AluY SINE Alu -24 287 1 1425 180 22 99 chr6 162603810 162603879 -26675675 + MLT1A2 LTR MaLR 358 374 0 1719 182 14 17 chr6 162604620 162604911 -26674643 - AluJo SINE Alu -22 290 1 857 152 168 21 chr6 162606142 162606333 -26673221 - MER20 DNA MER1_type 0 219 1 250 289 40 0 chr6 162606347 162606423 -26673131 + L2 LINE L2 3193 3271 -1 515 236 83 7 chr6 162607080 162607224 -26672330 - MIR SINE MIR -4 258 104 253 266 158 45 chr6 162607223 162607400 -26672154 - L2 LINE L2 0 3313 3117 * 409 244 59 3 chr6 162607418 162607555 -26671999 + MIR SINE MIR 74 251 -11 258 301 156 58 chr6 162607763 162608488 -26671066 - L2 LINE L2 -450 2864 2069 505 283 58 34 chr6 162608848 162609053 -26670501 - Charlie8 DNA MER1_type -2187 230 21 364 324 93 0 chr6 162609903 162610042 -26669512 - MIR SINE MIR -93 169 18 317 215 31 0 chr6 162611684 162611749 -26667805 - L2 LINE L2 -3 3269 3203 2338 98 3 3 chr6 162612405 162612710 -26666844 + AluSq SINE Alu 1 305 -8 245 128 13 39 chr6 162612710 162612788 -26666766 + (TA)n Simple_repeat Simple_repeat 1 76 0 249 330 134 0 chr6 162613572 162613684 -26665870 + L2 LINE L2 3187 3313 0 551 189 13 46 chr6 162614728 162614881 -26664673 + L1MA10 LINE L1 6172 6319 -15 3431 111 74 7 chr6 162615307 162615864 -26663690 + L1PA13 LINE L1 5565 6158 -5 241 115 0 148 chr6 162617459 162617520 -26662034 + L2 LINE L2 3262 3313 0 221 356 9 52 chr6 162618223 162618338 -26661216 + L2 LINE L2 3121 3230 -42 25 0 0 0 chr6 162618816 162618841 -26660713 + AT_rich Low_complexity Low_complexity 1 25 0 2128 134 0 7 chr6 162619217 162619524 -26660030 - AluSx SINE Alu -7 305 1 655 97 0 0 chr6 162619945 162620038 -26659516 + L1PA8 LINE L1 6071 6163 -9 193 322 78 26 chr6 162620390 162620505 -26659049 - MIR3 SINE MIR -75 133 13 21 36 0 0 chr6 162621081 162621109 -26658445 + AT_rich Low_complexity Low_complexity 1 28 0 219 36 0 0 chr6 162621214 162621242 -26658312 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 247 255 0 0 chr6 162621246 162621297 -26658257 - L2 LINE L2 -17 3296 3246 2269 102 3 10 chr6 162621420 162621733 -26657821 + AluSx SINE Alu 1 311 -1 21 57 0 0 chr6 162621791 162621826 -26657728 + AT_rich Low_complexity Low_complexity 1 35 0 245 125 0 21 chr6 162623704 162623752 -26655802 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 2253 34 41 31 chr6 162624202 162624493 -26655061 - AluY SINE Alu -17 294 1 3282 91 13 9 chr6 162624743 162625194 -26654360 + MLT2A2 LTR ERVL 1 453 0 248 337 10 10 chr6 162625953 162626051 -26653503 + (TATG)n Simple_repeat Simple_repeat 3 100 0 283 388 26 35 chr6 162626248 162626588 -26652966 - L2 LINE L2 -433 2881 2545 2317 110 10 0 chr6 162626655 162626963 -26652591 - AluSx SINE Alu -1 311 1 22 0 0 0 chr6 162628437 162628459 -26651095 + AT_rich Low_complexity Low_complexity 1 22 0 2364 87 0 13 chr6 162631354 162631663 -26647891 + AluSx SINE Alu 1 305 -7 478 326 100 11 chr6 162632050 162632491 -26647063 + LTR33A LTR ERVL 36 515 -8 1958 150 61 6 chr6 162632781 162633127 -26646427 - MER47A DNA MER2_type -1 365 1 349 276 75 30 chr6 162633137 162633271 -26646283 + L2 LINE L2 3133 3272 0 289 296 134 42 chr6 162633788 162634095 -26645459 + MLT1L LTR MaLR 151 485 -130 251 316 65 29 chr6 162634788 162634927 -26644627 + MIR SINE MIR 98 241 -21 2121 124 0 3 chr6 162635874 162636180 -26643374 + AluSq SINE Alu 1 305 -8 545 271 154 19 chr6 162636231 162636445 -26643109 - MIR SINE MIR -19 243 1 263 246 105 0 chr6 162636672 162636729 -26642825 - L2 LINE L2 -4 3268 3206 281 360 29 0 chr6 162637011 162637150 -26642404 + MIR SINE MIR 12 154 -108 24 0 0 0 chr6 162637773 162637797 -26641757 + AT_rich Low_complexity Low_complexity 1 24 0 347 319 22 87 chr6 162638760 162638989 -26640565 - L3 LINE CR1 -91 1486 1273 796 213 117 44 chr6 162639015 162639282 -26640272 + Charlie4a DNA MER1_type 47 350 -1611 2116 111 14 14 chr6 162639282 162639571 -26639983 - AluSx SINE Alu -23 289 1 796 213 117 44 chr6 162639571 162639670 -26639884 + Charlie4a DNA MER1_type 350 440 -68 5418 150 21 18 chr6 162639670 162641546 -26638008 + L1MA7 LINE L1 4410 6291 0 3769 221 66 16 chr6 162641566 162642953 -26636601 + L1MD2 LINE L1 4894 6347 -12 1773 153 49 0 chr6 162642957 162643244 -26636310 + AluSx SINE Alu 1 301 -11 272 91 23 0 chr6 162643557 162643601 -26635953 + (TTCC)n Simple_repeat Simple_repeat 3 47 0 2264 122 0 0 chr6 162643978 162644281 -26635273 + AluSx SINE Alu 1 303 -9 341 272 48 10 chr6 162644619 162644722 -26634832 + MIR3 SINE MIR 95 201 -7 686 327 36 24 chr6 162644799 162645047 -26634507 - MIR SINE MIR 0 262 12 551 170 20 0 chr6 162645343 162645443 -26634111 - MER58B DNA MER1_type 0 341 240 21 0 0 0 chr6 162645564 162645585 -26633969 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 162645759 162645781 -26633773 + AT_rich Low_complexity Low_complexity 1 22 0 2240 182 64 38 chr6 162647004 162647352 -26632202 + MER44D DNA MER2_type 1 424 -2063 2236 107 10 0 chr6 162647352 162647651 -26631903 - AluSx SINE Alu -10 302 1 2240 182 64 38 chr6 162647651 162647836 -26631718 + MER44D DNA MER2_type 424 603 -2 310 241 157 0 chr6 162650419 162650502 -26629052 - MER5B DNA MER1_type -82 96 1 195 257 92 46 chr6 162650505 162650614 -26628940 - L2 LINE L2 -191 3081 2968 342 313 204 32 chr6 162651711 162652024 -26627530 + L3 LINE CR1 1192 1558 -19 313 235 0 0 chr6 162652139 162652241 -26627313 + L1ME1 LINE L1 2281 2382 -4014 1784 203 34 61 chr6 162652246 162652842 -26626712 + L1ME1 LINE L1 5624 6362 -41 1731 163 0 36 chr6 162653628 162653929 -26625625 + AluJo SINE Alu 1 290 -22 671 227 122 36 chr6 162655223 162655501 -26624053 - L2 LINE L2 -1 3312 3011 195 114 0 0 chr6 162656156 162656191 -26623363 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1760 197 72 25 chr6 162656397 162656839 -26622715 - MLT1C LTR MaLR -4 463 1 2143 121 0 3 chr6 162657575 162657873 -26621681 - AluSx SINE Alu -15 297 1 23 33 0 0 chr6 162658563 162658593 -26620961 + AT_rich Low_complexity Low_complexity 1 30 0 2311 112 0 0 chr6 162660246 162660549 -26619005 - AluSg SINE Alu -7 303 1 312 211 32 21 chr6 162661388 162661483 -26618071 + MER103 DNA DNA 63 158 -8 543 195 0 0 chr6 162661644 162661767 -26617787 + (TG)n Simple_repeat Simple_repeat 2 124 0 25 51 0 0 chr6 162662457 162662496 -26617058 + AT_rich Low_complexity Low_complexity 1 39 0 337 203 140 14 chr6 162662904 162663047 -26616507 + L1ME4a LINE L1 5961 6121 0 198 0 0 0 chr6 162663687 162663709 -26615845 + (T)n Simple_repeat Simple_repeat 1 22 0 1074 203 15 31 chr6 162665962 162666121 -26613433 - MER33 DNA MER1_type -2265 320 167 1584 166 7 60 chr6 162666121 162666422 -26613132 - AluJb SINE Alu -27 285 1 1074 203 15 31 chr6 162666422 162666587 -26612967 - MER33 DNA MER1_type -2418 167 1 438 94 0 0 chr6 162666839 162666903 -26612651 + (TG)n Simple_repeat Simple_repeat 2 65 0 196 208 0 42 chr6 162667008 162667056 -26612498 + L2 LINE L2 3267 3312 -1 256 233 0 23 chr6 162667171 162667257 -26612297 + GA-rich Low_complexity Low_complexity 1 84 0 23 33 0 0 chr6 162668353 162668383 -26611171 + AT_rich Low_complexity Low_complexity 1 30 0 1584 188 29 4 chr6 162668529 162668806 -26610748 - AluJo SINE Alu -28 284 1 731 219 56 22 chr6 162668826 162669044 -26610510 - MIR SINE MIR -25 237 13 2477 75 0 0 chr6 162669504 162669798 -26609756 + AluSc SINE Alu 1 294 -15 24 32 0 0 chr6 162670044 162670075 -26609479 + AT_rich Low_complexity Low_complexity 1 31 0 3390 111 42 6 chr6 162671951 162672456 -26607098 + MER1A DNA MER1_type 1 523 -4 573 234 0 0 chr6 162672514 162672625 -26606929 + MER45A DNA AcHobo 48 158 -20 340 315 79 8 chr6 162672792 162672919 -26606635 + MER5A DNA MER1_type 54 189 0 398 336 30 60 chr6 162673362 162673630 -26605924 + MIR SINE MIR 1 260 -2 1464 177 104 3 chr6 162673918 162674234 -26605320 + MLT2C1 LTR ERVL 1 348 -49 306 0 0 0 chr6 162674255 162674289 -26605265 + (CA)n Simple_repeat Simple_repeat 2 35 0 429 76 0 0 chr6 162674289 162674355 -26605199 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 484 256 39 16 chr6 162674355 162674484 -26605070 - FRAM SINE Alu -44 132 1 24 53 0 0 chr6 162674485 162674523 -26605031 + AT_rich Low_complexity Low_complexity 1 38 0 1302 161 23 118 chr6 162674523 162674872 -26604682 - MLT1A1 LTR MaLR -12 353 38 332 283 0 11 chr6 162674956 162675048 -26604506 + L1MC4 LINE L1 6615 6705 -1337 204 176 12 24 chr6 162675057 162675142 -26604412 + (TA)n Simple_repeat Simple_repeat 1 84 0 1270 78 0 0 chr6 162675193 162675347 -26604207 - AluY SINE Alu -43 268 115 340 314 82 44 chr6 162676442 162676601 -26602953 - MIR SINE MIR -10 252 88 354 175 0 0 chr6 162676675 162676755 -26602799 + CT-rich Low_complexity Low_complexity 2 81 0 222 105 0 0 chr6 162676767 162676805 -26602749 + (CA)n Simple_repeat Simple_repeat 1 38 0 289 277 62 9 chr6 162678627 162678739 -26600815 - MIR SINE MIR -64 198 81 906 208 6 12 chr6 162678841 162679014 -26600540 + FAM SINE Alu 1 172 -3 22 35 0 0 chr6 162679671 162679700 -26599854 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr6 162680473 162680494 -26599060 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 27 0 0 0 chr6 162681110 162681137 -26598417 + AT_rich Low_complexity Low_complexity 1 27 0 631 181 0 47 chr6 162681584 162681711 -26597843 + FLAM_C SINE Alu 1 121 -22 274 314 113 13 chr6 162682291 162682530 -26597024 + L1 LINE L1 3529 3791 -2355 203 185 37 19 chr6 162682675 162682729 -26596825 + A-rich Low_complexity Low_complexity 1 55 0 1146 176 75 43 chr6 162682864 162683119 -26596435 + MLT1E LTR MaLR 10 272 -321 344 179 15 0 chr6 162683116 162683183 -26596371 + U4 snRNA snRNA 1 68 -77 * 1413 200 26 63 chr6 162683179 162683529 -26596025 + MLT1E LTR MaLR 257 593 0 2802 215 67 38 chr6 162683566 162684656 -26594898 - L1ME1 LINE L1 0 6235 5122 2375 249 41 35 chr6 162684653 162685008 -26594546 - L1ME1 LINE L1 -4606 1790 1439 * 2216 116 0 7 chr6 162685008 162685309 -26594245 + AluSq SINE Alu 1 299 -14 2375 249 41 35 chr6 162685309 162686013 -26593541 - L1ME1 LINE L1 -4957 1439 725 998 273 44 54 chr6 162686034 162686463 -26593091 - L1ME1 LINE L1 -5768 628 204 2208 129 0 10 chr6 162686755 162687066 -26592488 - AluSx SINE Alu -4 308 1 307 263 53 7 chr6 162687297 162687449 -26592105 + L1MC4a LINE L1 5724 5882 -1926 257 233 17 0 chr6 162688515 162688575 -26590979 + CT-rich Low_complexity Low_complexity 2 62 0 329 216 62 52 chr6 162688580 162688677 -26590877 - L2 LINE L2 -1 3312 3215 1981 135 42 3 chr6 162689338 162689626 -26589928 + AluSp SINE Alu 1 299 -14 622 243 43 0 chr6 162689682 162689822 -26589732 - MIR SINE MIR -108 154 9 496 308 84 29 chr6 162689955 162690228 -26589326 - L3 LINE CR1 -431 1146 859 484 187 148 53 chr6 162690240 162690449 -26589105 - L1ME4a LINE L1 -126 5995 5767 2359 110 0 0 chr6 162690520 162690829 -26588725 - AluSc SINE Alu 0 309 1 245 339 156 9 chr6 162691194 162691303 -26588251 - MIR SINE MIR -118 144 20 210 313 113 57 chr6 162692620 162692767 -26586787 - L2 LINE L2 -17 3255 3118 204 40 0 0 chr6 162692767 162692792 -26586762 + (CTGGGG)n Simple_repeat Simple_repeat 1 25 0 210 313 113 57 chr6 162692792 162692909 -26586645 - L2 LINE L2 -154 3118 2976 225 0 0 0 chr6 162693146 162693171 -26586383 + (A)n Simple_repeat Simple_repeat 1 25 0 1384 218 29 6 chr6 162693254 162693602 -26585952 + L1MB8 LINE L1 5823 6178 0 260 333 26 34 chr6 162693939 162694056 -26585498 + MIR3 SINE MIR 42 157 -51 2268 116 3 0 chr6 162694070 162694381 -26585173 + AluSx SINE Alu 1 312 0 242 250 0 0 chr6 162695159 162695211 -26584343 + (TA)n Simple_repeat Simple_repeat 1 52 0 2387 58 34 3 chr6 162695306 162695601 -26583953 + AluY SINE Alu 1 304 -7 669 260 97 75 chr6 162695772 162696103 -26583451 + MER102b DNA MER1_type 4 341 0 861 304 4 4 chr6 162697413 162697659 -26581895 + MIR SINE MIR 16 257 -5 304 292 8 33 chr6 162698792 162698912 -26580642 - MER103 DNA DNA -47 119 3 2358 94 0 0 chr6 162700035 162700333 -26579221 + AluSg SINE Alu 1 298 -12 319 242 44 0 chr6 162700334 162700425 -26579129 + MER103 DNA DNA 71 165 -1 715 261 65 51 chr6 162700539 162700953 -26578601 + MLT1J1 LTR MaLR 1 420 -26 2423 71 3 0 chr6 162701299 162701595 -26577959 - AluSp SINE Alu -16 297 1 1885 140 20 10 chr6 162701595 162701888 -26577666 - AluSx SINE Alu -16 296 1 382 237 41 0 chr6 162701914 162702011 -26577543 - L1ME4a LINE L1 -37 6084 5984 190 308 192 0 chr6 162702327 162702431 -26577123 + L2 LINE L2 3146 3269 -3 240 253 33 55 chr6 162702756 162702847 -26576707 + MIR3 SINE MIR 114 202 -6 343 43 0 22 chr6 162703640 162703686 -26575868 + AluY SINE Alu 9 53 -249 532 74 25 37 chr6 162703819 162703900 -26575654 + MADE1 DNA Mariner 1 80 0 1693 145 38 10 chr6 162705333 162705623 -26573931 + AluJb SINE Alu 1 298 -14 21 36 0 0 chr6 162705885 162705913 -26573641 + AT_rich Low_complexity Low_complexity 1 28 0 676 11 22 11 chr6 162705965 162706054 -26573500 + (TTTC)n Simple_repeat Simple_repeat 2 91 0 720 192 62 73 chr6 162706063 162706240 -26573314 + MER58B DNA MER1_type 167 341 0 974 287 63 34 chr6 162708094 162708540 -26571014 - MLT1H LTR MaLR 0 549 91 273 231 192 13 chr6 162708617 162708695 -26570859 - MLT1H LTR MaLR -452 97 6 336 222 111 12 chr6 162708726 162708807 -26570747 - MIR3 SINE MIR -4 204 116 2822 252 96 87 chr6 162708946 162709821 -26569733 + L1MC4 LINE L1 5609 6475 -1567 2261 115 0 0 chr6 162709821 162710126 -26569428 + AluSx SINE Alu 1 305 -7 2822 252 96 87 chr6 162710126 162710453 -26569101 + L1MC4 LINE L1 6475 6798 -1244 1720 99 4 21 chr6 162710453 162710686 -26568868 - MER30 DNA MER1_type 0 230 2 2822 252 96 87 chr6 162710686 162710739 -26568815 + L1MC4 LINE L1 6798 6849 -1193 204 40 0 0 chr6 162710739 162710764 -26568790 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2822 252 96 87 chr6 162710764 162711817 -26567737 + L1MC4 LINE L1 6849 8041 -1 495 282 96 21 chr6 162711846 162712034 -26567520 + MIR SINE MIR 49 250 -12 6897 34 0 1 chr6 162712160 162712962 -26566592 - L1PA5 LINE L1 -1 6153 5353 9074 44 0 5 chr6 162712966 162714803 -26564751 - L1PA3 LINE L1 -3 6152 4321 2497 38 0 0 chr6 162714803 162715093 -26564461 + L1PA3 LINE L1 4040 4329 -1817 2320 84 0 26 chr6 162715093 162715401 -26564153 - AluY SINE Alu 0 311 12 294 331 159 13 chr6 162716187 162716344 -26563210 - MIR3 SINE MIR -6 202 23 2121 164 38 31 chr6 162716459 162717004 -26562550 + MLT2A2 LTR ERVL 1 554 0 180 333 154 8 chr6 162717453 162717576 -26561978 - L2 LINE L2 0 3272 3132 360 0 0 0 chr6 162717682 162717722 -26561832 + (CA)n Simple_repeat Simple_repeat 2 41 0 213 233 189 22 chr6 162717927 162718017 -26561537 - MIR3 SINE MIR -21 187 83 201 302 100 0 chr6 162719976 162720072 -26559482 - MIR SINE MIR -67 141 63 258 122 0 81 chr6 162721033 162721111 -26558443 + (CAAAA)n Simple_repeat Simple_repeat 1 71 0 369 0 0 0 chr6 162721185 162721226 -26558328 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1819 191 14 33 chr6 162721470 162721831 -26557723 + MLT1A1 LTR MaLR 1 354 -11 14094 178 17 5 chr6 162722094 162725469 -26554085 - L1PA14 LINE L1 0 6161 2747 183 328 137 8 chr6 162725656 162725787 -26553767 - MIR3 SINE MIR -21 187 40 2258 250 78 2 chr6 162725806 162726443 -26553111 - MER20B DNA MER1_type 0 783 98 2208 144 29 0 chr6 162726446 162726821 -26552733 - MST-int LTR MaLR -1263 388 3 238 83 28 0 chr6 162726821 162726857 -26552697 - MLT2C1 LTR ERVL -4 393 357 1941 154 61 143 chr6 162726893 162727453 -26552101 - MLT2B3 LTR ERVL -40 514 1 193 321 52 45 chr6 162728558 162728692 -26550862 - MIR SINE MIR -98 164 30 459 0 0 0 chr6 162728996 162729047 -26550507 + (TG)n Simple_repeat Simple_repeat 2 52 0 368 295 92 40 chr6 162729892 162730065 -26549489 + MIR3 SINE MIR 24 205 -3 3246 142 40 98 chr6 162730767 162731451 -26548103 + MER73 LTR ERVL 1 644 0 2857 120 23 35 chr6 162732632 162733065 -26546489 - MSTA LTR MaLR 0 428 1 364 352 55 21 chr6 162734757 162734902 -26544652 - L2 LINE L2 -2 3270 3121 2602 219 92 44 chr6 162735236 162735986 -26543568 - MER21B LTR ERV1 -69 794 9 23 0 0 0 chr6 162736217 162736240 -26543314 + AT_rich Low_complexity Low_complexity 1 23 0 384 275 162 7 chr6 162736339 162736481 -26543073 - L2 LINE L2 -192 3080 2917 502 254 249 10 chr6 162736643 162736836 -26542718 - MLT1E LTR MaLR -354 239 1 2196 120 3 0 chr6 162737088 162737380 -26542174 + AluSx SINE Alu 1 293 -19 219 36 0 0 chr6 162738256 162738284 -26541270 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2303 81 0 17 chr6 162738287 162738584 -26540970 - AluSg SINE Alu -18 292 1 2032 110 37 23 chr6 162739228 162739528 -26540026 - AluSx SINE Alu -8 304 1 180 0 0 0 chr6 162739923 162739943 -26539611 + (TCC)n Simple_repeat Simple_repeat 3 22 0 308 208 0 78 chr6 162740589 162740632 -26538922 + LTR16B LTR ERVL 394 430 -34 2266 104 81 26 chr6 162740632 162740977 -26538577 - THE1B LTR MaLR 0 364 1 308 208 0 78 chr6 162740977 162741010 -26538544 + LTR16B LTR ERVL 430 464 0 1363 190 11 25 chr6 162741089 162741363 -26538191 - MLT1C LTR MaLR -2 465 196 238 354 39 23 chr6 162742689 162742819 -26536735 + L2 LINE L2 3182 3313 0 2612 51 0 6 chr6 162743092 162743405 -26536149 - AluY SINE Alu 0 311 1 339 130 0 0 chr6 162746101 162746155 -26533399 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 802 261 65 17 chr6 162746622 162746852 -26532702 + MIR SINE MIR 22 262 0 1878 258 231 26 chr6 162746879 162747735 -26531819 + L2 LINE L2 1809 2489 -824 2308 106 33 0 chr6 162747735 162748037 -26531517 - AluSx SINE Alu 0 312 1 1878 258 231 26 chr6 162748037 162748428 -26531126 + L2 LINE L2 2489 3313 0 1908 159 42 24 chr6 162748514 162748897 -26530657 + MLT1B LTR MaLR 1 390 0 1217 210 103 62 chr6 162749138 162749395 -26530159 - L1MC5 LINE L1 -430 7531 7286 1734 175 29 0 chr6 162749395 162749696 -26529858 - AluSx SINE Alu 0 309 1 1217 210 103 62 chr6 162749696 162749988 -26529566 - L1MC5 LINE L1 -675 7286 6957 548 342 111 63 chr6 162750282 162750933 -26528621 - L2 LINE L2 -3 3269 2594 455 352 39 13 chr6 162750994 162751227 -26528327 - MIR SINE MIR -15 247 9 252 316 40 88 chr6 162751260 162751532 -26528022 + MIR SINE MIR 1 259 -3 2313 113 0 0 chr6 162752150 162752451 -26527103 + AluSx SINE Alu 1 301 -11 1078 130 0 0 chr6 162753545 162753699 -26525855 + AluSg/x SINE Alu 135 288 -24 3189 264 110 25 chr6 162753902 162755139 -26524415 + L1MCc LINE L1 17 1358 -5065 7806 20 0 0 chr6 162756094 162757141 -26522413 + L1PA3 LINE L1 5109 6155 0 195 320 72 0 chr6 162757882 162757979 -26521575 - MIR SINE MIR -6 256 153 248 253 22 33 chr6 162758044 162758135 -26521419 - MARNA DNA Mariner -62 524 435 740 207 103 10 chr6 162758275 162758478 -26521076 + L1M4 LINE L1 4632 4853 -1293 6325 166 105 69 chr6 162758705 162759118 -26520436 - L1MC3 LINE L1 -169 7616 7219 236 299 35 0 chr6 162759118 162759205 -26520349 - MLT1F1 LTR MaLR -433 134 45 6325 166 105 69 chr6 162759205 162760406 -26519148 - L1MC3 LINE L1 -566 7219 5856 4806 141 89 19 chr6 162760412 162760882 -26518672 - Ricksha_b DNA DNA -1607 1247 811 2059 105 25 7 chr6 162760882 162761193 -26518361 - AluSx SINE Alu 0 316 1 4806 141 89 19 chr6 162761193 162761358 -26518196 - Ricksha_b DNA DNA -2043 811 659 886 18 9 9 chr6 162761358 162761471 -26518083 + (GA)n Simple_repeat Simple_repeat 2 114 0 4806 141 89 19 chr6 162761471 162761776 -26517778 - Ricksha_b DNA DNA -2195 659 239 584 227 33 0 chr6 162761768 162761918 -26517636 - Ricksha_a DNA DNA -1025 156 2 * 2003 195 60 0 chr6 162761920 162762355 -26517199 - L1MC3 LINE L1 -1921 5864 5404 1602 184 65 18 chr6 162762347 162762734 -26516820 + L1MC3 LINE L1 7375 7779 -6 * 369 0 0 0 chr6 162762884 162762925 -26516629 + (TG)n Simple_repeat Simple_repeat 2 42 0 573 253 0 38 chr6 162762925 162763083 -26516471 - FRAM SINE Alu -13 153 2 2232 74 7 3 chr6 162763090 162763402 -26516152 - AluY SINE Alu 0 313 1 21 0 0 0 chr6 162766526 162766547 -26513007 + AT_rich Low_complexity Low_complexity 1 21 0 1915 143 0 17 chr6 162768505 162768792 -26510762 + AluSx SINE Alu 1 282 -30 21 36 0 0 chr6 162768913 162768941 -26510613 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr6 162770391 162770431 -26509123 + (TG)n Simple_repeat Simple_repeat 1 40 0 603 242 33 0 chr6 162770485 162770646 -26508908 - MIR SINE MIR -48 214 51 1220 154 41 55 chr6 162770828 162771048 -26508506 + AluJb SINE Alu 84 300 -12 24 53 0 0 chr6 162771450 162771488 -26508066 + AT_rich Low_complexity Low_complexity 1 38 0 2163 121 0 23 chr6 162771696 162772002 -26507552 + AluSx SINE Alu 1 299 -13 1156 92 0 0 chr6 162772563 162772705 -26506849 + AluSg/x SINE Alu 156 297 -15 218 205 0 0 chr6 162773024 162773063 -26506491 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 250 293 254 5 chr6 162773355 162773560 -26505994 - L2 LINE L2 -46 3267 3012 1222 265 52 45 chr6 162773579 162774024 -26505530 - L2 LINE L2 -780 2534 2087 2783 170 122 11 chr6 162774024 162774688 -26504866 + L1MB4 LINE L1 5434 6171 -9 399 237 138 0 chr6 162774702 162774854 -26504700 - L2 LINE L2 -1222 2092 1920 567 302 65 9 chr6 162776215 162776430 -26503124 - MIR SINE MIR -5 257 31 842 229 20 71 chr6 162776756 162777009 -26502545 - MIR SINE MIR -2 260 21 369 200 0 0 chr6 162777400 162777465 -26502089 - MER2 DNA MER2_type -1 344 280 24 67 0 0 chr6 162777465 162777510 -26502044 + AT_rich Low_complexity Low_complexity 1 45 0 1289 146 5 0 chr6 162777635 162777841 -26501713 - MER2 DNA MER2_type -138 207 1 913 197 9 52 chr6 162777903 162778061 -26501493 + MLT1A1 LTR MaLR 1 147 -218 1951 153 3 7 chr6 162778061 162778355 -26501199 + AluJb SINE Alu 1 293 -19 913 197 9 52 chr6 162778355 162778429 -26501125 + MLT1A1 LTR MaLR 147 223 -142 1403 209 15 32 chr6 162778436 162778775 -26500779 + MLT1A1 LTR MaLR 33 365 0 222 312 37 18 chr6 162778805 162778914 -26500640 - MIR SINE MIR -60 148 38 1923 150 2 89 chr6 162779322 162779749 -26499805 + MLT1B LTR MaLR 1 390 0 211 214 0 0 chr6 162780237 162780279 -26499275 - L2 LINE L2 -5 3308 3267 22 0 0 0 chr6 162781471 162781493 -26498061 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 162781931 162781953 -26497601 + AT_rich Low_complexity Low_complexity 1 22 0 251 331 31 16 chr6 162782972 162783099 -26496455 - MIR SINE MIR 0 262 134 2257 93 3 0 chr6 162783112 162783401 -26496153 + AluSx SINE Alu 4 293 -19 783 132 53 0 chr6 162783405 162783557 -26495997 + L1MA7 LINE L1 6132 6291 0 247 191 0 0 chr6 162783578 162783620 -26495934 + MIR SINE MIR 204 245 -17 2387 109 0 0 chr6 162783675 162783987 -26495567 - AluSx SINE Alu 0 312 1 482 261 92 0 chr6 162784138 162784333 -26495221 - HAL1 LINE L1 -2 2505 2293 1464 178 72 33 chr6 162784431 162784763 -26494791 - MLT1A2 LTR MaLR -29 345 1 586 248 165 43 chr6 162784764 162785018 -26494536 + LTR16A LTR ERVL 160 444 -6 1179 265 126 39 chr6 162785062 162786263 -26493291 - HAL1 LINE L1 -286 2221 917 283 327 59 40 chr6 162786601 162786803 -26492751 - HAL1 LINE L1 -2301 206 1 344 181 181 43 chr6 162788232 162788332 -26491222 - MER96B DNA MER1_type? -4 413 294 2289 51 0 7 chr6 162788332 162788606 -26490948 + AluY SINE Alu 12 283 -28 344 181 181 43 chr6 162788606 162788621 -26490933 - MER96B DNA MER1_type? -123 294 282 381 160 170 0 chr6 162788629 162788723 -26490831 + L1MC3 LINE L1 7509 7618 -167 383 136 18 109 chr6 162788727 162788741 -26490813 + MER96B DNA MER1_type? 131 145 -272 2301 97 0 13 chr6 162788741 162789050 -26490504 + AluSg SINE Alu 1 305 -5 383 136 18 109 chr6 162789050 162789145 -26490409 + MER96B DNA MER1_type? 145 230 -187 353 320 100 27 chr6 162789431 162789581 -26489973 + MIR3 SINE MIR 15 175 -33 1525 162 36 26 chr6 162789704 162790013 -26489541 + AluSx SINE Alu 1 312 0 1707 259 289 14 chr6 162790016 162790868 -26488686 - L2 LINE L2 -420 2894 1809 802 261 65 17 chr6 162790895 162791125 -26488429 - MIR SINE MIR 0 262 22 339 130 0 0 chr6 162791592 162791646 -26487908 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 2508 65 10 0 chr6 162794342 162794650 -26484904 + AluY SINE Alu 1 311 0 22 0 0 0 chr6 162795023 162795045 -26484509 + AT_rich Low_complexity Low_complexity 1 22 0 2036 94 11 3 chr6 162797072 162797358 -26482196 - AluSg SINE Alu -22 288 1 21 57 0 0 chr6 162799118 162799153 -26480401 + AT_rich Low_complexity Low_complexity 1 35 0 256 284 26 17 chr6 162799378 162799494 -26480060 - L1MC4a LINE L1 -1893 5915 5799 239 235 66 120 chr6 162799537 162799567 -26479987 - L1MC4a LINE L1 -426 5695 5665 14890 129 21 11 chr6 162799567 162799684 -26479870 - Tigger1 DNA MER2_type 0 2418 2304 1989 107 62 7 chr6 162799684 162799973 -26479581 + AluSx SINE Alu 1 305 -7 14890 129 21 11 chr6 162799973 162800540 -26479014 - Tigger1 DNA MER2_type -114 2304 1744 2177 131 0 10 chr6 162800540 162800853 -26478701 - AluSx SINE Alu -2 310 1 14890 129 21 11 chr6 162800853 162802562 -26476992 - Tigger1 DNA MER2_type -674 1744 1 239 235 66 120 chr6 162802562 162802714 -26476840 - L1MC4a LINE L1 -456 5665 5523 432 244 98 26 chr6 162803013 162803320 -26476234 - L1MC4a LINE L1 -1439 4707 4379 312 258 83 25 chr6 162803553 162803673 -26475881 - L1MC4a LINE L1 -1909 5899 5773 358 206 135 95 chr6 162803674 162803926 -26475628 - HAL1 LINE L1 -3 2504 2243 180 0 0 0 chr6 162803978 162803998 -26475556 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 306 246 39 39 chr6 162804104 162804234 -26475320 - L1MC4a LINE L1 -1944 4202 4073 2263 92 0 0 chr6 162804340 162804634 -26474920 - AluY SINE Alu -17 294 1 281 345 17 0 chr6 162806084 162806203 -26473351 - MER117 DNA MER1_type -47 150 30 198 341 67 52 chr6 162807289 162807424 -26472130 - L2 LINE L2 -9 3263 3127 759 235 43 99 chr6 162807457 162807781 -26471773 + L2 LINE L2 2990 3295 -18 195 42 0 0 chr6 162807947 162807971 -26471583 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 759 160 7 7 chr6 162809906 162810056 -26469498 - L1MA10 LINE L1 0 6334 6185 247 193 0 0 chr6 162810057 162810122 -26469432 - L1ME LINE L1 -322 5914 5852 3745 252 94 14 chr6 162810156 162812308 -26467246 - L1ME LINE L1 -376 5859 3524 3579 251 19 22 chr6 162812357 162813498 -26466056 - L1ME LINE L1 -5224 1172 35 617 212 103 0 chr6 162814438 162814603 -26464951 - Charlie1 DNA MER1_type -1 2760 2579 180 200 0 0 chr6 162814650 162814690 -26464864 + CT-rich Low_complexity Low_complexity 3 42 0 731 266 80 0 chr6 162814769 162814995 -26464559 - Charlie1a DNA MER1_type -1210 245 2 21 57 0 0 chr6 162815014 162815049 -26464505 + AT_rich Low_complexity Low_complexity 1 35 0 1805 258 61 36 chr6 162815080 162815837 -26463717 - L1ME3A LINE L1 -9 6579 5804 4614 182 25 27 chr6 162815844 162816306 -26463248 - Tigger6a DNA MER2_type -514 1083 622 1957 125 84 0 chr6 162816306 162816593 -26462961 - AluSx SINE Alu -1 311 1 4614 182 25 27 chr6 162816593 162817144 -26462410 - Tigger6a DNA MER2_type -975 622 72 946 304 68 15 chr6 162817188 162817846 -26461708 - L1ME3A LINE L1 -763 5801 5109 498 69 0 0 chr6 162818003 162818075 -26461479 - L1PA7 LINE L1 0 6154 6083 265 234 31 39 chr6 162818088 162818216 -26461338 - L1ME3A LINE L1 -1471 5093 4967 216 97 0 0 chr6 162818351 162818382 -26461172 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 1614 166 42 8 chr6 162818394 162818659 -26460895 - AluJb SINE Alu -4 308 35 304 243 120 82 chr6 162818740 162819248 -26460306 - L1MEc LINE L1 -4281 2284 1500 311 214 101 82 chr6 162819322 162819481 -26460073 - L1MEc LINE L1 -4963 1082 921 282 289 109 0 chr6 162820502 162820630 -26458924 + MIR SINE MIR 75 216 -46 22 35 0 0 chr6 162821450 162821479 -26458075 + AT_rich Low_complexity Low_complexity 1 29 0 1813 121 48 0 chr6 162821499 162821791 -26457763 + AluSx SINE Alu 1 305 0 287 240 53 13 chr6 162821874 162821949 -26457605 + MIR3 SINE MIR 82 159 -49 1992 141 3 0 chr6 162822131 162822414 -26457140 - AluSp SINE Alu -29 284 1 243 336 71 40 chr6 162822675 162822928 -26456626 + MARNA DNA Mariner 91 351 -235 180 0 0 0 chr6 162823095 162823115 -26456439 + (CA)n Simple_repeat Simple_repeat 2 21 0 208 369 25 33 chr6 162823306 162823428 -26456126 - L3b LINE CR1 -127 1456 1336 2293 83 7 10 chr6 162824804 162825094 -26454460 + AluSx SINE Alu 1 289 -23 1653 155 4 0 chr6 162825690 162825942 -26453612 + AluJo SINE Alu 36 288 -24 334 268 65 57 chr6 162826728 162826851 -26452703 - L2 LINE L2 0 3272 3149 217 296 20 50 chr6 162827784 162827899 -26451655 + MIR SINE MIR 48 162 -46 784 196 89 0 chr6 162828054 162828233 -26451321 - MLT1A1 LTR MaLR -46 319 125 904 107 0 20 chr6 162828237 162828386 -26451168 - LOR1a LTR ERV1 0 497 352 1296 217 27 7 chr6 162828751 162829021 -26450533 - LOR1b LTR ERV1 -155 306 28 2172 144 0 12 chr6 162829021 162829360 -26450194 - MER1B DNA MER1_type 0 337 3 1296 217 27 7 chr6 162829360 162829389 -26450165 - LOR1b LTR ERV1 -433 28 1 478 226 52 0 chr6 162829389 162829504 -26450050 - MLT1A1 LTR MaLR -241 124 4 222 321 19 66 chr6 162829507 162829613 -26449941 + L2 LINE L2 2942 3042 -230 442 268 119 83 chr6 162829733 162830177 -26449377 - L2 LINE L2 -4 3268 2809 251 175 0 113 chr6 162830322 162830402 -26449152 + L2 LINE L2 3202 3272 0 187 182 36 91 chr6 162831389 162831444 -26448110 - MIR3 SINE MIR -39 169 118 27 29 0 0 chr6 162832375 162832409 -26447145 + AT_rich Low_complexity Low_complexity 1 34 0 1857 121 9 71 chr6 162832471 162832794 -26446760 + AluSx SINE Alu 1 303 -9 2435 94 51 11 chr6 162833102 162833452 -26446102 - THE1B LTR MaLR 0 364 1 207 114 0 0 chr6 162833930 162833965 -26445589 + (TG)n Simple_repeat Simple_repeat 2 36 0 2332 100 0 13 chr6 162834180 162834490 -26445064 - AluSx SINE Alu -6 306 1 2368 100 0 0 chr6 162835003 162835313 -26444241 - AluY SINE Alu -1 310 1 2234 100 3 19 chr6 162837336 162837646 -26441908 - AluSq SINE Alu -8 305 1 838 208 159 10 chr6 162837684 162837891 -26441663 - MER8 DNA MER2_type -1 238 1 204 318 143 16 chr6 162839115 162839164 -26440390 + MIR SINE MIR 109 150 -112 1972 128 21 97 chr6 162839164 162839586 -26439968 + MLT1B LTR MaLR 1 390 0 204 318 143 16 chr6 162839586 162839662 -26439892 + MIR SINE MIR 150 250 -12 319 321 169 32 chr6 162840914 162841384 -26438170 + L2 LINE L2 2568 3105 -167 2796 182 15 18 chr6 162841415 162841959 -26437595 + MER44D DNA MER2_type 8 604 -1 225 319 66 0 chr6 162841963 162842054 -26437500 + L2 LINE L2 3172 3268 -45 572 118 31 16 chr6 162842078 162842205 -26437349 + GA-rich Low_complexity Low_complexity 2 130 0 472 273 29 41 chr6 162842296 162842468 -26437086 - MIR SINE MIR -71 191 22 21 36 0 0 chr6 162843190 162843218 -26436336 + AT_rich Low_complexity Low_complexity 1 28 0 323 315 45 18 chr6 162843470 162843581 -26435973 - MIR3 SINE MIR -14 194 81 1300 184 31 96 chr6 162843605 162843992 -26435562 + MLT1A2 LTR MaLR 1 362 -12 199 400 0 0 chr6 162844101 162844171 -26435383 - MIR SINE MIR -109 99 30 524 306 65 33 chr6 162844417 162844662 -26434892 - MER70A LTR ERVL -208 264 12 234 182 26 13 chr6 162844933 162845010 -26434544 + CT-rich Low_complexity Low_complexity 3 80 0 239 269 161 21 chr6 162845807 162845900 -26433654 + MER5A DNA MER1_type 1 106 -83 8079 171 90 20 chr6 162846205 162847844 -26431710 - MER52A LTR ERV1 0 1755 3 327 277 120 33 chr6 162848076 162848260 -26431294 + L2 LINE L2 2646 2845 -469 326 286 22 0 chr6 162848239 162848330 -26431224 + L2 LINE L2 3180 3272 0 * 1358 95 33 47 chr6 162848763 162848975 -26430579 + AluSg/x SINE Alu 80 319 0 280 0 0 0 chr6 162848975 162849006 -26430548 + (CAAAA)n Simple_repeat Simple_repeat 5 140 0 2282 110 0 0 chr6 162849809 162850109 -26429445 - AluSx SINE Alu -12 300 1 2286 50 0 7 chr6 162851315 162851594 -26427960 + AluY SINE Alu 18 294 -17 7822 16 0 0 chr6 162851817 162852863 -26426691 - L1PA3 LINE L1 -3 6152 5109 3189 264 110 25 chr6 162853817 162855054 -26424500 - L1MCc LINE L1 -5065 1358 17 1078 130 0 0 chr6 162855257 162855411 -26424143 - AluSg/x SINE Alu -24 288 135 2313 113 0 0 chr6 162856505 162856806 -26422748 - AluSx SINE Alu -11 301 1 252 316 40 88 chr6 162857424 162857696 -26421858 - MIR SINE MIR -3 259 1 455 352 39 13 chr6 162857729 162857962 -26421592 + MIR SINE MIR 9 247 -15 548 342 109 63 chr6 162858023 162858675 -26420879 + L2 LINE L2 2594 3269 -3 1217 210 103 62 chr6 162858969 162859261 -26420293 + L1MC5 LINE L1 6957 7235 -726 1735 175 29 0 chr6 162859261 162859562 -26419992 + AluSx SINE Alu 1 309 0 1217 210 103 62 chr6 162859562 162859819 -26419735 + L1MC5 LINE L1 7235 7531 -430 1908 159 42 24 chr6 162860060 162860443 -26419111 - MLT1B LTR MaLR 0 390 1 1873 256 230 33 chr6 162860529 162860925 -26418629 - L2 LINE L2 0 3313 2997 2306 101 34 0 chr6 162860925 162861223 -26418331 + AluSx SINE Alu 5 312 0 1873 256 230 33 chr6 162861223 162862078 -26417476 - L2 LINE L2 -316 2997 1809 802 261 65 17 chr6 162862105 162862335 -26417219 - MIR SINE MIR 0 262 22 339 130 0 0 chr6 162862802 162862856 -26416698 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 2508 65 10 0 chr6 162865552 162865860 -26413694 + AluY SINE Alu 1 311 0 218 195 24 0 chr6 162865909 162865950 -26413604 + L2 LINE L2 3229 3270 -2 412 262 99 47 chr6 162866988 162867179 -26412375 + MIR SINE MIR 30 230 -32 846 265 36 9 chr6 162867179 162867398 -26412156 + MIR SINE MIR 17 241 -21 257 170 75 21 chr6 162868183 162868277 -26411277 + (TA)n Simple_repeat Simple_repeat 1 99 0 252 0 0 0 chr6 162868790 162868818 -26410736 + (T)n Simple_repeat Simple_repeat 1 28 0 3073 141 23 9 chr6 162869134 162869666 -26409888 - LTR38 LTR ERV1 -17 539 1 363 206 0 20 chr6 162869897 162869999 -26409555 - Charlie8 DNA MER1_type -2246 171 72 1854 160 3 10 chr6 162870430 162870730 -26408824 + AluJb SINE Alu 1 298 -14 226 26 51 26 chr6 162870912 162870951 -26408603 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 2069 129 0 0 chr6 162870955 162871234 -26408320 - AluSg SINE Alu -31 279 1 217 261 0 15 chr6 162871413 162871478 -26408076 + MER5B DNA MER1_type 94 157 -21 23 54 0 0 chr6 162871847 162871884 -26407670 + AT_rich Low_complexity Low_complexity 1 37 0 275 65 22 0 chr6 162873353 162873399 -26406155 + (TG)n Simple_repeat Simple_repeat 1 47 0 2328 82 14 0 chr6 162874341 162874633 -26404921 + AluY SINE Alu 1 296 -15 219 347 0 27 chr6 162875128 162875203 -26404351 - MIR SINE MIR -147 115 43 690 221 108 9 chr6 162875272 162875458 -26404096 + MIR SINE MIR 48 249 -13 718 242 50 78 chr6 162875620 162875731 -26403823 + L1MC5 LINE L1 7420 7533 -428 2278 95 0 0 chr6 162875731 162876049 -26403505 + AluSx SINE Alu 1 318 0 718 242 50 78 chr6 162876049 162876460 -26403094 + L1MC5 LINE L1 7533 7929 -32 381 190 51 0 chr6 162876533 162876612 -26402942 - MIR SINE MIR -51 211 129 538 216 0 0 chr6 162876882 162876993 -26402561 - AluJb SINE Alu 0 312 202 1170 134 0 0 chr6 162876993 162877157 -26402397 - AluSx SINE Alu -148 164 1 419 345 162 24 chr6 162877731 162878070 -26401484 + L3 LINE CR1 69 454 -1123 213 292 247 11 chr6 162878164 162878342 -26401212 + L3 LINE CR1 1084 1303 -274 1279 152 19 14 chr6 162878635 162878845 -26400709 - AluSg/x SINE Alu -18 292 82 794 281 31 5 chr6 162879404 162879628 -26399926 + MIR SINE MIR 32 261 -1 218 267 33 0 chr6 162879756 162879816 -26399738 + GA-rich Low_complexity Low_complexity 1 62 0 2234 130 0 0 chr6 162880273 162880580 -26398974 - AluSg SINE Alu -3 307 1 1925 139 13 0 chr6 162881755 162882058 -26397496 + AluSx SINE Alu 1 307 -5 288 238 143 38 chr6 162882065 162882170 -26397384 - MER5A DNA MER1_type -58 131 16 1053 266 102 50 chr6 162882175 162882596 -26396958 + L2 LINE L2 2871 3313 0 6795 123 12 13 chr6 162884528 162886486 -26393068 - L1MA1 LINE L1 -2 6300 4337 238 326 67 0 chr6 162887728 162887817 -26391737 + MIR3 SINE MIR 92 186 -22 208 355 57 53 chr6 162889681 162889926 -26389628 + L2 LINE L2 2616 2861 -453 221 156 52 0 chr6 162890651 162890728 -26388826 + (TA)n Simple_repeat Simple_repeat 1 81 0 23 33 0 0 chr6 162892640 162892670 -26386884 + AT_rich Low_complexity Low_complexity 1 30 0 2183 122 3 0 chr6 162892825 162893128 -26386426 - AluSx SINE Alu -8 304 1 2093 120 24 0 chr6 162893323 162893614 -26385940 - AluSx SINE Alu -14 298 1 353 320 100 27 chr6 162893737 162893887 -26385667 - MIR3 SINE MIR -33 175 15 383 136 18 109 chr6 162894173 162894268 -26385286 - MER96B DNA MER1_type? -187 230 145 2301 97 0 13 chr6 162894268 162894577 -26384977 - AluSg SINE Alu -5 305 1 383 136 18 109 chr6 162894577 162894591 -26384963 - MER96B DNA MER1_type? -272 145 131 381 160 170 0 chr6 162894595 162894689 -26384865 - L1MC3 LINE L1 -167 7618 7509 344 181 181 43 chr6 162894697 162894712 -26384842 + MER96B DNA MER1_type? 282 294 -123 2289 51 0 7 chr6 162894712 162894986 -26384568 - AluY SINE Alu -28 283 12 344 181 181 43 chr6 162894986 162895086 -26384468 + MER96B DNA MER1_type? 294 413 -4 283 327 59 40 chr6 162896515 162896717 -26382837 + HAL1 LINE L1 1 206 -2301 1179 265 126 39 chr6 162897055 162898256 -26381298 + HAL1 LINE L1 917 2221 -286 586 248 165 43 chr6 162898300 162898554 -26381000 - LTR16A LTR ERVL -6 444 160 1464 178 72 33 chr6 162898555 162898887 -26380667 + MLT1A2 LTR MaLR 1 345 -29 482 261 92 0 chr6 162898985 162899180 -26380374 + HAL1 LINE L1 2293 2505 -2 2387 109 0 0 chr6 162899331 162899643 -26379911 + AluSx SINE Alu 1 312 0 247 191 0 0 chr6 162899698 162899740 -26379814 - MIR SINE MIR -17 245 204 746 133 60 0 chr6 162899761 162899912 -26379642 - L1MA7 LINE L1 0 6291 6132 2198 91 11 0 chr6 162899916 162900203 -26379351 - AluSx SINE Alu -19 293 4 251 331 31 16 chr6 162900216 162900343 -26379211 + MIR SINE MIR 134 262 0 22 0 0 0 chr6 162901362 162901384 -26378170 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 162901822 162901844 -26377710 + AT_rich Low_complexity Low_complexity 1 22 0 211 214 0 0 chr6 162903036 162903078 -26376476 + L2 LINE L2 3267 3308 -5 1923 150 2 89 chr6 162903566 162903993 -26375561 - MLT1B LTR MaLR 0 390 1 222 312 37 18 chr6 162904400 162904509 -26375045 + MIR SINE MIR 38 148 -60 1403 209 15 32 chr6 162904539 162904878 -26374676 - MLT1A1 LTR MaLR 0 365 33 898 195 13 48 chr6 162904885 162904957 -26374597 - MLT1A1 LTR MaLR -142 223 150 1951 153 3 7 chr6 162904957 162905251 -26374303 - AluJb SINE Alu -19 293 1 898 195 13 48 chr6 162905251 162905409 -26374145 - MLT1A1 LTR MaLR -215 150 1 1289 146 5 0 chr6 162905471 162905677 -26373877 + MER2 DNA MER2_type 1 207 -138 24 67 0 0 chr6 162905802 162905847 -26373707 + AT_rich Low_complexity Low_complexity 1 45 0 369 200 0 0 chr6 162905847 162905912 -26373642 + MER2 DNA MER2_type 280 344 -1 842 229 20 71 chr6 162906303 162906556 -26372998 + MIR SINE MIR 21 260 -2 567 302 65 9 chr6 162906882 162907097 -26372457 + MIR SINE MIR 31 257 -5 399 237 138 0 chr6 162908458 162908610 -26370944 + L2 LINE L2 1920 2092 -1222 2783 170 122 11 chr6 162908624 162909288 -26370266 - L1MB4 LINE L1 -9 6171 5434 1222 265 52 45 chr6 162909288 162909733 -26369821 + L2 LINE L2 2087 2534 -780 250 293 254 5 chr6 162909752 162909957 -26369597 + L2 LINE L2 3012 3267 -46 218 205 0 0 chr6 162910249 162910288 -26369266 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 1165 91 0 0 chr6 162910607 162910750 -26368804 - AluSg/x SINE Alu -14 298 156 2163 121 0 23 chr6 162911311 162911617 -26367937 - AluSx SINE Alu -13 299 1 24 53 0 0 chr6 162911825 162911863 -26367691 + AT_rich Low_complexity Low_complexity 1 38 0 1220 154 41 55 chr6 162912265 162912485 -26367069 - AluJb SINE Alu -12 300 84 603 242 33 0 chr6 162912667 162912828 -26366726 + MIR SINE MIR 51 214 -48 360 0 0 0 chr6 162912882 162912922 -26366632 + (CA)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr6 162914372 162914400 -26365154 + AT_rich Low_complexity Low_complexity 1 28 0 1915 143 0 17 chr6 162914521 162914808 -26364746 - AluSx SINE Alu -30 282 1 21 0 0 0 chr6 162916766 162916787 -26362767 + AT_rich Low_complexity Low_complexity 1 21 0 2233 74 7 3 chr6 162919912 162920224 -26359330 + AluY SINE Alu 1 313 0 573 253 0 38 chr6 162920231 162920389 -26359165 + FRAM SINE Alu 2 153 -13 369 0 0 0 chr6 162920389 162920430 -26359124 + (CA)n Simple_repeat Simple_repeat 2 42 0 1551 189 67 18 chr6 162920580 162920966 -26358588 - L1MC3 LINE L1 -6 7779 7375 * 2003 195 60 0 chr6 162920958 162921393 -26358161 + L1MC3 LINE L1 5404 5864 -1921 584 227 33 0 chr6 162921395 162921545 -26358009 + Ricksha_a DNA DNA 2 156 -1025 * 4799 138 88 29 chr6 162921537 162921842 -26357712 + Ricksha_b DNA DNA 239 525 -2329 901 17 17 0 chr6 162921842 162921957 -26357597 + (TC)n Simple_repeat Simple_repeat 2 118 0 4799 138 88 29 chr6 162921957 162922122 -26357432 + Ricksha_b DNA DNA 525 679 -2175 2060 105 25 7 chr6 162922122 162922423 -26357131 + AluSx SINE Alu 1 306 0 4799 138 88 29 chr6 162922423 162922903 -26356651 + Ricksha_b DNA DNA 679 1247 -7 6325 166 105 69 chr6 162922909 162924110 -26355444 + L1MC3 LINE L1 5856 7219 -566 236 299 35 0 chr6 162924110 162924197 -26355357 + MLT1F1 LTR MaLR 45 134 -433 6325 166 105 69 chr6 162924197 162924610 -26354944 + L1MC3 LINE L1 7219 7616 -169 740 207 103 10 chr6 162924837 162925040 -26354514 - L1M4 LINE L1 -1293 4853 4632 248 253 22 33 chr6 162925180 162925271 -26354283 + MARNA DNA Mariner 435 524 -62 195 320 72 0 chr6 162925336 162925433 -26354121 + MIR SINE MIR 153 256 -6 36861 34 22 1 chr6 162926174 162931733 -26347821 - L1PA3 LINE L1 0 6155 476 22 35 0 0 chr6 162932013 162932042 -26347512 + AT_rich Low_complexity Low_complexity 1 29 0 24 85 0 0 chr6 162932077 162932136 -26347418 + AT_rich Low_complexity Low_complexity 1 59 0 195 274 113 113 chr6 162932389 162932619 -26346935 - L2 LINE L2 -3 3269 3040 301 217 14 0 chr6 162932702 162932771 -26346783 + L1ME2 LINE L1 118 187 -6209 2910 237 62 17 chr6 162932847 162934163 -26345391 + L1ME2 LINE L1 4838 6231 -2 459 0 0 0 chr6 162934242 162934293 -26345261 + (TG)n Simple_repeat Simple_repeat 2 52 0 267 372 112 0 chr6 162934389 162934631 -26344923 + L2 LINE L2 2489 2757 -557 314 403 70 0 chr6 162934685 162934886 -26344668 - MIR SINE MIR -25 237 23 202 197 33 98 chr6 162935168 162935229 -26344325 + MIR SINE MIR 84 140 -68 2386 70 6 13 chr6 162935483 162935796 -26343758 + AluY SINE Alu 1 311 0 189 244 24 0 chr6 162935846 162935887 -26343667 + L2 LINE L2 3229 3270 -2 396 267 99 47 chr6 162936925 162937116 -26342438 + MIR SINE MIR 30 230 -32 593 296 6 11 chr6 162937125 162937301 -26342253 + MIR SINE MIR 33 207 -55 476 213 63 10 chr6 162937575 162937740 -26341814 + MLT1F LTR MaLR 364 590 0 1417 170 34 112 chr6 162938937 162939355 -26340199 - MLT1B LTR MaLR -5 385 1 2772 272 133 23 chr6 162939594 162940658 -26338896 + L2 LINE L2 57 1238 -2076 960 170 6 12 chr6 162940914 162941079 -26338475 + FRAM SINE Alu 2 165 -1 2256 196 24 74 chr6 162941711 162942294 -26337260 - MLT2B3 LTR ERVL 0 554 1 507 313 71 31 chr6 162942808 162943288 -26336266 - L1MEc LINE L1 -2226 4314 3816 21 0 0 0 chr6 162943369 162943390 -26336164 + AT_rich Low_complexity Low_complexity 1 21 0 533 278 104 89 chr6 162943618 162944090 -26335464 - L1MEc LINE L1 -3888 2833 2355 364 296 169 17 chr6 162944371 162944790 -26334764 - L1MEc LINE L1 -4570 1999 1488 734 312 163 62 chr6 162945216 162946268 -26333286 - L1MEc LINE L1 -4959 1571 414 21 36 0 0 chr6 162946639 162946667 -26332887 + AT_rich Low_complexity Low_complexity 1 28 0 192 359 39 39 chr6 162947780 162947908 -26331646 - MIR SINE MIR -62 146 19 425 248 138 43 chr6 162948736 162948990 -26330564 - MLT1G1 LTR MaLR -317 278 1 269 251 87 72 chr6 162948995 162949202 -26330352 - MLT1G1-int LTR MaLR -5 1366 1157 3035 83 32 30 chr6 162949202 162949671 -26329883 - MER11B LTR ERVK -766 470 1 1363 144 176 14 chr6 162950357 162950702 -26328852 + MSTA LTR MaLR 6 401 -27 18429 134 19 12 chr6 162950741 162953366 -26326188 - L1PA11 LINE L1 -5 6169 3564 1996 123 108 9 chr6 162953366 162953707 -26325847 - THE1C LTR MaLR 0 375 1 8175 172 56 45 chr6 162953707 162955270 -26324284 - THE1C-int LTR MaLR 0 1580 1 2323 104 59 8 chr6 162955270 162955627 -26323927 - THE1C LTR MaLR 0 375 1 18429 134 19 12 chr6 162955627 162956133 -26323421 - L1PA11 LINE L1 -2610 3564 3063 2390 80 6 16 chr6 162956133 162956447 -26323107 - AluSq SINE Alu -2 311 1 18429 134 19 12 chr6 162956447 162957508 -26322046 - L1PA11 LINE L1 -3111 3063 1949 183 42 0 0 chr6 162959824 162959848 -26319706 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2130 69 7 0 chr6 162962261 162962536 -26317018 - AluY SINE Alu 0 311 35 23 33 0 0 chr6 162962730 162962760 -26316794 + AT_rich Low_complexity Low_complexity 1 30 0 267 250 23 0 chr6 162962912 162963000 -26316554 - MER103 DNA DNA -12 154 65 2041 122 3 13 chr6 162963593 162963904 -26315650 - AluSx SINE Alu -4 308 1 21 36 0 0 chr6 162964070 162964098 -26315456 + AT_rich Low_complexity Low_complexity 1 28 0 214 259 74 0 chr6 162964494 162964548 -26315006 - MIR3 SINE MIR 0 208 151 2555 154 93 38 chr6 162965417 162965733 -26313821 + MER7C DNA MER2_type 3 365 -2663 2418 38 0 72 chr6 162965733 162966052 -26313502 - AluY SINE Alu -15 296 1 2555 154 93 38 chr6 162966052 162966293 -26313261 + MER7C DNA MER2_type 365 591 -11 241 180 0 0 chr6 162966528 162966578 -26312976 - MLT1E2 LTR MaLR -498 128 79 246 192 7 60 chr6 162967913 162968064 -26311490 + GA-rich Low_complexity Low_complexity 3 145 0 542 285 131 48 chr6 162968811 162968996 -26310558 - L1M4 LINE L1 -1068 5078 4910 5463 129 10 21 chr6 162968996 162969311 -26310243 + L1PA16 LINE L1 4821 5138 -1028 2314 113 0 0 chr6 162969311 162969612 -26309942 + AluSx SINE Alu 1 301 -11 5463 129 10 21 chr6 162969612 162970647 -26308907 + L1PA16 LINE L1 5138 6156 -10 542 285 131 48 chr6 162970647 162971714 -26307840 - L1M4 LINE L1 -1236 4910 3722 1466 204 65 139 chr6 162972581 162973235 -26306319 + L1MC4a LINE L1 5879 6445 -1363 1852 189 0 0 chr6 162973235 162973531 -26306023 + AluJb SINE Alu 1 296 -16 1466 204 65 139 chr6 162973531 162973804 -26305750 + L1MC4a LINE L1 6445 6737 -1071 815 213 119 34 chr6 162973850 162974193 -26305361 - MER57A LTR ERV1 -4 399 67 2400 85 7 0 chr6 162974201 162974508 -26305046 - AluSg SINE Alu -1 309 1 767 273 108 72 chr6 162974641 162975264 -26304290 - L1MEd LINE L1 -4922 1494 834 21 36 0 0 chr6 162975683 162975711 -26303843 + AT_rich Low_complexity Low_complexity 1 28 0 459 327 33 11 chr6 162976186 162976458 -26303096 - L1ME LINE L1 -297 5824 5547 2009 95 23 43 chr6 162977840 162977895 -26301659 + L1PB1 LINE L1 5811 5866 -285 2258 90 0 0 chr6 162977895 162978194 -26301360 - AluSg SINE Alu 0 299 1 2009 95 23 43 chr6 162978194 162978485 -26301069 + L1PB1 LINE L1 5866 6151 0 284 134 0 110 chr6 162978546 162978628 -26300926 - L1PA16 LINE L1 -2 6164 6092 339 342 50 25 chr6 162978755 162978916 -26300638 - MER5A DNA MER1_type -23 166 2 24 0 0 0 chr6 162979000 162979024 -26300530 + AT_rich Low_complexity Low_complexity 1 24 0 233 306 134 45 chr6 162979469 162979737 -26299817 - L3b LINE CR1 -121 1462 1171 288 208 97 14 chr6 162979935 162980007 -26299547 + MIR3 SINE MIR 84 161 -47 329 254 23 39 chr6 162980198 162980272 -26299282 + GA-rich Low_complexity Low_complexity 1 74 -54 3522 122 41 4 chr6 162980272 162980780 -26298774 - MER1A DNA MER1_type 0 527 1 329 254 23 39 chr6 162980780 162980835 -26298719 + GA-rich Low_complexity Low_complexity 74 128 0 2472 84 0 3 chr6 162980835 162981144 -26298410 + AluSc SINE Alu 1 308 -1 2296 101 10 3 chr6 162982527 162982834 -26296720 + AluSc SINE Alu 1 309 0 296 295 21 0 chr6 162983916 162984011 -26295543 + MIR3 SINE MIR 108 204 -4 1734 167 52 27 chr6 162984543 162984909 -26294645 + THE1C LTR MaLR 1 375 0 1530 117 8 4 chr6 162984912 162985159 -26294395 + THE1C-int LTR MaLR 3 250 -1330 5046 125 5 79 chr6 162985162 162986124 -26293430 + THE1C-int LTR MaLR 690 1580 0 543 156 82 25 chr6 162986124 162986246 -26293308 + THE1C LTR MaLR 1 129 -246 9684 18 0 0 chr6 162986916 162988806 -26290748 - L1PA3 LINE L1 -9 6146 4256 24 53 0 0 chr6 162989222 162989260 -26290294 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr6 162989465 162989487 -26290067 + AT_rich Low_complexity Low_complexity 1 22 0 320 244 0 0 chr6 162991630 162991708 -26287846 - L1M4 LINE L1 -5110 1432 1355 188 206 0 0 chr6 162994409 162994443 -26285111 - MIR SINE MIR -91 117 84 743 224 0 6 chr6 162994615 162994776 -26284778 - MER69A DNA AcHobo -10 167 8 228 355 73 36 chr6 162995015 162995125 -26284429 - L2 LINE L2 -79 3193 3080 2396 92 7 0 chr6 162995494 162995799 -26283755 - AluSq SINE Alu -5 308 2 3604 174 21 6 chr6 162995914 162996594 -26282960 - L1MB5 LINE L1 -1 6173 5484 4667 47 3 5 chr6 162996766 162997344 -26282210 + L1PA7 LINE L1 5577 6153 -1 2074 111 7 10 chr6 162997931 162998237 -26281317 - AluSx SINE Alu -7 305 1 1050 282 171 18 chr6 162998573 162998954 -26280600 - L3 LINE CR1 -106 1471 989 2289 115 0 0 chr6 162998954 162999259 -26280295 - AluSq SINE Alu -8 305 1 1050 282 171 18 chr6 162999259 162999392 -26280162 - L3 LINE CR1 -588 989 878 228 289 49 73 chr6 162999798 162999993 -26279561 - MIR SINE MIR -50 212 26 5902 57 21 0 chr6 163000352 163001142 -26278412 - L1PA7 LINE L1 -4 6150 5344 1717 148 60 9 chr6 163002953 163003270 -26276284 + MLT1A1 LTR MaLR 31 363 -2 263 356 0 0 chr6 163005277 163005364 -26274190 - MIR3 SINE MIR -14 194 108 501 297 38 38 chr6 163005397 163005606 -26273948 + MIR SINE MIR 23 231 -31 512 265 15 0 chr6 163007815 163007947 -26271607 + MER63 DNA MER1_type 1 760 -76 216 189 0 0 chr6 163008277 163008314 -26271240 + MIR SINE MIR 117 153 -109 344 261 121 8 chr6 163010182 163010393 -26269161 - MIR SINE MIR -1 261 20 2418 99 11 8 chr6 163010914 163011268 -26268286 + THE1A LTR MaLR 1 355 0 939 188 94 0 chr6 163011467 163011659 -26267895 - MER58B DNA MER1_type 0 341 132 243 198 10 20 chr6 163011799 163011900 -26267654 + (CA)n Simple_repeat Simple_repeat 1 100 0 335 347 20 0 chr6 163011959 163012109 -26267445 - MIR SINE MIR 0 262 110 244 298 111 47 chr6 163012305 163012476 -26267078 + L2 LINE L2 2568 2749 -565 26 0 0 0 chr6 163013656 163013682 -26265872 + AT_rich Low_complexity Low_complexity 1 26 0 327 24 0 0 chr6 163013916 163013957 -26265597 + MADE1 DNA Mariner 38 78 -2 282 56 0 0 chr6 163014148 163014184 -26265370 + (GA)n Simple_repeat Simple_repeat 1 36 0 183 42 0 0 chr6 163016123 163016147 -26263407 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 308 354 8 15 chr6 163016870 163017000 -26262554 + MER5A DNA MER1_type 61 189 0 349 253 142 86 chr6 163017227 163017656 -26261898 + L2 LINE L2 2766 3221 -92 243 88 0 0 chr6 163017896 163017930 -26261624 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 311 291 25 13 chr6 163019276 163019355 -26260199 + MIR3 SINE MIR 12 91 -117 1592 170 151 21 chr6 163019740 163020117 -26259437 - MSTA LTR MaLR -2 426 1 465 237 0 25 chr6 163020117 163020235 -26259319 - MER94 DNA DNA -16 118 4 39 22 0 0 chr6 163021074 163021120 -26258434 + AT_rich Low_complexity Low_complexity 1 46 0 1132 222 27 41 chr6 163021251 163021544 -26258010 - MLT1E2 LTR MaLR -24 602 314 1232 201 12 109 chr6 163021566 163021812 -26257742 + MLT2D LTR ERVL 1 194 -220 7031 66 6 1 chr6 163021812 163022913 -26256641 + L1PA8 LINE L1 5068 6172 0 1232 201 12 109 chr6 163022913 163023069 -26256485 + MLT2D LTR ERVL 194 364 -50 881 251 48 16 chr6 163023047 163023298 -26256256 - MLT1E2 LTR MaLR -318 308 50 * 873 138 27 53 chr6 163023429 163023617 -26255937 + THE1B LTR MaLR 180 362 -2 624 235 144 0 chr6 163027236 163027389 -26252165 + MER5B DNA MER1_type 2 176 -2 299 299 180 5 chr6 163028051 163028262 -26251292 + LTR16A1 LTR ERVL 159 406 -51 2740 96 0 3 chr6 163028408 163028773 -26250781 - THE1B LTR MaLR 0 364 1 322 343 45 8 chr6 163028836 163028970 -26250584 - MIR3 SINE MIR -21 187 49 221 167 0 24 chr6 163029272 163029314 -26250240 + L2 LINE L2 3227 3267 -5 267 54 0 0 chr6 163029456 163029493 -26250061 + (TG)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr6 163029839 163029861 -26249693 + AT_rich Low_complexity Low_complexity 1 22 0 215 281 24 12 chr6 163030290 163030372 -26249182 - MIR SINE MIR -6 256 174 316 306 45 15 chr6 163031205 163031339 -26248215 - MIR SINE MIR -10 252 115 1081 269 81 18 chr6 163032070 163032562 -26246992 + HsTC2 DNA Tc2 34 556 -1342 350 243 90 28 chr6 163032562 163032706 -26246848 - MLT1G1 LTR MaLR 0 542 390 664 270 64 25 chr6 163032786 163033128 -26246426 - MLT1G1 LTR MaLR -284 306 2 796 239 133 16 chr6 163033128 163033383 -26246171 + HsTC2 DNA Tc2 553 837 -1061 551 231 35 35 chr6 163033391 163033564 -26245990 + HsTC2 DNA Tc2 1728 1900 0 680 236 21 0 chr6 163033932 163034076 -26245478 - MER41D LTR ERV1 -18 539 393 2490 149 17 48 chr6 163034081 163034289 -26245265 - MER41D LTR ERV1 -90 467 254 1987 92 11 11 chr6 163034289 163034613 -26244941 - AluSx SINE Alu 0 325 2 2490 149 17 48 chr6 163034613 163034885 -26244669 - MER41D LTR ERV1 -303 254 1 203 261 0 0 chr6 163035143 163035189 -26244365 - L2 LINE L2 -19 3253 3208 373 239 54 54 chr6 163035501 163035631 -26243923 - MIR SINE MIR -50 212 83 410 307 42 5 chr6 163035783 163035972 -26243582 - L1ME1 LINE L1 -6 6160 5965 283 109 62 0 chr6 163035975 163036039 -26243515 + (CAGAGA)n Simple_repeat Simple_repeat 2 69 0 877 178 44 22 chr6 163036072 163036297 -26243257 - L1ME1 LINE L1 -272 5894 5665 662 232 5 38 chr6 163036301 163036486 -26243068 - L1ME1 LINE L1 -657 5509 5331 1530 143 63 52 chr6 163036486 163036773 -26242781 - AluSx SINE Alu -22 290 1 34 72 0 0 chr6 163036857 163036926 -26242628 + AT_rich Low_complexity Low_complexity 1 69 0 337 263 42 0 chr6 163038232 163038327 -26241227 - MIR3 SINE MIR -42 166 68 800 224 44 103 chr6 163038478 163038817 -26240737 - L2 LINE L2 -3 3310 2992 207 304 18 0 chr6 163039678 163039734 -26239820 - L2 LINE L2 -1 3271 3215 2312 99 0 0 chr6 163039812 163040106 -26239448 + AluSq SINE Alu 2 295 -18 1571 202 47 44 chr6 163040501 163040863 -26238691 + L1MD1 LINE L1 42 404 -6160 627 219 104 73 chr6 163040892 163041097 -26238457 + L1MD1 LINE L1 563 735 -5310 * 3899 235 62 45 chr6 163041093 163041655 -26237899 + L1MD1 LINE L1 2892 3443 -3121 8887 104 6 20 chr6 163041655 163042975 -26236579 + HSMAR2 DNA Mariner 1 1301 -1 3899 235 62 45 chr6 163042975 163043216 -26236338 + L1MD1 LINE L1 3443 3678 -2886 1935 170 10 77 chr6 163043216 163043634 -26235920 - MLT1B LTR MaLR 0 390 1 3899 235 62 45 chr6 163043634 163043768 -26235786 + L1MD1 LINE L1 3678 3808 -2756 2383 100 3 3 chr6 163043768 163044077 -26235477 + AluSq SINE Alu 1 309 -4 3899 235 62 45 chr6 163044077 163044739 -26234815 + L1MD1 LINE L1 3808 4520 -2044 4324 186 78 9 chr6 163044740 163046098 -26233456 + L1MD1 LINE L1 5216 6660 0 381 277 43 0 chr6 163046552 163046646 -26232908 - L2 LINE L2 0 3313 3216 2115 138 39 17 chr6 163046905 163047261 -26232293 - THE1B LTR MaLR 0 364 1 396 0 0 0 chr6 163049133 163049177 -26230377 + (CA)n Simple_repeat Simple_repeat 1 44 0 216 0 0 0 chr6 163049544 163049568 -26229986 + (A)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr6 163051050 163051071 -26228483 + AT_rich Low_complexity Low_complexity 1 21 0 723 295 85 25 chr6 163051333 163051770 -26227784 + Tigger8 DNA MER2_type 10 472 -194 200 297 0 0 chr6 163051804 163051868 -26227686 + (TA)n Simple_repeat Simple_repeat 1 64 0 227 252 121 44 chr6 163052786 163052890 -26226664 - MIR SINE MIR -72 136 28 326 302 141 7 chr6 163053217 163053366 -26226188 + MIR SINE MIR 20 188 -74 1591 164 0 29 chr6 163053383 163053657 -26225897 + AluJb SINE Alu 1 266 -46 1655 131 244 12 chr6 163054526 163054870 -26224684 - MSTA LTR MaLR -2 426 3 188 264 0 19 chr6 163054934 163054987 -26224567 - MER5B DNA MER1_type -109 69 18 437 267 139 5 chr6 163055201 163055388 -26224166 - L3 LINE CR1 -763 814 603 9286 19 1 0 chr6 163106040 163107625 -26171929 - L1PA4 LINE L1 -312 5843 4256 24 53 0 0 chr6 163108041 163108079 -26171475 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr6 163108284 163108306 -26171248 + AT_rich Low_complexity Low_complexity 1 22 0 320 244 0 0 chr6 163110449 163110527 -26169027 - L1M4 LINE L1 -5110 1432 1355 188 206 0 0 chr6 163113229 163113263 -26166291 - MIR SINE MIR -91 117 84 743 224 0 6 chr6 163113435 163113596 -26165958 - MER69A DNA AcHobo -10 167 8 228 355 73 36 chr6 163113835 163113945 -26165609 - L2 LINE L2 -79 3193 3080 2080 109 13 16 chr6 163114314 163114617 -26164937 - AluSq SINE Alu -10 303 2 3604 174 21 6 chr6 163114732 163115412 -26164142 - L1MB5 LINE L1 -1 6173 5484 4667 47 3 5 chr6 163115584 163116162 -26163392 + L1PA7 LINE L1 5577 6153 -1 2074 111 7 10 chr6 163116749 163117055 -26162499 - AluSx SINE Alu -7 305 1 1050 282 171 18 chr6 163117392 163117773 -26161781 - L3 LINE CR1 -106 1471 989 2289 115 0 0 chr6 163117773 163118078 -26161476 - AluSq SINE Alu -8 305 1 1050 282 171 18 chr6 163118078 163118211 -26161343 - L3 LINE CR1 -588 989 878 228 289 49 73 chr6 163118617 163118812 -26160742 - MIR SINE MIR -50 212 26 5902 57 21 0 chr6 163119171 163119961 -26159593 - L1PA7 LINE L1 -4 6150 5344 1717 148 60 9 chr6 163121772 163122089 -26157465 + MLT1A1 LTR MaLR 31 363 -2 263 356 0 0 chr6 163124096 163124183 -26155371 - MIR3 SINE MIR -14 194 108 501 297 38 38 chr6 163124216 163124425 -26155129 + MIR SINE MIR 23 231 -31 512 265 15 0 chr6 163126634 163126766 -26152788 + MER63 DNA MER1_type 1 760 -302 216 189 0 0 chr6 163127096 163127133 -26152421 + MIR SINE MIR 117 153 -109 344 261 121 8 chr6 163129000 163129211 -26150343 - MIR SINE MIR -1 261 20 2418 99 11 8 chr6 163129732 163130086 -26149468 + THE1A LTR MaLR 1 355 0 939 188 94 0 chr6 163130285 163130477 -26149077 - MER58B DNA MER1_type 0 341 132 243 198 10 20 chr6 163130617 163130718 -26148836 + (CA)n Simple_repeat Simple_repeat 1 100 0 335 347 20 0 chr6 163130777 163130927 -26148627 - MIR SINE MIR 0 262 110 244 298 111 47 chr6 163131123 163131294 -26148260 + L2 LINE L2 2568 2749 -565 26 0 0 0 chr6 163132474 163132500 -26147054 + AT_rich Low_complexity Low_complexity 1 26 0 327 24 0 0 chr6 163132734 163132775 -26146779 + MADE1 DNA Mariner 38 78 -2 282 56 0 0 chr6 163132966 163133002 -26146552 + (GA)n Simple_repeat Simple_repeat 1 36 0 183 42 0 0 chr6 163134942 163134966 -26144588 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 308 354 8 15 chr6 163135689 163135819 -26143735 + MER5A DNA MER1_type 61 189 0 349 253 142 86 chr6 163136046 163136475 -26143079 + L2 LINE L2 2766 3221 -92 243 88 0 0 chr6 163136715 163136749 -26142805 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 296 282 39 13 chr6 163138094 163138172 -26141382 + MIR3 SINE MIR 12 91 -117 1592 170 151 21 chr6 163138557 163138934 -26140620 - MSTA LTR MaLR -2 426 1 465 237 0 25 chr6 163138934 163139052 -26140502 - MER94 DNA DNA -16 118 4 39 22 0 0 chr6 163139891 163139937 -26139617 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr6 163141304 163141334 -26138220 + AT_rich Low_complexity Low_complexity 1 30 0 1584 188 29 4 chr6 163141480 163141757 -26137797 - AluJo SINE Alu -28 284 1 731 219 56 22 chr6 163141777 163141995 -26137559 - MIR SINE MIR -25 237 13 2490 72 0 0 chr6 163142455 163142748 -26136806 + AluSc SINE Alu 1 293 -16 24 32 0 0 chr6 163142994 163143025 -26136529 + AT_rich Low_complexity Low_complexity 1 31 0 3365 113 42 6 chr6 163144901 163145406 -26134148 + MER1A DNA MER1_type 1 523 -4 573 234 0 0 chr6 163145464 163145575 -26133979 + MER45A DNA AcHobo 48 158 -20 355 307 79 8 chr6 163145742 163145869 -26133685 + MER5A DNA MER1_type 54 189 0 398 336 30 60 chr6 163146310 163146578 -26132976 + MIR SINE MIR 1 260 -2 1464 177 104 3 chr6 163146866 163147182 -26132372 + MLT2C1 LTR ERVL 1 348 -49 342 0 0 0 chr6 163147203 163147241 -26132313 + (CA)n Simple_repeat Simple_repeat 2 39 0 390 21 0 0 chr6 163147241 163147288 -26132266 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 680 234 32 13 chr6 163147288 163147446 -26132108 - FRAM SINE Alu -15 161 1 24 53 0 0 chr6 163147447 163147485 -26132069 + AT_rich Low_complexity Low_complexity 1 38 0 1302 161 23 118 chr6 163147485 163147834 -26131720 - MLT1A1 LTR MaLR -12 353 38 332 283 0 11 chr6 163147918 163148010 -26131544 + L1MC4 LINE L1 6615 6705 -1337 204 176 12 24 chr6 163148019 163148104 -26131450 + (TA)n Simple_repeat Simple_repeat 1 84 0 1270 78 0 0 chr6 163148155 163148309 -26131245 - AluY SINE Alu -43 268 115 340 314 82 44 chr6 163149404 163149563 -26129991 - MIR SINE MIR -10 252 88 354 175 0 0 chr6 163149637 163149717 -26129837 + CT-rich Low_complexity Low_complexity 2 81 0 222 105 0 0 chr6 163149729 163149767 -26129787 + (CA)n Simple_repeat Simple_repeat 1 38 0 289 277 62 9 chr6 163151589 163151701 -26127853 - MIR SINE MIR -64 198 81 888 214 6 12 chr6 163151803 163151976 -26127578 + FAM SINE Alu 1 172 -3 22 35 0 0 chr6 163152633 163152662 -26126892 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr6 163153429 163153450 -26126104 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 27 0 0 0 chr6 163154063 163154090 -26125464 + AT_rich Low_complexity Low_complexity 1 27 0 608 189 0 47 chr6 163154537 163154664 -26124890 + FLAM_C SINE Alu 1 121 -22 274 314 113 13 chr6 163155244 163155483 -26124071 + L1 LINE L1 3529 3791 -2355 203 185 37 19 chr6 163155628 163155682 -26123872 + A-rich Low_complexity Low_complexity 1 55 0 1146 176 75 43 chr6 163155817 163156072 -26123482 + MLT1E LTR MaLR 10 272 -321 344 179 15 0 chr6 163156069 163156136 -26123418 + U4 snRNA snRNA 1 68 -77 * 1413 200 26 63 chr6 163156132 163156482 -26123072 + MLT1E LTR MaLR 257 593 0 2802 216 67 38 chr6 163156519 163157609 -26121945 - L1ME1 LINE L1 0 6235 5122 2248 252 43 36 chr6 163157606 163157960 -26121594 - L1ME1 LINE L1 -4606 1790 1440 * 2198 117 0 7 chr6 163157960 163158259 -26121295 + AluSq SINE Alu 1 297 -16 2248 252 43 36 chr6 163158259 163158962 -26120592 - L1ME1 LINE L1 -4956 1440 725 984 275 44 54 chr6 163158983 163159412 -26120142 - L1ME1 LINE L1 -5768 628 204 2200 129 0 10 chr6 163159704 163160014 -26119540 - AluSx SINE Alu -5 307 1 307 263 53 7 chr6 163160245 163160397 -26119157 + L1MC4a LINE L1 5724 5882 -1926 257 233 17 0 chr6 163161463 163161523 -26118031 + CT-rich Low_complexity Low_complexity 2 62 0 329 216 62 52 chr6 163161528 163161625 -26117929 - L2 LINE L2 -1 3312 3215 1981 135 42 3 chr6 163162286 163162574 -26116980 + AluSp SINE Alu 1 299 -14 622 243 43 0 chr6 163162630 163162770 -26116784 - MIR SINE MIR -108 154 9 496 308 84 29 chr6 163162903 163163176 -26116378 - L3 LINE CR1 -431 1146 859 484 187 148 53 chr6 163163188 163163397 -26116157 - L1ME4a LINE L1 -126 5995 5767 2371 107 0 0 chr6 163163467 163163776 -26115778 - AluSc SINE Alu 0 309 1 245 339 156 9 chr6 163164141 163164250 -26115304 - MIR SINE MIR -118 144 20 222 293 65 83 chr6 163165604 163165715 -26113839 - L2 LINE L2 -72 3200 3089 204 40 0 0 chr6 163165715 163165740 -26113814 + (CTGGGG)n Simple_repeat Simple_repeat 1 25 0 222 293 65 83 chr6 163165740 163165857 -26113697 - L2 LINE L2 -183 3089 2976 213 119 0 0 chr6 163166095 163166137 -26113417 + (A)n Simple_repeat Simple_repeat 1 42 0 1384 218 29 6 chr6 163166220 163166568 -26112986 + L1MB8 LINE L1 5823 6178 0 221 338 14 0 chr6 163166940 163167014 -26112540 + MIR SINE MIR 73 147 -115 2268 116 3 0 chr6 163167036 163167347 -26112207 + AluSx SINE Alu 1 312 0 523 144 0 21 chr6 163167449 163167546 -26112008 + AluY SINE Alu 202 296 -15 1609 175 32 9 chr6 163167547 163167862 -26111692 - MER7C DNA MER2_type -278 324 3 214 259 74 0 chr6 163168731 163168785 -26110769 + MIR3 SINE MIR 151 208 0 21 36 0 0 chr6 163169181 163169209 -26110345 + AT_rich Low_complexity Low_complexity 1 28 0 2041 122 3 13 chr6 163169375 163169686 -26109868 + AluSx SINE Alu 1 308 -4 267 250 23 0 chr6 163170279 163170367 -26109187 + MER103 DNA DNA 65 154 -12 23 33 0 0 chr6 163170519 163170549 -26109005 + AT_rich Low_complexity Low_complexity 1 30 0 2130 69 7 0 chr6 163170743 163171018 -26108536 + AluY SINE Alu 35 311 0 183 42 0 0 chr6 163173432 163173456 -26106098 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 266 346 39 23 chr6 163175774 163175904 -26103650 - L2 LINE L2 0 3313 3182 1246 190 11 25 chr6 163177231 163177505 -26102049 + MLT1C LTR MaLR 196 465 -2 277 208 0 78 chr6 163177584 163177617 -26101937 - LTR16B LTR ERVL 0 464 430 2099 104 81 26 chr6 163177617 163177962 -26101592 + THE1B LTR MaLR 1 364 0 277 208 0 78 chr6 163177962 163178005 -26101549 - LTR16B LTR ERVL -34 430 394 180 0 0 0 chr6 163178652 163178672 -26100882 + (GGA)n Simple_repeat Simple_repeat 3 22 0 2040 110 37 23 chr6 163179067 163179367 -26100187 + AluSx SINE Alu 1 304 -8 2295 81 0 17 chr6 163180011 163180308 -26099246 + AluSg SINE Alu 1 292 -18 183 42 0 0 chr6 163180311 163180335 -26099219 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2193 123 3 0 chr6 163181212 163181504 -26098050 - AluSx SINE Alu -19 293 1 420 259 58 14 chr6 163181810 163181949 -26097605 + MLT1E LTR MaLR 95 239 -354 383 275 162 7 chr6 163182112 163182254 -26097300 + L2 LINE L2 2917 3080 -192 23 0 0 0 chr6 163182353 163182376 -26097178 + AT_rich Low_complexity Low_complexity 1 23 0 2188 223 61 46 chr6 163182607 163183354 -26096200 + MER21B LTR ERV1 9 848 -83 375 352 55 21 chr6 163183688 163183833 -26095721 + L2 LINE L2 3121 3270 -2 2654 120 23 35 chr6 163185523 163185956 -26093598 + MSTA LTR MaLR 1 428 0 2842 138 24 102 chr6 163187136 163187795 -26091759 - MER73 LTR ERVL -1 643 36 374 295 92 40 chr6 163188521 163188694 -26090860 - MIR3 SINE MIR -3 205 24 405 0 0 0 chr6 163189539 163189584 -26089970 + (CA)n Simple_repeat Simple_repeat 2 46 0 200 321 52 45 chr6 163189888 163190022 -26089532 + MIR SINE MIR 30 164 -98 1769 152 61 143 chr6 163191127 163191687 -26087867 + MLT2B3 LTR ERVL 1 514 -40 2057 139 30 0 chr6 163191757 163192130 -26087424 + MST-int LTR MaLR 1 384 -1267 1975 251 78 2 chr6 163192137 163192774 -26086780 + MER20B DNA MER1_type 98 783 0 190 328 137 8 chr6 163192793 163192924 -26086630 + MIR3 SINE MIR 40 187 -21 12815 179 26 6 chr6 163193111 163196489 -26083065 + L1PA14 LINE L1 2747 6161 0 250 254 17 42 chr6 163197677 163197795 -26081759 - MER103 DNA DNA -47 119 5 2320 94 0 3 chr6 163198920 163199219 -26080335 + AluSg SINE Alu 1 298 -12 280 242 44 0 chr6 163199220 163199311 -26080243 + MER103 DNA DNA 71 165 -1 578 259 65 51 chr6 163199425 163199839 -26079715 + MLT1J1 LTR MaLR 1 420 -26 2398 71 3 0 chr6 163200185 163200480 -26079074 - AluSp SINE Alu -17 296 1 1891 140 20 10 chr6 163200480 163200773 -26078781 - AluSx SINE Alu -16 296 1 333 232 42 0 chr6 163200799 163200894 -26078660 - L1ME4a LINE L1 -37 6084 5986 191 308 192 0 chr6 163201212 163201316 -26078238 + L2 LINE L2 3146 3269 -3 240 253 33 55 chr6 163201641 163201732 -26077822 + MIR3 SINE MIR 114 202 -6 323 0 0 0 chr6 163202525 163202564 -26076990 + AluY SINE Alu 9 47 -256 503 90 26 0 chr6 163202704 163202782 -26076772 + MADE1 DNA Mariner 1 80 0 1715 156 35 3 chr6 163204215 163204504 -26075050 + AluJb SINE Alu 1 298 -14 21 36 0 0 chr6 163204766 163204794 -26074760 + AT_rich Low_complexity Low_complexity 1 28 0 505 0 15 15 chr6 163204846 163204912 -26074642 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 646 192 62 73 chr6 163204921 163205098 -26074456 + MER58B DNA MER1_type 167 341 0 834 287 63 34 chr6 163206952 163207398 -26072156 - MLT1H LTR MaLR 0 549 91 241 231 192 13 chr6 163207475 163207553 -26072001 - MLT1H LTR MaLR -452 97 6 339 222 111 12 chr6 163207584 163207665 -26071889 - MIR3 SINE MIR -4 204 116 2245 250 96 87 chr6 163207804 163208679 -26070875 + L1MC4 LINE L1 5609 6475 -1567 2257 115 0 0 chr6 163208679 163208984 -26070570 + AluSx SINE Alu 1 305 -7 2245 250 96 87 chr6 163208984 163209311 -26070243 + L1MC4 LINE L1 6475 6798 -1244 1607 99 4 17 chr6 163209311 163209543 -26070011 - MER30 DNA MER1_type 0 230 2 2245 250 96 87 chr6 163209543 163209596 -26069958 + L1MC4 LINE L1 6798 6849 -1193 204 40 0 0 chr6 163209596 163209621 -26069933 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2245 250 96 87 chr6 163209621 163210674 -26068880 + L1MC4 LINE L1 6849 8041 -1 505 282 96 21 chr6 163210703 163210891 -26068663 + MIR SINE MIR 49 250 -12 6466 35 0 1 chr6 163211017 163211822 -26067732 - L1PA5 LINE L1 -1 6153 5350 1852 82 0 8 chr6 163211823 163212078 -26067476 - L1PA3 LINE L1 -3 6152 5900 21 0 0 0 chr6 163212253 163212274 -26067280 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 163212448 163212470 -26067084 + AT_rich Low_complexity Low_complexity 1 22 0 2240 182 64 38 chr6 163213693 163214041 -26065513 + MER44D DNA MER2_type 1 424 -2063 2236 107 10 0 chr6 163214041 163214340 -26065214 - AluSx SINE Alu -10 302 1 2240 182 64 38 chr6 163214340 163214525 -26065029 + MER44D DNA MER2_type 424 603 -2 310 241 157 0 chr6 163217108 163217191 -26062363 - MER5B DNA MER1_type -82 96 1 195 257 92 46 chr6 163217194 163217303 -26062251 - L2 LINE L2 -191 3081 2968 342 313 204 32 chr6 163218400 163218713 -26060841 + L3 LINE CR1 1192 1558 -19 313 235 0 0 chr6 163218828 163218930 -26060624 + L1ME1 LINE L1 2281 2382 -4014 1784 203 34 61 chr6 163218935 163219531 -26060023 + L1ME1 LINE L1 5624 6362 -41 1731 163 0 36 chr6 163220317 163220618 -26058936 + AluJo SINE Alu 1 290 -22 671 227 122 36 chr6 163221912 163222190 -26057364 - L2 LINE L2 -1 3312 3011 216 86 0 0 chr6 163222845 163222880 -26056674 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1760 197 72 25 chr6 163223086 163223528 -26056026 - MLT1C LTR MaLR -4 463 1 1314 124 0 10 chr6 163224265 163224458 -26055096 - AluSg/x SINE Alu -15 295 105 775 242 56 40 chr6 163224586 163224838 -26054716 - MLT1E2 LTR MaLR -57 569 314 1271 201 10 109 chr6 163224860 163225107 -26054447 + MLT2D LTR ERVL 1 194 -220 7031 66 6 1 chr6 163225107 163226208 -26053346 + L1PA8 LINE L1 5068 6172 0 1271 201 10 109 chr6 163226208 163226364 -26053190 + MLT2D LTR ERVL 194 364 -50 870 252 45 16 chr6 163226342 163226584 -26052970 - MLT1E2 LTR MaLR -318 308 60 * 246 192 7 60 chr6 163227901 163228052 -26051502 + GA-rich Low_complexity Low_complexity 3 145 0 542 285 131 48 chr6 163228799 163228984 -26050570 - L1M4 LINE L1 -1068 5078 4910 5463 129 10 21 chr6 163228984 163229299 -26050255 + L1PA16 LINE L1 4821 5138 -1028 2340 110 0 0 chr6 163229299 163229600 -26049954 + AluSx SINE Alu 1 301 -11 5463 129 10 21 chr6 163229600 163230634 -26048920 + L1PA16 LINE L1 5138 6156 -10 542 285 131 48 chr6 163230634 163231701 -26047853 - L1M4 LINE L1 -1236 4910 3722 1466 204 65 139 chr6 163232568 163233222 -26046332 + L1MC4a LINE L1 5879 6445 -1363 1852 189 0 0 chr6 163233222 163233518 -26046036 + AluJb SINE Alu 1 296 -16 1466 204 65 139 chr6 163233518 163233791 -26045763 + L1MC4a LINE L1 6445 6737 -1071 815 212 120 34 chr6 163233837 163234179 -26045375 - MER57A LTR ERV1 -4 399 67 216 67 0 0 chr6 163234183 163234213 -26045341 + (T)n Simple_repeat Simple_repeat 1 30 0 8153 34 1 3 chr6 163234313 163235845 -26043709 - L1PA3 LINE L1 -307 5848 4321 2368 38 0 0 chr6 163235842 163236135 -26043419 + L1PA3 LINE L1 4037 4329 -1817 * 2244 90 0 27 chr6 163236135 163236435 -26043119 - AluY SINE Alu -8 303 12 305 331 159 13 chr6 163237221 163237378 -26042176 - MIR3 SINE MIR -6 202 23 2001 161 38 31 chr6 163237493 163238038 -26041516 + MLT2A2 LTR ERVL 1 554 0 189 333 154 8 chr6 163238487 163238610 -26040944 - L2 LINE L2 0 3272 3132 468 0 0 0 chr6 163238716 163238768 -26040786 + (CA)n Simple_repeat Simple_repeat 2 53 0 219 231 185 28 chr6 163238973 163239081 -26040473 - MIR3 SINE MIR -21 187 63 212 314 160 12 chr6 163240946 163241118 -26038436 - MIR SINE MIR -4 258 63 258 122 0 81 chr6 163242079 163242157 -26037397 + (CAAAA)n Simple_repeat Simple_repeat 1 71 0 369 0 0 0 chr6 163242231 163242272 -26037282 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1654 194 14 33 chr6 163242516 163242877 -26036677 + MLT1A1 LTR MaLR 1 354 -11 459 78 0 0 chr6 163243439 163243503 -26036051 + (CA)n Simple_repeat Simple_repeat 2 65 0 1074 203 15 31 chr6 163243755 163243920 -26035634 + MER33 DNA MER1_type 1 160 -2425 1584 166 7 60 chr6 163243920 163244221 -26035333 + AluJb SINE Alu 1 285 -27 1074 203 15 31 chr6 163244221 163244380 -26035174 + MER33 DNA MER1_type 160 320 -4 337 203 140 14 chr6 163247294 163247437 -26032117 - L1ME4a LINE L1 0 6121 5961 25 51 0 0 chr6 163247844 163247883 -26031671 + AT_rich Low_complexity Low_complexity 1 39 0 327 242 0 0 chr6 163248573 163248672 -26030882 + (CA)n Simple_repeat Simple_repeat 2 100 0 243 223 43 21 chr6 163248835 163248929 -26030625 - MER103 DNA DNA -8 158 63 2302 113 0 0 chr6 163249768 163250070 -26029484 + AluSg SINE Alu 1 302 -8 248 176 165 0 chr6 163250530 163250615 -26028939 - L1MCa LINE L1 -5094 1332 1234 626 258 93 83 chr6 163250626 163251013 -26028541 - L1MCa LINE L1 -5029 1387 997 21 36 0 0 chr6 163251433 163251461 -26028093 + AT_rich Low_complexity Low_complexity 1 28 0 459 327 33 11 chr6 163251936 163252208 -26027346 - L1ME4a LINE L1 -297 5824 5547 357 56 74 0 chr6 163253589 163253643 -26025911 + L1PB1 LINE L1 5811 5868 -283 1289 126 6 0 chr6 163253644 163253839 -26025715 - AluSg/x SINE Alu 0 299 104 23 33 0 0 chr6 163255547 163255577 -26023977 + AT_rich Low_complexity Low_complexity 1 30 0 461 82 16 0 chr6 163256267 163256328 -26023226 + Alu SINE Alu 2 62 -248 862 298 4 8 chr6 163256483 163256730 -26022824 - MIR SINE MIR -5 257 16 669 260 97 75 chr6 163258040 163258371 -26021183 - MER102b DNA MER1_type 0 341 4 267 31 0 0 chr6 163258542 163258574 -26020980 + (T)n Simple_repeat Simple_repeat 1 32 0 1519 50 0 6 chr6 163258706 163258887 -26020667 - AluY SINE Alu -131 180 1 242 250 0 0 chr6 163258982 163259034 -26020520 + (TA)n Simple_repeat Simple_repeat 1 52 0 297 0 0 0 chr6 163259810 163259843 -26019711 + (T)n Simple_repeat Simple_repeat 1 33 0 192 304 0 0 chr6 163361026 163361082 -25918472 + L2 LINE L2 3215 3270 -2 4277 80 5 8 chr6 163361087 163361674 -25917880 - L1PA8 LINE L1 0 6172 5588 674 306 70 31 chr6 163363107 163363462 -25916092 - MLT1K LTR MaLR -4 584 216 1181 151 43 108 chr6 163363462 163363787 -25915767 - MLT1B LTR MaLR -2 388 85 543 169 0 0 chr6 163363791 163363874 -25915680 + AluS SINE Alu 1 83 -230 673 130 0 16 chr6 163363885 163364008 -25915546 + (GGA)n Simple_repeat Simple_repeat 3 123 0 350 221 23 12 chr6 163364015 163364101 -25915453 - MLT1B LTR MaLR -380 87 1 352 176 0 0 chr6 163365040 163365091 -25914463 - AluJ/FRAM SINE Alu -20 282 232 1189 161 0 47 chr6 163365091 163365302 -25914252 + AluJo SINE Alu 1 201 -111 249 33 0 0 chr6 163366373 163366403 -25913151 + (CA)n Simple_repeat Simple_repeat 1 30 0 1382 202 7 31 chr6 163366453 163366745 -25912809 + AluJo SINE Alu 2 286 -26 1759 208 14 16 chr6 163367032 163367398 -25912156 + MLT1A1 LTR MaLR 1 365 0 239 0 32 0 chr6 163368525 163368556 -25910998 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 6132 116 74 18 chr6 163368558 163370077 -25909477 - SVA Other Other -723 1366 1 338 365 6 0 chr6 163370897 163371053 -25908501 + MIR SINE MIR 36 192 -70 914 257 97 54 chr6 163371166 163371649 -25907905 + MLT1H1 LTR MaLR 49 552 -3 2038 117 3 3 chr6 163372050 163372333 -25907221 + AluJb SINE Alu 1 283 -29 501 84 0 0 chr6 163372335 163372406 -25907148 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 680 185 31 15 chr6 163372560 163372690 -25906864 + FLAM_C SINE Alu 1 132 -1 264 170 0 0 chr6 163372690 163372743 -25906811 + GA-rich Low_complexity Low_complexity 3 55 0 186 221 182 13 chr6 163373172 163373249 -25906305 - MIR SINE MIR -78 130 41 1996 144 0 0 chr6 163374590 163374882 -25904672 - AluJb SINE Alu -7 305 14 2033 112 35 3 chr6 163375377 163375662 -25903892 - AluSg SINE Alu -16 294 1 1946 128 35 0 chr6 163376551 163376833 -25902721 + AluSx SINE Alu 1 292 -20 218 302 173 17 chr6 163378042 163378221 -25901333 + MIR SINE MIR 11 217 -45 405 261 130 0 chr6 163378290 163378451 -25901103 + MIR SINE MIR 75 256 -6 1921 104 62 0 chr6 163379521 163379828 -25899726 - AluSx SINE Alu 0 331 9 2233 109 6 13 chr6 163381003 163381314 -25898240 - AluSc SINE Alu 0 309 1 2229 97 3 26 chr6 163381514 163381823 -25897731 - AluSx SINE Alu -10 302 1 2469 60 3 0 chr6 163384950 163385248 -25894306 + AluY SINE Alu 3 301 -10 1728 150 72 44 chr6 163388025 163388170 -25891384 + THE1C LTR MaLR 3 143 -232 1944 154 0 0 chr6 163388170 163388469 -25891085 - AluSx SINE Alu -10 302 4 1728 150 72 44 chr6 163388469 163388684 -25890870 + THE1C LTR MaLR 143 373 -2 216 0 0 0 chr6 163389144 163389168 -25890386 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 322 213 16 0 chr6 163389184 163389245 -25890309 + Charlie8 DNA MER1_type 184 245 -2172 255 355 0 9 chr6 163389315 163389422 -25890132 - MIR SINE MIR -61 147 42 2135 116 31 0 chr6 163389422 163389714 -25889840 + AluSx SINE Alu 1 301 -11 1293 221 4 0 chr6 163389802 163390042 -25889512 + AluJo SINE Alu 65 305 -7 408 208 0 25 chr6 163390066 163390186 -25889368 + GA-rich Low_complexity Low_complexity 4 120 0 188 314 128 0 chr6 163391524 163391610 -25887944 - MIR SINE MIR -1 261 165 204 342 7 65 chr6 163391630 163391713 -25887841 + L3 LINE CR1 1078 1149 -428 852 171 20 70 chr6 163391713 163391912 -25887642 - MER5A DNA MER1_type 0 189 1 204 342 7 65 chr6 163391912 163391983 -25887571 + L3 LINE CR1 1149 1223 -354 2061 135 10 0 chr6 163393000 163393304 -25886250 + AluSx SINE Alu 6 312 0 286 226 21 32 chr6 163393639 163393732 -25885822 + CT-rich Low_complexity Low_complexity 3 94 0 2263 126 0 0 chr6 163394732 163395041 -25884513 + AluSq SINE Alu 1 309 -4 624 160 150 85 chr6 163396294 163396494 -25883060 + ORSL DNA AcHobo 4 216 -59 527 229 75 21 chr6 163396621 163396809 -25882745 + MER113 DNA MER1_type? 1 198 -323 2102 130 0 0 chr6 163396830 163397115 -25882439 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr6 163397116 163397154 -25882400 + (CA)n Simple_repeat Simple_repeat 1 38 0 708 252 9 33 chr6 163397493 163397707 -25881847 + MER3 DNA MER1_type 1 209 0 440 326 62 0 chr6 163398512 163398739 -25880815 + MLT1L LTR MaLR 151 391 -224 2207 111 0 17 chr6 163400568 163400866 -25878688 + AluSx SINE Alu 1 293 -19 219 281 156 10 chr6 163401474 163401570 -25877984 - L2 LINE L2 -4 3268 3159 2215 123 0 0 chr6 163401611 163401912 -25877642 + AluSx SINE Alu 1 301 -11 293 235 185 8 chr6 163401961 163402080 -25877474 - MIR SINE MIR -116 146 7 676 272 155 8 chr6 163402780 163403045 -25876509 + MER46C DNA MER2_type 29 332 -6 440 257 62 21 chr6 163403065 163403209 -25876345 - MIR SINE MIR -65 197 48 252 0 0 0 chr6 163403828 163403856 -25875698 + (TG)n Simple_repeat Simple_repeat 2 29 0 428 304 90 25 chr6 163404677 163404878 -25874676 + MIR SINE MIR 13 226 -36 1898 108 0 4 chr6 163406154 163406447 -25873107 - AluSx SINE Alu 0 326 35 21 0 0 0 chr6 163406704 163406725 -25872829 + AT_rich Low_complexity Low_complexity 1 21 0 2229 106 13 0 chr6 163407048 163407349 -25872205 - AluSx SINE Alu -7 305 1 397 155 117 19 chr6 163407554 163407657 -25871897 + MIR SINE MIR 76 188 -74 436 264 120 12 chr6 163407745 163407912 -25871642 - MIR SINE MIR -50 212 28 2016 135 0 31 chr6 163408045 163408363 -25871191 + AluJo SINE Alu 1 308 -4 249 271 83 50 chr6 163410166 163410347 -25869207 - L2 LINE L2 -1226 2088 1902 1079 222 22 60 chr6 163410411 163410836 -25868718 - MLT1A1 LTR MaLR -2 363 1 2210 112 3 0 chr6 163410957 163411252 -25868302 + AluSx SINE Alu 3 298 -14 22 0 0 0 chr6 163411515 163411537 -25868017 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr6 163413101 163413129 -25866425 + (TC)n Simple_repeat Simple_repeat 1 28 0 206 282 51 13 chr6 163413220 163413298 -25866256 + MIR SINE MIR 74 154 -108 598 266 113 31 chr6 163413454 163413683 -25865871 + MIR SINE MIR 2 249 -13 822 249 64 14 chr6 163413947 163414228 -25865326 - Charlie2a DNA MER1_type -1842 1020 726 1458 176 8 23 chr6 163414334 163414596 -25864958 + AluJb SINE Alu 1 258 -54 591 220 71 119 chr6 163414623 163414690 -25864864 - Charlie2a DNA MER1_type -2482 380 311 2026 147 0 0 chr6 163414690 163414983 -25864571 - AluSx SINE Alu -19 293 1 591 220 71 119 chr6 163414983 163415251 -25864303 - Charlie2a DNA MER1_type -2551 311 61 2935 84 5 3 chr6 163415664 163416047 -25863507 + L1PB2 LINE L1 5761 6144 -7 23 0 0 0 chr6 163416047 163416070 -25863484 + AT_rich Low_complexity Low_complexity 1 23 0 955 284 84 43 chr6 163416800 163417264 -25862290 - MLT1L LTR MaLR -2 613 131 564 224 7 86 chr6 163417544 163417670 -25861884 + L2 LINE L2 3172 3287 -26 2133 109 3 11 chr6 163417670 163417982 -25861572 - AluSx SINE Alu 0 310 1 564 224 7 86 chr6 163417982 163418006 -25861548 + L2 LINE L2 3287 3311 -2 613 264 78 64 chr6 163419052 163419175 -25860379 + L3 LINE CR1 632 752 -825 2015 138 10 3 chr6 163419175 163419479 -25860075 + AluSx SINE Alu 1 306 -6 613 264 78 64 chr6 163419479 163419650 -25859904 + L3 LINE CR1 752 930 -647 228 65 0 0 chr6 163419866 163419897 -25859657 + L1MA10 LINE L1 6304 6334 0 3211 207 66 20 chr6 163419918 163420041 -25859513 - L1MB7 LINE L1 -10 6174 6058 2201 106 34 0 chr6 163420041 163420333 -25859221 - AluSx SINE Alu -10 302 1 3211 207 66 20 chr6 163420333 163420666 -25858888 - L1MB7 LINE L1 -126 6058 5742 777 212 0 0 chr6 163420666 163420798 -25858756 - FLAM_A SINE Alu -1 132 1 3211 207 66 20 chr6 163420798 163421798 -25857756 - L1MB7 LINE L1 -442 5742 4653 427 360 154 15 chr6 163421800 163422189 -25857365 + L3 LINE CR1 1079 1521 -56 535 264 114 12 chr6 163422254 163422421 -25857133 - MIR SINE MIR -69 193 10 182 326 56 56 chr6 163422745 163422941 -25856613 - L2 LINE L2 -844 2470 2275 437 289 72 39 chr6 163423159 163423296 -25856258 - MIR SINE MIR -28 234 86 2066 73 8 0 chr6 163423296 163423555 -25855999 + AluSp SINE Alu 42 302 -11 437 289 72 39 chr6 163423555 163423625 -25855929 - MIR SINE MIR -176 86 20 263 237 173 22 chr6 163423773 163423912 -25855642 - L2 LINE L2 -1 3312 3153 1353 192 0 61 chr6 163423934 163424247 -25855307 + AluJo SINE Alu 1 294 -18 1297 215 77 19 chr6 163424790 163425115 -25854439 + MER39 LTR ERV1 362 705 -2 197 356 94 30 chr6 163425118 163425329 -25854225 + L2 LINE L2 2422 2651 -663 2349 106 3 0 chr6 163425329 163425640 -25853914 - AluSx SINE Alu 0 312 1 197 356 94 30 chr6 163425640 163425661 -25853893 + L2 LINE L2 2651 2669 -645 1346 134 0 0 chr6 163426502 163426688 -25852866 + AluSx SINE Alu 1 186 -126 21 0 0 0 chr6 163427455 163427476 -25852078 + AT_rich Low_complexity Low_complexity 1 21 0 182 317 17 0 chr6 163428111 163428171 -25851383 - L2 LINE L2 -529 2785 2725 214 264 181 0 chr6 163428325 163428397 -25851157 + MIR3 SINE MIR 103 187 -21 216 158 0 0 chr6 163429847 163429885 -25849669 + T-rich Low_complexity Low_complexity 1 38 0 1688 106 4 4 chr6 163430047 163430282 -25849272 + THE1C LTR MaLR 1 235 -140 3116 45 0 0 chr6 163430282 163430660 -25848894 - L1PA3 LINE L1 -3796 2350 1973 26911 25 17 0 chr6 163430660 163434433 -25845121 + L1PA3 LINE L1 2366 6154 -1 1148 129 0 0 chr6 163434448 163434603 -25844951 + THE1C LTR MaLR 219 373 -2 207 258 34 56 chr6 163434790 163434879 -25844675 + L2 LINE L2 3186 3272 0 231 174 43 0 chr6 163435052 163435098 -25844456 + CT-rich Low_complexity Low_complexity 4 51 0 818 307 114 10 chr6 163435131 163435525 -25844029 - L3 LINE CR1 -2 1575 1141 907 205 0 0 chr6 163435696 163435867 -25843687 - FRAM SINE Alu -5 171 1 851 180 47 7 chr6 163435915 163436065 -25843489 - MER5A DNA MER1_type -2 187 32 299 221 11 42 chr6 163436132 163436227 -25843327 + MER96 DNA MER1_type? 1 92 -83 194 244 0 0 chr6 163436346 163436387 -25843167 - L3 LINE CR1 -398 1179 1139 2226 109 0 0 chr6 163437195 163437517 -25842037 - AluSx SINE Alu 0 322 1 275 255 49 49 chr6 163438063 163438165 -25841389 + MIR3 SINE MIR 84 185 -23 618 279 29 42 chr6 163439446 163439686 -25839868 - MIR SINE MIR -6 256 20 2037 193 59 14 chr6 163440249 163440689 -25838865 - MLT1C LTR MaLR -2 465 6 291 336 81 56 chr6 163441566 163442232 -25837322 + L2 LINE L2 2545 3271 -1 825 288 64 9 chr6 163442383 163442803 -25836751 + L1M4 LINE L1 4796 5238 -908 1688 249 80 23 chr6 163442827 163443514 -25836040 + HAL1 LINE L1 806 1531 -976 1877 282 84 21 chr6 163443569 163443786 -25835768 + HAL1 LINE L1 1627 1829 -678 2236 149 33 28 chr6 163443786 163444148 -25835406 + THE1B LTR MaLR 1 364 0 1877 282 84 21 chr6 163444148 163444656 -25834898 + HAL1 LINE L1 1829 2398 -109 25 31 0 0 chr6 163445083 163445115 -25834439 + AT_rich Low_complexity Low_complexity 1 32 0 1801 147 18 3 chr6 163447599 163447885 -25831669 - AluJo SINE Alu -18 294 5 370 209 43 35 chr6 163448250 163448365 -25831189 + L1MA8 LINE L1 6166 6281 -10 315 254 51 65 chr6 163449937 163450075 -25829479 - L2 LINE L2 -3 3269 3134 190 202 0 131 chr6 163450133 163450217 -25829337 - L2 LINE L2 -101 3212 3140 333 308 204 43 chr6 163450431 163451322 -25828232 + HAL1 LINE L1 39 1073 -1434 227 244 54 65 chr6 163451334 163451502 -25828052 + L1MA4 LINE L1 6127 6292 -8 324 120 0 0 chr6 163451659 163451709 -25827845 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 481 372 31 23 chr6 163451752 163452104 -25827450 + L2 LINE L2 1728 2082 -1232 247 265 224 24 chr6 163452369 163452539 -25827015 + MIR SINE MIR 56 259 -3 332 297 91 48 chr6 163454575 163454740 -25824814 - MIR SINE MIR -71 191 20 607 244 125 88 chr6 163455000 163455488 -25824066 + LTR33 LTR ERVL 13 518 -3 445 157 270 0 chr6 163455854 163455969 -25823585 + MLT1J2 LTR MaLR 2 147 -303 182 146 0 24 chr6 163456042 163456083 -25823471 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 228 111 0 0 chr6 163458068 163458104 -25821450 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 426 223 18 27 chr6 163460365 163460477 -25819077 + MER103 DNA DNA 10 120 -46 34 0 0 0 chr6 163460594 163460628 -25818926 + AT_rich Low_complexity Low_complexity 1 34 0 655 271 78 10 chr6 163460666 163460858 -25818696 - MIR SINE MIR -12 250 46 190 353 95 35 chr6 163463683 163463799 -25815755 + L2 LINE L2 3127 3249 -23 2126 181 61 14 chr6 163464281 163464722 -25814832 - L1MB7 LINE L1 -9 6175 5714 1446 236 15 3 chr6 163464725 163465059 -25814495 - L1MB7 LINE L1 -1279 4867 4530 5203 239 42 57 chr6 163465062 163465976 -25813578 + L1M3c LINE L1 1 928 -5282 1679 166 18 35 chr6 163465976 163466260 -25813294 + AluJb SINE Alu 10 288 -24 5203 239 42 57 chr6 163466260 163466679 -25812875 + L1M3c LINE L1 928 1352 -4858 2305 115 0 0 chr6 163466679 163466983 -25812571 - AluSx SINE Alu -8 304 1 5203 239 42 57 chr6 163466983 163468391 -25811163 + L1M3c LINE L1 1352 2384 -3826 2099 122 10 0 chr6 163468525 163468820 -25810734 - AluSx SINE Alu -10 302 5 2012 173 55 3 chr6 163469313 163469659 -25809895 - MLT1A1 LTR MaLR 0 365 2 2142 108 0 0 chr6 163470146 163470425 -25809129 + AluSx SINE Alu 1 279 -33 21 0 0 0 chr6 163471685 163471706 -25807848 + AT_rich Low_complexity Low_complexity 1 21 0 1629 154 42 18 chr6 163472359 163472644 -25806910 + AluJb SINE Alu 1 292 -20 183 133 0 0 chr6 163472780 163472810 -25806744 + L2 LINE L2 3284 3313 0 581 180 86 8 chr6 163472892 163473020 -25806534 - L1MB5 LINE L1 0 6174 6037 198 0 0 0 chr6 163473278 163473300 -25806254 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2725 168 90 23 chr6 163474077 163474600 -25804954 - MER89 LTR ERV1 -1 558 1 787 268 69 4 chr6 163474892 163475123 -25804431 - MIR SINE MIR -16 246 1 194 105 26 0 chr6 163476213 163476251 -25803303 + T-rich Low_complexity Low_complexity 4 42 0 2182 132 0 0 chr6 163476470 163476773 -25802781 + AluSx SINE Alu 1 303 -9 1968 266 91 56 chr6 163476968 163477158 -25802396 - HAL1 LINE L1 0 2507 2325 2258 119 0 10 chr6 163477158 163477470 -25802084 - AluSq SINE Alu -4 309 1 1968 266 91 56 chr6 163477470 163478431 -25801123 - HAL1 LINE L1 -182 2325 1315 362 221 41 82 chr6 163478436 163478558 -25800996 - HAL1 LINE L1 -1232 1275 1159 2312 85 16 16 chr6 163478560 163478865 -25800689 - AluSx SINE Alu -6 306 2 25 31 0 0 chr6 163478922 163478954 -25800600 + AT_rich Low_complexity Low_complexity 1 32 0 699 186 17 35 chr6 163478982 163479154 -25800400 - L1MA4 LINE L1 -11 6289 6121 262 148 0 37 chr6 163479324 163479378 -25800176 - FRAM/FAM SINE Alu -114 52 1 2358 92 0 3 chr6 163479718 163480021 -25799533 + AluSq SINE Alu 1 302 -11 2136 113 10 0 chr6 163481393 163481686 -25797868 - AluSx SINE Alu -16 296 1 1064 204 91 57 chr6 163481948 163482301 -25797253 + MLT1A1 LTR MaLR 1 365 0 211 366 40 0 chr6 163483074 163483175 -25796379 + MER91C DNA MER1_type 1 105 -35 529 274 56 116 chr6 163483185 163483384 -25796170 + L2 LINE L2 2922 3131 -182 2175 110 0 0 chr6 163483384 163483696 -25795858 - AluSx SINE Alu 0 314 3 529 274 56 116 chr6 163483696 163483787 -25795767 + L2 LINE L2 3131 3183 -130 408 40 0 0 chr6 163483787 163483837 -25795717 + (CA)n Simple_repeat Simple_repeat 1 50 0 529 274 56 116 chr6 163483837 163483957 -25795597 + L2 LINE L2 3183 3309 -4 217 282 48 48 chr6 163486392 163486495 -25793059 + MIR SINE MIR 13 115 -147 800 303 8 8 chr6 163486840 163487101 -25792453 + MIR SINE MIR 2 262 0 2093 122 0 35 chr6 163488213 163488343 -25791211 + AluSq SINE Alu 6 139 -174 2283 82 3 14 chr6 163488343 163488668 -25790886 + AluSp SINE Alu 1 313 0 2093 122 0 35 chr6 163488668 163488856 -25790698 + AluSq SINE Alu 139 313 0 483 18 0 0 chr6 163490079 163490135 -25789419 + (TG)n Simple_repeat Simple_repeat 1 56 0 267 31 0 0 chr6 163490134 163490166 -25789388 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 2341 72 19 7 chr6 163490880 163491187 -25788367 + AluY SINE Alu 1 311 0 263 68 68 0 chr6 163491278 163491337 -25788217 + CT-rich Low_complexity Low_complexity 2 64 0 437 218 153 16 chr6 163492042 163492166 -25787388 - L2 LINE L2 0 3313 3173 5068 222 48 69 chr6 163492434 163494599 -25784955 - L1P3 LINE L1 -4207 2254 114 545 167 0 11 chr6 163494721 163494811 -25784743 + L1PA12 LINE L1 1462 1550 -6031 336 275 25 0 chr6 163494821 163494901 -25784653 - MLT1-int LTR MaLR -848 523 442 1207 264 96 14 chr6 163494903 163495259 -25784295 - MLT1G1 LTR MaLR -210 385 1 362 309 9 58 chr6 163496451 163496705 -25782849 + MIR SINE MIR 21 256 -6 893 203 15 46 chr6 163496865 163497062 -25782492 - MER20 DNA MER1_type -12 207 17 1349 164 51 121 chr6 163497139 163497528 -25782026 + MLT1A1 LTR MaLR 4 365 0 2230 117 3 0 chr6 163498777 163499085 -25780469 + AluSc SINE Alu 1 309 0 2517 52 0 16 chr6 163499166 163499474 -25780080 - AluY SINE Alu -8 303 1 6508 88 1 10 chr6 163500313 163502004 -25777550 - L1PA8 LINE L1 -1 6171 4549 24 32 0 0 chr6 163502004 163502035 -25777519 + AT_rich Low_complexity Low_complexity 1 31 0 2204 70 7 0 chr6 163502530 163502800 -25776754 + AluY SINE Alu 31 302 -9 1811 107 22 37 chr6 163504272 163504543 -25775011 - AluSc SINE Alu -10 299 33 252 77 0 0 chr6 163504807 163504846 -25774708 + (CCTG)n Simple_repeat Simple_repeat 2 40 0 2053 122 3 0 chr6 163505033 163505321 -25774233 - AluSc SINE Alu -20 289 1 1714 144 45 17 chr6 163506112 163506404 -25773150 + AluJo SINE Alu 1 300 -12 219 139 0 0 chr6 163506860 163506896 -25772658 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 347 224 0 0 chr6 163507994 163508070 -25771484 - MLT2B1 LTR ERVL 0 520 445 320 167 14 0 chr6 163508115 163508187 -25771367 + (TA)n Simple_repeat Simple_repeat 2 74 0 1730 210 66 49 chr6 163508189 163508661 -25770893 - MLT2B1 LTR ERVL -40 480 1 299 209 0 23 chr6 163509575 163509661 -25769893 + GA-rich Low_complexity Low_complexity 1 84 0 381 279 75 50 chr6 163510121 163510322 -25769232 + L1ME LINE L1 5269 5474 -688 446 262 0 0 chr6 163510325 163510432 -25769122 + L1ME LINE L1 5571 5677 -444 295 327 12 48 chr6 163510509 163510674 -25768880 - L3b LINE CR1 -94 1489 1331 1212 188 140 30 chr6 163511043 163511372 -25768182 - MLT1A1 LTR MaLR 0 365 1 241 331 93 26 chr6 163511491 163511760 -25767794 - L2 LINE L2 -402 2912 2626 380 313 106 12 chr6 163511935 163512095 -25767459 + MER5B DNA MER1_type 1 175 -3 2285 98 0 10 chr6 163512101 163512406 -25767148 + AluY SINE Alu 1 302 -9 2318 96 0 0 chr6 163512814 163513107 -25766447 + AluSx SINE Alu 1 293 -19 393 22 0 0 chr6 163514110 163514156 -25765398 + (CA)n Simple_repeat Simple_repeat 2 47 0 189 147 0 0 chr6 163514489 163514523 -25765031 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 2286 110 0 19 chr6 163514570 163514888 -25764666 - AluSx SINE Alu 0 312 1 2203 175 55 13 chr6 163515943 163516394 -25763160 + MER44D DNA MER2_type 2 526 -79 416 165 11 0 chr6 163516398 163516489 -25763065 + (TA)n Simple_repeat Simple_repeat 1 92 0 453 198 22 0 chr6 163516504 163516595 -25762959 + MER44D DNA MER2_type 613 705 0 326 176 29 0 chr6 163517113 163517181 -25762373 - L1MC5 LINE L1 -86 7875 7806 1761 123 116 0 chr6 163518142 163518418 -25761136 + AluSq SINE Alu 1 308 -5 270 243 29 0 chr6 163518498 163518568 -25760986 + MIR SINE MIR 77 148 -114 2410 82 0 0 chr6 163518904 163519209 -25760345 - AluY SINE Alu -6 305 1 613 192 8 16 chr6 163519282 163519407 -25760147 - Tigger7 DNA MER2_type -1 2586 2463 * 3080 181 4 2 chr6 163519401 163519949 -25759605 - Tigger7 DNA MER2_type -184 549 1 26 0 0 0 chr6 163520081 163520107 -25759447 + AT_rich Low_complexity Low_complexity 1 26 0 1317 191 83 57 chr6 163520334 163520706 -25758848 + MLT1B LTR MaLR 1 382 -8 1905 163 14 0 chr6 163520975 163521270 -25758284 + AluJb SINE Alu 3 301 -11 290 213 38 25 chr6 163522571 163522651 -25756903 + MER103 DNA DNA 3 83 -83 1728 98 0 13 chr6 163522905 163523139 -25756415 - AluSc SINE Alu -5 304 74 633 74 0 0 chr6 163523139 163523220 -25756334 + AluY SINE Alu 9 89 -222 37 52 0 0 chr6 163523832 163523890 -25755664 + AT_rich Low_complexity Low_complexity 1 58 0 2710 7 0 0 chr6 163525180 163525471 -25754083 + AluYb8 SINE Alu 16 306 -12 220 321 113 6 chr6 163526924 163527068 -25752486 - MIR3 SINE MIR -47 161 42 2373 138 48 17 chr6 163527215 163527634 -25751920 + MSTB1 LTR MaLR 1 432 0 2121 174 136 5 chr6 163527976 163528424 -25751130 + MLT2B2 LTR ERVL 1 507 -8 1943 155 3 3 chr6 163529192 163529501 -25750053 + AluSx SINE Alu 1 309 -3 7497 195 33 18 chr6 163529771 163530128 -25749426 + L1 LINE L1 2366 2716 -3430 1646 167 73 42 chr6 163530128 163530482 -25749072 - MLT1A1 LTR MaLR 0 365 1 7497 195 33 18 chr6 163530482 163532008 -25747546 + L1 LINE L1 2716 4277 -1869 254 269 51 13 chr6 163532013 163532091 -25747463 - L2 LINE L2 -53 3219 3139 355 300 63 68 chr6 163532659 163532755 -25746799 + MIR3 SINE MIR 2 97 -111 311 0 0 25 chr6 163532755 163532795 -25746759 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2062 107 0 11 chr6 163532797 163533069 -25746485 - AluSx SINE Alu -23 289 21 355 300 63 68 chr6 163533069 163533159 -25746395 + MIR3 SINE MIR 98 190 -18 192 77 0 0 chr6 163533170 163533196 -25746358 + (GGA)n Simple_repeat Simple_repeat 3 28 0 698 259 61 20 chr6 163534184 163534381 -25745173 - MIR SINE MIR -44 218 14 222 171 0 0 chr6 163534622 163534663 -25744891 + (TG)n Simple_repeat Simple_repeat 2 42 0 184 111 0 0 chr6 163534666 163534693 -25744861 + L2 LINE L2 3280 3306 -7 241 269 29 19 chr6 163535222 163535326 -25744228 - L2 LINE L2 -926 2388 2284 427 199 132 7 chr6 163535533 163535669 -25743885 + L1MC4 LINE L1 7575 7727 -315 244 190 0 0 chr6 163535723 163535781 -25743773 + L1MC4 LINE L1 7985 8042 0 12249 103 33 108 chr6 163535955 163537000 -25742554 + Tigger1 DNA MER2_type 2 1124 -1294 1237 79 0 6 chr6 163537000 163537164 -25742390 - AluY SINE Alu 0 311 149 12249 103 33 108 chr6 163537164 163538013 -25741541 + Tigger1 DNA MER2_type 1124 2035 -383 2043 130 10 10 chr6 163538013 163538320 -25741234 - AluJb SINE Alu -5 307 1 12249 103 33 108 chr6 163538320 163538584 -25740970 + Tigger1 DNA MER2_type 2035 2131 -287 1906 101 43 0 chr6 163538584 163538841 -25740713 + AluSx SINE Alu 1 268 -44 12249 103 33 108 chr6 163538841 163538981 -25740573 + Tigger1 DNA MER2_type 2131 2280 -138 27 29 0 0 chr6 163539295 163539329 -25740225 + AT_rich Low_complexity Low_complexity 1 34 0 1968 150 4 0 chr6 163540601 163540925 -25738629 + AluJb SINE Alu 2 326 0 855 176 0 27 chr6 163540971 163541119 -25738435 + FRAM SINE Alu 18 161 -15 192 213 188 25 chr6 163541120 163541200 -25738354 - MER5A DNA MER1_type -57 132 40 23 33 0 0 chr6 163542782 163542812 -25736742 + AT_rich Low_complexity Low_complexity 1 30 0 1771 116 0 61 chr6 163544062 163544339 -25735215 + AluSx SINE Alu 1 260 -52 258 261 8 25 chr6 163544356 163544475 -25735079 + (GGGTG)n Simple_repeat Simple_repeat 4 120 0 2506 59 0 0 chr6 163645429 163645735 -25633819 + AluY SINE Alu 1 306 -5 834 189 15 60 chr6 163645741 163645942 -25633612 + MER4B-int LTR ERV1 532 723 -6035 1176 166 25 56 chr6 163646045 163646329 -25633225 + MER4B-int LTR ERV1 698 972 -5786 2234 108 0 9 chr6 163646343 163646658 -25632896 + AluSx SINE Alu 1 312 0 560 155 86 0 chr6 163649056 163649172 -25630382 - L1MB7 LINE L1 -15 6169 6044 1063 175 44 15 chr6 163650239 163650397 -25629157 - AluSq SINE Alu -17 296 129 2324 77 7 0 chr6 163650397 163650694 -25628860 - AluSp SINE Alu -14 299 1 1063 175 44 15 chr6 163650694 163650741 -25628813 - AluSq SINE Alu -184 129 85 853 177 0 0 chr6 163650741 163650871 -25628683 - AluJb SINE Alu -55 257 128 1570 154 38 27 chr6 163650891 163651184 -25628370 - AluJo SINE Alu -16 296 1 220 281 14 65 chr6 163651275 163651414 -25628140 + C-rich Low_complexity Low_complexity 6 137 0 369 312 30 24 chr6 163651561 163651784 -25627770 + CT-rich Low_complexity Low_complexity 1 224 0 282 330 28 0 chr6 163654456 163654562 -25624992 + L2 LINE L2 2048 2156 -1158 366 264 88 24 chr6 163655125 163655250 -25624304 + L2 LINE L2 3175 3307 -6 294 375 0 17 chr6 163655234 163655354 -25624200 - MIR SINE MIR -125 137 20 * 833 274 111 51 chr6 163655332 163655800 -25623754 + L2 LINE L2 2201 2696 -618 961 224 12 50 chr6 163655801 163656060 -25623494 + MLT1A2 LTR MaLR 1 249 -125 2199 103 3 3 chr6 163656102 163656402 -25623152 - AluSg SINE Alu -10 300 1 1773 107 37 15 chr6 163656839 163657111 -25622443 + AluSx SINE Alu 30 307 -5 376 333 27 10 chr6 163659306 163659666 -25619888 + CT-rich Low_complexity Low_complexity 1 366 0 2529 32 6 19 chr6 163660796 163661109 -25618445 - AluY SINE Alu -2 309 1 202 233 0 0 chr6 163661120 163661163 -25618391 - L2 LINE L2 -8 3305 3263 180 179 90 15 chr6 163661133 163661200 -25618354 - MIR SINE MIR -15 247 176 * 793 125 23 0 chr6 163661273 163661401 -25618153 - AluJb SINE Alu -5 307 177 266 0 0 29 chr6 163661429 163661464 -25618090 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1797 138 0 57 chr6 163662513 163662831 -25616723 + AluSx SINE Alu 1 300 -12 210 303 98 39 chr6 163663272 163663405 -25616149 + MER5A DNA MER1_type 13 143 -35 2594 55 0 0 chr6 163663912 163664223 -25615331 - AluY SINE Alu 0 311 1 2017 155 3 0 chr6 163665293 163665590 -25613964 + AluSq SINE Alu 1 298 -15 427 46 46 0 chr6 163665595 163665660 -25613894 + (GAAA)n Simple_repeat Simple_repeat 1 68 0 405 304 83 33 chr6 163666368 163666549 -25613005 + MIR SINE MIR 23 212 -50 739 191 18 100 chr6 163666556 163666776 -25612778 + MIR SINE MIR 58 259 -3 201 121 0 0 chr6 163666803 163666836 -25612718 + (CAT)n Simple_repeat Simple_repeat 1 33 0 381 307 20 27 chr6 163667318 163667468 -25612086 - L3 LINE CR1 -168 1409 1261 973 284 135 54 chr6 163667956 163668474 -25611080 + MLT1K LTR MaLR 2 561 -27 947 315 29 29 chr6 163668807 163669185 -25610369 - L3 LINE CR1 -763 814 437 439 298 25 67 chr6 163670073 163670311 -25609243 - MIR SINE MIR -7 255 28 359 352 8 16 chr6 163672572 163672700 -25606854 - MIR SINE MIR -66 142 16 2497 160 10 2 chr6 163672744 163673144 -25606410 - MER57A LTR ERV1 0 403 1 909 266 189 38 chr6 163673252 163673703 -25605851 - LTR33 LTR ERVL -2 519 1 2324 84 0 0 chr6 163674668 163674984 -25604570 - AluSq SINE Alu 0 316 1 1031 145 0 0 chr6 163678046 163678191 -25601363 + L1PB4 LINE L1 6001 6145 -11 305 24 24 0 chr6 163678204 163678246 -25601308 + (TG)n Simple_repeat Simple_repeat 2 44 0 369 344 19 16 chr6 163678390 163678563 -25600991 - MIR SINE MIR -62 146 6 426 69 0 0 chr6 163678714 163678772 -25600782 + (CA)n Simple_repeat Simple_repeat 1 58 0 622 259 31 85 chr6 163679054 163679347 -25600207 - MER102b DNA MER1_type -32 309 33 2228 107 0 0 chr6 163679359 163679657 -25599897 - AluSx SINE Alu -14 298 1 2014 127 3 3 chr6 163680062 163680353 -25599201 + AluSx SINE Alu 1 291 -21 353 337 36 18 chr6 163680459 163680625 -25598929 + MIR SINE MIR 7 175 -87 25 0 0 0 chr6 163681202 163681227 -25598327 + AT_rich Low_complexity Low_complexity 1 25 0 502 141 0 13 chr6 163681232 163681310 -25598244 + MADE1 DNA Mariner 1 77 -3 246 179 0 0 chr6 163681314 163681370 -25598184 - L1MC4 LINE L1 -1339 6703 6648 602 304 134 7 chr6 163681469 163681752 -25597802 + L1ME1 LINE L1 45 363 -6033 3113 228 21 21 chr6 163681797 163682656 -25596898 + L1ME1 LINE L1 2202 3060 -3155 1135 247 28 3 chr6 163682711 163682994 -25596560 + L1ME1 LINE L1 3433 3722 -2493 3559 230 59 11 chr6 163683008 163684284 -25595270 + L1ME1 LINE L1 4894 6229 -6 456 273 25 7 chr6 163684622 163684782 -25594772 + L1ME1 LINE L1 5397 5563 -599 923 227 53 16 chr6 163684789 163685036 -25594518 + L1ME1 LINE L1 5904 6159 -7 226 348 0 0 chr6 163685133 163685222 -25594332 - HAL1 LINE L1 -342 2165 2077 2722 171 44 35 chr6 163685258 163685540 -25594014 - MER89 LTR ERV1 0 559 281 4037 88 2 8 chr6 163685540 163686054 -25593500 - MER9 LTR ERVK 0 511 1 2722 171 44 35 chr6 163686054 163686102 -25593452 - MER89 LTR ERV1 -278 281 235 2740 38 3 6 chr6 163686102 163686417 -25593137 - L1PA7 LINE L1 -1 6153 5840 2722 171 44 35 chr6 163686417 163686635 -25592919 - MER89 LTR ERV1 -324 235 5 695 264 45 76 chr6 163686777 163687107 -25592447 - HAL1 LINE L1 -677 1830 1511 2048 93 0 74 chr6 163687108 163687419 -25592135 - AluSc SINE Alu -14 295 8 2081 148 97 49 chr6 163687420 163687845 -25591709 + MER67D LTR ERV1 68 512 -2 30 77 0 0 chr6 163688267 163688332 -25591222 + AT_rich Low_complexity Low_complexity 1 65 0 337 276 221 36 chr6 163688839 163689038 -25590516 + MIR SINE MIR 30 262 0 1450 220 73 63 chr6 163689111 163689648 -25589906 + MER34 LTR ERV1 1 542 0 822 261 86 50 chr6 163689720 163690119 -25589435 + LTR38B LTR ERV1 49 493 -117 3392 97 7 0 chr6 163690119 163690550 -25589004 + MER57B LTR ERV1 1 434 0 822 261 86 50 chr6 163690550 163690673 -25588881 + LTR38B LTR ERV1 493 610 0 963 189 12 0 chr6 163690748 163690917 -25588637 - MER105 DNA DNA -2 202 32 248 331 31 8 chr6 163690993 163691120 -25588434 + L1MC4a LINE L1 5793 5922 -1886 180 97 0 0 chr6 163691209 163691240 -25588314 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 670 139 0 165 chr6 163691885 163692043 -25587511 - Tigger3(Golem) DNA MER2_type 0 3029 2898 292 228 18 0 chr6 163692051 163692108 -25587446 - Tigger3(Golem) DNA MER2_type -2971 58 1 1188 241 100 9 chr6 163692342 163692861 -25586693 - MLT2E LTR ERVL 0 628 10 359 321 79 26 chr6 163693185 163693375 -25586179 - L2 LINE L2 -2 3311 3112 481 126 103 0 chr6 163693391 163693478 -25586076 - L1MA4A LINE L1 -20 6283 6188 508 99 12 12 chr6 163693481 163693562 -25585992 - L1MA4A LINE L1 -181 6122 6042 483 255 159 38 chr6 163693566 163693805 -25585749 - L2 LINE L2 -217 3096 2829 624 262 80 34 chr6 163694737 163694974 -25584580 - MIR SINE MIR -13 249 2 1463 219 2 81 chr6 163695050 163695304 -25584250 - MLT1A2 LTR MaLR 0 374 162 2270 83 0 17 chr6 163695304 163695605 -25583949 + AluSc SINE Alu 1 296 -13 1463 219 2 81 chr6 163695605 163695756 -25583798 - MLT1A2 LTR MaLR -212 162 1 472 257 68 20 chr6 163695813 163695961 -25583593 - MIR SINE MIR -15 247 93 1361 159 84 90 chr6 163696025 163696193 -25583361 + MER2 DNA MER2_type 2 169 -176 922 200 7 7 chr6 163696193 163696348 -25583206 + FRAM SINE Alu 1 155 -11 1361 159 84 90 chr6 163696348 163696524 -25583030 + MER2 DNA MER2_type 169 344 -1 677 219 15 0 chr6 163696638 163696775 -25582779 - MLT1J1 LTR MaLR -306 140 2 14247 128 23 13 chr6 163697339 163698771 -25580783 - Tigger1 DNA MER2_type 0 2418 953 2460 60 7 0 chr6 163698771 163699069 -25580485 + AluY SINE Alu 1 300 -11 14247 128 23 13 chr6 163699069 163699871 -25579683 - Tigger1 DNA MER2_type -1465 953 161 24158 169 14 23 chr6 163699871 163704721 -25574833 + L1PA11 LINE L1 849 6468 -1144 2341 97 3 0 chr6 163704721 163705029 -25574525 + AluSp SINE Alu 1 309 -4 24158 169 14 23 chr6 163705029 163706062 -25573492 + L1PA11 LINE L1 6468 7508 -104 2371 214 118 20 chr6 163706066 163706725 -25572829 + MER50 LTR ERV1 11 734 0 880 73 0 0 chr6 163706725 163706834 -25572720 + L1PA11 LINE L1 6064 6172 -2 1042 176 22 0 chr6 163706868 163707050 -25572504 - Tigger1 DNA MER2_type -2232 186 1 3046 176 23 13 chr6 163707236 163707540 -25572014 + L1M2 LINE L1 4770 5069 -1243 2216 49 0 8 chr6 163707540 163707803 -25571751 - AluY SINE Alu -11 300 40 3046 176 23 13 chr6 163707803 163708517 -25571037 + L1M2 LINE L1 5069 5799 -513 263 252 0 48 chr6 163708497 163708600 -25570954 + L1MA8 LINE L1 6182 6279 -12 * 363 310 185 14 chr6 163708732 163709019 -25570535 - MER102b DNA MER1_type 0 341 6 71 87 0 0 chr6 163709816 163709999 -25569555 + AT_rich Low_complexity Low_complexity 1 183 0 1653 181 7 4 chr6 163710657 163710934 -25568620 - AluJb SINE Alu -34 278 1 501 294 101 50 chr6 163711427 163711931 -25567623 + HAL1 LINE L1 1826 2355 -152 927 298 147 35 chr6 163711948 163712609 -25566945 - Charlie7 DNA MER1_type -1853 759 25 462 299 31 10 chr6 163713099 163713293 -25566261 + MLT1F LTR MaLR 1 198 -344 918 231 137 32 chr6 163713568 163714000 -25565554 + Charlie7 DNA MER1_type 2136 2612 0 1646 158 0 79 chr6 163714027 163714343 -25565211 - AluJo SINE Alu -21 291 1 255 260 227 45 chr6 163714468 163714622 -25564932 - MIR SINE MIR -62 200 19 376 305 14 56 chr6 163714706 163714919 -25564635 + HsTC2b DNA Tc2 17 220 -695 1268 169 13 38 chr6 163715166 163715226 -25564328 + AluJb SINE Alu 64 124 -188 1822 179 0 7 chr6 163715226 163715522 -25564032 - AluJb SINE Alu -18 294 1 1268 169 13 38 chr6 163715522 163715697 -25563857 + AluJb SINE Alu 124 293 -19 2520 189 39 57 chr6 163715828 163716390 -25563164 - MER54A LTR ERVL -349 552 1 2081 194 65 14 chr6 163716487 163716919 -25562635 + MLT1C LTR MaLR 7 460 -7 353 233 180 13 chr6 163717283 163717433 -25562121 - LTR41 LTR ERVL -598 175 1 803 157 6 45 chr6 163717558 163717736 -25561818 - Charlie4a DNA MER1_type 0 508 338 1917 161 3 7 chr6 163717736 163718046 -25561508 + AluJo SINE Alu 1 309 -3 1086 208 79 46 chr6 163718071 163718448 -25561106 + MLT2B1 LTR ERVL 3 449 -71 195 146 0 0 chr6 163718457 163718498 -25561056 + (CA)n Simple_repeat Simple_repeat 2 42 0 217 299 82 37 chr6 163718705 163718839 -25560715 + L2 LINE L2 3128 3267 -5 305 104 92 6 chr6 163719051 163719214 -25560340 + (TA)n Simple_repeat Simple_repeat 1 177 0 * 558 49 68 25 chr6 163719176 163719338 -25560216 + (TATAA)n Simple_repeat Simple_repeat 1 169 0 400 251 47 0 chr6 163719340 163719511 -25560043 + (TA)n Simple_repeat Simple_repeat 2 180 0 676 219 7 13 chr6 163719538 163719689 -25559865 - Charlie4a DNA MER1_type -177 331 182 1811 155 3 30 chr6 163719707 163720010 -25559544 - AluSx SINE Alu -17 295 1 644 121 30 8 chr6 163720510 163720642 -25558912 + GA-rich Low_complexity Low_complexity 1 135 0 660 168 68 37 chr6 163720642 163720803 -25558751 - Charlie4a DNA MER1_type -311 197 32 198 288 102 25 chr6 163721527 163721645 -25557909 - L2 LINE L2 -5 3267 3141 4598 92 14 5 chr6 163723422 163724054 -25555500 - L1PA11 LINE L1 -1 6173 5536 393 310 28 35 chr6 163726151 163726293 -25553261 - MER5B DNA MER1_type -3 175 35 638 182 33 0 chr6 163726297 163726418 -25553136 + MLT1E3 LTR MaLR 46 170 -454 2123 127 87 14 chr6 163726420 163726767 -25552787 - MER1A DNA MER1_type 0 529 158 402 109 0 0 chr6 163726775 163726830 -25552724 - MER1A DNA MER1_type -472 55 1 577 216 60 96 chr6 163726831 163727081 -25552473 + MLT2C1 LTR ERVL 145 385 -12 208 333 10 31 chr6 163728258 163728354 -25551200 + MIR3 SINE MIR 66 159 -49 1380 270 86 37 chr6 163728617 163728990 -25550564 - L2 LINE L2 -225 3088 2735 1307 189 21 129 chr6 163728990 163729107 -25550447 - MLT1A2 LTR MaLR 0 374 246 2326 101 3 0 chr6 163729107 163729405 -25550149 + AluSg SINE Alu 1 299 -11 1307 189 21 129 chr6 163729405 163729706 -25549848 - MLT1A2 LTR MaLR -128 246 1 1380 270 86 37 chr6 163729706 163730138 -25549416 - L2 LINE L2 -578 2735 2243 306 353 0 10 chr6 163730152 163730254 -25549300 + MIR SINE MIR 20 120 -142 349 235 108 0 chr6 163730256 163730358 -25549196 - L2 LINE L2 -6 3307 3195 252 0 0 0 chr6 163731840 163731868 -25547686 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 7852 21 3 1 chr6 163731868 163733527 -25546027 - L1PA3 LINE L1 -1 6154 4493 2363 100 3 3 chr6 163734493 163734804 -25544750 + AluSp SINE Alu 1 311 -2 298 290 43 29 chr6 163735358 163735496 -25544058 + MIR3 SINE MIR 69 208 0 2403 83 0 17 chr6 163737626 163737926 -25541628 + AluSq SINE Alu 1 295 -18 186 133 0 0 chr6 163738308 163738338 -25541216 + (CACG)n Simple_repeat Simple_repeat 2 31 0 398 307 55 19 chr6 163739930 163740187 -25539367 + L1ME LINE L1 5483 5748 -373 2767 158 75 4 chr6 163740253 163740733 -25538821 + Tigger7 DNA MER2_type 8 521 -1966 425 202 0 32 chr6 163740734 163740828 -25538726 + Tigger7 DNA MER2_type 2397 2487 0 1460 114 65 4 chr6 163740963 163741208 -25538346 - L1MA8 LINE L1 -6 6285 6026 782 203 0 0 chr6 163741220 163741353 -25538201 - FLAM_A SINE Alu 0 133 1 231 198 58 35 chr6 163741383 163741469 -25538085 + L1ME4a LINE L1 6017 6104 -17 827 184 15 0 chr6 163741807 163741943 -25537611 - FRAM SINE Alu -35 141 4 261 0 0 0 chr6 163744860 163744889 -25534665 + (CA)n Simple_repeat Simple_repeat 1 29 0 2125 72 0 4 chr6 163745089 163745354 -25534200 + AluY SINE Alu 36 299 -12 519 323 81 0 chr6 163745953 163746114 -25533440 + MER96 DNA MER1_type? 2 175 0 733 174 31 164 chr6 163746121 163746408 -25533146 + MER112 DNA MER1_type 1 249 -11 2475 148 15 2 chr6 163748122 163748534 -25531020 + L1PB3 LINE L1 5738 6154 0 229 125 0 0 chr6 163748598 163748630 -25530924 + L1MA9 LINE L1 6277 6308 -4 504 0 0 0 chr6 163749908 163749964 -25529590 + (CA)n Simple_repeat Simple_repeat 1 56 0 337 177 0 0 chr6 163750261 163750323 -25529231 + L1MB2 LINE L1 6108 6169 -2 2260 102 0 0 chr6 163751101 163751419 -25528135 + AluSq SINE Alu 1 318 0 237 196 39 0 chr6 163755281 163755332 -25524222 - MIR SINE MIR -119 143 91 1775 140 41 0 chr6 163755377 163755669 -25523885 + AluJb SINE Alu 5 308 -4 286 299 28 9 chr6 163757489 163757596 -25521958 - L2 LINE L2 0 3313 3205 2299 112 0 0 chr6 163757640 163757943 -25521611 + AluSg SINE Alu 5 307 -3 507 195 89 8 chr6 163758401 163758524 -25521030 - MER20 DNA MER1_type 0 219 87 * 3907 108 6 0 chr6 163758519 163759039 -25520515 + MER1A DNA MER1_type 7 529 0 263 298 202 16 chr6 163759867 163759991 -25519563 + L2 LINE L2 3118 3264 -8 2246 75 0 0 chr6 163760605 163760873 -25518681 + AluY SINE Alu 37 304 -7 2263 108 3 16 chr6 163761380 163761694 -25517860 + AluSg SINE Alu 1 310 0 599 89 13 0 chr6 163763506 163763585 -25515969 + MADE1 DNA Mariner 1 80 0 225 0 0 0 chr6 163763618 163763643 -25515911 + (TA)n Simple_repeat Simple_repeat 1 25 0 427 250 1 3 chr6 163763697 163763807 -25515747 + MIR SINE MIR 36 144 -64 204 239 0 0 chr6 163763831 163763877 -25515677 + L2 LINE L2 3215 3260 -12 421 141 55 78 chr6 163770454 163770582 -25508972 + MIR SINE MIR 60 184 -78 622 278 30 55 chr6 163770888 163771157 -25508397 + MIR SINE MIR 3 261 -1 252 0 0 0 chr6 163773254 163773282 -25506272 + (T)n Simple_repeat Simple_repeat 1 28 0 2114 56 0 0 chr6 163775454 163775736 -25503818 + AluY SINE Alu 32 313 0 450 0 0 0 chr6 163776366 163776416 -25503138 + (TG)n Simple_repeat Simple_repeat 2 51 0 2282 105 3 3 chr6 163776723 163777027 -25502527 - AluSx SINE Alu -8 304 1 39 60 0 0 chr6 163777076 163777143 -25502411 + AT_rich Low_complexity Low_complexity 1 67 0 192 283 19 0 chr6 163780025 163780078 -25499476 - L3b LINE CR1 -1 1582 1529 1747 144 44 0 chr6 163780082 163780382 -25499172 + AluSx SINE Alu 1 312 0 2180 105 3 3 chr6 163781230 163781549 -25498005 - AluSq SINE Alu 0 319 1 1151 46 0 0 chr6 163781672 163781803 -25497751 + AluY SINE Alu 1 131 -180 2283 103 13 0 chr6 163781805 163782106 -25497448 + AluSg SINE Alu 1 305 -5 2152 123 10 0 chr6 163782130 163782430 -25497124 + AluSx SINE Alu 1 303 -9 206 230 242 39 chr6 163782513 163782691 -25496863 + MIR SINE MIR 29 242 -20 253 314 122 19 chr6 163783462 163783618 -25495936 + L2 LINE L2 2885 3056 -216 349 255 115 13 chr6 163783768 163783925 -25495629 - L1ME4a LINE L1 -2 6119 5947 670 240 85 58 chr6 163784182 163784545 -25495009 - L1ME4a LINE L1 -218 5903 5531 198 0 0 0 chr6 163786935 163786957 -25492597 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 22 35 0 0 chr6 163787816 163787845 -25491709 + AT_rich Low_complexity Low_complexity 1 29 0 249 228 0 53 chr6 163788243 163788300 -25491254 + L2 LINE L2 3218 3271 -1 708 85 0 0 chr6 163788601 163788695 -25490859 + AluSg/x SINE Alu 217 310 0 280 266 13 0 chr6 163789104 163789183 -25490371 - MER116 DNA Mariner 0 80 1 22 0 0 0 chr6 163789219 163789241 -25490313 + AT_rich Low_complexity Low_complexity 1 22 0 1738 140 30 82 chr6 163789310 163789639 -25489915 - AluJb SINE Alu 0 312 1 273 266 85 0 chr6 163790182 163790276 -25489278 - MIR SINE MIR -146 116 15 26 0 0 0 chr6 163790821 163790847 -25488707 + AT_rich Low_complexity Low_complexity 1 26 0 1867 134 67 0 chr6 163790848 163791131 -25488423 - AluJo SINE Alu -10 302 1 2115 73 0 42 chr6 163791610 163791897 -25487657 + AluSx SINE Alu 18 292 -20 197 0 0 67 chr6 163792277 163792307 -25487247 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1010 88 0 0 chr6 163793085 163793222 -25486332 - AluSc SINE Alu 0 309 173 24 32 0 0 chr6 163793494 163793525 -25486029 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr6 163793821 163793850 -25485704 + AT_rich Low_complexity Low_complexity 1 29 0 1997 127 3 14 chr6 163794864 163795205 -25484349 - AluSx SINE Alu 0 338 1 327 361 0 0 chr6 163795243 163795351 -25484203 + L2 LINE L2 3164 3271 -1 2199 122 0 0 chr6 163796171 163796474 -25483080 + AluSx SINE Alu 1 303 -9 2048 128 3 3 chr6 163797233 163797523 -25482031 + AluSg SINE Alu 1 290 -20 216 0 0 0 chr6 163797653 163797677 -25481877 + (TTA)n Simple_repeat Simple_repeat 2 25 0 603 182 107 0 chr6 163797696 163797817 -25481737 - FRAM SINE Alu -5 171 38 4626 203 32 28 chr6 163797818 163797853 -25481701 + L1MB3 LINE L1 4216 4249 -1934 333 0 0 0 chr6 163797853 163797890 -25481664 + (CA)n Simple_repeat Simple_repeat 2 38 0 4626 203 32 28 chr6 163797890 163799815 -25479739 + L1MB3 LINE L1 4249 6183 0 250 188 0 43 chr6 163800600 163800669 -25478885 + L1MC4 LINE L1 6638 6703 -1339 366 283 0 0 chr6 163800706 163800798 -25478756 + L1MC4 LINE L1 6612 6703 -1339 1763 148 13 36 chr6 163800803 163801107 -25478447 - AluJb SINE Alu -15 297 1 2126 119 13 0 chr6 163801320 163801622 -25477932 + AluSq SINE Alu 1 306 -7 276 313 0 3 chr6 163802100 163802180 -25477374 + MIR SINE MIR 77 154 -67 2000 149 0 7 chr6 163802780 163803081 -25476473 - AluJb SINE Alu -12 300 2 366 256 56 113 chr6 163803560 163803826 -25475728 - L3b LINE CR1 -172 1411 1161 674 191 89 107 chr6 163804110 163804283 -25475271 + LTR16A1 LTR ERVL 237 407 -50 2010 171 85 8 chr6 163804283 163804681 -25474873 + MSTB1 LTR MaLR 4 432 0 674 191 89 107 chr6 163804681 163804732 -25474822 + LTR16A1 LTR ERVL 407 457 0 2512 74 0 0 chr6 163804754 163805052 -25474502 + AluSx SINE Alu 3 300 -12 1018 183 0 0 chr6 163805052 163805216 -25474338 + AluJb SINE Alu 134 297 -15 4789 155 15 4 chr6 163805757 163806536 -25473018 + Tigger1 DNA MER2_type 1 788 -1630 534 198 0 10 chr6 163806567 163806663 -25472891 + Tigger1 DNA MER2_type 2322 2416 -2 1847 104 37 15 chr6 163807396 163807666 -25471888 - AluSx SINE Alu -7 305 30 2299 106 3 0 chr6 163808392 163808695 -25470859 + AluSq SINE Alu 1 304 -9 4825 103 9 4 chr6 163809046 163809744 -25469810 - L1MA3 LINE L1 -145 6160 5460 2338 99 3 0 chr6 163809744 163810048 -25469506 + AluSx SINE Alu 1 305 -7 1089 123 0 0 chr6 163810048 163810202 -25469352 + AluSg/x SINE Alu 134 287 -25 5626 161 31 21 chr6 163810202 163811031 -25468523 - L1MA3 LINE L1 -743 5403 4556 1628 138 14 33 chr6 163811031 163811307 -25468247 - AluSx SINE Alu -7 305 35 5626 161 31 21 chr6 163811307 163811785 -25467769 - L1MA3 LINE L1 -1590 4556 4084 1310 136 18 53 chr6 163811785 163812013 -25467541 + Tigger7 DNA MER2_type 2368 2587 0 787 205 44 70 chr6 163812111 163812484 -25467070 + MSTD LTR MaLR 3 396 0 1807 189 0 0 chr6 163812869 163813165 -25466389 + AluJb SINE Alu 1 296 -16 2187 123 0 3 chr6 163814189 163814498 -25465056 + AluSx SINE Alu 3 310 -2 220 159 0 45 chr6 163815224 163815268 -25464286 + CT-rich Low_complexity Low_complexity 6 47 0 270 56 0 0 chr6 163816327 163816363 -25463191 + (A)n Simple_repeat Simple_repeat 1 36 0 2282 123 0 0 chr6 163817685 163817995 -25461559 - AluSg SINE Alu 0 310 1 1673 174 17 7 chr6 163817997 163818284 -25461270 - AluJo SINE Alu -16 296 7 394 243 158 31 chr6 163818379 163818601 -25460953 - MIR SINE MIR -2 260 11 433 185 17 50 chr6 163818792 163818911 -25460643 - L1ME LINE L1 -301 5820 5706 * 463 210 171 15 chr6 163818903 163819108 -25460446 + L1ME4a LINE L1 5832 6068 -53 417 263 15 124 chr6 163819685 163819795 -25459759 - Charlie8 DNA MER1_type -104 237 169 2296 96 7 0 chr6 163819795 163820086 -25459468 - AluSx SINE Alu -19 293 1 417 263 15 124 chr6 163820086 163820234 -25459320 - Charlie8 DNA MER1_type -172 169 7 1872 126 0 0 chr6 163820391 163820652 -25458902 + AluSx SINE Alu 48 308 -4 1058 175 14 63 chr6 163820939 163821162 -25458392 + AluJo SINE Alu 72 283 -29 201 238 0 0 chr6 163821825 163821867 -25457687 + GA-rich Low_complexity Low_complexity 2 43 0 2156 111 30 0 chr6 163822174 163822471 -25457083 - AluSx SINE Alu -6 306 1 270 326 0 0 chr6 163823727 163823816 -25455738 - L2 LINE L2 0 3313 3225 553 284 180 27 chr6 163823875 163824241 -25455313 - L2 LINE L2 -861 2453 2032 2247 92 10 0 chr6 163824299 163824593 -25454961 + AluSx SINE Alu 1 297 -15 237 132 0 0 chr6 163825427 163825465 -25454089 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 294 224 58 121 chr6 163826057 163826231 -25453323 + MER96 DNA MER1_type? 1 163 -12 293 311 17 0 chr6 163826591 163826710 -25452844 + MIR SINE MIR 141 261 -1 283 318 12 0 chr6 163827642 163827727 -25451827 - L3b LINE CR1 -227 1356 1271 379 330 72 0 chr6 163827783 163828004 -25451550 + MIR SINE MIR 13 249 -13 360 0 0 0 chr6 163828717 163828757 -25450797 + (TG)n Simple_repeat Simple_repeat 2 41 0 1605 168 20 27 chr6 163828761 163829058 -25450496 - AluJo SINE Alu -17 295 1 289 218 68 75 chr6 163829263 163829410 -25450144 + MLT1J LTR MaLR 14 159 -352 237 274 162 17 chr6 163829526 163829643 -25449911 + MLT1J LTR MaLR 283 416 -95 2101 108 13 20 chr6 163829758 163830064 -25449490 + THE1C LTR MaLR 72 375 0 337 268 14 92 chr6 163830182 163830324 -25449230 - MIR SINE MIR -62 146 16 224 420 0 0 chr6 163830311 163830399 -25449155 + L2 LINE L2 3139 3226 -46 * 1787 132 3 31 chr6 163830839 163831159 -25448395 - AluJb SINE Alu 0 315 4 329 286 65 13 chr6 163832458 163832612 -25446942 - MER5B DNA MER1_type -16 162 1 1232 271 104 35 chr6 163833264 163833883 -25445671 + MLT2F LTR ERVL 1 662 -1 321 280 154 14 chr6 163834192 163834335 -25445219 + MIR SINE MIR 48 210 -52 259 349 175 11 chr6 163835054 163835243 -25444311 - MIR SINE MIR -19 243 24 238 289 24 0 chr6 163835334 163835417 -25444137 - MIR3 SINE MIR -24 184 100 186 43 0 0 chr6 163836083 163836106 -25443448 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 780 155 0 0 chr6 163836108 163836224 -25443330 - FLAM_A SINE Alu -17 116 1 193 306 0 32 chr6 163836542 163836604 -25442950 - L2 LINE L2 -8 3305 3246 499 258 18 30 chr6 163836773 163836940 -25442614 - MIR SINE MIR -96 166 2 2260 173 12 83 chr6 163837636 163838054 -25441500 + MSTB2 LTR MaLR 1 447 -10 2436 88 3 0 chr6 163838054 163838359 -25441195 + AluSp SINE Alu 1 306 -7 2260 173 12 83 chr6 163838359 163838371 -25441183 + MSTB2 LTR MaLR 447 395 -62 2136 122 27 3 chr6 163838371 163838666 -25440888 + AluSx SINE Alu 1 302 -10 2260 173 12 83 chr6 163838666 163838726 -25440828 + MSTB2 LTR MaLR 394 457 0 363 96 0 0 chr6 163839573 163839625 -25439929 + (CA)n Simple_repeat Simple_repeat 2 53 0 896 134 6 0 chr6 163839970 163840127 -25439427 + (GGA)n Simple_repeat Simple_repeat 2 159 0 590 275 122 0 chr6 163840833 163841055 -25438499 + MIR SINE MIR 14 262 0 2685 55 0 0 chr6 163841333 163841644 -25437910 + AluY SINE Alu 1 311 0 4007 140 6 20 chr6 163842396 163843040 -25436514 + MER41B LTR ERV1 1 635 0 587 235 7 0 chr6 163844091 163844227 -25435327 + L1MC4 LINE L1 7165 7301 -741 269 103 59 0 chr6 163844227 163844295 -25435259 + (TA)n Simple_repeat Simple_repeat 2 73 0 601 208 26 39 chr6 163844298 163844452 -25435102 + L1MC4a LINE L1 7214 7353 -455 207 0 0 0 chr6 163844574 163844597 -25434957 + (T)n Simple_repeat Simple_repeat 1 23 0 452 228 46 131 chr6 163844624 163844670 -25434884 + L1MC4 LINE L1 7688 7736 -306 2180 110 3 10 chr6 163844670 163844978 -25434576 + AluSx SINE Alu 6 311 -1 452 228 46 131 chr6 163844978 163845168 -25434386 + L1MC4 LINE L1 7736 7904 -138 242 243 0 93 chr6 163845236 163845336 -25434218 + L1MC4a LINE L1 7711 7802 -6 1465 167 47 67 chr6 163845336 163845636 -25433918 - AluJb SINE Alu -18 294 1 2405 89 0 0 chr6 163847951 163848244 -25431310 - AluSc SINE Alu -16 293 1 336 272 0 19 chr6 163848874 163848977 -25430577 + L1MB2 LINE L1 6055 6155 -16 210 105 0 0 chr6 163848977 163849015 -25430539 + (T)n Simple_repeat Simple_repeat 1 38 0 717 217 68 6 chr6 163850008 163850169 -25429385 - FAM SINE Alu -4 171 1 1105 233 119 35 chr6 163850855 163851204 -25428350 - MLT1G LTR MaLR 0 590 157 1802 129 0 53 chr6 163851204 163851506 -25428048 - AluJb SINE Alu 0 312 27 1105 233 119 35 chr6 163851506 163851676 -25427878 - MLT1G LTR MaLR -433 157 3 700 224 0 24 chr6 163851900 163852070 -25427484 - L1MC5 LINE L1 -50 7911 7746 2042 117 0 57 chr6 163852343 163852659 -25426895 - AluSg SINE Alu -11 299 2 757 154 8 0 chr6 163852701 163852818 -25426736 - FLAM_C SINE Alu -25 118 1 2574 65 3 0 chr6 163853366 163853676 -25425878 + AluY SINE Alu 1 311 0 30 103 0 0 chr6 163853799 163853906 -25425648 + AT_rich Low_complexity Low_complexity 1 107 0 2002 121 40 0 chr6 163854048 163854345 -25425209 + AluSg SINE Alu 1 309 -1 21 36 0 0 chr6 163854411 163854439 -25425115 + AT_rich Low_complexity Low_complexity 1 28 0 2166 108 7 0 chr6 163855469 163855764 -25423790 + AluSp SINE Alu 4 300 -13 2150 109 10 0 chr6 163856243 163856536 -25423018 + AluSx SINE Alu 1 296 -16 431 196 41 10 chr6 163856924 163857021 -25422533 + MER5A DNA MER1_type 10 109 -80 2102 128 0 0 chr6 163857109 163857399 -25422155 + AluSx SINE Alu 1 290 -22 1611 194 26 10 chr6 163857968 163858272 -25421282 - AluJo SINE Alu -3 309 1 1104 109 46 46 chr6 163858328 163858502 -25421052 - AluJb SINE Alu -3 309 136 2174 110 10 10 chr6 163859093 163859394 -25420160 - AluSq SINE Alu -12 301 1 1829 129 3 50 chr6 163860586 163860888 -25418666 - AluSx SINE Alu -24 288 1 349 293 116 18 chr6 163861184 163861348 -25418206 + L3 LINE CR1 1047 1226 -351 2157 101 0 11 chr6 163861504 163861814 -25417740 - AluSq SINE Alu 0 307 1 613 159 71 0 chr6 163861885 163861998 -25417556 + AluSg/x SINE Alu 177 297 -15 302 145 32 0 chr6 163861998 163862060 -25417494 + G-rich Low_complexity Low_complexity 2 65 0 708 125 250 7 chr6 163862766 163862918 -25416636 - MER5A DNA MER1_type 0 189 1 658 213 6 58 chr6 163863071 163863216 -25416338 + FRAM SINE Alu 1 137 -165 1796 139 50 40 chr6 163863216 163863517 -25416037 + AluSx SINE Alu 1 304 -8 658 213 6 58 chr6 163863517 163863545 -25416009 + FRAM SINE Alu 137 165 -1 254 297 144 8 chr6 163863954 163864072 -25415482 - L2 LINE L2 -1 3271 3138 2462 57 0 0 chr6 163864504 163864812 -25414742 + AluSc SINE Alu 1 308 0 241 257 63 91 chr6 163866023 163866137 -25413417 + L1ME LINE L1 5532 5641 -480 2271 119 0 0 chr6 163866137 163866440 -25413114 + AluSx SINE Alu 1 303 -9 241 257 63 91 chr6 163866440 163866500 -25413054 + L1ME LINE L1 5641 5701 -420 1711 101 0 13 chr6 163866507 163866884 -25412670 - AluSx SINE Alu 0 432 59 4561 148 25 76 chr6 164068130 164069006 -25210548 - L1MB8 LINE L1 0 6178 5259 2469 50 0 10 chr6 164069006 164069306 -25210248 - AluY SINE Alu -14 297 1 4561 148 25 76 chr6 164069306 164069325 -25210229 - L1MB8 LINE L1 -919 5259 5241 2046 102 0 4 chr6 164069325 164069600 -25209954 - L1PB1 LINE L1 -4 6147 5874 4561 148 25 76 chr6 164069600 164069708 -25209846 - L1MB8 LINE L1 -937 5241 5221 1211 72 24 18 chr6 164070488 164070654 -25208900 + THE1C LTR MaLR 1 167 -208 27 29 0 0 chr6 164070730 164070764 -25208790 + AT_rich Low_complexity Low_complexity 1 34 0 3187 34 3 0 chr6 164070873 164071230 -25208324 - L1PA5 LINE L1 -6 6148 5791 1468 106 10 0 chr6 164071230 164071438 -25208116 + THE1C LTR MaLR 166 375 0 798 189 0 0 chr6 164072044 164072171 -25207383 - FRAM SINE Alu -48 128 2 211 200 0 0 chr6 164072797 164072842 -25206712 - L2 LINE L2 -1 3312 3268 316 342 40 13 chr6 164072859 164073008 -25206546 + MIR SINE MIR 20 172 -90 239 238 16 16 chr6 164074056 164074119 -25205435 + MIR3 SINE MIR 98 160 -48 2404 57 0 7 chr6 164074268 164074567 -25204987 + AluY SINE Alu 15 311 0 2465 67 0 0 chr6 164074584 164074882 -25204672 + AluY SINE Alu 8 305 -6 265 301 124 10 chr6 164075381 164075574 -25203980 - L3 LINE CR1 -159 1418 1204 336 24 0 0 chr6 164075716 164075757 -25203797 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 337 265 49 10 chr6 164075814 164075916 -25203638 + L1M LINE L1 5288 5393 -771 6412 149 31 7 chr6 164077549 164079503 -25200051 - L1PB4 LINE L1 0 6156 4149 2668 188 125 40 chr6 164079503 164080206 -25199348 - MER11C LTR ERVK 0 1071 309 1833 164 3 0 chr6 164080208 164080526 -25199028 - L1 LINE L1 -1227 4919 4601 2622 63 42 0 chr6 164080526 164080857 -25198697 - MER11B LTR ERVK -891 345 1 1586 154 4 0 chr6 164080857 164081130 -25198424 - L1PB4 LINE L1 -1992 4154 3881 205 177 65 0 chr6 164081346 164081408 -25198146 + (CTCA)n Simple_repeat Simple_repeat 3 68 0 204 320 0 0 chr6 164081467 164081517 -25198037 - L2 LINE L2 -1 3312 3263 409 248 270 0 chr6 164081705 164081842 -25197712 - MER5B DNA MER1_type -4 174 1 543 255 168 0 chr6 164081983 164082132 -25197422 - MER5A DNA MER1_type -7 182 9 251 154 103 13 chr6 164082695 164082773 -25196781 - L1ME4a LINE L1 -9 6112 6028 569 287 112 32 chr6 164082795 164083390 -25196164 - L1ME4a LINE L1 -224 5897 5255 376 320 25 8 chr6 164084429 164084551 -25195003 + MIR3 SINE MIR 3 126 -82 318 26 0 0 chr6 164084754 164084793 -25194761 + (TG)n Simple_repeat Simple_repeat 2 40 0 375 264 111 43 chr6 164085232 164085467 -25194087 - L2 LINE L2 -180 3092 2842 2116 119 3 3 chr6 164087437 164087732 -25191822 - AluSx SINE Alu -17 295 1 2282 107 0 3 chr6 164088187 164088485 -25191069 + AluSq SINE Alu 1 297 -16 425 211 224 41 chr6 164088821 164089067 -25190487 + Charlie2 DNA MER1_type 40 330 -2532 * 1468 230 200 12 chr6 164089057 164089280 -25190274 + Charlie2 DNA MER1_type 1855 2035 -827 186 71 0 0 chr6 164089280 164089308 -25190246 + (TA)n Simple_repeat Simple_repeat 1 28 0 1468 230 200 12 chr6 164089308 164089675 -25189879 + Charlie2 DNA MER1_type 2035 2556 -306 2232 101 3 10 chr6 164089746 164090044 -25189510 + AluSx SINE Alu 1 296 -16 238 309 0 0 chr6 164090224 164090292 -25189262 - MER69 DNA AcHobo -11 2515 2448 764 275 59 13 chr6 164090304 164090540 -25189014 - MER69 DNA AcHobo -2279 247 1 2200 95 0 33 chr6 164090636 164090941 -25188613 - AluSx SINE Alu -17 295 1 2008 162 6 17 chr6 164092453 164092558 -25186996 + MER7A DNA MER2_type 2 107 -2931 2133 108 0 30 chr6 164092558 164092863 -25186691 - AluSx SINE Alu -16 296 1 2008 162 6 17 chr6 164092863 164093103 -25186451 + MER7A DNA MER2_type 107 341 -5 413 284 37 8 chr6 164094734 164094868 -25184686 - MER103 DNA DNA -7 159 22 265 236 0 0 chr6 164095083 164095138 -25184416 - L1MC4 LINE L1 -1340 6702 6648 14756 122 29 48 chr6 164095161 164095285 -25184269 + Tigger1 DNA MER2_type 1 126 -2292 3455 87 2 9 chr6 164095285 164095743 -25183811 - L1PA13 LINE L1 0 6163 5709 14756 122 29 48 chr6 164095743 164097465 -25182089 + Tigger1 DNA MER2_type 126 1791 -627 2418 74 0 7 chr6 164097465 164097763 -25181791 - AluSx SINE Alu -16 296 1 14756 122 29 48 chr6 164097763 164098369 -25181185 + Tigger1 DNA MER2_type 1791 2407 -11 245 276 179 8 chr6 164098885 164099008 -25180546 - MIR3 SINE MIR -48 160 17 899 280 76 17 chr6 164099016 164099476 -25180078 + MER113 DNA MER1_type? 6 492 -29 300 192 0 0 chr6 164099685 164099737 -25179817 + L2 LINE L2 3217 3268 -4 1825 135 31 0 chr6 164099938 164100227 -25179327 + AluSx SINE Alu 1 298 -14 470 303 43 19 chr6 164100326 164100488 -25179066 + MIR SINE MIR 47 212 -50 6558 93 31 1 chr6 164101227 164102835 -25176719 - L1PA11 LINE L1 -1 6173 4519 2415 141 6 3 chr6 164102984 164103338 -25176216 - THE1A LTR MaLR 0 355 1 489 165 44 0 chr6 164104267 164104358 -25175196 + MER5A DNA MER1_type 7 101 -88 186 43 0 0 chr6 164104437 164104460 -25175094 + (TC)n Simple_repeat Simple_repeat 2 24 0 279 0 0 0 chr6 164104464 164104495 -25175059 + (CA)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr6 164104500 164104523 -25175031 + AT_rich Low_complexity Low_complexity 1 23 0 1276 152 24 149 chr6 164104573 164104909 -25174645 - AluYb8 SINE Alu -24 294 1 265 296 102 9 chr6 164105276 164105384 -25174170 + L2 LINE L2 3185 3302 -11 975 241 33 21 chr6 164105617 164105935 -25173619 + LTR16A LTR ERVL 62 382 -75 995 172 141 0 chr6 164106106 164106298 -25173256 + MER20 DNA MER1_type 1 219 0 474 295 56 30 chr6 164107872 164108140 -25171414 + L1ME4a LINE L1 5611 5885 -236 303 208 117 25 chr6 164108179 164108299 -25171255 + L1ME4a LINE L1 5991 6121 0 420 235 42 0 chr6 164108329 164108448 -25171106 - L1ME3A LINE L1 -26 6144 6021 319 139 0 0 chr6 164108510 164108553 -25171001 - Tigger3(Golem) DNA MER2_type -1 3028 2986 1007 189 17 0 chr6 164108554 164108729 -25170825 - Tigger3(Golem) DNA MER2_type -2816 213 36 1432 229 60 16 chr6 164108735 164109101 -25170453 - L1ME3A LINE L1 -248 5922 5541 2208 87 4 0 chr6 164111382 164111659 -25167895 + AluSg SINE Alu 27 304 -6 2029 124 34 0 chr6 164111806 164112104 -25167450 - AluSx SINE Alu -4 308 1 1034 174 0 0 chr6 164112141 164112334 -25167220 + FRAM SINE Alu 1 192 0 451 281 97 86 chr6 164112476 164112920 -25166634 - L2 LINE L2 0 3272 2824 2155 106 0 0 chr6 164113863 164114181 -25165373 - AluSx SINE Alu 0 318 1 213 132 0 0 chr6 164114916 164114954 -25164600 + (TC)n Simple_repeat Simple_repeat 2 39 0 269 309 81 7 chr6 164115191 164115340 -25164214 + MIR SINE MIR 85 244 -18 180 0 0 0 chr6 164115786 164115806 -25163748 + (T)n Simple_repeat Simple_repeat 1 20 0 637 286 30 92 chr6 164116162 164116532 -25163022 - L1MEd LINE L1 -5340 1591 1245 524 254 86 0 chr6 164116654 164116866 -25162688 - L1MEd LINE L1 -5855 1076 845 298 362 27 10 chr6 164116885 164117028 -25162526 + MIR SINE MIR 16 150 -58 440 233 25 8 chr6 164117090 164117210 -25162344 + LTR16A1 LTR ERVL 1 122 -335 315 133 0 0 chr6 164117215 164117260 -25162294 + LTR16A1 LTR ERVL 413 457 0 609 261 224 44 chr6 164118430 164119095 -25160459 + L2 LINE L2 2491 3272 0 201 94 0 0 chr6 164119820 164119852 -25159702 + (TA)n Simple_repeat Simple_repeat 1 32 0 2022 102 24 24 chr6 164121355 164121650 -25157904 - AluSx SINE Alu -17 295 1 1259 203 30 52 chr6 164121709 164122039 -25157515 - MSTD LTR MaLR -73 323 1 213 277 215 0 chr6 164122376 164122486 -25157068 + MIR SINE MIR 19 153 -78 2260 157 19 26 chr6 164123671 164124048 -25155506 + MLT1A2 LTR MaLR 1 374 0 1389 231 58 40 chr6 164124151 164124596 -25154958 - L1MEd LINE L1 -5955 468 16 321 227 13 0 chr6 164124592 164124667 -25154887 - L1MC4a LINE L1 -1088 6720 6645 * 191 286 0 0 chr6 164124748 164124797 -25154757 - L3 LINE CR1 -6 1571 1523 954 242 128 57 chr6 164126083 164126502 -25153052 - MLT1H LTR MaLR -13 536 19 399 254 113 0 chr6 164126516 164126658 -25152896 - MLT1H1 LTR MaLR -2 553 396 692 301 56 34 chr6 164126673 164126939 -25152615 - MLT1H1 LTR MaLR -277 278 7 2080 200 99 48 chr6 164127393 164127908 -25151646 - MLT1F LTR MaLR -1 541 1 2392 88 0 0 chr6 164128397 164128691 -25150863 - AluSg SINE Alu -16 294 1 748 261 129 26 chr6 164130001 164130311 -25149243 + L1MC4a LINE L1 5707 6048 -1760 234 197 82 0 chr6 164130520 164130581 -25148973 + L2 LINE L2 3248 3313 0 282 309 51 46 chr6 164131965 164132140 -25147414 - MER5A DNA MER1_type -7 182 7 512 250 0 0 chr6 164132242 164132350 -25147204 + MER58A DNA MER1_type 3 110 0 * 2919 106 33 26 chr6 164132342 164132930 -25146624 - MER4E LTR ERV1 0 766 1 733 115 90 16 chr6 164132930 164133046 -25146508 + MER58A DNA MER1_type 100 224 0 4627 217 77 78 chr6 164135189 164135580 -25143974 - L1MD3 LINE L1 -2 8039 7649 2495 63 0 10 chr6 164135580 164135880 -25143674 + AluY SINE Alu 1 297 -14 4627 217 77 78 chr6 164135880 164135967 -25143587 - L1MD3 LINE L1 -392 7649 7563 2393 92 0 9 chr6 164135967 164136282 -25143272 - AluSx SINE Alu 0 312 1 4627 217 77 78 chr6 164136282 164137398 -25142156 - L1MD3 LINE L1 -478 7563 6458 28 48 0 0 chr6 164137878 164137920 -25141634 + AT_rich Low_complexity Low_complexity 1 42 0 3511 8 0 0 chr6 164139691 164140079 -25139475 - L1HS LINE L1 0 6155 5768 2062 122 3 7 chr6 164141128 164141423 -25138131 - AluSx SINE Alu -16 296 3 1857 132 227 62 chr6 164141651 164142083 -25137471 - MLT1D LTR MaLR 0 505 3 2010 136 24 0 chr6 164142354 164142648 -25136906 + AluSx SINE Alu 1 301 -11 279 0 0 0 chr6 164143244 164143275 -25136279 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 643 216 210 6 chr6 164143529 164143696 -25135858 + MIR SINE MIR 18 218 -44 185 239 22 0 chr6 164143761 164143807 -25135747 - L2 LINE L2 -4 3268 3222 468 0 0 0 chr6 164144154 164144206 -25135348 + (TGGA)n Simple_repeat Simple_repeat 2 53 0 217 295 95 0 chr6 164144519 164144624 -25134930 + L2 LINE L2 2513 2627 -687 285 232 0 0 chr6 164145552 164145608 -25133946 - MIR3 SINE MIR -2 206 151 1711 140 68 10 chr6 164145681 164145988 -25133566 + L1MB3 LINE L1 5855 6179 -4 188 146 0 42 chr6 164146034 164146082 -25133472 + (GAAAA)n Simple_repeat Simple_repeat 1 46 0 393 292 85 8 chr6 164146262 164146392 -25133162 - MIR3 SINE MIR -53 155 16 418 296 0 8 chr6 164146523 164146655 -25132899 - MIR SINE MIR -5 257 127 957 179 17 12 chr6 164146655 164146828 -25132726 + FRAM SINE Alu 1 167 -9 255 212 94 71 chr6 164146830 164146915 -25132639 - MIR SINE MIR -128 134 48 1765 128 20 0 chr6 164147016 164147267 -25132287 - AluSx SINE Alu -19 293 38 1729 183 3 0 chr6 164148219 164148520 -25131034 + AluJb SINE Alu 1 302 -10 1818 174 20 0 chr6 164149466 164149771 -25129783 + AluJb SINE Alu 1 311 -1 281 309 53 0 chr6 164149771 164149865 -25129689 - L2 LINE L2 -18 3254 3156 1329 201 85 22 chr6 164150080 164150399 -25129155 - MER2 DNA MER2_type -6 339 1 317 232 104 48 chr6 164151498 164151623 -25127931 + MIR3 SINE MIR 56 187 -21 1090 252 83 48 chr6 164152606 164152701 -25126853 - L2 LINE L2 -4 3309 3219 1743 157 71 24 chr6 164152701 164152995 -25126559 - AluJb SINE Alu -4 308 1 1090 252 83 48 chr6 164152995 164153383 -25126171 - L2 LINE L2 -94 3219 2809 322 200 57 0 chr6 164153479 164153549 -25126005 - MER5A DNA MER1_type -86 103 30 760 152 0 76 chr6 164153627 164153759 -25125795 + FLAM_C SINE Alu 2 123 -20 215 221 125 73 chr6 164153764 164153900 -25125654 - L2 LINE L2 -609 2705 2563 189 315 37 0 chr6 164154063 164154117 -25125437 - MER5A DNA MER1_type -6 183 128 1637 166 225 19 chr6 164154119 164154541 -25125013 + LTR54 LTR ERV1 2 510 0 314 200 84 84 chr6 164154541 164154613 -25124941 - MER5A DNA MER1_type -86 103 32 329 301 16 124 chr6 164154613 164154806 -25124748 + MER5B DNA MER1_type 4 175 -3 301 313 121 17 chr6 164154834 164154981 -25124573 - MIR SINE MIR -92 116 3 320 261 58 29 chr6 164155036 164155174 -25124380 - LTR33A LTR ERVL 0 523 382 1137 173 4 148 chr6 164155514 164155792 -25123762 + MER8 DNA MER2_type 1 238 -1 1995 145 0 3 chr6 164156836 164157139 -25122415 + AluSx SINE Alu 1 302 -10 323 218 27 44 chr6 164158581 164158683 -25120871 - MIR SINE MIR -57 151 48 222 356 35 11 chr6 164158844 164158931 -25120623 + L2 LINE L2 3180 3268 -4 667 290 60 0 chr6 164159196 164159396 -25120158 - MIR SINE MIR -3 259 48 613 220 47 13 chr6 164159427 164159577 -25119977 - L1ME2 LINE L1 -9 6155 6001 27 49 0 0 chr6 164159611 164159652 -25119902 + AT_rich Low_complexity Low_complexity 1 41 0 3365 149 74 30 chr6 164159673 164160332 -25119222 - L1PA16 LINE L1 0 6166 5479 2034 178 17 75 chr6 164160315 164160794 -25118760 - L1ME2 LINE L1 -220 5944 5494 * 7331 22 0 0 chr6 164160829 164161648 -25117906 + L1PA3 LINE L1 5361 6179 0 242 356 44 0 chr6 164161655 164161745 -25117809 + L2 LINE L2 3141 3234 -38 1025 221 50 69 chr6 164162125 164162442 -25117112 - MLT1E LTR MaLR 0 593 283 1002 133 20 0 chr6 164162445 164162596 -25116958 - MER73 LTR ERVL 0 644 491 289 180 0 33 chr6 164162593 164162654 -25116900 - MLT1E LTR MaLR -527 66 8 * 2444 81 0 0 chr6 164163404 164163699 -25115855 + AluSc SINE Alu 1 295 -14 2280 235 35 4 chr6 164163762 164164277 -25115277 - MLT2B3 LTR ERVL -19 535 5 2339 107 67 14 chr6 164164510 164164866 -25114688 - THE1C LTR MaLR 0 375 1 196 233 0 0 chr6 164164981 164165024 -25114530 - MIR SINE MIR -24 238 196 498 196 36 0 chr6 164165057 164165169 -25114385 + LTR37B LTR ERV1 349 464 -4 603 289 30 0 chr6 164165172 164165338 -25114216 - MIR SINE MIR -88 174 4 217 254 18 0 chr6 164166272 164166327 -25113227 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 474 314 114 49 chr6 164167652 164167958 -25111596 + L2 LINE L2 2945 3270 -2 6399 77 18 14 chr6 164167969 164168851 -25110703 - L1PA10 LINE L1 -1 6167 5282 2228 110 36 33 chr6 164169892 164170255 -25109299 - THE1B LTR MaLR 0 364 1 2193 104 0 4 chr6 164171025 164171331 -25108223 - AluSg SINE Alu 0 305 1 266 118 97 11 chr6 164171961 164172054 -25107500 + (TA)n Simple_repeat Simple_repeat 2 102 0 195 308 158 8 chr6 164172558 164172690 -25106864 - MIR3 SINE MIR -39 169 10 665 99 0 0 chr6 164172705 164172796 -25106758 + AluSg/x SINE Alu 207 297 -12 1451 162 66 94 chr6 164173086 164173512 -25106042 - MLT2A2 LTR ERVL -2 451 38 42212 62 4 2 chr6 164173513 164179642 -25099912 - L1PA5 LINE L1 0 6154 11 384 93 0 0 chr6 164179648 164179702 -25099852 - MLT2A2 LTR ERVL -398 55 2 450 0 0 0 chr6 164180679 164180729 -25098825 + (TG)n Simple_repeat Simple_repeat 1 50 0 285 221 0 0 chr6 164181009 164181077 -25098477 + (TA)n Simple_repeat Simple_repeat 2 69 0 199 330 125 50 chr6 164181385 164181585 -25097969 + MIR SINE MIR 26 240 -22 387 0 0 0 chr6 164182300 164182343 -25097211 + (CA)n Simple_repeat Simple_repeat 2 44 0 1957 115 107 30 chr6 164182495 164182833 -25096721 + THE1B LTR MaLR 1 364 0 215 299 35 11 chr6 164182927 164183014 -25096540 - L3 LINE CR1 -4 1573 1485 245 296 71 0 chr6 164183990 164184088 -25095466 - MIR SINE MIR -88 174 70 342 0 0 0 chr6 164185119 164185157 -25094397 + (CA)n Simple_repeat Simple_repeat 1 38 0 831 221 67 69 chr6 164185958 164186373 -25093181 + MLT1A2 LTR MaLR 1 395 -1 224 258 48 0 chr6 164186373 164186435 -25093119 + L2 LINE L2 3201 3265 -7 326 285 77 57 chr6 164186632 164186878 -25092676 - MARNA DNA Mariner -98 488 238 243 335 26 26 chr6 164186897 164187052 -25092502 + MIR3 SINE MIR 36 190 -18 2106 193 92 15 chr6 164187584 164188051 -25091503 - MLT1D LTR MaLR -2 503 1 244 287 160 5 chr6 164188632 164188820 -25090734 + MIR SINE MIR 14 230 -32 26 30 0 0 chr6 164190416 164190449 -25089105 + AT_rich Low_complexity Low_complexity 1 33 0 2239 107 0 3 chr6 164190536 164190834 -25088720 + AluSx SINE Alu 1 297 -15 236 250 12 50 chr6 164190882 164190962 -25088592 - MIR SINE MIR -3 259 183 26 23 0 23 chr6 164190971 164191000 -25088554 + AT_rich Low_complexity Low_complexity 1 30 -13 2334 117 87 22 chr6 164191000 164191402 -25088152 - MSTA LTR MaLR 0 428 1 26 23 0 23 chr6 164191402 164191416 -25088138 + AT_rich Low_complexity Low_complexity 30 43 0 370 357 8 8 chr6 164191430 164191556 -25087998 - MIR SINE MIR -110 152 27 206 295 0 38 chr6 164193557 164193740 -25085814 + (TG)n Simple_repeat Simple_repeat 1 176 0 542 254 36 12 chr6 164194460 164194625 -25084929 + MER5B DNA MER1_type 1 169 -9 228 274 21 74 chr6 164194711 164194806 -25084748 - MIR SINE MIR -10 252 163 2056 151 0 22 chr6 164194953 164195272 -25084282 - AluSx SINE Alu 0 312 1 2388 98 0 0 chr6 164195765 164196062 -25083492 + AluY SINE Alu 1 297 -14 2485 88 0 0 chr6 164197221 164197526 -25082028 + AluSq SINE Alu 1 305 -8 224 242 65 0 chr6 164197578 164197640 -25081914 + GA-rich Low_complexity Low_complexity 2 67 0 215 197 183 0 chr6 164197788 164197859 -25081695 + MIR SINE MIR 175 258 -4 266 282 24 0 chr6 164198328 164198413 -25081141 - L2 LINE L2 -975 2339 2253 423 342 21 5 chr6 164198556 164198743 -25080811 - MIR SINE MIR -1 261 72 2466 76 0 3 chr6 164198867 164199168 -25080386 + AluSx SINE Alu 1 300 -12 587 264 250 34 chr6 164199275 164200139 -25079415 - L2 LINE L2 -1 3312 2253 450 297 66 11 chr6 164201213 164201395 -25078159 + MIR SINE MIR 65 256 -6 449 204 261 7 chr6 164201562 164201704 -25077850 + MER5A DNA MER1_type 12 189 0 2369 115 102 8 chr6 164203028 164203419 -25076135 - MSTA LTR MaLR 0 428 1 567 330 39 4 chr6 164203454 164203687 -25075867 + MIR SINE MIR 22 262 0 187 298 35 0 chr6 164204021 164204078 -25075476 - MIR3 SINE MIR -138 70 12 1065 167 16 0 chr6 164204078 164204264 -25075290 - MER5A DNA MER1_type 0 189 1 605 296 31 27 chr6 164206447 164206670 -25072884 - MIR SINE MIR -26 236 13 416 114 29 14 chr6 164206782 164206852 -25072702 - Looper DNA T2_type 0 1558 1488 3179 207 10 15 chr6 164206854 164207535 -25072019 - Looper DNA T2_type -503 1055 378 987 207 20 0 chr6 164207538 164207736 -25071818 - MER3 DNA MER1_type -3 206 5 1829 158 10 43 chr6 164207740 164208138 -25071416 - Looper DNA T2_type -1173 385 1 22 0 0 0 chr6 164208178 164208200 -25071354 + AT_rich Low_complexity Low_complexity 1 22 0 186 162 103 59 chr6 164208314 164208382 -25071172 + MIR SINE MIR 183 253 -9 294 273 86 43 chr6 164208594 164208733 -25070821 - L2 LINE L2 -3 3269 3125 871 173 0 26 chr6 164208894 164209050 -25070504 + FRAM SINE Alu 3 154 -22 1835 203 50 31 chr6 164209250 164209708 -25069846 + MLT1C LTR MaLR 1 467 0 2583 67 0 0 chr6 164209835 164210135 -25069419 - AluSc SINE Alu -8 301 2 2044 148 45 28 chr6 164210538 164210896 -25068658 + THE1B LTR MaLR 1 364 0 522 295 78 9 chr6 164211826 164212043 -25067511 + MIR SINE MIR 16 247 -15 2089 118 0 60 chr6 164212169 164212500 -25067054 - AluSx SINE Alu -1 311 1 1972 154 3 7 chr6 164212505 164212811 -25066743 - AluJo SINE Alu -7 305 1 23 0 0 0 chr6 164213286 164213309 -25066245 + AT_rich Low_complexity Low_complexity 1 23 0 2729 46 0 0 chr6 164214113 164214419 -25065135 - AluYa5 SINE Alu -5 306 1 247 273 50 31 chr6 164214460 164214621 -25064933 - L1ME4a LINE L1 -3 6118 5955 1209 258 88 38 chr6 164214767 164215321 -25064233 - HAL1 LINE L1 -124 2383 1802 2360 116 42 14 chr6 164215325 164215678 -25063876 + THE1B LTR MaLR 2 364 0 2728 148 59 4 chr6 164215710 164216183 -25063371 - MLT1D LTR MaLR 0 505 7 625 223 46 0 chr6 164216191 164216321 -25063233 - HAL1 LINE L1 -801 1706 1571 374 232 201 76 chr6 164216323 164216576 -25062978 - MLT1J1 LTR MaLR -2 444 139 2422 89 0 3 chr6 164216576 164216879 -25062675 - AluSq SINE Alu -11 302 1 374 232 201 76 chr6 164216879 164216959 -25062595 - MLT1J1 LTR MaLR -307 139 70 425 228 162 12 chr6 164217000 164217167 -25062387 - HAL1 LINE L1 -932 1575 1384 1780 162 0 31 chr6 164217266 164217556 -25061998 - AluJo SINE Alu -31 281 1 691 216 0 8 chr6 164217562 164217696 -25061858 - AluJb SINE Alu -176 136 4 624 239 15 45 chr6 164217696 164217960 -25061594 - HAL1 LINE L1 -1230 1277 1022 260 279 154 10 chr6 164218258 164218362 -25061192 + L2 LINE L2 3195 3313 0 21 0 0 0 chr6 164218478 164218499 -25061055 + AT_rich Low_complexity Low_complexity 1 21 0 186 369 24 0 chr6 164218947 164219031 -25060523 + L3 LINE CR1 1068 1153 -424 26 30 0 0 chr6 164219453 164219486 -25060068 + AT_rich Low_complexity Low_complexity 1 33 0 1968 126 31 7 chr6 164219553 164219839 -25059715 - AluSx SINE Alu -19 293 1 244 287 59 86 chr6 164219949 164220171 -25059383 + MIR3 SINE MIR 3 212 -15 300 140 0 0 chr6 164221594 164221644 -25057910 - MADE1 DNA Mariner 0 80 31 471 214 138 7 chr6 164221696 164221841 -25057713 + MIR SINE MIR 63 226 -36 26 30 0 0 chr6 164222064 164222097 -25057457 + AT_rich Low_complexity Low_complexity 1 33 0 1833 92 8 0 chr6 164222924 164223162 -25056392 - AluSg/x SINE Alu -4 308 69 24 32 0 0 chr6 164223642 164223673 -25055881 + AT_rich Low_complexity Low_complexity 1 31 0 2317 81 3 0 chr6 164225156 164225441 -25054113 - AluSp SINE Alu -7 306 21 2133 136 0 0 chr6 164226936 164227238 -25052316 + AluSx SINE Alu 1 302 -10 367 203 27 0 chr6 164227972 164228046 -25051508 - MER5A DNA MER1_type -88 101 26 225 0 0 0 chr6 164228445 164228470 -25051084 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr6 164228826 164228847 -25050707 + AT_rich Low_complexity Low_complexity 1 21 0 894 143 34 7 chr6 164228936 164229083 -25050471 + MLT1A1 LTR MaLR 1 151 -214 329 157 0 0 chr6 164229088 164229139 -25050415 + MLT1A1 LTR MaLR 257 307 -58 1146 164 61 41 chr6 164229353 164229807 -25049747 - MER1B DNA MER1_type 0 339 1 2029 142 68 6 chr6 164229883 164230220 -25049334 - MLT1A1 LTR MaLR -7 358 1 601 256 113 34 chr6 164230220 164230486 -25049068 - MLT1J LTR MaLR -12 499 213 718 265 90 0 chr6 164231145 164231345 -25048209 - MIR SINE MIR 0 262 45 330 257 120 60 chr6 164232207 164232390 -25047164 + L2 LINE L2 3075 3268 -4 202 333 86 43 chr6 164232476 164232638 -25046916 + MER5A DNA MER1_type 6 174 -15 252 0 0 0 chr6 164234441 164234469 -25045085 + (TG)n Simple_repeat Simple_repeat 2 29 0 687 239 157 12 chr6 164234945 164235246 -25044308 - MER57A LTR ERV1 0 403 99 1514 192 7 4 chr6 164235543 164235819 -25043735 - AluJb SINE Alu -3 309 33 2013 141 24 37 chr6 164237121 164237497 -25042057 - L1MB7 LINE L1 -30 6154 5784 1950 110 59 7 chr6 164237506 164237796 -25041758 - AluY SINE Alu -6 305 1 1986 126 0 20 chr6 164237816 164238109 -25041445 - AluSx SINE Alu -12 300 14 2030 185 49 5 chr6 164238169 164238577 -25040977 - L1P1 LINE L1 -350 5805 5377 739 65 0 21 chr6 164238650 164238743 -25040811 + AluY SINE Alu 2 92 -219 239 279 67 39 chr6 164238743 164238847 -25040707 - MER91A DNA MER1_type -81 115 9 270 317 30 69 chr6 164238863 164239095 -25040459 + MIR SINE MIR 34 257 -5 375 176 148 37 chr6 164239149 164239257 -25040297 + MER58 DNA MER1_type 4 123 -218 281 263 82 122 chr6 164241385 164241655 -25037899 - MLT1L LTR MaLR -13 602 238 262 299 78 32 chr6 164241766 164241920 -25037634 - MLT1J LTR MaLR -350 161 1 225 180 0 0 chr6 164242167 164242217 -25037337 + GA-rich Low_complexity Low_complexity 2 51 0 300 341 14 29 chr6 164242524 164242662 -25036892 + MIR SINE MIR 75 210 -52 28 48 0 0 chr6 164243466 164243508 -25036046 + AT_rich Low_complexity Low_complexity 1 42 0 856 256 144 74 chr6 164244177 164244748 -25034806 + MLT1L LTR MaLR 5 615 0 208 303 13 13 chr6 164245100 164245176 -25034378 + L2 LINE L2 3009 3084 -188 667 222 7 21 chr6 164245310 164245454 -25034100 - L2 LINE L2 0 3313 3172 225 344 0 0 chr6 164245470 164245531 -25034023 + L2 LINE L2 3245 3305 -8 279 292 117 53 chr6 164245553 164245724 -25033830 - MLT1H LTR MaLR -245 304 123 1851 176 0 0 chr6 164247122 164247417 -25032137 + AluSx SINE Alu 1 295 -17 376 312 19 64 chr6 164247955 164248112 -25031442 - MIR3 SINE MIR -29 179 30 277 270 0 16 chr6 164249135 164249198 -25030356 - MIR3 SINE MIR -51 157 96 378 294 66 29 chr6 164249781 164249917 -25029637 - MER5B DNA MER1_type -35 143 3 282 242 112 17 chr6 164251104 164251237 -25028317 + MIR SINE MIR 34 172 -67 243 0 0 0 chr6 164251597 164251624 -25027930 + (T)n Simple_repeat Simple_repeat 1 27 0 1942 154 6 6 chr6 164251705 164252017 -25027537 - AluSx SINE Alu 0 312 1 23 78 0 0 chr6 164253778 164253829 -25025725 + AT_rich Low_complexity Low_complexity 1 51 0 5382 174 47 24 chr6 164253899 164255227 -25024327 + L1M4 LINE L1 4141 5494 -684 1427 127 13 44 chr6 164255227 164255455 -25024099 + AluJb SINE Alu 1 221 -91 1830 100 35 23 chr6 164256702 164257009 -25022545 + AluSc SINE Alu 16 325 0 27 62 0 0 chr6 164257522 164257570 -25021984 + AT_rich Low_complexity Low_complexity 1 48 0 369 315 122 39 chr6 164257841 164258095 -25021459 + L3b LINE CR1 1303 1577 -6 25 0 0 0 chr6 164258464 164258489 -25021065 + AT_rich Low_complexity Low_complexity 1 25 0 411 21 0 0 chr6 164258912 164258960 -25020594 + (CA)n Simple_repeat Simple_repeat 1 48 0 187 326 98 30 chr6 164259632 164259764 -25019790 - MIR SINE MIR -100 162 22 273 341 90 24 chr6 164259770 164259937 -25019617 - MER5B DNA MER1_type 0 178 1 260 252 50 79 chr6 164260018 164260157 -25019397 - MER103 DNA DNA -6 160 26 2416 80 3 0 chr6 164260642 164260942 -25018612 + AluSx SINE Alu 1 301 -11 2637 58 0 10 chr6 164260942 164261255 -25018299 + AluY SINE Alu 1 310 -1 1047 39 78 8 chr6 164261597 164261726 -25017828 + MER85 DNA T2_type 2 139 0 193 400 18 48 chr6 164261736 164261901 -25017653 + MER5B DNA MER1_type 2 161 -17 210 105 26 0 chr6 164261927 164261965 -25017589 - L3 LINE CR1 -182 1395 1357 346 296 69 16 chr6 164263278 164263412 -25016142 + MIR SINE MIR 21 154 -62 2301 84 0 0 chr6 164263421 164263751 -25015803 + AluSx SINE Alu 1 330 0 260 100 100 0 chr6 164263771 164263848 -25015706 + Alu SINE Alu 239 319 0 234 222 19 0 chr6 164263849 164263903 -25015651 + MIR SINE MIR 156 210 -52 196 323 194 32 chr6 164264114 164264238 -25015316 - L2 LINE L2 -5 3267 3124 351 332 126 54 chr6 164264304 164264533 -25015021 + L2 LINE L2 2342 2553 -719 1069 144 27 27 chr6 164264533 164264720 -25014834 - MER5A DNA MER1_type 0 189 3 351 332 126 54 chr6 164264720 164265361 -25014193 + L2 LINE L2 2553 3267 -5 191 322 81 40 chr6 164265369 164265543 -25014011 - L2 LINE L2 -219 3053 2873 317 221 13 39 chr6 164266964 164267041 -25012513 - L2 LINE L2 -1 3312 3238 2365 41 41 7 chr6 164267913 164268204 -25011350 + AluY SINE Alu 1 301 -10 1975 180 42 0 chr6 164268803 164269137 -25010417 + MER7A DNA MER2_type 1 346 0 252 266 26 104 chr6 164270447 164270618 -25008936 + MIR SINE MIR 18 180 -62 2428 110 38 9 chr6 164270653 164270998 -25008556 - THE1A LTR MaLR 0 355 1 2024 106 36 4 chr6 164271865 164272140 -25007414 - AluSx SINE Alu -22 290 7 2342 89 0 0 chr6 164274419 164274711 -25004843 + AluSq SINE Alu 1 292 -21 908 209 60 0 chr6 164274941 164275142 -25004412 + L1MB3 LINE L1 5964 6176 -7 203 368 0 0 chr6 164275570 164275646 -25003908 + L3b LINE CR1 1125 1200 -383 268 240 260 0 chr6 164276009 164276155 -25003399 + L3b LINE CR1 1319 1502 -81 280 315 198 29 chr6 164277380 164277653 -25001901 - L2 LINE L2 0 3272 2954 594 294 142 5 chr6 164278091 164278309 -25001245 + MIR SINE MIR 15 262 0 290 321 46 53 chr6 164278401 164278532 -25001022 - L2 LINE L2 -7 3265 3136 218 315 31 39 chr6 164279389 164279519 -25000035 - MIR3 SINE MIR -68 140 12 203 269 19 0 chr6 164280104 164280156 -24999398 - MIR SINE MIR -132 130 78 189 0 0 0 chr6 164280231 164280252 -24999302 + (TTTTTA)n Simple_repeat Simple_repeat 3 23 0 189 0 0 0 chr6 164280289 164280310 -24999244 + (T)n Simple_repeat Simple_repeat 1 21 0 2190 108 0 0 chr6 164280354 164280642 -24998912 + AluSx SINE Alu 1 288 -24 32 0 0 0 chr6 164280642 164280674 -24998880 + AT_rich Low_complexity Low_complexity 1 32 0 2174 114 0 3 chr6 164281151 164281450 -24998104 - AluSx SINE Alu -14 298 1 288 217 108 70 chr6 164283838 164283967 -24995587 + MIR SINE MIR 59 192 -70 1284 214 29 11 chr6 164285174 164285455 -24994099 - MLT1E2 LTR MaLR -340 286 1 389 297 89 78 chr6 164285689 164286369 -24993185 - L2 LINE L2 -1 3271 2596 805 179 75 46 chr6 164287183 164287356 -24992198 - MER5B DNA MER1_type 0 178 1 23 0 0 0 chr6 164288722 164288745 -24990809 + AT_rich Low_complexity Low_complexity 1 23 0 231 108 27 0 chr6 164289146 164289183 -24990371 + tRNA-Arg-AGG tRNA tRNA 1 38 -38 204 216 0 0 chr6 164289837 164289874 -24989680 - L2 LINE L2 -16 3256 3220 24 0 0 0 chr6 164290003 164290027 -24989527 + AT_rich Low_complexity Low_complexity 1 24 0 293 111 74 0 chr6 164290038 164290092 -24989462 + L1MD2 LINE L1 6302 6359 0 380 263 71 35 chr6 164290325 164290523 -24989031 + L1MC/D LINE L1 5119 5323 -823 225 301 65 11 chr6 164290547 164290640 -24988914 + L1MC/D LINE L1 5383 5480 -2328 692 200 97 56 chr6 164290646 164290841 -24988713 + MER63A DNA MER1_type 2 204 -6 629 221 79 8 chr6 164290940 164291136 -24988418 - L1M3 LINE L1 -648 5523 5311 367 311 54 29 chr6 164291190 164291633 -24987921 - L1M3 LINE L1 -906 5240 4787 2467 80 0 3 chr6 164291882 164292194 -24987360 + AluY SINE Alu 1 311 0 250 325 44 13 chr6 164292254 164292482 -24987072 - L1M3 LINE L1 -1549 4597 4363 1739 53 0 107 chr6 164292683 164292945 -24986609 + L1PA8 LINE L1 5619 5852 -320 223 319 79 47 chr6 164294044 164294361 -24985193 + L2 LINE L2 2494 2820 -494 2006 147 0 19 chr6 164294494 164294807 -24984747 - AluJb SINE Alu -5 307 1 813 243 49 18 chr6 164294962 164295188 -24984366 - MIR SINE MIR -28 234 2 400 224 32 72 chr6 164295329 164295454 -24984100 + L2 LINE L2 3192 3311 -2 1354 172 50 99 chr6 164295639 164295880 -24983674 - MLT1A1 LTR MaLR 0 365 148 2048 149 0 0 chr6 164295880 164296181 -24983373 - AluSx SINE Alu -11 301 1 1354 172 50 99 chr6 164296181 164296323 -24983231 - MLT1A1 LTR MaLR -217 148 1 186 288 17 17 chr6 164296991 164297050 -24982504 - MIR SINE MIR -110 152 94 387 333 37 7 chr6 164297935 164298070 -24981484 - L2 LINE L2 0 3272 3134 24 0 0 0 chr6 164298300 164298324 -24981230 + AT_rich Low_complexity Low_complexity 1 24 0 1433 176 97 0 chr6 164298324 164298591 -24980963 - AluJo SINE Alu -19 293 1 284 340 150 35 chr6 164298655 164299002 -24980552 - L2 LINE L2 -722 2592 2206 210 37 0 0 chr6 164299170 164299197 -24980357 + (CAA)n Simple_repeat Simple_repeat 2 28 0 191 274 163 52 chr6 164299308 164299443 -24980111 - L2 LINE L2 -1365 1949 1800 1412 256 102 7 chr6 164299637 164300048 -24979506 - LTR16B LTR ERVL -14 450 1 681 238 30 55 chr6 164300049 164300196 -24979358 - MIR SINE MIR -61 201 59 584 257 43 48 chr6 164300196 164300406 -24979148 - MER63A DNA MER1_type -1 209 1 681 238 30 55 chr6 164300406 164300460 -24979094 - MIR SINE MIR -203 59 5 233 316 123 26 chr6 164300599 164300713 -24978841 + L2 LINE L2 3139 3263 -9 232 355 33 8 chr6 164301464 164301585 -24977969 - L2 LINE L2 -1 3312 3189 364 264 187 81 chr6 164301646 164301994 -24977560 - L2 LINE L2 0 3272 2888 2112 152 0 0 chr6 164302074 164302384 -24977170 + AluSx SINE Alu 1 310 -2 23 68 0 0 chr6 164303960 164304004 -24975550 + AT_rich Low_complexity Low_complexity 1 44 0 667 233 52 16 chr6 164304683 164304876 -24974678 - L2 LINE L2 0 3313 3114 1144 231 83 57 chr6 164304974 164305143 -24974411 + Charlie4a DNA MER1_type 19 182 -1779 2064 35 0 0 chr6 164305143 164305375 -24974179 - L1PA5 LINE L1 0 6154 5923 1144 231 83 57 chr6 164305375 164305664 -24973890 + Charlie4a DNA MER1_type 182 489 -19 * 1417 221 25 66 chr6 164305655 164306005 -24973549 - Charlie1a DNA MER1_type -2370 391 59 1965 53 140 8 chr6 164306005 164306269 -24973285 + AluY SINE Alu 1 299 -2 1417 221 25 66 chr6 164306269 164306326 -24973228 - Charlie1a DNA MER1_type -2702 59 1 887 143 21 0 chr6 164306616 164306756 -24972798 - Charlie4 DNA MER1_type -1 1960 1818 2022 148 6 3 chr6 164307335 164307660 -24971894 + MSTA LTR MaLR 1 326 -102 803 133 7 93 chr6 164307763 164307878 -24971676 + MSTA LTR MaLR 289 390 -38 2158 137 3 10 chr6 164307878 164308192 -24971362 - AluSx SINE Alu 0 312 1 803 133 7 93 chr6 164308192 164308227 -24971327 + MSTA LTR MaLR 390 426 -2 2116 103 7 0 chr6 164308962 164309243 -24970311 - AluSx SINE Alu -29 283 1 343 347 16 8 chr6 164309254 164309378 -24970176 - MIR SINE MIR -63 145 21 841 249 51 39 chr6 164309520 164309777 -24969777 + Charlie8 DNA MER1_type 5 264 -2153 2062 133 3 0 chr6 164310153 164310439 -24969115 - AluSx SINE Alu -25 287 1 675 218 95 0 chr6 164310851 164311030 -24968524 - L1PA16 LINE L1 -13 6153 5958 255 103 0 0 chr6 164311371 164311410 -24968144 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 26 0 0 0 chr6 164311740 164311766 -24967788 + AT_rich Low_complexity Low_complexity 1 26 0 289 233 23 12 chr6 164314143 164314229 -24965325 + GA-rich Low_complexity Low_complexity 2 88 0 497 275 105 64 chr6 164314455 164314788 -24964766 + L1MEd LINE L1 848 1166 -1636 2270 106 3 3 chr6 164314788 164315089 -24964465 - AluY SINE Alu -10 301 1 497 275 105 64 chr6 164315089 164315424 -24964130 + L1MEd LINE L1 1166 1907 -895 23 0 0 0 chr6 164316076 164316099 -24963455 + AT_rich Low_complexity Low_complexity 1 23 0 2340 110 0 0 chr6 164316215 164316525 -24963029 - AluSx SINE Alu -2 310 1 21 36 0 0 chr6 164316555 164316583 -24962971 + AT_rich Low_complexity Low_complexity 1 28 0 309 250 60 0 chr6 164318764 164318848 -24960706 - L2 LINE L2 -10 3262 3174 214 378 22 7 chr6 164319038 164319173 -24960381 + MIR3 SINE MIR 9 145 -63 467 291 105 19 chr6 164320592 164320802 -24958752 + MIR SINE MIR 17 244 -18 267 31 0 0 chr6 164320811 164320843 -24958711 + (ATG)n Simple_repeat Simple_repeat 1 32 0 423 257 64 31 chr6 164321032 164321313 -24958241 - MER102a DNA MER1_type -10 320 5 418 264 164 29 chr6 164321929 164322069 -24957485 + MIR SINE MIR 47 205 -57 615 159 26 9 chr6 164323024 164323137 -24956417 - LTR48B LTR ERV1 0 644 530 920 134 67 13 chr6 164323137 164323286 -24956268 + FRAM SINE Alu 1 156 -20 2708 128 0 15 chr6 164323291 164323696 -24955858 - LTR48B LTR ERV1 -116 528 130 562 241 115 16 chr6 164324607 164324828 -24954726 + MIR SINE MIR 18 261 -1 6454 102 21 13 chr6 164324951 164325935 -24953619 - L1MA4A LINE L1 -7 6296 5304 1025 96 18 7 chr6 164326955 164327111 -24952443 - L1MA2 LINE L1 0 6300 6126 21 71 0 0 chr6 164328105 164328147 -24951407 + AT_rich Low_complexity Low_complexity 1 42 0 1035 156 29 58 chr6 164328860 164329065 -24950489 - AluJb SINE Alu -30 282 84 209 161 0 0 chr6 164329604 164329635 -24949919 + polypyrimidine Low_complexity Low_complexity 2 32 0 5072 94 13 15 chr6 164330091 164330769 -24948785 - L1PA10 LINE L1 -2 6166 5490 2502 78 0 13 chr6 164331088 164331259 -24948295 - AluSx SINE Alu -8 304 137 2271 60 40 43 chr6 164331259 164331560 -24947994 - AluY SINE Alu -11 300 1 2502 78 0 13 chr6 164331560 164331696 -24947858 - AluSx SINE Alu -175 137 1 1122 290 88 37 chr6 164332850 164333506 -24946048 + HAL1 LINE L1 754 1443 -1064 246 81 0 0 chr6 164333533 164333570 -24945984 + (CA)n Simple_repeat Simple_repeat 2 38 0 314 226 36 0 chr6 164333634 164333718 -24945836 + HAL1 LINE L1 1687 1773 -734 25 0 0 0 chr6 164333933 164333958 -24945596 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr6 164333971 164334001 -24945553 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr6 164334015 164334038 -24945516 + AT_rich Low_complexity Low_complexity 1 23 0 2395 91 3 0 chr6 164334585 164334892 -24944662 + AluSg SINE Alu 1 308 -2 2453 121 10 34 chr6 164335081 164335493 -24944061 + L1MA2 LINE L1 5803 6204 -100 580 98 0 146 chr6 164335493 164335541 -24944013 - LOR1-int LTR ERV1 -7025 1095 1074 1945 107 0 4 chr6 164335541 164335804 -24943750 + AluSx SINE Alu 41 302 -10 580 98 0 146 chr6 164335804 164335878 -24943676 - LOR1-int LTR ERV1 -7046 1074 991 24 0 0 0 chr6 164336772 164336796 -24942758 + AT_rich Low_complexity Low_complexity 1 24 0 468 309 29 30 chr6 164336927 164337108 -24942446 - MIR SINE MIR -62 146 7 1935 107 89 4 chr6 164337241 164337521 -24942033 + AluSq SINE Alu 2 305 -8 287 224 17 147 chr6 164337562 164337678 -24941876 - MIR SINE MIR -66 142 42 311 276 205 0 chr6 164340460 164340587 -24938967 - L2 LINE L2 0 3313 3161 2440 60 7 0 chr6 164341068 164341366 -24938188 + AluY SINE Alu 1 300 -11 432 256 111 63 chr6 164341449 164341766 -24937788 - L1MC4a LINE L1 -97 6024 5691 351 0 0 0 chr6 164341772 164341811 -24937743 + (CA)n Simple_repeat Simple_repeat 2 40 0 184 225 0 0 chr6 164342723 164342763 -24936791 - L2 LINE L2 -4 3309 3270 186 43 0 0 chr6 164344774 164344797 -24934757 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 206 261 109 43 chr6 164345083 164345221 -24934333 - L2 LINE L2 -160 3112 2966 21 0 0 0 chr6 164345267 164345288 -24934266 + AT_rich Low_complexity Low_complexity 1 21 0 2390 95 0 0 chr6 164346290 164346596 -24932958 + AluSq SINE Alu 1 306 -7 1091 68 15 184 chr6 164347177 164347357 -24932197 - L1MA2 LINE L1 -38 6266 6168 2226 92 0 0 chr6 164347357 164347639 -24931915 - AluSc SINE Alu -27 282 1 1091 68 15 184 chr6 164347639 164347794 -24931760 - L1MA2 LINE L1 -136 6168 5988 230 365 78 5 chr6 164347803 164347995 -24931559 - MARNA DNA Mariner -154 432 227 590 211 16 0 chr6 164347995 164348118 -24931436 + L1ME LINE L1 5043 5167 -979 4131 145 24 108 chr6 164348126 164348945 -24930609 + L1MB4 LINE L1 5069 5772 -408 2416 88 3 0 chr6 164348945 164349242 -24930312 + AluSp SINE Alu 1 298 -15 4131 145 24 108 chr6 164349242 164349596 -24929958 + L1MB4 LINE L1 5772 6154 -26 704 143 92 8 chr6 164349738 164349857 -24929697 + AluJ SINE Alu 3 131 -181 929 146 80 0 chr6 164351173 164351310 -24928244 + AluJ SINE Alu 137 284 -18 21 0 0 0 chr6 164353344 164353365 -24926189 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 164353601 164353625 -24925929 + AT_rich Low_complexity Low_complexity 1 24 0 231 245 20 102 chr6 164354332 164354430 -24925124 - LTR34 LTR ERV1 -32 667 578 2291 104 7 0 chr6 164354532 164354840 -24924714 + AluY SINE Alu 1 310 -1 2133 164 18 20 chr6 164355113 164355410 -24924144 - MLT1B LTR MaLR -1 389 92 2858 82 19 21 chr6 164355410 164355786 -24923768 + THE1C LTR MaLR 1 375 0 2133 164 18 20 chr6 164355786 164355878 -24923676 - MLT1B LTR MaLR -298 92 1 290 222 14 42 chr6 164355969 164356041 -24923513 - MIR3 SINE MIR -33 175 106 26 0 0 0 chr6 164356329 164356355 -24923199 + AT_rich Low_complexity Low_complexity 1 26 0 181 229 0 0 chr6 164358471 164358506 -24921048 - MER5A DNA MER1_type -154 35 1 186 372 58 15 chr6 164359692 164359829 -24919725 - MIR SINE MIR -71 191 49 311 344 102 8 chr6 164360071 164360199 -24919355 - MIR3 SINE MIR -67 141 2 284 268 107 67 chr6 164361370 164361594 -24917960 + L1ME LINE L1 5367 5599 -522 1340 168 46 80 chr6 164363096 164363447 -24916107 - MER44D DNA MER2_type 0 609 1 2183 83 0 0 chr6 164363503 164363768 -24915786 - AluSg SINE Alu -45 265 1 516 267 70 0 chr6 164363872 164364044 -24915510 - L1ME4a LINE L1 -69 6052 5869 223 315 56 0 chr6 164365165 164365254 -24914300 + L2 LINE L2 3165 3258 -55 231 246 0 16 chr6 164365267 164365328 -24914226 + (TGAA)n Simple_repeat Simple_repeat 2 61 0 2132 73 3 36 chr6 164365525 164365826 -24913728 + AluSx SINE Alu 13 303 -9 292 313 145 11 chr6 164366976 164367155 -24912399 + MIR SINE MIR 6 208 -54 753 172 0 30 chr6 164368191 164368325 -24911229 + FLAM_A SINE Alu 3 132 -1 2085 111 7 3 chr6 164368631 164368919 -24910635 + AluSx SINE Alu 15 303 -9 794 149 85 80 chr6 164369255 164369338 -24910216 + MER5A DNA MER1_type 1 82 -107 1955 104 72 4 chr6 164369338 164369616 -24909938 + AluSg SINE Alu 1 297 -13 794 149 85 80 chr6 164369616 164369720 -24909834 + MER5A DNA MER1_type 82 189 0 251 268 18 0 chr6 164369755 164369811 -24909743 + L2 LINE L2 3215 3271 -1 234 0 0 0 chr6 164371906 164371932 -24907622 + (TG)n Simple_repeat Simple_repeat 2 27 0 26 0 0 0 chr6 164371936 164371962 -24907592 + AT_rich Low_complexity Low_complexity 1 26 0 190 322 141 8 chr6 164373095 164373216 -24906338 + L2 LINE L2 3124 3260 -12 350 326 109 43 chr6 164373333 164373517 -24906037 + L1PB4 LINE L1 585 780 -6069 8405 211 20 33 chr6 164373925 164376585 -24902969 + L1PB4 LINE L1 1067 3663 -3185 1524 82 14 5 chr6 164376585 164376793 -24902761 + L1MA2 LINE L1 6095 6304 0 8405 211 20 33 chr6 164376793 164377918 -24901636 + L1PB4 LINE L1 3663 4802 -2046 221 56 0 28 chr6 164377921 164377957 -24901597 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3798 23 0 0 chr6 164377957 164378386 -24901168 - L1PA2 LINE L1 -22 6133 5705 * 6384 162 6 37 chr6 164378385 164378817 -24900737 + L1PB4 LINE L1 4789 5233 -1625 2328 118 47 19 chr6 164378817 164379182 -24900372 - THE1C LTR MaLR 0 375 1 6384 162 6 37 chr6 164379182 164380054 -24899500 + L1PB4 LINE L1 5233 6131 -727 2224 115 0 0 chr6 164380054 164380342 -24899212 + AluSg SINE Alu 1 288 -22 6384 162 6 37 chr6 164380342 164380676 -24898878 + L1PB4 LINE L1 6131 6383 -475 2073 132 10 13 chr6 164380676 164380980 -24898574 + AluSx SINE Alu 1 303 -9 6384 162 6 37 chr6 164380980 164381090 -24898464 + L1PB4 LINE L1 6383 6495 -363 239 164 16 0 chr6 164381112 164381173 -24898381 + (TA)n Simple_repeat Simple_repeat 2 63 0 267 184 0 0 chr6 164381173 164381222 -24898332 - L1P5 LINE L1 -323 5833 5785 2222 135 6 41 chr6 164381222 164381586 -24897968 + L1PB4 LINE L1 6499 6849 -9 29 28 0 0 chr6 164381586 164381622 -24897932 + AT_rich Low_complexity Low_complexity 1 36 0 515 127 13 0 chr6 164381875 164381954 -24897600 - MADE1 DNA Mariner 0 80 1 409 306 64 13 chr6 164381957 164382114 -24897440 - MIR SINE MIR -74 188 24 413 75 118 0 chr6 164382316 164382477 -24897077 + (TA)n Simple_repeat Simple_repeat 1 180 0 419 0 20 0 chr6 164382841 164382892 -24896662 + (TG)n Simple_repeat Simple_repeat 1 52 0 405 293 20 52 chr6 164383019 164383202 -24896352 - MIR SINE MIR -50 212 30 882 161 15 0 chr6 164383334 164383464 -24896090 + FLAM_C SINE Alu 1 132 -1 2208 121 3 0 chr6 164383901 164384198 -24895356 + AluSg SINE Alu 1 298 -12 240 363 26 9 chr6 164384840 164384953 -24894601 - L2 LINE L2 -241 3031 2917 532 299 14 29 chr6 164386782 164386989 -24892565 - HAL1 LINE L1 -3 2504 2301 493 278 39 10 chr6 164387046 164387251 -24892303 - HAL1 LINE L1 -303 2204 1994 487 268 45 30 chr6 164387594 164387792 -24891762 - HAL1 LINE L1 -710 1797 1597 558 0 0 0 chr6 164387809 164387871 -24891683 + (TC)n Simple_repeat Simple_repeat 1 62 0 1103 263 125 52 chr6 164387874 164388447 -24891107 - HAL1 LINE L1 -1068 1439 796 1769 165 3 38 chr6 164388447 164388762 -24890792 + AluJb SINE Alu 1 304 -8 1103 263 125 52 chr6 164388762 164388942 -24890612 - HAL1 LINE L1 -1711 796 631 247 290 9 75 chr6 164389433 164389540 -24890014 - HAL1 LINE L1 -2406 101 2 626 210 0 4 chr6 164390604 164390795 -24888759 + MER5C DNA MER1_type 5 269 -55 1645 199 111 10 chr6 164391207 164391614 -24887940 + MLT1C LTR MaLR 20 467 0 370 336 91 11 chr6 164391765 164392128 -24887426 + L1ME4a LINE L1 5710 6101 -20 2076 104 3 7 chr6 164392192 164392479 -24887075 - AluSp SINE Alu -4 309 24 266 335 146 0 chr6 164392489 164392647 -24886907 - MIR SINE MIR -74 188 8 2068 106 11 0 chr6 164393352 164393634 -24885920 + AluSq SINE Alu 1 285 -28 22 35 0 0 chr6 164393634 164393663 -24885891 + AT_rich Low_complexity Low_complexity 1 29 0 230 333 0 0 chr6 164394092 164394170 -24885384 - MIR SINE MIR -2 260 183 217 278 0 0 chr6 164394976 164395030 -24884524 + L2 LINE L2 3256 3309 -4 * 453 284 8 0 chr6 164395012 164395146 -24884408 - MIR SINE MIR -10 252 118 364 77 0 0 chr6 164396980 164397032 -24882522 - MADE1 DNA Mariner 0 80 29 599 284 60 0 chr6 164398072 164398255 -24881299 + MIR SINE MIR 4 197 -65 1990 113 35 3 chr6 164399843 164400126 -24879428 + AluSx SINE Alu 6 297 -15 322 252 67 100 chr6 164400301 164400571 -24878983 + L1ME4a LINE L1 5353 5613 -508 382 271 33 16 chr6 164400581 164400703 -24878851 + L1ME2 LINE L1 6034 6157 -7 324 270 243 32 chr6 164400714 164401084 -24878470 + L1ME4a LINE L1 5601 6048 -73 285 29 0 0 chr6 164401511 164401545 -24878009 + (CA)n Simple_repeat Simple_repeat 2 35 0 645 264 20 59 chr6 164402143 164402397 -24877157 - MIR SINE MIR -1 261 18 207 0 0 0 chr6 164402409 164402432 -24877122 + (TC)n Simple_repeat Simple_repeat 2 24 0 710 149 9 0 chr6 164404638 164404745 -24874809 - AluJb SINE Alu -11 301 194 1964 119 65 0 chr6 164406102 164406395 -24873159 - AluSx SINE Alu 0 312 1 233 316 69 14 chr6 164407525 164407743 -24871811 + L1ME LINE L1 5648 5877 -244 306 233 11 33 chr6 164407910 164408000 -24871554 + (TATATG)n Simple_repeat Simple_repeat 1 88 0 180 0 0 0 chr6 164408334 164408354 -24871200 + (TG)n Simple_repeat Simple_repeat 1 20 0 1594 195 0 29 chr6 164410167 164410307 -24869247 + AluJb SINE Alu 1 144 -168 2304 101 0 3 chr6 164410307 164410605 -24868949 + AluSg SINE Alu 3 299 -11 1594 195 0 29 chr6 164410605 164410777 -24868777 + AluJb SINE Alu 144 304 -8 259 361 46 29 chr6 164462303 164462541 -24817013 + L2 LINE L2 2811 3052 -220 310 343 29 7 chr6 164462668 164462808 -24816746 + MIR SINE MIR 15 157 -105 2176 118 3 16 chr6 164463518 164463833 -24815721 - AluSx SINE Alu -1 311 1 976 128 123 13 chr6 164463919 164464146 -24815408 - L1MA8 LINE L1 -21 6270 6019 882 152 0 0 chr6 164464330 164464462 -24815092 - FRAM SINE Alu -8 168 37 233 268 101 116 chr6 164464463 164464930 -24814624 + L2 LINE L2 2046 2505 -809 337 285 98 55 chr6 164465067 164465302 -24814252 + MLT1L LTR MaLR 321 565 -50 189 311 126 30 chr6 164465560 164465695 -24813859 + L2 LINE L2 2844 2991 -281 582 160 67 8 chr6 164465872 164465991 -24813563 + MER3 DNA MER1_type 77 202 -7 226 189 19 0 chr6 164466389 164466442 -24813112 - L1MC4 LINE L1 -2 8040 7987 22 35 0 0 chr6 164466456 164466485 -24813069 + AT_rich Low_complexity Low_complexity 1 29 0 1384 193 110 30 chr6 164466559 164466959 -24812595 - L1MC4 LINE L1 -124 7918 7487 44 56 0 0 chr6 164468189 164468261 -24811293 + GC_rich Low_complexity Low_complexity 1 72 0 231 61 0 0 chr6 164468576 164468609 -24810945 + (CCG)n Simple_repeat Simple_repeat 2 34 0 237 285 34 0 chr6 164468745 164468835 -24810719 + G-rich Low_complexity Low_complexity 1 156 0 397 257 158 55 chr6 164468943 164469215 -24810339 - L1M2 LINE L1 -5859 990 691 2020 95 7 0 chr6 164471237 164471510 -24808044 - AluSx SINE Alu 0 312 38 245 139 0 0 chr6 164473225 164473261 -24806293 - L2 LINE L2 -12 3301 3266 614 256 74 33 chr6 164473262 164473477 -24806077 - L2 LINE L2 -1 3312 3089 258 231 22 102 chr6 164473674 164473803 -24805751 + MIR SINE MIR 31 151 -65 254 279 0 0 chr6 164473913 164473981 -24805573 + MIR SINE MIR 192 259 -3 28 29 0 0 chr6 164475559 164475594 -24803960 + AT_rich Low_complexity Low_complexity 1 35 0 978 193 0 12 chr6 164476014 164476185 -24803369 - AluJo SINE Alu -59 253 85 377 283 46 53 chr6 164476300 164476452 -24803102 + MIR SINE MIR 19 169 -93 1643 194 3 10 chr6 164476924 164477212 -24802342 - AluJb SINE Alu -26 286 1 312 82 0 0 chr6 164477412 164477461 -24802093 + Alu SINE Alu 253 301 -1 1926 106 4 4 chr6 164477711 164477976 -24801578 - AluSq SINE Alu -5 308 44 646 180 16 23 chr6 164478508 164478636 -24800918 - FLAM_A SINE Alu -6 127 1 2021 123 3 0 chr6 164479470 164479762 -24799792 - AluY SINE Alu -18 293 1 202 239 163 54 chr6 164479789 164479881 -24799673 - L2 LINE L2 -2 3270 3169 251 299 75 60 chr6 164480034 164480168 -24799386 - L2 LINE L2 -220 3052 2917 542 305 89 32 chr6 164480749 164480995 -24798559 - L2 LINE L2 -353 2961 2702 465 296 71 43 chr6 164481030 164481068 -24798486 - L1MB3 LINE L1 -50 6133 6096 3044 181 80 21 chr6 164481068 164482038 -24797516 - L1MD2 LINE L1 -76 6090 5063 3085 207 115 16 chr6 164482041 164482978 -24796576 - L1MD2 LINE L1 -1242 4904 3875 1402 271 60 17 chr6 164482996 164483465 -24796089 - L2 LINE L2 -602 2712 2224 231 173 77 19 chr6 164484248 164484300 -24795254 + L2 LINE L2 3217 3271 -1 399 56 0 0 chr6 164484879 164484933 -24794621 + (TG)n Simple_repeat Simple_repeat 2 55 0 327 291 0 12 chr6 164485137 164485223 -24794331 + MIR SINE MIR 155 239 -23 25 51 0 0 chr6 164485249 164485288 -24794266 + AT_rich Low_complexity Low_complexity 1 39 0 1426 194 18 7 chr6 164485588 164485866 -24793688 + AluJo SINE Alu 21 301 -11 190 265 241 18 chr6 164485969 164486139 -24793415 - L2 LINE L2 -781 2533 2326 308 156 44 0 chr6 164486462 164486552 -24793002 + (TA)n Simple_repeat Simple_repeat 1 94 0 1612 185 0 24 chr6 164486552 164486844 -24792710 - AluJo SINE Alu -27 285 1 249 226 0 0 chr6 164487234 164487287 -24792267 + MIR SINE MIR 37 89 -119 285 170 19 0 chr6 164487304 164487357 -24792197 + L2 LINE L2 3256 3309 -4 1343 201 68 29 chr6 164488045 164488459 -24791095 + Charlie4a DNA MER1_type 14 443 -65 561 220 23 30 chr6 164488447 164488579 -24790975 + Charlie4 DNA MER1_type 1808 1938 -23 * 1203 219 56 22 chr6 164489195 164489519 -24790035 - MER46C DNA MER2_type 0 338 4 212 125 0 0 chr6 164490121 164490153 -24789401 - L2 LINE L2 -32 3240 3209 2159 107 3 19 chr6 164490256 164490564 -24788990 + AluSc SINE Alu 3 305 -4 1870 97 67 15 chr6 164490756 164491059 -24788495 - AluSx SINE Alu 0 317 1 339 256 35 12 chr6 164491198 164491284 -24788270 + MIR3 SINE MIR 113 200 -8 22 35 0 0 chr6 164492390 164492419 -24787135 + AT_rich Low_complexity Low_complexity 1 29 0 273 281 105 9 chr6 164492631 164492745 -24786809 - MIR SINE MIR -10 252 128 21 0 0 0 chr6 164493210 164493231 -24786323 + AT_rich Low_complexity Low_complexity 1 21 0 1342 128 0 15 chr6 164494453 164494657 -24784897 + AluSg/x SINE Alu 97 297 -15 245 254 30 0 chr6 164495945 164496012 -24783542 - MIR SINE MIR -20 242 174 * 287 229 0 60 chr6 164496003 164496086 -24783468 + MIR SINE MIR 162 239 -23 251 247 25 12 chr6 164497105 164497186 -24782368 - L1MC/D LINE L1 -1999 5809 5728 204 214 0 0 chr6 164497271 164497327 -24782227 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 217 211 0 0 chr6 164497418 164497456 -24782098 + (CACG)n Simple_repeat Simple_repeat 4 41 0 2521 82 0 0 chr6 164497619 164497924 -24781630 - AluSq SINE Alu -8 305 1 29 90 0 0 chr6 164498883 164498961 -24780593 + AT_rich Low_complexity Low_complexity 1 78 0 1696 175 20 7 chr6 164499281 164499578 -24779976 + AluJo SINE Alu 1 301 -11 234 91 0 0 chr6 164499585 164499618 -24779936 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 2251 85 0 20 chr6 164499852 164500157 -24779397 + AluSq SINE Alu 1 299 -14 2162 117 0 3 chr6 164500309 164500608 -24778946 + AluSg SINE Alu 1 298 -12 247 224 184 0 chr6 164500999 164501075 -24778479 - L2 LINE L2 -11 3302 3213 207 88 0 0 chr6 164501086 164501120 -24778434 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 2239 96 0 0 chr6 164501120 164501402 -24778152 - AluSx SINE Alu -30 282 1 1121 125 54 0 chr6 164501788 164501956 -24777598 - FRAM SINE Alu -6 170 1 751 241 89 34 chr6 164502709 164502945 -24776609 - MIR SINE MIR -13 249 1 250 364 27 18 chr6 164503956 164504066 -24775488 - MER5A DNA MER1_type -64 125 15 195 243 0 165 chr6 164504235 164504338 -24775216 - MER5B DNA MER1_type -3 175 90 257 67 0 44 chr6 164504399 164504444 -24775110 + (CTG)n Simple_repeat Simple_repeat 2 44 0 212 238 0 0 chr6 164504625 164504667 -24774887 + MER5B DNA MER1_type 136 177 -1 300 317 84 0 chr6 164504811 164504978 -24774576 + L1ME LINE L1 5647 5827 -294 229 299 0 0 chr6 164505037 164505104 -24774450 + (TA)n Simple_repeat Simple_repeat 1 67 0 24 91 0 0 chr6 164505654 164505720 -24773834 + AT_rich Low_complexity Low_complexity 1 66 0 614 285 121 43 chr6 164505879 164506202 -24773352 - L1MC4a LINE L1 -1907 5901 5554 22 0 0 0 chr6 164506267 164506289 -24773265 + AT_rich Low_complexity Low_complexity 1 22 0 2165 114 0 3 chr6 164506557 164506855 -24772699 + AluSq SINE Alu 4 300 -13 308 232 192 8 chr6 164506996 164507121 -24772433 - MER103 DNA DNA -5 161 14 1815 194 49 0 chr6 164507555 164507901 -24771653 - MLT1A1 LTR MaLR -2 363 1 24 53 0 0 chr6 164508240 164508278 -24771276 + AT_rich Low_complexity Low_complexity 1 38 0 2242 112 0 0 chr6 164508306 164508601 -24770953 + AluSg SINE Alu 1 295 -15 333 0 0 0 chr6 164508601 164508638 -24770916 + (CA)n Simple_repeat Simple_repeat 2 38 0 381 213 32 97 chr6 164508800 164508869 -24770685 - L1ME LINE L1 -373 5748 5676 2345 99 0 3 chr6 164508869 164509171 -24770383 - AluSx SINE Alu -11 301 1 381 213 32 97 chr6 164509171 164509256 -24770298 - L1ME LINE L1 -445 5676 5604 333 294 52 19 chr6 164509262 164509299 -24770255 - L1MEc LINE L1 -4801 1509 1475 1437 159 113 12 chr6 164509299 164509626 -24769928 - MER46B DNA MER2_type -1 235 1 333 294 52 19 chr6 164509626 164509799 -24769755 - L1MEc LINE L1 -4835 1475 1292 297 0 0 0 chr6 164509811 164509844 -24769710 + (TG)n Simple_repeat Simple_repeat 2 34 0 1258 286 71 69 chr6 164509875 164511062 -24768492 - L1MEc LINE L1 -4928 1191 3 2187 170 64 7 chr6 164511387 164511792 -24767762 - MSTA LTR MaLR 0 428 1 8270 165 62 7 chr6 164511792 164513357 -24766197 - MSTA-int LTR MaLR 0 1651 1 2230 167 54 2 chr6 164513357 164513764 -24765790 - MSTA LTR MaLR 0 428 1 212 188 104 0 chr6 164514211 164514259 -24765295 - MIR3 SINE MIR -16 192 140 305 277 28 73 chr6 164514263 164514440 -24765114 + HAL1 LINE L1 2099 2267 -240 438 151 55 0 chr6 164514441 164514514 -24765040 - MSTA LTR MaLR -299 129 53 288 300 31 23 chr6 164514523 164514653 -24764901 + HAL1 LINE L1 2356 2486 -21 24 91 0 0 chr6 164514800 164514866 -24764688 + AT_rich Low_complexity Low_complexity 1 66 0 1112 334 55 46 chr6 164514876 164515544 -24764010 + L2 LINE L2 2186 2859 -455 195 267 162 38 chr6 164515735 164515840 -24763714 + L2 LINE L2 3155 3272 0 2197 228 129 48 chr6 164516543 164517919 -24761635 - L1ME LINE L1 -4619 1461 6 2638 277 123 38 chr6 164518210 164519685 -24759869 - L2 LINE L2 0 3313 1712 315 0 0 0 chr6 164519816 164519851 -24759703 + (TG)n Simple_repeat Simple_repeat 2 36 0 507 176 92 34 chr6 164520404 164520523 -24759031 + MER5B DNA MER1_type 3 128 -50 288 308 165 0 chr6 164521392 164521525 -24758029 + MIR SINE MIR 64 218 -44 379 268 76 45 chr6 164521607 164521764 -24757790 + MIR3 SINE MIR 19 180 -28 24 0 0 0 chr6 164521783 164521807 -24757747 + AT_rich Low_complexity Low_complexity 1 24 0 2092 153 0 0 chr6 164521954 164522261 -24757293 + AluSx SINE Alu 1 307 -5 420 330 113 26 chr6 164522673 164522903 -24756651 + MIR SINE MIR 5 254 -8 251 287 182 16 chr6 164523355 164523662 -24755892 + L1MC4a LINE L1 5812 6169 -1639 1470 195 78 114 chr6 164524969 164525393 -24754161 + L1MC5 LINE L1 6713 7090 -871 1516 154 33 43 chr6 164525393 164525692 -24753862 - AluJo SINE Alu -16 296 1 1470 195 78 114 chr6 164525692 164526159 -24753395 + L1MC5 LINE L1 7090 7572 -389 1490 102 10 0 chr6 164526197 164526394 -24753160 + AluSg/x SINE Alu 107 305 -5 1492 277 54 41 chr6 164526397 164527315 -24752239 + L1MEc LINE L1 685 1617 -4779 1804 169 7 3 chr6 164527315 164527610 -24751944 + AluJb SINE Alu 1 296 -16 1492 277 54 41 chr6 164527610 164527662 -24751892 + L1MEc LINE L1 1617 1667 -4729 14097 156 34 4 chr6 164527718 164529196 -24750358 - L1PB1 LINE L1 0 6867 5435 1916 192 71 12 chr6 164529196 164529676 -24749878 + LTR22 LTR ERVK 2 509 0 14097 156 34 4 chr6 164529676 164529916 -24749638 - L1PB1 LINE L1 -1432 5435 5204 318 98 0 0 chr6 164529916 164529967 -24749587 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 14097 156 34 4 chr6 164529967 164534236 -24745318 - L1PB1 LINE L1 -1663 5204 688 47 44 0 0 chr6 164534267 164534335 -24745219 + AT_rich Low_complexity Low_complexity 1 68 0 1217 213 38 48 chr6 164534380 164534854 -24744700 + L1MEc LINE L1 607 1075 -5321 255 176 54 0 chr6 164534854 164534928 -24744626 + L1MEc LINE L1 1028 1105 -5291 * 700 185 23 40 chr6 164534926 164535099 -24744455 + L1ME1 LINE L1 5993 6162 -4 818 233 54 26 chr6 164535104 164535387 -24744167 + L1ME2 LINE L1 5856 6155 -9 1088 231 32 66 chr6 164535814 164536165 -24743389 + LTR16A LTR ERVL 1 357 -100 1883 154 23 0 chr6 164536165 164536470 -24743084 - AluJb SINE Alu 0 312 1 1088 231 32 66 chr6 164536470 164536568 -24742986 + LTR16A LTR ERVL 357 457 0 2185 106 0 37 chr6 164536690 164536976 -24742578 + AluSg SINE Alu 1 275 -35 194 0 39 0 chr6 164536976 164537002 -24742552 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2185 106 0 37 chr6 164537002 164537037 -24742517 + AluSg SINE Alu 275 310 0 330 349 35 35 chr6 164537042 164537240 -24742314 + L1M4 LINE L1 4407 4604 -1542 2008 119 22 16 chr6 164537801 164538112 -24741442 + AluSq SINE Alu 1 313 0 206 274 0 0 chr6 164539327 164539378 -24740176 - MIR SINE MIR -67 195 145 505 263 13 0 chr6 164540771 164540923 -24738631 + L1MEc LINE L1 1639 1792 -4604 523 224 0 6 chr6 164540931 164541092 -24738462 + L1M4 LINE L1 4400 4559 -1587 1383 231 32 32 chr6 164541105 164541478 -24738076 + L1MEc LINE L1 44 416 -5980 406 203 158 93 chr6 164541771 164542017 -24737537 + MIR SINE MIR 1 262 0 1945 151 0 7 chr6 164542049 164542354 -24737200 + AluSq SINE Alu 1 303 -10 1514 173 31 104 chr6 164542861 164543282 -24736272 + MLT1B LTR MaLR 1 390 0 2479 188 63 4 chr6 164543717 164544243 -24735311 + MER89 LTR ERV1 1 557 -2 736 104 0 0 chr6 164544404 164544510 -24735044 - L1PA8 LINE L1 -5 6167 6062 682 175 84 75 chr6 164546094 164546439 -24733115 + MER31B LTR ERV1 1 465 -1 300 290 144 40 chr6 164546906 164547095 -24732459 + MIR SINE MIR 12 219 -43 1208 207 81 73 chr6 164547492 164547925 -24731629 - L1MC5 LINE L1 -49 7912 7471 2584 111 80 5 chr6 164547925 164548323 -24731231 - MSTA LTR MaLR 0 428 1 1208 207 81 73 chr6 164548323 164548494 -24731060 - L1MC5 LINE L1 -490 7471 7303 1312 183 83 3 chr6 164548707 164549019 -24730535 - L1MEc LINE L1 -5598 798 462 1851 212 18 67 chr6 164550470 164550779 -24728775 - MLT1C LTR MaLR 0 467 189 2191 118 0 7 chr6 164550779 164551076 -24728478 - AluSx SINE Alu -17 295 1 1851 212 18 67 chr6 164551076 164551257 -24728297 - MLT1C LTR MaLR -278 189 1 848 270 132 31 chr6 164551313 164551778 -24727776 + LTR33A LTR ERVL 38 520 -3 2209 40 44 4 chr6 164552226 164552498 -24727056 - AluY SINE Alu -28 283 1 2278 128 62 50 chr6 164552800 164553222 -24726332 - MSTA LTR MaLR 0 428 2 442 319 119 22 chr6 164553466 164553692 -24725862 + MIR SINE MIR 1 248 -14 228 228 177 13 chr6 164555194 164555273 -24724281 - MLT1J2 LTR MaLR -44 406 315 294 164 112 60 chr6 164555323 164555457 -24724097 - MLT1J2 LTR MaLR -238 212 72 181 302 121 26 chr6 164556334 164556450 -24723104 + L2 LINE L2 1337 1463 -1851 218 341 85 23 chr6 164556469 164556645 -24722909 + L2 LINE L2 1805 1991 -1323 378 365 96 15 chr6 164556965 164557359 -24722195 + L2 LINE L2 2479 2904 -410 1115 290 159 18 chr6 164557502 164558326 -24721228 + L2 LINE L2 2319 3275 -38 24 0 0 0 chr6 164558535 164558559 -24720995 + AT_rich Low_complexity Low_complexity 1 24 0 1907 148 3 0 chr6 164558559 164558849 -24720705 - AluJb SINE Alu -21 291 1 398 265 63 85 chr6 164559093 164559316 -24720238 + MIR SINE MIR 11 228 -34 1119 145 123 104 chr6 164559784 164560053 -24719501 + AluJb SINE Alu 29 302 -10 585 246 36 73 chr6 164560582 164560802 -24718752 + MIR SINE MIR 26 237 -25 743 167 22 0 chr6 164560884 164561022 -24718532 + MER58B DNA MER1_type 198 338 -3 1005 249 66 68 chr6 164561085 164561479 -24718075 + MLT1J LTR MaLR 2 394 -117 229 227 160 0 chr6 164561997 164562072 -24717482 - MIR SINE MIR -67 141 74 333 0 0 0 chr6 164562703 164562740 -24716814 + (TG)n Simple_repeat Simple_repeat 2 38 0 318 254 77 39 chr6 164562795 164562925 -24716629 - MIR SINE MIR -108 154 20 5046 192 55 50 chr6 164563240 164564027 -24715527 - Charlie1a DNA MER1_type -1307 1454 657 1835 171 3 0 chr6 164564027 164564313 -24715241 - AluJo SINE Alu -25 287 1 5046 192 55 50 chr6 164564313 164564950 -24714604 - Charlie1a DNA MER1_type -2104 657 24 2508 176 86 25 chr6 164565307 164565732 -24713822 + MLT2B1 LTR ERVL 1 461 -59 2132 139 0 0 chr6 164565732 164566034 -24713520 + AluSx SINE Alu 1 302 -10 2508 176 86 25 chr6 164566034 164566098 -24713456 + MLT2B1 LTR ERVL 461 520 0 207 178 22 0 chr6 164566778 164566823 -24712731 + MIR3 SINE MIR 160 205 -3 279 221 21 42 chr6 164571206 164571301 -24708253 + L1MC5 LINE L1 7832 7924 -37 29 0 0 0 chr6 164571553 164571582 -24707972 + AT_rich Low_complexity Low_complexity 1 29 0 225 271 0 0 chr6 164572248 164572313 -24707241 + (TG)n Simple_repeat Simple_repeat 1 65 0 309 26 0 0 chr6 164572790 164572828 -24706726 + (TG)n Simple_repeat Simple_repeat 2 39 0 2143 113 3 0 chr6 164575632 164575923 -24703631 - AluSx SINE Alu -20 292 1 231 286 173 8 chr6 164576068 164576201 -24703353 - MIR SINE MIR -1 261 107 229 333 128 8 chr6 164576883 164577000 -24702554 + L2 LINE L2 3136 3266 -6 542 107 0 0 chr6 164577146 164577221 -24702333 + MADE1 DNA Mariner 6 80 0 298 292 10 10 chr6 164577305 164577401 -24702153 - L3 LINE CR1 -683 894 799 1167 304 72 52 chr6 164578001 164578895 -24700659 + L3 LINE CR1 439 1350 -227 197 243 78 87 chr6 164579416 164579460 -24700094 + L3 LINE CR1 1360 1403 -174 1073 168 0 0 chr6 164579460 164579639 -24699915 + L1PB4 LINE L1 5975 6153 -3 197 243 78 87 chr6 164579639 164579697 -24699857 + L3 LINE CR1 1403 1461 -116 190 295 11 74 chr6 164579758 164579853 -24699701 - MER5B DNA MER1_type -1 177 89 21 0 0 0 chr6 164579994 164580015 -24699539 + AT_rich Low_complexity Low_complexity 1 21 0 362 311 17 0 chr6 164583139 164583258 -24696296 - L2 LINE L2 -6 3307 3187 1432 175 31 96 chr6 164584242 164584659 -24694895 + MLT1B LTR MaLR 1 390 0 269 330 48 19 chr6 164587644 164587747 -24691807 - L2 LINE L2 -23 3249 3144 518 103 0 13 chr6 164587964 164588042 -24691512 + AluS SINE Alu 2 78 -235 1734 119 4 0 chr6 164588049 164588292 -24691262 + AluSx SINE Alu 52 295 -17 627 232 97 5 chr6 164588330 164588515 -24691039 - MIR SINE MIR -54 208 7 2192 87 18 3 chr6 164589327 164589613 -24689941 - AluSc SINE Alu -19 290 1 845 179 19 0 chr6 164590072 164590228 -24689326 - FRAM SINE Alu -20 156 1 358 342 17 0 chr6 164590687 164590807 -24688747 - MIR SINE MIR -25 237 116 1559 106 5 0 chr6 164591267 164591484 -24688070 + L1PA8 LINE L1 5953 6170 -2 2163 118 7 0 chr6 164591506 164591914 -24687640 + AluSx SINE Alu 1 410 0 546 67 0 0 chr6 164592513 164592588 -24686966 + (CA)n Simple_repeat Simple_repeat 1 75 0 276 107 15 61 chr6 164592805 164592936 -24686618 - HERV17 LTR ERV1 -7793 833 709 484 171 26 0 chr6 164592936 164593088 -24686466 + (TCTCTG)n Simple_repeat Simple_repeat 4 159 0 362 304 76 18 chr6 164593314 164593538 -24686016 - L2 LINE L2 -188 3084 2848 181 256 167 0 chr6 164593525 164593603 -24685951 + L2 LINE L2 3170 3260 -12 * 2121 133 0 3 chr6 164593702 164594002 -24685552 - AluSx SINE Alu -13 299 1 204 67 0 0 chr6 164594164 164594194 -24685360 + (TTTCC)n Simple_repeat Simple_repeat 4 33 0 2272 81 27 3 chr6 164595521 164595816 -24683738 + AluSp SINE Alu 1 302 -11 698 207 50 22 chr6 164595933 164596112 -24683442 - MER96B DNA MER1_type? -233 184 1 508 216 110 29 chr6 164596114 164596258 -24683296 + MLT1H LTR MaLR 44 171 -279 380 248 27 74 chr6 164596517 164596666 -24682888 + MLT1L LTR MaLR 142 283 -332 2146 89 43 33 chr6 164596735 164597039 -24682515 + AluSx SINE Alu 1 307 -5 2056 125 0 4 chr6 164597039 164597497 -24682057 + AluSc SINE Alu 1 458 0 399 113 0 0 chr6 164597503 164597565 -24681989 + (GGAAA)n Simple_repeat Simple_repeat 4 65 0 285 215 25 25 chr6 164597706 164597828 -24681726 + MLT1L LTR MaLR 463 611 -4 224 264 0 0 chr6 164598176 164598229 -24681325 - L2 LINE L2 -4 3268 3216 1007 150 0 0 chr6 164598301 164598454 -24681100 + MLT1A2-int LTR MaLR 1583 1735 0 1571 186 55 13 chr6 164598455 164598766 -24680788 + MLT1A2 LTR MaLR 2 325 -49 315 261 93 19 chr6 164598837 164598998 -24680556 + L1ME4a LINE L1 5947 6119 -2 25 75 0 0 chr6 164599737 164599790 -24679764 + AT_rich Low_complexity Low_complexity 1 53 0 471 281 55 0 chr6 164601060 164601188 -24678366 + MER5A DNA MER1_type 55 189 0 934 227 19 10 chr6 164601603 164601810 -24677744 + MER63A DNA MER1_type 2 210 0 342 0 0 0 chr6 164601813 164601851 -24677703 + (CA)n Simple_repeat Simple_repeat 2 39 0 1878 209 73 37 chr6 164602131 164602594 -24676960 + MLT1D LTR MaLR 23 502 -3 402 21 0 0 chr6 164602731 164602778 -24676776 + (CA)n Simple_repeat Simple_repeat 2 48 0 238 250 83 46 chr6 164603131 164603239 -24676315 - MIR3 SINE MIR -38 170 59 625 282 88 20 chr6 164603932 164604237 -24675317 + L1ME3 LINE L1 5814 6139 -23 2346 88 3 0 chr6 164605648 164605944 -24673610 + AluSq SINE Alu 2 298 -15 1880 176 16 3 chr6 164606195 164606501 -24673053 - AluJo SINE Alu -2 310 1 447 186 10 10 chr6 164607880 164607977 -24671577 - L1MA4A LINE L1 -25 6278 6182 589 219 51 6 chr6 164610211 164610421 -24669133 - LTR50 LTR ERVL 0 795 540 255 205 24 95 chr6 164610539 164610624 -24668930 - LTR50 LTR ERVL -247 548 390 569 207 139 53 chr6 164610652 164610860 -24668694 - LTR50 LTR ERVL -567 228 3 397 264 39 23 chr6 164610872 164611001 -24668553 + L2 LINE L2 3158 3288 -25 2409 132 3 0 chr6 164611004 164611344 -24668210 - MER7A DNA MER2_type 0 346 8 752 234 106 29 chr6 164611456 164611837 -24667717 - MLT1J LTR MaLR 0 511 28 3838 204 36 30 chr6 164612815 164613789 -24665765 - L1ME1 LINE L1 0 6166 5188 1499 107 4 4 chr6 164613817 164614051 -24665503 + L1MA8 LINE L1 6054 6287 -4 914 123 0 0 chr6 164614489 164614611 -24664943 + FRAM SINE Alu 32 153 -23 23 33 0 0 chr6 164614611 164614641 -24664913 + AT_rich Low_complexity Low_complexity 1 30 0 256 250 0 0 chr6 164614764 164614812 -24664742 - MLT1J1 LTR MaLR -113 333 286 * 607 310 81 37 chr6 164614782 164615105 -24664449 - MLT1J LTR MaLR -130 381 45 231 245 0 20 chr6 164615620 164615669 -24663885 + MER81 DNA DNA 1 48 -66 2543 178 34 0 chr6 164615678 164616151 -24663403 - MLT1D LTR MaLR -8 497 9 241 154 0 0 chr6 164616221 164616260 -24663294 + MER20 DNA MER1_type 43 81 -138 907 156 9 118 chr6 164616296 164616507 -24663047 + MER1B DNA MER1_type 152 339 0 579 141 20 0 chr6 164616507 164616600 -24662954 + MER20 DNA MER1_type 101 195 -24 466 134 103 21 chr6 164618514 164618611 -24660943 - FRAM SINE Alu -4 172 68 662 35 0 12 chr6 164618623 164618709 -24660845 + (GAAA)n Simple_repeat Simple_repeat 4 88 0 4221 149 63 13 chr6 164618713 164619583 -24659971 + L1MC3 LINE L1 6865 7778 -7 21 36 0 0 chr6 164619928 164619956 -24659598 + AT_rich Low_complexity Low_complexity 1 28 0 1464 235 91 26 chr6 164619966 164620235 -24659319 + L1MC4a LINE L1 5368 5618 -2190 2299 120 5 32 chr6 164620235 164620609 -24658945 + THE1B LTR MaLR 1 364 0 1464 235 91 26 chr6 164620609 164620845 -24658709 + L1MC4a LINE L1 5618 5906 -1902 239 355 134 17 chr6 164621894 164622066 -24657488 - L2 LINE L2 -190 3082 2891 307 241 0 24 chr6 164622110 164622193 -24657361 + GA-rich Low_complexity Low_complexity 2 82 0 832 133 47 0 chr6 164622194 164622322 -24657232 + AluJb SINE Alu 1 134 -178 820 325 81 18 chr6 164622353 164622849 -24656705 + L2 LINE L2 1698 2224 -1090 820 151 22 99 chr6 164622849 164623081 -24656473 + MER20 DNA MER1_type 1 214 -5 389 300 31 54 chr6 164623155 164623378 -24656176 + L2 LINE L2 2283 2500 -814 482 285 65 38 chr6 164623497 164623683 -24655871 + MIR SINE MIR 12 202 -60 2260 206 29 62 chr6 164623983 164624060 -24655494 + L1MEc LINE L1 1583 1661 -4735 1939 159 31 0 chr6 164624060 164624350 -24655204 + AluJb SINE Alu 6 304 -8 2260 206 29 62 chr6 164624350 164624840 -24654714 + L1MEc LINE L1 1661 2121 -4275 762 185 23 0 chr6 164624840 164624970 -24654584 + FLAM_A SINE Alu 1 133 0 2260 206 29 62 chr6 164624970 164625155 -24654399 + L1MEc LINE L1 2121 2311 -4085 540 221 7 13 chr6 164625186 164625340 -24654214 + L1MEc LINE L1 2245 2397 -3818 1041 149 13 0 chr6 164625418 164625572 -24653982 + AluSg/x SINE Alu 139 294 -18 1548 197 9 62 chr6 164625575 164626027 -24653527 + L1MEc LINE L1 2464 2891 -3324 460 333 16 40 chr6 164626692 164626824 -24652730 + HAL1 LINE L1 2229 2354 -153 2225 128 0 0 chr6 164626824 164627136 -24652418 + AluSq SINE Alu 1 312 -1 460 333 16 40 chr6 164627136 164627255 -24652299 + HAL1 LINE L1 2354 2474 -33 265 333 124 76 chr6 164627641 164627932 -24651622 + L2 LINE L2 2956 3260 -12 441 0 0 0 chr6 164628042 164628091 -24651463 + (CA)n Simple_repeat Simple_repeat 2 50 0 258 239 209 40 chr6 164628444 164628645 -24650909 + MIR SINE MIR 25 259 -3 999 170 39 0 chr6 164629167 164629349 -24650205 - MER5A DNA MER1_type 0 189 1 32 67 0 0 chr6 164629421 164629481 -24650073 + AT_rich Low_complexity Low_complexity 1 60 0 779 255 152 37 chr6 164629893 164630230 -24649324 + L1ME4a LINE L1 5549 5967 -154 2110 134 0 3 chr6 164630230 164630537 -24649017 + AluSx SINE Alu 1 306 -6 779 255 152 37 chr6 164630537 164630713 -24648841 + L1ME4a LINE L1 5967 6121 0 263 338 103 0 chr6 164631454 164631590 -24647964 - MIR SINE MIR -1 261 112 431 204 117 73 chr6 164632186 164632244 -24647310 + L2 LINE L2 2633 2687 -627 2152 135 0 10 chr6 164632244 164632555 -24646999 - AluSx SINE Alu -4 308 1 431 204 117 73 chr6 164632555 164632633 -24646921 + L2 LINE L2 2687 2775 -539 847 208 0 12 chr6 164632635 164632803 -24646751 + FRAM SINE Alu 1 159 -17 190 77 51 26 chr6 164632804 164632843 -24646711 + L2 LINE L2 2775 2814 -500 240 284 27 0 chr6 164632872 164632946 -24646608 - MER5B DNA MER1_type -100 78 3 221 197 76 0 chr6 164632959 164633025 -24646529 + L2 LINE L2 2832 2902 -411 2351 119 60 96 chr6 164633052 164633663 -24645891 - MER4B LTR ERV1 0 779 22 728 259 78 72 chr6 164633663 164633958 -24645596 + L2 LINE L2 2964 3263 -50 1905 158 0 6 chr6 164633958 164634269 -24645285 + AluJo SINE Alu 1 309 -3 728 259 78 72 chr6 164634269 164634321 -24645233 + L2 LINE L2 3263 3313 0 1501 142 0 0 chr6 164634748 164634966 -24644588 + 7SLRNA srpRNA srpRNA 1 218 -102 2230 119 0 3 chr6 164634974 164635285 -24644269 + AluSx SINE Alu 1 310 -2 196 345 71 26 chr6 164635319 164635432 -24644122 - L2 LINE L2 -39 3233 3116 2247 122 22 71 chr6 164637508 164637918 -24641636 - MLT1B LTR MaLR 0 390 1 289 279 137 46 chr6 164638153 164638336 -24641218 + MIR SINE MIR 28 218 -44 270 239 33 0 chr6 164638396 164638488 -24641066 - L1M4 LINE L1 -1945 4201 4107 270 253 63 0 chr6 164638537 164638616 -24640938 - L1M4 LINE L1 -2541 3605 3522 716 260 75 28 chr6 164638637 164638741 -24640813 - L1MEd LINE L1 -4817 1312 1214 186 43 0 0 chr6 164638741 164638764 -24640790 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 716 260 75 28 chr6 164638764 164639059 -24640495 - L1MEd LINE L1 -4915 1214 950 2165 124 7 0 chr6 164639167 164639465 -24640089 - AluSg SINE Alu -10 300 1 227 324 0 0 chr6 164639509 164639580 -24639974 - L1MEd LINE L1 -5450 669 599 347 342 58 51 chr6 164639655 164639968 -24639586 - L1MEd LINE L1 -5759 360 46 323 293 57 38 chr6 164640113 164640270 -24639284 - MIR SINE MIR -71 191 32 324 246 35 0 chr6 164640327 164640441 -24639113 - L1MC4 LINE L1 0 8042 7925 212 200 18 0 chr6 164640450 164640505 -24639049 + CT-rich Low_complexity Low_complexity 2 57 0 342 284 28 7 chr6 164640536 164640677 -24638877 - L1MC4 LINE L1 -154 7888 7745 234 191 0 0 chr6 164640696 164640743 -24638811 - L1MC4 LINE L1 -368 7674 7628 1746 180 3 26 chr6 164640924 164641229 -24638325 - AluJo SINE Alu -14 298 1 1269 188 87 11 chr6 164641742 164642019 -24637535 + AluJo SINE Alu 1 298 -4 294 268 52 21 chr6 164642019 164642116 -24637438 + MIR SINE MIR 63 162 -100 2051 132 0 0 chr6 164642686 164642974 -24636580 + AluSx SINE Alu 1 288 -24 1343 149 85 53 chr6 164643128 164643410 -24636144 + AluJo SINE Alu 3 293 -19 496 291 142 0 chr6 164643752 164643900 -24635654 + MIR3 SINE MIR 37 205 -3 337 267 112 58 chr6 164645560 164645766 -24633788 + L1ME4a LINE L1 5889 6105 -16 448 272 155 58 chr6 164645857 164646200 -24633354 + LTR16B LTR ERVL 33 420 -44 3300 126 0 81 chr6 164646200 164646770 -24632784 + MER1A DNA MER1_type 4 527 0 448 272 155 58 chr6 164646770 164646820 -24632734 + LTR16B LTR ERVL 420 464 0 355 280 159 29 chr6 164646854 164647061 -24632493 + L1ME4a LINE L1 5888 6121 0 195 244 23 93 chr6 164647149 164647235 -24632319 - L2 LINE L2 0 3272 3193 710 207 28 137 chr6 164648165 164648552 -24631002 + MER2 DNA MER2_type 1 345 0 2039 116 0 58 chr6 164649520 164649655 -24629899 + AluSx SINE Alu 1 142 -170 2392 55 3 58 chr6 164649655 164649984 -24629570 + AluY SINE Alu 1 311 0 2039 116 0 58 chr6 164649984 164650159 -24629395 + AluSx SINE Alu 142 293 -19 950 261 92 50 chr6 164651189 164651828 -24627726 - L1ME4a LINE L1 -31 6090 5425 2135 106 3 3 chr6 164651888 164652222 -24627332 - AluSg SINE Alu 0 334 1 293 333 34 8 chr6 164652324 164652441 -24627113 + L2 LINE L2 3192 3311 -2 207 250 14 56 chr6 164652670 164652742 -24626812 - MIR SINE MIR -26 236 168 2372 58 14 3 chr6 164652800 164653093 -24626461 - AluY SINE Alu -15 296 1 294 50 0 0 chr6 164653259 164653299 -24626255 + (TG)n Simple_repeat Simple_repeat 1 40 0 234 186 35 58 chr6 164653301 164653387 -24626167 - L1MC4a LINE L1 -1868 5940 5857 400 264 55 65 chr6 164653411 164653450 -24626104 - L1ME4a LINE L1 -1543 4603 4565 1639 171 7 16 chr6 164653450 164653754 -24625800 + AluJb SINE Alu 5 305 -7 400 264 55 65 chr6 164653754 164653915 -24625639 - L1ME4a LINE L1 -1581 4565 4405 29 0 0 0 chr6 164653950 164653979 -24625575 + AT_rich Low_complexity Low_complexity 1 29 0 259 361 46 29 chr6 164654529 164654767 -24624787 + L2 LINE L2 2811 3052 -220 310 343 29 7 chr6 164654894 164655034 -24624520 + MIR SINE MIR 15 157 -105 2229 118 3 10 chr6 164655745 164656059 -24623495 - AluSx SINE Alu 0 312 1 1000 123 123 13 chr6 164656145 164656372 -24623182 - L1MA8 LINE L1 -21 6270 6019 882 152 0 0 chr6 164656556 164656688 -24622866 - FRAM SINE Alu -8 168 37 274 257 105 120 chr6 164656689 164657156 -24622398 + L2 LINE L2 2046 2505 -809 337 285 98 55 chr6 164657293 164657528 -24622026 + MLT1L LTR MaLR 321 565 -50 189 311 126 30 chr6 164657786 164657921 -24621633 + L2 LINE L2 2844 2991 -281 542 159 71 0 chr6 164658098 164658211 -24621343 + MER3 DNA MER1_type 77 197 -12 22 35 0 0 chr6 164658682 164658711 -24620843 + AT_rich Low_complexity Low_complexity 1 29 0 1266 193 110 30 chr6 164658785 164659185 -24620369 - L1MC4 LINE L1 -124 7918 7487 37 69 0 0 chr6 164660416 164660488 -24619066 + GC_rich Low_complexity Low_complexity 1 72 0 204 67 0 0 chr6 164660803 164660833 -24618721 + (CCG)n Simple_repeat Simple_repeat 2 31 0 410 297 97 81 chr6 164660955 164661451 -24618103 - L1M2 LINE L1 -5776 1073 433 2034 95 7 0 chr6 164663457 164663730 -24615824 - AluSx SINE Alu 0 312 38 245 139 0 0 chr6 164665445 164665481 -24614073 - L2 LINE L2 -12 3301 3266 614 256 74 33 chr6 164665482 164665697 -24613857 - L2 LINE L2 -1 3312 3089 258 231 22 102 chr6 164665894 164666023 -24613531 + MIR SINE MIR 31 151 -65 254 279 0 0 chr6 164666133 164666201 -24613353 + MIR SINE MIR 192 259 -3 28 29 0 0 chr6 164667780 164667815 -24611739 + AT_rich Low_complexity Low_complexity 1 35 0 978 193 0 12 chr6 164668235 164668406 -24611148 - AluJo SINE Alu -59 253 85 392 276 46 53 chr6 164668521 164668673 -24610881 + MIR SINE MIR 19 169 -93 1647 194 3 10 chr6 164669145 164669433 -24610121 - AluJb SINE Alu -26 286 1 309 83 0 0 chr6 164669633 164669681 -24609873 + Alu SINE Alu 253 300 -2 1942 102 4 4 chr6 164669931 164670195 -24609359 - AluSq SINE Alu -6 307 44 646 180 16 23 chr6 164670727 164670855 -24608699 - FLAM_A SINE Alu -6 127 1 2007 127 3 0 chr6 164671689 164671981 -24607573 - AluY SINE Alu -18 293 1 202 239 163 54 chr6 164672008 164672100 -24607454 - L2 LINE L2 -2 3270 3169 242 306 75 60 chr6 164672253 164672387 -24607167 - L2 LINE L2 -220 3052 2917 542 305 89 32 chr6 164672967 164673213 -24606341 - L2 LINE L2 -353 2961 2702 475 278 82 57 chr6 164673248 164673286 -24606268 - L1MB3 LINE L1 -50 6133 6096 3068 178 80 22 chr6 164673286 164674257 -24605297 - L1MD2 LINE L1 -76 6090 5063 3071 208 115 16 chr6 164674260 164675197 -24604357 - L1MD2 LINE L1 -1242 4904 3875 1402 271 60 17 chr6 164675215 164675684 -24603870 - L2 LINE L2 -602 2712 2224 231 173 77 19 chr6 164676467 164676519 -24603035 + L2 LINE L2 3217 3271 -1 417 54 0 0 chr6 164677098 164677154 -24602400 + (TG)n Simple_repeat Simple_repeat 2 57 0 327 291 0 12 chr6 164677358 164677444 -24602110 + MIR SINE MIR 155 239 -23 25 51 0 0 chr6 164677470 164677509 -24602045 + AT_rich Low_complexity Low_complexity 1 39 0 1404 198 18 7 chr6 164677809 164678087 -24601467 + AluJo SINE Alu 21 301 -11 189 265 241 18 chr6 164678190 164678360 -24601194 - L2 LINE L2 -781 2533 2326 308 156 44 0 chr6 164678683 164678773 -24600781 + (TA)n Simple_repeat Simple_repeat 1 94 0 1612 185 0 24 chr6 164678773 164679065 -24600489 - AluJo SINE Alu -27 285 1 269 208 0 0 chr6 164679455 164679508 -24600046 + MIR SINE MIR 37 89 -119 285 170 19 0 chr6 164679525 164679578 -24599976 + L2 LINE L2 3256 3309 -4 1400 202 60 26 chr6 164680266 164680682 -24598872 + Charlie4a DNA MER1_type 14 443 -65 565 227 25 0 chr6 164680687 164680806 -24598748 + Charlie4 DNA MER1_type 1817 1938 -23 1203 219 56 22 chr6 164681422 164681746 -24597808 - MER46C DNA MER2_type 0 338 4 212 125 0 0 chr6 164682348 164682380 -24597174 - L2 LINE L2 -32 3240 3209 2122 114 3 19 chr6 164682483 164682790 -24596764 + AluSc SINE Alu 3 304 -5 2058 98 61 14 chr6 164682986 164683282 -24596272 - AluSx SINE Alu -2 310 1 339 256 35 12 chr6 164683421 164683507 -24596047 + MIR3 SINE MIR 113 200 -8 22 35 0 0 chr6 164684613 164684642 -24594912 + AT_rich Low_complexity Low_complexity 1 29 0 273 281 105 9 chr6 164684854 164684968 -24594586 - MIR SINE MIR -10 252 128 22 0 0 0 chr6 164685433 164685455 -24594099 + AT_rich Low_complexity Low_complexity 1 22 0 1342 128 0 15 chr6 164686677 164686881 -24592673 + AluSg/x SINE Alu 97 297 -15 235 269 30 0 chr6 164688169 164688236 -24591318 - MIR SINE MIR -20 242 174 * 287 229 0 60 chr6 164688227 164688310 -24591244 + MIR SINE MIR 162 239 -23 251 247 25 12 chr6 164689327 164689408 -24590146 - L1MC/D LINE L1 -1999 5809 5728 195 129 0 0 chr6 164689518 164689549 -24590005 + (TGGA)n Simple_repeat Simple_repeat 2 32 0 217 211 0 0 chr6 164689640 164689678 -24589876 + (CACG)n Simple_repeat Simple_repeat 4 41 0 2504 82 0 0 chr6 164689841 164690144 -24589410 - AluSq SINE Alu -10 303 1 29 90 0 0 chr6 164691103 164691181 -24588373 + AT_rich Low_complexity Low_complexity 1 78 0 1761 168 20 7 chr6 164691501 164691798 -24587756 + AluJo SINE Alu 1 301 -11 210 71 0 0 chr6 164691805 164691833 -24587721 + (GAAA)n Simple_repeat Simple_repeat 4 31 0 2321 79 0 16 chr6 164692073 164692378 -24587176 + AluSq SINE Alu 1 300 -13 2130 120 0 3 chr6 164692530 164692829 -24586725 + AluSg SINE Alu 1 298 -12 247 224 184 0 chr6 164693220 164693296 -24586258 - L2 LINE L2 -11 3302 3213 207 88 0 0 chr6 164693307 164693341 -24586213 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 2251 92 0 0 chr6 164693341 164693623 -24585931 - AluSx SINE Alu -30 282 1 1114 126 54 0 chr6 164694009 164694176 -24585378 - FRAM SINE Alu -7 169 1 765 237 89 34 chr6 164694928 164695164 -24584390 - MIR SINE MIR -13 249 1 250 364 27 18 chr6 164696175 164696285 -24583269 - MER5A DNA MER1_type -64 125 15 195 243 0 165 chr6 164696454 164696557 -24582997 - MER5B DNA MER1_type -3 175 90 257 67 0 44 chr6 164696618 164696663 -24582891 + (CTG)n Simple_repeat Simple_repeat 2 44 0 212 238 0 0 chr6 164696844 164696886 -24582668 + MER5B DNA MER1_type 136 177 -1 300 317 84 0 chr6 164697030 164697197 -24582357 + L1ME LINE L1 5647 5827 -294 229 299 0 0 chr6 164697256 164697323 -24582231 + (TA)n Simple_repeat Simple_repeat 2 68 0 24 91 0 0 chr6 164697873 164697939 -24581615 + AT_rich Low_complexity Low_complexity 1 66 0 640 282 121 43 chr6 164698098 164698421 -24581133 - L1MC4a LINE L1 -1907 5901 5554 22 0 0 0 chr6 164698486 164698508 -24581046 + AT_rich Low_complexity Low_complexity 1 22 0 2149 115 0 3 chr6 164698776 164699072 -24580482 + AluSq SINE Alu 4 298 -15 308 232 192 8 chr6 164699213 164699338 -24580216 - MER103 DNA DNA -5 161 14 1815 194 49 0 chr6 164699772 164700118 -24579436 - MLT1A1 LTR MaLR -2 363 1 24 53 0 0 chr6 164700457 164700495 -24579059 + AT_rich Low_complexity Low_complexity 1 38 0 2337 103 0 0 chr6 164700523 164700825 -24578729 + AluSg SINE Alu 1 302 -8 261 0 0 0 chr6 164700825 164700854 -24578700 + (CA)n Simple_repeat Simple_repeat 2 30 0 381 213 32 97 chr6 164701016 164701085 -24578469 - L1ME LINE L1 -373 5748 5676 2330 103 0 3 chr6 164701085 164701387 -24578167 - AluSx SINE Alu -11 301 1 381 213 32 97 chr6 164701387 164701472 -24578082 - L1ME LINE L1 -445 5676 5604 333 294 52 19 chr6 164701478 164701515 -24578039 - L1MEc LINE L1 -4801 1509 1475 1453 156 113 12 chr6 164701515 164701842 -24577712 - MER46B DNA MER2_type -1 235 1 333 294 52 19 chr6 164701842 164702015 -24577539 - L1MEc LINE L1 -4835 1475 1292 495 0 0 0 chr6 164702027 164702082 -24577472 + (TG)n Simple_repeat Simple_repeat 2 56 0 1243 287 71 69 chr6 164702113 164703300 -24576254 - L1MEc LINE L1 -4928 1191 3 2189 170 64 7 chr6 164703625 164704030 -24575524 - MSTA LTR MaLR 0 428 1 8270 165 62 7 chr6 164704030 164705595 -24573959 - MSTA-int LTR MaLR 0 1651 1 2230 167 54 2 chr6 164705595 164706002 -24573552 - MSTA LTR MaLR 0 428 1 212 188 104 0 chr6 164706448 164706496 -24573058 - MIR3 SINE MIR -16 192 140 305 277 28 73 chr6 164706500 164706677 -24572877 + HAL1 LINE L1 2099 2267 -240 438 151 55 0 chr6 164706678 164706751 -24572803 - MSTA LTR MaLR -299 129 53 288 300 31 23 chr6 164706760 164706890 -24572664 + HAL1 LINE L1 2356 2486 -21 24 91 0 0 chr6 164707037 164707103 -24572451 + AT_rich Low_complexity Low_complexity 1 66 0 1112 334 55 46 chr6 164707113 164707781 -24571773 + L2 LINE L2 2186 2859 -455 191 267 162 38 chr6 164707972 164708077 -24571477 + L2 LINE L2 3155 3272 0 2450 228 129 48 chr6 164708780 164710156 -24569398 - L1ME LINE L1 -4619 1461 6 2627 277 123 38 chr6 164710448 164711923 -24567631 - L2 LINE L2 0 3313 1712 261 0 0 0 chr6 164712054 164712083 -24567471 + (TG)n Simple_repeat Simple_repeat 2 30 0 506 176 92 34 chr6 164712636 164712755 -24566799 + MER5B DNA MER1_type 3 128 -50 288 308 165 0 chr6 164713623 164713756 -24565798 + MIR SINE MIR 64 218 -44 367 274 76 45 chr6 164713838 164713995 -24565559 + MIR3 SINE MIR 19 180 -28 24 0 0 0 chr6 164714014 164714038 -24565516 + AT_rich Low_complexity Low_complexity 1 24 0 2043 154 0 0 chr6 164714185 164714490 -24565064 + AluSx SINE Alu 1 305 -7 1379 121 0 5 chr6 164764945 164765144 -24514410 - AluSg SINE Alu -112 198 1 570 195 57 134 chr6 164765172 164765470 -24514084 + L1MC4 LINE L1 7768 8042 0 396 276 49 65 chr6 164765489 164765735 -24513819 - HAL1b LINE L1 -891 457 216 1164 189 0 18 chr6 164765791 164766013 -24513541 + AluJo SINE Alu 87 304 -8 498 154 13 0 chr6 164766861 164766939 -24512615 + AluJ/FRAM SINE Alu 214 292 -20 1880 147 14 0 chr6 164767050 164767342 -24512212 + AluSx SINE Alu 1 296 -16 2346 100 0 0 chr6 164768247 164768546 -24511008 + AluY SINE Alu 1 299 -12 4678 134 30 73 chr6 164769083 164770016 -24509538 + Tigger1 DNA MER2_type 24 916 -1502 1137 107 6 13 chr6 164770016 164770175 -24509379 + AluSg SINE Alu 1 158 -152 189 0 0 0 chr6 164770521 164770542 -24509012 + (CA)n Simple_repeat Simple_repeat 1 21 0 2388 90 3 0 chr6 164770671 164770971 -24508583 + AluSx SINE Alu 1 301 -11 7105 102 10 130 chr6 164770980 164771252 -24508302 + Tigger1 DNA MER2_type 907 1210 -1208 2582 40 3 0 chr6 164771252 164771549 -24508005 + AluY SINE Alu 1 298 -13 7105 102 10 130 chr6 164771549 164771804 -24507750 + Tigger1 DNA MER2_type 1210 1494 -924 1893 136 13 33 chr6 164771804 164772105 -24507449 + AluSx SINE Alu 1 295 -17 7105 102 10 130 chr6 164772105 164772207 -24507347 + Tigger1 DNA MER2_type 1494 1607 -811 528 126 243 19 chr6 164772207 164772310 -24507244 + FLAM_A SINE Alu 11 136 -6 7105 102 10 130 chr6 164772310 164772669 -24506885 + Tigger1 DNA MER2_type 1607 2007 -411 2145 121 7 0 chr6 164772669 164772974 -24506580 - AluSx SINE Alu -5 307 1 7105 102 10 130 chr6 164772974 164773212 -24506342 + Tigger1 DNA MER2_type 2007 2040 -378 1534 186 21 14 chr6 164773212 164773502 -24506052 - AluJb SINE Alu -15 297 6 7105 102 10 130 chr6 164773502 164773674 -24505880 + Tigger1 DNA MER2_type 2040 2231 -187 2137 105 3 0 chr6 164773675 164773991 -24505563 + AluSx SINE Alu 1 317 0 2078 116 0 3 chr6 164774162 164774454 -24505100 + AluSg SINE Alu 1 291 -19 346 223 95 20 chr6 164774463 164774611 -24504943 + L1ME4a LINE L1 5959 6117 -4 366 23 0 0 chr6 164775142 164775185 -24504369 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2081 106 7 14 chr6 164775557 164775870 -24503684 + AluSx SINE Alu 1 311 0 311 360 144 0 chr6 164776192 164776317 -24503237 - L2 LINE L2 -6 3266 3124 281 100 0 0 chr6 164776856 164776896 -24502658 + L1MC5 LINE L1 7193 7232 -729 576 228 122 57 chr6 164776947 164777390 -24502164 + L1MC5 LINE L1 7226 7675 -286 200 333 0 0 chr6 164777399 164777483 -24502071 + T-rich Low_complexity Low_complexity 1 84 0 326 233 193 25 chr6 164777532 164777734 -24501820 + L1MC5 LINE L1 7690 7925 -36 524 179 140 28 chr6 164778022 164778201 -24501353 + MLT1K LTR MaLR 390 588 0 399 319 40 93 chr6 164778223 164778674 -24500880 - L2 LINE L2 -6 3266 2840 195 306 149 38 chr6 164778750 164779011 -24500543 + L2 LINE L2 2629 2918 -396 281 264 103 41 chr6 164779685 164780122 -24499432 + L1ME3 LINE L1 1055 1471 -4744 349 237 94 20 chr6 164780133 164780443 -24499111 + L1ME3 LINE L1 5498 5895 -336 2223 94 24 0 chr6 164781726 164782014 -24497540 + AluSp SINE Alu 1 295 -18 1999 123 7 14 chr6 164782135 164782427 -24497127 - AluJb SINE Alu -22 290 1 218 250 21 0 chr6 164783623 164783671 -24495883 - MIR3 SINE MIR -52 156 108 202 287 32 11 chr6 164783814 164783908 -24495646 + MIR3 SINE MIR 112 207 -1 28 29 0 0 chr6 164784499 164784534 -24495020 + AT_rich Low_complexity Low_complexity 1 35 0 325 268 120 57 chr6 164784961 164785170 -24494384 + L3 LINE CR1 853 1074 -503 322 216 153 18 chr6 164785318 164785429 -24494125 + MIR SINE MIR 63 188 -74 814 131 16 0 chr6 164785467 164785589 -24493965 - FLAM_C SINE Alu -9 124 1 184 340 85 9 chr6 164785614 164785720 -24493834 + L3 LINE CR1 1173 1286 -291 338 232 244 60 chr6 164785796 164785991 -24493563 + L1MC4a LINE L1 5993 6151 -1657 2361 82 7 3 chr6 164785991 164786294 -24493260 + AluSq SINE Alu 1 304 -9 338 232 244 60 chr6 164786294 164786413 -24493141 + L1MC4a LINE L1 6151 6365 -1443 304 243 115 10 chr6 164786447 164786597 -24492957 - MIR SINE MIR -63 145 23 1715 126 16 74 chr6 164786774 164786928 -24492626 - AluJb SINE Alu -21 291 162 207 0 0 0 chr6 164786928 164786951 -24492603 + (TG)n Simple_repeat Simple_repeat 2 24 0 1715 126 16 74 chr6 164786951 164787105 -24492449 - AluJb SINE Alu -150 162 1 23 0 0 0 chr6 164787187 164787210 -24492344 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr6 164788097 164788121 -24491433 + AT_rich Low_complexity Low_complexity 1 24 0 1420 129 0 9 chr6 164788271 164788481 -24491073 - AluSg/x SINE Alu -10 302 95 367 302 168 40 chr6 164788803 164789101 -24490453 + L1ME4a LINE L1 5706 6041 -80 2002 124 0 0 chr6 164789687 164789962 -24489592 - AluSx SINE Alu -37 275 1 318 274 10 0 chr6 164789963 164790065 -24489489 - MER112 DNA MER1_type -2 258 156 23 0 0 0 chr6 164790071 164790094 -24489460 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr6 164790106 164790131 -24489423 + (TG)n Simple_repeat Simple_repeat 1 25 0 2363 82 0 10 chr6 164790174 164790478 -24489076 - AluSp SINE Alu -12 301 1 806 109 0 95 chr6 164790480 164790627 -24488927 - AluJo/FLAM SINE Alu -169 133 1 236 242 87 56 chr6 164790809 164790970 -24488584 + L2 LINE L2 3077 3242 -71 214 196 0 59 chr6 164792058 164792109 -24487445 + L2 LINE L2 3255 3302 -11 426 83 17 0 chr6 164792297 164792357 -24487197 + U7 snRNA snRNA 2 62 -1 185 347 32 42 chr6 164792583 164792678 -24486876 + L2 LINE L2 3214 3307 -6 1133 107 0 0 chr6 164793192 164793342 -24486212 + AluSg/x SINE Alu 143 292 -20 189 315 103 27 chr6 164794172 164794318 -24485236 + MIR SINE MIR 95 251 -11 228 265 84 36 chr6 164794568 164794651 -24484903 + MIR SINE MIR 82 168 -94 328 224 39 90 chr6 164795441 164795597 -24483957 + L1MC4a LINE L1 5832 5979 -1829 1980 122 0 11 chr6 164795741 164796028 -24483526 - AluSg SINE Alu -26 284 1 876 208 6 0 chr6 164796403 164796571 -24482983 + FAM SINE Alu 1 169 -6 241 321 29 24 chr6 164796689 164796970 -24482584 - L1MCa LINE L1 -4512 1914 1479 1788 198 3 3 chr6 164796980 164797324 -24482230 - L1MD1 LINE L1 -8 6234 5891 1929 132 61 51 chr6 164797331 164797458 -24482096 - Ricksha DNA DNA -9 3242 3118 1799 119 0 0 chr6 164797458 164797702 -24481852 - AluSx SINE Alu -9 303 60 2589 59 0 7 chr6 164797706 164798013 -24481541 - AluY SINE Alu -6 305 1 1929 132 61 51 chr6 164798013 164798289 -24481265 - Ricksha DNA DNA -135 3116 2830 431 142 97 62 chr6 164798296 164798409 -24481145 - MLT2B3 LTR ERVL -429 125 9 578 185 0 0 chr6 164798420 164798528 -24481026 - ERVL-B3 LTR ERVL -11 5753 5646 637 162 17 0 chr6 164798536 164798653 -24480901 - Ricksha DNA DNA -1062 119 1 2490 187 65 44 chr6 164798653 164798736 -24480818 - L1MD1 LINE L1 -343 5899 5819 2139 106 18 0 chr6 164798736 164799044 -24480510 - AluSx SINE Alu 0 313 1 2490 187 65 44 chr6 164799044 164799648 -24479906 - L1MD1 LINE L1 -423 5819 5189 1846 149 17 17 chr6 164799648 164799950 -24479604 - AluJo SINE Alu -10 302 1 2490 187 65 44 chr6 164799950 164800164 -24479390 - L1MD1 LINE L1 -1053 5189 4981 1219 157 34 43 chr6 164800301 164800536 -24479018 - AluJo SINE Alu -79 233 1 317 175 16 0 chr6 164800562 164800625 -24478929 + L1MC5 LINE L1 7165 7228 -733 941 230 124 24 chr6 164800842 164801308 -24478246 + L1MC5 LINE L1 7414 7926 -35 26 0 0 0 chr6 164802156 164802182 -24477372 + AT_rich Low_complexity Low_complexity 1 26 0 213 39 0 0 chr6 164802556 164802582 -24476972 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2237 37 44 7 chr6 164803085 164803357 -24476197 - AluY SINE Alu -13 298 17 36 40 0 0 chr6 164805675 164805725 -24473829 + AT_rich Low_complexity Low_complexity 1 50 0 1649 191 3 3 chr6 164805972 164806254 -24473300 + AluJo SINE Alu 1 282 -30 786 171 79 7 chr6 164806968 164807120 -24472434 + FRAM SINE Alu 1 155 -21 1938 148 10 3 chr6 164807581 164807886 -24471668 - AluJo SINE Alu -5 307 1 864 299 147 9 chr6 164807890 164808238 -24471316 + L2 LINE L2 2552 2947 -367 317 243 142 74 chr6 164808236 164808330 -24471224 - MIR SINE MIR -104 158 49 * 2246 95 7 0 chr6 164808330 164808625 -24470929 + AluSg SINE Alu 1 297 -13 317 243 142 74 chr6 164808625 164808678 -24470876 - MIR SINE MIR -213 49 1 2221 122 0 10 chr6 164808886 164809197 -24470357 + AluSc SINE Alu 1 308 -1 2114 124 7 0 chr6 164809607 164809897 -24469657 - AluSx SINE Alu -20 292 1 34 55 0 0 chr6 164810955 164811010 -24468544 + AT_rich Low_complexity Low_complexity 1 55 0 704 206 0 0 chr6 164811402 164811528 -24468026 + FLAM_A SINE Alu 8 133 -9 416 314 63 39 chr6 164811645 164811852 -24467702 - L3 LINE CR1 -13 1564 1353 3069 191 65 21 chr6 164812300 164813686 -24465868 - L1MB7 LINE L1 -9 6175 4582 549 219 120 24 chr6 164813858 164814090 -24465464 - L1M1 LINE L1 -473 5832 5586 468 233 132 13 chr6 164814090 164814249 -24465305 - MLT1I LTR MaLR 0 409 232 432 269 8 8 chr6 164814326 164814445 -24465109 - MLT1I LTR MaLR -288 121 3 305 151 50 101 chr6 164814683 164814802 -24464752 - L1M1 LINE L1 -2382 5426 5314 2328 97 0 3 chr6 164814969 164815268 -24464286 - AluSc SINE Alu -11 298 1 2435 89 3 0 chr6 164815378 164815680 -24463874 + AluSp SINE Alu 1 303 -10 187 361 16 16 chr6 164816139 164816200 -24463354 - L2 LINE L2 -62 3210 3150 1476 256 116 70 chr6 164817008 164817578 -24461976 - HAL1 LINE L1 -745 1762 1139 1562 159 18 14 chr6 164817578 164817855 -24461699 - AluJb SINE Alu -34 278 1 1476 256 116 70 chr6 164817855 164818136 -24461418 - HAL1 LINE L1 -1368 1139 872 1627 147 0 4 chr6 164818175 164818407 -24461147 - AluSx SINE Alu -32 280 50 371 323 104 52 chr6 164818471 164818799 -24460755 - HAL1 LINE L1 -2116 391 47 1975 223 108 38 chr6 164819888 164820770 -24458784 - L1MCc LINE L1 -4887 1536 1058 213 246 211 0 chr6 164820800 164820857 -24458697 + L2 LINE L2 2748 2816 -498 1096 214 10 0 chr6 164820857 164821053 -24458501 - MER58A DNA MER1_type -22 202 5 310 253 30 50 chr6 164821103 164821202 -24458352 + L2 LINE L2 3141 3237 -35 225 327 91 0 chr6 164821236 164821401 -24458153 - L1MDa LINE L1 -3890 2650 2471 301 223 96 111 chr6 164821897 164822050 -24457504 - L1MDa LINE L1 -4877 1653 1499 2143 106 0 3 chr6 164822050 164822333 -24457221 - AluSx SINE Alu -30 282 1 301 223 96 111 chr6 164822333 164822556 -24456998 - L1MDa LINE L1 -5031 1499 1283 2165 118 3 0 chr6 164823174 164823471 -24456083 + AluSq SINE Alu 1 298 -15 21 36 0 0 chr6 164824557 164824585 -24454969 + AT_rich Low_complexity Low_complexity 1 28 0 271 231 49 56 chr6 164825858 164826001 -24453553 + L1M4c LINE L1 2018 2159 -4225 529 219 61 6 chr6 164826042 164826206 -24453348 + L1M4c LINE L1 2279 2451 -3933 5578 196 104 48 chr6 164827298 164828967 -24450587 + L1M4c LINE L1 2436 4197 -2185 2209 101 3 3 chr6 164828967 164829263 -24450291 + AluSp SINE Alu 1 296 -17 359 226 71 0 chr6 164829270 164829354 -24450200 - L1MC4 LINE L1 -1339 6703 6614 381 43 0 0 chr6 164829354 164829401 -24450153 + (CA)n Simple_repeat Simple_repeat 2 48 0 727 143 109 0 chr6 164829401 164829548 -24450006 + L1M4c LINE L1 4208 4370 -2012 2200 164 37 74 chr6 164829556 164829990 -24449564 - MSTB LTR MaLR -8 418 1 6231 177 55 6 chr6 164829990 164832060 -24447494 + L1MA9 LINE L1 4367 6542 -6 441 197 0 0 chr6 164832525 164832596 -24446958 + MER58A DNA MER1_type 2 72 -35 2194 86 7 0 chr6 164832712 164833031 -24446523 - AluSp SINE Alu 0 321 1 21 36 0 0 chr6 164833071 164833099 -24446455 + AT_rich Low_complexity Low_complexity 1 28 0 463 158 63 63 chr6 164833400 164833527 -24446027 + L1MC5 LINE L1 7806 7932 -29 370 273 20 100 chr6 164834854 164835004 -24444550 - MIR3 SINE MIR -61 147 10 22 35 0 0 chr6 164837589 164837618 -24441936 + AT_rich Low_complexity Low_complexity 1 29 0 2013 131 7 0 chr6 164838720 164839029 -24440525 + AluSx SINE Alu 1 311 0 234 0 0 0 chr6 164839364 164839390 -24440164 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1699 133 19 11 chr6 164839409 164839672 -24439882 - AluSx SINE Alu -29 283 19 217 257 76 57 chr6 164839686 164839791 -24439763 + MIR SINE MIR 81 187 -75 729 206 23 15 chr6 164840412 164840543 -24439011 - FLAM_A SINE Alu -1 132 1 195 42 0 0 chr6 164840548 164840572 -24438982 + (TA)n Simple_repeat Simple_repeat 2 25 0 15361 115 39 42 chr6 164841066 164841417 -24438137 + Tigger1 DNA MER2_type 1 352 -2066 2202 102 0 3 chr6 164841417 164841711 -24437843 - AluSc SINE Alu -16 293 1 15361 115 39 42 chr6 164841711 164843785 -24435769 + Tigger1 DNA MER2_type 352 2418 0 693 180 57 0 chr6 164843859 164843981 -24435573 - FLAM_A SINE Alu -3 130 2 2203 120 3 0 chr6 164845032 164845333 -24434221 - AluSx SINE Alu -10 302 1 297 219 24 12 chr6 164845608 164845690 -24433864 + L2 LINE L2 3219 3301 -12 2429 228 103 15 chr6 164845850 164846450 -24433104 - MER82 DNA MER2_type 0 653 1 821 210 40 0 chr6 164846780 164846956 -24432598 + L1ME LINE L1 5641 5823 -343 1135 154 0 82 chr6 164846957 164847190 -24432364 + AluJb SINE Alu 84 297 -15 1229 161 10 0 chr6 164847906 164848111 -24431443 + MER2 DNA MER2_type 1 207 -138 1651 166 3 11 chr6 164848118 164848427 -24431127 - AluJo SINE Alu 0 307 1 305 203 38 25 chr6 164848681 164848760 -24430794 - L2 LINE L2 -26 3287 3208 1496 166 41 27 chr6 164848943 164849238 -24430316 + AluJo SINE Alu 4 302 -10 468 0 0 0 chr6 164849599 164849651 -24429903 + (TC)n Simple_repeat Simple_repeat 1 52 0 216 0 0 0 chr6 164850579 164850603 -24428951 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2145 110 3 0 chr6 164850605 164850887 -24428667 - AluSq SINE Alu -30 283 1 383 283 96 0 chr6 164851054 164851231 -24428323 - LTR16B LTR ERVL -155 309 116 303 294 28 0 chr6 164851438 164851547 -24428007 - HERV16 LTR ERVL -1491 4273 4162 2813 320 38 39 chr6 164851695 164853996 -24425558 - HERV16 LTR ERVL -1788 3976 1599 476 281 89 0 chr6 164854104 164854307 -24425247 - HERV16 LTR ERVL -3621 1375 1155 830 167 21 7 chr6 164854311 164854455 -24425099 - FRAM SINE Alu -21 155 10 1250 318 83 9 chr6 164854459 164855106 -24424448 - HERV16 LTR ERVL -3841 1155 461 189 300 192 8 chr6 164855483 164855613 -24423941 + MIR SINE MIR 91 244 -18 250 321 57 13 chr6 164856396 164856555 -24422999 + L1M4 LINE L1 5195 5360 -786 2097 81 11 11 chr6 164856966 164857249 -24422305 - AluSq SINE Alu -30 283 1 348 244 62 56 chr6 164857297 164857457 -24422097 + L1M4 LINE L1 3840 4000 -2146 1469 150 67 8 chr6 164857602 164857855 -24421699 + AluSx SINE Alu 35 302 -10 226 184 0 0 chr6 164858648 164858686 -24420868 - MIR3 SINE MIR -9 199 162 2150 106 0 0 chr6 164859015 164859331 -24420223 + AluSx SINE Alu 1 316 0 603 319 42 12 chr6 164859460 164859701 -24419853 - MIR SINE MIR -1 261 14 281 266 250 0 chr6 164859800 164859924 -24419630 + MIR SINE MIR 72 226 -36 2167 149 49 5 chr6 164860100 164860580 -24418974 + L1PA8A LINE L1 5433 5974 -157 951 130 0 0 chr6 164860580 164860718 -24418836 + FLAM_C SINE Alu 1 138 -5 2282 82 4 0 chr6 164860722 164861001 -24418553 + AluSp SINE Alu 15 294 -19 2256 88 12 41 chr6 164861387 164861707 -24417847 - AluSx SINE Alu -1 311 1 506 224 28 0 chr6 164862399 164862506 -24417048 + MER81 DNA DNA 2 111 -3 1052 82 0 88 chr6 164862945 164863104 -24416450 - AluSx SINE Alu -159 153 9 6343 174 6 35 chr6 164863125 164864555 -24414999 - L1P5 LINE L1 -370 5784 4431 2179 119 6 3 chr6 164864555 164864867 -24414687 - AluSp SINE Alu 0 313 1 6343 174 6 35 chr6 164864867 164865851 -24413703 - L1P5 LINE L1 -1723 4431 3420 2328 110 3 0 chr6 164866259 164866560 -24412994 - AluSp SINE Alu -11 302 1 292 250 114 0 chr6 164866645 164866733 -24412821 + MIR SINE MIR 87 184 -78 219 219 302 10 chr6 164866795 164866891 -24412663 + L2 LINE L2 3190 3313 0 529 280 133 45 chr6 164868307 164868493 -24411061 - L1ME4a LINE L1 0 6121 5953 2360 88 0 0 chr6 164868493 164868839 -24410715 - AluSp SINE Alu 0 346 1 529 280 133 45 chr6 164868839 164868983 -24410571 - L1ME4a LINE L1 -168 5953 5761 516 292 193 23 chr6 164869076 164869377 -24410177 + MLT1I LTR MaLR 54 405 -4 425 152 59 32 chr6 164870144 164870586 -24408968 + (CAGT)n Simple_repeat Simple_repeat 1 454 0 268 196 68 0 chr6 164870608 164870756 -24408798 + (CAGT)n Simple_repeat Simple_repeat 3 160 0 298 128 45 60 chr6 164870841 164870974 -24408580 + (CAGT)n Simple_repeat Simple_repeat 2 132 0 504 252 71 67 chr6 164871579 164871789 -24407765 + MLT1K LTR MaLR 54 264 -324 770 227 29 6 chr6 164872378 164872550 -24407004 + MER45A DNA AcHobo 3 178 0 1973 113 41 34 chr6 164873261 164873554 -24406000 - AluSg SINE Alu -15 295 1 2453 73 6 16 chr6 164874024 164874338 -24405216 + AluY SINE Alu 1 311 0 1086 135 9 40 chr6 164874345 164874560 -24404994 + AluJb SINE Alu 1 278 -34 831 165 0 85 chr6 164875337 164875456 -24404098 + FRAM SINE Alu 26 129 -183 2436 91 0 3 chr6 164875456 164875753 -24403801 - AluSx SINE Alu -16 296 1 831 165 0 85 chr6 164875753 164875797 -24403757 + FRAM SINE Alu 129 175 -1 353 139 20 20 chr6 164875894 164875995 -24403559 + (TG)n Simple_repeat Simple_repeat 1 101 0 288 203 34 0 chr6 164876370 164876429 -24403125 + MER112 DNA MER1_type 186 246 -14 332 244 100 69 chr6 164878952 164879019 -24400535 + MER5A DNA MER1_type 3 66 -123 1736 169 3 52 chr6 164879019 164879327 -24400227 + AluJb SINE Alu 3 295 -17 332 244 100 69 chr6 164879327 164879396 -24400158 + MER5A DNA MER1_type 66 147 -42 1806 135 0 12 chr6 164879396 164879655 -24399899 + AluSx SINE Alu 40 295 -17 332 244 100 69 chr6 164879655 164879677 -24399877 + MER5A DNA MER1_type 147 167 -22 552 195 47 23 chr6 164879774 164879902 -24399652 + FLAM_A SINE Alu 1 131 -2 353 311 44 28 chr6 164881023 164881203 -24398351 - MIR SINE MIR -74 188 6 282 202 191 11 chr6 164881305 164881399 -24398155 - L2 LINE L2 -2 3270 3160 999 170 13 0 chr6 164881770 164881929 -24397625 + FRAM SINE Alu 1 161 -15 2209 106 3 0 chr6 164881986 164882307 -24397247 + AluY SINE Alu 1 322 0 27 0 0 0 chr6 164882625 164882652 -24396902 + GC_rich Low_complexity Low_complexity 1 27 0 237 392 8 0 chr6 164883711 164883831 -24395723 - L3 LINE CR1 -196 1381 1261 186 133 0 0 chr6 164884107 164884137 -24395417 + (T)n Simple_repeat Simple_repeat 1 30 0 2066 160 3 0 chr6 164884139 164884445 -24395109 - AluJb SINE Alu -1 311 5 271 295 0 0 chr6 164884480 164884558 -24394996 - L1ME3A LINE L1 -239 5931 5854 978 264 57 53 chr6 164884625 164885212 -24394342 - L1ME3A LINE L1 -506 5656 5069 1168 195 91 0 chr6 164885939 164886170 -24393384 + Tigger3(Golem) DNA MER2_type 2 253 -2776 878 112 309 0 chr6 164886195 164886373 -24393181 + MER46A DNA MER2_type 1 233 -3 1276 183 8 42 chr6 164886428 164886567 -24392987 + AluJb SINE Alu 1 130 -182 2195 123 17 0 chr6 164886567 164886869 -24392685 + AluSq SINE Alu 1 307 -6 1276 183 8 42 chr6 164886869 164886970 -24392584 + AluJb SINE Alu 130 233 -79 2335 118 0 0 chr6 164887075 164887381 -24392173 + AluSc SINE Alu 1 306 -3 439 214 47 135 chr6 164887589 164887804 -24391750 - L2 LINE L2 0 3313 3118 2016 150 0 0 chr6 164888106 164888418 -24391136 + AluSx SINE Alu 1 312 0 1995 178 32 28 chr6 164888535 164889082 -24390472 + MLT2A2 LTR ERVL 1 553 -1 217 311 67 49 chr6 164889278 164889442 -24390112 - L2 LINE L2 -461 2853 2687 2214 89 0 0 chr6 164889443 164889714 -24389840 + AluSg SINE Alu 1 271 -39 843 316 101 31 chr6 164889716 164890269 -24389285 - L2 LINE L2 -716 2598 2007 264 308 98 72 chr6 164890451 164890727 -24388827 + L2 LINE L2 2990 3272 0 2394 104 0 0 chr6 164891090 164891397 -24388157 + AluSx SINE Alu 5 311 -1 2194 112 0 3 chr6 164891487 164891781 -24387773 + AluY SINE Alu 1 293 -18 2293 92 0 0 chr6 164892610 164892950 -24386604 + AluSg SINE Alu 1 340 0 1836 184 0 10 chr6 164893269 164893568 -24385986 - AluJb SINE Alu -16 296 1 372 242 142 0 chr6 164893583 164893703 -24385851 - MIR SINE MIR -10 252 116 2433 102 3 0 chr6 164893986 164894291 -24385263 - AluSp SINE Alu -3 310 5 2503 57 0 3 chr6 164895190 164895488 -24384066 + AluY SINE Alu 1 297 -14 248 203 31 0 chr6 164895992 164896056 -24383498 + MIR SINE MIR 56 121 -141 2146 123 10 3 chr6 164896092 164896400 -24383154 + AluSx SINE Alu 1 310 -2 1078 163 0 0 chr6 164896400 164896572 -24382982 + AluSc SINE Alu 132 303 -6 282 291 173 0 chr6 164896625 164896735 -24382819 - MIR3 SINE MIR -21 187 59 704 230 29 29 chr6 164896737 164896946 -24382608 - MER3 DNA MER1_type 0 209 1 516 188 99 0 chr6 164897666 164897767 -24381787 + MLT1D LTR MaLR 249 359 -146 209 270 180 36 chr6 164898780 164898891 -24380663 - MIR3 SINE MIR 0 208 82 192 284 137 0 chr6 164899792 164899887 -24379667 - MIR SINE MIR -62 146 39 599 256 142 9 chr6 164899957 164900176 -24379378 - MIR SINE MIR -1 261 14 1310 143 239 0 chr6 164900952 164901245 -24378309 + MLT1B LTR MaLR 7 369 -21 2295 86 10 0 chr6 164901450 164901742 -24377812 + AluSq SINE Alu 1 295 -18 22 35 0 0 chr6 164901925 164901954 -24377600 + AT_rich Low_complexity Low_complexity 1 29 0 321 307 29 50 chr6 164902098 164902238 -24377316 - L1MC4a LINE L1 -1815 5993 5857 2191 123 3 0 chr6 164902239 164902531 -24377023 + AluSg SINE Alu 1 293 -17 1821 201 0 0 chr6 164902540 164902849 -24376705 + AluJo SINE Alu 1 309 -3 274 309 24 0 chr6 164902876 164902960 -24376594 + L2 LINE L2 3221 3306 -7 276 30 0 0 chr6 164902961 164902994 -24376560 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 182 330 84 28 chr6 164903286 164903501 -24376053 + L2 LINE L2 1764 1990 -1324 2408 181 17 31 chr6 164903818 164903902 -24375652 + Charlie1b DNA MER1_type 1 85 -2676 2295 104 3 0 chr6 164903902 164904200 -24375354 + AluSg SINE Alu 1 299 -11 2408 181 17 31 chr6 164904200 164904633 -24374921 + Charlie1b DNA MER1_type 85 511 -12 1871 161 3 25 chr6 164905094 164905411 -24374143 + AluJo SINE Alu 3 312 0 785 168 0 15 chr6 164905717 164905848 -24373706 - FLAM_A SINE Alu -1 132 4 367 314 112 8 chr6 164905848 164906090 -24373464 + L2 LINE L2 2321 2587 -727 1267 128 39 0 chr6 164906292 164906496 -24373058 + L1PA15 LINE L1 5774 5985 -180 2038 96 103 0 chr6 164906497 164906779 -24372775 + AluSp SINE Alu 1 311 -2 249 336 9 9 chr6 164907258 164907368 -24372186 + GA-rich Low_complexity Low_complexity 1 110 0 2098 128 7 3 chr6 164907391 164907688 -24371866 - AluSx SINE Alu -14 298 1 215 241 195 11 chr6 164907737 164907824 -24371730 - MIR SINE MIR -95 167 65 226 291 25 13 chr6 164908811 164908890 -24370664 - MIR SINE MIR -110 152 73 1530 180 31 3 chr6 164909327 164909644 -24369910 - L1MB3 LINE L1 0 6183 5858 1360 155 0 14 chr6 164909646 164909865 -24369689 - AluJo SINE Alu -96 216 1 737 218 0 0 chr6 164909866 164910008 -24369546 - L1MB3 LINE L1 -343 5828 5687 236 250 0 17 chr6 164911850 164911910 -24367644 - MIR SINE MIR -103 105 47 21 0 0 0 chr6 164912033 164912054 -24367500 + AT_rich Low_complexity Low_complexity 1 21 0 2105 142 14 0 chr6 164912054 164912349 -24367205 + AluJb SINE Alu 1 299 -13 2223 89 58 0 chr6 164912493 164912785 -24366769 - AluSg SINE Alu -1 309 1 382 285 70 6 chr6 164912843 164913001 -24366553 - MIR SINE MIR -76 186 19 2186 109 0 30 chr6 164913102 164913404 -24366150 + AluSq SINE Alu 1 293 -20 2176 108 59 0 chr6 164914267 164914555 -24364999 + AluSg SINE Alu 1 305 -5 480 253 68 35 chr6 164915043 164915320 -24364234 - L1MB3 LINE L1 -578 5588 5293 1535 169 75 0 chr6 164915338 164915616 -24363938 - AluJo SINE Alu -9 303 5 322 267 12 23 chr6 164915622 164915708 -24363846 - L1MB3 LINE L1 -1118 5028 4944 899 238 43 19 chr6 164915762 164915972 -24363582 + MIR SINE MIR 19 233 -29 1287 184 59 83 chr6 164916345 164916509 -24363045 + MLT1C LTR MaLR 6 172 -295 2077 112 0 48 chr6 164916509 164916821 -24362733 - AluSq SINE Alu -14 299 3 1287 184 59 83 chr6 164916821 164917064 -24362490 + MLT1C LTR MaLR 172 403 -64 1125 171 17 0 chr6 164917064 164917262 -24362292 - AluJo SINE Alu 0 305 105 25 51 0 0 chr6 164917264 164917303 -24362251 + AT_rich Low_complexity Low_complexity 1 39 0 2738 26 7 0 chr6 164918336 164918643 -24360911 - AluY SINE Alu -2 309 1 698 209 0 0 chr6 164918643 164918758 -24360796 - AluJo SINE Alu -196 116 2 316 200 0 0 chr6 164918763 164918818 -24360736 + MLT1C LTR MaLR 413 467 0 2038 122 20 43 chr6 164920201 164920504 -24359050 - AluSx SINE Alu -16 296 1 2155 140 0 3 chr6 164920737 164921037 -24358517 + AluSq SINE Alu 1 299 -14 2164 108 14 0 chr6 164921479 164921792 -24357762 - AluSq SINE Alu 0 317 1 1390 121 0 5 chr6 164922499 164922689 -24356865 - AluSp SINE Alu -18 295 107 650 271 131 33 chr6 164922742 164923516 -24356038 - L1MEd LINE L1 -4789 1340 498 2428 77 0 19 chr6 164923612 164923923 -24355631 - AluSg SINE Alu -5 305 1 1521 127 4 22 chr6 164924224 164924452 -24355102 + AluSx SINE Alu 1 224 -88 399 318 185 10 chr6 164924691 164924886 -24354668 - MIR SINE MIR -1 261 33 846 224 71 74 chr6 164924922 164925261 -24354293 + MER46C DNA MER2_type 1 338 0 599 220 92 9 chr6 164925734 164925961 -24353593 + L1M4 LINE L1 4625 4870 -1276 2487 82 0 0 chr6 164926039 164926342 -24353212 - AluSc SINE Alu -6 303 1 477 296 144 25 chr6 164926342 164926619 -24352935 + L1M4 LINE L1 4892 5201 -945 606 228 8 0 chr6 164926619 164926742 -24352812 + FLAM_A SINE Alu 16 139 -3 347 256 0 33 chr6 164926753 164926843 -24352711 + L1M4 LINE L1 5218 5304 -842 379 182 15 0 chr6 164926844 164926910 -24352644 + AluS SINE Alu 4 70 -233 1410 161 0 0 chr6 164927010 164927228 -24352326 + AluSg/x SINE Alu 94 311 -1 185 288 41 27 chr6 164927492 164927565 -24351989 + L2 LINE L2 3193 3266 -6 580 269 122 42 chr6 164927632 164927870 -24351684 + MIR SINE MIR 6 262 0 250 357 19 51 chr6 164927884 164928041 -24351513 - MIR3 SINE MIR -41 167 16 2240 108 3 7 chr6 164928126 164928422 -24351132 + AluSx SINE Alu 1 295 -17 2266 99 0 0 chr6 164929327 164929644 -24349910 + AluSg SINE Alu 1 317 0 21 57 0 0 chr6 164929766 164929801 -24349753 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 164929837 164929858 -24349696 + AT_rich Low_complexity Low_complexity 1 21 0 207 292 0 0 chr6 164929959 164930007 -24349547 + (TATG)n Simple_repeat Simple_repeat 3 50 0 482 241 123 64 chr6 164930470 164930585 -24348969 - MIR SINE MIR -2 260 153 2058 139 23 0 chr6 164930585 164930888 -24348666 + AluSx SINE Alu 1 310 -2 482 241 123 64 chr6 164930888 164930992 -24348562 - MIR SINE MIR -109 153 28 1551 208 31 7 chr6 164931483 164931772 -24347782 + AluJo SINE Alu 1 296 -16 2003 161 35 0 chr6 164932090 164932456 -24347098 + L1MC2 LINE L1 5453 5831 -513 1818 188 10 7 chr6 164932456 164932765 -24346789 + AluJo SINE Alu 1 310 -2 1345 124 55 9 chr6 164932772 164932990 -24346564 + AluJb SINE Alu 85 312 0 2330 97 3 10 chr6 164932991 164933302 -24346252 + AluSc SINE Alu 1 309 0 209 268 0 0 chr6 164933304 164933345 -24346209 + polypurine Low_complexity Low_complexity 5 45 0 2378 170 65 2 chr6 164933349 164933814 -24345740 + L1MC2 LINE L1 5840 6333 -11 1018 243 110 59 chr6 164933824 164933891 -24345663 + L1MC4 LINE L1 7039 7101 -941 2329 99 0 0 chr6 164933891 164934184 -24345370 + AluSg SINE Alu 4 296 -14 1018 243 110 59 chr6 164934184 164934589 -24344965 + L1MC4 LINE L1 7101 7535 -507 2321 99 3 3 chr6 164934591 164934895 -24344659 + AluSx SINE Alu 1 304 -8 848 144 0 15 chr6 164934895 164935027 -24344527 + AluSq SINE Alu 134 263 -50 421 148 69 28 chr6 164935404 164935836 -24343718 + (CAGT)n Simple_repeat Simple_repeat 1 450 0 268 196 68 0 chr6 164935858 164936006 -24343548 + (CAGT)n Simple_repeat Simple_repeat 3 160 0 298 128 45 60 chr6 164936091 164936224 -24343330 + (CAGT)n Simple_repeat Simple_repeat 2 132 0 463 203 73 51 chr6 164936829 164937030 -24342524 + MLT1K LTR MaLR 54 249 -339 830 227 29 6 chr6 164937628 164937800 -24341754 + MER45A DNA AcHobo 3 178 0 1964 113 41 34 chr6 164938511 164938804 -24340750 - AluSg SINE Alu -15 295 1 2445 73 6 16 chr6 164939274 164939588 -24339966 + AluY SINE Alu 1 311 0 1081 135 9 40 chr6 164939595 164939810 -24339744 + AluJb SINE Alu 1 278 -34 835 165 0 85 chr6 164940587 164940706 -24338848 + FRAM SINE Alu 26 129 -183 2442 88 0 3 chr6 164940706 164941003 -24338551 - AluSx SINE Alu -16 296 1 835 165 0 85 chr6 164941003 164941047 -24338507 + FRAM SINE Alu 129 175 -1 458 130 17 17 chr6 164941144 164941259 -24338295 + (TG)n Simple_repeat Simple_repeat 1 115 0 282 203 34 0 chr6 164941634 164941693 -24337861 + MER112 DNA MER1_type 186 246 -14 180 286 114 29 chr6 164943738 164943843 -24335711 - MIR SINE MIR -147 115 2 371 244 100 69 chr6 164944216 164944283 -24335271 + MER5A DNA MER1_type 3 66 -123 1743 167 3 49 chr6 164944283 164944589 -24334965 + AluJb SINE Alu 3 294 -18 371 244 100 69 chr6 164944589 164944658 -24334896 + MER5A DNA MER1_type 66 147 -42 1797 135 0 12 chr6 164944658 164944917 -24334637 + AluSx SINE Alu 40 295 -17 371 244 100 69 chr6 164944917 164944939 -24334615 + MER5A DNA MER1_type 147 167 -22 596 195 47 23 chr6 164945036 164945164 -24334390 + FLAM_A SINE Alu 1 131 -2 377 294 50 33 chr6 164946285 164946465 -24333089 - MIR SINE MIR -74 188 6 316 202 191 11 chr6 164946567 164946661 -24332893 - L2 LINE L2 -2 3270 3160 994 170 13 0 chr6 164947033 164947192 -24332362 + FRAM SINE Alu 1 161 -15 21 36 0 0 chr6 164947219 164947247 -24332307 + AT_rich Low_complexity Low_complexity 1 28 0 2202 106 3 0 chr6 164947250 164947576 -24331978 + AluY SINE Alu 1 327 0 27 0 0 0 chr6 164947894 164947921 -24331633 + GC_rich Low_complexity Low_complexity 1 27 0 264 383 8 0 chr6 164948980 164949100 -24330454 - L3 LINE CR1 -196 1381 1261 222 118 0 0 chr6 164949376 164949410 -24330144 + (T)n Simple_repeat Simple_repeat 1 34 0 2030 164 3 0 chr6 164949412 164949717 -24329837 - AluJb SINE Alu -2 310 5 263 295 0 0 chr6 164949752 164949830 -24329724 - L1ME3A LINE L1 -239 5931 5854 968 262 60 53 chr6 164949897 164950481 -24329073 - L1ME3A LINE L1 -506 5656 5069 1172 190 91 0 chr6 164951213 164951445 -24328109 + Tigger3(Golem) DNA MER2_type 1 253 -2776 974 111 304 0 chr6 164951470 164951651 -24327903 + MER46A DNA MER2_type 1 236 0 1299 174 8 42 chr6 164951704 164951843 -24327711 + AluJb SINE Alu 1 130 -182 2197 118 16 0 chr6 164951843 164952147 -24327407 + AluSq SINE Alu 1 309 -4 1299 174 8 42 chr6 164952147 164952248 -24327306 + AluJb SINE Alu 130 233 -79 2283 129 0 0 chr6 164952353 164952662 -24326892 + AluSc SINE Alu 1 309 0 476 242 14 102 chr6 164952870 164953085 -24326469 - L2 LINE L2 0 3313 3118 2040 143 0 0 chr6 164953387 164953698 -24325856 + AluSx SINE Alu 1 311 0 1944 178 32 28 chr6 164953818 164954365 -24325189 + MLT2A2 LTR ERVL 1 553 -1 245 287 73 55 chr6 164954561 164954725 -24324829 - L2 LINE L2 -461 2853 2687 2191 79 0 0 chr6 164954726 164954993 -24324561 + AluSg SINE Alu 1 267 -43 940 315 101 31 chr6 164954999 164955552 -24324002 - L2 LINE L2 -716 2598 2007 316 308 98 72 chr6 164955734 164956010 -24323544 + L2 LINE L2 2990 3272 0 2368 105 0 0 chr6 164956373 164956678 -24322876 + AluSx SINE Alu 5 309 -3 2167 107 0 23 chr6 164956768 164957067 -24322487 + AluSc SINE Alu 1 292 -17 2279 92 0 0 chr6 164957896 164958211 -24321343 + AluSg SINE Alu 1 315 0 1827 184 0 10 chr6 164958530 164958829 -24320725 - AluJb SINE Alu -16 296 1 395 242 142 0 chr6 164958844 164958964 -24320590 - MIR SINE MIR -10 252 116 2461 95 3 0 chr6 164959247 164959552 -24320002 - AluSp SINE Alu -3 310 5 2500 57 0 3 chr6 164960451 164960749 -24318805 + AluY SINE Alu 1 297 -14 269 233 52 0 chr6 164961223 164961317 -24318237 + MIR SINE MIR 20 122 -86 2137 123 10 3 chr6 164961353 164961661 -24317893 + AluSx SINE Alu 1 310 -2 1067 168 0 0 chr6 164961661 164961834 -24317720 + AluSc SINE Alu 132 304 -5 329 309 132 20 chr6 164961887 164961999 -24317555 - MIR3 SINE MIR -21 187 52 770 225 29 29 chr6 164961999 164962208 -24317346 - MER3 DNA MER1_type 0 209 1 329 309 132 20 chr6 164962208 164962247 -24317307 - MIR3 SINE MIR -156 52 19 504 188 99 0 chr6 164962928 164963029 -24316525 + MLT1D LTR MaLR 249 359 -146 222 264 182 27 chr6 164964042 164964152 -24315402 - MIR3 SINE MIR 0 208 82 584 256 142 9 chr6 164965219 164965438 -24314116 - MIR SINE MIR -1 261 14 1362 130 242 3 chr6 164966211 164966504 -24313050 + MLT1B LTR MaLR 7 369 -21 2282 85 10 0 chr6 164966709 164967002 -24312552 + AluSq SINE Alu 1 296 -17 22 35 0 0 chr6 164967186 164967215 -24312339 + AT_rich Low_complexity Low_complexity 1 29 0 2132 127 3 0 chr6 164967500 164967791 -24311763 + AluSg SINE Alu 1 292 -18 1764 189 0 0 chr6 164967800 164968086 -24311468 + AluJo SINE Alu 1 286 -26 267 31 0 0 chr6 164968086 164968118 -24311436 + (AATAG)n Simple_repeat Simple_repeat 4 35 0 246 228 51 25 chr6 164968151 164968230 -24311324 + L2 LINE L2 3185 3265 -7 276 30 0 0 chr6 164968231 164968264 -24311290 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2555 181 17 31 chr6 164969088 164969172 -24310382 + Charlie1b DNA MER1_type 1 85 -2676 2275 101 3 0 chr6 164969172 164969468 -24310086 + AluSg SINE Alu 1 297 -13 2555 181 17 31 chr6 164969468 164969901 -24309653 + Charlie1b DNA MER1_type 85 511 -12 1828 161 3 25 chr6 164970362 164970679 -24308875 + AluJo SINE Alu 3 312 0 817 168 0 15 chr6 164970985 164971116 -24308438 - FLAM_A SINE Alu -1 132 4 321 310 112 8 chr6 164971116 164971358 -24308196 + L2 LINE L2 2321 2587 -727 1341 128 39 0 chr6 164971560 164971764 -24307790 + L1PA15 LINE L1 5774 5985 -180 1946 95 102 7 chr6 164971765 164972049 -24307505 + AluSp SINE Alu 1 311 -2 249 336 9 9 chr6 164972528 164972638 -24306916 + GA-rich Low_complexity Low_complexity 1 110 0 2065 128 7 3 chr6 164972661 164972958 -24306596 - AluSx SINE Alu -14 298 1 185 241 195 11 chr6 164973007 164973094 -24306460 - MIR SINE MIR -95 167 65 196 291 25 13 chr6 164974081 164974160 -24305394 - MIR SINE MIR -110 152 73 1613 180 31 3 chr6 164974597 164974914 -24304640 - L1MB3 LINE L1 0 6183 5858 1331 155 0 14 chr6 164974916 164975135 -24304419 - AluJo SINE Alu -96 216 1 750 218 0 0 chr6 164975136 164975278 -24304276 - L1MB3 LINE L1 -343 5828 5687 223 250 0 17 chr6 164977120 164977180 -24302374 - MIR SINE MIR -103 105 47 21 0 0 0 chr6 164977303 164977324 -24302230 + AT_rich Low_complexity Low_complexity 1 21 0 2069 142 14 0 chr6 164977324 164977619 -24301935 + AluJb SINE Alu 1 299 -13 942 121 114 0 chr6 164977763 164977912 -24301642 - AluSg/x SINE Alu -1 311 146 210 245 0 0 chr6 164979196 164979245 -24300309 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 337 85 0 0 chr6 164980463 164980510 -24299044 - L1P2 LINE L1 -654 5500 5454 3521 46 2 0 chr6 164980510 164980943 -24298611 + L1PA5 LINE L1 5720 6154 0 201 39 0 0 chr6 164980946 164980972 -24298582 + (TA)n Simple_repeat Simple_repeat 2 27 0 285 29 0 0 chr6 164980974 164981008 -24298546 + (GA)n Simple_repeat Simple_repeat 2 35 0 216 97 0 0 chr6 164981941 164981972 -24297582 + (T)n Simple_repeat Simple_repeat 1 31 0 43311 38 22 1 chr6 164981974 164988001 -24291553 - L1PA2 LINE L1 -1 6154 3 517 289 60 61 chr6 164988879 164989383 -24290171 + L2 LINE L2 2804 3313 0 2228 117 70 3 chr6 164989781 164990122 -24289432 - THE1B LTR MaLR 0 364 1 472 244 19 19 chr6 164990503 164990659 -24288895 - L2 LINE L2 0 3313 3158 381 279 79 36 chr6 164992612 164992777 -24286777 - MIR SINE MIR -72 190 19 381 281 35 0 chr6 164993066 164993180 -24286374 - MIR3 SINE MIR -21 187 70 21 0 0 0 chr6 164993364 164993385 -24286169 + AT_rich Low_complexity Low_complexity 1 21 0 182 283 0 19 chr6 164993982 164994035 -24285519 + L2 LINE L2 3220 3271 -42 187 284 15 45 chr6 164994063 164994130 -24285424 - L2 LINE L2 -18 3254 3190 345 191 48 60 chr6 164994180 164994264 -24285290 + L1M4b LINE L1 11 93 -6766 1283 203 68 131 chr6 164994277 164994819 -24284735 - MER67C LTR ERV1 -3 511 4 891 225 52 9 chr6 164994819 164995050 -24284504 + L1M4b LINE L1 116 356 -6503 717 223 65 16 chr6 164995072 164995256 -24284298 + MLT1E1 LTR MaLR 435 627 -27 183 248 204 9 chr6 164996077 164996190 -24283364 + MIR SINE MIR 35 169 -93 519 318 146 36 chr6 164996343 164996710 -24282844 + L2 LINE L2 2349 2795 -519 2072 104 59 3 chr6 164996710 164996999 -24282555 + AluSc SINE Alu 1 305 -4 519 318 146 36 chr6 164996999 164997165 -24282389 + L2 LINE L2 2795 2941 -373 363 312 147 19 chr6 164997207 164997473 -24282081 + L2 LINE L2 3008 3307 -6 2432 87 0 0 chr6 164997502 164997801 -24281753 - AluSc SINE Alu -10 299 1 201 279 0 15 chr6 164998543 164998611 -24280943 - MER5A DNA MER1_type 0 189 123 481 254 91 18 chr6 164998698 164998863 -24280691 + MER5B DNA MER1_type 2 178 0 263 167 15 0 chr6 164998909 164998975 -24280579 + (TTCA)n Simple_repeat Simple_repeat 1 67 0 446 253 82 18 chr6 164999011 164999181 -24280373 + MIR SINE MIR 78 258 -4 220 246 0 15 chr6 164999187 164999252 -24280302 - L2 LINE L2 0 3272 3209 184 386 68 8 chr6 165000507 165000639 -24278915 - L2 LINE L2 0 3272 3133 192 117 17 150 chr6 165000892 165000952 -24278602 - L2 LINE L2 -69 3244 3193 1059 197 14 36 chr6 165001099 165001322 -24278232 - MER20 DNA MER1_type 0 219 2 411 367 15 18 chr6 165001936 165002266 -24277288 + L2 LINE L2 2248 2576 -738 254 347 13 0 chr6 165002265 165002340 -24277214 + L2 LINE L2 3197 3272 0 * 2276 128 251 58 chr6 165002767 165003282 -24276272 - LTR18B LTR ERVL 0 614 1 2164 111 61 25 chr6 165003714 165004076 -24275478 + THE1C LTR MaLR 1 375 0 881 190 133 10 chr6 165004489 165004684 -24274870 - MER20 DNA MER1_type 0 219 1 1790 86 12 20 chr6 165005277 165005521 -24274033 - AluSc SINE Alu -67 242 1 2594 26 0 42 chr6 165005899 165006210 -24273344 + AluY SINE Alu 1 298 -13 205 296 0 28 chr6 165006361 165006432 -24273122 - MIR SINE MIR -1 261 193 281 385 45 0 chr6 165006433 165006633 -24272921 - MIR SINE MIR 0 262 54 1636 275 78 13 chr6 165006821 165007513 -24272041 - L1ME3A LINE L1 -139 6100 5346 552 276 110 67 chr6 165007604 165009814 -24269740 - L1ME3A LINE L1 -992 5223 2919 23 0 0 0 chr6 165009816 165009839 -24269715 + AT_rich Low_complexity Low_complexity 1 23 0 798 197 118 8 chr6 165009848 165010078 -24269476 + MSTA LTR MaLR 1 253 -173 7184 144 7 38 chr6 165010100 165011305 -24268249 + THE1-int LTR MaLR 173 1339 -241 1070 274 79 52 chr6 165011310 165011668 -24267886 - L1ME3A LINE L1 -3961 2435 2088 456 67 0 0 chr6 165011668 165011728 -24267826 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 1070 274 79 52 chr6 165011728 165011795 -24267759 - L1ME3A LINE L1 -4308 2088 2024 3308 165 50 6 chr6 165011795 165012442 -24267112 + L1MA4 LINE L1 5620 6294 -6 1070 274 79 52 chr6 165012442 165012850 -24266704 - L1ME3A LINE L1 -4372 2024 1578 300 316 42 58 chr6 165012864 165013430 -24266124 - L1MEc LINE L1 -4583 1813 1257 21 0 0 0 chr6 165013690 165013711 -24265843 + AT_rich Low_complexity Low_complexity 1 21 0 252 253 116 27 chr6 165015075 165015165 -24264389 + L1ME4a LINE L1 5955 6064 -57 6990 154 47 5 chr6 165015165 165016347 -24263207 + Tigger3b DNA MER2_type 1 1231 0 252 253 116 27 chr6 165016347 165016402 -24263152 + L1ME4a LINE L1 6064 6113 -8 497 253 64 52 chr6 165016915 165017148 -24262406 - MER106A DNA MER1_type 0 236 1 1921 133 21 0 chr6 165017307 165017593 -24261961 - AluSx SINE Alu -1 311 20 1226 106 0 0 chr6 165017622 165017783 -24261771 - AluSg/x SINE Alu -18 294 134 402 276 141 72 chr6 165017842 165018082 -24261472 - MLT1J2 LTR MaLR 0 450 181 2166 114 0 3 chr6 165018082 165018381 -24261173 - AluSx SINE Alu -14 298 1 402 276 141 72 chr6 165018381 165018459 -24261095 - MLT1J2 LTR MaLR -269 181 110 5462 146 97 122 chr6 165018473 165020214 -24259340 - pTR5 LTR ERV1 0 2438 741 731 36 0 0 chr6 165020508 165020592 -24258962 - AluY SINE Alu -13 298 215 4988 38 0 2 chr6 165021174 165021733 -24257821 - LTR6B LTR ERV1 0 558 1 2092 120 0 32 chr6 165021755 165022063 -24257491 - AluSq SINE Alu -15 298 1 24 0 0 0 chr6 165022382 165022406 -24257148 + AT_rich Low_complexity Low_complexity 1 24 0 332 248 98 13 chr6 165022455 165022608 -24256946 - LTR67 LTR ERVL -5 552 387 364 328 69 9 chr6 165023876 165024101 -24255453 + MIR SINE MIR 16 250 -12 1000 180 61 130 chr6 165025077 165025422 -24254132 + MER33 DNA MER1_type 3 323 -1 239 93 47 0 chr6 165025695 165025738 -24253816 + MLT1K LTR MaLR 374 418 -170 244 310 62 47 chr6 165026217 165026346 -24253208 - MIR3 SINE MIR -76 132 2 2205 103 7 7 chr6 165028634 165028934 -24250620 + AluSx SINE Alu 1 300 -12 589 51 0 0 chr6 165030751 165030830 -24248724 - L1PB1 LINE L1 -1 6150 6072 5809 139 13 8 chr6 165031206 165032227 -24247327 - L1PA16 LINE L1 0 6166 5137 3770 216 60 84 chr6 165032280 165034075 -24245479 - L1MD2 LINE L1 -2 6357 4597 574 235 164 86 chr6 165034191 165034659 -24244895 - L1MD2 LINE L1 -1538 4608 4104 969 164 6 6 chr6 165035052 165035229 -24244325 + L1MA4 LINE L1 6118 6294 -6 1321 180 11 93 chr6 165035264 165035352 -24244202 - L1MA9 LINE L1 -24 6288 6194 2312 67 3 19 chr6 165035352 165035666 -24243888 + AluY SINE Alu 3 311 0 1321 180 11 93 chr6 165035666 165035796 -24243758 - L1MA9 LINE L1 -118 6194 6107 5555 183 56 80 chr6 165035796 165037056 -24242498 + Tigger3b DNA MER2_type 1 1230 -1 1321 180 11 93 chr6 165037056 165037191 -24242363 - L1MA9 LINE L1 -205 6107 5963 1922 160 75 19 chr6 165037192 165037554 -24242000 + L1M2 LINE L1 5437 5818 -473 181 240 27 0 chr6 165037588 165037663 -24241891 + CT-rich Low_complexity Low_complexity 1 77 0 2221 113 0 3 chr6 165037831 165038123 -24241431 + AluSc SINE Alu 2 292 -17 422 244 2 2 chr6 165038123 165038570 -24240984 + (TA)n Simple_repeat Simple_repeat 1 447 0 235 106 0 0 chr6 165038586 165038633 -24240921 + LTR66 LTR ERVL 394 440 -170 1020 333 90 24 chr6 165038635 165039311 -24240243 - L2 LINE L2 -338 2976 2256 372 244 11 0 chr6 165039330 165039420 -24240134 - MER103 DNA DNA -72 94 4 754 206 20 27 chr6 165040061 165040207 -24239347 - Tigger3(Golem) DNA MER2_type 0 3038 2894 1110 136 106 5 chr6 165040209 165040408 -24239146 - Tigger3(Golem) DNA MER2_type -305 2724 2506 367 252 25 42 chr6 165040641 165040760 -24238794 + L2 LINE L2 2542 2658 -656 801 250 56 26 chr6 165040790 165041094 -24238460 - L1ME3A LINE L1 -5 6165 5853 230 262 65 42 chr6 165041115 165041283 -24238271 + L2 LINE L2 2694 2865 -449 2203 100 7 19 chr6 165041384 165041694 -24237860 + AluSx SINE Alu 1 306 -6 188 232 134 24 chr6 165041697 165041779 -24237775 - MIR SINE MIR -159 103 13 270 279 44 49 chr6 165042158 165042323 -24237231 + MIR SINE MIR 8 261 -1 183 407 49 0 chr6 165043537 165043618 -24235936 + MIR3 SINE MIR 74 158 -50 21 57 0 0 chr6 165043628 165043663 -24235891 + AT_rich Low_complexity Low_complexity 1 35 0 1912 225 30 38 chr6 165044060 165044562 -24234992 - MLT1D LTR MaLR -7 498 1 370 300 58 0 chr6 165045549 165045669 -24233885 - L2 LINE L2 -5 3308 3182 2111 117 0 0 chr6 165045924 165046236 -24233318 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 165046555 165046577 -24232977 + AT_rich Low_complexity Low_complexity 1 22 0 696 318 76 51 chr6 165047389 165048426 -24231128 - L2 LINE L2 0 3313 2248 526 319 26 56 chr6 165048431 165048701 -24230853 - MLT1J LTR MaLR 0 511 250 327 247 26 0 chr6 165048849 165048926 -24230628 - MLT1L LTR MaLR -536 79 1 435 337 75 19 chr6 165048936 165049203 -24230351 - L2 LINE L2 -1091 2223 1942 7976 29 6 0 chr6 165049449 165050530 -24229024 - L1PA4 LINE L1 0 6155 5070 9644 40 20 23 chr6 165050530 165051751 -24227803 + L1PA4 LINE L1 3862 5078 -1068 1983 120 3 44 chr6 165051962 165052279 -24227275 + AluSx SINE Alu 1 304 -8 381 323 45 15 chr6 165052535 165052668 -24226886 - L2 LINE L2 -2 3270 3134 373 281 16 39 chr6 165052983 165053111 -24226443 - MIR SINE MIR -64 144 20 488 204 102 66 chr6 165053170 165053307 -24226247 - MER20 DNA MER1_type -72 147 6 913 238 10 10 chr6 165053593 165053799 -24225755 - MER3 DNA MER1_type -3 206 1 240 122 0 0 chr6 165053822 165053863 -24225691 + (TG)n Simple_repeat Simple_repeat 1 41 0 306 0 0 0 chr6 165054078 165054112 -24225442 + (TG)n Simple_repeat Simple_repeat 1 34 0 2869 27 0 0 chr6 165054279 165054608 -24224946 - L1P2 LINE L1 -505 5650 5322 1427 36 0 0 chr6 165054606 165054772 -24224782 + L1HS LINE L1 5664 5829 -326 * 43213 37 24 1 chr6 165054773 165060780 -24218774 + L1PA3 LINE L1 5 6155 0 2130 143 0 0 chr6 165110837 165111145 -24168409 + AluSx SINE Alu 4 311 -1 199 294 15 29 chr6 165111409 165111477 -24168077 + L2 LINE L2 3193 3259 -13 589 265 122 42 chr6 165111549 165111787 -24167767 + MIR SINE MIR 6 262 0 288 341 72 48 chr6 165111791 165111958 -24167596 - MIR3 SINE MIR -22 186 16 2186 108 3 7 chr6 165112043 165112339 -24167215 + AluSx SINE Alu 1 295 -17 2229 99 0 0 chr6 165113244 165113527 -24166027 + AluSg SINE Alu 1 283 -27 201 59 29 0 chr6 165113527 165113561 -24165993 + (TAAAA)n Simple_repeat Simple_repeat 2 130 0 21 57 0 0 chr6 165113683 165113718 -24165836 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 165113754 165113775 -24165779 + AT_rich Low_complexity Low_complexity 1 21 0 207 292 0 0 chr6 165113876 165113924 -24165630 + (TATG)n Simple_repeat Simple_repeat 3 50 0 450 227 120 84 chr6 165114387 165114502 -24165052 - MIR SINE MIR -2 260 151 2061 128 24 0 chr6 165114502 165114799 -24164755 + AluSx SINE Alu 1 304 -8 450 227 120 84 chr6 165114799 165114908 -24164646 - MIR SINE MIR -111 151 28 1501 208 31 7 chr6 165115399 165115688 -24163866 + AluJo SINE Alu 1 296 -16 2141 161 35 0 chr6 165116006 165116372 -24163182 + L1MC2 LINE L1 5453 5831 -513 1770 188 10 7 chr6 165116372 165116681 -24162873 + AluJo SINE Alu 1 310 -2 1309 115 55 18 chr6 165116688 165116906 -24162648 + AluJb SINE Alu 85 310 -2 2283 97 3 10 chr6 165116907 165117218 -24162336 + AluSc SINE Alu 1 309 0 209 268 0 0 chr6 165117220 165117261 -24162293 + polypurine Low_complexity Low_complexity 5 45 0 2529 163 69 7 chr6 165117265 165117730 -24161824 + L1MC2 LINE L1 5840 6333 -11 1084 243 110 59 chr6 165117740 165117807 -24161747 + L1MC4 LINE L1 7039 7101 -941 2288 99 0 0 chr6 165117807 165118100 -24161454 + AluSg SINE Alu 4 296 -14 1084 243 110 59 chr6 165118100 165118505 -24161049 + L1MC4 LINE L1 7101 7535 -507 2280 99 3 3 chr6 165118507 165118811 -24160743 + AluSx SINE Alu 1 304 -8 1178 109 30 6 chr6 165118811 165118976 -24160578 + AluSq SINE Alu 134 302 -11 899 211 57 126 chr6 165118985 165119094 -24160460 + L1MC4 LINE L1 7636 7751 -291 2381 87 0 0 chr6 165119094 165119393 -24160161 - AluSg SINE Alu -11 299 1 899 211 57 126 chr6 165119393 165119720 -24159834 + L1MC4 LINE L1 7751 8042 0 483 262 49 70 chr6 165119739 165119983 -24159571 - HAL1b LINE L1 -891 457 219 1143 189 0 18 chr6 165120041 165120263 -24159291 + AluJo SINE Alu 87 304 -8 532 154 13 0 chr6 165121111 165121189 -24158365 + AluJ/FRAM SINE Alu 214 292 -20 1953 146 7 0 chr6 165121300 165121595 -24157959 + AluSx SINE Alu 1 297 -15 2346 100 0 0 chr6 165122500 165122799 -24156755 + AluY SINE Alu 1 299 -12 12700 114 18 116 chr6 165123336 165124269 -24155285 + Tigger1 DNA MER2_type 24 1047 -1371 2347 96 0 7 chr6 165124269 165124570 -24154984 + AluSg SINE Alu 1 299 -11 12700 114 18 116 chr6 165124570 165124851 -24154703 + Tigger1 DNA MER2_type 1047 1354 -1064 2596 40 3 0 chr6 165124851 165125147 -24154407 + AluY SINE Alu 1 297 -14 12700 114 18 116 chr6 165125147 165125402 -24154152 + Tigger1 DNA MER2_type 1354 1632 -786 1877 136 13 33 chr6 165125402 165125703 -24153851 + AluSx SINE Alu 1 295 -17 12700 114 18 116 chr6 165125703 165125805 -24153749 + Tigger1 DNA MER2_type 1632 1742 -676 573 126 243 19 chr6 165125805 165125908 -24153646 + FLAM_A SINE Alu 11 136 -6 12700 114 18 116 chr6 165125908 165126267 -24153287 + Tigger1 DNA MER2_type 1742 2135 -283 2150 121 7 0 chr6 165126267 165126572 -24152982 - AluSx SINE Alu -5 307 1 12700 114 18 116 chr6 165126572 165126810 -24152744 + Tigger1 DNA MER2_type 2135 2045 -373 1516 186 21 14 chr6 165126810 165127100 -24152454 - AluJb SINE Alu -15 297 6 12700 114 18 116 chr6 165127100 165127272 -24152282 + Tigger1 DNA MER2_type 2044 2231 -187 2148 105 3 0 chr6 165127273 165127589 -24151965 + AluSx SINE Alu 1 317 0 2080 116 0 3 chr6 165127760 165128052 -24151502 + AluSg SINE Alu 1 291 -19 405 225 93 20 chr6 165128061 165128212 -24151342 + L1ME4a LINE L1 5959 6120 -1 366 23 0 0 chr6 165128740 165128783 -24150771 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2084 106 7 14 chr6 165129155 165129468 -24150086 + AluSx SINE Alu 1 311 0 306 360 144 0 chr6 165129790 165129915 -24149639 - L2 LINE L2 -6 3266 3124 295 116 0 0 chr6 165130451 165130494 -24149060 + L1MC5 LINE L1 7190 7232 -729 752 217 108 50 chr6 165130545 165130988 -24148566 + L1MC5 LINE L1 7226 7675 -286 200 333 0 0 chr6 165130997 165131081 -24148473 + T-rich Low_complexity Low_complexity 1 84 0 418 229 186 33 chr6 165131130 165131340 -24148214 + L1MC5 LINE L1 7690 7931 -30 600 179 140 28 chr6 165131620 165131799 -24147755 + MLT1K LTR MaLR 390 588 0 382 315 44 98 chr6 165131821 165132272 -24147282 - L2 LINE L2 -6 3266 2840 1868 96 19 81 chr6 165133914 165134237 -24145317 - AluJb SINE Alu -9 303 1 1175 254 123 23 chr6 165134325 165134360 -24145194 + L2 LINE L2 2742 2772 -541 2453 53 0 3 chr6 165134360 165134663 -24144891 - AluY SINE Alu -8 303 2 1175 254 123 23 chr6 165134663 165135143 -24144411 + L2 LINE L2 2772 3313 0 1164 92 0 0 chr6 165135161 165135314 -24144240 - AluSg/x SINE Alu -13 297 145 2196 91 0 44 chr6 165135338 165135656 -24143898 + AluSx SINE Alu 1 304 -8 2462 163 5 0 chr6 165135656 165136043 -24143511 - HUERS-P3 LTR ERV1 -1734 7185 6797 * 11442 127 14 11 chr6 165136036 165137535 -24142019 - HUERS-P3 LTR ERV1 -2294 6625 5120 2433 80 7 0 chr6 165137535 165137834 -24141720 + AluSq SINE Alu 1 301 -12 11442 127 14 11 chr6 165137834 165138002 -24141552 - HUERS-P3 LTR ERV1 -3799 5120 4954 361 146 0 0 chr6 165138085 165138140 -24141414 - L1PBa LINE L1 -5974 889 835 2729 121 3 0 chr6 165138160 165138540 -24141014 - HUERS-P3 LTR ERV1 -3977 4942 4562 2748 56 74 8 chr6 165138541 165138932 -24140622 - L1PBa LINE L1 -4218 2645 2229 * 3861 274 133 5 chr6 165138931 165140108 -24139446 - L1M2 LINE L1 -5521 1328 1 25 0 0 0 chr6 165140473 165140498 -24139056 + AT_rich Low_complexity Low_complexity 1 25 0 2110 131 0 0 chr6 165140656 165140938 -24138616 + AluSx SINE Alu 12 293 -19 450 146 29 87 chr6 165141127 165141230 -24138324 - AluJb SINE Alu -6 306 210 1259 140 0 0 chr6 165141245 165141451 -24138103 + AluSg/x SINE Alu 108 313 0 6378 155 20 14 chr6 165141481 165142181 -24137373 + L1PB1 LINE L1 4004 4698 -1453 1940 129 24 3 chr6 165142181 165142476 -24137078 - AluSp SINE Alu -12 301 1 6378 155 20 14 chr6 165142476 165143530 -24136024 + L1PB1 LINE L1 4698 5774 -377 2180 111 0 49 chr6 165143530 165143666 -24135888 + AluSx SINE Alu 1 142 -170 2422 72 0 0 chr6 165143666 165143956 -24135598 + AluY SINE Alu 1 290 -21 2180 111 0 49 chr6 165143956 165144144 -24135410 + AluSx SINE Alu 142 309 -3 6378 155 20 14 chr6 165144144 165144524 -24135030 + L1PB1 LINE L1 5774 6150 -1 24 0 0 0 chr6 165144524 165144548 -24135006 + AT_rich Low_complexity Low_complexity 1 24 0 11085 178 23 16 chr6 165144568 165145149 -24134405 + L1MA4A LINE L1 3027 3603 -2543 2237 92 48 0 chr6 165145149 165145442 -24134112 - AluSg SINE Alu -3 307 1 11085 178 23 16 chr6 165145442 165147150 -24132404 + L1MA4A LINE L1 3603 5331 -815 797 135 0 0 chr6 165147153 165147257 -24132297 + FLAM_C SINE Alu 2 105 -38 4609 147 23 5 chr6 165147308 165148216 -24131338 + L1MA4A LINE L1 5319 6303 0 244 158 0 0 chr6 165148216 165148254 -24131300 - MER74A LTR ERVL -399 159 122 838 198 0 60 chr6 165148266 165148448 -24131106 - MER74A LTR ERVL -387 171 1 2386 80 0 10 chr6 165148676 165148975 -24130579 + AluSg SINE Alu 1 296 -14 2468 64 0 0 chr6 165149152 165149450 -24130104 - AluY SINE Alu -13 298 1 495 0 0 0 chr6 165149688 165149743 -24129811 + (TA)n Simple_repeat Simple_repeat 1 55 0 1978 95 11 0 chr6 165149743 165150007 -24129547 - AluSp SINE Alu -13 300 34 406 323 74 11 chr6 165150117 165150306 -24129248 + MIR SINE MIR 41 241 -21 2317 105 3 3 chr6 165150440 165150746 -24128808 + AluSq SINE Alu 1 306 -7 1687 157 11 21 chr6 165150746 165151032 -24128522 + AluJo SINE Alu 12 294 -18 2366 93 0 0 chr6 165152159 165152459 -24127095 - AluSx SINE Alu -12 300 1 21 0 0 0 chr6 165152469 165152490 -24127064 + AT_rich Low_complexity Low_complexity 1 21 0 309 248 44 33 chr6 165152490 165152580 -24126974 - FRAM/FAM SINE Alu -94 72 4 180 97 0 0 chr6 165152748 165152779 -24126775 + (CGGGGG)n Simple_repeat Simple_repeat 3 33 0 413 277 82 13 chr6 165153203 165153362 -24126192 + MER5B DNA MER1_type 7 176 -2 308 289 79 108 chr6 165153644 165153986 -24125568 + L1M2 LINE L1 759 1090 -5759 265 224 26 0 chr6 165154566 165154642 -24124912 + MER5A DNA MER1_type 108 185 -4 1420 109 52 0 chr6 165154874 165155085 -24124469 + AluSg/x SINE Alu 91 312 0 597 183 15 69 chr6 165155553 165155684 -24123870 + FLAM_C SINE Alu 2 125 -18 1002 169 50 15 chr6 165155847 165156048 -24123506 + MER3 DNA MER1_type 2 209 0 1249 96 0 28 chr6 165156260 165156438 -24123116 - AluSc SINE Alu -19 290 118 2271 101 0 25 chr6 165156444 165156761 -24122793 - AluSx SINE Alu -3 309 1 2244 97 3 7 chr6 165156763 165157063 -24122491 - AluSx SINE Alu -13 299 1 558 0 0 0 chr6 165157562 165157624 -24121930 + (TA)n Simple_repeat Simple_repeat 1 62 0 2371 81 7 3 chr6 165158459 165158756 -24120798 + AluSg SINE Alu 1 298 -12 322 255 45 28 chr6 165158757 165158900 -24120654 + L1ME LINE L1 5699 5836 -334 2159 92 4 0 chr6 165159226 165159499 -24120055 + AluSg SINE Alu 1 274 -36 234 0 0 0 chr6 165159504 165159530 -24120024 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr6 165160076 165160099 -24119455 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1865 152 7 14 chr6 165160101 165160391 -24119163 - AluSx SINE Alu -24 288 1 1986 114 62 0 chr6 165160466 165160755 -24118799 + AluSx SINE Alu 1 307 -5 653 128 0 0 chr6 165160773 165160859 -24118695 + FRAM SINE Alu 66 151 -25 1074 151 251 25 chr6 165161024 165161263 -24118291 + AluSg SINE Alu 1 293 -7 2507 56 0 7 chr6 165161473 165161777 -24117777 - AluSq SINE Alu -11 302 1 529 271 100 104 chr6 165161787 165162033 -24117521 - L1M1 LINE L1 -4091 3655 3409 1551 181 75 10 chr6 165162033 165162326 -24117228 + AluJb SINE Alu 1 312 0 529 271 100 104 chr6 165162326 165162921 -24116633 - L1M1 LINE L1 -4337 3409 2729 1504 238 124 37 chr6 165163434 165163892 -24115662 - MLT1E LTR MaLR 0 593 96 771 174 15 23 chr6 165163895 165164027 -24115527 + FLAM_A SINE Alu 1 131 -2 269 262 58 19 chr6 165164074 165164177 -24115377 - MLT1E LTR MaLR -435 107 1 1581 146 62 43 chr6 165164241 165164599 -24114955 - MSTA LTR MaLR 0 428 1 2155 123 0 10 chr6 165165666 165165976 -24113578 + AluSx SINE Alu 1 307 -5 2345 80 3 17 chr6 165166834 165167136 -24112418 + AluSp SINE Alu 1 298 -15 21 36 0 0 chr6 165167222 165167250 -24112304 + AT_rich Low_complexity Low_complexity 1 28 0 520 177 4 244 chr6 165168504 165168590 -24110964 + MIR SINE MIR 14 2 -260 2236 116 14 0 chr6 165168590 165168884 -24110670 - AluSx SINE Alu -14 298 1 520 177 4 244 chr6 165168884 165169051 -24110503 + MIR SINE MIR 1 206 -56 534 174 91 0 chr6 165169666 165169787 -24109767 - L1ME1 LINE L1 -5 6161 6030 246 86 0 0 chr6 165170424 165170459 -24109095 + L1MC/D LINE L1 5690 5724 -2084 2123 114 3 25 chr6 165170472 165170610 -24108944 + AluSc SINE Alu 1 141 -168 2302 108 0 0 chr6 165170610 165170906 -24108648 + AluSg SINE Alu 3 298 -12 2123 114 3 25 chr6 165170906 165171082 -24108472 + AluSc SINE Alu 141 308 -1 22 35 0 0 chr6 165171331 165171360 -24108194 + AT_rich Low_complexity Low_complexity 1 29 0 2089 108 0 24 chr6 165171389 165171708 -24107846 - AluSx SINE Alu 0 312 1 863 182 119 16 chr6 165172044 165172268 -24107286 - MER46A DNA MER2_type -2502 229 78 778 161 0 8 chr6 165172268 165172386 -24107168 - FLAM_C SINE Alu -16 117 1 863 182 119 16 chr6 165172386 165172473 -24107081 - MER46A DNA MER2_type -2653 78 1 385 165 0 71 chr6 165172904 165172989 -24106565 - MER119 DNA MER1_type 0 583 505 2317 83 0 0 chr6 165173001 165173316 -24106238 - AluY SINE Alu 0 311 2 1219 218 119 29 chr6 165173317 165173481 -24106073 - MER119 DNA MER1_type -204 379 231 2454 135 34 59 chr6 165173481 165173924 -24105630 - MSTB1 LTR MaLR 0 432 1 1219 218 119 29 chr6 165173924 165174103 -24105451 - MER119 DNA MER1_type -352 231 5 1466 155 30 116 chr6 165174170 165174505 -24105049 - AluJb SINE Alu -6 306 1 3566 173 84 36 chr6 165174670 165175422 -24104132 - MER21B LTR ERV1 -75 788 1 536 255 87 1 chr6 165175424 165175610 -24103944 - L1ME LINE L1 -320 5801 5597 1726 132 15 68 chr6 165176041 165176221 -24103333 - AluJo SINE Alu -4 308 120 243 0 0 0 chr6 165176221 165176248 -24103306 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2053 110 4 4 chr6 165176248 165176529 -24103025 - AluSx SINE Alu -31 281 1 1726 132 15 68 chr6 165176529 165176672 -24102882 - AluJo SINE Alu -190 122 1 2247 92 0 0 chr6 165176688 165176998 -24102556 - AluSx SINE Alu 0 310 1 320 261 57 79 chr6 165177095 165177226 -24102328 - L1ME LINE L1 -1260 4886 4754 1778 142 17 30 chr6 165177226 165177528 -24102026 - AluJb SINE Alu -14 298 1 320 261 57 79 chr6 165177528 165177714 -24101840 - L1ME LINE L1 -1392 4754 4576 2227 76 14 14 chr6 165178438 165178729 -24100825 + AluSc SINE Alu 1 291 -18 2462 63 0 0 chr6 165179454 165179741 -24099813 - AluY SINE Alu -24 287 1 2406 58 0 32 chr6 165179786 165180094 -24099460 + AluY SINE Alu 1 298 -13 2243 119 10 0 chr6 165180158 165180460 -24099094 - AluSq SINE Alu -8 305 1 24 0 0 0 chr6 165181177 165181201 -24098353 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr6 165182008 165182028 -24097526 + (A)n Simple_repeat Simple_repeat 1 20 0 2381 94 0 0 chr6 165183678 165183976 -24095578 + AluSx SINE Alu 1 298 -14 1757 126 58 11 chr6 165184000 165184278 -24095276 - AluJo SINE Alu -13 299 9 726 162 0 0 chr6 165184322 165184433 -24095121 + FRAM SINE Alu 55 165 -11 1815 156 13 16 chr6 165185868 165186175 -24093379 + AluJo SINE Alu 1 306 -6 1869 170 10 7 chr6 165186282 165186582 -24092972 - AluJo SINE Alu -6 306 6 1819 92 0 0 chr6 165187014 165187243 -24092311 - AluSx SINE Alu -83 229 1 472 319 68 26 chr6 165187243 165187429 -24092125 + MLT1K LTR MaLR 89 282 -306 741 196 182 0 chr6 165187488 165187636 -24091918 + FAM SINE Alu 1 175 0 664 215 23 15 chr6 165187646 165187776 -24091778 + AluJo/FLAM SINE Alu 2 132 -170 1917 163 7 0 chr6 165187776 165188064 -24091490 + AluSx SINE Alu 1 290 -22 1419 249 7 20 chr6 165188079 165188376 -24091178 + AluJb SINE Alu 1 293 -9 2043 112 14 10 chr6 165189510 165189806 -24089748 + AluSc SINE Alu 1 297 -12 2554 57 3 0 chr6 165190147 165190446 -24089108 - AluSp SINE Alu -13 300 1 1790 169 27 7 chr6 165191615 165191910 -24087644 + AluJo SINE Alu 1 301 -11 2294 89 3 0 chr6 165192318 165192610 -24086944 + AluY SINE Alu 1 293 -18 1380 220 71 73 chr6 165193003 165193183 -24086371 + MER119 DNA MER1_type 1 180 -403 1942 127 33 0 chr6 165193183 165193485 -24086069 - AluSx SINE Alu 0 311 1 1380 220 71 73 chr6 165193485 165193790 -24085764 + MER119 DNA MER1_type 180 583 0 2350 106 0 3 chr6 165194042 165194345 -24085209 - AluSq SINE Alu -11 302 1 1941 138 21 7 chr6 165194759 165195050 -24084504 + AluSx SINE Alu 1 295 -17 2327 97 0 0 chr6 165195210 165195510 -24084044 + AluSx SINE Alu 2 301 -11 2215 220 115 26 chr6 165195574 165196615 -24082939 + L1MDa LINE L1 1 1269 -5271 734 204 104 0 chr6 165196606 165196807 -24082747 + L1MDa LINE L1 1649 1870 -4670 * 1693 150 13 64 chr6 165196831 165196948 -24082606 + AluJo SINE Alu 1 122 -190 2266 109 0 0 chr6 165196948 165197242 -24082312 + AluSg SINE Alu 1 294 -16 2473 76 7 0 chr6 165197244 165197546 -24082008 + AluSp SINE Alu 1 304 -9 1693 150 13 64 chr6 165197546 165197739 -24081815 + AluJo SINE Alu 123 298 -14 5162 230 40 54 chr6 165197739 165198189 -24081365 + L1MDa LINE L1 2985 3440 -3100 1697 132 9 117 chr6 165198189 165198523 -24081031 + AluSx SINE Alu 1 298 -14 5162 230 40 54 chr6 165198523 165198604 -24080950 + L1MDa LINE L1 3440 3521 -3019 2314 112 0 3 chr6 165198604 165198918 -24080636 + AluSq SINE Alu 1 313 0 5162 230 40 54 chr6 165198918 165199143 -24080411 + L1MDa LINE L1 3521 3748 -2792 2447 71 0 3 chr6 165199143 165199439 -24080115 + AluY SINE Alu 1 295 -16 5162 230 40 54 chr6 165199439 165199651 -24079903 + L1MDa LINE L1 3748 3961 -2579 2206 102 0 20 chr6 165199651 165199956 -24079598 + AluSx SINE Alu 1 299 -13 5162 230 40 54 chr6 165199956 165200401 -24079153 + L1MDa LINE L1 3961 4374 -2166 2024 51 0 0 chr6 165200401 165200635 -24078919 + AluY SINE Alu 78 311 0 5162 230 40 54 chr6 165200635 165200980 -24078574 + L1MDa LINE L1 4374 4722 -1818 1083 178 5 47 chr6 165200965 165201178 -24078376 + L1MB3 LINE L1 1 204 -6180 * 1366 212 42 45 chr6 165201184 165201538 -24078016 + MLT1A1 LTR MaLR 1 353 -12 1546 190 41 38 chr6 165201556 165201898 -24077656 + L1MB3 LINE L1 234 576 -5808 1213 240 4 8 chr6 165201928 165202182 -24077372 + AluJo SINE Alu 13 265 -47 928 131 44 98 chr6 165202182 165202279 -24077275 + L1MB3 LINE L1 2185 2286 -4098 2242 116 10 0 chr6 165202279 165202581 -24076973 + AluSx SINE Alu 1 305 -7 928 131 44 98 chr6 165202581 165202619 -24076935 + L1MB3 LINE L1 2286 2325 -4059 2029 126 7 7 chr6 165202619 165202928 -24076626 - AluSx SINE Alu -2 310 2 928 131 44 98 chr6 165202928 165203065 -24076489 + L1MB3 LINE L1 2325 2443 -3941 825 185 0 85 chr6 165203072 165203261 -24076293 + FAM SINE Alu 1 49 0 540 176 25 0 chr6 165203261 165203387 -24076167 + L1MB3 LINE L1 2445 2572 -3810 1634 172 45 0 chr6 165203387 165203678 -24075876 + L1MB3 LINE L1 5879 6182 -1 3877 166 35 33 chr6 165203694 165203903 -24075651 + L1MB3 LINE L1 5621 5828 -591 2137 106 20 7 chr6 165203903 165204196 -24075358 + AluSx SINE Alu 1 297 -15 3877 166 35 33 chr6 165204196 165204782 -24074772 + L1MB3 LINE L1 5828 6418 -1 420 232 43 6 chr6 165204794 165204945 -24074609 + L1M4 LINE L1 4316 4460 -1686 2370 84 0 40 chr6 165204945 165205079 -24074475 + AluSc SINE Alu 1 139 -170 2158 99 0 7 chr6 165205079 165205362 -24074192 + AluSx SINE Alu 2 282 -30 417 66 0 0 chr6 165205365 165205426 -24074128 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 2370 84 0 40 chr6 165205426 165205609 -24073945 + AluSc SINE Alu 141 309 0 420 232 43 6 chr6 165205609 165205621 -24073933 + L1M4 LINE L1 4460 4485 -1661 2311 106 3 3 chr6 165205621 165205933 -24073621 + AluSx SINE Alu 1 312 0 5035 152 27 51 chr6 165205936 165206757 -24072797 + L1MA5 LINE L1 4656 5496 -804 1986 136 10 3 chr6 165206757 165207059 -24072495 + AluSx SINE Alu 2 305 -7 5035 152 27 51 chr6 165207059 165207386 -24072168 + L1MA5 LINE L1 5496 5830 -470 222 37 0 0 chr6 165207386 165207413 -24072141 + (CATA)n Simple_repeat Simple_repeat 2 28 0 5035 152 27 51 chr6 165207413 165207727 -24071827 + L1MA5 LINE L1 5830 6082 -218 2095 92 27 17 chr6 165207727 165208019 -24071535 - AluSx SINE Alu -17 295 1 5035 152 27 51 chr6 165208019 165208231 -24071323 + L1MA5 LINE L1 6082 6298 -2 3181 201 44 62 chr6 165208279 165208546 -24071008 + L1MC4 LINE L1 7131 7401 -641 2465 59 0 3 chr6 165208546 165208849 -24070705 - AluY SINE Alu -9 302 1 3181 201 44 62 chr6 165208849 165208922 -24070632 + L1MC4 LINE L1 7401 7474 -568 2257 108 0 0 chr6 165208922 165209218 -24070336 - AluSx SINE Alu -16 296 1 3181 201 44 62 chr6 165209218 165209549 -24070005 + L1MC4 LINE L1 7474 7784 -258 1620 53 63 0 chr6 165209549 165209756 -24069798 - AluY SINE Alu -3 308 89 3181 201 44 62 chr6 165209756 165210011 -24069543 + L1MC4 LINE L1 7784 8042 0 1860 140 9 58 chr6 165210134 165210462 -24069092 + AluSx SINE Alu 1 312 0 2184 128 0 3 chr6 165210880 165211186 -24068368 + AluSx SINE Alu 1 305 -7 1370 151 34 50 chr6 165211451 165211690 -24067864 - MER46A DNA MER2_type 0 236 2 21 0 0 0 chr6 165211707 165211728 -24067826 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr6 165211832 165211860 -24067694 + AT_rich Low_complexity Low_complexity 1 28 0 1398 155 9 0 chr6 165211879 165212098 -24067456 - AluJb SINE Alu -84 228 8 350 107 107 0 chr6 165212778 165212834 -24066720 + Alu SINE Alu 1 62 -246 180 111 0 0 chr6 165413023 165413050 -23866504 + (A)n Simple_repeat Simple_repeat 1 27 0 2606 67 3 0 chr6 165413326 165413638 -23865916 + AluSp SINE Alu 1 313 0 1607 160 14 38 chr6 165413657 165413945 -23865609 + AluJb SINE Alu 13 293 -19 1258 224 178 13 chr6 165413956 165414354 -23865200 + MLT1D LTR MaLR 40 503 -2 2394 89 0 3 chr6 165414436 165414738 -23864816 - AluSg SINE Alu -9 301 1 459 202 0 0 chr6 165414787 165414871 -23864683 + AluJ/FLAM SINE Alu 5 88 -224 513 264 6 18 chr6 165415126 165415293 -23864261 + L1MC5 LINE L1 7720 7884 -77 556 182 0 0 chr6 165415293 165415392 -23864162 - FLAM_C SINE Alu -1 142 44 1707 94 0 0 chr6 165415636 165415859 -23863695 + AluSg/x SINE Alu 78 300 -10 444 257 145 33 chr6 165416002 165416264 -23863290 + MLT1J2 LTR MaLR 114 422 -19 1249 161 5 18 chr6 165416271 165416489 -23863065 - MER89 LTR ERV1 0 559 345 3892 145 30 122 chr6 165416491 165417093 -23862461 + MER4D LTR ERV1 1 492 -380 2348 105 0 0 chr6 165417093 165417398 -23862156 - AluSg SINE Alu -5 305 1 3892 145 30 122 chr6 165417398 165417714 -23861840 + MER4D LTR ERV1 492 835 -37 817 189 35 0 chr6 165417745 165417888 -23861666 - MER89 LTR ERV1 -212 347 200 546 161 0 0 chr6 165417866 165417953 -23861601 - MER89 LTR ERV1 -472 87 1 * 256 154 0 0 chr6 165417972 165418011 -23861543 + MLT1J2-int LTR MaLR 6 44 -1327 2288 99 0 3 chr6 165418687 165418979 -23860575 + AluSg SINE Alu 1 291 -19 235 239 28 0 chr6 165419340 165419411 -23860143 + GA-rich Low_complexity Low_complexity 1 73 0 2268 65 14 4 chr6 165419617 165419921 -23859633 - AluSp SINE Alu 0 307 1 900 103 0 29 chr6 165419939 165420075 -23859479 - FLAM_C SINE Alu -1 132 1 1710 184 0 3 chr6 165420136 165420444 -23859110 + AluJo SINE Alu 1 307 0 2292 97 0 3 chr6 165420719 165421018 -23858536 - AluSx SINE Alu -12 300 3 2295 112 0 6 chr6 165421073 165421386 -23858168 - AluSq SINE Alu -2 311 1 1885 136 39 23 chr6 165421388 165421696 -23857858 - AluSq SINE Alu 0 313 1 597 147 0 49 chr6 165421703 165421805 -23857749 - FLAM_C SINE Alu -19 124 28 537 249 46 20 chr6 165421994 165422191 -23857363 + HsTC2 DNA Tc2 670 871 -1027 322 210 41 38 chr6 165422419 165422466 -23857088 - L1MC/D LINE L1 -334 5787 5782 2102 90 22 0 chr6 165422466 165422791 -23856763 - AluSx SINE Alu 0 331 1 322 210 41 38 chr6 165422791 165422874 -23856680 - L1MC/D LINE L1 -339 5782 5701 654 215 33 23 chr6 165423020 165423207 -23856347 - L1MC/D LINE L1 -437 5684 5526 180 300 44 22 chr6 165423347 165423437 -23856117 + L2 LINE L2 2685 2776 -538 * 202 184 26 0 chr6 165423421 165423459 -23856095 + MIR SINE MIR 15 53 -209 664 205 16 0 chr6 165423635 165423757 -23855797 + FLAM_A SINE Alu 1 124 -9 2511 46 0 7 chr6 165426387 165426693 -23852861 + AluY SINE Alu 1 304 -7 922 157 45 300 chr6 165427506 165427688 -23851866 - L1MC3 LINE L1 -624 7161 6934 2232 112 7 7 chr6 165427688 165427993 -23851561 + AluSx SINE Alu 1 305 -7 922 157 45 300 chr6 165427993 165428115 -23851439 - L1MC3 LINE L1 -851 6934 6783 342 0 0 0 chr6 165428115 165428153 -23851401 + (TG)n Simple_repeat Simple_repeat 2 39 0 922 157 45 300 chr6 165428153 165428177 -23851377 - L1MC3 LINE L1 -1002 6783 6755 1716 148 36 52 chr6 165428177 165428482 -23851072 + AluJb SINE Alu 11 310 -2 922 157 45 300 chr6 165428482 165428660 -23850894 - L1MC3 LINE L1 -1030 6755 6859 1745 151 26 23 chr6 165428660 165428826 -23850728 - AluJo SINE Alu -4 308 139 2267 82 10 3 chr6 165428826 165429119 -23850435 - AluSp SINE Alu -17 296 2 1745 151 26 23 chr6 165429119 165429257 -23850297 - AluJo SINE Alu -173 139 3 922 157 45 300 chr6 165429257 165429414 -23850140 - L1MC3 LINE L1 -925 6860 6665 208 139 0 0 chr6 165429498 165429534 -23850020 + (TTTAA)n Simple_repeat Simple_repeat 3 38 0 1820 129 3 39 chr6 165429535 165429821 -23849733 - AluSx SINE Alu -36 276 1 2139 94 35 0 chr6 165429824 165430110 -23849444 - AluSx SINE Alu -16 296 1 1794 178 0 3 chr6 165430503 165430789 -23848765 + AluJo SINE Alu 1 285 -27 2183 92 27 10 chr6 165431146 165431438 -23848116 + AluSx SINE Alu 1 297 -15 295 385 74 28 chr6 165431494 165431777 -23847777 - L2 LINE L2 -10 3262 2967 362 291 77 87 chr6 165432088 165432162 -23847392 + L3 LINE CR1 1381 1454 -123 2135 106 3 17 chr6 165432162 165432455 -23847099 - AluSq SINE Alu -24 289 1 362 291 77 87 chr6 165432455 165432576 -23846978 + L3 LINE CR1 1454 1574 -3 880 49 32 32 chr6 165432753 165432876 -23846678 + AluSq/x SINE Alu 12 134 -179 2168 106 18 0 chr6 165432877 165433161 -23846393 + AluSq SINE Alu 1 289 -24 2349 86 27 0 chr6 165433691 165433983 -23845571 + AluSc SINE Alu 1 300 -9 21 82 0 0 chr6 165435211 165435260 -23844294 + AT_rich Low_complexity Low_complexity 1 49 0 328 153 51 0 chr6 165435470 165435529 -23844025 - L2 LINE L2 -1 3271 3210 544 256 173 7 chr6 165436217 165436535 -23843019 + L2 LINE L2 2776 3138 -175 2367 92 0 3 chr6 165436553 165436857 -23842697 - AluSx SINE Alu -9 303 1 399 274 115 57 chr6 165436864 165437021 -23842533 + LTR33A LTR ERVL 39 160 -363 257 255 224 0 chr6 165437199 165437297 -23842257 + LTR33A LTR ERVL 404 523 0 392 312 36 7 chr6 165437297 165437435 -23842119 + L2 LINE L2 3172 3313 0 2340 101 3 0 chr6 165437577 165437874 -23841680 - AluSp SINE Alu -15 298 1 1551 204 0 25 chr6 165438213 165438527 -23841027 + AluJo SINE Alu 1 306 -6 1978 147 0 10 chr6 165438550 165438843 -23840711 + AluSx SINE Alu 1 290 -22 2322 99 0 10 chr6 165438843 165439145 -23840409 + AluSx SINE Alu 1 299 -13 1969 108 30 0 chr6 165439505 165439774 -23839780 + AluSx SINE Alu 33 309 -3 2316 110 0 3 chr6 165439829 165440128 -23839426 + AluSq SINE Alu 1 298 -15 2196 107 7 3 chr6 165440131 165440429 -23839125 + AluSq SINE Alu 3 301 -12 633 174 0 30 chr6 165440473 165440605 -23838949 - FLAM_C SINE Alu -2 141 14 1810 180 0 7 chr6 165441022 165441311 -23838243 - AluJb SINE Alu -25 287 1 2391 83 3 0 chr6 165441387 165441689 -23837865 - AluSp SINE Alu -10 303 1 1326 171 16 112 chr6 165441753 165442074 -23837480 + AluJb SINE Alu 1 290 -22 2296 110 0 0 chr6 165442081 165442381 -23837173 + AluSx SINE Alu 1 300 -12 1019 204 82 59 chr6 165442652 165442922 -23836632 - AluJo SINE Alu -36 276 1 274 174 0 0 chr6 165442975 165443021 -23836533 + L1ME LINE L1 5617 5662 -459 749 126 0 25 chr6 165443067 165443186 -23836368 + FRAM SINE Alu 54 169 -7 1671 126 44 58 chr6 165443270 165443563 -23835991 + AluJb SINE Alu 16 304 -8 2292 97 3 0 chr6 165443563 165443861 -23835693 + AluSp SINE Alu 3 301 -12 1435 192 42 7 chr6 165444261 165444548 -23835006 - AluJb SINE Alu -15 297 1 1216 209 80 28 chr6 165444550 165444574 -23834980 - AluJb SINE Alu -10 302 281 2066 133 24 0 chr6 165444574 165444867 -23834687 + AluSx SINE Alu 1 300 -12 1216 209 80 28 chr6 165444867 165445129 -23834425 - AluJb SINE Alu -31 281 1 867 118 0 24 chr6 165445191 165445318 -23834236 - AluSp/q SINE Alu -18 295 172 1690 120 0 0 chr6 165445331 165445556 -23833998 - AluSx SINE Alu -87 225 1 2098 93 48 0 chr6 165446553 165446843 -23832711 - AluSp SINE Alu -9 304 1 2192 122 3 0 chr6 165446848 165447152 -23832402 - AluSx SINE Alu -7 305 1 2010 145 30 0 chr6 165447569 165447866 -23831688 + AluJb SINE Alu 2 307 -5 2186 117 0 0 chr6 165447914 165448212 -23831342 + AluSc SINE Alu 1 298 -11 231 298 123 0 chr6 165448220 165448334 -23831220 - MER5B DNA MER1_type -47 131 4 2050 144 0 7 chr6 165448741 165449039 -23830515 - AluSx SINE Alu -16 296 1 1995 138 0 3 chr6 165449080 165449369 -23830185 - AluSc SINE Alu -20 289 2 1384 135 5 23 chr6 165449430 165449592 -23829962 - AluSg/x SINE Alu -17 295 136 2233 107 3 0 chr6 165449592 165449891 -23829663 - AluSp SINE Alu -13 300 1 1384 135 5 23 chr6 165449891 165449943 -23829611 - AluSg/x SINE Alu -176 136 85 2039 130 0 0 chr6 165450467 165450786 -23828768 + AluSx SINE Alu 9 327 0 2247 88 17 7 chr6 165450883 165451177 -23828377 + AluSp SINE Alu 1 297 -16 970 135 7 0 chr6 165451557 165451698 -23827856 + AluJo SINE Alu 1 142 -170 564 152 0 38 chr6 165451704 165451809 -23827745 + AluSg/x SINE Alu 205 305 -4 2263 107 7 0 chr6 165451809 165452117 -23827437 + AluSg SINE Alu 1 310 0 2180 124 0 0 chr6 165452123 165452414 -23827140 + AluSg SINE Alu 3 293 -17 956 93 73 26 chr6 165452439 165452619 -23826935 - AluSp SINE Alu 0 313 148 2268 112 0 0 chr6 165452684 165452988 -23826566 + AluY SINE Alu 1 304 -7 284 339 69 16 chr6 165452991 165453180 -23826374 + MIR SINE MIR 57 255 -7 181 364 110 0 chr6 165453180 165453298 -23826256 + MIR SINE MIR 119 249 -13 261 264 104 19 chr6 165453328 165453434 -23826120 + MIR3 SINE MIR 54 168 -40 1902 120 14 34 chr6 165454850 165455141 -23824413 - AluSx SINE Alu -15 297 13 2261 96 10 26 chr6 165455599 165455911 -23823643 + AluSg SINE Alu 1 307 -3 2823 29 0 0 chr6 165456093 165456402 -23823152 + AluY SINE Alu 1 309 -2 294 298 12 0 chr6 165457306 165457390 -23822164 + (CGG)n Simple_repeat Simple_repeat 3 87 0 2248 85 0 3 chr6 165458600 165458894 -23820660 + AluSq SINE Alu 1 293 -20 2342 102 0 0 chr6 165459042 165459345 -23820209 - AluSg SINE Alu -7 303 1 1313 175 47 61 chr6 165459447 165459744 -23819810 - AluJo SINE Alu -19 293 1 2404 88 0 3 chr6 165459768 165460064 -23819490 - AluSq SINE Alu -18 295 1 2326 96 7 0 chr6 165460903 165461196 -23818358 - AluSp SINE Alu -18 295 1 221 0 35 0 chr6 165461200 165461229 -23818325 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 479 178 303 59 chr6 165461415 165461567 -23817987 - MER5A DNA MER1_type 0 189 1 688 186 106 0 chr6 165461684 165461845 -23817709 + MER3 DNA MER1_type 32 209 0 2597 160 18 13 chr6 165462133 165462590 -23816964 + MER44D DNA MER2_type 2 515 -90 285 158 0 53 chr6 165462595 165462652 -23816902 + MER47A DNA MER2_type 1 54 -312 1739 155 0 67 chr6 165462689 165463005 -23816549 + AluJb SINE Alu 1 295 -17 439 247 0 0 chr6 165463025 165463110 -23816444 + MER44D DNA MER2_type 525 609 0 476 264 264 7 chr6 165463258 165463553 -23816001 - L2 LINE L2 -2 3311 2941 407 208 71 90 chr6 165463533 165463788 -23815766 - L2 LINE L2 -787 2527 2278 * 1686 161 3 52 chr6 165463901 165464225 -23815329 - AluJo SINE Alu -4 308 1 40 0 0 0 chr6 165464393 165464433 -23815121 + AT_rich Low_complexity Low_complexity 1 40 0 1977 129 13 6 chr6 165464433 165464744 -23814810 + AluSq SINE Alu 1 313 0 765 212 24 0 chr6 165464744 165464865 -23814689 - MER3 DNA MER1_type -31 131 9 767 305 191 14 chr6 165464969 165465399 -23814155 + L3 LINE CR1 1069 1574 -3 2181 127 0 3 chr6 165465445 165465744 -23813810 - AluSx SINE Alu -14 298 1 2379 104 0 3 chr6 165465761 165466070 -23813484 - AluSg SINE Alu -2 308 1 2326 91 7 0 chr6 165466437 165466735 -23812819 - AluSq SINE Alu -13 300 1 2299 88 0 0 chr6 165467044 165467355 -23812199 - AluSq SINE Alu 0 311 1 701 291 115 50 chr6 165467873 165468132 -23811422 - MLT1J LTR MaLR -18 493 202 2272 104 3 0 chr6 165468132 165468431 -23811123 + AluSc SINE Alu 1 300 -9 701 291 115 50 chr6 165468431 165468535 -23811019 - MLT1J LTR MaLR -309 202 106 252 0 0 0 chr6 165468587 165468615 -23810939 + (TG)n Simple_repeat Simple_repeat 2 29 0 275 189 302 0 chr6 165468634 165468740 -23810814 + HAL1 LINE L1 2176 2313 -194 207 0 0 0 chr6 165468818 165468841 -23810713 + (TG)n Simple_repeat Simple_repeat 2 24 0 688 261 79 8 chr6 165468891 165469132 -23810422 - HAL1 LINE L1 -1 2506 2249 308 181 83 14 chr6 165469311 165469383 -23810171 - HAL1b LINE L1 -515 833 757 781 71 0 58 chr6 165470060 165470373 -23809181 + (TA)n Simple_repeat Simple_repeat 1 294 0 661 71 3 73 chr6 165470393 165470766 -23808788 + (TA)n Simple_repeat Simple_repeat 1 346 0 233 93 0 72 chr6 165470780 165470877 -23808677 + (TA)n Simple_repeat Simple_repeat 2 91 0 407 338 161 37 chr6 165471139 165471544 -23808010 + L3 LINE CR1 963 1417 -160 229 327 0 0 chr6 165471598 165471653 -23807901 + L3 LINE CR1 1519 1573 -4 415 315 119 8 chr6 165471756 165471991 -23807563 + MIR SINE MIR 2 262 0 1366 197 42 28 chr6 165472027 165472316 -23807238 + AluJo SINE Alu 1 293 -19 2256 57 11 4 chr6 165472319 165472631 -23806923 + AluY SINE Alu 1 314 0 2673 35 0 10 chr6 165472638 165472948 -23806606 + AluY SINE Alu 1 307 -4 234 111 0 0 chr6 165473210 165473246 -23806308 + (T)n Simple_repeat Simple_repeat 1 39 -6 2128 125 3 0 chr6 165473246 165473541 -23806013 + AluSq SINE Alu 2 297 -16 234 111 0 0 chr6 165473541 165473549 -23806005 + (T)n Simple_repeat Simple_repeat 38 45 0 316 320 48 24 chr6 165473549 165473755 -23805799 - HAL1b LINE L1 -420 928 718 540 265 6 48 chr6 165473791 165473957 -23805597 - HAL1b LINE L1 -703 645 487 1169 227 60 43 chr6 165473970 165474074 -23805480 - L1ME1 LINE L1 -5 6161 6060 1113 228 42 0 chr6 165474074 165474289 -23805265 + MER58A DNA MER1_type 1 224 0 1169 227 60 43 chr6 165474289 165474489 -23805065 - L1ME1 LINE L1 -106 6060 5848 2230 111 7 0 chr6 165474489 165474786 -23804768 + AluSg SINE Alu 1 299 -11 1169 227 60 43 chr6 165474786 165474828 -23804726 - L1ME1 LINE L1 -318 5848 5808 557 163 23 0 chr6 165474833 165474919 -23804635 - AluJ/FLAM SINE Alu -223 89 2 1920 159 3 7 chr6 165475013 165475314 -23804240 - AluJb SINE Alu -12 300 1 2365 102 0 0 chr6 165475349 165475654 -23803900 - AluSx SINE Alu -7 305 1 1817 176 3 3 chr6 165475656 165475952 -23803602 - AluJo SINE Alu -16 296 1 1181 145 6 0 chr6 165476005 165476177 -23803377 - AluSg/x SINE Alu -5 305 133 2085 132 0 7 chr6 165476178 165476482 -23803072 - AluSx SINE Alu -5 307 6 2339 104 3 0 chr6 165476866 165477174 -23802380 - AluSx SINE Alu -3 309 1 1177 205 67 64 chr6 165477174 165477457 -23802097 - AluJo SINE Alu -18 284 1 404 324 256 23 chr6 165477497 165477988 -23801566 + L2 LINE L2 1978 2353 -961 2171 105 10 0 chr6 165477988 165478283 -23801271 + AluY SINE Alu 1 298 -13 2381 78 14 0 chr6 165478283 165478576 -23800978 + AluY SINE Alu 1 298 -13 404 324 256 23 chr6 165478576 165478701 -23800853 + L2 LINE L2 2352 2739 -575 25 75 0 0 chr6 165479020 165479073 -23800481 + AT_rich Low_complexity Low_complexity 1 53 0 1894 150 3 7 chr6 165479084 165479378 -23800176 - AluSx SINE Alu -19 293 1 22 35 0 0 chr6 165479476 165479505 -23800049 + AT_rich Low_complexity Low_complexity 1 29 0 2547 53 7 0 chr6 165480296 165480599 -23798955 + AluY SINE Alu 1 305 -6 2214 81 0 3 chr6 165480911 165481239 -23798315 - AluY SINE Alu 0 327 1 207 0 0 0 chr6 165481541 165481564 -23797990 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 792 227 7 20 chr6 165481564 165481714 -23797840 - FRAM SINE Alu -18 148 1 2256 113 0 3 chr6 165481790 165482099 -23797455 - AluSg SINE Alu -2 308 1 2182 108 3 23 chr6 165482099 165482266 -23797288 - AluSq SINE Alu -13 300 140 2447 57 3 3 chr6 165482266 165482567 -23796987 - AluY SINE Alu -10 301 1 2182 108 3 23 chr6 165482567 165482705 -23796849 - AluSq SINE Alu -173 140 1 1693 158 14 18 chr6 165482982 165483267 -23796287 + AluJo SINE Alu 1 284 -28 2282 99 3 0 chr6 165483438 165483731 -23795823 + AluSp SINE Alu 1 294 -19 764 263 81 88 chr6 165483736 165483813 -23795741 + L1MC/D LINE L1 5340 5416 -2392 1966 102 0 89 chr6 165483813 165484137 -23795417 - AluSx SINE Alu -17 295 1 779 188 8 8 chr6 165484144 165484272 -23795282 - FLAM_C SINE Alu -5 128 1 764 263 81 88 chr6 165484272 165484627 -23794927 + L1MC/D LINE L1 5422 5779 -2029 2516 137 3 3 chr6 165484627 165484992 -23794562 - MER47A DNA MER2_type 0 366 2 764 263 81 88 chr6 165484992 165485030 -23794524 + L1MC/D LINE L1 5779 5816 -1992 2154 145 0 0 chr6 165485325 165485736 -23793818 - AluSx SINE Alu 0 412 2 2167 135 0 0 chr6 165485786 165486089 -23793465 - AluSx SINE Alu -9 303 1 1573 193 13 16 chr6 165486094 165486399 -23793155 - AluJo SINE Alu -8 304 1 566 241 68 101 chr6 165486641 165487051 -23792503 + LTR15 LTR ERV1 183 493 0 2072 124 3 7 chr6 165487088 165487387 -23792167 + AluSq SINE Alu 1 298 -15 4535 157 27 30 chr6 165487591 165487617 -23791937 - L1MB7 LINE L1 -10 6174 6149 1915 160 3 10 chr6 165487617 165487917 -23791637 + AluJb SINE Alu 1 298 -14 4535 157 27 30 chr6 165487917 165488751 -23790803 - L1MB7 LINE L1 -35 6149 5317 913 130 0 55 chr6 165488752 165488766 -23790788 - FLAM_C SINE Alu -174 138 125 2387 78 0 37 chr6 165488766 165489087 -23790467 - AluSg SINE Alu -1 309 1 913 130 0 55 chr6 165489087 165489218 -23790336 - FLAM_C SINE Alu -187 125 1 240 138 103 17 chr6 165489220 165489278 -23790276 - L1MB7 LINE L1 -817 5329 5267 2086 118 75 29 chr6 165489290 165489638 -23789916 - L1MB2 LINE L1 -2 6169 5806 1679 269 75 74 chr6 165490033 165490437 -23789117 + L1MC4 LINE L1 6738 7140 -902 813 155 8 0 chr6 165490437 165490566 -23788988 + FLAM_C SINE Alu 1 130 -3 1679 269 75 74 chr6 165490566 165490705 -23788849 + L1MC4 LINE L1 7140 7277 -765 2055 128 3 0 chr6 165490705 165490993 -23788561 - AluSg SINE Alu -21 289 1 1679 269 75 74 chr6 165490993 165491257 -23788297 + L1MC4 LINE L1 7277 7550 -492 1386 210 17 37 chr6 165491257 165491557 -23787997 - AluJo SINE Alu -18 294 1 1679 269 75 74 chr6 165491557 165491600 -23787954 + L1MC4 LINE L1 7550 7591 -451 891 227 96 73 chr6 165491920 165492038 -23787516 - L1MC5 LINE L1 -41 8001 7887 1748 152 28 3 chr6 165492038 165492321 -23787233 - AluJo SINE Alu -17 295 6 891 227 96 73 chr6 165492321 165492809 -23786745 - L1MC5 LINE L1 -155 7887 7389 26 0 0 0 chr6 165492918 165492944 -23786610 + AT_rich Low_complexity Low_complexity 1 26 0 5190 23 0 0 chr6 165492969 165493527 -23786027 - SVA Other Other 0 1386 829 1796 29 0 45 chr6 165493685 165493931 -23785623 - SVA Other Other -1149 237 3 2303 72 17 3 chr6 165493968 165494261 -23785293 - AluSx SINE Alu -15 297 1 2861 203 61 85 chr6 165494267 165494422 -23785132 - L1MC4 LINE L1 0 8042 7885 258 32 0 0 chr6 165494422 165494453 -23785101 + (TG)n Simple_repeat Simple_repeat 2 32 0 2861 203 61 85 chr6 165494453 165494519 -23785035 - L1MC4 LINE L1 -157 7885 7819 2286 62 14 27 chr6 165494519 165494811 -23784743 - AluY SINE Alu -23 288 1 2861 203 61 85 chr6 165494811 165495623 -23783931 - L1MC4 LINE L1 -223 7819 7033 2225 104 0 16 chr6 165495665 165495974 -23783580 - AluSg1 SINE Alu -5 304 1 1087 94 7 0 chr6 165496005 165496143 -23783411 + AluSp SINE Alu 1 139 -174 809 285 7 46 chr6 165496784 165497068 -23782486 - MLT1K LTR MaLR -1 587 315 204 125 0 0 chr6 165497105 165497137 -23782417 + (T)n Simple_repeat Simple_repeat 1 32 0 1858 122 11 0 chr6 165497325 165497588 -23781966 + AluSq SINE Alu 1 266 -47 427 262 0 39 chr6 165498183 165498286 -23781268 + L2 LINE L2 3190 3288 -25 238 338 42 84 chr6 165498476 165498631 -23780923 - MIR SINE MIR -7 255 112 2410 88 0 0 chr6 165498631 165498926 -23780628 + AluSx SINE Alu 1 295 -17 238 338 42 84 chr6 165498926 165499007 -23780547 - MIR SINE MIR -150 112 29 35 71 0 0 chr6 165499015 165499085 -23780469 + AT_rich Low_complexity Low_complexity 1 70 0 1824 151 0 26 chr6 165499097 165499408 -23780146 - AluJb SINE Alu 0 312 10 2272 95 0 7 chr6 165499485 165499780 -23779774 + AluSg SINE Alu 7 299 -11 780 234 105 51 chr6 165500439 165500927 -23778627 - L1ME LINE L1 -721 5443 4899 2319 99 0 0 chr6 165500936 165501240 -23778314 + AluSc SINE Alu 1 304 -5 2369 87 10 0 chr6 165501512 165501810 -23777744 + AluSq SINE Alu 1 301 -12 648 108 0 0 chr6 165502651 165502734 -23776820 + AluS SINE Alu 2 84 -228 368 158 0 0 chr6 165502880 165502937 -23776617 - L1 LINE L1 -1209 4937 4881 2517 77 0 0 chr6 165503399 165503712 -23775842 - AluSq SINE Alu 0 313 1 1436 175 32 8 chr6 165504001 165504253 -23775301 + AluJo SINE Alu 1 258 -54 1825 135 24 35 chr6 165504493 165504782 -23774772 + AluJb SINE Alu 12 297 -15 253 184 13 40 chr6 165504800 165504876 -23774678 - L1ME3A LINE L1 -1 6169 6096 386 327 37 23 chr6 165505273 165505490 -23774064 + HAL1 LINE L1 155 374 -2133 594 232 79 119 chr6 165505505 165505634 -23773920 + HAL1 LINE L1 1296 1429 -1078 1679 181 17 3 chr6 165505634 165505926 -23773628 + AluJo SINE Alu 1 296 -16 594 232 79 119 chr6 165505926 165506477 -23773077 + HAL1 LINE L1 1429 2139 -368 394 300 33 0 chr6 165506566 165506686 -23772868 + HAL1 LINE L1 2329 2452 -55 2288 101 0 16 chr6 165506782 165507099 -23772455 + AluSx SINE Alu 1 312 0 432 287 70 9 chr6 165507529 165507644 -23771910 - L2 LINE L2 -14 3258 3137 2407 118 19 28 chr6 165507678 165508042 -23771512 - MER46B DNA MER2_type 0 236 1 1980 134 7 7 chr6 165508055 165508346 -23771208 - AluSx SINE Alu -21 291 1 2298 123 0 0 chr6 165508445 165508755 -23770799 + AluSx SINE Alu 1 310 -2 2409 93 3 0 chr6 165509370 165509681 -23769873 + AluSx SINE Alu 1 312 0 180 0 0 0 chr6 165510396 165510416 -23769138 + (A)n Simple_repeat Simple_repeat 1 20 0 2000 136 0 7 chr6 165510422 165510709 -23768845 + AluSx SINE Alu 26 310 -2 23 0 0 0 chr6 165510956 165510979 -23768575 + AT_rich Low_complexity Low_complexity 1 23 0 366 271 35 0 chr6 165511016 165511101 -23768453 + MER69A DNA AcHobo 2 89 -88 2057 100 43 7 chr6 165511120 165511400 -23768154 - AluSx SINE Alu -22 290 1 289 176 0 160 chr6 165511401 165511520 -23768034 + MER69A DNA AcHobo 78 177 0 1575 196 32 0 chr6 165511558 165511838 -23767716 + AluJo SINE Alu 1 289 -23 2362 66 0 3 chr6 165511910 165512198 -23767356 + AluY SINE Alu 1 287 -24 2355 89 0 17 chr6 165512254 165512556 -23766998 + AluSc SINE Alu 1 297 -12 365 198 124 33 chr6 165512708 165512829 -23766725 - L2 LINE L2 0 3313 3182 466 346 55 0 chr6 165512884 165513066 -23766488 - L2 LINE L2 -579 2735 2544 254 28 0 28 chr6 165513173 165513209 -23766345 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1760 120 4 11 chr6 165513214 165513480 -23766074 - AluJb SINE Alu -38 274 11 37 23 0 0 chr6 165513895 165513939 -23765615 + AT_rich Low_complexity Low_complexity 1 44 0 2193 107 3 23 chr6 165513958 165514267 -23765287 - AluSx SINE Alu -7 305 3 29 47 0 0 chr6 165514760 165514803 -23764751 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 165515225 165515246 -23764308 + AT_rich Low_complexity Low_complexity 1 21 0 2266 84 3 3 chr6 165515247 165515531 -23764023 - AluSg SINE Alu -24 286 3 1502 98 0 15 chr6 165515631 165515835 -23763719 + AluSg/x SINE Alu 103 303 -7 474 236 11 58 chr6 165516257 165516431 -23763123 - L1MC4 LINE L1 -33 8009 7844 236 200 0 0 chr6 165516509 165516554 -23763000 - L1MB8 LINE L1 -2 6176 6132 22 0 0 0 chr6 165517034 165517056 -23762498 + AT_rich Low_complexity Low_complexity 1 22 0 2115 95 3 35 chr6 165518596 165518881 -23760673 + AluSx SINE Alu 1 276 -36 198 0 0 0 chr6 165518885 165518907 -23760647 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2586 58 3 0 chr6 165519117 165519425 -23760129 - AluY SINE Alu -2 309 1 261 0 0 0 chr6 165519814 165519843 -23759711 + (TG)n Simple_repeat Simple_repeat 2 30 0 1759 143 7 51 chr6 165520074 165520367 -23759187 + AluJo SINE Alu 3 282 -30 1850 117 12 4 chr6 165520506 165520755 -23758799 - AluSx SINE Alu -61 251 1 1502 124 97 0 chr6 165520900 165521126 -23758428 - AluY SINE Alu -63 248 1 2303 88 10 0 chr6 165521734 165522028 -23757526 + AluSx SINE Alu 1 297 -15 2334 95 0 0 chr6 165522241 165522537 -23757017 - AluSc SINE Alu -13 296 1 2206 99 17 0 chr6 165523002 165523295 -23756259 - AluSg SINE Alu -12 298 1 1844 132 32 26 chr6 165523298 165523608 -23755946 - AluSx SINE Alu 0 312 1 2184 96 3 26 chr6 165524508 165524810 -23754744 + AluSx SINE Alu 1 295 -17 239 219 109 0 chr6 165525314 165525378 -23754176 + MIR SINE MIR 83 153 -55 309 288 124 26 chr6 165527436 165527589 -23751965 - MIR SINE MIR -49 213 46 2412 90 0 0 chr6 165527589 165527889 -23751665 - AluSg SINE Alu -10 300 1 245 239 0 45 chr6 165528490 165528557 -23750997 - L2 LINE L2 0 3272 3209 418 185 37 7 chr6 165528620 165528725 -23750829 - MIR SINE MIR -54 208 101 1795 165 28 0 chr6 165528726 165529017 -23750537 + AluJo SINE Alu 1 299 -13 813 190 51 13 chr6 165529022 165529180 -23750374 + AluJb SINE Alu 137 300 -12 275 319 88 0 chr6 165529185 165529276 -23750278 - MIR SINE MIR -157 105 7 664 297 119 14 chr6 165529503 165529924 -23749630 - L2 LINE L2 -955 2359 1895 2124 131 0 10 chr6 165531237 165531543 -23748011 + AluSx SINE Alu 1 303 -9 800 265 13 39 chr6 165532147 165532318 -23747236 - MIR SINE MIR -30 232 67 2143 113 31 0 chr6 165532318 165532609 -23746945 - AluJb SINE Alu -12 300 1 800 265 13 39 chr6 165532609 165532671 -23746883 - MIR SINE MIR -195 67 5 2003 115 66 0 chr6 165533626 165533912 -23745642 - AluSx SINE Alu -7 305 1 272 186 0 0 chr6 165534126 165534169 -23745385 + Alu SINE Alu 1 43 -258 1691 61 14 9 chr6 165534488 165534702 -23744852 + AluY SINE Alu 87 301 -10 1176 117 31 0 chr6 165534702 165534864 -23744690 + AluSq SINE Alu 134 300 -13 23 0 0 0 chr6 165534971 165534994 -23744560 + AT_rich Low_complexity Low_complexity 1 23 0 2082 148 0 3 chr6 165535145 165535450 -23744104 - AluJb SINE Alu -8 304 1 2192 131 0 3 chr6 165535938 165536251 -23743303 + AluSx SINE Alu 1 312 0 309 235 118 72 chr6 165536610 165536668 -23742886 - MIR SINE MIR -56 206 152 2441 89 0 0 chr6 165536668 165536971 -23742583 - AluSp SINE Alu -10 303 1 309 235 118 72 chr6 165536971 165537065 -23742489 - MIR SINE MIR -110 152 47 369 347 52 28 chr6 165538288 165538337 -23741217 - L1MC/D LINE L1 -2156 5652 5606 1735 184 21 0 chr6 165538337 165538620 -23740934 - AluJb SINE Alu -20 292 4 369 347 52 28 chr6 165538620 165538783 -23740771 - L1MC/D LINE L1 -2202 5606 5435 2369 81 10 3 chr6 165538852 165539148 -23740406 - AluSg SINE Alu -12 298 1 2526 62 0 23 chr6 165539281 165539457 -23740097 - AluY SINE Alu -12 299 131 2554 74 0 0 chr6 165539457 165539768 -23739786 - AluY SINE Alu 0 311 1 2526 62 0 23 chr6 165539768 165539897 -23739657 - AluY SINE Alu -180 131 1 227 231 0 0 chr6 165540098 165540150 -23739404 + L1ME4a LINE L1 5813 5864 -257 2238 88 16 9 chr6 165540520 165540837 -23738717 - L1PA11 LINE L1 0 6174 5856 228 353 29 22 chr6 165540837 165540973 -23738581 + MER117 DNA MER1_type 60 196 -1 471 263 95 0 chr6 165540973 165541110 -23738444 - MIR3 SINE MIR -22 186 37 243 276 89 8 chr6 165541508 165541631 -23737923 + L1ME4a LINE L1 5961 6093 -28 709 177 18 0 chr6 165541823 165541936 -23737618 - FLAM_A SINE Alu -18 115 1 1982 144 0 39 chr6 165541974 165542286 -23737268 + AluJb SINE Alu 1 300 -12 1900 159 3 10 chr6 165543191 165543505 -23736049 + AluJb SINE Alu 1 312 0 2125 113 0 3 chr6 165544572 165544879 -23734675 - AluSx SINE Alu 0 306 1 2365 99 0 0 chr6 165545064 165545368 -23734186 + AluY SINE Alu 1 304 -7 983 113 0 0 chr6 165545722 165545855 -23733699 - FLAM_C SINE Alu 0 133 1 304 227 0 15 chr6 165546243 165546309 -23733245 - Charlie7 DNA MER1_type -1 2611 2547 1010 142 0 0 chr6 165546310 165546481 -23733073 - AluSg/x SINE Alu 0 305 135 207 246 16 0 chr6 165548046 165548107 -23731447 + L2 LINE L2 3192 3253 -19 2163 104 3 20 chr6 165548291 165548589 -23730965 + AluSq SINE Alu 1 293 -20 2107 150 0 17 chr6 165548924 165549278 -23730276 - L1MA7 LINE L1 -3 6288 5941 202 307 34 34 chr6 165550400 165550576 -23728978 + L2 LINE L2 1731 1906 -1408 2229 112 3 0 chr6 165550633 165550928 -23728626 + AluSc SINE Alu 1 296 -13 358 308 8 23 chr6 165551164 165551297 -23728257 + LTR67 LTR ERVL 384 514 -43 206 295 19 76 chr6 165551558 165551663 -23727891 - MER5A DNA MER1_type -47 142 44 794 242 79 5 chr6 165551694 165551909 -23727645 + MIR SINE MIR 14 244 -18 453 271 14 14 chr6 165552548 165552688 -23726866 + L2 LINE L2 2486 2625 -689 2099 125 17 3 chr6 165553316 165553613 -23725941 + AluSx SINE Alu 1 301 -11 576 0 0 0 chr6 165553614 165553678 -23725876 + (AATAG)n Simple_repeat Simple_repeat 2 65 0 495 0 0 0 chr6 165554485 165554540 -23725014 + (CA)n Simple_repeat Simple_repeat 2 56 0 317 195 0 11 chr6 165554706 165554829 -23724725 + MLT1A1 LTR MaLR 1 156 -209 4195 123 13 32 chr6 165554874 165555551 -23724003 + L1PA13 LINE L1 5493 6156 -7 1240 201 5 5 chr6 165555567 165555791 -23723763 + MLT1A1 LTR MaLR 142 365 0 1489 123 127 32 chr6 165556138 165556391 -23723163 + AluJo SINE Alu 4 280 -32 255 61 0 0 chr6 165556391 165556424 -23723130 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 241 264 19 0 chr6 165556448 165556501 -23723053 + L2 LINE L2 3200 3253 -19 647 220 102 0 chr6 165557067 165557253 -23722301 - LTR37A LTR ERV1 0 426 222 265 187 67 27 chr6 165557354 165557429 -23722125 - LTR37A LTR ERV1 -226 200 123 559 318 137 24 chr6 165557955 165558244 -23721310 + L3 LINE CR1 935 1190 -387 222 37 0 0 chr6 165558244 165558271 -23721283 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 559 318 137 24 chr6 165558271 165558513 -23721041 + L3 LINE CR1 1190 1526 -51 2044 115 63 41 chr6 165558526 165558890 -23720664 - THE1C LTR MaLR 0 375 4 25 31 0 0 chr6 165560237 165560269 -23719285 + AT_rich Low_complexity Low_complexity 1 32 0 1991 131 0 14 chr6 165560269 165560560 -23718994 - AluSq SINE Alu -26 287 1 1515 140 98 21 chr6 165560870 165561155 -23718399 - AluJo SINE Alu -5 307 1 976 247 65 54 chr6 165561843 165562359 -23717195 + PABL_B LTR ERV1 1 667 0 25 0 0 0 chr6 165562446 165562471 -23717083 + AT_rich Low_complexity Low_complexity 1 25 0 1827 146 91 76 chr6 165563830 165563998 -23715556 + LTR8 LTR ERV1 1 165 -526 1477 184 96 0 chr6 165563998 165564280 -23715274 + AluJb SINE Alu 1 309 -3 1827 146 91 76 chr6 165564280 165564508 -23715046 + LTR8 LTR ERV1 165 403 -288 776 117 0 18 chr6 165564514 165564625 -23714929 + LTR8 LTR ERV1 583 691 0 299 240 135 0 chr6 165564669 165564773 -23714781 - MIR SINE MIR -73 189 72 3991 60 14 4 chr6 165564802 165565316 -23714238 - L1PA6 LINE L1 -3 6151 5633 386 261 179 10 chr6 165565530 165565725 -23713829 - L1ME LINE L1 -364 5757 5530 385 245 168 17 chr6 165565860 165566125 -23713429 - L1ME LINE L1 -732 5434 5286 180 0 0 0 chr6 165566126 165566146 -23713408 + (TA)n Simple_repeat Simple_repeat 2 21 0 1770 158 7 0 chr6 165566146 165566444 -23713110 - AluSx SINE Alu -12 300 1 22 0 0 0 chr6 165566651 165566673 -23712881 + AT_rich Low_complexity Low_complexity 1 22 0 185 338 126 39 chr6 165566773 165567004 -23712550 - L2 LINE L2 -1679 1635 1385 189 0 0 0 chr6 165567148 165567169 -23712385 + (TCCC)n Simple_repeat Simple_repeat 2 22 0 511 214 115 22 chr6 165567574 165567756 -23711798 + MIR SINE MIR 56 254 -8 1572 162 10 26 chr6 165568262 165568565 -23710989 - AluSx SINE Alu -13 299 2 2415 83 0 0 chr6 165569314 165569627 -23709927 - AluSq SINE Alu 0 313 1 23 78 0 0 chr6 165570158 165570209 -23709345 + GC_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr6 165570304 165570328 -23709226 + GC_rich Low_complexity Low_complexity 1 24 0 205 246 16 16 chr6 165570783 165570844 -23708710 + G-rich Low_complexity Low_complexity 4 64 0 34 0 0 0 chr6 165571134 165571168 -23708386 + GC_rich Low_complexity Low_complexity 1 34 0 853 164 58 12 chr6 165571594 165571765 -23707789 + AluJo SINE Alu 121 299 -13 450 257 21 7 chr6 165571996 165572140 -23707414 - L1MEc LINE L1 -5493 903 758 25 0 0 0 chr6 165572506 165572531 -23707023 + AT_rich Low_complexity Low_complexity 1 25 0 28 61 0 0 chr6 165572636 165572685 -23706869 + AT_rich Low_complexity Low_complexity 1 49 0 1603 238 99 17 chr6 165573125 165573650 -23705904 + L1MEc LINE L1 36 603 -5793 643 205 70 19 chr6 165573660 165573816 -23705738 + L1MA10 LINE L1 6169 6332 -2 2007 152 36 25 chr6 165574077 165574288 -23705266 - MLT1A1 LTR MaLR 0 365 146 1987 121 0 0 chr6 165574288 165574597 -23704957 - AluSg SINE Alu 0 309 1 2007 152 36 25 chr6 165574597 165574745 -23704809 - MLT1A1 LTR MaLR -219 146 1 322 259 0 59 chr6 165574815 165574900 -23704654 + MIR SINE MIR 183 262 0 533 271 25 75 chr6 165576214 165576264 -23703290 - L3 LINE CR1 -108 1469 1418 1948 196 42 36 chr6 165576264 165576758 -23702796 - LOR1a LTR ERV1 0 497 1 533 271 25 75 chr6 165576758 165576947 -23702607 - L3 LINE CR1 -159 1418 1242 527 337 16 5 chr6 165577017 165577201 -23702353 + MIR SINE MIR 71 256 -6 204 365 0 0 chr6 165577213 165577298 -23702256 - L3 LINE CR1 -788 789 705 5488 152 30 60 chr6 165577308 165577355 -23702199 - L1MA9 LINE L1 -1 6311 6264 1873 109 3 34 chr6 165577355 165577649 -23701905 + AluSg SINE Alu 6 290 -20 5488 152 30 60 chr6 165577649 165579303 -23700251 - L1MA9 LINE L1 -48 6264 4667 2086 124 3 0 chr6 165579303 165579601 -23699953 - AluSx SINE Alu -13 299 1 5488 152 30 60 chr6 165579601 165579977 -23699577 - L1MA9 LINE L1 -1645 4667 4281 766 144 17 8 chr6 165579988 165580106 -23699448 - AluJ SINE Alu -21 291 173 701 174 0 0 chr6 165580111 165580220 -23699334 - AluJ SINE Alu -202 110 2 6036 182 22 40 chr6 165580221 165581529 -23698025 - L1MA9 LINE L1 -1858 4288 3004 1191 199 128 45 chr6 165581529 165581866 -23697688 - MLT1A1 LTR MaLR 0 365 1 6036 182 22 40 chr6 165581866 165581950 -23697604 - L1MA9 LINE L1 -3142 3004 2920 789 282 15 46 chr6 165581951 165582137 -23697417 - L3 LINE CR1 -858 719 542 2070 97 20 7 chr6 165582137 165582435 -23697119 - AluSp SINE Alu -10 303 2 789 282 15 46 chr6 165582435 165582507 -23697047 - L3 LINE CR1 -1035 542 469 21 0 0 0 chr6 165582572 165582593 -23696961 + AT_rich Low_complexity Low_complexity 1 21 0 247 213 0 0 chr6 165583107 165583154 -23696400 + L1M4 LINE L1 4176 4222 -1924 346 231 51 34 chr6 165583170 165583287 -23696267 - L1MEc LINE L1 -5363 1496 1378 915 245 153 22 chr6 165583314 165583784 -23695770 - MLT1G LTR MaLR -28 562 1 390 270 13 3 chr6 165583804 165583958 -23695596 - L1MEc LINE L1 -5443 1511 1399 451 314 111 13 chr6 165584223 165584538 -23695016 - L1MEc LINE L1 -5915 1223 878 6670 180 19 53 chr6 165584557 165585134 -23694420 + L1P4 LINE L1 3804 4399 -1767 234 62 0 0 chr6 165585134 165585166 -23694388 + (CA)n Simple_repeat Simple_repeat 2 33 0 6670 180 19 53 chr6 165585166 165585828 -23693726 + L1P4 LINE L1 4399 4960 -1206 2074 128 0 0 chr6 165585828 165586132 -23693422 - AluSq SINE Alu -9 304 1 6670 180 19 53 chr6 165586132 165586679 -23692875 + L1P4 LINE L1 4960 5524 -642 4183 134 23 13 chr6 165588477 165589161 -23690393 + L1PA16 LINE L1 5476 6166 0 1544 188 3 19 chr6 165589280 165589589 -23689965 + AluJo SINE Alu 1 304 -8 1994 104 4 0 chr6 165590165 165590467 -23689087 + AluSx SINE Alu 3 305 0 208 197 42 42 chr6 165590778 165590849 -23688705 + T-rich Low_complexity Low_complexity 5 75 0 542 173 0 0 chr6 165590943 165591024 -23688530 - AluJ/FLAM SINE Alu -230 82 2 624 105 0 0 chr6 165591057 165591143 -23688411 - AluY SINE Alu -18 293 208 290 346 106 11 chr6 165592733 165592921 -23686633 - L2 LINE L2 -193 3079 2874 1081 246 13 25 chr6 165592921 165593171 -23686383 - L1M4 LINE L1 -3147 2999 2751 2106 104 0 0 chr6 165593171 165593474 -23686080 - AluSx SINE Alu 0 305 3 1081 246 13 25 chr6 165593474 165593539 -23686015 - L1M4 LINE L1 -3395 2751 2687 887 88 8 0 chr6 165594702 165594827 -23684727 + AluSp SINE Alu 1 126 -187 475 157 0 0 chr6 165594895 165594965 -23684589 - MER75 DNA T2_type -444 70 1 213 39 0 0 chr6 165595451 165595477 -23684077 + (A)n Simple_repeat Simple_repeat 1 26 0 329 299 54 91 chr6 165595564 165595805 -23683749 - L2 LINE L2 -25 3247 3016 221 243 57 0 chr6 165598016 165598086 -23681468 + CT-rich Low_complexity Low_complexity 3 76 0 189 0 0 0 chr6 165598266 165598287 -23681267 + (TG)n Simple_repeat Simple_repeat 2 22 0 224 246 66 33 chr6 165598303 165598364 -23681190 - L2 LINE L2 0 3272 3210 864 129 0 30 chr6 165598382 165598514 -23681040 + FLAM_C SINE Alu 1 128 -5 13105 88 11 0 chr6 165598514 165601040 -23678514 - L1PA6 LINE L1 -4 6465 3899 6410 135 76 12 chr6 165601043 165602319 -23677235 - L1PA6 LINE L1 -4483 1978 620 956 233 127 30 chr6 165602559 165602889 -23676665 - MLT1A1 LTR MaLR -3 362 1 390 151 0 0 chr6 165603411 165603484 -23676070 + (TG)n Simple_repeat Simple_repeat 1 73 0 1844 151 3 7 chr6 165603812 165604116 -23675438 - AluJb SINE Alu -9 303 1 667 280 91 30 chr6 165605635 165606075 -23673479 + L2 LINE L2 2532 3014 -299 186 43 0 0 chr6 165606129 165606152 -23673402 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1710 164 7 0 chr6 165606319 165606612 -23672942 + AluSx SINE Alu 1 295 -17 1144 216 20 16 chr6 165606624 165606874 -23672680 - MLT1D LTR MaLR -2 503 253 525 253 120 12 chr6 165608673 165608698 -23670856 - MER34B LTR ERV1 -83 482 461 576 0 0 0 chr6 165608698 165608762 -23670792 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 525 253 120 12 chr6 165608762 165609001 -23670553 - MER34B LTR ERV1 -104 461 148 1388 269 13 36 chr6 165609046 165609597 -23669957 - L1M4 LINE L1 -2739 3643 3106 614 278 78 32 chr6 165609596 165610161 -23669393 - L1M4 LINE L1 -3769 2613 2029 * 1376 213 62 36 chr6 165610233 165610687 -23668867 + MLT1D LTR MaLR 41 504 -1 396 204 11 11 chr6 165663929 165664022 -23615532 + MER41E LTR ERV1 419 511 -1 273 250 56 0 chr6 165664024 165664132 -23615422 + L1MC4a LINE L1 5354 5467 -695 386 370 93 14 chr6 165665496 165665785 -23613769 + L1MC4a LINE L1 5596 5907 -1901 1035 194 30 87 chr6 165666537 165666872 -23612682 - MER33 DNA MER1_type -8 316 1 1916 156 0 0 chr6 165666894 165667177 -23612377 + AluSx SINE Alu 2 284 -28 732 144 0 8 chr6 165667059 165667177 -23612377 + AluSc SINE Alu 165 305 0 217 0 0 0 chr6 165667177 165667201 -23612353 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 370 284 16 0 chr6 165668437 165668564 -23610990 + HAL1 LINE L1 1497 1625 -882 2167 209 25 25 chr6 165668566 165669096 -23610458 - MLT1E2 LTR MaLR -8 618 89 226 301 39 39 chr6 165668964 165669120 -23610434 - MLT2C1 LTR ERVL -172 225 70 * 214 227 0 61 chr6 165669176 165669242 -23610312 + C-rich Low_complexity Low_complexity 4 65 0 350 273 67 95 chr6 165669852 165669944 -23609610 + L1MEc LINE L1 2146 2162 -4053 1993 132 7 13 chr6 165669944 165670247 -23609307 + AluJo SINE Alu 1 301 -11 350 273 67 95 chr6 165670247 165670407 -23609147 + L1MEc LINE L1 2162 2325 -3890 2100 121 0 7 chr6 165671059 165671356 -23608198 + AluSg SINE Alu 1 295 -15 1943 158 7 7 chr6 165671556 165671866 -23607688 + AluSx SINE Alu 1 310 -2 187 328 0 0 chr6 165672352 165672416 -23607138 - MIR SINE MIR -64 144 81 273 390 38 12 chr6 165676544 165677011 -23602543 - HERV16 LTR ERVL -2046 3608 3123 357 264 0 0 chr6 165677037 165677124 -23602430 + MER58B DNA MER1_type 220 306 -35 471 346 53 14 chr6 165677128 165677522 -23602032 - HERV16 LTR ERVL -2848 2148 1743 541 352 72 14 chr6 165677746 165678235 -23601319 - HERV16 LTR ERVL -3540 1456 940 213 94 0 0 chr6 165679457 165679489 -23600065 + (TG)n Simple_repeat Simple_repeat 2 33 0 1297 245 10 3 chr6 165681862 165682160 -23597394 - AluJo SINE Alu -9 303 4 24 32 0 0 chr6 165682166 165682197 -23597357 + AT_rich Low_complexity Low_complexity 1 31 0 4192 198 45 6 chr6 165682221 165683535 -23596019 + L1PA16 LINE L1 4802 6165 -1 1754 274 167 12 chr6 165684271 165685026 -23594528 + L1M4 LINE L1 291 1162 -5380 349 239 174 0 chr6 165685134 165685243 -23594311 + MLT1A1 LTR MaLR 2 129 -236 2166 125 0 0 chr6 165685250 165685531 -23594023 + AluSq SINE Alu 1 281 -32 1004 87 0 33 chr6 165685535 165685719 -23593835 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 270 42 62 0 chr6 165685719 165685767 -23593787 + GA-rich Low_complexity Low_complexity 4 54 0 1104 245 28 11 chr6 165685777 165686249 -23593305 + L1MC4a LINE L1 5042 5530 -743 780 212 32 87 chr6 165686320 165686631 -23592923 + MLT2B3 LTR ERVL 1 294 -260 532 298 61 29 chr6 165686710 165687052 -23592502 - HERV16 LTR ERVL -3642 1354 1002 33 25 0 0 chr6 165688710 165688750 -23590804 + AT_rich Low_complexity Low_complexity 1 40 0 237 98 0 0 chr6 165689189 165689230 -23590324 + (TG)n Simple_repeat Simple_repeat 1 41 0 23 54 0 0 chr6 165689864 165689901 -23589653 + AT_rich Low_complexity Low_complexity 1 37 0 4380 205 25 13 chr6 165690082 165690358 -23589196 + L1PA16 LINE L1 4458 4729 -1437 2712 36 0 3 chr6 165690358 165690665 -23588889 + AluY SINE Alu 2 307 -4 288 0 0 0 chr6 165690665 165690697 -23588857 + (TA)n Simple_repeat Simple_repeat 2 33 0 4380 205 25 13 chr6 165690697 165691412 -23588142 + L1PA16 LINE L1 4729 5434 -732 2555 58 7 0 chr6 165691412 165691721 -23587833 - AluY SINE Alu 0 311 1 4380 205 25 13 chr6 165691721 165692415 -23587139 + L1PA16 LINE L1 5434 6164 -2 556 228 60 6 chr6 165693517 165693684 -23585870 - MER119 DNA MER1_type -38 545 370 180 0 0 0 chr6 165694559 165694579 -23584975 + (T)n Simple_repeat Simple_repeat 1 20 0 311 363 54 0 chr6 165695091 165695259 -23584295 + L1MC4a LINE L1 5753 5929 -1879 489 183 11 0 chr6 165695986 165696079 -23583475 + FRAM SINE Alu 54 147 -29 290 167 0 0 chr6 165696099 165696159 -23583395 - L1MB2 LINE L1 -4 6167 6108 1009 215 64 103 chr6 165696263 165696333 -23583221 - MLT1D LTR MaLR 0 505 434 1787 131 41 0 chr6 165696333 165696624 -23582930 + AluSc SINE Alu 3 304 0 1009 215 64 103 chr6 165696624 165697049 -23582505 - MLT1D LTR MaLR -71 434 28 537 222 48 8 chr6 165697184 165697310 -23582244 + FRAM SINE Alu 1 124 -52 504 173 0 0 chr6 165697312 165697422 -23582132 + AluJo/FRAM SINE Alu 203 312 0 996 110 0 15 chr6 165697521 165697657 -23581897 + AluSp SINE Alu 1 134 -179 293 271 125 7 chr6 165697657 165697842 -23581712 + L1MEc LINE L1 2324 2499 -3885 671 212 15 0 chr6 165697892 165698024 -23581530 - FLAM_C SINE Alu -8 135 2 599 260 58 43 chr6 165698077 165698423 -23581131 + L1MEc LINE L1 3105 3455 -2927 3731 145 58 49 chr6 165699068 165699364 -23580190 + LTR19C LTR ERV1 1 293 -486 2333 105 0 0 chr6 165699364 165699668 -23579886 - AluSq SINE Alu -9 304 1 3731 145 58 49 chr6 165699668 165700143 -23579411 + LTR19C LTR ERV1 293 779 0 1166 108 46 5 chr6 165701288 165701482 -23578072 - LTR19C LTR ERV1 -577 202 1 942 292 196 8 chr6 165701553 165702057 -23577497 - L1M4 LINE L1 -5653 889 291 4558 208 39 21 chr6 165702788 165704678 -23574876 - L1PA16 LINE L1 -3 6163 4243 2224 115 0 10 chr6 165704678 165704983 -23574571 - AluSg SINE Alu -8 302 1 4558 208 39 21 chr6 165704983 165705105 -23574449 - L1PA16 LINE L1 -1923 4243 4125 297 298 48 12 chr6 165706744 165706912 -23572642 - L1MC4 LINE L1 -177 7865 7692 265 362 19 0 chr6 165707315 165707522 -23572032 - L1ME LINE L1 -536 5634 5424 1481 209 10 7 chr6 165708174 165708476 -23571078 + AluJo SINE Alu 4 306 -6 276 77 0 0 chr6 165710801 165710840 -23568714 + (CA)n Simple_repeat Simple_repeat 2 40 0 525 346 82 22 chr6 165712125 165712614 -23566940 + HERV16 LTR ERVL 940 1457 -3539 369 354 72 10 chr6 165712837 165713214 -23566340 + HERV16 LTR ERVL 1743 2145 -3340 351 274 38 0 chr6 165713230 165713336 -23566218 - MER58B DNA MER1_type -35 306 197 285 384 27 10 chr6 165713343 165713635 -23565919 + HERV16 LTR ERVL 3123 3419 -2066 198 143 0 0 chr6 165715294 165715329 -23564225 + (CCCCG)n Simple_repeat Simple_repeat 3 37 0 194 313 0 0 chr6 165716859 165716923 -23562631 + MIR SINE MIR 81 144 -64 2544 38 0 0 chr6 165717410 165717726 -23561828 - L1PA5 LINE L1 0 6154 5839 2146 133 0 0 chr6 165717726 165718020 -23561534 - AluSx SINE Alu -18 294 1 1840 159 7 23 chr6 165718240 165718549 -23561005 - AluSg SINE Alu -2 308 5 320 298 101 19 chr6 165719199 165719357 -23560197 - L1M4 LINE L1 -3865 2281 2111 1985 125 13 7 chr6 165719357 165719660 -23559894 - AluJo SINE Alu -5 307 3 2152 219 25 21 chr6 165720517 165721043 -23558511 + MLT1E2 LTR MaLR 91 618 -8 374 284 16 0 chr6 165721045 165721172 -23558382 - HAL1 LINE L1 -882 1625 1497 2036 144 3 3 chr6 165722349 165722647 -23556907 - AluSx SINE Alu -13 299 2 1053 209 21 78 chr6 165722669 165723004 -23556550 + MER33 DNA MER1_type 1 316 -8 234 354 88 15 chr6 165723757 165724031 -23555523 - L1MC/D LINE L1 -1901 5907 5614 286 252 54 0 chr6 165725408 165725519 -23554035 - L1MC/D LINE L1 -708 5470 5354 2570 179 12 6 chr6 165725520 165726029 -23553525 - MER41E LTR ERV1 0 512 1 788 256 0 8 chr6 165726098 165726362 -23553192 - L1P LINE L1 -785 5369 5109 329 246 6 0 chr6 165726471 165726642 -23552912 + (CA)n Simple_repeat Simple_repeat 1 172 0 977 133 0 0 chr6 165727215 165727343 -23552211 - AluSg SINE Alu -149 161 34 3602 216 24 3 chr6 165727343 165728264 -23551290 - L1P LINE L1 -754 5392 4453 28 29 0 0 chr6 165728443 165728478 -23551076 + AT_rich Low_complexity Low_complexity 1 35 0 1608 119 152 19 chr6 165731372 165731641 -23547913 - AluSx SINE Alu -7 305 1 2077 127 7 0 chr6 165731641 165731932 -23547622 - AluSg SINE Alu -14 296 3 180 77 0 0 chr6 165732459 165732485 -23547069 + (GGA)n Simple_repeat Simple_repeat 2 27 0 584 344 61 30 chr6 165732548 165733548 -23546006 + HERV16 LTR ERVL 787 1881 -3115 532 246 8 0 chr6 165733554 165733684 -23545870 - MER58B DNA MER1_type -16 325 195 256 313 26 17 chr6 165734437 165734552 -23545002 + MER58B DNA MER1_type 226 341 0 1987 147 3 3 chr6 165736069 165736382 -23543172 - AluSq SINE Alu 0 313 1 239 159 16 16 chr6 165736439 165736502 -23543052 + L1MB2 LINE L1 6104 6166 -5 212 297 0 0 chr6 165738072 165738136 -23541418 + MIR SINE MIR 81 144 -64 1323 168 85 39 chr6 165739707 165740184 -23539370 + MER51A LTR ERV1 1 575 -59 480 269 8 0 chr6 165741119 165741249 -23538305 + MER58B DNA MER1_type 195 325 -16 495 322 38 21 chr6 165741256 165741492 -23538062 - HERV16 LTR ERVL -3116 1880 1641 379 319 80 43 chr6 165741660 165742149 -23537405 - HERV16 LTR ERVL -3604 1392 886 2505 90 3 0 chr6 165742373 165742683 -23536871 - AluSp SINE Alu -2 311 1 224 164 15 0 chr6 165743611 165743678 -23535876 + (TG)n Simple_repeat Simple_repeat 1 68 0 735 249 52 42 chr6 165743958 165744359 -23535195 - L1M4 LINE L1 -2927 3455 3051 865 143 15 0 chr6 165744360 165744493 -23535061 + FLAM_C SINE Alu 1 135 -8 562 271 74 19 chr6 165744499 165744928 -23534626 - L1M4 LINE L1 -3810 2572 2126 552 191 0 0 chr6 165744932 165745037 -23534517 - AluJo/FRAM SINE Alu -4 308 204 366 172 0 0 chr6 165745040 165745098 -23534456 - AluJo/FRAM SINE Alu -42 260 203 381 138 0 0 chr6 165745100 165745158 -23534396 - AluJo/FRAM SINE Alu -42 260 203 419 198 12 0 chr6 165745160 165745241 -23534313 - FRAM SINE Alu -52 124 43 1132 225 70 57 chr6 165745420 165745891 -23533663 + MLT1D LTR MaLR 28 504 -1 274 206 0 0 chr6 165745993 165746056 -23533498 + L1MB2 LINE L1 6105 6167 -4 431 167 0 0 chr6 165746081 165746159 -23533395 - FRAM SINE Alu -53 123 46 305 341 93 17 chr6 165746880 165747170 -23532384 - L1MC4a LINE L1 -1901 5907 5596 201 236 0 42 chr6 165748312 165748384 -23531170 + GA-rich Low_complexity Low_complexity 1 69 0 250 285 53 0 chr6 165748512 165748630 -23530924 - L1MC4a LINE L1 -693 5485 5354 2946 148 12 4 chr6 165748631 165749139 -23530415 - MER41E LTR ERV1 0 512 1 1329 277 17 12 chr6 165749180 165749663 -23529891 - L1MC4a LINE L1 -757 5389 4905 329 184 66 26 chr6 165749739 165749815 -23529739 + LTR16B LTR ERVL 382 460 -4 1518 228 3 0 chr6 165750009 165750307 -23529247 - AluJo SINE Alu -13 299 1 211 342 63 0 chr6 165751055 165751166 -23528388 - L2 LINE L2 -17 3296 3179 380 238 6 0 chr6 165751598 165751766 -23527788 + (CA)n Simple_repeat Simple_repeat 2 170 0 1090 228 8 8 chr6 165752273 165752527 -23527027 + MER119 DNA MER1_type 127 380 -203 311 248 75 8 chr6 165754364 165754497 -23525057 + MER119 DNA MER1_type 369 510 -73 2115 146 0 3 chr6 165754509 165754818 -23524736 - AluSc SINE Alu -1 308 1 1822 210 36 0 chr6 165755957 165756347 -23523207 - L1PA16 LINE L1 -2 6164 5761 914 242 74 27 chr6 165756450 165756721 -23522833 + MLT2D LTR ERVL 93 381 -33 468 0 0 0 chr6 165756721 165756773 -23522781 + (CA)n Simple_repeat Simple_repeat 2 53 0 914 242 74 27 chr6 165756773 165756799 -23522755 + MLT2D LTR ERVL 381 404 -10 275 179 15 0 chr6 165757073 165757140 -23522414 + (CA)n Simple_repeat Simple_repeat 2 69 0 207 0 0 0 chr6 165757495 165757518 -23522036 + (CAA)n Simple_repeat Simple_repeat 2 24 0 381 258 71 11 chr6 165757623 165757805 -23521749 - L1MC4 LINE L1 -177 7865 7673 273 321 107 26 chr6 165758193 165758539 -23521015 - L1ME LINE L1 -538 5632 5259 219 36 0 0 chr6 165758697 165758725 -23520829 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2385 69 0 14 chr6 165758727 165759016 -23520538 - AluY SINE Alu -26 285 1 2098 107 11 0 chr6 165759020 165759332 -23520222 - AluSp SINE Alu 0 315 1 2390 67 0 19 chr6 165759575 165759888 -23519666 + AluY SINE Alu 1 307 -4 1020 147 0 0 chr6 165760396 165760552 -23519002 + AluSg/x SINE Alu 157 312 0 370 299 125 44 chr6 165760555 165761111 -23518443 + L1ME3A LINE L1 5303 5888 -282 243 196 0 0 chr6 165761174 165761225 -23518329 + Alu SINE Alu 248 298 -4 198 0 0 0 chr6 165762014 165762036 -23517518 + (TTA)n Simple_repeat Simple_repeat 1 22 0 284 294 30 55 chr6 165762076 165762277 -23517277 - MLT1K LTR MaLR -1 587 392 240 241 37 0 chr6 165765425 165765479 -23514075 + MLT2D LTR ERVL 231 286 -128 235 175 0 111 chr6 165765630 165765693 -23513861 + MLT2D LTR ERVL 231 286 -128 277 268 39 8 chr6 165766332 165766459 -23513095 + L2 LINE L2 2857 2987 -285 281 233 75 90 chr6 165766511 165766644 -23512910 + L2 LINE L2 2905 3035 -237 287 113 113 0 chr6 165766776 165766829 -23512725 + MADE1 DNA Mariner 1 59 -21 338 111 0 0 chr6 165766850 165766904 -23512650 + MADE1 DNA Mariner 27 80 0 189 280 220 30 chr6 165766908 165767040 -23512514 + L2 LINE L2 3155 3311 -2 976 219 3 58 chr6 165767221 165767531 -23512023 - L1 LINE L1 -1441 4705 4413 987 221 28 104 chr6 165768156 165768590 -23510964 - MLT2B3 LTR ERVL -4 550 150 1306 208 46 5 chr6 165768683 165769156 -23510398 - L1M4 LINE L1 -648 5530 5040 216 200 0 0 chr6 165769156 165769206 -23510348 + T-rich Low_complexity Low_complexity 4 53 0 * 291 161 0 0 chr6 165769196 165769252 -23510302 + CT-rich Low_complexity Low_complexity 1 56 0 207 132 0 53 chr6 165769261 165769299 -23510255 + (TTCCC)n Simple_repeat Simple_repeat 5 40 0 1948 145 0 7 chr6 165769299 165769582 -23509972 - AluSq SINE Alu -32 281 1 451 193 175 0 chr6 165769584 165769698 -23509856 - MLT1A1 LTR MaLR -231 134 1 1607 264 171 16 chr6 165769801 165770560 -23508994 - L1M4 LINE L1 -5380 1162 286 234 0 0 0 chr6 165771029 165771055 -23508499 + (A)n Simple_repeat Simple_repeat 1 26 0 4399 181 13 0 chr6 165771311 165772399 -23507155 - L1PA16 LINE L1 -9 6157 5022 994 206 15 5 chr6 165772402 165772601 -23506953 + AluJo SINE Alu 89 289 -23 2938 22 0 0 chr6 165772863 165773181 -23506373 + AluYb8 SINE Alu 1 318 0 195 377 130 5 chr6 165774864 165775233 -23504321 - L2 LINE L2 -31 3241 2827 225 197 0 0 chr6 165775284 165775360 -23504194 + (CA)n Simple_repeat Simple_repeat 2 77 0 616 326 56 8 chr6 165777186 165777604 -23501950 + HERV16 LTR ERVL 1669 2113 -3062 349 282 18 0 chr6 165777651 165777761 -23501793 - MER58B DNA MER1_type -35 306 195 225 178 0 0 chr6 165779273 165779318 -23500236 + (CCCCG)n Simple_repeat Simple_repeat 5 49 0 188 275 231 0 chr6 165779463 165779554 -23500000 - MIR SINE MIR -70 192 81 2169 118 6 13 chr6 165781402 165781715 -23497839 - AluSx SINE Alu -1 311 1 2134 120 3 3 chr6 165781910 165782219 -23497335 - AluSg SINE Alu -1 309 1 386 307 111 49 chr6 165782879 165783040 -23496514 - L1MEd LINE L1 -3890 2239 2089 229 0 83 0 chr6 165783040 165783076 -23496478 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1904 93 0 79 chr6 165783079 165783369 -23496185 - AluY SINE Alu -44 267 1 1922 129 7 14 chr6 165783375 165783669 -23495885 - AluJo SINE Alu -18 294 3 386 307 111 49 chr6 165783669 165783903 -23495651 - L1MEd LINE L1 -4045 2084 1832 2040 211 25 21 chr6 165784558 165785078 -23494476 + MLT1E2 LTR MaLR 97 618 -8 407 271 19 0 chr6 165785080 165785225 -23494329 - HAL1b LINE L1 -807 1625 392 22 0 0 0 chr6 165785451 165785473 -23494081 + AT_rich Low_complexity Low_complexity 1 22 0 1267 290 59 33 chr6 165786499 165787378 -23492176 + L1MEd LINE L1 457 1235 -4834 380 289 40 95 chr6 165787445 165787872 -23491682 - L1MEd LINE L1 -4924 1195 800 1863 144 3 31 chr6 165787872 165788185 -23491369 - AluSx SINE Alu 0 305 1 779 176 15 136 chr6 165788199 165788343 -23491211 + MER33 DNA MER1_type 1 154 -2470 2548 48 3 0 chr6 165788343 165788637 -23490917 + AluY SINE Alu 1 295 -16 779 176 15 136 chr6 165788637 165788878 -23490676 + MER33 DNA MER1_type 154 355 -8 1879 179 0 3 chr6 165789038 165789335 -23490219 + AluJb SINE Alu 1 296 -16 568 274 68 65 chr6 165790238 165790486 -23489068 + MIR SINE MIR 1 249 -13 283 287 139 9 chr6 165790510 165790618 -23488936 + MIR3 SINE MIR 41 162 -46 2346 58 34 3 chr6 165791175 165791468 -23488086 - AluY SINE Alu -9 302 1 21 0 0 0 chr6 165791696 165791717 -23487837 + AT_rich Low_complexity Low_complexity 1 21 0 1380 140 59 92 chr6 165791842 165792113 -23487441 - AluSx SINE Alu -10 302 41 2345 65 0 36 chr6 165792545 165792852 -23486702 + AluY SINE Alu 1 296 -15 250 304 11 33 chr6 165793827 165793919 -23485635 + MIR SINE MIR 36 125 -83 234 354 0 0 chr6 165794097 165794162 -23485392 + L2 LINE L2 3247 3311 -2 212 271 17 34 chr6 165794771 165794830 -23484724 - MIR SINE MIR -182 80 23 1719 169 3 17 chr6 165795358 165795654 -23483900 + AluJb SINE Alu 1 292 -20 2563 51 0 22 chr6 165795656 165795972 -23483582 + AluY SINE Alu 1 309 -2 257 250 56 56 chr6 165796424 165796532 -23483022 + MIR3 SINE MIR 51 158 -50 341 293 48 14 chr6 165797739 165797879 -23481675 - MIR SINE MIR -65 143 18 1931 101 0 132 chr6 165797988 165798123 -23481431 + AluSx SINE Alu 1 64 -238 2408 82 3 0 chr6 165798123 165798414 -23481140 + AluY SINE Alu 1 292 -19 1931 101 0 132 chr6 165798414 165798626 -23480928 + AluSx SINE Alu 64 302 0 201 74 0 0 chr6 165798877 165798904 -23480650 + (AGGGGG)n Simple_repeat Simple_repeat 4 30 0 1358 179 60 58 chr6 165799620 165799984 -23479570 - MLT1A1 LTR MaLR 0 365 1 579 282 157 9 chr6 165800004 165800220 -23479334 + MIR SINE MIR 12 259 -3 2177 55 74 4 chr6 165801015 165801315 -23478239 + AluY SINE Alu 1 311 0 208 394 71 13 chr6 165801328 165801483 -23478071 - MIR SINE MIR -65 197 34 775 142 0 54 chr6 165801930 165802078 -23477476 - FRAM SINE Alu 0 176 37 2505 72 0 13 chr6 165802088 165802392 -23477162 - AluY SINE Alu -11 300 1 1059 131 131 25 chr6 165802392 165802590 -23476964 + Tigger7 DNA MER2_type 2273 2491 0 732 169 28 21 chr6 165802614 165802756 -23476798 - AluJo SINE Alu -168 144 2 183 42 0 0 chr6 165802764 165802788 -23476766 + (TTG)n Simple_repeat Simple_repeat 2 25 0 421 304 6 6 chr6 165802790 165802948 -23476606 - MER110A LTR ERV1 -2 466 309 2492 83 0 0 chr6 165802979 165803280 -23476274 + AluSg SINE Alu 1 301 -9 315 289 58 19 chr6 165803714 165803818 -23475736 - MIR SINE MIR -150 112 5 278 290 130 30 chr6 165804259 165804359 -23475195 - L3b LINE CR1 -34 1549 1440 1167 93 37 0 chr6 165804372 165804534 -23475020 + AluY SINE Alu 136 303 -8 183 278 41 62 chr6 165804566 165804663 -23474891 - L3b LINE CR1 -193 1390 1296 288 346 65 51 chr6 165805584 165805937 -23473617 - L2 LINE L2 -1 3271 2914 2159 129 0 13 chr6 165806726 165807029 -23472525 + AluSx SINE Alu 1 299 -13 278 276 48 29 chr6 165807426 165807531 -23472023 + L2 LINE L2 3160 3266 -47 1489 227 74 0 chr6 165807902 165808281 -23471273 - MER90 LTR ERV1 -2 573 167 2571 117 3 13 chr6 165808282 165808666 -23470888 + MER48 LTR ERV1 1 380 -7 14305 96 19 6 chr6 165808666 165810724 -23468830 + HERVH48 LTR ERV1 4571 6654 0 2601 122 31 15 chr6 165810724 165811116 -23468438 + MER48 LTR ERV1 1 398 0 520 153 100 58 chr6 165811116 165811276 -23468278 - MER90 LTR ERV1 -404 210 1 581 283 23 23 chr6 165811762 165811939 -23467615 + MIR SINE MIR 12 188 -74 425 383 0 12 chr6 165812131 165812293 -23467261 + MIR SINE MIR 33 192 -70 2305 147 40 17 chr6 165812557 165813034 -23466520 + L1MA8 LINE L1 4183 4670 -1476 * 4935 160 46 18 chr6 165813028 165813757 -23465797 + L1MA8 LINE L1 5016 5793 -498 1879 102 4 8 chr6 165813757 165814011 -23465543 + AluSp SINE Alu 53 305 -8 4935 160 46 18 chr6 165814011 165814517 -23465037 + L1MA8 LINE L1 5793 6284 -7 989 242 66 40 chr6 165814545 165814642 -23464912 - L1ME3 LINE L1 -116 6046 5953 2326 106 3 0 chr6 165814642 165814986 -23464568 - AluSp SINE Alu 0 313 1 989 242 66 40 chr6 165814986 165815235 -23464319 - L1ME3 LINE L1 -209 5953 5691 24 0 0 0 chr6 165815501 165815525 -23464029 + AT_rich Low_complexity Low_complexity 1 24 0 1559 69 0 30 chr6 165815579 165815782 -23463772 - AluY SINE Alu -9 302 106 1973 138 3 3 chr6 165815976 165816290 -23463264 + AluSx SINE Alu 1 314 0 2542 50 0 3 chr6 165816325 165816622 -23462932 + AluY SINE Alu 1 296 -15 383 275 207 53 chr6 165816915 165817330 -23462224 + L2 LINE L2 2190 2668 -646 2147 163 35 41 chr6 165817638 165817934 -23461620 - Tigger2a DNA MER2_type -2275 433 139 2252 62 0 4 chr6 165817934 165818207 -23461347 - AluY SINE Alu -1 310 39 2147 163 35 41 chr6 165818207 165818345 -23461209 - Tigger2a DNA MER2_type -2569 139 2 263 155 9 3 chr6 165818857 165819083 -23460471 + AluJo SINE Alu 1 302 0 882 148 0 7 chr6 165819847 165819982 -23459572 - AluJo SINE Alu -178 134 1 1787 161 28 109 chr6 165820044 165820399 -23459155 + MLT1B LTR MaLR 3 320 -70 2262 94 0 0 chr6 165820399 165820706 -23458848 + AluSc SINE Alu 1 307 -2 1787 161 28 109 chr6 165820706 165820772 -23458782 + MLT1B LTR MaLR 320 390 0 905 198 43 5 chr6 165821037 165821224 -23458330 - MIR SINE MIR -32 230 37 213 325 62 84 chr6 165821313 165821719 -23457835 + L2 LINE L2 2840 3236 -36 1405 224 68 11 chr6 165822346 165822699 -23456855 + MLT1F LTR MaLR 2 374 -168 605 214 0 8 chr6 165822720 165822837 -23456717 - FLAM_C SINE Alu -26 117 2 763 212 6 36 chr6 165822842 165823007 -23456547 + MLT1F LTR MaLR 378 537 -5 1336 182 99 52 chr6 165824151 165824350 -23455204 - MER44D DNA MER2_type -1882 609 421 2316 70 0 16 chr6 165824350 165824662 -23454892 + AluY SINE Alu 1 307 -4 1336 182 99 52 chr6 165824662 165824786 -23454768 - MER44D DNA MER2_type -2070 421 1 3512 120 269 0 chr6 165825208 165825859 -23453695 - LTR12 LTR ERV1 0 826 1 845 221 41 55 chr6 165825937 165826227 -23453327 - pTR5 LTR ERV1 -1410 1028 743 333 0 0 0 chr6 165827077 165827114 -23452440 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2046 60 45 0 chr6 165827116 165827385 -23452169 - AluY SINE Alu -30 281 1 1600 210 122 38 chr6 165827646 165827812 -23451742 + MER34 LTR ERV1 2 153 -389 2211 99 0 3 chr6 165827812 165828116 -23451438 + AluSq SINE Alu 1 303 -10 1600 210 122 38 chr6 165828116 165828448 -23451106 + MER34 LTR ERV1 153 542 0 396 246 85 8 chr6 165828507 165828637 -23450917 + Charlie8 DNA MER1_type 1 140 -2277 286 226 96 61 chr6 165829027 165829142 -23450412 + MER45A DNA AcHobo 60 178 0 2817 120 44 49 chr6 165829730 165830070 -23449484 - L1MA8 LINE L1 -5 6286 5949 1909 103 4 4 chr6 165830070 165830341 -23449213 - AluSx SINE Alu -41 271 1 2817 120 44 49 chr6 165830341 165830551 -23449003 - L1MA8 LINE L1 -342 5949 5739 4936 138 49 40 chr6 165830552 165830921 -23448633 - L1MA8 LINE L1 -617 5695 5331 1763 130 6 91 chr6 165830921 165831078 -23448476 - L1MA3 LINE L1 -6 6299 6130 1925 122 0 64 chr6 165831078 165831406 -23448148 - AluSx SINE Alu -5 307 1 1763 130 6 91 chr6 165831406 165831425 -23448129 - L1MA3 LINE L1 -175 6130 6111 2110 98 27 0 chr6 165831425 165831721 -23447833 - AluY SINE Alu -7 304 1 1763 130 6 91 chr6 165831721 165831905 -23447649 - L1MA3 LINE L1 -194 6111 5969 4936 138 49 40 chr6 165831905 165832725 -23446829 - L1MA8 LINE L1 -981 5331 4481 288 137 0 0 chr6 165832729 165832780 -23446774 + (TTCC)n Simple_repeat Simple_repeat 4 54 0 445 177 9 5 chr6 165832780 165832795 -23446759 - L1M4 LINE L1 -1635 4511 4498 1566 188 0 28 chr6 165832795 165833083 -23446471 - AluJo SINE Alu -26 286 7 445 177 9 5 chr6 165833083 165833170 -23446384 - L1M4 LINE L1 -1648 4498 4407 2343 84 3 0 chr6 165833171 165833479 -23446075 - AluY SINE Alu -2 309 1 988 82 0 15 chr6 165833481 165833615 -23445939 - AluY SINE Alu -179 132 1 3123 147 34 132 chr6 165833616 165833838 -23445716 - L1M4 LINE L1 -1724 4422 4180 1617 167 0 4 chr6 165833838 165834113 -23445441 - AluSx SINE Alu -38 274 1 3123 147 34 132 chr6 165834113 165834306 -23445248 - L1M4 LINE L1 -1966 4180 3970 1798 148 60 35 chr6 165834306 165834672 -23444882 - THE1C LTR MaLR 0 375 1 3123 147 34 132 chr6 165834672 165834991 -23444563 - L1M4 LINE L1 -2176 3970 3769 2497 118 32 59 chr6 165834991 165835217 -23444337 + MSTA LTR MaLR 1 211 -217 2126 103 3 10 chr6 165835217 165835517 -23444037 - AluSq SINE Alu -15 298 1 2497 118 32 59 chr6 165835517 165835730 -23443824 + MSTA LTR MaLR 211 428 0 3123 147 34 132 chr6 165835730 165835818 -23443736 - L1M4 LINE L1 -2377 3769 3674 1777 234 36 5 chr6 165835860 165836309 -23443245 + MLT1C LTR MaLR 3 465 -2 498 241 64 48 chr6 165837038 165837225 -23442329 + L2 LINE L2 3118 3307 -6 725 228 22 71 chr6 165837979 165838203 -23441351 - MIR SINE MIR -21 241 29 683 227 100 135 chr6 165838392 165838851 -23440703 + MLT1J1 LTR MaLR 1 443 -3 1982 138 43 30 chr6 165839263 165839304 -23440250 - THE1C LTR MaLR 0 375 336 1954 112 42 3 chr6 165839304 165839591 -23439963 + AluSx SINE Alu 1 298 -14 1982 138 43 30 chr6 165839591 165839919 -23439635 - THE1C LTR MaLR -39 336 1 835 194 13 0 chr6 165840192 165840347 -23439207 - FRAM SINE Alu -17 159 3 685 224 36 18 chr6 165840636 165840801 -23438753 - MLT1C LTR MaLR -247 220 53 373 106 0 0 chr6 165841343 165841390 -23438164 - Alu SINE Alu -250 52 6 2379 147 66 2 chr6 165841473 165841867 -23437687 + MSTB LTR MaLR 8 426 0 22 0 0 0 chr6 165841878 165841900 -23437654 + AT_rich Low_complexity Low_complexity 1 22 0 2292 68 0 7 chr6 165842022 165842318 -23437236 - AluY SINE Alu -1 310 17 2087 100 0 4 chr6 165842630 165842954 -23436600 - AluSx SINE Alu 0 325 3 1921 104 0 57 chr6 165842966 165843311 -23436243 - AluSg SINE Alu 0 328 1 315 280 13 0 chr6 165843313 165843388 -23436166 - MER5B DNA MER1_type -36 142 67 297 281 81 62 chr6 165843827 165843987 -23435567 + MIR SINE MIR 85 247 -15 412 298 8 8 chr6 165844640 165844764 -23434790 + MER5C DNA MER1_type 1 124 -200 1090 195 168 19 chr6 165845143 165845405 -23434149 - AluJb SINE Alu 0 302 2 246 385 98 0 chr6 165845649 165845771 -23433783 - L2 LINE L2 -2 3270 3137 461 267 235 0 chr6 165845798 165846019 -23433535 - L2 LINE L2 -32 3281 3009 1471 175 97 52 chr6 165846163 165846512 -23433042 - MLT1A1 LTR MaLR 0 365 1 211 246 14 43 chr6 165846536 165846605 -23432949 - L2 LINE L2 -973 2341 2275 573 308 48 5 chr6 165846816 165847024 -23432530 - MIR SINE MIR -37 225 9 1455 159 21 71 chr6 165847280 165847606 -23431948 + AluJo SINE Alu 2 311 -1 447 243 140 47 chr6 165847738 165847857 -23431697 - MER112 DNA MER1_type -26 234 128 2122 129 49 22 chr6 165847857 165848222 -23431332 + THE1C LTR MaLR 1 375 0 447 243 140 47 chr6 165848222 165848316 -23431238 - MER112 DNA MER1_type -132 128 1 557 314 34 47 chr6 165848491 165848899 -23430655 - L2 LINE L2 -1031 2283 1881 2014 93 7 0 chr6 165851685 165851985 -23427569 + AluSg SINE Alu 1 302 0 21 36 0 0 chr6 165853168 165853196 -23426358 + GC_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 165853261 165853289 -23426265 + GC_rich Low_complexity Low_complexity 1 28 0 613 304 45 36 chr6 165856124 165856344 -23423210 - MIR SINE MIR -13 249 28 769 271 50 29 chr6 165856375 165856652 -23422902 - MER115 DNA AcHobo -32 661 379 474 281 113 35 chr6 165856679 165856882 -23422672 - MER115 DNA AcHobo -370 323 105 2102 106 0 0 chr6 165857205 165857518 -23422036 - AluSg SINE Alu 0 313 1 402 257 134 35 chr6 165858230 165858401 -23421153 - MIR SINE MIR -37 225 38 1496 158 86 4 chr6 165858838 165859117 -23420437 + AluJb SINE Alu 1 302 -10 287 328 25 17 chr6 165859216 165859335 -23420219 + MIR SINE MIR 13 132 -130 294 29 0 0 chr6 165859340 165859375 -23420179 + (TG)n Simple_repeat Simple_repeat 2 36 0 1061 193 116 19 chr6 165859378 165859637 -23419917 - AluJb SINE Alu -17 285 2 526 312 53 93 chr6 165860829 165861550 -23418004 + L2 LINE L2 1934 2625 -689 306 265 15 103 chr6 165861673 165861809 -23417745 - MIR SINE MIR -56 206 83 2714 13 0 0 chr6 165861879 165862188 -23417366 + AluYa5 SINE Alu 1 309 -2 244 254 236 55 chr6 165862223 165862333 -23417221 - MIR SINE MIR -70 192 63 1210 196 56 47 chr6 165862865 165863207 -23416347 + MLT1A2 LTR MaLR 1 345 -29 192 152 0 0 chr6 165863902 165863935 -23415619 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 189 313 135 10 chr6 165864062 165864158 -23415396 + L2 LINE L2 3194 3301 -12 216 240 137 96 chr6 165864430 165864576 -23414978 + MIR3 SINE MIR 53 204 -4 309 263 70 26 chr6 165865433 165865547 -23414007 - MIR SINE MIR -70 192 74 2306 107 0 0 chr6 165865783 165866093 -23413461 + AluSx SINE Alu 1 310 -2 1546 184 71 91 chr6 165867544 165867996 -23411558 - MSTB2 LTR MaLR 0 457 15 27 0 0 0 chr6 165868887 165868914 -23410640 + AT_rich Low_complexity Low_complexity 1 27 0 306 186 14 29 chr6 165869217 165869287 -23410267 + L1ME2 LINE L1 6087 6155 -9 287 316 123 11 chr6 165869327 165869514 -23410040 + L2 LINE L2 1750 1957 -1357 208 268 12 37 chr6 165869562 165869644 -23409910 + (TCCG)n Simple_repeat Simple_repeat 3 82 0 5806 170 27 28 chr6 165869668 165870294 -23409260 - L1MC3 LINE L1 0 7785 7160 2456 54 0 28 chr6 165870294 165870611 -23408943 - AluY SINE Alu -1 310 3 5806 170 27 28 chr6 165870611 165871038 -23408516 - L1MC3 LINE L1 -625 7160 6734 2282 90 6 6 chr6 165871038 165871350 -23408204 + AluSx SINE Alu 1 312 0 5806 170 27 28 chr6 165871350 165872085 -23407469 - L1MC3 LINE L1 -1051 6734 5993 2209 103 3 0 chr6 165872085 165872395 -23407159 - AluSx SINE Alu -1 311 1 5806 170 27 28 chr6 165872395 165872748 -23406806 - L1MC3 LINE L1 -1792 5993 5641 434 243 183 63 chr6 165872749 165873083 -23406471 - L2 LINE L2 -43 3270 2897 2433 59 0 0 chr6 165873150 165873455 -23406099 + AluY SINE Alu 1 305 -6 535 228 84 30 chr6 165873455 165873622 -23405932 - L1ME3A LINE L1 -7 6163 5988 2065 242 38 44 chr6 165873662 165874624 -23404930 - L1ME3A LINE L1 -272 5898 4942 700 108 10 0 chr6 165874624 165874726 -23404828 + U13 snRNA snRNA 1 103 -1 2065 242 38 44 chr6 165874726 165874792 -23404762 - L1ME3A LINE L1 -1228 4942 4877 1905 168 26 17 chr6 165874820 165875172 -23404382 + MLT1A1 LTR MaLR 11 365 0 181 229 96 72 chr6 165875227 165875310 -23404244 + L2 LINE L2 3212 3296 -17 242 196 0 0 chr6 165875554 165875600 -23403954 - L2 LINE L2 -3 3310 3265 2354 65 0 19 chr6 165876110 165876420 -23403134 - AluY SINE Alu -7 304 1 992 118 0 0 chr6 165876989 165877125 -23402429 + AluSq/x SINE Alu 1 136 -176 2227 86 3 7 chr6 165877125 165877428 -23402126 + AluSx SINE Alu 1 302 -10 246 278 9 35 chr6 165877959 165878074 -23401480 + CT-rich Low_complexity Low_complexity 2 113 0 576 130 4 81 chr6 165878182 165878431 -23401123 + (TCTCC)n Simple_repeat Simple_repeat 1 229 0 191 100 0 50 chr6 165878460 165878500 -23401054 + (TCCCC)n Simple_repeat Simple_repeat 2 39 0 230 238 16 16 chr6 165878501 165878564 -23400990 + CT-rich Low_complexity Low_complexity 6 68 0 180 0 0 0 chr6 165878582 165878602 -23400952 + (T)n Simple_repeat Simple_repeat 1 20 0 914 211 125 45 chr6 165878624 165878686 -23400868 + MER63B DNA MER1_type 1 57 -1005 2236 39 11 4 chr6 165878686 165878997 -23400557 + AluY SINE Alu 1 313 0 914 211 125 45 chr6 165878997 165879246 -23400308 + MER63B DNA MER1_type 57 338 -98 1889 123 3 3 chr6 165879323 165879608 -23399946 - AluSx SINE Alu -27 285 1 267 304 45 0 chr6 165880008 165880120 -23399434 - L2 LINE L2 -276 3037 2921 499 303 28 0 chr6 165880151 165880296 -23399258 - MLT1G1 LTR MaLR -4 591 443 1049 287 72 18 chr6 165880336 165880670 -23398884 - MLT1G1 LTR MaLR -243 352 1 288 288 7 115 chr6 165880707 165880749 -23398805 - L2 LINE L2 -8 3305 3260 2347 66 3 3 chr6 165880749 165881053 -23398501 - AluY SINE Alu -7 304 1 288 288 7 115 chr6 165881053 165881149 -23398405 - L2 LINE L2 -53 3260 3182 455 200 56 72 chr6 165881276 165881358 -23398196 + MER63 DNA MER1_type 884 966 -94 1604 135 55 45 chr6 165881358 165881669 -23397885 - L1MC1 LINE L1 -1 6332 6019 455 200 56 72 chr6 165881669 165881766 -23397788 + MER63 DNA MER1_type 966 1060 0 249 310 43 43 chr6 165881845 165881961 -23397593 - L3 LINE CR1 -3 1574 1459 2085 100 10 10 chr6 165882230 165882539 -23397015 - AluSx SINE Alu -3 309 1 891 204 82 4 chr6 165883461 165883692 -23395862 - L1MD3 LINE L1 -13 7982 7734 180 234 31 16 chr6 165884167 165884231 -23395323 - MIR SINE MIR -135 127 63 788 161 43 6 chr6 165884461 165884622 -23394932 - L1MA9 LINE L1 -7 6305 6139 2082 70 11 0 chr6 165884675 165884947 -23394607 - AluY SINE Alu -36 275 1 241 310 116 0 chr6 165884947 165885076 -23394478 + L2 LINE L2 3166 3309 -4 2130 100 0 10 chr6 165885114 165885413 -23394141 + AluSg SINE Alu 1 296 -14 544 280 102 5 chr6 165885545 165885731 -23393823 - MIR SINE MIR 0 262 59 1341 203 71 0 chr6 165889556 165889837 -23389717 + AluJo SINE Alu 2 302 -10 203 143 0 24 chr6 165889837 165889879 -23389675 + (GGGA)n Simple_repeat Simple_repeat 3 43 0 653 212 47 102 chr6 165890182 165890351 -23389203 + MIR SINE MIR 26 178 -84 1923 154 0 0 chr6 165890351 165890657 -23388897 + AluSx SINE Alu 1 306 -6 653 212 47 102 chr6 165890657 165890738 -23388816 + MIR SINE MIR 178 262 0 407 245 78 0 chr6 165890786 165890888 -23388666 + MIR SINE MIR 77 186 -76 996 123 14 0 chr6 165891632 165891778 -23387776 - AluSc SINE Alu -35 274 127 892 229 25 33 chr6 165892605 165892709 -23386845 + MIR SINE MIR 9 112 -150 1595 185 116 6 chr6 165892709 165893038 -23386516 - MLT1A1 LTR MaLR 0 365 1 892 229 25 33 chr6 165893038 165893173 -23386381 + MIR SINE MIR 112 246 -16 2044 167 15 0 chr6 165893175 165893505 -23386049 - MER7A DNA MER2_type 0 346 14 2068 100 17 3 chr6 165893946 165894237 -23385317 - AluSg SINE Alu -15 295 1 1006 176 6 0 chr6 165894800 165894965 -23384589 + Tigger3(Golem) DNA MER2_type 2847 3012 -17 343 303 30 23 chr6 165895129 165895261 -23384293 + L2 LINE L2 3136 3268 -4 536 268 14 7 chr6 165895603 165895741 -23383813 + MIR SINE MIR 100 238 -24 196 318 0 0 chr6 165895899 165895943 -23383611 + L2 LINE L2 3192 3235 -37 845 279 62 36 chr6 165896117 165896475 -23383079 - MLT1I LTR MaLR 0 409 43 183 247 110 65 chr6 165897240 165897394 -23382160 - L2 LINE L2 -454 2860 2700 1852 98 0 16 chr6 165897412 165897668 -23381886 - AluSq SINE Alu -18 295 44 405 0 0 0 chr6 165897679 165897724 -23381830 + (TG)n Simple_repeat Simple_repeat 2 46 0 3178 109 20 4 chr6 165897732 165898228 -23381326 - L1PA13 LINE L1 -7 6156 5653 2392 79 0 0 chr6 165898914 165899217 -23380337 - AluY SINE Alu -8 303 1 23 0 0 0 chr6 165899254 165899277 -23380277 + AT_rich Low_complexity Low_complexity 1 23 0 2104 125 0 6 chr6 165899277 165899590 -23379964 - AluSx SINE Alu -1 311 1 1904 245 168 32 chr6 165900511 165900866 -23378688 + L2 LINE L2 2125 2430 -883 2013 114 7 0 chr6 165900866 165901155 -23378399 - AluSc SINE Alu -17 292 2 1904 245 168 32 chr6 165901155 165901853 -23377701 + L2 LINE L2 2430 3313 0 2040 152 7 10 chr6 165902685 165902995 -23376559 - MER1B DNA MER1_type 0 339 31 492 252 90 79 chr6 165903041 165903307 -23376247 - MLT1F1 LTR MaLR -5 561 276 190 279 209 12 chr6 165903587 165903673 -23375881 + MER5B DNA MER1_type 1 103 -75 189 171 0 0 chr6 165903679 165903714 -23375840 + GA-rich Low_complexity Low_complexity 1 35 0 213 246 16 16 chr6 165904139 165904200 -23375354 - L3 LINE CR1 -149 1428 1368 2197 97 50 39 chr6 165904309 165904669 -23374885 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr6 165905023 165905054 -23374500 + AT_rich Low_complexity Low_complexity 1 31 0 287 370 55 8 chr6 165905637 165905764 -23373790 - L2 LINE L2 -1 3271 3139 1705 145 39 0 chr6 165905789 165906071 -23373483 - AluSq SINE Alu -20 293 1 955 120 0 18 chr6 165906081 165906248 -23373306 - L1MB3 LINE L1 -1 6182 6019 219 296 0 0 chr6 165906751 165906805 -23372749 - L2 LINE L2 -2 3311 3258 220 291 0 0 chr6 165909286 165909341 -23370213 + L2 LINE L2 3187 3241 -31 219 330 11 11 chr6 165909556 165909644 -23369910 + MER5A DNA MER1_type 80 167 -22 1034 224 42 91 chr6 165909702 165910020 -23369534 + MLT1A1 LTR MaLR 2 299 -66 1689 180 7 0 chr6 165910020 165910315 -23369239 + AluJo SINE Alu 1 297 -15 1034 224 42 91 chr6 165910315 165910379 -23369175 + MLT1A1 LTR MaLR 299 365 0 370 94 31 0 chr6 165910615 165910679 -23368875 + (CA)n Simple_repeat Simple_repeat 2 67 0 231 239 22 0 chr6 165911558 165911604 -23367950 + MIR SINE MIR 130 176 -86 188 278 93 0 chr6 165911610 165911664 -23367890 - L2 LINE L2 -5 3308 3250 783 290 93 25 chr6 165911841 165912324 -23367230 - L2 LINE L2 -341 2973 2458 1939 183 28 79 chr6 165913283 165913829 -23365725 - L1MC2 LINE L1 -8 6336 5819 396 297 36 14 chr6 165915065 165915203 -23364351 - MIR3 SINE MIR -45 163 23 1848 108 4 21 chr6 165915980 165916259 -23363295 + AluSx SINE Alu 39 312 0 676 280 163 23 chr6 165916275 165916852 -23362702 + L2 LINE L2 2570 3294 -19 1978 145 0 0 chr6 165917284 165917594 -23361960 - AluSg SINE Alu 0 310 1 304 283 142 33 chr6 165918018 165918138 -23361416 - HAL1 LINE L1 -775 1732 1600 526 151 33 11 chr6 165918142 165918256 -23361298 - MSTD LTR MaLR 0 428 338 752 236 34 104 chr6 165918320 165918647 -23360907 - MSTD LTR MaLR -92 304 1 597 285 48 5 chr6 165918651 165918858 -23360696 - HAL1 LINE L1 -911 1596 1381 25 31 0 0 chr6 165918907 165918939 -23360615 + AT_rich Low_complexity Low_complexity 1 32 0 440 208 17 17 chr6 165919864 165920042 -23359512 + (TG)n Simple_repeat Simple_repeat 1 178 0 455 217 11 11 chr6 165920111 165920291 -23359263 + (TG)n Simple_repeat Simple_repeat 1 180 0 508 194 14 0 chr6 165920327 165920466 -23359088 + (TG)n Simple_repeat Simple_repeat 2 142 0 684 289 53 60 chr6 165921033 165921351 -23358203 + MER102a DNA MER1_type 12 327 -3 885 192 78 0 chr6 165922582 165922775 -23356779 + MER3 DNA MER1_type 2 209 0 1671 167 36 7 chr6 165923089 165923370 -23356184 + MER7A DNA MER2_type 1 287 -59 315 0 0 0 chr6 165923778 165923813 -23355741 + (CA)n Simple_repeat Simple_repeat 2 36 0 488 307 23 17 chr6 165924874 165925050 -23354504 + CT-rich Low_complexity Low_complexity 1 177 0 2121 124 3 0 chr6 165926645 165926950 -23352604 + AluSx SINE Alu 1 306 0 22 0 0 0 chr6 165926991 165927013 -23352541 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr6 165927151 165927193 -23352361 + AT_rich Low_complexity Low_complexity 1 42 0 2541 63 3 0 chr6 165927627 165927926 -23351628 - AluSx SINE Alu -12 300 1 460 184 220 0 chr6 165928444 165928553 -23351001 + AluJb SINE Alu 3 135 -177 2575 59 0 0 chr6 165928553 165928857 -23350697 + AluY SINE Alu 1 304 -7 21 36 0 0 chr6 165928858 165928886 -23350668 + AT_rich Low_complexity Low_complexity 1 28 0 353 246 150 68 chr6 165929024 165929076 -23350478 - HAL1 LINE L1 -114 2393 2347 1920 163 3 13 chr6 165929076 165929383 -23350171 - AluJo SINE Alu -8 304 1 353 246 150 68 chr6 165929383 165929653 -23349901 - HAL1 LINE L1 -160 2347 2101 1976 122 48 0 chr6 165929653 165929947 -23349607 - AluSx SINE Alu 0 307 1 353 246 150 68 chr6 165929947 165930123 -23349431 - HAL1 LINE L1 -406 2101 1852 1853 155 7 3 chr6 165930289 165930586 -23348968 - AluSx SINE Alu -14 298 1 217 251 96 39 chr6 165931685 165931800 -23347754 - MIR3 SINE MIR -104 104 1 394 202 86 35 chr6 165932034 165932203 -23347351 + MIR SINE MIR 4 186 -61 1866 171 0 7 chr6 165932225 165932530 -23347024 - AluJo SINE Alu -9 303 1 217 325 0 12 chr6 165932567 165932650 -23346904 - MIR SINE MIR -1 261 180 2555 141 14 20 chr6 165932705 165933146 -23346408 - L1MC1 LINE L1 -1 6612 6175 2207 116 10 0 chr6 165933197 165933500 -23346054 - AluSx SINE Alu -6 306 1 3938 182 13 13 chr6 165933527 165934935 -23344619 - L1MC1 LINE L1 -424 6189 4777 * 6161 153 32 51 chr6 165934932 165936099 -23343455 - L1MC1 LINE L1 -5271 1155 12 309 315 90 0 chr6 165936099 165936210 -23343344 - MIR SINE MIR -82 180 60 204 325 52 0 chr6 165937681 165937758 -23341796 - L2 LINE L2 0 3313 3233 1752 219 149 22 chr6 165938728 165939185 -23340369 - MER77 LTR ERV1 -10 595 81 957 240 97 48 chr6 165942172 165943090 -23336464 - L1ME3A LINE L1 -289 5881 4905 239 311 96 11 chr6 165943405 165943582 -23335972 - L2 LINE L2 -912 2402 2211 4540 191 13 10 chr6 165943707 165944570 -23334984 - MER6 DNA MER2_type 0 865 1 1876 233 66 66 chr6 165944615 165944999 -23334555 + L1ME2 LINE L1 5443 5826 -338 2405 107 3 0 chr6 165944999 165945308 -23334246 + AluSx SINE Alu 1 310 -2 1876 233 66 66 chr6 165945308 165945515 -23334039 + L1ME2 LINE L1 5826 6037 -127 1883 167 0 13 chr6 165945515 165945821 -23333733 - AluJo SINE Alu -10 302 1 1876 233 66 66 chr6 165945821 165945941 -23333613 + L1ME2 LINE L1 6036 6155 -9 249 293 13 0 chr6 165946104 165946179 -23333375 + CT-rich Low_complexity Low_complexity 4 79 0 218 286 14 14 chr6 165946557 165946627 -23332927 + MIR SINE MIR 51 120 -142 309 51 0 0 chr6 165947045 165947084 -23332470 + (TG)n Simple_repeat Simple_repeat 2 40 0 2188 123 3 0 chr6 165947634 165947934 -23331620 - AluSx SINE Alu -11 301 1 201 74 0 0 chr6 165947987 165948014 -23331540 + (ATG)n Simple_repeat Simple_repeat 3 29 0 514 262 94 53 chr6 165948018 165948262 -23331292 - MIR SINE MIR -7 255 2 245 140 18 35 chr6 165948785 165948842 -23330712 + GA-rich Low_complexity Low_complexity 2 57 0 215 266 29 101 chr6 165949067 165949206 -23330348 + L2 LINE L2 3136 3264 -8 2620 206 60 31 chr6 165949723 165950200 -23329354 + L1ME1 LINE L1 2697 3201 -2945 2329 100 0 13 chr6 165950200 165950511 -23329043 + AluSx SINE Alu 2 308 -4 2620 206 60 31 chr6 165950511 165950713 -23328841 + L1ME1 LINE L1 3201 3396 -2750 2027 132 44 40 chr6 165950723 165951263 -23328291 - MER51A LTR ERV1 0 634 1 376 256 0 23 chr6 165951267 165951353 -23328201 + MER21B LTR ERV1 1 84 -779 3208 213 81 40 chr6 165951380 165952036 -23327518 + MER21B LTR ERV1 19 717 -146 2338 104 0 3 chr6 165952036 165952333 -23327221 + AluSx SINE Alu 1 296 -16 3208 213 81 40 chr6 165952333 165952487 -23327067 + MER21B LTR ERV1 717 863 0 233 29 0 29 chr6 165952537 165952572 -23326982 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 3815 215 59 17 chr6 165952574 165953606 -23325948 + L1ME1 LINE L1 3508 4645 -1501 2320 102 0 7 chr6 165953606 165953909 -23325645 - AluSx SINE Alu -11 301 1 3815 215 59 17 chr6 165953909 165954072 -23325482 + L1ME1 LINE L1 4645 4800 -1346 1764 206 61 25 chr6 165954079 165954606 -23324948 + L1ME1 LINE L1 5616 6178 0 436 286 39 15 chr6 165954638 165954844 -23324710 + L2 LINE L2 1859 2069 -1245 1126 178 15 0 chr6 165954971 165955168 -23324386 + MER3 DNA MER1_type 10 209 0 609 313 58 35 chr6 165955451 165955882 -23323672 + L2 LINE L2 2381 2821 -493 23 33 0 0 chr6 165956391 165956421 -23323133 + AT_rich Low_complexity Low_complexity 1 30 0 712 306 51 4 chr6 165957075 165957350 -23322204 + L1ME4a LINE L1 5635 5922 -199 276 196 0 0 chr6 165957435 165957491 -23322063 + L1ME4a LINE L1 6065 6120 -1 21 0 0 0 chr6 165957516 165957537 -23322017 + AT_rich Low_complexity Low_complexity 1 21 0 569 237 121 14 chr6 165957894 165958109 -23321445 - MER112 DNA MER1_type 0 260 23 577 211 34 27 chr6 165958166 165958313 -23321241 + MER5A DNA MER1_type 1 148 -41 1217 200 41 40 chr6 165958314 165958688 -23320866 - MLT1A2 LTR MaLR 0 457 1 232 204 0 0 chr6 165958688 165958732 -23320822 + MER5A DNA MER1_type 145 188 -1 320 278 31 0 chr6 165958753 165958850 -23320704 + MER5A DNA MER1_type 15 114 -75 180 77 0 0 chr6 165959353 165959379 -23320175 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr6 165960652 165960673 -23318881 + AT_rich Low_complexity Low_complexity 1 21 0 364 266 50 43 chr6 165961982 165962121 -23317433 + MER5B DNA MER1_type 3 142 -36 564 245 160 5 chr6 165962381 165962569 -23316985 - MIR SINE MIR -38 224 8 2253 151 81 2 chr6 165962967 165963364 -23316190 + MSTB1 LTR MaLR 5 432 0 1535 226 112 14 chr6 165964514 165964935 -23314619 + LTR40b LTR ERVL 1 462 0 1680 147 12 4 chr6 165967706 165967983 -23311571 - AluJb SINE Alu 0 309 31 1809 149 19 10 chr6 165968505 165968813 -23310741 + AluJo SINE Alu 1 311 -1 209 32 0 32 chr6 165968817 165968848 -23310706 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 436 289 97 26 chr6 165968890 165969118 -23310436 - MIR SINE MIR -14 248 5 2313 117 48 20 chr6 165969220 165969572 -23309982 - THE1B LTR MaLR 0 364 3 216 324 97 38 chr6 165970080 165970113 -23309441 + MIR SINE MIR 17 47 -215 1961 169 0 0 chr6 165970113 165970408 -23309146 + AluSx SINE Alu 1 295 -17 216 324 97 38 chr6 165970408 165970559 -23308995 + MIR SINE MIR 47 212 -50 1602 164 22 11 chr6 165971844 165972112 -23307442 - AluJo SINE Alu -19 293 23 37 0 0 0 chr6 165972129 165972166 -23307388 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 165972350 165972371 -23307183 + AT_rich Low_complexity Low_complexity 1 21 0 554 265 88 6 chr6 165972781 165972951 -23306603 - MER58C DNA MER1_type -7 208 25 2145 110 0 0 chr6 165973253 165973544 -23306010 + AluSg SINE Alu 1 291 -19 21 0 0 0 chr6 165975604 165975625 -23303929 + AT_rich Low_complexity Low_complexity 1 21 0 2360 148 5 25 chr6 165975787 165975827 -23303727 - MLT2C1 LTR ERVL 0 397 358 432 0 0 0 chr6 165975827 165975875 -23303679 + (CA)n Simple_repeat Simple_repeat 2 49 0 2360 148 5 25 chr6 165975875 165976239 -23303315 - MLT2C1 LTR ERVL -39 358 1 2099 113 3 0 chr6 165976280 165976571 -23302983 + AluSx SINE Alu 2 293 -19 278 328 90 0 chr6 165976648 165976770 -23302784 + L2 LINE L2 3136 3268 -4 935 241 33 21 chr6 165976859 165977100 -23302454 + MIR SINE MIR 19 262 0 2000 170 97 23 chr6 165977329 165977764 -23301790 - MLT1C LTR MaLR 0 467 1 663 254 45 54 chr6 165979086 165979310 -23300244 - MIR SINE MIR -11 251 30 380 111 87 16 chr6 165979422 165979548 -23300006 + (ATATG)n Simple_repeat Simple_repeat 1 135 0 1460 181 33 117 chr6 165979665 165980117 -23299437 + MLT2D LTR ERVL 1 414 0 305 309 63 8 chr6 165980175 165980301 -23299253 + L2 LINE L2 3138 3270 -2 228 243 129 29 chr6 165980595 165980665 -23298889 + MIR SINE MIR 50 126 -136 2387 134 39 0 chr6 165980925 165981313 -23298241 - MER57A LTR ERV1 0 403 1 1832 145 3 29 chr6 165983701 165984011 -23295543 - AluJo SINE Alu -10 302 1 2409 67 0 0 chr6 165986233 165986533 -23293021 - AluY SINE Alu -11 300 1 262 307 71 24 chr6 165986931 165987058 -23292496 + MIR3 SINE MIR 42 174 -34 2184 103 0 10 chr6 165987756 165988058 -23291496 + AluSx SINE Alu 1 299 -13 1436 237 36 8 chr6 165988067 165988425 -23291129 + Cheshire DNA MER1_type 32 399 -2021 1433 104 5 9 chr6 165988570 165988781 -23290773 - AluSg/x SINE Alu -1 311 102 635 121 40 0 chr6 165988964 165989063 -23290491 + MER58 DNA MER1_type 2310 2412 -8 647 293 79 9 chr6 165989356 165989571 -23289983 - MIR SINE MIR 0 262 33 3025 158 49 18 chr6 165989889 165990459 -23289095 - L1MC3 LINE L1 0 7785 7198 487 301 27 67 chr6 165990635 165990934 -23288620 + L2 LINE L2 2981 3267 -5 1941 145 55 60 chr6 165991317 165991751 -23287803 + MSTB1 LTR MaLR 1 432 0 394 297 62 21 chr6 165991763 165991908 -23287646 - MIR SINE MIR -38 224 74 1349 195 43 3 chr6 165991948 165992230 -23287324 + AluJb SINE Alu 1 293 -19 326 174 14 14 chr6 165992492 165992561 -23286993 + HsTC2 DNA Tc2 6 74 -1824 838 171 7 0 chr6 165992843 165992983 -23286571 + FRAM SINE Alu 9 149 -27 321 82 0 0 chr6 165992983 165993032 -23286522 + (GA)n Simple_repeat Simple_repeat 1 49 0 3036 163 58 4 chr6 165993111 165993625 -23285929 + MLT1F LTR MaLR 1 542 0 2206 42 0 4 chr6 165994201 165994466 -23285088 - AluY SINE Alu -14 297 34 315 281 12 120 chr6 165994646 165994813 -23284741 + MER5B DNA MER1_type 1 149 -29 293 296 26 43 chr6 165994935 165995050 -23284504 - MIR3 SINE MIR 0 208 96 3102 206 85 27 chr6 165995643 165995713 -23283841 + MER21B LTR ERV1 12 77 -786 221 75 25 0 chr6 165995713 165995753 -23283801 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 3102 206 85 27 chr6 165995753 165996415 -23283139 + MER21B LTR ERV1 77 786 -77 287 279 18 36 chr6 165999084 165999195 -23280359 - MIR SINE MIR -77 131 23 1675 167 0 27 chr6 165999321 165999621 -23279933 - AluJo SINE Alu -20 292 1 264 59 0 0 chr6 166000397 166000431 -23279123 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 199 256 207 41 chr6 166000458 166000579 -23278975 - L2 LINE L2 0 3313 3173 317 272 108 56 chr6 166000621 166000834 -23278720 - L2 LINE L2 -236 3077 2854 1681 149 3 3 chr6 166001008 166001332 -23278222 + AluJb SINE Alu 2 325 0 1923 128 10 7 chr6 166002337 166002627 -23276927 + AluSx SINE Alu 11 301 -11 779 191 5 8 chr6 166003740 166004014 -23275540 + AluJo SINE Alu 2 242 -70 748 170 85 148 chr6 166004014 166004079 -23275475 - LTR49-int LTR ERV1 -2527 4231 4163 1564 167 68 4 chr6 166004079 166004360 -23275194 - AluJo SINE Alu -9 303 5 748 170 85 148 chr6 166004360 166004612 -23274942 - LTR49-int LTR ERV1 -2595 4163 3934 1638 181 15 0 chr6 166004621 166004891 -23274663 - LTR49-int LTR ERV1 -3078 3680 3407 1400 179 0 36 chr6 166004883 166005135 -23274419 - LTR49-int LTR ERV1 -3745 446 204 * 2040 181 45 100 chr6 166005135 166005362 -23274192 - LTR49-int LTR ERV1 -2617 3714 3476 1695 80 18 0 chr6 166005362 166005588 -23273966 - AluSp SINE Alu -21 292 63 2040 181 45 100 chr6 166005588 166006343 -23273211 - LTR49-int LTR ERV1 -2855 3476 2566 666 247 146 13 chr6 166006392 166006631 -23272923 - MER34C LTR ERV1 -155 430 160 2441 216 28 106 chr6 166006682 166007488 -23272066 - LTR49-int LTR ERV1 -3352 2911 1847 1766 119 8 8 chr6 166007651 166007919 -23271635 + AluSc SINE Alu 21 288 -21 233 239 0 0 chr6 166009382 166009428 -23270126 + MLT1I LTR MaLR 91 136 -273 2206 112 0 0 chr6 166010307 166010603 -23268951 + AluSx SINE Alu 1 296 -16 593 248 56 19 chr6 166010616 166010777 -23268777 + MER45A DNA AcHobo 11 177 -1 4862 88 26 23 chr6 166012862 166013547 -23266007 - LTR12 LTR ERV1 -1 687 1 189 290 77 97 chr6 166014125 166014332 -23265222 - L2 LINE L2 -901 2413 2211 402 211 120 23 chr6 166014370 166014503 -23265051 + MER51B LTR ERV1 1 146 -231 1601 127 44 7 chr6 166014507 166014782 -23264772 + MER51B LTR ERV1 68 352 -25 1103 176 33 29 chr6 166014896 166015141 -23264413 + AluJo SINE Alu 1 246 -66 844 129 116 7 chr6 166015303 166015450 -23264104 + AluSg/x SINE Alu 137 299 -13 220 152 65 0 chr6 166015760 166015806 -23263748 - L2 LINE L2 0 3272 3224 2153 105 0 0 chr6 166017156 166017450 -23262104 - AluSc SINE Alu -15 294 1 534 271 129 0 chr6 166017876 166018031 -23261523 + MIR SINE MIR 72 246 -16 1565 123 0 0 chr6 166018058 166018277 -23261277 + AluSx SINE Alu 62 280 -32 324 0 0 0 chr6 166018278 166018314 -23261240 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2620 114 126 109 chr6 166018410 166019060 -23260494 - MER4A LTR ERV1 -3 661 1 365 285 69 42 chr6 166020088 166020232 -23259322 - MIR3 SINE MIR -36 172 25 219 69 0 0 chr6 166020305 166020334 -23259220 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 180 368 88 15 chr6 166021324 166021460 -23258094 - L2 LINE L2 -5 3267 3122 265 319 111 7 chr6 166022419 166022563 -23256991 + MIR SINE MIR 99 257 -5 2059 128 0 0 chr6 166022643 166022940 -23256614 + AluSx SINE Alu 1 297 -15 1021 142 6 18 chr6 166023312 166023481 -23256073 + L1PB2 LINE L1 5984 6150 -1 1221 261 97 24 chr6 166024198 166024853 -23254701 - L2 LINE L2 -52 3261 2550 190 284 0 98 chr6 166024876 166024978 -23254576 - L2 LINE L2 -879 2435 2344 1761 129 13 48 chr6 166025085 166025396 -23254158 + AluJo SINE Alu 1 300 -12 1182 62 0 0 chr6 166025531 166025675 -23253879 - U4 snRNA snRNA -1 144 1 2107 105 0 27 chr6 166025813 166026108 -23253446 + THE1B LTR MaLR 76 362 -2 3437 206 7 38 chr6 166026720 166027438 -23252116 - ERVL LTR ERVL -4513 1251 556 245 151 41 14 chr6 166028478 166028551 -23251003 + GA-rich Low_complexity Low_complexity 2 76 0 10650 203 65 57 chr6 166029883 166032712 -23246842 - ERVL LTR ERVL -678 5086 2231 1903 101 59 25 chr6 166032712 166032998 -23246556 + AluSq SINE Alu 1 296 -17 10650 203 65 57 chr6 166032998 166033209 -23246345 - ERVL LTR ERVL -3533 2231 2023 1516 141 34 37 chr6 166033200 166033469 -23246085 - ERVL LTR ERVL -3885 1879 1612 * 1906 249 7 16 chr6 166034243 166034681 -23244873 - ERVL LTR ERVL -4135 1629 1196 1242 290 183 2 chr6 166034762 166035280 -23244274 - L2 LINE L2 -911 2403 1792 1589 159 7 42 chr6 166035989 166036297 -23243257 - AluJo SINE Alu -13 299 3 502 266 39 7 chr6 166036393 166036547 -23243007 - LTR45 LTR ERV1 0 525 367 185 209 23 0 chr6 166036552 166036595 -23242959 - MER5A DNA MER1_type -121 68 25 276 226 264 0 chr6 166036620 166036726 -23242828 - LTR45 LTR ERV1 -391 134 1 246 276 29 38 chr6 166036830 166036935 -23242619 - MIR3 SINE MIR -1 207 104 738 190 3 10 chr6 166037324 166037640 -23241914 + CT-rich Low_complexity Low_complexity 1 313 0 25 0 0 0 chr6 166038344 166038369 -23241185 + AT_rich Low_complexity Low_complexity 1 25 0 942 256 60 93 chr6 166038602 166039105 -23240449 + MLT1K LTR MaLR 81 566 -22 247 233 122 33 chr6 166039342 166039432 -23240122 - MIR SINE MIR -67 141 44 24 0 0 0 chr6 166039509 166039533 -23240021 + AT_rich Low_complexity Low_complexity 1 24 0 228 111 0 0 chr6 166040068 166040104 -23239450 + (GGA)n Simple_repeat Simple_repeat 2 37 0 2104 58 0 0 chr6 166040945 166041205 -23238349 - AluY SINE Alu -13 298 39 378 235 27 78 chr6 166041865 166042014 -23237540 - MER5A DNA MER1_type -45 133 2 513 246 189 18 chr6 166042535 166042763 -23236791 - Charlie8 DNA MER1_type -2141 276 10 803 221 98 5 chr6 166042865 166043069 -23236485 - MER58A DNA MER1_type 0 224 2 281 384 12 18 chr6 166044773 166044937 -23234617 + MIR3 SINE MIR 20 182 -26 1973 110 0 14 chr6 166045617 166045907 -23233647 + AluSx SINE Alu 1 286 -26 1799 160 7 16 chr6 166046747 166046941 -23232613 - AluJb SINE Alu 0 329 138 2130 70 49 3 chr6 166046941 166047225 -23232329 - AluY SINE Alu -14 297 1 1799 160 7 16 chr6 166047225 166047362 -23232192 - AluJb SINE Alu -191 138 1 278 314 111 29 chr6 166047455 166047627 -23231927 + MIR SINE MIR 67 252 -10 204 40 0 0 chr6 166047635 166047660 -23231894 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 210 128 0 0 chr6 166048662 166048701 -23230853 + (GA)n Simple_repeat Simple_repeat 2 40 0 2153 183 82 100 chr6 166048729 166049427 -23230127 - LTR8A LTR ERV1 -42 685 1 272 255 52 65 chr6 166050233 166050416 -23229138 - MLT1H LTR MaLR -260 289 76 24 0 0 0 chr6 166050507 166050531 -23229023 + AT_rich Low_complexity Low_complexity 1 24 0 443 275 74 48 chr6 166050822 166050955 -23228599 + LTR33 LTR ERVL 127 270 -251 1935 138 3 0 chr6 166050955 166051252 -23228302 - AluSx SINE Alu -14 298 1 443 275 74 48 chr6 166051252 166051347 -23228207 + LTR33 LTR ERVL 270 361 -160 686 216 33 7 chr6 166051358 166051511 -23228043 - MER45A DNA AcHobo -7 171 15 378 269 62 0 chr6 166051536 166051666 -23227888 + LTR33 LTR ERVL 384 521 0 724 116 0 27 chr6 166053174 166053286 -23226268 - MSTB LTR MaLR 0 432 324 1780 157 43 3 chr6 166053457 166053757 -23225797 - MSTB LTR MaLR -111 315 4 852 182 32 0 chr6 166053901 166054055 -23225499 + FRAM SINE Alu 1 40 0 2070 164 25 0 chr6 166054077 166054431 -23225123 + THE1B LTR MaLR 1 363 -1 769 195 7 0 chr6 166054570 166054719 -23224835 - L1 LINE L1 -1869 4277 4128 1919 137 22 25 chr6 166054725 166055083 -23224471 - Tigger2 DNA MER2_type -2361 357 1 1929 137 0 3 chr6 166056019 166056312 -23223242 + AluSx SINE Alu 18 309 -3 271 196 36 0 chr6 166056610 166056666 -23222888 - Alu SINE Alu -60 241 184 2038 131 0 7 chr6 166057278 166057583 -23221971 + AluSq SINE Alu 1 303 -10 1499 170 162 33 chr6 166057584 166057948 -23221606 - LTR47A LTR ERVL -41 411 1 527 289 46 66 chr6 166058412 166058609 -23220945 - MIR SINE MIR -46 216 24 2264 78 3 0 chr6 166059151 166059445 -23220109 - AluSp SINE Alu -18 295 1 1741 147 0 19 chr6 166059939 166060251 -23219303 - AluJb SINE Alu -1 311 6 1710 191 59 68 chr6 166060803 166061160 -23218394 - MLT1C LTR MaLR 0 467 113 1869 156 0 13 chr6 166061160 166061475 -23218079 - AluJb SINE Alu -1 311 1 1710 191 59 68 chr6 166061475 166061588 -23217966 - MLT1C LTR MaLR -354 113 1 1550 154 27 34 chr6 166061637 166061930 -23217624 - AluJo SINE Alu -21 291 1 2176 83 0 0 chr6 166062533 166062832 -23216722 - AluSc SINE Alu 0 299 1 2026 120 10 0 chr6 166062974 166063275 -23216279 - AluSx SINE Alu -4 308 5 311 258 18 74 chr6 166063344 166063507 -23216047 + MER112 DNA MER1_type 101 254 -6 736 292 111 16 chr6 166063516 166064025 -23215529 + L2 LINE L2 2617 3221 -92 943 276 53 22 chr6 166064030 166064349 -23215205 - LTR16A LTR ERVL -27 423 95 2591 170 60 110 chr6 166064507 166065272 -23214282 + LTR8A LTR ERV1 1 727 0 831 244 81 0 chr6 166066004 166066201 -23213353 - MIR SINE MIR -44 218 6 34 24 0 0 chr6 166066249 166066290 -23213264 + AT_rich Low_complexity Low_complexity 1 41 0 402 276 87 73 chr6 166066290 166067006 -23212548 - L1ME4a LINE L1 -12 6109 5384 600 152 0 0 chr6 166067044 166067136 -23212418 - FLAM_C SINE Alu -24 119 28 1944 159 42 71 chr6 166067171 166067595 -23211959 + MER31B LTR ERV1 1 411 -55 2759 139 124 4 chr6 166067595 166068093 -23211461 + LTR64 LTR ERVK 1 558 0 1944 159 42 71 chr6 166068093 166068146 -23211408 + MER31B LTR ERV1 411 464 -2 231 211 0 99 chr6 166068312 166068383 -23211171 - MER91C DNA MER1_type -24 116 53 5489 164 93 0 chr6 166068384 166069317 -23210237 - LTR28 LTR ERV1 0 1020 1 205 265 44 88 chr6 166069352 166069371 -23210183 + MIR SINE MIR 95 113 -149 2812 117 26 9 chr6 166069371 166069790 -23209764 + MSTB LTR MaLR 1 426 0 205 265 44 88 chr6 166069790 166069838 -23209716 + MIR SINE MIR 113 159 -103 208 302 115 10 chr6 166070282 166070378 -23209176 + MIR SINE MIR 157 262 0 575 334 112 40 chr6 166070704 166070844 -23208710 - L1M4 LINE L1 -2153 3993 3864 979 205 54 0 chr6 166070844 166071068 -23208486 - MER46A DNA MER2_type 0 236 1 575 334 112 40 chr6 166071068 166071472 -23208082 - L1M4 LINE L1 -2282 3864 3410 649 167 16 70 chr6 166071472 166071655 -23207899 + MLT1B LTR MaLR 121 390 0 910 120 0 42 chr6 166071706 166071848 -23207706 + FRAM SINE Alu 21 156 -20 3024 60 0 3 chr6 166072527 166072909 -23206645 - L1PA8 LINE L1 0 6172 5792 191 176 0 0 chr6 166073129 166073163 -23206391 - MIR SINE MIR -13 249 216 250 281 0 16 chr6 166073168 166073232 -23206322 + MLT1C LTR MaLR 404 466 -1 982 179 28 0 chr6 166073544 166073723 -23205831 - MER5A DNA MER1_type 0 189 6 258 243 29 68 chr6 166073803 166073906 -23205648 + MIR SINE MIR 163 261 -1 236 248 57 57 chr6 166074345 166074450 -23205104 + MER5C DNA MER1_type 2 106 -218 623 145 15 46 chr6 166074697 166074828 -23204726 - MER65A LTR ERV1 0 445 319 28 48 0 0 chr6 166074839 166074881 -23204673 + AT_rich Low_complexity Low_complexity 1 42 0 313 164 0 18 chr6 166074881 166074936 -23204618 + MER65A LTR ERV1 316 369 -76 1147 113 0 6 chr6 166074966 166075125 -23204429 - MER65A LTR ERV1 -168 277 120 1701 183 37 11 chr6 166075125 166075475 -23204079 + L1MB4 LINE L1 5822 6180 0 27 29 0 0 chr6 166075518 166075552 -23204002 + AT_rich Low_complexity Low_complexity 1 34 0 333 228 28 0 chr6 166075587 166075694 -23203860 + L1MC4 LINE L1 2006 6983 -1339 383 152 15 15 chr6 166076135 166076201 -23203353 - THE1C LTR MaLR 0 375 310 * 901 131 81 12 chr6 166076192 166076370 -23203184 - THE1C LTR MaLR -208 167 2 1620 144 59 22 chr6 166076370 166076641 -23202913 - AluJo SINE Alu -31 281 1 484 234 15 36 chr6 166077604 166077741 -23201813 + MIR SINE MIR 108 241 -21 202 354 23 54 chr6 166077783 166077913 -23201641 + L2 LINE L2 2756 2881 -433 3268 108 32 2 chr6 166077965 166078437 -23201117 + LTR15 LTR ERV1 1 486 -7 208 345 76 7 chr6 166078440 166078585 -23200969 + L2 LINE L2 2937 3091 -181 255 79 0 0 chr6 166078750 166078788 -23200766 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 271 183 28 14 chr6 166079896 166079967 -23199587 - L1MD3 LINE L1 -11 7984 7913 1345 193 39 68 chr6 166080082 166080405 -23199149 + MLT1A2 LTR MaLR 1 341 -55 2042 151 3 0 chr6 166080405 166080776 -23198778 - AluSq SINE Alu 0 372 1 409 160 0 13 chr6 166080776 166080851 -23198703 + MLT1A2 LTR MaLR 301 374 0 180 0 0 0 chr6 166081140 166081160 -23198394 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 515 241 0 7 chr6 166082617 166082917 -23196637 + (TG)n Simple_repeat Simple_repeat 1 298 0 196 299 201 17 chr6 166083137 166083605 -23195949 - L2 LINE L2 -714 2600 2047 489 223 0 0 chr6 166083675 166083778 -23195776 - MIR SINE MIR -57 205 103 259 214 0 0 chr6 166084231 166084287 -23195267 + MIR SINE MIR 140 195 -67 216 311 27 27 chr6 166084325 166084399 -23195155 - MIR SINE MIR -113 95 22 470 205 66 33 chr6 166086066 166086188 -23193366 - MER63 DNA MER1_type -84 752 1 1070 221 70 81 chr6 166086563 166086844 -23192710 - MER39 LTR ERV1 0 687 404 2355 127 33 25 chr6 166086844 166087205 -23192349 - THE1B LTR MaLR 0 364 1 1070 221 70 81 chr6 166087205 166087446 -23192108 - MER39 LTR ERV1 -283 404 4 3400 145 88 12 chr6 166087565 166088143 -23191411 - LTR26E LTR ERV1 0 622 1 1476 197 266 21 chr6 166088679 166089080 -23190474 - LTR48 LTR ERV1 -9 778 476 1983 140 14 7 chr6 166089080 166089372 -23190182 - AluJo SINE Alu -12 300 7 1476 197 266 21 chr6 166089372 166089575 -23189979 - LTR48 LTR ERV1 -311 476 4 221 56 0 28 chr6 166090623 166090659 -23188895 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 2918 32 29 0 chr6 166090659 166091000 -23188554 - L1PA3 LINE L1 -24 6131 5781 * 3525 18 0 0 chr6 166090997 166091390 -23188164 + L1PA3 LINE L1 5392 5784 -371 369 336 50 45 chr6 166091434 166091791 -23187763 + L2 LINE L2 2246 2604 -710 2866 140 38 7 chr6 166092069 166092520 -23187034 + LTR48B LTR ERV1 180 644 0 209 179 0 0 chr6 166092766 166092805 -23186749 + (CCA)n Simple_repeat Simple_repeat 3 41 0 22 56 0 0 chr6 166092983 166093019 -23186535 + AT_rich Low_complexity Low_complexity 1 36 0 585 289 81 87 chr6 166093913 166094466 -23185088 - L1ME3A LINE L1 -5 6148 5599 1292 296 78 0 chr6 166094466 166094875 -23184679 + LTR16A LTR ERVL 1 441 -9 877 326 44 35 chr6 166094921 166095691 -23183863 - L1MEd LINE L1 -4908 1211 465 950 117 31 0 chr6 166096137 166096265 -23183289 + FLAM_C SINE Alu 1 132 -1 21 0 0 0 chr6 166097009 166097030 -23182524 + AT_rich Low_complexity Low_complexity 1 21 0 432 272 20 0 chr6 166097572 166097719 -23181835 - L1ME3A LINE L1 -989 5140 4991 1671 280 127 17 chr6 166097827 166098823 -23180731 - L1ME3A LINE L1 -2147 3982 2878 704 299 221 5 chr6 166098825 166099408 -23180146 - L1ME3A LINE L1 -3302 2827 2119 24 67 0 0 chr6 166099477 166099522 -23180032 + AT_rich Low_complexity Low_complexity 1 45 0 840 163 0 30 chr6 166099736 166099871 -23179683 + FLAM_A SINE Alu 1 131 -2 596 236 64 77 chr6 166099922 166100312 -23179242 - L1ME3A LINE L1 -4890 1229 845 273 262 10 39 chr6 166100379 166100482 -23179072 - L1ME3A LINE L1 -5286 833 734 2367 100 7 0 chr6 166101087 166101456 -23178098 - AluSx SINE Alu 0 373 3 971 180 0 30 chr6 166101458 166101625 -23177929 - FRAM SINE Alu -4 162 1 214 179 0 0 chr6 166102793 166102832 -23176722 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 2214 110 7 0 chr6 166103413 166103712 -23175842 + AluSc SINE Alu 1 301 -8 2285 113 0 0 chr6 166104163 166104465 -23175089 - AluSq SINE Alu -11 302 1 821 167 67 13 chr6 166104504 166104654 -23174900 - AluJb SINE Alu -23 289 132 305 160 0 0 chr6 166104683 166104733 -23174821 - AluJ/FLAM SINE Alu -239 63 14 340 226 40 56 chr6 166105588 166105744 -23173810 - MIR SINE MIR -45 217 64 183 293 114 57 chr6 166106262 166106385 -23173169 + L2 LINE L2 3141 3270 -2 194 171 26 145 chr6 166107258 166107288 -23172266 - L2 LINE L2 -3 3269 3237 1894 152 24 0 chr6 166107288 166107578 -23171976 - AluJb SINE Alu -15 297 1 194 171 26 145 chr6 166107578 166107623 -23171931 - L2 LINE L2 -35 3237 3203 1451 166 66 10 chr6 166108474 166108763 -23170791 - Charlie4a DNA MER1_type -178 330 26 2571 43 0 0 chr6 166109049 166109348 -23170206 + AluY SINE Alu 1 299 -12 220 303 0 0 chr6 166109584 166109650 -23169904 + (TA)n Simple_repeat Simple_repeat 2 67 0 1932 171 0 3 chr6 166109743 166110048 -23169506 + AluJb SINE Alu 1 304 -8 2035 110 27 30 chr6 166111216 166111517 -23168037 + AluSx SINE Alu 1 300 -12 366 223 143 27 chr6 166111685 166111797 -23167757 - MER63 DNA MER1_type -83 753 3 1684 166 56 9 chr6 166112081 166112418 -23167136 - MLT1A2 LTR MaLR -21 353 1 330 202 64 46 chr6 166112812 166112921 -23166633 + L1MC4 LINE L1 7328 7438 -604 270 239 162 0 chr6 166112914 166113031 -23166523 + L1MC5 LINE L1 7279 7414 -547 * 482 219 172 26 chr6 166113123 166113274 -23166280 + MER5A DNA MER1_type 9 181 -8 226 279 23 23 chr6 166113291 166113377 -23166177 + L1MC4 LINE L1 7625 7710 -332 686 169 49 49 chr6 166114360 166114543 -23165011 - MER5A DNA MER1_type -3 186 4 966 149 7 7 chr6 166115411 166115559 -23163995 - AluJo SINE Alu -39 273 126 24 0 0 0 chr6 166116399 166116423 -23163131 + AT_rich Low_complexity Low_complexity 1 24 0 238 216 78 88 chr6 166117222 166117324 -23162230 - MLT1L LTR MaLR -7 608 508 278 107 0 125 chr6 166117435 166117491 -23162063 + L2 LINE L2 3258 3306 -7 218 263 35 0 chr6 166117536 166117593 -23161961 - MER5A DNA MER1_type -95 94 36 494 328 91 24 chr6 166117630 166117882 -23161672 + L2 LINE L2 2182 2463 -851 2780 111 8 16 chr6 166117882 166118260 -23161294 - THE1C LTR MaLR 0 375 1 494 328 91 24 chr6 166118260 166118336 -23161218 + L2 LINE L2 2463 2532 -782 838 232 32 0 chr6 166118343 166118528 -23161026 + LTR40a LTR ERVL 328 518 -1 489 291 44 40 chr6 166118528 166118755 -23160799 + L2 LINE L2 2934 3161 -152 417 263 95 32 chr6 166118991 166119311 -23160243 - L1ME3A LINE L1 -224 5946 5563 391 253 20 10 chr6 166119454 166119553 -23160001 - MIR SINE MIR -74 134 35 451 280 254 6 chr6 166121276 166121615 -23157939 - LTR33A LTR ERVL -4 519 97 566 236 108 52 chr6 166121895 166122107 -23157447 + MIR SINE MIR 12 235 -27 619 219 23 8 chr6 166125173 166125303 -23154251 + FLAM_A SINE Alu 10 139 -3 2433 144 24 0 chr6 166126155 166126521 -23153033 - MER66A LTR ERV1 0 478 104 3245 72 8 0 chr6 166126521 166126921 -23152633 + MLT2A1 LTR ERVL 1 403 -41 335 275 0 22 chr6 166126924 166127015 -23152539 + L1MC4 LINE L1 6614 6702 -1340 236 132 0 0 chr6 166127019 166127057 -23152497 + MLT2A1 LTR ERVL 390 427 -17 644 24 72 0 chr6 166127059 166127142 -23152412 + MLT2A1 LTR ERVL 356 444 0 362 192 39 26 chr6 166127142 166127220 -23152334 - MER66A LTR ERV1 -373 105 27 669 293 28 9 chr6 166127435 166127647 -23151907 + MIR SINE MIR 47 262 0 502 306 188 43 chr6 166128010 166128748 -23150806 + L3 LINE CR1 676 1520 -57 3371 159 28 79 chr6 166128953 166129735 -23149819 + L1MB7 LINE L1 5423 6164 -20 314 113 210 0 chr6 166130664 166130726 -23148828 - MADE1 DNA Mariner -5 75 1 2648 107 3 0 chr6 166131977 166132340 -23147214 + THE1B LTR MaLR 1 364 0 825 289 97 21 chr6 166132859 166133198 -23146356 - MLT1J2 LTR MaLR -1 449 85 2491 161 13 0 chr6 166133253 166133650 -23145904 + MER57A LTR ERV1 2 403 0 2863 188 19 11 chr6 166133944 166134480 -23145074 + MLT1F LTR MaLR 1 540 -2 247 258 150 17 chr6 166134747 166134867 -23144687 - MIR SINE MIR -69 193 58 822 239 23 18 chr6 166135152 166135370 -23144184 - MIR SINE MIR -28 234 16 211 365 28 9 chr6 166135733 166135840 -23143714 - MER5A DNA MER1_type -2 187 79 1249 176 13 2 chr6 166135980 166136291 -23143263 - MLT1A1 LTR MaLR -2 363 1 8077 191 21 64 chr6 166136605 166138440 -23141114 + MER52A LTR ERV1 1 1755 0 1368 211 125 0 chr6 166138551 166138854 -23140700 + MER58B DNA MER1_type 1 341 0 591 248 56 19 chr6 166140716 166140877 -23138677 - MER45A DNA AcHobo -1 177 11 2326 112 0 0 chr6 166140890 166141185 -23138369 - AluSx SINE Alu -17 295 1 234 239 0 0 chr6 166142064 166142110 -23137444 - MLT1I LTR MaLR -273 136 91 1987 127 7 7 chr6 166143572 166143864 -23135690 - AluSx SINE Alu -20 292 1 204 276 29 38 chr6 166144106 166144211 -23135343 + MIR3 SINE MIR 104 207 -1 271 226 264 0 chr6 166144315 166144421 -23135133 + LTR45 LTR ERV1 1 134 -391 530 264 32 7 chr6 166144494 166144649 -23134905 + LTR45 LTR ERV1 367 525 0 1701 159 7 42 chr6 166144745 166145053 -23134501 + AluJo SINE Alu 3 299 -13 1029 289 184 2 chr6 166145765 166146280 -23133274 + L2 LINE L2 1795 2403 -911 2105 124 7 3 chr6 166146413 166146719 -23132835 + AluSg SINE Alu 1 307 -3 180 77 0 0 chr6 166146794 166146820 -23132734 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 1944 132 26 41 chr6 166146920 166147262 -23132292 + MER1B DNA MER1_type 1 337 0 1586 107 0 0 chr6 166147565 166147771 -23131783 + AluSg SINE Alu 23 228 -82 2153 127 0 0 chr6 166148080 166148372 -23131182 - AluSx SINE Alu -3 309 18 2003 138 11 25 chr6 166149307 166149669 -23129885 + Tigger2 DNA MER2_type 1 357 -2361 5784 152 61 1 chr6 166149675 166150639 -23128915 + L1PB2 LINE L1 4128 5033 -1118 351 0 0 0 chr6 166150639 166150678 -23128876 + (TAA)n Simple_repeat Simple_repeat 2 40 0 5784 152 61 1 chr6 166150678 166151608 -23127946 + L1PB2 LINE L1 5033 6147 -4 2306 91 0 19 chr6 166151651 166151960 -23127594 + AluY SINE Alu 1 303 -8 14586 132 29 15 chr6 166151967 166154290 -23125264 + Tigger2 DNA MER2_type 361 2717 -1 2225 131 3 0 chr6 166154502 166154807 -23124747 - AluSx SINE Alu -6 306 1 206 277 0 0 chr6 166155483 166155530 -23124024 + MIR SINE MIR 81 127 -81 538 271 97 10 chr6 166155543 166155711 -23123843 + MLT1L LTR MaLR 25 216 -399 1839 156 12 90 chr6 166155711 166156134 -23123420 + MLT1B LTR MaLR 1 390 0 538 271 97 10 chr6 166156134 166156172 -23123382 + MLT1L LTR MaLR 216 249 -366 314 286 88 53 chr6 166157472 166157699 -23121855 + L1MEd LINE L1 4 238 -5881 2548 225 54 3 chr6 166157745 166158464 -23121090 - L1ME1 LINE L1 -310 5856 5096 1168 49 0 14 chr6 166158507 166158650 -23120904 + AluY SINE Alu 163 303 -8 874 289 213 12 chr6 166158650 166159414 -23120140 - L2 LINE L2 -687 2627 1710 360 267 65 24 chr6 166160521 166160696 -23118858 - L1MC4a LINE L1 -303 5818 5677 703 133 30 52 chr6 166160996 166161131 -23118423 - FLAM_A SINE Alu -1 132 1 472 268 146 19 chr6 166161268 166161409 -23118145 + MIR SINE MIR 4 181 -81 2182 105 0 3 chr6 166161409 166161733 -23117821 + AluSq SINE Alu 1 323 0 472 268 146 19 chr6 166161733 166161795 -23117759 + MIR SINE MIR 181 234 -28 1803 41 0 14 chr6 166162769 166162988 -23116566 + L1PA7 LINE L1 5934 6149 -5 222 269 92 25 chr6 166163492 166163611 -23115943 + MIR SINE MIR 20 146 -116 963 134 0 0 chr6 166266803 166266982 -23012572 + (CATTC)n Satellite Satellite 1 179 0 663 127 0 0 chr6 166266994 166267112 -23012442 + (CATTC)n Satellite Satellite 2 119 0 849 109 6 33 chr6 166267124 166267307 -23012247 + (CATTC)n Satellite Satellite 2 179 0 1038 139 0 0 chr6 166267336 166267680 -23011874 + (CATTC)n Satellite Satellite 1 344 0 1110 126 0 0 chr6 166267691 166268008 -23011546 + (CATTC)n Satellite Satellite 1 317 0 1044 134 0 11 chr6 166268038 166268478 -23011076 + (CATTC)n Satellite Satellite 1 435 0 927 132 0 0 chr6 166268524 166268698 -23010856 + (CATTC)n Satellite Satellite 2 175 0 1050 131 0 0 chr6 166268710 166268987 -23010567 + (CATTC)n Satellite Satellite 1 277 0 932 124 6 0 chr6 166269019 166269197 -23010357 + (CATTC)n Satellite Satellite 2 180 0 1038 138 3 3 chr6 166269333 166269654 -23009900 + (CATTC)n Satellite Satellite 1 321 0 570 140 0 0 chr6 166269670 166269784 -23009770 + (CATTC)n Satellite Satellite 2 115 0 1242 106 0 0 chr6 166269795 166270153 -23009401 + (CATTC)n Satellite Satellite 1 358 0 1146 106 0 0 chr6 166270165 166270404 -23009150 + (CATTC)n Satellite Satellite 1 239 0 1017 123 0 0 chr6 166270455 166270634 -23008920 + (CATTC)n Satellite Satellite 2 180 0 906 179 0 3 chr6 166270650 166271304 -23008250 + (CATTC)n Satellite Satellite 1 652 0 1026 117 0 0 chr6 166271315 166271494 -23008060 + (CATTC)n Satellite Satellite 2 180 0 1218 95 3 3 chr6 166271530 166271886 -23007668 + (CATTC)n Satellite Satellite 1 356 0 558 162 0 0 chr6 166271897 166272014 -23007540 + (CATTC)n Satellite Satellite 4 120 0 945 145 0 0 chr6 166272025 166272356 -23007198 + (CATTC)n Satellite Satellite 1 331 0 1008 119 0 0 chr6 166272367 166272544 -23007010 + (CATTC)n Satellite Satellite 4 180 0 960 165 0 3 chr6 166272557 166272914 -23006640 + (CATTC)n Satellite Satellite 4 357 0 972 133 0 0 chr6 166272954 166273134 -23006420 + (CATTC)n Satellite Satellite 1 180 0 885 139 0 0 chr6 166273160 166273478 -23006076 + (CATTC)n Satellite Satellite 1 318 0 990 143 2 0 chr6 166273490 166274078 -23005476 + (CATTC)n Satellite Satellite 1 589 0 948 142 0 0 chr6 166274107 166274367 -23005187 + (CATTC)n Satellite Satellite 1 260 0 966 135 0 0 chr6 166274389 166274567 -23004987 + (CATTC)n Satellite Satellite 3 180 0 492 174 0 0 chr6 166274583 166274704 -23004850 + (CATTC)n Satellite Satellite 2 122 0 929 115 0 27 chr6 166274717 166274900 -23004654 + (CATTC)n Satellite Satellite 1 178 0 1169 139 3 16 chr6 166274932 166275296 -23004258 + (CATTC)n Satellite Satellite 1 360 0 720 168 0 0 chr6 166275322 166275495 -23004059 + (CATTC)n Satellite Satellite 2 174 0 918 144 0 0 chr6 166275531 166275711 -23003843 + (CATTC)n Satellite Satellite 1 180 0 1047 149 0 16 chr6 166275722 166276338 -23003216 + (CATTC)n Satellite Satellite 1 606 0 1239 126 0 3 chr6 166276372 166276727 -23002827 + (CATTC)n Satellite Satellite 2 355 0 244 128 0 0 chr6 166276731 166276770 -23002784 + (CATTA)n Simple_repeat Simple_repeat 1 39 0 1134 122 0 7 chr6 166276777 166277046 -23002508 + (CATTC)n Satellite Satellite 2 268 0 1005 144 0 10 chr6 166277057 166277896 -23001658 + (CATTC)n Satellite Satellite 1 830 0 1011 104 0 0 chr6 166277909 166278073 -23001481 + (CATTC)n Satellite Satellite 4 167 0 591 171 0 0 chr6 166278084 166278213 -23001341 + (CATTC)n Satellite Satellite 4 132 0 963 129 0 0 chr6 166278227 166278405 -23001149 + (CATTC)n Satellite Satellite 2 179 0 954 136 0 0 chr6 166278417 166278643 -23000911 + (CATTC)n Satellite Satellite 1 226 0 1122 100 0 0 chr6 166278691 166278871 -23000683 + (CATTC)n Satellite Satellite 1 180 0 683 157 0 27 chr6 166278886 166279071 -23000483 + (CATTC)n Satellite Satellite 1 180 0 1002 122 0 0 chr6 166279086 166279266 -23000288 + (CATTC)n Satellite Satellite 1 180 0 840 170 0 0 chr6 166279279 166279606 -22999948 + (CATTC)n Satellite Satellite 1 327 0 960 126 0 0 chr6 166279617 166279791 -22999763 + (CATTC)n Satellite Satellite 2 175 0 852 151 0 0 chr6 166279816 166279995 -22999559 + (CATTC)n Satellite Satellite 1 179 0 848 154 3 0 chr6 166280006 166280345 -22999209 + (CATTC)n Satellite Satellite 1 340 0 905 124 0 27 chr6 166280360 166280545 -22999009 + (CATTC)n Satellite Satellite 1 180 0 1023 159 0 4 chr6 166280561 166281095 -22998459 + (CATTC)n Satellite Satellite 1 531 0 984 135 0 17 chr6 166281140 166281985 -22997569 + (CATTC)n Satellite Satellite 1 830 0 1119 124 3 3 chr6 166281998 166282312 -22997242 + (CATTC)n Satellite Satellite 1 314 0 984 124 0 0 chr6 166282326 166282504 -22997050 + (CATTC)n Satellite Satellite 2 179 0 1158 144 1 9 chr6 166282526 166283484 -22996070 + (CATTC)n Satellite Satellite 1 950 0 900 156 0 0 chr6 166283495 166283675 -22995879 + (CATTC)n Satellite Satellite 1 180 0 856 105 0 53 chr6 166283872 166284062 -22995492 + (GAATG)n Satellite Satellite 1 180 0 927 146 0 15 chr6 166284087 166284636 -22994918 + (GAATG)n Satellite Satellite 1 718 0 990 135 0 9 chr6 166284696 166285255 -22994299 + (GAATG)n Satellite Satellite 1 554 0 986 122 0 6 chr6 166285281 166285462 -22994092 + (GAATG)n Satellite Satellite 1 180 0 951 144 0 3 chr6 166285482 166285892 -22993662 + (GAATG)n Satellite Satellite 2 586 0 1065 131 0 12 chr6 166285917 166286346 -22993208 + (GAATG)n Satellite Satellite 1 424 0 1161 125 0 7 chr6 166286357 166286706 -22992848 + (GAATG)n Satellite Satellite 2 522 0 997 112 6 6 chr6 166286722 166286900 -22992654 + (GAATG)n Satellite Satellite 3 180 0 852 156 0 0 chr6 166286932 166287112 -22992442 + (GAATG)n Satellite Satellite 1 180 0 1412 67 0 6 chr6 166287145 166287456 -22992098 + (GAATG)n Satellite Satellite 1 488 0 879 145 0 0 chr6 166287518 166287690 -22991864 + (GAATG)n Satellite Satellite 4 175 0 1041 125 0 0 chr6 166287701 166287970 -22991584 + (GAATG)n Satellite Satellite 1 269 0 1131 94 0 0 chr6 166287983 166288163 -22991391 + (GAATG)n Satellite Satellite 1 180 0 761 156 0 20 chr6 166288197 166288443 -22991111 + (GAATG)n Satellite Satellite 1 240 0 672 169 0 0 chr6 166288456 166288610 -22990944 + (GAATG)n Satellite Satellite 4 157 0 1059 99 0 0 chr6 166288621 166288793 -22990761 + (GAATG)n Satellite Satellite 1 172 0 960 133 0 0 chr6 166288848 166289028 -22990526 + (GAATG)n Satellite Satellite 1 180 0 692 151 0 27 chr6 166289053 166289238 -22990316 + (GAATG)n Satellite Satellite 1 180 0 936 128 0 0 chr6 166289258 166289437 -22990117 + (GAATG)n Satellite Satellite 2 180 0 657 190 0 0 chr6 166289473 166289647 -22989907 + (GAATG)n Satellite Satellite 2 175 0 1035 121 0 4 chr6 166289670 166290297 -22989257 + (GAATG)n Satellite Satellite 2 802 0 1086 124 0 4 chr6 166290318 166290676 -22988878 + (GAATG)n Satellite Satellite 1 534 0 1071 131 0 1 chr6 166290701 166291728 -22987826 + (GAATG)n Satellite Satellite 1 1205 0 513 110 0 0 chr6 166291739 166291821 -22987733 + (GAATG)n Satellite Satellite 4 85 0 752 152 6 0 chr6 166291861 166292026 -22987528 + (GAATG)n Satellite Satellite 2 167 0 906 112 2 56 chr6 166292044 166292596 -22986958 + (GAATG)n Satellite Satellite 1 521 0 771 164 0 0 chr6 166292613 166292784 -22986770 + (GAATG)n Satellite Satellite 4 174 0 1122 115 0 2 chr6 166292795 166293367 -22986187 + (GAATG)n Satellite Satellite 1 570 0 969 144 2 2 chr6 166293432 166293787 -22985767 + (GAATG)n Satellite Satellite 1 536 0 1164 75 0 0 chr6 166293812 166294030 -22985524 + (GAATG)n Satellite Satellite 1 218 0 826 154 0 22 chr6 166294057 166294507 -22985047 + (GAATG)n Satellite Satellite 1 439 0 882 144 0 0 chr6 166294522 166294702 -22984852 + (GAATG)n Satellite Satellite 1 180 0 738 165 0 0 chr6 166294715 166294931 -22984623 + (GAATG)n Satellite Satellite 1 216 0 990 93 0 0 chr6 166294947 166295146 -22984408 + (GAATG)n Satellite Satellite 1 199 0 893 139 0 22 chr6 166295172 166295646 -22983908 + (GAATG)n Satellite Satellite 1 463 0 987 115 0 26 chr6 166295657 166296050 -22983504 + (GAATG)n Satellite Satellite 2 549 0 1146 95 0 0 chr6 166296062 166296241 -22983313 + (GAATG)n Satellite Satellite 2 180 0 1152 120 0 13 chr6 166296252 166296982 -22982572 + (GAATG)n Satellite Satellite 1 897 0 944 119 4 17 chr6 166297008 166297300 -22982254 + (GAATG)n Satellite Satellite 1 288 0 1122 100 0 0 chr6 166297326 166297506 -22982048 + (GAATG)n Satellite Satellite 1 180 0 996 112 0 0 chr6 166297519 166297773 -22981781 + (GAATG)n Satellite Satellite 1 254 0 1017 125 0 0 chr6 166297791 166298048 -22981506 + (GAATG)n Satellite Satellite 1 257 0 939 139 0 0 chr6 166298061 166298241 -22981313 + (GAATG)n Satellite Satellite 1 180 0 1106 139 0 3 chr6 166298276 166298781 -22980773 + (GAATG)n Satellite Satellite 1 682 0 918 140 0 0 chr6 166298798 166298977 -22980577 + (GAATG)n Satellite Satellite 1 179 0 1110 100 0 0 chr6 166299002 166299182 -22980372 + (GAATG)n Satellite Satellite 1 180 0 762 167 0 0 chr6 166299212 166299392 -22980162 + (GAATG)n Satellite Satellite 1 180 0 792 145 0 0 chr6 166299418 166299577 -22979977 + (GAATG)n Satellite Satellite 1 159 0 399 113 0 0 chr6 166299590 166299661 -22979893 + (GAATG)n Satellite Satellite 2 72 0 829 135 6 6 chr6 166299673 166299851 -22979703 + (GAATG)n Satellite Satellite 2 179 0 1041 135 0 11 chr6 166299863 166300326 -22979228 + (GAATG)n Satellite Satellite 2 635 0 1209 113 0 0 chr6 166300338 166300692 -22978862 + (GAATG)n Satellite Satellite 1 354 0 951 133 0 12 chr6 166300727 166301146 -22978408 + (GAATG)n Satellite Satellite 1 413 0 906 137 0 0 chr6 166301158 166301481 -22978073 + (GAATG)n Satellite Satellite 1 323 0 1005 128 0 0 chr6 166301507 166301687 -22977867 + (GAATG)n Satellite Satellite 1 180 0 348 192 0 0 chr6 166301702 166301801 -22977753 + (GAATG)n Satellite Satellite 2 100 0 999 142 0 7 chr6 166301812 166302341 -22977213 + (GAATG)n Satellite Satellite 2 700 0 868 105 0 53 chr6 166302362 166302552 -22977002 + (GAATG)n Satellite Satellite 1 180 0 333 153 0 0 chr6 166302567 166302639 -22976915 + (GAATG)n Satellite Satellite 4 75 0 399 62 15 15 chr6 166302757 166302822 -22976732 + (GAATG)n Satellite Satellite 2 66 0 723 179 0 0 chr6 166302833 166303012 -22976542 + (GAATG)n Satellite Satellite 2 180 0 939 134 0 0 chr6 166303038 166303217 -22976337 + (GAATG)n Satellite Satellite 2 180 0 1350 116 0 2 chr6 166303236 166303538 -22976016 + (GAATG)n Satellite Satellite 1 480 0 984 133 0 0 chr6 166303538 166303718 -22975836 + (GAATG)n Satellite Satellite 1 180 0 240 175 0 0 chr6 166303969 166304032 -22975522 + (GAATG)n Satellite Satellite 2 64 0 784 141 0 27 chr6 166304053 166304237 -22975317 + (GAATG)n Satellite Satellite 2 180 0 993 123 0 0 chr6 166304248 166304427 -22975127 + (GAATG)n Satellite Satellite 2 180 0 825 186 0 0 chr6 166304438 166304746 -22974808 + (GAATG)n Satellite Satellite 1 308 0 869 151 0 22 chr6 166304783 166305246 -22974308 + (GAATG)n Satellite Satellite 1 453 0 908 121 0 21 chr6 166305304 166305547 -22974007 + (GAATG)n Satellite Satellite 1 237 0 1275 54 0 0 chr6 166305559 166305727 -22973827 + (GAATG)n Satellite Satellite 2 169 0 1146 133 0 8 chr6 166305738 166306343 -22973211 + (GAATG)n Satellite Satellite 1 779 0 843 171 0 12 chr6 166306354 166306790 -22972764 + (GAATG)n Satellite Satellite 1 430 0 972 151 0 2 chr6 166306801 166307157 -22972397 + (GAATG)n Satellite Satellite 1 535 0 996 119 0 21 chr6 166307168 166307537 -22972017 + (GAATG)n Satellite Satellite 2 536 0 1095 117 0 0 chr6 166307549 166307857 -22971697 + (GAATG)n Satellite Satellite 1 308 0 972 151 0 5 chr6 166307894 166308881 -22970673 + (GAATG)n Satellite Satellite 1 982 0 1044 125 1 20 chr6 166308892 166309420 -22970134 + (GAATG)n Satellite Satellite 4 691 0 1035 117 0 0 chr6 166309436 166309616 -22969938 + (GAATG)n Satellite Satellite 1 180 0 459 189 0 0 chr6 166309632 166309759 -22969795 + (GAATG)n Satellite Satellite 3 129 0 1104 112 0 14 chr6 166309774 166310781 -22968773 + (GAATG)n Satellite Satellite 2 1161 0 936 130 0 8 chr6 166310797 166311140 -22968414 + (GAATG)n Satellite Satellite 2 502 0 945 118 0 0 chr6 166311155 166311324 -22968230 + (GAATG)n Satellite Satellite 2 170 0 1101 106 0 0 chr6 166311335 166311515 -22968039 + (GAATG)n Satellite Satellite 1 180 0 903 140 0 0 chr6 166311528 166311699 -22967855 + (GAATG)n Satellite Satellite 2 172 0 584 153 0 32 chr6 166311711 166311868 -22967686 + (GAATG)n Satellite Satellite 2 153 0 183 42 0 0 chr6 166311910 166311934 -22967620 + (GAATG)n Satellite Satellite 1 24 0 1029 128 0 0 chr6 166311979 166312349 -22967205 + (GAATG)n Satellite Satellite 1 370 0 993 156 0 3 chr6 166312377 166312909 -22966645 + (GAATG)n Satellite Satellite 2 709 0 735 174 0 0 chr6 166312949 166313127 -22966427 + (GAATG)n Satellite Satellite 2 179 0 966 135 0 0 chr6 166313138 166313316 -22966238 + (GAATG)n Satellite Satellite 3 180 0 978 113 0 0 chr6 166313346 166313552 -22966002 + (GAATG)n Satellite Satellite 1 206 0 906 153 0 4 chr6 166313564 166313912 -22965642 + (GAATG)n Satellite Satellite 2 525 0 867 156 0 0 chr6 166313923 166314102 -22965452 + (GAATG)n Satellite Satellite 2 180 0 1155 94 0 0 chr6 166314123 166314303 -22965251 + (GAATG)n Satellite Satellite 1 180 0 1128 125 0 6 chr6 166314319 166314762 -22964792 + (GAATG)n Satellite Satellite 1 616 0 858 152 0 0 chr6 166314778 166315100 -22964454 + (GAATG)n Satellite Satellite 1 322 0 921 116 0 0 chr6 166315131 166315295 -22964259 + (GAATG)n Satellite Satellite 2 165 0 1137 90 0 0 chr6 166315306 166315483 -22964071 + (GAATG)n Satellite Satellite 4 180 0 860 153 0 16 chr6 166315494 166315823 -22963731 + (GAATG)n Satellite Satellite 1 323 0 1083 107 0 0 chr6 166315866 166316044 -22963510 + (GAATG)n Satellite Satellite 3 180 0 1041 146 0 9 chr6 166316056 166316600 -22962954 + (GAATG)n Satellite Satellite 2 716 0 843 156 0 0 chr6 166316631 166316810 -22962744 + (GAATG)n Satellite Satellite 2 180 0 567 156 0 0 chr6 166316912 166317034 -22962520 + (GAATG)n Satellite Satellite 2 123 0 1191 128 0 1 chr6 166317045 166317749 -22961805 + (GAATG)n Satellite Satellite 1 882 0 820 112 0 53 chr6 166317766 166317953 -22961601 + (GAATG)n Satellite Satellite 3 179 0 1125 142 0 3 chr6 166317975 166318445 -22961109 + (GAATG)n Satellite Satellite 1 648 0 1125 106 0 0 chr6 166318445 166318625 -22960929 + (GAATG)n Satellite Satellite 1 180 0 1062 139 0 0 chr6 166318670 166319314 -22960240 + (GAATG)n Satellite Satellite 1 644 0 721 128 0 53 chr6 166319331 166319518 -22960036 + (GAATG)n Satellite Satellite 3 179 0 972 126 0 0 chr6 166319539 166319713 -22959841 + (GAATG)n Satellite Satellite 3 176 0 180 184 0 0 chr6 166319730 166319779 -22959775 + (GAATG)n Satellite Satellite 2 50 0 805 141 0 27 chr6 166319800 166319985 -22959569 + (GAATG)n Satellite Satellite 1 180 0 1008 137 0 6 chr6 166320041 166320569 -22958985 + (GAATG)n Satellite Satellite 1 701 0 780 159 0 0 chr6 166320583 166320759 -22958795 + (GAATG)n Satellite Satellite 2 177 0 1101 111 0 6 chr6 166320775 166321135 -22958419 + (GAATG)n Satellite Satellite 3 536 0 1152 110 0 11 chr6 166321150 166321600 -22957954 + (GAATG)n Satellite Satellite 1 445 0 795 115 0 0 chr6 166321639 166321778 -22957776 + (GAATG)n Satellite Satellite 2 140 0 186 118 0 0 chr6 166321790 166321824 -22957730 + (GAATG)n Satellite Satellite 1 34 0 767 149 6 0 chr6 166321839 166322007 -22957547 + (GAATG)n Satellite Satellite 2 170 0 954 123 0 0 chr6 166322019 166322190 -22957364 + (GAATG)n Satellite Satellite 4 174 0 770 159 0 6 chr6 166322201 166322371 -22957183 + (GAATG)n Satellite Satellite 4 172 0 996 135 0 16 chr6 166322382 166322693 -22956861 + (GAATG)n Satellite Satellite 1 305 0 1035 128 0 0 chr6 166322714 166322998 -22956556 + (GAATG)n Satellite Satellite 1 284 0 939 109 0 0 chr6 166323010 166323175 -22956379 + (GAATG)n Satellite Satellite 5 169 0 949 141 3 8 chr6 166323175 166326414 -22953140 - BSR/Beta Satellite Satellite -4 3224 1 1017 129 6 8 chr6 166326514 166329442 -22950112 - BSR/Beta Satellite Satellite 0 2920 1 252 149 0 0 chr6 166329549 166329596 -22949958 + (CATTC)n Satellite Satellite 1 47 0 744 173 0 0 chr6 166329609 166329788 -22949766 + (CATTC)n Satellite Satellite 1 179 0 1080 134 0 4 chr6 166329804 166330293 -22949261 + (CATTC)n Satellite Satellite 1 487 0 714 175 0 0 chr6 166330307 166330484 -22949070 + (CATTC)n Satellite Satellite 4 180 0 519 201 0 0 chr6 166330495 166330654 -22948900 + (CATTC)n Satellite Satellite 2 160 0 912 133 0 0 chr6 166330669 166330849 -22948705 + (CATTC)n Satellite Satellite 1 180 0 813 152 0 0 chr6 166330882 166331053 -22948501 + (CATTC)n Satellite Satellite 4 174 0 1170 134 2 22 chr6 166331065 166332280 -22947274 + (CATTC)n Satellite Satellite 1 1190 0 1020 148 6 0 chr6 166332292 166332635 -22946919 + (CATTC)n Satellite Satellite 5 346 0 727 146 0 39 chr6 166332653 166332913 -22946641 + (CATTC)n Satellite Satellite 1 249 0 246 81 0 0 chr6 166332924 166332961 -22946593 + (CATTC)n Satellite Satellite 2 38 0 942 140 0 0 chr6 166332974 166333153 -22946401 + (CATTC)n Satellite Satellite 2 180 0 990 177 0 2 chr6 166333171 166333650 -22945904 + (CATTC)n Satellite Satellite 1 478 0 768 158 0 0 chr6 166333661 166333832 -22945722 + (CATTC)n Satellite Satellite 4 174 0 1008 114 0 23 chr6 166333844 166334290 -22945264 + (CATTC)n Satellite Satellite 1 435 0 1131 131 0 0 chr6 166334303 166335045 -22944509 + (CATTC)n Satellite Satellite 1 742 0 1113 131 0 19 chr6 166335058 166335423 -22944131 + (CATTC)n Satellite Satellite 1 359 0 706 150 0 39 chr6 166335443 166335703 -22943851 + (CATTC)n Satellite Satellite 1 249 0 1017 164 0 6 chr6 166335714 166336413 -22943141 + (CATTC)n Satellite Satellite 1 694 0 966 144 3 0 chr6 166336434 166337055 -22942499 + (CATTC)n Satellite Satellite 1 623 0 1254 137 2 18 chr6 166337068 166337706 -22941848 + (CATTC)n Satellite Satellite 1 627 0 857 120 0 22 chr6 166337717 166337946 -22941608 + (CATTC)n Satellite Satellite 1 223 0 951 132 0 0 chr6 166337963 166338191 -22941363 + (CATTC)n Satellite Satellite 1 228 0 983 129 4 0 chr6 166338232 166338525 -22941029 + (CATTC)n Satellite Satellite 1 294 0 1071 134 1 12 chr6 166338586 166339400 -22940154 + (CATTC)n Satellite Satellite 1 804 0 1011 104 0 0 chr6 166339425 166339668 -22939886 + (CATTC)n Satellite Satellite 1 243 0 1125 106 0 0 chr6 166339699 166339879 -22939675 + (CATTC)n Satellite Satellite 1 180 0 989 94 11 11 chr6 166339894 166340074 -22939480 + (CATTC)n Satellite Satellite 1 180 0 183 42 0 0 chr6 166340097 166340121 -22939433 + (CATTC)n Satellite Satellite 4 27 0 939 135 3 17 chr6 166340132 166340496 -22939058 + (CATTC)n Satellite Satellite 1 358 0 942 135 0 0 chr6 166340516 166340694 -22938860 + (CATTC)n Satellite Satellite 3 180 0 1044 119 0 0 chr6 166340716 166340893 -22938661 + (CATTC)n Satellite Satellite 4 180 0 1029 134 4 13 chr6 166340914 166341457 -22938097 + (CATTC)n Satellite Satellite 1 538 0 1191 127 0 3 chr6 166341482 166341842 -22937712 + (CATTC)n Satellite Satellite 1 360 0 236 35 0 0 chr6 166341842 166341871 -22937683 + (CATTA)n Simple_repeat Simple_repeat 1 29 0 1116 123 2 4 chr6 166341883 166342356 -22937198 + (CATTC)n Satellite Satellite 1 472 0 634 179 6 6 chr6 166342383 166342562 -22936992 + (CATTC)n Satellite Satellite 2 180 0 972 124 0 0 chr6 166342576 166342745 -22936809 + (CATTC)n Satellite Satellite 5 173 0 1179 139 2 8 chr6 166342777 166344579 -22934975 + (CATTC)n Satellite Satellite 1 1791 0 882 137 4 4 chr6 166344590 166344859 -22934695 + (CATTC)n Satellite Satellite 1 269 0 913 148 3 3 chr6 166344871 166345239 -22934315 + (CATTC)n Satellite Satellite 1 368 0 660 181 0 0 chr6 166345255 166345421 -22934133 + (CATTC)n Satellite Satellite 2 167 0 941 123 6 0 chr6 166345434 166345613 -22933941 + (CATTC)n Satellite Satellite 1 180 0 771 163 0 0 chr6 166345640 166345942 -22933612 + (CATTC)n Satellite Satellite 1 302 0 981 117 0 0 chr6 166345954 166346203 -22933351 + (CATTC)n Satellite Satellite 1 249 0 673 175 5 5 chr6 166346214 166346440 -22933114 + (CATTC)n Satellite Satellite 1 226 0 1167 114 0 12 chr6 166346455 166346949 -22932605 + (CATTC)n Satellite Satellite 1 488 0 1086 127 0 2 chr6 166346960 166347428 -22932126 + (CATTC)n Satellite Satellite 1 467 0 1155 109 0 0 chr6 166347443 166347808 -22931746 + (CATTC)n Satellite Satellite 1 365 0 1146 87 0 0 chr6 166347819 166347992 -22931562 + (CATTC)n Satellite Satellite 2 174 0 562 95 9 9 chr6 166348010 166348115 -22931439 + (CATTC)n Satellite Satellite 3 107 0 260 200 22 111 chr6 166348116 166348251 -22931303 - LSAU Satellite Satellite -375 123 1 1010 127 4 8 chr6 166348438 166353450 -22926104 + BSR/Beta Satellite Satellite 1 4989 -50 222 37 0 0 chr6 166353550 166353577 -22925977 + (CATTC)n Satellite Satellite 3 29 0 723 179 0 0 chr6 166353594 166353773 -22925781 + (CATTC)n Satellite Satellite 2 180 0 970 117 6 6 chr6 166353813 166353993 -22925561 + (CATTC)n Satellite Satellite 1 180 0 1038 88 0 5 chr6 166354004 166354214 -22925340 + (CATTC)n Satellite Satellite 1 208 0 354 159 0 0 chr6 166354225 166354294 -22925260 + (CATTC)n Satellite Satellite 2 70 0 765 168 0 0 chr6 166354305 166354484 -22925070 + (CATTC)n Satellite Satellite 2 180 0 869 124 0 27 chr6 166354529 166354714 -22924840 + (CATTC)n Satellite Satellite 1 180 0 1014 116 0 4 chr6 166354734 166354964 -22924590 + (CATTC)n Satellite Satellite 1 228 0 857 140 6 0 chr6 166354985 166355163 -22924391 + (CATTC)n Satellite Satellite 2 180 0 999 134 0 0 chr6 166355199 166355540 -22924014 + (CATTC)n Satellite Satellite 1 341 0 960 128 0 0 chr6 166355579 166355758 -22923796 + (CATTC)n Satellite Satellite 2 180 0 948 165 3 3 chr6 166355769 166356149 -22923405 + (CATTC)n Satellite Satellite 1 380 0 723 183 0 0 chr6 166356162 166356342 -22923212 + (CATTC)n Satellite Satellite 1 180 0 180 184 0 0 chr6 166356368 166356417 -22923137 + (CATTC)n Satellite Satellite 2 50 0 1038 140 1 3 chr6 166356442 166357324 -22922230 + (CATTC)n Satellite Satellite 1 879 0 960 141 1 3 chr6 166357336 166358072 -22921482 + (CATTC)n Satellite Satellite 1 734 0 750 161 0 0 chr6 166358083 166358257 -22921297 + (CATTC)n Satellite Satellite 4 177 0 1050 112 0 0 chr6 166358277 166358455 -22921099 + (CATTC)n Satellite Satellite 3 180 0 1005 160 0 6 chr6 166358471 166358825 -22920729 + (CATTC)n Satellite Satellite 2 353 0 864 111 0 0 chr6 166358856 166359000 -22920554 + (CATTC)n Satellite Satellite 2 145 0 1101 106 0 0 chr6 166359015 166359195 -22920359 + (CATTC)n Satellite Satellite 1 180 0 896 120 0 27 chr6 166359221 166359404 -22920150 + (CATTC)n Satellite Satellite 2 179 0 849 171 0 0 chr6 166359416 166359745 -22919809 + (CATTC)n Satellite Satellite 1 329 0 426 146 0 0 chr6 166359765 166359847 -22919707 + (CATTC)n Satellite Satellite 1 82 0 765 153 0 0 chr6 166359885 166360042 -22919512 + (CATTC)n Satellite Satellite 1 157 0 723 174 0 0 chr6 166360097 166360275 -22919279 + (CATTC)n Satellite Satellite 3 180 0 893 131 6 0 chr6 166360296 166360472 -22919082 + (CATTC)n Satellite Satellite 2 178 0 906 140 0 0 chr6 166360489 166360668 -22918886 + (CATTC)n Satellite Satellite 1 179 0 936 136 0 0 chr6 166360682 166360858 -22918696 + (CATTC)n Satellite Satellite 4 179 0 738 184 0 0 chr6 166360870 166361049 -22918505 + (CATTC)n Satellite Satellite 2 180 0 924 143 0 9 chr6 166361063 166361593 -22917961 + (CATTC)n Satellite Satellite 1 525 0 930 144 0 0 chr6 166361609 166361789 -22917765 + (CATTC)n Satellite Satellite 1 180 0 1092 101 0 0 chr6 166361800 166361978 -22917576 + (CATTC)n Satellite Satellite 2 179 0 753 172 0 0 chr6 166361989 166362169 -22917385 + (CATTC)n Satellite Satellite 1 180 0 993 123 0 0 chr6 166362210 166362389 -22917165 + (CATTC)n Satellite Satellite 2 180 0 189 159 0 0 chr6 166362400 166362444 -22917110 + (CATTC)n Satellite Satellite 2 45 0 1095 132 0 1 chr6 166362460 166363289 -22916265 + (CATTC)n Satellite Satellite 1 827 0 1092 154 0 4 chr6 166363300 166363753 -22915801 + (CATTC)n Satellite Satellite 1 451 0 926 107 0 22 chr6 166363765 166363999 -22915555 + (CATTC)n Satellite Satellite 1 228 0 405 151 0 0 chr6 166364022 166364108 -22915446 + (CATTC)n Satellite Satellite 4 89 0 969 123 0 0 chr6 166364130 166364309 -22915245 + (CATTC)n Satellite Satellite 2 180 0 1155 139 0 8 chr6 166364322 166365204 -22914350 + (CATTC)n Satellite Satellite 1 875 0 1224 45 0 0 chr6 166365333 166365488 -22914066 + (GAATG)n Satellite Satellite 2 156 0 944 148 1 11 chr6 166365519 166366332 -22913222 + (GAATG)n Satellite Satellite 1 983 0 921 147 0 0 chr6 166366379 166366662 -22912892 + (GAATG)n Satellite Satellite 2 449 0 939 145 0 1 chr6 166366674 166367217 -22912337 + (GAATG)n Satellite Satellite 1 721 0 939 156 0 2 chr6 166367228 166367560 -22911994 + (GAATG)n Satellite Satellite 1 509 0 927 139 0 0 chr6 166367578 166367758 -22911796 + (GAATG)n Satellite Satellite 1 180 0 225 196 0 0 chr6 166367771 166367817 -22911737 + (GAATG)n Satellite Satellite 2 47 0 1155 108 0 3 chr6 166367829 166368422 -22911132 + (GAATG)n Satellite Satellite 2 754 0 1109 154 1 2 chr6 166368453 166369412 -22910142 + (GAATG)n Satellite Satellite 2 1137 0 270 221 0 0 chr6 166369427 166369522 -22910032 + (GAATG)n Satellite Satellite 1 95 0 942 149 1 1 chr6 166369537 166370056 -22909498 + (GAATG)n Satellite Satellite 2 685 0 938 114 0 27 chr6 166370077 166370261 -22909293 + (GAATG)n Satellite Satellite 2 180 0 987 154 0 10 chr6 166370272 166370731 -22908823 + (GAATG)n Satellite Satellite 2 626 0 957 153 0 9 chr6 166370745 166371091 -22908463 + (GAATG)n Satellite Satellite 4 517 0 780 178 0 0 chr6 166371102 166371282 -22908272 + (GAATG)n Satellite Satellite 1 180 0 948 155 0 0 chr6 166371322 166371801 -22907753 + (GAATG)n Satellite Satellite 1 479 0 960 137 0 15 chr6 166371812 166372071 -22907483 + (GAATG)n Satellite Satellite 2 426 0 930 135 0 0 chr6 166372083 166372261 -22907293 + (GAATG)n Satellite Satellite 2 179 0 600 163 0 0 chr6 166372275 166372404 -22907150 + (GAATG)n Satellite Satellite 4 132 0 1092 103 0 0 chr6 166372415 166372589 -22906965 + (GAATG)n Satellite Satellite 4 177 0 189 159 0 0 chr6 166372602 166372646 -22906908 + (GAATG)n Satellite Satellite 2 45 0 864 156 0 0 chr6 166372657 166372837 -22906717 + (GAATG)n Satellite Satellite 1 180 0 1085 139 0 8 chr6 166372852 166373237 -22906317 + (GAATG)n Satellite Satellite 1 560 0 1085 100 0 6 chr6 166373237 166373417 -22906137 + (GAATG)n Satellite Satellite 2 180 0 981 123 0 0 chr6 166373793 166373972 -22905582 + (GAATG)n Satellite Satellite 2 180 0 874 126 0 27 chr6 166373983 166374166 -22905388 + (GAATG)n Satellite Satellite 3 180 0 785 137 0 27 chr6 166374193 166374376 -22905178 + (GAATG)n Satellite Satellite 3 180 0 924 141 0 0 chr6 166374402 166374579 -22904975 + (GAATG)n Satellite Satellite 4 180 0 257 227 9 0 chr6 166374590 166374700 -22904854 + (GAATG)n Satellite Satellite 2 112 0 999 101 0 0 chr6 166374716 166374875 -22904679 + (GAATG)n Satellite Satellite 2 160 0 614 138 8 0 chr6 166374890 166375013 -22904541 + (GAATG)n Satellite Satellite 3 126 0 867 147 0 0 chr6 166375030 166375207 -22904347 + (GAATG)n Satellite Satellite 4 180 0 303 85 0 0 chr6 166375218 166375265 -22904289 + (GAATG)n Satellite Satellite 1 47 0 908 149 3 0 chr6 166375294 166375623 -22903931 + (GAATG)n Satellite Satellite 1 330 0 972 137 0 7 chr6 166375664 166376493 -22903061 + (GAATG)n Satellite Satellite 2 1001 0 582 160 0 0 chr6 166376506 166376637 -22902917 + (GAATG)n Satellite Satellite 2 132 0 966 135 0 0 chr6 166376653 166376831 -22902723 + (GAATG)n Satellite Satellite 3 180 0 840 156 0 0 chr6 166376858 166377038 -22902516 + (GAATG)n Satellite Satellite 1 180 0 908 133 6 13 chr6 166377053 166377415 -22902139 + (GAATG)n Satellite Satellite 2 536 0 963 124 0 0 chr6 166377468 166377645 -22901909 + (GAATG)n Satellite Satellite 2 178 0 848 142 0 14 chr6 166377656 166378025 -22901529 + (GAATG)n Satellite Satellite 1 363 0 972 133 0 0 chr6 166378051 166378231 -22901323 + (GAATG)n Satellite Satellite 1 180 0 939 143 0 0 chr6 166378246 166378476 -22901078 + (GAATG)n Satellite Satellite 1 230 0 1080 143 0 0 chr6 166378491 166379100 -22900454 + (GAATG)n Satellite Satellite 1 609 0 741 167 0 0 chr6 166379141 166379360 -22900194 + (GAATG)n Satellite Satellite 1 219 0 894 131 0 0 chr6 166379372 166379540 -22900014 + (GAATG)n Satellite Satellite 2 169 0 1119 157 0 3 chr6 166379551 166380075 -22899479 + (GAATG)n Satellite Satellite 2 700 0 864 156 0 0 chr6 166380101 166380281 -22899273 + (GAATG)n Satellite Satellite 1 180 0 930 150 0 10 chr6 166380312 166380816 -22898738 + (GAATG)n Satellite Satellite 1 499 0 1371 84 0 2 chr6 166380867 166381310 -22898244 + (GAATG)n Satellite Satellite 1 622 0 909 145 0 0 chr6 166381321 166381500 -22898054 + (GAATG)n Satellite Satellite 2 180 0 1059 136 0 10 chr6 166381511 166381918 -22897636 + (GAATG)n Satellite Satellite 1 581 0 873 151 0 0 chr6 166381931 166382155 -22897399 + (GAATG)n Satellite Satellite 1 224 0 1065 106 0 0 chr6 166382171 166382351 -22897203 + (GAATG)n Satellite Satellite 1 180 0 1160 135 2 8 chr6 166382384 166383019 -22896535 + (GAATG)n Satellite Satellite 2 808 0 183 42 0 0 chr6 166383030 166383054 -22896500 + (GAATG)n Satellite Satellite 2 25 0 1200 140 0 7 chr6 166383075 166383834 -22895720 + (GAATG)n Satellite Satellite 1 753 0 939 136 0 0 chr6 166383875 166384208 -22895346 + (GAATG)n Satellite Satellite 1 333 0 1089 101 0 0 chr6 166384220 166384399 -22895155 + (GAATG)n Satellite Satellite 1 179 0 891 152 0 0 chr6 166384420 166384961 -22894593 + (GAATG)n Satellite Satellite 1 541 0 492 174 0 0 chr6 166384972 166385093 -22894461 + (GAATG)n Satellite Satellite 2 122 0 933 145 0 0 chr6 166385109 166385288 -22894266 + (GAATG)n Satellite Satellite 2 180 0 903 145 0 0 chr6 166385302 166385554 -22894000 + (GAATG)n Satellite Satellite 1 252 0 990 140 2 0 chr6 166385583 166386176 -22893378 + (GAATG)n Satellite Satellite 1 594 0 882 131 3 14 chr6 166386188 166386548 -22893006 + (GAATG)n Satellite Satellite 1 355 0 879 142 0 0 chr6 166386589 166386765 -22892789 + (GAATG)n Satellite Satellite 2 177 0 993 128 1 4 chr6 166386786 166387365 -22892189 + (GAATG)n Satellite Satellite 4 750 0 914 119 0 27 chr6 166387377 166387562 -22891992 + (GAATG)n Satellite Satellite 1 180 0 720 171 0 0 chr6 166387607 166387826 -22891728 + (GAATG)n Satellite Satellite 1 219 0 909 90 5 53 chr6 166387838 166388026 -22891528 + (GAATG)n Satellite Satellite 1 179 0 1296 67 0 0 chr6 166388051 166388231 -22891323 + (GAATG)n Satellite Satellite 1 180 0 972 128 0 0 chr6 166388276 166388455 -22891099 + (GAATG)n Satellite Satellite 2 180 0 918 158 0 0 chr6 166388466 166389280 -22890274 + (GAATG)n Satellite Satellite 1 814 0 303 136 0 0 chr6 166389292 166389351 -22890203 + (GAATG)n Satellite Satellite 1 59 0 905 120 0 27 chr6 166389376 166389560 -22889994 + (GAATG)n Satellite Satellite 2 180 0 1092 96 0 0 chr6 166389579 166389756 -22889798 + (GAATG)n Satellite Satellite 1 177 0 909 145 0 0 chr6 166389777 166389956 -22889598 + (GAATG)n Satellite Satellite 1 179 0 657 139 0 0 chr6 166389971 166390093 -22889461 + (GAATG)n Satellite Satellite 4 125 0 1074 72 0 0 chr6 166390107 166390260 -22889294 + (GAATG)n Satellite Satellite 2 154 0 792 162 0 0 chr6 166390275 166390442 -22889112 + (GAATG)n Satellite Satellite 4 170 0 906 144 0 0 chr6 166390460 166390640 -22888914 + (GAATG)n Satellite Satellite 1 180 0 375 73 0 0 chr6 166390655 166390710 -22888844 + (GAATG)n Satellite Satellite 1 55 0 909 133 5 0 chr6 166390739 166391157 -22888397 + (GAATG)n Satellite Satellite 1 420 0 719 323 98 18 chr6 166491761 166491926 -22787628 - L2 LINE L2 -32 3281 3131 2218 138 0 0 chr6 166491926 166492238 -22787316 + AluSx SINE Alu 1 312 0 719 323 98 18 chr6 166492238 166492670 -22786884 - L2 LINE L2 -182 3131 2625 192 333 10 31 chr6 166492912 166493008 -22786546 + MIR SINE MIR 44 137 -71 2183 113 3 0 chr6 166493772 166494065 -22785489 + AluSp SINE Alu 1 294 -19 245 250 0 45 chr6 166494127 166494215 -22785339 + GA-rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr6 166494563 166494584 -22784970 + AT_rich Low_complexity Low_complexity 1 21 0 1703 183 7 3 chr6 166495265 166495565 -22783989 - AluJo SINE Alu -11 301 1 638 323 39 4 chr6 166496460 166496692 -22782862 + MIR SINE MIR 7 246 -16 2385 101 0 0 chr6 166497519 166497826 -22781728 - AluSx SINE Alu -5 307 1 2093 262 84 11 chr6 166498119 166498786 -22780768 - L1ME3A LINE L1 -20 6150 5435 3784 239 49 36 chr6 166498815 166499780 -22779774 - L1ME2 LINE L1 -9 6155 5204 2010 156 0 3 chr6 166499780 166500081 -22779473 - AluSx SINE Alu -12 300 1 3784 239 49 36 chr6 166500081 166500873 -22778681 - L1ME2 LINE L1 -960 5204 4361 1705 152 0 74 chr6 166500873 166501182 -22778372 - AluJb SINE Alu -22 290 5 3784 239 49 36 chr6 166501182 166501635 -22777919 - L1ME2 LINE L1 -1803 4361 3915 249 193 12 48 chr6 166502484 166502567 -22776987 + T-rich Low_complexity Low_complexity 1 80 0 379 249 94 50 chr6 166503080 166503261 -22776293 - L2 LINE L2 -5 3308 3120 397 274 48 0 chr6 166503430 166503554 -22776000 + MIR SINE MIR 104 233 -29 2319 110 0 0 chr6 166503770 166504069 -22775485 - AluSx SINE Alu -13 299 1 188 365 0 14 chr6 166505913 166505987 -22773567 - MIR SINE MIR -112 96 24 1080 122 0 0 chr6 166507303 166507442 -22772112 + AluSq/x SINE Alu 1 139 -174 2081 124 13 83 chr6 166507543 166507819 -22771735 - MLT1B LTR MaLR -30 360 117 2217 112 0 10 chr6 166507819 166508114 -22771440 - AluSq SINE Alu -21 292 1 2081 124 13 83 chr6 166508114 166508224 -22771330 - MLT1B LTR MaLR -273 117 1 306 73 0 0 chr6 166509122 166509163 -22770391 + (TG)n Simple_repeat Simple_repeat 2 42 0 450 0 0 0 chr6 166510849 166510899 -22768655 + (CA)n Simple_repeat Simple_repeat 2 51 0 244 263 66 0 chr6 166511635 166511711 -22767843 + L1ME LINE L1 5738 5818 -303 2371 82 0 3 chr6 166511789 166512080 -22767474 - AluSc SINE Alu -19 290 1 1776 292 113 16 chr6 166512487 166513354 -22766200 - L2 LINE L2 -517 2797 1847 2164 117 3 19 chr6 166514628 166514945 -22764609 - AluSx SINE Alu 0 312 1 264 288 0 0 chr6 166517548 166517628 -22761926 + MIR SINE MIR 53 132 -130 637 253 26 19 chr6 166517888 166518042 -22761512 + MER63A DNA MER1_type 55 209 -1 858 219 10 86 chr6 166518157 166518449 -22761105 - MER46C DNA MER2_type -64 274 5 335 342 95 22 chr6 166518613 166518835 -22760719 + MIR SINE MIR 10 247 -15 1626 136 80 74 chr6 166518876 166519065 -22760489 + MER2 DNA MER2_type 6 199 -146 1610 148 77 54 chr6 166519065 166519363 -22760191 + AluJb SINE Alu 1 305 -7 1626 136 80 74 chr6 166519363 166519511 -22760043 + MER2 DNA MER2_type 199 345 0 236 204 0 20 chr6 166519982 166520031 -22759523 + Charlie8 DNA MER1_type 2370 2417 0 377 236 49 49 chr6 166520077 166520200 -22759354 - MER20B DNA MER1_type -595 188 66 294 274 94 21 chr6 166521759 166521923 -22757631 + MIR SINE MIR 20 192 -70 517 113 27 0 chr6 166521949 166522033 -22757521 - L1PA10 LINE L1 -26 6129 6041 713 243 30 0 chr6 166522251 166522420 -22757134 + LTR33A LTR ERVL 348 521 -2 195 267 46 122 chr6 166522573 166522704 -22756850 - L2 LINE L2 -1 3312 3192 2264 98 3 3 chr6 166523558 166523876 -22755678 - AluSq SINE Alu 0 313 1 23 33 0 0 chr6 166523880 166523910 -22755644 + AT_rich Low_complexity Low_complexity 1 30 0 183 156 0 0 chr6 166524259 166524291 -22755263 + (CAT)n Simple_repeat Simple_repeat 1 32 0 372 43 0 0 chr6 166525484 166525530 -22754024 + (TA)n Simple_repeat Simple_repeat 2 47 0 2281 98 3 3 chr6 166525530 166525825 -22753729 - AluSx SINE Alu -17 295 1 268 272 44 53 chr6 166525831 166525945 -22753609 - L2 LINE L2 -19 3294 3182 4573 116 113 25 chr6 166525977 166526298 -22753256 - Tigger3b DNA MER2_type -1797 1231 940 218 81 27 0 chr6 166526298 166526335 -22753219 + (TGAG)n Simple_repeat Simple_repeat 1 38 0 4573 116 113 25 chr6 166526335 166526827 -22752727 - Tigger3b DNA MER2_type -2088 940 346 233 58 77 0 chr6 166526850 166526902 -22752652 + (TA)n Simple_repeat Simple_repeat 2 57 0 243 239 9 80 chr6 166526944 166527057 -22752497 - L2 LINE L2 -248 3024 2920 1376 177 181 0 chr6 166527302 166527556 -22751998 - AluJb SINE Alu -2 300 1 237 350 11 45 chr6 166527600 166527777 -22751777 + MIR SINE MIR 46 216 -46 245 225 0 108 chr6 166528021 166528070 -22751484 + MIR SINE MIR 34 66 -196 1559 188 139 87 chr6 166528070 166528135 -22751419 - MLT1E2 LTR MaLR 0 626 566 2330 102 3 0 chr6 166528135 166528439 -22751115 + AluSp SINE Alu 1 305 -8 1559 188 139 87 chr6 166528439 166528968 -22750586 - MLT1E2 LTR MaLR -60 566 1 245 225 0 108 chr6 166528968 166529029 -22750525 + MIR SINE MIR 66 132 -130 327 25 0 0 chr6 166529417 166529457 -22750097 + (CA)n Simple_repeat Simple_repeat 1 40 0 225 0 0 0 chr6 166529484 166529509 -22750045 + (TGG)n Simple_repeat Simple_repeat 3 27 0 2357 95 3 0 chr6 166530526 166530821 -22748733 + AluSp SINE Alu 1 296 -17 187 274 86 43 chr6 166531183 166531300 -22748254 - MIR SINE MIR -1 261 140 2069 127 7 3 chr6 166532464 166532764 -22746790 + AluSg SINE Alu 1 301 -9 2243 121 0 0 chr6 166533278 166533584 -22745970 - AluSx SINE Alu -6 306 1 1903 103 0 27 chr6 166534239 166534501 -22745053 - AluSx SINE Alu -57 255 1 243 359 57 0 chr6 166535562 166535668 -22743886 - L2 LINE L2 -31 3282 3171 290 317 0 0 chr6 166535984 166536066 -22743488 + (TG)n Simple_repeat Simple_repeat 1 82 0 752 274 63 14 chr6 166536455 166536678 -22742876 + MIR SINE MIR 15 248 -14 2161 135 0 6 chr6 166536689 166537000 -22742554 - AluSx SINE Alu -3 309 1 1721 149 3 21 chr6 166538369 166538658 -22740896 + AluJo SINE Alu 1 284 -28 753 210 45 40 chr6 166539311 166539424 -22740130 - MIR SINE MIR 0 262 146 216 0 0 0 chr6 166539424 166539448 -22740106 + (CAT)n Simple_repeat Simple_repeat 2 25 0 753 210 45 40 chr6 166539448 166539534 -22740020 - MIR SINE MIR -116 146 62 26 30 0 0 chr6 166540219 166540252 -22739302 + GC_rich Low_complexity Low_complexity 1 33 0 340 256 138 100 chr6 166540307 166540678 -22738876 - L1M2 LINE L1 -5896 953 569 206 338 110 44 chr6 166541713 166541849 -22737705 + MIR3 SINE MIR 40 184 -24 209 253 35 69 chr6 166542728 166542815 -22736739 - MIR3 SINE MIR -14 194 111 1939 42 8 4 chr6 166543280 166543516 -22736038 + AluY SINE Alu 74 310 -1 691 174 168 58 chr6 166544754 166544944 -22734610 - MER58C DNA MER1_type -1 214 4 429 280 220 18 chr6 166545704 166545922 -22733632 + MIR SINE MIR 1 262 0 198 200 18 154 chr6 166546004 166546114 -22733440 - L2 LINE L2 -214 3099 3005 326 242 169 0 chr6 166546185 166546309 -22733245 - MER104 DNA Tc2 -31 149 5 180 291 194 0 chr6 166548678 166548781 -22730773 + MIR SINE MIR 136 258 -4 625 295 112 24 chr6 166549100 166549630 -22729924 - L2 LINE L2 -176 3137 2551 2093 130 30 0 chr6 166549931 166550231 -22729323 - AluSx SINE Alu -3 309 1 200 200 18 0 chr6 166550438 166550493 -22729061 + GA-rich Low_complexity Low_complexity 5 60 0 2415 94 0 0 chr6 166551359 166551666 -22727888 + AluSx SINE Alu 1 307 -5 2172 128 0 3 chr6 166552150 166552462 -22727092 - AluSq SINE Alu -2 311 1 1081 262 152 24 chr6 166552569 166553302 -22726252 + L2 LINE L2 2474 3312 -1 205 284 95 11 chr6 166554213 166554308 -22725246 + MIR SINE MIR 125 227 -35 209 200 0 0 chr6 166554505 166554545 -22725009 + CT-rich Low_complexity Low_complexity 2 41 0 734 248 48 10 chr6 166555718 166555924 -22723630 - MIR SINE MIR -17 245 32 240 261 174 36 chr6 166555960 166556098 -22723456 - MLT1J LTR MaLR -22 489 333 2692 196 109 20 chr6 166557754 166558599 -22720955 + MER63 DNA MER1_type 6 1037 -24 1402 189 18 32 chr6 166558652 166558933 -22720621 + AluJo SINE Alu 27 303 -9 2132 106 0 25 chr6 166561091 166561411 -22718143 + AluSp SINE Alu 1 312 -1 229 232 49 37 chr6 166562849 166562931 -22716623 - HsTC2 DNA Tc2 -83 1815 15 516 183 96 0 chr6 166564092 166564196 -22715358 - MER81 DNA DNA 0 114 1 217 167 21 0 chr6 166564493 166564541 -22715013 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 504 247 106 68 chr6 166564542 166564882 -22714672 - HAL1 LINE L1 -752 1755 1403 1072 151 49 8 chr6 166566470 166566677 -22712877 - L1MA5A LINE L1 -79 6225 6011 620 294 18 18 chr6 166567052 166567222 -22712332 - MIR3 SINE MIR -21 187 18 194 319 221 24 chr6 166567346 166567897 -22711657 + L2 LINE L2 1276 1935 -1379 259 250 59 15 chr6 166567903 166567971 -22711583 - L2 LINE L2 -2 3270 3200 201 121 0 0 chr6 166569009 166569042 -22710512 + (A)n Simple_repeat Simple_repeat 1 33 0 284 324 102 0 chr6 166569750 166569858 -22709696 + L2 LINE L2 3146 3264 -8 187 225 28 84 chr6 166570009 166570080 -22709474 + L2 LINE L2 3242 3308 -5 214 241 76 38 chr6 166570827 166570906 -22708648 + L2 LINE L2 3230 3311 -2 2166 119 10 13 chr6 166571451 166571762 -22707792 - AluSg SINE Alu 0 310 1 1298 273 131 30 chr6 166571897 166573303 -22706251 + L1ME3 LINE L1 4407 5949 -213 355 324 111 40 chr6 166573316 166573541 -22706013 - MLT1K LTR MaLR -187 401 161 23 0 0 0 chr6 166576477 166576500 -22703054 + AT_rich Low_complexity Low_complexity 1 23 0 252 277 27 36 chr6 166576518 166576630 -22702924 - HAL1b LINE L1 -641 707 597 1150 60 0 0 chr6 166576727 166576860 -22702694 + AluSq/x SINE Alu 1 133 -180 2426 68 0 3 chr6 166576862 166577169 -22702385 + AluY SINE Alu 1 306 -5 237 65 0 0 chr6 166577191 166577222 -22702332 + (A)n Simple_repeat Simple_repeat 1 31 0 1315 150 39 9 chr6 166578052 166578285 -22701269 - Tigger7 DNA MER2_type -1 2490 2251 5313 63 6 17 chr6 166578823 166579197 -22700357 - L1PA7 LINE L1 0 6154 5788 2496 84 0 0 chr6 166579197 166579506 -22700048 - AluY SINE Alu -2 309 1 5313 63 6 17 chr6 166579506 166579782 -22699772 - L1PA7 LINE L1 -366 5788 5511 1726 162 10 27 chr6 166581175 166581472 -22698082 - AluJo SINE Alu -20 292 1 1053 202 91 20 chr6 166581556 166581809 -22697745 + ORSL DNA AcHobo 3 273 -2 2345 91 10 0 chr6 166582183 166582490 -22697064 - AluSq SINE Alu -1 312 3 359 282 100 8 chr6 166583406 166583647 -22695907 - L1M4 LINE L1 -3432 2714 2452 189 322 113 9 chr6 166584901 166585016 -22694538 - MIR SINE MIR -61 201 75 228 253 53 84 chr6 166585385 166585480 -22694074 + MIR SINE MIR 20 111 -151 993 120 0 0 chr6 166586080 166586213 -22693341 - AluSq/x SINE Alu -180 133 1 2032 103 33 0 chr6 166588415 166588708 -22690846 - AluSg SINE Alu 0 302 1 2301 105 0 0 chr6 166589559 166589854 -22689700 - AluSg SINE Alu -14 296 2 418 273 30 23 chr6 166590041 166590173 -22689381 - MLT1L LTR MaLR -114 501 369 2297 97 0 3 chr6 166591363 166591663 -22687891 + AluSg SINE Alu 12 310 0 296 306 35 49 chr6 166592593 166592737 -22686817 - MIR3 SINE MIR -41 167 26 2397 61 10 3 chr6 166592766 166593061 -22686493 - AluY SINE Alu -14 297 1 201 39 0 0 chr6 166593093 166593119 -22686435 + (TG)n Simple_repeat Simple_repeat 2 27 0 2428 75 0 7 chr6 166595593 166595900 -22683654 - AluSq SINE Alu -8 305 1 3666 128 60 3 chr6 166596788 166597091 -22682463 - L1PB1 LINE L1 -33 6118 5834 207 0 0 0 chr6 166597091 166597114 -22682440 + (TA)n Simple_repeat Simple_repeat 1 23 0 3666 128 60 3 chr6 166597114 166597396 -22682158 - L1PB1 LINE L1 -317 5834 5500 323 281 70 43 chr6 166597521 166597706 -22681848 - L2 LINE L2 -6 3307 3118 706 322 72 31 chr6 166597729 166598117 -22681437 - L2 LINE L2 -347 2967 2564 372 160 43 11 chr6 166599588 166599682 -22679872 + CT-rich Low_complexity Low_complexity 3 99 0 1662 169 0 14 chr6 166599685 166599963 -22679591 - AluJb SINE Alu -34 278 5 530 29 15 0 chr6 166600618 166600686 -22678868 + (TC)n Simple_repeat Simple_repeat 1 69 0 2153 115 0 0 chr6 166600706 166600985 -22678569 - AluSx SINE Alu -33 279 1 352 310 85 8 chr6 166601267 166601396 -22678158 - MIR SINE MIR -123 139 1 454 108 0 0 chr6 166601584 166601649 -22677905 - Alu SINE Alu -13 299 235 1054 122 0 0 chr6 166601650 166601789 -22677765 - AluSq/x SINE Alu -174 139 1 325 308 101 24 chr6 166602380 166602549 -22677005 + L1MC/D LINE L1 5443 5624 -2184 341 286 108 106 chr6 166602766 166603286 -22676268 + L2 LINE L2 2341 2861 -453 219 139 0 0 chr6 166603288 166603324 -22676230 + (CA)n Simple_repeat Simple_repeat 2 37 0 238 236 7 193 chr6 166603375 166603515 -22676039 + L2 LINE L2 2929 3042 -230 1454 186 0 27 chr6 166603621 166603907 -22675647 + AluJo SINE Alu 32 310 0 1220 160 185 16 chr6 166603997 166604066 -22675488 - L1MA9 LINE L1 -1 6311 6255 378 0 0 0 chr6 166604066 166604108 -22675446 + (TA)n Simple_repeat Simple_repeat 2 43 0 1220 160 185 16 chr6 166604108 166604311 -22675243 - L1MA9 LINE L1 -57 6255 5987 332 273 0 77 chr6 166605633 166605776 -22673778 - L2 LINE L2 0 3313 3182 559 340 135 8 chr6 166606173 166606543 -22673011 - L2 LINE L2 -675 2639 2223 463 302 104 33 chr6 166606544 166606938 -22672616 - L2 LINE L2 -1222 2092 1671 1965 111 57 0 chr6 166607244 166607524 -22672030 + AluSc SINE Alu 1 296 -13 201 240 20 0 chr6 166613810 166613860 -22665694 - L2 LINE L2 -9 3304 3254 324 329 35 21 chr6 166614170 166614313 -22665241 - MIR3 SINE MIR -45 163 19 2120 125 0 37 chr6 166614316 166614637 -22664917 - AluSx SINE Alu -3 309 1 472 126 35 0 chr6 166614768 166614855 -22664699 - L1MB7 LINE L1 0 6184 6095 1635 175 59 51 chr6 166614866 166615238 -22664316 - L1MB4 LINE L1 -1 6179 5805 23 33 0 0 chr6 166615344 166615374 -22664180 + AT_rich Low_complexity Low_complexity 1 30 0 186 371 0 76 chr6 166615414 166615519 -22664035 + L2 LINE L2 3157 3253 -19 2220 94 30 3 chr6 166615585 166615883 -22663671 + AluSq SINE Alu 1 306 -7 687 144 0 25 chr6 166616220 166616338 -22663216 - L1PB2 LINE L1 -3 6148 6034 387 198 125 10 chr6 166617100 166617196 -22662358 - L1MB4 LINE L1 -269 5911 5805 226 147 0 0 chr6 166618454 166618488 -22661066 - L2 LINE L2 -8 3264 3231 1945 100 0 8 chr6 166619061 166619321 -22660233 + AluSx SINE Alu 52 309 -3 907 241 35 61 chr6 166620209 166620422 -22659132 + MIR SINE MIR 5 211 -51 2206 120 10 0 chr6 166620422 166620730 -22658824 + AluSq SINE Alu 1 311 -2 907 241 35 61 chr6 166620730 166620777 -22658777 + MIR SINE MIR 211 258 -4 386 333 128 0 chr6 166621540 166621696 -22657858 + MIR SINE MIR 57 232 -30 2086 127 37 0 chr6 166622831 166623131 -22656423 + AluSx SINE Alu 1 311 -1 1753 130 62 19 chr6 166624045 166624367 -22655187 - MER46B DNA MER2_type -21 215 5 674 208 42 83 chr6 166625072 166625264 -22654290 + L1MD2 LINE L1 6162 6345 -14 201 273 65 0 chr6 166625617 166625694 -22653860 - MIR SINE MIR -19 243 162 713 250 51 0 chr6 166626307 166626483 -22653071 + MER5A DNA MER1_type 1 185 -4 479 291 127 27 chr6 166626645 166626865 -22652689 + MIR SINE MIR 2 243 -19 2078 148 0 0 chr6 166627044 166627341 -22652213 + AluSx SINE Alu 1 297 -15 450 0 0 0 chr6 166627424 166627474 -22652080 + (TA)n Simple_repeat Simple_repeat 1 50 0 1771 44 5 0 chr6 166627474 166627678 -22651876 - L1PA5 LINE L1 -13 6141 5937 2290 100 0 0 chr6 166628196 166628487 -22651067 + AluSg SINE Alu 1 291 -19 306 0 0 0 chr6 166628564 166628598 -22650956 + (TG)n Simple_repeat Simple_repeat 2 35 0 2236 108 20 0 chr6 166629331 166629626 -22649928 + AluSx SINE Alu 1 301 -11 214 254 127 48 chr6 166629748 166629874 -22649680 - MER5B DNA MER1_type 0 178 43 206 259 161 62 chr6 166630573 166630685 -22648869 - MER5B DNA MER1_type 0 178 56 1607 181 54 57 chr6 166630717 166631104 -22648450 - MLT1B LTR MaLR -4 386 1 372 41 0 0 chr6 166632216 166632265 -22647289 + AluSp/q SINE Alu 250 298 -5 2163 156 25 23 chr6 166632266 166632663 -22646891 - L1MB3 LINE L1 -55 6128 5731 23 33 0 0 chr6 166632761 166632791 -22646763 + AT_rich Low_complexity Low_complexity 1 30 0 245 318 30 0 chr6 166632795 166632861 -22646693 + L2 LINE L2 3201 3268 -4 186 286 20 0 chr6 166632881 166632930 -22646624 - MIR SINE MIR -67 141 92 477 278 56 35 chr6 166632937 166632969 -22646585 + MIR SINE MIR 55 85 -177 2193 88 0 26 chr6 166632969 166633275 -22646279 - AluSx SINE Alu -9 303 6 477 278 56 35 chr6 166633275 166633440 -22646114 + MIR SINE MIR 85 256 -6 188 125 0 31 chr6 166633540 166633572 -22645982 - L2 LINE L2 -15 3257 3227 925 109 259 0 chr6 166634211 166634385 -22645169 - MSTA LTR MaLR -209 219 1 938 263 102 18 chr6 166634385 166634769 -22644785 - MLT1J1 LTR MaLR -28 418 3 2104 134 0 19 chr6 166634862 166635175 -22644379 + AluSx SINE Alu 1 307 -5 2201 120 0 0 chr6 166635690 166635998 -22643556 - AluY SINE Alu -3 308 1 24 32 0 0 chr6 166636081 166636112 -22643442 + AT_rich Low_complexity Low_complexity 1 31 0 1915 165 71 0 chr6 166636658 166636980 -22642574 - MER7A DNA MER2_type 0 346 4 2203 116 0 0 chr6 166637025 166637328 -22642226 + AluSx SINE Alu 1 303 -9 207 245 0 71 chr6 166637535 166637633 -22641921 + GA-rich Low_complexity Low_complexity 4 94 0 1603 107 0 13 chr6 166639235 166639459 -22640095 + AluSx SINE Alu 1 221 -91 2382 104 0 0 chr6 166639621 166639929 -22639625 + AluSx SINE Alu 1 308 -4 2743 26 0 3 chr6 166640416 166640726 -22638828 - AluYb8 SINE Alu -9 309 1 1553 186 0 34 chr6 166640952 166641248 -22638306 - AluJo SINE Alu -26 286 1 2225 127 7 0 chr6 166642520 166642828 -22636726 + AluSx SINE Alu 1 310 -2 515 282 136 19 chr6 166644664 166644877 -22634677 - MIR SINE MIR -6 256 19 932 245 0 15 chr6 166644954 166645158 -22634396 - MER20 DNA MER1_type -16 203 3 462 111 0 0 chr6 166645216 166645279 -22634275 - MSTB LTR MaLR 0 426 364 1967 146 3 10 chr6 166645491 166645799 -22633755 + AluJb SINE Alu 6 311 -1 188 0 74 0 chr6 166646118 166646145 -22633409 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2394 100 3 3 chr6 166646147 166646458 -22633096 - AluSx SINE Alu -1 311 1 343 280 38 100 chr6 166646664 166646903 -22632651 - Charlie8 DNA MER1_type -2152 265 42 2256 88 0 7 chr6 166648206 166648501 -22631053 + AluY SINE Alu 1 293 -18 320 330 47 31 chr6 166648679 166648870 -22630684 - MIR3 SINE MIR -1 207 14 1183 155 15 10 chr6 166648936 166649159 -22630395 - AluJo SINE Alu 0 307 84 235 359 0 39 chr6 166649925 166650053 -22629501 + L2 LINE L2 2956 3078 -194 217 371 121 0 chr6 166650678 166650794 -22628760 + L3 LINE CR1 1442 1571 -6 609 230 16 8 chr6 166650820 166650946 -22628608 + L2 LINE L2 3183 3309 -4 276 306 116 0 chr6 166651364 166651511 -22628043 - LTR33A LTR ERVL -329 194 31 2022 104 49 7 chr6 166653966 166654253 -22625301 - AluSx SINE Alu -13 299 1 21 0 0 0 chr6 166654333 166654354 -22625200 + AT_rich Low_complexity Low_complexity 1 21 0 523 68 0 0 chr6 166654630 166654703 -22624851 - Alu SINE Alu 0 310 238 537 235 29 7 chr6 166654853 166654989 -22624565 - MIR SINE MIR -12 250 112 603 279 109 0 chr6 166655003 166655204 -22624350 + MER58A DNA MER1_type 1 223 -1 2471 79 3 0 chr6 166655946 166656251 -22623303 + AluSp SINE Alu 1 306 -7 463 279 22 0 chr6 166656596 166656732 -22622822 + MER5B DNA MER1_type 1 139 -39 345 258 210 8 chr6 166657820 166657944 -22621610 + MER5A DNA MER1_type 40 188 -1 211 306 139 37 chr6 166657967 166658075 -22621479 + MER5A DNA MER1_type 43 161 -28 307 200 0 92 chr6 166658300 166658344 -22621210 + Tigger3(Golem) DNA MER2_type 2 40 -2989 1563 123 119 15 chr6 166658344 166658612 -22620942 + AluSg SINE Alu 1 296 -14 307 200 0 92 chr6 166658612 166658632 -22620922 + Tigger3(Golem) DNA MER2_type 40 60 -2969 667 245 27 0 chr6 166658633 166658780 -22620774 + Tigger3(Golem) DNA MER2_type 2878 3028 -1 1690 39 0 19 chr6 166659063 166659269 -22620285 + AluY SINE Alu 97 298 -13 2216 108 7 0 chr6 166660314 166660611 -22618943 - AluSq SINE Alu -14 299 1 1699 136 1 19 chr6 166660639 166660971 -22618583 + MER1B DNA MER1_type 30 329 -10 1132 178 84 75 chr6 166661807 166661870 -22617684 + MER33 DNA MER1_type 1 62 -2523 1513 159 123 14 chr6 166661870 166662146 -22617408 + AluJb SINE Alu 1 306 -6 1132 178 84 75 chr6 166662146 166662314 -22617240 + MER33 DNA MER1_type 62 227 -2358 2484 73 7 0 chr6 166662314 166662616 -22616938 - AluSq SINE Alu -9 304 1 1738 130 74 33 chr6 166662619 166662918 -22616636 - AluJo SINE Alu 0 312 2 1132 178 84 75 chr6 166662918 166663002 -22616552 + MER33 DNA MER1_type 228 324 0 605 241 32 0 chr6 166664609 166664767 -22614787 + L1MD3 LINE L1 7825 7987 -8 2460 210 25 27 chr6 166664793 166665355 -22614199 - L1MA10 LINE L1 -14 6320 5760 1478 171 6 69 chr6 166665343 166665693 -22613861 + L1 LINE L1 4930 5257 -889 * 2153 169 22 8 chr6 166665860 166666220 -22613334 + MLT1A1 LTR MaLR 1 365 0 2332 112 0 3 chr6 166666371 166666684 -22612870 + AluSx SINE Alu 1 312 0 356 248 97 62 chr6 166666836 166666981 -22612573 + MLT1J2 LTR MaLR 7 156 -294 710 261 41 45 chr6 166667153 166667503 -22612051 + MLT1F1 LTR MaLR 209 560 0 2542 77 0 0 chr6 166668580 166668890 -22610664 + AluSg SINE Alu 1 310 0 311 241 157 36 chr6 166668981 166669255 -22610299 + L1ME4a LINE L1 5812 6118 -3 32 0 0 0 chr6 166669302 166669334 -22610220 + AT_rich Low_complexity Low_complexity 1 32 0 200 200 0 0 chr6 166672441 166672466 -22607088 + A-rich Low_complexity Low_complexity 5 32 -12 2378 101 0 0 chr6 166672466 166672764 -22606790 + AluSg SINE Alu 1 298 -12 200 200 0 0 chr6 166672764 166672778 -22606776 + A-rich Low_complexity Low_complexity 31 44 0 1965 133 3 7 chr6 166673146 166673440 -22606114 - AluSx SINE Alu -19 293 1 1259 195 3 102 chr6 166673754 166673894 -22605660 + AluSq SINE Alu 1 91 -222 1943 149 0 27 chr6 166673894 166674189 -22605365 + AluSx SINE Alu 1 287 -25 1259 195 3 102 chr6 166674189 166674381 -22605173 + AluSq SINE Alu 91 300 -13 183 80 0 0 chr6 166675100 166675125 -22604429 + (T)n Simple_repeat Simple_repeat 1 25 0 675 256 4 71 chr6 166675240 166675373 -22604181 - L1MEc LINE L1 -2304 3911 3771 1514 106 101 0 chr6 166675373 166675600 -22603954 - AluY SINE Alu -18 293 44 4861 177 63 9 chr6 166675601 166676453 -22603101 + MER54A LTR ERVL 4 901 0 675 256 4 71 chr6 166676453 166676555 -22602999 - L1MEc LINE L1 -2443 3772 3690 772 140 10 22 chr6 166676555 166676704 -22602850 + MSTC LTR MaLR 1 150 -215 2056 128 0 0 chr6 166676711 166677039 -22602515 + AluSx SINE Alu 1 328 0 492 264 31 0 chr6 166677194 166677323 -22602231 - L1MEc LINE L1 -2615 3600 3468 597 253 11 17 chr6 166677404 166677582 -22601972 - L1MEc LINE L1 -3579 2636 2460 1330 266 78 34 chr6 166677598 166677692 -22601862 - L1MEc LINE L1 -4177 2219 2131 1708 162 7 35 chr6 166677692 166678025 -22601529 - AluJo SINE Alu 0 325 1 1330 266 78 34 chr6 166678025 166678662 -22600892 - L1MEc LINE L1 -4265 2131 1455 2521 103 14 11 chr6 166679235 166679593 -22599961 + L1PB4 LINE L1 5795 6153 -3 23 0 0 0 chr6 166679765 166679788 -22599766 + AT_rich Low_complexity Low_complexity 1 23 0 315 224 0 0 chr6 166680005 166680072 -22599482 + L1MC1 LINE L1 5204 5270 -876 6989 119 8 9 chr6 166680072 166681086 -22598468 - Tigger1 DNA MER2_type 0 2418 1406 * 8117 106 23 42 chr6 166681084 166681130 -22598424 - Tigger1 DNA MER2_type -1146 1272 1227 2253 129 0 0 chr6 166681130 166681439 -22598115 + AluSx SINE Alu 1 309 -3 8117 106 23 42 chr6 166681439 166682689 -22596865 - Tigger1 DNA MER2_type -1191 1227 1 6423 143 27 3 chr6 166682695 166683732 -22595822 + L1MC1 LINE L1 5272 6333 0 2235 77 14 7 chr6 166684025 166684312 -22595242 - AluSc SINE Alu -20 289 1 1503 113 0 10 chr6 166684792 166684996 -22594558 + AluSg/x SINE Alu 87 288 -24 258 106 0 0 chr6 166684996 166685043 -22594511 + (TA)n Simple_repeat Simple_repeat 2 48 0 2171 100 3 3 chr6 166685500 166685789 -22593765 + AluSq SINE Alu 1 289 -24 255 287 23 31 chr6 166686716 166686845 -22592709 + GA-rich Low_complexity Low_complexity 2 129 0 535 263 38 6 chr6 166687301 166687461 -22592093 + LTR33 LTR ERVL 5 169 -352 657 287 56 45 chr6 166687565 166687924 -22591630 - LTR24B LTR ERV1 -7 569 207 432 158 0 13 chr6 166687988 166688064 -22591490 - LTR24B LTR ERV1 -498 78 4 205 182 36 0 chr6 166688591 166688646 -22590908 + CT-rich Low_complexity Low_complexity 3 59 0 296 275 60 27 chr6 166690517 166690666 -22588888 - L1ME3A LINE L1 -2 6168 6015 207 0 0 0 chr6 166690818 166690841 -22588713 + (A)n Simple_repeat Simple_repeat 1 23 0 484 276 163 20 chr6 166690888 166691084 -22588470 + MIR SINE MIR 21 244 -18 219 278 122 0 chr6 166691380 166691470 -22588084 + MIR SINE MIR 45 145 -63 2114 124 10 0 chr6 166691944 166692242 -22587312 + AluSx SINE Alu 1 301 -11 2020 157 23 3 chr6 166692307 166692657 -22586897 - L1MB4 LINE L1 0 6180 5824 1975 145 0 3 chr6 166692872 166693162 -22586392 + AluJb SINE Alu 6 294 -18 229 340 99 26 chr6 166694409 166694641 -22584913 - L2 LINE L2 -562 2752 2504 2205 130 0 3 chr6 166694699 166695007 -22584547 - AluSp SINE Alu -6 307 1 1827 159 7 7 chr6 166695018 166695313 -22584241 - AluJo SINE Alu -17 295 1 43 35 0 0 chr6 166695898 166695955 -22583599 + AT_rich Low_complexity Low_complexity 1 57 0 2024 101 42 14 chr6 166697046 166697334 -22582220 - AluSx SINE Alu -12 300 5 246 62 0 0 chr6 166697596 166697628 -22581926 + (TG)n Simple_repeat Simple_repeat 2 33 0 5223 92 55 13 chr6 166697747 166698374 -22581180 - L1PA10 LINE L1 -17 6151 5485 2433 84 7 0 chr6 166698374 166698672 -22580882 - AluSq SINE Alu -13 300 1 5223 92 55 13 chr6 166698672 166698809 -22580745 - L1PA10 LINE L1 -683 5485 5355 364 278 97 0 chr6 166699587 166699731 -22579823 + MIR SINE MIR 71 228 -34 1527 184 55 3 chr6 166699761 166700054 -22579500 + AluJo SINE Alu 2 309 -3 1907 113 0 4 chr6 166701131 166701388 -22578166 - AluSc SINE Alu 0 309 54 1684 102 57 8 chr6 166701388 166701631 -22577923 - AluSc SINE Alu -52 257 1 2177 102 19 29 chr6 166702221 166702536 -22577018 - AluSx SINE Alu 0 312 1 2317 104 0 10 chr6 166703059 166703367 -22576187 - AluSq SINE Alu -6 307 3 2311 115 0 3 chr6 166704145 166704457 -22575097 - AluSq SINE Alu -2 311 1 199 285 41 65 chr6 166704912 166705035 -22574519 + L2 LINE L2 3161 3280 -33 2259 121 0 3 chr6 166705249 166705547 -22574007 + AluSx SINE Alu 1 297 -15 953 208 125 7 chr6 166705707 166705995 -22573559 - MER5C DNA MER1_type 0 324 3 2220 124 3 13 chr6 166709337 166709652 -22569902 + AluSx SINE Alu 1 312 0 360 266 179 66 chr6 166709793 166710067 -22569487 + L2 LINE L2 3009 3313 0 189 351 0 0 chr6 166710062 166710136 -22569418 + MIR SINE MIR 137 210 -52 * 213 301 41 0 chr6 166710291 166710364 -22569190 + L2 LINE L2 3156 3231 -41 649 200 140 0 chr6 166710501 166710651 -22568903 - MER5B DNA MER1_type 0 178 8 180 270 95 0 chr6 166710929 166710992 -22568562 - MIR SINE MIR -11 251 183 2166 100 0 14 chr6 166711172 166711453 -22568101 + AluSx SINE Alu 5 281 -31 234 0 0 0 chr6 166711453 166711479 -22568075 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 901 176 39 7 chr6 166711780 166711933 -22567621 + AluSg/x SINE Alu 133 290 -20 1663 162 0 0 chr6 166711933 166712186 -22567368 + AluSx SINE Alu 1 253 -59 262 167 0 0 chr6 166712235 166712283 -22567271 + AluSx SINE Alu 251 298 -2 316 240 165 33 chr6 166713777 166713898 -22565656 - MER3 DNA MER1_type -68 141 5 2326 97 0 7 chr6 166714207 166714515 -22565039 - AluSc SINE Alu -3 306 1 2308 189 56 28 chr6 166715718 166716180 -22563374 + L1MB2 LINE L1 5650 6129 -42 1500 188 64 3 chr6 166716180 166716462 -22563092 + AluJb SINE Alu 1 299 -13 2308 189 56 28 chr6 166716462 166716503 -22563051 + L1MB2 LINE L1 6129 6167 -4 25 23 0 23 chr6 166716507 166716525 -22563029 + AT_rich Low_complexity Low_complexity 1 18 -24 2173 107 3 7 chr6 166716525 166716823 -22562731 + AluSx SINE Alu 1 297 -15 25 23 0 23 chr6 166716823 166716847 -22562707 + AT_rich Low_complexity Low_complexity 18 42 0 2276 94 3 0 chr6 166716901 166717189 -22562365 + AluSx SINE Alu 1 289 -23 186 304 36 0 chr6 166717545 166717601 -22561953 - MIR SINE MIR -58 150 93 745 136 0 0 chr6 166718302 166718412 -22561142 + AluJb SINE Alu 18 127 -185 255 287 167 23 chr6 166718473 166718647 -22560907 - L3 LINE CR1 -68 1509 1311 197 200 20 0 chr6 166718737 166718787 -22560767 - L3 LINE CR1 -576 1001 951 877 302 78 35 chr6 166719001 166719545 -22560009 - L1M4 LINE L1 -913 5233 4649 2400 142 41 14 chr6 166719545 166719960 -22559594 - MSTB LTR MaLR 0 426 1 877 302 78 35 chr6 166719960 166720131 -22559423 - L1M4 LINE L1 -1497 4649 4487 357 266 75 71 chr6 166720378 166720504 -22559050 - L3 LINE CR1 -948 629 500 2325 106 0 3 chr6 166720504 166720806 -22558748 - AluSx SINE Alu -11 301 1 357 266 75 71 chr6 166720806 166720905 -22558649 - L3 LINE CR1 -1077 500 403 1765 145 48 17 chr6 166721280 166721569 -22557985 + AluJb SINE Alu 1 298 -14 681 148 17 9 chr6 166723524 166723639 -22555915 + FLAM_C SINE Alu 3 118 -15 209 122 24 0 chr6 166725932 166725973 -22553581 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 181 286 48 0 chr6 166725982 166726045 -22553509 - L2 LINE L2 -579 2735 2670 756 222 20 0 chr6 166726685 166726838 -22552716 + L1ME1 LINE L1 5961 6116 -50 666 140 0 0 chr6 166726839 166726939 -22552615 - FLAM_A SINE Alu -42 100 1 2242 89 0 0 chr6 166727021 166727301 -22552253 + AluSg SINE Alu 1 280 -30 432 55 0 0 chr6 166727304 166727359 -22552195 + (CATA)n Simple_repeat Simple_repeat 2 56 0 1726 180 17 3 chr6 166727821 166728121 -22551433 + AluJo SINE Alu 7 310 -2 199 229 0 21 chr6 166729523 166729571 -22549983 - L3 LINE CR1 -643 934 888 251 257 182 0 chr6 166730117 166730265 -22549289 + L1ME4a LINE L1 5943 6117 -4 1836 126 3 21 chr6 166730639 166730924 -22548630 - AluSx SINE Alu 0 312 33 2300 107 0 3 chr6 166731679 166731987 -22547567 - AluSg SINE Alu -3 307 1 521 68 14 0 chr6 166733828 166733902 -22545652 + (TA)n Simple_repeat Simple_repeat 2 76 0 803 199 70 25 chr6 166734459 166734660 -22544894 - MER6B DNA MER2_type 0 210 1 2293 109 143 8 chr6 166735183 166735560 -22543994 - MSTA LTR MaLR 0 428 1 1426 209 72 45 chr6 166736181 166736460 -22543094 - MER21B LTR ERV1 -4 859 566 2117 105 0 13 chr6 166736460 166736596 -22542958 + AluSx SINE Alu 1 137 -175 2363 63 0 3 chr6 166736596 166736899 -22542655 + AluY SINE Alu 1 302 -9 2117 105 0 13 chr6 166736899 166737066 -22542488 + AluSx SINE Alu 137 300 -12 1426 209 72 45 chr6 166737066 166737145 -22542409 - MER21B LTR ERV1 -297 566 491 2980 140 98 35 chr6 166737148 166737545 -22542009 + MER21A LTR ERV1 4 375 -556 2094 116 3 0 chr6 166737545 166737848 -22541706 - AluSx SINE Alu -8 304 1 2980 140 98 35 chr6 166737848 166738217 -22541337 + MER21A LTR ERV1 375 930 -1 365 146 158 12 chr6 166738218 166738300 -22541254 - MER21B LTR ERV1 -368 495 402 627 214 63 139 chr6 166738395 166738647 -22540907 - MER21B LTR ERV1 -630 233 1 239 259 86 12 chr6 166739595 166739676 -22539878 - L2 LINE L2 -1018 2296 2210 262 286 160 34 chr6 166739690 166739865 -22539689 - L2 LINE L2 -1 3271 3075 2161 110 0 0 chr6 166740964 166741263 -22538291 + AluSx SINE Alu 1 299 -13 1978 128 7 0 chr6 166742370 166742666 -22536888 + AluSx SINE Alu 1 298 -14 769 252 29 29 chr6 166742668 166742878 -22536676 - MIR SINE MIR -5 257 48 2265 82 7 0 chr6 166742908 166743212 -22536342 - AluSp SINE Alu -7 306 1 328 302 115 7 chr6 166744166 166744305 -22535249 + L2 LINE L2 3115 3268 -4 1763 150 31 0 chr6 166744745 166745031 -22534523 + AluJb SINE Alu 1 295 -17 1990 122 7 0 chr6 166745167 166745463 -22534091 - AluSx SINE Alu -14 298 1 1118 102 6 18 chr6 166746196 166746362 -22533192 - AluSx SINE Alu -148 164 1 300 27 0 0 chr6 166746573 166746610 -22532944 + (TGG)n Simple_repeat Simple_repeat 1 37 0 1529 119 136 0 chr6 166746612 166746863 -22532691 - AluSx SINE Alu -27 285 1 241 359 129 18 chr6 166747729 166747899 -22531655 - L2 LINE L2 0 3272 3084 342 318 179 40 chr6 166748196 166748548 -22531006 - L2 LINE L2 -567 2747 2347 1961 200 80 0 chr6 166748558 166748933 -22530621 - MER68 LTR ERV1 -83 479 75 347 354 12 19 chr6 166748963 166749124 -22530430 - L2 LINE L2 -954 2360 2201 247 206 63 16 chr6 166749166 166749229 -22530325 - MIR3 SINE MIR -36 172 107 2207 69 14 7 chr6 166749541 166749829 -22529725 + AluY SINE Alu 1 290 -21 280 318 79 8 chr6 166749873 166749999 -22529555 - L2 LINE L2 -36 3277 3143 1433 36 0 0 chr6 166750263 166750431 -22529123 + L1PA5 LINE L1 5985 6152 -2 1909 114 7 7 chr6 166751697 166751999 -22527555 - AluSg SINE Alu 0 302 1 2245 89 6 10 chr6 166752177 166752490 -22527064 - AluSx SINE Alu 0 312 1 455 213 28 78 chr6 166752774 166752915 -22526639 - MLT1K LTR MaLR 0 588 455 2367 78 0 7 chr6 166753541 166753850 -22525704 + AluY SINE Alu 1 307 -4 2403 67 0 0 chr6 166753870 166754167 -22525387 + AluY SINE Alu 1 297 -14 1782 115 0 0 chr6 166754382 166754634 -22524920 - AluSg SINE Alu -14 296 45 1862 138 0 0 chr6 166754694 166755010 -22524544 - AluSx SINE Alu 0 316 1 414 57 0 0 chr6 166756628 166756681 -22522873 + (TC)n Simple_repeat Simple_repeat 2 54 0 1104 208 23 9 chr6 166757925 166758146 -22521408 - MER58A DNA MER1_type 0 224 1 1961 113 41 3 chr6 166759224 166759515 -22520039 - AluSg SINE Alu -8 302 1 1762 122 3 61 chr6 166759894 166760206 -22519348 + AluJb SINE Alu 1 294 -18 1903 246 39 23 chr6 166760259 166760820 -22518734 + L1ME LINE L1 41 610 -5786 2366 254 103 50 chr6 166760821 166761980 -22517574 + L1ME LINE L1 799 2078 -4137 1851 192 26 3 chr6 166761980 166762319 -22517235 + MER7A DNA MER2_type 2 346 0 2366 254 103 50 chr6 166762319 166763222 -22516332 + L1ME LINE L1 2078 2932 -3283 1766 202 72 42 chr6 166763218 166763475 -22516079 + L1ME LINE L1 5269 5517 -718 * 1222 150 113 40 chr6 166763475 166763749 -22515805 + AluJo SINE Alu 1 294 -18 2032 127 0 3 chr6 166763754 166764054 -22515500 + AluSx SINE Alu 1 299 -13 1766 202 72 42 chr6 166764054 166764294 -22515260 + L1ME LINE L1 5520 5787 -448 1241 206 85 114 chr6 166764381 166764747 -22514807 + HAL1 LINE L1 1155 1530 -977 1866 123 3 115 chr6 166764747 166765087 -22514467 + AluSx SINE Alu 1 302 0 1241 206 85 114 chr6 166765087 166765168 -22514386 + HAL1 LINE L1 1530 1612 -895 2262 51 41 7 chr6 166765168 166765461 -22514093 + AluY SINE Alu 1 303 -8 1241 206 85 114 chr6 166765461 166765598 -22513956 + HAL1 LINE L1 1612 1723 -784 609 137 137 68 chr6 166765599 166765745 -22513809 + AluJo SINE Alu 44 199 -113 1540 185 211 46 chr6 166765775 166766229 -22513325 - MLT1E LTR MaLR -2 591 63 228 301 132 15 chr6 166766250 166766386 -22513168 + HAL1 LINE L1 1752 1903 -604 334 288 209 16 chr6 166766488 166766808 -22512746 + HAL1 LINE L1 2048 2429 -78 221 57 29 0 chr6 166766820 166766855 -22512699 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 504 79 0 0 chr6 166766857 166766920 -22512634 - AluSp/q SINE Alu -26 287 225 1891 94 4 0 chr6 166766921 166767175 -22512379 - AluSp SINE Alu -58 255 1 22 0 0 0 chr6 166767250 166767272 -22512282 + AT_rich Low_complexity Low_complexity 1 22 0 1961 130 0 10 chr6 166767279 166767578 -22511976 + AluSx SINE Alu 1 296 -16 1455 132 44 48 chr6 166768008 166768280 -22511274 - MLT1B LTR MaLR 0 390 120 581 135 0 29 chr6 166768280 166768384 -22511170 - FRAM SINE Alu -5 171 71 307 194 139 14 chr6 166768384 166768456 -22511098 - MLT1B LTR MaLR -305 85 5 1783 103 20 63 chr6 166768757 166769057 -22510497 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr6 166769479 166769500 -22510054 + AT_rich Low_complexity Low_complexity 1 21 0 2272 80 0 7 chr6 166770582 166770882 -22508672 - AluSc SINE Alu -11 298 1 485 230 20 74 chr6 166771268 166771416 -22508138 + MIR SINE MIR 119 258 -4 326 154 108 0 chr6 166771522 166771587 -22507967 + L1MC5 LINE L1 6975 7046 -915 701 178 0 0 chr6 166771847 166771965 -22507589 - FLAM_C SINE Alu -15 118 1 2502 40 0 7 chr6 166772070 166772371 -22507183 + AluY SINE Alu 1 299 -12 312 70 0 0 chr6 166772371 166772414 -22507140 + (TA)n Simple_repeat Simple_repeat 1 43 0 29 47 0 0 chr6 166772474 166772517 -22507037 + AT_rich Low_complexity Low_complexity 1 43 0 2175 101 0 0 chr6 166772875 166773171 -22506383 + AluSx SINE Alu 1 296 -16 215 238 0 0 chr6 166773657 166773699 -22505855 + CT-rich Low_complexity Low_complexity 1 42 0 1740 166 7 7 chr6 166773927 166774216 -22505338 - AluJb SINE Alu -23 289 1 199 219 24 0 chr6 166774218 166774259 -22505295 - L2 LINE L2 -15 3257 3216 1838 141 3 0 chr6 166774354 166774683 -22504871 + AluSx SINE Alu 1 330 0 1701 134 46 46 chr6 166775837 166776143 -22503411 - AluSx SINE Alu -6 306 1 2192 86 7 3 chr6 166776706 166776998 -22502556 + AluSx SINE Alu 1 293 -19 226 224 0 60 chr6 166777628 166777695 -22501859 + CT-rich Low_complexity Low_complexity 6 68 0 384 250 189 0 chr6 166777772 166777904 -22501650 - MER5A DNA MER1_type -24 165 9 487 269 26 13 chr6 166778929 166779085 -22500469 + MIR SINE MIR 58 215 -47 817 253 86 20 chr6 166779129 166779374 -22500180 + MIR SINE MIR 2 262 0 1516 216 52 35 chr6 166780403 166780792 -22498762 - MLT1C LTR MaLR 0 467 67 2043 80 0 0 chr6 166780792 166781056 -22498498 + AluSg1 SINE Alu 30 293 -16 1516 216 52 35 chr6 166781056 166781125 -22498429 - MLT1C LTR MaLR -400 67 1 1530 104 4 48 chr6 166781746 166781924 -22497630 - AluSx SINE Alu 0 303 138 2044 131 0 0 chr6 166781924 166782230 -22497324 - AluSx SINE Alu -6 306 1 1530 104 4 48 chr6 166782230 166782321 -22497233 - AluSx SINE Alu -165 138 45 206 231 0 0 chr6 166783048 166783087 -22496467 - MIR SINE MIR -25 237 199 291 343 89 12 chr6 166783272 166783441 -22496113 - MIR SINE MIR -72 190 9 2703 160 23 39 chr6 166784746 166785279 -22494275 + L1MA4A LINE L1 5750 6275 -28 1832 147 3 0 chr6 166785279 166785565 -22493989 + AluSx SINE Alu 1 287 -25 2703 160 23 39 chr6 166785565 166785594 -22493960 + L1MA4A LINE L1 6275 6303 0 2136 117 0 0 chr6 166786280 166786579 -22492975 + AluSx SINE Alu 1 299 -13 1981 65 0 11 chr6 166787408 166787670 -22491884 - AluY SINE Alu 0 311 53 2173 110 0 0 chr6 166788263 166788562 -22490992 + AluSx SINE Alu 1 299 -13 1931 146 7 0 chr6 166790250 166790559 -22488995 - AluJb SINE Alu -1 311 1 21 0 0 0 chr6 166790649 166790670 -22488884 + AT_rich Low_complexity Low_complexity 1 21 0 185 352 7 62 chr6 166791014 166791159 -22488395 + L3b LINE CR1 1233 1369 -214 2184 122 0 0 chr6 166791458 166791770 -22487784 - AluSx SINE Alu 0 312 1 2245 84 13 0 chr6 166792116 166792415 -22487139 - AluSg1 SINE Alu -6 303 1 1325 188 63 105 chr6 166792586 166792710 -22486844 + Charlie4a DNA MER1_type 24 152 -1809 1805 153 10 3 chr6 166792710 166793005 -22486549 - AluJb SINE Alu -15 297 1 1325 188 63 105 chr6 166793005 166793242 -22486312 + Charlie4a DNA MER1_type 152 361 -1600 1843 115 68 0 chr6 166793242 166793520 -22486034 + AluSq SINE Alu 1 297 -16 1325 188 63 105 chr6 166793520 166793663 -22485891 + Charlie4a DNA MER1_type 361 508 0 2213 101 13 0 chr6 166794403 166794711 -22484843 - AluSx SINE Alu 0 312 1 1613 182 3 22 chr6 166794784 166795097 -22484457 - AluJb SINE Alu -5 307 1 1019 139 5 53 chr6 166795396 166795605 -22483949 + AluJo SINE Alu 114 312 0 486 284 37 19 chr6 166795606 166795768 -22483786 + MER5A DNA MER1_type 18 182 -7 262 313 0 12 chr6 166795780 166795860 -22483694 + L2 LINE L2 3234 3312 -1 196 281 24 73 chr6 166796167 166796249 -22483305 - L2 LINE L2 -6 3266 3189 2290 91 0 3 chr6 166796424 166796733 -22482821 - AluSc SINE Alu -1 308 1 1826 106 0 19 chr6 166798280 166798544 -22481010 + AluSx SINE Alu 49 307 -5 1636 153 24 17 chr6 166798857 166799151 -22480403 - AluJb SINE Alu -16 296 1 626 299 20 59 chr6 166799389 166799660 -22479894 - MIR SINE MIR -2 260 3 1973 142 0 13 chr6 166800251 166800562 -22478992 + AluSx SINE Alu 1 307 -5 218 347 169 25 chr6 166800785 166801027 -22478527 - L2 LINE L2 -20 3252 2976 819 238 70 5 chr6 166801153 166801367 -22478187 + MIR SINE MIR 34 261 -1 187 378 74 15 chr6 166801469 166801604 -22477950 - L2 LINE L2 -2607 707 565 2371 39 0 0 chr6 166802397 166802716 -22476838 + AluY SINE Alu 1 319 0 21 0 0 0 chr6 166803238 166803259 -22476295 + AT_rich Low_complexity Low_complexity 1 21 0 1105 141 0 18 chr6 166803278 166803448 -22476106 + FAM SINE Alu 1 167 -8 2398 186 71 31 chr6 166803611 166804103 -22475451 + L1MB4 LINE L1 5593 6109 -71 1917 117 21 0 chr6 166804103 166804394 -22475160 + AluSq SINE Alu 1 297 -16 2398 186 71 31 chr6 166804394 166804423 -22475131 + L1MB4 LINE L1 6109 6135 -45 943 163 0 0 chr6 166804423 166804576 -22474978 + FRAM SINE Alu 1 146 -30 213 39 0 0 chr6 166804579 166804605 -22474949 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 415 278 78 54 chr6 166804867 166804977 -22474577 + MIR SINE MIR 34 140 -122 1691 174 0 3 chr6 166804977 166805259 -22474295 + AluJo SINE Alu 1 281 -31 219 69 0 0 chr6 166805262 166805291 -22474263 + (TAA)n Simple_repeat Simple_repeat 1 29 0 415 278 78 54 chr6 166805291 166805381 -22474173 + MIR SINE MIR 141 243 -19 2273 94 0 0 chr6 166805442 166805739 -22473815 - AluSx SINE Alu -15 297 1 1097 131 0 6 chr6 166806590 166806758 -22472796 + L1MB3 LINE L1 6007 6173 -10 1312 161 0 5 chr6 166806785 166806996 -22472558 - AluJo SINE Alu -102 210 1 238 244 24 171 chr6 166807098 166807180 -22472374 + MIR SINE MIR 44 114 -94 1052 94 0 0 chr6 166807180 166807318 -22472236 - AluSq/x SINE Alu -174 138 1 420 325 91 9 chr6 166807392 166807623 -22471931 - MIR SINE MIR 0 262 13 2105 116 0 0 chr6 166808783 166809077 -22470477 - AluSx SINE Alu -18 294 1 1327 265 94 48 chr6 166809197 166809763 -22469791 - MLT1G1 LTR MaLR 0 595 4 1670 163 49 0 chr6 166809906 166810194 -22469360 + AluJo SINE Alu 1 302 -10 912 134 0 0 chr6 166810437 166810571 -22468983 + AluSq/x SINE Alu 1 134 -179 2273 80 0 16 chr6 166810572 166810886 -22468668 + AluY SINE Alu 1 309 -2 3410 115 27 127 chr6 166810887 166811320 -22468234 + Tigger3(Golem) DNA MER2_type 2393 2729 -299 2116 120 0 0 chr6 166811320 166811619 -22467935 - AluSq SINE Alu -14 299 1 3410 115 27 127 chr6 166811619 166811892 -22467662 + Tigger3(Golem) DNA MER2_type 2729 3028 0 2204 75 4 0 chr6 166812015 166812318 -22467236 + AluY SINE Alu 1 304 0 229 180 158 0 chr6 166812740 166812807 -22466747 + MIR SINE MIR 81 145 -63 341 343 59 29 chr6 166813324 166813528 -22466026 + L3 LINE CR1 1359 1568 -9 309 259 25 0 chr6 166814099 166814180 -22465374 + L1MC4 LINE L1 6609 6691 -1351 1967 143 0 10 chr6 166814286 166814594 -22464960 - AluJb SINE Alu -7 305 1 327 361 49 7 chr6 166814649 166814793 -22464761 + MLT1K LTR MaLR 14 163 -425 2096 149 35 16 chr6 166814798 166815166 -22464388 + THE1C LTR MaLR 1 375 0 1949 95 18 0 chr6 166815166 166815449 -22464105 + THE1C-int LTR MaLR 1 288 -1292 1976 152 110 33 chr6 166815476 166815904 -22463650 + LTR10A LTR ERV1 82 542 -67 4987 136 33 51 chr6 166815914 166816331 -22463223 + THE1C-int LTR MaLR 283 679 -901 216 0 0 0 chr6 166816331 166816355 -22463199 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4987 136 33 51 chr6 166816355 166816766 -22462788 + THE1C-int LTR MaLR 679 1096 -484 1539 159 110 65 chr6 166816766 166817194 -22462360 + LTR7 LTR ERV1 1 447 -3 3443 90 11 11 chr6 166817195 166817672 -22461882 + THE1C-int LTR MaLR 1098 1574 -6 2015 136 29 32 chr6 166817674 166818050 -22461504 + THE1C LTR MaLR 1 375 0 1008 284 39 47 chr6 166818058 166818420 -22461134 + MLT1K LTR MaLR 205 563 -25 22 0 0 0 chr6 166818617 166818639 -22460915 + AT_rich Low_complexity Low_complexity 1 22 0 186 337 89 77 chr6 166819323 166819412 -22460142 - L2 LINE L2 -575 2739 2646 2321 87 3 0 chr6 166819412 166819721 -22459833 + AluSx SINE Alu 1 310 -2 186 337 89 77 chr6 166819721 166819800 -22459754 - L2 LINE L2 -668 2646 2569 1075 245 74 74 chr6 166819830 166820239 -22459315 + MLT1C LTR MaLR 1 412 -55 2096 154 30 28 chr6 166820239 166820602 -22458952 + THE1B LTR MaLR 1 364 0 1075 245 74 74 chr6 166820602 166820653 -22458901 + MLT1C LTR MaLR 411 461 -6 831 157 0 15 chr6 166820873 166821007 -22458547 + FLAM_C SINE Alu 2 133 -10 1496 159 6 70 chr6 166821011 166821326 -22458228 + AluJb SINE Alu 2 296 -16 254 196 0 0 chr6 166821365 166821411 -22458143 - Charlie7 DNA MER1_type -2258 354 309 824 94 0 8 chr6 166823038 166823155 -22456399 - AluSg/x SINE Alu -6 303 188 1698 154 0 24 chr6 166823234 166823526 -22456028 - AluJo SINE Alu -3 309 25 214 293 85 0 chr6 166824293 166824375 -22455179 + MIR SINE MIR 117 205 -57 2091 109 20 0 chr6 166824855 166825158 -22454396 - AluSg SINE Alu -1 309 1 464 155 0 24 chr6 166827224 166827308 -22452246 - Tigger5 DNA MER2_type 0 2323 2242 * 1308 240 37 10 chr6 166827296 166827592 -22451962 - Tigger5 DNA MER2_type -2019 304 1 224 339 0 0 chr6 166827658 166827723 -22451831 + L2 LINE L2 3188 3252 -20 1795 142 0 35 chr6 166827724 166828034 -22451520 - AluSx SINE Alu -13 299 1 2017 105 13 32 chr6 166828167 166828480 -22451074 + AluSq SINE Alu 1 307 -6 1075 193 184 8 chr6 166829128 166829372 -22450182 - AluJo SINE Alu -15 287 1 2192 106 0 7 chr6 166829725 166830028 -22449526 + AluSq SINE Alu 1 301 -12 2253 68 31 0 chr6 166830110 166830404 -22449150 + AluSp SINE Alu 1 303 -10 246 253 222 80 chr6 166830419 166830581 -22448973 + MIR SINE MIR 71 255 -7 21 0 0 0 chr6 166831107 166831128 -22448426 + AT_rich Low_complexity Low_complexity 1 21 0 2784 113 9 39 chr6 166831253 166831484 -22448070 - MSTA LTR MaLR 0 428 215 2595 85 8 3 chr6 166831484 166831836 -22447718 - THE1A LTR MaLR -1 354 1 2784 113 9 39 chr6 166831836 166832045 -22447509 - MSTA LTR MaLR -213 215 1 1691 149 32 32 chr6 166832830 166832997 -22446557 - AluJb SINE Alu -3 309 140 2247 57 0 14 chr6 166832997 166833293 -22446261 - AluY SINE Alu -19 292 1 1691 149 32 32 chr6 166833293 166833434 -22446120 - AluJb SINE Alu -171 141 1 1664 168 0 24 chr6 166833540 166833679 -22445875 + AluJb SINE Alu 1 142 -170 1966 118 10 7 chr6 166833679 166833976 -22445578 + AluSx SINE Alu 3 300 -12 1664 168 0 24 chr6 166833976 166834133 -22445421 + AluJb SINE Alu 142 290 -22 1338 182 4 4 chr6 166834245 166834481 -22445073 + AluJb SINE Alu 42 277 -35 1444 105 40 31 chr6 166834976 166835204 -22444350 - MER30 DNA MER1_type 0 230 1 1999 120 3 22 chr6 166835414 166835730 -22443824 - AluSx SINE Alu 0 312 3 1978 90 6 87 chr6 166836121 166836456 -22443098 - AluSq SINE Alu -5 308 1 2469 80 6 0 chr6 166836565 166836876 -22442678 - AluSp SINE Alu 0 313 1 1711 112 127 0 chr6 166837057 166837324 -22442230 + AluSx SINE Alu 1 301 -1 2309 107 10 0 chr6 166837880 166838180 -22441374 - AluSx SINE Alu -9 303 1 207 342 13 0 chr6 166838608 166838687 -22440867 - MIR SINE MIR -63 145 66 575 177 24 40 chr6 166838704 166838827 -22440727 - MLT1F1 LTR MaLR 0 567 447 249 94 0 0 chr6 166838827 166838859 -22440695 - MSTA LTR MaLR 0 426 395 820 143 53 0 chr6 166838859 166838992 -22440562 + AluSg/x SINE Alu 160 299 -11 2149 162 28 30 chr6 166838992 166839042 -22440512 - MSTA LTR MaLR -34 394 345 2231 117 0 3 chr6 166839042 166839342 -22440212 - AluSx SINE Alu -13 299 1 2149 162 28 30 chr6 166839342 166839686 -22439868 - MSTA LTR MaLR -83 345 1 1929 246 37 2 chr6 166839690 166840121 -22439433 - MLT1F1 LTR MaLR -120 447 2 33 43 0 0 chr6 166840336 166840383 -22439171 + AT_rich Low_complexity Low_complexity 1 47 0 1327 154 0 132 chr6 166840580 166840933 -22438621 - AluJo SINE Alu 0 310 1 2353 75 17 3 chr6 166840935 166841229 -22438325 - AluSp SINE Alu -15 298 1 1139 81 0 0 chr6 166841229 166841365 -22438189 - AluSq/x SINE Alu -177 136 1 856 155 77 26 chr6 166841375 166841530 -22438024 - FRAM SINE Alu -21 155 1 30 0 0 0 chr6 166842385 166842415 -22437139 + AT_rich Low_complexity Low_complexity 1 30 0 2371 82 3 3 chr6 166842461 166842754 -22436800 - AluSx SINE Alu -19 293 1 228 122 24 0 chr6 166842754 166842795 -22436759 + HsTC2 DNA Tc2 1815 1856 -42 281 93 19 0 chr6 166843320 166843374 -22436180 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 613 116 0 0 chr6 166843390 166843476 -22436078 - AluS SINE Alu -224 88 3 633 170 0 0 chr6 166844029 166844135 -22435419 - AluSx SINE Alu -11 298 193 1057 111 7 0 chr6 166844137 166844281 -22435273 - AluSx SINE Alu -167 145 1 2026 128 10 7 chr6 166844283 166844587 -22434967 - AluSx SINE Alu -7 305 1 387 231 50 8 chr6 166846962 166847083 -22432471 - L1ME4a LINE L1 0 6121 5996 2440 92 0 0 chr6 166847262 166847566 -22431988 - AluSx SINE Alu -8 304 1 506 279 32 6 chr6 166847758 166847916 -22431638 - L1ME4a LINE L1 -2019 5789 5628 2530 62 7 3 chr6 166847963 166848267 -22431287 + AluY SINE Alu 1 305 -6 1865 141 38 10 chr6 166848362 166848653 -22430901 - AluSx SINE Alu -13 299 1 598 227 31 0 chr6 166849933 166850061 -22429493 + FLAM_A SINE Alu 1 132 -1 299 202 40 10 chr6 166850367 166850466 -22429088 - L1ME4a LINE L1 -174 5947 5846 31 68 0 0 chr6 166850491 166850550 -22429004 + AT_rich Low_complexity Low_complexity 1 59 0 207 0 0 0 chr6 166851078 166851101 -22428453 + (T)n Simple_repeat Simple_repeat 1 23 0 2375 105 0 0 chr6 166851689 166851995 -22427559 + AluSx SINE Alu 1 306 -6 2311 91 13 13 chr6 166852299 166852607 -22426947 + AluSq SINE Alu 1 308 -5 315 122 0 0 chr6 166852607 166852656 -22426898 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 249 33 0 0 chr6 166852677 166852707 -22426847 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 257 279 93 90 chr6 166853430 166853595 -22425959 + L2 LINE L2 1892 2055 -1259 837 183 0 0 chr6 166853595 166853726 -22425828 - FLAM_C SINE Alu -2 131 1 257 279 93 90 chr6 166853726 166853904 -22425650 + L2 LINE L2 2055 2236 -1078 527 213 39 0 chr6 166853923 166854050 -22425504 + MIR SINE MIR 37 168 -94 624 295 35 79 chr6 166854088 166854403 -22425151 + L2 LINE L2 2970 3270 -2 536 287 164 4 chr6 166855899 166856174 -22423380 + L3 LINE CR1 1249 1567 -10 260 305 54 49 chr6 166857432 166857635 -22421919 + MIR SINE MIR 4 207 -55 2340 109 3 0 chr6 166857815 166858127 -22421427 - AluSq SINE Alu 0 313 1 907 279 52 15 chr6 166858630 166858956 -22420598 + MER46C DNA MER2_type 1 338 0 681 158 0 0 chr6 166859031 166859132 -22420422 + U6 snRNA snRNA 1 101 -6 2117 126 7 3 chr6 166859493 166859794 -22419760 - AluSq SINE Alu -11 302 1 239 220 0 51 chr6 166859994 166860053 -22419501 + L2 LINE L2 3248 3303 -10 2194 106 3 0 chr6 166860382 166860689 -22418865 - AluSx SINE Alu 0 308 1 860 288 59 20 chr6 166860916 166861500 -22418054 - L2 LINE L2 -274 3039 2432 185 200 60 0 chr6 166861604 166861654 -22417900 - L2 LINE L2 -976 2338 2286 305 254 79 87 chr6 166861708 166861786 -22417768 + L1ME LINE L1 5359 5436 -685 2368 100 0 0 chr6 166861786 166862096 -22417458 + AluSq SINE Alu 1 310 -3 305 254 79 87 chr6 166862096 166862395 -22417159 + L1ME LINE L1 5436 5733 -388 27 49 0 0 chr6 166862513 166862554 -22417000 + AT_rich Low_complexity Low_complexity 1 41 0 2182 114 20 0 chr6 166862810 166863108 -22416446 + AluSg SINE Alu 1 304 -6 826 181 0 0 chr6 166863158 166863291 -22416263 + FLAM_C SINE Alu 1 133 0 1346 186 0 8 chr6 166864041 166864277 -22415277 + AluJo SINE Alu 69 302 -10 325 271 178 8 chr6 166865497 166865615 -22413939 + MIR3 SINE MIR 15 152 -56 952 178 0 28 chr6 166865655 166865835 -22413719 + FAM SINE Alu 1 175 0 2187 119 0 0 chr6 166865950 166866259 -22413295 - AluSq SINE Alu 0 309 1 2586 66 0 0 chr6 166866604 166866909 -22412645 + AluY SINE Alu 2 306 -5 2019 107 15 4 chr6 166866932 166867204 -22412350 - AluSx SINE Alu -37 275 1 1000 144 0 7 chr6 166867259 166867405 -22412149 + AluJo SINE Alu 1 145 -167 2500 81 3 0 chr6 166867807 166868116 -22411438 - AluSp SINE Alu -3 310 1 2230 114 0 13 chr6 166868125 166868433 -22411121 - AluSx SINE Alu -8 304 1 2091 84 0 0 chr6 166868441 166868717 -22410837 - AluSp SINE Alu 0 309 34 272 258 21 52 chr6 166869567 166869664 -22409890 + MIR3 SINE MIR 11 104 -104 259 279 158 0 chr6 166870253 166870359 -22409195 + MIR SINE MIR 35 153 -65 2039 131 3 13 chr6 166870472 166870778 -22408776 - AluSx SINE Alu -9 303 1 2061 134 20 3 chr6 166870843 166871141 -22408413 - AluSx SINE Alu -9 303 1 253 288 65 0 chr6 166871306 166871445 -22408109 - L1ME LINE L1 -210 5911 5764 2249 91 3 0 chr6 166872350 166872636 -22406918 - AluSc SINE Alu -21 288 2 2009 97 0 4 chr6 166874215 166874474 -22405080 + AluSq SINE Alu 1 258 -55 449 230 10 10 chr6 166874493 166874593 -22404961 - AluJ SINE Alu -30 282 183 * 748 154 85 0 chr6 166874584 166874714 -22404840 - AluJ SINE Alu -170 142 2 1327 205 116 1 chr6 166874772 166874824 -22404730 - L1MB3 LINE L1 -173 6010 5965 740 159 71 16 chr6 166874824 166875006 -22404548 - L1MB4 LINE L1 -1 6179 5988 1327 205 116 1 chr6 166875006 166875305 -22404249 - L1MB3 LINE L1 -218 5965 5615 2393 105 0 0 chr6 166875305 166875609 -22403945 - AluSx SINE Alu -8 304 1 1327 205 116 1 chr6 166875609 166875637 -22403917 - L1MB3 LINE L1 -568 5615 5592 301 291 47 14 chr6 166875637 166875785 -22403769 + L2 LINE L2 3159 3311 -2 252 360 0 56 chr6 166876894 166877019 -22402535 + L2 LINE L2 3173 3290 -23 436 272 142 32 chr6 166877019 166877456 -22402098 + L1ME LINE L1 5304 5782 -339 667 316 58 4 chr6 166878079 166878354 -22401200 - L1ME LINE L1 -299 5822 5533 588 202 0 0 chr6 166878380 166878494 -22401060 + L1MA3 LINE L1 6191 6304 -1 348 284 47 20 chr6 166879600 166879748 -22399806 - L2 LINE L2 -2 3311 3160 2405 92 7 0 chr6 166880899 166881203 -22398351 - AluSx SINE Alu -6 306 1 194 33 67 0 chr6 166881779 166881809 -22397745 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2231 99 18 0 chr6 166881811 166882094 -22397460 - AluSq SINE Alu -25 288 1 2298 122 0 0 chr6 166882714 166883025 -22396529 - AluSx SINE Alu -1 311 1 906 150 86 0 chr6 166883129 166883316 -22396238 + L1MA8 LINE L1 6083 6285 -6 21 36 0 0 chr6 166883351 166883379 -22396175 + AT_rich Low_complexity Low_complexity 1 28 0 1988 98 63 14 chr6 166883695 166883980 -22395574 + AluSg SINE Alu 1 299 -11 429 129 0 0 chr6 166885003 166885065 -22394489 - MSTA LTR MaLR 0 428 367 2372 90 0 7 chr6 166885188 166885489 -22394065 + AluSg SINE Alu 1 299 -11 2324 113 131 8 chr6 166885941 166886322 -22393232 - MSTA LTR MaLR 0 428 1 1965 130 10 23 chr6 166886350 166886658 -22392896 + AluSx SINE Alu 1 304 -8 415 300 174 43 chr6 166887252 166888144 -22391410 + L2 LINE L2 2225 3313 0 2164 92 3 26 chr6 166888288 166888306 -22391248 - AluSx SINE Alu 0 312 295 253 0 0 0 chr6 166888306 166888334 -22391220 + (TTTTG)n Simple_repeat Simple_repeat 2 180 0 2164 92 3 26 chr6 166888334 166888620 -22390934 - AluSx SINE Alu -17 295 5 2463 76 7 0 chr6 166888653 166888955 -22390599 - AluSq SINE Alu -8 305 2 1088 96 0 0 chr6 166888956 166889091 -22390463 - AluSq/x SINE Alu -177 135 1 781 73 0 124 chr6 166889200 166889337 -22390217 + AluSg/x SINE Alu 178 297 -15 367 280 15 61 chr6 166889962 166890094 -22389460 + MER5B DNA MER1_type 1 126 -52 585 189 19 0 chr6 166890198 166890304 -22389250 - MER3 DNA MER1_type -3 206 99 319 325 172 7 chr6 166890676 166890827 -22388727 + MIR3 SINE MIR 32 207 -1 410 136 111 0 chr6 166890872 166890953 -22388601 + L1MA8 LINE L1 5955 6044 -247 1946 129 16 16 chr6 166890999 166891308 -22388246 - AluSx SINE Alu -3 309 1 21 0 0 0 chr6 166891355 166891376 -22388178 + AT_rich Low_complexity Low_complexity 1 21 0 489 304 16 27 chr6 166892048 166892232 -22387322 + MIR SINE MIR 14 195 -67 316 262 71 0 chr6 166892233 166892317 -22387237 - L2 LINE L2 -1 3312 3223 603 165 71 31 chr6 166892317 166892444 -22387110 + FLAM_A SINE Alu 5 136 -6 348 148 23 102 chr6 166893523 166893611 -22385943 + MIR3 SINE MIR 82 162 -46 279 269 73 62 chr6 166893919 166894111 -22385443 + MIR SINE MIR 52 245 -17 2384 155 81 30 chr6 166894220 166894534 -22385020 - L1MB2 LINE L1 -2 6169 5822 2471 93 0 3 chr6 166894534 166894847 -22384707 - AluSp SINE Alu -1 312 1 2384 155 81 30 chr6 166894847 166895002 -22384552 - L1MB2 LINE L1 -349 5822 5676 1812 101 4 16 chr6 166895765 166896022 -22383532 + AluSx SINE Alu 41 294 -18 464 261 94 33 chr6 166896381 166896657 -22382897 + L1M4 LINE L1 5050 5342 -804 387 320 41 16 chr6 166896808 166896930 -22382624 - L2 LINE L2 -9 3263 3139 2182 112 10 0 chr6 166897712 166898007 -22381547 - AluSx SINE Alu -14 298 1 375 311 40 0 chr6 166898475 166898667 -22380887 - MIR SINE MIR -19 243 42 2253 101 7 0 chr6 166898767 166899064 -22380490 + AluSq SINE Alu 1 299 -14 2094 133 3 7 chr6 166899300 166899609 -22379945 - AluSx SINE Alu -4 308 1 836 177 15 0 chr6 166900406 166900536 -22379018 + FLAM_A SINE Alu 1 132 -1 2496 231 29 5 chr6 166900717 166901272 -22378282 - MER119 DNA MER1_type 0 583 16 678 159 134 95 chr6 166901378 166901610 -22377944 - MER58B DNA MER1_type -13 328 88 1575 185 13 40 chr6 166901613 166901911 -22377643 + AluJo SINE Alu 1 290 -22 243 88 0 0 chr6 166901911 166901945 -22377609 + (GA)n Simple_repeat Simple_repeat 1 34 0 26 64 0 0 chr6 166902002 166902049 -22377505 + AT_rich Low_complexity Low_complexity 1 47 0 441 325 60 31 chr6 166902188 166902507 -22377047 - L1ME LINE L1 -349 5821 5488 2212 129 0 0 chr6 166902507 166902809 -22376745 - AluSx SINE Alu -10 302 1 441 325 60 31 chr6 166902809 166902870 -22376684 - L1ME LINE L1 -682 5488 5430 340 361 32 0 chr6 166902913 166903071 -22376483 - L1ME LINE L1 -817 5329 5167 195 42 0 0 chr6 166903583 166903607 -22375947 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1508 165 71 4 chr6 166903610 166903876 -22375678 - AluJb SINE Alu -24 288 5 26 30 0 0 chr6 166903924 166903957 -22375597 + AT_rich Low_complexity Low_complexity 1 33 0 233 241 0 0 chr6 166904370 166904424 -22375130 + A-rich Low_complexity Low_complexity 1 54 0 25 51 0 0 chr6 166904496 166904535 -22375019 + AT_rich Low_complexity Low_complexity 1 39 0 212 261 57 8 chr6 166904744 166904834 -22374720 + MIR SINE MIR 39 132 -76 2165 115 44 0 chr6 166905203 166905499 -22374055 + AluSg SINE Alu 1 309 -1 1655 127 190 3 chr6 166906234 166906518 -22373036 - MER1B DNA MER1_type 0 337 1 2059 133 10 0 chr6 166906518 166906811 -22372743 - AluSx SINE Alu -16 296 1 246 267 27 13 chr6 166907093 166907168 -22372386 + MIR SINE MIR 108 183 -79 648 269 36 22 chr6 166907264 166907487 -22372067 - MIR SINE MIR -29 233 8 2171 107 4 0 chr6 166908435 166908715 -22370839 - AluSp SINE Alu -32 281 1 1125 68 0 0 chr6 166908717 166908849 -22370705 - AluSp SINE Alu -181 132 1 424 293 82 38 chr6 166909104 166909602 -22369952 + L1M4 LINE L1 4015 4534 -1612 207 162 0 0 chr6 166909658 166909695 -22369859 + (CTATA)n Simple_repeat Simple_repeat 4 40 0 2344 89 3 0 chr6 166909806 166910099 -22369455 + AluSx SINE Alu 1 294 -18 2220 121 0 6 chr6 166910256 166910571 -22368983 - AluSq SINE Alu 0 313 1 2106 126 0 3 chr6 166910664 166910966 -22368588 - AluSx SINE Alu -11 301 1 315 267 59 64 chr6 166911182 166911369 -22368185 + L1ME4a LINE L1 5925 6110 -11 213 267 56 33 chr6 166911615 166911705 -22367849 - L2 LINE L2 -227 3086 2995 1711 151 43 0 chr6 166913142 166913421 -22366133 - AluJb SINE Alu -21 291 1 225 94 0 0 chr6 166913875 166913907 -22365647 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 917 240 199 12 chr6 166913922 166914216 -22365338 - MLT1J LTR MaLR -67 444 60 2440 64 7 0 chr6 166915043 166915341 -22364213 + AluSp SINE Alu 1 300 -13 2186 83 28 7 chr6 166915480 166915770 -22363784 - AluSq SINE Alu -17 296 1 789 184 44 0 chr6 166916140 166916276 -22363278 - AluJo SINE Alu -168 144 3 1838 130 70 7 chr6 166917316 166917600 -22361954 + AluJb SINE Alu 1 302 -10 436 289 85 19 chr6 166917813 166918024 -22361530 + MER112 DNA MER1_type 3 227 -33 1913 139 26 41 chr6 166918320 166918504 -22361050 + MER46B DNA MER2_type 1 186 -2545 1813 143 3 47 chr6 166918504 166918805 -22360749 + AluSx SINE Alu 1 288 -24 186 43 0 0 chr6 166918805 166918828 -22360726 + (TA)n Simple_repeat Simple_repeat 2 24 0 1913 139 26 41 chr6 166918828 166918986 -22360568 + MER46B DNA MER2_type 184 214 -22 23 86 0 0 chr6 166919418 166919476 -22360078 + AT_rich Low_complexity Low_complexity 1 58 0 2387 92 3 0 chr6 166919867 166920170 -22359384 + AluSc SINE Alu 1 304 -5 299 265 78 0 chr6 166921336 166921438 -22358116 + MIR SINE MIR 119 228 -34 1519 184 55 3 chr6 166921468 166921761 -22357793 + AluJo SINE Alu 2 309 -3 1896 113 0 4 chr6 166922838 166923095 -22356459 - AluSc SINE Alu 0 309 54 1662 102 57 8 chr6 166923095 166923338 -22356216 - AluSc SINE Alu -52 257 1 2156 102 19 29 chr6 166923928 166924243 -22355311 - AluSx SINE Alu 0 312 1 2294 104 0 10 chr6 166924766 166925073 -22354481 - AluSq SINE Alu -7 306 3 2299 115 0 3 chr6 166925851 166926163 -22353391 - AluSq SINE Alu -2 311 1 204 345 128 20 chr6 166926492 166926741 -22352813 + L2 LINE L2 3005 3280 -33 2239 121 0 3 chr6 166926955 166927253 -22352301 + AluSx SINE Alu 1 297 -15 1028 208 125 7 chr6 166927413 166927701 -22351853 - MER5C DNA MER1_type 0 324 3 2203 124 3 13 chr6 166931044 166931359 -22348195 + AluSx SINE Alu 1 312 0 436 266 179 66 chr6 166931500 166931774 -22347780 + L2 LINE L2 3009 3313 0 205 351 0 0 chr6 166931769 166931843 -22347711 + MIR SINE MIR 137 210 -52 * 239 301 41 0 chr6 166931998 166932071 -22347483 + L2 LINE L2 3156 3231 -41 704 200 140 0 chr6 166932208 166932358 -22347196 - MER5B DNA MER1_type 0 178 8 196 270 95 0 chr6 166932636 166932699 -22346855 - MIR SINE MIR -11 251 183 2143 100 0 14 chr6 166932879 166933160 -22346394 + AluSx SINE Alu 5 281 -31 288 77 0 0 chr6 166933160 166933199 -22346355 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 796 110 0 0 chr6 166933282 166933391 -22346163 - AluSg/x SINE Alu -4 305 197 727 268 54 44 chr6 166933816 166934021 -22345533 + MER63A DNA MER1_type 4 210 0 1687 143 4 0 chr6 166934118 166934369 -22345185 + AluJo SINE Alu 37 288 -24 527 235 115 37 chr6 166934439 166934973 -22344581 - L1MC/D LINE L1 -748 5398 4927 2145 130 0 0 chr6 166934996 166935296 -22344258 + AluSx SINE Alu 1 300 -12 729 288 118 41 chr6 166935392 166936257 -22343297 - L1MC/D LINE L1 -1437 4709 3775 2071 112 31 0 chr6 166936276 166936570 -22342984 - AluSg SINE Alu -2 308 6 51 31 0 0 chr6 166936575 166936640 -22342914 + AT_rich Low_complexity Low_complexity 1 65 0 274 284 123 43 chr6 166939767 166939879 -22339675 + L2 LINE L2 2836 2938 -375 2126 137 0 0 chr6 166939879 166940172 -22339382 - AluSx SINE Alu -19 293 1 274 284 123 43 chr6 166940172 166940450 -22339104 + L2 LINE L2 2938 3257 -56 429 281 30 24 chr6 166940753 166940920 -22338634 + MIR3 SINE MIR 19 186 -22 2320 113 0 0 chr6 166941089 166941390 -22338164 - AluSx SINE Alu -11 301 1 2245 105 10 0 chr6 166941429 166941725 -22337829 + AluY SINE Alu 1 299 -12 2113 103 68 7 chr6 166941866 166942158 -22337396 - AluSg SINE Alu 0 310 1 3125 95 48 56 chr6 166942241 166942609 -22336945 + MER75 DNA T2_type 3 372 -142 2407 93 0 3 chr6 166942609 166942919 -22336635 - AluSx SINE Alu -3 309 1 3125 95 48 56 chr6 166942919 166942967 -22336587 + MER75 DNA T2_type 372 419 -95 2229 92 3 3 chr6 166942967 166943275 -22336279 + AluSx SINE Alu 1 308 0 3125 95 48 56 chr6 166943275 166943370 -22336184 + MER75 DNA T2_type 419 514 0 2498 73 0 22 chr6 166943506 166943822 -22335732 - AluY SINE Alu -2 309 1 1747 146 36 78 chr6 166943823 166943880 -22335674 + Charlie1 DNA MER1_type 2160 2218 -543 1892 128 85 0 chr6 166943880 166944162 -22335392 + AluSx SINE Alu 1 306 -6 1747 146 36 78 chr6 166944162 166944489 -22335065 + Charlie1 DNA MER1_type 2218 2528 -233 310 148 16 33 chr6 166944472 166944533 -22335021 + Charlie1 DNA MER1_type 2702 2761 0 * 600 258 78 105 chr6 166944550 166945104 -22334450 + HAL1 LINE L1 761 1299 -1208 2117 135 7 3 chr6 166945111 166945414 -22334140 - AluSx SINE Alu -8 304 1 1807 208 83 28 chr6 166945419 166945914 -22333640 - Charlie1b DNA MER1_type 0 523 2 1530 273 149 28 chr6 166945944 166946678 -22332876 + HAL1 LINE L1 1359 2253 -254 458 152 205 18 chr6 166946678 166946790 -22332764 + FLAM_C SINE Alu 1 133 0 1530 273 149 28 chr6 166946790 166947079 -22332475 + HAL1 LINE L1 2253 2506 -1 324 300 15 5 chr6 166947096 166947272 -22332282 + L1ME LINE L1 5545 5824 -297 200 240 39 140 chr6 166947338 166947446 -22332108 + L2 LINE L2 3118 3203 -110 1720 130 116 17 chr6 166947446 166947747 -22331807 + MER1B DNA MER1_type 3 333 -4 200 240 39 140 chr6 166947747 166947817 -22331737 + L2 LINE L2 3203 3278 -35 2366 88 7 10 chr6 166948492 166948799 -22330755 + AluSx SINE Alu 1 306 -6 276 100 0 0 chr6 166950606 166950646 -22328908 + (CA)n Simple_repeat Simple_repeat 1 40 0 447 282 133 58 chr6 166951598 166951767 -22327787 - MER102b DNA MER1_type -1106 322 128 2237 102 0 20 chr6 166951767 166952071 -22327483 - AluSp SINE Alu -15 298 1 447 282 133 58 chr6 166952071 166952142 -22327412 - MER102b DNA MER1_type -1300 128 64 1026 271 80 9 chr6 166952168 166952484 -22327070 + L1MC5 LINE L1 5494 5835 -1973 2243 102 3 10 chr6 166952484 166952788 -22326766 + AluSx SINE Alu 1 302 -10 978 142 112 6 chr6 166952836 166953005 -22326549 + MER5A DNA MER1_type 3 189 0 2115 131 0 26 chr6 166953124 166953437 -22326117 + AluSx SINE Alu 1 305 -7 1617 117 0 5 chr6 166953903 166954125 -22325429 + AluSc SINE Alu 83 303 -6 2122 130 3 3 chr6 166954136 166954444 -22325110 + AluSx SINE Alu 1 308 -4 2855 219 91 81 chr6 166954453 166954865 -22324689 + L1MC5 LINE L1 6625 7031 -930 1617 199 14 3 chr6 166954865 166955162 -22324392 + AluJb SINE Alu 1 300 -12 2855 219 91 81 chr6 166955162 166955544 -22324010 + L1MC5 LINE L1 7031 7407 -554 2250 123 0 0 chr6 166955544 166955844 -22323710 + AluSx SINE Alu 1 300 -12 2855 219 91 81 chr6 166955844 166956130 -22323424 + L1MC5 LINE L1 7407 7725 -236 2194 120 0 3 chr6 166956130 166956422 -22323132 + AluSx SINE Alu 3 293 -19 2855 219 91 81 chr6 166956422 166956631 -22322923 + L1MC5 LINE L1 7725 7930 -31 1987 139 0 23 chr6 166956851 166957153 -22322401 + AluSx SINE Alu 1 295 -17 1282 91 0 0 chr6 166957319 166957484 -22322070 + AluSp SINE Alu 136 300 -13 222 343 0 0 chr6 166958292 166958359 -22321195 - L2 LINE L2 -5 3267 3201 380 303 0 53 chr6 166958487 166958619 -22320935 - MIR SINE MIR -59 149 25 924 137 14 0 chr6 166958726 166958889 -22320665 - AluSg/x SINE Alu 0 309 145 984 135 0 14 chr6 166959139 166959280 -22320274 + FRAM SINE Alu 8 146 -30 2257 131 0 0 chr6 166959297 166959609 -22319945 + AluSx SINE Alu 1 312 0 2125 125 0 0 chr6 166960495 166960783 -22318771 - AluSx SINE Alu -22 290 3 322 312 24 16 chr6 166962102 166962227 -22317327 + MER91A DNA MER1_type 21 146 -50 2128 138 0 6 chr6 166963172 166963484 -22316070 - AluJb SINE Alu -2 310 1 258 190 35 0 chr6 166963599 166963657 -22315897 + MIR SINE MIR 1 60 -202 22 0 0 0 chr6 166963988 166964010 -22315544 + AT_rich Low_complexity Low_complexity 1 22 0 2473 71 0 3 chr6 166964409 166964704 -22314850 - AluSc SINE Alu -15 294 1 189 0 0 0 chr6 166965900 166965921 -22313633 + (TA)n Simple_repeat Simple_repeat 1 21 0 2322 110 7 0 chr6 166965921 166966229 -22313325 - AluSx SINE Alu -2 310 1 2351 88 3 0 chr6 166966683 166966979 -22312575 - AluSp SINE Alu -16 297 1 2139 124 3 0 chr6 166967271 166967570 -22311984 - AluSq SINE Alu -12 301 2 216 0 0 0 chr6 166967968 166967992 -22311562 + (T)n Simple_repeat Simple_repeat 1 24 0 3150 148 20 41 chr6 166968064 166968147 -22311407 + MER44D DNA MER2_type 1 84 -2403 2028 94 83 4 chr6 166968147 166968423 -22311131 + AluSx SINE Alu 1 298 -14 762 183 79 12 chr6 166968426 166968590 -22310964 + FAM SINE Alu 1 175 0 3150 148 20 41 chr6 166968590 166969064 -22310490 + MER44D DNA MER2_type 86 605 0 1686 101 50 47 chr6 166969368 166969436 -22310118 + L1MA3 LINE L1 6007 6073 -232 2205 117 17 0 chr6 166969436 166969735 -22309819 + AluSx SINE Alu 1 304 -8 1686 101 50 47 chr6 166969735 166969964 -22309590 + L1MA3 LINE L1 6073 6305 0 2053 132 3 10 chr6 166970212 166970522 -22309032 + AluSx SINE Alu 1 308 -4 654 148 28 63 chr6 166971508 166971650 -22307904 + AluSg/x SINE Alu 174 310 0 1675 144 0 18 chr6 166971769 166972046 -22307508 + AluJb SINE Alu 12 283 -29 758 101 155 81 chr6 166972046 166972194 -22307360 - AluSg/x SINE Alu -44 266 108 646 78 20 10 chr6 166972209 166972311 -22307243 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 2128 130 0 3 chr6 166972382 166972681 -22306873 + AluSx SINE Alu 1 298 -14 1849 171 0 7 chr6 166973018 166973316 -22306238 - AluJb SINE Alu -16 296 1 2583 53 0 0 chr6 166974768 166975069 -22304485 + AluY SINE Alu 1 301 -10 182 221 144 29 chr6 166975538 166975642 -22303912 - L2 LINE L2 -2540 774 659 498 255 99 16 chr6 166976230 166976422 -22303132 - MIR SINE MIR -41 221 14 1881 126 3 48 chr6 166976452 166976766 -22302788 - AluSx SINE Alu 0 301 1 3180 85 21 36 chr6 166977624 166978072 -22301482 - Charlie3 DNA MER1_type 0 2706 2264 2169 98 51 3 chr6 166978072 166978368 -22301186 - AluSg SINE Alu 0 310 1 3180 85 21 36 chr6 166978368 166978391 -22301163 - Charlie3 DNA MER1_type -442 2264 2242 * 3726 94 25 2 chr6 166978385 166978874 -22300680 - Charlie3 DNA MER1_type -2210 500 1 267 218 32 105 chr6 166979218 166979299 -22300255 - MER5A DNA MER1_type -39 150 79 2457 68 0 19 chr6 166979299 166979606 -22299948 - AluSg SINE Alu -9 301 1 267 218 32 105 chr6 166979606 166979648 -22299906 - MER5A DNA MER1_type -110 79 36 244 128 0 0 chr6 166980877 166980916 -22298638 + Alu SINE Alu 134 172 -130 2234 101 0 3 chr6 166981027 166981336 -22298218 + AluSx SINE Alu 1 308 0 2143 92 4 0 chr6 166981694 166981965 -22297589 + AluSx SINE Alu 23 294 -18 2178 123 0 0 chr6 166982327 166982620 -22296934 + AluSq SINE Alu 1 293 -20 2162 121 0 10 chr6 166983146 166983460 -22296094 + AluSx SINE Alu 1 311 -1 2560 77 3 0 chr6 166983573 166983885 -22295669 - AluSp SINE Alu 0 313 1 258 32 0 0 chr6 166983895 166983926 -22295628 + (A)n Simple_repeat Simple_repeat 1 31 0 529 275 108 30 chr6 166984056 166984351 -22295203 + L1ME LINE L1 5505 5822 -299 2259 125 0 0 chr6 166984442 166984754 -22294800 + AluSx SINE Alu 1 312 0 2072 123 0 26 chr6 166986266 166986574 -22292980 - AluSx SINE Alu -12 300 1 1685 164 31 17 chr6 166987038 166987325 -22292229 + AluJb SINE Alu 1 291 -21 361 273 182 55 chr6 166987420 166987640 -22291914 + MIR SINE MIR 14 261 -1 2096 98 0 11 chr6 166987641 166987918 -22291636 + AluSq SINE Alu 1 274 -39 2070 136 3 3 chr6 166987920 166988214 -22291340 + AluSx SINE Alu 1 294 -18 316 109 0 0 chr6 166988316 166988362 -22291192 + MADE1 DNA Mariner 1 46 -34 1664 152 69 17 chr6 166988393 166988683 -22290871 - AluJo SINE Alu -7 305 1 409 138 17 43 chr6 166988689 166988805 -22290749 + CT-rich Low_complexity Low_complexity 2 114 0 889 120 0 16 chr6 166988812 166988937 -22290617 - AluJb SINE Alu -187 125 3 2469 73 7 0 chr6 166989018 166989320 -22290234 - AluSp SINE Alu -9 304 1 1952 119 0 47 chr6 166991076 166991394 -22288160 + AluSx SINE Alu 1 303 -9 383 335 98 23 chr6 166991811 166992026 -22287528 + MIR SINE MIR 5 235 -27 832 182 0 0 chr6 166992086 166992218 -22287336 + FLAM_A SINE Alu 1 132 -1 1853 128 21 3 chr6 166994426 166994716 -22284838 - AluJb SINE Alu -12 300 6 1911 133 0 32 chr6 166994788 166995097 -22284457 - AluJb SINE Alu -13 299 1 2152 112 0 10 chr6 166997841 166998153 -22281401 + AluSx SINE Alu 3 311 -1 1822 170 0 19 chr6 166998279 166998591 -22280963 + AluJo SINE Alu 1 306 -6 2052 137 0 0 chr6 166998624 166998930 -22280624 + AluSx SINE Alu 1 306 -6 1297 146 31 18 chr6 167000043 167000269 -22279285 - MER30 DNA MER1_type -1 229 1 2127 123 0 3 chr6 167000852 167001160 -22278394 - AluSx SINE Alu -5 307 1 2027 107 27 0 chr6 167004458 167004756 -22274798 - AluSg SINE Alu -4 306 1 1775 133 68 0 chr6 167005733 167006011 -22273543 + AluSx SINE Alu 1 297 -15 2208 95 3 7 chr6 167006631 167006936 -22272618 - AluSx SINE Alu -8 304 1 625 190 69 0 chr6 167006943 167007059 -22272495 - AluJb SINE Alu -183 129 6 2261 88 3 0 chr6 167007289 167007586 -22271968 + AluSq SINE Alu 1 298 -15 2006 107 7 0 chr6 167008645 167008949 -22270605 - AluJb SINE Alu 0 306 1 252 0 0 0 chr6 167009005 167009033 -22270521 + (A)n Simple_repeat Simple_repeat 1 28 0 194 290 0 97 chr6 167009612 167009705 -22269849 + L2 LINE L2 2599 2682 -632 2003 125 3 0 chr6 167009720 167010015 -22269539 + AluSx SINE Alu 1 296 -16 1878 227 94 25 chr6 167010147 167010627 -22268927 - LTR40a LTR ERVL 0 519 7 342 300 55 20 chr6 167010670 167010870 -22268684 + L1ME LINE L1 5487 5693 -428 4474 49 68 139 chr6 167010871 167011612 -22267942 + LTR12 LTR ERV1 1 688 0 5622 102 53 0 chr6 167011612 167012397 -22267157 + HERV9 LTR ERV1 1 827 -7572 * 41293 72 5 6 chr6 167012395 167017647 -22261907 + HERV9 LTR ERV1 3149 8399 0 4942 65 1 130 chr6 167017647 167018437 -22261117 + LTR12 LTR ERV1 1 688 0 2292 189 58 77 chr6 167018714 167019338 -22260216 - LTR10E LTR ERV1 -21 612 1 1447 259 72 12 chr6 167019374 167019791 -22259763 + LTR47B LTR ERVL 2 443 0 376 334 40 107 chr6 167019969 167020100 -22259454 + L2 LINE L2 210 348 -2966 2161 88 17 0 chr6 167020100 167020394 -22259160 - AluSc SINE Alu -10 299 1 376 334 40 107 chr6 167020394 167020609 -22258945 + L2 LINE L2 348 500 -2814 2108 117 0 0 chr6 167020609 167020909 -22258645 - AluSq SINE Alu -13 300 1 376 334 40 107 chr6 167020909 167021178 -22258376 + L2 LINE L2 500 785 -2529 541 70 58 23 chr6 167021271 167021357 -22258197 - L1MB3 LINE L1 -3 6180 6092 12644 119 3 4 chr6 167021364 167023210 -22256344 + HERVK LTR ERVK 5533 7242 -1 3606 186 45 49 chr6 167023210 167024183 -22255371 + LTR5 LTR ERVK 1 969 0 795 80 0 0 chr6 167024183 167024283 -22255271 - AluS SINE Alu -212 101 2 741 302 163 36 chr6 167024284 167024936 -22254618 + L2 LINE L2 2032 2811 -503 1839 128 17 10 chr6 167024936 167025232 -22254322 + AluSx SINE Alu 1 298 -14 741 302 163 36 chr6 167025232 167025400 -22254154 + L2 LINE L2 2811 2956 -358 747 108 0 0 chr6 167025532 167025634 -22253920 - AluJb SINE Alu -5 307 206 850 175 0 75 chr6 167026017 167026077 -22253477 - MER2 DNA MER2_type -135 210 147 1834 162 154 74 chr6 167026077 167026409 -22253145 + MER6A DNA MER2_type 1 398 -467 1986 118 0 4 chr6 167026409 167026689 -22252865 - AluSx SINE Alu -21 291 13 1834 162 154 74 chr6 167026689 167026913 -22252641 + MER6A DNA MER2_type 398 602 -3 850 175 0 75 chr6 167026913 167027052 -22252502 - MER2 DNA MER2_type -198 147 26 225 303 0 26 chr6 167027088 167027164 -22252390 - MIR SINE MIR -109 153 80 234 0 0 0 chr6 167027466 167027492 -22252062 + (CCG)n Simple_repeat Simple_repeat 2 27 0 24 53 0 0 chr6 167027602 167027640 -22251914 + GC_rich Low_complexity Low_complexity 1 38 0 213 94 0 0 chr6 167027661 167027693 -22251861 + (CGG)n Simple_repeat Simple_repeat 3 34 0 241 231 8 68 chr6 167028741 167028858 -22250696 + CT-rich Low_complexity Low_complexity 3 112 0 1214 202 25 7 chr6 167028924 167029206 -22250348 - AluJb SINE Alu 0 312 26 363 326 109 11 chr6 167029311 167029495 -22250059 + L2 LINE L2 3109 3310 -3 2307 82 0 7 chr6 167029536 167029842 -22249712 - AluSx SINE Alu -6 306 3 427 273 28 35 chr6 167029940 167030083 -22249471 + MIR SINE MIR 119 260 -2 2302 74 3 0 chr6 167030084 167030380 -22249174 - AluSg SINE Alu -12 298 2 556 165 16 16 chr6 167030403 167030524 -22249030 - MER58 DNA MER1_type 0 2420 2300 1643 147 21 14 chr6 167030525 167030804 -22248750 + AluJb SINE Alu 1 281 -31 555 82 61 0 chr6 167030808 167030906 -22248648 + Tigger1 DNA MER2_type 2211 2314 -104 2849 58 8 3 chr6 167030906 167031271 -22248283 - L1PA8 LINE L1 -1 6171 5805 899 141 0 0 chr6 167031272 167031400 -22248154 - FLAM_C SINE Alu -4 129 2 1456 91 0 0 chr6 167031627 167031814 -22247740 - AluSx SINE Alu -125 187 1 1090 153 11 0 chr6 167032196 167032372 -22247182 - Tigger1 DNA MER2_type 0 2418 2241 1921 111 0 30 chr6 167032375 167032692 -22246862 + AluSg SINE Alu 1 310 0 268 134 45 50 chr6 167032693 167032872 -22246682 + (TA)n Simple_repeat Simple_repeat 2 179 0 1498 133 111 92 chr6 167032908 167033240 -22246314 - Tigger1 DNA MER2_type -159 2259 1918 2235 89 0 7 chr6 167033240 167033543 -22246011 - AluSg SINE Alu -6 304 4 1498 133 111 92 chr6 167033543 167033578 -22245976 - Tigger1 DNA MER2_type -500 1918 1885 2172 68 7 0 chr6 167033578 167033920 -22245634 - AluSg SINE Alu 0 344 1 3617 131 75 3 chr6 167033921 167034538 -22245016 - Tigger1 DNA MER2_type -1757 661 1 971 104 0 15 chr6 167034571 167034706 -22244848 - FLAM_C SINE Alu 0 133 1 2141 102 0 0 chr6 167034779 167035074 -22244480 + AluSc SINE Alu 1 295 -14 225 188 266 0 chr6 167035228 167035292 -22244262 - MIR SINE MIR -111 151 71 297 288 38 69 chr6 167035330 167035423 -22244131 - MER5A DNA MER1_type -21 168 81 2029 113 3 10 chr6 167035423 167035715 -22243839 - AluSx SINE Alu -22 290 1 297 288 38 69 chr6 167035715 167035781 -22243773 - MER5A DNA MER1_type -108 81 14 1965 100 47 0 chr6 167036511 167036790 -22242764 - AluSg SINE Alu -16 294 3 1770 153 23 17 chr6 167036792 167037093 -22242461 - AluJo SINE Alu -9 303 1 1827 161 3 0 chr6 167038798 167039096 -22240458 - AluJb SINE Alu -13 299 1 495 186 85 85 chr6 167039930 167039986 -22239568 - MLT1J LTR MaLR -22 489 434 2338 116 0 0 chr6 167039986 167040296 -22239258 - AluSq SINE Alu -3 310 1 495 186 85 85 chr6 167040296 167040416 -22239138 - MLT1J LTR MaLR -76 435 313 1289 171 82 0 chr6 167040417 167040662 -22238892 - MER92B LTR ERV1 -371 265 1 686 259 89 49 chr6 167040662 167040905 -22238649 - MLT1J LTR MaLR -258 253 1 2241 91 17 3 chr6 167041036 167041332 -22238222 - AluSx SINE Alu -12 300 1 2103 132 3 0 chr6 167041369 167041673 -22237881 - AluSx SINE Alu -7 305 1 6075 157 23 4 chr6 167041711 167043123 -22236431 - L1MA6 LINE L1 -2 6298 4861 452 259 176 41 chr6 167043283 167043573 -22235981 + L2 LINE L2 2984 3312 -1 2290 109 0 0 chr6 167044782 167045075 -22234479 - AluSg SINE Alu -17 293 1 843 136 0 0 chr6 167045768 167045886 -22233668 + AluJo/FLAM SINE Alu 1 118 -184 2555 60 3 0 chr6 167045886 167046184 -22233370 - AluY SINE Alu -12 299 1 23 54 0 0 chr6 167046193 167046230 -22233324 + AT_rich Low_complexity Low_complexity 1 37 0 2277 105 3 0 chr6 167046944 167047240 -22232314 - AluSx SINE Alu -15 297 1 27 0 0 0 chr6 167047560 167047587 -22231967 + AT_rich Low_complexity Low_complexity 1 27 0 1939 163 0 10 chr6 167047895 167048208 -22231346 + AluJo SINE Alu 1 310 -2 1790 156 16 32 chr6 167048452 167048766 -22230788 + AluJo SINE Alu 1 309 -3 2090 132 7 3 chr6 167049205 167049501 -22230053 - AluSx SINE Alu -15 297 1 408 275 194 51 chr6 167049834 167050267 -22229287 + L1ME LINE L1 3455 3949 -2197 838 260 100 52 chr6 167050289 167050637 -22228917 + L1ME LINE L1 4471 4801 -1345 2340 78 0 7 chr6 167050637 167050931 -22228623 + AluSx SINE Alu 1 292 -20 838 260 100 52 chr6 167050931 167051357 -22228197 + L1ME LINE L1 4801 5328 -818 340 256 166 20 chr6 167051437 167051619 -22227935 + L1ME LINE L1 5453 5663 -507 2274 116 3 0 chr6 167051619 167051920 -22227634 + AluSp SINE Alu 1 302 -11 340 256 166 20 chr6 167051920 167051932 -22227622 + L1ME LINE L1 5663 5672 -498 1462 94 62 5 chr6 167052049 167052273 -22227281 - MER50-int LTR ERV1 -87 7118 6882 274 56 28 0 chr6 167052270 167052306 -22227248 - MER50-int LTR ERV1 -7165 40 4 * 1316 146 0 59 chr6 167052308 167052561 -22226993 - MER50 LTR ERV1 0 734 497 2411 94 0 0 chr6 167052721 167053028 -22226526 - AluSx SINE Alu -3 309 3 202 139 69 0 chr6 167053131 167053203 -22226351 + (TA)n Simple_repeat Simple_repeat 1 77 0 214 105 35 35 chr6 167053268 167053325 -22226229 + (TTATA)n Simple_repeat Simple_repeat 3 59 0 2074 139 0 0 chr6 167054814 167055109 -22224445 - AluSx SINE Alu -17 295 1 229 267 53 0 chr6 167055617 167055692 -22223862 + MIR SINE MIR 111 189 -73 1612 136 36 4 chr6 167055706 167055957 -22223597 + AluJb SINE Alu 1 259 -53 396 286 71 41 chr6 167057650 167057846 -22221708 - MIR SINE MIR 0 262 61 2209 75 3 34 chr6 167058574 167058868 -22220686 + AluY SINE Alu 4 288 -23 2339 90 3 0 chr6 167059599 167059888 -22219666 - AluSp SINE Alu -23 290 1 678 128 0 0 chr6 167060572 167060695 -22218859 - AluSc SINE Alu 0 308 186 2292 97 3 0 chr6 167061436 167061724 -22217830 + AluSg SINE Alu 1 289 -21 206 85 68 0 chr6 167061727 167061786 -22217768 + (TA)n Simple_repeat Simple_repeat 1 63 0 180 333 14 0 chr6 167062342 167062411 -22217143 + L2 LINE L2 2640 2709 -605 2596 58 3 0 chr6 167062478 167062786 -22216768 + AluY SINE Alu 1 309 -2 246 283 33 22 chr6 167062842 167062934 -22216620 - Charlie7 DNA MER1_type -1021 1591 1499 1782 147 7 37 chr6 167062936 167063236 -22216318 + AluJb SINE Alu 6 296 -16 254 196 0 0 chr6 167063275 167063321 -22216233 - Charlie7 DNA MER1_type -2258 354 309 923 81 0 8 chr6 167064950 167065073 -22214481 - AluSg/x SINE Alu 0 312 191 1815 154 0 49 chr6 167065152 167065477 -22214077 - AluJo SINE Alu -3 309 1 183 213 64 0 chr6 167066211 167066258 -22213296 + MIR SINE MIR 117 166 -96 2195 112 20 0 chr6 167066773 167067076 -22212478 - AluSg SINE Alu -1 309 1 466 155 0 24 chr6 167069142 167069226 -22210328 - Tigger5 DNA MER2_type 0 2323 2242 * 1303 240 37 10 chr6 167069214 167069510 -22210044 - Tigger5 DNA MER2_type -2019 304 1 203 339 0 0 chr6 167069576 167069641 -22209913 + L2 LINE L2 3188 3252 -20 1915 142 0 35 chr6 167069642 167069952 -22209602 - AluSx SINE Alu -13 299 1 2145 105 13 32 chr6 167070085 167070398 -22209156 + AluSq SINE Alu 1 307 -6 1065 193 184 8 chr6 167071044 167071288 -22208266 - AluJo SINE Alu -15 287 1 2311 99 0 13 chr6 167071641 167071944 -22207610 + AluSq SINE Alu 1 299 -14 2380 68 31 0 chr6 167072026 167072320 -22207234 + AluSp SINE Alu 1 303 -10 180 253 222 80 chr6 167072335 167072497 -22207057 + MIR SINE MIR 71 255 -7 21 0 0 0 chr6 167073023 167073044 -22206510 + AT_rich Low_complexity Low_complexity 1 21 0 2779 113 9 39 chr6 167073169 167073400 -22206154 - MSTA LTR MaLR 0 428 215 2592 85 8 3 chr6 167073400 167073752 -22205802 - THE1A LTR MaLR -1 354 1 2779 113 9 39 chr6 167073752 167073961 -22205593 - MSTA LTR MaLR -213 215 1 1835 146 32 32 chr6 167074745 167074912 -22204642 - AluJb SINE Alu -3 309 140 2369 57 0 17 chr6 167074912 167075209 -22204345 - AluY SINE Alu -19 292 1 1835 146 32 32 chr6 167075209 167075350 -22204204 - AluJb SINE Alu -171 141 1 1774 168 0 24 chr6 167075456 167075595 -22203959 + AluJb SINE Alu 1 142 -170 2085 118 10 7 chr6 167075595 167075892 -22203662 + AluSx SINE Alu 3 300 -12 1774 168 0 24 chr6 167075892 167076049 -22203505 + AluJb SINE Alu 142 290 -22 1428 182 4 4 chr6 167076161 167076397 -22203157 + AluJb SINE Alu 42 277 -35 1419 110 40 31 chr6 167076892 167077120 -22202434 - MER30 DNA MER1_type 0 230 1 2118 120 3 22 chr6 167077330 167077646 -22201908 - AluSx SINE Alu 0 312 3 2128 89 6 83 chr6 167078037 167078373 -22201181 - AluSq SINE Alu -3 310 1 2469 80 6 0 chr6 167078494 167078805 -22200749 - AluSp SINE Alu 0 313 1 1689 113 128 0 chr6 167078986 167079252 -22200302 + AluSx SINE Alu 1 300 -2 2293 107 10 0 chr6 167079809 167080107 -22199447 - AluSx SINE Alu -11 301 1 207 342 13 0 chr6 167080535 167080614 -22198940 - MIR SINE MIR -63 145 66 575 177 24 40 chr6 167080631 167080754 -22198800 - MLT1F1 LTR MaLR 0 567 447 249 94 0 0 chr6 167080754 167080786 -22198768 - MSTA LTR MaLR 0 426 395 820 143 53 0 chr6 167080786 167080919 -22198635 + AluSg/x SINE Alu 162 301 -11 2174 159 28 30 chr6 167080919 167080969 -22198585 - MSTA LTR MaLR -34 394 345 2231 117 0 3 chr6 167080969 167081269 -22198285 - AluSx SINE Alu -13 299 1 2174 159 28 30 chr6 167081269 167081613 -22197941 - MSTA LTR MaLR -83 345 1 1929 246 37 2 chr6 167081617 167082048 -22197506 - MLT1F1 LTR MaLR -120 447 2 33 43 0 0 chr6 167082263 167082310 -22197244 + AT_rich Low_complexity Low_complexity 1 47 0 1280 155 0 143 chr6 167082507 167082864 -22196690 - AluJo SINE Alu 0 310 1 2353 75 17 3 chr6 167082866 167083160 -22196394 - AluSp SINE Alu -15 298 1 1139 81 0 0 chr6 167083160 167083296 -22196258 - AluSq/x SINE Alu -176 136 1 856 155 77 26 chr6 167083306 167083461 -22196093 - FRAM SINE Alu -21 155 1 30 0 0 0 chr6 167084316 167084346 -22195208 + AT_rich Low_complexity Low_complexity 1 30 0 2383 84 3 3 chr6 167084392 167084688 -22194866 - AluSx SINE Alu -16 296 1 228 122 24 0 chr6 167084688 167084729 -22194825 + HsTC2 DNA Tc2 1817 1858 -40 281 93 19 0 chr6 167085254 167085308 -22194246 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 613 116 0 0 chr6 167085325 167085411 -22194143 - AluS SINE Alu -224 88 3 633 170 0 0 chr6 167085964 167086070 -22193484 - AluSx SINE Alu -11 299 194 700 81 0 0 chr6 167086072 167086159 -22193395 - AluSx SINE Alu -167 145 59 215 0 67 0 chr6 167086306 167086336 -22193218 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2260 92 18 0 chr6 167086338 167086621 -22192933 - AluSq SINE Alu -25 288 1 2268 128 0 0 chr6 167087238 167087550 -22192004 - AluSx SINE Alu 0 312 1 949 153 74 0 chr6 167087654 167087843 -22191711 + L1MA8 LINE L1 6083 6285 -6 21 36 0 0 chr6 167087874 167087902 -22191652 + AT_rich Low_complexity Low_complexity 1 28 0 1988 102 63 14 chr6 167088218 167088503 -22191051 + AluSg SINE Alu 1 299 -11 429 129 0 0 chr6 167089526 167089588 -22189966 - MSTA LTR MaLR 0 428 367 2425 83 0 7 chr6 167089711 167090013 -22189541 + AluSg SINE Alu 1 300 -10 2343 110 131 8 chr6 167090469 167090850 -22188704 - MSTA LTR MaLR 0 428 1 1963 130 10 23 chr6 167090878 167091186 -22188368 + AluSx SINE Alu 1 304 -8 480 310 178 29 chr6 167091776 167092668 -22186886 + L2 LINE L2 2225 3313 0 2063 92 3 26 chr6 167092812 167093144 -22186410 - AluSx SINE Alu 0 312 5 2317 73 7 3 chr6 167093177 167093478 -22186076 - AluSq SINE Alu -8 305 4 2172 68 7 0 chr6 167093513 167093855 -22185699 - AluSg SINE Alu 0 344 1 3617 131 75 3 chr6 167093856 167094473 -22185081 - Tigger1 DNA MER2_type -1757 661 1 971 104 0 15 chr6 167094506 167094641 -22184913 - FLAM_C SINE Alu 0 133 1 1940 129 0 0 chr6 167094714 167095009 -22184545 + AluSc SINE Alu 1 295 -14 225 188 266 0 chr6 167095163 167095227 -22184327 - MIR SINE MIR -111 151 71 297 288 38 69 chr6 167095265 167095358 -22184196 - MER5A DNA MER1_type -21 168 81 2029 113 3 10 chr6 167095358 167095650 -22183904 - AluSx SINE Alu -22 290 1 297 288 38 69 chr6 167095650 167095716 -22183838 - MER5A DNA MER1_type -108 81 14 1978 97 47 0 chr6 167096446 167096725 -22182829 - AluSg SINE Alu -16 294 3 1770 153 23 17 chr6 167096727 167097028 -22182526 - AluJo SINE Alu -9 303 1 1827 161 3 0 chr6 167098733 167099031 -22180523 - AluJb SINE Alu -13 299 1 471 192 85 85 chr6 167099865 167099921 -22179633 - MLT1J LTR MaLR -22 489 434 2216 116 0 0 chr6 167099921 167100231 -22179323 - AluSq SINE Alu -3 310 1 471 192 85 85 chr6 167100231 167100351 -22179203 - MLT1J LTR MaLR -76 435 313 1289 171 82 0 chr6 167100352 167100597 -22178957 - MER92B LTR ERV1 -371 265 1 689 259 89 49 chr6 167100597 167100840 -22178714 - MLT1J LTR MaLR -258 253 1 2114 91 17 3 chr6 167100971 167101267 -22178287 - AluSx SINE Alu -12 300 1 1983 132 3 0 chr6 167101304 167101608 -22177946 - AluSx SINE Alu -7 305 1 6044 157 23 4 chr6 167101646 167103058 -22176496 - L1MA6 LINE L1 -2 6298 4861 561 261 191 46 chr6 167103179 167103508 -22176046 + L2 LINE L2 2936 3312 -1 2161 109 0 0 chr6 167104717 167105010 -22174544 - AluSg SINE Alu -17 293 1 260 158 0 0 chr6 167105703 167105741 -22173813 + Alu SINE Alu 1 38 -262 1931 146 7 0 chr6 167105953 167106262 -22173292 - AluJb SINE Alu -1 311 1 21 0 0 0 chr6 167106352 167106373 -22173181 + AT_rich Low_complexity Low_complexity 1 21 0 185 352 7 62 chr6 167106717 167106862 -22172692 + L3b LINE CR1 1233 1369 -214 2184 122 0 0 chr6 167107161 167107473 -22172081 - AluSx SINE Alu 0 312 1 2245 84 13 0 chr6 167107819 167108118 -22171436 - AluSg1 SINE Alu -6 303 1 1325 188 63 105 chr6 167108289 167108413 -22171141 + Charlie4a DNA MER1_type 24 152 -1809 1805 153 10 3 chr6 167108413 167108708 -22170846 - AluJb SINE Alu -15 297 1 1325 188 63 105 chr6 167108708 167108945 -22170609 + Charlie4a DNA MER1_type 152 361 -1600 1843 115 68 0 chr6 167108945 167109223 -22170331 + AluSq SINE Alu 1 297 -16 1325 188 63 105 chr6 167109223 167109366 -22170188 + Charlie4a DNA MER1_type 361 508 0 2213 101 13 0 chr6 167110106 167110414 -22169140 - AluSx SINE Alu 0 312 1 1613 182 3 22 chr6 167110487 167110800 -22168754 - AluJb SINE Alu -5 307 1 1019 139 5 53 chr6 167111099 167111308 -22168246 + AluJo SINE Alu 114 312 0 486 284 37 19 chr6 167111309 167111471 -22168083 + MER5A DNA MER1_type 18 182 -7 262 313 0 12 chr6 167111483 167111563 -22167991 + L2 LINE L2 3234 3312 -1 196 281 24 73 chr6 167111870 167111952 -22167602 - L2 LINE L2 -6 3266 3189 2290 91 0 3 chr6 167112127 167112436 -22167118 - AluSc SINE Alu -1 308 1 1826 106 0 19 chr6 167113983 167114247 -22165307 + AluSx SINE Alu 49 307 -5 1636 153 24 17 chr6 167114560 167114854 -22164700 - AluJb SINE Alu -16 296 1 626 299 20 59 chr6 167115092 167115363 -22164191 - MIR SINE MIR -2 260 3 1973 142 0 13 chr6 167115954 167116265 -22163289 + AluSx SINE Alu 1 307 -5 218 347 169 25 chr6 167116488 167116730 -22162824 - L2 LINE L2 -20 3252 2976 819 238 70 5 chr6 167116856 167117070 -22162484 + MIR SINE MIR 34 261 -1 187 378 74 15 chr6 167117172 167117307 -22162247 - L2 LINE L2 -2607 707 565 2371 39 0 0 chr6 167118100 167118422 -22161132 + AluY SINE Alu 1 322 0 21 0 0 0 chr6 167118944 167118965 -22160589 + AT_rich Low_complexity Low_complexity 1 21 0 1105 141 0 18 chr6 167118984 167119154 -22160400 + FAM SINE Alu 1 167 -8 2398 186 71 31 chr6 167119317 167119809 -22159745 + L1MB4 LINE L1 5593 6109 -71 1917 117 21 0 chr6 167119809 167120100 -22159454 + AluSq SINE Alu 1 297 -16 2398 186 71 31 chr6 167120100 167120129 -22159425 + L1MB4 LINE L1 6109 6135 -45 943 163 0 0 chr6 167120129 167120282 -22159272 + FRAM SINE Alu 1 146 -30 213 39 0 0 chr6 167120285 167120311 -22159243 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 415 278 78 54 chr6 167120573 167120683 -22158871 + MIR SINE MIR 34 140 -122 1691 174 0 3 chr6 167120683 167120965 -22158589 + AluJo SINE Alu 1 281 -31 219 69 0 0 chr6 167120968 167120997 -22158557 + (TAA)n Simple_repeat Simple_repeat 1 29 0 415 278 78 54 chr6 167120997 167121087 -22158467 + MIR SINE MIR 141 243 -19 2273 94 0 0 chr6 167121148 167121445 -22158109 - AluSx SINE Alu -15 297 1 1097 131 0 6 chr6 167122296 167122464 -22157090 + L1MB3 LINE L1 6007 6173 -10 1312 161 0 5 chr6 167122491 167122702 -22156852 - AluJo SINE Alu -102 210 1 238 244 24 171 chr6 167122804 167122886 -22156668 + MIR SINE MIR 44 114 -94 1052 94 0 0 chr6 167122886 167123024 -22156530 - AluSq/x SINE Alu -175 138 1 420 325 91 9 chr6 167123098 167123329 -22156225 - MIR SINE MIR 0 262 13 2105 116 0 0 chr6 167124489 167124783 -22154771 - AluSx SINE Alu -18 294 1 1324 265 94 48 chr6 167124903 167125469 -22154085 - MLT1G1 LTR MaLR 0 595 4 1670 163 49 0 chr6 167125612 167125900 -22153654 + AluJo SINE Alu 1 302 -10 912 134 0 0 chr6 167126143 167126277 -22153277 + AluSq/x SINE Alu 1 134 -178 2273 80 0 16 chr6 167126278 167126592 -22152962 + AluY SINE Alu 1 309 -2 3410 115 27 127 chr6 167126593 167127026 -22152528 + Tigger3(Golem) DNA MER2_type 2393 2729 -299 2124 120 0 0 chr6 167127026 167127326 -22152228 - AluSq SINE Alu -13 300 1 3410 115 27 127 chr6 167127326 167127599 -22151955 + Tigger3(Golem) DNA MER2_type 2729 3028 0 2204 75 4 0 chr6 167127722 167128025 -22151529 + AluY SINE Alu 1 304 0 229 180 158 0 chr6 167128447 167128514 -22151040 + MIR SINE MIR 81 145 -63 341 343 59 29 chr6 167129031 167129235 -22150319 + L3 LINE CR1 1359 1568 -9 309 259 25 0 chr6 167129806 167129887 -22149667 + L1MC4 LINE L1 6609 6691 -1351 1967 143 0 10 chr6 167129993 167130301 -22149253 - AluJb SINE Alu -7 305 1 327 361 49 7 chr6 167130356 167130500 -22149054 + MLT1K LTR MaLR 14 163 -425 2096 149 35 16 chr6 167130505 167130873 -22148681 + THE1C LTR MaLR 1 375 0 1949 95 18 0 chr6 167130873 167131156 -22148398 + THE1C-int LTR MaLR 1 288 -1292 1976 152 110 33 chr6 167131183 167131611 -22147943 + LTR10A LTR ERV1 82 542 -67 4987 136 33 51 chr6 167131621 167132038 -22147516 + THE1C-int LTR MaLR 283 679 -901 216 0 0 0 chr6 167132038 167132062 -22147492 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4987 136 33 51 chr6 167132062 167132473 -22147081 + THE1C-int LTR MaLR 679 1096 -484 1539 159 110 65 chr6 167132473 167132901 -22146653 + LTR7 LTR ERV1 1 447 -3 3443 90 11 11 chr6 167132902 167133379 -22146175 + THE1C-int LTR MaLR 1098 1574 -6 2015 136 29 32 chr6 167133381 167133757 -22145797 + THE1C LTR MaLR 1 375 0 1008 284 39 47 chr6 167133765 167134127 -22145427 + MLT1K LTR MaLR 205 563 -25 22 0 0 0 chr6 167134324 167134346 -22145208 + AT_rich Low_complexity Low_complexity 1 22 0 186 337 89 77 chr6 167135030 167135119 -22144435 - L2 LINE L2 -575 2739 2646 2321 87 3 0 chr6 167135119 167135428 -22144126 + AluSx SINE Alu 1 310 -2 186 337 89 77 chr6 167135428 167135507 -22144047 - L2 LINE L2 -668 2646 2569 1075 245 74 74 chr6 167135537 167135946 -22143608 + MLT1C LTR MaLR 1 412 -55 2096 154 30 28 chr6 167135946 167136309 -22143245 + THE1B LTR MaLR 1 364 0 1075 245 74 74 chr6 167136309 167136360 -22143194 + MLT1C LTR MaLR 411 461 -6 1632 170 3 17 chr6 167136579 167136905 -22142649 + AluJb SINE Alu 1 312 0 371 274 116 12 chr6 167137019 167137183 -22142371 - MLT1K LTR MaLR -8 580 400 442 334 141 14 chr6 167137184 167137552 -22142002 - L2 LINE L2 -1088 2226 1812 2015 138 0 0 chr6 167137753 167138043 -22141511 + AluSx SINE Alu 3 292 -20 737 230 122 35 chr6 167138140 167138427 -22141127 - MLT1C LTR MaLR 0 467 156 1869 118 0 0 chr6 167138435 167138707 -22140847 - AluSx SINE Alu 0 312 41 474 211 143 8 chr6 167138707 167138840 -22140714 + MLT1C LTR MaLR 25 175 -215 2239 70 7 0 chr6 167138843 167139129 -22140425 + AluSp SINE Alu 1 288 -25 189 0 0 0 chr6 167139231 167139252 -22140302 + (A)n Simple_repeat Simple_repeat 1 21 0 893 156 71 118 chr6 167139281 167139519 -22140035 + MLT1C LTR MaLR 164 467 0 1872 141 0 14 chr6 167140199 167140496 -22139058 + AluSx SINE Alu 1 293 -19 1514 181 101 34 chr6 167140975 167141301 -22138253 - MER7A DNA MER2_type 0 346 1 197 232 14 0 chr6 167141337 167141406 -22138148 + (TA)n Simple_repeat Simple_repeat 1 70 0 317 204 39 87 chr6 167141423 167141526 -22138028 - L1MC4 LINE L1 -1339 6703 6606 211 242 0 16 chr6 167141538 167141600 -22137954 + (TA)n Simple_repeat Simple_repeat 1 61 0 334 210 0 0 chr6 167141667 167141729 -22137825 - MER58C DNA MER1_type -36 179 118 1029 157 75 166 chr6 167141753 167142085 -22137469 + AluJb SINE Alu 1 302 0 1863 91 0 8 chr6 167142098 167142351 -22137203 + AluSx SINE Alu 1 251 -61 196 303 45 34 chr6 167142351 167142430 -22137124 - MIR SINE MIR -65 197 115 1723 137 0 0 chr6 167142432 167142681 -22136873 + AluJo SINE Alu 13 261 -51 281 296 71 74 chr6 167142803 167143114 -22136440 - L2 LINE L2 -5 3267 2958 320 216 80 104 chr6 167143269 167143394 -22136160 + L2 LINE L2 3151 3272 -41 712 254 161 5 chr6 167144339 167144556 -22134998 - MIR SINE MIR -10 252 2 296 266 160 0 chr6 167144774 167144868 -22134686 + L2 LINE L2 3159 3267 -5 280 333 59 7 chr6 167144911 167145046 -22134508 - L2 LINE L2 -12 3301 3160 262 121 17 17 chr6 167145371 167145429 -22134125 + (TA)n Simple_repeat Simple_repeat 1 58 0 2315 68 3 0 chr6 167145498 167145790 -22133764 + AluY SINE Alu 1 293 -18 182 273 156 84 chr6 167145893 167146047 -22133507 - MER5A DNA MER1_type -22 167 3 1846 147 0 16 chr6 167146233 167146539 -22133015 + AluSx SINE Alu 1 301 -11 201 314 0 0 chr6 167146837 167146888 -22132666 - MIR SINE MIR -124 84 34 236 140 40 0 chr6 167146901 167146951 -22132603 + GA-rich Low_complexity Low_complexity 3 54 0 919 211 0 0 chr6 167146954 167147244 -22132310 + AluJb SINE Alu 137 426 0 2413 62 0 34 chr6 167147517 167147839 -22131715 - AluY SINE Alu 0 311 1 257 170 38 0 chr6 167148250 167148303 -22131251 - MER103 DNA DNA -48 118 64 232 137 27 41 chr6 167148520 167148593 -22130961 + (TTA)n Simple_repeat Simple_repeat 1 72 0 2361 63 3 0 chr6 167148671 167148971 -22130583 - AluY SINE Alu -10 301 1 601 302 10 5 chr6 167149151 167149343 -22130211 - L1ME LINE L1 -303 5818 5626 1448 189 116 44 chr6 167149482 167149573 -22129981 - MLT1D LTR MaLR -8 481 398 2075 108 3 3 chr6 167149573 167149868 -22129686 + AluSx SINE Alu 1 295 -17 1448 189 116 44 chr6 167149868 167150226 -22129328 - MLT1D LTR MaLR -91 398 14 1211 303 64 87 chr6 167151292 167151306 -22128248 - L3 LINE CR1 -25 1552 1539 1369 187 134 58 chr6 167151306 167151740 -22127814 - MLT1C LTR MaLR 0 467 1 1211 303 64 87 chr6 167151740 167152082 -22127472 - L3 LINE CR1 -38 1539 1191 1941 127 0 3 chr6 167152082 167152395 -22127159 - AluSx SINE Alu 0 312 1 1211 303 64 87 chr6 167152395 167152913 -22126641 - L3 LINE CR1 -386 1191 696 409 191 78 9 chr6 167153002 167153117 -22126437 - L1ME3A LINE L1 -7 6163 6041 334 225 93 47 chr6 167153145 167153274 -22126280 - MIR SINE MIR -70 192 58 1946 96 0 66 chr6 167153283 167153389 -22126165 + AluSx SINE Alu 9 120 -192 2365 74 0 0 chr6 167153389 167153687 -22125867 - AluY SINE Alu -7 304 7 1946 96 0 66 chr6 167153687 167153883 -22125671 + AluSx SINE Alu 120 291 -21 245 151 0 0 chr6 167153883 167153936 -22125618 + L1MA3 LINE L1 6252 6304 -1 342 322 54 122 chr6 167154045 167154380 -22125174 + L2 LINE L2 2954 3265 -7 301 239 65 87 chr6 167154489 167154627 -22124927 + MER5B DNA MER1_type 4 138 -40 1868 98 4 0 chr6 167154635 167154889 -22124665 + AluSx SINE Alu 1 255 -57 211 280 0 0 chr6 167154905 167154955 -22124599 + MER5A DNA MER1_type 140 189 0 2207 105 0 0 chr6 167155906 167156210 -22123344 - AluSx SINE Alu -8 304 1 2200 110 0 0 chr6 167156792 167157102 -22122452 + AluSx SINE Alu 3 312 0 967 254 33 18 chr6 167157132 167157407 -22122147 + MLT1C LTR MaLR 187 465 -2 204 40 0 0 chr6 167157803 167157828 -22121726 + (T)n Simple_repeat Simple_repeat 1 25 0 198 60 40 40 chr6 167158306 167158356 -22121198 + (TTTTTA)n Simple_repeat Simple_repeat 3 52 0 614 146 9 0 chr6 167158416 167158526 -22121028 + CT-rich Low_complexity Low_complexity 2 112 0 794 147 49 21 chr6 167158535 167158678 -22120876 - AluJb SINE Alu -1 311 165 189 257 27 54 chr6 167158703 167158777 -22120777 - L2 LINE L2 -307 2965 2894 39 22 0 0 chr6 167159519 167159565 -22119989 + AT_rich Low_complexity Low_complexity 1 46 0 1855 146 10 7 chr6 167159895 167160204 -22119350 + AluJb SINE Alu 1 310 -2 2054 101 13 10 chr6 167160302 167160608 -22118946 - AluSx SINE Alu -5 307 1 286 236 25 85 chr6 167160617 167160816 -22118738 + L1ME LINE L1 5634 5820 -301 375 259 24 0 chr6 167160872 167160957 -22118597 + L2 LINE L2 3226 3312 -1 283 138 121 0 chr6 167161142 167161200 -22118354 - MER53 DNA DNA -124 65 1 1775 146 3 7 chr6 167161261 167161549 -22118005 - AluJb SINE Alu -25 287 1 288 212 165 47 chr6 167161647 167161817 -22117737 - L1ME4a LINE L1 -52 6069 5880 2102 122 0 6 chr6 167162223 167162534 -22117020 - AluSx SINE Alu -3 309 1 223 234 0 0 chr6 167162562 167162609 -22116945 - MIR SINE MIR -9 253 207 856 149 0 15 chr6 167162783 167162917 -22116637 - FLAM_C SINE Alu -1 132 1 458 273 98 10 chr6 167162920 167163114 -22116440 - MIR SINE MIR -21 241 31 247 25 50 0 chr6 167163116 167163156 -22116398 + (GA)n Simple_repeat Simple_repeat 1 42 0 1954 109 28 7 chr6 167165478 167165762 -22113792 + AluSx SINE Alu 6 295 -17 527 229 167 29 chr6 167165771 167166046 -22113508 - L1MC5 LINE L1 -48 7913 7601 1848 122 39 138 chr6 167166121 167166245 -22113309 - L1MC3 LINE L1 -959 6826 6691 1553 143 40 4 chr6 167166245 167166524 -22113030 + AluSx SINE Alu 24 311 0 1848 122 39 138 chr6 167166524 167166839 -22112715 - L1MC3 LINE L1 -1094 6691 6429 1140 176 14 0 chr6 167166846 167167056 -22112498 - AluJo SINE Alu -14 298 86 1939 117 7 20 chr6 167167148 167167448 -22112106 - AluSq SINE Alu -9 304 9 647 269 52 21 chr6 167167682 167167875 -22111679 - LTR67 LTR ERVL -336 221 23 2323 99 0 0 chr6 167167898 167168210 -22111344 + AluSx SINE Alu 1 312 0 26 30 0 0 chr6 167168465 167168498 -22111056 + AT_rich Low_complexity Low_complexity 1 33 0 2230 100 0 0 chr6 167168549 167168849 -22110705 + AluY SINE Alu 1 300 -11 1277 270 40 67 chr6 167168914 167168971 -22110583 - L1MC4a LINE L1 -1800 6008 5951 2298 88 0 0 chr6 167168971 167169268 -22110286 + AluSc SINE Alu 1 297 -12 1277 270 40 67 chr6 167169268 167169830 -22109724 - L1MC4a LINE L1 -1857 5951 5411 2071 98 0 3 chr6 167169830 167170142 -22109412 + AluSx SINE Alu 1 311 0 1277 270 40 67 chr6 167170142 167170294 -22109260 - L1MC4a LINE L1 -2397 5411 5256 223 339 152 0 chr6 167170296 167170518 -22109036 - L2 LINE L2 -322 2991 2729 1587 246 140 66 chr6 167170529 167171218 -22108336 - L2 LINE L2 -862 2452 1693 2123 114 0 29 chr6 167171218 167171534 -22108020 - AluSx SINE Alu -5 307 1 1587 246 140 66 chr6 167171534 167171649 -22107905 - L2 LINE L2 -1621 1693 1588 6644 86 1 1 chr6 167171960 167172900 -22106654 + L1PB1 LINE L1 5210 6149 -2 2858 146 38 11 chr6 167172939 167173461 -22106093 - L1MB4 LINE L1 -13 6167 5632 235 185 49 111 chr6 167174549 167174630 -22104924 - AluJ/FRAM SINE Alu -6 296 221 272 179 63 0 chr6 167174716 167174811 -22104743 + CT-rich Low_complexity Low_complexity 3 103 0 583 155 70 47 chr6 167174813 167174942 -22104612 - FLAM_A SINE Alu 0 133 2 741 167 24 12 chr6 167174945 167175113 -22104441 + CT-rich Low_complexity Low_complexity 1 170 0 313 98 0 0 chr6 167175113 167175154 -22104400 + (TCCCC)n Simple_repeat Simple_repeat 3 43 0 636 185 22 44 chr6 167175154 167175358 -22104196 - FLAM_A SINE Alu 0 202 2 260 149 0 21 chr6 167175467 167175514 -22104040 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 1053 97 0 0 chr6 167175514 167175659 -22103895 - AluSg/x SINE Alu 0 312 168 2278 92 0 16 chr6 167175765 167176079 -22103475 + AluSx SINE Alu 1 309 -3 1187 48 0 0 chr6 167176438 167176583 -22102971 + L1PA3 LINE L1 6011 6155 0 802 153 0 0 chr6 167176734 167176852 -22102702 + FLAM_C SINE Alu 1 118 -15 275 243 72 0 chr6 167177071 167177182 -22102372 - L1ME4a LINE L1 -6 6115 5997 742 164 0 0 chr6 167177198 167177308 -22102246 + FLAM_A SINE Alu 1 110 -32 682 233 144 30 chr6 167177592 167177762 -22101792 + MER46C DNA MER2_type 37 186 -152 2193 100 0 16 chr6 167177762 167178071 -22101483 - AluSx SINE Alu -8 304 1 682 233 144 30 chr6 167178071 167178171 -22101383 + MER46C DNA MER2_type 186 338 0 1553 97 0 18 chr6 167178476 167178703 -22100851 - AluSg/x SINE Alu -7 303 81 259 271 14 0 chr6 167178738 167178808 -22100746 - MLT1K LTR MaLR -12 576 506 299 269 93 60 chr6 167178845 167179027 -22100527 - MLT1K LTR MaLR -173 415 228 21 0 0 0 chr6 167179204 167179225 -22100329 + AT_rich Low_complexity Low_complexity 1 21 0 1782 147 0 0 chr6 167179768 167180041 -22099513 + AluSx SINE Alu 2 274 -38 234 0 0 0 chr6 167180050 167180076 -22099478 + (TAA)n Simple_repeat Simple_repeat 2 27 0 476 307 57 21 chr6 167180607 167180799 -22098755 - MIR SINE MIR -40 222 24 727 172 0 0 chr6 167180801 167180923 -22098631 + FLAM_A SINE Alu 4 125 -8 2109 108 0 3 chr6 167181069 167181365 -22098189 + AluSx SINE Alu 3 297 -15 1024 269 127 50 chr6 167181521 167181985 -22097569 + MLT1J LTR MaLR 6 505 -6 828 107 61 0 chr6 167182269 167182392 -22097162 + AluJb SINE Alu 156 289 -23 294 73 0 0 chr6 167182392 167182433 -22097121 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 574 257 88 91 chr6 167182576 167183064 -22096490 - MLT1K LTR MaLR -6 582 26 1995 94 3 24 chr6 167183228 167183525 -22096029 - AluSx SINE Alu -13 299 9 1427 178 149 20 chr6 167183548 167183890 -22095664 - MLT1B LTR MaLR 0 390 5 2548 131 40 61 chr6 167184023 167184524 -22095030 - LTR54 LTR ERV1 0 510 19 2149 107 0 0 chr6 167184524 167184824 -22094730 - AluSx SINE Alu -12 300 1 2548 131 40 61 chr6 167184824 167184843 -22094711 - LTR54 LTR ERV1 -491 19 1 1338 175 27 27 chr6 167185543 167185806 -22093748 + AluJo SINE Alu 30 292 -20 375 257 65 102 chr6 167185814 167186059 -22093495 + L2 LINE L2 3077 3312 -1 3789 99 0 6 chr6 167186113 167186627 -22092927 + MER9 LTR ERVK 1 511 0 778 142 0 8 chr6 167186844 167186964 -22092590 - FLAM_A SINE Alu -14 119 1 2530 164 46 75 chr6 167186986 167187261 -22092293 + MER74A LTR ERVL 3 256 -302 2390 70 0 0 chr6 167187261 167187563 -22091991 + AluY SINE Alu 1 302 -9 2530 164 46 75 chr6 167187563 167187831 -22091723 + MER74A LTR ERVL 256 530 -28 1923 124 17 3 chr6 167187877 167188176 -22091378 + AluSx SINE Alu 1 303 -9 305 278 132 21 chr6 167188218 167188362 -22091192 - MLT1L LTR MaLR -18 597 438 2222 93 0 0 chr6 167188835 167189145 -22090409 - AluY SINE Alu 0 311 2 911 213 64 58 chr6 167190342 167190518 -22089036 + L1ME LINE L1 5321 5501 -663 1790 138 13 38 chr6 167190518 167190836 -22088718 + AluSx SINE Alu 1 310 -2 911 213 64 58 chr6 167190836 167190987 -22088567 + L1ME LINE L1 5501 5650 -514 338 191 16 0 chr6 167191003 167191066 -22088488 - MER2 DNA MER2_type 0 345 282 1675 172 77 9 chr6 167191066 167191391 -22088163 - MER7A DNA MER2_type 0 346 2 1935 130 7 7 chr6 167191467 167191760 -22087794 - AluSx SINE Alu -19 293 1 560 73 37 0 chr6 167191762 167191844 -22087710 - MER2 DNA MER2_type -139 206 122 1124 141 0 12 chr6 167191844 167192014 -22087540 + AluSq SINE Alu 1 168 -145 1468 128 0 13 chr6 167192014 167192240 -22087314 - AluSx SINE Alu -89 223 1 34 24 0 0 chr6 167192242 167192283 -22087271 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr6 167192294 167192324 -22087230 + AT_rich Low_complexity Low_complexity 1 30 0 2114 78 9 78 chr6 167192359 167192694 -22086860 - AluSx SINE Alu 0 312 1 2074 140 7 7 chr6 167192742 167193049 -22086505 - AluJb SINE Alu -5 307 1 1421 161 0 13 chr6 167193189 167193419 -22086135 - AluJb SINE Alu -22 290 64 182 37 37 0 chr6 167193427 167193454 -22086100 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 33 56 0 0 chr6 167193523 167193577 -22085977 + AT_rich Low_complexity Low_complexity 1 54 0 2097 114 18 0 chr6 167193578 167193859 -22085695 + AluSx SINE Alu 1 286 -26 2299 105 3 0 chr6 167193871 167194167 -22085387 + AluSx SINE Alu 3 299 -13 563 235 20 27 chr6 167194172 167194321 -22085233 - L1MC/D LINE L1 -2021 5787 5640 591 169 3 10 chr6 167194519 167194635 -22084919 - MLT1C LTR MaLR 0 467 375 198 308 119 7 chr6 167194667 167194810 -22084744 - L2 LINE L2 -1301 2013 1855 210 344 25 41 chr6 167195020 167195142 -22084412 + L2 LINE L2 2971 3090 -182 21 36 0 0 chr6 167195353 167195381 -22084173 + AT_rich Low_complexity Low_complexity 1 28 0 2122 125 3 0 chr6 167195427 167195724 -22083830 + AluSx SINE Alu 1 298 -14 2058 136 0 7 chr6 167196279 167196581 -22082973 + AluJb SINE Alu 1 300 -12 26 50 0 0 chr6 167196592 167196632 -22082922 + AT_rich Low_complexity Low_complexity 1 40 0 1923 169 0 0 chr6 167196738 167197033 -22082521 + AluSx SINE Alu 3 297 -15 3563 159 18 142 chr6 167197070 167197283 -22082271 + L1 LINE L1 3306 3544 -2602 1539 166 10 70 chr6 167197283 167197596 -22081958 + AluJb SINE Alu 1 294 -18 3563 159 18 142 chr6 167197596 167198416 -22081138 + L1 LINE L1 3544 4211 -1935 1017 170 46 41 chr6 167198416 167198634 -22080920 + AluJo SINE Alu 82 300 -12 408 88 0 0 chr6 167198733 167198790 -22080764 + (TA)n Simple_repeat Simple_repeat 2 58 0 3260 111 31 35 chr6 167198796 167199317 -22080237 + L1MA9 LINE L1 5787 6305 -7 789 175 0 36 chr6 167199318 167199455 -22080099 - FLAM_C SINE Alu 0 133 2 1347 204 19 38 chr6 167199475 167199793 -22079761 + AluJo SINE Alu 1 312 0 1304 206 22 84 chr6 167200444 167200585 -22078969 + AluJb SINE Alu 1 149 -153 750 23 0 0 chr6 167200585 167200673 -22078881 + (TA)n Simple_repeat Simple_repeat 2 89 0 1304 206 22 84 chr6 167200673 167201031 -22078523 + AluJb SINE Alu 149 302 0 262 94 0 38 chr6 167201033 167201086 -22078468 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 605 203 0 0 chr6 167252385 167252503 -22027051 - L1M4 LINE L1 -6420 122 5 2211 107 0 38 chr6 167252516 167252833 -22026721 - AluSx SINE Alu -3 309 5 636 146 0 0 chr6 167252949 167253045 -22026509 - MLT1A2 LTR MaLR 0 374 279 259 224 0 17 chr6 167253038 167253096 -22026458 + MLT1A2 LTR MaLR 230 286 -88 * 421 332 39 24 chr6 167253340 167253548 -22026006 + MIR SINE MIR 13 223 -39 211 27 27 27 chr6 167253696 167253733 -22025821 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2100 94 18 11 chr6 167253735 167254012 -22025542 - AluSx SINE Alu -29 283 5 1426 206 13 68 chr6 167254981 167255375 -22024179 + MLT1A2 LTR MaLR 1 372 -2 767 197 0 0 chr6 167255489 167255621 -22023933 + FLAM_A SINE Alu 2 133 0 2142 103 16 22 chr6 167255719 167256030 -22023524 - AluSq SINE Alu 0 313 5 296 293 89 52 chr6 167256131 167256322 -22023232 - MIR SINE MIR -13 249 52 359 260 101 82 chr6 167256395 167256454 -22023100 - MIR SINE MIR -48 214 158 2196 117 0 7 chr6 167256454 167256752 -22022802 - AluSg SINE Alu -14 296 1 359 260 101 82 chr6 167256752 167256900 -22022654 - MIR SINE MIR -104 158 3 2172 128 3 0 chr6 167257004 167257308 -22022246 - AluSx SINE Alu -7 305 1 2325 115 0 0 chr6 167258451 167258763 -22020791 + AluSx SINE Alu 1 312 0 5830 173 39 14 chr6 167258767 167259212 -22020342 + L1MA4A LINE L1 4119 4551 -1595 2026 116 23 17 chr6 167259212 167259514 -22020040 + AluSq SINE Alu 1 304 -9 5830 173 39 14 chr6 167259514 167260227 -22019327 + L1MA4A LINE L1 4551 5310 -836 2337 89 7 0 chr6 167260227 167260520 -22019034 + AluSq SINE Alu 5 299 -14 5830 173 39 14 chr6 167260520 167260542 -22019012 + L1MA4A LINE L1 5310 5330 -816 1552 165 0 4 chr6 167260543 167260780 -22018774 + AluJb SINE Alu 1 236 -76 450 176 0 0 chr6 167260881 167260955 -22018599 + AluJb SINE Alu 221 294 -18 369 127 79 0 chr6 167260955 167261018 -22018536 + L1MA4A LINE L1 5322 5389 -914 462 205 0 0 chr6 167261018 167261096 -22018458 - AluJ/FLAM SINE Alu -233 79 2 1247 99 6 0 chr6 167261121 167261282 -22018272 - AluSq SINE Alu -8 305 144 4925 122 5 32 chr6 167261282 167261353 -22018201 + L1MA4A LINE L1 5405 5476 -827 2239 190 64 113 chr6 167261353 167261591 -22017963 + LTR8A LTR ERV1 1 249 -478 2536 47 0 13 chr6 167261591 167261889 -22017665 + AluY SINE Alu 1 294 -17 2239 190 64 113 chr6 167261889 167262414 -22017140 + LTR8A LTR ERV1 249 727 0 4925 122 5 32 chr6 167262414 167262781 -22016773 + L1MA4A LINE L1 5476 5851 -452 2163 109 0 44 chr6 167262781 167263102 -22016452 + AluSx SINE Alu 1 307 -5 327 49 0 0 chr6 167263102 167263143 -22016411 + (TA)n Simple_repeat Simple_repeat 2 42 0 4925 122 5 32 chr6 167263143 167263506 -22016048 + L1MA4A LINE L1 5849 6186 -117 673 92 78 43 chr6 167263518 167263659 -22015895 + L1MA4A LINE L1 6158 6303 0 2086 138 3 0 chr6 167263694 167263992 -22015562 + AluJb SINE Alu 1 299 -13 2105 128 7 0 chr6 167264323 167264620 -22014934 - AluSx SINE Alu -13 299 1 329 109 0 0 chr6 167265901 167265947 -22013607 + Alu SINE Alu 245 290 -12 596 161 7 80 chr6 167265955 167266092 -22013462 + FLAM_C SINE Alu 9 135 -8 366 145 0 16 chr6 167266097 167266159 -22013395 + MER31A LTR ERV1 350 410 -75 2301 113 0 0 chr6 167266243 167266535 -22013019 - AluSx SINE Alu -20 292 1 183 42 0 0 chr6 167266604 167266628 -22012926 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1900 146 4 0 chr6 167266632 167266906 -22012648 - AluSx SINE Alu -37 275 1 2054 158 21 8 chr6 167266913 167267293 -22012261 - L1MB3 LINE L1 0 6183 5799 238 273 131 25 chr6 167267975 167268173 -22011381 + LTR48 LTR ERV1 529 747 -40 2110 113 3 3 chr6 167268277 167268600 -22010954 + AluSx SINE Alu 1 323 0 7871 106 36 6 chr6 167268983 167268998 -22010556 + HSMAR1 DNA Mariner 148 161 -1126 660 137 0 69 chr6 167268998 167269129 -22010425 - L1MB2 LINE L1 0 6171 6050 7871 106 36 6 chr6 167269129 167269156 -22010398 + HSMAR1 DNA Mariner 161 186 -1101 2055 112 3 39 chr6 167269156 167269461 -22010093 + AluY SINE Alu 1 294 -17 7871 106 36 6 chr6 167269461 167270516 -22009038 + HSMAR1 DNA Mariner 186 1279 -8 667 186 51 134 chr6 167270518 167270600 -22008954 - L1M3 LINE L1 -625 5546 5459 2639 45 0 22 chr6 167270600 167270914 -22008640 + AluY SINE Alu 1 307 -4 667 186 51 134 chr6 167270914 167271164 -22008390 - L1M3 LINE L1 -712 5459 5190 2161 133 0 0 chr6 167271164 167271466 -22008088 - AluSx SINE Alu -10 302 1 667 186 51 134 chr6 167271466 167271774 -22007780 - L1M3 LINE L1 -981 5190 4858 414 274 120 0 chr6 167271774 167271891 -22007663 + FLAM_A SINE Alu 1 131 -11 667 186 51 134 chr6 167271891 167272180 -22007374 - L1M3 LINE L1 -1313 4858 4547 2395 102 3 0 chr6 167272180 167272484 -22007070 - AluSq SINE Alu -8 305 1 667 186 51 134 chr6 167272484 167272876 -22006678 - L1M3 LINE L1 -1624 4547 4154 186 43 0 0 chr6 167273550 167273573 -22005981 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 847 157 6 6 chr6 167273573 167273739 -22005815 + CT-rich Low_complexity Low_complexity 3 168 0 2092 129 7 3 chr6 167273741 167274035 -22005519 - AluSx SINE Alu -17 295 1 2328 112 3 6 chr6 167274933 167275247 -22004307 - AluSq SINE Alu 0 313 1 1124 240 87 12 chr6 167275885 167276206 -22003348 - MLT1F1 LTR MaLR -59 508 164 425 120 173 0 chr6 167276351 167276426 -22003128 + AluS SINE Alu 2 89 -223 1129 160 0 49 chr6 167277014 167277239 -22002315 - AluJb SINE Alu 0 312 99 4330 108 15 2 chr6 167277241 167277859 -22001695 + MER41B LTR ERV1 1 626 -9 573 120 11 33 chr6 167277867 167277959 -22001595 - FLAM_A SINE Alu -43 99 10 1657 165 16 30 chr6 167278612 167278744 -22000810 + AluJb SINE Alu 1 133 -179 2125 53 8 0 chr6 167278744 167278990 -22000564 + AluY SINE Alu 51 298 -13 1657 165 16 30 chr6 167278990 167279160 -22000394 + AluJb SINE Alu 133 299 -13 1772 106 0 4 chr6 167279283 167279529 -22000025 + AluSg/x SINE Alu 67 311 -1 1802 183 0 7 chr6 167279548 167279854 -21999700 + AluJo SINE Alu 1 304 -8 685 98 0 0 chr6 167279940 167280032 -21999522 + FLAM SINE Alu 39 130 -13 2269 95 0 17 chr6 167280295 167280591 -21998963 - AluSq SINE Alu -22 291 1 4685 170 50 54 chr6 167281062 167281716 -21997838 - L1MD1 LINE L1 0 6242 5587 2111 120 14 0 chr6 167281716 167282008 -21997546 + AluSx SINE Alu 1 296 -16 4685 170 50 54 chr6 167282008 167282538 -21997016 - L1MD1 LINE L1 -655 5587 5056 2377 71 0 0 chr6 167282538 167282833 -21996721 - AluY SINE Alu -11 300 6 4685 170 50 54 chr6 167282833 167283029 -21996525 - L1MD1 LINE L1 -1186 5056 4861 261 0 0 0 chr6 167283043 167283072 -21996482 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 2471 81 0 13 chr6 167283274 167283583 -21995971 - AluSx SINE Alu -7 305 1 23 54 0 0 chr6 167283747 167283784 -21995770 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 167284752 167284775 -21994779 + AT_rich Low_complexity Low_complexity 1 23 0 219 224 0 0 chr6 167285287 167285336 -21994218 + L2 LINE L2 3264 3312 -1 398 28 56 28 chr6 167285340 167285412 -21994142 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 1790 124 102 14 chr6 167285513 167285796 -21993758 - AluJo SINE Alu -3 309 2 2303 125 0 0 chr6 167286100 167286412 -21993142 - AluSx SINE Alu 0 312 1 594 249 89 38 chr6 167286536 167286749 -21992805 + MIR SINE MIR 14 237 -25 21 0 0 0 chr6 167286885 167286906 -21992648 + AT_rich Low_complexity Low_complexity 1 21 0 899 150 0 0 chr6 167286915 167287048 -21992506 + FLAM_C SINE Alu 1 133 0 1336 152 17 38 chr6 167287240 167287477 -21992077 - AluJo SINE Alu 0 312 81 21 82 0 0 chr6 167288786 167288835 -21990719 + GC_rich Low_complexity Low_complexity 1 49 0 2322 79 0 0 chr6 167292440 167292748 -21986806 + AluY SINE Alu 1 308 0 1436 92 0 5 chr6 167293558 167293743 -21985811 - AluSg SINE Alu -77 233 50 895 73 0 37 chr6 167293744 167293880 -21985674 + AluYb8 SINE Alu 184 314 -4 23 33 0 0 chr6 167293936 167293966 -21985588 + AT_rich Low_complexity Low_complexity 1 30 0 395 273 104 56 chr6 167294284 167294334 -21985220 - L1MC/D LINE L1 -2174 5634 5588 2360 100 0 3 chr6 167294334 167294645 -21984909 + AluSg SINE Alu 1 310 0 395 273 104 56 chr6 167294645 167294843 -21984711 - L1MC/D LINE L1 -2220 5588 5374 1338 177 3 93 chr6 167294956 167295290 -21984264 - AluSq SINE Alu -9 304 1 264 298 0 43 chr6 167295454 167295548 -21984006 + L2 LINE L2 3217 3306 -7 774 107 15 53 chr6 167295548 167295679 -21983875 + FLAM_C SINE Alu 2 127 -16 2311 76 3 0 chr6 167296027 167296318 -21983236 - AluSg SINE Alu -18 292 1 754 186 0 0 chr6 167296629 167296758 -21982796 + FLAM_A SINE Alu 6 134 -8 307 307 50 25 chr6 167296759 167296880 -21982674 - MER5B DNA MER1_type -54 135 4 1133 223 11 15 chr6 167297614 167297883 -21981671 - AluJo SINE Alu -21 291 24 433 198 12 45 chr6 167297994 167298331 -21981223 + CT-rich Low_complexity Low_complexity 1 325 0 2593 39 0 3 chr6 167298717 167299028 -21980526 - AluY SINE Alu 0 311 2 181 349 48 24 chr6 167300179 167300305 -21979249 + L2 LINE L2 2721 2849 -465 206 301 73 73 chr6 167300566 167300702 -21978852 + L2 LINE L2 3164 3299 -14 1701 70 0 0 chr6 167301549 167301763 -21977791 + AluSq SINE Alu 84 297 -16 302 98 0 0 chr6 167301964 167302033 -21977521 - AluSp/q SINE Alu 0 312 244 1293 101 6 0 chr6 167302033 167302211 -21977343 - AluSx SINE Alu -133 179 1 25 0 0 0 chr6 167302253 167302278 -21977276 + AT_rich Low_complexity Low_complexity 1 25 0 1258 163 125 26 chr6 167302278 167302542 -21977012 + AluJo SINE Alu 1 290 -22 2077 114 13 10 chr6 167302839 167303147 -21976407 + AluSx SINE Alu 1 309 -3 2004 119 7 0 chr6 167303148 167303451 -21976103 + AluSx SINE Alu 1 305 -7 2380 62 0 10 chr6 167303454 167303759 -21975795 + AluY SINE Alu 2 303 -8 322 245 20 82 chr6 167304116 167304214 -21975340 + MIR SINE MIR 89 180 -82 377 294 32 16 chr6 167304238 167304364 -21975190 + MIR SINE MIR 29 156 -106 2259 91 0 0 chr6 167304481 167304778 -21974776 + AluSx SINE Alu 1 297 -15 2365 71 3 3 chr6 167307881 167308189 -21971365 - AluSx SINE Alu -3 309 2 235 267 86 52 chr6 167308215 167308331 -21971223 + MIR SINE MIR 77 196 -66 1574 109 0 0 chr6 167308383 167308593 -21970961 + AluSg/x SINE Alu 78 287 -25 2247 67 3 0 chr6 167309007 167309317 -21970237 - AluSp SINE Alu 0 311 1 201 289 24 60 chr6 167309704 167309787 -21969767 + L2 LINE L2 2259 2338 -976 189 347 0 0 chr6 167309944 167309993 -21969561 + L2 LINE L2 2568 2616 -698 731 161 31 8 chr6 167310021 167310151 -21969403 - FLAM_A SINE Alu 0 133 1 314 310 78 0 chr6 167310227 167310356 -21969198 - MER20 DNA MER1_type -21 198 60 1440 172 25 11 chr6 167311000 167311279 -21968275 + AluJo SINE Alu 11 293 -19 2360 70 3 0 chr6 167311525 167311825 -21967729 + AluY SINE Alu 1 301 -10 1879 159 13 0 chr6 167311836 167312144 -21967410 + AluSx SINE Alu 1 312 0 1895 96 38 24 chr6 167312154 167312445 -21967109 + MER39B LTR ERV1 276 570 -83 711 208 0 0 chr6 167312463 167312588 -21966966 + FLAM_C SINE Alu 2 126 -17 1029 169 164 0 chr6 167312645 167312864 -21966690 + AluJo SINE Alu 35 289 -23 189 0 0 0 chr6 167314173 167314194 -21965360 + (A)n Simple_repeat Simple_repeat 1 21 0 876 56 0 0 chr6 167314593 167314732 -21964822 + AluSp/q SINE Alu 179 317 0 2086 103 0 0 chr6 167316303 167316610 -21962944 + AluSc SINE Alu 1 307 0 1894 112 29 4 chr6 167316615 167316919 -21962635 + AluSx SINE Alu 1 311 0 1389 188 10 33 chr6 167316923 167317227 -21962327 + AluJo SINE Alu 1 297 -15 2337 50 3 0 chr6 167317232 167317539 -21962015 + AluY SINE Alu 1 308 0 1615 192 0 0 chr6 167323255 167323547 -21956007 - AluJb SINE Alu -20 292 1 2052 113 7 10 chr6 167323560 167323726 -21955828 - AluSx SINE Alu -11 301 135 1855 76 94 31 chr6 167323726 167324014 -21955540 - AluY SINE Alu -5 306 1 2052 113 7 10 chr6 167324014 167324147 -21955407 - AluSx SINE Alu -177 135 3 23 0 0 0 chr6 167324149 167324172 -21955382 + AT_rich Low_complexity Low_complexity 1 23 0 238 222 37 12 chr6 167324462 167324543 -21955011 + L1MC5 LINE L1 7308 7390 -571 1955 204 84 79 chr6 167324613 167324791 -21954763 + L1MC4 LINE L1 6804 6980 -1062 303 167 226 12 chr6 167324791 167324875 -21954679 + U13 snRNA snRNA 1 102 -2 1955 204 84 79 chr6 167324875 167325477 -21954077 + L1MC4 LINE L1 6980 7588 -454 227 217 33 33 chr6 167325692 167325752 -21953802 + L1MC4 LINE L1 7608 7667 -375 233 152 43 0 chr6 167325864 167325910 -21953644 + L1ME LINE L1 5872 5919 -202 637 237 35 40 chr6 167326042 167326240 -21953314 - L1M4 LINE L1 -1953 4193 3997 277 399 35 21 chr6 167326343 167326486 -21953068 + MIR SINE MIR 3 147 -61 326 269 19 39 chr6 167326801 167326905 -21952649 + MIR SINE MIR 34 135 -127 297 0 0 0 chr6 167326906 167326939 -21952615 + (T)n Simple_repeat Simple_repeat 1 33 0 364 286 33 0 chr6 167327330 167327421 -21952133 + MER91A DNA MER1_type 86 179 -17 257 290 151 0 chr6 167327417 167327510 -21952044 + MER91A DNA MER1_type 90 196 0 * 532 280 69 17 chr6 167327524 167327699 -21951855 + L2 LINE L2 3122 3305 -8 2118 115 0 3 chr6 167327709 167328013 -21951541 - AluSq SINE Alu -10 303 1 1261 126 0 0 chr6 167328299 167328481 -21951073 + AluJb SINE Alu 129 310 -2 635 221 0 0 chr6 167328488 167328601 -21950953 + FRAM SINE Alu 1 112 -64 504 122 12 24 chr6 167328643 167328725 -21950829 + AluJ/FRAM SINE Alu 219 299 -13 259 333 0 12 chr6 167328747 167328831 -21950723 + MLT1L LTR MaLR 322 404 -211 1224 135 64 100 chr6 167328839 167329150 -21950404 + AluJb SINE Alu 11 310 -2 1977 123 0 3 chr6 167329438 167329748 -21949806 + AluY SINE Alu 3 311 0 379 279 70 0 chr6 167330291 167330420 -21949134 - MIR SINE MIR -1 261 124 1199 84 0 6 chr6 167330430 167330621 -21948933 + AluY SINE Alu 119 308 0 198 0 0 0 chr6 167330970 167330992 -21948562 + (CCG)n Simple_repeat Simple_repeat 3 24 0 192 77 0 0 chr6 167331008 167331034 -21948520 + (CAG)n Simple_repeat Simple_repeat 3 28 0 24 67 0 0 chr6 167331353 167331398 -21948156 + GC_rich Low_complexity Low_complexity 1 45 0 189 147 0 0 chr6 167331515 167331549 -21948005 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 209 191 0 0 chr6 167331844 167331886 -21947668 + (CTG)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr6 167332001 167332023 -21947531 + GC_rich Low_complexity Low_complexity 1 22 0 40 0 0 0 chr6 167332233 167332273 -21947281 + GC_rich Low_complexity Low_complexity 1 40 0 840 118 0 37 chr6 167333272 167333408 -21946146 - FLAM_C SINE Alu 0 133 3 737 165 15 15 chr6 167333883 167334016 -21945538 + FLAM_C SINE Alu 1 133 0 23 33 0 0 chr6 167334562 167334592 -21944962 + AT_rich Low_complexity Low_complexity 1 30 0 535 256 16 0 chr6 167335054 167335179 -21944375 + Charlie1a DNA MER1_type 1 127 -1328 2448 180 121 8 chr6 167335192 167335810 -21943744 + Charlie1a DNA MER1_type 768 1455 0 1570 167 39 0 chr6 167335996 167336278 -21943276 - AluJb SINE Alu -10 302 10 208 328 15 15 chr6 167337624 167337691 -21941863 + MIR3 SINE MIR 3 69 -139 730 336 50 42 chr6 167337781 167338302 -21941252 + L2 LINE L2 2263 2787 -527 203 226 16 32 chr6 167338502 167338564 -21940990 - MIR SINE MIR -161 101 41 213 108 0 0 chr6 167338768 167338805 -21940749 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 814 133 17 0 chr6 167339201 167339321 -21940233 + FLAM_A SINE Alu 1 122 -11 2112 96 14 0 chr6 167339330 167339622 -21939932 + AluSg SINE Alu 1 296 -14 2029 89 3 17 chr6 167339704 167339995 -21939559 + AluSq SINE Alu 10 296 -17 2271 90 3 0 chr6 167339995 167340296 -21939258 + AluSp SINE Alu 1 302 -11 2043 134 42 6 chr6 167340312 167340647 -21938907 + MER7A DNA MER2_type 2 346 0 21 0 0 0 chr6 167340978 167340999 -21938555 + AT_rich Low_complexity Low_complexity 1 21 0 2255 106 0 0 chr6 167340999 167341311 -21938243 - AluSx SINE Alu 0 312 1 337 263 85 17 chr6 167341311 167341429 -21938125 - L2 LINE L2 -565 2749 2624 211 282 141 34 chr6 167341767 167341973 -21937581 - L2 LINE L2 -1208 2106 1879 328 248 146 15 chr6 167342735 167342872 -21936682 + L1MC/D LINE L1 5127 5281 -865 1818 159 13 3 chr6 167342882 167343191 -21936363 - AluJo SINE Alu 0 312 1 240 258 113 0 chr6 167343207 167343331 -21936223 + L1MC/D LINE L1 5294 5431 -811 22 0 0 0 chr6 167343475 167343497 -21936057 + AT_rich Low_complexity Low_complexity 1 22 0 369 270 63 16 chr6 167343567 167343693 -21935861 + MIR SINE MIR 75 206 -56 548 124 134 0 chr6 167344450 167344547 -21935007 + HY1 scRNA scRNA 1 110 -2 31 0 0 0 chr6 167344547 167344578 -21934976 + AT_rich Low_complexity Low_complexity 1 31 0 1939 101 27 14 chr6 167344718 167345014 -21934540 + AluSc SINE Alu 3 302 -7 1379 127 0 27 chr6 167344959 167345180 -21934374 + AluSq SINE Alu 85 299 -14 5165 167 60 22 chr6 167345180 167346680 -21932874 - L1MD1 LINE L1 -8 6234 4681 1902 92 7 43 chr6 167346681 167346963 -21932591 + AluSq SINE Alu 1 272 -41 408 143 60 36 chr6 167347077 167347161 -21932393 - MER81 DNA DNA 0 114 29 225 314 0 17 chr6 167347161 167347279 -21932275 + C-rich Low_complexity Low_complexity 5 120 0 190 83 0 0 chr6 167348184 167348208 -21931346 + L2 LINE L2 3256 3279 -34 1370 176 104 7 chr6 167349331 167349609 -21929945 + AluJo SINE Alu 1 305 -7 2198 84 0 27 chr6 167349889 167350187 -21929367 - AluY SINE Alu -21 290 1 207 0 0 0 chr6 167350213 167350236 -21929318 + (TG)n Simple_repeat Simple_repeat 1 23 0 622 230 128 0 chr6 167350654 167350850 -21928704 + MER112 DNA MER1_type 36 256 -4 772 166 316 30 chr6 167350854 167351239 -21928315 - MLT1F LTR MaLR -11 531 1 2090 104 7 0 chr6 167351263 167351563 -21927991 - AluSx SINE Alu 0 302 1 205 218 29 84 chr6 167351663 167351762 -21927792 - MIR3 SINE MIR -42 166 74 2407 97 0 3 chr6 167352377 167352687 -21926867 - AluSx SINE Alu -3 309 1 198 241 36 24 chr6 167352806 167352889 -21926665 + L2 LINE L2 3160 3243 -70 231 284 34 34 chr6 167352997 167353085 -21926469 - L2 LINE L2 -49 3223 3136 2328 82 0 10 chr6 167353200 167353503 -21926051 + AluSc SINE Alu 1 300 -9 619 152 38 61 chr6 167353684 167353816 -21925738 - MER3 DNA MER1_type -80 129 1 552 254 85 12 chr6 167353971 167354136 -21925418 + MIR SINE MIR 12 188 -74 845 271 51 32 chr6 167354228 167354542 -21925012 - L1ME1 LINE L1 -25 6141 5822 533 136 40 128 chr6 167354860 167354961 -21924593 - MER81 DNA DNA 0 114 24 1867 145 41 0 chr6 167354961 167355251 -21924303 + AluSg SINE Alu 1 302 -8 533 136 40 128 chr6 167355251 167355274 -21924280 - MER81 DNA DNA -90 24 1 1440 108 35 0 chr6 167355705 167355937 -21923617 - AluSp SINE Alu -14 299 60 611 140 43 0 chr6 167356044 167356137 -21923417 - AluSg1 SINE Alu -211 98 2 2335 95 0 0 chr6 167356299 167356593 -21922961 + AluSg SINE Alu 1 294 -16 210 250 19 39 chr6 167356949 167357001 -21922553 - MIR SINE MIR -104 104 54 2229 87 0 0 chr6 167357641 167357946 -21921608 + AluSg SINE Alu 5 309 0 225 233 136 0 chr6 167358041 167358144 -21921410 - Charlie4 DNA MER1_type -54 1907 1791 1909 121 11 4 chr6 167358144 167358448 -21921106 + AluSx SINE Alu 1 306 0 276 241 156 66 chr6 167358568 167358717 -21920837 + L1ME LINE L1 5658 5833 -288 1972 144 0 3 chr6 167358717 167359022 -21920532 + AluJo SINE Alu 1 304 -8 276 241 156 66 chr6 167359022 167359084 -21920470 + L1ME LINE L1 5833 5888 -233 2405 96 3 0 chr6 167359119 167359431 -21920123 + AluSq SINE Alu 1 313 0 193 217 22 0 chr6 167359470 167359516 -21920038 - L2 LINE L2 -1 3312 3266 2239 109 0 34 chr6 167359592 167359913 -21919641 + AluSx SINE Alu 1 310 -2 1366 194 36 93 chr6 167360379 167360766 -21918788 + MLT1A1 LTR MaLR 1 365 0 2251 82 4 0 chr6 167360856 167361162 -21918392 + AluSq SINE Alu 1 307 0 189 0 0 0 chr6 167361295 167361316 -21918238 + (A)n Simple_repeat Simple_repeat 1 21 0 1571 142 97 15 chr6 167361327 167361594 -21917960 + AluJo SINE Alu 14 302 -10 2291 101 3 19 chr6 167362239 167362556 -21916998 + AluSx SINE Alu 1 312 0 2927 167 87 98 chr6 167363026 167363187 -21916367 + L1MB8 LINE L1 5146 5307 -871 2021 109 3 7 chr6 167363187 167363470 -21916084 - AluSg SINE Alu -28 282 1 2927 167 87 98 chr6 167363470 167363490 -21916064 + L1MB8 LINE L1 5307 5326 -852 2295 97 0 3 chr6 167363490 167363788 -21915766 - AluSc SINE Alu -12 297 1 2927 167 87 98 chr6 167363788 167364009 -21915545 + L1MB8 LINE L1 5326 5548 -630 2160 106 10 16 chr6 167364009 167364312 -21915242 + AluSx SINE Alu 1 301 -11 2927 167 87 98 chr6 167364312 167364616 -21914938 + L1MB8 LINE L1 5548 5854 -324 953 128 0 0 chr6 167364616 167364749 -21914805 + FLAM_C SINE Alu 1 133 0 2927 167 87 98 chr6 167364749 167365088 -21914466 + L1MB8 LINE L1 5854 6178 0 2364 82 3 0 chr6 167365095 167365389 -21914165 + AluSc SINE Alu 1 295 -14 1375 195 77 4 chr6 167365400 167365672 -21913882 + AluJb SINE Alu 1 292 -20 308 289 77 19 chr6 167368385 167368489 -21911065 + MIR3 SINE MIR 62 171 -37 558 270 106 5 chr6 167368654 167368843 -21910711 + MIR SINE MIR 47 254 -8 772 186 0 16 chr6 167368871 167369000 -21910554 - FLAM_C SINE Alu -15 128 2 2223 93 7 3 chr6 167369049 167369349 -21910205 - AluSx SINE Alu -11 301 1 25 65 0 0 chr6 167369355 167369401 -21910153 + AT_rich Low_complexity Low_complexity 1 46 0 282 291 94 34 chr6 167369585 167369702 -21909852 + L2 LINE L2 3136 3259 -13 2344 96 0 0 chr6 167370099 167370392 -21909162 + AluSx SINE Alu 1 293 -19 460 290 146 41 chr6 167370478 167370977 -21908577 + L2 LINE L2 2487 3144 -169 464 257 70 27 chr6 167371201 167371388 -21908166 - MIR SINE MIR -29 233 39 1830 221 45 23 chr6 167372667 167373138 -21906416 - MARNA DNA Mariner -39 547 67 1473 189 59 3 chr6 167373134 167373420 -21906134 + MER58B DNA MER1_type 23 324 -17 * 2080 218 79 34 chr6 167373567 167374123 -21905431 + L1ME3A LINE L1 5585 6165 -5 201 233 36 26 chr6 167374514 167374601 -21904953 + MER5A DNA MER1_type 14 88 -90 2246 113 0 0 chr6 167374646 167374937 -21904617 - AluSq SINE Alu -22 291 1 479 277 25 19 chr6 167375259 167375418 -21904136 + MIR SINE MIR 15 174 -88 2441 81 0 3 chr6 167375512 167375822 -21903732 - AluSc SINE Alu 0 309 1 2026 96 0 74 chr6 167375923 167376266 -21903288 + AluSx SINE Alu 1 320 0 1855 154 13 0 chr6 167376517 167376816 -21902738 - AluSx SINE Alu -9 303 1 1842 160 3 0 chr6 167377182 167377470 -21902084 - AluSx SINE Alu -23 289 1 214 315 120 0 chr6 167379011 167379103 -21900451 - L2 LINE L2 -14 3258 3156 847 222 6 0 chr6 167379511 167379682 -21899872 + FRAM SINE Alu 1 172 -4 8535 44 1 8 chr6 167380140 167381116 -21898438 + LTR5 LTR ERVK 1 969 0 216 239 84 14 chr6 167381136 167381207 -21898347 + MIR3 SINE MIR 125 200 -8 22 35 0 0 chr6 167382837 167382866 -21896688 + AT_rich Low_complexity Low_complexity 1 29 0 416 156 255 50 chr6 167383033 167383174 -21896380 - MER96 DNA MER1_type? -3 172 3 389 236 89 8 chr6 167384690 167384813 -21894741 - L2 LINE L2 -5 3308 3176 341 333 22 29 chr6 167384882 167385020 -21894534 + L2 LINE L2 3136 3272 0 * 1023 258 143 53 chr6 167385010 167385107 -21894447 - L2 LINE L2 -134 3179 3092 10215 37 4 138 chr6 167385107 167386696 -21892858 - SVA Other Other 0 1386 11 1023 258 143 53 chr6 167386696 167386940 -21892614 - L2 LINE L2 -221 3092 2871 2163 107 0 7 chr6 167386940 167387239 -21892315 - AluSg SINE Alu -13 297 1 1900 108 100 0 chr6 167387239 167387517 -21892037 - AluSx SINE Alu -3 309 3 1023 258 143 53 chr6 167387517 167387860 -21891694 - L2 LINE L2 -441 2872 2392 1023 172 59 15 chr6 167387863 167388136 -21891418 - L2 LINE L2 -2228 1086 802 2334 94 0 10 chr6 167388210 167388518 -21891036 + AluSx SINE Alu 1 305 -7 338 289 96 44 chr6 167388763 167388898 -21890656 + MIR SINE MIR 3 144 -118 185 250 39 0 chr6 167389190 167389242 -21890312 + L2 LINE L2 2980 3033 -239 1823 133 27 20 chr6 167389411 167389705 -21889849 - AluSx SINE Alu -16 296 1 1577 161 57 47 chr6 167389887 167390185 -21889369 - AluJb SINE Alu -11 301 1 21 57 0 0 chr6 167390437 167390472 -21889082 + AT_rich Low_complexity Low_complexity 1 35 0 208 143 0 0 chr6 167391327 167391362 -21888192 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 2178 105 14 0 chr6 167392718 167393013 -21886541 + AluSx SINE Alu 1 299 -13 1358 177 10 47 chr6 167393495 167393795 -21885759 + AluJo SINE Alu 10 298 -14 390 209 115 74 chr6 167393959 167394107 -21885447 - MER112 DNA MER1_type -95 165 12 2523 229 114 33 chr6 167394215 167394952 -21884602 - MER21B LTR ERV1 -47 816 20 376 263 21 11 chr6 167394959 167395054 -21884500 - MER21B LTR ERV1 -766 97 2 2122 120 10 0 chr6 167396072 167396364 -21883190 + AluSx SINE Alu 1 295 -17 2227 107 7 0 chr6 167396366 167396675 -21882879 + AluSp SINE Alu 1 311 -2 2050 131 17 0 chr6 167397203 167397494 -21882060 - AluSx SINE Alu -16 296 1 326 294 110 25 chr6 167397655 167397818 -21881736 - Charlie8 DNA MER1_type -2235 182 6 372 278 65 0 chr6 167398731 167398839 -21880715 - MIR SINE MIR -8 254 140 706 215 91 62 chr6 167398891 167399133 -21880421 + MER112 DNA MER1_type 1 249 -11 405 317 107 12 chr6 167399393 167399636 -21879918 - L3 LINE CR1 -3 1574 1309 2409 100 0 0 chr6 167400192 167400503 -21879051 - AluSp SINE Alu -2 311 1 1071 76 0 8 chr6 167400606 167400738 -21878816 + AluSp SINE Alu 1 131 -182 2248 122 0 0 chr6 167400880 167401176 -21878378 + AluSx SINE Alu 1 296 -16 2186 113 3 3 chr6 167401178 167401469 -21878085 + AluSx SINE Alu 1 291 -21 1731 154 12 44 chr6 167402182 167402501 -21877053 + AluJo SINE Alu 1 309 -3 262 236 217 0 chr6 167403727 167403833 -21875721 - MIR SINE MIR -70 192 64 2192 119 3 10 chr6 167404090 167404401 -21875153 + AluSg SINE Alu 1 309 -1 1121 139 58 133 chr6 167404401 167404731 -21874823 - MER33 DNA MER1_type -19 305 1 510 245 109 60 chr6 167406607 167406906 -21872648 + L1ME4a LINE L1 5570 5890 -231 2028 125 3 7 chr6 167406906 167407203 -21872351 + AluSx SINE Alu 1 296 -16 510 245 109 60 chr6 167407203 167407250 -21872304 + L1ME4a LINE L1 5890 5933 -188 1825 177 0 7 chr6 167407493 167407776 -21871778 + AluJo SINE Alu 1 281 -31 321 241 36 0 chr6 167408025 167408108 -21871446 + L1ME4a LINE L1 5942 6027 -94 1428 148 113 4 chr6 167408186 167408443 -21871111 - AluJb SINE Alu -2 310 26 267 247 32 65 chr6 167408445 167408599 -21870955 + L1ME4a LINE L1 5967 6115 -6 667 95 0 11 chr6 167408937 167409032 -21870522 - AluSg/x SINE Alu -15 297 204 2235 95 0 14 chr6 167409691 167409986 -21869568 + AluY SINE Alu 1 291 -20 2046 124 7 0 chr6 167410232 167410522 -21869032 + AluSx SINE Alu 1 292 -20 2223 98 7 7 chr6 167411257 167411564 -21867990 - AluSx SINE Alu -4 308 2 2038 110 0 0 chr6 167412004 167412268 -21867286 + AluSx SINE Alu 1 264 -48 2467 68 7 7 chr6 167413713 167414022 -21865532 + AluSx SINE Alu 1 309 -3 952 239 54 4 chr6 167414033 167414292 -21865262 + L1MC4 LINE L1 7317 7588 -454 4713 144 15 24 chr6 167414548 167414836 -21864718 + L1MC1 LINE L1 5541 5830 -503 2285 84 3 29 chr6 167414836 167415146 -21864408 + AluSg1 SINE Alu 2 303 -6 4713 144 15 24 chr6 167415146 167415657 -21863897 + L1MC1 LINE L1 5830 6333 0 1079 228 166 73 chr6 167416070 167416316 -21863238 + L1MC4 LINE L1 7176 7398 -644 2116 122 17 0 chr6 167416316 167416611 -21862943 + AluSx SINE Alu 1 300 -12 1079 228 166 73 chr6 167416611 167417019 -21862535 + L1MC4 LINE L1 7398 7891 -151 1638 151 39 7 chr6 167417024 167417303 -21862251 - AluJb SINE Alu -24 288 1 254 174 22 174 chr6 167417388 167417526 -21862028 + L1MC4 LINE L1 7913 8029 -13 2148 107 13 31 chr6 167417527 167417844 -21861710 - AluSq SINE Alu -2 311 1 241 271 51 0 chr6 167418096 167418155 -21861399 + MIR SINE MIR 20 81 -181 4660 147 20 19 chr6 167418165 167418305 -21861249 + L1PB4 LINE L1 5323 5461 -695 2174 120 10 3 chr6 167418305 167418604 -21860950 - AluSx SINE Alu -11 301 1 4660 147 20 19 chr6 167418604 167419292 -21860262 + L1PB4 LINE L1 5461 6151 -5 1730 151 29 26 chr6 167419292 167419603 -21859951 + AluSx SINE Alu 1 312 0 2503 50 0 7 chr6 167420144 167420444 -21859110 + AluY SINE Alu 1 298 -13 2178 104 0 3 chr6 167420458 167420755 -21858799 - AluSx SINE Alu -16 296 1 877 147 0 14 chr6 167420936 167421079 -21858475 - FLAM_C SINE Alu -2 141 1 2124 97 42 3 chr6 167421310 167421598 -21857956 - AluSx SINE Alu -13 299 1 2436 63 7 13 chr6 167422731 167423033 -21856521 + AluSc SINE Alu 1 300 -9 675 66 11 11 chr6 167423065 167423156 -21856398 + FRAM SINE Alu 27 117 -59 2524 67 0 0 chr6 167423165 167423463 -21856091 - AluY SINE Alu -13 298 1 277 139 0 0 chr6 167424778 167424821 -21854733 - FAM SINE Alu -17 158 116 1270 168 0 5 chr6 167424823 167425026 -21854528 - AluJo SINE Alu -110 202 1 310 299 92 11 chr6 167425155 167425339 -21854215 + MIR SINE MIR 62 260 -2 2181 79 43 4 chr6 167425663 167425943 -21853611 + AluSx SINE Alu 1 291 -21 2466 81 0 0 chr6 167426413 167426710 -21852844 - AluSg SINE Alu -13 297 1 2620 34 0 3 chr6 167426723 167427019 -21852535 - AluY SINE Alu -14 297 3 2249 103 0 0 chr6 167427952 167428264 -21851290 + AluSc SINE Alu 1 312 0 246 62 0 0 chr6 167428545 167428577 -21850977 + (T)n Simple_repeat Simple_repeat 1 32 0 2377 80 0 10 chr6 167431499 167431798 -21847756 - AluSx SINE Alu -16 296 1 183 330 144 10 chr6 167432191 167432288 -21847266 - L2 LINE L2 -5 3267 3158 1785 254 54 91 chr6 167432680 167432859 -21846695 + L1MD2 LINE L1 5301 5485 -874 2360 89 7 3 chr6 167432859 167433163 -21846391 + AluSg SINE Alu 1 305 -5 1785 254 54 91 chr6 167433163 167434145 -21845409 + L1MD2 LINE L1 5485 6120 -239 3088 189 38 31 chr6 167433213 167433780 -21845774 + L1MB8 LINE L1 5479 6053 -125 2428 109 0 0 chr6 167433780 167434092 -21845462 + AluSx SINE Alu 1 312 0 3088 189 38 31 chr6 167434092 167434210 -21845344 + L1MB8 LINE L1 6053 6169 -9 990 109 0 0 chr6 167434647 167434785 -21844769 + FLAM_C SINE Alu 1 138 -5 487 123 0 0 chr6 167435197 167435270 -21844284 - 7SK RNA RNA 0 193 121 555 128 0 0 chr6 167435306 167435400 -21844154 - 7SK RNA RNA -68 125 32 315 132 0 0 chr6 167435493 167435561 -21843993 + (TA)n Simple_repeat Simple_repeat 2 69 0 451 15 15 31 chr6 167435562 167435627 -21843927 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 351 263 33 86 chr6 167436075 167436110 -21843444 + HAL1 LINE L1 1292 1327 -1180 1820 158 20 26 chr6 167436110 167436413 -21843141 - AluJo SINE Alu -11 301 1 351 263 33 86 chr6 167436413 167436529 -21843025 + HAL1 LINE L1 1327 1435 -1072 1149 194 133 36 chr6 167436717 167437047 -21842507 - MLT1A1 LTR MaLR 0 365 4 687 226 6 18 chr6 167437632 167437800 -21841754 + L3 LINE CR1 1199 1364 -213 2097 129 22 55 chr6 167437973 167438129 -21841425 + MLT1B LTR MaLR 1 161 -229 2286 81 0 24 chr6 167438129 167438425 -21841129 + AluSx SINE Alu 1 289 -23 2097 129 22 55 chr6 167438425 167438671 -21840883 + MLT1B LTR MaLR 161 390 0 2716 96 3 5 chr6 167438996 167439372 -21840182 + THE1C LTR MaLR 1 375 0 1932 157 24 41 chr6 167439528 167439897 -21839657 + MLT1A1 LTR MaLR 3 365 0 2311 98 3 0 chr6 167439997 167440293 -21839261 - AluSg SINE Alu -12 298 2 2041 118 20 14 chr6 167440740 167441037 -21838517 + AluSx SINE Alu 1 299 -13 306 238 36 0 chr6 167442097 167442181 -21837373 - L2 LINE L2 -1 3312 3226 2338 82 0 7 chr6 167442252 167442557 -21836997 - AluY SINE Alu -8 303 1 1853 143 7 23 chr6 167442575 167442876 -21836678 - AluJo SINE Alu -14 298 3 1364 226 7 10 chr6 167443798 167444090 -21835464 + AluJo SINE Alu 1 291 -21 500 155 155 0 chr6 167444501 167444604 -21834950 - AluJb SINE Alu -192 120 2 2292 87 3 7 chr6 167444675 167444984 -21834570 - AluSq SINE Alu -3 310 3 2322 106 0 0 chr6 167445892 167446194 -21833360 + AluSx SINE Alu 1 302 -10 2137 147 0 0 chr6 167446554 167446866 -21832688 + AluSx SINE Alu 1 312 0 1888 107 28 79 chr6 167446892 167447209 -21832345 + AluSx SINE Alu 1 301 -11 259 294 73 18 chr6 167447793 167447902 -21831652 + MIR SINE MIR 148 262 0 21 0 0 0 chr6 167449876 167449897 -21829657 + AT_rich Low_complexity Low_complexity 1 21 0 1866 112 46 46 chr6 167450195 167450500 -21829054 + AluSg SINE Alu 1 305 -5 2290 116 3 0 chr6 167450548 167450859 -21828695 - AluSx SINE Alu 0 312 1 230 264 55 92 chr6 167450970 167451133 -21828421 - MIR SINE MIR -57 205 49 2180 110 20 0 chr6 167451852 167452153 -21827401 - AluSq SINE Alu -6 307 1 762 137 16 8 chr6 167452610 167452734 -21826820 + FLAM_A SINE Alu 1 125 -8 2197 94 20 10 chr6 167452759 167453058 -21826496 + AluSg SINE Alu 3 304 -6 800 173 0 0 chr6 167455138 167455271 -21824283 + FLAM_C SINE Alu 1 133 0 240 237 98 44 chr6 167455285 167455455 -21824099 + L1ME LINE L1 5711 5798 -364 216 158 0 0 chr6 167455510 167455548 -21824006 + GA-rich Low_complexity Low_complexity 4 41 0 321 267 33 33 chr6 167455846 167455966 -21823588 - L3 LINE CR1 -868 709 590 180 200 77 46 chr6 167456059 167456124 -21823430 + MIR SINE MIR 87 153 -109 618 111 33 0 chr6 167456133 167456223 -21823331 + HY4 scRNA scRNA 1 93 0 2269 111 0 13 chr6 167456239 167456555 -21822999 - AluSx SINE Alu 0 312 1 2424 81 7 0 chr6 167457476 167457772 -21821782 - AluSg SINE Alu -12 298 1 1907 128 0 0 chr6 167458314 167458572 -21820982 - AluSx SINE Alu -54 258 1 259 264 136 9 chr6 167460023 167460133 -21819421 + MER103 DNA DNA 2 125 -41 2334 103 0 0 chr6 167460795 167461096 -21818458 + AluSc SINE Alu 1 301 -8 313 237 11 54 chr6 167462422 167462515 -21817039 + MER8 DNA MER2_type 91 179 -60 299 219 16 0 chr6 167462489 167462553 -21817001 + MER2 DNA MER2_type 281 345 0 * 399 185 0 81 chr6 167462553 167462639 -21816915 - MER2 DNA MER2_type -161 78 1 223 230 53 32 chr6 167463670 167463773 -21815781 + MIR SINE MIR 16 121 -87 453 223 11 11 chr6 167463812 167463906 -21815648 + MER5B DNA MER1_type 67 160 -18 2406 82 0 13 chr6 167464157 167464461 -21815093 + AluSp SINE Alu 1 300 -13 1868 139 27 17 chr6 167466533 167466834 -21812720 - AluSx SINE Alu -8 304 1 5267 47 3 0 chr6 167466841 167467474 -21812080 - L1PA7 LINE L1 0 6154 5520 1737 180 0 3 chr6 167467506 167467828 -21811726 + AluJb SINE Alu 1 321 0 2529 68 0 3 chr6 167467828 167468138 -21811416 + AluY SINE Alu 1 309 -2 2016 117 7 7 chr6 167468906 167469187 -21810367 + AluSq SINE Alu 18 298 -15 315 0 0 0 chr6 167469647 167469682 -21809872 + (CA)n Simple_repeat Simple_repeat 2 36 0 2090 138 0 16 chr6 167470411 167470723 -21808831 - AluJb SINE Alu -5 307 1 481 314 76 0 chr6 167470857 167471042 -21808512 + L1ME3 LINE L1 5947 6145 -17 204 209 60 15 chr6 167471423 167471490 -21808064 + MIR SINE MIR 97 166 -96 208 324 14 0 chr6 167471795 167471866 -21807688 + L2 LINE L2 2575 2646 -668 2078 93 0 81 chr6 167472657 167472979 -21806575 + AluSx SINE Alu 1 296 -16 1453 158 40 50 chr6 167473079 167473377 -21806177 + AluJo SINE Alu 11 305 -7 854 193 35 6 chr6 167474261 167474432 -21805122 + FRAM SINE Alu 1 175 -1 489 163 141 0 chr6 167474460 167474552 -21805002 + U6 snRNA snRNA 3 107 0 436 303 62 26 chr6 167474766 167475070 -21804484 + L1MC4 LINE L1 5667 5981 -1827 23 33 0 0 chr6 167475150 167475180 -21804374 + AT_rich Low_complexity Low_complexity 1 30 0 875 145 6 36 chr6 167475202 167475368 -21804186 - FRAM SINE Alu -5 161 1 2588 45 0 0 chr6 167476101 167476393 -21803161 + AluY SINE Alu 2 293 -18 2198 125 0 0 chr6 167476551 167476863 -21802691 + AluSx SINE Alu 1 312 0 267 54 0 0 chr6 167477085 167477122 -21802432 + (CA)n Simple_repeat Simple_repeat 2 38 0 2139 113 0 3 chr6 167479953 167480244 -21799310 - AluJb SINE Alu -20 292 3 1856 138 3 26 chr6 167480688 167480993 -21798561 + AluJb SINE Alu 1 298 -14 2399 84 0 3 chr6 167481017 167481315 -21798239 - AluSg SINE Alu -9 301 5 251 250 132 29 chr6 167481501 167481637 -21797917 + L1MC4 LINE L1 7074 7223 -819 530 201 67 184 chr6 167481816 167481860 -21797694 + L1MC4 LINE L1 7442 7490 -552 2273 81 28 0 chr6 167481860 167482143 -21797411 + AluY SINE Alu 1 291 -20 530 201 67 184 chr6 167482143 167482235 -21797319 + L1MC4 LINE L1 7490 7591 -451 1883 113 14 55 chr6 167482235 167482527 -21797027 + AluSx SINE Alu 1 280 -32 414 0 0 0 chr6 167482527 167482573 -21796981 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 530 201 67 184 chr6 167482573 167482698 -21796856 + L1MC4 LINE L1 7590 7728 -314 1815 171 3 16 chr6 167482698 167483008 -21796546 - AluJo SINE Alu -6 306 1 530 201 67 184 chr6 167483008 167483107 -21796447 + L1MC4 LINE L1 7728 7837 -205 2362 95 0 3 chr6 167483107 167483412 -21796142 + AluSx SINE Alu 1 304 -8 530 201 67 184 chr6 167483412 167483441 -21796113 + L1MC4 LINE L1 7837 7868 -174 1846 153 7 13 chr6 167483441 167483741 -21795813 + AluJb SINE Alu 1 298 -14 530 201 67 184 chr6 167483741 167483917 -21795637 + L1MC4 LINE L1 7868 7945 -97 4007 166 34 24 chr6 167484272 167484709 -21794845 + L1MB8 LINE L1 5386 5836 -342 2266 93 7 3 chr6 167484709 167485011 -21794543 + AluSp SINE Alu 1 303 -10 4007 166 34 24 chr6 167485011 167485358 -21794196 + L1MB8 LINE L1 5836 6178 0 27 29 0 0 chr6 167485740 167485774 -21793780 + AT_rich Low_complexity Low_complexity 1 34 0 306 0 0 0 chr6 167486087 167486121 -21793433 + (A)n Simple_repeat Simple_repeat 1 34 0 1993 139 0 22 chr6 167486123 167486439 -21793115 + AluSx SINE Alu 1 309 -3 2257 98 3 16 chr6 167486629 167486935 -21792619 - AluSp SINE Alu -10 303 2 1057 58 14 0 chr6 167488026 167488165 -21791389 - AluY SINE Alu -4 307 167 294 261 68 0 chr6 167488421 167488509 -21791045 - L1ME LINE L1 -459 5662 5569 234 276 75 67 chr6 167488815 167488949 -21790605 - L3 LINE CR1 -836 741 607 471 115 0 58 chr6 167489757 167489844 -21789710 + L1MB8 LINE L1 6097 6178 0 2187 105 7 3 chr6 167489901 167490197 -21789357 - AluSx SINE Alu -15 297 1 2312 105 0 0 chr6 167490378 167490674 -21788880 - AluSx SINE Alu -12 300 5 180 0 0 0 chr6 167490678 167490698 -21788856 + (T)n Simple_repeat Simple_repeat 1 20 0 202 207 24 61 chr6 167491106 167491188 -21788366 - L2 LINE L2 -1058 2256 2178 2269 101 23 0 chr6 167491188 167491494 -21788060 + AluSq SINE Alu 1 313 0 1797 167 14 0 chr6 167491734 167492022 -21787532 + AluJo SINE Alu 3 294 -18 1822 109 46 18 chr6 167492812 167493095 -21786459 + AluSp SINE Alu 1 291 -22 501 101 0 0 chr6 167493223 167493341 -21786213 + AluSp/q SINE Alu 215 332 0 1743 128 23 52 chr6 167493352 167493658 -21785896 - AluSx SINE Alu -15 297 1 1839 130 58 17 chr6 167493668 167493961 -21785593 - AluSx SINE Alu -7 305 1 1830 102 8 4 chr6 167494106 167494352 -21785202 - AluSx SINE Alu -61 251 5 1961 147 7 3 chr6 167495190 167495496 -21784058 + AluSx SINE Alu 1 307 -5 348 161 0 0 chr6 167495521 167495583 -21783971 + (TG)n Simple_repeat Simple_repeat 2 63 0 293 143 0 0 chr6 167495601 167495657 -21783897 - L1MC4 LINE L1 -1339 6703 6648 2185 106 0 3 chr6 167495721 167496004 -21783550 + AluSx SINE Alu 1 282 -30 414 173 18 9 chr6 167496006 167496116 -21783438 + (TA)n Simple_repeat Simple_repeat 2 112 0 207 0 0 0 chr6 167496117 167496140 -21783414 + (CA)n Simple_repeat Simple_repeat 2 24 0 1803 142 66 7 chr6 167496140 167496428 -21783126 + AluSx SINE Alu 1 305 -7 2273 103 3 60 chr6 167497337 167497470 -21782084 + L1PA16 LINE L1 5804 5943 -223 2255 117 7 0 chr6 167497470 167497770 -21781784 + AluSx SINE Alu 1 302 -10 2273 103 3 60 chr6 167497770 167498005 -21781549 + L1PA16 LINE L1 5943 6151 -15 216 167 0 74 chr6 167498104 167498118 -21781436 + (TA)n Simple_repeat Simple_repeat 1 14 -36 2178 110 3 0 chr6 167498118 167498408 -21781146 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr6 167498411 167498431 -21781123 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 216 167 0 74 chr6 167498431 167498466 -21781088 + (TA)n Simple_repeat Simple_repeat 16 50 0 397 258 53 23 chr6 167498745 167498877 -21780677 - MER103 DNA DNA -18 148 13 1609 180 60 0 chr6 167499268 167499551 -21780003 - AluJb SINE Alu -12 300 1 2333 71 17 0 chr6 167499606 167499900 -21779654 + AluSp SINE Alu 1 299 -14 1961 128 32 0 chr6 167500426 167500707 -21778847 + AluSg SINE Alu 1 290 -20 1960 122 31 14 chr6 167501058 167501345 -21778209 + AluSx SINE Alu 1 292 -20 675 161 22 66 chr6 167501541 167501678 -21777876 + FLAM_C SINE Alu 1 131 -2 679 151 0 72 chr6 167502318 167502457 -21777097 - FLAM_C SINE Alu 0 133 5 800 143 0 0 chr6 167502571 167502683 -21776871 + AluSq/x SINE Alu 1 112 -201 2392 96 0 3 chr6 167502793 167503095 -21776459 + AluSq SINE Alu 1 301 -12 2023 127 7 17 chr6 167503617 167503917 -21775637 + AluSx SINE Alu 1 297 -15 243 202 0 124 chr6 167504004 167504093 -21775461 - MIR SINE MIR -21 241 164 283 47 93 0 chr6 167504323 167504366 -21775188 - MADE1 DNA Mariner -33 47 1 2180 117 3 0 chr6 167504622 167504912 -21774642 + AluSx SINE Alu 1 291 -21 847 209 76 92 chr6 167505191 167505386 -21774168 - L1ME4a LINE L1 -201 5920 5723 2308 71 7 10 chr6 167505386 167505683 -21773871 - AluY SINE Alu -15 296 1 847 209 76 92 chr6 167505683 167505711 -21773843 - L1ME4a LINE L1 -398 5723 5696 2175 114 7 10 chr6 167505711 167506010 -21773544 + AluSx SINE Alu 1 298 -14 847 209 76 92 chr6 167506010 167506153 -21773401 - L1ME4a LINE L1 -425 5696 5559 1935 170 27 3 chr6 167507401 167507736 -21771818 + MER2 DNA MER2_type 2 344 0 27 0 0 0 chr6 167507886 167507913 -21771641 + AT_rich Low_complexity Low_complexity 1 27 0 772 114 0 9 chr6 167507913 167508027 -21771527 - FLAM_C SINE Alu -17 116 4 667 209 51 0 chr6 167509011 167509188 -21770366 - HsTC2 DNA Tc2 -59 1839 1654 310 204 243 0 chr6 167509183 167509286 -21770268 - HsTC2 DNA Tc2 -1764 134 7 * 1145 167 112 9 chr6 167510171 167510404 -21769150 - AluJo SINE Alu -12 300 44 639 220 134 36 chr6 167510550 167510827 -21768727 - AluJo SINE Alu 0 312 9 2123 132 0 3 chr6 167510887 167511182 -21768372 + AluSx SINE Alu 1 294 -18 2330 99 3 0 chr6 167511182 167511474 -21768080 + AluSp SINE Alu 1 293 -20 770 167 0 42 chr6 167511664 167511808 -21767746 + FRAM SINE Alu 34 171 -5 1812 193 0 0 chr6 167511824 167512120 -21767434 - AluJo SINE Alu -16 296 1 2161 114 20 13 chr6 167512146 167512452 -21767102 + AluSq SINE Alu 1 308 -5 874 152 7 33 chr6 167512608 167512759 -21766795 + FRAM SINE Alu 12 158 -18 2051 119 0 0 chr6 167513554 167513831 -21765723 + AluSx SINE Alu 27 303 -9 674 223 96 48 chr6 167513875 167513973 -21765581 - L1MD2 LINE L1 -27 6143 6051 2192 123 3 3 chr6 167513973 167514282 -21765272 + AluSx SINE Alu 2 310 -2 674 223 96 48 chr6 167514282 167514405 -21765149 - L1MD2 LINE L1 -119 6051 5933 1620 68 0 19 chr6 167514505 167514710 -21764844 - AluY SINE Alu -37 274 74 405 163 33 43 chr6 167514710 167514802 -21764752 - L1MD2 LINE L1 -452 5907 5817 * 2497 165 66 69 chr6 167514792 167515460 -21764094 - L1MDa LINE L1 -4087 2453 1788 1289 193 105 13 chr6 167515462 167515851 -21763703 - L1MDa LINE L1 -5009 1531 1107 1296 154 18 48 chr6 167515996 167516223 -21763331 + AluJo SINE Alu 83 302 -10 1189 206 167 115 chr6 167516691 167516751 -21762803 - MLT1E LTR MaLR -7 586 531 1849 120 65 17 chr6 167516751 167517042 -21762512 + AluSx SINE Alu 1 305 -7 1189 206 167 115 chr6 167517042 167517298 -21762256 - MLT1E LTR MaLR -62 531 290 2640 126 28 14 chr6 167517298 167517720 -21761834 + MSTA LTR MaLR 1 428 0 1189 206 167 115 chr6 167517720 167517834 -21761720 - MLT1E LTR MaLR -303 290 183 825 137 0 50 chr6 167517834 167517973 -21761581 + FLAM_C SINE Alu 1 132 -1 1189 206 167 115 chr6 167517973 167517989 -21761565 - MLT1E LTR MaLR -410 183 169 1965 114 57 7 chr6 167517989 167518270 -21761284 + AluSq SINE Alu 1 295 -18 1189 206 167 115 chr6 167518270 167518377 -21761177 - MLT1E LTR MaLR -424 169 1 2039 132 7 0 chr6 167519032 167519320 -21760234 + AluSx SINE Alu 1 290 -22 629 264 75 4 chr6 167519349 167519576 -21759978 + L1M4 LINE L1 4184 4426 -1720 2439 67 0 3 chr6 167519936 167520233 -21759321 + AluY SINE Alu 1 296 -15 331 282 111 0 chr6 167520653 167520770 -21758784 + L2 LINE L2 3184 3313 0 215 282 55 94 chr6 167520772 167520974 -21758580 + L2 LINE L2 2338 2531 -783 189 220 80 0 chr6 167520983 167521033 -21758521 - L2 LINE L2 -4 3268 3215 1276 178 146 66 chr6 167521359 167521769 -21757785 - MLT1D LTR MaLR -57 448 6 1786 128 12 0 chr6 167521828 167522078 -21757476 - AluSq SINE Alu -60 253 1 2048 107 3 17 chr6 167522366 167522665 -21756889 - AluY SINE Alu -16 295 1 1874 150 25 3 chr6 167523127 167523413 -21756141 - AluJb SINE Alu -20 292 1 2270 74 40 0 chr6 167523641 167523939 -21755615 + AluY SINE Alu 1 310 -1 1991 139 7 10 chr6 167525121 167525431 -21754123 + AluSg SINE Alu 1 309 -1 2484 55 10 19 chr6 167525751 167526059 -21753495 + AluY SINE Alu 1 305 -6 437 147 0 0 chr6 167526656 167526724 -21752830 + AluJ/FLAM SINE Alu 7 74 -238 632 236 201 24 chr6 167527020 167527482 -21752072 + Charlie2 DNA MER1_type 2231 2774 -88 504 239 45 19 chr6 167527711 167527866 -21751688 + MIR SINE MIR 48 206 -56 221 97 0 0 chr6 167527885 167527916 -21751638 + MIR SINE MIR 157 187 -75 402 324 34 23 chr6 167528314 167528490 -21751064 + MER5A DNA MER1_type 11 188 -1 2434 51 14 14 chr6 167528810 167529102 -21750452 - AluY SINE Alu -19 292 1 2445 67 3 3 chr6 167529102 167529399 -21750155 - AluSq SINE Alu -14 299 3 213 336 76 17 chr6 167529562 167529681 -21749873 - L2 LINE L2 -2 3311 3186 614 143 0 0 chr6 167529738 167529829 -21749725 + AluS SINE Alu 2 92 -220 423 262 0 0 chr6 167529979 167530151 -21749403 + G-rich Low_complexity Low_complexity 1 172 0 340 281 10 52 chr6 167530246 167530438 -21749116 - AluJo SINE Alu -32 270 87 1289 193 105 13 chr6 167530587 167530976 -21748578 + L1MDa LINE L1 1107 1531 -5009 2497 165 66 69 chr6 167530978 167531646 -21747908 + L1MDa LINE L1 1788 2453 -4087 946 177 79 63 chr6 167531636 167531728 -21747826 + L1MD2 LINE L1 5817 5906 -453 * 1773 61 9 17 chr6 167531728 167531959 -21747595 + AluY SINE Alu 74 302 -9 946 177 79 63 chr6 167531959 167532120 -21747434 + L1MD2 LINE L1 5906 6074 -285 229 196 0 0 chr6 167532123 167532174 -21747380 - AluSc SINE Alu -1 298 248 2388 92 0 0 chr6 167532582 167532877 -21746677 + AluSg SINE Alu 1 295 -15 387 243 147 23 chr6 167533094 167533271 -21746283 + MLT1L LTR MaLR 160 358 -257 286 254 201 8 chr6 167533479 167533613 -21745941 - MIR SINE MIR -83 179 20 1005 198 48 0 chr6 167533947 167534134 -21745420 + AluJo SINE Alu 1 196 -116 717 73 0 0 chr6 167534619 167534715 -21744839 + (TA)n Simple_repeat Simple_repeat 1 96 0 3262 86 32 2 chr6 167535237 167535677 -21743877 - MLT2A2 LTR ERVL 0 453 1 921 194 6 0 chr6 167536083 167536253 -21743301 - FRAM SINE Alu -5 171 1 720 314 29 8 chr6 167536518 167536763 -21742791 - MIR SINE MIR -2 260 11 796 220 11 16 chr6 167536805 167536987 -21742567 - AluJo SINE Alu -12 300 120 2217 120 0 7 chr6 167537265 167537566 -21741988 - AluSq SINE Alu -14 299 1 1314 284 95 38 chr6 167537584 167538218 -21741336 + L2 LINE L2 613 1282 -2032 354 305 0 0 chr6 167538223 167538328 -21741226 + MER113 DNA MER1_type? 3 107 -414 6811 201 74 32 chr6 167538369 167540352 -21739202 + Cheshire DNA MER1_type 1 2114 -306 2202 79 4 0 chr6 167540352 167540617 -21738937 + AluSp SINE Alu 1 266 -47 6811 201 74 32 chr6 167540617 167540739 -21738815 + Cheshire DNA MER1_type 2114 2229 -191 1065 163 4 90 chr6 167541809 167541989 -21737565 - MLT1A1 LTR MaLR -3 362 207 1753 131 77 4 chr6 167541989 167542263 -21737291 - AluSx SINE Alu -18 294 1 1065 163 4 90 chr6 167542263 167542327 -21737227 - MLT1A1 LTR MaLR -158 207 139 2457 74 3 0 chr6 167542424 167542723 -21736831 - AluY SINE Alu -11 300 1 1604 132 30 0 chr6 167542738 167543003 -21736551 - L1MA5A LINE L1 -3 6294 6022 749 195 13 20 chr6 167543010 167543159 -21736395 - MLT1A1 LTR MaLR -217 148 1 2220 110 7 0 chr6 167544026 167544327 -21735227 + AluSx SINE Alu 1 303 -9 1242 125 37 118 chr6 167544619 167544737 -21734817 - AluJo SINE Alu -13 299 214 2415 105 0 0 chr6 167544737 167545041 -21734513 - AluSx SINE Alu -8 304 1 1242 125 37 118 chr6 167545041 167545194 -21734360 - AluJo SINE Alu -98 214 50 2192 119 3 6 chr6 167545239 167545550 -21734004 - AluSx SINE Alu -2 310 1 264 277 54 1 chr6 167545580 167545662 -21733892 + MIR SINE MIR 52 136 -72 * 305 308 64 23 chr6 167545659 167545831 -21733723 + MIR SINE MIR 48 226 -36 707 182 140 0 chr6 167545943 167546086 -21733468 - MER45A DNA AcHobo 0 178 16 21 0 0 0 chr6 167546599 167546620 -21732934 + GC_rich Low_complexity Low_complexity 1 21 0 339 345 0 0 chr6 167547128 167547247 -21732307 + (CA)n Simple_repeat Simple_repeat 1 119 0 236 246 0 0 chr6 167547796 167547853 -21731701 - L1MC4 LINE L1 -133 7909 7853 1687 197 7 3 chr6 167547894 167548198 -21731356 - AluJb SINE Alu -7 305 1 1462 221 154 9 chr6 167548202 167548454 -21731100 - L1MC4 LINE L1 -180 7862 7648 213 65 0 0 chr6 167548454 167548485 -21731069 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1462 221 154 9 chr6 167548485 167548698 -21730856 - L1MC4 LINE L1 -394 7648 7329 498 311 58 15 chr6 167549141 167549347 -21730207 + MIR SINE MIR 48 262 0 1672 137 34 8 chr6 167549544 167549807 -21729747 + AluJb SINE Alu 35 304 -8 2021 105 84 0 chr6 167550097 167550383 -21729171 + AluSq SINE Alu 2 311 -2 208 282 26 13 chr6 167550589 167550667 -21728887 + MIR SINE MIR 112 190 -72 1644 155 11 4 chr6 167550802 167551067 -21728487 - L1MB3 LINE L1 -15 6168 5902 231 224 0 0 chr6 167551068 167551117 -21728437 - L1MB2 LINE L1 -228 5943 5895 * 265 180 0 0 chr6 167551103 167551153 -21728401 - L1MB2 LINE L1 -220 5951 5902 231 246 0 0 chr6 167551189 167551246 -21728308 - L1MB2 LINE L1 -220 5951 5895 * 310 175 0 0 chr6 167551232 167551289 -21728265 - L1MB2 LINE L1 -220 5951 5895 292 211 0 0 chr6 167551275 167551332 -21728222 - L1MB2 LINE L1 -220 5951 5895 * 265 196 0 0 chr6 167551318 167551369 -21728185 - L1MB3 LINE L1 -232 5951 5901 * 266 211 0 0 chr6 167551361 167551418 -21728136 - L1MB2 LINE L1 -220 5951 5895 * 288 193 0 0 chr6 167551404 167551461 -21728093 - L1MB2 LINE L1 -220 5951 5895 * 296 193 0 0 chr6 167551447 167551504 -21728050 - L1MB2 LINE L1 -220 5951 5895 289 193 0 0 chr6 167551490 167551547 -21728007 - L1MB2 LINE L1 -220 5951 5895 * 295 190 0 0 chr6 167551533 167551591 -21727963 - L1MB2 LINE L1 -220 5951 5894 268 228 0 0 chr6 167551576 167551633 -21727921 - L1MB2 LINE L1 -220 5951 5895 * 256 228 0 0 chr6 167551619 167551676 -21727878 - L1MB2 LINE L1 -220 5951 5895 * 275 211 0 0 chr6 167551662 167551719 -21727835 - L1MB2 LINE L1 -220 5951 5895 275 211 0 0 chr6 167551705 167551762 -21727792 - L1MB2 LINE L1 -220 5951 5895 275 211 0 0 chr6 167551748 167551805 -21727749 - L1MB2 LINE L1 -220 5951 5895 266 211 0 0 chr6 167551791 167551848 -21727706 - L1MB2 LINE L1 -220 5951 5895 * 288 193 0 0 chr6 167551834 167551891 -21727663 - L1MB2 LINE L1 -220 5951 5895 * 296 193 0 0 chr6 167551877 167551934 -21727620 - L1MB2 LINE L1 -220 5951 5895 289 193 0 0 chr6 167551920 167551977 -21727577 - L1MB2 LINE L1 -220 5951 5895 * 302 190 0 0 chr6 167551963 167552021 -21727533 - L1MB2 LINE L1 -220 5951 5894 264 222 0 0 chr6 167552009 167552063 -21727491 - L1MB2 LINE L1 -223 5948 5895 * 2880 148 8 25 chr6 167552049 167552570 -21726984 - L1MB3 LINE L1 -232 5951 5440 1159 250 43 25 chr6 167552757 167553291 -21726263 + L1MEc LINE L1 2151 2657 -3558 1456 189 163 9 chr6 167553569 167553918 -21725636 + L1MD3 LINE L1 7580 7982 -13 820 196 7 7 chr6 167554527 167554680 -21724874 + FRAM SINE Alu 1 152 -24 240 233 183 0 chr6 167555137 167555197 -21724357 - L2 LINE L2 -2 3270 3200 2198 87 0 30 chr6 167555290 167555588 -21723966 + AluSc SINE Alu 1 289 -20 324 239 43 82 chr6 167555589 167555773 -21723781 - L2 LINE L2 -112 3201 3025 2274 113 0 3 chr6 167555843 167556154 -21723400 - AluSx SINE Alu -1 311 2 481 120 152 88 chr6 167556166 167556291 -21723263 - L1MC4 LINE L1 -484 7558 7426 964 219 116 13 chr6 167556313 167556708 -21722846 + L1MC4 LINE L1 7579 8042 0 27 108 0 0 chr6 167556811 167556922 -21722632 + AT_rich Low_complexity Low_complexity 1 111 0 2301 76 0 3 chr6 167557806 167558097 -21721457 + AluY SINE Alu 3 292 -19 1846 166 0 16 chr6 167558217 167558531 -21721023 + AluJo SINE Alu 1 309 -3 2097 153 5 23 chr6 167559110 167559463 -21720091 + MLT2D LTR ERVL 69 414 0 386 183 125 58 chr6 167559629 167559749 -21719805 - ORSL DNA AcHobo 0 275 148 345 182 0 0 chr6 167559752 167559807 -21719747 + Tigger5 DNA MER2_type 1 55 -2268 * 380 219 0 0 chr6 167559776 167559849 -21719705 + Tigger5 DNA MER2_type 2251 2323 0 839 129 50 7 chr6 167559849 167559989 -21719565 - ORSL DNA AcHobo -129 146 1 2445 88 3 0 chr6 167560043 167560351 -21719203 + AluSc SINE Alu 1 309 0 2022 127 3 10 chr6 167560659 167560959 -21718595 + AluSq SINE Alu 2 299 -14 1203 116 0 0 chr6 167560962 167561138 -21718416 + AluSg/x SINE Alu 126 301 0 2381 87 10 0 chr6 167561138 167561448 -21718106 + AluSp SINE Alu 1 313 0 458 45 0 15 chr6 167561598 167561664 -21717890 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 2065 110 29 0 chr6 167562245 167562526 -21717028 + AluSg SINE Alu 1 289 -21 256 333 0 0 chr6 167562559 167562634 -21716920 + MIR SINE MIR 1 75 -187 209 131 377 0 chr6 167562636 167562697 -21716857 - L2 LINE L2 -1 3271 3188 2324 105 10 0 chr6 167563134 167563438 -21716116 - AluSx SINE Alu -5 307 1 207 333 0 0 chr6 167563803 167563863 -21715691 + (TTCA)n Simple_repeat Simple_repeat 1 60 0 309 258 0 0 chr6 167563880 167563946 -21715608 - L2 LINE L2 -4 3309 3244 487 161 123 46 chr6 167564003 167564133 -21715421 - L2 LINE L2 -1 3312 3173 233 162 122 14 chr6 167564178 167564252 -21715302 + Charlie7 DNA MER1_type 2440 2521 -91 1620 164 17 14 chr6 167564253 167564545 -21715009 - AluJo SINE Alu -18 294 2 2209 125 0 0 chr6 167564554 167564859 -21714695 - AluSx SINE Alu -5 307 3 236 276 23 58 chr6 167564954 167565041 -21714513 + MIR SINE MIR 16 99 -163 643 258 186 46 chr6 167565343 167565739 -21713815 + L1ME4a LINE L1 5528 5867 -254 2182 110 0 13 chr6 167565739 167566038 -21713516 + AluSx SINE Alu 11 305 -7 2203 131 0 6 chr6 167566038 167566351 -21713203 + AluSx SINE Alu 1 312 0 643 258 186 46 chr6 167566351 167566410 -21713144 + L1ME4a LINE L1 5866 6048 -73 1373 164 18 0 chr6 167566503 167566729 -21712825 + AluJb SINE Alu 83 312 0 477 127 0 0 chr6 167566729 167566808 -21712746 + (GGGA)n Simple_repeat Simple_repeat 2 80 0 312 83 83 0 chr6 167567647 167567695 -21711859 - MER4C LTR ERV1 0 465 414 2002 121 11 4 chr6 167567696 167567976 -21711578 - AluSx SINE Alu -24 288 7 3464 117 10 17 chr6 167567981 167568190 -21711364 - MER4D LTR ERV1 -351 521 312 2400 96 0 0 chr6 167568190 167568491 -21711063 + AluSc SINE Alu 6 306 -3 3464 117 10 17 chr6 167568491 167568802 -21710752 - MER4D LTR ERV1 -560 312 5 3052 158 36 80 chr6 167568911 167569453 -21710101 - LTR9 LTR ERV1 0 612 48 2100 119 13 3 chr6 167569453 167569756 -21709798 + AluSp SINE Alu 1 306 -7 3052 158 36 80 chr6 167569756 167569822 -21709732 - LTR9 LTR ERV1 -564 48 31 2227 93 3 37 chr6 167569822 167570143 -21709411 - AluSg SINE Alu 0 310 1 3052 158 36 80 chr6 167570143 167570173 -21709381 - LTR9 LTR ERV1 -581 31 1 1526 88 9 5 chr6 167570820 167571035 -21708519 - MER41B LTR ERV1 0 635 420 4628 59 6 31 chr6 167571040 167572104 -21707450 - MER11A LTR ERVK 0 1266 1 2560 134 35 2 chr6 167572107 167572511 -21707043 - MER41B LTR ERV1 -218 417 1 5178 98 21 6 chr6 167572759 167573440 -21706114 + LTR8 LTR ERV1 1 691 0 910 212 0 18 chr6 167573847 167574017 -21705537 + MER41C LTR ERV1 1 167 -387 2256 94 0 10 chr6 167574101 167574410 -21705144 + AluY SINE Alu 1 306 -5 1124 135 0 0 chr6 167574416 167574572 -21704982 + AluSp SINE Alu 140 295 -18 816 152 48 0 chr6 167574572 167574717 -21704837 + MER41C LTR ERV1 212 363 -191 1730 184 98 37 chr6 167574742 167575220 -21704334 + LTR10A LTR ERV1 82 630 -3 1258 172 0 31 chr6 167575220 167575438 -21704116 + MER41C LTR ERV1 344 554 0 2305 108 3 0 chr6 167575804 167576101 -21703453 + AluSx SINE Alu 1 298 -14 2649 143 67 12 chr6 167576248 167576735 -21702819 - MER61E LTR ERV1 0 569 2 305 264 25 104 chr6 167577215 167577326 -21702228 - L1MC4a LINE L1 -1884 5924 5806 2455 86 3 0 chr6 167577326 167577630 -21701924 - AluY SINE Alu -6 305 1 305 264 25 104 chr6 167577630 167577682 -21701872 - L1MC4a LINE L1 -2002 5806 5777 1599 182 35 103 chr6 167577682 167578165 -21701389 + LTR7 LTR ERV1 1 450 0 305 264 25 104 chr6 167578165 167578201 -21701353 - L1MC4a LINE L1 -2031 5777 5740 756 158 0 0 chr6 167578468 167578601 -21700953 + CT-rich Low_complexity Low_complexity 3 135 0 2053 121 7 3 chr6 167578619 167578917 -21700637 - AluSc SINE Alu -10 299 1 1097 119 6 0 chr6 167578917 167579076 -21700478 - AluSc SINE Alu -15 294 135 1543 173 7 40 chr6 167579293 167579593 -21699961 - AluJb SINE Alu -22 290 1 263 146 18 0 chr6 167580069 167580124 -21699430 + GA-rich Low_complexity Low_complexity 1 56 0 2083 109 22 0 chr6 167580964 167581238 -21698316 + AluSg SINE Alu 5 284 -26 2167 114 0 0 chr6 167581774 167582073 -21697481 + AluSc SINE Alu 3 301 -8 1323 224 94 3 chr6 167582161 167582447 -21697107 - MSTD LTR MaLR 0 396 85 378 262 29 95 chr6 167582447 167582794 -21696760 - L1ME4a LINE L1 -287 5834 5511 28 29 0 0 chr6 167582816 167582851 -21696703 + AT_rich Low_complexity Low_complexity 1 35 0 2155 104 18 0 chr6 167582851 167583130 -21696424 - AluSg SINE Alu -26 284 1 245 273 134 21 chr6 167583153 167583347 -21696207 - L1ME4a LINE L1 -2332 5476 5261 688 168 65 45 chr6 167583490 167583645 -21695909 + MLT1A1 LTR MaLR 2 159 -206 1394 171 0 5 chr6 167583716 167583938 -21695616 + AluJb SINE Alu 1 221 -91 423 314 102 25 chr6 167583943 167584035 -21695519 + L1 LINE L1 4025 4108 -2038 2483 94 34 55 chr6 167584035 167584418 -21695136 - THE1C LTR MaLR 0 375 1 423 314 102 25 chr6 167584418 167584719 -21694835 + L1 LINE L1 4108 4384 -1762 2270 123 7 0 chr6 167584719 167585028 -21694526 + AluSx SINE Alu 1 311 -1 423 314 102 25 chr6 167585028 167585234 -21694320 + L1 LINE L1 4384 4701 -1445 2425 81 0 3 chr6 167585441 167585748 -21693806 - AluY SINE Alu -5 306 1 2036 106 3 3 chr6 167586029 167586311 -21693243 - AluY SINE Alu -29 282 1 2371 90 3 3 chr6 167586343 167586643 -21692911 + AluSp SINE Alu 1 300 -13 1765 147 39 3 chr6 167587027 167587313 -21692241 - AluJb SINE Alu -16 296 1 452 240 27 93 chr6 167588028 167588211 -21691343 + Charlie8 DNA MER1_type 1 171 -2246 1429 191 3 53 chr6 167588698 167589018 -21690536 - AluJo SINE Alu -8 304 1 2293 99 0 0 chr6 167589469 167589762 -21689792 + AluSc SINE Alu 17 309 0 2705 266 93 24 chr6 167591839 167591938 -21687616 + L2 LINE L2 1681 1772 -1542 2185 106 10 3 chr6 167591938 167592231 -21687323 + AluSq SINE Alu 1 295 -18 2705 266 93 24 chr6 167592231 167593012 -21686542 + L2 LINE L2 1772 2622 -692 1058 242 32 53 chr6 167593052 167593330 -21686224 - MLT1A2 LTR MaLR 0 374 165 2138 138 0 6 chr6 167593330 167593641 -21685913 - AluSx SINE Alu -3 309 1 1058 242 32 53 chr6 167593641 167593801 -21685753 - MLT1A2 LTR MaLR -209 165 3 1471 277 88 19 chr6 167593804 167594343 -21685211 + L2 LINE L2 2633 3222 -91 854 158 0 8 chr6 167594343 167594470 -21685084 - FLAM_A SINE Alu -7 126 1 1471 277 88 19 chr6 167594470 167594569 -21684985 + L2 LINE L2 3222 3313 0 304 305 46 26 chr6 167594573 167594724 -21684830 - HAL1b LINE L1 -7 1341 1188 395 107 13 0 chr6 167594767 167594842 -21684712 + (TA)n Simple_repeat Simple_repeat 2 77 0 2060 154 0 0 chr6 167594842 167595134 -21684420 - AluSx SINE Alu -20 292 1 1807 185 0 3 chr6 167595173 167595476 -21684078 - AluJo SINE Alu -10 302 1 461 224 83 68 chr6 167595480 167595685 -21683869 - L1ME4a LINE L1 -296 5825 5618 3651 148 20 36 chr6 167596266 167596926 -21682628 - L1MA5 LINE L1 0 6300 5652 306 302 10 21 chr6 167597753 167597849 -21681705 + MIR SINE MIR 34 128 -80 2171 90 27 0 chr6 167598092 167598391 -21681163 + AluSx SINE Alu 1 307 -5 1665 202 3 10 chr6 167598575 167598887 -21680667 - AluJo SINE Alu -1 311 2 951 120 0 30 chr6 167598899 167599032 -21680522 - FLAM_C SINE Alu -4 129 1 1654 227 43 9 chr6 167599396 167599891 -21679663 + MER74A LTR ERVL 4 558 0 761 292 74 25 chr6 167600139 167600492 -21679062 - L2 LINE L2 0 3313 2944 41 0 0 0 chr6 167601645 167601686 -21677868 + AT_rich Low_complexity Low_complexity 1 41 0 2002 115 17 21 chr6 167601686 167601839 -21677715 - AluSx SINE Alu -25 287 135 186 71 0 0 chr6 167601839 167601867 -21677687 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2040 100 7 21 chr6 167601869 167602158 -21677396 - AluY SINE Alu -26 285 1 2002 115 17 21 chr6 167602158 167602289 -21677265 - AluSx SINE Alu -178 134 1 804 158 0 8 chr6 167602553 167602680 -21676874 - FLAM_C SINE Alu -17 126 1 414 250 78 9 chr6 167602853 167602969 -21676585 - L1MC/D LINE L1 -2109 5699 5576 1909 159 22 32 chr6 167603556 167603927 -21675627 - MLT1A2 LTR MaLR -7 367 1 468 71 12 107 chr6 167603927 167604011 -21675543 + MADE1 DNA Mariner 1 76 -4 535 271 12 98 chr6 167604017 167604335 -21675219 - L1MC4 LINE L1 -6 8036 7636 1682 196 49 70 chr6 167604371 167604841 -21674713 + MLT1F1 LTR MaLR 70 529 -38 1291 263 105 39 chr6 167605050 167605733 -21673821 - L1MC5 LINE L1 -548 7494 6753 2350 88 13 3 chr6 167605733 167606040 -21673514 - AluSx SINE Alu -2 310 1 1291 263 105 39 chr6 167606040 167606135 -21673419 - L1MC5 LINE L1 -1289 6753 6666 394 209 0 0 chr6 167606160 167606239 -21673315 - MIR SINE MIR -84 124 46 24 0 0 0 chr6 167606476 167606500 -21673054 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr6 167606674 167606702 -21672852 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr6 167607026 167607062 -21672492 + AT_rich Low_complexity Low_complexity 1 36 0 2160 118 3 0 chr6 167607395 167607684 -21671870 + AluSx SINE Alu 1 290 -22 524 314 39 56 chr6 167607694 167607825 -21671729 + MIR SINE MIR 3 120 -142 2125 111 7 16 chr6 167607825 167608132 -21671422 - AluSg SINE Alu -6 304 1 524 314 39 56 chr6 167608132 167608256 -21671298 + MIR SINE MIR 120 245 -17 829 334 37 40 chr6 167608398 167608802 -21670752 - L3 LINE CR1 -2 1575 1173 768 186 0 8 chr6 167608918 167609047 -21670507 + FLAM_C SINE Alu 5 132 -1 2105 142 3 0 chr6 167609124 167609434 -21670120 + AluSx SINE Alu 1 311 -1 226 264 14 42 chr6 167609472 167609544 -21670010 - HAL1b LINE L1 -437 911 842 * 6172 138 16 55 chr6 167609541 167610077 -21669477 - L1MA4A LINE L1 0 6303 5748 2315 87 0 3 chr6 167610077 167610376 -21669178 + AluY SINE Alu 1 298 -13 6172 138 16 55 chr6 167610376 167610793 -21668761 - L1MA4A LINE L1 -555 5748 5316 1786 126 8 4 chr6 167610793 167611071 -21668483 + AluSx SINE Alu 27 305 0 6172 138 16 55 chr6 167611071 167611957 -21667597 - L1MA4A LINE L1 -987 5316 4551 2165 141 3 0 chr6 167611957 167612262 -21667292 - AluSx SINE Alu -6 306 1 6172 138 16 55 chr6 167612262 167612695 -21666859 - L1MA4A LINE L1 -1752 4551 4103 5255 237 17 52 chr6 167612683 167614022 -21665532 - L1PBb LINE L1 -2777 4072 2750 * 1490 79 10 5 chr6 167614022 167614225 -21665329 - L1MA2 LINE L1 0 6304 6101 5255 237 17 52 chr6 167614225 167615501 -21664053 - L1PBb LINE L1 -4099 2750 1431 244 292 0 0 chr6 167615501 167615566 -21663988 - L1PBb LINE L1 -4718 2131 2067 415 250 0 0 chr6 167615623 167615715 -21663839 - L1PBb LINE L1 -5284 1565 1474 479 351 73 51 chr6 167616474 167616981 -21662573 - L1PBb LINE L1 -6318 532 15 7975 191 58 11 chr6 167616981 167618627 -21660927 - L1M2 LINE L1 -5125 1724 2 22 0 0 0 chr6 167618820 167618842 -21660712 + AT_rich Low_complexity Low_complexity 1 22 0 186 367 181 17 chr6 167618865 167619042 -21660512 - L3 LINE CR1 -444 1133 928 469 306 196 0 chr6 167619100 167619335 -21660219 - L3 LINE CR1 -173 1404 1124 422 148 76 148 chr6 167619341 167619551 -21660003 - MER5C DNA MER1_type -6 318 124 2316 98 7 0 chr6 167619873 167620169 -21659385 - AluSp SINE Alu -15 298 1 912 108 0 8 chr6 167620359 167620479 -21659075 - AluJb SINE Alu -190 122 4 2371 72 16 13 chr6 167620777 167621082 -21658472 + AluSg SINE Alu 1 306 -4 302 224 86 17 chr6 167621113 167621229 -21658325 - MER5C DNA MER1_type -200 124 1 432 328 8 0 chr6 167621243 167621374 -21658180 - L3 LINE CR1 -467 1110 979 935 277 63 24 chr6 167621637 167622016 -21657538 - L1MC4a LINE L1 -1902 5906 5513 21 0 0 0 chr6 167622075 167622096 -21657458 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr6 167622401 167622427 -21657127 + AT_rich Low_complexity Low_complexity 1 26 0 1314 224 74 18 chr6 167623300 167623626 -21655928 - MER2 DNA MER2_type 0 344 1 25 0 0 0 chr6 167624260 167624285 -21655269 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr6 167624376 167624407 -21655147 + AT_rich Low_complexity Low_complexity 1 31 0 2175 106 3 0 chr6 167624410 167624692 -21654862 + AluSp SINE Alu 15 297 -16 1567 198 11 0 chr6 167624820 167625103 -21654451 - AluJb SINE Alu -26 286 1 2195 99 13 13 chr6 167625600 167625902 -21653652 - AluSx SINE Alu -10 302 1 2910 77 6 8 chr6 167626512 167626877 -21652677 - THE1B LTR MaLR 0 364 1 1290 198 128 4 chr6 167626912 167627170 -21652384 + AluJb SINE Alu 1 290 -12 449 277 28 107 chr6 167627251 167627390 -21652164 + MIR SINE MIR 27 139 -123 911 261 54 39 chr6 167627390 167627723 -21651831 - MER46C DNA MER2_type 0 338 1 449 277 28 107 chr6 167627723 167627836 -21651718 + MIR SINE MIR 139 259 -3 689 37 12 0 chr6 167628317 167628398 -21651156 + AluY SINE Alu 216 297 -14 2533 74 0 3 chr6 167628468 167628778 -21650776 - AluSc SINE Alu 0 309 1 2172 177 17 3 chr6 167628980 167629341 -21650213 + MER47A DNA MER2_type 1 366 0 1251 170 38 5 chr6 167630077 167630289 -21649265 - MER20 DNA MER1_type 0 219 1 2031 144 77 0 chr6 167630602 167630915 -21648639 + MER1B DNA MER1_type 1 337 0 2017 181 72 16 chr6 167631162 167631604 -21647950 - MLT1C LTR MaLR 0 467 1 334 248 22 24 chr6 167632859 167632963 -21646591 - MIR SINE MIR -92 116 15 182 283 65 54 chr6 167633669 167633761 -21645793 - L3 LINE CR1 -3 1574 1482 15606 117 24 16 chr6 167633781 167635503 -21644051 - Tigger1 DNA MER2_type -35 2383 676 2467 153 56 10 chr6 167635503 167635916 -21643638 - MSTB1 LTR MaLR 0 432 1 15606 117 24 16 chr6 167635916 167635937 -21643617 - Tigger1 DNA MER2_type -1742 676 657 2498 85 0 0 chr6 167635937 167636243 -21643311 - AluSx SINE Alu -6 306 1 15606 117 24 16 chr6 167636243 167636413 -21643141 - Tigger1 DNA MER2_type -1761 657 490 2167 125 0 3 chr6 167636413 167636708 -21642846 - AluSx SINE Alu -18 294 1 15606 117 24 16 chr6 167636708 167637156 -21642398 - Tigger1 DNA MER2_type -1928 490 1 207 329 105 0 chr6 167637176 167637252 -21642302 - L3 LINE CR1 -124 1453 1370 28 29 0 0 chr6 167637257 167637292 -21642262 + AT_rich Low_complexity Low_complexity 1 35 0 254 287 43 11 chr6 167637328 167637422 -21642132 + L1ME LINE L1 5757 5853 -268 21 0 0 0 chr6 167637494 167637515 -21642039 + AT_rich Low_complexity Low_complexity 1 21 0 255 355 36 14 chr6 167637636 167637774 -21641780 - L3 LINE CR1 -200 1377 1237 22 0 0 0 chr6 167638608 167638630 -21640924 + AT_rich Low_complexity Low_complexity 1 22 0 270 364 106 61 chr6 167639216 167639595 -21639959 - L2 LINE L2 -8 3264 2869 2411 83 0 0 chr6 167639733 167640034 -21639520 - AluY SINE Alu -10 301 1 212 325 99 37 chr6 167640184 167640375 -21639179 - L2 LINE L2 -1406 1908 1706 1069 90 4 192 chr6 167641151 167641385 -21638169 + MER30B DNA MER1_type 1 190 0 1805 162 18 0 chr6 167641609 167641918 -21637636 + AluJb SINE Alu 1 314 0 2050 129 14 4 chr6 167641922 167642231 -21637323 + AluSx SINE Alu 1 312 0 307 354 149 25 chr6 167642299 167642828 -21636726 + L2 LINE L2 2285 2879 -435 227 278 76 42 chr6 167642924 167643068 -21636486 + L2 LINE L2 2905 3053 -219 2383 75 0 3 chr6 167644451 167644745 -21634809 - AluY SINE Alu -18 293 1 28 61 0 0 chr6 167644749 167644798 -21634756 + AT_rich Low_complexity Low_complexity 1 49 0 2239 121 38 62 chr6 167644989 167645026 -21634528 - THE1B LTR MaLR 0 364 328 2034 115 0 11 chr6 167645026 167645346 -21634208 + AluSx SINE Alu 1 317 0 2239 121 38 62 chr6 167645346 167645680 -21633874 - THE1B LTR MaLR -36 328 1 1195 232 42 101 chr6 167646442 167646938 -21632616 - MLT1J LTR MaLR -40 471 5 397 228 132 0 chr6 167647194 167647308 -21632246 + MIR SINE MIR 48 176 -86 23 0 0 0 chr6 167647522 167647545 -21632009 + AT_rich Low_complexity Low_complexity 1 23 0 2412 97 3 0 chr6 167647593 167647902 -21631652 - AluSp SINE Alu -3 310 1 1785 173 0 10 chr6 167648485 167648780 -21630774 + AluJb SINE Alu 1 292 -20 2290 92 3 13 chr6 167649773 167650077 -21629477 - AluSp SINE Alu -12 301 1 2006 123 10 20 chr6 167650087 167650379 -21629175 - AluSx SINE Alu -23 289 1 237 293 78 9 chr6 167652458 167652574 -21626980 - L2 LINE L2 -452 2862 2739 205 119 48 0 chr6 167652589 167652631 -21626923 + (CAGAGA)n Simple_repeat Simple_repeat 3 46 0 331 82 102 0 chr6 167653280 167653329 -21626225 - MLT1C LTR MaLR 0 467 414 678 212 104 48 chr6 167653348 167653598 -21625956 - MLT1C LTR MaLR -203 264 1 1483 175 22 77 chr6 167653682 167653968 -21625586 - L1MB7 LINE L1 -21 6163 5900 2339 128 42 28 chr6 167653968 167654327 -21625227 - THE1B LTR MaLR 0 364 1 1483 175 22 77 chr6 167654327 167654405 -21625149 - L1MB7 LINE L1 -284 5900 5819 267 125 0 0 chr6 167654405 167654440 -21625114 - MLT2B1 LTR ERVL 0 520 486 228 173 19 19 chr6 167654440 167654466 -21625088 - MLT2D LTR ERVL -3 517 492 267 79 0 0 chr6 167654466 167654504 -21625050 + (TG)n Simple_repeat Simple_repeat 2 39 0 228 173 19 19 chr6 167654504 167654529 -21625025 - MLT2D LTR ERVL -27 493 466 1228 202 229 7 chr6 167654564 167654866 -21624688 - MLT2D LTR ERVL -45 369 1 893 137 7 0 chr6 167654866 167655012 -21624542 - L1MB7 LINE L1 -361 5823 5677 23 0 0 0 chr6 167655242 167655265 -21624289 + AT_rich Low_complexity Low_complexity 1 23 0 1693 107 104 53 chr6 167655428 167655746 -21623808 + THE1C LTR MaLR 1 338 -37 2349 101 0 0 chr6 167655746 167656052 -21623502 - AluSq SINE Alu -7 306 1 1693 107 104 53 chr6 167656052 167656070 -21623484 + THE1C LTR MaLR 338 354 -21 551 240 189 46 chr6 167656532 167656898 -21622656 - MLT1J LTR MaLR 0 511 94 1467 98 2 8 chr6 167657367 167657598 -21621956 + L1MA5 LINE L1 5989 6217 -86 3364 173 52 34 chr6 167657680 167657704 -21621850 - L1M3f LINE L1 -4622 706 684 3387 126 8 2 chr6 167657704 167658204 -21621350 - L1MA5 LINE L1 0 6300 5798 3364 173 52 34 chr6 167658204 167658854 -21620700 - L1M3f LINE L1 -4644 684 20 2146 130 0 0 chr6 167658854 167659153 -21620401 - AluSx SINE Alu -13 299 1 3763 197 58 21 chr6 167659175 167660095 -21619459 - L1 LINE L1 -3101 4464 3515 6856 177 59 7 chr6 167660189 167661649 -21617905 - L1 LINE L1 -3957 3609 2074 272 231 27 129 chr6 167661619 167661766 -21617788 - L1 LINE L1 -6084 1482 1351 * 1445 224 36 43 chr6 167661759 167662151 -21617403 - L1 LINE L1 -6820 746 358 777 246 50 43 chr6 167663307 167663608 -21615946 - L1MC4 LINE L1 -3 8039 7737 1910 111 4 7 chr6 167663975 167664246 -21615308 + AluSc SINE Alu 29 298 -11 2328 177 14 3 chr6 167664248 167664609 -21614945 - MLT1A1 LTR MaLR 0 365 1 2125 110 3 7 chr6 167664661 167664960 -21614594 - AluSg1 SINE Alu -11 298 1 3587 166 57 35 chr6 167666013 167666095 -21613459 - L1MB7 LINE L1 -2 6182 6103 1765 150 4 0 chr6 167666095 167666361 -21613193 + AluSx SINE Alu 23 289 -23 3587 166 57 35 chr6 167666361 167666985 -21612569 - L1MB7 LINE L1 -81 6103 5461 2081 168 11 16 chr6 167667046 167667410 -21612144 - L1MB4 LINE L1 0 6180 5819 1921 99 58 51 chr6 167667411 167667704 -21611850 - AluSx SINE Alu -17 295 1 622 206 0 0 chr6 167668724 167668831 -21610723 - U6 snRNA snRNA 0 107 1 2314 131 46 11 chr6 167669594 167669944 -21609610 - MLT1A1 LTR MaLR 0 365 4 414 39 0 0 chr6 167670353 167670405 -21609149 + (T)n Simple_repeat Simple_repeat 1 52 0 260 329 82 41 chr6 167670469 167670639 -21608915 - MIR SINE MIR -7 255 79 285 277 117 68 chr6 167671383 167671589 -21607965 - MIR SINE MIR -38 224 9 2033 143 33 0 chr6 167671680 167671981 -21607573 + AluSx SINE Alu 1 311 -1 1465 142 0 0 chr6 167672574 167672792 -21606762 + AluSg/x SINE Alu 84 301 -9 280 268 98 67 chr6 167672826 167673020 -21606534 + L1MC4 LINE L1 7602 7801 -241 231 188 0 0 chr6 167673141 167673189 -21606365 + A-rich Low_complexity Low_complexity 1 48 0 29 84 0 0 chr6 167673725 167673796 -21605758 + AT_rich Low_complexity Low_complexity 1 71 0 216 382 35 52 chr6 167674707 167674982 -21604572 + L2 LINE L2 452 721 -2593 2453 86 0 0 chr6 167674982 167675285 -21604269 - AluSc SINE Alu -6 303 1 216 382 35 52 chr6 167675285 167675357 -21604197 + L2 LINE L2 721 793 -2521 373 248 40 101 chr6 167675360 167675558 -21603996 - MLT1K LTR MaLR -24 564 379 643 168 11 0 chr6 167675636 167675731 -21603823 + AluJ/FLAM SINE Alu 2 97 -215 350 203 91 132 chr6 167675784 167676026 -21603528 - MLT1K LTR MaLR -290 298 67 450 0 0 0 chr6 167676039 167676089 -21603465 + (CA)n Simple_repeat Simple_repeat 2 51 0 557 363 111 20 chr6 167676160 167677077 -21602477 + L2 LINE L2 872 1872 -1442 1759 96 0 4 chr6 167677128 167677367 -21602187 + L1PA10 LINE L1 5723 5960 -208 180 266 173 72 chr6 167677843 167677982 -21601572 - MIR SINE MIR -1 261 109 309 118 0 0 chr6 167677982 167678033 -21601521 + (GA)n Simple_repeat Simple_repeat 2 52 0 200 312 0 78 chr6 167678043 167678120 -21601434 - MIR3 SINE MIR -135 73 3 793 281 59 33 chr6 167678521 167678945 -21600609 + LTR16A LTR ERVL 16 450 0 1890 140 32 16 chr6 167679274 167679582 -21599972 - AluSq SINE Alu 0 313 1 417 289 41 60 chr6 167679584 167679850 -21599704 - LTR67 LTR ERVL -60 497 237 510 236 20 75 chr6 167680169 167680368 -21599186 + MER112 DNA MER1_type 66 253 -7 441 335 33 26 chr6 167681076 167681313 -21598241 - MIR SINE MIR -10 252 16 1524 207 42 34 chr6 167681631 167681984 -21597570 + MLT1A2 LTR MaLR 19 374 0 21 0 0 0 chr6 167682381 167682402 -21597152 + AT_rich Low_complexity Low_complexity 1 21 0 426 328 102 8 chr6 167683118 167683353 -21596201 + MIR SINE MIR 6 262 0 603 244 182 46 chr6 167683526 167683916 -21595638 + MLT1H LTR MaLR 107 549 0 195 129 0 0 chr6 167684163 167684194 -21595360 + (GAAA)n Simple_repeat Simple_repeat 1 31 0 6194 153 40 3 chr6 167684728 167685808 -21593746 - L1MC1 LINE L1 0 6333 5214 21 36 0 0 chr6 167685862 167685890 -21593664 + AT_rich Low_complexity Low_complexity 1 28 0 247 320 160 19 chr6 167686116 167686272 -21593282 + L2 LINE L2 3095 3272 0 531 292 88 26 chr6 167686415 167686641 -21592913 + MIR SINE MIR 23 262 0 216 0 0 0 chr6 167687660 167687684 -21591870 + (TA)n Simple_repeat Simple_repeat 2 25 0 535 39 26 13 chr6 167687726 167687804 -21591750 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 1317 78 0 52 chr6 167687859 167688038 -21591516 - AluSq SINE Alu -12 301 131 2547 67 0 6 chr6 167688038 167688351 -21591203 - AluYa5 SINE Alu 0 311 1 1317 78 0 52 chr6 167688351 167688362 -21591192 - AluSq SINE Alu -182 131 121 300 154 0 0 chr6 167688563 167688615 -21590939 + (CA)n Simple_repeat Simple_repeat 2 53 0 775 296 44 0 chr6 167688764 167688990 -21590564 - LTR16B LTR ERVL -216 248 13 438 108 0 0 chr6 167689134 167689199 -21590355 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 2345 104 0 0 chr6 167689199 167689507 -21590047 - AluSg SINE Alu -2 308 1 609 199 192 0 chr6 167689569 167689720 -21589834 - MER58A DNA MER1_type 0 224 45 787 295 42 8 chr6 167690363 167690600 -21588954 + MIR SINE MIR 11 255 -7 371 177 9 0 chr6 167690924 167690996 -21588558 - L1MB1 LINE L1 -614 5686 5610 2162 168 21 26 chr6 167690996 167691453 -21588101 + L1MB1 LINE L1 5676 6167 -1 453 231 30 77 chr6 167691667 167691965 -21587589 - L1M4 LINE L1 -2900 3246 2963 1724 170 0 67 chr6 167692081 167692411 -21587143 - AluJb SINE Alu -4 308 1 4292 176 46 12 chr6 167692435 167693516 -21586038 - L1MB8 LINE L1 -13 6165 5042 582 117 27 9 chr6 167693521 167693632 -21585922 + CT-rich Low_complexity Low_complexity 4 116 0 1184 206 20 20 chr6 167693649 167693669 -21585885 - L1MB8 LINE L1 -1087 5059 5040 679 219 16 16 chr6 167693669 167693792 -21585762 - FLAM_A SINE Alu -9 124 2 1184 206 20 20 chr6 167693792 167694072 -21585482 - L1MB8 LINE L1 -1105 5041 4759 443 241 147 42 chr6 167694155 167694221 -21585333 - HAL1 LINE L1 -862 1645 1587 2592 151 57 5 chr6 167694221 167694626 -21584928 + MSTB LTR MaLR 1 426 0 443 241 147 42 chr6 167694626 167694961 -21584593 - HAL1 LINE L1 -920 1587 1202 2242 103 0 0 chr6 167695097 167695389 -21584165 + AluSx SINE Alu 5 296 -16 201 261 26 113 chr6 167695441 167695556 -21583998 + MIR SINE MIR 49 153 -55 15694 189 65 6 chr6 167695779 167702278 -21577276 - L1PB1 LINE L1 0 6867 10 2680 42 0 3 chr6 167702335 167702642 -21576912 + AluY SINE Alu 1 306 -5 1847 163 10 13 chr6 167702718 167703025 -21576529 - AluJb SINE Alu -1 311 6 1171 14 0 7 chr6 167703356 167703494 -21576060 - AluYa5/8 SINE Alu -4 307 171 256 122 0 0 chr6 167703532 167703573 -21575981 + L1MA4 LINE L1 6253 6293 -7 213 287 46 46 chr6 167703708 167703795 -21575759 + MIR3 SINE MIR 9 95 -113 475 155 33 55 chr6 167703964 167704145 -21575409 + CT-rich Low_complexity Low_complexity 4 180 0 1149 151 0 0 chr6 167704154 167704320 -21575234 - AluSg/x SINE Alu -13 299 134 2325 114 3 0 chr6 167704320 167704627 -21574927 - AluSq SINE Alu -5 308 1 333 208 0 0 chr6 167704632 167704709 -21574845 + CT-rich Low_complexity Low_complexity 3 79 0 180 0 0 0 chr6 167704969 167704989 -21574565 + (A)n Simple_repeat Simple_repeat 1 20 0 2622 154 29 0 chr6 167705255 167705665 -21573889 - MSTB LTR MaLR 0 426 5 2774 100 33 19 chr6 167705869 167706299 -21573255 + L1MA8 LINE L1 5851 6286 -5 737 227 36 0 chr6 167706683 167706877 -21572677 - L1MD3 LINE L1 -8 7987 7787 2078 127 33 0 chr6 167706878 167707177 -21572377 - AluSx SINE Alu -3 309 1 439 267 63 16 chr6 167707215 167707406 -21572148 - L1ME4a LINE L1 -153 5968 5769 476 321 87 6 chr6 167708313 167708659 -21570895 + L1M4 LINE L1 2131 2504 -3642 353 299 43 39 chr6 167708636 167708870 -21570684 + L1M4 LINE L1 4144 4378 -1768 * 320 240 156 0 chr6 167709081 167709177 -21570377 - L1ME4a LINE L1 -517 5604 5494 339 198 0 37 chr6 167710847 167710928 -21568626 - MER116 DNA Mariner -2 78 1 22 0 0 0 chr6 167711005 167711027 -21568527 + AT_rich Low_complexity Low_complexity 1 22 0 213 315 0 0 chr6 167711202 167711256 -21568298 + L2 LINE L2 3209 3262 -10 228 67 0 44 chr6 167711676 167711721 -21567833 - L1PA8 LINE L1 0 6172 6130 541 269 65 16 chr6 167711764 167711950 -21567604 - MIR SINE MIR -21 241 47 2264 106 3 0 chr6 167712071 167712374 -21567180 - AluSq SINE Alu -9 304 1 461 281 169 6 chr6 167713395 167713573 -21565981 + MIR SINE MIR 2 208 -54 732 213 11 40 chr6 167713907 167714081 -21565473 - MER5B DNA MER1_type 0 178 10 411 359 6 45 chr6 167714376 167714532 -21565022 + MER91A DNA MER1_type 25 174 -22 1699 142 62 53 chr6 167714696 167715033 -21564521 + THE1C LTR MaLR 1 340 -35 369 302 145 6 chr6 167715429 167715601 -21563953 - MIR SINE MIR -65 197 2 206 240 20 20 chr6 167716141 167716191 -21563363 + MIR SINE MIR 81 130 -78 226 369 82 16 chr6 167716681 167716803 -21562751 - L2 LINE L2 -24 3248 3119 195 42 0 0 chr6 167718665 167718689 -21560865 + (TTTTC)n Simple_repeat Simple_repeat 1 24 0 462 65 0 0 chr6 167719743 167719805 -21559749 + (TCC)n Simple_repeat Simple_repeat 1 62 0 201 249 31 30 chr6 167719973 167720052 -21559502 + GA-rich Low_complexity Low_complexity 1 79 0 319 276 32 49 chr6 167720341 167720464 -21559090 + L2 LINE L2 3143 3263 -9 372 290 47 9 chr6 167720476 167720583 -21558971 + MIR3 SINE MIR 93 203 -5 1445 170 61 96 chr6 167721114 167721339 -21558215 - MLT1A1 LTR MaLR 0 365 157 2463 62 0 16 chr6 167721339 167721644 -21557910 - AluY SINE Alu -11 300 1 1445 170 61 96 chr6 167721644 167721794 -21557760 - MLT1A1 LTR MaLR -208 157 3 239 316 132 0 chr6 167721882 167722018 -21557536 - L2 LINE L2 -230 3042 2889 378 0 0 0 chr6 167722209 167722251 -21557303 + (GA)n Simple_repeat Simple_repeat 1 42 0 647 284 74 4 chr6 167722594 167722823 -21556731 + MIR SINE MIR 16 260 -2 616 307 158 25 chr6 167723142 167723585 -21555969 + L2 LINE L2 2812 3313 0 1127 136 12 0 chr6 167723656 167723818 -21555736 - AluSg/x SINE Alu -21 291 128 2271 100 10 6 chr6 167723818 167724129 -21555425 - AluSq SINE Alu -1 312 1 3104 154 4 12 chr6 167724233 167724752 -21554802 + L1MA7 LINE L1 5634 6148 -143 30 0 0 24 chr6 167724752 167724771 -21554783 + AT_rich Low_complexity Low_complexity 1 19 -21 2121 116 14 0 chr6 167724771 167725055 -21554499 + AluSx SINE Alu 1 288 -24 30 0 0 24 chr6 167725055 167725076 -21554478 + AT_rich Low_complexity Low_complexity 19 40 0 845 112 0 0 chr6 167725076 167725192 -21554362 - FLAM_C SINE Alu -25 118 3 971 120 7 0 chr6 167725203 167725345 -21554209 + L1MA7 LINE L1 6144 6286 -5 1229 105 0 23 chr6 167725353 167725387 -21554167 - AluSx SINE Alu -145 167 134 2260 116 0 0 chr6 167725387 167725698 -21553856 - AluSx SINE Alu -1 311 1 1229 105 0 23 chr6 167725698 167725834 -21553720 - AluSx SINE Alu -178 134 1 2378 64 13 7 chr6 167725889 167726187 -21553367 - AluY SINE Alu -11 300 1 1503 194 4 0 chr6 167726662 167726920 -21552634 + AluJo SINE Alu 1 259 -53 6347 56 4 4 chr6 167727072 167727825 -21551729 - L1PA8 LINE L1 0 6172 5420 214 383 9 9 chr6 167728297 167728404 -21551150 - L2 LINE L2 0 3272 3166 207 162 0 0 chr6 167728527 167728564 -21550990 + CT-rich Low_complexity Low_complexity 1 37 0 599 198 0 10 chr6 167730093 167730194 -21549360 - FLAM_A SINE Alu -25 117 18 201 269 45 0 chr6 167730355 167730422 -21549132 + MIR SINE MIR 91 160 -102 439 221 105 76 chr6 167731187 167731252 -21548302 - MER5B DNA MER1_type -1 177 115 2254 117 0 0 chr6 167731252 167731550 -21548004 + AluSx SINE Alu 1 298 -14 439 221 105 76 chr6 167731550 167731656 -21547898 - MER5B DNA MER1_type -63 115 1 2187 118 0 3 chr6 167731749 167732046 -21547508 - AluSc SINE Alu -13 296 1 1720 139 0 19 chr6 167732412 167732678 -21546876 - AluSx SINE Alu -13 299 39 438 303 65 54 chr6 167732696 167733092 -21546462 + L2 LINE L2 2766 3164 -149 1506 178 53 54 chr6 167733092 167733253 -21546301 - MLT1A2 LTR MaLR -2 591 431 2245 110 19 7 chr6 167733253 167733561 -21545993 - AluSx SINE Alu 0 312 1 1506 178 53 54 chr6 167733561 167733771 -21545783 - MLT1A2 LTR MaLR -162 431 1 691 195 0 8 chr6 167733789 167733912 -21545642 + L2 LINE L2 3187 3308 -5 1942 136 3 44 chr6 167736757 167737073 -21542481 - AluSx SINE Alu -9 303 1 262 333 52 7 chr6 167737533 167737668 -21541886 - L2 LINE L2 -661 2653 2513 2997 3 0 0 chr6 167738176 167738494 -21541060 - AluYb8 SINE Alu 0 318 1 868 187 68 89 chr6 167738972 167739207 -21540347 - AluJo SINE Alu -18 294 65 2335 59 0 11 chr6 167739465 167739751 -21539803 + AluY SINE Alu 1 283 -28 405 0 0 0 chr6 167739751 167739796 -21539758 + (CCAA)n Simple_repeat Simple_repeat 2 46 0 414 274 144 0 chr6 167741418 167741564 -21537990 + MIR SINE MIR 18 184 -78 1302 134 114 137 chr6 167741591 167741942 -21537612 - MER2 DNA MER2_type 0 344 2 24 0 0 0 chr6 167742910 167742934 -21536620 + AT_rich Low_complexity Low_complexity 1 24 0 456 289 46 20 chr6 167746052 167746204 -21533350 + MIR SINE MIR 41 196 -66 244 125 229 0 chr6 167746274 167746322 -21533232 + L2 LINE L2 3213 3271 -1 2181 114 0 0 chr6 167746688 167746977 -21532577 - AluSx SINE Alu -21 291 3 638 301 73 23 chr6 167747103 167747322 -21532232 - MIR SINE MIR -21 241 12 325 198 28 94 chr6 167747420 167747526 -21532028 + MIR SINE MIR 108 206 -56 2120 129 3 0 chr6 167747567 167747870 -21531684 + AluSx SINE Alu 1 304 -8 1990 138 0 3 chr6 167749250 167749586 -21529968 + AluSx SINE Alu 1 335 0 180 311 40 0 chr6 167749609 167749683 -21529871 + L2 LINE L2 3231 3307 -6 187 195 24 0 chr6 167750447 167750488 -21529066 + MIR SINE MIR 111 152 -110 22 0 0 0 chr6 167750686 167750708 -21528846 + AT_rich Low_complexity Low_complexity 1 22 0 225 278 74 46 chr6 167750727 167750835 -21528719 + MIR3 SINE MIR 93 203 -5 1985 109 8 0 chr6 167750878 167751145 -21528409 + AluSx SINE Alu 1 269 -43 1961 133 0 24 chr6 167751155 167751448 -21528106 + AluJo SINE Alu 11 296 -16 201 74 0 0 chr6 167753725 167753752 -21525802 + (T)n Simple_repeat Simple_repeat 1 27 0 1965 123 3 14 chr6 167754327 167754620 -21524934 + AluSq SINE Alu 23 312 -1 25 31 0 0 chr6 167755766 167755798 -21523756 + AT_rich Low_complexity Low_complexity 1 32 0 2201 80 0 61 chr6 167757290 167757616 -21521938 - AluSx SINE Alu -6 306 1 388 354 44 6 chr6 167757771 167757929 -21521625 - MIR SINE MIR -52 210 47 267 277 71 7 chr6 167760261 167760402 -21519152 - L1ME4a LINE L1 -22 6099 5950 191 114 29 0 chr6 167760521 167760556 -21518998 + (TA)n Simple_repeat Simple_repeat 1 36 0 408 345 67 21 chr6 167761250 167761867 -21517687 - L1MC4a LINE L1 -1909 5899 5255 4580 125 37 32 chr6 167761951 167762799 -21516755 - L1MA8 LINE L1 -60 6231 5380 21 57 0 0 chr6 167762885 167762920 -21516634 + AT_rich Low_complexity Low_complexity 1 35 0 336 301 57 62 chr6 167762977 167763170 -21516384 - L1MC4a LINE L1 -1088 5058 4867 293 136 45 15 chr6 167763535 167763601 -21515953 + MER116 DNA Mariner 1 68 -12 29623 98 12 25 chr6 167763635 167764286 -21515268 - L1PA7 LINE L1 -1 6468 5810 2517 71 0 0 chr6 167764286 167764582 -21514972 - AluY SINE Alu -15 296 1 29623 98 12 25 chr6 167764582 167770375 -21509179 - L1PA7 LINE L1 -659 5810 8 316 291 33 20 chr6 167770669 167770820 -21508734 + L1ME4a LINE L1 5964 6116 -5 183 80 0 0 chr6 167771121 167771146 -21508408 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 733 257 70 113 chr6 167772132 167772646 -21506908 - L2 LINE L2 -3 3310 2819 452 310 37 37 chr6 167773212 167773399 -21506155 - MIR SINE MIR -4 258 72 471 217 46 20 chr6 167773537 167773689 -21505865 - MER103 DNA DNA -10 156 1 374 361 47 81 chr6 167773986 167774371 -21505183 - L2 LINE L2 -29 3243 2872 188 281 78 16 chr6 167774896 167774960 -21504594 - L2 LINE L2 0 3313 3246 212 261 46 31 chr6 167775336 167775401 -21504153 - L2 LINE L2 -533 2781 2716 833 129 43 37 chr6 167776194 167776357 -21503197 + L1PB4 LINE L1 5901 6064 -92 312 311 93 26 chr6 167776397 167776548 -21503006 - HAL1 LINE L1 -1832 675 515 338 68 0 149 chr6 167776604 167776648 -21502906 + L1PB4 LINE L1 6085 6115 -41 2281 105 0 3 chr6 167776648 167776954 -21502600 + AluSx SINE Alu 1 305 -7 338 68 0 149 chr6 167776954 167776983 -21502571 + L1PB4 LINE L1 6115 6147 -9 239 302 121 27 chr6 167776995 167777293 -21502261 + HAL1 LINE L1 66 391 -2116 368 264 88 42 chr6 167777317 167777510 -21502044 + HAL1 LINE L1 510 711 -1796 288 102 0 0 chr6 167777620 167777669 -21501885 + (CA)n Simple_repeat Simple_repeat 1 49 0 363 178 0 14 chr6 167779165 167779238 -21500316 - LTR67 LTR ERVL 0 557 486 1170 247 26 73 chr6 167779238 167779393 -21500161 - L1M4 LINE L1 -1615 4531 4370 2436 62 0 16 chr6 167779393 167779697 -21499857 - AluY SINE Alu -12 299 1 1170 247 26 73 chr6 167779697 167780260 -21499294 - L1M4 LINE L1 -1776 4370 3851 2268 125 0 0 chr6 167780260 167780563 -21498991 - AluSx SINE Alu -9 303 1 1170 247 26 73 chr6 167780563 167780637 -21498917 - L1M4 LINE L1 -2295 3851 3775 1889 163 19 32 chr6 167780692 167781061 -21498493 + THE1B LTR MaLR 1 364 0 416 271 169 27 chr6 167781150 167781375 -21498179 + MIR SINE MIR 6 262 0 494 252 8 0 chr6 167781594 167781725 -21497829 - L1MA10 LINE L1 -2 6332 6201 1953 204 0 8 chr6 167782099 167782467 -21497087 + MLT1A1 LTR MaLR 1 365 0 758 261 41 5 chr6 167782641 167782851 -21496703 - MIR SINE MIR -11 251 31 877 147 0 0 chr6 167782871 167783000 -21496554 + FLAM_C SINE Alu 5 133 0 2044 125 10 10 chr6 167784135 167784438 -21495116 + AluSx SINE Alu 1 303 -9 327 65 0 0 chr6 167785574 167785620 -21493934 + (TG)n Simple_repeat Simple_repeat 1 46 0 834 286 42 25 chr6 167786123 167786364 -21493190 - MIR SINE MIR -13 249 5 210 235 0 0 chr6 167786522 167786573 -21492981 + (CAT)n Simple_repeat Simple_repeat 2 52 0 381 252 302 6 chr6 167786606 167786765 -21492789 - MIR SINE MIR -53 209 4 2078 116 10 0 chr6 167787685 167787978 -21491576 - AluSx SINE Alu -11 301 6 881 76 0 0 chr6 167788631 167788750 -21490804 - L1PB3 LINE L1 0 6154 6036 1917 154 22 22 chr6 167788809 167789179 -21490375 + THE1C LTR MaLR 1 370 -5 1942 125 7 26 chr6 167789437 167789740 -21489814 - AluSx SINE Alu -15 297 1 575 264 82 50 chr6 167789740 167789956 -21489598 - MIR SINE MIR -37 225 3 323 309 119 19 chr6 167790190 167790568 -21488986 - L1ME LINE L1 -297 5824 5409 333 243 36 36 chr6 167790803 167790943 -21488611 - L1MC4a LINE L1 -1884 5924 5785 1728 129 0 21 chr6 167791353 167791639 -21487915 - L1M3 LINE L1 -444 5727 5448 445 266 57 25 chr6 167792217 167792375 -21487179 + MIR SINE MIR 93 255 -7 215 311 16 0 chr6 167792981 167793042 -21486512 - L2 LINE L2 -2 3311 3250 2047 119 0 64 chr6 167793169 167793497 -21486057 - AluSx SINE Alu -5 307 1 290 224 15 15 chr6 167794241 167794308 -21485246 + CT-rich Low_complexity Low_complexity 1 67 0 410 97 14 0 chr6 167794637 167794709 -21484845 - L1MA9 LINE L1 0 6312 6240 3196 195 68 13 chr6 167794740 167795505 -21484049 - L1MA9 LINE L1 -38 6274 5468 477 273 50 16 chr6 167795554 167795752 -21483802 + MIR SINE MIR 6 261 -1 324 250 52 21 chr6 167795804 167795900 -21483654 + L2 LINE L2 3215 3313 0 278 328 15 38 chr6 167796043 167796174 -21483380 - MER5A DNA MER1_type -26 163 36 3668 197 56 3 chr6 167796822 167798013 -21481541 - L1MB7 LINE L1 -20 6164 4912 261 363 53 33 chr6 167798037 167798340 -21481214 + L2 LINE L2 2593 2901 -413 22 0 0 0 chr6 167798780 167798802 -21480752 + AT_rich Low_complexity Low_complexity 1 22 0 2496 141 92 37 chr6 167798802 167799348 -21480206 - L1MB2 LINE L1 -2 6169 5594 572 241 141 25 chr6 167799828 167800027 -21479527 + MIR SINE MIR 7 228 -34 2368 178 56 8 chr6 167800624 167801230 -21478324 - L1MB7 LINE L1 -12 6172 5443 281 274 86 21 chr6 167801408 167801594 -21477960 - L1MC4a LINE L1 -1906 5902 5705 364 285 23 39 chr6 167801662 167801792 -21477762 - L1MC4a LINE L1 -2248 5560 5433 300 364 68 15 chr6 167801985 167802117 -21477437 - L2 LINE L2 0 3272 3134 1718 164 3 3 chr6 167802339 167802644 -21476910 - L1MA6 LINE L1 0 6300 5996 2175 124 7 0 chr6 167806381 167806679 -21472875 - AluSx SINE Alu -12 300 1 1583 255 117 83 chr6 167807602 167807991 -21471563 + L2 LINE L2 1913 2288 -1026 1971 158 7 0 chr6 167807991 167808289 -21471265 + AluJb SINE Alu 1 300 -12 1583 255 117 83 chr6 167808289 167808683 -21470871 + L2 LINE L2 2288 2728 -586 2173 129 10 0 chr6 167808683 167808992 -21470562 - AluSx SINE Alu 0 312 1 1583 255 117 83 chr6 167808992 167809047 -21470507 + L2 LINE L2 2728 2780 -534 672 312 139 16 chr6 167809083 167809295 -21470259 + L2 LINE L2 2889 3074 -239 1808 121 59 11 chr6 167809295 167809567 -21469987 - AluSg SINE Alu -1 309 25 672 312 139 16 chr6 167809567 167809729 -21469825 + L2 LINE L2 3074 3309 -4 2446 80 0 6 chr6 167809769 167810081 -21469473 + AluSx SINE Alu 1 310 -2 415 283 44 56 chr6 167811458 167811540 -21468014 - MIR3 SINE MIR 0 208 127 2284 95 13 7 chr6 167811540 167811845 -21467709 + AluSx SINE Alu 1 307 -5 415 283 44 56 chr6 167811845 167811942 -21467612 - MIR3 SINE MIR -81 127 31 2294 93 17 0 chr6 167812056 167812356 -21467198 + AluSc SINE Alu 1 305 -4 1186 8 0 0 chr6 167812453 167812585 -21466969 + L1PA3 LINE L1 6019 6150 -5 391 40 0 0 chr6 167812926 167812976 -21466578 - MADE1 DNA Mariner 0 80 31 581 234 138 16 chr6 167814560 167814748 -21464806 + MIR SINE MIR 52 262 0 224 349 105 0 chr6 167814760 167814846 -21464708 + MIR3 SINE MIR 62 156 -52 913 224 17 0 chr6 167814850 167815029 -21464525 - MER5A DNA MER1_type 0 189 8 522 248 179 0 chr6 167815054 167815199 -21464355 + MER5B DNA MER1_type 3 173 -5 548 243 44 40 chr6 167815528 167815704 -21463850 + MIR SINE MIR 40 216 -46 67 64 0 7 chr6 167815725 167815743 -21463811 + AT_rich Low_complexity Low_complexity 1 18 -122 1831 149 85 0 chr6 167815743 167816024 -21463530 + AluSx SINE Alu 1 305 -7 67 64 0 7 chr6 167816024 167816146 -21463408 + AT_rich Low_complexity Low_complexity 18 140 0 627 130 26 35 chr6 167817168 167817283 -21462271 + MER81 DNA DNA 1 114 0 1531 192 23 8 chr6 167818021 167818406 -21461148 - Charlie5 DNA MER1_type 0 2624 2234 474 127 81 76 chr6 167818403 167818541 -21461013 - Charlie5 DNA MER1_type -2490 122 1 * 855 174 0 0 chr6 167819434 167819572 -21459982 + AluSg/x SINE Alu 173 310 0 258 232 61 10 chr6 167820311 167820410 -21459144 - MLT1J2 LTR MaLR -3 447 344 432 194 21 11 chr6 167820473 167820566 -21458988 - Charlie4 DNA MER1_type -7 1954 1861 * 613 243 109 36 chr6 167820565 167820812 -21458742 - Charlie4 DNA MER1_type -1664 297 33 380 325 49 45 chr6 167820828 167821071 -21458483 - MLT1J2 LTR MaLR -167 283 40 2854 192 103 24 chr6 167821090 167821882 -21457672 + L1MC4 LINE L1 7187 8041 -1 416 241 8 60 chr6 167822671 167822804 -21456750 - L2 LINE L2 -906 2408 2283 1300 117 0 0 chr6 167822933 167823104 -21456450 + AluSg/x SINE Alu 127 297 -15 23 33 0 0 chr6 167823455 167823485 -21456069 + AT_rich Low_complexity Low_complexity 1 30 0 23 78 0 0 chr6 167823536 167823587 -21455967 + AT_rich Low_complexity Low_complexity 1 51 0 405 265 64 93 chr6 167824595 167824908 -21454646 + L1ME4a LINE L1 5816 6119 -2 2421 167 21 32 chr6 167826030 167826502 -21453052 + MLT1C LTR MaLR 1 467 0 1412 136 35 0 chr6 167828276 167828504 -21451050 - MER46A DNA MER2_type 0 236 1 2468 49 7 13 chr6 167828527 167828833 -21450721 + AluY SINE Alu 1 304 -7 2336 102 0 3 chr6 167829617 167829931 -21449623 + AluSq SINE Alu 1 313 0 2063 122 0 3 chr6 167830163 167830480 -21449074 - AluSq SINE Alu 0 316 1 2077 129 0 0 chr6 167830739 167831056 -21448498 + AluSq SINE Alu 1 313 0 1187 165 78 8 chr6 167831209 167831464 -21448090 + L1MB4 LINE L1 5893 6165 -15 2189 122 0 0 chr6 167831469 167831764 -21447790 - AluSx SINE Alu -14 298 4 2907 73 7 0 chr6 167832002 167832424 -21447130 - L1PA7 LINE L1 -838 5308 4884 3114 87 5 0 chr6 167832424 167832863 -21446691 + L1PA7 LINE L1 5329 5769 -403 938 31 0 46 chr6 167832863 167832979 -21446575 + AluYa5/8 SINE Alu 187 298 -12 2553 55 0 148 chr6 167832979 167833431 -21446123 + L1PA7 LINE L1 5769 6153 -1 938 31 0 46 chr6 167833431 167833444 -21446110 + AluYa5/8 SINE Alu 298 310 0 568 216 58 18 chr6 167833507 167833678 -21445876 - MER5B DNA MER1_type 0 178 1 357 305 0 9 chr6 167834125 167834230 -21445324 - MIR3 SINE MIR -14 194 91 985 218 96 35 chr6 167834230 167834574 -21444980 - MLT1A1 LTR MaLR 0 365 1 269 304 0 43 chr6 167834574 167834643 -21444911 - MIR SINE MIR -113 95 30 275 268 132 52 chr6 167835477 167835690 -21443864 - L1ME LINE L1 -345 5776 5547 242 224 35 0 chr6 167836201 167836259 -21443295 + MER91 DNA MER1_type 45 104 -92 4176 147 59 9 chr6 167836635 167837447 -21442107 - L1MC3 LINE L1 -7 7778 6926 1465 198 9 47 chr6 167837903 167838242 -21441312 - MLT2C1 LTR ERVL -71 326 1 421 213 13 0 chr6 167838411 167838486 -21441068 - MER5A DNA MER1_type -111 78 3 267 292 0 14 chr6 167838761 167838833 -21440721 + MIR SINE MIR 85 155 -107 4251 174 2 17 chr6 167839794 167839873 -21439681 - L1P LINE L1 -1190 4956 4877 2126 125 3 0 chr6 167839873 167840170 -21439384 - AluSx SINE Alu -14 298 1 4251 174 2 17 chr6 167840170 167840979 -21438575 - L1P LINE L1 -1269 4877 4081 6574 82 10 0 chr6 167840979 167842183 -21437371 + L1PA13 LINE L1 4949 6161 -2 537 105 0 12 chr6 167842195 167842281 -21437273 + L1M2 LINE L1 5494 5578 -734 2812 91 0 0 chr6 167844240 167844604 -21434950 + THE1B LTR MaLR 1 364 0 312 162 0 44 chr6 167844961 167844979 -21434575 - L2 LINE L2 0 3272 3255 6754 136 41 18 chr6 167844979 167845482 -21434072 - Tigger3b DNA MER2_type -1797 1231 741 1841 176 3 25 chr6 167845482 167845800 -21433754 - AluJo SINE Alu -1 311 1 6754 136 41 18 chr6 167845800 167845952 -21433602 - Tigger3b DNA MER2_type -2287 741 594 2384 78 0 3 chr6 167845952 167846248 -21433306 + AluY SINE Alu 3 297 -14 6754 136 41 18 chr6 167846248 167846793 -21432761 - Tigger3b DNA MER2_type -2434 594 2 312 162 0 44 chr6 167846793 167846842 -21432712 - L2 LINE L2 -17 3255 3208 306 271 172 0 chr6 167848116 167848238 -21431316 - MIR SINE MIR -52 210 68 2175 122 0 3 chr6 167848266 167848570 -21430984 + AluSx SINE Alu 1 303 -9 620 226 13 62 chr6 167848766 167848929 -21430625 + L1MC4a LINE L1 5666 5818 -1990 2140 61 3 61 chr6 167848929 167849261 -21430293 + AluY SINE Alu 1 315 0 620 226 13 62 chr6 167849261 167849322 -21430232 + L1MC4a LINE L1 5818 5880 -1928 228 32 0 0 chr6 167849659 167849690 -21429864 - MADE1 DNA Mariner -15 65 35 369 66 66 0 chr6 167849693 167849754 -21429800 + MADE1 DNA Mariner 13 77 -3 395 304 48 54 chr6 167852219 167852387 -21427167 + MIR3 SINE MIR 5 171 -37 543 346 41 66 chr6 167852571 167853010 -21426544 - L2 LINE L2 -1 3271 2844 279 160 0 0 chr6 167853082 167853132 -21426422 + L2 LINE L2 3263 3312 -1 * 581 320 29 14 chr6 167853131 167853409 -21426145 - L2 LINE L2 -995 2319 2038 644 178 85 8 chr6 167853493 167853650 -21425904 + MLT1B LTR MaLR 21 191 -183 468 169 34 0 chr6 167853679 167853768 -21425786 + MLT1B LTR MaLR 283 374 0 270 0 0 0 chr6 167854113 167854143 -21425411 + (TG)n Simple_repeat Simple_repeat 2 31 0 889 229 10 15 chr6 167855022 167855223 -21424331 + L1ME2 LINE L1 5955 6154 -10 2266 103 0 10 chr6 167855768 167856069 -21423485 + AluSq SINE Alu 1 298 -15 256 320 74 44 chr6 167856162 167856418 -21423136 - L2 LINE L2 -10 3303 3010 221 245 20 0 chr6 167857413 167857462 -21422092 + CT-rich Low_complexity Low_complexity 3 52 0 228 211 141 0 chr6 167859584 167859655 -21419899 + L1MC4 LINE L1 6611 6691 -1351 190 194 0 0 chr6 167860094 167860130 -21419424 - MIR SINE MIR -65 143 108 28 48 0 0 chr6 167861429 167861471 -21418083 + GC_rich Low_complexity Low_complexity 1 42 0 218 32 32 0 chr6 167861472 167861503 -21418051 + (GGGA)n Simple_repeat Simple_repeat 2 33 0 21 36 0 0 chr6 167861558 167861586 -21417968 + GC_rich Low_complexity Low_complexity 1 28 0 1016 196 40 16 chr6 167863641 167863891 -21415663 - MER112 DNA MER1_type 0 256 1 242 175 18 18 chr6 167866417 167866474 -21413080 + (ATG)n Simple_repeat Simple_repeat 3 59 0 277 250 11 45 chr6 167868453 167868541 -21411013 + L2 LINE L2 3188 3272 0 3138 233 28 3 chr6 167868710 167869346 -21410208 - MER82 DNA MER2_type 0 653 2 543 264 130 5 chr6 167869348 167869556 -21409998 + MIR SINE MIR 4 237 -25 208 214 0 24 chr6 167869740 167869782 -21409772 - L2 LINE L2 -16 3297 3257 817 171 14 0 chr6 167869823 167869963 -21409591 + FLAM_C SINE Alu 1 142 -1 215 296 74 25 chr6 167870238 167870319 -21409235 - MER5B DNA MER1_type -29 149 65 282 181 12 24 chr6 167871855 167871938 -21407616 + (TA)n Simple_repeat Simple_repeat 1 82 0 3764 128 15 10 chr6 167872386 167872909 -21406645 + MER1A DNA MER1_type 1 526 -1 270 281 95 124 chr6 167872960 167873266 -21406288 - L2 LINE L2 0 3272 2976 640 308 40 24 chr6 167873423 167873676 -21405878 - MIR SINE MIR -2 260 4 573 278 30 18 chr6 167874037 167874206 -21405348 - MIR3 SINE MIR -2 206 36 965 136 118 0 chr6 167876078 167876247 -21403307 - MER53 DNA DNA 0 189 1 189 0 0 0 chr6 167876512 167876533 -21403021 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 8024 37 0 0 chr6 167876533 167877681 -21401873 - L1PA5 LINE L1 0 6154 5007 1593 107 0 5 chr6 167877787 167878002 -21401552 + AluSg/x SINE Alu 87 300 -10 2258 122 3 0 chr6 167878691 167879002 -21400552 + AluSx SINE Alu 1 312 0 426 222 0 0 chr6 167879794 167879875 -21399679 - L2 LINE L2 0 3313 3233 688 266 54 46 chr6 167879914 167880106 -21399448 - L2 LINE L2 -262 3051 2840 1692 121 42 106 chr6 167880106 167880436 -21399118 + AluJb SINE Alu 2 310 -2 688 266 54 46 chr6 167880436 167880580 -21398974 - L2 LINE L2 -473 2840 2699 258 211 56 28 chr6 167880583 167880654 -21398900 - L1MC5 LINE L1 -54 7907 7835 300 195 26 62 chr6 167880655 167880768 -21398786 - L1MC5 LINE L1 -215 7746 7638 259 224 119 0 chr6 167880787 167880854 -21398700 - L2 LINE L2 -780 2534 2460 199 174 14 116 chr6 167881022 167881091 -21398463 - MIR SINE MIR -111 151 90 236 264 0 0 chr6 167882399 167882452 -21397102 + CT-rich Low_complexity Low_complexity 2 54 0 375 310 44 7 chr6 167882758 167882954 -21396600 - MIR SINE MIR -1 207 3 1877 173 10 0 chr6 167884196 167884503 -21395051 - AluJo SINE Alu -2 310 1 635 262 62 57 chr6 167884647 167884857 -21394697 + MIR SINE MIR 20 230 -32 21 0 0 0 chr6 167885135 167885156 -21394398 + AT_rich Low_complexity Low_complexity 1 21 0 203 349 92 9 chr6 167885907 167886016 -21393538 - L2 LINE L2 -1 3271 3154 230 149 0 64 chr6 167886206 167886253 -21393301 - MLT2B1 LTR ERVL -370 44 1 233 378 34 17 chr6 167886652 167886771 -21392783 - L2 LINE L2 -14 3258 3138 6884 50 2 1 chr6 167886971 167887773 -21391781 + L1PA7 LINE L1 5352 6154 0 350 257 140 14 chr6 167887839 167888061 -21391493 - L2 LINE L2 -351 2963 2714 376 311 66 0 chr6 167888090 167888212 -21391342 - L2 LINE L2 -202 3070 2941 274 324 167 30 chr6 167888260 167888559 -21390995 - L2 LINE L2 -927 2387 2048 2473 121 28 6 chr6 167889283 167889639 -21389915 - THE1B LTR MaLR 0 364 1 254 286 42 34 chr6 167889667 167889786 -21389768 - L2 LINE L2 -77 3236 3117 1943 115 0 0 chr6 167890199 167890459 -21389095 - AluSg1 SINE Alu -49 260 1 33 0 0 0 chr6 167891039 167891072 -21388482 + AT_rich Low_complexity Low_complexity 1 33 0 981 163 0 0 chr6 167891072 167891225 -21388329 - FRAM SINE Alu -23 153 1 185 341 0 44 chr6 167892080 167892171 -21387383 - L2 LINE L2 0 3272 3186 3533 176 67 12 chr6 167892356 167893045 -21386509 + L1MB2 LINE L1 5445 6171 0 388 140 0 0 chr6 167893134 167893191 -21386363 - L2 LINE L2 -1 3271 3215 288 183 50 17 chr6 167893925 167893985 -21385569 - L2 LINE L2 -1 3312 3251 240 339 117 23 chr6 167894133 167894655 -21384899 + L2 LINE L2 1535 2105 -1209 1298 213 30 37 chr6 167894784 167895080 -21384474 - AluJo SINE Alu -18 294 1 215 253 24 0 chr6 167897156 167897239 -21382315 + (TA)n Simple_repeat Simple_repeat 1 85 0 831 228 124 15 chr6 167897532 167897734 -21381820 - MER58A DNA MER1_type 0 224 1 2198 111 0 0 chr6 167898355 167898644 -21380910 + AluSc SINE Alu 6 294 -15 360 359 74 43 chr6 167898906 167899257 -21380297 - L2 LINE L2 -1 3271 2910 3162 18 0 0 chr6 167900424 167900935 -21378619 - L1PA2 LINE L1 -624 5531 5020 5826 13 0 0 chr6 167900935 167901552 -21378002 + L1PA2 LINE L1 5537 6154 -1 472 267 144 102 chr6 167901770 167902359 -21377195 + L2 LINE L2 2626 3257 -56 2323 106 0 0 chr6 167902425 167902718 -21376836 + AluSg SINE Alu 1 293 -17 263 68 68 0 chr6 167903040 167903099 -21376455 + (TA)n Simple_repeat Simple_repeat 1 63 0 779 159 16 0 chr6 167903102 167903228 -21376326 + MLT1C LTR MaLR 1 128 -339 391 261 36 9 chr6 167903257 167903368 -21376186 + MLT1C LTR MaLR 123 236 -231 408 87 65 0 chr6 167903368 167903460 -21376094 + GA-rich Low_complexity Low_complexity 1 98 0 197 330 103 64 chr6 167903963 167904166 -21375388 + L2 LINE L2 2701 2911 -403 2302 104 0 0 chr6 167904504 167904802 -21374752 - AluSx SINE Alu -14 298 1 268 365 103 26 chr6 167904823 167905250 -21374304 - L2 LINE L2 -618 2696 2237 2436 88 7 0 chr6 167905869 167906219 -21373335 + AluSc SINE Alu 1 352 0 2069 134 0 0 chr6 167907893 167908191 -21371363 - AluSx SINE Alu -14 298 1 263 50 25 0 chr6 167908931 167908971 -21370583 + MADE1 DNA Mariner 40 80 0 1895 167 27 0 chr6 167910085 167910420 -21369134 - MER2 DNA MER2_type 0 344 1 318 80 0 0 chr6 167910439 167910489 -21369065 + (CA)n Simple_repeat Simple_repeat 2 51 0 2226 113 0 7 chr6 167910503 167910805 -21368749 - AluSx SINE Alu -10 302 3 386 207 86 0 chr6 167910839 167910955 -21368599 + L1ME4a LINE L1 5990 6115 -6 1502 138 35 11 chr6 167913123 167913406 -21366148 - L1MA9 LINE L1 -30 6282 5993 188 265 0 12 chr6 167913469 167913552 -21366002 + (TA)n Simple_repeat Simple_repeat 2 83 0 713 128 26 0 chr6 167913552 167913669 -21365885 + L1MA8 LINE L1 5781 5900 -391 423 360 180 5 chr6 167915037 167915259 -21364295 - MIR SINE MIR 0 262 2 416 283 22 7 chr6 167915295 167915433 -21364121 + ERVL LTR ERVL 4954 5093 -671 4850 30 22 2 chr6 167916039 167916663 -21362891 - L1PA5 LINE L1 -1397 4749 4113 7480 36 5 0 chr6 167916663 167918073 -21361481 + L1PA5 LINE L1 4764 6147 -7 444 258 0 8 chr6 167918196 167918324 -21361230 - L1MC4a LINE L1 -1898 5910 5784 240 352 16 24 chr6 167918637 167918762 -21360792 - MIR3 SINE MIR -7 201 78 4173 57 17 0 chr6 167919316 167919846 -21359708 - L1PA7 LINE L1 0 6154 5616 4023 74 39 41 chr6 167919846 167920393 -21359161 + L1P3 LINE L1 4742 5291 -863 282 29 0 0 chr6 167920393 167920428 -21359126 + (CA)n Simple_repeat Simple_repeat 2 36 0 4023 74 39 41 chr6 167920428 167920746 -21358808 + L1P3 LINE L1 5291 5608 -546 2740 148 15 45 chr6 167920932 167921078 -21358476 - L1PA16 LINE L1 -3 6163 6014 2341 110 0 0 chr6 167921078 167921388 -21358166 - AluSx SINE Alu -2 310 1 2740 148 15 45 chr6 167921388 167921768 -21357786 - L1PA16 LINE L1 -152 6014 5653 28 48 0 0 chr6 167923369 167923411 -21356143 + AT_rich Low_complexity Low_complexity 1 42 0 506 292 54 16 chr6 167923496 167923681 -21355873 + MIR SINE MIR 47 238 -24 1609 199 23 0 chr6 167923803 167924104 -21355450 - AluJo SINE Alu -4 308 1 399 47 0 31 chr6 167924133 167924197 -21355357 + L1PB3 LINE L1 6091 6152 -2 24 0 0 0 chr6 167924197 167924221 -21355333 + AT_rich Low_complexity Low_complexity 1 24 0 2874 159 38 25 chr6 167924221 167924357 -21355197 - L1MB3 LINE L1 -7 6987 6854 2378 94 0 3 chr6 167924357 167924664 -21354890 - AluSq SINE Alu -7 306 1 2874 159 38 25 chr6 167924664 167925075 -21354479 - L1MB3 LINE L1 -140 6854 6433 459 309 100 14 chr6 167926148 167926358 -21353196 + MIR SINE MIR 19 246 -16 338 283 89 44 chr6 167927202 167927382 -21352172 - L1ME3A LINE L1 -21 6149 5962 334 281 16 8 chr6 167927424 167927552 -21352002 - L1MC5 LINE L1 -480 7481 7353 1060 171 5 14 chr6 167927559 167927770 -21351784 - L1MB3 LINE L1 -544 6451 6243 737 144 0 25 chr6 167927783 167927901 -21351653 + FLAM_C SINE Alu 16 130 -13 3338 182 41 51 chr6 167927901 167927963 -21351591 - L1MB3 LINE L1 -738 6253 6192 2270 42 11 0 chr6 167927963 167928246 -21351308 - L1PA4 LINE L1 -3 6152 5867 3338 182 41 51 chr6 167928246 167928645 -21350909 - L1MB3 LINE L1 -799 6192 5791 334 20 0 40 chr6 167928645 167928695 -21350859 - L1PA4 LINE L1 -1 6154 6107 3338 182 41 51 chr6 167928695 167929277 -21350277 - L1MB3 LINE L1 -1200 5791 5232 348 229 0 0 chr6 167929281 167929364 -21350190 - L1MB3 LINE L1 -3693 3264 3182 477 236 6 22 chr6 167929649 167929831 -21349723 + CT-rich Low_complexity Low_complexity 2 180 0 1451 300 105 38 chr6 167929850 167930113 -21349441 - L1MB3 LINE L1 -5977 882 638 183 42 0 0 chr6 167930113 167930137 -21349417 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1451 300 105 38 chr6 167930137 167930690 -21348864 - L1MB3 LINE L1 -6221 638 11 661 216 14 95 chr6 167930717 167931013 -21348541 - L1MC5 LINE L1 -836 7125 6854 708 142 8 0 chr6 167931050 167931170 -21348384 - L1MA2 LINE L1 -16 6288 6168 718 283 13 13 chr6 167931170 167931403 -21348151 - L1MC5 LINE L1 -1105 6856 6624 302 219 14 0 chr6 167931695 167931768 -21347786 + L1MA10 LINE L1 6254 6327 -7 368 378 24 6 chr6 167931808 167931972 -21347582 - HAL1b LINE L1 -809 539 373 226 172 46 35 chr6 167932066 167932240 -21347314 + (TA)n Simple_repeat Simple_repeat 2 177 0 6872 70 0 2 chr6 167933509 167934797 -21344757 + L1PA7 LINE L1 4869 6154 0 538 268 73 0 chr6 167935062 167935226 -21344328 + MER5B DNA MER1_type 2 177 -1 260 229 9 46 chr6 167936201 167936310 -21343244 + L1ME4a LINE L1 5969 6073 -48 5144 182 51 35 chr6 167936407 167936725 -21342829 + L1MA10 LINE L1 4415 4727 -1607 407 68 0 0 chr6 167936725 167936777 -21342777 + L1PA16 LINE L1 6099 6157 -9 5144 182 51 35 chr6 167936777 167938331 -21341223 + L1MA10 LINE L1 4727 6318 -16 208 0 62 0 chr6 167939359 167939391 -21340163 + (TA)n Simple_repeat Simple_repeat 2 35 0 412 264 24 40 chr6 167942111 167942236 -21337318 - L2 LINE L2 0 3313 3191 24 32 0 0 chr6 167943518 167943549 -21336005 + AT_rich Low_complexity Low_complexity 1 31 0 341 278 84 96 chr6 167944428 167944762 -21334792 - L2 LINE L2 -36 3236 2907 454 257 149 17 chr6 167945341 167945516 -21334038 - MIR SINE MIR 0 262 65 208 190 3 0 chr6 167946402 167946445 -21333109 + MIR SINE MIR 110 154 -54 * 888 273 67 82 chr6 167946444 167946580 -21332974 + L2 LINE L2 2531 2667 -646 2010 145 14 0 chr6 167946580 167946876 -21332678 - AluSx SINE Alu -12 300 1 888 273 67 82 chr6 167946876 167947051 -21332503 + L2 LINE L2 2667 2843 -470 2576 62 0 0 chr6 167947051 167947358 -21332196 - AluY SINE Alu -4 307 1 888 273 67 82 chr6 167947358 167947669 -21331885 + L2 LINE L2 2843 3148 -165 2017 152 10 0 chr6 167947669 167947965 -21331589 - AluSx SINE Alu -13 299 1 253 310 196 59 chr6 167948485 167949011 -21330543 + L2 LINE L2 2310 2907 -407 219 349 32 8 chr6 167950644 167950770 -21328784 - MIR SINE MIR -13 249 121 515 326 58 18 chr6 167950862 167951086 -21328468 + MIR SINE MIR 30 262 0 382 308 41 27 chr6 167951434 167951580 -21327974 + MIR SINE MIR 1 148 -114 930 210 36 0 chr6 167951592 167951787 -21327767 + MER20 DNA MER1_type 1 202 -17 756 159 0 0 chr6 167951886 167952024 -21327530 + CT-rich Low_complexity Low_complexity 1 138 0 260 137 20 0 chr6 167952402 167952453 -21327101 + CT-rich Low_complexity Low_complexity 1 52 0 195 277 125 9 chr6 167952650 167952762 -21326792 + MIR3 SINE MIR 65 189 -19 225 0 0 0 chr6 167953005 167953030 -21326524 + (T)n Simple_repeat Simple_repeat 1 25 0 2035 103 4 0 chr6 167953095 167953366 -21326188 - AluSq SINE Alu -41 272 1 24 0 0 0 chr6 167953661 167953685 -21325869 + AT_rich Low_complexity Low_complexity 1 24 0 304 276 63 134 chr6 167953897 167954136 -21325418 + MIR SINE MIR 41 262 0 213 36 89 18 chr6 167954178 167954234 -21325320 + (TA)n Simple_repeat Simple_repeat 1 60 0 231 274 72 98 chr6 167954482 167954635 -21324919 - L2 LINE L2 0 3272 3124 746 215 164 39 chr6 167954909 167955165 -21324389 + LTR50 LTR ERVL 1 288 -507 719 253 125 7 chr6 167955207 167955496 -21324058 + LTR50 LTR ERVL 472 794 -1 480 331 0 0 chr6 167956676 167956821 -21322733 - MIR SINE MIR -55 207 63 191 226 0 57 chr6 167956891 167956944 -21322610 - L2 LINE L2 0 3272 3223 180 220 0 85 chr6 167957752 167957811 -21321743 - L3 LINE CR1 -457 1120 1067 2029 135 10 16 chr6 167958000 167958311 -21321243 + AluSx SINE Alu 1 309 -3 289 274 0 29 chr6 167959598 167959700 -21319854 - MLT1K LTR MaLR -42 546 448 388 301 48 27 chr6 167960038 167960184 -21319370 + MIR SINE MIR 48 196 -66 501 295 128 18 chr6 167960315 167960542 -21319012 - MIR SINE MIR -8 254 3 522 343 41 44 chr6 167961845 167962233 -21317321 - L3b LINE CR1 -83 1500 1114 456 379 6 6 chr6 167965595 167965777 -21313777 - MER5A DNA MER1_type -1 188 7 186 133 0 0 chr6 167966007 167966037 -21313517 + (TG)n Simple_repeat Simple_repeat 1 30 0 225 94 0 0 chr6 167966467 167966499 -21313055 + (A)n Simple_repeat Simple_repeat 1 32 0 212 0 0 35 chr6 167967668 167967697 -21311857 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2404 93 0 0 chr6 167967831 167968141 -21311413 - AluSg SINE Alu 0 310 1 211 220 0 0 chr6 167968519 167968569 -21310985 + T-rich Low_complexity Low_complexity 1 50 0 1611 138 4 0 chr6 167969303 167969592 -21309962 + AluSx SINE Alu 43 332 0 748 191 0 0 chr6 167970642 167970783 -21308771 - MLT1B LTR MaLR 0 390 250 1086 146 0 12 chr6 167970783 167970948 -21308606 - AluSc SINE Alu -16 293 131 459 309 100 14 chr6 167971778 167971988 -21307566 + MIR SINE MIR 19 246 -16 21 0 0 0 chr6 167972896 167972917 -21306637 + AT_rich Low_complexity Low_complexity 1 21 0 497 326 125 44 chr6 167974037 167974968 -21304586 - L2 LINE L2 -17 3255 2246 1209 21 0 0 chr6 167975699 167975841 -21303713 - L1PA2 LINE L1 0 6155 6014 1973 163 0 16 chr6 167976390 167976703 -21302851 - AluJo SINE Alu -4 308 1 977 351 34 13 chr6 167977480 167978096 -21301458 - L2 LINE L2 -981 2333 1705 455 366 0 0 chr6 167978205 167978396 -21301158 - MIR SINE MIR 0 262 72 2495 72 19 21 chr6 167978613 167978990 -21300564 - SVA Other Other -689 697 322 4462 155 46 8 chr6 167978991 167980838 -21298716 - L1PBa LINE L1 -4755 2108 3 596 340 91 0 chr6 167981418 167981650 -21297904 + MIR SINE MIR 5 257 -5 1120 43 7 0 chr6 167984799 167984937 -21294617 - MER85 DNA T2_type 0 139 1 688 284 119 27 chr6 167985516 167986266 -21293288 - L1M4 LINE L1 -872 5274 4456 25 0 0 0 chr6 167986335 167986360 -21293194 + AT_rich Low_complexity Low_complexity 1 25 0 334 234 62 23 chr6 167986422 167986550 -21293004 - L1ME4a LINE L1 -262 5859 5727 402 217 63 28 chr6 167986882 167987025 -21292529 + L1ME4a LINE L1 5974 6121 0 415 169 0 0 chr6 167988007 167988078 -21291476 + tRNA-Ile-ATT tRNA tRNA 4 74 -3 583 189 49 0 chr6 167988976 167989098 -21290456 + MER3 DNA MER1_type 4 131 -78 181 54 0 54 chr6 167989098 167989135 -21290419 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 233 208 0 0 chr6 167989136 167989184 -21290370 - MER3 DNA MER1_type -121 88 41 195 220 0 102 chr6 167989428 167989487 -21290067 + MIR SINE MIR 114 166 -96 296 228 35 69 chr6 167989657 167989705 -21289849 + Charlie7 DNA MER1_type 2473 2521 -91 1956 146 36 12 chr6 167989705 167990034 -21289520 - MER1B DNA MER1_type 0 337 1 296 228 35 69 chr6 167990034 167990130 -21289424 + Charlie7 DNA MER1_type 2521 2612 0 271 274 30 82 chr6 167990583 167990718 -21288836 + MER5B DNA MER1_type 59 175 -3 885 224 10 0 chr6 167990795 167990996 -21288558 - MER3 DNA MER1_type 0 209 7 2872 60 0 0 chr6 167991599 167991995 -21287559 + L1PA8 LINE L1 5807 6202 0 267 317 205 10 chr6 167993468 167993673 -21285881 + MIR SINE MIR 3 247 -15 1017 90 0 28 chr6 167993948 167994092 -21285462 + AluSc SINE Alu 169 308 -1 264 59 0 0 chr6 167994702 167994736 -21284818 + (TC)n Simple_repeat Simple_repeat 2 35 0 213 208 42 0 chr6 167995624 167995672 -21283882 - L2 LINE L2 -6 3307 3258 21 0 0 0 chr6 167996347 167996368 -21283186 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr6 167996790 167996840 -21282714 + AT_rich Low_complexity Low_complexity 1 50 0 332 307 132 26 chr6 167997970 167998084 -21281470 - L2 LINE L2 0 3272 3147 230 220 119 0 chr6 167998389 167998448 -21281106 - L2 LINE L2 -6 3307 3242 224 357 24 0 chr6 167998628 167998712 -21280842 - L2 LINE L2 -219 3053 2968 300 53 0 0 chr6 167998755 167998793 -21280761 + (TATATG)n Simple_repeat Simple_repeat 6 43 0 21 0 0 0 chr6 167999002 167999023 -21280531 + AT_rich Low_complexity Low_complexity 1 21 0 2965 158 48 3 chr6 167999206 167999787 -21279767 - L1MC3 LINE L1 -32 7753 7147 5145 100 4 6 chr6 167999789 168000522 -21279032 - L1PA10 LINE L1 0 6168 5437 1652 148 0 0 chr6 168000855 168001138 -21278416 + L1P LINE L1 4729 5011 -1135 7372 188 45 33 chr6 168001138 168002850 -21276704 - L1MC3 LINE L1 -629 7156 5421 2235 105 3 0 chr6 168002850 168003145 -21276409 - AluSg SINE Alu -14 296 1 7372 188 45 33 chr6 168003145 168003215 -21276339 - L1MC3 LINE L1 -2364 5421 5353 23 0 0 0 chr6 168003215 168003238 -21276316 + AT_rich Low_complexity Low_complexity 1 23 0 5552 226 28 43 chr6 168003238 168004129 -21275425 - L1PA14 LINE L1 -3 6158 5256 2239 108 0 0 chr6 168004129 168004415 -21275139 + AluSq SINE Alu 1 286 -27 258 32 0 0 chr6 168004415 168004446 -21275108 + (CATA)n Simple_repeat Simple_repeat 2 32 0 5552 226 28 43 chr6 168004446 168006519 -21273035 - L1PA14 LINE L1 -904 5257 3156 1962 146 7 19 chr6 168006519 168006828 -21272726 - AluSx SINE Alu -7 305 1 5552 226 28 43 chr6 168006828 168006956 -21272598 - L1PA14 LINE L1 -3005 3156 3028 2276 178 14 24 chr6 168006956 168007377 -21272177 - MER47B DNA MER2_type 0 418 2 5552 226 28 43 chr6 168007377 168008270 -21271284 - L1PA14 LINE L1 -3133 3028 2242 985 64 6 64 chr6 168008281 168008438 -21271116 + L1PA8 LINE L1 6022 6169 -3 322 97 258 0 chr6 168008456 168008518 -21271036 + AluSq SINE Alu 120 197 -106 1676 215 94 45 chr6 168008535 168008787 -21270767 - L1MCa LINE L1 -3898 2528 2290 2293 90 3 7 chr6 168008787 168009088 -21270466 - AluSp SINE Alu -13 300 1 1676 215 94 45 chr6 168009088 168009540 -21270014 - L1MCa LINE L1 -4136 2290 1785 723 99 10 0 chr6 168009646 168009747 -21269807 - AluS SINE Alu -211 102 1 1002 181 80 25 chr6 168009749 168009986 -21269568 - MLT1B LTR MaLR -130 260 11 1771 206 17 3 chr6 168009991 168010351 -21269203 - MLT1B LTR MaLR -16 374 10 271 224 17 0 chr6 168011185 168011243 -21268311 - MLT1A2 LTR MaLR -71 303 245 196 240 179 89 chr6 168011260 168011439 -21268115 + L2 LINE L2 3119 3313 0 181 380 94 29 chr6 168011441 168011612 -21267942 - L2 LINE L2 0 3272 3091 243 316 36 58 chr6 168011794 168011904 -21267650 + MIR SINE MIR 49 158 -104 2001 110 37 0 chr6 168011904 168012208 -21267346 + AluSx SINE Alu 3 316 0 243 316 36 58 chr6 168012208 168012235 -21267319 + MIR SINE MIR 158 184 -78 2179 134 0 0 chr6 168013078 168013376 -21266178 + AluSx SINE Alu 1 298 -14 27 81 0 0 chr6 168013619 168013681 -21265873 + AT_rich Low_complexity Low_complexity 1 62 0 180 333 0 0 chr6 168013944 168013989 -21265565 - MIR3 SINE MIR -48 160 116 13396 181 23 20 chr6 168014107 168016397 -21263157 - L1 LINE L1 -1098 6467 4057 2088 128 0 7 chr6 168016397 168016703 -21262851 - AluSx SINE Alu -8 304 1 13396 181 23 20 chr6 168016703 168017458 -21262096 - L1 LINE L1 -3508 4057 3306 254 274 230 15 chr6 168017847 168017982 -21261572 - MIR3 SINE MIR -21 187 24 32 0 0 0 chr6 168018245 168018277 -21261277 + AT_rich Low_complexity Low_complexity 1 32 0 223 313 36 0 chr6 168018426 168018509 -21261045 + MIR SINE MIR 57 142 -120 2138 85 3 14 chr6 168019223 168019516 -21260038 + AluY SINE Alu 1 290 -21 1139 146 0 0 chr6 168019516 168019681 -21259873 + AluSg/x SINE Alu 134 298 -14 49 0 0 0 chr6 168019776 168019825 -21259729 + AT_rich Low_complexity Low_complexity 1 49 0 525 211 74 16 chr6 168019877 168020067 -21259487 - MER33 DNA MER1_type -94 230 30 213 191 43 0 chr6 168020154 168020201 -21259353 - L2 LINE L2 -545 2769 2721 4676 176 11 9 chr6 168020283 168021610 -21257944 - L1P5 LINE L1 -566 5585 4256 6770 227 15 12 chr6 168021713 168023948 -21255606 - L1 LINE L1 -2477 3669 1435 3009 27 0 0 chr6 168023948 168024280 -21255274 - SVA Other Other -2 1384 1053 561 266 189 0 chr6 168074280 168074449 -21205105 - L2 LINE L2 -1331 1983 1783 1131 294 144 12 chr6 168074452 168075041 -21204513 - L2 LINE L2 -1691 1623 957 220 82 82 33 chr6 168075511 168075572 -21203982 + (CAAAC)n Simple_repeat Simple_repeat 1 64 0 345 155 113 52 chr6 168075619 168075716 -21203838 - HAL1 LINE L1 -1075 1432 1330 341 216 17 35 chr6 168075746 168075862 -21203692 - HAL1 LINE L1 -1359 1148 1035 21 36 0 0 chr6 168075862 168075890 -21203664 + AT_rich Low_complexity Low_complexity 1 28 0 354 282 53 113 chr6 168075923 168076189 -21203365 - HAL1 LINE L1 -1502 1005 756 273 311 71 34 chr6 168076198 168076436 -21203118 - HAL1 LINE L1 -1816 691 445 5139 184 17 5 chr6 168076439 168077579 -21201975 - L1 LINE L1 -805 5341 4189 2427 79 0 3 chr6 168077583 168077887 -21201667 - AluY SINE Alu -8 303 1 344 279 30 36 chr6 168077986 168078151 -21201403 - L1ME4a LINE L1 -89 6032 5869 283 286 67 28 chr6 168078624 168078802 -21200752 - HAL1b LINE L1 -416 932 748 368 307 62 22 chr6 168079069 168079437 -21200117 - HAL1 LINE L1 -880 1627 1245 6646 51 6 1 chr6 168080133 168081008 -21198546 - L1PA7 LINE L1 -2 6152 5274 3325 88 0 4 chr6 168081003 168081494 -21198060 + L1PA7 LINE L1 4779 5267 -879 * 29 0 0 0 chr6 168082186 168082215 -21197339 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr6 168082788 168082811 -21196743 + (TTG)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr6 168082857 168082881 -21196673 + AT_rich Low_complexity Low_complexity 1 24 0 2191 95 0 3 chr6 168084142 168084447 -21195107 - L1PB1 LINE L1 -1 6150 5847 4545 214 8 3 chr6 168084463 168085561 -21193993 + L1 LINE L1 2849 3952 -2194 2203 143 60 26 chr6 168085612 168086126 -21193428 - MLT2A2 LTR ERVL 0 554 1 456 215 62 23 chr6 168086137 168086267 -21193287 - MIR SINE MIR -65 197 63 634 188 273 0 chr6 168086879 168087055 -21192499 - MER58A DNA MER1_type 0 224 1 447 298 166 24 chr6 168087203 168087408 -21192146 - MIR SINE MIR -8 254 21 294 263 147 64 chr6 168087443 168087599 -21191955 + MIR SINE MIR 20 188 -74 1944 142 3 45 chr6 168088343 168088763 -21190791 - MLT2C2 LTR ERVL 0 397 3 206 178 22 0 chr6 168089799 168089844 -21189710 + (TA)n Simple_repeat Simple_repeat 1 46 0 317 258 40 8 chr6 168089925 168090049 -21189505 + L1MEd LINE L1 3 130 -5989 385 314 45 58 chr6 168090169 168090392 -21189162 + L1MEd LINE L1 319 538 -5581 2136 131 0 0 chr6 168090458 168090763 -21188791 + AluSx SINE Alu 1 305 -7 231 36 0 0 chr6 168090897 168090925 -21188629 + (A)n Simple_repeat Simple_repeat 1 28 0 608 277 56 44 chr6 168091126 168091755 -21187799 + L1MEd LINE L1 898 1629 -861 1070 161 5 10 chr6 168092022 168092221 -21187333 - MLT1B LTR MaLR -192 198 1 2246 122 0 0 chr6 168093651 168093947 -21185607 - AluSg SINE Alu -14 296 1 211 163 0 82 chr6 168095014 168095063 -21184491 - L2 LINE L2 -1 3312 3268 1455 151 27 73 chr6 168095335 168095434 -21184120 - Charlie5 DNA MER1_type 0 2624 2522 1766 74 0 0 chr6 168095434 168095649 -21183905 - AluY SINE Alu -16 295 81 1455 151 27 73 chr6 168095649 168095960 -21183594 - Charlie5 DNA MER1_type -102 2522 2233 526 198 26 0 chr6 168095964 168096080 -21183474 - Charlie5 DNA MER1_type -2493 119 1 238 324 104 35 chr6 168097829 168098002 -21181552 + MIR SINE MIR 20 204 -58 2403 107 0 7 chr6 168098169 168098479 -21181075 + AluSx SINE Alu 1 308 -4 2033 112 3 7 chr6 168098619 168098914 -21180640 - AluSx SINE Alu -18 294 1 437 179 123 62 chr6 168099113 168099275 -21180279 - MER96B DNA MER1_type? 0 417 246 237 211 0 0 chr6 168099834 168099891 -21179663 + (TG)n Simple_repeat Simple_repeat 1 57 0 1799 117 0 0 chr6 168100210 168100450 -21179104 - AluSx SINE Alu -18 294 55 306 158 53 0 chr6 168100597 168100654 -21178900 - AluJ/FLAM SINE Alu -241 61 2 3321 107 4 10 chr6 168100955 168101439 -21178115 - MER1A DNA MER1_type 0 529 49 1429 89 0 28 chr6 168101475 168101688 -21177866 + L1PA13 LINE L1 5952 6158 -5 237 220 0 0 chr6 168101721 168101771 -21177783 + (TATATG)n Simple_repeat Simple_repeat 1 50 0 26 93 0 0 chr6 168103017 168103092 -21176462 + AT_rich Low_complexity Low_complexity 1 75 0 519 265 110 16 chr6 168103348 168103593 -21175961 - MLT1J2 LTR MaLR -119 331 64 326 267 123 87 chr6 168104867 168105062 -21174492 + L2 LINE L2 2985 3186 -86 1612 176 41 0 chr6 168105094 168105413 -21174141 - L1MB3 LINE L1 -8 6175 5844 486 250 0 0 chr6 168106674 168106778 -21172776 - MIR SINE MIR -108 154 51 811 203 27 53 chr6 168106905 168107112 -21172442 - MIR SINE MIR -1 261 57 380 236 22 0 chr6 168107153 168107242 -21172312 + MIR3 SINE MIR 97 187 -21 188 259 37 62 chr6 168107365 168107446 -21172108 + L2 LINE L2 3230 3308 -5 522 174 0 0 chr6 168108232 168108341 -21171213 + (TCCA)n Simple_repeat Simple_repeat 1 109 0 767 289 20 24 chr6 168108728 168108977 -21170577 - MIR SINE MIR -2 260 13 243 0 22 67 chr6 168110016 168110061 -21169493 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 27 0 0 0 chr6 168110184 168110211 -21169343 + AT_rich Low_complexity Low_complexity 1 27 0 377 231 63 28 chr6 168112745 168112888 -21166666 + Charlie4 DNA MER1_type 1811 1958 -3 355 301 53 15 chr6 168113025 168113158 -21166396 - MIR SINE MIR -13 249 112 255 269 15 0 chr6 168113166 168113233 -21166321 - L2 LINE L2 -1 3312 3245 225 305 17 0 chr6 168113220 168113279 -21166275 - MIR SINE MIR -142 120 61 * 310 185 0 0 chr6 168113853 168113907 -21165647 + MLT1C LTR MaLR 413 466 -1 1129 204 156 58 chr6 168114095 168114511 -21165043 - MSTB2 LTR MaLR 0 457 1 333 0 0 0 chr6 168115131 168115168 -21164386 + (TG)n Simple_repeat Simple_repeat 1 37 0 288 0 0 0 chr6 168116286 168116318 -21163236 + (TG)n Simple_repeat Simple_repeat 1 32 0 315 278 159 13 chr6 168118535 168118686 -21160868 - MIR SINE MIR -6 256 84 1911 194 27 45 chr6 168122396 168122946 -21156608 + L1ME1 LINE L1 5368 5907 -259 421 261 51 7 chr6 168123664 168123802 -21155752 + MIR SINE MIR 105 248 -14 380 214 0 10 chr6 168123803 168123901 -21155653 + CT-rich Low_complexity Low_complexity 1 97 0 291 28 0 0 chr6 168124963 168124999 -21154555 + (CA)n Simple_repeat Simple_repeat 2 37 0 180 0 0 0 chr6 168124998 168125018 -21154536 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 241 265 44 0 chr6 168125149 168125217 -21154337 + MIR3 SINE MIR 119 189 -19 588 327 28 24 chr6 168125344 168125598 -21153956 - MIR SINE MIR 0 262 8 202 168 42 21 chr6 168126111 168126206 -21153348 + CT-rich Low_complexity Low_complexity 5 101 0 371 130 65 26 chr6 168126410 168126487 -21153067 - L1MA5A LINE L1 -3 6294 6215 888 165 0 146 chr6 168126773 168126846 -21152708 - MER20 DNA MER1_type 0 219 137 2167 122 45 11 chr6 168126846 168127198 -21152356 + THE1B LTR MaLR 1 364 0 888 165 0 146 chr6 168127198 168127378 -21152176 - MER20 DNA MER1_type -82 137 3 241 361 93 42 chr6 168127392 168127824 -21151730 + L2 LINE L2 2308 2761 -553 1381 113 51 0 chr6 168127826 168128021 -21151533 + AluSp SINE Alu 96 300 -13 2374 121 25 0 chr6 168128890 168129245 -21150309 + THE1B LTR MaLR 1 364 0 30 93 0 0 chr6 168129274 168129360 -21150194 + AT_rich Low_complexity Low_complexity 1 86 0 26 30 0 0 chr6 168129386 168129419 -21150135 + AT_rich Low_complexity Low_complexity 1 33 0 331 190 0 13 chr6 168132138 168132217 -21147337 + L1MB8 LINE L1 6098 6175 -3 264 234 90 83 chr6 168132833 168132978 -21146576 - L2 LINE L2 -10 3303 3158 2088 154 0 0 chr6 168133384 168133696 -21145858 - AluSx SINE Alu 0 312 1 3232 74 32 2 chr6 168133971 168134402 -21145152 + MLT2A1 LTR ERVL 1 444 0 2450 105 5 27 chr6 168134616 168134988 -21144566 + THE1B LTR MaLR 1 364 0 451 312 115 73 chr6 168135195 168135635 -21143919 - L2 LINE L2 -849 2465 1980 2429 94 0 16 chr6 168135635 168135953 -21143601 + AluSp SINE Alu 1 313 0 451 312 115 73 chr6 168135953 168136242 -21143312 - L2 LINE L2 -1334 1980 1705 247 252 65 0 chr6 168136251 168136358 -21143196 - L1MC4 LINE L1 -4 8038 7925 345 255 128 36 chr6 168136435 168136631 -21142923 - L1MC5 LINE L1 -227 7734 7521 317 185 25 0 chr6 168136711 168136792 -21142762 - L1MC5 LINE L1 -541 7420 7338 319 265 12 0 chr6 168136800 168136883 -21142671 + MER58A DNA MER1_type 1 84 -23 382 333 59 24 chr6 168136933 168137507 -21142047 - L1M4 LINE L1 -1088 5058 4465 566 172 27 0 chr6 168137595 168137825 -21141729 + (TA)n Simple_repeat Simple_repeat 1 236 0 258 238 16 0 chr6 168137836 168137899 -21141655 - L1P LINE L1 -1902 4244 4181 294 285 86 50 chr6 168138191 168139117 -21140437 - L1M4 LINE L1 -2509 3637 2678 369 356 66 9 chr6 168139158 168139475 -21140079 - L1M4 LINE L1 -3625 2521 2187 221 130 43 29 chr6 168139546 168139615 -21139939 + (TTTA)n Simple_repeat Simple_repeat 2 71 0 2216 109 7 0 chr6 168139906 168140210 -21139344 - AluSq SINE Alu -7 306 1 481 319 39 22 chr6 168140401 168140758 -21138796 - HAL1b LINE L1 -741 607 245 2319 92 0 3 chr6 168140807 168141102 -21138452 + AluY SINE Alu 1 294 -17 41511 48 2 1 chr6 168141104 168147265 -21132289 + L1PA5 LINE L1 1 6172 0 42 36 0 0 chr6 168148221 168148277 -21131277 + AT_rich Low_complexity Low_complexity 1 56 0 593 299 89 28 chr6 168148388 168149033 -21130521 + L1M4 LINE L1 4500 5191 -955 2226 88 30 0 chr6 168149033 168149328 -21130226 + AluY SINE Alu 1 304 -7 593 299 89 28 chr6 168149328 168149364 -21130190 + L1M4 LINE L1 5191 5223 -923 205 255 0 0 chr6 168150168 168150215 -21129339 + GA-rich Low_complexity Low_complexity 2 48 0 241 332 53 37 chr6 168150611 168150801 -21128753 - MIR SINE MIR -58 204 12 1739 193 43 33 chr6 168150840 168151384 -21128170 - MLT2A2 LTR ERVL 0 554 1 40189 86 7 10 chr6 168151384 168151582 -21127972 - HERVL-A2-A2 LTR ERVL 0 5654 5457 2021 107 7 7 chr6 168151582 168151862 -21127692 - AluSg1 SINE Alu -19 290 11 40189 86 7 10 chr6 168151862 168157334 -21122220 - HERVL-A2-A2 LTR ERVL -197 5457 1 2005 172 41 33 chr6 168157334 168157879 -21121675 - MLT2A2 LTR ERVL 0 554 2 374 266 108 25 chr6 168158406 168158648 -21120906 + MIR SINE MIR 4 262 0 364 328 8 30 chr6 168159144 168159278 -21120276 - MIR3 SINE MIR -48 160 30 203 311 172 33 chr6 168160082 168160262 -21119292 + L2 LINE L2 3107 3311 -2 387 208 10 31 chr6 168160606 168160702 -21118852 + L1PB4 LINE L1 6063 6156 0 243 0 0 0 chr6 168160902 168160929 -21118625 + (T)n Simple_repeat Simple_repeat 1 27 0 484 286 52 97 chr6 168160952 168161034 -21118520 + L2 LINE L2 2950 3034 -279 2115 92 30 10 chr6 168161034 168161329 -21118225 + AluSc SINE Alu 1 301 -8 484 286 52 97 chr6 168161329 168161627 -21117927 + L2 LINE L2 3034 3313 0 245 89 22 0 chr6 168164302 168164347 -21115207 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 21 36 0 0 chr6 168164762 168164790 -21114764 + AT_rich Low_complexity Low_complexity 1 28 0 228 299 47 47 chr6 168164790 168164893 -21114661 + L2 LINE L2 3139 3244 -28 2186 175 75 8 chr6 168164893 168165292 -21114262 - MSTB LTR MaLR 0 426 1 228 299 47 47 chr6 168165292 168165315 -21114239 + L2 LINE L2 3243 3265 -7 871 210 9 90 chr6 168165333 168165566 -21113988 + MER58A DNA MER1_type 1 214 -10 183 100 0 0 chr6 168166136 168166166 -21113388 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 663 207 0 0 chr6 168166351 168166619 -21112935 + CT-rich Low_complexity Low_complexity 1 268 0 541 307 87 4 chr6 168166708 168167030 -21112524 + L1MC4a LINE L1 5536 5819 -302 2161 171 8 15 chr6 168167910 168168303 -21111251 - L1MA8 LINE L1 -417 5874 5485 488 260 0 0 chr6 168168937 168169033 -21110521 - MIR SINE MIR -138 124 29 348 83 0 0 chr6 168170626 168170674 -21108880 + (CA)n Simple_repeat Simple_repeat 2 49 0 215 231 0 0 chr6 168171448 168171500 -21108054 - MIR SINE MIR -25 237 186 252 323 97 16 chr6 168171627 168171751 -21107803 + L2 LINE L2 3138 3271 -1 424 261 60 129 chr6 168172002 168172048 -21107506 + L1MC4a LINE L1 4952 5000 -1146 530 183 10 0 chr6 168172048 168172152 -21107402 + L1MB8 LINE L1 6074 6178 0 424 261 60 129 chr6 168172152 168172554 -21107000 + L1MC4a LINE L1 5000 5369 -777 555 273 117 21 chr6 168172578 168172904 -21106650 + L1MC4a LINE L1 5554 5910 -1898 26 30 0 0 chr6 168173888 168173921 -21105633 + AT_rich Low_complexity Low_complexity 1 33 0 311 0 26 0 chr6 168174680 168174719 -21104835 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 193 370 105 31 chr6 168177274 168177436 -21102118 + L2 LINE L2 2926 3099 -173 220 172 86 69 chr6 168177483 168177541 -21102013 - L2 LINE L2 0 3313 3255 303 287 87 87 chr6 168179705 168179935 -21099619 + MIR SINE MIR 23 252 -10 1889 120 0 22 chr6 168180525 168180801 -21098753 + AluSq SINE Alu 37 306 -7 367 329 7 28 chr6 168181382 168181525 -21098029 - MER5B DNA MER1_type -38 140 1 1199 270 60 28 chr6 168181989 168182426 -21097128 - LTR26 LTR ERV1 -2 601 151 2099 163 0 51 chr6 168182457 168182812 -21096742 - MER1B DNA MER1_type 0 337 1 272 278 0 0 chr6 168183913 168183967 -21095587 - L2 LINE L2 -18 3254 3201 190 231 39 0 chr6 168183985 168184037 -21095517 + MIR SINE MIR 129 182 -80 654 246 141 5 chr6 168184333 168184524 -21095030 + MIR SINE MIR 8 224 -38 667 268 47 57 chr6 168184634 168184951 -21094603 - L1ME4a LINE L1 -286 5835 5522 411 194 52 60 chr6 168186308 168186442 -21093112 - L1ME4a LINE L1 -11 6110 5978 183 380 139 22 chr6 168186502 168186639 -21092915 - L3b LINE CR1 -57 1526 1374 305 235 0 71 chr6 168186651 168186736 -21092818 + MIR SINE MIR 24 102 -106 27 29 0 0 chr6 168186857 168186891 -21092663 + AT_rich Low_complexity Low_complexity 1 34 0 6589 146 36 8 chr6 168186891 168188037 -21091517 - L1MC1 LINE L1 0 6333 5162 195 267 0 33 chr6 168188260 168188320 -21091234 + MIR3 SINE MIR 151 208 0 2530 104 6 30 chr6 168189036 168189400 -21090154 + THE1A LTR MaLR 1 355 0 12120 100 11 8 chr6 168189400 168190974 -21088580 + THE1A-int LTR MaLR 1 1580 0 1442 131 17 13 chr6 168190974 168191211 -21088343 + THE1A LTR MaLR 1 238 -117 5517 93 17 12 chr6 168191450 168197380 -21082174 + L1PA6 LINE L1 11 6154 0 1014 91 8 0 chr6 168197397 168197529 -21082025 + THE1A LTR MaLR 223 355 0 999 155 0 0 chr6 168198100 168198248 -21081306 + FRAM SINE Alu 1 146 -30 261 0 0 0 chr6 168198258 168198287 -21081267 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1283 299 50 30 chr6 168198379 168198874 -21080680 - MLT1G1 LTR MaLR -90 505 1 85 42 0 0 chr6 168199300 168199420 -21080134 + AT_rich Low_complexity Low_complexity 1 120 0 537 287 39 52 chr6 168200375 168200605 -21078949 - MLT1J1 LTR MaLR -23 423 197 386 319 37 7 chr6 168200781 168200916 -21078638 - MER5B DNA MER1_type -37 141 3 561 247 78 5 chr6 168200979 168201198 -21078356 - MER20B DNA MER1_type -56 727 493 2762 142 24 0 chr6 168201362 168201777 -21077777 + MSTC LTR MaLR 4 428 0 2169 114 3 0 chr6 168202534 168202823 -21076731 - AluSx SINE Alu -22 290 1 406 277 59 8 chr6 168202852 168202971 -21076583 - MER20B DNA MER1_type -572 211 87 210 343 0 10 chr6 168203629 168203728 -21075826 + GA-rich Low_complexity Low_complexity 1 98 0 200 250 54 18 chr6 168204476 168204532 -21075022 + L2 LINE L2 3214 3271 -1 361 216 40 0 chr6 168205805 168205879 -21073675 - MLT1K LTR MaLR -10 578 502 2162 118 3 0 chr6 168205946 168206243 -21073311 + AluSg1 SINE Alu 5 302 -7 339 25 0 0 chr6 168206276 168206316 -21073238 + (TC)n Simple_repeat Simple_repeat 1 40 0 240 314 48 19 chr6 168206359 168206464 -21073090 - MLT1K LTR MaLR -206 382 275 294 288 83 8 chr6 168206852 168206984 -21072570 + MIR SINE MIR 34 175 -87 600 335 48 0 chr6 168207965 168208195 -21071359 + L2 LINE L2 2549 2789 -525 236 291 23 87 chr6 168208317 168208489 -21071065 - MLT1K LTR MaLR -164 385 225 308 363 146 9 chr6 168208641 168208853 -21070701 + L2 LINE L2 3017 3257 -15 216 259 37 0 chr6 168209259 168209313 -21070241 + L3 LINE CR1 1518 1573 -4 226 239 0 0 chr6 168209480 168209526 -21070028 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 291 54 0 0 chr6 168210071 168210108 -21069446 + (TC)n Simple_repeat Simple_repeat 2 38 0 240 35 0 0 chr6 168210109 168210138 -21069416 + (CA)n Simple_repeat Simple_repeat 2 30 0 484 296 142 33 chr6 168210817 168211281 -21068273 - L2 LINE L2 -123 3190 2680 22 35 0 0 chr6 168213968 168213997 -21065557 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr6 168214302 168214337 -21065217 + AT_rich Low_complexity Low_complexity 1 35 0 417 335 29 12 chr6 168216381 168216551 -21063003 + MIR SINE MIR 20 192 -70 192 125 0 0 chr6 168216640 168216672 -21062882 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 324 317 48 62 chr6 168216882 168217090 -21062464 + MIR SINE MIR 25 229 -33 517 266 47 18 chr6 168217223 168217392 -21062162 + MIR SINE MIR 89 262 0 255 278 63 0 chr6 168217416 168217542 -21062012 - L1M4c LINE L1 -4126 3012 2879 354 211 78 22 chr6 168217554 168217644 -21061910 + MER21B LTR ERV1 12 106 -757 * 3346 195 41 34 chr6 168217642 168218298 -21061256 + MER21B LTR ERV1 19 679 -184 2550 259 60 52 chr6 168218329 168218372 -21061182 - L1M4c LINE L1 -4247 2891 2850 2366 100 0 0 chr6 168218372 168218671 -21060883 - AluSx SINE Alu -13 299 1 2550 259 60 52 chr6 168218671 168218721 -21060833 - L1M4c LINE L1 -4288 2850 2802 2873 6 0 19 chr6 168218721 168219038 -21060516 - AluYb8 SINE Alu -7 311 1 2550 259 60 52 chr6 168219038 168219526 -21060028 - L1M4c LINE L1 -4336 2802 2319 1710 156 0 57 chr6 168219526 168219851 -21059703 - AluJo SINE Alu 0 308 1 2550 259 60 52 chr6 168219851 168220803 -21058751 - L1M4c LINE L1 -4819 2319 1182 250 271 33 146 chr6 168220889 168221129 -21058425 - L1M4c LINE L1 -5704 1151 939 376 298 56 37 chr6 168221244 168221459 -21058095 - L1M4c LINE L1 -6601 258 40 2739 106 24 19 chr6 168221796 168222222 -21057332 - MSTA LTR MaLR 0 428 1 2029 119 3 64 chr6 168222329 168222656 -21056898 + AluSp SINE Alu 1 307 -6 225 342 33 49 chr6 168222701 168222885 -21056669 + L3 LINE CR1 1344 1524 -53 411 223 83 8 chr6 168222975 168223096 -21056458 - MIR SINE MIR -76 186 57 2948 105 2 0 chr6 168223224 168223632 -21055922 + L1PA13 LINE L1 5744 6152 -11 287 140 20 0 chr6 168226079 168226129 -21053425 - MER58 DNA MER1_type -4 2416 2366 207 0 0 0 chr6 168226131 168226154 -21053400 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 363 137 45 0 chr6 168226159 168226231 -21053323 - MER58 DNA MER1_type -105 110 36 375 214 12 0 chr6 168226436 168226520 -21053034 + L1MB1 LINE L1 6060 6144 -24 225 0 0 0 chr6 168226520 168226545 -21053009 + (TG)n Simple_repeat Simple_repeat 2 26 0 709 223 29 6 chr6 168226730 168226905 -21052649 - MIR SINE MIR -61 201 23 2847 13 0 0 chr6 168227555 168227862 -21051692 + AluYa5 SINE Alu 1 307 -4 271 297 27 9 chr6 168228320 168228431 -21051123 + L1ME LINE L1 4898 5010 -1136 484 226 124 7 chr6 168228819 168228956 -21050598 - MER5B DNA MER1_type -6 172 20 457 293 8 68 chr6 168229020 168229276 -21050278 + L1ME LINE L1 5501 5741 -421 236 228 9 44 chr6 168229639 168229753 -21049801 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 205 206 14 110 chr6 168230002 168230075 -21049479 - MER5A DNA MER1_type -120 69 4 3306 58 13 34 chr6 168231290 168231738 -21047816 + L1PA8 LINE L1 5733 6171 -1 185 255 0 21 chr6 168231795 168231842 -21047712 + L2 LINE L2 3254 3299 -14 189 316 26 13 chr6 168233622 168233698 -21045856 + MER5B DNA MER1_type 28 104 -74 309 242 82 94 chr6 168233839 168234083 -21045471 - MER102b DNA MER1_type 0 341 101 206 320 0 31 chr6 168234222 168234319 -21045235 - L2 LINE L2 -565 2749 2656 1892 103 66 11 chr6 168236987 168237259 -21042295 + AluSx SINE Alu 1 287 -25 193 239 43 0 chr6 168237404 168237450 -21042104 + MIR SINE MIR 85 132 -76 217 299 26 13 chr6 168237743 168237820 -21041734 - MIR3 SINE MIR -12 196 119 543 273 57 16 chr6 168237844 168238038 -21041516 - MIR SINE MIR -34 228 27 216 307 51 36 chr6 168238006 168238143 -21041411 - MIR3 SINE MIR -54 154 16 * 273 250 0 0 chr6 168238374 168238434 -21041120 + MIR SINE MIR 79 138 -124 303 246 55 9 chr6 168238822 168238932 -21040622 - MIR3 SINE MIR -1 207 93 22 0 0 0 chr6 168239020 168239042 -21040512 + AT_rich Low_complexity Low_complexity 1 22 0 364 269 112 8 chr6 168240221 168240355 -21039199 + MIR SINE MIR 103 250 -12 24 0 0 0 chr6 168245774 168245798 -21033756 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr6 168245811 168245834 -21033720 + AT_rich Low_complexity Low_complexity 1 23 0 2144 117 0 37 chr6 168247332 168247656 -21031898 + AluSx SINE Alu 1 312 0 327 104 0 0 chr6 168248548 168248596 -21030958 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 199 333 42 0 chr6 168248596 168248692 -21030862 - L2 LINE L2 -13 3259 3160 417 319 51 25 chr6 168248735 168248970 -21030584 + L2 LINE L2 2734 2974 -340 191 343 27 14 chr6 168249121 168249194 -21030360 + L2 LINE L2 3239 3312 -1 234 222 33 44 chr6 168249931 168250021 -21029533 + L1ME LINE L1 5817 5905 -259 2190 122 0 0 chr6 168251174 168251516 -21028038 + AluSx SINE Alu 1 312 0 2199 117 7 0 chr6 168252234 168252532 -21027022 + AluSx SINE Alu 1 300 -12 653 77 28 49 chr6 168252564 168252707 -21026847 + (GAAA)n Simple_repeat Simple_repeat 1 140 0 652 162 36 0 chr6 168253498 168253609 -21025945 + FLAM_A SINE Alu 1 115 -18 25 0 0 0 chr6 168253609 168253634 -21025920 + AT_rich Low_complexity Low_complexity 1 25 0 2433 68 0 7 chr6 168253697 168254004 -21025550 + AluY SINE Alu 1 305 -6 1792 182 13 7 chr6 168254420 168254722 -21024832 + AluJb SINE Alu 1 304 -8 1691 153 7 27 chr6 168254734 168255034 -21024520 + AluJo SINE Alu 1 294 -18 22 35 0 0 chr6 168255325 168255354 -21024200 + AT_rich Low_complexity Low_complexity 1 29 0 234 0 0 0 chr6 168257427 168257453 -21022101 + (TG)n Simple_repeat Simple_repeat 2 27 0 2485 88 0 0 chr6 168258692 168258999 -21020555 + AluSx SINE Alu 5 311 -1 626 271 83 26 chr6 168259013 168259199 -21020355 - MIR SINE MIR -20 242 39 848 201 141 11 chr6 168259199 168259482 -21020072 - MER33 DNA MER1_type 0 324 5 626 271 83 26 chr6 168259482 168259524 -21020030 - MIR SINE MIR -223 39 1 182 318 170 18 chr6 168259769 168259992 -21019562 + L2 LINE L2 2151 2407 -907 182 279 197 16 chr6 168260690 168260812 -21018742 + L2 LINE L2 3169 3312 -1 576 267 20 20 chr6 168261475 168261621 -21017933 + MIR SINE MIR 31 176 -86 243 289 13 0 chr6 168261671 168261747 -21017807 + MIR SINE MIR 117 193 -69 808 272 8 34 chr6 168262121 168262356 -21017198 - MIR SINE MIR -30 232 4 191 343 88 0 chr6 168263165 168263302 -21016252 + L3 LINE CR1 1287 1435 -142 315 297 45 0 chr6 168263564 168263675 -21015879 - L3b LINE CR1 -130 1453 1338 2094 126 0 32 chr6 168263875 168264185 -21015369 + AluSx SINE Alu 1 300 -12 254 180 16 0 chr6 168265325 168265386 -21014168 + (CA)n Simple_repeat Simple_repeat 2 63 0 360 0 0 0 chr6 168267391 168267431 -21012123 + (CA)n Simple_repeat Simple_repeat 2 41 0 25 0 0 0 chr6 168268525 168268550 -21011004 + AT_rich Low_complexity Low_complexity 1 25 0 1742 176 27 6 chr6 168269387 168269717 -21009837 + MER2 DNA MER2_type 4 340 -5 2142 130 3 0 chr6 168269779 168270072 -21009482 - AluSx SINE Alu -18 294 1 3209 119 35 4 chr6 168270128 168270649 -21008905 + L1MA4A LINE L1 5751 6287 -16 522 107 0 0 chr6 168270703 168270778 -21008776 - Alu SINE Alu -11 301 227 378 0 0 0 chr6 168321059 168321101 -20958453 + (A)n Simple_repeat Simple_repeat 1 42 0 878 247 44 22 chr6 168321352 168321579 -20957975 + MIR SINE MIR 31 262 0 22 35 0 0 chr6 168321686 168321715 -20957839 + AT_rich Low_complexity Low_complexity 1 29 0 1886 138 3 11 chr6 168322598 168322928 -20956626 - AluSp SINE Alu 0 330 3 2680 29 0 10 chr6 168323128 168323442 -20956112 - AluYa5 SINE Alu 0 311 1 1696 190 0 10 chr6 168323443 168323748 -20955806 - AluJo SINE Alu -8 304 3 252 86 0 0 chr6 168323811 168323846 -20955708 + (T)n Simple_repeat Simple_repeat 1 35 0 192 143 0 0 chr6 168323923 168323965 -20955589 + (A)n Simple_repeat Simple_repeat 1 42 0 2058 137 3 7 chr6 168324113 168324419 -20955135 + AluJb SINE Alu 1 305 -7 511 191 0 45 chr6 168324536 168324646 -20954908 - ORSL DNA AcHobo -2 273 169 25 31 0 0 chr6 168324877 168324909 -20954645 + AT_rich Low_complexity Low_complexity 1 32 0 2259 114 7 3 chr6 168325363 168325669 -20953885 + AluSx SINE Alu 1 307 -5 230 180 0 0 chr6 168325932 168325982 -20953572 + L2 LINE L2 3179 3228 -85 632 227 0 8 chr6 168326625 168326753 -20952801 + L2 LINE L2 3187 3313 0 2484 110 16 11 chr6 168326807 168327180 -20952374 + THE1C LTR MaLR 1 375 0 234 128 0 0 chr6 168327232 168327271 -20952283 + (GGAGA)n Simple_repeat Simple_repeat 2 40 0 1567 269 89 24 chr6 168327942 168328833 -20950721 + L1MEc LINE L1 1573 2521 -3875 291 283 41 7 chr6 168328849 168328994 -20950560 + L1MEc LINE L1 3352 3501 -2714 2161 124 10 0 chr6 168328998 168329304 -20950250 + AluSg SINE Alu 1 309 -1 1297 287 112 31 chr6 168329337 168329982 -20949572 + HERVL LTR ERVL 596 1292 -3704 4781 245 36 57 chr6 168330142 168330780 -20948774 + HERVL LTR ERVL 1592 2242 -2754 2223 96 3 0 chr6 168330780 168331071 -20948483 + AluSq SINE Alu 1 292 -21 4781 245 36 57 chr6 168331071 168331203 -20948351 + HERVL LTR ERVL 2242 2375 -2621 1737 157 34 14 chr6 168331203 168331496 -20948058 + AluJo SINE Alu 5 303 -9 4781 245 36 57 chr6 168331496 168332262 -20947292 + HERVL LTR ERVL 2375 3096 -1900 466 291 11 6 chr6 168332350 168332525 -20947029 + HERVL LTR ERVL 5175 5350 -304 630 307 17 4 chr6 168332717 168332958 -20946596 + LTR16A LTR ERVL 158 401 -49 1434 140 5 9 chr6 168333435 168333656 -20945898 + AluJb SINE Alu 86 305 -7 606 220 63 82 chr6 168333770 168334038 -20945516 - ORSL DNA AcHobo 0 275 13 213 140 40 20 chr6 168334142 168334192 -20945362 + (TTTAA)n Simple_repeat Simple_repeat 5 55 0 1421 103 70 0 chr6 168334251 168334465 -20945089 - MER30 DNA MER1_type -1 229 1 720 250 24 18 chr6 168335966 168336134 -20943420 + MER5B DNA MER1_type 1 169 -9 486 270 61 10 chr6 168336267 168336463 -20943091 - Charlie8 DNA MER1_type -2137 280 75 45 79 0 0 chr6 168336536 168336637 -20942917 + AT_rich Low_complexity Low_complexity 1 101 0 266 116 0 0 chr6 168336704 168336747 -20942807 + MADE1 DNA Mariner 1 43 -37 209 324 117 18 chr6 168336880 168336991 -20942563 - L2 LINE L2 0 3272 3151 24 0 0 0 chr6 168337117 168337141 -20942413 + AT_rich Low_complexity Low_complexity 1 24 0 2353 66 0 3 chr6 168337466 168337753 -20941801 - AluSg SINE Alu -24 286 1 688 148 19 26 chr6 168337753 168337900 -20941654 + L1MA8 LINE L1 6133 6280 -11 180 0 0 0 chr6 168337900 168337920 -20941634 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 208 281 172 0 chr6 168337985 168338049 -20941505 - L2 LINE L2 0 3313 3239 1550 127 5 0 chr6 168338877 168339089 -20940465 + AluSx SINE Alu 1 213 -99 334 199 62 85 chr6 168339169 168339345 -20940209 + MER53 DNA DNA 18 189 0 191 244 13 0 chr6 168340339 168340417 -20939137 + (TA)n Simple_repeat Simple_repeat 2 80 0 30 27 0 0 chr6 168342227 168342264 -20937290 + AT_rich Low_complexity Low_complexity 1 37 0 2527 61 0 0 chr6 168342403 168342700 -20936854 + AluY SINE Alu 11 307 -4 853 195 30 61 chr6 168342708 168342939 -20936615 + AluJb SINE Alu 85 308 -4 239 203 6 6 chr6 168343357 168343440 -20936114 + L1MB8 LINE L1 5742 5809 -361 311 236 89 41 chr6 168343501 168343645 -20935909 - MIR3 SINE MIR -65 143 14 2136 133 39 30 chr6 168343910 168344271 -20935283 + THE1B LTR MaLR 1 364 0 321 266 0 0 chr6 168344287 168344366 -20935188 - MIR SINE MIR -88 174 96 224 354 142 32 chr6 168344496 168344807 -20934747 - L2 LINE L2 -26 3246 2902 731 246 28 6 chr6 168344868 168345047 -20934507 + MER58A DNA MER1_type 42 224 0 181 273 0 0 chr6 168345060 168345093 -20934461 + L2 LINE L2 3258 3290 -23 1126 214 7 55 chr6 168345164 168345472 -20934082 + L1MB8 LINE L1 5877 6169 -9 801 184 0 101 chr6 168345919 168346147 -20933407 + MER3 DNA MER1_type 5 209 0 374 324 76 18 chr6 168347766 168347991 -20931563 + MIR SINE MIR 21 258 -4 2084 113 11 0 chr6 168348024 168348334 -20931220 + AluSx SINE Alu 1 313 0 360 274 60 17 chr6 168348664 168348781 -20930773 - L2 LINE L2 0 3313 3192 21 0 0 0 chr6 168349124 168349145 -20930409 + AT_rich Low_complexity Low_complexity 1 21 0 23 86 0 0 chr6 168349932 168349990 -20929564 + AT_rich Low_complexity Low_complexity 1 58 0 538 332 0 43 chr6 168351753 168351964 -20927590 - L2 LINE L2 -8 3305 3104 2255 114 3 3 chr6 168352020 168352326 -20927228 - AluSx SINE Alu -6 306 1 195 170 0 0 chr6 168352582 168352629 -20926925 + A-rich Low_complexity Low_complexity 1 47 0 2492 74 3 3 chr6 168352786 168353095 -20926459 - AluSc SINE Alu 0 309 1 24 53 0 0 chr6 168353100 168353138 -20926416 + AT_rich Low_complexity Low_complexity 1 38 0 293 191 29 0 chr6 168353562 168353630 -20925924 - MER103 DNA DNA -21 145 76 347 223 11 34 chr6 168353688 168353863 -20925691 + GA-rich Low_complexity Low_complexity 3 173 0 202 229 0 0 chr6 168354008 168354056 -20925498 + T-rich Low_complexity Low_complexity 1 48 0 582 186 21 14 chr6 168354059 168354204 -20925350 - L1MB7 LINE L1 -8 6176 6031 425 136 0 0 chr6 168354209 168354268 -20925286 + AluS SINE Alu 1 59 -251 1908 135 0 0 chr6 168354268 168354527 -20925027 + AluSx SINE Alu 27 285 -27 3321 161 107 8 chr6 168354537 168355259 -20924295 - L1MB8 LINE L1 -130 6048 5256 1811 116 83 0 chr6 168356447 168356724 -20922830 + AluSg SINE Alu 1 300 -10 193 162 81 0 chr6 168356881 168356918 -20922636 - MIR SINE MIR -98 164 125 215 108 15 200 chr6 168357147 168357212 -20922342 - L2 LINE L2 -4 3309 3257 2230 116 3 6 chr6 168357266 168357577 -20921977 + AluSq SINE Alu 1 310 -3 426 20 0 0 chr6 168357740 168357791 -20921763 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2349 103 3 0 chr6 168359387 168359699 -20919855 + AluSp SINE Alu 1 313 0 2248 92 0 0 chr6 168360855 168361136 -20918418 - AluSq SINE Alu -30 283 3 297 204 151 0 chr6 168361298 168361391 -20918163 - L2 LINE L2 -4 3309 3203 2533 78 0 0 chr6 168361789 168362097 -20917457 + AluY SINE Alu 1 308 -3 315 0 0 0 chr6 168362097 168362132 -20917422 + (TA)n Simple_repeat Simple_repeat 1 35 0 4559 117 14 80 chr6 168362650 168363547 -20916007 - Tigger1 DNA MER2_type -1 2417 1580 1706 141 116 3 chr6 168363570 168363925 -20915629 - L1MA2 LINE L1 0 6304 5910 * 7454 183 29 8 chr6 168363922 168365534 -20914020 - L1 LINE L1 -2028 5537 3893 23 33 0 0 chr6 168365569 168365599 -20913955 + AT_rich Low_complexity Low_complexity 1 30 0 1404 156 0 9 chr6 168365599 168365810 -20913744 - AluSg/x SINE Alu -27 285 77 20303 142 40 16 chr6 168365811 168366497 -20913057 - L1 LINE L1 -3647 3918 3250 1584 163 0 0 chr6 168366497 168366730 -20912824 - AluSx SINE Alu -79 233 1 20303 142 40 16 chr6 168366730 168366842 -20912712 - L1 LINE L1 -4315 3250 3142 2291 88 7 7 chr6 168366842 168367139 -20912415 + AluY SINE Alu 1 297 -14 20303 142 40 16 chr6 168367139 168368025 -20911529 - L1 LINE L1 -4423 3142 2278 2250 127 0 0 chr6 168368025 168368333 -20911221 - AluSx SINE Alu -4 308 1 20303 142 40 16 chr6 168368333 168370467 -20909087 - L1 LINE L1 -5287 2278 16 3430 142 25 10 chr6 168370475 168371079 -20908475 - Tigger1 DNA MER2_type -826 1592 980 249 91 0 0 chr6 168371079 168371112 -20908442 + Alu SINE Alu 249 281 -22 338 235 10 0 chr6 168371112 168371214 -20908340 + GA-rich Low_complexity Low_complexity 4 106 0 5233 144 23 34 chr6 168371215 168372185 -20907369 - Tigger1 DNA MER2_type -1457 961 3 227 303 15 0 chr6 168373344 168373410 -20906144 + MIR SINE MIR 86 152 -110 1698 162 35 0 chr6 168373523 168373807 -20905747 - AluJo SINE Alu -18 294 1 2374 105 3 6 chr6 168375177 168375491 -20904063 + AluSq SINE Alu 1 313 0 280 338 73 4 chr6 168375571 168375768 -20903786 + MIR SINE MIR 40 252 -10 2062 138 0 6 chr6 168377197 168377508 -20902046 + AluSx SINE Alu 4 312 0 21 0 0 0 chr6 168378196 168378217 -20901337 + AT_rich Low_complexity Low_complexity 1 21 0 565 247 18 18 chr6 168378434 168378604 -20900950 - MIR SINE MIR -1 261 92 267 316 128 60 chr6 168379564 168380236 -20899318 - L2 LINE L2 -2 3270 2556 311 369 78 8 chr6 168381798 168382066 -20897488 - L3b LINE CR1 -119 1464 1178 22 0 0 0 chr6 168382114 168382136 -20897418 + AT_rich Low_complexity Low_complexity 1 22 0 2336 102 0 0 chr6 168382580 168382883 -20896671 + AluSx SINE Alu 1 303 -9 37 39 0 0 chr6 168383709 168383760 -20895794 + AT_rich Low_complexity Low_complexity 1 51 0 537 311 34 0 chr6 168384091 168384239 -20895315 + MIR3 SINE MIR 25 177 -31 42 48 0 0 chr6 168385121 168385184 -20894370 + AT_rich Low_complexity Low_complexity 1 63 0 3836 161 21 15 chr6 168385218 168385964 -20893590 - L1MB8 LINE L1 0 6178 5428 2200 122 26 0 chr6 168387031 168387334 -20892220 + AluSq SINE Alu 1 311 -2 1021 205 17 116 chr6 168387578 168387983 -20891571 + MLT1A1 LTR MaLR 1 365 0 223 205 90 0 chr6 168388433 168388601 -20890953 + (TTATA)n Simple_repeat Simple_repeat 1 183 0 800 257 29 0 chr6 168388756 168388962 -20890592 - MIR SINE MIR 0 262 51 215 208 0 94 chr6 168389344 168389397 -20890157 - L2 LINE L2 -70 3202 3155 2174 102 0 30 chr6 168389886 168390189 -20889365 + AluSg SINE Alu 1 294 -16 25 0 0 0 chr6 168390208 168390233 -20889321 + AT_rich Low_complexity Low_complexity 1 25 0 2221 87 0 7 chr6 168390245 168390531 -20889023 + AluY SINE Alu 21 304 -7 494 118 86 0 chr6 168390539 168390632 -20888922 - L1MA7 LINE L1 -2 6289 6189 1690 125 110 0 chr6 168391051 168391315 -20888239 + AluSx SINE Alu 1 293 -19 350 291 42 24 chr6 168392533 168392698 -20886856 - L1ME4a LINE L1 -4 6117 5950 1421 194 30 72 chr6 168394967 168395436 -20884118 + LTR10B LTR ERV1 1 547 0 767 92 8 8 chr6 168395649 168395780 -20883774 - L1MA7 LINE L1 -4 6287 6157 929 171 0 39 chr6 168395781 168395986 -20883568 + L1MA7 LINE L1 5933 6129 -162 2277 85 3 0 chr6 168396452 168396735 -20882819 + AluSg1 SINE Alu 1 284 -25 369 109 0 0 chr6 168396739 168396794 -20882760 + (GGGGA)n Simple_repeat Simple_repeat 3 57 0 22 56 0 0 chr6 168397464 168397500 -20882054 + AT_rich Low_complexity Low_complexity 1 36 0 365 281 42 0 chr6 168398014 168398110 -20881444 + L1MC4 LINE L1 6613 6712 -1330 331 283 97 9 chr6 168398019 168398132 -20881422 - L1MC4 LINE L1 -1339 6703 6581 * 878 228 11 0 chr6 168398157 168398337 -20881217 - MIR SINE MIR -49 213 32 339 25 0 0 chr6 168398393 168398433 -20881121 + (CA)n Simple_repeat Simple_repeat 2 41 0 228 205 217 36 chr6 168398559 168398642 -20880912 - L2 LINE L2 -1058 2256 2159 21 0 0 0 chr6 168399298 168399319 -20880235 + AT_rich Low_complexity Low_complexity 1 21 0 334 249 22 122 chr6 168399388 168399584 -20879970 + MIR3 SINE MIR 30 208 0 286 276 41 81 chr6 168399794 168399917 -20879637 - MIR SINE MIR -65 143 26 25 0 0 0 chr6 168400374 168400399 -20879155 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr6 168400952 168400977 -20878577 + AT_rich Low_complexity Low_complexity 1 25 0 261 231 15 60 chr6 168401568 168401702 -20877852 + A-rich Low_complexity Low_complexity 3 130 0 24 32 0 0 chr6 168402029 168402060 -20877494 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr6 168402641 168402664 -20876890 + AT_rich Low_complexity Low_complexity 1 23 0 284 283 138 22 chr6 168402705 168403112 -20876442 + L1MC5 LINE L1 7316 7769 -192 1402 149 0 14 chr6 168403149 168403363 -20876191 - AluJb SINE Alu -16 296 86 26 0 0 0 chr6 168403549 168403575 -20875979 + AT_rich Low_complexity Low_complexity 1 26 0 1653 72 41 0 chr6 168403952 168404173 -20875381 + MER30 DNA MER1_type 1 230 0 213 39 0 0 chr6 168404846 168404890 -20874664 + (TG)n Simple_repeat Simple_repeat 1 70 0 213 39 0 0 chr6 168404890 168404916 -20874638 + (TG)n Simple_repeat Simple_repeat 2 27 0 33 0 0 0 chr6 168404968 168405001 -20874553 + AT_rich Low_complexity Low_complexity 1 33 0 206 360 52 52 chr6 168405953 168406089 -20873465 - L2 LINE L2 -12 3260 3125 1968 100 28 3 chr6 168406447 168406737 -20872817 - AluSx SINE Alu -15 297 1 2276 98 7 7 chr6 168407397 168407703 -20871851 - AluSg SINE Alu -4 306 1 2392 81 3 0 chr6 168408476 168408773 -20870781 - AluSp SINE Alu -15 298 1 1604 197 10 10 chr6 168408855 168409150 -20870404 - AluJb SINE Alu -13 299 5 369 252 110 16 chr6 168410268 168410395 -20869159 + MIR SINE MIR 66 204 -58 1989 146 0 16 chr6 168410419 168410727 -20868827 - AluJo SINE Alu -9 303 1 283 241 123 62 chr6 168411094 168411289 -20868265 - L2 LINE L2 -35 3278 3072 247 291 163 35 chr6 168411368 168411571 -20867983 + MIR SINE MIR 34 262 0 2156 101 3 58 chr6 168412002 168412329 -20867225 - AluSq SINE Alu -4 309 1 1894 123 4 0 chr6 168412889 168413150 -20866404 + AluSx SINE Alu 1 262 -50 248 0 31 0 chr6 168413406 168413438 -20866116 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 839 224 53 45 chr6 168413727 168413973 -20865581 - MIR SINE MIR 0 262 15 527 283 181 21 chr6 168414052 168414289 -20865265 - L3 LINE CR1 -10 1567 1293 270 0 0 0 chr6 168414613 168414643 -20864911 + (TG)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chr6 168416070 168416098 -20863456 + AT_rich Low_complexity Low_complexity 1 28 0 280 320 82 27 chr6 168418260 168418407 -20861147 - L2 LINE L2 -2 3270 3116 2942 270 125 31 chr6 168418676 168420304 -20859250 + HAL1 LINE L1 99 1879 -628 782 148 0 44 chr6 168420695 168420830 -20858724 + FLAM_C SINE Alu 1 129 -14 216 0 0 0 chr6 168420840 168420864 -20858690 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 279 0 0 0 chr6 168420863 168420894 -20858660 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chr6 168420894 168420918 -20858636 + AT_rich Low_complexity Low_complexity 1 24 0 315 0 0 0 chr6 168420968 168421003 -20858551 + (CA)n Simple_repeat Simple_repeat 2 36 0 26 0 0 0 chr6 168421521 168421547 -20858007 + AT_rich Low_complexity Low_complexity 1 26 0 26 50 0 0 chr6 168423057 168423097 -20856457 + AT_rich Low_complexity Low_complexity 1 40 0 1395 188 58 31 chr6 168423097 168423390 -20856164 + AluJo SINE Alu 1 301 -11 2275 93 0 3 chr6 168424062 168424363 -20855191 - AluSx SINE Alu -12 300 1 2756 19 0 3 chr6 168424589 168424901 -20854653 + AluYa5 SINE Alu 1 311 0 1887 138 3 11 chr6 168425102 168425432 -20854122 + AluSp SINE Alu 3 330 0 878 247 44 22 chr6 168426453 168426680 -20852874 - MIR SINE MIR 0 262 31 378 0 0 0 chr6 168426931 168426973 -20852581 + (T)n Simple_repeat Simple_repeat 1 42 0 2271 108 7 0 chr6 168427357 168427662 -20851892 - AluSx SINE Alu -5 307 1 1734 166 7 4 chr6 168428930 168429207 -20850347 + AluSx SINE Alu 1 278 -34 216 0 0 0 chr6 168429210 168429234 -20850320 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2073 89 0 41 chr6 168429251 168429581 -20849973 + AluSc SINE Alu 1 318 0 1415 142 16 0 chr6 168430113 168430360 -20849194 + L1MA6 LINE L1 6049 6299 -1 1871 158 6 29 chr6 168430363 168430679 -20848875 + AluSx SINE Alu 1 309 -3 1075 258 96 37 chr6 168430839 168431483 -20848071 + HAL1b LINE L1 77 758 -590 2309 122 0 0 chr6 168431845 168432157 -20847397 - AluSx SINE Alu 0 312 1 236 258 45 0 chr6 168432719 168432785 -20846769 + MIR SINE MIR 108 176 -86 1807 167 73 9 chr6 168433775 168434092 -20845462 - MER1B DNA MER1_type 0 337 1 285 374 0 6 chr6 168435673 168435844 -20843710 + (CAGGG)n Simple_repeat Simple_repeat 1 170 0 294 392 0 5 chr6 168435993 168436368 -20843186 + (CAGGG)n Simple_repeat Simple_repeat 1 373 0 1464 186 16 39 chr6 168436504 168436810 -20842744 - AluJo SINE Alu -13 299 1 661 274 74 9 chr6 168436820 168437035 -20842519 + MIR SINE MIR 32 260 -2 2156 124 34 0 chr6 168437047 168437345 -20842209 + AluSx SINE Alu 1 308 -4 2066 144 0 10 chr6 168437627 168437925 -20841629 + AluJo SINE Alu 1 295 -17 2151 120 13 0 chr6 168438040 168438339 -20841215 + AluSx SINE Alu 1 303 -9 345 265 62 13 chr6 168438342 168438520 -20841034 + L1ME2 LINE L1 5701 5890 -274 30 0 0 0 chr6 168439278 168439308 -20840246 + AT_rich Low_complexity Low_complexity 1 30 0 205 161 0 0 chr6 168439923 168439954 -20839600 + (TATG)n Simple_repeat Simple_repeat 3 33 0 310 304 93 40 chr6 168440103 168440350 -20839204 - L1ME4a LINE L1 -246 5875 5616 182 211 327 10 chr6 168440506 168440610 -20838944 - MIR3 SINE MIR -35 173 37 288 376 88 26 chr6 168443891 168444117 -20835437 - L2 LINE L2 -221 3092 2853 297 196 0 120 chr6 168446576 168446668 -20832886 - MIR SINE MIR -108 154 74 646 281 82 24 chr6 168446696 168446988 -20832566 + MER102b DNA MER1_type 33 341 0 305 198 51 18 chr6 168447410 168447522 -20832032 - L1ME4a LINE L1 -756 5395 5285 2174 88 4 0 chr6 168447689 168447996 -20831558 - AluSq SINE Alu 0 320 13 1667 165 0 63 chr6 168448003 168448319 -20831235 - AluJo SINE Alu -16 296 1 1964 147 3 7 chr6 168448710 168449016 -20830538 + AluJb SINE Alu 1 305 -7 2321 117 0 0 chr6 168449140 168449447 -20830107 - AluSx SINE Alu -5 307 1 21 0 0 0 chr6 168449453 168449474 -20830080 + AT_rich Low_complexity Low_complexity 1 21 0 277 204 23 121 chr6 168449663 168449795 -20829759 + L2 LINE L2 1400 1518 -1796 580 235 55 142 chr6 168449972 168449991 -20829563 + L2 LINE L2 1536 1555 -1759 2261 100 0 19 chr6 168449991 168450302 -20829252 - AluY SINE Alu -6 305 1 580 235 55 142 chr6 168450302 168450378 -20829176 + L2 LINE L2 1555 1636 -1678 2288 109 0 31 chr6 168450378 168450700 -20828854 - AluSx SINE Alu 0 312 1 580 235 55 142 chr6 168450700 168451025 -20828529 + L2 LINE L2 1636 1920 -1394 2297 82 3 22 chr6 168451558 168451875 -20827679 - AluY SINE Alu 0 311 1 1717 187 0 10 chr6 168451876 168452181 -20827373 - AluJo SINE Alu -8 304 3 252 86 0 0 chr6 168452244 168452279 -20827275 + (T)n Simple_repeat Simple_repeat 1 35 0 192 143 0 0 chr6 168452356 168452398 -20827156 + (A)n Simple_repeat Simple_repeat 1 42 0 2058 137 3 7 chr6 168452546 168452852 -20826702 + AluJb SINE Alu 1 305 -7 606 220 63 82 chr6 168452966 168453234 -20826320 - ORSL DNA AcHobo 0 275 13 213 140 40 20 chr6 168453338 168453388 -20826166 + (TTTAA)n Simple_repeat Simple_repeat 5 55 0 1421 103 70 0 chr6 168453447 168453661 -20825893 - MER30 DNA MER1_type -1 229 1 720 250 24 18 chr6 168455162 168455330 -20824224 + MER5B DNA MER1_type 1 169 -9 499 265 61 10 chr6 168455463 168455659 -20823895 - Charlie8 DNA MER1_type -2137 280 75 45 79 0 0 chr6 168455732 168455833 -20823721 + AT_rich Low_complexity Low_complexity 1 101 0 274 93 0 0 chr6 168455901 168455944 -20823610 + MADE1 DNA Mariner 1 43 -37 209 324 117 18 chr6 168456075 168456186 -20823368 - L2 LINE L2 0 3272 3151 24 0 0 0 chr6 168456312 168456336 -20823218 + AT_rich Low_complexity Low_complexity 1 24 0 2130 119 0 7 chr6 168456630 168456947 -20822607 - AluSg SINE Alu 0 310 1 200 346 0 12 chr6 168457493 168457574 -20821980 + MIR SINE MIR 85 164 -98 1310 146 120 73 chr6 168457575 168457850 -20821704 - AluJo SINE Alu -16 296 9 1139 285 143 24 chr6 168458083 168458910 -20820644 + L2 LINE L2 2171 3108 -205 637 310 99 9 chr6 168459273 168459605 -20819949 - L1ME3A LINE L1 -18 6152 5791 570 193 84 89 chr6 168459611 168460055 -20819499 - L1ME3A LINE L1 -690 5480 5040 606 225 33 0 chr6 168460060 168460180 -20819374 + MER5C DNA MER1_type 2 125 -199 223 173 148 62 chr6 168460199 168460280 -20819274 + MER5C DNA MER1_type 228 315 -9 466 304 28 8 chr6 168460387 168460634 -20818920 - L1ME3A LINE L1 -1251 4895 4644 2151 119 3 0 chr6 168460673 168460959 -20818595 - AluSx SINE Alu -25 287 1 2253 104 3 7 chr6 168461661 168461958 -20817596 - AluSx SINE Alu -16 296 1 919 151 7 0 chr6 168462083 168462235 -20817319 + L1MB5 LINE L1 6022 6174 0 1190 144 67 14 chr6 168462510 168462718 -20816836 - AluSg/x SINE Alu -8 304 86 2387 63 0 0 chr6 168462731 168463038 -20816516 - AluY SINE Alu 0 307 1 180 0 0 0 chr6 168463038 168463058 -20816496 + (T)n Simple_repeat Simple_repeat 1 20 0 646 102 0 0 chr6 168463058 168463146 -20816408 - 5S rRNA rRNA -1 120 33 2288 106 3 0 chr6 168463387 168463680 -20815874 + AluSx SINE Alu 1 294 -18 379 244 0 28 chr6 168464175 168464351 -20815203 + (TATAA)n Simple_repeat Simple_repeat 3 173 0 * 408 213 0 33 chr6 168464231 168464414 -20815140 + (TTATA)n Simple_repeat Simple_repeat 4 180 0 225 94 0 0 chr6 168466480 168466512 -20813042 + (TC)n Simple_repeat Simple_repeat 1 32 0 23 33 0 0 chr6 168467724 168467754 -20811800 + AT_rich Low_complexity Low_complexity 1 30 0 363 78 0 0 chr6 168468728 168468779 -20810775 + (CA)n Simple_repeat Simple_repeat 2 52 0 202 320 176 25 chr6 168469179 168469463 -20810091 + L2 LINE L2 1812 2138 -1176 486 330 64 0 chr6 168469724 168469988 -20809566 + Charlie8 DNA MER1_type 1 281 -2136 446 293 78 62 chr6 168470064 168470689 -20808865 + L2 LINE L2 2626 3268 -4 25 31 0 0 chr6 168470847 168470879 -20808675 + AT_rich Low_complexity Low_complexity 1 32 0 378 0 0 0 chr6 168470894 168470936 -20808618 + (TG)n Simple_repeat Simple_repeat 1 42 0 360 327 39 13 chr6 168472562 168472715 -20806839 + L2 LINE L2 3116 3272 0 847 101 0 2 chr6 168476284 168476532 -20803022 + AluSx SINE Alu 1 297 -13 275 182 30 0 chr6 168476582 168476648 -20802906 + (CATA)n Simple_repeat Simple_repeat 3 70 0 1863 155 23 20 chr6 168476651 168476993 -20802561 + MER2 DNA MER2_type 2 344 0 228 67 0 0 chr6 168477010 168477040 -20802514 + (CA)n Simple_repeat Simple_repeat 1 30 0 2139 90 39 7 chr6 168477435 168477735 -20801819 - AluSx SINE Alu 0 312 2 301 290 109 29 chr6 168477880 168478018 -20801536 - MER5A DNA MER1_type -6 183 35 2194 101 3 3 chr6 168478390 168478676 -20800878 - AluSg SINE Alu -24 286 1 293 346 59 20 chr6 168479004 168479157 -20800397 + MIR3 SINE MIR 9 167 -41 259 368 48 0 chr6 168479171 168479296 -20800258 + MIR SINE MIR 20 150 -112 2207 78 0 7 chr6 168479316 168479622 -20799932 + AluY SINE Alu 1 304 0 425 81 81 27 chr6 168480436 168480459 -20799095 + MADE1 DNA Mariner 3 23 -57 2172 113 6 31 chr6 168480459 168480779 -20798775 - AluSq SINE Alu -1 312 1 425 81 81 27 chr6 168480779 168480829 -20798725 + MADE1 DNA Mariner 23 80 0 293 259 130 37 chr6 168480993 168481101 -20798453 - MIR SINE MIR -111 151 34 2350 103 0 0 chr6 168481192 168481492 -20798062 + AluSq SINE Alu 1 300 -13 210 37 0 0 chr6 168481495 168481522 -20798032 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2020 147 76 15 chr6 168482473 168482814 -20796740 + THE1B LTR MaLR 3 364 0 228 234 0 0 chr6 168482866 168482913 -20796641 + (CA)n Simple_repeat Simple_repeat 1 47 0 2324 121 0 3 chr6 168485181 168485494 -20794060 - AluSx SINE Alu 0 312 1 1125 153 11 11 chr6 168486767 168486956 -20792598 + AluSg/x SINE Alu 116 304 -6 21 0 0 0 chr6 168488857 168488878 -20790676 + AT_rich Low_complexity Low_complexity 1 21 0 952 208 56 0 chr6 168488888 168489085 -20790469 - MER58A DNA MER1_type -4 220 13 339 191 52 7 chr6 168489226 168489362 -20790192 + (TA)n Simple_repeat Simple_repeat 2 143 0 274 416 75 6 chr6 168490432 168490593 -20788961 + L2 LINE L2 3101 3272 0 240 122 0 0 chr6 168492403 168492444 -20787110 + (TG)n Simple_repeat Simple_repeat 2 42 0 889 313 74 62 chr6 168492444 168493498 -20786056 + L2 LINE L2 2238 3312 -1 271 267 23 12 chr6 168493552 168493638 -20785916 - MIR SINE MIR -94 168 82 399 359 131 22 chr6 168493643 168494286 -20785268 - L2 LINE L2 0 3272 2554 23 0 0 0 chr6 168494542 168494565 -20784989 + AT_rich Low_complexity Low_complexity 1 23 0 1658 163 61 7 chr6 168496208 168496503 -20783051 + AluJb SINE Alu 1 311 -1 315 293 108 42 chr6 168497223 168497435 -20782119 + MIR SINE MIR 20 245 -17 365 320 137 39 chr6 168498119 168498224 -20781330 + L1ME LINE L1 5505 5598 -523 2388 96 7 0 chr6 168498224 168498526 -20781028 + AluSg SINE Alu 1 304 -6 365 320 137 39 chr6 168498526 168498704 -20780850 + L1ME LINE L1 5598 5816 -305 298 106 0 0 chr6 168498716 168498763 -20780791 - Alu SINE Alu -4 298 252 416 285 21 0 chr6 168498870 168499014 -20780540 - ERVL LTR ERVL -1438 4326 4180 1767 318 37 15 chr6 168499049 168499838 -20779716 - ERVL LTR ERVL -1667 4097 3292 1048 304 36 15 chr6 168499857 168500358 -20779196 - ERVL LTR ERVL -1990 3006 2668 476 330 32 48 chr6 168500394 168500956 -20778598 - ERVL LTR ERVL -2639 2357 1969 499 263 47 6 chr6 168500971 168501142 -20778412 + L1MD2 LINE L1 6165 6342 -17 204 67 0 0 chr6 168501257 168501287 -20778267 + (CA)n Simple_repeat Simple_repeat 1 30 0 295 347 0 0 chr6 168503185 168503257 -20776297 - L2 LINE L2 0 3272 3201 803 251 73 79 chr6 168503400 168503893 -20775661 - MER34B LTR ERV1 -75 490 1 204 365 56 0 chr6 168503976 168504102 -20775452 - L2 LINE L2 -230 3042 2910 650 308 84 23 chr6 168505193 168505540 -20774014 + MLT1L LTR MaLR 217 584 -31 410 282 144 23 chr6 168505619 168505793 -20773761 + MIR3 SINE MIR 7 201 -7 2163 110 10 3 chr6 168506951 168507250 -20772304 - AluSq SINE Alu -12 301 1 240 111 0 0 chr6 168507786 168507831 -20771723 + (CAAAC)n Simple_repeat Simple_repeat 5 49 0 374 206 11 11 chr6 168508712 168508804 -20770750 - MLT1C LTR MaLR 0 467 376 357 62 0 0 chr6 168508879 168508927 -20770627 + (TG)n Simple_repeat Simple_repeat 2 49 0 453 169 24 81 chr6 168508932 168509056 -20770498 - MLT1C LTR MaLR -285 182 66 3291 134 23 59 chr6 168509074 168509723 -20769831 - L1MA7 LINE L1 -10 6281 5656 263 169 185 0 chr6 168509724 168509789 -20769765 - MLT1C LTR MaLR -385 82 6 222 150 0 0 chr6 168510127 168510167 -20769387 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 1467 172 0 38 chr6 168510500 168510767 -20768787 + AluJo SINE Alu 1 257 -55 574 182 0 15 chr6 168510773 168510905 -20768649 + GA-rich Low_complexity Low_complexity 2 131 0 22 0 0 0 chr6 168511972 168511994 -20767560 + AT_rich Low_complexity Low_complexity 1 22 0 828 332 104 21 chr6 168513525 168513856 -20765698 + L2 LINE L2 2261 2563 -751 1934 134 25 35 chr6 168513856 168514170 -20765384 - AluSx SINE Alu -1 311 1 828 332 104 21 chr6 168514170 168514500 -20765054 + L2 LINE L2 2563 2977 -337 213 209 23 0 chr6 168514490 168514533 -20765021 + CT-rich Low_complexity Low_complexity 2 45 0 * 431 276 78 0 chr6 168514543 168514659 -20764895 - L2 LINE L2 0 3313 3189 487 263 26 53 chr6 168514823 168514975 -20764579 + L2 LINE L2 3124 3271 -1 274 270 118 33 chr6 168515117 168515269 -20764285 - L2 LINE L2 -1605 1709 1545 762 216 34 6 chr6 168515349 168515525 -20764029 + MER33 DNA MER1_type 6 186 -138 3686 142 42 32 chr6 168515554 168516176 -20763378 + MER82 DNA MER2_type 25 652 -1 545 190 28 21 chr6 168516176 168516304 -20763250 + MER33 DNA MER1_type 192 320 -4 279 341 83 30 chr6 168517232 168517364 -20762190 - L2 LINE L2 -181 3091 2953 533 257 211 28 chr6 168517392 168517569 -20761985 + MLT1G1 LTR MaLR 1 144 -398 194 0 39 0 chr6 168517569 168517595 -20761959 + (GAA)n Simple_repeat Simple_repeat 2 28 0 533 257 211 28 chr6 168517595 168517908 -20761646 + MLT1G1 LTR MaLR 144 530 -12 265 279 93 12 chr6 168518130 168518216 -20761338 + MIR SINE MIR 30 122 -86 779 269 200 37 chr6 168518305 168519040 -20760514 - HAL1 LINE L1 -11 2496 1642 783 301 14 7 chr6 168519043 168519335 -20760219 - HAL1 LINE L1 -1137 1370 1077 1721 175 0 14 chr6 168519813 168520105 -20759449 - AluJb SINE Alu -24 288 1 386 300 14 21 chr6 168520211 168520351 -20759203 + MER117 DNA MER1_type 1 139 -58 632 246 97 64 chr6 168521234 168521564 -20757990 - MLT1J LTR MaLR -8 503 163 458 305 37 21 chr6 168521902 168522092 -20757462 + LTR16C LTR ERVL 299 491 0 270 292 50 33 chr6 168522095 168522215 -20757339 - MLT1J LTR MaLR -354 157 36 1654 178 3 32 chr6 168522806 168523120 -20756434 + AluJo SINE Alu 5 309 -3 1142 251 30 14 chr6 168523739 168524034 -20755520 + MLT1I LTR MaLR 107 406 -3 334 365 48 8 chr6 168524105 168524231 -20755323 - L2 LINE L2 -4 3268 3138 22 35 0 0 chr6 168524259 168524288 -20755266 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr6 168524385 168524407 -20755147 + (CA)n Simple_repeat Simple_repeat 1 22 0 241 308 87 19 chr6 168524622 168524726 -20754828 + L2 LINE L2 3136 3246 -26 343 197 0 0 chr6 168527062 168527128 -20752426 - Alu SINE Alu 0 302 237 189 0 0 0 chr6 168527169 168527190 -20752364 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1633 171 0 57 chr6 168527193 168527492 -20752062 - AluJo SINE Alu -30 282 1 21 0 0 0 chr6 168528002 168528023 -20751531 + AT_rich Low_complexity Low_complexity 1 21 0 603 204 0 8 chr6 168528342 168528474 -20751080 - L1MA4 LINE L1 -5 6295 6165 2121 241 30 35 chr6 168528909 168529485 -20750069 - L1M4 LINE L1 -5688 854 282 611 266 60 22 chr6 168529512 168529696 -20749858 + MLT1L LTR MaLR 43 233 -382 235 221 84 63 chr6 168529723 168529818 -20749736 - MER5A DNA MER1_type -86 103 7 2183 119 0 7 chr6 168529870 168530172 -20749382 + AluSg SINE Alu 1 300 -10 682 272 109 18 chr6 168530182 168530465 -20749089 + MLT1L LTR MaLR 295 603 -12 198 0 0 0 chr6 168530588 168530610 -20748944 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 1091 245 16 4 chr6 168530846 168531095 -20748459 - MER112 DNA MER1_type -1 259 8 269 220 119 0 chr6 168531341 168531450 -20748104 - L1ME4a LINE L1 0 6121 6000 21 0 0 0 chr6 168532178 168532199 -20747355 + AT_rich Low_complexity Low_complexity 1 21 0 209 302 0 16 chr6 168532278 168532341 -20747213 - MIR3 SINE MIR -8 200 139 2395 180 40 4 chr6 168532659 168533109 -20746445 - MLT1C LTR MaLR 0 467 2 445 198 155 9 chr6 168533172 168533288 -20746266 - MIR SINE MIR -88 174 42 510 268 89 6 chr6 168533325 168533504 -20746050 - L2 LINE L2 -18 3295 3102 4823 177 27 29 chr6 168534272 168535052 -20744502 - L1MB3 LINE L1 0 6183 5405 2179 122 0 0 chr6 168535052 168535347 -20744207 - AluSq SINE Alu -18 295 1 4823 177 27 29 chr6 168535347 168535914 -20743640 - L1MB3 LINE L1 -778 5405 4838 280 312 98 89 chr6 168535958 168536387 -20743167 - L2 LINE L2 -16 3256 2824 323 328 106 16 chr6 168538287 168538476 -20741078 - MIR SINE MIR -34 228 23 209 298 60 48 chr6 168538584 168538668 -20740886 - L2 LINE L2 -45 3227 3143 353 77 0 0 chr6 168538969 168539021 -20740533 - FAM SINE Alu -2 173 122 2491 87 81 0 chr6 168539269 168539639 -20739915 + L1PB1 LINE L1 5522 5921 -230 266 250 37 56 chr6 168539935 168540043 -20739511 + MLT1H LTR MaLR 440 545 -4 326 208 56 0 chr6 168540050 168540122 -20739432 + HAL1 LINE L1 1268 1343 -1164 512 244 9 0 chr6 168540149 168540264 -20739290 - HERV16 LTR ERVL -3169 1827 1712 1465 320 53 18 chr6 168540287 168540950 -20738604 - HERV16 LTR ERVL -3539 1457 772 303 323 55 18 chr6 168541333 168541497 -20738057 - HERV16 LTR ERVL -4766 230 61 1868 244 33 20 chr6 168541517 168541975 -20737579 - LTR16B LTR ERVL 0 464 1 1278 259 154 22 chr6 168541975 168542559 -20736995 + HAL1 LINE L1 1531 2191 -316 429 213 213 62 chr6 168542561 168542786 -20736768 + HAL1 LINE L1 2235 2493 -14 22 88 0 0 chr6 168542787 168542844 -20736710 + AT_rich Low_complexity Low_complexity 1 57 0 194 348 37 31 chr6 168542895 168543056 -20736498 - L3 LINE CR1 -861 716 555 1515 193 65 73 chr6 168543268 168543313 -20736241 - MSTD LTR MaLR 0 396 352 2358 70 0 0 chr6 168543313 168543623 -20735931 - AluY SINE Alu 0 310 1 1515 193 65 73 chr6 168543623 168543975 -20735579 - MSTD LTR MaLR -44 352 1 2538 266 94 14 chr6 168544465 168545360 -20734194 - L2 LINE L2 -1898 1416 451 2042 141 3 0 chr6 168545370 168545667 -20733887 - AluSx SINE Alu -10 302 5 23 33 0 0 chr6 168545825 168545855 -20733699 + AT_rich Low_complexity Low_complexity 1 30 0 1793 154 20 10 chr6 168546583 168546875 -20732679 + AluSx SINE Alu 1 295 -17 285 264 0 35 chr6 168547586 168547673 -20731881 + L2 LINE L2 3229 3312 -1 235 288 101 25 chr6 168548014 168548212 -20731342 + L1ME4a LINE L1 5905 6117 -4 654 222 100 123 chr6 168549290 168549641 -20729913 - MLT1H LTR MaLR -206 343 1 282 282 64 0 chr6 168549855 168549933 -20729621 - L2 LINE L2 -2 3311 3229 318 192 41 0 chr6 168550277 168550350 -20729204 - L1MB2 LINE L1 0 6171 6096 245 157 0 59 chr6 168550519 168550570 -20728984 + MLT1K LTR MaLR 224 271 -317 232 127 36 0 chr6 168550675 168550730 -20728824 + (TG)n Simple_repeat Simple_repeat 1 57 0 450 239 9 18 chr6 168550733 168550846 -20728708 + L2 LINE L2 3197 3308 -5 495 227 53 0 chr6 168550925 168551057 -20728497 + MER112 DNA MER1_type 77 215 -45 188 133 0 0 chr6 168552044 168552074 -20727480 + MIR SINE MIR 124 153 -109 6722 69 8 2 chr6 168552575 168553772 -20725782 + L1P3 LINE L1 4477 5677 -477 5545 245 56 31 chr6 168553880 168554702 -20724852 + L1M4 LINE L1 2772 3572 -2574 1608 253 46 36 chr6 168554702 168555200 -20724354 - MLT1D LTR MaLR -2 503 1 5545 245 56 31 chr6 168555200 168555891 -20723663 + L1M4 LINE L1 3572 4346 -1800 1899 159 21 0 chr6 168555891 168556181 -20723373 + AluJb SINE Alu 1 296 -16 5545 245 56 31 chr6 168556181 168556622 -20722932 + L1M4 LINE L1 4346 4775 -1371 2999 193 72 60 chr6 168556796 168556925 -20722629 - L1M4 LINE L1 -1333 4813 4687 2513 39 3 13 chr6 168556925 168557230 -20722324 - AluY SINE Alu -9 302 1 2999 193 72 60 chr6 168557230 168558007 -20721547 - L1M4 LINE L1 -1459 4687 3896 805 99 0 0 chr6 168558054 168558155 -20721399 - AluS SINE Alu -210 102 2 1387 247 63 18 chr6 168558186 168558613 -20720941 + LTR51 LTR ERV1 228 842 -81 189 328 70 31 chr6 168558798 168558926 -20720628 + L2 LINE L2 3180 3312 -1 200 337 35 41 chr6 168559378 168559547 -20720007 + L3b LINE CR1 1317 1484 -99 297 349 14 7 chr6 168559676 168559822 -20719732 - ERVL LTR ERVL -765 4999 4853 1743 214 95 31 chr6 168560258 168560679 -20718875 - LTR16A LTR ERVL -2 448 1 1206 307 70 29 chr6 168561301 168561961 -20717593 - ERVL LTR ERVL -867 4787 4102 647 193 20 7 chr6 168561967 168562117 -20717437 + Charlie1 DNA MER1_type 2610 2761 0 360 0 0 0 chr6 168562512 168562552 -20717002 + (TG)n Simple_repeat Simple_repeat 2 41 0 2176 102 0 0 chr6 168563039 168563323 -20716231 - AluSc SINE Alu -15 294 11 807 126 39 8 chr6 168564240 168564367 -20715187 + AluJb SINE Alu 2 132 -180 21 36 0 0 chr6 168565242 168565270 -20714284 + AT_rich Low_complexity Low_complexity 1 28 0 853 148 0 8 chr6 168565361 168565489 -20714065 + AluSq/x SINE Alu 1 127 -185 192 125 0 0 chr6 168565855 168565887 -20713667 + (T)n Simple_repeat Simple_repeat 1 32 0 390 284 43 31 chr6 168566733 168566895 -20712659 - L2 LINE L2 -190 3082 2919 2209 71 3 32 chr6 168566977 168567285 -20712269 - AluY SINE Alu -12 299 1 390 190 40 35 chr6 168567326 168567405 -20712149 + (TA)n Simple_repeat Simple_repeat 1 78 -97 2288 99 10 0 chr6 168567405 168567708 -20711846 - AluSp SINE Alu -7 306 1 390 190 40 35 chr6 168567708 168567802 -20711752 + (TA)n Simple_repeat Simple_repeat 78 175 0 51 51 0 0 chr6 168567809 168567888 -20711666 + AT_rich Low_complexity Low_complexity 1 79 0 2161 206 28 65 chr6 168568062 168568636 -20710918 - MER41C LTR ERV1 -1 553 1 1921 121 4 4 chr6 168568655 168568928 -20710626 - AluSx SINE Alu -3 309 37 206 301 142 61 chr6 168569062 168569507 -20710047 + L2 LINE L2 2373 2853 -461 317 300 56 118 chr6 168569597 168569884 -20709670 + L2 LINE L2 3003 3271 -1 289 193 0 0 chr6 168569887 168569944 -20709610 + AluJ/FLAM SINE Alu 19 75 -227 1016 196 5 23 chr6 168570515 168570729 -20708825 - MER6B DNA MER2_type 0 210 1 271 215 0 0 chr6 168570742 168570807 -20708747 + A-rich Low_complexity Low_complexity 1 65 0 22 0 0 0 chr6 168571417 168571439 -20708115 + AT_rich Low_complexity Low_complexity 1 22 0 230 327 98 46 chr6 168571779 168571932 -20707622 - MIR SINE MIR -82 180 20 2092 128 0 26 chr6 168571939 168572251 -20707303 - AluSg SINE Alu -6 304 1 2002 104 0 119 chr6 168572315 168572660 -20706894 - AluSx SINE Alu -8 304 1 21 0 0 0 chr6 168573976 168573997 -20705557 + AT_rich Low_complexity Low_complexity 1 21 0 953 109 0 0 chr6 168574957 168575095 -20704459 - AluSg/x SINE Alu -10 300 163 282 322 124 41 chr6 168575196 168575438 -20704116 + L2 LINE L2 2562 2823 -491 905 179 18 65 chr6 168575495 168575724 -20703830 + MER20 DNA MER1_type 1 218 -1 571 302 99 22 chr6 168575770 168576167 -20703387 + L2 LINE L2 2794 3270 -43 264 100 0 0 chr6 168577454 168577494 -20702060 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1768 149 4 0 chr6 168577499 168577768 -20701786 - AluJo SINE Alu -42 270 1 1756 170 3 3 chr6 168577936 168578242 -20701312 - AluSx SINE Alu 0 306 1 2393 84 3 0 chr6 168578520 168578816 -20700738 + AluSp SINE Alu 2 298 -15 189 121 0 0 chr6 168578956 168578989 -20700565 + (TG)n Simple_repeat Simple_repeat 2 34 0 1901 166 33 18 chr6 168579399 168579731 -20699823 + MER1B DNA MER1_type 1 337 0 36 0 0 0 chr6 168580076 168580112 -20699442 + AT_rich Low_complexity Low_complexity 1 36 0 2165 130 10 0 chr6 168580121 168580422 -20699132 + AluSx SINE Alu 1 304 -8 23 33 0 0 chr6 168580636 168580666 -20698888 + AT_rich Low_complexity Low_complexity 1 30 0 265 254 0 51 chr6 168580675 168580793 -20698761 - L1ME4a LINE L1 -28 6093 5982 1084 134 8 117 chr6 168581214 168581453 -20698101 + MER41C LTR ERV1 2 214 -340 2236 118 0 0 chr6 168582177 168582474 -20697080 + AluSx SINE Alu 3 299 -13 270 257 0 0 chr6 168583183 168583253 -20696301 + L2 LINE L2 2323 2392 -922 2144 101 3 14 chr6 168583835 168584132 -20695422 + AluSp SINE Alu 1 294 -19 240 35 0 0 chr6 168586541 168586570 -20692984 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2196 114 0 3 chr6 168586575 168586865 -20692689 - AluSx SINE Alu -23 289 1 2041 133 0 26 chr6 168587398 168587749 -20691805 + AluSq SINE Alu 1 313 0 186 133 0 0 chr6 168588780 168588810 -20690744 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr6 168588812 168588833 -20690721 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1757 146 12 0 chr6 168588845 168589099 -20690455 - AluSx SINE Alu -55 257 1 22 0 0 0 chr6 168590582 168590604 -20688950 + AT_rich Low_complexity Low_complexity 1 22 0 2261 50 7 26 chr6 168591295 168591598 -20687956 - AluY SINE Alu -14 297 1 2048 114 17 7 chr6 168591704 168591994 -20687560 - AluSx SINE Alu -18 294 2 180 0 0 0 chr6 168592657 168592677 -20686877 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2146 34 45 4 chr6 168592677 168592941 -20686613 - AluY SINE Alu -36 275 1 313 335 54 41 chr6 168593111 168593332 -20686222 - L2 LINE L2 -62 3210 2987 292 264 0 35 chr6 168595141 168595228 -20684326 - L2 LINE L2 -1 3312 3229 1859 143 20 17 chr6 168595937 168596231 -20683323 - AluSx SINE Alu -17 295 1 248 263 126 11 chr6 168596712 168596807 -20682747 - MIR SINE MIR -116 146 41 1658 163 61 7 chr6 168598592 168598887 -20680667 + AluJb SINE Alu 1 311 -1 338 288 108 42 chr6 168599607 168599819 -20679735 + MIR SINE MIR 20 245 -17 26 50 0 0 chr6 168601221 168601261 -20678293 + AT_rich Low_complexity Low_complexity 1 40 0 1915 49 0 0 chr6 168601361 168601649 -20677905 + AluY SINE Alu 59 346 0 853 295 46 46 chr6 168601697 168602043 -20677511 + LTR16C LTR ERVL 1 349 -142 2738 96 3 5 chr6 168602043 168602419 -20677135 + THE1C LTR MaLR 1 375 0 853 295 46 46 chr6 168602419 168602526 -20677028 + LTR16C LTR ERVL 348 454 -37 619 56 28 19 chr6 168602723 168602830 -20676724 + (GGAA)n Simple_repeat Simple_repeat 1 108 0 1629 185 23 23 chr6 168603547 168603850 -20675704 - AluJo SINE Alu -9 303 1 2427 72 7 0 chr6 168604144 168604449 -20675105 + AluSp SINE Alu 3 309 -4 771 156 0 59 chr6 168604471 168604606 -20674948 + FLAM_C SINE Alu 2 128 -5 248 353 75 15 chr6 168604731 168604864 -20674690 + L2 LINE L2 3110 3250 -22 30 45 0 0 chr6 168606598 168606642 -20672912 + AT_rich Low_complexity Low_complexity 1 44 0 2187 127 3 3 chr6 168607791 168608099 -20671455 + AluSx SINE Alu 1 308 -4 230 180 0 0 chr6 168608362 168608412 -20671142 + L2 LINE L2 3179 3228 -85 632 227 0 8 chr6 168609054 168609182 -20670372 + L2 LINE L2 3187 3313 0 1059 56 0 21 chr6 168609236 168609380 -20670174 + THE1C LTR MaLR 1 141 -234 332 74 56 0 chr6 168609482 168609536 -20670018 + GA-rich Low_complexity Low_complexity 5 61 0 2266 110 0 10 chr6 168610804 168611112 -20668442 - AluSc SINE Alu 0 309 5 23 33 0 0 chr6 168611270 168611300 -20668254 + AT_rich Low_complexity Low_complexity 1 30 0 1258 134 0 0 chr6 168612028 168612207 -20667347 + AluJb SINE Alu 1 179 -133 22 0 0 0 chr6 168612311 168612333 -20667221 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr6 168612451 168612481 -20667073 + (TTTTA)n Simple_repeat Simple_repeat 4 33 0 2051 129 0 7 chr6 168612485 168612771 -20666783 - AluSx SINE Alu -28 284 1 393 241 103 14 chr6 168613197 168613342 -20666212 + MIR SINE MIR 105 262 0 2196 128 0 26 chr6 168613503 168613848 -20665706 - MER1B DNA MER1_type -1 336 1 2506 77 3 0 chr6 168614858 168615169 -20664385 + AluSx SINE Alu 1 312 0 288 0 0 0 chr6 168615171 168615203 -20664351 + (TA)n Simple_repeat Simple_repeat 2 33 0 383 362 20 59 chr6 168615321 168615473 -20664081 - L2 LINE L2 -1 3271 3126 303 296 25 0 chr6 168615591 168615672 -20663882 + MIR SINE MIR 163 245 -17 202 307 61 101 chr6 168616128 168616454 -20663100 + L2 LINE L2 2918 3230 -42 21 36 0 0 chr6 168616896 168616924 -20662630 + AT_rich Low_complexity Low_complexity 1 28 0 194 261 0 22 chr6 168617181 168617227 -20662327 + MIR SINE MIR 2 46 -216 356 343 86 41 chr6 168620847 168621555 -20657999 + L2 LINE L2 1774 2513 -801 459 358 9 30 chr6 168621566 168621798 -20657756 - MIR SINE MIR -15 247 21 243 189 0 0 chr6 168621905 168621958 -20657596 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 187 213 0 21 chr6 168622068 168622115 -20657439 + MIR SINE MIR 174 219 -43 2257 94 0 13 chr6 168622126 168622425 -20657129 + AluSx SINE Alu 3 297 -15 714 251 33 47 chr6 168623714 168623925 -20655629 - MIR SINE MIR -43 219 12 26 64 0 0 chr6 168624527 168624574 -20654980 + AT_rich Low_complexity Low_complexity 1 47 0 973 168 12 12 chr6 168625784 168625957 -20653597 - AluJo SINE Alu -18 294 122 711 219 0 0 chr6 168625989 168626117 -20653437 - AluJo SINE Alu -172 140 13 1029 195 0 5 chr6 168626731 168626936 -20652618 - L1PA13 LINE L1 -5 6158 5955 379 230 59 37 chr6 168627250 168627385 -20652169 - MER20B DNA MER1_type -607 176 39 357 298 61 106 chr6 168628335 168628580 -20650974 + L2 LINE L2 3031 3264 -8 225 94 0 0 chr6 168629102 168629134 -20650420 + (A)n Simple_repeat Simple_repeat 1 32 0 329 103 2 9 chr6 168630161 168630240 -20649314 + L1PA10 LINE L1 6069 6169 0 4008 44 2 2 chr6 168631357 168631855 -20647699 - L1PA7 LINE L1 0 6154 5657 2464 81 10 0 chr6 168632304 168632612 -20646942 - AluSx SINE Alu 0 312 2 258 327 70 30 chr6 168632682 168632881 -20646673 - MIR SINE MIR -54 208 2 247 65 43 22 chr6 168632948 168632994 -20646560 + (CCAA)n Simple_repeat Simple_repeat 2 48 0 230 309 89 53 chr6 168634888 168635134 -20644420 + L2 LINE L2 2138 2392 -922 2370 100 7 0 chr6 168635251 168635552 -20644002 + AluSx SINE Alu 1 303 -9 28 0 0 0 chr6 168636272 168636300 -20643254 + AT_rich Low_complexity Low_complexity 1 28 0 2099 137 7 0 chr6 168637912 168638219 -20641335 + AluSx SINE Alu 1 309 -3 384 125 0 0 chr6 168640275 168640339 -20639215 + (GA)n Simple_repeat Simple_repeat 1 64 0 1849 162 0 3 chr6 168640969 168641266 -20638288 + AluJb SINE Alu 1 296 -16 327 118 0 55 chr6 168641537 168641647 -20637907 + (TA)n Simple_repeat Simple_repeat 2 105 0 189 0 0 0 chr6 168641647 168641668 -20637886 + (CA)n Simple_repeat Simple_repeat 2 22 0 1368 183 125 14 chr6 168642875 168643219 -20636335 + MER63 DNA MER1_type 675 1056 -6 438 289 126 5 chr6 168643458 168643648 -20635906 + L2 LINE L2 3095 3307 -6 2059 115 0 14 chr6 168644116 168644395 -20635159 + AluSx SINE Alu 1 275 -37 202 27 0 54 chr6 168644400 168644437 -20635117 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 2321 92 0 3 chr6 168645290 168645593 -20633961 - AluSx SINE Alu -10 302 1 308 261 0 14 chr6 168645814 168645883 -20633671 - MIR SINE MIR -91 117 50 2277 93 3 3 chr6 168646202 168646502 -20633052 + AluSp SINE Alu 1 300 -13 647 205 0 8 chr6 168647805 168647927 -20631627 + 5S rRNA rRNA 1 121 0 224 91 23 0 chr6 168647938 168647982 -20631572 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1706 167 20 7 chr6 168647982 168648288 -20631266 + AluSx SINE Alu 2 311 -1 566 281 45 45 chr6 168648290 168648603 -20630951 + L1ME4a LINE L1 5615 5927 -194 1148 197 70 80 chr6 168648612 168648863 -20630691 - L1M4 LINE L1 -1164 4982 4735 228 67 0 0 chr6 168648863 168648893 -20630661 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1148 197 70 80 chr6 168648893 168649042 -20630512 - L1M4 LINE L1 -1411 4735 4586 318 169 213 0 chr6 168649050 168649186 -20630368 + L1ME1 LINE L1 5287 5451 -719 276 53 0 0 chr6 168649240 168649278 -20630276 + (CA)n Simple_repeat Simple_repeat 1 38 0 2031 232 89 46 chr6 168649278 168649674 -20629880 + L1ME1 LINE L1 5436 5876 -290 2408 67 0 10 chr6 168649674 168649972 -20629582 + AluY SINE Alu 5 299 -12 2031 232 89 46 chr6 168649972 168650268 -20629286 + L1ME1 LINE L1 5876 6158 -8 2121 120 3 0 chr6 168650382 168650681 -20628873 - AluSx SINE Alu -12 300 1 207 0 0 0 chr6 168651516 168651539 -20628015 + (TA)n Simple_repeat Simple_repeat 2 24 0 1739 191 0 17 chr6 168651654 168651953 -20627601 + AluJo SINE Alu 3 296 -16 256 312 149 20 chr6 168652027 168652177 -20627377 - MIR SINE MIR -56 206 37 598 301 169 16 chr6 168652807 168653186 -20626368 + L2 LINE L2 1098 1534 -1780 252 143 0 0 chr6 168653320 168653362 -20626192 + (A)n Simple_repeat Simple_repeat 1 42 0 3139 99 27 2 chr6 168653382 168653827 -20625727 - MER4C LTR ERV1 -4 461 6 2328 68 0 0 chr6 168654747 168655057 -20624497 + AluY SINE Alu 1 310 0 25 51 0 0 chr6 168655250 168655289 -20624265 + AT_rich Low_complexity Low_complexity 1 39 0 28 0 0 0 chr6 168655306 168655334 -20624220 + AT_rich Low_complexity Low_complexity 1 28 0 1429 168 41 77 chr6 168655587 168655973 -20623581 + MER67C LTR ERV1 1 397 -243 300 176 156 15 chr6 168656119 168656207 -20623347 + MER39 LTR ERV1 1 96 -446 * 325 276 13 0 chr6 168656192 168656268 -20623286 + LTR48 LTR ERV1 157 233 -554 629 175 98 52 chr6 168656367 168656674 -20622880 + LTR48 LTR ERV1 381 787 0 11206 124 42 26 chr6 168657531 168657868 -20621686 + LTR49-int LTR ERV1 4328 4658 -1673 2028 157 0 0 chr6 168657868 168658161 -20621393 + AluSx SINE Alu 1 293 -19 11206 124 42 26 chr6 168658161 168659202 -20620352 + LTR49-int LTR ERV1 4658 5682 -649 2238 108 0 0 chr6 168659202 168659536 -20620018 - AluSq SINE Alu 0 334 1 11206 124 42 26 chr6 168659536 168660028 -20619526 + LTR49-int LTR ERV1 5682 6234 -97 1671 202 0 19 chr6 168660028 168660335 -20619219 - AluJo SINE Alu -7 305 5 11206 124 42 26 chr6 168660335 168660423 -20619131 + LTR49-int LTR ERV1 6234 6319 -12 2422 146 140 18 chr6 168660423 168660943 -20618611 + LTR49 LTR ERV1 1 572 -23 792 291 136 39 chr6 168660998 168661704 -20617850 + L2 LINE L2 2542 3311 -2 235 345 0 11 chr6 168662103 168662190 -20617364 + L2 LINE L2 3228 3313 0 372 296 43 9 chr6 168662215 168662330 -20617224 + L2 LINE L2 3195 3313 0 23 0 0 0 chr6 168663722 168663745 -20615809 + AT_rich Low_complexity Low_complexity 1 23 0 233 234 223 0 chr6 168664842 168664936 -20614618 - L1MC5 LINE L1 -63 7898 7784 27 0 0 0 chr6 168665140 168665167 -20614387 + AT_rich Low_complexity Low_complexity 1 27 0 1013 199 13 8 chr6 168666045 168666281 -20613273 + L1MA4 LINE L1 6029 6265 -35 330 26 0 0 chr6 168666612 168666651 -20612903 + (TAA)n Simple_repeat Simple_repeat 2 40 0 521 275 36 0 chr6 168666667 168666805 -20612749 - MIR SINE MIR -31 231 89 225 290 221 23 chr6 168668760 168668891 -20610663 + MER5A DNA MER1_type 17 173 -16 * 579 248 0 0 chr6 168668793 168668906 -20610648 - MER5A DNA MER1_type -63 126 14 24 77 0 0 chr6 168669414 168669466 -20610088 + AT_rich Low_complexity Low_complexity 1 52 0 22 56 0 0 chr6 168670308 168670344 -20609210 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr6 168672934 168672972 -20606582 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr6 168673134 168673167 -20606387 + AT_rich Low_complexity Low_complexity 1 33 0 1867 180 3 0 chr6 168673825 168674131 -20605423 - AluJo SINE Alu -5 307 1 1391 193 57 14 chr6 168674414 168674694 -20604860 + AluJb SINE Alu 1 292 -20 317 279 158 32 chr6 168674792 168674982 -20604572 + MIR SINE MIR 4 217 -45 22 0 0 0 chr6 168675059 168675081 -20604473 + AT_rich Low_complexity Low_complexity 1 22 0 503 136 0 25 chr6 168675482 168675563 -20603991 + AluS SINE Alu 220 298 -11 231 312 75 11 chr6 168676089 168676182 -20603372 + MIR SINE MIR 41 139 -123 557 388 33 8 chr6 168676430 168676670 -20602884 + MIR SINE MIR 6 251 -11 815 152 7 22 chr6 168676921 168677059 -20602495 - AluJo SINE Alu -176 136 1 29 0 0 0 chr6 168677059 168677088 -20602466 + AT_rich Low_complexity Low_complexity 1 29 0 2273 97 0 3 chr6 168678098 168678397 -20601157 - AluSc SINE Alu -11 298 1 208 289 36 48 chr6 168678944 168679027 -20600527 + MIR3 SINE MIR 89 170 -38 377 318 46 28 chr6 168679308 168679525 -20600029 + MIR SINE MIR 32 252 -10 31 0 0 0 chr6 168680138 168680169 -20599385 + AT_rich Low_complexity Low_complexity 1 31 0 1792 174 3 3 chr6 168680199 168680486 -20599068 + AluJo SINE Alu 6 292 -20 404 255 10 0 chr6 168680565 168680667 -20598887 - L1ME3A LINE L1 -5 6165 6063 22 70 0 0 chr6 168680677 168680720 -20598834 + AT_rich Low_complexity Low_complexity 1 43 0 2366 63 0 0 chr6 168680808 168681094 -20598460 - AluY SINE Alu -25 286 1 985 164 188 8 chr6 168682174 168682430 -20597124 - L1MA9 LINE L1 -10 6302 6001 22 0 0 0 chr6 168682662 168682684 -20596870 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 168683639 168683659 -20595895 + (T)n Simple_repeat Simple_repeat 1 20 0 447 329 58 12 chr6 168684441 168684681 -20594873 - MIR SINE MIR -2 260 10 1792 156 14 3 chr6 168686090 168686401 -20593153 + AluJo SINE Alu 1 314 0 2800 77 3 13 chr6 168687534 168687911 -20591643 + THE1C LTR MaLR 3 375 0 196 294 29 78 chr6 168688961 168688999 -20590555 - MIR SINE MIR -65 197 159 2163 119 6 6 chr6 168688999 168689311 -20590243 - AluSx SINE Alu 0 312 1 196 294 29 78 chr6 168689311 168689374 -20590180 - MIR SINE MIR -103 159 101 187 322 0 46 chr6 168689419 168689506 -20590048 - MIR SINE MIR -62 200 118 180 111 0 0 chr6 168689532 168689559 -20589995 + (A)n Simple_repeat Simple_repeat 1 27 0 214 323 32 43 chr6 168690577 168690670 -20588884 + L2 LINE L2 3116 3207 -65 296 326 0 0 chr6 168691691 168691783 -20587771 + (CA)n Simple_repeat Simple_repeat 1 92 0 1341 214 13 22 chr6 168691818 168692131 -20587423 + MLT1A2 LTR MaLR 65 374 0 21 36 0 0 chr6 168695227 168695255 -20584299 + AT_rich Low_complexity Low_complexity 1 28 0 204 40 0 0 chr6 168695260 168695285 -20584269 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 240 188 52 10 chr6 168695437 168695533 -20584021 + (TA)n Simple_repeat Simple_repeat 2 101 0 2312 90 3 10 chr6 168698330 168698640 -20580914 - AluSg SINE Alu -2 308 1 215 278 19 0 chr6 168698796 168698850 -20580704 + CT-rich Low_complexity Low_complexity 3 57 0 21 57 0 0 chr6 168699549 168699584 -20579970 + AT_rich Low_complexity Low_complexity 1 35 0 391 295 13 13 chr6 168699820 168699976 -20579578 - L1ME4a LINE L1 -227 5894 5739 1833 266 108 12 chr6 168750207 168750790 -20528764 + L2 LINE L2 1393 2044 -1270 1510 143 16 37 chr6 168750790 168751035 -20528519 + AluJo SINE Alu 6 245 -67 1833 266 108 12 chr6 168751035 168751090 -20528464 + L2 LINE L2 2044 2092 -1222 645 228 180 40 chr6 168751082 168751332 -20528222 - L2 LINE L2 -4 3309 3025 * 586 290 30 71 chr6 168751331 168751696 -20527858 + L2 LINE L2 2902 3251 -62 * 335 299 16 16 chr6 168751696 168751823 -20527731 - L1M4 LINE L1 -2686 3460 3334 1831 176 16 0 chr6 168751953 168752260 -20527294 - AluJb SINE Alu 0 312 1 780 280 132 3 chr6 168752301 168752597 -20526957 - L2 LINE L2 -626 2688 2355 241 243 257 0 chr6 168753314 168753388 -20526166 + MIR SINE MIR 32 124 -84 1758 176 3 35 chr6 168754376 168754695 -20524859 - AluJo SINE Alu -3 309 1 898 231 5 0 chr6 168756431 168756634 -20522920 + MLT1B LTR MaLR 187 390 0 2285 125 0 0 chr6 168756664 168756976 -20522578 + AluSx SINE Alu 1 312 0 280 304 40 53 chr6 168757206 168757433 -20522121 + MER102b DNA MER1_type 118 341 0 1590 171 80 7 chr6 168758302 168758470 -20521084 - AluJb SINE Alu -5 307 108 207 0 0 0 chr6 168758470 168758493 -20521061 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1590 171 80 7 chr6 168758493 168758610 -20520944 - AluJb SINE Alu -204 108 1 1332 271 178 9 chr6 168758851 168759386 -20520168 - L2 LINE L2 -2132 1182 558 573 228 99 12 chr6 168759544 168759715 -20519839 + MIR SINE MIR 73 258 -4 1937 143 0 7 chr6 168760260 168760546 -20519008 + AluSx SINE Alu 1 284 -28 186 288 64 56 chr6 168761263 168761388 -20518166 + L2 LINE L2 3188 3313 0 371 239 0 46 chr6 168761481 168761590 -20517964 + L1PB4 LINE L1 6053 6156 0 409 231 4 10 chr6 168762530 168762678 -20516876 - HERVH LTR ERV1 -7267 446 352 1466 186 124 17 chr6 168762687 168763090 -20516464 - HERVH LTR ERV1 -7267 446 1 1743 153 140 32 chr6 168763090 168763496 -20516058 - LTR7 LTR ERV1 0 450 1 1101 160 35 0 chr6 168763508 168763708 -20515846 + MER2 DNA MER2_type 2 208 -137 894 211 28 6 chr6 168763872 168764052 -20515502 + MER5A DNA MER1_type 6 189 0 250 325 106 26 chr6 168764069 168764220 -20515334 - L2 LINE L2 -200 3072 2910 256 258 4 50 chr6 168764383 168764484 -20515070 - MIR SINE MIR -113 95 2 252 380 37 9 chr6 168764744 168764852 -20514702 - L2 LINE L2 0 3272 3162 2433 81 0 0 chr6 168765745 168766041 -20513513 - AluY SINE Alu -15 296 1 3096 75 39 0 chr6 168766348 168766786 -20512768 + L1PA11 LINE L1 5717 6171 -3 2185 110 0 31 chr6 168767600 168767919 -20511635 - AluSc SINE Alu 0 309 1 2127 151 3 15 chr6 168768078 168768469 -20511085 - L1MB3 LINE L1 -238 5945 5560 1035 241 13 0 chr6 168769834 168770066 -20509488 + L2 LINE L2 2452 2686 -628 457 258 7 66 chr6 168770075 168770226 -20509328 + L2 LINE L2 3172 3313 0 1955 147 3 0 chr6 168770246 168770532 -20509022 + AluSx SINE Alu 1 287 -25 396 103 0 0 chr6 168770532 168770590 -20508964 + (TGAA)n Simple_repeat Simple_repeat 3 60 0 763 121 43 14 chr6 168770824 168770964 -20508590 - L1MA9 LINE L1 0 6312 6169 1003 215 0 19 chr6 168771340 168771549 -20508005 + MLT1B LTR MaLR 1 205 -185 540 170 20 0 chr6 168771581 168771681 -20507873 + MLT1B LTR MaLR 364 465 -2 617 64 35 41 chr6 168772688 168772859 -20506695 + (TA)n Simple_repeat Simple_repeat 2 171 0 304 332 136 10 chr6 168773003 168773202 -20506352 + L2 LINE L2 2346 2569 -745 23 78 0 0 chr6 168773803 168773854 -20505700 + AT_rich Low_complexity Low_complexity 1 51 0 791 32 0 0 chr6 168774057 168774152 -20505402 - L1P LINE L1 -1912 4234 4140 390 286 62 28 chr6 168774516 168774694 -20504860 + L1MC/D LINE L1 5585 5768 -2040 199 309 105 66 chr6 168775207 168775359 -20504195 + L2 LINE L2 3108 3265 -7 1753 263 50 29 chr6 168777010 168777591 -20501963 + MLT1E LTR MaLR 1 593 0 1420 189 0 55 chr6 168777644 168777952 -20501602 - L1 LINE L1 -1527 4619 4330 2394 91 0 0 chr6 168777952 168778260 -20501294 + AluY SINE Alu 1 308 -3 1420 189 0 55 chr6 168778260 168778295 -20501259 - L1 LINE L1 -1816 4330 4295 906 140 13 0 chr6 168778295 168778451 -20501103 + L1PA16 LINE L1 6005 6163 -3 197 256 0 0 chr6 168778674 168778717 -20500837 + L2 LINE L2 3183 3225 -88 242 238 205 26 chr6 168778956 168779107 -20500447 - MIR SINE MIR -5 257 80 1618 162 3 111 chr6 168780112 168780501 -20499053 + MER7A DNA MER2_type 1 345 -1 1990 144 0 0 chr6 168781785 168782070 -20497484 + AluSx SINE Alu 3 287 -25 712 248 60 66 chr6 168782786 168783088 -20496466 + MLT1H LTR MaLR 1 300 -249 222 37 0 0 chr6 168783442 168783469 -20496085 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 352 250 137 36 chr6 168783471 168783721 -20495833 + MLT1H1 LTR MaLR 256 555 0 242 286 22 11 chr6 168783721 168783812 -20495742 + MLT1H-int LTR MaLR 1 92 -1643 226 348 0 22 chr6 168783939 168784031 -20495523 + MLT1H-int LTR MaLR 419 508 -1227 968 194 0 5 chr6 168784205 168784391 -20495163 - L1MA9 LINE L1 -362 5950 5766 714 143 40 0 chr6 168784396 168784522 -20495032 + L1MA9 LINE L1 6182 6312 0 355 290 92 92 chr6 168784875 168785213 -20494341 + MLT1H-int LTR MaLR 1033 1370 -1 619 276 86 35 chr6 168785222 168785606 -20493948 + MLT1H LTR MaLR 22 382 -160 343 207 23 23 chr6 168785823 168785910 -20493644 + MLT1H LTR MaLR 452 538 -4 181 224 17 52 chr6 168786030 168786088 -20493466 - L3 LINE CR1 -897 680 625 672 235 15 0 chr6 168786461 168786597 -20492957 - MER20 DNA MER1_type -4 215 78 27 29 0 0 chr6 168786857 168786891 -20492663 + AT_rich Low_complexity Low_complexity 1 34 0 1154 234 4 15 chr6 168787105 168787379 -20492175 + MER46C DNA MER2_type 62 332 -6 181 347 31 10 chr6 168787912 168788010 -20491544 - L2 LINE L2 0 3272 3173 7707 208 53 68 chr6 168788272 168789115 -20490439 + L1MC4a LINE L1 5550 6404 -1404 2475 146 26 5 chr6 168789115 168789534 -20490020 + MSTA LTR MaLR 1 428 0 7707 208 53 68 chr6 168789534 168789807 -20489747 + L1MC4a LINE L1 6404 6680 -1128 1769 40 0 13 chr6 168789807 168790033 -20489521 + L1PA4 LINE L1 5932 6154 -1 7707 208 53 68 chr6 168790033 168791208 -20488346 + L1MC4a LINE L1 6680 7807 -1 834 294 86 26 chr6 168791987 168792933 -20486621 - L1ME3A LINE L1 -226 5944 4940 7568 158 22 6 chr6 168792961 168795248 -20484306 - L1PB3 LINE L1 0 6154 3833 974 268 48 74 chr6 168795486 168795989 -20483565 - LTR16C LTR ERVL 0 491 2 211 114 29 0 chr6 168797091 168797126 -20482428 + CT-rich Low_complexity Low_complexity 1 36 0 207 88 0 0 chr6 168799176 168799210 -20480344 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 274 333 75 25 chr6 168799858 168800017 -20479537 + MIR SINE MIR 96 262 0 11991 144 28 34 chr6 168800454 168802747 -20476807 + HERVH LTR ERV1 2470 4842 -2871 452 183 0 0 chr6 168802722 168802804 -20476750 + HERVH LTR ERV1 6646 6727 -986 * 2001 180 108 47 chr6 168802804 168803320 -20476234 + LTR10A LTR ERV1 1 548 -61 1451 111 37 0 chr6 168803333 168803550 -20476004 + HERVH LTR ERV1 6724 6948 -765 306 95 16 79 chr6 168803536 168803599 -20475955 + HERVH LTR ERV1 7655 7713 0 * 3322 103 58 10 chr6 168803600 168804116 -20475438 + HERVH LTR ERV1 7173 7713 0 1862 172 105 29 chr6 168804116 168804534 -20475020 + LTR7 LTR ERV1 1 450 0 249 274 16 0 chr6 168804553 168804615 -20474939 + L2 LINE L2 3204 3266 -6 186 118 0 0 chr6 168805311 168805345 -20474209 + (CA)n Simple_repeat Simple_repeat 1 34 0 204 365 12 0 chr6 168805586 168805671 -20473883 - L2 LINE L2 -3 3310 3225 2453 63 0 7 chr6 168808034 168808337 -20471217 + AluY SINE Alu 3 303 -8 401 251 117 34 chr6 168808699 168808817 -20470737 + L1ME4a LINE L1 5535 5674 -447 1960 144 3 3 chr6 168808817 168809123 -20470431 + AluSx SINE Alu 1 306 -6 401 251 117 34 chr6 168809123 168809183 -20470371 + L1ME4a LINE L1 5674 5728 -393 374 287 91 52 chr6 168809249 168809479 -20470075 + L1ME4a LINE L1 5865 6103 -18 372 183 0 0 chr6 168811793 168811864 -20467690 + L1MA4 LINE L1 5942 6012 -288 318 27 0 0 chr6 168813043 168813080 -20466474 - tRNA-Tyr-TAC tRNA tRNA -39 37 1 432 262 130 65 chr6 168813445 168813769 -20465785 - MARNA DNA Mariner -219 367 23 999 154 0 25 chr6 168813887 168814083 -20465471 - AluSg/x SINE Alu 0 315 124 729 132 0 0 chr6 168814135 168814241 -20465313 - AluSq/x SINE Alu -207 106 1 186 43 0 0 chr6 168814832 168814855 -20464699 + (CA)n Simple_repeat Simple_repeat 1 23 0 2273 104 0 19 chr6 168816603 168816921 -20462633 - AluSx SINE Alu 0 312 1 744 251 44 11 chr6 168820329 168820512 -20459042 + MER5A DNA MER1_type 1 189 0 605 134 83 70 chr6 168820593 168820719 -20458835 + MLT1B LTR MaLR 15 145 -245 1888 132 46 0 chr6 168820719 168820999 -20458555 - AluSx SINE Alu -19 293 1 605 134 83 70 chr6 168820999 168821029 -20458525 + MLT1B LTR MaLR 145 173 -217 6622 50 5 0 chr6 168821031 168821928 -20457626 + L1PA7 LINE L1 5178 6078 -76 197 151 19 0 chr6 168822848 168822901 -20456653 + (TA)n Simple_repeat Simple_repeat 2 55 0 434 335 54 27 chr6 168823468 168823692 -20455862 - MIR SINE MIR -30 232 3 446 285 40 30 chr6 168824179 168824533 -20455021 - LTR16A LTR ERVL 0 450 60 2056 159 15 3 chr6 168825680 168826020 -20453534 + MER7A DNA MER2_type 5 346 0 12672 208 47 41 chr6 168826515 168829391 -20450163 + L1M2 LINE L1 1 2857 -4394 431 18 18 0 chr6 168829391 168829447 -20450107 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 227 179 179 0 chr6 168829450 168829506 -20450048 - AluJ/FRAM SINE Alu -20 282 217 12672 208 47 41 chr6 168829506 168829561 -20449993 + L1M2 LINE L1 2858 2911 -4340 1478 159 34 26 chr6 168829561 168829825 -20449729 - AluJo SINE Alu -46 266 1 12672 208 47 41 chr6 168829825 168830494 -20449060 + L1M2 LINE L1 2911 3574 -3677 2057 133 0 40 chr6 168830494 168830818 -20448736 + AluSx SINE Alu 1 311 -1 12672 208 47 41 chr6 168830818 168833092 -20446462 + L1M2 LINE L1 3574 6730 -521 1122 31 0 0 chr6 168833092 168833222 -20446332 + L1PA7 LINE L1 6010 6139 -15 225 0 0 0 chr6 168833476 168833501 -20446053 + (CA)n Simple_repeat Simple_repeat 2 26 0 445 100 82 73 chr6 168833937 168834047 -20445507 + L1MA9 LINE L1 6202 6312 0 1913 145 3 0 chr6 168834756 168835038 -20444516 - AluJb SINE Alu -27 285 3 442 320 25 66 chr6 168835180 168835424 -20444130 + MIR SINE MIR 26 259 -3 197 250 0 0 chr6 168836338 168836382 -20443172 - L2 LINE L2 -8 3264 3221 1096 190 86 10 chr6 168837311 168837408 -20442146 - L1MA9 LINE L1 -38 6274 6186 336 48 0 0 chr6 168837408 168837450 -20442104 + (TG)n Simple_repeat Simple_repeat 1 42 0 1096 190 86 10 chr6 168837450 168837713 -20441841 - L1MA9 LINE L1 -126 6186 5748 1953 157 0 19 chr6 168838696 168839014 -20440540 - AluSx SINE Alu 0 312 1 791 201 26 0 chr6 168839029 168839183 -20440371 - FAM SINE Alu -17 158 1 725 177 152 0 chr6 168839488 168839652 -20439902 + MER5A DNA MER1_type 1 189 0 531 246 42 14 chr6 168839733 168839875 -20439679 + MIR SINE MIR 88 233 -29 187 227 121 0 chr6 168842942 168843008 -20436546 - MIR SINE MIR -67 141 68 2496 20 3 0 chr6 168843596 168843890 -20435664 - L1PA4 LINE L1 -3 6152 5858 311 224 0 0 chr6 168844567 168844634 -20434920 - L1MC4 LINE L1 -1339 6703 6637 21 0 0 0 chr6 168844697 168844718 -20434836 + AT_rich Low_complexity Low_complexity 1 21 0 237 191 16 16 chr6 168845288 168845351 -20434203 + T-rich Low_complexity Low_complexity 6 68 0 303 379 71 18 chr6 168845728 168845897 -20433657 + MER5A DNA MER1_type 10 187 -2 750 280 56 22 chr6 168846045 168846277 -20433277 + MIR SINE MIR 23 262 0 2196 80 10 3 chr6 168847764 168848064 -20431490 + AluY SINE Alu 3 304 -7 485 209 8 30 chr6 168848576 168848710 -20430844 - L1MD2 LINE L1 -12 6347 6217 2132 138 3 0 chr6 168848721 168849032 -20430522 + AluSx SINE Alu 1 312 0 1579 236 87 70 chr6 168849504 168849918 -20429636 + MLT1G1 LTR MaLR 1 429 -166 5838 124 19 0 chr6 168849918 168851143 -20428411 - L1PA15 LINE L1 0 6165 4927 1579 236 87 70 chr6 168851143 168851313 -20428241 + MLT1G1 LTR MaLR 429 595 0 325 341 22 14 chr6 168852110 168852248 -20427306 + MER5A DNA MER1_type 29 167 -22 193 116 23 23 chr6 168852884 168852927 -20426627 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 26 0 0 0 chr6 168852970 168852996 -20426558 + AT_rich Low_complexity Low_complexity 1 26 0 719 253 21 5 chr6 168853001 168853187 -20426367 - L1PB4 LINE L1 -3 6153 5965 272 234 168 37 chr6 168853779 168853886 -20425668 + MIR SINE MIR 65 185 -77 756 243 49 36 chr6 168854413 168854660 -20424894 + MIR SINE MIR 2 251 -11 249 83 0 0 chr6 168854661 168854697 -20424857 + (GA)n Simple_repeat Simple_repeat 1 36 0 1276 165 161 4 chr6 168854852 168855112 -20424442 - AluJo SINE Alu -1 301 1 434 298 63 28 chr6 168855246 168855358 -20424196 - L1MC4a LINE L1 -1966 5842 5735 2775 98 0 8 chr6 168855358 168855736 -20423818 + THE1C LTR MaLR 1 375 0 434 298 63 28 chr6 168855736 168855878 -20423676 - L1MC4a LINE L1 -2073 5735 5579 205 138 17 17 chr6 168856304 168856362 -20423192 + (TG)n Simple_repeat Simple_repeat 1 58 0 276 30 0 0 chr6 168857062 168857095 -20422459 + (CA)n Simple_repeat Simple_repeat 1 33 0 23 33 0 0 chr6 168857196 168857226 -20422328 + AT_rich Low_complexity Low_complexity 1 30 0 298 255 59 0 chr6 168857754 168857856 -20421698 - L1ME LINE L1 -309 5812 5705 1348 152 172 8 chr6 168859362 168859618 -20419936 - AluSg SINE Alu -2 298 1 23 33 0 0 chr6 168859768 168859798 -20419756 + AT_rich Low_complexity Low_complexity 1 30 0 1460 163 116 11 chr6 168860338 168860511 -20419043 - AluJo SINE Alu -6 306 92 243 0 0 0 chr6 168860511 168860538 -20419016 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1460 163 116 11 chr6 168860538 168860641 -20418913 - AluJo SINE Alu -220 92 1 26 64 0 0 chr6 168860870 168860917 -20418637 + AT_rich Low_complexity Low_complexity 1 47 0 1889 201 0 2 chr6 168861236 168861629 -20417925 - L1PA16 LINE L1 -1433 4713 4322 5236 117 15 60 chr6 168861629 168863137 -20416417 + L1PA16 LINE L1 4699 6163 -3 2057 172 86 18 chr6 168863263 168863659 -20415895 + MER6 DNA MER2_type 179 861 -4 2068 97 17 7 chr6 168863713 168864002 -20415552 + AluY SINE Alu 1 292 -19 382 325 63 31 chr6 168864091 168864282 -20415272 + MIR SINE MIR 19 215 -47 298 345 108 22 chr6 168864637 168864869 -20414685 + L3 LINE CR1 1164 1415 -162 522 274 34 11 chr6 168865063 168865238 -20414316 + L2 LINE L2 1700 1878 -1436 830 307 85 29 chr6 168865240 168865722 -20413832 + L2 LINE L2 1811 2319 -995 341 293 75 0 chr6 168865798 168865931 -20413623 + L2 LINE L2 2930 3072 -241 281 233 23 12 chr6 168866216 168866302 -20413252 + MIR3 SINE MIR 122 208 0 261 0 0 0 chr6 168866511 168866540 -20413014 + (A)n Simple_repeat Simple_repeat 1 29 0 1897 123 53 13 chr6 168866668 168866968 -20412586 - AluSx SINE Alu 0 312 1 1421 177 0 37 chr6 168867693 168867964 -20411590 - AluJb SINE Alu -16 296 36 2522 98 28 14 chr6 168868508 168868867 -20410687 + THE1B LTR MaLR 1 364 0 1655 177 33 111 chr6 168872553 168872976 -20406578 + MLT1B LTR MaLR 1 390 0 224 227 45 0 chr6 168873212 168873278 -20406276 + GA-rich Low_complexity Low_complexity 4 72 0 202 167 33 0 chr6 168874109 168874169 -20405385 + (TA)n Simple_repeat Simple_repeat 2 63 0 24 32 0 0 chr6 168874212 168874243 -20405311 + AT_rich Low_complexity Low_complexity 1 31 0 29616 69 10 3 chr6 168874353 168878992 -20400562 + L1PA6 LINE L1 1484 6154 0 21 0 0 0 chr6 168879190 168879211 -20400343 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 168879530 168879559 -20399995 + AT_rich Low_complexity Low_complexity 1 29 0 1913 162 3 10 chr6 168880154 168880463 -20399091 + AluJo SINE Alu 1 307 -5 412 252 42 25 chr6 168880674 168880793 -20398761 + MER45 DNA AcHobo 1 121 -1460 226 329 24 0 chr6 168880974 168881056 -20398498 + MIR3 SINE MIR 100 183 -25 242 296 120 16 chr6 168881279 168881404 -20398150 + L2 LINE L2 3176 3313 0 308 336 31 87 chr6 168881465 168881694 -20397860 - L2 LINE L2 -50 3222 3007 235 109 0 36 chr6 168882203 168882258 -20397296 + (CAA)n Simple_repeat Simple_repeat 2 54 0 270 0 0 0 chr6 168882911 168882941 -20396613 + (CA)n Simple_repeat Simple_repeat 1 30 0 1404 274 128 8 chr6 168884000 168884623 -20394931 + L2 LINE L2 1958 2655 -659 25 31 0 0 chr6 168884623 168884655 -20394899 + AT_rich Low_complexity Low_complexity 1 32 0 265 320 109 46 chr6 168884655 168884939 -20394615 - L2 LINE L2 -4 3309 3008 5504 95 17 1 chr6 168886133 168886902 -20392652 - L1PA13 LINE L1 -4 6159 5379 3749 146 18 35 chr6 168886904 168887656 -20391898 + L1P LINE L1 4678 5419 -735 278 196 18 0 chr6 168889060 168889116 -20390438 - 7SK RNA RNA -5 188 132 221 299 34 60 chr6 168889752 168889869 -20389685 - MIR SINE MIR -65 197 84 187 333 25 33 chr6 168890199 168890319 -20389235 - MIR SINE MIR -64 198 80 2056 108 3 24 chr6 168891230 168891526 -20388028 + AluSx SINE Alu 1 290 -22 306 168 0 28 chr6 168892028 168892135 -20387419 + (TA)n Simple_repeat Simple_repeat 2 105 0 267 176 66 77 chr6 168892135 168892226 -20387328 - L1MC4 LINE L1 -1339 6703 6614 211 82 0 82 chr6 168892242 168892291 -20387263 + (TATG)n Simple_repeat Simple_repeat 4 48 0 309 51 0 0 chr6 168892373 168892412 -20387142 + (TG)n Simple_repeat Simple_repeat 2 40 0 1894 177 0 3 chr6 168892512 168892812 -20386742 - AluJb SINE Alu -9 303 5 1639 166 35 42 chr6 168892870 168893183 -20386371 + AluJb SINE Alu 1 311 -1 309 77 0 0 chr6 168893183 168893222 -20386332 + (GA)n Simple_repeat Simple_repeat 1 39 0 665 106 10 0 chr6 168893222 168893326 -20386228 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 2240 49 11 24 chr6 168894823 168895134 -20384420 - AluY SINE Alu 0 308 2 2396 93 0 0 chr6 168895155 168895465 -20384089 - AluY SINE Alu -1 310 1 5363 98 12 0 chr6 168895626 168896353 -20383201 + L1PA8A LINE L1 5396 6131 0 265 320 46 85 chr6 168896723 168896834 -20382720 + MIR3 SINE MIR 35 140 -68 2075 133 3 0 chr6 168896834 168897134 -20382420 + AluSc SINE Alu 1 301 -8 265 320 46 85 chr6 168897134 168897175 -20382379 + MIR3 SINE MIR 140 181 -27 30007 104 6 10 chr6 168897182 168901497 -20378057 + L1P LINE L1 11 4307 -1839 475 339 67 47 chr6 168903036 168903662 -20375892 - L2 LINE L2 -39 3233 2596 254 333 15 0 chr6 168904574 168904640 -20374914 + MIR SINE MIR 31 97 -111 267 364 36 29 chr6 168904682 168904822 -20374732 + MIR SINE MIR 6 146 -62 22 35 0 0 chr6 168904858 168904887 -20374667 + AT_rich Low_complexity Low_complexity 1 29 0 339 239 119 30 chr6 168905414 168905548 -20374006 - L2 LINE L2 0 3313 3168 27 0 0 0 chr6 168906525 168906552 -20373002 + AT_rich Low_complexity Low_complexity 1 27 0 274 211 14 14 chr6 168908655 168908726 -20370828 + CT-rich Low_complexity Low_complexity 1 71 0 31 0 0 0 chr6 168908916 168908947 -20370607 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 168909181 168909202 -20370352 + GC_rich Low_complexity Low_complexity 1 21 0 2144 110 4 0 chr6 168910647 168910948 -20368606 - AluSp SINE Alu 0 302 1 759 325 73 52 chr6 168911253 168911482 -20368072 - L2 LINE L2 -1 3312 3089 2116 107 17 7 chr6 168911482 168911617 -20367937 + AluSx SINE Alu 1 133 -179 2173 106 7 3 chr6 168911617 168911910 -20367644 + AluSc SINE Alu 1 294 -15 2116 107 17 7 chr6 168911910 168912065 -20367489 + AluSx SINE Alu 133 294 -18 759 325 73 52 chr6 168912065 168912626 -20366928 - L2 LINE L2 -224 3089 2512 769 193 36 36 chr6 168912643 168912835 -20366719 + MLT1A1 LTR MaLR 2 193 -172 587 296 38 19 chr6 168912950 168913163 -20366391 + MIR SINE MIR 46 262 0 2403 99 0 6 chr6 168913606 168913920 -20365634 - AluSq SINE Alu -1 312 1 1850 170 10 16 chr6 168915502 168915814 -20363740 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr6 168915944 168915966 -20363588 + AT_rich Low_complexity Low_complexity 1 22 0 1569 190 3 11 chr6 168916072 168916356 -20363198 - AluJo SINE Alu -29 283 2 250 250 36 121 chr6 168916412 168916552 -20363002 - MER91B DNA MER1_type -60 130 3 4270 272 87 13 chr6 168916560 168918036 -20361518 + L2 LINE L2 955 2540 -774 802 224 14 49 chr6 168918036 168918259 -20361295 + L1MC4 LINE L1 7805 8019 -23 1077 281 57 47 chr6 168918295 168918349 -20361205 + L2 LINE L2 2595 2647 -666 2258 110 0 3 chr6 168918349 168918659 -20360895 - AluSg1 SINE Alu 0 309 1 1077 281 57 47 chr6 168918659 168919318 -20360236 + L2 LINE L2 2647 3313 0 352 298 91 50 chr6 168920206 168920603 -20358951 - MLT1K LTR MaLR 0 615 170 545 326 101 19 chr6 168920778 168921155 -20358399 - LTR33 LTR ERVL -69 452 45 432 0 0 0 chr6 168921378 168921426 -20358128 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 237 368 52 7 chr6 168921587 168921742 -20357812 + L3b LINE CR1 1256 1417 -166 1417 292 89 26 chr6 168922122 168922211 -20357343 - L2 LINE L2 0 3313 3231 213 39 0 0 chr6 168922211 168922237 -20357317 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 1417 292 89 26 chr6 168922237 168922949 -20356605 - L2 LINE L2 -82 3231 2459 1764 167 41 39 chr6 168924003 168924392 -20355162 - MLT1B LTR MaLR 0 390 1 1015 123 0 0 chr6 168924943 168925081 -20354473 - AluJb SINE Alu -174 138 1 1956 100 68 4 chr6 168925159 168925438 -20354116 - AluSq SINE Alu -14 299 3 3448 132 41 2 chr6 168925441 168926002 -20353552 - Tigger1 DNA MER2_type -9 2409 1827 2335 64 0 7 chr6 168926003 168926314 -20353240 - AluY SINE Alu 0 310 2 2364 94 0 0 chr6 168926335 168926644 -20352910 - AluY SINE Alu -2 309 1 5194 94 13 1 chr6 168926805 168927554 -20352000 + L1PA10 LINE L1 5396 6168 0 7028 53 8 11 chr6 168927857 168929113 -20350441 + L1PA8 LINE L1 4802 6056 -116 2280 100 3 0 chr6 168929113 168929412 -20350142 + AluSg SINE Alu 1 300 -10 7028 53 8 11 chr6 168929412 168929529 -20350025 + L1PA8 LINE L1 6056 6172 0 5192 172 24 13 chr6 168929627 168930611 -20348943 + L1MA7 LINE L1 5292 6286 -5 862 300 63 32 chr6 168930629 168930736 -20348818 - HERVL LTR ERVL -1090 4564 4462 2043 167 28 3 chr6 168930736 168931090 -20348464 - MLT1A1 LTR MaLR 0 365 3 862 300 63 32 chr6 168931090 168931536 -20348018 - HERVL LTR ERVL -1192 4462 4002 300 188 0 0 chr6 168931574 168931643 -20347911 + (TA)n Simple_repeat Simple_repeat 1 69 0 726 294 77 27 chr6 168931659 168932197 -20347357 - HERVL LTR ERVL -1716 3938 3398 1904 206 58 25 chr6 168932200 168932647 -20346907 - MLT1C LTR MaLR 0 467 6 944 310 69 40 chr6 168932660 168932728 -20346826 - HERVL LTR ERVL -2302 3352 3287 1865 146 3 7 chr6 168932728 168933023 -20346531 + AluSx SINE Alu 1 294 -18 944 310 69 40 chr6 168933023 168933432 -20346122 - HERVL LTR ERVL -2367 3287 2861 210 71 0 0 chr6 168934235 168934263 -20345291 + (CA)n Simple_repeat Simple_repeat 1 28 0 438 274 109 43 chr6 168934472 168934865 -20344689 - L1MC5 LINE L1 -30 7996 7603 240 108 0 0 chr6 168934952 168934989 -20344565 - MLT2C1 LTR ERVL -1 396 360 640 186 168 6 chr6 168935061 168935228 -20344326 + MER33 DNA MER1_type 6 199 -125 263 242 0 61 chr6 168935309 168935441 -20344113 - L1MEc LINE L1 -3981 2599 2436 23 33 0 0 chr6 168935725 168935755 -20343799 + AT_rich Low_complexity Low_complexity 1 30 0 840 287 141 6 chr6 168935765 168936099 -20343455 + MLT1J2 LTR MaLR 2 380 -70 1235 185 143 36 chr6 168936170 168936499 -20343055 + THE1B LTR MaLR 1 364 0 588 220 78 80 chr6 168936503 168936787 -20342767 + MLT1D LTR MaLR 1 273 -194 1092 317 92 29 chr6 168937237 168938080 -20341474 + ERVL LTR ERVL 1359 2307 -3457 1410 214 57 11 chr6 168938155 168938410 -20341144 + LTR50 LTR ERVL 429 671 -124 1513 224 70 23 chr6 168938410 168938807 -20340747 + LTR52 LTR ERVL 4 419 -2 1410 214 57 11 chr6 168938807 168938822 -20340732 + LTR50 LTR ERVL 671 684 -111 2521 55 0 16 chr6 168938822 168939131 -20340423 - AluY SINE Alu -5 306 3 1410 214 57 11 chr6 168939131 168939210 -20340344 + LTR50 LTR ERVL 684 795 0 505 349 43 33 chr6 168939219 168939666 -20339888 - L1MEc LINE L1 -3597 2618 2206 1655 224 21 2 chr6 168939691 168940120 -20339434 - L1 LINE L1 -3012 4553 4117 1125 267 102 32 chr6 168940123 168940818 -20338736 - L1 LINE L1 -3857 3708 2964 189 0 0 0 chr6 168940846 168940867 -20338687 + (T)n Simple_repeat Simple_repeat 1 21 0 2590 209 34 28 chr6 168940884 168941490 -20338064 - L1 LINE L1 -4459 3107 2511 1889 170 0 3 chr6 168941490 168941790 -20337764 + AluJb SINE Alu 1 299 -13 2590 209 34 28 chr6 168941790 168942035 -20337519 - L1 LINE L1 -5055 2511 2269 632 341 36 51 chr6 168942218 168942629 -20336925 - L1 LINE L1 -6759 807 403 24 32 0 0 chr6 168942793 168942824 -20336730 + AT_rich Low_complexity Low_complexity 1 31 0 210 376 30 0 chr6 168944593 168944694 -20334860 + L2 LINE L2 3199 3302 -11 495 346 75 9 chr6 168945857 168946085 -20333469 - MIR SINE MIR 0 262 20 652 216 62 72 chr6 168946223 168946431 -20333123 + MER3 DNA MER1_type 1 206 -3 259 122 265 0 chr6 168946911 168946960 -20332594 - Tigger5 DNA MER2_type 0 2323 2262 2486 49 0 10 chr6 168946961 168947268 -20332286 + AluY SINE Alu 1 304 -7 258 358 28 9 chr6 168948617 168948726 -20330828 - MIR SINE MIR -44 218 108 4624 61 2 0 chr6 168948932 168949518 -20330036 - L1PA7 LINE L1 -4 6150 5564 8800 83 30 0 chr6 168949518 168950970 -20328584 + L1M1 LINE L1 4121 5612 -599 183 350 12 0 chr6 168951669 168951749 -20327805 - MIR SINE MIR -56 206 126 232 217 14 14 chr6 168951917 168951986 -20327568 + GA-rich Low_complexity Low_complexity 4 72 0 3410 179 10 38 chr6 168952337 168953040 -20326514 - L1MD2 LINE L1 0 6359 5677 1883 256 26 42 chr6 168953040 168953763 -20325791 - L1MD2 LINE L1 -901 5245 4534 536 348 109 42 chr6 168953765 168954424 -20325130 + L2 LINE L2 1988 2690 -624 189 0 0 0 chr6 168954424 168954445 -20325109 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 266 193 36 12 chr6 168954538 168954621 -20324933 + L1MEd LINE L1 162 246 -5959 1855 152 0 0 chr6 168954776 168955052 -20324502 + AluSx SINE Alu 1 276 -36 798 144 15 24 chr6 168955072 168955488 -20324066 + GA-rich Low_complexity Low_complexity 1 412 0 920 271 87 50 chr6 168955523 168956084 -20323470 + L1MEd LINE L1 390 971 -5234 4212 65 9 0 chr6 168956402 168956955 -20322599 + LTR6B LTR ERV1 1 558 0 3066 73 18 22 chr6 168957243 168957693 -20321861 + LTR7 LTR ERV1 1 448 -2 23 116 0 0 chr6 168957897 168958018 -20321536 + AT_rich Low_complexity Low_complexity 1 121 0 1665 168 3 18 chr6 168958299 168958585 -20320969 + AluJo SINE Alu 1 282 -30 2447 70 0 0 chr6 168958587 168958887 -20320667 - AluY SINE Alu -11 300 1 22 70 0 0 chr6 168959316 168959359 -20320195 + AT_rich Low_complexity Low_complexity 1 43 0 656 159 39 99 chr6 168959658 168959746 -20319808 + MSTC LTR MaLR 1 93 -303 2366 47 40 13 chr6 168959746 168960045 -20319509 + AluY SINE Alu 3 309 -2 656 159 39 99 chr6 168960045 168960162 -20319392 + MSTC LTR MaLR 93 245 -151 718 160 39 39 chr6 168960384 168960540 -20319014 - LTR1B LTR ERV1 -328 498 343 367 247 159 17 chr6 168960562 168960716 -20318838 - LTR1 LTR ERV1 -564 221 58 603 228 28 14 chr6 168960752 168960897 -20318657 + MSTC LTR MaLR 243 389 -7 1743 48 4 0 chr6 168961061 168961288 -20318266 + L1P LINE L1 1 228 -5918 * 23728 18 0 0 chr6 168961287 168964857 -20314697 + L1HS LINE L1 2584 6153 -2 359 309 108 3 chr6 168964852 168965140 -20314414 + L1MEd LINE L1 1627 1944 -4452 * 646 235 8 0 chr6 168965200 168965319 -20314235 - FLAM_A SINE Alu -13 120 1 3613 199 40 10 chr6 168965378 168966838 -20312716 + L1MA9 LINE L1 4281 5789 -523 249 33 0 0 chr6 168966840 168966870 -20312684 + (CA)n Simple_repeat Simple_repeat 1 30 0 1096 168 5 15 chr6 168966902 168967105 -20312449 - Tigger5 DNA MER2_type 0 2323 2123 35 0 0 0 chr6 168967986 168968021 -20311533 + AT_rich Low_complexity Low_complexity 1 35 0 632 193 0 9 chr6 168968021 168968135 -20311419 - Tigger5 DNA MER2_type -2210 113 1 709 104 56 24 chr6 168968135 168968260 -20311294 + L1MA9 LINE L1 5782 5910 -279 2158 151 11 0 chr6 168968271 168968623 -20310931 + MER47A DNA MER2_type 11 366 0 1765 192 55 3 chr6 168968623 168969003 -20310551 + L1MA9 LINE L1 5905 6304 -8 999 125 40 0 chr6 168969061 168969237 -20310317 + L1MA5 LINE L1 6096 6278 -22 638 209 193 60 chr6 168969260 168969416 -20310138 + L1M4 LINE L1 4693 4827 -1319 1740 171 3 17 chr6 168969416 168969777 -20309777 + AluJb SINE Alu 1 357 0 638 209 193 60 chr6 168969777 168969920 -20309634 + L1M4 LINE L1 4827 5033 -1113 305 281 72 7 chr6 168969935 168970074 -20309480 + L1ME2 LINE L1 6001 6148 -16 241 200 0 0 chr6 168970394 168970439 -20309115 + MSTB1 LTR MaLR 382 426 -6 587 280 114 34 chr6 168970772 168971008 -20308546 - MIR SINE MIR -5 257 3 22 0 0 0 chr6 168971124 168971146 -20308408 + AT_rich Low_complexity Low_complexity 1 22 0 794 262 52 76 chr6 168971648 168971693 -20307861 - MLT1J LTR MaLR -30 481 436 2390 80 3 0 chr6 168971693 168971993 -20307561 - AluSc SINE Alu -8 301 1 794 262 52 76 chr6 168971993 168972355 -20307199 - MLT1J LTR MaLR -75 436 84 316 341 12 6 chr6 168972683 168972853 -20306701 - L1MC4a LINE L1 -1927 5881 5711 3532 117 56 5 chr6 168973077 168973648 -20305906 - LTR43 LTR ERV1 -2 600 1 1859 215 75 66 chr6 168973860 168974391 -20305163 - MLT1E2 LTR MaLR -89 537 2 2057 123 3 0 chr6 168974481 168974774 -20304780 - AluSg SINE Alu -16 294 1 5722 165 24 23 chr6 168974903 168975271 -20304283 - L1MA9 LINE L1 0 6312 5946 2152 127 0 0 chr6 168975271 168975571 -20303983 - AluSx SINE Alu -12 300 1 5722 165 24 23 chr6 168975571 168977230 -20302324 - L1MA9 LINE L1 -366 5946 4283 3187 184 46 7 chr6 168977233 168977928 -20301626 + L1MA9 LINE L1 3553 4274 -1872 605 255 13 32 chr6 168978690 168978847 -20300707 - L2 LINE L2 -1 3312 3159 1632 192 44 9 chr6 168978862 168979206 -20300348 + MLT1A1 LTR MaLR 10 365 0 372 313 47 0 chr6 168979231 168979381 -20300173 - L2 LINE L2 -191 3122 2966 24 53 0 0 chr6 168980307 168980345 -20299209 + AT_rich Low_complexity Low_complexity 1 38 0 2088 92 0 11 chr6 168981042 168981353 -20298201 + AluSx SINE Alu 1 308 0 336 24 0 0 chr6 168981525 168981566 -20297988 + (CA)n Simple_repeat Simple_repeat 2 42 0 209 204 0 0 chr6 168982113 168982162 -20297392 + (TA)n Simple_repeat Simple_repeat 1 49 0 24 67 0 0 chr6 168986223 168986268 -20293286 + AT_rich Low_complexity Low_complexity 1 45 0 382 341 24 8 chr6 168986707 168986830 -20292724 - MER5A DNA MER1_type -14 175 51 673 299 68 13 chr6 168986839 168987224 -20292330 - L1M4 LINE L1 -2412 3734 3329 336 276 143 41 chr6 168987226 168987422 -20292132 - L1MC4 LINE L1 -1 8041 7826 311 281 72 7 chr6 168987489 168987628 -20291926 - L1ME2 LINE L1 -16 6148 6001 663 209 193 60 chr6 168987643 168987786 -20291768 - L1M4 LINE L1 -1113 5033 4910 1706 171 3 17 chr6 168987786 168988127 -20291427 - AluJb SINE Alu 0 337 1 663 209 193 60 chr6 168988127 168988283 -20291271 - L1M4 LINE L1 -1236 4910 4693 1013 125 40 0 chr6 168988306 168988482 -20291072 - L1MA5 LINE L1 -22 6278 6096 1783 192 54 5 chr6 168988534 168988920 -20290634 - L1MA9 LINE L1 -3 6309 5905 2170 151 11 0 chr6 168988920 168989272 -20290282 - MER47A DNA MER2_type 0 366 11 716 104 56 24 chr6 168989283 168989408 -20290146 - L1MA9 LINE L1 -279 5910 5782 640 193 0 9 chr6 168989408 168989522 -20290032 + Tigger5 DNA MER2_type 1 113 -2210 35 0 0 0 chr6 168989522 168989557 -20289997 + AT_rich Low_complexity Low_complexity 1 35 0 1085 172 5 15 chr6 168990438 168990641 -20288913 + Tigger5 DNA MER2_type 2123 2323 0 231 36 0 0 chr6 168990673 168990701 -20288853 + (TG)n Simple_repeat Simple_repeat 1 28 0 3706 196 42 11 chr6 168990703 168992163 -20287391 - L1MA9 LINE L1 -500 5791 4281 636 235 8 0 chr6 168992222 168992341 -20287213 + FLAM_A SINE Alu 1 120 -13 2812 262 76 39 chr6 168992386 168994071 -20285483 - L1ME LINE L1 -4297 1783 31 213 234 0 0 chr6 168994151 168994215 -20285339 + CT-rich Low_complexity Low_complexity 1 64 0 504 240 44 61 chr6 168994215 168994577 -20284977 - L1MCb LINE L1 -2881 3683 3328 356 293 54 26 chr6 168994582 168994803 -20284751 - L1MCb LINE L1 -4959 1086 942 1062 290 77 44 chr6 168995614 168996227 -20283327 - L2 LINE L2 -188 3125 2491 2278 99 48 20 chr6 168997409 168997763 -20281791 + THE1B LTR MaLR 1 364 0 753 117 78 16 chr6 168998423 168998551 -20281003 - AluJo SINE Alu -176 136 1 189 333 43 21 chr6 168999062 168999155 -20280399 + MIR3 SINE MIR 114 208 0 449 281 71 31 chr6 168999390 168999614 -20279940 + MIR SINE MIR 30 262 0 277 361 49 21 chr6 168999793 168999937 -20279617 - MIR3 SINE MIR -10 198 51 1512 259 34 34 chr6 168999939 169000414 -20279140 - MLT1H LTR MaLR -2 547 73 28 0 0 0 chr6 169002554 169002582 -20276972 + AT_rich Low_complexity Low_complexity 1 28 0 1624 178 0 14 chr6 169002741 169003022 -20276532 - AluJb SINE Alu -10 302 26 22 0 0 0 chr6 169004953 169004975 -20274579 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 169005121 169005144 -20274410 + AT_rich Low_complexity Low_complexity 1 23 0 780 170 0 21 chr6 169005450 169005591 -20273963 - AluSq/x SINE Alu -174 138 1 288 336 18 18 chr6 169005628 169005738 -20273816 + L1ME LINE L1 5491 5600 -521 2306 92 3 3 chr6 169006120 169006424 -20273130 + AluSp SINE Alu 1 304 -9 1989 76 80 4 chr6 169006957 169007232 -20272322 + AluSg SINE Alu 1 296 -14 2194 118 0 0 chr6 169007887 169008191 -20271363 + AluSx SINE Alu 1 304 -8 1692 154 0 33 chr6 169008619 169008918 -20270636 + AluJo SINE Alu 1 289 -23 3551 129 37 3 chr6 169010052 169010625 -20268929 + LTR38B LTR ERV1 1 592 -18 21 36 0 0 chr6 169010742 169010770 -20268784 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr6 169011297 169011323 -20268231 + AT_rich Low_complexity Low_complexity 1 26 0 2359 68 0 0 chr6 169011376 169011684 -20267870 - L1PA5 LINE L1 0 6154 5847 1286 167 0 5 chr6 169011754 169011970 -20267584 - AluJb SINE Alu -12 300 86 255 200 65 125 chr6 169012707 169012907 -20266647 + MLT1D LTR MaLR 167 354 -151 1845 238 34 111 chr6 169012907 169013098 -20266456 - L1M4 LINE L1 -5843 699 495 1860 174 3 0 chr6 169013098 169013409 -20266145 - AluJb SINE Alu 0 312 1 1845 238 34 111 chr6 169013409 169013958 -20265596 - L1M4 LINE L1 -6047 495 16 246 184 0 0 chr6 169015806 169015844 -20263710 - 5S rRNA rRNA -82 39 2 204 231 0 19 chr6 169015906 169015958 -20263596 + CT-rich Low_complexity Low_complexity 3 53 0 21 36 0 0 chr6 169017233 169017261 -20262293 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr6 169017350 169017403 -20262151 + AT_rich Low_complexity Low_complexity 1 53 0 398 289 9 18 chr6 169017434 169017548 -20262006 - MIR SINE MIR -147 115 3 264 324 35 21 chr6 169017934 169018076 -20261478 + L1ME LINE L1 5595 5738 -383 23 0 0 0 chr6 169018134 169018157 -20261397 + AT_rich Low_complexity Low_complexity 1 23 0 518 283 56 40 chr6 169018517 169018715 -20260839 + MIR SINE MIR 44 244 -18 23 0 0 0 chr6 169019106 169019129 -20260425 + AT_rich Low_complexity Low_complexity 1 23 0 24 85 0 0 chr6 169019232 169019291 -20260263 + AT_rich Low_complexity Low_complexity 1 59 0 285 258 31 61 chr6 169019310 169019473 -20260081 - L1ME LINE L1 -393 5728 5571 2124 91 3 14 chr6 169020035 169020356 -20259198 - AluSp SINE Alu 0 318 1 25 65 0 0 chr6 169020749 169020795 -20258759 + AT_rich Low_complexity Low_complexity 1 46 0 189 318 0 0 chr6 169021478 169021522 -20258032 - L2 LINE L2 -51 3221 3178 214 188 0 42 chr6 169022050 169022098 -20257456 - L2 LINE L2 0 3313 3268 271 379 84 14 chr6 169022320 169022689 -20256865 - L2 LINE L2 -338 2976 2582 201 39 0 0 chr6 169023054 169023080 -20256474 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1860 145 0 35 chr6 169023082 169023372 -20256182 - AluSx SINE Alu -32 280 1 659 277 87 29 chr6 169024585 169024827 -20254727 - LTR33 LTR ERVL -229 292 37 682 234 6 13 chr6 169025324 169025482 -20254072 + FRAM SINE Alu 1 157 -9 250 212 15 0 chr6 169026261 169026327 -20253227 - Tigger7 DNA MER2_type -33 2554 2488 1436 191 4 0 chr6 169026344 169026585 -20252969 - Tigger7 DNA MER2_type -2244 243 2 270 176 69 6 chr6 169027233 169027392 -20252162 + (TA)n Simple_repeat Simple_repeat 2 170 0 1122 210 37 63 chr6 169027481 169027679 -20251875 - MER58B DNA MER1_type -2081 339 150 1196 134 194 32 chr6 169027679 169027932 -20251622 + AluSg SINE Alu 1 294 -6 1122 210 37 63 chr6 169027932 169028033 -20251521 - MER58B DNA MER1_type -2270 150 48 341 351 48 0 chr6 169028529 169028666 -20250888 + MIR SINE MIR 13 154 -54 29 60 0 0 chr6 169029135 169029185 -20250369 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr6 169035389 169035412 -20244142 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr6 169035812 169035845 -20243709 + AT_rich Low_complexity Low_complexity 1 33 0 628 253 11 45 chr6 169036381 169036559 -20242995 + MER5B DNA MER1_type 1 172 -6 752 255 37 11 chr6 169037983 169038171 -20241383 - MER58A DNA MER1_type 0 224 32 981 269 76 62 chr6 169039874 169040309 -20239245 - MLT1J LTR MaLR -42 469 29 21 0 0 0 chr6 169040581 169040602 -20238952 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 169040717 169040740 -20238814 + AT_rich Low_complexity Low_complexity 1 23 0 185 289 0 0 chr6 169040775 169040820 -20238734 - L2 LINE L2 -4 3268 3224 1826 245 86 112 chr6 169040827 169041292 -20238262 - L2 LINE L2 -340 2974 2498 543 143 0 0 chr6 169041292 169041376 -20238178 + AluJ/FLAM SINE Alu 1 84 -228 1826 245 86 112 chr6 169041376 169041693 -20237861 - L2 LINE L2 -816 2498 2138 1799 206 91 2 chr6 169041693 169042120 -20237434 - MLT1C LTR MaLR 0 467 3 1826 245 86 112 chr6 169042120 169042295 -20237259 - L2 LINE L2 -1176 2138 1960 599 224 0 119 chr6 169042309 169042519 -20237035 - L2 LINE L2 0 3313 3129 2079 94 19 23 chr6 169042519 169042827 -20236727 - THE1B LTR MaLR -57 307 1 919 275 132 3 chr6 169042853 169043224 -20236330 - L2 LINE L2 -1623 1691 1273 330 67 0 0 chr6 169043364 169043409 -20236145 + (CA)n Simple_repeat Simple_repeat 2 46 0 636 226 158 42 chr6 169044310 169044451 -20235103 - MER99 DNA DNA -18 810 640 2111 139 67 21 chr6 169044451 169044824 -20234730 - MLT1B LTR MaLR 0 390 1 636 226 158 42 chr6 169044824 169044872 -20234682 - MER99 DNA DNA -188 640 599 26 30 0 0 chr6 169045069 169045102 -20234452 + AT_rich Low_complexity Low_complexity 1 33 0 544 188 0 0 chr6 169045124 169045220 -20234334 - MER99 DNA DNA -731 97 2 501 133 0 42 chr6 169045579 169045699 -20233855 + (TCCCC)n Simple_repeat Simple_repeat 5 119 0 2094 169 34 35 chr6 169045898 169046451 -20233103 - MLT2A2 LTR ERVL 0 554 1 332 299 104 30 chr6 169046500 169046664 -20232890 + HAL1 LINE L1 1116 1291 -1216 216 158 0 0 chr6 169047065 169047103 -20232451 + (CA)n Simple_repeat Simple_repeat 2 39 0 1151 113 14 52 chr6 169048130 169048342 -20231212 + L1PB2 LINE L1 5941 6144 -7 236 196 0 0 chr6 169048345 169048396 -20231158 + A-rich Low_complexity Low_complexity 1 51 0 2428 81 3 0 chr6 169048424 169048734 -20230820 + AluY SINE Alu 1 311 0 24 53 0 0 chr6 169048894 169048932 -20230622 + AT_rich Low_complexity Low_complexity 1 38 0 1225 269 46 28 chr6 169052015 169052296 -20227258 - L1M4 LINE L1 -957 5189 4914 2206 93 0 45 chr6 169052296 169052607 -20226947 + AluSx SINE Alu 1 297 -15 1225 269 46 28 chr6 169052607 169052890 -20226664 - L1M4 LINE L1 -1232 4914 4615 2198 112 0 3 chr6 169053818 169054123 -20225431 + AluY SINE Alu 1 304 -7 2314 90 3 0 chr6 169054205 169054504 -20225050 + AluSx SINE Alu 1 300 -12 385 348 98 4 chr6 169054584 169054820 -20224734 - MIR SINE MIR 0 262 5 369 294 150 40 chr6 169054824 169055150 -20224404 - L2 LINE L2 -859 2455 2094 1131 223 72 0 chr6 169055168 169055433 -20224121 - L1ME3A LINE L1 -43 6127 5844 1358 233 256 19 chr6 169055501 169055867 -20223687 + MLT1E LTR MaLR 68 550 -43 3399 75 4 2 chr6 169055867 169056323 -20223231 + L1PA10 LINE L1 5709 6165 -3 1358 233 256 19 chr6 169056323 169056381 -20223173 + MLT1E LTR MaLR 550 593 0 24 53 0 0 chr6 169056397 169056435 -20223119 + AT_rich Low_complexity Low_complexity 1 38 0 204 40 0 0 chr6 169056484 169056509 -20223045 + (TG)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr6 169056508 169056529 -20223025 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 308 270 131 38 chr6 169056548 169056785 -20222769 - LTR41 LTR ERVL -6 767 509 361 207 221 21 chr6 169057121 169057266 -20222288 - LTR41 LTR ERVL -599 174 1 26 0 0 0 chr6 169057328 169057354 -20222200 + AT_rich Low_complexity Low_complexity 1 26 0 2242 92 7 0 chr6 169057354 169057646 -20221908 + AluSc SINE Alu 1 294 -15 627 270 80 65 chr6 169057684 169058037 -20221517 + L1M4 LINE L1 3129 3475 -2671 1421 206 52 27 chr6 169058037 169058402 -20221152 + MLT1A2 LTR MaLR 1 374 0 627 270 80 65 chr6 169058402 169058444 -20221110 + L1M4 LINE L1 3475 3515 -2631 2191 84 0 11 chr6 169058444 169058765 -20220789 - AluSq SINE Alu 0 318 1 627 270 80 65 chr6 169058765 169058979 -20220575 + L1M4 LINE L1 3515 3749 -2397 472 222 16 0 chr6 169058990 169059116 -20220438 - L1MA7 LINE L1 0 6291 6164 * 2653 170 148 25 chr6 169059114 169059383 -20220171 - L1MA6 LINE L1 -235 6065 5831 2206 113 22 38 chr6 169059383 169059753 -20219801 + THE1B LTR MaLR 1 364 0 2653 170 148 25 chr6 169059753 169060089 -20219465 - L1MA6 LINE L1 -469 5831 5385 1268 279 121 29 chr6 169060092 169060271 -20219283 - L1M3b LINE L1 -5493 648 487 1692 190 17 0 chr6 169060271 169060571 -20218983 + AluJo SINE Alu 1 305 -7 1268 279 121 29 chr6 169060571 169060872 -20218682 - L1M3b LINE L1 -5654 487 124 310 250 33 33 chr6 169060994 169061086 -20218468 - L1M3b LINE L1 -6036 105 14 475 314 122 8 chr6 169061095 169061481 -20218073 + L1M4 LINE L1 3733 4162 -1984 372 230 0 0 chr6 169061488 169061562 -20217992 + L1ME LINE L1 5667 5740 -430 2009 113 0 0 chr6 169062866 169063132 -20216422 - AluSg SINE Alu 0 310 45 246 184 0 0 chr6 169063132 169063170 -20216384 + Alu SINE Alu 8 45 -263 318 265 48 0 chr6 169063185 169063268 -20216286 + L2 LINE L2 3225 3311 -2 910 154 35 38 chr6 169063561 169063837 -20215717 + L1MB2 LINE L1 5794 6119 -52 215 308 0 0 chr6 169064574 169064626 -20214928 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 2505 126 3 8 chr6 169065703 169066069 -20213485 - THE1B LTR MaLR 0 364 1 2471 109 8 3 chr6 169066532 169066900 -20212654 - L1PB1 LINE L1 0 6151 5782 291 28 0 0 chr6 169066996 169067032 -20212522 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1844 151 0 11 chr6 169067032 169067316 -20212238 - AluSq SINE Alu -32 281 1 3566 184 39 2 chr6 169067382 169067956 -20211598 - L1PB1 LINE L1 -356 5795 5244 261 0 0 0 chr6 169067956 169067985 -20211569 + (TTA)n Simple_repeat Simple_repeat 3 31 0 3566 184 39 2 chr6 169067985 169068657 -20210897 - L1PB1 LINE L1 -907 5244 4502 751 251 40 66 chr6 169069398 169069535 -20210019 + LTR16A1 LTR ERVL 1 140 -317 2004 133 0 29 chr6 169069535 169069844 -20209710 - AluSx SINE Alu -8 304 5 751 251 40 66 chr6 169069844 169070085 -20209469 + LTR16A1 LTR ERVL 140 369 -88 710 303 76 44 chr6 169070147 169070622 -20208932 + HERV16 LTR ERVL 335 824 -4172 216 209 30 30 chr6 169071064 169071131 -20208423 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 1307 173 32 0 chr6 169071131 169071379 -20208175 - L1MD3 LINE L1 -10 7985 7730 191 130 0 22 chr6 169072943 169072989 -20206565 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 242 231 29 19 chr6 169074320 169074424 -20205130 + (TA)n Simple_repeat Simple_repeat 1 105 0 1270 196 119 39 chr6 169076400 169076737 -20202817 - THE1B LTR MaLR 0 364 1 2157 100 6 12 chr6 169078117 169078438 -20201116 + L1MA2 LINE L1 5980 6298 -6 330 337 87 23 chr6 169078797 169078969 -20200585 - MIR3 SINE MIR -17 191 9 215 293 40 27 chr6 169079389 169079464 -20200090 - L3 LINE CR1 -2 1575 1500 415 277 18 18 chr6 169079604 169079716 -20199838 + MIR SINE MIR 36 147 -115 232 87 43 0 chr6 169080318 169080364 -20199190 - L1MC4 LINE L1 -1340 6702 6655 226 194 0 0 chr6 169080903 169080939 -20198615 + L1MC/D LINE L1 5619 5654 -2154 22 56 0 0 chr6 169081112 169081148 -20198406 + AT_rich Low_complexity Low_complexity 1 36 0 527 260 119 55 chr6 169081278 169081497 -20198057 - MIR SINE MIR -27 235 3 22 70 0 0 chr6 169081746 169081789 -20197765 + AT_rich Low_complexity Low_complexity 1 43 0 5290 162 35 29 chr6 169082114 169084128 -20195426 - L1PA16 LINE L1 -26 6140 4121 2116 103 50 36 chr6 169084376 169084735 -20194819 + THE1B LTR MaLR 1 364 0 275 330 0 0 chr6 169085584 169085672 -20193882 - L1P LINE L1 -4328 1818 1731 21 0 0 0 chr6 169085969 169085990 -20193564 + AT_rich Low_complexity Low_complexity 1 21 0 290 302 165 33 chr6 169086388 169086570 -20192984 + MIR SINE MIR 51 256 -6 24 32 0 0 chr6 169086676 169086707 -20192847 + AT_rich Low_complexity Low_complexity 1 31 0 317 347 233 18 chr6 169087179 169087505 -20192049 + L1MC/D LINE L1 5411 5806 -2002 22 0 0 0 chr6 169087822 169087844 -20191710 + AT_rich Low_complexity Low_complexity 1 22 0 2349 40 44 13 chr6 169088361 169088659 -20190895 - AluY SINE Alu -3 308 2 401 343 153 21 chr6 169088834 169089271 -20190283 + HAL1b LINE L1 67 561 -787 25 31 0 0 chr6 169089558 169089590 -20189964 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr6 169090041 169090069 -20189485 + AT_rich Low_complexity Low_complexity 1 28 0 5307 161 50 12 chr6 169090817 169091789 -20187765 - L1MC1 LINE L1 -17 6316 5308 769 143 23 23 chr6 169091827 169092169 -20187385 + CT-rich Low_complexity Low_complexity 1 341 0 1282 217 78 0 chr6 169092171 169092429 -20187125 - AluJb SINE Alu -32 280 3 1301 256 14 0 chr6 169092429 169092784 -20186770 - L1MC1 LINE L1 -839 5307 4948 * 1935 253 12 19 chr6 169092782 169093366 -20186188 - L1MC1 LINE L1 -2255 3891 3312 185 282 70 14 chr6 169094483 169094554 -20185000 - MIR SINE MIR -120 142 68 * 374 297 22 60 chr6 169094522 169094707 -20184847 - L2 LINE L2 -4 3309 3132 2328 68 0 26 chr6 169096724 169097033 -20182521 - AluY SINE Alu -9 302 2 4824 60 0 28 chr6 169097938 169098589 -20180965 + L1PA7 LINE L1 5514 6146 -8 22 35 0 0 chr6 169099062 169099091 -20180463 + AT_rich Low_complexity Low_complexity 1 29 0 451 301 120 0 chr6 169099312 169099495 -20180059 + MIR SINE MIR 2 206 -56 232 94 113 0 chr6 169099521 169099574 -20179980 + L1MA7 LINE L1 6233 6291 0 211 307 13 13 chr6 169100105 169100180 -20179374 + MIR3 SINE MIR 125 199 -9 414 340 10 34 chr6 169100735 169100941 -20178613 - MIR SINE MIR -1 261 61 22 0 0 0 chr6 169101145 169101167 -20178387 + AT_rich Low_complexity Low_complexity 1 22 0 860 203 0 6 chr6 169101987 169102164 -20177390 + MER96B DNA MER1_type? 1 176 -241 26 30 0 0 chr6 169103249 169103282 -20176272 + AT_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr6 169103410 169103451 -20176103 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr6 169103546 169103574 -20175980 + AT_rich Low_complexity Low_complexity 1 28 0 1192 292 109 20 chr6 169103755 169104583 -20174971 + L1M4 LINE L1 2115 3015 -3131 * 1285 143 26 41 chr6 169104582 169104848 -20174706 + L1MA9 LINE L1 6010 6271 -41 315 0 0 0 chr6 169104848 169104883 -20174671 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 258 128 0 0 chr6 169104917 169104956 -20174598 + AluSq/x SINE Alu 69 107 -195 21 0 0 0 chr6 169105008 169105029 -20174525 + AT_rich Low_complexity Low_complexity 1 21 0 5363 136 46 3 chr6 169105057 169105913 -20173641 - Tigger1 DNA MER2_type -1519 899 8 400 231 91 16 chr6 169105964 169106085 -20173469 + MER58C DNA MER1_type 2 131 -84 393 114 89 13 chr6 169106085 169106164 -20173390 + L1MB1 LINE L1 6065 6149 -40 26 0 0 0 chr6 169106192 169106218 -20173336 + AT_rich Low_complexity Low_complexity 1 26 0 208 216 0 0 chr6 169106285 169106322 -20173232 + (CA)n Simple_repeat Simple_repeat 2 38 0 763 171 27 0 chr6 169106327 169106473 -20173081 + L1MA10 LINE L1 6175 6324 -10 840 221 58 0 chr6 169106473 169106699 -20172855 + MER69 DNA AcHobo 2287 2525 -1 180 0 0 0 chr6 169107006 169107026 -20172528 + (A)n Simple_repeat Simple_repeat 1 20 0 1440 179 79 10 chr6 169107056 169107346 -20172208 - AluJb SINE Alu -2 310 1 291 200 58 75 chr6 169109155 169109192 -20170362 - L1MC4 LINE L1 -16 8026 7990 2018 109 0 0 chr6 169109192 169109468 -20170086 + AluSx SINE Alu 33 308 -4 291 200 58 75 chr6 169109468 169109550 -20170004 - L1MC4 LINE L1 -52 7990 7909 182 186 47 0 chr6 169109563 169109649 -20169905 + (TA)n Simple_repeat Simple_repeat 1 90 0 239 109 0 0 chr6 169109675 169109721 -20169833 + LTR66 LTR ERVL 394 439 -171 3669 219 98 15 chr6 169109730 169110773 -20168781 - L1MC4 LINE L1 -147 7895 6767 326 301 32 16 chr6 169110814 169110937 -20168617 - L1MC4 LINE L1 -1373 6669 6545 1293 251 104 10 chr6 169110964 169111359 -20168195 - LTR40c LTR ERVL -32 433 2 604 281 142 3 chr6 169111364 169111688 -20167866 - L1MC4a LINE L1 -1281 6527 6159 189 107 0 0 chr6 169111724 169111752 -20167802 + (A)n Simple_repeat Simple_repeat 1 28 0 1022 178 11 5 chr6 169111765 169111950 -20167604 + L1PA15 LINE L1 5971 6156 -9 23 0 0 0 chr6 169111950 169111973 -20167581 + AT_rich Low_complexity Low_complexity 1 23 0 388 284 95 24 chr6 169112398 169112567 -20166987 + L1MC5 LINE L1 7039 7219 -742 234 303 46 59 chr6 169112597 169112749 -20166805 + L1MC4a LINE L1 7244 7393 -415 * 905 256 145 33 chr6 169112722 169113211 -20166343 + L1MC5 LINE L1 7273 7816 -145 1828 154 7 7 chr6 169113660 169113959 -20165595 + AluJb SINE Alu 3 301 -11 24 32 0 0 chr6 169113998 169114029 -20165525 + AT_rich Low_complexity Low_complexity 1 31 0 216 67 0 0 chr6 169114057 169114087 -20165467 + (TG)n Simple_repeat Simple_repeat 1 30 0 5327 157 140 62 chr6 169114158 169115652 -20163902 + pTR5 LTR ERV1 743 2438 0 579 121 0 0 chr6 169115652 169115743 -20163811 - L1MA6 LINE L1 -22 6278 6188 1785 120 39 99 chr6 169115746 169115951 -20163603 - THE1C LTR MaLR 0 375 202 2285 93 3 3 chr6 169115951 169116252 -20163302 - AluSq SINE Alu -12 301 1 1785 120 39 99 chr6 169116252 169116428 -20163126 - THE1C LTR MaLR -173 202 17 36 62 0 0 chr6 169116431 169116495 -20163059 + AT_rich Low_complexity Low_complexity 1 64 0 7921 119 33 2 chr6 169118652 169119910 -20159644 - HSMAR2 DNA Mariner -1 1301 5 201 94 0 0 chr6 169120390 169120422 -20159132 + (TTTAG)n Simple_repeat Simple_repeat 3 34 0 2740 232 33 19 chr6 169120794 169120876 -20158678 + L1M4 LINE L1 990 1069 -5577 3174 120 6 42 chr6 169120876 169121401 -20158153 - MER84 LTR ERV1 0 507 2 2740 232 33 19 chr6 169121401 169122161 -20157393 + L1M4 LINE L1 1069 1864 -4782 3303 156 57 14 chr6 169122670 169123317 -20156237 + L1MB1 LINE L1 5494 6168 0 1571 189 7 7 chr6 169123693 169123979 -20155575 - AluJb SINE Alu -22 290 5 21 0 0 31 chr6 169124244 169124264 -20155290 + AT_rich Low_complexity Low_complexity 1 21 -10 5494 14 2 0 chr6 169124264 169124891 -20154663 - L1PA3 LINE L1 0 6155 5528 21 0 0 31 chr6 169124891 169124902 -20154652 + AT_rich Low_complexity Low_complexity 21 31 0 256 239 119 0 chr6 169125183 169125250 -20154304 - L2 LINE L2 0 3313 3239 257 282 167 0 chr6 169125277 169125355 -20154199 + MLT1A1 LTR MaLR 2 92 -273 192 322 77 28 chr6 169125527 169125670 -20153884 - L2 LINE L2 -1182 2132 1983 1322 153 31 0 chr6 169125672 169125900 -20153654 + L1MA7 LINE L1 5637 5871 -420 1240 144 42 34 chr6 169125892 169125925 -20153629 + L1MA7 LINE L1 5789 5820 -471 * 440 172 21 0 chr6 169125925 169126018 -20153536 + L1PA16 LINE L1 6071 6165 -1 1240 144 42 34 chr6 169126018 169126247 -20153307 + L1MA7 LINE L1 5820 6053 -238 511 227 23 0 chr6 169126248 169126376 -20153178 + L1MA7 LINE L1 6161 6291 0 290 277 119 13 chr6 169126519 169126678 -20152876 - L2 LINE L2 -1318 1996 1821 2250 141 47 0 chr6 169126771 169127112 -20152442 - LTR18A LTR ERVL 0 357 1 2053 123 0 0 chr6 169127902 169128178 -20151376 + AluSx SINE Alu 21 296 -16 198 0 0 0 chr6 169128193 169128215 -20151339 + (CA)n Simple_repeat Simple_repeat 2 23 0 502 291 104 11 chr6 169129439 169129621 -20149933 - MIR SINE MIR -16 246 48 21 57 0 0 chr6 169129661 169129696 -20149858 + AT_rich Low_complexity Low_complexity 1 35 0 1796 159 10 3 chr6 169129833 169130122 -20149432 - AluSx SINE Alu -13 299 9 784 273 41 11 chr6 169131289 169131556 -20147998 - HAL1 LINE L1 -2141 366 92 2241 107 3 0 chr6 169131827 169132127 -20147427 + AluSx SINE Alu 1 301 -11 266 180 16 0 chr6 169132715 169132776 -20146778 + CT-rich Low_complexity Low_complexity 4 65 0 227 286 163 0 chr6 169132795 169132893 -20146661 - L1ME LINE L1 -201 5920 5807 300 27 0 0 chr6 169133755 169133792 -20145762 + (TG)n Simple_repeat Simple_repeat 2 38 0 1919 156 3 3 chr6 169134856 169135158 -20144396 + AluSx SINE Alu 1 302 -10 207 175 0 25 chr6 169135467 169135507 -20144047 + G-rich Low_complexity Low_complexity 2 40 0 206 358 37 0 chr6 169135684 169135765 -20143789 - L2 LINE L2 0 3272 3189 2038 146 0 7 chr6 169135939 169136241 -20143313 - AluSx SINE Alu -12 300 1 389 306 88 9 chr6 169136252 169136468 -20143086 - L1ME4a LINE L1 -210 5911 5679 380 275 66 30 chr6 169136487 169136654 -20142900 + MLT1J LTR MaLR 9 181 -330 339 216 9 165 chr6 169137779 169137997 -20141557 + MIR SINE MIR 73 256 -6 957 144 7 20 chr6 169138517 169138670 -20140884 + AluJb SINE Alu 114 264 -48 3160 125 49 2 chr6 169138723 169139234 -20140320 + Tigger3(Golem) DNA MER2_type 2480 3014 -15 681 319 69 14 chr6 169139246 169140101 -20139453 + L1M4 LINE L1 2504 3405 -2741 201 196 0 0 chr6 169140145 169140196 -20139358 + T-rich Low_complexity Low_complexity 1 51 0 210 233 0 0 chr6 169140199 169140259 -20139295 + (TA)n Simple_repeat Simple_repeat 2 61 0 190 210 0 97 chr6 169140413 169140475 -20139079 - L2 LINE L2 -592 2722 2667 822 173 0 0 chr6 169141586 169141719 -20137835 + FLAM_C SINE Alu 1 133 0 27 0 0 0 chr6 169141759 169141786 -20137768 + AT_rich Low_complexity Low_complexity 1 27 0 280 191 36 24 chr6 169141886 169141970 -20137584 + (TA)n Simple_repeat Simple_repeat 2 86 0 369 275 244 0 chr6 169142542 169142673 -20136881 - MER5A DNA MER1_type 0 189 27 275 250 47 42 chr6 169143119 169143268 -20136286 + MIR SINE MIR 19 167 -63 * 478 240 19 0 chr6 169143259 169143363 -20136191 - L2 LINE L2 -1 3312 3207 785 207 69 47 chr6 169143506 169143738 -20135816 - MIR SINE MIR -12 250 14 22 0 0 0 chr6 169144886 169144908 -20134646 + AT_rich Low_complexity Low_complexity 1 22 0 2122 96 28 0 chr6 169144913 169145204 -20134350 - AluSc SINE Alu -10 299 1 744 155 0 0 chr6 169145239 169145355 -20134199 + FRAM SINE Alu 54 169 -7 853 236 10 0 chr6 169145977 169146176 -20133378 - MER105 DNA DNA -2 202 2 195 339 0 16 chr6 169146189 169146251 -20133303 + L2 LINE L2 3212 3272 0 347 356 52 0 chr6 169146563 169146737 -20132817 - MIR SINE MIR -23 239 57 2155 93 10 7 chr6 169146913 169147204 -20132350 + AluSc SINE Alu 1 292 -17 198 214 0 0 chr6 169147702 169147744 -20131810 - L2 LINE L2 0 3272 3231 745 113 0 4 chr6 169148099 169148293 -20131261 + AluSx SINE Alu 22 292 -20 925 197 82 21 chr6 169148293 169148561 -20130993 - MER33 DNA MER1_type -51 273 1 2243 87 3 20 chr6 169148934 169149234 -20130320 - AluSp SINE Alu -18 295 1 1349 241 154 43 chr6 169150284 169150349 -20129205 - MLT1F LTR MaLR -2 540 484 1602 146 130 0 chr6 169150349 169150602 -20128952 + AluSx SINE Alu 1 286 -26 1349 241 154 43 chr6 169150602 169151022 -20128532 - MLT1F LTR MaLR -58 484 1 356 260 35 133 chr6 169151026 169151311 -20128243 - MLT1F-int LTR MaLR -6 1365 1109 655 211 0 0 chr6 169151314 169151442 -20128112 + L1MA7 LINE L1 4064 4191 -1955 * 2006 184 11 3 chr6 169151435 169151809 -20127745 + L1MB7 LINE L1 5512 5888 -296 2140 110 3 20 chr6 169151809 169152110 -20127444 + AluSx SINE Alu 1 296 -16 2635 253 103 73 chr6 169152115 169152905 -20126649 + MSTD-int LTR MaLR 553 1373 -362 1396 211 10 14 chr6 169152905 169153194 -20126360 + AluJb SINE Alu 1 288 -24 2635 253 103 73 chr6 169153194 169153290 -20126264 + MSTD-int LTR MaLR 1373 1465 -270 1314 163 44 19 chr6 169153290 169153560 -20125994 - LTR43 LTR ERV1 0 602 326 486 128 26 0 chr6 169153560 169153638 -20125916 + MADE1 DNA Mariner 1 80 0 * 1089 150 8 96 chr6 169153638 169153697 -20125857 - LTR43 LTR ERV1 -275 327 264 2149 146 0 0 chr6 169153697 169154006 -20125548 - AluSx SINE Alu -3 309 1 1089 150 8 96 chr6 169154006 169154154 -20125400 - LTR43 LTR ERV1 -338 264 141 2125 116 31 0 chr6 169154154 169154448 -20125106 + AluSg SINE Alu 1 303 -7 1089 150 8 96 chr6 169154448 169154476 -20125078 - LTR43 LTR ERV1 -461 141 112 379 149 162 0 chr6 169155205 169155279 -20124275 - LTR43 LTR ERV1 -516 86 1 1125 143 83 71 chr6 169155279 169155545 -20124009 + MSTD-int LTR MaLR 1462 1730 -5 1210 219 107 83 chr6 169155554 169155591 -20123963 + MSTD LTR MaLR 2 37 -359 1715 172 0 36 chr6 169155591 169155893 -20123661 + AluJb SINE Alu 1 291 -21 1210 219 107 83 chr6 169155893 169156059 -20123495 + MSTD LTR MaLR 37 198 -198 2303 93 3 7 chr6 169156059 169156361 -20123193 - AluSx SINE Alu -11 301 1 1210 219 107 83 chr6 169156361 169156530 -20123024 + MSTD LTR MaLR 198 384 -12 730 183 0 0 chr6 169156544 169156681 -20122873 - L1 LINE L1 -2355 3791 3655 * 5299 157 50 34 chr6 169156676 169158657 -20120897 + L1MA7 LINE L1 4282 6289 -2 1687 229 75 57 chr6 169158650 169159610 -20119944 + L1ME1 LINE L1 1615 2551 -3664 * 310 137 20 0 chr6 169159620 169159671 -20119883 + Tigger5 DNA MER2_type 28 79 -2244 2429 241 88 19 chr6 169159773 169161703 -20117851 + L1ME1 LINE L1 2554 4665 -1550 996 164 0 44 chr6 169161706 169161956 -20117598 - pTR5 LTR ERV1 -1451 987 749 17944 78 17 5 chr6 169161956 169165153 -20114401 - L1PA7 LINE L1 -127 6027 2799 383 223 281 18 chr6 169165153 169165377 -20114177 + L1ME1 LINE L1 5767 6049 -186 183 196 87 0 chr6 169168711 169168757 -20110797 + MER5B DNA MER1_type 2 51 -127 * 312 250 10 83 chr6 169168752 169168848 -20110706 - MER5B DNA MER1_type -89 89 1 2073 91 21 14 chr6 169169062 169169347 -20110207 + AluSc SINE Alu 14 300 -9 614 167 0 0 chr6 169169594 169169690 -20109864 + AluSp/q SINE Alu 202 297 -16 1008 106 183 48 chr6 169170076 169170284 -20109270 + MER46A DNA MER2_type 1 236 0 604 191 126 55 chr6 169172279 169172462 -20107092 - MER20 DNA MER1_type 0 219 24 181 226 19 57 chr6 169172915 169172968 -20106586 + L2 LINE L2 3237 3287 -26 198 237 184 44 chr6 169173439 169173553 -20106001 - MIR SINE MIR -77 185 56 22 0 0 0 chr6 169173847 169173869 -20105685 + GC_rich Low_complexity Low_complexity 1 22 0 1833 167 3 13 chr6 169174180 169174486 -20105068 + AluJo SINE Alu 6 308 -4 3436 194 162 8 chr6 169174520 169175428 -20104126 - L1MC3 LINE L1 -33 7752 6705 555 316 73 22 chr6 169175998 169176314 -20103240 - L2 LINE L2 -597 2717 2386 239 363 65 8 chr6 169176235 169176359 -20103195 + MIR SINE MIR 19 149 -113 * 182 347 0 53 chr6 169176551 169176626 -20102928 + MIR SINE MIR 24 94 -168 28 48 0 0 chr6 169177204 169177246 -20102308 + AT_rich Low_complexity Low_complexity 1 42 0 596 186 78 6 chr6 169179894 169180061 -20099493 - MER96B DNA MER1_type? -238 179 1 231 276 66 26 chr6 169180063 169180139 -20099415 - L2 LINE L2 -53 3219 3141 392 288 57 45 chr6 169180308 169180485 -20099069 - L2 LINE L2 -412 2902 2724 224 244 128 58 chr6 169180635 169180721 -20098833 - MIR SINE MIR -168 94 3 2037 115 20 0 chr6 169180877 169181172 -20098382 - AluSx SINE Alu -11 301 1 1488 127 71 28 chr6 169181505 169181758 -20097796 + AluJb SINE Alu 1 264 -48 2246 100 3 3 chr6 169182137 169182437 -20097117 + AluSq SINE Alu 1 300 -13 488 163 418 7 chr6 169182505 169182658 -20096896 - MER20 DNA MER1_type 0 219 4 265 314 102 27 chr6 169182772 169183065 -20096489 - L2 LINE L2 -446 2868 2554 1017 191 165 23 chr6 169183507 169183816 -20095738 - MLT1A1 LTR MaLR -12 353 1 316 250 36 0 chr6 169183821 169183905 -20095649 + LTR41 LTR ERVL 83 169 -604 294 175 0 16 chr6 169183922 169183985 -20095569 + MLT2D LTR ERVL 1 62 -352 983 252 19 32 chr6 169184039 169184353 -20095201 + MLT2D LTR ERVL 55 364 -50 334 139 19 83 chr6 169184638 169184746 -20094808 + LTR41 LTR ERVL 660 760 -13 257 242 0 0 chr6 169184947 169185009 -20094545 + Tigger5 DNA MER2_type 2257 2318 -5 339 167 0 0 chr6 169185117 169185177 -20094377 + Tigger5 DNA MER2_type 2264 2323 0 296 329 48 20 chr6 169185732 169185878 -20093676 + MIR SINE MIR 20 169 -93 2212 110 0 3 chr6 169186010 169186318 -20093236 + AluSq SINE Alu 1 307 -6 2564 39 0 10 chr6 169187011 169187318 -20092236 - AluY SINE Alu -7 304 1 21 0 0 0 chr6 169189825 169189846 -20089708 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr6 169190816 169190852 -20088702 + AT_rich Low_complexity Low_complexity 1 36 0 524 324 16 16 chr6 169191243 169191425 -20088129 - MIR3 SINE MIR -7 201 20 466 250 97 51 chr6 169191502 169191698 -20087856 - MIR SINE MIR -7 255 51 7181 115 34 15 chr6 169192362 169193586 -20085968 + HSMAR2 DNA Mariner 54 1301 -1 189 0 0 0 chr6 169193626 169193647 -20085907 + (A)n Simple_repeat Simple_repeat 1 21 0 517 154 9 9 chr6 169193785 169193895 -20085659 + L1MA9 LINE L1 6202 6311 -1 2543 103 28 11 chr6 169194982 169195340 -20084214 + THE1B LTR MaLR 1 364 0 305 344 96 0 chr6 169195555 169195680 -20083874 + MIR3 SINE MIR 50 186 -22 854 128 174 0 chr6 169195718 169195914 -20083640 - MER33 DNA MER1_type -94 230 1 187 206 0 0 chr6 169195994 169196028 -20083526 - L2 LINE L2 -10 3303 3270 322 343 123 63 chr6 169196168 169196337 -20083217 + L2 LINE L2 1815 1972 -1342 2174 125 3 0 chr6 169196337 169196642 -20082912 - AluJb SINE Alu -6 306 1 322 343 123 63 chr6 169196642 169197454 -20082100 + L2 LINE L2 1972 2855 -459 223 232 74 74 chr6 169197502 169197597 -20081957 - MER5A DNA MER1_type -94 95 1 23 0 0 0 chr6 169199743 169199766 -20079788 + AT_rich Low_complexity Low_complexity 1 23 0 2113 123 153 76 chr6 169200920 169201457 -20078097 + L1MC3 LINE L1 7198 7775 -10 799 167 0 0 chr6 169201488 169201620 -20077934 - FLAM_C SINE Alu -1 132 1 273 58 58 0 chr6 169201873 169201925 -20077629 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 349 270 142 25 chr6 169202178 169202382 -20077172 - MIR SINE MIR -27 235 8 2014 110 14 0 chr6 169203051 169203360 -20076194 - AluSq SINE Alu 0 313 1 28 29 0 0 chr6 169205468 169205503 -20074051 + AT_rich Low_complexity Low_complexity 1 35 0 183 184 0 0 chr6 169206337 169206375 -20073179 + T-rich Low_complexity Low_complexity 1 38 0 14883 123 15 24 chr6 169208504 169209986 -20069568 + Tigger1 DNA MER2_type 1 1494 -924 2436 83 0 0 chr6 169209986 169210287 -20069267 + AluY SINE Alu 1 301 -10 14883 123 15 24 chr6 169210287 169211127 -20068427 + Tigger1 DNA MER2_type 1494 2304 -114 2465 37 24 0 chr6 169211127 169211422 -20068132 - AluY SINE Alu -9 302 1 14883 123 15 24 chr6 169211422 169211536 -20068018 + Tigger1 DNA MER2_type 2304 2417 -1 315 346 40 30 chr6 169213755 169213957 -20065597 + MIR SINE MIR 2 205 -57 427 258 57 16 chr6 169214163 169214287 -20065267 + L2 LINE L2 3179 3307 -6 2762 133 17 0 chr6 169214906 169215327 -20064227 + MSTA LTR MaLR 1 428 0 252 0 0 0 chr6 169215581 169215609 -20063945 + (TA)n Simple_repeat Simple_repeat 2 29 0 2411 87 0 3 chr6 169215611 169215920 -20063634 - AluSg SINE Alu 0 310 3 326 289 37 7 chr6 169216323 169216458 -20063096 + MER117 DNA MER1_type 44 182 -15 405 261 14 70 chr6 169216580 169216722 -20062832 - MIR SINE MIR -71 137 21 2076 117 0 0 chr6 169217395 169217685 -20061869 + AluSx SINE Alu 1 290 -22 21 57 0 0 chr6 169218177 169218212 -20061342 + AT_rich Low_complexity Low_complexity 1 35 0 546 305 68 11 chr6 169219239 169219416 -20060138 - MER5A DNA MER1_type 0 189 3 1706 178 10 17 chr6 169220501 169220794 -20058760 + AluJo SINE Alu 5 295 -17 198 71 0 0 chr6 169221098 169221126 -20058428 + (TA)n Simple_repeat Simple_repeat 1 28 0 303 169 70 28 chr6 169221130 169221201 -20058353 - L1MCa LINE L1 -4358 2068 1995 203 267 0 0 chr6 169221207 169221267 -20058287 + (TA)n Simple_repeat Simple_repeat 1 60 0 25 0 0 0 chr6 169222193 169222218 -20057336 + AT_rich Low_complexity Low_complexity 1 25 0 189 366 24 12 chr6 169222500 169222582 -20056972 + L2 LINE L2 2409 2491 -823 375 294 0 9 chr6 169223102 169223211 -20056343 - MIR SINE MIR -105 157 50 222 194 30 75 chr6 169223218 169223285 -20056269 - L2 LINE L2 -9 3263 3200 2277 98 0 0 chr6 169225048 169225335 -20054219 - AluSg SINE Alu 0 310 24 226 310 28 14 chr6 169226675 169226746 -20052808 + MIR SINE MIR 104 175 -87 225 319 96 45 chr6 169226934 169227125 -20052429 - MIR3 SINE MIR -63 145 2 22 35 0 0 chr6 169228437 169228466 -20051088 + AT_rich Low_complexity Low_complexity 1 29 0 2011 141 3 3 chr6 169228905 169229231 -20050323 + AluSx SINE Alu 1 312 0 408 272 35 22 chr6 169230017 169230167 -20049387 - MIR SINE MIR -65 143 4 2059 121 7 13 chr6 169230337 169230635 -20048919 + AluSx SINE Alu 1 296 -16 512 311 150 50 chr6 169231366 169231532 -20048022 + L2 LINE L2 1875 2023 -1291 1751 162 31 0 chr6 169231532 169231822 -20047732 - AluJo SINE Alu -13 299 1 512 311 150 50 chr6 169231822 169232461 -20047093 + L2 LINE L2 2023 2761 -553 426 20 0 0 chr6 169232641 169232692 -20046862 + (CA)n Simple_repeat Simple_repeat 2 52 0 2394 80 7 0 chr6 169232892 169233193 -20046361 - AluSg SINE Alu -7 303 1 25 0 0 0 chr6 169236213 169236238 -20043316 + AT_rich Low_complexity Low_complexity 1 25 0 1565 176 3 35 chr6 169236341 169236654 -20042900 + AluJo SINE Alu 1 303 -9 623 282 169 0 chr6 169237360 169237555 -20041999 - MIR SINE MIR -6 256 29 2556 107 6 6 chr6 169237734 169238098 -20041456 + THE1B LTR MaLR 1 364 0 376 359 22 22 chr6 169238591 169238772 -20040782 - MIR3 SINE MIR -8 200 20 3646 118 9 38 chr6 169241346 169241981 -20037573 + L1MA5A LINE L1 5680 6296 -1 26 30 0 0 chr6 169241981 169242014 -20037540 + AT_rich Low_complexity Low_complexity 1 33 0 319 270 29 51 chr6 169242482 169242619 -20036935 + HAL1 LINE L1 1491 1624 -883 218 321 94 0 chr6 169242850 169242956 -20036598 + L2 LINE L2 1860 1975 -1339 1601 195 24 18 chr6 169242972 169243310 -20036244 + MLT1A1 LTR MaLR 21 360 -5 1768 273 177 24 chr6 169243315 169244456 -20035098 + L2 LINE L2 1984 3313 0 873 318 149 31 chr6 169244536 169244939 -20034615 + L1ME LINE L1 4146 4500 -1646 2402 60 0 0 chr6 169244939 169245249 -20034305 + AluY SINE Alu 1 310 0 873 318 149 31 chr6 169245249 169245725 -20033829 + L1ME LINE L1 4500 5130 -1016 23 33 0 0 chr6 169245727 169245757 -20033797 + AT_rich Low_complexity Low_complexity 1 30 0 440 273 125 30 chr6 169245833 169246200 -20033354 + L1ME LINE L1 5258 5659 -503 1767 161 13 82 chr6 169246262 169246642 -20032912 + MLT1A1 LTR MaLR 1 354 -11 2916 191 31 67 chr6 169246649 169247334 -20032220 + MLT1A1-int LTR MaLR 1 660 -1075 279 183 0 33 chr6 169247471 169247531 -20032023 + MLT1A1-int LTR MaLR 679 736 -999 1269 207 22 176 chr6 169247736 169247933 -20031621 + MLT1A1-int LTR MaLR 954 1120 -251 592 26 39 13 chr6 169247933 169248011 -20031543 - MADE1 DNA Mariner 0 80 1 1269 207 22 176 chr6 169248011 169248229 -20031325 + MLT1A1-int LTR MaLR 1120 1370 -1 847 209 21 26 chr6 169248239 169248430 -20031124 + MLT1A1 LTR MaLR 10 199 -166 784 273 41 11 chr6 169248973 169249240 -20030314 - HAL1 LINE L1 -2141 366 92 2241 107 3 0 chr6 169249511 169249811 -20029743 + AluSx SINE Alu 1 301 -11 266 180 16 0 chr6 169250399 169250460 -20029094 + CT-rich Low_complexity Low_complexity 4 65 0 227 286 163 0 chr6 169250479 169250577 -20028977 - L1ME LINE L1 -201 5920 5807 300 27 0 0 chr6 169251439 169251476 -20028078 + (TG)n Simple_repeat Simple_repeat 2 38 0 1919 156 3 3 chr6 169252540 169252842 -20026712 + AluSx SINE Alu 1 302 -10 207 175 0 25 chr6 169253151 169253191 -20026363 + G-rich Low_complexity Low_complexity 2 40 0 206 358 37 0 chr6 169253368 169253449 -20026105 - L2 LINE L2 0 3272 3189 2038 146 0 7 chr6 169253623 169253925 -20025629 - AluSx SINE Alu -12 300 1 389 306 88 9 chr6 169253936 169254152 -20025402 - L1ME4a LINE L1 -210 5911 5679 479 299 43 55 chr6 169254171 169254347 -20025207 + MLT1J LTR MaLR 9 181 -330 557 40 81 0 chr6 169254347 169254421 -20025133 + MADE1 DNA Mariner 1 80 0 479 299 43 55 chr6 169254421 169254569 -20024985 + MLT1J LTR MaLR 181 329 -182 22 56 0 0 chr6 169254733 169254769 -20024785 + AT_rich Low_complexity Low_complexity 1 36 0 2910 230 35 35 chr6 169254775 169255688 -20023866 + L1ME1 LINE L1 5281 6161 -5 465 313 60 34 chr6 169256048 169256281 -20023273 - MIR SINE MIR -12 250 12 230 318 0 0 chr6 169256320 169256383 -20023171 + L2 LINE L2 3247 3309 -4 222 229 21 0 chr6 169258178 169258226 -20021328 - L2 LINE L2 -19 3294 3246 5041 163 19 4 chr6 169258241 169259714 -20019840 + L1MA4A LINE L1 4700 6280 -23 47 44 0 0 chr6 169260235 169260303 -20019251 + AT_rich Low_complexity Low_complexity 1 68 0 190 413 40 0 chr6 169262324 169262399 -20017155 + L2 LINE L2 3109 3186 -86 8592 184 55 61 chr6 169262582 169262849 -20016705 - Charlie5 DNA MER1_type -2 2622 2355 2049 129 0 0 chr6 169262849 169263161 -20016393 - AluSx SINE Alu 0 316 5 8592 184 55 61 chr6 169263161 169265529 -20014025 - Charlie5 DNA MER1_type -269 2355 1 2011 116 7 0 chr6 169266336 169266612 -20012942 - AluSx SINE Alu -32 280 3 2062 117 30 3 chr6 169266859 169267157 -20012397 + AluSq SINE Alu 1 306 -7 1793 161 0 10 chr6 169267159 169267457 -20012097 + AluJo SINE Alu 1 295 -17 222 62 0 0 chr6 169269406 169269438 -20010116 + (TC)n Simple_repeat Simple_repeat 1 32 0 1571 252 102 94 chr6 169269438 169270762 -20008792 + L1MC4a LINE L1 5347 6681 -1127 1159 252 136 53 chr6 169270771 169270942 -20008612 + L1MC4 LINE L1 6855 7010 -1032 2078 124 3 0 chr6 169270942 169271251 -20008303 + AluSp SINE Alu 1 310 0 1159 252 136 53 chr6 169271251 169271836 -20007718 + L1MC4 LINE L1 7010 7675 -367 1368 306 34 24 chr6 169271912 169272494 -20007060 - MER20B DNA MER1_type -107 676 89 642 255 91 3 chr6 169272504 169272872 -20006682 - LTR16A LTR ERVL -21 429 23 2000 229 100 30 chr6 169273274 169273473 -20006081 - MER82 DNA MER2_type -21 632 448 2538 47 0 0 chr6 169273473 169273774 -20005780 + AluY SINE Alu 3 303 -8 2000 229 100 30 chr6 169273774 169274142 -20005412 - MER82 DNA MER2_type -205 448 25 1849 253 74 63 chr6 169274181 169274360 -20005194 + L1ME3A LINE L1 4161 4337 -1833 1001 95 0 7 chr6 169274360 169274507 -20005047 + L1PB1 LINE L1 6006 6151 0 1849 253 74 63 chr6 169274507 169276326 -20003228 + L1ME3A LINE L1 4337 6168 -2 858 260 29 103 chr6 169277076 169277592 -20001962 - L2 LINE L2 -1 3312 2835 14473 133 13 25 chr6 169277592 169280428 -19999126 + L1P4 LINE L1 2752 5543 -625 * 22288 99 16 11 chr6 169280424 169283876 -19995678 + L1P LINE L1 74 3543 -2603 3888 40 6 0 chr6 169283876 169284345 -19995209 + L1PA6 LINE L1 5679 6154 0 660 116 0 0 chr6 169284354 169284449 -19995105 + AluSc SINE Alu 202 296 -13 1409 181 132 38 chr6 169284981 169285407 -19994147 + MER31B LTR ERV1 1 466 0 201 343 45 30 chr6 169286467 169286534 -19993020 + L2 LINE L2 3121 3188 -84 302 276 87 0 chr6 169286621 169286748 -19992806 + LTR50 LTR ERVL 504 641 -154 1254 189 15 105 chr6 169286750 169287142 -19992412 + MLT1A1 LTR MaLR 3 359 -6 317 132 103 0 chr6 169287198 169287266 -19992288 + LTR50 LTR ERVL 717 791 -4 366 310 74 97 chr6 169288389 169288647 -19990907 - L2 LINE L2 -6 3266 3015 252 331 53 30 chr6 169288799 169288932 -19990622 + MER5A DNA MER1_type 7 142 -47 180 0 0 0 chr6 169289251 169289271 -19990283 + (TG)n Simple_repeat Simple_repeat 2 21 0 2048 125 0 30 chr6 169289271 169289566 -19989988 - AluSx SINE Alu -26 286 1 519 113 0 0 chr6 169289744 169289824 -19989730 - MADE1 DNA Mariner 0 80 1 268 303 78 35 chr6 169289825 169289967 -19989587 + MER5B DNA MER1_type 28 175 -3 746 185 0 0 chr6 169290282 169290412 -19989142 - MLT1A1 LTR MaLR 0 365 236 386 140 47 84 chr6 169290437 169290544 -19989010 - MLT1A1 LTR MaLR -262 103 1 335 278 41 0 chr6 169291450 169291547 -19988007 - MIR SINE MIR -128 134 34 248 250 0 0 chr6 169292206 169292270 -19987284 + (TA)n Simple_repeat Simple_repeat 2 65 0 1815 134 44 4 chr6 169292566 169292863 -19986691 + AluSx SINE Alu 5 312 0 186 106 64 0 chr6 169293491 169293538 -19986016 + (CA)n Simple_repeat Simple_repeat 1 50 0 22 56 0 0 chr6 169294087 169294123 -19985431 + AT_rich Low_complexity Low_complexity 1 36 0 217 319 0 14 chr6 169294400 169294469 -19985085 + (CACG)n Simple_repeat Simple_repeat 3 70 0 292 80 40 0 chr6 169295456 169295506 -19984048 + MADE1 DNA Mariner 1 52 -28 2302 100 0 7 chr6 169297199 169297499 -19982055 + AluSq SINE Alu 1 298 -15 3117 199 7 14 chr6 169297766 169298463 -19981091 - L1P LINE L1 -1696 4450 3759 234 192 0 0 chr6 169298690 169298742 -19980812 + A-rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr6 169299576 169299598 -19979956 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 169301009 169301030 -19978524 + AT_rich Low_complexity Low_complexity 1 21 0 478 294 126 7 chr6 169301068 169301377 -19978177 - HAL1 LINE L1 -12 2495 2150 404 270 84 48 chr6 169301437 169301770 -19977784 - HAL1 LINE L1 -482 2025 1681 807 303 99 18 chr6 169301798 169302514 -19977040 - HAL1 LINE L1 -986 1521 748 714 331 8 4 chr6 169302654 169302914 -19976640 - ERVL LTR ERVL -5090 674 414 1771 289 81 9 chr6 169303240 169303824 -19975730 - MLT2E LTR ERVL -2 626 1 26 0 0 0 chr6 169304093 169304119 -19975435 + AT_rich Low_complexity Low_complexity 1 26 0 2037 103 17 14 chr6 169304279 169304569 -19974985 - AluSx SINE Alu -21 291 1 287 374 9 0 chr6 169306042 169306149 -19973405 + L2 LINE L2 3205 3312 -1 31 44 0 0 chr6 169306330 169306375 -19973179 + AT_rich Low_complexity Low_complexity 1 45 0 5255 143 10 0 chr6 169306375 169307409 -19972145 - L1PA15 LINE L1 -13 6803 5755 2866 77 2 129 chr6 169307413 169307932 -19971622 + MLT2A2 LTR ERVL 1 453 0 12720 222 17 45 chr6 169307942 169310036 -19969518 - L1PA15 LINE L1 -1052 5745 3592 680 208 0 0 chr6 169310036 169310156 -19969398 + FLAM_C SINE Alu 12 131 -12 12720 222 17 45 chr6 169310156 169311675 -19967879 - L1PA15 LINE L1 -3205 3592 2119 1908 157 3 10 chr6 169311675 169311975 -19967579 - AluSx SINE Alu -11 301 4 12720 222 17 45 chr6 169311975 169312000 -19967554 - L1PA15 LINE L1 -4678 2119 2095 2416 271 49 18 chr6 169311992 169312817 -19966737 - L1PA15 LINE L1 -4894 1893 700 * 25 65 0 0 chr6 169313260 169313306 -19966248 + AT_rich Low_complexity Low_complexity 1 46 0 2108 178 53 86 chr6 169314050 169314277 -19965277 + MER67C LTR ERV1 3 236 -474 4354 92 5 23 chr6 169314277 169314625 -19964929 + L1PB1 LINE L1 5519 5852 -299 2157 117 0 0 chr6 169314625 169314939 -19964615 - AluSx SINE Alu 0 314 1 4354 92 5 23 chr6 169314939 169315229 -19964325 + L1PB1 LINE L1 5852 6146 -5 2108 178 53 86 chr6 169315229 169315699 -19963855 + MER67C LTR ERV1 236 678 -32 2312 144 2 15 chr6 169315699 169316094 -19963460 + MLT1B LTR MaLR 1 390 0 2108 178 53 86 chr6 169316094 169316113 -19963441 + MER67C LTR ERV1 678 696 -14 234 354 62 17 chr6 169316171 169316349 -19963205 - L2 LINE L2 0 3313 3128 * 318 356 42 0 chr6 169316319 169316437 -19963117 + L2 LINE L2 3189 3311 -2 2004 122 12 9 chr6 169316492 169316811 -19962743 - THE1C LTR MaLR 0 375 56 604 202 8 8 chr6 169318409 169318528 -19961026 - FLAM_A SINE Alu -11 122 4 373 230 0 20 chr6 169319171 169319271 -19960283 - LTR33 LTR ERVL -3 518 421 314 302 0 0 chr6 169319397 169319493 -19960061 - LTR33 LTR ERVL -326 195 100 180 77 0 0 chr6 169319524 169319550 -19960004 + (CAGAG)n Simple_repeat Simple_repeat 2 27 0 2029 141 72 23 chr6 169319563 169319910 -19959644 + THE1B LTR MaLR 1 364 0 2648 49 0 0 chr6 169319929 169320234 -19959320 + AluY SINE Alu 1 305 -6 680 315 47 26 chr6 169320248 169320635 -19958919 - LTR16A LTR ERVL 0 450 56 5068 46 3 0 chr6 169321271 169321885 -19957669 - L1PA4 LINE L1 0 6155 5540 2192 106 0 13 chr6 169322500 169322802 -19956752 + AluSx SINE Alu 2 299 -13 197 259 19 19 chr6 169323078 169323132 -19956422 + MIR SINE MIR 5 58 -204 1078 191 75 51 chr6 169323181 169323516 -19956038 + L1MCa LINE L1 19 361 -6065 605 347 17 14 chr6 169323915 169324275 -19955279 + L1MCa LINE L1 245 605 -6002 2201 114 0 0 chr6 169324319 169324609 -19954945 + AluSq SINE Alu 10 299 -14 1844 160 18 49 chr6 169324743 169325130 -19954424 + THE1C LTR MaLR 1 375 0 33 56 0 0 chr6 169326118 169326172 -19953382 + AT_rich Low_complexity Low_complexity 1 54 0 405 310 84 13 chr6 169326226 169326381 -19953173 + MIR SINE MIR 2 167 -95 2250 126 0 0 chr6 169326390 169326692 -19952862 + AluSq SINE Alu 1 302 -11 1381 186 34 93 chr6 169326786 169327226 -19952328 - LTR47B LTR ERVL -29 414 1 1876 161 13 10 chr6 169327491 169327796 -19951758 - AluJb SINE Alu -6 306 1 4604 172 24 19 chr6 169328069 169328816 -19950738 + L1MB1 LINE L1 4866 5624 -544 2122 135 27 0 chr6 169328816 169329113 -19950441 + AluSx SINE Alu 1 305 -7 4604 172 24 19 chr6 169329113 169329661 -19949893 + L1MB1 LINE L1 5624 6168 0 1446 219 47 26 chr6 169329661 169330045 -19949509 + LTR55 LTR ERV 136 527 -21 256 333 51 0 chr6 169330819 169330897 -19948657 + L2 LINE L2 3144 3225 -47 201 356 23 0 chr6 169331156 169331243 -19948311 - L2 LINE L2 0 3272 3184 792 333 53 15 chr6 169332250 169332757 -19946797 + L2 LINE L2 2727 3251 -62 195 329 185 14 chr6 169332798 169332944 -19946610 - L3b LINE CR1 -103 1480 1310 2254 112 7 0 chr6 169333108 169333413 -19946141 - AluSc SINE Alu 0 309 3 961 81 20 0 chr6 169333417 169333565 -19945989 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1946 115 26 0 chr6 169333565 169333835 -19945719 - AluSc SINE Alu -32 277 1 1917 116 94 0 chr6 169334602 169334877 -19944677 - AluSg SINE Alu -9 301 1 432 200 56 0 chr6 169335953 169336043 -19943511 + L2 LINE L2 3214 3308 -5 189 74 0 0 chr6 169336505 169336532 -19943022 + (CAT)n Simple_repeat Simple_repeat 1 27 0 2420 64 0 3 chr6 169336961 169337257 -19942297 - AluY SINE Alu -16 295 1 360 250 173 0 chr6 169337287 169337391 -19942163 + L2 LINE L2 3192 3313 0 2197 105 3 3 chr6 169337406 169337712 -19941842 + AluSg SINE Alu 2 307 -3 206 318 27 18 chr6 169338174 169338284 -19941270 + L2 LINE L2 2872 2982 -290 432 252 0 0 chr6 169338288 169338395 -19941159 - L1MA10 LINE L1 -11 6323 6217 348 143 13 65 chr6 169338439 169338516 -19941038 - L1MA10 LINE L1 -114 6220 6148 1167 187 14 0 chr6 169339572 169339791 -19939763 + MLT1A1-int LTR MaLR 1514 1735 0 1365 204 42 34 chr6 169339800 169340153 -19939401 + MLT1A1 LTR MaLR 10 365 0 1634 176 50 23 chr6 169340548 169340850 -19938704 + AluJo SINE Alu 1 310 -2 991 85 30 0 chr6 169340944 169341109 -19938445 + (TA)n Simple_repeat Simple_repeat 1 170 0 318 50 0 0 chr6 169341123 169341163 -19938391 + (TA)n Simple_repeat Simple_repeat 1 40 0 1964 128 3 3 chr6 169341399 169341724 -19937830 + AluSx SINE Alu 1 325 0 921 307 124 32 chr6 169342926 169343515 -19936039 + L3 LINE CR1 752 1394 -183 405 0 0 0 chr6 169343869 169343914 -19935640 + (TG)n Simple_repeat Simple_repeat 2 46 0 31 0 0 0 chr6 169344211 169344242 -19935312 + AT_rich Low_complexity Low_complexity 1 31 0 499 313 42 58 chr6 169344471 169344564 -19934990 + MIR SINE MIR 5 98 -164 3190 130 84 0 chr6 169344564 169345050 -19934504 - MER1A DNA MER1_type 0 527 1 499 313 42 58 chr6 169345050 169345215 -19934339 + MIR SINE MIR 98 259 -3 420 286 123 19 chr6 169346491 169346645 -19932909 + MIR SINE MIR 22 191 -71 384 208 17 33 chr6 169346909 169347006 -19932548 + MER5A DNA MER1_type 4 98 -91 181 355 73 45 chr6 169347259 169347369 -19932185 + L2 LINE L2 3044 3156 -116 241 300 62 75 chr6 169347422 169347582 -19931972 + L2 LINE L2 3028 3185 -87 3849 207 29 29 chr6 169349090 169349995 -19929559 + L1M1 LINE L1 16 920 -6645 * 8289 100 32 17 chr6 169349993 169351379 -19928175 + L1M1 LINE L1 1846 3253 -4312 281 104 42 0 chr6 169351379 169351427 -19928127 + Alu SINE Alu 1 50 -251 486 95 14 0 chr6 169351528 169351602 -19927952 + MLT1A1 LTR MaLR 291 365 0 314 295 119 92 chr6 169352327 169352774 -19926780 - L1M2 LINE L1 -5514 1335 877 233 215 0 31 chr6 169352774 169352839 -19926715 + C-rich Low_complexity Low_complexity 2 64 0 309 258 100 109 chr6 169353086 169353408 -19926146 - L1M2 LINE L1 -5723 1126 580 297 75 0 0 chr6 169353571 169353611 -19925943 + (TG)n Simple_repeat Simple_repeat 2 41 0 185 0 0 39 chr6 169355354 169355380 -19924174 + (TAA)n Simple_repeat Simple_repeat 3 27 0 217 286 32 0 chr6 169356122 169356185 -19923369 + L2 LINE L2 3208 3272 0 461 319 100 19 chr6 169356466 169356676 -19922878 + MIR SINE MIR 17 243 -19 2101 125 3 18 chr6 169356790 169357126 -19922428 + MER1B DNA MER1_type 1 331 -8 320 345 103 11 chr6 169357355 169357529 -19922025 - L1MC/D LINE L1 -2305 5503 5314 1675 134 87 4 chr6 169358219 169358495 -19921059 - AluJb SINE Alu -13 299 1 235 186 0 22 chr6 169359436 169359485 -19920069 + MIR SINE MIR 103 146 -62 280 313 83 0 chr6 169359749 169359845 -19919709 - L2 LINE L2 -13 3259 3156 201 283 166 64 chr6 169363501 169363844 -19915710 - L2 LINE L2 -649 2665 2288 290 360 22 43 chr6 169363885 169364024 -19915530 + L3 LINE CR1 971 1106 -471 2262 91 3 10 chr6 169364374 169364672 -19914882 - AluSq SINE Alu -17 296 1 414 335 108 6 chr6 169364673 169364849 -19914705 + L3 LINE CR1 1372 1565 -12 270 206 0 0 chr6 169365045 169365108 -19914446 + (CATA)n Simple_repeat Simple_repeat 2 64 0 217 275 83 33 chr6 169365229 169365349 -19914205 - L2 LINE L2 -1318 1996 1871 338 306 113 36 chr6 169365960 169366235 -19913319 + L2 LINE L2 2909 3204 -109 2082 120 3 29 chr6 169366635 169366985 -19912569 + THE1C LTR MaLR 1 341 -34 29751 106 11 57 chr6 169366994 169373438 -19906116 - L1PA7 LINE L1 0 6154 12 278 146 0 21 chr6 169373438 169373486 -19906068 + THE1C LTR MaLR 382 428 0 357 24 0 0 chr6 169373625 169373667 -19905887 + (TG)n Simple_repeat Simple_repeat 2 43 0 444 211 10 19 chr6 169375058 169375162 -19904392 - L2 LINE L2 -5 3308 3206 22 0 0 0 chr6 169376418 169376440 -19903114 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr6 169376619 169376661 -19902893 + AT_rich Low_complexity Low_complexity 1 42 0 2276 92 0 3 chr6 169376744 169377037 -19902517 - AluSq SINE Alu -21 292 1 1984 113 36 4 chr6 169377154 169377428 -19902126 + AluSq SINE Alu 1 283 -30 360 352 110 22 chr6 169377952 169378514 -19901040 + L2 LINE L2 2454 3059 -213 28 0 0 0 chr6 169378625 169378653 -19900901 + AT_rich Low_complexity Low_complexity 1 28 0 191 195 0 49 chr6 169378704 169378745 -19900809 + L2 LINE L2 3263 3301 -12 518 297 53 30 chr6 169378950 169379240 -19900314 + L2 LINE L2 2756 3050 -263 645 75 0 11 chr6 169379240 169379333 -19900221 - AluY SINE Alu -6 305 214 371 305 11 0 chr6 169379418 169379513 -19900041 + L2 LINE L2 3218 3313 0 366 306 22 52 chr6 169379644 169379778 -19899776 + MIR SINE MIR 32 161 -101 220 267 0 0 chr6 169379928 169379973 -19899581 + MIR SINE MIR 49 93 -169 293 214 118 0 chr6 169380056 169380141 -19899413 + HsTC2 DNA Tc2 2 1814 -84 675 135 214 14 chr6 169381436 169381612 -19897942 - THE1C LTR MaLR -214 212 1 1930 156 121 23 chr6 169382095 169382485 -19897069 - MSTA LTR MaLR 0 428 1 1109 197 12 33 chr6 169382648 169382892 -19896662 + MER8 DNA MER2_type 1 239 0 198 367 94 31 chr6 169382903 169383001 -19896553 + MIR SINE MIR 25 134 -128 2141 160 36 0 chr6 169383001 169383389 -19896165 - MER57A LTR ERV1 0 403 2 198 367 94 31 chr6 169383389 169383418 -19896136 + MIR SINE MIR 134 160 -102 400 206 0 28 chr6 169383545 169383652 -19895902 - L1MA5 LINE L1 0 6300 6197 457 296 51 58 chr6 169384210 169384448 -19895106 - MIR SINE MIR -18 244 11 939 315 131 45 chr6 169385794 169386616 -19892938 + L2 LINE L2 116 1008 -2306 893 113 30 0 chr6 169386665 169386798 -19892756 + AluSg/x SINE Alu 176 312 0 257 302 19 47 chr6 169387486 169387592 -19891962 - MIR3 SINE MIR -24 184 82 372 266 156 32 chr6 169387634 169387863 -19891691 - MIR SINE MIR -7 255 3 21 36 0 0 chr6 169388613 169388641 -19890913 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr6 169389172 169389214 -19890340 + AT_rich Low_complexity Low_complexity 1 42 0 1898 135 7 11 chr6 169389724 169390006 -19889548 + AluSx SINE Alu 15 295 -17 424 317 50 44 chr6 169390103 169390310 -19889244 - MIR3 SINE MIR -52 210 5 1891 113 0 119 chr6 169392276 169392613 -19886941 + AluSx SINE Alu 1 297 -15 444 100 133 44 chr6 169393158 169393248 -19886306 - Tigger7 DNA MER2_type 0 2487 2390 1365 175 56 24 chr6 169393276 169393443 -19886111 - Tigger7 DNA MER2_type -466 267 88 1622 165 6 51 chr6 169393443 169393758 -19885796 - AluJo SINE Alu -11 301 1 1365 175 56 24 chr6 169393758 169393841 -19885713 - Tigger7 DNA MER2_type -645 88 9 27 29 0 0 chr6 169394258 169394292 -19885262 + AT_rich Low_complexity Low_complexity 1 34 0 237 108 0 0 chr6 169394834 169394871 -19884683 + (TA)n Simple_repeat Simple_repeat 2 38 0 1544 250 97 34 chr6 169395724 169396248 -19883306 - MLT1F1 LTR MaLR 0 567 12 356 286 12 94 chr6 169396399 169396570 -19882984 - MLT1F1-int LTR MaLR -233 1138 982 2153 95 25 0 chr6 169396792 169397088 -19882466 - AluSx SINE Alu 0 303 1 452 268 0 59 chr6 169397338 169397491 -19882063 + MIR SINE MIR 82 225 -37 23 54 0 0 chr6 169397971 169398008 -19881546 + AT_rich Low_complexity Low_complexity 1 37 0 235 239 0 0 chr6 169398549 169398595 -19880959 - MER5C DNA MER1_type -248 76 31 200 382 24 8 chr6 169398670 169398793 -19880761 + MIR3 SINE MIR 52 176 -32 306 345 56 22 chr6 169399463 169399695 -19879859 + L2 LINE L2 1687 1926 -1388 378 310 82 6 chr6 169399723 169399894 -19879660 - LTR67 LTR ERVL -32 525 342 1763 303 101 35 chr6 169400895 169402436 -19877118 + L1MEc LINE L1 331 1972 -4424 3365 252 105 54 chr6 169402437 169403809 -19875745 + L1MEc LINE L1 2158 3459 -2756 2338 97 0 0 chr6 169403809 169404118 -19875436 + AluSc SINE Alu 1 309 0 3365 252 105 54 chr6 169404118 169404711 -19874843 + L1MEc LINE L1 3459 4205 -2010 2130 125 3 0 chr6 169404711 169405006 -19874548 + AluSx SINE Alu 1 296 -16 3365 252 105 54 chr6 169405006 169405314 -19874240 + L1MEc LINE L1 4205 4496 -1719 1262 137 78 19 chr6 169405332 169405603 -19873951 + MER45R DNA AcHobo 1189 1475 -106 1046 224 106 11 chr6 169405604 169405920 -19873634 + L1MEc LINE L1 4505 4864 -1351 2062 125 17 0 chr6 169405920 169406216 -19873338 + AluSx SINE Alu 1 301 -11 1046 224 106 11 chr6 169406216 169406278 -19873276 + L1MEc LINE L1 4864 4919 -1296 23 0 0 0 chr6 169406315 169406338 -19873216 + AT_rich Low_complexity Low_complexity 1 23 0 385 231 60 69 chr6 169406579 169406763 -19872791 - L1MC4 LINE L1 -95 7713 7577 314 303 26 0 chr6 169406834 169406986 -19872568 - L1MC5 LINE L1 -520 7441 7286 * 1543 280 161 46 chr6 169406953 169408415 -19871139 - L1MC4 LINE L1 -400 7488 5779 588 268 118 46 chr6 169410206 169410661 -19868893 + LTR33 LTR ERVL 4 519 -2 326 303 152 18 chr6 169411497 169411662 -19867892 + MIR SINE MIR 20 206 -56 361 220 124 62 chr6 169412070 169412247 -19867307 - MIR SINE MIR -10 252 65 1089 181 68 78 chr6 169412341 169412650 -19866904 + MER5C DNA MER1_type 5 310 -14 226 172 32 75 chr6 169412863 169412956 -19866598 + L1MC4 LINE L1 6614 6702 -1340 231 280 0 0 chr6 169412958 169413051 -19866503 + (TA)n Simple_repeat Simple_repeat 2 94 0 230 297 0 22 chr6 169413054 169413145 -19866409 + L1MC4 LINE L1 6614 6702 -1340 427 145 16 48 chr6 169413176 169413300 -19866254 + (TATATG)n Simple_repeat Simple_repeat 6 125 0 238 256 47 0 chr6 169413300 169413386 -19866168 - L1MC4 LINE L1 -1339 6703 6614 261 0 0 0 chr6 169413386 169413415 -19866139 + (CA)n Simple_repeat Simple_repeat 2 30 0 326 260 27 3 chr6 169413456 169413535 -19866019 + MER2 DNA MER2_type 12 89 -150 263 241 19 0 chr6 169413582 169413636 -19865918 + MER2 DNA MER2_type 290 344 -1 15305 151 15 28 chr6 169414289 169414317 -19865237 - L1MA2 LINE L1 0 7723 7696 288 0 0 0 chr6 169414317 169414349 -19865205 + (CA)n Simple_repeat Simple_repeat 2 33 0 15305 151 15 28 chr6 169414349 169415630 -19863924 - L1MA2 LINE L1 -27 7696 6400 2026 119 0 7 chr6 169415630 169415916 -19863638 - AluSx SINE Alu -18 294 11 15305 151 15 28 chr6 169415916 169417024 -19862530 - L1MA2 LINE L1 -1323 6400 5279 2359 85 3 0 chr6 169417024 169417329 -19862225 - AluY SINE Alu -5 306 1 15305 151 15 28 chr6 169417329 169419447 -19860107 - L1MA2 LINE L1 -2444 5279 3252 2283 99 0 0 chr6 169419447 169419740 -19859814 - AluY SINE Alu -18 293 1 15305 151 15 28 chr6 169419740 169419919 -19859635 - L1MA2 LINE L1 -4471 3252 3072 2136 172 3 8 chr6 169420876 169421243 -19858311 - MLT1A1 LTR MaLR 0 365 1 218 262 71 24 chr6 169421312 169421396 -19858158 + L2 LINE L2 2227 2314 -1000 419 282 27 0 chr6 169421410 169421520 -19858034 - MIR SINE MIR -5 257 145 691 275 163 17 chr6 169421520 169421815 -19857739 + L2 LINE L2 2316 2653 -661 4470 139 77 73 chr6 169421842 169423219 -19856335 + pTR5 LTR ERV1 743 2438 0 627 346 88 60 chr6 169423219 169423256 -19856298 + L2 LINE L2 2677 2711 -602 2319 88 10 0 chr6 169423256 169423564 -19855990 + AluY SINE Alu 1 311 0 627 346 88 60 chr6 169423564 169424122 -19855432 + L2 LINE L2 2711 3294 -19 2429 172 37 5 chr6 169424712 169425143 -19854411 + MSTB2 LTR MaLR 13 457 0 2139 114 16 0 chr6 169426138 169426445 -19853109 - AluSp SINE Alu -1 312 1 385 19 37 0 chr6 169427168 169427222 -19852332 + (CA)n Simple_repeat Simple_repeat 1 56 0 198 191 0 0 chr6 169427332 169427374 -19852180 + (CATA)n Simple_repeat Simple_repeat 3 44 0 1123 266 86 78 chr6 169427484 169428386 -19851168 - L2 LINE L2 -1 3312 2435 574 290 76 17 chr6 169429329 169429567 -19849987 + MIR SINE MIR 1 252 -10 388 313 66 62 chr6 169429664 169429891 -19849663 + L2 LINE L2 3039 3266 -6 2083 106 3 0 chr6 169430176 169430458 -19849096 + AluSx SINE Alu 2 284 -28 194 0 61 30 chr6 169430458 169430491 -19849063 + (CAAAA)n Simple_repeat Simple_repeat 2 180 0 1991 96 75 0 chr6 169430565 169430846 -19848708 + AluSx SINE Alu 1 302 -10 203 289 0 0 chr6 169431008 169431060 -19848494 + L2 LINE L2 2934 2985 -287 364 254 55 9 chr6 169431148 169431258 -19848296 - MIR SINE MIR -11 251 137 22 0 0 0 chr6 169432403 169432425 -19847129 + AT_rich Low_complexity Low_complexity 1 22 0 966 209 41 0 chr6 169432435 169432607 -19846947 + AluJo SINE Alu 5 183 -129 22 88 0 0 chr6 169432636 169432693 -19846861 + AT_rich Low_complexity Low_complexity 1 57 0 257 91 68 0 chr6 169432699 169432743 -19846811 - L1PBa LINE L1 -4018 2845 2799 9234 110 16 4 chr6 169432745 169434683 -19844871 - L1PBa LINE L1 -4120 2743 636 997 190 5 0 chr6 169434684 169434879 -19844675 - L1PBa LINE L1 -6662 201 6 1845 198 44 73 chr6 169434923 169435443 -19844111 + MLT1D LTR MaLR 1 505 0 6255 216 9 8 chr6 169435684 169437199 -19842355 + L1 LINE L1 2128 3643 -2503 594 82 0 51 chr6 169437202 169437300 -19842254 - L1PB1 LINE L1 -244 5907 5815 935 217 3 89 chr6 169437443 169437756 -19841798 - L1P LINE L1 -2500 3646 3361 970 164 45 6 chr6 169437756 169437933 -19841621 - MSTB1 LTR MaLR -179 253 70 805 249 10 5 chr6 169437950 169438159 -19841395 + Tigger5 DNA MER2_type 674 883 -1440 1937 173 47 6 chr6 169438183 169438542 -19841012 - MSTB LTR MaLR -8 418 45 1606 147 51 16 chr6 169438539 169438851 -19840703 + LTR18B LTR ERVL 292 614 0 * 1443 148 15 7 chr6 169438872 169439143 -19840411 + HERVL18 LTR ERVL 19 291 -5756 725 237 12 0 chr6 169439143 169439316 -19840238 + HERVL18 LTR ERVL 492 666 -5381 1074 177 6 13 chr6 169439344 169439706 -19839848 + HERVL18 LTR ERVL 1388 1810 -4237 594 177 17 9 chr6 169439705 169439932 -19839622 + HERVL18 LTR ERVL 2119 2452 -3595 * 903 176 0 2 chr6 169439931 169440126 -19839428 + HERVL18 LTR ERVL 2720 2959 -3088 3044 176 25 2 chr6 169440175 169440703 -19838851 + HERVL18 LTR ERVL 2952 3491 -2556 3931 121 30 15 chr6 169440904 169441509 -19838045 + LTR18B LTR ERVL 1 614 0 330 308 39 31 chr6 169441534 169441664 -19837890 - HAL1b LINE L1 -1110 238 108 1840 192 144 9 chr6 169441667 169442110 -19837444 - MLT1D LTR MaLR 0 505 3 180 0 0 0 chr6 169442490 169442510 -19837044 + (T)n Simple_repeat Simple_repeat 1 20 0 2328 91 0 13 chr6 169442708 169443016 -19836538 + AluSg SINE Alu 1 304 -6 406 230 103 0 chr6 169443177 169443303 -19836251 - L1MA9 LINE L1 -38 6274 6136 216 0 0 0 chr6 169443621 169443645 -19835909 + (T)n Simple_repeat Simple_repeat 1 24 0 1049 299 72 0 chr6 169443921 169444242 -19835312 - L2 LINE L2 -598 2716 2373 285 266 26 18 chr6 169444441 169444554 -19835000 + CT-rich Low_complexity Low_complexity 3 116 0 325 273 10 10 chr6 169444554 169444653 -19834901 - MLT1J2 LTR MaLR -284 166 68 456 318 149 19 chr6 169444653 169445019 -19834535 - L1 LINE L1 -767 5379 4978 388 293 40 12 chr6 169445262 169445515 -19834039 - L1 LINE L1 -1487 4659 4400 220 193 35 35 chr6 169445710 169445767 -19833787 + MIR SINE MIR 196 252 -10 501 304 52 45 chr6 169446546 169446927 -19832627 - ERVL LTR ERVL -350 5414 5031 525 294 52 67 chr6 169446951 169447183 -19832371 - ERVL LTR ERVL -1954 3810 3576 2035 131 27 56 chr6 169447183 169447558 -19831996 + THE1B LTR MaLR 1 364 0 525 294 52 67 chr6 169447558 169447805 -19831749 - ERVL LTR ERVL -2188 3576 3338 568 133 0 0 chr6 169447806 169447896 -19831658 - 5S rRNA rRNA -31 90 1 1931 142 0 3 chr6 169447939 169448228 -19831326 + AluJb SINE Alu 21 308 -4 576 275 85 11 chr6 169448343 169448784 -19830770 + MLT1G1 LTR MaLR 6 592 -3 640 321 57 32 chr6 169448855 169449226 -19830328 - ERVL LTR ERVL -2566 3088 2709 22 0 0 0 chr6 169449683 169449705 -19829849 + AT_rich Low_complexity Low_complexity 1 22 0 2270 130 25 0 chr6 169449788 169450141 -19829413 + THE1B LTR MaLR 3 364 0 1227 224 12 29 chr6 169452626 169452969 -19826585 + L1M3 LINE L1 5402 5738 -442 1750 57 0 9 chr6 169453561 169453788 -19825766 + L1PA8 LINE L1 5944 6168 -4 2797 96 0 0 chr6 169453934 169454298 -19825256 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr6 169455917 169455939 -19823615 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr6 169457195 169457225 -19822329 + AT_rich Low_complexity Low_complexity 1 30 0 392 322 82 85 chr6 169457898 169458590 -19820964 - L2 LINE L2 -1 3271 2587 2245 113 0 22 chr6 169459910 169460228 -19819326 + AluSx SINE Alu 1 311 -1 372 327 20 0 chr6 169460432 169460582 -19818972 - L2 LINE L2 -1004 2310 2158 202 227 0 45 chr6 169460609 169460675 -19818879 + (TG)n Simple_repeat Simple_repeat 2 64 0 201 74 0 0 chr6 169462024 169462051 -19817503 + (TTC)n Simple_repeat Simple_repeat 2 28 0 2331 70 0 3 chr6 169462118 169462419 -19817135 + AluY SINE Alu 1 300 -11 462 231 83 0 chr6 169463713 169463821 -19815733 + MIR SINE MIR 51 167 -95 260 213 113 0 chr6 169463886 169463966 -19815588 + MIR SINE MIR 173 261 -1 196 274 41 27 chr6 169464292 169464365 -19815189 - MIR SINE MIR -115 147 74 2286 127 0 0 chr6 169465725 169466033 -19813521 - AluSx SINE Alu -4 308 1 264 319 62 28 chr6 169468109 169468253 -19811301 - L2 LINE L2 -1 3312 3164 2192 108 4 0 chr6 169468639 169468952 -19810602 - AluSp SINE Alu 0 318 5 282 29 0 0 chr6 169470051 169470086 -19809468 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 488 300 107 30 chr6 169470459 169470692 -19808862 - MIR SINE MIR -10 252 2 595 311 94 30 chr6 169471216 169471544 -19808010 - L2 LINE L2 -37 3276 2928 687 247 23 0 chr6 169471593 169471767 -19807787 - L2 LINE L2 -1853 1461 1284 1875 169 43 13 chr6 169471772 169472145 -19807409 - MLT1B LTR MaLR -6 384 1 186 118 0 0 chr6 169472388 169472422 -19807132 + (A)n Simple_repeat Simple_repeat 1 34 0 4777 157 63 14 chr6 169473693 169474167 -19805387 - L1MA6 LINE L1 -9 6291 5842 2215 52 11 4 chr6 169474167 169474436 -19805118 - AluY SINE Alu -7 304 34 4777 157 63 14 chr6 169474436 169475461 -19804093 - L1MA6 LINE L1 -458 5842 4714 516 182 106 10 chr6 169475464 169475662 -19803892 + L1 LINE L1 3088 3304 -2842 231 36 0 0 chr6 169475782 169475810 -19803744 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 2027 164 12 16 chr6 169475816 169476242 -19803312 + L1 LINE L1 3314 3737 -2409 185 62 0 31 chr6 169476250 169476282 -19803272 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 7215 24 0 0 chr6 169476282 169477359 -19802195 - L1PA3 LINE L1 -24 6131 5055 4640 163 28 20 chr6 169477359 169478333 -19801221 + L1 LINE L1 3727 4707 -1439 256 303 88 29 chr6 169479370 169479644 -19799910 + L1ME4a LINE L1 5603 5892 -229 316 273 68 38 chr6 169479687 169479819 -19799735 + L1ME4a LINE L1 5979 6114 -7 2225 146 77 20 chr6 169480049 169480454 -19799100 - MSTA LTR MaLR 0 428 1 240 35 0 0 chr6 169480756 169480785 -19798769 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 282 250 91 0 chr6 169481464 169481552 -19798002 - MER94 DNA DNA -38 96 1 1866 191 40 29 chr6 169481553 169482090 -19797464 + MLT2A2 LTR ERVL 1 552 -2 1494 198 68 10 chr6 169483335 169483628 -19795926 + MLT1A1 LTR MaLR 53 362 -3 1637 182 31 20 chr6 169483669 169484021 -19795533 + MER63B DNA MER1_type 1 356 -80 7712 25 0 0 chr6 169484243 169485221 -19794333 + L1PA4 LINE L1 5178 6155 0 451 247 0 0 chr6 169485242 169485335 -19794219 + MER63B DNA MER1_type 341 433 -2 426 272 0 29 chr6 169485356 169485459 -19794095 + MER5A DNA MER1_type 6 105 -84 2194 97 13 13 chr6 169486078 169486389 -19793165 - AluSp SINE Alu -2 311 1 1732 308 43 35 chr6 169486407 169486870 -19792684 + ERVL LTR ERVL 4064 4537 -1227 2178 102 3 0 chr6 169486870 169487164 -19792390 - AluSq SINE Alu -13 300 6 1732 308 43 35 chr6 169487164 169487444 -19792110 + ERVL LTR ERVL 4537 4813 -951 554 209 64 48 chr6 169487502 169487689 -19791865 + LTR41 LTR ERVL 1 190 -583 1823 134 25 38 chr6 169488000 169488314 -19791240 - AluSg SINE Alu 0 310 1 1436 232 54 25 chr6 169488726 169489174 -19790380 - MLT1C LTR MaLR -6 461 1 24 53 0 0 chr6 169489378 169489416 -19790138 + AT_rich Low_complexity Low_complexity 1 38 0 331 127 79 0 chr6 169490913 169490976 -19788578 - MADE1 DNA Mariner 0 80 13 291 320 94 8 chr6 169491179 169491307 -19788247 - L2 LINE L2 0 3272 3134 1118 147 9 9 chr6 169491325 169491536 -19788018 - L1MA8 LINE L1 -2 6289 6079 335 303 43 43 chr6 169491562 169491747 -19787807 - L2 LINE L2 -8 3305 3121 42 20 0 0 chr6 169492029 169492078 -19787476 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr6 169492483 169492518 -19787036 + AT_rich Low_complexity Low_complexity 1 35 0 510 303 0 89 chr6 169493016 169493297 -19786257 + MLT1K LTR MaLR 326 581 -7 27 62 0 0 chr6 169494750 169494798 -19784756 + AT_rich Low_complexity Low_complexity 1 48 0 229 308 0 8 chr6 169495053 169495170 -19784384 - L1M4 LINE L1 -3166 2980 2865 534 257 232 12 chr6 169495557 169495880 -19783674 + L2 LINE L2 1300 1693 -1621 438 248 83 96 chr6 169496620 169496850 -19782704 + MIR SINE MIR 26 252 -10 1509 246 126 22 chr6 169497955 169498406 -19781148 - MLT1D LTR MaLR 0 505 8 508 170 0 0 chr6 169498548 169498642 -19780912 - L1MA6 LINE L1 -13 6287 6194 21 0 0 0 chr6 169498643 169498664 -19780890 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 169499499 169499528 -19780026 + AT_rich Low_complexity Low_complexity 1 29 0 801 238 31 5 chr6 169499720 169499913 -19779641 + MER3 DNA MER1_type 9 206 -3 231 36 0 0 chr6 169501881 169501909 -19777645 + (TG)n Simple_repeat Simple_repeat 2 29 0 2281 160 8 5 chr6 169501911 169502298 -19777256 - MLT1B LTR MaLR -2 388 1 22 0 0 0 chr6 169504180 169504202 -19775352 + AT_rich Low_complexity Low_complexity 1 22 0 2196 105 24 7 chr6 169504397 169504693 -19774861 + AluSq SINE Alu 1 301 -12 27 49 0 0 chr6 169504818 169504859 -19774695 + AT_rich Low_complexity Low_complexity 1 41 0 1826 181 0 10 chr6 169506092 169506406 -19773148 + AluJb SINE Alu 1 311 -1 378 172 54 0 chr6 169506849 169506942 -19772612 + L1ME4a LINE L1 2913 3010 -3136 594 153 0 0 chr6 169506944 169507055 -19772499 + C-rich Low_complexity Low_complexity 1 111 0 1001 131 13 20 chr6 169507055 169507208 -19772346 - AluJb SINE Alu -24 288 137 529 305 70 31 chr6 169507250 169507637 -19771917 + L1ME4a LINE L1 3131 3532 -2614 1827 91 8 0 chr6 169507721 169507975 -19771579 + L1PB1 LINE L1 5896 6151 0 236 337 59 16 chr6 169508246 169508501 -19771053 + L1ME4a LINE L1 4783 5048 -1098 499 306 93 68 chr6 169508675 169508699 -19770855 + L1ME4a LINE L1 5274 5296 -825 810 173 0 0 chr6 169508699 169508826 -19770728 + FLAM_C SINE Alu 1 127 -6 499 306 93 68 chr6 169508826 169509148 -19770406 + L1ME4a LINE L1 5296 5640 -481 1266 249 141 22 chr6 169509148 169509359 -19770195 + LTR40a LTR ERVL 3 187 -332 1985 148 10 0 chr6 169509359 169509662 -19769892 - AluSg SINE Alu -2 308 3 1266 249 141 22 chr6 169509662 169509912 -19769642 + LTR40a LTR ERVL 187 519 0 499 306 93 68 chr6 169509912 169510104 -19769450 + L1ME4a LINE L1 5640 5826 -295 1677 163 58 34 chr6 169512324 169512705 -19766849 + MLT1B LTR MaLR 1 390 0 2254 116 0 0 chr6 169512765 169513059 -19766495 + AluSx SINE Alu 3 296 -16 1340 271 48 8 chr6 169513375 169513729 -19765825 + MER119 DNA MER1_type 3 370 -213 260 111 0 0 chr6 169513766 169513802 -19765752 + MER119 DNA MER1_type 546 581 -2 405 0 0 0 chr6 169514153 169514198 -19765356 + (TA)n Simple_repeat Simple_repeat 2 46 0 1242 171 70 56 chr6 169514262 169514548 -19765006 - AluJb SINE Alu -10 292 3 1294 228 111 70 chr6 169515190 169515677 -19763877 + MER51C LTR ERV1 127 633 -7 23 0 0 0 chr6 169516335 169516358 -19763196 + AT_rich Low_complexity Low_complexity 1 23 0 293 295 105 0 chr6 169516359 169516454 -19763100 - MER5A DNA MER1_type 0 189 85 365 354 127 0 chr6 169516519 169516700 -19762854 - L2 LINE L2 -504 2810 2607 318 26 0 0 chr6 169517722 169517761 -19761793 + (TG)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr6 169519335 169519357 -19760197 + AT_rich Low_complexity Low_complexity 1 22 0 197 233 0 0 chr6 169520678 169520721 -19758833 + L3b LINE CR1 1539 1581 -2 642 60 0 0 chr6 169521233 169521316 -19758238 + (CAATA)n Simple_repeat Simple_repeat 5 87 0 2164 112 0 3 chr6 169521392 169521686 -19757868 + AluSx SINE Alu 6 298 -14 2230 112 0 3 chr6 169522688 169522984 -19756570 + AluSp SINE Alu 1 295 -18 667 186 4 16 chr6 169522984 169523241 -19756313 + GA-rich Low_complexity Low_complexity 1 254 0 1734 112 15 34 chr6 169524255 169524524 -19755030 + AluSg SINE Alu 37 300 -10 563 292 89 69 chr6 169524528 169525170 -19754384 + L2 LINE L2 2650 3303 -10 258 182 0 0 chr6 169525195 169525250 -19754304 - L1M4 LINE L1 -1455 4691 4637 580 286 48 9 chr6 169525271 169525498 -19754056 - L1M4 LINE L1 -2734 3412 3177 2550 272 91 5 chr6 169525505 169526229 -19753325 - L1MDa LINE L1 -5738 802 58 303 288 0 0 chr6 169526239 169526305 -19753249 - L1MDa LINE L1 -6458 82 17 823 256 38 0 chr6 169526670 169526881 -19752673 + MER20 DNA MER1_type 1 219 0 958 299 33 12 chr6 169527094 169527534 -19752020 + L1ME3A LINE L1 5486 5934 -236 2285 102 0 0 chr6 169527534 169527829 -19751725 + AluSq SINE Alu 1 295 -18 1902 130 63 28 chr6 169528612 169528974 -19750580 + THE1C LTR MaLR 1 375 0 601 305 28 83 chr6 169529886 169530211 -19749343 - L2 LINE L2 -50 3263 2957 * 807 283 27 27 chr6 169530209 169530309 -19749245 - L2 LINE L2 -897 2417 2318 2058 129 40 32 chr6 169530309 169530681 -19748873 - THE1C LTR MaLR 0 375 1 807 283 27 27 chr6 169530681 169530873 -19748681 - L2 LINE L2 -995 2319 2125 551 273 80 25 chr6 169530918 169531291 -19748263 + L1MEc LINE L1 880 1121 -5096 2955 143 2 2 chr6 169532343 169532810 -19746744 - L1PB3 LINE L1 -7 6147 5681 1866 154 136 18 chr6 169533074 169533457 -19746097 + MSTA LTR MaLR 1 428 0 591 297 82 31 chr6 169535595 169536009 -19743545 - HAL1b LINE L1 -702 646 212 218 318 15 0 chr6 169536614 169536680 -19742874 + CT-rich Low_complexity Low_complexity 3 69 0 22 0 0 0 chr6 169538164 169538186 -19741368 + AT_rich Low_complexity Low_complexity 1 22 0 264 275 94 29 chr6 169538686 169538857 -19740697 + LTR37B LTR ERV1 226 407 -61 1731 236 24 24 chr6 169538996 169539454 -19740100 - MLT1C LTR MaLR -7 460 3 1724 275 134 48 chr6 169539454 169540254 -19739300 + L2 LINE L2 1457 2325 -989 245 304 88 82 chr6 169540237 169540408 -19739146 + L2 LINE L2 3140 3311 -2 * 2232 48 34 10 chr6 169540408 169540702 -19738852 - AluY SINE Alu -10 301 1 22 0 0 0 chr6 169541918 169541940 -19737614 + AT_rich Low_complexity Low_complexity 1 22 0 555 354 45 8 chr6 169544132 169544378 -19735176 - MIR SINE MIR 0 262 8 1704 228 43 49 chr6 169544926 169545418 -19734136 + MLT1D LTR MaLR 12 500 -5 186 254 15 75 chr6 169546585 169546652 -19732902 + L2 LINE L2 3251 3313 0 7472 154 40 23 chr6 169546765 169548223 -19731331 - L1MCa LINE L1 -4916 1510 28 2876 233 72 53 chr6 169548232 169548648 -19730906 + L1MC4a LINE L1 6386 6793 -1015 1388 201 22 89 chr6 169548648 169549062 -19730492 + MLT1B LTR MaLR 1 386 -4 2876 233 72 53 chr6 169549062 169549610 -19729944 + L1MC4a LINE L1 6793 7368 -440 280 233 89 0 chr6 169549613 169549703 -19729851 + L1MC4 LINE L1 7920 8017 -25 2098 137 134 8 chr6 169549914 169550294 -19729260 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr6 169550403 169550425 -19729129 + AT_rich Low_complexity Low_complexity 1 22 0 198 71 0 0 chr6 169551828 169551856 -19727698 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1230 248 78 53 chr6 169553104 169553555 -19725999 + MLT1C LTR MaLR 6 467 0 246 308 98 43 chr6 169553886 169554234 -19725320 - L1MC/D LINE L1 -1934 5874 5508 426 237 69 6 chr6 169554519 169554692 -19724862 - HsTC2 DNA Tc2 -2 1896 1713 625 229 186 47 chr6 169554695 169554948 -19724606 - HsTC2 DNA Tc2 -1581 317 30 399 311 117 19 chr6 169554993 169555250 -19724304 + L2 LINE L2 1705 1986 -1328 277 311 67 30 chr6 169555631 169555766 -19723788 + L2 LINE L2 2174 2313 -1001 213 362 39 16 chr6 169555828 169555955 -19723599 + L2 LINE L2 2545 2674 -640 216 0 0 0 chr6 169556189 169556213 -19723341 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr6 169556884 169556905 -19722649 + AT_rich Low_complexity Low_complexity 1 21 0 3554 188 10 21 chr6 169557024 169557700 -19721854 + L1M2 LINE L1 3 671 -6178 266 167 0 0 chr6 169557772 169557814 -19721740 + U2 snRNA snRNA 1 42 -146 9552 164 79 80 chr6 169557817 169558111 -19721443 - L1MCa LINE L1 -3947 2479 2186 3541 78 2 30 chr6 169558111 169558636 -19720918 - L1PA13 LINE L1 -2 6161 5652 9552 164 79 80 chr6 169558636 169560121 -19719433 - L1MCa LINE L1 -4240 2186 818 183 42 0 0 chr6 169560121 169560145 -19719409 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 9552 164 79 80 chr6 169560145 169560943 -19718611 - L1MCa LINE L1 -5608 818 21 690 133 0 0 chr6 169561082 169561195 -19718359 + (TCCC)n Simple_repeat Simple_repeat 4 116 0 2377 80 3 0 chr6 169561465 169561764 -19717790 - AluSp SINE Alu -13 300 1 300 295 87 34 chr6 169561810 169561959 -19717595 + MIR SINE MIR 3 159 -103 186 352 0 28 chr6 169561946 169562017 -19717537 - MIR SINE MIR 0 262 194 * 507 331 13 7 chr6 169562462 169562616 -19716938 + MIR SINE MIR 1 155 -107 25 51 0 0 chr6 169562634 169562673 -19716881 + AT_rich Low_complexity Low_complexity 1 39 0 306 277 66 51 chr6 169563707 169563844 -19715710 - MIR3 SINE MIR -26 182 44 6139 105 2 2 chr6 169564049 169565609 -19713945 - L1PA11 LINE L1 -1 6173 4619 261 57 0 0 chr6 169566201 169566236 -19713318 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2306 102 0 6 chr6 169568339 169568653 -19710901 + AluSx SINE Alu 1 312 0 777 263 12 0 chr6 169568988 169569148 -19710406 + MER5A DNA MER1_type 28 189 0 28 0 0 0 chr6 169569167 169569195 -19710359 + AT_rich Low_complexity Low_complexity 1 28 0 1716 165 3 7 chr6 169569203 169569494 -19710060 - AluJo SINE Alu -22 290 1 865 306 121 22 chr6 169570273 169570721 -19708833 + L2 LINE L2 1205 1696 -1618 204 125 0 0 chr6 169570744 169570776 -19708778 + (TTC)n Simple_repeat Simple_repeat 2 33 0 1000 208 5 0 chr6 169571573 169571770 -19707784 - AluJo SINE Alu -30 282 85 358 158 0 0 chr6 169571770 169571827 -19707727 - AluSx SINE Alu -52 248 192 1152 78 0 0 chr6 169571828 169571969 -19707585 - AluSx SINE Alu -171 141 1 539 174 0 10 chr6 169571988 169572086 -19707468 - FLAM_A SINE Alu -20 122 26 2284 92 3 0 chr6 169572249 169572554 -19707000 - AluY SINE Alu -5 306 1 8016 37 2 0 chr6 169572572 169574322 -19705232 - L1PA4 LINE L1 0 6155 4406 30 27 0 0 chr6 169575204 169575241 -19704313 + AT_rich Low_complexity Low_complexity 1 37 0 1259 189 18 7 chr6 169575582 169575851 -19703703 + MLT1A1 LTR MaLR 13 360 -5 193 288 76 0 chr6 169576849 169576915 -19702639 - MIR SINE MIR -24 238 168 311 262 14 35 chr6 169577352 169577493 -19702061 - L1M4 LINE L1 -1886 4260 4123 598 287 45 28 chr6 169577493 169577740 -19701814 - HERVL-E LTR ERVL -918 4736 4486 * 2691 310 32 27 chr6 169577736 169579182 -19700372 - HERVL-E LTR ERVL -3932 1832 304 438 278 9 0 chr6 169579445 169579553 -19700001 - MLT2E LTR ERVL -1 627 519 240 167 0 24 chr6 169579602 169579644 -19699910 - MLT2E LTR ERVL -123 505 465 512 271 167 9 chr6 169579718 169579939 -19699615 - MLT2E LTR ERVL -354 274 19 448 279 96 35 chr6 169582345 169582657 -19696897 - L1ME4a LINE L1 -239 5882 5552 966 86 7 0 chr6 169583585 169583725 -19695829 - L1PA15 LINE L1 -9 6156 6016 1091 247 46 75 chr6 169584043 169584647 -19694907 + L1MC5 LINE L1 7327 7913 -48 282 358 28 0 chr6 169585275 169585451 -19694103 - HAL1b LINE L1 -736 612 432 1833 182 18 18 chr6 169586083 169586473 -19693081 - MLT1B LTR MaLR 0 390 1 22 0 0 0 chr6 169586519 169586541 -19693013 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr6 169586797 169586825 -19692729 + AT_rich Low_complexity Low_complexity 1 28 0 198 71 0 0 chr6 169586893 169586921 -19692633 + (TG)n Simple_repeat Simple_repeat 1 28 0 261 125 0 21 chr6 169586947 169586995 -19692559 + MSTC LTR MaLR 1 47 -349 1115 161 89 38 chr6 169586999 169587235 -19692319 + MSTC LTR MaLR 180 427 -1 423 230 168 19 chr6 169587503 169587664 -19691890 - L2 LINE L2 -5 3308 3124 447 262 76 55 chr6 169587665 169588097 -19691457 - L1ME LINE L1 -5150 1055 661 3488 53 2 11 chr6 169588099 169588555 -19690999 - L1PA7 LINE L1 0 6154 5703 1918 39 4 0 chr6 169588555 169588785 -19690769 + L1PA7 LINE L1 5450 5680 -474 367 338 118 42 chr6 169588994 169589325 -19690229 - L1ME LINE L1 -5965 431 76 195 42 0 0 chr6 169590045 169590069 -19689485 + (T)n Simple_repeat Simple_repeat 1 24 0 3534 125 75 72 chr6 169590270 169591047 -19688507 - LTR1 LTR ERV1 0 785 7 902 121 0 27 chr6 169591433 169591582 -19687972 - L1MA6 LINE L1 -2 6298 6154 22 56 0 0 chr6 169591793 169591829 -19687725 + AT_rich Low_complexity Low_complexity 1 36 0 1178 117 19 24 chr6 169593439 169593645 -19685909 + MSTB LTR MaLR 1 205 -221 1023 135 0 0 chr6 169593751 169593921 -19685633 + (TTCTCC)n Simple_repeat Simple_repeat 5 174 0 939 222 14 5 chr6 169593924 169594131 -19685423 + MSTB LTR MaLR 203 411 -15 682 296 46 25 chr6 169594181 169594421 -19685133 + MIR SINE MIR 3 247 -15 339 266 39 45 chr6 169596200 169596354 -19683200 + MIR SINE MIR 71 223 -39 689 306 25 55 chr6 169598218 169598581 -19680973 + HAL1 LINE L1 27 378 -2129 447 248 51 7 chr6 169599142 169599279 -19680275 + HAL1 LINE L1 1116 1258 -1249 3078 305 82 36 chr6 169599586 169601000 -19678554 + L2 LINE L2 17 1495 -1819 403 299 6 43 chr6 169601611 169601775 -19677779 - MIR3 SINE MIR 0 208 51 28 71 0 0 chr6 169601854 169601910 -19677644 + AT_rich Low_complexity Low_complexity 1 56 0 1509 92 23 0 chr6 169601910 169602128 -19677426 - L1PA8 LINE L1 -8 6164 5942 26 30 0 0 chr6 169602396 169602429 -19677125 + AT_rich Low_complexity Low_complexity 1 33 0 2259 102 0 7 chr6 169603585 169603890 -19675664 + AluSx SINE Alu 1 303 -9 583 360 42 0 chr6 169604321 169604535 -19675019 + MIR SINE MIR 2 224 -38 384 333 56 22 chr6 169605462 169605642 -19673912 + MER5A DNA MER1_type 4 189 0 518 293 97 22 chr6 169605715 169606036 -19673518 + L1ME1 LINE L1 39 383 -6013 425 152 0 22 chr6 169606045 169606137 -19673417 + (CAGAGA)n Simple_repeat Simple_repeat 5 94 0 1621 275 17 13 chr6 169606145 169606610 -19672944 + L1ME1 LINE L1 377 843 -5553 * 3112 252 35 16 chr6 169606597 169607823 -19671731 + L1ME1 LINE L1 4930 6173 -62 663 352 63 48 chr6 169608026 169608585 -19670969 + ERVL LTR ERVL 2969 3535 -2229 496 333 42 16 chr6 169609361 169609553 -19670001 + LTR16A LTR ERVL 129 325 -125 239 261 0 0 chr6 169610023 169610088 -19669466 - L1M LINE L1 -759 5419 5355 294 282 195 7 chr6 169610793 169610942 -19668612 + MIR SINE MIR 13 189 -73 2044 108 0 7 chr6 169611190 169611468 -19668086 + AluSx SINE Alu 1 276 -36 342 0 0 0 chr6 169611571 169611609 -19667945 + (TA)n Simple_repeat Simple_repeat 1 38 0 1406 189 36 40 chr6 169611682 169611983 -19667571 - AluSx SINE Alu -12 300 1 749 271 4 67 chr6 169613970 169614210 -19665344 + MIR SINE MIR 12 236 -26 1087 190 122 101 chr6 169614213 169614608 -19664946 + MER57A LTR ERV1 1 403 0 21 57 0 0 chr6 169614842 169614877 -19664677 + AT_rich Low_complexity Low_complexity 1 35 0 326 290 95 48 chr6 169615201 169615453 -19664101 - L1ME LINE L1 -393 5728 5465 476 258 16 77 chr6 169616025 169616219 -19663335 + L1ME1 LINE L1 5980 6164 0 276 217 0 0 chr6 169616291 169616351 -19663203 - L1M4 LINE L1 -2472 3674 3615 1866 164 7 0 chr6 169616842 169617141 -19662413 + AluSx SINE Alu 1 301 -11 287 255 0 53 chr6 169617164 169617258 -19662296 - MIR SINE MIR -6 256 168 24 32 0 0 chr6 169618879 169618910 -19660644 + AT_rich Low_complexity Low_complexity 1 31 0 463 280 84 47 chr6 169619344 169619485 -19660069 - L2 LINE L2 -901 2413 2260 1688 190 7 3 chr6 169619485 169619790 -19659764 + AluJb SINE Alu 3 308 -4 463 280 84 47 chr6 169619790 169619862 -19659692 - L2 LINE L2 -1054 2260 2192 2409 127 8 3 chr6 169619887 169620249 -19659305 + THE1B LTR MaLR 1 364 0 293 165 66 74 chr6 169620249 169620370 -19659184 - MER96B DNA MER1_type? -33 384 265 276 373 18 0 chr6 169620422 169620532 -19659022 - L2 LINE L2 -1116 2198 2087 402 231 39 0 chr6 169620685 169620789 -19658765 - L1ME1 LINE L1 -23 6143 6036 762 309 50 4 chr6 169620790 169621052 -19658502 - HERV16 LTR ERVL -3854 1142 869 1361 291 52 33 chr6 169621129 169621788 -19657766 - HERV16 LTR ERVL -4235 761 91 891 303 118 11 chr6 169622000 169622356 -19657198 - LTR16A LTR ERVL -38 412 19 357 264 26 97 chr6 169622381 169622608 -19656946 - HAL1 LINE L1 -2296 211 1 192 40 0 0 chr6 169622918 169622943 -19656611 + (CA)n Simple_repeat Simple_repeat 1 25 0 3753 151 20 5 chr6 169623897 169624554 -19655000 - L1PA16 LINE L1 0 6166 5500 2984 70 68 0 chr6 169624554 169624951 -19654603 + THE1B-int LTR MaLR 1157 1580 0 2010 117 61 29 chr6 169624952 169625294 -19654260 + THE1B LTR MaLR 2 354 -10 5465 207 58 16 chr6 169625294 169626763 -19652791 - L1PA16 LINE L1 -660 5506 3985 319 343 24 41 chr6 169626968 169627137 -19652417 + L2 LINE L2 3147 3312 -1 252 278 191 19 chr6 169627496 169627658 -19651896 - MIR SINE MIR -2 260 71 23 0 0 0 chr6 169627911 169627934 -19651620 + AT_rich Low_complexity Low_complexity 1 23 0 228 174 0 0 chr6 169628309 169628355 -19651199 + LTR66 LTR ERVL 394 439 -171 427 271 62 57 chr6 169628389 169628581 -19650973 - L2 LINE L2 0 3313 3121 557 208 64 24 chr6 169628616 169628741 -19650813 + FLAM_A SINE Alu 2 131 -2 419 378 46 4 chr6 169628918 169629156 -19650398 - L2 LINE L2 -416 2898 2651 339 65 0 0 chr6 169629437 169629483 -19650071 + (TC)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr6 169629891 169629912 -19649642 + AT_rich Low_complexity Low_complexity 1 21 0 1789 166 0 10 chr6 169630636 169630960 -19648594 + AluJb SINE Alu 1 321 0 451 262 160 46 chr6 169631462 169631855 -19647699 - L1M4 LINE L1 -2162 3984 3547 1037 163 29 67 chr6 169632560 169632799 -19646755 - L1MA10 LINE L1 -45 6289 6060 1830 208 19 48 chr6 169633030 169633511 -19646043 - MLT1C LTR MaLR 0 467 1 275 267 27 13 chr6 169634287 169634362 -19645192 - L1MEd LINE L1 -4872 1247 1172 272 283 50 61 chr6 169634414 169634775 -19644779 - L1MEd LINE L1 -4962 1157 801 7511 29 1 3 chr6 169635101 169636552 -19643002 + L1PA3 LINE L1 4705 6153 -2 323 298 78 78 chr6 169636567 169636785 -19642769 - L1MEd LINE L1 -5634 485 268 1608 162 62 59 chr6 169636805 169637194 -19642360 + MLT1B LTR MaLR 1 390 0 1674 148 16 8 chr6 169637650 169637907 -19641647 + AluSx SINE Alu 41 299 -13 26 50 0 0 chr6 169638446 169638486 -19641068 + AT_rich Low_complexity Low_complexity 1 40 0 2437 244 11 11 chr6 169639601 169640240 -19639314 - L1MA10 LINE L1 0 6334 5696 1912 148 8 67 chr6 169640259 169640618 -19638936 - MER2 DNA MER2_type -7 338 1 4711 112 10 11 chr6 169640625 169641341 -19638213 + HSMAR2 DNA Mariner 2 716 -586 2054 161 12 9 chr6 169641348 169641690 -19637864 + MER61A LTR ERV1 1 343 0 2294 186 112 15 chr6 169641690 169642325 -19637229 + MER61A-int LTR ERV1 1 777 -4440 286 149 0 0 chr6 169642318 169642365 -19637189 + MER61A-int LTR ERV1 1320 1366 -3851 * 399 21 0 0 chr6 169642381 169642429 -19637125 + (TG)n Simple_repeat Simple_repeat 1 48 0 4395 103 26 30 chr6 169642429 169643157 -19636397 + MER61A-int LTR ERV1 1462 2186 -3031 * 17222 85 43 42 chr6 169643151 169645353 -19634201 + MER61A-int LTR ERV1 2591 4799 -418 2281 123 0 0 chr6 169645353 169645663 -19633891 + AluSg SINE Alu 1 310 0 17222 85 43 42 chr6 169645663 169646083 -19633471 + MER61A-int LTR ERV1 4799 5217 0 1582 192 42 12 chr6 169646083 169646416 -19633138 + MER61A LTR ERV1 1 343 0 3485 106 29 49 chr6 169646418 169646632 -19632922 + HSMAR2 DNA Mariner 722 939 -363 1953 150 7 0 chr6 169646632 169646939 -19632615 - AluSx SINE Alu -3 309 1 3485 106 29 49 chr6 169646939 169647317 -19632237 + HSMAR2 DNA Mariner 939 1302 0 190 296 102 43 chr6 169649886 169649932 -19629622 - L2 LINE L2 -978 2336 2294 3248 158 18 34 chr6 169649932 169650547 -19629007 + MER6A DNA MER2_type 1 605 0 190 296 102 43 chr6 169650547 169650686 -19628868 - L2 LINE L2 -1020 2294 2140 892 240 84 0 chr6 169651064 169651289 -19628265 - MLT1H LTR MaLR -305 244 1 270 364 62 19 chr6 169651338 169651500 -19628054 - MER5A DNA MER1_type -1 188 20 427 179 0 13 chr6 169651619 169651697 -19627857 - Tigger4(Zombi) DNA MER2_type 0 2731 2655 2822 228 48 31 chr6 169651702 169652536 -19627018 - L1ME1 LINE L1 -82 6153 5305 439 141 0 0 chr6 169652539 169652610 -19626944 - AluS SINE Alu -15 295 225 920 212 54 121 chr6 169652636 169652873 -19626681 - L1ME1 LINE L1 -987 5228 5033 775 239 97 58 chr6 169652873 169653233 -19626321 + MLT1A2 LTR MaLR 1 374 0 920 212 54 121 chr6 169653233 169653443 -19626111 - L1ME1 LINE L1 -1182 5033 4811 242 302 38 6 chr6 169653435 169653594 -19625960 - L1ME1 LINE L1 -2173 4042 3879 * 1737 222 107 28 chr6 169655485 169656017 -19623537 - L1ME1 LINE L1 -5788 608 35 809 200 31 55 chr6 169656017 169656272 -19623282 - L1MDa LINE L1 -3254 3286 3038 1627 182 154 0 chr6 169656275 169656632 -19622922 - MLT2D LTR ERVL -1 413 2 1018 177 4 67 chr6 169656632 169656967 -19622587 - MER50 LTR ERV1 0 734 449 * 1266 124 60 14 chr6 169656952 169657169 -19622385 - MER50 LTR ERV1 -507 227 1 835 254 156 15 chr6 169657172 169657787 -19621767 - L1MDa LINE L1 -3502 3038 2351 12613 157 22 17 chr6 169657859 169660069 -19619485 + L1PA12 LINE L1 1085 3313 -4271 2014 134 20 0 chr6 169660069 169660374 -19619180 + AluSx SINE Alu 1 311 -1 12613 157 22 17 chr6 169660374 169660716 -19618838 + L1PA12 LINE L1 3313 3652 -3932 2131 134 0 10 chr6 169660716 169661029 -19618525 + AluSx SINE Alu 3 312 0 397 308 84 30 chr6 169662495 169662758 -19616796 + L1MEc LINE L1 851 1127 -5436 287 171 57 0 chr6 169662764 169662852 -19616702 + (TA)n Simple_repeat Simple_repeat 1 93 0 954 291 100 42 chr6 169662852 169663700 -19615854 + L1MEc LINE L1 1065 2118 -4445 1157 269 55 56 chr6 169663872 169664191 -19615363 + L1MEc LINE L1 2340 2658 -3724 1815 159 20 0 chr6 169664191 169664486 -19615068 + AluJb SINE Alu 1 301 -11 1157 269 55 56 chr6 169664486 169665000 -19614554 + L1MEc LINE L1 2658 3127 -3255 227 333 9 29 chr6 169665004 169665109 -19614445 - L1ME LINE L1 -5948 122 20 483 146 11 5 chr6 169665109 169665182 -19614372 + L1MA7 LINE L1 6180 6251 -61 279 0 0 0 chr6 169665182 169665213 -19614341 + (TTA)n Simple_repeat Simple_repeat 2 32 0 2157 109 3 3 chr6 169665221 169665514 -19614040 - AluSp SINE Alu -20 293 1 483 146 11 5 chr6 169665514 169665533 -19614021 + L1MA7 LINE L1 6257 6287 -25 190 241 126 69 chr6 169667369 169667456 -19612098 + L2 LINE L2 3168 3259 -13 186 43 0 0 chr6 169667456 169667479 -19612075 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 1826 315 57 31 chr6 169667536 169668481 -19611073 + HERV16 LTR ERVL 611 1580 -3416 2334 105 0 3 chr6 169669179 169669493 -19610061 - AluSq SINE Alu 0 313 1 2020 145 0 13 chr6 169669823 169670134 -19609420 - AluSx SINE Alu -5 307 1 373 345 67 30 chr6 169670143 169670308 -19609246 - MER5A DNA MER1_type -11 178 8 269 252 14 122 chr6 169671597 169671699 -19607855 - L2 LINE L2 -5 3308 3225 2338 101 0 0 chr6 169671699 169671996 -19607558 + AluSc SINE Alu 1 297 -12 269 252 14 122 chr6 169671996 169672040 -19607514 - L2 LINE L2 -88 3225 3178 333 0 0 0 chr6 169672347 169672384 -19607170 + (TG)n Simple_repeat Simple_repeat 1 37 0 184 318 237 25 chr6 169673011 169673247 -19606307 - L2 LINE L2 -418 2896 2611 824 158 0 0 chr6 169673270 169673397 -19606157 + AluJb SINE Alu 179 305 -7 473 83 0 14 chr6 169673410 169673482 -19606072 + (GAAAA)n Simple_repeat Simple_repeat 5 75 0 1102 150 11 18 chr6 169673512 169673712 -19605842 + MLT1B LTR MaLR 192 497 -8 212 326 30 91 chr6 169673831 169673963 -19605591 + L2 LINE L2 3137 3260 -12 238 341 134 28 chr6 169673994 169674173 -19605381 - L2 LINE L2 -1953 1361 1164 487 303 69 6 chr6 169674594 169674769 -19604785 - MIR SINE MIR -69 193 8 1854 178 0 0 chr6 169675001 169675304 -19604250 - AluJb SINE Alu -8 304 2 595 219 34 89 chr6 169675490 169675640 -19603914 + L1MDa LINE L1 2484 2609 -3931 2003 137 13 0 chr6 169675640 169675953 -19603601 + L1PA16 LINE L1 5836 6152 -14 595 219 34 89 chr6 169675953 169676099 -19603455 + L1MDa LINE L1 2609 2761 -3779 2812 247 49 31 chr6 169676150 169677232 -19602322 + L1M4 LINE L1 3978 5078 -1068 240 374 24 0 chr6 169678552 169678675 -19600879 + MIR SINE MIR 28 153 -109 248 301 65 0 chr6 169678735 169678828 -19600726 + MER94 DNA DNA 1 99 -35 2249 302 80 49 chr6 169678853 169679195 -19600359 - L1MCc LINE L1 -5013 1410 1080 2040 127 30 46 chr6 169679195 169679565 -19599989 + THE1B LTR MaLR 1 364 0 2249 302 80 49 chr6 169679565 169679578 -19599976 - L1MCc LINE L1 -5343 1080 1069 2052 117 20 10 chr6 169679578 169679876 -19599678 - AluSx SINE Alu -9 303 3 2249 302 80 49 chr6 169679876 169680262 -19599292 - L1MCc LINE L1 -5354 1069 696 2241 148 22 0 chr6 169680262 169680619 -19598935 + MLT1A1 LTR MaLR 1 365 0 2249 302 80 49 chr6 169680619 169681163 -19598391 - L1MCc LINE L1 -5727 696 83 674 284 132 36 chr6 169681334 169682144 -19597410 - L1MDa LINE L1 -4440 1640 846 886 288 65 30 chr6 169682149 169682580 -19596974 - L1MDa LINE L1 -5258 812 367 456 305 57 36 chr6 169682772 169683106 -19596448 - L1MC4 LINE L1 -13 8029 7689 25 51 0 0 chr6 169683573 169683612 -19595942 + AT_rich Low_complexity Low_complexity 1 39 0 45 19 0 0 chr6 169683635 169683687 -19595867 + AT_rich Low_complexity Low_complexity 1 52 0 349 174 14 0 chr6 169683687 169683756 -19595798 - L1MA5A LINE L1 -21 6276 6207 1170 52 35 0 chr6 169684557 169684611 -19594943 + (TTTC)n Simple_repeat Simple_repeat 1 233 0 1170 52 35 0 chr6 169684611 169684783 -19594771 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 201 147 0 0 chr6 169684865 169684899 -19594655 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 9027 26 1 1 chr6 169684899 169686761 -19592793 - L1PA3 LINE L1 0 6155 4311 1774 174 27 0 chr6 169686935 169687233 -19592321 + AluJb SINE Alu 1 306 -6 263 333 12 0 chr6 169687494 169687578 -19591976 - L2 LINE L2 -3 3310 3226 276 77 0 0 chr6 169688414 169688453 -19591101 + (TG)n Simple_repeat Simple_repeat 2 40 0 2675 216 24 47 chr6 169688555 169689222 -19590332 - MER82 DNA MER2_type 0 653 2 195 372 93 17 chr6 169689332 169689504 -19590050 - L2 LINE L2 -218 3054 2870 297 346 0 0 chr6 169690335 169690439 -19589115 - MIR3 SINE MIR -7 201 98 2414 88 0 3 chr6 169692593 169692899 -19586655 + AluSc SINE Alu 1 305 -4 3022 156 10 39 chr6 169693111 169693702 -19585852 - MER4B LTR ERV1 -36 574 1 2999 180 61 26 chr6 169693829 169694529 -19585025 - LTR8A LTR ERV1 0 727 3 343 311 97 20 chr6 169694632 169694880 -19584674 + L2 LINE L2 2853 3119 -194 239 67 0 0 chr6 169695525 169695554 -19584000 + MER57A LTR ERV1 1 29 -374 1008 147 25 17 chr6 169695554 169695737 -19583817 + THE1C LTR MaLR 1 162 -213 741 110 59 0 chr6 169695751 169695869 -19583685 - LTR54B LTR ERV1 -371 127 3 10130 121 14 8 chr6 169695869 169697212 -19582342 - MER57A-int LTR ERV1 -391 7146 5790 2382 67 7 7 chr6 169697212 169697512 -19582042 - AluY SINE Alu -11 300 1 10130 121 14 8 chr6 169697512 169697694 -19581860 - MER57A-int LTR ERV1 -1747 5790 5611 1696 125 72 17 chr6 169697694 169698111 -19581443 - MER4A LTR ERV1 -2 662 100 189 0 0 0 chr6 169698111 169698132 -19581422 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1696 125 72 17 chr6 169698132 169698238 -19581316 - MER4A LTR ERV1 -564 100 1 4472 130 38 3 chr6 169698239 169698976 -19580578 - MER57A-int LTR ERV1 -1922 5615 4853 1261 206 73 93 chr6 169698980 169699581 -19579973 - MER57A-int LTR ERV1 -2193 4138 3550 4002 108 0 2 chr6 169699581 169700136 -19579418 - MER41A LTR ERV1 0 554 1 9359 118 44 43 chr6 169700136 169702359 -19577195 - MER41A-int LTR ERV1 -2 5944 3725 297 154 0 0 chr6 169702359 169702411 -19577143 - AluSc SINE Alu -5 294 243 9359 118 44 43 chr6 169702411 169703334 -19576220 - MER41A-int LTR ERV1 -2221 3725 1075 4384 131 40 14 chr6 169703313 169704030 -19575524 - MER41A-int LTR ERV1 -5301 645 1 * 3921 100 9 0 chr6 169704030 169704579 -19574975 - MER41A LTR ERV1 0 554 1 505 176 29 29 chr6 169704584 169704754 -19574800 - MER57A-int LTR ERV1 -3028 2095 1926 350 91 0 0 chr6 169704845 169704900 -19574654 - MER57A-int LTR ERV1 -3870 2888 2834 362 225 0 11 chr6 169705009 169705098 -19574456 - MER57A-int LTR ERV1 -2890 3441 3354 505 221 0 0 chr6 169705146 169705241 -19574313 - MER57A-int LTR ERV1 -2990 3341 3247 427 221 78 60 chr6 169705320 169705537 -19574017 - MER57A-int LTR ERV1 -4545 2053 1833 400 129 0 0 chr6 169705700 169705762 -19573792 - MER34C LTR ERV1 -369 216 155 279 279 93 36 chr6 169705762 169705902 -19573652 - MER57A-int LTR ERV1 -4135 988 841 1656 137 23 30 chr6 169706005 169706304 -19573250 - MER57A-int LTR ERV1 -6695 842 546 632 122 0 10 chr6 169706306 169706404 -19573150 + MER4A LTR ERV1 1 97 -567 1929 141 3 27 chr6 169706405 169706759 -19572795 + MER4A LTR ERV1 261 664 0 2834 155 7 4 chr6 169706759 169707217 -19572337 - MER57A-int LTR ERV1 -6990 547 89 1141 70 0 0 chr6 169707220 169707363 -19572191 - MER4E LTR ERV1 0 766 624 4526 168 24 107 chr6 169707468 169708233 -19571321 - L1MC3 LINE L1 -736 7049 6331 514 75 25 0 chr6 169708233 169708313 -19571241 + AluJ/FRAM SINE Alu 231 312 0 4526 168 24 107 chr6 169708313 169708656 -19570898 - L1MC3 LINE L1 -1454 6331 5961 4203 83 14 48 chr6 169708762 169708956 -19570598 - MER4E LTR ERV1 -147 619 420 2212 99 7 3 chr6 169708956 169709250 -19570304 + AluSq SINE Alu 1 295 -18 4203 83 14 48 chr6 169709250 169709694 -19569860 - MER4E LTR ERV1 -346 420 3 437 173 13 0 chr6 169709702 169709777 -19569777 - MER57A-int LTR ERV1 -7461 76 1 2435 126 25 13 chr6 169709777 169710175 -19569379 - MER57A LTR ERV1 0 403 1 219 290 90 20 chr6 169710186 169710286 -19569268 - MIR SINE MIR -140 122 16 661 81 0 0 chr6 169710426 169710512 -19569042 + 5S rRNA rRNA 4 89 -32 266 282 83 26 chr6 169710583 169710739 -19568815 - L1M4 LINE L1 -2309 3837 3673 315 215 0 0 chr6 169711611 169711676 -19567878 - L1MC3 LINE L1 -2396 5599 5535 2683 146 66 14 chr6 169711701 169711824 -19567730 - MER41E LTR ERV1 0 512 397 2239 97 3 3 chr6 169711824 169712132 -19567422 + AluSg SINE Alu 1 308 -2 2683 146 66 14 chr6 169712132 169712495 -19567059 - MER41E LTR ERV1 -115 397 1 757 248 45 7 chr6 169712575 169712929 -19566625 - L1MC3 LINE L1 -676 5486 5122 366 259 157 30 chr6 169712931 169713128 -19566426 + MLT2C1 LTR ERVL 4 225 -172 216 163 0 0 chr6 169713134 169713177 -19566377 + GA-rich Low_complexity Low_complexity 1 43 0 367 213 93 46 chr6 169713254 169713324 -19566230 + MLT2F LTR ERVL 540 618 -45 446 0 19 0 chr6 169713324 169713378 -19566176 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 367 213 93 46 chr6 169713378 169713415 -19566139 + MLT2F LTR ERVL 618 652 -11 1064 284 64 4 chr6 169713437 169713905 -19565649 - L1MC3 LINE L1 -1050 5096 4601 32 43 0 0 chr6 169713915 169713961 -19565593 + AT_rich Low_complexity Low_complexity 1 46 0 478 239 68 8 chr6 169714544 169714661 -19564893 + L2 LINE L2 3189 3312 -1 30 69 0 0 chr6 169714692 169714750 -19564804 + AT_rich Low_complexity Low_complexity 1 58 0 403 270 4 46 chr6 169714789 169714924 -19564630 + MLT1J2 LTR MaLR 37 165 -244 504 200 70 0 chr6 169715680 169715795 -19563759 + MLT1J2 LTR MaLR 4 126 -324 506 253 90 24 chr6 169715834 169716000 -19563554 + MLT1J1 LTR MaLR 204 380 -66 498 313 152 35 chr6 169716085 169716409 -19563145 - LTR16C LTR ERVL 0 491 104 1588 176 98 41 chr6 169716409 169716778 -19562776 + MLT1B LTR MaLR 1 390 0 498 313 152 35 chr6 169716778 169716881 -19562673 - LTR16C LTR ERVL -387 104 14 279 315 55 34 chr6 169717276 169717422 -19562132 - ERVL LTR ERVL -647 5117 4969 332 271 47 12 chr6 169717502 169717587 -19561967 - ERVL LTR ERVL -826 4828 4741 1761 192 42 23 chr6 169717588 169718039 -19561515 - MER89 LTR ERV1 0 559 1 26 0 0 0 chr6 169718163 169718189 -19561365 + AT_rich Low_complexity Low_complexity 1 26 0 491 270 18 12 chr6 169718751 169718914 -19560640 - LTR16C LTR ERVL 0 491 328 711 218 191 36 chr6 169719685 169720130 -19559424 - L1ME2 LINE L1 -9 6155 5656 589 234 16 60 chr6 169720131 169720286 -19559268 - L1ME2 LINE L1 -568 5596 5449 2220 151 25 57 chr6 169720286 169720724 -19558830 + MSTB LTR MaLR 1 424 -2 589 234 16 60 chr6 169720724 169720752 -19558802 - L1ME2 LINE L1 -715 5449 5421 216 0 0 0 chr6 169720804 169720828 -19558726 + (TG)n Simple_repeat Simple_repeat 2 25 0 276 228 18 0 chr6 169721111 169721168 -19558386 + MER94 DNA DNA 1 58 -76 30 83 0 0 chr6 169721245 169721317 -19558237 + AT_rich Low_complexity Low_complexity 1 72 0 658 272 90 6 chr6 169721381 169721716 -19557838 - MER114 LTR ERV -176 472 110 602 256 0 0 chr6 169722149 169722270 -19557284 - FLAM_A SINE Alu -12 121 1 2010 148 128 13 chr6 169722309 169722693 -19556861 + MSTA LTR MaLR 1 428 0 253 274 52 22 chr6 169722708 169722843 -19556711 + L1M4 LINE L1 4534 4672 -1474 241 274 0 0 chr6 169722874 169722947 -19556607 + L1M4 LINE L1 4760 4832 -1314 1936 230 49 5 chr6 169723680 169724127 -19555427 - MLT1C LTR MaLR 0 467 1 2009 124 0 3 chr6 169724170 169724453 -19555101 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr6 169724457 169724480 -19555074 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 208 180 20 0 chr6 169724725 169724775 -19554779 + A-rich Low_complexity Low_complexity 2 52 0 404 330 71 9 chr6 169724893 169725117 -19554437 + MER102a DNA MER1_type 88 325 -5 229 130 130 37 chr6 169726519 169726573 -19552981 + MLT1I LTR MaLR 226 284 -125 261 0 0 0 chr6 169727119 169727148 -19552406 + (T)n Simple_repeat Simple_repeat 1 29 0 2222 73 7 7 chr6 169728267 169728553 -19551001 + AluSq SINE Alu 23 308 -5 207 100 0 0 chr6 169730417 169730447 -19549107 + (T)n Simple_repeat Simple_repeat 1 30 0 1916 185 21 16 chr6 169731426 169731799 -19547755 - LTR62 LTR ERVK -2 717 343 539 143 33 0 chr6 169731848 169731939 -19547615 - LTR62 LTR ERVK -625 94 1 1652 122 159 90 chr6 169731997 169732375 -19547179 - MER4A LTR ERV1 0 664 261 288 67 22 22 chr6 169732375 169732420 -19547134 - MER4A LTR ERV1 -566 98 54 13264 103 52 25 chr6 169732453 169732512 -19547042 - MER4A-int LTR ERV1 -2 6596 6540 2816 73 92 5 chr6 169732512 169732924 -19546630 - LTR7 LTR ERV1 -2 448 1 13264 103 52 25 chr6 169732924 169733911 -19545643 - MER4A-int LTR ERV1 -58 6540 5582 2242 114 3 0 chr6 169733911 169734218 -19545336 - AluSq SINE Alu -5 308 1 13264 103 52 25 chr6 169734218 169735189 -19544365 - MER4A-int LTR ERV1 -1016 5582 4639 1990 89 16 0 chr6 169735189 169735446 -19544108 + AluY SINE Alu 39 299 -12 13264 103 52 25 chr6 169735446 169736577 -19542977 - MER4A-int LTR ERV1 -1959 4639 2737 1218 141 132 0 chr6 169736584 169736804 -19542750 + LTR8 LTR ERV1 9 257 -434 4198 94 58 3 chr6 169736804 169737461 -19542093 - MER4A-int LTR ERV1 -4103 2495 1803 1482 117 8 115 chr6 169737458 169737857 -19541697 - MER4A-int LTR ERV1 -4210 1268 503 * 309 120 20 0 chr6 169737855 169737905 -19541649 - MER4A-int LTR ERV1 -5712 886 836 * 2551 125 72 16 chr6 169738549 169738996 -19540558 - MER4A-int LTR ERV1 -6126 472 1 1748 125 5 84 chr6 169738999 169739374 -19540180 - MER4A LTR ERV1 0 664 261 261 127 380 14 chr6 169739376 169739447 -19540107 - MER4A LTR ERV1 -567 97 1 302 276 49 41 chr6 169739983 169740106 -19539448 + L1M4 LINE L1 5270 5393 -753 277 196 29 108 chr6 169740150 169740252 -19539302 + L1M4 LINE L1 4756 4849 -1297 255 289 31 10 chr6 169740260 169740357 -19539197 + L1M4 LINE L1 5058 5156 -990 1888 187 68 34 chr6 169740580 169741024 -19538530 + LTR2B LTR ERV1 32 490 0 308 264 0 14 chr6 169741275 169741347 -19538207 - MER76 LTR ERV 0 688 618 2149 52 0 0 chr6 169741678 169741930 -19537624 + AluY SINE Alu 1 252 -59 228 299 9 47 chr6 169741938 169742045 -19537509 - L2 LINE L2 -1341 1973 1871 21 57 0 0 chr6 169742102 169742137 -19537417 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr6 169742428 169742463 -19537091 + AT_rich Low_complexity Low_complexity 1 35 0 12644 239 24 31 chr6 169742725 169742813 -19536741 - L1PA16 LINE L1 -9 7595 7508 1717 147 75 36 chr6 169742813 169743174 -19536380 + THE1C LTR MaLR 1 375 0 12644 239 24 31 chr6 169743174 169743973 -19535581 - L1PA16 LINE L1 -96 7508 6705 1383 161 108 69 chr6 169743973 169744171 -19535383 - THE1C LTR MaLR 0 375 155 2027 117 3 20 chr6 169744171 169744471 -19535083 - AluSx SINE Alu -15 297 3 1383 161 108 69 chr6 169744471 169744633 -19534921 - THE1C LTR MaLR -220 155 1 12644 239 24 31 chr6 169744633 169749151 -19530403 - L1PA16 LINE L1 -899 6705 2185 216 0 0 0 chr6 169749258 169749282 -19530272 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 293 267 0 0 chr6 169749421 169749496 -19530058 - L1PA16 LINE L1 -5402 2179 2105 681 340 131 32 chr6 169749670 169750203 -19529351 - L1PA16 LINE L1 -6200 1374 789 24 53 0 0 chr6 169750219 169750257 -19529297 + AT_rich Low_complexity Low_complexity 1 38 0 778 244 44 88 chr6 169751328 169751727 -19527827 - MLT2C1 LTR ERVL 0 663 18 1583 193 20 37 chr6 169752375 169752723 -19526831 + MER2 DNA MER2_type 2 343 -1 269 132 0 19 chr6 169752735 169752788 -19526766 + (TG)n Simple_repeat Simple_repeat 2 53 0 184 203 63 63 chr6 169753123 169753202 -19526352 + L2 LINE L2 3128 3206 -107 572 269 103 0 chr6 169753258 169753492 -19526062 - MIR SINE MIR -3 259 2 1117 148 82 29 chr6 169753660 169753903 -19525651 + L1MB2 LINE L1 5914 6169 -2 495 323 103 26 chr6 169754002 169754234 -19525320 + L2 LINE L2 2708 2957 -357 375 351 84 0 chr6 169754405 169754536 -19525018 - MLT1J LTR MaLR -369 142 1 311 293 28 9 chr6 169755259 169755365 -19524189 - L1MC4 LINE L1 -1321 6790 6683 37 0 0 0 chr6 169755365 169755402 -19524152 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr6 169755884 169755925 -19523629 + AT_rich Low_complexity Low_complexity 1 41 0 252 249 132 42 chr6 169756716 169756905 -19522649 - L1MC4 LINE L1 -2331 5546 5341 382 300 105 45 chr6 169757000 169757636 -19521918 - L1MC4 LINE L1 -1308 4907 4223 2573 64 0 0 chr6 169757636 169757947 -19521607 - AluY SINE Alu 0 311 1 382 300 105 45 chr6 169757947 169758017 -19521537 - L1MC4 LINE L1 -1992 4223 4159 2069 283 55 5 chr6 169758241 169758958 -19520596 + L1ME1 LINE L1 5363 6109 -57 737 250 71 27 chr6 169758977 169759273 -19520281 - L1M4 LINE L1 -830 5316 5008 656 140 0 0 chr6 169759273 169759373 -19520181 - LTR12 LTR ERV1 0 714 615 357 246 34 17 chr6 169759375 169759493 -19520061 - LTR30 LTR ERV1 -79 643 524 954 129 31 102 chr6 169759580 169759810 -19519744 - LTR12 LTR ERV1 -480 1683 48 230 231 0 0 chr6 169759825 169759877 -19519677 - LTR30 LTR ERV1 -670 52 1 1493 239 48 49 chr6 169759877 169760530 -19519024 - L1M4 LINE L1 -1135 5011 4360 905 290 136 35 chr6 169760513 169761470 -19518084 - L1MC4 LINE L1 -4130 2266 1407 * 2144 82 0 3 chr6 169761470 169761789 -19517765 - AluY SINE Alu 0 318 1 905 290 136 35 chr6 169761789 169762817 -19516737 - L1MC4 LINE L1 -4989 1407 57 614 174 0 9 chr6 169763185 169763294 -19516260 - MLT1A1 LTR MaLR 0 365 258 * 1131 205 7 103 chr6 169763293 169763742 -19515812 - MLT1A1 LTR MaLR -35 393 1 350 283 0 0 chr6 169763771 169763863 -19515691 + MIR SINE MIR 82 173 -89 1694 281 249 52 chr6 169764562 169765626 -19513928 - L2 LINE L2 -1297 2017 629 843 205 12 12 chr6 169765626 169765787 -19513767 + FRAM SINE Alu 1 161 -5 1694 281 249 52 chr6 169765787 169766074 -19513480 - L2 LINE L2 -2685 629 400 213 39 0 0 chr6 169766109 169766135 -19513419 + (CA)n Simple_repeat Simple_repeat 1 26 0 461 323 44 48 chr6 169766142 169766458 -19513096 + L1M4 LINE L1 2729 3043 -3103 1520 197 84 0 chr6 169766696 169767016 -19512538 - MER7A DNA MER2_type -1 345 1 2013 141 3 0 chr6 169767030 169767328 -19512226 - AluSx SINE Alu -13 299 1 1778 141 7 46 chr6 169768927 169769233 -19510321 + AluSx SINE Alu 1 294 -18 481 96 0 0 chr6 169769234 169769307 -19510247 + AluSp/q SINE Alu 236 308 -5 2056 126 0 3 chr6 169770550 169770851 -19508703 - AluSc SINE Alu -9 300 1 2032 132 24 12 chr6 169771967 169772300 -19507254 - LTR24B LTR ERV1 -239 337 1 1732 190 83 16 chr6 169772301 169772319 -19507235 - MER34C LTR ERV1 -186 399 384 1591 164 19 99 chr6 169772319 169772691 -19506863 + MER2 DNA MER2_type 3 344 0 1732 190 83 16 chr6 169772691 169773046 -19506508 - MER34C LTR ERV1 -201 384 1 358 314 42 0 chr6 169773051 169773169 -19506385 + MIR SINE MIR 112 234 -28 4341 160 14 0 chr6 169773171 169773883 -19505671 + MER72 LTR ERV1 1 722 0 2152 185 89 46 chr6 169774296 169774679 -19504875 + MER34C LTR ERV1 1 417 -168 1894 196 55 24 chr6 169774679 169775098 -19504456 + Tigger2a DNA MER2_type 3 434 0 2152 185 89 46 chr6 169775098 169775275 -19504279 + MER34C LTR ERV1 417 585 0 22 88 0 0 chr6 169776240 169776297 -19503257 + AT_rich Low_complexity Low_complexity 1 57 0 2049 126 13 0 chr6 169776782 169777083 -19502471 + AluSc SINE Alu 1 305 -4 357 238 139 0 chr6 169778528 169778629 -19500925 - MLT1E2-int LTR MaLR -320 1051 937 485 306 20 7 chr6 169778758 169778905 -19500649 - MLT1E2-int LTR MaLR -518 853 705 1598 250 63 39 chr6 169779097 169779669 -19499885 - MLT1E2-int LTR MaLR -771 600 15 1618 236 172 40 chr6 169779676 169780227 -19499327 - MLT1E2 LTR MaLR 0 626 3 499 308 86 40 chr6 169780233 169780656 -19498898 + L1M4 LINE L1 3631 4090 -2056 1779 128 57 7 chr6 169780656 169780937 -19498617 + AluSc SINE Alu 1 295 -14 499 308 86 40 chr6 169780937 169781095 -19498459 + L1M4 LINE L1 4090 4239 -1907 323 268 113 33 chr6 169781761 169782218 -19497336 + L1M2 LINE L1 4980 5460 -749 297 0 0 0 chr6 169783553 169783586 -19495968 + (TG)n Simple_repeat Simple_repeat 2 34 0 583 166 18 130 chr6 169783651 169783874 -19495680 - L1MCa LINE L1 -4065 2361 2164 662 267 77 58 chr6 169783937 169784735 -19494819 - L1MC4 LINE L1 -743 5403 4622 1901 140 0 11 chr6 169784735 169785040 -19494514 - AluY SINE Alu 0 302 1 662 267 77 58 chr6 169785040 169786256 -19493298 - L1MC4 LINE L1 -1524 4622 4579 1280 56 0 0 chr6 169786256 169786416 -19493138 - L1PA3 LINE L1 -1 6154 5995 662 267 77 58 chr6 169786416 169786619 -19492935 - L1MC4 LINE L1 -1567 4579 4381 13533 159 25 2 chr6 169786741 169789016 -19490538 + Tigger1 DNA MER2_type 1 2328 -90 4633 193 29 3 chr6 169789016 169790462 -19489092 + L1P4 LINE L1 4186 5670 -496 2353 97 0 6 chr6 169790462 169790802 -19488752 + AluSg SINE Alu 1 310 0 4633 193 29 3 chr6 169790802 169790879 -19488675 + L1P4 LINE L1 5670 5744 -422 236 287 133 7 chr6 169790900 169791043 -19488511 + L1MDa LINE L1 1816 1976 -4564 31 68 0 0 chr6 169791541 169791600 -19487954 + AT_rich Low_complexity Low_complexity 1 59 0 272 330 28 50 chr6 169791771 169791984 -19487570 + L1MDa LINE L1 3808 4016 -2524 1482 79 53 0 chr6 169791984 169792195 -19487359 - AluY SINE Alu 0 302 82 272 330 28 50 chr6 169792195 169792262 -19487292 + L1MDa LINE L1 4016 4083 -2457 682 310 123 43 chr6 169792304 169793108 -19486446 + L1MDa LINE L1 4152 5019 -1521 337 307 94 0 chr6 169793128 169793255 -19486299 - L1ME2 LINE L1 -301 5863 5725 473 277 76 4 chr6 169793265 169793503 -19486051 - L1ME2 LINE L1 -870 5276 5022 374 319 69 23 chr6 169793541 169793757 -19485797 - L1ME2 LINE L1 -2031 4115 3890 1817 227 84 58 chr6 169795893 169796461 -19483093 + L1ME1 LINE L1 15 597 -5943 647 266 19 39 chr6 169796513 169796720 -19482834 - MLT1C LTR MaLR -262 205 3 241 307 45 0 chr6 169796721 169796809 -19482745 + L1ME1 LINE L1 352 443 -5980 2133 120 0 10 chr6 169796930 169797230 -19482324 + AluSq SINE Alu 6 302 -11 1043 200 73 61 chr6 169797261 169797701 -19481853 + L1ME1 LINE L1 4703 5147 -1393 234 138 69 43 chr6 169797707 169797823 -19481731 + (TA)n Simple_repeat Simple_repeat 2 120 0 2133 253 54 20 chr6 169797842 169799195 -19480359 + L1ME1 LINE L1 5146 6553 -7 441 282 58 10 chr6 169799252 169799458 -19480096 + L1ME1 LINE L1 1722 1937 -5185 956 278 69 43 chr6 169799482 169800116 -19479438 + L1ME1 LINE L1 2478 3128 -3994 2715 249 34 54 chr6 169800170 169801663 -19477891 + L1ME1 LINE L1 5172 6616 -345 2084 140 0 0 chr6 169801663 169801971 -19477583 + AluSx SINE Alu 1 308 -4 2715 249 34 54 chr6 169801971 169802302 -19477252 + L1ME1 LINE L1 6616 6952 -9 2157 79 57 0 chr6 169802830 169803109 -19476445 - AluSq SINE Alu -18 295 1 2045 214 68 63 chr6 169803480 169804023 -19475531 - MLT2B3 LTR ERVL -8 546 1 6618 83 20 1 chr6 169804237 169805164 -19474390 - L1MA1 LINE L1 -4 6298 5354 20653 178 103 27 chr6 169805186 169807162 -19472392 - L1P LINE L1 -1112 5034 3210 9998 66 7 1 chr6 169807162 169809257 -19470297 - L1PA6 LINE L1 -3 6151 4049 20653 178 103 27 chr6 169809257 169811949 -19467605 - L1P LINE L1 -2936 3210 11 28 79 0 0 chr6 169812625 169812688 -19466866 + AT_rich Low_complexity Low_complexity 1 63 0 1235 100 19 52 chr6 169813344 169813661 -19465893 + THE1B LTR MaLR 1 364 0 285 370 10 0 chr6 169813661 169813761 -19465793 - MIR SINE MIR -143 119 19 2683 123 49 0 chr6 169814040 169814448 -19465106 - MSTA LTR MaLR 0 428 1 2699 108 3 0 chr6 169815015 169815387 -19464167 - THE1C LTR MaLR 0 375 3 1056 201 32 0 chr6 169815432 169815621 -19463933 + MLT1A1 LTR MaLR 171 365 0 213 65 0 0 chr6 169816227 169816258 -19463296 + (T)n Simple_repeat Simple_repeat 1 31 0 201 309 0 0 chr6 169816666 169816721 -19462833 + CT-rich Low_complexity Low_complexity 17 71 0 340 381 82 16 chr6 169817614 169817929 -19461625 - L2 LINE L2 -738 2576 2241 1939 175 64 30 chr6 169818410 169818949 -19460605 - MLT2A2 LTR ERVL 0 554 1 1995 154 0 3 chr6 169819394 169819712 -19459842 - AluSx SINE Alu 0 312 1 41 48 0 0 chr6 169819796 169819858 -19459696 + AT_rich Low_complexity Low_complexity 1 62 0 2204 103 47 33 chr6 169820222 169820581 -19458973 + THE1B LTR MaLR 1 364 0 10301 207 19 5 chr6 169820656 169824023 -19455531 - L1PA16 LINE L1 0 6166 2755 3408 231 31 27 chr6 169824064 169824881 -19454673 - MER21B LTR ERV1 -1 862 43 321 280 0 0 chr6 169824879 169824954 -19454600 - MER21B LTR ERV1 -769 94 20 * 260 267 0 40 chr6 169824982 169825057 -19454497 - MER21B LTR ERV1 -791 72 1 2419 86 0 0 chr6 169825091 169825395 -19454159 + AluY SINE Alu 1 304 -7 721 250 32 16 chr6 169825884 169826072 -19453482 - MIR SINE MIR -61 201 11 987 305 104 24 chr6 169826412 169826989 -19452565 + MLT2F LTR ERVL 37 659 -4 638 313 61 56 chr6 169826996 169827645 -19451909 + ERVL LTR ERVL 11 682 -5032 446 315 44 6 chr6 169827672 169827853 -19451701 + ERVL LTR ERVL 798 985 -4779 * 458 263 73 0 chr6 169827852 169827989 -19451565 + HERVL LTR ERVL 4402 4548 -1106 925 266 27 30 chr6 169828035 169828370 -19451184 - L1MC4 LINE L1 -611 7431 7098 245 211 28 0 chr6 169828410 169828481 -19451073 + (TATATG)n Simple_repeat Simple_repeat 4 76 0 25 75 0 0 chr6 169829433 169829486 -19450068 + AT_rich Low_complexity Low_complexity 1 53 0 256 229 0 0 chr6 169829939 169829987 -19449567 + L1MB7 LINE L1 5512 5559 -605 812 259 17 9 chr6 169829991 169830223 -19449331 + L1ME3A LINE L1 1 234 -5811 * 4166 188 16 26 chr6 169830219 169831116 -19448438 - L1MB3 LINE L1 0 6183 5296 3021 128 26 78 chr6 169831178 169831231 -19448323 + LTR26 LTR ERV1 1 55 -548 201 39 0 0 chr6 169831231 169831257 -19448297 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3021 128 26 78 chr6 169831257 169831674 -19447880 + LTR26 LTR ERV1 55 438 -165 2091 125 16 3 chr6 169831674 169831977 -19447577 + AluSc SINE Alu 3 309 0 3021 128 26 78 chr6 169831977 169832081 -19447473 + LTR26 LTR ERV1 438 546 -57 1562 179 15 0 chr6 169832250 169832513 -19447041 + LOR1-int LTR ERV1 6829 7095 -1025 1334 155 0 38 chr6 169832522 169832761 -19446793 + MER49 LTR ERV1 3 232 -691 3505 137 34 3 chr6 169833125 169833708 -19445846 + LTR26 LTR ERV1 1 601 -2 2426 230 51 71 chr6 169833715 169834964 -19444590 + L1ME3A LINE L1 238 1464 -4853 * 2472 229 49 8 chr6 169834960 169835575 -19443979 + L1MB7 LINE L1 5545 6184 0 326 283 68 42 chr6 169835644 169835936 -19443618 + L1ME3A LINE L1 4664 4972 -1592 3560 102 58 53 chr6 169835936 169836541 -19443013 + MER4B LTR ERV1 3 610 0 326 283 68 42 chr6 169836541 169836676 -19442878 + L1ME3A LINE L1 4972 5102 -1462 309 277 68 40 chr6 169836866 169837043 -19442511 + L1ME3A LINE L1 5329 5510 -1054 2041 136 52 22 chr6 169837056 169837460 -19442094 - L1MA8 LINE L1 -5 6286 5871 2893 107 86 23 chr6 169837460 169837935 -19441619 + MER4B LTR ERV1 1 505 -105 1380 155 4 0 chr6 169837935 169838161 -19441393 - L1MA8 LINE L1 -726 5586 5360 24 53 0 0 chr6 169838183 169838221 -19441333 + AT_rich Low_complexity Low_complexity 1 38 0 995 301 48 28 chr6 169838347 169838921 -19440633 + L1ME3A LINE L1 5718 6301 -287 527 242 76 6 chr6 169840386 169840543 -19439011 + L2 LINE L2 1843 2010 -1304 385 258 10 0 chr6 169840808 169840905 -19438649 + MLT1D LTR MaLR 402 499 -6 239 261 31 0 chr6 169841310 169841375 -19438179 + L1MD3 LINE L1 6610 6676 -1319 453 277 69 17 chr6 169841575 169841806 -19437748 + L1ME4a LINE L1 5649 5891 -230 206 265 20 0 chr6 169841935 169841984 -19437570 - MIR SINE MIR -148 114 65 29 0 0 0 chr6 169842318 169842347 -19437207 + AT_rich Low_complexity Low_complexity 1 29 0 302 0 26 0 chr6 169842951 169842989 -19436565 + (TG)n Simple_repeat Simple_repeat 1 39 0 443 295 160 6 chr6 169843143 169843299 -19436255 - MER5A DNA MER1_type 0 189 10 204 318 87 27 chr6 169843300 169843438 -19436116 + MIR SINE MIR 2 146 -65 427 215 97 65 chr6 169843938 169844124 -19435430 + LTR41 LTR ERVL 1 192 -581 308 303 93 78 chr6 169844176 169844575 -19434979 + LTR41 LTR ERVL 357 761 -12 2443 107 13 19 chr6 169844598 169844973 -19434581 - THE1C LTR MaLR -2 373 1 775 324 60 39 chr6 169845645 169846165 -19433389 + L2 LINE L2 2783 3309 -4 484 354 46 0 chr6 169847037 169847232 -19432322 + MIR SINE MIR 11 214 -48 694 322 30 26 chr6 169847258 169847491 -19432063 - MIR SINE MIR -21 241 8 225 194 56 42 chr6 169847517 169847589 -19431965 - MIR SINE MIR -99 109 37 1899 152 30 6 chr6 169848236 169848572 -19430982 - MER2 DNA MER2_type 0 344 1 309 256 0 12 chr6 169849974 169850056 -19429498 + MLT1K LTR MaLR 492 572 -16 22 0 0 0 chr6 169850409 169850431 -19429123 + AT_rich Low_complexity Low_complexity 1 22 0 502 242 7 0 chr6 169851193 169851483 -19428071 + (TA)n Simple_repeat Simple_repeat 1 292 0 2306 126 33 8 chr6 169853246 169853610 -19425944 - THE1C LTR MaLR 0 375 3 227 222 0 0 chr6 169853640 169853685 -19425869 + A-rich Low_complexity Low_complexity 1 45 0 27 0 0 0 chr6 169854130 169854157 -19425397 + AT_rich Low_complexity Low_complexity 1 27 0 386 286 37 97 chr6 169854180 169854641 -19424913 + L1MCb LINE L1 35 740 -5682 2174 90 3 42 chr6 169854683 169854994 -19424560 - AluSg SINE Alu -11 299 1 1005 141 7 0 chr6 169855515 169855664 -19423890 - AluSg SINE Alu -160 150 1 4976 232 106 77 chr6 169855726 169856181 -19423373 - L1MD3 LINE L1 -153 7842 7402 397 269 0 19 chr6 169856181 169856289 -19423265 - MLT1F1 LTR MaLR -456 111 6 4976 232 106 77 chr6 169856289 169857922 -19421632 - L1MD3 LINE L1 -593 7402 5583 1665 174 87 0 chr6 169858354 169858710 -19420844 + L1MA4 LINE L1 5809 6195 -105 295 229 14 76 chr6 169858728 169858872 -19420682 - L1MD3 LINE L1 -1778 4368 4234 1306 212 62 0 chr6 169859693 169859981 -19419573 - LTR43 LTR ERV1 -121 481 176 213 297 132 11 chr6 169860258 169860349 -19419205 + MIR SINE MIR 45 146 -62 346 196 43 54 chr6 169860508 169860600 -19418954 - LTR8 LTR ERV1 -14 677 587 479 279 73 61 chr6 169861585 169862269 -19417285 - L1MC5 LINE L1 -45 7916 7225 237 255 93 56 chr6 169862313 169862529 -19417025 - HAL1 LINE L1 -5 2502 2279 634 249 60 74 chr6 169863127 169863628 -19415926 - L1ME4a LINE L1 -11 6110 5617 259 260 52 0 chr6 169863669 169863746 -19415808 + MIR SINE MIR 182 262 0 646 275 77 4 chr6 169863891 169864124 -19415430 - MIR SINE MIR 0 262 13 1336 155 13 4 chr6 169866443 169866675 -19412879 - MER2 DNA MER2_type 0 345 112 41 48 0 0 chr6 169866696 169866758 -19412796 + AT_rich Low_complexity Low_complexity 1 62 0 32 0 0 0 chr6 169867050 169867082 -19412472 + AT_rich Low_complexity Low_complexity 1 32 0 320 321 42 37 chr6 169868471 169868661 -19410893 - L2 LINE L2 -124 3189 2999 1953 138 0 3 chr6 169869368 169869681 -19409873 + AluSq SINE Alu 1 312 0 1998 286 53 6 chr6 169869692 169870408 -19409146 + L1MEc LINE L1 35 784 -5612 466 257 68 8 chr6 169870409 169870622 -19408932 - LTR54B LTR ERV1 -221 277 1 2990 174 12 3 chr6 169870631 169871200 -19408354 - L1 LINE L1 -916 6292 5719 1241 203 21 12 chr6 169871201 169871556 -19407998 + LTR54 LTR ERV1 66 510 0 555 143 18 6 chr6 169871569 169871699 -19407855 + L1 LINE L1 5236 5363 -783 5848 202 56 74 chr6 169871833 169874392 -19405162 - L1 LINE L1 -3723 3485 1 292 359 28 19 chr6 169874745 169874851 -19404703 + L2 LINE L2 3146 3252 -20 311 254 0 0 chr6 169875767 169875834 -19403720 - MLT1E2-int LTR MaLR -320 1051 985 466 306 21 7 chr6 169875998 169876142 -19403412 - MLT1E2-int LTR MaLR -521 850 705 1510 253 63 40 chr6 169876334 169876907 -19402647 - MLT1E2-int LTR MaLR -771 600 15 1570 240 172 40 chr6 169876914 169877465 -19402089 - MLT1E2 LTR MaLR 0 626 3 1549 165 75 14 chr6 169877588 169877739 -19401815 + THE1C LTR MaLR 33 173 -202 213 39 0 0 chr6 169877739 169877765 -19401789 + (TC)n Simple_repeat Simple_repeat 1 26 0 1549 165 75 14 chr6 169877765 169877928 -19401626 + THE1C LTR MaLR 173 373 -2 2256 109 0 0 chr6 169878086 169878380 -19401174 - AluSq SINE Alu -18 295 2 2399 180 68 36 chr6 169879136 169879692 -19399862 + L1MB8 LINE L1 5604 6177 -1 280 218 36 25 chr6 169880344 169880444 -19399110 - L1M4c LINE L1 -4983 1401 1308 247 255 50 57 chr6 169880808 169880949 -19398605 + L2 LINE L2 3067 3206 -107 19145 84 1 4 chr6 169881054 169883682 -19395872 - L1P LINE L1 -3063 3083 462 685 176 0 8 chr6 169883787 169883906 -19395648 - AluSp SINE Alu -195 118 1 1116 169 3 185 chr6 169884039 169884401 -19395153 - L1PA13 LINE L1 -6157 630 335 * 8399 178 24 7 chr6 169884395 169886112 -19393442 - L1PA12 LINE L1 -5577 2004 1 2005 43 0 4 chr6 169886188 169886423 -19393131 + AluY SINE Alu 33 266 -45 650 231 13 7 chr6 169886880 169887030 -19392524 - MLT1B LTR MaLR 0 374 227 298 244 75 80 chr6 169887119 169887332 -19392222 - MLT1J LTR MaLR -189 322 111 1686 129 96 0 chr6 169888134 169888405 -19391149 + AluSq SINE Alu 1 297 -16 183 80 0 0 chr6 169888406 169888431 -19391123 + (TA)n Simple_repeat Simple_repeat 1 25 0 28 0 0 0 chr6 169888557 169888585 -19390969 + AT_rich Low_complexity Low_complexity 1 28 0 3716 270 41 12 chr6 169888770 169890048 -19389506 + L1M4 LINE L1 4065 5378 -768 13878 38 3 1 chr6 169890160 169892280 -19387274 - L1P2 LINE L1 -393 5762 3637 21 0 0 0 chr6 169894171 169894192 -19385362 + AT_rich Low_complexity Low_complexity 1 21 0 455 303 34 0 chr6 169897377 169897496 -19382058 + L2 LINE L2 3150 3272 0 316 206 15 0 chr6 169898479 169898547 -19381007 - L1MCa LINE L1 -4362 2064 1996 186 327 168 0 chr6 169899652 169899759 -19379795 + L2 LINE L2 2933 3057 -256 627 271 73 35 chr6 169899862 169900179 -19379375 + L1MC5 LINE L1 7302 7630 -331 338 265 6 62 chr6 169900240 169900402 -19379152 + L1MC5 LINE L1 7759 7911 -50 21 36 0 0 chr6 169900529 169900557 -19378997 + AT_rich Low_complexity Low_complexity 1 28 0 4462 164 43 31 chr6 169950891 169951933 -19327621 + L1PB4 LINE L1 5100 6155 -1 718 125 0 0 chr6 169952248 169952352 -19327202 + U6 snRNA snRNA 4 107 0 3372 201 37 4 chr6 169952355 169953085 -19326469 + L1PA15 LINE L1 1657 2358 -4505 5116 173 38 15 chr6 169953087 169953656 -19325898 + L1PA15 LINE L1 5158 5713 -1168 2207 106 0 3 chr6 169953656 169953957 -19325597 + AluSx SINE Alu 1 300 -12 5116 173 38 15 chr6 169953957 169954586 -19324968 + L1PA15 LINE L1 5713 6394 -487 2256 112 27 30 chr6 169954586 169954951 -19324603 + THE1B LTR MaLR 1 364 0 5116 173 38 15 chr6 169954951 169955427 -19324127 + L1PA15 LINE L1 6394 6858 -23 304 372 126 9 chr6 169955673 169955904 -19323650 + MIR SINE MIR 3 260 -2 473 189 35 101 chr6 169957849 169957998 -19321556 + L1ME3A LINE L1 5818 5959 -211 855 243 69 6 chr6 169958009 169958292 -19321262 - L1ME3 LINE L1 -27 6137 5835 1962 63 4 0 chr6 169958344 169958598 -19320956 - L1PA7 LINE L1 -137 6017 5763 * 3819 45 60 38 chr6 169958597 169958662 -19320892 - L1PA6 LINE L1 -269 5885 5823 2212 102 0 3 chr6 169958662 169958956 -19320598 - AluY SINE Alu -18 293 1 3819 45 60 38 chr6 169958956 169959421 -19320133 - L1PA6 LINE L1 -331 5823 5343 265 367 0 0 chr6 169959487 169959577 -19319977 - L2 LINE L2 -34 3279 3190 2146 123 0 0 chr6 169959693 169959985 -19319569 + AluSx SINE Alu 6 297 -15 1504 310 182 34 chr6 169960080 169961013 -19318541 - L2 LINE L2 -1991 1323 253 1634 159 144 9 chr6 169961013 169961353 -19318201 + LOR1b LTR ERV1 1 386 -75 22815 38 6 2 chr6 169961846 169965436 -19314118 - L1PA5 LINE L1 -2 6152 2549 446 297 54 43 chr6 169965845 169966121 -19313433 - L1MEc LINE L1 -6090 306 28 279 280 58 89 chr6 169967494 169967554 -19312000 + MLT1H LTR MaLR 31 91 -458 1499 100 36 5 chr6 169967554 169967774 -19311780 - MER30 DNA MER1_type 0 230 4 279 280 58 89 chr6 169967774 169967938 -19311616 + MLT1H LTR MaLR 91 248 -301 540 0 0 0 chr6 169968250 169968310 -19311244 + (TTTTA)n Simple_repeat Simple_repeat 2 61 0 300 294 113 6 chr6 169969995 169970172 -19309382 - MIR SINE MIR -2 260 65 2067 117 7 0 chr6 169970644 169970926 -19308628 + AluSc SINE Alu 1 284 -25 265 283 108 33 chr6 169970961 169971081 -19308473 + MIR3 SINE MIR 39 167 -41 203 281 0 35 chr6 169971723 169971780 -19307774 - L2 LINE L2 0 3272 3218 1637 212 120 7 chr6 169973292 169973750 -19305804 - L1MB8 LINE L1 0 6676 6167 685 333 24 4 chr6 169973938 169974184 -19305370 - MIR SINE MIR -5 257 7 5716 188 48 19 chr6 169974206 169975093 -19304461 - L1MC3 LINE L1 0 7785 6850 309 51 0 0 chr6 169975093 169975132 -19304422 + (TG)n Simple_repeat Simple_repeat 2 40 0 5716 188 48 19 chr6 169975132 169975484 -19304070 - L1MC3 LINE L1 -935 6850 6510 1839 256 40 17 chr6 169975457 169976109 -19303445 - L1MB8 LINE L1 -1328 5316 4650 * 2147 271 38 38 chr6 169976133 169976899 -19302655 - L1MB8 LINE L1 -5761 781 16 727 294 138 14 chr6 169977066 169977342 -19302212 + L2 LINE L2 2840 3149 -164 304 253 19 86 chr6 169977508 169977670 -19301884 - L1ME4a LINE L1 -4 6117 5967 255 338 54 49 chr6 169977791 169978182 -19301372 - L1ME4a LINE L1 -372 5749 5357 5942 109 39 0 chr6 169978218 169979258 -19300296 - L1PA14 LINE L1 -2 6159 5104 180 219 0 0 chr6 169980941 169980982 -19298572 + (CA)n Simple_repeat Simple_repeat 2 42 0 2355 138 70 0 chr6 169981589 169981988 -19297566 - MSTA LTR MaLR -1 427 1 365 150 0 62 chr6 169982310 169982390 -19297164 + L1PA7 LINE L1 6079 6153 -1 1419 201 28 21 chr6 169982593 169982881 -19296673 + AluJb SINE Alu 1 290 -22 1215 133 0 0 chr6 169983655 169983828 -19295726 - AluSp SINE Alu -7 306 134 1844 104 4 18 chr6 169983843 169984121 -19295433 - AluSc SINE Alu -35 274 1 1958 177 5 15 chr6 169984851 169985198 -19294356 - MLT1A1 LTR MaLR 0 365 1 183 259 56 0 chr6 169985240 169985294 -19294260 - MIR SINE MIR -120 142 86 207 100 0 0 chr6 169986385 169986415 -19293139 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 387 149 119 0 chr6 169986415 169986482 -19293072 - MER72 LTR ERV1 -63 659 585 367 43 0 0 chr6 169988925 169988971 -19290583 + MADE1 DNA Mariner 1 46 -34 553 251 146 31 chr6 169989569 169989960 -19289594 - L1MEc LINE L1 -2956 3259 2824 723 251 6 12 chr6 169990188 169990359 -19289195 - MER58A DNA MER1_type -15 209 40 377 331 100 21 chr6 169990576 169991335 -19288219 - L1MEc LINE L1 -4037 2359 1541 240 224 106 35 chr6 169991494 169991579 -19287975 - MLT1K LTR MaLR -120 468 378 5549 106 48 2 chr6 169991878 169992719 -19286835 + L1PA11 LINE L1 5296 6174 0 22 0 0 0 chr6 169992724 169992746 -19286808 + AT_rich Low_complexity Low_complexity 1 22 0 2205 96 6 13 chr6 169993280 169993594 -19285960 + AluSx SINE Alu 1 312 0 2536 271 57 20 chr6 169994271 169995498 -19284056 + L1 LINE L1 2473 3745 -2401 661 203 71 35 chr6 169995497 169995694 -19283860 + L1MCa LINE L1 159 362 -6202 * 2133 204 35 4 chr6 169995711 169996371 -19283183 + L1MCa LINE L1 684 1361 -4851 319 241 63 29 chr6 169997136 169997310 -19282244 + L1MC4a LINE L1 5739 5918 -1890 21 0 0 0 chr6 169997624 169997645 -19281909 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr6 169998273 169998311 -19281243 + AT_rich Low_complexity Low_complexity 1 38 0 2434 53 10 3 chr6 169999483 169999785 -19279769 - AluY SINE Alu -7 304 1 1704 199 38 3 chr6 169999950 170000342 -19279212 + L1 LINE L1 4888 5293 -853 308 305 86 50 chr6 170000348 170000974 -19278580 - L1M4 LINE L1 -1714 4432 3784 247 258 88 42 chr6 170001084 170001344 -19278210 - L1M4 LINE L1 -2863 3283 3012 15193 88 16 10 chr6 170001457 170003995 -19275559 + L1P3 LINE L1 3128 5677 -477 2017 137 0 3 chr6 170004069 170004368 -19275186 + AluSx SINE Alu 1 298 -14 27 49 0 0 chr6 170004433 170004474 -19275080 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr6 170005700 170005736 -19273818 + AT_rich Low_complexity Low_complexity 1 36 0 343 216 17 126 chr6 170005795 170006018 -19273536 - LTR28 LTR ERV1 -280 740 578 * 3072 204 272 56 chr6 170006008 170007113 -19272441 - MER52A LTR ERV1 -411 1344 1 1490 143 54 57 chr6 170007891 170008266 -19271288 - MER67C LTR ERV1 -262 252 1 3152 106 49 10 chr6 170008351 170008843 -19270711 - MER9 LTR ERVK 0 511 1 638 263 300 11 chr6 170008907 170009257 -19270297 + L2 LINE L2 2863 3313 0 231 314 52 66 chr6 170009270 170009541 -19270013 - L2 LINE L2 -821 2493 2227 403 326 115 59 chr6 170009673 170009813 -19269741 - L2 LINE L2 -109 3204 3073 2069 124 3 13 chr6 170009813 170010128 -19269426 + AluSx SINE Alu 1 312 0 403 326 115 59 chr6 170010128 170010291 -19269263 - L2 LINE L2 -240 3073 2884 249 267 8 67 chr6 170010932 170011052 -19268502 + L1MC4 LINE L1 6614 6726 -1316 317 261 22 37 chr6 170011263 170011397 -19268157 - MER103 DNA DNA -12 154 23 2424 79 7 0 chr6 170012344 170012649 -19266905 - AluY SINE Alu -4 307 1 1274 292 103 17 chr6 170012820 170013413 -19266141 + L2 LINE L2 2270 3055 -258 2252 71 6 59 chr6 170014615 170014937 -19264617 - AluSg SINE Alu -5 305 1 256 305 95 0 chr6 170015540 170015635 -19263919 + MLT1J LTR MaLR 335 438 -73 746 283 48 33 chr6 170016585 170016917 -19262637 + L1ME3 LINE L1 5795 6134 -28 1408 198 25 68 chr6 170016918 170017242 -19262312 - AluJo SINE Alu 0 312 3 254 26 53 0 chr6 170017532 170017570 -19261984 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2117 127 3 0 chr6 170017572 170017855 -19261699 - AluSx SINE Alu -28 284 1 1812 173 48 6 chr6 170018061 170018419 -19261135 - MER93b LTR ERV1 0 373 1 22 88 0 0 chr6 170018561 170018618 -19260936 + AT_rich Low_complexity Low_complexity 1 57 0 262 284 0 0 chr6 170018920 170018987 -19260567 + MIR SINE MIR 82 148 -60 383 100 62 62 chr6 170019152 170019232 -19260322 + MADE1 DNA Mariner 1 80 0 2106 113 10 0 chr6 170021299 170021591 -19257963 - AluSg SINE Alu -15 295 1 2246 113 0 3 chr6 170021591 170021891 -19257663 - AluSq SINE Alu -14 299 1 5991 153 24 17 chr6 170022333 170022687 -19256867 - L1PB1 LINE L1 -1 6150 5800 339 25 0 0 chr6 170022687 170022727 -19256827 + (TG)n Simple_repeat Simple_repeat 2 41 0 5991 153 24 17 chr6 170022727 170024182 -19255372 - L1PB1 LINE L1 -351 5800 4323 227 364 30 0 chr6 170026339 170026438 -19253116 + L2 LINE L2 2933 3034 -238 633 288 34 15 chr6 170028189 170028394 -19251160 + MLT1J2 LTR MaLR 5 213 -237 315 217 29 0 chr6 170028763 170028832 -19250722 - L2 LINE L2 -814 2500 2430 26 50 0 0 chr6 170029937 170029977 -19249577 + AT_rich Low_complexity Low_complexity 1 40 0 4223 272 25 50 chr6 170030057 170031661 -19247893 + L1PBa LINE L1 74 1636 -5227 * 5471 169 25 15 chr6 170031629 170032616 -19246938 + L1PB3 LINE L1 1 997 -5207 1009 115 14 7 chr6 170032616 170032764 -19246790 - Charlie3 DNA MER1_type -4 2706 2558 1858 163 77 6 chr6 170032764 170033114 -19246440 - THE1C LTR MaLR 0 375 1 4111 112 82 6 chr6 170033114 170033738 -19245816 - THE1C-int LTR MaLR 0 1580 910 5409 152 43 1 chr6 170033743 170035466 -19244088 + L1PB3 LINE L1 4410 6209 -2 26 0 0 0 chr6 170035725 170035751 -19243803 + AT_rich Low_complexity Low_complexity 1 26 0 312 314 57 8 chr6 170037040 170037164 -19242390 + MIR SINE MIR 2 131 -131 1844 214 60 68 chr6 170037956 170038441 -19241113 + MER92B LTR ERV1 13 500 -136 2097 106 6 26 chr6 170038441 170038616 -19240938 - AluSx SINE Alu -7 305 128 207 0 0 0 chr6 170038616 170038639 -19240915 + (TG)n Simple_repeat Simple_repeat 2 24 0 189 0 0 0 chr6 170038638 170038659 -19240895 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 2097 106 6 26 chr6 170038639 170038794 -19240760 - AluSx SINE Alu -184 128 1 1844 214 60 68 chr6 170038794 170038925 -19240629 + MER92B LTR ERV1 500 624 -12 326 338 32 32 chr6 170038941 170039098 -19240456 + L2 LINE L2 3108 3264 -8 210 178 14 27 chr6 170040415 170040488 -19239066 + (TA)n Simple_repeat Simple_repeat 2 73 0 267 31 0 0 chr6 170040735 170040767 -19238787 + (TA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr6 170041233 170041254 -19238300 + AT_rich Low_complexity Low_complexity 1 21 0 630 213 18 41 chr6 170041762 170041931 -19237623 + L1M4 LINE L1 25 189 -6353 * 2740 210 60 38 chr6 170041910 170042748 -19236806 + L1M4 LINE L1 854 1709 -4833 253 374 19 0 chr6 170042835 170042942 -19236612 + L2 LINE L2 2266 2374 -940 1787 175 41 36 chr6 170043168 170043556 -19235998 - MLT1B LTR MaLR 0 390 1 356 204 0 31 chr6 170043572 170043670 -19235884 + L1M4 LINE L1 2003 2097 -4549 1586 179 46 4 chr6 170043772 170044052 -19235502 + AluJo SINE Alu 1 292 -20 2225 109 0 28 chr6 170046104 170046425 -19233129 + AluSx SINE Alu 1 312 0 450 43 0 29 chr6 170046564 170046633 -19232921 - AluY SINE Alu -8 303 237 343 279 110 15 chr6 170047038 170047174 -19232380 + L2 LINE L2 680 828 -2486 327 326 14 0 chr6 170047183 170047324 -19232230 + L2 LINE L2 945 1087 -2227 942 286 39 33 chr6 170047839 170048175 -19231379 + L2 LINE L2 1338 1675 -1639 383 292 8 25 chr6 170048230 170048350 -19231204 - MIR SINE MIR -73 189 72 1382 199 41 55 chr6 170048682 170048974 -19230580 + AluJo SINE Alu 1 288 -24 652 316 35 59 chr6 170050061 170050466 -19229088 + L1MEc LINE L1 183 577 -5986 1335 213 57 10 chr6 170050541 170050837 -19228717 - MLT1C LTR MaLR -2 465 156 360 276 141 30 chr6 170050837 170051036 -19228518 + L1MEc LINE L1 1370 1590 -4794 254 236 0 34 chr6 170051036 170051125 -19228429 + T-rich Low_complexity Low_complexity 4 89 0 849 236 52 23 chr6 170051411 170051827 -19227727 + L1MC4 LINE L1 6694 7400 -488 1190 271 30 38 chr6 170051853 170051925 -19227629 - MSTD LTR MaLR 0 396 325 1779 173 45 6 chr6 170051925 170052260 -19227294 - MER7A DNA MER2_type 0 346 1 1190 271 30 38 chr6 170052260 170052586 -19226968 - MSTD LTR MaLR -71 325 1 1342 259 84 2 chr6 170052586 170053027 -19226527 + L1MC4 LINE L1 7425 7901 -141 21 57 0 0 chr6 170053119 170053154 -19226400 + AT_rich Low_complexity Low_complexity 1 35 0 2089 120 0 0 chr6 170053284 170053568 -19225986 + AluSg1 SINE Alu 1 284 -25 26 30 0 0 chr6 170053568 170053601 -19225953 + AT_rich Low_complexity Low_complexity 1 33 0 8961 105 10 3 chr6 170054861 170056978 -19222576 + L1PA8A LINE L1 3991 6119 -12 474 314 91 44 chr6 170057053 170057461 -19222093 - L2 LINE L2 -1 3271 2845 369 0 0 0 chr6 170057790 170057831 -19221723 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2194 73 18 0 chr6 170057833 170058108 -19221446 - AluSp SINE Alu -31 282 3 1731 152 60 39 chr6 170058144 170058479 -19221075 + MER61A LTR ERV1 1 342 -1 462 283 14 0 chr6 170058542 170058687 -19220867 - L1MEc LINE L1 -6209 187 41 258 309 129 26 chr6 170058918 170059112 -19220442 - MIR SINE MIR -13 249 36 2848 16 0 0 chr6 170060255 170060570 -19218984 - AluYb8 SINE Alu -3 315 1 1817 123 26 7 chr6 170061438 170061707 -19217847 - THE1B LTR MaLR -1 363 90 2239 187 7 19 chr6 170061881 170062298 -19217256 - MLT2D LTR ERVL 0 414 3 282 289 98 40 chr6 170062875 170063048 -19216506 - MIR SINE MIR -8 254 72 856 232 11 5 chr6 170063790 170063980 -19215574 + L1PA16 LINE L1 5959 6149 -17 404 285 73 8 chr6 170064939 170065062 -19214492 - MIR SINE MIR -108 154 24 211 203 31 0 chr6 170065196 170065260 -19214294 + (TA)n Simple_repeat Simple_repeat 1 66 0 284 286 22 11 chr6 170065763 170065854 -19213700 + GA-rich Low_complexity Low_complexity 3 94 0 32 0 0 0 chr6 170065927 170065959 -19213595 + AT_rich Low_complexity Low_complexity 1 32 0 1731 185 3 10 chr6 170065959 170066273 -19213281 + AluJb SINE Alu 1 312 0 344 315 39 8 chr6 170066803 170066933 -19212621 + L3 LINE CR1 1335 1468 -109 387 325 71 18 chr6 170067031 170067200 -19212354 + MIR SINE MIR 29 206 -56 2483 93 65 0 chr6 170067832 170068186 -19211368 - MER51B LTR ERV1 0 377 1 4093 146 139 118 chr6 170068196 170068487 -19211067 - MER51B-int LTR ERV1 -11 7805 7522 2068 107 16 35 chr6 170068487 170068622 -19210932 + AluSc SINE Alu 1 137 -172 387 0 0 0 chr6 170068622 170068665 -19210889 + (TAA)n Simple_repeat Simple_repeat 2 44 0 2068 107 16 35 chr6 170068665 170068839 -19210715 + AluSc SINE Alu 137 304 -5 4093 146 139 118 chr6 170068839 170069674 -19209880 - MER51B-int LTR ERV1 -294 7522 6655 3393 135 25 2 chr6 170069669 170070357 -19209197 - MER51B-int LTR ERV1 -1101 6436 5686 * 353 300 52 32 chr6 170070368 170070589 -19208965 - L1 LINE L1 -3724 2422 2201 554 262 155 19 chr6 170071260 170071531 -19208023 - MER21B LTR ERV1 -125 738 431 325 265 41 20 chr6 170071664 170071762 -19207792 - MER21B LTR ERV1 -637 226 127 368 242 21 11 chr6 170071830 170071925 -19207629 - MER21B LTR ERV1 -767 96 1 335 300 8 0 chr6 170071927 170072047 -19207507 - HAL1 LINE L1 -885 1622 1502 776 217 66 20 chr6 170072151 170072349 -19207205 - MIR SINE MIR -32 230 24 2392 154 68 70 chr6 170072818 170073350 -19206204 + LTR26B LTR ERV1 1 531 0 190 379 21 0 chr6 170074207 170074302 -19205252 - L2 LINE L2 -3 3269 3173 22 0 0 0 chr6 170074409 170074431 -19205123 + AT_rich Low_complexity Low_complexity 1 22 0 912 229 16 0 chr6 170076660 170076843 -19202711 + MER5A DNA MER1_type 1 186 -3 441 296 109 9 chr6 170077290 170077510 -19202044 - MIR SINE MIR -14 248 7 2119 124 0 7 chr6 170077941 170078247 -19201307 - AluSx SINE Alu -8 304 1 468 270 58 7 chr6 170078812 170078949 -19200605 + MIR SINE MIR 58 201 -61 25 0 0 0 chr6 170079094 170079119 -19200435 + AT_rich Low_complexity Low_complexity 1 25 0 568 289 68 25 chr6 170079147 170079469 -19200085 + MARNA DNA Mariner 54 389 -197 420 310 32 19 chr6 170079521 170079679 -19199875 - HsTC2 DNA Tc2 -1736 162 3 4008 235 54 102 chr6 170079779 170079975 -19199579 - L1M4 LINE L1 -1150 4996 4792 378 0 0 0 chr6 170079975 170080017 -19199537 + (CA)n Simple_repeat Simple_repeat 2 43 0 4008 235 54 102 chr6 170080017 170080420 -19199134 - L1M4 LINE L1 -1354 4792 4371 667 206 15 8 chr6 170080420 170080551 -19199003 - FLAM_A SINE Alu -1 132 1 4008 235 54 102 chr6 170080551 170081078 -19198476 - L1M4 LINE L1 -1775 4371 3820 2163 135 132 5 chr6 170081078 170081456 -19198098 + MSTA LTR MaLR 1 426 -2 4008 235 54 102 chr6 170081456 170082408 -19197146 - L1M4 LINE L1 -2326 3820 3034 2278 179 36 2 chr6 170082408 170082826 -19196728 - MSTB1 LTR MaLR 0 432 1 4008 235 54 102 chr6 170082826 170083038 -19196516 - L1M4 LINE L1 -3112 3034 2813 315 122 0 0 chr6 170083095 170083144 -19196410 + (TG)n Simple_repeat Simple_repeat 2 50 0 333 311 0 0 chr6 170083181 170083271 -19196283 - L1MC4 LINE L1 -1339 6703 6614 333 257 20 40 chr6 170083210 170083311 -19196243 + L1MC4 LINE L1 6615 6713 -1329 12144 179 83 7 chr6 170083557 170085890 -19193664 + L1M1 LINE L1 13 2521 -5044 620 188 54 0 chr6 170085891 170085964 -19193590 + MLT2B3 LTR ERVL 437 519 -35 360 0 0 0 chr6 170085964 170086004 -19193550 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 620 188 54 0 chr6 170086004 170086042 -19193512 + MLT2B3 LTR ERVL 519 554 0 1901 209 71 59 chr6 170086068 170086614 -19192940 - MLT2B3 LTR ERVL -1 553 1 336 331 30 30 chr6 170086865 170087031 -19192523 - MIR SINE MIR -47 215 50 1442 201 7 13 chr6 170087908 170088206 -19191348 + MER58B DNA MER1_type 37 332 -9 1145 98 46 0 chr6 170089140 170089314 -19190240 + L1MA2 LINE L1 6123 6304 0 1654 123 77 5 chr6 170089338 170089758 -19189796 + MER51A LTR ERV1 1 520 -114 203 0 37 0 chr6 170090702 170090729 -19188825 + (TCTA)n Simple_repeat Simple_repeat 1 28 0 2237 84 3 39 chr6 170091619 170091927 -19187627 - AluSp SINE Alu -16 297 1 483 170 54 27 chr6 170092263 170092375 -19187179 - MER53 DNA DNA -74 115 1 639 0 0 56 chr6 170094153 170094243 -19185311 - L1PA4 LINE L1 0 6155 6071 21 0 0 0 chr6 170094846 170094867 -19184687 + AT_rich Low_complexity Low_complexity 1 21 0 303 247 43 0 chr6 170094887 170094980 -19184574 - L1ME4a LINE L1 -43 6078 5982 1823 95 42 4 chr6 170094995 170095257 -19184297 + AluSc SINE Alu 24 295 -14 485 125 34 0 chr6 170096452 170096540 -19183014 - L1MB1 LINE L1 0 6168 6078 1319 67 0 6 chr6 170097436 170097616 -19181938 + (GAA)n Simple_repeat Simple_repeat 1 179 0 387 41 0 0 chr6 170098598 170098647 -19180907 + (TG)n Simple_repeat Simple_repeat 1 49 0 2524 68 0 0 chr6 170098907 170099216 -19180338 - AluY SINE Alu -2 309 1 1097 159 70 23 chr6 170100259 170100293 -19179261 + MSTB LTR MaLR 203 234 -192 3599 104 32 0 chr6 170100293 170100830 -19178724 - MER41A LTR ERV1 0 554 1 1097 159 70 23 chr6 170100830 170101009 -19178545 + MSTB LTR MaLR 234 426 0 6161 169 67 15 chr6 170101009 170102401 -19177153 + MSTB-int LTR MaLR 1 1580 0 367 130 0 0 chr6 170102401 170102455 -19177099 + MSTB LTR MaLR 1 54 -372 1323 54 0 0 chr6 170102460 170102628 -19176926 - L1P LINE L1 -943 5203 5036 1219 185 141 7 chr6 170102673 170102949 -19176605 + MSTA LTR MaLR 1 313 -115 2066 122 3 6 chr6 170102952 170103263 -19176291 - MER51B LTR ERV1 0 377 68 490 179 119 46 chr6 170103260 170103411 -19176143 - MER51B LTR ERV1 -215 162 1 * 484 48 48 0 chr6 170103413 170103476 -19176078 + MSTB LTR MaLR 313 378 -48 255 345 52 9 chr6 170103912 170104028 -19175526 + L2 LINE L2 2403 2523 -791 12424 99 4 5 chr6 170104045 170105841 -19173713 - L1PA7 LINE L1 -897 5249 3456 6797 64 6 1 chr6 170105846 170106738 -19172816 + L1PA7 LINE L1 5254 6149 -5 397 358 38 21 chr6 170106739 170106979 -19172575 + L2 LINE L2 2603 2846 -468 1749 232 96 81 chr6 170107121 170107482 -19172072 - L1MC5 LINE L1 -18 7943 7589 2097 126 3 0 chr6 170107482 170107783 -19171771 - AluSc SINE Alu -7 302 1 1749 232 96 81 chr6 170107783 170108607 -19170947 - L1MC5 LINE L1 -372 7589 6740 455 292 87 85 chr6 170108631 170109182 -19170372 - L1MC4a LINE L1 -1212 6596 6045 1502 261 101 18 chr6 170109260 170109658 -19169896 - L1MC4a LINE L1 -1878 5930 5474 1950 126 0 4 chr6 170109658 170109936 -19169618 - AluSx SINE Alu 0 312 36 1502 261 101 18 chr6 170109936 170110080 -19169474 - L1MC4a LINE L1 -2334 5474 5343 231 36 0 0 chr6 170110362 170110390 -19169164 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 709 245 0 18 chr6 170110399 170110562 -19168992 - AluJo SINE Alu -36 276 117 229 263 21 32 chr6 170110579 170110674 -19168880 - L1MC4a LINE L1 -1134 5012 4919 2575 86 3 3 chr6 170111749 170112100 -19167454 - L1PB2 LINE L1 0 6151 5801 23 35 7 0 chr6 170113421 170113499 -19166055 + AT_rich Low_complexity Low_complexity 1 37 0 201 275 235 20 chr6 170113593 170113742 -19165812 - MER5A DNA MER1_type -2 187 7 238 246 9 82 chr6 170115000 170115110 -19164444 - HAL1b LINE L1 -460 888 787 403 275 29 65 chr6 170115251 170115389 -19164165 + LTR16C LTR ERVL 176 308 -183 832 212 135 0 chr6 170116257 170116450 -19163104 - MER20 DNA MER1_type 0 219 1 2488 77 0 0 chr6 170117348 170117658 -19161896 + AluY SINE Alu 1 310 -1 2326 244 59 6 chr6 170117668 170118376 -19161178 + L1MB7 LINE L1 5428 6173 -11 1586 253 30 62 chr6 170118610 170119171 -19160383 + MER77 LTR ERV1 55 597 -8 23 0 0 0 chr6 170119706 170119729 -19159825 + AT_rich Low_complexity Low_complexity 1 23 0 2117 142 3 0 chr6 170119733 170120042 -19159512 + AluSx SINE Alu 3 312 0 2237 108 7 0 chr6 170121291 170121596 -19157958 + AluSx SINE Alu 6 312 0 241 138 17 17 chr6 170122263 170122321 -19157233 + GA-rich Low_complexity Low_complexity 1 58 0 14412 148 30 19 chr6 170122726 170123377 -19156177 + L1PA11 LINE L1 2861 3503 -2671 243 0 0 0 chr6 170123377 170123404 -19156150 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 14412 148 30 19 chr6 170123404 170126048 -19153506 + L1PA11 LINE L1 3503 6174 0 262 317 33 25 chr6 170126509 170126629 -19152925 - MIR SINE MIR -63 145 25 221 0 0 33 chr6 170126959 170126989 -19152565 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1589 99 5 5 chr6 170126991 170127203 -19152351 - AluSg/x SINE Alu -29 281 70 627 183 193 11 chr6 170128824 170128987 -19150567 - MLT2B1 LTR ERVL -43 477 233 590 134 10 0 chr6 170128985 170129082 -19150472 - MLT2B2 LTR ERVL -417 98 1 * 22 0 0 0 chr6 170129149 170129171 -19150383 + AT_rich Low_complexity Low_complexity 1 22 0 330 274 85 26 chr6 170129396 170129549 -19150005 - MIR3 SINE MIR -7 201 40 24 32 0 0 chr6 170130006 170130037 -19149517 + AT_rich Low_complexity Low_complexity 1 31 0 334 341 90 47 chr6 170130042 170130391 -19149163 - L1M4 LINE L1 -1031 5115 4736 6523 90 9 1 chr6 170130391 170131489 -19148065 + L1PA11 LINE L1 5069 6173 -1 334 341 90 47 chr6 170131489 170131652 -19147902 - L1M4 LINE L1 -1410 4736 4581 206 118 0 0 chr6 170131862 170131896 -19147658 + (TC)n Simple_repeat Simple_repeat 1 34 0 1668 199 27 6 chr6 170131907 170132238 -19147316 - MLT2C1 LTR ERVL -59 338 1 369 309 44 16 chr6 170132505 170132757 -19146797 - L1M4 LINE L1 -2097 4049 3791 260 0 0 0 chr6 170133458 170133487 -19146067 - LTR32 LTR ERVL -23 448 420 358 188 0 0 chr6 170133487 170133551 -19146003 + FAM SINE Alu 35 98 -77 1444 149 110 63 chr6 170133553 170133981 -19145573 - LTR7 LTR ERV1 -2 448 1 2433 90 48 13 chr6 170133981 170134358 -19145196 - HERVH LTR ERV1 0 7713 7324 1336 123 18 9 chr6 170134360 170134579 -19144975 - HERVH LTR ERV1 -1896 5817 5597 * 4130 141 21 8 chr6 170134576 170135229 -19144325 - HERVH LTR ERV1 -2564 5149 4488 3273 117 4 10 chr6 170135231 170135736 -19143818 - HERVH LTR ERV1 -3720 3993 3492 902 135 20 0 chr6 170135726 170135874 -19143680 - HERVH LTR ERV1 -4423 3290 3140 * 15044 79 5 6 chr6 170135868 170137939 -19141615 - HERVH LTR ERV1 -4726 2987 918 508 76 0 0 chr6 170137939 170138005 -19141549 - LTR7 LTR ERV1 -361 89 24 422 215 93 19 chr6 170138006 170138113 -19141441 + FAM SINE Alu 1 40 -9 2370 82 7 0 chr6 170138376 170138681 -19140873 + AluY SINE Alu 1 307 -4 21 36 0 0 chr6 170139238 170139266 -19140288 + AT_rich Low_complexity Low_complexity 1 28 0 306 215 139 0 chr6 170140320 170140399 -19139155 - L2 LINE L2 -5 3308 3219 22 0 0 0 chr6 170141412 170141434 -19138120 + AT_rich Low_complexity Low_complexity 1 22 0 262 292 144 51 chr6 170141539 170141775 -19137779 - MLT1K LTR MaLR 0 588 331 2304 155 3 10 chr6 170142370 170142810 -19136744 - Tigger2 DNA MER2_type 0 2718 1 3652 61 77 0 chr6 170143424 170143917 -19135637 + L1PA8 LINE L1 5638 6168 -4 411 275 123 7 chr6 170144373 170144511 -19135043 + MIR SINE MIR 91 244 -18 583 302 20 0 chr6 170144733 170144882 -19134672 + MIR3 SINE MIR 45 196 -12 272 241 0 0 chr6 170145618 170145676 -19133878 + MIR SINE MIR 78 135 -127 1811 118 0 0 chr6 170145898 170146160 -19133394 + AluSc SINE Alu 42 303 0 1023 106 0 0 chr6 170146161 170146312 -19133242 + (GA)n Simple_repeat Simple_repeat 1 151 0 237 65 0 0 chr6 170146433 170146464 -19133090 + (TCCCC)n Simple_repeat Simple_repeat 5 35 0 248 271 0 0 chr6 170146484 170146543 -19133011 + CT-rich Low_complexity Low_complexity 5 63 0 1970 159 0 3 chr6 170147007 170147302 -19132252 - AluSx SINE Alu -18 294 1 483 73 0 0 chr6 170147786 170147854 -19131700 + MLT2A1 LTR ERVL 1 68 -376 7700 70 32 0 chr6 170147858 170148888 -19130666 + HERVL-A1 LTR ERVL 2603 3665 -1989 7513 81 12 0 chr6 170148886 170149930 -19129624 + HERVL-A1 LTR ERVL 4598 5654 0 * 2646 83 33 10 chr6 170149932 170150312 -19129242 + MLT2A1 LTR ERVL 3 517 -37 553 47 12 12 chr6 170150312 170150398 -19129156 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 2646 83 33 10 chr6 170150398 170150414 -19129140 + MLT2A1 LTR ERVL 517 531 -23 2900 130 60 2 chr6 170150518 170151003 -19128551 - L1MA2 LINE L1 -9 7714 7202 322 195 23 0 chr6 170151004 170151091 -19128463 + (TA)n Simple_repeat Simple_repeat 1 89 0 3018 166 18 24 chr6 170151094 170151649 -19127905 - L1MA2 LINE L1 -512 7212 6655 2279 113 11 8 chr6 170151649 170152003 -19127551 - THE1A LTR MaLR 0 355 1 11195 101 18 3 chr6 170152005 170153560 -19125994 - THE1A-int LTR MaLR -2 1578 1 2093 111 8 66 chr6 170153560 170153937 -19125617 - THE1A LTR MaLR 0 355 1 3018 166 18 24 chr6 170153937 170154346 -19125208 - L1MA2 LINE L1 -1068 6656 6250 17495 174 55 15 chr6 170154348 170154794 -19124760 - L1MA2 LINE L1 -2440 5125 4698 3272 113 10 0 chr6 170154794 170155282 -19124272 - L1PA14 LINE L1 -1 6160 5668 17495 174 55 15 chr6 170155282 170155987 -19123567 - L1MA2 LINE L1 -2867 4698 4023 2585 53 0 3 chr6 170155987 170156291 -19123263 - AluY SINE Alu -8 303 1 17495 174 55 15 chr6 170156291 170159652 -19119902 - L1MA2 LINE L1 -3542 4023 386 2527 76 0 0 chr6 170159652 170159954 -19119600 + AluY SINE Alu 1 302 -9 17495 174 55 15 chr6 170159954 170160335 -19119219 - L1MA2 LINE L1 -7179 386 22 25 31 0 0 chr6 170160366 170160398 -19119156 + AT_rich Low_complexity Low_complexity 1 32 0 282 180 0 0 chr6 170160404 170160465 -19119089 + CT-rich Low_complexity Low_complexity 2 62 0 22 0 0 0 chr6 170160906 170160928 -19118626 + AT_rich Low_complexity Low_complexity 1 22 0 508 268 47 52 chr6 170162183 170162219 -19117335 - MIR SINE MIR -31 231 196 1642 171 162 57 chr6 170162219 170162676 -19116878 - MLT1D LTR MaLR 0 505 1 508 268 47 52 chr6 170162676 170162852 -19116702 - MIR SINE MIR -66 196 20 2680 245 101 55 chr6 170163686 170164895 -19114659 - Zaphod DNA AcHobo -2329 1702 416 2565 62 0 0 chr6 170164895 170165200 -19114354 + AluY SINE Alu 1 305 -6 2680 245 101 55 chr6 170165200 170165417 -19114137 - Zaphod DNA AcHobo -3615 416 210 182 357 95 0 chr6 170165548 170165716 -19113838 - L2 LINE L2 -8 3305 3122 428 323 19 39 chr6 170166196 170166242 -19113312 - MIR SINE MIR 0 262 217 1505 220 115 48 chr6 170166242 170166720 -19112834 - MER67D LTR ERV1 -4 510 1 428 323 19 39 chr6 170166720 170166930 -19112624 - MIR SINE MIR -45 217 11 572 293 22 22 chr6 170167565 170167794 -19111760 - L1MEd LINE L1 -5833 286 58 21 0 0 0 chr6 170168065 170168086 -19111468 + AT_rich Low_complexity Low_complexity 1 21 0 2056 170 7 29 chr6 170168707 170169118 -19110436 - MER57A LTR ERV1 0 403 2 611 221 0 14 chr6 170169122 170169262 -19110292 - MER57A-int LTR ERV1 -3 7534 7397 761 173 227 14 chr6 170169263 170169401 -19110153 - LTR54B LTR ERV1 -161 337 230 2556 62 0 0 chr6 170169401 170169707 -19109847 - AluY SINE Alu -5 306 1 761 173 227 14 chr6 170169707 170169846 -19109708 - LTR54B LTR ERV1 -268 230 1 5708 193 33 22 chr6 170169846 170171152 -19108402 - MER57A-int LTR ERV1 -393 7144 5825 3171 186 43 13 chr6 170171478 170171697 -19107857 - MER57A-int LTR ERV1 -1714 5823 5612 450 0 0 0 chr6 170171697 170171747 -19107807 + (CA)n Simple_repeat Simple_repeat 1 50 0 189 0 0 0 chr6 170171746 170171767 -19107787 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 3171 186 43 13 chr6 170171747 170172678 -19106876 - MER57A-int LTR ERV1 -1925 5612 4624 450 147 20 39 chr6 170172679 170172781 -19106773 - MER65A LTR ERV1 -1 444 345 541 122 20 20 chr6 170172785 170172883 -19106671 + MER4A LTR ERV1 1 98 -566 274 83 17 133 chr6 170172883 170172943 -19106611 + MER4A LTR ERV1 261 313 -351 14023 101 54 15 chr6 170172976 170175365 -19104189 + MER4A-int LTR ERV1 4116 6596 -2 594 135 21 0 chr6 170175372 170175468 -19104086 + MER4A LTR ERV1 1 98 -566 1857 131 3 22 chr6 170175468 170175820 -19103734 + MER4A LTR ERV1 261 664 0 1439 182 32 49 chr6 170175824 170176170 -19103384 - MER65A LTR ERV1 -105 340 1 828 219 25 108 chr6 170176176 170176593 -19102961 - LTR49-int LTR ERV1 -1350 3530 3162 1991 157 6 16 chr6 170176630 170176943 -19102611 - AluSx SINE Alu -2 310 1 613 196 61 51 chr6 170176946 170177469 -19102085 - LTR49-int LTR ERV1 -2617 3714 1707 432 218 0 10 chr6 170177589 170177690 -19101864 - LTR49-int LTR ERV1 -2884 3447 3348 392 244 12 0 chr6 170177737 170177823 -19101731 - LTR49-int LTR ERV1 -2981 3350 3264 835 101 69 79 chr6 170177876 170178065 -19101489 - LTR49-int LTR ERV1 -3059 3272 3086 25 65 0 0 chr6 170178527 170178573 -19100981 + AT_rich Low_complexity Low_complexity 1 46 0 414 305 56 59 chr6 170178573 170178911 -19100643 - L1ME LINE L1 -561 5601 5265 227 158 0 0 chr6 170178913 170178951 -19100603 - L1P4 LINE L1 -400 5766 5729 301 330 115 40 chr6 170179258 170179737 -19099817 - L1ME LINE L1 -1095 5051 4537 642 311 103 19 chr6 170179740 170180100 -19099454 + LTR33 LTR ERVL 1 390 -131 1495 185 54 81 chr6 170180335 170180779 -19098775 - MSTB1 LTR MaLR 0 432 1 417 268 36 0 chr6 170181329 170181441 -19098113 + L2 LINE L2 2042 2157 -1157 438 330 65 39 chr6 170181570 170181955 -19097599 + LTR16C LTR ERVL 97 491 0 441 287 44 0 chr6 170181955 170182091 -19097463 + L2 LINE L2 2182 2323 -991 2430 179 23 21 chr6 170182149 170182634 -19096920 + MER66B LTR ERV1 1 486 0 691 280 114 36 chr6 170183274 170183721 -19095833 - L1MC/D LINE L1 -1990 5818 5337 366 171 0 0 chr6 170183988 170184058 -19095496 + CT-rich Low_complexity Low_complexity 2 71 0 2122 121 13 22 chr6 170184084 170184399 -19095155 - AluSx SINE Alu 0 312 1 1639 175 18 18 chr6 170185525 170185810 -19093744 + AluJo SINE Alu 1 285 -27 974 176 33 125 chr6 170185840 170186169 -19093385 + LTR38B LTR ERV1 1 299 -311 2025 104 0 46 chr6 170186173 170186480 -19093074 - AluY SINE Alu -18 293 1 646 222 186 14 chr6 170186495 170186716 -19092838 - MER39 LTR ERV1 -199 508 250 436 234 89 16 chr6 170186683 170186807 -19092747 - MER39 LTR ERV1 -574 133 1 * 427 256 105 7 chr6 170186816 170187060 -19092494 + MLT1G LTR MaLR 197 555 -35 7988 154 41 26 chr6 170187067 170188321 -19091233 + Tigger1 DNA MER2_type 4 1287 -1131 2102 113 0 7 chr6 170188321 170188605 -19090949 - AluSx SINE Alu -30 282 1 7988 154 41 26 chr6 170188605 170188905 -19090649 + Tigger1 DNA MER2_type 1287 1581 -837 1358 139 171 17 chr6 170188898 170189185 -19090369 + Tigger1 DNA MER2_type 2076 2406 -12 * 534 262 60 30 chr6 170189237 170189405 -19090149 + L2 LINE L2 3141 3313 0 549 317 56 53 chr6 170189424 170189780 -19089774 - HAL1 LINE L1 -888 1619 1263 2123 119 41 0 chr6 170190429 170190722 -19088832 - AluSq SINE Alu -8 305 1 11659 75 21 13 chr6 170190727 170193655 -19085899 - L1PA7 LINE L1 -5 6149 3019 343 333 59 0 chr6 170195292 170195394 -19084160 - L2 LINE L2 -22 3250 3143 512 243 29 0 chr6 170195537 170195673 -19083881 + MER3 DNA MER1_type 1 140 -69 4668 140 14 25 chr6 170195679 170196528 -19083026 - L1MA4A LINE L1 0 6303 5464 11572 191 36 43 chr6 170196528 170199848 -19079706 - L1 LINE L1 -3290 3558 262 254 273 34 57 chr6 170200178 170200266 -19079288 - MIR SINE MIR -89 173 88 1438 159 52 49 chr6 170200908 170201117 -19078437 - MER44D DNA MER2_type -1882 609 402 2104 120 3 0 chr6 170201117 170201456 -19078098 + AluSq SINE Alu 1 340 0 1438 159 52 49 chr6 170201456 170201572 -19077982 - MER44D DNA MER2_type -2089 402 12 2035 167 31 67 chr6 170201778 170202256 -19077298 - LOR1b LTR ERV1 0 461 1 286 329 92 32 chr6 170202600 170202820 -19076734 + MIR SINE MIR 15 243 -19 25 75 0 0 chr6 170202914 170202967 -19076587 + AT_rich Low_complexity Low_complexity 1 53 0 26 0 0 0 chr6 170203101 170203127 -19076427 + AT_rich Low_complexity Low_complexity 1 26 0 6636 149 155 35 chr6 170203266 170204791 -19074763 + pTR5 LTR ERV1 724 2432 -6 2307 93 0 0 chr6 170204802 170205103 -19074451 - AluY SINE Alu -10 301 1 198 273 193 93 chr6 170205165 170205326 -19074228 + MIR SINE MIR 74 250 -12 2137 210 63 35 chr6 170205333 170205932 -19073622 - L1MB8 LINE L1 -1 6177 5562 323 59 78 0 chr6 170208983 170209034 -19070520 - MLT2A2 LTR ERVL 0 453 399 344 126 0 60 chr6 170209043 170209210 -19070344 + (TA)n Simple_repeat Simple_repeat 1 157 0 2729 109 25 0 chr6 170209215 170209618 -19069936 - MLT2A2 LTR ERVL -40 413 1 2866 7 0 0 chr6 170209702 170210011 -19069543 - AluYa5 SINE Alu -2 309 1 649 183 29 7 chr6 170210026 170210163 -19069391 - L1MC1 LINE L1 -5 6328 6189 2616 125 0 8 chr6 170210163 170210548 -19069006 + L1PA11 LINE L1 5782 6170 -4 3730 155 26 24 chr6 170210551 170211275 -19068279 - L1MC1 LINE L1 -126 6207 5482 403 310 40 40 chr6 170211543 170211769 -19067785 - L2 LINE L2 -4 3309 3084 185 369 0 0 chr6 170211824 170211889 -19067665 - L2 LINE L2 -216 3056 2992 395 334 15 56 chr6 170211960 170212298 -19067256 + LTR16A LTR ERVL 97 420 -30 727 328 96 53 chr6 170212337 170213284 -19066270 + HERV16 LTR ERVL 37 1024 -3972 280 319 83 32 chr6 170213389 170213546 -19066008 + HERV16 LTR ERVL 1168 1332 -3664 1427 322 50 28 chr6 170213824 170214579 -19064975 + HERV16 LTR ERVL 1735 2506 -2490 996 370 44 33 chr6 170214653 170216052 -19063502 + ERVL LTR ERVL 3892 5306 -458 421 344 70 4 chr6 170216386 170216616 -19062938 + LTR16A LTR ERVL 146 390 -60 * 845 246 25 56 chr6 170216612 170216896 -19062658 + MLT1B LTR MaLR 116 390 0 1907 117 8 4 chr6 170217433 170217699 -19061855 - AluSx SINE Alu -45 267 1 204 179 0 0 chr6 170217904 170217943 -19061611 + (CA)n Simple_repeat Simple_repeat 2 40 0 365 120 0 27 chr6 170218948 170219023 -19060531 + (TCTCC)n Simple_repeat Simple_repeat 4 76 0 1991 136 0 57 chr6 170219023 170219354 -19060200 - AluSx SINE Alu 0 312 1 180 0 0 0 chr6 170219776 170219796 -19059758 + (T)n Simple_repeat Simple_repeat 1 20 0 1971 101 4 14 chr6 170221156 170221433 -19058121 + AluSq SINE Alu 1 274 -39 283 304 26 77 chr6 170221656 170221850 -19057704 - MIR SINE MIR -9 253 70 2296 95 3 0 chr6 170222676 170222980 -19056574 - AluSc SINE Alu -4 305 1 232 360 58 16 chr6 170223231 170223420 -19056134 + L2 LINE L2 2140 2336 -978 23 0 0 0 chr6 170224566 170224589 -19054965 + AT_rich Low_complexity Low_complexity 1 23 0 408 128 8 160 chr6 170224589 170224653 -19054901 - L1MB7 LINE L1 -67 6117 6079 2166 98 0 0 chr6 170224653 170224929 -19054625 - AluSx SINE Alu -18 294 19 408 128 8 160 chr6 170224929 170224989 -19054565 - L1MB7 LINE L1 -105 6079 6012 234 253 32 53 chr6 170226010 170226105 -19053449 + L3 LINE CR1 1273 1365 -212 266 304 10 0 chr6 170226517 170226619 -19052935 + MLT1L LTR MaLR 140 242 -373 259 283 38 9 chr6 170226769 170226875 -19052679 + MLT1L LTR MaLR 422 530 -85 338 154 13 0 chr6 170226880 170226958 -19052596 + GA-rich Low_complexity Low_complexity 1 79 0 21 0 0 0 chr6 170227062 170227083 -19052471 + AT_rich Low_complexity Low_complexity 1 21 0 546 256 0 0 chr6 170227758 170227938 -19051616 + (TG)n Simple_repeat Simple_repeat 1 180 0 564 258 0 0 chr6 170227980 170228158 -19051396 + (TG)n Simple_repeat Simple_repeat 1 178 0 527 260 158 21 chr6 170228689 170228974 -19050580 - LTR50 LTR ERVL -1 794 471 427 261 168 15 chr6 170229104 170229307 -19050247 - LTR50 LTR ERVL -561 234 1 22 70 0 0 chr6 170229744 170229787 -19049767 + AT_rich Low_complexity Low_complexity 1 43 0 1873 181 11 14 chr6 170230273 170230622 -19048932 + MER7A DNA MER2_type 1 346 0 873 237 83 26 chr6 170231334 170231562 -19047992 - MIR SINE MIR -21 241 1 380 286 0 9 chr6 170231651 170231756 -19047798 - MIR SINE MIR -101 161 58 305 299 21 31 chr6 170231776 170231873 -19047681 + MER5A DNA MER1_type 94 189 0 243 346 58 85 chr6 170231970 170232450 -19047104 - L2 LINE L2 0 3272 2806 2002 251 47 10 chr6 170232814 170233324 -19046230 - MLT1F LTR MaLR 0 542 14 21 36 0 0 chr6 170234180 170234208 -19045346 + AT_rich Low_complexity Low_complexity 1 28 0 1628 189 0 21 chr6 170234208 170234499 -19045055 - AluJb SINE Alu -27 285 1 240 298 0 29 chr6 170234533 170234637 -19044917 - L1MC/D LINE L1 -2015 5793 5693 2147 115 0 0 chr6 170234707 170234986 -19044568 - AluSg SINE Alu -31 279 1 430 307 47 13 chr6 170235673 170235973 -19043581 + L1ME4a LINE L1 5608 5917 -204 28 48 0 0 chr6 170236556 170236598 -19042956 + AT_rich Low_complexity Low_complexity 1 42 0 255 269 119 0 chr6 170236708 170236775 -19042779 + MER45 DNA AcHobo 1 75 -1506 1420 103 71 36 chr6 170236785 170237038 -19042516 + THE1B LTR MaLR 1 262 -102 3572 165 5 1 chr6 170237038 170237699 -19041855 - L1P LINE L1 -1593 4553 3891 * 5771 125 28 8 chr6 170237695 170238558 -19040996 + L1PA12 LINE L1 4746 5638 -530 4655 66 1 157 chr6 170238558 170239373 -19040181 - LTR12 LTR ERV1 0 688 1 5771 125 28 8 chr6 170239373 170239914 -19039640 + L1PA12 LINE L1 5638 6167 -1 400 167 21 10 chr6 170240246 170240342 -19039212 + GA-rich Low_complexity Low_complexity 4 100 0 342 314 177 8 chr6 170241916 170242040 -19037514 - L2 LINE L2 -1 3271 3127 2546 44 0 19 chr6 170242883 170243200 -19036354 - AluY SINE Alu 0 311 1 213 65 0 0 chr6 170243876 170243907 -19035647 + (TG)n Simple_repeat Simple_repeat 2 32 0 306 331 30 30 chr6 170244520 170244686 -19034868 + MIR SINE MIR 50 215 -47 2126 209 71 59 chr6 170244937 170245483 -19034071 + MLT2B3 LTR ERVL 1 553 -1 631 188 54 0 chr6 170245509 170245547 -19034007 - MLT2B3 LTR ERVL 0 554 519 252 0 0 0 chr6 170245547 170245575 -19033979 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 631 188 54 0 chr6 170245575 170245648 -19033906 - MLT2B3 LTR ERVL -35 519 437 12270 181 83 7 chr6 170245649 170247982 -19031572 - L1M1 LINE L1 -5044 2521 13 349 254 0 9 chr6 170248262 170248368 -19031186 - L1MC4 LINE L1 -1339 6983 1995 2535 61 3 0 chr6 170298912 170299222 -18980332 + AluY SINE Alu 1 311 0 1769 159 32 23 chr6 170299394 170299703 -18979851 - AluJb SINE Alu 0 312 1 211 254 0 28 chr6 170301467 170301538 -18978016 + A-rich Low_complexity Low_complexity 5 73 0 2511 61 3 0 chr6 170301616 170301926 -18977628 + AluY SINE Alu 1 311 0 324 64 0 0 chr6 170303346 170303393 -18976161 + (CA)n Simple_repeat Simple_repeat 1 47 0 2251 102 0 3 chr6 170304606 170304899 -18974655 - AluSc SINE Alu -17 292 1 413 276 132 42 chr6 170304908 170305241 -18974313 - MLT1J1 LTR MaLR -77 369 7 23 0 0 0 chr6 170305351 170305374 -18974180 + AT_rich Low_complexity Low_complexity 1 23 0 2257 89 4 0 chr6 170305692 170306013 -18973541 + AluSp SINE Alu 2 323 0 2336 99 0 0 chr6 170306796 170307090 -18972464 - AluSg SINE Alu -16 294 1 24 0 0 0 chr6 170307136 170307160 -18972394 + AT_rich Low_complexity Low_complexity 1 24 0 1640 128 75 4 chr6 170307383 170307648 -18971906 - AluJo SINE Alu -28 284 1 297 374 29 7 chr6 170307661 170307800 -18971754 - L2 LINE L2 -541 2773 2632 239 274 32 27 chr6 170309419 170309605 -18969949 - AluSg SINE Alu -113 187 1 346 370 59 18 chr6 170309674 170310012 -18969542 + L2 LINE L2 2006 2357 -957 316 285 23 23 chr6 170310109 170310239 -18969315 + CT-rich Low_complexity Low_complexity 4 133 0 557 247 37 17 chr6 170310377 170310550 -18969004 + MIR SINE MIR 56 231 -31 638 228 26 0 chr6 170310616 170310730 -18968824 - FLAM_C SINE Alu -16 117 1 396 266 124 0 chr6 170311083 170311196 -18968358 - MER63 DNA MER1_type -83 753 1 355 286 74 40 chr6 170313203 170313378 -18966176 - MIR SINE MIR -77 185 5 288 0 0 0 chr6 170313660 170313692 -18965862 + (CA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr6 170313706 170313727 -18965827 + AT_rich Low_complexity Low_complexity 1 21 0 311 287 80 58 chr6 170313805 170313993 -18965561 + L3b LINE CR1 1258 1449 -134 1717 132 22 0 chr6 170316357 170316629 -18962925 + AluSg SINE Alu 31 308 -2 347 313 34 7 chr6 170316635 170316782 -18962772 - L2 LINE L2 -1404 1910 1760 791 197 0 0 chr6 170317133 170317265 -18962289 - FLAM_C SINE Alu -1 132 1 692 298 68 20 chr6 170317342 170317695 -18961859 - L1ME3A LINE L1 -295 5858 5489 410 304 172 30 chr6 170317765 170318156 -18961398 - L1ME3A LINE L1 -2982 3147 2688 1888 145 65 57 chr6 170318156 170318528 -18961026 - THE1C LTR MaLR 0 375 1 410 304 172 30 chr6 170318528 170318567 -18960987 - L1ME3A LINE L1 -3441 2688 2656 269 240 13 78 chr6 170318626 170318780 -18960774 - L1ME3A LINE L1 -3857 2272 2129 257 333 115 21 chr6 170319164 170319452 -18960102 - HAL1 LINE L1 -825 1682 1368 334 293 107 41 chr6 170319492 170319782 -18959772 - L1ME3A LINE L1 -4904 1215 907 1843 188 13 43 chr6 170319984 170320356 -18959198 - MLT1A1 LTR MaLR 0 365 5 372 161 0 0 chr6 170320439 170320491 -18959063 + CT-rich Low_complexity Low_complexity 2 56 -38 186 43 0 0 chr6 170320491 170320514 -18959040 + (TG)n Simple_repeat Simple_repeat 2 24 0 372 161 0 0 chr6 170320514 170320554 -18959000 + CT-rich Low_complexity Low_complexity 55 94 0 1225 144 0 44 chr6 170320866 170321095 -18958459 + Tigger5 DNA MER2_type 2105 2323 0 1765 166 3 34 chr6 170321650 170321683 -18957871 - AluJb SINE Alu 0 312 279 207 0 0 0 chr6 170321683 170321706 -18957848 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1765 166 3 34 chr6 170321706 170321992 -18957562 - AluJb SINE Alu -33 279 3 349 343 114 0 chr6 170321996 170322162 -18957392 + L2 LINE L2 2887 3071 -201 537 239 44 25 chr6 170322248 170322407 -18957147 - MIR SINE MIR -99 163 2 215 235 0 20 chr6 170322860 170322911 -18956643 + L2 LINE L2 3249 3298 -15 2035 139 0 16 chr6 170323463 170323780 -18955774 - AluSx SINE Alu 0 312 1 646 176 124 7 chr6 170323783 170323936 -18955618 - AluSg/x SINE Alu -5 307 137 5406 149 14 43 chr6 170323972 170324229 -18955325 - L1MA8 LINE L1 -5 6286 6023 2341 86 0 3 chr6 170324229 170324520 -18955034 + AluSg SINE Alu 1 290 -20 5406 149 14 43 chr6 170324520 170325275 -18954279 - L1MA8 LINE L1 -268 6023 5304 315 321 226 9 chr6 170325350 170325677 -18953877 - L2 LINE L2 -1005 2309 1912 4807 138 60 44 chr6 170325719 170326654 -18952900 - L1MA7 LINE L1 -1 6290 5341 2374 101 0 0 chr6 170326811 170327119 -18952435 + AluSx SINE Alu 1 308 -4 1401 183 0 43 chr6 170328447 170328726 -18950828 + AluJb SINE Alu 1 267 -45 242 277 0 18 chr6 170329151 170329375 -18950179 + C-rich Low_complexity Low_complexity 1 219 0 2288 109 0 13 chr6 170330405 170330716 -18948838 + AluSx SINE Alu 1 307 -5 292 188 12 35 chr6 170330727 170330812 -18948742 + A-rich Low_complexity Low_complexity 5 87 0 304 295 141 13 chr6 170331024 170331173 -18948381 - MIR SINE MIR -74 188 21 926 272 104 27 chr6 170333108 170333338 -18946216 + L1ME3 LINE L1 4028 4239 -1907 1614 169 13 36 chr6 170333338 170333646 -18945908 + AluJb SINE Alu 1 301 -11 926 272 104 27 chr6 170333646 170333904 -18945650 + L1ME3 LINE L1 4239 4554 -1592 460 286 39 16 chr6 170333953 170334135 -18945419 - L1M4 LINE L1 -1075 5071 4886 699 267 50 79 chr6 170334151 170334786 -18944768 + L1ME3 LINE L1 5122 5737 -433 812 182 0 0 chr6 170334789 170334910 -18944644 + AluJb SINE Alu 2 122 -190 674 186 80 160 chr6 170334925 170335399 -18944155 + L1ME3 LINE L1 5725 6160 -2 1402 189 33 62 chr6 170335422 170335562 -18943992 + AluJo SINE Alu 1 144 -168 1989 123 3 45 chr6 170335562 170335871 -18943683 + AluSx SINE Alu 1 296 -16 1402 189 33 62 chr6 170335871 170336037 -18943517 + AluJo SINE Alu 144 298 -14 562 291 80 51 chr6 170336044 170336083 -18943471 - L2 LINE L2 -527 2787 2751 1919 120 7 34 chr6 170336083 170336224 -18943330 + AluSx SINE Alu 1 144 -172 2164 120 0 3 chr6 170336224 170336524 -18943030 + AluSq SINE Alu 1 299 -14 1919 120 7 34 chr6 170336524 170336706 -18942848 + AluSx SINE Alu 144 316 0 562 291 80 51 chr6 170336706 170336902 -18942652 - L2 LINE L2 -563 2751 2544 2223 77 7 17 chr6 170336904 170337201 -18942353 + AluY SINE Alu 1 294 -17 454 323 52 36 chr6 170337209 170337460 -18942094 + MLT1K LTR MaLR 172 426 -162 2182 77 18 7 chr6 170337528 170337813 -18941741 + AluSq SINE Alu 16 303 -10 2162 97 7 7 chr6 170337816 170338105 -18941449 + AluY SINE Alu 1 289 -22 535 250 157 9 chr6 170338150 170338366 -18941188 + HAL1 LINE L1 1401 1648 -859 1866 119 4 4 chr6 170338911 170339164 -18940390 - AluSx SINE Alu -59 253 1 2327 92 0 0 chr6 170339777 170340069 -18939485 - AluSg SINE Alu -18 292 1 1797 163 10 10 chr6 170340595 170340884 -18938670 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr6 170340884 170340912 -18938642 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr6 170341051 170341077 -18938477 + (TA)n Simple_repeat Simple_repeat 1 26 0 26 82 0 0 chr6 170341600 170341661 -18937893 + AT_rich Low_complexity Low_complexity 1 61 0 341 296 118 35 chr6 170341787 170341956 -18937598 + L1ME LINE L1 5352 5534 -587 3665 180 82 31 chr6 170341967 170342891 -18936663 - MER52C LTR ERV1 0 1278 128 485 306 157 56 chr6 170342952 170343639 -18935915 + L2 LINE L2 2560 3313 0 233 57 29 0 chr6 170343954 170343989 -18935565 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 708 214 0 0 chr6 170344008 170344125 -18935429 - FLAM_C SINE Alu -25 118 2 2486 237 69 29 chr6 170344326 170345184 -18934370 + Charlie2a DNA MER1_type 1542 2441 -421 1831 171 10 7 chr6 170345184 170345494 -18934060 + AluSx SINE Alu 1 311 -1 2486 237 69 29 chr6 170345494 170345559 -18933995 + Charlie2a DNA MER1_type 2441 2502 -360 1411 166 59 52 chr6 170345569 170345858 -18933696 + AluJo SINE Alu 6 296 -16 588 270 104 3 chr6 170345861 170346179 -18933375 + Charlie2a DNA MER1_type 2503 2852 -10 1833 180 0 10 chr6 170346189 170346484 -18933070 + AluJo SINE Alu 1 292 -20 480 287 113 10 chr6 170346520 170346715 -18932839 + MIR SINE MIR 46 260 -2 2060 147 0 13 chr6 170347356 170347668 -18931886 - AluJo SINE Alu -2 310 3 2294 104 13 7 chr6 170348508 170348806 -18930748 - AluSx SINE Alu -12 300 1 280 297 153 18 chr6 170348828 170348939 -18930615 + L2 LINE L2 3134 3259 -13 1645 128 7 105 chr6 170349476 170349781 -18929773 - AluSx SINE Alu -37 275 1 948 134 52 6 chr6 170349861 170350033 -18929521 + Tigger1 DNA MER2_type 2238 2417 -1 2327 156 54 17 chr6 170350035 170350516 -18929038 + L1MA8 LINE L1 5787 6285 -6 2259 231 125 19 chr6 170350541 170350891 -18928663 + L1ME2 LINE L1 4910 5222 -942 2416 91 0 3 chr6 170350891 170351198 -18928356 + AluSg SINE Alu 1 306 -4 2259 231 125 19 chr6 170351198 170351950 -18927604 + L1ME2 LINE L1 5222 6139 -25 1047 162 23 0 chr6 170352190 170352363 -18927191 + AluJb SINE Alu 134 310 -2 313 270 0 27 chr6 170354335 170354347 -18925207 + (TA)n Simple_repeat Simple_repeat 1 12 -96 772 180 0 0 chr6 170354347 170354469 -18925085 + FLAM_A SINE Alu 1 122 -11 313 270 0 27 chr6 170354469 170354554 -18925000 + (TA)n Simple_repeat Simple_repeat 12 97 -11 1999 148 7 0 chr6 170354554 170354852 -18924702 - AluJo SINE Alu -12 300 1 313 270 0 27 chr6 170354852 170354864 -18924690 + (TA)n Simple_repeat Simple_repeat 97 108 0 2259 122 0 6 chr6 170355117 170355428 -18924126 + AluSx SINE Alu 1 309 -3 829 234 79 55 chr6 170355438 170355856 -18923698 + L1M4 LINE L1 3585 4012 -2134 860 163 0 0 chr6 170355856 170355991 -18923563 + AluJb SINE Alu 1 135 -177 288 0 0 0 chr6 170355995 170356027 -18923527 + (CA)n Simple_repeat Simple_repeat 2 33 0 382 241 44 22 chr6 170356027 170356164 -18923390 + L1M4 LINE L1 4064 4203 -1943 2105 129 0 3 chr6 170356179 170356473 -18923081 + AluSg SINE Alu 1 293 -17 386 261 80 43 chr6 170356481 170356669 -18922885 + L1MC5 LINE L1 7481 7675 -286 435 266 87 84 chr6 170356691 170356977 -18922577 + LTR16C LTR ERVL 4 290 -201 719 87 6 143 chr6 170357356 170357442 -18922112 + MLT1B LTR MaLR 2 58 -332 2365 98 19 32 chr6 170357442 170357811 -18921743 - THE1B LTR MaLR 0 364 1 719 87 6 143 chr6 170357811 170357885 -18921669 + MLT1B LTR MaLR 58 140 -250 570 164 33 0 chr6 170357884 170358006 -18921548 + MLT1B LTR MaLR 265 390 0 * 244 267 13 13 chr6 170358120 170358195 -18921359 + MIR SINE MIR 61 135 -127 847 124 7 29 chr6 170358409 170358546 -18921008 + AluJo SINE Alu 1 134 -178 205 226 19 0 chr6 170358546 170358599 -18920955 + A-rich Low_complexity Low_complexity 2 55 0 1659 181 76 32 chr6 170358836 170359367 -18920187 - MLT2A2 LTR ERVL 0 554 1 2515 83 0 3 chr6 170359800 170360114 -18919440 - AluSp SINE Alu 0 313 1 193 333 30 15 chr6 170360413 170360479 -18919075 - L2 LINE L2 -18 3254 3188 40 21 0 0 chr6 170360670 170360717 -18918837 + AT_rich Low_complexity Low_complexity 1 47 0 1457 191 28 11 chr6 170360717 170360999 -18918555 - AluJo SINE Alu -23 289 3 1713 180 20 7 chr6 170361011 170361306 -18918248 - AluJb SINE Alu -13 299 1 2402 84 7 0 chr6 170361556 170361853 -18917701 + AluSg SINE Alu 1 299 -11 400 262 70 77 chr6 170362036 170362171 -18917383 - MIR SINE MIR -3 259 122 1812 179 0 10 chr6 170362171 170362478 -18917076 + AluJb SINE Alu 1 304 -8 400 262 70 77 chr6 170362478 170362566 -18916988 - MIR SINE MIR -140 122 35 22 35 0 0 chr6 170363060 170363089 -18916465 + AT_rich Low_complexity Low_complexity 1 29 0 1596 188 7 13 chr6 170364315 170364613 -18914941 - AluJo SINE Alu -13 299 4 213 209 0 0 chr6 170365125 170365168 -18914386 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 2719 92 75 12 chr6 170365176 170365590 -18913964 - L1PA10 LINE L1 0 6168 5729 2242 102 7 0 chr6 170365970 170366265 -18913289 - AluSq SINE Alu -16 297 1 336 204 138 41 chr6 170367176 170367372 -18912182 + L1ME4a LINE L1 5885 6099 -22 573 115 0 0 chr6 170367681 170367768 -18911786 + (TG)n Simple_repeat Simple_repeat 1 87 0 325 239 26 51 chr6 170368288 170368405 -18911149 + MIR SINE MIR 147 260 -2 2242 96 0 0 chr6 170368408 170368700 -18910854 - AluY SINE Alu -19 292 1 675 184 0 75 chr6 170368719 170368791 -18910763 - AluJo SINE Alu -176 136 79 1754 196 15 9 chr6 170368791 170369132 -18910422 - MER61A LTR ERV1 0 343 1 675 184 0 75 chr6 170369132 170369206 -18910348 - AluJo SINE Alu -233 79 1 183 303 13 13 chr6 170371138 170371214 -18908340 + MIR SINE MIR 137 212 -50 713 228 149 66 chr6 170371351 170371633 -18907921 + L1MC4 LINE L1 7454 7711 -331 2441 63 3 0 chr6 170371633 170371935 -18907619 + AluY SINE Alu 1 303 -8 713 228 149 66 chr6 170371935 170372196 -18907358 + L1MC4 LINE L1 7711 8042 0 21 36 0 0 chr6 170372324 170372352 -18907202 + AT_rich Low_complexity Low_complexity 1 28 0 2347 87 0 13 chr6 170372426 170372724 -18906830 + AluSg SINE Alu 1 294 -16 3794 146 25 21 chr6 170372985 170373706 -18905848 - MER50 LTR ERV1 -10 724 1 195 184 0 0 chr6 170373815 170373853 -18905701 + T-rich Low_complexity Low_complexity 1 38 0 198 0 0 0 chr6 170374123 170374145 -18905409 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 36 40 0 0 chr6 170374302 170374352 -18905202 + AT_rich Low_complexity Low_complexity 1 50 0 1598 184 64 3 chr6 170374554 170374836 -18904718 - AluJb SINE Alu -13 299 1 2297 87 0 3 chr6 170374926 170375236 -18904318 - AluSc SINE Alu 0 309 1 187 343 200 0 chr6 170375867 170375972 -18903582 + L3 LINE CR1 1429 1554 -23 996 249 27 31 chr6 170375983 170376240 -18903314 + MIR SINE MIR 6 261 -1 1510 109 105 208 chr6 170376242 170376429 -18903125 - MSTA LTR MaLR 0 428 223 294 29 0 0 chr6 170376429 170376464 -18903090 + (GA)n Simple_repeat Simple_repeat 2 36 0 1510 109 105 208 chr6 170376464 170376753 -18902801 - MSTA LTR MaLR -205 223 1 1143 42 7 0 chr6 170377250 170377392 -18902162 - L1PA8 LINE L1 -8 6164 6022 2240 113 0 3 chr6 170377725 170378025 -18901529 - AluSx SINE Alu -13 299 1 183 355 0 0 chr6 170378126 170378188 -18901366 + L2 LINE L2 3201 3262 -10 535 292 92 10 chr6 170378501 170378696 -18900858 - MIR SINE MIR -32 230 20 2552 67 0 0 chr6 170379375 170379674 -18899880 - AluSc SINE Alu -10 299 1 190 364 66 8 chr6 170380291 170380412 -18899142 + L2 LINE L2 3182 3309 -4 200 173 19 19 chr6 170380415 170380467 -18899087 + (TTAA)n Simple_repeat Simple_repeat 1 52 0 2094 124 7 0 chr6 170380628 170380918 -18898636 + AluSx SINE Alu 1 292 -20 948 137 0 20 chr6 170381784 170381930 -18897624 + FLAM_C SINE Alu 1 143 0 2070 129 0 32 chr6 170382068 170382379 -18897175 + AluSp SINE Alu 4 304 -9 315 344 38 6 chr6 170382450 170382610 -18896944 - L1ME4a LINE L1 -195 5926 5762 270 241 0 0 chr6 170382765 170382852 -18896702 + (TA)n Simple_repeat Simple_repeat 1 87 0 3870 168 34 19 chr6 170384077 170384911 -18894643 - L1MB3 LINE L1 -30 6153 5308 2368 79 3 3 chr6 170385079 170385382 -18894172 - AluSq SINE Alu -10 303 1 1001 257 42 80 chr6 170386147 170386423 -18893131 - LTR16C LTR ERVL -2 489 235 1470 199 57 4 chr6 170386423 170386704 -18892850 - AluJo SINE Alu -16 296 1 1001 257 42 80 chr6 170386704 170386875 -18892679 - LTR16C LTR ERVL -256 235 59 1998 129 0 4 chr6 170387395 170387673 -18891881 + AluSx SINE Alu 34 310 -2 207 200 0 0 chr6 170388221 170388261 -18891293 + MIR SINE MIR 223 262 0 964 255 177 23 chr6 170388702 170389358 -18890196 - L1MC4a LINE L1 -1547 6261 5505 240 289 67 0 chr6 170389813 170389917 -18889637 - HsTC2 DNA Tc2 -69 1829 1 2054 263 40 12 chr6 170390222 170390976 -18888578 - L1MB7 LINE L1 0 6184 5576 622 327 83 21 chr6 170391441 170391768 -18887786 - L3 LINE CR1 -119 1458 1112 312 27 0 0 chr6 170391967 170392004 -18887550 + (CA)n Simple_repeat Simple_repeat 2 38 0 2122 148 0 0 chr6 170393778 170394083 -18885471 + AluSx SINE Alu 1 305 -7 1914 130 46 30 chr6 170394213 170394582 -18884972 + THE1C LTR MaLR 1 375 0 2278 118 0 0 chr6 170394952 170395257 -18884297 + AluSx SINE Alu 1 305 -7 271 331 23 15 chr6 170396553 170396683 -18882871 + L2 LINE L2 2966 3096 -176 379 197 0 0 chr6 170396730 170396801 -18882753 + Tigger2 DNA MER2_type 1 71 -2647 766 212 17 39 chr6 170396838 170397017 -18882537 - MER8 DNA MER2_type -64 175 1 207 108 27 0 chr6 170397695 170397732 -18881822 + A-rich Low_complexity Low_complexity 3 40 0 203 226 16 65 chr6 170397886 170397948 -18881606 + MIR SINE MIR 41 99 -109 189 364 0 0 chr6 170397954 170398020 -18881534 + MIR SINE MIR 46 111 -97 * 484 305 119 44 chr6 170398018 170398613 -18880941 + L2 LINE L2 2615 3249 -64 2233 126 0 0 chr6 170398652 170398945 -18880609 + AluSq SINE Alu 1 293 -20 23 33 0 0 chr6 170398966 170398996 -18880558 + AT_rich Low_complexity Low_complexity 1 30 0 248 224 60 43 chr6 170399257 170399373 -18880181 + LTR16A1 LTR ERVL 26 143 -314 272 354 62 38 chr6 170399982 170400515 -18879039 - L2 LINE L2 -181 3091 2550 562 111 11 11 chr6 170400908 170400998 -18878556 - AluJb SINE Alu -179 133 44 1024 272 140 30 chr6 170401203 170401975 -18877579 + L2 LINE L2 2460 3313 0 1656 198 24 0 chr6 170402707 170403000 -18876554 + AluJb SINE Alu 1 300 -12 231 152 0 0 chr6 170403742 170403788 -18875766 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 2375 82 23 0 chr6 170404473 170404777 -18874777 + AluY SINE Alu 1 311 0 355 284 90 15 chr6 170404777 170404911 -18874643 + MIR SINE MIR 24 167 -95 429 143 13 0 chr6 170405076 170405153 -18874401 + MADE1 DNA Mariner 2 79 -1 261 217 52 70 chr6 170405244 170405359 -18874195 + L1MB5 LINE L1 5318 5430 -734 244 240 67 13 chr6 170405364 170405439 -18874115 + MIR SINE MIR 159 237 -25 2127 97 19 19 chr6 170408667 170408978 -18870576 + AluSq SINE Alu 2 312 -1 387 277 100 43 chr6 170409141 170409581 -18869973 + L1MC/D LINE L1 5313 5777 -2031 2381 92 0 0 chr6 170409927 170410220 -18869334 + AluSg SINE Alu 1 293 -17 396 0 0 0 chr6 170413325 170413369 -18866185 + (TG)n Simple_repeat Simple_repeat 2 45 0 261 333 29 0 chr6 170413490 170413595 -18865959 + L2 LINE L2 3198 3305 -8 1782 113 71 4 chr6 170413715 170414003 -18865551 + AluSx SINE Alu 1 306 0 2471 74 0 3 chr6 170414931 170415243 -18864311 + AluY SINE Alu 1 311 0 219 272 122 39 chr6 170415849 170416029 -18863525 + MIR3 SINE MIR 2 196 -12 1884 171 0 10 chr6 170417764 170418074 -18861480 + AluSx SINE Alu 1 307 -5 987 193 61 5 chr6 170418379 170418591 -18860963 - MER46A DNA MER2_type 0 236 13 2554 179 27 8 chr6 170418591 170419110 -18860444 + L1MB5 LINE L1 5646 6174 0 673 340 62 59 chr6 170419330 170420294 -18859260 + L2 LINE L2 1907 2873 -441 2362 87 0 28 chr6 170420340 170420661 -18858893 + AluSx SINE Alu 1 312 0 29 37 0 19 chr6 170420832 170420862 -18858692 + AT_rich Low_complexity Low_complexity 1 31 -22 1901 159 7 0 chr6 170420862 170421151 -18858403 + AluJb SINE Alu 1 291 -21 29 37 0 19 chr6 170421151 170421174 -18858380 + AT_rich Low_complexity Low_complexity 31 53 0 195 129 0 0 chr6 170421475 170421506 -18858048 + (TCC)n Simple_repeat Simple_repeat 1 31 0 846 133 0 30 chr6 170421610 170421745 -18857809 + AluJo SINE Alu 2 132 -170 844 194 0 12 chr6 170422163 170422333 -18857221 + AluJo SINE Alu 134 301 -11 463 295 96 78 chr6 170422374 170422696 -18856858 + L2 LINE L2 2945 3272 0 3054 126 11 6 chr6 170423080 170423627 -18855927 + L1 LINE L1 2184 2733 -4832 2079 134 6 17 chr6 170423727 170424085 -18855469 + L1MA2 LINE L1 5440 5793 -511 325 188 24 0 chr6 170424088 170424173 -18855381 + (TA)n Simple_repeat Simple_repeat 2 88 0 2900 130 60 2 chr6 170424174 170424659 -18854895 + L1MA2 LINE L1 5783 6295 -9 2646 83 33 10 chr6 170424763 170424779 -18854775 - MLT2A1 LTR ERVL -23 531 517 553 47 12 12 chr6 170424779 170424865 -18854689 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 2646 83 33 10 chr6 170424865 170425245 -18854309 - MLT2A1 LTR ERVL -37 517 3 6616 170 11 3 chr6 170425247 170426295 -18853259 - HERVL-A1 LTR ERVL 0 5654 4598 * 7700 70 32 0 chr6 170426293 170427323 -18852231 - HERVL-A1 LTR ERVL -1989 3665 2603 483 73 0 0 chr6 170427327 170427395 -18852159 - MLT2A1 LTR ERVL -376 68 1 6066 175 29 23 chr6 170427886 170429056 -18850498 + L1 LINE L1 2776 3937 -3628 2596 49 0 3 chr6 170429056 170429360 -18850194 + AluY SINE Alu 1 303 -8 6066 175 29 23 chr6 170429360 170430065 -18849489 + L1 LINE L1 3937 4683 -2882 3272 113 10 0 chr6 170430065 170430553 -18849001 + L1PA14 LINE L1 5668 6160 -1 6066 175 29 23 chr6 170430553 170430999 -18848555 + L1 LINE L1 4683 5125 -2440 1458 216 15 15 chr6 170431001 170431408 -18848146 + L1 LINE L1 6250 6656 -909 2093 111 8 66 chr6 170431410 170431787 -18847767 + THE1A LTR MaLR 1 355 0 11128 103 18 3 chr6 170431787 170433342 -18846212 + THE1A-int LTR MaLR 1 1578 -2 529 128 11 21 chr6 170433344 170433438 -18846116 + THE1A LTR MaLR 1 93 -271 1270 87 6 0 chr6 170433547 170433708 -18845846 - AluSc SINE Alu -106 203 42 272 241 0 0 chr6 170433930 170433988 -18845566 - MIR SINE MIR -127 135 78 583 302 20 0 chr6 170434724 170434873 -18844681 - MIR3 SINE MIR -12 196 45 411 275 123 7 chr6 170435095 170435233 -18844321 - MIR SINE MIR -18 244 91 3652 61 77 0 chr6 170435689 170436182 -18843372 - L1PA8 LINE L1 -4 6168 5638 2304 155 3 10 chr6 170436796 170437236 -18842318 + Tigger2 DNA MER2_type 1 2718 0 22 0 0 0 chr6 170438172 170438194 -18841360 + AT_rich Low_complexity Low_complexity 1 22 0 309 215 139 0 chr6 170439207 170439286 -18840268 + L2 LINE L2 3219 3308 -5 21 36 0 0 chr6 170440340 170440368 -18839186 + AT_rich Low_complexity Low_complexity 1 28 0 2372 85 7 0 chr6 170440925 170441230 -18838324 - AluY SINE Alu -4 307 1 419 215 93 19 chr6 170441494 170441601 -18837953 - FAM SINE Alu -9 40 1 483 76 0 0 chr6 170441602 170441668 -18837886 + LTR7 LTR ERV1 24 89 -361 14310 79 5 6 chr6 170441668 170443739 -18835815 + HERVH LTR ERV1 918 2987 -4726 849 135 20 0 chr6 170443733 170443881 -18835673 + HERVH LTR ERV1 3140 3290 -4423 * 3100 117 4 10 chr6 170443871 170444376 -18835178 + HERVH LTR ERV1 3492 3993 -3720 3887 142 21 8 chr6 170444378 170445031 -18834523 + HERVH LTR ERV1 4488 5149 -2564 874 127 42 16 chr6 170445032 170445221 -18834333 + HERVH LTR ERV1 5600 5793 -1920 1668 67 12 20 chr6 170445323 170445578 -18833976 + HERVH LTR ERV1 7461 7713 0 1451 156 100 56 chr6 170445578 170446007 -18833547 + LTR7 LTR ERV1 1 448 -2 336 188 0 0 chr6 170446009 170446073 -18833481 - FAM SINE Alu -77 98 35 249 0 0 0 chr6 170446073 170446102 -18833452 + LTR32 LTR ERVL 420 448 -23 382 357 48 24 chr6 170446803 170447055 -18832499 + L1 LINE L1 3791 4048 -2098 1668 199 27 6 chr6 170447322 170447653 -18831901 + MLT2C1 LTR ERVL 1 338 -59 206 118 0 0 chr6 170447664 170447698 -18831856 + (GA)n Simple_repeat Simple_repeat 1 34 0 6523 90 12 0 chr6 170448071 170449169 -18830385 - L1PA11 LINE L1 -1 6173 5069 24 32 0 0 chr6 170449523 170449554 -18830000 + AT_rich Low_complexity Low_complexity 1 31 0 343 268 85 26 chr6 170450011 170450164 -18829390 + MIR3 SINE MIR 40 201 -7 22 0 0 0 chr6 170450389 170450411 -18829143 + AT_rich Low_complexity Low_complexity 1 22 0 590 134 10 0 chr6 170450478 170450575 -18828979 + MLT2B2 LTR ERVL 1 98 -417 * 627 183 193 11 chr6 170450573 170450736 -18828818 + MLT2B1 LTR ERVL 233 477 -43 1590 99 5 5 chr6 170452357 170452601 -18826953 + AluSg/x SINE Alu 72 315 0 262 317 33 25 chr6 170452931 170453051 -18826503 + MIR SINE MIR 25 145 -63 14411 146 16 9 chr6 170453512 170456156 -18823398 - L1PA11 LINE L1 0 6174 3501 239 0 0 31 chr6 170456156 170456188 -18823366 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 14411 146 16 9 chr6 170456188 170456834 -18822720 - L1PA11 LINE L1 -2673 3501 2861 241 138 17 17 chr6 170457239 170457297 -18822257 + CT-rich Low_complexity Low_complexity 1 58 0 2243 108 7 0 chr6 170457965 170458270 -18821284 - AluSx SINE Alu 0 312 6 2083 146 3 0 chr6 170459520 170459828 -18819726 - AluSx SINE Alu -1 311 3 23 0 0 0 chr6 170459832 170459855 -18819699 + AT_rich Low_complexity Low_complexity 1 23 0 1564 255 30 62 chr6 170460390 170460951 -18818603 - MER77 LTR ERV1 -8 597 55 2312 246 59 6 chr6 170461185 170461893 -18817661 - L1MB7 LINE L1 -11 6173 5428 2488 77 0 0 chr6 170461903 170462213 -18817341 - AluY SINE Alu -1 310 1 808 218 135 0 chr6 170463068 170463261 -18816293 + MER20 DNA MER1_type 1 219 0 403 275 29 65 chr6 170464129 170464267 -18815287 - LTR16C LTR ERVL -183 308 176 238 246 9 82 chr6 170464408 170464518 -18815036 + HAL1b LINE L1 787 888 -460 201 275 235 20 chr6 170465776 170465925 -18813629 + MER5A DNA MER1_type 7 187 -2 * 511 223 19 0 chr6 170465831 170465934 -18813620 - MER5A DNA MER1_type -77 112 8 23 54 0 0 chr6 170466039 170466076 -18813478 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 170466096 170466117 -18813437 + AT_rich Low_complexity Low_complexity 1 21 0 2575 86 3 3 chr6 170467438 170467789 -18811765 + L1PB2 LINE L1 5801 6151 0 229 263 21 32 chr6 170468863 170468958 -18810596 + L1MC4a LINE L1 4919 5012 -1134 706 245 0 18 chr6 170468975 170469138 -18810416 + AluJo SINE Alu 117 276 -36 231 36 0 0 chr6 170469147 170469175 -18810379 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1509 268 102 22 chr6 170469375 170469601 -18809953 + L1MC4a LINE L1 5255 5462 -2346 1981 119 0 4 chr6 170469601 170469879 -18809675 + AluSx SINE Alu 36 312 0 1509 268 102 22 chr6 170469879 170470278 -18809276 + L1MC4a LINE L1 5462 5930 -1878 322 318 94 67 chr6 170470356 170470759 -18808795 + L1MC4a LINE L1 6045 6458 -1350 1759 231 96 81 chr6 170470938 170471762 -18807792 + L1MC5 LINE L1 6740 7589 -372 1981 126 3 29 chr6 170471762 170472072 -18807482 + AluSc SINE Alu 1 302 -7 1759 231 96 81 chr6 170472072 170472433 -18807121 + L1MC5 LINE L1 7589 7943 -18 383 363 38 21 chr6 170472575 170472815 -18806739 - L2 LINE L2 -468 2846 2603 6882 60 6 1 chr6 170472816 170473708 -18805846 - L1PA7 LINE L1 -5 6149 5254 12371 100 4 5 chr6 170473713 170475509 -18804045 + L1PA7 LINE L1 3456 5249 -897 255 345 52 9 chr6 170475525 170475641 -18803913 - L2 LINE L2 -791 2523 2403 463 63 48 0 chr6 170476078 170476141 -18803413 - MSTB LTR MaLR -48 378 313 479 185 119 46 chr6 170476143 170476294 -18803260 + MER51B LTR ERV1 1 162 -215 * 2077 122 3 6 chr6 170476291 170476602 -18802952 + MER51B LTR ERV1 68 377 0 1219 185 141 7 chr6 170476605 170476881 -18802673 - MSTA LTR MaLR -115 313 1 1323 54 0 0 chr6 170476926 170477094 -18802460 + L1P LINE L1 5036 5203 -943 367 130 0 0 chr6 170477099 170477153 -18802401 - MSTB LTR MaLR -372 54 1 6156 170 67 15 chr6 170477153 170478545 -18801009 - MSTB-int LTR MaLR 0 1580 1 714 140 32 34 chr6 170478545 170478698 -18800856 - MSTB LTR MaLR 0 426 219 3581 106 32 0 chr6 170478698 170479235 -18800319 + MER41A LTR ERV1 1 554 0 714 140 32 34 chr6 170479235 170479262 -18800292 - MSTB LTR MaLR -207 219 193 2524 68 0 0 chr6 170480312 170480621 -18798933 + AluY SINE Alu 1 309 -2 384 59 0 0 chr6 170480881 170480932 -18798622 + (CA)n Simple_repeat Simple_repeat 1 51 0 1052 68 0 7 chr6 170481897 170482044 -18797510 + (TTC)n Simple_repeat Simple_repeat 1 146 0 485 125 34 0 chr6 170482939 170483027 -18796527 + L1MB1 LINE L1 6078 6168 0 1823 95 42 4 chr6 170484226 170484488 -18795066 - AluSc SINE Alu -14 295 24 291 244 44 0 chr6 170484506 170484596 -18794958 + L1ME4a LINE L1 5985 6078 -43 21 0 0 0 chr6 170484616 170484637 -18794917 + AT_rich Low_complexity Low_complexity 1 21 0 639 0 0 56 chr6 170485240 170485330 -18794224 + L1PA4 LINE L1 6071 6155 0 483 170 54 27 chr6 170487107 170487219 -18792335 + MER53 DNA DNA 1 115 -74 2275 86 3 23 chr6 170487555 170487859 -18791695 + AluSp SINE Alu 1 298 -15 203 0 37 0 chr6 170488749 170488776 -18790778 + (TAGA)n Simple_repeat Simple_repeat 1 28 0 1654 123 77 5 chr6 170489720 170490140 -18789414 - MER51A LTR ERV1 -114 520 1 1160 92 46 0 chr6 170490164 170490338 -18789216 - L1MA2 LINE L1 0 6304 6123 1481 195 7 13 chr6 170491272 170491570 -18787984 - MER58B DNA MER1_type -9 332 37 240 336 15 7 chr6 170492426 170492563 -18786991 + MER103 DNA DNA 11 148 -18 180 0 0 0 chr6 170492582 170492602 -18786952 + (TG)n Simple_repeat Simple_repeat 2 21 0 29 0 0 0 chr6 170493223 170493252 -18786302 + AT_rich Low_complexity Low_complexity 1 29 0 667 291 119 39 chr6 170493386 170494197 -18785357 - L1ME3A LINE L1 -14 6156 5254 21 36 0 0 chr6 170494205 170494233 -18785321 + AT_rich Low_complexity Low_complexity 1 28 0 452 246 93 47 chr6 170494242 170494457 -18785097 - MLT1I LTR MaLR -7 402 178 259 325 32 26 chr6 170494459 170494613 -18784941 - MLT1J2 LTR MaLR -293 157 3 2282 99 3 0 chr6 170494963 170495257 -18784297 - AluSx SINE Alu -15 297 3 353 303 76 8 chr6 170496114 170496246 -18783308 - MIR SINE MIR -118 144 4 323 251 141 26 chr6 170497399 170497590 -18781964 - L1ME2 LINE L1 -284 5880 5665 5257 58 0 12 chr6 170497740 170498424 -18781130 + L1P LINE L1 96 771 -5375 * 9762 191 23 9 chr6 170498420 170501618 -18777936 - L1PA16 LINE L1 -25 6141 2903 1650 236 62 72 chr6 170501961 170502687 -18776867 - L1ME3 LINE L1 -30 6132 5414 1446 108 100 0 chr6 170503132 170503363 -18776191 + AluSx SINE Alu 40 293 -19 785 167 23 0 chr6 170503363 170503537 -18776017 + GA-rich Low_complexity Low_complexity 1 178 0 202 77 0 0 chr6 170503537 170503563 -18775991 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 823 239 26 47 chr6 170503743 170503977 -18775577 + MIR SINE MIR 2 230 -32 356 296 120 65 chr6 170503990 170504720 -18774834 - L1M4 LINE L1 -2677 3469 2682 1637 199 7 7 chr6 170504986 170505316 -18774238 - AluJo SINE Alu 0 312 3 28 61 0 0 chr6 170506508 170506557 -18772997 + AT_rich Low_complexity Low_complexity 1 49 0 1544 216 3 3 chr6 170507612 170507908 -18771646 - AluJo SINE Alu -16 296 1 297 0 0 0 chr6 170508296 170508329 -18771225 + (TG)n Simple_repeat Simple_repeat 2 34 0 2379 285 142 28 chr6 170509015 170509999 -18769555 + L2 LINE L2 1280 2437 -877 2047 99 0 11 chr6 170509999 170510271 -18769283 - AluSx SINE Alu -43 269 1 2379 285 142 28 chr6 170510271 170510530 -18769024 + L2 LINE L2 2437 2665 -649 497 307 140 36 chr6 170510534 170511040 -18768514 - MLT1H1 LTR MaLR 0 555 5 570 271 18 12 chr6 170511047 170511217 -18768337 + L2 LINE L2 2686 2856 -458 184 338 15 15 chr6 170511539 170511607 -18767947 - MIR SINE MIR -103 105 38 3444 178 82 6 chr6 170512482 170513185 -18766369 + Tigger2 DNA MER2_type 1 757 -1961 1399 139 4 73 chr6 170513239 170513512 -18766042 + Tigger2 DNA MER2_type 2464 2717 -1 1239 221 66 56 chr6 170513956 170514364 -18765190 + MLT2D LTR ERVL 1 412 -2 1896 14 0 0 chr6 170514451 170514660 -18764894 - AluY SINE Alu -2 309 101 1741 243 104 21 chr6 170514673 170515204 -18764350 + MER90 LTR ERV1 1 575 0 1760 266 64 11 chr6 170515753 170516287 -18763267 + L1MEc LINE L1 39 600 -5796 2634 246 55 18 chr6 170516356 170517303 -18762251 - L1MEc LINE L1 -2917 3298 2317 * 3491 251 47 22 chr6 170517290 170517743 -18761811 - L1MEc LINE L1 -5108 1288 848 2824 77 99 10 chr6 170517743 170517783 -18761771 - MLT2A2 LTR ERVL 0 453 418 369 0 0 0 chr6 170517783 170517824 -18761730 + (CA)n Simple_repeat Simple_repeat 2 42 0 2824 77 99 10 chr6 170517824 170518199 -18761355 - MLT2A2 LTR ERVL -35 418 1 3491 251 47 22 chr6 170518199 170518939 -18760615 - L1MEc LINE L1 -5548 848 36 386 350 92 39 chr6 170519561 170519734 -18759820 - L2 LINE L2 0 3313 3151 1867 156 0 14 chr6 170519734 170520047 -18759507 + AluSx SINE Alu 1 309 0 386 350 92 39 chr6 170520047 170520363 -18759191 - L2 LINE L2 -162 3151 2800 388 370 50 4 chr6 170520405 170520643 -18758911 - L2 LINE L2 -866 2448 2200 3642 184 25 165 chr6 170520644 170522059 -18757495 - MER52A LTR ERV1 -1 1754 538 2060 149 0 3 chr6 170522174 170522476 -18757078 + AluSx SINE Alu 1 301 -11 15054 159 15 17 chr6 170522476 170524614 -18754940 + L1MA2 LINE L1 2723 4864 -2859 1597 179 4 4 chr6 170524614 170524871 -18754683 + AluSx SINE Alu 1 257 -55 449 33 0 17 chr6 170524871 170524931 -18754623 + (GAAAA)n Simple_repeat Simple_repeat 1 59 0 15054 159 15 17 chr6 170524931 170527802 -18751752 + L1MA2 LINE L1 4862 7722 -1 310 338 68 21 chr6 170527820 170528054 -18751500 - L2 LINE L2 -1363 1951 1707 603 282 112 29 chr6 170528741 170528982 -18750572 + MIR SINE MIR 1 261 -1 1554 158 62 71 chr6 170531440 170531794 -18747760 - MLT1A1 LTR MaLR 0 365 15 214 298 97 26 chr6 170532232 170532346 -18747208 - L2 LINE L2 -87 3226 3105 726 296 44 41 chr6 170532433 170532798 -18746756 - MLT1H LTR MaLR -181 368 3 447 324 83 14 chr6 170532807 170533124 -18746430 - L2 LINE L2 -239 3074 2696 321 290 67 35 chr6 170533694 170533949 -18745605 + L1P LINE L1 4405 4667 -1479 1735 266 87 16 chr6 170534148 170535037 -18744517 + L1MC4a LINE L1 4889 5403 -743 198 135 0 0 chr6 170535810 170535847 -18743707 + L2 LINE L2 3113 3149 -164 396 282 46 15 chr6 170535909 170536040 -18743514 + L2 LINE L2 3179 3313 0 180 398 9 0 chr6 170536445 170536553 -18743001 + MIR SINE MIR 54 162 -100 2121 138 0 3 chr6 170536881 170537192 -18742362 + AluSx SINE Alu 3 312 0 1294 117 5 22 chr6 170537704 170537926 -18741628 - L1MA2 LINE L1 0 6304 6087 4073 151 39 28 chr6 170537974 170538055 -18741499 - L1MC1 LINE L1 -12 6321 6242 180 0 0 0 chr6 170538055 170538075 -18741479 + (CA)n Simple_repeat Simple_repeat 1 20 0 4073 151 39 28 chr6 170538075 170538480 -18741074 - L1MC1 LINE L1 -91 6242 5822 1817 159 47 0 chr6 170538480 170538776 -18740778 - AluJb SINE Alu -2 310 1 4073 151 39 28 chr6 170538776 170539041 -18740513 - L1MC1 LINE L1 -511 5822 5561 329 87 0 0 chr6 170539044 170539090 -18740464 - L1MC/D LINE L1 -637 5605 5560 697 186 38 13 chr6 170539090 170539326 -18740228 - Ricksha DNA DNA -13 3233 3052 299 87 22 0 chr6 170539325 170539371 -18740183 - Ricksha DNA DNA -1127 54 8 * 5227 212 33 26 chr6 170539384 170541013 -18738541 - L1MC/D LINE L1 -781 5563 3857 20703 170 21 12 chr6 170541181 170547790 -18731764 - L1 LINE L1 -876 6689 19 2461 107 28 3 chr6 170548384 170548747 -18730807 + THE1C LTR MaLR 1 372 -3 655 100 90 0 chr6 170548750 170548850 -18730704 + THE1C LTR MaLR 267 375 0 384 90 0 3 chr6 170549428 170549489 -18730065 + AluSg/x SINE Alu 77 127 -173 2133 124 0 19 chr6 170550195 170550509 -18729045 + AluSx SINE Alu 1 308 -4 402 292 58 35 chr6 170550948 170551119 -18728435 - MIR SINE MIR -5 257 83 1771 156 18 3 chr6 170551190 170551472 -18728082 - AluJo SINE Alu -24 288 3 477 325 153 29 chr6 170551515 170551894 -18727660 - L2 LINE L2 -840 2474 2049 2021 248 14 14 chr6 170552500 170553005 -18726549 + Charlie1a DNA MER1_type 1 505 -950 2344 84 0 13 chr6 170553005 170553316 -18726238 + AluY SINE Alu 1 307 -4 482 250 22 0 chr6 170553335 170553471 -18726083 + Charlie1a DNA MER1_type 1316 1454 -1 277 349 41 12 chr6 170553816 170553985 -18725569 - MIR SINE MIR -76 186 13 26 0 0 0 chr6 170555471 170555497 -18724057 + AT_rich Low_complexity Low_complexity 1 26 0 308 358 12 24 chr6 170555747 170555912 -18723642 + L3 LINE CR1 727 889 -688 222 257 162 0 chr6 170555944 170556018 -18723536 + L2 LINE L2 3178 3263 -9 366 320 63 29 chr6 170556191 170556366 -18723188 + L3 LINE CR1 1051 1231 -346 426 285 47 41 chr6 170556430 170556602 -18722952 - MIR SINE MIR -61 201 29 240 151 140 75 chr6 170556602 170556695 -18722859 + L3 LINE CR1 1282 1380 -197 321 278 181 14 chr6 170560224 170560368 -18719186 - MIR3 SINE MIR -3 205 38 207 162 0 0 chr6 170562261 170562298 -18717256 + (TA)n Simple_repeat Simple_repeat 1 37 0 219 152 0 0 chr6 170562843 170562889 -18716665 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 226 256 49 0 chr6 170562970 170563052 -18716502 + (CATATA)n Simple_repeat Simple_repeat 3 88 0 25 65 0 0 chr6 170563261 170563307 -18716247 + AT_rich Low_complexity Low_complexity 1 46 0 1783 168 3 10 chr6 170563685 170563995 -18715559 + AluSx SINE Alu 1 308 -4 251 245 20 61 chr6 170565515 170565613 -18713941 + MIR3 SINE MIR 103 196 -12 494 269 55 89 chr6 170565780 170566107 -18713447 - MER76 LTR ERV -31 657 342 300 70 0 0 chr6 170566181 170566224 -18713330 + (TC)n Simple_repeat Simple_repeat 2 44 0 194 0 39 0 chr6 170566458 170566484 -18713070 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1831 173 35 9 chr6 170566522 170566869 -18712685 - MLT1A1 LTR MaLR 0 365 10 2997 207 16 49 chr6 170567646 170568314 -18711240 + MER82 DNA MER2_type 2 647 -6 2453 174 9 0 chr6 170568545 170568987 -18710567 - L1 LINE L1 -2291 3855 3410 4378 93 8 23 chr6 170568987 170569648 -18709906 + L1MA1 LINE L1 5642 6296 -6 22 35 0 0 chr6 170569650 170569679 -18709875 + AT_rich Low_complexity Low_complexity 1 29 0 5907 91 2 0 chr6 170570290 170571095 -18708459 + L1PA8 LINE L1 5362 6168 -4 1380 228 26 7 chr6 170571100 170571403 -18708151 - MER58B DNA MER1_type -32 309 1 541 273 117 0 chr6 170572782 170572832 -18706722 + MER5B DNA MER1_type 1 44 -134 2484 65 3 0 chr6 170572832 170573138 -18706416 + AluY SINE Alu 3 309 -2 541 273 117 0 chr6 170573138 170573241 -18706313 + MER5B DNA MER1_type 44 172 -6 250 209 0 0 chr6 170573248 170573291 -18706263 - MIR3 SINE MIR -49 159 117 764 118 0 59 chr6 170573507 170573643 -18705911 + L1MA2 LINE L1 6177 6304 0 2118 134 0 6 chr6 170573848 170574162 -18705392 + AluSx SINE Alu 1 312 0 2363 98 0 0 chr6 170574857 170575164 -18704390 - AluSc SINE Alu -2 307 1 364 237 67 59 chr6 170575982 170576117 -18703437 - L2 LINE L2 -20 3293 3158 339 136 0 0 chr6 170577434 170577493 -18702061 + (CAT)n Simple_repeat Simple_repeat 1 59 0 328 371 14 7 chr6 170577565 170577705 -18701849 - MIR SINE MIR -74 188 48 203 220 40 0 chr6 170578349 170578399 -18701155 + L2 LINE L2 3193 3244 -69 2402 120 11 3 chr6 170580213 170580581 -18698973 + L1PA15 LINE L1 5794 6164 -1 33 43 0 0 chr6 170582136 170582183 -18697371 + AT_rich Low_complexity Low_complexity 1 47 0 9345 230 38 22 chr6 170582241 170583893 -18695661 - L1MB3 LINE L1 -27 6392 4768 2148 112 0 0 chr6 170583893 170584179 -18695375 - AluSc SINE Alu -12 297 12 9345 230 38 22 chr6 170584179 170585231 -18694323 - L1MB3 LINE L1 -1651 4768 3735 848 247 49 95 chr6 170585231 170585640 -18693914 + MLT1B LTR MaLR 1 390 0 9345 230 38 22 chr6 170585640 170586637 -18692917 - L1MB3 LINE L1 -2684 3735 2615 824 176 7 0 chr6 170586654 170586807 -18692747 - L1MB3 LINE L1 -4509 1875 1722 352 116 43 0 chr6 170586812 170586881 -18692673 - Charlie5 DNA MER1_type -123 2489 2418 4701 172 42 15 chr6 170586893 170587989 -18691565 - L1MA8 LINE L1 -42 6249 5111 2283 93 0 0 chr6 170587989 170588279 -18691275 - AluSc SINE Alu -19 290 1 4701 172 42 15 chr6 170588279 170588546 -18691008 - L1MA8 LINE L1 -1180 5111 4853 3165 194 17 20 chr6 170588546 170589189 -18690365 - L1MB3 LINE L1 -5727 657 17 245 294 120 11 chr6 170589208 170589300 -18690254 + MIR SINE MIR 161 262 0 1142 248 32 67 chr6 170590250 170590792 -18688762 - MER90 LTR ERV1 0 575 2 1813 146 40 0 chr6 170592466 170592741 -18686813 + AluSx SINE Alu 4 289 -23 871 250 14 19 chr6 170592871 170593083 -18686471 + MIR SINE MIR 39 249 -13 364 328 111 48 chr6 170593083 170593220 -18686334 + L1MEd LINE L1 895 1022 -1468 2100 134 0 3 chr6 170593220 170593533 -18686021 + AluSx SINE Alu 1 312 0 364 328 111 48 chr6 170593533 170593966 -18685588 + L1MEd LINE L1 1022 1589 -901 238 268 0 0 chr6 170593995 170594066 -18685488 + HAL1 LINE L1 2315 2385 -122 1769 137 4 0 chr6 170594195 170594451 -18685103 - AluSx SINE Alu -12 300 44 452 273 42 3 chr6 170594536 170594682 -18684872 + MIR SINE MIR 19 167 -54 254 222 71 10 chr6 170594774 170594873 -18684681 + L1ME4a LINE L1 6005 6109 -12 341 302 112 17 chr6 170595099 170595278 -18684276 + L1MC/D LINE L1 5276 5471 -2337 329 114 0 0 chr6 170595278 170595322 -18684232 + Alu SINE Alu 1 44 -258 269 272 97 70 chr6 170595456 170595570 -18683984 + L2 LINE L2 1221 1337 -1977 371 299 187 12 chr6 170595747 170595988 -18683566 + L2 LINE L2 1397 1679 -1635 871 152 0 0 chr6 170596028 170596160 -18683394 - AluSq/x SINE Alu -181 132 1 707 305 162 33 chr6 170596172 170596191 -18683363 + L2 LINE L2 1693 1708 -1606 2184 120 0 0 chr6 170596191 170596479 -18683075 + AluSx SINE Alu 1 291 -21 222 37 0 0 chr6 170596479 170596506 -18683048 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 2184 120 0 0 chr6 170596506 170596517 -18683037 + AluSx SINE Alu 290 300 -12 707 305 162 33 chr6 170596517 170597103 -18682451 + L2 LINE L2 1708 2376 -938 1796 163 3 26 chr6 170597331 170597637 -18681917 + AluJb SINE Alu 1 299 -13 1086 223 55 78 chr6 170598265 170598457 -18681097 - MER69 DNA AcHobo -21 2505 2310 827 220 0 6 chr6 170598457 170598616 -18680938 - FRAM SINE Alu -7 159 2 1086 223 55 78 chr6 170598616 170598935 -18680619 - MER69 DNA AcHobo -216 2310 2006 851 282 128 11 chr6 170598926 170599277 -18680277 - MER69 DNA AcHobo -1646 880 489 * 2419 70 0 10 chr6 170599964 170600278 -18679276 + AluY SINE Alu 1 311 0 220 149 30 60 chr6 170601026 170601093 -18678461 + T-rich Low_complexity Low_complexity 4 68 0 2649 39 0 7 chr6 170602403 170602712 -18676842 + AluY SINE Alu 1 307 -4 315 0 0 0 chr6 170603660 170603695 -18675859 + (CA)n Simple_repeat Simple_repeat 2 36 0 1357 133 205 0 chr6 170604631 170604880 -18674674 - AluSq SINE Alu -3 300 1 486 142 44 18 chr6 170605166 170605279 -18674275 - L1MA8 LINE L1 0 6291 6176 21 0 0 0 chr6 170605353 170605374 -18674180 + AT_rich Low_complexity Low_complexity 1 21 0 292 284 37 52 chr6 170606414 170606548 -18673006 - MLT1K LTR MaLR -415 173 42 1392 231 18 79 chr6 170606695 170607153 -18672401 + L1ME1 LINE L1 5630 6048 -118 612 270 143 0 chr6 170607153 170607349 -18672205 - MER58A DNA MER1_type 0 224 1 1392 231 18 79 chr6 170607349 170607457 -18672097 + L1ME1 LINE L1 6048 6161 -5 1588 211 7 3 chr6 170608053 170608351 -18671203 + AluJo SINE Alu 7 305 -7 29 78 0 0 chr6 170610799 170610863 -18668691 + AT_rich Low_complexity Low_complexity 1 64 0 21 71 0 0 chr6 170611095 170611137 -18668417 + AT_rich Low_complexity Low_complexity 1 42 0 286 70 0 0 chr6 170611747 170611790 -18667764 - MADE1 DNA Mariner -37 43 1 1490 249 92 20 chr6 170613136 170613638 -18665916 - MLT1H LTR MaLR -4 545 8 209 232 89 0 chr6 170613677 170613733 -18665821 + L2 LINE L2 3162 3222 -50 2319 114 3 0 chr6 170613752 170614059 -18665495 + AluSq SINE Alu 1 308 -5 2029 133 10 10 chr6 170614794 170615102 -18664452 - AluSx SINE Alu -4 308 1 586 65 0 0 chr6 170615211 170615288 -18664266 + MADE1 DNA Mariner 3 79 -1 264 264 36 93 chr6 170615403 170615543 -18664011 - MIR3 SINE MIR -73 135 4 240 35 0 0 chr6 170616329 170616358 -18663196 + (TG)n Simple_repeat Simple_repeat 1 29 0 281 226 108 39 chr6 170616588 170616690 -18662864 - MIR SINE MIR -89 173 65 859 167 0 0 chr6 170616690 170616822 -18662732 + FLAM_C SINE Alu 1 132 -11 23 33 0 0 chr6 170616822 170616852 -18662702 + AT_rich Low_complexity Low_complexity 1 30 0 1507 204 3 21 chr6 170617740 170618025 -18661529 + AluJb SINE Alu 1 280 -32 468 51 0 0 chr6 170618027 170618086 -18661468 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 830 144 29 6 chr6 170618097 170618271 -18661283 + GA-rich Low_complexity Low_complexity 1 178 0 249 162 0 0 chr6 170618275 170618312 -18661242 + polypurine Low_complexity Low_complexity 4 40 0 294 206 0 0 chr6 170618366 170618429 -18661125 + (CATATA)n Simple_repeat Simple_repeat 1 63 0 437 183 45 0 chr6 170618569 170619027 -18660527 + (CATAT)n Simple_repeat Simple_repeat 1 478 0 28 71 0 0 chr6 170619590 170619646 -18659908 + AT_rich Low_complexity Low_complexity 1 56 0 242 125 21 0 chr6 170619658 170619706 -18659848 + (TA)n Simple_repeat Simple_repeat 1 49 0 211 379 0 23 chr6 170620365 170620452 -18659102 - MIR3 SINE MIR -16 192 108 21 0 0 0 chr6 170620593 170620614 -18658940 + AT_rich Low_complexity Low_complexity 1 21 0 1524 192 4 0 chr6 170620683 170620954 -18658600 - AluJb SINE Alu -13 299 28 368 287 20 20 chr6 170620981 170621131 -18658423 + MIR SINE MIR 60 209 -53 567 167 25 17 chr6 170621326 170621446 -18658108 - MER20 DNA MER1_type -68 151 31 207 300 107 64 chr6 170621475 170621615 -18657939 - MIR3 SINE MIR -45 163 18 234 139 23 0 chr6 170621654 170621697 -18657857 - MSTA LTR MaLR -384 44 1 2122 148 0 0 chr6 170621827 170622132 -18657422 - AluSx SINE Alu -7 305 1 312 27 0 0 chr6 170623906 170623943 -18655611 + (TG)n Simple_repeat Simple_repeat 2 38 0 622 327 83 21 chr6 170624142 170624469 -18655085 + L3 LINE CR1 1112 1458 -119 2369 101 0 0 chr6 170626481 170626779 -18652775 + AluSg SINE Alu 1 298 -12 2573 71 0 0 chr6 170627124 170627435 -18652119 + AluY SINE Alu 1 311 0 2231 94 3 0 chr6 170628158 170628446 -18651108 - AluSp SINE Alu -17 296 8 226 237 34 0 chr6 170628475 170628534 -18651020 + MER97c DNA MER1_type? 1030 1090 0 5727 81 50 14 chr6 170629061 170630084 -18649470 - L1PB1 LINE L1 -1 6150 5106 378 61 0 0 chr6 170630203 170630252 -18649302 + (CA)n Simple_repeat Simple_repeat 2 50 0 262 335 32 13 chr6 170630300 170630455 -18649099 + L1MC/D LINE L1 5494 5651 -2134 419 261 58 0 chr6 170630507 170630645 -18648909 - L1ME3A LINE L1 -336 5834 5689 5146 145 13 43 chr6 170630649 170630859 -18648695 - L1MC2 LINE L1 -8 6336 6121 2242 93 0 0 chr6 170630859 170631178 -18648376 - AluSx SINE Alu 0 320 2 5146 145 13 43 chr6 170631178 170631502 -18648052 - L1MC2 LINE L1 -223 6121 5789 1810 80 0 0 chr6 170631502 170631727 -18647827 - AluY SINE Alu -17 294 70 5146 145 13 43 chr6 170631727 170632225 -18647329 - L1MC2 LINE L1 -555 5789 5334 273 163 62 12 chr6 170632240 170632320 -18647234 - L1MC2 LINE L1 -2419 5366 5283 898 130 27 94 chr6 170632566 170632613 -18646941 - L1MA6 LINE L1 -9 6291 6242 1935 92 92 0 chr6 170632613 170632884 -18646670 - AluSx SINE Alu -16 296 1 898 130 27 94 chr6 170632884 170633059 -18646495 - L1MA6 LINE L1 -58 6242 6084 261 200 43 0 chr6 170633063 170633133 -18646421 - L1MC2 LINE L1 -890 5256 5184 * 570 253 61 20 chr6 170633130 170633366 -18646188 - L1ME3A LINE L1 -468 5702 5450 518 324 51 17 chr6 170633397 170633690 -18645864 - L1ME3A LINE L1 -799 5347 5045 623 263 67 76 chr6 170633931 170634638 -18644916 - L1ME3A LINE L1 -1402 4744 4045 329 301 0 121 chr6 170634694 170634867 -18644687 - MIR SINE MIR -97 165 14 1889 288 85 39 chr6 170635085 170635715 -18643839 - L2 LINE L2 -1 3312 2712 2612 55 0 0 chr6 170635715 170636024 -18643530 + AluY SINE Alu 1 309 -2 1889 288 85 39 chr6 170636024 170636652 -18642902 - L2 LINE L2 -601 2712 1997 1156 92 41 31 chr6 170636706 170636901 -18642653 - MER30 DNA MER1_type -33 197 1 186 209 0 0 chr6 170638016 170638059 -18641495 + (TA)n Simple_repeat Simple_repeat 2 44 0 364 326 29 64 chr6 170638079 170638317 -18641237 - L1ME3A LINE L1 -236 5926 5682 484 190 138 0 chr6 170638491 170638607 -18640947 + L1MA9 LINE L1 6024 6155 -157 1884 153 37 0 chr6 170638652 170638952 -18640602 - AluSx SINE Alu -1 311 1 297 266 83 0 chr6 170639101 170639210 -18640344 - L1ME3A LINE L1 -1537 4609 4492 2349 96 0 0 chr6 170639292 170639593 -18639961 + AluY SINE Alu 1 301 -10 341 93 19 0 chr6 170640514 170640568 -18638986 - L1PA8 LINE L1 -9 6163 6109 217 260 40 0 chr6 170641092 170641142 -18638412 + MIR SINE MIR 5 56 -206 219 323 32 0 chr6 170641183 170641276 -18638278 + MIR SINE MIR 163 258 -4 25 31 0 0 chr6 170641377 170641409 -18638145 + AT_rich Low_complexity Low_complexity 1 32 0 261 0 0 0 chr6 170642155 170642184 -18637370 + (TA)n Simple_repeat Simple_repeat 1 29 0 465 206 171 11 chr6 170642583 170642734 -18636820 + MER5A DNA MER1_type 4 182 -7 34834 93 13 10 chr6 170644271 170650399 -18629155 - L1PA6 LINE L1 -2 6152 11 3006 176 36 23 chr6 170650919 170651526 -18628028 - L1MB8 LINE L1 -2 6176 5562 1124 166 0 0 chr6 170651531 170651706 -18627848 + FRAM SINE Alu 1 170 -6 1238 159 21 1 chr6 170651706 170651921 -18627633 - L1MB8 LINE L1 -601 5553 5340 399 330 57 43 chr6 170652637 170652916 -18626638 - MLT1K LTR MaLR -251 337 55 196 213 64 0 chr6 170653022 170653069 -18626485 - MER5A DNA MER1_type 0 189 140 993 157 44 117 chr6 170653069 170653212 -18626342 + MLT1C-int LTR MaLR 1118 1233 -138 1912 132 4 4 chr6 170653212 170653492 -18626062 - AluSx SINE Alu -32 280 1 993 157 44 117 chr6 170653492 170653622 -18625932 + MLT1C-int LTR MaLR 1233 1371 0 315 53 0 0 chr6 170653626 170653664 -18625890 + MLT1C LTR MaLR 4 41 -426 2211 126 0 0 chr6 170653664 170653966 -18625588 + AluSq SINE Alu 1 302 -11 1301 203 142 7 chr6 170653983 170654264 -18625290 + MLT1C LTR MaLR 27 345 -122 563 174 31 0 chr6 170654270 170654368 -18625186 - MLT1C LTR MaLR -18 449 349 209 355 66 0 chr6 170654901 170654977 -18624577 + L2 LINE L2 3154 3234 -38 23 0 0 0 chr6 170655661 170655684 -18623870 + AT_rich Low_complexity Low_complexity 1 23 0 282 197 16 16 chr6 170655829 170655890 -18623664 - L2 LINE L2 -5 3308 3248 1870 248 80 30 chr6 170656379 170656944 -18622610 - MLT1E LTR MaLR 0 593 1 295 230 66 82 chr6 170657230 170657426 -18622128 + L1ME3A LINE L1 5963 6155 -15 24 77 0 0 chr6 170658366 170658418 -18621136 + AT_rich Low_complexity Low_complexity 1 52 0 337 125 12 25 chr6 170658688 170658768 -18620786 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 1027 288 61 57 chr6 170658886 170659379 -18620175 - L2 LINE L2 0 3313 2819 * 2843 262 107 50 chr6 170659347 170660720 -18618834 - L2 LINE L2 -646 2668 1218 229 297 27 14 chr6 170660763 170660837 -18618717 - L2 LINE L2 -5 3267 3193 2279 108 6 13 chr6 170661057 170661371 -18618183 + AluSx SINE Alu 1 312 0 26 64 0 0 chr6 170662043 170662090 -18617464 + AT_rich Low_complexity Low_complexity 1 47 0 212 250 162 15 chr6 170662281 170662349 -18617205 + MIR SINE MIR 42 119 -89 185 0 40 0 chr6 170664463 170664488 -18615066 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2063 102 57 0 chr6 170666772 170667055 -18612499 - AluSx SINE Alu -13 299 1 22 35 0 0 chr6 170667826 170667855 -18611699 + AT_rich Low_complexity Low_complexity 1 29 0 770 224 256 15 chr6 170668627 170668868 -18610686 - MLT1D LTR MaLR -2 503 321 2240 100 0 3 chr6 170668868 170669168 -18610386 - AluSx SINE Alu -13 299 1 770 224 256 15 chr6 170669168 170669323 -18610231 - MLT1D LTR MaLR -184 321 1 1703 181 0 28 chr6 170669532 170669852 -18609702 + AluJo SINE Alu 2 312 0 1087 72 6 28 chr6 170670176 170670356 -18609198 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 180 103 0 0 chr6 170670359 170670383 -18609171 + (TC)n Simple_repeat Simple_repeat 2 26 0 1917 122 37 10 chr6 170670383 170670678 -18608876 - AluSx SINE Alu -9 303 1 1269 201 69 67 chr6 170670931 170671365 -18608189 + LTR16A1 LTR ERVL 5 439 -18 1212 328 67 58 chr6 170671640 170672798 -18606756 + HERV16 LTR ERVL 319 1487 -3509 207 0 0 0 chr6 170672911 170672934 -18606620 + (TC)n Simple_repeat Simple_repeat 2 24 0 279 79 0 0 chr6 170672934 170672972 -18606582 + (CA)n Simple_repeat Simple_repeat 2 39 0 701 282 109 42 chr6 170672990 170673105 -18606449 + HERV16 LTR ERVL 1688 1794 -3202 2671 113 8 19 chr6 170673105 170673484 -18606070 + THE1C LTR MaLR 1 375 0 701 282 109 42 chr6 170673484 170673698 -18605856 + HERV16 LTR ERVL 1794 2039 -2957 1851 314 86 23 chr6 170674059 170675013 -18604541 + ERVL LTR ERVL 4145 5158 -606 738 299 67 64 chr6 170675323 170675774 -18603780 + LTR16A1 LTR ERVL 6 457 0 2166 133 0 0 chr6 170676150 170676452 -18603102 - AluSx SINE Alu -10 302 1 6054 219 33 42 chr6 170676576 170677794 -18601760 - L1M4 LINE L1 -1159 4987 3790 2398 93 0 3 chr6 170677794 170678105 -18601449 - AluSq SINE Alu -3 310 1 6054 219 33 42 chr6 170678105 170678736 -18600818 - L1M4 LINE L1 -2356 3790 3155 313 256 13 26 chr6 170678750 170678828 -18600726 - L1MDa LINE L1 -6460 80 4 735 153 0 36 chr6 170678855 170678992 -18600562 - MSTC LTR MaLR -296 132 1 206 349 51 23 chr6 170679196 170679371 -18600183 - L2 LINE L2 -218 3054 2875 3555 188 61 14 chr6 170679730 170680431 -18599123 - MER50 LTR ERV1 0 734 1 528 146 31 10 chr6 170680655 170680751 -18598803 + MER4A LTR ERV1 1 98 -566 1770 151 6 25 chr6 170680751 170681101 -18598453 + MER4A LTR ERV1 263 664 0 2318 99 3 0 chr6 170681940 170682242 -18597312 + AluSx SINE Alu 1 303 -9 4519 132 29 13 chr6 170683331 170684011 -18595543 - LTR8 LTR ERV1 0 691 1 350 279 7 66 chr6 170684086 170684222 -18595332 - MER5B DNA MER1_type -21 157 30 234 290 253 6 chr6 170684328 170684490 -18595064 - MIR SINE MIR -50 212 11 198 355 66 0 chr6 170684520 170684596 -18594958 + L2 LINE L2 3147 3227 -45 28 48 0 0 chr6 170685069 170685111 -18594443 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr6 170685160 170685188 -18594366 + AT_rich Low_complexity Low_complexity 1 28 0 353 274 103 29 chr6 170685437 170685612 -18593942 + MIR SINE MIR 75 262 0 317 159 0 0 chr6 170687029 170687092 -18592462 + (TA)n Simple_repeat Simple_repeat 2 64 0 2172 113 0 3 chr6 170687092 170687383 -18592171 - AluSx SINE Alu -22 290 1 210 385 10 0 chr6 170688424 170688528 -18591026 + L2 LINE L2 2690 2794 -520 766 265 110 7 chr6 170688646 170688937 -18590617 + L1ME LINE L1 4591 4911 -1235 584 259 193 27 chr6 170688945 170689199 -18590355 + L1ME LINE L1 5526 5824 -297 182 337 11 34 chr6 170689228 170689317 -18590237 - L2 LINE L2 -556 2758 2672 2587 68 0 0 chr6 170689422 170689730 -18589824 - AluY SINE Alu -3 308 1 22 0 0 0 chr6 170690334 170690356 -18589198 + AT_rich Low_complexity Low_complexity 1 22 0 2410 83 7 0 chr6 170692102 170692404 -18587150 + AluY SINE Alu 1 304 -7 306 0 0 0 chr6 170692683 170692717 -18586837 + (TG)n Simple_repeat Simple_repeat 1 34 0 3745 62 47 41 chr6 170693071 170693558 -18585996 + LTR2B LTR ERV1 1 490 0 2182 97 10 0 chr6 170695449 170695739 -18583815 - AluSg SINE Alu -16 294 2 2914 10 0 0 chr6 170696468 170696779 -18582775 + AluYa5 SINE Alu 1 311 0 4019 95 7 0 chr6 170698513 170699051 -18580503 + MER41B LTR ERV1 1 542 -93 387 143 52 26 chr6 170699190 170699267 -18580287 + LTR25 LTR ERV1 255 333 -461 1210 113 16 16 chr6 170699452 170699638 -18579916 + MER61E LTR ERV1 341 526 -43 540 71 155 0 chr6 170699660 170699744 -18579810 + MER41A LTR ERV1 458 554 0 22 0 0 0 chr6 170704598 170704620 -18574934 + AT_rich Low_complexity Low_complexity 1 22 0 276 30 0 0 chr6 170704678 170704711 -18574843 + (CA)n Simple_repeat Simple_repeat 1 33 0 591 258 106 25 chr6 170704972 170705223 -18574331 + LTR40a LTR ERVL 151 480 -39 2095 145 7 0 chr6 170705955 170706265 -18573289 - AluSx SINE Alu 0 312 1 2062 135 0 0 chr6 170707018 170707307 -18572247 - AluJb SINE Alu -18 294 6 747 337 106 64 chr6 170707444 170708629 -18570925 + HERVL40 LTR ERVL 1431 2665 -2865 1394 259 96 58 chr6 170708638 170709209 -18570345 + HERVL40 LTR ERVL 4582 5174 -356 312 178 82 14 chr6 170709402 170709475 -18570079 + HERVL40 LTR ERVL 5175 5252 -278 826 278 40 12 chr6 170709579 170709831 -18569723 + HERVL40 LTR ERVL 5247 5505 -25 638 315 72 10 chr6 170710033 170710325 -18569229 + LTR40b LTR ERVL 151 460 -2 2305 60 4 0 chr6 170710505 170710817 -18568737 + AluY SINE Alu 1 313 0 218 333 56 11 chr6 170710989 170711079 -18568475 - MIR3 SINE MIR -24 184 91 2513 65 3 0 chr6 170711653 170711963 -18567591 - AluY SINE Alu 0 311 1 182 400 0 13 chr6 170712063 170712138 -18567416 - MIR SINE MIR -115 93 20 369 0 0 0 chr6 170712736 170712777 -18566777 + (CA)n Simple_repeat Simple_repeat 2 42 0 303 28 0 0 chr6 170712776 170712812 -18566742 + (GA)n Simple_repeat Simple_repeat 2 37 0 * 562 325 262 27 chr6 170713082 170713141 -18566413 - L3 LINE CR1 -115 1462 1418 362 211 0 0 chr6 170713141 170713217 -18566337 + L1MA10 LINE L1 6253 6328 -6 562 325 262 27 chr6 170713217 170713668 -18565886 - L3 LINE CR1 -159 1418 832 4246 141 65 3 chr6 170713810 170714579 -18564975 + MER41A-int LTR ERV1 226 946 -5000 333 0 0 0 chr6 170714579 170714616 -18564938 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 4246 141 65 3 chr6 170714616 170715329 -18564225 + MER41A-int LTR ERV1 946 2014 -3932 336 109 55 0 chr6 170715325 170715380 -18564174 + MER41A-int LTR ERV1 2163 2220 -3726 * 14250 158 72 33 chr6 170715361 170718535 -18561019 + MER41A-int LTR ERV1 2648 5942 -4 3544 80 9 0 chr6 170718537 170719000 -18560554 + MER41A LTR ERV1 1 467 -87 342 360 113 14 chr6 170719013 170719305 -18560249 - L3 LINE CR1 -1046 531 211 194 254 36 18 chr6 170719696 170719751 -18559803 + MIR SINE MIR 18 73 -135 600 163 248 13 chr6 170719865 170720018 -18559536 + MER20 DNA MER1_type 31 219 0 367 287 20 20 chr6 170720180 170720330 -18559224 - MIR SINE MIR -53 209 60 1483 196 4 0 chr6 170720357 170720628 -18558926 + AluJb SINE Alu 28 299 -13 21 0 0 0 chr6 170720697 170720718 -18558836 + AT_rich Low_complexity Low_complexity 1 21 0 210 379 0 23 chr6 170720859 170720946 -18558608 + MIR3 SINE MIR 108 192 -16 242 125 21 0 chr6 170721605 170721653 -18557901 + (TA)n Simple_repeat Simple_repeat 1 49 0 28 71 0 0 chr6 170721665 170721721 -18557833 + AT_rich Low_complexity Low_complexity 1 56 0 251 187 0 52 chr6 170722291 170722638 -18556916 + (TATAA)n Simple_repeat Simple_repeat 1 328 0 460 168 23 25 chr6 170722641 170723006 -18556548 + (ATATG)n Simple_repeat Simple_repeat 1 364 0 326 154 0 15 chr6 170723146 170723211 -18556343 + (TA)n Simple_repeat Simple_repeat 2 65 0 859 127 27 14 chr6 170723291 170723501 -18556053 + CT-rich Low_complexity Low_complexity 1 212 0 293 122 0 0 chr6 170723502 170723543 -18556011 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 1521 198 3 21 chr6 170723543 170723826 -18555728 - AluJb SINE Alu -32 280 3 32 26 0 0 chr6 170724715 170724754 -18554800 + AT_rich Low_complexity Low_complexity 1 39 0 828 154 0 0 chr6 170724754 170724877 -18554677 - FLAM_C SINE Alu -20 123 1 283 226 108 39 chr6 170724877 170724979 -18554575 + MIR SINE MIR 65 173 -89 258 32 0 0 chr6 170725209 170725240 -18554314 + (CA)n Simple_repeat Simple_repeat 1 31 0 260 264 36 93 chr6 170726026 170726166 -18553388 + MIR3 SINE MIR 4 135 -73 436 279 0 38 chr6 170826307 170826490 -18453064 + G-rich Low_complexity Low_complexity 2 177 0 207 338 137 23 chr6 170827516 170827735 -18451819 + L2 LINE L2 2920 3163 -109 312 236 109 9 chr6 170828270 170828380 -18451174 - MIR3 SINE MIR -7 201 81 352 286 68 23 chr6 170828555 170828688 -18450866 + MIR SINE MIR 5 143 -119 261 299 0 13 chr6 170829180 170829257 -18450297 + LTR67 LTR ERVL 428 503 -54 316 250 88 37 chr6 170829578 170829714 -18449840 + MLT1L LTR MaLR 466 608 -7 2204 120 0 3 chr6 170830608 170830908 -18448646 - AluSx SINE Alu -13 299 1 2191 113 0 22 chr6 170831833 170832152 -18447402 - AluSx SINE Alu 0 312 1 223 265 0 29 chr6 170832544 170832623 -18446931 + CT-rich Low_complexity Low_complexity 4 132 0 350 267 23 0 chr6 170833322 170833408 -18446146 + HsTC2 DNA Tc2 1 88 -1810 2430 75 0 3 chr6 170833605 170833899 -18445655 + AluSg SINE Alu 1 293 -17 646 319 70 4 chr6 170834033 170834262 -18445292 - MIR SINE MIR 0 262 19 709 309 26 7 chr6 170834573 170834845 -18444709 + MARNA DNA Mariner 262 538 -48 1798 124 0 118 chr6 170835281 170835627 -18443927 - AluY SINE Alu -3 308 4 188 167 0 56 chr6 170835994 170836030 -18443524 - L2 LINE L2 -15 3298 3265 489 273 209 9 chr6 170836285 170836629 -18442925 - LTR16A1 LTR ERVL -44 413 1 481 285 19 56 chr6 170837653 170837727 -18441827 - MIR SINE MIR -11 251 176 2350 154 64 15 chr6 170837727 170838135 -18441419 - MSTA LTR MaLR 0 428 1 481 285 19 56 chr6 170838135 170838169 -18441385 - MIR SINE MIR -86 176 142 2235 122 3 0 chr6 170838169 170838480 -18441074 + AluSx SINE Alu 1 312 0 481 285 19 56 chr6 170838480 170838616 -18440938 - MIR SINE MIR -120 142 22 2642 108 8 30 chr6 170839081 170839453 -18440101 + THE1B LTR MaLR 1 364 0 1846 150 35 3 chr6 170841215 170841502 -18438052 - AluSx SINE Alu -8 304 9 181 259 49 37 chr6 170841666 170841747 -18437807 + MIR3 SINE MIR 97 178 -30 2245 112 0 3 chr6 170842152 170842448 -18437106 + AluSx SINE Alu 1 295 -17 716 215 147 5 chr6 170842883 170842981 -18436573 - L1MA9 LINE L1 -38 6274 6191 351 0 0 0 chr6 170842981 170843020 -18436534 + (TG)n Simple_repeat Simple_repeat 2 40 0 716 215 147 5 chr6 170843020 170843112 -18436442 - L1MA9 LINE L1 -121 6191 6057 1702 151 22 35 chr6 170843232 170843551 -18436003 + L1MA9 LINE L1 5998 6312 0 874 293 80 61 chr6 170843591 170844232 -18435322 + L1MC4a LINE L1 5220 5224 -922 1887 157 14 0 chr6 170844232 170844526 -18435028 + AluJb SINE Alu 1 298 -14 874 293 80 61 chr6 170844526 170844704 -18434850 + L1MC4a LINE L1 5224 5397 -749 2023 156 0 7 chr6 170844874 170845182 -18434372 - AluJb SINE Alu -6 306 1 2211 119 3 3 chr6 170845333 170845643 -18433911 - AluSq SINE Alu -3 310 1 1859 154 19 19 chr6 170845649 170845961 -18433593 - AluJo SINE Alu 0 312 1 2021 148 0 16 chr6 170847041 170847358 -18432196 - AluSx SINE Alu 0 312 1 869 113 8 23 chr6 170847749 170847882 -18431672 + MLT1A1 LTR MaLR 19 149 -216 258 303 26 13 chr6 170848400 170848476 -18431078 + L2 LINE L2 3233 3309 -4 885 173 36 24 chr6 170848886 170849054 -18430500 - MLT1A1 LTR MaLR 0 365 196 2229 113 0 0 chr6 170849057 170849358 -18430196 + AluSx SINE Alu 4 304 -8 1013 141 0 0 chr6 170849358 170849514 -18430040 + AluSg/x SINE Alu 134 289 -23 777 163 13 146 chr6 170849524 170849585 -18429969 - MLT1A1 LTR MaLR -155 210 142 2003 95 0 4 chr6 170849585 170849848 -18429706 - AluSq SINE Alu -10 303 42 777 163 13 146 chr6 170849848 170850025 -18429529 - MLT1A1 LTR MaLR -223 142 4 607 266 17 11 chr6 170850193 170850370 -18429184 - L1ME3 LINE L1 0 6162 5985 268 146 135 34 chr6 170850394 170850483 -18429071 + L1ME4a LINE L1 6022 6119 -2 1462 130 136 45 chr6 170850584 170850685 -18428869 + MLT1A1 LTR MaLR 6 96 -269 2257 103 0 0 chr6 170850685 170850977 -18428577 + AluSx SINE Alu 1 292 -20 1462 130 136 45 chr6 170850977 170851205 -18428349 + MLT1A1 LTR MaLR 96 365 0 1870 176 0 0 chr6 170851852 170852153 -18427401 + AluJo SINE Alu 12 312 0 2419 67 7 0 chr6 170852280 170852579 -18426975 + AluY SINE Alu 3 303 -8 284 295 19 48 chr6 170852889 170853096 -18426458 - L1M4 LINE L1 -1381 4765 4565 181 0 0 0 chr6 170853282 170853302 -18426252 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1815 151 3 21 chr6 170853302 170853593 -18425961 - AluJo SINE Alu -26 286 1 931 273 144 21 chr6 170853786 170854215 -18425339 - L2 LINE L2 -1704 1610 1129 848 182 51 84 chr6 170854223 170854393 -18425161 + MLT1B LTR MaLR 1 164 -226 2230 123 10 0 chr6 170854393 170854702 -18424852 + AluSx SINE Alu 1 312 0 848 182 51 84 chr6 170854702 170854745 -18424809 + MLT1B LTR MaLR 164 207 -183 1425 86 25 0 chr6 170855233 170855430 -18424124 + L1MA4 LINE L1 6081 6282 -18 485 314 106 31 chr6 170855434 170855727 -18423827 + HAL1 LINE L1 819 1133 -1374 423 278 142 37 chr6 170855733 170855895 -18423659 - MER5A DNA MER1_type 0 189 11 699 263 79 49 chr6 170855911 170856318 -18423236 + HAL1 LINE L1 1156 1574 -933 2007 109 3 40 chr6 170856620 170856942 -18422612 + AluSg SINE Alu 1 310 0 325 250 173 39 chr6 170856942 170857150 -18422404 - L1M4 LINE L1 -3458 2688 2453 2095 120 0 32 chr6 170857238 170857547 -18422007 + AluSx SINE Alu 1 299 -13 2020 93 59 0 chr6 170858016 170858286 -18421268 - AluSx SINE Alu 0 312 27 506 333 29 35 chr6 170858380 170858692 -18420862 - HAL1 LINE L1 -790 1717 1408 183 229 25 0 chr6 170858781 170858899 -18420655 + (TA)n Simple_repeat Simple_repeat 2 122 0 1402 213 44 0 chr6 170858899 170859172 -18420382 - AluJo SINE Alu -26 286 2 466 248 76 0 chr6 170859321 170859426 -18420128 - MER81 DNA DNA 0 114 2 2454 87 0 0 chr6 170859768 170860067 -18419487 + AluSg SINE Alu 1 299 -11 1708 176 57 3 chr6 170860212 170860508 -18419046 - AluJb SINE Alu 0 312 1 1578 194 0 17 chr6 170861093 170861387 -18418167 - AluJo SINE Alu -18 294 6 24 32 0 0 chr6 170861716 170861747 -18417807 + AT_rich Low_complexity Low_complexity 1 31 0 2219 127 0 9 chr6 170861804 170862119 -18417435 - AluSx SINE Alu 0 312 1 1515 140 118 11 chr6 170862238 170862509 -18417045 - AluSg1 SINE Alu -9 300 1 1475 97 5 0 chr6 170862590 170862785 -18416769 - AluSq SINE Alu -117 196 1 299 317 21 28 chr6 170862840 170862982 -18416572 + MIR SINE MIR 11 151 -111 1286 147 210 20 chr6 170862982 170863234 -18416320 + AluYa8 SINE Alu 1 300 0 896 181 0 0 chr6 170863234 170863372 -18416182 + AluJo/FRAM SINE Alu 131 268 -44 290 105 0 35 chr6 170863931 170863988 -18415566 - Alu SINE Alu 0 302 248 2082 121 7 10 chr6 170864129 170864426 -18415128 - AluSx SINE Alu -16 296 1 21 0 0 0 chr6 170864608 170864629 -18414925 + AT_rich Low_complexity Low_complexity 1 21 0 523 182 42 195 chr6 170864834 170865010 -18414544 - MER102b DNA MER1_type -1089 339 230 1734 123 7 63 chr6 170865010 170865159 -18414395 + AluSq SINE Alu 1 126 -187 2328 79 7 7 chr6 170865159 170865451 -18414103 + AluSg SINE Alu 1 292 -18 1734 123 7 63 chr6 170865451 170865602 -18413952 + AluSq SINE Alu 126 284 -29 523 182 42 195 chr6 170865602 170865738 -18413816 - MER102b DNA MER1_type -1198 230 75 2409 80 7 0 chr6 170865895 170866196 -18413358 - AluSp SINE Alu -10 303 1 360 0 0 0 chr6 170866618 170866658 -18412896 + (TG)n Simple_repeat Simple_repeat 2 41 0 2110 120 0 0 chr6 170866659 170866965 -18412589 - AluSx SINE Alu 0 306 1 246 116 0 0 chr6 170867297 170867340 -18412214 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 207 261 72 0 chr6 170867742 170867811 -18411743 + MER5A DNA MER1_type 59 132 -57 2645 30 0 0 chr6 170868443 170868738 -18410816 + AluY SINE Alu 1 295 -16 548 30 0 0 chr6 170869154 170869221 -18410333 - SVA Other Other -4 1382 1316 379 141 0 16 chr6 170869322 170869386 -18410168 - AluSp SINE Alu -115 188 126 273 259 61 53 chr6 170869719 170869850 -18409704 + MARNA DNA Mariner 196 327 -259 1063 209 43 4 chr6 170869865 170870100 -18409454 + Charlie1 DNA MER1_type 1 244 -2517 419 244 43 0 chr6 170870079 170870194 -18409360 + Charlie1 DNA MER1_type 2620 2739 -22 * 201 39 0 0 chr6 170870391 170870417 -18409137 + (T)n Simple_repeat Simple_repeat 1 26 0 337 223 83 33 chr6 170870697 170870818 -18408736 + L2 LINE L2 3184 3310 -3 454 272 25 31 chr6 170870987 170871149 -18408405 + MARNA DNA Mariner 254 414 -172 277 305 126 48 chr6 170871163 170871330 -18408224 - L2 LINE L2 -3 3269 3090 356 340 6 13 chr6 170871602 170871758 -18407796 - MARNA DNA Mariner -408 178 24 584 183 0 24 chr6 170871864 170871990 -18407564 - L2 LINE L2 -1 3312 3190 1839 149 0 4 chr6 170872248 170872516 -18407038 + AluSx SINE Alu 1 267 -45 3865 146 68 8 chr6 170872543 170873249 -18406305 - L1MC3 LINE L1 -6 7779 7032 427 315 61 17 chr6 170873370 170873551 -18406003 + MIR3 SINE MIR 18 206 -2 207 354 80 26 chr6 170875447 170875560 -18403994 - MIR SINE MIR -74 134 16 297 128 0 0 chr6 170876250 170876297 -18403257 + (A)n Simple_repeat Simple_repeat 1 47 0 1166 283 46 3 chr6 170876399 170876745 -18402809 - LTR40c LTR ERVL -7 458 98 1947 119 0 28 chr6 170876761 170877076 -18402478 + AluSx SINE Alu 6 312 0 553 193 175 42 chr6 170877110 170877276 -18402278 - HERVL40 LTR ERVL -2650 2880 2693 821 263 37 8 chr6 170877376 170877619 -18401935 - HERVL40 LTR ERVL -3913 1617 1368 583 279 85 12 chr6 170877938 170878196 -18401358 - HERVL40 LTR ERVL -4335 1195 919 281 240 94 10 chr6 170878375 170878471 -18401083 - HERVL40 LTR ERVL -5423 107 4 181 191 24 24 chr6 170879463 170879505 -18400049 - MER5C DNA MER1_type -262 62 21 475 331 21 0 chr6 170879814 170879959 -18399595 + MIR SINE MIR 48 195 -67 191 267 30 139 chr6 170880076 170880154 -18399400 + L2 LINE L2 3167 3219 -94 1736 149 3 41 chr6 170880154 170880449 -18399105 - AluJb SINE Alu -28 284 1 191 267 30 139 chr6 170880449 170880535 -18399019 + L2 LINE L2 3219 3313 0 2285 101 3 0 chr6 170880596 170880893 -18398661 - AluSx SINE Alu -14 298 1 234 254 0 0 chr6 170880967 170881034 -18398520 + (TG)n Simple_repeat Simple_repeat 1 67 0 311 264 35 0 chr6 170881652 170881739 -18397815 - L2 LINE L2 -5 3308 3219 393 315 0 63 chr6 170881764 170881907 -18397647 - L2 LINE L2 -21 3251 3118 2295 118 0 0 chr6 170881913 170882217 -18397337 + AluSx SINE Alu 1 304 -8 30 59 0 0 chr6 170882948 170882999 -18396555 + AT_rich Low_complexity Low_complexity 1 51 0 565 273 32 50 chr6 170884169 170884349 -18395205 - MER115 DNA AcHobo -447 246 69 1877 185 128 0 chr6 170884349 170884732 -18394822 - MSTB1 LTR MaLR 0 432 1 565 273 32 50 chr6 170884732 170884771 -18394783 - MER115 DNA AcHobo -624 69 31 271 222 0 154 chr6 170885024 170885141 -18394413 + LTR67 LTR ERVL 44 142 -415 298 263 95 58 chr6 170885749 170885886 -18393668 - MIR3 SINE MIR -13 195 54 21 36 0 0 chr6 170886310 170886338 -18393216 + AT_rich Low_complexity Low_complexity 1 28 0 557 245 25 23 chr6 170886538 170886722 -18392832 + L1MA10 LINE L1 5991 6333 -1 1798 146 14 7 chr6 170886730 170887010 -18392544 + AluJo SINE Alu 1 282 -30 1045 152 12 18 chr6 170887232 170887397 -18392157 - AluSg/x SINE Alu -15 297 134 1719 119 63 14 chr6 170887397 170887683 -18391871 - AluSx SINE Alu -12 300 1 1593 108 4 22 chr6 170887713 170887945 -18391609 - AluSx SINE Alu -84 228 1 21 36 0 0 chr6 170888122 170888150 -18391404 + AT_rich Low_complexity Low_complexity 1 28 0 248 289 91 102 chr6 170889357 170889544 -18390010 + L2 LINE L2 2943 3127 -145 1903 154 0 3 chr6 170889613 170889906 -18389648 - AluJb SINE Alu -20 292 1 21 36 0 0 chr6 170889952 170889980 -18389574 + AT_rich Low_complexity Low_complexity 1 28 0 1674 137 0 0 chr6 170889990 170890224 -18389330 - AluJb SINE Alu -78 234 1 326 238 16 0 chr6 170890437 170890500 -18389054 + L2 LINE L2 3231 3294 -19 2337 100 0 3 chr6 170892090 170892399 -18387155 - AluSg SINE Alu -2 308 1 40 37 0 0 chr6 170893621 170893675 -18385879 + AT_rich Low_complexity Low_complexity 1 54 0 2405 73 0 0 chr6 170893997 170894286 -18385268 - AluY SINE Alu -22 289 1 281 200 70 80 chr6 170894417 170894517 -18385037 + MIR3 SINE MIR 71 169 -39 22 56 0 0 chr6 170894960 170894996 -18384558 + AT_rich Low_complexity Low_complexity 1 36 0 14341 156 28 19 chr6 170895021 170898011 -18381543 + L1M4c LINE L1 22 3039 -3343 442 327 143 42 chr6 170898263 170898599 -18380955 + L3 LINE CR1 676 1045 -532 449 248 62 6 chr6 170898814 170898975 -18380579 - MER20B DNA MER1_type -1 782 613 2146 238 93 50 chr6 170899176 170899490 -18380064 - L1MEc LINE L1 -3405 2810 2511 2258 106 0 6 chr6 170899490 170899801 -18379753 + AluSx SINE Alu 1 309 -3 2146 238 93 50 chr6 170899801 170901049 -18378505 - L1MEc LINE L1 -3704 2511 1038 1212 243 65 63 chr6 170901047 170901446 -18378108 - L1MEc LINE L1 -5962 434 35 * 1272 188 54 4 chr6 170901475 170901751 -18377803 - MER20B DNA MER1_type -277 506 217 359 158 134 126 chr6 170902096 170902223 -18377331 - L2 LINE L2 -4 3309 3182 357 316 19 39 chr6 170902841 170902996 -18376558 + MIR SINE MIR 34 185 -77 491 325 89 5 chr6 170904054 170904245 -18375309 - MIR SINE MIR -54 208 2 2324 102 7 0 chr6 170904372 170904677 -18374877 - AluSp SINE Alu -6 307 1 553 261 88 74 chr6 170905907 170906356 -18373198 + L2 LINE L2 2841 3298 -15 2056 138 0 25 chr6 170907023 170907343 -18372211 - AluSx SINE Alu 0 312 1 814 183 0 21 chr6 170907347 170907489 -18372065 - FLAM_C SINE Alu -3 140 2 220 261 9 27 chr6 170907530 170907641 -18371913 + L3 LINE CR1 739 847 -730 880 240 31 0 chr6 170907885 170908077 -18371477 + MER63A DNA MER1_type 5 202 -8 2194 120 0 3 chr6 170908220 170908529 -18371025 + AluSg SINE Alu 1 308 -2 2033 135 4 0 chr6 170909710 170910026 -18369528 + AluSx SINE Alu 1 317 0 366 292 36 36 chr6 170910028 170910196 -18369358 - MIR SINE MIR -25 237 70 387 75 0 0 chr6 170910455 170910508 -18369046 - MADE1 DNA Mariner 0 80 28 439 38 0 0 chr6 170910584 170910637 -18368917 - MADE1 DNA Mariner -27 53 1 2207 127 3 0 chr6 170910659 170910967 -18368587 - AluSx SINE Alu -3 309 1 378 0 0 0 chr6 170911705 170911747 -18367807 + (TG)n Simple_repeat Simple_repeat 1 42 0 189 258 89 65 chr6 170912077 170912201 -18367353 - MIR SINE MIR -63 145 19 727 149 92 7 chr6 170913158 170913299 -18366255 - L1MB8 LINE L1 -7 6171 6019 2362 110 0 3 chr6 170913319 170913628 -18365926 - AluSx SINE Alu -4 308 1 822 262 70 4 chr6 170913653 170913731 -18365823 - Ricksha DNA DNA -2813 433 341 13242 153 32 24 chr6 170913731 170915103 -18364451 - ERVL-B1 LTR ERVL 0 5764 4365 756 159 0 51 chr6 170915103 170915241 -18364313 + FLAM_C SINE Alu 3 133 0 13242 153 32 24 chr6 170915241 170916131 -18363423 - ERVL-B1 LTR ERVL -1399 4365 3484 707 162 0 0 chr6 170916142 170916253 -18363301 - ERVL-B1 LTR ERVL -3146 2618 2508 3771 169 14 67 chr6 170916257 170917019 -18362535 - ERVL-B1 LTR ERVL -2292 3472 2751 1388 250 31 19 chr6 170917022 170917382 -18362172 + MLT1A2 LTR MaLR 11 374 0 13890 183 54 18 chr6 170917382 170918265 -18361289 - ERVL-B1 LTR ERVL -3009 2755 1906 2020 142 0 17 chr6 170918265 170918567 -18360987 + AluJo SINE Alu 1 297 -15 13890 183 54 18 chr6 170918567 170920340 -18359214 - ERVL-B1 LTR ERVL -3858 1906 2 1592 212 50 92 chr6 170920341 170920883 -18358671 - MLT2B1 LTR ERVL 0 520 2 870 227 146 80 chr6 170920883 170921375 -18358179 + HAL1 LINE L1 742 1281 -1226 1802 138 66 0 chr6 170921375 170921664 -18357890 + AluSx SINE Alu 1 308 -4 870 227 146 80 chr6 170921664 170921761 -18357793 + HAL1 LINE L1 1281 1370 -1137 411 119 0 0 chr6 170921951 170922018 -18357536 + (GA)n Simple_repeat Simple_repeat 2 68 0 181 254 8 95 chr6 170922481 170922607 -18356947 - L2 LINE L2 -195 3077 2963 519 194 78 171 chr6 170923233 170923262 -18356292 - L1MA9 LINE L1 -38 6274 6244 2237 110 3 7 chr6 170923262 170923561 -18355993 - AluSx SINE Alu -14 298 1 519 194 78 171 chr6 170923561 170923801 -18355753 - L1MA9 LINE L1 -68 6244 6041 2300 96 0 13 chr6 170923801 170924102 -18355452 - AluSx SINE Alu -15 297 1 519 194 78 171 chr6 170924102 170924177 -18355377 - L1MA9 LINE L1 -271 6041 5961 1807 167 13 16 chr6 170924216 170924528 -18355026 - AluJo SINE Alu -1 311 1 2632 61 0 0 chr6 170924746 170925056 -18354498 - AluY SINE Alu -1 310 1 25 0 0 0 chr6 170925166 170925191 -18354363 + AT_rich Low_complexity Low_complexity 1 25 0 3610 96 25 0 chr6 170925191 170925704 -18353850 - L1PA10 LINE L1 -4 6164 5639 640 138 8 65 chr6 170925855 170925978 -18353576 + AluJb SINE Alu 2 117 -195 207 0 0 0 chr6 170925983 170926006 -18353548 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 323 297 68 48 chr6 170927377 170927559 -18351995 + MIR SINE MIR 33 220 -42 1439 212 13 73 chr6 170927559 170927915 -18351639 - MLT1A2 LTR MaLR -1 373 42 2223 109 0 0 chr6 170927915 170928208 -18351346 - AluSx SINE Alu -19 293 1 1439 212 13 73 chr6 170928208 170928248 -18351306 - MLT1A2 LTR MaLR -332 42 1 323 297 68 48 chr6 170928248 170928292 -18351262 + MIR SINE MIR 220 262 0 209 222 19 19 chr6 170928290 170928344 -18351210 + MIR3 SINE MIR 130 183 -25 * 189 304 51 51 chr6 170928494 170928652 -18350902 + L2 LINE L2 2492 2649 -665 181 264 19 0 chr6 170928833 170928886 -18350668 + L2 LINE L2 2662 2715 -599 2374 87 0 0 chr6 170929161 170929460 -18350094 + AluSg SINE Alu 1 299 -11 847 147 0 14 chr6 170929470 170929613 -18349941 + FRAM SINE Alu 35 175 -1 2261 113 0 6 chr6 170930192 170930503 -18349051 + AluSx SINE Alu 3 311 -1 250 305 54 54 chr6 170930932 170931135 -18348419 - L2 LINE L2 -928 2386 2184 2403 113 0 0 chr6 170931269 170931579 -18347975 - AluSx SINE Alu 0 312 3 275 286 45 40 chr6 170932380 170932579 -18346975 - L2 LINE L2 -626 2688 2489 387 0 0 0 chr6 170932682 170932725 -18346829 + (TG)n Simple_repeat Simple_repeat 2 44 0 1254 143 14 45 chr6 170932747 170932970 -18346584 + AluJo SINE Alu 87 302 -10 1642 195 0 20 chr6 170933791 170934083 -18345471 + AluJo SINE Alu 1 286 -26 2393 64 0 0 chr6 170934093 170934410 -18345144 + AluY SINE Alu 1 317 0 907 145 0 14 chr6 170934739 170934884 -18344670 + FLAM_C SINE Alu 1 143 0 2270 105 0 3 chr6 170935133 170935438 -18344116 + AluSc SINE Alu 1 304 -5 2463 43 14 0 chr6 170936031 170936311 -18343243 + AluSp SINE Alu 22 305 -8 191 302 0 0 chr6 170937045 170937088 -18342466 + MIR SINE MIR 36 78 -130 582 204 99 23 chr6 170937159 170937331 -18342223 - MER5A DNA MER1_type 0 189 5 2341 90 3 3 chr6 170937462 170937761 -18341793 - AluSx SINE Alu -13 299 1 723 209 39 28 chr6 170939430 170939620 -18339934 + L1M4 LINE L1 5459 5639 -529 259 336 49 25 chr6 170939664 170939786 -18339768 + L2 LINE L2 3148 3272 0 2230 104 0 0 chr6 170939831 170940129 -18339425 + AluSx SINE Alu 1 298 -14 425 281 37 7 chr6 170940129 170940264 -18339290 + MIR SINE MIR 22 160 -102 2041 101 3 21 chr6 170940971 170941285 -18338269 + AluSg SINE Alu 1 309 0 2033 129 0 40 chr6 170941755 170942080 -18337474 - AluSx SINE Alu 0 312 1 288 91 0 0 chr6 170942198 170942242 -18337312 + (TA)n Simple_repeat Simple_repeat 2 45 0 186 43 0 0 chr6 170944455 170944478 -18335076 + (CA)n Simple_repeat Simple_repeat 2 24 0 355 312 51 0 chr6 170945210 170945348 -18334206 - MIR SINE MIR -71 191 47 24 53 0 0 chr6 170945907 170945945 -18333609 + AT_rich Low_complexity Low_complexity 1 38 0 2230 170 82 40 chr6 170946145 170946646 -18332908 - Charlie1b DNA MER1_type 0 523 2 538 204 51 0 chr6 170946871 170946969 -18332585 - MER20B DNA MER1_type -116 103 1 1830 168 0 14 chr6 170947122 170947419 -18332135 + AluJb SINE Alu 1 293 -19 1978 127 57 0 chr6 170947524 170947807 -18331747 + AluJb SINE Alu 2 300 -12 457 310 13 9 chr6 170947922 170948098 -18331456 + MIR SINE MIR 16 189 -64 2240 120 3 0 chr6 170948534 170948868 -18330686 - L1P LINE L1 -1024 5122 4788 2101 141 7 0 chr6 170949409 170949714 -18329840 + AluSx SINE Alu 1 307 -5 941 227 39 5 chr6 170950106 170950309 -18329245 - MER20 DNA MER1_type -9 210 1 23 68 0 0 chr6 170950385 170950429 -18329125 + AT_rich Low_complexity Low_complexity 1 44 0 2348 111 0 0 chr6 170950566 170950872 -18328682 - AluSx SINE Alu -6 306 1 190 355 74 8 chr6 170950874 170950995 -18328559 + L2 LINE L2 3184 3312 -1 1096 435 0 23 chr6 170951131 170951432 -18328122 - AluJo SINE Alu -9 303 10 1963 175 72 25 chr6 170951491 170951936 -18327618 - MLT1C LTR MaLR -1 466 1 2289 83 7 0 chr6 170951956 170952245 -18327309 - AluY SINE Alu -20 291 1 647 38 0 13 chr6 170952245 170952324 -18327230 - AluY SINE Alu -177 134 57 1446 94 0 5 chr6 170952324 170952515 -18327039 - AluY SINE Alu -121 190 1 1921 204 74 32 chr6 170952897 170953298 -18326256 + MLT2B1 LTR ERVL 1 425 -95 2603 111 14 0 chr6 170953298 170953668 -18325886 + THE1C LTR MaLR 1 375 0 1921 204 74 32 chr6 170953668 170953727 -18325827 + MLT2B1 LTR ERVL 425 480 -40 265 133 0 0 chr6 170953778 170953823 -18325731 + MLT2B1 LTR ERVL 476 520 0 411 305 102 0 chr6 170953899 170954066 -18325488 + MIR SINE MIR 7 190 -72 942 218 50 82 chr6 170954078 170954481 -18325073 + L1MC5 LINE L1 6850 7239 -722 1809 158 17 83 chr6 170954570 170954852 -18324702 - MLT1B LTR MaLR -7 383 84 1922 128 51 14 chr6 170954852 170955148 -18324406 - AluJb SINE Alu -1 311 5 1998 151 0 13 chr6 170955156 170955461 -18324093 - AluJo SINE Alu -11 301 1 1809 158 17 83 chr6 170955461 170955579 -18323975 - MLT1B LTR MaLR -313 77 1 478 252 122 0 chr6 170955581 170955696 -18323858 - MER115 DNA AcHobo -495 198 70 807 261 118 5 chr6 170955787 170955998 -18323556 + LTR16C LTR ERVL 35 269 -222 260 232 18 0 chr6 170956122 170956178 -18323376 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 241 291 47 0 chr6 170956182 170956268 -18323286 - L1MC4 LINE L1 -1339 6703 6614 250 251 26 0 chr6 170956306 170956402 -18323152 - L1MC4 LINE L1 -1139 6703 6571 227 105 0 0 chr6 170956404 170956442 -18323112 + LTR66 LTR ERVL 404 441 -169 243 170 0 0 chr6 170956442 170956489 -18323065 + (TA)n Simple_repeat Simple_repeat 1 47 0 276 261 0 22 chr6 170956490 170956582 -18322972 - L1MC4 LINE L1 -1339 6703 6614 238 289 22 0 chr6 170956584 170956674 -18322880 + L1MC4 LINE L1 6614 6705 -1337 * 268 271 47 0 chr6 170956613 170956698 -18322856 - L1MC4 LINE L1 -1340 6702 6614 206 277 0 0 chr6 170956699 170956746 -18322808 + (TA)n Simple_repeat Simple_repeat 2 48 0 265 192 0 135 chr6 170956746 170956850 -18322704 - L1MC4 LINE L1 -1339 6703 6614 256 306 0 0 chr6 170956825 170956910 -18322644 + L1MC4 LINE L1 6615 6699 -1343 * 256 192 0 0 chr6 170956928 170956980 -18322574 + L1MC4 LINE L1 6652 6703 -1339 225 222 37 0 chr6 170956972 170957026 -18322528 - L1MD3 LINE L1 -1327 6668 6613 * 210 236 0 0 chr6 170957058 170957113 -18322441 + (CATA)n Simple_repeat Simple_repeat 4 58 0 268 247 52 0 chr6 170957113 170957190 -18322364 - L1MC4 LINE L1 -1346 6696 6616 * 288 244 49 0 chr6 170957126 170957208 -18322346 + L1MC4 LINE L1 6618 6703 -1339 396 224 0 0 chr6 170957209 170957307 -18322247 + (TA)n Simple_repeat Simple_repeat 1 98 0 238 278 28 14 chr6 170957380 170957452 -18322102 + L2 LINE L2 3204 3276 -37 1029 127 0 0 chr6 170957540 170957690 -18321864 + MSTB LTR MaLR 1 150 -276 983 208 62 59 chr6 170958693 170958850 -18320704 - L1ME3A LINE L1 -7 6163 6003 3307 49 0 5 chr6 170958850 170959238 -18320316 - L1PA7 LINE L1 0 6154 5769 983 208 62 59 chr6 170959238 170959368 -18320186 - L1ME3A LINE L1 -167 6003 5875 6725 124 50 46 chr6 170959377 170959652 -18319902 + Tigger3b DNA MER2_type 2 274 -2754 2326 91 0 13 chr6 170959652 170959960 -18319594 - AluY SINE Alu -7 304 1 6725 124 50 46 chr6 170959960 170960359 -18319195 + Tigger3b DNA MER2_type 274 670 -2358 2063 134 3 0 chr6 170960359 170960658 -18318896 + AluSx SINE Alu 1 300 -12 6725 124 50 46 chr6 170960658 170960982 -18318572 + Tigger3b DNA MER2_type 670 1009 -2019 2304 70 7 3 chr6 170960982 170961268 -18318286 + AluY SINE Alu 1 287 -24 6725 124 50 46 chr6 170961268 170961473 -18318081 + Tigger3b DNA MER2_type 1009 1212 -19 1820 102 0 0 chr6 170961473 170961709 -18317845 + AluSg SINE Alu 52 287 -23 723 273 86 9 chr6 170961736 170961823 -18317731 - L1ME3A LINE L1 -300 5870 5791 189 0 0 0 chr6 170961823 170961844 -18317710 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 723 273 86 9 chr6 170961844 170961976 -18317578 - L1ME3A LINE L1 -379 5791 5634 310 111 22 0 chr6 170961982 170962027 -18317527 + MLT1D LTR MaLR 453 498 -7 1016 294 95 16 chr6 170962037 170962608 -18316946 - L1ME3A LINE L1 -753 5393 4778 2338 167 37 114 chr6 170962612 170962857 -18316697 + MER68 LTR ERV1 5 267 -295 1953 142 7 3 chr6 170962857 170963152 -18316402 + AluSx SINE Alu 1 296 -16 2338 167 37 114 chr6 170963152 170963494 -18316060 + MER68 LTR ERV1 267 547 -15 1328 258 64 37 chr6 170963516 170964106 -18315448 - L1ME3A LINE L1 -1365 4781 4176 315 75 0 0 chr6 170964108 170964148 -18315406 + MLT1B LTR MaLR 1 40 -350 485 216 10 0 chr6 170964409 170964506 -18315048 + MLT1B LTR MaLR 293 390 0 372 253 48 75 chr6 170964520 170964583 -18314971 - MIR SINE MIR -5 257 194 1984 88 47 15 chr6 170964583 170964857 -18314697 - AluSx SINE Alu -16 296 14 372 253 48 75 chr6 170964857 170964979 -18314575 - MIR SINE MIR -68 194 77 304 188 12 12 chr6 170965110 170965195 -18314359 + (TA)n Simple_repeat Simple_repeat 1 85 0 248 38 19 57 chr6 170965302 170965355 -18314199 + (TA)n Simple_repeat Simple_repeat 1 51 0 261 0 0 0 chr6 170965357 170965386 -18314168 + (CA)n Simple_repeat Simple_repeat 2 30 0 2274 121 0 0 chr6 170966206 170966511 -18313043 + AluSx SINE Alu 1 305 -7 2521 245 49 17 chr6 170966814 170967511 -18312043 + L1MB7 LINE L1 5440 6158 -26 815 189 0 8 chr6 170967512 170967639 -18311915 + FLAM_C SINE Alu 2 127 -16 333 68 0 0 chr6 170968787 170968831 -18310723 + (CA)n Simple_repeat Simple_repeat 2 45 0 2352 67 7 0 chr6 170969237 170969537 -18310017 + AluY SINE Alu 1 302 -9 4886 134 8 4 chr6 170970076 170970800 -18308754 - Tigger1 DNA MER2_type -1687 731 5 3706 152 21 30 chr6 170970803 170970940 -18308614 - L1MA8 LINE L1 -366 5925 5788 2787 92 28 8 chr6 170970940 170971297 -18308257 - THE1B LTR MaLR 0 364 1 3706 152 21 30 chr6 170971297 170972268 -18307286 - L1MA8 LINE L1 -503 5788 4831 1417 189 36 27 chr6 170972629 170972930 -18306624 - AluJo SINE Alu -8 304 1 365 266 177 8 chr6 170974541 170974665 -18304889 + MIR3 SINE MIR 4 148 -60 1961 142 3 0 chr6 170974671 170974960 -18304594 + AluSx SINE Alu 1 290 -22 2312 89 0 16 chr6 170974961 170975277 -18304277 + AluY SINE Alu 1 311 0 217 297 198 0 chr6 170975570 170975661 -18303893 + L2 LINE L2 3163 3271 -1 234 0 0 0 chr6 170975821 170975847 -18303707 + (CTG)n Simple_repeat Simple_repeat 2 27 0 3263 93 18 16 chr6 170975889 170976330 -18303224 + MLT2A1 LTR ERVL 1 442 -2 1530 133 86 8 chr6 170976330 170976585 -18302969 + AluJo SINE Alu 18 292 -20 345 47 0 0 chr6 170976633 170976676 -18302878 + (ATG)n Simple_repeat Simple_repeat 2 44 0 5056 139 24 55 chr6 170976992 170977805 -18301749 - L1MB1 LINE L1 0 6168 5369 2380 80 0 26 chr6 170977805 170978118 -18301436 + AluY SINE Alu 1 305 -6 5056 139 24 55 chr6 170978118 170978368 -18301186 - L1MB1 LINE L1 -799 5369 5113 619 324 45 31 chr6 170978447 170978538 -18301016 + L1M4 LINE L1 4016 4104 -2042 2221 104 0 3 chr6 170978538 170978835 -18300719 - AluSg SINE Alu -14 296 1 619 324 45 31 chr6 170978835 170979259 -18300295 + L1M4 LINE L1 4104 4538 -1608 2351 95 3 0 chr6 170979399 170979725 -18299829 + AluSp SINE Alu 1 327 0 359 243 111 50 chr6 170979913 170980094 -18299460 + MIR SINE MIR 26 217 -45 30 45 0 0 chr6 170980094 170980138 -18299416 + AT_rich Low_complexity Low_complexity 1 44 0 245 244 171 0 chr6 170980510 170980592 -18298962 + MLT1J2 LTR MaLR 298 393 -57 1785 125 82 11 chr6 170980845 170981124 -18298430 - AluJb SINE Alu -13 299 1 2656 43 0 3 chr6 170981276 170981581 -18297973 + AluY SINE Alu 1 304 -7 214 247 0 68 chr6 170982626 170982663 -18296891 - MER5A DNA MER1_type -24 165 134 2446 171 42 7 chr6 170982663 170983091 -18296463 - LTR47B LTR ERVL 0 443 1 214 247 0 68 chr6 170983091 170983126 -18296428 - MER5A DNA MER1_type -55 134 98 1722 163 3 20 chr6 170983813 170984107 -18295447 - AluJo SINE Alu -23 289 1 562 229 97 7 chr6 170984463 170984607 -18294947 + MLT1C LTR MaLR 1 157 -310 271 250 0 0 chr6 170984609 170984665 -18294889 + MER91 DNA MER1_type 85 140 0 1888 135 0 40 chr6 170984716 170985020 -18294534 - AluSx SINE Alu -18 294 3 2315 91 7 0 chr6 170985677 170985973 -18293581 - AluSg SINE Alu -12 298 1 1266 182 3 147 chr6 170986448 170986789 -18292765 + AluJo SINE Alu 2 293 -9 202 79 32 79 chr6 170986813 170986834 -18292720 + (TAAA)n Simple_repeat Simple_repeat 1 21 -39 2062 120 7 0 chr6 170986834 170987117 -18292437 + AluSc SINE Alu 1 285 -24 202 79 32 79 chr6 170987117 170987158 -18292396 + (TAAA)n Simple_repeat Simple_repeat 21 60 0 208 175 175 38 chr6 170987234 170987314 -18292240 + MIR SINE MIR 79 169 -93 481 110 122 0 chr6 170987608 170987690 -18291864 - L1MB3 LINE L1 0 6183 6092 2091 123 6 22 chr6 170987691 170988073 -18291481 + AluSx SINE Alu 1 377 0 631 172 6 25 chr6 170988073 170988236 -18291318 + GA-rich Low_complexity Low_complexity 3 162 0 2542 247 83 55 chr6 170988268 170988962 -18290592 + L1ME3 LINE L1 4762 5435 -727 2335 91 0 0 chr6 170988962 170989259 -18290295 + AluSq SINE Alu 1 297 -16 2542 247 83 55 chr6 170989259 170989920 -18289634 + L1ME3 LINE L1 5435 6160 -2 1856 152 0 14 chr6 170989962 170990259 -18289295 - AluJo SINE Alu -19 293 1 226 163 47 0 chr6 170990266 170990309 -18289245 - L1MCc LINE L1 -5100 1323 1279 986 118 0 7 chr6 170991074 170991210 -18288344 + AluJb SINE Alu 1 135 -177 1788 126 72 4 chr6 170991210 170991487 -18288067 + AluJb SINE Alu 1 296 -16 2394 80 0 3 chr6 170992832 170993134 -18286420 + AluSg1 SINE Alu 1 301 -8 463 251 135 43 chr6 170993194 170993401 -18286153 - Charlie8 DNA MER1_type -2142 275 50 295 330 120 0 chr6 170993441 170993674 -18285880 + HAL1 LINE L1 2245 2505 -2 2088 114 0 20 chr6 170994399 170994697 -18284857 + AluSg SINE Alu 1 292 -18 505 223 42 71 chr6 170994700 170994859 -18284695 - MIR SINE MIR -3 259 67 1755 160 3 41 chr6 170994859 170995187 -18284367 - AluJb SINE Alu 0 317 1 505 223 42 71 chr6 170995187 170995242 -18284312 - MIR SINE MIR -195 67 12 757 165 83 0 chr6 170996511 170996632 -18282922 - FLAM_C SINE Alu -11 132 2 2111 135 0 3 chr6 170997165 170997476 -18282078 - AluSx SINE Alu -2 310 1 736 268 41 37 chr6 170997692 170997835 -18281719 + MIR SINE MIR 9 156 -106 1861 142 7 4 chr6 170997835 170998144 -18281410 + AluJb SINE Alu 3 312 0 736 268 41 37 chr6 170998144 170998242 -18281312 + MIR SINE MIR 156 252 -10 289 244 61 76 chr6 170998334 170998386 -18281168 + MER5B DNA MER1_type 50 101 -77 2231 111 3 0 chr6 170998386 170998683 -18280871 + AluSx SINE Alu 1 298 -14 289 244 61 76 chr6 170998683 170998761 -18280793 + MER5B DNA MER1_type 101 178 0 204 336 125 0 chr6 170998764 170998868 -18280686 + L2 LINE L2 3151 3267 -5 4239 94 3 43 chr6 170999099 170999470 -18280084 + MER41A LTR ERV1 1 342 -212 2182 107 30 0 chr6 170999470 170999769 -18279785 + AluSg SINE Alu 1 308 -2 4239 94 3 43 chr6 170999769 170999974 -18279580 + MER41A LTR ERV1 342 554 0 1998 132 3 20 chr6 171000468 171000771 -18278783 - AluSx SINE Alu -14 298 1 1777 114 114 0 chr6 171000830 171001103 -18278451 - AluSx SINE Alu -8 304 1 907 130 0 0 chr6 171001115 171001238 -18278316 - FLAM_C SINE Alu -20 123 1 1850 282 109 20 chr6 171001452 171001882 -18277672 - L1ME3A LINE L1 -19 6151 5761 2120 118 25 76 chr6 171001882 171001949 -18277605 + MER1B DNA MER1_type 1 70 -2640 2171 104 0 0 chr6 171001949 171002254 -18277300 + AluSg SINE Alu 1 305 0 2120 118 25 76 chr6 171002254 171002540 -18277014 + MER1B DNA MER1_type 70 337 0 1850 282 109 20 chr6 171002540 171003064 -18276490 - L1ME3A LINE L1 -409 5761 5118 302 284 45 55 chr6 171003184 171003385 -18276169 - L1ME3A LINE L1 -1071 5075 4877 2163 125 0 0 chr6 171004287 171004583 -18274971 - AluSx SINE Alu -16 296 1 1697 156 0 8 chr6 171004818 171005081 -18274473 - AluJb SINE Alu -46 266 6 1537 122 21 134 chr6 171005250 171005578 -18273976 + AluJo SINE Alu 5 295 -7 2318 112 0 0 chr6 171005604 171005908 -18273646 - AluSx SINE Alu -8 304 1 6255 45 8 23 chr6 171006432 171007969 -18271585 + SVA Other Other 1 1288 -1045 338 279 103 37 chr6 171058733 171058869 -18220685 + L2 LINE L2 3112 3256 -16 183 354 67 17 chr6 171058872 171059050 -18220504 - L2 LINE L2 -2522 792 606 340 314 35 64 chr6 171059127 171059299 -18220255 + MER5A DNA MER1_type 23 189 0 186 373 13 0 chr6 171059465 171059540 -18220014 - L2 LINE L2 -2910 404 329 11808 126 51 4 chr6 171059770 171061681 -18217873 + Tigger1 DNA MER2_type 1 2001 -417 2745 91 98 7 chr6 171061681 171062088 -18217466 - MLT2A1 LTR ERVL 0 444 1 2285 141 62 10 chr6 171062088 171062489 -18217065 + Tigger1 DNA MER2_type 1997 2418 0 2147 99 0 20 chr6 171064739 171065031 -18214523 + AluSq SINE Alu 1 286 -27 2148 129 0 0 chr6 171067384 171067670 -18211884 + AluSx SINE Alu 3 288 -24 1039 140 21 32 chr6 171068825 171069011 -18210543 + AluJb SINE Alu 106 289 -23 351 330 28 9 chr6 171070108 171070217 -18209337 - L2 LINE L2 -4 3309 3199 312 239 15 0 chr6 171070220 171070287 -18209267 + MER58A DNA MER1_type 1 68 -39 503 276 22 0 chr6 171070296 171070430 -18209124 + MER58A DNA MER1_type 45 181 -43 726 262 195 6 chr6 171070483 171070859 -18208695 - L2 LINE L2 -129 3184 2740 236 366 95 11 chr6 171070879 171071141 -18208413 - L3 LINE CR1 -166 1411 1128 21 36 0 0 chr6 171071743 171071771 -18207783 + AT_rich Low_complexity Low_complexity 1 28 0 1488 265 106 57 chr6 171071799 171072818 -18206736 - L2 LINE L2 -1 3312 2232 510 223 134 13 chr6 171073477 171073634 -18205920 - MER5A DNA MER1_type 0 189 14 2151 123 0 19 chr6 171073676 171073992 -18205562 + AluSx SINE Alu 1 310 -2 677 137 29 0 chr6 171074193 171074295 -18205259 - U6 snRNA snRNA -2 105 1 1610 157 69 0 chr6 171074408 171074682 -18204872 + AluJo SINE Alu 1 293 -19 298 100 0 0 chr6 171074782 171074822 -18204732 - Alu SINE Alu -262 40 1 29 0 0 0 chr6 171075384 171075413 -18204141 + AT_rich Low_complexity Low_complexity 1 29 0 656 190 35 0 chr6 171075609 171075725 -18203829 + FLAM_A SINE Alu 1 120 -13 283 240 94 31 chr6 171076551 171076743 -18202811 - L1MC5 LINE L1 -469 7492 7289 25 0 0 0 chr6 171076833 171076858 -18202696 + GC_rich Low_complexity Low_complexity 1 25 0 1211 153 9 9 chr6 171076862 171077077 -18202477 - L1MC1 LINE L1 -9 6324 6110 410 259 69 51 chr6 171077158 171077374 -18202180 - L1MC5 LINE L1 -737 7224 7005 524 246 185 20 chr6 171077446 171077803 -18201751 - L1MC4a LINE L1 -782 7026 6611 389 99 195 0 chr6 171078068 171078159 -18201395 + L1PA13 LINE L1 6046 6159 -4 2194 104 3 0 chr6 171078634 171078923 -18200631 + AluSx SINE Alu 1 290 -22 28 0 0 0 chr6 171080151 171080179 -18199375 + AT_rich Low_complexity Low_complexity 1 28 0 357 220 70 10 chr6 171080616 171080716 -18198838 + MER50 LTR ERV1 499 604 -130 330 26 0 0 chr6 171080716 171080755 -18198799 + (A)n Simple_repeat Simple_repeat 1 39 0 11486 95 26 6 chr6 171083260 171084973 -18194581 + LOR1-int LTR ERV1 2032 3778 -4342 382 211 232 0 chr6 171085448 171085590 -18193964 - MER104 DNA Tc2 -3 177 3 2329 82 0 10 chr6 171085689 171085992 -18193562 - AluY SINE Alu -8 303 4 258 307 68 11 chr6 171088067 171088155 -18191399 + MIR SINE MIR 20 112 -150 371 312 78 0 chr6 171088209 171088363 -18191191 - MIR SINE MIR 0 262 97 828 136 0 109 chr6 171088637 171088821 -18190733 - FRAM SINE Alu -2 164 1 22 0 0 0 chr6 171088955 171088977 -18190577 + AT_rich Low_complexity Low_complexity 1 22 0 271 256 139 36 chr6 171089976 171090113 -18189441 - MIR SINE MIR -78 184 34 1634 211 40 61 chr6 171090172 171090646 -18188908 - MLT1C LTR MaLR -3 464 1 2191 123 7 0 chr6 171091383 171091685 -18187869 - AluSg SINE Alu -6 304 1 2336 117 0 0 chr6 171093353 171093662 -18185892 - AluSx SINE Alu -3 309 1 1969 153 0 10 chr6 171094734 171095028 -18184526 + AluJb SINE Alu 3 293 -19 1793 180 0 10 chr6 171097242 171097547 -18182007 + AluJo SINE Alu 3 304 -8 926 139 0 0 chr6 171098579 171098708 -18180846 - FRAM SINE Alu -42 134 6 846 189 31 66 chr6 171099692 171099919 -18179635 + MER20 DNA MER1_type 1 219 0 474 291 147 45 chr6 171099971 171100019 -18179535 + L2 LINE L2 1576 1618 -1696 2402 69 7 7 chr6 171100019 171100325 -18179229 - AluSp SINE Alu -7 306 1 474 291 147 45 chr6 171100325 171100699 -18178855 + L2 LINE L2 1618 2041 -1273 184 358 193 16 chr6 171100827 171101081 -18178473 + L2 LINE L2 2293 2591 -723 2209 89 11 0 chr6 171101093 171101373 -18178181 - AluSq SINE Alu -30 283 1 387 273 70 23 chr6 171101540 171101668 -18177886 + MIR SINE MIR 93 226 -36 208 265 0 0 chr6 171102047 171102096 -18177458 + L2 LINE L2 3265 3313 0 1515 154 0 49 chr6 171102135 171102401 -18177153 + AluJo SINE Alu 29 281 -31 1486 131 127 22 chr6 171102401 171102667 -18176887 - AluSx SINE Alu -17 295 1 385 303 189 0 chr6 171102746 171102878 -18176676 + MER5A DNA MER1_type 22 178 -11 228 285 13 152 chr6 171103852 171104003 -18175551 - L2 LINE L2 0 3272 3143 402 254 94 7 chr6 171104137 171104275 -18175279 + MIR SINE MIR 104 253 -9 28 0 0 0 chr6 171104351 171104379 -18175175 + AT_rich Low_complexity Low_complexity 1 28 0 800 192 137 0 chr6 171104586 171104768 -18174786 - MER3 DNA MER1_type -1 208 2 29 0 0 0 chr6 171104848 171104877 -18174677 + AT_rich Low_complexity Low_complexity 1 29 0 353 264 19 77 chr6 171106014 171106112 -18173442 + MIR SINE MIR 93 195 -67 1576 178 14 44 chr6 171106112 171106196 -18173358 + L1MB7 LINE L1 5813 5898 -286 2065 103 4 11 chr6 171106196 171106477 -18173077 + AluSx SINE Alu 1 279 -33 469 71 12 12 chr6 171106477 171106561 -18172993 + (CA)n Simple_repeat Simple_repeat 1 84 0 1576 178 14 44 chr6 171106561 171106841 -18172713 + L1MB7 LINE L1 5896 6167 -17 353 264 19 77 chr6 171106841 171106897 -18172657 + MIR SINE MIR 195 238 -24 1648 110 5 0 chr6 171106897 171107116 -18172438 - AluSg/x SINE Alu -14 298 79 2272 112 0 3 chr6 171107205 171107532 -18172022 + AluSq SINE Alu 1 326 0 22 0 0 0 chr6 171107805 171107827 -18171727 + AT_rich Low_complexity Low_complexity 1 22 0 197 307 40 27 chr6 171108345 171108420 -18171134 + L2 LINE L2 3234 3309 -4 1938 88 0 4 chr6 171109204 171109455 -18170099 - AluSq SINE Alu -63 250 1 339 332 37 27 chr6 171109857 171110044 -18169510 + MER5A DNA MER1_type 1 189 0 2110 79 54 0 chr6 171111465 171111743 -18167811 + AluSp SINE Alu 1 293 -20 387 0 0 0 chr6 171112537 171112580 -18166974 + (CA)n Simple_repeat Simple_repeat 1 43 0 277 197 16 0 chr6 171113968 171114029 -18165525 - L1ME LINE L1 -296 5825 5764 2278 94 0 38 chr6 171114030 171114349 -18165205 - AluSq SINE Alu -6 307 1 2179 122 3 0 chr6 171114583 171114879 -18164675 - AluSq SINE Alu -16 297 1 271 75 0 50 chr6 171115219 171115259 -18164295 - AluSc SINE Alu -43 256 219 1282 199 193 84 chr6 171117963 171118425 -18161129 + MLT1E2 LTR MaLR 1 515 -111 1136 152 156 42 chr6 171118525 171118762 -18160792 + AluJb SINE Alu 30 293 -19 943 146 6 41 chr6 171119051 171119222 -18160332 - AluSg/x SINE Alu -18 292 128 217 333 94 0 chr6 171120359 171120455 -18159099 - MIR3 SINE MIR -23 185 81 195 170 0 0 chr6 171123027 171123074 -18156480 + GA-rich Low_complexity Low_complexity 1 47 0 1229 188 0 5 chr6 171124465 171124689 -18154865 - AluSq SINE Alu -88 225 3 628 299 110 4 chr6 171125594 171125848 -18153706 - MLT1J2 LTR MaLR -147 303 23 994 218 57 24 chr6 171126100 171126348 -18153206 + MIR SINE MIR 5 260 -2 242 306 16 0 chr6 171126940 171127002 -18152552 + L2 LINE L2 3234 3296 -17 2262 143 43 6 chr6 171127493 171127844 -18151710 - THE1B LTR MaLR 0 364 1 2242 115 3 0 chr6 171128125 171128430 -18151124 + AluSx SINE Alu 1 306 -6 1550 85 107 78 chr6 171128664 171128934 -18150620 - AluY SINE Alu -13 298 21 629 252 0 0 chr6 171129043 171129166 -18150388 - MER2 DNA MER2_type -206 139 17 456 307 7 20 chr6 171129168 171129318 -18150236 - MIR SINE MIR -104 158 11 1952 139 0 20 chr6 171130652 171130955 -18148599 - AluJo SINE Alu -15 297 1 180 125 0 0 chr6 171131549 171131581 -18147973 + (CCA)n Simple_repeat Simple_repeat 2 33 0 2164 126 0 0 chr6 171132431 171132725 -18146829 - AluSx SINE Alu -18 294 1 284 225 275 36 chr6 171133583 171133947 -18145607 - L2 LINE L2 -50 3263 2813 1212 103 0 0 chr6 171134223 171134378 -18145176 - AluSg/x SINE Alu -73 239 85 186 103 0 0 chr6 171134387 171134416 -18145138 + (T)n Simple_repeat Simple_repeat 1 29 0 27 29 0 0 chr6 171135015 171135049 -18144505 + AT_rich Low_complexity Low_complexity 1 34 0 249 277 36 27 chr6 171135185 171135297 -18144257 + L2 LINE L2 1813 1925 -1389 27573 30 3 1 chr6 171135414 171138690 -18140864 + L1P LINE L1 2025 5307 -839 263 309 85 0 chr6 171139924 171140018 -18139536 + MIR3 SINE MIR 94 195 -13 2013 262 104 56 chr6 171141764 171142465 -18137089 - L2 LINE L2 -838 2476 1715 2230 113 0 7 chr6 171142465 171142775 -18136779 + AluSg SINE Alu 1 308 -2 2013 262 104 56 chr6 171142775 171143030 -18136524 - L2 LINE L2 -1599 1715 1474 2372 98 0 13 chr6 171143044 171143359 -18136195 - AluSx SINE Alu -1 311 1 616 149 0 0 chr6 171143361 171143455 -18136099 - AluSq/x SINE Alu -180 132 39 1342 183 11 33 chr6 171143819 171144093 -18135461 - MLT1A1 LTR MaLR -97 268 1 2118 120 0 7 chr6 171144109 171144401 -18135153 + AluSq SINE Alu 1 290 -23 218 303 81 0 chr6 171144475 171144574 -18134980 + MIR SINE MIR 132 238 -24 212 188 21 21 chr6 171144596 171144644 -18134910 + L2 LINE L2 3180 3227 -86 2393 130 37 7 chr6 171145152 171145649 -18133905 + L1MA4 LINE L1 5588 6142 -158 1015 172 6 0 chr6 171146024 171146204 -18133350 + AluSg/x SINE Alu 127 307 -3 224 260 0 0 chr6 171149245 171149295 -18130259 - L2 LINE L2 0 3313 3264 25 31 0 0 chr6 171149365 171149397 -18130157 + AT_rich Low_complexity Low_complexity 1 32 0 13359 68 34 0 chr6 171150745 171152435 -18127119 - HERVL-A2 LTR ERVL -3906 1748 1 3158 85 69 28 chr6 171152435 171152870 -18126684 - MLT2A2 LTR ERVL 0 453 1 2015 141 3 0 chr6 171153163 171153461 -18126093 + AluSx SINE Alu 1 299 -13 944 178 67 63 chr6 171154225 171154494 -18125060 - L1MC5 LINE L1 -999 6962 6693 5976 121 65 5 chr6 171156714 171157670 -18121884 - Tigger1 DNA MER2_type 0 2418 1406 10493 79 9 1 chr6 171157777 171159164 -18120390 - L1P LINE L1 -1308 4838 3440 6234 114 17 1 chr6 171159140 171160079 -18119475 - L1P LINE L1 -3203 2943 1990 * 1289 238 32 13 chr6 171160185 171160496 -18119058 + L1MC/D LINE L1 19 335 -6091 906 157 0 0 chr6 171160496 171160630 -18118924 + AluJb SINE Alu 1 134 -178 5797 135 56 69 chr6 171160631 171161796 -18117758 + L1MC/D LINE L1 329 1478 -4948 654 179 0 18 chr6 171161798 171161910 -18117644 + FRAM SINE Alu 62 171 -5 811 137 0 14 chr6 171161911 171162050 -18117504 + L1MC/D LINE L1 1467 1603 -4823 901 157 0 22 chr6 171162050 171162184 -18117370 + FLAM_A SINE Alu 1 131 -2 1096 283 21 0 chr6 171162186 171162518 -18117036 + L1MC/D LINE L1 3564 3902 -2524 461 79 26 13 chr6 171162518 171162594 -18116960 - AluSc SINE Alu -9 300 224 516 257 76 41 chr6 171163308 171163479 -18116075 + MLT1J LTR MaLR 1 177 -334 186 139 0 0 chr6 171166597 171166633 -18112921 - L2 LINE L2 -4 3309 3274 2198 109 0 10 chr6 171168781 171169075 -18110479 + AluSc SINE Alu 3 293 -16 264 259 51 120 chr6 171169285 171169368 -18110186 + MIR3 SINE MIR 16 84 -124 1948 158 0 0 chr6 171169368 171169659 -18109895 - AluSx SINE Alu -21 291 1 264 259 51 120 chr6 171169659 171169733 -18109821 + MIR3 SINE MIR 84 162 -46 3672 130 5 3 chr6 171172131 171172707 -18106847 - L1P LINE L1 -5567 579 3 486 0 0 0 chr6 171173049 171173103 -18106451 + (TG)n Simple_repeat Simple_repeat 2 55 0 3900 208 58 30 chr6 171173788 171174794 -18104760 + L1MC3 LINE L1 6734 7767 -18 455 73 15 0 chr6 171174798 171174866 -18104688 + (TA)n Simple_repeat Simple_repeat 2 70 0 346 238 61 40 chr6 171175413 171175522 -18104032 + MIR3 SINE MIR 95 205 -3 284 312 18 0 chr6 171175696 171175805 -18103749 - L2 LINE L2 -3 3310 3200 1035 146 13 0 chr6 171176361 171176519 -18103035 + AluSg/x SINE Alu 137 296 -16 1276 97 0 0 chr6 171177722 171177877 -18101677 - AluSc SINE Alu -154 155 1 6514 208 35 49 chr6 171177879 171178805 -18100749 + L1MC/D LINE L1 3893 4782 -1644 2018 150 10 3 chr6 171178805 171179112 -18100442 + AluJb SINE Alu 1 309 -3 6514 208 35 49 chr6 171179112 171179995 -18099559 + L1MC/D LINE L1 4782 5676 -750 1178 108 0 0 chr6 171179997 171180154 -18099400 + AluSg/x SINE Alu 137 293 -19 929 152 87 0 chr6 171180154 171180338 -18099216 + L1MC/D LINE L1 5670 5869 -744 12315 176 32 35 chr6 171180438 171184079 -18095475 - L1PBa LINE L1 -1424 5438 2028 2094 131 7 0 chr6 171184079 171184385 -18095169 - AluSx SINE Alu -2 310 3 12315 176 32 35 chr6 171184385 171184830 -18094724 - L1PBa LINE L1 -4834 2028 1583 283 311 41 0 chr6 171184951 171185073 -18094481 - L1M4 LINE L1 -3049 3097 2971 193 75 50 0 chr6 171185269 171185309 -18094245 + T-rich Low_complexity Low_complexity 2 43 0 1970 85 48 29 chr6 171185597 171185869 -18093685 + AluSx SINE Alu 23 299 -13 1738 93 4 4 chr6 171186344 171186569 -18092985 - AluSq SINE Alu -88 225 1 296 191 0 0 chr6 171187658 171187705 -18091849 - Alu SINE Alu -261 47 1 2322 102 0 0 chr6 171187968 171188272 -18091282 + AluSx SINE Alu 1 304 -8 280 278 196 15 chr6 171188279 171188412 -18091142 + L2 LINE L2 3116 3272 0 835 254 54 13 chr6 171190434 171190658 -18088896 + MIR SINE MIR 13 245 -17 1775 118 22 60 chr6 171191211 171191526 -18088028 - AluSx SINE Alu -9 303 1 2205 102 17 0 chr6 171192036 171192329 -18087225 - AluSx SINE Alu -14 298 1 2106 107 3 7 chr6 171192719 171193017 -18086537 + AluSx SINE Alu 1 297 -15 2086 132 0 0 chr6 171193230 171193534 -18086020 - AluSx SINE Alu -8 304 1 181 300 86 0 chr6 171193799 171193869 -18085685 - L2 LINE L2 -55 3217 3142 251 256 278 8 chr6 171194591 171194724 -18084830 + MIR SINE MIR 94 262 0 1736 183 7 10 chr6 171195018 171195319 -18084235 + AluJo SINE Alu 1 300 -12 1018 120 0 0 chr6 171195363 171195496 -18084058 + AluSq/x SINE Alu 3 135 -177 2054 157 0 0 chr6 171195496 171195801 -18083753 + AluSx SINE Alu 1 305 -7 559 168 0 10 chr6 171196871 171197010 -18082544 + MER53 DNA DNA 1 189 0 464 268 200 10 chr6 171197239 171197444 -18082110 - MIR SINE MIR -2 260 17 196 132 53 26 chr6 171197556 171197594 -18081960 + MIR SINE MIR 37 75 -187 21 0 0 0 chr6 171198721 171198742 -18080812 + AT_rich Low_complexity Low_complexity 1 21 0 296 188 31 16 chr6 171199007 171199071 -18080483 + L2 LINE L2 3203 3267 -5 706 211 0 8 chr6 171199207 171199330 -18080224 + FLAM_C SINE Alu 2 123 -20 352 77 96 0 chr6 171199647 171199699 -18079855 - L1PA16 LINE L1 -9 6157 6101 327 290 40 0 chr6 171200502 171200602 -18078952 - L2 LINE L2 -9 3304 3201 29 0 0 25 chr6 171201410 171201421 -18078133 + AT_rich Low_complexity Low_complexity 1 11 -28 2199 119 3 25 chr6 171201421 171201740 -18077814 - AluSx SINE Alu 0 312 1 29 0 0 25 chr6 171201740 171201768 -18077786 + AT_rich Low_complexity Low_complexity 11 39 0 1494 142 154 8 chr6 171201768 171202028 -18077526 - AluSx SINE Alu -4 298 1 459 65 0 16 chr6 171202543 171202605 -18076949 - MADE1 DNA Mariner -2 78 18 2263 108 0 7 chr6 171202606 171202903 -18076651 + AluSg SINE Alu 1 295 -15 2352 92 0 7 chr6 171202909 171203213 -18076341 + AluSx SINE Alu 1 302 -10 365 346 33 33 chr6 171203260 171203471 -18076083 + MIR SINE MIR 51 261 -1 1099 163 0 0 chr6 171203812 171203972 -18075582 + FRAM SINE Alu 1 160 -6 2393 79 0 19 chr6 171205087 171205405 -18074149 + AluSx SINE Alu 1 312 0 1998 140 0 0 chr6 171206007 171206299 -18073255 + AluSx SINE Alu 1 292 -20 207 267 199 30 chr6 171209107 171209238 -18070316 + MIR SINE MIR 1 153 -109 2629 131 33 0 chr6 171209455 171209851 -18069703 - MSTC LTR MaLR -19 409 1 659 370 62 13 chr6 171210306 171210758 -18068796 + L3 LINE CR1 141 614 -963 400 266 26 71 chr6 171211087 171211241 -18068313 + L3 LINE CR1 611 757 -820 284 320 186 60 chr6 171211312 171211723 -18067831 + L3 LINE CR1 941 1443 -134 2128 102 20 0 chr6 171211723 171212016 -18067538 + AluSx SINE Alu 1 299 -13 284 320 186 60 chr6 171212016 171212167 -18067387 + L3 LINE CR1 1443 1574 -3 2028 114 13 3 chr6 171212488 171212787 -18066767 - AluSc SINE Alu -7 302 1 1751 138 0 43 chr6 171212931 171213236 -18066318 - AluSx SINE Alu -20 292 1 180 87 109 0 chr6 171213778 171213824 -18065730 + CT-rich Low_complexity Low_complexity 5 55 0 188 318 56 32 chr6 171213983 171214109 -18065445 + L2 LINE L2 3180 3308 -5 640 167 9 0 chr6 171214279 171214393 -18065161 - MER53 DNA DNA -1 188 74 2076 112 3 3 chr6 171215654 171215950 -18063604 + AluSx SINE Alu 1 296 -16 1964 128 0 0 chr6 171215954 171216260 -18063294 + AluSx SINE Alu 2 307 0 2054 136 0 7 chr6 171216946 171217248 -18062306 - AluSx SINE Alu -12 300 1 2279 77 3 3 chr6 171218223 171218520 -18061034 - AluSx SINE Alu -15 297 1 2158 110 0 7 chr6 171218821 171219129 -18060425 - AluSq SINE Alu -5 308 3 2186 93 6 3 chr6 171219367 171219679 -18059875 - AluSp SINE Alu 0 313 1 23 54 0 0 chr6 171220501 171220538 -18059016 + AT_rich Low_complexity Low_complexity 1 37 0 1962 117 3 32 chr6 171220632 171220941 -18058613 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr6 171220941 171220969 -18058585 + AT_rich Low_complexity Low_complexity 1 28 0 350 268 108 32 chr6 171222266 171222423 -18057131 - MIR SINE MIR -70 192 24 181 299 81 11 chr6 171222768 171222855 -18056699 + MIR3 SINE MIR 81 173 -35 1820 85 16 0 chr6 171223826 171224072 -18055482 + AluSx SINE Alu 56 305 -7 891 185 0 0 chr6 171224072 171224234 -18055320 + AluJo/FRAM SINE Alu 134 295 -17 2197 106 0 0 chr6 171224476 171224769 -18054785 + AluSx SINE Alu 3 295 -17 580 277 17 40 chr6 171224849 171224991 -18054563 + MIR SINE MIR 20 159 -103 552 44 0 132 chr6 171224991 171225032 -18054522 + MADE1 DNA Mariner 2 26 -54 2086 121 3 0 chr6 171225032 171225329 -18054225 - AluSg SINE Alu -12 298 1 552 44 0 132 chr6 171225329 171225378 -18054176 + MADE1 DNA Mariner 26 80 0 580 277 17 40 chr6 171225378 171225412 -18054142 + MIR SINE MIR 159 192 -70 755 127 17 0 chr6 171225966 171226084 -18053470 - FLAM_C SINE Alu -12 131 12 248 308 153 0 chr6 171226206 171226324 -18053230 + MIR SINE MIR 20 154 -71 377 164 0 15 chr6 171226327 171226394 -18053160 - U8 snRNA snRNA -21 115 50 1940 127 38 0 chr6 171226847 171227139 -18052415 + AluSx SINE Alu 1 303 -9 2158 93 7 10 chr6 171227771 171228072 -18051482 + AluSx SINE Alu 2 301 -11 278 331 123 8 chr6 171228622 171228752 -18050802 - MIR3 SINE MIR -57 151 7 21 0 0 0 chr6 171229196 171229217 -18050337 + AT_rich Low_complexity Low_complexity 1 21 0 2281 103 0 3 chr6 171232621 171232931 -18046623 - AluSx SINE Alu -3 309 1 253 329 13 0 chr6 171233288 171233364 -18046190 - L2 LINE L2 -1 3312 3236 763 219 47 6 chr6 171235131 171235300 -18044254 - MER5B DNA MER1_type -2 176 1 260 280 54 102 chr6 171235324 171235510 -18044044 + MIR SINE MIR 53 229 -33 223 172 17 35 chr6 171236009 171236067 -18043487 - MIR3 SINE MIR 0 208 152 223 305 146 0 chr6 171236201 171236283 -18043271 - MIR SINE MIR -68 140 47 2085 94 3 10 chr6 171236613 171236912 -18042642 + AluSp SINE Alu 3 299 -14 2193 50 0 109 chr6 171236914 171237252 -18042302 + AluY SINE Alu 1 301 0 248 262 71 36 chr6 171237503 171237587 -18041967 - L2 LINE L2 -18 3295 3209 543 172 115 0 chr6 171237611 171237733 -18041821 - L1MB3 LINE L1 0 6183 6048 422 317 61 37 chr6 171238012 171238258 -18041296 - L2 LINE L2 -92 3221 2970 2125 92 0 49 chr6 171238353 171238678 -18040876 - AluSq SINE Alu -4 309 1 527 263 70 70 chr6 171238809 171238894 -18040660 + MIR SINE MIR 20 104 -158 1843 133 3 3 chr6 171238894 171239188 -18040366 - AluSx SINE Alu -18 294 1 527 263 70 70 chr6 171239188 171239345 -18040209 + MIR SINE MIR 103 262 0 1130 167 4 30 chr6 171239683 171239917 -18039637 - AluSq SINE Alu -1 312 85 1250 157 9 18 chr6 171240025 171240254 -18039300 + AluJb SINE Alu 85 311 -1 735 174 0 0 chr6 171240365 171240480 -18039074 - AluJb SINE Alu -26 286 172 490 177 10 21 chr6 171240474 171240570 -18038984 + AluJo SINE Alu 47 141 -171 * 1818 148 3 0 chr6 171240714 171241005 -18038549 - AluJo SINE Alu -9 303 12 199 308 161 21 chr6 171242471 171242614 -18036940 - MIR SINE MIR -51 211 49 1601 201 0 19 chr6 171243309 171243622 -18035932 + AluJb SINE Alu 1 307 -5 2152 107 3 3 chr6 171243623 171243931 -18035623 + AluSq SINE Alu 1 308 -5 307 290 129 40 chr6 171244043 171244291 -18035263 - L2 LINE L2 -649 2665 2396 2247 100 0 0 chr6 171245270 171245570 -18033984 + AluSx SINE Alu 1 300 -12 180 184 81 58 chr6 171245570 171245657 -18033897 + MIR SINE MIR 109 197 -65 351 0 0 0 chr6 171245736 171245775 -18033779 + (CA)n Simple_repeat Simple_repeat 1 39 0 452 217 54 10 chr6 171246358 171246504 -18033050 - LTR45B LTR ERV1 -1 524 340 817 52 9 9 chr6 171246812 171246928 -18032626 + (TTCTC)n Simple_repeat Simple_repeat 3 118 0 920 147 52 37 chr6 171246929 171247162 -18032392 - AluJo SINE Alu -24 288 1 21 57 0 0 chr6 171248253 171248288 -18031266 + AT_rich Low_complexity Low_complexity 1 35 0 1974 131 3 0 chr6 171248380 171248678 -18030876 - AluSg SINE Alu -11 299 1 366 317 30 90 chr6 171248715 171248865 -18030689 - MIR SINE MIR -7 255 126 1635 125 0 19 chr6 171248865 171249121 -18030433 + AluJb SINE Alu 1 251 -61 366 317 30 90 chr6 171249121 171249238 -18030316 - MIR SINE MIR -136 126 4 202 154 26 0 chr6 171249415 171249454 -18030100 + T-rich Low_complexity Low_complexity 5 44 0 2148 109 0 3 chr6 171250050 171250353 -18029201 + AluSq SINE Alu 1 302 -11 1264 221 117 39 chr6 171250374 171250850 -18028704 + L1MEc LINE L1 2078 2560 -3655 1888 168 3 0 chr6 171250850 171251160 -18028394 + AluJo SINE Alu 1 311 -1 1264 221 117 39 chr6 171251160 171251267 -18028287 + L1MEc LINE L1 2560 2657 -3558 1882 122 0 61 chr6 171252099 171252410 -18027144 - AluSx SINE Alu -20 292 1 286 274 0 71 chr6 171254528 171254612 -18024942 + MIR SINE MIR 106 183 -79 230 159 0 23 chr6 171255467 171255511 -18024043 + GA-rich Low_complexity Low_complexity 3 45 0 1878 123 0 3 chr6 171256677 171256985 -18022569 + AluSx SINE Alu 1 307 0 1793 146 9 51 chr6 171257044 171257359 -18022195 + AluJb SINE Alu 1 302 -10 329 254 28 0 chr6 171257642 171257713 -18021841 + MER91B DNA MER1_type 1 73 -117 1972 112 0 0 chr6 171257949 171258226 -18021328 - AluSx SINE Alu -31 281 5 1677 148 33 0 chr6 171258236 171258507 -18021047 - AluSx SINE Alu -32 280 1 2126 99 3 0 chr6 171259693 171259995 -18019559 - AluSp SINE Alu -2 311 9 450 17 17 0 chr6 171259999 171260057 -18019497 + (TTTA)n Simple_repeat Simple_repeat 2 144 0 1858 115 14 4 chr6 171260057 171260336 -18019218 - AluSx SINE Alu 0 340 1 417 292 90 0 chr6 171260387 171260531 -18019023 + MIR SINE MIR 8 164 -98 31 26 0 0 chr6 171260703 171260741 -18018813 + AT_rich Low_complexity Low_complexity 1 38 0 790 109 0 0 chr6 171260741 171260842 -18018712 - FLAM_C SINE Alu -25 118 18 1551 153 0 8 chr6 171260988 171261242 -18018312 + AluJo SINE Alu 1 252 -60 1926 89 7 7 chr6 171261242 171261513 -18018041 - AluSc SINE Alu -37 272 2 2168 80 20 7 chr6 171262155 171262457 -18017097 + AluSg SINE Alu 1 306 -4 384 234 69 91 chr6 171262961 171263136 -18016418 + MER112 DNA MER1_type 6 176 -84 1109 102 0 0 chr6 171263171 171263318 -18016236 + AluSq/x SINE Alu 3 149 -163 317 100 0 0 chr6 171263319 171263369 -18016185 + Alu SINE Alu 259 308 0 648 120 0 0 chr6 171263377 171263477 -18016077 + (TA)n Simple_repeat Simple_repeat 2 101 0 283 288 0 0 chr6 171263481 171263561 -18015993 + MER112 DNA MER1_type 181 260 0 488 323 32 6 chr6 171263614 171263772 -18015782 + L2 LINE L2 3110 3271 -1 355 315 49 14 chr6 171263771 171263914 -18015640 + MIR SINE MIR 102 249 -13 * 2226 94 3 22 chr6 171264277 171264595 -18014959 + AluSq SINE Alu 1 312 -1 1851 105 0 99 chr6 171265753 171266096 -18013458 + AluSx SINE Alu 1 309 -3 211 285 87 47 chr6 171266310 171266482 -18013072 + L2 LINE L2 2871 3049 -223 374 294 83 0 chr6 171266641 171266750 -18012804 + MIR SINE MIR 50 167 -95 1924 124 39 12 chr6 171267033 171267364 -18012190 - L1MA3 LINE L1 0 6305 5966 240 172 0 0 chr6 171267365 171267423 -18012131 + T-rich Low_complexity Low_complexity 1 58 0 12184 155 36 37 chr6 171267423 171267557 -18011997 - L1M1 LINE L1 -3965 3600 3467 1517 168 8 8 chr6 171267557 171267825 -18011729 - AluSx SINE Alu -7 305 38 12184 155 36 37 chr6 171267825 171268059 -18011495 - L1M1 LINE L1 -4098 3467 3234 2003 121 19 7 chr6 171268059 171268366 -18011188 - AluSx SINE Alu -1 311 1 12184 155 36 37 chr6 171268366 171268716 -18010838 - L1M1 LINE L1 -4331 3234 2885 2123 121 0 3 chr6 171268716 171269021 -18010533 + AluSx SINE Alu 1 304 -8 12184 155 36 37 chr6 171269021 171269362 -18010192 - L1M1 LINE L1 -4680 2885 2545 2243 97 7 0 chr6 171269362 171269672 -18009882 - AluSp SINE Alu -1 312 1 12184 155 36 37 chr6 171269672 171269690 -18009864 - L1M1 LINE L1 -5020 2545 2528 2170 113 3 0 chr6 171269690 171269999 -18009555 - AluSx SINE Alu -2 310 1 12184 155 36 37 chr6 171269999 171271836 -18007718 - L1M1 LINE L1 -5037 2528 23 240 269 194 41 chr6 171273225 171273493 -18006061 + L2 LINE L2 2226 2534 -780 2046 99 37 3 chr6 171273591 171273885 -18005669 - AluSg SINE Alu -2 308 5 195 311 106 15 chr6 171273885 171274017 -18005537 + L2 LINE L2 2716 2859 -455 2077 102 54 0 chr6 171274405 171274699 -18004855 - AluSx SINE Alu -2 310 1 1732 153 3 7 chr6 171274823 171275123 -18004431 + AluJo SINE Alu 5 303 -9 629 216 0 8 chr6 171275154 171275279 -18004275 + FLAM_C SINE Alu 9 132 -11 1809 153 3 16 chr6 171276207 171276514 -18003040 + AluJb SINE Alu 2 304 -8 2023 134 3 0 chr6 171276561 171276868 -18002686 - AluSp SINE Alu -5 308 1 1524 156 123 4 chr6 171276952 171277221 -18002333 - AluJo SINE Alu 0 302 2 1622 123 0 4 chr6 171277434 171277677 -18001877 - AluSq SINE Alu -71 242 1 199 228 236 16 chr6 171278035 171278162 -18001392 + L3 LINE CR1 1422 1576 -1 1846 179 0 0 chr6 171278295 171278607 -18000947 + AluJb SINE Alu 1 312 0 180 0 0 0 chr6 171279155 171279175 -18000379 + (TTA)n Simple_repeat Simple_repeat 1 20 0 1985 102 0 4 chr6 171279180 171279454 -18000100 - AluSg SINE Alu -37 273 1 2059 111 21 0 chr6 171280383 171280545 -17999009 - AluSx SINE Alu -17 295 123 189 0 0 0 chr6 171280545 171280566 -17998988 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2059 111 21 0 chr6 171280566 171280692 -17998862 - AluSx SINE Alu -189 123 1 515 150 0 0 chr6 171280729 171280809 -17998745 - MADE1 DNA Mariner 0 80 1 2094 119 3 0 chr6 171280869 171281171 -17998383 - AluSx SINE Alu -9 303 1 2262 104 0 0 chr6 171282633 171282941 -17996613 - AluSq SINE Alu -5 308 1 308 164 0 70 chr6 171283405 171283483 -17996071 + GA-rich Low_complexity Low_complexity 2 69 -51 2198 95 0 7 chr6 171283483 171283814 -17995740 + AluSg SINE Alu 1 310 0 308 164 0 70 chr6 171283814 171283863 -17995691 + GA-rich Low_complexity Low_complexity 69 120 0 245 259 35 24 chr6 171284685 171284770 -17994784 - L2 LINE L2 -4 3309 3224 1644 98 0 0 chr6 171284772 171284997 -17994557 - AluY SINE Alu -86 225 1 1778 120 40 0 chr6 171285002 171285297 -17994257 - AluSx SINE Alu 0 306 1 352 275 100 17 chr6 171285606 171285726 -17993828 + MER5A DNA MER1_type 4 133 -56 1076 152 0 6 chr6 171285728 171285906 -17993648 - AluSg/x SINE Alu -16 296 120 2274 93 7 0 chr6 171285917 171286217 -17993337 + AluSx SINE Alu 1 302 -10 42 0 0 62 chr6 171286671 171286699 -17992855 + AT_rich Low_complexity Low_complexity 1 29 -32 8762 32 0 244 chr6 171286699 171288533 -17991021 - SVA Other Other 0 1386 1 42 0 0 62 chr6 171288533 171288569 -17990985 + AT_rich Low_complexity Low_complexity 29 61 0 2105 105 0 10 chr6 171288580 171288875 -17990679 + AluSx SINE Alu 1 292 -20 734 192 0 0 chr6 171288875 171288995 -17990559 - AluJo/FLAM SINE Alu -191 121 2 192 354 133 0 chr6 171289166 171289279 -17990275 + L2 LINE L2 3186 3313 0 1878 114 7 0 chr6 171289295 171289566 -17989988 + AluSx SINE Alu 1 273 -39 233 53 53 0 chr6 171289577 171289615 -17989939 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2326 72 0 0 chr6 171289914 171290206 -17989348 - AluSq SINE Alu -21 292 1 322 306 9 36 chr6 171290226 171290337 -17989217 - MIR3 SINE MIR -25 183 76 1109 125 0 0 chr6 171290576 171290736 -17988818 - AluSg/x SINE Alu -17 295 136 577 264 57 68 chr6 171291652 171291739 -17987815 - MIR SINE MIR 0 262 176 1483 145 6 88 chr6 171291739 171291945 -17987609 - AluJo SINE Alu -8 304 132 2078 103 0 3 chr6 171291945 171292271 -17987283 + AluSx SINE Alu 3 327 0 1483 145 6 88 chr6 171292271 171292394 -17987160 - AluJo SINE Alu -180 132 1 577 264 57 68 chr6 171292394 171292571 -17986983 - MIR SINE MIR -86 176 1 2039 112 3 0 chr6 171292956 171293242 -17986312 - AluSq SINE Alu -26 287 1 248 324 162 0 chr6 171293554 171293659 -17985895 + L2 LINE L2 3151 3272 0 746 188 8 0 chr6 171294313 171294441 -17985113 + FLAM_A SINE Alu 1 129 -4 2030 96 0 0 chr6 171294448 171294720 -17984834 + AluSx SINE Alu 24 295 -17 231 36 0 0 chr6 171294720 171294748 -17984806 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 579 312 69 23 chr6 171295172 171295390 -17984164 + MIR SINE MIR 22 249 -13 1737 114 35 24 chr6 171295746 171296098 -17983456 + AluSq SINE Alu 1 313 0 351 0 0 0 chr6 171296350 171296389 -17983165 + (TG)n Simple_repeat Simple_repeat 2 40 0 1519 138 24 28 chr6 171296673 171296920 -17982634 + AluJb SINE Alu 1 246 -66 304 277 76 8 chr6 171296953 171297072 -17982482 - L1ME3A LINE L1 -1 6169 6043 * 425 272 106 54 chr6 171297061 171297072 -17982482 + L1MB1 LINE L1 5485 5494 -695 2187 102 0 0 chr6 171297072 171297375 -17982179 + AluY SINE Alu 1 303 -8 425 272 106 54 chr6 171297375 171297694 -17981860 + L1MB1 LINE L1 5494 5832 -357 * 1277 234 82 3 chr6 171297399 171297753 -17981801 + L1ME3A LINE L1 5527 5908 -262 1078 88 0 0 chr6 171297762 171297899 -17981655 - AluSq/x SINE Alu -176 137 1 269 244 37 0 chr6 171297899 171297981 -17981573 - L1ME LINE L1 -657 5507 5423 723 185 15 15 chr6 171297983 171298118 -17981436 - AluJo SINE Alu -176 136 2 330 280 89 12 chr6 171298118 171298286 -17981268 - L1ME LINE L1 -732 5434 5254 2153 124 0 0 chr6 171298482 171298781 -17980773 - AluSx SINE Alu -13 299 1 1123 137 0 0 chr6 171299528 171299696 -17979858 - AluSg/x SINE Alu -10 302 135 2086 121 0 0 chr6 171299698 171299995 -17979559 - AluSx SINE Alu -15 297 1 2441 69 0 0 chr6 171300004 171300310 -17979244 - AluY SINE Alu -5 306 1 2045 122 0 16 chr6 171300310 171300614 -17978940 - AluSx SINE Alu -13 299 1 1509 111 0 14 chr6 171300730 171300946 -17978608 + AluSg/x SINE Alu 81 293 -19 922 176 18 0 chr6 171301018 171301183 -17978371 + MLT1B LTR MaLR 8 175 -215 587 225 0 8 chr6 171301185 171301305 -17978249 + MLT1B LTR MaLR 349 467 0 1672 155 0 0 chr6 171301479 171301781 -17977773 + AluJo SINE Alu 17 318 0 1095 228 40 18 chr6 171301788 171302060 -17977494 + MLT1C LTR MaLR 190 467 0 481 307 12 18 chr6 171302999 171303162 -17976392 + MIR SINE MIR 101 262 0 1139 152 0 182 chr6 171303294 171303657 -17975897 + AluJo SINE Alu 4 300 -2 2315 85 0 22 chr6 171303661 171303977 -17975577 + AluSc SINE Alu 1 309 0 621 151 143 25 chr6 171303996 171304115 -17975439 + FLAM_C SINE Alu 2 134 -9 2055 129 0 0 chr6 171304163 171304465 -17975089 - AluSq SINE Alu -11 302 1 516 234 47 0 chr6 171304523 171304651 -17974903 - MIR SINE MIR -54 208 75 586 235 2 4 chr6 171304651 171304800 -17974754 + L1MA4 LINE L1 5987 6143 -157 2012 82 0 0 chr6 171304802 171305058 -17974496 + AluY SINE Alu 56 311 0 382 207 9 9 chr6 171305062 171305173 -17974381 + L1MA4 LINE L1 6186 6296 -4 908 167 6 6 chr6 171305385 171305547 -17974007 - FRAM SINE Alu -15 161 1 243 0 0 0 chr6 171305560 171305587 -17973967 + (TA)n Simple_repeat Simple_repeat 1 27 0 2238 105 0 6 chr6 171305587 171305896 -17973658 - AluSx SINE Alu -5 307 1 2090 102 3 25 chr6 171305933 171306248 -17973306 + AluSg SINE Alu 1 308 -2 2199 107 3 0 chr6 171306632 171306940 -17972614 - AluSp SINE Alu 0 313 5 2303 92 0 0 chr6 171307328 171307632 -17971922 + AluSx SINE Alu 1 304 -8 2188 94 7 13 chr6 171308310 171308618 -17970936 + AluSg SINE Alu 1 306 -4 2402 60 3 0 chr6 171308902 171309204 -17970350 - AluSp SINE Alu -10 303 1 2729 128 27 10 chr6 171309306 171309719 -17969835 - MSTA LTR MaLR -8 420 1 1445 63 0 5 chr6 171309833 171310022 -17969532 - L1PA5 LINE L1 -7 6147 5960 2225 111 0 3 chr6 171311019 171311316 -17968238 + AluSq SINE Alu 1 296 -17 247 309 45 73 chr6 171311638 171311748 -17967806 - L2 LINE L2 -8 3264 3158 28 0 0 26 chr6 171311825 171311843 -17967711 + AT_rich Low_complexity Low_complexity 1 18 -20 2377 95 0 3 chr6 171311843 171312137 -17967417 - AluSg SINE Alu -17 293 1 28 0 0 26 chr6 171312137 171312157 -17967397 + AT_rich Low_complexity Low_complexity 18 38 0 1241 227 64 87 chr6 171312614 171312691 -17966863 + LTR41 LTR ERVL 1 78 -695 1451 135 0 0 chr6 171312691 171312929 -17966625 - AluSg/x SINE Alu 0 319 82 2233 112 7 0 chr6 171312930 171313225 -17966329 - AluSx SINE Alu -15 297 1 1241 227 64 87 chr6 171313225 171313713 -17965841 + LTR41 LTR ERVL 78 623 -150 2263 91 44 0 chr6 171313713 171314011 -17965543 - AluSp SINE Alu -2 311 1 1241 227 64 87 chr6 171314011 171314158 -17965396 + LTR41 LTR ERVL 623 772 -1 324 206 32 0 chr6 171314241 171314304 -17965250 + L1ME4a LINE L1 6054 6118 -3 1911 124 28 0 chr6 171314427 171314709 -17964845 + AluSx SINE Alu 1 290 -22 577 279 74 23 chr6 171315096 171315487 -17964067 + LTR16B LTR ERVL 54 464 0 2438 63 3 3 chr6 171315657 171315958 -17963596 + AluSp SINE Alu 1 301 -12 187 51 0 51 chr6 171316326 171316365 -17963189 + (CGGGG)n Simple_repeat Simple_repeat 2 38 0 27 0 0 0 chr6 171316664 171316691 -17962863 + GC_rich Low_complexity Low_complexity 1 27 0 240 263 122 78 chr6 171318140 171318395 -17961159 + L2 LINE L2 2817 3082 -190 557 303 73 0 chr6 171318449 171318627 -17960927 + MER91A DNA MER1_type 5 195 -1 1995 149 10 0 chr6 171318730 171319038 -17960516 - AluJb SINE Alu -1 311 1 525 283 68 23 chr6 171319767 171319944 -17959610 - MIR3 SINE MIR 0 208 24 278 319 0 0 chr6 171320044 171320113 -17959441 + L2 LINE L2 3245 3313 0 216 0 0 0 chr6 171320302 171320326 -17959228 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2287 75 21 0 chr6 171320326 171320607 -17958947 - AluSx SINE Alu -25 287 1 22 35 0 0 chr6 171320610 171320639 -17958915 + AT_rich Low_complexity Low_complexity 1 29 0 212 296 216 11 chr6 171320663 171320771 -17958783 + MIR SINE MIR 1 86 -176 2359 85 0 20 chr6 171320771 171321077 -17958477 - AluSg SINE Alu -10 300 1 212 296 216 11 chr6 171321077 171321144 -17958410 + MIR SINE MIR 86 212 -50 2372 74 20 0 chr6 171321353 171321649 -17957905 + AluSp SINE Alu 1 302 -11 245 315 107 55 chr6 171321754 171321806 -17957748 - L2 LINE L2 -574 2740 2692 2134 139 3 0 chr6 171321806 171322107 -17957447 + AluSx SINE Alu 4 305 -7 245 315 107 55 chr6 171322107 171322362 -17957192 - L2 LINE L2 -622 2692 2417 265 270 101 11 chr6 171322379 171322468 -17957086 - MIR SINE MIR -164 98 2 21 36 0 0 chr6 171323078 171323106 -17956448 + AT_rich Low_complexity Low_complexity 1 28 0 317 288 12 104 chr6 171323128 171323227 -17956327 + MIR SINE MIR 112 192 -70 1977 161 0 7 chr6 171323227 171323525 -17956029 + AluJb SINE Alu 1 296 -16 317 288 12 104 chr6 171323525 171323588 -17955966 + MIR SINE MIR 192 259 -3 1942 131 3 44 chr6 171323774 171324094 -17955460 - AluSq SINE Alu 0 308 1 1172 142 0 0 chr6 171324433 171324595 -17954959 + AluSg/x SINE Alu 134 295 -15 1104 115 0 7 chr6 171324890 171325038 -17954516 + AluSq SINE Alu 92 238 -75 994 106 8 0 chr6 171325144 171325276 -17954278 - AluSq/x SINE Alu -180 133 1 2274 99 0 13 chr6 171325490 171325794 -17953760 - AluY SINE Alu -11 300 1 2358 119 0 0 chr6 171326428 171326739 -17952815 - AluSx SINE Alu 0 312 2 2312 103 20 0 chr6 171326749 171327050 -17952504 - AluSq SINE Alu -6 307 1 210 318 220 8 chr6 171327285 171327417 -17952137 - L2 LINE L2 -18 3254 3095 2062 107 9 50 chr6 171327490 171327809 -17951745 + AluSg SINE Alu 4 309 -1 2198 102 3 7 chr6 171327809 171328091 -17951463 - AluSq SINE Alu -31 282 1 352 111 0 0 chr6 171328091 171328145 -17951409 - AluJo SINE Alu -167 135 82 982 66 0 0 chr6 171328473 171328594 -17950960 - AluY SINE Alu 0 311 191 21 0 0 0 chr6 171329690 171329711 -17949843 + AT_rich Low_complexity Low_complexity 1 21 0 337 100 0 0 chr6 171329712 171329762 -17949792 - MER66B LTR ERV1 -142 344 295 702 200 26 92 chr6 171330096 171330192 -17949362 - MER5A DNA MER1_type 0 189 111 2066 158 0 0 chr6 171330192 171330502 -17949052 - AluSx SINE Alu -2 310 1 702 200 26 92 chr6 171330502 171330600 -17948954 - MER5A DNA MER1_type -78 111 8 216 264 0 0 chr6 171330893 171330946 -17948608 + MIR3 SINE MIR 151 203 -5 1822 151 60 0 chr6 171330952 171331236 -17948318 - AluSx SINE Alu -11 301 1 2382 79 16 0 chr6 171331546 171331851 -17947703 - AluSp SINE Alu -3 310 1 594 28 0 0 chr6 171331885 171331957 -17947597 - AluS SINE Alu -212 101 30 1580 91 5 0 chr6 171331961 171332159 -17947395 + AluSp SINE Alu 99 297 -16 2328 96 0 13 chr6 171333635 171333947 -17945607 - AluSx SINE Alu 0 312 5 254 248 188 26 chr6 171334012 171334129 -17945425 - MIR3 SINE MIR 0 208 73 200 320 0 0 chr6 171334534 171334584 -17944970 - L2 LINE L2 -13 3259 3210 181 274 20 0 chr6 171334659 171334710 -17944844 - MIR SINE MIR -194 68 17 324 0 0 0 chr6 171335018 171335054 -17944500 + (CA)n Simple_repeat Simple_repeat 2 37 0 499 339 77 27 chr6 171336272 171336750 -17942804 - L2 LINE L2 -817 2497 1996 2375 108 0 6 chr6 171336755 171337069 -17942485 + AluSx SINE Alu 1 312 0 716 317 108 0 chr6 171337113 171337419 -17942135 + L1MC/D LINE L1 5458 5796 -2012 2267 117 3 7 chr6 171337717 171338024 -17941530 + AluSx SINE Alu 1 306 -6 2455 82 3 0 chr6 171338600 171338903 -17940651 - AluY SINE Alu -7 304 1 841 170 18 147 chr6 171338991 171339192 -17940362 + MER33 DNA MER1_type 18 243 -2381 1020 135 19 6 chr6 171339192 171339348 -17940206 + FRAM SINE Alu 1 158 -8 841 170 18 147 chr6 171339348 171339454 -17940100 + MER33 DNA MER1_type 243 320 -2304 1640 144 72 4 chr6 171339454 171339732 -17939822 + AluSx SINE Alu 1 297 -15 841 170 18 147 chr6 171339732 171339752 -17939802 + MER33 DNA MER1_type 320 341 -22 900 74 0 0 chr6 171339757 171339878 -17939676 + (TCCCC)n Simple_repeat Simple_repeat 1 121 0 1919 110 0 4 chr6 171339898 171340153 -17939401 + AluSx SINE Alu 41 294 -18 2236 127 7 0 chr6 171340155 171340463 -17939091 + AluSx SINE Alu 1 310 -2 547 146 0 11 chr6 171390470 171390583 -17888971 + AluSg/x SINE Alu 196 307 0 800 73 0 9 chr6 171390951 171391090 -17888464 - AluSc SINE Alu 0 312 175 1558 178 7 13 chr6 171392064 171392373 -17887181 + AluJo SINE Alu 1 307 -5 31 0 0 0 chr6 171392465 171392496 -17887058 + AT_rich Low_complexity Low_complexity 1 31 0 1760 102 0 0 chr6 171392546 171392791 -17886763 - AluSg/x SINE Alu -2 310 66 1998 109 9 50 chr6 171393060 171393382 -17886172 - AluSg SINE Alu 0 310 2 413 285 91 63 chr6 171393391 171393644 -17885910 - HAL1 LINE L1 -1453 1054 795 204 122 0 0 chr6 171393862 171393903 -17885651 + (T)n Simple_repeat Simple_repeat 1 41 0 2166 106 7 0 chr6 171394353 171394656 -17884898 - AluSx SINE Alu -7 305 1 2016 115 0 16 chr6 171395196 171395501 -17884053 - AluSx SINE Alu -12 300 1 712 30 20 0 chr6 171395672 171395771 -17883783 + (GA)n Simple_repeat Simple_repeat 1 101 0 1650 106 73 18 chr6 171396794 171397068 -17882486 + AluSx SINE Alu 1 289 -23 1504 126 76 18 chr6 171397119 171397396 -17882158 - L1MA8 LINE L1 -17 6274 5982 318 341 96 18 chr6 171397436 171397669 -17881885 - MIR SINE MIR -1 261 5 372 250 60 10 chr6 171397711 171397811 -17881743 + MER5B DNA MER1_type 1 105 -73 1908 138 0 16 chr6 171397811 171398122 -17881432 + AluJb SINE Alu 1 306 -6 281 269 130 0 chr6 171398212 171398320 -17881234 - MIR3 SINE MIR -48 160 39 251 293 82 0 chr6 171398650 171398763 -17880791 - MIR SINE MIR -95 113 14 1802 100 20 0 chr6 171398999 171399250 -17880304 + AluSq SINE Alu 1 256 -57 246 294 128 0 chr6 171399572 171399674 -17879880 - L2 LINE L2 -3 3310 3196 2017 114 0 23 chr6 171399768 171400076 -17879478 - AluSq SINE Alu -5 308 8 2108 97 17 0 chr6 171400627 171400917 -17878637 + AluSq SINE Alu 1 295 -18 321 312 57 64 chr6 171400987 171401217 -17878337 + MIR SINE MIR 8 244 -18 1156 105 37 0 chr6 171402241 171402403 -17877151 + AluSq SINE Alu 1 168 -145 1889 145 3 3 chr6 171403466 171403769 -17875785 + AluSx SINE Alu 1 303 -9 734 134 118 0 chr6 171404174 171404293 -17875261 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr6 171404293 171404314 -17875240 + AT_rich Low_complexity Low_complexity 1 21 0 1130 183 0 0 chr6 171404323 171404520 -17875034 + AluSx SINE Alu 10 206 -106 2013 138 3 0 chr6 171404620 171404925 -17874629 + AluSx SINE Alu 3 308 -4 3029 154 41 26 chr6 171404975 171405511 -17874043 + L1MB3 LINE L1 5587 6135 -48 2111 96 3 0 chr6 171405511 171405817 -17873737 + AluSp SINE Alu 1 307 0 3029 154 41 26 chr6 171405817 171405865 -17873689 + L1MB3 LINE L1 6135 6181 -2 839 156 0 0 chr6 171406947 171407069 -17872485 + FLAM_A SINE Alu 1 122 -11 195 129 0 0 chr6 171407103 171407134 -17872420 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 1724 155 0 23 chr6 171407639 171407948 -17871606 + AluJo SINE Alu 1 302 -10 247 360 0 0 chr6 171409511 171409625 -17869929 + MIR SINE MIR 118 231 -31 1456 208 43 32 chr6 171409702 171410072 -17869482 - MLT1A2 LTR MaLR 0 374 1 1830 122 50 0 chr6 171410144 171410423 -17869131 + AluSx SINE Alu 6 298 -14 2194 99 3 0 chr6 171410638 171410940 -17868614 - AluSx SINE Alu -9 303 1 21 0 0 0 chr6 171411326 171411347 -17868207 + AT_rich Low_complexity Low_complexity 1 21 0 253 290 0 124 chr6 171411481 171411674 -17867880 - L3b LINE CR1 -254 1329 1161 1802 119 32 4 chr6 171412134 171412449 -17867105 + AluSx SINE Alu 1 312 0 38 0 0 0 chr6 171412471 171412509 -17867045 + AT_rich Low_complexity Low_complexity 1 38 0 1450 147 17 0 chr6 171412536 171412774 -17866780 - L1MA9 LINE L1 -179 6133 5892 1917 80 80 14 chr6 171412792 171413068 -17866486 - AluSp SINE Alu -9 304 11 2389 87 0 6 chr6 171413755 171414066 -17865488 - AluSc SINE Alu 0 309 1 2467 90 3 0 chr6 171414974 171415284 -17864270 + AluSp SINE Alu 1 311 -2 2159 110 3 0 chr6 171415348 171415630 -17863924 - AluSq SINE Alu -25 288 6 2005 151 0 13 chr6 171416891 171417202 -17862352 - AluSx SINE Alu -5 307 1 3390 41 0 10 chr6 171417493 171417905 -17861649 - L1PA6 LINE L1 0 6154 5747 274 268 47 31 chr6 171418574 171418701 -17860853 + L3 LINE CR1 755 883 -694 2203 99 7 0 chr6 171418719 171419026 -17860528 + AluSq SINE Alu 1 309 0 231 36 0 0 chr6 171419608 171419636 -17859918 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 396 0 0 0 chr6 171419635 171419679 -17859875 + (GA)n Simple_repeat Simple_repeat 1 44 0 277 325 160 0 chr6 171419710 171419910 -17859644 + L3 LINE CR1 1148 1379 -198 216 0 0 0 chr6 171420456 171420480 -17859074 + (CA)n Simple_repeat Simple_repeat 2 25 0 466 304 56 28 chr6 171422760 171422889 -17856665 + MIR SINE MIR 1 140 -122 2668 132 58 18 chr6 171422889 171423336 -17856218 + MER4C LTR ERV1 1 465 0 466 304 56 28 chr6 171423336 171423420 -17856134 + MIR SINE MIR 140 220 -42 1731 148 4 15 chr6 171425173 171425443 -17854111 + AluJo SINE Alu 17 283 -29 21 36 0 0 chr6 171425623 171425651 -17853903 + AT_rich Low_complexity Low_complexity 1 28 0 1891 116 0 81 chr6 171425652 171425982 -17853572 - AluSx SINE Alu 0 305 1 476 157 245 10 chr6 171425988 171426090 -17853464 - FLAM_C SINE Alu -16 127 2 1075 133 0 0 chr6 171426357 171426535 -17853019 - AluSg/x SINE Alu 0 309 132 2340 106 3 0 chr6 171426535 171426846 -17852708 - AluSx SINE Alu 0 312 1 424 288 158 14 chr6 171428039 171428254 -17851300 - LTR16A LTR ERVL -8 442 197 2158 115 7 0 chr6 171428702 171428997 -17850557 + AluSx SINE Alu 1 297 -15 1261 191 60 8 chr6 171429670 171429922 -17849632 - MLT1A1 LTR MaLR 0 365 101 457 159 37 75 chr6 171430497 171430604 -17848950 - MLT1A1 LTR MaLR -260 105 3 2339 95 7 0 chr6 171430893 171431197 -17848357 - AluSq SINE Alu 0 313 8 22 0 0 0 chr6 171431924 171431946 -17847608 + AT_rich Low_complexity Low_complexity 1 22 0 801 183 0 0 chr6 171432388 171432519 -17847035 + FLAM_C SINE Alu 3 133 0 2261 110 7 3 chr6 171432683 171432984 -17846570 - AluSx SINE Alu -10 302 1 25 0 0 0 chr6 171434187 171434212 -17845342 + AT_rich Low_complexity Low_complexity 1 25 0 1855 144 39 0 chr6 171434243 171434527 -17845027 - AluSx SINE Alu -17 295 1 2196 123 0 0 chr6 171434534 171434836 -17844718 - AluSx SINE Alu -10 302 1 190 297 117 0 chr6 171435164 171435275 -17844279 - L2 LINE L2 -217 3055 2932 2083 113 0 11 chr6 171435434 171435708 -17843846 + AluSx SINE Alu 1 271 -41 242 28 0 28 chr6 171435717 171435753 -17843801 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 195 129 0 0 chr6 171436495 171436526 -17843028 + (T)n Simple_repeat Simple_repeat 1 31 0 889 93 0 47 chr6 171436537 171436666 -17842888 - FLAM_C SINE Alu -8 125 3 307 220 58 7 chr6 171436715 171436820 -17842734 - MIR3 SINE MIR -101 107 15 1286 137 9 18 chr6 171437614 171437833 -17841721 - AluJb SINE Alu -10 302 86 1709 194 20 130 chr6 171439002 171439596 -17839958 - MLT2B1 LTR ERVL 0 463 2 1246 192 31 16 chr6 171439596 171439851 -17839703 + AluJb SINE Alu 52 310 -2 1032 179 41 15 chr6 171440270 171440466 -17839088 - AluJb SINE Alu -36 276 76 2325 100 0 31 chr6 171440618 171440939 -17838615 - AluSx SINE Alu -1 311 1 2078 148 7 0 chr6 171441009 171441319 -17838235 - AluJb SINE Alu 0 312 1 205 304 72 24 chr6 171441698 171441823 -17837731 - MER5A DNA MER1_type -20 169 39 * 296 263 54 0 chr6 171441727 171441838 -17837716 + MER5B DNA MER1_type 62 169 -9 189 0 0 0 chr6 171442962 171442983 -17836571 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 1602 130 11 58 chr6 171443023 171443299 -17836255 - AluSq SINE Alu -14 299 37 1858 154 41 0 chr6 171444579 171444871 -17834683 + AluJb SINE Alu 1 304 -8 262 246 85 39 chr6 171445148 171445278 -17834276 - MIR SINE MIR -70 192 57 2229 120 10 0 chr6 171445373 171445682 -17833872 - AluSx SINE Alu 0 312 1 2134 134 0 0 chr6 171446285 171446583 -17832971 - AluSx SINE Alu -14 298 1 180 0 0 0 chr6 171446585 171446605 -17832949 + (TTTAA)n Simple_repeat Simple_repeat 4 23 0 646 139 0 82 chr6 171446724 171446846 -17832708 - FLAM_C SINE Alu -19 124 13 237 250 14 0 chr6 171447249 171447321 -17832233 - L1ME4a LINE L1 -93 6028 5956 252 0 0 0 chr6 171447411 171447439 -17832115 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1890 114 4 0 chr6 171447444 171447698 -17831856 - AluSx SINE Alu -37 275 21 2517 65 3 0 chr6 171448045 171448355 -17831199 - AluY SINE Alu 0 311 1 2232 113 0 0 chr6 171448886 171449178 -17830376 - AluSg SINE Alu -18 292 1 1417 181 106 4 chr6 171449409 171449674 -17829880 + AluSg SINE Alu 1 292 -18 21 0 0 0 chr6 171451171 171451192 -17828362 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr6 171451703 171451749 -17827805 + (TA)n Simple_repeat Simple_repeat 2 47 0 240 35 0 0 chr6 171451749 171451778 -17827776 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr6 171452146 171452169 -17827385 + AT_rich Low_complexity Low_complexity 1 23 0 306 67 0 0 chr6 171452231 171452276 -17827278 + (TG)n Simple_repeat Simple_repeat 2 46 0 299 354 9 24 chr6 171453197 171453409 -17826145 + MIR SINE MIR 4 212 -50 2266 99 7 0 chr6 171453437 171453730 -17825824 - AluSx SINE Alu -17 295 1 2387 94 0 0 chr6 171455296 171455595 -17823959 - AluSx SINE Alu -13 299 1 2200 71 44 10 chr6 171456954 171457251 -17822303 + AluY SINE Alu 1 307 -4 1886 152 0 3 chr6 171457629 171457937 -17821617 - AluSx SINE Alu 0 307 1 2251 76 3 24 chr6 171459060 171459368 -17820186 + AluSp SINE Alu 1 302 0 2356 84 0 19 chr6 171459662 171459972 -17819582 - AluSx SINE Alu -6 306 3 2252 162 6 110 chr6 171460520 171460756 -17818798 - L1MB2 LINE L1 -2 6169 5934 904 259 26 58 chr6 171460756 171461103 -17818451 - L1ME1 LINE L1 -185 5981 5646 2768 159 159 24 chr6 171461698 171461873 -17817681 - L1MC3 LINE L1 -219 7566 7416 1818 165 3 34 chr6 171461873 171462194 -17817360 - AluJb SINE Alu -1 311 1 2768 159 159 24 chr6 171462194 171462397 -17817157 - L1MC3 LINE L1 -369 7416 7242 2236 122 3 0 chr6 171462397 171462701 -17816853 - AluSx SINE Alu -7 305 1 2768 159 159 24 chr6 171462701 171463080 -17816474 - L1MC3 LINE L1 -543 7242 6647 388 268 31 10 chr6 171463140 171463237 -17816317 + MER5B DNA MER1_type 67 165 -13 187 357 0 0 chr6 171463292 171463348 -17816206 - L2 LINE L2 -8 3264 3209 383 300 105 27 chr6 171463386 171463630 -17815924 - MIR SINE MIR 0 262 1 279 333 0 82 chr6 171463749 171463896 -17815658 - L2 LINE L2 -182 3090 2956 4937 203 65 161 chr6 171463896 171464138 -17815416 - L1MC4 LINE L1 -258 7784 7520 399 73 0 0 chr6 171464138 171464193 -17815361 + (TG)n Simple_repeat Simple_repeat 2 56 0 1870 133 29 0 chr6 171464193 171464471 -17815083 - AluSx SINE Alu -26 286 1 4937 203 65 161 chr6 171464471 171464682 -17814872 - L1MC4 LINE L1 -521 7521 7291 599 203 8 0 chr6 171464682 171464800 -17814754 - MLT1F1 LTR MaLR -448 119 1 4937 203 65 161 chr6 171464800 171464978 -17814576 - L1MC4 LINE L1 -751 7291 7098 2399 80 10 0 chr6 171464978 171465279 -17814275 + AluSp SINE Alu 1 304 -9 4937 203 65 161 chr6 171465279 171465469 -17814085 - L1MC4 LINE L1 -944 7098 6891 2133 105 11 0 chr6 171465469 171465754 -17813800 + AluSq SINE Alu 1 288 -25 4937 203 65 161 chr6 171465754 171467421 -17812133 - L1MC4 LINE L1 -1151 6891 5469 2286 104 13 0 chr6 171467421 171467730 -17811824 - AluSq SINE Alu 0 313 1 4937 203 65 161 chr6 171467730 171467990 -17811564 - L1MC4 LINE L1 -2573 5469 5186 449 181 43 52 chr6 171468303 171468357 -17811197 + L1ME3 LINE L1 6048 6101 -61 2290 113 0 3 chr6 171468357 171468658 -17810896 + AluSc SINE Alu 1 300 -9 449 181 43 52 chr6 171468658 171468719 -17810835 + L1ME3 LINE L1 6101 6162 0 302 270 54 0 chr6 171469657 171469768 -17809786 + CT-rich Low_complexity Low_complexity 4 120 0 2085 121 14 0 chr6 171469813 171470110 -17809444 - AluSq SINE Alu -12 301 1 1736 140 41 0 chr6 171470352 171470623 -17808931 + AluSx SINE Alu 1 282 -30 375 115 0 0 chr6 171471031 171471083 -17808471 - Alu SINE Alu -250 52 1 1895 122 0 4 chr6 171471606 171471885 -17807669 - AluSx SINE Alu 0 306 29 210 37 0 0 chr6 171472485 171472512 -17807042 + (ATG)n Simple_repeat Simple_repeat 2 28 0 1879 136 3 7 chr6 171472512 171472798 -17806756 - AluJb SINE Alu -27 285 1 1894 78 7 78 chr6 171473299 171473583 -17805971 - AluSx SINE Alu -18 294 31 290 160 0 0 chr6 171473627 171473677 -17805877 - FLAM_A SINE Alu 0 133 84 986 188 0 6 chr6 171473779 171473939 -17805615 - AluJb SINE Alu -17 295 137 1990 164 3 0 chr6 171473939 171474250 -17805304 - AluSx SINE Alu 0 312 1 2026 142 23 0 chr6 171474759 171475062 -17804492 - AluSx SINE Alu -2 310 1 2339 94 13 0 chr6 171475066 171475373 -17804181 - AluSx SINE Alu -1 311 1 1629 187 0 7 chr6 171475751 171476045 -17803509 + AluJb SINE Alu 6 297 -15 2248 89 36 3 chr6 171476479 171476782 -17802772 + AluSq SINE Alu 1 313 0 254 317 61 18 chr6 171476992 171477156 -17802398 - L2 LINE L2 -499 2815 2645 2486 85 0 0 chr6 171478013 171478319 -17801235 - AluSx SINE Alu -6 306 1 28 0 0 0 chr6 171479159 171479187 -17800367 + AT_rich Low_complexity Low_complexity 1 28 0 2117 128 16 0 chr6 171479199 171479504 -17800050 - AluSx SINE Alu -2 310 1 291 65 152 0 chr6 171479684 171479730 -17799824 + Alu SINE Alu 250 302 0 2755 156 89 8 chr6 171480412 171480918 -17798636 - Tigger4(Zombi) DNA MER2_type -1 2730 2184 667 103 0 0 chr6 171480921 171481008 -17798546 - Tigger4(Zombi) DNA MER2_type -2595 136 50 2100 123 0 26 chr6 171481544 171481852 -17797702 - AluSx SINE Alu -12 300 1 22 0 0 0 chr6 171482034 171482056 -17797498 + AT_rich Low_complexity Low_complexity 1 22 0 272 323 67 31 chr6 171482510 171482705 -17796849 - MIR SINE MIR -6 256 55 1858 143 50 4 chr6 171482923 171483202 -17796352 - AluJb SINE Alu -20 292 1 2215 115 0 0 chr6 171483911 171484216 -17795338 - AluSx SINE Alu -5 307 3 2150 139 0 3 chr6 171484521 171484823 -17794731 + AluSx SINE Alu 1 301 -11 2234 100 17 0 chr6 171485298 171485589 -17793965 - AluSg SINE Alu -14 296 1 1859 167 3 0 chr6 171486918 171487205 -17792349 + AluJb SINE Alu 1 288 -24 2221 112 3 10 chr6 171487225 171487519 -17792035 + AluSp SINE Alu 1 292 -21 396 0 0 0 chr6 171487523 171487567 -17791987 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2256 116 0 3 chr6 171487922 171488225 -17791329 + AluSx SINE Alu 1 302 -10 507 250 97 36 chr6 171488736 171488932 -17790622 - MLT1G LTR MaLR -373 217 10 303 286 0 13 chr6 171489180 171489257 -17790297 + L2 LINE L2 3194 3269 -3 360 254 141 21 chr6 171491101 171491243 -17788311 + MIR3 SINE MIR 43 201 -7 2335 113 0 0 chr6 171491279 171491579 -17787975 + AluSx SINE Alu 1 300 -12 186 304 43 29 chr6 171491707 171491776 -17787778 - L2 LINE L2 -2 3270 3201 293 274 167 0 chr6 171491953 171492055 -17787499 - L2 LINE L2 -236 3036 2918 2296 95 0 0 chr6 171492321 171492637 -17786917 + AluSx SINE Alu 1 316 0 322 279 173 0 chr6 171492743 171492847 -17786707 + MIR3 SINE MIR 76 197 -11 2342 65 3 77 chr6 171492899 171493235 -17786319 - AluSp SINE Alu -2 311 1 410 319 76 9 chr6 171493336 171493546 -17786008 - MIR SINE MIR -18 244 21 1399 134 36 5 chr6 171493550 171493773 -17785781 - MER30 DNA MER1_type 0 230 1 1914 123 48 0 chr6 171494092 171494361 -17785193 - AluSx SINE Alu -30 282 1 363 311 113 16 chr6 171494505 171494762 -17784792 + L2 LINE L2 3006 3287 -26 297 183 0 0 chr6 171494773 171494833 -17784721 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 383 319 83 28 chr6 171495955 171496281 -17783273 + L2 LINE L2 2970 3313 0 21 36 0 0 chr6 171496470 171496498 -17783056 + AT_rich Low_complexity Low_complexity 1 28 0 299 213 13 40 chr6 171496681 171496756 -17782798 + MIR SINE MIR 32 104 -158 1765 152 0 4 chr6 171496763 171497040 -17782514 - AluJb SINE Alu -23 289 14 1324 162 0 0 chr6 171497042 171497246 -17782308 - AluJo SINE Alu -102 210 7 286 255 69 0 chr6 171497250 171497352 -17782202 + MIR SINE MIR 92 200 -62 27 61 0 15 chr6 171497395 171497442 -17782112 + AT_rich Low_complexity Low_complexity 1 48 -17 2318 82 4 0 chr6 171497442 171497721 -17781833 + AluSp SINE Alu 15 294 -19 27 61 0 15 chr6 171497721 171497739 -17781815 + AT_rich Low_complexity Low_complexity 48 65 0 534 286 57 29 chr6 171497948 171498158 -17781396 + MIR SINE MIR 32 247 -15 378 384 41 21 chr6 171498218 171498637 -17780917 + L3 LINE CR1 1132 1558 -19 806 296 22 80 chr6 171498824 171499361 -17780193 + Charlie8 DNA MER1_type 1 506 -1911 1270 176 27 101 chr6 171499401 171499737 -17779817 - AluYb8 SINE Alu -7 311 1 492 303 74 37 chr6 171500224 171500574 -17778980 + L3 LINE CR1 1212 1574 -3 6902 153 13 25 chr6 171501071 171502195 -17777359 - L1MA4 LINE L1 -5 6295 5216 1843 173 3 0 chr6 171502195 171502495 -17777059 - AluJo SINE Alu -11 301 1 6902 153 13 25 chr6 171502495 171503606 -17775948 - L1MA4 LINE L1 -1084 5216 4093 2241 88 3 7 chr6 171503760 171504044 -17775510 + AluSp SINE Alu 1 283 -30 390 91 0 0 chr6 171504061 171504116 -17775438 + (TG)n Simple_repeat Simple_repeat 2 56 0 2103 150 24 0 chr6 171504600 171504939 -17774615 - MER7A DNA MER2_type -1 345 1 380 288 14 58 chr6 171505431 171505570 -17773984 - L2 LINE L2 0 3313 3181 * 441 300 29 0 chr6 171505565 171505705 -17773849 - MIR SINE MIR -37 225 82 235 234 0 0 chr6 171505706 171505753 -17773801 - MIR SINE MIR -135 127 81 1894 110 37 11 chr6 171506562 171506855 -17772699 - AluSc SINE Alu 0 300 1 1784 170 24 14 chr6 171506855 171507144 -17772410 - AluSx SINE Alu -20 292 1 22 0 0 0 chr6 171507354 171507376 -17772178 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr6 171507622 171507665 -17771889 + (TG)n Simple_repeat Simple_repeat 2 44 0 253 286 27 9 chr6 171507688 171507800 -17771754 - L1MC4 LINE L1 -1 8041 7928 2568 76 0 0 chr6 171508296 171508600 -17770954 + AluSx SINE Alu 1 304 -8 316 273 68 30 chr6 171509048 171509180 -17770374 + MIR3 SINE MIR 68 204 -4 2365 75 3 0 chr6 171509331 171509626 -17769928 + AluY SINE Alu 1 296 -15 1415 145 5 9 chr6 171509819 171510040 -17769514 - AluJb SINE Alu -20 292 73 1664 156 42 0 chr6 171510040 171510303 -17769251 - AluSx SINE Alu -38 274 1 1117 139 133 105 chr6 171510311 171510605 -17768949 - AluJo SINE Alu 0 302 1 2081 124 7 0 chr6 171510830 171511159 -17768395 - AluSx SINE Alu 0 331 1 2560 65 0 3 chr6 171513832 171514138 -17765416 - AluY SINE Alu -6 305 1 340 267 151 14 chr6 171514523 171514669 -17764885 - MIR3 SINE MIR -2 206 41 2314 95 7 13 chr6 171514801 171515107 -17764447 - AluSq SINE Alu -9 304 1 188 196 0 36 chr6 171515143 171515199 -17764355 + CT-rich Low_complexity Low_complexity 1 54 0 360 0 0 0 chr6 171516153 171516193 -17763361 + (CA)n Simple_repeat Simple_repeat 2 41 0 1721 256 135 58 chr6 171516492 171516973 -17762581 + L2 LINE L2 1533 1976 -1337 2384 67 17 13 chr6 171516973 171517271 -17762283 - AluSx SINE Alu -5 307 9 1721 256 135 58 chr6 171517271 171518294 -17761260 + L2 LINE L2 1976 3156 -157 2088 116 3 10 chr6 171518294 171518586 -17760968 + AluSq SINE Alu 1 290 -23 1721 256 135 58 chr6 171518586 171518757 -17760797 + L2 LINE L2 3156 3312 -1 207 0 0 0 chr6 171518870 171518893 -17760661 + (TA)n Simple_repeat Simple_repeat 2 24 0 2190 128 0 3 chr6 171518897 171519210 -17760344 - AluSx SINE Alu 0 312 1 25 0 0 0 chr6 171519670 171519695 -17759859 + AT_rich Low_complexity Low_complexity 1 25 0 2259 100 0 0 chr6 171519695 171519984 -17759570 - AluSx SINE Alu -23 289 1 771 175 0 0 chr6 171520083 171520209 -17759345 - AluJo SINE Alu -178 134 9 1759 146 3 35 chr6 171520217 171520504 -17759050 + AluJb SINE Alu 1 278 -34 1849 129 57 4 chr6 171520692 171520971 -17758583 + AluSx SINE Alu 1 294 -18 22 0 0 0 chr6 171521900 171521922 -17757632 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 171522037 171522067 -17757487 + AT_rich Low_complexity Low_complexity 1 30 0 290 98 24 0 chr6 171522067 171522108 -17757446 - MER57A LTR ERV1 -67 336 295 2164 110 0 0 chr6 171522317 171522598 -17756956 - AluSx SINE Alu -31 281 1 2289 112 0 6 chr6 171523238 171523590 -17755964 - AluSx SINE Alu 0 350 1 180 77 0 0 chr6 171523868 171523894 -17755660 + (TTCCC)n Simple_repeat Simple_repeat 1 26 0 2339 88 7 0 chr6 171523894 171524190 -17755364 - AluSx SINE Alu -14 298 1 1973 148 10 0 chr6 171524197 171524494 -17755060 - AluSx SINE Alu -12 300 1 500 252 24 100 chr6 171524620 171524870 -17754684 + MER112 DNA MER1_type 15 245 -15 1051 189 37 28 chr6 171525532 171525749 -17753805 - MER20 DNA MER1_type 0 219 1 29 28 0 0 chr6 171525949 171525985 -17753569 + AT_rich Low_complexity Low_complexity 1 36 0 371 296 40 45 chr6 171526204 171526380 -17753174 - MIR SINE MIR -41 221 47 24 0 0 0 chr6 171527455 171527479 -17752075 + AT_rich Low_complexity Low_complexity 1 24 0 1816 137 3 43 chr6 171528877 171529176 -17750378 - AluSx SINE Alu -25 287 1 2323 94 3 3 chr6 171529187 171529486 -17750068 - AluSp SINE Alu -14 299 1 26 0 0 0 chr6 171529716 171529742 -17749812 + AT_rich Low_complexity Low_complexity 1 26 0 275 125 0 0 chr6 171529865 171529905 -17749649 + Alu SINE Alu 254 293 -7 3591 157 34 97 chr6 171529919 171530178 -17749376 + L1MB4 LINE L1 5349 5623 -557 2143 137 3 0 chr6 171530178 171530485 -17749069 + AluSx SINE Alu 1 308 -4 3591 157 34 97 chr6 171530485 171531071 -17748483 + L1MB4 LINE L1 5623 6141 -39 2241 80 3 24 chr6 171531071 171531379 -17748175 + AluSp SINE Alu 1 302 0 2391 78 0 19 chr6 171531671 171531980 -17747574 - AluSx SINE Alu -7 305 3 2252 162 6 110 chr6 171532528 171532764 -17746790 - L1MB2 LINE L1 -2 6169 5934 904 259 26 58 chr6 171532764 171533111 -17746443 - L1ME1 LINE L1 -185 5981 5646 487 197 0 83 chr6 171533545 171533677 -17745877 + FLAM_A SINE Alu 2 122 -11 440 123 0 0 chr6 171533873 171533938 -17745616 + AluSc SINE Alu 171 235 -74 759 187 0 8 chr6 171534037 171534171 -17745383 - FLAM_A SINE Alu 0 133 1 2250 127 0 0 chr6 171535055 171535362 -17744192 - AluSx SINE Alu -5 307 1 2235 116 7 0 chr6 171536197 171536500 -17743054 - AluSx SINE Alu -7 305 1 22 0 0 0 chr6 171536512 171536534 -17743020 + AT_rich Low_complexity Low_complexity 1 22 0 450 0 0 0 chr6 171536564 171536614 -17742940 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 637 250 82 29 chr6 171537323 171537603 -17741951 + LTR16C LTR ERVL 195 489 -2 195 279 0 15 chr6 171538510 171538578 -17740976 - MER5A DNA MER1_type -1 188 122 2420 86 7 0 chr6 171538647 171538951 -17740603 - AluSp SINE Alu -7 306 1 506 248 149 33 chr6 171542242 171542456 -17737098 + MIR SINE MIR 13 251 -11 2241 119 0 10 chr6 171542583 171542895 -17736659 + AluSx SINE Alu 1 309 -3 1566 167 185 31 chr6 171542956 171543339 -17736215 + MLT1D LTR MaLR 1 442 -63 246 344 57 33 chr6 171543344 171543466 -17736088 - L2 LINE L2 -36 3236 3112 5072 197 117 23 chr6 171543489 171544196 -17735358 - Charlie1a DNA MER1_type -1309 1452 812 1936 138 7 3 chr6 171544196 171544486 -17735068 + AluJb SINE Alu 1 291 -21 5072 197 117 23 chr6 171544486 171545106 -17734448 - Charlie1a DNA MER1_type -1949 812 1 2551 93 33 8 chr6 171545831 171546197 -17733357 + THE1C LTR MaLR 1 375 0 673 269 167 34 chr6 171546523 171547394 -17732160 - L2 LINE L2 -9 3304 2346 455 175 19 39 chr6 171547516 171547619 -17731935 - MER90 LTR ERV1 -172 442 342 559 275 136 27 chr6 171548400 171548616 -17730938 + Tigger8 DNA MER2_type 192 460 -206 2692 102 11 0 chr6 171548616 171548987 -17730567 - THE1C LTR MaLR 0 375 1 559 275 136 27 chr6 171548987 171549108 -17730446 + Tigger8 DNA MER2_type 460 566 -100 210 279 0 33 chr6 171549365 171549426 -17730128 + L2 LINE L2 3209 3267 -5 2377 87 3 13 chr6 171549454 171549764 -17729790 + AluSp SINE Alu 1 307 -6 2171 95 22 44 chr6 171550136 171550451 -17729103 - AluSx SINE Alu -4 308 1 244 260 47 102 chr6 171550934 171551061 -17728493 - MIR SINE MIR -75 187 68 1951 122 10 100 chr6 171551533 171551696 -17727858 - L1MB7 LINE L1 -19 6165 5989 2297 113 0 0 chr6 171551696 171552005 -17727549 + AluSc SINE Alu 1 309 0 1951 122 10 100 chr6 171552005 171552251 -17727303 - L1MB7 LINE L1 -195 5989 5793 1669 161 0 35 chr6 171553505 171553791 -17725763 - AluJo SINE Alu -26 286 11 2093 125 12 47 chr6 171553829 171554150 -17725404 + AluSx SINE Alu 1 310 -2 222 292 0 0 chr6 171554384 171554449 -17725105 + MIR3 SINE MIR 137 201 -7 1314 253 136 46 chr6 171555019 171555732 -17723822 + MER20B DNA MER1_type 7 783 0 1186 177 147 68 chr6 171555870 171556237 -17723317 - MSTD LTR MaLR 0 396 1 342 0 0 0 chr6 171556256 171556294 -17723260 + (A)n Simple_repeat Simple_repeat 1 38 0 2127 99 42 0 chr6 171557324 171557608 -17721946 - AluY SINE Alu -15 296 1 270 241 17 0 chr6 171559127 171559185 -17720369 + L2 LINE L2 3187 3245 -27 216 306 156 33 chr6 171559477 171559752 -17719802 + L2 LINE L2 2170 2478 -836 285 298 0 0 chr6 171560307 171560391 -17719163 + L2 LINE L2 3229 3312 -1 230 191 21 32 chr6 171561272 171561366 -17718188 + T-rich Low_complexity Low_complexity 1 93 0 1582 172 6 56 chr6 171561391 171561710 -17717844 - AluJo SINE Alu -9 303 1 3222 179 60 12 chr6 171562781 171563446 -17716108 - L1MB4 LINE L1 -8 6172 5476 8452 178 70 31 chr6 171563672 171565361 -17714193 - MER52A LTR ERV1 0 1755 1 25 31 0 0 chr6 171565861 171565893 -17713661 + AT_rich Low_complexity Low_complexity 1 32 0 786 161 0 0 chr6 171565896 171566014 -17713540 - FLAM_C SINE Alu -15 118 1 39 0 0 0 chr6 171566778 171566817 -17712737 + AT_rich Low_complexity Low_complexity 1 39 0 1759 167 0 3 chr6 171566877 171567182 -17712372 - AluJb SINE Alu -8 304 1 334 316 48 30 chr6 171569481 171569649 -17709905 + MIR SINE MIR 20 192 -68 180 309 44 0 chr6 171571557 171571625 -17707929 + MIR SINE MIR 114 184 -78 1814 83 38 4 chr6 171571847 171572111 -17707443 - L1PA7 LINE L1 -8 6146 5874 25 51 0 0 chr6 171572184 171572223 -17707331 + AT_rich Low_complexity Low_complexity 1 39 0 2133 121 0 0 chr6 171573020 171573327 -17706227 - AluSx SINE Alu -5 307 1 2012 143 0 0 chr6 171573525 171573832 -17705722 + AluSx SINE Alu 5 311 -1 222 37 0 0 chr6 171574720 171574747 -17704807 + (T)n Simple_repeat Simple_repeat 1 27 0 1743 161 4 0 chr6 171576154 171576458 -17703096 - AluSx SINE Alu 0 305 1 2069 97 18 0 chr6 171577590 171577868 -17701686 + AluSq SINE Alu 1 283 -30 283 295 45 45 chr6 171578540 171578652 -17700902 - MIR SINE MIR -52 210 99 264 245 0 0 chr6 171579665 171579714 -17699840 + AluJ/monomer SINE Alu 1 49 -253 289 247 21 41 chr6 171580383 171580480 -17699074 + L2 LINE L2 3178 3272 0 273 295 205 38 chr6 171580575 171580785 -17698769 - MIR SINE MIR 0 262 18 2641 92 19 8 chr6 171580902 171581262 -17698292 - THE1B LTR MaLR 0 364 1 23 78 0 0 chr6 171581977 171582028 -17697526 + AT_rich Low_complexity Low_complexity 1 51 0 2076 102 3 30 chr6 171582039 171582344 -17697210 - AluSx SINE Alu -15 297 1 2079 121 0 19 chr6 171582999 171583313 -17696241 + AluSx SINE Alu 5 312 0 1725 148 34 14 chr6 171584889 171585186 -17694368 + AluJo SINE Alu 1 303 -9 477 239 231 0 chr6 171585503 171585637 -17693917 - AluJo/FRAM SINE Alu -1 301 137 239 170 21 0 chr6 171585637 171585684 -17693870 - AluJo/FRAM SINE Alu -166 136 89 1282 170 0 9 chr6 171585686 171585909 -17693645 - AluJb SINE Alu -91 221 1 314 257 37 0 chr6 171586170 171586279 -17693275 + (CAGAGA)n Simple_repeat Simple_repeat 2 114 0 320 318 56 4 chr6 171586463 171586620 -17692934 - MIR SINE MIR -77 185 20 938 156 0 0 chr6 171637028 171637169 -17642385 + AluSg/x SINE Alu 150 290 -20 189 0 0 0 chr6 171638339 171638360 -17641194 + (A)n Simple_repeat Simple_repeat 1 21 0 323 309 146 0 chr6 171640297 171640407 -17639147 + MER91A DNA MER1_type 1 126 -70 390 45 182 0 chr6 171646785 171646851 -17632703 - MLT2A1 LTR ERVL 0 444 367 273 68 81 0 chr6 171646857 171646931 -17632623 + (TA)n Simple_repeat Simple_repeat 2 81 0 3273 72 0 5 chr6 171646931 171647336 -17632218 - MLT2A1 LTR ERVL -41 403 1 261 318 113 20 chr6 171647356 171647507 -17632047 + MER5B DNA MER1_type 12 176 -2 2522 62 0 3 chr6 171647713 171648020 -17631534 + AluY SINE Alu 1 306 -5 2157 125 0 16 chr6 171648188 171648492 -17631062 - AluSx SINE Alu -13 299 1 2779 157 17 24 chr6 171648546 171649010 -17630544 - MER65C LTR ERV1 0 461 1 23 0 0 0 chr6 171649280 171649303 -17630251 + AT_rich Low_complexity Low_complexity 1 23 0 241 231 0 0 chr6 171649833 171649850 -17629704 + A-rich Low_complexity Low_complexity 1 17 -48 3113 21 0 0 chr6 171649850 171650183 -17629371 + SVA Other Other 1054 1386 0 241 231 0 0 chr6 171650183 171650230 -17629324 + A-rich Low_complexity Low_complexity 16 65 0 339 294 124 26 chr6 171650452 171650527 -17629027 + MIR SINE MIR 50 116 -146 2273 122 0 0 chr6 171650527 171650839 -17628715 - AluSx SINE Alu 0 312 1 339 294 124 26 chr6 171650839 171650957 -17628597 + MIR SINE MIR 116 262 0 530 229 8 8 chr6 171651087 171651209 -17628345 - L2 LINE L2 0 3313 3192 824 280 95 6 chr6 171651219 171651555 -17627999 - L2 LINE L2 -725 2589 2224 22 35 0 0 chr6 171653504 171653533 -17626021 + AT_rich Low_complexity Low_complexity 1 29 0 217 299 153 29 chr6 171654955 171655092 -17624462 + MIR3 SINE MIR 44 197 -11 540 205 83 51 chr6 171655206 171655362 -17624192 - MIR SINE MIR -15 247 87 2493 60 0 25 chr6 171656154 171656469 -17623085 + AluY SINE Alu 1 307 -4 493 222 75 71 chr6 171659731 171659943 -17619611 - MIR SINE MIR -21 241 29 263 335 190 0 chr6 171659929 171660087 -17619467 + MIR SINE MIR 27 214 -48 * 1132 201 34 0 chr6 171660136 171660345 -17619209 + MER20 DNA MER1_type 1 216 -3 742 225 81 36 chr6 171661446 171661846 -17617708 + LTR16A1 LTR ERVL 8 457 0 181 365 84 28 chr6 171662674 171662781 -17616773 + MIR3 SINE MIR 5 117 -91 27 0 0 0 chr6 171662813 171662840 -17616714 + AT_rich Low_complexity Low_complexity 1 27 0 183 339 137 39 chr6 171662881 171663267 -17616287 - L2 LINE L2 -670 2644 2221 496 238 82 34 chr6 171664981 171665128 -17614426 + MIR SINE MIR 34 187 -75 25 65 0 0 chr6 171666101 171666147 -17613407 + AT_rich Low_complexity Low_complexity 1 46 0 366 42 0 0 chr6 171666491 171666539 -17613015 + (CA)n Simple_repeat Simple_repeat 1 48 0 246 224 0 0 chr6 171666889 171666938 -17612616 + L2 LINE L2 3265 3313 0 212 273 0 18 chr6 171666962 171667017 -17612537 + MIR SINE MIR 22 75 -133 866 227 0 0 chr6 171667556 171667710 -17611844 - FRAM SINE Alu -22 154 1 237 318 11 0 chr6 171668201 171668289 -17611265 + GA-rich Low_complexity Low_complexity 2 90 0 29 0 0 0 chr6 171668569 171668598 -17610956 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr6 171668927 171668950 -17610604 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 207 100 0 0 chr6 171669515 171669545 -17610009 + (CACG)n Simple_repeat Simple_repeat 2 31 0 5182 109 91 129 chr6 171670194 171671724 -17607830 - pTR5 LTR ERV1 -75 2363 740 11196 174 25 31 chr6 171672339 171675741 -17603813 - L1MA7 LINE L1 -11 6484 3108 4677 170 28 26 chr6 171675727 171675998 -17603556 - L1MA4 LINE L1 0 6300 6031 * 1483 196 28 0 chr6 171675998 171676253 -17603301 - AluJo SINE Alu -29 283 22 4677 170 28 26 chr6 171676253 171677897 -17601657 - L1MA4 LINE L1 -269 6031 4390 7524 30 0 0 chr6 171677927 171678929 -17600625 - L1PA4 LINE L1 -2 6153 5151 1625 50 27 0 chr6 171678929 171679149 -17600405 - L1PA4 LINE L1 -1456 4690 4465 3135 257 40 31 chr6 171679363 171681036 -17598518 - L1MA7 LINE L1 -4165 2186 724 262 324 56 0 chr6 171681184 171681363 -17598191 - L1M3a LINE L1 -5226 729 541 644 344 73 26 chr6 171681553 171681980 -17597574 - L1M3a LINE L1 -5508 447 1 2322 115 3 0 chr6 171682355 171682667 -17596887 + AluSp SINE Alu 1 313 0 33 0 0 0 chr6 171682932 171682965 -17596589 + AT_rich Low_complexity Low_complexity 1 33 0 213 222 22 56 chr6 171683703 171683793 -17595761 - L2 LINE L2 -337 2976 2890 16433 148 16 83 chr6 171683820 171687906 -17591648 + L1PA14 LINE L1 11 3824 -3760 2253 128 0 0 chr6 171687906 171688210 -17591344 + AluSq SINE Alu 1 304 -9 5939 175 52 25 chr6 171688211 171690132 -17589422 + L1PA14 LINE L1 5651 7588 -11 346 309 198 14 chr6 171690148 171690436 -17589118 - L2 LINE L2 -470 2844 2504 359 118 94 12 chr6 171690844 171690929 -17588625 + MER103 DNA DNA 34 125 -41 2472 88 0 0 chr6 171691628 171691935 -17587619 + AluSx SINE Alu 1 307 -5 2470 58 0 0 chr6 171692920 171693215 -17586339 - AluY SINE Alu -16 295 1 837 182 7 7 chr6 171693357 171693500 -17586054 + AluSx SINE Alu 21 163 -149 22 35 0 0 chr6 171694031 171694060 -17585494 + AT_rich Low_complexity Low_complexity 1 29 0 209 355 29 58 chr6 171694576 171694714 -17584840 + L2 LINE L2 3134 3267 -5 24 67 0 0 chr6 171696091 171696136 -17583418 + AT_rich Low_complexity Low_complexity 1 45 0 506 335 108 6 chr6 171696239 171696555 -17582999 + L1ME LINE L1 4792 5139 -1007 252 275 12 0 chr6 171696558 171696638 -17582916 + (TA)n Simple_repeat Simple_repeat 1 81 0 343 300 0 0 chr6 171696679 171696769 -17582785 - L1MC4 LINE L1 -1339 6703 6614 326 258 0 43 chr6 171696695 171696788 -17582766 + L1MC4 LINE L1 6614 6702 -1340 * 282 160 0 0 chr6 171696795 171696845 -17582709 + (TA)n Simple_repeat Simple_repeat 2 51 0 620 205 0 8 chr6 171696857 171696979 -17582575 + FLAM_C SINE Alu 1 121 -22 22 70 0 0 chr6 171697003 171697046 -17582508 + AT_rich Low_complexity Low_complexity 1 43 0 506 310 47 24 chr6 171697223 171697604 -17581950 + L1ME LINE L1 5413 5802 -368 402 21 0 0 chr6 171697714 171697761 -17581793 + (TG)n Simple_repeat Simple_repeat 1 47 0 21 57 0 0 chr6 171697882 171697917 -17581637 + AT_rich Low_complexity Low_complexity 1 35 0 276 291 81 20 chr6 171699519 171699667 -17579887 + MIR3 SINE MIR 47 203 -5 1814 148 167 16 chr6 171699905 171700277 -17579277 + MSTA LTR MaLR 1 428 0 2449 76 0 10 chr6 171700279 171700593 -17578961 + AluY SINE Alu 1 311 0 312 192 119 147 chr6 171700989 171701166 -17578388 + MER21B LTR ERV1 1 172 -691 1092 210 55 29 chr6 171701183 171701492 -17578062 + MER21B LTR ERV1 487 803 -60 733 177 42 57 chr6 171701763 171701955 -17577599 - MER20 DNA MER1_type -4 215 27 447 252 113 126 chr6 171702150 171703016 -17576538 + L1ME3A LINE L1 89 965 -5431 1763 159 7 34 chr6 171703016 171703312 -17576242 - AluJb SINE Alu -24 288 1 447 252 113 126 chr6 171703312 171703332 -17576222 + L1ME3A LINE L1 965 984 -5412 216 0 0 0 chr6 171703332 171703356 -17576198 + (CATA)n Simple_repeat Simple_repeat 1 24 0 447 252 113 126 chr6 171703356 171703434 -17576120 + L1ME3A LINE L1 984 1041 -5355 336 321 156 25 chr6 171703974 171704211 -17575343 - HAL1 LINE L1 -466 2041 1774 396 280 78 21 chr6 171704257 171704500 -17575054 + L1ME3A LINE L1 4929 5185 -1030 530 287 96 41 chr6 171704508 171705262 -17574292 + L1ME3A LINE L1 5219 6018 -221 2538 50 3 0 chr6 171705263 171705563 -17573991 + AluY SINE Alu 1 301 -10 2075 160 6 6 chr6 171705827 171706171 -17573383 - MER2 DNA MER2_type 0 344 1 22 0 0 0 chr6 171706193 171706215 -17573339 + AT_rich Low_complexity Low_complexity 1 22 0 242 273 45 0 chr6 171706355 171706421 -17573133 + HAL1 LINE L1 538 606 -1901 2107 83 0 70 chr6 171706456 171706757 -17572797 - AluSg SINE Alu -30 280 1 198 359 169 22 chr6 171707561 171708152 -17571402 - L2 LINE L2 -911 2403 1726 248 380 91 0 chr6 171710131 171710252 -17569302 + L2 LINE L2 3182 3313 0 22 0 0 0 chr6 171710956 171710978 -17568576 + AT_rich Low_complexity Low_complexity 1 22 0 2227 115 3 3 chr6 171710998 171711310 -17568244 - AluSx SINE Alu 0 312 1 1844 55 0 4 chr6 171712968 171713205 -17566349 - THE1C LTR MaLR 0 375 140 282 81 0 0 chr6 171713205 171713242 -17566312 - THE1C LTR MaLR -327 37 1 475 129 35 0 chr6 171713288 171713373 -17566181 + L1MA6 LINE L1 6147 6234 -66 533 332 50 5 chr6 171713975 171714195 -17565359 - MIR SINE MIR -26 236 7 1945 101 0 8 chr6 171714241 171714509 -17565045 + AluSq SINE Alu 39 304 -9 341 258 16 16 chr6 171714601 171714729 -17564825 + L1ME1 LINE L1 360 487 -6234 468 261 166 51 chr6 171714729 171715024 -17564530 + L1ME1 LINE L1 1613 1941 -4599 1014 193 100 4 chr6 171715032 171715291 -17564263 + L1ME1 LINE L1 5145 5428 -1112 22 0 0 0 chr6 171715291 171715313 -17564241 + AT_rich Low_complexity Low_complexity 1 22 0 547 94 20 43 chr6 171715313 171715571 -17563983 + (TA)n Simple_repeat Simple_repeat 1 252 0 2849 217 19 59 chr6 171715677 171716461 -17563093 + L1ME1 LINE L1 5738 6552 -8 1688 169 3 31 chr6 171716461 171716751 -17562803 + AluJb SINE Alu 3 284 -28 363 78 0 0 chr6 171716751 171716802 -17562752 + (CA)n Simple_repeat Simple_repeat 2 52 0 2849 217 19 59 chr6 171716802 171716868 -17562686 + L1ME1 LINE L1 6550 6555 -5 2207 102 39 36 chr6 171716882 171717245 -17562309 - THE1B LTR MaLR 0 364 1 971 93 214 6 chr6 171717333 171717515 -17562039 + MER30 DNA MER1_type 11 230 0 505 258 48 0 chr6 171718111 171718235 -17561319 - MIR SINE MIR -132 130 1 739 248 0 34 chr6 171718883 171719089 -17560465 - L2 LINE L2 -15 3298 3100 337 314 68 40 chr6 171719977 171720225 -17559329 - L3 LINE CR1 -152 1425 1171 23 0 0 0 chr6 171720464 171720487 -17559067 + AT_rich Low_complexity Low_complexity 1 23 0 289 260 190 20 chr6 171720586 171720686 -17558868 + MER5A DNA MER1_type 7 123 -66 22 0 0 0 chr6 171721587 171721609 -17557945 + AT_rich Low_complexity Low_complexity 1 22 0 2217 136 3 0 chr6 171722588 171722897 -17556657 + AluSq SINE Alu 3 312 -1 398 206 9 37 chr6 171723170 171723277 -17556277 + L1ME1 LINE L1 6060 6163 -3 302 311 132 21 chr6 171724189 171724379 -17555175 - L1M2 LINE L1 -5744 1105 895 314 220 125 75 chr6 171724562 171724762 -17554792 + MIR SINE MIR 53 262 0 262 328 119 15 chr6 171725278 171725479 -17554075 - MIR SINE MIR -38 224 3 1183 194 30 111 chr6 171726226 171726623 -17552931 - MLT1A1 LTR MaLR 0 365 1 8564 123 37 11 chr6 171727891 171729336 -17550218 - Tigger1 DNA MER2_type -1 2417 936 549 327 106 15 chr6 171729378 171729839 -17549715 + L2 LINE L2 2539 3054 -218 27 0 0 0 chr6 171729916 171729943 -17549611 + AT_rich Low_complexity Low_complexity 1 27 0 461 255 19 62 chr6 171730458 171730619 -17548935 + L2 LINE L2 3160 3313 0 183 377 22 36 chr6 171730831 171730969 -17548585 + L2 LINE L2 2717 2852 -462 282 353 60 0 chr6 171731273 171731389 -17548165 + L2 LINE L2 3140 3262 -10 469 299 0 104 chr6 171731431 171731564 -17547990 + MIR SINE MIR 1 92 -170 2034 202 15 50 chr6 171731564 171732084 -17547470 + MLT1D LTR MaLR 1 502 -3 469 299 0 104 chr6 171732084 171732228 -17547326 + MIR SINE MIR 92 249 -13 208 148 33 16 chr6 171732978 171733039 -17546515 + (CATAT)n Simple_repeat Simple_repeat 3 64 0 2153 131 0 7 chr6 171733337 171733642 -17545912 - AluSx SINE Alu -9 303 1 489 257 72 34 chr6 171733669 171733906 -17545648 + MER112 DNA MER1_type 9 254 -6 3309 188 48 52 chr6 171734325 171735381 -17544173 - MER69 DNA AcHobo -23 2503 1452 796 216 17 6 chr6 171735435 171735611 -17543943 - MER69 DNA AcHobo -2345 181 4 442 243 42 99 chr6 171735718 171735981 -17543573 - LTR16C LTR ERVL -7 484 237 2574 50 0 0 chr6 171736321 171736623 -17542931 - AluY SINE Alu -9 302 1 437 298 101 18 chr6 171736910 171737078 -17542476 + MIR3 SINE MIR 6 187 -21 329 263 74 0 chr6 171737139 171737234 -17542320 + MIR3 SINE MIR 85 186 -22 289 272 79 18 chr6 171738609 171738723 -17540831 - MIR SINE MIR -50 212 92 288 0 0 0 chr6 171738985 171739017 -17540537 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 194 387 179 6 chr6 171739053 171739226 -17540328 - L2 LINE L2 -60 3212 3010 186 257 0 0 chr6 171739619 171739654 -17539900 - MIR SINE MIR -149 113 79 190 268 169 0 chr6 171739665 171739736 -17539818 - L2 LINE L2 -76 3196 3114 638 302 131 25 chr6 171739871 171740493 -17539061 - L2 LINE L2 -208 3064 2364 443 282 69 0 chr6 171740817 171740948 -17538606 + MIR SINE MIR 28 167 -95 403 188 0 0 chr6 171740968 171741032 -17538522 - MER91 DNA MER1_type 0 190 127 258 270 0 0 chr6 171741627 171741690 -17537864 - MER91 DNA MER1_type -61 129 67 1804 131 8 8 chr6 171741971 171742238 -17537316 - AluSq SINE Alu -15 298 32 3633 164 27 23 chr6 171743105 171743806 -17535748 - MER44D DNA MER2_type -1 704 1 407 195 0 12 chr6 171743897 171743979 -17535575 + MER94 DNA DNA 54 134 0 1858 243 34 21 chr6 171744478 171745118 -17534436 + L1PB1 LINE L1 558 1198 -4130 2188 100 11 0 chr6 171745118 171745399 -17534155 + AluSp SINE Alu 14 297 -16 13327 190 30 8 chr6 171745405 171747263 -17532291 + L1PB1 LINE L1 1851 3666 -2667 2390 81 0 0 chr6 171747263 171747558 -17531996 - AluY SINE Alu -16 295 1 13327 190 30 8 chr6 171747558 171750113 -17529441 + L1PB1 LINE L1 3666 6332 -1 183 390 24 0 chr6 171750396 171750478 -17529076 + MIR3 SINE MIR 71 154 -54 749 251 87 5 chr6 171750488 171750695 -17528859 + MER58A DNA MER1_type 1 224 0 1939 118 30 0 chr6 171750759 171751030 -17528524 + AluSx SINE Alu 1 279 -33 216 0 0 0 chr6 171752173 171752197 -17527357 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 325 171 29 14 chr6 171752197 171752267 -17527287 - FRAM SINE Alu -20 146 76 244 330 56 0 chr6 171752541 171752720 -17526834 - L1M3a LINE L1 -5226 729 541 791 354 31 25 chr6 171752910 171753354 -17526200 - L1M3a LINE L1 -5508 447 1 2357 109 3 0 chr6 171753729 171754072 -17525482 + AluSp SINE Alu 1 344 0 33 0 0 0 chr6 171754308 171754341 -17525213 + AT_rich Low_complexity Low_complexity 1 33 0 213 222 22 56 chr6 171755080 171755170 -17524384 - L2 LINE L2 -337 2976 2890 16565 147 16 83 chr6 171755197 171759284 -17520270 + L1PA14 LINE L1 11 3824 -3760 2261 128 0 0 chr6 171759284 171759589 -17519965 + AluSq SINE Alu 1 305 -8 5967 174 50 25 chr6 171759590 171761512 -17518042 + L1PA14 LINE L1 5651 7588 -11 325 313 198 14 chr6 171761528 171761816 -17517738 - L2 LINE L2 -470 2844 2504 359 118 94 12 chr6 171762226 171762311 -17517243 + MER103 DNA DNA 34 125 -41 3517 164 34 29 chr6 171763879 171764579 -17514975 - MER44D DNA MER2_type -1 704 1 375 317 37 6 chr6 171764870 171765031 -17514523 - MIR3 SINE MIR -6 202 37 333 337 63 21 chr6 171765244 171765434 -17514120 - MIR SINE MIR -45 217 20 185 81 0 27 chr6 171765930 171765967 -17513587 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 5316 131 18 11 chr6 171766234 171766964 -17512590 - L1PA15 LINE L1 -2 6163 5424 1878 179 40 3 chr6 171766964 171767288 -17512266 - MER1B DNA MER1_type -1 336 1 5316 131 18 11 chr6 171767288 171767506 -17512048 - L1PA15 LINE L1 -741 5424 5209 252 169 136 0 chr6 171768587 171768646 -17510908 - L2 LINE L2 0 3272 3206 1924 201 48 23 chr6 171769091 171769118 -17510436 - MLT2C2 LTR ERVL -13 451 426 231 61 0 0 chr6 171769118 171769151 -17510403 + (CA)n Simple_repeat Simple_repeat 2 34 0 1924 201 48 23 chr6 171769151 171769414 -17510140 - MLT2C2 LTR ERVL -38 426 171 2674 93 3 3 chr6 171769414 171769769 -17509785 - THE1A LTR MaLR 0 355 1 11257 105 4 3 chr6 171769769 171771348 -17508206 - THE1A-int LTR MaLR 0 1580 1 2715 90 3 0 chr6 171771348 171771702 -17507852 - THE1A LTR MaLR 0 355 1 1924 201 48 23 chr6 171771702 171771845 -17507709 - MLT2C2 LTR ERVL -292 172 4 191 262 49 104 chr6 171772028 171772192 -17507362 - L2 LINE L2 -273 2999 2845 1144 215 66 75 chr6 171772216 171772685 -17506869 - MLT1C LTR MaLR -2 465 1 431 259 116 37 chr6 171772742 171772958 -17506596 - MER102b DNA MER1_type -25 316 84 2562 113 6 3 chr6 171773237 171773600 -17505954 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr6 171774217 171774238 -17505316 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 171774916 171774937 -17504617 + AT_rich Low_complexity Low_complexity 1 21 0 2547 254 47 72 chr6 171775631 171775829 -17503725 + L1MC5 LINE L1 6428 6629 -1332 1171 61 6 24 chr6 171775829 171775993 -17503561 - L1PA10 LINE L1 -5 6163 6003 2547 254 47 72 chr6 171775993 171777303 -17502251 + L1MC5 LINE L1 6629 7890 -71 980 294 82 59 chr6 171777760 171777939 -17501615 + L1ME LINE L1 3643 3817 -2347 2543 89 0 6 chr6 171777939 171778288 -17501266 + L1PA10 LINE L1 5805 6151 -17 980 294 82 59 chr6 171778288 171778856 -17500698 + L1ME LINE L1 3817 4371 -1793 650 207 0 22 chr6 171778856 171778991 -17500563 + FLAM_C SINE Alu 1 132 -1 980 294 82 59 chr6 171778991 171780324 -17499230 + L1ME LINE L1 4371 5771 -393 961 204 0 0 chr6 171780401 171780568 -17498986 - AluSg/x SINE Alu -16 294 128 1556 139 139 32 chr6 171781579 171781918 -17497636 + THE1C LTR MaLR 1 375 0 379 301 51 34 chr6 171782571 171782747 -17496807 + MIR SINE MIR 6 184 -78 2220 194 61 48 chr6 171782835 171783393 -17496161 + MER34B LTR ERV1 1 565 0 445 292 35 35 chr6 171783478 171783649 -17495905 + MER5B DNA MER1_type 7 177 -1 361 333 214 15 chr6 171783741 171784138 -17495416 + L2 LINE L2 1764 2239 -1075 194 298 18 0 chr6 171784191 171784248 -17495306 + L2 LINE L2 2219 2276 -1038 471 171 8 94 chr6 171784570 171784687 -17494867 + MER34C LTR ERV1 37 143 -442 321 202 33 70 chr6 171784688 171784810 -17494744 + MER34 LTR ERV1 444 540 -2 554 269 18 12 chr6 171784818 171784989 -17494565 - MIR SINE MIR -27 235 64 291 308 159 53 chr6 171785582 171785656 -17493898 + MIR SINE MIR 10 75 -187 1723 207 25 19 chr6 171785656 171786019 -17493535 + MLT1A1 LTR MaLR 1 365 0 291 308 159 53 chr6 171786019 171786171 -17493383 + MIR SINE MIR 75 260 -2 23 0 0 0 chr6 171786425 171786448 -17493106 + AT_rich Low_complexity Low_complexity 1 23 0 285 335 45 84 chr6 171786754 171786933 -17492621 - L2 LINE L2 -5 3267 3096 602 302 62 29 chr6 171788260 171788502 -17491052 + MIR SINE MIR 10 259 -3 342 324 100 12 chr6 171789046 171789216 -17490338 + MIR3 SINE MIR 13 197 -11 1690 151 4 7 chr6 171790364 171790636 -17488918 - AluJb SINE Alu -24 288 18 408 159 0 0 chr6 171790636 171790699 -17488855 - AluS SINE Alu -239 63 1 21 71 0 0 chr6 171791174 171791216 -17488338 + AT_rich Low_complexity Low_complexity 1 42 0 230 276 0 0 chr6 171791996 171792054 -17487500 + (TA)n Simple_repeat Simple_repeat 2 59 0 606 262 18 49 chr6 171792116 171792321 -17487233 + MIR SINE MIR 54 252 -10 360 337 42 36 chr6 171792497 171792663 -17486891 + MIR3 SINE MIR 6 172 -36 207 353 25 17 chr6 171792727 171792846 -17486708 + L2 LINE L2 3191 3310 -3 200 327 18 0 chr6 171794715 171794770 -17484784 - L2 LINE L2 -8 3264 3209 2283 114 36 20 chr6 171795203 171795561 -17483993 + THE1B LTR MaLR 1 364 0 329 333 101 27 chr6 171796628 171796925 -17482629 + L3 LINE CR1 1245 1563 -14 319 318 28 78 chr6 171797921 171798100 -17481454 + MIR SINE MIR 35 204 -58 1662 168 103 14 chr6 171798501 171798859 -17480695 + MLT1B LTR MaLR 1 390 0 356 261 0 43 chr6 171799169 171799261 -17480293 - AluJo SINE Alu -121 181 94 1218 158 58 58 chr6 171799263 171799523 -17480031 + AluJo SINE Alu 50 309 -3 1769 200 79 110 chr6 171800389 171800846 -17478708 - MLT1E2 LTR MaLR -3 623 190 2025 139 0 0 chr6 171800846 171801133 -17478421 - AluSx SINE Alu -25 287 1 1769 200 79 110 chr6 171801133 171801311 -17478243 - MLT1E2 LTR MaLR -436 190 8 1887 232 33 33 chr6 171801994 171802512 -17477042 - LTR40a LTR ERVL 0 519 2 424 256 25 0 chr6 171802969 171803090 -17476464 - MER103 DNA DNA -42 124 1 297 0 0 0 chr6 171803097 171803130 -17476424 + (TG)n Simple_repeat Simple_repeat 2 34 0 2613 219 89 23 chr6 171803771 171804194 -17475360 - L1ME1 LINE L1 -4 6556 6163 2983 34 0 0 chr6 171804194 171804551 -17475003 + L1PA3 LINE L1 5799 6155 0 2613 219 89 23 chr6 171804551 171805183 -17474371 - L1ME1 LINE L1 -397 6163 5436 502 237 11 104 chr6 171805175 171805317 -17474237 - L1ME1 LINE L1 -3752 2808 2654 * 2090 134 3 0 chr6 171805317 171805624 -17473930 - AluSx SINE Alu -4 308 1 502 237 11 104 chr6 171805624 171805857 -17473697 - L1ME1 LINE L1 -3906 2654 2443 718 298 62 39 chr6 171805891 171806118 -17473436 - L1ME1 LINE L1 -5921 800 559 2285 98 0 3 chr6 171806118 171806414 -17473140 + AluSc SINE Alu 1 295 -14 718 298 62 39 chr6 171806414 171806572 -17472982 - L1ME1 LINE L1 -6162 559 406 186 322 56 11 chr6 171808131 171808221 -17471333 - L2 LINE L2 -31 3282 3189 1387 210 0 25 chr6 171809202 171809516 -17470038 - AluJo SINE Alu 0 309 3 2222 114 0 0 chr6 171809609 171809908 -17469646 + AluSg1 SINE Alu 1 299 -10 2273 94 3 3 chr6 171811572 171811869 -17467685 - AluSp SINE Alu -16 297 1 387 182 81 20 chr6 171812029 171812128 -17467426 - MIR3 SINE MIR -35 173 69 30 59 0 0 chr6 171813444 171813495 -17466059 + AT_rich Low_complexity Low_complexity 1 51 0 238 280 42 42 chr6 171814222 171814390 -17465164 - L1MC4a LINE L1 -1873 5935 5768 271 239 15 0 chr6 171814430 171814497 -17465057 - L1MC4a LINE L1 -2023 5785 5718 883 62 0 0 chr6 171814497 171814610 -17464944 - AluY SINE Alu -9 302 190 452 171 0 0 chr6 171814610 171814686 -17464868 - AluJ/FLAM SINE Alu -236 76 1 2564 219 31 9 chr6 171814985 171815621 -17463933 - L1MD1 LINE L1 0 6242 5593 893 214 29 0 chr6 171815641 171815847 -17463707 - L1MC/D LINE L1 -438 6064 5853 747 255 34 44 chr6 171815843 171816137 -17463417 - L1MC/D LINE L1 -1037 5369 5079 * 3591 232 50 100 chr6 171816140 171816751 -17462803 - L1MDb LINE L1 -2163 4243 3603 2224 149 134 5 chr6 171816751 171817168 -17462386 - MER101 LTR ERV1 -1 473 3 3591 232 50 100 chr6 171817168 171817692 -17461862 - L1MDb LINE L1 -2803 3603 3054 1742 186 0 7 chr6 171817692 171817998 -17461556 - AluJb SINE Alu -3 309 6 3591 232 50 100 chr6 171817998 171818010 -17461544 - L1MDb LINE L1 -3352 3054 3043 751 167 0 0 chr6 171818010 171818124 -17461430 - FLAM_A SINE Alu -16 126 13 3591 232 50 100 chr6 171818124 171818919 -17460635 - L1MDb LINE L1 -3363 3043 2327 237 235 45 91 chr6 171819096 171819228 -17460326 + MER41E LTR ERV1 166 291 -221 1733 257 33 12 chr6 171819337 171819819 -17459735 + MER41E LTR ERV1 21 512 0 864 206 168 48 chr6 171819829 171820132 -17459422 - L1MDb LINE L1 -4153 2253 1895 2209 95 17 7 chr6 171820132 171820427 -17459127 + AluSx SINE Alu 1 298 -14 864 206 168 48 chr6 171820427 171820497 -17459057 - L1MDb LINE L1 -4511 1895 1835 * 1263 244 96 65 chr6 171820489 171821108 -17458446 - L1MDb LINE L1 -5650 759 3 241 269 15 15 chr6 171821595 171821662 -17457892 + L2 LINE L2 3199 3265 -7 643 305 75 9 chr6 171821734 171821947 -17457607 - L3b LINE CR1 -24 1559 1333 641 286 119 42 chr6 171822207 171822609 -17456945 + MLT1H LTR MaLR 107 539 -10 306 0 0 0 chr6 171823212 171823246 -17456308 + (CA)n Simple_repeat Simple_repeat 1 34 0 1713 186 54 23 chr6 171823350 171823699 -17455855 + MLT1A1 LTR MaLR 6 365 0 2444 136 44 0 chr6 171824702 171825108 -17454446 - MSTA LTR MaLR -1 427 4 280 357 48 18 chr6 171825160 171825432 -17454122 + L2 LINE L2 1899 2178 -1136 468 214 100 29 chr6 171826741 171826808 -17452746 + MER5A DNA MER1_type 9 70 -119 1938 117 0 7 chr6 171826808 171827081 -17452473 + AluSg SINE Alu 1 271 -39 468 214 100 29 chr6 171827081 171827153 -17452401 + MER5A DNA MER1_type 70 158 -31 324 292 0 0 chr6 171828178 171828267 -17451287 - L2 LINE L2 -4 3309 3221 421 274 11 0 chr6 171828322 171828417 -17451137 - L2 LINE L2 -557 2757 2662 490 274 73 21 chr6 171828825 171829038 -17450516 - MIR SINE MIR -6 256 34 2594 194 141 3 chr6 171829303 171829927 -17449627 + L1MB1 LINE L1 5459 6168 0 24 0 0 0 chr6 171830526 171830550 -17449004 + AT_rich Low_complexity Low_complexity 1 24 0 223 372 0 0 chr6 171831215 171831293 -17448261 - MIR3 SINE MIR -23 185 108 894 151 9 84 chr6 171831806 171831938 -17447616 + MER3 DNA MER1_type 2 142 -67 203 32 65 0 chr6 171831938 171831969 -17447585 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2051 113 3 17 chr6 171831979 171832271 -17447283 - AluSx SINE Alu -24 288 1 894 151 9 84 chr6 171832271 171832352 -17447202 + MER3 DNA MER1_type 151 209 0 360 0 0 0 chr6 171833118 171833158 -17446396 + (CA)n Simple_repeat Simple_repeat 2 41 0 1334 289 106 39 chr6 171834548 171835324 -17444230 + L1MEd LINE L1 6 833 -5286 871 254 101 45 chr6 171835363 171835934 -17443620 + L1MEd LINE L1 905 1629 -861 2460 75 0 0 chr6 171835983 171836291 -17443263 + AluY SINE Alu 1 308 -3 24 0 0 0 chr6 171836291 171836315 -17443239 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr6 171836618 171836648 -17442906 + AT_rich Low_complexity Low_complexity 1 30 0 525 267 50 98 chr6 171837241 171837867 -17441687 - L1MC5 LINE L1 -733 7228 6672 521 345 155 9 chr6 171838008 171838671 -17440883 + L1MEd LINE L1 2123 2882 -3247 270 0 0 0 chr6 171839774 171839804 -17439750 + (CA)n Simple_repeat Simple_repeat 2 31 0 25 0 0 0 chr6 171841490 171841515 -17438039 + AT_rich Low_complexity Low_complexity 1 25 0 2272 168 29 7 chr6 171843108 171843525 -17436029 + MSTB LTR MaLR 1 426 0 332 259 191 32 chr6 171843789 171843978 -17435576 + MIR SINE MIR 1 219 -43 207 69 0 0 chr6 171844935 171844964 -17434590 + (A)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr6 171845160 171845181 -17434373 + AT_rich Low_complexity Low_complexity 1 21 0 337 282 99 14 chr6 171846079 171846221 -17433333 - MIR SINE MIR -51 211 58 373 261 0 42 chr6 171846694 171846813 -17432741 - LTR41 LTR ERVL -6 767 654 654 248 48 14 chr6 171847261 171847471 -17432083 - LTR41 LTR ERVL -556 217 1 385 231 55 0 chr6 171847662 171847753 -17431801 + L2 LINE L2 3218 3313 0 187 339 189 0 chr6 171848556 171848683 -17430871 + MIR SINE MIR 36 186 -76 1858 145 0 14 chr6 171849184 171849496 -17430058 - AluJo SINE Alu 0 308 1 470 303 117 60 chr6 171849910 171850362 -17429192 + L2 LINE L2 2253 2730 -584 1474 236 99 42 chr6 171851849 171852450 -17427104 + MLT1E2 LTR MaLR 1 626 0 272 264 60 36 chr6 171853438 171853605 -17425949 + LTR67 LTR ERVL 351 521 -36 231 266 16 31 chr6 171853686 171853750 -17425804 + MIR SINE MIR 23 85 -123 204 67 0 0 chr6 171853771 171853801 -17425753 + (A)n Simple_repeat Simple_repeat 1 30 0 25 83 0 0 chr6 171854166 171854226 -17425328 + AT_rich Low_complexity Low_complexity 1 60 0 1105 224 105 73 chr6 171855399 171856016 -17423538 - L1MC5 LINE L1 -48 7913 7277 1059 211 77 105 chr6 171856080 171856607 -17422947 - L1MC5 LINE L1 -870 7091 6565 271 303 37 48 chr6 171856755 171856943 -17422611 - HAL1b LINE L1 -938 410 225 237 206 0 32 chr6 171858367 171858430 -17421124 - L1MEd LINE L1 -3144 2985 2925 23 33 0 0 chr6 171858483 171858513 -17421041 + AT_rich Low_complexity Low_complexity 1 30 0 309 306 36 41 chr6 171858530 171858919 -17420635 - L1MEd LINE L1 -3380 2749 2363 691 280 60 61 chr6 171859448 171860076 -17419478 - L1MEd LINE L1 -825 1665 939 1828 231 19 30 chr6 171860475 171860903 -17418651 - LTR40a LTR ERVL -96 423 1 266 238 109 41 chr6 171860937 171861084 -17418470 - L1M4 LINE L1 -1896 4250 4094 1514 254 151 41 chr6 171861602 171862524 -17417030 - HAL1 LINE L1 0 2507 1485 609 267 71 25 chr6 171862554 171862794 -17416760 - L1ME3 LINE L1 -7 6155 5905 27 62 0 0 chr6 171863190 171863238 -17416316 + AT_rich Low_complexity Low_complexity 1 48 0 23 54 0 0 chr6 171863749 171863786 -17415768 + AT_rich Low_complexity Low_complexity 1 37 0 640 171 46 20 chr6 171863841 171863993 -17415561 - L1MA10 LINE L1 -10 6324 6169 2110 203 101 50 chr6 171864042 171865205 -17414349 - L1ME1 LINE L1 -224 5942 4735 451 175 19 97 chr6 171865214 171865317 -17414237 - L1MC1 LINE L1 -15 6318 6224 1914 162 60 20 chr6 171865317 171865512 -17414042 + MLT1A1 LTR MaLR 1 218 -147 2154 118 48 22 chr6 171865512 171865867 -17413687 - THE1B LTR MaLR 0 364 1 1914 162 60 20 chr6 171865867 171866022 -17413532 + MLT1A1 LTR MaLR 218 365 0 1631 169 96 0 chr6 171866024 171866338 -17413216 - L1MC1 LINE L1 -107 6226 5883 1114 210 114 51 chr6 171866339 171866683 -17412871 + MLT1A1 LTR MaLR 1 426 0 1446 94 5 5 chr6 171866686 171866898 -17412656 - L1MC1 LINE L1 -450 5883 5672 33 25 0 0 chr6 171869116 171869156 -17410398 + AT_rich Low_complexity Low_complexity 1 40 0 2405 66 0 23 chr6 171870720 171871021 -17408533 - AluSg SINE Alu -16 294 1 217 221 59 29 chr6 171871568 171871636 -17407918 - MIR SINE MIR -86 176 107 1597 231 24 38 chr6 171871691 171872115 -17407439 - MER74B LTR ERVL -150 472 55 321 332 139 20 chr6 171872305 171872507 -17407047 + MIR SINE MIR 1 226 -36 2162 127 0 13 chr6 171873045 171873361 -17406193 + AluSx SINE Alu 1 312 0 917 172 6 6 chr6 171875313 171875476 -17404078 + Tigger1 DNA MER2_type 1 163 -2255 * 1482 106 14 0 chr6 171875464 171875671 -17403883 + Tigger1 DNA MER2_type 2209 2418 0 202 333 83 0 chr6 171877180 171877276 -17402278 + L2 LINE L2 3169 3272 0 360 376 12 12 chr6 171877295 171877457 -17402097 + L3 LINE CR1 1344 1505 -72 1956 159 0 9 chr6 171877642 171877957 -17401597 + AluJo SINE Alu 1 312 0 2269 112 0 0 chr6 171878291 171878587 -17400967 + AluSq SINE Alu 1 296 -17 185 249 129 75 chr6 171878678 171878879 -17400675 + L2 LINE L2 2766 2977 -337 180 0 0 0 chr6 171880908 171880928 -17398626 + (T)n Simple_repeat Simple_repeat 1 20 0 321 261 0 43 chr6 171881364 171881456 -17398098 - MIR3 SINE MIR -22 186 99 2100 111 31 0 chr6 171882233 171882521 -17397033 + AluSx SINE Alu 1 297 -15 302 290 188 0 chr6 171883033 171883171 -17396383 + MIR SINE MIR 95 258 -4 677 55 34 34 chr6 171883560 171883706 -17395848 + (TA)n Simple_repeat Simple_repeat 2 147 0 4749 134 56 3 chr6 171884720 171885415 -17394139 - MER44D DNA MER2_type -1 604 1 21 36 0 0 chr6 171885690 171885718 -17393836 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 171885920 171885948 -17393606 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 171886511 171886532 -17393022 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 171886570 171886598 -17392956 + AT_rich Low_complexity Low_complexity 1 28 0 2473 81 0 0 chr6 171887277 171887587 -17391967 - AluY SINE Alu -1 310 1 22 35 0 0 chr6 171887807 171887836 -17391718 + AT_rich Low_complexity Low_complexity 1 29 0 198 71 0 0 chr6 171888872 171888900 -17390654 + (T)n Simple_repeat Simple_repeat 1 28 0 919 192 11 0 chr6 171888904 171889081 -17390473 - AluJb SINE Alu -5 307 129 221 163 0 0 chr6 171889387 171889430 -17390124 + T-rich Low_complexity Low_complexity 1 43 0 212 241 134 45 chr6 171890017 171890129 -17389425 + MIR3 SINE MIR 15 136 -72 355 351 52 16 chr6 171890381 171890582 -17388972 - MIR SINE MIR -46 216 18 386 331 18 18 chr6 171895694 171895857 -17383697 - MIR3 SINE MIR -31 177 15 272 399 25 10 chr6 171895967 171896165 -17383389 - MIR3 SINE MIR -5 203 3 1032 122 0 6 chr6 171897343 171897499 -17382055 + L1MA5A LINE L1 6141 6295 -2 396 323 38 13 chr6 171897679 171897837 -17381717 + MIR SINE MIR 15 176 -86 321 47 0 0 chr6 171898121 171898164 -17381390 + (TG)n Simple_repeat Simple_repeat 2 44 0 222 37 0 0 chr6 171900964 171900991 -17378563 + (A)n Simple_repeat Simple_repeat 1 27 0 920 131 57 34 chr6 171901184 171901360 -17378194 - MLT1C LTR MaLR -287 180 1 2196 103 0 0 chr6 171901382 171901663 -17377891 + AluSx SINE Alu 14 294 -18 329 268 62 0 chr6 171902001 171902113 -17377441 + L2 LINE L2 3195 3313 0 405 0 0 0 chr6 171902540 171902585 -17376969 + (CA)n Simple_repeat Simple_repeat 1 45 0 1204 267 58 32 chr6 171902833 171903301 -17376253 + L2 LINE L2 2815 3294 -19 580 224 157 24 chr6 171903767 171903989 -17375565 + MIR SINE MIR 18 262 0 551 314 181 12 chr6 171904278 171904609 -17374945 + L3 LINE CR1 1189 1575 -2 322 336 107 39 chr6 171905195 171905475 -17374079 - L2 LINE L2 -4 3309 3011 2283 107 0 7 chr6 171905530 171905838 -17373716 + AluSc SINE Alu 2 307 -2 195 182 45 0 chr6 171907568 171907612 -17371942 + MIR SINE MIR 101 146 -116 609 133 18 31 chr6 171907779 171907996 -17371558 + AluJ SINE Alu 5 290 -22 232 304 14 0 chr6 171907996 171908065 -17371489 - MER103 DNA DNA -95 71 2 476 303 26 20 chr6 171908233 171908385 -17371169 - MIR SINE MIR -74 188 36 210 282 47 0 chr6 171908554 171908639 -17370915 + MIR SINE MIR 104 192 -70 371 308 83 0 chr6 171908752 171908885 -17370669 - MIR SINE MIR -2 260 117 236 310 239 7 chr6 171908918 171909073 -17370481 - MIR SINE MIR -71 191 1 204 200 18 18 chr6 171909518 171909573 -17369981 + (TA)n Simple_repeat Simple_repeat 1 55 0 189 398 11 11 chr6 171910146 171910239 -17369315 - MIR SINE MIR -96 112 20 253 315 31 15 chr6 171912378 171912508 -17367046 - L1MC/D LINE L1 -1927 5881 5750 2353 107 0 0 chr6 171912519 171912828 -17366726 + AluSx SINE Alu 1 309 -3 442 263 56 45 chr6 171913725 171913904 -17365650 - MIR SINE MIR 0 262 82 2299 109 3 3 chr6 171914642 171914954 -17364600 + AluSx SINE Alu 1 312 0 21 0 0 0 chr6 171914986 171915007 -17364547 + AT_rich Low_complexity Low_complexity 1 21 0 181 306 24 47 chr6 171915877 171915962 -17363592 + L3b LINE CR1 1289 1371 -212 487 258 122 21 chr6 171915993 171916409 -17363145 + L2 LINE L2 2596 3044 -269 319 256 22 11 chr6 171916449 171916539 -17363015 - L2 LINE L2 -2 3311 3221 578 254 38 43 chr6 171916599 171916808 -17362746 + L2 LINE L2 3105 3312 -1 276 149 0 0 chr6 171919226 171919273 -17360281 + (CA)n Simple_repeat Simple_repeat 1 47 0 2522 177 50 17 chr6 171920468 171920949 -17358605 - L1PB4 LINE L1 0 6156 5660 2053 128 0 34 chr6 171921284 171921605 -17357949 + AluY SINE Alu 1 310 -1 624 274 61 70 chr6 171922814 171923043 -17356511 + MIR SINE MIR 12 234 -28 267 157 0 0 chr6 171923072 171923123 -17356431 + (TTA)n Simple_repeat Simple_repeat 3 53 0 294 250 137 95 chr6 171923134 171923302 -17356252 + MIR SINE MIR 2 176 -86 1181 249 265 26 chr6 171923458 171924170 -17355384 - L2 LINE L2 -285 3028 2137 28 0 0 0 chr6 171925432 171925460 -17354094 + AT_rich Low_complexity Low_complexity 1 28 0 260 53 26 0 chr6 171925616 171925654 -17353900 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 210 354 80 26 chr6 171928584 171928697 -17350857 + L2 LINE L2 3125 3243 -29 540 308 5 5 chr6 171930648 171930833 -17348721 - MIR SINE MIR -19 243 59 326 298 10 19 chr6 171931301 171931405 -17348149 + MER5A DNA MER1_type 82 184 -5 265 270 151 8 chr6 171931880 171932006 -17347548 - MIR SINE MIR -56 206 63 457 241 130 0 chr6 171932012 171932120 -17347434 - L2 LINE L2 -2 3311 3190 485 238 0 0 chr6 171932209 171932310 -17347244 - MER58B DNA MER1_type 0 341 241 1036 256 95 16 chr6 171932785 171933101 -17346453 - MER58B DNA MER1_type 0 341 1 536 350 24 24 chr6 171933181 171933510 -17346044 - L3b LINE CR1 -153 1430 1102 230 150 0 50 chr6 171933599 171933659 -17345895 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 24 0 0 0 chr6 171934609 171934633 -17344921 + AT_rich Low_complexity Low_complexity 1 24 0 362 310 74 43 chr6 171934851 171935244 -17344310 + L1M4 LINE L1 4298 4702 -1444 259 145 0 32 chr6 171935245 171935307 -17344247 + (GAAAA)n Simple_repeat Simple_repeat 4 63 0 390 304 34 34 chr6 171935346 171935593 -17343961 + L1MCa LINE L1 1440 1926 -861 2625 38 0 3 chr6 171935791 171936141 -17343413 + L1PA5 LINE L1 5835 6154 0 881 268 132 24 chr6 171936309 171936697 -17342857 - HAL1b LINE L1 -636 712 239 2003 106 29 0 chr6 171936697 171936972 -17342582 - AluY SINE Alu -3 308 26 881 268 132 24 chr6 171936972 171937165 -17342389 - HAL1b LINE L1 -1109 239 68 858 221 35 69 chr6 171937196 171937544 -17342010 - MER46C DNA MER2_type -2 336 1 615 165 0 8 chr6 171937987 171938114 -17341440 - L1MB8 LINE L1 -7 6171 6046 2753 165 56 2 chr6 171938114 171938659 -17340895 - L1MA4 LINE L1 -6 6294 5713 1992 101 3 31 chr6 171938664 171938951 -17340603 - AluSx SINE Alu -20 292 14 1942 166 20 20 chr6 171938955 171939359 -17340195 - L1MB8 LINE L1 -120 6058 5655 198 103 0 0 chr6 171939927 171939956 -17339598 + (TG)n Simple_repeat Simple_repeat 2 30 0 1430 268 141 31 chr6 171939990 171940601 -17338953 + L2 LINE L2 1824 2501 -813 37 52 0 0 chr6 171941104 171941162 -17338392 + AT_rich Low_complexity Low_complexity 1 58 0 1774 201 24 7 chr6 171941809 171942262 -17337292 + L1MDb LINE L1 774 1234 -5175 1737 209 24 79 chr6 171942264 171942796 -17336758 + MLT1D LTR MaLR 3 505 0 238 303 9 28 chr6 171942821 171942930 -17336624 + L1M4 LINE L1 4552 4658 -1488 753 234 55 0 chr6 171942969 171943170 -17336384 - MER58C DNA MER1_type -1 214 3 25 0 0 0 chr6 171944837 171944862 -17334692 + AT_rich Low_complexity Low_complexity 1 25 0 195 269 160 17 chr6 171945743 171945862 -17333692 - L2 LINE L2 -13 3300 3165 213 318 16 0 chr6 171945965 171946028 -17333526 + (TG)n Simple_repeat Simple_repeat 1 64 0 715 186 14 0 chr6 171946035 171946175 -17333379 - FRAM SINE Alu -30 146 5 2433 61 3 0 chr6 171946267 171946562 -17332992 + AluY SINE Alu 5 300 -11 252 302 41 30 chr6 171947520 171947689 -17331865 + L1MC4a LINE L1 7250 7420 -388 443 247 36 113 chr6 171947693 171948154 -17331400 + L1MC4 LINE L1 7357 7891 -151 272 274 14 0 chr6 171948285 171948358 -17331196 + MIR SINE MIR 188 261 -1 815 177 0 0 chr6 171949324 171949448 -17330106 - FLAM_C SINE Alu -19 124 1 1386 152 35 17 chr6 171949920 171950209 -17329345 - L1MB3 LINE L1 -2 6181 5888 1236 115 78 5 chr6 171951166 171951384 -17328170 - MER46A DNA MER2_type 0 236 3 1098 204 186 24 chr6 171951590 171951928 -17327626 - MSTD LTR MaLR -3 393 1 195 383 120 11 chr6 171952032 171952207 -17327347 - MIR3 SINE MIR -5 203 10 1645 85 31 0 chr6 171953135 171953358 -17326196 + MER30 DNA MER1_type 1 230 0 1008 180 81 5 chr6 171953450 171953661 -17325893 + MER58 DNA MER1_type 2 228 -2192 455 193 50 0 chr6 171954979 171955098 -17324456 - L1ME4a LINE L1 -7 6114 5990 21 0 0 0 chr6 171955192 171955213 -17324341 + AT_rich Low_complexity Low_complexity 1 21 0 647 209 0 9 chr6 171956203 171956318 -17323236 + L2 LINE L2 3159 3272 0 257 109 22 0 chr6 171956355 171956401 -17323153 + GA-rich Low_complexity Low_complexity 2 48 0 316 209 0 45 chr6 171956463 171956530 -17323024 - L2 LINE L2 0 3272 3209 697 237 65 18 chr6 172007541 172007819 -17271735 + L1ME3 LINE L1 5799 6089 -73 676 207 78 17 chr6 172007897 172008129 -17271425 - L1ME4a LINE L1 -247 5915 5670 278 243 14 0 chr6 172008281 172008351 -17271203 + (TA)n Simple_repeat Simple_repeat 2 72 0 285 321 83 20 chr6 172008376 172008645 -17270909 - L1M4 LINE L1 -3317 2829 2526 2251 119 0 0 chr6 172008645 172008947 -17270607 + AluSq SINE Alu 1 302 -11 285 321 83 20 chr6 172008947 172009072 -17270482 - L1M4 LINE L1 -3620 2526 2410 331 255 85 0 chr6 172009080 172009186 -17270368 + MIR SINE MIR 111 225 -37 424 234 51 17 chr6 172009218 172009393 -17270161 - L1M4 LINE L1 -3752 2394 2214 282 221 26 13 chr6 172009965 172010042 -17269512 + CT-rich Low_complexity Low_complexity 3 80 0 1557 202 32 12 chr6 172010082 172010483 -17269071 + LTR37A LTR ERV1 18 426 0 547 145 25 27 chr6 172011733 172011866 -17267688 + MSTD LTR MaLR 1 136 -229 2395 112 31 11 chr6 172013159 172013516 -17266038 - THE1B LTR MaLR 0 364 1 215 164 15 52 chr6 172013660 172013794 -17265760 + A-rich Low_complexity Low_complexity 3 131 0 855 227 11 0 chr6 172014040 172014216 -17265338 - MER45A DNA AcHobo 0 178 1 693 87 10 10 chr6 172014514 172014618 -17264936 + THE1B LTR MaLR 1 104 -260 2128 104 0 0 chr6 172015006 172015332 -17264222 + AluSc SINE Alu 1 326 0 321 89 0 0 chr6 172016033 172016078 -17263476 + (CCTG)n Simple_repeat Simple_repeat 2 46 0 238 324 147 29 chr6 172016121 172016325 -17263229 - L2 LINE L2 -509 2805 2578 1549 134 62 0 chr6 172017322 172017614 -17261940 - MER45B DNA AcHobo -31 1009 700 * 1715 217 96 5 chr6 172017612 172018059 -17261495 - MER45B DNA AcHobo -545 495 8 197 336 29 19 chr6 172018508 172018612 -17260942 - L2 LINE L2 -9 3263 3159 568 100 0 20 chr6 172018781 172018881 -17260673 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 24 0 0 0 chr6 172020062 172020086 -17259468 + AT_rich Low_complexity Low_complexity 1 24 0 250 303 223 19 chr6 172020367 172020578 -17258976 + MIR SINE MIR 8 261 -1 23 33 0 0 chr6 172021588 172021618 -17257936 + AT_rich Low_complexity Low_complexity 1 30 0 2134 131 3 0 chr6 172021659 172021965 -17257589 - AluSg SINE Alu -3 307 1 2155 108 3 17 chr6 172022063 172022359 -17257195 + AluSc SINE Alu 1 292 -17 339 179 39 0 chr6 172026359 172026437 -17253117 - MLT2D LTR ERVL -333 81 1 210 214 175 71 chr6 172027143 172027269 -17252285 + MIR SINE MIR 121 259 -3 371 56 19 0 chr6 172027417 172027471 -17252083 - MLT2A2 LTR ERVL 0 453 399 248 240 0 0 chr6 172027471 172027521 -17252033 + (CATA)n Simple_repeat Simple_repeat 3 52 0 * 663 347 48 3 chr6 172027478 172027817 -17251737 + (TA)n Simple_repeat Simple_repeat 1 354 0 783 297 30 4 chr6 172027817 172028049 -17251505 - MLT1K LTR MaLR -329 259 22 298 266 32 11 chr6 172028840 172028934 -17250620 + MIR3 SINE MIR 100 195 -13 901 262 185 16 chr6 172029057 172029549 -17250005 + MER90 LTR ERV1 1 575 0 260 360 48 32 chr6 172029857 172029982 -17249572 - MER5B DNA MER1_type -51 127 1 410 235 130 9 chr6 172030611 172030726 -17248828 - MER94 DNA DNA -1 133 5 215 276 32 8 chr6 172030997 172031120 -17248434 + T-rich Low_complexity Low_complexity 3 128 0 2151 128 0 3 chr6 172033163 172033459 -17246095 - AluSx SINE Alu -17 295 1 1880 102 109 14 chr6 172033783 172034066 -17245488 + AluSx SINE Alu 3 312 0 217 316 33 26 chr6 172035024 172035160 -17244394 - MIR SINE MIR -88 120 19 26 0 0 0 chr6 172036698 172036724 -17242830 + AT_rich Low_complexity Low_complexity 1 26 0 313 296 9 0 chr6 172036930 172037045 -17242509 + L1MEd LINE L1 904 1019 -5100 1544 139 52 0 chr6 172037058 172037309 -17242245 + AluSx SINE Alu 49 312 0 4728 177 14 32 chr6 172037325 172038290 -17241264 - L1M2 LINE L1 -1814 4332 3385 4842 163 17 13 chr6 172038290 172039215 -17240339 + L1M2 LINE L1 4361 5302 -998 185 0 40 0 chr6 172039215 172039240 -17240314 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 4842 163 17 13 chr6 172039240 172039700 -17239854 + L1M2 LINE L1 5302 5759 -541 2332 236 112 29 chr6 172040131 172040451 -17239103 - L1M4 LINE L1 -5754 788 496 2487 52 13 10 chr6 172040451 172040760 -17238794 - AluY SINE Alu -1 310 1 2332 236 112 29 chr6 172040760 172041164 -17238390 - L1M4 LINE L1 -6046 496 4 317 240 139 8 chr6 172041326 172041455 -17238099 + L2 LINE L2 3168 3313 0 23 0 0 0 chr6 172042204 172042227 -17237327 + AT_rich Low_complexity Low_complexity 1 23 0 1085 159 128 8 chr6 172042243 172042494 -17237060 - L1MA4 LINE L1 -7 6293 6013 251 175 18 0 chr6 172045125 172045182 -17234372 + CT-rich Low_complexity Low_complexity 2 59 0 446 283 8 17 chr6 172045241 172045361 -17234193 + MIR3 SINE MIR 13 131 -77 225 344 48 8 chr6 172047458 172047583 -17231971 + MIR SINE MIR 133 262 0 618 248 70 119 chr6 172047666 172048682 -17230872 - L1MEd LINE L1 -2218 3911 2946 23 0 0 0 chr6 172048755 172048778 -17230776 + AT_rich Low_complexity Low_complexity 1 23 0 412 165 10 10 chr6 172048778 172048875 -17230679 + (CA)n Simple_repeat Simple_repeat 2 98 0 763 281 73 30 chr6 172049841 172050527 -17229027 - L1MEd LINE L1 -4562 1748 977 334 143 16 32 chr6 172050782 172050845 -17228709 - U7 snRNA snRNA 0 63 2 206 254 18 0 chr6 172051605 172051660 -17227894 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 1861 132 119 6 chr6 172051866 172052193 -17227361 + THE1B LTR MaLR 1 364 0 236 354 54 23 chr6 172054491 172054621 -17224933 + MIR SINE MIR 65 198 -64 310 196 9 69 chr6 172055547 172055655 -17223899 + L1MC4 LINE L1 1995 6983 -1339 2543 140 27 63 chr6 172055676 172056197 -17223357 + L1MA6 LINE L1 5782 6283 -17 656 268 124 18 chr6 172056347 172056838 -17222716 + L1MEc LINE L1 1242 1764 -4451 320 265 47 71 chr6 172056897 172057108 -17222446 + L1MEc LINE L1 2442 2647 -3568 2177 150 3 3 chr6 172057537 172057884 -17221670 - MER7A DNA MER2_type 0 346 2 250 336 9 9 chr6 172060114 172060227 -17219327 + L1MC/D LINE L1 5729 5841 -1967 2777 262 78 17 chr6 172060383 172060605 -17218949 + L1ME1 LINE L1 34 241 -6155 2098 132 36 33 chr6 172060605 172060968 -17218586 - THE1B LTR MaLR 0 364 1 2777 262 78 17 chr6 172060968 172061739 -17217815 + L1ME1 LINE L1 241 1088 -5308 1660 143 54 83 chr6 172061739 172062125 -17217429 + THE1C LTR MaLR 1 375 0 4775 263 69 36 chr6 172062127 172064448 -17215106 + L1ME1 LINE L1 2104 4448 -1767 1270 268 30 44 chr6 172064556 172065030 -17214524 + L1ME1 LINE L1 5764 6230 -5 353 317 17 17 chr6 172065111 172065231 -17214323 + MIR3 SINE MIR 60 179 -29 278 287 81 29 chr6 172065293 172065429 -17214125 - MIR3 SINE MIR -63 145 3 207 0 0 0 chr6 172065994 172066017 -17213537 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 431 245 85 3 chr6 172067453 172067638 -17211916 - L1MA10 LINE L1 -6 6172 5971 764 305 34 24 chr6 172067679 172067971 -17211583 + MER102b DNA MER1_type 22 316 -25 219 343 75 62 chr6 172068224 172068370 -17211184 + L2 LINE L2 3118 3265 -7 387 0 0 0 chr6 172068428 172068471 -17211083 + (TG)n Simple_repeat Simple_repeat 2 44 0 2353 94 0 7 chr6 172070761 172071068 -17208486 + AluSx SINE Alu 1 305 -7 2194 117 114 25 chr6 172072895 172073341 -17206213 - LTR21A LTR ERV1 -19 486 1 364 234 75 0 chr6 172073401 172073495 -17206059 + MIR SINE MIR 48 148 -114 216 224 20 0 chr6 172073829 172073878 -17205676 - MIR SINE MIR -139 69 20 534 326 54 0 chr6 172075069 172075253 -17204301 - MIR SINE MIR -32 230 37 288 327 77 61 chr6 172075371 172075781 -17203773 - L2 LINE L2 -188 3084 2658 295 312 57 47 chr6 172075955 172076234 -17203320 - L2 LINE L2 -938 2376 2095 401 311 52 30 chr6 172076363 172076498 -17203056 - MIR3 SINE MIR -62 146 9 1194 214 38 16 chr6 172076499 172076812 -17202742 - MER58B DNA MER1_type -4 337 18 2090 145 0 0 chr6 172076881 172077177 -17202377 + AluSx SINE Alu 1 296 -16 354 355 50 0 chr6 172078606 172078747 -17200807 - MIR SINE MIR -21 241 94 2022 159 42 36 chr6 172080527 172081069 -17198485 + MLT2A2 LTR ERVL 2 554 0 1481 87 0 5 chr6 172082454 172082650 -17196904 - AluSq SINE Alu -118 195 1 1552 209 29 27 chr6 172082947 172083359 -17196195 + MER96B DNA MER1_type 1 413 -4 297 293 60 45 chr6 172084398 172084531 -17195023 - L2 LINE L2 -1 3271 3137 709 283 11 16 chr6 172084625 172084812 -17194742 + MIR SINE MIR 77 262 0 219 283 144 44 chr6 172084848 172085028 -17194526 - L2 LINE L2 -177 3095 2898 184 286 41 0 chr6 172085265 172085314 -17194240 + MIR SINE MIR 206 256 -6 198 0 0 0 chr6 172085989 172086011 -17193543 + (A)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr6 172087445 172087470 -17192084 + AT_rich Low_complexity Low_complexity 1 25 0 213 132 79 0 chr6 172087759 172087797 -17191757 - L2 LINE L2 -1 3312 3272 185 314 20 0 chr6 172088308 172088359 -17191195 - L2 LINE L2 -86 3227 3176 493 277 146 52 chr6 172090469 172090736 -17188818 - L2 LINE L2 0 3272 2981 786 278 9 9 chr6 172090825 172091041 -17188513 - MIR SINE MIR -39 223 8 462 300 8 0 chr6 172091092 172091222 -17188332 - MIR SINE MIR -10 252 122 22 35 0 0 chr6 172091879 172091908 -17187646 + AT_rich Low_complexity Low_complexity 1 29 0 602 258 102 28 chr6 172095666 172095988 -17183566 + L1ME LINE L1 5373 5718 -403 820 176 88 22 chr6 172096136 172096318 -17183236 + MSTD LTR MaLR 203 396 0 24 67 0 0 chr6 172096987 172097032 -17182522 + AT_rich Low_complexity Low_complexity 1 45 0 1998 109 29 45 chr6 172097560 172097872 -17181682 - AluSq SINE Alu -6 307 1 357 271 113 45 chr6 172098035 172098168 -17181386 - L2 LINE L2 -10 3303 3162 292 102 82 10 chr6 172098265 172098363 -17181191 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 204 67 0 0 chr6 172099016 172099046 -17180508 + (CA)n Simple_repeat Simple_repeat 1 30 0 191 36 36 0 chr6 172099226 172099254 -17180300 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 333 294 28 18 chr6 172099893 172100002 -17179552 + L2 LINE L2 3200 3309 -4 1528 197 105 32 chr6 172101297 172101765 -17177789 - MER92B LTR ERV1 -134 502 1 2237 132 0 0 chr6 172102238 172102542 -17177012 + AluSx SINE Alu 1 304 -8 2261 112 0 0 chr6 172104468 172104763 -17174791 + AluSc SINE Alu 1 295 -14 924 172 0 12 chr6 172104941 172105104 -17174450 + AluJ SINE Alu 5 165 -147 781 209 0 0 chr6 172105283 172105422 -17174132 + AluJ SINE Alu 167 305 -7 683 199 3 0 chr6 172105756 172106107 -17173447 + (CA)n Simple_repeat Simple_repeat 1 352 0 1896 216 13 8 chr6 172106138 172106532 -17173022 + MSTD LTR MaLR 1 396 0 683 149 0 8 chr6 172106978 172107099 -17172455 + ERVL-B2 LTR ERVL 5638 5757 -7 1160 177 0 0 chr6 172107099 172107302 -17172252 + MLT2B2 LTR ERVL 1 203 -312 1278 149 0 45 chr6 172108083 172108304 -17171250 + AluJb SINE Alu 86 296 -16 463 196 122 0 chr6 172109288 172109395 -17170159 - MIR SINE MIR -111 151 32 286 252 25 13 chr6 172109484 172109643 -17169911 + CT-rich Low_complexity Low_complexity 4 164 0 266 326 23 0 chr6 172109643 172109729 -17169825 - L2 LINE L2 -5 3308 3221 290 202 40 50 chr6 172109896 172109995 -17169559 - MLT1I LTR MaLR -195 214 117 231 238 71 87 chr6 172110055 172110181 -17169373 - L2 LINE L2 -95 3218 3095 364 224 0 0 chr6 172110259 172110344 -17169210 + MLT1E LTR MaLR 509 593 0 833 249 80 74 chr6 172110747 172110826 -17168728 - L1ME3A LINE L1 -286 5884 5807 1789 148 28 21 chr6 172110826 172111117 -17168437 - AluSx SINE Alu 0 312 20 833 249 80 74 chr6 172111117 172111564 -17167990 - L1ME3A LINE L1 -363 5807 5355 423 228 0 10 chr6 172111591 172111692 -17167862 - LTR33 LTR ERVL 0 521 422 374 268 86 53 chr6 172111841 172112050 -17167504 - LTR33 LTR ERVL -301 220 5 197 330 131 34 chr6 172112108 172112284 -17167270 - L3 LINE CR1 -78 1499 1307 4654 223 27 7 chr6 172112312 172113645 -17165909 - L1 LINE L1 -1724 4422 3063 1570 172 54 3 chr6 172113641 172113995 -17165559 + L1 LINE L1 4427 4798 -1348 * 697 241 19 0 chr6 172114051 172114258 -17165296 + L1 LINE L1 3277 3487 -2659 5204 149 34 30 chr6 172114261 172115617 -17163937 + L1PA16 LINE L1 4800 6157 -9 475 337 39 35 chr6 172115690 172115972 -17163582 - L3 LINE CR1 -601 976 694 229 309 146 0 chr6 172116012 172116122 -17163432 + MIR SINE MIR 53 178 -84 180 0 0 0 chr6 172116566 172116586 -17162968 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 377 290 89 40 chr6 172117413 172117661 -17161893 - MLT1K LTR MaLR -15 573 314 243 133 47 70 chr6 172117713 172117841 -17161713 + (TA)n Simple_repeat Simple_repeat 1 125 0 25 31 0 0 chr6 172117933 172117965 -17161589 + GC_rich Low_complexity Low_complexity 1 32 0 222 159 23 0 chr6 172118140 172118184 -17161370 + (TA)n Simple_repeat Simple_repeat 2 46 0 356 322 127 25 chr6 172118203 172118439 -17161115 + MIR SINE MIR 1 260 -2 21 36 0 0 chr6 172118568 172118596 -17160958 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr6 172118634 172118669 -17160885 + AT_rich Low_complexity Low_complexity 1 35 0 415 351 18 0 chr6 172118958 172119123 -17160431 - L2 LINE L2 -258 3055 2888 1951 122 56 61 chr6 172119252 172119629 -17159925 - THE1C LTR MaLR 0 375 1 1777 180 3 0 chr6 172119697 172120019 -17159535 + AluJo SINE Alu 1 323 0 603 235 52 63 chr6 172121816 172122258 -17157296 - L1ME4a LINE L1 -1 6120 5684 1858 169 35 72 chr6 172122374 172122777 -17156777 - MER61D LTR ERV1 0 501 114 10794 150 28 25 chr6 172122814 172123930 -17155624 - HUERS-P3b LTR ERV1 -2 7416 6306 1980 169 36 25 chr6 172123930 172124290 -17155264 + THE1B LTR MaLR 1 364 0 10794 150 28 25 chr6 172124290 172126904 -17152650 - HUERS-P3b LTR ERV1 -1112 6306 2226 4387 154 44 53 chr6 172126904 172128026 -17151528 - MER61D-int LTR ERV1 -299 4918 3787 395 208 0 0 chr6 172128026 172128103 -17151451 - MADE1 DNA Mariner 0 80 4 4387 154 44 53 chr6 172128103 172128132 -17151422 - MER61D-int LTR ERV1 -1430 3787 3759 192 40 0 0 chr6 172128132 172128157 -17151397 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4387 154 44 53 chr6 172128157 172128171 -17151383 - MER61D-int LTR ERV1 -1458 3759 695 833 138 28 106 chr6 172128175 172128392 -17151162 - MER61D-int LTR ERV1 -4763 454 255 2372 128 26 13 chr6 172128828 172129210 -17150344 - MER61D LTR ERV1 0 501 115 186 167 0 0 chr6 172129485 172129521 -17150033 + (TA)n Simple_repeat Simple_repeat 2 37 0 566 299 121 48 chr6 172129725 172130220 -17149334 - L1ME3A LINE L1 -221 5949 5419 677 277 68 55 chr6 172130256 172130819 -17148735 - L1ME3A LINE L1 -813 5333 4764 1124 189 42 0 chr6 172131068 172131258 -17148296 + AluJb SINE Alu 85 282 -30 290 260 16 8 chr6 172131304 172131431 -17148123 - L1ME3A LINE L1 -1636 4510 4383 1294 288 56 9 chr6 172132015 172132550 -17147004 - L1MC4a LINE L1 -1867 5924 5365 654 299 87 67 chr6 172132611 172132904 -17146650 - L1MC4a LINE L1 -4862 1257 972 2126 120 0 3 chr6 172132904 172133196 -17146358 + AluSx SINE Alu 1 291 -21 654 299 87 67 chr6 172133196 172133922 -17145632 - L1MC4a LINE L1 -5147 972 217 599 219 38 19 chr6 172134065 172134225 -17145329 - L1ME3A LINE L1 -8 6162 6000 315 247 0 3 chr6 172134282 172134377 -17145177 + L1ME3 LINE L1 5854 5947 -223 467 305 116 70 chr6 172134687 172135427 -17144127 - L1M4 LINE L1 -1302 4844 4071 1128 154 89 131 chr6 172136727 172137155 -17142399 - MER4C LTR ERV1 -10 455 46 286 140 0 18 chr6 172137336 172137393 -17142161 - MER4C LTR ERV1 -409 56 1 2229 127 0 0 chr6 172137617 172137925 -17141629 - AluSg SINE Alu -2 308 1 586 322 62 4 chr6 172138460 172138687 -17140867 - MIR SINE MIR -4 258 19 2246 132 0 0 chr6 172138805 172139115 -17140439 + AluSx SINE Alu 3 312 0 1819 195 25 8 chr6 172139388 172139747 -17139807 + MLT1A1 LTR MaLR 1 365 0 1742 153 7 11 chr6 172140195 172140477 -17139077 + AluSg SINE Alu 1 281 -29 1112 118 5 59 chr6 172140680 172140900 -17138654 + THE1A LTR MaLR 148 355 0 753 240 87 12 chr6 172140994 172141248 -17138306 - MLT1B LTR MaLR -4 386 114 2058 125 3 0 chr6 172141253 172141540 -17138014 + AluSq SINE Alu 2 289 -24 306 208 92 75 chr6 172141583 172141703 -17137851 - MLT1B LTR MaLR -268 122 1 366 238 151 64 chr6 172142131 172142303 -17137251 - MER5A DNA MER1_type 0 189 3 28 0 0 0 chr6 172143080 172143108 -17136446 + AT_rich Low_complexity Low_complexity 1 28 0 255 140 0 0 chr6 172144127 172144177 -17135377 + (TTCA)n Simple_repeat Simple_repeat 4 53 0 243 318 57 23 chr6 172144384 172144472 -17135082 - MER91C DNA MER1_type -32 108 18 225 282 55 98 chr6 172144581 172144744 -17134810 - L2 LINE L2 -434 2880 2725 418 283 31 57 chr6 172145470 172145629 -17133925 + MER5A DNA MER1_type 35 189 0 911 239 35 4 chr6 172145974 172146204 -17133350 + MLT1D LTR MaLR 267 503 -2 1765 232 45 28 chr6 172146716 172147034 -17132520 + LTR40a LTR ERVL 3 335 -184 2685 169 60 28 chr6 172147034 172147084 -17132470 - MLT2B3 LTR ERVL -4 550 503 372 59 0 0 chr6 172147084 172147135 -17132419 + (CA)n Simple_repeat Simple_repeat 1 51 0 2685 169 60 28 chr6 172147135 172147617 -17131937 - MLT2B3 LTR ERVL -51 503 1 1765 232 45 28 chr6 172147617 172147806 -17131748 + LTR40a LTR ERVL 335 519 0 308 252 25 17 chr6 172147947 172148066 -17131488 + (TA)n Simple_repeat Simple_repeat 2 121 0 384 277 0 0 chr6 172148080 172148257 -17131297 + (TA)n Simple_repeat Simple_repeat 1 177 0 27 29 0 0 chr6 172148493 172148527 -17131027 + AT_rich Low_complexity Low_complexity 1 34 0 565 181 19 0 chr6 172148641 172148746 -17130808 - MLT1D LTR MaLR -398 107 1 1162 195 47 113 chr6 172148749 172149174 -17130380 - MLT1D-int LTR MaLR -2 1369 973 640 272 65 27 chr6 172149339 172149911 -17129643 - L1M4c LINE L1 -4085 2561 1864 1281 202 87 84 chr6 172149931 172150031 -17129523 - L1M4c LINE L1 -5162 1380 1282 2212 125 13 0 chr6 172150031 172150335 -17129219 - AluSg SINE Alu -2 308 1 1281 202 87 84 chr6 172150335 172150821 -17128733 - L1M4c LINE L1 -5260 1282 789 204 40 0 0 chr6 172150821 172150846 -17128708 + (TC)n Simple_repeat Simple_repeat 1 25 0 183 50 100 0 chr6 172150859 172150899 -17128655 + (CCGCG)n Simple_repeat Simple_repeat 4 47 0 * 270 125 0 0 chr6 172150897 172150945 -17128609 + (C)n Simple_repeat Simple_repeat 1 48 0 314 248 271 27 chr6 172150945 172151207 -17128347 + L1M2 LINE L1 709 1034 -5815 180 0 0 0 chr6 172151843 172151863 -17127691 + (A)n Simple_repeat Simple_repeat 1 20 0 273 340 37 42 chr6 172153341 172153532 -17126022 + L2 LINE L2 2864 3053 -219 200 345 140 20 chr6 172153575 172153775 -17125779 + MIR SINE MIR 20 243 -19 12459 106 19 57 chr6 172154715 172157629 -17121925 + L1PA7 LINE L1 1 2961 -3500 224 253 0 24 chr6 172157907 172157990 -17121564 + (TA)n Simple_repeat Simple_repeat 2 82 0 23 33 0 0 chr6 172158071 172158101 -17121453 + AT_rich Low_complexity Low_complexity 1 30 0 7893 97 8 2 chr6 172158192 172160104 -17119450 + L1PA7 LINE L1 4548 6469 0 618 273 34 38 chr6 172160226 172160435 -17119119 + L2 LINE L2 3106 3313 0 1830 138 12 22 chr6 172160556 172160875 -17118679 + THE1C LTR MaLR 1 316 -59 748 300 36 54 chr6 172162543 172162876 -17116678 - L3 LINE CR1 -13 1564 1238 21 0 0 0 chr6 172164671 172164692 -17114862 + AT_rich Low_complexity Low_complexity 1 21 0 612 157 26 143 chr6 172266304 172266360 -17013194 - MLT1C LTR MaLR -256 211 150 2163 129 0 0 chr6 172266360 172266663 -17012891 + AluSq SINE Alu 1 303 -10 612 157 26 143 chr6 172266663 172266836 -17012718 - MLT1C LTR MaLR -317 150 9 404 258 161 27 chr6 172267188 172267448 -17012106 - L1ME4a LINE L1 -239 5882 5588 330 67 0 0 chr6 172267814 172267859 -17011695 + (CA)n Simple_repeat Simple_repeat 2 46 0 200 159 91 0 chr6 172268698 172268742 -17010812 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 349 236 52 29 chr6 172268742 172268857 -17010697 - L1MC4 LINE L1 -1339 6703 6614 2244 152 39 22 chr6 172268859 172269274 -17010280 + Tigger2a DNA MER2_type 12 433 -1 276 30 0 0 chr6 172271264 172271297 -17008257 + (TA)n Simple_repeat Simple_repeat 1 33 0 2057 105 0 53 chr6 172272414 172272718 -17006836 + AluSg SINE Alu 1 288 -22 417 327 19 6 chr6 172273190 172273349 -17006205 - MIR SINE MIR 0 262 102 290 328 99 35 chr6 172273360 172273531 -17006023 + L2 LINE L2 2897 3078 -194 1241 202 26 0 chr6 172273686 172273919 -17005635 + MER8 DNA MER2_type 1 239 0 425 319 6 35 chr6 172274233 172274402 -17005152 + MER5B DNA MER1_type 1 164 -14 247 317 57 24 chr6 172274600 172274723 -17004831 + L2 LINE L2 2916 3042 -230 323 209 45 75 chr6 172274797 172274931 -17004623 + MER5B DNA MER1_type 18 147 -31 1480 165 0 25 chr6 172275195 172275432 -17004122 - AluJb SINE Alu -81 231 1 388 274 17 87 chr6 172275889 172276188 -17003366 + MLT1I LTR MaLR 98 375 -34 550 246 138 44 chr6 172276189 172276551 -17003003 + L1MC5 LINE L1 7530 7925 -36 336 295 156 16 chr6 172278262 172278384 -17001170 + MER91C DNA MER1_type 2 140 0 362 280 50 10 chr6 172279565 172279665 -16999889 + MIR SINE MIR 2 105 -157 1813 163 46 27 chr6 172280428 172280796 -16998758 - THE1C LTR MaLR 0 375 1 187 369 25 57 chr6 172280826 172280948 -16998606 - MIR SINE MIR -127 135 18 * 296 305 78 32 chr6 172280947 172281101 -16998453 - MIR SINE MIR -95 167 7 304 325 9 9 chr6 172281938 172282052 -16997502 - L2 LINE L2 0 3313 3200 1826 174 12 68 chr6 172282069 172282482 -16997072 - MLT1B LTR MaLR 0 390 1 2347 103 0 0 chr6 172283700 172284001 -16995553 - AluSx SINE Alu -11 301 1 1177 203 27 40 chr6 172284410 172284536 -16995018 - MER58B DNA MER1_type -2079 341 215 2465 151 11 25 chr6 172284536 172284974 -16994580 - Tigger2a DNA MER2_type 0 434 3 1177 203 27 40 chr6 172284974 172285148 -16994406 - MER58B DNA MER1_type -2205 215 45 27 0 0 0 chr6 172285411 172285438 -16994116 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr6 172286706 172286732 -16992822 + AT_rich Low_complexity Low_complexity 1 26 0 4907 132 1 35 chr6 172287231 172287631 -16991923 - L1PA13 LINE L1 -1 6162 5750 1909 123 45 89 chr6 172287631 172287814 -16991740 + THE1B LTR MaLR 1 160 -204 2032 113 0 45 chr6 172287814 172288125 -16991429 + AluSg SINE Alu 6 302 -8 1909 123 45 89 chr6 172288125 172288322 -16991232 + THE1B LTR MaLR 160 364 0 4907 132 1 35 chr6 172288322 172288797 -16990757 - L1PA13 LINE L1 -413 5750 5317 * 5190 165 27 24 chr6 172288795 172293267 -16986287 - L1PA10 LINE L1 0 6168 1607 2467 228 101 31 chr6 172293683 172293807 -16985747 + L1ME1 LINE L1 1589 1703 -4512 2240 93 7 7 chr6 172293807 172294096 -16985458 + AluSc SINE Alu 1 289 -20 2467 228 101 31 chr6 172294096 172295474 -16984080 + L1ME1 LINE L1 1703 3159 -3056 1687 255 120 11 chr6 172295473 172296117 -16983437 + L1ME1 LINE L1 5510 6223 -12 * 260 286 71 14 chr6 172296405 172296545 -16983009 - MLT2F LTR ERVL -39 624 477 501 296 229 8 chr6 172296622 172296889 -16982665 - MLT2F LTR ERVL -321 342 17 211 172 0 47 chr6 172296912 172296976 -16982578 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 2119 108 0 3 chr6 172297033 172297319 -16982235 + AluY SINE Alu 18 302 -9 637 293 45 9 chr6 172297327 172297549 -16982005 - MIR SINE MIR -17 245 16 1673 97 0 16 chr6 172298994 172299242 -16980312 - L1PA5 LINE L1 0 6154 5911 180 26 26 51 chr6 172299269 172299308 -16980246 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 6735 140 33 12 chr6 172299444 172300649 -16978905 - Tigger3b DNA MER2_type 0 1231 1 2343 109 0 0 chr6 172301951 172302255 -16977299 - AluSx SINE Alu -8 304 1 181 353 41 25 chr6 172302707 172302829 -16976725 + L2 LINE L2 3180 3303 -10 221 385 103 14 chr6 172304066 172304279 -16975275 - MIR SINE MIR -11 251 20 534 239 77 0 chr6 172304432 172304549 -16975005 - L2 LINE L2 0 3313 3188 210 214 58 29 chr6 172304555 172304658 -16974896 + (TATAG)n Simple_repeat Simple_repeat 4 109 0 4652 282 81 23 chr6 172304837 172306688 -16972866 - L2 LINE L2 -158 3155 1199 473 326 87 6 chr6 172307108 172307280 -16972274 - MIR3 SINE MIR -5 203 18 1667 117 66 26 chr6 172308610 172308906 -16970648 + AluSq SINE Alu 1 307 0 655 308 31 18 chr6 172312593 172312820 -16966734 - MIR SINE MIR -13 249 20 5838 154 40 11 chr6 172314025 172315163 -16964391 - Tigger3b DNA MER2_type -60 1171 1 312 322 53 19 chr6 172315320 172315528 -16964026 + LTR33A LTR ERVL 1 215 -308 405 307 114 0 chr6 172315611 172315787 -16963767 + LTR33A LTR ERVL 318 513 -10 2004 152 3 3 chr6 172316828 172317125 -16962429 - AluJb SINE Alu -15 297 1 571 312 43 26 chr6 172317149 172317383 -16962171 + MIR SINE MIR 9 246 -16 1998 99 4 0 chr6 172320214 172320476 -16959078 - AluSp SINE Alu -13 300 38 839 105 0 0 chr6 172320520 172320634 -16958920 - AluSg/x SINE Alu -14 298 185 1184 225 62 9 chr6 172321573 172321897 -16957657 - LTR16C LTR ERVL 0 491 151 357 298 87 25 chr6 172322147 172322308 -16957246 + HAL1 LINE L1 1115 1285 -1222 4515 181 25 21 chr6 172322643 172323964 -16955590 + L1MB8 LINE L1 4857 6178 0 277 298 66 29 chr6 172323947 172324219 -16955335 + L1MC4a LINE L1 5029 5310 -836 * 403 285 90 0 chr6 172324613 172324843 -16954711 + L1MC4a LINE L1 5373 5634 -487 284 307 31 26 chr6 172324882 172325074 -16954480 + L1MC4a LINE L1 5730 5922 -1886 1232 198 10 13 chr6 172325221 172325524 -16954030 - MER33 DNA MER1_type -22 302 1 347 236 11 22 chr6 172327099 172327188 -16952366 + L2 LINE L2 3224 3311 -2 408 221 16 49 chr6 172329248 172329370 -16950184 - L2 LINE L2 -12 3301 3184 230 278 278 0 chr6 172329417 172329532 -16950022 + L2 LINE L2 2585 2731 -583 794 303 35 57 chr6 172329678 172330045 -16949509 + L2 LINE L2 2935 3293 -20 243 79 0 0 chr6 172330047 172330085 -16949469 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 244 246 0 0 chr6 172330454 172330511 -16949043 + L2 LINE L2 3257 3313 0 2528 175 11 0 chr6 172331011 172331451 -16948103 + L1MB3 LINE L1 5739 6183 0 2202 90 0 4 chr6 172334586 172334897 -16944657 + AluSq SINE Alu 6 315 0 200 309 223 29 chr6 172334969 172335108 -16944446 - MIR SINE MIR -91 171 6 230 338 99 14 chr6 172336375 172336517 -16943037 + L2 LINE L2 2579 2732 -582 2243 62 18 0 chr6 172336689 172336964 -16942590 - AluY SINE Alu -2 309 30 2238 95 3 0 chr6 172338070 172338380 -16941174 - AluSq SINE Alu 0 311 1 583 238 146 61 chr6 172338981 172339309 -16940245 + MLT1J LTR MaLR 156 511 0 2586 48 0 16 chr6 172339346 172339659 -16939895 - AluY SINE Alu -3 308 1 2420 174 0 0 chr6 172340065 172340428 -16939126 + MLT1A1 LTR MaLR 1 363 -2 2061 90 0 53 chr6 172340808 172341109 -16938445 - AluSg SINE Alu -21 289 5 2034 103 0 34 chr6 172341538 172341851 -16937703 - AluSg SINE Alu 0 303 1 272 300 68 95 chr6 172342222 172342559 -16936995 - L2 LINE L2 -108 3164 2837 1723 134 45 31 chr6 172342676 172342968 -16936586 - AluSx SINE Alu -16 296 1 208 191 43 0 chr6 172344722 172344769 -16934785 + GA-rich Low_complexity Low_complexity 4 52 0 3025 99 0 0 chr6 172346000 172346375 -16933179 - THE1C LTR MaLR 0 375 1 238 293 20 0 chr6 172348177 172348276 -16931278 + L1ME1 LINE L1 64 164 -5906 1008 212 58 71 chr6 172348282 172348697 -16930857 - MLT1A1 LTR MaLR 0 365 1 1562 256 136 55 chr6 172349175 172350212 -16929342 + L1ME1 LINE L1 270 1222 -5039 2274 100 19 13 chr6 172350212 172350522 -16929032 + AluSx SINE Alu 1 312 0 1562 256 136 55 chr6 172350522 172351233 -16928321 + L1ME1 LINE L1 1222 2209 -4052 1785 172 10 3 chr6 172351233 172351529 -16928025 + AluJb SINE Alu 1 298 -14 1562 256 136 55 chr6 172351529 172351709 -16927845 + L1ME1 LINE L1 2209 2373 -3888 290 278 31 10 chr6 172351726 172351823 -16927731 + L1M3 LINE L1 4855 4953 -1193 371 138 46 15 chr6 172351879 172351944 -16927610 + FRAM/FAM SINE Alu 1 60 -106 2079 167 30 19 chr6 172351978 172352643 -16926911 + L1M3 LINE L1 4981 5660 -508 401 167 0 0 chr6 172352636 172352702 -16926852 - L1M4 LINE L1 -3124 3022 2957 * 22 88 0 0 chr6 172352899 172352956 -16926598 + AT_rich Low_complexity Low_complexity 1 57 0 2075 148 21 9 chr6 172353095 172353420 -16926134 + MLT2B1 LTR ERVL 1 329 -191 3682 241 36 58 chr6 172353424 172353775 -16925779 + L1ME1 LINE L1 3465 3822 -2278 2490 66 0 3 chr6 172353775 172354077 -16925477 + AluY SINE Alu 1 301 -10 3682 241 36 58 chr6 172354077 172355690 -16923864 + L1ME1 LINE L1 3822 5469 -631 2088 141 24 40 chr6 172355690 172356060 -16923494 + THE1B LTR MaLR 1 364 0 3682 241 36 58 chr6 172356060 172356258 -16923296 + L1ME1 LINE L1 5469 5670 -430 1927 82 4 0 chr6 172356258 172356503 -16923051 - AluY SINE Alu -10 301 56 3682 241 36 58 chr6 172356503 172356689 -16922865 + L1ME1 LINE L1 5670 5859 -241 1770 233 17 44 chr6 172356689 172357166 -16922388 - MLT1C LTR MaLR -3 464 1 3682 241 36 58 chr6 172357166 172357539 -16922015 + L1ME1 LINE L1 5859 6066 -34 5554 118 7 15 chr6 172357923 172358779 -16920775 - L1PA14 LINE L1 0 6161 5313 26 30 0 0 chr6 172359013 172359046 -16920508 + AT_rich Low_complexity Low_complexity 1 33 0 309 305 30 37 chr6 172359299 172359463 -16920091 + MLT1J LTR MaLR 44 206 -305 338 244 271 9 chr6 172360589 172360814 -16918740 + L1ME4a LINE L1 5838 6121 0 290 324 14 22 chr6 172360830 172360969 -16918585 + L1ME4a LINE L1 5881 6018 -103 1810 140 19 46 chr6 172361337 172361644 -16917910 + AluJo SINE Alu 14 312 0 202 236 0 36 chr6 172361993 172362048 -16917506 + GA-rich Low_complexity Low_complexity 5 57 0 267 152 0 0 chr6 172362329 172362375 -16917179 + (TA)n Simple_repeat Simple_repeat 2 47 0 228 182 0 0 chr6 172362376 172362420 -16917134 - LTR66 LTR ERVL -172 438 395 361 252 17 17 chr6 172363254 172363369 -16916185 + L3b LINE CR1 1270 1384 -199 2039 131 0 20 chr6 172363417 172363723 -16915831 - AluSg SINE Alu -10 300 1 1080 189 14 54 chr6 172363868 172364090 -16915464 - MER20 DNA MER1_type -3 216 4 246 105 0 0 chr6 172364588 172364626 -16914928 + (TC)n Simple_repeat Simple_repeat 2 39 0 288 0 0 0 chr6 172364931 172364963 -16914591 + (TG)n Simple_repeat Simple_repeat 1 32 0 493 335 148 32 chr6 172366609 172367367 -16912187 + L2 LINE L2 1537 2382 -932 1045 236 208 5 chr6 172369710 172370104 -16909450 - L1ME3 LINE L1 -9 6153 5680 1170 204 22 26 chr6 172370108 172370378 -16909176 - L1ME3 LINE L1 -575 5587 5319 247 284 0 23 chr6 172370810 172370898 -16908656 - L2 LINE L2 -568 2746 2661 26 0 0 0 chr6 172371263 172371289 -16908265 + AT_rich Low_complexity Low_complexity 1 26 0 2213 111 0 0 chr6 172371290 172371578 -16907976 - AluSx SINE Alu -24 288 1 2679 114 35 10 chr6 172372056 172372459 -16907095 - L1MB3 LINE L1 -2 6181 5769 393 274 9 0 chr6 172372557 172372663 -16906891 - MIR SINE MIR -6 256 150 234 178 151 0 chr6 172372945 172373018 -16906536 + L1 LINE L1 3867 3950 -2196 290 312 107 55 chr6 172373318 172373571 -16905983 + L3 LINE CR1 539 804 -773 329 217 14 0 chr6 172373630 172373699 -16905855 - MLT1K LTR MaLR 0 588 519 445 347 85 34 chr6 172374124 172374476 -16905078 + L3 LINE CR1 955 1324 -253 384 328 108 5 chr6 172374704 172374908 -16904646 + L3 LINE CR1 1351 1575 -2 516 283 132 14 chr6 172375444 172375656 -16903898 + MIR SINE MIR 20 256 -6 443 383 40 8 chr6 172375732 172375985 -16903569 - MIR SINE MIR 0 262 2 611 238 40 7 chr6 172377205 172377356 -16902198 - MER5A DNA MER1_type 0 189 34 1373 204 25 31 chr6 172377382 172377705 -16901849 - MER33 DNA MER1_type 0 324 4 688 214 5 97 chr6 172377759 172377822 -16901732 - MER5B DNA MER1_type 0 178 111 2622 55 0 0 chr6 172377822 172378133 -16901421 + AluY SINE Alu 1 311 0 688 214 5 97 chr6 172378133 172378265 -16901289 - MER5B DNA MER1_type -67 111 1 349 319 83 14 chr6 172381109 172381253 -16898301 + L2 LINE L2 3119 3272 0 343 312 26 16 chr6 172383488 172383677 -16895877 - MLT1J LTR MaLR -320 191 1 4828 33 5 0 chr6 172383803 172384384 -16895170 - L1PA4 LINE L1 0 6155 5572 546 314 90 46 chr6 172384873 172385409 -16894145 - L2 LINE L2 -7 3306 2689 546 225 43 7 chr6 172385412 172385550 -16894004 - MLT1F LTR MaLR -399 143 1 4727 237 101 40 chr6 172385550 172387791 -16891763 - L1MEd LINE L1 -1210 4919 2543 41212 31 21 1 chr6 172387855 172393885 -16885669 - L1HS LINE L1 0 6155 1 1745 259 55 21 chr6 172393955 172394717 -16884837 + L1MEc LINE L1 1264 2051 -4345 626 320 69 9 chr6 172394868 172395187 -16884367 - L1MEc LINE L1 -5965 431 94 279 328 60 80 chr6 172395283 172395484 -16884070 + L2 LINE L2 3067 3263 -9 276 309 47 37 chr6 172395554 172395745 -16883809 - MER117 DNA MER1_type 0 197 5 993 245 16 12 chr6 172395796 172396041 -16883513 - MIR SINE MIR -11 251 6 191 235 20 0 chr6 172396215 172396266 -16883288 - L2 LINE L2 0 3313 3262 189 0 0 0 chr6 172396717 172396738 -16882816 + (A)n Simple_repeat Simple_repeat 1 21 0 403 225 185 7 chr6 172398080 172398231 -16881323 - MER45A DNA AcHobo 0 178 1 279 334 130 24 chr6 172400142 172400816 -16878738 - L2 LINE L2 -202 3070 2323 453 222 0 17 chr6 172401645 172401825 -16877729 + (TA)n Simple_repeat Simple_repeat 1 177 0 1804 159 41 47 chr6 172401921 172402120 -16877434 - MLT1A1 LTR MaLR 0 365 167 2290 168 65 0 chr6 172402120 172402520 -16877034 + MSTB LTR MaLR 1 426 0 1804 159 41 47 chr6 172402520 172402685 -16876869 - MLT1A1 LTR MaLR -198 167 3 395 299 135 19 chr6 172403082 172403289 -16876265 - L1MC4a LINE L1 -1875 5933 5703 345 250 96 92 chr6 172403314 172403554 -16876000 - L1MEd LINE L1 -3795 2334 2094 218 225 38 12 chr6 172404043 172404123 -16875431 + T-rich Low_complexity Low_complexity 4 85 0 2184 223 67 24 chr6 172404140 172404848 -16874706 - L1MD3 LINE L1 -6 7989 5616 26 0 0 0 chr6 172404881 172404907 -16874647 + AT_rich Low_complexity Low_complexity 1 26 0 319 264 104 17 chr6 172405078 172405309 -16874245 - L1MEd LINE L1 -4890 1229 979 21 0 0 0 chr6 172405445 172405466 -16874088 + AT_rich Low_complexity Low_complexity 1 21 0 818 122 0 0 chr6 172405545 172405668 -16873886 - AluSg/x SINE Alu -13 297 175 766 320 58 0 chr6 172405668 172405943 -16873611 - L1MEd LINE L1 -5346 773 483 793 279 84 11 chr6 172406189 172406476 -16873078 + LTR16A LTR ERVL 143 450 0 451 281 7 26 chr6 172406605 172406758 -16872796 - L1MEd LINE L1 -5958 161 12 1599 224 28 21 chr6 172407197 172407666 -16871888 - L1ME1 LINE L1 -4 6162 5691 1016 78 42 48 chr6 172408700 172408867 -16870687 - L1PA10 LINE L1 -1 6167 6002 2467 77 0 0 chr6 172408869 172409205 -16870349 + L1P4 LINE L1 5389 5724 -444 1194 232 79 59 chr6 172409262 172409757 -16869797 + MLT1D LTR MaLR 1 505 0 277 179 0 51 chr6 172410069 172410147 -16869407 + MER103 DNA DNA 3 76 -90 1185 146 0 5 chr6 172410618 172410823 -16868731 + AluSq SINE Alu 5 307 -6 2425 138 30 23 chr6 172412146 172412575 -16866979 - MSTB1 LTR MaLR 0 432 1 340 231 172 38 chr6 172412819 172413005 -16866549 - L1ME4a LINE L1 -71 6050 5840 2192 34 0 62 chr6 172414993 172415313 -16864241 - L1PA3 LINE L1 -2259 3887 3588 12699 21 0 0 chr6 172415313 172417560 -16861994 + L1PA3 LINE L1 3906 6152 -3 258 237 10 124 chr6 172417768 172417865 -16861689 + MIR SINE MIR 53 138 -124 22 0 0 0 chr6 172418770 172418792 -16860762 + AT_rich Low_complexity Low_complexity 1 22 0 2511 113 17 11 chr6 172419128 172419490 -16860064 - THE1B LTR MaLR 0 364 1 256 161 32 0 chr6 172421822 172421884 -16857670 + CT-rich Low_complexity Low_complexity 2 65 0 196 210 97 0 chr6 172422289 172422351 -16857203 - MIR SINE MIR -85 177 110 415 186 110 0 chr6 172423918 172424036 -16855518 + L1 LINE L1 3714 3844 -2302 * 10702 178 32 14 chr6 172424018 172424420 -16855134 + L1MA9 LINE L1 2726 3119 -3193 189 0 0 0 chr6 172424420 172424441 -16855113 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 10702 178 32 14 chr6 172424441 172424473 -16855081 + L1MA9 LINE L1 3119 3149 -3163 1484 169 74 24 chr6 172424473 172424769 -16854785 + AluJo SINE Alu 1 311 -1 10702 178 32 14 chr6 172424769 172427108 -16852446 + L1MA9 LINE L1 3149 5582 -730 1792 128 0 4 chr6 172427108 172427365 -16852189 + AluSx SINE Alu 42 297 -15 10702 178 32 14 chr6 172427365 172428110 -16851444 + L1MA9 LINE L1 5582 6312 0 474 297 72 40 chr6 172428180 172428429 -16851125 - L2 LINE L2 -5 3308 3052 1786 159 3 27 chr6 172428430 172428731 -16850823 + AluJo SINE Alu 6 299 -13 1305 259 109 35 chr6 172429357 172430490 -16849064 - HAL1 LINE L1 -744 1763 395 285 346 47 0 chr6 172430531 172430658 -16848896 - HAL1 LINE L1 -964 1543 1411 192 345 145 0 chr6 172531545 172531690 -16747864 + L2 LINE L2 3147 3312 -1 682 238 52 89 chr6 172532760 172532877 -16746677 - HAL1 LINE L1 -1429 1078 958 1881 153 13 7 chr6 172532877 172533177 -16746377 + AluJb SINE Alu 1 302 -10 682 238 52 89 chr6 172533177 172533408 -16746146 - HAL1 LINE L1 -1549 958 743 21 0 0 0 chr6 172533626 172533647 -16745907 + AT_rich Low_complexity Low_complexity 1 21 0 1791 111 66 26 chr6 172533650 172533921 -16745633 + AluSx SINE Alu 2 283 -29 295 308 66 61 chr6 172533972 172534368 -16745186 - HAL1 LINE L1 -2106 401 4 2284 130 26 3 chr6 172534626 172534973 -16744581 - MSTA LTR MaLR -73 355 1 1497 179 175 3 chr6 172537256 172537553 -16742001 + MER7A DNA MER2_type 1 346 0 236 279 16 0 chr6 172537582 172537643 -16741911 + L2 LINE L2 3137 3198 -74 3355 225 67 5 chr6 172537704 172538481 -16741073 - MER99 DNA DNA -1 827 3 1031 295 87 43 chr6 172538484 172539023 -16740531 - MLT1G1 LTR MaLR -17 578 16 23 33 0 0 chr6 172540688 172540718 -16738836 + AT_rich Low_complexity Low_complexity 1 30 0 1632 251 128 42 chr6 172541833 172542813 -16736741 - L2 LINE L2 -1 3312 2236 403 360 79 38 chr6 172542974 172543394 -16736160 + L2 LINE L2 603 1039 -2275 440 277 26 13 chr6 172543458 172543613 -16735941 + MER5B DNA MER1_type 22 178 0 505 340 42 29 chr6 172543618 172543796 -16735758 + L2 LINE L2 1126 1311 -2003 2491 187 193 63 chr6 172543796 172544527 -16735027 + LTR1B LTR ERV1 1 826 0 505 340 42 29 chr6 172544527 172544654 -16734900 + L2 LINE L2 1311 1435 -1879 193 255 128 75 chr6 172544758 172544852 -16734702 + L2 LINE L2 3142 3240 -32 185 314 14 14 chr6 172544947 172545017 -16734537 - MIR3 SINE MIR -21 187 118 4521 63 68 5 chr6 172545235 172545807 -16733747 + LTR14B LTR ERVK 1 608 0 1950 144 0 0 chr6 172546872 172547156 -16732398 + AluSx SINE Alu 1 284 -28 201 252 46 107 chr6 172547253 172547384 -16732170 - MIR3 SINE MIR -48 160 38 235 240 0 80 chr6 172547769 172547840 -16731714 + HAL1 LINE L1 1531 1593 -914 1397 193 82 45 chr6 172547840 172548192 -16731362 + MLT1A1 LTR MaLR 1 365 0 235 240 0 80 chr6 172548192 172548220 -16731334 + HAL1 LINE L1 1593 1622 -885 836 169 7 7 chr6 172548222 172548358 -16731196 + AluJo SINE Alu 1 136 -176 517 141 0 0 chr6 172548471 172548542 -16731012 + AluJ/FLAM SINE Alu 2 72 -240 581 135 0 10 chr6 172548548 172548652 -16730902 + (GGAA)n Simple_repeat Simple_repeat 3 105 0 352 313 71 35 chr6 172548842 172549040 -16730514 + L1MDa LINE L1 2335 2539 -4001 347 292 52 54 chr6 172549045 172549189 -16730365 + L1MDa LINE L1 2545 2688 -3852 2219 74 4 0 chr6 172549189 172549459 -16730095 + L1PA8 LINE L1 5901 6171 -1 347 292 52 54 chr6 172549459 172549701 -16729853 + L1MDa LINE L1 2688 2930 -3610 571 289 155 37 chr6 172550106 172551052 -16728502 + L1MDa LINE L1 3467 4524 -2016 2266 109 0 0 chr6 172551112 172551415 -16728139 + AluSx SINE Alu 1 303 -9 1108 291 66 48 chr6 172551459 172552506 -16727048 + L1MDa LINE L1 4957 6045 -519 2507 155 338 18 chr6 172552511 172553204 -16726350 - Charlie1 DNA MER1_type 0 2761 1843 508 224 56 0 chr6 172553204 172553329 -16726225 + MLT1A1 LTR MaLR 1 132 -233 8621 44 5 7 chr6 172553329 172554877 -16724677 + L1PA4 LINE L1 4393 5930 -225 801 188 19 7 chr6 172554990 172555144 -16724410 - THE1C LTR MaLR -219 156 1 255 220 0 17 chr6 172555577 172555636 -16723918 + LTR33A LTR ERVL 447 504 -19 286 248 28 83 chr6 172556269 172556334 -16723220 + MLT1H LTR MaLR 439 497 -52 1814 153 58 15 chr6 172556334 172556661 -16722893 - MER2 DNA MER2_type -3 341 1 286 248 28 83 chr6 172556661 172556704 -16722850 + MLT1H LTR MaLR 497 541 -8 905 311 71 21 chr6 172556830 172557254 -16722300 + L2 LINE L2 2864 3308 -5 25 0 0 0 chr6 172558133 172558158 -16721396 + AT_rich Low_complexity Low_complexity 1 25 0 1155 219 47 28 chr6 172558601 172558961 -16720593 - MER69 DNA AcHobo -7 2519 2153 1178 274 102 21 chr6 172558964 172559577 -16719977 - MER69 DNA AcHobo -561 665 3 229 213 67 13 chr6 172559782 172559857 -16719697 - MER116 DNA Mariner -1 79 1 500 271 77 65 chr6 172559862 172559917 -16719637 - MIR SINE MIR -4 258 205 1936 163 125 31 chr6 172559917 172560340 -16719214 + MLT1C LTR MaLR 1 463 -4 500 271 77 65 chr6 172560340 172560531 -16719023 - MIR SINE MIR -57 205 9 2143 125 0 0 chr6 172560580 172560868 -16718686 - AluSx SINE Alu -24 288 1 389 291 20 20 chr6 172561854 172562002 -16717552 + MER103 DNA DNA 1 148 -18 28 48 0 0 chr6 172563960 172564002 -16715552 + AT_rich Low_complexity Low_complexity 1 42 0 622 174 108 108 chr6 172564322 172564535 -16715019 - MER20 DNA MER1_type -6 213 1 520 277 13 31 chr6 172566114 172566273 -16713281 + MER5A DNA MER1_type 1 156 -33 2602 65 0 0 chr6 172566276 172566585 -16712969 - AluY SINE Alu -2 309 1 21 0 0 0 chr6 172567015 172567036 -16712518 + AT_rich Low_complexity Low_complexity 1 21 0 187 241 24 12 chr6 172567045 172567128 -16712426 + GA-rich Low_complexity Low_complexity 2 85 0 232 221 205 47 chr6 172567167 172567294 -16712260 - MLT1C LTR MaLR -314 153 7 317 266 213 19 chr6 172568978 172569185 -16710369 + MIR SINE MIR 2 248 -14 2359 85 0 0 chr6 172570436 172570729 -16708825 + AluSg SINE Alu 1 293 -17 442 269 141 43 chr6 172571446 172571773 -16707781 + L1ME4a LINE L1 5606 5964 -157 201 338 86 46 chr6 172574879 172575030 -16704524 - L2 LINE L2 -189 3083 2927 343 254 42 56 chr6 172575191 172575333 -16704221 - L2 LINE L2 -832 2482 2343 627 278 188 36 chr6 172575786 172576228 -16703326 - L2 LINE L2 -1 3312 2804 238 274 196 17 chr6 172576259 172576438 -16703116 + MIR SINE MIR 44 254 -8 2176 105 11 0 chr6 172577435 172577721 -16701833 + AluSq SINE Alu 6 294 -19 1136 255 124 31 chr6 172577810 172578261 -16701293 + MLT1D LTR MaLR 13 505 0 24 96 0 0 chr6 172578590 172578663 -16700891 + AT_rich Low_complexity Low_complexity 1 73 0 237 65 0 0 chr6 172578862 172578893 -16700661 + (CA)n Simple_repeat Simple_repeat 1 31 0 197 192 0 19 chr6 172579908 172579960 -16699594 + GA-rich Low_complexity Low_complexity 6 56 0 360 293 89 21 chr6 172580047 172580238 -16699316 + L1ME4a LINE L1 5625 5828 -293 6422 141 18 3 chr6 172580240 172581754 -16697800 + L1MA4A LINE L1 4759 6298 -5 320 385 26 0 chr6 172582812 172582929 -16696625 + L2 LINE L2 3117 3236 -36 913 278 23 15 chr6 172582934 172583193 -16696361 - MIR SINE MIR 0 262 2 310 260 122 53 chr6 172583370 172583616 -16695938 - L1ME LINE L1 -303 5818 5556 2318 102 10 0 chr6 172584391 172584696 -16694858 + AluSx SINE Alu 1 308 -4 258 32 0 0 chr6 172584696 172584727 -16694827 + (CA)n Simple_repeat Simple_repeat 2 32 0 914 258 81 20 chr6 172585368 172585713 -16693841 + HAL1 LINE L1 1167 1532 -975 226 155 48 12 chr6 172585792 172585876 -16693678 + (TA)n Simple_repeat Simple_repeat 1 87 0 2069 120 0 40 chr6 172586207 172586532 -16693022 + AluSx SINE Alu 1 312 0 388 309 84 11 chr6 172587081 172587259 -16692295 - L1MEd LINE L1 -5449 670 480 209 219 47 16 chr6 172589236 172589300 -16690254 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 25 0 0 0 chr6 172589721 172589746 -16689808 + AT_rich Low_complexity Low_complexity 1 25 0 1088 39 0 0 chr6 172589746 172589873 -16689681 - L1MA2 LINE L1 0 6304 6178 292 296 40 0 chr6 172590355 172590480 -16689074 - L1ME LINE L1 -438 5683 5554 268 98 0 0 chr6 172590672 172590713 -16688841 + tRNA-Cys-TGC tRNA tRNA 1 41 -34 551 224 186 0 chr6 172591592 172591748 -16687806 + MIR SINE MIR 16 200 -62 339 212 15 144 chr6 172592089 172592194 -16687360 - L2 LINE L2 0 3313 3227 1690 152 3 34 chr6 172592194 172592491 -16687063 + AluSg SINE Alu 1 288 -22 339 212 15 144 chr6 172592491 172592517 -16687037 - L2 LINE L2 -86 3227 3199 375 239 64 37 chr6 172592883 172592992 -16686562 - L2 LINE L2 -3 3269 3158 2461 83 0 3 chr6 172595585 172595897 -16683657 + AluY SINE Alu 1 311 0 433 194 181 28 chr6 172596069 172596213 -16683341 + LTR50 LTR ERVL 1 166 -629 453 288 0 8 chr6 172596268 172596386 -16683168 + LTR50 LTR ERVL 391 507 -288 237 269 45 0 chr6 172596389 172596456 -16683098 - MER81 DNA DNA -1 113 44 314 226 197 6 chr6 172596481 172596691 -16682863 + LTR33A LTR ERVL 388 771 -24 185 226 19 0 chr6 172597085 172597138 -16682416 + CT-rich Low_complexity Low_complexity 113 166 0 785 150 35 6 chr6 172597150 172597323 -16682231 + CT-rich Low_complexity Low_complexity 1 178 0 969 277 124 14 chr6 172597360 172597707 -16681847 - LTR16C LTR ERVL 0 491 107 433 284 203 0 chr6 172599902 172600099 -16679455 + MIR SINE MIR 20 256 -6 260 297 211 14 chr6 172601196 172601405 -16678149 + L3 LINE CR1 1263 1512 -65 380 283 143 64 chr6 172601413 172601833 -16677721 - LTR33A LTR ERVL -5 518 66 210 245 38 0 chr6 172601879 172601932 -16677622 + L3 LINE CR1 1506 1560 -17 4418 114 2 0 chr6 172603612 172604209 -16675345 + L1PA13 LINE L1 5564 6161 -2 1103 97 0 0 chr6 172604802 172604947 -16674607 + L1PA5 LINE L1 5995 6139 -15 326 61 61 0 chr6 172604955 172605021 -16674533 + (TA)n Simple_repeat Simple_repeat 1 70 0 244 298 83 16 chr6 172605065 172605186 -16674368 - L2 LINE L2 -222 3050 2922 187 274 0 65 chr6 172606451 172606513 -16673041 - L2 LINE L2 -12 3260 3203 767 223 34 17 chr6 172606679 172606854 -16672700 + MER45A DNA AcHobo 1 178 0 290 219 85 0 chr6 172607908 172607990 -16671564 + MER81 DNA DNA 26 114 0 28 0 0 0 chr6 172608263 172608291 -16671263 + AT_rich Low_complexity Low_complexity 1 28 0 375 196 62 54 chr6 172609750 172609848 -16669706 + MER117 DNA MER1_type 1 99 -98 848 199 82 0 chr6 172609848 172610019 -16669535 - MER58A DNA MER1_type 0 224 40 899 201 102 77 chr6 172610183 172610506 -16669048 + MER46C DNA MER2_type 4 334 -4 257 269 97 11 chr6 172611224 172611317 -16668237 - MIR3 SINE MIR -3 205 105 368 312 43 14 chr6 172611327 172611465 -16668089 - MIR SINE MIR -29 233 92 196 298 21 0 chr6 172611632 172611679 -16667875 - L2 LINE L2 -89 3183 3136 739 317 16 4 chr6 172611685 172611934 -16667620 + L2 LINE L2 2604 2855 -459 272 83 62 62 chr6 172611970 172612018 -16667536 + L2 LINE L2 3224 3271 -1 252 271 40 45 chr6 172612237 172612414 -16667140 + L1ME4a LINE L1 5729 5904 -217 843 229 84 86 chr6 172612459 172612578 -16666976 - Charlie4 DNA MER1_type 0 1961 1843 1319 218 77 42 chr6 172612578 172612931 -16666623 + MLT1A1 LTR MaLR 1 365 0 843 229 84 86 chr6 172612931 172613313 -16666241 - Charlie4 DNA MER1_type -118 1843 1461 333 192 26 0 chr6 172613353 172613431 -16666123 - L1ME2 LINE L1 0 6233 6154 1184 265 62 17 chr6 172613444 172613863 -16665691 - L1ME2 LINE L1 -170 6063 5626 1506 219 36 39 chr6 172613870 172614404 -16665150 - L1ME2 LINE L1 -2875 3340 2809 1160 193 73 13 chr6 172614519 172614752 -16664802 - MLT1D LTR MaLR 0 505 259 3113 151 90 12 chr6 172614766 172615276 -16664278 - MER44D DNA MER2_type 0 605 1 1256 313 87 42 chr6 172615315 172615570 -16663984 - L1ME2 LINE L1 -4948 1448 1206 2428 77 3 3 chr6 172615570 172615869 -16663685 - AluSp SINE Alu -12 301 3 1256 313 87 42 chr6 172615869 172616989 -16662565 - L1ME2 LINE L1 -5190 1206 12 1849 180 151 22 chr6 172617032 172617448 -16662106 + MLT2B2 LTR ERVL 6 475 -40 239 214 29 0 chr6 172617460 172617530 -16662024 + (TA)n Simple_repeat Simple_repeat 1 72 0 344 102 0 0 chr6 172617542 172617591 -16661963 + MLT2B2 LTR ERVL 472 520 0 558 248 45 0 chr6 172617709 172617866 -16661688 - Charlie4 DNA MER1_type -1681 280 117 414 173 8 123 chr6 172617867 172617889 -16661665 - L1ME LINE L1 -5122 948 925 2531 77 3 0 chr6 172617889 172618200 -16661354 - AluSp SINE Alu -1 312 1 414 173 8 123 chr6 172618200 172618343 -16661211 - L1ME LINE L1 -5145 925 810 430 188 129 0 chr6 172618345 172618446 -16661108 - Charlie4 DNA MER1_type -1804 157 44 427 194 56 0 chr6 172618459 172618567 -16660987 + L1ME4a LINE L1 5991 6104 -17 1756 122 11 0 chr6 172619993 172620256 -16659298 - L1MA1 LINE L1 0 6302 6037 332 154 19 0 chr6 172621635 172621690 -16657864 - AluJo/F(R)AM SINE Alu -88 214 168 642 101 0 0 chr6 172621690 172621800 -16657754 + AluJo/FRAM SINE Alu 204 313 0 24 0 0 0 chr6 172623329 172623353 -16656201 + AT_rich Low_complexity Low_complexity 1 24 0 196 364 71 10 chr6 172623482 172623581 -16655973 + MIR SINE MIR 42 146 -62 2302 124 164 13 chr6 172624805 172625177 -16654377 - MSTA LTR MaLR 0 428 1 564 227 67 0 chr6 172625501 172625620 -16653934 - MER58B DNA MER1_type -16 325 199 1111 274 50 44 chr6 172625804 172626260 -16653294 + LTR16C LTR ERVL 33 491 0 2494 114 13 39 chr6 172626681 172627066 -16652488 - THE1C LTR MaLR 0 375 1 195 225 25 0 chr6 172627296 172627336 -16652218 + L2 LINE L2 3018 3058 -214 244 205 26 103 chr6 172627786 172627903 -16651651 - L1MC5 LINE L1 -48 7913 7806 323 286 71 8 chr6 172629579 172629705 -16649849 - MIR SINE MIR -58 204 71 420 290 244 0 chr6 172629710 172629886 -16649668 - MIR SINE MIR -1 261 43 2138 105 3 16 chr6 172633154 172633468 -16646086 + AluSp SINE Alu 1 310 -3 324 289 143 34 chr6 172634689 172634990 -16644564 - L2 LINE L2 -245 3068 2729 510 114 0 0 chr6 172635015 172635094 -16644460 + (GA)n Simple_repeat Simple_repeat 1 79 0 189 0 0 0 chr6 172637754 172637775 -16641779 + (A)n Simple_repeat Simple_repeat 1 21 0 187 360 20 30 chr6 172638879 172638979 -16640575 + MER5B DNA MER1_type 1 99 -79 187 363 70 32 chr6 172639299 172639456 -16640098 + MIR3 SINE MIR 23 185 -23 795 268 87 0 chr6 172639826 172640057 -16639497 + MIR SINE MIR 2 252 -10 607 237 206 12 chr6 172640067 172640324 -16639230 - L1ME LINE L1 -311 5810 5504 272 195 23 0 chr6 172640435 172640510 -16639044 - L1ME LINE L1 -824 5346 5267 253 372 124 9 chr6 172640584 172640802 -16638752 - L2 LINE L2 -73 3199 2957 2213 127 7 0 chr6 172640862 172641170 -16638384 + AluSg SINE Alu 1 310 0 3961 172 12 18 chr6 172641366 172642110 -16637444 - L1MA7 LINE L1 -1 6290 5551 783 321 24 0 chr6 172642683 172642929 -16636625 + MIR SINE MIR 4 255 -7 2714 155 29 5 chr6 172643018 172643432 -16636122 - MSTB LTR MaLR -2 424 1 279 288 94 44 chr6 172643664 172643824 -16635730 - MLT1K LTR MaLR -20 568 401 356 203 0 0 chr6 172644086 172644145 -16635409 - MER2 DNA MER2_type -18 327 269 2539 148 49 7 chr6 172644648 172645059 -16634495 - MSTA LTR MaLR 0 428 1 350 236 136 14 chr6 172645307 172645447 -16634107 + MER103 DNA DNA 1 157 -9 1016 102 25 6 chr6 172646231 172646418 -16633136 + L1PA2 LINE L1 5994 6155 0 600 164 10 144 chr6 172646514 172646609 -16632945 - LOR1-int LTR ERV1 -2889 3709 3653 1362 170 53 57 chr6 172646609 172646738 -16632816 + AluJo SINE Alu 1 129 -183 2357 90 0 0 chr6 172646738 172647028 -16632526 - AluY SINE Alu -20 291 2 1362 170 53 57 chr6 172647028 172647181 -16632373 + AluJo SINE Alu 129 282 -30 600 164 10 144 chr6 172647181 172647286 -16632268 - LOR1-int LTR ERV1 -2945 3653 3536 1460 165 86 99 chr6 172647552 172647570 -16631984 - LOR1-int LTR ERV1 -4323 2435 2418 2151 116 7 7 chr6 172647570 172647864 -16631690 + AluSx SINE Alu 1 294 -18 1460 165 86 99 chr6 172647864 172648584 -16630970 - LOR1-int LTR ERV1 -4340 2418 1541 2960 26 0 9 chr6 172648596 172648616 -16630938 + L1P2 LINE L1 5417 5436 -719 1495 51 0 0 chr6 172648616 172648792 -16630762 - L1PA4 LINE L1 -6 6149 5974 2960 26 0 9 chr6 172648792 172649116 -16630438 + L1P2 LINE L1 5436 5758 -397 2624 128 20 61 chr6 172649193 172649702 -16629852 - LOR1-int LTR ERV1 -6580 1540 1053 784 174 160 6 chr6 172649702 172649883 -16629671 - L1MC4 LINE L1 -1 8041 7752 403 241 105 25 chr6 172649886 172650048 -16629506 - MER34 LTR ERV1 0 542 368 1438 200 91 0 chr6 172650067 172650342 -16629212 - AluJo SINE Alu -12 300 1 234 309 0 0 chr6 172650561 172650629 -16628925 - LTR48B LTR ERV1 -425 219 152 221 308 0 0 chr6 172650886 172650938 -16628616 - L2 LINE L2 -10 3303 3252 2181 142 28 69 chr6 172650993 172651373 -16628181 - MER65-int LTR ERV1 -2871 2000 1641 2009 111 38 0 chr6 172651373 172651662 -16627892 - AluSx SINE Alu -6 306 7 2181 142 28 69 chr6 172651662 172651747 -16627807 - MER65-int LTR ERV1 -3230 1641 1554 2312 188 82 37 chr6 172651768 172652365 -16627189 - MER65-int LTR ERV1 -3529 1342 719 2285 117 20 9 chr6 172652411 172652753 -16626801 + THE1C LTR MaLR 29 374 -1 10777 102 34 5 chr6 172652758 172654278 -16625276 + THE1C-int LTR MaLR 17 1580 0 2077 104 39 7 chr6 172654279 172654587 -16624967 + THE1C LTR MaLR 1 318 -57 612 280 28 20 chr6 172654587 172654837 -16624717 + L1ME3A LINE L1 5686 5937 -233 23 0 0 0 chr6 172654865 172654888 -16624666 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 172655210 172655238 -16624316 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 172655977 172655998 -16623556 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr6 172657045 172657084 -16622470 + (TG)n Simple_repeat Simple_repeat 2 40 0 595 247 232 0 chr6 172657858 172658052 -16621502 + MIR SINE MIR 12 250 -12 260 59 0 0 chr6 172658497 172658531 -16621023 + L2 LINE L2 3271 3304 -9 2368 46 0 4 chr6 172659244 172659555 -16619999 - AluY SINE Alu 0 310 1 1296 156 33 0 chr6 172659796 172660007 -16619547 - L1PB4 LINE L1 -1 6155 5938 298 273 148 60 chr6 172660670 172660794 -16618760 + MIR SINE MIR 57 203 -59 414 139 25 25 chr6 172660794 172660873 -16618681 + MER116 DNA Mariner 1 79 -1 298 273 148 60 chr6 172660873 172660931 -16618623 + MIR SINE MIR 203 255 -7 2384 81 3 0 chr6 172661066 172661364 -16618190 + AluY SINE Alu 1 299 -12 200 333 36 24 chr6 172662424 172662508 -16617046 - MER5A DNA MER1_type -50 139 55 195 311 71 71 chr6 172662799 172662956 -16616598 - L3b LINE CR1 -241 1342 1183 2538 129 25 6 chr6 172662956 172663312 -16616242 + THE1B LTR MaLR 1 363 -1 195 311 71 71 chr6 172663312 172663392 -16616162 - L3b LINE CR1 -399 1184 1105 456 227 132 0 chr6 172663407 172663611 -16615943 - MER91B DNA MER1_type 0 190 1 448 295 158 6 chr6 172665661 172665844 -16613710 + MIR SINE MIR 17 227 -35 2086 129 0 0 chr6 172666237 172666515 -16613039 + AluSx SINE Alu 1 278 -34 919 95 13 6 chr6 172666518 172666676 -16612878 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 436 314 8 0 chr6 172667451 172667569 -16611985 - MIR3 SINE MIR -6 202 84 231 36 0 0 chr6 172668765 172668793 -16610761 + (TA)n Simple_repeat Simple_repeat 1 28 0 215 323 126 0 chr6 172669079 172669206 -16610348 + MIR3 SINE MIR 17 159 -49 183 129 0 0 chr6 172669359 172669390 -16610164 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 1634 166 4 15 chr6 172669391 172669662 -16609892 - AluJo SINE Alu -44 268 1 223 234 21 0 chr6 172669703 172669750 -16609804 + L3 LINE CR1 1523 1570 -7 416 241 45 9 chr6 172669811 172669923 -16609631 - MIR3 SINE MIR -41 167 52 884 111 0 16 chr6 172672028 172672154 -16607400 - FLAM_C SINE Alu -18 125 2 180 125 0 0 chr6 172672437 172672469 -16607085 + (CACCAT)n Simple_repeat Simple_repeat 4 35 0 622 195 30 8 chr6 172672747 172672883 -16606671 + MLT1A2 LTR MaLR 260 369 -5 324 266 111 32 chr6 172673919 172674103 -16605451 - MIR SINE MIR -42 220 33 * 1222 323 148 26 chr6 172674093 172675030 -16604524 - L3 LINE CR1 -11 1566 515 263 351 15 15 chr6 172675382 172675516 -16604038 - L3 LINE CR1 -1074 503 370 237 300 18 27 chr6 172675959 172676001 -16603553 + LTR67 LTR ERVL 449 490 -67 300 183 33 0 chr6 172676001 172676061 -16603493 + MLT1K LTR MaLR 519 580 -8 2175 107 7 0 chr6 172676737 172677027 -16602527 + AluSp SINE Alu 1 292 -21 612 245 123 0 chr6 172677351 172677506 -16602048 - MER45A DNA AcHobo -2 176 3 2237 113 0 10 chr6 172680796 172681106 -16598448 + AluSq SINE Alu 1 307 -6 216 0 0 0 chr6 172682046 172682070 -16597484 + (A)n Simple_repeat Simple_repeat 1 24 0 2121 115 3 10 chr6 172682070 172682407 -16597147 + AluY SINE Alu 1 311 0 238 310 45 57 chr6 172682439 172682684 -16596870 + HAL1b LINE L1 108 349 -999 1553 250 68 63 chr6 172683492 172683747 -16595807 + L1MC5 LINE L1 6488 6740 -1221 2228 109 13 7 chr6 172683747 172684050 -16595504 - AluSq SINE Alu -8 305 1 1553 250 68 63 chr6 172684050 172684227 -16595327 + L1MC5 LINE L1 6740 6915 -1046 1147 44 7 0 chr6 172684227 172684362 -16595192 - L1PA3 LINE L1 0 6155 6020 1553 250 68 63 chr6 172684362 172684820 -16594734 + L1MC5 LINE L1 6915 7375 -586 2104 92 16 20 chr6 172684902 172685047 -16594507 - L1PA13 LINE L1 0 6163 6019 1944 125 91 28 chr6 172685047 172685229 -16594325 + THE1C LTR MaLR 1 170 -205 315 65 0 0 chr6 172685229 172685275 -16594279 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 1944 125 91 28 chr6 172685275 172685445 -16594109 + THE1C LTR MaLR 170 375 0 2104 92 16 20 chr6 172685445 172685603 -16593951 - L1PA13 LINE L1 -144 6019 5861 238 229 133 0 chr6 172685608 172685691 -16593863 + L1MC5 LINE L1 7399 7492 -469 426 321 9 51 chr6 172685786 172686001 -16593553 + L1ME3A LINE L1 5964 6169 -1 204 125 0 0 chr6 172686096 172686128 -16593426 + (CA)n Simple_repeat Simple_repeat 1 32 0 204 229 21 0 chr6 172686138 172686186 -16593368 + MIR SINE MIR 103 151 -111 307 51 0 0 chr6 172687023 172687062 -16592492 + MADE1 DNA Mariner 42 80 0 21 0 0 0 chr6 172687244 172687265 -16592289 + AT_rich Low_complexity Low_complexity 1 21 0 828 274 25 8 chr6 172687267 172687504 -16592050 - MIR SINE MIR 0 262 22 243 300 56 0 chr6 172687766 172687856 -16591698 + MIR SINE MIR 21 115 -147 1134 229 10 10 chr6 172687909 172688223 -16591331 + L1MA10 LINE L1 6008 6321 -13 1741 80 32 8 chr6 172688791 172689042 -16590512 - L1PA10 LINE L1 0 6168 5912 257 281 0 0 chr6 172691477 172691534 -16588020 + L2 LINE L2 3244 3300 -13 274 309 29 14 chr6 172691797 172691936 -16587618 + L1ME4a LINE L1 3792 3932 -2214 2033 107 24 7 chr6 172692324 172692613 -16586941 + AluSx SINE Alu 1 294 -18 348 154 0 0 chr6 172692719 172692771 -16586783 + Alu SINE Alu 236 287 -15 753 316 80 53 chr6 172692800 172693436 -16586118 + L1ME4a LINE L1 4407 5059 -1087 215 182 0 23 chr6 172693439 172693483 -16586071 + A-rich Low_complexity Low_complexity 4 46 0 394 238 80 119 chr6 172693690 172694228 -16585326 + L1ME4a LINE L1 5328 5844 -277 444 276 40 13 chr6 172694254 172694406 -16585148 + L1ME4a LINE L1 5944 6099 -22 592 263 42 96 chr6 172694424 172694664 -16584890 - MIR SINE MIR -2 260 34 1892 166 85 49 chr6 172694737 172695206 -16584348 - Charlie1b DNA MER1_type -37 486 1 186 43 0 0 chr6 172695601 172695624 -16583930 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 312 277 0 0 chr6 172695744 172695809 -16583745 - L2 LINE L2 -87 3185 3121 895 217 24 19 chr6 172696207 172696414 -16583140 - MLT1A2 LTR MaLR 0 374 167 198 0 0 0 chr6 172696422 172696444 -16583110 + (TC)n Simple_repeat Simple_repeat 2 23 0 1277 152 23 61 chr6 172696452 172696716 -16582838 - AluJb SINE Alu -54 258 5 442 146 12 12 chr6 172696717 172696799 -16582755 - MLT1A2 LTR MaLR -206 159 78 1633 172 24 10 chr6 172697865 172698156 -16581398 + AluJo SINE Alu 1 295 -17 1253 164 168 3 chr6 172699259 172699569 -16579985 + L1MC2 LINE L1 5935 6295 -49 2356 128 118 3 chr6 172699569 172699952 -16579602 - MSTA LTR MaLR 0 428 2 1341 170 28 16 chr6 172701346 172701599 -16577955 - MER63C DNA MER1_type 0 930 675 2431 240 50 60 chr6 172701627 172702427 -16577127 + MER21B LTR ERV1 12 803 -60 687 245 24 34 chr6 172702479 172702687 -16576867 - MER63C DNA MER1_type -470 460 255 1258 102 0 0 chr6 172703051 172703227 -16576327 - L1PA6 LINE L1 -2 6152 5977 1905 154 3 0 chr6 172704235 172704546 -16575008 + AluSx SINE Alu 1 312 0 210 298 48 36 chr6 172705135 172705219 -16574335 + L2 LINE L2 1861 1945 -1369 1267 148 238 63 chr6 172706074 172706440 -16573114 + MSTB1 LTR MaLR 3 432 0 2125 102 3 0 chr6 172706539 172706833 -16572721 - AluSx SINE Alu -17 295 1 1926 148 9 3 chr6 172706842 172707167 -16572387 - L1MB3 LINE L1 -2 6181 5855 379 328 55 40 chr6 172707420 172707621 -16571933 - MIR SINE MIR -40 222 19 2140 88 6 41 chr6 172709923 172710243 -16569311 + AluSg SINE Alu 1 309 -1 480 288 61 12 chr6 172713853 172714012 -16565542 + MLT1E3 LTR MaLR 52 218 -375 382 148 34 111 chr6 172714012 172714113 -16565441 + MLT1E2 LTR MaLR 1 96 -409 719 183 8 0 chr6 172714113 172714244 -16565310 + FLAM_C SINE Alu 2 133 -10 2213 219 68 8 chr6 172714244 172714756 -16564798 + MLT1E2 LTR MaLR 84 626 0 647 263 135 4 chr6 172714764 172715030 -16564524 + MLT1E3 LTR MaLR 284 584 -40 242 158 18 53 chr6 172715487 172715544 -16564010 + L3 LINE CR1 1521 1575 -2 280 272 155 36 chr6 172717332 172717360 -16562194 - MIR SINE MIR -15 247 224 523 250 18 0 chr6 172717360 172717472 -16562082 + MER81 DNA DNA 1 114 0 280 272 155 36 chr6 172717472 172717663 -16561891 - MIR SINE MIR -38 224 10 249 326 116 0 chr6 172718224 172718319 -16561235 + MIR SINE MIR 58 163 -99 1653 211 97 23 chr6 172719048 172719483 -16560071 + MLT1C LTR MaLR 1 467 0 242 313 112 14 chr6 172719619 172719897 -16559657 + L2 LINE L2 2563 2867 -447 495 279 74 61 chr6 172719960 172720272 -16559282 + L2 LINE L2 2991 3306 -7 255 200 27 80 chr6 172720567 172720642 -16558912 - MIR SINE MIR -81 181 111 2271 109 0 0 chr6 172720971 172721275 -16558279 + AluSq SINE Alu 1 304 -9 185 250 94 16 chr6 172721481 172721545 -16558009 + MER5C DNA MER1_type 115 183 -141 1126 187 18 0 chr6 172721639 172721758 -16557796 + AluJb SINE Alu 1 127 -185 724 56 37 0 chr6 172721758 172721866 -16557688 + (GAAA)n Simple_repeat Simple_repeat 2 113 0 1126 187 18 0 chr6 172721866 172721965 -16557589 + AluJb SINE Alu 127 223 -89 209 303 68 45 chr6 172722127 172722259 -16557295 + L2 LINE L2 2543 2677 -637 1758 238 97 41 chr6 172722269 172722509 -16557045 + MER119 DNA MER1_type 3 228 -355 3131 143 17 8 chr6 172722509 172723042 -16556512 + L1MB4 LINE L1 5643 6180 0 1758 238 97 41 chr6 172723042 172723335 -16556219 + MER119 DNA MER1_type 228 566 -17 1376 208 140 44 chr6 172723335 172723879 -16555675 + L1MC5 LINE L1 7272 7867 -94 202 265 0 0 chr6 172724226 172724275 -16555279 + L2 LINE L2 3265 3313 0 374 250 25 58 chr6 172725603 172725723 -16553831 + MER5B DNA MER1_type 63 178 0 750 160 20 120 chr6 172725731 172725795 -16553759 - MER5A DNA MER1_type 0 189 120 2337 91 0 0 chr6 172725795 172726102 -16553452 + AluSx SINE Alu 1 307 -5 2217 106 0 0 chr6 172726111 172726412 -16553142 + AluSx SINE Alu 1 301 -11 750 160 20 120 chr6 172726412 172726537 -16553017 - MER5A DNA MER1_type -77 112 10 212 304 98 10 chr6 172726581 172726683 -16552871 + MIR SINE MIR 125 235 -27 1709 194 26 8 chr6 172727885 172728262 -16551292 - L1MB4 LINE L1 -1 6179 5796 214 314 91 25 chr6 172728325 172728446 -16551108 - MIR SINE MIR -62 146 18 225 306 35 35 chr6 172729044 172729129 -16550425 - MIR SINE MIR -150 112 28 2081 126 0 0 chr6 172730240 172730534 -16549020 + AluSg SINE Alu 1 294 -16 1668 168 0 23 chr6 172730588 172730891 -16548663 + AluJb SINE Alu 5 300 -12 620 238 119 58 chr6 172730967 172731378 -16548176 + L2 LINE L2 2283 2718 -596 638 283 24 19 chr6 172731716 172731928 -16547626 + MLT1I LTR MaLR 197 409 0 416 241 30 90 chr6 172732255 172732421 -16547133 + L2 LINE L2 3158 3313 0 793 220 21 5 chr6 172732649 172732835 -16546719 - MER5A DNA MER1_type 0 189 1 542 318 36 52 chr6 172734115 172734139 -16545415 + MIR SINE MIR 13 36 -226 1969 126 10 0 chr6 172734139 172734432 -16545122 + AluSx SINE Alu 1 296 -16 542 318 36 52 chr6 172734432 172734659 -16544895 + MIR SINE MIR 36 260 -2 664 197 127 0 chr6 172735626 172735768 -16543786 + MER63 DNA MER1_type 4 789 -47 200 186 0 85 chr6 172736257 172736316 -16543238 + MIR SINE MIR 116 169 -93 5146 122 4 32 chr6 172736333 172737123 -16542431 - L1MA4A LINE L1 0 6303 5536 648 242 0 8 chr6 172737852 172737980 -16541574 + FLAM_A SINE Alu 1 127 -6 253 313 74 21 chr6 172738094 172738433 -16541121 + L1M4c LINE L1 2120 2476 -5091 569 362 18 9 chr6 172738443 172738661 -16540893 + MLT2F LTR ERVL 4 223 -440 2460 241 102 6 chr6 172738689 172739357 -16540197 + L1M4c LINE L1 11 742 -6823 5279 148 20 6 chr6 172739409 172740189 -16539365 + L1MC1 LINE L1 5486 6280 -53 1841 154 0 27 chr6 172740189 172740487 -16539067 - AluJb SINE Alu -22 290 1 5279 148 20 6 chr6 172740487 172740540 -16539014 + L1MC1 LINE L1 6280 6331 -2 361 307 21 73 chr6 172740540 172740732 -16538822 + L1M4c LINE L1 2809 2990 -4756 415 298 98 44 chr6 172740741 172741016 -16538538 + L1MCc LINE L1 34 323 -6100 2185 129 0 0 chr6 172741052 172741355 -16538199 + AluSx SINE Alu 1 303 -9 1805 237 39 66 chr6 172741717 172742586 -16536968 + L1MCc LINE L1 852 1702 -4889 183 156 0 0 chr6 172742588 172742620 -16536934 + (CA)n Simple_repeat Simple_repeat 2 33 0 452 266 11 23 chr6 172742629 172742806 -16536748 + L1MCc LINE L1 1952 2126 -4815 * 3475 226 70 11 chr6 172742797 172743837 -16535717 + L1MCc LINE L1 2905 3967 -2974 485 250 25 55 chr6 172743833 172743976 -16535578 + L1M4c LINE L1 2977 3114 -4632 * 1609 227 81 31 chr6 172743976 172744456 -16535098 - MLT1D LTR MaLR -1 504 1 485 250 25 55 chr6 172744456 172744512 -16535042 + L1M4c LINE L1 3114 3170 -4576 1646 160 8 8 chr6 172744782 172745050 -16534504 - AluJo SINE Alu -44 268 1 255 210 10 50 chr6 172745063 172745163 -16534391 + L1M4c LINE L1 3486 3581 -4165 194 314 48 38 chr6 172745180 172745285 -16534269 - MIR SINE MIR -131 131 26 272 348 124 15 chr6 172746392 172746593 -16532961 - L2 LINE L2 -8 3264 3042 7105 100 31 3 chr6 172746668 172747805 -16531749 + L1MA3 LINE L1 5136 6303 -2 1429 213 57 3 chr6 172747864 172748197 -16531357 + L1ME1 LINE L1 5511 5861 -305 910 232 52 36 chr6 172748516 172748812 -16530742 - MER51A LTR ERV1 0 640 341 305 224 0 0 chr6 172748895 172748953 -16530601 - MER51C LTR ERV1 -260 380 323 320 221 0 0 chr6 172748992 172749060 -16530494 - MER51A LTR ERV1 -566 68 1 183 80 0 0 chr6 172749790 172749815 -16529739 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 367 302 24 16 chr6 172750067 172750193 -16529361 - MER5A DNA MER1_type 0 189 63 * 376 333 7 28 chr6 172750089 172750233 -16529321 + MER5A DNA MER1_type 34 174 -15 916 208 6 18 chr6 172750644 172750812 -16528742 + FRAM SINE Alu 1 166 0 270 176 0 0 chr6 172750829 172750880 -16528674 + GA-rich Low_complexity Low_complexity 4 54 0 279 250 142 25 chr6 172751096 172751216 -16528338 - MER117 DNA MER1_type -31 166 33 187 225 25 0 chr6 172751241 172751281 -16528273 - L2 LINE L2 -8 3305 3265 283 304 35 26 chr6 172751417 172751532 -16528022 + L1ME LINE L1 5746 5861 -309 2813 10 0 0 chr6 172751532 172751836 -16527718 + AluYa5 SINE Alu 1 304 -7 293 306 81 32 chr6 172753065 172753239 -16526315 - MIR SINE MIR -56 206 29 789 295 65 27 chr6 172753445 172753814 -16525740 - HAL1 LINE L1 -2119 388 6 5327 148 72 3 chr6 172754860 172755773 -16523781 + L1MC1 LINE L1 5358 6333 0 353 202 18 18 chr6 172755851 172755965 -16523589 + G-rich Low_complexity Low_complexity 3 116 0 477 101 0 14 chr6 172756126 172756195 -16523359 + Tigger2 DNA MER2_type 2 69 -2649 * 2625 128 61 5 chr6 172756179 172756607 -16522947 + Tigger2 DNA MER2_type 2267 2718 0 1483 228 102 61 chr6 172756607 172757177 -16522377 - MLT1E LTR MaLR 0 593 1 1503 168 46 0 chr6 172757187 172757492 -16522062 - AluJb SINE Alu 0 326 10 2324 112 32 35 chr6 172757492 172757866 -16521688 - THE1C LTR MaLR -2 373 1 2130 130 3 0 chr6 172758069 172758361 -16521193 + AluSg SINE Alu 1 293 -17 287 298 19 63 chr6 172759355 172759513 -16520041 - MER5A DNA MER1_type -11 178 28 326 120 0 20 chr6 172759697 172759747 -16519807 + L2 LINE L2 3184 3232 -81 1209 152 10 25 chr6 172760524 172760728 -16518826 + Tigger5 DNA MER2_type 2123 2323 0 213 39 0 0 chr6 172761228 172761254 -16518300 + (GGA)n Simple_repeat Simple_repeat 3 28 0 219 248 0 0 chr6 172762555 172762660 -16516894 + CT-rich Low_complexity Low_complexity 2 106 0 494 201 0 6 chr6 172762744 172762908 -16516646 + CT-rich Low_complexity Low_complexity 1 163 0 246 128 0 0 chr6 172762961 172763000 -16516554 + (GGGAGA)n Simple_repeat Simple_repeat 4 42 0 318 324 104 43 chr6 172763700 172763978 -16515576 - MLT1J LTR MaLR -200 311 17 203 244 0 0 chr6 172764018 172764063 -16515491 - L2 LINE L2 -1 3312 3268 711 278 123 32 chr6 172764402 172764899 -16514655 + MLT2F LTR ERVL 40 581 -82 680 94 9 0 chr6 172765273 172765379 -16514175 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 1539 162 63 4 chr6 172765397 172765650 -16513904 + AluJb SINE Alu 1 268 -44 44 20 0 0 chr6 172765663 172765714 -16513840 + AT_rich Low_complexity Low_complexity 1 51 0 33 25 0 0 chr6 172766080 172766120 -16513434 + AT_rich Low_complexity Low_complexity 1 40 0 380 221 82 51 chr6 172766275 172766433 -16513121 + MER103 DNA DNA 3 165 -1 2556 121 25 0 chr6 172766463 172766818 -16512736 + THE1B LTR MaLR 1 364 0 216 123 35 35 chr6 172766911 172766968 -16512586 + (TA)n Simple_repeat Simple_repeat 2 58 0 219 164 55 27 chr6 172767068 172767141 -16512413 + (TA)n Simple_repeat Simple_repeat 1 75 0 44199 45 2 0 chr6 172767518 172773652 -16505902 + L1PA4 LINE L1 7 6152 -3 1851 283 96 54 chr6 172773739 172773757 -16505797 + L1MEd LINE L1 67 83 -6227 1325 204 68 53 chr6 172773757 172774096 -16505458 - MER2 DNA MER2_type 0 344 1 1851 283 96 54 chr6 172774096 172775645 -16503909 + L1MEd LINE L1 83 1731 -4579 2181 105 62 49 chr6 172775739 172776109 -16503445 - THE1C LTR MaLR 0 375 1 10162 127 16 45 chr6 172776109 172777732 -16501822 - THE1C-int LTR MaLR 0 1580 5 1793 137 99 38 chr6 172777736 172778079 -16501475 - THE1B LTR MaLR 0 364 1 308 313 54 57 chr6 172778421 172778518 -16501036 + L1MEd LINE L1 2186 2282 -3847 2173 131 0 0 chr6 172778518 172778830 -16500724 + AluSx SINE Alu 1 312 0 308 313 54 57 chr6 172778830 172779138 -16500416 + L1MEd LINE L1 2282 2590 -3539 2008 135 24 3 chr6 172779140 172779437 -16500117 + AluSx SINE Alu 1 303 -9 428 103 51 8 chr6 172779502 172779619 -16499935 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 411 145 0 0 chr6 172779804 172779873 -16499681 + Alu SINE Alu 236 304 -8 283 320 130 0 chr6 172780702 172780802 -16498752 - L2 LINE L2 -4 3268 3156 317 296 56 9 chr6 172782271 172782379 -16497175 + MIR SINE MIR 63 175 -87 1358 214 32 56 chr6 172782385 172782716 -16496838 + L1MC4 LINE L1 7155 7475 -567 2497 128 28 14 chr6 172782716 172783075 -16496479 - THE1B LTR MaLR 0 364 1 1358 214 32 56 chr6 172783075 172783174 -16496380 + L1MC4 LINE L1 7475 7575 -467 1647 209 80 27 chr6 172783201 172783641 -16495913 + MLT1D LTR MaLR 43 505 0 1757 171 58 88 chr6 172783641 172783668 -16495886 + L1MC4 LINE L1 7572 7598 -444 2011 157 3 0 chr6 172783668 172783973 -16495581 + AluSx SINE Alu 1 306 -6 1757 171 58 88 chr6 172783973 172784431 -16495123 + L1MC4 LINE L1 7598 8042 0 697 262 74 10 chr6 172784568 172784770 -16494784 + MIR SINE MIR 13 227 -35 600 119 0 175 chr6 172784789 172784915 -16494639 + AluJo SINE Alu 57 160 -152 214 324 67 29 chr6 172785157 172785262 -16494292 - L2 LINE L2 -23 3290 3182 21 36 0 0 chr6 172787224 172787252 -16492302 + AT_rich Low_complexity Low_complexity 1 28 0 2808 226 64 36 chr6 172787320 172788246 -16491308 - L1ME2 LINE L1 -9 6549 5601 805 235 12 6 chr6 172788249 172788419 -16491135 - AluJo SINE Alu -22 290 120 714 216 43 19 chr6 172788419 172788627 -16490927 - L1ME2 LINE L1 -958 5582 5370 354 284 111 52 chr6 172788668 172788723 -16490831 - L1ME2 LINE L1 -4631 1909 1859 2230 128 0 0 chr6 172788723 172789021 -16490533 - AluSx SINE Alu -14 298 1 354 284 111 52 chr6 172789021 172789312 -16490242 - L1ME2 LINE L1 -4681 1859 1548 238 169 62 31 chr6 172789719 172789784 -16489770 + MLT1L LTR MaLR 18 84 -531 484 285 29 24 chr6 172789944 172790151 -16489403 + MLT1J LTR MaLR 259 466 -45 434 225 108 6 chr6 172790798 172791187 -16488367 - L1ME4a LINE L1 -49 6072 5570 305 223 117 10 chr6 172791236 172791339 -16488215 - L1ME4a LINE L1 -652 5469 5356 6932 138 45 14 chr6 172791666 172792846 -16486708 + Tigger3b DNA MER2_type 15 1231 0 1880 145 13 3 chr6 172793011 172793314 -16486240 + AluSx SINE Alu 1 306 -6 195 302 162 28 chr6 172793631 172793810 -16485744 + MIR SINE MIR 51 253 -9 436 192 35 23 chr6 172795295 172795467 -16484087 + (TA)n Simple_repeat Simple_repeat 2 175 0 806 103 0 17 chr6 172799080 172799197 -16480357 - AluY SINE Alu 0 311 197 2003 118 0 0 chr6 172799262 172799548 -16480006 + AluSx SINE Alu 21 306 0 1291 201 34 22 chr6 172799796 172800064 -16479490 + L1MDa LINE L1 29 299 -6241 357 24 0 0 chr6 172800617 172800659 -16478895 + (CA)n Simple_repeat Simple_repeat 2 43 0 439 298 91 33 chr6 172800662 172800937 -16478617 + L1MDa LINE L1 470 760 -5770 3152 145 2 23 chr6 172801138 172801661 -16477893 + L1MB2 LINE L1 5619 6130 -41 842 213 0 7 chr6 172801666 172801821 -16477733 + FRAM SINE Alu 5 158 -8 696 304 72 37 chr6 172802443 172802818 -16476736 - L2 LINE L2 -5 3308 2921 667 234 38 0 chr6 172803174 172803332 -16476222 - MER58A DNA MER1_type -18 206 43 1981 125 7 4 chr6 172803382 172803696 -16475858 + AluSx SINE Alu 1 315 0 843 232 175 67 chr6 172803696 172804175 -16475379 + Charlie7 DNA MER1_type 46 576 -2036 2285 197 54 48 chr6 172804185 172804595 -16474959 - MLT1F LTR MaLR 0 542 127 2075 149 0 0 chr6 172804595 172804896 -16474658 + AluSx SINE Alu 1 301 -11 2285 197 54 48 chr6 172804896 172805024 -16474530 - MLT1F LTR MaLR -415 127 1 464 255 78 0 chr6 172805024 172805165 -16474389 - MLT1F-int LTR MaLR 0 1371 1220 444 37 0 0 chr6 172805286 172805340 -16474214 + (TG)n Simple_repeat Simple_repeat 1 54 0 1809 203 88 25 chr6 172805343 172805787 -16473767 - MLT2B2 LTR ERVL -42 473 2 216 310 0 23 chr6 172806534 172806621 -16472933 + GA-rich Low_complexity Low_complexity 4 88 0 503 253 7 7 chr6 172807079 172807225 -16472329 - MIR SINE MIR 0 262 117 342 268 116 0 chr6 172809097 172809235 -16470319 - MIR SINE MIR -16 246 93 784 121 8 23 chr6 172809781 172809913 -16469641 + FLAM_A SINE Alu 13 142 0 195 297 0 16 chr6 172810870 172810934 -16468620 - L2 LINE L2 -31 3282 3220 197 62 0 31 chr6 172811208 172811240 -16468314 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 218 176 0 59 chr6 172811700 172811751 -16467803 + C-rich Low_complexity Low_complexity 3 50 0 2009 106 44 3 chr6 172812203 172812496 -16467058 - AluSx SINE Alu -7 305 1 235 297 65 29 chr6 172812686 172812824 -16466730 - MIR SINE MIR -117 145 3 1107 289 139 33 chr6 172812850 172813425 -16466129 + MLT2F LTR ERVL 10 645 -18 1216 293 77 43 chr6 172814037 172814578 -16464976 + ERVL LTR ERVL 772 1346 -4418 2156 120 21 0 chr6 172814578 172814869 -16464685 + AluSx SINE Alu 1 297 -15 1216 293 77 43 chr6 172814869 172815054 -16464500 + ERVL LTR ERVL 1346 1523 -4241 537 265 154 7 chr6 172816506 172816715 -16462839 + L2 LINE L2 2908 3167 -146 414 0 0 0 chr6 172816715 172816761 -16462793 + (TG)n Simple_repeat Simple_repeat 2 47 0 537 265 154 7 chr6 172816761 172816823 -16462731 + L2 LINE L2 3167 3219 -94 265 282 0 14 chr6 172818169 172818240 -16461314 + MIR3 SINE MIR 85 154 -54 705 195 5 65 chr6 172818248 172818433 -16461121 + MER5B DNA MER1_type 3 176 -2 380 202 11 21 chr6 172818890 172818984 -16460570 - L2 LINE L2 0 3313 3221 1025 118 0 0 chr6 172819167 172819303 -16460251 + AluJ SINE Alu 1 136 -176 1904 141 0 37 chr6 172819303 172819600 -16459954 + AluSx SINE Alu 1 286 -26 240 143 0 0 chr6 172819600 172819642 -16459912 + (TA)n Simple_repeat Simple_repeat 1 42 0 961 177 0 33 chr6 172819643 172819824 -16459730 + AluJ SINE Alu 127 301 -11 369 234 21 11 chr6 172820107 172820201 -16459353 - MIR3 SINE MIR -4 204 110 2837 153 48 10 chr6 172821976 172822478 -16457076 + L1MC1 LINE L1 209 729 -5811 5856 131 87 76 chr6 172822516 172823004 -16456550 + L1MC1 LINE L1 1049 1530 -5010 2488 75 0 3 chr6 172823004 172823310 -16456244 + AluY SINE Alu 1 305 -6 5856 131 87 76 chr6 172823310 172823982 -16455572 + L1MC1 LINE L1 1530 2193 -4347 2115 128 0 14 chr6 172823982 172824279 -16455275 + AluSx SINE Alu 1 293 -19 5856 131 87 76 chr6 172824279 172824394 -16455160 + L1MC1 LINE L1 2193 2305 -4235 2355 48 42 7 chr6 172824394 172824683 -16454871 - AluY SINE Alu -12 299 1 5856 131 87 76 chr6 172824683 172824777 -16454777 + L1MC1 LINE L1 2305 2435 -4105 198 0 0 0 chr6 172825299 172825321 -16454233 + (A)n Simple_repeat Simple_repeat 1 22 0 830 170 41 17 chr6 172825786 172825986 -16453568 + L1MC1 LINE L1 2386 2579 -3961 1763 189 0 3 chr6 172825986 172826292 -16453262 + AluJb SINE Alu 1 305 -7 830 170 41 17 chr6 172826292 172826328 -16453226 + L1MC1 LINE L1 2579 2613 -3927 39709 68 10 14 chr6 172826336 172829639 -16449915 + L1PA6 LINE L1 11 3326 -2841 2410 86 0 13 chr6 172829639 172829953 -16449601 + AluY SINE Alu 1 310 -1 39709 68 10 14 chr6 172829953 172832444 -16447110 + L1PA6 LINE L1 3326 5826 -341 378 0 0 0 chr6 172832444 172832486 -16447068 + (TCTCCC)n Simple_repeat Simple_repeat 2 43 0 7198 44 3 48 chr6 172832486 172834002 -16445552 + SVA Other Other 58 1386 0 39709 68 10 14 chr6 172834002 172834399 -16445155 + L1PA6 LINE L1 5824 6167 0 1873 239 10 45 chr6 172834401 172834982 -16444572 + L1MC1 LINE L1 2607 3167 -3373 * 4449 221 11 43 chr6 172834960 172834987 -16444567 + L1MC1 LINE L1 3522 3548 -2992 2214 101 0 3 chr6 172834987 172835275 -16444279 + AluSg SINE Alu 1 287 -23 4449 221 11 43 chr6 172835275 172835306 -16444248 + L1MC1 LINE L1 3548 3578 -2962 261 0 0 0 chr6 172835306 172835335 -16444219 + (CAT)n Simple_repeat Simple_repeat 2 30 0 4449 221 11 43 chr6 172835335 172836512 -16443042 + L1MC1 LINE L1 3578 4718 -1822 9039 150 22 19 chr6 172836512 172839071 -16440483 + L1MA4 LINE L1 3728 6289 -11 6150 155 27 20 chr6 172839082 172839165 -16440389 + L1MC1 LINE L1 5553 5634 -1093 2113 128 3 3 chr6 172839165 172839463 -16440091 - AluSx SINE Alu -14 298 1 6150 155 27 20 chr6 172839463 172840086 -16439468 + L1MC1 LINE L1 5634 6265 -462 2219 93 7 3 chr6 172840086 172840386 -16439168 - AluSc SINE Alu -8 301 1 6150 155 27 20 chr6 172840386 172840845 -16438709 + L1MC1 LINE L1 6265 6719 -8 189 266 47 31 chr6 172840860 172840924 -16438630 - MIR SINE MIR -180 82 18 2155 92 18 0 chr6 172841132 172841415 -16438139 + AluSx SINE Alu 1 288 -24 30 27 0 0 chr6 172841416 172841453 -16438101 + AT_rich Low_complexity Low_complexity 1 37 0 1027 264 153 27 chr6 172841493 172841944 -16437610 - MLT1H LTR MaLR 0 549 42 396 264 77 80 chr6 172842033 172842332 -16437222 - MLT1H-int LTR MaLR -71 1300 1003 299 311 19 10 chr6 172842545 172842648 -16436906 - MLT1H-int LTR MaLR -478 893 790 254 266 21 21 chr6 172842865 172842959 -16436595 - MLT1H-int LTR MaLR -1641 94 1 398 203 13 0 chr6 172842969 172843048 -16436506 + L1M4 LINE L1 4856 4935 -1211 273 222 12 62 chr6 172843052 172843133 -16436421 - MLT1H LTR MaLR -25 530 454 622 264 82 41 chr6 172843161 172843445 -16436109 - MLT1H LTR MaLR -254 276 31 22 0 0 0 chr6 172843962 172843984 -16435570 + AT_rich Low_complexity Low_complexity 1 22 0 975 171 152 0 chr6 172844653 172844870 -16434684 + L1MB2 LINE L1 5921 6170 -1 591 299 128 36 chr6 172845336 172845617 -16433937 + L2 LINE L2 2966 3272 0 1914 160 10 7 chr6 172846284 172846584 -16432970 - AluSx SINE Alu -11 301 1 734 232 102 102 chr6 172847508 172847930 -16431624 - MLT1F LTR MaLR -107 435 14 453 36 0 0 chr6 172847938 172847993 -16431561 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 209 151 19 0 chr6 172848003 172848056 -16431498 + (TA)n Simple_repeat Simple_repeat 1 54 0 341 247 0 12 chr6 172848117 172848202 -16431352 - MIR SINE MIR -99 163 80 233 254 24 127 chr6 172848253 172848379 -16431175 - L2 LINE L2 -15 3298 3186 195 68 23 45 chr6 172849335 172849379 -16430175 + (TCTCC)n Simple_repeat Simple_repeat 2 44 0 29 47 0 0 chr6 172850131 172850174 -16429380 + GC_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr6 172850370 172850406 -16429148 + GC_rich Low_complexity Low_complexity 1 36 0 212 330 142 0 chr6 172851216 172851322 -16428232 - L2 LINE L2 -218 3054 2934 316 254 136 0 chr6 172851896 172852006 -16427548 + L1ME4a LINE L1 5772 5896 -225 332 259 71 0 chr6 172852015 172852127 -16427427 + L1ME4a LINE L1 5974 6093 -28 363 291 34 40 chr6 172852298 172852446 -16427108 + MIR SINE MIR 68 214 -48 513 250 79 0 chr6 172852554 172852694 -16426860 + MLT1I LTR MaLR 1 151 -258 515 271 73 0 chr6 172852758 172852909 -16426645 + MLT1I LTR MaLR 248 409 0 397 244 100 44 chr6 172852909 172853069 -16426485 + MIR SINE MIR 69 237 -25 342 0 0 0 chr6 172853568 172853606 -16425948 + (TG)n Simple_repeat Simple_repeat 1 38 0 709 268 162 18 chr6 172854805 172855089 -16424465 + Charlie2 DNA MER1_type 1 325 -2537 1876 164 7 81 chr6 172855108 172855516 -16424038 - MLT1B LTR MaLR -12 378 1 994 148 31 179 chr6 172855516 172855874 -16423680 + Charlie2 DNA MER1_type 1879 2183 -679 1074 78 0 0 chr6 172855886 172856028 -16423526 + AluSp/q SINE Alu 168 309 -4 2342 198 57 7 chr6 172856033 172856609 -16422945 + Charlie2 DNA MER1_type 2255 2859 -3 2038 116 30 3 chr6 172856693 172856994 -16422560 - AluSx SINE Alu -1 311 3 3487 166 14 31 chr6 172857123 172857774 -16421780 + L1MB2 LINE L1 5426 6065 -106 1143 217 9 0 chr6 172857778 172857995 -16421559 + AluJo SINE Alu 3 221 -91 719 116 50 0 chr6 172858034 172858155 -16421399 + L1MB3 LINE L1 6050 6176 -7 441 288 53 0 chr6 172858184 172858316 -16421238 + MIR SINE MIR 50 188 -74 642 293 118 11 chr6 172858346 172858718 -16420836 + LTR16A LTR ERVL 28 439 -11 573 286 180 35 chr6 172858718 172859070 -16420484 + L2 LINE L2 2726 3166 -147 2062 98 9 67 chr6 172859070 172859397 -16420157 - AluSc SINE Alu -1 308 1 573 286 180 35 chr6 172859397 172859570 -16419984 + L2 LINE L2 3166 3313 0 411 333 55 14 chr6 172860535 172860754 -16418800 - MIR SINE MIR -33 229 2 192 246 53 18 chr6 172861274 172861331 -16418223 - MIR SINE MIR -99 163 105 231 266 16 0 chr6 172863958 172864022 -16415532 + GA-rich Low_complexity Low_complexity 3 67 0 1976 102 75 17 chr6 172864025 172864320 -16415234 + AluSx SINE Alu 1 312 0 182 171 98 0 chr6 172864342 172864383 -16415171 + L2 LINE L2 3220 3264 -8 1574 152 18 76 chr6 172865859 172865985 -16413569 + AluJo SINE Alu 3 135 -177 2215 112 3 0 chr6 172865985 172866279 -16413275 - AluSq SINE Alu -18 295 1 1574 152 18 76 chr6 172866279 172866481 -16413073 + AluJo SINE Alu 135 312 0 317 294 42 87 chr6 172868018 172868074 -16411480 - L3 LINE CR1 -187 1390 1333 2341 90 0 26 chr6 172868074 172868385 -16411169 - AluSq SINE Alu -10 303 1 317 294 42 87 chr6 172868385 172868593 -16410961 - L3 LINE CR1 -244 1333 1138 * 629 330 43 86 chr6 172868582 172869046 -16410508 - L2 LINE L2 -1 3271 2828 1822 91 0 4 chr6 172869070 172869312 -16410242 + AluSg SINE Alu 64 304 -6 2345 96 23 0 chr6 172869601 172869904 -16409650 - AluSx SINE Alu -2 310 1 1479 145 24 121 chr6 172870138 172870469 -16409085 + AluJo SINE Alu 9 307 -5 285 230 248 0 chr6 172870729 172870842 -16408712 - MIR SINE MIR -3 259 119 * 370 219 14 0 chr6 172870838 172870911 -16408643 + MIR SINE MIR 189 262 0 253 262 118 21 chr6 172870921 172871015 -16408539 - MIR SINE MIR -103 105 13 2280 104 3 0 chr6 172871158 172871457 -16408097 - AluSx SINE Alu -12 300 1 722 286 71 0 chr6 172871513 172871709 -16407845 + MER63A DNA MER1_type 1 210 0 227 368 0 0 chr6 172871805 172871881 -16407673 + HAL1 LINE L1 3 78 -2429 247 179 0 0 chr6 172872057 172872096 -16407458 - MSTA LTR MaLR 0 428 390 2169 105 21 0 chr6 172872096 172872382 -16407172 + AluSx SINE Alu 1 292 -20 356 270 25 99 chr6 172872480 172872768 -16406786 + L1MEd LINE L1 688 941 -5178 2098 142 0 3 chr6 172872768 172873079 -16406475 + AluSx SINE Alu 1 310 -2 356 270 25 99 chr6 172873079 172873182 -16406372 + L1MEd LINE L1 941 1050 -5069 1387 151 43 26 chr6 172873372 172873522 -16406032 + Tigger3(Golem) DNA MER2_type 1 158 -1073 243 0 0 0 chr6 172873522 172873549 -16406005 + (TG)n Simple_repeat Simple_repeat 1 27 0 1387 151 43 26 chr6 172873549 172873630 -16405924 + Tigger3(Golem) DNA MER2_type 158 236 -995 481 323 38 98 chr6 172873634 172874061 -16405493 + HAL1 LINE L1 1298 1698 -809 1589 118 99 19 chr6 172874062 172874353 -16405201 + AluSx SINE Alu 1 312 0 23 0 0 0 chr6 172874638 172874661 -16404893 + AT_rich Low_complexity Low_complexity 1 23 0 1911 163 19 3 chr6 172874956 172875263 -16404291 + AluJb SINE Alu 1 312 0 201 147 0 0 chr6 172875391 172875425 -16404129 + (GGA)n Simple_repeat Simple_repeat 3 36 0 2280 93 3 3 chr6 172875670 172875961 -16403593 + AluSg SINE Alu 1 291 -19 1584 154 42 18 chr6 172876226 172876512 -16403042 - AluJb SINE Alu -7 305 13 353 151 0 14 chr6 172876570 172876643 -16402911 + GA-rich Low_complexity Low_complexity 2 73 0 366 202 154 19 chr6 172877143 172877247 -16402307 - L1ME2 LINE L1 0 6164 6047 843 243 64 31 chr6 172878274 172878609 -16400945 + L1ME4a LINE L1 5299 5642 -528 231 36 0 0 chr6 172878617 172878645 -16400909 + (CA)n Simple_repeat Simple_repeat 2 29 0 259 178 31 155 chr6 172878700 172878829 -16400725 + L1MC4 LINE L1 7836 7948 -94 672 299 62 9 chr6 172878845 172879069 -16400485 + MIR SINE MIR 27 262 0 2037 81 44 7 chr6 172879126 172879422 -16400132 + AluY SINE Alu 1 307 -4 1298 108 0 0 chr6 172879422 172879588 -16399966 + AluSg/x SINE Alu 134 299 -13 352 273 67 18 chr6 172879601 172879766 -16399788 + L1ME4a LINE L1 5698 5870 -251 22 0 0 0 chr6 172879778 172879800 -16399754 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 172879812 172879833 -16399721 + AT_rich Low_complexity Low_complexity 1 21 0 193 220 17 25 chr6 172879859 172879977 -16399577 + (TA)n Simple_repeat Simple_repeat 1 117 0 271 224 56 98 chr6 172880006 172880149 -16399405 + L1ME4a LINE L1 5961 6097 -24 * 415 246 91 64 chr6 172880138 172880321 -16399233 + L1ME LINE L1 5541 5732 -430 1638 190 7 7 chr6 172880321 172880616 -16398938 + AluJo SINE Alu 1 295 -17 415 246 91 64 chr6 172880616 172880652 -16398902 + L1ME LINE L1 5732 5766 -396 719 190 0 22 chr6 172881027 172881164 -16398390 - FRAM SINE Alu 0 40 1 30 27 0 0 chr6 172881237 172881274 -16398280 + AT_rich Low_complexity Low_complexity 1 37 0 182 71 0 71 chr6 172882040 172882082 -16397472 + (T)n Simple_repeat Simple_repeat 1 39 0 1989 97 9 64 chr6 172882090 172882420 -16397134 - AluSx SINE Alu 0 312 1 267 190 0 0 chr6 172883221 172883279 -16396275 + (CA)n Simple_repeat Simple_repeat 2 59 0 2351 96 0 0 chr6 172884758 172885087 -16394467 - AluSx SINE Alu 0 329 1 2090 90 6 42 chr6 172885620 172885932 -16393622 + AluY SINE Alu 5 305 -6 2189 81 0 75 chr6 172885937 172886259 -16393295 + AluSx SINE Alu 1 298 -14 2359 101 39 72 chr6 172886612 172886950 -16392604 - THE1C LTR MaLR -2 373 25 2142 111 7 0 chr6 172886950 172887239 -16392315 + AluSg SINE Alu 5 295 -15 2083 125 3 7 chr6 172887240 172887537 -16392017 + AluSp SINE Alu 1 296 -17 2359 101 39 72 chr6 172887537 172887582 -16391972 - THE1C LTR MaLR -349 26 1 1865 169 0 13 chr6 172887988 172888295 -16391259 + AluJo SINE Alu 3 305 -7 2033 128 0 0 chr6 172888299 172888587 -16390967 - AluSp SINE Alu -15 298 11 23 54 0 0 chr6 172888924 172888961 -16390593 + AT_rich Low_complexity Low_complexity 1 37 0 2044 128 0 0 chr6 172889048 172889350 -16390204 - AluSx SINE Alu 0 304 3 3658 208 12 52 chr6 172891329 172891921 -16387633 - L1ME1 LINE L1 -5 6161 5614 1812 149 14 0 chr6 172891921 172892203 -16387351 + AluJo SINE Alu 1 286 -26 3658 208 12 52 chr6 172892203 172892495 -16387059 - L1ME1 LINE L1 -552 5614 5312 1592 174 23 0 chr6 172892506 172892765 -16386789 + AluJb SINE Alu 3 267 -45 1520 123 0 25 chr6 172893155 172893391 -16386163 + AluJo SINE Alu 30 259 -53 186 43 0 0 chr6 172893409 172893432 -16386122 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 872 224 110 9 chr6 172895962 172896181 -16383373 + MIR SINE MIR 20 260 -2 279 0 0 0 chr6 172896233 172896264 -16383290 + (TG)n Simple_repeat Simple_repeat 2 32 0 2098 104 7 0 chr6 172896265 172896544 -16383010 - AluSx SINE Alu -31 281 1 2048 146 7 0 chr6 172896870 172897178 -16382376 - AluSx SINE Alu -2 310 1 356 241 184 6 chr6 172898785 172898943 -16380611 - MER5A DNA MER1_type 0 189 4 2037 117 4 0 chr6 172898959 172899275 -16380279 - AluSx SINE Alu 0 317 1 1978 110 40 10 chr6 172899423 172899724 -16379830 + AluSg SINE Alu 1 310 0 302 276 61 0 chr6 172900787 172900885 -16378669 + L1MC4 LINE L1 6599 6702 -1340 909 234 29 73 chr6 172901483 172901778 -16377776 - MLT1B LTR MaLR 0 390 84 2277 103 0 0 chr6 172901778 172902070 -16377484 - AluSg SINE Alu -18 292 1 909 234 29 73 chr6 172902070 172902124 -16377430 - MLT1B LTR MaLR -306 84 29 2615 39 0 7 chr6 172902124 172902433 -16377121 - AluY SINE Alu -4 307 1 2292 98 3 0 chr6 172902433 172902730 -16376824 - AluSp SINE Alu -15 298 1 909 234 29 73 chr6 172902730 172902817 -16376737 - MLT1B LTR MaLR -255 135 46 2093 181 49 96 chr6 172902829 172903361 -16376193 - MLT2B1 LTR ERVL -13 507 1 596 239 77 82 chr6 172903470 172903909 -16375645 + L1MEd LINE L1 692 1128 -4991 285 254 18 53 chr6 172904072 172904186 -16375368 + L1MEd LINE L1 2719 2828 -3301 370 49 33 0 chr6 172904277 172904338 -16375216 + (TA)n Simple_repeat Simple_repeat 1 63 0 1780 131 98 0 chr6 172904402 172904677 -16374877 - AluSx SINE Alu -10 302 1 1271 162 19 72 chr6 172905225 172905370 -16374184 + AluJo SINE Alu 3 129 -183 2186 120 3 0 chr6 172905370 172905671 -16373883 + AluSq SINE Alu 1 302 -11 1271 162 19 72 chr6 172905671 172905790 -16373764 + AluJo SINE Alu 129 253 -59 2212 95 0 3 chr6 172905859 172906173 -16373381 + AluSx SINE Alu 1 313 0 24 0 0 0 chr6 172907362 172907386 -16372168 + AT_rich Low_complexity Low_complexity 1 24 0 2225 124 0 6 chr6 172907479 172907793 -16371761 + AluSx SINE Alu 1 312 0 25 31 0 0 chr6 172907823 172907855 -16371699 + AT_rich Low_complexity Low_complexity 1 32 0 367 274 139 68 chr6 172909038 172909339 -16370215 + L1MC4a LINE L1 5390 5743 -2065 2286 114 3 0 chr6 172909339 172909636 -16369918 - AluSq SINE Alu -14 299 2 367 274 139 68 chr6 172909636 172909837 -16369717 + L1MC4a LINE L1 5743 5928 -1880 23 0 0 0 chr6 172909991 172910014 -16369540 + AT_rich Low_complexity Low_complexity 1 23 0 1598 204 3 19 chr6 172912054 172912363 -16367191 + AluJo SINE Alu 1 304 -8 253 281 93 52 chr6 172912460 172912730 -16366824 + L1 LINE L1 4738 5018 -1128 2320 58 51 3 chr6 172912777 172913071 -16366483 - AluY SINE Alu -3 308 1 2359 74 7 0 chr6 172913218 172913527 -16366027 - AluY SINE Alu 0 311 1 1843 157 0 11 chr6 172913638 172913963 -16365591 - AluJb SINE Alu 0 322 1 1141 81 44 12 chr6 172914173 172914333 -16365221 + L1PA10 LINE L1 5999 6163 -5 525 323 74 36 chr6 172914376 172914973 -16364581 - L1MEc LINE L1 -3606 2523 1948 347 154 0 0 chr6 172916095 172916160 -16363394 + MER69 DNA AcHobo 2089 2153 -373 728 207 7 14 chr6 172916167 172916307 -16363247 + FAM SINE Alu 33 171 -14 981 203 37 109 chr6 172916309 172916714 -16362840 + MER69 DNA AcHobo 2140 2515 -11 1534 203 10 33 chr6 172916757 172917057 -16362497 + AluJo SINE Alu 3 295 -7 2054 155 3 0 chr6 172917057 172917360 -16362194 - AluSx SINE Alu -8 304 1 2828 145 106 0 chr6 172917458 172917941 -16361613 + Tigger3b DNA MER2_type 32 565 -666 2143 127 7 0 chr6 172917952 172918260 -16361294 - AluSp SINE Alu -3 310 1 1305 187 0 49 chr6 172918302 172918499 -16361055 + AluJo SINE Alu 1 206 -106 194 62 31 0 chr6 172918499 172918531 -16361023 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 2172 109 0 40 chr6 172918533 172918837 -16360717 - AluSx SINE Alu -20 292 1 1305 187 0 49 chr6 172918837 172918903 -16360651 + AluJo SINE Alu 207 254 -58 501 132 123 0 chr6 172918979 172919093 -16360461 + Tigger3b DNA MER2_type 566 693 -538 1514 188 0 11 chr6 172919094 172919370 -16360184 + AluJo SINE Alu 1 273 -39 2237 118 0 3 chr6 172919371 172919668 -16359886 - AluSx SINE Alu -12 300 5 203 138 0 0 chr6 172919677 172919706 -16359848 + (GA)n Simple_repeat Simple_repeat 2 30 0 670 164 23 23 chr6 172919709 172919880 -16359674 + GA-rich Low_complexity Low_complexity 4 174 0 497 225 17 12 chr6 172919910 172920083 -16359471 + GA-rich Low_complexity Low_complexity 1 174 0 3107 138 47 4 chr6 172920099 172920607 -16358947 + Tigger3b DNA MER2_type 703 1232 0 2237 120 0 0 chr6 172920729 172921029 -16358525 + AluSc SINE Alu 1 300 -9 286 279 36 21 chr6 172921147 172921287 -16358267 - L1MEc LINE L1 -4946 1364 1223 24 32 0 0 chr6 172921296 172921327 -16358227 + AT_rich Low_complexity Low_complexity 1 31 0 1067 286 77 46 chr6 172921571 172921798 -16357756 - L1ME3A LINE L1 -220 5950 5731 2130 116 3 28 chr6 172921798 172922118 -16357436 + AluSx SINE Alu 1 312 0 1067 286 77 46 chr6 172922118 172922477 -16357077 - L1ME3A LINE L1 -439 5731 5346 976 266 15 6 chr6 172922482 172922821 -16356733 - L1ME3A LINE L1 -842 5304 4963 411 255 44 26 chr6 172923100 172923371 -16356183 + L1M4 LINE L1 3125 3400 -2746 291 217 113 52 chr6 172923516 172923631 -16355923 - L1MEc LINE L1 -4935 1184 1063 1175 153 6 0 chr6 172923633 172923816 -16355738 - AluSg/x SINE Alu -5 304 121 2565 50 0 31 chr6 172924477 172924797 -16354757 + AluY SINE Alu 2 311 0 631 171 7 14 chr6 172924818 172924958 -16354596 + GA-rich Low_complexity Low_complexity 2 140 0 2175 67 14 21 chr6 172925346 172925628 -16353926 - AluSq SINE Alu -32 281 2 383 335 44 6 chr6 172925629 172925787 -16353767 + MIR SINE MIR 88 251 -11 29 60 0 0 chr6 172926272 172926322 -16353232 + AT_rich Low_complexity Low_complexity 1 50 0 2065 120 3 0 chr6 172926607 172926933 -16352621 + AluSx SINE Alu 1 327 0 2298 116 0 0 chr6 172927419 172927729 -16351825 + AluSx SINE Alu 1 310 -2 200 329 131 7 chr6 172928112 172928249 -16351305 - L2 LINE L2 -211 3061 2908 1752 162 0 26 chr6 172929104 172929406 -16350148 - AluJb SINE Alu -10 302 9 213 316 11 32 chr6 172929589 172929684 -16349870 + CT-rich Low_complexity Low_complexity 2 94 0 378 0 0 0 chr6 172930583 172930625 -16348929 + (CA)n Simple_repeat Simple_repeat 2 43 0 335 335 90 24 chr6 172930649 172930816 -16348738 - MIR SINE MIR -36 226 49 186 169 70 84 chr6 172930927 172930998 -16348556 - L3b LINE CR1 -390 1193 1124 1587 166 37 4 chr6 172931626 172931897 -16347657 - AluJb SINE Alu -32 280 1 1870 167 0 7 chr6 172931939 172932238 -16347316 - AluJb SINE Alu -15 297 1 346 355 14 0 chr6 172932500 172932641 -16346913 - MIR SINE MIR -2 260 118 201 74 0 0 chr6 172932737 172932764 -16346790 + (A)n Simple_repeat Simple_repeat 1 27 0 368 163 20 71 chr6 172932791 172932889 -16346665 - MLT1J LTR MaLR -44 467 375 430 213 31 63 chr6 172932914 172933041 -16346513 - MLT1J LTR MaLR -385 126 4 1830 174 0 3 chr6 172933747 172934040 -16345514 - AluJb SINE Alu -20 292 1 613 287 61 0 chr6 172934323 172934487 -16345067 - MER91A DNA MER1_type -3 193 20 251 331 82 85 chr6 172935173 172935551 -16344003 + L2 LINE L2 2894 3270 -2 26 74 0 0 chr6 172939428 172939482 -16340072 + AT_rich Low_complexity Low_complexity 1 54 0 222 150 0 0 chr6 172940261 172940301 -16339253 + (CCCCAG)n Simple_repeat Simple_repeat 6 45 0 29 0 0 0 chr6 172940320 172940349 -16339205 + GC_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 172940697 172940734 -16338820 + GC_rich Low_complexity Low_complexity 1 37 0 237 65 0 0 chr6 172940748 172940779 -16338775 + (CGG)n Simple_repeat Simple_repeat 2 32 0 38 68 0 0 chr6 172940779 172940852 -16338702 + GC_rich Low_complexity Low_complexity 1 73 0 218 152 38 13 chr6 172940859 172940938 -16338616 + (CGG)n Simple_repeat Simple_repeat 2 82 0 25 0 0 0 chr6 172940997 172941022 -16338532 + GC_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr6 172941088 172941109 -16338445 + (TCC)n Simple_repeat Simple_repeat 1 21 0 384 123 0 0 chr6 172941225 172941298 -16338256 + (CCA)n Simple_repeat Simple_repeat 3 75 0 441 54 0 0 chr6 172941325 172941381 -16338173 + (CAG)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chr6 172941405 172941429 -16338125 + GC_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr6 172941621 172941665 -16337889 + GC_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr6 172941707 172941729 -16337825 + GC_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 172941794 172941820 -16337734 + GC_rich Low_complexity Low_complexity 1 26 0 229 65 0 0 chr6 172941897 172941928 -16337626 + (CGG)n Simple_repeat Simple_repeat 1 31 0 390 94 0 0 chr6 172941928 172941992 -16337562 + (GGA)n Simple_repeat Simple_repeat 1 64 0 388 162 0 14 chr6 172941992 172942066 -16337488 + (CGG)n Simple_repeat Simple_repeat 1 73 0 25 0 0 0 chr6 172942125 172942150 -16337404 + GC_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr6 172942161 172942189 -16337365 + GC_rich Low_complexity Low_complexity 1 28 0 201 39 0 0 chr6 172942353 172942379 -16337175 + (CGG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr6 172942935 172942956 -16336598 + AT_rich Low_complexity Low_complexity 1 21 0 34 72 0 0 chr6 172943054 172943123 -16336431 + AT_rich Low_complexity Low_complexity 1 69 0 261 0 0 0 chr6 172945659 172945688 -16333866 + (T)n Simple_repeat Simple_repeat 1 29 0 2105 132 0 0 chr6 172948446 172948742 -16330812 - AluJb SINE Alu -15 297 2 767 154 19 45 chr6 172949212 172949368 -16330186 - L1MB3 LINE L1 0 6183 6032 23 0 0 0 chr6 172949823 172949846 -16329708 + AT_rich Low_complexity Low_complexity 1 23 0 201 308 0 0 chr6 172953091 172953143 -16326411 - L2 LINE L2 -14 3299 3248 493 229 55 71 chr6 172953364 172953547 -16326007 + MIR SINE MIR 9 188 -74 703 173 0 9 chr6 172956005 172956115 -16323439 + FLAM_C SINE Alu 2 110 -33 1454 203 38 3 chr6 172957030 172957320 -16322234 - AluJo SINE Alu -12 300 1 321 282 168 13 chr6 172957531 172957680 -16321874 - MIR SINE MIR 0 262 91 233 284 193 18 chr6 172957727 172957836 -16321718 - MER5A DNA MER1_type -1 188 61 1633 151 0 22 chr6 172957924 172958196 -16321358 - AluJo SINE Alu -3 309 44 1769 137 19 32 chr6 172958251 172958566 -16320988 - AluJb SINE Alu -1 311 1 429 226 69 0 chr6 172960818 172960920 -16318634 - L2 LINE L2 -18 3295 3187 186 306 91 66 chr6 172962098 172962219 -16317335 - MIR SINE MIR -116 146 23 304 253 414 11 chr6 172962864 172963050 -16316504 - MIR SINE MIR 0 262 2 1957 123 7 3 chr6 172963176 172963461 -16316093 - AluSx SINE Alu -26 286 1 686 203 13 106 chr6 172963927 172963991 -16315563 - MER3 DNA MER1_type -2 207 139 2027 156 3 0 chr6 172963991 172964299 -16315255 + AluSx SINE Alu 1 309 -3 1905 128 43 7 chr6 172964308 172964590 -16314964 + AluJo SINE Alu 1 292 -20 686 203 13 106 chr6 172964590 172964742 -16314812 - MER3 DNA MER1_type -78 131 2 2151 106 3 7 chr6 172964880 172965182 -16314372 - AluSg1 SINE Alu -8 301 1 27 81 0 0 chr6 172966137 172966199 -16313355 + AT_rich Low_complexity Low_complexity 1 62 0 218 246 31 0 chr6 172966527 172966592 -16312962 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 183 42 0 0 chr6 172967088 172967112 -16312442 + (TTTCC)n Simple_repeat Simple_repeat 2 25 0 189 196 0 0 chr6 172967285 172967331 -16312223 + T-rich Low_complexity Low_complexity 1 46 0 342 368 22 0 chr6 172967528 172967664 -16311890 + MIR SINE MIR 117 255 -7 2200 115 3 3 chr6 172967737 172968041 -16311513 + AluSx SINE Alu 1 304 -8 2415 120 53 8 chr6 172968104 172968463 -16311091 - THE1C LTR MaLR 0 375 1 213 39 0 0 chr6 172968551 172968577 -16310977 + (A)n Simple_repeat Simple_repeat 1 26 0 359 270 0 61 chr6 172969022 172969137 -16310417 + MIR SINE MIR 118 225 -37 34 0 0 0 chr6 172969365 172969399 -16310155 + AT_rich Low_complexity Low_complexity 1 34 0 1460 201 0 4 chr6 172969406 172969660 -16309894 - AluJo SINE Alu -59 253 1 228 316 163 0 chr6 172970242 172970340 -16309214 - MIR SINE MIR -70 192 79 1537 209 45 21 chr6 172970445 172970776 -16308778 - MER58B DNA MER1_type -2 339 1 204 40 0 0 chr6 172973393 172973418 -16306136 + (A)n Simple_repeat Simple_repeat 1 25 0 252 303 29 4 chr6 172973996 172974118 -16305436 - MIR3 SINE MIR -3 205 79 198 338 40 14 chr6 172974313 172974387 -16305167 - L2 LINE L2 -209 3063 2988 1393 273 135 24 chr6 172974534 172975066 -16304488 - MLT1E LTR MaLR 0 593 3 1215 196 83 111 chr6 172975112 172975509 -16304045 - MLT1B LTR MaLR -4 386 1 337 328 58 12 chr6 172975614 172975785 -16303769 + MIR SINE MIR 84 262 0 1256 154 51 0 chr6 172975830 172976025 -16303529 - AluJb SINE Alu -27 285 81 324 0 0 0 chr6 172976617 172976653 -16302901 + (TG)n Simple_repeat Simple_repeat 2 37 0 230 178 0 0 chr6 172976653 172976698 -16302856 + LTR66 LTR ERVL 394 438 -172 294 244 23 0 chr6 172976699 172976785 -16302769 - L1MC4 LINE L1 -1341 6701 6614 1882 126 10 36 chr6 172976792 172977094 -16302460 - AluSx SINE Alu -16 296 3 1672 131 66 18 chr6 172977822 172978096 -16301458 + AluJb SINE Alu 6 292 -20 248 326 11 0 chr6 172979624 172979713 -16299841 + MER103 DNA DNA 32 121 -45 185 304 0 0 chr6 172979899 172979945 -16299609 - L2 LINE L2 -3 3269 3224 22 35 0 0 chr6 172980930 172980959 -16298595 + AT_rich Low_complexity Low_complexity 1 29 0 1490 104 181 24 chr6 172980959 172981208 -16298346 + AluSx SINE Alu 1 288 -24 1770 152 31 17 chr6 172981210 172981500 -16298054 + AluJo SINE Alu 1 294 -18 1251 211 16 82 chr6 172981515 172981895 -16297659 - L1MC4 LINE L1 -1 8041 7687 234 0 0 0 chr6 172981955 172981981 -16297573 + (T)n Simple_repeat Simple_repeat 1 26 0 354 333 26 0 chr6 172982407 172982524 -16297030 - MIR SINE MIR -96 166 47 398 291 44 6 chr6 172982565 172982723 -16296831 + MER117 DNA MER1_type 3 166 -31 277 338 56 25 chr6 172982819 172982979 -16296575 - MIR SINE MIR -44 218 54 237 254 0 15 chr6 172983637 172983704 -16295850 - L2 LINE L2 -254 3059 2994 332 303 90 0 chr6 172984232 172984321 -16295233 - L2 LINE L2 -38 3234 3138 256 293 49 12 chr6 172984486 172984568 -16294986 - MIR SINE MIR -154 108 24 395 314 74 68 chr6 172984815 172985111 -16294443 + L3 LINE CR1 597 894 -683 270 275 88 0 chr6 172985291 172985382 -16294172 + L3 LINE CR1 1294 1392 -185 974 128 0 0 chr6 172985867 172986000 -16293554 - AluSq/x SINE Alu -179 133 1 182 261 23 68 chr6 172986253 172986341 -16293213 + MIR3 SINE MIR 15 98 -110 255 303 182 12 chr6 172987133 172987298 -16292256 - MIR SINE MIR -47 215 23 2249 121 0 0 chr6 172988339 172988644 -16290910 + AluSx SINE Alu 1 305 -7 2094 120 3 10 chr6 172988793 172989094 -16290460 - AluSx SINE Alu -13 299 1 467 292 105 61 chr6 172990172 172990449 -16289105 + L2 LINE L2 2980 3268 -4 356 188 0 75 chr6 172990964 172991044 -16288510 - L2 LINE L2 -37 3276 3203 236 273 43 50 chr6 172991056 172991195 -16288359 + L2 LINE L2 2224 2361 -953 2366 95 16 0 chr6 172991684 172991990 -16287564 - AluSx SINE Alu -1 311 1 1327 148 18 14 chr6 172991992 172992215 -16287339 - AluJo SINE Alu -13 299 76 283 348 59 29 chr6 172994261 172994465 -16285089 - L3b LINE CR1 -158 1425 1216 31 76 0 0 chr6 172994489 172994555 -16284999 + AT_rich Low_complexity Low_complexity 1 66 0 811 142 50 0 chr6 172994580 172994700 -16284854 + FLAM_A SINE Alu 5 130 -3 2313 65 3 23 chr6 172998882 172999191 -16280363 + AluY SINE Alu 1 303 -8 1488 140 14 5 chr6 172999671 172999893 -16279661 - AluJb SINE Alu -12 300 77 258 209 67 76 chr6 173000144 173000249 -16279305 + MER5B DNA MER1_type 2 105 -73 222 191 162 0 chr6 173000314 173000382 -16279172 + MER5A DNA MER1_type 32 110 -79 285 254 119 52 chr6 173000404 173000538 -16279016 + MIR3 SINE MIR 28 170 -38 1883 161 7 3 chr6 173000595 173000893 -16278661 - AluJb SINE Alu -13 299 1 22 70 0 0 chr6 173001055 173001098 -16278456 + AT_rich Low_complexity Low_complexity 1 43 0 203 0 37 0 chr6 173002050 173002077 -16277477 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 1347 64 0 17 chr6 173002477 173002674 -16276880 + L1PA6 LINE L1 5977 6154 0 1175 190 86 31 chr6 173003073 173003428 -16276126 - MSTC LTR MaLR 0 428 6 254 313 12 0 chr6 173003844 173003927 -16275627 - LTR67 LTR ERVL -396 161 78 181 264 88 44 chr6 173004304 173004395 -16275159 + L2 LINE L2 3179 3273 -40 191 179 54 36 chr6 173005424 173005480 -16274074 + MIR3 SINE MIR 106 162 -46 663 283 19 47 chr6 173005590 173005802 -16273752 - MIR SINE MIR 0 262 57 3573 168 25 7 chr6 173006042 173006649 -16272905 - L1MB5 LINE L1 -9 6165 5548 446 272 117 6 chr6 173006679 173006841 -16272713 - MIR SINE MIR -13 249 70 698 222 54 44 chr6 173006900 173007271 -16272283 - MER113 DNA MER1_type? -14 507 87 21 57 0 0 chr6 173007567 173007602 -16271952 + AT_rich Low_complexity Low_complexity 1 35 0 583 233 60 80 chr6 173008664 173008965 -16270589 - HAL1 LINE L1 -326 2181 1887 1127 250 157 31 chr6 173009253 173009864 -16269690 - HAL1 LINE L1 -687 1820 1133 365 300 75 36 chr6 173009869 173010076 -16269478 - HAL1 LINE L1 -1416 1091 867 2280 85 3 38 chr6 173010076 173010393 -16269161 - AluSg SINE Alu -4 306 1 365 300 75 36 chr6 173010393 173010492 -16269062 - HAL1 LINE L1 -1640 867 773 480 245 58 75 chr6 173010871 173011059 -16268495 - HAL1 LINE L1 -2319 188 4 1603 161 10 52 chr6 173016095 173016405 -16263149 + AluJo SINE Alu 1 297 -15 266 183 11 108 chr6 173017614 173017663 -16261891 + MIR SINE MIR 123 160 -102 1721 173 17 7 chr6 173017663 173017963 -16261591 - AluJo SINE Alu -9 303 1 266 183 11 108 chr6 173017963 173018006 -16261548 + MIR SINE MIR 160 206 -56 21 36 0 0 chr6 173019492 173019520 -16260034 + AT_rich Low_complexity Low_complexity 1 28 0 242 208 0 0 chr6 173019629 173019682 -16259872 + (TG)n Simple_repeat Simple_repeat 2 54 0 247 265 0 0 chr6 173020001 173020069 -16259485 + MIR SINE MIR 159 226 -36 617 261 136 17 chr6 173020258 173020512 -16259042 - MIR SINE MIR -1 261 2 261 0 0 0 chr6 173020602 173020631 -16258923 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 378 0 0 0 chr6 173020630 173020672 -16258882 + (CA)n Simple_repeat Simple_repeat 1 42 0 428 287 37 30 chr6 173021020 173021184 -16258370 - MIR SINE MIR -43 219 55 1686 158 15 0 chr6 173021633 173021899 -16257655 - MER7C DNA MER2_type 0 603 334 2904 146 28 37 chr6 173021899 173022413 -16257141 + L1MA4 LINE L1 5738 6248 -52 2046 147 0 10 chr6 173022413 173022725 -16256829 + AluSx SINE Alu 1 309 -3 2904 146 28 37 chr6 173022725 173022778 -16256776 + L1MA4 LINE L1 6248 6300 0 1433 165 47 4 chr6 173022792 173023046 -16256508 - MER7C DNA MER2_type -283 319 55 1171 72 7 7 chr6 173023048 173023201 -16256353 - AluY SINE Alu -17 294 142 463 154 0 0 chr6 173023203 173023268 -16256286 - MER7C DNA MER2_type -537 65 1 1703 159 0 34 chr6 173025248 173025576 -16253978 + AluJb SINE Alu 1 318 0 198 274 130 55 chr6 173025963 173026109 -16253445 - L2 LINE L2 -925 2389 2233 291 301 35 0 chr6 173026136 173026249 -16253305 - MER5B DNA MER1_type 0 178 62 2648 247 227 41 chr6 173028424 173030466 -16249088 - HAL1 LINE L1 -2 2505 84 2085 171 17 8 chr6 173032322 173032684 -16246870 - MLT1A1 LTR MaLR 0 365 1 233 225 38 88 chr6 173035156 173035236 -16244318 + L2 LINE L2 3168 3243 -29 369 298 61 30 chr6 173035404 173035535 -16244019 - MIR SINE MIR -125 137 3 234 260 233 27 chr6 173036042 173036192 -16243362 + MIR SINE MIR 69 249 -13 2008 121 7 19 chr6 173036248 173036555 -16242999 - AluSq SINE Alu -10 303 1 1635 170 40 10 chr6 173037997 173038297 -16241257 - AluJo SINE Alu -3 309 1 950 102 0 0 chr6 173040813 173040950 -16238604 - AluSc SINE Alu 0 309 173 234 276 116 84 chr6 173041044 173041355 -16238199 + L2 LINE L2 2657 2977 -337 2055 124 0 29 chr6 173041638 173041945 -16237609 - AluSx SINE Alu -14 298 1 472 256 66 0 chr6 173042159 173042296 -16237258 - LTR67 LTR ERVL 0 557 412 227 338 0 0 chr6 173042452 173042520 -16237034 - LTR67 LTR ERVL -333 224 157 215 254 90 66 chr6 173042895 173043017 -16236537 - MIR3 SINE MIR -73 135 11 2347 89 0 6 chr6 173044385 173044699 -16234855 + AluSx SINE Alu 1 312 0 211 217 0 22 chr6 173045361 173045407 -16234147 + (TATG)n Simple_repeat Simple_repeat 3 47 0 276 271 36 50 chr6 173047962 173048102 -16231452 - MER112 DNA MER1_type -6 254 117 1413 189 0 17 chr6 173049835 173050073 -16229481 + MER46A DNA MER2_type 1 234 -2 1056 132 0 0 chr6 173050145 173050289 -16229265 - AluSq SINE Alu -36 277 134 186 319 14 28 chr6 173050597 173050669 -16228885 + MIR3 SINE MIR 128 198 -10 198 182 0 0 chr6 173054725 173054758 -16224796 + L2 LINE L2 3271 3303 -10 183 42 0 0 chr6 173054807 173054831 -16224723 + (TTG)n Simple_repeat Simple_repeat 2 25 0 375 233 90 126 chr6 173055431 173055790 -16223764 - L1ME4a LINE L1 -126 5995 5654 1890 104 24 88 chr6 173055790 173056118 -16223436 - AluSc SINE Alu -2 307 1 375 233 90 126 chr6 173056118 173056204 -16223350 - L1ME4a LINE L1 -467 5654 5566 889 256 69 8 chr6 173056466 173056712 -16222842 - L1ME2 LINE L1 -2 6162 5902 4119 165 44 65 chr6 173056848 173056954 -16222600 + L1MB3 LINE L1 4941 5048 -1135 1951 127 57 17 chr6 173056954 173057254 -16222300 - AluSx SINE Alu 0 312 1 4119 165 44 65 chr6 173057254 173058430 -16221124 + L1MB3 LINE L1 5048 6182 -1 285 271 131 0 chr6 173058847 173058954 -16220600 - L2 LINE L2 -5 3267 3147 297 258 31 41 chr6 173058964 173059061 -16220493 + MER103 DNA DNA 4 99 -67 243 61 0 0 chr6 173059664 173059697 -16219857 + (CA)n Simple_repeat Simple_repeat 2 34 0 324 293 96 38 chr6 173059862 173060207 -16219347 - L1ME2 LINE L1 -217 5947 5583 2210 114 3 0 chr6 173060223 173060529 -16219025 + AluSq SINE Alu 1 307 -6 2297 96 0 0 chr6 173060531 173060824 -16218730 + AluSc SINE Alu 5 297 -12 321 26 0 0 chr6 173061109 173061147 -16218407 + (CTG)n Simple_repeat Simple_repeat 1 38 0 432 0 0 0 chr6 173061147 173061195 -16218359 + (TTC)n Simple_repeat Simple_repeat 2 49 0 2114 119 0 0 chr6 173061195 173061502 -16218052 - AluSx SINE Alu 0 307 1 24 0 0 0 chr6 173061587 173061611 -16217943 + AT_rich Low_complexity Low_complexity 1 24 0 187 152 0 87 chr6 173061889 173061935 -16217619 - L2 LINE L2 -107 3206 3165 190 175 158 0 chr6 173062063 173062120 -16217434 + L2 LINE L2 3200 3265 -7 2283 101 3 0 chr6 173062618 173062915 -16216639 + AluSp SINE Alu 1 298 -15 857 81 0 0 chr6 173066580 173066691 -16212863 + AluSc SINE Alu 196 306 -3 1166 250 119 55 chr6 173067947 173068586 -16210968 - L1MC4a LINE L1 -1675 6116 5437 1753 176 3 7 chr6 173068586 173068888 -16210666 + MER46B DNA MER2_type 1 176 -60 347 264 29 29 chr6 173068906 173069080 -16210474 - L1MC4a LINE L1 -2375 5416 5243 809 237 67 33 chr6 173069113 173069167 -16210387 - MLT2D LTR ERVL -16 381 330 312 91 0 0 chr6 173069167 173069211 -16210343 + (CA)n Simple_repeat Simple_repeat 1 44 0 809 237 67 33 chr6 173069211 173069474 -16210080 - MLT2D LTR ERVL -67 330 83 611 263 52 66 chr6 173069891 173070209 -16209345 - MER90 LTR ERV1 -7 607 293 2430 64 10 0 chr6 173070209 173070504 -16209050 + AluSp SINE Alu 16 313 0 611 263 52 66 chr6 173070504 173070550 -16209004 - MER90 LTR ERV1 -321 293 248 819 253 131 81 chr6 173070706 173071552 -16208002 - L1MC4a LINE L1 -1634 4495 3598 2064 105 36 36 chr6 173071552 173071856 -16207698 + AluSx SINE Alu 1 304 -8 819 253 131 81 chr6 173071856 173071931 -16207623 - L1MC4a LINE L1 -2531 3598 3528 844 163 0 35 chr6 173071987 173072128 -16207426 - AluJo SINE Alu -175 137 2 363 242 50 37 chr6 173072143 173072304 -16207250 - L1MC4a LINE L1 -2659 3470 3308 440 270 69 60 chr6 173072371 173072690 -16206864 - L1MC4a LINE L1 -2931 3198 2877 2326 114 0 0 chr6 173073042 173073350 -16206204 - AluSg SINE Alu 0 310 3 310 311 144 48 chr6 173073350 173073620 -16205934 - L1MC4 LINE L1 -223 7819 7524 245 218 141 0 chr6 173073637 173073715 -16205839 - L1MC5 LINE L1 -568 7393 7305 481 272 84 11 chr6 173073789 173073980 -16205574 + MLT1G LTR MaLR 363 567 -23 249 330 0 10 chr6 173074145 173074245 -16205309 - L1MC4a LINE L1 -5573 546 448 234 308 39 0 chr6 173074576 173074654 -16204900 - L1MC4a LINE L1 -6035 84 4 1781 260 30 4 chr6 173074776 173075273 -16204281 - MER20B DNA MER1_type -49 734 225 603 282 40 26 chr6 173075504 173075777 -16203777 - MER20B DNA MER1_type -79 704 428 664 289 237 40 chr6 173076202 173076831 -16202723 + L2 LINE L2 970 1722 -1592 196 400 0 0 chr6 173076863 173076943 -16202611 + L2 LINE L2 1811 1890 -1424 1699 158 30 21 chr6 173076971 173077134 -16202420 - L1MA8 LINE L1 -4 6287 6127 2331 107 0 7 chr6 173077134 173077443 -16202111 - AluSg SINE Alu -2 308 2 1699 158 30 21 chr6 173077443 173077609 -16201945 - L1MA8 LINE L1 -164 6127 5955 428 202 41 0 chr6 173078099 173078217 -16201337 - L1MA6 LINE L1 -266 6037 5904 976 306 69 47 chr6 173078217 173078809 -16200745 + L2 LINE L2 1875 2479 -835 359 232 95 0 chr6 173078861 173078956 -16200598 + L2 LINE L2 3193 3296 -17 2298 101 0 10 chr6 173079212 173079519 -16200035 + AluSx SINE Alu 1 304 -8 2101 132 0 3 chr6 173079542 173079837 -16199717 + AluSx SINE Alu 1 294 -18 974 142 7 0 chr6 173083611 173083759 -16195795 + FRAM SINE Alu 1 146 -30 1079 98 13 13 chr6 173084777 173084930 -16194624 - AluSp/q SINE Alu -5 308 156 32 0 0 0 chr6 173085219 173085251 -16194303 + AT_rich Low_complexity Low_complexity 1 32 0 495 0 0 0 chr6 173085367 173085422 -16194132 + (CA)n Simple_repeat Simple_repeat 2 56 0 219 211 0 42 chr6 173085736 173085807 -16193747 + T-rich Low_complexity Low_complexity 3 70 0 2229 114 3 0 chr6 173086102 173086400 -16193154 - AluSx SINE Alu -13 299 1 634 252 126 17 chr6 173087331 173087545 -16192009 + MIR SINE MIR 1 234 -28 1850 140 44 10 chr6 173087628 173087921 -16191633 - AluSx SINE Alu -7 305 3 206 304 49 10 chr6 173087955 173088057 -16191497 - MIR SINE MIR 0 262 157 516 109 0 143 chr6 173088087 173088206 -16191348 - Tigger7 DNA MER2_type -4 2483 2382 * 2184 142 173 22 chr6 173088177 173088634 -16190920 - Tigger7 DNA MER2_type -1961 526 1 883 186 6 0 chr6 173089294 173089450 -16190104 + FRAM SINE Alu 4 160 -16 1162 180 107 125 chr6 173090465 173090625 -16188929 - L1MC5 LINE L1 -38 7923 7762 2037 109 7 3 chr6 173090625 173090908 -16188646 - AluSg SINE Alu -26 284 1 1162 180 107 125 chr6 173090908 173091380 -16188174 - L1MC5 LINE L1 -199 7762 7302 189 317 79 10 chr6 173093024 173093125 -16186429 + MIR SINE MIR 123 230 -32 732 291 38 22 chr6 173093968 173094036 -16185518 + L1MC4a LINE L1 5545 5610 -2198 2514 132 34 7 chr6 173094036 173094453 -16185101 + MSTA LTR MaLR 1 428 0 732 291 38 22 chr6 173094453 173094703 -16184851 + L1MC4a LINE L1 5610 5868 -1940 2222 108 0 3 chr6 173094837 173095143 -16184411 + AluY SINE Alu 1 305 -6 1222 153 88 85 chr6 173095475 173095609 -16183945 + AluJo SINE Alu 1 133 -179 2364 88 7 0 chr6 173095609 173095914 -16183640 + AluSp SINE Alu 1 307 -6 1222 153 88 85 chr6 173095914 173096074 -16183480 + AluJo SINE Alu 133 296 -16 209 57 29 0 chr6 173097678 173097713 -16181841 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 450 0 0 0 chr6 173098841 173098891 -16180663 + (TA)n Simple_repeat Simple_repeat 1 50 0 1679 131 60 8 chr6 173099012 173099308 -16180246 - AluJo SINE Alu 0 310 1 2484 76 3 0 chr6 173099989 173100290 -16179264 + AluSp SINE Alu 1 302 -11 1044 82 0 0 chr6 173100480 173100615 -16178939 + AluSg/x SINE Alu 175 309 -3 31 26 0 0 chr6 173103450 173103488 -16176066 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr6 173105904 173105940 -16173614 + AT_rich Low_complexity Low_complexity 1 36 0 335 304 59 0 chr6 173107945 173108047 -16171507 + MIR3 SINE MIR 87 194 -14 2172 92 0 43 chr6 173108839 173109164 -16170390 - AluY SINE Alu 0 311 1 1504 179 0 8 chr6 173109666 173109923 -16169631 + AluJb SINE Alu 30 284 -28 2063 103 0 50 chr6 173109987 173110322 -16169232 + AluSx SINE Alu 1 320 0 195 42 0 0 chr6 173110608 173110632 -16168922 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 23 0 0 0 chr6 173111542 173111565 -16167989 + AT_rich Low_complexity Low_complexity 1 23 0 1328 152 53 103 chr6 173112153 173112455 -16167099 - AluJo SINE Alu -25 287 1 22 0 0 0 chr6 173113645 173113667 -16165887 + AT_rich Low_complexity Low_complexity 1 22 0 2485 90 0 0 chr6 173115345 173115655 -16163899 - AluY SINE Alu -1 310 1 29 0 0 0 chr6 173115947 173115976 -16163578 + AT_rich Low_complexity Low_complexity 1 29 0 743 318 87 30 chr6 173118471 173118864 -16160690 - L3 LINE CR1 -118 1459 1045 244 339 100 23 chr6 173119050 173119339 -16160215 - L3 LINE CR1 -785 792 431 726 216 130 0 chr6 173120650 173120835 -16158719 + MER3 DNA MER1_type 1 209 0 943 168 46 10 chr6 173123119 173123315 -16156239 + MER2 DNA MER2_type 9 211 -134 31 0 0 0 chr6 173123523 173123554 -16156000 + AT_rich Low_complexity Low_complexity 1 31 0 2444 88 0 0 chr6 173123835 173124141 -16155413 - AluSg SINE Alu -4 306 1 24 67 0 0 chr6 173124306 173124351 -16155203 + AT_rich Low_complexity Low_complexity 1 45 0 2465 48 0 0 chr6 173125930 173126219 -16153335 + AluY SINE Alu 1 289 -22 26 0 0 0 chr6 173126302 173126328 -16153226 + AT_rich Low_complexity Low_complexity 1 26 0 1428 163 10 54 chr6 173126400 173126695 -16152859 - AluJb SINE Alu -30 282 1 2106 94 3 7 chr6 173126697 173126994 -16152560 - AluSc SINE Alu -13 296 1 2296 105 0 3 chr6 173130290 173130603 -16148951 - AluSq SINE Alu -1 312 1 2173 101 7 0 chr6 173130612 173130908 -16148646 - AluSx SINE Alu -14 298 1 261 274 0 0 chr6 173131164 173131226 -16148328 + (CA)n Simple_repeat Simple_repeat 1 62 0 359 254 148 26 chr6 173132562 173132751 -16146803 + MIR SINE MIR 13 224 -38 2157 101 0 11 chr6 173133955 173134290 -16145264 - AluSx SINE Alu 0 332 1 24 32 0 0 chr6 173134300 173134331 -16145223 + AT_rich Low_complexity Low_complexity 1 31 0 194 278 0 42 chr6 173135256 173135328 -16144226 + MIR SINE MIR 117 185 -77 1445 213 237 14 chr6 173135436 173135939 -16143615 - MLT1E1 LTR MaLR -39 615 1 616 187 30 48 chr6 173137005 173137171 -16142383 + MER3 DNA MER1_type 47 209 0 181 293 0 0 chr6 173137279 173137320 -16142234 + L3 LINE CR1 1529 1569 -8 460 244 91 14 chr6 173138614 173138823 -16140731 - L1MEc LINE L1 -4292 2104 1880 * 1701 192 83 18 chr6 173138811 173139446 -16140108 - L1M4 LINE L1 -394 5849 5171 409 187 64 113 chr6 173139452 173139655 -16139899 - L1M4 LINE L1 -4757 1639 1447 1242 158 64 138 chr6 173139697 173140183 -16139371 - LTR7 LTR ERV1 0 450 1 955 175 19 16 chr6 173140495 173140720 -16138834 + LTR12 LTR ERV1 253 581 -133 2312 248 88 54 chr6 173141014 173142335 -16137219 - L1MEc LINE L1 -4942 1454 61 2238 103 0 0 chr6 173143472 173143763 -16135791 - AluSc SINE Alu -18 291 1 522 88 0 50 chr6 173143773 173143853 -16135701 - AluJ/FRAM SINE Alu -9 303 228 353 157 0 0 chr6 173143862 173143913 -16135641 - Alu SINE Alu -250 51 1 2079 120 0 0 chr6 173144108 173144419 -16135135 + AluSq SINE Alu 1 311 0 266 262 115 41 chr6 173144422 173144544 -16135010 - L2 LINE L2 -21 3251 3121 1819 257 132 56 chr6 173145444 173146863 -16132691 - HAL1 LINE L1 -182 2325 799 1212 115 0 0 chr6 173146863 173147028 -16132526 + AluSg/x SINE Alu 144 308 -4 2088 118 20 0 chr6 173147028 173147325 -16132229 + AluSg SINE Alu 1 303 -7 388 314 55 82 chr6 173147326 173147581 -16131973 - HAL1 LINE L1 -1699 808 561 302 214 100 50 chr6 173147900 173148040 -16131514 - MLT1F LTR MaLR -25 517 371 1767 172 0 22 chr6 173148582 173148901 -16130653 - AluJb SINE Alu 0 312 1 493 268 225 5 chr6 173150366 173150575 -16128979 + MIR SINE MIR 8 262 0 1683 144 37 13 chr6 173150804 173151067 -16128487 + AluJo SINE Alu 1 273 -39 351 0 0 0 chr6 173151067 173151106 -16128448 + (GA)n Simple_repeat Simple_repeat 2 40 0 1683 144 37 13 chr6 173151106 173151141 -16128413 + AluJo SINE Alu 273 306 -6 2415 71 0 0 chr6 173151242 173151537 -16128017 - AluY SINE Alu -16 295 1 615 261 45 11 chr6 173153424 173153600 -16125954 + MIR SINE MIR 11 192 -70 1668 159 3 66 chr6 173154081 173154268 -16125286 - AluJo SINE Alu -12 300 140 2229 100 0 0 chr6 173154268 173154567 -16124987 + AluSc SINE Alu 1 299 -10 1668 159 3 66 chr6 173154567 173154699 -16124855 - AluJo SINE Alu -172 140 1 717 242 39 39 chr6 173154847 173155078 -16124476 - MIR SINE MIR 0 262 32 2396 99 0 3 chr6 173155126 173155438 -16124116 - AluSx SINE Alu 0 312 2 21 0 0 0 chr6 173155594 173155615 -16123939 + AT_rich Low_complexity Low_complexity 1 21 0 2220 83 24 0 chr6 173156953 173157243 -16122311 - AluSx SINE Alu -14 298 2 549 209 0 0 chr6 173159690 173159795 -16119759 - MER53 DNA DNA 0 189 85 203 241 81 23 chr6 173160395 173160482 -16119072 + MIR SINE MIR 110 201 -61 213 316 84 39 chr6 173161410 173161565 -16117989 - MIR SINE MIR -64 198 37 2255 71 0 42 chr6 173162120 173162430 -16117124 - AluY SINE Alu -14 297 1 270 328 139 0 chr6 173163169 173163291 -16116263 + MIR SINE MIR 15 153 -109 222 219 41 68 chr6 173163601 173163674 -16115880 - L2 LINE L2 -9 3304 3234 413 172 16 0 chr6 173163675 173163739 -16115815 - AluJ/FLAM SINE Alu -246 66 2 355 334 88 25 chr6 173163780 173164133 -16115421 - L2 LINE L2 -89 3224 2850 2023 136 17 3 chr6 173164601 173164902 -16114652 - AluSx SINE Alu -7 305 1 494 307 119 56 chr6 173166601 173167178 -16112376 - L2 LINE L2 -2 3270 2638 900 202 0 12 chr6 173167592 173167765 -16111789 - AluJo SINE Alu -10 302 132 813 126 0 0 chr6 173167807 173167918 -16111636 + AluJb SINE Alu 48 158 -154 729 140 47 0 chr6 173167987 173168094 -16111460 - AluJo SINE Alu -187 125 14 1709 97 4 4 chr6 173168775 173169036 -16110518 - AluSg/x SINE Alu 0 346 86 315 0 0 0 chr6 173169040 173169075 -16110479 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2064 113 0 7 chr6 173169079 173169361 -16110193 - AluSg SINE Alu -30 280 1 453 290 43 54 chr6 173170904 173171180 -16108374 + L1ME4a LINE L1 5605 5877 -244 337 167 0 0 chr6 173171635 173171689 -16107865 - AluY SINE Alu 0 301 248 1582 62 0 5 chr6 173171689 173171883 -16107671 - AluY SINE Alu -118 193 1 186 240 0 0 chr6 173171994 173172044 -16107510 + CT-rich Low_complexity Low_complexity 1 50 0 1508 124 39 27 chr6 173172046 173172304 -16107250 - L1MB3 LINE L1 -2 6181 5921 429 320 66 20 chr6 173173613 173173810 -16105744 - MIR SINE MIR -43 219 14 234 0 0 0 chr6 173174186 173174212 -16105342 + (T)n Simple_repeat Simple_repeat 1 26 0 2129 103 7 0 chr6 173174246 173174527 -16105027 - AluSc SINE Alu -26 283 1 236 89 0 22 chr6 173174532 173174577 -16104977 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 291 305 110 18 chr6 173175728 173175892 -16103662 + L1M4c LINE L1 1332 1510 -4874 422 301 49 18 chr6 173176513 173176676 -16102878 + MIR3 SINE MIR 18 185 -23 2306 77 3 0 chr6 173176776 173177086 -16102468 - AluSp SINE Alu 0 311 1 330 225 126 9 chr6 173178229 173178340 -16101214 + LTR67 LTR ERVL 434 557 0 485 297 62 45 chr6 173179109 173179463 -16100091 - L2 LINE L2 -818 2496 2137 505 193 18 18 chr6 173180253 173180362 -16099192 + MER33 DNA MER1_type 34 142 -182 1497 164 18 19 chr6 173180362 173180859 -16098695 + MER6 DNA MER2_type 1 865 0 802 173 64 0 chr6 173180859 173181032 -16098522 + MER33 DNA MER1_type 141 324 0 1734 152 10 30 chr6 173181751 173182048 -16097506 + AluJo SINE Alu 1 291 -21 2233 117 3 0 chr6 173182120 173182420 -16097134 - AluSg SINE Alu -8 302 2 224 318 119 51 chr6 173183040 173183216 -16096338 - L2 LINE L2 -567 2747 2560 291 222 144 11 chr6 173183275 173183365 -16096189 - MIR SINE MIR -70 192 91 25 51 0 0 chr6 173184069 173184108 -16095446 + AT_rich Low_complexity Low_complexity 1 39 0 35 24 0 0 chr6 173184344 173184386 -16095168 + AT_rich Low_complexity Low_complexity 1 42 0 286 205 72 0 chr6 173186038 173186121 -16093433 + (CGGGG)n Simple_repeat Simple_repeat 2 90 0 1676 172 13 32 chr6 173188387 173188701 -16090853 + AluSx SINE Alu 1 308 -4 2163 226 24 13 chr6 173189270 173189826 -16089728 - L1ME1 LINE L1 -114 6052 5549 2044 112 42 0 chr6 173189835 173190120 -16089434 - AluSx SINE Alu -15 297 1 645 240 0 8 chr6 173190593 173190722 -16088832 - FLAM_A SINE Alu -5 128 1 204 40 0 0 chr6 173191961 173191986 -16087568 + (TG)n Simple_repeat Simple_repeat 2 26 0 550 264 246 12 chr6 173193318 173193804 -16085750 - L2 LINE L2 0 3313 2717 1138 264 71 14 chr6 173193943 173194367 -16085187 - MLT1H LTR MaLR -43 506 59 180 328 0 52 chr6 173194495 173194553 -16085001 + L2 LINE L2 1170 1224 -2090 2021 93 17 33 chr6 173195703 173196004 -16083550 - AluSx SINE Alu -16 296 1 462 290 81 19 chr6 173196150 173196460 -16083094 - L1ME4a LINE L1 -257 5864 5536 365 295 50 23 chr6 173196729 173196990 -16082564 - L1MC4a LINE L1 -1872 5936 5669 21 0 0 0 chr6 173199150 173199171 -16080383 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 173202242 173202271 -16077283 + AT_rich Low_complexity Low_complexity 1 29 0 1388 147 132 23 chr6 173202817 173203082 -16076472 - AluJb SINE Alu -18 294 1 2080 13 0 0 chr6 173203226 173203455 -16076099 - AluYb8 SINE Alu -7 311 83 1177 72 0 17 chr6 173203524 173203704 -16075850 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 2243 97 34 0 chr6 173203704 173204145 -16075409 - AluSc SINE Alu 0 451 1 22 35 0 0 chr6 173204877 173204906 -16074648 + AT_rich Low_complexity Low_complexity 1 29 0 472 256 80 21 chr6 173205500 173205667 -16073887 - MIR SINE MIR -71 191 16 2267 102 0 7 chr6 173206567 173206862 -16072692 - AluSx SINE Alu -13 299 7 266 327 144 10 chr6 173207846 173207950 -16071604 - L2 LINE L2 -5 3308 3191 21 36 0 0 chr6 173208165 173208193 -16071361 + AT_rich Low_complexity Low_complexity 1 28 0 251 224 0 60 chr6 173208609 173208620 -16070934 + MER3 DNA MER1_type 39 45 -164 570 259 81 5 chr6 173208620 173208805 -16070749 - MER3 DNA MER1_type 0 209 11 598 116 0 0 chr6 173209377 173209463 -16070091 - AluY SINE Alu -15 296 211 21 36 0 0 chr6 173209648 173209676 -16069878 + AT_rich Low_complexity Low_complexity 1 28 0 249 294 160 8 chr6 173210772 173210891 -16068663 - MIR3 SINE MIR -54 154 18 308 213 12 12 chr6 173210959 173211039 -16068515 - MER116 DNA Mariner 0 80 1 2236 113 3 0 chr6 173212799 173213100 -16066454 + AluSx SINE Alu 1 302 -10 2231 99 0 3 chr6 173214171 173214464 -16065090 + AluSg SINE Alu 1 292 -18 2141 120 0 0 chr6 173216640 173216924 -16062630 - AluSc SINE Alu -24 285 2 207 0 0 0 chr6 173216986 173217009 -16062545 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 1930 128 3 3 chr6 173217011 173217293 -16062261 - AluSx SINE Alu -30 282 1 1117 53 8 0 chr6 173217699 173217831 -16061723 + AluSq/x SINE Alu 1 133 -180 2316 82 7 0 chr6 173217850 173218142 -16061412 + AluSp SINE Alu 1 294 -19 264 326 12 0 chr6 173218381 173218467 -16061087 - MIR3 SINE MIR -13 195 109 2054 171 135 70 chr6 173219526 173220140 -16059414 - MLT1E1 LTR MaLR 0 654 1 479 152 61 0 chr6 173220803 173220902 -16058652 - L1PA13 LINE L1 0 6163 6059 2147 96 21 0 chr6 173220914 173221196 -16058358 - AluY SINE Alu -16 295 8 22 0 0 0 chr6 173221205 173221227 -16058327 + AT_rich Low_complexity Low_complexity 1 22 0 671 219 0 0 chr6 173221381 173221495 -16058059 - FLAM_A SINE Alu -19 114 1 21 0 0 0 chr6 173221551 173221572 -16057982 + AT_rich Low_complexity Low_complexity 1 21 0 2308 107 0 0 chr6 173222174 173222472 -16057082 - AluSx SINE Alu -14 298 1 247 288 0 27 chr6 173223499 173223572 -16055982 - L2 LINE L2 -16 3256 3186 24 0 0 0 chr6 173224263 173224287 -16055267 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr6 173224538 173224564 -16054990 + (T)n Simple_repeat Simple_repeat 1 26 0 259 283 71 10 chr6 173225198 173225297 -16054257 + MIR SINE MIR 138 242 -20 185 365 48 21 chr6 173225295 173225440 -16054114 - MIR SINE MIR -79 183 35 * 620 173 125 0 chr6 173225466 173225634 -16053920 + MER53 DNA DNA 1 189 0 1958 147 10 7 chr6 173226099 173226406 -16053148 - AluJo SINE Alu -4 308 1 28 0 0 26 chr6 173226592 173226614 -16052940 + AT_rich Low_complexity Low_complexity 1 23 -15 2254 111 0 3 chr6 173226614 173226912 -16052642 - AluSq SINE Alu -16 297 1 28 0 0 26 chr6 173226912 173226928 -16052626 + AT_rich Low_complexity Low_complexity 23 38 0 261 296 130 25 chr6 173227186 173227348 -16052206 - MIR SINE MIR -21 241 63 554 248 57 0 chr6 173229757 173229914 -16049640 - L1ME3A LINE L1 -11 6159 5994 348 294 158 18 chr6 173230990 173231211 -16048343 - MIR SINE MIR -8 254 3 21 0 0 0 chr6 173233149 173233170 -16046384 + AT_rich Low_complexity Low_complexity 1 21 0 284 219 17 59 chr6 173233960 173234079 -16045475 + L1ME4a LINE L1 5964 6077 -44 252 215 31 0 chr6 173236242 173236307 -16043247 - HAL1b LINE L1 -50 1298 1232 575 236 22 87 chr6 173236668 173236853 -16042701 - MIR SINE MIR -64 198 18 2153 130 0 3 chr6 173237010 173237311 -16042243 - AluSx SINE Alu -12 300 1 314 336 115 44 chr6 173237465 173237691 -16041863 - MIR SINE MIR -15 247 6 250 266 96 96 chr6 173237717 173237946 -16041608 - MIR SINE MIR -13 249 21 1950 121 7 7 chr6 173238117 173238432 -16041122 - AluSx SINE Alu 0 315 1 611 147 35 0 chr6 173239380 173239496 -16040058 + MLT1F1 LTR MaLR 6 125 -442 2297 167 52 25 chr6 173239498 173240012 -16039542 + L1MD3 LINE L1 7406 7933 -62 701 199 23 0 chr6 173240215 173240346 -16039208 - FAM SINE Alu -3 46 1 470 196 76 0 chr6 173246202 173246294 -16033260 - MER58B DNA MER1_type 0 341 243 817 141 11 85 chr6 173246445 173246622 -16032932 - FRAM SINE Alu -13 163 1 198 284 83 28 chr6 173247482 173247591 -16031963 + MIR SINE MIR 66 180 -82 2223 98 0 30 chr6 173247759 173248064 -16031490 + AluSq SINE Alu 1 296 -17 463 286 32 0 chr6 173249960 173250086 -16029468 + MER94 DNA DNA 3 132 -2 521 278 148 0 chr6 173251293 173251455 -16028099 + MIR SINE MIR 75 260 -2 222 232 266 8 chr6 173252033 173252156 -16027398 + MER91 DNA MER1_type 1 168 -22 21 0 0 0 chr6 173254055 173254076 -16025478 + AT_rich Low_complexity Low_complexity 1 21 0 864 279 104 45 chr6 173257775 173258260 -16021294 - L2 LINE L2 -2 3311 2755 2155 136 0 0 chr6 173258260 173258562 -16020992 - AluSx SINE Alu -10 302 1 864 279 104 45 chr6 173258562 173258782 -16020772 - L2 LINE L2 -558 2755 2549 376 287 124 20 chr6 173258782 173258984 -16020570 - L2 LINE L2 -868 2446 2224 456 261 17 8 chr6 173259008 173259127 -16020427 - MER5A DNA MER1_type -53 136 17 430 272 105 6 chr6 173259150 173259312 -16020242 - MER5B DNA MER1_type 0 178 1 327 312 7 32 chr6 173259958 173260112 -16019442 + L2 LINE L2 2946 3095 -177 236 191 59 44 chr6 173260154 173260222 -16019332 + L2 LINE L2 3244 3312 -1 1895 139 56 0 chr6 173262868 173263155 -16016399 - AluSx SINE Alu -9 303 1 2259 85 54 7 chr6 173266509 173266804 -16012750 - AluSg SINE Alu -1 309 1 1072 226 52 0 chr6 173266845 173267057 -16012497 + MER58A DNA MER1_type 1 223 -1 361 278 56 16 chr6 173267164 173267290 -16012264 - L2 LINE L2 -9 3304 3174 2540 279 128 20 chr6 173267629 173267739 -16011815 + L1MC4a LINE L1 3730 3827 -2729 2420 86 0 3 chr6 173267739 173268042 -16011512 - AluSg SINE Alu -8 302 1 2540 279 128 20 chr6 173268042 173269505 -16010049 + L1MC4a LINE L1 3827 5549 -1007 2393 86 0 7 chr6 173269505 173269807 -16009747 - AluSg SINE Alu -10 300 1 2540 279 128 20 chr6 173269807 173270099 -16009455 + L1MC4a LINE L1 5549 5808 -748 1229 202 198 45 chr6 173270150 173270695 -16008859 - MLT1E1 LTR MaLR -31 623 1 1311 222 187 14 chr6 173270716 173271393 -16008161 + L1MC4a LINE L1 6225 7807 0 197 233 17 33 chr6 173273687 173273747 -16005807 - L2 LINE L2 -76 3237 3179 953 223 16 5 chr6 173275743 173275927 -16003627 - MER5A DNA MER1_type -3 186 1 762 138 0 26 chr6 173275954 173276070 -16003484 + AluJb SINE Alu 183 295 -17 2343 100 3 0 chr6 173276827 173277128 -16002426 - AluSp SINE Alu -11 302 1 2041 159 100 18 chr6 173277249 173277640 -16001914 - MSTA LTR MaLR -5 423 1 2386 90 3 3 chr6 173278149 173278459 -16001095 + AluSx SINE Alu 1 310 -2 2418 80 0 3 chr6 173279322 173279633 -15999921 - AluY SINE Alu 0 311 2 215 355 143 24 chr6 173282927 173283389 -15996165 + L2 LINE L2 2379 2895 -419 204 224 0 20 chr6 173283514 173283563 -15995991 + L2 LINE L2 3225 3272 0 309 274 0 14 chr6 173283787 173283860 -15995694 + MIR SINE MIR 26 97 -111 2241 101 17 0 chr6 173285537 173285835 -15993719 - AluSx SINE Alu -9 303 1 208 277 0 0 chr6 173285969 173286016 -15993538 + L2 LINE L2 3185 3231 -41 2281 91 7 10 chr6 173286592 173286889 -15992665 - AluSx SINE Alu -16 296 1 186 297 165 11 chr6 173286953 173287044 -15992510 - L2 LINE L2 -1 3312 3208 222 62 0 0 chr6 173287084 173287116 -15992438 + (TCTCTG)n Simple_repeat Simple_repeat 3 34 0 25 0 0 0 chr6 173287131 173287156 -15992398 + GC_rich Low_complexity Low_complexity 1 25 0 604 295 84 0 chr6 173287649 173287876 -15991678 - MIR SINE MIR 0 262 17 313 227 6 129 chr6 173288548 173288711 -15990843 - MER112 DNA MER1_type -111 149 7 469 274 51 103 chr6 173289477 173289711 -15989843 + L2 LINE L2 2995 3216 -56 199 244 0 0 chr6 173289841 173289886 -15989668 + L2 LINE L2 3175 3219 -94 263 269 244 0 chr6 173291080 173291240 -15988314 - MIR3 SINE MIR -7 201 3 2263 114 0 3 chr6 173291282 173291413 -15988141 + AluSg SINE Alu 1 131 -179 2291 72 0 42 chr6 173291413 173291720 -15987834 + AluY SINE Alu 17 310 -1 2263 114 0 3 chr6 173291720 173291886 -15987668 + AluSg SINE Alu 131 297 -13 503 159 124 0 chr6 173291894 173292007 -15987547 - MIR SINE MIR -15 247 121 811 181 0 0 chr6 173292312 173292439 -15987115 + FLAM_A SINE Alu 3 129 -4 229 267 99 10 chr6 173292630 173292731 -15986823 + L1M LINE L1 5313 5422 -2386 254 208 42 0 chr6 173293118 173293166 -15986388 - MIR SINE MIR -83 125 76 184 300 0 0 chr6 173293190 173293230 -15986324 + L2 LINE L2 3125 3164 -108 2187 131 0 0 chr6 173293795 173294092 -15985462 + AluSx SINE Alu 2 298 -14 317 302 93 39 chr6 173295084 173295213 -15984341 - L2 LINE L2 0 3272 3137 195 320 61 69 chr6 173295374 173295591 -15983963 - L2 LINE L2 -344 2970 2753 2081 118 0 0 chr6 173295591 173295896 -15983658 - AluSg SINE Alu 0 305 1 195 320 61 69 chr6 173295896 173296298 -15983256 - L2 LINE L2 -561 2753 2355 228 263 18 0 chr6 173298623 173298680 -15980874 - MER49 LTR ERV1 -553 370 313 188 362 60 9 chr6 173299091 173299207 -15980347 + MIR3 SINE MIR 76 197 -11 760 236 105 22 chr6 173299947 173300176 -15979378 - MIR SINE MIR 0 262 15 322 287 19 46 chr6 173300195 173300303 -15979251 - MIR SINE MIR -114 148 44 2160 133 0 0 chr6 173300487 173300795 -15978759 + AluSx SINE Alu 1 308 -4 1733 163 0 11 chr6 173300814 173301110 -15978444 + AluJb SINE Alu 12 304 0 438 20 0 0 chr6 173302108 173302159 -15977395 + (TTGG)n Simple_repeat Simple_repeat 1 51 0 1791 148 4 11 chr6 173302159 173302430 -15977124 - AluJb SINE Alu -28 284 16 21 36 0 0 chr6 173303582 173303610 -15975944 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 27 chr6 173303618 173303635 -15975919 + AT_rich Low_complexity Low_complexity 1 17 -19 2140 122 3 7 chr6 173303635 173303931 -15975623 - AluSq SINE Alu -18 295 1 26 0 0 27 chr6 173303931 173303950 -15975604 + AT_rich Low_complexity Low_complexity 17 36 0 2193 134 0 0 chr6 173304095 173304394 -15975160 + AluSx SINE Alu 1 299 -13 263 310 10 20 chr6 173304467 173304567 -15974987 - MIR SINE MIR -79 183 85 500 260 144 0 chr6 173304775 173304956 -15974598 + L2 LINE L2 3107 3313 0 1080 219 132 29 chr6 173305559 173306236 -15973318 + L1ME1 LINE L1 5345 6103 -63 1704 192 0 0 chr6 173306251 173306574 -15972980 + AluSx SINE Alu 1 323 0 341 280 121 8 chr6 173307500 173307632 -15971922 - MIR SINE MIR -105 157 11 21 0 0 0 chr6 173308776 173308797 -15970757 + AT_rich Low_complexity Low_complexity 1 21 0 809 208 104 10 chr6 173309151 173309353 -15970201 + MER58A DNA MER1_type 1 221 -3 601 262 49 53 chr6 173309600 173309863 -15969691 + MIR SINE MIR 1 262 0 327 289 28 21 chr6 173310156 173310298 -15969256 - MIR SINE MIR -55 207 65 201 241 0 0 chr6 173310518 173310572 -15968982 + (CA)n Simple_repeat Simple_repeat 1 54 0 235 325 86 8 chr6 173310574 173310691 -15968863 + L2 LINE L2 3146 3271 -1 260 339 24 16 chr6 173310858 173310985 -15968569 + MIR SINE MIR 105 232 -30 458 184 0 53 chr6 173311097 173311841 -15967713 + C-rich Low_complexity Low_complexity 1 704 0 186 43 0 0 chr6 173311951 173311974 -15967580 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr6 173313548 173313577 -15965977 + AT_rich Low_complexity Low_complexity 1 29 0 222 118 0 0 chr6 173313714 173313748 -15965806 + (TG)n Simple_repeat Simple_repeat 2 35 0 1569 143 0 17 chr6 173317610 173317847 -15961707 - AluJo SINE Alu -79 233 1 200 367 10 10 chr6 173318306 173318404 -15961150 - MIR3 SINE MIR -1 207 110 2362 83 3 13 chr6 173318476 173318788 -15960766 - AluSc SINE Alu 0 309 1 243 0 0 0 chr6 173318808 173318835 -15960719 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1545 197 7 16 chr6 173321648 173321958 -15957596 + AluJo SINE Alu 1 307 -5 535 284 129 35 chr6 173324188 173324590 -15954964 + L2 LINE L2 2341 2780 -534 207 0 0 0 chr6 173325339 173325362 -15954192 + (TA)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr6 173325394 173325417 -15954137 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 173326111 173326132 -15953422 + AT_rich Low_complexity Low_complexity 1 21 0 435 285 108 11 chr6 173327815 173328001 -15951553 + MIR SINE MIR 46 249 -13 1775 158 34 10 chr6 173329482 173329780 -15949774 + AluJb SINE Alu 1 305 -7 21 36 0 0 chr6 173331270 173331298 -15948256 + AT_rich Low_complexity Low_complexity 1 28 0 269 238 198 24 chr6 173333963 173334089 -15945465 - MER5A DNA MER1_type -35 154 7 22 0 0 0 chr6 173337346 173337368 -15942186 + AT_rich Low_complexity Low_complexity 1 22 0 239 0 32 0 chr6 173338626 173338657 -15940897 + (TA)n Simple_repeat Simple_repeat 1 32 0 198 91 0 0 chr6 173338927 173338960 -15940594 + (T)n Simple_repeat Simple_repeat 1 33 0 2430 76 0 0 chr6 173340471 173340761 -15938793 + AluSx SINE Alu 1 290 -22 236 190 17 0 chr6 173343356 173343414 -15936140 - L1MCa LINE L1 -4362 2064 2006 195 69 0 0 chr6 173344276 173344305 -15935249 + (A)n Simple_repeat Simple_repeat 1 29 0 850 208 83 14 chr6 173544520 173544736 -15734818 + LTR45B LTR ERV1 181 411 -78 2199 96 0 3 chr6 173544746 173545048 -15734506 + AluSx SINE Alu 1 301 -11 762 150 50 36 chr6 173545652 173545792 -15733762 + LTR45B LTR ERV1 348 489 0 236 279 105 23 chr6 173546213 173546299 -15733255 + MIR SINE MIR 59 151 -57 380 240 91 108 chr6 173546325 173546621 -15732933 - L2 LINE L2 -5 3267 2977 1731 160 104 24 chr6 173547942 173548280 -15731274 - MLT1A1 LTR MaLR 0 365 1 33 56 0 0 chr6 173549177 173549231 -15730323 + AT_rich Low_complexity Low_complexity 1 54 0 248 167 0 19 chr6 173549280 173549334 -15730220 + CT-rich Low_complexity Low_complexity 72 124 0 858 151 6 11 chr6 173549349 173549528 -15730026 + CT-rich Low_complexity Low_complexity 3 180 0 1668 120 74 21 chr6 173549727 173550010 -15729544 - AluSx SINE Alu -14 298 1 1830 147 3 7 chr6 173550292 173550584 -15728970 - AluJb SINE Alu -21 291 1 1110 143 12 14 chr6 173553632 173553883 -15725671 + AluSq SINE Alu 1 298 -15 201 196 20 20 chr6 173554211 173554262 -15725292 + L2 LINE L2 3213 3263 -9 1981 126 28 36 chr6 173554527 173554884 -15724670 - THE1C LTR MaLR -21 354 1 5942 109 14 23 chr6 173554885 173555583 -15723971 + L1PA15 LINE L1 4793 5486 -679 2129 121 0 3 chr6 173555583 173555897 -15723657 + AluSq SINE Alu 1 313 0 5942 109 14 23 chr6 173555897 173556568 -15722986 + L1PA15 LINE L1 5486 6161 -4 662 329 68 59 chr6 173557574 173558055 -15721499 - L2 LINE L2 -55 3217 2734 2235 155 39 41 chr6 173558055 173558520 -15721034 + MLT2C2 LTR ERVL 1 464 0 662 329 68 59 chr6 173558520 173558823 -15720731 - L2 LINE L2 -538 2734 2435 632 171 17 0 chr6 173559004 173559121 -15720433 - AluSg/x SINE Alu -23 289 171 343 115 0 46 chr6 173559222 173559309 -15720245 + (TCC)n Simple_repeat Simple_repeat 1 83 0 405 297 100 63 chr6 173559540 173560130 -15719424 + L2 LINE L2 2254 2865 -449 1551 240 56 33 chr6 173560824 173561274 -15718280 - MLT1C LTR MaLR 0 467 8 186 338 200 9 chr6 173561297 173561522 -15718032 + L2 LINE L2 2438 2705 -609 2093 107 3 0 chr6 173561533 173561831 -15717723 + AluSx SINE Alu 1 299 -13 202 344 128 37 chr6 173561972 173562190 -15717364 - MIR SINE MIR -8 254 17 2299 55 0 45 chr6 173562719 173563029 -15716525 - AluY SINE Alu -15 296 1 588 241 127 0 chr6 173563451 173563609 -15715945 - MER45A DNA AcHobo 0 178 1 244 324 57 50 chr6 173563830 173564129 -15715425 + L2 LINE L2 2812 3112 -160 183 80 0 0 chr6 173564308 173564333 -15715221 + (CTG)n Simple_repeat Simple_repeat 3 27 0 2112 95 0 0 chr6 173564448 173564769 -15714785 - AluSx SINE Alu 0 321 1 504 250 18 0 chr6 173565423 173565535 -15714019 + MER81 DNA DNA 1 114 0 336 324 86 0 chr6 173566075 173566180 -15713374 - MIR SINE MIR -53 209 96 2351 58 3 3 chr6 173567873 173568182 -15711372 + AluY SINE Alu 1 309 -2 573 93 0 0 chr6 173568456 173568531 -15711023 - MADE1 DNA Mariner 0 80 6 1771 146 48 19 chr6 173570467 173570783 -15708771 + MER34B LTR ERV1 3 327 -238 25 0 0 0 chr6 173570783 173570808 -15708746 + AT_rich Low_complexity Low_complexity 1 25 0 1219 137 7 105 chr6 173570875 173571152 -15708402 + MER34B LTR ERV1 316 565 0 322 289 82 37 chr6 173571799 173571934 -15707620 - MIR SINE MIR -102 160 20 479 163 41 0 chr6 173572342 173572440 -15707114 - MER97c DNA MER1_type? -929 161 60 1968 170 29 71 chr6 173573142 173573359 -15706195 + MER63B DNA MER1_type 2 227 -835 1897 115 3 21 chr6 173573359 173573684 -15705870 + AluSc SINE Alu 3 322 0 1968 170 29 71 chr6 173573684 173573808 -15705746 + MER63B DNA MER1_type 227 325 -737 1781 163 13 0 chr6 173573808 173574115 -15705439 - AluJb SINE Alu -1 311 1 1968 170 29 71 chr6 173574115 173574221 -15705333 + MER63B DNA MER1_type 325 434 -2 291 258 0 0 chr6 173574334 173574396 -15705158 + L2 LINE L2 1901 1962 -1352 276 375 0 0 chr6 173574549 173574677 -15704877 + L2 LINE L2 2221 2348 -966 292 301 97 0 chr6 173574719 173574832 -15704722 - L2 LINE L2 -3 3310 3187 205 386 52 36 chr6 173574833 173575279 -15704275 + L2 LINE L2 2413 2865 -449 1256 163 16 25 chr6 173575281 173575573 -15703981 - AluJo SINE Alu 0 356 67 251 292 124 18 chr6 173575769 173575882 -15703672 + MER91B DNA MER1_type 1 125 -65 413 296 169 14 chr6 173575917 173576130 -15703424 + L2 LINE L2 3025 3270 -2 1832 140 3 23 chr6 173577097 173577397 -15702157 - AluJb SINE Alu -18 294 1 234 83 0 104 chr6 173577539 173577587 -15701967 - LTR8 LTR ERV1 -171 520 478 4490 63 5 2 chr6 173578217 173578769 -15700785 + MER41A LTR ERV1 1 554 0 901 251 127 64 chr6 173579029 173579105 -15700449 + MLT1L LTR MaLR 43 113 -502 5298 73 18 4 chr6 173579105 173579787 -15699767 + LTR8 LTR ERV1 1 691 0 901 251 127 64 chr6 173579787 173580181 -15699373 + MLT1L LTR MaLR 113 543 -72 5073 156 41 28 chr6 173580310 173580346 -15699208 - L1MB1 LINE L1 -5 6163 6129 6033 125 14 13 chr6 173580346 173581314 -15698240 + LTR5 LTR ERVK 1 969 0 2001 104 0 0 chr6 173581324 173581592 -15697962 - AluSx SINE Alu -17 295 28 5073 156 41 28 chr6 173581592 173582117 -15697437 - L1MB1 LINE L1 -47 6121 5604 2564 85 11 8 chr6 173582117 173582471 -15697083 + THE1A LTR MaLR 1 355 0 5073 156 41 28 chr6 173582471 173583671 -15695883 - L1MB1 LINE L1 -564 5604 4358 2145 99 27 0 chr6 173583716 173584009 -15695545 + AluSx SINE Alu 1 301 -11 698 292 46 0 chr6 173584041 173584260 -15695294 - MIR SINE MIR 0 262 34 203 297 72 54 chr6 173584457 173584568 -15694986 + MIR SINE MIR 100 212 -50 2106 123 3 0 chr6 173584777 173585078 -15694476 - AluSg SINE Alu -8 302 1 878 261 46 4 chr6 173585463 173585701 -15693853 + MIR SINE MIR 15 262 0 2214 146 9 3 chr6 173586344 173586679 -15692875 + MER1B DNA MER1_type 1 337 0 244 200 0 0 chr6 173586734 173586779 -15692775 - Alu SINE Alu -6 295 251 424 305 31 16 chr6 173588290 173588418 -15691136 - MIR SINE MIR -113 149 20 2233 100 0 6 chr6 173588485 173588796 -15690758 + AluSc SINE Alu 1 309 0 219 193 53 35 chr6 173589239 173589296 -15690258 + MIR SINE MIR 18 75 -133 2068 128 0 7 chr6 173589490 173589795 -15689759 - AluSx SINE Alu -9 303 1 863 222 11 5 chr6 173589836 173590021 -15689533 + L1M4 LINE L1 16 201 -6341 183 42 0 0 chr6 173590088 173590112 -15689442 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 329 242 18 16 chr6 173590914 173590999 -15688555 + MER5A DNA MER1_type 92 189 0 213 320 148 8 chr6 173591036 173591164 -15688390 - L3b LINE CR1 -242 1341 1196 421 272 51 32 chr6 173591988 173592146 -15687408 + MER5A DNA MER1_type 1 161 -28 1955 147 3 3 chr6 173592151 173592463 -15687091 - AluSx SINE Alu 0 312 1 188 283 22 0 chr6 173592463 173592509 -15687045 + MER5A DNA MER1_type 143 189 0 476 302 121 7 chr6 173592555 173592704 -15686850 - MIR SINE MIR -77 185 20 371 280 91 16 chr6 173593017 173593203 -15686351 + MLT1L LTR MaLR 89 288 -327 238 253 89 13 chr6 173593246 173593325 -15686229 + MER91C DNA MER1_type 38 122 -18 198 0 0 0 chr6 173593412 173593434 -15686120 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7314 49 3 0 chr6 173593434 173594902 -15684652 - L1PA7 LINE L1 -18 6136 4668 17480 78 10 2 chr6 173594895 173597389 -15682165 + L1PA7 LINE L1 2156 4668 -1478 1994 125 27 3 chr6 173597547 173597842 -15681712 - AluSx SINE Alu -10 302 1 1037 105 8 0 chr6 173597986 173598119 -15681435 - AluSq/x SINE Alu -178 134 1 1592 139 81 11 chr6 173598265 173598538 -15681016 - AluSx SINE Alu -20 292 1 618 261 96 64 chr6 173598680 173599120 -15680434 - MER34B LTR ERV1 0 565 112 342 0 0 0 chr6 173599271 173599309 -15680245 + (CA)n Simple_repeat Simple_repeat 1 38 0 219 212 0 30 chr6 173599357 173599423 -15680131 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 24 32 0 0 chr6 173599452 173599483 -15680071 + AT_rich Low_complexity Low_complexity 1 31 0 2376 92 0 3 chr6 173600027 173600330 -15679224 - AluY SINE Alu -9 302 1 2462 165 10 57 chr6 173600476 173600684 -15678870 + L1MA9 LINE L1 5829 6045 -267 673 219 0 0 chr6 173600684 173600828 -15678726 + FLAM_C SINE Alu 5 148 0 2462 165 10 57 chr6 173600828 173601126 -15678428 + L1MA9 LINE L1 6045 6312 0 477 147 0 0 chr6 173602119 173602214 -15677340 + (TTCC)n Simple_repeat Simple_repeat 2 96 0 2025 129 7 4 chr6 173602237 173602545 -15677009 + AluSg SINE Alu 1 309 0 2216 123 3 0 chr6 173602589 173602889 -15676665 + AluSx SINE Alu 1 301 -11 2440 81 7 7 chr6 173602976 173603286 -15676268 - AluSx SINE Alu -2 310 1 29 0 0 0 chr6 173603295 173603324 -15676230 + AT_rich Low_complexity Low_complexity 1 29 0 1219 214 38 41 chr6 173603324 173603669 -15675885 - L1MB8 LINE L1 -6 6172 5829 582 128 35 0 chr6 173603769 173603855 -15675699 - AluS SINE Alu -222 90 2 2281 91 6 25 chr6 173604392 173604710 -15674844 - AluSx SINE Alu 0 312 1 861 219 29 26 chr6 173606113 173606383 -15673171 + PABL_B LTR ERV1 386 667 0 2255 231 69 16 chr6 173606726 173607349 -15672205 + L1MEc LINE L1 518 1173 -5223 783 279 70 64 chr6 173607606 173608046 -15671508 - LTR1B LTR ERV1 -328 498 56 779 303 48 27 chr6 173608073 173608548 -15671006 + L1MEc LINE L1 1212 1696 -4700 401 228 11 11 chr6 173608557 173608649 -15670905 + MER2 DNA MER2_type 6 97 -248 * 2916 129 30 14 chr6 173608647 173609143 -15670411 - LTR24B LTR ERV1 -8 568 65 454 118 0 0 chr6 173609131 173609199 -15670355 - LTR23 LTR ERV1 -358 79 12 * 1304 250 105 13 chr6 173609225 173609673 -15669881 + MER21B LTR ERV1 324 812 -51 207 0 0 0 chr6 173610440 173610463 -15669091 + (TG)n Simple_repeat Simple_repeat 2 24 0 2354 99 0 0 chr6 173610515 173610807 -15668747 - AluSx SINE Alu -20 292 1 241 219 68 27 chr6 173611656 173611729 -15667825 - L2 LINE L2 -24 3289 3214 298 308 60 8 chr6 173611952 173612069 -15667485 - L2 LINE L2 -537 2777 2655 531 203 22 80 chr6 173612168 173612233 -15667321 - MER94 DNA DNA 0 134 80 2056 145 0 0 chr6 173612233 173612529 -15667025 - AluSx SINE Alu -16 296 1 531 203 22 80 chr6 173612529 173612601 -15666953 - MER94 DNA DNA -54 80 5 524 167 0 0 chr6 173612614 173612698 -15666856 - FLAM_A SINE Alu -13 129 46 2095 108 3 57 chr6 173613462 173613777 -15665777 - AluSx SINE Alu -14 298 1 3306 160 58 8 chr6 173615099 173615717 -15663837 + L1PB4 LINE L1 5505 6153 -3 210 299 60 60 chr6 173615857 173615991 -15663563 - L2 LINE L2 -9 3304 3171 1601 156 76 3 chr6 173616177 173616465 -15663089 + AluJo SINE Alu 1 309 -3 236 307 216 6 chr6 173617029 173617205 -15662349 + MIR SINE MIR 42 254 -8 1809 139 9 86 chr6 173617925 173618263 -15661291 - AluJb SINE Alu 0 312 1 2222 123 3 3 chr6 173618457 173618767 -15660787 - AluSx SINE Alu -2 310 1 396 281 119 12 chr6 173618825 173618985 -15660569 - MER117 DNA MER1_type -2 195 19 276 276 144 44 chr6 173620604 173620785 -15658769 - MIR SINE MIR 0 262 64 412 66 49 0 chr6 173620791 173620852 -15658702 + U2 snRNA snRNA 4 67 -121 2481 183 22 65 chr6 173620863 173621463 -15658091 - LTR9 LTR ERV1 -38 574 1 623 169 25 0 chr6 173621463 173621575 -15657979 + U2 snRNA snRNA 63 177 -11 188 222 22 0 chr6 173621883 173621928 -15657626 - MIR SINE MIR -64 144 99 340 376 0 8 chr6 173622271 173622388 -15657166 - MIR SINE MIR -130 132 17 465 174 110 9 chr6 173622652 173622761 -15656793 + MLT1B LTR MaLR 5 124 -266 2148 116 0 7 chr6 173622761 173623045 -15656509 + AluSx SINE Alu 1 282 -30 288 0 0 0 chr6 173623058 173623090 -15656464 + (CA)n Simple_repeat Simple_repeat 1 32 0 4407 72 2 0 chr6 173623245 173623798 -15655756 - MER41A LTR ERV1 0 554 1 1311 194 68 63 chr6 173623818 173623987 -15655567 + MLT1B LTR MaLR 5 172 -218 2332 117 0 0 chr6 173623987 173624287 -15655267 + AluSc SINE Alu 1 300 -9 1311 194 68 63 chr6 173624287 173624309 -15655245 + MLT1B LTR MaLR 172 192 -198 219 36 0 0 chr6 173624309 173624337 -15655217 + (TC)n Simple_repeat Simple_repeat 2 29 0 1311 194 68 63 chr6 173624337 173624526 -15655028 + MLT1B LTR MaLR 192 388 -2 197 314 93 12 chr6 173624564 173624650 -15654904 + MIR SINE MIR 2 94 -168 4341 139 16 32 chr6 173624765 173625504 -15654050 + LTR8A LTR ERV1 1 727 0 2169 213 93 57 chr6 173625635 173626335 -15653219 + MER50 LTR ERV1 10 734 0 1495 107 18 5 chr6 173626662 173626886 -15652668 + MER4A LTR ERV1 438 664 0 2537 73 8 19 chr6 173626945 173627442 -15652112 + LTR7 LTR ERV1 1 448 -2 16399 105 22 23 chr6 173627444 173630544 -15649010 + HERVH LTR ERV1 1 2987 -4726 826 155 20 0 chr6 173630538 173630686 -15648868 + HERVH LTR ERV1 3140 3290 -4423 * 3410 91 4 4 chr6 173630685 173631178 -15648376 + HERVH LTR ERV1 3500 3992 -3721 * 4343 137 1 3 chr6 173631170 173631843 -15647711 + HERVH LTR ERV1 4478 5149 -2564 1312 134 18 5 chr6 173631844 173632061 -15647493 + HERVH LTR ERV1 5600 5819 -1894 * 2475 88 45 3 chr6 173632059 173632435 -15647119 + HERVH LTR ERV1 7322 7713 0 3636 53 0 7 chr6 173632435 173632886 -15646668 + LTR7 LTR ERV1 1 448 -2 1277 236 85 8 chr6 173633305 173633703 -15645851 + MER74A LTR ERVL 25 453 -105 228 49 122 0 chr6 173633704 173633745 -15645809 + MER4D LTR ERV1 1 46 -826 899 124 25 0 chr6 173633745 173633866 -15645688 - FLAM_C SINE Alu -19 124 1 3105 128 29 75 chr6 173633866 173634153 -15645401 + MER4D LTR ERV1 320 619 -284 3547 146 20 88 chr6 173634153 173634894 -15644660 + LTR8 LTR ERV1 1 691 0 3105 128 29 75 chr6 173634894 173635163 -15644391 + MER4D LTR ERV1 619 848 -55 2429 86 0 0 chr6 173635163 173635465 -15644089 - AluY SINE Alu -9 302 1 3105 128 29 75 chr6 173635465 173635519 -15644035 + MER4D LTR ERV1 848 903 0 236 229 29 14 chr6 173635529 173635599 -15643955 + MER74A LTR ERVL 460 530 -28 350 282 39 119 chr6 173635993 173636330 -15643224 - L2 LINE L2 0 3272 2963 530 243 47 85 chr6 173636396 173636784 -15642770 - MLT1H1 LTR MaLR 0 555 160 813 216 68 25 chr6 173636784 173637020 -15642534 - PABL_B LTR ERV1 0 667 422 2202 122 0 0 chr6 173637052 173637355 -15642199 - AluSx SINE Alu -9 303 1 274 307 50 94 chr6 173637382 173637659 -15641895 - PABL_B LTR ERV1 -401 266 2 265 189 19 0 chr6 173637659 173637705 -15641849 - MLT1H1 LTR MaLR -389 160 114 917 301 58 44 chr6 173638093 173638612 -15640942 + MLT1K LTR MaLR 59 584 -4 5310 139 36 3 chr6 173639683 173640543 -15639011 - L1MC1 LINE L1 0 6333 5446 256 308 167 26 chr6 173640664 173640820 -15638734 - L2 LINE L2 0 3272 3095 209 242 22 56 chr6 173641155 173641333 -15638221 + GA-rich Low_complexity Low_complexity 1 172 0 284 163 0 124 chr6 173641572 173641774 -15637780 + GA-rich Low_complexity Low_complexity 4 180 0 1810 160 28 0 chr6 173642040 173642322 -15637232 + AluJb SINE Alu 1 290 -22 198 0 0 0 chr6 173642666 173642688 -15636866 + (T)n Simple_repeat Simple_repeat 1 22 0 529 305 42 38 chr6 173642975 173643211 -15636343 - L2 LINE L2 -1 3312 3076 815 206 33 5 chr6 173645077 173645261 -15634293 + MER5A DNA MER1_type 1 189 0 378 171 0 0 chr6 173645871 173645941 -15633613 + CT-rich Low_complexity Low_complexity 3 72 0 1930 93 0 48 chr6 173645943 173646116 -15633438 - AluSc SINE Alu -16 293 136 2639 52 0 7 chr6 173646116 173646426 -15633128 - AluY SINE Alu -3 308 1 1930 93 0 48 chr6 173646426 173646522 -15633032 - AluSc SINE Alu -173 136 37 1468 275 83 13 chr6 173647081 173647608 -15631946 - MER77 LTR ERV1 -3 602 58 598 277 138 3 chr6 173647640 173647922 -15631632 + MER5C DNA MER1_type 5 324 0 223 359 39 0 chr6 173647922 173648049 -15631505 + MIR3 SINE MIR 47 178 -30 923 135 0 0 chr6 173649657 173649790 -15629764 + AluSp/q SINE Alu 162 294 -19 2255 115 3 19 chr6 173649841 173650153 -15629401 + AluSx SINE Alu 1 307 -5 25 0 0 0 chr6 173651055 173651080 -15628474 + AT_rich Low_complexity Low_complexity 1 25 0 2294 121 0 3 chr6 173651137 173651443 -15628111 - AluSx SINE Alu -7 305 1 612 145 51 0 chr6 173652051 173652168 -15627386 + L1MB7 LINE L1 6043 6165 -19 216 327 30 50 chr6 173652899 173653000 -15626554 - MIR SINE MIR -68 140 42 272 280 58 78 chr6 173654324 173654567 -15624987 + MLT1J LTR MaLR 28 265 -246 506 258 46 71 chr6 173654695 173654935 -15624619 + MLT1J LTR MaLR 260 493 -18 21 0 0 0 chr6 173655520 173655541 -15624013 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 173656126 173656147 -15623407 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr6 173659843 173659864 -15619690 + AT_rich Low_complexity Low_complexity 1 21 0 221 268 0 37 chr6 173660694 173660776 -15618778 + G-rich Low_complexity Low_complexity 3 81 0 2128 217 38 8 chr6 173661045 173661557 -15617997 + L1MB3 LINE L1 5661 6183 0 291 346 11 28 chr6 173662009 173662139 -15617415 - MIR SINE MIR -27 181 47 201 120 200 0 chr6 173662502 173662552 -15617002 + L3b LINE CR1 1206 1265 -318 2014 141 0 3 chr6 173662793 173663096 -15616458 + AluSx SINE Alu 1 302 0 451 231 154 0 chr6 173664322 173664465 -15615089 + MER69A DNA AcHobo 2 166 -11 2217 109 0 50 chr6 173664664 173664986 -15614568 - AluSx SINE Alu -6 306 1 281 252 18 45 chr6 173665849 173665960 -15613594 + CT-rich Low_complexity Low_complexity 2 109 0 276 132 0 19 chr6 173666271 173666324 -15613230 - MER116 DNA Mariner 0 80 29 517 322 53 19 chr6 173668214 173668478 -15611076 + L1MEc LINE L1 843 1115 -6023 228 219 98 24 chr6 173668715 173668797 -15610757 + L1MEc LINE L1 1337 1424 -5714 649 249 33 5 chr6 173668938 173669261 -15610293 + L1MEc LINE L1 1331 1914 -5046 412 279 178 20 chr6 173669381 173669578 -15609976 + MIR SINE MIR 4 231 -31 276 308 51 0 chr6 173670039 173670156 -15609398 - L3 LINE CR1 -180 1397 1275 2229 124 0 0 chr6 173670906 173671212 -15608342 + AluSx SINE Alu 1 306 -6 1238 126 6 0 chr6 173671392 173671566 -15607988 + AluSg/x SINE Alu 126 300 -10 468 267 21 59 chr6 173671618 173671805 -15607749 - MIR SINE MIR -70 192 13 233 259 129 12 chr6 173672351 173672436 -15607118 + L2 LINE L2 3019 3113 -159 237 302 31 10 chr6 173672629 173672725 -15606829 - MER5B DNA MER1_type 0 178 81 2411 106 0 3 chr6 173672895 173673207 -15606347 + AluSx SINE Alu 1 311 -1 423 258 121 0 chr6 173673229 173673353 -15606201 + MIR SINE MIR 67 205 -57 1804 230 29 12 chr6 173674265 173674744 -15604810 + L1M4 LINE L1 3337 3823 -2323 554 266 30 35 chr6 173675017 173675220 -15604334 - MIR3 SINE MIR 0 208 7 783 247 32 0 chr6 173675301 173675491 -15604063 - MIR SINE MIR 0 262 67 2075 141 7 3 chr6 173676040 173676339 -15603215 + AluJb SINE Alu 1 300 -12 210 37 0 0 chr6 173676654 173676681 -15602873 + (T)n Simple_repeat Simple_repeat 1 27 0 2225 116 0 3 chr6 173676752 173677053 -15602501 + AluSx SINE Alu 1 300 -12 240 182 0 0 chr6 173677360 173677404 -15602150 + L2 LINE L2 3270 3313 0 2354 105 3 0 chr6 173678354 173678658 -15600896 + AluSx SINE Alu 2 306 -6 193 186 23 23 chr6 173680224 173680267 -15599287 - L2 LINE L2 -3 3269 3227 2358 94 0 10 chr6 173681515 173681812 -15597742 + AluSx SINE Alu 1 294 -18 1187 229 56 60 chr6 173681829 173682297 -15597257 + MLT1C LTR MaLR 2 467 0 980 193 14 0 chr6 173684016 173684223 -15595331 + MER93b LTR ERV1 164 373 0 698 264 53 34 chr6 173685276 173685524 -15594030 + MIR SINE MIR 3 259 -3 2344 103 0 3 chr6 173686744 173687055 -15592499 - AluY SINE Alu -1 310 1 306 0 0 0 chr6 173689709 173689743 -15589811 + (TA)n Simple_repeat Simple_repeat 2 35 0 2222 77 48 0 chr6 173689743 173690015 -15589539 - AluSq SINE Alu -28 285 1 287 309 175 0 chr6 173690261 173690387 -15589167 - MIR SINE MIR -75 187 40 262 188 43 0 chr6 173691234 173691303 -15588251 + Charlie1 DNA MER1_type 171 242 -2519 * 553 177 100 8 chr6 173691284 173691324 -15588230 + Charlie1 DNA MER1_type 2620 2655 -106 486 0 0 0 chr6 173691324 173691378 -15588176 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 553 177 100 8 chr6 173691378 173691467 -15588087 + Charlie1 DNA MER1_type 2655 2761 0 404 356 81 19 chr6 173691484 173691745 -15587809 + L1MC1 LINE L1 4906 5182 -964 21 0 0 0 chr6 173691794 173691815 -15587739 + AT_rich Low_complexity Low_complexity 1 21 0 502 340 112 12 chr6 173691816 173692408 -15587146 + L1MC1 LINE L1 5263 5867 -295 2255 96 17 3 chr6 173693801 173694103 -15585451 + AluSq SINE Alu 2 307 -6 182 88 0 29 chr6 173695296 173695330 -15584224 + (CCCCCT)n Simple_repeat Simple_repeat 1 33 0 270 325 75 0 chr6 173695959 173696079 -15583475 - L3 LINE CR1 -7 1570 1442 225 0 0 0 chr6 173697015 173697040 -15582514 + (CA)n Simple_repeat Simple_repeat 1 50 0 225 0 0 0 chr6 173697040 173697065 -15582489 + (CA)n Simple_repeat Simple_repeat 1 25 0 2436 83 0 3 chr6 173698109 173698409 -15581145 + AluSg SINE Alu 1 299 -11 23 0 0 0 chr6 173699280 173699303 -15580251 + AT_rich Low_complexity Low_complexity 1 23 0 1756 127 116 14 chr6 173699450 173699726 -15579828 + AluSx SINE Alu 2 305 -7 261 269 0 3 chr6 173702324 173702702 -15576852 + (TG)n Simple_repeat Simple_repeat 1 376 0 507 280 0 6 chr6 173702804 173702979 -15576575 + (TG)n Simple_repeat Simple_repeat 2 175 0 2174 103 27 0 chr6 173703122 173703414 -15576140 + AluSx SINE Alu 1 300 -12 228 309 18 27 chr6 173704710 173704820 -15574734 + GA-rich Low_complexity Low_complexity 1 109 0 450 288 52 25 chr6 173705569 173705755 -15573799 - MIR SINE MIR -57 205 14 1656 185 11 17 chr6 173706546 173706902 -15572652 + L1MC1 LINE L1 5978 6331 -2 465 267 217 25 chr6 173707786 173708191 -15571363 + L2 LINE L2 2046 2528 -786 2074 155 82 5 chr6 173708210 173708578 -15570976 + MSTD LTR MaLR 1 396 0 383 236 69 42 chr6 173708656 173708800 -15570754 - MIR3 SINE MIR -58 150 3 249 294 0 0 chr6 173708800 173708851 -15570703 - L2 LINE L2 -20 3252 3202 2348 88 0 26 chr6 173709554 173709862 -15569692 + AluSc SINE Alu 1 300 -9 2482 111 11 24 chr6 173709864 173710244 -15569310 - THE1C LTR MaLR 0 375 1 273 369 100 8 chr6 173710404 173710534 -15569020 + L2 LINE L2 3126 3267 -5 2011 123 3 62 chr6 173710988 173711313 -15568241 - AluSx SINE Alu -6 306 1 271 231 88 0 chr6 173711378 173711469 -15568085 - MIR SINE MIR -71 191 93 450 289 39 0 chr6 173712405 173712533 -15567021 - MIR SINE MIR -25 237 105 1740 158 139 16 chr6 173712947 173713328 -15566226 + MSTC LTR MaLR 1 428 0 218 330 55 46 chr6 173713454 173713563 -15565991 + MIR3 SINE MIR 73 182 -26 1869 113 0 36 chr6 173713994 173714268 -15565286 - AluSx SINE Alu -8 304 41 2232 116 0 0 chr6 173714785 173715079 -15564475 + AluSx SINE Alu 1 294 -18 181 290 72 0 chr6 173716388 173716457 -15563097 + MIR3 SINE MIR 125 198 -10 270 0 0 0 chr6 173717589 173717619 -15561935 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 427 229 112 71 chr6 173718262 173718338 -15561216 - MER45A DNA AcHobo -1404 177 106 2173 130 7 0 chr6 173718338 173718639 -15560915 + AluSx SINE Alu 1 303 -9 427 229 112 71 chr6 173718639 173718732 -15560822 - MER45A DNA AcHobo -1475 106 1 661 243 111 30 chr6 173719968 173720203 -15559351 - MER112 DNA MER1_type -6 254 1 410 266 95 105 chr6 173720647 173720952 -15558602 - L2 LINE L2 -1 3271 2970 578 313 144 30 chr6 173721059 173721490 -15558064 - L2 LINE L2 -604 2710 2231 1970 113 72 3 chr6 173722108 173722400 -15557154 + AluSx SINE Alu 1 312 0 2333 75 41 0 chr6 173722953 173723245 -15556309 - AluY SINE Alu -7 304 1 297 358 114 28 chr6 173724415 173724837 -15554717 + L2 LINE L2 2471 2928 -386 218 349 16 32 chr6 173725457 173725583 -15553971 - MIR SINE MIR -66 196 73 350 256 38 53 chr6 173725766 173725899 -15553655 - L1ME4a LINE L1 -175 5946 5816 353 313 30 38 chr6 173726246 173726377 -15553177 - L1ME4a LINE L1 -355 5807 5678 836 169 17 68 chr6 173728154 173728390 -15551164 + Charlie5 DNA MER1_type 2401 2624 0 181 331 65 24 chr6 173729106 173729275 -15550279 - MIR SINE MIR -27 235 60 490 315 87 9 chr6 173729807 173730026 -15549528 + MIR SINE MIR 6 241 -21 668 173 194 47 chr6 173730434 173730625 -15548929 + MER20 DNA MER1_type 1 219 0 420 196 21 62 chr6 173731704 173731949 -15547605 + MER33 DNA MER1_type 1 312 -51 1823 184 23 50 chr6 173732907 173733390 -15546164 + MER31A LTR ERV1 6 475 -10 340 308 86 0 chr6 173734345 173734462 -15545092 - MIR3 SINE MIR -6 202 76 213 215 301 11 chr6 173734704 173734797 -15544757 + MER5A DNA MER1_type 44 163 -26 * 439 245 31 0 chr6 173734728 173734826 -15544728 - MER5A DNA MER1_type -80 109 9 436 189 63 78 chr6 173734888 173735067 -15544487 + MIR3 SINE MIR 28 200 -8 192 337 105 11 chr6 173737200 173737295 -15542259 + MIR SINE MIR 2 105 -157 2272 104 3 7 chr6 173737575 173737908 -15541646 + AluSp SINE Alu 1 313 0 645 179 20 94 chr6 173738637 173738838 -15540716 + MLT2C2 LTR ERVL 279 464 0 448 326 82 16 chr6 173738896 173739141 -15540413 - L2 LINE L2 -619 2695 2435 2171 125 0 0 chr6 173739322 173739610 -15539944 - AluSx SINE Alu -23 289 2 397 242 84 11 chr6 173740965 173741060 -15538494 - L2 LINE L2 0 3272 3171 1647 40 0 0 chr6 173741060 173741258 -15538296 + L1PA4 LINE L1 5958 6155 0 1049 230 9 0 chr6 173741408 173741625 -15537929 + MER20 DNA MER1_type 1 219 0 403 205 0 69 chr6 173741636 173741749 -15537805 + MER5A DNA MER1_type 4 109 -80 202 292 169 22 chr6 173741971 173742060 -15537494 - MER5A DNA MER1_type -50 139 38 333 185 0 0 chr6 173742906 173742971 -15536583 + (TG)n Simple_repeat Simple_repeat 2 66 0 236 130 0 0 chr6 173742971 173743017 -15536537 + L1MC4 LINE L1 6658 6703 -1339 391 275 28 69 chr6 173743832 173744196 -15535358 + L1ME4a LINE L1 4310 4658 -1488 31 44 0 0 chr6 173744358 173744403 -15535151 + AT_rich Low_complexity Low_complexity 1 45 0 789 264 145 36 chr6 173744640 173745528 -15534026 + L1ME4a LINE L1 5116 6119 -2 1042 113 126 0 chr6 173745950 173746109 -15533445 + MSTA LTR MaLR 250 428 0 253 276 262 14 chr6 173746143 173746288 -15533266 + MER5A DNA MER1_type 9 189 0 1411 165 16 85 chr6 173746618 173746796 -15532758 - AluJo SINE Alu -18 294 105 237 33 0 0 chr6 173746796 173746826 -15532728 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1929 115 0 21 chr6 173746828 173747116 -15532438 - AluSx SINE Alu -30 282 1 1411 165 16 85 chr6 173747116 173747250 -15532304 - AluJo SINE Alu -208 104 1 200 302 19 0 chr6 173748352 173748405 -15531149 - L2 LINE L2 -10 3303 3250 398 292 100 40 chr6 173748594 173748844 -15530710 + L2 LINE L2 2841 3105 -167 270 320 64 0 chr6 173748848 173748973 -15530581 - L2 LINE L2 0 3272 3140 189 338 88 0 chr6 173749019 173749099 -15530455 + L2 LINE L2 3161 3247 -25 2115 88 0 7 chr6 173749857 173750162 -15529392 - AluSq SINE Alu 0 307 5 14815 206 27 35 chr6 173750684 173752892 -15526662 + L1PA12 LINE L1 1539 3763 -3821 1894 148 0 3 chr6 173752892 173753190 -15526364 + AluSx SINE Alu 1 297 -15 14815 206 27 35 chr6 173753190 173754353 -15525201 + L1PA12 LINE L1 3763 4934 -2650 207 0 0 0 chr6 173754353 173754376 -15525178 + (CA)n Simple_repeat Simple_repeat 2 24 0 14815 206 27 35 chr6 173754376 173755592 -15523962 + L1PA12 LINE L1 4934 5972 -1612 2292 85 3 0 chr6 173755592 173755898 -15523656 + AluY SINE Alu 1 307 -4 14815 206 27 35 chr6 173755898 173756011 -15523543 + L1PA12 LINE L1 5972 6084 -1500 183 42 0 0 chr6 173756173 173756197 -15523357 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1194 251 119 11 chr6 173756362 173756826 -15522728 - Charlie4a DNA MER1_type 0 508 1 2165 98 0 3 chr6 173757103 173757400 -15522154 - AluSq SINE Alu -9 304 9 216 234 143 0 chr6 173757999 173758076 -15521478 + MIR SINE MIR 60 147 -61 2251 79 14 0 chr6 173758747 173759038 -15520516 + AluSx SINE Alu 1 295 -17 891 189 0 0 chr6 173759131 173759284 -15520270 + MER2 DNA MER2_type 1 153 -192 1629 157 0 0 chr6 173759284 173759546 -15520008 - AluJb SINE Alu -10 302 41 556 196 78 0 chr6 173759546 173759648 -15519906 + MER2 DNA MER2_type 236 345 0 2061 88 60 0 chr6 173761082 173761366 -15518188 - AluSx SINE Alu -11 301 1 2244 81 0 3 chr6 173761374 173761669 -15517885 - AluSc SINE Alu -15 294 1 481 352 108 13 chr6 173762036 173762393 -15517161 - L1 LINE L1 -1774 4372 3978 342 201 20 122 chr6 173762394 173762523 -15517031 - MLT1E LTR MaLR 0 654 495 566 207 15 81 chr6 173762639 173762837 -15516717 - MLT1E2 LTR MaLR -441 185 1 1940 106 57 0 chr6 173762885 173763168 -15516386 + AluSx SINE Alu 1 299 -13 290 287 99 20 chr6 173763168 173763461 -15516093 - L1 LINE L1 -2208 3938 3623 337 270 210 32 chr6 173763730 173763978 -15515576 - L1 LINE L1 -2848 3298 3007 304 301 113 8 chr6 173764327 173764460 -15515094 + LTR67 LTR ERVL 406 552 -5 454 349 131 17 chr6 173764627 173765094 -15514460 - L1 LINE L1 -3291 2855 2336 244 163 47 58 chr6 173766521 173766607 -15512947 + (CAGAGA)n Simple_repeat Simple_repeat 6 90 0 433 353 35 5 chr6 173766807 173767008 -15512546 - MIR SINE MIR -43 219 13 1940 136 13 7 chr6 173768100 173768410 -15511144 + AluSx SINE Alu 1 312 0 649 265 160 0 chr6 173768998 173769217 -15510337 - MIR SINE MIR -2 260 7 321 297 11 22 chr6 173771364 173771455 -15508099 + MER5B DNA MER1_type 7 96 -82 2607 109 25 3 chr6 173771950 173772317 -15507237 - THE1C LTR MaLR 0 375 1 10602 97 48 12 chr6 173772317 173773843 -15505711 - THE1C-int LTR MaLR 0 1580 1 2601 78 84 0 chr6 173773843 173774189 -15505365 - THE1C LTR MaLR 0 375 1 209 273 0 0 chr6 173774834 173774878 -15504676 + polypurine Low_complexity Low_complexity 2 45 0 463 266 115 50 chr6 173776101 173776319 -15503235 - MIR SINE MIR -3 259 28 307 296 0 11 chr6 173776319 173776390 -15503164 + CT-rich Low_complexity Low_complexity 3 74 -15 2179 68 17 7 chr6 173776390 173776685 -15502869 - AluY SINE Alu -13 298 1 307 296 0 11 chr6 173776685 173776701 -15502853 + CT-rich Low_complexity Low_complexity 74 89 0 2975 210 77 4 chr6 173776704 173777394 -15502160 - L1MB7 LINE L1 -11 6173 5434 1988 99 0 14 chr6 173777398 173777714 -15501840 - AluSx SINE Alu 0 312 1 380 227 182 14 chr6 173777951 173778096 -15501458 + MIR3 SINE MIR 7 170 -63 883 213 87 28 chr6 173780835 173781088 -15498466 + L1MC4 LINE L1 7774 8041 -1 390 215 172 0 chr6 173781148 173781241 -15498313 - L1MC4 LINE L1 -1339 6703 6595 1709 163 26 7 chr6 173782646 173782952 -15496602 - AluJo SINE Alu 0 312 1 347 315 52 98 chr6 173783108 173783587 -15495967 + L2 LINE L2 2816 3272 0 272 159 0 32 chr6 173784952 173784962 -15494592 + (TAGA)n Simple_repeat Simple_repeat 2 11 -51 2702 3 0 0 chr6 173784962 173785260 -15494294 + AluYa5 SINE Alu 1 298 -13 272 159 0 32 chr6 173785260 173785312 -15494242 + (TAGA)n Simple_repeat Simple_repeat 11 62 0 1700 145 0 7 chr6 173787209 173787478 -15492076 + AluJb SINE Alu 21 287 -25 606 28 0 0 chr6 173787479 173787551 -15492003 + (AAATG)n Simple_repeat Simple_repeat 2 73 0 724 221 125 12 chr6 173788032 173788272 -15491282 - HsTC2 DNA Tc2 -1 1897 1631 1009 234 151 42 chr6 173788402 173788932 -15490622 + L2 LINE L2 2753 3312 -1 245 273 38 95 chr6 173790352 173790667 -15488887 - L2 LINE L2 0 3272 2976 439 188 50 40 chr6 173790783 173790884 -15488670 + L2 LINE L2 3209 3310 -3 222 243 112 132 chr6 173791987 173792139 -15487415 - MIR SINE MIR 0 262 114 21 0 0 0 chr6 173793143 173793164 -15486390 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 173793199 173793220 -15486334 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 173793255 173793276 -15486278 + AT_rich Low_complexity Low_complexity 1 21 0 2212 71 0 4 chr6 173793318 173793626 -15485928 - AluY SINE Alu 0 311 5 377 100 0 0 chr6 173793580 173793630 -15485924 - Alu SINE Alu -250 50 1 241 302 30 83 chr6 173795749 173795918 -15483636 + MIR SINE MIR 90 249 -13 1605 205 129 39 chr6 173796380 173796614 -15482940 + MLT1F1 LTR MaLR 4 216 -351 1888 147 0 16 chr6 173796614 173796927 -15482627 + AluJo SINE Alu 1 308 -4 1605 205 129 39 chr6 173796927 173797198 -15482356 + MLT1F1 LTR MaLR 216 567 0 2219 90 3 17 chr6 173797647 173797948 -15481606 + AluSx SINE Alu 2 298 -14 1469 185 14 30 chr6 173798169 173798466 -15481088 - AluJb SINE Alu -20 292 1 2022 104 17 3 chr6 173800447 173800736 -15478818 + AluSx SINE Alu 1 293 -19 1148 267 94 29 chr6 173801714 173802185 -15477369 + L1ME3A LINE L1 5657 6162 -8 2422 45 0 13 chr6 173802293 173802606 -15476948 + AluY SINE Alu 1 309 -2 384 269 74 0 chr6 173804095 173804203 -15475351 + MIR3 SINE MIR 70 185 -23 319 275 43 29 chr6 173804212 173804350 -15475204 + MIR SINE MIR 15 154 -108 741 172 0 8 chr6 173805363 173805497 -15474057 - FLAM_C SINE Alu 0 133 1 790 236 41 20 chr6 173805796 173805991 -15473563 + MIR SINE MIR 25 223 -39 2167 65 3 42 chr6 173806364 173806672 -15472882 + AluSp SINE Alu 1 296 -17 311 333 90 19 chr6 173807398 173807764 -15471790 - L2 LINE L2 -1199 2115 1724 2045 88 7 3 chr6 173807783 173808095 -15471459 - AluSx SINE Alu 0 313 1 558 194 60 7 chr6 173808476 173808604 -15470950 + MIR SINE MIR 28 152 -62 859 239 43 86 chr6 173808760 173809132 -15470422 + MLT1E2 LTR MaLR 80 435 -191 1654 239 86 103 chr6 173809177 173809380 -15470174 + HAL1 LINE L1 1009 1214 -1293 1711 155 3 40 chr6 173809380 173809683 -15469871 + AluJo SINE Alu 1 292 -20 1654 239 86 103 chr6 173809683 173810370 -15469184 + HAL1 LINE L1 1214 1884 -623 2034 125 7 0 chr6 173810476 173810771 -15468783 + AluSx SINE Alu 1 297 -15 443 203 51 32 chr6 173810776 173810934 -15468620 + HAL1 LINE L1 2052 2212 -295 364 230 272 11 chr6 173810948 173811139 -15468415 + HAL1 LINE L1 2267 2507 0 373 276 23 0 chr6 173811667 173811754 -15467800 - MIR3 SINE MIR 0 208 120 1913 128 4 0 chr6 173812948 173813274 -15466280 + AluSx SINE Alu 1 327 0 1710 88 161 11 chr6 173813347 173813608 -15465946 + AluSg SINE Alu 1 300 0 673 45 48 38 chr6 173813610 173813862 -15465692 + AluY SINE Alu 1 311 0 1483 278 15 21 chr6 173813876 173814354 -15465200 - L1ME3A LINE L1 -320 5850 5376 352 363 30 4 chr6 173814804 173815038 -15464516 + MLT1L LTR MaLR 368 607 -8 2024 121 0 0 chr6 173815067 173815397 -15464157 + AluSx SINE Alu 1 330 0 180 344 133 0 chr6 173815910 173816038 -15463516 + MIR SINE MIR 81 225 -37 1451 248 102 26 chr6 173817434 173818200 -15461354 + L2 LINE L2 2482 3313 0 1463 210 70 22 chr6 173818496 173818853 -15460701 + MLT1A2 LTR MaLR 1 374 0 888 137 0 0 chr6 173819772 173819903 -15459651 - FLAM_C SINE Alu -2 131 1 234 245 163 41 chr6 173820224 173820322 -15459232 + MIR3 SINE MIR 50 159 -49 1597 201 89 45 chr6 173821226 173821673 -15457881 - MLT1C LTR MaLR 0 467 1 2035 142 0 0 chr6 173822053 173822362 -15457192 + AluSx SINE Alu 1 309 -3 202 264 179 28 chr6 173822631 173822737 -15456817 + L2 LINE L2 3150 3271 -1 343 319 51 25 chr6 173823854 173824011 -15455543 - MIR3 SINE MIR -7 201 41 532 256 300 8 chr6 173824819 173825478 -15454076 + L2 LINE L2 2458 3311 -2 282 284 159 0 chr6 173826606 173826694 -15452860 - L2 LINE L2 -2 3311 3210 278 384 75 0 chr6 173827091 173827224 -15452330 + MIR SINE MIR 108 250 -12 200 302 0 32 chr6 173827375 173827438 -15452116 + L2 LINE L2 3001 3061 -252 319 285 146 34 chr6 173827884 173828179 -15451375 + L2 LINE L2 2376 2703 -611 545 95 0 0 chr6 173828210 173828284 -15451270 + AluJ/FRAM SINE Alu 222 295 -17 394 245 277 0 chr6 173830403 173830558 -15448996 + MIR SINE MIR 2 199 -63 186 364 43 50 chr6 173830926 173831066 -15448488 + MIR3 SINE MIR 3 141 -67 214 328 82 8 chr6 173831590 173831712 -15447842 - MIR3 SINE MIR 0 208 78 2048 107 0 23 chr6 173832029 173832329 -15447225 - AluSx SINE Alu -19 293 1 25 0 0 0 chr6 173832405 173832430 -15447124 + AT_rich Low_complexity Low_complexity 1 25 0 186 71 0 0 chr6 173832925 173832953 -15446601 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 1507 93 5 0 chr6 173832955 173833160 -15446394 - AluSg/x SINE Alu -24 286 81 180 0 0 0 chr6 173833304 173833324 -15446230 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 380 85 0 0 chr6 173833500 173833559 -15445995 - L1PA15 LINE L1 0 6165 6107 234 133 67 17 chr6 173833559 173833614 -15445940 + LTR66 LTR ERVL 382 439 -171 307 164 104 0 chr6 173833614 173833681 -15445873 + L1MCa LINE L1 1995 2068 -4358 387 258 0 32 chr6 173833682 173833775 -15445779 + L1MC4 LINE L1 6614 6703 -1339 2518 136 19 9 chr6 173833779 173834190 -15445364 - L1PA15 LINE L1 -35 6130 5720 2197 98 0 3 chr6 173835016 173835312 -15444242 + AluSg SINE Alu 1 295 -15 2089 96 26 3 chr6 173835504 173835807 -15443747 + AluSx SINE Alu 1 310 -2 269 155 17 0 chr6 173836187 173836245 -15443309 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 259 265 10 167 chr6 173837392 173837491 -15442063 + MER97b DNA MER1_type? 6 58 -995 2096 121 16 0 chr6 173837491 173837798 -15441756 + AluSx SINE Alu 1 312 0 259 265 10 167 chr6 173837798 173837902 -15441652 + MER97b DNA MER1_type? 58 177 -876 1096 227 44 4 chr6 173838723 173838974 -15440580 - MIR SINE MIR 0 262 2 299 329 0 12 chr6 173839248 173839330 -15440224 - L2 LINE L2 0 3272 3192 26 0 0 0 chr6 173839605 173839631 -15439923 + AT_rich Low_complexity Low_complexity 1 26 0 7103 156 46 18 chr6 173840570 173840652 -15438902 - L1 LINE L1 -1875 4271 4193 2139 105 7 0 chr6 173840652 173840958 -15438596 - AluSx SINE Alu -4 308 1 7103 156 46 18 chr6 173840958 173842280 -15437274 - L1 LINE L1 -1953 4193 2828 5880 136 43 10 chr6 173842276 173843767 -15435787 + L1MA8 LINE L1 4248 5781 -510 * 2098 122 0 6 chr6 173843767 173844079 -15435475 + AluSx SINE Alu 1 310 -2 2184 151 8 6 chr6 173844087 173844444 -15435110 - MER46B DNA MER2_type -1 235 3 537 160 0 11 chr6 173844445 173844539 -15435015 + MER46A DNA MER2_type 144 236 0 2741 162 19 8 chr6 173844539 173845020 -15434534 + L1MA8 LINE L1 5800 6285 -6 243 0 0 0 chr6 173845547 173845574 -15433980 + (CACTC)n Simple_repeat Simple_repeat 3 29 0 249 246 40 111 chr6 173846132 173846258 -15433296 - MIR SINE MIR -33 229 113 287 260 40 40 chr6 173846828 173846928 -15432626 + MER5A DNA MER1_type 64 163 -26 366 262 189 19 chr6 173847438 173847644 -15431910 - L1ME4a LINE L1 -87 6034 5794 618 119 0 0 chr6 173847672 173847756 -15431798 + AluS SINE Alu 4 87 -225 219 253 200 21 chr6 173847966 173848061 -15431493 - MIR SINE MIR -19 243 132 1120 264 70 13 chr6 173848196 173848579 -15430975 + MLT1I LTR MaLR 1 405 -4 411 282 172 6 chr6 173849123 173849297 -15430257 + MIR SINE MIR 47 249 -13 2353 167 12 45 chr6 173850108 173850224 -15429330 + L1MB7 LINE L1 5711 5829 -355 1868 127 0 0 chr6 173850224 173850542 -15429012 + AluSx SINE Alu 17 334 0 2353 167 12 45 chr6 173850542 173850914 -15428640 + L1MB7 LINE L1 5829 6184 0 2006 129 7 0 chr6 173851200 173851502 -15428052 - AluSx SINE Alu -8 304 1 322 194 15 30 chr6 173851609 173851676 -15427878 - L2 LINE L2 -10 3262 3197 2084 118 0 0 chr6 173852002 173852298 -15427256 - AluSx SINE Alu -16 296 1 255 125 0 0 chr6 173852929 173852969 -15426585 + (A)n Simple_repeat Simple_repeat 1 40 0 290 236 185 34 chr6 173853258 173853396 -15426158 + MLT1H1 LTR MaLR 393 555 0 1929 133 0 0 chr6 173854004 173854310 -15425244 - AluSx SINE Alu 0 311 6 235 236 22 67 chr6 173857410 173857499 -15422055 + L3 LINE CR1 1492 1576 -1 1753 125 0 90 chr6 173857622 173857827 -15421727 - AluJo SINE Alu 0 312 149 1876 96 73 43 chr6 173857827 173858128 -15421426 - AluSx SINE Alu -2 310 1 1753 125 0 90 chr6 173858128 173858265 -15421289 - AluJo SINE Alu -163 149 1 1516 92 22 22 chr6 173858981 173859208 -15420346 + AluSp SINE Alu 79 305 -8 24 0 0 0 chr6 173859575 173859599 -15419955 + AT_rich Low_complexity Low_complexity 1 24 0 2079 107 7 3 chr6 173860865 173861032 -15418522 - AluSq SINE Alu -12 301 131 252 0 0 0 chr6 173861032 173861060 -15418494 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2079 107 7 3 chr6 173861060 173861192 -15418362 - AluSq SINE Alu -182 131 1 844 158 12 41 chr6 173863390 173863561 -15415993 + FRAM SINE Alu 1 166 0 516 279 132 35 chr6 173863824 173864082 -15415472 + MLT1J LTR MaLR 229 511 0 261 0 0 0 chr6 173864240 173864269 -15415285 + (CA)n Simple_repeat Simple_repeat 2 30 0 395 233 0 0 chr6 173864360 173864433 -15415121 + L2 LINE L2 3239 3311 -2 2089 86 0 7 chr6 173865089 173865367 -15414187 + AluSx SINE Alu 37 312 0 2067 116 3 0 chr6 173866199 173866493 -15413061 + AluSx SINE Alu 2 296 -16 289 239 0 70 chr6 173866578 173866649 -15412905 - L2 LINE L2 -9 3263 3198 309 26 0 0 chr6 173867021 173867059 -15412495 + (CA)n Simple_repeat Simple_repeat 1 38 0 904 84 0 15 chr6 173867523 173867654 -15411900 - AluY SINE Alu -12 299 171 851 259 35 13 chr6 173867973 173868205 -15411349 - MIR SINE MIR 0 262 26 1181 232 43 20 chr6 173868392 173868688 -15410866 + L1ME1 LINE L1 5870 6331 -3 562 314 31 11 chr6 173868991 173869182 -15410372 + MIR SINE MIR 17 211 -51 1629 89 5 0 chr6 173869182 173869395 -15410159 + AluSx SINE Alu 1 214 -98 1619 155 50 7 chr6 173869880 173869998 -15409556 + AluJo SINE Alu 1 112 -200 189 0 0 0 chr6 173869998 173870019 -15409535 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 1619 155 50 7 chr6 173870019 173870177 -15409377 + AluJo SINE Alu 112 289 -23 670 277 26 0 chr6 173870233 173870428 -15409126 - MER115 DNA AcHobo -7 686 487 529 260 36 40 chr6 173870499 173870722 -15408832 - MER115 DNA AcHobo -321 372 151 2051 134 3 0 chr6 173870914 173871221 -15408333 - AluSx SINE Alu -4 308 1 1979 118 0 0 chr6 173871350 173871669 -15407885 + AluSx SINE Alu 3 321 0 267 31 0 0 chr6 173872252 173872284 -15407270 + (TC)n Simple_repeat Simple_repeat 2 33 0 234 0 0 0 chr6 173872867 173872893 -15406661 + (ATG)n Simple_repeat Simple_repeat 2 27 0 360 0 0 0 chr6 173872912 173872952 -15406602 + (TG)n Simple_repeat Simple_repeat 2 41 0 2012 122 7 0 chr6 173873367 173873662 -15405892 - AluSx SINE Alu -15 297 1 259 310 305 11 chr6 173873894 173874068 -15405486 + MIR SINE MIR 32 256 -6 713 247 58 11 chr6 173874103 173874293 -15405261 - MIR SINE MIR -12 250 52 2453 120 13 13 chr6 173874688 173875063 -15404491 - THE1C LTR MaLR 0 375 1 1599 162 37 14 chr6 173875650 173875947 -15403607 - AluJb SINE Alu -6 306 3 2063 123 3 0 chr6 173876201 173876501 -15403053 - AluSx SINE Alu -11 301 1 2842 199 29 9 chr6 173877071 173877865 -15401689 - L1MB5 LINE L1 0 6174 5274 270 0 0 0 chr6 173877865 173877895 -15401659 + (TTA)n Simple_repeat Simple_repeat 1 30 0 6676 92 11 1 chr6 173877895 173878825 -15400729 - L1PA10 LINE L1 -20 6148 5211 441 105 12 0 chr6 173879962 173880048 -15399506 + L1MB3 LINE L1 6097 6183 0 274 275 21 146 chr6 173881681 173881914 -15397640 - MIR SINE MIR 0 262 59 250 165 89 101 chr6 173882133 173882212 -15397342 - L2 LINE L2 -7 3265 3188 1939 140 0 0 chr6 173882218 173882510 -15397044 + AluJb SINE Alu 1 292 -20 204 118 29 0 chr6 173882680 173882714 -15396840 + CT-rich Low_complexity Low_complexity 2 36 0 230 244 268 12 chr6 173882856 173882938 -15396616 + MIR SINE MIR 105 207 -55 32 26 0 0 chr6 173883809 173883848 -15395706 + AT_rich Low_complexity Low_complexity 1 39 0 275 281 53 26 chr6 173884408 173884522 -15395032 - MIR3 SINE MIR -1 207 91 218 261 232 0 chr6 173885720 173885789 -15393765 - L2 LINE L2 -2 3270 3186 1780 172 3 0 chr6 173886034 173886325 -15393229 + AluJb SINE Alu 6 297 -15 26 0 0 0 chr6 173886325 173886351 -15393203 + AT_rich Low_complexity Low_complexity 1 26 0 387 270 58 36 chr6 173886762 173886899 -15392655 + MIR SINE MIR 50 189 -73 1961 207 35 61 chr6 173887278 173887725 -15391829 + MLT1D LTR MaLR 1 435 -70 1874 98 11 4 chr6 173887725 173887989 -15391565 - AluSc SINE Alu -9 300 35 1961 207 35 61 chr6 173887989 173888052 -15391502 + MLT1D LTR MaLR 435 498 -7 414 168 0 28 chr6 173888383 173888490 -15391064 + CT-rich Low_complexity Low_complexity 4 107 0 188 348 36 18 chr6 173888493 173888605 -15390949 - L2 LINE L2 -5 3267 3154 597 261 107 13 chr6 173888629 173888863 -15390691 + MER112 DNA MER1_type 1 256 0 205 349 28 28 chr6 173891559 173891668 -15387886 + L2 LINE L2 3198 3306 -7 374 291 99 49 chr6 173892020 173892395 -15387159 - L2 LINE L2 -170 3102 2715 662 325 111 13 chr6 173892405 173893079 -15386475 + L1M4 LINE L1 3922 4659 -1487 209 269 68 72 chr6 173893081 173893330 -15386224 - L2 LINE L2 -620 2694 2447 313 323 10 0 chr6 173894177 173894273 -15385281 - MER5A DNA MER1_type -84 105 9 21 36 0 0 chr6 173894556 173894584 -15384970 + AT_rich Low_complexity Low_complexity 1 28 0 195 205 107 116 chr6 173895984 173896096 -15383458 + MIR SINE MIR 92 202 -60 2231 94 0 0 chr6 173896150 173896449 -15383105 + AluSx SINE Alu 1 299 -13 2141 64 40 20 chr6 173896540 173896838 -15382716 - AluY SINE Alu -5 306 3 241 241 0 17 chr6 173897031 173897089 -15382465 - MLT1L LTR MaLR -3 612 556 275 182 0 18 chr6 173897171 173897226 -15382328 - MLT1L LTR MaLR -548 67 14 3621 154 39 78 chr6 173897980 173898865 -15380689 + L1MC2 LINE L1 5366 6207 -137 296 302 23 16 chr6 173899658 173899787 -15379767 + L1MC4a LINE L1 5521 5650 -471 280 286 22 84 chr6 173899994 173900087 -15379467 + MLT1L LTR MaLR 434 512 -103 1970 73 96 0 chr6 173900087 173900359 -15379195 - AluY SINE Alu -13 298 1 280 286 22 84 chr6 173900359 173900443 -15379111 + MLT1L LTR MaLR 512 600 -15 785 284 55 7 chr6 173900454 173900725 -15378829 + L1MC4a LINE L1 5645 5928 -1880 1958 94 3 78 chr6 173900930 173901250 -15378304 + AluSg SINE Alu 1 296 -14 1650 180 3 19 chr6 173901361 173901677 -15377877 - AluJo SINE Alu -1 311 1 2131 116 3 0 chr6 173902164 173902465 -15377089 - AluSx SINE Alu -10 302 1 189 0 0 0 chr6 173903215 173903236 -15376318 + (A)n Simple_repeat Simple_repeat 1 21 0 253 286 95 8 chr6 173903704 173903830 -15375724 - MIR3 SINE MIR -28 180 44 1721 137 48 0 chr6 173903834 173904105 -15375449 + AluSx SINE Alu 1 284 -28 225 0 0 0 chr6 173904109 173904134 -15375420 + (TAA)n Simple_repeat Simple_repeat 2 26 0 248 259 0 0 chr6 173904876 173904930 -15374624 - L2 LINE L2 -9 3304 3251 1992 151 0 0 chr6 173905465 173905777 -15373777 + AluSx SINE Alu 1 312 0 2277 97 0 0 chr6 173905819 173906119 -15373435 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr6 173906119 173906145 -15373409 + (TA)n Simple_repeat Simple_repeat 2 27 0 183 250 21 21 chr6 173906238 173906286 -15373268 - MER5B DNA MER1_type -2 176 129 300 222 56 0 chr6 173906341 173906413 -15373141 - L1MC4a LINE L1 -1 7807 7732 642 172 139 21 chr6 173906674 173906870 -15372684 - L1MD2 LINE L1 -122 6063 5841 188 327 26 53 chr6 173906895 173907008 -15372546 + MER5A DNA MER1_type 80 189 0 2281 93 0 0 chr6 173907063 173907364 -15372190 + AluSc SINE Alu 1 301 -8 199 368 87 32 chr6 173907375 173907560 -15371994 - L3 LINE CR1 -1123 454 260 1668 87 4 13 chr6 173907978 173908209 -15371345 + AluSx SINE Alu 52 280 -32 224 0 65 0 chr6 173908220 173908251 -15371303 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 285 292 124 18 chr6 173908416 173908529 -15371025 + L2 LINE L2 3183 3307 -6 1231 261 89 39 chr6 173908832 173909140 -15370414 + MLT1J LTR MaLR 5 347 -164 4254 84 22 16 chr6 173909140 173909762 -15369792 + L1PA10 LINE L1 5543 6168 0 1231 261 89 39 chr6 173909762 173909935 -15369619 + MLT1J LTR MaLR 347 510 -1 299 301 229 26 chr6 173910833 173910986 -15368568 + MIR SINE MIR 31 214 -48 405 237 46 61 chr6 173911257 173911388 -15368166 + MER91B DNA MER1_type 1 129 -61 368 337 10 0 chr6 173911401 173911502 -15368052 + MER91B DNA MER1_type 84 185 -5 24 0 0 0 chr6 173912496 173912520 -15367034 + AT_rich Low_complexity Low_complexity 1 24 0 2340 62 0 0 chr6 173912526 173912815 -15366739 + AluY SINE Alu 1 289 -22 313 206 32 64 chr6 173913180 173913316 -15366238 + L1MC3 LINE L1 7717 7785 0 1998 123 13 0 chr6 173913623 173913924 -15365630 + AluSx SINE Alu 1 305 -7 357 245 112 0 chr6 173913984 173914082 -15365472 + MIR SINE MIR 119 227 -35 1820 119 7 36 chr6 173915023 173915325 -15364229 + AluSx SINE Alu 1 293 -19 257 193 12 0 chr6 173916592 173916643 -15362911 + MIR SINE MIR 99 151 -57 521 179 192 86 chr6 173917433 173917667 -15361887 - MER112 DNA MER1_type -1 259 1 201 143 204 0 chr6 173919959 173920057 -15359497 + (GGCTG)n Simple_repeat Simple_repeat 4 121 0 1881 203 75 29 chr6 173920324 173920803 -15358751 + MLT1D LTR MaLR 1 501 -4 2200 85 3 3 chr6 173922248 173922543 -15357011 - AluSc SINE Alu -13 296 2 1898 158 0 16 chr6 173922592 173922902 -15356652 + AluJo SINE Alu 1 305 -7 1000 281 78 68 chr6 173923267 173923783 -15355771 - MLT1G1 LTR MaLR -2 593 73 2169 94 3 13 chr6 173924879 173925186 -15354368 + AluSp SINE Alu 1 304 -9 261 0 0 0 chr6 173925383 173925412 -15354142 + (CA)n Simple_repeat Simple_repeat 2 30 0 242 274 66 9 chr6 173926085 173926191 -15353363 + L1ME LINE L1 5763 5874 -292 541 289 91 39 chr6 173926206 173926615 -15352939 + L1MCc LINE L1 38 467 -5956 1835 250 94 71 chr6 173926960 173928566 -15350988 + L1MCc LINE L1 1129 2969 -4153 926 225 81 51 chr6 173928559 173928892 -15350662 + L1MC4 LINE L1 7699 8041 -1 * 506 210 42 50 chr6 173930222 173930341 -15349213 - L2 LINE L2 0 3313 3196 243 244 0 0 chr6 173930848 173930893 -15348661 + polypurine Low_complexity Low_complexity 3 47 0 31 26 0 0 chr6 173931675 173931713 -15347841 + AT_rich Low_complexity Low_complexity 1 38 0 956 84 0 0 chr6 173931714 173931833 -15347721 - FLAM_C SINE Alu -14 119 1 477 219 86 151 chr6 173931977 173932255 -15347299 - MIR SINE MIR 0 262 3 290 293 191 9 chr6 173932255 173932393 -15347161 + MIR SINE MIR 14 153 -58 1581 161 32 11 chr6 173932675 173932960 -15346594 + AluJo SINE Alu 1 291 -21 884 128 8 0 chr6 173932976 173933109 -15346445 + AluJo SINE Alu 1 134 -178 54 49 0 0 chr6 173936074 173936156 -15343398 + GC_rich Low_complexity Low_complexity 1 82 0 43 88 0 0 chr6 173936301 173936414 -15343140 + GC_rich Low_complexity Low_complexity 1 113 0 21 0 0 0 chr6 173936463 173936484 -15343070 + GC_rich Low_complexity Low_complexity 1 21 0 34 65 0 0 chr6 173936715 173936777 -15342777 + GC_rich Low_complexity Low_complexity 1 62 0 210 37 0 0 chr6 173936948 173936975 -15342579 + (TCC)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr6 173937092 173937116 -15342438 + GC_rich Low_complexity Low_complexity 1 24 0 303 298 221 0 chr6 173938081 173938239 -15341315 - MIR SINE MIR -22 240 48 325 214 29 166 chr6 173938767 173938981 -15340573 + L1MC5 LINE L1 7676 7837 -124 1486 244 96 39 chr6 173938981 173939542 -15340012 - MLT1E LTR MaLR 0 593 1 325 214 29 166 chr6 173939542 173939635 -15339919 + L1MC5 LINE L1 7837 7941 -20 1178 208 4 29 chr6 173939858 173940103 -15339451 - MER8 DNA MER2_type 0 239 1 349 207 141 91 chr6 173940135 173940333 -15339221 - L2 LINE L2 0 3313 3106 262 258 31 41 chr6 173940383 173940480 -15339074 - L2 LINE L2 -367 2946 2851 2359 168 13 0 chr6 173940798 173941196 -15338358 + MER57A LTR ERV1 1 403 0 701 278 25 25 chr6 173941377 173941575 -15337979 - MIR SINE MIR -32 230 33 1188 226 24 45 chr6 173941825 173941982 -15337572 - LTR16C LTR ERVL -36 455 305 3609 102 19 26 chr6 173941982 173942513 -15337041 - MER1A DNA MER1_type 0 527 1 1188 226 24 45 chr6 173942513 173942643 -15336911 - LTR16C LTR ERVL -186 305 174 465 51 0 0 chr6 173943313 173943372 -15336182 - AluSp SINE Alu -12 300 242 * 1362 71 6 0 chr6 173943368 173943541 -15336013 - AluSp SINE Alu -143 170 1 2396 70 3 29 chr6 173943548 173943862 -15335692 - AluY SINE Alu -5 306 1 269 259 142 42 chr6 173943938 173943997 -15335557 - HAL1b LINE L1 -1 1347 1295 2445 61 0 0 chr6 173943997 173944294 -15335260 + AluY SINE Alu 12 308 -3 269 259 142 42 chr6 173944294 173944446 -15335108 - HAL1b LINE L1 -53 1295 1115 783 241 82 29 chr6 173944591 173944836 -15334718 - L1MC4 LINE L1 -303 7739 7482 1372 185 4 16 chr6 173945649 173945898 -15333656 - AluJo SINE Alu -25 287 42 1801 254 113 68 chr6 173946573 173946769 -15332785 - L1MC4a LINE L1 -402 7406 7220 1809 147 3 24 chr6 173946769 173947061 -15332493 + AluJb SINE Alu 1 286 -26 1801 254 113 68 chr6 173947061 173947422 -15332132 - L1MC4a LINE L1 -588 7220 6877 2309 119 0 0 chr6 173947422 173947734 -15331820 - AluSx SINE Alu 0 312 1 1801 254 113 68 chr6 173947734 173948198 -15331356 - L1MC4a LINE L1 -931 6877 6338 386 50 67 0 chr6 173948249 173948307 -15331247 + MER73 LTR ERVL 1 62 -582 2091 188 38 38 chr6 173948307 173948712 -15330842 - MER66B LTR ERV1 0 486 79 2188 105 0 3 chr6 173948712 173949008 -15330546 - AluSx SINE Alu -17 295 1 2091 188 38 38 chr6 173949008 173949080 -15330474 - MER66B LTR ERV1 -406 80 9 * 2962 186 44 9 chr6 173949076 173949645 -15329909 + MER73 LTR ERVL 54 642 -2 934 235 47 8 chr6 173949646 173949901 -15329653 - L1M4 LINE L1 -2053 4093 3829 1799 110 0 0 chr6 173949913 173950150 -15329404 + AluSx SINE Alu 1 237 -75 197 153 0 34 chr6 173950893 173950952 -15328602 + GA-rich Low_complexity Low_complexity 3 59 0 2155 117 7 7 chr6 173951762 173952061 -15327493 + AluSx SINE Alu 1 299 -13 340 278 35 29 chr6 173952450 173952623 -15326931 - L2 LINE L2 -1863 1451 1278 374 324 67 21 chr6 173953469 173953710 -15325844 + MIR SINE MIR 2 255 -7 2195 74 42 3 chr6 173953797 173954081 -15325473 + AluYa5 SINE Alu 1 295 -16 1369 225 52 36 chr6 173954666 173955052 -15324502 - MLT1C LTR MaLR 0 467 76 257 339 213 0 chr6 173955267 173955446 -15324108 - MIR3 SINE MIR -1 261 46 325 260 23 63 chr6 173955877 173956019 -15323535 + MIR SINE MIR 37 181 -62 251 325 81 38 chr6 173956264 173956424 -15323130 + MIR SINE MIR 46 212 -50 199 268 92 73 chr6 173956812 173956976 -15322578 + MIR SINE MIR 44 210 -52 643 160 22 72 chr6 173957219 173957400 -15322154 - MER53 DNA DNA 0 189 18 503 69 14 0 chr6 173957400 173957472 -15322082 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 281 236 41 0 chr6 173958304 173958380 -15321174 + L1ME LINE L1 236 315 -5890 267 103 0 0 chr6 173958507 173958546 -15321008 + (TG)n Simple_repeat Simple_repeat 1 39 0 868 242 105 68 chr6 173958549 173959108 -15320446 + MER34B LTR ERV1 1 542 0 5416 236 86 35 chr6 173959115 173959302 -15320252 + L1ME LINE L1 1960 2136 -4079 2153 110 10 0 chr6 173959302 173959602 -15319952 + AluSg1 SINE Alu 1 303 -6 5416 236 86 35 chr6 173959602 173960334 -15319220 + L1ME LINE L1 2136 2829 -3386 2321 95 7 0 chr6 173960334 173960638 -15318916 - AluSg SINE Alu -4 306 1 5416 236 86 35 chr6 173960638 173961062 -15318492 + L1ME LINE L1 2829 3230 -2985 2325 101 0 0 chr6 173961062 173961360 -15318194 - AluSx SINE Alu -14 298 1 5416 236 86 35 chr6 173961360 173961660 -15317894 + L1ME LINE L1 3230 3513 -2702 2439 89 0 0 chr6 173961660 173961964 -15317590 + AluSg SINE Alu 1 304 -6 5416 236 86 35 chr6 173961964 173962453 -15317101 + L1ME LINE L1 3513 4196 -2019 291 356 0 0 chr6 173962457 173962547 -15317007 + LTR16B LTR ERVL 1 90 -374 1865 143 0 21 chr6 173962757 173963044 -15316510 - AluJo SINE Alu -31 281 1 1454 183 23 17 chr6 173963123 173963468 -15316086 + L1ME LINE L1 4204 4550 -1665 1497 210 36 89 chr6 173963641 173964113 -15315441 + MLT2B1 LTR ERVL 18 464 -56 222 150 0 0 chr6 173964149 173964189 -15315365 + (TG)n Simple_repeat Simple_repeat 1 40 0 242 97 52 6 chr6 173964197 173964249 -15315305 + MLT2B3 LTR ERVL 464 554 0 35 71 0 0 chr6 173964376 173964446 -15315108 + AT_rich Low_complexity Low_complexity 1 70 0 191 288 30 45 chr6 173964560 173964626 -15314928 + L2 LINE L2 3203 3267 -5 552 266 92 16 chr6 173964677 173964861 -15314693 - MIR SINE MIR 0 262 65 746 308 28 4 chr6 173965457 173965704 -15313850 + MIR SINE MIR 4 256 -6 1653 65 0 0 chr6 173965704 173965903 -15313651 + AluY SINE Alu 99 297 -14 21 0 0 0 chr6 173965959 173965980 -15313574 + AT_rich Low_complexity Low_complexity 1 21 0 1062 206 29 0 chr6 173966014 173966218 -15313336 - MER58A DNA MER1_type 0 224 15 909 216 88 18 chr6 173966242 173966469 -15313085 + MIR SINE MIR 20 262 0 1337 239 123 30 chr6 173966497 173966962 -15312592 - MLT1J LTR MaLR -3 508 1 316 254 0 0 chr6 173968144 173968211 -15311343 + L2 LINE L2 3247 3313 0 21 57 0 0 chr6 173968742 173968777 -15310777 + AT_rich Low_complexity Low_complexity 1 35 0 354 143 0 0 chr6 173968778 173968841 -15310713 + (TCCC)n Simple_repeat Simple_repeat 1 63 0 2201 93 7 0 chr6 173968841 173969131 -15310423 - AluSc SINE Alu -17 292 1 1526 139 66 26 chr6 173969136 173969438 -15310116 - L1MA8 LINE L1 0 6291 5978 2052 123 7 13 chr6 173969642 173969942 -15309612 - AluSx SINE Alu -14 298 1 386 315 105 0 chr6 173970449 173970630 -15308924 - MARNA DNA Mariner -338 248 49 3003 88 0 3 chr6 173970740 173971105 -15308449 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr6 173971276 173971299 -15308255 + AT_rich Low_complexity Low_complexity 1 23 0 2166 115 0 0 chr6 173971826 173972113 -15307441 + AluSx SINE Alu 1 287 -25 623 294 57 18 chr6 173972154 173972436 -15307118 + L1MC5 LINE L1 7609 7901 -60 21 0 0 0 chr6 173972634 173972655 -15306899 + AT_rich Low_complexity Low_complexity 1 21 0 507 216 24 16 chr6 173973240 173973365 -15306189 - MLT1J2 LTR MaLR -306 144 19 262 319 14 0 chr6 173973409 173973478 -15306076 - L2 LINE L2 0 3313 3244 30 27 0 0 chr6 173973627 173973664 -15305890 + AT_rich Low_complexity Low_complexity 1 37 0 624 219 27 20 chr6 173973710 173973856 -15305698 + MIR SINE MIR 105 251 -11 5562 202 38 50 chr6 173973987 173975361 -15304193 + L1MC4 LINE L1 6536 7892 -150 685 118 109 0 chr6 173975397 173975516 -15304038 + L1MB3 LINE L1 6044 6175 -8 1928 110 45 71 chr6 173975600 173975981 -15303573 - THE1C LTR MaLR 0 375 5 1655 228 28 48 chr6 173976082 173976232 -15303322 + MER20B DNA MER1_type 1 152 -371 3007 68 3 3 chr6 173976232 173976587 -15302967 - THE1A LTR MaLR 0 355 1 1655 228 28 48 chr6 173976587 173976925 -15302629 + MER20B DNA MER1_type 152 484 -39 1512 173 13 70 chr6 173977050 173977363 -15302191 + AluJb SINE Alu 1 295 -17 662 182 193 5 chr6 173977944 173978131 -15301423 + MER20B DNA MER1_type 516 737 -46 2149 118 3 10 chr6 173978140 173978444 -15301110 + AluJb SINE Alu 2 303 -9 223 335 110 17 chr6 173978609 173978782 -15300772 + L3 LINE CR1 1181 1369 -208 186 219 0 0 chr6 173978891 173978923 -15300631 + L3 LINE CR1 1440 1471 -106 363 333 20 27 chr6 173978996 173979146 -15300408 + MIR SINE MIR 31 179 -83 227 278 28 0 chr6 173979321 173979393 -15300161 + MLT1K LTR MaLR 515 588 0 255 197 7 162 chr6 173980499 173980550 -15299004 - LTR67 LTR ERVL 0 557 500 2152 126 7 3 chr6 173980550 173980852 -15298702 - AluSx SINE Alu -9 303 1 255 197 7 162 chr6 173980852 173980942 -15298612 - LTR67 LTR ERVL -57 500 438 1675 149 60 3 chr6 173981215 173981497 -15298057 - MLT2D LTR ERVL -116 298 1 292 296 0 0 chr6 173982537 173982608 -15296946 - L2 LINE L2 0 3313 3243 907 313 89 63 chr6 173984160 173985022 -15294532 + L1ME1 LINE L1 45 929 -5190 365 241 128 14 chr6 173985036 173985177 -15294377 + L1ME1 LINE L1 968 1124 -4995 966 251 59 11 chr6 173985229 173985500 -15294054 + LTR41 LTR ERVL 17 300 -473 803 275 13 8 chr6 173985561 173985797 -15293757 + L1ME1 LINE L1 3273 3509 -2620 3275 231 80 19 chr6 173985813 173987155 -15292399 + L1ME1 LINE L1 4720 6144 -5 262 254 0 45 chr6 173987162 173987229 -15292325 + MLT1L LTR MaLR 445 508 -107 1706 173 48 7 chr6 173987479 173987774 -15291780 + AluJo SINE Alu 1 307 -5 1477 238 80 96 chr6 173988466 173989017 -15290537 - MLT1F1 LTR MaLR 0 567 1 566 261 90 30 chr6 173989154 173989505 -15290049 + MLT1J2 LTR MaLR 1 427 -23 264 346 74 0 chr6 173989517 173989774 -15289780 + L1 LINE L1 4737 5018 -1128 346 248 104 24 chr6 173989802 173989927 -15289627 - LTR49-int LTR ERV1 -7111 426 292 325 184 0 126 chr6 173989964 173990051 -15289503 - LTR49-int LTR ERV1 -4150 2181 2106 433 257 73 65 chr6 173990059 173990304 -15289250 - LTR49-int LTR ERV1 -4185 2146 1900 1499 177 90 17 chr6 173990306 173990744 -15288810 - LTR54 LTR ERV1 -2 496 1 825 188 85 6 chr6 173991209 173991374 -15288180 + MER45A DNA AcHobo 1 178 0 1744 154 27 24 chr6 173991913 173992205 -15287349 - AluJo SINE Alu -19 293 1 3113 39 30 0 chr6 173992371 173992733 -15286821 + L1PA7 LINE L1 5782 6154 0 2345 142 22 6 chr6 173993547 173993906 -15285648 + MLT1A1 LTR MaLR 1 365 0 246 292 35 44 chr6 173993915 173994028 -15285526 - MIR SINE MIR -138 124 13 1934 108 3 61 chr6 173994271 173994594 -15284960 + AluSg SINE Alu 1 306 0 778 152 0 0 chr6 173994595 173994707 -15284847 + AluJb SINE Alu 197 308 -4 3380 81 30 7 chr6 173994721 173994768 -15284786 - MLT2A1 LTR ERVL 0 444 400 228 35 0 0 chr6 173994768 173994797 -15284757 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 42 0 0 chr6 173994796 173994820 -15284734 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 3380 81 30 7 chr6 173994797 173995206 -15284348 - MLT2A1 LTR ERVL -44 400 1 321 202 83 113 chr6 173995870 173996038 -15283516 + L2 LINE L2 3097 3259 -54 1872 118 0 57 chr6 173996857 173997154 -15282400 + AluSx SINE Alu 3 282 -30 2417 63 23 0 chr6 173997367 173997668 -15281886 - AluSc SINE Alu -1 308 1 543 185 0 0 chr6 173997748 173997829 -15281725 - FLAM_A SINE Alu -22 120 40 335 194 16 0 chr6 173998100 173998162 -15281392 + MIR SINE MIR 43 105 -157 468 260 138 30 chr6 173998283 173998595 -15280959 - L1ME4a LINE L1 -287 5834 5575 297 219 158 48 chr6 173998595 173998741 -15280813 + MIR SINE MIR 93 254 -8 313 278 149 85 chr6 173999550 173999729 -15279825 - L1M2 LINE L1 -5978 871 705 210 37 0 0 chr6 173999729 173999756 -15279798 + (CGG)n Simple_repeat Simple_repeat 1 27 0 313 278 149 85 chr6 173999756 174000000 -15279554 - L1M2 LINE L1 -6144 705 421 205 169 17 34 chr6 174000182 174000241 -15279313 + (CGGGG)n Simple_repeat Simple_repeat 3 60 0 2300 71 0 14 chr6 174001657 174001954 -15277600 + AluSx SINE Alu 1 293 -19 2448 66 7 7 chr6 174002914 174003219 -15276335 + AluY SINE Alu 1 305 -6 555 94 65 28 chr6 174003451 174004301 -15275253 + (TA)n Simple_repeat Simple_repeat 1 881 0 1690 161 69 0 chr6 174005182 174005456 -15274098 - AluJb SINE Alu -19 293 1 191 323 130 57 chr6 174005461 174005653 -15273901 + L2 LINE L2 3008 3213 -59 492 252 103 35 chr6 174005939 174006249 -15273305 - L1MEd LINE L1 -3246 2883 2553 421 231 45 19 chr6 174006314 174006470 -15273084 - L1MEd LINE L1 -3695 2434 2275 1040 283 107 36 chr6 174006999 174007268 -15272286 - L1MEd LINE L1 -4652 1477 1229 778 194 161 0 chr6 174007268 174007448 -15272106 + MER3 DNA MER1_type 1 209 0 1040 283 107 36 chr6 174007448 174008103 -15271451 - L1MEd LINE L1 -4900 1229 505 258 241 50 101 chr6 174008328 174008527 -15271027 - L1MEd LINE L1 -5919 200 12 2641 84 53 8 chr6 174009183 174009542 -15270012 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr6 174009965 174009993 -15269561 + AT_rich Low_complexity Low_complexity 1 28 0 1279 169 49 23 chr6 174010525 174010828 -15268726 - LTR45B LTR ERV1 0 783 182 997 158 5 16 chr6 174010836 174011020 -15268534 - AluJb SINE Alu 0 312 131 1627 161 3 31 chr6 174011027 174011313 -15268241 - AluJo SINE Alu -12 300 23 1004 152 14 109 chr6 174011326 174011536 -15268018 - LTR45B LTR ERV1 -297 192 3 2080 147 0 0 chr6 174011701 174011993 -15267561 - AluSx SINE Alu -20 292 1 911 191 0 35 chr6 174012090 174012227 -15267327 - AluJb SINE Alu -9 303 172 2010 125 104 17 chr6 174012227 174012572 -15266982 + THE1C LTR MaLR 1 375 0 911 191 0 35 chr6 174012572 174012607 -15266947 - AluJb SINE Alu -140 172 137 1559 153 25 11 chr6 174012609 174012789 -15266765 - AluJb SINE Alu -11 301 114 225 0 0 0 chr6 174012789 174012814 -15266740 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1559 153 25 11 chr6 174012814 174012908 -15266646 - AluJb SINE Alu -198 114 23 762 124 129 84 chr6 174013162 174013265 -15266289 - MER5A DNA MER1_type -2 187 71 2449 72 7 3 chr6 174013265 174013571 -15265983 - AluY SINE Alu -4 307 1 762 124 129 84 chr6 174013571 174013645 -15265909 - MER5A DNA MER1_type -118 71 2 1859 172 28 0 chr6 174014703 174014993 -15264561 - AluJb SINE Alu -14 298 1 22 0 0 0 chr6 174014993 174015015 -15264539 + AT_rich Low_complexity Low_complexity 1 22 0 325 225 154 0 chr6 174016114 174016217 -15263337 + MIR SINE MIR 34 150 -66 223 269 90 13 chr6 174016689 174016767 -15262787 - L2 LINE L2 -264 3049 2966 467 88 26 44 chr6 174017087 174017200 -15262354 + (TTTC)n Simple_repeat Simple_repeat 3 113 0 1474 181 178 24 chr6 174018116 174018486 -15261068 + MER54A LTR ERVL 475 901 0 752 213 104 31 chr6 174018546 174018833 -15260721 - L1MC5 LINE L1 -36 7925 7618 2896 171 50 95 chr6 174019079 174019803 -15259751 - LTR8 LTR ERV1 0 691 1 2350 129 124 5 chr6 174019916 174020303 -15259251 - Tigger2a DNA MER2_type -1 433 1 1798 163 0 0 chr6 174020547 174020829 -15258725 - AluSx SINE Alu -4 308 27 3103 85 62 2 chr6 174020829 174021263 -15258291 - LTR8 LTR ERV1 -1 690 231 2237 121 0 3 chr6 174021268 174021575 -15257979 - AluSx SINE Alu -6 306 1 1064 94 94 0 chr6 174021592 174021741 -15257813 - LTR8 LTR ERV1 -528 163 1 2225 109 3 10 chr6 174021780 174022091 -15257463 - AluSq SINE Alu -4 309 1 228 250 18 0 chr6 174023299 174023355 -15256199 - MIR3 SINE MIR -32 176 120 1895 150 14 0 chr6 174023445 174023731 -15255823 + AluSx SINE Alu 1 290 -22 1797 184 0 0 chr6 174023790 174024083 -15255471 - AluJb SINE Alu -19 293 1 22 0 0 0 chr6 174024205 174024227 -15255327 + AT_rich Low_complexity Low_complexity 1 22 0 229 247 147 65 chr6 174024742 174024912 -15254642 + L2 LINE L2 3120 3303 -10 523 264 78 112 chr6 174025321 174025616 -15253938 - L2 LINE L2 -25 3247 2963 931 163 25 6 chr6 174025646 174025806 -15253748 + FRAM SINE Alu 1 163 -13 503 276 31 8 chr6 174025881 174026008 -15253546 + MER94 DNA DNA 4 133 -1 263 229 16 0 chr6 174026038 174026099 -15253455 - L2 LINE L2 -1 3312 3251 * 995 309 106 35 chr6 174026091 174027145 -15252409 - L2 LINE L2 -533 2781 1653 21 0 0 0 chr6 174027405 174027426 -15252128 + AT_rich Low_complexity Low_complexity 1 21 0 2044 138 7 7 chr6 174027654 174027950 -15251604 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr6 174027953 174027976 -15251578 + AT_rich Low_complexity Low_complexity 1 23 0 3516 121 93 19 chr6 174028021 174028275 -15251279 - L1MB4 LINE L1 -9 6171 5937 2179 102 7 3 chr6 174028275 174028569 -15250985 - AluSx SINE Alu -17 295 1 3516 121 93 19 chr6 174028569 174028908 -15250646 - L1MB4 LINE L1 -243 5937 5534 200 184 0 26 chr6 174029081 174029119 -15250435 + CT-rich Low_complexity Low_complexity 2 38 0 1633 259 90 48 chr6 174029130 174029258 -15250296 - L1MEc LINE L1 -4326 2070 1949 1718 176 20 0 chr6 174029258 174029553 -15250001 - AluJo SINE Alu -11 301 1 1633 259 90 48 chr6 174029553 174029670 -15249884 - L1MEc LINE L1 -4447 1949 1838 219 36 0 0 chr6 174029670 174029698 -15249856 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1633 259 90 48 chr6 174029698 174030286 -15249268 - L1MEc LINE L1 -4558 1838 1201 232 323 214 5 chr6 174030496 174030688 -15248866 - MIR SINE MIR -2 260 29 737 266 188 44 chr6 174031772 174032314 -15247240 - L1MC4a LINE L1 -1825 5983 5364 2228 85 0 53 chr6 174032409 174032728 -15246826 - AluSq SINE Alu -11 302 1 427 277 57 61 chr6 174032943 174033239 -15246315 - L1MC5 LINE L1 -57 7904 7610 1840 192 97 79 chr6 174033433 174034114 -15245440 - L1MC5 LINE L1 -576 7385 6693 239 248 20 40 chr6 174034361 174034462 -15245092 - L1MC4a LINE L1 -1466 4680 4582 622 243 172 67 chr6 174034538 174034913 -15244641 - MLT1H LTR MaLR -16 533 96 1950 115 87 0 chr6 174034913 174035201 -15244353 - AluSp SINE Alu 0 313 1 622 243 172 67 chr6 174035201 174035302 -15244252 - MLT1H LTR MaLR -453 96 7 2655 115 22 0 chr6 174035305 174035661 -15243893 - THE1B LTR MaLR 0 364 1 391 274 149 24 chr6 174035930 174036178 -15243376 - L1MC4a LINE L1 -1784 6024 5746 * 448 299 17 46 chr6 174036177 174036351 -15243203 + L1MC/D LINE L1 5426 5594 -2214 472 239 99 0 chr6 174036351 174036552 -15243002 - L1MC4a LINE L1 -743 5403 5204 891 251 77 5 chr6 174036607 174036802 -15242752 + MER58A DNA MER1_type 2 210 -14 1212 143 5 39 chr6 174036882 174037085 -15242469 + AluJo SINE Alu 87 282 -30 320 345 78 12 chr6 174088228 174088547 -15191007 + L1MC4a LINE L1 5506 5845 -1963 608 263 166 5 chr6 174089959 174090176 -15189378 + MIR SINE MIR 7 258 -4 15037 115 38 8 chr6 174090219 174092564 -15186990 + Tigger1 DNA MER2_type 1 2417 -1 271 350 86 7 chr6 174092642 174092782 -15186772 + L3 LINE CR1 1413 1563 -14 21 36 0 0 chr6 174094317 174094345 -15185209 + AT_rich Low_complexity Low_complexity 1 28 0 229 287 60 60 chr6 174095816 174095983 -15183571 - L1MC5 LINE L1 -824 7137 6971 2302 231 153 16 chr6 174096160 174096919 -15182635 - L1MEc LINE L1 -5481 915 53 233 246 18 0 chr6 174097078 174097135 -15182419 - MIR SINE MIR -188 74 17 213 39 0 0 chr6 174097817 174097843 -15181711 + (TTCTCC)n Simple_repeat Simple_repeat 3 28 0 2483 83 0 0 chr6 174098346 174098646 -15180908 + AluSx SINE Alu 4 303 -9 683 239 172 14 chr6 174099069 174099278 -15180276 - MIR SINE MIR -10 252 11 2315 111 10 0 chr6 174100216 174100523 -15179031 - AluSx SINE Alu -2 310 1 225 0 0 0 chr6 174102803 174102828 -15176726 + (TG)n Simple_repeat Simple_repeat 2 26 0 2407 103 0 0 chr6 174103292 174103604 -15175950 - AluSx SINE Alu 0 312 1 189 0 0 0 chr6 174103660 174103681 -15175873 + (A)n Simple_repeat Simple_repeat 1 21 0 2295 177 82 3 chr6 174104084 174104656 -15174898 - LTR51 LTR ERV1 0 671 1 262 266 85 51 chr6 174104661 174104838 -15174716 + L1MC/D LINE L1 5712 5894 -1914 1727 169 139 18 chr6 174104946 174105385 -15174169 + LTR54B LTR ERV1 5 496 -2 494 213 174 26 chr6 174106258 174106413 -15173141 - MER21B LTR ERV1 -14 849 672 2460 185 83 23 chr6 174106416 174106713 -15172841 - MER21B LTR ERV1 -294 569 226 2187 98 0 27 chr6 174106713 174107010 -15172544 - AluSq SINE Alu -24 289 1 2460 185 83 23 chr6 174107010 174107232 -15172322 - MER21B LTR ERV1 -637 226 19 403 208 0 73 chr6 174107254 174107350 -15172204 - MER21B LTR ERV1 -773 90 2 248 345 0 0 chr6 174108240 174108327 -15171227 + GA-rich Low_complexity Low_complexity 2 88 0 2218 69 0 7 chr6 174108701 174108978 -15170576 + AluY SINE Alu 17 291 -20 1477 159 25 141 chr6 174108978 174109411 -15170143 - L1MA9 LINE L1 -39 6273 5891 2655 200 13 14 chr6 174109411 174109601 -15169953 - L1MA9 LINE L1 -743 5403 5214 7674 47 29 0 chr6 174109601 174110473 -15169081 - MER11D LTR ERVK 0 897 1 2655 200 13 14 chr6 174110473 174110832 -15168722 - L1MA9 LINE L1 -932 5214 4855 300 244 118 16 chr6 174111594 174111721 -15167833 - MIR SINE MIR -14 248 109 2131 127 0 3 chr6 174111862 174112162 -15167392 - AluSx SINE Alu -13 299 1 321 271 65 96 chr6 174112857 174113056 -15166498 + MIR3 SINE MIR 10 202 -6 2101 102 14 7 chr6 174113348 174113642 -15165912 + AluSg SINE Alu 1 296 -14 1145 83 7 0 chr6 174113774 174113919 -15165635 + AluSc SINE Alu 150 295 -14 381 268 73 24 chr6 174114782 174114946 -15164608 - MARNA DNA Mariner -361 225 54 2286 80 0 14 chr6 174116465 174116778 -15162776 - AluSg SINE Alu 0 309 1 445 210 406 9 chr6 174118327 174118556 -15160998 + MER5C DNA MER1_type 1 320 -4 1857 88 73 0 chr6 174120046 174120339 -15159215 + AluY SINE Alu 2 313 0 233 304 43 0 chr6 174120749 174120818 -15158736 - MIR SINE MIR -98 164 93 841 204 87 23 chr6 174122483 174122695 -15156859 - AluJb SINE Alu 0 325 103 6253 213 75 35 chr6 174122715 174123658 -15155896 - L1ME1 LINE L1 -18 6646 5742 1990 143 0 7 chr6 174123658 174123966 -15155588 - AluJb SINE Alu 0 312 7 6253 213 75 35 chr6 174123966 174124698 -15154856 - L1ME1 LINE L1 -922 5742 5040 2036 99 6 117 chr6 174124698 174125031 -15154523 + AluSx SINE Alu 1 296 -6 6253 213 75 35 chr6 174125031 174125217 -15154337 - L1ME1 LINE L1 -1624 5040 4863 2588 64 0 0 chr6 174125217 174125528 -15154026 - AluY SINE Alu 0 311 1 6253 213 75 35 chr6 174125528 174126758 -15152796 - L1ME1 LINE L1 -1801 4863 3369 2147 149 21 0 chr6 174126765 174127093 -15152461 + MER2 DNA MER2_type 10 344 -1 3044 228 49 16 chr6 174127096 174128387 -15151167 - L1ME1 LINE L1 -3277 3367 2068 1498 237 82 51 chr6 174128488 174129148 -15150406 - L1ME1 LINE L1 -4965 1577 991 261 0 0 0 chr6 174129148 174129177 -15150377 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1498 237 82 51 chr6 174129177 174129257 -15150297 - L1ME1 LINE L1 -5551 991 915 232 269 45 0 chr6 174129766 174129833 -15149721 - L1ME1 LINE L1 -6368 174 105 186 339 77 51 chr6 174130882 174131077 -15148477 + L3b LINE CR1 1219 1418 -165 447 359 0 6 chr6 174132306 174132462 -15147092 + MIR3 SINE MIR 6 160 -48 494 268 147 22 chr6 174132511 174133089 -15146465 + L1ME3A LINE L1 4229 4970 -1176 1736 116 8 4 chr6 174133153 174133394 -15146160 + AluSx SINE Alu 44 285 -27 230 154 154 55 chr6 174133978 174134069 -15145485 + L1MC5 LINE L1 7814 7913 -48 1346 287 109 13 chr6 174134088 174134908 -15144646 + L1ME3A LINE L1 4981 5905 -257 1629 177 44 49 chr6 174134987 174135354 -15144200 - MLT1A1 LTR MaLR 0 365 1 302 281 20 77 chr6 174135393 174135589 -15143965 + L1ME3A LINE L1 5978 6162 -8 1948 167 3 0 chr6 174135694 174135999 -15143555 + AluJb SINE Alu 1 306 -6 1307 40 0 0 chr6 174136913 174137063 -15142491 - AluY SINE Alu -4 307 158 207 0 0 0 chr6 174137125 174137148 -15142406 + (CA)n Simple_repeat Simple_repeat 2 24 0 377 281 65 32 chr6 174137158 174137343 -15142211 - L1ME4a LINE L1 -100 6021 5831 25 51 0 0 chr6 174137527 174137566 -15141988 + AT_rich Low_complexity Low_complexity 1 39 0 1219 224 9 5 chr6 174139085 174139308 -15140246 + MER58A DNA MER1_type 1 224 0 1659 139 73 93 chr6 174139643 174139987 -15139567 + MER1B DNA MER1_type 1 337 0 267 302 58 0 chr6 174140721 174140807 -15138747 - MIR3 SINE MIR -2 206 116 324 293 146 30 chr6 174140908 174141072 -15138482 + MIR SINE MIR 5 187 -75 2048 145 3 6 chr6 174141778 174142089 -15137465 + AluJb SINE Alu 1 310 -2 1309 167 0 31 chr6 174142285 174142507 -15137047 + AluJo SINE Alu 87 301 -11 233 222 189 0 chr6 174143362 174143452 -15136102 + U6 snRNA snRNA 1 107 0 534 335 152 42 chr6 174143502 174143976 -15135578 + L1MC4a LINE L1 6063 6588 -1220 312 244 114 24 chr6 174143993 174144116 -15135438 + L1MC5 LINE L1 6612 6745 -1216 1239 254 111 48 chr6 174144141 174144807 -15134747 + L1MC5 LINE L1 6864 7571 -390 301 266 227 35 chr6 174144859 174145088 -15134466 + L1MC5 LINE L1 7664 7936 -25 1962 123 65 0 chr6 174145439 174145715 -15133839 + AluJb SINE Alu 1 294 -18 368 324 56 0 chr6 174145814 174145956 -15133598 + MIR SINE MIR 92 241 -21 22 0 0 0 chr6 174146067 174146089 -15133465 + AT_rich Low_complexity Low_complexity 1 22 0 2098 115 11 0 chr6 174149607 174149911 -15129643 - AluSx SINE Alu 0 307 1 325 317 69 10 chr6 174151401 174151502 -15128052 - L2 LINE L2 -5 3267 3161 375 213 0 53 chr6 174154576 174154670 -15124884 - LTR40b LTR ERVL -16 446 358 1825 124 64 11 chr6 174154878 174155161 -15124393 - AluSx SINE Alu -14 298 1 1311 234 97 25 chr6 174155330 174155761 -15123793 + LTR40c LTR ERVL 3 464 -1 587 218 259 0 chr6 174156480 174156654 -15122900 + MER20 DNA MER1_type 1 219 0 230 239 44 44 chr6 174157438 174157551 -15122003 - L1MC4 LINE L1 -971 7071 6959 1802 157 31 3 chr6 174157782 174158107 -15121447 - L1MB3 LINE L1 0 6183 5850 8375 128 44 10 chr6 174158205 174160836 -15118718 + L1MA2 LINE L1 3582 6304 0 570 195 88 21 chr6 174160962 174161240 -15118314 + MLT1A1 LTR MaLR 2 348 -17 377 341 96 49 chr6 174161629 174161728 -15117826 + L2 LINE L2 2136 2229 -1085 2235 102 0 3 chr6 174161728 174162022 -15117532 - AluSx SINE Alu -19 293 1 377 341 96 49 chr6 174162022 174162453 -15117101 + L2 LINE L2 2229 2691 -623 1809 150 19 22 chr6 174162541 174162854 -15116700 - AluJb SINE Alu 0 312 1 2156 128 0 3 chr6 174164549 174164847 -15114707 + AluSx SINE Alu 1 297 -15 240 204 0 0 chr6 174164957 174165011 -15114543 + L1MC4a LINE L1 7206 7259 -549 2219 131 0 0 chr6 174165084 174165382 -15114172 - AluSx SINE Alu -14 298 1 1947 167 0 6 chr6 174165662 174165973 -15113581 + AluJo SINE Alu 1 309 -3 617 189 81 0 chr6 174166161 174166309 -15113245 - L1MEc LINE L1 -4123 2273 2114 4087 244 67 34 chr6 174166331 174166520 -15113034 - L1MEc LINE L1 -4340 2056 1875 2389 65 0 39 chr6 174166520 174166828 -15112726 - AluY SINE Alu -15 296 1 4087 244 67 34 chr6 174166828 174167080 -15112474 - L1MEc LINE L1 -4521 1875 1633 1834 134 33 42 chr6 174167080 174167386 -15112168 - AluJo SINE Alu -9 303 1 4087 244 67 34 chr6 174167386 174167510 -15112044 - L1MEc LINE L1 -4763 1633 1515 2414 97 0 0 chr6 174167510 174167808 -15111746 - AluY SINE Alu -13 298 1 4087 244 67 34 chr6 174167808 174168854 -15110700 - L1MEc LINE L1 -4881 1515 390 479 66 13 0 chr6 174168894 174168970 -15110584 + (CA)n Simple_repeat Simple_repeat 2 78 0 1861 166 65 6 chr6 174168979 174169316 -15110238 + MLT1A1 LTR MaLR 3 359 -6 204 111 0 0 chr6 174169319 174169355 -15110199 + (TC)n Simple_repeat Simple_repeat 1 36 0 926 271 32 18 chr6 174169355 174169695 -15109859 - L1MEc LINE L1 -6013 383 39 2122 135 3 0 chr6 174169704 174170001 -15109553 - AluSx SINE Alu -1 311 14 308 259 25 44 chr6 174170385 174170538 -15109016 + MLT1I LTR MaLR 304 406 -3 1787 171 13 7 chr6 174171075 174171385 -15108169 - AluJb SINE Alu 0 312 1 2075 119 0 39 chr6 174171592 174171903 -15107651 + AluSx SINE Alu 1 299 -13 2419 105 0 3 chr6 174172705 174173045 -15106509 - AluSx SINE Alu 0 339 1 1725 156 62 0 chr6 174173615 174173890 -15105664 + AluJb SINE Alu 1 292 -20 2368 116 0 0 chr6 174173893 174174204 -15105350 + AluSx SINE Alu 1 311 -1 463 253 118 102 chr6 174174612 174174955 -15104599 + MLT1L LTR MaLR 202 553 -62 2385 97 3 3 chr6 174174955 174175265 -15104289 - AluSq SINE Alu 0 313 4 463 253 118 102 chr6 174175265 174175321 -15104233 + MLT1L LTR MaLR 553 607 -8 266 298 54 42 chr6 174175551 174175719 -15103835 - L3 LINE CR1 -70 1507 1338 1105 103 0 52 chr6 174177198 174177372 -15102182 - L1PA8 LINE L1 0 6172 6008 973 71 0 0 chr6 174177590 174177717 -15101837 - L1PA7 LINE L1 0 6154 6028 254 319 0 33 chr6 174177777 174177868 -15101686 - LTR49-int LTR ERV1 -3917 2414 2327 2333 96 7 0 chr6 174177892 174178195 -15101359 - AluSx SINE Alu -6 306 2 573 224 19 19 chr6 174178254 174178415 -15101139 - LTR49-int LTR ERV1 -7048 489 329 * 673 277 49 82 chr6 174178386 174178751 -15100803 - LTR49-int LTR ERV1 -4089 2242 1890 768 92 17 50 chr6 174178908 174179027 -15100527 - AluSq/x SINE Alu -197 116 2 2267 121 0 3 chr6 174179458 174179765 -15099789 - AluSx SINE Alu 0 312 7 1114 275 42 3 chr6 174179869 174180225 -15099329 + L2 LINE L2 1860 2229 -1085 851 173 26 0 chr6 174180228 174180384 -15099170 + MER95 LTR ERV 11 170 -261 257 248 70 70 chr6 174180383 174180512 -15099042 + MER95 LTR ERV 303 431 0 * 1429 255 142 22 chr6 174180512 174181435 -15098119 + L2 LINE L2 2224 3309 -4 609 255 102 98 chr6 174181528 174181773 -15097781 - L2 LINE L2 0 3313 3071 2107 149 10 59 chr6 174181773 174182021 -15097533 - MLT1B LTR MaLR 0 390 131 1986 152 3 7 chr6 174182021 174182331 -15097223 - AluJo SINE Alu -3 309 1 1910 160 3 10 chr6 174182331 174182631 -15096923 - AluJo SINE Alu -13 299 2 2107 149 10 59 chr6 174182631 174182790 -15096764 - MLT1B LTR MaLR -257 133 2 609 255 102 98 chr6 174182790 174182983 -15096571 - L2 LINE L2 -242 3071 2873 195 258 196 21 chr6 174184179 174184276 -15095278 + L2 LINE L2 2927 3040 -273 335 192 110 0 chr6 174184276 174184349 -15095205 + MSTB LTR MaLR 95 175 -251 998 206 97 86 chr6 174184692 174184713 -15094841 - MLT1A2 LTR MaLR 0 374 355 2457 166 32 0 chr6 174184713 174185124 -15094430 + MSTB LTR MaLR 1 424 -2 998 206 97 86 chr6 174185124 174185295 -15094259 - MLT1A2 LTR MaLR -19 355 174 2305 121 0 6 chr6 174185295 174185608 -15093946 - AluSx SINE Alu -1 311 1 998 206 97 86 chr6 174185608 174185764 -15093790 - MLT1A2 LTR MaLR -200 174 21 520 238 67 12 chr6 174186284 174186448 -15093106 + MER104 DNA Tc2 1 173 -7 184 263 0 0 chr6 174186715 174186753 -15092801 - L2 LINE L2 -208 3064 3027 28 91 0 0 chr6 174187980 174188057 -15091497 + GC_rich Low_complexity Low_complexity 1 77 0 212 167 0 0 chr6 174188087 174188123 -15091431 + GA-rich Low_complexity Low_complexity 2 37 0 600 211 60 0 chr6 174188993 174189126 -15090428 - MIR SINE MIR -39 223 83 1805 166 0 39 chr6 174190121 174190429 -15089125 - AluJb SINE Alu -16 296 1 2130 121 3 16 chr6 174190686 174190993 -15088561 - AluSq SINE Alu -10 303 1 2122 113 20 3 chr6 174192631 174192924 -15086630 - AluSx SINE Alu -14 298 1 228 287 85 11 chr6 174193167 174193261 -15086293 - L1MC5 LINE L1 -55 7906 7806 862 118 66 88 chr6 174193388 174193417 -15086137 - L1MA7 LINE L1 0 6291 6263 2061 118 0 0 chr6 174193417 174193705 -15085849 - AluSx SINE Alu -24 288 1 862 118 66 88 chr6 174193705 174193810 -15085744 - L1MA7 LINE L1 -28 6263 6161 2235 107 0 3 chr6 174193810 174194120 -15085434 - AluSx SINE Alu -3 309 1 862 118 66 88 chr6 174194120 174194212 -15085342 - L1MA7 LINE L1 -130 6161 6069 247 296 69 57 chr6 174194389 174194548 -15085006 + MER115 DNA AcHobo 71 231 -462 718 216 28 34 chr6 174194756 174194932 -15084622 + MER115 DNA AcHobo 519 693 0 686 240 69 6 chr6 174195614 174195789 -15083765 - MIR SINE MIR -1 261 76 360 0 0 0 chr6 174195846 174195886 -15083668 + (TA)n Simple_repeat Simple_repeat 2 41 0 364 196 120 0 chr6 174197770 174197862 -15081692 - MER5A DNA MER1_type -83 106 4 282 321 113 25 chr6 174197873 174198032 -15081522 + MIR3 SINE MIR 29 201 -7 5272 63 20 60 chr6 174198403 174198822 -15080732 - L1MA2 LINE L1 0 6304 5929 2078 79 64 0 chr6 174198822 174199102 -15080452 - AluSx SINE Alu 0 312 15 5272 63 20 60 chr6 174199102 174199461 -15080093 - L1MA2 LINE L1 -375 5929 5557 2177 120 0 6 chr6 174199535 174200087 -15079467 - L1MA2 LINE L1 -733 5569 5020 225 0 0 0 chr6 174200129 174200154 -15079400 + (T)n Simple_repeat Simple_repeat 1 25 0 2287 76 0 19 chr6 174200220 174200537 -15079017 - AluY SINE Alu 0 311 1 376 331 155 18 chr6 174202206 174202484 -15077070 + L1M4 LINE L1 4302 4617 -1529 435 328 45 42 chr6 174202537 174202869 -15076685 + L2 LINE L2 2368 2700 -614 2464 152 49 2 chr6 174202988 174203397 -15076157 + MSTA LTR MaLR 1 428 0 1718 163 119 93 chr6 174203634 174204087 -15075467 + MLT1C LTR MaLR 3 467 0 579 200 59 0 chr6 174205183 174205318 -15074236 - L1ME3A LINE L1 -8 6162 6020 435 247 24 71 chr6 174205343 174205598 -15073956 + L1M4 LINE L1 5133 5375 -771 342 0 0 0 chr6 174206482 174206520 -15073034 + (T)n Simple_repeat Simple_repeat 1 38 0 830 300 230 17 chr6 174207463 174207804 -15071750 + L2 LINE L2 1052 1319 -1995 2342 65 7 10 chr6 174207804 174208114 -15071440 - AluSq SINE Alu -4 309 1 830 300 230 17 chr6 174208114 174208489 -15071065 + L2 LINE L2 1319 1921 -1393 244 268 37 37 chr6 174208565 174208647 -15070907 + L2 LINE L2 3231 3312 -1 352 182 39 0 chr6 174210281 174210358 -15069196 + L2 LINE L2 380 459 -2855 4571 109 18 2 chr6 174210565 174211190 -15068364 + MER41B LTR ERV1 1 635 0 1593 274 123 94 chr6 174211237 174211496 -15068058 + L2 LINE L2 615 865 -2449 2350 57 10 0 chr6 174211496 174211792 -15067762 - AluY SINE Alu -12 299 1 1593 274 123 94 chr6 174211792 174213055 -15066499 + L2 LINE L2 865 2090 -1224 228 111 28 0 chr6 174213055 174213091 -15066463 - Alu SINE Alu -132 170 134 2130 102 0 3 chr6 174213091 174213384 -15066170 - AluSx SINE Alu -15 297 6 1640 164 7 14 chr6 174213390 174213683 -15065871 - AluJb SINE Alu -21 291 1 1593 274 123 94 chr6 174213683 174213985 -15065569 + L2 LINE L2 2094 2537 -777 271 162 0 44 chr6 174213986 174214054 -15065500 + L1MC5 LINE L1 7626 7690 -271 1405 198 6 41 chr6 174214055 174214369 -15065185 - AluSq SINE Alu -10 303 1 704 201 0 29 chr6 174214369 174214508 -15065046 - AluJo SINE Alu -177 135 1 865 97 0 0 chr6 174214575 174214688 -15064866 - AluSq/x SINE Alu -200 113 1 421 208 10 0 chr6 174214695 174214791 -15064763 + L1MC5 LINE L1 7688 7784 -177 634 226 110 6 chr6 174214792 174214956 -15064598 - MER5A DNA MER1_type 0 189 9 195 69 0 0 chr6 174215103 174215132 -15064422 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 654 291 171 22 chr6 174215137 174215669 -15063885 + L2 LINE L2 2552 3171 -142 190 259 52 0 chr6 174215830 174215888 -15063666 + L2 LINE L2 3225 3285 -28 294 272 200 38 chr6 174216112 174216350 -15063204 + MER102b DNA MER1_type 3 298 -1130 1533 161 95 11 chr6 174216350 174216635 -15062919 - AluJo SINE Alu -3 309 1 294 272 200 38 chr6 174216635 174216686 -15062868 + MER102b DNA MER1_type 298 339 -2 899 204 40 18 chr6 174217006 174217231 -15062323 + MLT1C LTR MaLR 1 230 -237 472 291 54 36 chr6 174217570 174217793 -15061761 + MLT1C LTR MaLR 205 431 -36 1927 227 35 7 chr6 174218660 174219118 -15060436 + MLT1D LTR MaLR 33 503 -2 1865 143 17 0 chr6 174219515 174219802 -15059752 + AluSx SINE Alu 1 292 -20 2374 200 132 9 chr6 174219997 174220388 -15059166 - MER82 DNA MER2_type 0 653 167 1966 189 11 22 chr6 174220388 174220758 -15058796 + MER47A DNA MER2_type 1 366 0 2374 200 132 9 chr6 174220758 174220942 -15058612 - MER82 DNA MER2_type -486 167 7 1182 220 48 75 chr6 174221826 174222280 -15057274 + Charlie4a DNA MER1_type 1 442 -66 1248 162 52 48 chr6 174222280 174222354 -15057200 - L1MB8 LINE L1 -22 6156 6084 186 43 0 0 chr6 174222354 174222377 -15057177 + (CACCAT)n Simple_repeat Simple_repeat 2 24 0 1248 162 52 48 chr6 174222377 174222537 -15057017 - L1MB8 LINE L1 -94 6084 5918 2096 104 0 20 chr6 174222537 174222835 -15056719 - AluSx SINE Alu -20 292 1 1248 162 52 48 chr6 174222835 174222908 -15056646 - L1MB8 LINE L1 -260 5918 5847 394 221 10 48 chr6 174222908 174223012 -15056542 + Charlie4a DNA MER1_type 401 500 -8 2271 102 3 3 chr6 174223818 174224131 -15055423 - AluSp SINE Alu 0 313 1 312 329 108 0 chr6 174225072 174225230 -15054324 - MIR SINE MIR -12 250 76 249 313 92 6 chr6 174225484 174225647 -15053907 + MER104 DNA Tc2 1 177 -3 252 333 30 0 chr6 174225648 174225747 -15053807 - MIR SINE MIR -158 104 3 398 286 31 0 chr6 174227572 174227670 -15051884 - MER91C DNA MER1_type -38 102 2 347 260 58 29 chr6 174228267 174228371 -15051183 + MER63 DNA MER1_type 22 754 -82 232 305 12 0 chr6 174229003 174229085 -15050469 - MIR SINE MIR -86 122 40 1481 189 6 40 chr6 174229383 174229705 -15049849 + AluJo SINE Alu 1 311 -1 333 339 148 9 chr6 174229933 174230163 -15049391 + Charlie2 DNA MER1_type 57 318 -2464 1331 260 66 98 chr6 174230187 174230558 -15048996 + Charlie2 DNA MER1_type 1879 2260 -602 1858 109 0 35 chr6 174230558 174230843 -15048711 + AluSx SINE Alu 1 275 -37 1331 260 66 98 chr6 174230843 174231424 -15048130 + Charlie2 DNA MER1_type 2260 2800 -62 1337 225 69 14 chr6 174231424 174231770 -15047784 - MLT1A1 LTR MaLR 0 365 1 1331 260 66 98 chr6 174231770 174231804 -15047750 + Charlie2 DNA MER1_type 2800 2834 -28 1952 94 62 4 chr6 174231809 174232085 -15047469 + AluSq SINE Alu 1 292 -21 2187 107 3 0 chr6 174232086 174232386 -15047168 + AluSp SINE Alu 1 301 -12 363 44 0 0 chr6 174232388 174232433 -15047121 + (CATA)n Simple_repeat Simple_repeat 2 46 0 246 258 31 117 chr6 174232465 174232593 -15046961 + MIR SINE MIR 19 143 -65 1609 232 137 60 chr6 174232779 174233451 -15046103 - L1MC5 LINE L1 -562 7399 6676 309 318 191 16 chr6 174233515 174233886 -15045668 + L2 LINE L2 1302 1737 -1577 1862 171 0 0 chr6 174233927 174234226 -15045328 + AluJo SINE Alu 1 299 -13 885 208 205 16 chr6 174234334 174234656 -15044898 + LTR54B LTR ERV1 5 387 -111 2240 90 10 0 chr6 174234659 174234960 -15044594 - AluSq SINE Alu -9 304 1 290 288 58 50 chr6 174235142 174235281 -15044273 + MIR SINE MIR 24 163 -99 390 274 103 0 chr6 174235484 174235630 -15043924 + MIR SINE MIR 24 184 -78 242 258 31 21 chr6 174236974 174237071 -15042483 - L2 LINE L2 -210 3062 2965 624 190 158 0 chr6 174237605 174237763 -15041791 - MER5A DNA MER1_type 0 189 7 2033 118 0 50 chr6 174238465 174238788 -15040766 + AluSx SINE Alu 2 308 -4 235 330 0 11 chr6 174238810 174238898 -15040656 - MIR SINE MIR -1 261 175 699 261 43 51 chr6 174238931 174239184 -15040370 - MIR SINE MIR -8 254 4 2217 108 0 9 chr6 174239807 174240122 -15039432 + AluSx SINE Alu 1 312 0 291 253 116 0 chr6 174240156 174240251 -15039303 - MER5A DNA MER1_type -80 109 4 668 255 54 33 chr6 174241779 174242000 -15037554 + MIR SINE MIR 31 260 -2 6061 148 41 6 chr6 174243916 174245004 -15034550 - L1PA13 LINE L1 -1032 5114 3988 3894 146 62 22 chr6 174245010 174245984 -15033570 + L1PA13 LINE L1 5142 6155 -8 1268 198 129 50 chr6 174246289 174246592 -15032962 - MLT1C LTR MaLR -8 459 113 2719 46 0 0 chr6 174246592 174246897 -15032657 - AluY SINE Alu -6 305 1 1268 198 129 50 chr6 174246897 174247012 -15032542 - MLT1C LTR MaLR -354 113 8 248 248 38 17 chr6 174249356 174249597 -15029957 + (TG)n Simple_repeat Simple_repeat 1 246 0 270 266 37 96 chr6 174250275 174250474 -15029080 - MIR SINE MIR -62 146 6 1710 176 19 19 chr6 174250904 174251211 -15028343 - AluJo SINE Alu -5 307 1 645 259 72 25 chr6 174253800 174254036 -15025518 - L1MB8 LINE L1 -6 6172 5926 186 332 150 44 chr6 174254216 174254296 -15025258 - L3 LINE CR1 -6 1571 1501 2430 100 0 7 chr6 174254296 174254606 -15024948 - AluSx SINE Alu -4 308 1 186 332 150 44 chr6 174254606 174254998 -15024556 - L3 LINE CR1 -76 1501 1049 2358 112 0 10 chr6 174255129 174255442 -15024112 - AluSx SINE Alu -2 310 1 446 253 82 66 chr6 174256483 174256691 -15022863 + MIR SINE MIR 2 216 -46 2148 146 7 0 chr6 174256691 174256999 -15022555 + AluSx SINE Alu 1 310 -2 446 253 82 66 chr6 174256999 174257047 -15022507 + MIR SINE MIR 216 262 0 278 202 333 0 chr6 174257267 174257351 -15022203 - L2 LINE L2 0 3272 3161 572 259 17 0 chr6 174257704 174257878 -15021676 + MER5B DNA MER1_type 1 177 -1 615 231 26 13 chr6 174257928 174258084 -15021470 + MER63A DNA MER1_type 53 210 0 807 159 88 24 chr6 174259396 174259566 -15019988 - MER5A DNA MER1_type -8 181 1 2054 153 0 28 chr6 174260858 174261178 -15018376 + AluJb SINE Alu 1 311 -1 2337 252 112 17 chr6 174261418 174261572 -15017982 - L1MC4 LINE L1 -3 8039 7901 2315 150 47 2 chr6 174261572 174261979 -15017575 - MSTB LTR MaLR -1 425 1 2337 252 112 17 chr6 174261979 174262696 -15016858 - L1MC4 LINE L1 -141 7901 7085 226 273 0 42 chr6 174262696 174262839 -15016715 + (CCCA)n Simple_repeat Simple_repeat 1 137 0 938 183 5 5 chr6 174262880 174263471 -15016083 + (TCCA)n Simple_repeat Simple_repeat 1 591 0 738 213 0 9 chr6 174263471 174263644 -15015910 - L1MC4 LINE L1 -779 7090 6861 297 0 0 0 chr6 174264696 174264729 -15014825 + (TG)n Simple_repeat Simple_repeat 2 34 0 303 143 26 8 chr6 174265218 174265294 -15014260 + Alu SINE Alu 254 308 0 205 346 102 16 chr6 174266638 174266765 -15012789 - MIR SINE MIR -36 226 89 351 285 139 15 chr6 174267306 174267443 -15012111 - L1ME4a LINE L1 -23 6098 5945 2027 149 0 20 chr6 174267838 174268134 -15011420 + AluJo SINE Alu 3 292 -20 2512 85 0 0 chr6 174268739 174269046 -15010508 - AluSq SINE Alu -6 307 1 208 235 20 0 chr6 174271126 174271177 -15008377 + C-rich Low_complexity Low_complexity 5 56 0 398 264 0 0 chr6 174271855 174271946 -15007608 - MER82 DNA MER2_type -7 646 556 2090 187 24 46 chr6 174271972 174272431 -15007123 - MER82 DNA MER2_type -203 450 2 2392 88 0 3 chr6 174272585 174272879 -15006675 + AluSg SINE Alu 16 308 -2 2325 115 3 0 chr6 174276198 174276510 -15003044 - AluSq SINE Alu 0 313 1 27 0 0 0 chr6 174277324 174277351 -15002203 + AT_rich Low_complexity Low_complexity 1 27 0 2268 112 0 10 chr6 174280093 174280398 -14999156 + AluSx SINE Alu 2 303 -9 2120 139 7 0 chr6 174281643 174281944 -14997610 - AluSx SINE Alu -9 303 1 229 309 0 0 chr6 174281944 174281999 -14997555 + MER3 DNA MER1_type 36 90 -119 * 769 237 63 0 chr6 174281962 174282152 -14997402 - MER3 DNA MER1_type -6 203 2 256 344 30 15 chr6 174282233 174282364 -14997190 + MIR SINE MIR 6 138 -124 2133 111 0 3 chr6 174283371 174283659 -14995895 - AluSx SINE Alu -5 307 21 1105 144 12 6 chr6 174284136 174284309 -14995245 + AluSq SINE Alu 123 296 -17 1524 152 13 0 chr6 174284613 174284837 -14994717 + AluJb SINE Alu 50 276 -36 202 293 24 49 chr6 174284892 174284974 -14994580 - L2 LINE L2 -2 3270 3191 2497 80 6 10 chr6 174285636 174285949 -14993605 - AluSp SINE Alu -1 312 1 252 0 0 0 chr6 174286306 174286334 -14993220 + (A)n Simple_repeat Simple_repeat 1 28 0 285 224 86 59 chr6 174287260 174287412 -14992142 - L1ME4a LINE L1 -304 5866 5711 2453 94 0 13 chr6 174287444 174287751 -14991803 - AluSx SINE Alu -9 303 1 1880 126 69 0 chr6 174288041 174288318 -14991236 - AluSx SINE Alu -14 298 3 404 206 73 44 chr6 174288441 174288577 -14990977 - L2 LINE L2 -5 3308 3169 570 318 84 46 chr6 174288770 174288847 -14990707 - L1ME4a LINE L1 -296 5825 5752 2327 106 3 0 chr6 174288847 174289150 -14990404 + AluSx SINE Alu 1 304 -8 570 318 84 46 chr6 174289150 174289418 -14990136 - L1ME4a LINE L1 -369 5752 5467 1475 180 0 96 chr6 174290273 174290607 -14988947 - AluJo SINE Alu 0 302 1 2090 117 7 36 chr6 174290722 174290861 -14988693 + AluSx SINE Alu 5 147 -165 2447 102 0 0 chr6 174290861 174291166 -14988388 + AluSg SINE Alu 2 306 -4 2090 117 7 36 chr6 174291166 174291333 -14988221 + AluSx SINE Alu 147 302 -10 2319 106 0 0 chr6 174291593 174291886 -14987668 - AluSx SINE Alu -19 293 1 1928 124 0 25 chr6 174293176 174293459 -14986095 + AluSx SINE Alu 1 276 -36 2077 132 7 3 chr6 174293681 174293977 -14985577 - AluJb SINE Alu -15 297 1 284 344 38 12 chr6 174294308 174294468 -14985086 - MER5B DNA MER1_type -14 164 1 195 42 0 0 chr6 174296529 174296553 -14983001 + (T)n Simple_repeat Simple_repeat 1 24 0 251 125 62 21 chr6 174296608 174296656 -14982898 - L1ME LINE L1 -267 5854 5805 1342 121 70 9 chr6 174296705 174296885 -14982669 - AluJb SINE Alu 0 312 116 186 43 0 0 chr6 174296885 174296908 -14982646 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1342 121 70 9 chr6 174296908 174296942 -14982612 - AluJb SINE Alu -196 116 85 2034 156 0 6 chr6 174299189 174299503 -14980051 - AluSx SINE Alu 0 312 1 2526 68 3 0 chr6 174299694 174300002 -14979552 + AluY SINE Alu 1 309 -2 2230 139 36 47 chr6 174300021 174300126 -14979428 + L1MB7 LINE L1 5735 5840 -344 2298 98 0 7 chr6 174300126 174300431 -14979123 + AluY SINE Alu 2 304 -7 2230 139 36 47 chr6 174300431 174300771 -14978783 + L1MB7 LINE L1 5840 6175 -9 896 138 0 0 chr6 174301018 174301141 -14978413 + FLAM_C SINE Alu 2 124 -19 1599 198 38 3 chr6 174301151 174301444 -14978110 + AluJb SINE Alu 1 303 -9 2181 81 0 7 chr6 174301831 174302102 -14977452 + AluSg SINE Alu 21 289 -21 1104 173 167 75 chr6 174302889 174303224 -14976330 - MER47A DNA MER2_type 0 366 1 2481 67 0 3 chr6 174303521 174303820 -14975734 + AluSx SINE Alu 1 298 -14 2137 108 10 22 chr6 174307956 174308270 -14971284 - AluSg SINE Alu 0 310 1 1918 120 53 3 chr6 174308771 174309054 -14970500 + AluSx SINE Alu 1 297 -15 2674 58 0 0 chr6 174309122 174309431 -14970123 + AluY SINE Alu 1 309 -2 2230 139 36 47 chr6 174309450 174309555 -14969999 + L1MB7 LINE L1 5735 5840 -344 2298 98 0 7 chr6 174309555 174309860 -14969694 + AluY SINE Alu 2 304 -7 2230 139 36 47 chr6 174309860 174310200 -14969354 + L1MB7 LINE L1 5840 6175 -9 882 146 0 0 chr6 174310449 174310572 -14968982 + FLAM_C SINE Alu 2 124 -19 1599 198 38 3 chr6 174310582 174310875 -14968679 + AluJb SINE Alu 1 303 -9 2304 79 0 7 chr6 174311263 174311553 -14968001 + AluSg SINE Alu 21 308 -2 1085 176 167 75 chr6 174312323 174312658 -14966896 - MER47A DNA MER2_type 0 366 1 2481 67 0 3 chr6 174312955 174313254 -14966300 + AluSx SINE Alu 1 298 -14 492 129 32 0 chr6 174317394 174317487 -14962067 - AluSg/x SINE Alu 0 312 217 6582 58 11 32 chr6 174317610 174318496 -14961058 + SVA Other Other 519 1386 0 232 310 0 0 chr6 174319874 174319945 -14959609 + MER5A DNA MER1_type 25 95 -94 2542 78 3 0 chr6 174320162 174320471 -14959083 - AluSx SINE Alu -2 310 1 24 0 0 0 chr6 174320965 174320989 -14958565 + AT_rich Low_complexity Low_complexity 1 24 0 332 148 59 8 chr6 174321751 174321997 -14957557 + (TA)n Simple_repeat Simple_repeat 1 258 0 772 250 57 40 chr6 174322192 174322488 -14957066 + L1MC4 LINE L1 5632 5932 -1876 23 33 0 0 chr6 174322807 174322837 -14956717 + AT_rich Low_complexity Low_complexity 1 30 0 1914 143 31 3 chr6 174323500 174323794 -14955760 + AluJb SINE Alu 1 302 -10 2477 88 0 0 chr6 174323854 174324160 -14955394 - AluY SINE Alu -5 306 1 1007 206 32 32 chr6 174324265 174324512 -14955042 + Charlie4 DNA MER1_type 1 247 -1714 3541 214 42 52 chr6 174324726 174325725 -14953829 + L1MC4 LINE L1 6703 7691 -351 2299 96 3 7 chr6 174325725 174326017 -14953537 + AluSx SINE Alu 1 291 -21 3541 214 42 52 chr6 174326017 174326125 -14953429 + L1MC4 LINE L1 7691 7799 -243 2873 132 55 11 chr6 174326230 174326785 -14952769 - L1MC/D LINE L1 -604 5809 5233 483 233 108 45 chr6 174327115 174327172 -14952382 - L1M4 LINE L1 -2907 4050 3998 1930 137 3 3 chr6 174327172 174327457 -14952097 - AluJb SINE Alu -5 307 23 1929 140 7 4 chr6 174327457 174327735 -14951819 + AluSx SINE Alu 7 286 -26 483 233 108 45 chr6 174327735 174328075 -14951479 - L1M4 LINE L1 -2958 3999 3627 578 272 38 43 chr6 174328368 174328603 -14950951 - L1M4 LINE L1 -6624 235 2 * 641 253 147 26 chr6 174328599 174328911 -14950643 - L1MC/D LINE L1 -1319 4896 4547 242 289 175 26 chr6 174328913 174329141 -14950413 - L1MC4 LINE L1 0 8042 7781 431 235 124 39 chr6 174329274 174329427 -14950127 - MER104 DNA Tc2 -14 166 1 1692 259 63 28 chr6 174329429 174330140 -14949414 - L1MC/D LINE L1 -1890 4325 3590 253 274 153 39 chr6 174330269 174330524 -14949030 - L1MC/D LINE L1 -2605 3610 3327 * 703 274 94 37 chr6 174330519 174331450 -14948104 - L1MC/D LINE L1 -4013 2383 1342 2098 112 22 0 chr6 174331502 174331779 -14947775 + AluSx SINE Alu 1 283 -29 24 0 0 0 chr6 174331779 174331803 -14947751 + AT_rich Low_complexity Low_complexity 1 24 0 2294 106 10 6 chr6 174332083 174332394 -14947160 + AluSq SINE Alu 1 312 -1 24 100 0 0 chr6 174332549 174332629 -14946925 + AT_rich Low_complexity Low_complexity 1 80 0 260 273 11 45 chr6 174332759 174332847 -14946707 - HAL1b LINE L1 -766 582 498 372 214 46 53 chr6 174332920 174333051 -14946503 - HAL1b LINE L1 -694 654 525 2102 90 16 58 chr6 174333149 174333459 -14946095 - AluSg SINE Alu -13 297 1 369 183 0 0 chr6 174333606 174333666 -14945888 - Tigger5 DNA MER2_type 0 2323 2264 331 179 0 18 chr6 174333687 174333743 -14945811 - Tigger5 DNA MER2_type -2268 55 1 2506 77 0 3 chr6 174334017 174334327 -14945227 + AluSc SINE Alu 1 309 0 2840 139 64 26 chr6 174334560 174335061 -14944493 + L1MB7 LINE L1 5588 6115 -69 1526 171 57 37 chr6 174335061 174335359 -14944195 + AluJo SINE Alu 3 306 -6 2840 139 64 26 chr6 174335359 174335432 -14944122 + L1MB7 LINE L1 6115 6184 0 1987 145 0 10 chr6 174337079 174337382 -14942172 + AluJo SINE Alu 1 300 -12 227 276 106 32 chr6 174338632 174338755 -14940799 + HAL1 LINE L1 1 132 -2375 375 303 88 37 chr6 174338851 174339337 -14940217 + HAL1 LINE L1 745 1255 -1252 25 65 0 0 chr6 174339484 174339530 -14940024 + AT_rich Low_complexity Low_complexity 1 46 0 505 163 0 0 chr6 174341405 174341485 -14938069 - AluJ/FLAM SINE Alu -230 82 3 205 368 69 0 chr6 174342124 174342211 -14937343 - MIR3 SINE MIR -48 160 68 1066 187 0 6 chr6 174343415 174343597 -14935957 + AluJb SINE Alu 132 312 0 21 82 0 0 chr6 174346081 174346130 -14933424 + AT_rich Low_complexity Low_complexity 1 49 0 35 0 0 0 chr6 174346292 174346327 -14933227 + AT_rich Low_complexity Low_complexity 1 35 0 278 321 48 0 chr6 174346329 174346413 -14933141 + MIR SINE MIR 21 108 -154 32 26 0 0 chr6 174346655 174346694 -14932860 + AT_rich Low_complexity Low_complexity 1 39 0 2208 177 0 6 chr6 174346916 174347266 -14932288 + MER7A DNA MER2_type 1 346 0 2187 105 7 0 chr6 174347449 174347744 -14931810 + AluSx SINE Alu 1 297 -15 401 215 192 29 chr6 174347772 174347944 -14931610 - L1ME2 LINE L1 -241 5923 5724 917 321 132 25 chr6 174348376 174349051 -14930503 - L2 LINE L2 -1876 1438 692 442 292 13 26 chr6 174349169 174349395 -14930159 + L1M4 LINE L1 1401 1623 -4919 616 84 32 0 chr6 174349402 174349497 -14930057 + L1MA8 LINE L1 6097 6194 -97 1100 248 115 20 chr6 174349504 174349698 -14929856 + L1M4 LINE L1 1788 1962 -4863 411 21 0 0 chr6 174349698 174349746 -14929808 + (CA)n Simple_repeat Simple_repeat 2 49 0 1100 248 115 20 chr6 174349746 174350002 -14929552 + L1M4 LINE L1 1962 2281 -4544 751 173 98 83 chr6 174350018 174350109 -14929445 + MSTD LTR MaLR 3 91 -305 647 126 13 80 chr6 174350109 174350260 -14929294 + L1MA4 LINE L1 6153 6293 -7 751 173 98 83 chr6 174350260 174350508 -14929046 + MSTD LTR MaLR 91 396 0 738 212 0 0 chr6 174350533 174350665 -14928889 + FLAM_A SINE Alu 2 133 0 724 195 172 21 chr6 174350665 174351011 -14928543 + L1M4 LINE L1 2311 2669 -3975 1670 258 123 31 chr6 174351023 174351658 -14927896 + L1MC4 LINE L1 6628 7320 -722 1622 161 15 15 chr6 174351742 174352015 -14927539 + AluJo SINE Alu 25 297 -15 286 345 28 35 chr6 174353547 174353692 -14925862 + MER5A DNA MER1_type 25 168 -21 2513 78 3 0 chr6 174353835 174354143 -14925411 - AluSx SINE Alu -3 309 1 24 0 0 0 chr6 174354637 174354661 -14924893 + AT_rich Low_complexity Low_complexity 1 24 0 311 140 53 13 chr6 174355423 174355573 -14923981 + (TA)n Simple_repeat Simple_repeat 2 157 0 42 48 0 0 chr6 174355589 174355652 -14923902 + AT_rich Low_complexity Low_complexity 1 63 0 992 268 151 38 chr6 174355652 174356155 -14923399 + L1MC4a LINE L1 5373 5932 -1876 23 33 0 0 chr6 174356474 174356504 -14923050 + AT_rich Low_complexity Low_complexity 1 30 0 1884 143 31 3 chr6 174357167 174357461 -14922093 + AluJb SINE Alu 1 302 -10 2410 55 7 19 chr6 174357521 174357831 -14921723 - AluYa5 SINE Alu -5 306 1 202 351 46 53 chr6 174358171 174358302 -14921252 - L3 LINE CR1 -46 1531 1402 251 100 100 0 chr6 174358399 174358439 -14921115 + MSTC LTR MaLR 1 44 -384 235 167 21 0 chr6 174358568 174358616 -14920938 + L1MC4 LINE L1 7770 7818 -224 295 220 85 51 chr6 174358722 174358766 -14920788 + L1MC4 LINE L1 7921 7962 -80 2305 89 0 3 chr6 174358766 174359057 -14920497 - AluY SINE Alu -21 290 1 295 220 85 51 chr6 174359057 174359130 -14920424 + L1MC4 LINE L1 7962 8042 0 873 154 150 13 chr6 174359131 174359364 -14920190 + Charlie4 DNA MER1_type 1694 1958 -3 1113 168 6 0 chr6 174359433 174359606 -14919948 - FAM SINE Alu -1 174 1 2329 93 0 0 chr6 174359825 174360125 -14919429 + AluSc SINE Alu 1 300 -9 40 0 0 0 chr6 174360166 174360206 -14919348 + AT_rich Low_complexity Low_complexity 1 40 0 185 0 40 0 chr6 174360310 174360335 -14919219 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1871 139 3 17 chr6 174360541 174360835 -14918719 + AluJb SINE Alu 1 290 -22 2289 101 0 10 chr6 174361098 174361405 -14918149 + AluSx SINE Alu 1 304 -8 942 160 13 78 chr6 174361775 174361849 -14917705 + L1MB7 LINE L1 5086 5163 -983 1865 162 10 10 chr6 174361849 174362152 -14917402 - AluJo SINE Alu -9 303 1 942 160 13 78 chr6 174362152 174362308 -14917246 + L1MB7 LINE L1 5163 5301 -845 368 201 3 5 chr6 174362603 174362737 -14916817 + L1M4 LINE L1 5228 5362 -818 1068 145 12 12 chr6 174362772 174362938 -14916616 + FAM SINE Alu 10 175 -10 1210 207 144 14 chr6 174362941 174363289 -14916265 + L1M4 LINE L1 5311 5703 -2339 3942 189 82 8 chr6 174363303 174364095 -14915459 + MER21B LTR ERV1 12 862 -1 248 89 0 89 chr6 174364129 174364174 -14915380 + L1M4 LINE L1 5693 5733 -451 2673 146 33 9 chr6 174364174 174364626 -14914928 + L1MB7 LINE L1 5694 6156 -28 443 262 49 0 chr6 174364763 174364885 -14914669 + L1MC3 LINE L1 6703 6830 -955 1797 162 0 34 chr6 174365335 174365656 -14913898 - AluJo SINE Alu -2 310 1 2433 74 0 0 chr6 174365663 174365959 -14913595 - AluSc SINE Alu -13 296 1 196 313 16 0 chr6 174366167 174366231 -14913323 + L2 LINE L2 3249 3313 0 225 0 0 0 chr6 174366489 174366514 -14913040 + (TC)n Simple_repeat Simple_repeat 2 26 0 242 114 0 23 chr6 174366514 174366558 -14912996 + (TA)n Simple_repeat Simple_repeat 2 44 0 1295 171 43 0 chr6 174366951 174367161 -14912393 + MER20 DNA MER1_type 1 219 0 1944 136 7 0 chr6 174368119 174368405 -14911149 + AluSx SINE Alu 1 288 -24 32 0 0 0 chr6 174369456 174369488 -14910066 + AT_rich Low_complexity Low_complexity 1 32 0 1133 239 38 35 chr6 174369685 174370112 -14909442 + L1MC/D LINE L1 4665 5092 -1054 733 221 8 0 chr6 174370120 174370251 -14909303 - AluJo SINE Alu -178 134 3 1294 218 66 37 chr6 174370257 174370745 -14908809 + L1MC/D LINE L1 5100 5608 -634 8104 54 16 3 chr6 174370847 174371948 -14907606 - L1P LINE L1 -2615 3531 2416 13843 45 2 13 chr6 174372048 174373766 -14905788 - L1P LINE L1 -743 5403 3704 227 342 43 8 chr6 174373942 174374059 -14905495 + MIR SINE MIR 33 153 -109 1165 147 132 0 chr6 174374110 174374307 -14905247 + LTR35 LTR ERV1 64 286 -332 6269 169 28 44 chr6 174374309 174375561 -14903993 + L1P LINE L1 11 1242 -4904 1722 146 11 18 chr6 174375661 174375936 -14903618 - AluSx SINE Alu -39 273 1 21 36 0 0 chr6 174376036 174376064 -14903490 + AT_rich Low_complexity Low_complexity 1 28 0 2453 75 0 7 chr6 174376513 174376821 -14902733 - AluY SINE Alu -5 306 1 1214 180 9 5 chr6 174377254 174377465 -14902089 - AluJb SINE Alu -14 298 87 273 234 0 65 chr6 174377794 174377901 -14901653 + C-rich Low_complexity Low_complexity 4 103 0 1040 224 24 31 chr6 174378233 174378487 -14901067 - MIR SINE MIR -10 252 1 1033 191 37 80 chr6 174378595 174378888 -14900666 - L1ME2 LINE L1 -9 6155 5876 2500 64 7 0 chr6 174378888 174379184 -14900370 - AluY SINE Alu -13 298 1 1033 191 37 80 chr6 174379184 174379215 -14900339 - L1ME2 LINE L1 -288 5876 5845 1169 109 0 0 chr6 174379285 174379441 -14900113 - AluSx SINE Alu -14 298 143 692 93 0 0 chr6 174379441 174379527 -14900027 - AluSx SINE Alu -225 87 2 812 200 11 23 chr6 174379528 174379610 -14899944 - L1ME2 LINE L1 -411 5753 5672 1821 157 13 16 chr6 174379610 174379916 -14899638 - AluJb SINE Alu -7 305 1 812 200 11 23 chr6 174379916 174380008 -14899546 - L1ME2 LINE L1 -492 5672 5581 * 1661 192 41 6 chr6 174379995 174380008 -14899546 + L1 LINE L1 3949 3960 -2186 2251 105 7 0 chr6 174380008 174380314 -14899240 + AluY SINE Alu 1 308 -3 1661 192 41 6 chr6 174380314 174380638 -14898916 + L1 LINE L1 3960 4298 -1848 1972 140 13 7 chr6 174381078 174381386 -14898168 - AluSg SINE Alu 0 310 1 6637 62 14 52 chr6 174382695 174383686 -14895868 - SVA Other Other 0 1386 433 771 113 6 51 chr6 174383811 174383988 -14895566 - SVA Other Other -527 859 691 241 69 0 0 chr6 174384456 174384485 -14895069 + (A)n Simple_repeat Simple_repeat 1 29 0 393 280 60 56 chr6 174384506 174384774 -14894780 - L1MC4 LINE L1 -72 7970 7702 2286 110 0 0 chr6 174385138 174385429 -14894125 - AluSx SINE Alu -21 291 1 2370 74 0 10 chr6 174385679 174385978 -14893576 - AluY SINE Alu -15 296 1 4717 127 42 84 chr6 174387581 174387785 -14891769 + MER4D LTR ERV1 1 212 -660 2075 108 14 0 chr6 174387785 174388082 -14891472 + AluY SINE Alu 1 301 -10 4717 127 42 84 chr6 174388082 174388353 -14891201 + MER4D LTR ERV1 212 493 -379 2151 125 0 3 chr6 174388353 174388666 -14890888 + AluSq SINE Alu 1 312 -1 4717 127 42 84 chr6 174388666 174389100 -14890454 + MER4D LTR ERV1 493 872 0 307 295 9 0 chr6 174389431 174389536 -14890018 + MER113 DNA MER1_type? 1 106 -415 1546 181 58 7 chr6 174389631 174389923 -14889631 - AluJb SINE Alu -5 307 1 1988 144 7 3 chr6 174390089 174390388 -14889166 - AluJb SINE Alu -11 301 2 24 0 0 0 chr6 174390477 174390501 -14889053 + AT_rich Low_complexity Low_complexity 1 24 0 185 298 18 0 chr6 174391065 174391122 -14888432 + L2 LINE L2 3252 3309 -4 6506 115 76 53 chr6 174391608 174392142 -14887412 + Tigger3b DNA MER2_type 1 522 -2506 812 172 6 70 chr6 174392142 174392299 -14887255 + FRAM SINE Alu 5 151 -15 2294 91 0 14 chr6 174392301 174392597 -14886957 - AluY SINE Alu -19 292 1 6506 115 76 53 chr6 174392597 174392793 -14886761 + Tigger3b DNA MER2_type 522 712 -2316 753 194 0 8 chr6 174392793 174392922 -14886632 - FLAM_A SINE Alu -4 129 2 6506 115 76 53 chr6 174392922 174392969 -14886585 + Tigger3b DNA MER2_type 712 756 -2272 750 212 0 15 chr6 174392969 174393101 -14886453 + FLAM_A SINE Alu 1 130 -3 2084 125 0 0 chr6 174393105 174393401 -14886153 + AluSx SINE Alu 1 296 -16 6506 115 76 53 chr6 174393401 174393817 -14885737 + Tigger3b DNA MER2_type 758 1231 0 201 138 0 0 chr6 174393817 174393846 -14885708 + (CATATA)n Simple_repeat Simple_repeat 5 33 0 229 217 58 0 chr6 174393869 174393938 -14885616 - L1ME3A LINE L1 -92 6078 6006 1128 258 73 38 chr6 174394035 174394461 -14885093 - L1ME3A LINE L1 -208 5962 5522 1919 160 3 7 chr6 174394720 174394855 -14884699 + AluSx SINE Alu 1 135 -177 240 35 0 0 chr6 174394855 174394884 -14884670 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1919 160 3 7 chr6 174394884 174395055 -14884499 + AluSx SINE Alu 135 306 -6 181 337 101 22 chr6 174396175 174396264 -14883290 - MIR SINE MIR -147 115 20 2275 101 0 13 chr6 174396903 174397211 -14882343 + AluSx SINE Alu 1 304 -8 267 325 131 6 chr6 174397288 174397448 -14882106 + MLT1J LTR MaLR 1 180 -331 491 127 32 23 chr6 174397766 174398056 -14881498 + (TA)n Simple_repeat Simple_repeat 1 292 0 2137 117 4 0 chr6 174398056 174398337 -14881217 - AluSq SINE Alu -31 282 1 482 191 35 43 chr6 174398511 174398626 -14880928 + L2 LINE L2 3200 3313 0 237 314 0 0 chr6 174398627 174398697 -14880857 - MIR3 SINE MIR -41 167 98 444 318 149 14 chr6 174398698 174398912 -14880642 - L2 LINE L2 0 3272 3030 353 302 38 9 chr6 174398949 174399055 -14880499 + L2 LINE L2 3159 3267 -5 212 276 0 0 chr6 174400135 174400193 -14879361 + T-rich Low_complexity Low_complexity 1 58 0 976 161 18 6 chr6 174400524 174400735 -14878819 + AluJb SINE Alu 113 325 0 1479 149 130 19 chr6 174400791 174401060 -14878494 + AluJo SINE Alu 4 302 0 855 247 6 0 chr6 174401930 174402088 -14877466 - AluJb SINE Alu -20 292 134 2379 101 0 0 chr6 174402098 174402405 -14877149 - AluSc SINE Alu -1 308 2 2150 114 0 3 chr6 174404325 174404624 -14874930 - AluSc SINE Alu -11 298 1 565 175 19 0 chr6 174404624 174404727 -14874827 - L1MD3 LINE L1 -106 7889 7785 2049 133 0 0 chr6 174405704 174406025 -14873529 + AluSq SINE Alu 2 322 0 1621 183 63 112 chr6 174406028 174406369 -14873185 - L1MDa LINE L1 -4576 1964 1657 224 0 65 0 chr6 174406369 174406400 -14873154 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1621 183 63 112 chr6 174406400 174406595 -14872959 - L1MDa LINE L1 -4883 1657 1454 305 222 139 28 chr6 174406595 174406648 -14872906 - L1MEc LINE L1 -4250 2146 2100 1963 131 3 10 chr6 174406648 174406953 -14872601 - AluSx SINE Alu -9 303 1 305 222 139 28 chr6 174406953 174407007 -14872547 - L1MEc LINE L1 -4296 2100 2027 25 0 0 0 chr6 174407222 174407247 -14872307 + AT_rich Low_complexity Low_complexity 1 25 0 2088 102 0 3 chr6 174407421 174407706 -14871848 + AluY SINE Alu 1 284 -27 560 77 95 0 chr6 174407709 174407933 -14871621 + (TA)n Simple_repeat Simple_repeat 1 245 0 1032 141 0 6 chr6 174407963 174408126 -14871428 + AluSg/x SINE Alu 133 294 -18 181 254 15 60 chr6 174408133 174408200 -14871354 + MIR3 SINE MIR 137 200 -8 459 249 213 62 chr6 174409213 174409257 -14870297 - L2 LINE L2 -1161 2153 2117 808 221 171 18 chr6 174409257 174409538 -14870016 - MER33 DNA MER1_type 0 324 1 459 249 213 62 chr6 174409538 174409943 -14869611 - L2 LINE L2 -1197 2117 1636 2016 99 60 18 chr6 174410407 174410691 -14868863 - AluSc SINE Alu -13 296 1 530 206 11 0 chr6 174411091 174411183 -14868371 + MER5A DNA MER1_type 14 106 -83 1811 189 75 49 chr6 174411734 174412224 -14867330 - MER41B LTR ERV1 -10 596 99 216 0 0 0 chr6 174413104 174413128 -14866426 + (TG)n Simple_repeat Simple_repeat 1 24 0 1956 259 66 46 chr6 174413232 174413971 -14865583 + L2 LINE L2 253 1006 -2308 923 221 112 31 chr6 174413974 174414268 -14865286 + L2 LINE L2 1747 2064 -1250 1306 201 89 78 chr6 174414268 174414336 -14865218 + L2 LINE L2 2290 2356 -958 800 176 8 0 chr6 174414336 174414467 -14865087 - FLAM_C SINE Alu -1 132 1 1306 201 89 78 chr6 174414467 174414846 -14864708 + L2 LINE L2 2356 2742 -572 472 258 172 27 chr6 174415297 174415483 -14864071 - MIR SINE MIR -18 244 32 2590 54 0 0 chr6 174415749 174416047 -14863507 - AluY SINE Alu -13 298 1 2258 115 0 0 chr6 174417856 174418151 -14861403 + AluSx SINE Alu 2 296 -16 580 295 80 18 chr6 174418344 174418568 -14860986 - MIR SINE MIR -24 238 1 2160 119 7 0 chr6 174418605 174418898 -14860656 - AluSg SINE Alu -15 295 1 3858 100 0 17 chr6 174418988 174419508 -14860046 - MER9 LTR ERVK 0 511 1 1300 221 33 11 chr6 174419680 174419956 -14859598 - LTR35 LTR ERV1 0 618 337 21487 80 10 15 chr6 174419956 174420569 -14858985 - L1PA7 LINE L1 -11 6143 5528 2029 64 103 32 chr6 174420569 174420851 -14858703 + AluY SINE Alu 1 302 -9 21487 80 10 15 chr6 174420851 174423899 -14855655 - L1PA7 LINE L1 -626 5528 2497 1970 126 0 4 chr6 174424035 174424312 -14855242 - AluJb SINE Alu -16 296 21 357 278 46 40 chr6 174424630 174424781 -14854773 - L2 LINE L2 -1 3312 3161 1622 168 13 26 chr6 174425501 174425804 -14853750 + AluJo SINE Alu 1 299 -13 208 193 35 53 chr6 174425948 174426005 -14853549 + MIR SINE MIR 6 61 -201 2208 190 63 71 chr6 174426018 174426593 -14852961 + MER74B LTR ERVL 53 622 0 724 246 39 0 chr6 174426593 174426772 -14852782 + MIR SINE MIR 77 262 0 593 308 102 13 chr6 174426873 174427246 -14852308 - L1MEd LINE L1 -4869 1250 845 308 234 87 92 chr6 174427294 174427478 -14852076 + MLT1H LTR MaLR 108 290 -259 550 120 68 86 chr6 174427704 174427821 -14851733 - Tigger3(Golem) DNA MER2_type -2634 395 281 464 194 0 0 chr6 174427822 174427894 -14851660 + AluJ/FLAM SINE Alu 2 73 -239 1574 174 0 0 chr6 174427916 174428191 -14851363 + AluY SINE Alu 14 288 -23 303 291 58 10 chr6 174428311 174428414 -14851140 - L2 LINE L2 -1362 1952 1845 1066 280 109 12 chr6 174428415 174428826 -14850728 + MLT1J LTR MaLR 28 478 -33 2314 71 7 13 chr6 174428855 174429163 -14850391 - AluY SINE Alu -5 306 1 778 243 70 103 chr6 174429169 174429597 -14849957 + L2 LINE L2 2211 2624 -690 495 138 128 0 chr6 174429650 174429744 -14849810 + L1MB3 LINE L1 6050 6155 -28 1369 301 43 28 chr6 174429797 174430515 -14849039 - L1M4 LINE L1 -1089 5057 4329 302 246 15 0 chr6 174430654 174430719 -14848835 + L2 LINE L2 3189 3254 -18 207 0 0 0 chr6 174430931 174430954 -14848600 + (A)n Simple_repeat Simple_repeat 1 23 0 2233 90 3 0 chr6 174430964 174431263 -14848291 + AluSx SINE Alu 1 300 -12 190 239 65 0 chr6 174432476 174432522 -14847032 + MIR SINE MIR 104 152 -56 1074 51 0 15 chr6 174432523 174432660 -14846894 + AluSx SINE Alu 1 135 -178 2121 102 0 0 chr6 174432660 174432945 -14846609 + AluSx SINE Alu 1 285 -27 560 61 117 5 chr6 174432948 174433548 -14846006 + (TA)n Simple_repeat Simple_repeat 1 667 0 1032 141 0 6 chr6 174433578 174433741 -14845813 + AluSx SINE Alu 133 294 -18 3850 29 0 0 chr6 174433964 174434382 -14845172 + SVA Other Other 969 1386 0 3361 176 68 34 chr6 174434393 174434637 -14844917 + Charlie1 DNA MER1_type 1925 2159 -602 1829 112 15 4 chr6 174434637 174434904 -14844650 + AluSx SINE Alu 36 305 -7 3361 176 68 34 chr6 174434904 174435345 -14844209 + Charlie1 DNA MER1_type 2159 2645 -116 1804 169 0 10 chr6 174435345 174435647 -14843907 - AluJo SINE Alu -13 299 1 3361 176 68 34 chr6 174435647 174435767 -14843787 + Charlie1 DNA MER1_type 2645 2759 -2 1705 164 13 20 chr6 174435806 174436110 -14843444 - AluJb SINE Alu -10 302 1 2777 139 22 72 chr6 174436570 174436662 -14842892 + L1MB3 LINE L1 5658 5753 -430 1919 152 3 20 chr6 174436662 174436964 -14842590 - AluJo SINE Alu -14 298 2 2777 139 22 72 chr6 174436964 174437018 -14842536 + L1MB3 LINE L1 5753 5808 -375 402 21 0 0 chr6 174437018 174437065 -14842489 + (CA)n Simple_repeat Simple_repeat 2 48 0 2777 139 22 72 chr6 174437065 174437416 -14842138 + L1MB3 LINE L1 5808 6128 -55 1862 178 0 0 chr6 174437416 174437709 -14841845 + AluJo SINE Alu 1 293 -19 2777 139 22 72 chr6 174437709 174437763 -14841791 + L1MB3 LINE L1 6128 6183 0 22 0 0 0 chr6 174438268 174438290 -14841264 + AT_rich Low_complexity Low_complexity 1 22 0 242 322 22 0 chr6 174438570 174438660 -14840894 + L1ME LINE L1 5558 5649 -513 269 93 278 0 chr6 174438764 174438818 -14840736 + MER11A LTR ERVK 933 1001 -265 2024 66 22 62 chr6 174438818 174439138 -14840416 + MER11A LTR ERVK 937 1243 -23 21611 77 22 13 chr6 174439138 174440176 -14839378 + HERVK11 LTR ERVK 2488 3515 -4438 186 323 62 0 chr6 174440176 174440241 -14839313 + MIR SINE MIR 64 132 -76 21611 77 22 13 chr6 174440241 174443819 -14835735 + HERVK11 LTR ERVK 3515 7206 -747 782 53 0 0 chr6 174443820 174443914 -14835640 + HERVK11 LTR ERVK 7860 7953 0 3954 76 61 30 chr6 174443914 174444656 -14834898 + MER11A LTR ERVK 1 798 -438 4674 165 43 68 chr6 174444671 174445770 -14833784 + MER11C LTR ERVK 1 1071 0 2288 56 18 59 chr6 174445770 174446108 -14833446 + MER11A LTR ERVK 943 1266 0 335 130 0 0 chr6 174446110 174446156 -14833398 + AluJb SINE Alu 190 235 -67 292 214 0 22 chr6 174446172 174446261 -14833293 + GA-rich Low_complexity Low_complexity 3 89 0 245 239 11 34 chr6 174446271 174446359 -14833195 + L1ME3A LINE L1 5895 5980 -182 312 245 69 90 chr6 174446390 174446476 -14833078 + L1ME3A LINE L1 5963 6049 -121 2164 120 0 7 chr6 174446476 174446775 -14832779 - AluY SINE Alu -14 297 1 312 245 69 90 chr6 174446775 174446876 -14832678 + L1ME3A LINE L1 6049 6146 -24 1624 160 72 7 chr6 174447372 174447665 -14831889 + AluJb SINE Alu 1 312 0 254 164 18 0 chr6 174447673 174447728 -14831826 + GA-rich Low_complexity Low_complexity 3 58 0 2304 107 3 0 chr6 174447993 174448301 -14831253 - AluSx SINE Alu -3 309 1 23 0 0 0 chr6 174448845 174448868 -14830686 + AT_rich Low_complexity Low_complexity 1 23 0 632 289 35 14 chr6 174449512 174449799 -14829755 + L1ME4a LINE L1 5568 5860 -261 659 188 18 0 chr6 174450031 174450143 -14829411 - MER81 DNA DNA 0 114 1 957 280 118 25 chr6 174450259 174451268 -14828286 + L1MEd LINE L1 605 1743 -4567 659 268 51 47 chr6 174451313 174451548 -14828006 - MIR SINE MIR -21 241 6 1322 142 84 5 chr6 174451846 174452204 -14827350 + L1M1 LINE L1 5119 5504 -743 1296 164 35 4 chr6 174452205 174452437 -14827117 + AluJo SINE Alu 58 296 -16 1738 188 0 0 chr6 174452504 174452814 -14826740 + AluJo SINE Alu 3 312 0 914 279 71 21 chr6 174452830 174453451 -14826103 + L1MEd LINE L1 2978 3629 -2500 320 263 77 83 chr6 174453495 174453583 -14825971 + L1MEd LINE L1 3834 3921 -2208 2560 44 0 0 chr6 174453583 174453876 -14825678 + AluY SINE Alu 1 293 -18 320 263 77 83 chr6 174453876 174454137 -14825417 + L1MEd LINE L1 3921 4181 -1948 398 240 78 65 chr6 174454189 174454343 -14825211 - MIR SINE MIR -56 206 51 268 352 96 8 chr6 174455285 174455410 -14824144 + L2 LINE L2 3136 3271 -1 189 0 0 0 chr6 174456643 174456664 -14822890 + (CAGGG)n Simple_repeat Simple_repeat 1 21 0 275 226 71 24 chr6 174457476 174457560 -14821994 - MIR SINE MIR -83 179 92 * 328 146 18 0 chr6 174457537 174457599 -14821955 + MIR SINE MIR 88 151 -57 205 388 0 0 chr6 174457743 174457823 -14821731 + L2 LINE L2 3193 3272 0 576 295 98 26 chr6 174457854 174458088 -14821466 - L1MEd LINE L1 -5371 748 498 322 263 58 22 chr6 174458251 174458388 -14821166 - L1MEd LINE L1 -5950 169 28 2203 99 20 10 chr6 174459221 174459523 -14820031 - AluSx SINE Alu -7 305 1 180 0 0 0 chr6 174460922 174460942 -14818612 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1788 55 5 5 chr6 174460951 174461168 -14818386 + AluSq SINE Alu 83 299 -14 30 0 0 0 chr6 174461432 174461462 -14818092 + AT_rich Low_complexity Low_complexity 1 30 0 226 169 85 68 chr6 174461496 174461555 -14817999 - L2 LINE L2 0 3272 3213 2517 48 7 16 chr6 174463141 174463451 -14816103 + AluY SINE Alu 1 307 -4 196 269 0 0 chr6 174463574 174463626 -14815928 + L2 LINE L2 3256 3307 -6 1998 153 0 6 chr6 174465142 174465456 -14814098 + AluJb SINE Alu 1 312 0 1318 143 61 17 chr6 174465860 174466090 -14813464 + AluJo SINE Alu 73 312 0 2161 120 0 3 chr6 174466113 174466413 -14813141 + AluSx SINE Alu 1 299 -13 220 309 0 0 chr6 174467366 174467421 -14812133 - L2 LINE L2 -84 3229 3175 479 293 96 42 chr6 174467517 174467587 -14811967 - L2 LINE L2 -510 2804 2739 2519 50 0 3 chr6 174467587 174467888 -14811666 - AluY SINE Alu -11 300 1 479 293 96 42 chr6 174467888 174468056 -14811498 - L2 LINE L2 -575 2739 2553 2143 113 0 0 chr6 174468095 174468405 -14811149 - AluSg SINE Alu 0 310 1 741 274 34 0 chr6 174468419 174468598 -14810956 + MIR SINE MIR 78 262 0 349 259 9 80 chr6 174468607 174468719 -14810835 + MIR SINE MIR 157 260 -2 588 327 76 17 chr6 174468740 174469150 -14810404 - L2 LINE L2 -890 2424 1991 569 292 26 10 chr6 174469626 174469821 -14809733 + MIR SINE MIR 8 205 -57 236 324 65 43 chr6 174470202 174470341 -14809213 + L2 LINE L2 3101 3242 -30 1957 139 14 0 chr6 174470653 174470947 -14808607 + AluJo SINE Alu 1 298 -14 2333 103 0 0 chr6 174471213 174471515 -14808039 - AluSx SINE Alu -10 302 1 291 207 92 23 chr6 174472580 174472667 -14806887 + MIR SINE MIR 167 259 -3 318 315 71 8 chr6 174472998 174473125 -14806429 - MIR SINE MIR -122 140 6 696 139 0 0 chr6 174473709 174473810 -14805744 + MLT1A1 LTR MaLR 1 101 -264 866 167 7 0 chr6 174473813 174473951 -14805603 + MLT1A1 LTR MaLR 227 365 0 2293 111 0 9 chr6 174474044 174474382 -14805172 + AluSp SINE Alu 1 335 0 240 324 94 20 chr6 174475136 174475380 -14804174 + L1PA7 LINE L1 5702 5963 -191 * 2323 124 19 6 chr6 174475173 174475535 -14804019 + L1MB3 LINE L1 5756 6122 -61 934 184 89 0 chr6 174475536 174475726 -14803828 + MER2 DNA MER2_type 3 209 -136 261 131 98 0 chr6 174475790 174475827 -14803727 + L1MB4 LINE L1 6114 6146 -34 1851 152 10 0 chr6 174475827 174476116 -14803438 + AluJb SINE Alu 1 292 -20 261 131 98 0 chr6 174476116 174476139 -14803415 + L1MB4 LINE L1 6146 6180 0 2158 93 7 13 chr6 174476683 174476983 -14802571 - AluSc SINE Alu -11 298 1 24 0 0 0 chr6 174477072 174477096 -14802458 + AT_rich Low_complexity Low_complexity 1 24 0 274 315 87 8 chr6 174477105 174477232 -14802322 + MIR3 SINE MIR 3 139 -69 1009 169 0 37 chr6 174478278 174478296 -14801258 - AluJb SINE Alu -15 297 280 2337 101 0 0 chr6 174478296 174478602 -14800952 - AluSx SINE Alu -6 306 1 213 39 0 0 chr6 174478602 174478628 -14800926 + (TTG)n Simple_repeat Simple_repeat 1 26 0 1009 169 0 37 chr6 174478628 174478797 -14800757 - AluJb SINE Alu -30 282 116 191 280 147 0 chr6 174479421 174479496 -14800058 - MIR SINE MIR -74 134 49 713 281 88 57 chr6 174480261 174480737 -14798817 + MLT1J LTR MaLR 4 494 -17 854 223 66 5 chr6 174481048 174481245 -14798309 - MER3 DNA MER1_type 0 209 1 2294 93 10 6 chr6 174481264 174481576 -14797978 + AluSq SINE Alu 1 313 0 1839 55 0 0 chr6 174481791 174482008 -14797546 - AluY SINE Alu -14 297 81 1620 220 125 81 chr6 174482054 174482772 -14796782 + MER21B LTR ERV1 17 738 -125 1998 112 0 0 chr6 174483174 174483434 -14796120 - AluSx SINE Alu -51 261 2 297 230 54 0 chr6 174484210 174484284 -14795270 + MLT1K LTR MaLR 509 586 -2 534 168 20 10 chr6 174484877 174484978 -14794576 + L1MB3 LINE L1 6075 6176 -7 189 175 0 0 chr6 174486061 174486101 -14793453 + (CATA)n Simple_repeat Simple_repeat 3 42 0 873 266 139 45 chr6 174486557 174487116 -14792438 - MLT1L LTR MaLR 0 615 4 2191 127 0 6 chr6 174487279 174487593 -14791961 - AluSx SINE Alu 0 312 1 182 336 106 62 chr6 174487594 174487802 -14791752 + MIR SINE MIR 22 238 -24 2153 121 0 0 chr6 174487940 174488222 -14791332 + AluSx SINE Alu 1 282 -30 2186 106 0 13 chr6 174488328 174488629 -14790925 - AluSx SINE Alu -14 298 2 565 175 19 0 chr6 174489606 174489709 -14789845 + L1MD3 LINE L1 7785 7889 -106 2184 110 0 3 chr6 174489709 174490008 -14789546 + AluSc SINE Alu 1 298 -11 2423 101 0 0 chr6 174491928 174492235 -14787319 + AluSc SINE Alu 2 308 -1 830 206 7 0 chr6 174492257 174492403 -14787151 + FRAM SINE Alu 10 156 -20 1420 149 130 19 chr6 174493273 174493542 -14786012 - AluJo SINE Alu 0 302 4 306 73 0 0 chr6 174493598 174493639 -14785915 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1597 166 10 35 chr6 174493641 174493815 -14785739 - AluJb SINE Alu -30 282 116 2456 65 3 3 chr6 174493815 174494109 -14785445 + AluY SINE Alu 2 295 -16 1597 166 10 35 chr6 174494109 174494223 -14785331 - AluJb SINE Alu -196 116 1 2365 56 42 10 chr6 174495875 174496163 -14783391 - AluY SINE Alu -14 297 1 360 0 0 0 chr6 174496319 174496359 -14783195 + (CA)n Simple_repeat Simple_repeat 2 41 0 309 359 106 0 chr6 174496572 174496714 -14782840 - L1ME4a LINE L1 -210 5911 5755 303 240 0 31 chr6 174496737 174496833 -14782721 - L1ME4a LINE L1 -427 5694 5602 1874 155 7 23 chr6 174497088 174497391 -14782163 + AluJb SINE Alu 1 298 -14 384 104 75 15 chr6 174497433 174497500 -14782054 - MLT1A2 LTR MaLR 0 374 304 35 0 0 0 chr6 174497520 174497555 -14781999 + AT_rich Low_complexity Low_complexity 1 35 0 879 127 0 0 chr6 174497555 174497673 -14781881 - FLAM_C SINE Alu -15 118 1 1403 217 9 19 chr6 174497673 174497996 -14781558 - MLT1A2 LTR MaLR -54 320 1 2397 215 98 96 chr6 174498081 174498495 -14781059 + L1MC5 LINE L1 6742 7154 -807 360 0 0 0 chr6 174498495 174498535 -14781019 + (CA)n Simple_repeat Simple_repeat 2 41 0 2397 215 98 96 chr6 174498535 174499263 -14780291 + L1MC5 LINE L1 7154 7886 -75 2101 78 0 15 chr6 174499296 174499564 -14779990 + AluSg SINE Alu 1 264 -46 2313 96 0 0 chr6 174500490 174500783 -14778771 + AluSg SINE Alu 1 293 -17 4345 86 34 78 chr6 174500786 174501846 -14777708 + SVA Other Other 183 868 -520 1729 100 13 74 chr6 174501863 174502325 -14777229 + SVA Other Other 433 866 -520 624 32 7 162 chr6 174502342 174502959 -14776595 + SVA Other Other 665 794 -592 6788 66 12 49 chr6 174502972 174503963 -14775591 + SVA Other Other 433 1386 0 2436 88 10 0 chr6 174505274 174505581 -14773973 + AluSg SINE Alu 1 310 0 302 230 126 0 chr6 174505946 174506081 -14773473 - L1ME4a LINE L1 -798 5348 5197 201 122 49 0 chr6 174506490 174506531 -14773023 + (TTTAA)n Simple_repeat Simple_repeat 5 47 0 391 125 0 0 chr6 174506671 174506735 -14772819 + L1MB3 LINE L1 5767 5830 -353 879 136 0 0 chr6 174506735 174506860 -14772694 + AluJo SINE Alu 1 125 -187 2049 139 31 14 chr6 174506870 174507187 -14772367 + L1MB3 LINE L1 5815 6140 -43 2066 135 0 35 chr6 174507187 174507498 -14772056 - AluSx SINE Alu -12 300 1 2049 139 31 14 chr6 174507498 174507540 -14772014 + L1MB3 LINE L1 6140 6180 -3 321 291 134 48 chr6 174509911 174510447 -14769107 + L1M2 LINE L1 531 1112 -5737 1045 171 0 26 chr6 174511145 174511338 -14768216 - AluJo SINE Alu -124 188 1 640 196 82 6 chr6 174511384 174511542 -14768012 + AluJo SINE Alu 126 295 -17 336 100 0 0 chr6 174511619 174511669 -14767885 + AluSc SINE Alu 156 205 -94 907 84 16 76 chr6 174511686 174512474 -14767080 - SVA Other Other -520 866 665 23 33 0 0 chr6 174512555 174512585 -14766969 + GC_rich Low_complexity Low_complexity 1 30 0 1045 171 0 26 chr6 174513483 174513676 -14765878 - AluJo SINE Alu -124 188 1 640 196 82 6 chr6 174513722 174513880 -14765674 + AluJo SINE Alu 126 295 -17 943 107 0 8 chr6 174513957 174514088 -14765466 + AluSg/x SINE Alu 156 285 -25 2214 94 7 29 chr6 174514389 174514696 -14764858 - AluSx SINE Alu -12 300 1 297 329 145 5 chr6 174515136 174515343 -14764211 + MIR SINE MIR 13 248 -14 2108 131 0 0 chr6 174515356 174515647 -14763907 + AluSx SINE Alu 1 291 -21 2483 68 0 3 chr6 174515655 174515950 -14763604 + AluSp SINE Alu 1 294 -19 1412 137 14 0 chr6 174515976 174516188 -14763366 + AluSg/x SINE Alu 85 299 -13 889 164 7 7 chr6 174516207 174516359 -14763195 + FRAM SINE Alu 8 159 -17 210 277 0 0 chr6 174516363 174516410 -14763144 - MIR SINE MIR 0 262 216 1568 173 62 7 chr6 174516588 174516860 -14762694 - AluJo SINE Alu -21 291 5 516 276 20 95 chr6 174517816 174518110 -14761444 + L3 LINE CR1 963 1234 -343 2476 81 3 0 chr6 174518164 174518472 -14761082 - AluSc SINE Alu 0 309 1 1901 154 3 47 chr6 174519048 174519251 -14760303 - AluJb SINE Alu -7 305 120 1806 64 0 9 chr6 174519251 174519470 -14760084 + AluY SINE Alu 82 298 -13 1901 154 3 47 chr6 174519470 174519585 -14759969 - AluJb SINE Alu -192 120 1 2262 125 3 0 chr6 174519635 174519946 -14759608 + AluSx SINE Alu 1 312 0 2327 104 0 13 chr6 174520068 174520375 -14759179 + AluSx SINE Alu 1 303 -9 2053 109 22 45 chr6 174521168 174521481 -14758073 + AluSq SINE Alu 1 306 -7 1634 210 0 0 chr6 174521482 174521773 -14757781 - AluJo SINE Alu -21 291 1 740 179 8 15 chr6 174521910 174522044 -14757510 - FLAM_C SINE Alu 0 133 1 392 252 113 83 chr6 174522230 174522375 -14757179 + MLT1L LTR MaLR 3 161 -454 786 214 27 16 chr6 174522375 174522562 -14756992 + MER5A DNA MER1_type 1 189 0 392 252 113 83 chr6 174522562 174522682 -14756872 + MLT1L LTR MaLR 161 276 -339 2303 97 3 28 chr6 174522686 174523006 -14756548 - AluSx SINE Alu 0 312 1 1005 165 109 25 chr6 174523041 174523326 -14756228 + Charlie1b DNA MER1_type 48 356 -167 25 65 0 0 chr6 174523330 174523376 -14756178 + AT_rich Low_complexity Low_complexity 1 46 0 326 159 51 22 chr6 174523376 174523514 -14756040 + Charlie1b DNA MER1_type 303 444 -79 223 170 0 0 chr6 174523518 174523565 -14755989 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 262 319 112 12 chr6 174523642 174523883 -14755671 + MLT1L LTR MaLR 346 610 -5 2300 102 7 0 chr6 174523912 174524207 -14755347 - AluSx SINE Alu -15 297 1 22 35 0 0 chr6 174524679 174524708 -14754846 + AT_rich Low_complexity Low_complexity 1 29 0 425 203 0 0 chr6 174524708 174524787 -14754767 + AluJ/FLAM SINE Alu 1 79 -233 222 94 94 0 chr6 174524787 174524840 -14754714 + (TA)n Simple_repeat Simple_repeat 1 58 0 1270 154 4 47 chr6 174524841 174525074 -14754480 + AluJb SINE Alu 90 312 0 229 277 117 36 chr6 174525305 174525442 -14754112 + MLT1I LTR MaLR 65 212 -197 204 235 0 0 chr6 174525599 174525650 -14753904 + A-rich Low_complexity Low_complexity 1 51 0 200 246 14 0 chr6 174525844 174525913 -14753641 + (TGAA)n Simple_repeat Simple_repeat 4 73 0 1221 190 47 109 chr6 174525932 174526266 -14753288 - MSTD LTR MaLR 0 396 43 2443 86 0 3 chr6 174526266 174526569 -14752985 + AluY SINE Alu 1 302 -9 1221 190 47 109 chr6 174526569 174526605 -14752949 - MSTD LTR MaLR -353 43 52 2265 108 3 3 chr6 174526605 174526900 -14752654 - AluSg SINE Alu -15 295 1 1221 190 47 109 chr6 174526900 174526950 -14752604 - MSTD LTR MaLR -343 53 1 212 351 46 53 chr6 174527047 174527178 -14752376 + L3 LINE CR1 1402 1531 -46 2548 62 0 10 chr6 174527518 174527826 -14751728 + AluY SINE Alu 1 305 -6 1147 80 7 13 chr6 174527826 174528019 -14751535 + AluSp SINE Alu 135 326 0 983 111 35 0 chr6 174528019 174528199 -14751355 + AluSg/x SINE Alu 131 315 0 450 0 0 0 chr6 174528233 174528283 -14751271 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2670 55 0 0 chr6 174528433 174528740 -14750814 - AluY SINE Alu -4 307 1 25 0 0 0 chr6 174528914 174528939 -14750615 + AT_rich Low_complexity Low_complexity 1 25 0 2282 87 0 78 chr6 174529163 174529498 -14750056 + AluSc SINE Alu 1 309 0 2289 76 10 17 chr6 174529565 174529867 -14749687 - AluSp SINE Alu -13 300 1 581 0 14 0 chr6 174529992 174530061 -14749493 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 306 0 0 0 chr6 174530171 174530205 -14749349 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 719 156 109 0 chr6 174530208 174530336 -14749218 - FAM SINE Alu -28 157 16 1065 224 24 31 chr6 174530591 174530845 -14748709 - MIR SINE MIR -10 252 1 917 191 37 80 chr6 174530953 174531246 -14748308 - L1ME2 LINE L1 -9 6155 5876 2534 64 7 0 chr6 174531246 174531542 -14748012 - AluY SINE Alu -13 298 1 917 191 37 80 chr6 174531542 174531573 -14747981 - L1ME2 LINE L1 -288 5876 5845 1193 109 0 0 chr6 174531643 174531799 -14747755 - AluSx SINE Alu -14 298 143 677 93 0 0 chr6 174531799 174531885 -14747669 - AluSx SINE Alu -226 87 2 1677 211 52 80 chr6 174531886 174531968 -14747586 - L1ME2 LINE L1 -411 5753 5670 1859 173 13 3 chr6 174531968 174532274 -14747280 - AluJb SINE Alu -3 309 1 1677 211 52 80 chr6 174532274 174532366 -14747188 - L1ME2 LINE L1 -494 5670 5577 2442 94 0 0 chr6 174532366 174532673 -14746881 + AluSg SINE Alu 1 307 -3 1677 211 52 80 chr6 174532673 174533166 -14746388 - L1ME2 LINE L1 -587 5577 5108 324 226 21 11 chr6 174533251 174533344 -14746210 - L1ME2 LINE L1 -1233 4913 4820 2061 130 14 0 chr6 174533397 174533689 -14745865 + AluSx SINE Alu 1 296 -16 2485 76 0 10 chr6 174533694 174534008 -14745546 + AluY SINE Alu 1 311 0 2014 104 42 14 chr6 174534017 174534306 -14745248 + AluSp SINE Alu 1 297 -16 5376 108 234 113 chr6 174534368 174535884 -14743670 + pTR5 LTR ERV1 741 2438 0 1849 131 19 0 chr6 174535919 174536187 -14743367 - AluSx SINE Alu -13 299 27 308 188 0 14 chr6 174536187 174536256 -14743298 - L1M LINE L1 -761 5417 5350 573 212 51 8 chr6 174536299 174536417 -14743137 + MLT1A2 LTR MaLR 189 311 -63 2042 115 11 17 chr6 174536418 174536705 -14742849 - AluSg SINE Alu -24 286 2 548 306 105 61 chr6 174536844 174537324 -14742230 + L2 LINE L2 2709 3229 -43 704 284 71 21 chr6 174537351 174537689 -14741865 + L1ME4a LINE L1 5500 5854 -267 2147 106 0 3 chr6 174537855 174538139 -14741415 + AluSx SINE Alu 1 283 -29 474 18 0 0 chr6 174538146 174538201 -14741353 + (GAAAA)n Simple_repeat Simple_repeat 4 58 0 234 244 47 12 chr6 174539055 174539141 -14740413 + L1ME4a LINE L1 5971 6059 -62 253 271 97 103 chr6 174539377 174539532 -14740022 + MER91A DNA MER1_type 35 188 -8 289 0 0 0 chr6 174541071 174541103 -14738451 + (TTTA)n Simple_repeat Simple_repeat 1 148 0 2193 109 0 0 chr6 174541103 174541387 -14738167 - AluSx SINE Alu -29 283 1 2222 119 3 3 chr6 174541901 174542212 -14737342 - AluSx SINE Alu -1 311 1 482 252 174 7 chr6 174542277 174542432 -14737122 + MER5A DNA MER1_type 9 189 0 2254 62 49 7 chr6 174542658 174542946 -14736608 - AluSg SINE Alu -9 301 2 414 0 0 0 chr6 174543311 174543357 -14736197 + (CA)n Simple_repeat Simple_repeat 1 46 0 561 273 0 14 chr6 174543703 174543846 -14735708 + MER5B DNA MER1_type 1 141 -37 1840 129 19 42 chr6 174543980 174544154 -14735400 - AluJb SINE Alu -9 303 138 1818 153 30 0 chr6 174544154 174544449 -14735105 - AluSx SINE Alu -8 304 1 1840 129 19 42 chr6 174544449 174544584 -14734970 - AluJb SINE Alu -174 138 1 305 260 106 0 chr6 174544588 174544692 -14734862 + L1ME4a LINE L1 5988 6102 -19 473 264 0 14 chr6 174544743 174544883 -14734671 - L1PA16 LINE L1 -4 6162 6025 1662 126 105 7 chr6 174545379 174545656 -14733898 + AluSx SINE Alu 1 304 -8 4052 104 75 7 chr6 174546043 174546659 -14732895 - HSMAR2 DNA Mariner -1 1301 644 4324 114 34 3 chr6 174546981 174547620 -14731934 - HSMAR2 DNA Mariner -643 659 1 270 275 81 101 chr6 174547662 174547778 -14731776 - MIR SINE MIR -115 147 33 2301 85 0 19 chr6 174547778 174548085 -14731469 - AluY SINE Alu -10 301 1 270 275 81 101 chr6 174548085 174548117 -14731437 - MIR SINE MIR -229 33 2 657 172 0 0 chr6 174548790 174548889 -14730665 - FRAM SINE Alu -30 146 48 22 0 0 0 chr6 174548921 174548943 -14730611 + AT_rich Low_complexity Low_complexity 1 22 0 3423 140 31 7 chr6 174549307 174549850 -14729704 + LTR6A LTR ERV1 9 564 0 2446 64 17 0 chr6 174550075 174550372 -14729182 - AluY SINE Alu -9 302 1 227 269 0 0 chr6 174552519 174552571 -14726983 - L2 LINE L2 -4 3268 3217 1518 159 168 13 chr6 174552770 174553085 -14726469 - MLT1A1 LTR MaLR -1 364 1 1809 202 156 23 chr6 174553086 174553231 -14726323 - L1ME3 LINE L1 -14 6148 6024 2218 169 17 3 chr6 174553231 174553591 -14725963 - MLT1A1 LTR MaLR 0 365 1 1809 202 156 23 chr6 174553591 174554004 -14725550 - L1ME3 LINE L1 -138 6024 5516 1791 194 19 6 chr6 174554224 174554589 -14724965 - MLT1E1 LTR MaLR -8 646 277 367 167 167 0 chr6 174554622 174554700 -14724854 - MLT1E1 LTR MaLR -563 91 1 7364 38 10 0 chr6 174554806 174555735 -14723819 - L1PA6 LINE L1 -30 6124 5187 866 143 0 0 chr6 174555787 174555906 -14723648 + FLAM_C SINE Alu 1 119 -24 231 156 333 67 chr6 174555963 174556053 -14723501 - MER81 DNA DNA 0 114 1 421 315 41 7 chr6 174556072 174556218 -14723336 - MIR SINE MIR -54 208 58 685 218 151 67 chr6 174556296 174556331 -14723223 + MER46C DNA MER2_type 1 32 -306 1553 188 0 68 chr6 174556331 174556655 -14722899 - AluJb SINE Alu -10 302 1 685 218 151 67 chr6 174556655 174556931 -14722623 + MER46C DNA MER2_type 32 338 0 2216 114 3 0 chr6 174558042 174558341 -14721213 - AluSq SINE Alu -13 300 1 30 0 0 0 chr6 174558643 174558673 -14720881 + AT_rich Low_complexity Low_complexity 1 30 0 476 303 168 55 chr6 174558679 174559339 -14720215 + L2 LINE L2 1830 2564 -750 24 0 0 0 chr6 174559435 174559459 -14720095 + AT_rich Low_complexity Low_complexity 1 24 0 228 276 112 67 chr6 174560299 174560433 -14719121 - L2 LINE L2 0 3272 3133 584 181 47 27 chr6 174561422 174561618 -14717936 + MER6 DNA MER2_type -65 862 -3 265 253 95 21 chr6 174562082 174562177 -14717377 - L2 LINE L2 -1 3271 3170 381 311 23 8 chr6 174562305 174562437 -14717117 - MIR SINE MIR -76 186 53 2393 83 3 0 chr6 174562960 174563260 -14716294 - AluY SINE Alu -10 301 1 1264 238 107 72 chr6 174563542 174564289 -14715265 - HAL1 LINE L1 -183 2324 1552 332 359 39 0 chr6 174564314 174564417 -14715137 + MIR SINE MIR 8 114 -148 956 213 12 71 chr6 174564421 174564661 -14714893 - MER8 DNA MER2_type -1 238 13 406 246 48 24 chr6 174564664 174564790 -14714764 + MIR SINE MIR 113 241 -21 839 279 100 88 chr6 174564802 174565689 -14713865 - HAL1 LINE L1 -1011 1496 596 471 35 0 0 chr6 174565689 174565746 -14713808 + (TG)n Simple_repeat Simple_repeat 1 57 0 839 279 100 88 chr6 174565746 174565758 -14713796 - HAL1 LINE L1 -1911 596 586 689 263 70 28 chr6 174565813 174566026 -14713528 - MIR SINE MIR -16 246 25 1427 145 128 3 chr6 174567570 174567852 -14711702 - MER33 DNA MER1_type 0 324 8 3429 233 78 69 chr6 174567968 174569411 -14710143 - L1MC4 LINE L1 -1 8321 1996 371 169 25 93 chr6 174569425 174569500 -14710054 - LTR41 LTR ERVL -6 767 688 2449 88 7 0 chr6 174569500 174569808 -14709746 + AluSx SINE Alu 2 311 -1 261 0 0 0 chr6 174569810 174569839 -14709715 + (TA)n Simple_repeat Simple_repeat 2 30 0 371 169 25 93 chr6 174569839 174569878 -14709676 - LTR41 LTR ERVL -86 687 658 364 245 70 49 chr6 174570392 174570535 -14709019 - LTR41 LTR ERVL -615 158 13 2400 211 40 20 chr6 174570677 174570825 -14708729 - Charlie1a DNA MER1_type -2131 630 486 2487 140 66 25 chr6 174570825 174571050 -14708504 - MSTB LTR MaLR -1 425 174 1796 91 4 0 chr6 174571050 174571282 -14708272 - AluSq SINE Alu -9 304 72 2487 140 66 25 chr6 174571282 174571464 -14708090 - MSTB LTR MaLR -252 174 1 2400 211 40 20 chr6 174571464 174571859 -14707695 - Charlie1a DNA MER1_type -2275 486 76 183 221 49 139 chr6 174571889 174572011 -14707543 - MER5A DNA MER1_type 0 189 79 27 49 0 0 chr6 174572739 174572780 -14706774 + AT_rich Low_complexity Low_complexity 1 41 0 272 295 133 0 chr6 174573791 174573896 -14705658 - L1MC4 LINE L1 -1414 6628 6510 * 288 248 8 68 chr6 174573895 174573979 -14705575 - L1MC4a LINE L1 -1355 6453 6376 1948 194 21 16 chr6 174573979 174574351 -14705203 + MLT1A2 LTR MaLR 1 374 0 288 248 8 68 chr6 174574351 174574383 -14705171 - L1MC4a LINE L1 -1432 6376 6344 4345 142 25 15 chr6 174574431 174575143 -14704411 + Tigger2 DNA MER2_type 31 749 -1969 1469 146 45 0 chr6 174575201 174575448 -14704106 + Tigger2 DNA MER2_type 2461 2718 0 1463 180 37 59 chr6 174575511 174575820 -14703734 + MLT1A1 LTR MaLR 1 359 -67 2207 101 7 3 chr6 174575820 174576118 -14703436 + AluSg SINE Alu 1 299 -11 1463 180 37 59 chr6 174576118 174576169 -14703385 + MLT1A1 LTR MaLR 359 410 -16 2934 227 105 48 chr6 174576196 174577364 -14702190 - L1MC4a LINE L1 -747 5399 5039 601 73 21 10 chr6 174577846 174577942 -14701612 + (TTTC)n Simple_repeat Simple_repeat 4 100 0 1945 144 16 10 chr6 174577947 174578252 -14701302 - AluJb SINE Alu -2 310 4 765 156 86 8 chr6 174578967 174579095 -14700459 - AluJo/FRAM SINE Alu -17 295 158 319 200 0 0 chr6 174579095 174579145 -14700409 - Alu SINE Alu -253 50 1 3249 198 56 40 chr6 174579879 174580684 -14698870 - MER11C LTR ERVK 0 1071 254 4636 151 31 26 chr6 174581178 174582116 -14697438 - L1MA4 LINE L1 -210 6090 5156 2116 118 4 0 chr6 174582116 174582396 -14697158 - AluSg SINE Alu -29 281 1 4636 151 31 26 chr6 174582396 174582472 -14697082 - L1MA4 LINE L1 -1144 5156 5082 343 304 189 60 chr6 174582866 174583083 -14696471 + MIR SINE MIR 6 250 -12 225 0 0 0 chr6 174583128 174583153 -14696401 + (TG)n Simple_repeat Simple_repeat 2 26 0 1389 229 70 12 chr6 174583566 174583911 -14695643 + MLT1A1 LTR MaLR 1 365 0 1402 184 64 99 chr6 174584051 174584517 -14695037 + LTR7 LTR ERV1 1 450 0 5464 138 37 0 chr6 174584521 174585363 -14694191 + Tigger1 DNA MER2_type 8 880 -1538 976 203 88 5 chr6 174585363 174585555 -14693999 - AluJo SINE Alu -61 251 44 4292 76 25 7 chr6 174585557 174586569 -14692985 - MER11A LTR ERVK 0 1266 1 288 241 0 0 chr6 174586569 174586611 -14692943 - AluJo SINE Alu -255 47 6 659 191 9 0 chr6 174586616 174586731 -14692823 + Tigger1 DNA MER2_type 2300 2415 -3 391 282 196 31 chr6 174587533 174587891 -14691663 + L2 LINE L2 2547 2963 -351 6420 101 46 27 chr6 174588341 174590354 -14689200 - SVA Other Other -518 1386 13 1966 135 24 0 chr6 174590355 174590644 -14688910 - AluSx SINE Alu -16 296 1 2446 92 0 9 chr6 174591298 174591613 -14687941 - AluSx SINE Alu 0 312 1 23 0 0 0 chr6 174591646 174591669 -14687885 + AT_rich Low_complexity Low_complexity 1 23 0 2321 87 0 0 chr6 174591997 174592286 -14687268 - AluSc SINE Alu -20 289 1 28 0 0 0 chr6 174593078 174593106 -14686448 + AT_rich Low_complexity Low_complexity 1 28 0 1810 186 17 0 chr6 174594203 174594504 -14685050 + AluJo SINE Alu 1 306 -6 1632 177 0 49 chr6 174594885 174595212 -14684342 - AluJo SINE Alu -1 311 1 712 255 159 20 chr6 174595658 174595960 -14683594 + L1MB8 LINE L1 5833 6176 -2 326 313 179 32 chr6 174595968 174596437 -14683117 - L2 LINE L2 -1054 2260 1723 3627 87 11 0 chr6 174599149 174599597 -14679957 - MLT2A2 LTR ERVL 0 453 1 203 175 0 0 chr6 174599924 174599964 -14679590 + A-rich Low_complexity Low_complexity 1 40 0 573 267 104 16 chr6 174600730 174601037 -14678517 - L1MEd LINE L1 -4137 2259 1926 1780 184 0 7 chr6 174602177 174602476 -14677078 - AluJo SINE Alu -15 297 1 2077 86 48 10 chr6 174602620 174602911 -14676643 + AluSg SINE Alu 1 302 -8 2209 106 3 6 chr6 174603300 174603611 -14675943 - AluSx SINE Alu -2 310 1 24 0 0 0 chr6 174603964 174603988 -14675566 + AT_rich Low_complexity Low_complexity 1 24 0 212 328 60 43 chr6 174604090 174604206 -14675348 + MIR3 SINE MIR 4 121 -87 703 289 97 38 chr6 174604303 174604552 -14675002 - L1MEd LINE L1 -851 1725 1492 2355 67 3 0 chr6 174604552 174604861 -14674693 - AluY SINE Alu 0 310 1 703 289 97 38 chr6 174604861 174605265 -14674289 - L1MEd LINE L1 -1084 1492 938 2447 75 16 0 chr6 174605291 174605597 -14673957 - AluY SINE Alu 0 311 1 2491 74 0 3 chr6 174605716 174606027 -14673527 - AluY SINE Alu -1 310 1 189 146 24 24 chr6 174606647 174606688 -14672866 + MIR3 SINE MIR 154 194 -14 1355 96 87 157 chr6 174607583 174607915 -14671639 + AluJb SINE Alu 1 309 -3 931 114 15 0 chr6 174608134 174608265 -14671289 - AluSg/x SINE Alu -15 297 165 1476 185 10 34 chr6 174609037 174609335 -14670219 + AluJb SINE Alu 1 291 -21 309 255 235 25 chr6 174609487 174609730 -14669824 + L1MC4a LINE L1 5879 6172 -1636 1561 148 0 107 chr6 174609734 174610001 -14669553 + AluJb SINE Alu 3 226 -86 2518 81 0 0 chr6 174610001 174610311 -14669243 + AluSq SINE Alu 1 310 -3 1561 148 0 107 chr6 174610311 174610388 -14669166 + AluJb SINE Alu 226 310 -2 218 300 0 0 chr6 174610665 174610725 -14668829 + MIR SINE MIR 86 145 -117 1950 151 0 0 chr6 174611657 174611942 -14667612 - AluJb SINE Alu -27 285 1 189 0 10 0 chr6 174611951 174612015 -14667539 + (T)n Simple_repeat Simple_repeat 1 21 0 317 261 261 6 chr6 174613024 174613185 -14666369 - MIR SINE MIR 0 262 61 988 170 0 0 chr6 174613990 174614149 -14665405 + FRAM SINE Alu 16 174 -2 2245 107 0 3 chr6 174614795 174615093 -14664461 + AluSx SINE Alu 1 297 -15 593 256 137 26 chr6 174615980 174616504 -14663050 - MLT1G1 LTR MaLR 0 555 1 268 282 160 0 chr6 174616560 174616716 -14662838 + MLT1L LTR MaLR 224 404 -211 252 284 78 0 chr6 174616770 174616872 -14662682 + MLT1J LTR MaLR 399 508 -3 388 306 27 27 chr6 174617149 174617296 -14662258 - MIR SINE MIR -30 232 86 366 319 69 0 chr6 174617386 174617502 -14662052 - L2 LINE L2 -3 3269 3146 1722 219 101 26 chr6 174617660 174618154 -14661400 - MLT1H LTR MaLR -7 542 12 325 311 81 48 chr6 174618212 174618299 -14661255 - L2 LINE L2 -840 2474 2391 2141 89 18 61 chr6 174618299 174618625 -14660929 - AluSx SINE Alu 0 312 1 325 311 81 48 chr6 174618625 174618810 -14660744 - L2 LINE L2 -923 2391 2193 641 269 152 19 chr6 174618839 174619095 -14660459 - L2 LINE L2 -624 2690 2401 2203 186 22 68 chr6 174619107 174619611 -14659943 - LTR42 LTR ERVL -14 481 1 518 281 20 0 chr6 174619613 174619766 -14659788 - L2 LINE L2 -935 2379 2224 223 377 41 0 chr6 174619799 174619945 -14659609 - L2 LINE L2 -714 2600 2449 22 35 0 0 chr6 174620015 174620044 -14659510 + AT_rich Low_complexity Low_complexity 1 29 0 2351 103 3 0 chr6 174620453 174620764 -14658790 + AluSx SINE Alu 1 312 0 847 218 76 55 chr6 174621124 174621413 -14658141 - MER46C DNA MER2_type -41 297 3 200 86 29 0 chr6 174621752 174621787 -14657767 + (TTG)n Simple_repeat Simple_repeat 2 37 0 237 317 122 0 chr6 174621792 174621874 -14657680 + L2 LINE L2 3133 3224 -48 321 211 78 78 chr6 174622369 174622535 -14657019 + MIR SINE MIR 30 195 -67 203 344 0 33 chr6 174622989 174623079 -14656475 - MIR SINE MIR -167 95 9 240 226 60 24 chr6 174623178 174623262 -14656292 + MIR SINE MIR 120 206 -56 2405 83 0 3 chr6 174624139 174624439 -14655115 - AluY SINE Alu -12 299 1 310 272 139 19 chr6 174625283 174625441 -14654113 + MIR SINE MIR 28 204 -58 218 204 41 0 chr6 174625442 174625540 -14654014 + (TA)n Simple_repeat Simple_repeat 1 102 0 1987 177 3 0 chr6 174625705 174626016 -14653538 - AluJo SINE Alu 0 312 1 860 290 13 4 chr6 174626537 174626768 -14652786 + MIR SINE MIR 2 234 -28 2563 74 0 0 chr6 174628197 174628508 -14651046 - AluY SINE Alu 0 311 1 1750 162 0 38 chr6 174629050 174629364 -14650190 + AluJb SINE Alu 3 304 -8 794 74 0 2 chr6 174629759 174629967 -14649587 + AluSx SINE Alu 51 295 -14 1372 177 112 0 chr6 174630702 174630962 -14648592 + AluJo SINE Alu 1 289 -23 221 274 32 42 chr6 174631733 174631828 -14647726 + L2 LINE L2 3187 3280 -33 2261 97 51 73 chr6 174631887 174632259 -14647295 - THE1B LTR MaLR 0 364 1 1235 95 0 0 chr6 174632677 174632835 -14646719 - AluSc SINE Alu 0 309 152 304 77 0 115 chr6 174632835 174632887 -14646667 + Alu SINE Alu 250 295 -7 9091 127 8 39 chr6 174632887 174634341 -14645213 - THE1B-int LTR MaLR -168 1412 3 2558 70 0 13 chr6 174634387 174634702 -14644852 + AluY SINE Alu 1 311 0 1492 163 208 27 chr6 174634708 174635098 -14644456 - THE1B LTR MaLR -27 424 1 2463 81 0 0 chr6 174635194 174635492 -14644062 + AluSp SINE Alu 1 298 -15 22 0 0 0 chr6 174635560 174635582 -14643972 + GC_rich Low_complexity Low_complexity 1 22 0 356 320 134 26 chr6 174635872 174636103 -14643451 + MIR SINE MIR 7 262 0 24 0 0 0 chr6 174636522 174636546 -14643008 + AT_rich Low_complexity Low_complexity 1 24 0 229 244 59 42 chr6 174636550 174636669 -14642885 - HAL1b LINE L1 -49 1299 1179 1130 57 51 51 chr6 174637370 174637461 -14642093 - MER30 DNA MER1_type -54 176 83 212 0 36 0 chr6 174637461 174637489 -14642065 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1130 57 51 51 chr6 174637489 174637573 -14641981 - MER30 DNA MER1_type -146 84 1 735 212 7 13 chr6 174637595 174637746 -14641808 + MLT1I LTR MaLR 258 407 -2 442 243 92 27 chr6 174639277 174639446 -14640108 - MER5A DNA MER1_type -3 175 1 224 337 32 0 chr6 174639645 174639740 -14639814 - MIR SINE MIR -162 100 3 913 220 123 56 chr6 174640299 174640640 -14638914 - Charlie7 DNA MER1_type -1889 723 360 335 0 43 0 chr6 174640945 174640991 -14638563 + (TTG)n Simple_repeat Simple_repeat 2 180 0 1887 139 14 0 chr6 174640991 174641271 -14638283 - AluJb SINE Alu -28 284 1 22 35 0 0 chr6 174641706 174641735 -14637819 + AT_rich Low_complexity Low_complexity 1 29 0 2234 55 0 0 chr6 174643242 174643499 -14636055 - AluSp SINE Alu -19 294 38 535 123 0 0 chr6 174643512 174643585 -14635969 - tRNA-Val-GTT tRNA tRNA -3 73 1 359 274 48 48 chr6 174643786 174643932 -14635622 + MIR SINE MIR 43 188 -74 2405 84 3 0 chr6 174644392 174644688 -14634866 + AluSg SINE Alu 1 297 -13 4362 54 52 17 chr6 174645170 174645746 -14633808 - LTR14B LTR ERVK 0 608 13 224 238 16 0 chr6 174646095 174646158 -14633396 + MIR SINE MIR 76 139 -69 3713 178 96 19 chr6 174647068 174647894 -14631660 + L1MB8 LINE L1 5285 6173 -5 270 324 84 27 chr6 174648377 174648602 -14630952 - MIR SINE MIR -12 250 13 2426 65 3 0 chr6 174649754 174650047 -14629507 - AluY SINE Alu -17 294 1 213 283 196 0 chr6 174654212 174654304 -14625250 + MIR SINE MIR 14 123 -139 292 266 117 16 chr6 174654755 174654883 -14624671 - MIR SINE MIR -108 154 14 2233 116 111 27 chr6 174654947 174655228 -14624326 + Tigger3b DNA MER2_type 2 329 -2699 2484 60 0 35 chr6 174655228 174655542 -14624012 - AluY SINE Alu -8 303 1 2233 116 111 27 chr6 174655542 174655665 -14623889 + Tigger3b DNA MER2_type 329 440 -791 2084 156 41 38 chr6 174655668 174656218 -14623336 - MLT2A2 LTR ERVL -7 547 1 4434 131 45 22 chr6 174656218 174656996 -14622558 + Tigger3b DNA MER2_type 436 1231 0 1983 107 10 40 chr6 174657984 174658284 -14621270 - AluSx SINE Alu -13 299 9 180 0 0 0 chr6 174658284 174658304 -14621250 + (T)n Simple_repeat Simple_repeat 1 20 0 1235 172 34 34 chr6 174658408 174658670 -14620884 + AluJo SINE Alu 39 300 -12 718 273 74 51 chr6 174659316 174659918 -14619636 + L1ME1 LINE L1 2192 2779 -3436 959 211 112 53 chr6 174659918 174660240 -14619314 - MER58B DNA MER1_type 0 341 1 718 273 74 51 chr6 174660240 174660362 -14619192 + L1ME1 LINE L1 2779 2897 -3318 2178 111 0 10 chr6 174660362 174660669 -14618885 - AluSq SINE Alu -9 304 1 718 273 74 51 chr6 174660669 174660775 -14618779 + L1ME1 LINE L1 2897 3033 -3182 4427 134 49 32 chr6 174660776 174660965 -14618589 - MER4E LTR ERV1 -9 770 586 2574 40 0 3 chr6 174660965 174661263 -14618291 + AluY SINE Alu 1 297 -14 4427 134 49 32 chr6 174661263 174661828 -14617726 - MER4E LTR ERV1 -193 586 3 594 285 69 22 chr6 174661835 174662196 -14617358 + L1ME1 LINE L1 3027 3404 -2811 635 210 21 28 chr6 174662215 174662358 -14617196 + L1ME1 LINE L1 4934 5075 -1140 3400 115 15 17 chr6 174662362 174662884 -14616670 - LTR9B LTR ERV1 0 644 124 805 96 17 0 chr6 174662892 174663007 -14616547 + BC200 scRNA scRNA 14 130 -70 353 48 161 0 chr6 174663018 174663080 -14616474 - LTR9B LTR ERV1 -571 73 2 859 203 34 100 chr6 174663105 174663203 -14616351 + L1ME1 LINE L1 5127 5230 -1005 1302 190 22 0 chr6 174663203 174663472 -14616082 + L1MA6 LINE L1 6026 6300 0 859 203 34 100 chr6 174663472 174663494 -14616060 + L1ME1 LINE L1 5230 5252 -983 2358 78 0 0 chr6 174663494 174663820 -14615734 - AluY SINE Alu 0 326 1 859 203 34 100 chr6 174663820 174664007 -14615547 + L1ME1 LINE L1 5252 5450 -785 1405 156 65 91 chr6 174664007 174664151 -14615403 + MER2 DNA MER2_type 1 147 -197 2097 115 25 0 chr6 174664151 174664430 -14615124 - AluSx SINE Alu -26 286 1 1405 156 65 91 chr6 174664430 174664638 -14614916 + MER2 DNA MER2_type 147 344 0 859 203 34 100 chr6 174664638 174664752 -14614802 + L1ME1 LINE L1 5450 5504 -731 2446 84 0 3 chr6 174664752 174665062 -14614492 + AluY SINE Alu 1 309 -2 859 203 34 100 chr6 174665062 174665113 -14614441 + L1ME1 LINE L1 5504 5557 -678 2244 112 3 0 chr6 174665113 174665418 -14614136 + AluSp SINE Alu 1 306 -7 1628 130 71 11 chr6 174665459 174665774 -14613780 - AluSx SINE Alu 0 331 1 6068 149 20 2 chr6 174665775 174666968 -14612586 - L1P4 LINE L1 -670 5491 4282 904 201 80 13 chr6 174666966 174667254 -14612300 + L1ME1 LINE L1 5821 6230 -5 * 233 196 43 167 chr6 174667263 174667359 -14612195 + L1M4 LINE L1 3338 3414 -2732 2640 62 3 0 chr6 174667359 174667667 -14611887 - AluSc SINE Alu 0 309 1 233 196 43 167 chr6 174667667 174667708 -14611846 + L1M4 LINE L1 3414 3458 -2688 431 178 27 0 chr6 174667716 174667789 -14611765 + AluS SINE Alu 3 77 -235 456 82 0 0 chr6 174668084 174668157 -14611397 + AluSc SINE Alu 237 309 0 244 254 45 0 chr6 174668186 174668253 -14611301 - L1M4 LINE L1 -2739 3407 3338 916 203 73 7 chr6 174668262 174668540 -14611014 - L1ME1 LINE L1 -5 6161 5761 262 124 12 6 chr6 174668544 174668596 -14610958 + Alu SINE Alu 256 291 -11 618 310 81 14 chr6 174668622 174669057 -14610497 + L1M4 LINE L1 3479 3942 -2204 328 286 212 15 chr6 174669225 174669428 -14610126 + MIR SINE MIR 2 244 -18 1305 232 0 40 chr6 174669457 174669617 -14609937 - AluJo SINE Alu -22 290 146 2061 136 0 0 chr6 174669617 174669903 -14609651 - AluSx SINE Alu -26 286 1 1305 232 0 40 chr6 174669903 174670044 -14609510 - AluJo SINE Alu -166 146 1 22 70 0 0 chr6 174670580 174670623 -14608931 + AT_rich Low_complexity Low_complexity 1 43 0 2095 107 7 17 chr6 174670928 174671218 -14608336 + AluSx SINE Alu 1 287 -25 217 284 30 45 chr6 174671676 174671810 -14607744 + MIR SINE MIR 85 216 -46 238 224 105 53 chr6 174671963 174672039 -14607515 - L2 LINE L2 -59 3213 3134 854 101 0 31 chr6 174672462 174672591 -14606963 + FLAM_A SINE Alu 18 142 0 1298 94 0 0 chr6 174673048 174673208 -14606346 + AluSc SINE Alu 1 160 -149 526 291 129 43 chr6 174673285 174673759 -14605795 - L1MC4 LINE L1 -93 7949 7331 2069 92 29 4 chr6 174673901 174674182 -14605372 + AluY SINE Alu 2 289 -22 1816 164 20 50 chr6 174674335 174674737 -14604817 - MLT1B LTR MaLR 0 390 1 212 261 49 92 chr6 174675253 174675395 -14604159 + L3b LINE CR1 1279 1414 -169 1904 114 79 7 chr6 174676394 174676674 -14602880 - AluSx SINE Alu -12 300 1 1669 174 7 17 chr6 174677763 174678056 -14601498 + AluJo SINE Alu 17 306 -6 1710 165 50 27 chr6 174678264 174678561 -14600993 + 7SLRNA srpRNA srpRNA 1 304 -16 28 48 0 0 chr6 174678588 174678630 -14600924 + AT_rich Low_complexity Low_complexity 1 42 0 318 274 98 0 chr6 174678657 174678810 -14600744 - L1MC4 LINE L1 -94 7948 7781 2025 94 0 0 chr6 174679034 174679319 -14600235 - AluSx SINE Alu 0 322 38 2237 99 0 0 chr6 174679361 174679643 -14599911 + AluY SINE Alu 1 282 -29 24 0 0 0 chr6 174679643 174679667 -14599887 + AT_rich Low_complexity Low_complexity 1 24 0 2739 42 0 0 chr6 174680174 174680485 -14599069 - AluY SINE Alu 0 311 1 2051 134 27 0 chr6 174680518 174680817 -14598737 + AluJb SINE Alu 1 307 -5 1937 128 14 0 chr6 174681515 174681796 -14597758 + AluSq SINE Alu 6 290 -23 334 218 115 0 chr6 174682124 174682202 -14597352 + MER67A LTR ERV1 2 88 -455 * 860 216 96 47 chr6 174682199 174682616 -14596938 + MER67A LTR ERV1 6 543 0 1973 128 7 33 chr6 174683291 174683459 -14596095 - AluSq SINE Alu -17 296 138 2338 101 0 0 chr6 174683459 174683756 -14595798 - AluSc SINE Alu -12 297 1 1973 128 7 33 chr6 174683756 174683891 -14595663 - AluSq SINE Alu -175 138 1 224 382 100 6 chr6 174683967 174684137 -14595417 + L3b LINE CR1 1322 1507 -76 213 36 0 0 chr6 174684406 174684412 -14595142 + (T)n Simple_repeat Simple_repeat 1 6 -22 2568 64 0 3 chr6 174684412 174684723 -14594831 + AluY SINE Alu 1 310 -1 213 36 0 0 chr6 174684723 174684744 -14594810 + (T)n Simple_repeat Simple_repeat 5 28 0 1649 168 0 7 chr6 174685310 174685590 -14593964 - AluJo SINE Alu -34 278 1 212 265 132 0 chr6 174686127 174686195 -14593359 - L2 LINE L2 -24 3248 3172 309 287 17 0 chr6 174686239 174686354 -14593200 - L2 LINE L2 -950 2364 2248 1216 195 84 92 chr6 174687112 174687481 -14592073 - MLT1A2 LTR MaLR -8 366 1 201 210 32 81 chr6 174688057 174688119 -14591435 - L2 LINE L2 -3 3269 3211 196 266 190 0 chr6 174688788 174688867 -14590687 + MIR SINE MIR 153 246 -16 27 49 0 0 chr6 174688889 174688930 -14590624 + AT_rich Low_complexity Low_complexity 1 41 0 1468 112 12 32 chr6 174690363 174690613 -14588941 - L1MA5A LINE L1 -10 6287 6043 219 167 0 24 chr6 174691227 174691248 -14588306 + A-rich Low_complexity Low_complexity 5 25 -20 2223 91 0 28 chr6 174691248 174691566 -14587988 + AluY SINE Alu 1 309 -2 219 167 0 24 chr6 174691566 174691586 -14587968 + A-rich Low_complexity Low_complexity 25 45 0 2253 64 0 61 chr6 174693659 174693984 -14585570 + AluY SINE Alu 1 305 -6 2173 94 7 0 chr6 174693984 174694281 -14585273 + AluSg SINE Alu 1 299 -11 1082 138 0 0 chr6 174694281 174694441 -14585113 + AluSg/x SINE Alu 135 294 -16 2090 117 0 0 chr6 174695081 174695381 -14584173 - AluSq SINE Alu -9 304 5 2677 26 0 0 chr6 174695535 174695841 -14583713 - AluYb8 SINE Alu -12 306 1 425 215 76 56 chr6 174697087 174697231 -14582323 + MIR SINE MIR 2 148 -114 1741 113 0 0 chr6 174697270 174697508 -14582046 + AluSx SINE Alu 60 297 -15 1475 191 64 22 chr6 174697595 174698010 -14581544 - LTR48 LTR ERV1 0 787 255 481 162 42 127 chr6 174698005 174698053 -14581501 - LTR48 LTR ERV1 -657 130 80 * 1398 112 67 36 chr6 174698053 174698276 -14581278 - MER30 DNA MER1_type 0 230 1 481 162 42 127 chr6 174698276 174698315 -14581239 - LTR48 LTR ERV1 -707 80 57 2141 107 0 7 chr6 174698315 174698613 -14580941 + AluSg SINE Alu 1 296 -14 481 162 42 127 chr6 174698613 174698666 -14580888 - LTR48 LTR ERV1 -730 57 1 2353 70 3 0 chr6 174700911 174701210 -14578344 + AluSp SINE Alu 1 300 -13 27 0 0 0 chr6 174701404 174701431 -14578123 + AT_rich Low_complexity Low_complexity 1 27 0 2409 71 3 0 chr6 174702894 174703202 -14576352 + AluSp SINE Alu 1 309 -4 1927 166 131 75 chr6 174703788 174704136 -14575418 - MER34C LTR ERV1 0 585 258 2152 102 26 0 chr6 174704136 174704439 -14575115 - AluY SINE Alu 0 311 1 1927 166 131 75 chr6 174704439 174704503 -14575051 - MER34C LTR ERV1 -327 258 199 2277 87 0 13 chr6 174704503 174704815 -14574739 - AluSq SINE Alu -5 308 1 1927 166 131 75 chr6 174704815 174704950 -14574604 - MER34C LTR ERV1 -386 199 6 1540 69 28 5 chr6 174705195 174705412 -14574142 + L1PA5 LINE L1 5925 6146 -8 23 33 0 0 chr6 174705412 174705442 -14574112 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr6 174705551 174705575 -14573979 + AT_rich Low_complexity Low_complexity 1 24 0 1451 164 19 0 chr6 174705576 174705839 -14573715 - L1MB2 LINE L1 0 6171 5904 2274 127 15 51 chr6 174705839 174706234 -14573320 - MER4D LTR ERV1 -1 902 522 629 110 0 11 chr6 174706259 174706350 -14573204 - AluSg SINE Alu -31 278 189 708 125 0 0 chr6 174706352 174706456 -14573098 - AluSg SINE Alu -205 105 2 2954 136 40 72 chr6 174706457 174707010 -14572544 - MER4D LTR ERV1 -368 535 1 2139 118 29 6 chr6 174707010 174707350 -14572204 - L1MB2 LINE L1 -275 5908 5561 1405 240 17 42 chr6 174707350 174707709 -14571845 - MER4D LTR ERV1 0 903 554 1604 168 31 3 chr6 174707769 174708055 -14571499 - MER49 LTR ERV1 -629 294 1 1334 146 73 18 chr6 174708055 174708329 -14571225 - L1M3 LINE L1 -616 5567 5279 386 304 7 22 chr6 174708392 174708530 -14571024 - L2 LINE L2 -1 3271 3136 499 292 261 29 chr6 174708637 174709032 -14570522 + L2 LINE L2 2147 2449 -865 2077 87 10 10 chr6 174709032 174709330 -14570224 - AluSq SINE Alu -15 298 1 499 292 261 29 chr6 174709330 174709581 -14569973 + L2 LINE L2 2449 2943 -371 260 200 36 0 chr6 174709583 174709638 -14569916 + L2 LINE L2 3212 3268 -4 3046 106 38 8 chr6 174709727 174710198 -14569356 - LTR22B LTR ERVK -3 489 5 24 32 0 0 chr6 174710288 174710319 -14569235 + AT_rich Low_complexity Low_complexity 1 31 0 1878 149 60 26 chr6 174710414 174710764 -14568790 - MLT1A1 LTR MaLR 0 365 4 1900 143 3 7 chr6 174711024 174711324 -14568230 - AluSx SINE Alu -13 299 1 253 328 34 17 chr6 174711364 174711541 -14568013 - L2 LINE L2 -1007 2307 2128 6398 44 15 13 chr6 174711611 174712389 -14567165 - LTR17 LTR ERV1 0 780 1 390 214 45 0 chr6 174712520 174712609 -14566945 - L2 LINE L2 -1 3312 3220 202 262 95 24 chr6 174712631 174712715 -14566839 - L2 LINE L2 -1497 1817 1728 267 311 89 0 chr6 174713462 174713552 -14566002 + L2 LINE L2 3168 3265 -7 1997 112 3 13 chr6 174715265 174715569 -14563985 - AluSq SINE Alu -12 301 1 1830 135 7 11 chr6 174715586 174715868 -14563686 - AluJo SINE Alu -31 281 1 339 316 75 59 chr6 174716254 174716428 -14563126 + L2 LINE L2 2996 3179 -134 1245 165 58 5 chr6 174716428 174716652 -14562902 - MER46A DNA MER2_type 0 236 1 339 316 75 59 chr6 174716652 174716784 -14562770 + L2 LINE L2 3179 3307 -6 306 269 213 6 chr6 174718056 174718216 -14561338 - L3b LINE CR1 -258 1325 1133 201 261 114 34 chr6 174718661 174718749 -14560805 + MIR SINE MIR 56 150 -112 21 0 0 0 chr6 174718967 174718988 -14560566 + AT_rich Low_complexity Low_complexity 1 21 0 5435 114 43 11 chr6 174719170 174720004 -14559550 + L1PA15 LINE L1 5303 6163 -2 195 42 0 0 chr6 174721166 174721190 -14558364 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 505 237 9 9 chr6 174721192 174721306 -14558248 - FLAM_C SINE Alu -28 115 2 326 343 22 8 chr6 174722238 174722372 -14557182 - MER5B DNA MER1_type -42 136 1 221 118 20 59 chr6 174723362 174723413 -14556141 + L2 LINE L2 3191 3239 -74 1526 134 29 40 chr6 174724796 174725072 -14554482 - AluJb SINE Alu -11 301 29 392 289 32 21 chr6 174725137 174725324 -14554230 + MER5A DNA MER1_type 1 189 0 1513 169 13 33 chr6 174725399 174725700 -14553854 - AluJo SINE Alu -17 295 1 397 153 0 69 chr6 174725724 174725796 -14553758 - AluJ/FRAM SINE Alu -11 291 225 705 180 23 8 chr6 174725796 174725924 -14553630 - AluJo/FLAM SINE Alu -172 130 1 734 274 84 43 chr6 174725958 174726257 -14553297 + MLT1B LTR MaLR 1 311 -79 339 75 0 75 chr6 174726332 174726385 -14553169 + MLT2D LTR ERVL 366 414 0 3591 221 66 38 chr6 174726385 174727594 -14551960 + MLT1B-int LTR MaLR 1 1646 -5 1179 229 73 48 chr6 174727597 174727771 -14551783 + MLT1B LTR MaLR 4 172 -218 2013 68 38 0 chr6 174727771 174728036 -14551518 + AluY SINE Alu 16 290 -21 1179 229 73 48 chr6 174728036 174728233 -14551321 + MLT1B LTR MaLR 172 384 -6 22 35 0 0 chr6 174728264 174728293 -14551261 + AT_rich Low_complexity Low_complexity 1 29 0 1815 126 3 36 chr6 174728304 174728441 -14551113 + AluSx SINE Alu 1 141 -171 1882 126 6 46 chr6 174728441 174728766 -14550788 + AluSx SINE Alu 1 312 0 1815 126 3 36 chr6 174728766 174728929 -14550625 + AluSx SINE Alu 141 291 -21 388 300 100 0 chr6 174729317 174729447 -14550107 - L2 LINE L2 0 3313 3171 800 176 0 8 chr6 174729458 174729589 -14549965 + FLAM_C SINE Alu 1 130 -3 2010 105 7 0 chr6 174731628 174731932 -14547622 + AluSc SINE Alu 1 306 0 2715 230 90 48 chr6 174732042 174732903 -14546651 - L1ME2 LINE L1 -6 6158 5335 1005 0 0 23 chr6 174732903 174733031 -14546523 + (TTTC)n Simple_repeat Simple_repeat 3 127 0 1930 99 4 7 chr6 174733031 174733303 -14546251 - AluSc SINE Alu -38 271 1 2715 230 90 48 chr6 174733303 174733366 -14546188 - L1ME2 LINE L1 -829 5335 5276 2147 105 0 3 chr6 174733366 174733670 -14545884 - AluSg SINE Alu -7 303 1 2715 230 90 48 chr6 174733670 174733947 -14545607 - L1ME2 LINE L1 -888 5276 4904 228 234 110 97 chr6 174734258 174734403 -14545151 - MIR SINE MIR -6 256 110 972 159 0 0 chr6 174734706 174734857 -14544697 - FRAM SINE Alu -26 150 1 26 30 0 0 chr6 174735907 174735940 -14543614 + AT_rich Low_complexity Low_complexity 1 33 0 1840 135 36 20 chr6 174736616 174736920 -14542634 - AluJb SINE Alu -3 309 1 2026 115 10 0 chr6 174737128 174737424 -14542130 + AluSp SINE Alu 1 299 -14 1333 198 7 25 chr6 174738433 174738716 -14540838 - AluJo SINE Alu -30 282 5 1867 109 33 62 chr6 174742351 174742655 -14536899 + AluSx SINE Alu 1 295 -17 2283 75 7 33 chr6 174745917 174746223 -14533331 - AluY SINE Alu -13 298 1 871 152 0 15 chr6 174746227 174746359 -14533195 - FLAM_C SINE Alu -3 130 1 308 254 110 0 chr6 174746365 174746483 -14533071 - HAL1 LINE L1 -165 2342 2212 269 212 117 67 chr6 174746511 174746690 -14532864 - HAL1 LINE L1 -341 2166 1979 276 267 52 95 chr6 174746840 174746901 -14532653 - L2 LINE L2 -1 3312 3257 996 224 33 0 chr6 174746901 174747115 -14532439 + MER58A DNA MER1_type 4 224 0 276 267 52 95 chr6 174747115 174747169 -14532385 - L2 LINE L2 -56 3257 3202 180 111 0 0 chr6 174747425 174747452 -14532102 + (T)n Simple_repeat Simple_repeat 1 27 0 622 232 71 0 chr6 174747645 174747813 -14531741 - L1MC5 LINE L1 -533 7428 7249 2619 58 3 0 chr6 174747847 174748155 -14531399 - AluY SINE Alu -2 309 1 277 41 0 41 chr6 174749763 174749812 -14529742 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 2292 113 3 6 chr6 174750503 174750814 -14528740 - AluSq SINE Alu -3 310 1 421 284 20 20 chr6 174751952 174752100 -14527454 + MIR3 SINE MIR 38 185 -23 2648 34 0 0 chr6 174753684 174753978 -14525576 + AluY SINE Alu 1 294 -17 2423 100 0 0 chr6 174754950 174755250 -14524304 - AluSq SINE Alu -9 304 5 2272 79 4 0 chr6 174758102 174758381 -14521173 - AluSg SINE Alu -30 280 1 251 146 0 21 chr6 174758681 174758729 -14520825 + MER34 LTR ERV1 67 113 -429 681 209 43 90 chr6 174758747 174758967 -14520587 + MER39 LTR ERV1 330 536 -171 2169 82 71 0 chr6 174758967 174759249 -14520305 + AluSx SINE Alu 1 302 -10 681 209 43 90 chr6 174759249 174759306 -14520248 + MER39 LTR ERV1 536 594 -113 * 1480 242 36 0 chr6 174759305 174759635 -14519919 - MER7A DNA MER2_type -6 340 1 251 202 202 21 chr6 174759636 174759730 -14519824 + MER39 LTR ERV1 597 707 0 2190 178 86 72 chr6 174760412 174761065 -14518489 + MER63C DNA MER1_type 2 663 -267 433 238 0 0 chr6 174761064 174761165 -14518389 + MER63C DNA MER1_type 823 923 -7 * 290 265 39 29 chr6 174761304 174761406 -14518148 - L2 LINE L2 -1 3312 3210 1938 139 3 17 chr6 174761778 174762089 -14517465 - AluJo SINE Alu 0 307 1 554 272 77 38 chr6 174762095 174762330 -14517224 + L1M4 LINE L1 3146 3389 -2757 285 262 64 32 chr6 174762342 174762529 -14517025 + L1M4 LINE L1 3492 3684 -2462 324 128 0 0 chr6 174762587 174762634 -14516920 + AluJ/FRAM SINE Alu 232 278 -24 1614 96 0 0 chr6 174762635 174762856 -14516698 + AluSg/x SINE Alu 86 306 0 1940 151 7 3 chr6 174762867 174763158 -14516396 + AluJb SINE Alu 1 292 -20 210 143 0 0 chr6 174763160 174763195 -14516359 + (GGGGA)n Simple_repeat Simple_repeat 3 37 0 632 245 144 57 chr6 174763323 174763431 -14516123 + MER20B DNA MER1_type 214 311 -472 2509 70 0 16 chr6 174763431 174763747 -14515807 + AluY SINE Alu 1 311 0 632 245 144 57 chr6 174763747 174764021 -14515533 + MER20B DNA MER1_type 311 629 -154 2379 104 0 16 chr6 174764155 174764472 -14515082 - AluSx SINE Alu 0 312 1 400 130 0 0 chr6 174764586 174764640 -14514914 - Alu SINE Alu -258 55 2 216 103 0 0 chr6 174764641 174764670 -14514884 + L2 LINE L2 2615 2643 -671 2212 147 19 19 chr6 174764670 174765045 -14514509 + THE1C LTR MaLR 1 375 0 3944 123 143 1 chr6 174765047 174765732 -14513822 + THE1C-int LTR MaLR 3 784 -796 311 301 81 23 chr6 174765832 174766005 -14513549 + MLT1H LTR MaLR 123 305 -244 253 274 71 18 chr6 174766017 174766130 -14513424 + MLT1F LTR MaLR 248 366 -176 281 275 25 0 chr6 174766299 174766379 -14513175 - HAL1 LINE L1 -1845 662 581 2485 71 0 3 chr6 174766417 174766714 -14512840 - AluY SINE Alu -13 298 3 1229 114 6 0 chr6 174766715 174766881 -14512673 - AluSg/x SINE Alu -12 300 134 2455 81 0 7 chr6 174766881 174767189 -14512365 - AluSq SINE Alu -7 306 1 1785 174 0 14 chr6 174767200 174767487 -14512067 - AluJo SINE Alu -24 288 6 2397 99 0 3 chr6 174767832 174768144 -14511410 - AluSq SINE Alu -2 311 1 348 250 0 0 chr6 174768196 174768264 -14511290 + MER5B DNA MER1_type 72 139 -39 1236 157 38 51 chr6 174768271 174768507 -14511047 + AluJo SINE Alu 64 296 -16 217 209 0 23 chr6 174768508 174768551 -14511003 - MER5B DNA MER1_type -132 46 5 1495 141 0 0 chr6 174768566 174768779 -14510775 - AluJb SINE Alu -99 213 1 870 267 20 13 chr6 174768782 174769055 -14510499 - L1ME LINE L1 -399 5771 5490 277 330 9 28 chr6 174769390 174769499 -14510055 - MIR SINE MIR -74 134 28 744 291 164 11 chr6 174770220 174770684 -14508870 + L2 LINE L2 2719 3268 -4 1907 145 19 19 chr6 174770823 174771134 -14508420 + AluJb SINE Alu 1 311 -1 187 309 29 15 chr6 174771559 174771627 -14507927 - MIR3 SINE MIR -42 166 98 2097 142 0 0 chr6 174772038 174772333 -14507221 - AluSc SINE Alu -14 295 1 259 296 152 21 chr6 174773627 174773870 -14505684 + L2 LINE L2 2580 2854 -460 301 344 175 24 chr6 174773942 174774233 -14505321 + L2 LINE L2 2937 3271 -1 11821 120 10 29 chr6 174775048 174777680 -14501874 + L1PA10 LINE L1 3527 6168 0 215 330 128 0 chr6 174777752 174777861 -14501693 + MIR SINE MIR 21 143 -65 417 70 0 0 chr6 174777896 174777953 -14501601 + (TCCCC)n Simple_repeat Simple_repeat 1 57 0 1646 171 27 23 chr6 174777953 174778252 -14501302 - AluJb SINE Alu -12 300 1 370 269 107 13 chr6 174778525 174778674 -14500880 + LTR33 LTR ERVL 11 173 -348 1978 149 10 7 chr6 174779253 174779562 -14499992 + AluJb SINE Alu 1 310 -2 2229 124 0 6 chr6 174780009 174780323 -14499231 - AluSx SINE Alu 0 312 1 449 253 316 0 chr6 174780453 174780611 -14498943 - MIR SINE MIR -15 247 40 1866 135 4 0 chr6 174780717 174780984 -14498570 - AluSg SINE Alu -8 302 35 2398 105 0 0 chr6 174780985 174781291 -14498263 - AluY SINE Alu -5 306 1 1640 205 115 0 chr6 174781549 174781959 -14497595 - MLT1C LTR MaLR -10 457 1 324 0 0 0 chr6 174782299 174782335 -14497219 + (TG)n Simple_repeat Simple_repeat 2 37 0 320 238 0 0 chr6 174782434 174782497 -14497057 - MER81 DNA DNA -51 63 1 643 231 35 15 chr6 174782910 174783113 -14496441 - MER20B DNA MER1_type -31 752 546 860 156 6 81 chr6 174783779 174783952 -14495602 - FAM SINE Alu 0 49 1 190 288 95 101 chr6 174784679 174784735 -14494819 + L2 LINE L2 1018 1073 -2241 539 179 32 116 chr6 174784735 174784793 -14494761 - MER5B DNA MER1_type -4 174 113 2311 96 0 10 chr6 174784793 174785106 -14494448 + AluSg SINE Alu 1 310 0 1982 169 0 0 chr6 174785116 174785418 -14494136 + AluJb SINE Alu 1 302 -10 539 179 32 116 chr6 174785418 174785538 -14494016 - MER5B DNA MER1_type -74 104 1 190 288 95 101 chr6 174785538 174785807 -14493747 + L2 LINE L2 1073 1341 -1973 705 92 0 0 chr6 174785934 174786032 -14493522 + AluSp/q SINE Alu 214 311 -2 505 198 10 0 chr6 174786543 174786639 -14492915 + MER81 DNA DNA 2 98 -16 2438 85 7 0 chr6 174787225 174787531 -14492023 - AluSg SINE Alu -2 308 1 2632 126 13 60 chr6 174787662 174788129 -14491425 - MER65A LTR ERV1 0 445 1 917 219 20 5 chr6 174788129 174788330 -14491224 - MER65A-int LTR ERV1 -1 4870 4667 975 69 0 0 chr6 174788345 174788461 -14491093 - AluSq/x SINE Alu -196 117 2 327 314 0 0 chr6 174788693 174788779 -14490775 - L2 LINE L2 -1 3271 3186 2393 91 3 0 chr6 174789324 174789620 -14489934 + AluSp SINE Alu 1 297 -16 2593 58 0 0 chr6 174789622 174789931 -14489623 + AluY SINE Alu 1 309 -2 712 265 57 62 chr6 174790517 174790853 -14488701 - MLT1I LTR MaLR -3 406 73 2170 120 0 26 chr6 174791973 174792282 -14487272 + AluSx SINE Alu 1 301 -11 572 279 73 0 chr6 174792392 174792557 -14486997 + MIR SINE MIR 83 259 -3 2175 72 22 11 chr6 174792623 174792925 -14486629 + AluSc SINE Alu 1 305 0 207 0 0 0 chr6 174793205 174793228 -14486326 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2347 112 0 0 chr6 174793235 174793540 -14486014 - AluSx SINE Alu -7 305 1 2206 129 0 3 chr6 174793550 174793860 -14485694 - AluY SINE Alu -2 309 1 2352 86 10 3 chr6 174793860 174794152 -14485402 - AluSg SINE Alu -16 294 1 410 278 73 13 chr6 174794178 174794329 -14485225 - MER69A DNA AcHobo -17 160 1 2260 107 7 0 chr6 174794536 174794836 -14484718 + AluSp SINE Alu 1 302 -11 273 293 147 27 chr6 174795541 174795691 -14483863 + L2 LINE L2 3096 3263 -9 364 333 75 15 chr6 174795900 174796101 -14483453 - MIR SINE MIR -18 244 32 187 300 50 17 chr6 174796323 174796383 -14483171 + L2 LINE L2 3250 3311 -2 552 286 42 42 chr6 174796958 174797196 -14482358 - MIR SINE MIR -6 256 19 2564 58 0 0 chr6 174797756 174798050 -14481504 + AluY SINE Alu 1 294 -17 2418 109 0 0 chr6 174798456 174798768 -14480786 + AluSx SINE Alu 1 312 0 226 246 16 0 chr6 174798946 174799007 -14480547 - MER20B DNA MER1_type -203 580 519 820 213 0 12 chr6 174799222 174799382 -14480172 - AluYa8 SINE Alu -29 281 124 1074 149 6 0 chr6 174799568 174799783 -14479771 + AluSg/x SINE Alu 123 338 0 720 22 0 0 chr6 174800646 174800735 -14478819 + L1P LINE L1 4935 5023 -1123 1717 201 0 10 chr6 174801175 174801309 -14478245 + AluSq SINE Alu 1 135 -178 2353 67 0 11 chr6 174801309 174801594 -14477960 + AluY SINE Alu 1 282 -29 7400 29 17 1 chr6 174801594 174803198 -14476356 + L1PA4 LINE L1 4525 6155 0 1717 201 0 10 chr6 174803198 174803371 -14476183 + AluSq SINE Alu 133 306 -7 1618 172 45 7 chr6 174803519 174803809 -14475745 - AluJo SINE Alu -1 311 11 2285 118 0 0 chr6 174804730 174805027 -14474527 + AluJb SINE Alu 1 297 -15 1883 145 0 43 chr6 174806099 174806402 -14473152 + AluJb SINE Alu 1 290 -22 1583 125 0 0 chr6 174807090 174807306 -14472248 + AluSq SINE Alu 53 268 -45 2145 99 11 11 chr6 174807595 174807879 -14471675 - AluSx SINE Alu -28 284 1 2638 56 0 0 chr6 174807996 174808299 -14471255 - AluY SINE Alu -8 303 1 214 306 112 41 chr6 174808389 174808487 -14471067 + MIR3 SINE MIR 98 202 -6 2469 86 0 0 chr6 174808856 174809159 -14470395 - AluSc SINE Alu -6 303 1 1099 183 118 86 chr6 174809553 174809997 -14469557 - LTR56 LTR ERV1 0 445 9 455 223 129 59 chr6 174810568 174810770 -14468784 - MER106A DNA MER1_type 0 236 21 1912 119 23 0 chr6 174810857 174811118 -14468436 - AluSx SINE Alu -15 297 31 1333 107 0 123 chr6 174811307 174811551 -14468003 - AluY SINE Alu -9 302 89 1330 34 7 0 chr6 174811572 174811721 -14467833 - AluYb8 SINE Alu -168 150 1 1431 233 51 58 chr6 174811802 174812288 -14467266 + L1ME LINE L1 4680 5162 -984 1207 114 0 0 chr6 174812532 174812690 -14466864 + AluSg/x SINE Alu 137 294 -18 2058 133 13 7 chr6 174812909 174813218 -14466336 + AluSx SINE Alu 1 311 -1 2553 66 0 3 chr6 174813230 174813533 -14466021 + AluY SINE Alu 1 302 -9 266 73 24 0 chr6 174815036 174815077 -14464477 + (CA)n Simple_repeat Simple_repeat 1 42 0 2266 124 0 22 chr6 174815332 174815647 -14463907 - AluSx SINE Alu -4 308 1 721 222 87 5 chr6 174815675 174815860 -14463694 - MER3 DNA MER1_type -1 208 9 519 206 59 13 chr6 174816707 174816851 -14462703 + L1MB3 LINE L1 6025 6178 -5 247 295 36 18 chr6 174816882 174816994 -14462560 + L1ME LINE L1 5492 5605 -516 2152 98 59 0 chr6 174817004 174817290 -14462264 + AluSg SINE Alu 1 303 -7 2167 119 20 3 chr6 174817314 174817617 -14461937 + AluSx SINE Alu 1 308 -4 1613 154 0 4 chr6 174817967 174818240 -14461314 + AluJb SINE Alu 50 321 0 1875 175 13 10 chr6 174818448 174818757 -14460797 + AluSx SINE Alu 1 310 -2 1704 157 44 27 chr6 174818869 174819163 -14460391 + AluJo SINE Alu 1 299 -13 457 271 13 53 chr6 174819584 174819735 -14459819 + MIR SINE MIR 110 254 -8 376 291 45 77 chr6 174819850 174819954 -14459600 + MIR SINE MIR 21 127 -135 2116 131 3 16 chr6 174819954 174820260 -14459294 - AluSq SINE Alu -11 302 1 376 291 45 77 chr6 174820260 174820271 -14459283 + MIR SINE MIR 127 137 -125 2053 146 3 0 chr6 174820271 174820572 -14458982 - AluJb SINE Alu -10 302 1 376 291 45 77 chr6 174820572 174820675 -14458879 + MIR SINE MIR 137 233 -29 486 284 57 29 chr6 174821004 174821209 -14458345 + MIR SINE MIR 30 245 -17 216 276 11 69 chr6 174821252 174821339 -14458215 - MIR SINE MIR -62 200 119 997 211 64 54 chr6 174822984 174823089 -14456465 - MER33 DNA MER1_type -2263 322 219 2077 131 28 0 chr6 174823089 174823380 -14456174 - AluSx SINE Alu -13 299 1 997 211 64 54 chr6 174823380 174823587 -14455967 - MER33 DNA MER1_type -2366 219 7 183 80 0 0 chr6 174824755 174824780 -14454774 + (TG)n Simple_repeat Simple_repeat 1 25 0 2356 91 3 0 chr6 174826002 174826299 -14453255 - AluSx SINE Alu -4 308 11 203 235 0 0 chr6 174826683 174826734 -14452820 + G-rich Low_complexity Low_complexity 6 56 0 267 163 23 23 chr6 174827117 174827203 -14452351 + (TCCA)n Simple_repeat Simple_repeat 1 86 0 2539 64 3 10 chr6 174827320 174827633 -14451921 + AluY SINE Alu 1 311 0 8932 154 49 38 chr6 174827689 174828301 -14451253 + Ricksha_c DNA DNA 69 673 -2581 4302 74 24 0 chr6 174828301 174828842 -14450712 + MER41A LTR ERV1 1 554 0 8932 154 49 38 chr6 174828842 174829300 -14450254 + Ricksha_c DNA DNA 673 1124 -2130 2033 130 16 10 chr6 174829300 174829607 -14449947 + AluSg SINE Alu 1 309 -1 8932 154 49 38 chr6 174829607 174830320 -14449234 + Ricksha_c DNA DNA 1124 1873 -173 1338 151 18 0 chr6 174830321 174830539 -14449015 - AluJo SINE Alu -5 307 86 763 176 48 0 chr6 174830540 174830705 -14448849 + Ricksha DNA DNA 2675 2847 -7 211 236 126 118 chr6 174830812 174830875 -14448679 - MIR SINE MIR -59 203 142 1702 147 95 40 chr6 174830875 174831138 -14448416 + MER47A DNA MER2_type 2 290 -2033 2019 98 61 0 chr6 174831138 174831415 -14448139 - AluSx SINE Alu -18 294 1 1702 147 95 40 chr6 174831415 174831497 -14448057 + MER47A DNA MER2_type 290 366 0 211 236 126 118 chr6 174831497 174831560 -14447994 - MIR SINE MIR -120 142 76 503 238 25 9 chr6 174833255 174833413 -14446141 + L1MB7 LINE L1 6014 6174 -10 629 205 197 43 chr6 174836090 174836250 -14443304 - MER58 DNA MER1_type -2150 270 136 1809 133 66 19 chr6 174836250 174836564 -14442990 + AluSx SINE Alu 1 327 0 629 205 197 43 chr6 174836564 174836636 -14442918 - MER58 DNA MER1_type -2284 136 1 2530 82 0 0 chr6 174837198 174837504 -14442050 - AluY SINE Alu -5 306 1 233 283 88 35 chr6 174837504 174837617 -14441937 - MIR SINE MIR -117 145 27 752 139 9 0 chr6 174837825 174837940 -14441614 - FRAM SINE Alu -20 156 41 464 155 12 12 chr6 174837945 174838029 -14441525 + AluJo SINE Alu 49 132 -180 1411 97 0 0 chr6 174838029 174838204 -14441350 - AluSp SINE Alu -10 303 129 1013 146 16 73 chr6 174838204 174838396 -14441158 + AluJo SINE Alu 113 293 -19 555 222 39 28 chr6 174838499 174838679 -14440875 + MLT1C LTR MaLR 286 467 0 399 156 33 67 chr6 174839048 174839228 -14440326 + (CACCT)n Simple_repeat Simple_repeat 3 176 0 182 318 71 35 chr6 174839370 174839455 -14440099 + L2 LINE L2 3208 3295 -18 2392 67 0 0 chr6 174839460 174839744 -14439810 + AluY SINE Alu 1 284 -27 225 0 0 0 chr6 174839744 174839769 -14439785 + (CATA)n Simple_repeat Simple_repeat 2 26 0 977 115 0 0 chr6 174839960 174840082 -14439472 + FLAM_C SINE Alu 2 123 -20 220 69 0 0 chr6 174840090 174840119 -14439435 + (TTTA)n Simple_repeat Simple_repeat 4 72 0 2337 71 3 3 chr6 174840119 174840402 -14439152 - AluSp SINE Alu -30 283 1 2015 157 3 0 chr6 174840404 174840710 -14438844 - AluSx SINE Alu -5 307 1 31 0 0 0 chr6 174840711 174840742 -14438812 + AT_rich Low_complexity Low_complexity 1 31 0 189 280 68 68 chr6 174840824 174840956 -14438598 + MIR SINE MIR 35 166 -96 206 337 56 0 chr6 174841498 174841587 -14437967 - MER91B DNA MER1_type -10 180 87 291 246 51 109 chr6 174841601 174841739 -14437815 - MER91B DNA MER1_type -60 130 1 2334 110 0 0 chr6 174841962 174842261 -14437293 - AluSx SINE Alu -13 299 1 1789 202 6 135 chr6 174842693 174842936 -14436618 - L1 LINE L1 -866 5280 5007 1686 145 50 42 chr6 174842936 174843219 -14436335 - AluJb SINE Alu -27 285 1 1789 202 6 135 chr6 174843219 174843647 -14435907 - L1 LINE L1 -1139 5007 4696 4505 152 23 46 chr6 174843655 174843873 -14435681 + L1MB3 LINE L1 5297 5519 -664 2053 99 17 34 chr6 174843873 174844167 -14435387 + AluSc SINE Alu 1 289 -20 4505 152 23 46 chr6 174844167 174844856 -14434698 + L1MB3 LINE L1 5519 6183 0 1042 192 67 5 chr6 174845142 174845350 -14434204 - MER58A DNA MER1_type -1 223 3 2038 160 3 0 chr6 174845781 174846088 -14433466 + AluSx SINE Alu 1 308 -4 937 162 0 0 chr6 174846383 174846525 -14433029 + FLAM_C SINE Alu 1 142 -1 1591 169 6 86 chr6 174846535 174846693 -14432861 + AluJb SINE Alu 1 121 -191 2018 151 17 0 chr6 174846693 174846991 -14432563 + AluSx SINE Alu 1 303 -9 1591 169 6 86 chr6 174846991 174847157 -14432397 + AluJb SINE Alu 121 299 -13 21 0 0 0 chr6 174847164 174847185 -14432369 + AT_rich Low_complexity Low_complexity 1 21 0 2364 70 0 45 chr6 174847406 174847720 -14431834 - AluY SINE Alu -11 300 1 2737 42 0 3 chr6 174848088 174848400 -14431154 - AluY SINE Alu 0 311 1 2393 91 3 0 chr6 174848402 174848698 -14430856 - AluSp SINE Alu -16 297 1 327 314 0 0 chr6 174849243 174849329 -14430225 + L2 LINE L2 3186 3271 -1 1372 158 0 18 chr6 174850240 174850462 -14429092 + AluJo SINE Alu 1 218 -94 298 163 0 0 chr6 174850516 174850586 -14428968 + Alu SINE Alu 234 303 0 627 259 103 23 chr6 174850587 174850850 -14428704 - L2 LINE L2 -20 3293 3010 186 222 0 0 chr6 174851076 174851121 -14428433 - L2 LINE L2 -788 2526 2482 221 200 11 67 chr6 174851850 174851940 -14427614 + (CGGGG)n Simple_repeat Simple_repeat 5 89 0 180 0 0 0 chr6 174852398 174852418 -14427136 + (CCCCAG)n Simple_repeat Simple_repeat 1 20 0 2553 62 3 0 chr6 174852929 174853235 -14426319 + AluSp SINE Alu 1 307 -6 229 271 29 14 chr6 174853576 174853646 -14425908 + MIR3 SINE MIR 93 163 -45 2455 94 0 0 chr6 174854838 174855147 -14424407 + AluSx SINE Alu 1 309 -3 2256 97 3 3 chr6 174856732 174857031 -14422523 + AluSc SINE Alu 2 300 -9 1632 134 34 110 chr6 174857956 174858284 -14421270 + AluJo SINE Alu 1 303 -9 294 155 107 83 chr6 174859257 174859341 -14420213 + Tigger5 DNA MER2_type 2237 2322 -1 2400 74 0 43 chr6 174860563 174860886 -14418668 + AluY SINE Alu 1 309 -2 195 311 78 0 chr6 174861279 174861369 -14418185 - MIR SINE MIR -151 111 15 1976 152 0 3 chr6 174863456 174863752 -14415802 - AluJb SINE Alu -17 295 1 219 311 179 9 chr6 174865298 174865404 -14414150 + MIR3 SINE MIR 35 158 -50 256 304 49 10 chr6 174865594 174865696 -14413858 + MIR SINE MIR 132 237 -25 1909 151 33 39 chr6 174865842 174866025 -14413529 - MER47A DNA MER2_type -1957 366 184 1530 180 18 4 chr6 174866025 174866303 -14413251 - AluJo SINE Alu -9 303 22 1909 151 33 39 chr6 174866303 174866483 -14413071 - MER47A DNA MER2_type -2139 184 5 196 232 74 63 chr6 174867754 174867849 -14411705 + MIR SINE MIR 22 117 -145 213 211 0 0 chr6 174868257 174868309 -14411245 + (CA)n Simple_repeat Simple_repeat 1 52 0 305 298 136 34 chr6 174868825 174869214 -14410340 + L2 LINE L2 2842 3272 0 296 294 11 17 chr6 174869324 174869504 -14410050 + (TGAG)n Simple_repeat Simple_repeat 2 180 0 225 237 0 0 chr6 174869572 174869631 -14409923 + G-rich Low_complexity Low_complexity 4 62 0 311 263 30 0 chr6 174869632 174869765 -14409789 + (TGAG)n Simple_repeat Simple_repeat 4 140 0 276 305 53 11 chr6 174871863 174871958 -14407596 + MIR3 SINE MIR 108 206 -2 2211 124 0 3 chr6 174872477 174872775 -14406779 + AluSx SINE Alu 2 298 -14 2056 206 146 4 chr6 174873842 174874382 -14405172 + MER44D DNA MER2_type 1 617 -88 3337 146 46 12 chr6 174875147 174875708 -14403846 + LTR19B LTR ERV1 1 580 0 6083 111 28 34 chr6 174875708 174876648 -14402906 + LTR19B-int LTR ERV1 1 936 -4650 2334 96 3 3 chr6 174876648 174876949 -14402605 - AluSc SINE Alu -8 301 1 6083 111 28 34 chr6 174876949 174877022 -14402532 + LTR19B-int LTR ERV1 936 1008 -4578 31517 58 7 4 chr6 174877022 174878206 -14401348 + L1PA5 LINE L1 1137 2316 -3838 207 0 0 0 chr6 174878206 174878229 -14401325 + (CAA)n Simple_repeat Simple_repeat 2 24 0 31517 58 7 4 chr6 174878229 174882048 -14397506 + L1PA5 LINE L1 2316 6151 -3 2317 204 24 42 chr6 174882054 174882608 -14396946 + LTR19B-int LTR ERV1 4852 5395 -2023 4548 112 17 4 chr6 174882667 174883374 -14396180 + LTR19B-int LTR ERV1 3783 4498 -1088 * 6017 94 8 3 chr6 174883372 174884235 -14395319 + LTR19B-int LTR ERV1 4719 5585 -1 3187 145 36 46 chr6 174884236 174884822 -14394732 + LTR19B LTR ERV1 1 580 0 356 252 17 25 chr6 174887224 174887343 -14392211 + Tigger7 DNA MER2_type 2374 2491 0 2189 125 0 0 chr6 174887425 174887722 -14391832 - AluJb SINE Alu -15 297 1 1732 174 35 0 chr6 174888487 174888775 -14390779 - AluJo SINE Alu -14 298 1 23 0 0 0 chr6 174890461 174890484 -14389070 + AT_rich Low_complexity Low_complexity 1 23 0 285 29 0 0 chr6 174891007 174891041 -14388513 + (CA)n Simple_repeat Simple_repeat 2 35 0 1157 119 0 0 chr6 174891041 174891200 -14388354 - AluSg/x SINE Alu -12 298 140 195 184 0 0 chr6 174891816 174891854 -14387700 + (CA)n Simple_repeat Simple_repeat 1 38 0 283 236 335 16 chr6 174891861 174892052 -14387502 + L1MEc LINE L1 132 383 -6013 1197 256 95 34 chr6 174892085 174892642 -14386912 + L1MEc LINE L1 543 1273 -5123 1494 184 66 12 chr6 174892642 174892962 -14386592 + MER1B DNA MER1_type 1 337 0 1197 256 95 34 chr6 174892962 174893281 -14386273 + L1MEc LINE L1 1273 1571 -4825 1449 147 132 23 chr6 174893291 174893556 -14385998 + AluJo SINE Alu 1 294 -18 1880 238 116 31 chr6 174893569 174894171 -14385383 + L1ME1 LINE L1 5414 6241 -93 402 267 67 97 chr6 174894248 174894394 -14385160 + MIR SINE MIR 34 183 -79 2280 110 7 0 chr6 174894394 174894694 -14384860 - AluSg SINE Alu -8 302 1 1585 124 9 0 chr6 174894696 174894906 -14384648 - AluSp SINE Alu -101 212 1 402 267 67 97 chr6 174894906 174894996 -14384558 + MIR SINE MIR 184 262 0 2480 96 0 3 chr6 174895402 174895714 -14383840 + AluSx SINE Alu 1 311 -1 1774 107 71 18 chr6 174895723 174896003 -14383551 + AluSp SINE Alu 1 295 -18 2374 74 40 0 chr6 174897216 174897551 -14382003 + AluY SINE Alu 1 347 0 774 242 64 54 chr6 174898220 174898376 -14381178 + MLT1A1 LTR MaLR 1 154 -211 1670 160 17 35 chr6 174898376 174898664 -14380890 + AluJb SINE Alu 6 288 -24 774 242 64 54 chr6 174898664 174898912 -14380642 + MLT1A1 LTR MaLR 154 365 0 2591 77 8 0 chr6 174899203 174899555 -14379999 + THE1A LTR MaLR 1 355 0 2437 82 7 0 chr6 174899958 174900264 -14379290 + AluY SINE Alu 1 308 -3 1752 230 46 11 chr6 174900274 174900839 -14378715 - L1ME3A LINE L1 -48 6122 5447 3407 132 71 41 chr6 174901161 174901199 -14378355 + L1MC1 LINE L1 5634 5669 -664 2196 105 37 0 chr6 174901199 174901494 -14378060 + AluSq SINE Alu 1 306 -7 3407 132 71 41 chr6 174901494 174901778 -14377776 + L1MC1 LINE L1 5669 5943 -390 2357 95 20 0 chr6 174901778 174902084 -14377470 + AluSx SINE Alu 1 312 0 3407 132 71 41 chr6 174902084 174902425 -14377129 + L1MC1 LINE L1 5943 6318 -15 566 308 116 11 chr6 174902957 174903229 -14376325 - L1ME LINE L1 -343 5778 5459 1783 160 0 63 chr6 174903229 174903446 -14376108 - AluJo SINE Alu -1 311 121 1607 126 0 51 chr6 174903446 174903701 -14375853 + AluSx SINE Alu 55 296 -16 1783 160 0 63 chr6 174903701 174903815 -14375739 - AluJo SINE Alu -191 121 1 566 308 116 11 chr6 174903815 174903896 -14375658 - L1ME LINE L1 -662 5459 5388 300 267 20 40 chr6 174903957 174904058 -14375496 - L2 LINE L2 -1 3312 3214 1679 212 71 38 chr6 174905030 174905416 -14374138 + L1MB7 LINE L1 5713 6119 -65 2306 77 0 24 chr6 174905416 174905734 -14373820 + AluSc SINE Alu 1 311 0 1679 212 71 38 chr6 174905734 174905798 -14373756 + L1MB7 LINE L1 6119 6179 -5 280 245 271 45 chr6 174905821 174905976 -14373578 - MIR SINE MIR -71 191 2 206 222 127 0 chr6 174905982 174906045 -14373509 + L3 LINE CR1 1329 1399 -178 2363 100 10 3 chr6 174907430 174907740 -14371814 + AluSq SINE Alu 1 312 -1 197 393 71 0 chr6 174908394 174908506 -14371048 + MIR SINE MIR 47 166 -96 830 163 0 0 chr6 174908549 174908678 -14370876 + FLAM_A SINE Alu 1 129 -4 296 216 40 14 chr6 174908988 174909062 -14370492 - MER81 DNA DNA -32 82 7 404 162 0 0 chr6 174909443 174909511 -14370043 - AluJ/FLAM SINE Alu -243 69 2 719 326 9 9 chr6 174909570 174909797 -14369757 + MIR SINE MIR 2 228 -34 21 36 0 0 chr6 174910042 174910070 -14369484 + GC_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr6 174910384 174910416 -14369138 + GC_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 174911167 174911189 -14368365 + AT_rich Low_complexity Low_complexity 1 22 0 195 303 0 40 chr6 174911507 174911583 -14367971 + MER5B DNA MER1_type 82 154 -24 2851 10 0 0 chr6 174911837 174912137 -14367417 - AluYb8 SINE Alu -18 300 1 2449 67 0 0 chr6 174912543 174912828 -14366726 + AluY SINE Alu 1 285 -26 405 0 0 0 chr6 174912828 174912873 -14366681 + (CA)n Simple_repeat Simple_repeat 2 46 0 1015 275 168 10 chr6 174912874 174913362 -14366192 - HAL1 LINE L1 -371 2136 1572 2408 92 13 0 chr6 174913365 174913671 -14365883 - AluSx SINE Alu -1 311 2 1151 171 0 0 chr6 174914124 174914299 -14365255 + FRAM SINE Alu 1 168 -8 223 349 0 0 chr6 174914428 174914494 -14365060 + (TG)n Simple_repeat Simple_repeat 2 67 0 376 250 167 36 chr6 174915173 174915341 -14364213 - L1ME4a LINE L1 -2 6119 5930 682 161 77 0 chr6 174915437 174915580 -14363974 - MER105 DNA DNA -5 199 46 714 183 117 22 chr6 174915581 174915761 -14363793 - MER20 DNA MER1_type -1 218 22 269 180 20 0 chr6 174915767 174915817 -14363737 - MER105 DNA DNA -153 51 1 334 243 60 3 chr6 174915899 174916022 -14363532 - L1ME4a LINE L1 -372 5749 5633 2396 80 10 0 chr6 174916300 174916600 -14362954 - AluY SINE Alu -8 303 1 2229 109 0 3 chr6 174916874 174917167 -14362387 - AluSg SINE Alu -18 292 1 1427 175 0 4 chr6 174917431 174917659 -14361895 - AluJb SINE Alu -7 305 79 2306 92 3 7 chr6 174918345 174918648 -14360906 - AluY SINE Alu -9 302 1 242 122 102 0 chr6 174919704 174919753 -14359801 - L1MB4 LINE L1 -1 6179 6126 2177 86 36 0 chr6 174919788 174920066 -14359488 - AluSp SINE Alu -20 293 6 2567 145 53 36 chr6 174920070 174920370 -14359184 - L1MB3 LINE L1 -40 6143 5850 2324 103 10 0 chr6 174920370 174920680 -14358874 - AluSq SINE Alu 0 313 1 2567 145 53 36 chr6 174920680 174920841 -14358713 - L1MB3 LINE L1 -333 5850 5669 2377 106 0 0 chr6 174920841 174921143 -14358411 - AluSq SINE Alu -11 302 1 2567 145 53 36 chr6 174921143 174921212 -14358342 - L1MB3 LINE L1 -514 5669 5603 10500 156 86 20 chr6 174921213 174921999 -14357555 - L1M4c LINE L1 -3985 2578 1845 2525 87 3 0 chr6 174921999 174922311 -14357243 - AluSp SINE Alu 0 313 1 10500 156 86 20 chr6 174922311 174923037 -14356517 - L1M4c LINE L1 -4718 1845 1168 2590 73 0 0 chr6 174923037 174923339 -14356215 - AluY SINE Alu -9 302 1 10500 156 86 20 chr6 174923339 174924090 -14355464 - L1M4c LINE L1 -5395 1168 17 1857 101 58 16 chr6 174924502 174924759 -14354795 + AluSq SINE Alu 1 268 -45 241 238 62 50 chr6 174924795 174924875 -14354679 + MIR3 SINE MIR 110 190 -18 1876 184 104 0 chr6 174924917 174925329 -14354225 + MLT2B1 LTR ERVL 1 455 -65 268 123 0 35 chr6 174925329 174925386 -14354168 + (CAGA)n Simple_repeat Simple_repeat 1 55 0 275 128 0 0 chr6 174925387 174925434 -14354120 + MLT2B1 LTR ERVL 472 518 -2 238 261 130 0 chr6 174926081 174926150 -14353404 + MIR3 SINE MIR 89 166 -42 222 176 0 0 chr6 174927061 174927112 -14352442 + (CA)n Simple_repeat Simple_repeat 1 51 0 305 220 190 1 chr6 174927472 174927617 -14351937 - MER58B DNA MER1_type -19 322 37 270 287 75 11 chr6 174928219 174928313 -14351241 - MIR3 SINE MIR -28 180 81 1425 120 0 15 chr6 174928522 174928722 -14350832 + AluSc SINE Alu 1 197 -112 2187 79 7 21 chr6 174928730 174929010 -14350544 + AluY SINE Alu 6 283 -28 180 0 0 0 chr6 174929010 174929030 -14350524 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1215 133 0 17 chr6 174929040 174929221 -14350333 + AluSc SINE Alu 132 309 0 498 234 9 0 chr6 174929305 174929416 -14350138 + L1MD3 LINE L1 7793 7904 -91 2409 72 0 29 chr6 174929579 174929886 -14349668 + AluY SINE Alu 1 298 -13 2212 93 13 32 chr6 174930216 174930528 -14349026 + AluSx SINE Alu 1 306 -6 917 175 7 0 chr6 174930991 174931145 -14348409 + FRAM SINE Alu 12 166 -10 409 278 86 12 chr6 174932268 174932430 -14347124 - MIR SINE MIR -58 204 31 206 91 121 43 chr6 174933398 174933633 -14345921 + (CACCT)n Simple_repeat Simple_repeat 1 253 0 486 324 87 16 chr6 174933647 174934027 -14345527 + L2 LINE L2 2050 2456 -858 353 362 37 0 chr6 174935343 174935506 -14344048 + MIR SINE MIR 60 228 -34 2014 114 15 0 chr6 174936042 174936306 -14343248 + AluSx SINE Alu 1 268 -44 301 274 112 41 chr6 174936568 174936676 -14342878 + MIR SINE MIR 2 101 -161 2434 90 0 0 chr6 174936676 174936977 -14342577 + AluSx SINE Alu 1 301 -11 301 274 112 41 chr6 174936977 174937065 -14342489 + MIR SINE MIR 101 212 -50 649 318 87 12 chr6 174937102 174937344 -14342210 + MIR SINE MIR 3 262 0 261 0 0 0 chr6 174937644 174937673 -14341881 + (CA)n Simple_repeat Simple_repeat 2 30 0 220 229 16 0 chr6 174939952 174940013 -14339541 + (CAG)n Simple_repeat Simple_repeat 3 64 0 22 0 0 0 chr6 174940101 174940123 -14339431 + GC_rich Low_complexity Low_complexity 1 22 0 793 267 142 30 chr6 174941367 174941697 -14337857 + MER57B LTR ERV1 12 378 -56 415 154 77 0 chr6 174941671 174941749 -14337805 + LTR54 LTR ERV1 427 510 0 * 405 226 26 26 chr6 174941749 174941864 -14337690 - Charlie8 DNA MER1_type -2300 117 3 277 281 111 30 chr6 174942154 174942289 -14337265 - L2 LINE L2 0 3313 3168 2017 120 11 0 chr6 174942309 174942614 -14336940 + AluSx SINE Alu 5 312 0 1696 147 19 0 chr6 174942741 174943000 -14336554 - AluJb SINE Alu -21 291 28 2776 121 29 34 chr6 174943034 174943080 -14336474 + MER65A LTR ERV1 1 46 -399 1812 131 86 0 chr6 174943080 174943347 -14336207 + AluSx SINE Alu 1 290 -22 2776 121 29 34 chr6 174943347 174943746 -14335808 + MER65A LTR ERV1 46 444 -1 2302 192 90 59 chr6 174943861 174944690 -14334864 + MER65A-int LTR ERV1 115 1021 -3850 5330 164 83 58 chr6 174944728 174945487 -14334067 + MER65A-int LTR ERV1 1105 1844 -3027 1058 179 9 76 chr6 174945487 174945600 -14333954 - MER6B DNA MER2_type -656 209 117 2136 112 3 20 chr6 174945600 174945734 -14333820 + AluSq SINE Alu 1 136 -177 2354 84 0 0 chr6 174945734 174946043 -14333511 + AluSq SINE Alu 1 309 0 2136 112 3 20 chr6 174946043 174946211 -14333343 + AluSq SINE Alu 136 299 -14 1058 179 9 76 chr6 174946211 174946320 -14333234 - MER6B DNA MER2_type -748 117 2 5330 164 83 58 chr6 174946320 174946916 -14332638 + MER65A-int LTR ERV1 1844 2494 -2377 1833 142 14 10 chr6 174946916 174947212 -14332342 - AluJb SINE Alu -15 297 1 1108 142 22 40 chr6 174947417 174947643 -14331911 + MER65A-int LTR ERV1 3511 3732 -2866 1005 218 70 64 chr6 174947727 174948371 -14331183 + MER65A-int LTR ERV1 2557 3023 -1913 * 1341 229 78 69 chr6 174948351 174948860 -14330694 + MER65A-int LTR ERV1 4248 4764 -1567 2201 106 3 7 chr6 174948860 174949153 -14330401 + AluSc SINE Alu 1 292 -17 1341 229 78 69 chr6 174949153 174949210 -14330344 + MER65A-int LTR ERV1 4764 4819 -1512 373 91 36 0 chr6 174949210 174949265 -14330289 - Alu SINE Alu 0 302 246 306 345 0 0 chr6 174949286 174949370 -14330184 + MER65-int LTR ERV1 3654 3737 -1134 1697 171 17 0 chr6 174949510 174949797 -14329757 + AluJb SINE Alu 1 292 -20 907 81 16 8 chr6 174949853 174949977 -14329577 + AluSp SINE Alu 1 125 -188 775 163 0 15 chr6 174950073 174950208 -14329346 - FLAM_C SINE Alu 0 133 1 2066 125 7 10 chr6 174950444 174950741 -14328813 - AluSx SINE Alu -16 296 1 2337 78 10 3 chr6 174951747 174952043 -14327511 + AluSq SINE Alu 1 298 -15 229 193 24 84 chr6 174953250 174953333 -14326221 + L1MC5 LINE L1 7840 7917 -44 21 36 0 0 chr6 174953988 174954016 -14325538 + AT_rich Low_complexity Low_complexity 1 28 0 1848 97 23 4 chr6 174954338 174954597 -14324957 - AluSc SINE Alu -3 306 43 2713 7 0 0 chr6 174954634 174954933 -14324621 + L1PA2 LINE L1 5853 6151 -4 552 68 0 0 chr6 174956032 174956105 -14323449 + (TA)n Simple_repeat Simple_repeat 2 74 0 1874 152 33 0 chr6 174956307 174956609 -14322945 + AluJb SINE Alu 1 312 0 308 278 204 37 chr6 174957382 174957544 -14322010 + MER5A DNA MER1_type 1 189 0 1009 180 69 0 chr6 174957794 174957983 -14321571 + MER2 DNA MER2_type 5 206 -139 290 346 20 20 chr6 174958152 174958305 -14321249 - MIR SINE MIR -83 179 27 2192 115 0 16 chr6 174958316 174958630 -14320924 - AluSq SINE Alu -4 309 1 594 133 20 10 chr6 174958976 174959074 -14320480 - AluY SINE Alu -25 286 188 231 248 37 37 chr6 174959174 174959283 -14320271 + L2 LINE L2 1882 1990 -1324 267 316 64 11 chr6 174959770 174959957 -14319597 + L2 LINE L2 2862 3058 -255 1241 175 66 39 chr6 174960068 174960247 -14319307 - AluJb SINE Alu -8 304 114 216 0 0 0 chr6 174960247 174960271 -14319283 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1241 175 66 39 chr6 174960271 174960348 -14319206 - AluJb SINE Alu -198 114 41 1461 178 0 37 chr6 174960355 174960624 -14318930 - AluJb SINE Alu -13 299 41 385 278 0 0 chr6 174960647 174960737 -14318817 + L2 LINE L2 3224 3313 0 2350 101 3 13 chr6 174961356 174961672 -14317882 + AluSp SINE Alu 1 313 0 243 0 0 0 chr6 174961761 174961788 -14317766 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2118 115 7 0 chr6 174961893 174962179 -14317375 - AluSq SINE Alu -25 288 1 2001 173 57 48 chr6 174962433 174962891 -14316663 - LTR8A LTR ERV1 0 727 266 21 36 0 0 chr6 174962891 174962919 -14316635 + AT_rich Low_complexity Low_complexity 1 28 0 1525 108 75 65 chr6 174963958 174964151 -14315403 - LTR8A LTR ERV1 -446 281 83 2390 70 0 26 chr6 174964151 174964453 -14315101 + AluY SINE Alu 5 298 -13 1525 108 75 65 chr6 174964453 174964537 -14315017 - LTR8A LTR ERV1 -644 83 1 579 293 80 29 chr6 174964583 174964894 -14314660 + L2 LINE L2 2914 3240 -73 231 88 0 0 chr6 174964916 174964950 -14314604 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 2278 126 0 0 chr6 174965147 174965457 -14314097 + AluJb SINE Alu 1 310 -2 1616 146 26 62 chr6 174966829 174967137 -14312417 - AluJb SINE Alu -15 297 1 266 328 161 20 chr6 174967218 174967270 -14312284 - L2 LINE L2 -4 3309 3266 279 0 0 0 chr6 174967270 174967301 -14312253 + (TA)n Simple_repeat Simple_repeat 2 32 0 2285 73 0 0 chr6 174967302 174967577 -14311977 - AluSc SINE Alu -17 292 18 266 328 161 20 chr6 174967577 174967863 -14311691 - L2 LINE L2 -46 3267 2921 1208 198 147 81 chr6 174968390 174968494 -14311060 - MLT1C LTR MaLR 0 467 371 753 155 0 0 chr6 174968494 174968610 -14310944 + FLAM_C SINE Alu 2 117 -16 1208 198 147 81 chr6 174968610 174968940 -14310614 - MLT1C LTR MaLR -96 371 4 2380 102 3 0 chr6 174969114 174969419 -14310135 - AluSx SINE Alu -6 306 1 1941 167 36 33 chr6 174969470 174969859 -14309695 + MLT1B LTR MaLR 1 390 0 2271 87 0 3 chr6 174969956 174970243 -14309311 - AluSg SINE Alu -24 286 1 424 301 51 17 chr6 174970258 174970434 -14309120 - MIR SINE MIR 0 262 81 2474 60 0 13 chr6 174970710 174971010 -14308544 + AluY SINE Alu 1 296 -15 186 315 37 74 chr6 174972801 174972909 -14306645 + L2 LINE L2 3169 3272 0 1965 120 3 33 chr6 174972959 174973288 -14306266 - AluSx SINE Alu 0 320 1 229 225 45 56 chr6 174974319 174974408 -14305146 - LTR50 LTR ERVL -113 682 595 235 226 119 0 chr6 174974431 174974515 -14305039 - LTR50 LTR ERVL -592 203 110 314 291 51 8 chr6 174974517 174974634 -14304920 - L1MCc LINE L1 -6283 140 19 1634 204 44 7 chr6 174974697 174975117 -14304437 - MLT1F LTR MaLR -1 541 19 195 376 17 17 chr6 174975134 174975315 -14304239 + L2 LINE L2 2394 2574 -740 801 257 98 63 chr6 174975407 174976006 -14303548 - L1ME4a LINE L1 -5 6116 5498 925 122 0 0 chr6 174976066 174976189 -14303365 + FLAM_C SINE Alu 2 124 -9 230 286 79 16 chr6 174976209 174976335 -14303219 - L1ME4a LINE L1 -40 6081 5948 324 205 26 0 chr6 174976408 174976486 -14303068 - MER116 DNA Mariner 0 80 1 473 314 20 10 chr6 174976493 174976697 -14302857 - L1ME4a LINE L1 -195 5926 5721 2143 134 0 0 chr6 174977236 174977528 -14302026 - AluSx SINE Alu -10 302 11 31 26 0 0 chr6 174978253 174978291 -14301263 + AT_rich Low_complexity Low_complexity 1 38 0 185 378 54 0 chr6 174978530 174978641 -14300913 - MER5A DNA MER1_type -2 187 71 2096 131 7 0 chr6 174978649 174978946 -14300608 + AluSx SINE Alu 1 299 -13 1361 97 6 0 chr6 174979561 174979737 -14299817 - AluSx SINE Alu -133 179 3 2311 80 36 0 chr6 174980077 174980379 -14299175 + AluSq SINE Alu 1 313 0 217 200 180 0 chr6 174980388 174980438 -14299116 + L2 LINE L2 3255 3313 0 1782 153 42 0 chr6 174980869 174981157 -14298397 + AluJb SINE Alu 1 300 -12 25 0 0 0 chr6 174981634 174981659 -14297895 + AT_rich Low_complexity Low_complexity 1 25 0 1843 168 146 7 chr6 174981713 174982124 -14297430 + Charlie4a DNA MER1_type 41 508 0 2338 101 7 0 chr6 174984348 174984656 -14294898 + AluSx SINE Alu 3 312 0 281 258 72 72 chr6 174985202 174985369 -14294185 - MIR SINE MIR -43 219 53 1695 167 62 4 chr6 174985911 174986187 -14293367 + AluJo SINE Alu 1 292 -20 330 315 74 13 chr6 174988104 174988256 -14291298 - MIR SINE MIR -62 146 18 2247 95 3 0 chr6 174988310 174988616 -14290938 - AluSq SINE Alu 0 307 1 643 186 8 39 chr6 174989910 174990039 -14289515 + FLAM_A SINE Alu 4 128 -5 1899 121 24 3 chr6 174990587 174990884 -14288670 + AluSx SINE Alu 1 303 -9 2315 61 0 7 chr6 174990895 174991191 -14288363 - AluY SINE Alu -17 294 1 1680 89 124 12 chr6 174991579 174991837 -14287717 + AluSx SINE Alu 10 296 -16 399 314 47 57 chr6 174991937 174992111 -14287443 - HAL1b LINE L1 -577 771 597 1935 102 11 4 chr6 174992111 174992385 -14287169 + AluSx SINE Alu 16 291 -21 399 314 47 57 chr6 174992385 174992596 -14286958 - HAL1b LINE L1 -751 597 390 1854 132 0 16 chr6 174992706 174993017 -14286537 - AluSx SINE Alu -1 311 6 1578 190 14 0 chr6 174993029 174993313 -14286241 - AluJo SINE Alu -22 290 3 2203 60 0 14 chr6 174993528 174993811 -14285743 - AluY SINE Alu -13 298 20 1430 107 141 12 chr6 174994334 174994576 -14284978 + AluSx SINE Alu 16 288 -24 529 252 96 0 chr6 174994584 174994719 -14284835 - AluJb SINE Alu -31 281 134 1848 139 10 3 chr6 174994890 174995185 -14284369 - AluSx SINE Alu -15 297 1 368 241 98 15 chr6 174996373 174996506 -14283048 + MER5A DNA MER1_type 38 181 -8 1926 130 10 7 chr6 174996780 174997081 -14282473 + AluSx SINE Alu 6 307 -5 542 295 45 50 chr6 174997378 174997775 -14281779 + L1MC3 LINE L1 5658 6052 -1733 * 2069 210 32 11 chr6 174997429 174997891 -14281663 + L1MB7 LINE L1 5710 6181 -3 339 278 111 6 chr6 174999706 174999868 -14279686 - MIR3 SINE MIR -8 200 22 225 364 84 13 chr6 174999983 175000137 -14279417 + L2 LINE L2 3107 3271 -1 644 155 16 39 chr6 175000271 175000400 -14279154 - FLAM_C SINE Alu -5 138 13 1981 126 0 3 chr6 175000423 175000735 -14278819 - AluSx SINE Alu 0 311 1 336 103 0 0 chr6 175001368 175001426 -14278128 + (TGG)n Simple_repeat Simple_repeat 1 58 0 1788 118 4 18 chr6 175001429 175001709 -14277845 - AluSx SINE Alu -36 276 1 296 255 68 83 chr6 175001920 175002112 -14277442 + MER20B DNA MER1_type 3 191 -592 491 147 0 0 chr6 175002448 175002523 -14277031 - AluJ/FRAM SINE Alu -17 295 221 755 142 8 24 chr6 175002537 175002664 -14276890 - FLAM_C SINE Alu -17 126 2 2072 84 28 0 chr6 175002875 175003162 -14276392 - AluY SINE Alu -16 295 1 1549 111 13 0 chr6 175003261 175003486 -14276068 + AluSg/x SINE Alu 70 297 -15 2396 70 0 0 chr6 175003696 175003997 -14275557 + AluY SINE Alu 1 301 -10 1425 135 23 0 chr6 175004533 175004793 -14274761 - AluSp SINE Alu -47 266 1 1772 142 17 10 chr6 175004831 175005133 -14274421 + AluJb SINE Alu 1 304 -8 421 252 73 49 chr6 175005333 175005456 -14274098 + L2 LINE L2 3143 3268 -4 23 33 0 0 chr6 175005563 175005593 -14273961 + AT_rich Low_complexity Low_complexity 1 30 0 2358 71 0 0 chr6 175005597 175005891 -14273663 + AluSg SINE Alu 5 298 -12 499 254 43 77 chr6 175006395 175006513 -14273041 - Charlie8 DNA MER1_type -110 231 121 1553 203 3 10 chr6 175006513 175006808 -14272746 - AluJo SINE Alu -15 297 5 499 254 43 77 chr6 175006808 175006898 -14272656 - Charlie8 DNA MER1_type -220 121 30 2030 101 24 0 chr6 175006968 175007255 -14272299 - AluSx SINE Alu -18 294 1 1928 112 0 11 chr6 175009340 175009670 -14269884 - AluSx SINE Alu 0 327 1 417 243 0 68 chr6 175009817 175009884 -14269670 - L1M4 LINE L1 -1187 4959 4889 1932 122 41 0 chr6 175009884 175010178 -14269376 - AluSx SINE Alu -6 306 1 417 243 0 68 chr6 175010178 175010287 -14269267 - L1M4 LINE L1 -1257 4889 4795 2136 117 0 7 chr6 175010514 175010821 -14268733 - AluSx SINE Alu -7 305 1 808 126 0 8 chr6 175010909 175011028 -14268526 + FLAM_C SINE Alu 1 118 -25 210 333 67 0 chr6 175011901 175012006 -14267548 - MIR SINE MIR -91 171 60 2119 104 10 0 chr6 175012735 175013034 -14266520 + AluSx SINE Alu 1 302 -10 1667 196 152 7 chr6 175013501 175013909 -14265645 - MLT1C LTR MaLR 0 467 1 211 276 79 0 chr6 175014015 175014091 -14265463 + MIR SINE MIR 60 141 -121 210 178 67 11 chr6 175014164 175014254 -14265300 + (TAA)n Simple_repeat Simple_repeat 1 95 0 258 116 0 0 chr6 175014584 175014627 -14264927 + (TG)n Simple_repeat Simple_repeat 2 44 0 221 317 67 10 chr6 175014776 175014880 -14264674 + MIR3 SINE MIR 6 115 -93 291 28 0 0 chr6 175015309 175015345 -14264209 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1783 151 0 11 chr6 175015352 175015636 -14263918 - AluSx SINE Alu -30 282 2 518 87 14 0 chr6 175015899 175015968 -14263586 + Alu SINE Alu 2 71 -240 1311 220 45 56 chr6 175016225 175016562 -14262992 - MLT1A1 LTR MaLR 0 365 33 277 192 0 19 chr6 175016562 175016614 -14262940 + MER50 LTR ERV1 501 551 -183 2342 91 0 0 chr6 175016617 175016926 -14262628 - AluY SINE Alu -2 309 1 4192 112 23 5 chr6 175016926 175017536 -14262018 + LTR10E LTR ERV1 13 633 0 1082 190 36 16 chr6 175017561 175017814 -14261740 + LTR10E-int LTR ERV1 32 289 -6360 2302 86 0 0 chr6 175018063 175018366 -14261188 + AluY SINE Alu 1 303 -8 3003 251 9 13 chr6 175018366 175018652 -14260902 + Harlequin LTR ERV1 2699 2985 -3664 2260 93 0 0 chr6 175018652 175018953 -14260601 - AluY SINE Alu -10 301 1 3003 251 9 13 chr6 175018953 175019948 -14259606 + Harlequin LTR ERV1 2985 5890 -759 300 218 0 91 chr6 175019944 175020054 -14259500 + Harlequin LTR ERV1 6550 6649 0 * 3848 112 35 36 chr6 175020054 175020384 -14259170 + LTR10E LTR ERV1 1 330 -303 2174 96 0 3 chr6 175020384 175020687 -14258867 - AluY SINE Alu -9 302 1 3848 112 35 36 chr6 175020687 175020876 -14258678 + LTR10E LTR ERV1 330 521 -112 2442 46 10 3 chr6 175020876 175021180 -14258374 + AluY SINE Alu 1 306 -5 3848 112 35 36 chr6 175021180 175021293 -14258261 + LTR10E LTR ERV1 521 633 0 217 275 213 31 chr6 175021486 175021873 -14257681 + L2 LINE L2 2804 3269 -3 443 246 164 52 chr6 175021883 175022115 -14257439 - MIR SINE MIR 0 262 5 533 309 58 47 chr6 175022759 175023102 -14256452 + L1ME3A LINE L1 5374 5720 -401 2193 82 3 3 chr6 175023131 175023425 -14256129 + AluY SINE Alu 1 294 -17 305 275 33 22 chr6 175023431 175023522 -14256032 + L1ME3A LINE L1 5860 5951 -219 2186 117 3 0 chr6 175023567 175023876 -14255678 + AluSq SINE Alu 1 310 -3 782 236 71 13 chr6 175024195 175024420 -14255134 - MIR SINE MIR -24 238 1 279 316 25 101 chr6 175024904 175025062 -14254492 + MIR3 SINE MIR 3 148 -60 306 315 168 38 chr6 175025253 175025716 -14253838 + L2 LINE L2 1237 1777 -1537 2032 139 0 0 chr6 175025716 175026018 -14253536 - AluSx SINE Alu -10 302 1 306 315 168 38 chr6 175026018 175026078 -14253476 + L2 LINE L2 1777 1828 -1486 380 307 77 13 chr6 175026313 175026660 -14252894 - L1MEd LINE L1 -4851 1459 1046 509 189 0 11 chr6 175026666 175026756 -14252798 - AluJo SINE Alu -23 289 201 602 170 0 0 chr6 175026769 175026863 -14252691 - AluJo SINE Alu -206 106 13 248 293 46 59 chr6 175026872 175027055 -14252499 - L1MEc LINE L1 -4666 1899 1715 2046 130 3 0 chr6 175027055 175027356 -14252198 - AluSx SINE Alu -10 302 1 248 293 46 59 chr6 175027356 175027571 -14251983 - L1MEc LINE L1 -4850 1715 1107 477 304 9 0 chr6 175027607 175027719 -14251835 - MER81 DNA DNA 0 114 2 8682 114 26 9 chr6 175027802 175028124 -14251430 - HSMAR1 DNA Mariner 0 1287 972 2160 105 3 7 chr6 175028124 175028429 -14251125 - AluSx SINE Alu -8 304 1 8682 114 26 9 chr6 175028429 175029364 -14250190 - HSMAR1 DNA Mariner -315 972 9 2029 107 3 41 chr6 175029628 175029947 -14249607 - AluY SINE Alu -4 307 1 986 98 0 0 chr6 175030673 175030806 -14248748 - AluSq/x SINE Alu -180 133 1 2064 121 7 0 chr6 175030971 175031277 -14248277 - AluSx SINE Alu -4 308 1 2137 87 0 40 chr6 175031355 175031678 -14247876 - AluY SINE Alu 0 311 2 283 256 204 12 chr6 175032014 175032149 -14247405 - MIR SINE MIR -53 209 31 494 309 64 0 chr6 175032748 175032952 -14246602 + L1 LINE L1 4630 4846 -1300 2095 158 11 22 chr6 175032973 175033333 -14246221 - MLT1A1 LTR MaLR 0 365 10 257 254 91 36 chr6 175033352 175033462 -14246092 + L1 LINE L1 4882 4997 -1149 22 0 0 0 chr6 175033498 175033520 -14246034 + AT_rich Low_complexity Low_complexity 1 22 0 2208 85 0 0 chr6 175033520 175033824 -14245730 - AluSg SINE Alu 0 304 1 700 181 0 0 chr6 175033896 175034001 -14245553 - FLAM_C SINE Alu -25 118 14 238 212 0 47 chr6 175034008 175034044 -14245510 - L1M LINE L1 -907 5398 5362 2199 106 0 0 chr6 175034044 175034347 -14245207 - AluSx SINE Alu -9 303 1 238 212 0 47 chr6 175034347 175034395 -14245159 - L1M LINE L1 -943 5362 5318 29 0 0 0 chr6 175034396 175034425 -14245129 + AT_rich Low_complexity Low_complexity 1 29 0 823 132 0 62 chr6 175034425 175034569 -14244985 - AluJo/FRAM SINE Alu -21 291 157 930 134 69 152 chr6 175034571 175034847 -14244707 - AluJo SINE Alu -59 253 1 225 240 88 85 chr6 175034848 175035223 -14244331 - L1M4 LINE L1 -820 5326 4951 261 200 300 0 chr6 175035523 175035623 -14243931 + L1M4 LINE L1 2958 3087 -3059 2163 105 0 0 chr6 175035623 175035919 -14243635 + AluSq SINE Alu 1 296 -17 1963 118 3 13 chr6 175036000 175036304 -14243250 + AluSx SINE Alu 1 301 -11 1022 147 28 17 chr6 175036304 175036481 -14243073 + AluJo/FRAM SINE Alu 134 312 0 595 177 0 151 chr6 175036486 175036568 -14242986 + L1M4 LINE L1 3337 3377 -2769 1391 150 129 32 chr6 175036568 175036848 -14242706 - AluJo SINE Alu -5 307 1 595 177 0 151 chr6 175036848 175036951 -14242603 + L1M4 LINE L1 3377 3494 -2652 * 889 232 135 86 chr6 175036950 175037484 -14242070 + L1ME3A LINE L1 5579 6138 -32 1134 209 8 8 chr6 175037573 175037826 -14241728 - AluJo SINE Alu -6 306 54 2144 109 3 0 chr6 175037854 175038156 -14241398 - AluSq SINE Alu -10 303 1 203 286 71 31 chr6 175039967 175040065 -14239489 - MIR SINE MIR -80 182 81 2280 112 3 6 chr6 175040130 175040442 -14239112 - AluSq SINE Alu -2 311 1 2709 37 0 0 chr6 175040509 175040807 -14238747 + AluY SINE Alu 1 298 -13 553 211 60 12 chr6 175040814 175040980 -14238574 - Charlie2a DNA MER1_type -1943 919 746 399 248 306 20 chr6 175040985 175041332 -14238222 - Charlie2a DNA MER1_type -2416 446 1 2580 72 0 0 chr6 175041499 175041805 -14237749 + AluY SINE Alu 1 306 -5 1807 165 0 10 chr6 175042121 175042412 -14237142 + AluJo SINE Alu 1 288 -24 242 305 85 49 chr6 175042984 175043148 -14236406 + MIR SINE MIR 93 262 0 22 0 0 0 chr6 175043464 175043486 -14236068 + AT_rich Low_complexity Low_complexity 1 22 0 2202 101 3 7 chr6 175043493 175043780 -14235774 + AluSx SINE Alu 6 291 -21 261 0 0 0 chr6 175043780 175043809 -14235745 + (T)n Simple_repeat Simple_repeat 1 29 0 2324 103 3 0 chr6 175045221 175045513 -14234041 + AluSc SINE Alu 3 295 -14 1187 92 116 5 chr6 175046550 175046585 -14232969 - MER30 DNA MER1_type 0 230 200 2176 112 13 7 chr6 175046585 175046890 -14232664 - AluSx SINE Alu -5 307 1 1187 92 116 5 chr6 175046890 175047061 -14232493 - MER30 DNA MER1_type -30 200 1 2493 71 0 19 chr6 175048357 175048667 -14230887 - AluY SINE Alu -7 304 1 2154 132 0 0 chr6 175049694 175049983 -14229571 + AluSx SINE Alu 1 289 -23 1422 172 56 11 chr6 175051969 175052237 -14227317 + AluJo SINE Alu 5 284 -28 2221 104 7 0 chr6 175052275 175052562 -14226992 - AluSc SINE Alu -20 289 1 201 39 0 0 chr6 175053358 175053384 -14226170 + (A)n Simple_repeat Simple_repeat 1 26 0 1443 168 58 41 chr6 175055107 175055471 -14224083 + THE1C LTR MaLR 6 375 0 375 261 99 0 chr6 175055804 175055915 -14223639 - MIR SINE MIR -78 184 63 252 316 116 7 chr6 175057490 175057645 -14221909 + MIR SINE MIR 63 234 -28 373 300 132 12 chr6 175061349 175061599 -14217955 + L2 LINE L2 3022 3301 -12 405 39 0 0 chr6 175061732 175061783 -14217771 + (CA)n Simple_repeat Simple_repeat 2 52 0 2321 88 7 3 chr6 175062094 175062391 -14217163 - AluSg SINE Alu -12 298 1 3069 225 150 11 chr6 175065673 175066625 -14212929 + L1MC4a LINE L1 6711 7795 -13 1871 141 0 44 chr6 175066639 175066936 -14212618 - AluJb SINE Alu -28 284 1 660 176 16 0 chr6 175067070 175067195 -14212359 - LTR8A LTR ERV1 -357 370 244 2201 128 3 0 chr6 175067397 175067694 -14211860 + AluSx SINE Alu 1 298 -14 265 149 60 0 chr6 175067781 175067848 -14211706 + L1ME2 LINE L1 6084 6154 -10 1769 161 18 0 chr6 175069269 175069554 -14210000 - AluJb SINE Alu -22 290 1 1908 140 12 43 chr6 175073259 175073581 -14205973 + AluJo SINE Alu 1 312 0 2352 104 0 7 chr6 175073587 175073896 -14205658 + AluSg SINE Alu 1 307 -3 2227 135 0 0 chr6 175075860 175076163 -14203391 + AluSx SINE Alu 1 303 -9 1704 171 20 20 chr6 175077117 175077415 -14202139 - AluJo SINE Alu -14 298 1 2241 116 3 7 chr6 175077887 175078190 -14201364 + AluSx SINE Alu 2 303 -9 241 280 93 0 chr6 175079067 175079142 -14200412 - MIR SINE MIR -115 147 66 1737 159 10 55 chr6 175079749 175080058 -14199496 + AluJo SINE Alu 1 295 -17 189 308 126 49 chr6 175080536 175080679 -14198875 + MER5A DNA MER1_type 36 189 0 674 278 193 40 chr6 175080865 175081597 -14197957 + L2 LINE L2 2330 3188 -84 2368 87 3 0 chr6 175082716 175083004 -14196550 - AluSc SINE Alu -13 296 8 1465 143 61 55 chr6 175083651 175083944 -14195610 - AluJo SINE Alu -17 295 1 1638 159 73 3 chr6 175084173 175084513 -14195041 + L1MB3 LINE L1 5820 6183 0 2199 98 4 0 chr6 175084974 175085251 -14194303 + AluSx SINE Alu 1 278 -34 36 62 0 0 chr6 175086499 175086563 -14192991 + GC_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr6 175087406 175087427 -14192127 + GC_rich Low_complexity Low_complexity 1 21 0 633 237 46 0 chr6 175088108 175088281 -14191273 + MER5A DNA MER1_type 2 182 -7 555 256 30 0 chr6 175088321 175088454 -14191100 + MIR SINE MIR 108 244 -18 357 250 125 15 chr6 175088481 175088617 -14190937 + MIR SINE MIR 86 236 -26 681 235 30 0 chr6 175289068 175289234 -13990320 - MIR SINE MIR 0 262 92 2253 84 0 53 chr6 175289383 175289703 -13989851 + AluY SINE Alu 1 303 -8 2983 114 15 13 chr6 175289947 175290402 -13989152 - L1PA16 LINE L1 0 6166 5711 2003 125 11 0 chr6 175290424 175290705 -13988849 + AluSx SINE Alu 23 306 -6 207 0 0 0 chr6 175290705 175290728 -13988826 + (GA)n Simple_repeat Simple_repeat 1 23 0 488 121 0 12 chr6 175290728 175290811 -13988743 + (GAAAA)n Simple_repeat Simple_repeat 3 84 0 1862 137 9 44 chr6 175290815 175291136 -13988418 + AluSx SINE Alu 1 310 -2 240 163 294 22 chr6 175291137 175291229 -13988325 - HAL1 LINE L1 -72 2435 2319 561 264 108 17 chr6 175291232 175291463 -13988091 - MLT1J LTR MaLR -3 508 257 1321 296 140 37 chr6 175291621 175292490 -13987064 - HAL1 LINE L1 -1548 959 1 2208 111 3 0 chr6 175292844 175293133 -13986421 + AluSg SINE Alu 1 290 -20 2155 102 53 0 chr6 175294028 175294311 -13985243 + AluSx SINE Alu 3 300 -12 21 0 0 0 chr6 175294997 175295018 -13984536 + AT_rich Low_complexity Low_complexity 1 21 0 213 231 0 0 chr6 175295084 175295123 -13984431 + A-rich Low_complexity Low_complexity 2 40 0 1811 138 22 56 chr6 175295169 175295488 -13984066 + AluJb SINE Alu 1 308 -4 1077 117 94 0 chr6 175295654 175295825 -13983729 + AluSx SINE Alu 1 187 -125 923 208 23 23 chr6 175297189 175297405 -13982149 - MIR SINE MIR -28 234 19 1783 181 0 7 chr6 175299034 175299332 -13980222 - AluJb SINE Alu -16 296 1 372 312 89 0 chr6 175299390 175299547 -13980007 + MER5B DNA MER1_type 4 174 -4 2111 85 7 18 chr6 175299872 175300211 -13979343 + AluSc SINE Alu 1 336 0 232 253 143 65 chr6 175300808 175300962 -13978592 - HAL1 LINE L1 -8 2499 2334 397 213 222 43 chr6 175301075 175301305 -13978249 - HAL1 LINE L1 -385 2122 1852 206 194 125 0 chr6 175301306 175301378 -13978176 - MIR SINE MIR -58 204 124 1712 169 3 42 chr6 175302478 175302791 -13976763 + AluJb SINE Alu 1 301 -11 3945 196 84 117 chr6 175303536 175303858 -13975696 - Charlie1a DNA MER1_type -1321 1440 1109 2406 95 0 0 chr6 175303858 175304163 -13975391 + AluSx SINE Alu 1 305 -7 3945 196 84 117 chr6 175304163 175304663 -13974891 - Charlie1a DNA MER1_type -1652 1109 594 477 191 79 48 chr6 175304663 175304789 -13974765 - FLAM_C SINE Alu -12 131 2 3945 196 84 117 chr6 175304789 175304879 -13974675 - Charlie1a DNA MER1_type -2167 594 503 2341 102 0 3 chr6 175304879 175305183 -13974371 + AluSq SINE Alu 1 303 -10 3945 196 84 117 chr6 175305183 175305631 -13973923 - Charlie1a DNA MER1_type -2258 503 2 2084 95 57 11 chr6 175307668 175307951 -13971603 + AluSx SINE Alu 1 296 -16 205 307 57 23 chr6 175308222 175308310 -13971244 - L2 LINE L2 -26 3287 3197 2144 113 0 7 chr6 175309189 175309473 -13970081 + AluSx SINE Alu 1 282 -30 438 220 100 0 chr6 175309664 175309764 -13969790 + FLAM_A SINE Alu 1 110 -32 564 263 0 36 chr6 175309803 175309940 -13969614 + MER58A DNA MER1_type 31 162 0 1526 114 0 0 chr6 175309966 175310176 -13969378 + AluSg/x SINE Alu 81 290 -20 1636 195 7 3 chr6 175310326 175310624 -13968930 + AluJo SINE Alu 1 299 -13 1868 152 17 0 chr6 175312606 175312896 -13966658 - AluSx SINE Alu -14 298 4 183 290 0 32 chr6 175313521 175313583 -13965971 - MIR SINE MIR -3 259 200 417 286 152 17 chr6 175314255 175314486 -13965068 + MIR SINE MIR 1 262 0 407 266 69 116 chr6 175315136 175315275 -13964279 + L1M4 LINE L1 4978 5122 -1024 1613 199 21 0 chr6 175315275 175315566 -13963988 - AluJo SINE Alu -15 297 1 407 266 69 116 chr6 175315566 175315577 -13963977 + L1M4 LINE L1 5122 5132 -1014 1777 169 7 3 chr6 175315577 175315873 -13963681 - AluJb SINE Alu -15 297 1 407 266 69 116 chr6 175315873 175315988 -13963566 + L1M4 LINE L1 5132 5251 -895 1898 159 7 3 chr6 175315988 175316289 -13963265 + AluJb SINE Alu 1 302 -10 407 266 69 116 chr6 175316289 175316376 -13963178 + L1M4 LINE L1 5251 5309 -837 8259 53 10 0 chr6 175316376 175317335 -13962219 + LTR5 LTR ERVK 1 969 0 407 266 69 116 chr6 175317335 175317426 -13962128 + L1M4 LINE L1 5309 5403 -743 650 261 115 0 chr6 175317573 175317799 -13961755 - MIR SINE MIR -1 261 10 2548 47 0 10 chr6 175318147 175318444 -13961110 - AluY SINE Alu -17 294 1 1108 209 134 23 chr6 175318465 175318772 -13960782 - MER58B DNA MER1_type 0 341 1 1547 177 6 78 chr6 175318945 175319267 -13960287 + AluJb SINE Alu 1 299 -13 951 188 0 6 chr6 175319267 175319437 -13960117 + AluJb SINE Alu 134 302 -10 192 350 103 21 chr6 175319609 175319706 -13959848 + L2 LINE L2 3168 3272 0 456 266 124 44 chr6 175319838 175320064 -13959490 + MIR SINE MIR 5 248 -14 336 301 105 49 chr6 175320099 175320172 -13959382 + L2 LINE L2 2621 2688 -625 1929 103 64 14 chr6 175320172 175320453 -13959101 - AluSx SINE Alu -17 295 1 336 301 105 49 chr6 175320453 175320807 -13958747 + L2 LINE L2 2688 3100 -213 22 35 0 0 chr6 175322408 175322437 -13957117 + GC_rich Low_complexity Low_complexity 1 29 0 309 174 130 0 chr6 175323536 175323605 -13955949 - AluJo SINE Alu -12 290 213 782 179 32 6 chr6 175323607 175323763 -13955791 - AluJo SINE Alu -151 161 2 1365 182 33 36 chr6 175324805 175325107 -13954447 - AluJo SINE Alu -1 301 1 617 226 116 32 chr6 175325712 175325902 -13953652 - MER6B DNA MER2_type 0 210 5 639 205 0 0 chr6 175326743 175326855 -13952699 + FLAM_A SINE Alu 4 115 -18 2309 102 0 3 chr6 175327468 175327771 -13951783 + AluSg SINE Alu 1 302 -8 934 172 25 6 chr6 175328529 175328692 -13950862 + FRAM SINE Alu 1 166 0 197 197 182 0 chr6 175329144 175329210 -13950344 + L2 LINE L2 1931 2008 -1306 366 307 181 8 chr6 175329331 175329585 -13949969 + L2 LINE L2 2262 2559 -755 2311 92 7 3 chr6 175330276 175330581 -13948973 - AluSq SINE Alu -7 306 1 225 0 0 0 chr6 175333622 175333647 -13945907 + (T)n Simple_repeat Simple_repeat 1 25 0 1418 180 72 4 chr6 175334226 175334504 -13945050 + AluJo SINE Alu 1 297 -15 2190 108 7 0 chr6 175334986 175335281 -13944273 + AluSx SINE Alu 1 297 -15 843 186 0 19 chr6 175335551 175335707 -13943847 + FRAM SINE Alu 1 152 -24 2818 191 120 126 chr6 175337150 175337332 -13942222 - L1MC4 LINE L1 -68 7974 7793 1819 124 55 24 chr6 175337332 175337622 -13941932 + AluJo SINE Alu 1 299 -13 2818 191 120 126 chr6 175337622 175338896 -13940658 - L1MC4 LINE L1 -249 7793 6526 362 240 0 0 chr6 175338896 175338971 -13940583 + AluSg/x SINE Alu 111 185 -115 878 183 0 44 chr6 175339143 175339323 -13940231 - FAM SINE Alu 0 175 4 1362 244 82 0 chr6 175339328 175339705 -13939849 - L1M4 LINE L1 -1082 5064 4657 189 65 0 32 chr6 175339712 175339743 -13939811 + (TTTA)n Simple_repeat Simple_repeat 1 180 0 2045 116 0 11 chr6 175339743 175340027 -13939527 - AluY SINE Alu -30 281 1 198 0 0 0 chr6 175340040 175340062 -13939492 + (TTG)n Simple_repeat Simple_repeat 3 24 0 711 191 12 111 chr6 175340063 175340225 -13939329 - FAM SINE Alu -39 146 1 231 218 154 0 chr6 175340225 175340303 -13939251 - L1MDa LINE L1 -4538 2002 1913 519 94 0 0 chr6 175340306 175340370 -13939184 - Alu SINE Alu -16 296 233 1087 282 86 79 chr6 175340478 175340577 -13938977 - L1MDa LINE L1 -5114 1607 1510 2311 92 7 0 chr6 175340577 175340870 -13938684 - AluSp SINE Alu -18 295 1 252 0 0 0 chr6 175340875 175340903 -13938651 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 2055 134 3 0 chr6 175340903 175341187 -13938367 - AluSx SINE Alu -27 285 1 1087 282 86 79 chr6 175341187 175341307 -13938247 - L1MDa LINE L1 -5214 1507 1389 927 158 0 0 chr6 175341307 175341440 -13938114 - FLAM_C SINE Alu 0 133 1 1087 282 86 79 chr6 175341440 175342440 -13937114 - L1MDa LINE L1 -5332 1389 371 315 91 0 0 chr6 175342463 175342507 -13937047 - MLT1B LTR MaLR -51 339 296 204 295 33 0 chr6 175342816 175342877 -13936677 + MIR SINE MIR 80 142 -120 384 272 136 6 chr6 175343003 175343165 -13936389 + MIR3 SINE MIR 16 198 -10 300 188 43 29 chr6 175343996 175344065 -13935489 + MIR SINE MIR 111 180 -82 2316 86 3 0 chr6 175345273 175345563 -13933991 + AluSp SINE Alu 5 295 -18 2100 110 7 29 chr6 175346234 175346544 -13933010 + AluSx SINE Alu 1 303 -9 2306 112 0 0 chr6 175346554 175346857 -13932697 + AluSx SINE Alu 1 303 -9 504 236 9 9 chr6 175346902 175347012 -13932542 + L2 LINE L2 3201 3310 -3 502 256 89 11 chr6 175347031 175347207 -13932347 + MIR SINE MIR 36 224 -38 360 217 0 0 chr6 175347250 175347310 -13932244 + FAM SINE Alu 67 126 -49 1033 155 20 45 chr6 175347312 175347512 -13932042 + AluJo SINE Alu 88 282 -30 36 0 0 0 chr6 175347512 175347548 -13932006 + AT_rich Low_complexity Low_complexity 1 36 0 432 250 27 18 chr6 175347673 175347785 -13931769 + L2 LINE L2 3158 3270 -2 1366 192 59 14 chr6 175347849 175348135 -13931419 - AluJo SINE Alu -13 299 1 2174 103 0 3 chr6 175348558 175348848 -13930706 + AluSg SINE Alu 18 306 -4 799 177 21 44 chr6 175348849 175349060 -13930494 + L1ME1 LINE L1 5236 5441 -744 1346 126 23 9 chr6 175349060 175349274 -13930280 + AluJb SINE Alu 87 303 -9 480 154 10 39 chr6 175349375 175349479 -13930075 + L1ME1 LINE L1 5629 5729 -435 1836 134 62 0 chr6 175349528 175349804 -13929750 + AluSx SINE Alu 1 293 -19 1224 235 123 66 chr6 175349804 175350192 -13929362 - MER34B LTR ERV1 -40 525 101 2126 122 3 3 chr6 175350192 175350495 -13929059 - AluSx SINE Alu -9 303 1 1224 235 123 66 chr6 175350495 175350603 -13928951 - MER34B LTR ERV1 -464 101 1 1000 198 24 0 chr6 175350607 175350814 -13928740 + L1ME1 LINE L1 5731 5942 -224 1550 200 118 33 chr6 175350833 175351474 -13928080 + LTR48 LTR ERV1 1 785 -2 468 214 94 68 chr6 175351475 175351667 -13927887 + L1ME1 LINE L1 5956 6152 -14 265 131 33 0 chr6 175351797 175351858 -13927696 + (TA)n Simple_repeat Simple_repeat 2 64 0 1626 164 0 55 chr6 175352050 175352360 -13927194 + AluJo SINE Alu 6 298 -14 795 179 49 62 chr6 175353207 175353285 -13926269 - MER106A DNA MER1_type -15 221 143 1585 234 91 76 chr6 175353285 175353888 -13925666 + LTR9 LTR ERV1 1 612 0 795 179 49 62 chr6 175353888 175354033 -13925521 - MER106A DNA MER1_type -93 143 1 186 43 0 0 chr6 175354313 175354336 -13925218 + (GA)n Simple_repeat Simple_repeat 2 24 0 407 278 178 43 chr6 175355596 175355967 -13923587 + MLT1L LTR MaLR 187 607 -8 2259 111 0 3 chr6 175357315 175357621 -13921933 + AluJb SINE Alu 1 305 -7 252 236 0 0 chr6 175357626 175357681 -13921873 + CT-rich Low_complexity Low_complexity 1 55 0 2243 115 3 7 chr6 175358019 175358324 -13921230 - AluSx SINE Alu -8 304 1 22 70 0 0 chr6 175358630 175358673 -13920881 + AT_rich Low_complexity Low_complexity 1 43 0 297 0 0 0 chr6 175358718 175358751 -13920803 + (CA)n Simple_repeat Simple_repeat 2 34 0 374 245 50 125 chr6 175359019 175359088 -13920466 - L2 LINE L2 -1 3312 3239 306 0 0 0 chr6 175359088 175359122 -13920432 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1537 211 7 4 chr6 175359124 175359404 -13920150 - AluJo SINE Alu -31 281 1 374 245 50 125 chr6 175359404 175359531 -13920023 - L2 LINE L2 -75 3238 3128 298 270 0 0 chr6 175359798 175359861 -13919693 + polypurine Low_complexity Low_complexity 3 65 0 1356 144 0 10 chr6 175359866 175360074 -13919480 + AluSg/x SINE Alu 87 292 -20 249 264 14 14 chr6 175360103 175360247 -13919307 + GA-rich Low_complexity Low_complexity 3 146 0 254 188 38 12 chr6 175360291 175360371 -13919183 + L2 LINE L2 2723 2804 -510 826 274 80 38 chr6 175360419 175360758 -13918796 + L2 LINE L2 2961 3313 0 27 29 0 0 chr6 175360870 175360904 -13918650 + AT_rich Low_complexity Low_complexity 1 34 0 765 140 0 0 chr6 175360907 175361014 -13918540 + FLAM_C SINE Alu 1 107 -36 768 238 43 48 chr6 175361047 175361278 -13918276 - MIR SINE MIR -20 242 13 373 313 91 25 chr6 175362245 175362443 -13917111 - L2 LINE L2 -18 3254 3044 4633 203 45 25 chr6 175363021 175363783 -13915771 + MER45B DNA AcHobo 1 791 -790 2346 94 0 28 chr6 175363783 175364103 -13915451 + AluSx SINE Alu 1 311 -1 4633 203 45 25 chr6 175364103 175364358 -13915196 + MER45B DNA AcHobo 791 1039 -1 314 185 206 0 chr6 175364360 175364452 -13915102 + L1MC4 LINE L1 6595 6705 -1337 222 242 0 0 chr6 175364456 175364522 -13915032 + (TATG)n Simple_repeat Simple_repeat 2 67 0 249 311 0 0 chr6 175364524 175364614 -13914940 - L1MC4 LINE L1 -1339 6703 6614 240 322 0 0 chr6 175364616 175364706 -13914848 - L1MC4 LINE L1 -1339 6703 6614 1168 36 0 0 chr6 175364819 175364959 -13914595 + AluY SINE Alu 170 309 -2 1699 150 57 0 chr6 175365038 175365318 -13914236 - AluJo SINE Alu -16 296 1 243 79 0 0 chr6 175365445 175365483 -13914071 + (TG)n Simple_repeat Simple_repeat 2 39 0 323 204 0 46 chr6 175366666 175366774 -13912780 + G-rich Low_complexity Low_complexity 5 107 0 338 300 237 21 chr6 175367794 175368018 -13911536 + L2 LINE L2 2043 2217 -1097 2035 119 7 3 chr6 175368018 175368311 -13911243 + AluSx SINE Alu 1 294 -18 338 300 237 21 chr6 175368311 175368423 -13911131 + L2 LINE L2 2217 2452 -862 514 17 0 0 chr6 175368904 175368962 -13910592 - AluY SINE Alu -14 296 239 1381 95 11 5 chr6 175369062 175369252 -13910302 + AluSp SINE Alu 120 310 -3 188 313 31 0 chr6 175369835 175369899 -13909655 - L2 LINE L2 -1307 2007 1942 342 186 102 68 chr6 175369950 175370068 -13909486 + MLT1A1 LTR MaLR 244 365 0 2192 113 7 3 chr6 175370591 175370900 -13908654 + AluSg SINE Alu 1 310 0 1747 181 0 13 chr6 175371395 175371704 -13907850 + AluJo SINE Alu 1 305 -7 441 90 0 0 chr6 175372508 175372575 -13906979 + (A)n Simple_repeat Simple_repeat 1 67 0 1493 170 157 10 chr6 175373478 175373778 -13905776 - MER2 DNA MER2_type 0 344 1 772 213 131 16 chr6 175375590 175375773 -13903781 + AluJo SINE Alu 85 288 -24 1801 147 7 10 chr6 175376461 175376760 -13902794 - AluJb SINE Alu -14 298 1 376 265 64 32 chr6 175377779 175377998 -13901556 + L1ME4a LINE L1 5743 5968 -153 673 109 0 27 chr6 175380533 175380643 -13898911 + L1MA5A LINE L1 6188 6294 -3 234 225 291 73 chr6 175381081 175381232 -13898322 - MIR3 SINE MIR -8 200 17 259 111 0 0 chr6 175382341 175382377 -13897177 + MER30 DNA MER1_type 1 36 -194 456 284 90 75 chr6 175382565 175382899 -13896655 + L2 LINE L2 2433 2771 -543 1270 169 173 8 chr6 175383561 175383809 -13895745 + AluJo SINE Alu 1 289 -13 2051 139 3 0 chr6 175385322 175385625 -13893929 + AluSx SINE Alu 3 306 -6 1247 141 226 13 chr6 175385659 175385893 -13893661 - AluJb SINE Alu -28 284 1 191 314 57 29 chr6 175386332 175386402 -13893152 + L2 LINE L2 3163 3234 -38 1302 162 150 8 chr6 175386708 175386961 -13892593 - AluJb SINE Alu -23 289 1 2250 88 7 7 chr6 175387678 175387974 -13891580 + AluSc SINE Alu 14 309 0 666 163 0 0 chr6 175388523 175388621 -13890933 + AluJ/FLAM SINE Alu 2 99 -213 288 0 0 0 chr6 175388809 175388841 -13890713 + (A)n Simple_repeat Simple_repeat 1 32 0 320 304 17 9 chr6 175389155 175389270 -13890284 - MIR3 SINE MIR -9 199 84 3311 212 85 31 chr6 175389866 175390768 -13888786 + L1MD2 LINE L1 5399 6349 -10 1589 179 36 10 chr6 175390881 175391183 -13888371 + AluJb SINE Alu 1 310 -2 1792 148 0 11 chr6 175391326 175391603 -13887951 + AluJb SINE Alu 11 284 -28 183 80 0 0 chr6 175391820 175391845 -13887709 + (TG)n Simple_repeat Simple_repeat 2 26 0 535 128 83 18 chr6 175392532 175392641 -13886913 - L1MD3 LINE L1 -2 7993 7878 2230 112 0 0 chr6 175392899 175393194 -13886360 - AluSg SINE Alu -11 299 5 1994 114 27 13 chr6 175393228 175393526 -13886028 + AluSx SINE Alu 1 302 -10 611 224 0 0 chr6 175393998 175394114 -13885440 - FLAM_A SINE Alu -3 139 24 457 103 0 0 chr6 175394274 175394342 -13885212 - AluSc SINE Alu -13 296 229 732 196 0 15 chr6 175394358 175394491 -13885063 + FLAM_C SINE Alu 6 136 -7 364 109 0 0 chr6 175394741 175394796 -13884758 - AluSp/q SINE Alu -10 293 239 1391 91 5 11 chr6 175394896 175395083 -13884471 - AluSp SINE Alu -126 187 2 2001 127 7 17 chr6 175395083 175395382 -13884172 - AluJb SINE Alu -16 296 1 288 0 0 0 chr6 175395798 175395830 -13883724 + (CA)n Simple_repeat Simple_repeat 2 33 0 222 37 0 0 chr6 175395843 175395870 -13883684 + (GA)n Simple_repeat Simple_repeat 2 28 0 2024 83 43 0 chr6 175395910 175396164 -13883390 - AluSq SINE Alu -48 265 1 24 0 0 0 chr6 175396164 175396188 -13883366 + AT_rich Low_complexity Low_complexity 1 24 0 736 162 0 126 chr6 175396488 175396655 -13882899 - MER8 DNA MER2_type -1 238 93 1936 144 3 22 chr6 175397225 175397538 -13882016 - AluJo SINE Alu -5 307 1 1678 100 0 44 chr6 175397552 175397801 -13881753 - AluSg/x SINE Alu -5 307 70 237 253 13 0 chr6 175401055 175401130 -13878424 + (TA)n Simple_repeat Simple_repeat 2 77 0 2116 121 7 7 chr6 175401369 175401667 -13877887 - AluSx SINE Alu -14 298 1 306 245 53 53 chr6 175401721 175401815 -13877739 + MER8 DNA MER2_type 2 95 -144 200 203 34 0 chr6 175401856 175401915 -13877639 + T-rich Low_complexity Low_complexity 3 63 0 * 345 172 0 0 chr6 175401914 175401978 -13877576 + CT-rich Low_complexity Low_complexity 1 64 0 1909 138 34 10 chr6 175401988 175402286 -13877268 - AluJo SINE Alu -7 305 1 588 146 0 0 chr6 175402288 175402377 -13877177 + MER8 DNA MER2_type 151 239 0 828 135 0 38 chr6 175402576 175402709 -13876845 + FLAM_C SINE Alu 5 132 -11 1410 169 86 22 chr6 175402815 175403093 -13876461 + AluJo SINE Alu 1 296 -16 1114 188 49 9 chr6 175403113 175403148 -13876406 + L1MC4 LINE L1 6705 6737 -1305 423 244 8 50 chr6 175403148 175403267 -13876287 + MER81 DNA DNA 1 114 0 1114 188 49 9 chr6 175403267 175403454 -13876100 + L1MC4 LINE L1 6737 6936 -1106 678 220 80 35 chr6 175403465 175403665 -13875889 + L1ME1 LINE L1 5932 6140 -26 2688 179 28 24 chr6 175403665 175404202 -13875352 - MER89 LTR ERV1 -20 539 1 383 218 45 18 chr6 175404217 175404327 -13875227 + L1MC4 LINE L1 6940 7052 -990 1808 140 22 41 chr6 175404452 175404767 -13874787 - AluJo SINE Alu -3 309 1 777 268 50 50 chr6 175404827 175405038 -13874516 + L1MC4 LINE L1 7098 7308 -734 1710 110 14 143 chr6 175405038 175405187 -13874367 + AluSp SINE Alu 1 168 -145 2312 91 3 26 chr6 175405187 175405495 -13874059 + AluSp SINE Alu 1 301 -12 2478 76 0 16 chr6 175405496 175405811 -13873743 + AluY SINE Alu 1 310 -1 1710 110 14 143 chr6 175405811 175406015 -13873539 + AluSp SINE Alu 167 310 -3 777 268 50 50 chr6 175406015 175406105 -13873449 + L1MC4 LINE L1 7307 7399 -643 2044 90 3 84 chr6 175406513 175406835 -13872719 + AluSx SINE Alu 1 296 -16 2126 128 10 3 chr6 175406839 175407145 -13872409 + AluSx SINE Alu 1 308 -4 886 182 0 0 chr6 175407340 175407494 -13872060 - AluJb SINE Alu -13 299 146 1431 165 0 21 chr6 175407499 175407735 -13871819 - AluSg SINE Alu -74 236 6 989 190 35 15 chr6 175407738 175407938 -13871616 - MLT1A1 LTR MaLR -161 204 1 21 0 0 0 chr6 175408407 175408428 -13871126 + AT_rich Low_complexity Low_complexity 1 21 0 3365 130 38 36 chr6 175408557 175408685 -13870869 + L1MA5 LINE L1 5661 5787 -513 1681 162 12 61 chr6 175408685 175409013 -13870541 + AluJo SINE Alu 1 312 0 3365 130 38 36 chr6 175409013 175409046 -13870508 + L1MA5 LINE L1 5787 5818 -482 309 51 0 0 chr6 175409046 175409085 -13870469 + (CA)n Simple_repeat Simple_repeat 2 40 0 3365 130 38 36 chr6 175409085 175409559 -13869995 + L1MA5 LINE L1 5818 6298 -2 687 184 0 0 chr6 175409573 175409687 -13869867 + FLAM_C SINE Alu 6 119 -24 481 276 51 17 chr6 175410142 175410353 -13869201 - MER20 DNA MER1_type 0 219 1 693 338 53 8 chr6 175410436 175410815 -13868739 + MLT1L LTR MaLR 214 609 -6 2065 152 0 0 chr6 175411062 175411365 -13868189 - AluJb SINE Alu -9 303 1 1934 189 80 8 chr6 175411853 175412254 -13867300 + L1MDa LINE L1 2 431 -6109 208 239 11 57 chr6 175412728 175412816 -13866738 - MIR SINE MIR -74 188 105 314 312 0 13 chr6 175414210 175414364 -13865190 + (TGG)n Simple_repeat Simple_repeat 3 154 0 381 308 0 27 chr6 175414419 175414604 -13864950 + (TGG)n Simple_repeat Simple_repeat 1 180 0 386 335 0 0 chr6 175414668 175414823 -13864731 + (TGG)n Simple_repeat Simple_repeat 3 157 0 370 347 0 0 chr6 175414917 175415093 -13864461 + (TGG)n Simple_repeat Simple_repeat 3 178 0 280 297 0 18 chr6 175415116 175415227 -13864327 + (TGG)n Simple_repeat Simple_repeat 1 109 0 * 378 236 0 92 chr6 175415156 175415351 -13864203 + (ATGGTG)n Simple_repeat Simple_repeat 1 177 0 * 429 297 0 27 chr6 175415241 175415426 -13864128 + (TGG)n Simple_repeat Simple_repeat 1 180 0 395 303 0 27 chr6 175415492 175415677 -13863877 + (TGG)n Simple_repeat Simple_repeat 1 180 0 411 350 0 0 chr6 175415743 175415923 -13863631 + (TGG)n Simple_repeat Simple_repeat 1 180 0 337 342 0 0 chr6 175415951 175416106 -13863448 + (TGG)n Simple_repeat Simple_repeat 3 157 0 258 351 6 12 chr6 175416118 175416289 -13863265 + (TGG)n Simple_repeat Simple_repeat 3 172 0 1246 102 17 6 chr6 175416515 175416692 -13862862 - AluSc SINE Alu -10 299 121 198 71 0 0 chr6 175416692 175416720 -13862834 + (TA)n Simple_repeat Simple_repeat 1 28 0 21541 58 1 1 chr6 175416844 175420165 -13859389 - L1PA4 LINE L1 -171 5984 2662 26886 49 3 2 chr6 175420265 175424386 -13855168 + L1PA5 LINE L1 2026 6152 -2 342 0 0 0 chr6 175424828 175424866 -13854688 + (TG)n Simple_repeat Simple_repeat 1 38 0 526 261 61 0 chr6 175424919 175425084 -13854470 - MIR SINE MIR -7 255 81 2211 92 10 3 chr6 175427321 175427613 -13851941 - AluSx SINE Alu -18 294 1 2835 281 145 33 chr6 175428154 175430639 -13848915 - L2 LINE L2 -40 3273 518 1181 261 25 6 chr6 175430729 175431047 -13848507 - MER33 DNA MER1_type 0 324 1 812 204 10 53 chr6 175431499 175431705 -13847849 - AluJo SINE Alu -20 292 96 26 0 0 49 chr6 175431741 175431767 -13847787 + AT_rich Low_complexity Low_complexity 1 26 -13 1366 176 73 22 chr6 175431767 175432039 -13847515 - AluJo SINE Alu -26 286 1 26 0 0 49 chr6 175432039 175432053 -13847501 + AT_rich Low_complexity Low_complexity 26 39 0 1485 186 66 48 chr6 175432072 175432449 -13847105 + MLT1B LTR MaLR 7 390 0 238 273 182 0 chr6 175432450 175432549 -13847005 + L2 LINE L2 3188 3304 -9 2219 114 0 0 chr6 175433284 175433592 -13845962 - AluSg SINE Alu -2 308 1 1849 133 3 48 chr6 175433600 175433914 -13845640 - AluJo SINE Alu 0 301 1 451 114 45 38 chr6 175434536 175434668 -13844886 + GA-rich Low_complexity Low_complexity 3 135 0 876 62 0 62 chr6 175434672 175434864 -13844690 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2149 128 3 0 chr6 175435165 175435463 -13844091 + AluSx SINE Alu 1 299 -13 3278 150 17 90 chr6 175435603 175436183 -13843371 + LTR8 LTR ERV1 1 518 -173 2330 60 0 3 chr6 175436183 175436499 -13843055 + AluY SINE Alu 1 315 0 3278 150 17 90 chr6 175436499 175436662 -13842892 + LTR8 LTR ERV1 518 691 0 946 277 84 74 chr6 175436773 175437022 -13842532 - L1ME4a LINE L1 -73 6048 5803 216 67 0 0 chr6 175437022 175437052 -13842502 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1652 151 55 4 chr6 175437054 175437326 -13842228 - AluJb SINE Alu -26 286 1 946 277 84 74 chr6 175437326 175437803 -13841751 - L1ME4a LINE L1 -318 5803 5312 251 289 96 44 chr6 175437990 175438125 -13841429 - MIR3 SINE MIR -21 187 46 488 286 32 43 chr6 175438808 175438910 -13840644 + L2 LINE L2 2034 2136 -1178 1566 117 0 9 chr6 175438910 175439132 -13840422 - AluSg/x SINE Alu -7 305 86 488 286 32 43 chr6 175439132 175439309 -13840245 + L2 LINE L2 2136 2310 -1004 1741 215 27 22 chr6 175439438 175439848 -13839706 - L1MC4 LINE L1 -1172 6870 6459 210 250 0 36 chr6 175440867 175440923 -13838631 + GA-rich Low_complexity Low_complexity 3 56 0 1204 175 20 0 chr6 175441286 175441486 -13838068 + MER20 DNA MER1_type 16 219 0 380 281 118 7 chr6 175442631 175442766 -13836788 + MIR SINE MIR 52 201 -61 203 138 0 155 chr6 175443896 175443954 -13835600 + L2 LINE L2 450 498 -2816 411 193 11 11 chr6 175446774 175446862 -13832692 - MIR SINE MIR -82 180 93 305 191 0 8 chr6 175447257 175447320 -13832234 + L1ME2 LINE L1 4713 4773 -1373 405 125 0 0 chr6 175447320 175447376 -13832178 + AluS SINE Alu 2 57 -254 3243 240 42 38 chr6 175447376 175447966 -13831588 + L1ME2 LINE L1 4771 5357 -807 2049 113 7 0 chr6 175447966 175448268 -13831286 + AluY SINE Alu 1 304 -7 3243 240 42 38 chr6 175448268 175448605 -13830949 + L1ME2 LINE L1 5357 5691 -473 1898 148 3 0 chr6 175448605 175448949 -13830605 + AluSx SINE Alu 1 312 0 3243 240 42 38 chr6 175448949 175449393 -13830161 + L1ME2 LINE L1 5691 6155 -9 2217 96 0 19 chr6 175449811 175450123 -13829431 - AluSx SINE Alu -6 306 1 379 286 75 40 chr6 175450275 175450474 -13829080 + L1ME LINE L1 5331 5537 -584 708 42 0 11 chr6 175451414 175451509 -13828045 - AluY SINE Alu -1 310 217 306 0 0 0 chr6 175451803 175451837 -13827717 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1376 157 94 0 chr6 175451839 175451985 -13827569 - AluJo SINE Alu -30 282 151 291 114 0 0 chr6 175451985 175452029 -13827525 + (TA)n Simple_repeat Simple_repeat 2 45 0 1376 157 94 0 chr6 175452029 175452137 -13827417 - AluJo SINE Alu -161 151 4 812 215 0 45 chr6 175452672 175452849 -13826705 + AluJb SINE Alu 127 295 -17 2313 145 37 53 chr6 175453301 175453460 -13826094 + MSTA LTR MaLR 1 161 -267 1450 36 0 0 chr6 175453460 175453665 -13825889 + L1PA4 LINE L1 5970 6174 0 2313 145 37 53 chr6 175453665 175453898 -13825656 + MSTA LTR MaLR 161 389 -39 2457 74 0 0 chr6 175453898 175454208 -13825346 - AluY SINE Alu -1 310 1 2313 145 37 53 chr6 175454208 175454247 -13825307 + MSTA LTR MaLR 389 427 -1 566 267 20 7 chr6 175455061 175455211 -13824343 + MIR SINE MIR 70 221 -41 1625 194 114 35 chr6 175455460 175455882 -13823672 - MLT1C LTR MaLR -12 455 1 353 277 27 0 chr6 175456216 175456328 -13823226 + L1ME2 LINE L1 6050 6164 0 896 172 6 0 chr6 175456438 175456595 -13822959 + L1PB4 LINE L1 5998 6155 -1 2427 184 20 7 chr6 175457540 175457991 -13821563 - MSTB2 LTR MaLR 0 457 1 2024 151 66 32 chr6 175458145 175458522 -13821032 - MLT1B LTR MaLR 0 390 1 1832 157 3 0 chr6 175460054 175460341 -13819213 - AluJb SINE Alu -24 288 1 2450 142 27 40 chr6 175460350 175460801 -13818753 - L1MB3 LINE L1 -4 6179 5735 952 304 90 35 chr6 175460989 175461509 -13818045 - LTR67 LTR ERVL 0 557 9 1719 306 38 6 chr6 175461591 175462124 -13817430 + MER115 DNA AcHobo 10 559 -134 4501 174 36 52 chr6 175462124 175464065 -13815489 + L1MA3 LINE L1 4402 6305 0 1712 153 19 19 chr6 175464078 175464386 -13815168 + AluSx SINE Alu 1 308 -4 309 116 58 0 chr6 175464401 175464470 -13815084 + Zaphod DNA AcHobo 3882 3954 -77 3834 130 18 90 chr6 175464470 175465256 -13814298 - L1MB4 LINE L1 -4 6176 5448 263 167 197 0 chr6 175465268 175465334 -13814220 + Zaphod DNA AcHobo 3951 4029 -2 1252 251 99 14 chr6 175465365 175465780 -13813774 - MLT1C LTR MaLR 0 467 18 1762 92 0 0 chr6 175467037 175467275 -13812279 + AluSg SINE Alu 63 300 -10 279 261 31 0 chr6 175467284 175467349 -13812205 + MER21B LTR ERV1 24 90 -773 1634 199 131 34 chr6 175467473 175468042 -13811512 + MER21B LTR ERV1 94 756 -107 1474 49 191 105 chr6 175468274 175468455 -13811099 - AluSc SINE Alu -19 290 77 2390 66 0 3 chr6 175468455 175468760 -13810794 - L1PA7 LINE L1 -8 6146 5843 1474 49 191 105 chr6 175468760 175468845 -13810709 - AluSc SINE Alu -232 77 1 4004 28 0 0 chr6 175468873 175469334 -13810220 + L1PA4 LINE L1 5691 6151 -4 23 0 0 0 chr6 175469334 175469357 -13810197 + AT_rich Low_complexity Low_complexity 1 23 0 1724 149 20 10 chr6 175469506 175469801 -13809753 + AluJb SINE Alu 1 298 -14 1293 224 55 23 chr6 175470270 175470758 -13808796 + MLT1E1 LTR MaLR 11 654 0 689 287 67 7 chr6 175470941 175471223 -13808331 + HAL1 LINE L1 1245 1543 -964 468 191 114 8 chr6 175471233 175471364 -13808190 + L1MD2 LINE L1 6211 6355 -4 282 229 0 14 chr6 175471363 175471433 -13808121 + HAL1 LINE L1 1529 1597 -910 * 256 296 221 55 chr6 175471562 175471724 -13807830 - MLT1L LTR MaLR -158 457 323 2261 88 0 0 chr6 175471724 175472018 -13807536 + AluSx SINE Alu 1 294 -18 256 296 221 55 chr6 175472018 175472240 -13807314 - MLT1L LTR MaLR -292 323 9 303 191 29 0 chr6 175472243 175472311 -13807243 + HAL1 LINE L1 1589 1658 -849 225 234 79 89 chr6 175472348 175472651 -13806903 + L1MC5 LINE L1 7520 7819 -142 241 270 0 22 chr6 175472680 175472769 -13806785 + L1MC5 LINE L1 7126 7212 -749 1862 193 33 0 chr6 175472810 175473142 -13806412 + MER7A DNA MER2_type 1 341 -5 898 156 0 100 chr6 175473149 175473329 -13806225 - MER20 DNA MER1_type -48 171 10 334 183 243 30 chr6 175473335 175473504 -13806050 + L1MC5 LINE L1 7209 7413 -548 1060 240 64 53 chr6 175473514 175473760 -13805794 + L1MC5 LINE L1 7452 7707 -254 1747 173 13 3 chr6 175473760 175474066 -13805488 - AluJb SINE Alu -1 311 3 1060 240 64 53 chr6 175474066 175474274 -13805280 + L1MC5 LINE L1 7707 7911 -50 311 192 40 60 chr6 175474596 175474747 -13804807 + HAL1 LINE L1 2002 2149 -358 5820 204 92 23 chr6 175474755 175476253 -13803301 + L1MA5 LINE L1 1111 2711 -4138 5313 150 28 44 chr6 175476238 175476733 -13802821 + L1MA5 LINE L1 5676 6178 -824 * 2116 103 0 0 chr6 175476733 175477014 -13802540 + AluSx SINE Alu 1 281 -31 225 23 23 45 chr6 175477020 175477064 -13802490 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5313 150 28 44 chr6 175477064 175477399 -13802155 + L1MA5 LINE L1 6183 6522 -480 339 44 0 0 chr6 175477399 175477444 -13802110 + (TG)n Simple_repeat Simple_repeat 2 46 0 5313 150 28 44 chr6 175477444 175477954 -13801600 + L1MA5 LINE L1 6522 7002 0 555 269 123 22 chr6 175478385 175478612 -13800942 - MIR SINE MIR -6 256 7 770 136 32 0 chr6 175478913 175479038 -13800516 + AluJb SINE Alu 182 310 -2 1917 113 17 46 chr6 175479546 175479848 -13799706 + AluSx SINE Alu 2 294 -18 367 294 43 108 chr6 175479970 175480293 -13799261 + L1MC/D LINE L1 5256 5557 -2251 2145 91 0 10 chr6 175480769 175481067 -13798487 + AluSc SINE Alu 1 295 -14 2118 107 10 7 chr6 175481575 175481883 -13797671 + AluSx SINE Alu 1 309 -3 183 339 31 0 chr6 175482028 175482093 -13797461 - L2 LINE L2 -1 3312 3246 298 261 29 0 chr6 175482196 175482265 -13797289 + L2 LINE L2 3186 3256 -16 2265 114 8 44 chr6 175482296 175482327 -13797227 - L1MA7 LINE L1 0 6291 6260 1669 160 3 26 chr6 175482327 175482633 -13796921 + AluJb SINE Alu 1 299 -13 2265 114 8 44 chr6 175482633 175482987 -13796567 - L1MA7 LINE L1 -31 6260 5920 2140 117 24 53 chr6 175483006 175483381 -13796173 - THE1B LTR MaLR 0 364 1 12342 78 6 9 chr6 175483381 175484211 -13795343 - THE1B-int LTR MaLR 0 1580 756 2159 117 0 0 chr6 175484211 175484502 -13795052 - AluSg SINE Alu -16 294 4 12342 78 6 9 chr6 175484502 175485256 -13794298 - THE1B-int LTR MaLR -824 756 1 2069 120 24 51 chr6 175485256 175485630 -13793924 - THE1B LTR MaLR 0 364 1 237 225 12 25 chr6 175485771 175485851 -13793703 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 814 164 8 0 chr6 175486402 175486530 -13793024 + FLAM_A SINE Alu 1 129 -4 349 268 39 52 chr6 175487117 175487270 -13792284 - L2 LINE L2 0 3313 3163 293 145 26 79 chr6 175487307 175487383 -13792171 + L2 LINE L2 3234 3305 -8 702 128 105 30 chr6 175487636 175487769 -13791785 - MLT1C LTR MaLR -322 145 3 260 325 25 33 chr6 175488746 175488866 -13790688 + MIR SINE MIR 47 165 -97 443 121 0 0 chr6 175489010 175489076 -13790478 - Alu SINE Alu -14 297 232 1482 194 17 7 chr6 175489237 175489536 -13790018 + AluJo SINE Alu 2 303 -9 2049 125 0 0 chr6 175489716 175490011 -13789543 + AluSx SINE Alu 1 295 -17 2194 95 0 3 chr6 175490011 175490306 -13789248 + AluSc SINE Alu 1 294 -15 2255 96 0 0 chr6 175490317 175490620 -13788934 + AluY SINE Alu 9 311 0 216 97 0 0 chr6 175491716 175491747 -13787807 + (T)n Simple_repeat Simple_repeat 1 31 0 385 143 0 0 chr6 175491761 175491824 -13787730 - LTR30 LTR ERV1 -108 614 552 1756 132 71 25 chr6 175491847 175492128 -13787426 - AluSx SINE Alu -16 296 3 2167 102 53 0 chr6 175492131 175492416 -13787138 - AluSx SINE Alu -12 300 1 1805 159 93 9 chr6 175492427 175492806 -13786748 - L1MB8 LINE L1 -1 6177 5769 2226 95 6 31 chr6 175493225 175493542 -13786012 + AluSc SINE Alu 1 309 0 2300 94 0 0 chr6 175493902 175494189 -13785365 + AluY SINE Alu 15 301 -10 562 283 68 60 chr6 175494564 175494917 -13784637 - L2 LINE L2 -1 3312 2957 283 125 89 0 chr6 175495008 175495064 -13784490 + LOR1a LTR ERV1 238 298 -199 759 205 15 46 chr6 175495156 175495351 -13784203 + LOR1a LTR ERV1 309 497 0 1635 160 0 19 chr6 175495426 175495695 -13783859 - AluJo SINE Alu -14 298 35 250 284 124 30 chr6 175496418 175496587 -13782967 + LTR33A LTR ERVL 337 521 -2 1067 64 0 0 chr6 175497169 175497294 -13782260 + AluSq/x SINE Alu 1 125 -188 198 0 0 0 chr6 175497298 175497320 -13782234 + (TAA)n Simple_repeat Simple_repeat 2 23 0 393 196 56 188 chr6 175498116 175498416 -13781138 - LTR37B LTR ERV1 -158 310 63 1729 156 15 84 chr6 175498416 175498750 -13780804 + AluJo SINE Alu 1 311 -1 393 196 56 188 chr6 175498750 175498806 -13780748 - LTR37B LTR ERV1 -405 63 1 200 304 0 0 chr6 175498984 175499040 -13780514 + G-rich Low_complexity Low_complexity 1 56 0 1584 199 17 14 chr6 175499764 175500056 -13779498 + AluJo SINE Alu 1 293 -19 351 273 33 20 chr6 175500476 175500626 -13778928 - Charlie7 DNA MER1_type -4 2608 2457 904 134 24 0 chr6 175500629 175500756 -13778798 - AluJo SINE Alu -178 134 5 2738 193 6 6 chr6 175500966 175501452 -13778102 - MER66B LTR ERV1 0 486 1 427 227 125 11 chr6 175501452 175501617 -13777937 + L2 LINE L2 2420 2608 -706 252 318 173 16 chr6 175501633 175502145 -13777409 + L2 LINE L2 2710 3308 -5 1866 193 41 60 chr6 175503168 175503680 -13775874 + MLT1D LTR MaLR 1 502 -3 313 265 68 61 chr6 175503804 175503951 -13775603 - L1ME4a LINE L1 -4 6117 5970 1798 163 26 10 chr6 175503959 175504265 -13775289 - AluJb SINE Alu -1 311 1 2185 119 7 13 chr6 175504276 175504579 -13774975 - AluSq SINE Alu -12 301 1 1814 117 185 22 chr6 175505014 175505342 -13774212 + MSTA LTR MaLR 1 397 -31 2352 108 10 0 chr6 175505342 175505649 -13773905 - AluSx SINE Alu -1 311 2 1814 117 185 22 chr6 175505649 175505687 -13773867 + MSTA LTR MaLR 397 427 -1 180 77 0 0 chr6 175506033 175506059 -13773495 + (A)n Simple_repeat Simple_repeat 1 26 0 278 369 10 0 chr6 175506207 175506310 -13773244 + MIR SINE MIR 144 247 -15 2376 173 26 17 chr6 175506383 175506805 -13772749 + MSTB LTR MaLR 1 426 0 428 292 58 6 chr6 175507431 175507602 -13771952 + MER104 DNA MER2_type 1 180 0 332 254 108 0 chr6 175507937 175508067 -13771487 - MER104 DNA Tc2 -28 152 9 1983 114 0 60 chr6 175508151 175508312 -13771242 - AluSx SINE Alu -15 297 163 2193 98 3 16 chr6 175508312 175508618 -13770936 - AluSq SINE Alu 0 313 12 1983 114 0 60 chr6 175508618 175508772 -13770782 - AluSx SINE Alu -149 163 1 1476 194 48 14 chr6 175509078 175509429 -13770125 + MLT1A2 LTR MaLR 1 363 -11 1598 147 25 46 chr6 175511582 175511867 -13767687 + AluJo SINE Alu 11 289 -23 330 290 0 28 chr6 175513160 175513267 -13766287 + L2 LINE L2 2389 2492 -822 457 266 119 17 chr6 175513648 175513825 -13765729 + L2 LINE L2 3101 3295 -18 1517 153 21 102 chr6 175516379 175516713 -13762841 + AluYb8 SINE Alu 1 307 -11 321 230 0 0 chr6 175517139 175517265 -13762289 + G-rich Low_complexity Low_complexity 1 126 0 25996 67 3 0 chr6 175517365 175520835 -13758719 - L1P LINE L1 -2664 3482 2 1083 104 0 0 chr6 175520837 175520972 -13758582 - AluSc SINE Alu -174 135 1 2189 88 4 0 chr6 175521671 175521943 -13757611 - AluSp SINE Alu -40 273 1 1231 188 22 116 chr6 175521951 175522271 -13757283 - AluJo SINE Alu -11 291 2 345 100 0 0 chr6 175522271 175522321 -13757233 + (T)n Simple_repeat Simple_repeat 1 50 0 2012 146 7 10 chr6 175522378 175522680 -13756874 + AluSx SINE Alu 1 301 -11 764 157 0 0 chr6 175522680 175522795 -13756759 - AluJo/FLAM SINE Alu -189 123 9 1238 121 6 0 chr6 175523386 175523552 -13756002 - FRAM SINE Alu -10 166 1 2377 91 3 0 chr6 175524305 175524602 -13754952 - AluY SINE Alu -13 298 1 1695 129 65 80 chr6 175525953 175526340 -13753214 + Tigger2a DNA MER2_type 1 381 -53 1428 144 9 0 chr6 175526377 175526599 -13752955 - AluJo SINE Alu -4 308 85 365 146 0 0 chr6 175526605 175526660 -13752894 - AluSc SINE Alu -50 249 195 2204 113 0 0 chr6 175526660 175526982 -13752572 - AluSg SINE Alu 0 310 1 1072 97 0 0 chr6 175526982 175527116 -13752438 - AluSq/x SINE Alu -178 135 2 297 242 30 0 chr6 175527117 175527183 -13752371 + Tigger2a DNA MER2_type 377 444 0 217 167 37 74 chr6 175527187 175527241 -13752313 + MIR SINE MIR 53 104 -158 420 20 0 0 chr6 175527891 175527940 -13751614 + (TG)n Simple_repeat Simple_repeat 2 50 0 1677 174 18 7 chr6 175527940 175528215 -13751339 - AluJo SINE Alu -34 278 1 491 229 119 94 chr6 175528223 175528355 -13751199 + MLT1J LTR MaLR 103 230 -281 2209 123 3 3 chr6 175528355 175528657 -13750897 + AluSx SINE Alu 1 302 -10 491 229 119 94 chr6 175528657 175528895 -13750659 + MLT1J LTR MaLR 230 482 -29 1666 157 11 15 chr6 175529176 175529444 -13750110 + AluJb SINE Alu 1 267 -45 187 350 129 31 chr6 175529773 175529936 -13749618 + L2 LINE L2 2474 2652 -662 2057 117 6 25 chr6 175530071 175530388 -13749166 + AluSx SINE Alu 1 311 -1 196 107 0 54 chr6 175531595 175531651 -13747903 + (CGGGG)n Simple_repeat Simple_repeat 3 55 0 211 314 12 0 chr6 175531719 175531805 -13747749 + (CAG)n Simple_repeat Simple_repeat 3 89 0 22 0 0 0 chr6 175533936 175533958 -13745596 + AT_rich Low_complexity Low_complexity 1 22 0 407 277 102 63 chr6 175534003 175534288 -13745266 - HAL1b LINE L1 -193 1155 860 23 0 0 0 chr6 175534504 175534527 -13745027 + AT_rich Low_complexity Low_complexity 1 23 0 700 158 9 0 chr6 175534542 175534656 -13744898 - FLAM_C SINE Alu -18 115 1 2246 105 7 10 chr6 175534664 175534969 -13744585 - AluSx SINE Alu -8 304 1 2260 125 0 0 chr6 175534981 175535293 -13744261 - AluSx SINE Alu 0 312 1 559 271 126 29 chr6 175535557 175535937 -13743617 - L2 LINE L2 -157 3156 2740 221 364 10 0 chr6 175535967 175536066 -13743488 - L2 LINE L2 -685 2629 2530 742 208 53 48 chr6 175536107 175536314 -13743240 - L2 LINE L2 -773 2541 2334 2439 79 6 16 chr6 175536930 175537245 -13742309 - AluSq SINE Alu -1 312 1 1956 140 11 0 chr6 175537478 175537763 -13741791 - AluSx SINE Alu -19 293 6 218 221 221 29 chr6 175537783 175537887 -13741667 + MIR SINE MIR 66 189 -73 2101 118 10 13 chr6 175538293 175538607 -13740947 - AluSq SINE Alu 0 313 1 1737 149 40 10 chr6 175539136 175539432 -13740122 + L1PA16 LINE L1 5851 6156 -5 2481 73 3 16 chr6 175539432 175539747 -13739807 + AluSp SINE Alu 3 313 0 2316 100 13 0 chr6 175540335 175540636 -13738918 - AluSx SINE Alu -7 305 1 182 172 0 0 chr6 175540814 175540843 -13738711 - MIR SINE MIR -141 67 39 2194 90 0 4 chr6 175541489 175541768 -13737786 - AluSx SINE Alu -32 280 3 3464 144 73 100 chr6 175543034 175543832 -13735722 - LTR39 LTR ERV1 -7 776 1 2271 118 0 0 chr6 175544013 175544318 -13735236 - AluSx SINE Alu -7 305 1 24 0 0 0 chr6 175544363 175544387 -13735167 + AT_rich Low_complexity Low_complexity 1 24 0 183 80 0 0 chr6 175544550 175544575 -13734979 + (TG)n Simple_repeat Simple_repeat 1 25 0 960 107 30 0 chr6 175545045 175545176 -13734378 + AluSq/x SINE Alu 1 135 -178 1481 145 88 0 chr6 175546109 175546358 -13733196 - MER21B LTR ERV1 -114 749 479 866 194 0 0 chr6 175546425 175546580 -13732974 - AluSg/x SINE Alu -10 300 146 1282 165 0 0 chr6 175546743 175546937 -13732617 - AluSx SINE Alu -118 194 1 2098 167 135 12 chr6 175546937 175547351 -13732203 - MER21B LTR ERV1 -387 476 12 824 193 21 0 chr6 175547397 175547542 -13732012 + FRAM SINE Alu 1 146 -30 185 330 22 66 chr6 175548257 175548348 -13731206 + MIR3 SINE MIR 14 100 -108 43033 58 2 2 chr6 175548426 175554567 -13724987 - L1PA5 LINE L1 -2 6152 11 256 146 0 0 chr6 175554827 175554875 -13724679 + L1M2 LINE L1 2792 2839 -4010 1474 193 17 34 chr6 175554875 175555170 -13724384 + AluJo SINE Alu 1 290 -22 1206 173 49 29 chr6 175555200 175555510 -13724044 + L1M2 LINE L1 2820 3139 -3709 759 177 8 8 chr6 175555533 175555657 -13723897 - FLAM_C SINE Alu -18 125 2 1136 216 44 50 chr6 175555659 175555956 -13723598 + L1M2 LINE L1 3130 3424 -3424 2383 97 3 0 chr6 175556567 175556876 -13722678 - AluSp SINE Alu -3 310 1 2368 103 3 0 chr6 175557234 175557544 -13722010 - AluSp SINE Alu -2 311 1 355 296 171 26 chr6 175557569 175557682 -13721872 - MER5B DNA MER1_type -1 177 35 1569 154 14 52 chr6 175557682 175557968 -13721586 - AluJb SINE Alu -36 276 2 355 296 171 26 chr6 175557968 175558006 -13721548 - MER5B DNA MER1_type -143 35 4 832 158 0 36 chr6 175558402 175558541 -13721013 - AluJo SINE Alu -178 134 1 880 194 0 0 chr6 175558669 175558824 -13720730 + AluJb SINE Alu 140 294 -18 291 275 12 0 chr6 175558824 175558904 -13720650 + MLT1J1 LTR MaLR 353 433 -13 594 238 149 103 chr6 175559099 175559469 -13720085 + MLT1K LTR MaLR 201 587 -1 893 298 207 30 chr6 175559485 175559689 -13719865 + L2 LINE L2 2247 2414 -899 2207 87 31 0 chr6 175559689 175559976 -13719578 - AluSp SINE Alu -17 296 1 893 298 207 30 chr6 175559976 175560644 -13718910 + L2 LINE L2 2414 3289 -24 605 209 137 43 chr6 175560891 175561105 -13718449 - MLT1B LTR MaLR 0 390 187 2475 126 11 0 chr6 175561165 175561522 -13718032 - L1PB1 LINE L1 -7 6144 5784 208 111 44 0 chr6 175561523 175561568 -13717986 + (TATATG)n Simple_repeat Simple_repeat 1 47 0 350 184 72 16 chr6 175561575 175561700 -13717854 + (ATATG)n Simple_repeat Simple_repeat 4 135 0 188 99 33 74 chr6 175561703 175561824 -13717730 + (TA)n Simple_repeat Simple_repeat 2 117 0 665 63 105 0 chr6 175561839 175561934 -13717620 - L1PB1 LINE L1 -360 5791 5687 251 139 0 0 chr6 175561937 175561973 -13717581 + Alu SINE Alu 1 36 -266 15129 195 34 19 chr6 175561975 175562082 -13717472 - L1P5 LINE L1 -360 6507 6403 2032 154 3 0 chr6 175562082 175562387 -13717167 + AluSq SINE Alu 1 306 -7 15129 195 34 19 chr6 175562387 175562522 -13717032 - L1P5 LINE L1 -464 6403 6271 5198 88 49 1 chr6 175562522 175563179 -13716375 - LTR12 LTR ERV1 0 688 1 15129 195 34 19 chr6 175563179 175563934 -13715620 - L1P5 LINE L1 -596 6271 5528 6909 31 2 9 chr6 175563934 175564730 -13714824 - SVA Other Other 0 1386 596 15129 195 34 19 chr6 175564730 175565628 -13713926 - L1P5 LINE L1 -1339 5528 4644 2309 91 0 7 chr6 175565628 175565926 -13713628 + AluSg SINE Alu 1 296 -14 15129 195 34 19 chr6 175565926 175567775 -13711779 - L1P5 LINE L1 -2223 4644 2823 279 0 0 0 chr6 175567775 175567806 -13711748 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 15129 195 34 19 chr6 175567806 175569967 -13709587 - L1P5 LINE L1 -4044 2823 280 207 317 0 61 chr6 175569967 175570049 -13709505 + MER91A DNA MER1_type 120 196 0 641 185 0 34 chr6 175570569 175570718 -13708836 - FLAM_A SINE Alu 0 142 19 259 161 32 0 chr6 175570811 175570873 -13708681 - L1MD3 LINE L1 -1 7994 7931 808 254 9 18 chr6 175570883 175571100 -13708454 - L1MC4 LINE L1 -143 7899 7685 12893 59 2 2 chr6 175621123 175622898 -13656656 + L1P LINE L1 2769 4542 -1604 8542 81 2 3 chr6 175623012 175624257 -13655297 - L1P LINE L1 -3606 2540 1297 267 276 0 0 chr6 175624357 175624455 -13655099 + (TTG)n Simple_repeat Simple_repeat 2 99 0 615 229 0 0 chr6 175624463 175624633 -13654921 + (CTG)n Simple_repeat Simple_repeat 1 170 0 531 268 0 0 chr6 175624679 175624858 -13654696 + (CTG)n Simple_repeat Simple_repeat 1 179 0 322 280 9 9 chr6 175624858 175624965 -13654589 + (TTG)n Simple_repeat Simple_repeat 2 108 0 537 234 0 4 chr6 175624967 175625215 -13654339 + (CTG)n Simple_repeat Simple_repeat 1 246 0 515 253 0 16 chr6 175625257 175625439 -13654115 + (CTG)n Simple_repeat Simple_repeat 2 180 0 242 229 0 0 chr6 175625440 175625488 -13654066 + (TTG)n Simple_repeat Simple_repeat 1 48 0 1438 257 107 26 chr6 175625595 175626326 -13653228 - HAL1 LINE L1 -37 2470 1681 237 239 65 22 chr6 175626387 175626479 -13653075 + LTR33A LTR ERVL 64 159 -364 2130 138 33 25 chr6 175626644 175627005 -13652549 + THE1B LTR MaLR 1 364 0 2432 72 3 39 chr6 175627020 175627379 -13652175 - MER4E LTR ERV1 0 766 421 6519 158 19 30 chr6 175627386 175628633 -13650921 + L1P LINE L1 11 1243 -4903 2661 119 0 16 chr6 175628738 175629184 -13650370 + HERVH LTR ERV1 2392 2830 -4883 4866 126 34 69 chr6 175629184 175630150 -13649404 + HERVH LTR ERV1 3357 4288 -3425 5342 90 11 5 chr6 175630150 175630939 -13648615 + HERVH LTR ERV1 4221 5014 -2699 2441 106 43 24 chr6 175630944 175631367 -13648187 + HERVH LTR ERV1 7283 7713 0 1938 100 21 9 chr6 175631367 175631764 -13647790 + LTR7 LTR ERV1 1 448 -2 1236 106 46 138 chr6 175631765 175632048 -13647506 + MER41-int LTR ERV1 434 690 -5256 2131 141 39 6 chr6 175632049 175632404 -13647150 + MER41-int LTR ERV1 2005 2371 -5166 510 115 81 0 chr6 175632401 175632488 -13647066 + MER41-int LTR ERV1 1898 1991 -3955 * 3817 134 104 6 chr6 175632496 175633206 -13646348 + MER41-int LTR ERV1 2167 2946 -3000 2639 93 45 5 chr6 175633193 175633633 -13645921 + MER41-int LTR ERV1 3300 3757 -2189 * 7086 49 8 2 chr6 175633762 175635310 -13644244 + L1PA6 LINE L1 4598 6153 -1 2418 128 78 5 chr6 175635311 175635732 -13643822 - MER4E LTR ERV1 -327 452 1 10060 102 14 38 chr6 175635738 175637339 -13642215 + THE1B-int LTR MaLR 19 1580 0 2242 137 28 8 chr6 175637339 175637696 -13641858 + THE1B LTR MaLR 1 364 0 380 343 43 15 chr6 175637782 175638109 -13641445 + ERVL LTR ERVL 813 1148 -4616 2452 88 0 0 chr6 175638170 175638476 -13641078 + AluY SINE Alu 1 306 -5 637 285 78 21 chr6 175638821 175639271 -13640283 + L1MC4a LINE L1 5379 5789 -332 1381 177 90 7 chr6 175639468 175639778 -13639776 + L1MD2 LINE L1 5565 5900 -459 6304 226 42 51 chr6 175639955 175641967 -13637587 + L1ME1 LINE L1 2654 4640 -1506 2533 84 0 0 chr6 175641967 175642277 -13637277 + AluY SINE Alu 1 310 -1 6304 226 42 51 chr6 175642277 175642710 -13636844 + L1ME1 LINE L1 4640 5076 -1070 2655 214 61 80 chr6 175642717 175643642 -13635912 + L1ME1 LINE L1 5254 6160 -6 414 295 125 34 chr6 175643838 175644279 -13635275 - L2 LINE L2 -1 3312 2832 732 257 91 19 chr6 175644348 175644613 -13634941 - L2 LINE L2 -627 2687 2404 183 80 0 0 chr6 175645232 175645257 -13634297 + (A)n Simple_repeat Simple_repeat 1 25 0 582 301 10 5 chr6 175645896 175646095 -13633459 - MER3 DNA MER1_type 0 209 10 249 339 48 8 chr6 175648305 175648429 -13631125 + MIR3 SINE MIR 38 166 -42 691 191 0 8 chr6 175648455 175648581 -13630973 + MER20 DNA MER1_type 95 219 0 1398 149 0 9 chr6 175648717 175648938 -13630616 - AluJo SINE Alu -6 306 88 416 279 58 35 chr6 175649507 175649679 -13629875 + L2 LINE L2 3128 3303 -10 449 305 15 29 chr6 175650167 175650439 -13629115 + L1MEd LINE L1 934 1201 -4918 349 143 0 0 chr6 175650787 175650843 -13628711 + MER89 LTR ERV1 2 57 -502 731 209 20 46 chr6 175650853 175651049 -13628505 + MER89 LTR ERV1 287 477 -82 186 133 0 0 chr6 175651674 175651704 -13627850 + (CAGAG)n Simple_repeat Simple_repeat 4 33 0 1845 201 37 3 chr6 175651902 175652255 -13627299 - MLT1A1 LTR MaLR 0 365 1 1752 199 78 9 chr6 175652396 175652821 -13626733 - MLT1C LTR MaLR 0 467 15 1727 229 107 79 chr6 175652980 175653772 -13625782 - MER21B LTR ERV1 -5 926 1 5860 173 35 18 chr6 175653866 175654981 -13624573 - MER21B-int LTR ERV1 -55 4136 3003 5273 181 30 11 chr6 175654985 175655974 -13623580 - MER21B-int LTR ERV1 -1367 2824 1817 2053 110 4 0 chr6 175655979 175656252 -13623302 + AluSx SINE Alu 4 277 -35 228 35 0 0 chr6 175656253 175656282 -13623272 + (TC)n Simple_repeat Simple_repeat 2 30 0 4636 218 27 2 chr6 175656294 175657221 -13622333 - MER21B-int LTR ERV1 -3240 951 2 300 256 36 54 chr6 175657471 175657639 -13621915 - L1MC5 LINE L1 -184 7777 7613 347 234 47 9 chr6 175657768 175657875 -13621679 - L1MC5 LINE L1 -549 7412 7302 217 0 61 0 chr6 175658138 175658171 -13621383 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1904 151 0 18 chr6 175658173 175658458 -13621096 - AluSx SINE Alu -32 280 1 399 263 32 58 chr6 175658469 175658659 -13620895 - L1MC4 LINE L1 -1035 7007 6823 778 152 8 23 chr6 175659333 175659465 -13620089 - FLAM_C SINE Alu -3 130 1 963 256 63 47 chr6 175659526 175659988 -13619566 - MER39 LTR ERV1 -23 684 5 417 316 152 15 chr6 175660753 175661089 -13618465 + L3 LINE CR1 1193 1574 -3 2676 157 128 24 chr6 175662996 175663589 -13615965 - MER39 LTR ERV1 0 707 1 320 304 20 40 chr6 175665657 175665805 -13613749 - MIR3 SINE MIR -55 153 9 633 209 52 0 chr6 175666092 175666245 -13613309 + FRAM SINE Alu 1 161 -5 208 258 65 0 chr6 175667636 175667698 -13611856 - L2 LINE L2 -4 3268 3203 239 232 40 0 chr6 175667739 175667838 -13611716 + (TA)n Simple_repeat Simple_repeat 1 103 0 2337 115 0 0 chr6 175669083 175669387 -13610167 - AluSx SINE Alu -8 304 1 1613 243 70 0 chr6 175669405 175669788 -13609766 + MER63B DNA MER1_type 3 412 -24 2574 144 11 103 chr6 175669825 175670360 -13609194 + MER66B LTR ERV1 1 486 0 287 284 27 40 chr6 175670440 175670575 -13608979 - MIR SINE MIR -26 236 104 414 211 163 72 chr6 175670575 175670741 -13608813 - MER5A DNA MER1_type 0 189 9 851 60 0 26 chr6 175671301 175671417 -13608137 + L1PA10 LINE L1 6053 6165 -3 239 305 185 0 chr6 175671878 175672029 -13607525 - MIR SINE MIR -37 225 47 239 311 14 0 chr6 175673448 175673522 -13606032 + MER63B DNA MER1_type 351 425 -9 427 265 136 12 chr6 175674548 175674710 -13604844 - MER117 DNA MER1_type -15 182 1 1166 215 95 34 chr6 175674952 175675301 -13604253 - MLT1A2 LTR MaLR 0 374 5 2259 116 0 0 chr6 175676626 175676918 -13602636 - AluSx SINE Alu -20 292 1 598 163 0 10 chr6 175677083 175677181 -13602373 + AluS SINE Alu 2 98 -215 641 213 62 12 chr6 175677677 175677837 -13601717 - MER5B DNA MER1_type -10 168 1 1824 165 27 0 chr6 175678528 175678825 -13600729 + AluSx SINE Alu 1 305 -7 1856 145 12 22 chr6 175679977 175680301 -13599253 + L1MC1 LINE L1 6013 6333 0 21 0 0 0 chr6 175681011 175681032 -13598522 + AT_rich Low_complexity Low_complexity 1 21 0 883 86 0 0 chr6 175681092 175681208 -13598346 - L1PB1 LINE L1 0 6151 6036 3579 135 86 21 chr6 175682225 175682879 -13596675 + LTR34 LTR ERV1 4 699 0 4164 130 8 14 chr6 175683384 175684022 -13595532 - MER41B LTR ERV1 -1 634 1 349 174 14 0 chr6 175684613 175684682 -13594872 - MIR SINE MIR -27 235 166 4106 98 4 4 chr6 175684685 175685237 -13594317 - MER41A LTR ERV1 0 554 3 12851 87 24 18 chr6 175685238 175687081 -13592473 - MER41A-int LTR ERV1 -1 5945 4092 10055 127 22 40 chr6 175687186 175689344 -13590210 - HERVH LTR ERV1 -5406 2307 1 2162 90 17 9 chr6 175689352 175689745 -13589809 - LTR7 LTR ERV1 -8 442 1 2852 135 16 16 chr6 175689753 175690184 -13589370 - MER41A-int LTR ERV1 -5515 431 1 3739 122 13 4 chr6 175690184 175690733 -13588821 - MER41A LTR ERV1 0 554 1 4194 158 54 65 chr6 175690733 175691646 -13587908 - MER4D LTR ERV1 0 903 1 2392 136 17 25 chr6 175691661 175691937 -13587617 - MER57A LTR ERV1 0 403 129 4824 99 33 0 chr6 175691937 175692606 -13586948 - LTR8 LTR ERV1 0 691 1 2392 136 17 25 chr6 175692606 175692735 -13586819 - MER57A LTR ERV1 -274 129 1 217 336 47 23 chr6 175692738 175692866 -13586688 - MIR SINE MIR -111 151 21 1364 270 147 36 chr6 175693720 175694368 -13585186 + L1MC4a LINE L1 4903 4954 -1192 2139 112 0 22 chr6 175694368 175694681 -13584873 + AluSg SINE Alu 1 306 -4 1364 270 147 36 chr6 175694681 175695187 -13584367 + L1MC4a LINE L1 4954 5402 -744 194 188 29 116 chr6 175695374 175695420 -13584134 - MIR3 SINE MIR -3 205 165 622 255 124 59 chr6 175695420 175695726 -13583828 + MER102a DNA MER1_type 1 326 -4 194 188 29 116 chr6 175695726 175695748 -13583806 - MIR3 SINE MIR -43 165 143 354 277 0 40 chr6 175695802 175695903 -13583651 + L2 LINE L2 3173 3269 -3 329 244 185 0 chr6 175695981 175696116 -13583438 + MIR SINE MIR 14 173 -89 209 226 57 0 chr6 175696240 175696293 -13583261 + MIR SINE MIR 100 155 -107 15249 135 25 7 chr6 175696343 175698711 -13580843 + Tigger1 DNA MER2_type 8 2418 0 537 282 22 61 chr6 175698711 175698892 -13580662 - MIR SINE MIR -64 198 25 363 212 0 0 chr6 175698996 175699081 -13580473 + (TTG)n Simple_repeat Simple_repeat 2 86 0 564 236 24 0 chr6 175699212 175699339 -13580215 + L1MD2 LINE L1 6213 6342 -17 189 0 0 0 chr6 175699375 175699396 -13580158 + (A)n Simple_repeat Simple_repeat 1 21 0 1092 177 8 76 chr6 175699581 175699818 -13579736 + MER58A DNA MER1_type 2 222 -2 197 368 56 50 chr6 175702256 175702634 -13576920 - L2 LINE L2 -42 3230 2851 2870 125 29 2 chr6 175703017 175703432 -13576122 + MSTA LTR MaLR 1 426 -2 227 205 98 62 chr6 175703497 175703609 -13575945 + L1ME4a LINE L1 5989 6104 -17 900 239 79 59 chr6 175703859 175704214 -13575340 - L1ME1 LINE L1 -5 6161 5800 247 241 190 25 chr6 175704293 175704451 -13575103 - LTR16C LTR ERVL -51 440 257 1031 284 35 52 chr6 175704669 175705187 -13574367 - L1ME1 LINE L1 -391 5779 5271 * 15273 206 36 40 chr6 175705180 175705958 -13573596 - L1MA5A LINE L1 -4 6935 6156 2020 99 58 10 chr6 175705958 175706250 -13573304 + AluSc SINE Alu 1 306 -3 15273 206 36 40 chr6 175706250 175707749 -13571805 - L1MA5A LINE L1 -783 6156 4654 2042 156 0 6 chr6 175707749 175708063 -13571491 + AluSx SINE Alu 1 312 0 15273 206 36 40 chr6 175708063 175712524 -13567030 - L1MA5A LINE L1 -2285 4654 14 1959 129 7 20 chr6 175712524 175712826 -13566728 + AluSx SINE Alu 1 298 -14 973 302 130 39 chr6 175712846 175714219 -13565335 - L1ME1 LINE L1 -896 5250 3685 312 316 43 0 chr6 175714274 175714413 -13565141 + LTR16B LTR ERVL 42 186 -278 452 229 19 9 chr6 175714514 175714619 -13564935 + LTR16B LTR ERVL 359 464 0 2627 49 29 35 chr6 175714666 175715011 -13564543 + L1PA4 LINE L1 5810 6152 -3 488 247 60 106 chr6 175715087 175715569 -13563985 - L1ME1 LINE L1 -2610 3536 3077 29017 36 3 1 chr6 175715812 175720046 -13559508 - L1PA4 LINE L1 0 6155 1917 1262 65 0 0 chr6 175720042 175720197 -13559357 + L1PA4 LINE L1 1756 1910 -4236 * 2378 84 0 0 chr6 175720783 175721082 -13558472 + AluY SINE Alu 1 299 -12 2272 74 3 7 chr6 175721415 175721730 -13557824 + AluY SINE Alu 1 314 0 304 305 92 46 chr6 175722129 175722260 -13557294 - L2 LINE L2 -5 3308 3172 281 378 10 0 chr6 175722372 175722470 -13557084 - L2 LINE L2 -195 3077 2979 4181 135 13 24 chr6 175722573 175723245 -13556309 - L1MB3 LINE L1 -2 6181 5517 2158 144 21 45 chr6 175723795 175724169 -13555385 + MLT1A1 LTR MaLR 1 365 0 574 112 9 9 chr6 175724971 175725078 -13554476 + (TC)n Simple_repeat Simple_repeat 1 107 0 188 111 28 0 chr6 175725077 175725113 -13554441 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 304 250 76 28 chr6 175725113 175725257 -13554297 - L1MB3 LINE L1 -673 5448 5298 897 118 96 0 chr6 175725623 175725803 -13553751 + AluSg/x SINE Alu 137 329 0 504 278 11 28 chr6 175727343 175727523 -13552031 + L2 LINE L2 3133 3309 -4 5028 88 10 31 chr6 175728354 175729035 -13550519 + PABL_B LTR ERV1 1 667 0 2135 117 0 0 chr6 175729535 175729849 -13549705 - AluSx SINE Alu 0 314 1 1513 163 6 97 chr6 175730931 175731262 -13548292 + AluJo SINE Alu 1 301 -11 484 241 23 100 chr6 175732100 175732320 -13547234 + L2 LINE L2 3106 3308 -5 251 221 44 0 chr6 175733619 175733777 -13545777 + (TA)n Simple_repeat Simple_repeat 2 166 0 486 280 32 11 chr6 175733789 175734187 -13545367 + (CATA)n Simple_repeat Simple_repeat 1 406 0 421 256 39 3 chr6 175734218 175734532 -13545022 + (TA)n Simple_repeat Simple_repeat 1 325 0 236 248 212 0 chr6 175735021 175735134 -13544420 + L1MC/D LINE L1 5762 5898 -1910 2637 124 6 6 chr6 175735533 175735897 -13543657 - THE1B LTR MaLR 0 364 1 247 253 121 132 chr6 175736177 175736540 -13543014 + MLT1J LTR MaLR 153 511 0 939 144 11 53 chr6 175736802 175736990 -13542564 + LTR64 LTR ERVK 12 191 -367 1456 163 7 48 chr6 175736992 175737322 -13542232 + AluJb SINE Alu 1 318 0 6114 36 1 0 chr6 175737322 175738053 -13541501 - L1PA4 LINE L1 -811 5335 4604 7276 24 0 1 chr6 175738053 175738853 -13540701 + L1PA4 LINE L1 5353 6152 -3 1551 179 149 12 chr6 175738866 175739201 -13540353 + LTR64 LTR ERVK 178 558 0 2168 114 7 7 chr6 175739965 175740263 -13539291 + AluSq SINE Alu 1 298 -15 703 296 88 4 chr6 175740398 175740638 -13538916 + MIR SINE MIR 3 262 0 2077 153 26 32 chr6 175743656 175743930 -13535624 + MER2 DNA MER2_type 1 274 -70 1869 161 7 3 chr6 175743930 175744235 -13535319 - AluJo SINE Alu -6 306 1 2077 153 26 32 chr6 175744235 175744306 -13535248 + MER2 DNA MER2_type 274 344 0 1416 222 42 3 chr6 175744991 175745297 -13534257 + MER58B DNA MER1_type 10 327 -14 246 282 78 29 chr6 175745379 175745482 -13534072 + MIR SINE MIR 125 232 -30 2288 105 3 0 chr6 175745792 175746096 -13533458 + AluSp SINE Alu 1 305 -8 278 354 50 39 chr6 175746246 175746427 -13533127 + MER5A DNA MER1_type 7 189 0 411 294 21 75 chr6 175746470 175746657 -13532897 - MIR SINE MIR -14 248 72 310 346 0 19 chr6 175747718 175747822 -13531732 + C-rich Low_complexity Low_complexity 6 107 0 4372 239 106 23 chr6 175749668 175750251 -13529303 - L1MEc LINE L1 -3885 2511 1978 580 218 230 17 chr6 175750251 175750337 -13529217 + MER58C DNA MER1_type 5 71 -2349 2150 84 0 57 chr6 175750337 175750709 -13528845 + AluY SINE Alu 1 355 0 580 218 230 17 chr6 175750709 175750795 -13528759 + MER58C DNA MER1_type 71 215 0 4372 239 106 23 chr6 175750795 175751212 -13528342 - L1MEc LINE L1 -4418 1978 1597 1540 149 0 0 chr6 175751212 175751440 -13528114 - AluJb SINE Alu -3 309 82 4372 239 106 23 chr6 175751440 175752142 -13527412 - L1MEc LINE L1 -4799 1597 667 386 273 70 45 chr6 175752275 175752674 -13526880 - L1M4 LINE L1 -2184 3962 3554 319 335 107 24 chr6 175752700 175752990 -13526564 - L1M4 LINE L1 -3723 2423 2110 369 288 68 30 chr6 175753159 175753291 -13526263 - HAL1b LINE L1 -415 933 797 364 309 110 41 chr6 175753601 175753750 -13525804 - HAL1b LINE L1 -698 650 513 1718 131 116 0 chr6 175753750 175754018 -13525536 + AluSq SINE Alu 4 302 -11 364 309 110 41 chr6 175754018 175754285 -13525269 - HAL1b LINE L1 -835 513 205 21 36 0 0 chr6 175754309 175754337 -13525217 + AT_rich Low_complexity Low_complexity 1 28 0 2115 129 20 0 chr6 175754408 175754710 -13524844 - AluSx SINE Alu -2 310 3 22 35 0 0 chr6 175755726 175755755 -13523799 + AT_rich Low_complexity Low_complexity 1 29 0 2471 225 75 42 chr6 175756882 175756996 -13522558 + L1ME1 LINE L1 5359 5468 -698 2313 108 0 3 chr6 175756996 175757293 -13522261 + AluSq SINE Alu 1 296 -17 2471 225 75 42 chr6 175757293 175757889 -13521665 + L1ME1 LINE L1 5468 6099 -67 216 67 0 0 chr6 175757889 175757919 -13521635 + (TG)n Simple_repeat Simple_repeat 2 31 0 2471 225 75 42 chr6 175757919 175757985 -13521569 + L1ME1 LINE L1 6099 6161 -5 5092 153 29 7 chr6 175758013 175759057 -13520497 + L1MB2 LINE L1 5102 6164 -7 321 313 16 23 chr6 175759100 175759228 -13520326 + MIR SINE MIR 20 146 -62 305 330 0 34 chr6 175759308 175759426 -13520128 - MIR SINE MIR -78 130 17 274 298 36 0 chr6 175759898 175759982 -13519572 - MIR3 SINE MIR -14 194 108 278 298 83 0 chr6 175760055 175760139 -13519415 + MIR SINE MIR 119 209 -53 199 219 0 0 chr6 175760199 175760240 -13519314 + L2 LINE L2 3256 3296 -17 255 300 92 50 chr6 175760920 175761223 -13518331 + L2 LINE L2 2642 2957 -357 410 226 36 66 chr6 175761276 175761413 -13518141 + L2 LINE L2 3179 3311 -2 1937 260 79 27 chr6 175762051 175762468 -13517086 + L1ME3 LINE L1 5452 5919 -243 2056 150 0 0 chr6 175762468 175762762 -13516792 + AluJo SINE Alu 13 306 -6 1937 260 79 27 chr6 175762762 175763017 -13516537 + L1ME3 LINE L1 5919 6159 -3 1981 102 71 17 chr6 175763017 175763338 -13516216 - AluSx SINE Alu 0 312 1 683 222 30 12 chr6 175764096 175764263 -13515291 + MIR SINE MIR 74 243 -19 610 263 39 27 chr6 175764996 175765215 -13514339 - MIR SINE MIR 0 262 31 543 281 86 0 chr6 175765250 175765460 -13514094 - L2 LINE L2 -493 2821 2594 229 333 52 0 chr6 175765554 175765650 -13513904 - L2 LINE L2 -753 2561 2461 270 164 0 55 chr6 175765930 175765985 -13513569 - L2 LINE L2 0 3313 3262 218 222 30 15 chr6 175768187 175768266 -13511288 + GA-rich Low_complexity Low_complexity 1 137 0 440 295 46 34 chr6 175769850 175770087 -13509467 - L2 LINE L2 -1 3312 3073 322 261 134 99 chr6 175772488 175773116 -13506438 + L2 LINE L2 2042 2691 -623 401 174 0 0 chr6 175773454 175773523 -13506031 + Tigger2 DNA MER2_type 1 69 -2649 * 1887 128 64 14 chr6 175773513 175773858 -13505696 + Tigger2 DNA MER2_type 2273 2634 -84 238 285 11 26 chr6 175774385 175774506 -13505048 + MIR SINE MIR 95 212 -50 1723 178 4 4 chr6 175774638 175774919 -13504635 + AluJo SINE Alu 7 287 -25 208 179 0 0 chr6 175776031 175776070 -13503484 - MER5B DNA MER1_type -138 40 2 451 146 10 10 chr6 175778907 175779003 -13500551 - MER53 DNA DNA 0 189 94 256 153 184 102 chr6 175779035 175779133 -13500421 - MER53 DNA DNA -83 106 1 510 271 56 0 chr6 175780432 175780576 -13498978 - MIR SINE MIR -87 175 24 799 174 7 0 chr6 175781883 175782027 -13497527 - L1PB1 LINE L1 -1 6150 6006 1196 144 33 0 chr6 175782027 175782242 -13497312 + MER61-int LTR ERV1 1224 1445 -6371 * 3844 140 111 10 chr6 175782237 175783031 -13496523 + MER61-int LTR ERV1 3652 4525 -3012 727 145 46 46 chr6 175783043 175783195 -13496359 + MER61-int LTR ERV1 990 1141 -4805 444 171 2 33 chr6 175783199 175783305 -13496249 + MER61-int LTR ERV1 1544 1991 -3955 410 174 264 0 chr6 175783284 175783405 -13496149 + MER61-int LTR ERV1 4520 4672 -2865 * 2023 177 98 17 chr6 175783400 175783977 -13495577 + MER61-int LTR ERV1 2357 5748 -1670 343 78 39 0 chr6 175783975 175784026 -13495528 + MER61-int LTR ERV1 5976 6028 -1177 * 1221 164 13 1 chr6 175784024 175784231 -13495323 + MER61-int LTR ERV1 669 7090 -1 5849 131 40 54 chr6 175784260 175785391 -13494163 + MER52C LTR ERV1 164 1278 0 873 278 148 19 chr6 175785553 175786014 -13493540 + MLT1E LTR MaLR 66 585 -8 193 254 14 84 chr6 175787193 175787264 -13492290 - MIR SINE MIR -58 150 85 938 129 19 0 chr6 175787887 175788042 -13491512 + MLT1C LTR MaLR 310 467 0 4335 128 74 74 chr6 175788286 175789278 -13490276 + pTR5 LTR ERV1 741 2027 -411 337 208 31 21 chr6 175789278 175789374 -13490180 + LTR30 LTR ERV1 546 642 -80 1573 87 4 4 chr6 175789377 175789606 -13489948 + pTR5 LTR ERV1 172 400 -2038 1172 243 112 65 chr6 175789657 175790193 -13489361 - MER34B LTR ERV1 0 565 5 1771 145 119 0 chr6 175790329 175790673 -13488881 - MLT1B LTR MaLR -5 385 1 3559 152 40 25 chr6 175790815 175791538 -13488016 + MER49 LTR ERV1 180 913 -10 2067 139 99 15 chr6 175791704 175792108 -13487446 - Tigger2 DNA MER2_type -8 2710 2273 402 145 0 0 chr6 175792107 175792169 -13487385 + MER8 DNA MER2_type 178 239 0 * 4531 155 43 13 chr6 175792169 175793038 -13486516 - L1MA9 LINE L1 -44 6268 5374 319 219 55 0 chr6 175793271 175793344 -13486210 - MER103 DNA DNA -79 87 11 306 324 199 0 chr6 175793609 175793890 -13485664 + L1MC4 LINE L1 7565 7901 -141 2341 103 0 0 chr6 175794372 175794757 -13484797 + AluSc SINE Alu 1 385 0 348 43 0 0 chr6 175797409 175797455 -13482099 + (CA)n Simple_repeat Simple_repeat 1 46 0 342 321 18 86 chr6 175799112 175799333 -13480221 + L1ME LINE L1 5563 5768 -353 551 98 12 0 chr6 175800018 175800100 -13479454 - AluSg/x SINE Alu -15 294 212 215 216 0 0 chr6 175800292 175800329 -13479225 + L2 LINE L2 3216 3252 -20 351 226 62 27 chr6 175802076 175802222 -13477332 - L1MEc LINE L1 -3199 3016 2866 2406 105 0 3 chr6 175802261 175802628 -13476926 + AluSx SINE Alu 1 366 0 667 278 83 21 chr6 175802847 175803368 -13476186 - L1MEc LINE L1 -3643 2572 2061 849 213 51 0 chr6 175803565 175803686 -13475868 + MER6B DNA MER2_type 1 137 -728 2442 56 7 23 chr6 175803686 175803972 -13475582 + AluY SINE Alu 1 283 -28 441 0 0 0 chr6 175803972 175804021 -13475533 + (CATAA)n Simple_repeat Simple_repeat 2 50 0 2442 56 7 23 chr6 175804021 175804037 -13475517 + AluY SINE Alu 283 298 -13 849 213 51 0 chr6 175804037 175804112 -13475442 + MER6B DNA MER2_type 137 207 -3 290 318 78 0 chr6 175804159 175804313 -13475241 - HAL1 LINE L1 -1051 1456 1291 363 221 243 0 chr6 175804341 175804477 -13475077 + HAL1 LINE L1 2217 2385 -122 2268 113 0 0 chr6 175804523 175804816 -13474738 - AluSx SINE Alu -19 293 1 2115 148 3 0 chr6 175805723 175806034 -13473520 + AluSx SINE Alu 1 312 0 2689 47 0 0 chr6 175808436 175808736 -13470818 - AluY SINE Alu -11 300 1 911 278 70 10 chr6 175810095 175810397 -13469157 + MER77 LTR ERV1 279 598 -7 21 0 0 0 chr6 175814556 175814577 -13464977 + AT_rich Low_complexity Low_complexity 1 21 0 2293 104 0 22 chr6 175815379 175815696 -13463858 + AluSq SINE Alu 4 313 0 3695 208 20 81 chr6 175819411 175820442 -13459112 + LTR5 LTR ERVK 1 969 0 2262 94 7 7 chr6 175820743 175821040 -13458514 + AluSq SINE Alu 1 297 -16 3894 164 47 42 chr6 175821204 175822183 -13457371 + MER11C LTR ERVK 1 1071 0 2509 58 0 29 chr6 175822207 175822517 -13457037 - AluY SINE Alu -10 301 1 513 194 10 0 chr6 175826513 175826616 -13452938 - MER46C DNA MER2_type -134 204 101 344 266 25 0 chr6 175828018 175828097 -13451457 + L2 LINE L2 3232 3312 -1 221 194 0 16 chr6 175828193 175828255 -13451299 + (TG)n Simple_repeat Simple_repeat 2 62 0 506 157 113 43 chr6 175828779 175828894 -13450660 + FLAM_C SINE Alu 1 123 -20 387 0 0 0 chr6 175835244 175835287 -13444267 + (CA)n Simple_repeat Simple_repeat 1 43 0 23 0 0 0 chr6 175835354 175835377 -13444177 + AT_rich Low_complexity Low_complexity 1 23 0 625 278 95 51 chr6 175835795 175836473 -13443081 - L2 LINE L2 -50 3263 2563 2080 98 14 37 chr6 175836900 175837043 -13442511 + AluSx SINE Alu 1 135 -177 2397 81 0 13 chr6 175837043 175837351 -13442203 + AluSg SINE Alu 6 309 -1 2080 98 14 37 chr6 175837351 175837503 -13442051 + AluSx SINE Alu 135 289 -23 294 29 0 0 chr6 175837503 175837538 -13442016 + (TA)n Simple_repeat Simple_repeat 2 36 0 * 330 26 0 0 chr6 175837537 175837576 -13441978 + (CA)n Simple_repeat Simple_repeat 2 40 0 197 224 0 20 chr6 175838027 175838076 -13441478 + MER5B DNA MER1_type 73 120 -58 256 284 25 0 chr6 175838284 175838365 -13441189 - MIR3 SINE MIR -34 174 92 22 0 0 0 chr6 175839659 175839681 -13439873 + AT_rich Low_complexity Low_complexity 1 22 0 2440 77 0 3 chr6 175840016 175840313 -13439241 + AluSc SINE Alu 1 296 -13 2530 82 0 0 chr6 175840881 175841184 -13438370 + AluSg SINE Alu 1 303 -7 708 147 16 39 chr6 175842045 175842174 -13437380 + FLAM_A SINE Alu 1 126 -7 212 200 14 0 chr6 175842521 175842591 -13436963 + (CA)n Simple_repeat Simple_repeat 1 71 0 486 261 136 52 chr6 175843519 175843791 -13435763 - L2 LINE L2 -355 2959 2665 1190 142 202 32 chr6 175843792 175844074 -13435480 - MER44D DNA MER2_type 0 609 10 21 0 0 0 chr6 175844861 175844882 -13434672 + AT_rich Low_complexity Low_complexity 1 21 0 235 327 0 56 chr6 175847009 175847116 -13432438 - MIR SINE MIR 0 262 162 423 244 221 31 chr6 175847231 175847485 -13432069 + L1ME3A LINE L1 5864 6165 -5 352 299 153 0 chr6 175847552 175847689 -13431865 - MIR SINE MIR -20 242 85 3137 189 32 29 chr6 175848615 175849307 -13430247 + MER72 LTR ERV1 1 694 -28 1194 186 14 68 chr6 175849334 175849629 -13429925 + AluJo SINE Alu 1 279 -33 389 252 73 8 chr6 175849629 175849752 -13429802 + L1MB4 LINE L1 6050 6180 0 24 0 0 0 chr6 175849906 175849930 -13429624 + AT_rich Low_complexity Low_complexity 1 24 0 2308 76 20 0 chr6 175849932 175850234 -13429320 - L1PA6 LINE L1 -6 6148 5841 7081 54 4 0 chr6 175850234 175851135 -13428419 - L1PA6 LINE L1 -969 5177 4273 1289 169 37 12 chr6 175851145 175851387 -13428167 - AluJo SINE Alu -26 286 39 1437 155 45 31 chr6 175851387 175851677 -13427877 - AluJb SINE Alu -18 294 1 1138 217 131 41 chr6 175851793 175852345 -13427209 + LTR48B LTR ERV1 1 644 0 369 256 33 0 chr6 175852923 175853013 -13426541 + MER82 DNA MER2_type 1 93 -560 2308 179 61 33 chr6 175853035 175853544 -13426010 + LTR26B LTR ERV1 2 524 -7 247 301 68 19 chr6 175853563 175853666 -13425888 - MIR SINE MIR -77 185 78 665 260 45 15 chr6 175853900 175854100 -13425454 + MER82 DNA MER2_type 447 652 -1 1199 147 171 12 chr6 175857749 175857994 -13421560 + L1MB3 LINE L1 5900 6183 0 227 56 56 0 chr6 175858910 175858946 -13420608 + GA-rich Low_complexity Low_complexity 3 40 0 1461 112 14 19 chr6 175861739 175861954 -13417600 - L1PA8A LINE L1 -9 6122 5909 189 274 134 49 chr6 175863174 175863338 -13416216 + MIR3 SINE MIR 27 204 -4 552 267 107 19 chr6 175863918 175863946 -13415608 - MIR SINE MIR -37 225 201 2249 144 3 6 chr6 175863946 175864294 -13415260 + MER7A DNA MER2_type 1 345 -1 552 267 107 19 chr6 175864294 175864471 -13415083 - MIR SINE MIR -61 201 2 217 250 0 0 chr6 175864489 175864545 -13415009 + T-rich Low_complexity Low_complexity 1 56 0 410 252 31 16 chr6 175865296 175865423 -13414131 + MLT1J2 LTR MaLR 1 129 -321 439 196 38 92 chr6 175865460 175865645 -13413909 + MLT1J2 LTR MaLR 239 421 -29 202 333 27 45 chr6 175866013 175866124 -13413430 - L3 LINE CR1 -12 1565 1457 241 338 38 0 chr6 175866457 175866537 -13413017 - MIR SINE MIR -166 96 14 252 269 0 0 chr6 175866566 175866633 -13412921 + T-rich Low_complexity Low_complexity 1 67 0 284 244 214 38 chr6 175866701 175866832 -13412722 - L3 LINE CR1 -802 775 622 216 294 61 51 chr6 175867135 175867349 -13412205 + L2 LINE L2 2674 2889 -425 1477 195 3 0 chr6 175869930 175870222 -13409332 + AluJb SINE Alu 14 306 -6 302 247 136 0 chr6 175871555 175871636 -13407918 - L2 LINE L2 -3 3269 3178 206 313 12 38 chr6 175871622 175871702 -13407852 - MIR SINE MIR -171 91 14 * 1203 207 60 14 chr6 175871744 175872029 -13407525 + L1MB7 LINE L1 5871 6168 -16 1740 145 3 57 chr6 175872212 175872530 -13407024 + AluSx SINE Alu 1 301 -11 1788 148 16 0 chr6 175874073 175874378 -13405176 + AluSx SINE Alu 1 310 -2 25 0 0 0 chr6 175874426 175874451 -13405103 + AT_rich Low_complexity Low_complexity 1 25 0 2174 160 16 10 chr6 175874906 175875294 -13404260 + MLT1B LTR MaLR 1 390 0 199 250 36 36 chr6 175876550 175876606 -13402948 + MIR SINE MIR 48 103 -159 396 341 40 28 chr6 175876776 175876952 -13402602 + L2 LINE L2 3136 3313 0 22 56 0 0 chr6 175877778 175877814 -13401740 + AT_rich Low_complexity Low_complexity 1 36 0 1360 242 87 148 chr6 175878963 175880763 -13398791 + L2 LINE L2 1569 3301 -12 4016 145 33 19 chr6 175880945 175881311 -13398243 - L1PB4 LINE L1 0 6872 6513 252 0 0 0 chr6 175881311 175881339 -13398215 + (TG)n Simple_repeat Simple_repeat 2 29 0 4016 145 33 19 chr6 175881339 175881691 -13397863 - L1PB4 LINE L1 -359 6513 6144 3040 36 3 0 chr6 175881749 175882108 -13397446 - L1PA4 LINE L1 -3 6152 5793 12486 241 42 19 chr6 175882108 175884021 -13395533 - L1PB4 LINE L1 -722 6150 4284 257 0 30 0 chr6 175884021 175884054 -13395500 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 12486 241 42 19 chr6 175884054 175887052 -13392502 - L1PB4 LINE L1 -2588 4284 926 2456 153 57 0 chr6 175887258 175887663 -13391891 - MSTA LTR MaLR 0 428 1 706 224 92 11 chr6 175889935 175890109 -13389445 - MER58C DNA MER1_type -15 200 13 2217 96 0 19 chr6 175890368 175890680 -13388874 + AluSx SINE Alu 1 306 -6 3243 240 42 38 chr6 175891098 175891542 -13388012 - L1ME2 LINE L1 -9 6155 5714 1872 152 3 0 chr6 175891542 175891886 -13387668 - AluSx SINE Alu 0 312 1 3243 240 42 38 chr6 175891886 175892223 -13387331 - L1ME2 LINE L1 -450 5714 5380 2049 113 7 0 chr6 175892223 175892525 -13387029 - AluY SINE Alu -7 304 1 3243 240 42 38 chr6 175892525 175893115 -13386439 - L1ME2 LINE L1 -784 5380 4771 405 125 0 0 chr6 175893115 175893171 -13386383 - AluS SINE Alu -254 57 2 305 191 0 8 chr6 175893171 175893234 -13386320 - L1ME2 LINE L1 -1373 4773 4713 411 193 11 11 chr6 175893628 175893716 -13385838 + MIR SINE MIR 93 180 -82 225 0 0 0 chr6 175893727 175893752 -13385802 + (A)n Simple_repeat Simple_repeat 1 25 0 203 138 0 155 chr6 175896545 175896603 -13382951 - L2 LINE L2 -2816 498 450 327 242 91 10 chr6 175897767 175897866 -13381688 - MIR SINE MIR -102 160 54 1198 175 20 0 chr6 175899013 175899213 -13380341 - MER20 DNA MER1_type 0 219 16 210 250 0 36 chr6 175899576 175899632 -13379922 + CT-rich Low_complexity Low_complexity 3 56 0 1737 212 32 27 chr6 175900651 175901061 -13378493 + L1MC4 LINE L1 6459 6870 -1172 488 286 32 43 chr6 175901190 175901367 -13378187 - L2 LINE L2 -1004 2310 2136 1574 117 0 9 chr6 175901367 175901590 -13377964 + AluSg/x SINE Alu 84 304 -6 488 286 32 43 chr6 175901590 175901692 -13377862 - L2 LINE L2 -1178 2136 2034 251 289 96 44 chr6 175902375 175902510 -13377044 + MIR3 SINE MIR 46 187 -21 946 277 84 74 chr6 175902697 175903174 -13376380 + L1ME4a LINE L1 5312 5803 -318 1653 151 55 4 chr6 175903174 175903478 -13376076 + AluJb SINE Alu 1 318 0 946 277 84 74 chr6 175903478 175903727 -13375827 + L1ME4a LINE L1 5803 6048 -73 3278 150 17 90 chr6 175903838 175904001 -13375553 - LTR8 LTR ERV1 0 691 518 2329 60 0 3 chr6 175904001 175904321 -13375233 - AluY SINE Alu 0 319 1 3278 150 17 90 chr6 175904321 175904901 -13374653 - LTR8 LTR ERV1 -173 518 1 2149 128 3 0 chr6 175905041 175905339 -13374215 - AluSx SINE Alu -13 299 1 885 51 0 77 chr6 175905638 175905833 -13373721 + (TCC)n Simple_repeat Simple_repeat 1 180 0 451 114 45 38 chr6 175905837 175905969 -13373585 + CT-rich Low_complexity Low_complexity 3 135 0 1850 133 3 48 chr6 175906591 175906905 -13372649 + AluJo SINE Alu 1 301 0 2219 114 0 0 chr6 175906913 175907221 -13372333 + AluSg SINE Alu 1 308 -2 238 273 182 0 chr6 175907956 175908055 -13371499 - L2 LINE L2 -9 3304 3188 1762 178 41 51 chr6 175908056 175908450 -13371104 - MLT1B LTR MaLR 0 390 1 1538 159 74 19 chr6 175908477 175908748 -13370806 + AluJo SINE Alu 1 286 -26 25 0 0 0 chr6 175908749 175908774 -13370780 + AT_rich Low_complexity Low_complexity 1 25 0 1090 184 5 19 chr6 175908810 175909017 -13370537 + AluJo SINE Alu 96 299 -13 1208 258 25 6 chr6 175909474 175909792 -13369762 + MER33 DNA MER1_type 1 324 0 2873 279 145 33 chr6 175909882 175912367 -13367187 + L2 LINE L2 518 3273 -40 2211 92 10 3 chr6 175912908 175913200 -13366354 + AluSx SINE Alu 1 294 -18 516 267 61 0 chr6 175915439 175915604 -13363950 + MIR SINE MIR 81 255 -7 324 0 0 0 chr6 175915657 175915693 -13363861 + (CA)n Simple_repeat Simple_repeat 1 36 0 417 192 88 8 chr6 175917621 175917746 -13361808 + L2 LINE L2 3119 3253 -60 272 370 102 35 chr6 175917776 175918414 -13361140 + L2 LINE L2 1640 2320 -994 1298 114 0 0 chr6 175918470 175918646 -13360908 - AluSg/x SINE Alu 0 312 137 607 281 46 28 chr6 175918816 175919143 -13360411 + L2 LINE L2 1304 1636 -1678 2409 95 0 0 chr6 175920228 175920524 -13359030 + AluSx SINE Alu 1 296 -16 410 268 135 28 chr6 175920546 175920832 -13358722 - MLT1G3 LTR MaLR -42 500 156 609 270 106 18 chr6 175921237 175921511 -13358043 - L1M3b LINE L1 -4862 1419 1122 669 331 74 27 chr6 175921778 175922264 -13357290 - L1M3b LINE L1 -5764 517 9 532 221 36 0 chr6 175922818 175922958 -13356596 - LTR16C LTR ERVL 0 491 347 1784 153 38 0 chr6 175923353 175923666 -13355888 + L1MB3 LINE L1 5857 6181 -2 1116 228 92 7 chr6 175923917 175924211 -13355343 - MER58B DNA MER1_type -20 321 3 506 304 39 35 chr6 175924222 175924482 -13355072 - MARNA DNA Mariner -155 431 171 2197 164 6 6 chr6 175925436 175925801 -13353753 + MLT1A1 LTR MaLR 1 365 0 525 113 0 12 chr6 175927139 175927219 -13352335 - MADE1 DNA Mariner -1 79 1 324 0 0 0 chr6 175927376 175927412 -13352142 + (TA)n Simple_repeat Simple_repeat 1 36 0 1085 254 118 47 chr6 175927603 175928154 -13351400 - L1ME3A LINE L1 -220 5950 5361 577 158 109 77 chr6 175928155 175928338 -13351216 + MLT1C LTR MaLR 6 194 -273 612 101 0 0 chr6 175928340 175928419 -13351135 + THE1B LTR MaLR 1 79 -285 419 169 0 0 chr6 175928417 175928482 -13351072 + THE1C LTR MaLR 304 368 -7 * 11741 93 10 1 chr6 175928483 175930046 -13349508 + THE1B-int LTR MaLR 3 1580 0 1934 147 38 22 chr6 175930046 175930366 -13349188 + THE1B LTR MaLR 1 325 -39 528 248 29 7 chr6 175930385 175930522 -13349032 + MLT1C LTR MaLR 226 365 -102 354 215 75 0 chr6 175930700 175930793 -13348761 + LTR16C LTR ERVL 386 485 -6 631 241 63 33 chr6 175930807 175931139 -13348415 - L1ME3A LINE L1 -1488 4658 4317 502 167 20 0 chr6 175931225 175931327 -13348227 - Charlie4 DNA MER1_type -34 1927 1824 2215 136 19 27 chr6 175931332 175931699 -13347855 - THE1B LTR MaLR 0 364 1 198 233 0 0 chr6 175932734 175932777 -13346777 - L2 LINE L2 -14 3258 3216 2150 125 20 0 chr6 175933254 175933559 -13345995 - AluSx SINE Alu -1 311 1 803 239 122 13 chr6 175933709 175933946 -13345608 - LTR55 LTR ERV -49 499 237 1126 225 43 84 chr6 175933946 175934353 -13345201 + MLT2B1 LTR ERVL 1 479 -41 2308 100 0 7 chr6 175934373 175934664 -13344890 + AluSx SINE Alu 2 290 -22 663 102 70 9 chr6 175934664 175935109 -13344445 + (TA)n Simple_repeat Simple_repeat 1 472 0 642 100 81 2 chr6 175935145 175935664 -13343890 + (TA)n Simple_repeat Simple_repeat 1 559 0 5691 129 55 2 chr6 175935675 175936574 -13342980 + Tigger3b DNA MER2_type 1 946 -285 351 159 232 0 chr6 175936596 175936665 -13342889 + Tigger3b DNA MER2_type 1148 1232 0 1075 178 27 9 chr6 175936759 175936978 -13342576 - LTR55 LTR ERV -324 224 2 371 243 166 6 chr6 175937470 175937639 -13341915 - L1ME4a LINE L1 -189 5932 5737 3885 167 30 11 chr6 175938024 175938747 -13340807 + L1MB3 LINE L1 5432 6168 -15 22 0 0 0 chr6 175938754 175938776 -13340778 + AT_rich Low_complexity Low_complexity 1 22 0 237 272 165 10 chr6 175938871 175938974 -13340580 + L2 LINE L2 3153 3271 -1 940 195 146 68 chr6 175939022 175939565 -13339989 + LTR50 LTR ERVL 1 676 -119 668 326 12 4 chr6 175941098 175941343 -13338211 + MIR SINE MIR 15 261 -1 292 269 64 0 chr6 175941493 175941571 -13337983 - MIR SINE MIR -62 146 64 223 241 63 13 chr6 175942489 175942568 -13336986 + MIR SINE MIR 60 142 -66 337 326 34 20 chr6 175942588 175942735 -13336819 + MLT1K LTR MaLR 2 150 -438 2159 234 43 24 chr6 175942853 175943435 -13336119 - MLT1E LTR MaLR 0 593 1 389 177 6 9 chr6 175944371 175944465 -13335089 - L1MC3 LINE L1 -6 7985 7710 2066 221 121 31 chr6 175945096 175945317 -13334237 + L1MC3 LINE L1 4751 4951 -1195 1758 161 17 17 chr6 175945317 175945608 -13333946 + AluJb SINE Alu 5 295 -17 2066 221 121 31 chr6 175945608 175946646 -13332908 + L1MC3 LINE L1 4951 5403 -743 905 233 80 82 chr6 175946263 175946700 -13332854 + L1MB8 LINE L1 5743 6178 0 * 195 303 45 0 chr6 175946918 175946984 -13332570 + MIR3 SINE MIR 101 169 -39 812 167 0 0 chr6 175947564 175947690 -13331864 + FLAM_C SINE Alu 6 131 -12 2084 113 0 0 chr6 175947825 175948138 -13331416 + AluSx SINE Alu 4 312 0 319 255 138 0 chr6 175948138 175948232 -13331322 + MIR SINE MIR 153 259 -3 205 295 158 0 chr6 175949252 175949347 -13330207 - L2 LINE L2 -4 3309 3200 186 365 14 0 chr6 175949503 175949577 -13329977 - L2 LINE L2 -559 2755 2681 198 308 121 61 chr6 175949858 175950364 -13329190 - L2 LINE L2 -656 2658 2123 690 296 25 5 chr6 175950376 175950579 -13328975 - LTR16A LTR ERVL 0 450 244 730 234 24 53 chr6 175950590 175950799 -13328755 - MER63A DNA MER1_type -2 208 6 323 348 28 34 chr6 175950815 175951040 -13328514 - LTR16A LTR ERVL -227 230 1 1718 214 93 3 chr6 175951153 175951509 -13328045 + MSTD LTR MaLR 1 388 -8 5289 221 52 41 chr6 175951518 175952827 -13326727 + MSTD-int LTR MaLR 2 1324 -411 1055 167 9 81 chr6 175952827 175953037 -13326517 + MSTD LTR MaLR 202 396 0 380 315 20 64 chr6 175953072 175953323 -13326231 - ERVL LTR ERVL -426 5338 5099 181 395 0 9 chr6 175954787 175954896 -13324658 - L2 LINE L2 -317 2955 2848 1426 186 55 73 chr6 175955359 175955810 -13323744 + LTR23-int LTR ERV1 274 716 -4407 859 144 0 0 chr6 175956052 175956170 -13323384 + FLAM_C SINE Alu 1 118 -15 642 117 42 25 chr6 175956389 175956509 -13323045 + LTR49 LTR ERV1 474 595 0 1554 153 24 16 chr6 175956511 175956765 -13322789 + LTR49-int LTR ERV1 1 256 -6075 2246 173 94 30 chr6 175956768 175956857 -13322697 + LTR49-int LTR ERV1 886 968 -5363 267 31 0 0 chr6 175956857 175956889 -13322665 + (TA)n Simple_repeat Simple_repeat 2 33 0 2246 173 94 30 chr6 175956889 175956939 -13322615 + LTR49-int LTR ERV1 968 1013 -5318 2061 117 0 7 chr6 175956939 175957238 -13322316 - AluSx SINE Alu -15 297 1 2246 173 94 30 chr6 175957238 175957564 -13321990 + LTR49-int LTR ERV1 1013 1382 -4949 1499 146 20 54 chr6 175957680 175957930 -13321624 + LTR49-int LTR ERV1 1374 1614 -4717 1643 176 17 0 chr6 175957930 175958231 -13321323 + AluJo SINE Alu 1 306 -6 1499 146 20 54 chr6 175958231 175958274 -13321280 + LTR49-int LTR ERV1 1614 1657 -4674 1465 187 29 15 chr6 175958272 175958545 -13321009 + LTR49-int LTR ERV1 1880 2156 -4175 * 485 158 16 9 chr6 175958545 175958653 -13320901 + LTR24B LTR ERV1 357 569 -7 479 174 130 26 chr6 175961101 175961216 -13318338 - Charlie1 DNA MER1_type -4 2757 2631 * 816 273 36 0 chr6 175961211 175961431 -13318123 - Charlie1 DNA MER1_type -2522 239 12 1104 183 5 0 chr6 175961456 175961658 -13317896 + AluJo SINE Alu 85 287 -25 22 0 0 0 chr6 175961671 175961693 -13317861 + AT_rich Low_complexity Low_complexity 1 22 0 184 246 18 70 chr6 175961695 175961752 -13317802 - L2 LINE L2 -14 3258 3205 235 340 30 40 chr6 175962013 175962113 -13317441 + MIR SINE MIR 20 118 -90 437 329 51 0 chr6 175962385 175962522 -13317032 + MIR SINE MIR 47 190 -72 959 163 14 8 chr6 175963038 175963394 -13316160 + GA-rich Low_complexity Low_complexity 1 358 0 278 257 40 10 chr6 175963800 175963901 -13315653 - MLT1L LTR MaLR -4 611 508 367 246 57 25 chr6 175964052 175964174 -13315380 - MLT1L LTR MaLR -348 267 142 1065 227 19 0 chr6 175964237 175964453 -13315101 + MER58A DNA MER1_type 1 220 -4 225 279 111 5 chr6 175964461 175964575 -13314979 - MIR SINE MIR -73 135 5 2114 108 20 0 chr6 175964874 175965179 -13314375 - AluSx SINE Alu -1 311 1 1298 176 12 46 chr6 175965403 175965861 -13313693 + MLT1F LTR MaLR 1 566 -1 248 213 0 0 chr6 175966076 175966123 -13313431 - MIR SINE MIR 0 262 216 200 181 385 48 chr6 175966378 175966461 -13313093 - L2 LINE L2 -1 3312 3202 199 140 193 0 chr6 175966505 175966562 -13312992 + L2 LINE L2 2442 2509 -805 1730 165 134 36 chr6 175966658 175967076 -13312478 - MLT1C LTR MaLR -8 459 1 235 267 132 87 chr6 175967076 175967342 -13312212 + L2 LINE L2 2606 2883 -431 344 311 85 63 chr6 175967408 175967678 -13311876 + L2 LINE L2 2941 3216 -56 1794 178 95 9 chr6 175967713 175968061 -13311493 - MSTD LTR MaLR 0 396 19 1335 264 95 63 chr6 175968715 175969283 -13310271 + MLT1G1 LTR MaLR 1 586 -9 230 224 0 0 chr6 175969655 175969704 -13309850 - MLT1L LTR MaLR 0 615 567 234 211 200 42 chr6 175969718 175969813 -13309741 - LTR41 LTR ERVL -7 766 657 510 239 56 14 chr6 175970018 175970160 -13309394 - LTR41 LTR ERVL -618 155 8 291 281 35 26 chr6 175970365 175970479 -13309075 - MLT1L LTR MaLR -299 316 202 607 297 22 11 chr6 175970870 175971052 -13308502 + MIR SINE MIR 17 200 -62 209 303 197 0 chr6 175971216 175971292 -13308262 + L2 LINE L2 3150 3240 -32 244 256 12 73 chr6 175971338 175971420 -13308134 + L2 LINE L2 2908 2984 -329 648 231 119 22 chr6 175971478 175971747 -13307807 - L1MC4 LINE L1 0 8042 7748 2143 165 80 16 chr6 175972173 175972610 -13306944 - MLT1C LTR MaLR -2 465 1 1129 143 249 15 chr6 175972715 175972988 -13306566 + MER1B DNA MER1_type 1 337 0 352 265 55 29 chr6 175973015 175973171 -13306383 - L1MC4 LINE L1 -191 7594 7451 242 231 19 0 chr6 175973198 175973250 -13306304 - MER5A DNA MER1_type -3 186 134 263 211 19 0 chr6 175973256 175973308 -13306246 - MER5A DNA MER1_type -3 186 134 749 254 23 11 chr6 175973320 175973497 -13306057 - MER5A DNA MER1_type -10 179 1 1067 224 9 5 chr6 175973505 175973719 -13305835 - MER58A DNA MER1_type 0 224 10 1189 241 50 35 chr6 175973969 175974372 -13305182 + LTR37A LTR ERV1 18 426 0 592 308 31 8 chr6 175974373 175974633 -13304921 - L1MC4 LINE L1 -605 7437 7172 2272 83 0 0 chr6 175974642 175974944 -13304610 - AluY SINE Alu -9 302 1 806 251 69 28 chr6 175975033 175975280 -13304274 + MIR SINE MIR 6 262 0 453 263 190 0 chr6 175975298 175975477 -13304077 + MIR SINE MIR 49 261 -1 22 56 0 0 chr6 175976162 175976198 -13303356 + GC_rich Low_complexity Low_complexity 1 36 0 40 79 0 0 chr6 175976363 175976452 -13303102 + GC_rich Low_complexity Low_complexity 1 89 0 24 0 0 0 chr6 175977086 175977110 -13302444 + AT_rich Low_complexity Low_complexity 1 24 0 1587 168 10 13 chr6 175977946 175978256 -13301298 + AluJb SINE Alu 3 311 -1 1397 199 0 31 chr6 175978807 175979098 -13300456 - AluJo SINE Alu -24 288 7 794 198 70 137 chr6 175981195 175981722 -13297832 - L1ME LINE L1 -559 5605 5103 1015 161 22 81 chr6 175981733 175981956 -13297598 - MER20 DNA MER1_type -9 210 1 411 211 0 35 chr6 175981956 175982070 -13297484 - L1ME LINE L1 -1064 5082 4973 2752 164 96 10 chr6 175982071 175982582 -13296972 - MER21A LTR ERV1 0 931 377 1028 168 101 25 chr6 175982588 175982826 -13296728 - MER21A LTR ERV1 -667 264 9 451 127 57 13 chr6 175982826 175982983 -13296571 + (TA)n Simple_repeat Simple_repeat 1 164 0 305 279 82 69 chr6 175983021 175983641 -13295913 - L1ME LINE L1 -2373 3773 3146 218 176 137 0 chr6 175984736 175984787 -13294767 + MIR3 SINE MIR 99 156 -52 214 309 93 0 chr6 175984853 175984950 -13294604 + MIR SINE MIR 47 152 -110 320 278 108 31 chr6 175986842 175987036 -13292518 - L2 LINE L2 -377 2937 2729 1988 59 48 7 chr6 175987058 175987387 -13292167 + AluY SINE Alu 1 340 0 192 330 10 20 chr6 175987509 175987609 -13291945 + MIR SINE MIR 23 121 -141 447 201 0 0 chr6 175988390 175988524 -13291030 + (TG)n Simple_repeat Simple_repeat 2 135 0 2333 180 77 59 chr6 175991341 175991902 -13287652 + MER7C DNA MER2_type 22 592 -10 1300 132 174 8 chr6 175991915 175992173 -13287381 + MER44D DNA MER2_type 5 575 -34 196 281 156 21 chr6 175992455 175992551 -13287003 + MIR SINE MIR 15 123 -139 1997 111 0 26 chr6 175993380 175993550 -13286004 - AluSx SINE Alu -13 299 139 261 0 0 0 chr6 175993550 175993579 -13285975 + (TG)n Simple_repeat Simple_repeat 2 30 0 1997 111 0 26 chr6 175993579 175993715 -13285839 - AluSx SINE Alu -173 139 1 2139 106 0 0 chr6 175994545 175994837 -13284717 - AluSg SINE Alu -18 292 1 2427 68 7 0 chr6 175995381 175995689 -13283865 + AluY SINE Alu 1 310 -1 481 229 107 29 chr6 175995908 175996048 -13283506 + L2 LINE L2 3163 3313 0 701 173 16 0 chr6 175996750 175996877 -13282677 - FLAM_C SINE Alu -4 129 1 2741 80 42 3 chr6 175997375 175997736 -13281818 + THE1C LTR MaLR 1 375 0 2255 120 0 0 chr6 175997774 175998075 -13281479 - AluSg SINE Alu -9 301 1 237 206 88 15 chr6 175999165 175999233 -13280321 - L2 LINE L2 -1382 1932 1860 4980 149 45 13 chr6 175999378 175999746 -13279808 - L1PB4 LINE L1 0 6213 5858 336 24 0 0 chr6 175999746 175999787 -13279767 + (CA)n Simple_repeat Simple_repeat 1 41 0 4980 149 45 13 chr6 175999787 176001004 -13278550 - L1PB4 LINE L1 -355 5858 4579 * 6107 212 32 27 chr6 176001002 176002691 -13276863 - L1PB4 LINE L1 -2411 3792 2096 1481 230 38 139 chr6 176002682 176003816 -13275738 - L1PB4 LINE L1 -4713 1490 380 * 391 300 37 65 chr6 176003953 176004276 -13275278 - L1PB4 LINE L1 -5834 370 57 328 356 6 6 chr6 176004326 176004500 -13275054 - L1PBa LINE L1 -5258 1605 1432 355 412 50 20 chr6 176004601 176004958 -13274596 - L1PBa LINE L1 -6474 389 22 186 133 0 0 chr6 176005418 176005448 -13274106 + (TATAG)n Simple_repeat Simple_repeat 4 33 0 395 314 92 25 chr6 176005982 176006133 -13273421 - MIR SINE MIR 0 262 88 2131 156 127 5 chr6 176006133 176006536 -13273018 - LTR47A LTR ERVL 0 452 1 395 314 92 25 chr6 176006536 176006623 -13272931 - MIR SINE MIR -174 88 8 374 215 121 82 chr6 176007187 176007303 -13272251 + L1MC/D LINE L1 5279 5389 -2419 1967 135 125 10 chr6 176007303 176007687 -13271867 - MSTA LTR MaLR 0 428 1 374 215 121 82 chr6 176007687 176007826 -13271728 + L1MC/D LINE L1 5389 5544 -2264 2329 88 13 16 chr6 176007876 176008184 -13271370 - AluSx SINE Alu -5 307 1 3653 128 2 9 chr6 176008211 176008742 -13270812 + MER1A DNA MER1_type 1 527 0 2428 167 7 37 chr6 176009024 176009256 -13270298 - Tigger2a DNA MER2_type -2274 434 220 1999 148 0 10 chr6 176009256 176009554 -13270000 + AluJb SINE Alu 1 295 -17 2428 167 7 37 chr6 176009554 176009758 -13269796 - Tigger2a DNA MER2_type -2488 220 11 29 60 0 0 chr6 176009823 176009873 -13269681 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr6 176010039 176010067 -13269487 + AT_rich Low_complexity Low_complexity 1 28 0 579 285 104 45 chr6 176010783 176011137 -13268417 - L2 LINE L2 -1 3312 2938 1668 185 99 11 chr6 176011925 176012365 -13267189 - LTR45B LTR ERV1 0 525 6 22 0 0 0 chr6 176014056 176014078 -13265476 + AT_rich Low_complexity Low_complexity 1 22 0 1026 278 85 23 chr6 176014168 176014700 -13264854 - L1ME2 LINE L1 -295 5869 5305 396 247 183 75 chr6 176014901 176015116 -13264438 - L1ME2 LINE L1 -879 5267 5076 1458 110 60 5 chr6 176015116 176015334 -13264220 + MER30 DNA MER1_type 1 230 0 396 247 183 75 chr6 176015334 176015556 -13263998 - L1ME2 LINE L1 -1070 5076 4783 259 281 103 55 chr6 176015665 176015918 -13263636 - L2 LINE L2 -513 2801 2537 952 204 4 34 chr6 176018603 176018838 -13260716 - L1MA8 LINE L1 -31 6260 6033 2157 164 71 0 chr6 176019469 176019847 -13259707 - MSTA LTR MaLR -7 421 17 1215 96 0 45 chr6 176019855 176019911 -13259643 - AluSx SINE Alu -143 169 112 267 93 0 0 chr6 176019911 176019954 -13259600 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1215 96 0 45 chr6 176019954 176020074 -13259480 - AluSx SINE Alu -200 112 1 746 217 0 4 chr6 176020341 176020614 -13258940 + (CTG)n Simple_repeat Simple_repeat 1 271 0 762 229 0 0 chr6 176020640 176020933 -13258621 + (CTG)n Simple_repeat Simple_repeat 1 293 0 789 208 0 0 chr6 176020961 176021139 -13258415 + (CTG)n Simple_repeat Simple_repeat 2 179 0 525 244 0 0 chr6 176021150 176021310 -13258244 + (CTG)n Simple_repeat Simple_repeat 2 161 0 765 212 0 0 chr6 176021330 176021509 -13258045 + (CTG)n Simple_repeat Simple_repeat 1 179 0 537 216 0 0 chr6 176021528 176021667 -13257887 + (CTG)n Simple_repeat Simple_repeat 2 140 0 522 261 0 0 chr6 176021720 176021896 -13257658 + (CTG)n Simple_repeat Simple_repeat 1 176 0 555 257 0 0 chr6 176021959 176022130 -13257424 + (CTG)n Simple_repeat Simple_repeat 1 171 0 219 146 0 0 chr6 176022179 176022220 -13257334 + (TTG)n Simple_repeat Simple_repeat 1 41 0 318 249 282 36 chr6 176123188 176123578 -13155976 + L2 LINE L2 48 533 -2781 2178 263 164 28 chr6 176123605 176125097 -13154457 + L2 LINE L2 1600 3311 -2 1115 119 21 52 chr6 176125240 176125408 -13154146 + MER3 DNA MER1_type 2 165 -44 2259 92 0 13 chr6 176125408 176125711 -13153843 + AluSx SINE Alu 3 301 -11 1115 119 21 52 chr6 176125711 176125735 -13153819 + MER3 DNA MER1_type 165 188 -21 660 101 138 0 chr6 176128084 176128193 -13151361 - MER41A LTR ERV1 0 554 431 1075 40 0 0 chr6 176128193 176128318 -13151236 + AluSg/x SINE Alu 172 296 -13 3040 95 20 20 chr6 176128318 176128759 -13150795 - MER41A LTR ERV1 -113 441 1 2233 114 0 0 chr6 176128786 176129084 -13150470 + AluSg SINE Alu 1 298 -12 2078 117 103 19 chr6 176129169 176129536 -13150018 - LTR14B LTR ERVK 0 608 211 275 65 22 22 chr6 176129524 176129570 -13149984 - LTR14B LTR ERVK -562 46 1 * 3882 62 15 15 chr6 176129573 176130313 -13149241 - HERVK14 LTR ERVK 0 5945 5038 331 62 0 0 chr6 176130313 176130361 -13149193 - HERV17 LTR ERV1 -8145 481 434 1124 28 49 0 chr6 176130362 176130504 -13149050 - HERV17 LTR ERV1 -3073 5553 5405 * 3350 70 5 0 chr6 176130483 176130897 -13148657 - HERV17 LTR ERV1 -4872 3754 3339 261 0 0 0 chr6 176131478 176131507 -13148047 + (TG)n Simple_repeat Simple_repeat 1 29 0 213 39 0 0 chr6 176131506 176131532 -13148022 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1417 207 70 40 chr6 176131695 176132125 -13147429 - L1MC4a LINE L1 -1601 6207 5765 6052 118 20 18 chr6 176132206 176133136 -13146418 + HSMAR2 DNA Mariner 2 933 -369 16079 116 25 6 chr6 176133136 176135484 -13144070 - Tigger1 DNA MER2_type -25 2393 3 625 253 97 4 chr6 176135511 176135748 -13143806 - L1M4 LINE L1 -2145 4001 3743 723 242 148 51 chr6 176136254 176136605 -13142949 + MER57B LTR ERV1 50 434 0 350 292 57 26 chr6 176136726 176136918 -13142636 - HAL1 LINE L1 -838 1669 1472 488 266 24 0 chr6 176136921 176137045 -13142509 + MER94 DNA DNA 2 128 -6 339 331 47 8 chr6 176137074 176137201 -13142353 - HAL1 LINE L1 -1030 1477 1346 1897 245 21 37 chr6 176137220 176137701 -13141853 + MER21B LTR ERV1 12 484 -379 705 188 16 0 chr6 176137712 176137840 -13141714 + LTR54B LTR ERV1 1 130 -368 625 186 11 17 chr6 176137844 176138021 -13141533 + CT-rich Low_complexity Low_complexity 4 179 0 208 154 0 26 chr6 176138033 176138072 -13141482 + CT-rich Low_complexity Low_complexity 3 40 0 1703 193 69 0 chr6 176138340 176138672 -13140882 + MLT1A1 LTR MaLR 10 364 -1 525 297 166 19 chr6 176138875 176139249 -13140305 - LTR67 LTR ERVL -7 550 122 1662 189 3 17 chr6 176140723 176141025 -13138529 + AluJo SINE Alu 1 298 -14 846 263 98 26 chr6 176141365 176141950 -13137604 + L1MC4 LINE L1 6336 7058 -835 334 181 0 64 chr6 176142018 176142112 -13137442 - L1PA16 LINE L1 0 6166 6079 969 136 23 40 chr6 176142125 176142301 -13137253 - THE1C LTR MaLR -2 373 201 6098 158 16 49 chr6 176142332 176144401 -13135153 - L1PB4 LINE L1 -193 5963 3846 234 234 31 16 chr6 176144394 176144458 -13135096 + L1MC5 LINE L1 7000 7064 -897 * 2576 41 0 0 chr6 176145841 176146134 -13133420 - AluY SINE Alu -18 293 1 1980 113 7 14 chr6 176146629 176146939 -13132615 + AluSg SINE Alu 1 308 0 2060 125 21 0 chr6 176148142 176148422 -13131132 + AluSx SINE Alu 1 286 -26 415 109 0 0 chr6 176148560 176148615 -13130939 + AluSq SINE Alu 105 159 -154 1306 143 83 0 chr6 176149829 176150046 -13129508 - MER46A DNA MER2_type -1 235 1 205 347 74 25 chr6 176150397 176150518 -13129036 - L3 LINE CR1 -19 1558 1432 2218 101 7 0 chr6 176152518 176152824 -13126730 + AluSg SINE Alu 1 308 -2 2198 113 0 0 chr6 176153364 176153674 -13125880 + AluSg SINE Alu 1 310 0 202 225 0 0 chr6 176154140 176154180 -13125374 + CT-rich Low_complexity Low_complexity 2 41 0 1345 152 26 79 chr6 176154718 176154814 -13124740 - MER33 DNA MER1_type -2261 324 225 1406 167 97 17 chr6 176154814 176155102 -13124452 + AluJo SINE Alu 1 311 -1 1345 152 26 79 chr6 176155102 176155347 -13124207 - MER33 DNA MER1_type -2360 225 1 303 236 146 9 chr6 176155450 176155560 -13123994 + L2 LINE L2 3189 3313 0 1833 147 43 9 chr6 176155893 176156220 -13123334 - MER44D DNA MER2_type 0 609 2 5190 172 58 61 chr6 176157220 176158235 -13121319 - L1MC1 LINE L1 0 6613 5584 2065 100 3 23 chr6 176158235 176158535 -13121019 - AluSx SINE Alu -18 294 1 5190 172 58 61 chr6 176158535 176159239 -13120315 - L1MC1 LINE L1 -1029 5584 4880 2193 213 10 7 chr6 176159239 176159643 -13119911 - Tigger7 DNA MER2_type -2075 412 8 3166 217 42 15 chr6 176159656 176160330 -13119224 - L1MC1 LINE L1 -3017 3409 2689 2712 183 39 57 chr6 176160330 176160398 -13119156 - MLT2B3 LTR ERVL 0 554 486 216 0 0 0 chr6 176160398 176160422 -13119132 + (TG)n Simple_repeat Simple_repeat 2 25 0 2712 183 39 57 chr6 176160422 176160917 -13118637 - MLT2B3 LTR ERVL -68 486 1 3166 217 42 15 chr6 176160917 176161370 -13118184 - L1MC1 LINE L1 -3737 2689 2250 415 92 31 0 chr6 176161383 176161448 -13118106 - Alu SINE Alu -8 302 236 248 288 110 0 chr6 176162343 176162416 -13117138 + MIR3 SINE MIR 121 201 -7 225 0 0 0 chr6 176162661 176162686 -13116868 + (TG)n Simple_repeat Simple_repeat 2 26 0 259 264 56 0 chr6 176163124 176163196 -13116358 - MIR SINE MIR -138 124 49 354 348 30 12 chr6 176163226 176163390 -13116164 - L1MC5 LINE L1 -281 7680 7514 1612 187 3 3 chr6 176163454 176163748 -13115806 + AluJo SINE Alu 1 294 -18 2233 99 3 3 chr6 176164899 176165212 -13114342 + AluSp SINE Alu 1 313 0 22 0 0 0 chr6 176167257 176167279 -13112275 + GC_rich Low_complexity Low_complexity 1 22 0 2168 113 0 0 chr6 176168164 176168473 -13111081 + AluSx SINE Alu 1 309 -3 2127 122 0 0 chr6 176168483 176168786 -13110768 + AluSx SINE Alu 1 303 -9 746 258 152 6 chr6 176168844 176169173 -13110381 + L1MC4 LINE L1 5602 5978 -1830 25 0 0 0 chr6 176169536 176169561 -13109993 + AT_rich Low_complexity Low_complexity 1 25 0 396 230 164 30 chr6 176169777 176169942 -13109612 - MER5A DNA MER1_type -2 187 1 2012 123 23 3 chr6 176171366 176171667 -13107887 + AluSx SINE Alu 1 307 -5 357 289 0 0 chr6 176172279 176172393 -13107161 + L1MC4 LINE L1 7116 7229 -813 324 217 94 43 chr6 176172554 176172692 -13106862 + MER103 DNA DNA 3 147 -19 1922 139 7 0 chr6 176172692 176172980 -13106574 - AluSx SINE Alu -22 290 1 328 286 103 54 chr6 176173156 176173341 -13106213 + MIR SINE MIR 39 232 -30 1337 175 50 143 chr6 176173672 176174147 -13105407 + L1MB7 LINE L1 5738 6168 -16 1986 92 0 31 chr6 176174184 176174478 -13105076 - AluY SINE Alu -26 285 1 433 218 63 23 chr6 176174595 176174785 -13104769 + L1MC4 LINE L1 7023 7229 -733 265 284 14 50 chr6 176174996 176175137 -13104417 + L1MC5 LINE L1 7305 7440 -521 1864 160 114 31 chr6 176175202 176175710 -13103844 - MER39 LTR ERV1 -1 706 1 3132 199 95 9 chr6 176175710 176176295 -13103259 - Charlie5 DNA MER1_type -6 2618 1932 2219 95 3 0 chr6 176176295 176176591 -13102963 - AluSq SINE Alu -15 298 2 3132 199 95 9 chr6 176176591 176176881 -13102673 - Charlie5 DNA MER1_type -692 1932 1668 4716 113 195 91 chr6 176176883 176178154 -13101400 - pTR5 LTR ERV1 -162 2276 741 2015 198 118 0 chr6 176178203 176178602 -13100952 + L1M1 LINE L1 17 462 -7103 2079 91 3 20 chr6 176179246 176179544 -13100010 - AluSg SINE Alu -17 293 1 276 266 243 12 chr6 176180008 176180181 -13099373 - L2 LINE L2 -222 3091 2879 261 83 0 0 chr6 176180823 176180859 -13098695 + (TGGGGG)n Simple_repeat Simple_repeat 1 36 0 251 68 136 0 chr6 176181091 176181135 -13098419 + MERVL LTR ERVL 4452 4501 -984 1371 228 25 38 chr6 176181139 176181507 -13098047 + MLT1A2 LTR MaLR 1 363 -11 1789 174 20 52 chr6 176182172 176182575 -13096979 - MLT1B LTR MaLR 0 390 1 481 220 0 68 chr6 176183193 176183325 -13096229 + MER3 DNA MER1_type 87 209 0 210 315 65 78 chr6 176183370 176183910 -13095644 - L2 LINE L2 -480 2834 2302 2343 41 27 0 chr6 176184015 176184309 -13095245 + AluY SINE Alu 1 302 -9 2038 132 3 0 chr6 176184691 176185001 -13094553 - AluSx SINE Alu -1 311 1 2271 76 3 3 chr6 176185327 176185628 -13093926 + AluSx SINE Alu 2 302 -10 1763 158 55 17 chr6 176186275 176186567 -13092987 - MER7A DNA MER2_type -3 343 43 267 31 0 0 chr6 176186567 176186599 -13092955 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 378 182 45 0 chr6 176186618 176186684 -13092870 + Tigger3(Golem) DNA MER2_type 1 69 -2960 912 121 0 0 chr6 176186686 176186827 -13092727 + (TCTCCC)n Simple_repeat Simple_repeat 3 143 0 1993 169 43 27 chr6 176187114 176187557 -13091997 - L1MB8 LINE L1 -4 6174 5725 1803 126 29 0 chr6 176187557 176187831 -13091723 - L1MA4A LINE L1 -6 6297 6012 1191 212 26 36 chr6 176188118 176188425 -13091129 - MLT1A1 LTR MaLR -61 304 1 1735 88 4 0 chr6 176189033 176189261 -13090293 + AluSq SINE Alu 1 229 -84 207 179 26 13 chr6 176191157 176191235 -13088319 + (TA)n Simple_repeat Simple_repeat 2 80 0 1169 270 130 14 chr6 176191490 176191935 -13087619 + LTR40a LTR ERVL 4 500 -19 1043 230 135 52 chr6 176192027 176192493 -13087061 + MLT1D LTR MaLR 1 505 0 205 118 39 0 chr6 176192730 176192781 -13086773 + (TG)n Simple_repeat Simple_repeat 1 53 0 300 319 0 0 chr6 176193179 176193449 -13086105 + (CA)n Simple_repeat Simple_repeat 1 270 0 181 264 14 83 chr6 176198844 176198916 -13080638 - MIR SINE MIR -74 188 122 1882 142 0 0 chr6 176199025 176199332 -13080222 + AluSx SINE Alu 1 312 0 310 335 55 12 chr6 176199799 176199963 -13079591 + LTR16C LTR ERVL 321 491 0 543 204 12 7 chr6 176200056 176200500 -13079054 + (CACCAT)n Simple_repeat Simple_repeat 1 446 0 253 266 13 7 chr6 176200542 176200696 -13078858 + (CACCAT)n Simple_repeat Simple_repeat 3 157 0 540 308 9 5 chr6 176200711 176201170 -13078384 + (CCA)n Simple_repeat Simple_repeat 1 461 0 1661 160 91 16 chr6 176201518 176201863 -13077691 + MLT2D LTR ERVL 3 380 -34 309 51 0 0 chr6 176201863 176201902 -13077652 + (CA)n Simple_repeat Simple_repeat 2 40 0 1661 160 91 16 chr6 176201902 176201931 -13077623 + MLT2D LTR ERVL 380 405 -9 2058 115 0 75 chr6 176202026 176202348 -13077206 + AluSx SINE Alu 1 298 -14 2844 196 47 2 chr6 176204474 176205050 -13074504 - L1MB3 LINE L1 -1 6182 5581 192 296 42 78 chr6 176205356 176205498 -13074056 + MIR SINE MIR 76 212 -50 2240 167 117 25 chr6 176205556 176206070 -13073484 + MER34B LTR ERV1 1 561 -4 2474 91 0 0 chr6 176206133 176206442 -13073112 - AluSx SINE Alu -3 309 1 284 313 61 0 chr6 176208023 176208122 -13071432 - L2 LINE L2 -4 3309 3205 326 248 120 0 chr6 176208796 176208913 -13070641 + MIR SINE MIR 20 150 -112 975 213 85 74 chr6 176209142 176209495 -13070059 + MER34B LTR ERV1 11 367 -198 21 0 0 0 chr6 176209495 176209516 -13070038 + AT_rich Low_complexity Low_complexity 1 21 0 27746 24 5 1 chr6 176209526 176213689 -13065865 + L1PA3 LINE L1 1971 6152 -3 2102 130 0 10 chr6 176213700 176213992 -13065562 - AluSx SINE Alu -22 290 2 674 162 71 56 chr6 176213992 176214190 -13065364 + MER34B LTR ERV1 346 546 -19 2242 108 0 38 chr6 176214194 176214510 -13065044 - AluSg SINE Alu -6 304 1 2380 105 0 9 chr6 176215155 176215470 -13064084 - AluSx SINE Alu 0 312 1 392 242 176 26 chr6 176215541 176215694 -13063860 - MER5A DNA MER1_type 0 189 14 2153 110 3 38 chr6 176215851 176216170 -13063384 - AluSx SINE Alu -4 308 1 2191 125 0 13 chr6 176216951 176217255 -13062299 + AluSx SINE Alu 1 300 -12 1913 162 0 17 chr6 176218006 176218302 -13061252 - AluJo SINE Alu -21 291 1 194 274 84 32 chr6 176219015 176219110 -13060444 + L3 LINE CR1 105 204 -1373 351 378 33 12 chr6 176220123 176220364 -13059190 + MIR SINE MIR 14 259 -3 318 26 0 0 chr6 176221029 176221067 -13058487 - AluSp/q SINE Alu -109 194 157 195 100 0 0 chr6 176221274 176221304 -13058250 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 2303 105 3 0 chr6 176223324 176223343 -13056211 - AluSx SINE Alu -7 305 288 207 0 0 0 chr6 176223343 176223366 -13056188 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2303 105 3 0 chr6 176223366 176223650 -13055904 - AluSx SINE Alu -24 288 1 221 308 31 0 chr6 176223739 176223804 -13055750 - L2 LINE L2 -19 3294 3228 1219 224 98 6 chr6 176223904 176224252 -13055302 - MER89 LTR ERV1 -176 383 4 738 189 12 24 chr6 176224254 176224418 -13055136 + MLT1D LTR MaLR 339 500 -5 3708 96 8 2 chr6 176224630 176225139 -13054415 - MER75 DNA T2_type -2 512 1 672 286 70 5 chr6 176226580 176226793 -13052761 + MIR SINE MIR 11 237 -25 1083 143 10 153 chr6 176227135 176227435 -13052119 - Tigger2 DNA MER2_type -10 2708 2452 3973 175 14 14 chr6 176227489 176228248 -13051306 - Tigger2 DNA MER2_type -1959 759 1 213 310 0 0 chr6 176228998 176229056 -13050498 - L2 LINE L2 -6 3266 3209 183 229 43 71 chr6 176229116 176229186 -13050368 + L2 LINE L2 3205 3272 0 555 196 63 0 chr6 176229687 176229830 -13049724 - MER20 DNA MER1_type -51 168 17 204 206 0 0 chr6 176232473 176232507 -13047047 + polypyrimidine Low_complexity Low_complexity 3 36 0 182 344 16 0 chr6 176233232 176233296 -13046258 - MIR SINE MIR -108 100 36 326 129 16 0 chr6 176235540 176235602 -13043952 + (TG)n Simple_repeat Simple_repeat 1 63 0 233 278 133 50 chr6 176236254 176236495 -13043059 + L1ME LINE L1 5351 5611 -510 4820 163 63 15 chr6 176236543 176237160 -13042394 + L1PB4 LINE L1 4468 5054 -1102 2228 89 0 11 chr6 176237160 176237440 -13042114 + AluSg SINE Alu 1 277 -33 306 0 0 0 chr6 176237440 176237474 -13042080 + (CA)n Simple_repeat Simple_repeat 1 34 0 4820 163 63 15 chr6 176237474 176238453 -13041101 + L1PB4 LINE L1 5053 6155 -1 2430 100 0 0 chr6 176238460 176238769 -13040785 + AluSg SINE Alu 1 309 -1 295 224 8 45 chr6 176239080 176239214 -13040340 + (TATAA)n Simple_repeat Simple_repeat 4 132 0 431 167 119 0 chr6 176242297 176242380 -13037174 + MLT1B LTR MaLR 1 93 -297 260 108 0 0 chr6 176242380 176242417 -13037137 + THE1B LTR MaLR 1 37 -391 2097 138 23 14 chr6 176242421 176242769 -13036785 + THE1B LTR MaLR 14 364 0 1275 171 19 76 chr6 176242769 176243084 -13036470 + MLT1B LTR MaLR 89 385 -5 288 257 15 7 chr6 176245728 176245864 -13033690 + GA-rich Low_complexity Low_complexity 3 139 0 290 273 84 7 chr6 176246152 176246306 -13033248 + MER20 DNA MER1_type 1 166 -53 255 31 0 0 chr6 176249229 176249261 -13030293 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1008 152 0 3 chr6 176250945 176251489 -13028065 + (CTCA)n Simple_repeat Simple_repeat 2 721 0 619 286 88 40 chr6 176251492 176251922 -13027632 - L2 LINE L2 0 3313 2863 205 357 101 5 chr6 176251955 176252154 -13027400 + L2 LINE L2 3095 3312 -1 2332 50 27 7 chr6 176252824 176253121 -13026433 + AluY SINE Alu 1 303 -8 22 0 0 0 chr6 176253569 176253591 -13025963 + AT_rich Low_complexity Low_complexity 1 22 0 635 289 138 10 chr6 176254796 176255101 -13024453 + L1MC2 LINE L1 5992 6335 -9 344 296 6 49 chr6 176255853 176256019 -13023535 - MIR SINE MIR -7 201 45 1817 152 10 3 chr6 176257438 176257728 -13021826 - AluJb SINE Alu -14 298 7 1434 248 70 23 chr6 176260203 176260630 -13018924 + MLT1C LTR MaLR 21 467 0 1525 198 17 3 chr6 176261874 176262172 -13017382 + AluJo SINE Alu 1 302 -10 320 293 55 56 chr6 176263057 176263280 -13016274 - MIR SINE MIR -21 241 7 260 341 24 44 chr6 176264054 176264259 -13015295 - L1MC4a LINE L1 -1860 5948 5748 269 384 65 0 chr6 176264273 176264502 -13015052 - L1MC4a LINE L1 -2123 5685 5442 338 0 24 0 chr6 176264722 176264764 -13014790 + (TA)n Simple_repeat Simple_repeat 1 43 0 2001 137 3 0 chr6 176264764 176265057 -13014497 - AluSq SINE Alu -19 294 1 803 114 98 0 chr6 176265057 176265180 -13014374 - AluSq/x SINE Alu -178 135 1 203 250 0 0 chr6 176267032 176267072 -13012482 + polypurine Low_complexity Low_complexity 3 42 0 235 288 195 0 chr6 176267441 176267559 -13011995 - MIR3 SINE MIR -19 189 49 220 316 77 43 chr6 176268459 176268576 -13010978 - L2 LINE L2 -4 3268 3148 375 360 64 11 chr6 176268697 176268961 -13010593 + MLT1L LTR MaLR 205 482 -133 22 0 0 0 chr6 176269043 176269065 -13010489 + AT_rich Low_complexity Low_complexity 1 22 0 213 196 0 0 chr6 176270499 176270545 -13009009 + (CA)n Simple_repeat Simple_repeat 1 46 0 327 198 55 0 chr6 176271104 176271195 -13008359 + MER20 DNA MER1_type 110 205 -14 823 171 77 134 chr6 176273290 176273640 -13005914 - Charlie1 DNA MER1_type -20 2741 2412 210 308 167 0 chr6 176275112 176275190 -13004364 - L2 LINE L2 -44 3228 3138 333 195 26 35 chr6 176275953 176276066 -13003488 - L1ME4a LINE L1 -45 6076 5965 245 226 0 0 chr6 176276216 176276269 -13003285 - L1ME4a LINE L1 -364 5757 5705 2168 92 6 49 chr6 176276948 176277274 -13002280 - AluSx SINE Alu 0 312 1 574 247 153 0 chr6 176277943 176278133 -13001421 + MER20 DNA MER1_type 1 219 0 1824 146 16 10 chr6 176280313 176280621 -12998933 + AluSx SINE Alu 3 312 0 32 26 0 0 chr6 176280622 176280661 -12998893 + AT_rich Low_complexity Low_complexity 1 39 0 191 339 0 42 chr6 176281975 176282093 -12997461 + MIR3 SINE MIR 42 154 -54 246 234 31 0 chr6 176283589 176283653 -12995901 + MLT1D LTR MaLR 24 89 -416 2608 97 17 14 chr6 176283653 176284014 -12995540 + THE1B LTR MaLR 1 362 -2 1380 223 97 15 chr6 176284165 176284555 -12994999 + MLT1D LTR MaLR 84 505 0 1392 209 71 20 chr6 176286130 176286480 -12993074 + L1MB3 LINE L1 5816 6183 0 1591 146 131 16 chr6 176287137 176287458 -12992096 - MER46B DNA MER2_type -3 233 1 207 0 0 0 chr6 176288865 176288888 -12990666 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 375 80 45 36 chr6 176291595 176291707 -12987847 + (CA)n Simple_repeat Simple_repeat 1 113 0 316 144 39 44 chr6 176291785 176291966 -12987588 + (CA)n Simple_repeat Simple_repeat 1 180 0 313 166 28 39 chr6 176292006 176292187 -12987367 + (CA)n Simple_repeat Simple_repeat 2 180 0 253 219 9 9 chr6 176292236 176292341 -12987213 + (CA)n Simple_repeat Simple_repeat 1 105 0 468 286 135 76 chr6 176294693 176294797 -12984757 - L1MC4 LINE L1 0 8042 7946 504 0 0 0 chr6 176294797 176294853 -12984701 + (TA)n Simple_repeat Simple_repeat 2 57 0 468 286 135 76 chr6 176294853 176295548 -12984006 - L1MC4 LINE L1 -96 7946 7196 2886 193 67 13 chr6 176296007 176296331 -12983223 + L1MB4 LINE L1 5461 5766 -414 261 57 0 0 chr6 176296331 176296366 -12983188 + (CA)n Simple_repeat Simple_repeat 2 36 0 2886 193 67 13 chr6 176296366 176296724 -12982830 + L1MB4 LINE L1 5766 6180 0 1383 126 75 0 chr6 176297229 176297443 -12982111 + MER30 DNA MER1_type 1 230 0 265 330 43 0 chr6 176297667 176297782 -12981772 - MIR3 SINE MIR -8 200 81 621 131 0 10 chr6 176299959 176300058 -12979496 + MER4A LTR ERV1 1 98 -566 * 1628 126 168 95 chr6 176300054 176300434 -12979120 + MER4A LTR ERV1 257 664 0 231 61 0 0 chr6 176301419 176301452 -12978102 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1477 152 130 33 chr6 176301455 176301549 -12978005 + AluJb SINE Alu 1 84 -228 2537 107 150 58 chr6 176301549 176301699 -12977855 + MER9 LTR ERVK 1 136 -375 3003 6 0 0 chr6 176301699 176302017 -12977537 - AluYb8 SINE Alu 0 318 1 2537 107 150 58 chr6 176302017 176302334 -12977220 + MER9 LTR ERVK 136 511 0 1477 152 130 33 chr6 176302334 176302515 -12977039 + AluJb SINE Alu 84 303 -9 1870 153 16 108 chr6 176304105 176304529 -12975025 + MLT2B1 LTR ERVL 1 385 -135 1224 210 12 4 chr6 176304559 176304811 -12974743 + MLT2B1 LTR ERVL 267 520 0 1176 170 32 28 chr6 176304811 176305064 -12974490 + MLT-int LTR MaLR 1 254 -1481 597 271 38 105 chr6 176305043 176305490 -12974064 + MLT-int LTR MaLR 641 1057 -678 * 1556 187 62 78 chr6 176305624 176306057 -12973497 + MLT1A1-int LTR MaLR 1310 1735 0 1800 177 43 6 chr6 176306058 176306409 -12973145 + MLT1A1 LTR MaLR 2 365 0 225 372 53 11 chr6 176307714 176307808 -12971746 + MIR SINE MIR 56 153 -109 26 0 0 0 chr6 176307808 176307834 -12971720 + AT_rich Low_complexity Low_complexity 1 26 0 243 234 99 78 chr6 176308975 176309116 -12970438 - MIR SINE MIR -80 182 39 423 276 77 29 chr6 176309140 176309310 -12970244 + MER5B DNA MER1_type 1 178 0 284 267 51 97 chr6 176310144 176310320 -12969234 - MIR3 SINE MIR -5 203 36 1978 140 19 26 chr6 176310584 176310891 -12968663 - AluJo SINE Alu -7 305 1 2164 244 29 9 chr6 176311790 176312373 -12967181 - L1MB8 LINE L1 -5 6173 5579 7417 46 2 1 chr6 176312459 176313821 -12965733 + L1PA5 LINE L1 4789 6151 -3 375 294 21 131 chr6 176313912 176314104 -12965450 - MER5A DNA MER1_type -8 181 1 1139 235 87 46 chr6 176314397 176314894 -12964660 + LTR53 LTR ERVL 3 519 0 198 0 0 0 chr6 176317087 176317109 -12962445 + (TG)n Simple_repeat Simple_repeat 2 23 0 1161 143 4 119 chr6 176318043 176318183 -12961371 + AluJo SINE Alu 1 103 -209 2568 74 0 0 chr6 176318183 176318493 -12961061 + AluY SINE Alu 1 310 -1 1161 143 4 119 chr6 176318493 176318596 -12960958 + AluJo SINE Alu 103 216 -96 258 209 75 0 chr6 176321704 176321771 -12957783 - MER116 DNA Mariner -8 72 1 249 301 41 0 chr6 176322351 176322424 -12957130 - MIR SINE MIR -70 192 117 188 200 18 0 chr6 176322511 176322566 -12956988 + T-rich Low_complexity Low_complexity 3 58 0 1956 88 84 28 chr6 176323175 176323460 -12956094 - AluSg SINE Alu -9 301 1 196 383 40 27 chr6 176327132 176327281 -12952273 + L3 LINE CR1 154 304 -1273 277 255 21 83 chr6 176327523 176327668 -12951886 + MER5A DNA MER1_type 5 140 -49 * 715 276 189 11 chr6 176327655 176328021 -12951533 + L2 LINE L2 1846 2276 -1038 396 364 70 31 chr6 176328109 176328496 -12951058 - L1MEd LINE L1 -5716 403 2 936 149 0 0 chr6 176331188 176331322 -12948232 - AluJb SINE Alu -9 303 170 239 350 35 7 chr6 176332195 176332338 -12947216 + L1ME LINE L1 5677 5823 -298 4133 226 60 8 chr6 176332358 176334212 -12945342 + L1MD2 LINE L1 4397 6343 -16 2272 78 24 0 chr6 176334963 176335257 -12944297 + AluY SINE Alu 1 301 -10 1777 164 3 19 chr6 176337355 176337666 -12941888 - AluJb SINE Alu -6 306 1 2390 172 59 16 chr6 176339430 176339939 -12939615 + LTR26B LTR ERV1 14 531 0 274 83 42 42 chr6 176342118 176342166 -12937388 - MLT2C2 LTR ERVL 0 464 417 312 293 98 0 chr6 176342196 176342278 -12937276 + L1MC4 LINE L1 6614 6703 -1339 231 215 0 0 chr6 176342281 176342346 -12937208 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 700 238 54 96 chr6 176342348 176342392 -12937162 - MLT2D LTR ERVL -40 480 436 198 0 0 0 chr6 176342392 176342414 -12937140 + (GA)n Simple_repeat Simple_repeat 1 22 0 700 238 54 96 chr6 176342414 176342771 -12936783 - MLT2D LTR ERVL -84 436 7 442 56 0 0 chr6 176345959 176346013 -12933541 + MER30 DNA MER1_type 1 54 -176 295 318 62 8 chr6 176346180 176346309 -12933245 - MIR SINE MIR -16 246 111 315 287 139 0 chr6 176346450 176346551 -12933003 + MIR SINE MIR 70 184 -78 206 245 19 19 chr6 176346732 176346785 -12932769 - L2 LINE L2 -92 3221 3169 193 300 150 17 chr6 176346808 176346928 -12932626 - L2 LINE L2 -4 3268 3133 2322 104 0 16 chr6 176352574 176352892 -12926662 + AluSq SINE Alu 1 313 0 502 296 110 74 chr6 176354845 176355334 -12924220 + L1ME4a LINE L1 4268 4774 -1372 875 302 121 65 chr6 176355792 176356534 -12923020 + L1ME4a LINE L1 5311 6094 -27 3392 132 26 23 chr6 176358385 176358955 -12920599 - L1PA16 LINE L1 0 6166 5595 212 279 127 57 chr6 176360023 176360146 -12919408 - MIR3 SINE MIR -6 202 89 2528 99 8 8 chr6 176360146 176360501 -12919053 + THE1A LTR MaLR 1 355 0 11897 88 14 1 chr6 176360501 176362062 -12917492 + THE1A-int LTR MaLR 1 1580 0 2368 121 8 8 chr6 176362062 176362417 -12917137 + THE1A LTR MaLR 1 355 0 212 279 127 57 chr6 176362417 176362449 -12917105 - MIR3 SINE MIR -118 90 34 248 378 54 22 chr6 176362595 176362780 -12916774 + MIR SINE MIR 6 196 -66 1272 114 105 9 chr6 176364617 176364827 -12914727 + MER30 DNA MER1_type 1 230 0 1855 100 44 4 chr6 176365135 176365433 -12914121 - AluSx SINE Alu 0 309 1 229 333 24 24 chr6 176366104 176366269 -12913285 + (CGGGG)n Simple_repeat Simple_repeat 4 168 0 1295 229 47 33 chr6 176368309 176368672 -12910882 - MLT1A2 LTR MaLR -2 372 5 195 100 0 0 chr6 176369741 176369771 -12909783 + (T)n Simple_repeat Simple_repeat 1 30 0 437 139 18 0 chr6 176371134 176371215 -12908339 + MLT1J2 LTR MaLR 65 133 -317 314 294 65 33 chr6 176371276 176371429 -12908125 + MLT1J2 LTR MaLR 247 404 -46 572 244 93 29 chr6 176371619 176371791 -12907763 + MIR SINE MIR 67 249 -13 27 0 0 0 chr6 176371896 176371923 -12907631 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr6 176374991 176375014 -12904540 + AT_rich Low_complexity Low_complexity 1 23 0 233 235 163 51 chr6 176375240 176375338 -12904216 + HAL1b LINE L1 360 468 -880 799 236 133 57 chr6 176375665 176376034 -12903520 + MLT1C LTR MaLR 67 463 -4 317 267 153 33 chr6 176376644 176376794 -12902760 - MIR SINE MIR -93 169 2 432 172 0 0 chr6 176377495 176377582 -12901972 + (AATAG)n Simple_repeat Simple_repeat 4 90 0 322 238 160 56 chr6 176377775 176378006 -12901548 + L1ME4a LINE L1 5088 5342 -804 250 288 171 17 chr6 176378192 176378543 -12901011 + L1ME4a LINE L1 5606 6010 -111 2522 46 0 0 chr6 176378701 176379004 -12900550 - AluY SINE Alu -8 303 1 222 372 124 21 chr6 176379148 176379293 -12900261 + MIR3 SINE MIR 3 162 -46 2059 126 3 3 chr6 176379293 176379594 -12899960 - AluSx SINE Alu -11 301 1 1986 186 28 30 chr6 176380488 176381047 -12898507 + MLT2A2 LTR ERVL 1 554 0 460 298 136 34 chr6 176383508 176383743 -12895811 + L3 LINE CR1 339 597 -980 356 269 80 96 chr6 176384074 176384239 -12895315 + L2 LINE L2 2966 3126 -146 1387 186 29 18 chr6 176384239 176384547 -12895007 - AluJo SINE Alu 0 311 1 356 269 80 96 chr6 176384547 176384692 -12894862 + L2 LINE L2 3126 3272 0 770 294 94 42 chr6 176385644 176386876 -12892678 + L1ME3A LINE L1 4632 5928 -242 205 297 63 45 chr6 176388819 176388930 -12890624 + MIR SINE MIR 113 225 -37 323 200 75 0 chr6 176388932 176389012 -12890542 - MER46C DNA MER2_type -122 216 131 4266 166 69 15 chr6 176390757 176391101 -12888453 + L1MB8 LINE L1 5162 5486 -692 2133 106 7 3 chr6 176391101 176391402 -12888152 + AluSq SINE Alu 1 302 -11 4266 166 69 15 chr6 176391402 176392007 -12887547 + L1MB8 LINE L1 5486 6162 -16 947 175 0 12 chr6 176392101 176392272 -12887282 + AluJb SINE Alu 134 302 -10 2180 82 27 0 chr6 176393749 176394041 -12885513 - AluSq SINE Alu -12 301 2 522 267 163 36 chr6 176395787 176396141 -12883413 - MLT1K LTR MaLR 0 615 190 270 319 0 0 chr6 176397115 176397187 -12882367 + CT-rich Low_complexity Low_complexity 3 74 0 241 326 98 54 chr6 176397661 176397845 -12881709 + L2 LINE L2 2325 2516 -798 227 315 94 27 chr6 176397889 176398038 -12881516 + L2 LINE L2 2645 2803 -511 392 227 52 0 chr6 176398813 176398922 -12880632 - MLT1D LTR MaLR -2 624 390 874 200 105 30 chr6 176398956 176399251 -12880303 - MLT1D LTR MaLR -188 317 1 344 296 63 42 chr6 176400430 176400572 -12878982 - MIR SINE MIR -90 172 28 200 324 28 0 chr6 176405039 176405110 -12874444 - MIR SINE MIR -113 149 77 308 221 253 19 chr6 176407074 176407228 -12872326 + L2 LINE L2 3123 3312 -1 30 27 0 0 chr6 176408319 176408356 -12871198 + AT_rich Low_complexity Low_complexity 1 37 0 181 371 43 0 chr6 176408806 176408922 -12870632 + L2 LINE L2 3189 3309 -4 2276 90 3 0 chr6 176409085 176409374 -12870180 - AluSc SINE Alu -19 290 1 225 316 0 0 chr6 176409395 176409452 -12870102 + L2 LINE L2 3245 3301 -12 21 36 0 0 chr6 176411424 176411452 -12868102 + GC_rich Low_complexity Low_complexity 1 28 0 243 310 229 28 chr6 176414095 176414414 -12865140 - L2 LINE L2 -8 3305 2923 364 215 65 0 chr6 176416247 176416354 -12863200 - L1MA9 LINE L1 -216 6096 5983 526 184 20 0 chr6 176416361 176416459 -12863095 - L1MA9 LINE L1 -351 5940 5841 690 182 14 27 chr6 176416463 176416573 -12862981 + L1MA9 LINE L1 6167 6276 -36 2341 91 7 0 chr6 176416573 176416870 -12862684 + AluSp SINE Alu 1 299 -14 690 182 14 27 chr6 176416870 176416907 -12862647 + L1MA9 LINE L1 6276 6312 0 1871 173 0 16 chr6 176417175 176417487 -12862067 + AluJb SINE Alu 1 307 -5 588 273 195 0 chr6 176417575 176417806 -12861748 + MLT1L LTR MaLR 340 615 0 1684 148 88 0 chr6 176418879 176419142 -12860412 - AluSx SINE Alu -24 288 3 30 0 0 0 chr6 176419276 176419306 -12860248 + AT_rich Low_complexity Low_complexity 1 30 0 241 309 51 62 chr6 176420211 176420486 -12859068 + L2 LINE L2 2703 2974 -340 182 255 20 147 chr6 176420620 176420722 -12858832 + L2 LINE L2 3019 3107 -206 333 145 0 0 chr6 176420757 176420819 -12858735 + (TCC)n Simple_repeat Simple_repeat 3 64 0 204 351 126 9 chr6 176420843 176420954 -12858600 + L2 LINE L2 3179 3302 -11 385 331 15 0 chr6 176422339 176422475 -12857079 + L1MEd LINE L1 561 698 -5421 661 206 70 29 chr6 176422925 176423107 -12856447 + MER20 DNA MER1_type 1 194 -25 343 149 0 40 chr6 176423107 176423181 -12856373 + L1MC1 LINE L1 6263 6333 0 661 206 70 29 chr6 176423181 176423203 -12856351 + MER20 DNA MER1_type 194 214 -5 570 291 49 72 chr6 176425234 176425684 -12853870 + L1MEd LINE L1 921 1380 -5341 2293 114 13 0 chr6 176425684 176425992 -12853562 + AluSx SINE Alu 1 312 0 570 291 49 72 chr6 176425992 176426597 -12852957 + L1MEd LINE L1 1380 1990 -4731 305 311 107 40 chr6 176426828 176427005 -12852549 + L1MEd LINE L1 2304 2492 -4048 1094 279 75 32 chr6 176427014 176427455 -12852099 + LTR40c LTR ERVL 1 460 -5 550 268 86 11 chr6 176427504 176427861 -12851693 + L1MEd LINE L1 2543 2937 -3603 382 344 50 92 chr6 176427884 176428242 -12851312 + L2 LINE L2 2929 3271 -1 203 243 0 0 chr6 176428355 176428392 -12851162 + polypyrimidine Low_complexity Low_complexity 4 40 0 1778 222 50 9 chr6 176428941 176429382 -12850172 + MLT1C LTR MaLR 1 459 -8 254 277 54 66 chr6 176429675 176429841 -12849713 + L2 LINE L2 2918 3081 -191 244 263 0 0 chr6 176430081 176430138 -12849416 + MER20 DNA MER1_type 9 65 -154 1322 188 144 12 chr6 176430138 176430457 -12849097 - LTR51 LTR ERV1 -309 362 2 223 335 107 31 chr6 176431606 176431830 -12847724 + L2 LINE L2 2594 2834 -480 623 237 0 5 chr6 176431978 176432579 -12846975 + (CA)n Simple_repeat Simple_repeat 1 597 0 205 369 0 0 chr6 176433871 176433955 -12845599 + L2 LINE L2 3186 3269 -3 192 388 12 12 chr6 176435335 176435420 -12844134 - MIR SINE MIR -103 105 21 2221 114 0 0 chr6 176437304 176437601 -12841953 - AluSx SINE Alu -15 297 1 331 289 161 41 chr6 176438738 176439154 -12840400 - L1MC4 LINE L1 -143 7665 7200 351 365 43 28 chr6 176439952 176440412 -12839142 + L1ME3A LINE L1 5482 5948 -222 288 239 14 14 chr6 176440502 176440573 -12838981 + GA-rich Low_complexity Low_complexity 2 72 0 2117 125 7 0 chr6 176442126 176442422 -12837132 - AluSx SINE Alu -14 298 1 741 188 16 0 chr6 176444169 176444297 -12835257 - FLAM_C SINE Alu -3 130 1 630 164 0 0 chr6 176444541 176444663 -12834891 + (TG)n Simple_repeat Simple_repeat 1 122 0 296 293 45 83 chr6 176444695 176444828 -12834726 - L2 LINE L2 -6 3266 3139 522 296 113 33 chr6 176445009 176445339 -12834215 - L1ME LINE L1 -302 5819 5432 2067 133 3 0 chr6 176445339 176445632 -12833922 - AluSx SINE Alu -10 302 9 522 296 113 33 chr6 176445632 176445814 -12833740 - L1ME LINE L1 -689 5432 5266 1303 208 27 87 chr6 176446960 176447373 -12832181 + MLT1B LTR MaLR 1 388 -2 243 346 61 6 chr6 176448102 176448249 -12831305 + MIR SINE MIR 18 173 -68 1105 151 18 6 chr6 176449203 176449369 -12830185 + AluJo SINE Alu 1 168 -144 3824 179 41 30 chr6 176450691 176451519 -12828035 + L1MB3 LINE L1 5345 6181 -2 329 208 208 7 chr6 176452688 176452832 -12826722 - LTR50 LTR ERVL -8 787 615 212 103 51 0 chr6 176453019 176453058 -12826496 + CT-rich Low_complexity Low_complexity 5 45 0 * 332 59 20 0 chr6 176453049 176453100 -12826454 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 2011 129 13 19 chr6 176453125 176453434 -12826120 - AluJb SINE Alu -5 307 1 560 214 112 48 chr6 176454538 176454744 -12824810 + MLT1E LTR MaLR 375 593 0 1694 188 27 0 chr6 176455060 176455353 -12824201 - AluSx SINE Alu -11 301 1 974 113 81 0 chr6 176457866 176458026 -12821528 - MER30 DNA MER1_type 0 230 58 2277 108 0 0 chr6 176458911 176459208 -12820346 - AluSx SINE Alu -14 298 2 367 290 120 47 chr6 176459900 176460176 -12819378 - HAL1 LINE L1 -1310 1197 902 2221 116 0 7 chr6 176460274 176460576 -12818978 + AluSx SINE Alu 1 300 -12 1872 131 56 0 chr6 176461603 176461870 -12817684 - AluSx SINE Alu -13 299 18 231 200 17 17 chr6 176461963 176462023 -12817531 + L1MC5 LINE L1 7744 7803 -158 2099 107 0 35 chr6 176463414 176463724 -12815830 + AluSx SINE Alu 3 302 0 782 197 37 65 chr6 176463821 176464115 -12815439 + pTR5 LTR ERV1 743 1028 -1410 5151 106 18 96 chr6 176464192 176465088 -12814466 + LTR12 LTR ERV1 1 826 0 192 40 0 0 chr6 176465927 176465952 -12813602 + (CCCCCG)n Simple_repeat Simple_repeat 4 28 0 268 259 83 19 chr6 176466751 176466859 -12812695 + L2 LINE L2 3198 3312 -1 2153 198 62 17 chr6 176468355 176468820 -12810734 + MER66B LTR ERV1 1 486 0 193 248 195 7 chr6 176470832 176470981 -12808573 + L2 LINE L2 2949 3125 -147 326 263 81 0 chr6 176473062 176473161 -12806393 + MIR SINE MIR 110 216 -46 206 239 0 0 chr6 176474957 176475003 -12804551 + MIR SINE MIR 98 143 -65 231 257 0 59 chr6 176476420 176476521 -12803033 + A-rich Low_complexity Low_complexity 4 98 0 186 158 0 53 chr6 176479058 176479096 -12800458 - L2 LINE L2 0 3272 3237 196 333 48 0 chr6 176479098 176479182 -12800372 - L3 LINE CR1 -833 744 657 357 308 81 43 chr6 176479192 176479377 -12800177 - L2 LINE L2 0 3313 3122 894 156 6 38 chr6 176479763 176479923 -12799631 + MER1B DNA MER1_type 4 158 -139 1207 123 5 42 chr6 176480147 176480359 -12799195 + MER1B DNA MER1_type 136 339 0 350 324 24 47 chr6 176480584 176480797 -12798757 + L2 LINE L2 2208 2415 -899 1370 249 28 67 chr6 176480810 176481305 -12798249 + MLT2B1 LTR ERVL 5 480 -40 285 128 0 0 chr6 176481305 176481352 -12798202 + (TG)n Simple_repeat Simple_repeat 1 47 0 275 132 75 0 chr6 176481362 176481415 -12798139 + MLT2B1 LTR ERVL 464 520 0 598 272 80 67 chr6 176481589 176481964 -12797590 + MLT1J LTR MaLR 77 456 -55 230 322 127 0 chr6 176482068 176482186 -12797368 + L2 LINE L2 3181 3313 0 731 348 107 29 chr6 176482594 176483618 -12795936 - L2 LINE L2 -1918 1396 293 28 0 0 0 chr6 176484665 176484693 -12794861 + AT_rich Low_complexity Low_complexity 1 28 0 418 327 219 16 chr6 176489307 176489622 -12789932 + L2 LINE L2 2259 2637 -677 339 245 92 95 chr6 176489659 176490038 -12789516 + L1 LINE L1 3955 4332 -1814 1991 186 14 14 chr6 176490050 176490415 -12789139 + MLT1A1 LTR MaLR 1 365 0 348 321 92 32 chr6 176490515 176490733 -12788821 + L1MC/D LINE L1 5288 5518 -2524 1772 185 13 16 chr6 176491971 176492284 -12787270 - AluJb SINE Alu 0 312 1 192 340 21 62 chr6 176493318 176493462 -12786092 + MIR SINE MIR 75 212 -50 706 216 0 0 chr6 176493587 176493726 -12785828 + FLAM_C SINE Alu 2 140 -3 580 111 56 0 chr6 176494666 176494810 -12784744 + (TG)n Simple_repeat Simple_repeat 2 153 0 2271 220 73 40 chr6 176494872 176495930 -12783624 + L1MDa LINE L1 20 1427 -5113 457 242 13 134 chr6 176495931 176496311 -12783243 + L1MDa LINE L1 3456 3789 -2751 681 331 20 7 chr6 176496316 176496609 -12782945 - MER115 DNA AcHobo -396 297 1 219 69 0 0 chr6 176497550 176497579 -12781975 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1387 226 72 23 chr6 176498646 176499088 -12780466 + MLT1C LTR MaLR 3 466 -1 758 224 166 0 chr6 176499782 176499987 -12779567 - MER7A DNA MER2_type 0 336 98 2425 94 7 0 chr6 176499996 176500305 -12779249 + AluSx SINE Alu 1 311 -1 1644 192 20 14 chr6 176500326 176500680 -12778874 - MER6 DNA MER2_type -2 863 248 453 183 12 0 chr6 176500673 176500755 -12778799 - MER6 DNA MER2_type -782 83 1 * 389 258 0 0 chr6 176500755 176500847 -12778707 - MER7A DNA MER2_type -256 90 1 2327 103 6 3 chr6 176502076 176502388 -12777166 - AluSq SINE Alu 0 313 1 513 219 73 0 chr6 176503259 176503396 -12776158 - MER58B DNA MER1_type -5 336 190 540 195 57 0 chr6 176503532 176503655 -12775899 - MER58B DNA MER1_type -148 193 64 185 220 0 85 chr6 176504468 176504527 -12775027 - MIR SINE MIR 0 262 209 213 256 156 49 chr6 176504920 176505126 -12774428 - MIR3 SINE MIR 0 262 34 2468 90 3 0 chr6 176507929 176508240 -12771314 - AluSx SINE Alu 0 312 1 275 289 29 10 chr6 176508338 176508442 -12771112 + (TATG)n Simple_repeat Simple_repeat 1 106 0 370 289 134 21 chr6 176508473 176508667 -12770887 - L1M4 LINE L1 -3596 2550 2335 357 245 19 123 chr6 176509437 176509592 -12769962 - HAL1b LINE L1 -739 609 471 285 51 0 0 chr6 176511552 176511591 -12767963 + (CA)n Simple_repeat Simple_repeat 2 40 0 1506 189 78 9 chr6 176512127 176512449 -12767105 - MER2 DNA MER2_type 0 344 1 1709 201 24 3 chr6 176513584 176513878 -12765676 - AluJb SINE Alu -8 304 5 480 167 0 65 chr6 176513889 176513997 -12765557 + MER4-int LTR ERV1 3630 3730 -2868 1244 210 51 85 chr6 176514079 176514956 -12764598 + MER4-int LTR ERV1 3082 3308 -1628 2528 69 3 0 chr6 176515202 176515505 -12764049 + AluSp SINE Alu 2 305 -8 2566 179 71 0 chr6 176515719 176516198 -12763356 + LTR64 LTR ERVK 1 513 0 3467 141 31 0 chr6 176519597 176520108 -12759446 - MER1A DNA MER1_type 0 527 1 231 262 0 16 chr6 176521223 176521284 -12758270 + G-rich Low_complexity Low_complexity 5 64 0 255 293 104 27 chr6 176522104 176522442 -12757112 - L1ME4a LINE L1 -7 6114 5751 239 322 35 0 chr6 176522821 176522908 -12756646 - MIR SINE MIR -49 213 124 266 311 160 14 chr6 176523865 176524215 -12755339 - L3 LINE CR1 -12 1565 1165 246 222 111 0 chr6 176524219 176524282 -12755272 - L2 LINE L2 -8 3305 3236 309 233 82 14 chr6 176524683 176524756 -12754798 + L1M3 LINE L1 4941 5018 -1128 319 281 92 23 chr6 176524834 176525097 -12754457 + L1M3 LINE L1 5152 5431 -743 21 0 0 0 chr6 176525732 176525753 -12753801 + AT_rich Low_complexity Low_complexity 1 21 0 2256 102 0 19 chr6 176526085 176526398 -12753156 + AluSx SINE Alu 1 307 -5 1593 206 33 31 chr6 176529174 176529389 -12750165 - MLT1B LTR MaLR 0 390 172 2409 96 0 0 chr6 176529389 176529692 -12749862 - AluSq SINE Alu -10 303 1 1593 206 33 31 chr6 176529692 176529865 -12749689 - MLT1B LTR MaLR -218 172 1 1368 189 59 13 chr6 176530648 176530955 -12748599 - MER21B LTR ERV1 -14 849 529 2430 203 49 9 chr6 176531067 176531600 -12747954 - MER21B LTR ERV1 -309 554 1 251 281 90 0 chr6 176531647 176531736 -12747818 - L3 LINE CR1 -11 1566 1470 22 0 0 0 chr6 176536776 176536798 -12742756 + AT_rich Low_complexity Low_complexity 1 22 0 244 259 12 25 chr6 176536858 176536939 -12742615 - MIR3 SINE MIR -39 169 90 2153 196 54 26 chr6 176538460 176539000 -12740554 - MER74A LTR ERVL 0 558 4 503 259 20 20 chr6 176539116 176539263 -12740291 + MIR3 SINE MIR 51 197 -11 207 0 0 0 chr6 176539709 176539732 -12739822 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 30 0 0 0 chr6 176540212 176540242 -12739312 + AT_rich Low_complexity Low_complexity 1 30 0 2174 58 0 0 chr6 176540293 176540551 -12739003 + AluY SINE Alu 45 302 -9 2357 98 7 0 chr6 176540806 176541113 -12738441 + AluSp SINE Alu 1 309 -4 923 148 66 6 chr6 176541139 176541321 -12738233 + L1MB3 LINE L1 5991 6183 0 213 154 0 0 chr6 176543307 176543346 -12736208 + (TG)n Simple_repeat Simple_repeat 1 39 0 1933 123 69 0 chr6 176545308 176545585 -12733969 - AluSx SINE Alu -16 296 1 231 204 0 0 chr6 176546598 176546652 -12732902 + (TG)n Simple_repeat Simple_repeat 2 55 0 590 235 128 41 chr6 176547583 176547779 -12731775 + MIR SINE MIR 6 218 -44 226 273 15 15 chr6 176549986 176550052 -12729502 + MIR SINE MIR 92 157 -105 23 33 0 0 chr6 176550582 176550612 -12728942 + AT_rich Low_complexity Low_complexity 1 30 0 378 0 0 0 chr6 176552015 176552057 -12727497 + (CA)n Simple_repeat Simple_repeat 2 43 0 180 0 0 0 chr6 176552874 176552894 -12726660 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1978 139 7 0 chr6 176557630 176557940 -12721614 - AluSx SINE Alu 0 312 1 273 333 146 0 chr6 176558793 176558958 -12720596 + MIR SINE MIR 15 203 -59 336 272 82 52 chr6 176560397 176560629 -12718925 + L1MC/D LINE L1 2 240 -5879 1992 235 51 11 chr6 176560664 176561322 -12718232 - L1MB5 LINE L1 0 6174 5254 594 333 142 30 chr6 176561826 176562361 -12717193 + L1MC/D LINE L1 4097 4691 -1438 2053 116 7 0 chr6 176562724 176563018 -12716536 + AluSq SINE Alu 1 296 -17 312 384 13 68 chr6 176563107 176563417 -12716137 + L1MC/D LINE L1 5472 5764 -2027 250 163 47 0 chr6 176563597 176563640 -12715914 + MLT1B LTR MaLR 3 47 -343 673 231 47 102 chr6 176564395 176564798 -12714756 + MLT1B LTR MaLR 2 382 -8 619 100 0 11 chr6 176566060 176566150 -12713404 - AluS SINE Alu -222 90 2 1251 165 9 5 chr6 176566576 176566794 -12712760 - AluJo SINE Alu -6 306 88 1833 143 48 40 chr6 176567930 176568302 -12711252 + THE1C LTR MaLR 1 375 0 468 313 73 53 chr6 176568397 176569540 -12710014 - L1ME LINE L1 -530 5916 4754 439 243 68 34 chr6 176569651 176569799 -12709755 - L2 LINE L2 -3 3269 3117 605 289 118 16 chr6 176569880 176570184 -12709370 - LTR16B LTR ERVL -103 361 27 807 297 108 21 chr6 176570293 176570922 -12708632 - L2 LINE L2 -151 3162 2464 257 245 202 0 chr6 176570898 176570992 -12708562 - L2 LINE L2 -1294 2020 1908 * 11361 157 102 11 chr6 176570997 176573236 -12706318 - L1M4c LINE L1 -3937 2447 5 23 54 0 0 chr6 176573502 176573539 -12706015 + AT_rich Low_complexity Low_complexity 1 37 0 314 266 87 77 chr6 176575230 176575437 -12704117 - L1ME LINE L1 -4341 2085 1877 190 287 75 53 chr6 176575514 176575608 -12703946 + MIR SINE MIR 81 176 -86 2307 64 0 42 chr6 176575932 176576245 -12703309 - AluY SINE Alu -11 300 1 27 0 0 0 chr6 176576254 176576281 -12703273 + AT_rich Low_complexity Low_complexity 1 27 0 1394 193 11 25 chr6 176576580 176576887 -12702667 + AluJo SINE Alu 7 309 0 1193 198 109 77 chr6 176577476 176577815 -12701739 - MLT1A1 LTR MaLR 0 365 16 959 153 18 0 chr6 176578283 176578453 -12701101 + L1PB1 LINE L1 5979 6151 0 1889 230 97 36 chr6 176578470 176579305 -12700249 - Charlie2 DNA MER1_type -103 2759 1874 440 191 169 71 chr6 176579395 176579620 -12699934 - Charlie2 DNA MER1_type -2615 247 1 2354 169 28 16 chr6 176580446 176580871 -12698683 + Tigger2a DNA MER2_type 4 433 -1 248 182 125 57 chr6 176581227 176581315 -12698239 - MER34 LTR ERV1 0 542 449 1843 98 0 0 chr6 176581629 176581875 -12697679 - AluSc SINE Alu -63 246 1 34 0 0 0 chr6 176583134 176583168 -12696386 + AT_rich Low_complexity Low_complexity 1 34 0 44536 41 4 2 chr6 176583168 176589309 -12690245 - L1PA4 LINE L1 0 6155 3 6924 73 2 10 chr6 176589319 176590584 -12688970 - L1PA8 LINE L1 -1 6171 4917 321 248 226 20 chr6 176590754 176591060 -12688494 - L1ME4a LINE L1 -153 5968 5600 497 272 89 12 chr6 176592450 176592619 -12686935 + MIR SINE MIR 12 193 -69 262 237 0 0 chr6 176593038 176593097 -12686457 - MLT2D LTR ERVL 0 520 462 226 398 0 12 chr6 176593407 176593568 -12685986 + (TATG)n Simple_repeat Simple_repeat 1 159 0 263 392 6 11 chr6 176593896 176594077 -12685477 + (TATG)n Simple_repeat Simple_repeat 1 180 0 443 326 0 6 chr6 176594129 176594310 -12685244 + (TA)n Simple_repeat Simple_repeat 1 180 0 1297 183 32 47 chr6 176594313 176594592 -12684962 - MLT2D LTR ERVL -40 374 100 826 152 7 0 chr6 176594592 176594773 -12684781 + AluJb SINE Alu 147 328 0 505 135 56 0 chr6 176594774 176594863 -12684691 - MLT2D LTR ERVL -367 97 4 769 145 24 157 chr6 176595441 176595520 -12684034 + MER20 DNA MER1_type 4 92 -127 1972 119 7 7 chr6 176595520 176595814 -12683740 - AluSx SINE Alu -18 294 1 769 145 24 157 chr6 176595814 176595983 -12683571 + MER20 DNA MER1_type 92 219 0 673 231 47 102 chr6 176597264 176597667 -12681887 - MLT1B LTR MaLR -8 382 2 250 163 47 0 chr6 176598422 176598465 -12681089 - MLT1B LTR MaLR -343 47 3 312 384 13 68 chr6 176598645 176598955 -12680599 - L1MC/D LINE L1 -2027 5764 5472 2053 116 7 0 chr6 176599044 176599338 -12680216 - AluSq SINE Alu -17 296 1 594 333 142 30 chr6 176599701 176600236 -12679318 - L1MC/D LINE L1 -1438 4691 4097 1992 235 51 11 chr6 176600740 176601398 -12678156 + L1MB5 LINE L1 5254 6174 0 336 272 82 52 chr6 176601433 176601665 -12677889 - L1MC/D LINE L1 -5879 240 2 273 333 146 0 chr6 176603104 176603269 -12676285 - MIR SINE MIR -59 203 15 1978 139 7 0 chr6 176604122 176604432 -12675122 + AluSx SINE Alu 1 312 0 180 0 0 0 chr6 176609168 176609188 -12670366 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 360 0 0 0 chr6 176610005 176610045 -12669509 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 33 0 0 chr6 176611448 176611478 -12668076 + AT_rich Low_complexity Low_complexity 1 30 0 226 273 15 15 chr6 176612008 176612074 -12667480 - MIR SINE MIR -105 157 92 602 230 128 41 chr6 176614281 176614477 -12665077 - MIR SINE MIR -44 218 6 231 204 0 0 chr6 176615408 176615462 -12664092 + (CA)n Simple_repeat Simple_repeat 2 55 0 1918 126 69 0 chr6 176616475 176616752 -12662802 + AluSx SINE Alu 1 296 -16 249 139 0 0 chr6 176618714 176618757 -12660797 + (CA)n Simple_repeat Simple_repeat 1 43 0 923 148 66 6 chr6 176620743 176620925 -12658629 - L1MB3 LINE L1 0 6183 5991 2357 98 7 0 chr6 176620951 176621258 -12658296 - AluSp SINE Alu -4 309 1 2174 58 0 0 chr6 176621513 176621771 -12657783 - AluY SINE Alu -9 302 45 30 0 0 0 chr6 176621822 176621852 -12657702 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr6 176622332 176622359 -12657195 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 7202 45 1 26 chr6 176622824 176623883 -12655671 + L1PA5 LINE L1 5117 6153 -1 21 0 0 0 chr6 176623944 176623965 -12655589 + AT_rich Low_complexity Low_complexity 1 21 0 3871 65 19 8 chr6 176623965 176624487 -12655067 + LTR17 LTR ERV1 253 780 0 29771 60 14 19 chr6 176624487 176628492 -12651062 + HERV17 LTR ERV1 1 3983 -4643 18724 44 11 1 chr6 176628600 176630925 -12648629 + HERV17 LTR ERV1 3672 6019 -2607 264 77 0 0 chr6 176630918 176630957 -12648597 + HERV17 LTR ERV1 7510 7548 -1078 * 2427 38 0 0 chr6 176630947 176631239 -12648315 + HERV17 LTR ERV1 8335 8626 0 2523 65 6 0 chr6 176631239 176631563 -12647991 + LTR17 LTR ERV1 1 326 -454 27 0 0 0 chr6 176631563 176631590 -12647964 + AT_rich Low_complexity Low_complexity 1 27 0 453 177 121 14 chr6 176631913 176632054 -12647500 + MLT1C LTR MaLR 67 222 -245 604 214 16 0 chr6 176635765 176635891 -12643663 + MER57A LTR ERV1 272 399 -4 467 227 143 0 chr6 176636048 176636202 -12643352 + Charlie4 DNA MER1_type 33 208 -1753 273 167 192 13 chr6 176636213 176636291 -12643263 + Charlie4 DNA MER1_type 1857 1948 -13 390 274 39 20 chr6 176636380 176636533 -12643021 + MLT1J2 LTR MaLR 290 445 -5 293 261 54 31 chr6 176637425 176637555 -12641999 - MER5A DNA MER1_type -56 133 1 266 320 10 19 chr6 176638881 176638984 -12640570 + L2 LINE L2 3171 3272 0 651 146 0 0 chr6 176639312 176639442 -12640112 + (TG)n Simple_repeat Simple_repeat 2 131 0 1815 155 18 6 chr6 176640082 176640411 -12639143 - MLT1A1 LTR MaLR -32 333 1 1274 214 28 16 chr6 176641513 176641627 -12637927 + L1MA9 LINE L1 5950 6061 -251 2213 95 42 142 chr6 176641627 176642121 -12637433 + MER65A LTR ERV1 1 445 0 1274 214 28 16 chr6 176642121 176642329 -12637225 + L1MA9 LINE L1 6061 6276 -36 3868 182 28 63 chr6 176643127 176643845 -12635709 + L1MB3 LINE L1 4904 5645 -538 2551 65 3 0 chr6 176643845 176644154 -12635400 + AluY SINE Alu 1 310 -1 3868 182 28 63 chr6 176644154 176644365 -12635189 + L1MB3 LINE L1 5645 5862 -321 2106 120 3 49 chr6 176644365 176644689 -12634865 + AluSq SINE Alu 3 311 -2 3868 182 28 63 chr6 176644689 176645076 -12634478 + L1MB3 LINE L1 5862 6183 0 765 100 45 0 chr6 176646308 176646618 -12632936 + (TAGA)n Simple_repeat Simple_repeat 1 324 0 207 284 18 110 chr6 176646879 176646988 -12632566 - MIR SINE MIR -162 100 2 472 200 121 21 chr6 176647576 176647716 -12631838 - MIR SINE MIR -1 261 108 4915 251 79 37 chr6 176647919 176648434 -12631120 - L1MB8 LINE L1 0 6178 5686 856 156 0 15 chr6 176648434 176648569 -12630985 - FLAM_C SINE Alu 0 133 1 4915 251 79 37 chr6 176648569 176648888 -12630666 - L1MB8 LINE L1 -492 5686 5382 1685 126 14 14 chr6 176648888 176649165 -12630389 + L1PA13 LINE L1 5886 6162 -1 4915 251 79 37 chr6 176649165 176649366 -12630188 - L1MB8 LINE L1 -796 5382 5191 315 0 0 0 chr6 176649366 176649401 -12630153 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 4915 251 79 37 chr6 176649401 176650971 -12628583 - L1MB8 LINE L1 -987 5191 3454 247 307 17 28 chr6 176651136 176651366 -12628188 - L1MCc LINE L1 -4891 1532 1272 241 284 0 0 chr6 176652890 176652964 -12626590 + L1MC4 LINE L1 7781 7854 -188 676 250 124 25 chr6 176653297 176653701 -12625853 + MLT1D LTR MaLR 29 461 -6 228 67 0 0 chr6 176654167 176654197 -12625357 + MLT1D LTR MaLR 154 183 -322 207 0 0 0 chr6 176654338 176654361 -12625193 + (GGAGA)n Simple_repeat Simple_repeat 5 27 0 648 243 105 0 chr6 176654371 176654552 -12625002 + MLT1D LTR MaLR 256 455 -50 2285 96 36 3 chr6 176655333 176655636 -12623918 + AluSp SINE Alu 1 313 0 1463 154 125 21 chr6 176655642 176655922 -12623632 + AluJb SINE Alu 1 309 -3 965 195 67 104 chr6 176656836 176657241 -12622313 + MLT1C LTR MaLR 1 467 0 1160 151 5 10 chr6 176657405 176657604 -12621950 + L1PB1 LINE L1 3 200 -6663 14430 181 31 18 chr6 176657604 176663553 -12616001 + L1PB1 LINE L1 634 6866 -1 41 0 0 0 chr6 176663553 176663594 -12615960 + AT_rich Low_complexity Low_complexity 1 41 0 189 0 0 0 chr6 176663798 176663819 -12615735 + (TCTG)n Simple_repeat Simple_repeat 1 21 0 225 286 45 75 chr6 176665655 176665788 -12613766 + MIR SINE MIR 46 174 -88 815 171 0 0 chr6 176667799 176667928 -12611626 + FLAM_C SINE Alu 1 129 -4 3690 156 31 3 chr6 176669326 176669975 -12609579 + L1PB4 LINE L1 5482 6148 -8 1049 127 0 6 chr6 176669978 176670159 -12609395 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1955 182 11 6 chr6 176670791 176671142 -12608412 + MLT1A1 LTR MaLR 1 353 -12 201 286 18 0 chr6 176672659 176672715 -12606839 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 181 303 45 0 chr6 176674334 176674400 -12605154 - MIR3 SINE MIR -31 177 109 2215 86 10 0 chr6 176678643 176678935 -12600619 + AluSx SINE Alu 1 295 -17 201 171 0 0 chr6 176679669 176679704 -12599850 + A-rich Low_complexity Low_complexity 2 36 0 1611 182 19 32 chr6 176679921 176680229 -12599325 - AluJb SINE Alu -8 304 1 243 229 0 0 chr6 176680548 176680596 -12598958 + GA-rich Low_complexity Low_complexity 2 49 0 193 196 65 0 chr6 176680636 176680682 -12598872 + MIR SINE MIR 37 85 -123 1696 138 48 52 chr6 176680940 176681230 -12598324 + AluJo SINE Alu 3 291 -21 1253 239 102 26 chr6 176681359 176681791 -12597763 + MLT1C LTR MaLR 1 370 -4 2215 98 23 10 chr6 176682463 176682768 -12596786 + AluSc SINE Alu 1 309 0 2917 61 27 42 chr6 176683256 176683666 -12595888 + MLT2A1 LTR ERVL 1 404 -40 243 114 0 0 chr6 176683674 176683709 -12595845 - Alu SINE Alu -98 35 1 462 18 0 0 chr6 176683836 176683891 -12595663 + MLT2A1 LTR ERVL 390 444 0 1955 98 91 0 chr6 176684537 176684811 -12594743 + AluSq SINE Alu 1 299 -14 2180 91 0 24 chr6 176686279 176686576 -12592978 - AluSg SINE Alu -19 291 2 288 260 148 32 chr6 176688779 176689118 -12590436 - L2 LINE L2 -76 3237 2860 222 91 0 0 chr6 176690813 176690846 -12588708 + (CA)n Simple_repeat Simple_repeat 2 34 0 30971 79 10 14 chr6 176691002 176695175 -12584379 - L1P LINE L1 -1985 4161 5 475 271 8 0 chr6 176695169 176695287 -12584267 - L1MEc LINE L1 -1967 4248 4130 * 2541 251 100 9 chr6 176695324 176696013 -12583541 - MER21B LTR ERV1 -57 806 55 313 53 0 0 chr6 176696019 176696057 -12583497 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 186 143 0 0 chr6 176696093 176696128 -12583426 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4068 239 67 65 chr6 176696143 176698027 -12581527 - L1MEc LINE L1 -2102 4113 2226 1517 209 64 3 chr6 176698027 176698338 -12581216 + MLT1A1 LTR MaLR 1 330 -35 1159 243 98 99 chr6 176698353 176698887 -12580667 - L1MEc LINE L1 -4127 2269 1736 4151 123 9 11 chr6 176698887 176699547 -12580007 - L1PA15 LINE L1 -7 6158 5500 1159 243 98 99 chr6 176699547 176700160 -12579394 - L1MEc LINE L1 -4660 1736 1124 2834 279 46 5 chr6 176700279 176701237 -12578317 - L1MEc LINE L1 -5264 1132 136 227 211 0 53 chr6 176701220 176701296 -12578258 + L1MEc LINE L1 782 853 -5543 * 286 206 8 135 chr6 176701297 176701423 -12578131 - L1MEc LINE L1 -6267 129 20 368 278 39 13 chr6 176701456 176701626 -12577928 - L1ME LINE L1 -5863 207 34 715 191 23 8 chr6 176701866 176701997 -12577557 + MER41C LTR ERV1 1 133 -421 2605 152 77 37 chr6 176702044 176702661 -12576893 + MER4B LTR ERV1 1 779 0 21 57 0 0 chr6 176702691 176702726 -12576828 + AT_rich Low_complexity Low_complexity 1 35 0 284 308 197 0 chr6 176702952 176703069 -12576485 + MER91C DNA MER1_type 1 140 0 199 331 33 33 chr6 176703640 176703761 -12575793 - MIR SINE MIR -132 130 10 213 94 0 0 chr6 176703913 176703945 -12575609 + (TG)n Simple_repeat Simple_repeat 2 33 0 300 83 0 0 chr6 176705778 176705826 -12573728 + (CTCTG)n Simple_repeat Simple_repeat 4 51 0 581 285 35 7 chr6 176706557 176706740 -12572814 + L1MC4 LINE L1 6451 6639 -1356 797 273 167 9 chr6 176706761 176707411 -12572143 + L1MC4 LINE L1 6820 7789 -253 2568 59 0 3 chr6 176707411 176707715 -12571839 - AluY SINE Alu -8 303 1 797 273 167 9 chr6 176707715 176707849 -12571705 + L1MC4 LINE L1 7789 7901 -141 230 207 17 0 chr6 176707850 176707908 -12571646 + L1MC4 LINE L1 7984 8042 0 1113 224 100 30 chr6 176708243 176708604 -12570950 - MLT2C1 LTR ERVL 0 397 12 1914 98 83 11 chr6 176709293 176709569 -12569985 - AluSx SINE Alu -16 296 1 346 282 113 21 chr6 176710979 176711121 -12568433 + MIR SINE MIR 68 222 -40 2411 139 17 48 chr6 176711476 176711935 -12567619 + MER65A LTR ERV1 1 445 0 506 187 20 80 chr6 176712196 176712346 -12567208 + MER65A-int LTR ERV1 254 394 -4477 1718 208 65 86 chr6 176712375 176712574 -12566980 + MER65A-int LTR ERV1 552 754 -4117 7044 47 53 0 chr6 176712574 176713426 -12566128 - MER11D LTR ERVK 0 897 1 1718 208 65 86 chr6 176713426 176713898 -12565656 + MER65A-int LTR ERV1 754 1209 -3662 3416 203 61 51 chr6 176713908 176714914 -12564640 + MER65A-int LTR ERV1 1511 2526 -2345 1219 178 55 85 chr6 176714977 176715664 -12563890 + MER65A-int LTR ERV1 1546 2384 -4374 2381 103 0 6 chr6 176715668 176715979 -12563575 + AluSg1 SINE Alu 1 309 0 759 191 50 41 chr6 176716277 176716497 -12563057 + MER65A-int LTR ERV1 3511 3732 -2866 2244 208 80 51 chr6 176716587 176718017 -12561537 + MER65A-int LTR ERV1 2472 5093 -1137 275 233 23 58 chr6 176718015 176718103 -12561451 + MER65A-int LTR ERV1 3887 5049 -897 * 1047 245 82 8 chr6 176718189 176718624 -12560930 + MER65A-int LTR ERV1 3606 4129 -742 1559 235 56 25 chr6 176718626 176719069 -12560485 + MER65A-int LTR ERV1 4237 4693 -178 2420 135 45 43 chr6 176719076 176719520 -12560034 + MER65A LTR ERV1 1 445 0 191 273 61 45 chr6 176720163 176720229 -12559325 - L2 LINE L2 -8 3305 3239 600 130 237 53 chr6 176720541 176720672 -12558882 - AluSg/x SINE Alu -21 289 135 2003 138 41 0 chr6 176720673 176720964 -12558590 - AluSx SINE Alu -9 303 1 2263 109 0 13 chr6 176721539 176721843 -12557711 - AluSg SINE Alu -10 300 1 960 109 8 0 chr6 176722144 176722272 -12557282 + AluSp SINE Alu 30 158 -155 196 286 65 0 chr6 176722308 176722385 -12557169 + L2 LINE L2 3232 3313 0 350 304 6 0 chr6 176722828 176722989 -12556565 + (CCCTG)n Simple_repeat Simple_repeat 2 163 0 182 309 144 65 chr6 176723612 176723700 -12555854 - L2 LINE L2 -856 2458 2354 2366 94 13 0 chr6 176723700 176724008 -12555546 + AluSx SINE Alu 1 312 0 182 309 144 65 chr6 176724008 176724058 -12555496 - L2 LINE L2 -960 2354 2309 213 39 0 0 chr6 176725158 176725184 -12554370 + (A)n Simple_repeat Simple_repeat 1 26 0 239 234 130 13 chr6 176725919 176725996 -12553558 + MIR SINE MIR 166 251 -11 451 275 5 24 chr6 176727726 176728370 -12551184 + (CA)n Simple_repeat Simple_repeat 1 631 0 252 254 0 0 chr6 176730631 176730690 -12548864 - MER58 DNA MER1_type 0 2420 2362 1499 188 34 17 chr6 176730803 176731095 -12548459 - AluJo SINE Alu -14 298 2 1432 163 54 14 chr6 176731972 176732248 -12547306 + MER7A DNA MER2_type 1 285 -61 822 201 25 17 chr6 176732617 176732856 -12546698 + Charlie5 DNA MER1_type 2380 2620 0 2240 103 13 3 chr6 176733116 176733417 -12546137 - AluSg SINE Alu -6 304 1 234 0 0 0 chr6 176733673 176733699 -12545855 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 221 0 0 33 chr6 176733789 176733819 -12545735 + (TG)n Simple_repeat Simple_repeat 2 30 0 2293 147 56 19 chr6 176733819 176734233 -12545321 - MSTB1 LTR MaLR -3 429 1 2207 113 7 0 chr6 176734590 176734881 -12544673 - AluSq SINE Alu -20 293 1 242 277 115 39 chr6 176735086 176735216 -12544338 - MIR3 SINE MIR -15 193 54 2082 108 21 7 chr6 176736496 176736784 -12542770 + AluSq SINE Alu 1 292 -21 264 340 78 0 chr6 176737372 176737475 -12542079 - MIR SINE MIR -71 191 81 2267 131 0 0 chr6 176739500 176739797 -12539757 - AluSx SINE Alu -15 297 1 1068 228 162 12 chr6 176739927 176740186 -12539368 - AluJb SINE Alu -4 298 1 2003 205 90 6 chr6 176740759 176741280 -12538274 + L1MC2 LINE L1 5755 6319 -25 2423 81 0 0 chr6 176741284 176741582 -12537972 + AluSc SINE Alu 1 298 -11 331 282 35 29 chr6 176742342 176742516 -12537038 + C-rich Low_complexity Low_complexity 4 178 0 200 337 20 20 chr6 176742728 176742826 -12536728 + L2 LINE L2 2298 2395 -919 2527 80 3 0 chr6 176742993 176743305 -12536249 + AluSq SINE Alu 1 313 0 211 349 69 43 chr6 176744456 176744688 -12534866 + MIR SINE MIR 6 243 -19 2332 114 0 0 chr6 176745508 176745807 -12533747 + AluSx SINE Alu 1 299 -13 1989 125 59 0 chr6 176746377 176746666 -12532888 + AluSq SINE Alu 1 306 -7 2423 91 7 0 chr6 176746666 176746974 -12532580 + AluY SINE Alu 1 310 -1 6780 104 39 15 chr6 176748320 176749304 -12530250 - LTR13 LTR ERVK 0 1007 1 1494 222 77 20 chr6 176749327 176749769 -12529785 + MLT1C LTR MaLR 1 467 0 203 189 0 0 chr6 176750049 176750086 -12529468 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 589 268 86 16 chr6 176750352 176750595 -12528959 + MER46C DNA MER2_type 1 260 -78 1988 120 32 7 chr6 176751055 176751339 -12528215 + AluJb SINE Alu 7 297 -15 489 235 52 37 chr6 176751815 176751951 -12527603 - MIR SINE MIR -21 241 104 2046 90 90 0 chr6 176752176 176752454 -12527100 + AluSx SINE Alu 1 303 -9 1033 131 0 8 chr6 176752620 176752866 -12526688 + (CA)n Simple_repeat Simple_repeat 1 243 0 347 314 105 0 chr6 176755178 176755283 -12524271 + L2 LINE L2 3137 3252 -20 1331 101 0 34 chr6 176755669 176755725 -12523829 + AluSg/x SINE Alu 112 168 -144 4149 34 25 0 chr6 176755725 176756203 -12523351 - LTR2B LTR ERV1 0 490 1 1331 101 0 34 chr6 176756203 176756354 -12523200 + AluSg/x SINE Alu 168 312 0 640 208 211 31 chr6 176756384 176756644 -12522910 - MER92B LTR ERV1 -176 460 154 183 80 0 0 chr6 176756679 176756704 -12522850 + (T)n Simple_repeat Simple_repeat 1 25 0 623 230 46 0 chr6 176756974 176757126 -12522428 + MER69A DNA AcHobo 19 177 0 476 253 35 86 chr6 176757538 176757736 -12521818 - MLT1I LTR MaLR -17 392 205 1650 109 0 18 chr6 176757887 176758116 -12521438 - AluSg/x SINE Alu -2 310 86 341 211 35 70 chr6 176758455 176758569 -12520985 - MER4-int LTR ERV1 -5437 1161 1052 1990 90 50 14 chr6 176758682 176758959 -12520595 + AluSq SINE Alu 1 287 -26 26 50 0 0 chr6 176758972 176759012 -12520542 + AT_rich Low_complexity Low_complexity 1 40 0 4115 124 10 49 chr6 176759012 176759248 -12520306 - L1PA16 LINE L1 -9 6157 5913 2070 113 0 42 chr6 176759248 176759413 -12520141 - AluSx SINE Alu -16 296 148 2637 56 0 0 chr6 176759413 176759717 -12519837 - AluY SINE Alu -7 304 1 2070 113 0 42 chr6 176759717 176759860 -12519694 - AluSx SINE Alu -164 148 1 4115 124 10 49 chr6 176759860 176760190 -12519364 - L1PA16 LINE L1 -253 5913 5622 2419 85 0 3 chr6 176760190 176760497 -12519057 - AluSx SINE Alu -6 306 1 4115 124 10 49 chr6 176760497 176760639 -12518915 - L1PA16 LINE L1 -544 5622 5476 1037 178 0 76 chr6 176760639 176760817 -12518737 - AluJb SINE Alu -20 292 133 2389 81 3 0 chr6 176760817 176761113 -12518441 + AluSp SINE Alu 1 297 -16 1037 178 0 76 chr6 176761113 176761159 -12518395 - AluJb SINE Alu -179 133 85 12665 201 41 30 chr6 176761161 176761879 -12517675 - L1PA16 LINE L1 -678 5488 4779 2010 104 3 46 chr6 176761879 176762186 -12517368 - AluSc SINE Alu -15 294 1 12665 201 41 30 chr6 176762186 176762462 -12517092 - L1PA16 LINE L1 -1387 4779 4508 2318 111 0 0 chr6 176762462 176762759 -12516795 - AluSc SINE Alu -12 297 1 12665 201 41 30 chr6 176762759 176762878 -12516676 - L1PA16 LINE L1 -1658 4508 4392 2436 85 0 3 chr6 176762878 176763183 -12516371 - AluSq SINE Alu -9 304 1 1952 153 14 0 chr6 176763185 176763480 -12516074 - AluSx SINE Alu -13 299 1 12665 201 41 30 chr6 176763480 176765639 -12513915 - L1PA16 LINE L1 -1774 4392 2174 643 189 54 0 chr6 176765645 176765756 -12513798 - FLAM_C SINE Alu -25 118 2 505 267 1 8 chr6 176765923 176766069 -12513485 - L1MC4 LINE L1 -1018 6825 6623 2328 118 0 6 chr6 176766092 176766406 -12513148 - AluSx SINE Alu 0 312 1 437 210 158 65 chr6 176767166 176767476 -12512078 - LTR10B LTR ERV1 -208 339 1 690 221 97 47 chr6 176767511 176767769 -12511785 + LTR37B LTR ERV1 198 468 0 981 266 133 21 chr6 176768174 176768641 -12510913 + MLT1G LTR MaLR 1 519 -71 875 203 33 47 chr6 176768707 176768919 -12510635 - MER20 DNA MER1_type -9 210 2 556 125 0 0 chr6 176769292 176769372 -12510182 - AluS SINE Alu -229 84 5 4499 125 34 8 chr6 176769378 176770703 -12508851 - MER51B-int LTR ERV1 -6381 1435 1 2389 101 48 43 chr6 176770703 176770814 -12508740 - MER51B LTR ERV1 0 377 268 2296 100 3 3 chr6 176770814 176771123 -12508431 + AluSx SINE Alu 1 309 -3 2389 101 48 43 chr6 176771123 176771386 -12508168 - MER51B LTR ERV1 -109 268 1 2174 132 42 69 chr6 176771386 176771736 -12507818 + MSTA LTR MaLR 8 345 -83 1826 88 0 0 chr6 176771736 176771964 -12507590 + AluSg SINE Alu 2 229 -81 2174 132 42 69 chr6 176771964 176772046 -12507508 + MSTA LTR MaLR 345 428 0 1500 191 40 65 chr6 176772224 176772654 -12506900 + LTR56 LTR ERV1 1 419 -26 2272 90 46 9 chr6 176772654 176772999 -12506555 - L1PA14 LINE L1 -1 6160 5803 1926 99 37 7 chr6 176773031 176773304 -12506250 + AluSq SINE Alu 29 309 -4 24 24 0 24 chr6 176773346 176773366 -12506188 + AT_rich Low_complexity Low_complexity 1 20 -21 2292 66 38 0 chr6 176773366 176773655 -12505899 + AluY SINE Alu 1 300 -11 24 24 0 24 chr6 176773655 176773676 -12505878 + AT_rich Low_complexity Low_complexity 20 41 0 198 259 0 0 chr6 176773753 176773807 -12505747 + MIR SINE MIR 53 106 -102 707 211 33 105 chr6 176774132 176774436 -12505118 - MLT1G LTR MaLR -28 562 281 1994 113 28 50 chr6 176774670 176774989 -12504565 - AluSq SINE Alu -1 312 1 21 57 0 0 chr6 176775941 176775976 -12503578 + AT_rich Low_complexity Low_complexity 1 35 0 2162 116 3 0 chr6 176776165 176776459 -12503095 + AluSg SINE Alu 2 296 -14 2377 96 0 0 chr6 176776696 176776997 -12502557 + AluSx SINE Alu 1 301 -11 2200 112 0 0 chr6 176777187 176777496 -12502058 + AluSq SINE Alu 1 309 0 2173 102 3 43 chr6 176777671 176777858 -12501696 - AluSx SINE Alu 0 312 142 2835 6 0 16 chr6 176777858 176778170 -12501384 - AluY SINE Alu -4 307 1 2173 102 3 43 chr6 176778170 176778307 -12501247 - AluSx SINE Alu -170 142 1 1601 198 77 26 chr6 176778564 176778979 -12500575 + MER63B DNA MER1_type 1 436 0 293 261 67 107 chr6 176779083 176779212 -12500342 - HAL1b LINE L1 -734 614 481 1815 160 51 0 chr6 176779212 176779506 -12500048 - AluJo SINE Alu -3 309 1 293 261 67 107 chr6 176779506 176779797 -12499757 - HAL1b LINE L1 -867 481 211 2403 71 14 0 chr6 176779828 176780123 -12499431 - AluSp SINE Alu -14 299 1 1914 206 51 22 chr6 176780254 176780745 -12498809 - MLT1D LTR MaLR 0 505 1 758 295 52 24 chr6 176781227 176781651 -12497903 + L1M4 LINE L1 4628 5063 -1083 2780 208 130 47 chr6 176781664 176782035 -12497519 + L1MC4 LINE L1 6780 7119 -923 2215 117 3 0 chr6 176782035 176782335 -12497219 - AluSx SINE Alu -11 301 1 2780 208 130 47 chr6 176782335 176782359 -12497195 + L1MC4 LINE L1 7119 7140 -902 2167 194 84 25 chr6 176782359 176782869 -12496685 - MLT1F LTR MaLR 0 542 3 2780 208 130 47 chr6 176782869 176783372 -12496182 + L1MC4 LINE L1 7140 7754 -288 3442 131 55 0 chr6 176783494 176784021 -12495533 - MER21A LTR ERV1 0 931 376 1343 113 57 9 chr6 176784026 176784238 -12495316 - MER21A LTR ERV1 -667 264 43 808 193 67 46 chr6 176784331 176784633 -12494921 + L1MC4 LINE L1 7745 7995 0 838 151 54 54 chr6 176784875 176785061 -12494493 - MER20 DNA MER1_type -31 188 3 817 160 8 0 chr6 176785119 176785250 -12494304 + FRAM SINE Alu 44 175 -1 3281 184 60 48 chr6 176785925 176786692 -12492862 - LTR19C LTR ERV1 0 779 4 246 188 31 47 chr6 176786692 176786756 -12492798 - MER34 LTR ERV1 -18 524 462 1692 167 11 55 chr6 176786759 176787106 -12492448 - LTR2B LTR ERV1 -12 478 147 571 142 8 110 chr6 176787087 176787214 -12492340 - MER34B LTR ERV1 -443 122 9 * 2032 121 14 0 chr6 176787335 176787632 -12491922 - AluSq SINE Alu -12 301 1 226 311 107 39 chr6 176787753 176787931 -12491623 + MIR SINE MIR 20 208 -54 496 218 98 8 chr6 176788020 176788153 -12491401 - MIR SINE MIR -109 153 9 2165 111 0 10 chr6 176788417 176788715 -12490839 - AluSg SINE Alu -15 295 1 1794 204 80 52 chr6 176788855 176789356 -12490198 + MLT2B1 LTR ERVL 6 520 0 2043 129 10 0 chr6 176789365 176789659 -12489895 - AluJb SINE Alu -15 297 1 534 291 62 35 chr6 176790116 176790343 -12489211 - LTR16C LTR ERVL -211 280 48 800 161 92 177 chr6 176790444 176790704 -12488850 - MER8 DNA MER2_type -1 238 1 473 227 84 19 chr6 176790705 176790859 -12488695 + HAL1b LINE L1 746 909 -439 15443 119 73 17 chr6 176791427 176791553 -12488001 - Tigger2 DNA MER2_type 0 2718 2601 2198 115 3 0 chr6 176791553 176791841 -12487713 - AluSx SINE Alu -22 290 2 15443 119 73 17 chr6 176791841 176793175 -12486379 - Tigger2 DNA MER2_type -117 2601 1344 2059 129 23 13 chr6 176793175 176793484 -12486070 - AluSx SINE Alu 0 312 1 15443 119 73 17 chr6 176793484 176794594 -12484960 - Tigger2 DNA MER2_type -1374 1344 1 186 319 6 88 chr6 176794731 176794891 -12484663 + MER5A DNA MER1_type 43 189 0 422 220 8 8 chr6 176796871 176796989 -12482565 + MER4C LTR ERV1 3 120 -345 381 219 21 21 chr6 176799289 176799385 -12480169 + MER103 DNA DNA 64 159 -7 1800 233 143 28 chr6 176800916 176801488 -12478066 - L1ME1 LINE L1 -5 6161 5524 21 36 0 0 chr6 176801857 176801885 -12477669 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 176802252 176802273 -12477281 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr6 176803606 176803643 -12475911 + AT_rich Low_complexity Low_complexity 1 37 0 223 304 118 10 chr6 176804489 176804591 -12474963 - L2 LINE L2 -8 3305 3193 578 290 35 0 chr6 176804782 176804982 -12474572 + MIR SINE MIR 23 229 -33 272 171 0 0 chr6 176805009 176805050 -12474504 - MER2 DNA MER2_type -28 317 277 2266 101 10 0 chr6 176805053 176805350 -12474204 + AluSc SINE Alu 1 300 -9 964 148 137 6 chr6 176805380 176805562 -12473992 - MER2 DNA MER2_type -139 206 1 2285 81 3 35 chr6 176807282 176807592 -12471962 - AluY SINE Alu -11 300 1 2204 136 0 29 chr6 176807791 176807931 -12471623 + AluSx SINE Alu 1 144 -158 1751 86 89 48 chr6 176807931 176808043 -12471511 + AluSq SINE Alu 24 130 -183 1925 107 89 0 chr6 176808043 176808324 -12471230 + AluSg SINE Alu 1 306 -4 1751 86 89 48 chr6 176808324 176808480 -12471074 + AluSq SINE Alu 130 303 -10 2204 136 0 29 chr6 176808480 176808649 -12470905 + AluSx SINE Alu 144 301 -1 29 47 0 0 chr6 176809563 176809606 -12469948 + AT_rich Low_complexity Low_complexity 1 43 0 213 209 0 0 chr6 176810179 176810222 -12469332 + (TG)n Simple_repeat Simple_repeat 2 44 0 1666 161 73 45 chr6 176810409 176810764 -12468790 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr6 176811151 176811172 -12468382 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 176811223 176811252 -12468302 + AT_rich Low_complexity Low_complexity 1 29 0 2338 82 3 0 chr6 176812486 176812780 -12466774 + AluSx SINE Alu 1 295 -17 222 284 136 0 chr6 176814258 176814346 -12465208 + MER91C DNA MER1_type 10 109 -31 181 81 27 27 chr6 176814663 176814700 -12464854 + (TAAAAA)n Simple_repeat Simple_repeat 5 41 0 27 49 0 0 chr6 176814740 176814781 -12464773 + AT_rich Low_complexity Low_complexity 1 41 0 1481 174 24 31 chr6 176815063 176815357 -12464197 - AluJb SINE Alu -20 292 1 2293 71 0 0 chr6 176815767 176816090 -12463464 - AluY SINE Alu 0 323 1 1049 129 35 0 chr6 176816109 176816280 -12463274 - MER2 DNA MER2_type -135 210 34 1664 171 137 40 chr6 176816712 176817134 -12462420 - MLT1C LTR MaLR -3 464 2 2245 90 0 7 chr6 176817195 176817485 -12462069 - AluSc SINE Alu -21 288 1 1027 242 106 8 chr6 176817681 176817945 -12461609 + Tigger5 DNA MER2_type 1 290 -2033 337 331 64 28 chr6 176818147 176818398 -12461156 - MARNA DNA Mariner -172 414 155 2417 75 0 0 chr6 176819435 176819727 -12459827 + AluSx SINE Alu 14 305 -7 732 169 0 16 chr6 176819761 176819885 -12459669 + FLAM_A SINE Alu 21 142 0 205 344 77 15 chr6 176820062 176820257 -12459297 + MIR SINE MIR 6 212 -50 204 163 0 23 chr6 176820285 176820328 -12459226 + (TTA)n Simple_repeat Simple_repeat 1 42 0 351 0 0 0 chr6 176821053 176821092 -12458462 + (CA)n Simple_repeat Simple_repeat 2 40 0 1088 256 283 30 chr6 176822157 176823190 -12456364 - L2 LINE L2 -829 2485 1192 2219 101 0 3 chr6 176824878 176825166 -12454388 + AluSg SINE Alu 1 287 -23 274 371 46 71 chr6 176825522 176825872 -12453682 - L2 LINE L2 -6 3266 2926 288 240 164 71 chr6 176826404 176826629 -12452925 + MIR SINE MIR 11 256 -6 533 148 211 8 chr6 176827415 176827543 -12452011 - MIR SINE MIR -30 232 79 840 239 5 16 chr6 176827771 176827955 -12451599 - MER58C DNA MER1_type 0 215 34 1366 173 13 17 chr6 176828134 176828371 -12451183 - MER46A DNA MER2_type 0 236 1 1311 166 89 113 chr6 176828488 176828947 -12450607 - LTR7 LTR ERV1 -2 448 1 35 0 0 0 chr6 176829856 176829891 -12449663 + AT_rich Low_complexity Low_complexity 1 35 0 715 161 24 16 chr6 176829891 176830015 -12449539 - FLAM_A SINE Alu -8 125 1 211 275 199 15 chr6 176830025 176830156 -12449398 + L2 LINE L2 2897 3051 -262 248 250 73 42 chr6 176830170 176830266 -12449288 + L2 LINE L2 3161 3259 -54 263 361 105 5 chr6 176830757 176830976 -12448578 - MIR SINE MIR -14 248 8 21 0 0 0 chr6 176831304 176831325 -12448229 + AT_rich Low_complexity Low_complexity 1 21 0 2313 102 0 0 chr6 176831895 176832198 -12447356 - AluSg SINE Alu -3 307 5 24 0 0 0 chr6 176832336 176832360 -12447194 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 176832539 176832568 -12446986 + AT_rich Low_complexity Low_complexity 1 29 0 330 216 63 45 chr6 176833550 176833661 -12445893 + MIR SINE MIR 100 212 -50 304 277 160 80 chr6 176834297 176834356 -12445198 + MIR SINE MIR 48 101 -161 2359 82 0 3 chr6 176834356 176834659 -12444895 - AluY SINE Alu -8 303 2 304 277 160 80 chr6 176834659 176834787 -12444767 + MIR SINE MIR 101 250 -12 1977 150 10 3 chr6 176835591 176835898 -12443656 - AluSx SINE Alu -2 310 2 594 215 104 0 chr6 176836582 176836717 -12442837 - MER58B DNA MER1_type 0 341 193 5575 85 1 7 chr6 176837599 176837921 -12441633 - L1PB1 LINE L1 -1 6150 5828 2185 116 3 0 chr6 176837921 176838222 -12441332 - AluSx SINE Alu -10 302 1 5575 85 1 7 chr6 176838222 176838631 -12440923 - L1PB1 LINE L1 -323 5828 5423 2141 99 18 0 chr6 176840638 176840911 -12438643 - AluSg SINE Alu -32 278 1 203 281 227 52 chr6 176841307 176841609 -12437945 + L2 LINE L2 2836 3220 -93 423 0 0 0 chr6 176841609 176841656 -12437898 + (TG)n Simple_repeat Simple_repeat 2 48 0 203 281 227 52 chr6 176841656 176841737 -12437817 + L2 LINE L2 3220 3286 -27 2334 98 0 7 chr6 176842192 176842498 -12437056 - AluSq SINE Alu -9 304 1 1254 206 154 0 chr6 176842717 176843028 -12436526 + MLT1A1 LTR MaLR 7 365 0 180 261 134 37 chr6 176843280 176843414 -12436140 - L2 LINE L2 -265 3048 2902 1785 95 14 74 chr6 176843914 176844210 -12435344 - AluSx SINE Alu -6 306 29 1497 101 0 18 chr6 176844210 176844427 -12435127 + AluY SINE Alu 94 306 -5 25 31 0 0 chr6 176844789 176844821 -12434733 + AT_rich Low_complexity Low_complexity 1 32 0 392 203 16 16 chr6 176844963 176845091 -12434463 + GA-rich Low_complexity Low_complexity 2 129 0 333 242 108 36 chr6 176845365 176845648 -12433906 + LTR16A LTR ERVL 104 449 -1 497 329 67 4 chr6 176845983 176846223 -12433331 + MIR SINE MIR 8 262 0 196 354 76 0 chr6 176846312 176846391 -12433163 + L2 LINE L2 2986 3070 -202 906 126 0 22 chr6 176846779 176846914 -12432640 + AluJo SINE Alu 4 135 -177 1700 177 0 39 chr6 176846914 176847219 -12432335 + AluJb SINE Alu 1 293 -19 1889 227 133 24 chr6 176847221 176847965 -12431589 + MER69 DNA AcHobo 1687 2511 -15 3179 183 37 21 chr6 176847966 176848617 -12430937 - L1MB7 LINE L1 -107 6146 5486 1627 224 84 80 chr6 176848615 176848691 -12430863 - L1MB7 LINE L1 -3429 2786 2712 * 2150 128 37 35 chr6 176848691 176849065 -12430489 + THE1C LTR MaLR 1 375 0 1627 224 84 80 chr6 176849065 176849162 -12430392 - L1MB7 LINE L1 -3503 2712 2617 2109 126 19 13 chr6 176849162 176849472 -12430082 + AluSx SINE Alu 1 312 0 1627 224 84 80 chr6 176849472 176849495 -12430059 - L1MB7 LINE L1 -3598 2617 2596 3188 142 103 72 chr6 176849495 176850200 -12429354 - LTR8A LTR ERV1 0 727 1 1627 224 84 80 chr6 176850200 176850963 -12428591 - L1MB7 LINE L1 -3619 2596 1876 1975 135 26 0 chr6 176851547 176851850 -12427704 - AluSx SINE Alu -1 311 1 2172 116 7 3 chr6 176853137 176853447 -12426107 - AluSx SINE Alu -1 311 1 1065 186 199 17 chr6 176854083 176854374 -12425180 + MER2 DNA MER2_type 1 344 0 2201 117 0 0 chr6 176854559 176854850 -12424704 - AluSx SINE Alu -21 291 1 253 296 63 49 chr6 176855644 176855786 -12423768 + MLT1J2 LTR MaLR 263 406 -44 2284 238 106 28 chr6 176855859 176855953 -12423601 + L1MDa LINE L1 1267 1352 -5188 5338 107 47 92 chr6 176855953 176856694 -12422860 - MER4D LTR ERV1 0 903 213 2381 99 3 0 chr6 176856694 176856998 -12422556 + AluSq SINE Alu 3 307 -6 5338 107 47 92 chr6 176856998 176857202 -12422352 - MER4D LTR ERV1 -690 213 1 2284 238 106 28 chr6 176857202 176857972 -12421582 + L1MDa LINE L1 1352 2199 -4341 2383 231 64 94 chr6 176858011 176858829 -12420725 - MER21B LTR ERV1 -57 806 14 652 263 31 20 chr6 176858941 176859234 -12420320 + L1MDa LINE L1 2237 2532 -4008 8247 227 35 17 chr6 176859235 176861564 -12417990 + L1MDa LINE L1 3032 5402 -1138 1724 120 0 0 chr6 176911564 176911814 -12367740 + AluSx SINE Alu 59 308 -4 321 194 0 0 chr6 176911814 176911876 -12367678 + MER53 DNA DNA 128 189 0 2108 94 0 7 chr6 176911911 176912210 -12367344 + AluY SINE Alu 12 308 -3 21 36 0 0 chr6 176912490 176912518 -12367036 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 176916247 176916268 -12363286 + AT_rich Low_complexity Low_complexity 1 21 0 988 163 155 17 chr6 176916547 176916786 -12362768 + ORSL DNA AcHobo 4 275 0 15087 124 41 11 chr6 176917465 176918707 -12360847 - Tigger1 DNA MER2_type 0 2418 1214 1823 103 0 35 chr6 176918707 176918989 -12360565 - AluSp SINE Alu 0 313 42 15087 124 41 11 chr6 176918989 176920094 -12359460 - Tigger1 DNA MER2_type -1204 1214 1 512 263 161 18 chr6 176921071 176921356 -12358198 - L1MDa LINE L1 -6206 334 9 1080 116 18 0 chr6 176922098 176922262 -12357292 - AluSg/x SINE Alu -8 304 138 1226 146 9 14 chr6 176922439 176922659 -12356895 - L1MA7 LINE L1 -23 6268 6050 1683 100 48 0 chr6 176922661 176922910 -12356644 + AluSc SINE Alu 28 288 -21 29 0 0 0 chr6 176922910 176922939 -12356615 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 176922979 176923003 -12356551 + AT_rich Low_complexity Low_complexity 1 24 0 13409 179 63 18 chr6 176924365 176926224 -12353330 - L1MA7 LINE L1 -231 6060 4286 180 0 0 0 chr6 176926224 176926244 -12353310 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 13409 179 63 18 chr6 176926244 176928011 -12351543 - L1MA7 LINE L1 -2005 4286 2265 346 383 6 6 chr6 176928008 176928175 -12351379 + L1M3a LINE L1 286 452 -5503 * 336 288 33 26 chr6 176928505 176928658 -12350896 + L1M3a LINE L1 546 699 -5256 24 0 0 0 chr6 176928893 176928917 -12350637 + AT_rich Low_complexity Low_complexity 1 24 0 780 159 8 23 chr6 176928917 176929049 -12350505 - FLAM_C SINE Alu -2 131 2 1347 171 128 15 chr6 176929056 176929383 -12350171 - L1MB5 LINE L1 0 6174 5811 767 189 4 8 chr6 176932653 176932908 -12346646 + GA-rich Low_complexity Low_complexity 1 254 0 264 144 75 7 chr6 176933254 176933400 -12346154 + (TG)n Simple_repeat Simple_repeat 2 157 0 274 130 86 19 chr6 176933483 176933645 -12345909 + (TG)n Simple_repeat Simple_repeat 2 174 0 423 131 62 31 chr6 176933674 176933974 -12345580 + (TG)n Simple_repeat Simple_repeat 1 309 0 225 224 52 0 chr6 176933983 176934041 -12345513 + MER103 DNA DNA 4 64 -102 27 73 0 0 chr6 176935238 176935293 -12344261 + AT_rich Low_complexity Low_complexity 1 55 0 1242 217 21 7 chr6 176935428 176935709 -12343845 + L1MA5A LINE L1 5498 5782 -515 8015 17 0 0 chr6 176935749 176937224 -12342330 - L1PA2 LINE L1 -1 6154 4680 17717 24 0 1 chr6 176937224 176939290 -12340264 + L1PA2 LINE L1 2587 4653 -1493 1620 192 44 54 chr6 176939290 176939697 -12339857 + MER57A LTR ERV1 1 403 0 2628 134 58 0 chr6 176939709 176940119 -12339435 - MER57B LTR ERV1 0 434 1 2685 158 8 20 chr6 176940119 176940613 -12338941 + L1MA5A LINE L1 5799 6294 -3 2021 125 6 10 chr6 176941145 176941457 -12338097 - AluSq SINE Alu -2 311 1 2025 138 33 58 chr6 176944200 176944668 -12334886 + MER4A LTR ERV1 1 417 -247 594 233 26 42 chr6 176944687 176944880 -12334674 + MER4C LTR ERV1 276 465 0 1530 107 27 4 chr6 176944888 176945113 -12334441 + MER30 DNA MER1_type 1 230 0 21 0 0 0 chr6 176945434 176945455 -12334099 + AT_rich Low_complexity Low_complexity 1 21 0 1779 139 31 10 chr6 176946946 176947240 -12332314 + AluSc SINE Alu 1 300 -9 241 262 33 0 chr6 176949121 176949182 -12330372 + L1ME3A LINE L1 6035 6097 -73 298 224 13 53 chr6 176949190 176949266 -12330288 + L2 LINE L2 2682 2754 -560 1112 252 69 49 chr6 176949271 176949723 -12329831 + MLT1C LTR MaLR 6 466 -1 240 279 31 54 chr6 176949723 176949852 -12329702 + L2 LINE L2 2749 2874 -440 248 325 24 56 chr6 176950001 176950127 -12329427 + L2 LINE L2 3192 3313 0 204 194 0 0 chr6 176953976 176954012 -12325542 + (CAGGG)n Simple_repeat Simple_repeat 5 40 0 203 143 0 24 chr6 176955020 176955062 -12324492 + (GGGAA)n Simple_repeat Simple_repeat 1 41 0 441 284 3 40 chr6 176955132 176955369 -12324185 + G-rich Low_complexity Low_complexity 1 228 0 213 296 153 10 chr6 176955764 176955862 -12323692 + MIR SINE MIR 40 151 -57 195 295 33 0 chr6 176955890 176955951 -12323603 + MIR3 SINE MIR 123 185 -23 1597 128 151 125 chr6 176956703 176957095 -12322459 - MER4A LTR ERV1 -2 662 261 456 153 12 24 chr6 176957095 176957180 -12322374 - MER4A LTR ERV1 -566 98 15 420 270 51 7 chr6 176959014 176959151 -12320403 + L1MD3 LINE L1 6416 6558 -1437 1929 251 39 59 chr6 176959166 176960002 -12319552 + L1MD3 LINE L1 6949 7995 0 2066 144 0 0 chr6 176960842 176961134 -12318420 - AluSx SINE Alu -20 292 1 710 102 0 0 chr6 176962538 176962636 -12316918 - AluSg/x SINE Alu -61 251 154 181 293 17 0 chr6 176962775 176962833 -12316721 + L2 LINE L2 590 648 -2666 207 323 118 0 chr6 176964927 176965020 -12314534 + MIR SINE MIR 80 183 -79 2554 80 3 0 chr6 176966864 176967175 -12312379 + AluSp SINE Alu 2 313 0 330 287 74 55 chr6 176968214 176968524 -12311030 + L1MC4 LINE L1 5686 6001 -1807 334 253 13 0 chr6 176968625 176968700 -12310854 - Tigger7 DNA MER2_type -23 2464 2389 * 1184 236 15 0 chr6 176968698 176968961 -12310593 - Tigger7 DNA MER2_type -466 267 1 934 216 9 52 chr6 176970608 176970840 -12308714 + MER58A DNA MER1_type 1 222 -2 211 353 78 45 chr6 176971988 176972257 -12307297 + L2 LINE L2 2985 3262 -10 312 200 143 0 chr6 176972510 176972580 -12306974 + L1MC4 LINE L1 6613 6692 -1350 189 0 0 0 chr6 176972580 176972601 -12306953 + (TG)n Simple_repeat Simple_repeat 2 22 0 2389 90 0 13 chr6 176972602 176972901 -12306653 - AluSx SINE Alu -17 295 1 26 0 0 0 chr6 176972901 176972927 -12306627 + AT_rich Low_complexity Low_complexity 1 26 0 311 229 36 0 chr6 176973295 176973378 -12306176 + Charlie5 DNA MER1_type 5 90 -2522 225 279 48 77 chr6 176974122 176974226 -12305328 + MIR SINE MIR 16 116 -92 400 323 0 2 chr6 176975974 176976348 -12303206 + GA-rich Low_complexity Low_complexity 1 373 0 198 299 26 0 chr6 176977669 176977746 -12301808 - L2 LINE L2 0 3313 3235 695 218 6 13 chr6 176981007 176981163 -12298391 + MER3 DNA MER1_type 50 204 -5 295 347 181 0 chr6 176981521 176981720 -12297834 + MIR SINE MIR 2 236 -26 351 0 0 0 chr6 176983244 176983283 -12296271 + (TG)n Simple_repeat Simple_repeat 2 40 0 444 147 0 0 chr6 176983973 176984048 -12295506 + (CA)n Simple_repeat Simple_repeat 1 75 0 361 292 32 51 chr6 176984140 176984356 -12295198 - L2 LINE L2 -18 3295 3084 2491 71 3 3 chr6 176984728 176985037 -12294517 - AluSx SINE Alu -3 309 1 306 268 21 0 chr6 176985590 176985687 -12293867 + (TA)n Simple_repeat Simple_repeat 1 99 0 301 200 12 75 chr6 176985690 176985770 -12293784 + L1MC4 LINE L1 6618 6692 -1350 222 37 0 0 chr6 176985771 176985798 -12293756 + (GA)n Simple_repeat Simple_repeat 2 28 0 4579 171 37 5 chr6 176988211 176989086 -12290468 + MER4D LTR ERV1 1 903 0 516 277 147 10 chr6 176989400 176989700 -12289854 + MER92C LTR ERV1 214 554 0 280 270 0 0 chr6 176990975 176991038 -12288516 - LTR44 LTR ERV1 -343 176 114 895 212 115 54 chr6 176992202 176992594 -12286960 - LTR37A LTR ERV1 -3 423 8 318 228 0 0 chr6 176993852 176993979 -12285575 + GA-rich Low_complexity Low_complexity 2 128 0 316 171 24 65 chr6 176993984 176994154 -12285400 + HERV17 LTR ERV1 711 873 -7753 281 333 37 9 chr6 176995138 176995246 -12284308 + MIR SINE MIR 63 173 -89 2981 161 18 38 chr6 176995248 176995855 -12283699 + L1MA5A LINE L1 5521 6115 -182 298 292 22 0 chr6 176997004 176997093 -12282461 - MIR SINE MIR -122 140 50 3869 158 39 16 chr6 176997446 176998207 -12281347 + MER4E LTR ERV1 1 779 0 2378 132 24 69 chr6 176998694 176999313 -12280241 + MER4E LTR ERV1 1 779 0 662 245 93 14 chr6 176999313 176999529 -12280025 + MER45B DNA AcHobo 60 292 -748 1518 215 51 64 chr6 176999554 177000120 -12279434 + MER34B LTR ERV1 19 563 -2 308 294 165 16 chr6 177000179 177000373 -12279181 + MER45B DNA AcHobo 357 579 -461 208 305 49 0 chr6 177000391 177000473 -12279081 - MER5A DNA MER1_type -6 183 98 226 281 185 0 chr6 177000551 177000697 -12278857 - MER5A DNA MER1_type -12 177 5 734 256 147 25 chr6 177000820 177001187 -12278367 - MLT1C LTR MaLR -54 413 2 399 323 101 15 chr6 177001417 177001615 -12277939 - MIR SINE MIR -24 238 24 210 37 0 0 chr6 177001659 177001686 -12277868 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 1482 172 93 56 chr6 177001732 177001818 -12277736 - MER45B DNA AcHobo -541 1040 959 2320 86 0 29 chr6 177001818 177002131 -12277423 + AluY SINE Alu 1 304 -7 1482 172 93 56 chr6 177002131 177002440 -12277114 - MER45B DNA AcHobo -622 959 630 306 73 0 0 chr6 177003038 177003079 -12276475 + (TTA)n Simple_repeat Simple_repeat 2 42 0 610 225 0 0 chr6 177003079 177003199 -12276355 - FLAM_C SINE Alu -22 121 2 281 310 60 0 chr6 177004459 177004559 -12274995 + MIR SINE MIR 102 207 -55 545 254 106 5 chr6 177005873 177006062 -12273492 - MER20B DNA MER1_type -9 774 567 21 0 0 0 chr6 177006558 177006579 -12272975 + AT_rich Low_complexity Low_complexity 1 21 0 1213 132 0 0 chr6 177006606 177006773 -12272781 + AluSg/x SINE Alu 132 298 -14 22083 115 9 13 chr6 177006949 177011273 -12268281 - L1PA8 LINE L1 -4 6483 2153 2211 134 7 0 chr6 177011273 177011578 -12267976 + AluSg SINE Alu 1 307 -3 22083 115 9 13 chr6 177011578 177013715 -12265839 - L1PA8 LINE L1 -4334 2153 10 22 56 0 0 chr6 177013956 177013992 -12265562 + AT_rich Low_complexity Low_complexity 1 36 0 446 252 25 124 chr6 177014357 177014516 -12265038 + L1MC4a LINE L1 5695 5817 -1991 2026 126 49 0 chr6 177014516 177014801 -12264753 + AluSx SINE Alu 1 299 -13 446 252 25 124 chr6 177014801 177014915 -12264639 + L1MC4a LINE L1 5817 5941 -1867 1832 209 22 3 chr6 177015710 177016065 -12263489 + MLT1A1 LTR MaLR 1 362 -3 5173 222 115 8 chr6 177016065 177017407 -12262147 + MLT1A1-int LTR MaLR 1 1485 -250 2469 149 36 5 chr6 177017410 177017825 -12261729 - MSTA LTR MaLR 0 428 1 1369 189 8 0 chr6 177017825 177018073 -12261481 + MLT1A1-int LTR MaLR 1484 1733 -2 1159 199 132 19 chr6 177018076 177018403 -12261151 + MLT1A1 LTR MaLR 2 459 -8 2280 129 89 30 chr6 177018530 177018934 -12260620 - MSTA LTR MaLR 0 428 1 1219 212 117 8 chr6 177019214 177019478 -12260076 + AluJo SINE Alu 1 293 -9 1080 208 132 13 chr6 177020078 177020381 -12259173 - MLT1F1 LTR MaLR -157 410 72 1036 147 0 7 chr6 177021020 177021170 -12258384 - AluJo SINE Alu -161 151 3 367 207 29 43 chr6 177021170 177021310 -12258244 - MER31-int LTR ERV1 -3012 1924 1787 23 54 0 0 chr6 177023102 177023139 -12256415 + AT_rich Low_complexity Low_complexity 1 37 0 234 0 0 0 chr6 177024227 177024253 -12255301 + (TA)n Simple_repeat Simple_repeat 2 27 0 242 257 188 10 chr6 177024268 177024369 -12255185 - L2 LINE L2 -4 3309 3191 230 259 12 25 chr6 177024481 177024562 -12254992 - MLT1F LTR MaLR -13 529 450 274 230 66 82 chr6 177024747 177024943 -12254611 - MLT1H LTR MaLR -356 193 1 297 319 64 0 chr6 177024953 177025047 -12254507 - MIR3 SINE MIR -51 157 58 240 267 189 11 chr6 177025052 177025142 -12254412 - MIR SINE MIR -84 124 19 2054 106 31 14 chr6 177025435 177025727 -12253827 - AluSq SINE Alu -16 297 1 2044 174 19 70 chr6 177026080 177026762 -12252792 - MER4D LTR ERV1 0 903 4 1936 129 9 37 chr6 177027992 177028052 -12251502 + HSMAR2 DNA Mariner 1 61 -1241 2414 44 10 17 chr6 177028052 177028347 -12251207 + AluY SINE Alu 3 295 -16 1936 129 9 37 chr6 177028347 177028635 -12250919 + HSMAR2 DNA Mariner 61 339 -963 281 160 0 0 chr6 177028637 177028687 -12250867 + ERVL LTR ERVL 3020 3069 -2695 * 4032 67 4 0 chr6 177028676 177029197 -12250357 + ERVL LTR ERVL 3245 3767 -1887 236 360 60 0 chr6 177030379 177030479 -12249075 - MIR SINE MIR -55 207 102 1506 196 0 21 chr6 177031831 177032116 -12247438 + AluJb SINE Alu 1 279 -33 388 86 29 0 chr6 177032126 177032196 -12247358 + (GA)n Simple_repeat Simple_repeat 2 73 0 299 209 221 38 chr6 177032980 177033138 -12246416 - MER4B LTR ERV1 -416 194 8 406 272 26 9 chr6 177033223 177033337 -12246217 - LTR28 LTR ERV1 -414 606 491 287 272 152 8 chr6 177033545 177033670 -12245884 - LTR1B LTR ERV1 -654 172 30 229 138 0 121 chr6 177033648 177033706 -12245848 - MER4D LTR ERV1 -852 51 1 * 4014 161 42 20 chr6 177034196 177034958 -12244596 - MER4E LTR ERV1 0 779 1 957 233 111 47 chr6 177035799 177036431 -12243123 + MER52C LTR ERV1 46 609 -669 187 235 84 76 chr6 177036436 177036555 -12242999 - MIR SINE MIR -140 122 3 766 221 123 56 chr6 177037339 177037455 -12242099 + LTR37A LTR ERV1 8 115 -311 363 23 0 0 chr6 177037455 177037499 -12242055 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 766 221 123 56 chr6 177037499 177037772 -12241782 + LTR37A LTR ERV1 115 423 -3 3938 117 12 2 chr6 177037820 177038401 -12241153 - LTR8 LTR ERV1 -104 587 1 34096 92 33 23 chr6 177038401 177039618 -12239936 - HUERS-P1 LTR ERV1 0 6263 5060 2306 105 0 29 chr6 177039618 177039933 -12239621 + AluSx SINE Alu 1 306 -6 34096 92 33 23 chr6 177039933 177044058 -12235496 - HUERS-P1 LTR ERV1 -1203 5060 476 2096 136 0 16 chr6 177044058 177044366 -12235188 + AluSx SINE Alu 1 303 -9 34096 92 33 23 chr6 177044366 177044847 -12234707 - HUERS-P1 LTR ERV1 -5787 476 1 1120 95 0 0 chr6 177044847 177044995 -12234559 - LTR8 LTR ERV1 0 691 544 1309 200 134 22 chr6 177046079 177046444 -12233110 + LTR44 LTR ERV1 114 519 0 2408 143 12 82 chr6 177046892 177047008 -12232546 - MER4C LTR ERV1 -2 463 340 2358 90 7 0 chr6 177047008 177047308 -12232246 - AluSp SINE Alu -4 309 8 2408 143 12 82 chr6 177047308 177047689 -12231865 - MER4C LTR ERV1 -125 340 1 1485 139 9 0 chr6 177048137 177048397 -12231157 + MER4B LTR ERV1 388 610 0 2025 113 0 7 chr6 177050359 177050666 -12228888 + AluSg SINE Alu 1 305 0 210 242 0 0 chr6 177050809 177050875 -12228679 + (TA)n Simple_repeat Simple_repeat 1 66 0 445 264 43 64 chr6 177051774 177052009 -12227545 + L2 LINE L2 3081 3310 -3 195 100 0 0 chr6 177052089 177052119 -12227435 + (TG)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr6 177052818 177052841 -12226713 + (CA)n Simple_repeat Simple_repeat 2 24 0 2092 109 14 0 chr6 177055808 177056091 -12223463 + AluSx SINE Alu 6 292 -20 2071 116 0 10 chr6 177056390 177056682 -12222872 + AluSx SINE Alu 24 312 0 2473 96 3 0 chr6 177056695 177057007 -12222547 + AluSp SINE Alu 1 313 0 2706 278 65 48 chr6 177057555 177058937 -12220617 - L1MC3 LINE L1 0 7785 6380 225 0 0 0 chr6 177060377 177060402 -12219152 + (T)n Simple_repeat Simple_repeat 1 25 0 249 233 78 11 chr6 177061911 177062001 -12217553 - MLT1B LTR MaLR -1 389 294 562 215 22 0 chr6 177062021 177062156 -12217398 - MLT1B LTR MaLR -252 138 1 193 295 33 0 chr6 177063431 177063492 -12216062 - MIR3 SINE MIR -23 185 123 220 296 153 10 chr6 177063520 177063618 -12215936 - MIR SINE MIR -57 151 40 249 300 0 58 chr6 177063992 177064182 -12215372 + C-rich Low_complexity Low_complexity 1 179 0 227 244 0 0 chr6 177064238 177064279 -12215275 + C-rich Low_complexity Low_complexity 6 46 0 257 310 28 49 chr6 177069145 177069287 -12210267 - L2 LINE L2 0 3313 3175 223 295 31 54 chr6 177069421 177069550 -12210004 - L2 LINE L2 -440 2874 2749 1058 251 62 46 chr6 177069550 177070004 -12209550 - MLT1C LTR MaLR -1 466 6 1671 292 139 28 chr6 177070009 177070946 -12208608 - L2 LINE L2 -560 2754 1714 328 314 26 46 chr6 177071001 177071154 -12208400 - MIR3 SINE MIR -51 157 8 666 226 0 0 chr6 177071263 177071400 -12208154 - Tigger7 DNA MER2_type -7 2480 2344 12888 144 24 23 chr6 177071408 177074824 -12204730 + L1P3 LINE L1 6 3443 -3018 24 32 0 0 chr6 177076162 177076193 -12203361 + AT_rich Low_complexity Low_complexity 1 31 0 627 163 30 94 chr6 177076484 177076546 -12203008 - MER53 DNA DNA 0 189 125 2254 122 3 0 chr6 177076546 177076850 -12202704 - AluSx SINE Alu -7 305 1 627 163 30 94 chr6 177076850 177076989 -12202565 - MER53 DNA DNA -64 125 1 1660 202 65 0 chr6 177077208 177077549 -12202005 + MLT1A1 LTR MaLR 3 365 0 2269 117 3 0 chr6 177078151 177078450 -12201104 - AluSx SINE Alu -12 300 1 204 40 0 0 chr6 177078483 177078508 -12201046 + (TG)n Simple_repeat Simple_repeat 2 26 0 1496 156 25 0 chr6 177078511 177078755 -12200799 - AluJo SINE Alu -26 286 37 362 125 16 0 chr6 177078761 177078825 -12200729 - AluJ/FLAM SINE Alu -201 101 37 503 194 20 0 chr6 177078831 177078929 -12200625 - AluJ/FLAM SINE Alu -211 101 2 762 322 115 33 chr6 177080024 177080835 -12198719 + L1MEd LINE L1 330 1206 -4913 935 157 5 31 chr6 177080838 177081029 -12198525 - MER53 DNA DNA -2 187 2 398 289 128 5 chr6 177081036 177081073 -12198481 + HAL1 LINE L1 1313 1344 -1163 1958 115 77 3 chr6 177081073 177081360 -12198194 + AluSx SINE Alu 1 308 -4 398 289 128 5 chr6 177081360 177081509 -12198045 + HAL1 LINE L1 1344 1522 -985 691 244 270 28 chr6 177081545 177082041 -12197513 + L2 LINE L2 2714 3296 -17 488 260 72 58 chr6 177082497 177082720 -12196834 + L1MEd LINE L1 2212 2437 -3692 2234 123 3 0 chr6 177082746 177083047 -12196507 - AluSx SINE Alu -10 302 1 2874 115 29 33 chr6 177083089 177083289 -12196265 - MER1A DNA MER1_type -2173 529 330 1793 116 0 24 chr6 177083289 177083540 -12196014 - AluSg SINE Alu -65 245 1 2874 115 29 33 chr6 177083540 177083827 -12195727 - MER1A DNA MER1_type -2372 330 44 280 334 96 14 chr6 177086432 177086499 -12193055 - MIR SINE MIR -19 243 183 1083 156 14 32 chr6 177086499 177086717 -12192837 - MER20B DNA MER1_type -2 217 4 280 334 96 14 chr6 177086717 177086868 -12192686 - MIR SINE MIR -79 183 1 252 246 14 113 chr6 177087004 177087146 -12192408 - MIR SINE MIR -11 251 124 1901 62 0 0 chr6 177087513 177087754 -12191800 + L1PA5 LINE L1 5912 6152 -2 23 68 0 0 chr6 177090554 177090598 -12188956 + AT_rich Low_complexity Low_complexity 1 44 0 188 324 97 62 chr6 177093978 177094123 -12185431 + L3 LINE CR1 650 799 -778 186 189 0 0 chr6 177096083 177096120 -12183434 + (TG)n Simple_repeat Simple_repeat 2 38 0 4144 151 69 8 chr6 177096512 177097252 -12182302 + LTR1 LTR ERV1 1 785 0 237 264 83 0 chr6 177097320 177097392 -12182162 + MIR SINE MIR 29 106 -156 537 16 0 0 chr6 177098130 177098192 -12181362 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 1873 164 37 0 chr6 177098194 177098492 -12181062 - AluJb SINE Alu -3 309 1 1653 140 0 0 chr6 177098645 177098881 -12180673 - AluSg/x SINE Alu 0 310 75 237 159 50 66 chr6 177101962 177102144 -12177410 + (TG)n Simple_repeat Simple_repeat 2 180 0 256 177 61 24 chr6 177102216 177102380 -12177174 + (TG)n Simple_repeat Simple_repeat 2 171 0 268 158 70 29 chr6 177102469 177102640 -12176914 + (TG)n Simple_repeat Simple_repeat 2 179 0 1769 162 7 0 chr6 177104058 177104330 -12175224 - AluJo SINE Alu -15 297 24 807 119 157 0 chr6 177105947 177106081 -12173473 - MSTA LTR MaLR -273 155 1 298 297 72 0 chr6 177106946 177107057 -12172497 + L2 LINE L2 3193 3311 -2 3924 155 37 33 chr6 177107595 177108319 -12171235 - LTR8A LTR ERV1 0 727 1 180 0 0 0 chr6 177108425 177108445 -12171109 + (T)n Simple_repeat Simple_repeat 1 20 0 2928 124 17 19 chr6 177108749 177109210 -12170344 + LTR46 LTR ERV1 1 460 0 214 358 171 17 chr6 177109234 177109456 -12170098 + L2 LINE L2 2933 3212 -60 4326 114 24 2 chr6 177109456 177110077 -12169477 + MER41B LTR ERV1 1 635 0 214 358 171 17 chr6 177110077 177110147 -12169407 + L2 LINE L2 3212 3270 -2 1499 265 64 38 chr6 177110212 177110734 -12168820 + MER77 LTR ERV1 87 601 -4 839 176 88 0 chr6 177110922 177111070 -12168484 + FRAM SINE Alu 9 169 -7 505 350 30 0 chr6 177112069 177112266 -12167288 + MIR SINE MIR 59 261 -1 441 363 28 14 chr6 177112423 177112638 -12166916 - MIR SINE MIR -17 245 28 291 276 86 0 chr6 177113028 177113144 -12166410 - L2 LINE L2 -1 3312 3187 363 304 22 29 chr6 177117215 177117353 -12162201 - MER5B DNA MER1_type -41 137 1 406 249 231 12 chr6 177117368 177117541 -12162013 + MIR SINE MIR 46 256 -6 3163 198 39 15 chr6 177118523 177119235 -12160319 - L1MB3 LINE L1 -10 6173 5445 279 344 47 6 chr6 177119689 177119860 -12159694 + MIR SINE MIR 30 210 -52 1353 226 88 14 chr6 177120323 177120686 -12158868 + MSTD LTR MaLR 1 390 -6 391 289 44 69 chr6 177120842 177121001 -12158553 - MIR SINE MIR -89 173 19 1657 209 39 25 chr6 177121017 177121317 -12158237 - MLT1A1 LTR MaLR 0 365 58 1728 154 40 30 chr6 177121317 177121616 -12157938 - AluSx SINE Alu -10 302 1 1657 209 39 25 chr6 177121616 177121674 -12157880 - MLT1A1 LTR MaLR -307 58 2 479 186 73 65 chr6 177121750 177121874 -12157680 + MER63 DNA MER1_type 1 751 -311 240 188 0 0 chr6 177121877 177121925 -12157629 + MER63 DNA MER1_type 979 1026 -35 349 236 132 90 chr6 177122393 177122573 -12156981 + MIR SINE MIR 3 189 -62 448 278 49 31 chr6 177123081 177123243 -12156311 - MIR SINE MIR -67 195 31 205 298 0 0 chr6 177123724 177123771 -12155783 + G-rich Low_complexity Low_complexity 2 48 0 253 260 153 0 chr6 177124054 177124223 -12155331 + Charlie8 DNA MER1_type 115 1421 -996 1232 269 39 16 chr6 177124276 177124662 -12154892 + MLT2C1 LTR ERVL 1 395 -2 257 273 198 18 chr6 177128146 177128373 -12151181 - MLT1J2 LTR MaLR -166 280 13 23 0 0 0 chr6 177129062 177129085 -12150469 + AT_rich Low_complexity Low_complexity 1 23 0 340 300 110 21 chr6 177129936 177130173 -12149381 + MLT1J LTR MaLR 78 335 -176 895 156 97 10 chr6 177131338 177131655 -12147899 + MLT1B LTR MaLR 1 387 -3 2471 100 3 0 chr6 177132776 177133086 -12146468 - AluSx SINE Alu -1 311 1 25 65 0 0 chr6 177133407 177133453 -12146101 + AT_rich Low_complexity Low_complexity 1 46 0 329 353 7 22 chr6 177133497 177133636 -12145918 - L2 LINE L2 -4 3309 3173 703 200 20 7 chr6 177135835 177135985 -12143569 - MER58B DNA MER1_type -1 340 189 269 333 25 50 chr6 177136439 177136637 -12142917 - L2 LINE L2 -211 3061 2869 400 306 38 6 chr6 177137484 177137644 -12141910 + L1ME1 LINE L1 35 199 -6197 401 53 0 18 chr6 177137763 177137820 -12141734 + (TA)n Simple_repeat Simple_repeat 1 56 0 2934 251 50 29 chr6 177137828 177138893 -12140661 + L1ME1 LINE L1 4443 5484 -751 2135 109 3 0 chr6 177138893 177139177 -12140377 + AluSx SINE Alu 1 285 -27 315 49 0 0 chr6 177139177 177139218 -12140336 + (CA)n Simple_repeat Simple_repeat 2 42 0 2934 251 50 29 chr6 177139218 177139901 -12139653 + L1ME1 LINE L1 5483 6230 -5 905 363 99 34 chr6 177142239 177142860 -12136694 + L3 LINE CR1 186 862 -715 2269 127 0 6 chr6 177142860 177143174 -12136380 + AluSx SINE Alu 1 312 0 905 363 99 34 chr6 177143174 177143280 -12136274 + L3 LINE CR1 862 960 -617 1028 238 85 45 chr6 177143442 177143857 -12135697 + MLT1E2 LTR MaLR 1 465 -189 678 157 0 0 chr6 177143933 177144035 -12135519 + AluS SINE Alu 1 102 -210 666 165 0 0 chr6 177144481 177144584 -12134970 + FAM SINE Alu 64 166 -19 2670 71 35 16 chr6 177144685 177145053 -12134501 - THE1C LTR MaLR 0 375 1 186 259 35 0 chr6 177145072 177145130 -12134424 - L2 LINE L2 0 3272 3213 1041 137 20 0 chr6 177145525 177145678 -12133876 - FAM SINE Alu -20 165 10 240 224 0 0 chr6 177146598 177146665 -12132889 + (TG)n Simple_repeat Simple_repeat 1 67 0 332 264 11 28 chr6 177146704 177146886 -12132668 + (TATG)n Simple_repeat Simple_repeat 1 179 0 273 273 0 0 chr6 177146889 177146944 -12132610 + (TG)n Simple_repeat Simple_repeat 1 55 0 300 222 83 19 chr6 177146950 177147058 -12132496 - MIR SINE MIR -17 245 131 24 0 0 0 chr6 177147184 177147208 -12132346 + AT_rich Low_complexity Low_complexity 1 24 0 2011 113 0 0 chr6 177147648 177147904 -12131650 - AluSx SINE Alu -56 256 1 190 418 42 13 chr6 177148978 177149217 -12130337 + MIR SINE MIR 17 262 0 475 268 79 55 chr6 177149604 177149986 -12129568 + MER92B LTR ERV1 34 636 0 391 313 39 33 chr6 177152890 177153072 -12126482 - MIR SINE MIR -60 202 20 186 103 0 0 chr6 177153767 177153796 -12125758 + (A)n Simple_repeat Simple_repeat 1 29 0 2765 32 3 0 chr6 177154019 177154329 -12125225 + AluY SINE Alu 1 311 0 252 306 0 0 chr6 177154472 177154544 -12125010 + G-rich Low_complexity Low_complexity 6 77 0 225 274 108 0 chr6 177154828 177154930 -12124624 + MER81 DNA DNA 1 113 -1 219 213 88 88 chr6 177159339 177159419 -12120135 + MIR3 SINE MIR 14 93 -115 279 309 21 10 chr6 177159448 177159545 -12120009 + MIR SINE MIR 157 254 -8 375 300 72 51 chr6 177160658 177160895 -12118659 - MIR SINE MIR -1 261 20 1096 286 171 52 chr6 177160917 177161784 -12117770 - L2 LINE L2 -4 3309 2546 3156 161 28 2 chr6 177161784 177162355 -12117199 + L1MA5A LINE L1 5711 6296 -1 2197 116 0 6 chr6 177162360 177162671 -12116883 + AluSc SINE Alu 1 309 0 1096 286 171 52 chr6 177162671 177162770 -12116784 - L2 LINE L2 -770 2543 2223 426 271 49 0 chr6 177162798 177162920 -12116634 - L2 LINE L2 -1296 2018 1891 1110 317 122 10 chr6 177163098 177163780 -12115774 - L2 LINE L2 -1494 1820 1063 536 113 0 0 chr6 177164141 177164221 -12115333 - MADE1 DNA Mariner 0 80 1 598 168 186 0 chr6 177165323 177165436 -12114118 - AluJb SINE Alu -177 135 2 306 280 75 3 chr6 177165437 177165562 -12113992 + ERVL LTR ERVL 2976 3146 -1926 325 276 15 67 chr6 177165785 177165919 -12113635 + ERVL LTR ERVL 3411 3537 -2227 280 282 144 29 chr6 177165963 177166137 -12113417 + ERVL LTR ERVL 3565 3758 -1896 499 315 42 13 chr6 177166496 177166734 -12112820 + ERVL LTR ERVL 4278 4522 -1242 750 170 48 30 chr6 177167362 177167527 -12112027 + MLT1B LTR MaLR 1 168 -222 234 114 0 68 chr6 177167530 177167574 -12111980 + MLT1B LTR MaLR 128 168 -222 234 114 0 68 chr6 177167577 177167621 -12111933 + MLT1C LTR MaLR 128 168 -222 834 188 265 16 chr6 177167633 177167878 -12111676 + MLT1C LTR MaLR 143 448 -19 1723 191 28 11 chr6 177167878 177168233 -12111321 - MLT1A1 LTR MaLR -4 361 1 325 184 53 0 chr6 177168262 177168338 -12111216 + ERVL LTR ERVL 5230 5309 -455 1194 165 63 16 chr6 177168858 177169113 -12110441 - MER39B LTR ERV1 -17 636 370 599 289 64 27 chr6 177169102 177169431 -12110123 + LTR16C LTR ERVL 151 491 0 * 2018 161 60 64 chr6 177170619 177171073 -12108481 + LTR47A LTR ERVL 1 452 0 4384 139 25 13 chr6 177171142 177171852 -12107702 + LTR62 LTR ERVK 1 719 0 552 296 119 24 chr6 177171890 177172184 -12107370 - L1MC4 LINE L1 -331 7711 7390 202 229 29 14 chr6 177172542 177172612 -12106942 + CT-rich Low_complexity Low_complexity 1 71 0 541 329 35 53 chr6 177173894 177173944 -12105610 + L3 LINE CR1 430 479 -1098 2306 119 0 0 chr6 177173944 177174255 -12105299 + AluSq SINE Alu 1 311 -2 541 329 35 53 chr6 177174255 177174581 -12104973 + L3 LINE CR1 479 799 -778 1275 194 38 38 chr6 177174636 177174714 -12104840 - MER33 DNA MER1_type -2265 320 243 1975 101 60 0 chr6 177174714 177175004 -12104550 + AluSx SINE Alu 1 306 0 1275 194 38 38 chr6 177175004 177175244 -12104310 - MER33 DNA MER1_type -2341 244 1 636 258 121 11 chr6 177175520 177175784 -12103770 - MLT1H LTR MaLR -205 344 52 324 314 51 0 chr6 177176028 177176146 -12103408 + L3 LINE CR1 1176 1299 -278 181 239 42 84 chr6 177176156 177176227 -12103327 - L2 LINE L2 -16 3256 3189 * 190 243 158 66 chr6 177176194 177176346 -12103208 + L3 LINE CR1 1298 1463 -114 190 324 0 42 chr6 177176781 177176852 -12102702 - MIR SINE MIR -92 116 49 582 246 45 31 chr6 177178159 177178440 -12101114 + L1ME1 LINE L1 5880 6161 -5 983 272 111 24 chr6 177178827 177179248 -12100306 - MLT1C LTR MaLR -3 442 3 353 251 242 18 chr6 177179277 177179496 -12100058 + L2 LINE L2 2243 2510 -804 297 312 8 32 chr6 177180799 177180924 -12098630 + MIR SINE MIR 15 136 -126 189 208 69 132 chr6 177182296 177182440 -12097114 - MER5A DNA MER1_type -39 150 16 1054 249 65 98 chr6 177182635 177182735 -12096819 - L1MCc LINE L1 -4427 2695 2593 2009 139 17 3 chr6 177182735 177183029 -12096525 - AluJb SINE Alu -14 298 1 1054 249 65 98 chr6 177183029 177183733 -12095821 - L1MCc LINE L1 -4529 2593 1867 2161 130 0 16 chr6 177183733 177184048 -12095506 - AluSg SINE Alu 0 310 1 1054 249 65 98 chr6 177184048 177184294 -12095260 - L1MCc LINE L1 -5255 1867 1614 2068 134 0 3 chr6 177184294 177184614 -12094940 - AluSq SINE Alu 0 319 1 1054 249 65 98 chr6 177184614 177184798 -12094756 - L1MCc LINE L1 -5508 1614 1278 42899 44 2 2 chr6 177184826 177190803 -12088751 + L1PA4 LINE L1 178 6155 0 597 248 68 0 chr6 177190840 177191001 -12088553 - L1MCc LINE L1 -5220 1203 1032 250 280 133 7 chr6 177192757 177192907 -12086647 + MLT1I LTR MaLR 1 169 -240 1773 131 16 38 chr6 177193244 177193557 -12085997 + MLT1A1 LTR MaLR 5 310 -55 306 337 99 6 chr6 177193723 177193904 -12085650 - MIR SINE MIR -19 243 46 220 184 132 26 chr6 177194171 177194247 -12085307 - MIR SINE MIR -70 192 109 907 152 11 0 chr6 177195500 177195678 -12083876 + GA-rich Low_complexity Low_complexity 1 180 0 2130 131 7 0 chr6 177195753 177196058 -12083496 + AluSx SINE Alu 1 307 -5 488 203 17 33 chr6 177196136 177196315 -12083239 - MLT2F LTR ERVL -8 655 421 3469 242 117 11 chr6 177196452 177197713 -12081841 - L1MDa LINE L1 -1909 4631 3238 10755 187 29 48 chr6 177197745 177201052 -12078502 + L1PB1 LINE L1 1300 4669 -2198 1495 82 5 0 chr6 177201052 177201247 -12078307 + AluSc SINE Alu 97 292 -17 1025 81 0 29 chr6 177201251 177201387 -12078167 + AluY SINE Alu 1 132 -179 10755 187 29 48 chr6 177201387 177203663 -12075891 + L1PB1 LINE L1 4672 6867 0 1505 265 92 3 chr6 177203704 177204245 -12075309 - L1MDa LINE L1 -3320 3220 2680 270 138 0 213 chr6 177204245 177204339 -12075215 - L1MB8 LINE L1 -3 6175 2214 1099 148 0 0 chr6 177204339 177204508 -12075046 - AluY SINE Alu 0 311 143 935 117 0 0 chr6 177204509 177204629 -12074925 + AluSq/x SINE Alu 7 126 -187 2636 179 77 36 chr6 177204629 177205028 -12074526 - L1MB7 LINE L1 -68 6115 5734 4498 167 63 12 chr6 177205028 177205848 -12073706 - MER21B LTR ERV1 -1 862 1 2636 179 77 36 chr6 177205848 177206447 -12073107 - L1MB7 LINE L1 -449 5734 5046 1331 59 0 6 chr6 177206447 177206630 -12072924 + MLT2A2 LTR ERVL 1 174 -270 10622 78 16 26 chr6 177206630 177207795 -12071759 + HERVL-A2 LTR ERVL 4263 5412 -242 2568 65 0 3 chr6 177207795 177208103 -12071451 + AluY SINE Alu 1 307 -4 10622 78 16 26 chr6 177208103 177208344 -12071210 + HERVL-A2 LTR ERVL 5412 5654 0 3403 81 2 36 chr6 177208344 177208811 -12070743 + MLT2A2 LTR ERVL 1 451 -2 8444 222 35 17 chr6 177208813 177211180 -12068374 - L1MB7 LINE L1 -1099 5047 2638 623 263 31 17 chr6 177211181 177211470 -12068084 - L1MDa LINE L1 -4008 2532 2240 2377 226 65 95 chr6 177211586 177212404 -12067150 + MER21B LTR ERV1 14 806 -57 2056 234 84 27 chr6 177212443 177213213 -12066341 - L1MDa LINE L1 -4341 2199 1354 5338 107 47 92 chr6 177213213 177213417 -12066137 + MER4D LTR ERV1 1 213 -690 2256 103 3 0 chr6 177213417 177213708 -12065846 - AluSq SINE Alu -19 294 3 5338 107 47 92 chr6 177213708 177214449 -12065105 + MER4D LTR ERV1 213 903 0 2056 234 84 27 chr6 177214449 177214543 -12065011 - L1MDa LINE L1 -5186 1354 1267 253 296 63 49 chr6 177214616 177214758 -12064796 - MLT1J2 LTR MaLR -44 406 263 2201 117 0 0 chr6 177215552 177215843 -12063711 + AluSx SINE Alu 1 291 -21 1065 186 199 17 chr6 177216028 177216319 -12063235 - MER2 DNA MER2_type 0 344 1 2172 116 7 3 chr6 177216955 177217265 -12062289 + AluSx SINE Alu 1 311 -1 1967 136 26 0 chr6 177218552 177218854 -12060700 + AluSx SINE Alu 1 310 -2 1627 224 84 80 chr6 177219438 177220201 -12059353 + L1MEc LINE L1 1876 2635 -3580 3188 142 103 72 chr6 177220201 177220906 -12058648 + LTR8A LTR ERV1 1 727 0 1627 224 84 80 chr6 177220906 177220929 -12058625 + L1MEc LINE L1 2635 2656 -3559 2109 126 19 13 chr6 177220929 177221239 -12058315 - AluSx SINE Alu 0 312 1 1627 224 84 80 chr6 177221239 177221336 -12058218 + L1MEc LINE L1 2656 2712 -3503 2150 128 37 35 chr6 177221336 177221710 -12057844 - THE1C LTR MaLR 0 375 1 1627 224 84 80 chr6 177221710 177221786 -12057768 + L1MEc LINE L1 2712 2786 -3429 * 3179 183 37 21 chr6 177221784 177222435 -12057119 + L1MB7 LINE L1 5417 6077 -107 1889 227 133 24 chr6 177222436 177223180 -12056374 - MER69 DNA AcHobo -15 2511 1687 1700 177 0 39 chr6 177223182 177223487 -12056067 - AluJb SINE Alu -19 293 1 906 126 0 22 chr6 177223487 177223622 -12055932 - AluJo SINE Alu -177 135 4 196 354 76 0 chr6 177224010 177224089 -12055465 - L2 LINE L2 -202 3070 2986 497 329 67 4 chr6 177224178 177224418 -12055136 - MIR SINE MIR 0 262 8 333 242 108 36 chr6 177224753 177225036 -12054518 - LTR16A LTR ERVL -1 449 104 392 203 16 16 chr6 177225310 177225438 -12054116 + CT-rich Low_complexity Low_complexity 2 129 0 25 31 0 0 chr6 177225580 177225612 -12053942 + AT_rich Low_complexity Low_complexity 1 32 0 2351 77 0 13 chr6 177225974 177226284 -12053270 - AluY SINE Alu -5 306 1 1985 102 12 68 chr6 177226311 177226635 -12052919 + AluSx SINE Alu 1 306 -6 180 261 134 37 chr6 177227135 177227269 -12052285 + L2 LINE L2 2902 3048 -265 1254 206 154 0 chr6 177227521 177227832 -12051722 - MLT1A1 LTR MaLR 0 365 7 2342 98 0 7 chr6 177228051 177228358 -12051196 + AluSq SINE Alu 1 305 -8 203 281 227 52 chr6 177228813 177228894 -12050660 - L2 LINE L2 -27 3286 3220 225 0 0 0 chr6 177228894 177228919 -12050635 + (CA)n Simple_repeat Simple_repeat 2 26 0 203 281 227 52 chr6 177228919 177229221 -12050333 - L2 LINE L2 -93 3220 2836 2141 99 18 0 chr6 177229617 177229890 -12049664 + AluSg SINE Alu 1 278 -32 5556 86 1 7 chr6 177231896 177232305 -12047249 + L1PB1 LINE L1 5423 5828 -323 2185 116 3 0 chr6 177232305 177232606 -12046948 + AluSx SINE Alu 1 302 -10 5556 86 1 7 chr6 177232606 177232928 -12046626 + L1PB1 LINE L1 5828 6150 -1 594 215 104 0 chr6 177233810 177233945 -12045609 + MER58B DNA MER1_type 193 341 0 1977 150 10 3 chr6 177234629 177234936 -12044618 + AluSx SINE Alu 2 310 -2 304 277 160 80 chr6 177235740 177235868 -12043686 - MIR SINE MIR -12 250 101 2359 82 0 3 chr6 177235868 177236171 -12043383 + AluY SINE Alu 2 303 -8 304 277 160 80 chr6 177236171 177236230 -12043324 - MIR SINE MIR -161 101 48 330 216 63 45 chr6 177236866 177236977 -12042577 - MIR SINE MIR -50 212 100 22 35 0 0 chr6 177237959 177237988 -12041566 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 177238167 177238191 -12041363 + AT_rich Low_complexity Low_complexity 1 24 0 2330 102 0 0 chr6 177238329 177238634 -12040920 + AluSg SINE Alu 5 309 -1 21 0 0 0 chr6 177239204 177239225 -12040329 + AT_rich Low_complexity Low_complexity 1 21 0 282 356 105 5 chr6 177239553 177239772 -12039782 + MIR SINE MIR 8 248 -14 248 250 73 42 chr6 177240263 177240359 -12039195 - L2 LINE L2 -54 3259 3161 211 275 199 15 chr6 177240373 177240504 -12039050 - L2 LINE L2 -262 3051 2897 715 161 24 16 chr6 177240514 177240638 -12038916 + FLAM_A SINE Alu 1 125 -8 35 0 0 0 chr6 177240638 177240673 -12038881 + AT_rich Low_complexity Low_complexity 1 35 0 1311 166 89 113 chr6 177241582 177242041 -12037513 + LTR7 LTR ERV1 1 448 -2 1366 173 13 17 chr6 177242158 177242395 -12037159 + MER46A DNA MER2_type 1 236 0 840 239 5 16 chr6 177242574 177242758 -12036796 + MER58C DNA MER1_type 34 215 0 533 148 211 8 chr6 177242986 177243114 -12036440 + MIR SINE MIR 79 232 -30 288 240 164 71 chr6 177243900 177244125 -12035429 - MIR SINE MIR -6 256 11 274 371 46 71 chr6 177244657 177245007 -12034547 + L2 LINE L2 2926 3266 -6 2219 101 0 3 chr6 177245363 177245651 -12033903 - AluSg SINE Alu -23 287 1 1095 256 283 30 chr6 177247339 177248372 -12031182 + L2 LINE L2 1192 2485 -829 333 0 0 0 chr6 177249437 177249474 -12030080 + (TG)n Simple_repeat Simple_repeat 2 38 0 204 163 0 23 chr6 177250199 177250242 -12029312 + (TAA)n Simple_repeat Simple_repeat 1 42 0 205 344 77 15 chr6 177250270 177250465 -12029089 - MIR SINE MIR -50 212 6 732 169 0 16 chr6 177250643 177250767 -12028787 - FLAM_A SINE Alu 0 142 21 2439 72 0 0 chr6 177250801 177251094 -12028460 - AluSx SINE Alu -6 306 14 337 331 64 28 chr6 177252131 177252382 -12027172 + MARNA DNA Mariner 155 414 -172 1027 242 106 8 chr6 177252584 177252848 -12026706 - Tigger5 DNA MER2_type -2033 290 1 2245 90 0 7 chr6 177253044 177253334 -12026220 + AluSc SINE Alu 1 288 -21 1664 171 137 40 chr6 177253395 177253817 -12025737 + MLT1C LTR MaLR 2 464 -3 1049 129 35 0 chr6 177254249 177254420 -12025134 + MER2 DNA MER2_type 34 210 -135 2294 71 0 0 chr6 177254439 177254762 -12024792 + AluY SINE Alu 1 323 0 1481 174 24 31 chr6 177255172 177255466 -12024088 + AluJb SINE Alu 1 292 -20 27 49 0 0 chr6 177255748 177255789 -12023765 + AT_rich Low_complexity Low_complexity 1 41 0 181 81 27 27 chr6 177255829 177255866 -12023688 + (TTTTTA)n Simple_repeat Simple_repeat 5 41 0 222 284 136 0 chr6 177256183 177256271 -12023283 - MER91C DNA MER1_type -31 109 10 2338 82 3 0 chr6 177257748 177258042 -12021512 - AluSx SINE Alu -17 295 1 22 35 0 0 chr6 177259276 177259305 -12020249 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 177259356 177259377 -12020177 + AT_rich Low_complexity Low_complexity 1 21 0 1666 161 73 45 chr6 177259764 177260119 -12019435 + MLT1A1 LTR MaLR 1 365 0 213 209 0 0 chr6 177260306 177260349 -12019205 + (CA)n Simple_repeat Simple_repeat 2 44 0 29 47 0 0 chr6 177260922 177260965 -12018589 + AT_rich Low_complexity Low_complexity 1 43 0 2198 135 0 32 chr6 177261879 177262048 -12017506 - AluSx SINE Alu -1 301 145 1942 80 83 45 chr6 177262048 177262204 -12017350 - AluSq SINE Alu -10 303 154 1970 102 88 0 chr6 177262204 177262489 -12017065 - AluSg SINE Alu 0 310 1 1942 80 83 45 chr6 177262489 177262620 -12016934 - AluSq SINE Alu -159 154 5 2198 135 0 32 chr6 177262620 177262761 -12016793 - AluSx SINE Alu -157 145 1 2266 81 3 35 chr6 177262960 177263270 -12016284 + AluY SINE Alu 1 300 -11 964 148 137 6 chr6 177264990 177265172 -12014382 + MER2 DNA MER2_type 1 206 -139 2266 101 10 0 chr6 177265202 177265499 -12014055 - AluSc SINE Alu -9 300 1 272 171 0 0 chr6 177265502 177265543 -12014011 + MER2 DNA MER2_type 277 317 -28 578 290 35 0 chr6 177265570 177265770 -12013784 - MIR SINE MIR -33 229 23 223 304 118 10 chr6 177265961 177266063 -12013491 + L2 LINE L2 3193 3305 -8 23 54 0 0 chr6 177266909 177266946 -12012608 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 177268348 177268369 -12011185 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 177268736 177268764 -12010790 + AT_rich Low_complexity Low_complexity 1 28 0 1800 233 143 28 chr6 177269133 177269705 -12009849 + L1ME1 LINE L1 5524 6161 -5 381 219 21 21 chr6 177271236 177271332 -12008222 - MER103 DNA DNA -7 159 64 225 286 70 6 chr6 177273361 177273532 -12006022 - MER4C LTR ERV1 -1 464 283 422 220 8 8 chr6 177273633 177273751 -12005803 - MER4C LTR ERV1 -345 120 3 197 252 9 103 chr6 177274333 177274440 -12005114 - MER5A DNA MER1_type -50 139 43 15410 121 72 16 chr6 177274575 177275688 -12003866 + Tigger2 DNA MER2_type 1 1050 -1668 2062 129 23 16 chr6 177275688 177275998 -12003556 + AluSx SINE Alu 1 312 0 15410 121 72 16 chr6 177275998 177277331 -12002223 + Tigger2 DNA MER2_type 1050 2601 -117 2217 116 0 3 chr6 177277331 177277625 -12001929 + AluSx SINE Alu 2 294 -18 15410 121 72 16 chr6 177277625 177277751 -12001803 + Tigger2 DNA MER2_type 2600 2718 0 471 214 84 19 chr6 177278319 177278473 -12001081 - HAL1b LINE L1 -439 909 746 776 165 92 177 chr6 177278474 177278734 -12000820 + MER8 DNA MER2_type 1 238 -1 571 282 62 35 chr6 177278835 177279062 -12000492 + LTR16C LTR ERVL 48 280 -211 2016 138 10 0 chr6 177279519 177279816 -11999738 + AluJb SINE Alu 1 300 -12 1770 206 80 52 chr6 177279825 177280326 -11999228 - MLT2B1 LTR ERVL 0 520 6 2230 108 0 10 chr6 177280466 177280773 -11998781 + AluSg SINE Alu 1 304 -6 496 218 98 8 chr6 177281037 177281170 -11998384 + MIR SINE MIR 9 153 -109 251 305 127 8 chr6 177281322 177281440 -11998114 - MIR SINE MIR -56 152 21 2247 93 10 10 chr6 177281560 177281861 -11997693 + AluSq SINE Alu 1 301 -12 575 136 8 112 chr6 177281974 177282099 -11997455 + MER34B LTR ERV1 9 120 -445 1699 168 12 37 chr6 177282101 177282429 -11997125 + LTR2B LTR ERV1 159 478 -12 246 188 31 47 chr6 177282432 177282496 -11997058 + MER34 LTR ERV1 462 524 -18 3294 183 60 48 chr6 177282496 177283263 -11996291 + LTR19C LTR ERV1 4 779 0 842 168 0 0 chr6 177283933 177284064 -11995490 - FRAM SINE Alu -2 174 44 818 156 54 54 chr6 177284122 177284308 -11995246 + MER20 DNA MER1_type 3 188 -31 808 193 67 46 chr6 177284550 177284852 -11994702 - L1MD3 LINE L1 0 8041 7745 1343 113 57 9 chr6 177284945 177285157 -11994397 + MER21A LTR ERV1 43 264 -667 3442 131 55 0 chr6 177285162 177285689 -11993865 + MER21A LTR ERV1 376 931 0 2753 212 130 47 chr6 177285811 177286314 -11993240 - L1MC4 LINE L1 -288 7754 7294 2129 196 84 25 chr6 177286314 177286824 -11992730 + MLT1F LTR MaLR 3 542 0 2753 212 130 47 chr6 177286824 177286848 -11992706 - L1MC4 LINE L1 -748 7294 7273 2136 122 3 0 chr6 177286848 177287143 -11992411 + AluSx SINE Alu 1 296 -16 2753 212 130 47 chr6 177287143 177287514 -11992040 - L1MC4 LINE L1 -769 7273 6780 745 297 52 24 chr6 177287527 177287951 -11991603 - L1M4 LINE L1 -1083 5063 4628 1900 208 51 22 chr6 177288433 177288924 -11990630 + MLT1D LTR MaLR 1 505 0 2478 72 13 0 chr6 177289055 177289359 -11990195 + AluSp SINE Alu 1 308 -5 187 182 0 36 chr6 177289518 177289573 -11989981 + GA-rich Low_complexity Low_complexity 4 56 0 364 298 93 19 chr6 177289625 177289700 -11989854 + HAL1b LINE L1 395 463 -885 1820 157 51 0 chr6 177289700 177289994 -11989560 + AluJo SINE Alu 1 309 -3 364 298 93 19 chr6 177289994 177290123 -11989431 + HAL1b LINE L1 463 614 -734 1601 198 77 26 chr6 177290227 177290642 -11988912 - MER63B DNA MER1_type 0 436 1 2142 108 3 43 chr6 177290899 177291036 -11988518 + AluSx SINE Alu 1 142 -170 2853 6 0 16 chr6 177291036 177291348 -11988206 + AluY SINE Alu 1 307 -4 2142 108 3 43 chr6 177291348 177291535 -11988019 + AluSx SINE Alu 142 312 0 2240 105 0 0 chr6 177291710 177292019 -11987535 - AluSq SINE Alu 0 309 1 2469 93 0 0 chr6 177292209 177292521 -11987033 - AluSx SINE Alu 0 312 1 2182 112 3 0 chr6 177292758 177293052 -11986502 - AluSg SINE Alu -14 296 2 21 57 0 0 chr6 177293241 177293276 -11986278 + AT_rich Low_complexity Low_complexity 1 35 0 2002 113 28 50 chr6 177294225 177294545 -11985009 + AluSq SINE Alu 1 313 0 697 214 33 105 chr6 177294786 177295090 -11984464 + MLT1G LTR MaLR 281 562 -28 198 259 0 0 chr6 177295415 177295469 -11984085 - MIR SINE MIR -102 106 53 24 24 0 24 chr6 177295546 177295567 -11983987 + AT_rich Low_complexity Low_complexity 1 21 -20 2312 62 38 0 chr6 177295567 177295856 -11983698 - AluY SINE Alu -11 300 1 24 24 0 24 chr6 177295856 177295876 -11983678 + AT_rich Low_complexity Low_complexity 21 41 0 1942 95 37 7 chr6 177295918 177296191 -11983363 - AluSq SINE Alu -4 309 29 2272 90 46 9 chr6 177296223 177296568 -11982986 + L1PA14 LINE L1 5803 6160 -1 1500 191 40 65 chr6 177296568 177296998 -11982556 - LTR56 LTR ERV1 -26 419 1 2104 135 51 70 chr6 177297176 177297258 -11982296 - MSTA LTR MaLR 0 428 346 1826 88 0 0 chr6 177297258 177297486 -11982068 - AluSg SINE Alu -81 229 2 2104 135 51 70 chr6 177297486 177297832 -11981722 - MSTA LTR MaLR -82 346 8 2402 99 48 43 chr6 177297832 177298095 -11981459 + MER51B LTR ERV1 1 268 -109 2296 100 3 3 chr6 177298095 177298404 -11981150 - AluSx SINE Alu -3 309 1 2402 99 48 43 chr6 177298404 177298515 -11981039 + MER51B LTR ERV1 268 377 0 4475 125 34 8 chr6 177298515 177299840 -11979714 + MER51B-int LTR ERV1 1 1435 -6381 556 125 0 0 chr6 177299846 177299926 -11979628 + AluS SINE Alu 5 84 -229 857 207 33 47 chr6 177300298 177300511 -11979043 + MER20 DNA MER1_type 1 210 -9 962 261 139 28 chr6 177300577 177301044 -11978510 - MLT1G LTR MaLR -71 519 1 677 225 97 47 chr6 177301449 177301707 -11977847 - LTR37B LTR ERV1 0 468 198 457 209 168 25 chr6 177301742 177302004 -11977550 + LTR10B LTR ERV1 1 296 -209 2352 115 0 6 chr6 177302764 177303078 -11976476 + AluSx SINE Alu 1 312 0 503 267 1 8 chr6 177303109 177303255 -11976299 + L1MC4 LINE L1 6623 6825 -1018 283 170 113 0 chr6 177303421 177303474 -11976080 + AluS SINE Alu 1 59 -244 1015 159 0 0 chr6 177303476 177303639 -11975915 - LTR47A LTR ERVL -289 163 1 599 289 64 27 chr6 177304827 177305156 -11974398 - LTR16C LTR ERVL 0 491 151 * 1194 165 63 16 chr6 177305145 177305400 -11974154 + MER39B LTR ERV1 370 636 -17 325 184 53 0 chr6 177305920 177305996 -11973558 - ERVL LTR ERVL -455 5309 5230 1723 191 28 11 chr6 177306025 177306380 -11973174 + MLT1A1 LTR MaLR 1 361 -4 834 188 265 16 chr6 177306380 177306625 -11972929 - MLT1C LTR MaLR -19 448 143 234 114 0 68 chr6 177306637 177306681 -11972873 - MLT1C LTR MaLR -222 168 128 234 114 0 68 chr6 177306684 177306728 -11972826 - MLT1B LTR MaLR -222 168 128 750 170 48 30 chr6 177306731 177306896 -11972658 - MLT1B LTR MaLR -222 168 1 499 315 42 13 chr6 177307524 177307762 -11971792 - ERVL LTR ERVL -1242 4522 4278 280 282 144 29 chr6 177308121 177308295 -11971259 - ERVL LTR ERVL -1896 3758 3565 325 276 15 67 chr6 177308339 177308473 -11971081 - ERVL LTR ERVL -2227 3537 3411 306 280 75 3 chr6 177308696 177308821 -11970733 - ERVL LTR ERVL -1926 3070 2976 598 168 186 0 chr6 177308822 177308935 -11970619 + AluJb SINE Alu 2 135 -177 536 113 0 0 chr6 177310037 177310117 -11969437 + MADE1 DNA Mariner 1 80 0 1110 317 122 10 chr6 177310478 177311160 -11968394 + L2 LINE L2 1063 1820 -1494 361 267 43 0 chr6 177311344 177311460 -11968094 + L2 LINE L2 1898 2018 -1296 2160 109 0 13 chr6 177311587 177311898 -11967656 - AluSc SINE Alu -2 307 1 3164 161 28 2 chr6 177311903 177312474 -11967080 - L1MA5A LINE L1 -1 6296 5711 907 294 203 16 chr6 177312541 177313341 -11966213 + L2 LINE L2 2366 3309 -4 350 218 40 48 chr6 177313423 177313547 -11966007 + MIR SINE MIR 90 212 -50 279 309 21 10 chr6 177314713 177314810 -11964744 - MIR SINE MIR -8 254 157 219 213 88 88 chr6 177314839 177314919 -11964635 - MIR3 SINE MIR -115 93 14 225 274 108 0 chr6 177319328 177319430 -11960124 - MER81 DNA DNA -1 113 1 252 306 0 0 chr6 177319714 177319786 -11959768 + C-rich Low_complexity Low_complexity 6 77 0 2765 32 3 0 chr6 177319929 177320239 -11959315 - AluY SINE Alu 0 311 1 186 103 0 0 chr6 177320462 177320491 -11959063 + (T)n Simple_repeat Simple_repeat 1 29 0 391 313 39 33 chr6 177321186 177321368 -11958186 + MIR SINE MIR 20 202 -60 475 268 79 55 chr6 177324272 177324654 -11954900 - MER92B LTR ERV1 0 636 34 190 418 42 13 chr6 177325041 177325280 -11954274 - MIR SINE MIR 0 262 17 2011 113 0 0 chr6 177326354 177326610 -11952944 + AluSx SINE Alu 1 256 -56 24 0 0 0 chr6 177327050 177327074 -11952480 + AT_rich Low_complexity Low_complexity 1 24 0 300 222 83 19 chr6 177327200 177327308 -11952246 + MIR SINE MIR 131 245 -17 273 273 0 0 chr6 177327314 177327369 -11952185 + (CA)n Simple_repeat Simple_repeat 1 55 0 332 264 11 28 chr6 177327372 177327554 -11952000 + (CATA)n Simple_repeat Simple_repeat 1 179 0 240 224 0 0 chr6 177327593 177327660 -11951894 + (CA)n Simple_repeat Simple_repeat 1 67 0 1041 137 20 0 chr6 177328580 177328733 -11950821 + FAM SINE Alu 10 165 -20 186 259 35 0 chr6 177329128 177329186 -11950368 + L2 LINE L2 3213 3272 0 2670 71 35 16 chr6 177329205 177329573 -11949981 + THE1C LTR MaLR 1 375 0 666 165 0 0 chr6 177329674 177329777 -11949777 - FAM SINE Alu -19 166 64 678 157 0 0 chr6 177330223 177330325 -11949229 - AluS SINE Alu -210 102 1 1028 238 85 45 chr6 177330401 177330816 -11948738 - MLT1E2 LTR MaLR -189 465 1 905 363 99 34 chr6 177330978 177331084 -11948470 - L3 LINE CR1 -617 960 862 2269 127 0 6 chr6 177331084 177331398 -11948156 - AluSx SINE Alu 0 312 1 905 363 99 34 chr6 177331398 177332019 -11947535 - L3 LINE CR1 -715 862 186 2934 251 50 29 chr6 177334357 177335040 -11944514 - L1ME1 LINE L1 -5 6230 5563 315 49 0 0 chr6 177335040 177335081 -11944473 + (TG)n Simple_repeat Simple_repeat 2 42 0 2135 109 3 0 chr6 177335081 177335365 -11944189 - AluSx SINE Alu -27 285 1 2934 251 50 29 chr6 177335365 177336430 -11943124 - L1ME1 LINE L1 -671 5564 4443 401 53 0 18 chr6 177336438 177336495 -11943059 + (TA)n Simple_repeat Simple_repeat 1 56 0 400 306 38 6 chr6 177336614 177336774 -11942780 - L1ME1 LINE L1 -6197 199 35 269 333 25 50 chr6 177337621 177337819 -11941735 + L2 LINE L2 2869 3061 -211 703 200 20 7 chr6 177338273 177338423 -11941131 + MER58B DNA MER1_type 189 340 -1 329 353 7 22 chr6 177340622 177340761 -11938793 + L2 LINE L2 3173 3309 -4 25 65 0 0 chr6 177340805 177340851 -11938703 + AT_rich Low_complexity Low_complexity 1 46 0 2471 100 3 0 chr6 177341172 177341482 -11938072 + AluSx SINE Alu 1 311 -1 895 156 97 10 chr6 177342603 177342920 -11936634 - MLT1B LTR MaLR -3 387 1 340 300 110 21 chr6 177344085 177344322 -11935232 - MLT1J LTR MaLR -176 335 78 23 0 0 0 chr6 177345173 177345196 -11934358 + AT_rich Low_complexity Low_complexity 1 23 0 257 273 198 18 chr6 177345885 177346112 -11933442 + MLT1J2 LTR MaLR 13 280 -166 1232 269 39 16 chr6 177349596 177349982 -11929572 - MLT2C1 LTR ERVL -2 395 1 253 260 153 0 chr6 177350035 177350204 -11929350 - Charlie8 DNA MER1_type -996 1421 115 205 298 0 0 chr6 177350487 177350534 -11929020 + C-rich Low_complexity Low_complexity 2 48 0 448 278 49 31 chr6 177351015 177351177 -11928377 + MIR SINE MIR 31 195 -67 349 236 132 90 chr6 177351685 177351865 -11927689 - MIR SINE MIR -62 146 3 240 188 0 0 chr6 177352333 177352381 -11927173 - MER63 DNA MER1_type -35 1027 980 479 186 73 65 chr6 177352384 177352508 -11927046 - MER63 DNA MER1_type -311 751 1 1657 209 39 25 chr6 177352584 177352642 -11926912 + MLT1A1 LTR MaLR 2 58 -307 1728 154 40 30 chr6 177352642 177352941 -11926613 + AluSx SINE Alu 1 302 -10 1657 209 39 25 chr6 177352941 177353241 -11926313 + MLT1A1 LTR MaLR 58 365 0 391 289 44 69 chr6 177353257 177353416 -11926138 + MIR SINE MIR 19 173 -89 1353 226 88 14 chr6 177353572 177353935 -11925619 - MSTD LTR MaLR -6 390 1 279 344 47 6 chr6 177354398 177354569 -11924985 - MIR SINE MIR -52 210 30 3163 198 39 15 chr6 177355023 177355735 -11923819 + L1MB3 LINE L1 5445 6173 -10 406 249 231 12 chr6 177356717 177356890 -11922664 - MIR SINE MIR -6 256 46 363 304 22 29 chr6 177356905 177357043 -11922511 + MER5B DNA MER1_type 1 137 -41 291 276 86 0 chr6 177361114 177361230 -11918324 + L2 LINE L2 3187 3312 -1 441 363 28 14 chr6 177361620 177361835 -11917719 + MIR SINE MIR 28 245 -17 505 350 30 0 chr6 177361992 177362189 -11917365 - MIR SINE MIR -1 261 59 839 176 88 0 chr6 177363188 177363336 -11916218 - FRAM SINE Alu -7 169 9 1499 265 64 38 chr6 177363524 177364046 -11915508 - MER77 LTR ERV1 -4 601 87 180 282 100 71 chr6 177364111 177364181 -11915373 - L2 LINE L2 -2 3311 3245 4326 114 24 2 chr6 177364181 177364802 -11914752 - MER41B LTR ERV1 0 635 1 180 282 100 71 chr6 177364802 177364901 -11914653 - L2 LINE L2 -68 3245 3137 2751 124 17 19 chr6 177365048 177365509 -11914045 - LTR46 LTR ERV1 0 460 1 180 0 0 0 chr6 177365813 177365833 -11913721 + (A)n Simple_repeat Simple_repeat 1 20 0 3683 155 37 33 chr6 177365939 177366663 -11912891 + LTR8A LTR ERV1 1 727 0 280 297 72 0 chr6 177367201 177367312 -11912242 - L2 LINE L2 -2 3311 3193 818 119 157 0 chr6 177368177 177368311 -11911243 + MSTA LTR MaLR 1 155 -273 1771 162 7 0 chr6 177369928 177370200 -11909354 + AluJo SINE Alu 24 297 -15 268 158 70 29 chr6 177371618 177371789 -11907765 + (CA)n Simple_repeat Simple_repeat 2 179 0 256 177 61 24 chr6 177371878 177372042 -11907512 + (CA)n Simple_repeat Simple_repeat 2 171 0 237 159 50 66 chr6 177372114 177372296 -11907258 + (CA)n Simple_repeat Simple_repeat 2 180 0 1656 140 0 0 chr6 177375377 177375613 -11903941 + AluSg/x SINE Alu 77 312 0 1873 164 37 0 chr6 177375766 177376128 -11903426 + AluJb SINE Alu 1 373 0 222 264 83 0 chr6 177376866 177376938 -11902616 - MIR SINE MIR -156 106 29 3845 153 69 8 chr6 177377006 177377746 -11901808 - LTR1 LTR ERV1 0 785 1 186 189 0 0 chr6 177378138 177378175 -11901379 + (CA)n Simple_repeat Simple_repeat 2 38 0 180 352 63 49 chr6 177380138 177380280 -11899274 - L3 LINE CR1 -784 793 650 23 68 0 0 chr6 177383660 177383704 -11895850 + AT_rich Low_complexity Low_complexity 1 44 0 1805 62 0 0 chr6 177386504 177386745 -11892809 - L1PA5 LINE L1 -2 6152 5912 227 252 15 99 chr6 177387123 177387254 -11892300 + MIR SINE MIR 132 251 -11 256 369 104 14 chr6 177387406 177387541 -11892013 + MIR SINE MIR 21 185 -77 1012 161 14 32 chr6 177387541 177387759 -11891795 + MER20 DNA MER1_type 4 217 -2 256 369 104 14 chr6 177387759 177387845 -11891709 + MIR SINE MIR 185 262 0 2914 117 29 33 chr6 177390431 177390718 -11888836 + MER1A DNA MER1_type 44 330 -2372 1802 116 0 24 chr6 177390718 177390969 -11888585 + AluSg SINE Alu 1 245 -65 2914 117 29 33 chr6 177390969 177391169 -11888385 + MER1A DNA MER1_type 330 529 0 2239 123 3 0 chr6 177391211 177391512 -11888042 + AluSx SINE Alu 1 302 -10 496 317 65 35 chr6 177391538 177391828 -11887726 - L1MEd LINE L1 -3692 2437 2139 609 244 270 28 chr6 177392217 177392713 -11886841 - L2 LINE L2 -17 3296 2714 376 316 123 0 chr6 177392749 177392898 -11886656 - HAL1 LINE L1 -985 1522 1344 1964 115 77 3 chr6 177392898 177393185 -11886369 - AluSx SINE Alu -4 308 1 376 316 123 0 chr6 177393185 177393222 -11886332 - HAL1 LINE L1 -1163 1344 1313 887 157 5 31 chr6 177393229 177393420 -11886134 + MER53 DNA DNA 2 187 -2 875 324 115 33 chr6 177393423 177394234 -11885320 - L1MEd LINE L1 -4913 1206 330 465 194 20 0 chr6 177395329 177395427 -11884127 + AluJ/FLAM SINE Alu 2 101 -211 371 125 16 0 chr6 177395433 177395497 -11884057 + AluJ/FLAM SINE Alu 37 101 -201 1505 156 25 0 chr6 177395503 177395747 -11883807 + AluJo SINE Alu 37 286 -26 204 40 0 0 chr6 177395750 177395775 -11883779 + (CA)n Simple_repeat Simple_repeat 2 26 0 2275 117 3 0 chr6 177395808 177396107 -11883447 + AluSx SINE Alu 1 300 -12 1549 202 65 0 chr6 177396709 177397050 -11882504 - MLT1A1 LTR MaLR 0 365 3 581 163 30 94 chr6 177397269 177397408 -11882146 + MER53 DNA DNA 1 125 -64 2261 122 3 0 chr6 177397408 177397712 -11881842 + AluSx SINE Alu 1 305 -7 581 163 30 94 chr6 177397712 177397774 -11881780 + MER53 DNA DNA 125 189 0 24 32 0 0 chr6 177398065 177398096 -11881458 + AT_rich Low_complexity Low_complexity 1 31 0 13011 144 24 23 chr6 177399434 177402850 -11876704 - L1P3 LINE L1 -3018 3443 6 682 226 0 0 chr6 177402858 177402995 -11876559 + Tigger7 DNA MER2_type 2444 2580 -7 299 314 26 46 chr6 177403104 177403257 -11876297 + MIR3 SINE MIR 8 157 -51 1496 299 134 24 chr6 177403312 177404249 -11875305 + L2 LINE L2 1714 2754 -560 1132 256 62 46 chr6 177404254 177404708 -11874846 + MLT1C LTR MaLR 6 466 -1 206 295 31 54 chr6 177404708 177404837 -11874717 + L2 LINE L2 2749 2874 -440 229 310 28 49 chr6 177404971 177405113 -11874441 + L2 LINE L2 3175 3313 0 227 244 0 0 chr6 177409979 177410020 -11869534 + G-rich Low_complexity Low_complexity 6 46 0 250 263 11 68 chr6 177410075 177410265 -11869289 + G-rich Low_complexity Low_complexity 1 179 0 199 296 153 10 chr6 177410639 177410737 -11868817 + MIR SINE MIR 40 151 -57 182 295 33 0 chr6 177410765 177410826 -11868728 + MIR3 SINE MIR 123 185 -23 581 215 22 0 chr6 177412101 177412236 -11867318 + MLT1B LTR MaLR 1 138 -252 268 233 78 11 chr6 177412256 177412346 -11867208 + MLT1B LTR MaLR 294 389 -1 225 0 0 0 chr6 177413855 177413880 -11865674 + (A)n Simple_repeat Simple_repeat 1 25 0 440 266 0 11 chr6 177615105 177615282 -11664272 + (CACTA)n Simple_repeat Simple_repeat 2 176 0 1582 132 83 9 chr6 177615339 177615665 -11663889 - Tigger3(Golem) DNA MER2_type -396 2633 2284 574 210 0 0 chr6 177615673 177615773 -11663781 - Tigger3(Golem) DNA MER2_type -2929 100 1 567 284 12 5 chr6 177615845 177616055 -11663499 - MIR SINE MIR -23 239 30 239 230 16 63 chr6 177616303 177616429 -11663125 + (TG)n Simple_repeat Simple_repeat 1 120 0 223 203 34 17 chr6 177616828 177616887 -11662667 - MIR SINE MIR -136 126 67 855 132 34 98 chr6 177616949 177617012 -11662542 + L1M4 LINE L1 5611 5676 -508 2305 111 3 0 chr6 177617012 177617318 -11662236 + AluSc SINE Alu 1 307 -2 855 132 34 98 chr6 177617318 177617459 -11662095 + L1M4 LINE L1 5676 5802 -382 280 317 33 33 chr6 177617565 177617685 -11661869 - MLT1J LTR MaLR -235 276 157 232 218 103 0 chr6 177618607 177618685 -11660869 + L1MC4 LINE L1 6618 6703 -1339 * 247 276 0 51 chr6 177618673 177618771 -11660783 + L1MC4 LINE L1 6614 6706 -1336 305 287 0 43 chr6 177618800 177618894 -11660660 - L1MC4 LINE L1 -1339 6703 6614 687 219 0 0 chr6 177618903 177619081 -11660473 + (TA)n Simple_repeat Simple_repeat 1 178 0 269 189 21 74 chr6 177619090 177619185 -11660369 + L1MC4 LINE L1 6614 6703 -1339 596 176 46 9 chr6 177619192 177619300 -11660254 + Tigger7 DNA MER2_type 2376 2487 0 * 2144 207 9 8 chr6 177619300 177619751 -11659803 - MER54B LTR ERVL -276 517 1 372 43 0 0 chr6 177619957 177620003 -11659551 + (TTA)n Simple_repeat Simple_repeat 3 48 0 1861 53 4 0 chr6 177620003 177620231 -11659323 - L1PA7 LINE L1 -18 6136 5908 2454 89 0 6 chr6 177620485 177620799 -11658755 - AluSx SINE Alu 0 312 1 335 45 0 0 chr6 177621722 177621766 -11657788 - L1MA4A LINE L1 -234 6771 6728 582 111 0 44 chr6 177622300 177622390 -11657164 - L1PA8A LINE L1 -2 6129 6044 3752 78 22 16 chr6 177622390 177623172 -11656382 - L1PA8A LINE L1 -372 5759 4975 15453 181 41 14 chr6 177623617 177626417 -11653137 - L1MA4A LINE L1 -295 6710 3988 1806 146 3 59 chr6 177626417 177626740 -11652814 - AluSx SINE Alu -1 311 7 15453 181 41 14 chr6 177626740 177628126 -11651428 - L1MA4A LINE L1 -3017 3988 2641 245 29 0 29 chr6 177628126 177628161 -11651393 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1941 164 0 3 chr6 177628168 177628461 -11651093 - AluSx SINE Alu -20 292 1 15453 181 41 14 chr6 177628461 177630783 -11648771 - L1MA4A LINE L1 -4369 2636 2 306 244 35 52 chr6 177630946 177631061 -11648493 - MIR SINE MIR -116 146 34 576 166 158 7 chr6 177632477 177632616 -11646938 - L1ME1 LINE L1 -6 6160 6001 3246 261 83 72 chr6 177632619 177633093 -11646461 - L1MCc LINE L1 -4163 2796 2329 1987 142 6 19 chr6 177633093 177633409 -11646145 - AluSx SINE Alu 0 312 1 3246 261 83 72 chr6 177633409 177634865 -11644689 - L1MCc LINE L1 -4630 2329 632 2357 82 0 0 chr6 177634865 177635178 -11644376 - AluY SINE Alu 0 313 1 3246 261 83 72 chr6 177635178 177635818 -11643736 - L1MCc LINE L1 -6327 632 1 3914 123 122 2 chr6 177636508 177637149 -11642405 - MER72 LTR ERV1 0 722 5 402 242 42 142 chr6 177638897 177639257 -11640297 - L2 LINE L2 -4 3309 2986 808 192 69 39 chr6 177641087 177641290 -11638264 - MLT1C LTR MaLR -258 209 1 2598 189 91 73 chr6 177641719 177642433 -11637121 + LTR8A LTR ERV1 1 727 0 364 305 143 0 chr6 177643241 177643395 -11636159 + LTR33 LTR ERVL 1 176 -345 462 276 31 25 chr6 177643541 177643704 -11635850 + LTR33 LTR ERVL 344 507 -14 2187 124 0 3 chr6 177645450 177645757 -11633797 + AluSx SINE Alu 1 306 -6 681 37 0 0 chr6 177645883 177645964 -11633590 + L1P LINE L1 3978 4058 -2088 264 320 52 52 chr6 177646032 177646204 -11633350 - MIR SINE MIR -78 184 13 596 256 68 14 chr6 177647661 177647880 -11631674 + MLT1H LTR MaLR 75 305 -244 538 261 32 45 chr6 177647902 177648059 -11631495 + MLT1H LTR MaLR 441 595 0 247 303 34 67 chr6 177648524 177648643 -11630911 + MIR3 SINE MIR 58 172 -36 407 235 111 1 chr6 177650847 177651071 -11628483 - MER57B LTR ERV1 0 403 131 8604 97 50 15 chr6 177651081 177651275 -11628279 + HSMAR1 DNA Mariner 9 195 -1092 2246 103 0 0 chr6 177651275 177651557 -11627997 - AluSg SINE Alu -23 287 6 8604 97 50 15 chr6 177651557 177652597 -11626957 + HSMAR1 DNA Mariner 195 1287 0 531 293 37 5 chr6 177653012 177653200 -11626354 - MIR SINE MIR -21 241 48 333 261 0 96 chr6 177653796 177653911 -11625643 + MER81 DNA DNA 1 104 -10 4957 220 56 14 chr6 177654404 177655812 -11623742 - L1MEc LINE L1 -2505 3710 2243 2036 251 56 7 chr6 177655811 177656364 -11623190 - L1MEc LINE L1 -5781 615 36 * 452 186 16 65 chr6 177660824 177660948 -11618606 - MIR3 SINE MIR -47 161 44 2469 75 0 0 chr6 177661777 177662071 -11617483 + AluSg SINE Alu 14 307 -3 189 0 0 0 chr6 177663059 177663080 -11616474 + (T)n Simple_repeat Simple_repeat 1 21 0 855 231 58 5 chr6 177664002 177664210 -11615344 - MER20 DNA MER1_type 0 219 1 3329 96 14 0 chr6 177665122 177665561 -11613993 - MLT2A2 LTR ERVL -8 445 1 271 270 45 34 chr6 177665879 177665968 -11613586 - L2 LINE L2 0 3272 3183 240 319 32 11 chr6 177666016 177666110 -11613444 - MER5B DNA MER1_type -39 139 44 432 299 124 11 chr6 177668295 177668472 -11611082 + MER117 DNA MER1_type 1 197 0 1761 98 106 0 chr6 177668478 177668732 -11610822 + AluSq SINE Alu 22 302 -11 191 243 286 0 chr6 177669241 177669311 -11610243 + MIR3 SINE MIR 67 156 -52 212 268 61 73 chr6 177669784 177669948 -11609606 - L3b LINE CR1 -258 1325 1164 206 294 0 0 chr6 177671119 177671170 -11608384 + C-rich Low_complexity Low_complexity 4 54 0 766 301 77 33 chr6 177671331 177671870 -11607684 - MLT1K LTR MaLR 0 588 10 1466 140 106 0 chr6 177672163 177672399 -11607155 + AluSx SINE Alu 40 300 -12 2042 110 0 48 chr6 177674156 177674466 -11605088 + AluSq SINE Alu 1 295 -18 272 349 0 0 chr6 177674474 177674557 -11604997 - MIR SINE MIR -13 249 167 339 248 88 0 chr6 177674559 177674666 -11604888 + MIR SINE MIR 52 166 -81 209 320 177 20 chr6 177674643 177674790 -11604764 - L2 LINE L2 -203 3110 2941 * 2641 222 72 66 chr6 177674790 177675755 -11603799 + Zaphod DNA AcHobo 22 991 -3040 1014 159 105 126 chr6 177675756 177676176 -11603378 + Zaphod DNA AcHobo 3599 4009 -22 1385 251 114 17 chr6 177676215 177676801 -11602753 + MER76 LTR ERV 44 686 -2 1565 181 73 0 chr6 177676831 177677118 -11602436 - MER1B DNA MER1_type 0 339 32 786 256 113 4 chr6 177677123 177677397 -11602157 - L2 LINE L2 -561 2753 2450 181 243 0 0 chr6 177677395 177677432 -11602122 + MIR SINE MIR 225 261 -1 * 2346 201 50 8 chr6 177678012 177678490 -11601064 + MLT1D LTR MaLR 6 503 -2 425 285 125 25 chr6 177678824 177679024 -11600530 - MLT1J LTR MaLR -175 336 117 416 299 152 5 chr6 177679115 177679339 -11600215 + MIR SINE MIR 4 260 -2 22 0 9 0 chr6 177679372 177679435 -11600119 + AT_rich Low_complexity Low_complexity 1 22 0 456 233 0 10 chr6 177679438 177679541 -11600013 + MER94 DNA DNA 32 133 -1 340 313 138 31 chr6 177679958 177680348 -11599206 + L1MC/D LINE L1 5378 5809 -312 297 283 9 112 chr6 177680961 177681245 -11598309 - L1ME LINE L1 -5432 651 387 228 325 57 25 chr6 177681246 177681403 -11598151 - L1ME LINE L1 -5589 481 320 8373 214 51 48 chr6 177681446 177683746 -11595808 + L1ME1 LINE L1 2850 5162 -1004 2175 88 51 0 chr6 177683746 177684042 -11595512 + AluY SINE Alu 1 311 0 8373 214 51 48 chr6 177684042 177685032 -11594522 + L1ME1 LINE L1 5162 6148 -18 33261 102 11 64 chr6 177685093 177691337 -11588217 + L1PA6 LINE L1 12 5914 -240 898 147 45 13 chr6 177691437 177691593 -11587961 + MER54B LTR ERVL 631 791 -2 567 157 24 0 chr6 177692058 177692141 -11587413 + AluSq SINE Alu 2 86 -227 1729 87 4 4 chr6 177692371 177692601 -11586953 + AluSq SINE Alu 83 312 -1 290 286 68 48 chr6 177693651 177693798 -11585756 + MIR3 SINE MIR 36 185 -23 554 283 17 56 chr6 177693931 177694164 -11585390 + LTR33 LTR ERVL 1 224 -297 253 211 11 89 chr6 177694293 177694320 -11585234 + LTR33 LTR ERVL 424 452 -69 2504 156 122 15 chr6 177694320 177694788 -11584766 + LTR44 LTR ERV1 1 518 -1 253 211 11 89 chr6 177694788 177694850 -11584704 + LTR33 LTR ERVL 452 506 -15 715 66 33 49 chr6 177695173 177695356 -11584198 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 462 61 35 44 chr6 177695372 177695486 -11584068 + (TAGA)n Simple_repeat Simple_repeat 1 113 0 354 294 32 32 chr6 177696347 177696473 -11583081 - L2 LINE L2 0 3313 3188 21 71 0 0 chr6 177696511 177696553 -11583001 + AT_rich Low_complexity Low_complexity 1 42 0 215 338 48 61 chr6 177697043 177697271 -11582283 + L2 LINE L2 3085 3309 -4 2329 99 0 6 chr6 177698966 177699278 -11580276 - AluSg SINE Alu 0 310 1 448 294 24 35 chr6 177699286 177699456 -11580098 - MER58C DNA MER1_type -11 204 37 503 315 190 20 chr6 177699494 177699846 -11579708 - L3 LINE CR1 -125 1452 1041 2338 114 57 20 chr6 177700277 177700628 -11578926 + THE1B LTR MaLR 1 364 0 2258 97 3 0 chr6 177701324 177701612 -11577942 + AluSp SINE Alu 1 289 -24 186 133 0 0 chr6 177702142 177702172 -11577382 + (TA)n Simple_repeat Simple_repeat 2 31 0 299 183 197 0 chr6 177703792 177703863 -11575691 + MLT2D LTR ERVL 1 85 -329 226 233 50 0 chr6 177703898 177703958 -11575596 - FLAM_A SINE Alu 0 133 71 1562 151 0 0 chr6 177704053 177704285 -11575269 - AluJo SINE Alu -80 232 1 1453 187 16 0 chr6 177704287 177704538 -11575016 + MLT2D LTR ERVL 102 356 -58 525 71 0 0 chr6 177704540 177704610 -11574944 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 * 1000 109 18 0 chr6 177704609 177704774 -11574780 + (TGGA)n Simple_repeat Simple_repeat 2 169 0 198 0 0 0 chr6 177704777 177704799 -11574755 + (CATA)n Simple_repeat Simple_repeat 3 24 0 1186 74 6 6 chr6 177704826 177705002 -11574552 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 207 0 0 0 chr6 177705025 177705048 -11574506 + (CATA)n Simple_repeat Simple_repeat 2 24 0 764 194 4 8 chr6 177705049 177705298 -11574256 + (TAGA)n Simple_repeat Simple_repeat 1 248 0 853 161 24 0 chr6 177705324 177705624 -11573930 + (TAGA)n Simple_repeat Simple_repeat 1 307 0 304 307 55 8 chr6 177706453 177706580 -11572974 + MIR SINE MIR 81 213 -49 201 81 27 27 chr6 177706925 177706962 -11572592 + (GA)n Simple_repeat Simple_repeat 2 38 0 974 97 8 0 chr6 177707582 177707706 -11571848 - AluSq/x SINE Alu -188 125 1 262 0 26 26 chr6 177708198 177708237 -11571317 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2292 79 0 0 chr6 177708239 177708517 -11571037 - AluSg SINE Alu -32 278 1 2156 260 8 28 chr6 177709488 177710099 -11569455 + L1ME1 LINE L1 5563 6161 -5 1226 94 0 0 chr6 177710189 177710362 -11569192 - AluSp SINE Alu 0 306 134 2317 82 0 0 chr6 177710362 177710687 -11568867 - AluY SINE Alu 0 311 1 253 306 45 22 chr6 177710739 177710873 -11568681 - L1ME1 LINE L1 -1 6165 6029 21 0 0 0 chr6 177711560 177711581 -11567973 + AT_rich Low_complexity Low_complexity 1 21 0 1649 170 14 34 chr6 177712055 177712349 -11567205 - AluJo SINE Alu -24 288 1 355 344 0 0 chr6 177715049 177715174 -11564380 - MARNA DNA Mariner -187 399 275 263 319 14 0 chr6 177715862 177715931 -11563623 + L2 LINE L2 3122 3191 -81 583 209 181 33 chr6 177716681 177716863 -11562691 - MER63A DNA MER1_type 0 210 2 354 254 40 64 chr6 177718382 177718555 -11560999 - MIR SINE MIR -10 252 84 410 212 0 0 chr6 177718558 177718643 -11560911 - L2 LINE L2 0 3313 3229 766 346 46 65 chr6 177718890 177719435 -11560119 - L2 LINE L2 -410 2904 2379 1838 67 0 9 chr6 177719435 177719660 -11559894 - AluY SINE Alu -9 302 80 766 346 46 65 chr6 177719660 177719943 -11559611 - L2 LINE L2 -935 2379 2092 306 265 112 10 chr6 177722322 177722420 -11557134 - MIR SINE MIR -67 141 34 244 184 0 26 chr6 177722488 177722564 -11556990 + (TCCA)n Simple_repeat Simple_repeat 1 74 0 490 196 78 0 chr6 177723797 177723899 -11555655 + L1P LINE L1 2883 2992 -3154 204 67 0 0 chr6 177725224 177725254 -11554300 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 2331 92 0 0 chr6 177725560 177725852 -11553702 + AluSc SINE Alu 1 292 -17 1699 169 39 3 chr6 177726413 177726697 -11552857 - AluJo SINE Alu -18 294 1 183 184 0 0 chr6 177726783 177726821 -11552733 + A-rich Low_complexity Low_complexity 5 42 0 199 313 50 66 chr6 177728506 177728578 -11550976 - MIR SINE MIR -53 209 137 2228 114 15 63 chr6 177728578 177728972 -11550582 + THE1C LTR MaLR 1 375 0 199 313 50 66 chr6 177728972 177729081 -11550473 - MIR SINE MIR -125 137 31 28 0 0 0 chr6 177730350 177730378 -11549176 + AT_rich Low_complexity Low_complexity 1 28 0 2566 148 63 2 chr6 177730849 177731308 -11548246 + L1MB7 LINE L1 5691 6177 -7 3822 78 6 4 chr6 177731332 177731846 -11547708 - L1PA10 LINE L1 -1 6167 5653 528 250 47 0 chr6 177731935 177732083 -11547471 + L1MA10 LINE L1 6180 6334 0 420 161 12 0 chr6 177733606 177733687 -11545867 - MER53 DNA DNA -13 176 95 289 274 11 28 chr6 177733969 177734148 -11545406 + (TGG)n Simple_repeat Simple_repeat 2 177 0 1197 196 58 101 chr6 177734557 177734904 -11544650 - MER58B DNA MER1_type -8 333 2 2344 56 42 0 chr6 177735436 177735720 -11543834 + AluY SINE Alu 1 296 -15 256 245 22 37 chr6 177735829 177735932 -11543622 + L1ME4a LINE L1 5706 5812 -309 306 250 54 48 chr6 177736008 177736176 -11543378 + L1ME4a LINE L1 5934 6102 -19 420 193 290 0 chr6 177736373 177736518 -11543036 + MER5A DNA MER1_type 3 189 0 22 0 0 0 chr6 177736584 177736606 -11542948 + AT_rich Low_complexity Low_complexity 1 22 0 184 239 0 0 chr6 177738302 177738348 -11541206 - L2 LINE L2 -1 3312 3267 388 296 89 15 chr6 177739053 177739256 -11540298 + MIR SINE MIR 29 246 -16 2864 7 0 0 chr6 177742421 177742723 -11536831 - AluYb8 SINE Alu -16 302 1 693 238 0 35 chr6 177743266 177743438 -11536116 - L1PB4 LINE L1 0 6156 5991 25 0 0 0 chr6 177744738 177744763 -11534791 + AT_rich Low_complexity Low_complexity 1 25 0 2058 136 7 3 chr6 177744842 177745150 -11534404 + AluSx SINE Alu 1 309 -3 25 31 0 0 chr6 177745242 177745274 -11534280 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 177745413 177745434 -11534120 + AT_rich Low_complexity Low_complexity 1 21 0 1476 103 40 9 chr6 177745879 177746102 -11533452 - MER30 DNA MER1_type 0 230 1 452 130 0 13 chr6 177746727 177746804 -11532750 - L1 LINE L1 -3118 3028 2953 1195 278 49 36 chr6 177746804 177747577 -11531977 - L2 LINE L2 -43 3270 2487 453 243 26 13 chr6 177747736 177747888 -11531666 - L2 LINE L2 -885 2429 2276 1003 198 108 145 chr6 177747893 177748384 -11531170 - MLT1F1 LTR MaLR -2 565 93 978 238 11 31 chr6 177748443 177748659 -11530895 - L2 LINE L2 -1141 2173 1963 305 314 7 29 chr6 177748659 177748796 -11530758 - MER94 DNA DNA 0 134 1 978 238 11 31 chr6 177748796 177748865 -11530689 - L2 LINE L2 -1351 1963 1894 181 341 0 12 chr6 177749573 177749655 -11529899 - MIR SINE MIR -26 236 156 433 248 0 0 chr6 177749929 177750042 -11529512 - L1PB4 LINE L1 0 6156 6044 743 178 0 0 chr6 177750090 177750208 -11529346 + FLAM_C SINE Alu 2 119 -24 4887 139 17 7 chr6 177750233 177751478 -11528076 - L1MA4A LINE L1 -232 6071 4814 225 337 61 0 chr6 177751839 177751937 -11527617 - MIR SINE MIR -8 254 151 363 271 68 23 chr6 177752312 177752445 -11527109 - MIR SINE MIR -105 157 19 2081 104 59 0 chr6 177753742 177753859 -11525695 + AluY SINE Alu 1 110 -201 423 0 0 0 chr6 177753859 177753906 -11525648 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 2081 104 59 0 chr6 177753906 177754075 -11525479 + AluY SINE Alu 110 304 -7 385 254 173 19 chr6 177754129 177754499 -11525055 + L1M4 LINE L1 4342 4768 -1378 2214 123 7 3 chr6 177754959 177755267 -11524287 - AluSq SINE Alu -4 309 1 3021 110 3 6 chr6 177755458 177755996 -11523558 - L1P5 LINE L1 -475 5676 5141 2247 65 3 19 chr6 177756019 177756326 -11523228 + L1PB1 LINE L1 5843 6144 -7 445 275 0 0 chr6 177756852 177757019 -11522535 + (TAGTG)n Simple_repeat Simple_repeat 5 171 0 2301 155 56 7 chr6 177757024 177757438 -11522116 + Tigger3(Golem) DNA MER2_type 2595 3028 -1 627 287 12 0 chr6 177758454 177758621 -11520933 + MIR SINE MIR 88 256 -6 196 295 85 8 chr6 177759216 177759345 -11520209 + L2 LINE L2 2955 3093 -179 1830 164 3 0 chr6 177759820 177760113 -11519441 + AluJb SINE Alu 1 294 -18 281 350 15 29 chr6 177760263 177760400 -11519154 - L2 LINE L2 0 3272 3138 212 97 0 0 chr6 177760728 177760759 -11518795 - MIR SINE MIR -115 147 117 864 167 78 39 chr6 177761689 177761893 -11517661 - MER51C LTR ERV1 0 640 429 205 345 132 37 chr6 177766283 177766579 -11512975 - L2 LINE L2 -6 3266 2943 21 36 0 0 chr6 177767492 177767520 -11512034 + AT_rich Low_complexity Low_complexity 1 28 0 585 261 121 6 chr6 177768692 177768897 -11510657 + MIR SINE MIR 15 245 -17 1495 144 70 25 chr6 177768953 177769237 -11510317 - AluJo SINE Alu -15 297 1 2170 84 3 19 chr6 177770576 177770885 -11508669 + AluY SINE Alu 1 304 -7 901 168 64 6 chr6 177771571 177771744 -11507810 - AluJb SINE Alu -18 294 112 774 109 0 0 chr6 177771891 177772001 -11507553 - AluJb SINE Alu -201 111 2 557 253 139 21 chr6 177774862 177775056 -11504498 + MIR SINE MIR 15 231 -31 2195 70 3 17 chr6 177775326 177775616 -11503938 + AluSx SINE Alu 1 288 -24 180 0 0 0 chr6 177775616 177775636 -11503918 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 505 263 141 0 chr6 177776155 177776311 -11503243 - MER45A DNA AcHobo 0 178 1 1500 184 0 0 chr6 177776701 177776968 -11502586 - L1 LINE L1 -2488 3658 3392 938 98 8 8 chr6 177777068 177777200 -11502354 + THE1C LTR MaLR 244 375 0 203 343 9 37 chr6 177777201 177777309 -11502245 - MIR SINE MIR -127 135 31 262 291 60 77 chr6 177778396 177778468 -11501086 - MIR SINE MIR -53 209 137 2224 114 15 63 chr6 177778468 177778862 -11500692 + THE1C LTR MaLR 1 375 0 262 291 60 77 chr6 177778862 177778971 -11500583 - MIR SINE MIR -125 137 31 28 0 0 0 chr6 177780240 177780268 -11499286 + AT_rich Low_complexity Low_complexity 1 28 0 2539 148 63 2 chr6 177780739 177781198 -11498356 + L1MB7 LINE L1 5691 6177 -7 3814 78 6 4 chr6 177781222 177781736 -11497818 - L1PA10 LINE L1 -1 6167 5653 529 250 47 0 chr6 177781825 177781973 -11497581 + L1MA10 LINE L1 6180 6334 0 414 161 12 0 chr6 177783496 177783577 -11495977 - MER53 DNA DNA -13 176 95 289 274 11 28 chr6 177783859 177784038 -11495516 + (TGG)n Simple_repeat Simple_repeat 2 177 0 1194 199 58 101 chr6 177784447 177784794 -11494760 - MER58B DNA MER1_type -8 333 2 2217 56 42 0 chr6 177785326 177785610 -11493944 + AluY SINE Alu 1 296 -15 255 245 22 37 chr6 177785719 177785822 -11493732 + L1ME4a LINE L1 5706 5812 -309 298 250 54 48 chr6 177785898 177786066 -11493488 + L1ME4a LINE L1 5934 6102 -19 422 193 290 0 chr6 177786263 177786408 -11493146 + MER5A DNA MER1_type 3 189 0 22 0 0 0 chr6 177786474 177786496 -11493058 + AT_rich Low_complexity Low_complexity 1 22 0 201 239 0 0 chr6 177788192 177788238 -11491316 - L2 LINE L2 -1 3312 3267 479 296 89 15 chr6 177788943 177789146 -11490408 + MIR SINE MIR 29 246 -16 21 36 0 0 chr6 177789894 177789922 -11489632 + GC_rich Low_complexity Low_complexity 1 28 0 710 233 0 35 chr6 177792841 177793013 -11486541 - L1PB4 LINE L1 0 6156 5991 23 33 0 0 chr6 177793140 177793170 -11486384 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr6 177794314 177794339 -11485215 + AT_rich Low_complexity Low_complexity 1 25 0 1926 140 7 3 chr6 177794418 177794726 -11484828 + AluSx SINE Alu 1 309 -3 23 33 0 0 chr6 177794818 177794848 -11484706 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 177794988 177795009 -11484545 + AT_rich Low_complexity Low_complexity 1 21 0 1423 126 31 0 chr6 177795455 177795678 -11483876 - MER30 DNA MER1_type 0 230 1 270 132 0 0 chr6 177798174 177798227 -11481327 + (TG)n Simple_repeat Simple_repeat 2 54 0 2367 78 0 7 chr6 177800098 177800407 -11479147 + AluY SINE Alu 1 307 -4 968 211 81 9 chr6 177802461 177802684 -11476870 - MER8 DNA MER2_type 0 239 1 332 370 33 6 chr6 177802733 177802914 -11476640 - MIR3 SINE MIR -2 206 21 228 344 31 21 chr6 177803765 177803861 -11475693 - MIR SINE MIR -43 219 123 2000 125 0 3 chr6 177804051 177804346 -11475208 + AluSx SINE Alu 1 294 -18 3486 66 0 35 chr6 177807077 177807131 -11472423 + MLT2A1 LTR ERVL 1 55 -389 2255 85 0 0 chr6 177807131 177807424 -11472130 + AluSx SINE Alu 1 293 -19 3486 66 0 35 chr6 177807424 177807821 -11471733 + MLT2A1 LTR ERVL 55 436 -8 286 294 88 46 chr6 177810336 177810514 -11469040 - MIR SINE MIR -67 195 9 233 236 337 0 chr6 177811511 177811600 -11467954 + MIR SINE MIR 25 143 -119 202 204 0 41 chr6 177812371 177812420 -11467134 - MER5A DNA MER1_type -3 186 140 210 311 50 8 chr6 177812987 177813106 -11466448 - MIR SINE MIR -118 144 21 232 260 0 0 chr6 177813570 177813620 -11465934 + GA-rich Low_complexity Low_complexity 2 51 0 2216 93 3 6 chr6 177814248 177814559 -11464995 + AluSp SINE Alu 3 312 -1 323 267 86 26 chr6 177816889 177817005 -11462549 - L2 LINE L2 0 3313 3191 235 385 44 0 chr6 177817755 177817890 -11461664 - MIR3 SINE MIR -28 180 40 414 279 149 7 chr6 177819658 177819812 -11459742 + L3b LINE CR1 1208 1383 -200 1827 172 28 46 chr6 177820140 177820535 -11459019 + MLT1B LTR MaLR 1 388 -2 21 0 0 0 chr6 177821065 177821086 -11458468 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr6 177821152 177821175 -11458379 + (TTG)n Simple_repeat Simple_repeat 2 24 0 369 266 149 7 chr6 177829103 177829257 -11450297 + L3b LINE CR1 1216 1391 -192 392 234 57 99 chr6 177830135 177830327 -11449227 - Charlie8 DNA MER1_type -2232 185 2 220 298 214 0 chr6 177830649 177830780 -11448774 + L2 LINE L2 2202 2360 -954 1548 164 3 49 chr6 177831220 177831525 -11448029 + AluJb SINE Alu 1 291 -21 237 250 62 0 chr6 177831634 177831698 -11447856 + L2 LINE L2 3246 3313 0 2106 120 150 5 chr6 177832130 177832504 -11447050 + MSTA LTR MaLR 1 428 0 242 252 97 84 chr6 177834127 177834282 -11445272 + MLT1K LTR MaLR 402 558 -30 2203 109 0 13 chr6 177834346 177834658 -11444896 + AluSx SINE Alu 1 308 -4 2463 57 0 13 chr6 177834720 177835035 -11444519 + AluY SINE Alu 1 311 0 559 276 56 85 chr6 177837579 177837992 -11441562 + MLT1J LTR MaLR 109 509 -2 353 266 0 0 chr6 177839116 177839195 -11440359 - L2 LINE L2 0 3313 3235 561 246 78 11 chr6 177839221 177839400 -11440154 - MIR SINE MIR -64 198 8 979 247 86 67 chr6 177839538 177839959 -11439595 + L2 LINE L2 1883 2311 -1003 208 317 73 0 chr6 177840008 177840090 -11439464 - L2 LINE L2 -1260 2054 1967 204 200 0 0 chr6 177840233 177840273 -11439281 + MIR SINE MIR 150 189 -73 207 231 19 0 chr6 177841910 177841962 -11437592 + L2 LINE L2 3201 3253 -19 5692 89 5 7 chr6 177842160 177842931 -11436623 + L1PA10 LINE L1 5399 6168 0 1369 188 208 40 chr6 177842972 177843371 -11436183 + MLT1C LTR MaLR 2 467 0 965 290 77 49 chr6 177843585 177843915 -11435639 - L2 LINE L2 0 3313 2993 2058 108 13 13 chr6 177843915 177844221 -11435333 - AluSx SINE Alu -6 306 1 965 290 77 49 chr6 177844221 177844590 -11434964 - L2 LINE L2 -320 2993 2571 980 242 118 16 chr6 177844724 177844987 -11434567 + L1MD1 LINE L1 5887 6190 -52 2140 177 75 0 chr6 177844987 177845399 -11434155 - MER65A LTR ERV1 0 445 3 980 242 118 16 chr6 177845399 177845457 -11434097 + L1MD1 LINE L1 6190 6241 -1 213 39 0 0 chr6 177847103 177847129 -11432425 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 560 255 33 20 chr6 177847145 177847298 -11432256 - MIR3 SINE MIR -7 201 47 182 234 21 106 chr6 177847375 177847469 -11432085 + MIR3 SINE MIR 97 182 -26 328 314 67 0 chr6 177848036 177848141 -11431413 + MIR SINE MIR 87 198 -64 25 90 0 0 chr6 177848389 177848456 -11431098 + AT_rich Low_complexity Low_complexity 1 67 0 360 161 0 0 chr6 177849474 177849530 -11430024 + MLT1D LTR MaLR 1 56 -449 * 937 185 107 19 chr6 177849525 177849730 -11429824 + MLT1D LTR MaLR 283 505 0 5390 200 71 16 chr6 177850206 177851539 -11428015 - Charlie1a DNA MER1_type 0 1455 50 25 0 0 0 chr6 177853661 177853686 -11425868 + GC_rich Low_complexity Low_complexity 1 25 0 249 241 9 37 chr6 177854053 177854161 -11425393 + G-rich Low_complexity Low_complexity 6 110 0 1877 142 0 19 chr6 177854989 177855307 -11424247 - AluJb SINE Alu 0 312 1 885 240 192 43 chr6 177855623 177856061 -11423493 + MLT1D LTR MaLR 3 505 0 406 228 22 11 chr6 177856423 177856515 -11423039 - L2 LINE L2 0 3313 3221 374 296 63 26 chr6 177856495 177856796 -11422758 - L2 LINE L2 -445 2869 2469 * 24 0 0 0 chr6 177858121 177858145 -11421409 + AT_rich Low_complexity Low_complexity 1 24 0 229 203 165 76 chr6 177858169 177858248 -11421306 - MIR SINE MIR -69 193 108 372 333 13 26 chr6 177858938 177859091 -11420463 - L2 LINE L2 -20 3252 3102 318 296 91 28 chr6 177859978 177860154 -11419400 - MIR SINE MIR -70 192 6 469 271 8 17 chr6 177861003 177861121 -11418433 + L2 LINE L2 3143 3259 -13 2365 123 85 15 chr6 177861192 177861592 -11417962 + MSTA LTR MaLR 1 428 0 182 222 0 22 chr6 177861907 177861952 -11417602 - L2 LINE L2 -1 3271 3228 2069 198 76 19 chr6 177862194 177862678 -11416876 - MLT1F LTR MaLR -30 512 1 886 108 151 0 chr6 177862856 177862995 -11416559 + MSTA LTR MaLR 269 428 0 856 179 13 0 chr6 177863124 177863280 -11416274 + AluJb SINE Alu 135 292 -20 1488 91 17 17 chr6 177863610 177863842 -11415712 - AluSx SINE Alu -10 302 71 648 62 0 0 chr6 177863934 177864014 -11415540 - AluSx SINE Alu -232 80 1 218 364 26 0 chr6 177864179 177864256 -11415298 - L2 LINE L2 -9 3263 3185 2074 135 138 26 chr6 177864410 177864795 -11414759 + MSTA LTR MaLR 1 428 0 230 152 43 0 chr6 177865596 177865642 -11413912 + (CATATA)n Simple_repeat Simple_repeat 2 49 0 228 353 17 8 chr6 177866096 177866215 -11413339 - L2 LINE L2 -597 2717 2598 1902 151 3 7 chr6 177866390 177866688 -11412866 + AluSx SINE Alu 2 298 -14 409 265 10 0 chr6 177866731 177866833 -11412721 + L1MEd LINE L1 597 699 -5420 744 279 81 31 chr6 177866950 177867740 -11411814 + L1MEd LINE L1 861 1731 -4579 2241 125 0 6 chr6 177867982 177868293 -11411261 - AluSx SINE Alu -3 309 1 1093 274 77 77 chr6 177868488 177869270 -11410284 + L1MEd LINE L1 2525 3309 -2820 2129 121 3 16 chr6 177869270 177869585 -11409969 + AluSq SINE Alu 1 311 -2 1093 274 77 77 chr6 177869585 177870321 -11409233 + L1MEd LINE L1 3308 4043 -2086 756 167 40 7 chr6 177870372 177870522 -11409032 - HsTC2 DNA Tc2 -1336 562 408 247 342 0 0 chr6 177872043 177872119 -11407435 - MLT1K LTR MaLR -510 78 3 2450 82 0 0 chr6 177872974 177873268 -11406286 + AluSg SINE Alu 1 294 -16 603 203 0 0 chr6 177873647 177873765 -11405789 + MLT1D LTR MaLR 381 498 -7 576 252 43 75 chr6 177873759 177874021 -11405533 + MLT1J2 LTR MaLR 67 302 -148 * 250 257 40 0 chr6 177874056 177874130 -11405424 + MLT1J1 LTR MaLR 355 431 -15 2337 130 62 33 chr6 177874355 177874872 -11404682 - MLT2A2 LTR ERVL 0 554 1 3385 206 6 5 chr6 177874885 177875530 -11404024 - MER82 DNA MER2_type -7 646 1 261 350 110 27 chr6 177875604 177875669 -11403885 + L2 LINE L2 2164 2222 -1092 2342 125 117 5 chr6 177875669 177876054 -11403500 + MSTA LTR MaLR 1 428 0 261 350 110 27 chr6 177876054 177876505 -11403049 + L2 LINE L2 2222 2723 -591 900 161 7 0 chr6 177876775 177876918 -11402636 + MSTD LTR MaLR 248 391 -5 192 280 75 28 chr6 177877327 177877434 -11402120 + L2 LINE L2 3147 3258 -14 1577 188 7 28 chr6 177877583 177877871 -11401683 + AluJo SINE Alu 11 292 -20 592 197 22 0 chr6 177878083 177878220 -11401334 - MER104 DNA Tc2 -6 174 35 1253 195 24 0 chr6 177878508 177878718 -11400836 + AluJb SINE Alu 87 301 -11 270 281 67 12 chr6 177878718 177878882 -11400672 + L1ME4a LINE L1 5740 5912 -209 1679 225 141 45 chr6 177879081 177879142 -11400412 + MLT2F LTR ERVL 1 55 -608 2372 113 39 11 chr6 177879142 177879506 -11400048 + THE1C LTR MaLR 1 374 -1 1679 225 141 45 chr6 177879506 177880004 -11399550 + MLT2F LTR ERVL 55 614 -49 313 125 57 0 chr6 177880053 177880141 -11399413 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 347 93 0 37 chr6 177880143 177880197 -11399357 + MLT2F LTR ERVL 612 663 0 284 280 0 91 chr6 177881644 177881691 -11397863 - LTR16A1 LTR ERVL 0 457 407 2655 109 5 8 chr6 177881691 177882067 -11397487 + THE1C LTR MaLR 1 375 0 284 280 0 91 chr6 177882067 177882162 -11397392 - LTR16A1 LTR ERVL -50 407 328 1109 121 6 0 chr6 177882985 177883159 -11396395 + MER5A DNA MER1_type 15 189 0 601 248 46 64 chr6 177883333 177883369 -11396185 - HAL1b LINE L1 -7 1341 1306 4930 162 19 13 chr6 177883369 177884240 -11395314 + L1MC1 LINE L1 5457 6333 0 601 248 46 64 chr6 177884240 177884627 -11394927 - HAL1b LINE L1 -42 1306 1186 219 204 19 19 chr6 177884778 177884832 -11394722 + CT-rich Low_complexity Low_complexity 2 55 0 300 228 105 26 chr6 177886172 177886286 -11393268 + MLT1H LTR MaLR 12 134 -415 3529 110 36 2 chr6 177889014 177889542 -11390012 + L1PA13 LINE L1 5608 6153 -10 1374 37 10 7 chr6 177889548 177889844 -11389710 + (GAAA)n Simple_repeat Simple_repeat 1 297 0 245 235 34 101 chr6 177889875 177889994 -11389560 - L2 LINE L2 -3 3269 3159 202 360 58 14 chr6 177891135 177891274 -11388280 - L2 LINE L2 -16 3256 3112 1712 175 42 42 chr6 177891767 177892145 -11387409 - MLT1B LTR MaLR -12 378 1 394 258 63 13 chr6 177892517 177892676 -11386878 - MER5A DNA MER1_type -22 167 1 514 301 46 9 chr6 177892801 177893020 -11386534 + MER115 DNA AcHobo 31 257 -436 331 277 18 27 chr6 177893318 177893430 -11386124 + Zaphod DNA AcHobo 3906 4016 -15 2414 89 0 0 chr6 177895800 177896102 -11383452 + AluSx SINE Alu 1 302 -10 460 323 76 29 chr6 177898049 177898628 -11380926 + L1ME4a LINE L1 5334 5939 -182 32 57 0 0 chr6 177898726 177898779 -11380775 + AT_rich Low_complexity Low_complexity 1 53 0 2517 101 34 17 chr6 177899218 177899576 -11379978 + THE1B LTR MaLR 1 364 0 2146 137 0 0 chr6 177900293 177900599 -11378955 + AluSx SINE Alu 1 306 -6 2031 109 3 40 chr6 177900911 177901239 -11378315 + AluSq SINE Alu 1 313 0 243 301 183 9 chr6 177903686 177903905 -11375649 - L2 LINE L2 -582 2732 2476 2349 141 5 8 chr6 177904053 177904429 -11375125 + THE1C LTR MaLR 1 375 0 3643 202 50 34 chr6 177906801 177907614 -11371940 - LTR1B LTR ERV1 0 826 1 495 235 30 42 chr6 177907767 177907933 -11371621 - MIR SINE MIR -47 215 52 686 206 0 0 chr6 177908515 177908646 -11370908 - L1MB7 LINE L1 -97 6087 5957 186 332 72 43 chr6 177909477 177909685 -11369869 - MIR SINE MIR -1 261 48 1900 129 0 0 chr6 177910340 177910595 -11368959 - AluSq SINE Alu -58 255 1 283 236 20 74 chr6 177911507 177911605 -11367949 + MIR SINE MIR 103 192 -70 2002 149 3 0 chr6 177911605 177911907 -11367647 + AluJo SINE Alu 1 303 -9 283 236 20 74 chr6 177911907 177911956 -11367598 + MIR SINE MIR 192 242 -20 2048 148 3 7 chr6 177912872 177913177 -11366377 + AluSx SINE Alu 1 304 -8 831 222 146 5 chr6 177913631 177913843 -11365711 - MLT1I LTR MaLR -5 404 163 198 91 0 0 chr6 177914038 177914071 -11365483 + (CTAAA)n Simple_repeat Simple_repeat 3 35 0 1343 244 99 48 chr6 177915024 177915487 -11364067 + MLT1J LTR MaLR 23 509 -2 617 211 286 6 chr6 177915541 177915716 -11363838 + MER58A DNA MER1_type 1 224 0 224 346 75 9 chr6 177916015 177916122 -11363432 + MIR SINE MIR 20 133 -75 361 237 75 11 chr6 177917017 177917110 -11362444 + L2 LINE L2 3199 3297 -16 578 252 64 50 chr6 177917833 177918051 -11361503 + MLT1L LTR MaLR 47 267 -348 942 171 16 16 chr6 177918221 177918408 -11361146 + AluJb SINE Alu 121 307 -5 865 136 0 8 chr6 177918651 177918783 -11360771 + AluSg SINE Alu 1 131 -179 319 321 28 39 chr6 177918783 177919243 -11360311 + L1MEd LINE L1 1094 1629 -861 21 0 0 0 chr6 177919281 177919302 -11360252 + AT_rich Low_complexity Low_complexity 1 21 0 1796 182 3 3 chr6 177919460 177919756 -11359798 + AluJb SINE Alu 1 296 -16 1278 256 193 24 chr6 177920085 177920742 -11358812 - LTR50 LTR ERVL -27 768 1 1319 305 81 13 chr6 177921056 177921670 -11357884 - ERVL LTR ERVL -291 5473 4818 211 324 0 0 chr6 177927146 177927220 -11352334 - MIR SINE MIR 0 262 189 195 254 0 0 chr6 177927591 177927646 -11351908 + MIR SINE MIR 171 225 -37 1685 175 26 74 chr6 177927694 177928071 -11351483 - MLT1B LTR MaLR -10 380 22 1235 211 71 44 chr6 177928735 177929100 -11350454 - MLT1C LTR MaLR -75 392 18 450 274 68 7 chr6 177930804 177930950 -11348604 - MER5B DNA MER1_type 0 178 24 2264 91 13 3 chr6 177931092 177931390 -11348164 + AluSc SINE Alu 1 301 -8 214 271 97 62 chr6 177932006 177932150 -11347404 - L2 LINE L2 0 3272 3124 189 213 0 0 chr6 177933884 177933931 -11345623 + (TA)n Simple_repeat Simple_repeat 2 48 0 1674 192 31 41 chr6 177933931 177934314 -11345240 + MLT1B LTR MaLR 3 383 -7 375 23 0 0 chr6 177934314 177934358 -11345196 + (TG)n Simple_repeat Simple_repeat 2 45 0 742 259 166 19 chr6 177935273 177935690 -11343864 - MLT1H LTR MaLR 0 549 72 522 263 45 19 chr6 177935968 177936124 -11343430 - MER5B DNA MER1_type -18 160 1 288 0 0 0 chr6 177936242 177936274 -11343280 + (CA)n Simple_repeat Simple_repeat 2 33 0 3214 168 53 9 chr6 177937016 177937595 -11341959 + MER6A DNA MER2_type 1 605 0 747 222 23 0 chr6 177937613 177937789 -11341765 + MER5A DNA MER1_type 10 189 0 2324 90 3 0 chr6 177937938 177938226 -11341328 + AluSg1 SINE Alu 1 289 -20 477 0 0 0 chr6 177938226 177938279 -11341275 + (TA)n Simple_repeat Simple_repeat 1 53 0 2354 93 0 3 chr6 177939268 177939578 -11339976 - AluSc SINE Alu 0 309 1 330 331 95 21 chr6 177941086 177941328 -11338226 - L2 LINE L2 -184 3088 2829 2386 108 0 0 chr6 177942615 177942920 -11336634 + AluSq SINE Alu 1 305 -8 220 278 0 0 chr6 177943089 177943143 -11336411 - L2 LINE L2 -8 3305 3252 183 293 66 19 chr6 177943288 177943394 -11336160 + MIR SINE MIR 19 129 -79 968 285 53 9 chr6 177943556 177943879 -11335675 - L1ME3A LINE L1 -101 6069 5733 279 0 0 0 chr6 177944488 177944519 -11335035 + (A)n Simple_repeat Simple_repeat 1 31 0 230 274 0 0 chr6 177945042 177945104 -11334450 + MIR SINE MIR 181 242 -20 220 87 87 0 chr6 177946647 177946693 -11332861 + GA-rich Low_complexity Low_complexity 3 52 0 27 62 0 0 chr6 177950889 177950937 -11328617 + AT_rich Low_complexity Low_complexity 1 48 0 2031 124 3 3 chr6 177950987 177951278 -11328276 + AluSx SINE Alu 6 296 -16 207 0 0 0 chr6 177951383 177951406 -11328148 + (A)n Simple_repeat Simple_repeat 1 23 0 242 310 35 0 chr6 177951946 177952033 -11327521 + CT-rich Low_complexity Low_complexity 2 91 0 2219 110 13 0 chr6 177952183 177952492 -11327062 + AluSq SINE Alu 1 313 0 2175 137 0 6 chr6 177955324 177955638 -11323916 + AluSx SINE Alu 1 312 0 204 229 16 66 chr6 177955739 177955800 -11323754 - MIR SINE MIR -2 260 203 1971 143 40 77 chr6 177956228 177956633 -11322921 - MLT1B LTR MaLR 0 390 1 290 254 62 0 chr6 177957912 177958042 -11321512 - MLT1J LTR MaLR -26 485 348 535 255 43 0 chr6 177958053 177958194 -11321360 + MER45A DNA AcHobo 32 178 0 2442 87 3 3 chr6 177958341 177958653 -11320901 - AluSx SINE Alu 0 312 1 573 269 150 36 chr6 177959654 177960041 -11319513 + L1MC/D LINE L1 2971 3401 -2745 37 23 0 0 chr6 177960046 177960090 -11319464 + AT_rich Low_complexity Low_complexity 1 44 0 350 310 117 20 chr6 177960245 177960638 -11318916 + L1MC/D LINE L1 3519 3949 -2197 759 166 0 55 chr6 177960640 177960785 -11318769 - FLAM_C SINE Alu -5 138 2 464 306 85 25 chr6 177960812 177961259 -11318295 + L1MC/D LINE L1 3961 4434 -1712 512 277 45 60 chr6 177961779 177962160 -11317394 + L1MC/D LINE L1 4877 5262 -1014 2130 136 3 9 chr6 177962160 177962499 -11317055 - L1PB3 LINE L1 0 6154 5818 512 277 45 60 chr6 177962499 177962619 -11316935 + L1MC/D LINE L1 5262 5363 -913 706 140 0 84 chr6 177962619 177962762 -11316792 + FLAM_C SINE Alu 3 133 0 512 277 45 60 chr6 177962762 177962899 -11316655 + L1MC/D LINE L1 5363 5501 -775 355 224 65 53 chr6 177962951 177963066 -11316488 - L1M4 LINE L1 -1704 4442 4323 1721 155 17 14 chr6 177963066 177963363 -11316191 + AluJo SINE Alu 1 298 -14 355 224 65 53 chr6 177963363 177963417 -11316137 - L1M4 LINE L1 -1823 4323 4271 2313 129 93 13 chr6 177963419 177963815 -11315739 + MSTA LTR MaLR 1 428 0 9496 134 11 37 chr6 177963817 177965440 -11314114 + MSTA-int LTR MaLR 3 1580 0 2200 155 99 10 chr6 177965440 177965833 -11313721 + MSTA LTR MaLR 1 428 0 1655 230 55 26 chr6 177965834 177966329 -11313225 - L1M4 LINE L1 -1874 4272 3764 * 2814 252 72 44 chr6 177966314 177968271 -11311283 - L1ME LINE L1 -4035 2045 20 2531 62 0 3 chr6 177968545 177968849 -11310705 + AluY SINE Alu 1 303 -8 276 169 0 0 chr6 177968990 177969049 -11310505 - LTR66 LTR ERVL -158 452 394 1114 141 135 10 chr6 177969756 177969948 -11309606 - AluJb SINE Alu -86 226 11 311 301 30 23 chr6 177970482 177970615 -11308939 + L2 LINE L2 3179 3312 -1 357 311 146 7 chr6 177970975 177971126 -11308428 - MIR SINE MIR -71 191 20 1539 222 71 34 chr6 177971925 177972421 -11307133 - MER69 DNA AcHobo -3 2523 2010 1152 239 151 17 chr6 177972420 177972655 -11306899 - MER69 DNA AcHobo -1959 567 268 * 2209 167 8 11 chr6 177972655 177973021 -11306533 + MLT1A1 LTR MaLR 1 365 0 1152 239 151 17 chr6 177973021 177973136 -11306418 - MER69 DNA AcHobo -2258 268 170 1518 184 48 7 chr6 177973161 177973282 -11306272 + AluJo SINE Alu 1 116 -196 180 0 0 0 chr6 177973282 177973302 -11306252 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1518 184 48 7 chr6 177973302 177973451 -11306103 + AluJo SINE Alu 116 282 -30 237 33 0 0 chr6 177973453 177973483 -11306071 + (TC)n Simple_repeat Simple_repeat 1 30 0 329 119 34 25 chr6 177973503 177973621 -11305933 + (TA)n Simple_repeat Simple_repeat 2 120 0 239 228 140 53 chr6 177974080 177974152 -11305402 - L1ME4a LINE L1 -3 6118 6031 2775 146 19 32 chr6 177974152 177974625 -11304929 - MLT1C LTR MaLR 0 467 1 239 228 140 53 chr6 177974625 177974666 -11304888 - L1ME4a LINE L1 -90 6031 5995 434 217 11 11 chr6 177974688 177974780 -11304774 + MLT1G LTR MaLR 14 105 -485 1033 226 18 5 chr6 177974783 177975003 -11304551 + MLT1G LTR MaLR 314 536 -54 1796 174 150 51 chr6 177975003 177975456 -11304098 + MLT2B1 LTR ERVL 1 498 -22 834 144 15 15 chr6 177975915 177976047 -11303507 + FLAM_C SINE Alu 2 133 0 263 299 67 103 chr6 177976434 177976792 -11302762 - HAL1b LINE L1 -666 682 338 2307 115 0 6 chr6 177976836 177977148 -11302406 - AluSx SINE Alu -2 310 1 665 324 45 85 chr6 177977440 177977528 -11302026 + L2 LINE L2 2828 2918 -354 1964 155 0 3 chr6 177977528 177977832 -11301722 - AluJb SINE Alu -7 305 3 665 324 45 85 chr6 177977832 177978191 -11301363 + L2 LINE L2 2918 3257 -15 968 128 11 33 chr6 177978800 177978961 -11300593 + LTR24C LTR ERV1 429 587 -48 1452 69 0 0 chr6 177978961 177979136 -11300418 - AluY SINE Alu -9 302 128 968 128 11 33 chr6 177979136 177979154 -11300400 + LTR24C LTR ERV1 587 604 -31 933 186 0 12 chr6 177979163 177979324 -11300230 + AluJb SINE Alu 122 280 -32 283 189 14 14 chr6 177979331 177979405 -11300149 + GA-rich Low_complexity Low_complexity 1 74 0 771 86 0 0 chr6 177979409 177979526 -11300028 + (GGAA)n Simple_repeat Simple_repeat 2 118 0 33 25 0 0 chr6 177980069 177980109 -11299445 + AT_rich Low_complexity Low_complexity 1 40 0 245 269 52 67 chr6 177980196 177980330 -11299224 - MIR SINE MIR -109 99 21 2084 124 3 13 chr6 177980484 177980790 -11298764 - AluSx SINE Alu -9 303 1 579 312 34 17 chr6 177980991 177981225 -11298329 + L2 LINE L2 1769 2006 -1308 1321 290 117 33 chr6 177981262 177982275 -11297279 + L2 LINE L2 2203 3312 -1 2554 155 33 28 chr6 177982306 177982482 -11297072 + MSTA LTR MaLR 1 175 -253 2372 99 0 6 chr6 177982482 177982794 -11296760 - AluSx SINE Alu -2 310 1 2554 155 33 28 chr6 177982794 177983043 -11296511 + MSTA LTR MaLR 175 428 0 291 335 109 64 chr6 177983156 177983371 -11296183 - L2 LINE L2 0 3272 3041 2403 81 3 3 chr6 177983371 177983669 -11295885 + AluSp SINE Alu 1 298 -15 291 335 109 64 chr6 177983669 177983719 -11295835 - L2 LINE L2 -231 3041 2995 574 309 9 52 chr6 177984234 177984444 -11295110 + MIR SINE MIR 32 232 -30 2513 289 128 2 chr6 177984482 177985363 -11294191 + L2 LINE L2 1462 2453 -861 2117 126 3 3 chr6 177986050 177986352 -11293202 + AluSq SINE Alu 1 302 -11 248 0 31 0 chr6 177986437 177986469 -11293085 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 232 278 183 16 chr6 177986532 177986658 -11292896 + L2 LINE L2 2444 2590 -724 1001 244 91 81 chr6 177986730 177987475 -11292079 + L2 LINE L2 2558 3309 -4 313 343 54 18 chr6 177987484 177987650 -11291904 - L2 LINE L2 -991 2323 2152 2327 86 0 0 chr6 177987676 177987977 -11291577 + AluSc SINE Alu 1 301 -8 496 237 124 27 chr6 177988297 177988483 -11291071 + MLT1L LTR MaLR 410 613 -2 190 291 162 54 chr6 177988543 177988691 -11290863 + L2 LINE L2 2874 3037 -235 567 272 94 11 chr6 177988867 177989047 -11290507 - MIR SINE MIR -24 238 44 325 337 55 25 chr6 177990514 177990677 -11288877 - MIR SINE MIR -7 255 88 261 0 0 0 chr6 177990757 177990786 -11288768 + (TGG)n Simple_repeat Simple_repeat 3 31 0 2087 77 3 50 chr6 177990797 177991096 -11288458 - AluSq SINE Alu -26 287 3 2410 53 0 56 chr6 177991178 177991501 -11288053 - AluY SINE Alu -5 306 2 380 171 207 12 chr6 177991598 177991680 -11287874 + L2 LINE L2 3194 3291 -22 1275 108 0 0 chr6 177992234 177992400 -11287154 + AluSg/x SINE Alu 135 300 -12 2340 181 40 33 chr6 177992417 177992871 -11286683 - MSTB2 LTR MaLR 0 457 1 638 279 191 23 chr6 177992899 177993250 -11286304 + L3 LINE CR1 538 947 -630 21 0 0 0 chr6 177993523 177993544 -11286010 + AT_rich Low_complexity Low_complexity 1 21 0 1766 161 107 93 chr6 177993578 177993777 -11285777 + MLT1D LTR MaLR 8 203 -302 2374 69 0 16 chr6 177993777 177994082 -11285472 + AluY SINE Alu 5 304 -7 1766 161 107 93 chr6 177994082 177994366 -11285188 + MLT1D LTR MaLR 203 498 -7 603 301 160 27 chr6 177994366 177994778 -11284776 - L2 LINE L2 -919 2395 1929 1355 159 4 0 chr6 177994991 177995218 -11284336 - AluSg/x SINE Alu 0 312 85 415 245 195 6 chr6 177995430 177995589 -11283965 + MIR SINE MIR 61 249 -13 951 205 111 34 chr6 177995861 177995971 -11283583 - MER5C DNA MER1_type -2 322 222 1099 176 8 49 chr6 177995971 177996215 -11283339 + L1MB3 LINE L1 5948 6181 -2 951 205 111 34 chr6 177996215 177996256 -11283298 - MER5C DNA MER1_type -102 222 186 2416 69 0 0 chr6 177996256 177996545 -11283009 + AluSc SINE Alu 1 289 -20 951 205 111 34 chr6 177996545 177996690 -11282864 - MER5C DNA MER1_type -138 186 2 275 267 147 0 chr6 177996776 177996851 -11282703 - L2 LINE L2 -1 3312 3227 640 145 129 0 chr6 177996954 177997078 -11282476 - MER47A DNA MER2_type -1 365 226 2034 112 3 48 chr6 177997078 177997392 -11282162 + AluJb SINE Alu 1 300 -12 180 0 0 0 chr6 177997601 177997621 -11281933 + (A)n Simple_repeat Simple_repeat 1 20 0 1119 137 102 0 chr6 177997628 177997825 -11281729 - MER47A DNA MER2_type -148 218 2 252 296 11 128 chr6 177997930 177998109 -11281445 + L1MDa LINE L1 791 948 -5592 3308 204 110 43 chr6 177998130 177999196 -11280358 + L1MDa LINE L1 780 1916 -4624 * 7162 189 40 25 chr6 177999194 177999433 -11280121 + L1M3f LINE L1 11 245 -6083 3600 70 14 9 chr6 177999433 177999875 -11279679 - MLT2A1 LTR ERVL 0 444 1 7162 189 40 25 chr6 177999875 178000329 -11279225 + L1M3f LINE L1 245 691 -5637 2233 112 0 0 chr6 178000329 178000625 -11278929 + AluSx SINE Alu 5 300 -12 7162 189 40 25 chr6 178000625 178002981 -11276573 + L1M3f LINE L1 691 3100 -3228 2329 94 0 7 chr6 178003556 178003855 -11275699 + AluSq SINE Alu 1 297 -16 1424 172 72 4 chr6 178003957 178004207 -11275347 + AluJo SINE Alu 1 267 -45 390 314 88 0 chr6 178004817 178004976 -11274578 - MIR SINE MIR 0 262 90 369 0 0 0 chr6 178005196 178005237 -11274317 + (TA)n Simple_repeat Simple_repeat 2 42 0 2052 146 0 0 chr6 178005525 178005820 -11273734 - AluSx SINE Alu -17 295 1 26 0 0 0 chr6 178006400 178006426 -11273128 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr6 178006670 178006692 -11272862 + AT_rich Low_complexity Low_complexity 1 22 0 246 182 23 0 chr6 178006851 178006895 -11272659 + L2 LINE L2 3251 3295 -18 251 337 56 11 chr6 178009121 178009210 -11270344 + MIR SINE MIR 16 108 -100 2146 88 31 10 chr6 178009226 178009520 -11270034 - AluSq SINE Alu -13 300 1 374 291 44 49 chr6 178010026 178010239 -11269315 - MIR SINE MIR -51 211 4 2268 113 0 3 chr6 178010833 178011142 -11268412 + AluSc SINE Alu 1 308 -1 2313 97 10 0 chr6 178012558 178012866 -11266688 + AluSp SINE Alu 1 311 -2 25 51 0 0 chr6 178013169 178013208 -11266346 + AT_rich Low_complexity Low_complexity 1 39 0 2020 151 0 16 chr6 178013454 178013771 -11265783 - AluJb SINE Alu 0 312 1 242 240 93 0 chr6 178014013 178014088 -11265466 - L2 LINE L2 0 3272 3191 312 405 0 8 chr6 178014148 178014269 -11265285 - MIR SINE MIR -73 135 16 21 0 0 0 chr6 178014299 178014320 -11265234 + AT_rich Low_complexity Low_complexity 1 21 0 2394 65 0 3 chr6 178014533 178014825 -11264729 + AluSc SINE Alu 1 291 -18 203 277 29 80 chr6 178015024 178015161 -11264393 + L3b LINE CR1 1136 1265 -318 2062 109 77 0 chr6 178015567 178015852 -11263702 + AluSc SINE Alu 1 307 -2 203 336 202 0 chr6 178017290 178017394 -11262160 - L3 LINE CR1 -23 1554 1430 653 321 46 52 chr6 178017468 178017835 -11261719 - L3 LINE CR1 -160 1417 1053 10831 204 63 38 chr6 178018243 178018822 -11260732 + L1M4 LINE L1 16 579 -6103 2120 117 3 23 chr6 178018822 178019130 -11260424 + AluSg SINE Alu 1 302 -8 10831 204 63 38 chr6 178019130 178020716 -11258838 + L1M4 LINE L1 579 2125 -4557 1768 131 4 0 chr6 178020716 178020961 -11258593 + AluSc SINE Alu 54 299 -10 10831 204 63 38 chr6 178020961 178021136 -11258418 + L1M4 LINE L1 2125 2294 -4388 2234 132 0 3 chr6 178021136 178021440 -11258114 + AluSx SINE Alu 1 303 -9 10831 204 63 38 chr6 178021440 178022376 -11257178 + L1M4 LINE L1 2294 3206 -3476 1473 189 68 14 chr6 178022376 178022657 -11256897 + AluJo SINE Alu 1 296 -16 10831 204 63 38 chr6 178022657 178025215 -11254339 + L1M4 LINE L1 3206 6032 -650 531 253 139 21 chr6 178026791 178026985 -11252569 + MIR SINE MIR 15 231 -31 2196 120 0 3 chr6 178027255 178027564 -11251990 + AluSx SINE Alu 1 308 -4 185 270 16 32 chr6 178027815 178027878 -11251676 - L2 LINE L2 -510 2804 2743 582 111 0 44 chr6 178078322 178078412 -11201142 - L1PA8A LINE L1 -2 6129 6044 3712 85 17 11 chr6 178078412 178079194 -11200360 - L1PA8A LINE L1 -372 5759 4975 6100 142 27 7 chr6 178079842 178081256 -11198298 - L1MA4A LINE L1 -3 6300 4857 2770 235 74 17 chr6 178082642 178084047 -11195507 - L1M1 LINE L1 -4009 2201 735 449 283 35 7 chr6 178084384 178084529 -11195025 - MIR SINE MIR -1 261 113 315 282 63 53 chr6 178084997 178085203 -11194351 - L2 LINE L2 -120 3193 2986 808 192 69 39 chr6 178087031 178087234 -11192320 - MLT1C LTR MaLR -258 209 1 1255 162 75 90 chr6 178087663 178087984 -11191570 + LTR8A LTR ERV1 1 316 -411 492 225 141 0 chr6 178088094 178088236 -11191318 + MIR SINE MIR 96 257 -5 273 200 62 0 chr6 178089041 178089106 -11190448 - MIR SINE MIR -135 127 59 244 340 0 10 chr6 178089506 178089603 -11189951 + LTR16C LTR ERVL 291 386 -105 1841 153 48 40 chr6 178090801 178091173 -11188381 + THE1C LTR MaLR 1 375 0 542 304 40 27 chr6 178091319 178091543 -11188011 + MIR SINE MIR 28 254 -8 3335 242 45 34 chr6 178091785 178092524 -11187030 - L1MEc LINE L1 -2901 4056 3314 2154 150 8 32 chr6 178092524 178092897 -11186657 + THE1B LTR MaLR 1 364 0 3335 242 45 34 chr6 178092897 178093518 -11186036 - L1MEc LINE L1 -3643 3314 2701 1361 247 49 10 chr6 178093512 178094078 -11185476 - L1MEc LINE L1 -5374 1485 870 * 356 208 0 62 chr6 178094451 178094547 -11185007 - MLT1J2 LTR MaLR 0 450 361 348 309 36 30 chr6 178094594 178094762 -11184792 - MLT1I LTR MaLR -170 239 71 342 268 183 3 chr6 178094784 178094954 -11184600 + MIR SINE MIR 50 246 -16 564 99 0 0 chr6 178095082 178095163 -11184391 + L1PA10 LINE L1 6085 6165 -3 27 29 0 0 chr6 178095218 178095252 -11184302 + AT_rich Low_complexity Low_complexity 1 34 0 2482 90 0 0 chr6 178097513 178097824 -11181730 + AluSx SINE Alu 1 311 -1 2252 158 38 53 chr6 178098088 178098562 -11180992 - MLT1C LTR MaLR 0 467 1 2234 125 144 5 chr6 178100901 178101277 -11178277 - MSTA LTR MaLR 0 428 1 2556 242 79 39 chr6 178101732 178102406 -11177148 - L1MEc LINE L1 -6152 707 7 276 148 33 49 chr6 178103359 178103420 -11176134 + MLT1L LTR MaLR 19 78 -537 647 260 91 83 chr6 178103551 178103913 -11175641 + MLT1L LTR MaLR 218 582 -33 2407 131 6 19 chr6 178104272 178104638 -11174916 - THE1B LTR MaLR 0 364 4 280 255 37 4 chr6 178105224 178105326 -11174228 - MIR SINE MIR -62 146 84 2900 179 25 23 chr6 178105340 178105910 -11173644 + LTR1 LTR ERV1 12 582 -203 379 305 143 0 chr6 178106353 178106507 -11173047 + LTR33 LTR ERVL 1 176 -345 462 276 31 25 chr6 178106653 178106816 -11172738 + LTR33 LTR ERVL 344 507 -14 1043 150 114 65 chr6 178108737 178108857 -11170697 + MER33 DNA MER1_type 1 114 -2471 1969 134 13 20 chr6 178108857 178109155 -11170399 + AluSx SINE Alu 1 296 -16 1043 150 114 65 chr6 178109155 178109341 -11170213 + MER33 DNA MER1_type 114 322 -2 278 242 22 135 chr6 178109351 178109736 -11169818 - MER102a DNA MER1_type 0 330 9 21 0 0 0 chr6 178110309 178110330 -11169224 + AT_rich Low_complexity Low_complexity 1 21 0 1847 151 0 39 chr6 178110789 178111100 -11168454 + AluJo SINE Alu 1 299 -13 325 330 110 11 chr6 178111348 178111539 -11168015 + MIR SINE MIR 16 225 -37 203 286 0 0 chr6 178111705 178111761 -11167793 + C-rich Low_complexity Low_complexity 1 56 0 216 0 0 0 chr6 178112434 178112458 -11167096 + (TG)n Simple_repeat Simple_repeat 1 24 0 1919 106 0 24 chr6 178112476 178112769 -11166785 - L1PA3 LINE L1 0 6155 5870 373 304 29 41 chr6 178113319 178113490 -11166064 - MIR SINE MIR -36 226 58 212 324 126 0 chr6 178114649 178114760 -11164794 - MIR SINE MIR -89 173 49 372 281 44 7 chr6 178114768 178114903 -11164651 - MLT1H LTR MaLR 0 588 431 378 280 40 0 chr6 178115069 178115194 -11164360 - MLT1G1 LTR MaLR -465 130 1 213 342 79 0 chr6 178115327 178115441 -11164113 - L2 LINE L2 -28 3244 3122 21426 82 12 2 chr6 178116074 178118832 -11160722 - HERVL-A2 LTR ERVL -2870 2784 1 3310 99 20 0 chr6 178118832 178119276 -11160278 - MLT2A2 LTR ERVL 0 453 1 232 139 0 0 chr6 178119277 178119313 -11160241 + MSTD LTR MaLR 361 396 0 1144 30 0 0 chr6 178121484 178121619 -11157935 - L1P LINE L1 -2334 3812 3678 2094 136 0 3 chr6 178121619 178121928 -11157626 - AluSx SINE Alu -4 308 1 233 287 43 11 chr6 178122237 178122331 -11157223 + MER69B DNA AcHobo 109 205 -1021 2200 229 71 86 chr6 178122363 178123255 -11156299 + MER69B DNA AcHobo 349 1226 0 581 167 52 53 chr6 178123662 178123870 -11155684 + MLT1A2 LTR MaLR 1 251 -177 1590 212 87 47 chr6 178124279 178124728 -11154826 - MLT1C LTR MaLR 0 467 1 230 326 29 46 chr6 178126669 178126791 -11152763 - MIR SINE MIR -81 181 61 2093 125 18 39 chr6 178126791 178127174 -11152380 + THE1C LTR MaLR 1 375 0 230 326 29 46 chr6 178127174 178127226 -11152328 - MIR SINE MIR -201 61 10 578 246 88 0 chr6 178128719 178128890 -11150664 - MIR SINE MIR 0 262 77 2576 124 38 21 chr6 178129125 178129552 -11150002 - Tigger2a DNA MER2_type 0 434 1 204 341 11 0 chr6 178129894 178129982 -11149572 + GA-rich Low_complexity Low_complexity 4 92 0 298 263 182 0 chr6 178130445 178130544 -11149010 - MLT1G1 LTR MaLR -478 117 1 859 117 0 17 chr6 178130627 178130747 -11148807 + FLAM_C SINE Alu 5 122 -11 21 36 0 0 chr6 178131458 178131486 -11148068 + AT_rich Low_complexity Low_complexity 1 28 0 2274 209 83 83 chr6 178131738 178132414 -11147140 - LTR8 LTR ERV1 0 691 16 2214 219 60 2 chr6 178133581 178134079 -11145475 + MER74A LTR ERVL 27 553 -5 545 283 37 89 chr6 178135789 178136384 -11143170 - L2 LINE L2 0 3272 2730 797 226 0 0 chr6 178136384 178136543 -11143011 - FRAM SINE Alu -7 159 1 545 283 37 89 chr6 178136543 178136634 -11142920 - L2 LINE L2 -542 2730 2636 232 213 21 75 chr6 178138334 178138428 -11141126 + L1MC5 LINE L1 7840 7928 -33 181 306 25 50 chr6 178138736 178138857 -11140697 + MIR3 SINE MIR 14 131 -77 201 74 0 0 chr6 178140073 178140100 -11139454 + (T)n Simple_repeat Simple_repeat 1 27 0 211 313 113 51 chr6 178140270 178140526 -11139028 + L2 LINE L2 2878 3149 -123 929 275 152 24 chr6 178142762 178143307 -11136247 + MLT1G3 LTR MaLR 5 587 -8 2084 245 76 6 chr6 178146863 178147402 -11132152 + MLT1G LTR MaLR 11 587 -3 654 133 0 0 chr6 178148829 178148942 -11130612 + (CATAG)n Simple_repeat Simple_repeat 2 114 0 278 308 19 0 chr6 178148942 178149049 -11130505 + (TGAA)n Simple_repeat Simple_repeat 4 112 0 384 326 38 8 chr6 178149988 178150120 -11129434 + L2 LINE L2 3137 3272 0 247 306 231 25 chr6 178150140 178150339 -11129215 - MIR SINE MIR 0 262 23 2203 100 0 0 chr6 178150509 178150808 -11128746 - AluSg SINE Alu -11 299 1 347 226 81 137 chr6 178153070 178153234 -11126320 - L1MC5 LINE L1 -35 7926 7754 189 0 0 0 chr6 178153234 178153255 -11126299 + (TC)n Simple_repeat Simple_repeat 1 21 0 347 226 81 137 chr6 178153255 178153573 -11125981 - L1MC5 LINE L1 -207 7754 7471 926 158 6 12 chr6 178153587 178153752 -11125802 + AluJb SINE Alu 137 300 -12 7043 55 22 3 chr6 178154809 178156218 -11123336 + L1PA8 LINE L1 4739 6165 -7 265 259 114 44 chr6 178157010 178157168 -11122386 + MER5A DNA MER1_type 2 170 -19 180 174 43 87 chr6 178157267 178157313 -11122241 + MER5A DNA MER1_type 12 55 -134 323 180 0 101 chr6 178157313 178157491 -11122063 + (CCA)n Simple_repeat Simple_repeat 1 160 0 297 112 0 105 chr6 178157515 178157658 -11121896 + (CCA)n Simple_repeat Simple_repeat 1 128 0 251 140 0 173 chr6 178157685 178157835 -11121719 + (CCA)n Simple_repeat Simple_repeat 2 125 0 229 248 106 37 chr6 178157853 178157969 -11121585 + MER5A DNA MER1_type 29 178 0 234 0 0 0 chr6 178158227 178158253 -11121301 + (A)n Simple_repeat Simple_repeat 1 26 0 1096 252 59 43 chr6 178158538 178158697 -11120857 - L1ME4a LINE L1 0 6121 5966 12923 33 1 1 chr6 178158697 178160999 -11118555 - L1PA4 LINE L1 -1 6154 3854 1096 252 59 43 chr6 178160999 178161415 -11118139 - L1ME4a LINE L1 -155 5966 5537 568 206 115 48 chr6 178161477 178161642 -11117912 - MIR SINE MIR -11 251 76 314 243 64 64 chr6 178162308 178162481 -11117073 + L2 LINE L2 2830 3002 -270 245 238 83 12 chr6 178162550 178162634 -11116920 + L2 LINE L2 3175 3264 -8 232 197 33 49 chr6 178162671 178162732 -11116822 - MIR SINE MIR -67 141 82 1042 201 123 41 chr6 178165206 178165267 -11114287 + MER20B DNA MER1_type 1 56 -727 2271 107 0 0 chr6 178165267 178165576 -11113978 - AluSg SINE Alu -1 309 1 1042 201 123 41 chr6 178165576 178165783 -11113771 + MER20B DNA MER1_type 56 291 -492 518 203 50 12 chr6 178165858 178166019 -11113535 + MIR SINE MIR 59 223 -39 326 192 133 75 chr6 178167100 178167176 -11112378 - MER58C DNA MER1_type -2207 213 143 2222 92 3 41 chr6 178167176 178167492 -11112062 - AluY SINE Alu -7 304 1 2151 119 7 0 chr6 178167492 178167786 -11111768 - AluSx SINE Alu -16 296 1 326 192 133 75 chr6 178167786 178167828 -11111726 - MER58C DNA MER1_type -2276 144 87 1595 171 10 10 chr6 178168114 178168413 -11111141 + AluSc SINE Alu 1 299 -10 405 136 0 0 chr6 178168413 178168479 -11111075 + (GA)n Simple_repeat Simple_repeat 1 66 0 968 255 28 25 chr6 178168531 178168813 -11110741 + LTR40b LTR ERVL 100 382 -80 341 162 15 0 chr6 178169061 178169129 -11110425 + GA-rich Low_complexity Low_complexity 3 71 0 318 27 0 0 chr6 178169785 178169822 -11109732 + tRNA-Thr-ACA tRNA tRNA 1 37 -39 234 272 98 11 chr6 178170256 178170348 -11109206 - MER5B DNA MER1_type -78 100 1 225 0 0 0 chr6 178170483 178170508 -11109046 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 272 259 9 0 chr6 178170619 178170727 -11108827 + GA-rich Low_complexity Low_complexity 4 112 0 202 180 0 60 chr6 178171507 178171557 -11107997 + GA-rich Low_complexity Low_complexity 5 51 0 2645 102 80 10 chr6 178171689 178172089 -11107465 - MSTA LTR MaLR 0 428 1 8301 149 6 91 chr6 178172089 178173812 -11105742 - MSTA-int LTR MaLR 0 1580 3 2674 104 75 10 chr6 178173814 178174216 -11105338 - MSTA LTR MaLR 0 428 1 1210 236 69 20 chr6 178176154 178176544 -11103010 - MLT1I LTR MaLR 0 409 1 1958 116 25 18 chr6 178177596 178177881 -11101673 + AluSx SINE Alu 1 287 -25 200 35 35 0 chr6 178177903 178177932 -11101622 + (TA)n Simple_repeat Simple_repeat 1 30 0 892 183 40 25 chr6 178178319 178178521 -11101033 + MLT1A1 LTR MaLR 1 205 -160 623 241 20 25 chr6 178179235 178179434 -11100120 + L1M2 LINE L1 5535 5732 -580 617 266 18 0 chr6 178179434 178179603 -11099951 - MSTA LTR MaLR 0 396 225 375 274 0 0 chr6 178179647 178179742 -11099812 - MSTA LTR MaLR -333 95 1 552 182 132 0 chr6 178180690 178180811 -11098743 + MLT1J2 LTR MaLR 45 181 -269 2864 31 0 0 chr6 178181564 178181882 -11097672 - AluYb8 SINE Alu 0 318 1 1109 185 0 0 chr6 178181937 178182110 -11097444 - AluJb SINE Alu -139 173 1 22 0 0 0 chr6 178182174 178182196 -11097358 + AT_rich Low_complexity Low_complexity 1 22 0 1473 163 0 98 chr6 178182201 178182526 -11097028 - AluJb SINE Alu -19 293 1 228 35 0 0 chr6 178183342 178183371 -11096183 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 25 0 0 0 chr6 178184053 178184078 -11095476 + AT_rich Low_complexity Low_complexity 1 25 0 663 249 120 48 chr6 178184167 178184785 -11094769 + L1MCc LINE L1 1272 2114 -4827 632 174 16 8 chr6 178185291 178185412 -11094142 - FLAM_A SINE Alu -11 122 1 24 0 0 0 chr6 178185492 178185516 -11094038 + AT_rich Low_complexity Low_complexity 1 24 0 1415 275 89 84 chr6 178187104 178187748 -11091806 - HAL1 LINE L1 -1075 1432 793 776 223 38 0 chr6 178187748 178187905 -11091649 + FRAM SINE Alu 1 163 -3 1415 275 89 84 chr6 178187905 178188684 -11090870 - HAL1 LINE L1 -1714 793 1 266 294 12 12 chr6 178188745 178188830 -11090724 + GA-rich Low_complexity Low_complexity 1 85 0 437 253 87 40 chr6 178189584 178189884 -11089670 + L1MEd LINE L1 620 933 -5186 241 265 12 36 chr6 178189907 178189990 -11089564 - MER110 LTR ERV1 -11 480 400 440 217 57 140 chr6 178190302 178190480 -11089074 + L1MEd LINE L1 970 1112 -5007 2164 142 0 0 chr6 178190480 178190790 -11088764 + AluJb SINE Alu 1 310 -2 440 217 57 140 chr6 178190790 178190925 -11088629 + L1MEd LINE L1 1112 1257 -4862 352 335 21 22 chr6 178191000 178191265 -11088289 + L1MEd LINE L1 1364 1669 -4553 1992 83 0 36 chr6 178191367 178191643 -11087911 - AluY SINE Alu -2 309 44 535 137 46 38 chr6 178192167 178192298 -11087256 + L1MA4 LINE L1 6166 6297 -3 2219 289 62 30 chr6 178192320 178192879 -11086675 + L1MEd LINE L1 2660 3200 -2929 524 173 19 0 chr6 178192879 178192983 -11086571 + L1MA7 LINE L1 6175 6280 -11 2219 289 62 30 chr6 178192983 178193864 -11085690 + L1MEd LINE L1 3200 4145 -1984 1652 246 113 19 chr6 178195222 178195795 -11083759 - MLT2E LTR ERVL 0 628 2 407 283 39 79 chr6 178197864 178197917 -11081637 + L2 LINE L2 2664 2718 -554 787 226 0 0 chr6 178197917 178198076 -11081478 + FRAM SINE Alu 1 159 -7 407 283 39 79 chr6 178198076 178198671 -11080883 + L2 LINE L2 2718 3272 0 251 285 72 49 chr6 178200517 178200780 -11078774 + L2 LINE L2 2553 2821 -493 1247 282 61 46 chr6 178200963 178201608 -11077946 - L1MEd LINE L1 -2839 3290 2656 1071 229 59 39 chr6 178201608 178201945 -11077609 - MER2 DNA MER2_type 0 344 1 1247 282 61 46 chr6 178201945 178202836 -11076718 - L1MEd LINE L1 -3473 2656 1779 5547 120 1 1 chr6 178202846 178203638 -11075916 + L1PA15 LINE L1 5366 6157 -8 927 280 78 42 chr6 178203648 178204827 -11074727 - L1MEd LINE L1 -4444 1685 515 1787 161 0 31 chr6 178205080 178205403 -11074151 - AluJb SINE Alu 0 314 1 423 0 0 0 chr6 178206824 178206871 -11072683 + (CA)n Simple_repeat Simple_repeat 1 47 0 816 93 8 23 chr6 178206875 178207004 -11072550 + L1MC4 LINE L1 7916 8042 0 2072 127 16 10 chr6 178208773 178209081 -11070473 + AluSx SINE Alu 1 310 -2 2785 13 0 3 chr6 178209395 178209701 -11069853 + AluY SINE Alu 3 307 -4 191 285 0 100 chr6 178211723 178211853 -11067701 - MER5B DNA MER1_type -35 143 27 1764 78 0 5 chr6 178212620 178212839 -11066715 + AluY SINE Alu 1 218 -93 1461 149 25 0 chr6 178212873 178213115 -11066439 - L1MA5 LINE L1 -309 5991 5744 924 145 0 7 chr6 178213105 178213257 -11066297 + L1MA5 LINE L1 5971 6121 -179 * 428 183 11 0 chr6 178213257 178213350 -11066204 + (TA)n Simple_repeat Simple_repeat 2 95 0 239 283 0 22 chr6 178213350 178213442 -11066112 - L1MC4 LINE L1 -1339 6703 6614 * 282 284 0 0 chr6 178213365 178213453 -11066101 + L1MC4 LINE L1 6615 6702 -1340 234 150 0 0 chr6 178213454 178213494 -11066060 + (TATG)n Simple_repeat Simple_repeat 4 43 0 180 111 0 0 chr6 178213495 178213522 -11066032 + (TA)n Simple_repeat Simple_repeat 1 27 0 2104 125 0 14 chr6 178213522 178213810 -11065744 - AluSx SINE Alu -28 284 1 909 110 74 6 chr6 178213810 178213973 -11065581 + L1MA5A LINE L1 6114 6287 -10 1318 204 91 3 chr6 178214035 178214353 -11065201 + L1MC2 LINE L1 5996 6341 -3 2867 157 6 19 chr6 178214587 178215057 -11064497 - MLT2C2 LTR ERVL 0 464 1 234 0 0 0 chr6 178216481 178216507 -11063047 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 4196 99 13 0 chr6 178217089 178217635 -11061919 - MER41A LTR ERV1 0 554 2 263 393 64 44 chr6 178217789 178218087 -11061467 - L2 LINE L2 -4 3268 2965 498 184 0 0 chr6 178218261 178218348 -11061206 - AluJ/FRAM SINE Alu -5 307 221 321 358 41 0 chr6 178219288 178219411 -11060143 + L2 LINE L2 3145 3272 0 194 269 231 0 chr6 178219577 178219655 -11059899 - MIR3 SINE MIR -3 205 110 2692 207 51 85 chr6 178219941 178220810 -11058744 + L1MC4 LINE L1 7214 7995 0 197 360 27 0 chr6 178220810 178220885 -11058669 - MER5A DNA MER1_type -48 141 65 13473 178 15 19 chr6 178220885 178224224 -11055330 - L1PA13 LINE L1 0 7601 4272 5562 236 18 20 chr6 178224226 178225867 -11053687 - L1PA13 LINE L1 -3483 4101 2471 7361 227 44 11 chr6 178225925 178227523 -11052031 - L1PA13 LINE L1 -5925 1656 6 200 278 0 37 chr6 178227530 178227584 -11051970 - MER5A DNA MER1_type -117 72 21 228 227 76 15 chr6 178227615 178227681 -11051873 - MIR SINE MIR -109 99 30 605 150 242 0 chr6 178228005 178228125 -11051429 + L1MCa LINE L1 1013 1161 -5265 827 172 8 0 chr6 178228125 178228259 -11051295 + AluJb SINE Alu 1 135 -177 1384 222 13 3 chr6 178228259 178228565 -11050989 + AluJo SINE Alu 1 309 -3 912 154 8 19 chr6 178228577 178228944 -11050610 + GA-rich Low_complexity Low_complexity 1 363 0 327 132 0 19 chr6 178228971 178229024 -11050530 + L1MCa LINE L1 1160 1211 -5215 3470 243 78 21 chr6 178229962 178231076 -11048478 - L1MEc LINE L1 -5175 1221 44 588 226 101 1 chr6 178231459 178231645 -11047909 - MER63B DNA MER1_type -2 1060 7 207 339 0 0 chr6 178232302 178232367 -11047187 - L2 LINE L2 -17 3255 3191 1703 188 0 7 chr6 178232697 178233000 -11046554 + AluJo SINE Alu 1 301 -11 181 186 102 102 chr6 178233002 178233061 -11046493 + MIR SINE MIR 41 99 -163 438 20 0 0 chr6 178234070 178234121 -11045433 + (TG)n Simple_repeat Simple_repeat 2 52 0 1680 160 84 0 chr6 178235169 178235485 -11044069 + AluJo SINE Alu 1 340 0 623 289 28 17 chr6 178236113 178236293 -11043261 - MIR SINE MIR -56 206 25 397 333 96 8 chr6 178237057 178237297 -11042257 - L2 LINE L2 -170 3143 2883 189 308 77 44 chr6 178237376 178237467 -11042087 + MIR SINE MIR 30 123 -85 2212 78 7 33 chr6 178238224 178238530 -11041024 + AluY SINE Alu 1 298 -13 495 321 43 11 chr6 178238685 178238872 -11040682 - MIR3 SINE MIR 0 208 16 274 339 184 31 chr6 178240190 178241159 -11038395 - L2 LINE L2 -618 2696 1580 23 33 0 0 chr6 178242063 178242093 -11037461 + AT_rich Low_complexity Low_complexity 1 30 0 943 189 30 23 chr6 178242165 178242416 -11037138 + L1MA9 LINE L1 5473 5732 -559 1098 162 37 0 chr6 178242416 178242607 -11036947 - MSTD LTR MaLR 0 396 199 612 168 0 0 chr6 178242629 178242724 -11036830 - MSTD LTR MaLR -333 95 1 1742 228 34 61 chr6 178242730 178243162 -11036392 + L1MA9 LINE L1 5734 6151 -161 2356 88 0 23 chr6 178243162 178243470 -11036084 + AluY SINE Alu 1 301 -10 1742 228 34 61 chr6 178243470 178243563 -11035991 + L1MA9 LINE L1 6151 6245 -67 1790 189 6 6 chr6 178243572 178243884 -11035670 + AluJb SINE Alu 1 312 0 700 207 19 4 chr6 178243884 178244136 -11035418 + GA-rich Low_complexity Low_complexity 1 255 0 296 109 0 0 chr6 178244148 178244194 -11035360 + L1MA8 LINE L1 6226 6271 -20 196 303 45 15 chr6 178244244 178244310 -11035244 + L3b LINE CR1 1401 1468 -115 351 227 45 0 chr6 178244330 178244418 -11035136 + L1ME4a LINE L1 5565 5656 -465 302 202 113 24 chr6 178244838 178244962 -11034592 + L1ME4a LINE L1 5982 6116 -5 468 282 108 20 chr6 178247208 178247403 -11032151 - MIR SINE MIR -37 225 14 2159 170 106 8 chr6 178248784 178249172 -11030382 + MSTB LTR MaLR 1 426 0 2498 157 12 9 chr6 178249400 178249828 -11029726 + L1MC1 LINE L1 5899 6327 -6 1670 188 0 30 chr6 178251114 178251418 -11028136 - AluJo SINE Alu -17 295 1 563 267 175 63 chr6 178251814 178252196 -11027358 + MLT1J LTR MaLR 3 427 -84 3180 100 102 4 chr6 178252379 178252877 -11026677 - L1MA3 LINE L1 -5 7719 7173 16075 19 0 0 chr6 178252890 178255489 -11024065 - L1HS LINE L1 0 6155 3557 6291 143 8 21 chr6 178255483 178257053 -11022501 - L1MA3 LINE L1 -519 7204 5657 * 7503 177 27 10 chr6 178257027 178257088 -11022466 - L1MA3 LINE L1 -2396 5169 5110 1063 48 14 7 chr6 178257088 178257234 -11022320 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 7503 177 27 10 chr6 178257234 178258870 -11020684 - L1MA3 LINE L1 -2455 5110 3443 430 316 56 31 chr6 178259963 178260013 -11019541 - MIR SINE MIR -16 246 199 1777 168 14 10 chr6 178260013 178260304 -11019250 - AluJo SINE Alu -20 292 1 430 316 56 31 chr6 178260304 178260449 -11019105 - MIR SINE MIR -63 199 46 240 163 0 0 chr6 178262136 178262179 -11017375 + (TG)n Simple_repeat Simple_repeat 2 44 0 555 174 132 0 chr6 178263194 178263315 -11016239 + MLT1J2 LTR MaLR 45 181 -269 205 312 265 15 chr6 178263329 178263672 -11015882 - L2 LINE L2 -954 2360 1932 619 156 9 18 chr6 178263921 178264030 -11015524 - MER66B LTR ERV1 0 486 379 1030 285 98 45 chr6 178264202 178265768 -11013786 + L1MEc LINE L1 1606 3216 -2999 1726 215 66 125 chr6 178265880 178266041 -11013513 - LTR1B LTR ERV1 -81 745 576 2294 84 22 26 chr6 178266041 178266352 -11013202 - AluSg SINE Alu 0 310 1 1726 215 66 125 chr6 178266352 178266982 -11012572 - LTR1B LTR ERV1 -250 576 1 360 272 91 16 chr6 178267044 178267298 -11012256 + L1MEc LINE L1 3289 3561 -2654 2530 177 6 10 chr6 178267468 178267953 -11011601 - L1 LINE L1 -830 5316 4834 * 2665 203 23 78 chr6 178267921 178268651 -11010903 + L1MA6 LINE L1 5471 6160 -140 1530 161 0 82 chr6 178268693 178269009 -11010545 + AluJo SINE Alu 22 311 -1 994 279 39 23 chr6 178269176 178269616 -11009938 + L1MEc LINE L1 3701 4147 -2068 2269 109 0 0 chr6 178269626 178269928 -11009626 + AluSx SINE Alu 1 302 -10 1690 182 0 22 chr6 178270597 178270915 -11008639 - AluJo SINE Alu -1 311 1 630 274 100 41 chr6 178271861 178271935 -11007619 - L1ME4a LINE L1 -222 5899 5831 2196 132 3 0 chr6 178271935 178272239 -11007315 - AluSx SINE Alu -7 305 1 630 274 100 41 chr6 178272239 178272504 -11007050 - L1ME4a LINE L1 -290 5831 5540 2404 97 0 0 chr6 178272791 178273101 -11006453 - AluY SINE Alu -1 310 1 353 228 298 6 chr6 178273101 178273259 -11006295 - MIR SINE MIR -33 229 26 251 314 12 0 chr6 178274370 178274456 -11005098 - MER94 DNA DNA -42 92 6 1314 210 108 28 chr6 178274456 178274880 -11004674 + L1MDa LINE L1 18 475 -6065 977 249 114 66 chr6 178275033 178275694 -11003860 - MER21B LTR ERV1 -7 598 57 850 239 10 0 chr6 178275879 178276080 -11003474 + L1MDa LINE L1 982 1184 -5359 218 32 32 0 chr6 178276624 178276655 -11002899 + (TG)n Simple_repeat Simple_repeat 2 33 0 449 250 23 18 chr6 178277637 178277800 -11001754 - L1MDa LINE L1 -5340 1203 1016 409 259 17 63 chr6 178278869 178278917 -11000637 - MIR3 SINE MIR -3 205 156 2241 135 0 0 chr6 178278917 178279229 -11000325 + AluSx SINE Alu 1 312 0 409 259 17 63 chr6 178279229 178279354 -11000200 - MIR3 SINE MIR -52 156 40 34 24 0 0 chr6 178279428 178279469 -11000085 + AT_rich Low_complexity Low_complexity 1 41 0 2222 127 0 0 chr6 178279546 178279854 -10999700 - AluSq SINE Alu -5 308 1 2196 118 7 0 chr6 178280081 178280387 -10999167 - AluSg SINE Alu -2 308 1 3745 129 40 5 chr6 178280436 178281018 -10998536 + LTR43 LTR ERV1 1 602 0 990 222 85 78 chr6 178281343 178281493 -10998061 + MLT1D LTR MaLR 14 161 -344 2179 103 0 0 chr6 178281493 178281791 -10997763 - AluSx SINE Alu 0 308 11 990 222 85 78 chr6 178281791 178282063 -10997491 + MLT1D LTR MaLR 161 440 -65 960 188 35 67 chr6 178282081 178282336 -10997218 - MLT1D LTR MaLR -258 247 1 396 244 120 50 chr6 178282413 178282637 -10996917 - MLT1I LTR MaLR -172 237 1 1198 244 107 101 chr6 178282882 178283567 -10995987 - MER21B LTR ERV1 -149 714 26 262 281 129 28 chr6 178283687 178283865 -10995689 + MLT1K LTR MaLR 378 573 -15 2381 91 0 0 chr6 178284918 178285215 -10994339 + AluY SINE Alu 1 297 -14 498 247 204 11 chr6 178285598 178285784 -10993770 - MIR SINE MIR -13 249 28 437 147 99 131 chr6 178285933 178286124 -10993430 - Charlie5 DNA MER1_type 0 2624 2440 2091 268 143 35 chr6 178286299 178287392 -10992162 - L2 LINE L2 -355 2959 1698 3253 115 2 2 chr6 178287392 178287887 -10991667 + L1PA13 LINE L1 5688 6182 0 2091 268 143 35 chr6 178287887 178288104 -10991450 - L2 LINE L2 -1616 1698 1506 339 232 53 21 chr6 178288213 178288308 -10991246 + MLT1L LTR MaLR 518 615 0 198 103 0 0 chr6 178289052 178289081 -10990473 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 2069 115 0 4 chr6 178289341 178289620 -10989934 + AluSx SINE Alu 20 297 -15 463 234 121 62 chr6 178289997 178290254 -10989300 - L1MC5 LINE L1 -78 7883 7612 244 250 56 0 chr6 178290596 178290668 -10988886 - L2 LINE L2 -49 3264 3189 589 126 134 0 chr6 178291213 178291340 -10988214 + L1MA8 LINE L1 6145 6288 -3 5493 163 33 8 chr6 178291381 178292450 -10987104 + L1MC1 LINE L1 5170 6263 -70 356 208 114 13 chr6 178292471 178292604 -10986950 + L1MC2 LINE L1 6203 6337 0 1019 276 108 14 chr6 178293775 178294145 -10985409 - MLT1J1 LTR MaLR -18 428 24 310 329 25 32 chr6 178294772 178294930 -10984624 + L2 LINE L2 2518 2674 -640 243 270 14 14 chr6 178295299 178295373 -10984181 + L2 LINE L2 3198 3271 -1 1897 110 0 0 chr6 178295623 178295940 -10983614 - AluY SINE Alu 0 311 50 474 274 41 56 chr6 178295980 178296319 -10983235 - L1M4 LINE L1 -3123 3023 2690 365 323 104 15 chr6 178296495 178296696 -10982858 - MIR SINE MIR -43 219 1 1651 144 0 104 chr6 178297111 178297438 -10982116 + AluJb SINE Alu 1 293 -19 22 0 0 0 chr6 178297443 178297465 -10982089 + AT_rich Low_complexity Low_complexity 1 22 0 1109 185 0 0 chr6 178297529 178297702 -10981852 + AluJb SINE Alu 1 173 -139 2955 16 0 0 chr6 178297757 178298075 -10981479 + AluYb8 SINE Alu 1 318 0 183 284 108 0 chr6 178298516 178298590 -10980964 + MIR SINE MIR 167 248 -14 1099 228 21 0 chr6 178298725 178298958 -10980596 + MIR SINE MIR 22 259 -3 2150 126 0 0 chr6 178298958 178299244 -10980310 + AluSx SINE Alu 1 286 -26 270 0 0 0 chr6 178299247 178299277 -10980277 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 239 0 32 0 chr6 178299409 178299440 -10980114 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 868 153 0 0 chr6 178299457 178299581 -10979973 - FRAM SINE Alu -36 140 17 258 349 18 30 chr6 178299960 178300126 -10979428 + MIR SINE MIR 88 251 -11 2193 116 20 0 chr6 178301331 178301633 -10977921 - AluSx SINE Alu 0 312 5 237 33 0 0 chr6 178302137 178302167 -10977387 + (TG)n Simple_repeat Simple_repeat 1 30 0 616 262 119 51 chr6 178302306 178302730 -10976824 - MER45C DNA AcHobo -320 633 119 2171 136 0 0 chr6 178302730 178303032 -10976522 + AluSx SINE Alu 1 302 -10 616 262 119 51 chr6 178303032 178303151 -10976403 - MER45C DNA AcHobo -834 119 10 2023 129 11 0 chr6 178303837 178304144 -10975410 + AluSx SINE Alu 1 310 0 475 325 68 14 chr6 178305025 178305305 -10974249 - L2 LINE L2 -361 2953 2659 1327 244 78 23 chr6 178305314 178305749 -10973805 - MLT1C LTR MaLR -8 459 1 752 280 33 18 chr6 178305851 178306126 -10973428 - L2 LINE L2 -821 2493 2215 1898 167 72 13 chr6 178306478 178306867 -10972687 + LTR52 LTR ERVL 1 412 -9 257 241 38 25 chr6 178307731 178307810 -10971744 + MIR3 SINE MIR 94 173 -35 1907 173 61 13 chr6 178308974 178309349 -10970205 - MSTD LTR MaLR -3 393 1 1437 134 9 0 chr6 178309481 178309705 -10969849 + L1PA14 LINE L1 5930 6155 -6 502 157 57 14 chr6 178310315 178310949 -10968605 + (TG)n Simple_repeat Simple_repeat 1 660 0 248 269 0 0 chr6 178311030 178311082 -10968472 + MER103 DNA DNA 57 108 -58 1765 131 4 0 chr6 178311346 178311582 -10967972 - AluSx SINE Alu -43 269 33 216 311 89 58 chr6 178312014 178312142 -10967412 - MIR SINE MIR -20 242 105 783 186 0 0 chr6 178312142 178312318 -10967236 - FLAM_C SINE Alu 0 133 1 216 311 89 58 chr6 178312318 178312379 -10967175 - MIR SINE MIR -157 105 47 3002 238 47 63 chr6 178312467 178313604 -10965950 - L1M4 LINE L1 -2127 4019 2902 799 201 2 12 chr6 178513631 178514114 -10765440 + (CACCAT)n Simple_repeat Simple_repeat 1 477 0 470 291 53 0 chr6 178515599 178515750 -10763804 + MIR SINE MIR 101 259 -3 850 200 29 0 chr6 178515751 178515926 -10763628 - L1MB4 LINE L1 -1 6179 6000 4876 64 17 15 chr6 178519950 178521055 -10758499 + MER11A LTR ERVK 1 1247 -19 313 324 116 63 chr6 178522836 178523345 -10756209 - L1MCc LINE L1 -5535 888 353 370 341 123 45 chr6 178525999 178526486 -10753068 - L1MCc LINE L1 -5535 888 364 2228 118 3 0 chr6 178528591 178528896 -10750658 - AluSp SINE Alu -7 306 1 620 313 170 37 chr6 178529866 178530326 -10749228 - L1MCc LINE L1 -5536 887 367 243 0 0 0 chr6 178531357 178531384 -10748170 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 111 0 0 chr6 178531407 178531443 -10748111 + (TA)n Simple_repeat Simple_repeat 1 36 0 2044 270 100 54 chr6 178531634 178534557 -10744997 + L1ME2 LINE L1 109 3131 -3084 667 261 84 31 chr6 178534559 178534785 -10744769 + Charlie1 DNA MER1_type 2 239 -2522 407 280 0 35 chr6 178534770 178534913 -10744641 + Charlie1 DNA MER1_type 2623 2760 -1 * 3190 259 88 47 chr6 178535019 178536566 -10742988 + L1ME2 LINE L1 3158 4640 -1593 1455 194 7 11 chr6 178536566 178536849 -10742705 + AluJo SINE Alu 13 294 -18 3190 259 88 47 chr6 178536849 178538243 -10741311 + L1ME2 LINE L1 4640 6225 -8 1825 131 28 64 chr6 178539187 178539576 -10739978 + THE1C LTR MaLR 1 375 0 2433 80 6 6 chr6 178539659 178539972 -10739582 + AluSp SINE Alu 1 313 0 198 71 0 0 chr6 178540818 178540846 -10738708 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2521 29 23 0 chr6 178541000 178541307 -10738247 + L1PA4 LINE L1 5838 6151 -4 3449 138 6 4 chr6 178541604 178542104 -10737450 + MER1A DNA MER1_type 29 529 0 3467 215 74 10 chr6 178542267 178543067 -10736487 - MER21B LTR ERV1 -1 862 12 216 0 0 0 chr6 178543709 178543733 -10735821 + (A)n Simple_repeat Simple_repeat 1 24 0 22 80 0 0 chr6 178545665 178545715 -10733839 + AT_rich Low_complexity Low_complexity 1 50 0 187 380 44 9 chr6 178545742 178545855 -10733699 - L2 LINE L2 -15 3257 3141 282 125 0 0 chr6 178546015 178546063 -10733491 + (CA)n Simple_repeat Simple_repeat 1 48 0 31 26 0 0 chr6 178546741 178546779 -10732775 + AT_rich Low_complexity Low_complexity 1 38 0 270 226 58 14 chr6 178549951 178550071 -10729483 - MIR SINE MIR -32 230 104 397 121 77 44 chr6 178550286 178550377 -10729177 - MLT1K LTR MaLR -9 579 486 336 232 193 2 chr6 178550759 178550900 -10728654 + MIR SINE MIR 22 186 -70 646 185 0 25 chr6 178550951 178551108 -10728446 + (CCA)n Simple_repeat Simple_repeat 1 153 0 197 0 71 0 chr6 178551567 178551595 -10727959 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr6 178551804 178551829 -10727725 + AT_rich Low_complexity Low_complexity 1 25 0 514 110 68 21 chr6 178552260 178552496 -10727058 + (TCTA)n Simple_repeat Simple_repeat 1 247 0 248 318 34 0 chr6 178552839 178552927 -10726627 - L1 LINE L1 -1146 5000 4910 1108 246 66 12 chr6 178553761 178554118 -10725436 + MER63 DNA MER1_type 2 339 -721 2090 120 74 11 chr6 178554118 178554469 -10725085 + THE1C LTR MaLR 1 373 -2 1108 246 66 12 chr6 178554469 178554515 -10725039 + MER63 DNA MER1_type 339 1054 -6 1361 172 133 14 chr6 178556423 178556702 -10722852 - AluJo SINE Alu 0 312 1 332 277 21 0 chr6 178561610 178561704 -10717850 + L2 LINE L2 3208 3303 -10 785 227 136 8 chr6 178561753 178562104 -10717450 + MLT1C LTR MaLR 1 467 0 348 24 0 0 chr6 178562184 178562225 -10717329 + (TG)n Simple_repeat Simple_repeat 2 42 0 308 266 92 18 chr6 178563169 178563278 -10716276 + L2 LINE L2 3137 3253 -19 231 261 270 43 chr6 178564746 178564957 -10714597 + L2 LINE L2 3014 3272 0 479 197 37 96 chr6 178565356 178565544 -10714010 + MER104 DNA MER2_type 1 177 -3 348 328 48 21 chr6 178565570 178565756 -10713798 + MLT1J LTR MaLR 9 199 -312 345 267 111 41 chr6 178565830 178566002 -10713552 + MLT1J LTR MaLR 328 511 0 438 346 93 4 chr6 178566215 178566452 -10713102 - MIR SINE MIR -3 259 2 22 0 0 0 chr6 178567138 178567160 -10712394 + AT_rich Low_complexity Low_complexity 1 22 0 1545 187 62 0 chr6 178567160 178567317 -10712237 - AluJo SINE Alu -22 290 107 411 21 0 0 chr6 178567317 178567365 -10712189 + (TAG)n Simple_repeat Simple_repeat 1 48 0 1545 187 62 0 chr6 178567365 178567480 -10712074 - AluJo SINE Alu -205 107 1 1065 208 77 0 chr6 178567688 178567895 -10711659 - MER58A DNA MER1_type -1 223 1 414 289 94 20 chr6 178567927 178568076 -10711478 - MIR SINE MIR -102 160 1 2032 79 19 0 chr6 178568182 178568448 -10711106 + AluSg SINE Alu 26 296 -14 632 287 125 76 chr6 178568535 178569072 -10710482 + MLT1L LTR MaLR 39 601 -14 1104 236 20 0 chr6 178569779 178570033 -10709521 - L1ME1 LINE L1 -7 6159 5901 288 217 0 0 chr6 178570581 178570641 -10708913 + MIR SINE MIR 95 154 -108 36 0 0 0 chr6 178570644 178570680 -10708874 + AT_rich Low_complexity Low_complexity 1 36 0 219 239 0 0 chr6 178570739 178570806 -10708748 + (TA)n Simple_repeat Simple_repeat 2 68 0 238 280 160 0 chr6 178571179 178571254 -10708300 + MER5A DNA MER1_type 9 95 -94 1535 208 16 6 chr6 178572168 178572486 -10707068 - MER33 DNA MER1_type 0 324 4 314 325 120 31 chr6 178574028 178574320 -10705234 + L1ME3A LINE L1 5609 5926 -244 7796 33 16 2 chr6 178576840 178578046 -10701508 + L1PA5 LINE L1 4935 6152 -2 356 250 106 19 chr6 178580159 178580263 -10699291 - MER81 DNA DNA 0 114 2 2068 202 73 69 chr6 178582305 178582855 -10696699 - MLT2B3 LTR ERVL 0 554 3 297 304 66 55 chr6 178582943 178583200 -10696354 - MLT1H LTR MaLR -196 353 94 560 251 39 114 chr6 178583399 178583758 -10695796 - MLT1I LTR MaLR -17 392 61 2317 222 73 68 chr6 178585511 178585712 -10693842 + L1MC5 LINE L1 6730 6928 -1033 3011 89 8 0 chr6 178585712 178586084 -10693470 + THE1C LTR MaLR 1 375 0 2317 222 73 68 chr6 178586084 178586861 -10692693 + L1MC5 LINE L1 6928 7713 -248 452 249 67 26 chr6 178587023 178587216 -10692338 + L1MC5 LINE L1 7729 7929 -32 298 309 6 22 chr6 178587519 178587736 -10691818 + CT-rich Low_complexity Low_complexity 1 213 0 2171 110 0 3 chr6 178588211 178588503 -10691051 - AluSq SINE Alu -22 291 1 1834 150 3 29 chr6 178588821 178589127 -10690427 - AluJo SINE Alu -14 298 1 201 175 0 0 chr6 178589182 178589222 -10690332 + GA-rich Low_complexity Low_complexity 2 41 0 237 174 0 0 chr6 178589579 178589625 -10689929 + LTR66 LTR ERVL 394 439 -171 2118 139 0 0 chr6 178590266 178590567 -10688987 + AluSx SINE Alu 1 301 -11 5784 2 0 0 chr6 178590938 178591562 -10687992 + L1HS LINE L1 5532 6155 0 246 176 0 0 chr6 178593614 178593665 -10685889 + (TTATA)n Simple_repeat Simple_repeat 3 53 0 275 119 0 0 chr6 178593668 178593710 -10685844 - FLAM SINE Alu -7 126 85 223 354 0 7 chr6 178593857 178593962 -10685592 + MIR SINE MIR 3 105 -103 11973 185 60 45 chr6 178594401 178599893 -10679661 - L1MC1 LINE L1 -81 6532 926 189 0 0 0 chr6 178599893 178599914 -10679640 + (TG)n Simple_repeat Simple_repeat 2 22 0 11973 185 60 45 chr6 178599914 178600836 -10678718 - L1MC1 LINE L1 -5687 926 20 463 265 127 0 chr6 178602665 178602815 -10676739 - Charlie2 DNA MER1_type 0 2862 2684 2401 94 0 0 chr6 178602815 178603114 -10676440 - AluSc SINE Alu -10 299 1 463 265 127 0 chr6 178603114 178603144 -10676410 - Charlie2 DNA MER1_type -178 2684 2659 1981 134 20 54 chr6 178603145 178603496 -10676058 + MER1B DNA MER1_type 1 339 0 2486 226 46 14 chr6 178603539 178604263 -10675291 - Charlie2 DNA MER1_type -255 2607 1861 952 262 62 31 chr6 178604281 178604602 -10674952 - Charlie2 DNA MER1_type -2520 342 12 349 278 75 8 chr6 178605498 178605631 -10673923 + LTR33A LTR ERVL 15 156 -367 302 146 0 18 chr6 178605870 178605925 -10673629 + LTR33A LTR ERVL 455 508 -15 3461 24 0 0 chr6 178606894 178607308 -10672246 + L1PA4 LINE L1 5771 6184 0 219 36 0 0 chr6 178607650 178607678 -10671876 + (TAA)n Simple_repeat Simple_repeat 1 28 0 401 316 163 0 chr6 178608971 178609161 -10670393 + MIR SINE MIR 32 252 -10 197 219 141 31 chr6 178609216 178609280 -10670274 + MER5B DNA MER1_type 28 98 -80 1659 245 28 8 chr6 178609406 178609806 -10669748 + MLT1C LTR MaLR 59 466 -1 193 265 0 0 chr6 178611217 178611266 -10668288 + L2 LINE L2 3265 3313 0 1136 182 5 5 chr6 178612053 178612240 -10667314 + MER5A DNA MER1_type 1 187 -2 1200 216 43 14 chr6 178612358 178612640 -10666914 - MLT1E2 LTR MaLR 0 626 337 332 267 144 93 chr6 178615903 178616139 -10663415 - HAL1 LINE L1 -2090 417 170 1089 174 139 97 chr6 178616276 178616356 -10663198 + MER2 DNA MER2_type 23 98 -247 1800 136 64 0 chr6 178616356 178616621 -10662933 + AluSx SINE Alu 1 282 -30 1089 174 139 97 chr6 178616621 178616850 -10662704 + MER2 DNA MER2_type 98 345 0 1192 275 17 94 chr6 178617538 178618356 -10661198 - L1ME LINE L1 -5055 1015 261 21 57 0 0 chr6 178618569 178618604 -10660950 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 178620307 178620329 -10659225 + AT_rich Low_complexity Low_complexity 1 22 0 1944 139 58 93 chr6 178621533 178621965 -10657589 + MER47B DNA MER2_type 1 417 -1 219 319 0 64 chr6 178622429 178622523 -10657031 + MIR3 SINE MIR 118 205 -3 2125 139 17 0 chr6 178623064 178623359 -10656195 - AluSx SINE Alu -7 305 6 2891 84 40 46 chr6 178624040 178624494 -10655060 - L1PA8 LINE L1 -9 6163 5713 568 305 62 5 chr6 178624522 178624732 -10654822 - MIR SINE MIR -25 237 16 246 62 0 0 chr6 178626055 178626087 -10653467 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 13070 109 7 39 chr6 178626099 178628294 -10651260 + L1P3 LINE L1 7 2190 -4271 1374 109 4 40 chr6 178628294 178628534 -10651020 + L1P3 LINE L1 2667 2899 -3562 6824 59 13 2 chr6 178628534 178629380 -10650174 + L1PA7 LINE L1 5276 6151 -3 1588 270 78 25 chr6 178630286 178630815 -10648739 + MLT1G LTR MaLR 32 588 -2 2441 105 47 11 chr6 178633129 178633491 -10646063 + THE1C LTR MaLR 1 375 0 1141 86 76 7 chr6 178633491 178633764 -10645790 + THE1C-int LTR MaLR 1 223 -1357 * 4606 125 111 1 chr6 178633752 178634474 -10645080 + THE1C-int LTR MaLR 780 1580 0 2574 117 5 11 chr6 178634474 178634851 -10644703 + THE1C LTR MaLR 1 375 0 819 181 44 28 chr6 178634999 178635181 -10644373 + MER5A DNA MER1_type 1 185 -4 247 298 50 21 chr6 178635263 178635404 -10644150 + MIR SINE MIR 90 234 -28 529 207 27 9 chr6 178636567 178636678 -10642876 - MER81 DNA DNA 0 114 2 504 312 13 7 chr6 178638879 178639033 -10640521 + MIR SINE MIR 87 241 -21 488 324 96 23 chr6 178639143 178639665 -10639889 - L1 LINE L1 -948 5198 4639 2273 107 0 0 chr6 178640100 178640390 -10639164 - AluSq SINE Alu -23 290 1 2232 68 0 44 chr6 178644761 178645090 -10634464 - AluY SINE Alu 0 316 1 420 236 32 66 chr6 178645404 178645731 -10633823 - MLT1J2 LTR MaLR -25 425 43 805 184 174 63 chr6 178645775 178645982 -10633572 - AluJb SINE Alu -13 299 70 309 173 0 19 chr6 178646067 178646119 -10633435 + MER58D DNA MER1_type 1 51 -335 267 266 79 68 chr6 178646236 178646398 -10633156 - MIR3 SINE MIR -63 145 2 182 366 36 0 chr6 178646772 178646884 -10632670 + MER5A DNA MER1_type 15 130 -59 195 271 34 0 chr6 178647172 178647231 -10632323 + L2 LINE L2 3244 3304 -9 1972 115 59 0 chr6 178647463 178647750 -10631804 + AluSx SINE Alu 1 304 -8 2387 60 0 0 chr6 178649155 178649464 -10630090 + AluY SINE Alu 1 309 0 217 256 37 12 chr6 178649635 178649717 -10629837 - MIR SINE MIR -63 145 62 22 0 0 0 chr6 178652154 178652176 -10627378 + GC_rich Low_complexity Low_complexity 1 22 0 330 26 0 0 chr6 178652733 178652772 -10626782 + (CAGGG)n Simple_repeat Simple_repeat 3 41 0 200 226 48 32 chr6 178653236 178653298 -10626256 + MIR SINE MIR 22 84 -178 2942 137 124 4 chr6 178653481 178654027 -10625527 + MER39B LTR ERV1 1 612 -41 401 237 84 37 chr6 178654134 178654324 -10625230 + L2 LINE L2 3115 3313 0 186 118 0 0 chr6 178654342 178654376 -10625178 + (CA)n Simple_repeat Simple_repeat 1 34 0 24 32 0 0 chr6 178654882 178654913 -10624641 + AT_rich Low_complexity Low_complexity 1 31 0 381 223 18 36 chr6 178654946 178655058 -10624496 + MIR SINE MIR 8 117 -145 317 238 160 17 chr6 178655344 178655525 -10624029 - MER115 DNA AcHobo -475 218 12 752 325 85 22 chr6 178655609 178656247 -10623307 - L1MC4a LINE L1 -421 5938 5265 414 353 101 12 chr6 178656259 178656676 -10622878 - L1MC4a LINE L1 -893 5253 4800 408 262 77 36 chr6 178656954 178657122 -10622432 - MER3 DNA MER1_type -80 129 2 350 301 96 13 chr6 178657951 178658107 -10621447 + MER117 DNA MER1_type 1 169 -28 1904 181 7 0 chr6 178659048 178659358 -10620196 - AluJo SINE Alu 0 312 1 21 0 0 0 chr6 178660488 178660509 -10619045 + AT_rich Low_complexity Low_complexity 1 21 0 656 277 16 0 chr6 178661014 178661198 -10618356 + L1MD3 LINE L1 7798 7984 -11 392 311 30 8 chr6 178663086 178663218 -10616336 + MIR SINE MIR 57 191 -71 1689 180 45 3 chr6 178663442 178663731 -10615823 - AluJb SINE Alu -11 301 1 191 143 0 24 chr6 178665702 178665744 -10613810 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 208 316 62 51 chr6 178666272 178666449 -10613105 - L2 LINE L2 -858 2456 2278 187 200 15 31 chr6 178666763 178666828 -10612726 + GA-rich Low_complexity Low_complexity 2 65 0 243 234 0 0 chr6 178667216 178667263 -10612291 - MLT1J1 LTR MaLR -20 426 380 212 279 25 14 chr6 178667695 178667766 -10611788 - MIR SINE MIR -133 75 3 261 98 0 0 chr6 178668199 178668240 -10611314 + (GA)n Simple_repeat Simple_repeat 1 41 0 310 368 29 46 chr6 178668826 178668905 -10610649 - HAL1 LINE L1 -6 2501 2422 2704 137 27 29 chr6 178668905 178669351 -10610203 - MER65A LTR ERV1 0 445 1 310 368 29 46 chr6 178669351 178669510 -10610044 - HAL1 LINE L1 -85 2422 2267 1076 222 77 54 chr6 178670048 178670464 -10609090 - MLT1C LTR MaLR -46 421 1 21 36 0 0 chr6 178670474 178670502 -10609052 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 178671674 178671696 -10607858 + AT_rich Low_complexity Low_complexity 1 22 0 2238 115 0 3 chr6 178672536 178672841 -10606713 - AluSx SINE Alu -6 306 3 953 92 0 0 chr6 178672937 178673087 -10606467 + AluSc SINE Alu 162 311 0 25 0 0 0 chr6 178673740 178673765 -10605789 + AT_rich Low_complexity Low_complexity 1 25 0 2315 93 27 0 chr6 178673789 178674090 -10605464 - AluY SINE Alu -2 309 1 513 188 51 8 chr6 178675140 178675257 -10604297 + MLT1B LTR MaLR 269 390 0 550 291 95 23 chr6 178675259 178675565 -10603989 - L2 LINE L2 -969 2345 2018 264 319 95 6 chr6 178675608 178675777 -10603777 - L2 LINE L2 -1232 2082 1899 187 343 30 20 chr6 178675811 178675910 -10603644 - L2 LINE L2 -1579 1735 1636 1537 231 29 52 chr6 178676414 178676751 -10602803 + L1MC4 LINE L1 7577 7901 -141 180 111 0 0 chr6 178676751 178676778 -10602776 + (TG)n Simple_repeat Simple_repeat 2 28 0 1537 231 29 52 chr6 178676778 178676917 -10602637 + L1MC4 LINE L1 7901 8042 0 2050 140 196 0 chr6 178676971 178677329 -10602225 - MSTA LTR MaLR 0 428 1 613 205 99 35 chr6 178678052 178678223 -10601331 + MLT1J LTR MaLR 96 277 -234 677 257 23 6 chr6 178678264 178678439 -10601115 + MER58D DNA MER1_type 12 189 -197 350 306 110 20 chr6 178678452 178678697 -10600857 - ERVL LTR ERVL -1325 4439 4173 586 339 102 21 chr6 178679069 178679452 -10600102 - ERVL LTR ERVL -2267 3497 3084 3105 304 67 50 chr6 178679474 178680755 -10598799 - ERVL LTR ERVL -2030 2966 1658 188 0 0 69 chr6 178680755 178680784 -10598770 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3105 304 67 50 chr6 178680784 178680853 -10598701 - ERVL LTR ERVL -3338 1658 1592 1777 263 73 66 chr6 178680928 178681292 -10598262 - ERVL LTR ERVL -3718 1278 905 1974 154 51 9 chr6 178681292 178681642 -10597912 + L1MA6 LINE L1 5936 6300 0 1777 263 73 66 chr6 178681642 178681961 -10597593 - ERVL LTR ERVL -4091 905 590 1168 277 102 11 chr6 178681979 178682412 -10597142 + L1MB7 LINE L1 473 944 -6060 3262 235 40 5 chr6 178682428 178683208 -10596346 + L1MB7 LINE L1 5226 6032 -1074 1421 183 58 19 chr6 178683206 178683518 -10596036 + L1MB7 LINE L1 6790 7113 -31 * 643 231 21 7 chr6 178683591 178683734 -10595820 - ERVL LTR ERVL -4473 523 379 438 282 27 9 chr6 178683937 178684047 -10595507 - ERVL LTR ERVL -4884 112 1 1394 276 58 19 chr6 178684047 178684478 -10595076 - LTR16A LTR ERVL 0 450 3 2041 292 75 51 chr6 178684480 178685930 -10593624 - L1MEc LINE L1 -4280 2116 633 9093 192 100 65 chr6 178686174 178688146 -10591408 + L1MA8 LINE L1 1311 3212 -4039 2207 107 0 0 chr6 178688146 178688435 -10591119 + AluSc SINE Alu 5 293 -16 9093 192 100 65 chr6 178688435 178688589 -10590965 + L1MA8 LINE L1 3212 3359 -3892 1281 179 21 13 chr6 178688589 178688823 -10590731 + MER46A DNA MER2_type 1 236 0 9093 192 100 65 chr6 178688823 178689239 -10590315 + L1MA8 LINE L1 3359 3759 -3492 1500 193 7 72 chr6 178689239 178689545 -10590009 + AluJo SINE Alu 1 286 -16 9093 192 100 65 chr6 178689545 178689560 -10589994 + L1MA8 LINE L1 3759 3772 -3479 1972 129 40 10 chr6 178689560 178689863 -10589691 + AluSx SINE Alu 1 312 0 9093 192 100 65 chr6 178689863 178691930 -10587624 + L1MA8 LINE L1 3772 6100 -1151 2366 69 3 38 chr6 178691930 178692250 -10587304 - AluY SINE Alu -2 309 1 9093 192 100 65 chr6 178692250 178693444 -10586110 + L1MA8 LINE L1 6100 7250 -1 247 343 36 29 chr6 178693500 178693640 -10585914 + MIR3 SINE MIR 7 147 -61 188 275 110 11 chr6 178694483 178694574 -10584980 + MIR3 SINE MIR 109 208 0 1394 172 50 46 chr6 178694973 178695144 -10584410 - AluJo SINE Alu -9 303 129 213 39 0 0 chr6 178695144 178695170 -10584384 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 1394 172 50 46 chr6 178695170 178695300 -10584254 - AluJo SINE Alu -183 129 1 2718 118 6 3 chr6 178695428 178695791 -10583763 + THE1B LTR MaLR 1 364 0 9347 102 46 108 chr6 178695791 178696262 -10583292 + THE1B-int LTR MaLR 1 500 -1080 827 145 277 0 chr6 178696262 178696428 -10583126 + AluSq SINE Alu 88 299 -14 9347 102 46 108 chr6 178696428 178697476 -10582078 + THE1B-int LTR MaLR 500 1580 0 2858 83 14 8 chr6 178697476 178697838 -10581716 + THE1B LTR MaLR 1 364 0 223 301 36 0 chr6 178698346 178698429 -10581125 - MIR SINE MIR -86 122 37 230 237 62 38 chr6 178700622 178700748 -10578806 + L1M1 LINE L1 5616 5756 -410 1015 126 59 77 chr6 178700766 178700988 -10578566 - MLT1B LTR MaLR -160 230 13 461 258 6 0 chr6 178700997 178701160 -10578394 + (TG)n Simple_repeat Simple_repeat 1 164 0 264 73 0 147 chr6 178701167 178701235 -10578319 + MER4-int LTR ERV1 1111 1168 -5430 205 227 34 0 chr6 178701239 178701327 -10578227 + (TATG)n Simple_repeat Simple_repeat 4 94 0 253 173 0 0 chr6 178701327 178701379 -10578175 + MER4-int LTR ERV1 1111 1162 -5436 273 267 0 0 chr6 178701379 178701484 -10578070 + (TG)n Simple_repeat Simple_repeat 1 105 0 564 242 0 0 chr6 178701505 178701658 -10577896 + (TG)n Simple_repeat Simple_repeat 2 154 0 270 0 0 0 chr6 178701682 178701712 -10577842 + (TG)n Simple_repeat Simple_repeat 2 31 0 3581 146 43 49 chr6 178703529 178704227 -10575327 + L1MA9 LINE L1 5619 6312 0 262 310 44 18 chr6 178704312 178704425 -10575129 - L2 LINE L2 0 3272 3157 2390 63 13 10 chr6 178705660 178705962 -10573592 - AluY SINE Alu -8 303 1 2189 89 7 10 chr6 178706071 178706362 -10573192 + AluSq SINE Alu 11 300 -13 24 53 0 0 chr6 178707587 178707625 -10571929 + AT_rich Low_complexity Low_complexity 1 38 0 2699 94 119 5 chr6 178708566 178708968 -10570586 + LTR7 LTR ERV1 1 448 -2 21423 79 13 21 chr6 178708970 178711984 -10567570 + HERVH LTR ERV1 1 2992 -4721 893 137 20 0 chr6 178711970 178712116 -10567438 + HERVH LTR ERV1 3140 3288 -4425 * 3503 98 8 6 chr6 178712108 178712608 -10566946 + HERVH LTR ERV1 3492 3992 -3721 * 4484 143 0 3 chr6 178712600 178713271 -10566283 + HERVH LTR ERV1 4478 5146 -2567 1398 129 18 5 chr6 178713275 178713492 -10566062 + HERVH LTR ERV1 5600 5819 -1894 * 2398 100 48 13 chr6 178713490 178713869 -10565685 + HERVH LTR ERV1 7322 7713 0 2718 95 122 5 chr6 178713869 178714270 -10565284 + LTR7 LTR ERV1 1 448 -2 7874 233 48 55 chr6 178714711 178716369 -10563185 + L1ME1 LINE L1 37 1705 -4510 1206 176 23 32 chr6 178716369 178716590 -10562964 - MER20 DNA MER1_type 0 219 1 7874 233 48 55 chr6 178716590 178719651 -10559903 + L1ME1 LINE L1 1705 4708 -1507 2515 90 0 0 chr6 178719651 178719962 -10559592 + AluY SINE Alu 1 311 0 7874 233 48 55 chr6 178719962 178720400 -10559154 + L1ME1 LINE L1 4708 5148 -1067 2955 215 60 80 chr6 178720404 178721329 -10558225 + L1ME1 LINE L1 5323 6229 -6 525 283 170 24 chr6 178721550 178722327 -10557227 - L2 LINE L2 -26 3287 2404 183 80 0 0 chr6 178722949 178722974 -10556580 + (A)n Simple_repeat Simple_repeat 1 25 0 602 296 10 5 chr6 178723613 178723812 -10555742 - MER3 DNA MER1_type 0 209 10 238 339 48 8 chr6 178726021 178726145 -10553409 + MIR3 SINE MIR 38 166 -42 710 183 0 8 chr6 178726171 178726297 -10553257 + MER20 DNA MER1_type 95 219 0 1426 145 0 9 chr6 178726433 178726654 -10552900 - AluJb SINE Alu -6 306 88 416 279 58 35 chr6 178727222 178727394 -10552160 + L2 LINE L2 3128 3303 -10 430 309 15 29 chr6 178727882 178728154 -10551400 + L1MEd LINE L1 934 1201 -4918 349 143 0 0 chr6 178728502 178728558 -10550996 + MER89 LTR ERV1 2 57 -502 712 214 20 46 chr6 178728568 178728764 -10550790 + MER89 LTR ERV1 287 477 -82 186 133 0 0 chr6 178729389 178729419 -10550135 + (CAGAG)n Simple_repeat Simple_repeat 4 33 0 1862 198 37 3 chr6 178729617 178729970 -10549584 - MLT1A1 LTR MaLR 0 365 1 1764 209 81 7 chr6 178730111 178730533 -10549021 - MLT1C LTR MaLR 0 467 15 1757 230 107 77 chr6 178730694 178731485 -10548069 - MER21B LTR ERV1 -5 926 1 5897 171 35 18 chr6 178731579 178732694 -10546860 - MER21B-int LTR ERV1 -55 4136 3003 5273 181 30 11 chr6 178732698 178733687 -10545867 - MER21B-int LTR ERV1 -1367 2824 1817 2108 108 0 0 chr6 178733690 178733967 -10545587 + AluSx SINE Alu 1 277 -35 228 35 0 0 chr6 178733968 178733997 -10545557 + (TC)n Simple_repeat Simple_repeat 2 30 0 4663 217 27 2 chr6 178734009 178734936 -10544618 - MER21B-int LTR ERV1 -3240 951 2 300 256 36 54 chr6 178735186 178735354 -10544200 - L1MC5 LINE L1 -184 7777 7613 347 234 47 9 chr6 178735483 178735590 -10543964 - L1MC5 LINE L1 -549 7412 7302 217 0 61 0 chr6 178735853 178735886 -10543668 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1944 144 0 18 chr6 178735888 178736173 -10543381 - AluSx SINE Alu -32 280 1 399 263 32 58 chr6 178736184 178736374 -10543180 - L1MC4 LINE L1 -1035 7007 6823 778 152 8 23 chr6 178737048 178737180 -10542374 - FLAM_C SINE Alu -3 130 1 946 257 63 47 chr6 178737241 178737703 -10541851 - MER39 LTR ERV1 -23 684 5 419 316 152 15 chr6 178738468 178738804 -10540750 + L3 LINE CR1 1193 1574 -3 2676 157 128 24 chr6 178740711 178741304 -10538250 - MER39 LTR ERV1 0 707 1 320 304 20 40 chr6 178743375 178743523 -10536031 - MIR3 SINE MIR -55 153 9 1023 152 12 0 chr6 178743812 178743976 -10535578 + FRAM SINE Alu 1 166 0 208 258 65 0 chr6 178745127 178745189 -10534365 - L2 LINE L2 -4 3268 3203 239 232 40 0 chr6 178745230 178745329 -10534225 + (TA)n Simple_repeat Simple_repeat 1 103 0 2337 115 0 0 chr6 178746574 178746878 -10532676 - AluSx SINE Alu -8 304 1 1613 243 70 0 chr6 178746896 178747279 -10532275 + MER63B DNA MER1_type 3 412 -24 2574 144 11 103 chr6 178747316 178747851 -10531703 + MER66B LTR ERV1 1 486 0 287 284 27 40 chr6 178747931 178748066 -10531488 - MIR SINE MIR -26 236 104 414 211 163 72 chr6 178748066 178748232 -10531322 - MER5A DNA MER1_type 0 189 9 851 60 0 26 chr6 178748792 178748908 -10530646 + L1PA10 LINE L1 6053 6165 -3 239 305 185 0 chr6 178749369 178749520 -10530034 - MIR SINE MIR -37 225 47 239 311 14 0 chr6 178750939 178751013 -10528541 + MER63B DNA MER1_type 352 426 -9 427 265 136 12 chr6 178752039 178752201 -10527353 - MER117 DNA MER1_type -15 182 1 1166 215 95 34 chr6 178752443 178752792 -10526762 - MLT1A2 LTR MaLR 0 374 5 2259 116 0 0 chr6 178754117 178754409 -10525145 - AluSx SINE Alu -20 292 1 2185 128 3 0 chr6 178754573 178754708 -10524846 + AluSx SINE Alu 1 134 -178 2315 115 0 0 chr6 178754708 178755012 -10524542 + AluSg SINE Alu 1 304 -6 2185 128 3 0 chr6 178755012 178755180 -10524374 + AluSx SINE Alu 134 305 -7 641 213 62 12 chr6 178755647 178755807 -10523747 - MER5B DNA MER1_type -10 168 1 1824 165 27 0 chr6 178756497 178756794 -10522760 + AluSx SINE Alu 1 305 -7 1856 145 12 22 chr6 178757946 178758270 -10521284 + L1MC1 LINE L1 6013 6333 0 21 0 0 0 chr6 178758980 178759001 -10520553 + AT_rich Low_complexity Low_complexity 1 21 0 883 86 0 0 chr6 178759060 178759176 -10520378 - L1PB1 LINE L1 0 6151 6036 3579 135 86 21 chr6 178760193 178760847 -10518707 + LTR34 LTR ERV1 4 699 0 4132 133 8 14 chr6 178761352 178761990 -10517564 - MER41B LTR ERV1 -1 634 1 349 174 14 0 chr6 178762581 178762650 -10516904 - MIR SINE MIR -27 235 166 3997 100 9 4 chr6 178762653 178763202 -10516352 - MER41A LTR ERV1 0 554 3 12851 94 23 19 chr6 178763203 178765468 -10514086 - MER41A-int LTR ERV1 -1 5945 2856 4140 134 104 6 chr6 178765455 178766165 -10513389 - MER41A-int LTR ERV1 -3000 2946 2167 * 545 115 81 0 chr6 178766173 178766260 -10513294 - MER41A-int LTR ERV1 -3955 1991 1898 * 2299 141 39 6 chr6 178766257 178766612 -10512942 - MER41-int LTR ERV1 -5166 2371 2005 1354 106 46 138 chr6 178766613 178766896 -10512658 - MER41-int LTR ERV1 -5256 690 434 2102 100 21 9 chr6 178766897 178767294 -10512260 - LTR7 LTR ERV1 -2 448 1 2639 106 43 24 chr6 178767294 178767717 -10511837 - HERVH LTR ERV1 0 7713 7283 10613 171 67 77 chr6 178767720 178772592 -10506962 - HERVH LTR ERV1 -2697 5016 1 2152 93 17 9 chr6 178772600 178772993 -10506561 - LTR7 LTR ERV1 -8 442 1 2848 135 16 16 chr6 178773001 178773432 -10506122 - MER41A-int LTR ERV1 -5515 431 1 3907 122 13 6 chr6 178773432 178773982 -10505572 - MER41A LTR ERV1 0 554 1 4499 158 52 65 chr6 178773982 178774896 -10504658 - MER4D LTR ERV1 0 903 1 2405 136 17 25 chr6 178774911 178775187 -10504367 - MER57A LTR ERV1 0 403 129 5076 99 33 0 chr6 178775187 178775856 -10503698 - LTR8 LTR ERV1 0 691 1 2405 136 17 25 chr6 178775856 178775985 -10503569 - MER57A LTR ERV1 -274 129 1 252 297 55 31 chr6 178775988 178776116 -10503438 - MIR SINE MIR -111 151 21 1341 270 147 36 chr6 178776970 178777618 -10501936 + L1MC4a LINE L1 4903 4954 -1192 2126 112 0 22 chr6 178777618 178777931 -10501623 + AluSg SINE Alu 1 306 -4 1341 270 147 36 chr6 178777931 178778437 -10501117 + L1MC4a LINE L1 4954 5402 -744 194 188 29 116 chr6 178778624 178778670 -10500884 - MIR3 SINE MIR -3 205 165 611 248 131 65 chr6 178778670 178778976 -10500578 + MER102a DNA MER1_type 1 326 -4 194 188 29 116 chr6 178778976 178778998 -10500556 - MIR3 SINE MIR -43 165 143 354 277 0 40 chr6 178779052 178779153 -10500401 + L2 LINE L2 3173 3269 -3 329 244 185 0 chr6 178779231 178779366 -10500188 + MIR SINE MIR 14 173 -89 209 226 57 0 chr6 178779490 178779543 -10500011 + MIR SINE MIR 100 155 -107 15249 135 25 7 chr6 178779593 178781961 -10497593 + Tigger1 DNA MER2_type 8 2418 0 537 282 22 61 chr6 178781961 178782142 -10497412 - MIR SINE MIR -64 198 25 579 251 0 0 chr6 178782246 178782421 -10497133 + (TTG)n Simple_repeat Simple_repeat 2 176 0 615 229 0 0 chr6 178782429 178782599 -10496955 + (CTG)n Simple_repeat Simple_repeat 1 170 0 531 268 0 0 chr6 178782645 178782824 -10496730 + (CTG)n Simple_repeat Simple_repeat 1 179 0 322 280 9 9 chr6 178782824 178782931 -10496623 + (TTG)n Simple_repeat Simple_repeat 2 108 0 537 234 0 4 chr6 178782933 178783181 -10496373 + (CTG)n Simple_repeat Simple_repeat 1 246 0 594 269 0 6 chr6 178783223 178783742 -10495812 + (CTG)n Simple_repeat Simple_repeat 1 516 0 753 228 0 0 chr6 178783770 178784039 -10495515 + (CTG)n Simple_repeat Simple_repeat 1 269 0 390 242 0 0 chr6 178784061 178784185 -10495369 + (CTG)n Simple_repeat Simple_repeat 2 125 0 744 214 0 0 chr6 178784196 178784374 -10495180 + (CTG)n Simple_repeat Simple_repeat 2 179 0 280 211 0 0 chr6 178784375 178784427 -10495127 + (TTG)n Simple_repeat Simple_repeat 3 54 0 849 190 0 0 chr6 178784427 178784606 -10494948 + (CTG)n Simple_repeat Simple_repeat 1 179 0 447 253 0 0 chr6 178784628 178784782 -10494772 + (CTG)n Simple_repeat Simple_repeat 2 155 0 768 190 0 0 chr6 178784799 178784962 -10494592 + (CTG)n Simple_repeat Simple_repeat 2 164 0 798 202 0 0 chr6 178784991 178785169 -10494385 + (CTG)n Simple_repeat Simple_repeat 2 179 0 762 229 0 0 chr6 178785195 178785488 -10494066 + (CTG)n Simple_repeat Simple_repeat 1 293 0 789 208 0 0 chr6 178785516 178785694 -10493860 + (CTG)n Simple_repeat Simple_repeat 2 179 0 470 240 0 0 chr6 178785705 178785851 -10493703 + (CTG)n Simple_repeat Simple_repeat 1 146 0 748 242 2 2 chr6 178785873 178786451 -10493103 + (CTG)n Simple_repeat Simple_repeat 1 578 0 555 257 0 0 chr6 178786514 178786685 -10492869 + (CTG)n Simple_repeat Simple_repeat 1 171 0 219 146 0 0 chr6 178786734 178786775 -10492779 + (TTG)n Simple_repeat Simple_repeat 1 41 0 1880 262 100 23 chr6 178788373 178789143 -10490411 - HAL1 LINE L1 -6 2501 1673 270 239 65 22 chr6 178789196 178789288 -10490266 + LTR33A LTR ERVL 64 159 -364 2300 138 33 25 chr6 178789453 178789814 -10489740 + THE1B LTR MaLR 1 364 0 2603 75 3 39 chr6 178789829 178790188 -10489366 - MER4E LTR ERV1 0 766 421 38756 85 8 7 chr6 178790195 178796337 -10483217 + L1PA6 LINE L1 11 6153 -1 2613 130 78 5 chr6 178796337 178796760 -10482794 - MER4E LTR ERV1 -325 454 1 10816 102 13 38 chr6 178796766 178798368 -10481186 + THE1B-int LTR MaLR 19 1580 0 2373 135 34 8 chr6 178798368 178798723 -10480831 + THE1B LTR MaLR 1 364 0 505 299 79 50 chr6 178798795 178799136 -10480418 + ERVL LTR ERVL 798 1148 -4616 2463 84 0 3 chr6 178799197 178799505 -10480049 + AluY SINE Alu 1 307 -4 798 288 86 23 chr6 178799737 178800282 -10479272 + L1ME4a LINE L1 5254 5789 -332 1711 228 203 4 chr6 178800497 178801050 -10478504 + L1MD1 LINE L1 5565 6227 -15 189 0 0 0 chr6 178801086 178801107 -10478447 + (A)n Simple_repeat Simple_repeat 1 21 0 1092 177 8 76 chr6 178801292 178801529 -10478025 + MER58A DNA MER1_type 2 222 -2 197 368 56 50 chr6 178803972 178804350 -10475204 - L2 LINE L2 -42 3230 2851 2870 125 29 2 chr6 178804733 178805148 -10474406 + MSTA LTR MaLR 1 426 -2 227 205 98 62 chr6 178805213 178805325 -10474229 + L1ME4a LINE L1 5989 6104 -17 900 239 79 59 chr6 178805575 178805930 -10473624 - L1ME1 LINE L1 -5 6161 5800 247 241 190 25 chr6 178806009 178806167 -10473387 - LTR16C LTR ERVL -51 440 257 1031 284 35 52 chr6 178806385 178806903 -10472651 - L1ME1 LINE L1 -391 5779 5271 * 15266 206 36 40 chr6 178806896 178807674 -10471880 - L1MA5A LINE L1 -4 6935 6156 2042 96 58 10 chr6 178807674 178807966 -10471588 + AluSc SINE Alu 1 306 -3 15266 206 36 40 chr6 178807966 178809465 -10470089 - L1MA5A LINE L1 -783 6156 4654 2042 156 0 6 chr6 178809465 178809779 -10469775 + AluSx SINE Alu 1 312 0 15266 206 36 40 chr6 178809779 178814240 -10465314 - L1MA5A LINE L1 -2285 4654 14 1959 129 7 20 chr6 178814240 178814542 -10465012 + AluSx SINE Alu 1 298 -14 997 298 156 42 chr6 178814562 178815935 -10463619 - L1ME1 LINE L1 -896 5250 3686 312 316 43 0 chr6 178815990 178816129 -10463425 + LTR16B LTR ERVL 42 186 -278 452 229 19 9 chr6 178816230 178816335 -10463219 + LTR16B LTR ERVL 359 464 0 2627 49 29 35 chr6 178816382 178816727 -10462827 + L1PA4 LINE L1 5810 6152 -3 488 247 60 106 chr6 178816803 178817285 -10462269 - L1ME1 LINE L1 -2610 3536 3077 20751 35 2 1 chr6 178817528 178821762 -10457792 - L1PA4 LINE L1 0 6155 1917 1259 65 0 0 chr6 178821758 178821913 -10457641 + L1PA4 LINE L1 1756 1910 -4236 * 2391 84 0 0 chr6 178822499 178822797 -10456757 + AluY SINE Alu 1 298 -13 2282 78 3 7 chr6 178823129 178823444 -10456110 + AluY SINE Alu 1 314 0 264 313 92 46 chr6 178823843 178823974 -10455580 - L2 LINE L2 -5 3308 3172 255 378 10 0 chr6 178824086 178824184 -10455370 - L2 LINE L2 -195 3077 2979 4000 134 13 24 chr6 178824287 178824959 -10454595 - L1MB3 LINE L1 -2 6181 5517 2030 144 21 45 chr6 178825509 178825883 -10453671 + MLT1A1 LTR MaLR 1 365 0 559 119 9 9 chr6 178826819 178826928 -10452626 + (TC)n Simple_repeat Simple_repeat 1 109 0 188 111 28 0 chr6 178826927 178826963 -10452591 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 293 250 76 28 chr6 178826963 178827107 -10452447 - L1MB3 LINE L1 -673 5448 5298 896 126 96 0 chr6 178827473 178827653 -10451901 + AluSg/x SINE Alu 137 329 0 455 278 11 28 chr6 178829195 178829375 -10450179 + L2 LINE L2 3133 3309 -4 2157 78 6 59 chr6 178830204 178830524 -10449030 + PABL_B LTR ERV1 1 303 -364 5429 52 6 0 chr6 178832910 178833583 -10445971 + L1P LINE L1 3825 4501 -1645 8325 106 5 30 chr6 178934161 178935480 -10344074 + L1P LINE L1 1189 2474 -3672 2817 214 37 16 chr6 178935600 178936547 -10343007 + L1M4c LINE L1 2197 3166 -3216 443 130 14 0 chr6 178936558 178936627 -10342927 + L1PA12 LINE L1 7 76 -7505 231 214 71 0 chr6 178936920 178936976 -10342578 + L2 LINE L2 3254 3313 0 2491 54 0 3 chr6 178937057 178937353 -10342201 - AluY SINE Alu -16 295 1 213 282 82 12 chr6 178937456 178937541 -10342013 - L3 LINE CR1 -44 1533 1443 5688 129 25 3 chr6 178939284 178940742 -10338812 - L1PA12 LINE L1 -50 6118 4630 959 302 80 8 chr6 178940831 178941192 -10338362 - MLT1J2 LTR MaLR -22 428 42 2279 52 28 7 chr6 178942118 178942409 -10337145 + AluY SINE Alu 1 297 -14 333 0 0 0 chr6 178942776 178942813 -10336741 + (CA)n Simple_repeat Simple_repeat 2 38 0 219 274 39 0 chr6 178943003 178943054 -10336500 + MIR SINE MIR 25 77 -185 216 122 0 0 chr6 178943073 178943114 -10336440 + (TG)n Simple_repeat Simple_repeat 2 42 0 317 374 71 10 chr6 178943142 178943340 -10336214 + L2 LINE L2 2551 2760 -554 439 344 56 66 chr6 178943633 178943721 -10335833 + L2 LINE L2 2642 2729 -585 1036 183 53 163 chr6 178943721 178944078 -10335476 - MER57A LTR ERV1 -2 401 101 2099 143 0 7 chr6 178944078 178944385 -10335169 - AluJb SINE Alu -7 305 1 1036 183 53 163 chr6 178944385 178944476 -10335078 - MER57A LTR ERV1 -302 101 2 439 344 56 66 chr6 178944476 178944689 -10334865 + L2 LINE L2 2729 2940 -374 1008 248 9 5 chr6 178944706 178944920 -10334634 + MER58A DNA MER1_type 9 223 -1 180 330 102 28 chr6 178944953 178945129 -10334425 + L2 LINE L2 3006 3202 -111 2395 138 20 0 chr6 178945129 178945470 -10334084 - MER7A DNA MER2_type 0 346 1 180 330 102 28 chr6 178945470 178945508 -10334046 + L2 LINE L2 3202 3236 -77 1309 99 0 0 chr6 178945508 178945680 -10333874 - AluY SINE Alu 0 311 140 239 94 0 57 chr6 178945879 178945932 -10333622 + (TG)n Simple_repeat Simple_repeat 1 50 0 448 325 55 48 chr6 178945932 178946437 -10333117 - L1MEc LINE L1 -5228 1168 660 247 264 198 60 chr6 178948355 178948522 -10331032 + L1MCc LINE L1 673 862 -5561 22 35 0 0 chr6 178949414 178949443 -10330111 + AT_rich Low_complexity Low_complexity 1 29 0 326 285 165 0 chr6 178950373 178950531 -10329023 + L1MC5 LINE L1 7343 7526 -435 1623 222 17 25 chr6 178950541 178950897 -10328657 + MLT1A1 LTR MaLR 12 364 -1 690 195 63 73 chr6 178950897 178951184 -10328370 + L1MC5 LINE L1 7533 7816 -145 478 85 0 0 chr6 178954773 178954832 -10324722 - Alu SINE Alu -250 60 2 2289 138 24 29 chr6 178954905 178955282 -10324272 - THE1C LTR MaLR 0 375 1 360 339 36 10 chr6 178957230 178957422 -10322132 + MIR SINE MIR 66 262 0 356 297 110 55 chr6 178957771 178957856 -10321698 - MIR3 SINE MIR -13 195 116 1707 179 3 3 chr6 178957856 178958242 -10321312 - AluJb SINE Alu 0 386 1 356 297 110 55 chr6 178958242 178958336 -10321218 - MIR3 SINE MIR -92 116 4 14552 143 15 23 chr6 178958657 178960845 -10318709 + L1PA12 LINE L1 115 2560 -5021 8247 17 0 3 chr6 178960845 178962269 -10317285 + L1PA3 LINE L1 4758 6178 0 14552 143 15 23 chr6 178962269 178962756 -10316798 + L1PA12 LINE L1 2560 3049 -4532 1685 159 0 44 chr6 178963037 178963332 -10316222 + AluJb SINE Alu 1 282 -30 198 0 0 0 chr6 178963335 178963357 -10316197 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2100 133 17 0 chr6 178963818 178964119 -10315435 + AluSx SINE Alu 1 306 -6 1943 138 39 0 chr6 178964158 178964440 -10315114 + AluSq SINE Alu 1 293 -20 26 0 0 0 chr6 178964440 178964466 -10315088 + AT_rich Low_complexity Low_complexity 1 26 0 2230 122 0 3 chr6 178964787 178965098 -10314456 + AluSx SINE Alu 1 310 -2 9815 204 26 20 chr6 178965185 178967287 -10312267 + L1M1 LINE L1 802 2916 -3932 2079 148 0 0 chr6 178967287 178967591 -10311963 + AluSx SINE Alu 1 304 -8 9815 204 26 20 chr6 178967591 178967893 -10311661 + L1M1 LINE L1 2916 3215 -3633 1907 165 43 14 chr6 178967896 178968454 -10311100 + L1M1 LINE L1 5544 6258 -747 189 0 0 0 chr6 178968560 178968581 -10310973 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr6 178969387 178969410 -10310144 + AT_rich Low_complexity Low_complexity 1 23 0 336 48 0 0 chr6 178972380 178972422 -10307132 + MLT1A1 LTR MaLR 300 341 -24 270 200 94 71 chr6 178972431 178972516 -10307038 - L1M4 LINE L1 -1300 4846 4760 3298 239 18 6 chr6 178972704 178973640 -10305914 - L1M4 LINE L1 -2261 3885 2939 5762 118 26 12 chr6 178973658 178974624 -10304930 - L1PA14 LINE L1 -2 6159 5174 266 0 0 29 chr6 178974624 178974659 -10304895 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5762 118 26 12 chr6 178974659 178974678 -10304876 - L1PA14 LINE L1 -987 5174 5157 222 231 0 39 chr6 178974966 178975018 -10304536 - MIR3 SINE MIR -30 178 129 1937 137 17 0 chr6 178975130 178975423 -10304131 - AluSx SINE Alu -14 298 1 973 171 52 0 chr6 178975803 178975996 -10303558 - MER6 DNA MER2_type 0 865 663 11590 183 12 12 chr6 178976178 178979715 -10299839 - L1PB1 LINE L1 -8 6143 2606 9280 128 17 30 chr6 178979817 178980909 -10298645 - Tigger4(Zombi) DNA MER2_type -1244 1487 418 664 75 0 11 chr6 178980909 178981002 -10298552 - L1PA16 LINE L1 -9 6157 6066 9280 128 17 30 chr6 178981002 178981415 -10298139 - Tigger4(Zombi) DNA MER2_type -2313 418 1 1216 131 0 0 chr6 178982233 178982401 -10297153 - AluJb SINE Alu -9 303 136 351 0 0 0 chr6 178982402 178982441 -10297113 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1639 181 22 0 chr6 178982446 178982595 -10296959 - AluJb SINE Alu -30 282 123 225 65 0 0 chr6 178982595 178982626 -10296928 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1639 181 22 0 chr6 178982626 178982752 -10296802 - AluJb SINE Alu -189 123 1 2148 119 23 0 chr6 178983720 178984023 -10295531 + AluSg SINE Alu 1 310 0 11632 190 14 11 chr6 178984040 178986473 -10293081 - MER21-int LTR ERV1 -1711 2480 1 4616 175 33 20 chr6 178986611 178986813 -10292741 + L1MB3 LINE L1 5080 5278 -905 2410 73 0 3 chr6 178986813 178987114 -10292440 - AluY SINE Alu -9 302 3 4616 175 33 20 chr6 178987114 178987991 -10291563 + L1MB3 LINE L1 5278 6166 -17 2130 184 10 19 chr6 178989093 178989511 -10290043 - MLT2D LTR ERVL 0 414 1 815 248 47 39 chr6 178989567 178989602 -10289952 - MIR SINE MIR 0 262 229 2103 126 0 0 chr6 178989602 178989923 -10289631 - AluSq SINE Alu 0 321 1 815 248 47 39 chr6 178989923 178990140 -10289414 - MIR SINE MIR -33 229 7 25 31 0 0 chr6 178990459 178990491 -10289063 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 178990590 178990611 -10288943 + AT_rich Low_complexity Low_complexity 1 21 0 2000 257 68 40 chr6 178990628 178991319 -10288235 + HAL1b LINE L1 251 976 -372 3257 86 15 0 chr6 178991319 178991775 -10287779 - L1PA14 LINE L1 -2 6159 5697 2000 257 68 40 chr6 178991775 178992016 -10287538 + HAL1b LINE L1 976 1209 -139 2078 120 14 0 chr6 178992099 178992383 -10287171 + AluSx SINE Alu 1 288 -24 21 57 0 0 chr6 178992384 178992419 -10287135 + AT_rich Low_complexity Low_complexity 1 35 0 245 223 0 68 chr6 178992423 178992526 -10287028 + L1ME4a LINE L1 5985 6080 -41 2070 117 13 0 chr6 178993187 178993487 -10286067 - AluSg SINE Alu -6 304 1 270 73 0 0 chr6 178993907 178993948 -10285606 + (CA)n Simple_repeat Simple_repeat 2 42 0 1124 262 69 82 chr6 178993960 178994262 -10285292 + L1MC5 LINE L1 6633 6937 -1024 1811 204 27 0 chr6 178994262 178994596 -10284958 - MER2 DNA MER2_type -1 343 1 1124 262 69 82 chr6 178994596 178994977 -10284577 + L1MC5 LINE L1 6937 7307 -654 183 156 0 0 chr6 178994977 178995009 -10284545 + A-rich Low_complexity Low_complexity 1 32 0 474 314 75 42 chr6 178995584 178995823 -10283731 - MIR SINE MIR -10 252 6 231 328 117 23 chr6 178996818 178996946 -10282608 - MIR SINE MIR 0 262 123 2386 77 3 0 chr6 178997337 178997637 -10281917 + AluSp SINE Alu 1 301 -12 2409 152 12 31 chr6 178998255 178998676 -10280878 + MSTB LTR MaLR 1 413 -13 4184 167 99 34 chr6 178998677 179000030 -10279524 + pTR5 LTR ERV1 69 2295 -143 427 207 168 54 chr6 179000144 179000347 -10279207 - MER102a DNA MER1_type -26 304 79 1926 117 4 0 chr6 179000355 179000621 -10278933 - AluSp SINE Alu -9 304 38 1142 211 55 112 chr6 179000903 179001019 -10278535 - MER39 LTR ERV1 0 707 586 1898 127 7 11 chr6 179001019 179001302 -10278252 - AluSx SINE Alu -30 282 1 1142 211 55 112 chr6 179001302 179001660 -10277894 - MER39 LTR ERV1 -121 586 260 283 260 50 40 chr6 179001630 179001730 -10277824 - LTR48B LTR ERV1 -540 104 4 * 755 218 47 10 chr6 179002379 179002572 -10276982 + Zaphod DNA AcHobo 3821 4020 -11 342 0 0 0 chr6 179003222 179003260 -10276294 + (TG)n Simple_repeat Simple_repeat 2 39 0 271 231 110 11 chr6 179003455 179003546 -10276008 + Charlie7 DNA MER1_type 5 104 -2508 271 157 321 0 chr6 179003534 179003668 -10275886 + Charlie7 DNA MER1_type 2433 2609 -3 2268 91 0 19 chr6 179003840 179004158 -10275396 + AluSx SINE Alu 1 312 0 221 0 35 0 chr6 179004383 179004412 -10275142 + (TATAA)n Simple_repeat Simple_repeat 5 34 0 1032 230 15 0 chr6 179004669 179004869 -10274685 - MER58A DNA MER1_type 0 224 22 22 0 0 0 chr6 179006798 179006820 -10272734 + AT_rich Low_complexity Low_complexity 1 22 0 210 150 0 0 chr6 179007114 179007154 -10272400 + (TA)n Simple_repeat Simple_repeat 1 40 0 782 310 4 20 chr6 179007192 179007437 -10272117 + MIR SINE MIR 12 252 -10 193 304 0 0 chr6 179007626 179007682 -10271872 + MIR3 SINE MIR 149 204 -4 548 259 118 98 chr6 179007987 179008497 -10271057 - LTR33 LTR ERVL 0 521 2 1495 215 3 24 chr6 179009163 179009486 -10270068 + AluJo SINE Alu 1 317 0 2306 91 3 7 chr6 179010249 179010556 -10268998 + AluSq SINE Alu 1 306 -7 502 309 68 41 chr6 179010575 179010915 -10268639 + L1M4 LINE L1 2141 2489 -3657 587 256 0 0 chr6 179010915 179011040 -10268514 + FLAM_C SINE Alu 1 125 -18 291 54 0 0 chr6 179011059 179011096 -10268458 + (TA)n Simple_repeat Simple_repeat 2 38 0 1597 120 23 12 chr6 179011109 179011367 -10268187 - L1M2 LINE L1 -592 5720 5460 7910 171 25 18 chr6 179011541 179013597 -10265957 + L1M2 LINE L1 3708 5778 -534 615 303 72 52 chr6 179013935 179014372 -10265182 + L1ME4a LINE L1 5265 5719 -402 1515 129 34 4 chr6 179014372 179014635 -10264919 - L1MA3 LINE L1 -8 6297 6027 615 303 72 52 chr6 179014635 179014810 -10264744 + L1ME4a LINE L1 5719 5889 -232 1143 218 111 16 chr6 179014811 179015118 -10264436 + MER2 DNA MER2_type 10 345 0 195 361 0 0 chr6 179015207 179015268 -10264286 + L2 LINE L2 3188 3248 -24 247 250 98 8 chr6 179015309 179015441 -10264113 + L1ME4a LINE L1 5978 6121 0 1807 148 0 39 chr6 179015638 179015948 -10263606 + AluJb SINE Alu 9 306 -6 329 292 62 26 chr6 179016670 179016783 -10262771 - L2 LINE L2 0 3272 3156 1686 161 134 9 chr6 179016788 179017229 -10262325 + LTR54B LTR ERV1 1 496 -2 243 256 8 50 chr6 179017609 179017730 -10261824 + MLT2E LTR ERVL 509 624 -4 639 233 123 51 chr6 179018150 179018442 -10261112 + LTR16A1 LTR ERVL 1 313 -144 2593 153 36 14 chr6 179018544 179019046 -10260508 + L1MA9 LINE L1 5798 6310 -2 24 91 0 0 chr6 179019740 179019806 -10259748 + AT_rich Low_complexity Low_complexity 1 66 0 3902 187 68 9 chr6 179019927 179021291 -10258263 + L1MB7 LINE L1 4617 6124 -60 187 286 32 32 chr6 179021643 179021706 -10257848 - L2 LINE L2 0 3272 3210 2116 168 123 46 chr6 179021737 179022387 -10257167 + L1MC5 LINE L1 6991 7690 -271 259 353 90 67 chr6 179022408 179022754 -10256800 - L2 LINE L2 -91 3181 2828 2412 65 3 3 chr6 179022890 179023197 -10256357 - AluY SINE Alu -4 307 1 21 0 0 0 chr6 179025019 179025040 -10254514 + AT_rich Low_complexity Low_complexity 1 21 0 264 316 61 0 chr6 179025376 179025474 -10254080 + L2 LINE L2 3162 3265 -7 501 297 38 11 chr6 179025760 179025945 -10253609 - MARNA DNA Mariner -71 515 326 31 26 0 0 chr6 179027264 179027302 -10252252 + AT_rich Low_complexity Low_complexity 1 38 0 324 269 26 0 chr6 179027709 179027787 -10251767 - L2 LINE L2 -4 3268 3189 529 229 48 27 chr6 179028073 179028261 -10251293 - MER39 LTR ERV1 -2 705 514 2455 91 0 0 chr6 179028370 179028677 -10250877 + AluSc SINE Alu 3 309 0 13806 195 36 26 chr6 179029109 179029654 -10249900 + L1P LINE L1 1622 2160 -3986 1906 150 62 0 chr6 179029654 179029927 -10249627 - AluSg SINE Alu -20 290 1 13806 195 36 26 chr6 179029927 179032893 -10246661 + L1P LINE L1 2160 5168 -978 476 135 29 67 chr6 179032894 179032998 -10246556 + THE1C LTR MaLR 197 296 -79 710 247 44 5 chr6 179033227 179033438 -10246116 + MLT1D LTR MaLR 235 430 -75 1005 191 9 9 chr6 179033451 179033666 -10245888 + L1PBa LINE L1 2 216 -6647 * 5681 118 31 18 chr6 179033643 179034660 -10244894 + L1PBa LINE L1 1392 2422 -4441 4301 77 0 0 chr6 179034657 179035264 -10244290 - L1PA6 LINE L1 -3026 3120 2514 * 6368 72 3 3 chr6 179035259 179036173 -10243381 + L1PA6 LINE L1 3131 4044 -2102 7056 57 5 0 chr6 179036175 179037338 -10242216 + L1PA6 LINE L1 4980 6146 -8 2869 110 112 0 chr6 179037353 179037980 -10241574 + L1PBa LINE L1 2411 3108 -3754 309 64 43 0 chr6 179037982 179038029 -10241525 + Alu SINE Alu 239 287 -14 647 254 27 54 chr6 179038242 179038485 -10241069 + L1ME LINE L1 5239 5469 -693 2282 108 0 0 chr6 179038485 179038780 -10240774 + AluSg SINE Alu 1 295 -15 647 254 27 54 chr6 179038780 179038967 -10240587 + L1ME LINE L1 5469 5659 -503 199 333 150 0 chr6 179039191 179039251 -10240303 - L2 LINE L2 -18 3254 3186 1131 195 168 35 chr6 179040448 179040684 -10238870 - LTR52 LTR ERVL -3 418 215 2446 92 33 16 chr6 179040684 179041052 -10238502 + THE1C LTR MaLR 2 375 0 1131 195 168 35 chr6 179041052 179041184 -10238370 - LTR52 LTR ERVL -206 215 1 239 330 57 28 chr6 179042272 179042378 -10237176 - L2 LINE L2 -2 3311 3203 227 146 49 0 chr6 179042806 179042847 -10236707 - MLT1L LTR MaLR -417 198 156 746 191 109 67 chr6 179042860 179043070 -10236484 - MER20 DNA MER1_type 0 219 1 519 320 147 0 chr6 179043629 179043854 -10235700 - MIR SINE MIR 0 262 5 1859 135 190 11 chr6 179044730 179045093 -10234461 + MSTA LTR MaLR 1 428 0 2067 141 0 0 chr6 179046626 179046916 -10232638 + AluSx SINE Alu 1 290 -22 346 171 184 28 chr6 179046932 179047137 -10232417 - L1ME3A LINE L1 -256 5906 5596 244 312 94 5 chr6 179047539 179047741 -10231813 - L1M4 LINE L1 -1201 4945 4726 1732 167 7 3 chr6 179047750 179048049 -10231505 - Tigger1 DNA MER2_type -182 2236 1937 3124 153 10 12 chr6 179048323 179048910 -10230644 + L1MC2 LINE L1 5426 6011 -333 215 322 78 0 chr6 179049048 179049163 -10230391 + L2 LINE L2 3190 3313 0 374 316 0 26 chr6 179049776 179049931 -10229623 + L1MC/D LINE L1 5176 5326 -820 216 0 0 0 chr6 179049935 179049959 -10229595 + (A)n Simple_repeat Simple_repeat 1 24 0 2237 115 20 0 chr6 179049970 179050275 -10229279 + AluSp SINE Alu 1 311 -2 450 263 0 0 chr6 179050304 179050418 -10229136 + L1MC/D LINE L1 5454 5567 -2218 31437 43 5 2 chr6 179050419 179055290 -10224264 - L1PA5 LINE L1 -1 6153 1268 809 214 264 42 chr6 179055398 179055829 -10223725 - MER39 LTR ERV1 -175 532 6 597 275 31 19 chr6 179056248 179056397 -10223157 + MER5A DNA MER1_type 2 152 -37 339 254 72 98 chr6 179056397 179056590 -10222964 - MER5A DNA MER1_type -1 188 1 534 31 0 0 chr6 179056652 179056716 -10222838 + (CA)n Simple_repeat Simple_repeat 2 65 0 551 257 122 7 chr6 179056725 179056873 -10222681 - MER96 DNA MER1_type? -2 173 9 * 836 236 20 135 chr6 179056871 179057241 -10222313 + MLT1E2 LTR MaLR 265 552 -41 23 0 0 0 chr6 179057241 179057264 -10222290 + AT_rich Low_complexity Low_complexity 1 23 0 2105 92 13 0 chr6 179057264 179057557 -10221997 - L1PB1 LINE L1 -1 6150 5851 2616 61 0 3 chr6 179057557 179057869 -10221685 + AluY SINE Alu 1 311 0 38449 65 8 5 chr6 179057878 179063996 -10215558 + L1PA5 LINE L1 11 6149 -5 387 103 0 0 chr6 179064009 179064067 -10215487 - L1PB1 LINE L1 -278 5873 5816 332 107 54 0 chr6 179064067 179064123 -10215431 + MLT1E2 LTR MaLR 568 626 0 2060 117 7 3 chr6 179064232 179064562 -10214992 - AluSx SINE Alu 0 312 1 531 274 32 23 chr6 179065186 179065405 -10214149 + L1ME LINE L1 5525 5745 -425 364 251 99 88 chr6 179065670 179065841 -10213713 + HAL1b LINE L1 629 801 -547 2785 10 0 0 chr6 179065937 179066239 -10213315 + AluYb8 SINE Alu 13 314 -4 1275 110 0 0 chr6 179066241 179066414 -10213140 + AluSg/x SINE Alu 128 300 -12 21 71 0 0 chr6 179066866 179066908 -10212646 + AT_rich Low_complexity Low_complexity 1 42 0 297 269 0 13 chr6 179067403 179067481 -10212073 + Tigger5 DNA MER2_type 1 77 -2246 317 365 35 9 chr6 179067586 179067701 -10211853 + L1ME4a LINE L1 5455 5572 -2236 21 36 0 0 chr6 179067712 179067740 -10211814 + AT_rich Low_complexity Low_complexity 1 28 0 333 309 0 9 chr6 179067761 179067871 -10211683 - LTR67 LTR ERVL -20 537 429 210 37 0 0 chr6 179068581 179068608 -10210946 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 639 108 11 0 chr6 179068728 179068821 -10210733 + FLAM_A SINE Alu 31 124 -18 345 358 60 10 chr6 179068823 179069024 -10210530 + L1ME4a LINE L1 5676 5886 -235 277 333 44 0 chr6 179070269 179070359 -10209195 - MIR3 SINE MIR -7 201 108 1873 192 56 52 chr6 179070503 179071063 -10208491 - MLT1E3 LTR MaLR -9 615 63 192 338 88 37 chr6 179072493 179072817 -10206737 + L2 LINE L2 2719 3054 -218 924 260 91 17 chr6 179072818 179073291 -10206263 - HAL1b LINE L1 -785 563 56 1132 311 61 15 chr6 179073681 179074153 -10205401 + LTR33 LTR ERVL 28 521 0 1036 300 45 18 chr6 179074216 179074616 -10204938 - LTR16C LTR ERVL 0 491 81 561 165 16 8 chr6 179075269 179075396 -10204158 - LTR37A LTR ERV1 0 426 299 11860 58 1 4 chr6 179075396 179076978 -10202576 - L1PA3 LINE L1 -4567 1579 4 * 29848 35 4 0 chr6 179076971 179081534 -10198020 + L1PA3 LINE L1 1584 6166 0 360 0 0 0 chr6 179081711 179081751 -10197803 + (TA)n Simple_repeat Simple_repeat 1 40 0 373 224 79 75 chr6 179081751 179082005 -10197549 - LTR37A LTR ERV1 -118 308 54 8484 95 6 0 chr6 179083110 179084335 -10195219 + L1P LINE L1 1 1232 -4914 254 268 0 0 chr6 179084455 179084511 -10195043 + MER5B DNA MER1_type 123 178 0 2466 102 8 35 chr6 179085122 179085496 -10194058 - THE1B LTR MaLR 0 364 1 595 170 7 106 chr6 179085558 179085699 -10193855 - FLAM_A SINE Alu -6 127 1 201 310 138 54 chr6 179085775 179086036 -10193518 + L2 LINE L2 2380 2662 -652 1796 168 29 11 chr6 179086765 179087116 -10192438 - MLT1A1 LTR MaLR -7 358 2 274 182 91 23 chr6 179087302 179087390 -10192164 - L1MC5 LINE L1 -136 7825 7732 315 279 81 27 chr6 179087438 179087549 -10192005 - L1MC4 LINE L1 -292 7750 7634 376 241 69 40 chr6 179087573 179087747 -10191807 - L1MC5 LINE L1 -518 7443 7265 335 220 18 28 chr6 179087802 179087911 -10191643 + MLT1H1 LTR MaLR 12 119 -436 1076 295 33 13 chr6 179087984 179088442 -10191112 - L1MC4a LINE L1 -1755 6053 5587 499 258 108 10 chr6 179088785 179089080 -10190474 - L1MC4 LINE L1 0 8042 7719 301 300 49 27 chr6 179089253 179089476 -10190078 - L1P LINE L1 -2230 3916 3689 915 306 87 50 chr6 179089495 179090386 -10189168 - L1MC4a LINE L1 -2464 3682 2751 2061 122 0 11 chr6 179090386 179090695 -10188859 - AluSx SINE Alu 0 306 1 915 306 87 50 chr6 179090695 179090772 -10188782 - L1MC4a LINE L1 -3395 2751 2678 478 259 151 39 chr6 179090781 179091086 -10188468 - L1MC4a LINE L1 -3623 2523 2185 239 282 45 9 chr6 179091095 179091205 -10188349 - L1ME4a LINE L1 -5 6116 6003 21 36 0 0 chr6 179091244 179091272 -10188282 + AT_rich Low_complexity Low_complexity 1 28 0 300 264 23 0 chr6 179091528 179091615 -10187939 + MER94 DNA DNA 3 91 -43 375 245 0 32 chr6 179091616 179091710 -10187844 - MIR SINE MIR -97 165 75 714 263 0 7 chr6 179091724 179091876 -10187678 - FRAM SINE Alu -25 151 1 393 266 0 0 chr6 179091877 179091956 -10187598 - MIR SINE MIR -174 88 10 365 178 38 21 chr6 179091971 179092079 -10187475 - L1MB5 LINE L1 -37 6137 6024 1593 117 0 8 chr6 179092079 179092343 -10187211 - L1MA4 LINE L1 -1 6299 6038 2464 54 0 0 chr6 179094160 179094480 -10185074 - AluY SINE Alu 0 320 1 37068 79 9 6 chr6 179094482 179100604 -10178950 - L1PA6 LINE L1 -4 6150 11 1997 160 80 17 chr6 179100611 179101024 -10178530 - L1MA4A LINE L1 -253 6050 5612 1149 144 0 0 chr6 179101025 179101192 -10178362 - AluSc SINE Alu -3 306 140 418 281 52 33 chr6 179152084 179152237 -10127317 + LTR16C LTR ERVL 71 226 -265 4244 183 33 31 chr6 179152441 179153427 -10126127 + L1MD2 LINE L1 5147 6130 -229 202 259 12 24 chr6 179154465 179154550 -10125004 + C-rich Low_complexity Low_complexity 6 89 0 470 265 53 37 chr6 179155563 179155752 -10123802 + MIR SINE MIR 33 224 -38 4094 126 32 5 chr6 179155752 179156439 -10123115 + L1MA5A LINE L1 5223 5925 -372 1216 134 39 65 chr6 179156448 179156680 -10122874 + MER50 LTR ERV1 9 234 -500 * 1890 113 3 14 chr6 179156678 179156960 -10122594 + MER50 LTR ERV1 433 711 -23 2163 146 11 11 chr6 179156961 179157325 -10122229 + L1MA5A LINE L1 5923 6286 -11 2390 133 0 6 chr6 179157338 179157698 -10121856 + L1MA6 LINE L1 5943 6300 0 182 258 0 48 chr6 179157705 179157767 -10121787 + MIR SINE MIR 204 262 0 276 321 127 8 chr6 179157794 179157928 -10121626 + MIR SINE MIR 5 154 -108 913 180 33 16 chr6 179159008 179159191 -10120363 - MLT1A2 LTR MaLR 0 374 189 180 0 0 0 chr6 179159227 179159247 -10120307 + (TG)n Simple_repeat Simple_repeat 2 21 0 709 236 25 6 chr6 179159305 179159466 -10120088 + MSTD LTR MaLR 233 396 0 212 260 0 0 chr6 179159495 179159545 -10120009 + L2 LINE L2 1899 1948 -1366 27 49 0 0 chr6 179159797 179159838 -10119716 + AT_rich Low_complexity Low_complexity 1 41 0 1948 162 0 6 chr6 179159884 179160198 -10119356 - AluSx SINE Alu 0 312 1 2360 66 0 23 chr6 179160300 179160602 -10118952 + AluY SINE Alu 1 295 -16 267 333 58 51 chr6 179161964 179162120 -10117434 - MIR SINE MIR -55 207 51 1773 197 154 18 chr6 179162205 179162652 -10116902 - LTR36 LTR ERV1 0 611 104 239 274 214 19 chr6 179164002 179164268 -10115286 + L2 LINE L2 1640 1957 -1357 2051 161 6 11 chr6 179165007 179165361 -10114193 + LTR60 LTR ERV1 2 353 -233 786 310 90 44 chr6 179165595 179166213 -10113341 + L1PA12 LINE L1 1228 2080 -5501 1638 119 20 12 chr6 179166259 179166503 -10113051 + MLT2A2 LTR ERVL 173 418 -35 412 111 0 0 chr6 179166563 179166626 -10112928 + MLT2A2 LTR ERVL 382 444 0 394 94 0 0 chr6 179166626 179166679 -10112875 + HERVL-A2 LTR ERVL 1 53 -5601 277 337 84 37 chr6 179167499 179167689 -10111865 + L1MCc LINE L1 368 566 -5857 2206 276 68 32 chr6 179167766 179170227 -10109327 + L1MCc LINE L1 676 3502 -3439 1664 221 67 0 chr6 179170240 179170615 -10108939 + L1P LINE L1 3454 3853 -2293 430 44 0 7 chr6 179170632 179170692 -10108862 - MLT2A2 LTR ERVL 0 453 402 631 0 126 0 chr6 179170695 179170854 -10108700 + (TA)n Simple_repeat Simple_repeat 2 180 0 2726 128 25 0 chr6 179170855 179171254 -10108300 - MLT2A2 LTR ERVL -44 409 1 1656 72 3 118 chr6 179171254 179171558 -10107996 - HERVL-A2 LTR ERVL 0 5654 5386 29138 80 4 4 chr6 179171560 179174143 -10105411 - HERVL-A2 LTR ERVL -1937 3717 1134 2093 141 0 0 chr6 179174143 179174441 -10105113 - AluSc SINE Alu -11 298 1 29138 80 4 4 chr6 179174441 179175575 -10103979 - HERVL-A2 LTR ERVL -4520 1134 1 397 91 0 45 chr6 179175575 179175641 -10103913 - MLT2A2 LTR ERVL 0 453 391 1638 119 20 12 chr6 179175701 179175945 -10103609 - MLT2A2 LTR ERVL -35 418 173 827 314 71 52 chr6 179175991 179176608 -10102946 - L1PA12 LINE L1 -5725 1856 1228 2076 158 6 11 chr6 179176842 179177196 -10102358 - LTR60 LTR ERV1 -233 353 2 187 274 214 19 chr6 179177935 179178201 -10101353 - L2 LINE L2 -1357 1957 1640 1765 199 154 18 chr6 179179551 179179998 -10099556 + LTR36 LTR ERV1 104 611 0 228 333 58 51 chr6 179180083 179180239 -10099315 + MIR SINE MIR 51 207 -55 21 36 0 0 chr6 179180871 179180899 -10098655 + AT_rich Low_complexity Low_complexity 1 28 0 1835 164 7 0 chr6 179181676 179181975 -10097579 + AluSx SINE Alu 5 305 -7 34 0 0 0 chr6 179182027 179182061 -10097493 + AT_rich Low_complexity Low_complexity 1 34 0 1737 139 23 4 chr6 179182066 179182325 -10097229 + AluSg SINE Alu 1 264 -46 423 0 0 0 chr6 179182329 179182376 -10097178 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 833 207 29 6 chr6 179183582 179183756 -10095798 + L1MB4 LINE L1 6003 6180 0 397 267 75 20 chr6 179183757 179183903 -10095651 - MIR SINE MIR -3 259 106 783 159 7 32 chr6 179185350 179185663 -10093891 + (ATGGTG)n Simple_repeat Simple_repeat 1 305 0 667 166 0 43 chr6 179185688 179185875 -10093679 + (TGG)n Simple_repeat Simple_repeat 1 179 0 195 250 0 0 chr6 179185876 179185944 -10093610 + (ATGGTG)n Simple_repeat Simple_repeat 1 68 0 317 270 51 16 chr6 179185951 179186083 -10093471 - MIR SINE MIR -56 152 22 236 222 322 41 chr6 179186115 179186286 -10093268 + MLT1K LTR MaLR 16 234 -354 381 155 83 12 chr6 179186472 179186556 -10092998 + MLT1K LTR MaLR 490 579 -9 231 250 0 29 chr6 179186497 179186565 -10092989 + LTR67 LTR ERVL 492 557 0 * 254 268 87 11 chr6 179186667 179186796 -10092758 - MIR SINE MIR -61 147 13 * 350 261 70 0 chr6 179186780 179186895 -10092659 + MIR SINE MIR 108 230 -32 16506 192 14 9 chr6 179187892 179191809 -10087745 + L1PA14 LINE L1 2272 6216 -1368 207 0 0 0 chr6 179191809 179191832 -10087722 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 16506 192 14 9 chr6 179191832 179191937 -10087617 + L1PA14 LINE L1 6216 6319 -1265 5892 128 4 6 chr6 179191939 179192843 -10086711 + L1PA14 LINE L1 6692 7594 -5 2261 96 0 32 chr6 179194680 179194993 -10084561 - AluSx SINE Alu -9 303 1 22 0 0 0 chr6 179196377 179196399 -10083155 + AT_rich Low_complexity Low_complexity 1 22 0 43800 34 21 1 chr6 179196410 179202442 -10077112 - L1PA3 LINE L1 0 6155 1 455 249 63 48 chr6 179203154 179203343 -10076211 + MIR SINE MIR 33 224 -38 6086 136 29 8 chr6 179203346 179204392 -10075162 + L1MA5A LINE L1 5224 6291 -6 1088 145 21 16 chr6 179204402 179204595 -10074959 + L1MA6 LINE L1 5937 6130 -170 2267 127 14 8 chr6 179204606 179204969 -10074585 + L1MA6 LINE L1 5936 6300 0 359 296 121 0 chr6 179205079 179205211 -10074343 + MIR SINE MIR 8 155 -107 2548 60 0 0 chr6 179205910 179206208 -10073346 - AluY SINE Alu -13 298 1 1334 179 22 116 chr6 179206588 179206825 -10072729 - MLT1A2 LTR MaLR 0 374 191 216 67 0 0 chr6 179206825 179206855 -10072699 + (TG)n Simple_repeat Simple_repeat 2 31 0 1334 179 22 116 chr6 179206855 179207030 -10072524 - MLT1A2 LTR MaLR -183 191 1 225 125 83 42 chr6 179207031 179207079 -10072475 - Charlie8 DNA MER1_type 0 2417 2368 458 234 224 106 chr6 179207819 179207863 -10071691 + MSTD LTR MaLR 1 38 -358 1970 148 10 0 chr6 179207863 179208168 -10071386 - AluJb SINE Alu -4 308 1 458 234 224 106 chr6 179208168 179208444 -10071110 + MSTD LTR MaLR 38 359 -37 233 297 16 0 chr6 179209582 179209646 -10069908 + MER69 DNA AcHobo 2 66 -1160 988 275 189 8 chr6 179209647 179210149 -10069405 + MLT1G1 LTR MaLR 3 595 0 * 1349 237 135 6 chr6 179210149 179210503 -10069051 + MER69 DNA AcHobo 61 461 -2065 2555 80 0 3 chr6 179210515 179210851 -10068703 + L1PA13 LINE L1 5829 6163 0 955 223 110 13 chr6 179210907 179211225 -10068329 + MER69 DNA AcHobo 2010 2358 -168 624 311 135 28 chr6 179211259 179211628 -10067926 + L2 LINE L2 1870 2198 -1116 826 221 75 24 chr6 179211628 179211841 -10067713 - MER58A DNA MER1_type 0 224 1 624 311 135 28 chr6 179211841 179212139 -10067415 + L2 LINE L2 2198 2608 -706 347 334 79 58 chr6 179212302 179212370 -10067184 + L2 LINE L2 2897 2962 -310 3119 103 11 7 chr6 179212370 179212816 -10066738 - MER83 LTR ERV1 0 448 1 347 334 79 58 chr6 179212816 179213076 -10066478 + L2 LINE L2 2962 3232 -40 546 258 56 24 chr6 179213653 179213866 -10065688 - L1MD3 LINE L1 -4 7991 7772 1811 182 0 25 chr6 179214302 179214621 -10064933 + AluJb SINE Alu 2 312 0 2391 97 0 3 chr6 179215410 179215720 -10063834 - AluSg SINE Alu -1 309 1 4309 149 27 13 chr6 179215857 179216603 -10062951 + Tigger2 DNA MER2_type 2 757 -1961 1058 137 174 5 chr6 179216659 179216878 -10062676 + Tigger2 DNA MER2_type 2453 2708 -10 21 36 0 0 chr6 179219055 179219083 -10060471 + AT_rich Low_complexity Low_complexity 1 28 0 184 318 93 9 chr6 179219706 179219813 -10059741 - MIR SINE MIR -55 207 92 1027 190 75 8 chr6 179219967 179220220 -10059334 - L1MB8 LINE L1 -6 6172 5903 1204 129 4 49 chr6 179222693 179222918 -10056636 - L1PA16 LINE L1 0 6166 5952 245 192 19 0 chr6 179224509 179224561 -10054993 + CT-rich Low_complexity Low_complexity 2 54 0 211 375 87 0 chr6 179224646 179224750 -10054804 + MIR3 SINE MIR 73 185 -23 28 29 0 0 chr6 179224759 179224794 -10054760 + AT_rich Low_complexity Low_complexity 1 35 0 192 287 223 25 chr6 179226220 179226377 -10053177 + L2 LINE L2 2877 3064 -208 415 279 100 60 chr6 179227325 179227594 -10051960 + L2 LINE L2 3034 3313 0 1186 179 182 27 chr6 179227922 179228219 -10051335 + MER2 DNA MER2_type 2 344 0 556 275 88 16 chr6 179229090 179229161 -10050393 + MIR SINE MIR 28 92 -170 180 0 0 0 chr6 179229161 179229181 -10050373 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 556 275 88 16 chr6 179229181 179229302 -10050252 + MIR SINE MIR 92 234 -28 2217 109 7 0 chr6 179229964 179230258 -10049296 - AluSp SINE Alu -16 297 2 21 95 0 0 chr6 179230384 179230447 -10049107 + AT_rich Low_complexity Low_complexity 1 63 0 301 311 0 0 chr6 179231777 179231851 -10047703 + MER5A DNA MER1_type 9 82 -107 759 190 7 36 chr6 179233007 179233144 -10046410 + FLAM_A SINE Alu 1 133 0 207 214 86 71 chr6 179233204 179233274 -10046280 + L2 LINE L2 3193 3263 -9 2198 91 3 7 chr6 179234660 179234947 -10044607 + AluSg SINE Alu 1 286 -24 2092 242 53 40 chr6 179235615 179237098 -10042456 - L1MEc LINE L1 -3328 3613 2150 2210 135 3 0 chr6 179237098 179237409 -10042145 - AluSx SINE Alu 0 312 1 2092 242 53 40 chr6 179237409 179238864 -10040690 - L1MEc LINE L1 -4791 2150 357 204 182 0 0 chr6 179239680 179239724 -10039830 + (TA)n Simple_repeat Simple_repeat 1 44 0 255 245 11 53 chr6 179239725 179239819 -10039735 + L1MC4 LINE L1 6614 6703 -1339 195 164 49 0 chr6 179239819 179239880 -10039674 + (TA)n Simple_repeat Simple_repeat 2 65 0 2074 269 115 51 chr6 179240042 179241664 -10037890 + L1ME2 LINE L1 101 1617 -4598 1827 106 0 0 chr6 179241664 179241899 -10037655 + AluSg SINE Alu 40 274 -36 243 0 0 0 chr6 179241900 179241927 -10037627 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2074 269 115 51 chr6 179241927 179243188 -10036366 + L1ME2 LINE L1 1616 3131 -3084 921 232 22 22 chr6 179243191 179243415 -10036139 + Charlie1 DNA MER1_type 3 226 -2535 638 153 76 15 chr6 179243412 179243543 -10036011 + Charlie1 DNA MER1_type 2623 2761 0 * 5056 245 67 49 chr6 179243554 179246588 -10032966 + L1ME2 LINE L1 3139 6225 -8 3609 216 57 9 chr6 179249053 179249865 -10029689 - MER21B LTR ERV1 -1 862 12 21 0 0 0 chr6 179250214 179250235 -10029319 + AT_rich Low_complexity Low_complexity 1 21 0 2200 127 0 13 chr6 179250248 179250562 -10028992 + AluSq SINE Alu 1 310 -3 186 43 0 0 chr6 179251436 179251459 -10028095 + (A)n Simple_repeat Simple_repeat 1 23 0 204 125 0 0 chr6 179253072 179253104 -10026450 + (CA)n Simple_repeat Simple_repeat 1 32 0 186 103 0 0 chr6 179253185 179253214 -10026340 + (ATGGTG)n Simple_repeat Simple_repeat 3 31 0 25 51 0 0 chr6 179253834 179253873 -10025681 + AT_rich Low_complexity Low_complexity 1 39 0 249 190 35 17 chr6 179255349 179255407 -10024147 + CT-rich Low_complexity Low_complexity 2 60 0 196 267 158 0 chr6 179256019 179256124 -10023430 + MIR SINE MIR 25 145 -63 1092 152 5 30 chr6 179256287 179256484 -10023070 + AluJo SINE Alu 120 311 -1 23 33 0 0 chr6 179256529 179256559 -10022995 + AT_rich Low_complexity Low_complexity 1 30 0 19969 174 26 9 chr6 179258358 179263584 -10015970 - L1PA14 LINE L1 -4 7595 2272 254 303 81 20 chr6 179264131 179264230 -10015324 + MIR SINE MIR 22 126 -82 357 257 71 0 chr6 179264515 179264628 -10014926 - MIR SINE MIR -32 230 110 268 256 57 21 chr6 179264614 179264715 -10014839 + MIR SINE MIR 13 115 -93 * 2190 91 0 0 chr6 179264715 179264989 -10014565 + AluSg SINE Alu 1 274 -36 902 94 14 0 chr6 179264995 179265133 -10014421 + (GAAA)n Simple_repeat Simple_repeat 4 143 0 336 64 0 0 chr6 179265133 179265180 -10014374 + (GGGA)n Simple_repeat Simple_repeat 1 47 0 225 256 0 39 chr6 179265324 179265402 -10014152 - LTR67 LTR ERVL 0 557 483 * 376 156 78 33 chr6 179265333 179265423 -10014131 - MLT1K LTR MaLR -9 579 486 365 259 196 14 chr6 179265787 179265930 -10013624 + MIR SINE MIR 19 187 -75 186 103 0 0 chr6 179265939 179265968 -10013586 + (CAT)n Simple_repeat Simple_repeat 3 31 0 692 214 6 0 chr6 179266015 179266193 -10013361 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 846 149 23 6 chr6 179266208 179266383 -10013171 + (CACCAT)n Simple_repeat Simple_repeat 3 180 0 558 208 0 27 chr6 179266429 179266612 -10012942 + (CCA)n Simple_repeat Simple_repeat 1 178 0 227 241 172 52 chr6 179267668 179267842 -10011712 + L1ME LINE L1 5388 5582 -584 458 294 68 25 chr6 179268012 179268175 -10011379 + MIR SINE MIR 90 259 -3 876 202 29 0 chr6 179268176 179268349 -10011205 - L1MB4 LINE L1 0 6180 6003 654 97 52 13 chr6 179273434 179273588 -10005966 + (TCTA)n Simple_repeat Simple_repeat 1 160 0 855 245 73 11 chr6 179274877 179275138 -10004416 + MER63B DNA MER1_type 2 278 -158 4010 239 56 36 chr6 179275138 179276827 -10002727 + L1MB5 LINE L1 2030 3755 -3810 855 189 31 46 chr6 179276828 179276979 -10002575 + MER46A DNA MER2_type 1 150 -2581 1974 123 46 85 chr6 179276979 179277369 -10002185 - THE1C LTR MaLR 0 375 1 855 189 31 46 chr6 179277369 179277413 -10002141 + MER46A DNA MER2_type 150 193 -43 387 188 88 0 chr6 179277427 179277507 -10002047 + MER46A DNA MER2_type 149 235 -1 2732 29 3 0 chr6 179277529 179277837 -10001717 + AluY SINE Alu 1 309 -2 5330 198 34 26 chr6 179277838 179279323 -10000231 + L1MB5 LINE L1 3775 5271 -2294 227 327 20 10 chr6 179279346 179279447 -10000107 + (TATATG)n Simple_repeat Simple_repeat 6 107 0 2773 147 42 0 chr6 179279466 179279968 -9999586 + L1MA9 LINE L1 5789 6311 -1 273 207 171 0 chr6 179279987 179280098 -9999456 + L1MB5 LINE L1 6571 6700 -865 824 179 0 7 chr6 179280100 179280245 -9999309 + FRAM SINE Alu 1 144 -32 239 111 0 148 chr6 179280251 179280305 -9999249 - MER75 DNA T2_type 0 504 459 2432 182 96 0 chr6 179280346 179281064 -9998490 + L1MB5 LINE L1 6691 7592 -1 887 251 129 27 chr6 179281119 179281561 -9997993 + HAL1 LINE L1 1703 2189 -318 314 137 60 28 chr6 179281590 179281847 -9997707 + (TG)n Simple_repeat Simple_repeat 1 265 0 275 88 105 18 chr6 179281911 179281968 -9997586 - MSTA LTR MaLR 0 428 367 202 259 12 24 chr6 179283896 179283981 -9995573 + C-rich Low_complexity Low_complexity 6 89 0 472 267 52 37 chr6 179284994 179285185 -9994369 + MIR SINE MIR 33 226 -36 3745 126 32 5 chr6 179285185 179285870 -9993684 + L1MA5A LINE L1 5225 5925 -372 1119 134 39 65 chr6 179285879 179286111 -9993443 + MER50 LTR ERV1 9 234 -500 * 1754 113 3 14 chr6 179286109 179286391 -9993163 + MER50 LTR ERV1 433 711 -23 1997 143 11 11 chr6 179286392 179286756 -9992798 + L1MA5A LINE L1 5923 6286 -11 2201 133 0 6 chr6 179286770 179287130 -9992424 + L1MA6 LINE L1 5943 6300 0 189 258 0 48 chr6 179287137 179287199 -9992355 + MIR SINE MIR 204 262 0 322 306 127 8 chr6 179287226 179287360 -9992194 + MIR SINE MIR 5 154 -108 832 180 33 16 chr6 179288439 179288622 -9990932 - MLT1A2 LTR MaLR 0 374 189 180 0 0 0 chr6 179288658 179288678 -9990876 + (TG)n Simple_repeat Simple_repeat 2 21 0 645 236 25 6 chr6 179288736 179288897 -9990657 + MSTD LTR MaLR 233 396 0 214 260 0 0 chr6 179288926 179288976 -9990578 + L2 LINE L2 1899 1948 -1366 27 49 0 0 chr6 179289228 179289269 -9990285 + AT_rich Low_complexity Low_complexity 1 41 0 1990 159 0 6 chr6 179289315 179289629 -9989925 - AluSx SINE Alu 0 312 1 2336 66 0 23 chr6 179289731 179290034 -9989520 + AluY SINE Alu 1 296 -15 198 167 0 0 chr6 179291331 179291367 -9988187 + (CATA)n Simple_repeat Simple_repeat 2 37 0 272 285 16 65 chr6 179291416 179291539 -9988015 - MIR SINE MIR -98 164 48 2032 157 168 28 chr6 179291620 179291682 -9987872 - LTR36 LTR ERV1 0 611 559 2477 62 7 7 chr6 179291682 179291991 -9987563 + AluY SINE Alu 1 309 -2 2032 157 168 28 chr6 179291991 179292464 -9987090 - LTR36 LTR ERV1 -52 559 1 816 208 125 6 chr6 179292480 179292721 -9986833 - L1MB8 LINE L1 -6 6172 5906 9718 185 69 45 chr6 179293920 179296931 -9982623 + HERVH LTR ERV1 1901 5020 -2693 2716 104 7 11 chr6 179296935 179297368 -9982186 + HERVH LTR ERV1 7283 7713 0 895 87 18 11 chr6 179297368 179297548 -9982006 + LTR7 LTR ERV1 1 230 -220 2841 174 5 25 chr6 179298120 179298467 -9981087 + LTR60 LTR ERV1 2 334 -252 2112 146 30 25 chr6 179298467 179298829 -9980725 + THE1B LTR MaLR 1 364 0 2841 174 5 25 chr6 179298829 179299078 -9980476 + LTR60 LTR ERV1 334 586 0 896 130 21 143 chr6 179299340 179299578 -9979976 - L1PA16 LINE L1 -9 6157 5949 225 0 0 0 chr6 179300311 179300336 -9979218 + (A)n Simple_repeat Simple_repeat 1 25 0 398 220 0 11 chr6 179300730 179300821 -9978733 + MLT1C LTR MaLR 378 467 0 323 241 41 122 chr6 179301248 179301542 -9978012 - L1M4 LINE L1 -917 5229 4960 594 258 82 7 chr6 179301844 179302123 -9977431 + MER114 LTR ERV 180 479 -169 24 85 0 0 chr6 179302173 179302232 -9977322 + AT_rich Low_complexity Low_complexity 1 59 0 264 228 18 0 chr6 179302315 179302372 -9977182 - MER94 DNA DNA -76 58 1 27 0 0 0 chr6 179302476 179302503 -9977051 + AT_rich Low_complexity Low_complexity 1 27 0 332 289 114 7 chr6 179302967 179303116 -9976438 + L1M4 LINE L1 3673 3837 -2309 650 47 12 0 chr6 179303187 179303272 -9976282 - 5S rRNA rRNA -32 89 4 294 260 90 20 chr6 179303412 179303512 -9976042 + MIR SINE MIR 16 122 -140 2215 136 25 32 chr6 179303523 179303929 -9975625 + MER57A LTR ERV1 1 403 0 2798 79 18 83 chr6 179304017 179304468 -9975086 + MER4E LTR ERV1 3 421 -345 2147 125 3 0 chr6 179304468 179304764 -9974790 - AluSq SINE Alu -16 297 1 2798 79 18 83 chr6 179304764 179304804 -9974750 + MER4E LTR ERV1 421 462 -304 4715 50 12 0 chr6 179304808 179305389 -9974165 + LTR10C LTR ERV1 4 591 0 835 237 38 42 chr6 179305415 179305677 -9973877 + LTR10C-int LTR ERV1 28 288 -6361 21 0 0 0 chr6 179305952 179305973 -9973581 + GC_rich Low_complexity Low_complexity 1 21 0 251 224 224 20 chr6 179306223 179306375 -9973179 + LTR10C-int LTR ERV1 504 686 -5963 286 211 174 37 chr6 179306589 179306750 -9972804 + LTR23-int LTR ERV1 504 686 -5963 233 293 0 0 chr6 179307260 179307318 -9972236 + GA-rich Low_complexity Low_complexity 3 60 0 281 281 12 0 chr6 179307359 179307441 -9972113 + GA-rich Low_complexity Low_complexity 1 83 0 284 174 139 64 chr6 179307442 179307614 -9971940 + HERVKC4 LTR ERVK 2619 2803 -2459 * 3452 101 29 5 chr6 179307503 179308124 -9971430 + LTR23-int LTR ERV1 1902 2537 -4359 4519 273 46 48 chr6 179308312 179310204 -9969350 + LTR23-int LTR ERV1 4363 6250 -399 336 286 9 9 chr6 179310338 179310443 -9969111 + LTR23-int LTR ERV1 7360 7464 -321 1186 130 50 11 chr6 179310444 179310684 -9968870 - MER4A LTR ERV1 -82 582 275 547 97 11 21 chr6 179310691 179310784 -9968770 - MER4A LTR ERV1 -572 92 1 1766 110 10 20 chr6 179310786 179311086 -9968468 + LTR23-int LTR ERV1 546 842 -6695 279 272 0 48 chr6 179311193 179311296 -9968258 + LTR23-int LTR ERV1 2553 2650 -3681 336 161 0 0 chr6 179311329 179311391 -9968163 + MER34C LTR ERV1 155 216 -369 384 214 73 68 chr6 179311550 179311770 -9967784 + LTR23-int LTR ERV1 1833 2053 -4545 267 145 16 0 chr6 179311767 179311829 -9967725 + LTR23-int LTR ERV1 2918 2980 -2966 * 511 200 0 0 chr6 179311849 179311944 -9967610 + LTR23-int LTR ERV1 3247 3341 -2990 321 194 0 41 chr6 179311983 179312081 -9967473 + LTR23-int LTR ERV1 3348 3441 -2890 363 88 0 0 chr6 179312186 179312243 -9967311 + LTR23-int LTR ERV1 2832 2888 -3870 459 181 29 35 chr6 179312340 179312511 -9967043 + LTR23-int LTR ERV1 1926 2095 -3028 2033 97 17 0 chr6 179312516 179312815 -9966739 + MER41A LTR ERV1 1 304 -250 266 167 0 0 chr6 179312814 179312862 -9966692 + MER41B LTR ERV1 588 635 0 * 3661 143 40 5 chr6 179312945 179313565 -9965989 + LTR49-int LTR ERV1 1 642 -5304 6750 156 72 77 chr6 179313565 179314472 -9965082 + LTR49-int LTR ERV1 1081 1991 -5214 336 98 0 0 chr6 179314472 179314523 -9965031 + AluSc SINE Alu 243 293 -6 6750 156 72 77 chr6 179314523 179315971 -9963583 + LTR49-int LTR ERV1 1991 5708 -1497 4642 96 28 20 chr6 179315966 179316673 -9962881 + MER41A-int LTR ERV1 5232 5944 -2 * 3926 107 7 0 chr6 179316673 179317223 -9962331 + MER41A LTR ERV1 1 554 0 1219 195 69 84 chr6 179317223 179317817 -9961737 + LTR49-int LTR ERV1 3550 4134 -2197 13210 112 22 51 chr6 179317825 179318647 -9960907 + LTR49-int LTR ERV1 4853 5697 -1840 2547 140 165 15 chr6 179318647 179318752 -9960802 + MER4A LTR ERV1 1 89 -511 237 33 0 0 chr6 179318752 179318782 -9960772 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 2547 140 165 15 chr6 179318782 179319196 -9960358 + MER4A LTR ERV1 89 598 -2 13210 112 22 51 chr6 179319196 179320728 -9958826 + LTR49-int LTR ERV1 5697 7140 -397 651 124 16 33 chr6 179320732 179320853 -9958701 + LTR54B LTR ERV1 13 131 -367 1338 125 31 0 chr6 179320853 179321077 -9958477 + LTR49-int LTR ERV1 7279 7509 -28 285 164 30 0 chr6 179321086 179321153 -9958401 + MER57B LTR ERV1 366 434 0 317 270 36 36 chr6 179321153 179321264 -9958290 + MIR SINE MIR 131 241 -21 2280 128 25 30 chr6 179321326 179321633 -9957921 - MER57A LTR ERV1 0 403 96 2089 137 33 36 chr6 179321633 179321998 -9957556 + THE1B LTR MaLR 1 364 0 2280 128 25 30 chr6 179321998 179322066 -9957488 - MER57A LTR ERV1 -307 96 28 1770 132 82 25 chr6 179322066 179322421 -9957133 - THE1C LTR MaLR 0 375 1 2280 128 25 30 chr6 179322421 179322449 -9957105 - MER57A LTR ERV1 -375 28 1 432 329 120 17 chr6 179322926 179323343 -9956211 - L2 LINE L2 -1 3312 2853 3122 171 56 35 chr6 179323445 179324157 -9955397 + LTR8A LTR ERV1 1 727 0 2836 160 10 26 chr6 179324288 179324911 -9954643 + MER4B LTR ERV1 1 779 0 39 22 0 0 chr6 179325403 179325449 -9954105 + AT_rich Low_complexity Low_complexity 1 46 0 312 333 0 0 chr6 179327299 179327401 -9952153 + MIR3 SINE MIR 98 199 -9 21 36 0 0 chr6 179328103 179328131 -9951423 + AT_rich Low_complexity Low_complexity 1 28 0 2700 234 23 11 chr6 179328517 179329161 -9950393 + MER82 DNA MER2_type 2 653 0 296 270 169 0 chr6 179329183 179329272 -9950282 + L2 LINE L2 3134 3237 -35 624 202 50 0 chr6 179331170 179331314 -9948240 - L1ME LINE L1 -377 5789 5642 * 1955 199 33 31 chr6 179331303 179331790 -9947764 + L1MA7 LINE L1 5778 6265 -26 23 0 0 0 chr6 179332241 179332264 -9947290 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr6 179332506 179332541 -9947013 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr6 179332706 179332733 -9946821 + AT_rich Low_complexity Low_complexity 1 27 0 2169 74 17 24 chr6 179332957 179333253 -9946301 + AluSg SINE Alu 1 294 -16 2433 61 0 3 chr6 179333542 179333839 -9945715 + AluY SINE Alu 1 296 -15 1888 123 0 0 chr6 179335021 179335289 -9944265 - AluSx SINE Alu -4 308 41 23 0 0 0 chr6 179336569 179336592 -9942962 + AT_rich Low_complexity Low_complexity 1 23 0 3689 115 83 27 chr6 179337032 179338097 -9941457 + MER11A LTR ERVK 1 1236 0 1688 35 0 0 chr6 179339340 179339586 -9939968 + L1PA5 LINE L1 5937 6182 0 228 35 0 0 chr6 179340136 179340165 -9939389 + (TATG)n Simple_repeat Simple_repeat 4 32 0 510 297 89 39 chr6 179340488 179340848 -9938706 + L1ME LINE L1 1918 2295 -4101 2133 115 6 6 chr6 179342063 179342375 -9937179 + AluSq SINE Alu 1 312 -1 316 276 48 9 chr6 179342941 179343046 -9936508 + L1ME LINE L1 4092 4200 -2015 288 268 29 36 chr6 179343273 179343413 -9936141 + L1ME LINE L1 5492 5627 -563 1569 120 120 15 chr6 179344496 179344762 -9934792 + AluSg1 SINE Alu 2 295 -14 21 82 0 0 chr6 179345626 179345675 -9933879 + AT_rich Low_complexity Low_complexity 1 49 0 489 236 166 0 chr6 179346002 179346159 -9933395 + MER5A DNA MER1_type 7 189 0 241 322 0 11 chr6 179346308 179346395 -9933159 + GA-rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr6 179346895 179346916 -9932638 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 179347182 179347203 -9932351 + AT_rich Low_complexity Low_complexity 1 21 0 776 244 145 50 chr6 179347289 179347495 -9932059 - HAL1 LINE L1 -85 2422 2237 378 100 0 0 chr6 179347495 179347555 -9931999 + (CA)n Simple_repeat Simple_repeat 2 61 0 776 244 145 50 chr6 179347555 179348005 -9931549 - HAL1 LINE L1 -270 2237 1704 287 360 17 52 chr6 179348200 179348433 -9931121 - HAL1 LINE L1 -1611 896 672 280 313 62 34 chr6 179348595 179348774 -9930780 - HAL1 LINE L1 -2099 408 225 23 78 0 0 chr6 179349231 179349282 -9930272 + AT_rich Low_complexity Low_complexity 1 51 0 280 276 61 27 chr6 179349619 179349880 -9929674 - L1 LINE L1 -1720 4426 4157 1236 322 63 11 chr6 179350447 179351145 -9928409 - MER20B DNA MER1_type -49 734 1 31 26 0 0 chr6 179351472 179351510 -9928044 + AT_rich Low_complexity Low_complexity 1 38 0 33 56 0 0 chr6 179351594 179351648 -9927906 + AT_rich Low_complexity Low_complexity 1 54 0 22 56 0 0 chr6 179351895 179351931 -9927623 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr6 179352042 179352065 -9927489 + AT_rich Low_complexity Low_complexity 1 23 0 820 267 118 20 chr6 179353377 179353925 -9925629 - L1 LINE L1 -2919 3227 2612 531 275 131 10 chr6 179354356 179354647 -9924907 - L1MDa LINE L1 -6206 334 9 1936 60 48 0 chr6 179355201 179355450 -9924104 + AluY SINE Alu 35 295 -16 1144 125 17 0 chr6 179355650 179355826 -9923728 - AluSg/x SINE Alu 0 312 134 1002 163 56 0 chr6 179355988 179356203 -9923351 - L1MA7 LINE L1 -12 6279 6053 676 205 32 0 chr6 179361995 179362151 -9917403 + L1MA5A LINE L1 5623 5783 -514 1487 171 37 104 chr6 179362158 179362590 -9916964 + MER57A LTR ERV1 1 403 0 2768 139 5 0 chr6 179362592 179363003 -9916551 - MER57B LTR ERV1 -8 426 14 2836 141 10 10 chr6 179363012 179363509 -9916045 + L1MA5A LINE L1 5798 6294 -3 1566 174 42 0 chr6 179364027 179364185 -9915369 - AluSq SINE Alu -14 299 122 189 0 0 0 chr6 179364185 179364206 -9915348 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1566 174 42 0 chr6 179364206 179364334 -9915220 - AluSq SINE Alu -191 122 1 276 247 0 56 chr6 179366874 179366963 -9912591 - MER76 LTR ERV 0 688 605 226 329 7 51 chr6 179367284 179367421 -9912133 - L2 LINE L2 -1313 2001 1871 5043 141 13 8 chr6 179367775 179367871 -9911683 - L1PA16 LINE L1 -1 6165 6071 1757 152 35 35 chr6 179367871 179368246 -9911308 + THE1C LTR MaLR 1 375 0 5043 141 13 8 chr6 179368246 179369043 -9910511 - L1PA16 LINE L1 -95 6071 5263 1439 133 72 135 chr6 179369043 179369283 -9910271 - THE1C LTR MaLR 0 375 168 1963 132 7 17 chr6 179369283 179369578 -9909976 - AluSx SINE Alu -20 292 1 1439 133 72 135 chr6 179369578 179369737 -9909817 - THE1C LTR MaLR -207 168 1 5043 141 13 8 chr6 179369737 179369881 -9909673 - L1PA16 LINE L1 -903 5263 5121 2426 230 25 30 chr6 179369876 179370538 -9909016 - L1PA13 LINE L1 -4430 2367 1691 * 1167 147 98 38 chr6 179370538 179370804 -9908750 - THE1C LTR MaLR -93 282 1 423 329 120 17 chr6 179371309 179371726 -9907828 - L2 LINE L2 -1 3312 2853 3132 171 56 35 chr6 179371828 179372540 -9907014 + LTR8A LTR ERV1 1 727 0 3014 160 10 26 chr6 179372671 179373294 -9906260 + MER4B LTR ERV1 1 779 0 39 22 0 0 chr6 179373786 179373832 -9905722 + AT_rich Low_complexity Low_complexity 1 46 0 5893 26 0 0 chr6 179378275 179378959 -9900595 - L1PA4 LINE L1 -3 6152 5469 375 242 108 0 chr6 179384919 179385113 -9894441 + L1P5 LINE L1 5222 5433 -721 246 266 16 0 chr6 179385196 179385260 -9894294 + L1ME LINE L1 5802 5866 -255 592 180 101 27 chr6 179386316 179386523 -9893031 - MER31B LTR ERV1 -137 329 1 261 88 0 0 chr6 179387644 179387678 -9891876 - Alu SINE Alu -269 34 1 * 290 233 93 35 chr6 179387678 179387762 -9891792 - MER77 LTR ERV1 -94 511 405 204 360 50 0 chr6 179387872 179387972 -9891582 + L2 LINE L2 2534 2638 -676 2628 162 63 4 chr6 179388040 179388545 -9891009 + L1MC3 LINE L1 6936 7470 -315 1421 97 0 34 chr6 179388548 179388754 -9890800 + AluSx SINE Alu 1 199 -113 544 0 0 0 chr6 179388754 179388813 -9890741 + AluY SINE Alu 65 123 -188 513 131 50 31 chr6 179390114 179390375 -9889179 + (CA)n Simple_repeat Simple_repeat 1 266 0 424 136 57 34 chr6 179390391 179390567 -9888987 + (CA)n Simple_repeat Simple_repeat 1 180 0 1206 188 0 13 chr6 179391427 179391661 -9887893 + MLT2C2 LTR ERVL 1 231 -233 1524 163 89 18 chr6 179391664 179391946 -9887608 + AluJo SINE Alu 3 304 -8 366 277 40 0 chr6 179391996 179392097 -9887457 + MER5A DNA MER1_type 1 105 -84 390 159 8 143 chr6 179392176 179392302 -9887252 + L2 LINE L2 3200 3308 -5 2260 129 0 0 chr6 179392833 179393142 -9886412 + AluSx SINE Alu 1 309 -3 1943 139 7 7 chr6 179393307 179393609 -9885945 + AluSq SINE Alu 1 302 -11 2323 68 13 39 chr6 179394160 179394469 -9885085 - AluY SINE Alu -10 301 1 534 169 0 0 chr6 179394538 179394621 -9884933 - FLAM SINE Alu -21 122 40 238 175 10 52 chr6 179394931 179395028 -9884526 + (TA)n Simple_repeat Simple_repeat 2 94 0 241 381 14 20 chr6 179395385 179395532 -9884022 + MER5B DNA MER1_type 2 147 -31 895 187 0 0 chr6 179396213 179396363 -9883191 - AluSg SINE Alu -26 284 135 234 0 0 0 chr6 179396363 179396389 -9883165 + (TA)n Simple_repeat Simple_repeat 2 27 0 345 300 0 0 chr6 179396409 179396499 -9883055 + L1MC4 LINE L1 6614 6703 -1339 747 103 86 0 chr6 179396511 179396627 -9882927 - AluSg SINE Alu -183 127 2 393 256 30 30 chr6 179397130 179397294 -9882260 - LTR37B LTR ERV1 -106 362 199 2601 30 30 0 chr6 179397491 179397789 -9881765 + AluY SINE Alu 1 307 -4 2412 140 9 91 chr6 179397807 179398270 -9881284 - MER57B LTR ERV1 -9 425 1 1048 195 32 9 chr6 179398537 179398758 -9880796 - MLT1A1 LTR MaLR -127 238 13 1978 113 60 3 chr6 179399825 179400107 -9879447 - AluSx SINE Alu -14 298 1 1945 87 11 56 chr6 179400268 179400554 -9879000 - AluSx SINE Alu 0 312 40 2465 75 0 31 chr6 179400574 179400894 -9878660 - AluY SINE Alu -1 310 1 354 260 78 8 chr6 179400935 179401083 -9878471 - L1MEc LINE L1 -4699 1564 1274 1341 284 59 84 chr6 179401134 179401523 -9878031 - L1MEc LINE L1 -4941 1178 781 1971 156 0 0 chr6 179401523 179401812 -9877742 - AluSx SINE Alu -23 289 1 1341 284 59 84 chr6 179401812 179402620 -9876934 - L1MEc LINE L1 -5338 781 11 292 308 0 0 chr6 179403320 179403398 -9876156 - L2 LINE L2 0 3272 3195 298 299 148 14 chr6 179403756 179403973 -9875581 - MIR SINE MIR 0 262 17 2713 43 0 0 chr6 179405678 179405983 -9873571 + AluY SINE Alu 1 305 -6 1954 114 4 21 chr6 179406164 179406444 -9873110 - AluSx SINE Alu -37 275 1 492 248 42 122 chr6 179406485 179406723 -9872831 + L1ME LINE L1 5534 5752 -369 2295 119 0 0 chr6 179407420 179407723 -9871831 + AluSx SINE Alu 1 303 -9 497 307 116 24 chr6 179407851 179408301 -9871253 + L2 LINE L2 2192 2682 -632 199 303 0 0 chr6 179408418 179408494 -9871060 + L2 LINE L2 2986 3061 -252 281 278 120 34 chr6 179408603 179408837 -9870717 + LTR16A LTR ERVL 103 356 -94 2033 142 0 13 chr6 179409066 179409369 -9870185 + AluSx SINE Alu 1 299 -13 239 333 26 8 chr6 179409479 179409596 -9869958 - L2 LINE L2 -222 3050 2932 4335 167 35 61 chr6 179410773 179411693 -9867861 - MER21A LTR ERV1 -19 912 17 2325 75 3 0 chr6 179411694 179412002 -9867552 + AluSg SINE Alu 1 309 0 270 0 0 0 chr6 179412002 179412015 -9867539 + (CA)n Simple_repeat Simple_repeat 1 43 0 270 0 0 0 chr6 179412015 179412045 -9867509 + (CA)n Simple_repeat Simple_repeat 2 31 0 21 82 0 0 chr6 179412197 179412246 -9867308 + AT_rich Low_complexity Low_complexity 1 49 0 2333 100 0 0 chr6 179413147 179413447 -9866107 + AluSq SINE Alu 1 300 -13 29 47 0 0 chr6 179413527 179413570 -9865984 + AT_rich Low_complexity Low_complexity 1 43 0 481 148 34 0 chr6 179413603 179414210 -9865344 + (TA)n Simple_repeat Simple_repeat 1 627 0 180 176 0 0 chr6 179414754 179414788 -9864766 + (CA)n Simple_repeat Simple_repeat 2 35 0 2528 78 0 0 chr6 179416856 179417165 -9862389 + AluSg SINE Alu 1 309 -1 295 319 43 0 chr6 179418096 179418212 -9861342 + MIR SINE MIR 142 262 0 336 83 0 0 chr6 179418431 179418479 -9861075 + (TG)n Simple_repeat Simple_repeat 1 48 0 2298 102 0 13 chr6 179419514 179419817 -9859737 + AluSx SINE Alu 1 299 -13 1986 110 22 4 chr6 179420157 179420462 -9859092 - AluSc SINE Alu 0 310 1 231 238 131 25 chr6 179420560 179420682 -9858872 - L1ME LINE L1 -220 5901 5767 2100 145 3 0 chr6 179420724 179421028 -9858526 + AluSx SINE Alu 1 305 -7 187 254 91 0 chr6 179421591 179421646 -9857908 + L2 LINE L2 3181 3240 -73 365 159 43 0 chr6 179422719 179422788 -9856766 - MER58 DNA MER1_type 0 2420 2349 828 238 98 81 chr6 179423408 179423667 -9855887 + HAL1b LINE L1 809 1062 -286 2282 98 14 0 chr6 179423667 179423954 -9855600 - AluSg SINE Alu -19 291 1 828 238 98 81 chr6 179423954 179424224 -9855330 + HAL1b LINE L1 1062 1347 -1 1399 138 159 41 chr6 179424772 179425092 -9854462 + L1MB8 LINE L1 5821 6178 0 1901 137 20 10 chr6 179425137 179425429 -9854125 - AluJb SINE Alu -17 295 1 259 212 71 35 chr6 179426886 179426999 -9852555 - MIR SINE MIR -60 202 86 14375 153 78 72 chr6 179427263 179428797 -9850757 - MER4A-int LTR ERV1 -358 6240 4716 1771 95 122 4 chr6 179428797 179429060 -9850494 + AluSg SINE Alu 2 295 -5 14375 153 78 72 chr6 179429060 179429078 -9850476 - MER4A-int LTR ERV1 -1882 4716 4700 2437 82 3 0 chr6 179429078 179429372 -9850182 + AluSp SINE Alu 1 295 -18 14375 153 78 72 chr6 179429372 179431030 -9848524 - MER4A-int LTR ERV1 -1898 4700 3053 1772 137 54 4 chr6 179431030 179431308 -9848246 - AluSx SINE Alu -20 292 1 14375 153 78 72 chr6 179431308 179431832 -9847722 - MER4A-int LTR ERV1 -3545 3053 2533 2280 69 38 3 chr6 179431832 179432121 -9847433 + AluSp SINE Alu 1 299 -14 14375 153 78 72 chr6 179432121 179432484 -9847070 - MER4A-int LTR ERV1 -4065 2533 2173 5216 49 0 2 chr6 179432484 179433076 -9846478 - LTR10C LTR ERV1 0 591 1 14375 153 78 72 chr6 179433076 179433859 -9845695 - MER4A-int LTR ERV1 -4425 2173 592 540 0 0 0 chr6 179433860 179433920 -9845634 + (CA)n Simple_repeat Simple_repeat 2 61 0 3884 150 143 81 chr6 179433920 179434964 -9844590 - MER4A-int LTR ERV1 -5490 1108 1 716 104 10 0 chr6 179434967 179435063 -9844491 - MER4A LTR ERV1 0 664 568 851 99 74 26 chr6 179435066 179435188 -9844366 + MER4-int LTR ERV1 503 618 -4397 294 73 0 0 chr6 179435188 179435229 -9844325 + (TG)n Simple_repeat Simple_repeat 2 42 0 851 99 74 26 chr6 179435229 179435284 -9844270 + MER4-int LTR ERV1 618 645 -4370 2078 121 0 0 chr6 179435284 179435564 -9843990 - AluSg SINE Alu -7 303 24 851 99 74 26 chr6 179435564 179435583 -9843971 + MER4-int LTR ERV1 645 662 -4353 * 5578 102 38 20 chr6 179435565 179436428 -9843126 + MER4-int LTR ERV1 771 1649 -3366 1349 110 141 9 chr6 179436429 179436656 -9842898 - LTR8 LTR ERV1 -434 257 1 978 37 0 15 chr6 179436656 179436790 -9842764 + MER4-int LTR ERV1 2737 2868 -3730 1959 148 7 0 chr6 179436790 179437087 -9842467 + AluSx SINE Alu 1 299 -13 1725 144 38 35 chr6 179437091 179437548 -9842006 + MER4-int LTR ERV1 3149 3680 -2918 * 4176 87 56 45 chr6 179437547 179437824 -9841730 + MER4-int LTR ERV1 3836 4109 -2489 2123 109 3 0 chr6 179437824 179438135 -9841419 - AluSp SINE Alu 0 312 1 4176 87 56 45 chr6 179438135 179438520 -9841034 + MER4-int LTR ERV1 4109 4506 -2092 1715 134 0 88 chr6 179438525 179438845 -9840709 + MER4A LTR ERV1 373 664 0 1219 139 19 28 chr6 179439250 179439465 -9840089 - MER20 DNA MER1_type 0 219 7 2199 102 14 0 chr6 179440244 179440575 -9838979 - AluSp SINE Alu 0 313 1 2432 77 0 10 chr6 179440586 179440898 -9838656 - AluY SINE Alu -2 309 1 5381 139 12 15 chr6 179441096 179441944 -9837610 - L1MA4A LINE L1 -5 6298 5454 740 120 83 0 chr6 179441944 179442052 -9837502 + AluJb SINE Alu 8 124 -188 1882 144 13 22 chr6 179442381 179442694 -9836860 - AluJb SINE Alu 0 312 3 2389 103 0 0 chr6 179442822 179443133 -9836421 + AluSx SINE Alu 2 312 0 219 69 0 0 chr6 179443605 179443634 -9835920 + (TG)n Simple_repeat Simple_repeat 2 30 0 183 152 91 0 chr6 179443743 179443776 -9835778 - L2 LINE L2 -14 3299 3264 * 246 299 92 63 chr6 179443749 179443867 -9835687 - MIR SINE MIR -14 248 122 2460 70 0 0 chr6 179443867 179444168 -9835386 - AluY SINE Alu -9 302 2 246 299 92 63 chr6 179444168 179444223 -9835331 - MIR SINE MIR -140 122 70 425 272 89 6 chr6 179446716 179446874 -9832680 + L1MC4 LINE L1 7742 7912 -130 235 211 13 26 chr6 179446982 179447058 -9832496 + (CATATA)n Simple_repeat Simple_repeat 5 79 0 5565 138 79 50 chr6 179447068 179447149 -9832405 - Tigger3b DNA MER2_type -1797 1231 1154 2261 80 7 7 chr6 179447149 179447438 -9832116 + AluSx SINE Alu 10 298 -14 5565 138 79 50 chr6 179447438 179447626 -9831928 - Tigger3b DNA MER2_type -1874 1154 973 2084 130 10 0 chr6 179447626 179447918 -9831636 + AluSq SINE Alu 1 295 -18 5565 138 79 50 chr6 179447918 179448801 -9830753 - Tigger3b DNA MER2_type -2055 973 45 237 204 20 0 chr6 179448801 179448850 -9830704 + (TA)n Simple_repeat Simple_repeat 2 51 0 352 292 103 21 chr6 179448897 179449130 -9830424 + LTR10A LTR ERV1 1 252 -357 284 217 29 0 chr6 179449202 179449271 -9830283 + LTR10A LTR ERV1 181 251 -358 1860 138 68 46 chr6 179449275 179449644 -9829910 + LTR10A LTR ERV1 172 548 -61 950 236 49 95 chr6 179449653 179450266 -9829288 + LTR10A-int LTR ERV1 1 585 -6064 259 239 76 33 chr6 179450309 179450401 -9829153 + LTR10A-int LTR ERV1 975 1070 -5579 * 5421 108 12 16 chr6 179450390 179451356 -9828198 + HERV17 LTR ERV1 719 1720 -5176 291 262 167 0 chr6 179451358 179451442 -9828112 - LTR8 LTR ERV1 -438 253 156 11903 166 6 15 chr6 179451442 179454610 -9824944 + Harlequin LTR ERV1 1808 6645 -4 1981 178 143 36 chr6 179454613 179455108 -9824446 + LTR10A LTR ERV1 1 548 -61 2024 115 10 14 chr6 179455118 179455414 -9824140 + AluSp SINE Alu 19 313 0 309 274 9 9 chr6 179455421 179455534 -9824020 + L1MC4 LINE L1 7930 8042 0 4164 112 43 14 chr6 179455843 179455934 -9823620 + LTR9B LTR ERV1 1 88 -556 2243 93 3 10 chr6 179455934 179456245 -9823309 - AluSq SINE Alu -4 309 1 4164 112 43 14 chr6 179456245 179456779 -9822775 + LTR9B LTR ERV1 88 644 0 2036 156 50 50 chr6 179457102 179457654 -9821900 + MLT2A2 LTR ERVL 1 554 0 2195 108 3 0 chr6 179457680 179457975 -9821579 - AluSc SINE Alu -13 296 1 1483 183 47 30 chr6 179458911 179459211 -9820343 - AluJo SINE Alu -7 305 1 272 27 27 0 chr6 179459221 179459258 -9820296 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 2259 71 4 0 chr6 179459260 179459541 -9820013 - AluSq SINE Alu -31 282 1 1215 191 148 0 chr6 179460056 179460359 -9819195 + MLT1B LTR MaLR 1 348 -42 269 286 26 13 chr6 179460845 179460922 -9818632 + MIR3 SINE MIR 131 208 0 404 280 50 77 chr6 179462033 179462119 -9817435 - MIR3 SINE MIR -6 202 115 4996 119 17 50 chr6 179462119 179462477 -9817077 - MER4E LTR ERV1 0 779 411 1916 129 39 7 chr6 179462477 179462763 -9816791 + AluSx SINE Alu 1 295 -17 4996 119 17 50 chr6 179462763 179463209 -9816345 - MER4E LTR ERV1 -368 411 1 404 280 50 77 chr6 179463209 179463304 -9816250 - MIR3 SINE MIR -93 115 26 2493 150 46 18 chr6 179463643 179463789 -9815765 - L1MB4 LINE L1 -10 6170 6030 1877 143 45 117 chr6 179463789 179463958 -9815596 + MLT1B LTR MaLR 1 181 -209 2127 88 36 0 chr6 179463958 179464263 -9815291 + AluSx SINE Alu 1 315 0 1877 143 45 117 chr6 179464263 179464511 -9815043 + MLT1B LTR MaLR 181 390 0 2493 150 46 18 chr6 179464511 179464817 -9814737 - L1MB4 LINE L1 -150 6030 5705 3187 172 19 76 chr6 179464964 179465685 -9813869 - LTR8 LTR ERV1 -11 680 1 12352 178 91 74 chr6 179465685 179465891 -9813663 - HUERS-P1 LTR ERV1 0 6263 6062 2354 92 3 0 chr6 179465891 179466185 -9813369 - AluSp SINE Alu -18 295 1 12352 178 91 74 chr6 179466185 179470077 -9809477 - HUERS-P1 LTR ERV1 -201 6062 1866 2381 91 0 0 chr6 179470077 179470384 -9809170 - AluSg SINE Alu -3 307 1 12352 178 91 74 chr6 179470384 179472280 -9807274 - HUERS-P1 LTR ERV1 -4397 1866 3 3143 178 32 74 chr6 179472282 179473002 -9806552 - LTR8 LTR ERV1 0 691 2 1769 144 13 20 chr6 179473878 179474177 -9805377 - AluJb SINE Alu -15 297 1 450 222 191 16 chr6 179474230 179474356 -9805198 + MER5A DNA MER1_type 42 189 0 21 0 0 0 chr6 179474567 179474588 -9804966 + AT_rich Low_complexity Low_complexity 1 21 0 845 172 0 0 chr6 179474590 179474718 -9804836 - FLAM_C SINE Alu -5 128 1 2235 119 0 6 chr6 179475021 179475332 -9804222 - AluSx SINE Alu -3 309 1 1892 123 69 0 chr6 179475564 179475840 -9803714 - AluSx SINE Alu -17 295 1 2256 91 7 0 chr6 179475998 179476285 -9803269 + AluSx SINE Alu 5 293 -19 2137 130 3 3 chr6 179476285 179476591 -9802963 + AluSx SINE Alu 1 307 -5 425 280 132 39 chr6 179476728 179476985 -9802569 + L2 LINE L2 1877 2157 -1157 410 181 9 209 chr6 179477023 179477238 -9802316 + MER53 DNA DNA 18 189 0 1215 282 140 33 chr6 179477247 179478241 -9801313 + L2 LINE L2 2191 3285 -28 234 0 0 0 chr6 179478250 179478276 -9801278 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 1864 141 0 48 chr6 179478678 179479013 -9800541 - AluSx SINE Alu 0 312 1 262 228 174 22 chr6 179479313 179479405 -9800149 + MIR SINE MIR 34 139 -123 1426 134 172 0 chr6 179479594 179479862 -9799692 - L1MA9 LINE L1 -1 6311 5998 1311 119 0 145 chr6 179479920 179480189 -9799365 + AluJo SINE Alu 1 230 -82 1298 246 64 46 chr6 179480592 179481045 -9798509 - L1ME3A LINE L1 0 6170 5658 1918 121 4 11 chr6 179481045 179481317 -9798237 - AluSx SINE Alu -42 270 1 1298 246 64 46 chr6 179481317 179481535 -9798019 - L1ME3A LINE L1 -512 5658 5446 1005 151 0 0 chr6 179481567 179481714 -9797840 + AluSg/x SINE Alu 135 307 0 214 39 0 0 chr6 179481714 179481740 -9797814 + (TAAA)n Simple_repeat Simple_repeat 3 136 0 395 322 40 7 chr6 179482012 179482164 -9797390 + MIR SINE MIR 4 160 -102 1922 157 0 13 chr6 179482620 179482926 -9796628 + AluJb SINE Alu 1 302 -10 1434 221 57 29 chr6 179483214 179483599 -9795955 + MSTD LTR MaLR 1 396 0 234 0 0 0 chr6 179483626 179483652 -9795902 + (GA)n Simple_repeat Simple_repeat 2 27 0 390 342 13 0 chr6 179484010 179484159 -9795395 - L2 LINE L2 -951 2363 2213 284 273 9 45 chr6 179484395 179484505 -9795049 - L2 LINE L2 -583 2731 2626 297 289 33 16 chr6 179484869 179484990 -9794564 + MIR3 SINE MIR 34 156 -52 540 204 232 0 chr6 179484996 179485138 -9794416 - MER5A DNA MER1_type -1 188 14 1402 156 5 0 chr6 179485258 179485469 -9794085 - AluJb SINE Alu -17 295 84 2734 23 7 0 chr6 179485543 179485848 -9793706 + AluY SINE Alu 1 307 -4 352 246 25 41 chr6 179487068 179487190 -9792364 - L1ME4a LINE L1 -11 6110 5991 1906 199 73 16 chr6 179487207 179487634 -9791920 - MLT1C LTR MaLR 0 467 17 731 311 78 18 chr6 179487716 179488211 -9791343 - L1ME4a LINE L1 -235 5886 5351 1926 141 14 7 chr6 179488673 179488963 -9790591 + AluSx SINE Alu 1 292 -20 300 27 0 0 chr6 179492029 179492066 -9787488 + (TG)n Simple_repeat Simple_repeat 2 38 0 2195 107 0 42 chr6 179493976 179494285 -9785269 - AluSx SINE Alu -16 296 1 226 243 143 0 chr6 179494961 179495031 -9784523 - L2 LINE L2 -1 3312 3233 867 116 7 34 chr6 179495129 179495275 -9784279 - FRAM SINE Alu -32 144 3 1185 42 14 0 chr6 179496268 179496411 -9783143 + L1PA8A LINE L1 5960 6104 -27 485 319 67 5 chr6 179496543 179496753 -9782801 - MIR SINE MIR -1 261 39 206 349 0 0 chr6 179496792 179496855 -9782699 + L2 LINE L2 3191 3253 -19 712 206 8 0 chr6 179496896 179497022 -9782532 - FLAM_A SINE Alu -6 127 1 2212 113 0 26 chr6 179497027 179497337 -9782217 - AluSq SINE Alu -8 305 4 699 210 128 26 chr6 179498523 179498718 -9780836 - MER20 DNA MER1_type -4 215 1 362 240 126 17 chr6 179500669 179500844 -9778710 - MIR SINE MIR -5 257 64 226 206 65 120 chr6 179501220 179501258 -9778296 - AluYb8 SINE Alu -111 197 158 1597 108 9 5 chr6 179501258 179501480 -9778074 - AluSg/x SINE Alu -5 307 85 226 206 65 120 chr6 179501480 179501533 -9778021 - AluYb8 SINE Alu -150 158 111 355 195 35 23 chr6 179502463 179502550 -9777004 + MER5B DNA MER1_type 6 93 -85 262 244 110 8 chr6 179502753 179502880 -9776674 - MIR SINE MIR -76 186 47 326 228 76 0 chr6 179503297 179503389 -9776165 - L2 LINE L2 -1 3271 3173 1378 158 0 9 chr6 179503860 179504082 -9775472 - AluJb SINE Alu -7 305 86 2201 108 26 13 chr6 179504089 179504394 -9775160 - AluSx SINE Alu -3 309 1 547 215 56 0 chr6 179505062 179505212 -9774342 + MER45A DNA AcHobo 10 178 0 1062 197 31 0 chr6 179505446 179505669 -9773885 + L1MA7 LINE L1 6060 6289 -2 2147 107 3 7 chr6 179505674 179505973 -9773581 + AluSx SINE Alu 1 298 -14 347 380 67 0 chr6 179506751 179506959 -9772595 + L3 LINE CR1 324 545 -1032 200 216 0 0 chr6 179507011 179507048 -9772506 + T-rich Low_complexity Low_complexity 1 37 0 1244 281 39 7 chr6 179507185 179507595 -9771959 - L1ME1 LINE L1 -6 6160 5738 2938 186 16 7 chr6 179508876 179509439 -9770115 - L1MB7 LINE L1 -11 6173 5606 181 239 43 0 chr6 179510461 179510507 -9769047 + MIR SINE MIR 98 145 -63 44 20 0 0 chr6 179511120 179511171 -9768383 + AT_rich Low_complexity Low_complexity 1 51 0 2463 66 0 7 chr6 179511218 179511520 -9768034 + AluY SINE Alu 1 300 -11 2191 112 3 0 chr6 179511540 179511836 -9767718 - AluSg SINE Alu -11 299 3 1676 170 50 0 chr6 179511948 179512230 -9767324 - AluJb SINE Alu -16 296 1 23 97 0 0 chr6 179512286 179512358 -9767196 + AT_rich Low_complexity Low_complexity 1 72 0 1058 78 0 21 chr6 179512696 179512838 -9766716 - MER85 DNA T2_type 0 139 1 236 274 92 21 chr6 179513278 179513422 -9766132 + MIR SINE MIR 33 186 -22 263 306 93 67 chr6 179513987 179514405 -9765149 + L1ME4a LINE L1 5494 5922 -199 8291 145 13 12 chr6 179514413 179516177 -9763377 - L1PA13 LINE L1 -2 6161 4401 2514 66 7 0 chr6 179516177 179516479 -9763075 - AluY SINE Alu -7 304 1 8291 145 13 12 chr6 179516479 179516764 -9762790 - L1PA13 LINE L1 -1762 4401 4134 2210 124 7 3 chr6 179516764 179517071 -9762483 - AluSx SINE Alu -4 308 1 8291 145 13 12 chr6 179517071 179517265 -9762289 - L1PA13 LINE L1 -2029 4134 3942 22 0 0 0 chr6 179517277 179517299 -9762255 + AT_rich Low_complexity Low_complexity 1 22 0 1987 83 8 4 chr6 179518106 179518360 -9761194 + AluSp SINE Alu 44 298 -15 230 310 44 0 chr6 179521150 179521263 -9758291 - MIR SINE MIR -76 186 69 24 0 0 0 chr6 179521678 179521702 -9757852 + AT_rich Low_complexity Low_complexity 1 24 0 2093 96 29 0 chr6 179521702 179521983 -9757571 - AluSx SINE Alu -23 289 1 279 252 58 39 chr6 179522569 179522672 -9756882 + MIR SINE MIR 108 212 -50 2344 106 0 0 chr6 179522739 179523042 -9756512 + AluSx SINE Alu 1 303 -9 2407 79 10 3 chr6 179523485 179523789 -9755765 - AluSq SINE Alu -7 306 1 414 0 0 0 chr6 179524504 179524550 -9755004 + (TG)n Simple_repeat Simple_repeat 2 47 0 478 297 120 14 chr6 179524613 179524963 -9754591 - L1ME4a LINE L1 -197 5924 5538 2680 103 11 3 chr6 179525752 179526121 -9753433 - THE1C LTR MaLR -3 372 1 325 337 86 5 chr6 179526445 179526632 -9752922 - MIR SINE MIR -33 229 28 263 152 15 76 chr6 179526921 179526987 -9752567 - MLT1J2 LTR MaLR -341 109 48 202 295 209 24 chr6 179527408 179527618 -9751936 - L3 LINE CR1 -1037 540 292 2088 110 30 23 chr6 179527849 179528150 -9751404 - AluSx SINE Alu -9 303 1 2739 115 36 7 chr6 179528840 179529256 -9750298 + MSTA LTR MaLR 1 428 0 260 193 50 118 chr6 179529413 179529532 -9750022 - L1M4 LINE L1 -1445 4701 4591 312 298 50 71 chr6 179529533 179529674 -9749880 - MIR SINE MIR -111 151 14 375 310 7 21 chr6 179530784 179530929 -9748625 + MIR SINE MIR 71 213 -49 2083 170 19 0 chr6 179530929 179531288 -9748266 - MER47A DNA MER2_type 0 366 1 500 84 12 0 chr6 179531616 179531699 -9747855 + (TG)n Simple_repeat Simple_repeat 1 84 0 216 241 0 89 chr6 179531791 179531870 -9747684 - L2 LINE L2 -6 3307 3236 374 243 81 43 chr6 179532149 179532334 -9747220 + MIR SINE MIR 61 252 -10 200 321 12 0 chr6 179533051 179533132 -9746422 + (TATATG)n Simple_repeat Simple_repeat 4 85 0 982 211 32 0 chr6 179533183 179533401 -9746153 - L1MD2 LINE L1 0 6359 6135 21 0 0 0 chr6 179536175 179536196 -9743358 + AT_rich Low_complexity Low_complexity 1 21 0 431 273 27 7 chr6 179538280 179538430 -9741124 - LTR65 LTR ERV1 -507 162 10 1922 141 65 41 chr6 179539269 179539637 -9739917 - LTR10A LTR ERV1 -61 548 172 467 226 145 68 chr6 179539667 179539902 -9739652 - LTR10A LTR ERV1 -356 253 1 397 278 43 9 chr6 179539987 179540102 -9739452 - L2 LINE L2 -4 3268 3150 2283 110 10 0 chr6 179540102 179540410 -9739144 - AluSx SINE Alu -1 311 1 301 200 58 7 chr6 179540844 179540969 -9738585 - MIR SINE MIR -6 256 41 316 292 191 6 chr6 179541188 179541356 -9738198 - MIR SINE MIR -11 251 53 1342 216 153 8 chr6 179542781 179543180 -9736374 + MLT1C LTR MaLR 11 467 0 255 241 78 64 chr6 179543449 179543590 -9735964 - Charlie8 DNA MER1_type -2126 291 149 2425 76 7 3 chr6 179543689 179543991 -9735563 + AluSx SINE Alu 1 303 -9 800 48 9 0 chr6 179544794 179544899 -9734655 + (CCTG)n Simple_repeat Simple_repeat 2 107 0 423 0 0 0 chr6 179544900 179544947 -9734607 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 373 279 10 19 chr6 179545277 179545381 -9734173 + Charlie7 DNA MER1_type 3 105 -2507 37 39 0 0 chr6 179545434 179545485 -9734069 + AT_rich Low_complexity Low_complexity 1 51 0 532 248 8 0 chr6 179546410 179546527 -9733027 - MER63 DNA MER1_type -278 784 41 191 121 0 190 chr6 179547433 179547491 -9732063 - L2 LINE L2 -5 3308 3262 2404 92 23 26 chr6 179547840 179548189 -9731365 + THE1A LTR MaLR 1 348 -7 1138 149 45 10 chr6 179549873 179549971 -9729583 + MER7A DNA MER2_type 2 95 -2943 2224 94 0 11 chr6 179549971 179550288 -9729266 - AluSx SINE Alu 0 314 1 1138 149 45 10 chr6 179550288 179550389 -9729165 + MER7A DNA MER2_type 95 207 -139 1871 129 12 14 chr6 179550398 179550738 -9728816 - MER4A LTR ERV1 -6 658 261 545 129 54 0 chr6 179550738 179550831 -9728723 - MER4A LTR ERV1 -566 98 1 7125 95 51 14 chr6 179550860 179551930 -9727624 - MER4A-int LTR ERV1 -14 6584 5475 * 7564 100 73 14 chr6 179551929 179553645 -9725909 - MER4A-int LTR ERV1 -1457 5141 2736 1138 150 159 9 chr6 179553648 179553868 -9725686 + LTR8 LTR ERV1 5 257 -434 6361 82 42 14 chr6 179553868 179554824 -9724730 - MER4A-int LTR ERV1 -4103 2495 1513 240 35 0 0 chr6 179554824 179554853 -9724701 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 262 358 83 0 chr6 179554983 179555103 -9724451 - L2 LINE L2 0 3272 3143 24 0 0 0 chr6 179556011 179556035 -9723519 + AT_rich Low_complexity Low_complexity 1 24 0 197 254 18 0 chr6 179557218 179557273 -9722281 + L2 LINE L2 3258 3313 0 3378 219 285 11 chr6 179557775 179558916 -9720638 - L1MDa LINE L1 -5071 1469 17 246 62 0 0 chr6 179559002 179559034 -9720520 + (TTA)n Simple_repeat Simple_repeat 2 33 0 267 83 0 0 chr6 179561037 179561073 -9718481 + Alu SINE Alu 2 37 -265 2325 97 0 28 chr6 179561074 179561394 -9718160 + AluSq SINE Alu 1 311 -2 438 287 37 61 chr6 179561441 179561605 -9717949 - L2 LINE L2 -2 3270 3111 1152 249 101 65 chr6 179561609 179562183 -9717371 - MLT1G1 LTR MaLR 0 595 1 1136 239 216 44 chr6 179562185 179562666 -9716888 + MLT1F1 LTR MaLR 3 566 -1 273 248 256 0 chr6 179563066 179563191 -9716363 + MER5A DNA MER1_type 33 189 0 1979 128 186 8 chr6 179564855 179565215 -9714339 - MSTA LTR MaLR -4 424 1 430 192 71 0 chr6 179565326 179565425 -9714129 - MLT2C1 LTR ERVL -291 106 1 383 207 23 0 chr6 179566098 179566185 -9713369 - MIR SINE MIR -126 136 48 1017 171 37 42 chr6 179566270 179566486 -9713068 - MER20 DNA MER1_type -3 216 2 391 255 43 21 chr6 179567727 179567868 -9711686 + L2 LINE L2 3164 3307 -6 2160 110 0 32 chr6 179567939 179568247 -9711307 - AluSx SINE Alu -14 298 1 242 193 18 0 chr6 179570033 179570090 -9709464 + (CA)n Simple_repeat Simple_repeat 2 59 0 837 194 0 0 chr6 179570103 179570283 -9709271 + (CA)n Simple_repeat Simple_repeat 1 180 0 309 26 0 0 chr6 179570304 179570342 -9709212 + (CA)n Simple_repeat Simple_repeat 2 39 0 1339 193 78 3 chr6 179570454 179570749 -9708805 - MER33 DNA MER1_type -7 317 1 332 366 50 25 chr6 179571112 179571393 -9708161 + L1MEd LINE L1 408 695 -5510 1124 285 87 36 chr6 179571414 179572193 -9707361 + L1MEd LINE L1 1002 1820 -4576 2368 107 0 0 chr6 179572321 179572629 -9706925 + AluSx SINE Alu 1 308 -4 183 313 15 0 chr6 179573611 179573678 -9705876 + MIR SINE MIR 191 258 -4 793 164 64 46 chr6 179574354 179574657 -9704897 - L1MC2 LINE L1 -1 6343 5976 627 194 59 35 chr6 179574744 179574914 -9704640 - MER104 DNA MER2_type -3 177 4 247 307 74 18 chr6 179575178 179575341 -9704213 + MIR SINE MIR 85 256 -6 731 164 25 114 chr6 179576080 179576281 -9703273 + MER53 DNA DNA 1 183 -6 1896 114 11 25 chr6 179576928 179577208 -9702346 + AluSx SINE Alu 1 276 -36 441 0 0 0 chr6 179577218 179577267 -9702287 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 355 289 113 0 chr6 179577637 179577779 -9701775 - MIR SINE MIR -78 184 27 220 344 42 0 chr6 179577862 179577958 -9701596 - L2 LINE L2 -247 3025 2926 1110 167 0 0 chr6 179579314 179579488 -9700066 + AluJb SINE Alu 134 307 -5 377 272 51 97 chr6 179579491 179579943 -9699611 - L1MC5 LINE L1 -261 7700 7270 262 314 0 0 chr6 179579935 179580005 -9699549 - L1MC4a LINE L1 -1096 6712 6643 * 772 260 64 21 chr6 179580323 179580650 -9698904 + L2 LINE L2 2364 2704 -610 251 230 247 6 chr6 179580739 179580913 -9698641 + L2 LINE L2 2715 2930 -384 894 109 0 0 chr6 179581018 179581155 -9698399 + (TCCCC)n Simple_repeat Simple_repeat 2 138 0 1990 128 0 0 chr6 179581158 179581432 -9698122 - AluSx SINE Alu -36 276 3 214 208 83 77 chr6 179582218 179582386 -9697168 + (GGGTG)n Simple_repeat Simple_repeat 3 171 0 * 293 232 0 70 chr6 179582332 179582517 -9697037 + (TTAGGG)n Simple_repeat Simple_repeat 1 172 0 * 322 187 121 36 chr6 179582399 179582621 -9696933 + (GGATG)n Simple_repeat Simple_repeat 1 240 0 561 220 84 56 chr6 179582713 179582927 -9696627 - MER106A DNA MER1_type -2 234 15 559 100 22 22 chr6 179583109 179583199 -9696355 + AluJ/FRAM SINE Alu 216 305 -7 25 0 0 0 chr6 179583672 179583697 -9695857 + AT_rich Low_complexity Low_complexity 1 25 0 2248 121 32 16 chr6 179584825 179585204 -9694350 - Tigger2a DNA MER2_type -49 385 1 254 287 93 9 chr6 179585239 179585347 -9694207 - MIR SINE MIR -33 229 113 39935 62 8 3 chr6 179586016 179592127 -9687427 + L1PA5 LINE L1 12 6153 -1 1791 136 59 82 chr6 179592796 179592846 -9686708 + MSTD LTR MaLR 1 51 -345 2339 94 0 35 chr6 179592846 179593164 -9686390 - AluY SINE Alu -4 307 1 1791 136 59 82 chr6 179593164 179593518 -9686036 + MSTD LTR MaLR 51 396 0 342 67 0 0 chr6 179594253 179594298 -9685256 + (TG)n Simple_repeat Simple_repeat 1 45 0 2200 229 129 5 chr6 179594431 179595013 -9684541 - MLT2F LTR ERVL -4 659 6 886 194 0 24 chr6 179595137 179595307 -9684247 + FRAM SINE Alu 1 166 0 296 303 86 72 chr6 179595397 179595687 -9683867 + L2 LINE L2 2569 2862 -452 486 316 102 5 chr6 179595758 179595964 -9683590 - MIR SINE MIR -12 250 25 200 352 63 7 chr6 179596019 179596161 -9683393 + L2 LINE L2 3160 3309 -4 * 237 248 33 91 chr6 179596145 179596266 -9683288 - L2 LINE L2 -18 3254 3141 275 326 167 0 chr6 179596861 179597005 -9682549 - MIR SINE MIR -14 248 81 1937 146 17 7 chr6 179597248 179597535 -9682019 + AluJb SINE Alu 1 290 -22 262 308 111 12 chr6 179598745 179598917 -9680637 - MIR SINE MIR -53 209 21 252 293 12 0 chr6 179600093 179600175 -9679379 - MIR SINE MIR -108 154 72 280 296 101 56 chr6 179601466 179601645 -9677909 + L3b LINE CR1 1275 1461 -122 463 191 64 28 chr6 179602085 179602226 -9677328 - MLT1F1 LTR MaLR 0 567 422 295 309 36 53 chr6 179602273 179602568 -9676986 - MLT1F1 LTR MaLR -278 289 1 704 193 0 21 chr6 179602664 179602809 -9676745 + FLAM_C SINE Alu 2 143 0 2071 89 0 79 chr6 179604535 179604839 -9674715 + AluSx SINE Alu 26 305 -7 2078 80 59 25 chr6 179604839 179605124 -9674430 + AluSq SINE Alu 1 296 -17 196 271 73 52 chr6 179605357 179605453 -9674101 + L2 LINE L2 3137 3234 -38 216 273 0 0 chr6 179606358 179606413 -9673141 + L2 LINE L2 2491 2545 -769 443 320 73 10 chr6 179606731 179606980 -9672574 - MIR SINE MIR 0 262 1 2104 118 0 0 chr6 179607177 179607456 -9672098 + AluSq SINE Alu 19 297 -16 3561 100 10 4 chr6 179607625 179608133 -9671421 - MER9 LTR ERVK 0 511 1 676 274 41 5 chr6 179608345 179608542 -9671012 - MER58A DNA MER1_type -19 205 2 21 0 0 0 chr6 179608953 179608974 -9670580 + AT_rich Low_complexity Low_complexity 1 21 0 887 111 22 0 chr6 179609897 179610032 -9669522 - MER75 DNA T2_type -188 326 189 461 265 69 38 chr6 179613001 179613198 -9666356 + MIR SINE MIR 40 253 -9 346 238 12 0 chr6 179613527 179613611 -9665943 - MIR SINE MIR -123 139 55 186 323 0 0 chr6 179614345 179614410 -9665144 - MIR SINE MIR -9 253 189 2307 120 13 0 chr6 179614930 179615238 -9664316 + AluSx SINE Alu 1 312 0 253 223 207 8 chr6 179615291 179615412 -9664142 - L1ME4a LINE L1 -4 6117 5973 290 317 0 67 chr6 179619472 179619592 -9659962 - MER5A DNA MER1_type -56 133 22 2395 76 0 10 chr6 179619771 179620075 -9659479 - AluY SINE Alu -10 301 1 440 295 66 18 chr6 179620337 179620503 -9659051 - MIR3 SINE MIR -9 199 26 1775 169 0 39 chr6 179621387 179621694 -9657860 + AluJo SINE Alu 1 295 -17 238 205 0 72 chr6 179622049 179622132 -9657422 + CT-rich Low_complexity Low_complexity 3 79 0 2130 115 31 0 chr6 179622618 179622906 -9656648 + AluSx SINE Alu 1 297 -15 264 179 21 74 chr6 179623092 179623187 -9656367 + L1MB7 LINE L1 6095 6184 0 21 0 0 0 chr6 179626514 179626535 -9653019 + AT_rich Low_complexity Low_complexity 1 21 0 191 292 153 0 chr6 179627643 179627715 -9651839 + L2 LINE L2 3209 3291 -22 345 272 61 41 chr6 179630133 179630280 -9649274 + MIR SINE MIR 65 214 -48 192 341 250 4 chr6 179634321 179634585 -9644969 + L3 LINE CR1 186 514 -1063 279 172 52 35 chr6 179635140 179635198 -9644356 + L2 LINE L2 3136 3194 -78 836 261 28 0 chr6 179636549 179636764 -9642790 + MER58A DNA MER1_type 1 221 -3 749 243 167 9 chr6 179636968 179637297 -9642257 + L1M4 LINE L1 3065 3445 -2701 14333 148 63 29 chr6 179637307 179639675 -9639879 + L1P5 LINE L1 1 2285 -4582 958 86 0 0 chr6 179639675 179639792 -9639762 + AluSp/q SINE Alu 176 292 -21 14333 148 63 29 chr6 179639792 179643180 -9636374 + L1P5 LINE L1 2285 6507 -360 246 213 0 53 chr6 179643204 179643298 -9636256 - L1MC4 LINE L1 -1340 6702 6614 2893 72 6 3 chr6 179643389 179643750 -9635804 + L1PB1 LINE L1 5789 6150 -1 6249 188 71 76 chr6 179643776 179643911 -9635643 + L1M4 LINE L1 3442 3576 -2608 252 0 0 0 chr6 179643911 179643939 -9635615 + (CA)n Simple_repeat Simple_repeat 2 29 0 6249 188 71 76 chr6 179643939 179644781 -9634773 + L1M4 LINE L1 3576 4420 -1764 231 36 0 0 chr6 179644781 179644809 -9634745 + (CA)n Simple_repeat Simple_repeat 1 28 0 6249 188 71 76 chr6 179644809 179646005 -9633549 + L1M4 LINE L1 4420 5588 -596 3217 189 91 7 chr6 179646004 179646718 -9632836 + L1MB7 LINE L1 5411 6184 0 * 237 328 66 33 chr6 179648411 179648682 -9630872 + L2 LINE L2 2221 2500 -814 757 195 86 11 chr6 179649749 179649923 -9629631 - MER58A DNA MER1_type 0 224 38 304 324 57 84 chr6 179650422 179650706 -9628848 - L1MC4 LINE L1 -2073 5735 5462 2101 84 7 4 chr6 179650706 179650981 -9628573 + AluSg SINE Alu 30 305 -5 304 324 57 84 chr6 179650981 179651067 -9628487 - L1MC4 LINE L1 -2346 5462 5375 3106 188 65 11 chr6 179651073 179651717 -9627837 - L1MC2 LINE L1 -11 6333 5655 666 195 0 0 chr6 179656036 179656154 -9623400 + L1MA7 LINE L1 6172 6289 -2 300 111 0 0 chr6 179657688 179657733 -9621821 + (TG)n Simple_repeat Simple_repeat 2 46 0 2020 144 3 3 chr6 179658635 179658947 -9620607 + AluJb SINE Alu 1 312 0 243 305 102 68 chr6 179659061 179659238 -9620316 + L2 LINE L2 2904 3086 -186 831 294 17 0 chr6 179659246 179659481 -9620073 + MIR SINE MIR 21 259 -3 366 200 191 0 chr6 179659591 179659706 -9619848 + MER112 DNA MER1_type 115 251 -9 2201 113 3 0 chr6 179660045 179660336 -9619218 - AluSc SINE Alu -14 295 4 2313 103 3 0 chr6 179660337 179660638 -9618916 - AluSp SINE Alu -11 302 1 329 205 39 13 chr6 179660642 179660720 -9618834 + MER103 DNA DNA 80 159 -7 198 0 0 0 chr6 179661946 179661968 -9617586 + (T)n Simple_repeat Simple_repeat 1 22 0 330 170 189 75 chr6 179662956 179663062 -9616492 + MER20 DNA MER1_type 1 118 -101 285 214 45 56 chr6 179664196 179664285 -9615269 + MER63 DNA MER1_type 975 1062 0 339 25 0 0 chr6 179666428 179666468 -9613086 + (CAG)n Simple_repeat Simple_repeat 3 42 0 23 0 0 0 chr6 179666604 179666627 -9612927 + AT_rich Low_complexity Low_complexity 1 23 0 1944 107 24 21 chr6 179666687 179666977 -9612577 - AluJo SINE Alu -17 295 5 21 71 0 0 chr6 179667827 179667869 -9611685 + AT_rich Low_complexity Low_complexity 1 42 0 34 55 0 0 chr6 179668239 179668294 -9611260 + AT_rich Low_complexity Low_complexity 1 55 0 259 228 59 40 chr6 179669693 179669794 -9609760 + L1ME4a LINE L1 5992 6094 -27 24 0 0 0 chr6 179671975 179671999 -9607555 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 179672445 179672466 -9607088 + AT_rich Low_complexity Low_complexity 1 21 0 793 187 40 67 chr6 179673817 179674042 -9605512 + MER20 DNA MER1_type 1 219 0 356 149 46 23 chr6 179674050 179674137 -9605417 + MER20 DNA MER1_type 131 219 0 353 161 46 23 chr6 179674145 179674232 -9605322 + MER20 DNA MER1_type 131 219 0 374 138 46 23 chr6 179674240 179674327 -9605227 + MER20 DNA MER1_type 131 219 0 356 149 46 23 chr6 179674335 179674422 -9605132 + MER20 DNA MER1_type 131 219 0 265 250 0 125 chr6 179675009 179675105 -9604449 + MIR SINE MIR 32 115 -93 389 338 77 60 chr6 179675738 179675749 -9603805 - L2 LINE L2 -426 2888 2879 282 95 0 0 chr6 179675749 179675791 -9603763 + (TG)n Simple_repeat Simple_repeat 2 43 0 389 338 77 60 chr6 179675791 179676131 -9603423 - L2 LINE L2 -435 2879 2531 315 175 18 0 chr6 179678003 179678060 -9601494 + MER58 DNA MER1_type 2355 2412 -8 773 244 56 15 chr6 179678757 179678954 -9600600 + MER63A DNA MER1_type 6 210 0 2283 95 0 7 chr6 179679626 179679921 -9599633 - AluSg1 SINE Alu -16 293 1 1402 265 143 16 chr6 179681376 179682141 -9597413 - L2 LINE L2 0 3313 2452 699 241 91 0 chr6 179683359 179683558 -9595996 - MER20 DNA MER1_type 0 219 3 656 283 91 75 chr6 179684293 179684923 -9594631 - HAL1b LINE L1 -500 848 209 2365 89 7 0 chr6 179685149 179685453 -9594101 - AluSp SINE Alu -7 306 1 2238 122 0 0 chr6 179685514 179685817 -9593737 - AluSx SINE Alu -9 303 1 219 322 166 45 chr6 179685872 179686816 -9592738 + L2 LINE L2 518 1576 -1738 226 178 0 0 chr6 179687365 179687410 -9592144 - L1MC4 LINE L1 -71 7971 7927 267 26 0 0 chr6 179687427 179687465 -9592089 - L1PA10 LINE L1 0 6168 6131 231 227 0 0 chr6 179687921 179687965 -9591589 + L2 LINE L2 3265 3308 -5 227 269 26 26 chr6 179688754 179688832 -9590722 + MLT1L LTR MaLR 2 79 -536 1918 157 3 10 chr6 179689292 179689591 -9589963 + AluJb SINE Alu 1 297 -15 378 119 0 0 chr6 179690976 179691035 -9588519 + U3 snRNA snRNA 5 63 -154 189 74 0 0 chr6 179691080 179691107 -9588447 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 284 279 48 10 chr6 179692202 179692306 -9587248 + L1ME4a LINE L1 5754 5861 -260 393 227 17 58 chr6 179692340 179692512 -9587042 + L1ME4a LINE L1 5951 6115 -6 22 35 0 0 chr6 179694265 179694294 -9585260 + AT_rich Low_complexity Low_complexity 1 29 0 398 311 48 105 chr6 179696309 179696682 -9582872 + L2 LINE L2 2921 3272 0 600 140 0 10 chr6 179697271 179697371 -9582183 + MER4A LTR ERV1 1 99 -565 1820 121 7 30 chr6 179697399 179697696 -9581858 + MER4A LTR ERV1 375 664 0 916 126 226 45 chr6 179698668 179698783 -9580771 + MER46A DNA MER2_type 2 95 -2636 2478 76 0 0 chr6 179698783 179699087 -9580467 - AluY SINE Alu -7 304 1 916 126 226 45 chr6 179699087 179699170 -9580384 + MER46A DNA MER2_type 95 236 0 2053 198 16 7 chr6 179699465 179699900 -9579654 - MER54A LTR ERVL -2 899 461 281 253 0 13 chr6 179700552 179700631 -9578923 - MER116 DNA Mariner 0 80 3 414 293 53 23 chr6 179701956 179702219 -9577335 + HAL1b LINE L1 344 614 -734 1877 136 54 56 chr6 179702886 179703313 -9576241 + L1MB7 LINE L1 5759 6184 0 1434 216 81 115 chr6 179703687 179703824 -9575730 + L1MC5 LINE L1 6637 6777 -1184 2194 113 3 3 chr6 179703824 179704135 -9575419 + AluSx SINE Alu 1 311 -1 1434 216 81 115 chr6 179704135 179704966 -9574588 + L1MC5 LINE L1 6777 7572 -389 22 0 0 0 chr6 179704987 179705009 -9574545 + AT_rich Low_complexity Low_complexity 1 22 0 685 281 100 27 chr6 179705157 179705306 -9574248 + L1ME3A LINE L1 5263 5400 -721 2052 136 0 7 chr6 179705306 179705601 -9573953 + AluSx SINE Alu 1 293 -19 685 281 100 27 chr6 179705601 179705975 -9573579 + L1ME3A LINE L1 5400 5817 -304 451 218 105 23 chr6 179706415 179706548 -9573006 - Charlie8 DNA MER1_type -2229 188 45 407 182 27 55 chr6 179706573 179706683 -9572871 + MIR SINE MIR 17 123 -139 342 344 32 19 chr6 179707116 179707273 -9572281 - MER5B DNA MER1_type -16 162 4 307 208 200 42 chr6 179707294 179707414 -9572140 + MIR SINE MIR 39 177 -85 3533 206 51 33 chr6 179707829 179708806 -9570748 + L1MC3 LINE L1 6096 7090 -695 390 239 0 11 chr6 179708812 179708904 -9570650 + MLT1F1 LTR MaLR 35 125 -442 1219 154 88 9 chr6 179708904 179709359 -9570195 + L1MD3 LINE L1 7404 7995 0 21 36 0 0 chr6 179710239 179710267 -9569287 + AT_rich Low_complexity Low_complexity 1 28 0 2166 110 0 0 chr6 179710289 179710581 -9568973 + AluSq SINE Alu 1 292 -21 2155 130 0 7 chr6 179710850 179711158 -9568396 + AluSx SINE Alu 1 306 -6 1820 160 138 0 chr6 179711357 179711726 -9567828 + MSTA LTR MaLR 1 420 -8 308 314 47 64 chr6 179711748 179711920 -9567634 - MIR SINE MIR -74 188 20 225 159 0 0 chr6 179711973 179712017 -9567537 + (CA)n Simple_repeat Simple_repeat 2 45 0 594 186 0 0 chr6 179712781 179712878 -9566676 + FLAM_A SINE Alu 24 120 -22 1255 119 5 24 chr6 179712902 179713112 -9566442 - MER2 DNA MER2_type -135 210 5 1672 181 43 3 chr6 179713528 179713853 -9565701 - MER2 DNA MER2_type 0 345 8 229 326 140 37 chr6 179714256 179714584 -9564970 - L3 LINE CR1 -418 1159 798 21 71 0 0 chr6 179716283 179716325 -9563229 + AT_rich Low_complexity Low_complexity 1 42 0 256 264 20 122 chr6 179716460 179716608 -9562946 + MIR3 SINE MIR 14 146 -62 203 320 245 16 chr6 179716948 179717201 -9562353 + L2 LINE L2 1968 2278 -1036 299 250 0 0 chr6 179717207 179717283 -9562271 + HsTC2 DNA Tc2 4 79 -1819 1421 161 14 9 chr6 179717362 179717585 -9561969 - AluJo SINE Alu -88 224 1 263 127 0 18 chr6 179717598 179717653 -9561901 + (TA)n Simple_repeat Simple_repeat 2 55 0 43 56 0 0 chr6 179717779 179717850 -9561704 + AT_rich Low_complexity Low_complexity 1 71 0 34 0 0 0 chr6 179718205 179718239 -9561315 + AT_rich Low_complexity Low_complexity 1 34 0 516 355 29 16 chr6 179718595 179718840 -9560714 - L2 LINE L2 -931 2383 2136 2096 168 101 3 chr6 179719718 179720106 -9559448 + MSTB LTR MaLR 1 426 0 243 194 16 32 chr6 179720944 179721006 -9558548 - MIR3 SINE MIR -6 202 142 186 250 0 0 chr6 179721722 179721778 -9557776 + (CA)n Simple_repeat Simple_repeat 2 57 0 306 0 0 0 chr6 179721801 179721835 -9557719 + (TG)n Simple_repeat Simple_repeat 1 34 0 586 213 6 34 chr6 179722512 179722687 -9556867 + MLT1E1 LTR MaLR 50 268 -386 844 156 0 0 chr6 179722694 179722829 -9556725 + FLAM_A SINE Alu 8 142 0 325 243 27 20 chr6 179723732 179723882 -9555672 - MLT1E1 LTR MaLR -412 242 42 398 301 43 14 chr6 179724606 179724815 -9554739 + L1ME LINE L1 5501 5715 -406 189 0 0 0 chr6 179725443 179725464 -9554090 + (T)n Simple_repeat Simple_repeat 1 21 0 636 239 85 127 chr6 179725587 179726155 -9553399 + MLT1G LTR MaLR 44 588 -2 222 263 53 32 chr6 179726401 179726496 -9553058 + L2 LINE L2 2995 3091 -181 236 217 17 35 chr6 179726629 179726744 -9552810 + GA-rich Low_complexity Low_complexity 3 115 0 2226 108 3 0 chr6 179727028 179727325 -9552229 + AluSq SINE Alu 3 300 -13 259 288 274 7 chr6 179727369 179727515 -9552039 - MIR SINE MIR -76 186 2 359 270 25 63 chr6 179727736 179727775 -9551779 + MIR SINE MIR 106 145 -117 939 186 166 0 chr6 179727775 179727974 -9551580 - MER46A DNA MER2_type 0 236 5 359 270 25 63 chr6 179727974 179728093 -9551461 + MIR SINE MIR 145 258 -4 295 228 123 9 chr6 179728271 179728385 -9551169 + L1ME4a LINE L1 5992 6118 -3 398 271 10 21 chr6 179728447 179728543 -9551011 + MIR3 SINE MIR 111 205 -3 270 281 41 37 chr6 179728735 179728884 -9550670 + MIR SINE MIR 20 167 -56 21 36 0 0 chr6 179730538 179730566 -9548988 + AT_rich Low_complexity Low_complexity 1 28 0 406 156 44 0 chr6 179731069 179731159 -9548395 + L1MB4 LINE L1 6087 6180 0 23 78 0 0 chr6 179731487 179731538 -9548016 + AT_rich Low_complexity Low_complexity 1 51 0 472 263 128 40 chr6 179732148 179732383 -9547171 + MIR SINE MIR 15 262 0 738 258 105 26 chr6 179733899 179734029 -9545525 + L1MEc LINE L1 703 821 -5575 1487 155 111 30 chr6 179734029 179734327 -9545227 + AluJo SINE Alu 1 312 0 738 258 105 26 chr6 179734327 179734797 -9544757 + L1MEc LINE L1 821 1472 -4924 207 0 0 0 chr6 179734879 179734902 -9544652 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 182 161 0 0 chr6 179735412 179735443 -9544111 + MIR3 SINE MIR 132 162 -46 326 319 126 0 chr6 179736111 179736230 -9543324 + L2 LINE L2 3138 3271 -1 22 0 0 0 chr6 179736307 179736329 -9543225 + AT_rich Low_complexity Low_complexity 1 22 0 353 232 141 65 chr6 179736620 179736871 -9542683 + MLT1H LTR MaLR 117 389 -206 260 240 27 0 chr6 179736936 179737011 -9542543 + MLT1H LTR MaLR 473 549 0 216 0 0 0 chr6 179737985 179738009 -9541545 + (A)n Simple_repeat Simple_repeat 1 24 0 2342 71 0 17 chr6 179738308 179738604 -9540950 + AluY SINE Alu 1 291 -20 3222 183 75 78 chr6 179739412 179740472 -9539082 + L1MC3 LINE L1 6706 7761 -24 1672 186 3 16 chr6 179740474 179740781 -9538773 + AluJo SINE Alu 1 303 -9 266 356 30 15 chr6 179741015 179741147 -9538407 - MER5A DNA MER1_type 0 189 56 212 358 45 30 chr6 179741039 179741173 -9538381 + MER5A DNA MER1_type 35 170 -19 * 468 257 74 15 chr6 179741425 179741627 -9537927 - MER113 DNA MER1_type? -307 214 1 259 325 143 8 chr6 179742233 179742359 -9537195 + MIR3 SINE MIR 20 162 -46 203 162 0 0 chr6 179742781 179742818 -9536736 + T-rich Low_complexity Low_complexity 4 40 0 330 280 41 66 chr6 179743149 179743392 -9536162 - L2 LINE L2 -187 3085 2849 2350 103 0 3 chr6 179744055 179744365 -9535189 - AluSc SINE Alu 0 309 1 294 75 0 0 chr6 179744409 179744481 -9535073 + Alu SINE Alu 241 312 0 22 0 0 0 chr6 179744890 179744912 -9534642 + AT_rich Low_complexity Low_complexity 1 22 0 2023 107 17 20 chr6 179745030 179745328 -9534226 + AluSx SINE Alu 1 297 -15 1575 304 66 34 chr6 179745520 179746745 -9532809 - L1MEc LINE L1 -5001 1395 131 261 284 30 0 chr6 179747850 179747917 -9531637 - L2 LINE L2 -3 3310 3242 2091 215 104 5 chr6 179747937 179748719 -9530835 + L1MB8 LINE L1 4677 5519 -665 487 172 10 10 chr6 179748721 179748820 -9530734 + L1MB8 LINE L1 5685 5783 -391 1883 150 27 51 chr6 179748827 179749241 -9530313 + MSTB1 LTR MaLR 1 404 -28 2096 98 54 9 chr6 179749270 179749587 -9529967 - L1PA11 LINE L1 -10 6164 5834 1492 182 36 30 chr6 179749641 179750004 -9529550 + L1MB8 LINE L1 5812 6176 -2 2185 165 42 28 chr6 179750729 179751201 -9528353 + MER66B LTR ERV1 8 486 0 302 288 220 0 chr6 179751425 179751557 -9527997 + L1ME3A LINE L1 5311 5471 -650 296 257 140 34 chr6 179751618 179751797 -9527757 + L1ME3A LINE L1 5545 5742 -379 224 273 34 80 chr6 179752780 179752868 -9526686 + L2 LINE L2 3171 3254 -18 237 302 86 35 chr6 179754479 179754595 -9524959 - L2 LINE L2 -4 3268 3147 1558 90 18 0 chr6 179754706 179754929 -9524625 - L1PA10 LINE L1 0 6168 5942 1954 148 59 23 chr6 179755069 179755460 -9524094 + L1MB2 LINE L1 5723 6127 -44 2265 86 0 3 chr6 179755461 179755753 -9523801 + AluSc SINE Alu 4 294 -15 230 246 15 0 chr6 179755863 179755953 -9523601 + L1ME3A LINE L1 5807 5897 -267 246 267 103 55 chr6 179755959 179756105 -9523449 + L1ME3A LINE L1 5962 6114 -56 209 318 34 11 chr6 179756187 179756275 -9523279 + L2 LINE L2 2795 2884 -430 346 304 62 31 chr6 179756343 179756504 -9523050 + L1ME LINE L1 5610 5775 -346 400 234 38 71 chr6 179756778 179756962 -9522592 + MER104 DNA MER2_type 1 178 -2 423 202 61 0 chr6 179757232 179757331 -9522223 + MER92C LTR ERV1 12 116 -438 270 229 0 14 chr6 179757431 179757501 -9522053 + MER92C LTR ERV1 484 552 -2 539 195 8 118 chr6 179757919 179758127 -9521427 + MER31-int LTR ERV1 1067 1246 -3690 1846 160 45 9 chr6 179758127 179758459 -9521095 + MER2 DNA MER2_type 1 344 0 539 195 8 118 chr6 179758459 179758496 -9521058 + MER31-int LTR ERV1 1246 1285 -3651 397 142 50 99 chr6 179758578 179758656 -9520898 + MER31-int LTR ERV1 1310 1379 -3557 2236 117 0 0 chr6 179758656 179758956 -9520598 + AluSg SINE Alu 1 300 -10 397 142 50 99 chr6 179758956 179759018 -9520536 + MER31-int LTR ERV1 1379 1443 -3493 256 221 91 78 chr6 179759163 179759302 -9520252 + MER31-int LTR ERV1 1698 1841 -3095 2016 137 3 7 chr6 179759302 179759602 -9519952 + AluJb SINE Alu 1 299 -13 256 221 91 78 chr6 179759602 179759616 -9519938 + MER31-int LTR ERV1 1841 1853 -3083 769 264 62 62 chr6 179759739 179760349 -9519205 + MER31-int LTR ERV1 2378 2987 -1949 198 204 112 92 chr6 179760559 179760657 -9518897 + MER5B DNA MER1_type 1 100 -78 1061 223 50 95 chr6 179761025 179761487 -9518067 + MER31-int LTR ERV1 3171 3611 -1325 285 223 194 7 chr6 179761511 179761650 -9517904 + L1ME LINE L1 5535 5699 -422 2440 76 3 0 chr6 179761851 179762152 -9517402 + AluY SINE Alu 1 302 -9 189 0 0 0 chr6 179762670 179762691 -9516863 + (A)n Simple_repeat Simple_repeat 1 21 0 347 314 103 6 chr6 179762913 179763069 -9516485 - MIR SINE MIR -71 191 21 301 251 64 82 chr6 179763103 179763274 -9516280 - L2 LINE L2 -40 3273 3106 25 75 0 0 chr6 179763484 179763537 -9516017 + AT_rich Low_complexity Low_complexity 1 53 0 591 114 72 0 chr6 179763574 179763740 -9515814 + (TA)n Simple_repeat Simple_repeat 2 179 0 317 246 23 29 chr6 179763723 179763898 -9515656 + (TATATG)n Simple_repeat Simple_repeat 1 174 0 * 304 284 23 11 chr6 179763914 179764002 -9515552 + L1MC4 LINE L1 6615 6703 -1339 502 262 122 22 chr6 179764420 179764649 -9514905 - MER112 DNA MER1_type -3 253 2 238 253 91 30 chr6 179765065 179765164 -9514390 + MIR3 SINE MIR 93 197 -11 189 328 0 0 chr6 179765164 179765225 -9514329 + L3 LINE CR1 1508 1568 -9 571 224 0 17 chr6 179766537 179766648 -9512906 + FLAM_A SINE Alu 6 115 -23 206 0 69 0 chr6 179766648 179766677 -9512877 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 264 264 93 67 chr6 179766710 179766903 -9512651 - MLT1K LTR MaLR -180 408 211 290 211 28 0 chr6 179767195 179767266 -9512288 - L1ME LINE L1 -252 5869 5797 22 0 0 0 chr6 179767279 179767301 -9512253 + AT_rich Low_complexity Low_complexity 1 22 0 29 70 0 0 chr6 179768710 179768767 -9510787 + AT_rich Low_complexity Low_complexity 1 57 0 26 0 0 0 chr6 179768805 179768831 -9510723 + AT_rich Low_complexity Low_complexity 1 26 0 5009 74 17 27 chr6 179769475 179769707 -9509847 + L1PB2 LINE L1 5373 5606 -545 2205 114 0 0 chr6 179769707 179770004 -9509550 + AluSg SINE Alu 1 297 -13 5009 74 17 27 chr6 179770004 179770555 -9508999 + L1PB2 LINE L1 5606 6148 -3 790 188 125 0 chr6 179771120 179771296 -9508258 + MIR SINE MIR 10 207 -55 249 108 0 0 chr6 179772668 179772705 -9506849 + (CGG)n Simple_repeat Simple_repeat 1 37 0 222 37 0 0 chr6 179772980 179773007 -9506547 + (CGG)n Simple_repeat Simple_repeat 1 27 0 486 202 11 0 chr6 179774003 179774092 -9505462 - L2 LINE L2 -4 3309 3220 33 56 0 0 chr6 179774139 179774193 -9505361 + AT_rich Low_complexity Low_complexity 1 54 0 245 281 79 108 chr6 179774785 179774924 -9504630 + L2 LINE L2 3137 3271 -1 943 184 82 58 chr6 179775048 179775254 -9504300 - AluJo SINE Alu -101 211 1 1627 93 14 5 chr6 179775696 179775910 -9503644 - AluSg/x SINE Alu -18 294 79 2828 86 49 5 chr6 179776484 179776915 -9502639 - L1PA13 LINE L1 -5 6158 5709 386 265 47 148 chr6 179777656 179778015 -9501539 + L2 LINE L2 2950 3272 0 1527 172 27 15 chr6 179778015 179778277 -9501277 + AluJb SINE Alu 2 266 -46 2236 75 30 7 chr6 179778453 179778748 -9500806 + AluY SINE Alu 1 302 -9 278 351 178 4 chr6 179779121 179779363 -9500191 - L3 LINE CR1 -6 1571 1288 1763 125 68 129 chr6 179779749 179780047 -9499507 - MSTA LTR MaLR 0 428 166 2159 74 0 7 chr6 179780047 179780317 -9499237 - AluY SINE Alu -43 268 1 1763 125 68 129 chr6 179780317 179780474 -9499080 - MSTA LTR MaLR -262 166 1 7045 166 24 3 chr6 179780479 179781748 -9497806 - MSTA-int LTR MaLR -5 1646 352 2787 135 65 9 chr6 179781748 179782329 -9497225 - MER4B LTR ERV1 0 779 1 2165 113 8 17 chr6 179782331 179782686 -9496868 - MSTA-int LTR MaLR -1226 354 3 2148 152 113 10 chr6 179782688 179783076 -9496478 - MSTA LTR MaLR 0 428 1 413 267 149 19 chr6 179783104 179783265 -9496289 - MER5A DNA MER1_type 0 189 8 980 168 47 165 chr6 179783455 179783879 -9495675 - MLT1A2 LTR MaLR 0 374 1 748 249 67 45 chr6 179783879 179784025 -9495529 + MLT1B LTR MaLR 42 183 -207 2231 80 7 7 chr6 179784025 179784311 -9495243 + AluY SINE Alu 17 302 -9 748 249 67 45 chr6 179784311 179784451 -9495103 + MLT1B LTR MaLR 183 319 -71 257 51 26 0 chr6 179784451 179784490 -9495064 + (TTG)n Simple_repeat Simple_repeat 2 41 0 2180 103 0 0 chr6 179784492 179784784 -9494770 - AluSg SINE Alu -10 300 9 748 249 67 45 chr6 179784784 179784823 -9494731 + MLT1B LTR MaLR 319 378 -12 639 283 0 28 chr6 179785139 179785319 -9494235 - MER5B DNA MER1_type -3 175 1 188 225 42 70 chr6 179785372 179785443 -9494111 - L2 LINE L2 -8 3305 3237 478 192 17 17 chr6 179785560 179785680 -9493874 - L1MEc LINE L1 -6197 199 80 1850 200 42 27 chr6 179785682 179786133 -9493421 - MLT1C LTR MaLR -2 465 8 264 343 20 10 chr6 179786325 179786427 -9493127 + MER5A DNA MER1_type 63 165 -24 1913 196 2 40 chr6 179786524 179786564 -9492990 - MLT2D LTR ERVL -2 412 372 1377 193 24 99 chr6 179786564 179786661 -9492893 + MER4C LTR ERV1 1 104 -361 1968 98 0 64 chr6 179786661 179786956 -9492598 + AluSg SINE Alu 1 276 -34 218 0 94 0 chr6 179786959 179786991 -9492563 + A-rich Low_complexity Low_complexity 1 35 0 1377 193 24 99 chr6 179786991 179787392 -9492162 + MER4C LTR ERV1 106 465 0 1913 196 2 40 chr6 179787392 179787651 -9491903 - MLT2D LTR ERVL -42 372 131 1712 159 44 3 chr6 179787651 179787946 -9491608 - AluSx SINE Alu -5 307 1 1913 196 2 40 chr6 179787946 179788073 -9491481 - MLT2D LTR ERVL -283 131 1 3735 120 22 9 chr6 179788110 179788662 -9490892 + MER4E LTR ERV1 1 559 -220 357 286 103 32 chr6 179788672 179788798 -9490756 + MER5A DNA MER1_type 19 153 -36 31 82 0 0 chr6 179788819 179788892 -9490662 + AT_rich Low_complexity Low_complexity 1 73 0 1569 189 101 48 chr6 179789317 179789692 -9489862 - MSTD LTR MaLR 0 396 2 219 36 0 0 chr6 179790696 179790724 -9488830 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 273 119 0 0 chr6 179791894 179791936 -9487618 + (TG)n Simple_repeat Simple_repeat 1 42 0 2224 94 0 0 chr6 179791942 179792219 -9487335 - AluSg SINE Alu -33 277 1 1898 150 7 0 chr6 179792618 179792905 -9486649 - AluJb SINE Alu -11 301 13 396 322 108 31 chr6 179793485 179793836 -9485718 - L3b LINE CR1 -77 1506 1129 2567 118 28 6 chr6 179793840 179794195 -9485359 + THE1B LTR MaLR 2 364 0 2509 70 0 13 chr6 179794461 179794776 -9484778 - AluY SINE Alu 0 311 1 1888 157 64 42 chr6 179795271 179795486 -9484068 - MLT1A1 LTR MaLR 0 365 137 2154 119 0 7 chr6 179795486 179795779 -9483775 - AluSx SINE Alu -21 291 1 1888 157 64 42 chr6 179795779 179795920 -9483634 - MLT1A1 LTR MaLR -228 137 1 315 231 13 13 chr6 179795934 179796012 -9483542 + MIR SINE MIR 184 261 -1 39 80 0 0 chr6 179796129 179796217 -9483337 + AT_rich Low_complexity Low_complexity 1 88 0 25 54 6 0 chr6 179796233 179796331 -9483223 + AT_rich Low_complexity Low_complexity 1 53 0 1135 207 42 45 chr6 179796374 179796690 -9482864 - MER33 DNA MER1_type -15 309 1 222 246 29 29 chr6 179796918 179796987 -9482567 - MIR SINE MIR 0 262 194 207 258 152 0 chr6 179796984 179797050 -9482504 - MIR SINE MIR -174 88 13 * 374 318 61 0 chr6 179797091 179797239 -9482315 - MIR SINE MIR -43 219 63 294 255 21 43 chr6 179797339 179797433 -9482121 - L2 LINE L2 -2 3311 3220 831 161 7 36 chr6 179798254 179798427 -9481127 + FLAM_C SINE Alu 1 169 0 937 189 38 0 chr6 179798456 179798615 -9480939 + AluJb SINE Alu 120 284 -28 390 326 32 48 chr6 179799470 179799657 -9479897 - MIR SINE MIR -49 213 30 322 185 25 49 chr6 179800601 179800682 -9478872 - LTR67 LTR ERVL -7 550 472 1151 239 85 52 chr6 179800682 179801142 -9478412 + L1ME3A LINE L1 5674 6148 -22 397 243 44 22 chr6 179801150 179801286 -9478268 - LTR67 LTR ERVL -66 491 353 2710 181 148 13 chr6 179801777 179802405 -9477149 - L1MC3 LINE L1 -13 7772 7060 266 344 40 46 chr6 179805120 179805271 -9474283 + L3 LINE CR1 1079 1228 -349 293 267 22 22 chr6 179805459 179805549 -9474005 + MLT1I LTR MaLR 72 161 -248 496 302 144 26 chr6 179806159 179806546 -9473008 + L1ME4a LINE L1 5426 5859 -262 186 103 0 0 chr6 179806571 179806600 -9472954 + (TA)n Simple_repeat Simple_repeat 1 29 0 452 284 101 55 chr6 179806801 179807199 -9472355 + L1ME4a LINE L1 5518 5933 -188 21 0 0 0 chr6 179807379 179807400 -9472154 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr6 179807447 179807472 -9472082 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 2201 268 106 47 chr6 179807505 179808815 -9470739 + L2 LINE L2 1894 3310 -3 215 302 179 0 chr6 179809279 179809385 -9470169 - MIR SINE MIR -48 214 90 1468 165 100 0 chr6 179809494 179809754 -9469800 - AluJb SINE Alu -26 286 1 938 300 56 14 chr6 179809881 179810241 -9469313 - L2 LINE L2 0 3313 2939 4270 84 11 4 chr6 179810252 179810797 -9468757 - L1PA10 LINE L1 -3 6165 5617 514 287 74 48 chr6 179810806 179811036 -9468518 - L2 LINE L2 -520 2794 2559 24 0 0 0 chr6 179811792 179811816 -9467738 + AT_rich Low_complexity Low_complexity 1 24 0 1890 94 52 11 chr6 179811841 179812108 -9467446 - AluSq SINE Alu -35 278 1 506 111 0 0 chr6 179812261 179812333 -9467221 - MSTD LTR MaLR -2 394 323 471 321 23 0 chr6 179812455 179812586 -9466968 - L2 LINE L2 -3 3269 3136 450 0 0 0 chr6 179812668 179812718 -9466836 + (TG)n Simple_repeat Simple_repeat 1 50 0 456 345 113 19 chr6 179812819 179813286 -9466268 + L2 LINE L2 2452 2962 -352 207 0 0 0 chr6 179815069 179815092 -9464462 + (A)n Simple_repeat Simple_repeat 1 23 0 1894 144 0 22 chr6 179816004 179816316 -9463238 + AluJb SINE Alu 8 312 0 2283 113 0 0 chr6 179816704 179817006 -9462548 - AluSx SINE Alu 0 312 11 1831 141 33 27 chr6 179817142 179817441 -9462113 - AluJo SINE Alu -11 301 1 1710 162 3 52 chr6 179817619 179817946 -9461608 + AluJo SINE Alu 1 311 -1 510 310 84 80 chr6 179820211 179820675 -9458879 + L2 LINE L2 2807 3272 0 1568 218 0 3 chr6 179820810 179821117 -9458437 + AluJb SINE Alu 1 306 -6 246 62 0 0 chr6 179821521 179821553 -9458001 + (TG)n Simple_repeat Simple_repeat 2 33 0 27 29 0 0 chr6 179821568 179821602 -9457952 + AT_rich Low_complexity Low_complexity 1 34 0 540 360 78 14 chr6 179822067 179822361 -9457193 + L3 LINE CR1 370 682 -895 719 215 0 30 chr6 179822383 179822518 -9457036 + FLAM_A SINE Alu 1 131 -2 2198 99 7 3 chr6 179822519 179822821 -9456733 + AluSc SINE Alu 1 303 -6 288 172 0 0 chr6 179822929 179822987 -9456567 + (TG)n Simple_repeat Simple_repeat 2 59 0 301 341 18 22 chr6 179822991 179823214 -9456340 + L1MC4 LINE L1 7601 7822 -220 676 276 142 0 chr6 179823408 179823662 -9455892 + HAL1 LINE L1 1372 1661 -846 701 181 340 0 chr6 179823669 179823884 -9455670 + L1M4 LINE L1 4847 5134 -1012 * 7687 249 48 21 chr6 179823883 179828713 -9450841 + L1M2 LINE L1 1 4700 -1500 180 0 0 0 chr6 179828713 179828733 -9450821 + (CA)n Simple_repeat Simple_repeat 2 21 0 7687 249 48 21 chr6 179828733 179829655 -9449899 + L1M2 LINE L1 4700 5327 -873 1991 154 6 6 chr6 179829655 179829966 -9449588 + AluJo SINE Alu 1 311 -1 7687 249 48 21 chr6 179829966 179830141 -9449413 + L1M2 LINE L1 5327 5496 -704 385 166 63 23 chr6 179830142 179830445 -9449109 + (TG)n Simple_repeat Simple_repeat 1 315 0 542 230 27 27 chr6 179830445 179830632 -9448922 + HAL1 LINE L1 2212 2398 -109 234 158 0 70 chr6 179830650 179830707 -9448847 + HAL1 LINE L1 2450 2502 -5 207 243 14 27 chr6 179831732 179831806 -9447748 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 2175 109 14 0 chr6 179831827 179832111 -9447443 - AluSg SINE Alu -18 292 5 1843 128 7 14 chr6 179832294 179832583 -9446971 - AluJo SINE Alu -19 293 7 23 0 0 0 chr6 179833521 179833544 -9446010 + GC_rich Low_complexity Low_complexity 1 23 0 542 265 41 56 chr6 179834609 179834805 -9444749 + MIR SINE MIR 34 226 -36 6623 116 21 8 chr6 179834810 179835851 -9443703 + L1MA5A LINE L1 5229 6282 -15 2227 127 31 8 chr6 179835870 179836224 -9443330 + L1MA6 LINE L1 5939 6300 0 323 310 146 18 chr6 179836321 179836547 -9443007 + MIR SINE MIR 8 262 0 975 203 42 143 chr6 179837516 179837950 -9441604 - MLT1B LTR MaLR 0 390 1 242 220 0 0 chr6 179837951 179838001 -9441553 - MER102b DNA MER1_type 0 341 292 500 191 186 181 chr6 179838775 179838820 -9440734 + MSTD LTR MaLR 2 45 -351 1860 136 7 0 chr6 179838820 179839092 -9440462 - AluJb SINE Alu -16 296 23 500 191 186 181 chr6 179839092 179839439 -9440115 + MSTD LTR MaLR 45 396 0 1284 221 98 77 chr6 179840522 179840587 -9438967 + MER69 DNA AcHobo 2 64 -1162 1057 259 210 26 chr6 179840587 179841088 -9438466 + MLT1G1 LTR MaLR 3 595 0 1284 221 98 77 chr6 179841088 179841451 -9438103 + MER69 DNA AcHobo 64 439 -787 2503 84 9 0 chr6 179841475 179841798 -9437756 + L1PA13 LINE L1 5836 6161 -2 1111 196 119 13 chr6 179841862 179842173 -9437381 + MER69 DNA AcHobo 2010 2353 -173 716 309 141 35 chr6 179842283 179842582 -9436972 + L2 LINE L2 1944 2210 -1104 925 189 114 10 chr6 179842582 179842783 -9436771 - MER58A DNA MER1_type 0 224 3 716 309 141 35 chr6 179842783 179843084 -9436470 + L2 LINE L2 2210 2608 -706 375 315 83 73 chr6 179843282 179843329 -9436225 + L2 LINE L2 2920 2965 -348 3150 102 4 63 chr6 179843329 179843802 -9435752 - MER83 LTR ERV1 0 448 4 375 315 83 73 chr6 179843802 179844097 -9435457 + L2 LINE L2 2965 3307 -6 222 254 0 30 chr6 179844565 179844632 -9434922 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 634 219 29 73 chr6 179844633 179844838 -9434716 - L1MD2 LINE L1 -16 6343 6148 1446 192 31 4 chr6 179845261 179845388 -9434166 + AluJb SINE Alu 2 124 -188 495 0 0 0 chr6 179845388 179845443 -9434111 + (CA)n Simple_repeat Simple_repeat 2 56 0 1446 192 31 4 chr6 179845443 179845575 -9433979 + AluJb SINE Alu 124 268 -44 236 143 41 0 chr6 179845654 179845703 -9433851 + AluJb SINE Alu 252 302 0 1209 34 17 17 chr6 179846354 179846532 -9433022 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 322 179 36 0 chr6 179846536 179846620 -9432934 + CT-rich Low_complexity Low_complexity 1 87 0 1931 148 21 0 chr6 179846620 179846910 -9432644 - AluSx SINE Alu -15 297 2 3950 146 15 22 chr6 179847226 179847509 -9432045 + Tigger2 DNA MER2_type 79 363 -2355 2165 137 0 0 chr6 179847509 179847809 -9431745 + AluSx SINE Alu 1 300 -12 3950 146 15 22 chr6 179847809 179848196 -9431358 + Tigger2 DNA MER2_type 363 744 -1974 1262 136 102 4 chr6 179848262 179848497 -9431057 + Tigger2 DNA MER2_type 2451 2708 -10 210 71 0 0 chr6 179849093 179849121 -9430433 + (A)n Simple_repeat Simple_repeat 1 28 0 645 293 79 40 chr6 179850220 179850992 -9428562 - L1MEc LINE L1 -4888 1508 707 847 266 175 41 chr6 179851495 179851980 -9427574 + L1MCc LINE L1 363 912 -5511 325 297 65 51 chr6 179853087 179853457 -9426097 - L1MEc LINE L1 -2718 3497 3123 377 206 65 47 chr6 179853471 179853578 -9425976 - Charlie1 DNA MER1_type -17 2744 2636 2515 80 0 6 chr6 179853579 179853892 -9425662 + AluY SINE Alu 1 311 0 2255 100 3 7 chr6 179853902 179854202 -9425352 + AluSc SINE Alu 1 299 -10 902 219 30 34 chr6 179854210 179854447 -9425107 - Charlie1 DNA MER1_type -2523 238 3 1846 294 61 58 chr6 179854526 179855839 -9423715 - L1MEc LINE L1 -3167 3048 1740 2143 134 0 3 chr6 179855839 179856144 -9423410 - AluSx SINE Alu -8 304 1 2120 134 0 7 chr6 179856152 179856458 -9423096 - AluSx SINE Alu -8 304 1 1846 294 61 58 chr6 179856458 179857030 -9422524 - L1MEc LINE L1 -4481 1734 1165 270 0 0 0 chr6 179857030 179857060 -9422494 + (TG)n Simple_repeat Simple_repeat 1 30 0 243 0 0 0 chr6 179857059 179857086 -9422468 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 1846 294 61 58 chr6 179857060 179858173 -9421381 - L1MEc LINE L1 -5050 1165 112 2662 270 56 45 chr6 179859212 179862031 -9417523 + L1MCc LINE L1 365 3503 -3438 1498 136 9 4 chr6 179862034 179862262 -9417292 + AluSg/x SINE Alu 75 303 -7 1807 209 21 8 chr6 179862289 179862666 -9416888 + L1P LINE L1 3496 3877 -2269 5683 265 35 31 chr6 179862677 179862907 -9416647 - L1PA12 LINE L1 -4510 3071 2843 2364 83 0 16 chr6 179862907 179863221 -9416333 - AluSc SINE Alu 0 309 1 5683 265 35 31 chr6 179863221 179864869 -9414685 - L1PA12 LINE L1 -4738 2843 1227 918 178 25 0 chr6 179865436 179865593 -9413961 + AluSg/x SINE Alu 124 284 -26 315 260 19 129 chr6 179865813 179865984 -9413570 - MIR3 SINE MIR -52 156 15 275 146 18 0 chr6 179866005 179866060 -9413494 + GA-rich Low_complexity Low_complexity 2 57 0 1867 200 50 6 chr6 179866518 179866878 -9412676 - MLT1C LTR MaLR -91 376 1 24 96 0 0 chr6 179867146 179867219 -9412335 + AT_rich Low_complexity Low_complexity 1 73 0 317 297 90 22 chr6 179867317 179867539 -9412015 + MER102b DNA MER1_type 100 336 -5 294 279 149 19 chr6 179869052 179869213 -9410341 + MLT1H LTR MaLR 359 540 -9 2204 78 0 4 chr6 179870697 179870967 -9408587 + AluSg SINE Alu 21 289 -21 3218 206 55 17 chr6 179873743 179873804 -9405750 - LTR62 LTR ERVK -2 717 660 5008 32 0 4 chr6 179873804 179874364 -9405190 + LTR6B LTR ERV1 1 558 0 3218 206 55 17 chr6 179874364 179874993 -9404561 - LTR62 LTR ERVK -59 660 1 1690 141 157 85 chr6 179875052 179875429 -9404125 - MER4A LTR ERV1 0 664 261 294 67 22 22 chr6 179875429 179875474 -9404080 - MER4A LTR ERV1 -566 98 54 4886 107 40 26 chr6 179875507 179876489 -9403065 - MER4-int LTR ERV1 -2 6596 5629 2230 125 3 0 chr6 179876489 179876800 -9402754 - AluSq SINE Alu -1 312 1 4886 107 40 26 chr6 179876800 179876972 -9402582 - MER4-int LTR ERV1 -969 5629 3749 932 120 8 0 chr6 179877081 179877214 -9402340 - AluSq/x SINE Alu -179 134 1 9573 123 77 32 chr6 179877214 179879314 -9400240 - MER4-int LTR ERV1 -996 4019 1861 1203 156 138 0 chr6 179879314 179879538 -9400016 + LTR8 LTR ERV1 3 257 -434 4254 86 71 3 chr6 179879538 179880186 -9399368 - MER4-int LTR ERV1 -4103 2495 1804 1565 91 12 120 chr6 179880184 179880584 -9398970 - MER4-int LTR ERV1 -4210 1278 504 * 229 200 0 44 chr6 179880604 179880649 -9398905 - LTR49 LTR ERV1 -282 313 271 3030 130 118 28 chr6 179881121 179881738 -9397816 - MER4A-int LTR ERV1 -5925 673 1 1803 115 163 83 chr6 179881741 179882115 -9397439 - MER4A LTR ERV1 0 664 261 275 89 22 22 chr6 179882115 179882160 -9397394 - MER4A LTR ERV1 -566 98 54 267 185 25 118 chr6 179882882 179883001 -9396553 + L1M4 LINE L1 4756 4863 -1283 278 247 0 56 chr6 179883527 179883616 -9395938 - MER76 LTR ERV 0 688 605 197 329 7 51 chr6 179883937 179884074 -9395480 - L2 LINE L2 -1313 2001 1871 5168 141 13 8 chr6 179884428 179884524 -9395030 - L1PA16 LINE L1 -1 6165 6071 1927 152 35 35 chr6 179884524 179884899 -9394655 + THE1C LTR MaLR 1 375 0 5168 141 13 8 chr6 179884899 179885696 -9393858 - L1PA16 LINE L1 -95 6071 5263 1601 133 72 135 chr6 179885696 179885936 -9393618 - THE1C LTR MaLR 0 375 168 1976 132 7 17 chr6 179885936 179886231 -9393323 - AluSx SINE Alu -20 292 1 1601 133 72 135 chr6 179886231 179886390 -9393164 - THE1C LTR MaLR -207 168 1 5168 141 13 8 chr6 179886390 179886534 -9393020 - L1PA16 LINE L1 -903 5263 5121 2919 256 18 19 chr6 179886529 179887489 -9392065 - L1PA12 LINE L1 -4430 3154 2182 * 396 0 0 0 chr6 179887585 179887629 -9391925 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 310 296 0 0 chr6 179887765 179887863 -9391691 - L1PA12 LINE L1 -5399 2182 2085 648 328 129 35 chr6 179888017 179888553 -9391001 - L1PA12 LINE L1 -6200 1374 789 29 60 0 0 chr6 179888568 179888618 -9390936 + AT_rich Low_complexity Low_complexity 1 50 0 2587 62 0 0 chr6 179889461 179889765 -9389789 - AluY SINE Alu -4 307 4 861 249 43 86 chr6 179889996 179890393 -9389161 - MLT2C1 LTR ERVL 0 397 18 26 30 0 0 chr6 179890482 179890515 -9389039 + AT_rich Low_complexity Low_complexity 1 33 0 222 167 21 21 chr6 179890962 179891010 -9388544 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 1809 183 6 29 chr6 179891021 179891371 -9388183 + MER2 DNA MER2_type 2 343 -1 299 111 0 19 chr6 179891386 179891440 -9388114 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr6 179891446 179891467 -9388087 + AT_rich Low_complexity Low_complexity 1 21 0 605 278 110 0 chr6 179891912 179892139 -9387415 - MIR SINE MIR -3 259 8 959 198 95 16 chr6 179892306 179892548 -9387006 + L1MB2 LINE L1 5907 6167 -4 216 97 0 0 chr6 179892619 179892650 -9386904 + (A)n Simple_repeat Simple_repeat 1 31 0 340 338 94 26 chr6 179892651 179892885 -9386669 + L2 LINE L2 2708 2957 -357 319 361 92 0 chr6 179893055 179893185 -9386369 - MLT1J LTR MaLR -369 142 1 25674 97 12 11 chr6 179893618 179894791 -9384763 + L1PA8 LINE L1 1572 2742 -3430 2173 115 10 3 chr6 179894791 179895096 -9384458 + AluSc SINE Alu 1 307 -2 25674 97 12 11 chr6 179895096 179898042 -9381512 + L1PA8 LINE L1 2742 5694 -478 3669 70 2 0 chr6 179898246 179898717 -9380837 + L1PA8 LINE L1 5695 6166 -6 958 115 7 14 chr6 179898730 179898878 -9380676 - MER44D DNA MER2_type -134 475 59 253 238 98 16 chr6 179898915 179899037 -9380517 - L1ME3A LINE L1 -55 6115 5984 187 356 0 0 chr6 179901645 179901718 -9377836 - L2 LINE L2 -8 3264 3192 564 186 23 41 chr6 179902533 179902705 -9376849 + L1 LINE L1 3040 3208 -2938 587 119 53 21 chr6 179905120 179905364 -9374190 + (TG)n Simple_repeat Simple_repeat 1 252 0 300 265 113 22 chr6 179907292 179907477 -9372077 + LTR16A LTR ERVL 244 445 -5 519 141 0 0 chr6 179958019 179958090 -9321464 - AluS SINE Alu -241 72 2 225 0 0 0 chr6 179958427 179958433 -9321121 + (TG)n Simple_repeat Simple_repeat 1 31 0 225 0 0 0 chr6 179958433 179958458 -9321096 + (TG)n Simple_repeat Simple_repeat 2 26 0 247 295 0 38 chr6 179959166 179959271 -9320283 + (CATATA)n Simple_repeat Simple_repeat 6 106 0 198 330 50 40 chr6 179959271 179959371 -9320183 - L2 LINE L2 -36 3236 3136 180 299 221 0 chr6 179961389 179961466 -9318088 + L2 LINE L2 3210 3303 -10 22 0 0 0 chr6 179961603 179961625 -9317929 + AT_rich Low_complexity Low_complexity 1 22 0 317 330 0 0 chr6 179961667 179961758 -9317796 + L1MC4 LINE L1 6612 6702 -1340 413 185 8 0 chr6 179961794 179961913 -9317641 + (TA)n Simple_repeat Simple_repeat 2 121 0 247 266 0 11 chr6 179961913 179962007 -9317547 - L1MC4 LINE L1 -1339 6703 6611 217 240 100 20 chr6 179963223 179963323 -9316231 + L2 LINE L2 2978 3085 -187 542 305 115 10 chr6 179963484 179963684 -9315870 + MIR SINE MIR 18 238 -24 393 163 0 50 chr6 179964039 179964119 -9315435 + Charlie3 DNA MER1_type 1 76 -2634 2445 60 20 0 chr6 179965030 179965155 -9314399 + AluY SINE Alu 3 124 -187 315 0 0 0 chr6 179965155 179965190 -9314364 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2445 60 20 0 chr6 179965190 179965363 -9314191 + AluY SINE Alu 124 307 -4 2257 119 44 39 chr6 179966103 179966307 -9313247 - THE1B LTR MaLR 0 364 155 2171 102 0 3 chr6 179966307 179966635 -9312919 + AluSx SINE Alu 1 327 0 2257 119 44 39 chr6 179966635 179966791 -9312763 - THE1B LTR MaLR -209 155 1 2320 106 0 0 chr6 179968522 179968833 -9310721 + AluSx SINE Alu 1 311 -1 224 236 0 18 chr6 179968855 179968910 -9310644 + GA-rich Low_complexity Low_complexity 2 55 0 1848 164 7 0 chr6 179969159 179969451 -9310103 - AluSx SINE Alu -18 294 1 511 256 125 0 chr6 179970890 179971058 -9308496 + MIR SINE MIR 63 251 -11 395 305 53 32 chr6 179972159 179972349 -9307205 - MIR SINE MIR -49 213 20 267 79 0 0 chr6 179972458 179972496 -9307058 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 2315 104 0 0 chr6 179972643 179972942 -9306612 - AluSg SINE Alu -11 299 1 2466 168 25 28 chr6 179972965 179973400 -9306154 - Tigger2a DNA MER2_type 0 434 1 472 125 0 0 chr6 179973405 179973469 -9306085 - AluSg SINE Alu -206 104 41 327 157 143 122 chr6 179973962 179974109 -9305445 - MLT1E LTR MaLR 0 593 444 423 0 0 0 chr6 179974570 179974617 -9304937 + (TG)n Simple_repeat Simple_repeat 2 48 0 336 48 0 0 chr6 179974751 179974793 -9304761 + (TA)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr6 179975222 179975251 -9304303 + AT_rich Low_complexity Low_complexity 1 29 0 183 42 0 0 chr6 179975520 179975544 -9304010 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 819 152 0 14 chr6 179975837 179975975 -9303579 + L1PA15 LINE L1 5812 5947 -218 1466 136 0 52 chr6 179976111 179976227 -9303327 + L1PA15 LINE L1 5925 6023 -142 1960 129 0 0 chr6 179976227 179976499 -9303055 + AluSx SINE Alu 38 309 -3 1466 136 0 52 chr6 179976499 179976632 -9302922 + L1PA15 LINE L1 6023 6161 -4 367 303 20 8 chr6 179977387 179977887 -9301667 + (CACAA)n Simple_repeat Simple_repeat 1 506 0 400 289 23 0 chr6 179977982 179978155 -9301399 + (CACAA)n Simple_repeat Simple_repeat 3 179 0 304 318 23 0 chr6 179978167 179978340 -9301214 + (CACAA)n Simple_repeat Simple_repeat 3 179 0 443 276 23 9 chr6 179978352 179978704 -9300850 + (CACAA)n Simple_repeat Simple_repeat 1 357 0 24 0 0 0 chr6 179980592 179980616 -9298938 + AT_rich Low_complexity Low_complexity 1 24 0 212 326 0 0 chr6 179982119 179982165 -9297389 - L2 LINE L2 -17 3255 3210 285 346 68 0 chr6 179982746 179982879 -9296675 - MIR SINE MIR -31 231 90 2431 161 54 10 chr6 179983370 179983779 -9295775 - MSTA LTR MaLR -1 427 1 2210 108 3 3 chr6 179985294 179985590 -9293964 - AluSx SINE Alu -16 296 1 553 321 41 0 chr6 179985927 179986170 -9293384 + L1ME4a LINE L1 5533 5785 -336 32 26 0 0 chr6 179987011 179987050 -9292504 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr6 179987785 179987821 -9291733 + AT_rich Low_complexity Low_complexity 1 36 0 1319 144 9 31 chr6 179988645 179988867 -9290687 + AluJo SINE Alu 1 217 -95 474 259 0 0 chr6 179989104 179989212 -9290342 + MER58B DNA MER1_type 231 338 -3 204 255 0 20 chr6 179989257 179989308 -9290246 + CT-rich Low_complexity Low_complexity 4 53 0 297 285 16 8 chr6 179989391 179989514 -9290040 + L1ME4a LINE L1 5974 6097 -24 365 107 192 0 chr6 179991186 179991269 -9288285 + MSTD LTR MaLR 1 96 -269 815 209 33 6 chr6 179991283 179991465 -9288089 + MSTD LTR MaLR 210 396 0 606 268 45 0 chr6 179992547 179992704 -9286850 - MER5A DNA MER1_type -25 164 1 310 187 77 22 chr6 179993104 179993195 -9286359 - L1ME4a LINE L1 -16 6105 6010 1490 207 65 28 chr6 179993968 179994320 -9285234 - MLT1A1 LTR MaLR 0 365 1 217 282 135 53 chr6 179994435 179994473 -9285081 + L3 LINE CR1 1039 1072 -505 2720 107 6 3 chr6 179994473 179994836 -9284718 - THE1B LTR MaLR 0 364 1 217 282 135 53 chr6 179994836 179994967 -9284587 + L3 LINE CR1 1072 1222 -355 2529 214 131 70 chr6 179994985 179995780 -9283774 + MER21B LTR ERV1 18 860 -3 663 320 24 20 chr6 179995863 179996160 -9283394 + L3 LINE CR1 1247 1544 -33 2098 168 37 33 chr6 179996460 179997017 -9282537 - MLT2A2 LTR ERVL 0 554 2 206 231 0 0 chr6 179997573 179997612 -9281942 + GA-rich Low_complexity Low_complexity 1 39 0 812 144 0 43 chr6 179997612 179997799 -9281755 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 453 179 0 24 chr6 179998125 179998209 -9281345 - Tigger5 DNA MER2_type 0 2323 2242 289 226 0 0 chr6 179998200 179998262 -9281292 + Tigger5 DNA MER2_type 2259 2320 -3 * 254 271 0 0 chr6 179998272 179998331 -9281223 - Tigger5 DNA MER2_type -2263 60 2 581 206 131 38 chr6 179999481 179999641 -9279913 - MER3 DNA MER1_type -6 203 29 281 293 115 32 chr6 179999764 179999921 -9279633 + MIR SINE MIR 49 218 -44 21 0 0 0 chr6 180000441 180000462 -9279092 + AT_rich Low_complexity Low_complexity 1 21 0 1754 104 116 0 chr6 180001721 180001980 -9277574 + AluSx SINE Alu 3 291 -21 210 310 93 16 chr6 180002169 180002298 -9277256 - L2 LINE L2 -155 3117 2979 255 163 0 20 chr6 180002922 180002971 -9276583 - MIR SINE MIR -105 157 110 2123 153 55 0 chr6 180003075 180003421 -9276133 + MER47A DNA MER2_type 1 365 -1 501 314 6 13 chr6 180003519 180003678 -9275876 + MER5B DNA MER1_type 1 158 -20 331 273 62 110 chr6 180004322 180004421 -9275133 - L2 LINE L2 -1 3312 3210 2203 126 10 0 chr6 180004421 180004730 -9274824 + AluSx SINE Alu 1 312 0 189 0 0 0 chr6 180004736 180004757 -9274797 + (GA)n Simple_repeat Simple_repeat 2 22 0 331 273 62 110 chr6 180004757 180005006 -9274548 - L2 LINE L2 -108 3205 2974 771 244 17 0 chr6 180005076 180005248 -9274306 - L1MC/D LINE L1 -727 5515 5341 1171 167 58 35 chr6 180005249 180005506 -9274048 - AluJo SINE Alu 0 312 50 969 238 27 42 chr6 180005506 180005838 -9273716 - L1MC/D LINE L1 -816 5330 5004 2444 161 22 28 chr6 180005846 180006305 -9273249 - L1MB3 LINE L1 -1 6182 5727 315 397 37 16 chr6 180008214 180008403 -9271151 - L2 LINE L2 -227 3045 2853 2586 224 113 44 chr6 180008724 180010138 -9269416 - L1ME1 LINE L1 -44 6122 4601 281 302 161 36 chr6 180012580 180012772 -9266782 - L3b LINE CR1 -97 1486 1271 443 234 106 21 chr6 180013523 180013664 -9265890 - MER5B DNA MER1_type 0 178 26 293 338 72 7 chr6 180013669 180013808 -9265746 - L3 LINE CR1 -98 1479 1332 232 98 73 0 chr6 180014158 180014199 -9265355 + L1MB3 LINE L1 6138 6181 -2 1897 137 16 35 chr6 180015604 180015796 -9263758 - AluSx SINE Alu -5 307 122 254 28 0 28 chr6 180015796 180015832 -9263722 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1897 137 16 35 chr6 180015832 180015952 -9263602 - AluSx SINE Alu -190 122 1 1752 225 37 8 chr6 180016638 180017016 -9262538 - MER82 DNA MER2_type -18 635 247 249 161 129 0 chr6 180017401 180017463 -9262091 - MLT2B1 LTR ERVL -1 553 484 830 84 0 39 chr6 180017463 180017618 -9261936 + (TGGA)n Simple_repeat Simple_repeat 1 149 0 2085 194 81 14 chr6 180017640 180018084 -9261470 - MLT2B1 LTR ERVL -46 474 1 27 62 0 0 chr6 180018515 180018563 -9260991 + AT_rich Low_complexity Low_complexity 1 48 0 2061 118 3 10 chr6 180018565 180018861 -9260693 + AluSq SINE Alu 1 294 -19 441 0 0 0 chr6 180019342 180019391 -9260163 + (TG)n Simple_repeat Simple_repeat 2 50 0 316 311 44 30 chr6 180019868 180020003 -9259551 + L2 LINE L2 3172 3308 -5 2092 100 14 4 chr6 180020821 180021102 -9258452 + AluSg SINE Alu 1 284 -26 25 51 0 0 chr6 180021107 180021146 -9258408 + AT_rich Low_complexity Low_complexity 1 39 0 2415 96 0 6 chr6 180021158 180021472 -9258082 - AluSx SINE Alu 0 312 1 180 274 24 60 chr6 180021583 180021667 -9257887 - L2 LINE L2 -69 3244 3164 187 236 146 0 chr6 180022256 180022311 -9257243 - MER5B DNA MER1_type -12 166 104 216 204 0 0 chr6 180022481 180022525 -9257029 + T-rich Low_complexity Low_complexity 1 44 0 441 231 65 0 chr6 180022640 180022748 -9256806 - MER96B DNA MER1_type? 0 417 303 646 190 15 66 chr6 180022749 180022886 -9256668 - L1MC1 LINE L1 -12 6321 6192 355 206 0 0 chr6 180022889 180022957 -9256597 + MER1B DNA MER1_type 1 68 -269 24 32 0 0 chr6 180023442 180023473 -9256081 + AT_rich Low_complexity Low_complexity 1 31 0 691 98 125 45 chr6 180024195 180024307 -9255247 + FLAM_C SINE Alu 5 125 -18 29 32 0 48 chr6 180024313 180024375 -9255179 + AT_rich Low_complexity Low_complexity 1 59 0 249 139 0 0 chr6 180025175 180025211 -9254343 + U2 snRNA snRNA 1 36 -152 262 276 110 24 chr6 180026762 180026889 -9252665 + L2 LINE L2 3121 3258 -14 1990 141 0 13 chr6 180027315 180027620 -9251934 + AluSx SINE Alu 1 301 -11 465 19 0 0 chr6 180027800 180027854 -9251700 + (TA)n Simple_repeat Simple_repeat 2 55 0 2460 67 3 6 chr6 180028522 180028834 -9250720 + AluY SINE Alu 1 311 0 207 0 0 0 chr6 180028997 180029020 -9250534 + (A)n Simple_repeat Simple_repeat 1 23 0 24 0 0 0 chr6 180029676 180029700 -9249854 + AT_rich Low_complexity Low_complexity 1 24 0 2069 131 24 7 chr6 180029710 180030008 -9249546 + AluSx SINE Alu 1 303 -9 453 241 60 54 chr6 180030139 180030305 -9249249 - MIR SINE MIR -49 213 47 288 0 0 0 chr6 180030328 180030360 -9249194 + (A)n Simple_repeat Simple_repeat 1 32 0 206 377 115 15 chr6 180031066 180031196 -9248358 - MIR SINE MIR -119 143 1 1353 196 18 25 chr6 180031873 180032158 -9247396 - MER58B DNA MER1_type 0 341 59 250 372 44 9 chr6 180033386 180033499 -9246055 - L2 LINE L2 -15 3257 3141 253 219 27 27 chr6 180033810 180033883 -9245671 - HsTC2 DNA Tc2 -1 1897 1825 443 200 10 20 chr6 180033903 180034003 -9245551 + L1PB4 LINE L1 6044 6142 -14 25 0 0 0 chr6 180034003 180034028 -9245526 + AT_rich Low_complexity Low_complexity 1 25 0 443 191 0 11 chr6 180034029 180034118 -9245436 - HsTC2 DNA Tc2 -1808 90 3 23 0 0 0 chr6 180034231 180034254 -9245300 + AT_rich Low_complexity Low_complexity 1 23 0 1440 286 93 50 chr6 180034380 180035462 -9244092 + L2 LINE L2 2087 3272 -41 189 0 0 0 chr6 180035780 180035801 -9243753 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2064 129 0 0 chr6 180035804 180036083 -9243471 - AluSx SINE Alu -33 279 1 1542 211 71 43 chr6 180037573 180037737 -9241817 + MLT1C LTR MaLR 1 159 -308 2338 64 3 3 chr6 180037737 180038043 -9241511 - AluY SINE Alu 0 306 1 1542 211 71 43 chr6 180038043 180038298 -9241256 + MLT1C LTR MaLR 159 433 -34 1948 174 11 55 chr6 180039262 180039641 -9239913 - MLT1A1 LTR MaLR 0 365 4 216 357 54 9 chr6 180040888 180041000 -9238554 - L2 LINE L2 0 3313 3197 2173 145 15 21 chr6 180042069 180042406 -9237148 - MER1B DNA MER1_type 0 337 3 246 216 43 101 chr6 180042440 180042579 -9236975 - MIR SINE MIR -98 164 34 37 0 0 0 chr6 180043363 180043400 -9236154 + AT_rich Low_complexity Low_complexity 1 37 0 2328 104 3 0 chr6 180043491 180043789 -9235765 + AluSg SINE Alu 1 299 -11 877 208 91 0 chr6 180044968 180045165 -9234389 + MER46C DNA MER2_type 73 287 -51 237 282 45 27 chr6 180045180 180045290 -9234264 - MIR SINE MIR -94 168 57 2675 101 3 14 chr6 180045327 180045695 -9233859 - THE1B LTR MaLR 0 364 1 604 219 109 0 chr6 180045704 180045841 -9233713 + MER46C DNA MER2_type 136 287 -51 237 310 58 0 chr6 180045879 180045966 -9233588 - MIR SINE MIR -114 148 57 2238 113 0 0 chr6 180046535 180046835 -9232719 - AluSx SINE Alu -11 301 2 757 300 174 21 chr6 180046845 180047950 -9231604 - L2 LINE L2 -14 3299 2034 222 150 0 0 chr6 180048476 180048516 -9231038 + (TAG)n Simple_repeat Simple_repeat 1 40 0 183 309 85 0 chr6 180048518 180048612 -9230942 - MIR SINE MIR -9 253 152 278 229 56 19 chr6 180048759 180048882 -9230672 - MIR SINE MIR -52 156 27 1911 133 43 10 chr6 180050532 180050833 -9228721 - AluSx SINE Alu -1 311 1 202 294 130 27 chr6 180051355 180051539 -9228015 - L2 LINE L2 -819 2495 2293 215 310 45 32 chr6 180051740 180051895 -9227659 - L2 LINE L2 -120 3193 3037 227 318 12 0 chr6 180051905 180051990 -9227564 - L2 LINE L2 -1034 2280 2195 477 50 0 0 chr6 180052659 180052719 -9226835 + (TG)n Simple_repeat Simple_repeat 2 61 0 666 191 8 8 chr6 180054446 180054572 -9224982 + FLAM_A SINE Alu 1 126 -7 2313 84 3 19 chr6 180055185 180055495 -9224059 - AluSc SINE Alu -4 305 1 344 174 11 0 chr6 180057983 180058075 -9221479 + CT-rich Low_complexity Low_complexity 2 94 0 1311 265 104 8 chr6 180058337 180058876 -9220678 - MLT1G1 LTR MaLR -23 567 1 271 349 9 0 chr6 180063425 180063531 -9216023 + MIR SINE MIR 37 143 -65 606 278 75 26 chr6 180063652 180063918 -9215636 - MLT1K LTR MaLR -2 586 308 180 77 0 0 chr6 180065885 180065911 -9213643 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3403 154 35 79 chr6 180066886 180067605 -9211949 - LTR8 LTR ERV1 -4 687 1 2680 105 11 3 chr6 180069327 180069535 -9210019 - THE1C LTR MaLR -2 373 159 2292 116 0 0 chr6 180069535 180069838 -9209716 + AluSx SINE Alu 1 303 -9 2680 105 11 3 chr6 180069838 180069999 -9209555 - THE1C LTR MaLR -216 159 1 262 235 147 0 chr6 180070007 180070109 -9209445 + MIR SINE MIR 53 169 -93 1946 135 3 10 chr6 180070142 180070438 -9209116 + AluSx SINE Alu 1 294 -18 542 104 9 94 chr6 180071825 180071931 -9207623 - FLAM_C SINE Alu -12 131 35 190 289 0 0 chr6 180073473 180073518 -9206036 + MIR3 SINE MIR 140 184 -24 306 224 13 13 chr6 180074069 180074145 -9205409 + MIR SINE MIR 73 148 -114 369 0 0 0 chr6 180074538 180074579 -9204975 + (TG)n Simple_repeat Simple_repeat 2 42 0 2712 105 8 3 chr6 180075594 180075967 -9203587 + THE1C LTR MaLR 1 375 0 293 93 19 0 chr6 180076768 180076822 -9202732 + (TG)n Simple_repeat Simple_repeat 2 56 0 1849 181 70 3 chr6 180080005 180080347 -9199207 + MLT1A1 LTR MaLR 1 365 0 2045 181 104 13 chr6 180081469 180081932 -9197622 + LTR22 LTR ERVK 1 505 -4 230 303 26 13 chr6 180082482 180082558 -9196996 + MIR3 SINE MIR 87 163 -45 3809 70 0 6 chr6 180083005 180083491 -9196063 - L1PA6 LINE L1 -7 6147 5665 215 270 90 11 chr6 180086678 180086767 -9192787 - MIR SINE MIR -64 144 49 187 304 29 0 chr6 180087229 180087298 -9192256 + L2 LINE L2 3202 3272 0 276 243 29 0 chr6 180087303 180087373 -9192181 + CT-rich Low_complexity Low_complexity 1 72 0 299 335 129 23 chr6 180087460 180087847 -9191707 - L2 LINE L2 -124 3189 2761 21 0 0 0 chr6 180087940 180087961 -9191593 + AT_rich Low_complexity Low_complexity 1 21 0 1865 148 21 3 chr6 180087961 180088245 -9191309 - AluJo SINE Alu -22 290 2 2136 118 3 13 chr6 180088739 180089052 -9190502 + AluSx SINE Alu 1 310 -2 282 29 0 0 chr6 180089766 180089801 -9189753 + (CTTG)n Simple_repeat Simple_repeat 2 36 0 * 291 54 0 0 chr6 180089798 180089835 -9189719 + (TC)n Simple_repeat Simple_repeat 1 37 0 2318 107 0 19 chr6 180089835 180090152 -9189402 - AluSx SINE Alu -1 311 1 2399 147 66 0 chr6 180090183 180090579 -9188975 + MSTA LTR MaLR 7 428 0 397 286 44 92 chr6 180090984 180091098 -9188456 + MIR SINE MIR 2 120 -142 2385 85 0 3 chr6 180091098 180091393 -9188161 - AluSx SINE Alu -18 294 1 397 286 44 92 chr6 180091393 180091551 -9188003 + MIR SINE MIR 120 261 -1 492 313 86 21 chr6 180091654 180091945 -9187609 + L3 LINE CR1 616 925 -652 320 330 154 7 chr6 180092121 180092406 -9187148 + L3 LINE CR1 1250 1576 -1 796 295 8 4 chr6 180092695 180092946 -9186608 - MIR SINE MIR -9 253 2 31 0 0 0 chr6 180093625 180093656 -9185898 + AT_rich Low_complexity Low_complexity 1 31 0 329 297 68 14 chr6 180094087 180094235 -9185319 - MIR SINE MIR -17 245 90 1420 189 40 3 chr6 180094431 180094732 -9184822 - MER33 DNA MER1_type -2 322 11 537 301 125 17 chr6 180094828 180095117 -9184437 + MLT1J LTR MaLR 23 342 -169 310 323 135 80 chr6 180095263 180095551 -9184003 + L2 LINE L2 2969 3272 0 1768 214 72 22 chr6 180095706 180095824 -9183730 + MLT1C LTR MaLR 1 112 -355 2639 99 28 3 chr6 180095824 180096179 -9183375 - THE1B LTR MaLR 0 364 1 1768 214 72 22 chr6 180096179 180096505 -9183049 + MLT1C LTR MaLR 112 467 0 216 0 0 0 chr6 180097016 180097040 -9182514 + (TC)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr6 180097039 180097060 -9182494 + (CA)n Simple_repeat Simple_repeat 1 21 0 * 843 284 94 24 chr6 180097890 180098271 -9181283 + MLT1I LTR MaLR 2 409 0 267 275 78 88 chr6 180098540 180098733 -9180821 + Charlie8 DNA MER1_type 1 191 -2226 389 132 226 19 chr6 180098781 180098887 -9180667 + Charlie8 DNA MER1_type 345 472 -1945 412 283 72 56 chr6 180099021 180099201 -9180353 + MER5A DNA MER1_type 7 189 0 6061 155 24 16 chr6 180099602 180100326 -9179228 - L1MC1 LINE L1 0 6333 5594 2304 98 7 0 chr6 180100326 180100633 -9178921 - AluSg SINE Alu -1 309 1 6061 155 24 16 chr6 180100633 180101057 -9178497 - L1MC1 LINE L1 -739 5594 5175 326 319 76 0 chr6 180101635 180101754 -9177800 - MIR SINE MIR -32 230 103 585 332 38 8 chr6 180102270 180102505 -9177049 + MIR SINE MIR 13 254 -8 226 315 93 0 chr6 180102793 180102901 -9176653 - MIR SINE MIR -1 261 144 352 270 98 49 chr6 180102935 180103139 -9176415 - MIR SINE MIR -41 221 8 315 330 34 6 chr6 180103531 180103707 -9175847 + L3 LINE CR1 650 830 -747 10850 25 0 0 chr6 180103985 180105953 -9173601 - L1PA3 LINE L1 0 6155 4188 355 307 226 32 chr6 180106315 180106726 -9172828 + L3 LINE CR1 1079 1569 -8 210 369 0 0 chr6 180107330 180107414 -9172140 + L2 LINE L2 3189 3272 0 722 300 90 67 chr6 180107749 180108215 -9171339 - L3b LINE CR1 -2 1581 1105 2341 95 3 0 chr6 180108309 180108605 -9170949 - AluSp SINE Alu -16 297 1 254 333 30 24 chr6 180108856 180109021 -9170533 - MER102b DNA MER1_type -1 340 175 2423 95 0 7 chr6 180109059 180109365 -9170189 + AluSg SINE Alu 1 304 -6 24 0 0 0 chr6 180109381 180109405 -9170149 + AT_rich Low_complexity Low_complexity 1 24 0 182 339 0 0 chr6 180110825 180110881 -9168673 + L2 LINE L2 3169 3224 -89 2039 107 0 14 chr6 180112692 180112983 -9166571 - AluY SINE Alu -2 309 23 492 309 9 6 chr6 180113221 180113400 -9166154 + MIR SINE MIR 17 192 -65 2136 106 0 63 chr6 180115627 180116002 -9163552 + AluSx SINE Alu 1 354 0 2128 148 3 0 chr6 180116007 180116318 -9163236 + AluSx SINE Alu 1 312 0 2629 65 0 0 chr6 180116920 180117227 -9162327 + AluY SINE Alu 1 307 -4 760 208 7 0 chr6 180117285 180117434 -9162120 + L1MD2 LINE L1 6196 6345 -14 419 69 17 0 chr6 180117850 180117908 -9161646 + AluY SINE Alu 134 192 -119 2172 126 0 10 chr6 180119688 180119989 -9159565 - AluSx SINE Alu -14 298 1 185 326 132 21 chr6 180120041 180120185 -9159369 + L3 LINE CR1 544 703 -874 22 56 0 0 chr6 180123501 180123537 -9156017 + AT_rich Low_complexity Low_complexity 1 36 0 1349 163 0 18 chr6 180123804 180124025 -9155529 - AluJo SINE Alu -9 303 87 276 30 0 0 chr6 180124592 180124625 -9154929 + (TG)n Simple_repeat Simple_repeat 1 33 0 27 29 0 0 chr6 180125293 180125327 -9154227 + AT_rich Low_complexity Low_complexity 1 34 0 565 248 9 9 chr6 180125608 180125721 -9153833 + MER63A DNA MER1_type 89 201 -9 214 118 59 59 chr6 180126005 180126073 -9153481 + A-rich Low_complexity Low_complexity 4 71 0 834 236 114 109 chr6 180126167 180126756 -9152798 - LTR49 LTR ERV1 0 595 4 307 335 64 37 chr6 180126817 180127005 -9152549 + MER91A DNA MER1_type 1 193 -3 216 300 100 25 chr6 180128140 180128260 -9151294 + L3b LINE CR1 1330 1458 -125 251 237 32 73 chr6 180128909 180129034 -9150520 - MIR SINE MIR -62 146 33 2397 90 3 6 chr6 180129967 180130279 -9149275 - AluSp SINE Alu -2 311 1 2655 40 0 0 chr6 180130561 180130859 -9148695 + AluY SINE Alu 1 298 -13 234 0 0 0 chr6 180131603 180131629 -9147925 + (TC)n Simple_repeat Simple_repeat 2 27 0 234 0 0 0 chr6 180131628 180131654 -9147900 + (TA)n Simple_repeat Simple_repeat 1 26 0 302 145 0 14 chr6 180131841 180131910 -9147644 + (TG)n Simple_repeat Simple_repeat 2 69 0 3539 141 27 48 chr6 180132710 180133335 -9146219 + LTR9 LTR ERV1 1 612 0 206 369 62 23 chr6 180134107 180134237 -9145317 + L2 LINE L2 3133 3267 -5 603 286 83 18 chr6 180134948 180135335 -9144219 + MLT1J LTR MaLR 1 470 -41 390 317 21 0 chr6 180135606 180135748 -9143806 - MLT1L LTR MaLR 0 615 471 332 320 66 33 chr6 180135768 180135949 -9143605 - MLT1L LTR MaLR -415 200 14 2539 71 0 0 chr6 180136901 180137212 -9142342 - AluY SINE Alu 0 311 1 231 341 28 22 chr6 180139292 180139474 -9140080 - L1MC/D LINE L1 -1923 5885 5703 21 82 0 0 chr6 180139732 180139781 -9139773 + AT_rich Low_complexity Low_complexity 1 49 0 1031 186 85 0 chr6 180140589 180140777 -9138777 + MER3 DNA MER1_type 6 209 0 2370 97 0 0 chr6 180141000 180141300 -9138254 + AluSx SINE Alu 1 300 -12 2315 184 40 19 chr6 180141405 180141830 -9137724 + Tigger2a DNA MER2_type 1 434 0 24 67 0 0 chr6 180142394 180142439 -9137115 + AT_rich Low_complexity Low_complexity 1 45 0 440 279 59 7 chr6 180142840 180142976 -9136578 - MER69A DNA AcHobo -34 143 1 377 94 0 16 chr6 180143946 180144010 -9135544 + (TTCA)n Simple_repeat Simple_repeat 3 65 0 205 294 0 0 chr6 180144750 180144801 -9134753 + L3 LINE CR1 1524 1574 -3 459 249 158 12 chr6 180145637 180145802 -9133752 - MIR SINE MIR -22 240 52 2774 200 63 11 chr6 180146085 180146624 -9132930 + MLT1F1 LTR MaLR 1 567 0 21 0 0 0 chr6 180148227 180148248 -9131306 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr6 180148580 180148603 -9130951 + (TG)n Simple_repeat Simple_repeat 2 24 0 1526 298 39 48 chr6 180149240 180150182 -9129372 - L2 LINE L2 -2 3311 2381 294 95 0 0 chr6 180150182 180150224 -9129330 + (TG)n Simple_repeat Simple_repeat 2 43 0 1526 298 39 48 chr6 180150224 180150382 -9129172 - L2 LINE L2 -932 2381 2223 1083 278 271 6 chr6 180150896 180151705 -9127849 - L2 LINE L2 -1208 2106 1084 183 114 0 0 chr6 180152037 180152072 -9127482 + (A)n Simple_repeat Simple_repeat 1 35 0 282 284 52 8 chr6 180152080 180152214 -9127340 - L1ME3A LINE L1 -41 6129 5990 2003 102 8 0 chr6 180152249 180152515 -9127039 - AluSc SINE Alu -6 303 36 518 231 47 12 chr6 180152622 180152791 -9126763 - L1MC5 LINE L1 -476 7485 7311 222 269 22 15 chr6 180152793 180152927 -9126627 + CT-rich Low_complexity Low_complexity 2 136 0 1284 206 199 69 chr6 180152940 180153517 -9126037 - L1MC5 LINE L1 -671 7290 6639 21 0 0 0 chr6 180153764 180153785 -9125769 + AT_rich Low_complexity Low_complexity 1 21 0 258 32 0 0 chr6 180153865 180153896 -9125658 + (CA)n Simple_repeat Simple_repeat 2 32 0 240 362 34 13 chr6 180153947 180154096 -9125458 - HAL1b LINE L1 -708 640 489 207 0 0 0 chr6 180154174 180154197 -9125357 + (TG)n Simple_repeat Simple_repeat 2 24 0 216 163 0 0 chr6 180154197 180154240 -9125314 + (TA)n Simple_repeat Simple_repeat 1 43 0 384 328 122 21 chr6 180154266 180154650 -9124904 - HAL1b LINE L1 -887 461 39 24 0 0 0 chr6 180155267 180155291 -9124263 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 180155386 180155407 -9124147 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 180155636 180155666 -9123888 + AT_rich Low_complexity Low_complexity 1 30 0 1889 169 7 10 chr6 180157741 180158043 -9121511 + AluJo SINE Alu 1 301 -11 1276 343 122 14 chr6 180159455 180160574 -9118980 + L2 LINE L2 69 1307 -2007 290 283 109 0 chr6 180160889 180160981 -9118573 - L2 LINE L2 -10 3303 3202 553 335 139 16 chr6 180161003 180161573 -9117981 + L2 LINE L2 1442 2081 -1233 710 310 238 24 chr6 180161773 180162651 -9116903 + L2 LINE L2 2003 3072 -241 274 298 53 0 chr6 180162692 180162786 -9116768 + L2 LINE L2 3173 3271 -1 3285 270 150 52 chr6 180163670 180164832 -9114722 + L2 LINE L2 63 1469 -1845 2307 126 21 34 chr6 180164832 180165212 -9114342 + THE1C LTR MaLR 1 375 0 3285 270 150 52 chr6 180165212 180165869 -9113685 + L2 LINE L2 1469 2060 -1254 2123 114 3 3 chr6 180165879 180166168 -9113386 - AluSx SINE Alu -23 289 1 881 266 96 63 chr6 180166236 180166484 -9113070 + L2 LINE L2 2851 3122 -191 1806 149 7 30 chr6 180166484 180166499 -9113055 - AluSx SINE Alu -15 297 283 198 0 0 0 chr6 180166499 180166521 -9113033 + (TG)n Simple_repeat Simple_repeat 1 22 0 1806 149 7 30 chr6 180166521 180166806 -9112748 - AluSx SINE Alu -29 283 4 881 266 96 63 chr6 180166806 180167004 -9112550 + L2 LINE L2 3122 3312 -1 225 159 0 0 chr6 180167008 180167052 -9112502 + (TG)n Simple_repeat Simple_repeat 2 45 0 2428 88 0 0 chr6 180167773 180168078 -9111476 + AluY SINE Alu 1 305 -6 207 0 0 0 chr6 180169586 180169609 -9109945 + (A)n Simple_repeat Simple_repeat 1 23 0 * 212 203 34 14 chr6 180169608 180169756 -9109798 + (TA)n Simple_repeat Simple_repeat 2 152 0 200 167 69 0 chr6 180169768 180169840 -9109714 + (TA)n Simple_repeat Simple_repeat 1 77 0 2562 166 14 25 chr6 180169858 180170297 -9109257 + Tigger2a DNA MER2_type 1 434 0 1593 147 31 44 chr6 180170413 180170706 -9108848 - AluJb SINE Alu -23 289 1 239 340 91 14 chr6 180170869 180171122 -9108432 + L3 LINE CR1 1171 1509 -68 2303 183 60 58 chr6 180171126 180171640 -9107914 + MLT2B2 LTR ERVL 1 515 0 2054 125 7 0 chr6 180171841 180172151 -9107403 + AluSq SINE Alu 1 312 0 2660 51 0 0 chr6 180172900 180173211 -9106343 + AluY SINE Alu 1 311 0 369 0 0 0 chr6 180173217 180173258 -9106296 + (TA)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr6 180174863 180174885 -9104669 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 261 239 52 64 chr6 180175811 180175983 -9103571 + L1MC/D LINE L1 5600 5771 -399 608 206 27 96 chr6 180175984 180176203 -9103351 - L2 LINE L2 -6 3307 3104 565 252 26 7 chr6 180176581 180176732 -9102822 - MIR SINE MIR 0 262 109 184 326 35 35 chr6 180177047 180177133 -9102421 - MIR3 SINE MIR -25 183 98 260 321 127 0 chr6 180177413 180177547 -9102007 - L2 LINE L2 0 3313 3163 253 205 110 59 chr6 180177735 180177844 -9101710 + MER110A LTR ERV1 87 170 -298 626 311 65 13 chr6 180177919 180178228 -9101326 + MER110 LTR ERV1 167 491 0 2192 110 0 10 chr6 180179929 180180239 -9099315 - AluSc SINE Alu -2 307 1 1838 108 104 4 chr6 180180383 180180503 -9099051 + AluSx SINE Alu 3 110 -202 315 0 0 0 chr6 180180503 180180538 -9099016 + (CA)n Simple_repeat Simple_repeat 2 36 0 1838 108 104 4 chr6 180180538 180180685 -9098869 + AluSx SINE Alu 110 297 -15 2311 67 0 3 chr6 180181875 180182188 -9097366 - AluY SINE Alu 0 312 1 492 18 0 0 chr6 180182433 180182490 -9097064 + (CA)n Simple_repeat Simple_repeat 2 58 0 256 318 28 19 chr6 180183171 180183278 -9096276 - L1MC4a LINE L1 -1897 5911 5804 1332 193 44 36 chr6 180185504 180185779 -9093775 - AluJo SINE Alu -35 277 1 993 130 0 0 chr6 180187113 180187251 -9092303 - L1PB1 LINE L1 -3 6148 6011 1975 105 24 24 chr6 180187565 180187860 -9091694 + AluSq SINE Alu 1 295 -18 595 171 215 25 chr6 180188275 180188433 -9091121 + MER53 DNA DNA 1 188 -1 1953 148 0 29 chr6 180189237 180189548 -9090006 - AluSx SINE Alu -8 304 3 725 203 105 0 chr6 180189624 180189777 -9089777 + L1MC4 LINE L1 7316 7484 -558 1072 96 0 0 chr6 180189777 180189912 -9089642 + AluSq/x SINE Alu 1 135 -177 2255 106 0 10 chr6 180189912 180190213 -9089341 + AluSx SINE Alu 1 298 -14 1808 231 82 22 chr6 180190214 180190750 -9088804 + L1MC4 LINE L1 7475 8042 0 206 87 130 0 chr6 180190965 180191011 -9088543 + T-rich Low_complexity Low_complexity 2 53 0 1206 230 88 13 chr6 180191381 180191699 -9087855 + MER2 DNA MER2_type 1 342 -2 204 299 180 31 chr6 180191941 180192329 -9087225 - L2 LINE L2 -4 3309 2864 448 264 8 0 chr6 180192440 180192561 -9086993 - L1MD3 LINE L1 -1 7994 7873 473 277 10 72 chr6 180192677 180192872 -9086682 - MIR SINE MIR -28 234 52 382 284 149 27 chr6 180192904 180193232 -9086322 - L2 LINE L2 -641 2673 2306 206 222 50 61 chr6 180193232 180193331 -9086223 - L2 LINE L2 -1297 2017 1920 2154 105 0 41 chr6 180193331 180193646 -9085908 + AluSg SINE Alu 1 302 -8 213 196 0 0 chr6 180193792 180193838 -9085716 + GA-rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr6 180194137 180194159 -9085395 + AT_rich Low_complexity Low_complexity 1 22 0 563 280 99 33 chr6 180194960 180195233 -9084321 - MLT1G LTR MaLR -297 258 1 222 350 71 7 chr6 180195678 180195818 -9083736 + L3b LINE CR1 1271 1419 -164 388 223 85 31 chr6 180196398 180196528 -9083026 + MLT1L LTR MaLR 166 302 -313 252 278 132 47 chr6 180197080 180197292 -9082262 + LTR40b LTR ERVL 135 364 -98 198 0 0 0 chr6 180197298 180197320 -9082234 + (CA)n Simple_repeat Simple_repeat 1 22 0 315 271 0 0 chr6 180197551 180197621 -9081933 + L2 LINE L2 3203 3272 0 1630 212 67 25 chr6 180198270 180198718 -9080836 + MLT1C LTR MaLR 1 467 0 188 253 13 0 chr6 180200204 180200279 -9079275 + CT-rich Low_complexity Low_complexity 3 78 0 1646 188 31 0 chr6 180200626 180200919 -9078635 - MLT1A1 LTR MaLR 0 365 64 652 155 0 0 chr6 180200920 180201017 -9078537 - L1 LINE L1 -2544 3602 3506 2663 27 3 0 chr6 180201047 180201342 -9078212 - AluY SINE Alu -14 297 2 329 162 7 42 chr6 180201566 180201708 -9077846 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 221 243 0 40 chr6 180202294 180202368 -9077186 - L2 LINE L2 -74 3239 3169 1940 201 50 0 chr6 180202639 180203022 -9076532 + MER93a LTR ERV1 1 402 0 275 240 40 120 chr6 180203051 180203176 -9076378 - HAL1 LINE L1 -2350 157 43 1157 170 113 0 chr6 180203390 180203602 -9075952 + MLT1A1 LTR MaLR 130 365 0 1836 163 3 0 chr6 180204127 180204410 -9075144 + AluSx SINE Alu 14 297 -15 27 87 0 0 chr6 180204486 180204555 -9074999 + AT_rich Low_complexity Low_complexity 1 69 0 228 190 0 52 chr6 180204742 180204800 -9074754 + L1MC4 LINE L1 6648 6702 -1340 2238 106 7 0 chr6 180204976 180205268 -9074286 - AluSx SINE Alu -15 297 4 222 317 98 8 chr6 180205782 180205905 -9073649 - L2 LINE L2 -787 2527 2394 1723 285 94 75 chr6 180205910 180207510 -9072044 + HAL1 LINE L1 4 1634 -873 361 204 78 113 chr6 180207594 180207824 -9071730 + HAL1 LINE L1 1877 2098 -409 180 77 0 0 chr6 180207854 180207880 -9071674 + (TG)n Simple_repeat Simple_repeat 2 27 0 2289 93 0 23 chr6 180208000 180208301 -9071253 - AluSx SINE Alu -18 294 1 21 36 0 0 chr6 180208343 180208371 -9071183 + AT_rich Low_complexity Low_complexity 1 28 0 272 204 0 0 chr6 180208384 180208433 -9071121 + HsTC2 DNA Tc2 93 141 -1757 307 232 14 0 chr6 180208439 180208508 -9071046 + HsTC2 DNA Tc2 1289 1358 -540 481 230 81 84 chr6 180208606 180208915 -9070639 + HsTC2 DNA Tc2 1583 1890 -8 223 368 0 0 chr6 180209555 180209669 -9069885 - MIR SINE MIR -27 235 122 36 70 0 0 chr6 180209883 180209954 -9069600 + AT_rich Low_complexity Low_complexity 1 71 0 333 0 0 0 chr6 180209954 180209991 -9069563 + (CA)n Simple_repeat Simple_repeat 2 38 0 184 328 16 0 chr6 180209994 180210058 -9069496 - L2 LINE L2 -24 3289 3225 13509 121 43 14 chr6 180210761 180211900 -9067654 + Tigger1 DNA MER2_type 1 1234 -1184 2348 105 7 0 chr6 180211900 180212206 -9067348 + AluSx SINE Alu 1 308 -4 13509 121 43 14 chr6 180212206 180213188 -9066366 + Tigger1 DNA MER2_type 1234 2185 -233 390 146 0 0 chr6 180213181 180213236 -9066318 + Tigger1 DNA MER2_type 2362 2416 -2 * 1059 208 106 24 chr6 180213237 180213530 -9066024 - MLT1E2 LTR MaLR -1 625 309 267 171 250 23 chr6 180213680 180213768 -9065786 - MLT1E3 LTR MaLR -516 108 1 357 62 0 0 chr6 180214414 180214462 -9065092 + (GA)n Simple_repeat Simple_repeat 1 48 0 526 114 0 0 chr6 180214534 180214613 -9064941 + MADE1 DNA Mariner 1 79 -1 7221 55 16 8 chr6 180215875 180216866 -9062688 - L1PA7 LINE L1 0 6154 5157 22 0 0 0 chr6 180218699 180218721 -9060833 + AT_rich Low_complexity Low_complexity 1 22 0 386 263 145 28 chr6 180218948 180219127 -9060427 - MIR SINE MIR 0 262 63 1004 176 132 68 chr6 180219168 180219440 -9060114 + MER33 DNA MER1_type 1 295 -2290 2332 96 0 37 chr6 180219440 180219763 -9059791 - AluSx SINE Alu -1 311 1 1004 176 132 68 chr6 180219763 180219786 -9059768 + MER33 DNA MER1_type 295 315 -9 2702 169 31 70 chr6 180220612 180221186 -9058368 - MLT2B3 LTR ERVL -2 552 1 2453 221 122 42 chr6 180221359 180221716 -9057838 + Charlie2a DNA MER1_type 1132 1459 -1403 2285 89 0 58 chr6 180221716 180222042 -9057512 - AluSq SINE Alu -6 307 1 2453 221 122 42 chr6 180222042 180223095 -9056459 + Charlie2a DNA MER1_type 1459 2717 -145 2134 124 7 0 chr6 180223095 180223385 -9056169 + AluSq SINE Alu 1 292 -21 2453 221 122 42 chr6 180223385 180223542 -9056012 + Charlie2a DNA MER1_type 2717 2860 -2 318 237 0 15 chr6 180223964 180224039 -9055515 + MIR SINE MIR 74 146 -62 221 341 12 0 chr6 180224905 180224987 -9054567 - MIR SINE MIR -95 167 85 340 148 0 70 chr6 180225301 180225429 -9054125 + (GGGGA)n Simple_repeat Simple_repeat 5 123 0 405 265 11 33 chr6 180225458 180225639 -9053915 + GA-rich Low_complexity Low_complexity 2 178 0 * 495 206 0 74 chr6 180225514 180225703 -9053851 + G-rich Low_complexity Low_complexity 4 178 0 1814 227 61 25 chr6 180226353 180226877 -9052677 - MER44D DNA MER2_type -7 598 1 2353 100 0 0 chr6 180227576 180227876 -9051678 - AluSc SINE Alu -9 300 1 2502 58 6 10 chr6 180229302 180229613 -9049941 - AluY SINE Alu -1 310 1 823 190 46 35 chr6 180229654 180229828 -9049726 + MER20 DNA MER1_type 41 216 -3 2443 91 0 7 chr6 180230725 180231032 -9048522 + AluSx SINE Alu 3 307 -5 277 289 54 47 chr6 180232288 180232386 -9047168 - MIR SINE MIR -112 150 49 2375 89 3 10 chr6 180232386 180232688 -9046866 + AluSx SINE Alu 1 300 -12 277 289 54 47 chr6 180232688 180232738 -9046816 - MIR SINE MIR -213 49 1 369 0 0 0 chr6 180235156 180235197 -9044357 + (TTCCC)n Simple_repeat Simple_repeat 5 45 0 1285 165 4 60 chr6 180235346 180235595 -9043959 + AluJb SINE Alu 65 299 -13 2164 116 0 0 chr6 180236852 180237153 -9042401 - AluY SINE Alu -10 301 1 369 208 0 0 chr6 180237189 180237261 -9042293 + LTR24B LTR ERV1 4 75 -501 356 244 62 84 chr6 180237398 180237704 -9041850 + LTR24C LTR ERV1 277 635 0 183 205 0 0 chr6 180237704 180237743 -9041811 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 413 273 133 35 chr6 180239825 180239910 -9039644 + MER113 DNA MER1_type? 3 78 -443 2410 88 3 0 chr6 180239910 180240215 -9039339 - AluY SINE Alu -5 306 1 413 273 133 35 chr6 180240215 180240385 -9039169 + MER113 DNA MER1_type? 78 283 -238 278 299 9 9 chr6 180240443 180240550 -9039004 + MER113 DNA MER1_type? 382 488 -33 284 307 161 19 chr6 180240612 180240817 -9038737 - L3 LINE CR1 -350 1227 994 206 61 0 30 chr6 180241270 180241303 -9038251 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 2223 111 16 0 chr6 180241305 180241611 -9037943 - AluSx SINE Alu -1 311 1 27 0 0 0 chr6 180242240 180242267 -9037287 + AT_rich Low_complexity Low_complexity 1 27 0 246 257 68 14 chr6 180242558 180242632 -9036922 + MIR SINE MIR 1 78 -184 1302 218 99 3 chr6 180242750 180243043 -9036511 + MLT2C1 LTR ERVL 20 340 -57 381 216 0 0 chr6 180243072 180243160 -9036394 + CT-rich Low_complexity Low_complexity 1 88 0 536 290 39 85 chr6 180244151 180244403 -9035151 + L2 LINE L2 2996 3231 -82 2403 88 0 0 chr6 180244403 180244697 -9034857 - AluSg SINE Alu -16 294 1 536 290 39 85 chr6 180244697 180244775 -9034779 + L2 LINE L2 3231 3311 -2 2253 101 7 3 chr6 180244944 180245241 -9034313 + AluSc SINE Alu 1 298 -11 2072 168 30 32 chr6 180245432 180245981 -9033573 + MLT2A2 LTR ERVL 1 552 -2 185 295 0 16 chr6 180246421 180246482 -9033072 - L2 LINE L2 -6 3307 3248 204 200 0 0 chr6 180246921 180246971 -9032583 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 276 111 0 0 chr6 180249364 180249409 -9030145 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 2081 118 0 30 chr6 180250112 180250417 -9029137 - AluSc SINE Alu -13 296 1 184 307 156 55 chr6 180250554 180251460 -9028094 - L2 LINE L2 -356 2958 1962 536 105 0 0 chr6 180253310 180253396 -9026158 - AluSp/q SINE Alu 0 313 228 2097 119 4 0 chr6 180253396 180253674 -9025880 - AluSp SINE Alu -34 279 1 500 252 73 44 chr6 180253801 180254007 -9025547 - L1ME1 LINE L1 -15 6151 5940 1031 286 97 27 chr6 180254683 180255282 -9024272 - L1MEc LINE L1 -4605 2517 1877 * 1066 176 86 0 chr6 180255281 180255423 -9024131 - L1MA9 LINE L1 0 6312 6141 219 36 0 0 chr6 180255423 180255451 -9024103 + (TG)n Simple_repeat Simple_repeat 1 28 0 1066 176 86 0 chr6 180255451 180255541 -9024013 - L1MA9 LINE L1 -171 6141 6060 302 306 22 15 chr6 180255655 180255789 -9023765 - L1MEc LINE L1 -6226 197 63 243 88 0 0 chr6 180256602 180256636 -9022918 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 232 304 69 29 chr6 180256636 180256738 -9022816 - L2 LINE L2 -11 3302 3197 295 356 85 74 chr6 180256755 180257025 -9022529 - L2 LINE L2 -5 3267 2995 258 246 15 15 chr6 180257025 180257090 -9022464 + MLT1J LTR MaLR 2 66 -445 2273 121 0 0 chr6 180257327 180257633 -9021921 - AluSx SINE Alu -6 306 1 1882 199 82 13 chr6 180258413 180258463 -9021091 + MLT1D LTR MaLR 22 67 -438 2151 119 71 17 chr6 180258463 180258815 -9020739 + THE1C LTR MaLR 5 375 0 1882 199 82 13 chr6 180258815 180259217 -9020337 + MLT1D LTR MaLR 67 505 0 548 297 81 38 chr6 180259325 180259534 -9020020 - MIR SINE MIR -5 257 40 2190 300 45 2 chr6 180259890 180260510 -9019044 + MER115 DNA AcHobo 44 690 -3 213 94 0 0 chr6 180260800 180260832 -9018722 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 237 334 141 39 chr6 180260893 180261354 -9018200 + L3 LINE CR1 632 1139 -438 361 229 12 0 chr6 180261546 180261629 -9017925 + L3 LINE CR1 1345 1428 -149 2897 208 38 70 chr6 180261723 180263204 -9016350 + L1MA4 LINE L1 4848 6274 -26 843 277 14 0 chr6 180263745 180263958 -9015596 + Charlie4 DNA MER1_type 39 254 -1707 2213 95 0 26 chr6 180263958 180264262 -9015292 - AluY SINE Alu -15 296 1 2058 98 58 0 chr6 180264274 180264549 -9015005 - AluSc SINE Alu -18 291 1 459 195 133 59 chr6 180264858 180264877 -9014677 + Charlie4 DNA MER1_type 1721 1737 -224 1466 159 112 0 chr6 180264877 180265135 -9014419 - AluJb SINE Alu -25 287 1 459 195 133 59 chr6 180265135 180265265 -9014289 + Charlie4 DNA MER1_type 1737 1894 -67 2447 64 0 3 chr6 180265265 180265563 -9013991 + AluY SINE Alu 1 297 -14 459 195 133 59 chr6 180265563 180265636 -9013918 + Charlie4 DNA MER1_type 1894 1960 -1 2376 61 27 0 chr6 180266596 180266889 -9012665 + AluSp SINE Alu 1 301 -12 391 266 37 0 chr6 180267497 180267606 -9011948 + MER94 DNA DNA 6 118 -16 1699 170 3 10 chr6 180267923 180268223 -9011331 + AluJb SINE Alu 1 298 -14 21 36 0 0 chr6 180268803 180268831 -9010723 + AT_rich Low_complexity Low_complexity 1 28 0 1003 272 75 16 chr6 180269173 180269559 -9009995 + MLT1I LTR MaLR 1 409 0 679 203 10 147 chr6 180269559 180269747 -9009807 - MER45A DNA AcHobo -16 162 2 242 353 90 8 chr6 180269752 180269885 -9009669 - MIR SINE MIR -70 192 49 2184 98 0 14 chr6 180270683 180271023 -9008531 + AluSc SINE Alu 1 309 0 315 146 0 0 chr6 180271233 180271288 -9008266 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 3716 66 18 2 chr6 180273100 180273557 -9005997 + L1PA11 LINE L1 5706 6169 -5 370 341 27 62 chr6 180273763 180273989 -9005565 - MIR SINE MIR 0 262 45 874 226 73 0 chr6 180273989 180274193 -9005361 - MER20 DNA MER1_type 0 219 1 370 341 27 62 chr6 180274193 180274224 -9005330 - MIR SINE MIR -217 45 14 21 0 0 0 chr6 180275155 180275176 -9004378 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 180275438 180275459 -9004095 + AT_rich Low_complexity Low_complexity 1 21 0 315 309 88 15 chr6 180275842 180275978 -9003576 - MIR3 SINE MIR -60 148 3 263 300 41 31 chr6 180276468 180276627 -9002927 - MIR SINE MIR 0 262 96 748 247 26 0 chr6 180326744 180326938 -8952616 + MER63A DNA MER1_type 12 210 0 2145 110 13 3 chr6 180327256 180327564 -8951990 + AluSx SINE Alu 1 311 -1 219 69 0 0 chr6 180327564 180327593 -8951961 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 1934 117 0 65 chr6 180328877 180329184 -8950370 + AluSx SINE Alu 1 287 -25 347 94 98 14 chr6 180329184 180329479 -8950075 + (TA)n Simple_repeat Simple_repeat 1 319 0 22 0 0 0 chr6 180329502 180329524 -8950030 + AT_rich Low_complexity Low_complexity 1 22 0 282 95 108 6 chr6 180329524 180329682 -8949872 + (TA)n Simple_repeat Simple_repeat 2 175 0 1920 113 47 4 chr6 180329969 180330272 -8949282 - AluSx SINE Alu 0 315 1 233 287 37 37 chr6 180331601 180331709 -8947845 + MIR SINE MIR 114 221 -41 2426 28 49 0 chr6 180332128 180332413 -8947141 - AluY SINE Alu -12 299 1 1218 242 163 17 chr6 180333527 180333945 -8945609 - MLT1H1 LTR MaLR -76 479 1 473 265 65 29 chr6 180336395 180336565 -8942989 - MIR SINE MIR -11 251 76 2190 108 0 0 chr6 180336972 180337258 -8942296 + AluSg SINE Alu 1 286 -24 811 147 0 15 chr6 180337351 180337487 -8942067 - FRAM SINE Alu -9 167 34 364 200 0 82 chr6 180337668 180337753 -8941801 - AluJo SINE Alu -148 154 77 864 237 29 14 chr6 180337754 180337961 -8941593 - AluJb SINE Alu -102 210 1 778 277 77 7 chr6 180340534 180340844 -8938710 - L1MD2 LINE L1 -375 5984 5653 836 289 122 30 chr6 180341069 180341470 -8938084 - L2 LINE L2 -2072 1242 805 300 352 19 0 chr6 180341473 180341578 -8937976 - MER5A DNA MER1_type 0 189 83 180 331 74 34 chr6 180341609 180341784 -8937770 - L2 LINE L2 -2504 810 629 2357 249 106 108 chr6 180341878 180343338 -8936216 - Charlie7 DNA MER1_type -416 2196 740 2221 84 3 3 chr6 180343338 180343698 -8935856 - AluSp SINE Alu 0 360 1 2357 249 106 108 chr6 180343698 180344385 -8935169 - Charlie7 DNA MER1_type -1872 740 53 2551 46 3 3 chr6 180344426 180344729 -8934825 - AluY SINE Alu -8 303 1 313 143 0 0 chr6 180344912 180344961 -8934593 - MER5A DNA MER1_type -80 109 61 208 147 0 0 chr6 180344961 180344995 -8934559 + (T)n Simple_repeat Simple_repeat 1 34 0 832 207 35 6 chr6 180345131 180345300 -8934254 + MER58B DNA MER1_type 167 340 -1 2201 125 0 10 chr6 180346160 180346472 -8933082 + AluSx SINE Alu 1 309 -3 236 93 47 0 chr6 180346584 180346627 -8932927 + CT-rich Low_complexity Low_complexity 4 48 0 1854 114 57 0 chr6 180346630 180346893 -8932661 - AluSx SINE Alu -34 278 1 2340 94 0 25 chr6 180347071 180347391 -8932163 - AluSx SINE Alu 0 312 1 2211 109 3 13 chr6 180350467 180350771 -8928783 + AluY SINE Alu 1 301 -10 180 302 159 24 chr6 180350966 180351092 -8928462 - MER5B DNA MER1_type 0 178 36 814 265 106 8 chr6 180351095 180351391 -8928163 + L1ME3A LINE L1 5476 5803 -359 839 201 47 0 chr6 180351394 180351563 -8927991 + MER45A DNA AcHobo 1 177 -1 722 298 74 20 chr6 180351572 180351871 -8927683 + L1ME3A LINE L1 5852 6166 -4 2277 88 0 29 chr6 180352345 180352651 -8926903 + AluY SINE Alu 1 297 -14 1688 203 0 3 chr6 180353500 180353795 -8925759 + AluJb SINE Alu 1 294 -18 300 234 27 45 chr6 180354583 180354620 -8924934 - L1MC4 LINE L1 -1320 6722 6686 1999 118 7 0 chr6 180354620 180354909 -8924645 + AluSx SINE Alu 1 291 -21 300 234 27 45 chr6 180354909 180354982 -8924572 - L1MC4 LINE L1 -1356 6686 6614 370 49 85 37 chr6 180354993 180355157 -8924397 + (TA)n Simple_repeat Simple_repeat 1 172 0 307 112 69 0 chr6 180355164 180355280 -8924274 + (TTATA)n Simple_repeat Simple_repeat 1 124 0 28 61 0 0 chr6 180355281 180355330 -8924224 + AT_rich Low_complexity Low_complexity 1 49 0 202 116 83 16 chr6 180355337 180355458 -8924096 + (TTATA)n Simple_repeat Simple_repeat 1 129 0 295 112 106 0 chr6 180355471 180355632 -8923922 + (TA)n Simple_repeat Simple_repeat 2 179 0 243 97 117 0 chr6 180355650 180355804 -8923750 + (TA)n Simple_repeat Simple_repeat 1 172 0 491 65 112 2 chr6 180355818 180356238 -8923316 + (TA)n Simple_repeat Simple_repeat 1 466 0 375 260 156 6 chr6 180357926 180358099 -8921455 + L2 LINE L2 3106 3304 -9 258 305 42 0 chr6 180358124 180358219 -8921335 + MIR SINE MIR 156 254 -8 192 85 0 64 chr6 180359049 180359096 -8920458 + (TCTCC)n Simple_repeat Simple_repeat 3 46 0 702 100 0 0 chr6 180359937 180360027 -8919527 + 5S rRNA rRNA 1 90 -31 224 29 0 29 chr6 180360694 180360728 -8918826 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2075 126 0 0 chr6 180360731 180361016 -8918538 - AluSx SINE Alu -27 285 1 2130 141 0 6 chr6 180361503 180361816 -8917738 - AluSx SINE Alu -1 311 1 2218 99 0 0 chr6 180362052 180362375 -8917179 + AluSx SINE Alu 1 323 0 775 204 33 35 chr6 180362609 180362872 -8916682 + MER58 DNA MER1_type 2 2396 -24 15372 130 33 22 chr6 180363351 180363512 -8916042 + Tigger1 DNA MER2_type 1 159 -2259 2304 86 0 0 chr6 180363512 180363819 -8915735 - AluY SINE Alu 0 307 1 15372 130 33 22 chr6 180363819 180365159 -8914395 + Tigger1 DNA MER2_type 159 1541 -877 2135 119 10 13 chr6 180365159 180365470 -8914084 + AluSg SINE Alu 1 310 0 15372 130 33 22 chr6 180365470 180366357 -8913197 + Tigger1 DNA MER2_type 1541 2417 -1 232 299 13 0 chr6 180367578 180367655 -8911899 + (TTCA)n Simple_repeat Simple_repeat 3 80 0 775 237 194 37 chr6 180367868 180368269 -8911285 + MLT1C LTR MaLR 1 464 -3 205 300 50 10 chr6 180368381 180368481 -8911073 - L2 LINE L2 -766 2548 2445 6706 64 8 2 chr6 180368516 180369364 -8910190 - L1PA8 LINE L1 -13 6159 5307 1084 102 19 12 chr6 180369361 180369548 -8910006 + L1M LINE L1 5150 5334 -832 * 180 219 0 0 chr6 180369832 180369873 -8909681 + L2 LINE L2 3273 3313 0 2111 118 0 26 chr6 180370474 180370787 -8908767 - AluSg SINE Alu -5 305 1 2294 93 3 26 chr6 180370941 180371251 -8908303 + AluSq SINE Alu 1 303 -10 835 259 43 0 chr6 180372680 180372865 -8906689 + MER58A DNA MER1_type 1 193 -31 1969 106 4 0 chr6 180372866 180373131 -8906423 - AluSx SINE Alu -15 297 32 2198 99 0 0 chr6 180373722 180374031 -8905523 - AluSq SINE Alu 0 310 2 591 290 68 16 chr6 180374127 180374375 -8905179 - L1M4 LINE L1 -2261 3885 3625 478 251 50 62 chr6 180374810 180374989 -8904565 + MER5B DNA MER1_type 1 177 -1 2285 117 0 0 chr6 180374999 180375307 -8904247 - AluSg SINE Alu -2 308 1 36 40 0 0 chr6 180375769 180375819 -8903735 + AT_rich Low_complexity Low_complexity 1 50 0 1862 150 0 31 chr6 180375822 180376146 -8903408 - AluSx SINE Alu 0 315 1 1491 153 8 35 chr6 180377653 180377907 -8901647 - AluJo SINE Alu -26 286 40 2328 101 0 0 chr6 180378007 180378305 -8901249 - AluSx SINE Alu -14 298 1 1911 129 34 14 chr6 180378334 180378629 -8900925 + AluSx SINE Alu 1 301 -11 2146 185 31 8 chr6 180378695 180379079 -8900475 - MSTD LTR MaLR -3 393 1 2373 81 7 0 chr6 180379515 180379812 -8899742 - AluSc SINE Alu -10 299 1 186 330 21 43 chr6 180380078 180380172 -8899382 - L2 LINE L2 -1 3271 3180 449 283 9 0 chr6 180380172 180380285 -8899269 + MER94 DNA DNA 10 123 -11 319 247 124 10 chr6 180382024 180382121 -8897433 + MIR3 SINE MIR 82 189 -19 338 289 96 0 chr6 180382271 180382375 -8897179 + L2 LINE L2 3192 3305 -8 2272 89 0 0 chr6 180382791 180383082 -8896472 - AluSc SINE Alu -18 291 1 224 139 0 0 chr6 180383633 180383669 -8895885 + L2 LINE L2 3278 3313 0 214 347 0 13 chr6 180385023 180385098 -8894456 + MIR SINE MIR 67 140 -122 253 222 19 0 chr6 180385436 180385447 -8894107 + MER3 DNA MER1_type 36 47 -162 741 192 104 39 chr6 180385447 180385629 -8893925 - MER3 DNA MER1_type 0 209 16 255 31 0 0 chr6 180386277 180386309 -8893245 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 1991 141 0 14 chr6 180386312 180386602 -8892952 - AluSx SINE Alu -26 286 1 2060 113 51 0 chr6 180387258 180387550 -8892004 + AluSg SINE Alu 1 307 -3 1720 124 120 0 chr6 180387623 180387889 -8891665 - AluSx SINE Alu -14 298 1 1370 196 73 86 chr6 180388069 180388456 -8891098 - MER31B LTR ERV1 -9 457 75 2330 108 0 0 chr6 180388456 180388763 -8890791 + AluSx SINE Alu 1 307 -5 1370 196 73 86 chr6 180388763 180388838 -8890716 - MER31B LTR ERV1 -391 75 1 2286 103 15 3 chr6 180388942 180389272 -8890282 - L1PA12 LINE L1 -426 5742 5409 2735 99 5 25 chr6 180389272 180389661 -8889893 + L1PA12 LINE L1 5773 6159 -9 518 310 33 0 chr6 180391535 180391719 -8887835 - MIR SINE MIR -36 226 37 242 299 117 0 chr6 180391896 180391973 -8887581 + MIR SINE MIR 150 235 -27 217 157 133 108 chr6 180397036 180397119 -8882435 + MIR SINE MIR 76 160 -102 415 270 73 6 chr6 180397174 180397352 -8882202 + MER20 DNA MER1_type 30 219 0 2244 102 0 10 chr6 180397461 180397764 -8881790 - AluSc SINE Alu -9 300 1 825 117 0 36 chr6 180399335 180399472 -8880082 + L1MA8 LINE L1 6156 6287 -4 2470 65 0 3 chr6 180399554 180399864 -8879690 + AluY SINE Alu 1 309 -2 182 313 98 55 chr6 180399902 180400065 -8879489 + MIR SINE MIR 23 192 -70 180 0 0 0 chr6 180400236 180400256 -8879298 + (T)n Simple_repeat Simple_repeat 1 20 0 2083 128 23 0 chr6 180400856 180401161 -8878393 - AluSx SINE Alu 0 312 1 1745 140 4 39 chr6 180401162 180401441 -8878113 - AluSq SINE Alu -16 297 29 2198 122 7 0 chr6 180402298 180402602 -8876952 + AluSx SINE Alu 1 306 -6 24 53 0 0 chr6 180403789 180403827 -8875727 + AT_rich Low_complexity Low_complexity 1 38 0 2140 233 103 11 chr6 180404694 180405395 -8874159 - MER69 DNA AcHobo 0 2526 1762 * 2573 279 69 25 chr6 180405391 180406352 -8873202 - MER69 DNA AcHobo -1521 1005 3 1519 202 11 7 chr6 180406873 180407160 -8872394 + AluJo SINE Alu 5 292 -20 1174 330 48 17 chr6 180407239 180407416 -8872138 - MLT1J LTR MaLR -13 498 328 2097 128 7 0 chr6 180407416 180407712 -8871842 - AluSx SINE Alu -14 298 1 1174 330 48 17 chr6 180407712 180408009 -8871545 - MLT1J LTR MaLR -183 328 9 1951 116 4 0 chr6 180408102 180408369 -8871185 + AluSx SINE Alu 45 312 0 295 309 123 30 chr6 180408438 180408771 -8870783 + L1MC/D LINE L1 5500 5863 -1945 280 272 17 28 chr6 180409316 180409496 -8870058 + (TA)n Simple_repeat Simple_repeat 2 179 0 89 69 0 0 chr6 180409500 180409673 -8869881 + AT_rich Low_complexity Low_complexity 1 173 0 633 264 118 95 chr6 180409673 180410120 -8869434 - L1ME LINE L1 -406 5715 5255 218 381 0 0 chr6 180410235 180410319 -8869235 - L2 LINE L2 -5 3267 3184 25 0 0 0 chr6 180410475 180410500 -8869054 + AT_rich Low_complexity Low_complexity 1 25 0 2001 122 27 3 chr6 180410596 180410890 -8868664 - AluSx SINE Alu -11 301 1 1718 159 10 10 chr6 180411473 180411775 -8867779 + AluJo SINE Alu 1 302 -10 201 175 0 0 chr6 180413073 180413113 -8866441 + (TG)n Simple_repeat Simple_repeat 1 40 0 769 86 0 0 chr6 180413363 180413456 -8866098 - AluSg/x SINE Alu -15 294 202 1686 273 31 44 chr6 180413574 180414193 -8865361 - L1ME1 LINE L1 -2 6164 5554 1078 283 37 13 chr6 180414231 180414613 -8864941 - L1MEc LINE L1 -5971 425 35 537 366 43 0 chr6 180414930 180415094 -8864460 + MER91A DNA MER1_type 4 174 -22 1991 98 21 36 chr6 180415127 180415304 -8864250 + THE1B LTR MaLR 1 179 -196 2483 74 3 0 chr6 180415304 180415602 -8863952 + AluSp SINE Alu 1 299 -14 1991 98 21 36 chr6 180415602 180415747 -8863807 + THE1B LTR MaLR 179 375 0 1994 159 46 46 chr6 180417426 180417516 -8862038 + MLT1B LTR MaLR 1 90 -300 2100 124 0 0 chr6 180417516 180417831 -8861723 - AluSx SINE Alu 0 315 1 1994 159 46 46 chr6 180417831 180418129 -8861425 + MLT1B LTR MaLR 89 390 0 2504 87 0 0 chr6 180418138 180418449 -8861105 + AluY SINE Alu 1 311 0 222 91 0 0 chr6 180419076 180419109 -8860445 + (TG)n Simple_repeat Simple_repeat 2 34 0 331 254 108 43 chr6 180420083 180420315 -8859239 + L1ME3A LINE L1 5924 6170 0 367 155 24 0 chr6 180420487 180420571 -8858983 + (TCTA)n Simple_repeat Simple_repeat 2 87 0 989 241 46 80 chr6 180421351 180421444 -8858110 + MLT1J2 LTR MaLR 7 102 -348 495 0 0 0 chr6 180421444 180421499 -8858055 + (CA)n Simple_repeat Simple_repeat 1 55 0 989 241 46 80 chr6 180421499 180421858 -8857696 + MLT1J2 LTR MaLR 102 444 -6 280 218 51 26 chr6 180422185 180422263 -8857291 - L1ME LINE L1 -505 5616 5537 1560 206 14 3 chr6 180422313 180422605 -8856949 - AluJb SINE Alu -17 295 1 313 255 38 0 chr6 180422607 180422713 -8856841 - L1ME LINE L1 -737 5427 5318 469 295 62 0 chr6 180423666 180423795 -8855759 - MER5B DNA MER1_type -39 139 3 491 281 62 21 chr6 180423809 180424001 -8855553 + MIR SINE MIR 2 201 -61 449 274 146 24 chr6 180424085 180424297 -8855257 + MIR SINE MIR 10 247 -15 1034 141 18 3 chr6 180424713 180424995 -8854559 + (TA)n Simple_repeat Simple_repeat 2 287 0 2200 98 17 0 chr6 180426010 180426305 -8853249 - AluSx SINE Alu -12 300 1 216 97 0 0 chr6 180426727 180426758 -8852796 + (T)n Simple_repeat Simple_repeat 1 31 0 23 33 0 0 chr6 180427106 180427136 -8852418 + AT_rich Low_complexity Low_complexity 1 30 0 2518 79 0 0 chr6 180427252 180427557 -8851997 - AluY SINE Alu -6 305 1 337 178 0 84 chr6 180428037 180428144 -8851410 - HAL1b LINE L1 -505 843 746 27 0 0 0 chr6 180428584 180428611 -8850943 + AT_rich Low_complexity Low_complexity 1 27 0 1828 122 4 0 chr6 180428621 180428868 -8850686 + AluSq SINE Alu 1 248 -65 180 0 0 0 chr6 180428871 180428891 -8850663 + (A)n Simple_repeat Simple_repeat 1 20 0 27 0 0 0 chr6 180428929 180428956 -8850598 + AT_rich Low_complexity Low_complexity 1 27 0 589 248 0 8 chr6 180428957 180429074 -8850480 - FLAM_C SINE Alu -26 117 2 317 293 31 79 chr6 180429094 180429323 -8850231 - HAL1 LINE L1 -746 1761 1544 2580 121 43 79 chr6 180429556 180429598 -8849956 - MLT2A2 LTR ERVL 0 453 411 210 71 0 0 chr6 180429598 180429626 -8849928 + (TA)n Simple_repeat Simple_repeat 2 29 0 2580 121 43 79 chr6 180429626 180430053 -8849501 - MLT2A2 LTR ERVL -42 411 1 2044 130 0 0 chr6 180430738 180431057 -8848497 + AluSx SINE Alu 1 319 0 22 56 0 0 chr6 180431893 180431929 -8847625 + AT_rich Low_complexity Low_complexity 1 36 0 4499 135 58 34 chr6 180432901 180433190 -8846364 + Tigger1 DNA MER2_type 1577 1857 -561 2295 108 3 0 chr6 180433190 180433497 -8846057 - AluSq SINE Alu -5 308 1 4499 135 58 34 chr6 180433497 180434027 -8845527 + Tigger1 DNA MER2_type 1857 2416 -2 2269 104 3 0 chr6 180434838 180435136 -8844418 + AluSx SINE Alu 1 299 -13 274 193 65 46 chr6 180435351 180435480 -8844074 + MLT1H LTR MaLR 60 240 -309 244 276 26 52 chr6 180435764 180435837 -8843717 + MLT1H1 LTR MaLR 443 513 -42 2066 105 37 3 chr6 180435837 180436133 -8843421 + AluSq SINE Alu 1 306 -7 244 276 26 52 chr6 180436133 180436175 -8843379 + MLT1H1 LTR MaLR 513 555 0 225 108 0 0 chr6 180436455 180436492 -8843062 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 437 277 44 82 chr6 180436528 180436659 -8842895 + L1MC4a LINE L1 5558 5693 -2115 1801 188 44 27 chr6 180436659 180437026 -8842528 + MLT1A2 LTR MaLR 1 373 -1 437 277 44 82 chr6 180437026 180437284 -8842270 + L1MC4a LINE L1 5693 5932 -1876 2189 110 3 3 chr6 180437949 180438241 -8841313 + AluSx SINE Alu 5 296 -16 2399 71 0 13 chr6 180439733 180440044 -8839510 - AluY SINE Alu -4 307 1 2223 130 0 0 chr6 180440047 180440348 -8839206 - AluSx SINE Alu -11 301 1 1995 245 124 41 chr6 180441682 180442462 -8837092 + L1ME1 LINE L1 5317 6161 -5 6441 132 66 27 chr6 180442851 180443044 -8836510 - Tigger3b DNA MER2_type -1799 1229 1045 1990 150 7 0 chr6 180443044 180443344 -8836210 + AluSx SINE Alu 1 302 -10 6441 132 66 27 chr6 180443344 180443451 -8836103 - Tigger3b DNA MER2_type -1983 1045 944 2279 71 20 17 chr6 180443451 180443747 -8835807 + AluSc SINE Alu 1 297 -12 6441 132 66 27 chr6 180443747 180444615 -8834939 - Tigger3b DNA MER2_type -2084 944 15 211 302 0 0 chr6 180445419 180445472 -8834082 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 1639 143 8 0 chr6 180446144 180446389 -8833165 + AluSx SINE Alu 1 247 -65 23 0 0 0 chr6 180446392 180446415 -8833139 + AT_rich Low_complexity Low_complexity 1 23 0 358 287 52 0 chr6 180446624 180446739 -8832815 - L1MC4 LINE L1 -148 7894 7774 689 276 10 5 chr6 180446948 180447147 -8832407 + MIR SINE MIR 45 244 -18 280 336 0 39 chr6 180447366 180447470 -8832084 + L2 LINE L2 3173 3272 0 2147 115 0 0 chr6 180448232 180448527 -8831027 + AluY SINE Alu 1 295 -16 573 308 41 0 chr6 180448812 180448984 -8830570 - MIR SINE MIR -14 248 70 310 311 61 8 chr6 180449332 180449464 -8830090 + L2 LINE L2 3134 3272 0 696 120 10 0 chr6 180450630 180450730 -8828824 + AluSp/q SINE Alu 196 296 -17 1343 232 82 9 chr6 180450892 180451232 -8828322 + MLT1A1 LTR MaLR 1 365 0 475 271 39 39 chr6 180451566 180451747 -8827807 - MIR SINE MIR -27 235 55 2341 181 25 71 chr6 180451857 180452460 -8827094 + L1MB5 LINE L1 5589 6163 -11 2065 129 37 0 chr6 180452460 180452755 -8826799 - AluSx SINE Alu -6 306 1 259 304 67 44 chr6 180453027 180453162 -8826392 + MIR3 SINE MIR 24 161 -47 21 36 0 0 chr6 180453192 180453220 -8826334 + AT_rich Low_complexity Low_complexity 1 28 0 1485 209 93 41 chr6 180453551 180454015 -8825539 + MLT1D LTR MaLR 1 488 -17 1958 116 0 8 chr6 180454096 180454355 -8825199 + AluSx SINE Alu 1 257 -55 552 179 66 0 chr6 180454447 180454553 -8825001 + MSTD LTR MaLR 284 396 0 32 43 0 0 chr6 180455044 180455090 -8824464 + AT_rich Low_complexity Low_complexity 1 46 0 25 65 0 0 chr6 180455255 180455301 -8824253 + AT_rich Low_complexity Low_complexity 1 46 0 746 221 90 58 chr6 180455805 180455940 -8823614 - Charlie1b DNA MER1_type -2238 523 394 2185 123 3 0 chr6 180455940 180456242 -8823312 + AluSx SINE Alu 1 303 -9 746 221 90 58 chr6 180456242 180456563 -8822991 - Charlie1b DNA MER1_type -2367 394 11 242 293 0 0 chr6 180456600 180456658 -8822896 - Charlie1b DNA MER1_type -455 68 11 242 293 0 0 chr6 180456695 180456753 -8822801 - Charlie1b DNA MER1_type -455 68 11 291 259 0 0 chr6 180456790 180456848 -8822706 - Charlie1b DNA MER1_type -455 68 11 1925 167 18 42 chr6 180456930 180457314 -8822240 + THE1C LTR MaLR 1 375 0 511 242 66 48 chr6 180457799 180458026 -8821528 + MER31-int LTR ERV1 2792 3022 -1914 6770 142 37 30 chr6 180458066 180458224 -8821330 + HSMAR2 DNA Mariner 2 157 -1145 1926 162 3 3 chr6 180458224 180458526 -8821028 + AluJb SINE Alu 11 312 0 6770 142 37 30 chr6 180458526 180459152 -8820402 + HSMAR2 DNA Mariner 157 777 -525 2187 107 3 3 chr6 180459152 180459451 -8820103 - AluY SINE Alu -12 299 1 6770 142 37 30 chr6 180459451 180459718 -8819836 + HSMAR2 DNA Mariner 777 1067 -235 2259 129 0 0 chr6 180459718 180460028 -8819526 - AluSx SINE Alu -2 310 1 6770 142 37 30 chr6 180460028 180460259 -8819295 + HSMAR2 DNA Mariner 1067 1295 -7 575 252 45 59 chr6 180460619 180460976 -8818578 + MER31-int LTR ERV1 3397 3748 -1188 308 277 112 64 chr6 180461103 180461370 -8818184 + MER31-int LTR ERV1 3818 4097 -839 688 213 87 25 chr6 180461689 180461966 -8817588 + LTR37A LTR ERV1 133 426 0 2181 127 0 3 chr6 180462078 180462386 -8817168 + AluSx SINE Alu 1 307 -5 2228 135 0 0 chr6 180462393 180462697 -8816857 + AluSq SINE Alu 2 305 -8 34 55 0 0 chr6 180462745 180462800 -8816754 + AT_rich Low_complexity Low_complexity 1 55 0 2181 108 10 0 chr6 180462842 180463138 -8816416 - AluSp SINE Alu -14 299 1 237 132 0 0 chr6 180463224 180463262 -8816292 + (A)n Simple_repeat Simple_repeat 1 38 0 3682 127 75 44 chr6 180464005 180464756 -8814798 + LTR1 LTR ERV1 12 785 0 2354 102 7 0 chr6 180465193 180465498 -8814056 + AluSx SINE Alu 1 307 -5 22 35 0 0 chr6 180468867 180468896 -8810658 + AT_rich Low_complexity Low_complexity 1 29 0 261 0 0 0 chr6 180469329 180469358 -8810196 + (CA)n Simple_repeat Simple_repeat 1 29 0 * 333 0 0 0 chr6 180469357 180469394 -8810160 + (TC)n Simple_repeat Simple_repeat 1 37 0 263 295 75 12 chr6 180469626 180469799 -8809755 + L1ME LINE L1 5631 5814 -307 367 313 6 22 chr6 180469947 180470129 -8809425 + (TA)n Simple_repeat Simple_repeat 2 180 0 2380 100 0 3 chr6 180470917 180471227 -8808327 - AluSx SINE Alu -1 311 3 393 345 79 81 chr6 180471292 180471712 -8807842 - L2 LINE L2 -2 3270 2852 191 354 31 50 chr6 180472104 180472172 -8807382 + L2 LINE L2 2678 2746 -568 2201 81 3 0 chr6 180472172 180472476 -8807078 + AluSx SINE Alu 1 305 0 191 354 31 50 chr6 180472476 180472567 -8806987 + L2 LINE L2 2746 2835 -479 243 266 129 65 chr6 180472932 180473056 -8806498 - L2 LINE L2 -338 2976 2845 2101 111 3 3 chr6 180473205 180473494 -8806060 + AluSx SINE Alu 1 289 -23 200 316 82 39 chr6 180473712 180473918 -8805636 - L2 LINE L2 -234 3079 2865 22 0 0 0 chr6 180473946 180473968 -8805586 + AT_rich Low_complexity Low_complexity 1 22 0 2134 118 13 19 chr6 180474576 180474890 -8804664 + AluSx SINE Alu 1 312 0 1871 161 7 3 chr6 180475278 180475569 -8803985 + AluSx SINE Alu 1 292 -20 189 0 0 0 chr6 180476053 180476074 -8803480 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1991 129 7 0 chr6 180476074 180476352 -8803202 - AluSx SINE Alu -32 280 1 23 0 0 0 chr6 180476353 180476376 -8803178 + AT_rich Low_complexity Low_complexity 1 23 0 371 317 50 50 chr6 180476828 180477027 -8802527 + MIR SINE MIR 19 217 -45 818 209 48 9 chr6 180478079 180478289 -8801265 - MER20 DNA MER1_type 0 219 2 2300 111 3 0 chr6 180478511 180478818 -8800736 + AluSq SINE Alu 1 308 -5 291 290 32 0 chr6 180479101 180479194 -8800360 - MIR SINE MIR -149 113 18 253 277 82 77 chr6 180480147 180480326 -8799228 - MIR SINE MIR -39 223 44 2203 119 0 3 chr6 180480326 180480665 -8798889 - AluSc SINE Alu 0 309 1 253 277 82 77 chr6 180480665 180480709 -8798845 - MIR SINE MIR -218 44 2 25 0 0 0 chr6 180481444 180481469 -8798085 + AT_rich Low_complexity Low_complexity 1 25 0 2200 133 0 9 chr6 180481539 180481855 -8797699 + AluSq SINE Alu 1 313 0 319 230 333 18 chr6 180483102 180483267 -8796287 - MIR SINE MIR -38 224 8 204 241 35 35 chr6 180484664 180484722 -8794832 + L2 LINE L2 3251 3308 -5 2319 92 14 0 chr6 180485483 180485777 -8793777 - AluSg SINE Alu -12 298 1 2009 110 7 24 chr6 180485805 180486097 -8793457 + AluSq SINE Alu 1 287 -26 212 0 36 0 chr6 180486100 180486128 -8793426 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4666 128 19 28 chr6 180488450 180489236 -8790318 - MER4E LTR ERV1 0 779 1 2270 89 0 0 chr6 180489768 180490072 -8789482 - AluSg SINE Alu 0 304 1 256 345 43 17 chr6 180490353 180490469 -8789085 - MIR3 SINE MIR -21 187 69 2971 146 23 40 chr6 180490582 180490968 -8788586 - LTR59 LTR ERV1 -6 591 217 2049 102 0 58 chr6 180490968 180491281 -8788273 - AluSx SINE Alu -17 295 1 2971 146 23 40 chr6 180491281 180491495 -8788059 - LTR59 LTR ERV1 -380 217 1 23 0 0 0 chr6 180491708 180491731 -8787823 + AT_rich Low_complexity Low_complexity 1 23 0 264 264 33 0 chr6 180492063 180492154 -8787400 + L1ME LINE L1 5562 5655 -466 535 190 68 31 chr6 180492274 180492437 -8787117 + MER61A LTR ERV1 1 169 -174 1006 179 16 0 chr6 180492444 180492634 -8786920 - MER72 LTR ERV1 -529 193 1 892 146 6 19 chr6 180492750 180492908 -8786646 + MER61A LTR ERV1 188 343 0 2007 140 10 0 chr6 180492984 180493276 -8786278 - AluJb SINE Alu -10 302 8 213 39 0 0 chr6 180493342 180493368 -8786186 + (TA)n Simple_repeat Simple_repeat 1 26 0 2252 114 0 0 chr6 180493483 180493780 -8785774 - AluSq SINE Alu -16 297 1 194 356 107 60 chr6 180494750 180494934 -8784620 - L3b LINE CR1 -6 1577 1378 2357 76 3 3 chr6 180494934 180495235 -8784319 + AluSp SINE Alu 1 301 -12 194 356 107 60 chr6 180495235 180495283 -8784271 - L3b LINE CR1 -205 1378 1334 1255 88 0 6 chr6 180495692 180495852 -8783702 + AluSx SINE Alu 1 159 -153 9406 198 64 29 chr6 180496415 180497452 -8782102 - L1 LINE L1 -1330 5878 4879 2309 159 48 7 chr6 180497452 180497867 -8781687 + MSTB1 LTR MaLR 1 432 0 9406 198 64 29 chr6 180497867 180499169 -8780385 - L1 LINE L1 -2329 4879 3624 1909 153 3 10 chr6 180499169 180499477 -8780077 - AluSg SINE Alu -4 306 1 9406 198 64 29 chr6 180499477 180499660 -8779894 - L1 LINE L1 -3584 3624 3449 1988 123 3 3 chr6 180499660 180499975 -8779579 - AluSq SINE Alu 0 315 1 9406 198 64 29 chr6 180499975 180502257 -8777297 - L1 LINE L1 -3759 3449 799 1020 33 33 0 chr6 180502467 180502588 -8776966 + L1PA4 LINE L1 6029 6153 -2 22 35 0 0 chr6 180502907 180502936 -8776618 + AT_rich Low_complexity Low_complexity 1 29 0 1870 113 39 3 chr6 180502998 180503317 -8776237 - AluSx SINE Alu 0 312 1 21 0 0 0 chr6 180503335 180503356 -8776198 + AT_rich Low_complexity Low_complexity 1 21 0 1422 210 92 16 chr6 180503814 180504128 -8775426 - MER2 DNA MER2_type -3 341 4 2043 173 25 32 chr6 180505104 180505504 -8774050 - MER66B LTR ERV1 0 486 90 241 277 0 0 chr6 180505499 180505564 -8773990 + MER66B LTR ERV1 34 98 -388 * 2047 122 21 0 chr6 180506989 180507277 -8772277 + AluSx SINE Alu 11 304 -8 311 201 75 82 chr6 180507284 180507418 -8772136 - MLT1K LTR MaLR -104 484 352 210 37 0 0 chr6 180507600 180507627 -8771927 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 8121 14 0 0 chr6 180507627 180509299 -8770255 - L1HS LINE L1 -16 6139 4468 832 183 0 0 chr6 180510001 180510132 -8769422 - FLAM_A SINE Alu -2 131 1 470 271 102 10 chr6 180510790 180511110 -8768444 + LTR33A LTR ERVL 130 515 -8 1951 155 0 3 chr6 180511959 180512255 -8767299 + AluSx SINE Alu 3 297 -15 2052 122 3 7 chr6 180513181 180513525 -8766029 + AluSp SINE Alu 1 343 0 1991 227 36 60 chr6 180513556 180513682 -8765872 + LTR40a LTR ERVL 1 129 -390 2464 70 3 10 chr6 180513682 180513995 -8765559 + AluY SINE Alu 1 311 0 1991 227 36 60 chr6 180513995 180514400 -8765154 + LTR40a LTR ERVL 129 519 0 2168 122 3 0 chr6 180515324 180515620 -8763934 + AluSx SINE Alu 1 297 -15 598 200 60 76 chr6 180515766 180515951 -8763603 + MER5A DNA MER1_type 5 186 -3 2237 77 25 0 chr6 180516160 180516446 -8763108 + AluY SINE Alu 14 306 -5 826 225 24 38 chr6 180516523 180516732 -8762822 + MER58A DNA MER1_type 17 222 -2 1762 100 4 52 chr6 180517275 180517544 -8762010 - AluSx SINE Alu -56 256 1 185 272 128 64 chr6 180517656 180517781 -8761773 + MIR SINE MIR 19 151 -57 368 75 112 6 chr6 180518015 180518176 -8761378 + (TA)n Simple_repeat Simple_repeat 2 179 0 25 0 0 0 chr6 180518176 180518201 -8761353 + AT_rich Low_complexity Low_complexity 1 25 0 414 93 86 6 chr6 180518207 180518369 -8761185 + (TA)n Simple_repeat Simple_repeat 2 176 0 2051 146 0 0 chr6 180518623 180518918 -8760636 - AluSx SINE Alu -17 295 1 2298 104 0 0 chr6 180519300 180519599 -8759955 - AluSg SINE Alu -11 299 1 266 248 46 83 chr6 180520196 180520305 -8759249 - LTR33 LTR ERVL -413 108 4 437 314 122 32 chr6 180521614 180522130 -8757424 - L2 LINE L2 -30 3283 2708 230 274 119 0 chr6 180522346 180522430 -8757124 - L2 LINE L2 -2 3270 3177 1515 225 57 75 chr6 180524125 180524694 -8754860 - L1ME LINE L1 -441 5725 5148 1421 192 30 36 chr6 180524694 180524996 -8754558 - AluJo SINE Alu -12 300 1 1515 225 57 75 chr6 180524996 180525141 -8754413 - L1ME LINE L1 -1018 5148 5002 2291 94 3 7 chr6 180525141 180525460 -8754094 - AluSx SINE Alu 0 312 1 1515 225 57 75 chr6 180525460 180525736 -8753818 - L1ME LINE L1 -1164 5002 4744 638 251 62 9 chr6 180525883 180526110 -8753444 - L1ME LINE L1 -1377 4769 4531 376 302 8 39 chr6 180526110 180526239 -8753315 + L2 LINE L2 2952 3076 -196 2182 190 46 0 chr6 180526716 180527089 -8752465 - MLT1B LTR MaLR 0 390 1 22 70 0 0 chr6 180527128 180527171 -8752383 + AT_rich Low_complexity Low_complexity 1 43 0 1768 167 4 4 chr6 180527961 180528273 -8751281 + AluJo SINE Alu 1 312 0 874 251 38 51 chr6 180528476 180528846 -8750708 - L1MC4 LINE L1 0 8042 7678 22 35 0 0 chr6 180528846 180528875 -8750679 + AT_rich Low_complexity Low_complexity 1 29 0 1470 197 44 82 chr6 180529181 180529658 -8749896 + MLT1C LTR MaLR 4 462 -5 390 278 0 0 chr6 180529678 180529858 -8749696 + (TG)n Simple_repeat Simple_repeat 1 180 0 254 148 33 16 chr6 180531620 180531681 -8747873 + MER4-int LTR ERV1 1111 1172 -5426 197 290 0 32 chr6 180532125 180532187 -8747367 + MIR SINE MIR 81 140 -122 217 297 72 45 chr6 180533265 180533376 -8746178 - L2 LINE L2 -20 3293 3180 1491 236 102 22 chr6 180533735 180534232 -8745322 - MER34 LTR ERV1 0 542 13 249 266 63 76 chr6 180534373 180534610 -8744944 - L2 LINE L2 -174 3139 2906 223 169 56 22 chr6 180534626 180534715 -8744839 + (TG)n Simple_repeat Simple_repeat 2 93 0 439 301 37 24 chr6 180534724 180534970 -8744584 - L2 LINE L2 -401 2913 2665 356 321 74 28 chr6 180535638 180535853 -8743701 + L2 LINE L2 2172 2396 -918 239 290 50 0 chr6 180536085 180536185 -8743369 - L2 LINE L2 0 3313 3209 180 349 12 0 chr6 180536200 180536283 -8743271 + MIR SINE MIR 170 253 -9 610 313 94 8 chr6 180536878 180537337 -8742217 + L2 LINE L2 2556 3060 -253 656 284 49 0 chr6 180537913 180538096 -8741458 - MER58A DNA MER1_type 0 224 33 2167 103 0 0 chr6 180538869 180539192 -8740362 - AluY SINE Alu 0 323 1 1921 139 6 49 chr6 180539548 180539872 -8739682 + AluSx SINE Alu 3 312 0 27 0 0 0 chr6 180541122 180541149 -8738405 + AT_rich Low_complexity Low_complexity 1 27 0 226 233 14 68 chr6 180541450 180541523 -8738031 + L2 LINE L2 3237 3305 -8 2137 126 7 3 chr6 180541580 180541890 -8737664 + AluSx SINE Alu 1 311 -1 2465 69 0 0 chr6 180541930 180542221 -8737333 + AluY SINE Alu 1 291 -20 208 330 131 54 chr6 180543398 180543619 -8735935 + L2 LINE L2 3035 3272 0 2214 210 116 10 chr6 180544837 180545327 -8734227 - MLT1F LTR MaLR 0 542 1 2269 156 14 6 chr6 180546322 180546682 -8732872 - MLT1A1 LTR MaLR -2 363 1 2234 85 20 0 chr6 180549154 180549449 -8730105 - AluY SINE Alu -10 301 1 28 48 0 0 chr6 180550683 180550725 -8728829 + AT_rich Low_complexity Low_complexity 1 42 0 216 271 0 0 chr6 180550907 180550955 -8728599 - L2 LINE L2 -217 3055 3008 3839 201 74 14 chr6 180551416 180552560 -8726994 - L1MB5 LINE L1 -1 6173 4958 930 246 120 11 chr6 180552588 180553055 -8726499 - Charlie7 DNA MER1_type -274 2338 1821 477 282 64 11 chr6 180553215 180553403 -8726151 - L1MC5 LINE L1 -1153 6808 6611 27 0 0 0 chr6 180553748 180553775 -8725779 + AT_rich Low_complexity Low_complexity 1 27 0 2312 96 0 0 chr6 180553775 180554068 -8725486 - AluSx SINE Alu -19 293 1 666 289 69 46 chr6 180554333 180554898 -8724656 - L1MC5 LINE L1 -1877 5931 5354 1373 292 182 34 chr6 180554898 180556419 -8723135 - Charlie7 DNA MER1_type -835 1777 31 345 311 8 0 chr6 180556434 180556553 -8723001 + MIR SINE MIR 40 158 -50 1950 143 7 0 chr6 180556939 180557218 -8722336 + AluSx SINE Alu 3 283 -29 464 88 53 35 chr6 180557339 180557510 -8722044 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 426 57 113 0 chr6 180557498 180557657 -8721897 + (TA)n Simple_repeat Simple_repeat 2 178 0 * 284 145 43 0 chr6 180557657 180557726 -8721828 + (TTATA)n Simple_repeat Simple_repeat 5 76 0 543 48 98 12 chr6 180557726 180558055 -8721499 + (TA)n Simple_repeat Simple_repeat 1 357 0 25 0 0 0 chr6 180558261 180558286 -8721268 + AT_rich Low_complexity Low_complexity 1 25 0 201 215 31 0 chr6 180558440 180558505 -8721049 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 417 273 0 8 chr6 180558719 180558840 -8720714 - L1MC4 LINE L1 -5 8037 7918 3323 238 123 23 chr6 180558960 180560716 -8718838 - L1MC4 LINE L1 -113 7929 5944 1060 221 252 13 chr6 180560725 180561268 -8718286 + MER76 LTR ERV 15 687 -1 458 236 111 29 chr6 180561284 180561492 -8718062 - L1MC4 LINE L1 -1872 5936 5712 23 0 0 0 chr6 180562663 180562686 -8716868 + AT_rich Low_complexity Low_complexity 1 23 0 373 318 55 55 chr6 180563734 180563970 -8715584 + MIR SINE MIR 14 249 -13 2479 78 0 0 chr6 180564543 180564849 -8714705 - AluY SINE Alu -5 306 1 2337 97 3 0 chr6 180566261 180566560 -8712994 + AluSq SINE Alu 1 300 -13 255 114 0 0 chr6 180566856 180566900 -8712654 + (A)n Simple_repeat Simple_repeat 1 44 0 2347 104 0 0 chr6 180567346 180567645 -8711909 + AluSg SINE Alu 1 299 -11 441 72 52 10 chr6 180567646 180567743 -8711811 + (TA)n Simple_repeat Simple_repeat 2 102 0 31 0 0 0 chr6 180567942 180567973 -8711581 + AT_rich Low_complexity Low_complexity 1 31 0 4880 159 35 29 chr6 180568187 180569532 -8710022 - L1PA16 LINE L1 -1 6165 4815 3920 128 62 70 chr6 180569532 180570323 -8709231 - LTR1 LTR ERV1 0 785 1 4880 159 35 29 chr6 180570323 180570650 -8708904 - L1PA16 LINE L1 -1351 4815 4492 195 42 0 0 chr6 180570659 180570683 -8708871 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 2137 135 10 0 chr6 180570690 180570993 -8708561 - AluSx SINE Alu -6 306 1 353 214 0 39 chr6 180571052 180571155 -8708399 - L1 LINE L1 -1677 4469 4371 22 80 0 0 chr6 180571421 180571471 -8708083 + AT_rich Low_complexity Low_complexity 1 50 0 2376 49 42 0 chr6 180571511 180571799 -8707755 - AluY SINE Alu -11 300 1 27 29 0 0 chr6 180571801 180571835 -8707719 + AT_rich Low_complexity Low_complexity 1 34 0 2281 92 20 13 chr6 180572080 180572386 -8707168 - AluSx SINE Alu -2 310 3 539 274 86 43 chr6 180573393 180573627 -8705927 - MIR SINE MIR -10 252 9 300 349 45 61 chr6 180574058 180574322 -8705232 + L2 LINE L2 3004 3263 -9 310 237 0 40 chr6 180574325 180574401 -8705153 + GA-rich Low_complexity Low_complexity 4 76 0 1415 199 35 39 chr6 180576353 180576639 -8702915 - AluJo SINE Alu -27 285 1 1911 163 19 0 chr6 180578022 180578329 -8701225 - AluSq SINE Alu 0 313 1 25 51 0 0 chr6 180578755 180578794 -8700760 + AT_rich Low_complexity Low_complexity 1 39 0 208 259 143 27 chr6 180579069 180579181 -8700373 - MIR SINE MIR -57 205 81 243 88 0 0 chr6 180580659 180580693 -8698861 + (TA)n Simple_repeat Simple_repeat 1 34 0 * 288 0 0 0 chr6 180580692 180580724 -8698830 + (GA)n Simple_repeat Simple_repeat 2 33 0 327 266 65 65 chr6 180580725 180580894 -8698660 - MIR SINE MIR -24 238 70 2161 152 19 94 chr6 180581417 180581884 -8697670 - MSTB1 LTR MaLR 0 432 1 330 277 92 99 chr6 180582105 180582544 -8697010 + L1ME4a LINE L1 4695 5135 -1011 2432 38 0 0 chr6 180582544 180582857 -8696697 + AluY SINE Alu 1 311 0 330 277 92 99 chr6 180582857 180582889 -8696665 + L1ME4a LINE L1 5135 5166 -980 2124 106 0 3 chr6 180582889 180583182 -8696372 - AluSq SINE Alu -21 292 1 330 277 92 99 chr6 180583182 180583293 -8696261 + L1ME4a LINE L1 5166 5274 -872 239 265 68 0 chr6 180583400 180583536 -8696018 + L1ME4a LINE L1 5371 5516 -650 269 286 11 11 chr6 180583935 180584026 -8695528 + L1ME4a LINE L1 5937 6027 -94 2463 83 0 0 chr6 180584046 180584346 -8695208 - AluSc SINE Alu -9 300 1 311 354 93 8 chr6 180584886 180585123 -8694431 - MIR SINE MIR -1 261 5 2408 57 0 7 chr6 180585374 180585673 -8693881 + AluY SINE Alu 1 297 -14 2081 164 33 28 chr6 180585801 180586227 -8693327 + MSTB1 LTR MaLR 1 428 -4 404 278 66 116 chr6 180586388 180586906 -8692648 - MLT1G1 LTR MaLR -4 591 100 2080 96 6 48 chr6 180586908 180587220 -8692334 - AluSq SINE Alu -14 299 1 1943 131 0 0 chr6 180587439 180587706 -8691848 + AluSx SINE Alu 36 302 -10 1540 187 32 21 chr6 180588807 180589091 -8690463 - AluJb SINE Alu -25 287 1 2605 102 0 0 chr6 180589434 180589786 -8689768 - THE1A LTR MaLR -3 352 1 187 379 145 11 chr6 180590836 180591187 -8688367 + L2 LINE L2 2874 3271 -1 1770 74 0 0 chr6 180593635 180593850 -8685704 - AluSg SINE Alu -95 215 1 384 303 15 0 chr6 180594555 180594750 -8684804 + L1MB7 LINE L1 3364 3561 -2585 3429 210 51 17 chr6 180594756 180596026 -8683528 + L1MB7 LINE L1 4856 6179 -5 240 122 0 0 chr6 180596099 180596140 -8683414 + (TG)n Simple_repeat Simple_repeat 2 42 0 1734 174 3 13 chr6 180597709 180598008 -8681546 + AluJb SINE Alu 1 296 -16 1988 104 29 16 chr6 180598032 180598340 -8681214 + AluSx SINE Alu 1 312 0 249 357 45 0 chr6 180599759 180599871 -8679683 + L2 LINE L2 3155 3271 -1 1624 180 20 0 chr6 180600166 180600460 -8679094 + AluJo SINE Alu 1 300 -12 189 0 0 0 chr6 180600461 180600482 -8679072 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 200 35 35 0 chr6 180600916 180600945 -8678609 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 183 240 156 21 chr6 180601004 180601100 -8678454 - L2 LINE L2 -184 3129 3021 22 35 0 0 chr6 180601441 180601470 -8678084 + AT_rich Low_complexity Low_complexity 1 29 0 398 290 53 35 chr6 180601705 180601874 -8677680 + MIR SINE MIR 18 189 -73 2253 136 25 33 chr6 180602433 180602800 -8676754 + THE1B LTR MaLR 1 364 0 2278 83 0 49 chr6 180602808 180603134 -8676420 - AluSg SINE Alu 0 310 1 301 337 79 11 chr6 180603265 180603443 -8676111 - MIR SINE MIR -20 242 53 556 265 141 37 chr6 180603617 180604108 -8675446 - Charlie7 DNA MER1_type -28 2584 505 368 241 26 26 chr6 180604314 180604430 -8675124 - Charlie7 DNA MER1_type -2492 120 5 5156 166 40 35 chr6 180605605 180606404 -8673150 - L1MA8 LINE L1 -4 6287 5493 1915 142 30 0 chr6 180606404 180606700 -8672854 - AluSx SINE Alu -7 305 1 5156 166 40 35 chr6 180606700 180607345 -8672209 - L1MA8 LINE L1 -798 5493 4829 2392 50 3 17 chr6 180607345 180607642 -8671912 + AluY SINE Alu 1 293 -18 5156 166 40 35 chr6 180607642 180607771 -8671783 - L1MA8 LINE L1 -1462 4829 4702 841 213 84 28 chr6 180607783 180607988 -8671566 - L1MC4 LINE L1 -157 7885 7662 2058 97 17 3 chr6 180607988 180608277 -8671277 - L1PA10 LINE L1 0 6168 5876 841 213 84 28 chr6 180608277 180608320 -8671234 - L1MC4 LINE L1 -380 7662 7623 2699 39 0 0 chr6 180608722 180609030 -8670524 + AluY SINE Alu 3 310 -1 253 228 51 38 chr6 180609283 180609362 -8670192 + L1M4 LINE L1 3781 3860 -2286 611 262 73 5 chr6 180610007 180610211 -8669343 + MIR SINE MIR 4 225 -37 349 343 34 17 chr6 180610508 180610686 -8668868 - MER5A DNA MER1_type 0 189 9 2081 125 7 0 chr6 180611370 180611658 -8667896 - AluSq SINE Alu -23 290 1 227 250 0 40 chr6 180611938 180612014 -8667540 + HAL1b LINE L1 771 843 -505 2249 105 0 0 chr6 180613141 180613445 -8666109 + AluSx SINE Alu 1 304 -8 197 108 27 0 chr6 180613891 180613928 -8665626 + GA-rich Low_complexity Low_complexity 3 40 0 2288 186 111 7 chr6 180614796 180615236 -8664318 - MER66B LTR ERV1 0 486 1 464 261 81 97 chr6 180615972 180616332 -8663222 + L1MC4a LINE L1 6355 6708 -1100 454 243 72 0 chr6 180616315 180616426 -8663128 + L1MC4 LINE L1 6848 6966 -1076 * 468 298 52 73 chr6 180616435 180616931 -8662623 + L1MC4 LINE L1 7103 7588 -454 2214 111 0 0 chr6 180617142 180617431 -8662123 + AluY SINE Alu 1 289 -22 192 200 0 0 chr6 180617466 180617511 -8662043 + (CA)n Simple_repeat Simple_repeat 2 46 0 1321 156 66 89 chr6 180618592 180618894 -8660660 + AluJb SINE Alu 1 295 -17 7384 23 1 0 chr6 180619674 180620531 -8659023 - L1P LINE L1 -993 5153 4296 8307 17 0 0 chr6 180620531 180621493 -8658061 + L1PA3 LINE L1 5220 6181 0 198 294 110 55 chr6 180622558 180622667 -8656887 - L2 LINE L2 -17 3255 3141 1891 143 7 0 chr6 180623774 180624047 -8655507 + AluSq SINE Alu 1 275 -38 2218 73 21 3 chr6 180624088 180624375 -8655179 + AluY SINE Alu 1 292 -19 519 223 127 35 chr6 180625323 180625520 -8654034 + LTR50 LTR ERVL 3 217 -578 1359 100 125 0 chr6 180627270 180627470 -8652084 + MER30 DNA MER1_type 6 230 0 23 33 0 0 chr6 180627821 180627851 -8651703 + AT_rich Low_complexity Low_complexity 1 30 0 36 23 0 0 chr6 180627910 180627953 -8651601 + AT_rich Low_complexity Low_complexity 1 43 0 388 300 35 31 chr6 180628781 180629068 -8650486 - L1MEd LINE L1 -3749 2380 2093 254 187 13 120 chr6 180630600 180630675 -8648879 - MER2 DNA MER2_type -278 67 1 345 70 0 0 chr6 180630679 180630722 -8648832 - 5S rRNA rRNA -78 43 1 639 301 70 50 chr6 180630742 180631341 -8648213 - L1MEd LINE L1 -5016 1103 493 185 211 18 0 chr6 180631482 180631539 -8648015 + (TA)n Simple_repeat Simple_repeat 1 58 0 225 315 34 0 chr6 180632836 180632925 -8646629 + L2 LINE L2 3201 3292 -21 2175 138 0 0 chr6 180633107 180633418 -8646136 + AluSx SINE Alu 1 311 -1 276 281 198 0 chr6 180633550 180633646 -8645908 + HAL1 LINE L1 1538 1652 -855 348 227 37 7 chr6 180634163 180634437 -8645117 + (CA)n Simple_repeat Simple_repeat 1 282 0 402 189 26 13 chr6 180634471 180634624 -8644930 + (CA)n Simple_repeat Simple_repeat 1 155 0 2066 224 78 17 chr6 180634792 180635318 -8644236 + MER68 LTR ERV1 3 560 -2 21 36 0 0 chr6 180636155 180636183 -8643371 + AT_rich Low_complexity Low_complexity 1 28 0 2224 119 3 0 chr6 180636898 180637208 -8642346 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr6 180638007 180638028 -8641526 + AT_rich Low_complexity Low_complexity 1 21 0 1074 233 158 0 chr6 180638040 180638332 -8641222 + MER58B DNA MER1_type 4 341 0 348 333 53 32 chr6 180639187 180639376 -8640178 + MIR SINE MIR 8 200 -62 1519 280 93 33 chr6 180639998 180640544 -8639010 + L1ME1 LINE L1 5447 6043 -123 2174 142 86 6 chr6 180640544 180640904 -8638650 + MLT1B LTR MaLR 2 390 0 1519 280 93 33 chr6 180640904 180641031 -8638523 + L1ME1 LINE L1 6043 6161 -5 2630 239 69 40 chr6 180641144 180641667 -8637887 + L1ME2 LINE L1 5043 5549 -615 1997 149 0 0 chr6 180641667 180641968 -8637586 - AluSx SINE Alu -11 301 1 2630 239 69 40 chr6 180641968 180642539 -8637015 + L1ME2 LINE L1 5549 6164 0 1881 179 32 156 chr6 180643152 180643707 -8635847 - MLT2B3 LTR ERVL 0 554 86 5600 60 0 0 chr6 180643707 180644360 -8635194 - L1PA6 LINE L1 -13 6141 5489 1881 179 32 156 chr6 180644360 180644437 -8635117 - MLT2B3 LTR ERVL -468 86 1 1053 203 152 79 chr6 180644544 180644913 -8634641 + MSTD LTR MaLR 1 396 0 1042 269 189 8 chr6 180644990 180645391 -8634163 + MLT1J LTR MaLR 1 474 -37 266 265 50 11 chr6 180645887 180645977 -8633577 - MIR SINE MIR -52 156 63 1363 205 112 74 chr6 180646453 180646926 -8632628 - MLT1E LTR MaLR -8 585 95 3017 68 3 0 chr6 180647202 180647556 -8631998 + THE1A LTR MaLR 1 355 0 420 295 160 21 chr6 180648514 180648695 -8630859 - MLT1G1 LTR MaLR -94 501 346 1899 152 48 45 chr6 180648695 180649031 -8630523 - MER1B DNA MER1_type 0 337 1 420 295 160 21 chr6 180649031 180649174 -8630380 - MLT1G1 LTR MaLR -249 346 132 2006 131 7 7 chr6 180649722 180650020 -8629534 - AluSx SINE Alu -14 298 1 192 333 49 0 chr6 180650149 180650230 -8629324 - L2 LINE L2 -1 3271 3187 1077 117 7 0 chr6 180650265 180650419 -8629135 + AluSg/x SINE Alu 135 289 -21 319 328 141 5 chr6 180650821 180651019 -8628535 + MIR SINE MIR 31 255 -7 1852 152 6 19 chr6 180651559 180651875 -8627679 - AluJb SINE Alu 0 312 1 6765 19 3 1 chr6 180652026 180652764 -8626790 + L1PA2 LINE L1 5414 6152 -3 2213 125 0 3 chr6 180654088 180654393 -8625161 - AluSx SINE Alu -8 304 1 1028 196 4 56 chr6 180655311 180655561 -8623993 + Tigger3(Golem) DNA MER2_type 2792 3028 -1 2166 128 0 3 chr6 180655841 180656147 -8623407 + AluSx SINE Alu 1 305 -7 31 58 0 0 chr6 180656972 180657024 -8622530 + AT_rich Low_complexity Low_complexity 1 52 0 198 389 57 19 chr6 180657520 180657836 -8621718 + L2 LINE L2 2550 2877 -437 267 332 41 56 chr6 180658299 180658495 -8621059 + MIR SINE MIR 20 212 -50 9648 128 25 12 chr6 180658525 180660177 -8619377 - Tigger1 DNA MER2_type 0 2418 746 2105 144 34 8 chr6 180660177 180660532 -8619022 + THE1B LTR MaLR 1 364 0 3430 143 11 132 chr6 180660532 180661114 -8618440 - Tigger1 DNA MER2_type -1668 750 303 1531 112 5 0 chr6 180661114 180661328 -8618226 - AluSq SINE Alu -48 265 51 3430 143 11 132 chr6 180661328 180661599 -8617955 - Tigger1 DNA MER2_type -2115 303 1 26 50 0 0 chr6 180662097 180662137 -8617417 + AT_rich Low_complexity Low_complexity 1 40 0 410 125 111 0 chr6 180662304 180662376 -8617178 - MADE1 DNA Mariner 0 80 1 306 283 127 17 chr6 180664857 180665030 -8614524 + L2 LINE L2 3117 3308 -5 24 0 0 0 chr6 180665573 180665597 -8613957 + AT_rich Low_complexity Low_complexity 1 24 0 181 200 0 0 chr6 180665608 180665638 -8613916 - L2 LINE L2 -26 3246 3217 180 77 0 0 chr6 180665977 180666003 -8613551 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1458 199 56 4 chr6 180666005 180666272 -8613282 - AluJb SINE Alu -31 281 1 1503 314 68 13 chr6 180666389 180667151 -8612403 + ERVL LTR ERVL 1924 2727 -3037 755 335 52 18 chr6 180667241 180667623 -8611931 + ERVL LTR ERVL 2839 3233 -2531 2338 307 65 30 chr6 180667937 180668685 -8610869 + ERVL LTR ERVL 3898 4719 -1045 387 0 0 0 chr6 180668685 180668728 -8610826 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 2338 307 65 30 chr6 180668728 180669369 -8610185 + ERVL LTR ERVL 4719 5336 -428 439 250 125 45 chr6 180669770 180670058 -8609496 + LTR50 LTR ERVL 7 317 -478 311 293 86 15 chr6 180670117 180670336 -8609218 + LTR33A LTR ERVL 297 501 -22 247 175 0 0 chr6 180671739 180671779 -8607775 + L2 LINE L2 3269 3308 -5 240 35 0 0 chr6 180672775 180672804 -8606750 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 405 350 69 43 chr6 180673884 180674233 -8605321 + L2 LINE L2 2914 3271 -1 1770 180 28 11 chr6 180674597 180674952 -8604602 + MLT1A1 LTR MaLR 1 361 -4 23 78 0 0 chr6 180675600 180675651 -8603903 + AT_rich Low_complexity Low_complexity 1 51 0 23 68 0 0 chr6 180675709 180675753 -8603801 + AT_rich Low_complexity Low_complexity 1 44 0 354 337 124 0 chr6 180676699 180676877 -8602677 + MIR SINE MIR 50 249 -13 188 250 0 0 chr6 180678267 180678315 -8601239 + L2 LINE L2 3261 3308 -5 215 347 56 14 chr6 180678375 180678519 -8601035 + MIR SINE MIR 41 190 -72 1617 314 106 21 chr6 180678733 180679776 -8599778 - L2 LINE L2 -175 3138 2002 204 97 0 0 chr6 180680352 180680383 -8599171 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 838 196 0 0 chr6 180681124 180681272 -8598282 - FRAM SINE Alu -31 145 1 186 150 0 0 chr6 180682060 180682100 -8597454 + (TA)n Simple_repeat Simple_repeat 2 41 0 331 324 65 29 chr6 180682471 180682641 -8596913 + MIR SINE MIR 49 224 -38 46 45 0 0 chr6 180682886 180682953 -8596601 + AT_rich Low_complexity Low_complexity 1 67 0 352 348 144 16 chr6 180683205 180683392 -8596162 + MIR SINE MIR 24 234 -28 1545 203 58 21 chr6 180683476 180683856 -8595698 - MSTD LTR MaLR 0 396 3 1492 308 99 14 chr6 180683960 180684890 -8594664 + L1MEc LINE L1 242 1250 -5146 240 28 0 0 chr6 180685838 180685874 -8593680 + Alu SINE Alu 259 294 -5 222 196 0 0 chr6 180686445 180686491 -8593063 + (TG)n Simple_repeat Simple_repeat 1 46 0 2202 64 0 7 chr6 180686815 180687096 -8592458 + AluY SINE Alu 1 279 -32 216 86 0 0 chr6 180687100 180687135 -8592419 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 943 261 0 0 chr6 180688262 180688496 -8591058 + MIR SINE MIR 8 241 -21 202 385 23 15 chr6 180688528 180688658 -8590896 + MIR SINE MIR 118 248 -14 383 244 137 15 chr6 180688690 180688821 -8590733 - MIR SINE MIR -3 259 113 645 221 107 99 chr6 180689059 180689562 -8589992 + MLT1J LTR MaLR 3 509 -2 283 273 66 82 chr6 180689674 180689857 -8589697 - L2 LINE L2 -167 3105 2926 2311 120 105 43 chr6 180691463 180692117 -8587437 - MER51A LTR ERV1 -9 625 8 311 250 48 24 chr6 180692397 180692481 -8587073 + L1MC4 LINE L1 6613 6698 -1344 1984 138 14 0 chr6 180692483 180692773 -8586781 - AluSx SINE Alu -18 294 1 1588 117 0 0 chr6 180692788 180693001 -8586553 - AluSx SINE Alu -99 213 1 2093 145 0 7 chr6 180693029 180693339 -8586215 + AluSx SINE Alu 1 308 -4 197 208 21 21 chr6 180694469 180694517 -8585037 - MIR SINE MIR -56 206 159 225 0 0 0 chr6 180694565 180694590 -8584964 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 33 25 0 0 chr6 180695161 180695201 -8584353 + AT_rich Low_complexity Low_complexity 1 40 0 1841 173 3 16 chr6 180695209 180695515 -8584039 - AluSx SINE Alu -10 302 1 641 208 81 0 chr6 180698709 180698882 -8580672 - MER112 DNA MER1_type -73 187 1 228 305 19 0 chr6 180698970 180699075 -8580479 + MER103 DNA DNA 26 132 -34 1720 184 175 138 chr6 180699075 180700059 -8579495 - LTR28 LTR ERV1 0 1020 1 204 225 0 0 chr6 180700488 180700528 -8579026 + A-rich Low_complexity Low_complexity 4 43 0 2024 156 50 31 chr6 180702223 180702762 -8576792 - MLT2A2 LTR ERVL 0 554 2 295 303 101 22 chr6 180702875 180703053 -8576501 - L1ME LINE L1 -345 5776 5585 2132 128 3 6 chr6 180704391 180704703 -8574851 - AluSx SINE Alu -1 311 1 183 301 71 9 chr6 180705022 180705135 -8574419 + L2 LINE L2 2840 2959 -313 1677 254 76 14 chr6 180705295 180705862 -8573692 + L1ME1 LINE L1 4330 4931 -1215 1359 225 23 19 chr6 180705905 180706314 -8573240 + L1ME1 LINE L1 5021 5431 -768 329 278 98 56 chr6 180706305 180706539 -8573015 + L1ME1 LINE L1 5918 6161 -5 * 1213 49 0 0 chr6 180706737 180706880 -8572674 + AluY SINE Alu 156 298 -13 3149 187 68 5 chr6 180707339 180707954 -8571600 + MER44D DNA MER2_type 2 655 -50 1154 144 0 6 chr6 180708036 180708210 -8571344 - AluSg/x SINE Alu -9 303 131 1042 168 50 6 chr6 180708224 180708403 -8571151 - MER2 DNA MER2_type -158 187 1 513 195 0 0 chr6 180708408 180708490 -8571064 + Tigger7 DNA MER2_type 2406 2487 0 2458 85 0 0 chr6 180708684 180708991 -8570563 + AluSg SINE Alu 1 307 -3 1497 149 76 10 chr6 180710177 180710466 -8569088 - AluSx SINE Alu -4 308 1 24 32 0 0 chr6 180710685 180710716 -8568838 + AT_rich Low_complexity Low_complexity 1 31 0 870 266 131 22 chr6 180710989 180711522 -8568032 + L1ME2 LINE L1 4811 5401 -745 790 220 128 57 chr6 180711646 180711721 -8567833 + L1ME2 LINE L1 5588 5656 -508 2283 119 3 0 chr6 180711721 180712032 -8567522 + AluSx SINE Alu 1 312 0 790 220 128 57 chr6 180712032 180712292 -8567262 + L1ME2 LINE L1 5656 5947 -217 1116 116 0 0 chr6 180712535 180712682 -8566872 - AluSg/x SINE Alu -31 279 133 1489 112 0 0 chr6 180713108 180713313 -8566241 + AluSx SINE Alu 1 205 -107 2000 121 0 17 chr6 180713428 180713718 -8565836 + AluSx SINE Alu 1 285 -27 183 42 0 0 chr6 180713718 180713742 -8565812 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 1952 128 18 0 chr6 180714846 180715128 -8564426 + AluSx SINE Alu 2 288 -24 354 23 0 0 chr6 180715735 180715778 -8563776 + (TG)n Simple_repeat Simple_repeat 2 44 0 262 213 0 0 chr6 180715912 180715973 -8563581 + (TGAA)n Simple_repeat Simple_repeat 1 61 0 303 282 227 25 chr6 180716034 180716197 -8563357 + MIR SINE MIR 20 215 -47 1113 198 146 45 chr6 180717623 180717956 -8561598 + MLT1A1 LTR MaLR 1 396 0 206 340 28 0 chr6 180718071 180718177 -8561377 - MIR SINE MIR -119 143 35 225 279 41 82 chr6 180718795 180718917 -8560637 - MIR SINE MIR -125 137 21 5177 124 14 1 chr6 180719182 180719953 -8559601 + L1PB1 LINE L1 5368 6148 -3 1572 156 3 84 chr6 180720280 180720601 -8558953 - AluJb SINE Alu -17 295 1 2098 119 3 20 chr6 180720692 180720994 -8558560 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr6 180721846 180721869 -8557685 + AT_rich Low_complexity Low_complexity 1 23 0 252 295 18 54 chr6 180722078 180722152 -8557402 + L1MC4a LINE L1 5654 5724 -2084 2142 121 3 10 chr6 180722152 180722466 -8557088 + AluSx SINE Alu 1 312 0 252 295 18 54 chr6 180722466 180722503 -8557051 + L1MC4a LINE L1 5724 5761 -2047 330 262 63 16 chr6 180722513 180722704 -8556850 + L1MC4a LINE L1 5868 6067 -1741 321 305 137 18 chr6 180722863 180723148 -8556406 + L1MC4a LINE L1 6279 6597 -1211 1485 229 88 111 chr6 180723298 180723593 -8555961 - L1MC5 LINE L1 -148 7813 7513 267 104 0 0 chr6 180723593 180723641 -8555913 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1536 182 14 7 chr6 180723643 180723923 -8555631 - AluJb SINE Alu -29 283 2 1485 229 88 111 chr6 180723923 180723935 -8555619 - L1MC5 LINE L1 -449 7512 7501 621 193 17 0 chr6 180723935 180724054 -8555500 - L1MB7 LINE L1 -16 6168 6048 1485 229 88 111 chr6 180724054 180724236 -8555318 - L1MC5 LINE L1 -460 7501 7316 2570 69 0 0 chr6 180724236 180724539 -8555015 + AluY SINE Alu 1 303 -8 1485 229 88 111 chr6 180724539 180724940 -8554614 - L1MC5 LINE L1 -645 7316 6951 2170 122 3 0 chr6 180724940 180725234 -8554320 + AluSq SINE Alu 1 295 -18 1485 229 88 111 chr6 180725234 180725568 -8553986 - L1MC5 LINE L1 -1010 6951 6611 356 289 84 71 chr6 180725574 180725882 -8553672 - L1MC4a LINE L1 -1212 6596 6285 309 26 0 0 chr6 180726127 180726165 -8553389 + (TG)n Simple_repeat Simple_repeat 2 39 0 317 310 31 0 chr6 180726204 180726333 -8553221 - L1MC4a LINE L1 -1923 5885 5753 828 289 137 13 chr6 180726344 180726989 -8552565 + L1MD3 LINE L1 6958 7774 -221 5243 156 53 29 chr6 180726999 180728038 -8551516 + L1MC1 LINE L1 5257 6320 -13 617 249 22 90 chr6 180728057 180728378 -8551176 + L1MC4 LINE L1 7689 7987 -55 25 31 0 0 chr6 180728381 180728413 -8551141 + AT_rich Low_complexity Low_complexity 1 32 0 1923 115 19 35 chr6 180728485 180728925 -8550629 + AluSx SINE Alu 1 435 0 4887 114 27 3 chr6 180728941 180729689 -8549865 - L1P LINE L1 -3316 2830 2065 2021 121 6 28 chr6 180729688 180729945 -8549609 + L1P LINE L1 2857 3105 -3041 * 2226 119 0 19 chr6 180729945 180730255 -8549299 + AluSx SINE Alu 1 304 -8 2021 121 6 28 chr6 180730255 180730352 -8549202 + L1P LINE L1 3105 3203 -2943 978 62 16 0 chr6 180730354 180730483 -8549071 + L1PA8 LINE L1 5782 5912 -260 2649 77 9 0 chr6 180730526 180730863 -8548691 + L1PA7 LINE L1 5815 6154 0 1861 145 42 42 chr6 180731246 180731583 -8547971 - MER1B DNA MER1_type 0 337 1 265 262 116 17 chr6 180731940 180732060 -8547494 + L1P4 LINE L1 5636 5766 -402 210 143 0 0 chr6 180732407 180732442 -8547112 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1923 118 4 0 chr6 180732983 180733237 -8546317 - AluSx SINE Alu -37 275 21 2500 90 3 0 chr6 180733648 180733960 -8545594 - AluSp SINE Alu 0 313 1 1724 168 81 9 chr6 180734269 180734602 -8544952 + MLT1B LTR MaLR 1 357 -33 225 0 0 0 chr6 180734703 180734728 -8544826 + (T)n Simple_repeat Simple_repeat 1 25 0 439 270 44 25 chr6 180735108 180735267 -8544287 + MLT1J1 LTR MaLR 1 162 -284 189 0 0 0 chr6 180735725 180735746 -8543808 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1832 157 0 17 chr6 180736722 180737015 -8542539 + AluJb SINE Alu 2 289 -23 860 243 114 50 chr6 180737703 180738020 -8541534 + MLT1E1 LTR MaLR 2 338 -316 289 231 87 29 chr6 180738047 180738151 -8541403 + MLT1E1 LTR MaLR 446 555 -99 1440 208 12 78 chr6 180738478 180738854 -8540700 - MLT1B LTR MaLR -7 383 35 1929 124 46 3 chr6 180738854 180739137 -8540417 + AluSx SINE Alu 1 295 -17 1440 208 12 78 chr6 180739137 180739169 -8540385 - MLT1B LTR MaLR -355 35 2 2220 119 0 0 chr6 180741398 180741700 -8537854 - AluSq SINE Alu -11 302 1 473 341 49 17 chr6 180743564 180743851 -8535703 + LTR16C LTR ERVL 187 482 -9 198 250 214 54 chr6 180744107 180744219 -8535335 + MIR SINE MIR 13 142 -120 234 0 0 0 chr6 180745380 180745406 -8534148 + (A)n Simple_repeat Simple_repeat 1 26 0 373 393 5 21 chr6 180746017 180746208 -8533346 + MIR3 SINE MIR 15 202 -6 183 264 28 69 chr6 180747783 180747855 -8531699 - L2 LINE L2 0 3313 3245 434 269 46 56 chr6 180748212 180748409 -8531145 + MIR SINE MIR 42 236 -26 484 315 56 47 chr6 180748772 180749004 -8530550 - MIR SINE MIR -21 241 8 548 219 165 0 chr6 180749310 180749474 -8530080 + MIR SINE MIR 40 230 -32 24 0 0 0 chr6 180750358 180750382 -8529172 + AT_rich Low_complexity Low_complexity 1 24 0 505 233 267 0 chr6 180750550 180750722 -8528832 + MIR SINE MIR 42 259 -3 256 88 0 0 chr6 180751924 180751958 -8527596 - LTR67 LTR ERVL -21 536 503 231 279 0 90 chr6 180752141 180752252 -8527302 + L2 LINE L2 3205 3305 -8 344 316 43 14 chr6 180753225 180753434 -8526120 + L1M4 LINE L1 4812 5026 -1120 21 57 0 0 chr6 180754042 180754077 -8525477 + AT_rich Low_complexity Low_complexity 1 35 0 1514 163 10 43 chr6 180755703 180756003 -8523551 - AluJo SINE Alu -22 290 1 247 252 115 29 chr6 180756372 180756511 -8523043 + L1ME3 LINE L1 5993 6143 -19 402 21 0 0 chr6 180756792 180756839 -8522715 + (TG)n Simple_repeat Simple_repeat 2 48 0 1255 96 25 0 chr6 180757069 180757266 -8522288 + L1MA1 LINE L1 6098 6299 -3 258 197 33 0 chr6 180758669 180758730 -8520824 - MIR SINE MIR -130 132 70 21 36 0 0 chr6 180759174 180759202 -8520352 + AT_rich Low_complexity Low_complexity 1 28 0 852 164 0 7 chr6 180759509 180759661 -8519893 + Tigger1 DNA MER2_type 3 153 -2265 198 342 18 45 chr6 180760463 180760574 -8518980 + MIR SINE MIR 34 141 -67 730 253 30 0 chr6 180760755 180760957 -8518597 + MER3 DNA MER1_type 2 209 0 2110 126 47 19 chr6 180761172 180761537 -8518017 + THE1C LTR MaLR 1 375 0 283 182 0 15 chr6 180763122 180763188 -8516366 - L1MC1 LINE L1 0 6333 6269 2143 174 67 5 chr6 180763388 180763791 -8515763 + MSTA LTR MaLR 1 428 0 2012 134 11 31 chr6 180764712 180765063 -8514491 + THE1B LTR MaLR 1 344 -20 430 321 119 31 chr6 180765510 180765837 -8513717 + L3 LINE CR1 1205 1560 -17 186 306 32 0 chr6 180766188 180766250 -8513304 + L3 LINE CR1 1504 1567 -10 216 215 31 77 chr6 180766318 180766351 -8513203 - L2 LINE L2 0 3272 3242 192 97 0 0 chr6 180766351 180766382 -8513172 + (TAA)n Simple_repeat Simple_repeat 2 32 0 216 215 31 77 chr6 180766382 180766413 -8513141 - L2 LINE L2 -30 3242 3211 223 394 10 0 chr6 180767291 180767390 -8512164 + MIR SINE MIR 23 122 -140 251 260 7 130 chr6 180768096 180768250 -8511304 + MLT1L LTR MaLR 143 277 -338 2230 118 0 16 chr6 180768252 180768566 -8510988 - AluSx SINE Alu -3 309 1 1248 170 0 28 chr6 180769266 180769484 -8510070 - AluJb SINE Alu -2 310 99 200 243 27 0 chr6 180771497 180771571 -8507983 + T-rich Low_complexity Low_complexity 3 78 0 258 302 0 0 chr6 180774426 180774489 -8505065 + MIR SINE MIR 59 121 -141 222 200 0 0 chr6 180775268 180775308 -8504246 + (CATA)n Simple_repeat Simple_repeat 1 40 0 192 299 172 0 chr6 180775360 180775447 -8504107 - MIR SINE MIR -30 232 131 194 206 110 41 chr6 180775626 180775699 -8503855 - MIR SINE MIR -19 243 166 453 330 6 17 chr6 180776086 180776262 -8503292 + MIR SINE MIR 41 214 -48 991 259 73 3 chr6 180777137 180777454 -8502100 - MER58B DNA MER1_type -2 339 1 439 268 45 13 chr6 180777496 180777653 -8501901 - L1ME3 LINE L1 -1 6161 6000 1131 73 0 0 chr6 180777855 180777992 -8501562 - AluY SINE Alu -174 137 1 251 146 18 0 chr6 180778333 180778388 -8501166 + GA-rich Low_complexity Low_complexity 1 56 0 330 186 10 39 chr6 180778724 180778826 -8500728 + A-rich Low_complexity Low_complexity 4 102 0 206 345 0 12 chr6 180780095 180780179 -8499375 + GA-rich Low_complexity Low_complexity 5 87 0 192 77 0 0 chr6 180781178 180781204 -8498350 + (T)n Simple_repeat Simple_repeat 1 26 0 484 311 57 44 chr6 180782039 180782185 -8497369 + LTR33 LTR ERVL 32 175 -346 216 0 0 0 chr6 180782185 180782209 -8497345 + (GA)n Simple_repeat Simple_repeat 1 24 0 484 311 57 44 chr6 180782209 180782448 -8497106 + LTR33 LTR ERVL 175 422 -99 220 328 0 8 chr6 180783597 180783722 -8495832 + (CATATA)n Simple_repeat Simple_repeat 3 126 0 199 376 12 0 chr6 180785216 180785301 -8494253 - MIR SINE MIR -89 119 34 1077 249 39 28 chr6 180785431 180785789 -8493765 - MLT1B LTR MaLR 0 390 29 256 360 120 33 chr6 180785814 180786239 -8493315 + L2 LINE L2 2169 2630 -684 1530 265 36 20 chr6 180786267 180786828 -8492726 + MLT1E3 LTR MaLR 57 620 -4 414 39 0 0 chr6 180786974 180787026 -8492528 + (CA)n Simple_repeat Simple_repeat 2 53 0 569 278 77 38 chr6 180787740 180788132 -8491422 + L1MC4a LINE L1 5894 6300 -1508 813 73 0 0 chr6 180788504 180788613 -8490941 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 210 237 21 21 chr6 180789828 180789921 -8489633 + (TA)n Simple_repeat Simple_repeat 2 94 0 333 221 77 58 chr6 180790648 180790752 -8488802 - L2 LINE L2 -9 3304 3199 254 299 6 61 chr6 180790914 180791078 -8488476 - Charlie8 DNA MER1_type -2237 180 26 2079 135 7 0 chr6 180791137 180791433 -8488121 + AluSx SINE Alu 6 303 -9 2023 100 0 15 chr6 180793196 180793467 -8486087 - AluSx SINE Alu -33 279 13 2759 104 15 0 chr6 180793719 180794122 -8485432 - L1PA12 LINE L1 0 6168 5760 428 211 150 0 chr6 180794473 180794606 -8484948 + MLT1D LTR MaLR 322 474 -31 1326 38 0 0 chr6 180794606 180794764 -8484790 + L1PA5 LINE L1 5989 6146 -8 2297 117 0 3 chr6 180798920 180799229 -8480325 - AluSc SINE Alu -1 308 1 538 234 54 78 chr6 180799744 180799806 -8479748 + MER3 DNA MER1_type 10 72 -137 186 103 0 0 chr6 180799806 180799835 -8479719 + (CA)n Simple_repeat Simple_repeat 2 30 0 538 234 54 78 chr6 180799835 180799977 -8479577 + MER3 DNA MER1_type 72 209 0 2005 110 3 13 chr6 180801159 180801459 -8478095 + AluY SINE Alu 1 297 -14 295 340 94 19 chr6 180801484 180801643 -8477911 - L3 LINE CR1 -910 667 497 5451 127 9 14 chr6 180802943 180804199 -8475355 + L1PA6 LINE L1 4918 6174 0 461 244 76 113 chr6 180804211 180804449 -8475105 + MIR SINE MIR 31 259 -3 23 0 0 0 chr6 180804675 180804698 -8474856 + AT_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr6 180805566 180805600 -8473954 + AT_rich Low_complexity Low_complexity 1 34 0 24 67 0 0 chr6 180805725 180805770 -8473784 + AT_rich Low_complexity Low_complexity 1 45 0 1682 131 8 136 chr6 180806701 180807099 -8472455 - MER7A DNA MER2_type 0 346 2 1619 181 10 33 chr6 180807510 180807814 -8471740 + AluJo SINE Alu 2 298 -14 501 17 0 0 chr6 180807865 180807923 -8471631 + (CA)n Simple_repeat Simple_repeat 1 58 0 519 242 7 13 chr6 180808474 180808623 -8470931 + MER3 DNA MER1_type 62 209 0 189 74 0 0 chr6 180808778 180808805 -8470749 + (TAGA)n Simple_repeat Simple_repeat 3 29 0 355 199 66 37 chr6 180808806 180808943 -8470611 + LTR37A LTR ERV1 296 423 -3 200 341 91 0 chr6 180809097 180809185 -8470369 + L2 LINE L2 3002 3097 -216 1984 107 14 21 chr6 180809829 180810118 -8469436 + AluSg SINE Alu 1 287 -23 2904 9 0 0 chr6 180810312 180810628 -8468926 + AluYb8 SINE Alu 1 316 -2 1924 117 0 38 chr6 180811431 180811753 -8467801 - AluSx SINE Alu 0 313 3 1681 157 3 59 chr6 180812960 180813284 -8466270 + AluJb SINE Alu 6 311 -1 554 264 14 7 chr6 180813925 180814069 -8465485 + MER2 DNA MER2_type 1 145 -200 380 184 0 0 chr6 180814072 180814148 -8465406 + L1P LINE L1 4880 4955 -1191 918 193 8 36 chr6 180814222 180814471 -8465083 + L1P LINE L1 4970 5211 -935 273 193 35 0 chr6 180814609 180814666 -8464888 - L1PA16 LINE L1 -87 6079 6021 1668 222 42 108 chr6 180816173 180816866 -8462688 + MLT1E1 LTR MaLR 7 653 -1 3669 33 0 16 chr6 180816917 180817367 -8462187 - L1PA3 LINE L1 -3 6152 5710 444 19 0 0 chr6 180817676 180817729 -8461825 + (CA)n Simple_repeat Simple_repeat 2 54 0 1608 196 34 0 chr6 180818267 180818589 -8460965 + MER7A DNA MER2_type 16 346 0 1183 190 141 70 chr6 180819032 180819459 -8460095 - MSTB2 LTR MaLR 0 457 1 180 0 0 0 chr6 180819950 180819970 -8459584 + (TA)n Simple_repeat Simple_repeat 1 20 0 24 53 0 0 chr6 180819976 180820014 -8459540 + AT_rich Low_complexity Low_complexity 1 38 0 324 0 0 0 chr6 180820127 180820163 -8459391 + (TAA)n Simple_repeat Simple_repeat 1 36 0 254 87 22 0 chr6 180820308 180820354 -8459200 + (CAGAGA)n Simple_repeat Simple_repeat 4 50 0 1608 128 0 0 chr6 180820592 180820843 -8458711 - AluSc SINE Alu 0 303 53 1219 302 158 26 chr6 180822987 180824094 -8455460 + L2 LINE L2 2057 3312 -1 248 128 0 21 chr6 180825171 180825218 -8454336 + (TCTCCC)n Simple_repeat Simple_repeat 2 47 0 866 207 65 32 chr6 180827733 180828075 -8451479 + MSTD LTR MaLR 11 396 0 949 248 94 13 chr6 180828519 180828837 -8450717 + MER2 DNA MER2_type 2 345 0 237 207 81 72 chr6 180828900 180829011 -8450543 + MIR3 SINE MIR 73 184 -24 307 200 0 29 chr6 180829519 180829589 -8449965 + MER92B LTR ERV1 1 68 -568 2075 112 17 7 chr6 180829589 180829885 -8449669 + AluSg SINE Alu 1 299 -11 195 129 0 0 chr6 180829885 180829916 -8449638 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 1069 99 23 0 chr6 180829916 180830088 -8449466 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 925 197 174 13 chr6 180830262 180830567 -8448987 + MER92B LTR ERV1 142 495 -141 1987 131 7 30 chr6 180830568 180830873 -8448681 + AluSq SINE Alu 1 298 -15 435 208 24 0 chr6 180830873 180830998 -8448556 + GA-rich Low_complexity Low_complexity 1 128 0 574 147 11 141 chr6 180831007 180831184 -8448370 + MER92B LTR ERV1 483 636 0 1351 160 34 8 chr6 180832248 180832510 -8447044 + Tigger3(Golem) DNA MER2_type 2769 3037 0 193 365 156 9 chr6 180832545 180832756 -8446798 - MIR SINE MIR -19 243 2 294 287 48 7 chr6 180833477 180833611 -8445943 - MIR SINE MIR -65 143 34 23 0 0 0 chr6 180833871 180833894 -8445660 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 180834276 180834298 -8445256 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 180834617 180834645 -8444909 + AT_rich Low_complexity Low_complexity 1 28 0 183 373 87 24 chr6 180838861 180838987 -8440567 + MIR SINE MIR 20 153 -109 702 204 25 78 chr6 180839313 180839556 -8439998 + LTR37B LTR ERV1 198 425 -43 200 29 0 59 chr6 180839556 180839590 -8439964 + (TATAA)n Simple_repeat Simple_repeat 3 34 0 702 204 25 78 chr6 180839590 180839630 -8439924 + LTR37B LTR ERV1 425 466 -2 1095 209 105 22 chr6 180840186 180840501 -8439053 + MLT1B LTR MaLR 1 341 -49 334 246 47 52 chr6 180842675 180842866 -8436688 + MER31-int LTR ERV1 3330 3519 -1417 2264 81 0 3 chr6 180842947 180843231 -8436323 - AluSc SINE Alu -16 293 11 373 250 0 17 chr6 180843309 180843425 -8436129 + MER31-int LTR ERV1 3657 3770 -1166 397 172 0 159 chr6 180843575 180843726 -8435828 + MER31-int LTR ERV1 3965 4091 -845 249 33 0 0 chr6 180843890 180843920 -8435634 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1920 135 3 10 chr6 180843927 180844231 -8435323 + AluSq SINE Alu 1 302 -11 696 271 29 84 chr6 180844735 180845259 -8434295 - L1MC5 LINE L1 -775 7186 6692 229 254 17 0 chr6 180845379 180845438 -8434116 + MER5B DNA MER1_type 17 76 -102 337 276 112 40 chr6 180845605 180846079 -8433475 - L1ME4a LINE L1 -1 6120 5613 1585 231 6 3 chr6 180846516 180846880 -8432674 + MLT1A1 LTR MaLR 1 365 0 340 222 79 87 chr6 180846965 180847091 -8432463 - L2 LINE L2 -1 3312 3188 360 0 0 0 chr6 180847343 180847383 -8432171 + (CTAAT)n Simple_repeat Simple_repeat 3 42 0 1852 168 10 3 chr6 180848241 180848539 -8431015 + AluSg SINE Alu 1 300 -10 486 0 0 0 chr6 180849141 180849195 -8430359 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 296 299 87 16 chr6 180849382 180849509 -8430045 - MIR SINE MIR -10 252 117 432 228 65 0 chr6 180849573 180849665 -8429889 - MER5A DNA MER1_type -81 108 11 220 246 0 53 chr6 180849867 180849924 -8429630 - L2 LINE L2 -11 3261 3208 607 176 0 0 chr6 180851252 180851354 -8428200 + AluS SINE Alu 1 102 -211 293 288 75 34 chr6 180851630 180851776 -8427778 + MIR SINE MIR 92 243 -19 334 248 184 25 chr6 180851860 180852142 -8427412 + L2 LINE L2 2642 2968 -346 343 317 10 10 chr6 180852300 180852401 -8427153 + L2 LINE L2 3160 3260 -12 579 262 99 0 chr6 180852655 180852827 -8426727 + MER5A DNA MER1_type 1 189 0 499 153 68 79 chr6 180854455 180854632 -8424922 - MER114 LTR ERV -470 178 4 510 217 0 0 chr6 180854962 180855068 -8424486 + Tigger7 DNA MER2_type 2382 2487 0 1987 116 124 11 chr6 180855068 180855446 -8424108 - MER34C LTR ERV1 -128 457 37 22 0 0 0 chr6 180855577 180855599 -8423955 + AT_rich Low_complexity Low_complexity 1 22 0 325 275 46 23 chr6 180855966 180856097 -8423457 + MLT1J LTR MaLR 369 502 -9 21 0 0 0 chr6 180856144 180856165 -8423389 + AT_rich Low_complexity Low_complexity 1 21 0 1486 86 0 5 chr6 180856489 180856676 -8422878 - AluSg/x SINE Alu -40 270 85 264 299 48 70 chr6 180857329 180857516 -8422038 - L3 LINE CR1 -785 792 610 2306 143 48 68 chr6 180858074 180858466 -8421088 - L1MB2 LINE L1 0 6171 5790 2188 124 3 0 chr6 180858466 180858765 -8420789 - AluSq SINE Alu -13 300 1 2306 143 48 68 chr6 180858765 180858870 -8420684 - L1MB2 LINE L1 -381 5790 5684 288 309 86 16 chr6 180859120 180859272 -8420282 - MIR SINE MIR -68 194 36 588 333 53 78 chr6 180859403 180859929 -8419625 - L3 LINE CR1 -226 1351 839 341 219 0 6 chr6 180860427 180860544 -8419010 + MER53 DNA DNA 1 189 0 2125 135 34 8 chr6 180862142 180862497 -8417057 + THE1B LTR MaLR 1 364 0 3002 172 75 95 chr6 180862876 180863706 -8415848 - L1MB3 LINE L1 0 6183 5371 264 235 37 12 chr6 180863957 180864038 -8415516 + L1ME4a LINE L1 5970 6052 -69 393 248 177 43 chr6 180864182 180864323 -8415231 + MER5B DNA MER1_type 19 178 0 369 252 84 0 chr6 180864394 180864501 -8415053 + MLT1H LTR MaLR 421 536 -13 2367 160 21 0 chr6 180864893 180865312 -8414242 - L1PB4 LINE L1 -101 6055 5628 1114 226 95 11 chr6 180865357 180865726 -8413828 + L1ME LINE L1 5272 5661 -505 5433 252 64 45 chr6 180865736 180867769 -8411785 + L1ME1 LINE L1 2850 4973 -1193 3663 22 2 16 chr6 180867769 180868216 -8411338 + L1PA2 LINE L1 5712 6152 -3 5433 252 64 45 chr6 180868216 180869429 -8410125 + L1ME1 LINE L1 4973 6161 -5 181 135 39 39 chr6 180869721 180869773 -8409781 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 216 0 0 0 chr6 180869905 180869929 -8409625 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 214 260 150 16 chr6 180872044 180872171 -8407383 - L3b LINE CR1 -166 1417 1274 2011 120 3 26 chr6 180873057 180873365 -8406189 + AluSc SINE Alu 1 301 -8 180 373 151 0 chr6 180873433 180873559 -8405995 - L2 LINE L2 -3 3269 3125 22 0 0 0 chr6 180874695 180874717 -8404837 + AT_rich Low_complexity Low_complexity 1 22 0 791 346 43 3 chr6 180874846 180875193 -8404361 - L3 LINE CR1 -4 1573 1213 574 296 49 49 chr6 180875373 180875660 -8403894 - L3 LINE CR1 -706 871 585 906 135 0 0 chr6 180876025 180876158 -8403396 + AluSq/x SINE Alu 1 133 -179 627 158 22 13 chr6 180876174 180876306 -8403248 - MSTA LTR MaLR -238 137 1 332 274 62 124 chr6 180877162 180877403 -8402151 + Charlie8 DNA MER1_type 105 1417 -1000 358 191 95 36 chr6 180877508 180877592 -8401962 - MER91B DNA MER1_type -4 186 98 348 94 38 0 chr6 180878207 180878260 -8401294 - Alu SINE Alu -3 299 245 9573 151 60 8 chr6 180878264 180879993 -8399561 + Tigger1 DNA MER2_type 1 1818 -600 1823 125 0 89 chr6 180879993 180880320 -8399234 - AluSx SINE Alu -14 298 1 871 209 0 6 chr6 180880320 180880497 -8399057 + Tigger1 DNA MER2_type 2243 2418 0 288 250 28 0 chr6 180880839 180880911 -8398643 + MER81 DNA DNA 35 108 -6 234 0 0 0 chr6 180883225 180883251 -8396303 + (TCTCCC)n Simple_repeat Simple_repeat 6 31 0 5538 71 36 54 chr6 180883255 180885149 -8394405 + SVA Other Other 38 868 -792 6830 56 17 1 chr6 180885527 180886895 -8392659 + L1PA7 LINE L1 4761 6154 0 499 324 34 6 chr6 180887380 180887556 -8391998 - MIR SINE MIR -33 229 49 246 232 54 0 chr6 180887559 180887615 -8391939 - L2 LINE L2 0 3313 3255 21 0 0 0 chr6 180887763 180887784 -8391770 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr6 180888671 180888696 -8390858 + (TG)n Simple_repeat Simple_repeat 1 25 0 350 260 107 49 chr6 180890468 180890795 -8388759 - L1M4 LINE L1 -1626 4520 4175 1147 171 134 68 chr6 180890802 180891153 -8388401 + MLT1A2 LTR MaLR 1 374 0 1605 188 0 17 chr6 180891312 180891599 -8387955 + AluJb SINE Alu 1 282 -30 383 163 104 22 chr6 180891636 180891771 -8387783 - L1M4 LINE L1 -2169 3977 3832 201 180 0 0 chr6 180891839 180891889 -8387665 + (TA)n Simple_repeat Simple_repeat 2 51 0 540 272 78 47 chr6 180891939 180892531 -8387023 - L1M4 LINE L1 -2812 3334 2725 1423 291 133 15 chr6 180892787 180893402 -8386152 + L1ME1 LINE L1 119 806 -5590 288 227 72 0 chr6 180893438 180893535 -8386019 + L1ME1 LINE L1 3083 3186 -3029 748 225 112 5 chr6 180893561 180893748 -8385806 - MER58C DNA MER1_type 0 215 9 609 256 207 29 chr6 180893749 180894163 -8385391 + L1ME1 LINE L1 3195 3534 -2681 2017 114 7 4 chr6 180894163 180894467 -8385087 + AluSx SINE Alu 1 305 0 609 256 207 29 chr6 180894467 180894645 -8384909 + L1ME1 LINE L1 3534 3894 -2321 3686 241 58 32 chr6 180894656 180895959 -8383595 + L1ME1 LINE L1 4039 5374 -841 1123 183 0 30 chr6 180895962 180896192 -8383362 + AluJo SINE Alu 84 306 -6 1806 252 72 16 chr6 180896212 180896780 -8382774 + L1ME1 LINE L1 5362 5961 -274 246 81 0 0 chr6 180896800 180896837 -8382717 + (TG)n Simple_repeat Simple_repeat 2 38 0 201 314 186 17 chr6 180898655 180898773 -8380781 + MIR SINE MIR 4 141 -121 24 0 0 0 chr6 180900077 180900101 -8379453 + AT_rich Low_complexity Low_complexity 1 24 0 204 67 0 0 chr6 180900366 180900396 -8379158 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 2705 206 59 43 chr6 180901551 180903237 -8376317 + L1MC2 LINE L1 4597 6337 -7 22 0 0 0 chr6 180903425 180903447 -8376107 + AT_rich Low_complexity Low_complexity 1 22 0 1976 148 0 0 chr6 180903755 180904058 -8375496 + AluSx SINE Alu 1 303 -9 271 339 104 9 chr6 180904339 180904454 -8375100 - MIR SINE MIR -64 144 19 23 0 0 0 chr6 180904559 180904582 -8374972 + AT_rich Low_complexity Low_complexity 1 23 0 231 140 0 0 chr6 180905057 180905107 -8374447 + (TG)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chr6 180905215 180905243 -8374311 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 180905516 180905537 -8374017 + AT_rich Low_complexity Low_complexity 1 21 0 207 207 17 0 chr6 180905564 180905622 -8373932 + (CAAA)n Simple_repeat Simple_repeat 3 61 0 1197 209 82 34 chr6 180906225 180906580 -8372974 + MLT1A2 LTR MaLR 2 373 -1 21 36 0 0 chr6 180906626 180906654 -8372900 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr6 180907490 180907522 -8372032 + AT_rich Low_complexity Low_complexity 1 32 0 2499 80 0 0 chr6 180907824 180908135 -8371419 + AluY SINE Alu 1 311 0 782 246 160 50 chr6 180908726 180909125 -8370429 + LTR40c LTR ERVL 4 446 -16 23 33 0 0 chr6 180909445 180909475 -8370079 + AT_rich Low_complexity Low_complexity 1 30 0 209 33 33 0 chr6 180909929 180909959 -8369595 + (TC)n Simple_repeat Simple_repeat 2 32 0 22 70 0 0 chr6 180910086 180910129 -8369425 + AT_rich Low_complexity Low_complexity 1 43 0 252 307 32 32 chr6 180910236 180910425 -8369129 - L1MC/D LINE L1 -1909 5899 5711 413 313 153 38 chr6 180910473 180910898 -8368656 + L2 LINE L2 2830 3303 -10 22 35 0 0 chr6 180911134 180911163 -8368391 + AT_rich Low_complexity Low_complexity 1 29 0 2102 104 23 13 chr6 180911602 180911901 -8367653 + AluSp SINE Alu 1 302 -11 440 322 123 50 chr6 180911933 180911955 -8367599 - L1ME4a LINE L1 -207 5914 5895 2519 111 5 13 chr6 180911955 180912333 -8367221 + THE1C LTR MaLR 1 375 0 440 322 123 50 chr6 180912333 180912611 -8366943 - L1ME4a LINE L1 -226 5895 5592 636 273 71 17 chr6 180916418 180916637 -8362917 + MIR SINE MIR 33 262 0 245 311 47 19 chr6 180917357 180917463 -8362091 - MIR SINE MIR -29 233 125 1325 143 8 8 chr6 180917473 180917710 -8361844 + L1PA16 LINE L1 5929 6165 -1 26 50 0 0 chr6 180917713 180917753 -8361801 + AT_rich Low_complexity Low_complexity 1 40 0 1388 201 102 24 chr6 180918747 180919121 -8360433 - MER57A LTR ERV1 0 403 1 804 274 28 16 chr6 180919121 180919369 -8360185 - MER57A-int LTR ERV1 0 7537 7287 534 200 25 0 chr6 180919380 180919500 -8360054 - LTR54B LTR ERV1 -369 129 7 366 80 0 0 chr6 180919502 180919552 -8360002 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1493 281 79 8 chr6 180919555 180920182 -8359372 - MER57A-int LTR ERV1 -504 7033 6452 245 177 16 16 chr6 180920185 180920247 -8359307 - MER57A LTR ERV1 -341 62 1 615 197 59 26 chr6 180920489 180920641 -8358913 + MER46A DNA MER2_type 73 229 -7 255 31 0 0 chr6 180920721 180920753 -8358801 + (CA)n Simple_repeat Simple_repeat 2 33 0 243 220 17 0 chr6 180920768 180920827 -8358727 + (TA)n Simple_repeat Simple_repeat 1 60 0 803 146 17 11 chr6 180921700 180921878 -8357676 + GA-rich Low_complexity Low_complexity 2 180 0 300 214 22 56 chr6 180925361 180925450 -8354104 + L1MC4 LINE L1 1983 2068 -4358 * 333 235 26 26 chr6 180925429 180925546 -8354008 + L1MC4 LINE L1 1996 6983 -1339 13609 147 30 19 chr6 180927317 180929710 -8349844 - Tigger1 DNA MER2_type 0 2418 1 289 366 18 0 chr6 180929755 180929867 -8349687 - MIR SINE MIR -92 170 57 607 213 71 5 chr6 180931126 180931323 -8348231 + L1MA8 LINE L1 6077 6286 -5 210 320 0 0 chr6 180931645 180931695 -8347859 + (TG)n Simple_repeat Simple_repeat 1 50 0 207 114 0 0 chr6 180932199 180932234 -8347320 + (A)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chr6 180932510 180932535 -8347019 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 477 0 0 0 chr6 180932534 180932587 -8346967 + (GA)n Simple_repeat Simple_repeat 2 54 0 249 310 78 17 chr6 180932888 180933004 -8346550 - L2 LINE L2 -28 3285 3163 192 40 0 0 chr6 180933986 180934011 -8345543 + (A)n Simple_repeat Simple_repeat 1 25 0 433 282 8 16 chr6 180934646 180934770 -8344784 - MIR SINE MIR -109 153 31 288 0 0 0 chr6 180935354 180935375 -8344179 + (CA)n Simple_repeat Simple_repeat 1 53 0 288 0 0 0 chr6 180935375 180935407 -8344147 + (CA)n Simple_repeat Simple_repeat 2 33 0 2058 121 3 7 chr6 180935431 180935721 -8343833 - AluSx SINE Alu -23 289 1 2288 111 0 7 chr6 180938131 180938438 -8341116 - AluSg SINE Alu -5 305 1 1462 251 72 40 chr6 180940114 180940639 -8338915 + MLT1F LTR MaLR 1 542 0 259 320 165 0 chr6 180940878 180940981 -8338573 + L2 LINE L2 3137 3256 -16 634 280 47 0 chr6 180941970 180942163 -8337391 + MLT1K LTR MaLR 186 387 -201 429 254 28 21 chr6 180942294 180942436 -8337118 + MLT1K LTR MaLR 446 588 0 1959 164 0 0 chr6 180942733 180943037 -8336517 + AluSx SINE Alu 1 304 -8 2306 109 3 0 chr6 180943362 180943666 -8335888 - AluSq SINE Alu -6 307 3 236 238 16 16 chr6 180944507 180944570 -8334984 + (CATA)n Simple_repeat Simple_repeat 4 66 0 2212 116 0 25 chr6 180944902 180945222 -8334332 + AluSx SINE Alu 1 312 0 338 250 0 28 chr6 180945337 180945445 -8334109 + HAL1b LINE L1 349 453 -895 662 262 91 97 chr6 180945728 180946295 -8333259 + L1M4 LINE L1 2670 3270 -2876 1986 162 22 3 chr6 180946295 180946653 -8332901 - MER47A DNA MER2_type 0 366 2 662 262 91 97 chr6 180946653 180946850 -8332704 + L1M4 LINE L1 3270 3467 -2679 2083 135 3 0 chr6 180946947 180947244 -8332310 + AluSx SINE Alu 2 299 -13 560 288 89 41 chr6 180947304 180947625 -8331929 + Charlie2 DNA MER1_type 65 410 -2452 1392 196 74 30 chr6 180947625 180947921 -8331633 - AluJo SINE Alu -3 309 1 560 288 89 41 chr6 180947921 180947992 -8331562 + Charlie2 DNA MER1_type 410 476 -2386 314 235 109 17 chr6 180947992 180948111 -8331443 + L2 LINE L2 2176 2305 -1009 655 277 139 50 chr6 180948162 180948621 -8330933 + L2 LINE L2 2806 3305 -8 2320 100 3 3 chr6 180949068 180949377 -8330177 + AluSg SINE Alu 1 309 -1 2146 88 4 0 chr6 180949556 180949830 -8329724 - AluSq SINE Alu -38 275 1 1173 185 78 101 chr6 180950501 180950896 -8328658 + MLT1B LTR MaLR 1 386 -4 551 320 31 12 chr6 180951073 180951329 -8328225 - MIR SINE MIR 0 262 2 238 309 55 9 chr6 180951829 180951939 -8327615 - MER5B DNA MER1_type -60 118 4 588 219 62 95 chr6 180952737 180953126 -8326428 + LTR37B LTR ERV1 6 381 -87 189 250 0 27 chr6 180953867 180953979 -8325575 + C-rich Low_complexity Low_complexity 1 109 0 1739 180 27 0 chr6 180954133 180954433 -8325121 - AluJo SINE Alu -2 310 3 368 105 0 0 chr6 180954500 180954557 -8324997 - MER116 DNA Mariner -3 77 21 21 0 0 0 chr6 180956523 180956544 -8323010 + AT_rich Low_complexity Low_complexity 1 21 0 2087 136 0 3 chr6 180958878 180959179 -8320375 + AluSx SINE Alu 1 300 -12 2202 90 3 17 chr6 180959405 180959706 -8319848 + AluY SINE Alu 2 298 -13 205 378 0 0 chr6 180959807 180959881 -8319673 + L3 LINE CR1 1383 1456 -121 1969 121 14 0 chr6 180960517 180960799 -8318755 + AluSc SINE Alu 1 286 -23 21 0 0 0 chr6 180961198 180961219 -8318335 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr6 180961846 180961882 -8317672 + AT_rich Low_complexity Low_complexity 1 36 0 2772 181 45 5 chr6 180962912 180963492 -8316062 + L1MB8 LINE L1 5567 6169 -9 390 42 0 0 chr6 180963592 180963640 -8315914 + (TG)n Simple_repeat Simple_repeat 2 49 0 270 191 152 146 chr6 180964381 180964559 -8314995 - MIR SINE MIR -56 206 28 498 124 0 0 chr6 180964718 180964807 -8314747 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 2190 115 9 0 chr6 180964917 180965240 -8314314 - MER1A DNA MER1_type 0 529 204 253 293 7 75 chr6 180965407 180965554 -8314000 - MER5A DNA MER1_type -4 185 49 27 49 0 0 chr6 180966874 180966915 -8312639 + AT_rich Low_complexity Low_complexity 1 41 0 2198 118 0 9 chr6 180967641 180967956 -8311598 + AluSx SINE Alu 1 312 0 213 154 0 0 chr6 180968353 180968392 -8311162 + CT-rich Low_complexity Low_complexity 4 42 0 226 111 0 0 chr6 180968768 180968804 -8310750 - L2 LINE L2 0 3313 3278 2494 191 33 62 chr6 180968891 180969433 -8310121 + L1MC1 LINE L1 5656 6175 -158 2431 88 0 7 chr6 180969433 180969741 -8309813 + AluSg1 SINE Alu 2 307 -2 2494 191 33 62 chr6 180969741 180969896 -8309658 + L1MC1 LINE L1 6175 6333 0 397 320 95 53 chr6 180969934 180970868 -8308686 + L1ME3A LINE L1 272 1244 -4875 306 276 22 8 chr6 180971157 180971291 -8308263 + L1ME3A LINE L1 4720 4855 -1274 1786 148 17 3 chr6 180971434 180971725 -8307829 - AluJb SINE Alu -17 295 1 705 272 104 25 chr6 180971997 180972582 -8306972 + L1ME3A LINE L1 5289 5929 -224 1414 80 10 15 chr6 180972623 180972822 -8306732 - AluY SINE Alu -9 302 105 471 328 91 33 chr6 180973359 180974056 -8305498 + L2 LINE L2 2228 3177 -136 225 311 96 23 chr6 180974073 180974250 -8305304 - MLT1L LTR MaLR -18 597 408 228 311 0 16 chr6 180974287 180974348 -8305206 + L2 LINE L2 3143 3202 -70 271 315 27 45 chr6 180974696 180974807 -8304747 + L2 LINE L2 3160 3268 -4 297 128 0 0 chr6 180975121 180975168 -8304386 + (ATG)n Simple_repeat Simple_repeat 1 47 0 646 288 78 0 chr6 180975187 180975406 -8304148 - MIR SINE MIR -6 256 21 287 285 156 67 chr6 180975516 180975951 -8303603 + L3 LINE CR1 839 1363 -214 295 309 65 0 chr6 180975953 180976121 -8303433 - MER63A DNA MER1_type -5 205 27 826 70 0 53 chr6 180976421 180976566 -8302988 + AluSg/x SINE Alu 172 310 0 1888 148 4 0 chr6 180977224 180977528 -8302026 + AluSg SINE Alu 1 305 0 312 309 0 32 chr6 180978173 180978296 -8301258 - MIR SINE MIR -51 211 93 1502 116 0 0 chr6 180980984 180981183 -8298371 + AluSg/x SINE Alu 111 309 -1 1906 100 85 0 chr6 180981314 180981585 -8297969 - AluSg SINE Alu -13 297 4 2409 90 0 0 chr6 180981788 180982098 -8297456 + AluSx SINE Alu 1 310 -2 3001 235 24 1 chr6 180982334 180983091 -8296463 - L1MD1 LINE L1 0 6636 5863 3670 205 57 14 chr6 180983109 180984080 -8295474 - L1MD1 LINE L1 -4189 2351 1340 1104 165 11 240 chr6 180984094 180984558 -8294996 - L1MD1 LINE L1 -6095 445 125 1796 191 64 29 chr6 180984558 180984977 -8294577 + Tigger2a DNA MER2_type 1 434 0 1104 165 11 240 chr6 180984977 180985063 -8294491 - L1MD1 LINE L1 -6415 125 21 350 248 23 39 chr6 180985457 180985586 -8293968 - MER94 DNA DNA -2 132 6 302 141 250 0 chr6 180986537 180986601 -8292953 + MER116 DNA Mariner 1 80 0 205 311 133 0 chr6 180986640 180986730 -8292824 + L2 LINE L2 3203 3304 -9 187 279 52 91 chr6 180989703 180989857 -8289697 + MIR SINE MIR 2 149 -113 456 363 70 5 chr6 180990117 180990332 -8289222 - MIR SINE MIR -8 254 26 1878 152 13 25 chr6 180990383 180990699 -8288855 + AluJo SINE Alu 1 312 0 218 344 78 0 chr6 180991931 180992021 -8287533 + MIR SINE MIR 53 149 -113 244 316 59 7 chr6 180993080 180993216 -8286338 - MER20 DNA MER1_type -43 176 34 518 339 165 6 chr6 180993267 180993771 -8285783 + L2 LINE L2 1689 2272 -1042 473 219 8 0 chr6 180993772 180993891 -8285663 + CT-rich Low_complexity Low_complexity 1 120 0 1912 121 4 0 chr6 180993892 180994164 -8285390 - AluSx SINE Alu -39 273 1 266 33 0 83 chr6 180994517 180994577 -8284977 + (TTTTTA)n Simple_repeat Simple_repeat 6 60 0 618 291 78 48 chr6 180994759 180995171 -8284383 + L1ME LINE L1 36 459 -5611 2877 177 20 3 chr6 180995404 180996002 -8283552 + L1MC3 LINE L1 7161 7768 -17 1459 275 76 53 chr6 180996015 180996425 -8283129 + L1ME LINE L1 455 854 -5407 636 167 61 53 chr6 180996425 180996557 -8282997 + FLAM_C SINE Alu 1 133 0 1459 275 76 53 chr6 180996557 180997974 -8281580 + L1ME LINE L1 854 2365 -3896 346 289 70 35 chr6 180998456 180998598 -8280956 + MIR SINE MIR 14 160 -102 2220 102 0 3 chr6 180998598 180998891 -8280663 + AluSx SINE Alu 1 292 -20 472 240 47 8 chr6 180999026 180999155 -8280399 + MIR SINE MIR 127 260 -2 391 286 21 43 chr6 180999370 180999557 -8279997 - MIR SINE MIR -23 185 35 517 305 86 38 chr6 180999711 181000186 -8279368 + Charlie2b DNA MER1_type 174 671 -2111 261 209 0 0 chr6 181000202 181000269 -8279285 + (TCCA)n Simple_repeat Simple_repeat 1 67 0 1749 149 60 0 chr6 181000291 181000593 -8278961 - MER7A DNA MER2_type -26 320 3 2241 243 98 34 chr6 181000621 181001549 -8278005 + Charlie2a DNA MER1_type 1511 2543 -319 2960 214 25 14 chr6 181001549 181002193 -8277361 + MER82 DNA MER2_type 2 652 -1 2241 243 98 34 chr6 181002193 181002534 -8277020 + Charlie2a DNA MER1_type 2543 2861 -1 2124 118 3 16 chr6 181002816 181002951 -8276603 + AluSx SINE Alu 1 136 -176 2252 112 0 7 chr6 181002951 181003254 -8276300 + AluSg SINE Alu 1 301 -9 2124 118 3 16 chr6 181003254 181003422 -8276132 + AluSx SINE Alu 136 300 -12 1913 143 3 13 chr6 181003796 181004097 -8275457 - AluSx SINE Alu -14 298 1 24 0 0 0 chr6 181004371 181004395 -8275159 + AT_rich Low_complexity Low_complexity 1 24 0 406 310 46 2 chr6 181004534 181004732 -8274822 + MIR SINE MIR 13 254 -8 3119 179 20 20 chr6 181004857 181005520 -8274034 + L1MB8 LINE L1 5507 6169 -9 268 291 0 13 chr6 181006002 181006081 -8273473 - L2 LINE L2 -10 3303 3226 228 86 35 52 chr6 181006180 181006197 -8273357 + A-rich Low_complexity Low_complexity 1 17 -40 2296 110 7 0 chr6 181006197 181006505 -8273049 + AluSx SINE Alu 1 310 -2 228 86 35 52 chr6 181006505 181006545 -8273009 + A-rich Low_complexity Low_complexity 17 57 0 2020 100 0 19 chr6 181006545 181006814 -8272740 + AluSx SINE Alu 31 294 -18 218 193 18 0 chr6 181007460 181007517 -8272037 + (TG)n Simple_repeat Simple_repeat 2 59 0 1729 133 85 20 chr6 181007893 181008186 -8271368 + AluSx SINE Alu 1 312 0 1113 216 111 9 chr6 181008438 181008781 -8270773 + LTR40b LTR ERVL 1 378 -84 314 136 182 0 chr6 181008883 181008949 -8270605 + LTR40a LTR ERVL 442 519 0 2455 68 0 43 chr6 181009615 181009940 -8269614 + AluY SINE Alu 1 311 0 21 36 0 0 chr6 181010827 181010855 -8268699 + AT_rich Low_complexity Low_complexity 1 28 0 1521 184 0 31 chr6 181011497 181011785 -8267769 - AluJb SINE Alu -29 283 5 328 269 298 46 chr6 181012161 181012399 -8267155 + L2 LINE L2 3013 3310 -3 655 312 165 38 chr6 181012408 181013285 -8266269 + L2 LINE L2 2308 3313 0 390 322 17 0 chr6 181013577 181013695 -8265859 + L3 LINE CR1 408 527 -1050 388 339 138 23 chr6 181013883 181014311 -8265243 + L3 LINE CR1 628 1104 -473 228 67 0 0 chr6 181014584 181014614 -8264940 + (CA)n Simple_repeat Simple_repeat 2 31 0 2599 106 0 3 chr6 181014614 181014963 -8264591 + L1PB1 LINE L1 5803 6150 -1 432 335 105 29 chr6 181014991 181015200 -8264354 + L3 LINE CR1 1229 1453 -124 353 219 161 36 chr6 181015345 181015422 -8264132 - L2 LINE L2 -1 3312 3246 1769 116 52 0 chr6 181015422 181015673 -8263881 + AluSg SINE Alu 25 288 -22 353 219 161 36 chr6 181015673 181015732 -8263822 - L2 LINE L2 -67 3246 3159 2012 123 13 35 chr6 181015817 181016135 -8263419 - AluSx SINE Alu -1 311 1 299 78 20 0 chr6 181016142 181016193 -8263361 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 2146 100 7 0 chr6 181016193 181016472 -8263082 - AluSq SINE Alu -32 281 1 22 0 0 0 chr6 181016641 181016663 -8262891 + AT_rich Low_complexity Low_complexity 1 22 0 1908 59 38 0 chr6 181017284 181017520 -8262034 - L1PA5 LINE L1 -4 6150 5906 2617 17 0 14 chr6 181017532 181017865 -8261689 - AluYb8 SINE Alu 0 329 1 21 0 0 0 chr6 181017871 181017892 -8261662 + AT_rich Low_complexity Low_complexity 1 21 0 994 178 143 45 chr6 181018544 181018831 -8260723 - MER33 DNA MER1_type 0 324 10 327 228 0 0 chr6 181020610 181020702 -8258852 + (TG)n Simple_repeat Simple_repeat 1 92 0 2110 85 14 14 chr6 181020838 181021121 -8258433 - AluSc SINE Alu -26 283 1 2394 67 0 45 chr6 181021132 181021446 -8258108 - AluSp SINE Alu -13 300 1 5830 172 72 27 chr6 181023672 181024302 -8255252 - Tigger3b DNA MER2_type -1797 1231 631 1994 139 0 10 chr6 181024302 181024603 -8254951 - AluSx SINE Alu -14 298 1 5830 172 72 27 chr6 181024603 181024860 -8254694 - Tigger3b DNA MER2_type -2397 631 387 2258 99 3 3 chr6 181024860 181025153 -8254401 + AluSc SINE Alu 1 293 -16 5830 172 72 27 chr6 181025153 181025442 -8254112 - Tigger3b DNA MER2_type -2641 387 1 1942 143 10 0 chr6 181025884 181026051 -8253503 - AluSx SINE Alu -16 296 123 189 0 0 0 chr6 181026051 181026072 -8253482 + (TG)n Simple_repeat Simple_repeat 2 22 0 1942 143 10 0 chr6 181026072 181026197 -8253357 - AluSx SINE Alu -189 123 1 321 242 140 57 chr6 181027877 181028034 -8251520 - L3 LINE CR1 -24 1553 1384 343 223 21 32 chr6 181028275 181028369 -8251185 - LTR16B LTR ERVL -6 458 366 348 272 30 2 chr6 181028369 181028504 -8251050 + L1ME1 LINE L1 6028 6148 -18 243 189 0 0 chr6 181028605 181028658 -8250896 + GA-rich Low_complexity Low_complexity 1 53 0 862 327 20 23 chr6 181028673 181029068 -8250486 + L1MC4a LINE L1 5466 5859 -1949 528 325 138 31 chr6 181029335 181029720 -8249834 - L2 LINE L2 -613 2701 2276 246 320 0 20 chr6 181031203 181031303 -8248251 - L1ME4a LINE L1 -89 6032 5935 403 357 51 17 chr6 181031445 181031739 -8247815 - L1MC4a LINE L1 -1973 5835 5532 2307 109 0 3 chr6 181031862 181032164 -8247390 + AluSx SINE Alu 1 301 -11 810 164 0 36 chr6 181032869 181033009 -8246545 + AluJo SINE Alu 2 136 -176 225 0 0 0 chr6 181033102 181033127 -8246427 + (T)n Simple_repeat Simple_repeat 1 25 0 326 293 158 22 chr6 181033629 181033851 -8245703 + MIR SINE MIR 8 259 -3 331 291 88 84 chr6 181033863 181034148 -8245406 - L2 LINE L2 -40 3232 2947 207 0 0 0 chr6 181034152 181034175 -8245379 + (TTCC)n Simple_repeat Simple_repeat 4 26 0 1636 126 115 11 chr6 181035926 181036195 -8243359 + AluSg SINE Alu 1 297 -13 1071 169 0 0 chr6 181036195 181036361 -8243193 + AluSg/x SINE Alu 134 299 -13 1071 92 0 39 chr6 181037591 181037744 -8241810 + AluSq/x SINE Alu 1 147 -166 2303 100 0 6 chr6 181037744 181038055 -8241499 + AluY SINE Alu 1 309 -2 202 295 62 78 chr6 181038908 181039037 -8240517 + MIR3 SINE MIR 60 186 -22 1513 233 174 20 chr6 181039135 181039671 -8239883 + MLT2F LTR ERVL 1 618 -45 1929 143 44 0 chr6 181041042 181041336 -8238218 + AluSx SINE Alu 1 307 -5 235 336 151 14 chr6 181041697 181041843 -8237711 + MIR SINE MIR 49 214 -48 202 273 0 0 chr6 181042300 181042344 -8237210 + L2 LINE L2 3262 3305 -8 1681 137 57 10 chr6 181042835 181043134 -8236420 + L1MA4 LINE L1 5988 6300 0 276 100 0 0 chr6 181043450 181043490 -8236064 + (T)n Simple_repeat Simple_repeat 1 40 0 1807 67 4 0 chr6 181043508 181043733 -8235821 - AluSp SINE Alu -1 312 87 266 344 38 25 chr6 181044083 181044240 -8235314 + L2 LINE L2 2703 2861 -453 306 264 14 0 chr6 181044537 181044609 -8234945 + L2 LINE L2 3241 3313 0 2310 85 10 3 chr6 181045239 181045546 -8234008 - AluSq SINE Alu -4 309 1 26 50 0 0 chr6 181045896 181045936 -8233618 + AT_rich Low_complexity Low_complexity 1 40 0 1420 205 40 7 chr6 181045958 181046231 -8233323 + AluJo SINE Alu 1 282 -30 2141 116 0 26 chr6 181046419 181046730 -8232824 - AluSx SINE Alu -9 303 1 23 0 0 0 chr6 181047038 181047061 -8232493 + AT_rich Low_complexity Low_complexity 1 23 0 1684 180 14 0 chr6 181047248 181047532 -8232022 - AluJo SINE Alu -24 288 1 21 36 0 0 chr6 181047693 181047721 -8231833 + AT_rich Low_complexity Low_complexity 1 28 0 262 395 51 6 chr6 181047808 181047965 -8231589 - MIR3 SINE MIR -23 185 22 2141 111 0 40 chr6 181048213 181048538 -8231016 - AluSx SINE Alu 0 312 1 191 103 26 0 chr6 181049122 181049161 -8230393 + GA-rich Low_complexity Low_complexity 1 40 0 426 328 115 27 chr6 181049191 181049487 -8230067 + L1ME3A LINE L1 132 453 -5666 269 188 75 12 chr6 181049501 181049581 -8229973 + L1 LINE L1 4739 4823 -1323 459 303 78 38 chr6 181049659 181050454 -8229100 + L1ME3A LINE L1 4987 5816 -337 757 197 14 0 chr6 181050459 181050601 -8228953 + MER5A DNA MER1_type 7 150 -39 198 0 0 0 chr6 181051326 181051348 -8228206 + (A)n Simple_repeat Simple_repeat 1 22 0 517 291 98 25 chr6 181052159 181052434 -8227120 + L2 LINE L2 2487 2781 -533 21 0 0 0 chr6 181052499 181052520 -8227034 + AT_rich Low_complexity Low_complexity 1 21 0 368 331 42 60 chr6 181052783 181052949 -8226605 + L2 LINE L2 3110 3272 0 213 348 14 72 chr6 181052981 181053064 -8226490 + MIR3 SINE MIR 15 88 -120 2392 118 8 33 chr6 181053064 181053428 -8226126 - THE1A LTR MaLR 0 355 1 213 348 14 72 chr6 181053428 181053482 -8226072 + MIR3 SINE MIR 88 144 -64 689 94 0 0 chr6 181053844 181053965 -8225589 + AluJb SINE Alu 201 321 0 22 0 0 0 chr6 181054840 181054862 -8224692 + AT_rich Low_complexity Low_complexity 1 22 0 2036 127 3 3 chr6 181055715 181056026 -8223528 + AluSx SINE Alu 1 311 0 24 0 0 0 chr6 181056935 181056959 -8222595 + AT_rich Low_complexity Low_complexity 1 24 0 1893 149 30 0 chr6 181058271 181058566 -8220988 + AluSx SINE Alu 1 304 -8 365 151 0 14 chr6 181058570 181058643 -8220911 + GA-rich Low_complexity Low_complexity 1 72 0 2178 117 27 0 chr6 181058847 181059146 -8220408 + AluSx SINE Alu 2 308 -4 900 152 8 0 chr6 181059722 181059854 -8219700 + FLAM_C SINE Alu 1 133 0 2264 125 0 0 chr6 181060152 181060455 -8219099 - AluSq SINE Alu -8 305 3 2111 112 3 37 chr6 181061544 181061866 -8217688 + AluSx SINE Alu 1 311 -1 193 382 59 0 chr6 181061905 181062007 -8217547 - L2 LINE L2 -3 3269 3162 535 182 11 155 chr6 181062204 181062324 -8217230 + MER5B DNA MER1_type 19 104 -74 2348 72 0 29 chr6 181062324 181062630 -8216924 - AluY SINE Alu -14 297 1 535 182 11 155 chr6 181062630 181062696 -8216858 + MER5B DNA MER1_type 104 178 0 1876 142 3 3 chr6 181063453 181063741 -8215813 - AluSx SINE Alu -24 288 1 1444 100 0 4 chr6 181064045 181064265 -8215289 + AluSp SINE Alu 6 303 -10 849 152 0 8 chr6 181065042 181065167 -8214387 + FLAM_C SINE Alu 1 124 -19 21 0 0 0 chr6 181065167 181065188 -8214366 + AT_rich Low_complexity Low_complexity 1 21 0 183 177 21 42 chr6 181066711 181066807 -8212747 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 1944 151 0 0 chr6 181067194 181067498 -8212056 - AluJb SINE Alu -8 304 1 2247 107 10 7 chr6 181068455 181068755 -8210799 + AluSx SINE Alu 1 301 -11 872 159 0 0 chr6 181068809 181068935 -8210619 + FLAM_C SINE Alu 1 126 -7 401 158 42 108 chr6 181069063 181069183 -8210371 + MIR SINE MIR 80 191 -71 236 177 18 168 chr6 181070226 181070339 -8209215 + MIR SINE MIR 57 152 -110 805 295 63 40 chr6 181070353 181070828 -8208726 + L2 LINE L2 2828 3313 0 30 21 0 21 chr6 181070908 181070939 -8208615 + AT_rich Low_complexity Low_complexity 1 32 -15 1591 166 50 11 chr6 181070939 181071217 -8208337 - AluJb SINE Alu -23 289 1 30 21 0 21 chr6 181071217 181071233 -8208321 + AT_rich Low_complexity Low_complexity 32 47 0 1878 88 0 0 chr6 181071444 181071683 -8207871 + AluSg SINE Alu 1 239 -71 2062 86 12 89 chr6 181073085 181073411 -8206143 + AluSq SINE Alu 1 301 -12 625 150 0 80 chr6 181073759 181073872 -8205682 + FRAM SINE Alu 43 146 -30 261 0 0 0 chr6 181073877 181073906 -8205648 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1903 149 14 0 chr6 181073947 181074243 -8205311 - AluSx SINE Alu -7 305 6 1431 150 181 75 chr6 181074587 181074922 -8204632 - LTR47A LTR ERVL 0 452 67 2341 89 3 16 chr6 181074922 181075237 -8204317 + AluSp SINE Alu 1 311 -2 1431 150 181 75 chr6 181075237 181075300 -8204254 - LTR47A LTR ERVL -385 67 12 398 264 40 101 chr6 181075500 181075727 -8203827 + MIR SINE MIR 1 213 -49 2012 145 3 3 chr6 181075849 181076153 -8203401 + AluSx SINE Alu 1 304 -8 1420 104 47 0 chr6 181076159 181076352 -8203202 + AluSx SINE Alu 1 202 -110 4034 77 11 15 chr6 181076352 181076900 -8202654 - LTR8 LTR ERV1 0 691 146 255 62 0 0 chr6 181076895 181076927 -8202627 - LTR8 LTR ERV1 -656 35 4 * 761 123 0 0 chr6 181076927 181077033 -8202521 + AluSx SINE Alu 194 299 -11 2147 116 0 13 chr6 181078316 181078618 -8200936 + AluSx SINE Alu 1 298 -14 220 311 58 10 chr6 181078666 181078769 -8200785 + MIR SINE MIR 41 148 -114 2167 112 0 0 chr6 181078777 181079063 -8200491 + AluSx SINE Alu 15 300 -12 240 235 0 0 chr6 181080464 181080515 -8199039 + (TA)n Simple_repeat Simple_repeat 1 51 0 1932 154 7 3 chr6 181080701 181081000 -8198554 + AluSx SINE Alu 1 300 -12 203 256 0 0 chr6 181081971 181082014 -8197540 + (CATA)n Simple_repeat Simple_repeat 4 46 0 22 56 0 0 chr6 181082074 181082110 -8197444 + AT_rich Low_complexity Low_complexity 1 36 0 305 250 0 0 chr6 181082205 181082265 -8197289 - MER5B DNA MER1_type 0 178 119 2006 133 7 7 chr6 181083194 181083503 -8196051 + AluSx SINE Alu 4 312 0 2216 101 24 0 chr6 181084992 181085290 -8194264 - AluSx SINE Alu -7 305 1 908 151 0 0 chr6 181085293 181085432 -8194122 - AluSg/x SINE Alu -1 311 173 2295 98 3 7 chr6 181085600 181085906 -8193648 + AluSq SINE Alu 1 305 -8 404 275 324 7 chr6 181086190 181086499 -8193055 - L2 LINE L2 -26 3287 2881 199 269 87 58 chr6 181086558 181086662 -8192892 + MER5A DNA MER1_type 20 126 -63 * 319 367 68 0 chr6 181086582 181086729 -8192825 - MER5A DNA MER1_type -30 159 3 490 226 186 23 chr6 181087346 181087523 -8192031 - MIR SINE MIR -55 207 2 501 354 106 19 chr6 181087925 181088340 -8191214 - L3 LINE CR1 -101 1476 1026 342 257 46 51 chr6 181088737 181088912 -8190642 - L3 LINE CR1 -571 1006 833 326 284 93 74 chr6 181089013 181089228 -8190326 - L3 LINE CR1 -752 825 607 21 0 0 0 chr6 181089714 181089735 -8189819 + AT_rich Low_complexity Low_complexity 1 21 0 2385 82 3 0 chr6 181089747 181090051 -8189503 - AluSx SINE Alu -7 305 1 2213 106 0 19 chr6 181090079 181090391 -8189163 + AluSg SINE Alu 1 306 -4 23 33 0 0 chr6 181090712 181090742 -8188812 + AT_rich Low_complexity Low_complexity 1 30 0 2273 113 3 0 chr6 181091175 181091477 -8188077 - AluSx SINE Alu -9 303 1 2055 96 50 0 chr6 181091537 181091818 -8187736 - AluSq SINE Alu -18 295 1 295 274 24 48 chr6 181092526 181092650 -8186904 - MIR SINE MIR -66 196 76 2164 114 0 3 chr6 181092666 181092956 -8186598 - AluSq SINE Alu -24 289 1 2344 102 3 0 chr6 181093126 181093431 -8186123 - AluSc SINE Alu -3 306 1 1272 205 84 32 chr6 181094073 181094420 -8185134 + MLT1A1 LTR MaLR 1 365 0 2159 108 14 0 chr6 181094714 181095011 -8184543 - AluSx SINE Alu -11 301 1 450 275 105 96 chr6 181095317 181095641 -8183913 - LTR16C LTR ERVL 0 491 165 184 219 73 94 chr6 181096897 181096993 -8182561 - L2 LINE L2 0 3272 3179 1424 290 111 20 chr6 181097491 181098191 -8181363 - L2 LINE L2 -775 2539 1776 1238 124 6 0 chr6 181098729 181098906 -8180648 + AluSg/x SINE Alu 133 310 0 229 309 163 37 chr6 181098929 181099296 -8180258 - L2 LINE L2 -2223 1091 772 2360 93 7 0 chr6 181099296 181099606 -8179948 + AluSp SINE Alu 1 312 -1 229 309 163 37 chr6 181099606 181099856 -8179698 - L2 LINE L2 -2542 772 396 2089 103 35 0 chr6 181100792 181101074 -8178480 + AluSq SINE Alu 10 301 -12 428 238 56 14 chr6 181101118 181101261 -8178293 + MLT1E LTR MaLR 445 593 0 558 0 0 0 chr6 181101417 181101479 -8178075 + (TG)n Simple_repeat Simple_repeat 2 63 0 2271 112 0 0 chr6 181101542 181101845 -8177709 + AluSc SINE Alu 2 304 -5 2179 118 16 3 chr6 181102577 181102883 -8176671 - AluSx SINE Alu -1 311 2 2463 81 3 0 chr6 181103395 181103702 -8175852 - AluSp SINE Alu -4 309 2 1661 186 6 19 chr6 181103704 181104015 -8175539 - AluSx SINE Alu -5 307 1 1631 75 0 5 chr6 181104041 181104242 -8175312 + AluY SINE Alu 99 298 -13 191 304 89 0 chr6 181106030 181106109 -8173445 - L2 LINE L2 -220 3052 2967 234 352 67 22 chr6 181106247 181106426 -8173128 - L2 LINE L2 -497 2817 2631 15489 144 27 24 chr6 181106452 181108095 -8171459 + L1MA1 LINE L1 11 1648 -5917 2434 77 0 7 chr6 181108095 181108405 -8171149 + AluY SINE Alu 1 308 -3 15489 144 27 24 chr6 181108405 181109139 -8170415 + L1MA1 LINE L1 1648 2378 -5187 2318 111 0 0 chr6 181109139 181109446 -8170108 + AluSc SINE Alu 1 307 -2 15489 144 27 24 chr6 181109446 181110475 -8169079 + L1MA1 LINE L1 2378 3402 -4163 1945 130 0 24 chr6 181110475 181110768 -8168786 + AluSq SINE Alu 1 286 -27 390 21 0 0 chr6 181110768 181110815 -8168739 + (CATA)n Simple_repeat Simple_repeat 2 48 0 15489 144 27 24 chr6 181110815 181111293 -8168261 + L1MA1 LINE L1 3401 4036 -3529 8183 157 29 13 chr6 181111329 181113375 -8166179 + L1MA1 LINE L1 4523 6592 -973 6221 97 38 36 chr6 181115044 181116116 -8163438 + L1MA1 LINE L1 6576 7658 -63 2227 120 7 3 chr6 181116116 181116424 -8163130 + AluSq SINE Alu 1 309 -4 6221 97 38 36 chr6 181116424 181116484 -8163070 + L1MA1 LINE L1 7658 7716 -5 200 280 160 0 chr6 181117471 181117546 -8162008 + MIR SINE MIR 64 150 -112 438 167 56 86 chr6 181118636 181118798 -8160756 - L2 LINE L2 -7 3306 3150 2193 110 3 3 chr6 181118860 181119160 -8160394 + AluSx SINE Alu 1 300 -12 273 281 136 27 chr6 181119378 181119599 -8159955 + L1MEd LINE L1 6 250 -5869 425 357 91 0 chr6 181119736 181119786 -8159768 + L1MEd LINE L1 502 546 -5573 213 39 0 0 chr6 181119786 181119812 -8159742 + (CAA)n Simple_repeat Simple_repeat 2 27 0 425 357 91 0 chr6 181119812 181119960 -8159594 + L1MEd LINE L1 546 718 -5401 1585 255 41 14 chr6 181120272 181120786 -8158768 - L1ME3 LINE L1 -1 6161 5634 2292 138 36 19 chr6 181120843 181121256 -8158298 + MSTA LTR MaLR 1 420 -8 1029 231 96 19 chr6 181121268 181121631 -8157923 - MSTD LTR MaLR 0 396 6 486 196 15 10 chr6 181121645 181121835 -8157719 - L1ME2 LINE L1 -224 5940 5648 269 231 0 0 chr6 181122229 181122281 -8157273 - L2 LINE L2 0 3313 3262 198 333 131 46 chr6 181122583 181122971 -8156583 - L2 LINE L2 -340 2974 2554 645 296 20 5 chr6 181123655 181123851 -8155703 + MER58A DNA MER1_type 1 199 -25 27 29 0 0 chr6 181125750 181125784 -8153770 + AT_rich Low_complexity Low_complexity 1 34 0 1941 177 0 19 chr6 181126469 181126842 -8152712 - MER47A DNA MER2_type 0 366 1 503 327 237 37 chr6 181126842 181127013 -8152541 - L2 LINE L2 -700 2614 2478 1838 163 21 0 chr6 181127013 181127302 -8152252 - AluSx SINE Alu -17 295 1 503 327 237 37 chr6 181127302 181129165 -8150389 - L2 LINE L2 -836 2478 174 389 353 13 7 chr6 181129391 181129544 -8150010 - MIR3 SINE MIR -25 183 30 22 35 0 0 chr6 181129652 181129681 -8149873 + AT_rich Low_complexity Low_complexity 1 29 0 925 264 29 0 chr6 181130383 181130622 -8148932 - MIR SINE MIR -11 251 6 472 318 255 11 chr6 181131484 181131962 -8147592 + L3 LINE CR1 588 1182 -395 180 317 211 10 chr6 181131990 181132094 -8147460 + L2 LINE L2 3147 3271 -1 290 249 55 143 chr6 181132114 181132193 -8147361 + L3 LINE CR1 1213 1297 -280 2577 41 0 25 chr6 181132193 181132508 -8147046 + AluY SINE Alu 1 307 -4 290 249 55 143 chr6 181132508 181132665 -8146889 + L3 LINE CR1 1297 1428 -149 673 129 81 8 chr6 181132793 181132917 -8146637 + AluSp/q SINE Alu 181 313 0 376 328 44 22 chr6 181133322 181133502 -8146052 - MIR SINE MIR -72 190 7 21 36 0 0 chr6 181134855 181134883 -8144671 + AT_rich Low_complexity Low_complexity 1 28 0 319 333 18 9 chr6 181136556 181136667 -8142887 + L2 LINE L2 3198 3309 -4 21 36 0 0 chr6 181136735 181136763 -8142791 + AT_rich Low_complexity Low_complexity 1 28 0 1875 118 78 44 chr6 181137336 181137533 -8142021 - L1MA7 LINE L1 -4 6287 6098 2026 139 0 0 chr6 181137533 181137821 -8141733 - AluSx SINE Alu -24 288 1 1875 118 78 44 chr6 181137821 181138031 -8141523 - L1MA7 LINE L1 -193 6098 5866 623 300 18 18 chr6 181138126 181138346 -8141208 - MIR SINE MIR 0 262 43 28 48 0 0 chr6 181138719 181138761 -8140793 + AT_rich Low_complexity Low_complexity 1 42 0 2126 82 0 18 chr6 181139427 181139707 -8139847 - AluSc SINE Alu -6 303 29 210 37 0 0 chr6 181139996 181140023 -8139531 + (CA)n Simple_repeat Simple_repeat 1 27 0 764 192 8 0 chr6 181141011 181141141 -8138413 - FLAM_C SINE Alu -10 133 3 445 318 56 5 chr6 181141189 181141384 -8138170 - HAL1 LINE L1 -908 1599 1395 330 283 69 31 chr6 181141762 181141921 -8137633 + MLT1H LTR MaLR 385 549 0 1985 138 13 3 chr6 181142098 181142402 -8137152 - AluSx SINE Alu -5 307 1 917 155 0 0 chr6 181142631 181142773 -8136781 - AluSq/x SINE Alu -170 142 1 3347 125 28 10 chr6 181143843 181144421 -8135133 - LTR38B LTR ERV1 -22 588 1 339 311 88 29 chr6 181144465 181144851 -8134703 - L1ME LINE L1 -322 5799 5391 382 320 29 40 chr6 181144912 181145087 -8134467 - L1ME LINE L1 -850 5296 5124 2297 102 7 3 chr6 181146530 181146833 -8132721 + AluSx SINE Alu 1 304 -8 2105 113 0 0 chr6 181147318 181147638 -8131916 + AluSx SINE Alu 1 320 0 1554 218 7 0 chr6 181147649 181147934 -8131620 + AluJb SINE Alu 1 287 -25 24 53 0 0 chr6 181147936 181147974 -8131580 + AT_rich Low_complexity Low_complexity 1 38 0 35 63 0 0 chr6 181148274 181148337 -8131217 + AT_rich Low_complexity Low_complexity 1 63 0 389 236 0 18 chr6 181149417 181149755 -8129799 + (CA)n Simple_repeat Simple_repeat 1 331 0 1894 170 0 6 chr6 181150155 181150467 -8129087 + AluJb SINE Alu 1 310 -2 2234 88 7 0 chr6 181151479 181151764 -8127790 + AluSq SINE Alu 1 287 -26 187 308 15 15 chr6 181152054 181152119 -8127435 + MIR SINE MIR 88 152 -110 704 192 43 99 chr6 181152902 181153300 -8126254 + MSTD LTR MaLR 1 396 0 2566 68 0 0 chr6 181153932 181154243 -8125311 + AluY SINE Alu 1 311 0 2221 112 20 0 chr6 181154760 181154774 -8124780 - AluSg SINE Alu 0 310 298 865 66 0 29 chr6 181154774 181154910 -8124644 + (TCCCC)n Simple_repeat Simple_repeat 4 135 0 2221 112 20 0 chr6 181154910 181155199 -8124355 - AluSg SINE Alu -12 298 1 2175 105 3 10 chr6 181155709 181156005 -8123549 - AluSq SINE Alu -19 294 1 213 374 8 8 chr6 181156033 181156156 -8123398 - MIR SINE MIR -106 156 34 2209 128 3 0 chr6 181157132 181157436 -8122118 - AluSx SINE Alu -7 305 1 2120 137 0 0 chr6 181158014 181158307 -8121247 - AluSx SINE Alu -15 297 5 2469 51 0 0 chr6 181158555 181158851 -8120703 - AluY SINE Alu -15 296 1 23 68 0 0 chr6 181159521 181159565 -8119989 + AT_rich Low_complexity Low_complexity 1 44 0 227 259 0 56 chr6 181159882 181159936 -8119618 + L2 LINE L2 3201 3251 -21 22 35 0 0 chr6 181160145 181160174 -8119380 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr6 181161344 181161372 -8118182 + AT_rich Low_complexity Low_complexity 1 28 0 706 134 0 0 chr6 181161372 181161491 -8118063 - L1MA4A LINE L1 -5 6298 6180 1923 138 30 0 chr6 181161994 181162291 -8117263 - AluSx SINE Alu -6 306 1 27 49 0 0 chr6 181162803 181162844 -8116710 + AT_rich Low_complexity Low_complexity 1 41 0 1993 118 20 3 chr6 181163871 181164168 -8115386 + AluSx SINE Alu 1 302 -10 919 223 92 10 chr6 181164183 181164586 -8114968 - Charlie2 DNA MER1_type -1 2861 2426 2381 86 0 0 chr6 181164893 181165185 -8114369 + AluY SINE Alu 1 292 -19 2221 117 13 0 chr6 181165248 181165556 -8113998 - AluSx SINE Alu 0 312 1 2278 107 3 0 chr6 181169029 181169338 -8110216 + AluSx SINE Alu 2 311 -1 27 29 0 0 chr6 181169420 181169454 -8110100 + AT_rich Low_complexity Low_complexity 1 34 0 604 132 170 0 chr6 181169775 181169881 -8109673 - FLAM_C SINE Alu -18 125 2 488 268 245 23 chr6 181170052 181170354 -8109200 + MLT1I LTR MaLR 41 409 0 293 215 0 13 chr6 181170707 181170786 -8108768 + (TATATG)n Simple_repeat Simple_repeat 3 80 0 2031 121 10 3 chr6 181171595 181171892 -8107662 + AluSx SINE Alu 1 299 -13 296 378 117 0 chr6 181172088 181172268 -8107286 - L2 LINE L2 -70 3202 3002 210 355 102 47 chr6 181172471 181172727 -8106827 - L2 LINE L2 -497 2817 2548 232 304 88 40 chr6 181173436 181173584 -8105970 - MIR SINE MIR -8 254 100 1710 213 26 4 chr6 181176504 181176960 -8102594 - L1PA16 LINE L1 -743 5403 4938 4770 103 25 20 chr6 181176969 181177723 -8101831 + L1PA16 LINE L1 5405 6162 -4 25 0 0 0 chr6 181177723 181177748 -8101806 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr6 181178026 181178056 -8101498 + AT_rich Low_complexity Low_complexity 1 30 0 2249 101 10 3 chr6 181178214 181178520 -8101034 + AluSx SINE Alu 1 308 -4 330 258 94 0 chr6 181179281 181179409 -8100145 - MER58C DNA MER1_type 0 215 76 273 175 0 0 chr6 181179409 181179449 -8100105 + Alu SINE Alu 1 40 -268 251 233 56 22 chr6 181179571 181179661 -8099893 + L2 LINE L2 3182 3274 -39 1972 90 4 0 chr6 181179700 181179955 -8099599 - AluSc SINE Alu -25 284 29 30 0 0 0 chr6 181180647 181180677 -8098877 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 181181135 181181156 -8098398 + AT_rich Low_complexity Low_complexity 1 21 0 298 271 24 12 chr6 181181485 181181570 -8097984 - MIR3 SINE MIR -54 154 69 1385 177 98 0 chr6 181181766 181182031 -8097523 + AluJo SINE Alu 3 293 -19 2069 100 0 7 chr6 181182036 181182317 -8097237 + AluSg SINE Alu 1 279 -31 29 60 0 0 chr6 181182734 181182784 -8096770 + AT_rich Low_complexity Low_complexity 1 50 0 1970 90 8 4 chr6 181183801 181184057 -8095497 - AluSq SINE Alu -6 307 51 219 253 80 27 chr6 181184242 181184317 -8095237 + L2 LINE L2 2366 2444 -870 722 224 20 51 chr6 181184364 181184618 -8094936 - LTR37B LTR ERV1 -25 443 198 977 242 63 115 chr6 181184964 181185788 -8093766 - MER31-int LTR ERV1 -885 4051 3333 327 233 7 96 chr6 181186095 181186241 -8093313 - MER31-int LTR ERV1 -1869 3067 2935 268 286 171 0 chr6 181186653 181186758 -8092796 - MER31-int LTR ERV1 -2340 2596 2474 2432 100 0 0 chr6 181188177 181188488 -8091066 + AluSx SINE Alu 1 311 -1 215 325 190 15 chr6 181189836 181190036 -8089518 + MIR SINE MIR 2 236 -26 2510 65 7 0 chr6 181190924 181191233 -8088321 - AluY SINE Alu 0 311 1 22 56 0 0 chr6 181191291 181191327 -8088227 + AT_rich Low_complexity Low_complexity 1 36 0 1760 169 0 35 chr6 181191332 181191645 -8087909 - AluJo SINE Alu -10 302 1 2084 164 6 0 chr6 181191683 181192018 -8087536 - MER7A DNA MER2_type -11 335 1 29 28 0 0 chr6 181192225 181192261 -8087293 + AT_rich Low_complexity Low_complexity 1 36 0 29 28 0 0 chr6 181192331 181192367 -8087187 + AT_rich Low_complexity Low_complexity 1 36 0 252 0 0 0 chr6 181193011 181193039 -8086515 + (A)n Simple_repeat Simple_repeat 1 28 0 2322 105 0 0 chr6 181193439 181193743 -8085811 - AluSx SINE Alu -8 304 1 1800 173 63 6 chr6 181193843 181194208 -8085346 + MLT2C1 LTR ERVL 12 397 0 537 267 9 9 chr6 181194235 181194351 -8085203 - L2 LINE L2 -10 3303 3188 448 260 8 41 chr6 181194378 181194501 -8085053 + MER94 DNA DNA 1 119 -15 323 106 0 0 chr6 181194685 181194732 -8084822 + Alu SINE Alu 248 294 -8 2762 7 0 3 chr6 181195377 181195682 -8083872 + AluYa5 SINE Alu 1 304 -7 243 0 0 0 chr6 181196181 181196208 -8083346 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 836 224 56 0 chr6 181197050 181197246 -8082308 - MER20 DNA MER1_type -3 216 10 754 168 0 36 chr6 181197720 181197857 -8081697 + FLAM_C SINE Alu 2 133 0 309 109 0 0 chr6 181198374 181198429 -8081125 + (TG)n Simple_repeat Simple_repeat 2 56 0 303 371 35 14 chr6 181198644 181198787 -8080767 + MIR SINE MIR 39 184 -78 204 323 138 46 chr6 181199086 181199281 -8080273 - MIR SINE MIR -49 213 1 608 300 12 0 chr6 181199363 181199523 -8080031 - MIR SINE MIR -90 172 11 1440 127 3 25 chr6 181199714 181199997 -8079557 - THE1C LTR MaLR 0 375 1 29 47 0 0 chr6 181200169 181200212 -8079342 + AT_rich Low_complexity Low_complexity 1 43 0 275 333 0 0 chr6 181201367 181201454 -8078100 - MER117 DNA MER1_type -105 92 6 284 240 16 116 chr6 181202106 181202227 -8077327 + L2 LINE L2 3164 3272 0 2109 103 33 0 chr6 181203450 181203790 -8075764 + AluSx SINE Alu 1 350 0 21 71 0 0 chr6 181205208 181205250 -8074304 + AT_rich Low_complexity Low_complexity 1 42 0 2242 105 3 0 chr6 181206041 181206335 -8073219 + AluSp SINE Alu 1 295 -18 24 53 0 0 chr6 181206862 181206900 -8072654 + AT_rich Low_complexity Low_complexity 1 38 0 1000 184 108 0 chr6 181206900 181207112 -8072442 - L1PB4 LINE L1 -13 6143 5909 811 117 0 8 chr6 181207126 181207254 -8072300 - L1PB4 LINE L1 -449 5707 5581 2720 211 2 8 chr6 181207311 181207921 -8071633 - L1PB4 LINE L1 -824 5322 4717 483 273 87 7 chr6 181208218 181208368 -8071186 - MIR SINE MIR -20 242 81 193 256 0 23 chr6 181208751 181208794 -8070760 + MIR3 SINE MIR 115 156 -52 22 70 0 0 chr6 181208937 181208980 -8070574 + AT_rich Low_complexity Low_complexity 1 43 0 6205 74 22 9 chr6 181209001 181209988 -8069566 - L1PA8A LINE L1 -28 6103 5109 8028 115 6 6 chr6 181209988 181211195 -8068359 + L1PA8A LINE L1 3884 5090 -1056 1185 228 21 0 chr6 181212761 181213002 -8066552 + MIR SINE MIR 9 254 -8 214 261 0 0 chr6 181213950 181213996 -8065558 + (ATGGTG)n Simple_repeat Simple_repeat 4 49 0 296 369 45 19 chr6 181214031 181214188 -8065366 - MIR SINE MIR -96 166 6 2446 71 0 0 chr6 181216280 181216577 -8062977 + AluSc SINE Alu 1 297 -12 210 167 12 60 chr6 181216795 181216879 -8062675 + A-rich Low_complexity Low_complexity 2 81 0 21 0 0 0 chr6 181217614 181217635 -8061919 + AT_rich Low_complexity Low_complexity 1 21 0 333 68 0 0 chr6 181217747 181217791 -8061763 + (TG)n Simple_repeat Simple_repeat 2 45 0 247 369 14 9 chr6 181217922 181218136 -8061418 + L1ME LINE L1 5578 5792 -329 1714 156 65 0 chr6 181218472 181218747 -8060807 - AluJb SINE Alu -19 293 1 361 348 38 30 chr6 181218924 181219160 -8060394 + MIR SINE MIR 13 250 -12 2097 92 0 14 chr6 181220090 181220410 -8059144 - AluSc SINE Alu 0 316 1 321 313 45 17 chr6 181220686 181220862 -8058692 + L1 LINE L1 4478 4658 -1488 2004 122 10 0 chr6 181221842 181222145 -8057409 + AluSx SINE Alu 1 306 -6 198 0 0 0 chr6 181222528 181222550 -8057004 + (A)n Simple_repeat Simple_repeat 1 22 0 3239 227 43 37 chr6 181222868 181223844 -8055710 - L1ME1 LINE L1 -7 6159 5190 2099 123 3 3 chr6 181223844 181224136 -8055418 - AluSx SINE Alu -20 292 1 333 0 0 0 chr6 181224136 181224173 -8055381 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1982 116 11 14 chr6 181224180 181224464 -8055090 - AluSq SINE Alu -29 284 2 3239 227 43 37 chr6 181224464 181224629 -8054925 - L1ME1 LINE L1 -981 5185 5002 184 209 15 15 chr6 181225271 181225338 -8054216 + (TA)n Simple_repeat Simple_repeat 1 67 0 261 243 10 29 chr6 181225376 181225479 -8054075 + (TA)n Simple_repeat Simple_repeat 1 101 0 3256 121 80 69 chr6 181226424 181227051 -8052503 + MER51A LTR ERV1 1 634 0 201 39 0 0 chr6 181227097 181227123 -8052431 + (CATATA)n Simple_repeat Simple_repeat 3 28 0 278 289 42 53 chr6 181227123 181227313 -8052241 + L1ME LINE L1 5596 5783 -338 3091 125 7 51 chr6 181227317 181227862 -8051692 + L1PA15 LINE L1 5643 6163 -2 617 191 191 6 chr6 181228258 181228426 -8051128 - MER3 DNA MER1_type 0 209 11 21 0 0 0 chr6 181229769 181229790 -8049764 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 181231120 181231141 -8048413 + GC_rich Low_complexity Low_complexity 1 21 0 211 154 19 39 chr6 181231316 181231368 -8048186 + C-rich Low_complexity Low_complexity 3 53 0 2009 142 0 10 chr6 181232864 181233174 -8046380 - AluJo SINE Alu -5 307 1 661 256 14 28 chr6 181233460 181233675 -8045879 - LTR4 LTR ERV1 0 596 385 283 262 145 58 chr6 181233891 181234063 -8045491 - LTR4 LTR ERV1 -396 200 14 238 239 45 0 chr6 181235173 181235240 -8044314 - MER91A DNA MER1_type -126 70 1 231 247 185 12 chr6 181235255 181235336 -8044218 - L1MC/D LINE L1 -2277 5531 5437 332 242 33 11 chr6 181235422 181235513 -8044041 - L2 LINE L2 -27 3286 3194 215 330 105 60 chr6 181236912 181237112 -8042442 - L2 LINE L2 -110 3162 2954 2873 6 0 0 chr6 181237898 181238209 -8041345 + AluYb8 SINE Alu 1 311 -7 225 0 0 0 chr6 181238728 181238753 -8040801 + (T)n Simple_repeat Simple_repeat 1 25 0 222 37 0 0 chr6 181239680 181239707 -8039847 + (TG)n Simple_repeat Simple_repeat 1 27 0 2418 64 0 7 chr6 181239922 181240218 -8039336 - AluY SINE Alu -17 294 1 1352 185 142 66 chr6 181240947 181241062 -8038492 - MLT1D LTR MaLR 0 624 519 1730 155 62 24 chr6 181241062 181241353 -8038201 - AluJo SINE Alu -10 302 1 1352 185 142 66 chr6 181241353 181241680 -8037874 - MLT1D LTR MaLR -105 519 40 297 75 0 0 chr6 181241839 181241879 -8037675 + (TG)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr6 181243259 181243280 -8036274 + AT_rich Low_complexity Low_complexity 1 21 0 446 265 33 0 chr6 181243515 181243640 -8035914 + MIR SINE MIR 62 189 -65 180 283 35 80 chr6 181244114 181244227 -8035327 + L2 LINE L2 2201 2308 -1006 23 33 0 0 chr6 181244535 181244565 -8034989 + AT_rich Low_complexity Low_complexity 1 30 0 203 196 0 18 chr6 181244863 181244919 -8034635 + T-rich Low_complexity Low_complexity 1 55 0 536 232 0 0 chr6 181245077 181245176 -8034378 + AluJ/FLAM SINE Alu 1 99 -213 1601 169 5 58 chr6 181245233 181245611 -8033943 - L1 LINE L1 -1267 4879 4522 2392 83 3 0 chr6 181245630 181245931 -8033623 - AluY SINE Alu -9 302 1 1111 232 56 26 chr6 181246585 181246903 -8032651 + L1ME3 LINE L1 5831 6160 -2 515 284 191 15 chr6 181248637 181248841 -8030713 - MIR SINE MIR 0 262 23 29 47 0 0 chr6 181250592 181250635 -8028919 + AT_rich Low_complexity Low_complexity 1 43 0 2948 181 3 73 chr6 181250690 181251316 -8028238 + MER77 LTR ERV1 1 582 -23 2375 70 33 0 chr6 181252408 181252707 -8026847 + AluY SINE Alu 1 309 -2 380 316 69 52 chr6 181254278 181254509 -8025045 + MIR SINE MIR 1 235 -27 1645 164 73 7 chr6 181255002 181255288 -8024266 - AluJb SINE Alu -7 305 1 306 222 108 39 chr6 181255316 181255519 -8024035 - L1MC5 LINE L1 -192 7769 7553 * 384 218 34 95 chr6 181255518 181255665 -8023889 + L1MC5 LINE L1 7763 7900 -61 366 269 40 101 chr6 181256625 181256952 -8022602 + MLT1J LTR MaLR 3 309 -202 512 234 79 62 chr6 181256986 181257213 -8022341 - L1ME LINE L1 -5770 300 70 3255 159 46 20 chr6 181258121 181258732 -8020822 + LTR48B LTR ERV1 3 629 -15 21 0 0 0 chr6 181259782 181259803 -8019751 + AT_rich Low_complexity Low_complexity 1 21 0 510 103 0 0 chr6 181260251 181260329 -8019225 + (CA)n Simple_repeat Simple_repeat 2 79 0 376 255 144 21 chr6 181262019 181262207 -8017347 - MIR SINE MIR -24 238 28 220 311 74 37 chr6 181262308 181262443 -8017111 - L2 LINE L2 -1 3271 3132 21 0 0 0 chr6 181263390 181263411 -8016143 + AT_rich Low_complexity Low_complexity 1 21 0 480 278 93 0 chr6 181265039 181265201 -8014353 + MIR SINE MIR 86 262 0 2088 122 7 16 chr6 181266019 181266322 -8013232 - AluSx SINE Alu -12 300 1 933 107 0 30 chr6 181266322 181266453 -8013101 - AluSq/x SINE Alu -178 135 9 25 65 0 0 chr6 181266498 181266544 -8013010 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr6 181266832 181266861 -8012693 + AT_rich Low_complexity Low_complexity 1 29 0 1518 195 73 98 chr6 181267211 181267252 -8012302 + LTR40c LTR ERVL 1 42 -423 3339 129 42 44 chr6 181267252 181267780 -8011774 + MER1A DNA MER1_type 1 527 0 1518 195 73 98 chr6 181267780 181268215 -8011339 + LTR40c LTR ERVL 42 465 0 1314 277 97 37 chr6 181268488 181268813 -8010741 + HERVL40 LTR ERVL 940 1244 -4286 372 22 0 0 chr6 181268813 181268858 -8010696 + (CA)n Simple_repeat Simple_repeat 2 46 0 1314 277 97 37 chr6 181268858 181269150 -8010404 + HERVL40 LTR ERVL 1244 1594 -3936 1019 266 41 4 chr6 181269296 181269563 -8009991 + HERVL40 LTR ERVL 2813 3089 -2441 961 242 41 16 chr6 181269614 181269858 -8009696 + HERVL40 LTR ERVL 3180 3429 -2101 2680 207 64 56 chr6 181269875 181270606 -8008948 + HERVL40 LTR ERVL 4772 5508 -22 471 204 19 19 chr6 181270615 181270723 -8008831 + LTR40c LTR ERVL 7 114 -351 * 1508 228 50 21 chr6 181270711 181271093 -8008461 + LTR40c LTR ERVL 59 451 -14 2461 59 0 0 chr6 181271668 181271958 -8007596 + AluY SINE Alu 14 303 -8 28 0 0 0 chr6 181373977 181374005 -7905549 + AT_rich Low_complexity Low_complexity 1 28 0 308 267 175 8 chr6 181374817 181374937 -7904617 + MIR SINE MIR 5 144 -118 313 321 75 0 chr6 181375062 181375168 -7904386 - L2 LINE L2 -22 3291 3178 189 302 0 0 chr6 181376863 181376916 -7902638 + L2 LINE L2 3261 3313 0 395 266 151 66 chr6 181377269 181377634 -7901920 + Charlie8 DNA MER1_type 121 516 -1901 370 366 82 4 chr6 181378039 181378271 -7901283 - MIR SINE MIR 0 262 13 243 184 48 19 chr6 181378492 181378595 -7900959 + (TA)n Simple_repeat Simple_repeat 2 107 0 2300 103 16 49 chr6 181378607 181378995 -7900559 - THE1C LTR MaLR 0 375 1 256 350 159 6 chr6 181379273 181379431 -7900123 + MIR SINE MIR 5 193 -63 1664 237 74 9 chr6 181379431 181380105 -7899449 - L1MEc LINE L1 -2677 3538 2821 411 228 66 0 chr6 181380205 181380372 -7899182 + (TA)n Simple_repeat Simple_repeat 1 178 0 316 119 62 45 chr6 181380471 181380647 -7898907 + (TA)n Simple_repeat Simple_repeat 2 180 0 595 77 33 0 chr6 181380653 181380744 -7898810 - L1MA3 LINE L1 -17 6288 6195 2285 215 61 33 chr6 181380748 181381955 -7897599 - L1MEc LINE L1 -3379 2836 1622 640 279 43 8 chr6 181381967 181382221 -7897333 - L1MEc LINE L1 -6090 306 44 301 354 14 28 chr6 181383334 181383478 -7896076 + MIR3 SINE MIR 58 199 -9 293 316 88 15 chr6 181385152 181385288 -7894266 - L2 LINE L2 0 3313 3168 4513 137 53 6 chr6 181385623 181386448 -7893106 - Tigger3(Golem) DNA MER2_type 0 3029 2166 274 342 38 70 chr6 181387161 181387319 -7892235 + L2 LINE L2 3114 3266 -6 1014 166 91 42 chr6 181387347 181387656 -7891898 + MER33 DNA MER1_type 1 318 -6 279 0 0 0 chr6 181387703 181387734 -7891820 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4859 180 20 4 chr6 181388529 181390275 -7889279 - L1PA16 LINE L1 -244 5922 4154 26 30 0 0 chr6 181391253 181391286 -7888268 + AT_rich Low_complexity Low_complexity 1 33 0 192 97 0 0 chr6 181392111 181392142 -7887412 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 400 284 129 40 chr6 181392822 181393170 -7886384 - HAL1b LINE L1 -710 638 260 317 304 0 62 chr6 181396615 181396727 -7882827 - L2 LINE L2 -9 3263 3159 5518 133 30 7 chr6 181397524 181399214 -7880340 - L1PA16 LINE L1 -11 6155 4435 3315 206 1 14 chr6 181399214 181399976 -7879578 + L1PA16 LINE L1 3689 4440 -1706 602 192 0 8 chr6 181400421 181400551 -7879003 + L1 LINE L1 4634 4762 -1384 295 280 144 8 chr6 181401098 181401216 -7878338 + L2 LINE L2 3139 3272 0 305 259 48 78 chr6 181402443 181402609 -7876945 - MLT1J1 LTR MaLR -283 167 7 21 57 0 0 chr6 181403033 181403068 -7876486 + AT_rich Low_complexity Low_complexity 1 35 0 1825 199 37 45 chr6 181403315 181403807 -7875747 + MLT1D LTR MaLR 8 495 -10 253 258 306 0 chr6 181404822 181404946 -7874608 - MER63A DNA MER1_type -26 184 23 3613 78 2 0 chr6 181404946 181405433 -7874121 - MER41A LTR ERV1 0 554 67 11850 104 30 14 chr6 181405433 181408522 -7871032 - MER41A-int LTR ERV1 -75 5871 1082 3762 128 16 25 chr6 181408512 181409143 -7870411 - MER41A-int LTR ERV1 -5321 625 1 * 4180 71 3 21 chr6 181409205 181409670 -7869884 - MER41A LTR ERV1 0 554 99 2162 116 19 16 chr6 181409670 181409806 -7869748 + AluSx SINE Alu 1 135 -177 2215 119 3 0 chr6 181409806 181410108 -7869446 + AluSg SINE Alu 1 303 -7 2162 116 19 16 chr6 181410108 181410281 -7869273 + AluSx SINE Alu 135 311 -1 4180 71 3 21 chr6 181410281 181410379 -7869175 - MER41A LTR ERV1 -455 99 1 771 59 0 0 chr6 181411261 181411362 -7868192 + (TCCA)n Simple_repeat Simple_repeat 1 101 0 580 252 133 33 chr6 181412438 181412648 -7866906 - MIR SINE MIR -21 241 11 233 381 52 21 chr6 181412765 181413054 -7866500 - L2 LINE L2 -430 2884 2587 1728 144 58 73 chr6 181413425 181413806 -7865748 + THE1C LTR MaLR 1 375 0 10020 129 6 35 chr6 181413808 181415433 -7864121 + THE1C-int LTR MaLR 3 1580 0 1775 170 40 45 chr6 181415433 181415495 -7864059 + THE1C LTR MaLR 1 62 -313 2543 66 0 0 chr6 181415495 181415798 -7863756 + AluY SINE Alu 1 303 -8 1775 170 40 45 chr6 181415798 181416112 -7863442 + THE1C LTR MaLR 62 375 0 2220 89 7 0 chr6 181416294 181416603 -7862951 - AluSp SINE Alu 0 311 1 1919 138 14 3 chr6 181417712 181418002 -7861552 + AluSx SINE Alu 1 293 -19 1866 155 10 3 chr6 181418610 181418906 -7860648 - AluJb SINE Alu -14 298 1 1547 92 5 0 chr6 181419866 181420062 -7859492 - AluY SINE Alu -114 197 1 * 2327 62 24 3 chr6 181420062 181420353 -7859201 - AluSc SINE Alu -12 297 1 250 297 102 34 chr6 181420892 181421010 -7858544 - MIR SINE MIR -71 191 66 317 303 81 39 chr6 181422285 181422753 -7856801 - L1MEc LINE L1 -1644 4485 3998 417 286 196 34 chr6 181422754 181423076 -7856478 - L1MEc LINE L1 -2182 3947 3574 245 337 9 36 chr6 181423114 181423443 -7856111 - L1MEc LINE L1 -3192 2937 2618 466 295 133 45 chr6 181423467 181423843 -7855711 + L1MC/D LINE L1 4643 5051 -1095 787 273 81 21 chr6 181424007 181424392 -7855162 + L1MC/D LINE L1 5254 5661 -2147 402 343 45 30 chr6 181425047 181425312 -7854242 - L1MEc LINE L1 -4737 1573 1305 616 285 69 13 chr6 181425314 181425619 -7853935 - L1MEc LINE L1 -4894 1225 904 384 285 63 63 chr6 181425726 181425947 -7853607 - L1MEc LINE L1 -5367 752 532 258 295 81 47 chr6 181425955 181426104 -7853450 - L1MEc LINE L1 -5650 469 316 22 0 0 0 chr6 181426558 181426580 -7852974 + AT_rich Low_complexity Low_complexity 1 22 0 901 116 36 10 chr6 181426899 181427180 -7852374 + THE1C LTR MaLR 1 375 0 191 283 0 67 chr6 181428336 181428396 -7851158 - L2 LINE L2 -8 3305 3250 1085 225 39 52 chr6 181428560 181428947 -7850607 + MLT1B LTR MaLR 6 396 0 1459 143 30 103 chr6 181428976 181429346 -7850208 - MER61A LTR ERV1 0 343 1 508 306 83 26 chr6 181429470 181429663 -7849891 - L2 LINE L2 -1392 1922 1719 435 235 0 0 chr6 181429741 181429860 -7849694 + (CA)n Simple_repeat Simple_repeat 2 120 0 1410 167 50 25 chr6 181430127 181430450 -7849104 - L1MB5 LINE L1 -14 6160 5830 1942 183 63 0 chr6 181430450 181430848 -7848706 + L1MB5 LINE L1 5391 5813 -361 1153 239 51 16 chr6 181430848 181431248 -7848306 - LTR47A LTR ERVL 0 452 3 1826 201 39 80 chr6 181431251 181431849 -7847705 - MER4B-int LTR ERV1 -683 6075 5503 1320 162 9 0 chr6 181431860 181432070 -7847484 - AluJo SINE Alu -17 295 84 2962 144 33 42 chr6 181432070 181432783 -7846771 - MER4B-int LTR ERV1 -900 5463 4835 277 254 16 0 chr6 181432783 181432846 -7846708 - LTR47A LTR ERVL -118 334 271 1798 123 49 39 chr6 181432930 181433054 -7846500 + AluSp SINE Alu 1 122 -191 2281 56 0 14 chr6 181433054 181433368 -7846186 + AluY SINE Alu 1 310 0 1798 123 49 39 chr6 181433368 181433550 -7846004 + AluSp SINE Alu 122 311 -2 806 255 43 0 chr6 181434067 181434251 -7845303 + MIR SINE MIR 37 228 -34 203 238 0 0 chr6 181434260 181434302 -7845252 + (TTG)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr6 181434926 181434947 -7844607 + AT_rich Low_complexity Low_complexity 1 21 0 236 219 42 10 chr6 181435359 181435455 -7844099 + (TA)n Simple_repeat Simple_repeat 1 99 0 314 334 56 95 chr6 181440010 181440639 -7838915 + HAL1 LINE L1 861 1464 -1043 227 273 266 0 chr6 181441588 181441716 -7837838 - MER5A DNA MER1_type -6 183 22 657 280 158 48 chr6 181442239 181443312 -7836242 - HAL1 LINE L1 -370 2137 947 13304 148 50 13 chr6 181443491 181449145 -7830409 + L1MA3 LINE L1 1850 7722 -2 893 152 13 25 chr6 181449276 181449434 -7830120 + FRAM SINE Alu 1 151 -25 1349 275 42 24 chr6 181449456 181450194 -7829360 + L1M4 LINE L1 3259 4009 -2137 538 256 142 71 chr6 181450194 181450518 -7829036 - MLT1I LTR MaLR -2 407 61 394 256 92 101 chr6 181450520 181450867 -7828687 - L1ME LINE L1 -5453 617 274 276 359 118 13 chr6 181450990 181451297 -7828257 + L2 LINE L2 2778 3113 -159 254 365 88 0 chr6 181452517 181452654 -7826900 + MIR SINE MIR 3 151 -111 2193 88 32 7 chr6 181452655 181452940 -7826614 + AluSq SINE Alu 1 292 -21 190 311 33 0 chr6 181452958 181453019 -7826535 + MIR SINE MIR 145 207 -55 318 106 0 0 chr6 181453030 181453077 -7826477 + (CAT)n Simple_repeat Simple_repeat 2 48 0 262 317 193 14 chr6 181453450 181453595 -7825959 + MIR SINE MIR 55 225 -37 696 347 71 46 chr6 181453653 181454157 -7825397 - L3 LINE CR1 -860 717 201 2468 68 0 3 chr6 181454324 181454634 -7824920 - AluY SINE Alu -2 309 1 833 166 70 62 chr6 181455712 181455915 -7823639 + L1MB4 LINE L1 5920 6127 -53 1774 178 3 3 chr6 181455915 181456202 -7823352 + AluJo SINE Alu 6 292 -20 833 166 70 62 chr6 181456202 181456257 -7823297 + L1MB4 LINE L1 6127 6180 0 872 316 100 32 chr6 181456276 181456937 -7822617 + L1M4 LINE L1 4067 4772 -1374 606 271 87 22 chr6 181457097 181457463 -7822091 - L1ME4a LINE L1 -187 5934 5545 525 91 91 0 chr6 181457582 181457670 -7821884 + MER4A LTR ERV1 1 96 -568 1578 124 11 80 chr6 181457671 181458042 -7821512 + MER4A LTR ERV1 261 664 0 351 299 69 29 chr6 181458066 181458270 -7821284 - L1ME4a LINE L1 -772 5374 5163 243 96 58 0 chr6 181459270 181459322 -7820232 + (TA)n Simple_repeat Simple_repeat 2 56 0 307 338 7 52 chr6 181460249 181460403 -7819151 + L2 LINE L2 3162 3308 -5 285 287 33 47 chr6 181460328 181460478 -7819076 + MIR SINE MIR 110 257 -5 * 238 266 6 58 chr6 181461628 181461801 -7817753 + GA-rich Low_complexity Low_complexity 3 166 0 249 333 0 44 chr6 181461826 181462009 -7817545 + GA-rich Low_complexity Low_complexity 4 178 0 * 301 235 0 82 chr6 181461957 181462140 -7817414 + G-rich Low_complexity Low_complexity 5 172 0 * 365 249 6 45 chr6 181462056 181462233 -7817321 + GA-rich Low_complexity Low_complexity 5 174 0 225 249 21 18 chr6 181462881 181462967 -7816587 - MIR SINE MIR -76 132 45 260 284 23 0 chr6 181465311 181465399 -7814155 - MIR SINE MIR -52 210 121 180 333 83 31 chr6 181469021 181469117 -7810437 + L2 LINE L2 3163 3263 -9 336 338 98 19 chr6 181469170 181469436 -7810118 - L3 LINE CR1 -135 1442 1156 1718 213 55 42 chr6 181469871 181470327 -7809227 - MLT1C LTR MaLR 0 467 6 4065 155 69 29 chr6 181471890 181472639 -7806915 - MER4E LTR ERV1 0 779 1 4461 99 0 0 chr6 181473037 181473591 -7805963 - MER41A LTR ERV1 0 554 1 181 39 0 39 chr6 181476376 181476402 -7803152 - MIR SINE MIR -18 244 220 203 0 37 0 chr6 181477302 181477329 -7802225 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 438 200 50 17 chr6 181477345 181477465 -7802089 + L2 LINE L2 3190 3313 0 1642 220 139 7 chr6 181477475 181477906 -7801648 - MLT1E2 LTR MaLR 0 626 139 509 207 163 15 chr6 181477987 181478122 -7801432 - MLT1E2 LTR MaLR -457 167 13 334 230 71 33 chr6 181478263 181478386 -7801168 - MIR SINE MIR -63 145 30 757 172 86 32 chr6 181478822 181479008 -7800546 - MSTB2 LTR MaLR 0 457 262 25 0 0 0 chr6 181480339 181480364 -7799190 + AT_rich Low_complexity Low_complexity 1 25 0 536 271 37 11 chr6 181480438 181480626 -7798928 - MIR SINE MIR 0 262 70 246 218 18 0 chr6 181481504 181481559 -7797995 + GA-rich Low_complexity Low_complexity 1 56 0 329 294 85 28 chr6 181481887 181482064 -7797490 - L3 LINE CR1 -84 1493 1307 1959 128 116 104 chr6 181482501 181482829 -7796725 + MSTA LTR MaLR 1 337 -91 1713 142 51 17 chr6 181482829 181483125 -7796429 - AluSx SINE Alu -6 306 1 1959 128 116 104 chr6 181483125 181483217 -7796337 + MSTA LTR MaLR 337 426 -2 215 300 7 114 chr6 181484734 181484874 -7794680 - L2 LINE L2 0 3272 3148 182 370 80 0 chr6 181485271 181485371 -7794183 + MIR SINE MIR 42 149 -59 8930 175 51 28 chr6 181486503 181488432 -7791122 + L1M4c LINE L1 2 2077 -4307 1898 144 0 4 chr6 181488432 181488710 -7790844 + AluSx SINE Alu 28 304 -8 8930 175 51 28 chr6 181488710 181488897 -7790657 + L1M4c LINE L1 2077 2258 -4126 3259 131 27 6 chr6 181488937 181489455 -7790099 + L1MA9 LINE L1 5782 6310 -2 2285 161 88 13 chr6 181490494 181490892 -7788662 - MSTA LTR MaLR 0 428 1 2233 110 3 0 chr6 181491907 181492206 -7787348 + AluSq SINE Alu 1 300 -13 186 387 0 0 chr6 181492449 181492511 -7787043 + MIR SINE MIR 32 93 -115 575 327 24 5 chr6 181493639 181493844 -7785710 + MIR SINE MIR 31 239 -23 213 119 167 0 chr6 181495014 181495056 -7784498 - L2 LINE L2 0 3313 3265 2413 81 10 0 chr6 181496101 181496399 -7783155 - AluY SINE Alu -10 301 1 3845 178 40 20 chr6 181496759 181496781 -7782773 - L1MA10 LINE L1 -10 6324 6304 2135 190 53 2 chr6 181496781 181497192 -7782362 + MSTB1 LTR MaLR 1 432 0 3845 178 40 20 chr6 181497192 181497361 -7782193 - L1MA10 LINE L1 -30 6304 6140 2929 177 80 10 chr6 181497361 181497960 -7781594 - LTR9B LTR ERV1 0 644 4 3845 178 40 20 chr6 181497960 181498515 -7781039 - L1MA10 LINE L1 -194 6140 5562 1002 193 10 11 chr6 181498515 181498724 -7780830 - L1M LINE L1 -788 5358 5161 198 0 0 0 chr6 181498971 181498993 -7780561 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 441 362 36 38 chr6 181499489 181500016 -7779538 + L1ME LINE L1 4795 5320 -826 315 350 45 6 chr6 181500095 181500272 -7779282 + L1ME LINE L1 5479 5662 -459 21 36 0 0 chr6 181501137 181501165 -7778389 + AT_rich Low_complexity Low_complexity 1 28 0 238 223 43 64 chr6 181501868 181501962 -7777592 + L2 LINE L2 3185 3276 -37 191 325 57 82 chr6 181503508 181503702 -7775852 + MER5A DNA MER1_type 1 189 0 437 265 92 5 chr6 181504122 181504335 -7775219 + MIR SINE MIR 51 243 -19 250 288 103 69 chr6 181504992 181505225 -7774329 + L2 LINE L2 2723 2963 -351 1350 224 54 92 chr6 181505297 181505463 -7774091 + MLT1C LTR MaLR 6 177 -290 2512 44 0 25 chr6 181505463 181505782 -7773772 + AluY SINE Alu 1 311 0 1350 224 54 92 chr6 181505782 181506093 -7773461 + MLT1C LTR MaLR 177 465 -2 181 339 0 0 chr6 181506278 181506334 -7773220 + L2 LINE L2 3251 3306 -7 320 191 36 119 chr6 181507420 181507588 -7771966 - MLT1I LTR MaLR 0 409 293 745 260 23 0 chr6 181507629 181507802 -7771752 - MLT1J2 LTR MaLR -269 181 5 3837 179 59 17 chr6 181508088 181508850 -7770704 - MER45B DNA AcHobo 0 1040 247 252 252 36 27 chr6 181509205 181509316 -7770238 - L1MC4 LINE L1 -4 8038 7927 2248 110 0 7 chr6 181509624 181509925 -7769629 - AluSg SINE Alu -11 299 1 598 313 115 16 chr6 181509926 181510601 -7768953 - L1ME3A LINE L1 -341 5829 5090 446 323 26 11 chr6 181510763 181511032 -7768522 - L1ME3A LINE L1 -1447 4699 4427 265 234 279 0 chr6 181512102 181512213 -7767341 - MIR SINE MIR 0 262 121 2234 148 9 0 chr6 181512851 181513182 -7766372 - MER1B DNA MER1_type -2 337 4 1132 215 142 52 chr6 181513451 181513889 -7765665 - MLT1D LTR MaLR -2 503 27 348 304 104 7 chr6 181513905 181514040 -7765514 + MIR SINE MIR 81 228 -34 443 124 0 101 chr6 181514141 181514230 -7765324 - MADE1 DNA Mariner 0 80 1 188 67 33 0 chr6 181514902 181514932 -7764622 + (TAAAAA)n Simple_repeat Simple_repeat 1 31 0 382 279 48 30 chr6 181515474 181515770 -7763784 + L1MEc LINE L1 1567 1933 -854 261 251 149 21 chr6 181516054 181516289 -7763265 + L1MEc LINE L1 2546 2810 -3616 28 0 0 0 chr6 181516471 181516499 -7763055 + AT_rich Low_complexity Low_complexity 1 28 0 372 274 91 15 chr6 181516607 181516804 -7762750 + L1MEc LINE L1 3351 3562 -2864 393 296 99 9 chr6 181516817 181517050 -7762504 + L1MEc LINE L1 3645 3898 -2528 2037 194 32 19 chr6 181517227 181517690 -7761864 + L1MD3 LINE L1 7527 7995 0 328 306 28 0 chr6 181517959 181518067 -7761487 - Charlie4 DNA MER1_type -3 1958 1848 2221 116 20 0 chr6 181518409 181518712 -7760842 + AluSx SINE Alu 1 309 -3 336 48 0 0 chr6 181518787 181518829 -7760725 + (CA)n Simple_repeat Simple_repeat 2 43 0 2391 95 0 0 chr6 181518947 181519243 -7760311 + AluSx SINE Alu 1 296 -16 516 297 31 26 chr6 181519576 181519768 -7759786 + MIR SINE MIR 20 212 -50 488 185 171 27 chr6 181519982 181520128 -7759426 + MER20 DNA MER1_type 1 167 -52 228 341 12 0 chr6 181521830 181521912 -7757642 - MIR SINE MIR -69 193 111 5845 113 50 6 chr6 181524755 181526431 -7753123 + L1PA15 LINE L1 4444 6165 0 215 29 88 0 chr6 181528001 181528035 -7751519 + T-rich Low_complexity Low_complexity 4 40 0 225 309 82 10 chr6 181530276 181530373 -7749181 + MIR SINE MIR 105 208 -54 2309 247 198 61 chr6 181531839 181532518 -7747036 + L1MC4a LINE L1 6442 7027 -781 2387 78 3 0 chr6 181532518 181532812 -7746742 - AluY SINE Alu -16 295 1 2309 247 198 61 chr6 181532812 181533251 -7746303 + L1MC4a LINE L1 7027 7713 -95 468 257 29 36 chr6 181533293 181533486 -7746068 - L1M LINE L1 -743 5403 5225 1032 154 55 40 chr6 181533828 181534029 -7745525 + MER3 DNA MER1_type 2 205 -4 28 48 0 0 chr6 181534290 181534332 -7745222 + AT_rich Low_complexity Low_complexity 1 42 0 250 312 111 44 chr6 181534466 181534924 -7744630 - L1M4 LINE L1 -1948 4198 3710 410 339 197 17 chr6 181535235 181535772 -7743782 - L2 LINE L2 -923 2391 1758 25 0 0 0 chr6 181536515 181536540 -7743014 + AT_rich Low_complexity Low_complexity 1 25 0 3386 146 13 17 chr6 181537265 181537793 -7741761 + MER1A DNA MER1_type 2 527 0 813 299 179 28 chr6 181537833 181538539 -7741015 + L2 LINE L2 1365 2176 -1138 675 203 59 0 chr6 181538554 181538707 -7740847 + MER20 DNA MER1_type 1 162 -57 1039 320 75 38 chr6 181538763 181539441 -7740113 + L2 LINE L2 2191 2893 -421 639 306 83 37 chr6 181539437 181539894 -7739660 + L2 LINE L2 2817 3294 -19 * 466 323 6 6 chr6 181540511 181540678 -7738876 - MIR SINE MIR 0 262 96 1739 116 8 0 chr6 181542071 181542313 -7737241 + AluSx SINE Alu 40 283 -29 2327 113 0 0 chr6 181542846 181543156 -7736398 + AluSq SINE Alu 1 310 -3 4651 122 14 15 chr6 181543695 181543821 -7735733 + L1MA7 LINE L1 4585 4710 -1581 2185 142 0 0 chr6 181543821 181544132 -7735422 + AluSx SINE Alu 1 311 -1 4651 122 14 15 chr6 181544132 181544512 -7735042 + L1MA7 LINE L1 4710 5089 -1202 183 42 0 0 chr6 181544512 181544536 -7735018 + (TTG)n Simple_repeat Simple_repeat 1 24 0 4651 122 14 15 chr6 181544536 181544934 -7734620 + L1MA7 LINE L1 5089 5492 -799 2322 117 61 17 chr6 181544934 181545293 -7734261 + THE1C LTR MaLR 1 375 0 4651 122 14 15 chr6 181545293 181545630 -7733924 + L1MA7 LINE L1 5492 5828 -463 916 144 0 0 chr6 181545631 181545763 -7733791 + FLAM_C SINE Alu 1 132 -11 2654 159 21 15 chr6 181545764 181546229 -7733325 + L1MA7 LINE L1 5815 6282 -9 296 266 103 31 chr6 181546315 181546483 -7733071 - LTR16A LTR ERVL -214 236 59 415 176 14 0 chr6 181546644 181546718 -7732836 + U13 snRNA snRNA 1 75 -29 1998 176 85 10 chr6 181546808 181547206 -7732348 - MSTA LTR MaLR 0 428 1 243 0 0 0 chr6 181548114 181548141 -7731413 + (A)n Simple_repeat Simple_repeat 1 27 0 189 255 78 0 chr6 181548154 181548205 -7731349 + L2 LINE L2 3255 3309 -4 1480 157 51 41 chr6 181548812 181549105 -7730449 + AluJo SINE Alu 1 296 -16 229 324 114 33 chr6 181550509 181550719 -7728835 - L2 LINE L2 -159 3113 2887 329 331 14 7 chr6 181552166 181552308 -7727246 + GA-rich Low_complexity Low_complexity 4 146 0 559 327 92 71 chr6 181553317 181553899 -7725655 - L2 LINE L2 -652 2662 2094 2373 149 37 53 chr6 181553899 181554335 -7725219 + MSTB1 LTR MaLR 4 432 0 559 327 92 71 chr6 181554335 181554914 -7724640 - L2 LINE L2 -1220 2094 1477 2482 118 128 8 chr6 181556458 181556840 -7722714 - MSTA LTR MaLR 0 428 1 256 317 109 10 chr6 181558693 181558794 -7720760 + L2 LINE L2 3157 3267 -5 205 329 85 0 chr6 181558805 181558921 -7720633 + MIR SINE MIR 55 180 -62 537 228 5 0 chr6 181559414 181559835 -7719719 + (CA)n Simple_repeat Simple_repeat 1 423 0 1550 305 97 31 chr6 181565299 181566384 -7713170 + L2 LINE L2 2141 3298 -15 1964 88 4 11 chr6 181568507 181568779 -7710775 + AluY SINE Alu 41 310 -1 730 188 0 0 chr6 181570211 181570349 -7709205 - L1 LINE L1 -1853 4293 4156 * 3221 105 17 129 chr6 181570341 181570618 -7708936 + L1PB1 LINE L1 5586 5754 -397 216 0 0 0 chr6 181570618 181570642 -7708912 + (TA)n Simple_repeat Simple_repeat 1 24 0 3221 105 17 129 chr6 181570642 181571000 -7708554 + L1PB1 LINE L1 5754 6150 -1 35 0 0 0 chr6 181571000 181571035 -7708519 + AT_rich Low_complexity Low_complexity 1 35 0 304 245 140 0 chr6 181571561 181571674 -7707880 + MIR SINE MIR 32 162 -94 184 238 0 0 chr6 181572055 181572097 -7707457 - L2 LINE L2 -76 3237 3196 2217 115 6 10 chr6 181572749 181573062 -7706492 + AluSx SINE Alu 1 312 0 343 333 0 0 chr6 181573234 181573354 -7706200 - MIR3 SINE MIR -18 190 71 2138 128 3 28 chr6 181575350 181575670 -7703884 - AluSx SINE Alu 0 312 1 743 260 176 21 chr6 181576010 181576510 -7703044 - L2 LINE L2 -3 3310 2749 1472 227 40 46 chr6 181576514 181576968 -7702586 - MLT1C LTR MaLR -10 457 7 336 279 67 28 chr6 181576985 181577164 -7702390 - L2 LINE L2 -570 2744 2559 22 0 0 0 chr6 181577666 181577688 -7701866 + AT_rich Low_complexity Low_complexity 1 22 0 2488 58 7 0 chr6 181578211 181578505 -7701049 + AluY SINE Alu 2 297 -14 322 313 39 22 chr6 181578765 181578944 -7700610 - MIR SINE MIR -79 183 2 1509 49 0 0 chr6 181580979 181581163 -7698391 - L1PA8 LINE L1 0 6172 5989 1753 182 33 0 chr6 181581360 181581690 -7697864 - MER2 DNA MER2_type -2 342 2 1770 142 3 34 chr6 181582494 181582790 -7696764 + AluJo SINE Alu 1 287 -25 224 241 0 0 chr6 181584839 181584893 -7694661 + (TGAA)n Simple_repeat Simple_repeat 1 54 0 303 235 49 39 chr6 181585214 181585316 -7694238 + MIR SINE MIR 136 238 -24 475 302 23 6 chr6 181586350 181586522 -7693032 - MIR SINE MIR -11 251 77 190 214 0 0 chr6 181587043 181587085 -7692469 - L2 LINE L2 -2 3311 3270 2373 77 7 7 chr6 181587853 181588153 -7691401 + AluY SINE Alu 1 300 -11 225 128 0 0 chr6 181589481 181589528 -7690026 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 * 1338 38 0 22 chr6 181589517 181589557 -7689997 + (GAAA)n Simple_repeat Simple_repeat 1 219 0 1338 38 0 22 chr6 181589557 181589741 -7689813 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 24 32 0 0 chr6 181589897 181589928 -7689626 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr6 181590004 181590026 -7689528 + AT_rich Low_complexity Low_complexity 1 22 0 1724 166 10 23 chr6 181590105 181590407 -7689147 - AluJo SINE Alu -14 298 1 297 243 0 14 chr6 181590540 181590610 -7688944 - L1MC/D LINE L1 -2271 5537 5469 2343 127 65 32 chr6 181590615 181591132 -7688422 - MLT2A2 LTR ERVL 0 554 1 322 283 62 43 chr6 181591454 181591712 -7687842 - L1MC/D LINE L1 -1440 4706 4444 2385 104 0 0 chr6 181591762 181592071 -7687483 - AluSg SINE Alu -1 309 1 572 288 113 56 chr6 181592371 181592624 -7686930 - L1MC/D LINE L1 -2100 4046 3809 2806 7 0 7 chr6 181592624 181592927 -7686627 - AluYa5 SINE Alu -10 301 1 572 288 113 56 chr6 181592927 181593098 -7686456 - L1MC/D LINE L1 -2337 3809 3649 180 77 0 0 chr6 181593098 181593124 -7686430 + (TTG)n Simple_repeat Simple_repeat 2 27 0 572 288 113 56 chr6 181593124 181593744 -7685810 - L1MC/D LINE L1 -2497 3649 2942 5818 45 0 1 chr6 181593766 181594460 -7685094 - L1PA5 LINE L1 -1 6153 5461 2093 136 0 43 chr6 181594584 181594908 -7684646 - AluSx SINE Alu -2 310 1 256 280 61 32 chr6 181594937 181595491 -7684063 - HAL1b LINE L1 -442 906 304 228 67 0 0 chr6 181595720 181595750 -7683804 + (TTCC)n Simple_repeat Simple_repeat 2 31 0 2089 154 0 3 chr6 181595750 181596062 -7683492 - AluJb SINE Alu -1 311 1 386 263 47 89 chr6 181596243 181596307 -7683247 - HAL1b LINE L1 -1038 310 245 1810 196 25 3 chr6 181596307 181596660 -7682894 + MLT1A1 LTR MaLR 1 361 -4 386 263 47 89 chr6 181596660 181596831 -7682723 - HAL1b LINE L1 -1103 245 85 2817 76 5 0 chr6 181596844 181597212 -7682342 - L1PB1 LINE L1 0 6151 5782 293 282 0 0 chr6 181597212 181597297 -7682257 - L1MC4 LINE L1 -1342 6700 6616 497 197 0 8 chr6 181597307 181597434 -7682120 + (TA)n Simple_repeat Simple_repeat 1 126 0 5787 172 5 3 chr6 181597434 181599116 -7680438 - L1P5 LINE L1 -360 5791 4107 1317 215 42 72 chr6 181600263 181600649 -7678905 - MLT1A2 LTR MaLR 0 374 1 2354 104 0 3 chr6 181602163 181602472 -7677082 + AluSq SINE Alu 1 308 -5 2890 7 0 3 chr6 181603253 181603562 -7675992 + AluYb8 SINE Alu 1 308 -10 2118 137 3 0 chr6 181603566 181603859 -7675695 + AluSq SINE Alu 1 294 -19 25 51 0 0 chr6 181604271 181604310 -7675244 + AT_rich Low_complexity Low_complexity 1 39 0 201 328 145 21 chr6 181604429 181605267 -7674287 + L2 LINE L2 2287 3232 -40 393 142 0 74 chr6 181606519 181606667 -7672887 + (TATATG)n Simple_repeat Simple_repeat 1 137 0 245 151 38 0 chr6 181606693 181606746 -7672808 + L1MC4 LINE L1 6649 6703 -1339 219 69 0 0 chr6 181606749 181606778 -7672776 + (TG)n Simple_repeat Simple_repeat 2 30 0 30 27 0 0 chr6 181609202 181609239 -7670315 + AT_rich Low_complexity Low_complexity 1 37 0 2241 98 3 40 chr6 181609569 181609894 -7669660 - AluSp SINE Alu 0 313 1 414 0 0 0 chr6 181610013 181610059 -7669495 + (CA)n Simple_repeat Simple_repeat 1 46 0 374 268 50 28 chr6 181610275 181610454 -7669100 + MIR SINE MIR 62 244 -18 2008 116 53 0 chr6 181612136 181612301 -7667253 - AluSx SINE Alu -12 300 112 269 26 26 0 chr6 181612301 181612339 -7667215 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2008 116 53 0 chr6 181612339 181612458 -7667096 - AluSx SINE Alu -200 112 1 26 50 0 0 chr6 181613894 181613934 -7665620 + AT_rich Low_complexity Low_complexity 1 40 0 457 196 7 118 chr6 181614682 181614835 -7664719 + MIR SINE MIR 102 237 -25 380 167 28 0 chr6 181614844 181614916 -7664638 - MER116 DNA Mariner 0 80 7 191 313 75 0 chr6 181615568 181615635 -7663919 + MIR SINE MIR 158 229 -33 2262 81 0 27 chr6 181616033 181616330 -7663224 - AluSg1 SINE Alu -20 289 1 546 342 41 43 chr6 181617941 181618456 -7661098 + L1ME LINE L1 5310 5823 -298 271 298 92 60 chr6 181618531 181618813 -7660741 + L2 LINE L2 2916 3206 -107 2313 89 10 0 chr6 181619334 181619637 -7659917 + AluSx SINE Alu 1 306 -6 207 88 0 0 chr6 181621970 181622004 -7657550 + (T)n Simple_repeat Simple_repeat 1 34 0 1807 152 28 0 chr6 181622784 181623074 -7656480 + AluJb SINE Alu 1 298 -14 2237 117 0 22 chr6 181623461 181623778 -7655776 + AluSx SINE Alu 1 310 -2 411 322 34 0 chr6 181625769 181625915 -7653639 + MIR SINE MIR 56 206 -56 307 248 46 30 chr6 181626584 181626709 -7652845 - MIR SINE MIR -2 206 72 2295 129 0 0 chr6 181628118 181628420 -7651134 + AluSx SINE Alu 1 302 -10 1955 161 3 10 chr6 181632479 181632789 -7646765 - AluJo SINE Alu -3 309 2 231 88 0 0 chr6 181632790 181632824 -7646730 + (TC)n Simple_repeat Simple_repeat 1 34 0 213 39 0 0 chr6 181632835 181632861 -7646693 + (TA)n Simple_repeat Simple_repeat 1 26 0 2233 103 34 0 chr6 181635982 181636274 -7643280 + AluSq SINE Alu 1 302 -11 2410 90 3 0 chr6 181636508 181636807 -7642747 - AluSp SINE Alu -13 300 1 392 285 0 76 chr6 181637111 181637152 -7642402 + MIR SINE MIR 15 58 -204 2317 106 0 10 chr6 181637152 181637463 -7642091 + AluSx SINE Alu 1 308 -4 392 285 0 76 chr6 181637463 181637565 -7641989 + MIR SINE MIR 58 147 -115 394 311 33 28 chr6 181638367 181638547 -7641007 + MIR SINE MIR 1 181 -81 2091 126 3 14 chr6 181638929 181639214 -7640340 + AluSq SINE Alu 1 287 -26 525 32 0 0 chr6 181639214 181639277 -7640277 + (TA)n Simple_repeat Simple_repeat 2 64 0 180 0 0 0 chr6 181639276 181639296 -7640258 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 2091 126 3 14 chr6 181639277 181639304 -7640250 + AluSq SINE Alu 287 291 -22 504 313 183 18 chr6 181641240 181641911 -7637643 + L2 LINE L2 2058 2839 -475 453 276 130 56 chr6 181642010 181642332 -7637222 + L2 LINE L2 2956 3301 -12 2135 108 0 0 chr6 181642332 181642609 -7636945 + AluSx SINE Alu 1 277 -35 755 228 26 26 chr6 181643380 181643569 -7635985 + MER5A DNA MER1_type 1 189 0 25 0 0 0 chr6 181643906 181643931 -7635623 + AT_rich Low_complexity Low_complexity 1 25 0 196 227 45 0 chr6 181645337 181645381 -7634173 + MIR SINE MIR 104 149 -59 1912 122 73 0 chr6 181645506 181645794 -7633760 + AluSx SINE Alu 1 309 -3 303 205 0 9 chr6 181646653 181646717 -7632837 + MSTB LTR MaLR 1 61 -367 318 194 0 9 chr6 181646717 181646781 -7632773 + MSTB LTR MaLR 1 61 -367 303 196 0 0 chr6 181646781 181646837 -7632717 + MSTB LTR MaLR 1 56 -370 2230 158 73 0 chr6 181646845 181647243 -7632311 + MSTA LTR MaLR 1 427 -1 3511 123 68 35 chr6 181647588 181648181 -7631373 - LTR9 LTR ERV1 0 612 1 278 349 62 7 chr6 181648400 181648546 -7631008 + L3 LINE CR1 1417 1570 -7 1990 148 0 10 chr6 181648592 181648890 -7630664 + AluSx SINE Alu 3 297 -15 539 258 13 31 chr6 181649527 181649686 -7629868 + MIR3 SINE MIR 31 186 -22 2529 161 9 2 chr6 181650433 181650868 -7628686 - L1PA15 LINE L1 -5 6160 5723 1731 169 29 4 chr6 181651669 181651947 -7627607 + AluJb SINE Alu 1 285 -27 22 0 0 0 chr6 181652702 181652724 -7626830 + AT_rich Low_complexity Low_complexity 1 22 0 351 256 23 8 chr6 181652731 181652860 -7626694 + L1ME2 LINE L1 5348 5478 -686 1031 239 126 67 chr6 181652920 181653097 -7626457 + L1ME2 LINE L1 5616 5781 -383 1951 161 3 0 chr6 181653097 181653389 -7626165 + AluSq SINE Alu 5 297 -16 1031 239 126 67 chr6 181653389 181653718 -7625836 + L1ME2 LINE L1 5781 6152 -12 302 233 19 48 chr6 181654063 181654166 -7625388 - L3 LINE CR1 -11 1566 1467 1810 217 42 13 chr6 181654664 181655116 -7624438 + MLT1C LTR MaLR 1 465 -2 1770 170 3 10 chr6 181657065 181657354 -7622200 - AluJb SINE Alu -25 287 1 321 281 10 0 chr6 181657543 181657639 -7621915 - MER117 DNA MER1_type -45 152 56 269 311 37 15 chr6 181658315 181658450 -7621104 - MLT1L LTR MaLR -331 284 147 504 360 91 45 chr6 181659713 181660308 -7619246 - L1ME4a LINE L1 -237 5884 5263 236 254 63 0 chr6 181660415 181660478 -7619076 - MIR SINE MIR -79 183 117 1139 256 123 5 chr6 181662187 181662594 -7616960 - MLT1C LTR MaLR -7 460 6 2304 105 7 0 chr6 181663820 181664116 -7615438 + AluSx SINE Alu 1 298 -14 343 301 81 0 chr6 181664702 181664825 -7614729 - LTR16B LTR ERVL -142 322 190 2060 124 7 3 chr6 181665218 181665525 -7614029 + AluSx SINE Alu 1 308 0 535 220 40 27 chr6 181667661 181667811 -7611743 - MER103 DNA DNA -7 159 8 2198 185 86 15 chr6 181667839 181668303 -7611251 + MLT1D LTR MaLR 1 497 -8 1921 207 36 39 chr6 181669502 181669970 -7609584 - MLT1C LTR MaLR 0 467 1 1801 161 37 0 chr6 181670044 181670340 -7609214 + AluJb SINE Alu 1 306 0 428 293 141 15 chr6 181670345 181670615 -7608939 + MLT1J LTR MaLR 151 454 -57 1097 165 38 9 chr6 181670616 181670828 -7608726 + MER20 DNA MER1_type 1 218 -1 271 239 109 54 chr6 181671333 181671425 -7608129 + L2 LINE L2 3203 3299 -14 21 0 0 0 chr6 181671670 181671691 -7607863 + AT_rich Low_complexity Low_complexity 1 21 0 1666 142 76 0 chr6 181671769 181672044 -7607510 + AluJb SINE Alu 1 296 -16 389 299 87 19 chr6 181672496 181672703 -7606851 - MIR SINE MIR -1 261 41 288 130 0 0 chr6 181673423 181673469 -7606085 + (T)n Simple_repeat Simple_repeat 1 46 0 1738 113 0 0 chr6 181673471 181673718 -7605836 - AluSx SINE Alu -65 247 1 498 136 0 0 chr6 181675194 181675275 -7604279 + (TTC)n Simple_repeat Simple_repeat 2 82 0 184 264 0 38 chr6 181676131 181676184 -7603370 - MIR SINE MIR -113 149 99 205 258 0 32 chr6 181676339 181676401 -7603153 + (CCCCG)n Simple_repeat Simple_repeat 5 64 0 492 197 0 16 chr6 181676463 181676646 -7602908 + (CA)n Simple_repeat Simple_repeat 1 180 0 467 224 7 7 chr6 181676659 181676963 -7602591 + (CA)n Simple_repeat Simple_repeat 1 304 0 1961 116 0 3 chr6 181677243 181677578 -7601976 + AluSx SINE Alu 2 335 0 2149 99 0 0 chr6 181677694 181677986 -7601568 - AluSx SINE Alu -20 292 1 200 371 83 8 chr6 181679532 181679664 -7599890 + L3 LINE CR1 514 655 -922 321 26 0 0 chr6 181679678 181679716 -7599838 + (TA)n Simple_repeat Simple_repeat 2 39 0 1830 162 3 0 chr6 181679729 181680032 -7599522 - AluJo SINE Alu -8 304 1 4136 224 53 23 chr6 181680090 181681226 -7598328 - L1MC3 LINE L1 -254 7531 6362 343 320 138 24 chr6 181681292 181681589 -7597965 + L3 LINE CR1 736 1066 -511 1981 138 0 25 chr6 181681632 181681951 -7597603 + AluSx SINE Alu 1 311 -1 190 305 74 11 chr6 181682466 181682561 -7596993 + L3 LINE CR1 1312 1412 -165 27 29 0 0 chr6 181683254 181683288 -7596266 + AT_rich Low_complexity Low_complexity 1 34 0 1746 128 3 77 chr6 181683290 181683627 -7595927 + AluSq SINE Alu 1 312 -1 1608 162 0 20 chr6 181683689 181683991 -7595563 - AluJo SINE Alu -13 299 4 521 363 6 0 chr6 181683992 181684149 -7595405 + MIR3 SINE MIR 40 197 -11 312 282 120 8 chr6 181685577 181685694 -7593860 - MIR SINE MIR -98 164 35 1256 162 0 18 chr6 181685928 181686156 -7593398 - L1MA5A LINE L1 -5 6292 6069 274 327 28 9 chr6 181686856 181686963 -7592591 + MIR SINE MIR 39 147 -115 192 40 0 0 chr6 181687064 181687089 -7592465 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 207 231 27 82 chr6 181689898 181690045 -7589509 + CT-rich Low_complexity Low_complexity 4 142 0 258 32 0 0 chr6 181690677 181690708 -7588846 + (TCC)n Simple_repeat Simple_repeat 3 33 0 2019 132 0 0 chr6 181691499 181691802 -7587752 + AluSc SINE Alu 1 303 -6 301 222 74 12 chr6 181691899 181691980 -7587574 + MIR SINE MIR 110 195 -67 2359 93 0 0 chr6 181692130 181692442 -7587112 - AluSq SINE Alu -1 312 1 469 324 21 62 chr6 181692599 181692889 -7586665 - L2 LINE L2 0 3272 2995 741 215 84 11 chr6 181692942 181693133 -7586421 + MER20 DNA MER1_type 15 219 0 225 311 48 0 chr6 181694418 181694521 -7585033 + MIR3 SINE MIR 98 205 -3 835 133 0 0 chr6 181694759 181694887 -7584667 + AluSc SINE Alu 173 300 -9 2373 100 0 0 chr6 181695472 181695782 -7583772 - AluSx SINE Alu -2 310 1 315 343 112 0 chr6 181696281 181696450 -7583104 - MIR SINE MIR -65 197 10 596 300 64 0 chr6 181696451 181696671 -7582883 + Charlie1 DNA MER1_type 1 234 -2527 541 211 86 0 chr6 181696659 181696787 -7582767 + Charlie1 DNA MER1_type 2620 2758 -3 * 1703 105 4 4 chr6 181697741 181697998 -7581556 - AluSq SINE Alu -2 311 55 1144 226 86 66 chr6 181698041 181698426 -7581128 + MLT1C LTR MaLR 9 407 -60 1378 191 10 28 chr6 181698426 181698734 -7580820 + AluJb SINE Alu 1 303 0 1144 226 86 66 chr6 181698734 181698789 -7580765 + MLT1C LTR MaLR 407 459 -8 441 0 0 0 chr6 181699120 181699169 -7580385 + (TTA)n Simple_repeat Simple_repeat 2 50 0 1883 112 7 36 chr6 181700231 181700366 -7579188 + AluSx SINE Alu 1 138 -174 2106 109 13 0 chr6 181700366 181700669 -7578885 + AluSq SINE Alu 1 307 -6 1883 112 7 36 chr6 181700669 181700838 -7578716 + AluSx SINE Alu 138 296 -16 27 62 0 0 chr6 181700904 181700952 -7578602 + AT_rich Low_complexity Low_complexity 1 48 0 377 230 128 74 chr6 181701942 181701990 -7577564 - MIR SINE MIR -61 201 157 2065 108 10 0 chr6 181701990 181702287 -7577267 - AluSp SINE Alu -13 300 1 377 230 128 74 chr6 181702287 181702386 -7577168 - MIR SINE MIR -105 157 46 549 231 35 82 chr6 181702491 181702653 -7576901 + MER106B DNA MER1_type 25 193 -866 1806 140 3 35 chr6 181702653 181702967 -7576587 + AluJb SINE Alu 1 304 -8 549 231 35 82 chr6 181702967 181703022 -7576532 + MER106B DNA MER1_type 193 1059 0 2191 121 36 36 chr6 181703153 181703517 -7576037 + THE1B LTR MaLR 1 364 0 697 239 56 10 chr6 181703968 181704165 -7575389 - MER3 DNA MER1_type -3 206 1 190 364 61 0 chr6 181704225 181704324 -7575230 - L2 LINE L2 -5 3308 3204 601 248 54 7 chr6 181704447 181704596 -7574958 + MIR SINE MIR 92 247 -15 531 257 88 7 chr6 181704845 181704993 -7574561 - MIR3 SINE MIR -6 202 43 1706 163 3 3 chr6 181705171 181705453 -7574101 + AluJb SINE Alu 1 282 -30 2240 76 7 0 chr6 181705453 181705754 -7573800 + AluSp SINE Alu 1 303 -10 2125 117 0 0 chr6 181706824 181707123 -7572431 - AluSg SINE Alu -11 299 1 324 275 75 75 chr6 181709518 181709758 -7569796 + MLT1K LTR MaLR 308 547 -41 1557 120 35 19 chr6 181709759 181710039 -7569515 + AluSx SINE Alu 35 312 0 2266 100 3 0 chr6 181710078 181710389 -7569165 + AluSp SINE Alu 1 312 -1 302 285 66 31 chr6 181710588 181710757 -7568797 - MIR SINE MIR -56 206 39 209 189 0 0 chr6 181710778 181710815 -7568739 + (CA)n Simple_repeat Simple_repeat 2 38 0 2046 102 0 0 chr6 181710844 181711147 -7568407 + AluSg SINE Alu 1 303 0 189 0 0 0 chr6 181712206 181712227 -7567327 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 313 264 80 6 chr6 181712670 181712833 -7566721 - L1M3 LINE L1 -749 5431 5257 400 323 26 11 chr6 181713140 181713409 -7566145 - L1M3 LINE L1 -1447 4699 4427 288 234 279 0 chr6 181714479 181714590 -7564964 - MIR SINE MIR 0 262 121 2277 148 9 0 chr6 181715228 181715559 -7563995 - MER1B DNA MER1_type -2 337 4 1260 227 156 14 chr6 181715828 181716246 -7563308 - MLT1D LTR MaLR -2 503 27 369 304 104 7 chr6 181716262 181716397 -7563157 + MIR SINE MIR 81 228 -34 421 135 0 101 chr6 181716498 181716587 -7562967 - MADE1 DNA Mariner 0 80 1 188 67 33 0 chr6 181717259 181717289 -7562265 + (TAAAAA)n Simple_repeat Simple_repeat 1 31 0 358 281 48 30 chr6 181717831 181718127 -7561427 + L1MEc LINE L1 1567 1933 -854 225 251 149 21 chr6 181718413 181718648 -7560906 + L1MEc LINE L1 2546 2810 -3616 28 0 0 0 chr6 181718830 181718858 -7560696 + AT_rich Low_complexity Low_complexity 1 28 0 473 283 94 21 chr6 181718941 181719174 -7560380 + L1MEc LINE L1 3325 3574 -2852 345 296 99 9 chr6 181719176 181719409 -7560145 + L1MEc LINE L1 3645 3898 -2528 2012 194 32 19 chr6 181719586 181720049 -7559505 + L1MD3 LINE L1 7527 7995 0 338 306 28 0 chr6 181720318 181720426 -7559128 - Charlie4 DNA MER1_type -3 1958 1848 2074 122 20 0 chr6 181720768 181721072 -7558482 + AluSx SINE Alu 1 310 -2 342 67 0 0 chr6 181721141 181721186 -7558368 + (CA)n Simple_repeat Simple_repeat 2 46 0 2277 95 0 0 chr6 181721302 181721598 -7557956 + AluSx SINE Alu 1 296 -16 530 297 31 26 chr6 181721931 181722123 -7557431 + MIR SINE MIR 20 212 -50 508 192 171 27 chr6 181722337 181722483 -7557071 + MER20 DNA MER1_type 1 167 -52 209 341 12 0 chr6 181724185 181724267 -7555287 - MIR SINE MIR -69 193 111 180 0 0 0 chr6 181725777 181725797 -7553757 + (G)n Simple_repeat Simple_repeat 1 20 0 282 261 54 0 chr6 181726989 181727081 -7552473 + MIR SINE MIR 99 195 -67 23 33 0 0 chr6 181727643 181727673 -7551881 + AT_rich Low_complexity Low_complexity 1 30 0 850 156 32 27 chr6 181731427 181731613 -7547941 + MER53 DNA DNA 1 187 -2 242 292 135 28 chr6 181732135 181732313 -7547241 - L2 LINE L2 -192 3080 2884 359 247 128 32 chr6 181732648 181732867 -7546687 + L2 LINE L2 2855 3094 -178 316 299 150 19 chr6 181732972 181733179 -7546375 + L2 LINE L2 2174 2407 -907 1666 210 60 58 chr6 181733399 181733903 -7545651 - MLT1D LTR MaLR 0 505 1 249 242 65 0 chr6 181734291 181734353 -7545201 + L2 LINE L2 3201 3266 -47 286 294 22 0 chr6 181735845 181735937 -7543617 + MIR SINE MIR 22 115 -147 74 57 0 0 chr6 181736077 181736200 -7543354 + AT_rich Low_complexity Low_complexity 1 123 0 215 263 152 0 chr6 181737780 181737879 -7541675 - MIR SINE MIR -130 132 19 297 294 53 40 chr6 181738225 181738453 -7541101 - L1MC/D LINE L1 -1952 5856 5626 313 257 14 0 chr6 181739142 181739216 -7540338 + MER5B DNA MER1_type 4 78 -100 247 188 159 0 chr6 181739480 181739549 -7540005 - MER5B DNA MER1_type -98 80 1 2238 122 0 0 chr6 181740076 181740387 -7539167 - AluSx SINE Alu -1 311 1 28 29 0 0 chr6 181740704 181740739 -7538815 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 181740838 181740859 -7538695 + AT_rich Low_complexity Low_complexity 1 21 0 231 294 55 37 chr6 181741558 181741667 -7537887 + MIR SINE MIR 14 124 -84 1840 129 22 75 chr6 181745010 181745328 -7534226 + AluSx SINE Alu 1 301 -11 1542 166 66 51 chr6 181746621 181746971 -7532583 - MLT1B LTR MaLR -34 356 2 548 240 26 62 chr6 181748146 181748338 -7531216 - MIR SINE MIR 0 262 78 195 222 0 0 chr6 181749293 181749338 -7530216 + (CA)n Simple_repeat Simple_repeat 2 46 0 714 298 124 9 chr6 181749613 181750039 -7529515 + L1ME4a LINE L1 5618 6092 -29 1516 89 79 5 chr6 181750941 181751155 -7528399 + MER30 DNA MER1_type 1 230 0 347 325 40 0 chr6 181751456 181751582 -7527972 - L3b LINE CR1 -175 1408 1278 335 304 48 18 chr6 181751653 181751821 -7527733 - MIR SINE MIR -49 213 41 342 0 0 0 chr6 181752560 181752598 -7526956 + (GGA)n Simple_repeat Simple_repeat 3 40 0 185 284 15 30 chr6 181753291 181753358 -7526196 - L2 LINE L2 -2 3311 3246 243 0 0 0 chr6 181754526 181754553 -7525001 + (T)n Simple_repeat Simple_repeat 1 27 0 781 261 78 71 chr6 181755071 181755496 -7524058 + MLT1J LTR MaLR 77 504 -7 26 0 0 0 chr6 181756202 181756228 -7523326 + AT_rich Low_complexity Low_complexity 1 26 0 1681 156 7 33 chr6 181756240 181756541 -7523013 + AluJb SINE Alu 8 300 -12 1072 153 12 0 chr6 181757297 181757460 -7522094 + FRAM SINE Alu 2 166 -10 295 383 0 0 chr6 181757719 181757839 -7521715 - MIR SINE MIR -110 152 33 243 0 0 0 chr6 181758420 181758447 -7521107 + (A)n Simple_repeat Simple_repeat 1 27 0 284 277 84 17 chr6 181759499 181759618 -7519936 - MIR SINE MIR -51 211 85 381 133 0 0 chr6 181763188 181763263 -7516291 + (CA)n Simple_repeat Simple_repeat 2 76 0 220 316 21 21 chr6 181768283 181768378 -7511176 + MIR3 SINE MIR 90 184 -24 21 0 0 0 chr6 181769917 181769938 -7509616 + AT_rich Low_complexity Low_complexity 1 21 0 35 24 0 0 chr6 181770451 181770493 -7509061 + AT_rich Low_complexity Low_complexity 1 42 0 1929 103 0 0 chr6 181770696 181770948 -7508606 - AluSx SINE Alu 0 312 61 192 250 0 0 chr6 181771161 181771225 -7508329 + CT-rich Low_complexity Low_complexity 2 65 0 247 214 14 29 chr6 181771657 181771727 -7507827 + CT-rich Low_complexity Low_complexity 4 72 0 266 236 137 43 chr6 181773236 181773397 -7506157 + MIR SINE MIR 77 252 -10 186 71 0 0 chr6 181773584 181773612 -7505942 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 846 149 0 17 chr6 181773612 181773787 -7505767 + (TAGA)n Simple_repeat Simple_repeat 1 172 0 2470 64 0 19 chr6 181774247 181774561 -7504993 - AluY SINE Alu 0 311 4 545 261 85 15 chr6 181775223 181775422 -7504132 - MIR SINE MIR -30 232 20 1671 147 14 75 chr6 181775514 181775881 -7503673 - MER4A LTR ERV1 -1 663 261 664 101 0 10 chr6 181775881 181775980 -7503574 - MER4A LTR ERV1 -566 98 1 530 302 4 43 chr6 181776198 181776430 -7503124 - MIR SINE MIR -32 230 8 220 303 25 8 chr6 181776636 181776755 -7502799 + (TA)n Simple_repeat Simple_repeat 1 121 0 21 0 0 0 chr6 181777008 181777029 -7502525 + AT_rich Low_complexity Low_complexity 1 21 0 365 226 0 0 chr6 181777578 181777640 -7501914 + MER81 DNA DNA 1 62 -52 325 248 0 22 chr6 181779162 181779299 -7500255 + (TATG)n Simple_repeat Simple_repeat 3 136 0 2115 98 3 41 chr6 181779934 181780253 -7499301 + AluSx SINE Alu 1 308 0 2058 187 44 0 chr6 181781533 181781939 -7497615 + L1P LINE L1 4124 4547 -1599 275 280 261 8 chr6 181782206 181782401 -7497153 - MIR SINE MIR -13 249 12 2186 127 0 3 chr6 181784099 181784399 -7495155 - AluSx SINE Alu -13 299 1 2466 109 0 0 chr6 181785623 181785935 -7493619 - AluSx SINE Alu 0 312 1 236 349 112 0 chr6 181786434 181786603 -7492951 - MIR SINE MIR -65 197 10 555 304 64 0 chr6 181786604 181786824 -7492730 + Charlie1 DNA MER1_type 1 234 -2527 542 211 86 0 chr6 181786812 181786940 -7492614 + Charlie1 DNA MER1_type 2620 2758 -3 * 1798 105 4 4 chr6 181787894 181788151 -7491403 - AluSq SINE Alu -2 311 55 1122 213 93 72 chr6 181788194 181788579 -7490975 + MLT1C LTR MaLR 9 407 -60 1460 194 10 28 chr6 181788579 181788887 -7490667 + AluJb SINE Alu 1 303 0 1122 213 93 72 chr6 181788887 181788942 -7490612 + MLT1C LTR MaLR 407 459 -8 414 0 0 0 chr6 181789273 181789319 -7490235 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2040 113 7 30 chr6 181790381 181790514 -7489040 + AluSx SINE Alu 1 136 -176 2229 109 13 0 chr6 181790514 181790817 -7488737 + AluSq SINE Alu 1 307 -6 2040 113 7 30 chr6 181790817 181790985 -7488569 + AluSx SINE Alu 136 295 -17 27 62 0 0 chr6 181791051 181791099 -7488455 + AT_rich Low_complexity Low_complexity 1 48 0 324 223 128 74 chr6 181792090 181792138 -7487416 - MIR SINE MIR -61 201 157 2152 107 10 3 chr6 181792138 181792436 -7487118 - AluSp SINE Alu -13 300 1 324 223 128 74 chr6 181792436 181792535 -7487019 - MIR SINE MIR -105 157 46 530 238 35 82 chr6 181792640 181792802 -7486752 + MER106B DNA MER1_type 25 193 -866 1921 141 3 32 chr6 181792802 181793115 -7486439 + AluJb SINE Alu 1 304 -8 530 238 35 82 chr6 181793115 181793170 -7486384 + MER106B DNA MER1_type 193 1059 0 2188 121 36 36 chr6 181793301 181793665 -7485889 + THE1B LTR MaLR 1 364 0 700 239 56 10 chr6 181794116 181794313 -7485241 - MER3 DNA MER1_type -3 206 1 535 248 54 7 chr6 181794595 181794744 -7484810 + MIR SINE MIR 92 247 -15 474 257 88 7 chr6 181794993 181795141 -7484413 - MIR3 SINE MIR -6 202 43 1821 163 3 3 chr6 181795319 181795601 -7483953 + AluJb SINE Alu 1 282 -30 2350 77 7 0 chr6 181795601 181795900 -7483654 + AluSp SINE Alu 1 301 -12 2249 117 0 0 chr6 181796970 181797269 -7482285 - AluSg SINE Alu -11 299 1 320 275 75 75 chr6 181799664 181799904 -7479650 + MLT1K LTR MaLR 308 547 -41 1663 120 35 19 chr6 181799905 181800185 -7479369 + AluSx SINE Alu 35 312 0 2394 100 3 0 chr6 181800224 181800535 -7479019 + AluSp SINE Alu 1 312 -1 257 277 73 21 chr6 181800734 181800886 -7478668 - MIR SINE MIR -56 206 53 209 189 0 0 chr6 181800924 181800961 -7478593 + (CA)n Simple_repeat Simple_repeat 2 38 0 2133 109 0 0 chr6 181800990 181801293 -7478261 + AluSg SINE Alu 1 303 0 189 0 0 0 chr6 181802352 181802373 -7477181 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 475 264 73 22 chr6 181803579 181803757 -7475797 - L1ME LINE L1 -452 5669 5483 1988 160 3 0 chr6 181804050 181804357 -7475197 + AluJb SINE Alu 5 312 0 188 139 0 23 chr6 181804452 181804495 -7475059 + (TA)n Simple_repeat Simple_repeat 2 43 0 471 100 0 0 chr6 181806621 181806691 -7472863 + (TG)n Simple_repeat Simple_repeat 1 70 0 842 168 49 0 chr6 181807189 181807374 -7472180 - L1MB4 LINE L1 -3 6177 5984 348 289 122 0 chr6 181808389 181808545 -7471009 - MLT1K LTR MaLR -35 553 379 474 215 188 0 chr6 181809102 181809246 -7470308 - MLT1J2 LTR MaLR -276 174 4 2019 125 7 0 chr6 181809290 181809589 -7469965 + AluSx SINE Alu 1 301 0 520 246 75 11 chr6 181809622 181809809 -7469745 - MIR SINE MIR -10 252 54 207 260 29 48 chr6 181809823 181809927 -7469627 + MIR SINE MIR 161 262 0 208 355 56 0 chr6 181810559 181810666 -7468888 - MIR SINE MIR 0 262 150 1546 90 7 35 chr6 181810666 181811084 -7468470 - MER4C LTR ERV1 0 465 1 215 247 14 14 chr6 181811084 181811157 -7468397 - MIR SINE MIR -109 153 81 420 111 0 0 chr6 181812688 181812751 -7466803 + (TG)n Simple_repeat Simple_repeat 2 64 0 2072 130 3 3 chr6 181812992 181813285 -7466269 - AluSx SINE Alu -19 293 1 188 24 98 0 chr6 181814127 181814168 -7465386 + (TA)n Simple_repeat Simple_repeat 2 46 0 221 286 0 0 chr6 181814346 181814402 -7465152 - MIR3 SINE MIR -6 202 147 233 233 158 30 chr6 181814618 181814751 -7464803 + MIR SINE MIR 28 177 -85 21 0 0 0 chr6 181815657 181815678 -7463876 + GC_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr6 181816161 181816208 -7463346 + AT_rich Low_complexity Low_complexity 1 47 0 1674 187 35 0 chr6 181816727 181817010 -7462544 - AluJb SINE Alu -19 293 1 227 372 28 0 chr6 181817016 181817161 -7462393 + MIR SINE MIR 98 246 -16 428 284 105 64 chr6 181817171 181817738 -7461816 - L2 LINE L2 -13 3300 2696 2366 71 7 3 chr6 181817744 181818038 -7461516 + AluSp SINE Alu 2 296 -17 352 183 84 0 chr6 181818136 181818207 -7461347 - MER116 DNA Mariner -3 77 1 503 250 90 21 chr6 181818271 181818459 -7461095 + MIR SINE MIR 49 249 -13 22 70 0 0 chr6 181820973 181821016 -7458538 + AT_rich Low_complexity Low_complexity 1 43 0 30 0 0 0 chr6 181821094 181821124 -7458430 + AT_rich Low_complexity Low_complexity 1 30 0 202 111 0 67 chr6 181821304 181821349 -7458205 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 309 159 0 0 chr6 181822988 181823051 -7456503 + T-rich Low_complexity Low_complexity 1 63 0 2207 81 0 81 chr6 181824583 181824916 -7454638 - AluSx SINE Alu -2 310 5 973 165 25 0 chr6 181825290 181825448 -7454106 + FRAM SINE Alu 1 157 -19 1935 126 28 0 chr6 181825864 181826150 -7453404 + AluSg SINE Alu 1 294 -16 385 295 2 12 chr6 181827254 181827381 -7452173 + MIR SINE MIR 14 140 -68 1829 111 52 7 chr6 181827491 181827780 -7451774 - AluSx SINE Alu -10 302 1 22 0 0 0 chr6 181828460 181828482 -7451072 + AT_rich Low_complexity Low_complexity 1 22 0 522 358 89 15 chr6 181828808 181829350 -7450204 - L1MC4 LINE L1 -138 7904 7323 212 0 36 0 chr6 181829350 181829378 -7450176 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 474 245 127 72 chr6 181829425 181830011 -7449543 - L1MC4 LINE L1 -753 7208 6633 198 0 0 0 chr6 181830092 181830114 -7449440 + (T)n Simple_repeat Simple_repeat 1 22 0 222 191 0 0 chr6 181830503 181830550 -7449004 + (TG)n Simple_repeat Simple_repeat 1 47 0 309 213 82 41 chr6 181832247 181832369 -7447185 - L1ME4a LINE L1 -248 5873 5747 217 353 39 26 chr6 181832795 181832948 -7446606 - L2 LINE L2 -173 3099 2945 308 260 146 0 chr6 181833729 181833852 -7445702 - MER103 DNA DNA -23 143 3 1226 156 19 47 chr6 181835247 181835503 -7444051 - AluJo SINE Alu -17 295 47 2200 96 3 7 chr6 181836333 181836626 -7442928 + AluSg SINE Alu 1 292 -18 34 55 0 14 chr6 181837158 181837173 -7442381 + AT_rich Low_complexity Low_complexity 1 15 -57 2071 80 15 0 chr6 181837173 181837435 -7442119 + AluY SINE Alu 26 291 -20 34 55 0 14 chr6 181837435 181837492 -7442062 + AT_rich Low_complexity Low_complexity 15 72 0 21 36 0 0 chr6 181837623 181837651 -7441903 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 181838581 181838602 -7440952 + AT_rich Low_complexity Low_complexity 1 21 0 1990 99 85 0 chr6 181839246 181839528 -7440026 + AluSx SINE Alu 1 306 -6 3810 134 116 15 chr6 181841096 181841442 -7438112 - Tigger3(Golem) DNA MER2_type -1 3027 2717 188 86 29 0 chr6 181841442 181841477 -7438077 + (TGAG)n Simple_repeat Simple_repeat 4 39 0 3810 134 116 15 chr6 181841477 181841855 -7437699 - Tigger3(Golem) DNA MER2_type -311 2717 2230 2081 100 0 53 chr6 181842045 181842364 -7437190 - AluSx SINE Alu -6 306 5 1972 147 20 0 chr6 181842371 181842664 -7436890 - AluSx SINE Alu -13 299 1 230 310 46 11 chr6 181843031 181843118 -7436436 + MIR SINE MIR 82 171 -91 396 257 0 10 chr6 181843445 181843546 -7436008 + L2 LINE L2 3210 3309 -4 470 302 77 58 chr6 181844186 181844690 -7434864 - L2 LINE L2 -55 3258 2742 1758 200 64 11 chr6 181844694 181845148 -7434406 + Charlie1b DNA MER1_type 37 514 -9 498 300 100 0 chr6 181845149 181845379 -7434175 - L2 LINE L2 -582 2732 2480 182 258 16 48 chr6 181845412 181845474 -7434080 - L2 LINE L2 -925 2389 2330 22 0 0 0 chr6 181845553 181845575 -7433979 + AT_rich Low_complexity Low_complexity 1 22 0 1980 100 33 0 chr6 181846005 181846302 -7433252 + AluSg1 SINE Alu 3 308 0 353 271 82 53 chr6 181846972 181847142 -7432412 - MIR3 SINE MIR -25 183 9 22 0 0 0 chr6 181847616 181847638 -7431916 + AT_rich Low_complexity Low_complexity 1 22 0 1070 141 87 0 chr6 181847638 181847823 -7431731 - AluJb SINE Alu -25 287 87 1316 189 139 92 chr6 181847826 181848330 -7431224 - L1MD3 LINE L1 0 7995 7516 2270 87 0 0 chr6 181848330 181848628 -7430926 - AluY SINE Alu -13 298 1 1316 189 139 92 chr6 181848628 181848953 -7430601 - L1MD3 LINE L1 -479 7516 6921 21 36 0 0 chr6 181849353 181849381 -7430173 + AT_rich Low_complexity Low_complexity 1 28 0 1979 151 24 46 chr6 181849917 181850328 -7429226 - L1MA4A LINE L1 -2 6301 5900 1969 112 0 36 chr6 181851160 181851463 -7428091 + AluSq SINE Alu 1 292 -21 232 253 48 0 chr6 181852699 181852782 -7426772 + L1MC4 LINE L1 6610 6696 -1346 2081 134 0 0 chr6 181852782 181853074 -7426480 - AluSx SINE Alu -20 292 1 271 304 126 67 chr6 181853905 181854175 -7425379 + L3 LINE CR1 925 1210 -367 21 36 0 0 chr6 181854254 181854282 -7425272 + AT_rich Low_complexity Low_complexity 1 28 0 259 276 129 60 chr6 181854777 181854893 -7424661 - MIR3 SINE MIR -48 160 37 282 239 0 0 chr6 181855237 181855308 -7424246 - L2 LINE L2 -11 3261 3191 2233 109 0 0 chr6 181855440 181855743 -7423811 - AluSq SINE Alu -9 304 2 250 267 155 15 chr6 181855878 181856084 -7423470 - L1 LINE L1 -2269 3877 3643 21 0 0 0 chr6 181856114 181856135 -7423419 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 181856775 181856804 -7422750 + AT_rich Low_complexity Low_complexity 1 29 0 317 311 232 10 chr6 181857153 181857545 -7422009 + L2 LINE L2 1858 2336 -978 320 220 176 0 chr6 181858450 181858541 -7421013 + MIR3 SINE MIR 87 193 -15 920 322 127 13 chr6 181858659 181859142 -7420412 + L2 LINE L2 2772 3308 -5 650 224 89 39 chr6 181860166 181860345 -7419209 + MER5A DNA MER1_type 1 188 -1 659 269 106 62 chr6 181860426 181860832 -7418722 - L2 LINE L2 -40 3273 2850 291 125 0 0 chr6 181860902 181860942 -7418612 - U2 snRNA snRNA -148 40 1 385 268 87 8 chr6 181860945 181861072 -7418482 + MIR SINE MIR 80 216 -46 438 260 30 0 chr6 181861095 181861195 -7418359 + L2 LINE L2 3200 3302 -11 338 258 21 31 chr6 181861700 181861797 -7417757 - MLT1G1 LTR MaLR -16 579 484 1085 158 17 81 chr6 181861993 181862227 -7417327 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chr6 181864114 181864135 -7415419 + AT_rich Low_complexity Low_complexity 1 21 0 961 124 0 0 chr6 181864836 181864973 -7414581 - FLAM_C SINE Alu -6 137 1 187 387 0 0 chr6 181865495 181865557 -7413997 - L2 LINE L2 -692 2622 2561 278 354 0 23 chr6 181866025 181866155 -7413399 + MIR SINE MIR 127 253 -9 9544 185 51 19 chr6 181867010 181868020 -7411534 + L1 LINE L1 3115 4091 -2055 2004 118 16 10 chr6 181868020 181868324 -7411230 + AluSx SINE Alu 1 306 -6 9544 185 51 19 chr6 181868324 181868515 -7411039 + L1 LINE L1 4091 4274 -1872 2034 120 3 13 chr6 181868515 181868815 -7410739 + AluSq SINE Alu 1 297 -16 9544 185 51 19 chr6 181868815 181869829 -7409725 + L1 LINE L1 4274 5403 -743 552 142 183 8 chr6 181869869 181869989 -7409565 + L1MA9 LINE L1 6168 6308 -4 21 0 0 0 chr6 181870318 181870339 -7409215 + AT_rich Low_complexity Low_complexity 1 21 0 294 197 106 0 chr6 181870453 181870518 -7409036 + Tigger5 DNA MER2_type 7 78 -2245 362 215 13 13 chr6 181870518 181870597 -7408957 - Tigger5 DNA MER2_type -3 2320 2242 357 164 0 16 chr6 181870593 181870654 -7408900 + Tigger5 DNA MER2_type 2264 2323 0 * 201 288 0 68 chr6 181872242 181872315 -7407239 + L2 LINE L2 3204 3271 -1 247 363 51 48 chr6 181873070 181873343 -7406211 + L1ME LINE L1 566 839 -5280 344 310 131 36 chr6 181873425 181874087 -7405467 + L1ME LINE L1 988 1712 -4598 340 294 114 38 chr6 181874119 181874462 -7405092 + L1ME LINE L1 1789 2157 -4153 237 253 48 36 chr6 181874610 181874693 -7404861 + L1ME LINE L1 2316 2399 -3730 2475 147 47 7 chr6 181874696 181875125 -7404429 - Tigger2 DNA MER2_type 0 2718 2273 264 213 82 0 chr6 181875112 181875173 -7404381 - Tigger2 DNA MER2_type -2646 72 7 * 529 284 152 24 chr6 181875242 181875710 -7403844 + L1ME LINE L1 2654 3181 -2948 822 242 181 8 chr6 181875893 181876141 -7403413 - MLT1H LTR MaLR -258 291 1 1031 280 119 45 chr6 181876175 181877211 -7402343 + L1ME LINE L1 3226 4355 -1774 830 166 112 120 chr6 181877315 181877574 -7401980 + AluJo SINE Alu 1 257 -55 919 271 133 50 chr6 181877591 181877902 -7401652 + L1ME LINE L1 4451 4735 -1394 1772 176 12 23 chr6 181877902 181878248 -7401306 - MER2 DNA MER2_type -2 342 1 919 271 133 50 chr6 181878248 181878640 -7400914 + L1ME LINE L1 4735 5213 -916 593 256 96 7 chr6 181878660 181878953 -7400601 + L1ME LINE L1 5265 5583 -562 180 272 86 49 chr6 181879564 181879645 -7399909 - MIR SINE MIR -52 210 127 1900 145 0 3 chr6 181879674 181879990 -7399564 - AluSx SINE Alu 0 315 1 2193 75 32 11 chr6 181881677 181881959 -7397595 + AluSq SINE Alu 1 288 -25 2252 114 0 0 chr6 181882034 181882342 -7397212 - AluSg SINE Alu -1 309 2 216 0 0 0 chr6 181882906 181882930 -7396624 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 273 163 0 0 chr6 181882930 181882979 -7396575 + CT-rich Low_complexity Low_complexity 1 49 0 278 225 12 0 chr6 181883892 181883972 -7395582 + (TA)n Simple_repeat Simple_repeat 2 82 0 259 367 20 41 chr6 181884019 181884166 -7395388 + L2 LINE L2 3127 3270 -2 331 292 82 53 chr6 181884432 181884578 -7394976 - MIR3 SINE MIR -6 202 49 1692 133 33 27 chr6 181884578 181884879 -7394675 + AluJo SINE Alu 1 303 -9 331 292 82 53 chr6 181884879 181884903 -7394651 - MIR3 SINE MIR -159 49 27 3478 192 58 12 chr6 181885010 181885702 -7393852 - MER21B LTR ERV1 -51 812 89 8481 114 47 17 chr6 181885707 181886873 -7392681 - Tigger1 DNA MER2_type -29 2389 1176 1977 148 10 3 chr6 181886873 181887171 -7392383 - AluSx SINE Alu -9 303 4 8481 114 47 17 chr6 181887171 181887360 -7392194 - Tigger1 DNA MER2_type -1242 1176 994 1619 187 51 19 chr6 181887355 181887670 -7391884 - Tigger1 DNA MER2_type -2093 325 1 * 408 110 85 49 chr6 181887670 181887752 -7391802 - MER21B LTR ERV1 -778 85 1 230 171 24 0 chr6 181887866 181887907 -7391647 - 5S rRNA rRNA -79 42 1 1459 92 60 0 chr6 181888507 181888724 -7390830 + MER30 DNA MER1_type 1 230 0 1106 245 139 80 chr6 181889898 181890990 -7388564 - L1MC5 LINE L1 -72 7889 6733 397 318 124 69 chr6 181891166 181891836 -7387718 - L1MC4a LINE L1 -1290 6518 5812 363 285 12 0 chr6 181891931 181892047 -7387507 - L1MC4a LINE L1 -608 5554 5489 320 0 25 0 chr6 181892098 181892138 -7387416 + (TG)n Simple_repeat Simple_repeat 2 42 0 506 227 113 38 chr6 181892378 181892563 -7386991 - MER105 DNA DNA -2 202 4 328 279 132 0 chr6 181893510 181893646 -7385908 - L3 LINE CR1 -178 1399 1246 513 259 171 0 chr6 181893805 181894021 -7385533 - MER5C DNA MER1_type 0 324 72 25 0 0 0 chr6 181894141 181894166 -7385388 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr6 181894403 181894442 -7385112 + AT_rich Low_complexity Low_complexity 1 39 0 2089 108 14 3 chr6 181895807 181896102 -7383452 - AluSq SINE Alu -15 298 1 467 175 0 97 chr6 181896247 181896350 -7383204 + AluJ/FLAM SINE Alu 3 95 -217 758 242 131 16 chr6 181896742 181897048 -7382506 - MER2 DNA MER2_type -3 341 1 2318 206 36 48 chr6 181897086 181897333 -7382221 - MER82 DNA MER2_type -22 631 383 246 81 0 0 chr6 181897333 181897370 -7382184 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2318 206 36 48 chr6 181897370 181897577 -7381977 - MER82 DNA MER2_type -270 383 183 2141 129 3 0 chr6 181897577 181897888 -7381666 - AluSx SINE Alu 0 312 1 2318 206 36 48 chr6 181897888 181898034 -7381520 - MER82 DNA MER2_type -470 183 37 1510 215 168 37 chr6 181898081 181898682 -7380872 - L1MC4 LINE L1 -122 7920 7241 459 260 167 16 chr6 181898968 181899160 -7380394 - MIR SINE MIR -38 224 4 760 286 215 25 chr6 181899170 181899752 -7379802 + L2 LINE L2 2619 3313 0 443 315 15 0 chr6 181900404 181900534 -7379020 - MER94 DNA DNA -1 133 2 277 262 0 0 chr6 181900941 181901002 -7378552 - MER3 DNA MER1_type -148 61 1 323 290 37 0 chr6 181901074 181901181 -7378373 - L1MC4 LINE L1 0 8042 7932 1456 148 104 19 chr6 181901522 181901839 -7377715 - MER46B DNA MER2_type -17 219 1 573 284 149 28 chr6 181902472 181903054 -7376500 - L2 LINE L2 -79 3234 2579 26 30 0 0 chr6 181903770 181903803 -7375751 + AT_rich Low_complexity Low_complexity 1 33 0 1910 170 0 0 chr6 181904715 181905026 -7374528 + AluJb SINE Alu 2 312 0 2598 136 23 2 chr6 181905377 181905817 -7373737 - L1P4 LINE L1 -361 5805 5357 674 161 7 44 chr6 181905817 181905954 -7373600 - FLAM_C SINE Alu 0 133 2 557 182 0 18 chr6 181905955 181906065 -7373489 - L1 LINE L1 -1157 4989 4882 4317 220 42 27 chr6 181906065 181906424 -7373130 - L1P4 LINE L1 -814 5332 4980 1843 138 3 14 chr6 181906424 181906715 -7372839 - AluSx SINE Alu -23 289 2 4317 220 42 27 chr6 181906715 181907543 -7372011 - L1P4 LINE L1 -1166 4980 4127 5340 145 10 18 chr6 181907672 181908549 -7371005 + THE1C-int LTR MaLR 711 1580 0 1784 143 65 34 chr6 181908551 181908902 -7370652 + THE1C LTR MaLR 3 364 -11 242 323 195 24 chr6 181909258 181909422 -7370132 + L2 LINE L2 3066 3257 -15 502 329 51 14 chr6 181909967 181910183 -7369371 + L1ME LINE L1 6 229 -5841 3844 263 108 54 chr6 181910259 181911190 -7368364 + L1ME LINE L1 394 1274 -4806 2159 136 3 0 chr6 181911190 181911500 -7368054 - AluSq SINE Alu 0 313 3 3844 263 108 54 chr6 181911500 181911530 -7368024 + L1ME LINE L1 1274 1301 -4779 2044 111 4 0 chr6 181911530 181911809 -7367745 + AluSx SINE Alu 1 280 -32 252 86 0 0 chr6 181911809 181911844 -7367710 + (CAGT)n Simple_repeat Simple_repeat 4 38 0 3844 263 108 54 chr6 181911844 181912605 -7366949 + L1ME LINE L1 1301 2020 -4060 1914 147 0 7 chr6 181912605 181912935 -7366619 + AluSx SINE Alu 1 328 0 3844 263 108 54 chr6 181912935 181912950 -7366604 + L1ME LINE L1 2020 2033 -4047 2044 133 3 7 chr6 181912950 181913244 -7366310 + AluSx SINE Alu 1 293 -19 3844 263 108 54 chr6 181913244 181915069 -7364485 + L1ME LINE L1 2033 4138 -1942 912 289 49 20 chr6 181915098 181915506 -7364048 + L1MC/D LINE L1 2407 2826 -3320 1429 156 170 3 chr6 181915621 181915910 -7363644 + MER44D DNA MER2_type 2 608 -1 478 227 178 39 chr6 181916102 181916388 -7363166 - HsTC2 DNA Tc2 -115 1783 1282 709 263 72 25 chr6 181916395 181916703 -7362851 - LTR40b LTR ERVL 0 462 193 347 278 104 61 chr6 181917410 181918220 -7361334 + L1MC/D LINE L1 4973 5819 -751 2227 103 0 3 chr6 181918966 181919266 -7360288 - AluSc SINE Alu -10 299 1 183 42 0 0 chr6 181919709 181919733 -7359821 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 438 96 0 0 chr6 181919728 181919801 -7359753 + (TC)n Simple_repeat Simple_repeat 1 73 0 283 304 78 70 chr6 181919803 181919908 -7359646 - MLT2C1 LTR ERVL -58 339 236 571 217 46 7 chr6 181919908 181920060 -7359494 - MLT1E1 LTR MaLR -349 305 148 283 304 78 70 chr6 181920060 181920073 -7359481 - MLT2C1 LTR ERVL -161 236 68 941 151 11 28 chr6 181920077 181920256 -7359298 - AluSg/x SINE Alu -1 311 136 228 191 0 0 chr6 181920256 181920303 -7359251 - MLT1E1 LTR MaLR -532 92 46 482 262 0 0 chr6 181920344 181920447 -7359107 - MLT2F LTR ERVL -560 103 1 200 400 0 9 chr6 181920918 181921023 -7358531 - L2 LINE L2 0 3272 3169 21 0 0 0 chr6 181921299 181921320 -7358234 + AT_rich Low_complexity Low_complexity 1 21 0 234 350 119 7 chr6 181922115 181922258 -7357296 + MIR SINE MIR 5 163 -99 2244 94 7 0 chr6 181924208 181924494 -7355060 - AluSx SINE Alu -24 288 1 27 29 0 0 chr6 181925014 181925048 -7354506 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chr6 181926932 181926964 -7352590 + AT_rich Low_complexity Low_complexity 1 32 0 2315 82 7 16 chr6 181927134 181927440 -7352114 - AluSp SINE Alu -10 303 1 520 302 28 22 chr6 181927507 181927689 -7351865 - MIR SINE MIR -10 252 70 291 82 82 0 chr6 181927960 181928033 -7351521 + CT-rich Low_complexity Low_complexity 2 80 0 1921 116 7 30 chr6 181928036 181928338 -7351216 - AluSg SINE Alu -15 295 1 283 259 9 71 chr6 181928499 181928611 -7350943 + MIR SINE MIR 110 214 -48 216 298 43 43 chr6 181931145 181931286 -7348268 + MIR SINE MIR 116 256 -6 388 291 51 13 chr6 181932544 181932702 -7346852 - L2 LINE L2 -919 2395 2232 739 247 86 34 chr6 181933492 181933877 -7345677 - HAL1 LINE L1 -1125 1382 978 320 285 209 32 chr6 181934021 181934337 -7345217 - HAL1 LINE L1 -2034 473 102 751 150 15 8 chr6 181934346 181934479 -7345075 - AluJo SINE Alu -178 134 1 1282 239 103 26 chr6 181934966 181935725 -7343829 - L1MEc LINE L1 -5465 931 36 1329 224 30 12 chr6 181935968 181936385 -7343169 - MER119 DNA MER1_type -2 581 93 286 341 24 24 chr6 181937139 181937303 -7342251 + MIR SINE MIR 13 176 -86 312 246 14 0 chr6 181937396 181937465 -7342089 + L2 LINE L2 3240 3309 -4 201 265 29 29 chr6 181938058 181938126 -7341428 + CT-rich Low_complexity Low_complexity 5 72 0 2241 103 0 3 chr6 181938322 181938623 -7340931 + AluSx SINE Alu 1 300 -12 970 154 108 47 chr6 181939031 181939245 -7340309 + Tigger2 DNA MER2_type 2482 2708 -10 305 289 36 12 chr6 181939298 181939381 -7340173 + L2 LINE L2 3186 3270 -2 1512 177 48 7 chr6 181939600 181939871 -7339683 + AluJo SINE Alu 1 282 -30 351 259 35 0 chr6 181939914 181939999 -7339555 + MIR SINE MIR 172 259 -3 314 267 38 61 chr6 181940537 181940668 -7338886 + L2 LINE L2 2720 2847 -467 1597 276 215 32 chr6 181940795 181942057 -7337497 - L2 LINE L2 -5 3308 1812 531 272 0 14 chr6 181942078 181942225 -7337329 + L2 LINE L2 677 821 -2493 610 293 9 62 chr6 181942334 181942559 -7336995 - L1MC/D LINE L1 -2144 5664 5452 1273 226 112 21 chr6 181943556 181944118 -7335436 - L1MC/D LINE L1 -2884 3262 2650 25 65 0 0 chr6 181944810 181944856 -7334698 + AT_rich Low_complexity Low_complexity 1 46 0 257 150 0 0 chr6 181946776 181946816 -7332738 - MER2 DNA MER2_type -8 337 298 1124 135 0 28 chr6 181946910 181947088 -7332466 - MER2 DNA MER2_type -172 173 1 27 0 0 0 chr6 181948503 181948530 -7331024 + AT_rich Low_complexity Low_complexity 1 27 0 64 43 0 0 chr6 181948644 181948736 -7330818 + AT_rich Low_complexity Low_complexity 1 92 0 25 65 0 0 chr6 181948834 181948880 -7330674 + AT_rich Low_complexity Low_complexity 1 46 0 227 292 121 53 chr6 181950197 181950461 -7329093 + L2 LINE L2 2288 2569 -745 228 287 125 37 chr6 181950844 181950980 -7328574 + L2 LINE L2 3123 3270 -2 380 263 27 2 chr6 181951138 181951260 -7328294 + L1MB7 LINE L1 6052 6183 -1 182 344 145 27 chr6 181951270 181951607 -7327947 - L2 LINE L2 -391 2923 2547 856 92 92 21 chr6 181951698 181951839 -7327715 - THE1C LTR MaLR -42 333 183 1988 151 0 3 chr6 181952103 181952407 -7327147 + AluSx SINE Alu 2 304 -8 1728 139 182 19 chr6 181952742 181953110 -7326444 - MSTC LTR MaLR 0 428 1 2322 81 0 3 chr6 181953338 181953636 -7325918 + AluY SINE Alu 1 297 -14 986 205 45 90 chr6 181953795 181954083 -7325471 - MER21B LTR ERV1 0 863 589 2218 166 23 50 chr6 181954589 181954877 -7324677 - Tigger2a DNA MER2_type -2274 434 161 2308 88 7 7 chr6 181954877 181955183 -7324371 - AluY SINE Alu -5 306 1 2218 166 23 50 chr6 181955183 181955334 -7324220 - Tigger2a DNA MER2_type -2547 161 7 2127 115 7 7 chr6 181955717 181956075 -7323479 - AluSq SINE Alu 0 313 1 620 314 135 19 chr6 181957208 181957629 -7321925 + L2 LINE L2 2273 2742 -572 743 104 0 0 chr6 181958089 181958204 -7321350 + AluSc SINE Alu 186 300 -9 296 316 43 17 chr6 181958627 181958744 -7320810 + MIR SINE MIR 4 123 -139 2123 100 36 3 chr6 181958904 181959205 -7320349 + AluSq SINE Alu 1 311 -2 25 0 0 0 chr6 181959250 181959275 -7320279 + AT_rich Low_complexity Low_complexity 1 25 0 404 222 150 33 chr6 181959329 181959509 -7320045 + MER46C DNA MER2_type 122 322 -16 1149 240 178 3 chr6 181959616 181960003 -7319551 + L1ME2 LINE L1 5601 6055 -109 3194 95 47 6 chr6 181960003 181960497 -7319057 + L1MA3 LINE L1 5792 6305 0 2298 100 7 3 chr6 181961063 181961372 -7318182 - AluSg SINE Alu 0 310 1 194 286 48 48 chr6 181961464 181961527 -7318027 + MIR SINE MIR 33 95 -167 24 0 0 0 chr6 181962039 181962063 -7317491 + AT_rich Low_complexity Low_complexity 1 24 0 205 244 77 26 chr6 181962823 181962901 -7316653 - L2 LINE L2 -62 3251 3170 919 214 36 0 chr6 181962919 181963111 -7316443 - MER6B DNA MER2_type -11 199 1 183 259 124 70 chr6 181963311 181963496 -7316058 - L2 LINE L2 -459 2855 2661 374 299 63 8 chr6 181963592 181963719 -7315835 - MER94 DNA DNA 0 134 1 1805 165 0 3 chr6 181963998 181964295 -7315259 + AluJo SINE Alu 1 296 -16 857 182 0 0 chr6 181966890 181967033 -7312521 - Tigger3(Golem) DNA MER2_type 0 3029 2887 493 120 27 0 chr6 181967031 181967106 -7312448 - Tigger3(Golem) DNA MER2_type -2952 77 1 * 21 57 0 0 chr6 181968410 181968445 -7311109 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr6 181971299 181971325 -7308229 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr6 181971850 181971872 -7307682 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 181972387 181972409 -7307145 + AT_rich Low_complexity Low_complexity 1 22 0 199 120 20 20 chr6 181973305 181973355 -7306199 + T-rich Low_complexity Low_complexity 3 52 0 1347 165 94 78 chr6 181981798 181982223 -7297331 - MSTB1 LTR MaLR 0 432 1 239 308 92 54 chr6 181984253 181984383 -7295171 - L2 LINE L2 -1 3271 3137 218 118 0 0 chr6 181985118 181985152 -7294402 + L2 LINE L2 3280 3313 0 339 262 91 23 chr6 181985804 181986113 -7293441 + L1ME LINE L1 1168 1497 -4929 7375 167 19 3 chr6 181986175 181988586 -7290968 + L1PA16 LINE L1 3721 6166 0 915 238 91 6 chr6 181988614 181988937 -7290617 + L1ME LINE L1 1549 2090 -4517 3496 131 82 6 chr6 181988938 181989611 -7289943 + Tigger3b DNA MER2_type 1 724 -507 947 223 81 53 chr6 181989717 181990189 -7289365 + L1ME LINE L1 2117 2601 -4006 249 0 0 0 chr6 181990218 181990247 -7289307 + LTR40a LTR ERVL 1 29 -490 375 267 0 12 chr6 181990252 181990338 -7289216 - HERVL40 LTR ERVL -5284 246 162 965 205 127 0 chr6 181990403 181990662 -7288892 + L1ME LINE L1 2573 2864 -3562 557 229 103 28 chr6 181990652 181990866 -7288688 + L1ME LINE L1 5644 5873 -571 * 462 256 85 0 chr6 181991529 181991693 -7287861 - MER104 DNA MER2_type -2 178 1 912 209 45 0 chr6 181991736 181991937 -7287617 + MER6B DNA MER2_type 1 210 0 33 25 0 0 chr6 181992203 181992243 -7287311 + AT_rich Low_complexity Low_complexity 1 40 0 2052 132 3 3 chr6 181992834 181993130 -7286424 + AluSx SINE Alu 1 296 -16 459 88 50 0 chr6 181993190 181993270 -7286284 - AluSp/q SINE Alu -4 309 226 2144 122 6 6 chr6 181993432 181993744 -7285810 + AluSx SINE Alu 1 312 0 878 212 166 21 chr6 181993939 181994222 -7285332 + MER5C DNA MER1_type 1 324 0 2110 133 0 22 chr6 181994534 181994851 -7284703 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr6 181995129 181995158 -7284396 + AT_rich Low_complexity Low_complexity 1 29 0 1774 150 58 21 chr6 181995486 181995813 -7283741 - MER2 DNA MER2_type -1 343 5 870 253 58 20 chr6 181996380 181996673 -7282881 + L1MC/D LINE L1 5263 5566 -2242 2034 123 7 7 chr6 181996857 181997174 -7282380 + AluSx SINE Alu 1 317 0 249 116 0 23 chr6 181997235 181997278 -7282276 + L2 LINE L2 3271 3312 -1 256 269 165 75 chr6 181997604 181997883 -7281671 + MLT1H LTR MaLR 236 539 -10 342 0 0 0 chr6 181998154 181998192 -7281362 + (CA)n Simple_repeat Simple_repeat 1 38 0 196 170 128 0 chr6 181998326 181998373 -7281181 - MIR SINE MIR -58 204 152 583 150 229 7 chr6 181998373 181998513 -7281041 + MIR SINE MIR 80 250 -12 2255 117 0 0 chr6 181998685 181998984 -7280570 + AluSx SINE Alu 9 307 -5 383 256 174 12 chr6 181999533 181999705 -7279849 - MIR SINE MIR -6 256 57 808 113 0 17 chr6 182001206 182001321 -7278233 - FLAM_C SINE Alu -11 132 20 24 0 0 0 chr6 182001585 182001609 -7277945 + AT_rich Low_complexity Low_complexity 1 24 0 288 324 39 55 chr6 182001771 182001953 -7277601 + MIR3 SINE MIR 8 186 -22 315 0 0 0 chr6 182002968 182003003 -7276551 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr6 182003056 182003077 -7276477 + AT_rich Low_complexity Low_complexity 1 21 0 890 311 53 13 chr6 182003079 182003606 -7275948 - L1MC4a LINE L1 -1884 5924 5377 1324 124 244 40 chr6 182003988 182004148 -7275406 - MER46B DNA MER2_type -2495 236 111 1947 153 0 3 chr6 182004148 182004436 -7275118 - AluJo SINE Alu -25 287 1 1324 124 244 40 chr6 182004436 182004574 -7274980 - MER46B DNA MER2_type -2620 111 2 314 245 116 7 chr6 182005037 182005184 -7274370 - L1ME4a LINE L1 -224 5897 5735 913 339 58 51 chr6 182005250 182005924 -7273630 - L2 LINE L2 -39 3233 2542 315 233 44 22 chr6 182005967 182006057 -7273497 - L1ME4a LINE L1 -474 5647 5556 27 62 0 0 chr6 182006642 182006690 -7272864 + AT_rich Low_complexity Low_complexity 1 48 0 1796 136 75 0 chr6 182007490 182007658 -7271896 - AluJo SINE Alu -12 300 101 207 0 0 0 chr6 182007658 182007681 -7271873 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1796 136 75 0 chr6 182007681 182007791 -7271763 - AluJo SINE Alu -211 101 1 192 97 0 0 chr6 182008805 182008836 -7270718 + (T)n Simple_repeat Simple_repeat 1 31 0 38 61 0 0 chr6 182010660 182010726 -7268828 + GC_rich Low_complexity Low_complexity 1 66 0 400 155 0 0 chr6 182010967 182011025 -7268529 - AluJ/FLAM SINE Alu -254 58 1 2202 130 7 0 chr6 182011758 182012065 -7267489 + AluSx SINE Alu 1 309 -3 226 282 21 99 chr6 182012606 182012748 -7266806 - L2 LINE L2 -27 3286 3156 834 154 0 0 chr6 182012757 182012874 -7266680 + AluJb SINE Alu 1 117 -195 623 326 101 63 chr6 182012889 182012984 -7266570 - L2 LINE L2 -161 3111 3021 2364 100 0 0 chr6 182012984 182013285 -7266269 - AluSx SINE Alu -7 305 5 623 326 101 63 chr6 182013285 182013583 -7265971 - L2 LINE L2 -251 3021 2736 2259 127 0 6 chr6 182013583 182013898 -7265656 + AluSq SINE Alu 1 313 0 623 326 101 63 chr6 182013898 182014373 -7265181 - L2 LINE L2 -536 2736 2213 1664 167 16 55 chr6 182014373 182014702 -7264852 - MLT1A1 LTR MaLR 0 365 50 2128 118 0 7 chr6 182014702 182014998 -7264556 + AluSg SINE Alu 1 294 -16 1664 167 16 55 chr6 182014998 182015033 -7264521 - MLT1A1 LTR MaLR -315 50 15 660 319 154 21 chr6 182015050 182015701 -7263853 - L2 LINE L2 -1130 2184 1448 616 346 97 86 chr6 182015720 182016362 -7263192 - MLT2F LTR ERVL -13 650 2 674 237 48 84 chr6 182016633 182016795 -7262759 - ERVL-F LTR ERVL -262 5502 5351 1998 140 10 0 chr6 182016795 182017088 -7262466 - AluSx SINE Alu -16 296 1 674 237 48 84 chr6 182017088 182017174 -7262380 - ERVL-F LTR ERVL -413 5351 5263 2737 90 3 0 chr6 182017214 182017603 -7261951 + MER41A LTR ERV1 1 390 -164 1733 129 48 11 chr6 182017603 182017874 -7261680 - AluSx SINE Alu -31 281 1 647 285 71 14 chr6 182017907 182018337 -7261217 + MER34 LTR ERV1 5 542 0 249 33 0 0 chr6 182018778 182018808 -7260746 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 210 307 16 24 chr6 182019822 182019949 -7259605 + GA-rich Low_complexity Low_complexity 4 129 0 308 321 143 49 chr6 182020291 182020578 -7258976 - L2 LINE L2 -1 3271 2958 180 0 0 0 chr6 182021240 182021260 -7258294 + (A)n Simple_repeat Simple_repeat 1 20 0 767 153 0 58 chr6 182021260 182021397 -7258157 + FLAM_C SINE Alu 1 129 -4 504 261 124 55 chr6 182021426 182021790 -7257764 + L1MC5 LINE L1 7249 7637 -324 253 294 22 73 chr6 182021968 182022104 -7257450 - MIR SINE MIR -6 256 128 416 237 0 0 chr6 182022446 182022522 -7257032 + MIR SINE MIR 3 78 -184 276 159 91 45 chr6 182022579 182022667 -7256887 + MER46A DNA MER2_type 55 146 -90 544 191 45 0 chr6 182022676 182022786 -7256768 + MIR SINE MIR 89 203 -59 263 202 57 0 chr6 182022786 182022910 -7256644 + (TA)n Simple_repeat Simple_repeat 2 132 0 211 366 21 52 chr6 182024542 182024733 -7254821 - L2 LINE L2 -171 3101 2917 1749 224 48 61 chr6 182024802 182025619 -7253935 - Charlie2 DNA MER1_type -202 2660 1855 356 321 116 13 chr6 182025623 182025847 -7253707 - Charlie2 DNA MER1_type -2540 322 76 789 89 0 9 chr6 182027020 182027132 -7252422 - HY1 scRNA scRNA -1 111 1 1072 99 0 0 chr6 182027480 182027611 -7251943 + AluSg SINE Alu 1 131 -179 253 280 53 0 chr6 182028705 182028780 -7250774 - L1M2 LINE L1 -545 5576 5501 24 53 0 0 chr6 182028877 182028915 -7250639 + AT_rich Low_complexity Low_complexity 1 38 0 895 156 7 0 chr6 182030087 182030228 -7249326 + LTR56 LTR ERV1 66 207 -238 1301 117 107 0 chr6 182030229 182030425 -7249129 + MER30 DNA MER1_type 2 218 -12 800 105 0 0 chr6 182031029 182031143 -7248411 + AluSc SINE Alu 186 299 -10 303 316 43 17 chr6 182031568 182031685 -7247869 + MIR SINE MIR 4 123 -139 2147 109 0 34 chr6 182031845 182032167 -7247387 + AluSx SINE Alu 1 311 -1 2146 195 27 33 chr6 182032167 182032486 -7247068 + L1M4 LINE L1 4643 4959 -1187 3726 51 0 0 chr6 182032486 182032918 -7246636 - L1PA5 LINE L1 -6 6148 5717 2146 195 27 33 chr6 182032918 182033111 -7246443 + L1M4 LINE L1 4959 5152 -994 316 321 189 33 chr6 182033449 182033782 -7245772 - L2 LINE L2 -25 3247 2863 206 338 122 15 chr6 182033771 182034034 -7245520 - L2 LINE L2 -1322 1992 1702 * 573 117 0 12 chr6 182034373 182034464 -7245090 - MER61E LTR ERV1 -90 454 328 2279 97 7 3 chr6 182035997 182036306 -7243248 - AluSx SINE Alu -2 310 1 1131 190 0 0 chr6 182037116 182037290 -7242264 + FAM SINE Alu 1 174 -1 693 220 115 19 chr6 182037655 182037864 -7241690 - MER20B DNA MER1_type -1 782 554 445 242 117 0 chr6 182037920 182038040 -7241514 - MER20B DNA MER1_type -343 440 307 22 0 0 0 chr6 182038585 182038607 -7240947 + AT_rich Low_complexity Low_complexity 1 22 0 1978 114 38 7 chr6 182038676 182038965 -7240589 - AluSx SINE Alu -14 298 1 691 232 197 32 chr6 182039148 182039458 -7240096 + Charlie2a DNA MER1_type 1 361 -2421 735 225 60 44 chr6 182039540 182039922 -7239632 + Charlie2a DNA MER1_type 745 2861 -1 461 291 8 0 chr6 182039926 182040043 -7239511 + L2 LINE L2 3192 3309 -4 190 296 159 0 chr6 182041217 182041305 -7238249 - L2 LINE L2 -12 3301 3200 227 240 0 0 chr6 182042060 182042110 -7237444 + (CGG)n Simple_repeat Simple_repeat 1 50 0 24 32 0 0 chr6 182042528 182042559 -7236995 + GC_rich Low_complexity Low_complexity 1 31 0 323 253 50 30 chr6 182043610 182043709 -7235845 + MIR SINE MIR 51 151 -57 182 307 102 23 chr6 182043740 182043828 -7235726 + MIR3 SINE MIR 13 107 -101 24 0 0 0 chr6 182044248 182044272 -7235282 + AT_rich Low_complexity Low_complexity 1 24 0 264 202 48 106 chr6 182044358 182044462 -7235092 + MER5A DNA MER1_type 92 189 0 304 191 60 71 chr6 182044900 182044984 -7234570 + MIR SINE MIR 124 206 -56 2298 114 0 0 chr6 182045112 182045411 -7234143 - AluSg SINE Alu -11 299 1 286 333 0 14 chr6 182045444 182045516 -7234038 - L2 LINE L2 -52 3220 3150 225 234 156 13 chr6 182045787 182045841 -7233713 + MLT1J LTR MaLR 96 160 -351 340 176 81 14 chr6 182045841 182045915 -7233639 + MER63 DNA MER1_type 1 705 -131 571 178 79 0 chr6 182045918 182046019 -7233535 - FLAM_A SINE Alu -11 131 23 225 333 0 0 chr6 182046097 182046148 -7233406 + LTR67 LTR ERVL 138 188 -369 389 229 86 19 chr6 182046372 182046477 -7233077 + LTR67 LTR ERVL 401 512 -45 5090 185 64 11 chr6 182046485 182047469 -7232085 - MER45B DNA AcHobo -4 1036 1 318 271 240 0 chr6 182047476 182047632 -7231922 - MER20B DNA MER1_type -2 217 15 1445 162 4 4 chr6 182048100 182048335 -7231219 + AluJb SINE Alu 1 235 -77 391 267 40 20 chr6 182048335 182048436 -7231118 + MER45B DNA AcHobo 245 347 -693 492 153 0 0 chr6 182048436 182048508 -7231046 + AluJb SINE Alu 227 298 -14 703 118 59 2 chr6 182048561 182048806 -7230748 + AluJb SINE Alu 1 304 -8 373 340 116 48 chr6 182049108 182049725 -7229829 + L2 LINE L2 2611 3267 -5 944 106 0 70 chr6 182050087 182050229 -7229325 - FLAM_C SINE Alu 0 133 2 1932 152 3 0 chr6 182050236 182050525 -7229029 - AluJb SINE Alu -22 290 1 504 141 0 33 chr6 182050626 182050790 -7228764 + MER20 DNA MER1_type 1 219 0 220 250 118 0 chr6 182050970 182051038 -7228516 + L2 LINE L2 3238 3313 0 1902 154 11 0 chr6 182051620 182051905 -7227649 + AluJo SINE Alu 1 288 -24 494 278 48 22 chr6 182052226 182052456 -7227098 - L1ME4a LINE L1 -232 5889 5654 1848 63 0 13 chr6 182052722 182052961 -7226593 - L1PA8 LINE L1 0 6172 5937 2188 102 0 3 chr6 182053022 182053358 -7226196 - AluSx SINE Alu 0 335 1 997 200 0 0 chr6 182053571 182053741 -7225813 - AluJb SINE Alu -14 298 129 1803 153 36 0 chr6 182053741 182054042 -7225512 - AluJb SINE Alu 0 312 1 241 317 20 30 chr6 182054773 182054874 -7224680 + L2 LINE L2 619 718 -2596 27 0 0 0 chr6 182055078 182055105 -7224449 + AT_rich Low_complexity Low_complexity 1 27 0 563 241 145 26 chr6 182055411 182055639 -7223915 + MIR SINE MIR 5 259 -3 183 360 0 40 chr6 182055793 182055893 -7223661 + MER5B DNA MER1_type 1 96 -82 337 314 129 14 chr6 182055939 182056079 -7223475 - MIR3 SINE MIR -51 157 2 1843 158 7 10 chr6 182056204 182056496 -7223058 + AluJo SINE Alu 1 291 -21 239 319 14 0 chr6 182057596 182057668 -7221886 - L2 LINE L2 0 3272 3200 282 270 112 0 chr6 182058275 182058364 -7221190 - L2 LINE L2 -31 3241 3143 305 368 44 0 chr6 182058618 182058754 -7220800 - L2 LINE L2 -600 2714 2573 183 42 0 0 chr6 182059050 182059074 -7220480 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1112 152 27 11 chr6 182059166 182059350 -7220204 + MER5A DNA MER1_type 3 189 0 386 202 79 0 chr6 182059780 182059869 -7219685 - MLT1H LTR MaLR 0 549 454 1986 81 103 0 chr6 182060024 182060295 -7219259 + AluSx SINE Alu 1 299 -13 705 239 30 6 chr6 182060322 182060489 -7219065 - MLT1H LTR MaLR -354 195 25 1718 153 32 14 chr6 182060508 182060789 -7218765 + AluJo SINE Alu 1 286 -26 373 151 54 54 chr6 182060957 182061050 -7218504 + MER53 DNA DNA 9 101 -88 * 487 72 60 24 chr6 182060970 182061053 -7218501 - MER53 DNA DNA -11 178 93 400 112 67 22 chr6 182061104 182061193 -7218361 + MER53 DNA DNA 97 189 0 640 252 82 68 chr6 182061679 182061807 -7217747 + MIR SINE MIR 18 152 -110 2318 100 0 0 chr6 182061807 182062108 -7217446 + AluSx SINE Alu 1 301 -11 640 252 82 68 chr6 182062108 182062185 -7217369 + MIR SINE MIR 152 226 -36 1017 74 0 0 chr6 182063798 182063920 -7215634 + AluY SINE Alu 11 132 -179 2422 90 0 0 chr6 182063921 182064220 -7215334 + AluSx SINE Alu 1 299 -13 15338 118 17 18 chr6 182064646 182066990 -7212564 - L1P LINE L1 -3794 2352 11 2276 93 3 0 chr6 182067262 182067553 -7212001 + AluSp SINE Alu 1 292 -21 1749 156 22 59 chr6 182067553 182067874 -7211680 - AluJo SINE Alu -3 309 1 243 265 181 0 chr6 182068854 182068937 -7210617 + MIR3 SINE MIR 87 184 -24 429 240 92 112 chr6 182069247 182069443 -7210111 - MIR SINE MIR -21 241 50 708 140 104 150 chr6 182070106 182070177 -7209377 + MER5A DNA MER1_type 6 79 -110 2403 67 0 0 chr6 182070177 182070461 -7209093 + AluY SINE Alu 1 284 -27 708 140 104 150 chr6 182070461 182070582 -7208972 + MER5A DNA MER1_type 79 189 0 1833 205 41 48 chr6 182071056 182071341 -7208213 + L1ME1 LINE L1 5665 5947 -219 2281 103 0 7 chr6 182071341 182071642 -7207912 + AluSx SINE Alu 1 299 -13 1833 205 41 48 chr6 182071642 182071839 -7207715 + L1ME1 LINE L1 5947 6144 -22 305 215 41 111 chr6 182071713 182071885 -7207669 + L1MA10 LINE L1 6173 6332 -2 * 514 203 39 39 chr6 182072211 182072285 -7207269 + L1ME4a LINE L1 5969 6042 -79 1951 133 23 10 chr6 182072285 182072593 -7206961 - AluJb SINE Alu 0 312 1 514 203 39 39 chr6 182072593 182072671 -7206883 + L1ME4a LINE L1 6041 6121 0 378 229 336 0 chr6 182072823 182072954 -7206600 - MER5A DNA MER1_type -1 188 14 1073 144 108 35 chr6 182072961 182073240 -7206314 + MER33 DNA MER1_type 1 288 -36 291 133 0 157 chr6 182073283 182073366 -7206188 + MER33 DNA MER1_type 255 324 0 286 211 14 14 chr6 182073542 182073613 -7205941 - MIR3 SINE MIR -5 203 133 1811 134 48 4 chr6 182073819 182074108 -7205446 - AluSx SINE Alu 0 301 1 2221 73 0 0 chr6 182074144 182074419 -7205135 + AluY SINE Alu 31 305 -6 22 35 0 0 chr6 182074962 182074991 -7204563 + AT_rich Low_complexity Low_complexity 1 29 0 2111 119 26 0 chr6 182075074 182075377 -7204177 - AluSx SINE Alu -1 311 1 261 0 0 0 chr6 182075897 182075926 -7203628 + (CA)n Simple_repeat Simple_repeat 2 30 0 216 0 0 0 chr6 182076133 182076157 -7203397 + (CA)n Simple_repeat Simple_repeat 2 25 0 1123 235 92 25 chr6 182076979 182077337 -7202217 + L2 LINE L2 1280 1661 -1653 916 267 85 55 chr6 182077339 182078060 -7201494 + L2 LINE L2 2574 3313 0 207 0 0 0 chr6 182078145 182078168 -7201386 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1741 159 36 4 chr6 182078170 182078447 -7201107 - AluSx SINE Alu -26 286 1 4294 134 55 31 chr6 182078549 182078602 -7200952 + Tigger2 DNA MER2_type 1 51 -2667 1847 138 0 26 chr6 182078602 182078906 -7200648 - AluJo SINE Alu -16 296 1 4294 134 55 31 chr6 182078906 182079614 -7199940 + Tigger2 DNA MER2_type 51 780 -1938 967 161 133 116 chr6 182079614 182079899 -7199655 + AluJo SINE Alu 6 295 -17 427 203 0 0 chr6 182079899 182079968 -7199586 + Tigger2 DNA MER2_type 788 856 -1862 * 977 170 0 29 chr6 182079961 182080132 -7199422 + Tigger2 DNA MER2_type 2553 2718 0 947 190 71 41 chr6 182080289 182080558 -7198996 - L1MEc LINE L1 -3135 3080 2804 351 141 56 28 chr6 182080562 182080633 -7198921 + L1M4 LINE L1 2655 2727 -3419 516 256 128 20 chr6 182080639 182080944 -7198610 - L1MEc LINE L1 -5413 983 646 454 275 0 0 chr6 182080996 182081105 -7198449 - MER58 DNA MER1_type -92 123 15 2130 239 56 16 chr6 182081180 182081678 -7197876 - LTR40a LTR ERVL -1 518 1 596 333 96 23 chr6 182081774 182082201 -7197353 - L1MEc LINE L1 -5884 512 55 243 0 0 0 chr6 182082210 182082237 -7197317 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2087 98 7 0 chr6 182082240 182082516 -7197038 - AluSc SINE Alu -31 278 1 501 231 39 0 chr6 182082904 182083008 -7196546 + MER81 DNA DNA 4 111 -3 2229 69 41 3 chr6 182084812 182085102 -7194452 + AluY SINE Alu 1 301 -10 425 298 21 35 chr6 182085240 182085381 -7194173 + MIR3 SINE MIR 3 141 -67 246 247 273 27 chr6 182085483 182085633 -7193921 - MIR SINE MIR -13 249 63 2423 80 3 10 chr6 182085742 182086055 -7193499 + AluY SINE Alu 1 311 0 2183 175 5 23 chr6 182086126 182086281 -7193273 - MLT1B LTR MaLR -8 382 226 1947 193 25 3 chr6 182086281 182086638 -7192916 + MLT1A1 LTR MaLR 1 365 0 2183 175 5 23 chr6 182086638 182086871 -7192683 - MLT1B LTR MaLR -164 226 1 626 251 193 14 chr6 182086918 182087125 -7192429 - MIR SINE MIR -17 245 2 369 111 0 0 chr6 182087286 182087340 -7192214 - MADE1 DNA Mariner -26 54 1 2150 145 0 3 chr6 182088711 182089022 -7190532 + AluSx SINE Alu 1 310 -2 204 288 0 45 chr6 182089171 182089237 -7190317 + MIR SINE MIR 81 143 -119 612 257 115 59 chr6 182091612 182091790 -7187764 - L3 LINE CR1 -1 1576 1409 1749 135 3 92 chr6 182091790 182092115 -7187439 - AluJb SINE Alu -16 296 1 612 257 115 59 chr6 182092115 182092259 -7187295 - L3 LINE CR1 -168 1409 1236 329 295 179 73 chr6 182092725 182093027 -7186527 + L2 LINE L2 2938 3271 -1 216 219 78 16 chr6 182093056 182093120 -7186434 + MIR3 SINE MIR 137 204 -4 329 333 12 16 chr6 182093233 182093408 -7186146 - MIR SINE MIR -3 205 29 2394 87 0 0 chr6 182094111 182094420 -7185134 - AluY SINE Alu -2 309 1 232 313 20 40 chr6 182094571 182094670 -7184884 + MIR SINE MIR 11 107 -155 536 253 40 27 chr6 182094695 182094845 -7184709 + MER5B DNA MER1_type 4 155 -23 344 218 113 60 chr6 182094912 182094967 -7184587 + MIR SINE MIR 106 157 -105 2160 94 3 23 chr6 182094967 182095274 -7184280 + AluY SINE Alu 1 301 -10 344 218 113 60 chr6 182095274 182095351 -7184203 + MIR SINE MIR 157 245 -17 1809 136 70 0 chr6 182095582 182095854 -7183700 - AluJb SINE Alu -21 291 1 351 294 178 20 chr6 182095966 182096112 -7183442 + MIR3 SINE MIR 30 198 -10 546 252 43 51 chr6 182096140 182096374 -7183180 - L2 LINE L2 -396 2918 2687 * 819 251 77 0 chr6 182096344 182096551 -7183003 - MIR SINE MIR -4 258 36 2382 78 7 0 chr6 182097742 182098037 -7181517 + AluSp SINE Alu 1 297 -16 1194 85 13 0 chr6 182098037 182098190 -7181364 + AluSc SINE Alu 132 286 -23 334 120 0 0 chr6 182099101 182099151 -7180403 - Alu SINE Alu -252 50 1 22 0 0 0 chr6 182099831 182099853 -7179701 + AT_rich Low_complexity Low_complexity 1 22 0 233 327 104 27 chr6 182100197 182100640 -7178914 - L1MC4 LINE L1 -156 7886 7410 212 0 36 0 chr6 182100722 182100750 -7178804 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 541 255 148 64 chr6 182100797 182101551 -7178003 - L1MC4 LINE L1 -753 7208 6435 222 191 0 0 chr6 182101874 182101921 -7177633 + (TG)n Simple_repeat Simple_repeat 1 47 0 1175 139 12 0 chr6 182103162 182103335 -7176219 + AluSg/x SINE Alu 102 276 -36 353 184 219 0 chr6 182104611 182104725 -7174829 - L1ME4a LINE L1 -256 5865 5727 1281 160 28 5 chr6 182104860 182105072 -7174482 + MER20 DNA MER1_type 1 217 -2 2122 123 3 3 chr6 182105128 182105428 -7174126 + AluSx SINE Alu 3 302 -10 420 257 86 57 chr6 182105518 182105728 -7173826 - MLT1J2 LTR MaLR -232 218 3 1189 153 53 10 chr6 182105891 182106100 -7173454 + AluSg/x SINE Alu 85 302 -10 587 294 0 75 chr6 182106154 182106382 -7173172 + LTR33 LTR ERVL 1 211 -310 355 299 122 5 chr6 182106419 182106616 -7172938 + LTR33 LTR ERVL 293 512 -9 1616 228 50 5 chr6 182107159 182107562 -7171992 + MLT1C LTR MaLR 45 465 -2 356 283 251 4 chr6 182107882 182108129 -7171425 - MLT1I LTR MaLR -17 392 85 194 280 28 56 chr6 182109849 182109956 -7169598 + MIR SINE MIR 119 222 -40 399 258 67 0 chr6 182111167 182111287 -7168267 - MER91C DNA MER1_type -1 139 12 2271 97 0 3 chr6 182111395 182111695 -7167859 + AluSc SINE Alu 1 299 -10 2356 107 0 0 chr6 182112917 182113227 -7166327 + AluSg SINE Alu 1 310 0 1573 192 0 4 chr6 182114077 182114372 -7165182 - AluJo SINE Alu 0 314 21 2020 85 3 85 chr6 182114761 182115078 -7164476 + AluSq SINE Alu 13 303 -10 387 360 81 17 chr6 182115083 182115319 -7164235 + MIR SINE MIR 12 262 0 35 98 0 0 chr6 182116537 182116649 -7162905 + AT_rich Low_complexity Low_complexity 1 112 0 700 162 74 7 chr6 182117663 182117811 -7161743 - MER58B DNA MER1_type -15 326 169 869 83 0 45 chr6 182117835 182117968 -7161586 + L1MB3 LINE L1 6056 6182 -1 1996 97 11 0 chr6 182118053 182118369 -7161185 + AluY SINE Alu 1 319 0 801 69 0 146 chr6 182118391 182118535 -7161019 + AluSg/x SINE Alu 170 292 -20 2939 176 60 5 chr6 182119310 182119914 -7159640 - L1 LINE L1 -1132 5014 4378 2286 87 3 3 chr6 182119919 182120207 -7159347 - AluSq SINE Alu -16 297 10 1052 171 32 11 chr6 182120216 182120403 -7159151 + AluJb SINE Alu 103 293 -19 2154 118 0 0 chr6 182121159 182121448 -7158106 + AluSx SINE Alu 1 289 -23 212 0 0 35 chr6 182121451 182121480 -7158074 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 272 194 90 15 chr6 182123269 182123336 -7156218 + MIR SINE MIR 61 132 -76 195 42 0 0 chr6 182123912 182123936 -7155618 + (TAAAAA)n Simple_repeat Simple_repeat 3 26 0 414 266 70 0 chr6 182124097 182124225 -7155329 - MIR SINE MIR -3 259 123 220 292 137 36 chr6 182125066 182125234 -7154320 + MIR3 SINE MIR 17 201 -7 488 161 97 16 chr6 182125263 182125387 -7154167 + L1ME4a LINE L1 5986 6119 -2 696 149 18 18 chr6 182126116 182126230 -7153324 + AluSg/x SINE Alu 190 303 -7 1398 78 52 30 chr6 182126480 182126711 -7152843 - MER46B DNA MER2_type 0 236 126 826 136 32 0 chr6 182126744 182126869 -7152685 - FLAM_A SINE Alu -4 129 1 754 164 60 22 chr6 182126869 182127003 -7152551 - MER46B DNA MER2_type -221 140 2 2216 83 7 3 chr6 182127360 182127661 -7151893 - AluSx SINE Alu -10 302 1 383 294 140 23 chr6 182129554 182129819 -7149735 - L1 LINE L1 -1551 4595 4300 1562 199 0 7 chr6 182129987 182130100 -7149454 + AluJb SINE Alu 10 122 -190 207 0 0 0 chr6 182130100 182130123 -7149431 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1562 199 0 7 chr6 182130123 182130290 -7149264 + AluJb SINE Alu 122 288 -24 1142 98 52 0 chr6 182130891 182131064 -7148490 - LTR56 LTR ERV1 -10 435 254 931 174 11 11 chr6 182131164 182131348 -7148206 - L1P4 LINE L1 -566 5600 5417 227 248 38 0 chr6 182131582 182131687 -7147867 + (TA)n Simple_repeat Simple_repeat 1 109 0 22 56 0 0 chr6 182132401 182132437 -7147117 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr6 182132745 182132776 -7146778 + AT_rich Low_complexity Low_complexity 1 31 0 516 268 66 58 chr6 182132779 182133223 -7146331 + L1MC4a LINE L1 5476 5904 -217 245 339 98 9 chr6 182133718 182133830 -7145724 - L2 LINE L2 -5 3267 3146 1957 125 14 3 chr6 182134667 182134955 -7144599 + AluSx SINE Alu 1 291 -21 231 148 37 19 chr6 182136746 182136800 -7142754 - L1ME4a LINE L1 -103 6018 5964 303 295 82 63 chr6 182136810 182137067 -7142487 - L1ME4a LINE L1 -209 5912 5643 2384 93 3 0 chr6 182137067 182137378 -7142176 - AluSp SINE Alu -1 312 1 303 295 82 63 chr6 182137378 182137534 -7142020 - L1ME4a LINE L1 -478 5643 5491 25 83 0 0 chr6 182137777 182137837 -7141717 + AT_rich Low_complexity Low_complexity 1 60 0 327 290 121 8 chr6 182138564 182138688 -7140866 + MIR3 SINE MIR 50 187 -21 219 364 116 8 chr6 182138702 182138823 -7140731 - L2 LINE L2 -4 3309 3176 379 169 0 0 chr6 182139187 182139258 -7140296 - AluSp/q SINE Alu 0 303 233 2450 78 0 0 chr6 182139304 182139612 -7139942 + AluSc SINE Alu 1 308 -1 653 254 85 31 chr6 182139688 182139912 -7139642 - MIR SINE MIR -25 237 2 22 35 0 0 chr6 182140151 182140180 -7139374 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr6 182140641 182140674 -7138880 + AT_rich Low_complexity Low_complexity 1 33 0 459 143 82 0 chr6 182140895 182140993 -7138561 + L1MA8 LINE L1 6180 6285 -6 34 24 0 0 chr6 182141075 182141116 -7138438 + AT_rich Low_complexity Low_complexity 1 41 0 402 320 60 15 chr6 182141730 182141930 -7137624 + L2 LINE L2 2849 3057 -215 4963 222 18 48 chr6 182244060 182244594 -7034960 - L1 LINE L1 -2605 4960 4412 2218 125 0 3 chr6 182244594 182244906 -7034648 - AluSx SINE Alu -1 311 1 4963 222 18 48 chr6 182244906 182246084 -7033470 - L1 LINE L1 -3153 4412 3294 263 309 8 16 chr6 182246107 182246233 -7033321 - L1MDa LINE L1 -1277 5263 5139 21 89 0 0 chr6 182246245 182246301 -7033253 + AT_rich Low_complexity Low_complexity 1 56 0 305 245 10 69 chr6 182246360 182246462 -7033092 - L1MDa LINE L1 -2378 4162 4067 741 132 0 0 chr6 182246538 182246644 -7032910 + AluSq/x SINE Alu 1 106 -207 1749 113 4 0 chr6 182246644 182246875 -7032679 + AluSx SINE Alu 50 281 -31 207 0 0 0 chr6 182246878 182246901 -7032653 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 738 239 82 37 chr6 182246991 182247259 -7032295 + L1MC/D LINE L1 5296 5575 -2233 547 297 110 5 chr6 182247748 182247957 -7031597 + MIR SINE MIR 2 232 -30 579 221 139 95 chr6 182249052 182249432 -7030122 - LTR16A1 LTR ERVL 0 457 61 198 328 90 23 chr6 182249505 182249705 -7029849 - L2 LINE L2 -312 3001 2791 759 291 78 46 chr6 182249733 182250166 -7029388 - L2 LINE L2 -373 2941 2495 292 279 150 7 chr6 182250667 182250807 -7028747 - MIR SINE MIR -32 230 71 2268 107 0 0 chr6 182250826 182251126 -7028428 + AluSc SINE Alu 1 300 -9 318 267 35 26 chr6 182251209 182251325 -7028229 + L2 LINE L2 3195 3311 -2 2079 118 0 0 chr6 182253163 182253451 -7026103 + AluY SINE Alu 1 288 -23 23 33 0 0 chr6 182253846 182253876 -7025678 + AT_rich Low_complexity Low_complexity 1 30 0 2301 84 0 7 chr6 182253917 182254213 -7025341 - AluSg SINE Alu -16 294 1 189 0 0 0 chr6 182254259 182254280 -7025274 + (CAT)n Simple_repeat Simple_repeat 2 22 0 185 210 16 0 chr6 182254284 182254346 -7025208 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 1249 214 26 36 chr6 182254456 182254760 -7024794 + MER76 LTR ERV 287 587 -101 3453 166 32 34 chr6 182255100 182255842 -7023712 - L1MA7 LINE L1 0 6291 5551 236 202 153 8 chr6 182255845 182255969 -7023585 - L1MDa LINE L1 -2699 3841 3700 336 268 78 0 chr6 182256014 182256193 -7023361 - L1MDa LINE L1 -3119 3421 3229 611 224 107 65 chr6 182256418 182256850 -7022704 - L1MDa LINE L1 -3585 2955 2506 25 0 0 0 chr6 182256886 182256911 -7022643 + AT_rich Low_complexity Low_complexity 1 25 0 337 302 124 11 chr6 182257278 182257731 -7021823 - L1MDa LINE L1 -869 2032 1516 30 0 0 0 chr6 182257753 182257783 -7021771 + AT_rich Low_complexity Low_complexity 1 30 0 331 224 24 12 chr6 182258438 182258523 -7021031 + MLT1I LTR MaLR 316 401 -8 258 209 60 45 chr6 182258559 182258626 -7020928 - MIR SINE MIR -112 150 83 265 253 157 12 chr6 182261537 182261703 -7017851 + HAL1 LINE L1 844 1033 -1474 472 294 111 8 chr6 182262171 182262423 -7017131 - L2 LINE L2 -1370 1944 1667 2609 3 0 3 chr6 182262665 182262950 -7016604 - AluYb8 SINE Alu 0 318 35 1737 210 43 6 chr6 182264148 182264495 -7015059 + MLT1A1 LTR MaLR 5 364 -1 311 259 24 24 chr6 182264989 182265074 -7014480 - MIR3 SINE MIR -37 171 87 1222 223 159 11 chr6 182265105 182265482 -7014072 - MER69 DNA AcHobo 0 2526 2094 374 218 13 13 chr6 182265828 182265906 -7013648 - MER69 DNA AcHobo -2448 78 1 1425 73 59 0 chr6 182266054 182266258 -7013296 + L1PB1 LINE L1 5935 6150 -1 21 57 0 0 chr6 182266710 182266745 -7012809 + AT_rich Low_complexity Low_complexity 1 35 0 420 135 0 0 chr6 182267012 182267086 -7012468 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 258 321 18 18 chr6 182267099 182267208 -7012346 - L2 LINE L2 -11 3261 3153 207 290 32 32 chr6 182267571 182267633 -7011921 - L2 LINE L2 -1 3271 3210 2906 126 13 7 chr6 182268035 182268489 -7011065 - L1PA11 LINE L1 -1 6173 5717 6066 252 62 39 chr6 182268929 182271515 -7008039 + L1MEc LINE L1 40 2674 -3541 328 256 135 15 chr6 182272028 182272161 -7007393 - MIR SINE MIR -48 214 66 733 276 63 18 chr6 182272750 182273036 -7006518 - L1ME LINE L1 -341 5780 5482 206 77 51 0 chr6 182273690 182273729 -7005825 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 402 121 0 0 chr6 182274316 182274382 -7005172 + (GA)n Simple_repeat Simple_repeat 2 67 0 1938 139 11 72 chr6 182274670 182275030 -7004524 - MER1B DNA MER1_type 0 339 2 896 288 77 7 chr6 182275492 182275777 -7003777 + MLT1J2 LTR MaLR 3 307 -143 216 254 15 15 chr6 182276574 182276641 -7002913 + (TA)n Simple_repeat Simple_repeat 1 67 0 306 141 26 26 chr6 182276645 182276723 -7002831 + (TATATG)n Simple_repeat Simple_repeat 1 78 0 282 143 16 0 chr6 182276745 182276808 -7002746 + LTR66 LTR ERVL 394 457 -153 5077 153 31 7 chr6 182277053 182278140 -7001414 - L1MC1 LINE L1 -1 6358 5186 336 246 43 0 chr6 182278151 182278220 -7001334 - tRNA-Glu-GAG tRNA tRNA -3 72 1 202 204 56 37 chr6 182280533 182280587 -6998967 + L2 LINE L2 2439 2493 -821 320 333 106 8 chr6 182280655 182280787 -6998767 + L2 LINE L2 3169 3313 0 1229 289 326 18 chr6 182280987 182282176 -6997378 - L2 LINE L2 -1737 1577 22 297 287 12 98 chr6 182282278 182282532 -6997022 - L1ME LINE L1 -339 5831 5600 326 271 121 30 chr6 182282603 182282769 -6996785 - MLT1L LTR MaLR -132 483 303 1194 54 0 0 chr6 182283023 182283172 -6996382 + L1PA13 LINE L1 6007 6155 -8 743 271 77 21 chr6 182283200 182283891 -6995663 - L1ME LINE L1 -564 5600 4864 831 275 84 90 chr6 182283908 182284455 -6995099 - L2 LINE L2 0 3313 2770 283 225 63 45 chr6 182284504 182284615 -6994939 - L1P LINE L1 -1155 4991 4879 535 296 63 46 chr6 182284752 182285340 -6994214 - L1ME LINE L1 -1488 4658 4061 1956 121 34 3 chr6 182286164 182286461 -6993093 + AluSx SINE Alu 1 306 -6 291 314 107 19 chr6 182286482 182286641 -6992913 - HAL1b LINE L1 -796 552 380 22 70 0 0 chr6 182288379 182288422 -6991132 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr6 182289512 182289548 -6990006 + AT_rich Low_complexity Low_complexity 1 36 0 2067 108 35 0 chr6 182290292 182290578 -6988976 - AluSx SINE Alu -16 296 1 23 54 0 0 chr6 182290959 182290996 -6988558 + AT_rich Low_complexity Low_complexity 1 37 0 210 375 113 28 chr6 182291966 182292286 -6987268 + L2 LINE L2 1999 2345 -969 259 363 24 8 chr6 182292572 182292696 -6986858 - L2 LINE L2 -556 2758 2633 184 358 58 29 chr6 182293530 182293667 -6985887 + MIR SINE MIR 1 141 -121 1974 170 18 3 chr6 182294001 182294343 -6985211 - MER7A DNA MER2_type 0 346 2 14562 133 26 14 chr6 182294357 182295270 -6984284 - Tigger1 DNA MER2_type -7 2411 1511 2189 120 3 7 chr6 182295270 182295579 -6983975 - AluSq SINE Alu -5 308 1 14562 133 26 14 chr6 182295579 182297046 -6982508 - Tigger1 DNA MER2_type -907 1511 2 23 92 0 0 chr6 182297978 182298043 -6981511 + AT_rich Low_complexity Low_complexity 1 65 0 4781 230 67 36 chr6 182299020 182300392 -6979162 + L1MD1 LINE L1 516 1930 -4610 519 328 21 11 chr6 182300381 182300668 -6978886 + L1MD1 LINE L1 3605 3894 -2646 * 364 247 13 19 chr6 182300670 182300828 -6978726 + L1MD1 LINE L1 4255 4411 -2129 * 601 213 26 1 chr6 182300809 182300961 -6978593 + L1MD1 LINE L1 6073 6229 -327 370 185 0 0 chr6 182300962 182301027 -6978527 - MER46A DNA MER2_type -1 235 171 * 503 132 0 13 chr6 182301026 182301102 -6978452 - MER46A DNA MER2_type -133 103 29 1550 183 111 6 chr6 182301114 182301474 -6978080 + L1MD1 LINE L1 6228 6625 -11 22 80 0 0 chr6 182302336 182302386 -6977168 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr6 182305202 182305226 -6974328 + AT_rich Low_complexity Low_complexity 1 24 0 2529 62 0 0 chr6 182305514 182305821 -6973733 - AluY SINE Alu -4 307 1 1028 181 50 0 chr6 182306688 182306887 -6972667 + MER3 DNA MER1_type 1 209 0 22 0 0 0 chr6 182307184 182307206 -6972348 + AT_rich Low_complexity Low_complexity 1 22 0 310 246 55 82 chr6 182308744 182308854 -6970700 + L2 LINE L2 3200 3306 -7 263 295 13 13 chr6 182308907 182308985 -6970569 + MIR3 SINE MIR 115 192 -16 21 0 0 0 chr6 182309591 182309612 -6969942 + AT_rich Low_complexity Low_complexity 1 21 0 363 306 56 67 chr6 182311757 182312025 -6967529 - HAL1b LINE L1 -652 696 432 2450 74 0 7 chr6 182312672 182312982 -6966572 - AluY SINE Alu -3 308 1 252 0 0 0 chr6 182315103 182315131 -6964423 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 194 170 0 21 chr6 182315522 182315569 -6963985 + (TATATG)n Simple_repeat Simple_repeat 1 46 0 2411 93 3 0 chr6 182315622 182315932 -6963622 - AluSp SINE Alu -2 311 1 27 0 0 0 chr6 182316287 182316314 -6963240 + AT_rich Low_complexity Low_complexity 1 27 0 240 276 47 83 chr6 182316878 182317070 -6962484 + L2 LINE L2 2902 3086 -186 809 304 55 0 chr6 182317604 182317877 -6961677 - L2 LINE L2 -2 3311 3024 27 0 0 0 chr6 182318086 182318113 -6961441 + AT_rich Low_complexity Low_complexity 1 27 0 635 226 0 0 chr6 182318724 182318848 -6960706 + Tigger3(Golem) DNA MER2_type 1 124 -2905 241 224 13 53 chr6 182318894 182318970 -6960584 - MER21A LTR ERV1 -676 255 183 199 269 240 34 chr6 182319503 182319678 -6959876 + L2 LINE L2 2844 3054 -218 310 275 14 0 chr6 182320485 182320554 -6959000 - L2 LINE L2 -5 3308 3239 6039 93 6 13 chr6 182320678 182321541 -6958013 - L1PA10 LINE L1 -16 6152 5296 21 0 0 0 chr6 182321627 182321648 -6957906 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 182321918 182321940 -6957614 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 182322119 182322149 -6957405 + AT_rich Low_complexity Low_complexity 1 30 0 1275 105 0 0 chr6 182322687 182322878 -6956676 - L1P4 LINE L1 -671 5497 5307 953 168 31 44 chr6 182323018 182323244 -6956310 - L1MB2 LINE L1 -7 6164 5942 289 335 62 28 chr6 182325943 182326122 -6953432 - MIR3 SINE MIR -3 205 21 977 269 136 23 chr6 182327342 182327732 -6951822 - MLT1J2 LTR MaLR -16 434 1 42961 32 21 1 chr6 182327762 182333790 -6945764 - L1PA2 LINE L1 -1 6154 3 424 263 28 22 chr6 182333908 182334087 -6945467 - L1MEc LINE L1 -6209 187 8 21 0 0 0 chr6 182334307 182334328 -6945226 + AT_rich Low_complexity Low_complexity 1 21 0 839 293 76 16 chr6 182335102 182335536 -6944018 - LTR16B LTR ERVL -4 460 1 202 246 14 14 chr6 182335617 182335686 -6943868 + L2 LINE L2 2440 2508 -806 193 297 64 64 chr6 182336302 182336504 -6943050 + L2 LINE L2 2853 3054 -218 186 367 75 38 chr6 182336861 182337232 -6942322 - L2 LINE L2 -358 2956 2572 197 279 88 44 chr6 182337949 182338017 -6941537 - L2 LINE L2 -34 3279 3209 4102 208 65 12 chr6 182339467 182340286 -6939268 + MER21B LTR ERV1 1 862 -1 1134 262 41 8 chr6 182340539 182340928 -6938626 - Charlie2 DNA MER1_type -3 2859 2458 605 164 20 14 chr6 182341070 182341216 -6938338 + GA-rich Low_complexity Low_complexity 2 148 0 1741 212 49 22 chr6 182341693 182342146 -6937408 - Charlie2 DNA MER1_type -542 2320 1856 842 257 75 29 chr6 182342152 182342459 -6937095 - Charlie2 DNA MER1_type -2541 321 1 736 116 0 0 chr6 182342728 182342930 -6936624 + L1PA14 LINE L1 5882 6148 -13 420 247 109 60 chr6 182342942 182343129 -6936425 + MIR SINE MIR 64 262 0 205 321 49 12 chr6 182343361 182343442 -6936112 + L2 LINE L2 3184 3267 -5 526 296 55 27 chr6 182344243 182344463 -6935091 + MIR SINE MIR 36 261 -1 1813 156 0 7 chr6 182345214 182345528 -6934026 - AluJo SINE Alu 0 312 1 186 182 0 0 chr6 182345603 182345636 -6933918 + MIR SINE MIR 76 108 -100 1930 141 66 33 chr6 182347284 182347647 -6931907 - THE1C LTR MaLR 0 375 1 1141 256 83 9 chr6 182347653 182347994 -6931560 - MER39 LTR ERV1 0 707 211 430 237 119 20 chr6 182348071 182348220 -6931334 - MER39 LTR ERV1 -397 145 3 453 217 50 28 chr6 182348636 182348819 -6930735 + MER39 LTR ERV1 1 282 -425 1479 167 22 38 chr6 182348857 182349175 -6930379 + MER39 LTR ERV1 395 707 0 316 253 25 13 chr6 182352420 182352499 -6927055 + MIR3 SINE MIR 103 182 -26 467 273 100 27 chr6 182352794 182353014 -6926540 - MIR SINE MIR -11 251 16 238 250 50 0 chr6 182353537 182353597 -6925957 - L2 LINE L2 0 3313 3251 307 329 14 34 chr6 182357012 182357158 -6922396 + MIR SINE MIR 10 152 -110 209 281 141 44 chr6 182357412 182357547 -6922007 + MIR SINE MIR 26 173 -89 305 250 12 12 chr6 182358335 182358419 -6921135 + MIR3 SINE MIR 125 208 0 1794 104 0 4 chr6 182359599 182359840 -6919714 - L1PB1 LINE L1 -2 6149 5910 256 338 109 29 chr6 182360102 182360312 -6919242 - L2 LINE L2 -45 3268 3042 2436 43 4 0 chr6 182360806 182361132 -6918422 + AluY SINE Alu 1 327 0 295 275 82 58 chr6 182361205 182361376 -6918178 - MIR SINE MIR -56 206 32 192 40 0 0 chr6 182362372 182362397 -6917157 + (TG)n Simple_repeat Simple_repeat 2 26 0 213 39 0 0 chr6 182363321 182363347 -6916207 + (TA)n Simple_repeat Simple_repeat 2 27 0 192 254 0 17 chr6 182363936 182364117 -6915437 + (CA)n Simple_repeat Simple_repeat 1 178 0 510 344 0 0 chr6 182364133 182364313 -6915241 + (CA)n Simple_repeat Simple_repeat 1 180 0 608 219 0 7 chr6 182364331 182364643 -6914911 + (CA)n Simple_repeat Simple_repeat 1 309 0 3301 67 10 0 chr6 182365602 182366078 -6913476 - L1PA7 LINE L1 -739 5433 4955 5867 54 19 0 chr6 182366078 182366765 -6912789 + L1PA7 LINE L1 5451 6152 -2 356 275 0 8 chr6 182367719 182367840 -6911714 + L1M2a LINE L1 1 119 -7090 415 268 9 18 chr6 182368815 182368927 -6910627 - L2 LINE L2 0 3313 3203 238 315 76 22 chr6 182372170 182372262 -6907292 + L2 LINE L2 3212 3308 -5 309 51 0 0 chr6 182372854 182372893 -6906661 + (TG)n Simple_repeat Simple_repeat 2 40 0 809 159 73 46 chr6 182372914 182373065 -6906489 - Tigger2 DNA MER2_type -10 2708 2554 * 1144 148 24 29 chr6 182373062 182373104 -6906450 - Tigger2 DNA MER2_type -2510 208 167 1632 155 40 43 chr6 182373104 182373408 -6906146 - AluJb SINE Alu -8 304 2 1144 148 24 29 chr6 182373408 182373574 -6905980 - Tigger2 DNA MER2_type -2551 167 1 426 202 65 9 chr6 182373617 182373759 -6905795 + L1MC4 LINE L1 7880 7995 0 2137 131 0 10 chr6 182374426 182374740 -6904814 - AluSx SINE Alu -1 311 1 801 151 89 0 chr6 182374740 182374886 -6904668 - MER82 DNA MER2_type -458 195 37 192 200 0 0 chr6 182374912 182374952 -6904602 + (TG)n Simple_repeat Simple_repeat 1 40 0 712 209 99 62 chr6 182374952 182375225 -6904329 - L1MC4 LINE L1 -124 7918 7636 1100 139 79 0 chr6 182375225 182375390 -6904164 - AluSg1 SINE Alu -129 180 3 26 0 0 0 chr6 182375997 182376023 -6903531 + AT_rich Low_complexity Low_complexity 1 26 0 1505 99 0 5 chr6 182376090 182376282 -6903272 - AluSx SINE Alu -25 285 95 683 151 0 19 chr6 182376315 182376421 -6903133 - AluSx SINE Alu -208 105 2 799 218 46 0 chr6 182377049 182377223 -6902331 - MLT1A1 LTR MaLR 0 365 184 2165 276 78 69 chr6 182379793 182382043 -6897511 + HERVL40 LTR ERVL 2329 4579 -951 283 356 44 19 chr6 182382942 182383102 -6896452 + MER89-int LTR ERV1 6175 6338 -463 1257 135 17 57 chr6 182384231 182384461 -6895093 + AluJb SINE Alu 84 304 -8 1462 258 158 22 chr6 182385236 182386008 -6893546 + MER69 DNA AcHobo 2 907 -402 1957 212 51 10 chr6 182386013 182386499 -6893055 + MER69 DNA AcHobo 1711 2216 -310 273 186 51 0 chr6 182386497 182386556 -6892998 + MER69 DNA AcHobo 2441 2502 -24 * 238 213 67 13 chr6 182387293 182387368 -6892186 + L2 LINE L2 3147 3225 -47 1226 212 20 0 chr6 182387688 182387933 -6891621 + MIR SINE MIR 12 261 -1 329 299 75 0 chr6 182388990 182389137 -6890417 - MIR SINE MIR -96 166 9 181 217 132 28 chr6 182389662 182389768 -6889786 + L2 LINE L2 1944 2060 -1254 649 319 149 20 chr6 182389783 182390225 -6889329 + L2 LINE L2 2815 3313 0 793 344 62 9 chr6 182390255 182390592 -6888962 + L3 LINE CR1 1206 1560 -17 347 336 104 18 chr6 182390897 182391117 -6888437 + MARNA DNA Mariner 281 519 -67 23 33 0 0 chr6 182392477 182392507 -6887047 + AT_rich Low_complexity Low_complexity 1 30 0 2239 117 39 25 chr6 182392530 182392889 -6886665 - THE1B LTR MaLR 0 364 1 1948 217 40 13 chr6 182393033 182393485 -6886069 - MLT2C2 LTR ERVL 0 464 1 303 320 0 0 chr6 182394636 182394711 -6884843 - MIR3 SINE MIR -24 184 110 355 257 53 0 chr6 182394988 182395101 -6884453 + MER94 DNA DNA 16 134 0 24 32 0 0 chr6 182396861 182396892 -6882662 + AT_rich Low_complexity Low_complexity 1 31 0 485 305 86 57 chr6 182397511 182398056 -6881498 - MLT1K LTR MaLR -8 580 20 2557 56 0 0 chr6 182398443 182398746 -6880808 + AluY SINE Alu 1 303 -8 327 345 35 53 chr6 182398868 182399039 -6880515 + L2 LINE L2 3104 3271 -1 629 251 25 25 chr6 182399138 182399301 -6880253 + MIR SINE MIR 2 164 -98 434 294 57 28 chr6 182399296 182399473 -6880081 - MIR SINE MIR -53 209 28 * 661 305 183 25 chr6 182400892 182401292 -6878262 - LTR33 LTR ERVL -55 466 4 341 320 48 66 chr6 182401296 182401568 -6877986 - L1ME3A LINE L1 -312 5858 5592 271 269 82 0 chr6 182401578 182401687 -6877867 - L1ME3A LINE L1 -613 5551 5431 2190 123 0 0 chr6 182401739 182402039 -6877515 - AluSg SINE Alu -10 300 1 3458 223 88 51 chr6 182402288 182404442 -6875112 - L1ME1 LINE L1 -11 6433 4174 523 163 51 0 chr6 182404457 182404555 -6874999 - MER58 DNA MER1_type 0 2420 2318 229 326 11 43 chr6 182404567 182404659 -6874895 - MER58 DNA MER1_type -242 99 11 2171 253 64 24 chr6 182404670 182405729 -6873825 - L1ME1 LINE L1 -3981 2445 1191 185 307 78 78 chr6 182406289 182406442 -6873112 + MIR SINE MIR 69 221 -41 24 77 0 0 chr6 182408057 182408109 -6871445 + AT_rich Low_complexity Low_complexity 1 52 0 32 57 0 0 chr6 182409040 182409093 -6870461 + AT_rich Low_complexity Low_complexity 1 53 0 252 213 0 0 chr6 182409339 182409400 -6870154 + GA-rich Low_complexity Low_complexity 2 62 0 183 326 35 12 chr6 182409401 182409487 -6870067 + MIR SINE MIR 64 151 -111 424 287 44 15 chr6 182410656 182410792 -6868762 - MER5B DNA MER1_type -6 172 33 431 184 0 0 chr6 182410822 182410909 -6868645 - L1MA5 LINE L1 -1 6299 6213 1537 179 227 19 chr6 182411052 182411537 -6868017 - LTR60 LTR ERV1 0 586 1 9970 165 38 26 chr6 182411538 182413892 -6865662 - L1MA5 LINE L1 -80 6220 3895 14791 120 25 0 chr6 182413892 182416970 -6862584 + L1PA10 LINE L1 3047 6158 -10 225 65 0 0 chr6 182416976 182417007 -6862547 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9970 165 38 26 chr6 182417007 182417600 -6861954 - L1MA5 LINE L1 -2409 3891 3232 8736 168 34 16 chr6 182417643 182420306 -6859248 - L1MA4 LINE L1 -3 6999 4291 1979 189 39 21 chr6 182420305 182420791 -6858763 - L1ME1 LINE L1 -803 5343 4849 * 2912 234 48 16 chr6 182420791 182421583 -6857971 + L1ME1 LINE L1 5345 6161 -5 5755 186 46 27 chr6 182421603 182422877 -6856677 - L1MA4 LINE L1 -2542 4306 3058 1911 190 37 48 chr6 182422877 182423153 -6856401 - MSTB1 LTR MaLR 0 432 161 2227 101 10 0 chr6 182423153 182423459 -6856095 + AluSx SINE Alu 3 311 -1 1911 190 37 48 chr6 182423459 182423619 -6855935 - MSTB1 LTR MaLR -271 161 1 5755 186 46 27 chr6 182423619 182424935 -6854619 - L1MA4 LINE L1 -3790 3058 1664 2099 150 33 28 chr6 182425116 182425477 -6854077 - THE1B LTR MaLR 0 364 2 32 26 0 0 chr6 182425806 182425845 -6853709 + AT_rich Low_complexity Low_complexity 1 39 0 528 182 98 7 chr6 182426335 182426478 -6853076 - MER3 DNA MER1_type 0 2624 2469 280 278 69 0 chr6 182426476 182426548 -6853006 - MER3 DNA MER1_type -92 117 41 * 4421 95 0 3 chr6 182427071 182427692 -6851862 - L1PB1 LINE L1 0 6151 5533 2681 115 0 3 chr6 182427692 182428196 -6851358 - L1P5 LINE L1 -519 5632 5131 1660 234 24 0 chr6 182428191 182428602 -6850952 + L1 LINE L1 4750 5170 -976 * 306 320 0 25 chr6 182428696 182428818 -6850736 + CT-rich Low_complexity Low_complexity 1 119 0 234 0 0 0 chr6 182428846 182428872 -6850682 + (TG)n Simple_repeat Simple_repeat 2 27 0 330 390 7 0 chr6 182429246 182429400 -6850154 - MIR3 SINE MIR 0 208 54 213 39 0 0 chr6 182429550 182429576 -6849978 + (TC)n Simple_repeat Simple_repeat 1 26 0 207 259 36 9 chr6 182429583 182429695 -6849859 + CT-rich Low_complexity Low_complexity 2 116 0 480 122 0 0 chr6 182430166 182430248 -6849306 + (TG)n Simple_repeat Simple_repeat 1 82 0 544 96 48 19 chr6 182430836 182430940 -6848614 + L1MA7 LINE L1 6185 6291 0 346 289 53 33 chr6 182431442 182431746 -6847808 - L1MEd LINE L1 -4914 1205 896 12526 177 30 8 chr6 182431959 182434171 -6845383 + L1MA4A LINE L1 2 2261 -4588 9417 185 34 9 chr6 182434202 182436367 -6843187 + L1MA4A LINE L1 2703 4923 -1925 308 192 55 0 chr6 182436420 182436493 -6843061 - L1MCa LINE L1 -4346 2080 2004 337 208 29 0 chr6 182436517 182436690 -6842864 + (TA)n Simple_repeat Simple_repeat 1 178 0 301 164 60 15 chr6 182436694 182436761 -6842793 - L1MCa LINE L1 -4362 2064 1995 282 73 0 0 chr6 182436765 182436806 -6842748 + (TA)n Simple_repeat Simple_repeat 1 41 0 5770 165 54 12 chr6 182436806 182438801 -6840753 + L1MA4A LINE L1 4928 7004 -1 22 56 0 0 chr6 182439213 182439249 -6840305 + AT_rich Low_complexity Low_complexity 1 36 0 2246 62 0 38 chr6 182439385 182439706 -6839848 + AluY SINE Alu 1 310 0 26 0 0 0 chr6 182440110 182440136 -6839418 + AT_rich Low_complexity Low_complexity 1 26 0 2743 171 13 62 chr6 182440271 182440867 -6838687 - MER101B LTR ERV1 -2 568 2 2527 65 3 19 chr6 182543036 182543346 -6736208 - AluY SINE Alu -6 305 1 360 188 47 35 chr6 182544025 182544110 -6735444 + L1MCa LINE L1 1980 2065 -4361 359 255 64 0 chr6 182544076 182544159 -6735395 - L1MC4 LINE L1 -1339 6703 6612 * 2142 109 7 7 chr6 182544159 182544443 -6735111 - AluSg SINE Alu -26 284 1 515 278 13 20 chr6 182546280 182546320 -6733234 - MIR SINE MIR -19 243 204 948 215 16 0 chr6 182546320 182546506 -6733048 - MER5A DNA MER1_type 0 189 1 515 278 13 20 chr6 182546506 182546616 -6732938 - MIR SINE MIR -58 204 94 2517 139 46 10 chr6 182547900 182548317 -6731237 + MSTB1 LTR MaLR 1 432 0 252 0 0 0 chr6 182549410 182549438 -6730116 + (CA)n Simple_repeat Simple_repeat 2 29 0 382 368 36 29 chr6 182549558 182549845 -6729709 - L1MEc LINE L1 -663 1699 434 1792 119 0 8 chr6 182550264 182550507 -6729047 + AluSx SINE Alu 40 280 -32 1232 225 56 49 chr6 182550511 182550942 -6728612 + MLT1C LTR MaLR 22 455 -12 3302 119 14 2 chr6 182550978 182551473 -6728081 - L1PA13 LINE L1 0 6163 5663 200 359 48 54 chr6 182552560 182552607 -6726947 - MER91A DNA MER1_type -30 166 120 1668 129 241 11 chr6 182552607 182552786 -6726768 - MSTA LTR MaLR 0 428 291 228 35 0 0 chr6 182552786 182552815 -6726739 + (GA)n Simple_repeat Simple_repeat 1 29 0 1668 129 241 11 chr6 182552815 182552983 -6726571 - MSTA LTR MaLR -137 291 1 1478 161 79 45 chr6 182552990 182553343 -6726211 + MLT1A1 LTR MaLR 1 365 0 200 359 48 54 chr6 182553343 182553454 -6726100 - MER91A DNA MER1_type -82 114 1 2189 161 57 10 chr6 182553747 182554132 -6725422 + MER57A LTR ERV1 1 403 0 1790 115 0 4 chr6 182554303 182554546 -6725008 + AluSx SINE Alu 1 242 -70 2444 89 3 0 chr6 182555094 182555396 -6724158 - AluSx SINE Alu -9 303 1 2625 61 0 0 chr6 182556040 182556351 -6723203 + AluY SINE Alu 1 311 0 364 297 57 102 chr6 182556495 182556548 -6723006 + L1ME LINE L1 5380 5434 -687 2379 109 3 0 chr6 182556548 182556859 -6722695 + AluSx SINE Alu 1 312 0 364 297 57 102 chr6 182556859 182557088 -6722466 + L1ME LINE L1 5434 5649 -472 2214 113 0 7 chr6 182557099 182557391 -6722163 - AluSg SINE Alu -20 290 1 461 291 179 48 chr6 182557464 182557901 -6721653 - L1MC4a LINE L1 -1290 6518 6025 2080 144 0 10 chr6 182557923 182558221 -6721333 - AluSx SINE Alu -17 295 1 1509 294 62 10 chr6 182558226 182558821 -6720733 - L1MC4a LINE L1 -1868 5940 5315 1333 209 87 3 chr6 182559051 182559419 -6720135 - MER90 LTR ERV1 0 614 216 835 72 40 0 chr6 182559419 182559544 -6720010 - MSTA LTR MaLR -298 130 1 523 191 105 56 chr6 182559544 182559706 -6719848 - MER90 LTR ERV1 -412 202 33 189 355 118 20 chr6 182560488 182560640 -6718914 + MIR SINE MIR 88 254 -8 939 129 0 0 chr6 182561655 182561833 -6717721 + (TA)n Simple_repeat Simple_repeat 2 179 0 1911 114 41 4 chr6 182561835 182562106 -6717448 - AluSx SINE Alu -31 281 1 1719 217 35 62 chr6 182562334 182562846 -6716708 + MLT1D LTR MaLR 1 498 -7 288 205 181 12 chr6 182563703 182563786 -6715768 + MLT1D LTR MaLR 405 501 -4 2156 75 44 7 chr6 182564630 182564925 -6714629 - AluSc SINE Alu -3 306 1 259 319 82 47 chr6 182565054 182565286 -6714268 - L2 LINE L2 -86 3227 2988 1405 226 120 54 chr6 182566154 182566461 -6713093 - MLT1F1 LTR MaLR 0 567 214 2665 105 6 3 chr6 182566461 182566822 -6712732 + THE1B LTR MaLR 1 362 -2 1405 226 120 54 chr6 182566822 182567052 -6712502 - MLT1F1 LTR MaLR -353 214 1 447 218 46 29 chr6 182568425 182568599 -6710955 + (TGAG)n Simple_repeat Simple_repeat 2 178 0 249 271 0 0 chr6 182568600 182568777 -6710777 + (TG)n Simple_repeat Simple_repeat 1 177 0 304 295 60 47 chr6 182569555 182569704 -6709850 - MIR SINE MIR -72 190 40 416 285 145 23 chr6 182570530 182570702 -6708852 - MIR SINE MIR -54 208 16 888 230 0 25 chr6 182571476 182571672 -6707882 + MER58A DNA MER1_type 1 191 -33 648 66 0 28 chr6 182571672 182571778 -6707776 + (TTTC)n Simple_repeat Simple_repeat 3 105 0 2340 79 3 7 chr6 182571780 182572070 -6707484 - AluSq SINE Alu -18 295 7 280 160 0 0 chr6 182572079 182572129 -6707425 + MER58A DNA MER1_type 175 224 0 180 330 99 0 chr6 182572284 182572375 -6707179 + MIR3 SINE MIR 12 111 -97 2440 72 0 3 chr6 182574266 182574573 -6704981 - AluY SINE Alu -5 306 1 321 159 0 0 chr6 182574589 182574652 -6704902 + GA-rich Low_complexity Low_complexity 2 64 0 532 221 138 80 chr6 182574779 182575177 -6704377 + MLT1H LTR MaLR 114 534 -15 1586 99 0 0 chr6 182576160 182576362 -6703192 - AluY SINE Alu -6 305 104 2491 51 0 7 chr6 182576530 182576823 -6702731 + AluY SINE Alu 7 297 -14 962 253 32 47 chr6 182576847 182577187 -6702367 - MLT1E1 LTR MaLR 0 654 320 295 212 35 24 chr6 182577278 182577363 -6702191 - MLT1E1 LTR MaLR -549 105 20 768 186 122 20 chr6 182577423 182577706 -6701848 - MLT1A1 LTR MaLR 0 365 45 2461 86 0 0 chr6 182577718 182578010 -6701544 + AluSc SINE Alu 4 295 -14 292 156 62 47 chr6 182578012 182578076 -6701478 - MLT1A1 LTR MaLR -300 65 1 436 182 34 0 chr6 182579342 182579430 -6700124 - MER5A DNA MER1_type -2 187 97 354 257 38 19 chr6 182579981 182580086 -6699468 + MER5A DNA MER1_type 9 115 -74 242 336 42 25 chr6 182580152 182580271 -6699283 - MER5A DNA MER1_type -10 179 59 725 199 108 0 chr6 182580537 182580703 -6698851 + MER20 DNA MER1_type 36 219 0 660 199 19 112 chr6 182580713 182580919 -6698635 + MER5A DNA MER1_type 3 189 0 2375 103 0 0 chr6 182581587 182581888 -6697666 - AluSx SINE Alu -11 301 1 234 279 6 0 chr6 182582360 182582425 -6697129 - MIR SINE MIR -82 126 85 2154 134 0 0 chr6 182582725 182583017 -6696537 - AluSx SINE Alu -20 292 1 794 244 94 8 chr6 182583127 182583381 -6696173 + MLT1J1 LTR MaLR 1 276 -170 320 293 30 0 chr6 182583504 182583603 -6695951 + MIR SINE MIR 47 148 -114 736 255 105 20 chr6 182583740 182583987 -6695567 + MER102a DNA MER1_type 60 327 -3 857 204 5 47 chr6 182585430 182585621 -6693933 + MER5A DNA MER1_type 7 189 0 303 225 246 28 chr6 182585787 182585929 -6693625 - MER5B DNA MER1_type 0 178 6 2394 99 3 19 chr6 182586103 182586417 -6693137 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr6 182586699 182586720 -6692834 + AT_rich Low_complexity Low_complexity 1 21 0 2174 359 52 20 chr6 182587065 182588730 -6690824 - MERVL LTR ERVL -671 4814 3096 1624 205 15 43 chr6 182588840 182589231 -6690323 + MLT2C1 LTR ERVL 1 380 -17 337 293 115 26 chr6 182589239 182589430 -6690124 + L1M4 LINE L1 3006 3213 -2933 308 260 87 63 chr6 182589754 182589881 -6689673 + L1M4 LINE L1 3850 3979 -2167 2288 170 65 0 chr6 182590433 182590832 -6688722 + MSTB LTR MaLR 2 426 0 307 188 0 24 chr6 182591541 182591626 -6687928 + T-rich Low_complexity Low_complexity 4 86 0 627 273 55 29 chr6 182591676 182591914 -6687640 - HAL1 LINE L1 -46 2461 2218 1455 254 52 56 chr6 182591944 182592032 -6687522 - HAL1 LINE L1 -479 2028 1941 979 127 0 0 chr6 182592032 182592174 -6687380 + L1MA1 LINE L1 6160 6301 -1 1455 254 52 56 chr6 182592174 182592659 -6686895 - HAL1 LINE L1 -566 1941 1457 595 243 42 42 chr6 182592674 182592958 -6686596 - HAL1 LINE L1 -1122 1385 1102 234 320 60 0 chr6 182593012 182593112 -6686442 - MLT1J LTR MaLR -79 432 327 857 269 5 5 chr6 182593187 182593395 -6686159 - MLT1J LTR MaLR -303 208 1 385 242 101 27 chr6 182596165 182596384 -6683170 + MIR SINE MIR 14 248 -14 194 343 22 8 chr6 182596468 182596602 -6682952 - L2 LINE L2 -220 3052 2917 303 215 0 0 chr6 182598373 182598494 -6681060 + (CA)n Simple_repeat Simple_repeat 2 122 0 608 177 0 11 chr6 182598513 182598694 -6680860 + (CA)n Simple_repeat Simple_repeat 2 180 0 408 233 0 0 chr6 182598741 182598913 -6680641 + (CA)n Simple_repeat Simple_repeat 2 173 0 259 365 104 10 chr6 182599558 182599750 -6679804 - MIR SINE MIR -12 250 41 227 164 127 0 chr6 182599876 182599931 -6679623 - MIR SINE MIR -66 142 81 2377 67 40 3 chr6 182601921 182602221 -6677333 - AluY SINE Alu 0 311 1 260 200 55 0 chr6 182602353 182602408 -6677146 - MLT1I LTR MaLR -326 83 26 368 316 42 16 chr6 182604594 182604784 -6674770 + MLT1I LTR MaLR 51 245 -164 2182 87 7 13 chr6 182605297 182605623 -6673931 + AluY SINE Alu 1 311 0 190 315 27 67 chr6 182606080 182606229 -6673325 - L3 LINE CR1 -218 1359 1217 2885 115 14 7 chr6 182606823 182607248 -6672306 - MSTA LTR MaLR 0 428 1 185 191 64 7 chr6 182609232 182609373 -6670181 + (TA)n Simple_repeat Simple_repeat 2 150 0 6317 87 21 10 chr6 182609421 182610293 -6669261 + HERVL-A2 LTR ERVL 4774 5654 0 2121 165 33 39 chr6 182610293 182610851 -6668703 + MLT2A2 LTR ERVL 1 554 0 866 177 177 5 chr6 182611917 182612118 -6667436 + MLT1E1 LTR MaLR 2 239 -415 1515 145 46 0 chr6 182612118 182612359 -6667195 + MER54B LTR ERVL 4 255 -538 * 2698 133 14 18 chr6 182612358 182612794 -6666760 + MER54B LTR ERVL 360 793 0 1110 241 17 20 chr6 182612794 182613131 -6666423 + MLT1E1 LTR MaLR 227 654 0 428 50 0 17 chr6 182613582 182613642 -6665912 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 22 0 0 0 chr6 182613642 182613664 -6665890 + AT_rich Low_complexity Low_complexity 1 22 0 661 202 62 0 chr6 182613671 182613800 -6665754 - FRAM SINE Alu -39 137 1 702 264 92 65 chr6 182614761 182615789 -6663765 - L1MEc LINE L1 -2869 3260 2205 348 94 0 0 chr6 182615794 182615847 -6663707 + (TG)n Simple_repeat Simple_repeat 2 54 0 341 289 52 47 chr6 182615907 182616236 -6663318 - L1MEc LINE L1 -3941 2218 1888 994 250 85 72 chr6 182616307 182616918 -6662636 - L1MEc LINE L1 -4866 1253 635 356 259 59 30 chr6 182616961 182617096 -6662458 - L1MEc LINE L1 -5589 530 392 32 43 0 0 chr6 182617292 182617338 -6662216 + AT_rich Low_complexity Low_complexity 1 46 0 627 304 88 4 chr6 182618909 182619136 -6660418 + MIR SINE MIR 12 257 -5 267 227 0 0 chr6 182619240 182619306 -6660248 + (TG)n Simple_repeat Simple_repeat 2 67 0 793 256 28 9 chr6 182620297 182620508 -6659046 - MIR SINE MIR -10 252 38 584 279 64 27 chr6 182620556 182620853 -6658701 + MLT2C1 LTR ERVL 13 320 -77 191 213 43 0 chr6 182622909 182622956 -6656598 - MIR SINE MIR -116 146 98 215 354 78 21 chr6 182623715 182623907 -6655647 - L2 LINE L2 -103 3169 2967 548 259 40 81 chr6 182625005 182625252 -6654302 - MIR SINE MIR -8 254 18 1085 182 34 0 chr6 182625390 182625599 -6653955 + MER20 DNA MER1_type 1 216 -3 2416 74 0 7 chr6 182626323 182626632 -6652922 - AluY SINE Alu -4 307 1 21 71 0 0 chr6 182626963 182627005 -6652549 + AT_rich Low_complexity Low_complexity 1 42 0 1963 176 218 13 chr6 182628956 182629406 -6650148 - MER44D DNA MER2_type -7 698 157 2195 166 31 32 chr6 182629406 182629960 -6649594 - MLT2A2 LTR ERVL 0 554 2 796 177 43 0 chr6 182629970 182630111 -6649443 - MER44D DNA MER2_type -558 147 1 793 164 8 0 chr6 182630397 182630525 -6649029 + FLAM_A SINE Alu 8 136 -6 1346 143 82 0 chr6 182630549 182630794 -6648760 + L1MA5A LINE L1 6031 6295 -2 721 236 228 31 chr6 182631089 182631570 -6647984 - LTR50 LTR ERVL -122 673 8 772 266 123 17 chr6 182631729 182632026 -6647528 + MLT1G1 LTR MaLR 1 253 -277 27 0 0 0 chr6 182632037 182632064 -6647490 + AT_rich Low_complexity Low_complexity 1 27 0 189 288 270 15 chr6 182632126 182632400 -6647154 - L2 LINE L2 -1017 2297 1954 1838 191 84 9 chr6 182632425 182632855 -6646699 - MLT1C LTR MaLR 0 467 6 223 358 85 11 chr6 182635731 182635907 -6643647 - L2 LINE L2 -665 2649 2461 691 248 69 24 chr6 182636128 182636374 -6643180 - MLT1H1 LTR MaLR -7 548 292 936 239 153 63 chr6 182637098 182637232 -6642322 - MLT1H1 LTR MaLR -2 553 432 1810 188 8 27 chr6 182637232 182637604 -6641950 + MLT1A1 LTR MaLR 1 365 0 936 239 153 63 chr6 182637604 182637895 -6641659 - MLT1H1 LTR MaLR -123 432 90 1940 125 69 0 chr6 182638195 182638483 -6641071 - AluSx SINE Alu -4 308 1 300 218 35 35 chr6 182638586 182638673 -6640881 - MLT1H1 LTR MaLR -463 92 6 185 281 12 49 chr6 182639058 182639140 -6640414 + MIR SINE MIR 51 129 -79 546 222 93 0 chr6 182639905 182640067 -6639487 + MER5A DNA MER1_type 6 182 -7 190 323 161 0 chr6 182645751 182645844 -6633710 - L2 LINE L2 -25 3288 3181 293 199 19 31 chr6 182646457 182646618 -6632936 + C-rich Low_complexity Low_complexity 3 161 0 274 320 6 6 chr6 182646723 182646824 -6632730 + CT-rich Low_complexity Low_complexity 3 172 0 1296 214 139 0 chr6 182647409 182647726 -6631828 + MLT1A1 LTR MaLR 5 365 0 346 291 50 73 chr6 182648991 182649111 -6630443 - MIR SINE MIR -18 244 128 2106 98 0 94 chr6 182649111 182649439 -6630115 + AluSx SINE Alu 1 297 -15 346 291 50 73 chr6 182649439 182649497 -6630057 - MIR SINE MIR -134 128 70 241 271 57 0 chr6 182649736 182649806 -6629748 - MLT1I LTR MaLR -16 393 320 261 178 78 0 chr6 182650283 182650373 -6629181 + (TCTA)n Simple_repeat Simple_repeat 3 99 0 338 325 85 15 chr6 182650386 182650586 -6628968 + L2 LINE L2 3096 3309 -4 1439 201 85 65 chr6 182650950 182651408 -6628146 - MLT1C LTR MaLR 0 467 1 577 300 18 12 chr6 182651706 182651876 -6627678 + MIR3 SINE MIR 20 190 -18 359 225 232 7 chr6 182653448 182653590 -6625964 - MER104 DNA MER2_type -3 177 4 231 262 83 0 chr6 182653603 182653687 -6625867 - MIR SINE MIR -10 252 162 619 277 112 68 chr6 182653690 182654073 -6625481 - MLT1I LTR MaLR 0 409 10 748 221 7 0 chr6 182654089 182654234 -6625320 - MIR SINE MIR -114 148 3 364 268 14 56 chr6 182655817 182655959 -6623595 - MIR SINE MIR -46 216 81 339 296 35 0 chr6 182657171 182657286 -6622268 + MER69 DNA AcHobo 2406 2524 -2 359 274 49 0 chr6 182657897 182657999 -6621555 - MIR SINE MIR -80 182 76 279 272 0 0 chr6 182658229 182658321 -6621233 + (TG)n Simple_repeat Simple_repeat 1 92 0 276 298 159 20 chr6 182659669 182659820 -6619734 + MIR SINE MIR 14 185 -77 1905 124 95 0 chr6 182660312 182660595 -6618959 - AluSx SINE Alu -2 310 1 387 297 105 42 chr6 182661330 182661569 -6617985 - L1MC4a LINE L1 -1882 5926 5673 751 199 66 28 chr6 182661901 182662112 -6617442 + MER20 DNA MER1_type 1 219 0 442 284 31 49 chr6 182664419 182664581 -6614973 - MIR SINE MIR -92 170 12 263 233 12 70 chr6 182664980 182665066 -6614488 + MIR SINE MIR 165 245 -17 2060 105 0 61 chr6 182665154 182665491 -6614063 + AluSx SINE Alu 1 312 0 228 360 0 13 chr6 182666031 182666106 -6613448 + MIR3 SINE MIR 105 178 -30 231 206 206 0 chr6 182666288 182666356 -6613198 - MIR SINE MIR -91 171 90 534 229 154 0 chr6 182666861 182667036 -6612518 - L1MD2 LINE L1 -3 6356 6155 352 170 50 100 chr6 182667087 182667101 -6612453 + L1MD2 LINE L1 6026 6039 -320 1935 132 92 17 chr6 182667101 182667450 -6612104 - THE1C LTR MaLR 0 375 1 352 170 50 100 chr6 182667450 182667535 -6612019 + L1MD2 LINE L1 6039 6120 -239 354 319 81 32 chr6 182667725 182667910 -6611644 + MIR3 SINE MIR 9 202 -6 318 246 24 13 chr6 182668513 182668612 -6610942 - MLT1I LTR MaLR -261 148 66 500 316 107 0 chr6 182668918 182669086 -6610468 + MIR SINE MIR 77 262 0 182 253 50 91 chr6 182670731 182670830 -6608724 + L3 LINE CR1 1002 1096 -481 195 428 83 0 chr6 182670961 182671106 -6608448 + L2 LINE L2 3112 3268 -4 182 336 61 46 chr6 182671608 182671739 -6607815 + L3 LINE CR1 586 718 -859 352 335 35 9 chr6 182672228 182672395 -6607159 + MIR3 SINE MIR 31 198 -37 520 231 75 65 chr6 182673989 182674283 -6605271 - L1ME4a LINE L1 -32 6089 5793 360 236 87 68 chr6 182674350 182674511 -6605043 - L1ME4a LINE L1 -452 5669 5506 692 154 9 0 chr6 182674551 182674661 -6604893 - FLAM_A SINE Alu -21 121 11 897 218 18 9 chr6 182676522 182676742 -6602812 - L1MB3 LINE L1 -2 6181 5960 1339 198 48 40 chr6 182677210 182677564 -6601990 - MLT1B LTR MaLR -13 377 21 180 0 0 0 chr6 182678059 182678079 -6601475 + (T)n Simple_repeat Simple_repeat 1 20 0 473 319 45 33 chr6 182679342 182679507 -6600047 + MIR SINE MIR 10 182 -80 2067 150 0 6 chr6 182679507 182679820 -6599734 - AluJo SINE Alu 0 312 2 473 319 45 33 chr6 182679820 182679889 -6599665 + MIR SINE MIR 182 249 -13 2557 93 58 0 chr6 182680117 182680461 -6599093 - THE1B LTR MaLR 0 364 1 288 347 44 16 chr6 182681555 182681740 -6597814 + MIR SINE MIR 21 208 -54 189 49 24 49 chr6 182684468 182684509 -6595045 + (TCC)n Simple_repeat Simple_repeat 1 40 0 1880 139 4 0 chr6 182684848 182685115 -6594439 + AluSq SINE Alu 1 268 -45 2286 115 0 10 chr6 182686042 182686355 -6593199 - AluSx SINE Alu -2 310 1 529 276 60 27 chr6 182686475 182686660 -6592894 + MIR SINE MIR 31 221 -41 1792 171 24 89 chr6 182686876 182687151 -6592403 - MLT1C LTR MaLR -7 460 169 2262 88 3 20 chr6 182687151 182687445 -6592109 - AluY SINE Alu -22 289 1 2371 79 7 3 chr6 182687454 182687744 -6591810 - AluY SINE Alu -20 291 1 1792 171 24 89 chr6 182687744 182687950 -6591604 - MLT1C LTR MaLR -306 161 1 1258 342 99 29 chr6 182687979 182689095 -6590459 + L2 LINE L2 603 1797 -1517 4460 153 24 41 chr6 182689187 182689557 -6589997 - L1MB2 LINE L1 -7 6164 5789 342 0 0 0 chr6 182689557 182689595 -6589959 + (CA)n Simple_repeat Simple_repeat 2 39 0 2334 92 23 0 chr6 182689604 182689907 -6589647 - AluY SINE Alu -1 310 1 4460 153 24 41 chr6 182689907 182690420 -6589134 - L1MB2 LINE L1 -390 5781 5287 662 319 141 36 chr6 182690510 182691127 -6588427 + L2 LINE L2 1903 2619 -695 4153 103 4 2 chr6 182691127 182691680 -6587874 + MER41A LTR ERV1 1 554 0 662 319 141 36 chr6 182691680 182691835 -6587719 + L2 LINE L2 2619 2756 -558 2035 160 30 22 chr6 182691899 182692299 -6587255 + MER57A LTR ERV1 1 403 0 574 248 0 27 chr6 182692789 182692938 -6586616 + L2 LINE L2 3167 3311 -2 235 274 63 63 chr6 182693930 182694025 -6585529 + MIR SINE MIR 59 153 -109 246 359 11 0 chr6 182694176 182694268 -6585286 + MIR SINE MIR 159 251 -11 618 241 21 0 chr6 182694781 182694926 -6584628 - MLT1B LTR MaLR 0 390 243 1448 121 5 0 chr6 182694947 182695145 -6584409 - AluSq SINE Alu -114 199 1 1034 178 4 91 chr6 182695145 182695420 -6584134 - MLT1B LTR MaLR -139 251 1 1997 77 4 4 chr6 182695489 182695773 -6583781 + AluY SINE Alu 35 311 0 188 316 0 18 chr6 182697205 182697262 -6582292 + MIR3 SINE MIR 145 200 -8 2232 130 0 9 chr6 182698991 182699306 -6580248 + AluSx SINE Alu 1 312 0 23 0 0 0 chr6 182700521 182700544 -6579010 + AT_rich Low_complexity Low_complexity 1 23 0 277 365 54 12 chr6 182700582 182700749 -6578805 + MIR SINE MIR 34 207 -55 250 271 54 60 chr6 182701162 182701328 -6578226 + L1MEd LINE L1 255 419 -5953 599 263 55 91 chr6 182701493 182702216 -6577338 + L1MEd LINE L1 814 1510 -4862 756 314 105 35 chr6 182702225 182702950 -6576604 + L1MEd LINE L1 2189 2967 -3415 371 284 115 18 chr6 182702962 182703353 -6576201 + L1MEd LINE L1 3054 3482 -2900 34 42 0 0 chr6 182703409 182703457 -6576097 + AT_rich Low_complexity Low_complexity 1 48 0 1647 136 78 37 chr6 182703545 182703839 -6575715 + AluJo SINE Alu 1 306 -6 289 260 10 0 chr6 182703974 182704070 -6575484 + L1ME3A LINE L1 5855 5951 -219 288 317 129 35 chr6 182704349 182704551 -6575003 + LTR40a LTR ERVL 232 452 -67 2017 135 0 0 chr6 182704837 182705119 -6574435 - AluSx SINE Alu -20 292 11 938 186 71 71 chr6 182705452 182705855 -6573699 + L1MC5 LINE L1 6559 6966 -995 845 156 0 0 chr6 182705914 182706042 -6573512 - FLAM_A SINE Alu -5 128 1 632 242 81 95 chr6 182706058 182706691 -6572863 + L1MC5 LINE L1 7011 7634 -327 207 268 0 0 chr6 182707835 182707876 -6571678 + polypyrimidine Low_complexity Low_complexity 1 41 0 243 297 11 33 chr6 182707876 182707967 -6571587 - L2 LINE L2 0 3313 3225 187 273 136 0 chr6 182708550 182708616 -6570938 - L2 LINE L2 -599 2715 2641 2214 116 0 25 chr6 182708721 182709041 -6570513 - AluSx SINE Alu 0 312 1 505 336 35 17 chr6 182709718 182709950 -6569604 + MIR SINE MIR 23 258 -4 610 233 44 6 chr6 182710437 182710617 -6568937 + MER58A DNA MER1_type 34 220 -4 200 330 68 10 chr6 182711699 182711802 -6567752 + MIR SINE MIR 39 147 -61 248 77 26 0 chr6 182712080 182712119 -6567435 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 307 312 111 25 chr6 182712507 182712706 -6566848 - MIR SINE MIR -45 217 2 227 283 57 19 chr6 182712877 182712983 -6566571 + MIR SINE MIR 126 235 -27 2422 99 0 0 chr6 182714669 182714972 -6564582 + AluSx SINE Alu 1 303 -9 190 386 0 0 chr6 182715036 182715106 -6564448 + L2 LINE L2 3203 3272 0 2421 91 0 0 chr6 182715229 182715537 -6564017 + AluSx SINE Alu 1 308 -4 2402 77 0 0 chr6 182716481 182716779 -6562775 + AluSc SINE Alu 3 300 -9 583 303 147 67 chr6 182717095 182718305 -6561249 + L1MC4a LINE L1 2261 3567 -2579 431 73 0 0 chr6 182718345 182718400 -6561154 + Alu SINE Alu 224 278 -34 273 182 0 0 chr6 182718414 182718469 -6561085 + (TATG)n Simple_repeat Simple_repeat 2 56 0 183 167 0 0 chr6 182718575 182718617 -6560937 + (TA)n Simple_repeat Simple_repeat 2 43 0 284 288 65 6 chr6 182718794 182718964 -6560590 + L1MC4a LINE L1 3723 3902 -2244 365 262 47 143 chr6 182719060 182719462 -6560092 + L1MC4a LINE L1 4043 4429 -1717 307 297 31 31 chr6 182719539 182719734 -6559820 + L1MC4a LINE L1 4514 4708 -1438 1337 263 50 50 chr6 182720174 182720850 -6558704 + L1MC4a LINE L1 5255 5930 -1878 255 133 0 0 chr6 182720876 182720921 -6558633 + (GA)n Simple_repeat Simple_repeat 2 46 0 204 333 90 53 chr6 182721346 182721757 -6557797 + L2 LINE L2 2829 3254 -18 235 345 117 42 chr6 182722215 182722907 -6556647 + L2 LINE L2 2459 3268 -4 30 89 0 0 chr6 182723115 182723194 -6556360 + AT_rich Low_complexity Low_complexity 1 79 0 333 383 0 0 chr6 182723435 182723563 -6555991 - L3b LINE CR1 -352 1231 1104 3537 172 66 29 chr6 182724474 182725191 -6554363 + L1MB7 LINE L1 5188 5948 -236 1956 163 48 0 chr6 182725191 182725523 -6554031 + MER7A DNA MER2_type 1 346 0 3537 172 66 29 chr6 182725523 182725750 -6553804 + L1MB7 LINE L1 5948 6165 -19 238 212 0 15 chr6 182726005 182726071 -6553483 + A-rich Low_complexity Low_complexity 2 66 0 1323 302 76 41 chr6 182726073 182726858 -6552696 + MER110A-int LTR ERV1 223 1035 -3612 277 333 0 35 chr6 182727398 182727512 -6552042 + MER110A-int LTR ERV1 3789 3898 -2903 2191 90 7 0 chr6 182727514 182727803 -6551751 + AluSg SINE Alu 1 291 -19 1666 186 12 3 chr6 182727887 182728209 -6551345 + MER2 DNA MER2_type 20 344 -1 5082 265 59 50 chr6 182728341 182730396 -6549158 + MER110A-int LTR ERV1 1881 3954 -693 1145 251 20 17 chr6 182730614 182730964 -6548590 + MER110A-int LTR ERV1 4227 4577 -70 662 125 33 25 chr6 182731188 182731308 -6548246 + MER110A LTR ERV1 22 142 -326 2584 282 92 12 chr6 182731435 182732678 -6546876 + L1MEc LINE L1 58 1400 -4996 5328 89 25 35 chr6 182732685 182733231 -6546323 + L1PB1 LINE L1 5259 5794 -357 294 29 0 0 chr6 182733231 182733266 -6546288 + (CA)n Simple_repeat Simple_repeat 2 36 0 5328 89 25 35 chr6 182733266 182733620 -6545934 + L1PB1 LINE L1 5794 6150 -1 1087 286 78 2 chr6 182733636 182734125 -6545429 + L1MEc LINE L1 1429 1954 -4442 1574 91 0 113 chr6 182734125 182734390 -6545164 + AluSc SINE Alu 1 235 -74 3024 242 50 18 chr6 182834444 182835525 -6444029 - L1M4 LINE L1 -1281 4865 3750 30 0 0 0 chr6 182835548 182835578 -6443976 + AT_rich Low_complexity Low_complexity 1 30 0 329 293 65 0 chr6 182836120 182836243 -6443311 - L2 LINE L2 0 3313 3183 201 283 17 0 chr6 182837485 182837545 -6442009 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 226 191 21 0 chr6 182837840 182837887 -6441667 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 337 39 39 0 chr6 182839524 182839575 -6439979 + (TG)n Simple_repeat Simple_repeat 2 54 0 28 0 0 0 chr6 182841895 182841923 -6437631 + AT_rich Low_complexity Low_complexity 1 28 0 339 218 0 0 chr6 182841943 182842044 -6437510 + (TG)n Simple_repeat Simple_repeat 2 102 0 2129 119 0 0 chr6 182844094 182844380 -6435174 + AluSx SINE Alu 21 306 -6 284 347 35 6 chr6 182845029 182845199 -6434355 - L2 LINE L2 -923 2391 2217 1733 193 3 7 chr6 182845261 182845566 -6433988 + AluJb SINE Alu 3 306 -6 1215 93 17 6 chr6 182846318 182846490 -6433064 - L1P4 LINE L1 -369 5794 5621 4052 92 12 24 chr6 182846856 182847444 -6432110 - L1PA10 LINE L1 -2 6166 5586 2278 94 11 0 chr6 182850424 182850711 -6428843 + AluSc SINE Alu 1 290 -19 196 197 13 13 chr6 182850730 182850806 -6428748 + (TA)n Simple_repeat Simple_repeat 1 76 0 1746 187 33 0 chr6 182850932 182851232 -6428322 - AluJb SINE Alu -2 310 1 322 182 3 0 chr6 182852955 182853020 -6426534 - Alu SINE Alu 0 301 244 45 59 0 0 chr6 182853020 182853071 -6426483 + AT_rich Low_complexity Low_complexity 1 51 0 212 132 0 0 chr6 182853074 182853112 -6426442 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 746 256 28 0 chr6 182853871 182854051 -6425503 + MER63A DNA MER1_type 1 185 -25 4061 133 27 21 chr6 182856768 182857475 -6422079 + MER50 LTR ERV1 1 711 -23 2225 111 3 3 chr6 182858923 182859229 -6420325 - AluSx SINE Alu -6 306 1 313 264 74 8 chr6 182859678 182859799 -6419755 + MIR SINE MIR 78 206 -56 2155 137 3 0 chr6 182859879 182860178 -6419376 + AluSx SINE Alu 1 300 -12 232 250 0 29 chr6 182860705 182860773 -6418781 + CT-rich Low_complexity Low_complexity 1 66 0 913 165 72 47 chr6 182860791 182861027 -6418527 - ORSL DNA AcHobo -33 242 1 2078 113 7 10 chr6 182865519 182865819 -6413735 - AluSx SINE Alu -13 299 1 24 53 0 0 chr6 182866106 182866144 -6413410 + AT_rich Low_complexity Low_complexity 1 38 0 209 211 39 0 chr6 182866910 182866962 -6412592 + C-rich Low_complexity Low_complexity 3 56 0 4302 128 0 9 chr6 182867498 182868138 -6411416 - MER41B LTR ERV1 -1 634 1 1647 161 183 14 chr6 182869571 182869931 -6409623 + MSTA LTR MaLR 8 428 0 535 156 195 39 chr6 182870986 182871140 -6408414 - MLT1J LTR MaLR -7 504 327 705 91 0 10 chr6 182871147 182871246 -6408308 + MER4A LTR ERV1 1 98 -566 1691 117 26 22 chr6 182871246 182871588 -6407966 + MER4A LTR ERV1 261 662 -2 325 257 21 10 chr6 182871659 182871767 -6407787 - MLT1J LTR MaLR -289 161 60 2736 148 16 95 chr6 182871818 182872475 -6407079 - MER4B LTR ERV1 0 779 4 1638 37 0 0 chr6 182873028 182873217 -6406337 - L1PA3 LINE L1 -3 6152 5964 183 369 65 14 chr6 182874274 182874491 -6405063 + L2 LINE L2 1856 2083 -1231 326 269 178 14 chr6 182874606 182875147 -6404407 - L1ME LINE L1 -469 5652 5023 270 206 0 14 chr6 182875282 182875355 -6404199 - L1ME LINE L1 -1313 4833 4762 607 335 43 24 chr6 182875395 182875768 -6403786 - L1MEd LINE L1 -5432 687 308 24 0 0 0 chr6 182875820 182875844 -6403710 + AT_rich Low_complexity Low_complexity 1 24 0 227 354 62 0 chr6 182876583 182876679 -6402875 + MIR SINE MIR 21 122 -140 367 230 230 16 chr6 182876682 182876869 -6402685 - L2 LINE L2 -774 2540 2314 5298 50 5 0 chr6 182877644 182878287 -6401267 + L1PA6 LINE L1 5509 6154 0 268 173 91 64 chr6 182878631 182878741 -6400813 + MER5A DNA MER1_type 47 159 -30 445 262 116 0 chr6 182878788 182878952 -6400602 + MIR SINE MIR 46 228 -34 282 343 60 0 chr6 182879316 182879450 -6400104 + L2 LINE L2 3168 3309 -4 367 321 108 0 chr6 182882810 182883022 -6396532 - MIR SINE MIR -5 257 23 1248 157 147 26 chr6 182883293 182883484 -6396070 - MLT1A1 LTR MaLR 0 365 199 2228 92 3 35 chr6 182883484 182883799 -6395755 - AluSg SINE Alu -5 305 1 1248 157 147 26 chr6 182883799 182883919 -6395635 - MLT1A1 LTR MaLR -166 199 16 211 256 22 0 chr6 182884563 182884653 -6394901 + GA-rich Low_complexity Low_complexity 1 92 0 22 0 0 0 chr6 182885950 182885972 -6393582 + AT_rich Low_complexity Low_complexity 1 22 0 1043 176 121 17 chr6 182886302 182886541 -6393013 + ORSL DNA AcHobo 2 265 -10 2431 100 36 28 chr6 182886686 182887047 -6392507 + THE1B LTR MaLR 1 364 0 1370 93 0 0 chr6 182887177 182887349 -6392205 + AluSg/x SINE Alu 136 307 -5 211 339 99 8 chr6 182887812 182887933 -6391621 + L2 LINE L2 3136 3267 -5 289 207 195 0 chr6 182891307 182891389 -6388165 - MER103 DNA DNA -49 117 20 2128 112 14 0 chr6 182891544 182891831 -6387723 - AluY SINE Alu -20 291 1 191 243 0 27 chr6 182891877 182891951 -6387603 + (TAG)n Simple_repeat Simple_repeat 2 73 0 307 252 114 38 chr6 182892017 182892148 -6387406 + L2 LINE L2 3173 3313 0 723 275 27 75 chr6 182892785 182893159 -6386395 + L3 LINE CR1 1203 1558 -19 2604 253 77 10 chr6 182893555 182893694 -6385860 + L1ME3A LINE L1 5285 5413 -757 1907 138 19 19 chr6 182893694 182894006 -6385548 + AluJb SINE Alu 1 312 0 2604 253 77 10 chr6 182894006 182894688 -6384866 + L1ME3A LINE L1 5413 6161 -9 301 263 87 86 chr6 182896641 182896704 -6382850 + L1ME LINE L1 319 380 -5992 2577 51 0 0 chr6 182896704 182896997 -6382557 - AluY SINE Alu -18 293 1 301 263 87 86 chr6 182896997 182897310 -6382244 + L1ME LINE L1 380 699 -5673 683 224 129 44 chr6 182897444 182897839 -6381715 + L1ME LINE L1 799 1249 -5123 1486 181 26 11 chr6 182897839 182898109 -6381445 + AluJo SINE Alu 1 274 -38 683 224 129 44 chr6 182898109 182898155 -6381399 + L1ME LINE L1 1249 1290 -5082 648 205 57 94 chr6 182898191 182898435 -6381119 + L1ME LINE L1 1119 1456 -4926 205 211 0 0 chr6 182899275 182899313 -6380241 - L2 LINE L2 -8 3305 3268 23 0 0 0 chr6 182899630 182899653 -6379901 + AT_rich Low_complexity Low_complexity 1 23 0 2550 44 3 0 chr6 182900021 182900319 -6379235 + AluY SINE Alu 1 299 -12 535 346 126 37 chr6 182900435 182901351 -6378203 - L2 LINE L2 -161 3111 2083 2398 88 13 0 chr6 182901351 182901657 -6377897 + AluY SINE Alu 1 310 -1 535 346 126 37 chr6 182901657 182901809 -6377745 - L2 LINE L2 -1189 2083 1946 332 320 155 51 chr6 182901810 182902126 -6377428 - L3 LINE CR1 -890 687 339 208 339 46 0 chr6 182902361 182902426 -6377128 + MIR SINE MIR 21 88 -174 2271 109 0 7 chr6 182903111 182903414 -6376140 + AluSx SINE Alu 1 301 -11 257 389 0 0 chr6 182903574 182903682 -6375872 + MIR SINE MIR 40 147 -115 227 337 59 10 chr6 182903767 182903868 -6375686 + MIR3 SINE MIR 90 195 -13 217 364 85 44 chr6 182904010 182904326 -6375228 - L2 LINE L2 -432 2882 2554 185 333 124 33 chr6 182905714 182905867 -6373687 - L3 LINE CR1 -14 1563 1397 239 280 67 27 chr6 182905881 182905956 -6373598 + L1ME LINE L1 5517 5594 -527 477 132 0 0 chr6 182905969 182906037 -6373517 + AluS SINE Alu 2 69 -244 216 0 0 0 chr6 182906053 182906077 -6373477 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 372 98 0 0 chr6 182906085 182906136 -6373418 + L1ME LINE L1 5604 5654 -467 23 33 0 0 chr6 182906429 182906459 -6373095 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr6 182906548 182906573 -6372981 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr6 182906584 182906606 -6372948 + (CA)n Simple_repeat Simple_repeat 1 22 0 237 183 67 0 chr6 182906724 182906784 -6372770 + L1ME4a LINE L1 6054 6117 -4 222 37 0 0 chr6 182906863 182906890 -6372664 + (T)n Simple_repeat Simple_repeat 1 27 0 410 305 18 24 chr6 182907744 182907911 -6371643 - MER5B DNA MER1_type -6 172 7 212 147 0 0 chr6 182908797 182908831 -6370723 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2188 138 0 0 chr6 182908833 182909144 -6370410 - AluSx SINE Alu -1 311 1 517 291 14 14 chr6 182909581 182909729 -6369825 + MIR SINE MIR 6 153 -109 181 349 66 0 chr6 182910746 182910852 -6368702 - L2 LINE L2 -691 2623 2511 879 221 84 20 chr6 182910856 182911105 -6368449 - MLT1C LTR MaLR -3 464 200 580 266 134 17 chr6 182911136 182911493 -6368061 + HAL1 LINE L1 2109 2507 0 193 323 79 61 chr6 182912067 182912112 -6367442 - MIR SINE MIR -6 256 213 2374 119 39 30 chr6 182912112 182912473 -6367081 - THE1B LTR MaLR 0 364 1 193 323 79 61 chr6 182912473 182912591 -6366963 - MIR SINE MIR -49 213 90 2104 114 48 0 chr6 182914289 182914579 -6364975 + AluSx SINE Alu 1 304 -8 450 235 87 0 chr6 182914954 182915069 -6364485 + MER63 DNA MER1_type 1 751 -311 639 269 59 11 chr6 182915101 182915287 -6364267 - MIR SINE MIR -42 220 26 264 175 70 0 chr6 182916056 182916113 -6363441 + MIR SINE MIR 84 144 -118 319 309 106 32 chr6 182916352 182916540 -6363014 - L2 LINE L2 -3 3269 3068 351 273 23 38 chr6 182916688 182916820 -6362734 - MER5A DNA MER1_type -21 168 39 296 270 151 31 chr6 182917474 182917617 -6361937 - MIR3 SINE MIR -52 156 38 30 59 0 0 chr6 182917822 182917873 -6361681 + AT_rich Low_complexity Low_complexity 1 51 0 197 224 30 0 chr6 182918106 182918173 -6361381 + GA-rich Low_complexity Low_complexity 4 72 0 367 313 100 11 chr6 182918803 182919147 -6360407 - L1MD2 LINE L1 -408 5951 5571 2067 108 7 4 chr6 182919265 182919571 -6359983 + AluSc SINE Alu 1 307 0 843 153 103 31 chr6 182919604 182919827 -6359727 - L1MEc LINE L1 -4261 2135 1897 403 245 259 7 chr6 182919844 182919983 -6359571 - MER63A DNA MER1_type -35 175 2 2193 264 52 39 chr6 182919983 182921677 -6357877 - L1MEc LINE L1 -4490 1906 130 1489 186 0 0 chr6 182921677 182921913 -6357641 - MER46A DNA MER2_type 0 236 1 2193 264 52 39 chr6 182921913 182922039 -6357515 - L1MEc LINE L1 -6266 130 7 477 215 85 60 chr6 182923110 182923310 -6356244 - HAL1 LINE L1 -1 2506 2302 2826 266 32 17 chr6 182923315 182924191 -6355363 - HAL1 LINE L1 -586 1921 1033 * 14065 171 27 12 chr6 182924186 182925176 -6354378 - L1MA5A LINE L1 -4 6293 5319 207 0 0 0 chr6 182925176 182925199 -6354355 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 14065 171 27 12 chr6 182925199 182927995 -6351559 - L1MA5A LINE L1 -978 5319 2445 4459 144 19 5 chr6 182927988 182928775 -6350779 - L1 LINE L1 -1094 5052 4255 * 1930 260 167 42 chr6 182928751 182929710 -6349844 - HAL1 LINE L1 -1428 1079 1 * 1741 258 56 17 chr6 182929808 182930288 -6349266 + MLT1H LTR MaLR 51 549 0 394 387 65 21 chr6 182931707 182932043 -6347511 - L2 LINE L2 -39 3233 2883 363 73 0 0 chr6 182932165 182932220 -6347334 + (TATG)n Simple_repeat Simple_repeat 2 56 0 440 305 40 0 chr6 182932220 182932371 -6347183 + L2 LINE L2 3151 3307 -6 569 283 64 26 chr6 182932503 182932892 -6346662 + L1M4 LINE L1 2520 2923 -3223 2170 128 3 0 chr6 182933098 182933396 -6346158 - AluSq SINE Alu -14 299 1 202 318 107 71 chr6 182933564 182934255 -6345299 - L2 LINE L2 -891 2423 1695 2219 118 64 14 chr6 182934255 182934612 -6344942 + THE1C LTR MaLR 1 375 0 202 318 107 71 chr6 182934612 182934754 -6344800 - L2 LINE L2 -1619 1695 1560 2170 130 0 0 chr6 182935446 182935745 -6343809 + AluSc SINE Alu 1 299 -10 345 344 8 30 chr6 182935879 182936010 -6343544 + MIR3 SINE MIR 44 171 -37 470 284 38 44 chr6 182937068 182937304 -6342250 - MIR SINE MIR -26 236 4 226 268 72 41 chr6 182937845 182937942 -6341612 - MLT1K LTR MaLR -117 471 372 1756 180 20 0 chr6 182937973 182938278 -6341276 - AluJo SINE Alu -1 311 1 270 291 98 47 chr6 182938362 182938596 -6340958 - MLT1K LTR MaLR -325 263 18 2026 134 7 0 chr6 182938958 182939249 -6340305 + AluSx SINE Alu 1 293 -19 1888 161 0 3 chr6 182939636 182939922 -6339632 + AluJb SINE Alu 5 289 -23 27 73 0 0 chr6 182939922 182939977 -6339577 + AT_rich Low_complexity Low_complexity 1 55 0 26 30 0 0 chr6 182940158 182940191 -6339363 + AT_rich Low_complexity Low_complexity 1 33 0 2351 198 44 50 chr6 182941628 182941982 -6337572 - LTR43 LTR ERV1 0 602 252 2213 109 10 10 chr6 182941982 182942294 -6337260 - AluSq SINE Alu -1 312 1 2351 198 44 50 chr6 182942294 182942536 -6337018 - LTR43 LTR ERV1 -350 252 10 2146 89 22 32 chr6 182942928 182943243 -6336311 + AluSx SINE Alu 1 312 0 1955 122 43 4 chr6 182943917 182944195 -6335359 + AluSx SINE Alu 1 289 -23 1978 133 23 16 chr6 182944205 182944513 -6335041 + AluJb SINE Alu 1 310 -2 1125 184 129 15 chr6 182944789 182945061 -6334493 + MER33 DNA MER1_type 22 324 0 2052 113 0 11 chr6 182945495 182945779 -6333775 + AluSx SINE Alu 1 281 -31 333 0 0 0 chr6 182945782 182945819 -6333735 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 802 178 113 152 chr6 182945868 182946223 -6333331 - MLT1B LTR MaLR -46 344 4 327 166 7 0 chr6 182946343 182946410 -6333144 - MLT2A2 LTR ERVL 0 453 397 2420 88 48 23 chr6 182949765 182950118 -6329436 - THE1B LTR MaLR 0 364 3 261 256 18 110 chr6 182950329 182950493 -6329061 - MIR SINE MIR -50 212 64 2350 107 0 0 chr6 182950978 182951278 -6328276 - AluSq SINE Alu -13 300 1 235 329 186 12 chr6 182953230 182953391 -6326163 - MIR3 SINE MIR -9 199 11 350 214 23 15 chr6 182954048 182954179 -6325375 + CT-rich Low_complexity Low_complexity 3 134 0 180 200 0 40 chr6 182954265 182954315 -6325239 - L2 LINE L2 -4 3309 3262 352 269 9 0 chr6 182954756 182954864 -6324690 - MIR SINE MIR 0 262 154 1408 214 46 29 chr6 182954874 182955225 -6324329 + MLT1B LTR MaLR 1 357 -33 1065 193 39 77 chr6 182955222 182955507 -6324047 - MLT1A2 LTR MaLR -100 274 1 * 2094 54 0 8 chr6 182955532 182955792 -6323762 - L1PA6 LINE L1 -1 6153 5896 1744 271 52 19 chr6 182955867 182956351 -6323203 + L1MA10 LINE L1 2 501 -5640 14500 214 59 14 chr6 182956454 182957474 -6322080 + L1MA10 LINE L1 676 1649 -4727 2423 179 5 25 chr6 182957474 182957915 -6321639 - Tigger2a DNA MER2_type 0 434 3 14500 214 59 14 chr6 182957915 182957998 -6321556 + L1MA10 LINE L1 1649 1727 -4649 1443 213 27 30 chr6 182957998 182958294 -6321260 + AluJo SINE Alu 1 295 -17 14500 214 59 14 chr6 182958294 182960992 -6318562 + L1MA10 LINE L1 1727 4400 -1976 311 0 26 0 chr6 182960992 182961031 -6318523 + (CA)n Simple_repeat Simple_repeat 1 40 0 14500 214 59 14 chr6 182961031 182962344 -6317210 + L1MA10 LINE L1 4400 5652 -724 421 134 0 0 chr6 182962364 182962431 -6317123 - L1 LINE L1 -1291 4855 4789 2059 76 0 0 chr6 182962460 182962711 -6316843 + AluSp SINE Alu 58 308 -5 3354 182 25 52 chr6 182962714 182963488 -6316066 + L1MA10 LINE L1 5644 6396 -2 1847 102 0 0 chr6 182964848 182965094 -6314460 - AluSx SINE Alu -6 306 61 243 296 14 13 chr6 182966067 182966156 -6313398 + GA-rich Low_complexity Low_complexity 4 149 0 254 250 163 0 chr6 182967731 182967811 -6311743 + MER81 DNA DNA 22 114 0 1780 176 27 3 chr6 182968139 182968440 -6311114 - 7SLRNA srpRNA srpRNA -12 308 1 264 240 42 73 chr6 182969525 182969621 -6309933 + MER5A DNA MER1_type 13 105 -84 198 71 0 0 chr6 182971826 182971854 -6307700 + (T)n Simple_repeat Simple_repeat 1 28 0 2435 92 3 0 chr6 182972523 182972828 -6306726 + AluSx SINE Alu 1 306 -6 294 250 49 0 chr6 182973136 182973231 -6306323 - MIR SINE MIR -56 152 53 3160 173 55 7 chr6 182973314 182973932 -6305622 - L1MB1 LINE L1 -87 6081 5434 1700 175 23 10 chr6 182975529 182975837 -6303717 - AluJo SINE Alu 0 312 1 1807 204 72 41 chr6 182975852 182976337 -6303217 + MLT1D LTR MaLR 6 505 0 271 265 46 80 chr6 182976366 182976517 -6303037 - MIR SINE MIR -13 249 104 480 270 193 46 chr6 182977252 182977600 -6301954 + MLT1J2 LTR MaLR 48 450 0 193 200 40 93 chr6 182978367 182978442 -6301112 + MIR3 SINE MIR 7 77 -131 336 241 13 0 chr6 182978689 182978768 -6300786 - MER116 DNA Mariner 0 80 1 461 343 15 20 chr6 182981119 182981320 -6298234 + MIR SINE MIR 63 262 0 481 238 198 43 chr6 182982201 182982675 -6296879 - L2 LINE L2 0 3313 2746 203 306 0 0 chr6 182983107 182983156 -6296398 + MIR SINE MIR 97 145 -63 893 244 28 0 chr6 182983424 182983637 -6295917 + MER20 DNA MER1_type 1 219 0 2348 73 47 3 chr6 182983903 182984203 -6295351 + AluSp SINE Alu 1 313 0 1753 169 43 43 chr6 182984937 182985309 -6294245 - MLT1A2 LTR MaLR -2 372 1 258 174 13 33 chr6 182985490 182985572 -6293982 + MIR SINE MIR 104 181 -65 327 357 7 7 chr6 182986379 182986519 -6293035 + MIR SINE MIR 26 165 -97 246 306 198 29 chr6 182988846 182989431 -6290123 - L2 LINE L2 -337 2977 2294 258 32 0 0 chr6 182989434 182989465 -6290089 + (CA)n Simple_repeat Simple_repeat 2 32 0 2043 143 0 16 chr6 182989526 182989841 -6289713 - AluSq SINE Alu -3 310 1 538 298 59 21 chr6 182989985 182990270 -6289284 + L1ME4a LINE L1 5411 5717 -541 235 290 73 60 chr6 182990324 182990572 -6288982 + L1ME4a LINE L1 5840 6090 -31 301 333 38 11 chr6 182990680 182990863 -6288691 + L1ME4a LINE L1 5491 5678 -443 483 301 90 28 chr6 182990969 182991368 -6288186 + L1ME4a LINE L1 5692 6115 -6 2586 77 47 3 chr6 182991397 182991736 -6287818 + THE1A LTR MaLR 1 354 -1 729 284 10 5 chr6 182992492 182992700 -6286854 - MIR SINE MIR -26 236 28 353 259 9 19 chr6 182994790 182994898 -6284656 + GA-rich Low_complexity Low_complexity 4 110 0 2058 139 7 0 chr6 182994981 182995290 -6284264 - AluSx SINE Alu -1 311 1 2011 146 138 0 chr6 182995730 182996106 -6283448 - MSTA LTR MaLR 0 428 1 214 250 0 0 chr6 182996603 182996659 -6282895 + A-rich Low_complexity Low_complexity 1 56 0 1072 113 16 32 chr6 182996687 182996873 -6282681 - MLT2B2 LTR ERVL 0 515 333 1142 153 37 0 chr6 182996877 182997066 -6282488 - MLT2B2 LTR ERVL -319 196 1 342 0 0 0 chr6 182997860 182997898 -6281656 + (TG)n Simple_repeat Simple_repeat 2 39 0 237 65 0 0 chr6 182998863 182998894 -6280660 + (CA)n Simple_repeat Simple_repeat 2 32 0 267 259 89 7 chr6 183000772 183000907 -6278647 - L1ME4a LINE L1 -20 6101 5956 1771 169 77 6 chr6 183001801 183002139 -6277415 + MLT2D LTR ERVL 4 365 -49 247 178 39 23 chr6 183002236 183002365 -6277189 + (TA)n Simple_repeat Simple_repeat 1 131 0 346 68 0 0 chr6 183002421 183002465 -6277089 + MLT2D LTR ERVL 369 412 -2 195 42 0 0 chr6 183004866 183004890 -6274664 + (T)n Simple_repeat Simple_repeat 1 24 0 204 102 0 61 chr6 183005036 183005085 -6274469 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 571 213 14 26 chr6 183005201 183005367 -6274187 - MER110A LTR ERV1 0 468 333 2129 119 0 0 chr6 183005788 183006074 -6273480 + AluSx SINE Alu 21 306 -6 284 347 35 6 chr6 183006723 183006893 -6272661 - L2 LINE L2 -923 2391 2217 1733 193 3 7 chr6 183006955 183007260 -6272294 + AluJb SINE Alu 3 306 -6 1246 81 17 6 chr6 183008012 183008184 -6271370 - L1P4 LINE L1 -374 5794 5621 4231 89 10 20 chr6 183008550 183009145 -6270409 - L1PA10 LINE L1 -1 6167 5579 2287 94 10 0 chr6 183012119 183012407 -6267147 + AluSc SINE Alu 1 291 -18 205 197 26 0 chr6 183012426 183012502 -6267052 + (TA)n Simple_repeat Simple_repeat 1 78 0 1753 184 33 0 chr6 183012628 183012927 -6266627 - AluJb SINE Alu -3 309 1 2651 43 0 0 chr6 183014633 183014937 -6264617 - AluY SINE Alu -7 304 1 1836 162 3 19 chr6 183015213 183015527 -6264027 + AluJb SINE Alu 1 309 -3 219 69 0 0 chr6 183017739 183017768 -6261786 + (T)n Simple_repeat Simple_repeat 1 29 0 193 222 20 0 chr6 183017793 183017892 -6261662 + (TG)n Simple_repeat Simple_repeat 1 101 0 261 351 53 0 chr6 183018441 183018555 -6260999 + MIR SINE MIR 126 245 -17 1994 60 0 0 chr6 183020200 183020435 -6259119 - AluY SINE Alu -7 304 70 486 278 105 0 chr6 183020630 183020792 -6258762 - MIR SINE MIR -29 233 55 358 271 14 56 chr6 183021267 183021411 -6258143 - L1MA10 LINE L1 -4 6330 6193 418 286 9 0 chr6 183021412 183021524 -6258030 + MER45 DNA AcHobo 4 116 -1465 2302 153 23 16 chr6 183021618 183021884 -6257670 - L1MB3 LINE L1 -2 6181 5909 1616 194 10 65 chr6 183021884 183022103 -6257451 + MLT1A1 LTR MaLR 1 192 -173 1841 138 30 30 chr6 183022103 183022400 -6257154 + AluJo SINE Alu 15 311 -1 1616 194 10 65 chr6 183022400 183022566 -6256988 + MLT1A1 LTR MaLR 192 365 0 2302 153 23 16 chr6 183022566 183022729 -6256825 - L1MB3 LINE L1 -274 5909 5749 2185 203 83 71 chr6 183022769 183022924 -6256630 - L1ME1 LINE L1 -165 6070 5918 2103 123 7 7 chr6 183022924 183023225 -6256329 + AluSq SINE Alu 11 311 -2 2185 203 83 71 chr6 183023225 183023446 -6256108 - L1ME1 LINE L1 -317 5918 5701 2177 91 0 46 chr6 183023446 183023753 -6255801 - AluY SINE Alu -18 293 1 2185 203 83 71 chr6 183023753 183024208 -6255346 - L1ME1 LINE L1 -534 5701 5236 805 218 11 17 chr6 183024206 183024380 -6255174 - L1ME1 LINE L1 -6186 210 38 * 21 0 0 0 chr6 183024416 183024437 -6255117 + AT_rich Low_complexity Low_complexity 1 21 0 471 292 73 10 chr6 183024788 183024980 -6254574 + Charlie8 DNA MER1_type 1 204 -2213 7818 23 2 0 chr6 183025496 183027100 -6252454 + L1PA4 LINE L1 4551 6154 -1 1511 221 34 49 chr6 183027704 183028174 -6251380 - MLT1C LTR MaLR -4 463 1 738 277 110 38 chr6 183028231 183028731 -6250823 - L1MC4a LINE L1 -309 5812 5315 763 301 106 33 chr6 183029055 183030151 -6249403 - L1MC4a LINE L1 -1127 5019 3808 21 57 0 0 chr6 183032233 183032268 -6247286 + AT_rich Low_complexity Low_complexity 1 35 0 358 290 60 38 chr6 183032319 183032636 -6246918 - L1ME4a LINE L1 -69 6052 5729 192 356 44 0 chr6 183032712 183032802 -6246752 - L2 LINE L2 -56 3216 3123 2092 125 14 7 chr6 183032820 183033117 -6246437 + AluSx SINE Alu 1 299 -13 1042 236 166 3 chr6 183033485 183033799 -6245755 + MER34 LTR ERV1 25 389 -153 1889 138 10 23 chr6 183033799 183034103 -6245451 - AluSx SINE Alu -8 304 5 408 245 19 28 chr6 183034103 183034209 -6245345 + MER34 LTR ERV1 438 542 0 21 0 0 0 chr6 183034303 183034324 -6245230 + AT_rich Low_complexity Low_complexity 1 21 0 2116 116 33 7 chr6 183034372 183034673 -6244881 - AluSx SINE Alu -3 309 1 585 256 60 96 chr6 183035011 183035343 -6244211 - L1ME3A LINE L1 -59 6111 5792 481 276 119 41 chr6 183035348 183035591 -6243963 - L1ME3A LINE L1 -436 5685 5424 446 295 8 64 chr6 183035760 183035994 -6243560 - MIR SINE MIR -8 254 34 885 186 57 0 chr6 183038934 183039127 -6240427 - L1MA7 LINE L1 -6 6285 6082 243 221 29 29 chr6 183040900 183040968 -6238586 + MIR SINE MIR 49 116 -146 312 242 51 58 chr6 183041219 183041385 -6238169 + MLT1H LTR MaLR 425 549 0 183 303 15 0 chr6 183041393 183041459 -6238095 + MIR SINE MIR 117 183 -79 2235 104 7 0 chr6 183041564 183041861 -6237693 + AluSq SINE Alu 1 299 -14 1721 147 4 29 chr6 183043640 183043919 -6235635 + AluJb SINE Alu 15 286 -26 559 190 0 0 chr6 183044023 183044123 -6235431 + MER53 DNA DNA 1 100 -89 507 176 168 0 chr6 183045831 183045956 -6233598 - MER103 DNA DNA -4 162 17 2825 188 38 21 chr6 183047433 183048711 -6230843 - L1MA4A LINE L1 -342 5961 4617 341 324 70 46 chr6 183049620 183049861 -6229693 + L1ME3 LINE L1 651 897 -5308 566 279 15 42 chr6 183049996 183050258 -6229296 + L1ME3 LINE L1 1041 1295 -4910 308 330 86 5 chr6 183050398 183050619 -6228935 + L1ME3 LINE L1 1515 1753 -4643 538 291 170 23 chr6 183050807 183051072 -6228482 + L2 LINE L2 2344 2647 -667 285 271 99 95 chr6 183051094 183051356 -6228198 + L2 LINE L2 3050 3312 -1 285 231 154 105 chr6 183051435 183052479 -6227075 + L1ME3 LINE L1 4244 5338 -877 470 341 68 8 chr6 183052849 183053245 -6226309 + L1ME3 LINE L1 5479 5898 -333 1200 134 0 0 chr6 183054035 183054206 -6225348 + AluSg/x SINE Alu 129 299 -11 3898 197 82 25 chr6 183056750 183058011 -6221543 - L1MD1 LINE L1 -6 6236 4915 2099 260 31 36 chr6 183058010 183058309 -6221245 + L1M4 LINE L1 3374 3673 -2473 * 1578 121 86 35 chr6 183058309 183058624 -6220930 + L1MA10 LINE L1 6004 6334 0 2099 260 31 36 chr6 183058624 183059105 -6220449 + L1M4 LINE L1 3673 4150 -1996 348 243 47 0 chr6 183059114 183059221 -6220333 + L1M4 LINE L1 4760 4871 -1275 2206 139 53 29 chr6 183059225 183059745 -6219809 - MLT2A2 LTR ERVL 0 554 1 1082 297 121 8 chr6 183059745 183060520 -6219034 - L1MD1 LINE L1 -2489 3657 2795 1076 269 43 43 chr6 183060520 183060769 -6218785 + L1MCa LINE L1 1 107 -5938 2089 71 8 0 chr6 183060769 183061023 -6218531 + AluSx SINE Alu 39 294 -18 1076 269 43 43 chr6 183061023 183061380 -6218174 + L1MCa LINE L1 107 463 -5582 202 290 65 43 chr6 183061834 183061927 -6217627 + L2 LINE L2 3199 3293 -20 796 326 23 49 chr6 183062467 183062817 -6216737 - L3 LINE CR1 -39 1538 1198 546 200 9 0 chr6 183063891 183064001 -6215553 - L1MD3 LINE L1 -438 7557 7447 360 247 12 0 chr6 183064029 183064114 -6215440 - MLT1F1 LTR MaLR -448 119 34 530 186 70 29 chr6 183064114 183064286 -6215268 - L1MD3 LINE L1 -890 7105 6927 299 274 16 8 chr6 183064332 183064456 -6215098 - L1M4 LINE L1 -890 5256 5132 296 234 24 40 chr6 183064454 183064578 -6214976 + L1M4 LINE L1 3916 4037 -2109 * 2115 129 51 28 chr6 183064578 183064934 -6214620 - THE1B LTR MaLR 0 364 1 4627 96 21 0 chr6 183064934 183065592 -6213962 - THE1B-int LTR MaLR 0 1580 909 297 264 98 11 chr6 183065589 183065865 -6213689 + L1M4 LINE L1 4229 4528 -1618 * 1573 133 13 57 chr6 183065875 183066192 -6213362 + L1MA9 LINE L1 6010 6312 0 644 275 97 47 chr6 183066350 183066725 -6212829 + L1M4 LINE L1 4579 4986 -1160 1635 184 7 27 chr6 183066725 183067018 -6212536 + AluJo SINE Alu 1 287 -25 644 275 97 47 chr6 183067018 183067137 -6212417 + L1M4 LINE L1 4986 5098 -1048 2181 131 126 5 chr6 183067566 183067948 -6211606 + MSTA LTR MaLR 1 428 0 298 247 116 27 chr6 183068625 183068771 -6210783 - L1ME4a LINE L1 -7 6114 5956 27 29 0 0 chr6 183068787 183068821 -6210733 + AT_rich Low_complexity Low_complexity 1 34 0 1125 173 0 0 chr6 183068953 183069121 -6210433 + AluJo SINE Alu 120 287 -25 1344 113 26 35 chr6 183069133 183069362 -6210192 - THE1B LTR MaLR -137 227 1 1047 149 7 0 chr6 183071226 183071380 -6208174 + AluSg/x SINE Alu 136 290 -20 4734 219 89 42 chr6 183072589 183073353 -6206201 + MER45R DNA AcHobo 2 729 -852 2397 69 0 3 chr6 183073353 183073656 -6205898 - AluY SINE Alu -1 310 9 4734 219 89 42 chr6 183073656 183074399 -6205155 + MER45R DNA AcHobo 729 1580 -1 1416 116 25 0 chr6 183074414 183074612 -6204942 - AluSg/x SINE Alu -21 289 87 1380 193 7 52 chr6 183077424 183077730 -6201824 + AluJo SINE Alu 6 297 -15 462 79 0 0 chr6 183077738 183077801 -6201753 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 1737 177 74 20 chr6 183078498 183078559 -6200995 - MSTA LTR MaLR 0 428 372 13413 36 5 0 chr6 183078559 183080953 -6198601 + L1PA4 LINE L1 3753 6155 0 1737 177 74 20 chr6 183080953 183081297 -6198257 - MSTA LTR MaLR -56 372 1 340 278 130 0 chr6 183081849 183081957 -6197597 + MER58A DNA MER1_type 2 123 0 205 377 85 0 chr6 183082008 183082114 -6197440 + L2 LINE L2 3128 3242 -30 270 0 0 0 chr6 183083775 183083805 -6195749 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 1067 160 23 151 chr6 183083934 183084284 -6195270 - MLT1A1 LTR MaLR -57 308 4 2344 82 23 7 chr6 183084603 183084909 -6194645 + AluY SINE Alu 1 311 0 242 320 0 13 chr6 183086389 183086467 -6193087 + (CA)n Simple_repeat Simple_repeat 1 77 0 251 336 60 45 chr6 183086869 183087003 -6192551 - L2 LINE L2 -19 3253 3118 209 374 121 0 chr6 183087430 183087596 -6191958 + MIR SINE MIR 71 256 -6 207 308 0 15 chr6 183088782 183088847 -6190707 - L2 LINE L2 0 3313 3250 431 260 149 7 chr6 183089027 183089181 -6190373 + MIR SINE MIR 87 262 0 200 167 0 0 chr6 183090436 183090466 -6189088 + polypyrimidine Low_complexity Low_complexity 1 30 0 510 272 45 34 chr6 183090535 183090714 -6188840 + MIR SINE MIR 53 232 -30 498 174 0 0 chr6 183091106 183091215 -6188339 + (TG)n Simple_repeat Simple_repeat 1 109 0 732 200 0 0 chr6 183091243 183091423 -6188131 + (TG)n Simple_repeat Simple_repeat 1 180 0 194 323 11 32 chr6 183091731 183091824 -6187730 + L2 LINE L2 2917 3007 -265 262 274 41 14 chr6 183091891 183091964 -6187590 + MER91B DNA MER1_type 3 77 -113 670 314 120 19 chr6 183094063 183094688 -6184866 - L2 LINE L2 0 3313 2632 265 286 67 58 chr6 183094839 183095181 -6184373 + MLT1J LTR MaLR 163 507 -4 241 319 63 53 chr6 183095181 183095388 -6184166 - L2 LINE L2 -682 2632 2424 1882 331 52 46 chr6 183095430 183096552 -6183002 - L2 LINE L2 -1849 1465 338 412 341 0 0 chr6 183096650 183096957 -6182597 + (CA)n Simple_repeat Simple_repeat 1 307 0 189 282 269 13 chr6 183097090 183097168 -6182386 + L2 LINE L2 3165 3262 -10 217 86 0 29 chr6 183099546 183099581 -6179973 + MIR3 SINE MIR 158 191 -17 21 71 0 0 chr6 183099644 183099686 -6179868 + AT_rich Low_complexity Low_complexity 1 42 0 2152 156 68 34 chr6 183099781 183100223 -6179331 + LTR2B LTR ERV1 34 490 0 461 226 119 25 chr6 183100223 183100382 -6179172 + MIR SINE MIR 67 240 -22 679 259 75 4 chr6 183101049 183101277 -6178277 - MIR SINE MIR -15 247 4 2134 143 0 0 chr6 183103432 183103739 -6175815 + AluSq SINE Alu 1 307 -6 284 252 50 65 chr6 183104254 183104393 -6175161 + MIR SINE MIR 56 192 -70 1925 147 9 18 chr6 183106181 183106507 -6173047 - MER39B LTR ERV1 -76 577 255 3514 159 32 10 chr6 183106516 183107132 -6172422 - L1PB4 LINE L1 -3 6153 5524 240 233 67 0 chr6 183108228 183108288 -6171266 + polypyrimidine Low_complexity Low_complexity 4 67 0 265 61 20 41 chr6 183108288 183108337 -6171217 + (CCCCCT)n Simple_repeat Simple_repeat 5 52 0 279 305 78 21 chr6 183109043 183109184 -6170370 - MIR SINE MIR -22 240 92 301 43 43 0 chr6 183111157 183111204 -6168350 + (TG)n Simple_repeat Simple_repeat 2 50 0 28 0 0 0 chr6 183113524 183113552 -6166002 + AT_rich Low_complexity Low_complexity 1 28 0 339 218 0 0 chr6 183113572 183113673 -6165881 + (TG)n Simple_repeat Simple_repeat 2 102 0 369 330 23 23 chr6 183116023 183116241 -6163313 - MLT1G1-int LTR MaLR -822 549 332 426 206 29 59 chr6 183116364 183116466 -6163088 - FRAM SINE Alu -7 169 71 674 311 182 10 chr6 183116477 183116972 -6162582 - MLT1G1 LTR MaLR 0 595 16 319 172 16 0 chr6 183116977 183117041 -6162513 + MLT1C-int LTR MaLR 1298 1362 -9 2509 177 17 11 chr6 183117050 183117514 -6162040 + MLT1C LTR MaLR 1 467 0 417 81 0 0 chr6 183117739 183117801 -6161753 + (TG)n Simple_repeat Simple_repeat 1 62 0 197 327 167 0 chr6 183118688 183118838 -6160716 + L2 LINE L2 2067 2241 -1073 24 0 0 0 chr6 183119864 183119888 -6159666 + AT_rich Low_complexity Low_complexity 1 24 0 199 349 81 47 chr6 183121078 183121313 -6158241 - L3 LINE CR1 0 1577 1335 673 244 22 0 chr6 183122221 183122401 -6157153 + MER5A DNA MER1_type 6 189 0 210 174 0 0 chr6 183122964 183123010 -6156544 + GA-rich Low_complexity Low_complexity 3 48 0 2455 150 28 0 chr6 183123137 183123491 -6156063 - THE1B LTR MaLR 0 364 1 12582 95 1 4 chr6 183123491 183125075 -6154479 - THE1B-int LTR MaLR 0 1580 1 2358 148 34 14 chr6 183125075 183125432 -6154122 - THE1B LTR MaLR 0 364 1 295 320 119 51 chr6 183125485 183126013 -6153541 - L1MC/D LINE L1 -517 5604 5348 25 51 0 0 chr6 183127069 183127108 -6152446 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr6 183127261 183127283 -6152271 + AT_rich Low_complexity Low_complexity 1 22 0 2639 55 0 0 chr6 183127346 183127655 -6151899 - AluY SINE Alu -2 309 1 254 272 63 47 chr6 183127749 183127940 -6151614 - L1MC/D LINE L1 -2573 3573 3380 330 276 36 94 chr6 183128901 183129231 -6150323 - HAL1b LINE L1 -864 484 174 279 0 0 0 chr6 183129561 183129592 -6149962 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1645 150 48 34 chr6 183129628 183129921 -6149633 - AluJo SINE Alu -15 297 1 1291 114 235 31 chr6 183131848 183132103 -6147451 + AluSg1 SINE Alu 1 307 -2 2328 100 0 10 chr6 183132364 183132674 -6146880 + AluSx SINE Alu 1 307 -5 2012 180 112 0 chr6 183134469 183134852 -6144702 + MSTB LTR MaLR 1 426 0 1774 167 7 13 chr6 183136660 183136959 -6142595 - AluJb SINE Alu -14 298 2 231 204 177 18 chr6 183137289 183137402 -6142152 + L1ME4a LINE L1 5989 6119 -2 269 258 0 34 chr6 183138741 183138830 -6140724 + HsTC2 DNA Tc2 16 101 -1797 351 354 16 16 chr6 183139364 183139491 -6140063 - L2 LINE L2 -8 3264 3138 180 0 0 0 chr6 183139694 183139714 -6139840 + (A)n Simple_repeat Simple_repeat 1 20 0 2214 105 7 13 chr6 183140708 183141014 -6138540 - AluSx SINE Alu -8 304 1 1009 38 49 10 chr6 183142256 183142460 -6137094 + (TAGA)n Simple_repeat Simple_repeat 1 212 0 2403 181 5 37 chr6 183142503 183142934 -6136620 + MER47B DNA MER2_type 1 417 -1 275 290 85 85 chr6 183145672 183145791 -6133763 - L2 LINE L2 -23 3249 3128 3270 139 38 6 chr6 183145791 183146288 -6133266 + LTR64 LTR ERVK 1 513 0 275 290 85 85 chr6 183146288 183146344 -6133210 - L2 LINE L2 -143 3129 3074 183 369 27 0 chr6 183146686 183146797 -6132757 - L2 LINE L2 -650 2664 2551 2145 112 3 3 chr6 183146820 183147114 -6132440 + AluSp SINE Alu 3 296 -17 374 69 207 0 chr6 183147375 183147433 -6132121 - MER4B LTR ERV1 -319 291 222 3648 151 59 2 chr6 183147828 183148404 -6131150 - MER4B LTR ERV1 -1 609 1 1170 126 0 23 chr6 183148928 183149103 -6130451 + AluSc SINE Alu 1 171 -138 1646 94 0 0 chr6 183149103 183149316 -6130238 + AluSc SINE Alu 90 302 -7 180 0 0 0 chr6 183149326 183149346 -6130208 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1476 182 51 20 chr6 183149457 183149799 -6129755 - MLT1A1 LTR MaLR 0 365 9 550 315 163 25 chr6 183152445 183153048 -6126506 - L2 LINE L2 -916 2398 1713 883 242 25 17 chr6 183153470 183153862 -6125692 + L1M4 LINE L1 2909 3417 -2729 180 356 0 0 chr6 183154135 183154194 -6125360 + L2 LINE L2 2260 2318 -996 2496 80 0 0 chr6 183154349 183154660 -6124894 - AluY SINE Alu 0 311 1 1880 35 9 13 chr6 183155312 183155538 -6124016 - AluY SINE Alu -6 305 81 948 279 86 35 chr6 183155781 183156268 -6123286 + LTR33 LTR ERVL 10 521 0 1594 150 44 29 chr6 183156281 183156554 -6123000 + THE1B LTR MaLR 1 277 -87 383 64 0 0 chr6 183156772 183156819 -6122735 - HY4 scRNA scRNA -46 47 1 1234 287 40 38 chr6 183156869 183157368 -6122186 + L1MC4a LINE L1 5255 5754 -2054 2102 171 42 30 chr6 183157422 183157955 -6121599 - MLT2A2 LTR ERVL 0 554 9 281 273 68 11 chr6 183157960 183158048 -6121506 + MLT2F LTR ERVL 44 136 -527 310 326 122 6 chr6 183158123 183158295 -6121259 + MLT2F LTR ERVL 239 430 -233 316 276 141 19 chr6 183158482 183158638 -6120916 + L1MC4a LINE L1 5751 5925 -1883 2269 100 3 0 chr6 183159345 183159645 -6119909 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr6 183159855 183159877 -6119677 + AT_rich Low_complexity Low_complexity 1 22 0 1966 129 20 3 chr6 183160435 183160751 -6118803 + AluSx SINE Alu 2 312 0 388 269 0 0 chr6 183162276 183162369 -6117185 - MER5A DNA MER1_type -84 105 13 251 270 87 40 chr6 183164947 183165073 -6114481 + MIR SINE MIR 64 195 -67 300 341 54 24 chr6 183165363 183165530 -6114024 - MIR3 SINE MIR -21 187 16 216 239 30 0 chr6 183165624 183165691 -6113863 + MIR SINE MIR 65 133 -129 275 338 70 0 chr6 183165770 183165912 -6113642 - MER117 DNA MER1_type -44 153 2 4334 143 11 2 chr6 183165913 183166542 -6113012 - MER41B LTR ERV1 0 635 1 2003 281 87 117 chr6 183167269 183168872 -6110682 + L2 LINE L2 527 2175 -1138 2935 98 5 8 chr6 183168872 183169248 -6110306 + THE1C LTR MaLR 1 375 0 11612 103 29 5 chr6 183169248 183170791 -6108763 + THE1C-int LTR MaLR 1 1580 0 2972 85 3 8 chr6 183170792 183171168 -6108386 + THE1C LTR MaLR 2 375 0 2003 281 87 117 chr6 183171168 183172379 -6107175 + L2 LINE L2 2173 3272 -41 932 278 84 60 chr6 183172379 183172933 -6106621 + MER77 LTR ERV1 54 593 -41 5388 158 17 25 chr6 183173465 183174869 -6104685 - L1PB4 LINE L1 -1 6155 4759 2412 203 4 20 chr6 183174865 183175427 -6104127 + L1PB4 LINE L1 4198 4750 -1396 * 370 381 90 0 chr6 183177058 183177281 -6102273 + MIR SINE MIR 15 257 -5 216 241 111 0 chr6 183177457 183177511 -6102043 - MIR SINE MIR -119 143 84 213 204 0 0 chr6 183179567 183179616 -6099938 + GA-rich Low_complexity Low_complexity 2 50 0 2370 97 3 0 chr6 183179895 183180204 -6099350 - AluSx SINE Alu -2 310 1 952 251 100 39 chr6 183180976 183181466 -6098088 + L1ME3A LINE L1 4781 5300 -846 919 173 13 0 chr6 183181471 183181621 -6097933 + MER2 DNA MER2_type 1 152 -193 529 91 0 71 chr6 183181620 183181719 -6097835 + MER2 DNA MER2_type 119 210 -135 * 2630 120 11 0 chr6 183181724 183182082 -6097472 - THE1B LTR MaLR 0 364 3 246 169 288 0 chr6 183182104 183182163 -6097391 + MER2 DNA MER2_type 270 345 0 1975 258 113 20 chr6 183182164 183182944 -6096610 + L1ME3A LINE L1 5302 6153 -17 2246 97 3 0 chr6 183183253 183183543 -6096011 - AluSg SINE Alu -19 291 1 305 306 90 62 chr6 183183571 183183613 -6095941 - HAL1b LINE L1 -652 696 657 2371 57 3 72 chr6 183183613 183183944 -6095610 - AluY SINE Alu -3 308 1 305 306 90 62 chr6 183183944 183184257 -6095297 - HAL1b LINE L1 -691 657 331 209 282 129 12 chr6 183184923 183185008 -6094546 + MIR SINE MIR 118 212 -50 201 240 67 0 chr6 183186978 183187053 -6092501 - MIR SINE MIR -36 226 147 338 319 108 6 chr6 183187720 183187877 -6091677 + MIR SINE MIR 72 244 -18 2484 88 3 0 chr6 183188261 183188568 -6090986 - AluSx SINE Alu -4 308 1 703 272 112 17 chr6 183189012 183189244 -6090310 + MIR SINE MIR 9 262 0 510 267 64 46 chr6 183189570 183189799 -6089755 - L1M4 LINE L1 -1562 4584 4348 234 91 0 0 chr6 183189799 183189832 -6089722 + (CA)n Simple_repeat Simple_repeat 2 34 0 510 267 64 46 chr6 183189832 183189883 -6089671 - L1M4 LINE L1 -1798 4348 4299 29 28 0 0 chr6 183190428 183190464 -6089090 + AT_rich Low_complexity Low_complexity 1 36 0 2008 154 3 0 chr6 183190464 183190775 -6088779 - AluSx SINE Alu 0 312 1 1410 191 43 20 chr6 183191517 183191806 -6087748 - MER33 DNA MER1_type -2262 323 24 1402 167 4 25 chr6 183191806 183192046 -6087508 - MER46A DNA MER2_type 0 236 2 1410 191 43 20 chr6 183192046 183192080 -6087474 - MER33 DNA MER1_type -2561 24 1 2860 7 0 0 chr6 183192491 183192797 -6086757 - AluYa5 SINE Alu -5 306 1 2153 112 0 0 chr6 183194468 183194762 -6084792 + AluSc SINE Alu 1 294 -15 210 231 187 60 chr6 183196115 183196249 -6083305 - MIR3 SINE MIR -21 187 37 3350 209 123 48 chr6 183196422 183197387 -6082167 - MER45B DNA AcHobo 0 1040 3 561 25 210 12 chr6 183197953 183197993 -6081561 - MLT2A1 LTR ERVL 0 444 413 504 68 0 0 chr6 183197993 183198066 -6081488 + (TA)n Simple_repeat Simple_repeat 2 74 0 561 25 210 12 chr6 183198066 183198106 -6081448 - MLT2A1 LTR ERVL -31 413 348 * 1577 52 0 0 chr6 183198104 183198297 -6081257 - MLT2A1 LTR ERVL -251 193 1 2701 236 83 10 chr6 183200660 183201335 -6078219 + MER45B DNA AcHobo 25 748 -292 1213 195 68 22 chr6 183201551 183201587 -6077967 + MER45B DNA AcHobo 703 736 -845 1759 205 8 22 chr6 183201587 183201957 -6077597 + MLT1A1 LTR MaLR 1 365 0 1213 195 68 22 chr6 183201957 183202243 -6077311 + MER45B DNA AcHobo 736 1040 0 4991 162 23 6 chr6 183202336 183203278 -6076276 + L1MA4 LINE L1 3742 4699 -1447 428 204 9 65 chr6 183203347 183203455 -6076099 + MLT1A1 LTR MaLR 3 104 -261 914 192 31 36 chr6 183203471 183203664 -6075890 + AluJo SINE Alu 90 281 -31 3054 136 110 24 chr6 183203664 183204253 -6075301 + L1MA4 LINE L1 5660 6299 -1 484 270 193 26 chr6 183205243 183205415 -6074139 - L2 LINE L2 -3 3310 3168 1551 189 0 54 chr6 183205415 183205732 -6073822 + AluJb SINE Alu 11 310 -2 484 270 193 26 chr6 183205732 183205974 -6073580 - L2 LINE L2 -145 3168 2827 890 130 13 13 chr6 183206159 183206313 -6073241 + L1MB4 LINE L1 6027 6180 0 1254 217 80 39 chr6 183206404 183206599 -6072955 - MLT1B LTR MaLR -2 388 202 2380 64 3 61 chr6 183206599 183206926 -6072628 - AluY SINE Alu -3 308 1 1254 217 80 39 chr6 183206926 183207094 -6072460 - MLT1B LTR MaLR -188 202 10 246 323 71 0 chr6 183207211 183207366 -6072188 + MIR SINE MIR 62 227 -35 2185 130 42 33 chr6 183207522 183207883 -6071671 + THE1B LTR MaLR 1 364 0 219 69 0 0 chr6 183208820 183208849 -6070705 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 682 309 196 12 chr6 183209408 183210071 -6069483 - L3 LINE CR1 -156 1421 637 274 252 50 50 chr6 183210325 183210444 -6069110 + MIR SINE MIR 31 149 -113 194 319 29 0 chr6 183210796 183210865 -6068689 + L2 LINE L2 3201 3271 -1 225 345 55 0 chr6 183211432 183211577 -6067977 - MIR SINE MIR -57 205 53 1759 170 47 92 chr6 183213402 183213850 -6065704 + L1MA10 LINE L1 5896 6323 -11 1375 160 8 13 chr6 183214383 183214620 -6064934 + MER46A DNA MER2_type 1 236 0 443 271 189 22 chr6 183214728 183215045 -6064509 + L2 LINE L2 2944 3313 0 506 200 7 80 chr6 183215087 183215237 -6064317 - FAM SINE Alu 0 49 1 885 160 41 41 chr6 183215514 183215708 -6063846 + MLT1B LTR MaLR 195 388 -2 240 278 167 8 chr6 183215712 183215838 -6063716 - MIR SINE MIR -97 165 20 2361 96 27 33 chr6 183216320 183216686 -6062868 - THE1B LTR MaLR 0 364 1 2566 82 33 14 chr6 183216950 183217318 -6062236 - THE1C LTR MaLR 0 375 1 378 232 18 0 chr6 183217597 183217687 -6061867 + MER45 DNA AcHobo 13 105 -848 209 179 161 0 chr6 183217808 183217864 -6061690 + L2 LINE L2 3183 3247 -25 185 347 48 0 chr6 183218892 183219016 -6060538 + MIR SINE MIR 107 236 -26 417 320 156 0 chr6 183222102 183222327 -6057227 - MIR SINE MIR 0 262 3 257 159 32 63 chr6 183224964 183225027 -6054527 - MLT1J1 LTR MaLR -3 443 383 241 275 82 41 chr6 183225116 183225287 -6054267 - MLT1J1 LTR MaLR -210 236 59 668 318 62 4 chr6 183225443 183225701 -6053853 - L3 LINE CR1 -128 1449 1177 31 44 0 0 chr6 183226192 183226237 -6053317 + AT_rich Low_complexity Low_complexity 1 45 0 43 35 0 0 chr6 183226320 183226377 -6053177 + AT_rich Low_complexity Low_complexity 1 57 0 192 125 0 0 chr6 183227290 183227322 -6052232 + (GA)n Simple_repeat Simple_repeat 2 33 0 266 283 106 60 chr6 183227444 183227727 -6051827 - L2 LINE L2 0 3272 2977 266 328 0 17 chr6 183228049 183228229 -6051325 + GA-rich Low_complexity Low_complexity 3 179 0 259 217 0 116 chr6 183228324 183228584 -6050970 + G-rich Low_complexity Low_complexity 1 229 0 440 265 90 0 chr6 183228937 183229103 -6050451 - L1MC5 LINE L1 -296 7665 7485 311 193 81 50 chr6 183229103 183229264 -6050290 - L2 LINE L2 -568 2746 2581 354 280 113 13 chr6 183231168 183231318 -6048236 - MIR SINE MIR -19 243 79 291 284 63 11 chr6 183232426 183232521 -6047033 - L2 LINE L2 0 3272 3173 2482 82 0 0 chr6 183232595 183232901 -6046653 + AluY SINE Alu 1 306 -5 424 170 18 98 chr6 183232924 183233036 -6046518 + MLT1B LTR MaLR 224 326 -64 2542 117 11 16 chr6 183233129 183233506 -6046048 + THE1C LTR MaLR 1 375 0 484 303 130 49 chr6 183233537 183234267 -6045287 + L2 LINE L2 1769 2557 -757 315 0 0 0 chr6 183235807 183235842 -6043712 + (CA)n Simple_repeat Simple_repeat 1 35 0 197 59 59 0 chr6 183236652 183236686 -6042868 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 489 243 240 20 chr6 183236770 183237066 -6042488 - L1MC4a LINE L1 -1340 6468 6108 274 289 202 0 chr6 183237107 183237335 -6042219 - L1MC4a LINE L1 -1782 6026 5753 2852 148 30 71 chr6 183237344 183237910 -6041644 - MER44D DNA MER2_type -7 598 1 687 253 37 5 chr6 183237911 183238101 -6041453 - L1MC4a LINE L1 -2058 5750 5555 342 107 0 191 chr6 183238101 183238152 -6041402 - MADE1 DNA Mariner 0 80 49 1548 34 0 0 chr6 183238152 183238330 -6041224 + AluY SINE Alu 134 311 0 342 107 0 191 chr6 183238330 183238362 -6041192 - MADE1 DNA Mariner -31 49 13 * 365 104 30 30 chr6 183238342 183238409 -6041145 - MADE1 DNA Mariner -10 70 4 527 220 16 152 chr6 183238428 183238552 -6041002 - L1MC4a LINE L1 -2285 5523 5464 2355 49 3 10 chr6 183238552 183238840 -6040714 - AluY SINE Alu -25 286 1 527 220 16 152 chr6 183238840 183239024 -6040530 - L1MC4a LINE L1 -2344 5464 5257 707 207 59 30 chr6 183239391 183239560 -6039994 - L1PA15 LINE L1 -2 6163 5990 315 254 109 23 chr6 183239739 183239995 -6039559 - L1MC4a LINE L1 -1675 4471 4194 205 186 51 0 chr6 183240140 183240199 -6039355 + (TA)n Simple_repeat Simple_repeat 2 63 0 413 263 155 25 chr6 183240301 183240624 -6038930 - L1MC4a LINE L1 -2187 3959 3595 265 91 0 0 chr6 183240826 183240859 -6038695 + tRNA-Cys-TGC tRNA tRNA 5 37 -38 219 296 0 0 chr6 183241053 183241134 -6038420 + T-rich Low_complexity Low_complexity 1 81 0 26 50 0 0 chr6 183241248 183241288 -6038266 + AT_rich Low_complexity Low_complexity 1 40 0 207 139 0 0 chr6 183241328 183241364 -6038190 + (CA)n Simple_repeat Simple_repeat 1 36 0 1680 196 42 11 chr6 183241371 183241748 -6037806 - MLT2C1 LTR ERVL -8 389 1 201 231 77 26 chr6 183243045 183243123 -6036431 + MIR SINE MIR 137 218 -44 216 0 0 0 chr6 183243456 183243480 -6036074 + (GGA)n Simple_repeat Simple_repeat 2 25 0 205 156 0 0 chr6 183244636 183244668 -6034886 + GA-rich Low_complexity Low_complexity 2 33 0 2075 122 11 0 chr6 183245635 183245921 -6033633 - AluSq SINE Alu -6 307 19 821 89 0 0 chr6 183247112 183247224 -6032330 - AluSp/q SINE Alu -1 312 201 261 0 0 0 chr6 183247243 183247272 -6032282 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 240 292 152 56 chr6 183247283 183247749 -6031805 + MLT1K LTR MaLR 34 544 -44 539 24 169 0 chr6 183248071 183248154 -6031400 - AluSp/q SINE Alu -9 304 208 541 343 85 17 chr6 183248375 183248786 -6030768 + HERV16 LTR ERVL 340 778 -4218 1008 226 80 43 chr6 183249568 183249944 -6029610 + MLT1B LTR MaLR 1 390 0 264 310 73 35 chr6 183250172 183250404 -6029150 + LTR16B LTR ERVL 90 330 -134 226 191 21 0 chr6 183251786 183251833 -6027721 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 201 283 17 0 chr6 183252128 183252188 -6027366 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 326 293 65 0 chr6 183253578 183253701 -6025853 + L2 LINE L2 3183 3313 0 30 0 0 0 chr6 183254243 183254273 -6025281 + AT_rich Low_complexity Low_complexity 1 30 0 3336 245 49 17 chr6 183254296 183255377 -6024177 + L1MD2 LINE L1 3750 4865 -1281 1541 218 30 41 chr6 183255415 183255811 -6023743 + MSTD LTR MaLR 1 503 -2 4573 213 59 23 chr6 183255827 183256720 -6022834 + L1MD2 LINE L1 4882 5848 -511 2109 141 52 19 chr6 183256720 183257083 -6022471 + THE1C LTR MaLR 1 375 0 4573 213 59 23 chr6 183257083 183257597 -6021957 + L1MD2 LINE L1 5848 6342 -17 310 243 47 84 chr6 183257604 183257711 -6021843 + MER5A DNA MER1_type 63 165 -24 1599 269 107 26 chr6 183260855 183261596 -6017958 - L1MC4 LINE L1 -169 7873 7073 21 0 0 0 chr6 183261692 183261713 -6017841 + AT_rich Low_complexity Low_complexity 1 21 0 183 127 109 0 chr6 183261752 183261807 -6017747 + (CATG)n Simple_repeat Simple_repeat 3 63 0 1739 154 26 20 chr6 183263756 183264106 -6015448 - L1MA8 LINE L1 -27 6264 5913 21 0 0 0 chr6 183314190 183314211 -5965343 + AT_rich Low_complexity Low_complexity 1 21 0 1914 139 11 0 chr6 183314275 183314556 -5964998 - AluJb SINE Alu -25 287 4 1032 253 111 10 chr6 183314557 183315073 -5964481 - MER97b DNA MER1_type? -286 608 4 2268 93 3 7 chr6 183316331 183316633 -5962921 - AluY SINE Alu -10 301 1 22 0 0 0 chr6 183317599 183317621 -5961933 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr6 183317651 183317676 -5961878 + AT_rich Low_complexity Low_complexity 1 25 0 310 335 13 6 chr6 183318345 183318503 -5961051 + L1MC/D LINE L1 5671 5829 -1979 282 265 118 108 chr6 183318655 183318934 -5960620 - MLT1J2 LTR MaLR -167 283 2 857 299 65 61 chr6 183321507 183321666 -5957888 - L1MEd LINE L1 -2256 3873 3716 1292 224 28 41 chr6 183321666 183321956 -5957598 + AluJo SINE Alu 3 288 -14 857 299 65 61 chr6 183321956 183322436 -5957118 - L1MEd LINE L1 -2413 3716 3226 1725 193 0 0 chr6 183322436 183322747 -5956807 - AluJo SINE Alu -1 311 1 857 299 65 61 chr6 183322747 183323078 -5956476 - L1MEd LINE L1 -2903 3226 2898 537 164 101 19 chr6 183323077 183323236 -5956318 - L1MC4 LINE L1 -400 7642 7471 * 744 258 22 76 chr6 183323225 183323567 -5955987 - L1MEd LINE L1 -4834 1255 971 366 267 133 81 chr6 183323611 183324008 -5955546 - MLT1H LTR MaLR -38 511 94 566 311 64 39 chr6 183324081 183324564 -5954990 - L1MEd LINE L1 -5168 951 457 1716 180 32 68 chr6 183325021 183325190 -5954364 + MLT1B LTR MaLR 1 174 -216 2255 113 3 0 chr6 183325190 183325499 -5954055 + AluY SINE Alu 1 310 -1 1716 180 32 68 chr6 183325499 183325729 -5953825 + MLT1B LTR MaLR 174 386 -4 2640 182 27 4 chr6 183325737 183326408 -5953146 + MLT1B-int LTR MaLR 1 895 -476 2571 109 31 11 chr6 183326458 183326815 -5952739 + THE1B LTR MaLR 1 364 0 378 311 10 0 chr6 183326819 183326922 -5952632 + MLT-int LTR MaLR 676 779 -956 * 2005 224 65 32 chr6 183326915 183327483 -5952071 + MLT1B-int LTR MaLR 1148 1734 -1 1791 209 50 16 chr6 183327484 183327861 -5951693 + MLT1B LTR MaLR 1 390 0 221 286 118 65 chr6 183327993 183328349 -5951205 + L2 LINE L2 2383 2757 -557 317 232 14 0 chr6 183328742 183328811 -5950743 + L2 LINE L2 3241 3310 -3 457 287 45 73 chr6 183328993 183329282 -5950272 + L2 LINE L2 3033 3313 0 210 254 0 0 chr6 183329916 183329983 -5949571 + (CATA)n Simple_repeat Simple_repeat 2 68 0 1760 151 91 62 chr6 183330086 183330438 -5949116 - THE1B LTR MaLR -2 362 1 2118 126 0 0 chr6 183330494 183330780 -5948774 + AluSc SINE Alu 3 288 -21 1083 247 59 52 chr6 183330926 183331383 -5948171 + MLT1B LTR MaLR 8 467 0 3659 80 9 0 chr6 183332343 183332792 -5946762 + MLT2A2 LTR ERVL 1 453 0 204 384 56 8 chr6 183333091 183333216 -5946338 + MIR SINE MIR 20 150 -112 364 343 150 0 chr6 183333423 183333703 -5945851 + L2 LINE L2 355 676 -2638 940 292 29 55 chr6 183333969 183334276 -5945278 + L2 LINE L2 2046 2339 -975 2115 165 27 14 chr6 183334276 183334646 -5944908 - THE1C LTR MaLR 0 375 1 940 292 29 55 chr6 183334646 183334793 -5944761 + L2 LINE L2 2339 2488 -826 514 252 19 0 chr6 183334793 183334900 -5944654 - MER81 DNA DNA 0 114 6 296 320 68 14 chr6 183334938 183335085 -5944469 + L2 LINE L2 2525 2679 -635 1002 302 43 36 chr6 183335086 183335506 -5944048 + L2 LINE L2 2874 3296 -17 264 149 0 0 chr6 183336897 183336944 -5942610 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 181 328 66 0 chr6 183337158 183337219 -5942335 - L2 LINE L2 0 3272 3208 229 360 129 6 chr6 183337542 183337720 -5941834 - MIR SINE MIR -46 216 17 3311 115 8 68 chr6 183338582 183339230 -5940324 + MER4B LTR ERV1 1 779 0 3007 110 12 0 chr6 183339304 183339699 -5939855 + MLT2A2 LTR ERVL 1 403 -50 261 0 0 0 chr6 183339699 183339728 -5939826 + (TG)n Simple_repeat Simple_repeat 2 30 0 3007 110 12 0 chr6 183339728 183339740 -5939814 + MLT2A2 LTR ERVL 403 413 -40 181 153 57 32 chr6 183339748 183339872 -5939682 + (TA)n Simple_repeat Simple_repeat 1 127 0 333 0 0 0 chr6 183339893 183339930 -5939624 + (TG)n Simple_repeat Simple_repeat 2 38 0 366 78 0 0 chr6 183339930 183339971 -5939583 + MLT2A2 LTR ERVL 409 452 -1 450 0 0 0 chr6 183340467 183340517 -5939037 + (CA)n Simple_repeat Simple_repeat 2 51 0 680 252 176 8 chr6 183343414 183343482 -5936072 + MER63C DNA MER1_type 57 112 -948 2157 78 4 0 chr6 183343482 183343753 -5935801 + AluY SINE Alu 1 272 -39 680 252 176 8 chr6 183343753 183344000 -5935554 + MER63C DNA MER1_type 112 435 -495 25 51 0 0 chr6 183344247 183344286 -5935268 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr6 183344439 183344461 -5935093 + AT_rich Low_complexity Low_complexity 1 22 0 2647 55 0 0 chr6 183344524 183344834 -5934720 - AluY SINE Alu -1 310 1 254 272 63 47 chr6 183344928 183345119 -5934435 - L1M4 LINE L1 -2573 3573 3380 285 277 64 82 chr6 183346080 183346484 -5933070 - HAL1b LINE L1 -864 484 88 315 0 0 0 chr6 183346740 183346775 -5932779 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 540 170 0 21 chr6 183346811 183346905 -5932649 - FRAM SINE Alu -15 161 70 820 173 0 0 chr6 183347092 183347225 -5932329 - FLAM_C SINE Alu -10 133 1 1248 122 235 31 chr6 183349153 183349408 -5930146 + AluSg1 SINE Alu 1 307 -2 2337 100 0 10 chr6 183349669 183349980 -5929574 + AluSx SINE Alu 1 308 -4 2045 180 112 0 chr6 183351774 183352157 -5927397 + MSTB LTR MaLR 1 426 0 1774 167 7 13 chr6 183353965 183354264 -5925290 - AluJb SINE Alu -14 298 2 231 204 177 18 chr6 183354594 183354707 -5924847 + L1ME4a LINE L1 5989 6119 -2 184 300 0 0 chr6 183355131 183355181 -5924373 + MIR SINE MIR 90 139 -123 269 258 0 34 chr6 183356046 183356135 -5923419 + HsTC2 DNA Tc2 16 101 -1797 351 354 16 16 chr6 183356670 183356797 -5922757 - L2 LINE L2 -8 3264 3138 198 0 0 0 chr6 183357000 183357022 -5922532 + (A)n Simple_repeat Simple_repeat 1 22 0 2214 105 7 13 chr6 183358016 183358322 -5921232 - AluSx SINE Alu -8 304 1 1009 38 49 10 chr6 183359564 183359768 -5919786 + (TAGA)n Simple_repeat Simple_repeat 1 212 0 2403 181 5 37 chr6 183359811 183360242 -5919312 + MER47B DNA MER2_type 1 417 -1 275 290 85 85 chr6 183362980 183363099 -5916455 - L2 LINE L2 -23 3249 3128 3233 143 38 6 chr6 183363099 183363596 -5915958 + LTR64 LTR ERVK 1 513 0 275 290 85 85 chr6 183363596 183363652 -5915902 - L2 LINE L2 -143 3129 3074 183 369 27 0 chr6 183363994 183364105 -5915449 - L2 LINE L2 -650 2664 2551 2145 112 3 3 chr6 183364128 183364422 -5915132 + AluSp SINE Alu 3 296 -17 374 69 207 0 chr6 183364683 183364741 -5914813 - MER4B LTR ERV1 -319 291 222 3648 151 59 2 chr6 183365136 183365712 -5913842 - MER4B LTR ERV1 -1 609 1 1170 126 0 23 chr6 183366236 183366411 -5913143 + AluSc SINE Alu 1 171 -138 1646 94 0 0 chr6 183366411 183366624 -5912930 + AluSc SINE Alu 90 302 -7 180 0 0 0 chr6 183366634 183366654 -5912900 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1476 182 51 20 chr6 183366765 183367107 -5912447 - MLT1A1 LTR MaLR 0 365 9 550 315 163 25 chr6 183369753 183370356 -5909198 - L2 LINE L2 -916 2398 1713 883 242 25 17 chr6 183370778 183371170 -5908384 + L1M4 LINE L1 2909 3417 -2729 180 356 0 0 chr6 183371443 183371502 -5908052 + L2 LINE L2 2260 2318 -996 2496 80 0 0 chr6 183371657 183371968 -5907586 - AluY SINE Alu 0 311 1 1880 35 9 13 chr6 183372620 183372846 -5906708 - AluY SINE Alu -6 305 81 948 279 86 35 chr6 183373089 183373576 -5905978 + LTR33 LTR ERVL 10 521 0 1594 150 44 29 chr6 183373589 183373862 -5905692 + THE1B LTR MaLR 1 277 -87 383 64 0 0 chr6 183374080 183374127 -5905427 - HY4 scRNA scRNA -46 47 1 1234 287 40 38 chr6 183374177 183374676 -5904878 + L1MC4a LINE L1 5255 5754 -2054 2083 174 42 30 chr6 183374730 183375263 -5904291 - MLT2A2 LTR ERVL 0 554 9 281 273 68 11 chr6 183375268 183375356 -5904198 + MLT2F LTR ERVL 44 136 -527 310 326 122 6 chr6 183375431 183375603 -5903951 + MLT2F LTR ERVL 239 430 -233 316 276 141 19 chr6 183375790 183375946 -5903608 + L1MC4a LINE L1 5751 5925 -1883 2269 100 3 0 chr6 183376655 183376955 -5902599 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr6 183377165 183377187 -5902367 + AT_rich Low_complexity Low_complexity 1 22 0 1966 129 20 3 chr6 183377745 183378061 -5901493 + AluSx SINE Alu 2 312 0 388 269 0 0 chr6 183379586 183379679 -5899875 - MER5A DNA MER1_type -84 105 13 295 320 119 51 chr6 183382986 183383514 -5896040 + L1ME LINE L1 5348 5604 -517 2358 148 34 14 chr6 183383567 183383924 -5895630 + THE1B LTR MaLR 1 364 0 12598 95 1 4 chr6 183383924 183385508 -5894046 + THE1B-int LTR MaLR 1 1580 0 2455 150 28 0 chr6 183385508 183385862 -5893692 + THE1B LTR MaLR 1 364 0 210 174 0 0 chr6 183385989 183386035 -5893519 + CT-rich Low_complexity Low_complexity 3 48 0 673 244 22 0 chr6 183386600 183386780 -5892774 - MER5A DNA MER1_type 0 189 6 199 349 81 47 chr6 183387688 183387923 -5891631 + L3 LINE CR1 1335 1577 0 24 0 0 0 chr6 183389113 183389137 -5890417 + AT_rich Low_complexity Low_complexity 1 24 0 197 327 167 0 chr6 183390163 183390313 -5889241 - L2 LINE L2 -1073 2241 2067 333 117 0 0 chr6 183391201 183391261 -5888293 + (CA)n Simple_repeat Simple_repeat 1 60 0 2509 177 17 11 chr6 183391485 183391949 -5887605 - MLT1C LTR MaLR 0 467 1 319 172 16 0 chr6 183391958 183392022 -5887532 - MLT1C-int LTR MaLR -9 1362 1298 698 309 182 10 chr6 183392027 183392522 -5887032 + MLT1G1 LTR MaLR 16 595 0 426 206 29 59 chr6 183392533 183392635 -5886919 + FRAM SINE Alu 71 169 -7 369 330 23 23 chr6 183392758 183392976 -5886578 + MLT1G1-int LTR MaLR 332 549 -822 306 288 89 20 chr6 183393722 183393868 -5885686 + MLT1G1-int LTR MaLR 1579 1734 -1 640 220 80 47 chr6 183393871 183394121 -5885433 + MLT1H1 LTR MaLR 3 290 -259 1894 104 40 22 chr6 183395214 183395492 -5884062 - AluSx SINE Alu -15 297 15 230 143 20 41 chr6 183396546 183396595 -5882959 + CT-rich Low_complexity Low_complexity 4 51 0 249 319 223 48 chr6 183396596 183397035 -5882519 + L2 LINE L2 2330 2845 -469 256 323 53 30 chr6 183397318 183397451 -5882103 - L2 LINE L2 -1 3271 3136 758 343 65 41 chr6 183397820 183398357 -5881197 - MLT1K LTR MaLR -26 562 13 351 284 32 0 chr6 183398376 183398471 -5881083 - L2 LINE L2 -249 3023 2926 183 80 0 0 chr6 183401318 183401343 -5878211 + (TAA)n Simple_repeat Simple_repeat 2 26 0 2243 165 34 3 chr6 183401727 183402079 -5877475 + MLT1A1 LTR MaLR 1 363 -2 220 283 50 0 chr6 183402683 183402743 -5876811 - L2 LINE L2 -9 3263 3201 21 36 0 0 chr6 183403293 183403321 -5876233 + AT_rich Low_complexity Low_complexity 1 28 0 857 307 71 40 chr6 183403417 183403971 -5875583 + L1ME3A LINE L1 5328 5912 -258 2414 128 45 25 chr6 183403971 183404370 -5875184 - MSTA LTR MaLR 0 428 22 2023 154 3 0 chr6 183404881 183405192 -5874362 + AluSx SINE Alu 1 312 0 29 28 0 0 chr6 183405192 183405228 -5874326 + AT_rich Low_complexity Low_complexity 1 36 0 394 267 64 46 chr6 183405773 183405824 -5873730 + L1M4 LINE L1 4299 4348 -1798 234 91 0 0 chr6 183405824 183405857 -5873697 + (TG)n Simple_repeat Simple_repeat 2 34 0 394 267 64 46 chr6 183405857 183406086 -5873468 + L1M4 LINE L1 4348 4584 -1562 712 272 112 17 chr6 183406412 183406644 -5872910 - MIR SINE MIR 0 262 9 2491 90 3 0 chr6 183407088 183407398 -5872156 + AluSx SINE Alu 1 311 -1 352 319 108 6 chr6 183407782 183407939 -5871615 - MIR SINE MIR -18 244 72 207 240 67 0 chr6 183408606 183408681 -5870873 + MIR SINE MIR 147 226 -36 213 282 129 12 chr6 183410651 183410736 -5868818 - MIR SINE MIR -50 212 118 304 324 91 45 chr6 183411402 183411711 -5867843 + HAL1b LINE L1 331 653 -695 2393 55 3 67 chr6 183411715 183412044 -5867510 + AluY SINE Alu 1 308 -3 2240 97 3 0 chr6 183412118 183412408 -5867146 + AluSg SINE Alu 1 291 -19 1671 257 111 21 chr6 183412723 183413497 -5866057 - L1ME3A LINE L1 -25 6145 5302 2455 120 11 0 chr6 183413579 183413937 -5865617 + THE1B LTR MaLR 3 364 0 507 81 0 71 chr6 183413942 183414041 -5865513 - MER2 DNA MER2_type -135 210 119 * 852 173 13 0 chr6 183414040 183414190 -5865364 - MER2 DNA MER2_type -193 152 1 746 242 56 25 chr6 183414195 183414517 -5865037 - L1ME3A LINE L1 -846 5300 4969 2369 97 3 0 chr6 183415457 183415766 -5863788 + AluSx SINE Alu 1 310 -2 213 204 0 0 chr6 183416045 183416094 -5863460 + CT-rich Low_complexity Low_complexity 2 50 0 219 241 111 0 chr6 183418147 183418201 -5861353 + MIR SINE MIR 84 143 -119 393 381 90 0 chr6 183418377 183418600 -5860954 - MIR SINE MIR -5 257 15 2135 205 4 20 chr6 183420232 183420794 -5858760 - L1PB4 LINE L1 -1396 4750 4198 * 4812 158 19 27 chr6 183420790 183422194 -5857360 + L1PB4 LINE L1 4759 6155 -1 755 274 87 57 chr6 183422784 183423280 -5856274 - MER77 LTR ERV1 -41 564 54 2081 282 87 115 chr6 183423280 183424491 -5855063 - L2 LINE L2 -41 3272 2028 2783 85 3 8 chr6 183424491 183424867 -5854687 - THE1C LTR MaLR 0 375 2 10935 102 28 5 chr6 183424868 183426412 -5853142 - THE1C-int LTR MaLR 0 1580 1 2734 101 5 8 chr6 183426412 183426788 -5852766 - THE1C LTR MaLR 0 375 1 2081 282 87 115 chr6 183426788 183428391 -5851163 - L2 LINE L2 -1283 2030 527 4026 135 11 2 chr6 183429118 183429747 -5849807 + MER41B LTR ERV1 1 635 0 181 239 109 101 chr6 183429808 183429946 -5849608 - L2 LINE L2 -751 2563 2425 207 260 27 0 chr6 183429969 183430042 -5849512 - MIR SINE MIR -129 133 59 326 331 50 33 chr6 183430116 183430297 -5849257 + MIR3 SINE MIR 4 187 -21 589 256 37 37 chr6 183430772 183431018 -5848536 + MER63 DNA MER1_type 781 1026 -36 2169 127 16 3 chr6 183432105 183432412 -5847142 + AluSq SINE Alu 1 311 -2 1747 234 7 38 chr6 183432654 183432803 -5846751 - MER74A LTR ERVL -26 532 380 2115 120 0 0 chr6 183432803 183433153 -5846401 + AluSq SINE Alu 2 351 0 1747 234 7 38 chr6 183433153 183433426 -5846128 - MER74A LTR ERVL -178 380 122 4171 180 17 51 chr6 183434647 183434739 -5844815 - L1MA9 LINE L1 -33 6279 6185 6921 145 37 24 chr6 183434739 183435324 -5844230 + HSMAR2 DNA Mariner 2 578 -724 2521 57 0 0 chr6 183435324 183435620 -5843934 - AluY SINE Alu -15 296 1 6921 145 37 24 chr6 183435620 183436316 -5843238 + HSMAR2 DNA Mariner 578 1300 -2 4171 180 17 51 chr6 183436316 183437283 -5842271 - L1MA9 LINE L1 -127 6185 5256 24 32 0 0 chr6 183439481 183439512 -5840042 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr6 183439956 183439979 -5839575 + AT_rich Low_complexity Low_complexity 1 23 0 374 308 60 19 chr6 183441017 183441176 -5838378 + MIR SINE MIR 42 205 -57 1064 177 80 0 chr6 183442218 183442444 -5837110 + L1MC3 LINE L1 6244 6487 -1298 4216 205 44 16 chr6 183442539 183443669 -5835885 + L1MC2 LINE L1 5023 6196 -148 2198 111 73 14 chr6 183443669 183444013 -5835541 - THE1B LTR MaLR 0 364 1 4216 205 44 16 chr6 183444013 183444162 -5835392 + L1MC2 LINE L1 6196 6339 -5 2781 188 52 17 chr6 183444165 183444819 -5834735 + L1MC3 LINE L1 5893 6569 -1216 347 317 106 0 chr6 183445002 183445163 -5834391 + MIR SINE MIR 85 262 0 584 288 71 66 chr6 183445449 183445856 -5833698 + MLT1J1 LTR MaLR 34 442 -4 2341 213 33 6 chr6 183446008 183446557 -5832997 + L1MC2 LINE L1 5425 5988 -356 1034 274 111 5 chr6 183447580 183447959 -5831595 + MLT2E LTR ERVL 2 420 -208 1599 153 86 47 chr6 183448345 183448705 -5830849 + MLT1A2 LTR MaLR 1 374 0 954 215 83 0 chr6 183448926 183449131 -5830423 + MER58A DNA MER1_type 2 223 -1 924 245 37 0 chr6 183449182 183449455 -5830099 - L1MCc LINE L1 -6123 300 18 189 0 0 0 chr6 183450632 183450653 -5828901 + (T)n Simple_repeat Simple_repeat 1 21 0 2113 132 6 15 chr6 183450748 183451012 -5828542 + MER1B DNA MER1_type 2 264 -2448 2392 135 6 3 chr6 183451012 183451375 -5828179 + THE1B LTR MaLR 1 364 0 2113 132 6 15 chr6 183451375 183451451 -5828103 + MER1B DNA MER1_type 264 339 0 265 277 204 13 chr6 183451984 183452219 -5827335 - L1ME LINE L1 -335 5818 5539 312 258 31 10 chr6 183452276 183452373 -5827181 - L1ME LINE L1 -786 5361 5263 252 273 13 13 chr6 183452373 183452450 -5827104 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 247 284 74 30 chr6 183452450 183452749 -5826805 - L1ME LINE L1 -874 5255 4944 361 279 130 11 chr6 183452978 183453247 -5826307 - L1ME LINE L1 -1443 4686 4386 479 317 108 50 chr6 183453289 183453739 -5825815 - L1ME LINE L1 -3439 2690 2268 1344 144 156 72 chr6 183453739 183454085 -5825469 + THE1C LTR MaLR 1 375 0 9051 123 57 39 chr6 183454088 183455636 -5823918 + THE1C-int LTR MaLR 4 1578 -2 2413 131 16 11 chr6 183455638 183456011 -5823543 + THE1C LTR MaLR 1 375 0 479 317 108 50 chr6 183456011 183456098 -5823456 - L1ME LINE L1 -3862 2267 2114 211 136 23 0 chr6 183456067 183456111 -5823443 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 * 1797 163 14 14 chr6 183456115 183456404 -5823150 + AluSx SINE Alu 1 289 -23 447 167 19 162 chr6 183457128 183457344 -5822210 + MER53 DNA DNA 1 185 -4 381 325 0 0 chr6 183457425 183457539 -5822015 - L1ME LINE L1 -5444 675 562 289 241 26 103 chr6 183457654 183457770 -5821784 + L2 LINE L2 2284 2390 -924 2288 287 88 38 chr6 183458046 183459032 -5820522 + L2 LINE L2 1907 2942 -372 581 307 94 44 chr6 183459216 183459341 -5820213 + L2 LINE L2 2933 3050 -263 2489 93 0 0 chr6 183459341 183459653 -5819901 - AluSx SINE Alu 0 312 1 581 307 94 44 chr6 183459653 183459889 -5819665 + L2 LINE L2 3050 3312 -1 2652 40 0 0 chr6 183461950 183462253 -5817301 - AluY SINE Alu -8 303 1 284 301 0 19 chr6 183462428 183462531 -5817023 + MIR SINE MIR 76 176 -86 1643 201 3 6 chr6 183463639 183463952 -5815602 + AluJo SINE Alu 1 312 0 1065 90 11 6 chr6 183463971 183464149 -5815405 + (GAA)n Simple_repeat Simple_repeat 2 180 0 182 348 122 0 chr6 183464652 183464767 -5814787 + L2 LINE L2 3180 3308 -5 328 321 64 21 chr6 183466125 183466312 -5813242 + L1M4 LINE L1 2112 2306 -3840 22 0 0 0 chr6 183466575 183466597 -5812957 + AT_rich Low_complexity Low_complexity 1 22 0 705 285 31 21 chr6 183466717 183467143 -5812411 - MLT1G1 LTR MaLR -35 560 27 4029 41 2 0 chr6 183467573 183468058 -5811496 - L1PA5 LINE L1 -1 6153 5668 1112 188 156 49 chr6 183468459 183468844 -5810710 + MLT1A1 LTR MaLR 1 396 0 * 1638 142 21 77 chr6 183468844 183469179 -5810375 + MLT1B LTR MaLR 65 380 -10 1028 249 161 39 chr6 183469718 183470204 -5809350 - MLT1H LTR MaLR -4 545 1 297 0 0 0 chr6 183470257 183470290 -5809264 + (ATG)n Simple_repeat Simple_repeat 2 34 0 1987 110 14 0 chr6 183470301 183470582 -5808972 - AluSp SINE Alu -28 285 1 255 97 32 16 chr6 183471457 183471519 -5808035 + A-rich Low_complexity Low_complexity 4 66 0 195 321 62 0 chr6 183471842 183471954 -5807600 - MIR SINE MIR -50 212 94 706 314 37 12 chr6 183471987 183472232 -5807322 + MIR SINE MIR 11 261 -1 321 238 81 100 chr6 183472404 183472701 -5806853 + Charlie8 DNA MER1_type 34 2412 -5 306 0 0 0 chr6 183473220 183473254 -5806300 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 360 315 9 9 chr6 183474021 183474129 -5805425 - L2 LINE L2 0 3313 3206 542 239 43 38 chr6 183474155 183474339 -5805215 + MER58A DNA MER1_type 38 222 -2 181 377 33 64 chr6 183474356 183474636 -5804918 + L2 LINE L2 2905 3175 -97 1983 121 70 14 chr6 183474636 183474991 -5804563 + THE1C LTR MaLR 1 375 0 181 377 33 64 chr6 183474991 183475039 -5804515 + L2 LINE L2 3175 3223 -49 2258 140 43 5 chr6 183475214 183475586 -5803968 + MER57A LTR ERV1 1 386 -17 183 85 64 0 chr6 183475588 183475635 -5803919 + (TA)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr6 183475794 183475819 -5803735 + AT_rich Low_complexity Low_complexity 1 25 0 713 193 0 15 chr6 183476662 183476797 -5802757 - FLAM_C SINE Alu 0 133 1 1913 150 88 53 chr6 183477033 183477485 -5802069 + LTR12 LTR ERV1 1 481 -233 1449 233 50 41 chr6 183477642 183478030 -5801524 + MLT1C LTR MaLR 1 395 -72 2097 140 3 0 chr6 183478030 183478322 -5801232 - AluSx SINE Alu -19 293 1 1449 233 50 41 chr6 183478322 183478396 -5801158 + MLT1C LTR MaLR 395 467 0 439 286 118 10 chr6 183478421 183478624 -5800930 + LTR33 LTR ERVL 1 225 -296 582 197 92 7 chr6 183478643 183478785 -5800769 - MER105 DNA DNA -27 177 24 266 306 38 48 chr6 183478857 183479043 -5800511 + LTR33 LTR ERVL 338 521 0 783 297 19 84 chr6 183479897 183480314 -5799240 + L2 LINE L2 2920 3309 -4 2280 118 0 0 chr6 183480455 183480768 -5798786 + AluSp SINE Alu 1 313 0 387 293 13 0 chr6 183481240 183481390 -5798164 + (TA)n Simple_repeat Simple_repeat 2 153 0 2411 88 0 0 chr6 183481406 183481711 -5797843 - AluSq SINE Alu -7 306 2 23 0 0 0 chr6 183482077 183482100 -5797454 + AT_rich Low_complexity Low_complexity 1 23 0 363 44 0 0 chr6 183482580 183482625 -5796929 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1254 254 74 70 chr6 183482701 183483166 -5796388 + MER45R DNA AcHobo 8 477 -1104 2016 131 14 0 chr6 183483166 183483456 -5796098 + AluSc SINE Alu 1 294 -15 1254 254 74 70 chr6 183483456 183483529 -5796025 + MER45R DNA AcHobo 477 548 -1033 4518 228 25 66 chr6 183483543 183484966 -5794588 + L1MB7 LINE L1 2 1366 -5176 251 223 0 64 chr6 183484989 183485083 -5794471 + L1MB7 LINE L1 2292 2379 -4267 8092 231 96 21 chr6 183485095 183487967 -5791587 + L1MB7 LINE L1 2514 5769 -913 2344 74 3 23 chr6 183487967 183488276 -5791278 + AluY SINE Alu 1 303 -8 8092 231 96 21 chr6 183488276 183489245 -5790309 + L1MB7 LINE L1 5769 6664 -18 1307 151 22 0 chr6 183489245 183489477 -5790077 + MER45R DNA AcHobo 555 791 -790 2567 184 20 18 chr6 183489490 183490039 -5789515 + MER45R DNA AcHobo 674 1223 -358 1415 176 94 9 chr6 183490317 183490636 -5788918 + MER45R DNA AcHobo 1236 1581 0 339 303 124 43 chr6 183490869 183491054 -5788500 + MER20 DNA MER1_type 1 200 -19 2466 181 58 2 chr6 183491091 183491538 -5788016 - MER70A LTR ERVL 0 472 1 25 31 0 0 chr6 183492315 183492347 -5787207 + AT_rich Low_complexity Low_complexity 1 32 0 210 158 0 0 chr6 183493125 183493163 -5786391 + (TATG)n Simple_repeat Simple_repeat 3 40 0 582 282 16 37 chr6 183493270 183493458 -5786096 - MIR SINE MIR -73 189 6 980 272 90 0 chr6 183493554 183493833 -5785721 - LTR40b LTR ERVL -38 424 121 3356 162 95 1 chr6 183493857 183494528 -5785026 - L1MA8 LINE L1 -8 6283 5550 188 86 29 0 chr6 183494859 183494894 -5784660 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 1469 97 5 0 chr6 183495011 183495218 -5784336 - L1M1 LINE L1 -496 5806 5599 2361 99 0 0 chr6 183497506 183497808 -5781746 - AluSg SINE Alu -8 302 1 265 293 117 39 chr6 183498636 183498919 -5780635 - L1ME LINE L1 -303 5818 5514 1653 201 0 3 chr6 183499013 183499301 -5780253 - AluJo SINE Alu -25 287 1 1341 153 44 101 chr6 183499414 183499451 -5780103 - L1MA9 LINE L1 -39 6273 6235 402 115 0 0 chr6 183499451 183499512 -5780042 + (TA)n Simple_repeat Simple_repeat 2 62 0 1341 153 44 101 chr6 183499512 183499859 -5779695 - L1MA9 LINE L1 -77 6235 5911 296 193 48 24 chr6 183499900 183499983 -5779571 + L1M3 LINE L1 5716 5800 -534 401 0 20 0 chr6 183499998 183500047 -5779507 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 447 171 0 23 chr6 183500069 183500114 -5779440 - L1MA9 LINE L1 -445 5867 5823 2199 122 0 3 chr6 183500114 183500418 -5779136 - AluSp SINE Alu -10 303 1 447 171 0 23 chr6 183500418 183500460 -5779094 - L1MA9 LINE L1 -489 5823 5782 259 269 34 20 chr6 183500541 183500690 -5778864 + (TA)n Simple_repeat Simple_repeat 1 151 0 513 287 116 58 chr6 183500745 183501090 -5778464 - L2 LINE L2 0 3313 2949 223 319 0 0 chr6 183501093 183501162 -5778392 - L2 LINE L2 -508 2806 2738 1801 163 0 3 chr6 183501541 183501823 -5777731 - AluJo SINE Alu -31 281 1 258 218 121 16 chr6 183501926 183502050 -5777504 - L1ME4a LINE L1 -1 6120 5984 270 0 0 0 chr6 183503751 183503781 -5775773 + (A)n Simple_repeat Simple_repeat 1 30 0 28 99 0 0 chr6 183504885 183504976 -5774578 + AT_rich Low_complexity Low_complexity 1 91 0 677 279 115 59 chr6 183505113 183505400 -5774154 + MLT1G1 LTR MaLR 1 303 -292 210 242 0 0 chr6 183505479 183505545 -5774009 + (TA)n Simple_repeat Simple_repeat 1 66 0 2158 122 3 25 chr6 183505639 183505958 -5773596 + AluSx SINE Alu 1 312 0 22 35 0 0 chr6 183506032 183506061 -5773493 + AT_rich Low_complexity Low_complexity 1 29 0 344 296 0 8 chr6 183506159 183506284 -5773270 + L1ME4a LINE L1 5979 6102 -19 22 0 0 0 chr6 183506767 183506789 -5772765 + AT_rich Low_complexity Low_complexity 1 22 0 219 307 70 44 chr6 183508039 183508153 -5771401 + MER5B DNA MER1_type 1 117 -61 695 301 81 55 chr6 183508610 183509507 -5770047 + L1MC/D LINE L1 730 1731 -4579 275 71 24 0 chr6 183509538 183509580 -5769974 + (TG)n Simple_repeat Simple_repeat 2 44 0 248 307 59 72 chr6 183509628 183510116 -5769438 + L1MC/D LINE L1 3696 4177 -1952 570 288 77 44 chr6 183510209 183510520 -5769034 + L1MC/D LINE L1 4730 5029 -1100 1397 220 54 11 chr6 183510520 183510870 -5768684 + MLT1A1 LTR MaLR 1 365 0 570 288 77 44 chr6 183510870 183511152 -5768402 + L1MC/D LINE L1 5029 5343 -786 316 253 0 0 chr6 183511158 183511253 -5768301 + L1MC/D LINE L1 5355 5449 -2342 244 284 95 29 chr6 183511356 183511662 -5767892 - L1M4 LINE L1 -1555 4591 4266 283 222 28 0 chr6 183511704 183511776 -5767778 + MLT1A2 LTR MaLR 33 106 -268 556 192 32 0 chr6 183511824 183511949 -5767605 + Charlie5 DNA MER1_type 2327 2455 -157 4056 119 26 2 chr6 183513156 183513776 -5765778 + MER41B LTR ERV1 1 635 0 2879 71 95 2 chr6 183514112 183514522 -5765032 - LTR7 LTR ERV1 -2 448 1 2200 101 48 13 chr6 183514522 183514899 -5764655 - HERVH LTR ERV1 0 7713 7324 1250 122 38 5 chr6 183514899 183515112 -5764442 - HERVH LTR ERV1 -1894 5819 5600 4091 141 1 1 chr6 183515113 183515775 -5763779 - HERVH LTR ERV1 -2564 5149 4488 3267 97 4 6 chr6 183515775 183516272 -5763282 - HERVH LTR ERV1 -3718 3995 3500 811 149 20 0 chr6 183516271 183516419 -5763135 - HERVH LTR ERV1 -4423 3290 3140 * 1916 118 0 12 chr6 183516413 183516735 -5762819 - HERVH LTR ERV1 -4726 2987 2670 10912 90 8 29 chr6 183516839 183518592 -5760962 - HERVH LTR ERV1 -5387 2326 611 4708 99 22 32 chr6 183518597 183519470 -5760084 - HERVH LTR ERV1 -6942 771 1 2820 73 98 2 chr6 183519472 183519881 -5759673 - LTR7 LTR ERV1 -2 448 1 273 290 130 0 chr6 183520213 183520351 -5759203 - MER103 DNA DNA -9 157 2 3343 117 2 4 chr6 183520866 183521389 -5758165 - MER41B LTR ERV1 0 635 114 224 310 169 51 chr6 183523042 183523275 -5756279 - L2 LINE L2 -441 2873 2669 327 65 0 0 chr6 183523275 183523321 -5756233 + (CA)n Simple_repeat Simple_repeat 1 46 0 224 310 169 51 chr6 183523321 183523500 -5756054 - L2 LINE L2 -645 2669 2412 313 300 59 21 chr6 183524795 183525342 -5754212 - L1MC4 LINE L1 -754 7207 6718 229 233 33 0 chr6 183525584 183525644 -5753910 - L1MC4 LINE L1 -201 7841 7780 608 212 0 20 chr6 183525717 183525868 -5753686 + L1MC/D LINE L1 3899 4046 -2100 303 269 77 33 chr6 183525878 183526060 -5753494 + L1MC/D LINE L1 5640 5829 -1979 25 0 0 0 chr6 183526638 183526663 -5752891 + AT_rich Low_complexity Low_complexity 1 25 0 198 379 87 12 chr6 183526786 183526947 -5752607 - MIR SINE MIR -34 228 56 601 256 105 46 chr6 183526948 183527505 -5752049 - L1ME LINE L1 -358 5804 5215 4410 130 27 2 chr6 183527853 183529492 -5750062 - L1PA16 LINE L1 -1 6165 4466 312 228 59 0 chr6 183529508 183529609 -5749945 + L1PA16 LINE L1 4357 4463 -1683 300 337 124 48 chr6 183529617 183529890 -5749664 - L1M2 LINE L1 -5858 991 698 228 211 19 19 chr6 183530044 183530096 -5749458 - AluJ/monomer SINE Alu -250 52 1 7532 248 35 11 chr6 183530193 183533041 -5746513 - L1PA15-16 LINE L1 -2028 4821 1879 279 0 0 0 chr6 183533271 183533302 -5746252 + (TA)n Simple_repeat Simple_repeat 1 31 0 287 213 40 53 chr6 183534385 183534460 -5745094 - LTR28 LTR ERV1 -42 978 905 820 235 110 46 chr6 183534567 183534984 -5744570 - LTR1B LTR ERV1 -333 493 50 1163 273 21 0 chr6 183535309 183535642 -5743912 + MER58B DNA MER1_type 2 341 0 261 333 47 8 chr6 183535914 183536043 -5743511 + MIR3 SINE MIR 74 207 -1 203 389 0 11 chr6 183537083 183537173 -5742381 - L3b LINE CR1 -116 1467 1379 404 285 48 59 chr6 183537972 183538158 -5741396 + L1MEc LINE L1 198 381 -6015 765 274 48 0 chr6 183538162 183538410 -5741144 + L1MEc LINE L1 433 692 -5704 306 233 0 10 chr6 183538455 183538558 -5740996 + L1MEc LINE L1 996 1097 -5299 3811 254 40 25 chr6 183538701 183538780 -5740774 + L1MEc LINE L1 2325 2401 -3814 2675 29 3 0 chr6 183538780 183539087 -5740467 + AluY SINE Alu 1 308 -3 3811 254 40 25 chr6 183539087 183540592 -5738962 + L1MEc LINE L1 2401 3934 -2281 1707 242 76 31 chr6 183540592 183541048 -5738506 - MLT1E2 LTR MaLR 0 626 154 2292 92 0 0 chr6 183541048 183541340 -5738214 - AluSc SINE Alu -17 292 1 1707 242 76 31 chr6 183541340 183541501 -5738053 - MLT1E2 LTR MaLR -472 154 2 997 246 54 100 chr6 183541657 183541750 -5737804 + L1MEc LINE L1 3981 4077 -2138 2906 6 0 0 chr6 183541750 183542065 -5737489 + AluYb8 SINE Alu 1 315 -3 997 246 54 100 chr6 183542065 183542114 -5737440 + L1MEc LINE L1 4077 4127 -2088 1670 181 77 37 chr6 183542114 183542489 -5737065 + MLT1B LTR MaLR 1 390 0 997 246 54 100 chr6 183542489 183542977 -5736577 + L1MEc LINE L1 4127 4564 -1651 180 77 0 0 chr6 183542977 183543003 -5736551 + (TG)n Simple_repeat Simple_repeat 2 27 0 997 246 54 100 chr6 183543003 183543229 -5736325 + L1MEc LINE L1 4564 4799 -1416 438 249 103 54 chr6 183543312 183543757 -5735797 - MLT1H1 LTR MaLR 0 555 79 240 395 0 0 chr6 183544041 183544117 -5735437 + LTR67 LTR ERVL 119 194 -363 415 289 99 0 chr6 183544238 183544380 -5735174 + LTR67 LTR ERVL 322 477 -80 1070 246 62 51 chr6 183544544 183544764 -5734790 - LTR16A1 LTR ERVL 0 457 241 464 279 9 0 chr6 183544764 183544875 -5734679 - MER81 DNA DNA 0 114 3 1070 246 62 51 chr6 183544875 183545102 -5734452 - LTR16A1 LTR ERVL -216 241 5 3052 114 12 35 chr6 183545123 183545544 -5734010 + MER75 DNA T2_type 1 409 -105 2043 145 7 0 chr6 183545544 183545840 -5733714 + AluSx SINE Alu 1 298 -14 3052 114 12 35 chr6 183545840 183545934 -5733620 + MER75 DNA T2_type 409 504 -10 582 221 34 93 chr6 183546244 183546448 -5733106 + LTR16A1 LTR ERVL 19 210 -247 186 282 77 60 chr6 183546669 183546786 -5732768 + L2 LINE L2 3192 3310 -3 344 364 8 53 chr6 183547139 183547386 -5732168 + MIR SINE MIR 2 237 -25 199 273 18 0 chr6 183547506 183547561 -5731993 + L3b LINE CR1 1277 1332 -251 1087 211 114 33 chr6 183547703 183548106 -5731448 + MER39 LTR ERV1 265 585 0 325 242 90 28 chr6 183548235 183548446 -5731108 - HAL1b LINE L1 -48 1300 1077 212 57 0 29 chr6 183548689 183548724 -5730830 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 246 256 51 58 chr6 183548726 183548882 -5730672 - HAL1b LINE L1 -635 713 559 28 0 0 0 chr6 183549388 183549416 -5730138 + AT_rich Low_complexity Low_complexity 1 28 0 3519 202 55 10 chr6 183549486 183550356 -5729198 - Charlie1a DNA MER1_type -528 927 19 258 231 11 44 chr6 183551887 183551978 -5727576 - MER34 LTR ERV1 -2 540 453 1362 176 64 72 chr6 183552032 183552407 -5727147 - MER34B LTR ERV1 -185 380 9 259 318 259 0 chr6 183553832 183554021 -5725533 - MIR SINE MIR -20 242 5 218 289 19 0 chr6 183555525 183555577 -5723977 - L2 LINE L2 -19 3294 3242 481 299 58 0 chr6 183555653 183555751 -5723803 - AluJo SINE Alu -80 232 120 1990 122 7 0 chr6 183555751 183556030 -5723524 - AluSx SINE Alu -10 302 22 481 299 58 0 chr6 183556030 183556085 -5723469 - AluJo SINE Alu -192 120 70 760 294 83 45 chr6 183556116 183556792 -5722762 - L1MCa LINE L1 -4530 2592 1670 1154 153 5 0 chr6 183556792 183556988 -5722566 - L1PB3 LINE L1 -2 6152 5956 760 294 83 45 chr6 183556988 183557102 -5722452 - L1MCa LINE L1 -5452 1670 1562 1424 211 119 53 chr6 183557105 183557559 -5721995 + MLT1D LTR MaLR 1 484 -21 1333 260 91 32 chr6 183557561 183558180 -5721374 - L1MCa LINE L1 -4962 1461 807 621 323 86 15 chr6 183558373 183558782 -5720772 - L1MCa LINE L1 -5926 497 60 317 139 61 43 chr6 183558787 183558902 -5720652 + (TATAA)n Simple_repeat Simple_repeat 3 119 0 23 33 0 0 chr6 183560296 183560326 -5719228 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr6 183560524 183560548 -5719006 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 183560724 183560753 -5718801 + AT_rich Low_complexity Low_complexity 1 29 0 242 330 98 15 chr6 183561015 183561218 -5718336 - L1ME LINE L1 -260 5893 5674 343 312 64 42 chr6 183561223 183561675 -5717879 - L1ME LINE L1 -864 5265 4804 312 295 80 40 chr6 183562826 183563050 -5716504 - L1ME LINE L1 -3987 2142 1910 486 295 91 80 chr6 183563238 183563904 -5715650 - L1MEc LINE L1 -4457 1672 804 23 0 0 0 chr6 183563956 183563979 -5715575 + AT_rich Low_complexity Low_complexity 1 23 0 329 321 138 62 chr6 183564041 183564542 -5715012 - L1MEc LINE L1 -5477 642 104 207 265 82 97 chr6 183565065 183565156 -5714398 - MIR SINE MIR -12 250 159 2655 35 0 3 chr6 183565156 183565468 -5714086 - AluY SINE Alu 0 311 1 207 265 82 97 chr6 183565468 183565572 -5713982 - MIR SINE MIR -103 159 58 4485 264 55 29 chr6 183566226 183567638 -5711916 - L1ME1 LINE L1 -5 6956 5582 1868 149 14 3 chr6 183567638 183567933 -5711621 - AluSx SINE Alu -14 298 1 4485 264 55 29 chr6 183567933 183569322 -5710232 - L1ME1 LINE L1 -1379 5582 4084 1695 288 59 34 chr6 183569326 183569956 -5709598 - L1ME1 LINE L1 -3577 3364 2751 2556 44 0 0 chr6 183569956 183570254 -5709300 - AluY SINE Alu -12 299 2 1695 288 59 34 chr6 183570254 183571251 -5708303 - L1ME1 LINE L1 -4190 2751 1556 243 326 87 64 chr6 183571316 183571927 -5707627 - L1ME1 LINE L1 -5445 978 354 885 196 69 25 chr6 183571964 183572209 -5707345 - L1ME1 LINE L1 -6150 273 18 746 143 0 109 chr6 183572800 183572947 -5706607 + FLAM_A SINE Alu 1 131 -2 26 30 0 0 chr6 183573706 183573739 -5705815 + AT_rich Low_complexity Low_complexity 1 33 0 241 215 15 0 chr6 183574412 183574477 -5705077 - L1MC4a LINE L1 -2 7806 7741 * 2720 267 101 42 chr6 183574476 183577154 -5702400 - L1MC/D LINE L1 -763 5759 3015 1968 202 16 45 chr6 183577169 183577614 -5701940 - MER73 LTR ERVL -161 483 52 974 253 95 52 chr6 183577614 183577800 -5701754 - L1MCa LINE L1 -3436 2990 2813 1811 174 10 3 chr6 183577800 183578105 -5701449 - AluJb SINE Alu -3 309 3 974 253 95 52 chr6 183578105 183579107 -5700447 - L1MCa LINE L1 -3613 2813 1583 2556 71 0 0 chr6 183579107 183579417 -5700137 - AluY SINE Alu -1 310 1 974 253 95 52 chr6 183579417 183579682 -5699872 - L1MCa LINE L1 -4843 1583 1331 285 29 0 0 chr6 183579689 183579723 -5699831 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 518 302 53 29 chr6 183579723 183579968 -5699586 - L1MCc LINE L1 -4159 2979 2729 254 73 24 0 chr6 183579973 183580014 -5699540 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 374 270 63 36 chr6 183580024 183580187 -5699367 - L1MCc LINE L1 -4985 1962 1795 3262 167 26 26 chr6 183580189 183580800 -5698754 - MER73 LTR ERVL 0 644 34 928 251 49 42 chr6 183580840 183581317 -5698237 - L1MCc LINE L1 -4887 1552 1153 1032 331 114 9 chr6 183581376 183581805 -5697749 - L1MCc LINE L1 -6288 571 98 201 74 0 0 chr6 183581805 183581832 -5697722 + (TG)n Simple_repeat Simple_repeat 2 28 0 454 307 129 65 chr6 183581916 183582437 -5697117 - HAL1 LINE L1 -1817 690 137 22 35 0 0 chr6 183582563 183582592 -5696962 + AT_rich Low_complexity Low_complexity 1 29 0 32 57 0 0 chr6 183582760 183582813 -5696741 + AT_rich Low_complexity Low_complexity 1 53 0 206 293 89 49 chr6 183583735 183583858 -5695696 - MIR3 SINE MIR 0 208 81 221 264 77 22 chr6 183585259 183585350 -5694204 - L2 LINE L2 -15 3257 3162 181 339 32 0 chr6 183585984 183586046 -5693508 - L2 LINE L2 -51 3262 3199 755 271 71 40 chr6 183587249 183587754 -5691800 - MER113 DNA MER1_type? 0 521 1 240 357 16 39 chr6 183588979 183589108 -5690446 + L2 LINE L2 2266 2391 -923 244 318 171 8 chr6 183589914 183590043 -5689511 + L2 LINE L2 3102 3251 -21 385 284 115 7 chr6 183590161 183590309 -5689245 - MER58A DNA MER1_type 0 166 3 405 121 0 0 chr6 183590351 183590417 -5689137 - L1MA9 LINE L1 -8 6304 6239 253 323 0 0 chr6 183592945 183593007 -5686547 + L2 LINE L2 3210 3271 -1 1871 67 32 0 chr6 183594051 183594304 -5685250 - L1PA8 LINE L1 -11 6161 5901 185 301 24 48 chr6 183595195 183595278 -5684276 - L2 LINE L2 -844 2470 2390 198 275 25 25 chr6 183595407 183595487 -5684067 + L2 LINE L2 1630 1709 -1605 793 328 129 39 chr6 183595564 183596393 -5683161 + L2 LINE L2 1726 2629 -685 1765 155 160 19 chr6 183596636 183597011 -5682543 + MSTA LTR MaLR 1 428 0 8772 149 15 45 chr6 183597015 183598453 -5681101 + MSTA-int LTR MaLR 5 1390 -190 2462 74 0 0 chr6 183598453 183598749 -5680805 - AluY SINE Alu -15 296 1 8772 149 15 45 chr6 183598749 183598935 -5680619 + MSTA-int LTR MaLR 1390 1580 0 943 184 197 13 chr6 183598935 183599114 -5680440 + MSTA LTR MaLR 1 236 -192 324 0 0 0 chr6 183599114 183599150 -5680404 + (TC)n Simple_repeat Simple_repeat 2 37 0 943 184 197 13 chr6 183599150 183599209 -5680345 + MSTA LTR MaLR 236 283 -145 1139 170 119 21 chr6 183599211 183599446 -5680108 + MSTA LTR MaLR 171 428 0 23 33 0 0 chr6 183599739 183599769 -5679785 + AT_rich Low_complexity Low_complexity 1 30 0 1066 304 61 30 chr6 183599872 183600411 -5679143 + L1M4 LINE L1 16 571 -5971 996 193 50 73 chr6 183600404 183600746 -5678808 + L1M4 LINE L1 4417 4750 -1396 * 522 308 24 0 chr6 183600751 183600920 -5678634 + ERVL LTR ERVL 2144 2316 -3448 2285 92 7 0 chr6 183601226 183601519 -5678035 - AluSg SINE Alu -15 295 1 709 248 64 16 chr6 183601927 183602202 -5677352 - MLT1H1 LTR MaLR -298 257 15 41 58 0 0 chr6 183602855 183602924 -5676630 + AT_rich Low_complexity Low_complexity 1 69 0 1534 191 110 8 chr6 183606009 183606364 -5673190 + MSTD LTR MaLR 6 396 0 245 339 16 68 chr6 183606716 183606908 -5672646 - L2 LINE L2 -1369 1945 1764 879 339 100 44 chr6 183607044 183607549 -5672005 - L2 LINE L2 -869 2445 1970 1091 217 159 29 chr6 183607549 183607963 -5671591 + MER110A LTR ERV1 1 468 0 879 339 100 44 chr6 183607963 183608385 -5671169 - L2 LINE L2 -1344 1970 1466 1540 242 8 33 chr6 183608427 183608737 -5670817 - MLT1A1 LTR MaLR -6 359 58 2138 145 0 0 chr6 183608737 183609047 -5670507 - AluSx SINE Alu -2 310 1 1540 242 8 33 chr6 183609047 183609099 -5670455 - MLT1A1 LTR MaLR -307 58 6 205 404 92 9 chr6 183611661 183611879 -5667675 - L2 LINE L2 -173 3099 2864 761 340 125 33 chr6 183613412 183614021 -5665533 + L2 LINE L2 1181 1917 -1397 243 0 0 0 chr6 183614021 183614048 -5665506 + (CA)n Simple_repeat Simple_repeat 2 28 0 761 340 125 33 chr6 183614048 183614429 -5665125 + L2 LINE L2 1917 2262 -1052 283 254 120 124 chr6 183614481 183614756 -5664798 + L2 LINE L2 3027 3300 -13 1307 171 40 126 chr6 183617693 183618090 -5661464 + MLT1A1 LTR MaLR 3 365 0 6059 205 109 37 chr6 183618090 183618277 -5661277 + MLT1A1-int LTR MaLR 1 173 -1562 1361 104 50 14 chr6 183618277 183618498 -5661056 - MER30 DNA MER1_type 0 230 2 6059 205 109 37 chr6 183618498 183619928 -5659626 + MLT1A1-int LTR MaLR 173 1735 0 1302 212 29 63 chr6 183619928 183620306 -5659248 + MLT1A1 LTR MaLR 1 365 0 314 293 95 58 chr6 183620346 183620385 -5659169 - L1ME4a LINE L1 -180 5941 5905 1086 197 5 0 chr6 183620385 183620593 -5658961 + MER6B DNA MER2_type 1 209 -1 314 293 95 58 chr6 183620593 183620795 -5658759 - L1ME4a LINE L1 -216 5905 5691 296 330 81 27 chr6 183621026 183621247 -5658307 - MLT1J LTR MaLR -266 245 13 449 100 0 0 chr6 183621327 183621397 -5658157 + MLT2B2 LTR ERVL 1 70 -445 246 317 75 19 chr6 183621548 183621709 -5657845 + L2 LINE L2 2142 2311 -1003 1004 117 49 31 chr6 183623459 183623621 -5655933 + AluSg/x SINE Alu 126 290 -22 1335 112 27 31 chr6 183623621 183623633 -5655921 - AluSg/x SINE Alu -21 291 280 796 103 0 0 chr6 183623633 183623749 -5655805 - L1MA3 LINE L1 -5 6300 6185 186 71 0 0 chr6 183623750 183623778 -5655776 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1335 112 27 31 chr6 183623778 183623986 -5655568 - AluSg/x SINE Alu -31 281 70 289 329 173 20 chr6 183625126 183625381 -5654173 + L2 LINE L2 2650 2943 -371 2372 90 6 3 chr6 183625680 183625992 -5653562 - AluSp SINE Alu 0 313 1 388 232 48 56 chr6 183626091 183626216 -5653338 + MER5A DNA MER1_type 3 126 -63 1245 115 0 0 chr6 183626217 183626382 -5653172 + AluSg/x SINE Alu 136 300 -10 319 250 42 0 chr6 183626387 183626459 -5653095 + MER5A DNA MER1_type 115 189 0 525 314 57 0 chr6 183626564 183626723 -5652831 + MIR SINE MIR 21 188 -74 684 323 61 37 chr6 183627770 183628067 -5651487 - L3 LINE CR1 -217 1360 1057 193 279 38 13 chr6 183628103 183628182 -5651372 - L3 LINE CR1 -659 918 838 553 331 23 6 chr6 183628435 183628610 -5650944 + MIR SINE MIR 14 191 -71 395 328 67 79 chr6 183628655 183629060 -5650494 + L2 LINE L2 2871 3270 -2 2298 83 3 7 chr6 183629221 183629522 -5650032 + AluY SINE Alu 1 300 -11 998 238 119 16 chr6 183629656 183630034 -5649520 + MLT1D LTR MaLR 89 505 0 377 318 79 44 chr6 183630050 183630659 -5648895 + L2 LINE L2 2636 3266 -47 1965 123 3 11 chr6 183632041 183632360 -5647194 + AluSx SINE Alu 1 317 0 2133 82 0 20 chr6 183632459 183632763 -5646791 - AluY SINE Alu -13 298 1 28 0 0 0 chr6 183633095 183633123 -5646431 + AT_rich Low_complexity Low_complexity 1 28 0 21 82 0 0 chr6 183633364 183633413 -5646141 + AT_rich Low_complexity Low_complexity 1 49 0 738 234 8 60 chr6 183633539 183633774 -5645780 - MLT2B1 LTR ERVL 0 520 298 494 280 32 8 chr6 183635475 183635600 -5643954 - L2 LINE L2 -1 3312 3185 305 322 86 39 chr6 183635619 183635852 -5643702 - L1M4 LINE L1 -1448 4698 4455 666 265 99 14 chr6 183636477 183636700 -5642854 - MIR SINE MIR -17 245 4 24 77 0 0 chr6 183637760 183637812 -5641742 + AT_rich Low_complexity Low_complexity 1 52 0 443 249 6 17 chr6 183637917 183638094 -5641460 + (TA)n Simple_repeat Simple_repeat 1 175 0 452 305 26 77 chr6 183639051 183639323 -5640231 + L1MCa LINE L1 925 1182 -5244 2619 123 44 0 chr6 183639470 183639878 -5639676 - L1P3 LINE L1 -6030 431 6 311 287 11 11 chr6 183640252 183640346 -5639208 + L2 LINE L2 3220 3313 0 368 261 46 15 chr6 183641971 183642101 -5637453 - Charlie1 DNA MER1_type 0 2761 2628 227 333 35 7 chr6 183642111 183642255 -5637299 - Charlie1 DNA MER1_type -2555 206 59 558 124 88 9 chr6 183642549 183642662 -5636892 - MLT2B1 LTR ERVL -398 122 1 5958 183 42 30 chr6 183642662 183643982 -5635572 - ERVL-B1 LTR ERVL -7 5757 4421 3724 199 3 0 chr6 183643979 183644658 -5634896 - ERVL-B1 LTR ERVL -3197 2567 1887 * 1998 237 11 31 chr6 183644666 183645143 -5634411 - ERVL-B1 LTR ERVL -5017 747 281 917 216 43 0 chr6 183645157 183645365 -5634189 + MER2 DNA MER2_type 1 217 -128 257 197 148 0 chr6 183645526 183645587 -5633967 - ERVL-B1 LTR ERVL -5593 171 102 889 215 136 94 chr6 183645590 183645662 -5633892 - MLT2B1 LTR ERVL -65 455 387 2266 116 7 0 chr6 183645662 183645972 -5633582 - AluSx SINE Alu 0 312 1 889 215 136 94 chr6 183645972 183646129 -5633425 - MLT2B1 LTR ERVL -133 387 238 183 42 0 0 chr6 183646129 183646153 -5633401 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 889 215 136 94 chr6 183646153 183646326 -5633228 - MLT2B1 LTR ERVL -282 238 35 1565 214 87 23 chr6 183647250 183647355 -5632199 + MER47B DNA MER2_type 1 98 -2225 2061 144 0 3 chr6 183647355 183647653 -5631901 + AluSx SINE Alu 1 297 -15 1565 214 87 23 chr6 183647653 183647940 -5631614 + MER47B DNA MER2_type 98 418 0 285 352 0 0 chr6 183648604 183648695 -5630859 + MIR SINE MIR 53 143 -119 714 269 55 16 chr6 183648795 183649048 -5630506 + MLT2B2 LTR ERVL 253 515 0 188 375 0 0 chr6 183649765 183649845 -5629709 + L2 LINE L2 3225 3304 -9 222 323 0 0 chr6 183650124 183650189 -5629365 + (TA)n Simple_repeat Simple_repeat 1 65 0 1997 166 0 40 chr6 183650330 183650656 -5628898 + MER47A DNA MER2_type 3 313 -2010 2003 161 0 0 chr6 183650656 183650955 -5628599 - AluJb SINE Alu -13 299 1 1997 166 0 40 chr6 183650955 183651007 -5628547 + MER47A DNA MER2_type 313 366 0 319 349 0 0 chr6 183652335 183652441 -5627113 + L2 LINE L2 3189 3294 -19 451 281 58 29 chr6 183652506 183652677 -5626877 - MIR SINE MIR -66 196 21 2165 127 7 0 chr6 183653078 183653385 -5626169 - AluSq SINE Alu -2 311 3 525 223 22 14 chr6 183654188 183654327 -5625227 + Tigger7 DNA MER2_type 8 147 -586 494 192 23 46 chr6 183654325 183654455 -5625099 + Tigger7 DNA MER2_type 2361 2487 0 * 2103 144 0 0 chr6 183654566 183654871 -5624683 - AluSq SINE Alu -8 305 1 313 188 0 0 chr6 183654931 183655000 -5624554 + MER3 DNA MER1_type 102 123 -86 567 334 129 6 chr6 183655670 183656020 -5623534 + L3 LINE CR1 420 812 -765 1239 244 104 29 chr6 183656717 183657417 -5622137 - L1M4 LINE L1 -1207 4939 4187 358 270 36 92 chr6 183657428 183657596 -5621958 + L1MCa LINE L1 1290 1447 -4979 2428 77 7 0 chr6 183657596 183657896 -5621658 + AluY SINE Alu 1 302 -9 358 270 36 92 chr6 183657896 183657923 -5621631 + L1MCa LINE L1 1447 1474 -4952 492 301 59 19 chr6 183657989 183658245 -5621309 - L1MEc LINE L1 -4769 1627 1362 187 379 0 0 chr6 183659518 183659576 -5619978 - MIR3 SINE MIR -36 172 115 2251 84 0 0 chr6 183660349 183660657 -5618897 + AluY SINE Alu 1 308 0 25 51 0 0 chr6 183661849 183661888 -5617666 + AT_rich Low_complexity Low_complexity 1 39 0 574 236 132 5 chr6 183662120 183662332 -5617222 - MER57A LTR ERV1 0 403 165 497 180 14 36 chr6 183662529 183662651 -5616903 - MER31-int LTR ERV1 0 7537 7038 354 48 32 16 chr6 183662684 183662746 -5616808 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 1001 88 0 7 chr6 183662746 183662893 -5616661 + (TTCC)n Simple_repeat Simple_repeat 4 149 0 1345 196 28 28 chr6 183662894 183663180 -5616374 - AluJo SINE Alu -14 298 13 472 316 7 0 chr6 183663508 183663660 -5615894 - MER70-int LTR ERVL -364 4659 4507 2050 155 47 8 chr6 183663728 183664089 -5615465 + THE1C LTR MaLR 1 375 0 7447 37 0 0 chr6 183664114 183665037 -5614517 - L1PA4 LINE L1 -2154 3992 3070 11702 33 2 0 chr6 183665037 183667215 -5612339 + L1PA4 LINE L1 3985 6165 0 24 0 0 0 chr6 183667224 183667248 -5612306 + AT_rich Low_complexity Low_complexity 1 24 0 533 287 6 40 chr6 183667980 183668154 -5611400 - MER31-int LTR ERV1 -1358 6179 6012 414 289 0 22 chr6 183668266 183668401 -5611153 - MER31-int LTR ERV1 -1581 5956 5825 315 295 19 19 chr6 183668481 183668586 -5610968 - MER31-int LTR ERV1 -1961 4840 4736 2284 218 30 42 chr6 183668742 183669367 -5610187 - MER31-int LTR ERV1 -1716 5821 5204 2105 239 72 82 chr6 183669367 183670569 -5608985 - MER31-int LTR ERV1 -1884 3052 1862 574 173 10 0 chr6 183670636 183670740 -5608814 - MER34 LTR ERV1 -305 237 133 650 281 44 38 chr6 183670791 183671108 -5608446 + L1ME3 LINE L1 2459 2777 -3369 26 30 0 0 chr6 183671369 183671402 -5608152 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr6 183671928 183671955 -5607599 + AT_rich Low_complexity Low_complexity 1 27 0 1874 267 67 26 chr6 183672035 183672736 -5606818 + L1ME3 LINE L1 5433 6162 0 1958 146 39 41 chr6 183674102 183674464 -5605090 - THE1B LTR MaLR -3 361 1 9373 115 51 48 chr6 183674464 183676040 -5603514 - THE1B-int LTR MaLR 0 1580 1 1998 151 21 30 chr6 183676040 183676378 -5603176 - THE1B LTR MaLR 0 364 30 1646 183 10 10 chr6 183676629 183676848 -5602706 - MSTA LTR MaLR -2 426 205 1674 173 130 41 chr6 183676848 183677241 -5602313 - MSTA LTR MaLR 0 428 1 1646 183 10 10 chr6 183677241 183677316 -5602238 - MSTA LTR MaLR -222 206 132 29351 125 8 28 chr6 183677330 183682741 -5596813 - L1P3 LINE L1 -642 5827 434 453 289 64 14 chr6 183732789 183733069 -5546485 - L1M4 LINE L1 -2095 4051 3758 22 0 0 0 chr6 183733146 183733168 -5546386 + AT_rich Low_complexity Low_complexity 1 22 0 370 269 120 37 chr6 183733188 183733430 -5546124 - L1ME LINE L1 -326 5795 5534 39 60 0 0 chr6 183733658 183733725 -5545829 + AT_rich Low_complexity Low_complexity 1 67 0 789 167 68 0 chr6 183735500 183735662 -5543892 - MER2 DNA MER2_type -1 344 172 1935 149 7 0 chr6 183736150 183736438 -5543116 + AluSx SINE Alu 1 290 -22 207 186 0 0 chr6 183736440 183736483 -5543071 + (TA)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr6 183737028 183737052 -5542502 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr6 183737188 183737214 -5542340 + AT_rich Low_complexity Low_complexity 1 26 0 296 284 22 93 chr6 183737933 183738116 -5541438 - MIR SINE MIR -73 189 20 210 369 12 0 chr6 183738164 183738248 -5541306 - MIR SINE MIR -91 171 87 2338 104 0 7 chr6 183738609 183738918 -5540636 - AluSg SINE Alu -3 307 1 22 0 0 0 chr6 183739767 183739789 -5539765 + AT_rich Low_complexity Low_complexity 1 22 0 318 129 0 0 chr6 183740725 183740787 -5538767 + (CCCTG)n Simple_repeat Simple_repeat 3 64 0 253 96 0 39 chr6 183740887 183740939 -5538615 + (TCCCC)n Simple_repeat Simple_repeat 4 53 0 200 259 17 0 chr6 183741020 183741078 -5538476 + (TG)n Simple_repeat Simple_repeat 2 60 0 3049 196 25 14 chr6 183741893 183742529 -5537025 - MER73 LTR ERVL 0 644 2 309 239 108 15 chr6 183744580 183744710 -5534844 - MLT1J1 LTR MaLR -284 162 21 2780 79 0 0 chr6 183746799 183747154 -5532400 + THE1A LTR MaLR 1 355 0 7640 20 25 0 chr6 183747511 183748819 -5530735 - L1PA4 LINE L1 -1 6154 4831 4475 30 0 0 chr6 183748819 183749381 -5530173 + L1PA4 LINE L1 4261 4822 -1324 372 255 20 20 chr6 183749416 183749518 -5530036 - MIR SINE MIR 0 262 161 1445 180 35 21 chr6 183749522 183749811 -5529743 + MLT1A1 LTR MaLR 60 352 -13 230 313 39 23 chr6 183750118 183750246 -5529308 + L3 LINE CR1 738 867 -710 2453 126 13 5 chr6 183750333 183750705 -5528849 - THE1C LTR MaLR 0 375 1 1985 127 9 12 chr6 183750705 183751037 -5528517 - THE1C-int LTR MaLR 0 1580 1250 896 148 0 13 chr6 183751012 183751161 -5528393 - THE1C-int LTR MaLR -1244 336 190 * 1282 99 0 173 chr6 183751161 183751473 -5528081 - THE1C-int LTR MaLR -1320 260 3 2242 148 8 5 chr6 183751475 183751848 -5527706 - THE1C LTR MaLR 0 375 2 437 303 41 9 chr6 183751970 183752188 -5527366 - L1M4 LINE L1 -1164 4982 4758 877 247 89 52 chr6 183752477 183752915 -5526639 - MLT1E3 LTR MaLR -109 515 62 2061 164 55 17 chr6 183753240 183753642 -5525912 + MSTA LTR MaLR 1 417 -11 8688 179 36 2 chr6 183753652 183755250 -5524304 + MSTA-int LTR MaLR 1 1651 0 2028 179 48 31 chr6 183755250 183755619 -5523935 + MSTA LTR MaLR 1 379 -49 2156 147 8 22 chr6 183755619 183755986 -5523568 + THE1B LTR MaLR 1 362 -2 2028 179 48 31 chr6 183755986 183756036 -5523518 + MSTA LTR MaLR 379 427 -1 189 0 0 0 chr6 183756324 183756345 -5523209 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 5789 100 11 17 chr6 183756345 183757393 -5522161 - L1PA10 LINE L1 -21 6147 5106 208 391 69 32 chr6 183758394 183758829 -5520725 + L2 LINE L2 2299 2749 -565 294 346 103 0 chr6 183759246 183759382 -5520172 - MIR SINE MIR -59 203 54 2451 119 19 8 chr6 183759437 183759808 -5519746 + THE1C LTR MaLR 1 375 0 7967 115 14 73 chr6 183759810 183761241 -5518313 + THE1C-int LTR MaLR 2 1348 -232 1228 139 11 0 chr6 183761342 183761529 -5518025 + THE1C LTR MaLR 187 375 0 2830 10 0 0 chr6 183761687 183761995 -5517559 + AluY SINE Alu 1 308 -3 2491 312 146 31 chr6 183762191 183762435 -5517119 - L2 LINE L2 -45 3268 3053 1742 209 89 45 chr6 183762435 183762919 -5516635 - MLT1D LTR MaLR 0 505 1 2491 312 146 31 chr6 183762919 183764627 -5514927 - L2 LINE L2 -260 3053 1089 22 0 0 0 chr6 183764947 183764969 -5514585 + AT_rich Low_complexity Low_complexity 1 22 0 428 335 14 64 chr6 183768152 183768433 -5511121 - L2 LINE L2 -760 2554 2288 347 311 53 0 chr6 183768709 183768841 -5510713 + MIR SINE MIR 107 245 -17 2407 73 0 0 chr6 183769125 183769426 -5510128 + AluY SINE Alu 1 301 -10 182 281 87 87 chr6 183771057 183771242 -5508312 + L2 LINE L2 2453 2637 -677 21 0 0 0 chr6 183771349 183771370 -5508184 + AT_rich Low_complexity Low_complexity 1 21 0 3857 159 40 3 chr6 183771370 183772044 -5507510 + L1PA15 LINE L1 5467 6165 0 2054 125 3 0 chr6 183772536 183772824 -5506730 - AluSg SINE Alu -21 289 1 3373 114 10 14 chr6 183773368 183773414 -5506140 - MER75 DNA T2_type -6 508 463 507 101 13 0 chr6 183773414 183773493 -5506061 + MADE1 DNA Mariner 1 80 0 3373 114 10 14 chr6 183773493 183773956 -5505598 - MER75 DNA T2_type -51 463 1 1342 244 98 46 chr6 183774606 183774762 -5504792 - MLT1D LTR MaLR 0 505 359 3516 106 31 19 chr6 183774762 183775283 -5504271 + MER1A DNA MER1_type 1 527 0 1342 244 98 46 chr6 183775283 183775606 -5503948 - MLT1D LTR MaLR -146 359 1 29 90 0 0 chr6 183775691 183775769 -5503785 + AT_rich Low_complexity Low_complexity 1 78 0 400 134 37 0 chr6 183776114 183776196 -5503358 + CT-rich Low_complexity Low_complexity 4 88 0 25 0 0 0 chr6 183776231 183776256 -5503298 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr6 183776309 183776334 -5503220 + AT_rich Low_complexity Low_complexity 1 25 0 519 294 40 6 chr6 183776424 183776601 -5502953 - MLT1L LTR MaLR -2 613 431 375 270 40 16 chr6 183777762 183777888 -5501666 - MLT1I LTR MaLR -25 384 256 251 298 21 21 chr6 183778009 183778103 -5501451 - MLT1I LTR MaLR -313 96 3 325 339 47 21 chr6 183778134 183778370 -5501184 + L1ME4a LINE L1 5724 5965 -156 2326 95 0 3 chr6 183778836 183779131 -5500423 - AluSp SINE Alu -19 294 1 369 366 75 36 chr6 183779153 183779434 -5500120 + L1MEc LINE L1 49 340 -6056 877 265 80 34 chr6 183779837 183780590 -5498964 + L1MEc LINE L1 661 1452 -4763 634 287 18 3 chr6 183780623 183780830 -5498724 + L1PBa LINE L1 1594 1993 -4223 184 352 23 23 chr6 183780845 183780933 -5498621 - MIR SINE MIR -103 105 18 26 0 0 0 chr6 183781612 183781638 -5497916 + AT_rich Low_complexity Low_complexity 1 26 0 386 302 57 44 chr6 183781735 183782425 -5497129 + L1ME LINE L1 4905 5610 -552 338 301 111 52 chr6 183782517 183782923 -5496631 + L1MEc LINE L1 2335 2764 -3451 2148 92 34 15 chr6 183782927 183783253 -5496301 + LTR43 LTR ERV1 228 559 -43 5249 96 0 3 chr6 183783280 183784002 -5495552 - L1PA8A LINE L1 -28 6103 5384 * 9309 120 1 0 chr6 183783999 183785392 -5494162 + L1P LINE L1 3756 5149 -997 540 111 0 0 chr6 183785392 183785464 -5494090 + LTR43 LTR ERV1 531 602 0 216 0 0 0 chr6 183786022 183786046 -5493508 + (A)n Simple_repeat Simple_repeat 1 24 0 2032 125 0 7 chr6 183786457 183786772 -5492782 + AluSx SINE Alu 6 318 0 21 57 0 0 chr6 183787616 183787651 -5491903 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr6 183787768 183787799 -5491755 + AT_rich Low_complexity Low_complexity 1 31 0 268 253 25 13 chr6 183788100 183788179 -5491375 - MIR SINE MIR -102 160 81 1235 200 25 29 chr6 183790693 183790973 -5488581 - MLT1B LTR MaLR 0 390 112 406 216 86 26 chr6 183791025 183791141 -5488413 - MLT1B LTR MaLR -267 123 1 268 295 36 27 chr6 183791141 183791253 -5488301 - MIR SINE MIR -103 159 47 2158 242 51 15 chr6 183791578 183792164 -5487390 - L1ME1 LINE L1 -40 6921 6315 705 233 5 19 chr6 183792225 183792431 -5487123 - L1MC4a LINE L1 -234 7574 7372 2273 68 11 4 chr6 183792623 183792929 -5486625 - AluY SINE Alu 0 308 1 1608 248 26 20 chr6 183793001 183793470 -5486084 - L1MD2 LINE L1 -64 7920 6194 3858 271 47 16 chr6 183793559 183795106 -5484448 - L1ME1 LINE L1 -1037 5904 4310 346 307 84 22 chr6 183795107 183795286 -5484268 - L1ME1 LINE L1 -5365 1058 869 1370 165 12 28 chr6 183795296 183795551 -5484003 + THE1C LTR MaLR 125 375 0 9034 131 73 9 chr6 183795551 183797036 -5482518 + THE1C-int LTR MaLR 1 1580 0 2229 138 16 24 chr6 183797036 183797414 -5482140 + THE1C LTR MaLR 1 375 0 40 0 0 0 chr6 183797695 183797735 -5481819 + AT_rich Low_complexity Low_complexity 1 40 0 250 370 148 0 chr6 183799872 183799980 -5479574 + L2 LINE L2 3149 3272 0 242 314 51 0 chr6 183800739 183800857 -5478697 + MIR SINE MIR 128 251 -11 23 0 0 0 chr6 183801046 183801069 -5478485 + AT_rich Low_complexity Low_complexity 1 23 0 231 189 0 0 chr6 183801755 183801808 -5477746 + CT-rich Low_complexity Low_complexity 2 54 0 1067 178 84 93 chr6 183802007 183802362 -5477192 + MER57A LTR ERV1 42 393 -10 2500 87 0 89 chr6 183802837 183803251 -5476303 - MER51B LTR ERV1 0 377 1 1589 169 14 49 chr6 183803890 183804158 -5475396 + MER67D LTR ERV1 4 259 -255 2363 145 41 14 chr6 183804158 183804573 -5474981 - MSTB LTR MaLR 0 426 1 1589 169 14 49 chr6 183804573 183804653 -5474901 + MER67D LTR ERV1 259 340 -174 32 67 0 0 chr6 183805569 183805629 -5473925 + AT_rich Low_complexity Low_complexity 1 60 0 5572 97 71 24 chr6 183805629 183806289 -5473265 - L1PA13 LINE L1 -4 6159 5442 2368 97 0 6 chr6 183806289 183806600 -5472954 - AluSc SINE Alu 0 309 1 5572 97 71 24 chr6 183806600 183806841 -5472713 - L1PA13 LINE L1 -721 5442 5214 1750 144 13 0 chr6 183806837 183807135 -5472419 + L1P LINE L1 4972 5273 -873 * 2947 141 41 49 chr6 183808110 183808539 -5471015 - MER1A DNA MER1_type -2173 527 100 1829 127 67 0 chr6 183808539 183808839 -5470715 + AluSp SINE Alu 1 318 0 2947 141 41 49 chr6 183808839 183808939 -5470615 - MER1A DNA MER1_type -2600 100 1 3459 218 27 15 chr6 183809474 183810286 -5469268 - L1MB8 LINE L1 0 6178 5357 343 343 88 17 chr6 183810882 183811121 -5468433 - MIR SINE MIR -6 256 1 2280 78 7 10 chr6 183811411 183811717 -5467837 - AluY SINE Alu -6 305 1 205 260 15 155 chr6 183811983 183812100 -5467454 + MIR SINE MIR 13 145 -117 1719 168 10 19 chr6 183812100 183812409 -5467145 + AluSx SINE Alu 2 307 -5 205 260 15 155 chr6 183812409 183812457 -5467097 + MIR SINE MIR 145 148 -114 2374 86 0 0 chr6 183812457 183812749 -5466805 + AluY SINE Alu 1 292 -19 205 260 15 155 chr6 183812749 183812782 -5466772 + MIR SINE MIR 148 184 -78 2140 117 0 40 chr6 183813755 183814079 -5465475 - AluSx SINE Alu -1 311 1 270 340 39 46 chr6 183814120 183814273 -5465281 - MIR3 SINE MIR -21 187 36 197 139 23 0 chr6 183814439 183814482 -5465072 + (TA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr6 183814528 183814550 -5465004 + AT_rich Low_complexity Low_complexity 1 22 0 228 303 101 8 chr6 183814613 183814732 -5464822 + L3 LINE CR1 783 912 -665 2275 108 19 34 chr6 183814785 183815164 -5464390 - THE1C LTR MaLR 0 375 3 9948 128 7 30 chr6 183815166 183816784 -5462770 - THE1C-int LTR MaLR 0 1580 1 805 139 8 0 chr6 183816784 183816906 -5462648 - THE1C LTR MaLR 0 375 253 209 340 152 35 chr6 183817874 183818250 -5461304 + L2 LINE L2 1638 2057 -1257 1778 303 186 13 chr6 183819100 183820270 -5459284 - L2 LINE L2 -749 2565 1193 438 338 57 6 chr6 183820683 183820840 -5458714 + MIR SINE MIR 32 196 -66 301 208 66 28 chr6 183820955 183821061 -5458493 + L1MEc LINE L1 94 203 -6193 1302 253 117 16 chr6 183822480 183822907 -5456647 + L1MD1 LINE L1 8 477 -6063 * 5324 236 58 13 chr6 183822900 183825000 -5454554 + L1MD1 LINE L1 3680 5936 -700 221 0 35 0 chr6 183825000 183825029 -5454525 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5324 236 58 13 chr6 183825029 183825756 -5453798 + L1MD1 LINE L1 5936 6629 -7 219 352 28 0 chr6 183825880 183825951 -5453603 + MIR SINE MIR 20 92 -170 241 229 0 57 chr6 183827945 183828015 -5451539 - L1ME LINE L1 -543 5578 5513 200 189 0 38 chr6 183828065 183828118 -5451436 + T-rich Low_complexity Low_complexity 5 55 0 36 0 0 0 chr6 183828193 183828229 -5451325 + AT_rich Low_complexity Low_complexity 1 36 0 372 333 91 29 chr6 183828456 183828873 -5450681 - L1ME LINE L1 -768 5378 4936 620 306 78 38 chr6 183829125 183829521 -5450033 - LTR33 LTR ERVL -57 464 53 24 67 0 0 chr6 183829600 183829645 -5449909 + AT_rich Low_complexity Low_complexity 1 45 0 184 53 53 26 chr6 183830863 183830901 -5448653 + A-rich Low_complexity Low_complexity 1 39 0 487 316 99 34 chr6 183832325 183832395 -5447159 + L1MC4a LINE L1 4027 4091 -2055 1946 133 46 27 chr6 183832395 183832763 -5446791 - THE1C LTR MaLR 0 375 1 487 316 99 34 chr6 183832763 183833075 -5446479 + L1MC4a LINE L1 4091 4434 -1712 778 207 17 35 chr6 183833562 183833736 -5445818 - MER45A DNA AcHobo -7 171 1 460 368 94 24 chr6 183834035 183834608 -5444946 + L1MC4a LINE L1 5306 5918 -1890 1073 245 129 16 chr6 183835326 183835714 -5443840 - LTR50 LTR ERVL -19 776 345 450 0 0 0 chr6 183836099 183836149 -5443405 + (TA)n Simple_repeat Simple_repeat 2 51 0 1304 193 17 61 chr6 183836149 183836444 -5443110 - AluJb SINE Alu -30 282 1 397 312 8 16 chr6 183836577 183836702 -5442852 - L2 LINE L2 -1 3312 3189 2128 110 7 0 chr6 183836854 183837162 -5442392 + AluSq SINE Alu 4 313 0 935 210 16 37 chr6 183837526 183837769 -5441785 + AluJo SINE Alu 66 303 -9 367 319 52 75 chr6 183837901 183838340 -5441214 + L1MEd LINE L1 595 1023 -5096 271 282 9 18 chr6 183838370 183838480 -5441074 + L1MEd LINE L1 1139 1247 -5063 25 75 0 0 chr6 183838858 183838911 -5440643 + AT_rich Low_complexity Low_complexity 1 53 0 833 292 102 43 chr6 183838984 183840107 -5439447 + L1MEd LINE L1 2093 3282 -2847 1235 247 209 36 chr6 183840240 183840767 -5438787 + MLT1E2 LTR MaLR 3 620 -6 239 203 16 0 chr6 183840768 183840832 -5438722 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 252 86 0 0 chr6 183840833 183840910 -5438644 + (TATG)n Simple_repeat Simple_repeat 1 112 0 252 86 0 0 chr6 183840910 183840945 -5438609 + (TATG)n Simple_repeat Simple_repeat 2 36 0 236 197 0 14 chr6 183841020 183841091 -5438463 + (CATA)n Simple_repeat Simple_repeat 3 72 0 619 298 65 38 chr6 183841192 183841696 -5437858 + L1MEd LINE L1 3653 4170 -1959 585 194 14 21 chr6 183841734 183841878 -5437676 - L1M4 LINE L1 -913 5233 5091 453 287 73 0 chr6 183841943 183842093 -5437461 - MIR SINE MIR -100 162 2 3192 124 16 26 chr6 183842459 183843024 -5436530 - L1MA4A LINE L1 -5 6298 5740 2090 139 81 15 chr6 183843026 183843645 -5435909 + L1MA4A LINE L1 5057 5713 -590 260 136 0 0 chr6 183845396 183845440 -5434114 + MER41B LTR ERV1 592 635 0 561 156 11 0 chr6 183845441 183845531 -5434023 + MER41B-int LTR ERV1 1 91 -5855 402 68 41 55 chr6 183845528 183845601 -5433953 + MER41-int LTR ERV1 3828 3899 -2047 * 435 116 0 14 chr6 183845593 183845662 -5433892 + MER41-int LTR ERV1 4643 4710 -1236 655 202 8 0 chr6 183845752 183845871 -5433683 + FLAM_A SINE Alu 1 120 -13 284 356 106 35 chr6 183846353 183846665 -5432889 + L3 LINE CR1 1093 1426 -151 243 0 0 0 chr6 183846955 183846982 -5432572 + (TG)n Simple_repeat Simple_repeat 1 27 0 325 313 0 0 chr6 183849006 183849102 -5430452 + MER5A DNA MER1_type 11 106 -83 327 49 0 0 chr6 183849183 183849224 -5430330 + (CA)n Simple_repeat Simple_repeat 2 42 0 2610 248 65 28 chr6 183849245 183850802 -5428752 - L1ME1 LINE L1 -5 6161 4551 651 215 59 78 chr6 183850802 183851058 -5428496 + MLT1A1 LTR MaLR 1 251 -114 803 241 40 58 chr6 183851277 183851605 -5427949 + MLT1A1 LTR MaLR 44 365 0 533 242 80 15 chr6 183851607 183851871 -5427683 - L1ME1 LINE L1 -1593 4553 4273 804 115 0 0 chr6 183851871 183851993 -5427561 + (TCCCC)n Simple_repeat Simple_repeat 1 122 0 299 141 156 0 chr6 183851995 183852059 -5427495 - FLAM SINE Alu -20 113 40 314 292 62 0 chr6 183852071 183852215 -5427339 - L1ME1 LINE L1 -1877 4269 4117 325 192 64 13 chr6 183852219 183852297 -5427257 + L1M4 LINE L1 3107 3188 -2958 826 190 80 147 chr6 183852531 183852920 -5426634 + MLT1A1 LTR MaLR 3 365 0 25 0 0 0 chr6 183853337 183853362 -5426192 + AT_rich Low_complexity Low_complexity 1 25 0 641 366 123 6 chr6 183853413 183853885 -5425669 + L2 LINE L2 1712 2238 -1076 184 342 38 0 chr6 183853969 183854048 -5425506 + L2 LINE L2 2380 2461 -853 207 264 0 0 chr6 183857087 183857140 -5422414 + A-rich Low_complexity Low_complexity 5 57 0 33 90 0 0 chr6 183857619 183857708 -5421846 + AT_rich Low_complexity Low_complexity 1 89 0 1525 211 11 99 chr6 183858322 183858776 -5420778 - MLT2D LTR ERVL 0 414 1 239 321 0 12 chr6 183859249 183859330 -5420224 + HAL1b LINE L1 388 467 -881 29 0 0 0 chr6 183859525 183859554 -5420000 + AT_rich Low_complexity Low_complexity 1 29 0 708 324 89 63 chr6 183861025 183861849 -5417705 + HAL1b LINE L1 1 845 -503 2030 147 0 0 chr6 183862008 183862300 -5417254 + AluSx SINE Alu 1 292 -20 447 159 53 0 chr6 183862346 183862516 -5417038 + (TA)n Simple_repeat Simple_repeat 2 180 0 210 246 0 16 chr6 183862521 183862582 -5416972 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 608 97 27 38 chr6 183862583 183862813 -5416741 + (TA)n Simple_repeat Simple_repeat 1 227 0 37 23 0 0 chr6 183862773 183862817 -5416737 + AT_rich Low_complexity Low_complexity 1 44 0 * 31 26 0 0 chr6 183862929 183862967 -5416587 + AT_rich Low_complexity Low_complexity 1 38 0 818 64 72 31 chr6 183862981 183863422 -5416132 + (TATAA)n Simple_repeat Simple_repeat 1 458 0 336 209 38 0 chr6 183863422 183863527 -5416027 + (TA)n Simple_repeat Simple_repeat 2 110 0 1411 292 82 32 chr6 183863528 183864001 -5415553 + MLT1E LTR MaLR 2 498 -95 444 291 104 72 chr6 183864063 183864600 -5414954 + L1MC5 LINE L1 6637 7153 -808 21 36 0 0 chr6 183865827 183865855 -5413699 + AT_rich Low_complexity Low_complexity 1 28 0 231 234 16 0 chr6 183866699 183866763 -5412791 + MLT1I LTR MaLR 344 408 -1 1986 133 0 3 chr6 183867007 183867300 -5412254 + AluSg SINE Alu 1 292 -18 27 0 0 0 chr6 183867300 183867327 -5412227 + AT_rich Low_complexity Low_complexity 1 27 0 203 269 228 42 chr6 183867734 183867901 -5411653 + MIR SINE MIR 63 260 -2 2012 114 14 0 chr6 183867901 183868215 -5411339 - AluSx SINE Alu 0 318 1 1655 208 60 17 chr6 183868228 183868646 -5410908 - L1MA9 LINE L1 0 6312 5877 1100 224 18 18 chr6 183868648 183868929 -5410625 - L1 LINE L1 -2147 5020 4740 876 266 112 24 chr6 183868928 183869544 -5410010 - L1 LINE L1 -4042 3125 2456 * 378 188 0 0 chr6 183869568 183869632 -5409922 + Tigger4(Zombi) DNA MER2_type 2 65 -2666 1978 234 17 4 chr6 183869637 183870176 -5409378 - L1 LINE L1 -4640 2458 1913 432 300 46 105 chr6 183870497 183870953 -5408601 - L1 LINE L1 -6734 434 6 306 262 171 43 chr6 183871922 183872109 -5407445 + L1 LINE L1 4832 5042 -1104 2815 282 73 29 chr6 183872111 183873857 -5405697 + L1M4 LINE L1 3052 4875 -1271 259 194 15 15 chr6 183873911 183873978 -5405576 + L1M4 LINE L1 4864 4930 -1216 1986 167 75 3 chr6 183874062 183874433 -5405121 - L1PA15 LINE L1 -24 6141 5744 425 240 10 0 chr6 183874437 183874537 -5405017 + L1ME2 LINE L1 6012 6112 -52 198 171 0 0 chr6 183874548 183874589 -5404965 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 239 281 12 49 chr6 183874710 183874792 -5404762 - MLT1-int LTR MaLR -506 865 787 1392 118 5 24 chr6 183876492 183876726 -5402828 - AluSp SINE Alu 0 313 90 2215 57 7 0 chr6 183876759 183877038 -5402516 - AluY SINE Alu 0 311 31 210 191 0 0 chr6 183877280 183877327 -5402227 + CT-rich Low_complexity Low_complexity 3 49 0 21 0 0 0 chr6 183877447 183877468 -5402086 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 183877505 183877532 -5402022 + AT_rich Low_complexity Low_complexity 1 27 0 634 267 27 65 chr6 183877532 183877824 -5401730 - L1ME2 LINE L1 -9 6155 5875 1346 205 18 42 chr6 183877838 183878170 -5401384 - L1MCa LINE L1 -6101 325 2 502 253 38 86 chr6 183878178 183878597 -5400957 - L1MEc LINE L1 -3615 2600 2202 275 301 23 15 chr6 183878609 183878742 -5400812 - L1MEc LINE L1 -4237 2159 2026 356 276 78 35 chr6 183878882 183879114 -5400440 - L1MEc LINE L1 -4614 1782 1541 1930 188 14 11 chr6 183880559 183880920 -5398634 + MLT1A1 LTR MaLR 4 365 0 253 352 148 0 chr6 183881056 183881164 -5398390 + L2 LINE L2 3149 3272 0 880 306 170 2 chr6 183881910 183882322 -5397232 + MER115 DNA AcHobo 160 640 -53 21 57 0 0 chr6 183882327 183882362 -5397192 + AT_rich Low_complexity Low_complexity 1 35 0 4401 216 27 8 chr6 183882395 183883919 -5395635 + L1M2 LINE L1 2460 4013 -2835 1166 133 0 0 chr6 183884160 183884326 -5395228 - AluSg/x SINE Alu -12 298 133 453 19 0 0 chr6 183884327 183884381 -5395173 + (TA)n Simple_repeat Simple_repeat 1 54 0 2004 132 7 7 chr6 183884847 183885151 -5394403 + AluSx SINE Alu 7 310 -2 1424 230 31 11 chr6 183885429 183885764 -5393790 - MLT1D LTR MaLR -1 504 188 225 65 0 0 chr6 183885975 183886006 -5393548 + (TTA)n Simple_repeat Simple_repeat 2 32 0 2148 259 71 21 chr6 183886067 183886786 -5392768 - L1ME1 LINE L1 -5 6161 5407 1686 252 102 34 chr6 183886786 183887316 -5392238 + L1M2 LINE L1 4669 5272 -1576 1030 66 7 0 chr6 183887316 183887452 -5392102 + L1PA10 LINE L1 6027 6163 -5 1686 252 102 34 chr6 183887452 183887716 -5391838 + L1M2 LINE L1 5272 5517 -1331 1594 225 143 23 chr6 183887721 183888289 -5391265 - MER92B LTR ERV1 0 636 1 2300 55 0 52 chr6 183888314 183888623 -5390931 + AluY SINE Alu 17 309 -2 1321 248 36 42 chr6 183888652 183889493 -5390061 + L1M2 LINE L1 5551 6389 -672 1874 194 76 62 chr6 183889532 183889873 -5389681 + L1MB8 LINE L1 5602 5956 -222 898 131 0 29 chr6 183889873 183890010 -5389544 - FLAM_C SINE Alu 0 133 1 1874 194 76 62 chr6 183890010 183890235 -5389319 + L1MB8 LINE L1 5956 6176 -2 300 327 9 0 chr6 183890236 183890343 -5389211 + L1MD2 LINE L1 5897 6004 -355 583 211 53 0 chr6 183890354 183890506 -5389048 + L1MD3 LINE L1 7828 7987 -8 3113 146 6 10 chr6 183892095 183892594 -5386960 - LOR1a LTR ERV1 0 497 1 240 304 134 9 chr6 183892806 183892918 -5386636 + L2 LINE L2 3144 3269 -3 29 28 0 0 chr6 183892946 183892982 -5386572 + AT_rich Low_complexity Low_complexity 1 36 0 209 383 17 17 chr6 183893465 183893585 -5385969 - L2 LINE L2 -466 2848 2729 1371 287 107 37 chr6 183893596 183894438 -5385116 - L1MEc LINE L1 -2220 3995 3095 301 257 62 9 chr6 183894581 183894694 -5384860 - L1MEc LINE L1 -4616 1780 1662 2876 293 91 20 chr6 183894824 183896349 -5383205 - L1MEc LINE L1 -4724 1672 39 192 71 0 0 chr6 183896899 183896927 -5382627 + MER5C DNA MER1_type 103 130 -194 1941 139 7 0 chr6 183898120 183898408 -5381146 + AluSx SINE Alu 1 290 -22 1812 166 11 23 chr6 183898422 183898772 -5380782 - THE1C LTR MaLR -29 346 1 233 247 27 14 chr6 183899748 183899821 -5379733 - tRNA-Ile-ATT tRNA tRNA -3 74 1 21 0 0 0 chr6 183899902 183899923 -5379631 + AT_rich Low_complexity Low_complexity 1 21 0 303 191 0 0 chr6 183900843 183900911 -5378643 + (TA)n Simple_repeat Simple_repeat 2 69 0 3545 258 139 41 chr6 183901017 183903184 -5376370 + L1M4 LINE L1 2568 4948 -1198 213 65 0 0 chr6 183903184 183903215 -5376339 + (A)n Simple_repeat Simple_repeat 1 31 0 1988 114 7 36 chr6 183903216 183903523 -5376031 + AluSx SINE Alu 1 298 -14 458 263 89 36 chr6 183904009 183904313 -5375241 + L1M4 LINE L1 5082 5401 -745 355 286 8 17 chr6 183904387 183904506 -5375048 + L1ME2 LINE L1 6041 6158 -6 313 293 27 86 chr6 183904536 183904758 -5374796 + L1MC4 LINE L1 7829 8037 -5 733 206 78 0 chr6 183905454 183905634 -5373920 - L1ME1 LINE L1 -336 5830 5637 905 283 83 37 chr6 183905646 183905788 -5373766 - L1M4 LINE L1 -2155 3991 3857 2441 53 0 3 chr6 183905788 183906091 -5373463 - AluY SINE Alu -9 302 1 905 283 83 37 chr6 183906091 183906626 -5372928 - L1M4 LINE L1 -2289 3857 3283 338 249 97 27 chr6 183906625 183906810 -5372744 - L1M4 LINE L1 -3180 2966 2769 * 229 23 0 91 chr6 183906866 183906910 -5372644 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 296 348 0 0 chr6 183907251 183907340 -5372214 + CT-rich Low_complexity Low_complexity 1 89 0 329 0 24 0 chr6 183907434 183907475 -5372079 + (CA)n Simple_repeat Simple_repeat 2 43 0 1700 163 42 7 chr6 183908224 183908507 -5371047 + AluJb SINE Alu 1 293 -19 216 0 0 0 chr6 183909033 183909057 -5370497 + (T)n Simple_repeat Simple_repeat 1 24 0 2385 55 3 3 chr6 183909197 183909487 -5370067 - AluY SINE Alu -10 301 12 963 263 51 6 chr6 183911153 183911469 -5368085 + L1ME3 LINE L1 2629 2958 -3188 282 172 20 30 chr6 183911647 183911746 -5367808 + (TTA)n Simple_repeat Simple_repeat 2 99 0 300 315 45 0 chr6 183912220 183912309 -5367245 - L3 LINE CR1 -115 1462 1370 23 33 0 0 chr6 183913315 183913345 -5366209 + AT_rich Low_complexity Low_complexity 1 30 0 219 295 39 0 chr6 183914403 183914481 -5365073 + L2 LINE L2 2872 2952 -320 181 258 103 113 chr6 183916007 183916309 -5363245 + L2 LINE L2 1256 1554 -1760 327 308 46 31 chr6 183916669 183916864 -5362690 + L1ME3 LINE L1 4156 4353 -1793 39 60 0 0 chr6 183916864 183916931 -5362623 + AT_rich Low_complexity Low_complexity 1 67 0 567 279 92 35 chr6 183917001 183917434 -5362120 + L1ME3 LINE L1 4454 4911 -1235 261 0 0 0 chr6 183917462 183917491 -5362063 + (GA)n Simple_repeat Simple_repeat 2 30 0 1313 284 33 11 chr6 183917492 183918130 -5361424 + L1ME3 LINE L1 5359 6010 -152 442 348 69 24 chr6 183918338 183918758 -5360796 + L2 LINE L2 1698 2136 -1178 2185 113 10 6 chr6 183918889 183919200 -5360354 - AluSq SINE Alu -1 312 1 695 299 82 37 chr6 183919204 183919606 -5359948 - L1MEc LINE L1 -4129 2267 1848 400 324 59 17 chr6 183919655 183920013 -5359541 - L1MEc LINE L1 -4955 1441 1069 32 43 0 0 chr6 183920109 183920155 -5359399 + AT_rich Low_complexity Low_complexity 1 46 0 1582 205 16 35 chr6 183920295 183920729 -5358825 - L1MB7 LINE L1 -11 6173 5748 550 213 37 0 chr6 183921527 183921663 -5357891 - L1MA8 LINE L1 -5 6286 6146 262 44 22 22 chr6 183922382 183922427 -5357127 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 40291 55 13 1 chr6 183922427 183928478 -5351076 - L1PA3 LINE L1 -24 6131 7 2132 169 54 11 chr6 183929680 183930123 -5349431 - LTR1B LTR ERV1 0 826 365 261 100 0 33 chr6 183930124 183930184 -5349370 - LTR1B LTR ERV1 -404 422 365 1760 180 39 24 chr6 183930185 183930601 -5348953 - LTR1B LTR ERV1 -404 422 1 941 210 35 31 chr6 183931348 183931577 -5347977 + L1MCa LINE L1 169 398 -6166 2191 220 44 58 chr6 183931578 183932685 -5346869 + L1MCa LINE L1 705 1802 -4762 * 9922 210 51 25 chr6 183932684 183932907 -5346647 + L1MCa LINE L1 19 235 -6191 1935 143 164 11 chr6 183932907 183933278 -5346276 + MSTA LTR MaLR 1 428 0 9922 210 51 25 chr6 183933278 183934170 -5345384 + L1MCa LINE L1 235 1102 -5324 2440 113 5 30 chr6 183934170 183934543 -5345011 - THE1B LTR MaLR 0 364 1 9922 210 51 25 chr6 183934543 183937131 -5342423 + L1MCa LINE L1 1102 3828 -2598 757 178 0 0 chr6 183937237 183937355 -5342199 - AluSq/x SINE Alu -184 129 12 1084 250 99 8 chr6 183937397 183938004 -5341550 - L1MEc LINE L1 -2670 3545 2884 1285 194 24 61 chr6 183938175 183938468 -5341086 - AluJo SINE Alu -30 282 1 21 36 0 0 chr6 183938516 183938544 -5341010 + AT_rich Low_complexity Low_complexity 1 28 0 466 329 40 40 chr6 183938581 183938806 -5340748 - L1MEc LINE L1 -4574 1822 1598 480 297 68 47 chr6 183938907 183939288 -5340266 - L1MEc LINE L1 -4947 1449 1061 1115 273 40 16 chr6 183939288 183939666 -5339888 - L1MD2 LINE L1 -12 6347 5961 808 170 45 15 chr6 183939667 183939867 -5339687 - L1MC3 LINE L1 -772 7013 6808 1918 236 26 15 chr6 183939871 183940478 -5339076 - L1M4 LINE L1 -1551 4831 4218 2649 90 98 5 chr6 183940503 183940913 -5338641 - LTR7 LTR ERV1 -2 448 1 2291 91 52 13 chr6 183940913 183941297 -5338257 - HERVH LTR ERV1 0 7713 7315 1287 138 18 5 chr6 183941290 183941507 -5338047 - HERVH LTR ERV1 -1894 5819 5600 * 2007 168 14 0 chr6 183941508 183941871 -5337683 - HERVH LTR ERV1 -2564 5149 4782 * 2241 129 0 3 chr6 183941862 183942211 -5337343 - HERVH LTR ERV1 -2878 4835 4488 3268 89 4 4 chr6 183942213 183942707 -5336847 - HERVH LTR ERV1 -3720 3993 3500 782 155 20 0 chr6 183942706 183942854 -5336700 - HERVH LTR ERV1 -4423 3290 3140 * 16448 92 11 32 chr6 183942848 183946012 -5333542 - HERVH LTR ERV1 -4726 2987 1 2084 84 3 8 chr6 183946014 183946375 -5333179 - LTR7 LTR ERV1 -2 448 1 963 226 91 10 chr6 183946379 183946688 -5332866 - L1M4 LINE L1 -2205 4177 3844 319 274 44 0 chr6 183946690 183946803 -5332751 - L1M4 LINE L1 -2565 3817 3700 490 220 17 0 chr6 183946871 183946989 -5332565 - L1MEc LINE L1 -1551 4831 4712 457 272 115 0 chr6 183947041 183947328 -5332226 - L1MEc LINE L1 -2661 3721 3402 751 235 192 0 chr6 183947332 183947537 -5332017 + MLT2C1 LTR ERVL 93 358 -39 267 31 0 0 chr6 183947537 183947569 -5331985 + (CA)n Simple_repeat Simple_repeat 2 33 0 751 235 192 0 chr6 183947569 183947618 -5331936 + MLT2C1 LTR ERVL 358 396 -1 1524 287 89 11 chr6 183947629 183948160 -5331394 - L1MC4 LINE L1 -794 7248 6643 212 0 36 0 chr6 183948160 183948188 -5331366 + (TG)n Simple_repeat Simple_repeat 1 29 0 1524 287 89 11 chr6 183948188 183948388 -5331166 - L1MC4 LINE L1 -1399 6643 6460 428 323 45 8 chr6 183949107 183949509 -5330045 - L1MEc LINE L1 -4668 1850 1298 536 274 83 69 chr6 183949510 183949871 -5329683 - L1MEc LINE L1 -4970 1402 1037 34 0 0 0 chr6 183950521 183950555 -5328999 + AT_rich Low_complexity Low_complexity 1 34 0 830 80 0 0 chr6 183950985 183951097 -5328457 + AluY SINE Alu 200 311 0 2144 126 0 0 chr6 183951583 183951884 -5327670 + AluSc SINE Alu 1 301 -8 315 0 0 0 chr6 183952390 183952425 -5327129 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 1839 127 4 8 chr6 183952425 183952692 -5326862 - AluSx SINE Alu -27 285 20 25 0 0 0 chr6 183952800 183952825 -5326729 + AT_rich Low_complexity Low_complexity 1 25 0 502 362 0 0 chr6 183952984 183953147 -5326407 - MIR SINE MIR -29 233 71 2373 95 0 0 chr6 183953298 183953615 -5325939 + L1PA7 LINE L1 5832 6148 -6 1636 167 72 6 chr6 184006065 184006424 -5273130 - L1PB4 LINE L1 0 6156 5774 1285 205 25 0 chr6 184006440 184006684 -5272870 - AluJb SINE Alu -6 306 57 322 355 49 29 chr6 184006953 184007198 -5272356 - MIR SINE MIR -11 251 2 438 274 105 39 chr6 184007236 184007463 -5272091 + L1ME4a LINE L1 5622 5833 -288 2243 106 0 16 chr6 184007463 184007774 -5271780 + AluSx SINE Alu 1 306 -6 438 274 105 39 chr6 184007774 184008005 -5271549 + L1ME4a LINE L1 5833 6110 -11 252 215 89 0 chr6 184008176 184008255 -5271299 - L1MEc LINE L1 -6273 290 205 781 202 6 6 chr6 184008282 184008450 -5271104 - L1MD1 LINE L1 -14 6228 6061 1853 178 40 40 chr6 184008454 184009002 -5270552 + MLT2A2 LTR ERVL 12 554 0 1467 189 85 6 chr6 184009002 184009319 -5270235 - L1MD1 LINE L1 -177 6065 5724 1382 265 19 17 chr6 184009324 184009803 -5269751 - L1MDa LINE L1 -1755 4785 4306 423 267 13 21 chr6 184009777 184009948 -5269606 - L1MDa LINE L1 -3613 2927 2761 * 526 211 8 23 chr6 184009954 184010087 -5269467 - L1MDa LINE L1 -4537 2003 1873 583 285 94 12 chr6 184010461 184010850 -5268704 + L1MCa LINE L1 1235 1854 -4753 449 314 98 45 chr6 184010921 184011297 -5268257 + L1ME LINE L1 101 496 -5574 324 0 0 0 chr6 184011480 184011516 -5268038 + (CA)n Simple_repeat Simple_repeat 1 36 0 310 262 0 0 chr6 184012355 184012416 -5267138 + Charlie1 DNA MER1_type 1 61 -2700 993 263 124 46 chr6 184012433 184012908 -5266646 - MLT1E2 LTR MaLR -6 620 109 2656 264 110 45 chr6 184013022 184014331 -5265223 + Charlie1 DNA MER1_type 70 2755 -6 1945 179 37 39 chr6 184014498 184015054 -5264500 + MLT2A2 LTR ERVL 1 553 -1 191 278 56 74 chr6 184016557 184016665 -5262889 - MIR3 SINE MIR -1 207 102 2398 80 0 3 chr6 184017132 184017443 -5262111 + AluY SINE Alu 1 310 -1 288 0 0 0 chr6 184017445 184017477 -5262077 + (TA)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chr6 184017476 184017505 -5262049 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 22 35 0 0 chr6 184017988 184018017 -5261537 + AT_rich Low_complexity Low_complexity 1 29 0 225 180 0 0 chr6 184019053 184019103 -5260451 + (CTCA)n Simple_repeat Simple_repeat 2 51 0 752 251 35 7 chr6 184019131 184019320 -5260234 - MLT1A1 LTR MaLR 0 426 179 22 0 0 0 chr6 184019337 184019359 -5260195 + AT_rich Low_complexity Low_complexity 1 22 0 315 302 73 42 chr6 184019579 184019771 -5259783 - L2 LINE L2 -1784 1530 1333 258 302 24 41 chr6 184021503 184021672 -5257882 + L1ME LINE L1 5689 5854 -267 238 354 74 17 chr6 184021801 184021976 -5257578 - L2 LINE L2 -523 2791 2607 193 290 70 50 chr6 184022239 184022339 -5257215 + L2 LINE L2 3202 3303 -10 1855 121 137 74 chr6 184023015 184023395 -5256159 + MER4A LTR ERV1 261 664 0 534 331 132 51 chr6 184024475 184025432 -5254122 + L2 LINE L2 1871 2904 -410 240 86 0 0 chr6 184025451 184025486 -5254068 + (TG)n Simple_repeat Simple_repeat 2 36 0 630 285 41 14 chr6 184025684 184025905 -5253649 + L2 LINE L2 1353 1579 -1735 372 224 7 34 chr6 184026436 184026583 -5252971 + (TATATG)n Simple_repeat Simple_repeat 2 144 0 676 261 21 81 chr6 184027222 184027506 -5252048 + L1MC/D LINE L1 5392 5658 -2150 511 225 46 6 chr6 184027622 184027795 -5251759 + L1M4 LINE L1 5118 5297 -849 306 261 0 15 chr6 184029033 184029098 -5250456 + MLT1J1 LTR MaLR 245 308 -138 180 212 0 0 chr6 184029607 184029640 -5249914 + L2 LINE L2 2282 2314 -1000 323 255 0 71 chr6 184029845 184030029 -5249525 + C-rich Low_complexity Low_complexity 2 172 0 449 265 6 39 chr6 184030152 184030333 -5249221 + CT-rich Low_complexity Low_complexity 5 179 0 308 347 12 35 chr6 184030341 184030514 -5249040 - MLT1J LTR MaLR -160 351 183 407 325 0 0 chr6 184030960 184031080 -5248474 - MLT1J LTR MaLR -349 162 43 207 0 0 0 chr6 184031125 184031148 -5248406 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 926 186 0 0 chr6 184032508 184032675 -5246879 - FRAM SINE Alu -1 175 9 609 283 143 23 chr6 184032783 184033511 -5246043 + L1ME3A LINE L1 2147 2961 -3185 522 281 113 47 chr6 184033512 184033804 -5245750 + L1ME3A LINE L1 5460 5731 -431 1944 164 7 0 chr6 184033804 184034109 -5245445 + AluJo SINE Alu 1 307 -5 522 281 113 47 chr6 184034109 184034435 -5245119 + L1ME3A LINE L1 5731 6138 -24 23 68 0 0 chr6 184034541 184034585 -5244969 + AT_rich Low_complexity Low_complexity 1 44 0 2070 148 132 5 chr6 184035187 184035558 -5243996 + MER47B DNA MER2_type 1 418 0 277 270 52 66 chr6 184035635 184035846 -5243708 + L1ME LINE L1 4639 4846 -1300 594 264 0 5 chr6 184035989 184036190 -5243364 + L1MD3 LINE L1 7796 7995 0 376 337 16 21 chr6 184036216 184036406 -5243148 + L1ME LINE L1 4980 5168 -978 539 333 42 0 chr6 184036794 184036986 -5242568 - MER20B DNA MER1_type -282 501 302 11455 126 24 7 chr6 184037096 184038828 -5240726 - HERVL-A2 LTR ERVL -3893 1761 1 1940 175 45 35 chr6 184038828 184039372 -5240182 - MLT2A2 LTR ERVL 0 554 1 3883 161 11 50 chr6 184039372 184040152 -5239402 - THE1C-int LTR MaLR -827 753 4 1435 184 89 45 chr6 184040155 184040514 -5239040 - THE1C LTR MaLR 0 375 1 342 299 94 68 chr6 184040605 184040913 -5238641 + L1MEd LINE L1 894 1209 -4910 444 242 102 23 chr6 184041017 184041145 -5238409 + MLT1I LTR MaLR 73 210 -199 285 276 112 63 chr6 184041788 184042216 -5237338 + L1ME LINE L1 5355 5597 -573 13681 169 31 16 chr6 184042328 184043191 -5236363 + L1MA2 LINE L1 454 1303 -6262 2319 77 3 3 chr6 184043191 184043490 -5236064 - AluY SINE Alu -12 299 1 13681 169 31 16 chr6 184043490 184045044 -5234510 + L1MA2 LINE L1 1303 2907 -4658 6051 209 24 9 chr6 184045151 184046567 -5232987 + L1MA2 LINE L1 3632 5068 -2497 5327 196 4 20 chr6 184046559 184047260 -5232294 + L1MA2 LINE L1 6789 7473 -250 * 2371 101 0 0 chr6 184047260 184047567 -5231987 + AluSx SINE Alu 1 307 -5 5327 196 4 20 chr6 184047567 184047815 -5231739 + L1MA2 LINE L1 7473 7723 0 431 295 0 25 chr6 184047909 184048031 -5231523 + L2 LINE L2 3178 3296 -17 504 295 89 11 chr6 184048115 184048484 -5231070 - L1ME LINE L1 -344 5777 5380 2134 163 6 6 chr6 184049100 184049450 -5230104 + MER66B LTR ERV1 7 356 -130 230 259 24 0 chr6 184050695 184050780 -5228774 + L1ME3A LINE L1 6057 6143 -27 2268 60 35 0 chr6 184050846 184051131 -5228423 + AluY SINE Alu 1 295 -16 1901 150 33 0 chr6 184051298 184051598 -5227956 + LTR18B LTR ERVL 1 310 -304 22 70 0 0 chr6 184051847 184051890 -5227664 + AT_rich Low_complexity Low_complexity 1 43 0 1053 285 70 23 chr6 184051971 184052714 -5226840 - L1ME LINE L1 -447 5723 4942 560 258 48 32 chr6 184052765 184053013 -5226541 - L1ME LINE L1 -1377 4769 4518 29 47 0 0 chr6 184053154 184053197 -5226357 + AT_rich Low_complexity Low_complexity 1 43 0 42497 42 22 1 chr6 184053215 184059240 -5220314 - L1PA5 LINE L1 0 6154 2 21 0 0 0 chr6 184059733 184059754 -5219800 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 184061316 184061345 -5218209 + AT_rich Low_complexity Low_complexity 1 29 0 222 185 0 74 chr6 184061666 184061720 -5217834 - L2 LINE L2 0 3313 3264 205 237 33 40 chr6 184062213 184062365 -5217189 + (TTTA)n Simple_repeat Simple_repeat 2 152 0 28 48 0 0 chr6 184062895 184062937 -5216617 + AT_rich Low_complexity Low_complexity 1 42 0 25 51 0 0 chr6 184062974 184063013 -5216541 + AT_rich Low_complexity Low_complexity 1 39 0 2691 30 0 30 chr6 184063415 184063743 -5215811 + AluYb8 SINE Alu 1 318 0 452 296 65 31 chr6 184067184 184067444 -5212110 + L2 LINE L2 3042 3310 -3 2352 46 0 0 chr6 184068285 184068596 -5210958 - AluY SINE Alu 0 311 1 379 211 0 0 chr6 184070449 184070525 -5209029 - LTR28 LTR ERV1 0 1020 945 2030 203 26 26 chr6 184070578 184071109 -5208445 - LTR27 LTR ERV1 -130 506 3 198 0 0 0 chr6 184071122 184071144 -5208410 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 648 315 26 13 chr6 184071506 184071738 -5207816 + MIR SINE MIR 2 236 -26 968 225 41 71 chr6 184073107 184073574 -5205980 + MLT1C LTR MaLR 2 454 -13 25 0 0 0 chr6 184074180 184074205 -5205349 + AT_rich Low_complexity Low_complexity 1 25 0 193 227 45 0 chr6 184074890 184074934 -5204620 - MIR SINE MIR -154 108 63 21 0 0 0 chr6 184075647 184075668 -5203886 + AT_rich Low_complexity Low_complexity 1 21 0 1428 215 62 72 chr6 184076398 184076975 -5202579 - LTR8A LTR ERV1 -2 725 177 362 192 14 0 chr6 184076976 184077049 -5202505 + THE1B LTR MaLR 291 364 0 344 318 67 28 chr6 184077135 184077314 -5202240 - L1ME LINE L1 -588 5533 5348 1854 160 9 6 chr6 184077563 184077894 -5201660 + MER46B DNA MER2_type 2 208 -28 1759 180 47 29 chr6 184077895 184078436 -5201118 + MLT2A2 LTR ERVL 1 554 0 25 75 0 0 chr6 184078501 184078554 -5201000 + AT_rich Low_complexity Low_complexity 1 53 0 1684 148 34 47 chr6 184078685 184078983 -5200571 - AluJb SINE Alu -18 294 1 23 33 0 0 chr6 184078994 184079024 -5200530 + AT_rich Low_complexity Low_complexity 1 30 0 241 271 17 0 chr6 184080410 184080469 -5199085 - L2 LINE L2 -25 3247 3188 690 273 100 61 chr6 184080503 184081013 -5198541 + MLT1F LTR MaLR 13 542 0 2098 242 107 26 chr6 184081085 184081638 -5197916 - L1MEc LINE L1 -4934 1462 955 474 18 0 0 chr6 184081638 184081693 -5197861 + (TGGA)n Simple_repeat Simple_repeat 2 56 0 2098 242 107 26 chr6 184081693 184082183 -5197371 - L1MEc LINE L1 -5441 955 334 1269 202 40 35 chr6 184082298 184082675 -5196879 - L1MDa LINE L1 -4763 1881 1503 383 281 26 20 chr6 184082678 184082831 -5196723 + MLT1A2 LTR MaLR 8 161 -213 282 116 0 0 chr6 184082849 184082892 -5196662 + (TC)n Simple_repeat Simple_repeat 2 44 0 936 197 6 6 chr6 184082934 184083112 -5196442 + MLT1A2 LTR MaLR 189 366 -8 3122 209 18 14 chr6 184083114 184083843 -5195711 + MLT1A2-int LTR MaLR 1 732 -639 1828 203 45 16 chr6 184084179 184084417 -5195137 + MLT1A2-int LTR MaLR 1300 1557 -178 2036 143 33 30 chr6 184084417 184084780 -5194774 + THE1B LTR MaLR 1 364 0 1828 203 45 16 chr6 184084780 184084965 -5194589 + MLT1A2-int LTR MaLR 1557 1735 0 1373 220 18 52 chr6 184084965 184085352 -5194202 + MLT1A2 LTR MaLR 1 374 0 199 338 15 0 chr6 184085718 184085786 -5193768 - L2 LINE L2 0 3313 3245 240 284 27 0 chr6 184086922 184086996 -5192558 - L2 LINE L2 0 3313 3238 473 253 51 40 chr6 184087762 184087991 -5191563 - MLT1H LTR MaLR -269 280 5 395 289 0 0 chr6 184088153 184088267 -5191287 - L1MC4 LINE L1 -5 8037 7924 643 208 72 21 chr6 184088280 184088516 -5191038 + L1MB7 LINE L1 5937 6184 0 2094 160 0 0 chr6 184092396 184092703 -5186851 - AluJo SINE Alu -5 307 1 1464 199 60 7 chr6 184093048 184093496 -5186058 - Charlie1 DNA MER1_type -37 2724 2253 649 171 0 68 chr6 184093516 184093662 -5185892 + FRAM SINE Alu 29 164 -12 3138 240 71 21 chr6 184093863 184095361 -5184193 - L1MDa LINE L1 -2598 4046 2472 2974 236 74 42 chr6 184095422 184096611 -5182943 - L1MDa LINE L1 -5141 1401 175 9644 39 3 1 chr6 184096623 184098571 -5180983 - L1PA3 LINE L1 -2 6153 4203 5470 50 1 0 chr6 184098571 184099296 -5180258 + L1P LINE L1 1218 1943 -4203 417 280 0 0 chr6 184099305 184099437 -5180117 - L1MDa LINE L1 -6383 159 28 274 251 103 42 chr6 184100072 184100402 -5179152 - L1MC4 LINE L1 0 8042 7693 309 340 39 13 chr6 184100435 184100591 -5178963 - L1MC4 LINE L1 -408 7634 7475 198 191 0 0 chr6 184100705 184100747 -5178807 + (CA)n Simple_repeat Simple_repeat 2 43 0 349 279 67 61 chr6 184101104 184101233 -5178321 + L1M4 LINE L1 4170 4297 -1849 2506 118 33 0 chr6 184101233 184101596 -5177958 + THE1C LTR MaLR 1 375 0 9315 122 41 44 chr6 184101596 184103176 -5176378 + THE1C-int LTR MaLR 1 1576 -4 2509 114 22 0 chr6 184103180 184103547 -5176007 + THE1C LTR MaLR 1 375 0 349 279 67 61 chr6 184103547 184103906 -5175648 + L1M4 LINE L1 4299 4667 -1479 379 224 232 4 chr6 184103924 184104156 -5175398 + L1M4 LINE L1 5228 5500 -674 24 67 0 0 chr6 184104733 184104778 -5174776 + AT_rich Low_complexity Low_complexity 1 45 0 458 266 114 13 chr6 184106048 184106206 -5173348 + MIR SINE MIR 25 198 -64 322 250 0 0 chr6 184106206 184106274 -5173280 + Tigger3b DNA MER2_type 1 68 -1163 22 0 0 0 chr6 184106411 184106433 -5173121 + AT_rich Low_complexity Low_complexity 1 22 0 598 176 0 34 chr6 184106445 184106564 -5172990 - MLT1A1 LTR MaLR -250 115 1 1839 178 54 26 chr6 184106573 184107000 -5172554 + MER65A LTR ERV1 1 439 -6 196 415 32 16 chr6 184107260 184107383 -5172171 + L2 LINE L2 3111 3235 -37 1374 204 98 65 chr6 184107811 184108300 -5171254 - MLT1D LTR MaLR 0 505 1 523 178 0 0 chr6 184109190 184109280 -5170274 - FRAM SINE Alu -45 131 42 1085 158 41 0 chr6 184109315 184109486 -5170068 - AluJb SINE Alu -101 211 34 5882 142 37 23 chr6 184109724 184110784 -5168770 - HSMAR2 DNA Mariner -1 1301 227 4901 119 92 5 chr6 184110886 184111780 -5167774 + Tigger3b DNA MER2_type 260 1231 0 185 327 0 0 chr6 184111781 184111836 -5167718 + MIR SINE MIR 198 252 -10 227 338 175 0 chr6 184111874 184112028 -5167526 - MIR SINE MIR -34 228 48 1573 151 10 29 chr6 184112182 184112493 -5167061 + THE1A LTR MaLR 2 306 -49 7113 55 18 0 chr6 184112516 184113491 -5166063 - L1PA6 LINE L1 0 6154 5176 180 0 0 0 chr6 184113491 184113511 -5166043 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6946 67 7 19 chr6 184113512 184115027 -5164527 - SVA Other Other -839 1380 1 278 0 0 106 chr6 184115027 184115074 -5164480 + (GGGAGA)n Simple_repeat Simple_repeat 2 43 0 2473 51 0 3 chr6 184115075 184115370 -5164184 - AluY SINE Alu -17 294 1 471 122 0 14 chr6 184115371 184115445 -5164109 + THE1A LTR MaLR 303 375 0 1111 277 7 3 chr6 184115885 184116195 -5163359 - L1P3 LINE L1 -5494 381 71 420 352 11 11 chr6 184116419 184116595 -5162959 + MER5B DNA MER1_type 3 178 0 486 339 192 27 chr6 184116596 184117159 -5162395 + L2 LINE L2 2216 2871 -443 220 326 151 0 chr6 184117207 184117293 -5162261 - L2 LINE L2 0 3272 3174 207 296 0 0 chr6 184117341 184117385 -5162169 - L2 LINE L2 -253 3060 3017 186 363 52 22 chr6 184117688 184117823 -5161731 + L2 LINE L2 3175 3313 0 308 274 294 20 chr6 184117994 184118198 -5161356 + MIR SINE MIR 3 262 0 793 240 153 0 chr6 184119451 184119647 -5159907 + MIR SINE MIR 13 238 -24 191 329 57 0 chr6 184120762 184120832 -5158722 - L2 LINE L2 -280 2992 2919 23 0 0 0 chr6 184121816 184121839 -5157715 + AT_rich Low_complexity Low_complexity 1 23 0 1577 181 46 0 chr6 184122210 184122491 -5157063 - AluJo SINE Alu -18 294 1 208 239 0 0 chr6 184122614 184122660 -5156894 + A-rich Low_complexity Low_complexity 3 48 0 38 51 0 0 chr6 184124249 184124308 -5155246 + AT_rich Low_complexity Low_complexity 1 59 0 26 50 0 0 chr6 184124523 184124563 -5154991 + AT_rich Low_complexity Low_complexity 1 40 0 397 250 62 0 chr6 184125888 184125984 -5153570 - L2 LINE L2 -33 3280 3179 201 217 22 0 chr6 184126246 184126292 -5153262 + (TA)n Simple_repeat Simple_repeat 2 48 0 439 254 78 26 chr6 184126811 184127004 -5152550 + L3 LINE CR1 1123 1325 -252 1509 96 4 9 chr6 184127179 184127408 -5152146 + MER4E LTR ERV1 550 777 -2 279 411 46 0 chr6 184127425 184127576 -5151978 + L2 LINE L2 3115 3272 0 363 305 23 8 chr6 184127623 184127754 -5151800 - MER52A LTR ERV1 -30 1725 1593 * 952 264 198 70 chr6 184127752 184128464 -5151090 - MER52A LTR ERV1 -285 1470 668 19421 126 29 12 chr6 184128473 184131618 -5147936 - MER52A-int LTR ERV1 0 7091 3892 570 140 11 0 chr6 184131619 184131712 -5147842 - MER52A-int LTR ERV1 -4233 2858 2765 * 7708 139 6 11 chr6 184131711 184132943 -5146611 - MER52A-int LTR ERV1 -3205 3886 2662 1077 164 16 0 chr6 184132939 184133128 -5146426 - MER52A-int LTR ERV1 -5900 1191 1000 * 3900 205 46 15 chr6 184133135 184133302 -5146252 - MER52A-int LTR ERV1 -6200 891 731 363 44 0 0 chr6 184133302 184133347 -5146207 + (CAA)n Simple_repeat Simple_repeat 2 46 0 3900 205 46 15 chr6 184133347 184134043 -5145511 - MER52A-int LTR ERV1 -6360 731 1 824 242 210 67 chr6 184134043 184134703 -5144851 - MER52A LTR ERV1 0 1755 545 237 135 0 0 chr6 184134726 184134763 -5144791 - MER61B LTR ERV1 -287 138 102 * 837 241 6 0 chr6 184134740 184134914 -5144640 - LTR28 LTR ERV1 -842 178 4 408 40 0 0 chr6 184135182 184135232 -5144322 + (TAA)n Simple_repeat Simple_repeat 2 51 0 250 313 23 39 chr6 184135350 184135478 -5144076 + MIR SINE MIR 78 203 -59 3186 104 22 22 chr6 184136909 184137401 -5142153 - LTR22B LTR ERVK 0 492 1 404 320 7 26 chr6 184137949 184138102 -5141452 + L2 LINE L2 3160 3309 -4 2132 123 0 0 chr6 184138296 184138580 -5140974 + AluSx SINE Alu 1 284 -28 356 40 20 0 chr6 184138588 184138638 -5140916 + (TG)n Simple_repeat Simple_repeat 2 52 0 1598 117 46 4 chr6 184140543 184140872 -5138682 - Tigger4(Zombi) DNA MER2_type 0 2731 2 312 298 26 18 chr6 184142267 184142381 -5137173 - MLT1K LTR MaLR -152 436 322 278 260 180 0 chr6 184142620 184142720 -5136834 - MER97c DNA MER1_type? -923 167 50 389 353 39 13 chr6 184143301 184143457 -5136097 + MIR3 SINE MIR 38 197 -11 1392 153 28 75 chr6 184144349 184144669 -5134885 - L1PB4 LINE L1 -1 6155 5851 276 229 114 69 chr6 184144702 184144833 -5134721 - MLT1J LTR MaLR -69 442 306 1688 211 130 45 chr6 184146390 184147057 -5132497 - MER50 LTR ERV1 -1 733 10 1018 275 61 10 chr6 184148567 184149025 -5130529 - L1ME2 LINE L1 -9 6157 5652 1541 258 63 37 chr6 184149037 184149817 -5129737 - L1ME2 LINE L1 -2005 4141 3342 1102 249 19 14 chr6 184149889 184150307 -5129247 - L1ME2 LINE L1 -2955 3191 2772 2204 262 132 16 chr6 184150307 184151197 -5128357 - L1MC4 LINE L1 -356 7686 6901 273 29 0 0 chr6 184151197 184151231 -5128323 + (CA)n Simple_repeat Simple_repeat 2 35 0 2204 262 132 16 chr6 184151231 184151286 -5128268 - L1MC4 LINE L1 -1141 6901 6854 2506 114 0 14 chr6 184151286 184151646 -5127908 + THE1A LTR MaLR 1 355 0 2204 262 132 16 chr6 184151646 184151728 -5127826 - L1MC4 LINE L1 -1188 6854 6538 529 193 9 0 chr6 184151730 184151839 -5127715 - THE1B LTR MaLR -2 362 253 34 42 0 0 chr6 184151849 184151897 -5127657 + AT_rich Low_complexity Low_complexity 1 48 0 203 102 0 61 chr6 184151968 184152017 -5127537 + (TA)n Simple_repeat Simple_repeat 2 47 0 1095 43 0 0 chr6 184152027 184152165 -5127389 + L1PA4 LINE L1 6016 6153 -2 424 273 61 5 chr6 184152165 184152515 -5127039 - L1M4 LINE L1 -869 5277 4792 479 280 9 0 chr6 184152842 184152949 -5126605 + MIR SINE MIR 55 162 -100 817 116 0 0 chr6 184154607 184154719 -5124835 + AluSg/x SINE Alu 163 274 -36 222 62 0 0 chr6 184154723 184154755 -5124799 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1276 219 34 20 chr6 184155124 184155475 -5124079 + MLT1A1 LTR MaLR 10 365 0 24 53 0 0 chr6 184155502 184155540 -5124014 + AT_rich Low_complexity Low_complexity 1 38 0 233 241 84 0 chr6 184155591 184155674 -5123880 - MLT1J1 LTR MaLR -21 425 336 1248 94 0 26 chr6 184156270 184156461 -5123093 + L1PA13 LINE L1 5959 6144 -19 24 85 0 0 chr6 184156462 184156521 -5123033 + AT_rich Low_complexity Low_complexity 1 59 0 319 173 53 27 chr6 184156579 184156654 -5122900 + L1ME1 LINE L1 6082 6158 -8 283 267 186 19 chr6 184156835 184156996 -5122558 - L2 LINE L2 -521 2793 2606 21 0 0 0 chr6 184157391 184157412 -5122142 + AT_rich Low_complexity Low_complexity 1 21 0 799 210 44 31 chr6 184157541 184157770 -5121784 - L1ME1 LINE L1 -8 6158 5927 1339 197 64 52 chr6 184157878 184158100 -5121454 - L1MC1 LINE L1 0 6613 6382 3180 143 37 6 chr6 184158100 184158611 -5120943 - MER1A DNA MER1_type 0 527 1 1339 197 64 52 chr6 184158611 184158795 -5120759 - L1MC1 LINE L1 -231 6382 6202 650 194 0 0 chr6 184158795 184158903 -5120651 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3838 136 42 11 chr6 184158893 184159623 -5119931 + Tigger3(Golem) DNA MER2_type 2277 3029 0 8850 224 51 19 chr6 184159623 184162079 -5117475 - L1MC1 LINE L1 -421 6203 3557 1919 122 0 11 chr6 184162079 184162357 -5117197 - AluY SINE Alu -36 275 1 8850 224 51 19 chr6 184162357 184164117 -5115437 - L1MC1 LINE L1 -3067 3557 1854 298 263 86 34 chr6 184164900 184165075 -5114479 + Harlequin LTR ERV1 187 370 -6279 450 358 0 0 chr6 184165315 184165508 -5114046 + Harlequin LTR ERV1 778 970 -6815 1614 331 47 34 chr6 184165739 184166283 -5113271 + Harlequin LTR ERV1 954 1489 -6296 2297 62 0 42 chr6 184166283 184166591 -5112963 - AluY SINE Alu -16 295 1 1614 331 47 34 chr6 184166591 184170444 -5109110 + Harlequin LTR ERV1 1489 5756 -2029 358 293 37 37 chr6 184171200 184171415 -5108139 + Harlequin LTR ERV1 3377 3591 -3305 1359 335 14 28 chr6 184171639 184172418 -5107136 + Harlequin LTR ERV1 6883 7650 -135 2404 47 3 7 chr6 184172842 184173141 -5106413 - AluY SINE Alu -13 298 1 6305 190 108 16 chr6 184173486 184173829 -5105725 - L1MC1 LINE L1 -4564 1862 1552 1563 105 54 83 chr6 184173829 184174105 -5105449 - AluSx SINE Alu -13 299 32 6305 190 108 16 chr6 184174105 184175438 -5104116 - L1MC1 LINE L1 -4874 1552 31 23 0 0 0 chr6 184176040 184176063 -5103491 + AT_rich Low_complexity Low_complexity 1 23 0 2498 74 0 0 chr6 184178270 184178579 -5100975 - AluY SINE Alu -2 309 1 1412 164 43 4 chr6 184178840 184179120 -5100434 + L1MC1 LINE L1 6006 6296 -37 11388 160 36 23 chr6 184179126 184181347 -5098207 - HUERS-P3b LTR ERV1 -4766 2652 403 710 98 16 49 chr6 184181347 184181470 -5098084 - LTR9 LTR ERV1 -493 119 1 1971 164 27 8 chr6 184181470 184181843 -5097711 - MER4D LTR ERV1 -190 713 334 296 258 100 39 chr6 184181847 184182126 -5097428 - L1MEc LINE L1 -5452 944 649 252 324 48 38 chr6 184182140 184182350 -5097204 - L1MEc LINE L1 -5921 475 264 538 271 104 62 chr6 184182566 184182987 -5096567 - L1M4 LINE L1 -1818 4328 3890 531 308 60 0 chr6 184182987 184183172 -5096382 + MIR SINE MIR 9 204 -58 5722 237 46 11 chr6 184183288 184183878 -5095676 - L1MEd LINE L1 -2102 4027 3459 251 0 59 0 chr6 184183878 184183912 -5095642 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5722 237 46 11 chr6 184183912 184185080 -5094474 - L1MEd LINE L1 -2670 3459 2208 2041 136 3 34 chr6 184185110 184185433 -5094121 - AluSq SINE Alu 0 313 1 323 280 73 20 chr6 184185761 184185911 -5093643 - L1MEd LINE L1 -5460 659 502 182 329 92 0 chr6 184186393 184186469 -5093085 + L2 LINE L2 3195 3277 -36 1964 214 109 17 chr6 184186471 184187012 -5092542 - L1MD2 LINE L1 -7 6352 5762 258 107 0 18 chr6 184187011 184187067 -5092487 - L1MDa LINE L1 -4003 2537 2483 * 834 268 13 17 chr6 184187045 184187347 -5092207 - L1MDa LINE L1 -4508 2032 1732 1429 263 83 57 chr6 184187363 184187710 -5091844 - L1MDa LINE L1 -5572 971 635 363 60 0 0 chr6 184187710 184187760 -5091794 + (CA)n Simple_repeat Simple_repeat 1 50 0 1429 263 83 57 chr6 184187760 184188191 -5091363 - L1MDa LINE L1 -5908 635 172 3989 200 28 25 chr6 184189146 184190311 -5089243 + L1MA9 LINE L1 4780 5941 -371 369 62 0 0 chr6 184190311 184190359 -5089195 + (CATA)n Simple_repeat Simple_repeat 3 50 0 3989 200 28 25 chr6 184190359 184190652 -5088902 + L1MA9 LINE L1 5941 6252 -60 1804 123 51 91 chr6 184190652 184191003 -5088551 + MER1B DNA MER1_type 1 337 0 3989 200 28 25 chr6 184191003 184191027 -5088527 + L1MA9 LINE L1 6252 6274 -38 303 295 93 14 chr6 184192019 184192158 -5087396 - HAL1 LINE L1 -719 1788 1639 2213 124 48 25 chr6 184193079 184193435 -5086119 - THE1B LTR MaLR 0 364 1 11456 97 10 2 chr6 184193435 184195004 -5084550 - THE1B-int LTR MaLR 0 1580 1 1907 132 72 29 chr6 184195004 184195353 -5084201 - THE1B LTR MaLR 0 364 1 307 309 107 50 chr6 184196052 184196556 -5082998 - HAL1 LINE L1 -1669 838 306 1882 137 52 27 chr6 184196637 184197003 -5082551 - THE1C LTR MaLR 0 375 1 1113 167 31 73 chr6 184197006 184197045 -5082509 - MER31A LTR ERV1 -1 484 445 2280 150 54 7 chr6 184197045 184197452 -5082102 + MSTB LTR MaLR 1 426 0 1113 167 31 73 chr6 184197452 184197474 -5082080 - MER31A LTR ERV1 -40 445 424 2261 77 47 3 chr6 184197474 184197772 -5081782 - AluY SINE Alu 0 311 1 1113 167 31 73 chr6 184197772 184198026 -5081528 - MER31A LTR ERV1 -61 424 181 1471 221 9 6 chr6 184199713 184200062 -5079492 - MLT1A1 LTR MaLR -12 353 4 784 154 0 122 chr6 184200387 184200601 -5078953 + MER53 DNA DNA 1 188 -1 21 36 0 0 chr6 184200802 184200830 -5078724 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr6 184201096 184201131 -5078423 + AT_rich Low_complexity Low_complexity 1 35 0 239 250 36 0 chr6 184201509 184201593 -5077961 - MLT2D LTR ERVL -120 294 208 460 235 0 17 chr6 184201976 184202049 -5077505 + MLT2D LTR ERVL 301 373 -41 452 47 0 16 chr6 184202049 184202113 -5077441 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 460 235 0 17 chr6 184202113 184202154 -5077400 + MLT2D LTR ERVL 373 413 -1 548 330 77 5 chr6 184202500 184202709 -5076845 - L3 LINE CR1 -386 1191 968 2164 36 0 0 chr6 184203209 184203457 -5076097 - AluY SINE Alu -3 308 61 531 374 35 9 chr6 184203766 184204111 -5075443 - L1MEc LINE L1 -5527 869 516 327 284 53 60 chr6 184204311 184204596 -5074958 - L1MEc LINE L1 -6073 323 41 205 171 0 0 chr6 184204722 184204757 -5074797 + CT-rich Low_complexity Low_complexity 2 36 0 336 119 0 0 chr6 184204757 184204816 -5074738 + (CA)n Simple_repeat Simple_repeat 1 59 0 520 263 68 56 chr6 184204818 184205335 -5074219 - L1MC5 LINE L1 -178 7783 7261 305 230 73 58 chr6 184205444 184205635 -5073919 - L1MC5 LINE L1 -768 7193 7000 733 286 103 26 chr6 184205701 184206078 -5073476 + LTR16C LTR ERVL 73 478 -13 5368 178 12 11 chr6 184206306 184207440 -5072114 - L1MC1 LINE L1 0 6333 5193 1472 265 69 25 chr6 184207469 184207667 -5071887 - L1ME2 LINE L1 -8 6162 5974 2050 100 29 7 chr6 184207667 184207946 -5071608 - AluSc SINE Alu -24 285 1 1472 265 69 25 chr6 184207946 184208786 -5070768 - L1ME2 LINE L1 -196 5974 5066 222 147 49 29 chr6 184208832 184208934 -5070620 + (TA)n Simple_repeat Simple_repeat 1 104 0 723 273 30 8 chr6 184208955 184209222 -5070332 - L1MB8 LINE L1 -2 6176 5904 1228 275 38 9 chr6 184209301 184209785 -5069769 + MLT1E2 LTR MaLR 137 626 0 248 186 98 69 chr6 184209789 184209891 -5069663 - L1MB8 LINE L1 -265 5901 5797 228 103 0 0 chr6 184210062 184210101 -5069453 - L1ME2 LINE L1 -1110 5036 4998 418 294 41 5 chr6 184210691 184210885 -5068669 - L1ME2 LINE L1 -1219 4927 4727 769 274 32 13 chr6 184210901 184211273 -5068281 - L1ME2 LINE L1 -1599 4547 4169 206 387 0 8 chr6 184211411 184211530 -5068024 - MIR SINE MIR -114 148 31 14776 45 6 5 chr6 184211555 184214140 -5065414 + L1PA5 LINE L1 3554 6140 -14 186 133 33 0 chr6 184214289 184214319 -5065235 - L3 LINE CR1 -1027 550 520 522 242 28 73 chr6 184216152 184216330 -5063224 + MER20 DNA MER1_type 50 219 0 353 277 13 15 chr6 184217095 184217488 -5062066 + (TG)n Simple_repeat Simple_repeat 1 391 0 2236 113 10 3 chr6 184217556 184217866 -5061688 - AluSx SINE Alu 0 312 1 189 260 55 55 chr6 184218430 184218503 -5061051 - L2 LINE L2 -17 3296 3224 270 349 91 39 chr6 184218811 184219195 -5060359 - L2 LINE L2 -508 2806 2403 668 267 126 70 chr6 184219425 184219950 -5059604 + MER41C LTR ERV1 1 554 0 450 247 13 63 chr6 184220133 184220291 -5059263 - MIR SINE MIR -38 224 75 224 277 31 15 chr6 184220657 184220722 -5058832 - MIR SINE MIR -113 149 84 2246 110 7 0 chr6 184222030 184222330 -5057224 - AluSq SINE Alu -11 302 1 1099 96 0 0 chr6 184222330 184222465 -5057089 - AluSq/x SINE Alu -178 135 1 1004 293 123 12 chr6 184223046 184223534 -5056020 + L1M4 LINE L1 17 558 -5865 1247 279 40 30 chr6 184223936 184224779 -5054775 + L1M4 LINE L1 1026 1893 -4887 183 80 0 0 chr6 184224790 184224815 -5054739 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1190 261 119 20 chr6 184224819 184225611 -5053943 + L1M4 LINE L1 2124 2993 -4129 399 233 0 0 chr6 184225609 184225695 -5053859 + L1M4 LINE L1 6414 6499 -480 * 29 0 0 0 chr6 184226376 184226405 -5053149 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 184226569 184226598 -5052956 + AT_rich Low_complexity Low_complexity 1 29 0 201 39 0 0 chr6 184227496 184227522 -5052032 + (TG)n Simple_repeat Simple_repeat 2 27 0 474 307 78 42 chr6 184228101 184228407 -5051147 + L2 LINE L2 1604 1920 -1394 2320 240 54 34 chr6 184228408 184228982 -5050572 - L1M4 LINE L1 -1128 5018 4412 2506 111 8 0 chr6 184228982 184229334 -5050220 + THE1A LTR MaLR 1 355 0 2320 240 54 34 chr6 184229334 184229815 -5049739 - L1M4 LINE L1 -1734 4412 3942 628 317 81 34 chr6 184229960 184230370 -5049184 - L2 LINE L2 -1367 1947 1519 204 163 0 0 chr6 184230713 184230756 -5048798 + (TG)n Simple_repeat Simple_repeat 2 44 0 390 313 39 58 chr6 184231376 184231539 -5048015 + L1MDb LINE L1 742 900 -5509 1460 138 27 0 chr6 184231539 184231799 -5047755 + L1MA5A LINE L1 6031 6297 0 390 313 39 58 chr6 184231799 184231894 -5047660 + L1MDb LINE L1 900 995 -5414 597 198 16 0 chr6 184231898 184232019 -5047535 + AluSg/x SINE Alu 181 303 -6 207 347 0 0 chr6 184232126 184232198 -5047356 - MIR SINE MIR -79 183 112 1497 155 3 108 chr6 184232202 184232541 -5047013 - AluJb SINE Alu 0 307 2 1401 241 110 5 chr6 184232900 184233319 -5046235 + MLT1C LTR MaLR 1 463 -4 807 249 78 25 chr6 184233325 184233646 -5045908 + MER2 DNA MER2_type 8 345 0 189 0 0 0 chr6 184234225 184234246 -5045308 + (T)n Simple_repeat Simple_repeat 1 21 0 581 238 48 37 chr6 184234249 184234438 -5045116 + L1ME LINE L1 16 206 -6334 301 171 34 34 chr6 184234451 184234539 -5045015 + L1ME LINE L1 248 335 -6205 679 208 0 7 chr6 184234567 184234721 -5044833 + L1MD1 LINE L1 6074 6226 -16 666 284 4 55 chr6 184234882 184235136 -5044418 + MIR SINE MIR 22 262 0 26 0 0 0 chr6 184235419 184235445 -5044109 + AT_rich Low_complexity Low_complexity 1 26 0 354 302 27 88 chr6 184236094 184236389 -5043165 - L2 LINE L2 -191 3081 2805 1084 239 54 89 chr6 184236398 184236825 -5042729 - MLT2B1 LTR ERVL -2 412 1 965 138 6 0 chr6 184236825 184236984 -5042570 - ERVL-B1 LTR ERVL -7 5757 5598 20982 186 28 11 chr6 184236997 184238682 -5040872 - ERVL-B1 LTR ERVL -353 5411 3755 1581 209 11 19 chr6 184238682 184239046 -5040508 + MLT1A1 LTR MaLR 5 365 0 20982 186 28 11 chr6 184239046 184242246 -5037308 - ERVL-B1 LTR ERVL -2009 3755 414 830 167 0 70 chr6 184242261 184242447 -5037107 + MLT2B1 LTR ERVL 1 173 -347 365 253 0 10 chr6 184243352 184243451 -5036103 - MER81 DNA DNA -16 98 1 875 307 36 55 chr6 184246067 184246628 -5032926 + L1MDb LINE L1 32 581 -5842 740 296 55 13 chr6 184246854 184247310 -5032244 + L1ME LINE L1 2104 2578 -4143 789 244 82 33 chr6 184247319 184247854 -5031700 + L1ME LINE L1 5286 5832 -728 2111 47 4 0 chr6 184247855 184248133 -5031421 - L1P LINE L1 -2008 4138 3860 * 3049 36 0 5 chr6 184248131 184248516 -5031038 + L1PA5 LINE L1 5710 6092 -62 3282 185 32 3 chr6 184248626 184249317 -5030237 - L1MB3 LINE L1 -7 6176 5466 2892 219 66 21 chr6 184249321 184250724 -5028830 - L1M4 LINE L1 -3404 2978 1390 1904 170 0 7 chr6 184250724 184251024 -5028530 - AluJb SINE Alu -14 298 1 2892 219 66 21 chr6 184251024 184251305 -5028249 - L1M4 LINE L1 -4992 1390 1123 967 273 46 34 chr6 184251336 184251473 -5028081 + L1MDb LINE L1 628 762 -6182 1779 145 28 59 chr6 184251473 184251814 -5027740 + THE1C LTR MaLR 1 330 -45 2431 80 6 3 chr6 184251814 184252126 -5027428 - AluSq SINE Alu 0 313 1 1779 145 28 59 chr6 184252126 184252171 -5027383 + THE1C LTR MaLR 330 375 0 967 273 46 34 chr6 184252171 184252436 -5027118 + L1MDb LINE L1 762 1146 -5798 301 254 87 8 chr6 184252456 184252582 -5026972 + L1MDb LINE L1 1990 2125 -4816 246 283 9 38 chr6 184252586 184252692 -5026862 + L1ME1 LINE L1 6055 6157 -9 2016 125 7 3 chr6 184252714 184253001 -5026553 + AluSx SINE Alu 1 288 -24 246 62 0 0 chr6 184253004 184253036 -5026518 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 285 273 36 82 chr6 184254325 184254519 -5025035 + MARNA DNA Mariner 356 540 -46 1524 184 65 6 chr6 184254531 184254852 -5024702 - MER2 DNA MER2_type -5 340 1 253 275 33 42 chr6 184254866 184254986 -5024568 - MIR SINE MIR 0 262 144 297 237 0 26 chr6 184255325 184255401 -5024153 + (CA)n Simple_repeat Simple_repeat 1 74 0 24 32 0 0 chr6 184256690 184256721 -5022833 + AT_rich Low_complexity Low_complexity 1 31 0 21 82 0 0 chr6 184256754 184256803 -5022751 + AT_rich Low_complexity Low_complexity 1 49 0 218 257 29 0 chr6 184256970 184257040 -5022514 + (TA)n Simple_repeat Simple_repeat 2 73 0 278 314 79 22 chr6 184257046 184257364 -5022190 - L1M4 LINE L1 -1333 4813 4478 6035 168 58 2 chr6 184257506 184258671 -5020883 + Tigger3b DNA MER2_type 1 1231 0 212 204 0 19 chr6 184258783 184258837 -5020717 + T-rich Low_complexity Low_complexity 4 56 0 397 233 179 3 chr6 184259002 184259250 -5020304 + L1MD3 LINE L1 6081 7995 0 423 269 90 60 chr6 184259706 184259974 -5019580 - L1M4 LINE L1 -2868 3278 3003 24 0 0 0 chr6 184260717 184260741 -5018813 + AT_rich Low_complexity Low_complexity 1 24 0 316 278 111 84 chr6 184261080 184261414 -5018140 + L2 LINE L2 2366 2708 -606 2270 174 19 42 chr6 184261430 184261921 -5017633 + MLT2B2 LTR ERVL 3 535 -19 262 93 19 37 chr6 184261983 184262037 -5017517 + MLT2B2 LTR ERVL 463 515 0 608 245 196 13 chr6 184262370 184262620 -5016934 - MLT1C LTR MaLR -19 486 283 1933 115 8 0 chr6 184262620 184262881 -5016673 - AluSc SINE Alu -7 302 40 608 245 196 13 chr6 184262881 184263019 -5016535 - MLT1C LTR MaLR -222 283 1 1517 247 6 0 chr6 184264061 184264413 -5015141 - MLT1A1 LTR MaLR -11 354 1 24 53 0 0 chr6 184264608 184264646 -5014908 + AT_rich Low_complexity Low_complexity 1 38 0 2231 90 3 13 chr6 184265614 184265913 -5013641 - AluSc SINE Alu -13 296 1 2503 173 50 72 chr6 184266037 184266732 -5012822 + L1MC3 LINE L1 7106 7785 0 29 28 0 0 chr6 184266805 184266841 -5012713 + AT_rich Low_complexity Low_complexity 1 36 0 4016 123 147 23 chr6 184266978 184268237 -5011317 + pTR5 LTR ERV1 343 2295 -143 339 358 52 26 chr6 184269227 184269420 -5010134 + L1MCb LINE L1 127 324 -5721 415 248 26 0 chr6 184270060 184270177 -5009377 + L1MCb LINE L1 944 1063 -4982 617 182 42 24 chr6 184270207 184270372 -5009182 + MLT1A2 LTR MaLR 19 186 -188 380 279 8 8 chr6 184270475 184270604 -5008950 + L1MCb LINE L1 2732 2860 -3704 666 241 88 22 chr6 184270792 184271020 -5008534 - MLT1D LTR MaLR -258 247 5 215 178 0 22 chr6 184271045 184271090 -5008464 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 181 234 64 0 chr6 184271544 184271591 -5007963 + MIR SINE MIR 127 176 -86 21 0 0 0 chr6 184272648 184272669 -5006885 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr6 184273281 184273324 -5006230 + AT_rich Low_complexity Low_complexity 1 43 0 1841 193 6 0 chr6 184273361 184273719 -5005835 - L1MA4A LINE L1 -1227 4919 4560 * 5612 162 26 21 chr6 184273712 184275085 -5004469 + L1MA4A LINE L1 4912 6296 -7 221 309 74 0 chr6 184275546 184275627 -5003927 + MIR SINE MIR 120 206 -56 21 0 0 0 chr6 184275692 184275713 -5003841 + AT_rich Low_complexity Low_complexity 1 21 0 2351 94 3 0 chr6 184276055 184276354 -5003200 - AluSp SINE Alu -13 300 1 1996 138 0 0 chr6 184276514 184276803 -5002751 - AluSx SINE Alu -21 291 3 560 281 34 60 chr6 184277840 184278099 -5001455 + L1MC4 LINE L1 5 221 -5824 * 6969 234 78 52 chr6 184278094 184279202 -5000352 + L1MC4 LINE L1 566 1645 -6580 1847 142 11 0 chr6 184279202 184279508 -5000046 + AluSx SINE Alu 1 309 0 6969 234 78 52 chr6 184279508 184283208 -4996346 + L1MC4 LINE L1 1645 5393 -2832 1500 216 10 3 chr6 184283208 184283504 -4996050 + AluJo SINE Alu 1 298 -14 6969 234 78 52 chr6 184283504 184285790 -4993764 + L1MC4 LINE L1 5393 7894 -331 2308 39 54 0 chr6 184285790 184286070 -4993484 - AluY SINE Alu -16 295 1 6969 234 78 52 chr6 184286070 184286410 -4993144 + L1MC4 LINE L1 7894 8224 -1 227 355 16 40 chr6 184287120 184287208 -4992346 + L2 LINE L2 2584 2670 -644 1611 241 3 3 chr6 184287208 184287573 -4991981 - MLT1A1 LTR MaLR 0 365 1 227 355 16 40 chr6 184287573 184287608 -4991946 + L2 LINE L2 2670 2704 -610 303 261 87 68 chr6 184287927 184288134 -4991420 + L2 LINE L2 3103 3313 0 2392 124 6 8 chr6 184288205 184288568 -4990986 - THE1B LTR MaLR -2 362 1 26 30 0 0 chr6 184289462 184289495 -4990059 + AT_rich Low_complexity Low_complexity 1 33 0 917 218 20 0 chr6 184289584 184289786 -4989768 + L1MB2 LINE L1 3623 3828 -2318 1275 172 72 23 chr6 184289786 184290077 -4989477 - MSTD LTR MaLR 0 396 75 1571 17 0 0 chr6 184290095 184290276 -4989278 - L1PA4 LINE L1 -3 6152 5972 369 178 27 0 chr6 184290423 184290496 -4989058 - MSTD LTR MaLR -353 75 1 3935 210 35 78 chr6 184290500 184291266 -4988288 + L1MB2 LINE L1 3828 4625 -1546 7236 87 25 1 chr6 184291266 184293035 -4986519 + L1PA7 LINE L1 4362 6151 -3 3935 210 35 78 chr6 184293035 184294074 -4985480 + L1MB2 LINE L1 4625 5489 -682 239 29 57 0 chr6 184294074 184294109 -4985445 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 3935 210 35 78 chr6 184294109 184294707 -4984847 + L1MB2 LINE L1 5489 6111 -60 255 295 20 7 chr6 184294975 184295124 -4984430 + L1M4 LINE L1 2265 2415 -3731 21 71 0 0 chr6 184295605 184295647 -4983907 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr6 184296396 184296419 -4983135 + AT_rich Low_complexity Low_complexity 1 23 0 219 69 0 0 chr6 184299016 184299045 -4980509 + (TG)n Simple_repeat Simple_repeat 1 29 0 474 293 145 74 chr6 184299138 184299973 -4979581 - L1M4 LINE L1 -2212 3934 3000 2200 37 44 7 chr6 184299973 184300283 -4979271 - AluY SINE Alu 0 320 1 474 293 145 74 chr6 184300283 184300552 -4979002 - L1M4 LINE L1 -3146 3000 2751 2078 148 0 0 chr6 184302625 184302928 -4976626 - AluSx SINE Alu -9 303 1 495 0 0 0 chr6 184303133 184303188 -4976366 + (TA)n Simple_repeat Simple_repeat 1 55 0 25 0 0 0 chr6 184304259 184304284 -4975270 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr6 184304436 184304457 -4975097 + (TG)n Simple_repeat Simple_repeat 1 21 0 434 293 29 23 chr6 184304513 184304687 -4974867 - MARNA DNA Mariner -321 265 91 1723 149 25 141 chr6 184305339 184305815 -4973739 - MSTB1 LTR MaLR -8 424 4 7712 183 14 66 chr6 184305818 184307557 -4971997 - MSTB-int LTR MaLR 0 1651 2 2005 210 31 2 chr6 184307559 184307973 -4971581 - MSTB LTR MaLR 0 426 1 341 55 36 0 chr6 184308637 184308692 -4970862 + (CTACT)n Simple_repeat Simple_repeat 1 57 0 18110 34 2 0 chr6 184308976 184311937 -4967617 - L1PA3 LINE L1 -3 6152 3188 6517 22 0 0 chr6 184311937 184312719 -4966835 + L1PA3 LINE L1 2390 3171 -2975 209 152 0 91 chr6 184312719 184312785 -4966769 + T-rich Low_complexity Low_complexity 1 60 0 327 49 0 0 chr6 184313528 184313569 -4965985 + (TTATA)n Simple_repeat Simple_repeat 2 42 0 318 233 105 79 chr6 184314862 184315167 -4964387 - L1MC5 LINE L1 -34 7927 7615 713 152 0 0 chr6 184315175 184315287 -4964267 - AluSg/x SINE Alu -9 303 192 670 220 63 132 chr6 184315318 184315716 -4963838 - L1MC5 LINE L1 -550 7411 7066 2014 135 0 28 chr6 184315716 184316034 -4963520 - AluSg1 SINE Alu 0 309 1 670 220 63 132 chr6 184316034 184316225 -4963329 - L1MC5 LINE L1 -895 7066 6863 412 183 191 9 chr6 184316243 184316358 -4963196 - L1ME3A LINE L1 -8 6162 6027 2111 136 0 0 chr6 184316439 184316734 -4962820 - AluSx SINE Alu -17 295 1 1623 178 112 30 chr6 184316762 184317128 -4962426 - MSTD LTR MaLR 0 396 1 28 0 0 0 chr6 184317520 184317548 -4962006 + AT_rich Low_complexity Low_complexity 1 28 0 7838 40 1 0 chr6 184318624 184320355 -4959199 - L1PA3 LINE L1 -3 6152 4421 11206 34 1 0 chr6 184320355 184321722 -4957832 + L1PA3 LINE L1 3039 4407 -1739 39 0 0 0 chr6 184322572 184322611 -4956943 + AT_rich Low_complexity Low_complexity 1 39 0 19220 147 38 33 chr6 184322763 184326277 -4953277 + ERVL-A2 LTR ERVL 2227 5756 -8 1705 177 63 30 chr6 184326280 184326813 -4952741 + MLT2A2 LTR ERVL 3 550 -4 2084 198 26 12 chr6 184326813 184327243 -4952311 + THE1C-int LTR MaLR 749 1184 -396 479 112 122 10 chr6 184327343 184327441 -4952113 + THE1C-int LTR MaLR 1543 1651 0 1700 150 66 41 chr6 184327441 184327807 -4951747 + THE1C LTR MaLR 1 375 0 344 370 33 19 chr6 184327927 184328138 -4951416 - L1MEd LINE L1 -5437 682 469 292 279 12 0 chr6 184328139 184328225 -4951329 + (TA)n Simple_repeat Simple_repeat 2 88 0 420 123 0 0 chr6 184328544 184328617 -4950937 + (CA)n Simple_repeat Simple_repeat 1 73 0 873 272 28 39 chr6 184328886 184329373 -4950181 + MLT1B LTR MaLR 1 465 -2 361 70 40 40 chr6 184329687 184329787 -4949767 + (TCTA)n Simple_repeat Simple_repeat 4 103 0 877 258 67 58 chr6 184329850 184330747 -4948807 + L1MEc LINE L1 1899 2777 -3438 246 32 0 0 chr6 184331182 184331213 -4948341 + (TG)n Simple_repeat Simple_repeat 2 32 0 338 254 47 71 chr6 184333534 184333703 -4945851 - MLT1I LTR MaLR -229 180 16 193 386 15 0 chr6 184333792 184333924 -4945630 - MIR SINE MIR 0 262 129 296 167 73 0 chr6 184335066 184335162 -4944392 + (CTGTG)n Simple_repeat Simple_repeat 3 105 0 42 0 0 0 chr6 184335324 184335366 -4944188 + AT_rich Low_complexity Low_complexity 1 42 0 7845 16 0 0 chr6 184335366 184336644 -4942910 - L1PA2 LINE L1 -1 6154 4877 278 220 10 60 chr6 184337507 184337607 -4941947 - MER58 DNA MER1_type -8 2412 2318 243 311 0 33 chr6 184337618 184337708 -4941846 - MER58 DNA MER1_type -2321 99 13 31 26 0 0 chr6 184338823 184338861 -4940693 + AT_rich Low_complexity Low_complexity 1 38 0 2507 59 3 3 chr6 184338926 184339231 -4940323 + AluY SINE Alu 1 305 -6 423 288 47 59 chr6 184340030 184340266 -4939288 + L2 LINE L2 3064 3296 -17 2615 172 55 55 chr6 184340308 184341024 -4938530 - L1MC2 LINE L1 -1 6623 5908 628 75 0 0 chr6 184341025 184341105 -4938449 - AluS SINE Alu -233 80 1 2117 225 80 38 chr6 184341105 184342068 -4937486 - L1MC2 LINE L1 -743 5683 4700 557 232 48 0 chr6 184342115 184342283 -4937271 - L1MC2 LINE L1 -2904 3522 3347 820 222 62 49 chr6 184342288 184342622 -4936932 + MSTD LTR MaLR 1 396 0 5819 240 75 24 chr6 184342624 184344271 -4935283 + MSTD-int LTR MaLR 2 1733 -2 1336 199 141 14 chr6 184344273 184344620 -4934934 + MSTD LTR MaLR 1 391 -5 5738 210 71 95 chr6 184344623 184345711 -4933843 - L1MC2 LINE L1 -3078 3348 2235 1954 144 0 7 chr6 184345711 184346135 -4933419 - AluSx SINE Alu 0 422 1 5738 210 71 95 chr6 184346135 184348450 -4931104 - L1MC2 LINE L1 -4191 2235 26 21 57 0 0 chr6 184348647 184348682 -4930872 + AT_rich Low_complexity Low_complexity 1 35 0 219 271 30 23 chr6 184348690 184348823 -4930731 + (TA)n Simple_repeat Simple_repeat 2 135 0 245 305 171 18 chr6 184348977 184349141 -4930413 + MIR SINE MIR 15 203 -59 218 374 0 0 chr6 184349334 184349433 -4930121 + L2 LINE L2 2217 2315 -999 325 299 76 27 chr6 184349490 184349791 -4929763 + L1ME LINE L1 5458 5773 -348 5897 125 206 62 chr6 184350690 184352172 -4927382 - pTR5 LTR ERV1 0 2438 743 252 386 23 0 chr6 184352208 184352340 -4927214 - MIR SINE MIR -108 154 20 2644 99 10 5 chr6 184352476 184352878 -4926676 + MLT2A1 LTR ERVL 1 404 -40 236 210 48 0 chr6 184352879 184352941 -4926613 + (TA)n Simple_repeat Simple_repeat 1 65 0 302 261 11 22 chr6 184352941 184353033 -4926521 - L1MC4 LINE L1 -1338 6704 6614 346 241 35 0 chr6 184353033 184353120 -4926434 - L1MC4 LINE L1 -1339 6703 6614 336 274 0 32 chr6 184353040 184353135 -4926419 + L1MC4 LINE L1 6612 6703 -1339 * 309 208 13 26 chr6 184353153 184353230 -4926324 + L1MCa LINE L1 1995 2070 -4356 241 106 43 0 chr6 184353263 184353310 -4926244 + L1MCa LINE L1 2005 2053 -4373 574 232 12 0 chr6 184353317 184353481 -4926073 + (TA)n Simple_repeat Simple_repeat 2 167 0 180 230 27 14 chr6 184353470 184353544 -4926010 + (TATG)n Simple_repeat Simple_repeat 2 76 0 * 303 256 58 12 chr6 184353544 184353630 -4925924 - L1MC4 LINE L1 -1339 6703 6614 626 211 23 0 chr6 184353637 184353812 -4925742 + (TA)n Simple_repeat Simple_repeat 2 180 0 318 221 15 0 chr6 184353824 184353892 -4925662 - L1MCa LINE L1 -4363 2063 1995 * 354 258 11 0 chr6 184353886 184353975 -4925579 - L1MC4 LINE L1 -1339 6703 6614 372 276 0 0 chr6 184353976 184354103 -4925451 + (TA)n Simple_repeat Simple_repeat 2 128 0 312 313 0 30 chr6 184354155 184354286 -4925268 + (TATATG)n Simple_repeat Simple_repeat 1 127 0 285 197 0 0 chr6 184354494 184354555 -4924999 + (TA)n Simple_repeat Simple_repeat 2 62 0 299 70 0 0 chr6 184354561 184354604 -4924950 + MLT2A1 LTR ERVL 390 432 -12 231 261 0 22 chr6 184354607 184354699 -4924855 + L1MC4 LINE L1 6614 6703 -1339 350 91 0 0 chr6 184354716 184354771 -4924783 + MLT2A1 LTR ERVL 390 444 0 287 335 123 6 chr6 184355354 184355533 -4924021 + MIR SINE MIR 58 257 -5 299 286 21 14 chr6 184355564 184355709 -4923845 - MIR SINE MIR -40 222 80 25 0 0 0 chr6 184357216 184357241 -4922313 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr6 184358253 184358295 -4921259 + AT_rich Low_complexity Low_complexity 1 42 0 258 188 39 19 chr6 184359035 184359189 -4920365 + (TG)n Simple_repeat Simple_repeat 1 157 0 397 163 37 30 chr6 184359205 184359716 -4919838 + (TG)n Simple_repeat Simple_repeat 1 514 0 381 156 43 23 chr6 184359741 184359997 -4919557 + (TG)n Simple_repeat Simple_repeat 1 261 0 1546 174 27 0 chr6 184361735 184361831 -4917723 + AluJb SINE Alu 28 120 -192 315 0 0 0 chr6 184361831 184361866 -4917688 + (CA)n Simple_repeat Simple_repeat 2 36 0 1546 174 27 0 chr6 184361866 184362027 -4917527 + AluJb SINE Alu 120 292 -20 26 0 0 0 chr6 184362189 184362215 -4917339 + AT_rich Low_complexity Low_complexity 1 26 0 625 320 91 64 chr6 184362280 184362371 -4917183 - L1ME3A LINE L1 -286 5884 5797 1736 76 0 13 chr6 184362371 184362596 -4916958 - AluY SINE Alu -88 223 2 625 320 91 64 chr6 184362596 184363733 -4915821 - L1ME3A LINE L1 -373 5797 4619 258 297 20 10 chr6 184363806 184363907 -4915647 - L1ME3A LINE L1 -1984 4162 4061 476 334 96 16 chr6 184364053 184364427 -4915127 - L1ME3A LINE L1 -2271 3875 3472 253 286 33 22 chr6 184364822 184365004 -4914550 - L1ME3A LINE L1 -2680 3466 3283 32 26 0 0 chr6 184365151 184365190 -4914364 + AT_rich Low_complexity Low_complexity 1 39 0 2271 70 0 23 chr6 184365205 184365504 -4914050 - AluY SINE Alu -19 292 1 2268 99 0 3 chr6 184365611 184365904 -4913650 - AluSc SINE Alu -17 292 1 3771 248 111 43 chr6 184366233 184368529 -4911025 + L1M3e LINE L1 335 2769 -4338 28 48 0 0 chr6 184368589 184368631 -4910923 + AT_rich Low_complexity Low_complexity 1 42 0 216 0 0 0 chr6 184370466 184370490 -4909064 + (CA)n Simple_repeat Simple_repeat 2 25 0 209 192 67 87 chr6 184370580 184370684 -4908870 - L2 LINE L2 -34 3238 3137 341 215 13 0 chr6 184371078 184371157 -4908397 + LTR16C LTR ERVL 314 393 -98 333 351 124 24 chr6 184371229 184371808 -4907746 - L2 LINE L2 -739 2575 1939 2335 243 49 38 chr6 184375107 184375392 -4904162 - L1MEc LINE L1 -1511 4704 4424 1011 243 17 17 chr6 184375392 184375631 -4903923 + MER8 DNA MER2_type 1 239 0 2335 243 49 38 chr6 184375631 184376379 -4903175 - L1MEc LINE L1 -1791 4424 3659 1000 229 52 16 chr6 184376393 184376857 -4902697 - L1MEc LINE L1 -3677 2538 2100 495 270 9 13 chr6 184376872 184377102 -4902452 - L1MEc LINE L1 -4736 1660 1432 * 1034 259 12 82 chr6 184377089 184377580 -4901974 - L1MEc LINE L1 -5894 502 46 408 290 168 30 chr6 184377920 184378408 -4901146 - MLT1G3 LTR MaLR 0 595 2 196 358 30 0 chr6 184379196 184379263 -4900291 + L2 LINE L2 3203 3271 -1 566 278 183 16 chr6 184379832 184380264 -4899290 + L1ME4a LINE L1 5618 6121 0 25 31 0 0 chr6 184380704 184380736 -4898818 + AT_rich Low_complexity Low_complexity 1 32 0 2609 116 3 0 chr6 184380794 184381157 -4898397 + THE1B LTR MaLR 1 364 0 187 292 0 0 chr6 184384219 184384267 -4895287 + L2 LINE L2 3192 3239 -74 457 157 26 78 chr6 184384859 184384974 -4894580 + MER5A DNA MER1_type 4 112 -77 2326 84 7 13 chr6 184385693 184386003 -4893551 - AluSc SINE Alu -1 308 1 210 282 128 0 chr6 184386963 184387041 -4892513 - L2 LINE L2 -3 3310 3223 1029 165 6 6 chr6 184387681 184388049 -4891505 + (TGGA)n Simple_repeat Simple_repeat 1 368 0 209 267 203 27 chr6 184390212 184390399 -4889155 + L2 LINE L2 1942 2161 -1153 222 156 22 0 chr6 184391201 184391246 -4888308 + T-rich Low_complexity Low_complexity 3 48 0 298 235 25 0 chr6 184391252 184391333 -4888221 + HsTC2 DNA Tc2 1789 1871 -27 355 291 46 33 chr6 184391397 184391548 -4888006 - L1MC4 LINE L1 -194 7848 7696 32 0 0 0 chr6 184391650 184391682 -4887872 + AT_rich Low_complexity Low_complexity 1 32 0 254 276 11 0 chr6 184391739 184391826 -4887728 - L1MB8 LINE L1 -6 6172 6085 223 222 16 32 chr6 184391947 184392010 -4887544 + (CAGAGA)n Simple_repeat Simple_repeat 4 65 0 868 182 73 18 chr6 184392012 184392044 -4887510 - MLT2B3 LTR ERVL -8 546 517 432 0 0 0 chr6 184392044 184392092 -4887462 + (TA)n Simple_repeat Simple_repeat 2 49 0 868 182 73 18 chr6 184392092 184392398 -4887156 - MLT2B3 LTR ERVL -37 517 186 1259 143 24 0 chr6 184392398 184392607 -4886947 - AluSc SINE Alu -7 302 89 367 123 151 0 chr6 184392607 184392680 -4886874 - MLT2B3 LTR ERVL -256 197 114 1369 124 16 0 chr6 184392799 184392993 -4886561 - AluSc SINE Alu -24 285 89 1278 71 60 0 chr6 184392993 184393177 -4886377 - MLT2A2 LTR ERVL -256 197 3 303 121 0 0 chr6 184393177 184393235 -4886319 + (GA)n Simple_repeat Simple_repeat 1 58 0 235 238 38 25 chr6 184393254 184393334 -4886220 - MLT1K LTR MaLR -157 431 351 388 298 40 0 chr6 184393444 184393595 -4885959 - MLT1K LTR MaLR -410 178 22 953 264 0 0 chr6 184393637 184393853 -4885701 - MER58A DNA MER1_type -8 216 1 1615 177 119 3 chr6 184393873 184394200 -4885354 + MLT1A1 LTR MaLR 1 365 0 914 200 84 105 chr6 184395061 184395431 -4884123 - MER57A LTR ERV1 0 403 42 1832 191 77 15 chr6 184395452 184395855 -4883699 + MSTA LTR MaLR 1 428 0 5777 163 16 109 chr6 184395856 184397655 -4881899 + MSTA-int LTR MaLR 2 1580 0 1750 190 99 0 chr6 184397655 184398039 -4881515 + MSTA LTR MaLR 1 422 -6 1931 145 40 32 chr6 184398614 184398986 -4880568 + THE1C LTR MaLR 1 375 0 306 245 66 0 chr6 184399339 184399445 -4880109 - MER103 DNA DNA -46 120 8 2052 129 3 7 chr6 184399889 184400191 -4879363 + AluSx SINE Alu 1 301 -11 3525 184 31 52 chr6 184402318 184403439 -4876115 + L1MB5 LINE L1 5069 6165 -9 1940 218 57 5 chr6 184404114 184404147 -4875407 - MLT2C2 LTR ERVL 0 464 434 267 79 0 0 chr6 184404147 184404185 -4875369 + (TG)n Simple_repeat Simple_repeat 2 39 0 1940 218 57 5 chr6 184404185 184404592 -4874962 - MLT2C2 LTR ERVL -30 434 1 278 253 60 0 chr6 184404597 184404680 -4874874 + MLT1J LTR MaLR 345 432 -79 2493 137 31 12 chr6 184406163 184406585 -4872969 + MSTB1 LTR MaLR 3 432 0 794 256 159 22 chr6 184406869 184407315 -4872239 - LTR33 LTR ERVL -1 520 14 350 236 35 6 chr6 184409380 184409554 -4870000 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 22 70 0 0 chr6 184409573 184409616 -4869938 + AT_rich Low_complexity Low_complexity 1 43 0 1052 263 20 51 chr6 184409617 184409830 -4869724 - L1M4 LINE L1 -2437 4207 3989 664 151 118 0 chr6 184409830 184409949 -4869605 - FLAM_C SINE Alu 0 133 1 1052 263 20 51 chr6 184409949 184410241 -4869313 - L1M4 LINE L1 -2655 3989 3718 744 75 0 0 chr6 184410303 184410409 -4869145 - AluY SINE Alu -1 310 205 1973 227 83 101 chr6 184410409 184411931 -4867623 - L1M4 LINE L1 -4559 2087 581 744 299 102 4 chr6 184412047 184412605 -4866949 + L1ME3A LINE L1 3368 3980 -2166 233 211 18 0 chr6 184412805 184412862 -4866692 - L1M4 LINE L1 -4843 1699 1642 1861 261 215 37 chr6 184413537 184414765 -4864789 + L1MC4 LINE L1 6459 7905 -137 553 258 105 60 chr6 184415122 184415419 -4864135 + L1ME3A LINE L1 4744 5073 -1073 843 241 10 0 chr6 184415419 184415626 -4863928 + MER3 DNA MER1_type 1 209 0 553 258 105 60 chr6 184415626 184415812 -4863742 + L1ME3A LINE L1 5073 5249 -897 760 280 128 20 chr6 184415876 184416437 -4863117 + L1ME3A LINE L1 5321 5942 -228 2406 56 0 47 chr6 184418344 184418665 -4860889 - AluY SINE Alu -5 306 1 23 33 0 0 chr6 184419333 184419363 -4860191 + AT_rich Low_complexity Low_complexity 1 30 0 312 111 0 0 chr6 184419981 184420035 -4859519 + (GA)n Simple_repeat Simple_repeat 1 54 0 287 284 35 85 chr6 184420524 184420725 -4858829 - L2 LINE L2 -14 3299 3109 1662 188 23 35 chr6 184421217 184421611 -4857943 + MLT1B LTR MaLR 1 389 -1 462 318 83 12 chr6 184421706 184422033 -4857521 + LTR16A1 LTR ERVL 60 409 -48 503 195 88 11 chr6 184422556 184422716 -4856838 - L1MC4 LINE L1 -1114 6918 6679 1773 96 0 0 chr6 184422792 184423041 -4856513 - THE1C LTR MaLR -126 249 1 8770 124 17 17 chr6 184423041 184424608 -4854946 - THE1C-int LTR MaLR 0 1580 1 2579 123 3 3 chr6 184424608 184424983 -4854571 - THE1C LTR MaLR 0 375 1 2086 198 41 63 chr6 184425001 184425608 -4853946 - LTR9 LTR ERV1 -18 594 1 27 0 0 0 chr6 184426242 184426269 -4853285 + AT_rich Low_complexity Low_complexity 1 27 0 381 198 0 0 chr6 184427028 184427109 -4852445 + (TG)n Simple_repeat Simple_repeat 2 82 0 196 326 77 54 chr6 184427576 184427837 -4851717 - L2 LINE L2 -6 3307 3041 2043 95 48 0 chr6 184428918 184429213 -4850341 + AluSp SINE Alu 1 308 0 1961 173 111 8 chr6 184429275 184429663 -4849891 - MSTA LTR MaLR 0 428 1 1823 171 0 7 chr6 184430194 184430487 -4849067 + AluJb SINE Alu 1 291 -21 308 165 89 13 chr6 184430819 184430898 -4848656 - L1MC1 LINE L1 0 6333 6249 300 205 179 0 chr6 184431085 184431202 -4848352 + L1MD3 LINE L1 4809 4946 -1200 398 176 12 0 chr6 184431208 184431293 -4848261 + GA-rich Low_complexity Low_complexity 2 87 0 1183 232 62 53 chr6 184431338 184432191 -4847363 + L1MD3 LINE L1 4987 5901 -279 211 250 0 0 chr6 184435364 184435408 -4844146 - L2 LINE L2 -3 3310 3267 766 303 74 19 chr6 184436160 184436484 -4843070 - L3 LINE CR1 -5 1572 1231 450 261 70 19 chr6 184436926 184437083 -4842471 - MIR SINE MIR 0 262 98 2472 103 11 19 chr6 184438609 184438976 -4840578 - THE1B LTR MaLR 0 364 1 755 255 59 31 chr6 184439080 184439385 -4840169 - MLT2B1 LTR ERVL -56 464 120 837 273 72 23 chr6 184439385 184439733 -4839821 + MLT1A1 LTR MaLR 1 365 0 588 197 8 0 chr6 184439734 184439856 -4839698 - MLT2B2 LTR ERVL -392 123 1 224 160 0 20 chr6 184439954 184440004 -4839550 + T-rich Low_complexity Low_complexity 1 49 0 229 333 149 31 chr6 184440161 184440389 -4839165 - L2 LINE L2 -49 3264 3010 3503 185 86 13 chr6 184440395 184441427 -4838127 + L1MB7 LINE L1 5066 6166 -18 2373 134 19 5 chr6 184441929 184442301 -4837253 - MER51B LTR ERV1 0 377 1 241 254 14 0 chr6 184442547 184442618 -4836936 + L1MB8 LINE L1 6080 6151 -27 2180 75 0 0 chr6 184442636 184442942 -4836612 + L1PA8 LINE L1 5757 6062 -110 1399 147 13 108 chr6 184442942 184443329 -4836225 - LTR46 LTR ERV1 -110 350 1 216 248 108 70 chr6 184443610 184443739 -4835815 + MIR SINE MIR 21 154 -108 993 223 97 23 chr6 184444009 184444309 -4835245 + MER2 DNA MER2_type 24 345 0 28 48 0 0 chr6 184444309 184444351 -4835203 + AT_rich Low_complexity Low_complexity 1 42 0 237 252 36 45 chr6 184445320 184445431 -4834123 + MIR SINE MIR 83 192 -70 543 282 109 20 chr6 184445534 184445927 -4833627 - MLT1E2 LTR MaLR -124 502 75 1921 148 10 0 chr6 184446555 184446846 -4832708 - AluSx SINE Alu -17 295 2 192 40 0 0 chr6 184447184 184447209 -4832345 + (CA)n Simple_repeat Simple_repeat 2 26 0 338 212 0 0 chr6 184447404 184447470 -4832084 + MER54B LTR ERVL 701 766 -27 180 0 0 0 chr6 184447503 184447523 -4832031 + (CAA)n Simple_repeat Simple_repeat 2 21 0 401 299 49 35 chr6 184448552 184448774 -4830780 + HAL1b LINE L1 68 238 -1110 1947 134 24 14 chr6 184448845 184449135 -4830419 - AluJb SINE Alu -19 293 1 2447 83 0 6 chr6 184449461 184449774 -4829780 - AluY SINE Alu 0 311 1 24 32 0 0 chr6 184449932 184449963 -4829591 + AT_rich Low_complexity Low_complexity 1 31 0 21 95 0 0 chr6 184450583 184450646 -4828908 + AT_rich Low_complexity Low_complexity 1 63 0 447 335 81 16 chr6 184452056 184452241 -4827313 + L2 LINE L2 2228 2424 -890 180 259 0 69 chr6 184452313 184452371 -4827183 - MIR SINE MIR -121 87 34 2097 122 16 48 chr6 184452557 184452933 -4826621 + THE1B LTR MaLR 1 364 0 314 340 87 52 chr6 184453181 184453490 -4826064 + L2 LINE L2 2953 3272 0 1092 143 59 0 chr6 184454212 184454415 -4825139 + L1PB4 LINE L1 5942 6156 0 213 121 0 0 chr6 184454647 184454680 -4824874 + (T)n Simple_repeat Simple_repeat 1 33 0 329 161 18 0 chr6 184454687 184454743 -4824811 - MER58A DNA MER1_type -19 88 32 24 32 0 0 chr6 184454880 184454911 -4824643 + AT_rich Low_complexity Low_complexity 1 31 0 22810 159 15 14 chr6 184454917 184460450 -4819104 - L1PA10 LINE L1 -19 6464 901 1509 212 26 3 chr6 184460470 184460809 -4818745 - L1PA10 LINE L1 -5525 350 4 654 276 36 48 chr6 184461214 184461464 -4818090 - MIR SINE MIR -13 249 3 230 254 173 0 chr6 184462980 184463090 -4816464 - MLT1L LTR MaLR -135 480 352 21 82 0 0 chr6 184464161 184464210 -4815344 + AT_rich Low_complexity Low_complexity 1 49 0 1996 119 14 14 chr6 184464413 184464708 -4814846 - AluSx SINE Alu -17 295 1 318 87 0 0 chr6 184464795 184464841 -4814713 + (GA)n Simple_repeat Simple_repeat 1 46 0 241 336 88 9 chr6 184465069 184465182 -4814372 - MIR SINE MIR -55 153 32 1900 138 10 7 chr6 184466554 184466675 -4812879 + AluSg SINE Alu 1 120 -190 194 0 39 0 chr6 184466675 184466701 -4812853 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1900 138 10 7 chr6 184466701 184466876 -4812678 + AluSg SINE Alu 120 298 -12 268 211 0 0 chr6 184467334 184467391 -4812163 + (TGG)n Simple_repeat Simple_repeat 3 59 0 279 0 0 0 chr6 184467399 184467430 -4812124 + (TG)n Simple_repeat Simple_repeat 2 32 0 2182 134 0 0 chr6 184467569 184467868 -4811686 + AluSx SINE Alu 3 301 -11 392 265 17 17 chr6 184469644 184469761 -4809793 - MIR SINE MIR -102 160 44 608 252 165 10 chr6 184470370 184470679 -4808875 + L1M4 LINE L1 4613 4969 -1177 396 98 12 24 chr6 184470836 184470918 -4808636 + (GA)n Simple_repeat Simple_repeat 1 81 0 191 290 130 0 chr6 184470956 184471025 -4808529 - L2 LINE L2 -89 3183 3106 5110 172 27 26 chr6 184471282 184472433 -4807121 - L1MC1 LINE L1 -1 6332 5182 190 160 40 0 chr6 184472972 184473022 -4806532 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 276 364 15 15 chr6 184473084 184473216 -4806338 - MIR3 SINE MIR -49 159 28 355 106 30 0 chr6 184473267 184473333 -4806221 + CT-rich Low_complexity Low_complexity 2 69 0 588 217 0 0 chr6 184473342 184473448 -4806106 - FRAM SINE Alu -25 151 46 23 0 0 0 chr6 184475018 184475041 -4804513 + AT_rich Low_complexity Low_complexity 1 23 0 486 234 40 40 chr6 184475134 184475258 -4804296 + MER5B DNA MER1_type 1 124 -54 1270 144 0 15 chr6 184475259 184475454 -4804100 - AluSg/x SINE Alu -22 288 97 217 290 68 91 chr6 184476151 184476403 -4803151 + L2 LINE L2 2839 3084 -188 193 146 0 36 chr6 184476423 184476478 -4803076 + (TA)n Simple_repeat Simple_repeat 1 53 0 1136 209 103 49 chr6 184476590 184476940 -4802614 + MLT1B LTR MaLR 1 369 -21 1816 197 60 86 chr6 184477080 184477613 -4801941 - MLT2B1 LTR ERVL 0 520 2 2164 159 0 0 chr6 184477736 184478070 -4801484 - MER7A DNA MER2_type -14 332 1 38 0 0 0 chr6 184478578 184478616 -4800938 + AT_rich Low_complexity Low_complexity 1 38 0 1648 42 0 0 chr6 184478616 184478807 -4800747 - L1PA4 LINE L1 -3 6152 5962 199 208 57 0 chr6 184479715 184479768 -4799786 - L2 LINE L2 -3 3269 3214 1298 153 14 9 chr6 184480319 184480542 -4799012 - AluJo SINE Alu -3 309 86 629 299 173 23 chr6 184481171 184481378 -4798176 + L2 LINE L2 2513 2688 -625 2407 142 8 21 chr6 184481378 184481758 -4797796 - THE1C LTR MaLR 0 375 1 629 299 173 23 chr6 184481758 184482210 -4797344 + L2 LINE L2 2688 3274 -39 473 254 127 37 chr6 184482236 184482425 -4797129 - MIR SINE MIR -44 218 13 2614 197 52 6 chr6 184482455 184483094 -4796460 + L1MA7 LINE L1 5554 6252 -39 1668 169 43 8 chr6 184483098 184483421 -4796133 - Tigger3(Golem) DNA MER2_type -1 3028 61 1975 157 71 55 chr6 184483716 184484137 -4795417 + MSTA LTR MaLR 1 428 0 10199 166 18 10 chr6 184484137 184485775 -4793779 + MSTA-int LTR MaLR 1 1651 0 2341 148 107 5 chr6 184485780 184486165 -4793389 + MSTA LTR MaLR 5 428 0 26 30 0 0 chr6 184486468 184486501 -4793053 + AT_rich Low_complexity Low_complexity 1 33 0 515 286 94 31 chr6 184486716 184486853 -4792701 + L2 LINE L2 3076 3234 -79 207 0 0 0 chr6 184486853 184486876 -4792678 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 515 286 94 31 chr6 184486876 184486962 -4792592 + L2 LINE L2 3234 3313 0 254 190 13 101 chr6 184487476 184487555 -4791999 - L2 LINE L2 -17 3255 3184 381 258 83 0 chr6 184487763 184487883 -4791671 - L1MCa LINE L1 -4866 2075 1946 1389 209 51 6 chr6 184487895 184488210 -4791344 - L1MCa LINE L1 -5084 1339 1011 1426 202 62 71 chr6 184488234 184488670 -4790884 - MLT1C LTR MaLR -2 465 34 444 294 162 42 chr6 184488690 184488999 -4790555 - L1MCa LINE L1 -5423 1000 655 1206 290 49 28 chr6 184489050 184489581 -4789973 - L1MCa LINE L1 -5858 565 24 2200 113 61 28 chr6 184490965 184491327 -4788227 + THE1C LTR MaLR 2 375 0 2107 218 40 2 chr6 184491615 184492060 -4787494 - MER88 LTR ERVL 0 464 3 2420 78 0 0 chr6 184492064 184492358 -4787196 - AluY SINE Alu -17 294 1 339 362 20 7 chr6 184492916 184493065 -4786489 + MER5A DNA MER1_type 7 157 -32 211 268 42 14 chr6 184493062 184493133 -4786421 + MIR3 SINE MIR 93 165 -43 * 525 285 145 0 chr6 184493170 184493377 -4786177 + MLT1D LTR MaLR 269 505 0 323 252 111 7 chr6 184493437 184493572 -4785982 + L1ME1 LINE L1 55 203 -6193 204 135 0 0 chr6 184494038 184494075 -4785479 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1444 259 157 39 chr6 184494076 184494590 -4784964 + L1ME1 LINE L1 678 1130 -5085 2315 106 0 0 chr6 184494590 184494892 -4784662 + AluSx SINE Alu 1 302 -10 1444 259 157 39 chr6 184494892 184495864 -4783690 + L1ME1 LINE L1 1130 2396 -3819 * 2795 37 0 0 chr6 184495863 184496246 -4783308 - L1PA6 LINE L1 -721 5433 5051 5937 61 24 0 chr6 184496246 184496954 -4782600 + L1PA6 LINE L1 5429 6154 0 372 256 22 29 chr6 184496954 184497091 -4782463 + L1ME1 LINE L1 2387 2522 -3693 * 1969 227 67 66 chr6 184497090 184498030 -4781524 + L1ME1 LINE L1 5260 6200 -35 335 255 73 57 chr6 184501135 184501327 -4778227 + MER117 DNA MER1_type 1 195 -2 409 287 116 6 chr6 184501400 184501581 -4777973 + L1ME LINE L1 5497 5697 -424 2190 66 0 11 chr6 184503243 184503514 -4776040 + AluY SINE Alu 32 299 -12 5146 171 26 30 chr6 184503600 184505520 -4774034 + L1PB4 LINE L1 4242 6154 -2 569 179 77 8 chr6 184505889 184506006 -4773548 - THE1C LTR MaLR 0 375 251 938 88 0 0 chr6 184506006 184506131 -4773423 - THE1B-int LTR MaLR -1237 343 219 1614 137 95 19 chr6 184506132 184506394 -4773160 - THE1B LTR MaLR -82 282 1 12229 99 14 0 chr6 184506394 184507953 -4771601 - THE1B-int LTR MaLR 0 1580 1 2283 128 50 39 chr6 184507953 184508313 -4771241 - THE1B LTR MaLR 0 364 1 2624 234 74 23 chr6 184508412 184509175 -4770379 + L1ME1 LINE L1 5366 6330 -4 387 0 0 0 chr6 184509530 184509573 -4769981 + (A)n Simple_repeat Simple_repeat 1 43 0 352 356 28 6 chr6 184514173 184514353 -4765201 + L2 LINE L2 2593 2776 -538 803 157 14 2 chr6 184514440 184514656 -4764898 + AluJb SINE Alu 5 273 -39 215 130 0 43 chr6 184514661 184514707 -4764847 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 328 314 57 61 chr6 184514843 184515072 -4764482 + L2 LINE L2 3077 3304 -9 319 307 22 62 chr6 184516520 184516699 -4762855 - L2 LINE L2 -1 3312 3141 2371 88 0 0 chr6 184516704 184517001 -4762553 - AluY SINE Alu -14 297 1 1453 208 108 12 chr6 184518101 184518433 -4761121 - MLT1A1 LTR MaLR -1 364 1 1124 234 57 78 chr6 184518547 184518970 -4760584 + MLT2D LTR ERVL 1 414 0 736 339 62 11 chr6 184519565 184519937 -4759617 + L2 LINE L2 1609 1999 -1315 387 216 20 10 chr6 184519949 184520051 -4759503 + MER20 DNA MER1_type 23 125 -94 944 300 120 57 chr6 184520131 184520864 -4758690 + L2 LINE L2 2056 2834 -480 1130 300 100 20 chr6 184520894 184521384 -4758170 + MLT1H LTR MaLR 3 531 -18 36 102 0 0 chr6 184524966 184525093 -4754461 + AT_rich Low_complexity Low_complexity 1 127 0 258 306 61 31 chr6 184525548 184525646 -4753908 - L2 LINE L2 -5 3267 3168 1848 140 73 32 chr6 184525762 184526105 -4753449 + THE1B LTR MaLR 1 357 -7 186 43 0 0 chr6 184526802 184526825 -4752729 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 1542 213 36 8 chr6 184526953 184527343 -4752211 - L1MB8 LINE L1 0 6178 5778 548 186 17 0 chr6 184527346 184527464 -4752090 - L1MB8 LINE L1 -442 5742 5623 691 253 24 30 chr6 184527464 184527822 -4751732 + MSTD LTR MaLR 1 396 0 1679 182 31 21 chr6 184527822 184528480 -4751074 - L1MB8 LINE L1 -557 5627 4883 3062 174 33 45 chr6 184528508 184529215 -4750339 + L1 LINE L1 3929 4628 -1518 3629 54 0 9 chr6 184529215 184529676 -4749878 + L1PA7 LINE L1 5698 6154 0 3062 174 33 45 chr6 184529676 184529749 -4749805 + L1 LINE L1 4628 4700 -1446 2487 216 83 32 chr6 184529747 184530821 -4748733 - L1M LINE L1 -743 5403 4282 * 271 214 51 20 chr6 184530823 184530921 -4748633 + L1M4 LINE L1 4142 4242 -1904 22 0 0 0 chr6 184530931 184530953 -4748601 + AT_rich Low_complexity Low_complexity 1 22 0 2279 101 10 0 chr6 184531809 184532105 -4747449 - AluSc SINE Alu -10 299 1 2289 115 3 0 chr6 184533351 184533656 -4745898 - AluSx SINE Alu -6 306 1 2669 188 35 8 chr6 184534564 184535357 -4744197 - MER6 DNA MER2_type 0 865 1 2157 187 21 7 chr6 184535821 184536249 -4743305 + Tigger2a DNA MER2_type 1 434 0 677 228 244 7 chr6 184537604 184537907 -4741647 - MLT1F1 LTR MaLR 0 567 193 303 122 0 0 chr6 184537909 184537958 -4741596 + (TG)n Simple_repeat Simple_repeat 1 49 0 335 216 27 0 chr6 184537958 184538043 -4741511 - MLT1F1 LTR MaLR -342 200 114 976 179 36 141 chr6 184539578 184539692 -4739862 + THE1C LTR MaLR 1 125 -250 2464 72 0 3 chr6 184539692 184539999 -4739555 - AluY SINE Alu -5 306 1 976 179 36 141 chr6 184539999 184540302 -4739252 + THE1C LTR MaLR 125 374 -1 474 279 127 0 chr6 184540680 184540809 -4738745 + MIR SINE MIR 3 114 -148 487 75 38 0 chr6 184540809 184540889 -4738665 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 474 279 127 0 chr6 184540889 184540988 -4738566 + MIR SINE MIR 114 260 -2 8464 208 14 6 chr6 184541024 184543739 -4735815 - L1PA15 LINE L1 0 6165 3439 230 278 0 37 chr6 184543904 184544012 -4735542 + L1M4 LINE L1 4560 4663 -1483 182 292 62 0 chr6 184546363 184546411 -4733143 - L2 LINE L2 -111 3161 3111 187 359 54 0 chr6 184547993 184548085 -4731469 - L2 LINE L2 -20 3293 3197 22 0 0 0 chr6 184548406 184548428 -4731126 + AT_rich Low_complexity Low_complexity 1 22 0 192 256 128 12 chr6 184548829 184548915 -4730639 - MIR SINE MIR -49 213 118 1255 162 92 25 chr6 184548915 184549199 -4730355 - LTR32 LTR ERVL 0 471 169 351 0 0 0 chr6 184549209 184549248 -4730306 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7726 21 0 0 chr6 184549254 184550336 -4729218 - L1PA3 LINE L1 -8 6147 5066 6985 20 0 0 chr6 184550336 184551184 -4728370 + L1P LINE L1 4145 4992 -1154 492 258 33 20 chr6 184551184 184551335 -4728219 - LTR32 LTR ERVL -304 167 15 258 197 106 0 chr6 184551446 184551512 -4728042 + MER94 DNA DNA 1 73 -61 270 0 0 0 chr6 184551659 184551689 -4727865 + (CA)n Simple_repeat Simple_repeat 1 30 0 254 281 0 0 chr6 184551703 184551792 -4727762 + L1MC4 LINE L1 6615 6703 -1339 400 365 15 0 chr6 184551795 184551932 -4727622 + (CATA)n Simple_repeat Simple_repeat 3 141 0 2081 127 0 0 chr6 184551932 184552223 -4727331 - AluSg1 SINE Alu -18 291 1 1625 124 0 13 chr6 184552303 184552395 -4727159 - AluSc SINE Alu -86 223 131 2379 100 0 0 chr6 184552395 184552704 -4726850 - AluSg SINE Alu 0 310 2 1625 124 0 13 chr6 184552704 184552837 -4726717 - AluSc SINE Alu -178 131 1 1816 158 52 0 chr6 184553314 184553644 -4725910 - MER7A DNA MER2_type -1 345 1 1330 224 82 52 chr6 184553931 184554012 -4725542 + MER65B LTR ERV1 1 78 -453 189 0 0 0 chr6 184554012 184554033 -4725521 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 258 81 0 0 chr6 184554032 184554069 -4725485 + (CA)n Simple_repeat Simple_repeat 1 37 0 1330 224 82 52 chr6 184554033 184554501 -4725053 + MER65B LTR ERV1 78 529 -2 2973 199 7 67 chr6 184554770 184555440 -4724114 + LTR8 LTR ERV1 1 625 -66 2322 126 31 14 chr6 184555440 184555798 -4723756 - THE1B LTR MaLR 0 364 1 2973 199 7 67 chr6 184555798 184555862 -4723692 + LTR8 LTR ERV1 625 691 0 1278 282 57 44 chr6 184557096 184557936 -4721618 - L1ME1 LINE L1 -4 6162 5312 719 212 111 0 chr6 184557936 184558134 -4721420 + MER63 DNA MER1_type 464 683 -377 337 310 62 7 chr6 184558219 184558364 -4721190 + L1MC4a LINE L1 5718 5870 -1938 23 0 0 0 chr6 184558449 184558472 -4721082 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr6 184558612 184558638 -4720916 + AT_rich Low_complexity Low_complexity 1 26 0 4024 179 15 48 chr6 184559405 184560416 -4719138 + L1M2 LINE L1 1985 2958 -3890 491 156 0 0 chr6 184560420 184560510 -4719044 + L1M2 LINE L1 2613 2702 -4147 358 222 83 0 chr6 184560502 184560610 -4718944 + L1MA8 LINE L1 2054 2170 -4679 * 2919 199 39 56 chr6 184560585 184561525 -4718029 + L1MA8 LINE L1 2968 3891 -2957 * 5848 187 43 17 chr6 184561500 184563114 -4716440 + L1MA8 LINE L1 4614 6257 -745 274 55 0 17 chr6 184563379 184563428 -4716126 + L1ME LINE L1 5390 5435 -735 3051 164 14 32 chr6 184563435 184564062 -4715492 + L1MA8 LINE L1 6368 6983 -10 2061 139 0 16 chr6 184564145 184564455 -4715099 - AluSx SINE Alu -7 305 1 265 323 143 12 chr6 184565513 184565674 -4713880 + MIR3 SINE MIR 24 205 -3 362 133 44 67 chr6 184565707 184565797 -4713757 - L1MA9 LINE L1 0 6312 6225 2300 102 0 0 chr6 184565833 184566137 -4713417 - AluSc SINE Alu -1 308 5 3340 142 8 21 chr6 184566825 184567359 -4712195 + MER1A DNA MER1_type 1 527 0 289 337 121 51 chr6 184568408 184569244 -4710310 + L2 LINE L2 1465 2358 -956 2089 118 10 20 chr6 184569430 184569736 -4709818 + AluSg SINE Alu 2 304 -6 203 357 91 14 chr6 184569802 184569945 -4709609 + L2 LINE L2 2916 3069 -203 680 102 41 102 chr6 184569992 184570022 -4709532 + MER4B LTR ERV1 1 31 -579 2052 129 13 7 chr6 184570022 184570324 -4709230 + AluSg SINE Alu 1 304 -6 680 102 41 102 chr6 184570324 184570440 -4709114 + MER4B LTR ERV1 31 138 -472 19664 23 0 0 chr6 184572198 184575406 -4704148 + L1HS LINE L1 2948 6155 0 10926 143 85 34 chr6 184575857 184577797 -4701757 + Tigger1 DNA MER2_type 1 2053 -365 1471 170 0 16 chr6 184577797 184578050 -4701504 + AluJo SINE Alu 1 249 -63 10926 143 85 34 chr6 184578050 184578387 -4701167 + Tigger1 DNA MER2_type 2053 2371 -47 409 192 0 0 chr6 184579135 184579208 -4700346 + MER69 DNA AcHobo 2451 2523 -3 199 292 106 68 chr6 184581029 184581190 -4698364 - L3b LINE CR1 -138 1445 1279 345 312 22 0 chr6 184582044 184582182 -4697372 + L1ME2 LINE L1 5998 6138 -26 344 223 58 25 chr6 184582425 184582546 -4697008 - MER3 DNA MER1_type -3 206 82 25 0 0 0 chr6 184583470 184583495 -4696059 + AT_rich Low_complexity Low_complexity 1 25 0 370 216 20 10 chr6 184584474 184584576 -4694978 + L1M4 LINE L1 16 118 -6424 2755 251 99 20 chr6 184584586 184586541 -4693013 + L1M4 LINE L1 993 3110 -3534 303 350 37 49 chr6 184587153 184587396 -4692158 - HAL1b LINE L1 -770 578 339 551 220 0 8 chr6 184587417 184587535 -4692019 + L1MC1 LINE L1 6217 6333 0 1750 191 0 10 chr6 184587549 184587848 -4691706 + AluJb SINE Alu 6 301 -11 2171 185 54 54 chr6 184588197 184588717 -4690837 + MLT2B1 LTR ERVL 1 520 0 21 0 0 0 chr6 184588761 184588782 -4690772 + AT_rich Low_complexity Low_complexity 1 21 0 309 274 196 39 chr6 184589288 184589492 -4690062 + L1ME LINE L1 5320 5555 -2253 249 257 0 48 chr6 184589497 184589602 -4689952 + L1ME LINE L1 5596 5695 -426 33 0 0 0 chr6 184589662 184589695 -4689859 + AT_rich Low_complexity Low_complexity 1 33 0 26 82 0 0 chr6 184589854 184589915 -4689639 + AT_rich Low_complexity Low_complexity 1 61 0 628 71 31 0 chr6 184590361 184590459 -4689095 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 224 368 96 27 chr6 184591197 184591417 -4688137 - MIR SINE MIR -26 236 2 2234 110 95 0 chr6 184592146 184592472 -4687082 + LTR18A LTR ERVL 1 357 0 1407 253 89 7 chr6 184593474 184593901 -4685653 - MLT1F LTR MaLR -24 518 57 1220 209 113 10 chr6 184593909 184594315 -4685239 - MLT1C LTR MaLR -13 454 7 193 273 15 45 chr6 184595263 184595329 -4684225 + L2 LINE L2 3247 3310 -3 221 246 15 15 chr6 184598030 184598095 -4681459 + CT-rich Low_complexity Low_complexity 1 65 0 185 135 54 0 chr6 184598222 184598259 -4681295 - L2 LINE L2 -20 3252 3214 448 204 153 45 chr6 184598370 184598527 -4681027 + MIR SINE MIR 32 205 -57 511 305 122 14 chr6 184598597 184598941 -4680613 - L1M4 LINE L1 -3621 2525 2145 837 304 69 24 chr6 184598950 184599938 -4679616 - L1MEd LINE L1 -1714 4415 3384 424 288 37 20 chr6 184600062 184600357 -4679197 - L1MEd LINE L1 -2933 3196 2897 560 326 77 23 chr6 184600695 184601134 -4678420 - L1MEd LINE L1 -3536 2593 2131 289 191 43 0 chr6 184602190 184602305 -4677249 + (TA)n Simple_repeat Simple_repeat 2 121 0 228 287 23 69 chr6 184603309 184603483 -4676071 - L1MEd LINE L1 -4871 1248 1083 3183 85 48 5 chr6 184604308 184604699 -4674855 + MLT2A2 LTR ERVL 1 414 -39 200 86 29 0 chr6 184604699 184604734 -4674820 + (TA)n Simple_repeat Simple_repeat 2 37 0 3183 85 48 5 chr6 184604734 184604776 -4674778 + MLT2A2 LTR ERVL 414 453 0 15972 73 9 4 chr6 184604776 184606938 -4672616 + HERVL-A2 LTR ERVL 1 2172 -3482 2361 107 0 0 chr6 184606980 184607280 -4672274 + AluSx SINE Alu 1 300 -12 230 278 0 37 chr6 184609785 184609893 -4669661 - L1M4 LINE L1 -1483 4663 4560 8429 210 13 13 chr6 184610058 184612773 -4666781 + L1PA15 LINE L1 3439 6165 0 417 208 52 0 chr6 184612809 184612905 -4666649 - MIR SINE MIR -2 260 160 457 95 36 0 chr6 184612908 184612992 -4666562 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 308 303 72 0 chr6 184612992 184613121 -4666433 - MIR SINE MIR -63 145 3 894 137 47 21 chr6 184613499 184613689 -4665865 - THE1C LTR MaLR -1 374 180 455 133 18 2 chr6 184613695 184613782 -4665772 + THE1C LTR MaLR 88 165 -210 2370 76 0 10 chr6 184613803 184614117 -4665437 + AluY SINE Alu 1 311 0 1947 134 24 14 chr6 184614443 184614733 -4664821 + AluJb SINE Alu 1 293 -19 401 296 84 81 chr6 184614804 184615150 -4664404 - L1MEd LINE L1 -1110 1218 68 180 0 0 0 chr6 184616059 184616079 -4663475 + (TTG)n Simple_repeat Simple_repeat 2 21 0 192 40 0 0 chr6 184616083 184616108 -4663446 + (T)n Simple_repeat Simple_repeat 1 25 0 4032 201 15 24 chr6 184616108 184616978 -4662576 - MER54A LTR ERVL -18 883 20 2065 117 65 0 chr6 184616978 184617269 -4662285 + AluSx SINE Alu 1 310 -2 4032 201 15 24 chr6 184617269 184617289 -4662265 - MER54A LTR ERVL -881 20 1 1664 101 9 0 chr6 184619602 184619819 -4659735 - AluSx SINE Alu -89 223 5 37 39 0 0 chr6 184619894 184619945 -4659609 + AT_rich Low_complexity Low_complexity 1 51 0 19666 21 0 0 chr6 184623119 184626323 -4653231 + L1HS LINE L1 2948 6151 -4 249 33 0 0 chr6 184626375 184626405 -4653149 + (A)n Simple_repeat Simple_repeat 1 30 0 1951 143 10 0 chr6 184627116 184627409 -4652145 + AluSx SINE Alu 1 296 -16 680 282 109 20 chr6 184628038 184628431 -4651123 + MLT1E2 LTR MaLR 75 502 -124 250 252 36 45 chr6 184628534 184628645 -4650909 - MIR SINE MIR -70 192 83 25 51 0 0 chr6 184629614 184629653 -4649901 + AT_rich Low_complexity Low_complexity 1 39 0 1121 210 110 37 chr6 184629653 184629953 -4649601 - MER2 DNA MER2_type 0 345 24 230 261 92 62 chr6 184630222 184630352 -4649202 - MIR SINE MIR -108 154 21 2090 148 37 91 chr6 184630633 184631119 -4648435 + LTR46 LTR ERV1 1 460 0 23 0 0 0 chr6 184632308 184632331 -4647223 + AT_rich Low_complexity Low_complexity 1 23 0 285 267 85 55 chr6 184633207 184633372 -4646182 + L2 LINE L2 1565 1734 -1580 714 262 128 41 chr6 184634121 184634510 -4645044 - L1MC4a LINE L1 -1908 5900 5478 203 188 0 0 chr6 184634660 184634692 -4644862 - L2 LINE L2 -241 3072 3041 1283 232 37 65 chr6 184634692 184635005 -4644549 - MLT1D LTR MaLR -2 503 208 2139 126 0 0 chr6 184635005 184635298 -4644256 - AluSx SINE Alu -19 293 1 1283 232 37 65 chr6 184635298 184635476 -4644078 - MLT1D LTR MaLR -297 208 26 1814 148 16 26 chr6 184635806 184636111 -4643443 + AluJb SINE Alu 3 304 -8 216 67 0 0 chr6 184636111 184636141 -4643413 + (CATA)n Simple_repeat Simple_repeat 3 32 0 3378 72 0 0 chr6 184638376 184638792 -4640762 - L1PA8 LINE L1 0 6172 5757 265 254 14 0 chr6 184638810 184638881 -4640673 - L1MB8 LINE L1 -27 6151 6080 2539 137 19 5 chr6 184639127 184639499 -4640055 + MER51B LTR ERV1 1 377 0 3995 183 85 13 chr6 184639990 184641029 -4638525 - L1MB7 LINE L1 -11 6173 5066 249 343 34 28 chr6 184641085 184641263 -4638291 + L2 LINE L2 3086 3264 -49 185 116 0 23 chr6 184641420 184641463 -4638091 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 643 197 8 0 chr6 184641563 184641685 -4637869 + MLT2B2 LTR ERVL 1 123 -392 937 270 72 23 chr6 184641686 184642034 -4637520 - MLT1A1 LTR MaLR 0 365 1 824 250 93 21 chr6 184642034 184642370 -4637184 + MLT2B1 LTR ERVL 120 464 0 2750 93 11 14 chr6 184642437 184642802 -4636752 + THE1B LTR MaLR 1 364 0 438 261 70 19 chr6 184644329 184644486 -4635068 + MIR SINE MIR 98 262 0 760 290 80 25 chr6 184644928 184645252 -4634302 + L3 LINE CR1 1231 1572 -5 207 250 0 0 chr6 184646004 184646048 -4633506 + L2 LINE L2 3267 3310 -3 415 277 15 15 chr6 184650947 184651084 -4628470 + (TATATG)n Simple_repeat Simple_repeat 3 139 0 32 0 0 0 chr6 184654664 184654696 -4624858 + AT_rich Low_complexity Low_complexity 1 32 0 1308 254 59 6 chr6 184655330 184655847 -4623707 + LTR69 LTR ERVL 3 588 0 2846 19 0 0 chr6 184656307 184656620 -4622934 + AluYb8 SINE Alu 1 313 -5 26 30 0 0 chr6 184656979 184657012 -4622542 + AT_rich Low_complexity Low_complexity 1 33 0 244 301 88 9 chr6 184659913 184660026 -4619528 - MIR SINE MIR -10 252 131 205 346 12 25 chr6 184660374 184660455 -4619099 - L2 LINE L2 -75 3197 3118 243 318 59 12 chr6 184660777 184660862 -4618692 - MIR SINE MIR -161 101 13 260 347 56 0 chr6 184660877 184661021 -4618533 - L2 LINE L2 -660 2654 2503 5771 129 59 33 chr6 184661167 184662161 -4617393 - Tigger2 DNA MER2_type -1698 1020 1 245 295 74 21 chr6 184662850 184662945 -4616609 + L2 LINE L2 3172 3271 -1 393 296 35 21 chr6 184663679 184663821 -4615733 - MIR3 SINE MIR -3 205 62 807 307 97 27 chr6 184665735 184666188 -4613366 - L2 LINE L2 -313 3000 2516 2367 130 30 16 chr6 184668514 184668884 -4610670 + THE1C LTR MaLR 1 375 0 10112 118 44 42 chr6 184668884 184670461 -4609093 + THE1C-int LTR MaLR 1 1580 0 2807 98 8 16 chr6 184670461 184670839 -4608715 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr6 184670890 184670921 -4608633 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr6 184671033 184671062 -4608492 + AT_rich Low_complexity Low_complexity 1 29 0 286 259 0 0 chr6 184671373 184671431 -4608123 - L2 LINE L2 0 3313 3256 392 320 8 0 chr6 184671525 184671650 -4607904 + MER94 DNA DNA 9 134 0 2243 111 0 0 chr6 184671703 184671991 -4607563 - AluSx SINE Alu -22 290 3 5589 182 33 46 chr6 184672387 184673900 -4605654 + L1MC1 LINE L1 4846 6333 0 1911 237 132 32 chr6 184675048 184675604 -4603950 - L1ME2 LINE L1 0 6233 5734 182 36 0 36 chr6 184675604 184675632 -4603922 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1911 237 132 32 chr6 184675632 184675715 -4603839 - L1ME2 LINE L1 -499 5734 5661 1917 154 63 33 chr6 184675715 184676079 -4603475 - THE1C LTR MaLR 0 375 1 1911 237 132 32 chr6 184676079 184676520 -4603034 - L1ME2 LINE L1 -572 5661 5065 2999 249 124 37 chr6 184676556 184677361 -4602193 - L1ME2 LINE L1 -1799 4416 3683 180 0 0 0 chr6 184677361 184677381 -4602173 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2999 249 124 37 chr6 184677381 184678045 -4601509 - L1ME2 LINE L1 -2532 3683 2819 1048 289 58 13 chr6 184678059 184678658 -4600896 - L1ME2 LINE L1 -3522 2693 2111 482 279 91 69 chr6 184678729 184679339 -4600215 - L1ME2 LINE L1 -4305 2091 1413 361 244 51 20 chr6 184679343 184679567 -4599987 - L1ME2 LINE L1 -5204 1001 828 500 306 43 11 chr6 184679576 184679762 -4599792 - MER58C DNA MER1_type -22 193 2 247 331 110 8 chr6 184680217 184680344 -4599210 - L1ME2 LINE L1 -6120 276 137 633 171 34 0 chr6 184680348 184680774 -4598780 + L1M4b LINE L1 781 1240 -5619 493 223 165 39 chr6 184680779 184681039 -4598515 + L1 LINE L1 4034 4326 -1820 830 203 73 13 chr6 184681042 184681274 -4598280 + L1M4b LINE L1 3445 3690 -3267 1822 209 20 73 chr6 184681282 184681775 -4597779 + MLT1C LTR MaLR 1 467 0 5509 236 30 32 chr6 184681775 184683074 -4596480 + L1M4b LINE L1 3693 4987 -1970 2230 113 0 3 chr6 184683074 184683384 -4596170 + AluSg SINE Alu 1 309 -1 5509 236 30 32 chr6 184683384 184683910 -4595644 + L1M4b LINE L1 4987 5513 -1444 1644 199 22 33 chr6 184683985 184684352 -4595202 + MLT1A1 LTR MaLR 3 365 0 343 274 101 18 chr6 184684635 184684803 -4594751 + L1M4 LINE L1 2816 2997 -3149 1458 177 3 77 chr6 184685253 184685564 -4593990 + AluJb SINE Alu 1 288 -24 25 0 0 0 chr6 184685567 184685592 -4593962 + AT_rich Low_complexity Low_complexity 1 25 0 232 293 71 14 chr6 184686084 184686224 -4593330 + L1M4 LINE L1 4114 4261 -1885 266 300 146 35 chr6 184686298 184686585 -4592969 + L1ME LINE L1 361 679 -5693 282 304 23 23 chr6 184686797 184687014 -4592540 + L1ME LINE L1 761 977 -4887 237 108 0 0 chr6 184687081 184687118 -4592436 + (TG)n Simple_repeat Simple_repeat 2 38 0 372 267 43 21 chr6 184687236 184687423 -4592131 + L1ME LINE L1 1210 1400 -4984 750 257 50 90 chr6 184687426 184687835 -4591719 + L1ME LINE L1 1621 1996 -4567 2027 147 0 0 chr6 184687835 184688135 -4591419 - AluSx SINE Alu -12 300 1 750 257 50 90 chr6 184688135 184688370 -4591184 + L1ME LINE L1 1996 2239 -4324 39279 35 2 2 chr6 184688512 184694083 -4585471 + L1PA3 LINE L1 585 6155 0 12363 143 85 18 chr6 184694534 184696472 -4583082 + Tigger1 DNA MER2_type 1 2107 -311 1499 189 29 26 chr6 184696472 184696778 -4582776 + AluJo SINE Alu 1 307 -5 12363 143 85 18 chr6 184696778 184697062 -4582492 + Tigger1 DNA MER2_type 2107 2371 -47 432 192 0 0 chr6 184697810 184697883 -4581671 + MER69 DNA AcHobo 2451 2523 -3 197 292 106 68 chr6 184699704 184699865 -4579689 - L3b LINE CR1 -138 1445 1279 24 0 0 0 chr6 184700917 184700941 -4578613 + AT_rich Low_complexity Low_complexity 1 24 0 1934 100 30 60 chr6 184701320 184701620 -4577934 - AluSc SINE Alu -18 291 1 761 288 41 16 chr6 184702303 184702546 -4577008 + MIR SINE MIR 2 250 -12 212 0 0 35 chr6 184702570 184702599 -4576955 + (ATG)n Simple_repeat Simple_repeat 2 29 0 459 63 0 0 chr6 184704449 184704512 -4575042 + (TG)n Simple_repeat Simple_repeat 1 63 0 239 320 12 70 chr6 184704962 184705134 -4574420 - L2 LINE L2 -759 2555 2394 565 210 8 32 chr6 184705339 184705463 -4574091 + L2 LINE L2 3140 3260 -12 2243 69 0 46 chr6 184706560 184706865 -4572689 + AluY SINE Alu 1 291 -20 1159 257 69 162 chr6 184708703 184710588 -4568966 - L2 LINE L2 -129 3184 1426 217 160 67 13 chr6 184713182 184713257 -4566297 + (TTATA)n Simple_repeat Simple_repeat 5 83 0 225 0 0 0 chr6 184713900 184713925 -4565629 + (TTA)n Simple_repeat Simple_repeat 3 27 0 6226 67 0 0 chr6 184713925 184714705 -4564849 - L1PA7 LINE L1 -18 6136 5357 1900 144 30 3 chr6 184717267 184717566 -4561988 + AluSq SINE Alu 1 307 -6 726 253 141 40 chr6 184717678 184718064 -4561490 - Charlie7 DNA MER1_type -18 2594 2128 1506 130 97 34 chr6 184718064 184718318 -4561236 + AluSg SINE Alu 9 282 -28 189 0 0 0 chr6 184718318 184718339 -4561215 + (TC)n Simple_repeat Simple_repeat 1 21 0 1506 130 97 34 chr6 184718339 184718353 -4561201 + AluSg SINE Alu 282 294 -16 726 253 141 40 chr6 184718353 184718548 -4561006 - Charlie7 DNA MER1_type -484 2128 1954 1164 250 76 19 chr6 184718566 184719098 -4560456 + L1ME1 LINE L1 2118 2632 -3583 1686 224 61 31 chr6 184719118 184719277 -4560277 + L1ME1 LINE L1 4662 4815 -1420 4331 27 14 0 chr6 184719277 184719791 -4559763 - L1PA4 LINE L1 -6 6149 5629 1686 224 61 31 chr6 184719791 184721023 -4558531 + L1ME1 LINE L1 4815 6231 -4 1158 249 89 0 chr6 184721048 184721409 -4558145 - Charlie7 DNA MER1_type -686 1926 1534 351 297 85 0 chr6 184721904 184722022 -4557532 - MIR SINE MIR -1 261 134 46 83 0 0 chr6 184722033 184722142 -4557412 + AT_rich Low_complexity Low_complexity 1 109 0 395 330 71 5 chr6 184722803 184723000 -4556554 + MIR SINE MIR 18 227 -35 746 239 33 6 chr6 184723148 184723328 -4556226 - MER63A DNA MER1_type -25 185 1 1087 161 10 0 chr6 184723593 184723785 -4555769 - L1MA4 LINE L1 -321 5979 5786 1162 193 49 0 chr6 184723787 184724052 -4555502 + L1MA4 LINE L1 6022 6299 -1 358 254 46 86 chr6 184724225 184724422 -4555132 + L1MEd LINE L1 412 600 -5519 216 0 0 0 chr6 184724691 184724715 -4554839 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 474 288 53 30 chr6 184725356 184725565 -4553989 - MIR SINE MIR -19 243 32 330 45 0 0 chr6 184726068 184726112 -4553442 + (TG)n Simple_repeat Simple_repeat 1 44 0 3027 169 16 40 chr6 184726449 184727006 -4552548 + MLT2B3 LTR ERVL 3 546 -8 696 246 52 33 chr6 184727127 184727338 -4552216 + MIR SINE MIR 22 236 -26 2492 69 0 0 chr6 184728723 184729029 -4550525 + AluY SINE Alu 1 306 -5 2081 119 0 7 chr6 184729104 184729398 -4550156 + AluSx SINE Alu 1 292 -20 800 11 0 0 chr6 184729401 184729491 -4550063 + 5S rRNA rRNA 1 90 -31 325 327 0 26 chr6 184729837 184729950 -4549604 + Charlie2 DNA MER1_type 23 132 -2730 386 216 180 40 chr6 184730049 184730271 -4549283 + Charlie2 DNA MER1_type 1911 2163 -699 297 234 75 21 chr6 184730275 184730369 -4549185 + L1MC4a LINE L1 6477 6575 -1233 973 205 84 57 chr6 184730422 184730646 -4548908 + L1MC4 LINE L1 7163 7380 -662 2649 26 3 0 chr6 184730646 184730953 -4548601 + AluY SINE Alu 1 308 -3 973 205 84 57 chr6 184730953 184731078 -4548476 + L1MC4 LINE L1 7380 7500 -542 1986 144 50 29 chr6 184731078 184731460 -4548094 + MLT1B LTR MaLR 1 390 0 973 205 84 57 chr6 184731460 184731749 -4547805 + L1MC4 LINE L1 7500 8032 -10 456 242 211 22 chr6 184731749 184732298 -4547256 + Charlie2 DNA MER1_type 2131 2783 -79 685 269 32 0 chr6 184733963 184734179 -4545375 + MER58A DNA MER1_type 1 223 -1 2194 214 38 26 chr6 184734259 184734973 -4544581 - L1ME1 LINE L1 -268 5898 5182 567 239 57 35 chr6 184735433 184735644 -4543910 - MIR SINE MIR -13 249 34 223 318 84 28 chr6 184736464 184736571 -4542983 - MIR SINE MIR -75 133 21 640 280 56 22 chr6 184739176 184739408 -4540146 - MIR SINE MIR -15 247 8 212 254 60 30 chr6 184739464 184739531 -4540023 - L2 LINE L2 -5 3308 3240 922 155 72 31 chr6 184740014 184740207 -4539347 + MER58A DNA MER1_type 24 224 0 676 312 98 55 chr6 184740471 184741000 -4538554 + L1M4 LINE L1 3364 3967 -2179 1842 168 0 3 chr6 184741000 184741292 -4538262 + AluJo SINE Alu 3 293 -19 676 312 98 55 chr6 184741292 184741577 -4537977 + L1M4 LINE L1 3967 4238 -1908 1709 166 3 7 chr6 184741619 184741914 -4537640 + AluJb SINE Alu 1 294 -18 798 213 0 0 chr6 184742100 184742325 -4537229 + (CA)n Simple_repeat Simple_repeat 1 225 0 25 65 0 0 chr6 184742696 184742742 -4536812 + AT_rich Low_complexity Low_complexity 1 46 0 488 311 31 54 chr6 184742897 184743119 -4536435 + MLT1K LTR MaLR 334 550 -38 2082 86 57 0 chr6 184743424 184743704 -4535850 + AluSc SINE Alu 1 296 -13 289 299 63 108 chr6 184743919 184744253 -4535301 + L2 LINE L2 2938 3256 -16 478 312 118 25 chr6 184744336 184744949 -4534605 + L1M4 LINE L1 3522 4191 -1955 5201 205 58 23 chr6 184745145 184745609 -4533945 + L1MB7 LINE L1 3757 4203 -1981 300 53 0 0 chr6 184745609 184745647 -4533907 + (TG)n Simple_repeat Simple_repeat 2 39 0 5201 205 58 23 chr6 184745647 184747516 -4532038 + L1MB7 LINE L1 4203 6183 -1 23 0 0 0 chr6 184749710 184749733 -4529821 + AT_rich Low_complexity Low_complexity 1 23 0 424 333 120 8 chr6 184750320 184750554 -4529000 - MIR SINE MIR 0 262 3 234 224 17 0 chr6 184751013 184751071 -4528483 + (TA)n Simple_repeat Simple_repeat 2 60 0 414 42 42 59 chr6 184751357 184751475 -4528079 + (TA)n Simple_repeat Simple_repeat 1 116 0 1043 271 153 7 chr6 184751878 184752352 -4527202 - L2 LINE L2 0 3313 2768 2552 45 0 7 chr6 184753572 184753880 -4525674 + AluY SINE Alu 1 306 -5 282 129 0 43 chr6 184754075 184754145 -4525409 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 254 358 15 0 chr6 184754156 184754223 -4525331 - MIR SINE MIR -107 101 34 267 305 84 48 chr6 184754391 184754558 -4524996 + MLT1H LTR MaLR 119 291 -258 306 310 97 13 chr6 184754606 184754761 -4524793 + MLT1H LTR MaLR 382 549 0 23 33 0 0 chr6 184755839 184755869 -4523685 + AT_rich Low_complexity Low_complexity 1 30 0 232 376 15 15 chr6 184756854 184756987 -4522567 + L3b LINE CR1 1290 1422 -161 2490 57 3 19 chr6 184758012 184758326 -4521228 - AluSp SINE Alu -4 309 1 312 260 103 27 chr6 184758335 184758481 -4521073 - L1M4 LINE L1 -1303 4843 4687 1762 189 3 0 chr6 184758516 184758813 -4520741 + AluJo SINE Alu 3 300 -12 506 266 90 28 chr6 184760361 184760538 -4519016 + MIR3 SINE MIR 21 208 0 26 64 0 0 chr6 184760642 184760689 -4518865 + AT_rich Low_complexity Low_complexity 1 47 0 232 331 107 25 chr6 184761157 184761278 -4518276 + L2 LINE L2 3137 3267 -5 215 252 81 117 chr6 184761314 184761425 -4518129 - MIR SINE MIR -128 134 28 239 365 16 0 chr6 184761523 184761649 -4517905 + L2 LINE L2 3142 3269 -3 329 299 163 9 chr6 184761688 184761909 -4517645 - L1M4 LINE L1 -2660 3486 3232 1742 170 128 28 chr6 184761910 184761983 -4517571 - MSTA LTR MaLR 0 428 364 2120 39 0 0 chr6 184761983 184762240 -4517314 - L1PA4 LINE L1 -2 6153 5897 1742 170 128 28 chr6 184762240 184762555 -4516999 - MSTA LTR MaLR -64 364 1 4328 167 151 22 chr6 184762555 184762675 -4516879 - THE1-int LTR MaLR 0 1580 1477 1872 154 34 10 chr6 184762675 184762973 -4516581 + AluSx SINE Alu 1 305 -7 4328 167 151 22 chr6 184762973 184764096 -4515458 - THE1-int LTR MaLR -103 1477 98 306 192 26 39 chr6 184764906 184764984 -4514570 + L1MC4a LINE L1 5901 5977 -1831 303 326 82 83 chr6 184765027 184765638 -4513916 + L1MEd LINE L1 91 700 -5505 249 33 0 0 chr6 184765731 184765761 -4513793 + (GA)n Simple_repeat Simple_repeat 2 31 0 481 329 17 9 chr6 184766000 184766231 -4513323 + L1MEd LINE L1 1588 1820 -4576 259 277 0 15 chr6 184766395 184766460 -4513094 - L2 LINE L2 -85 3228 3165 207 288 17 0 chr6 184766591 184766650 -4512904 - L2 LINE L2 -40 3232 3173 25 0 0 0 chr6 184766934 184766959 -4512595 + AT_rich Low_complexity Low_complexity 1 25 0 218 228 76 54 chr6 184767592 184767684 -4511870 - L2 LINE L2 -10 3262 3169 270 0 0 0 chr6 184768548 184768578 -4510976 + (CA)n Simple_repeat Simple_repeat 2 31 0 833 307 20 4 chr6 184769296 184769540 -4510014 + MIR SINE MIR 11 258 -4 22 35 0 0 chr6 184769550 184769579 -4509975 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 184769757 184769781 -4509773 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 184770335 184770364 -4509190 + AT_rich Low_complexity Low_complexity 1 29 0 1800 130 18 25 chr6 184770395 184770701 -4508853 - AluJb SINE Alu 0 304 1 504 321 55 45 chr6 184771113 184771493 -4508061 + L2 LINE L2 2572 2955 -359 184 138 0 0 chr6 184771504 184771533 -4508021 + L2 LINE L2 3285 3313 0 265 267 13 93 chr6 184771549 184771699 -4507855 - L2 LINE L2 -8 3305 3168 520 349 63 15 chr6 184771749 184772144 -4507410 + ERVL LTR ERVL 1186 1599 -4165 1808 185 61 16 chr6 184772191 184772570 -4506984 + MSTD LTR MaLR 1 396 0 5586 251 76 24 chr6 184772572 184774219 -4505335 + MSTD-int LTR MaLR 2 1734 -1 2067 185 21 18 chr6 184774220 184774604 -4504950 + MSTD LTR MaLR 1 385 -11 865 287 31 27 chr6 184774614 184774907 -4504647 + ERVL LTR ERVL 1651 1944 -3820 341 147 31 100 chr6 184774942 184775069 -4504485 - Alu SINE Alu 0 302 244 593 247 36 18 chr6 184775077 184775243 -4504311 + ERVL LTR ERVL 2046 2214 -3550 210 286 0 0 chr6 184775268 184775324 -4504230 - L2 LINE L2 -312 3001 2946 378 259 44 63 chr6 184776026 184776184 -4503370 + MLT1K LTR MaLR 368 522 -66 205 204 204 0 chr6 184776341 184776390 -4503164 + L3b LINE CR1 1278 1336 -247 362 279 0 0 chr6 184776449 184776528 -4503026 + MIR3 SINE MIR 101 179 -29 1030 251 39 54 chr6 184777188 184777385 -4502169 - MER119 DNA MER1_type -254 329 138 192 77 0 0 chr6 184777385 184777411 -4502143 + (TA)n Simple_repeat Simple_repeat 1 26 0 1030 251 39 54 chr6 184777411 184777547 -4502007 - MER119 DNA MER1_type -445 138 1 1130 223 76 107 chr6 184777996 184778084 -4501470 - L1MC4 LINE L1 -1 8041 7952 1184 200 115 21 chr6 184778084 184778414 -4501140 + MLT1A1 LTR MaLR 2 362 -3 1130 223 76 107 chr6 184778414 184778504 -4501050 - L1MC4 LINE L1 -90 7952 7861 261 57 0 0 chr6 184778504 184778539 -4501015 + (CA)n Simple_repeat Simple_repeat 1 35 0 1130 223 76 107 chr6 184778539 184778974 -4500580 - L1MC4 LINE L1 -181 7861 7446 923 233 159 16 chr6 184779064 184779378 -4500176 - L1MC4 LINE L1 -1017 7025 6667 228 67 0 0 chr6 184779378 184779408 -4500146 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 22 0 0 0 chr6 184779417 184779439 -4500115 + AT_rich Low_complexity Low_complexity 1 22 0 11570 60 1 2 chr6 184779443 184781217 -4498337 + HERVK9 LTR ERVK 1017 2786 -3130 14364 69 8 1 chr6 184781217 184783126 -4496428 + HERVK9 LTR ERVK 3711 5634 -282 2041 61 21 11 chr6 184783222 184783501 -4496053 + HERVK9 LTR ERVK 5635 5916 0 3644 97 6 16 chr6 184783501 184784017 -4495537 + MER9 LTR ERVK 1 511 0 875 245 21 27 chr6 184784018 184784370 -4495184 - L1MC4a LINE L1 -1191 6617 6355 1669 256 27 20 chr6 184784372 184784931 -4494623 - L1ME2 LINE L1 -31 6133 5571 1999 130 77 14 chr6 184785349 184785702 -4493852 - THE1C LTR MaLR 0 375 1 1237 170 4 8 chr6 184786286 184786521 -4493033 + Tigger1 DNA MER2_type 1 234 -2184 5227 156 27 7 chr6 184786530 184787493 -4492061 + Tigger1 DNA MER2_type 337 1318 -1100 3054 146 21 31 chr6 184787535 184787915 -4491639 + Tigger1 DNA MER2_type 1847 2220 -198 2134 107 0 36 chr6 184787915 184788224 -4491330 - AluSg SINE Alu -10 300 3 3054 146 21 31 chr6 184788224 184788417 -4491137 + Tigger1 DNA MER2_type 2220 2414 -4 226 300 57 0 chr6 184788470 184788540 -4491014 - L2 LINE L2 -85 3228 3155 869 119 205 11 chr6 184789873 184790058 -4489496 - MSTB1 LTR MaLR -4 428 208 254 160 0 0 chr6 184790058 184790108 -4489446 - MSTB1 LTR MaLR -406 51 2 2199 251 98 88 chr6 184790611 184791663 -4487891 + L2 LINE L2 1573 2634 -680 242 257 88 44 chr6 184791915 184792187 -4487367 - L1M4 LINE L1 -2577 3569 3286 440 330 125 13 chr6 184792750 184793062 -4486492 + L1ME4a LINE L1 5569 5915 -206 21 57 0 0 chr6 184793562 184793597 -4485957 + AT_rich Low_complexity Low_complexity 1 35 0 570 147 13 122 chr6 184794364 184794520 -4485034 + L1PA15 LINE L1 6027 6165 0 271 271 82 53 chr6 184794805 184795049 -4484505 + L2 LINE L2 139 389 -2925 416 325 51 31 chr6 184796468 184796723 -4482831 + HAL1b LINE L1 256 515 -833 1045 248 143 37 chr6 184796943 184797375 -4482179 + L2 LINE L2 2834 3311 -2 288 324 88 7 chr6 184797535 184797683 -4481871 + L3 LINE CR1 687 846 -731 985 311 77 11 chr6 184797696 184798136 -4481418 + L2 LINE L2 2030 2498 -816 3752 146 84 26 chr6 184798140 184798986 -4480568 + MER4D LTR ERV1 4 609 -1 285 324 123 0 chr6 184798990 184799160 -4480394 + L2 LINE L2 2500 2690 -624 481 274 91 113 chr6 184799177 184799629 -4479925 + L2 LINE L2 2866 3307 -6 205 281 18 0 chr6 184799635 184799692 -4479862 + GA-rich Low_complexity Low_complexity 3 60 0 304 379 66 9 chr6 184799715 184799942 -4479612 + L3 LINE CR1 897 1136 -441 1683 184 20 14 chr6 184800144 184800437 -4479117 + AluJb SINE Alu 1 295 -17 644 302 85 7 chr6 184801688 184801993 -4477561 - MER102b DNA MER1_type -11 330 2 190 189 27 0 chr6 184803716 184803753 -4475801 - MER5A DNA MER1_type -1 188 151 16883 95 26 34 chr6 184804158 184805028 -4474526 + Charlie3 DNA MER1_type 53 929 -1777 2241 104 10 3 chr6 184805028 184805325 -4474229 + AluSg SINE Alu 1 299 -11 16883 95 26 34 chr6 184805325 184805433 -4474121 + Charlie3 DNA MER1_type 929 1036 -1670 2384 84 0 3 chr6 184805433 184805731 -4473823 - AluSq SINE Alu -15 298 2 16883 95 26 34 chr6 184805731 184807427 -4472127 + Charlie3 DNA MER1_type 1036 2706 0 238 308 51 13 chr6 184807428 184807506 -4472048 + MIR SINE MIR 32 112 -150 225 0 0 0 chr6 184807868 184807893 -4471661 + (A)n Simple_repeat Simple_repeat 1 25 0 272 216 67 18 chr6 184807946 184808082 -4471472 - L2 LINE L2 -5 3308 3125 1123 131 5 0 chr6 184808298 184808497 -4471057 + L1P5 LINE L1 1 200 -6663 13263 152 68 12 chr6 184808500 184810523 -4469031 + L1P5 LINE L1 637 2545 -4322 1580 188 43 0 chr6 184810523 184810800 -4468754 + AluSx SINE Alu 1 289 -23 13263 152 68 12 chr6 184810800 184814296 -4465258 + L1P5 LINE L1 2545 6497 -370 189 94 0 0 chr6 184814356 184814388 -4465166 + (TA)n Simple_repeat Simple_repeat 2 33 0 193 167 37 0 chr6 184815162 184815216 -4464338 + GA-rich Low_complexity Low_complexity 4 59 0 567 305 94 62 chr6 184815642 184816026 -4463528 - L2 LINE L2 -14 3299 2904 191 297 257 30 chr6 184816179 184816381 -4463173 + MIR SINE MIR 2 249 -13 185 0 0 39 chr6 184817104 184817130 -4462424 + (CATCC)n Simple_repeat Simple_repeat 5 29 0 1833 155 6 40 chr6 184817968 184818291 -4461263 + AluJo SINE Alu 1 312 0 274 214 12 48 chr6 184819613 184819697 -4459857 + L1ME1 LINE L1 92 172 -6224 680 275 5 0 chr6 184819719 184819908 -4459646 + L1ME1 LINE L1 3997 4186 -2029 340 247 33 120 chr6 184820070 184820116 -4459438 + L1ME1 LINE L1 4240 4288 -1927 5033 150 43 43 chr6 184820116 184821085 -4458469 + LTR5 LTR ERVK 1 969 0 340 247 33 120 chr6 184821085 184821118 -4458436 + L1ME1 LINE L1 4288 4322 -1893 2453 42 0 39 chr6 184821118 184821426 -4458128 + AluY SINE Alu 1 296 -15 340 247 33 120 chr6 184821426 184821495 -4458059 + L1ME1 LINE L1 4322 4376 -1839 2381 243 79 5 chr6 184821510 184822429 -4457125 + L1ME1 LINE L1 4563 5548 -685 1194 242 41 26 chr6 184822463 184822866 -4456688 + L1ME1 LINE L1 5834 6403 0 436 351 53 12 chr6 184825969 184826214 -4453340 - L1MC4a LINE L1 -1875 5933 5679 213 233 0 0 chr6 184827209 184827252 -4452302 + MIR SINE MIR 158 200 -62 1685 256 83 13 chr6 184827980 184828592 -4450962 - L1ME1 LINE L1 -80 6086 5432 830 264 45 31 chr6 184828604 184828957 -4450597 - L1MB7 LINE L1 -10 6672 6315 667 142 123 7 chr6 184828968 184829123 -4450431 - L1MA4A LINE L1 -2 6301 6129 * 10494 179 40 32 chr6 184829120 184832379 -4447175 - L1 LINE L1 -1194 5654 2375 2323 247 97 27 chr6 184832377 184833842 -4445712 - L1MB7 LINE L1 -357 6307 4639 * 1060 271 47 8 chr6 184833913 184834275 -4445279 - L1MB7 LINE L1 -2281 4363 3988 286 320 20 20 chr6 184834590 184834787 -4444767 - L1MB7 LINE L1 -6309 233 37 2368 232 103 22 chr6 184834851 184835353 -4444201 + Charlie1 DNA MER1_type 1 591 -2170 2288 111 0 0 chr6 184835353 184835659 -4443895 - AluSg SINE Alu -4 306 1 2368 232 103 22 chr6 184835659 184835939 -4443615 + Charlie1 DNA MER1_type 591 847 -1914 682 230 124 11 chr6 184835951 184836216 -4443338 + L2 LINE L2 1527 1821 -1493 792 272 163 14 chr6 184837314 184837671 -4441883 + L1ME1 LINE L1 5707 6116 -50 429 304 55 51 chr6 184837710 184837927 -4441627 - MIR SINE MIR -18 244 27 3738 194 25 6 chr6 184838115 184838825 -4440729 + MER44D DNA MER2_type 10 605 0 21 36 0 0 chr6 184839601 184839629 -4439925 + AT_rich Low_complexity Low_complexity 1 28 0 5625 136 35 21 chr6 184840760 184841707 -4437847 + Tigger1 DNA MER2_type 1 960 -1458 1313 148 46 0 chr6 184841711 184841948 -4437606 - L1MB3 LINE L1 -217 5966 5719 * 5929 222 42 21 chr6 184841944 184843651 -4435903 + L1 LINE L1 3452 5193 -953 2957 90 37 9 chr6 184843659 184844091 -4435463 + MLT2A1 LTR ERVL 1 444 0 43691 71 13 8 chr6 184844091 184849716 -4429838 + HERVL-A1-A1 LTR ERVL 1 5654 0 3011 94 18 14 chr6 184849716 184850107 -4429447 + MLT2A1 LTR ERVL 1 396 -48 261 0 0 0 chr6 184850107 184850136 -4429418 + (TG)n Simple_repeat Simple_repeat 2 30 0 3011 94 18 14 chr6 184850136 184850178 -4429376 + MLT2A1 LTR ERVL 396 436 -8 583 188 7 0 chr6 184850185 184850323 -4429231 + L1P LINE L1 5205 5343 -803 * 799 89 25 25 chr6 184850321 184850479 -4429075 + L1PA16 LINE L1 6023 6157 -9 202 341 56 34 chr6 184850718 184850897 -4428657 + L2 LINE L2 2694 2876 -438 904 214 12 0 chr6 184852413 184852586 -4426968 - MER5A DNA MER1_type -1 188 14 22 0 0 0 chr6 184852909 184852931 -4426623 + AT_rich Low_complexity Low_complexity 1 22 0 1573 151 60 11 chr6 184853074 184853358 -4426196 - MER7A DNA MER2_type 0 346 51 5581 184 17 10 chr6 184853891 184855046 -4424508 + L1MA4 LINE L1 3243 4405 -1741 2779 177 10 0 chr6 184855073 184855426 -4424128 - L1PB4 LINE L1 -12 6144 5783 246 62 0 0 chr6 184855426 184855458 -4424096 + (TG)n Simple_repeat Simple_repeat 2 33 0 2779 177 10 0 chr6 184855458 184855590 -4423964 - L1PB4 LINE L1 -373 5783 5654 * 5414 151 52 14 chr6 184855587 184857389 -4422165 + L1MA4 LINE L1 4413 6291 -9 25 31 0 0 chr6 184857389 184857421 -4422133 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr6 184857610 184857632 -4421922 + AT_rich Low_complexity Low_complexity 1 22 0 1624 148 10 21 chr6 184859477 184859767 -4419787 + AluSx SINE Alu 1 287 -25 294 60 104 104 chr6 184860173 184860240 -4419314 - L1MA6 LINE L1 0 6300 6237 1913 145 31 0 chr6 184860475 184860765 -4418789 - AluSx SINE Alu -11 301 3 240 143 0 0 chr6 184860790 184860832 -4418722 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 336 129 16 0 chr6 184861967 184862029 -4417525 + L1PA7 LINE L1 6089 6151 -3 2669 39 7 0 chr6 184862447 184862755 -4416799 - AluY SINE Alu -1 310 1 704 223 25 40 chr6 184863522 184863709 -4415845 + L1MB4 LINE L1 5982 6167 -13 186 43 0 0 chr6 184863709 184863732 -4415822 + (TG)n Simple_repeat Simple_repeat 1 23 0 704 223 25 40 chr6 184863732 184863746 -4415808 + L1MB4 LINE L1 6167 6180 0 255 61 0 0 chr6 184864658 184864691 -4414863 + (CA)n Simple_repeat Simple_repeat 2 34 0 6868 204 44 16 chr6 184865344 184866905 -4412649 + L1MC3 LINE L1 5224 5397 -749 2247 235 72 69 chr6 184867864 184869032 -4410522 - L1MC5 LINE L1 -81 7880 6710 2235 105 0 0 chr6 184869156 184869461 -4410093 - AluY SINE Alu -6 305 1 24 32 0 0 chr6 184869625 184869656 -4409898 + AT_rich Low_complexity Low_complexity 1 31 0 464 286 70 90 chr6 184870329 184870672 -4408882 + L3 LINE CR1 1131 1466 -111 185 250 36 36 chr6 184871298 184871354 -4408200 + L2 LINE L2 3258 3313 0 2128 220 57 28 chr6 184872111 184872657 -4406897 + MER68 LTR ERV1 1 562 0 7337 96 8 6 chr6 184873958 184875148 -4404406 + L1MA1 LINE L1 5101 6293 -9 26 0 0 0 chr6 184875149 184875175 -4404379 + AT_rich Low_complexity Low_complexity 1 26 0 238 250 12 25 chr6 184875177 184875257 -4404297 + MIR SINE MIR 97 175 -87 1010 147 30 10 chr6 184875722 184875920 -4403634 + Tigger2 DNA MER2_type 1 202 -2516 737 185 52 40 chr6 184875896 184876069 -4403485 + Tigger2 DNA MER2_type 2544 2718 0 * 2270 96 3 0 chr6 184876695 184876988 -4402566 + AluSx SINE Alu 1 294 -18 191 296 0 0 chr6 184877787 184877831 -4401723 - L2 LINE L2 -5 3308 3265 3635 52 0 0 chr6 184877876 184878321 -4401233 + L1PA5 LINE L1 5577 6021 -133 992 41 0 0 chr6 184878675 184878796 -4400758 + L1PA5 LINE L1 6028 6148 -6 357 374 41 26 chr6 184878877 184879219 -4400335 - L2 LINE L2 -793 2521 2175 259 243 40 81 chr6 184879468 184879497 -4400057 + MLT1E2 LTR MaLR 1 30 -624 2213 124 14 11 chr6 184879497 184879851 -4399703 + THE1A LTR MaLR 1 355 0 259 243 40 81 chr6 184879851 184879895 -4399659 + MLT1E2 LTR MaLR 30 71 -583 1777 244 110 4 chr6 184879944 184880416 -4399138 + MLT1E2 LTR MaLR 103 624 -2 1777 132 122 43 chr6 184880617 184880775 -4398779 + MSTA LTR MaLR 30 174 -254 2401 78 0 0 chr6 184880775 184881071 -4398483 + AluY SINE Alu 1 296 -15 1777 132 122 43 chr6 184881071 184881282 -4398272 + MSTA LTR MaLR 174 428 0 451 247 201 7 chr6 184881501 184881655 -4397899 + MLT1E2 LTR MaLR 105 288 -338 644 187 0 0 chr6 184881826 184881933 -4397621 + FLAM_C SINE Alu 1 107 -36 711 203 22 79 chr6 184882630 184882857 -4396697 + MER20 DNA MER1_type 6 219 0 344 220 22 0 chr6 184883035 184883126 -4396428 + GA-rich Low_complexity Low_complexity 3 95 0 2025 135 7 7 chr6 184883445 184883741 -4395813 + AluSx SINE Alu 1 296 -16 383 214 21 69 chr6 184884782 184884927 -4394627 + L1MC/D LINE L1 2188 2325 -3821 3731 212 44 8 chr6 184884929 184886359 -4393195 + L1MC/D LINE L1 4127 5602 -731 218 311 61 72 chr6 184886447 184886627 -4392927 - L2 LINE L2 -451 2863 2686 1585 221 70 23 chr6 184886671 184887154 -4392400 + L1ME3A LINE L1 5524 6029 -141 249 304 152 0 chr6 184887156 184887248 -4392306 - MIR SINE MIR -111 151 46 194 339 55 22 chr6 184887512 184887657 -4391897 - MIR SINE MIR -13 249 32 2592 46 0 3 chr6 184887832 184888136 -4391418 - AluY SINE Alu -8 303 1 3010 161 9 6 chr6 184888171 184888698 -4390856 + Tigger7 DNA MER2_type 8 536 -1951 810 240 54 31 chr6 184888760 184889077 -4390477 + MER33 DNA MER1_type 1 324 0 276 104 0 21 chr6 184889329 184889377 -4390177 + MLT1A1 LTR MaLR 1 47 -318 958 144 6 6 chr6 184889843 184890003 -4389551 + MLT1B LTR MaLR 1 160 -230 681 134 87 40 chr6 184890608 184890757 -4388797 + MER82 DNA MER2_type 1 156 -497 451 257 53 0 chr6 184890769 184890882 -4388672 + MER82 DNA MER2_type 535 653 0 416 256 74 25 chr6 184892091 184892212 -4387342 + MIR SINE MIR 42 168 -94 772 144 0 11 chr6 184892455 184892692 -4386862 + AluJb SINE Alu 1 300 -12 289 290 113 36 chr6 184895493 184895714 -4383840 + L2 LINE L2 1742 1979 -1335 236 280 103 19 chr6 184895761 184895868 -4383686 + L2 LINE L2 1896 2011 -1303 259 327 133 39 chr6 184896180 184896700 -4382854 + L2 LINE L2 2040 2608 -706 307 308 38 8 chr6 184896925 184897058 -4382496 + MLT1L LTR MaLR 475 611 -4 206 347 157 41 chr6 184898851 184899194 -4380360 - L2 LINE L2 -339 2975 2593 1118 277 97 28 chr6 184899284 184900030 -4379524 + L2 LINE L2 2456 3313 0 1286 182 48 84 chr6 184901086 184901465 -4378089 + MLT1A1 LTR MaLR 1 365 0 24 32 0 0 chr6 184902658 184902689 -4376865 + AT_rich Low_complexity Low_complexity 1 31 0 682 266 36 10 chr6 184902908 184903100 -4376454 - MIR SINE MIR -13 249 53 540 169 118 15 chr6 184903209 184903345 -4376209 + MLT1D LTR MaLR 7 156 -349 2854 173 59 5 chr6 184903359 184903920 -4375634 + ERVL-C1 LTR ERVL 4493 5083 -681 1005 205 8 43 chr6 184903929 184904187 -4375367 + MER76 LTR ERV 8 256 -432 552 280 103 15 chr6 184904221 184904492 -4375062 + MER76 LTR ERV 360 654 -34 2622 201 58 16 chr6 184904498 184905140 -4374414 + ERVL-C1 LTR ERVL 5082 5750 -14 625 222 35 12 chr6 184905140 184905311 -4374243 + MLT2C1 LTR ERVL 2 176 -221 * 1012 211 130 53 chr6 184905221 184905614 -4373940 + MLT1D LTR MaLR 83 505 0 1367 209 24 62 chr6 184905636 184906091 -4373463 + LTR56 LTR ERV1 8 445 0 224 267 27 27 chr6 184906949 184907024 -4372530 + L2 LINE L2 3189 3263 -50 2398 93 10 0 chr6 184908114 184908424 -4371130 - AluSp SINE Alu 0 313 1 354 311 260 5 chr6 184908570 184908766 -4370788 + MIR SINE MIR 7 252 -10 611 230 75 19 chr6 184910081 184910242 -4369312 - MIR SINE MIR -79 183 14 210 235 0 39 chr6 184910314 184910365 -4369189 - L2 LINE L2 -1 3312 3264 2427 67 0 0 chr6 184910446 184910745 -4368809 + AluY SINE Alu 1 299 -12 6786 63 9 3 chr6 184911857 184913295 -4366259 + L1PA7 LINE L1 4706 6153 -1 1193 257 69 10 chr6 184913855 184914263 -4365291 + L1MC4a LINE L1 6530 6961 -847 246 243 21 62 chr6 184914271 184914415 -4365139 + L1MC4 LINE L1 7012 7149 -893 375 290 69 8 chr6 184914522 184914653 -4364901 - L1MC4 LINE L1 -792 7250 7112 1028 262 54 9 chr6 184914685 184915021 -4364533 - L1MC4 LINE L1 -998 7044 6694 1012 274 108 41 chr6 184915142 184915891 -4363663 - L1MC4a LINE L1 -1543 6265 5467 342 213 38 81 chr6 184915905 184916065 -4363489 - L1MC4a LINE L1 -2401 5407 5255 306 220 99 11 chr6 184916074 184916165 -4363389 - L1MC4a LINE L1 -895 5251 5153 24 32 0 0 chr6 184916189 184916220 -4363334 + AT_rich Low_complexity Low_complexity 1 31 0 282 314 54 18 chr6 184916333 184916610 -4362944 - L1MC4a LINE L1 -1038 5108 4822 1887 157 33 30 chr6 184918087 184918450 -4361104 - THE1B LTR MaLR 0 364 1 183 205 0 0 chr6 184919057 184919096 -4360458 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 506 269 33 6 chr6 184919607 184919789 -4359765 + L1MC4 LINE L1 7210 7396 -646 489 298 46 0 chr6 184919916 184920047 -4359507 - MIR SINE MIR -106 156 20 1650 170 42 28 chr6 184920586 184920944 -4358610 - MLT1A1 LTR MaLR 0 365 3 321 257 48 0 chr6 184920973 184921078 -4358476 + L1MC4a LINE L1 7166 7275 -533 1214 286 94 29 chr6 184921103 184921418 -4358136 + L2 LINE L2 2420 2713 -600 1651 193 3 3 chr6 184921418 184921714 -4357840 + AluJo SINE Alu 3 298 -14 1214 286 94 29 chr6 184921714 184922227 -4357327 + L2 LINE L2 2713 3313 0 506 261 96 6 chr6 184923500 184923657 -4355897 + MIR SINE MIR 80 250 -12 2641 77 6 6 chr6 184925949 184926298 -4353256 + THE1A LTR MaLR 5 353 -2 286 302 10 10 chr6 184926380 184926476 -4353078 - MIR SINE MIR -8 254 159 541 170 14 109 chr6 184927473 184927620 -4351934 + MER69 DNA AcHobo 4 136 -2390 29 0 0 0 chr6 184928014 184928043 -4351511 + AT_rich Low_complexity Low_complexity 1 29 0 281 277 8 67 chr6 184928732 184928851 -4350703 + L1M4 LINE L1 5691 5802 -352 252 247 39 39 chr6 184929218 184929295 -4350259 + L2 LINE L2 3196 3272 0 198 343 0 70 chr6 184929303 184929475 -4350079 + L2 LINE L2 2200 2359 -955 328 336 48 8 chr6 184930913 184931038 -4348516 + L2 LINE L2 3137 3266 -6 1122 174 43 110 chr6 184932225 184932598 -4346956 + MER7A DNA MER2_type 1 346 0 453 116 0 0 chr6 184933022 184933091 -4346463 + (TA)n Simple_repeat Simple_repeat 1 69 0 7503 36 11 0 chr6 184933091 184934187 -4345367 - L1PA5 LINE L1 -9 6145 5045 8963 42 1 9 chr6 184934187 184935231 -4344323 + L1P LINE L1 3849 4885 -1261 2435 61 40 0 chr6 184935231 184935527 -4344027 + AluY SINE Alu 1 308 -3 8963 42 1 9 chr6 184935527 184935576 -4343978 + L1P LINE L1 4885 4933 -1213 216 316 35 86 chr6 184935769 184935943 -4343611 + MIR3 SINE MIR 16 180 -28 245 238 25 75 chr6 184936075 184936155 -4343399 - MLT1K LTR MaLR -10 578 503 * 334 268 55 16 chr6 184936151 184936278 -4343276 + MLT1I LTR MaLR 276 407 -2 1979 127 31 3 chr6 184937347 184937638 -4341916 - AluSx SINE Alu -13 299 1 1949 152 7 7 chr6 184938328 184938630 -4340924 + AluJb SINE Alu 1 302 -10 224 331 72 64 chr6 184938748 184939479 -4340075 + L2 LINE L2 2241 2977 -337 353 241 36 24 chr6 184939612 184939695 -4339859 + L2 LINE L2 3169 3252 -20 2396 103 0 0 chr6 184939899 184940209 -4339345 + AluSg SINE Alu 1 310 0 21 57 0 0 chr6 184941860 184941895 -4337659 + AT_rich Low_complexity Low_complexity 1 35 0 859 109 8 0 chr6 184942330 184942449 -4337105 - AluSg/x SINE Alu -28 282 163 438 198 0 44 chr6 184942581 184942672 -4336882 + MER81 DNA DNA 1 87 -27 481 173 282 0 chr6 184942913 184943023 -4336531 + AluJo SINE Alu 1 141 -171 1206 89 0 0 chr6 184943896 184944179 -4335375 + (TAGTG)n Simple_repeat Simple_repeat 1 283 0 1284 81 0 2 chr6 184944204 184944563 -4334991 + (TAGTG)n Simple_repeat Simple_repeat 1 538 0 1089 106 0 0 chr6 184944584 184944764 -4334790 + (TAGTG)n Simple_repeat Simple_repeat 1 180 0 2278 120 0 0 chr6 184945728 184946036 -4333518 + AluSc SINE Alu 1 308 -1 2201 119 0 7 chr6 184946462 184946772 -4332782 + AluSg SINE Alu 1 308 -2 1766 170 44 6 chr6 184946855 184947221 -4332333 + MLT2C2 LTR ERVL 1 409 -55 294 148 0 0 chr6 184947241 184947295 -4332259 + (TG)n Simple_repeat Simple_repeat 1 54 0 1996 167 21 3 chr6 184947295 184947631 -4331923 - MER7A DNA MER2_type -6 340 1 2286 124 77 21 chr6 184947795 184948131 -4331423 + MSTA LTR MaLR 30 391 -37 1762 124 88 0 chr6 184948131 184948404 -4331150 - AluSq SINE Alu -16 297 1 2286 124 77 21 chr6 184948404 184948445 -4331109 + MSTA LTR MaLR 391 428 0 849 303 167 15 chr6 184949635 184950504 -4329050 - L2 LINE L2 -1 3312 2252 2506 111 34 3 chr6 184950504 184950856 -4328698 + THE1B LTR MaLR 2 364 0 849 303 167 15 chr6 184950856 184951062 -4328492 - L2 LINE L2 -1061 2252 2079 431 297 12 12 chr6 184953155 184953320 -4326234 + MIR SINE MIR 83 247 -15 1419 177 63 37 chr6 184953328 184953628 -4325926 - AluJo SINE Alu -4 308 1 1948 151 0 26 chr6 184954506 184954818 -4324736 - AluJb SINE Alu -8 304 1 1875 153 3 13 chr6 184955050 184955351 -4324203 + AluSx SINE Alu 1 298 -14 2317 102 7 7 chr6 184956903 184957207 -4322347 + AluSx SINE Alu 1 304 -8 249 108 0 0 chr6 184958064 184958101 -4321453 + (A)n Simple_repeat Simple_repeat 1 37 0 1537 113 4 42 chr6 184958603 184958842 -4320712 - AluSg/x SINE Alu -4 306 77 23 0 0 0 chr6 184958843 184958866 -4320688 + AT_rich Low_complexity Low_complexity 1 23 0 457 264 57 7 chr6 184959014 184959154 -4320400 - MER5A DNA MER1_type -1 188 42 213 65 0 0 chr6 184960451 184960482 -4319072 + (TG)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr6 184960801 184960822 -4318732 + AT_rich Low_complexity Low_complexity 1 21 0 208 225 56 28 chr6 184961836 184961907 -4317647 + MIR SINE MIR 93 150 -58 370 291 63 40 chr6 184961989 184962212 -4317342 - MIR SINE MIR -20 242 15 398 155 0 24 chr6 184963998 184964082 -4315472 + GA-rich Low_complexity Low_complexity 1 82 0 258 281 70 35 chr6 184964135 184964249 -4315305 - MIR SINE MIR -112 150 33 2079 148 0 3 chr6 184964440 184964743 -4314811 + AluSx SINE Alu 1 302 -10 1839 162 0 7 chr6 184964770 184965072 -4314482 + AluJo SINE Alu 1 300 -12 22 0 0 0 chr6 184965228 184965250 -4314304 + AT_rich Low_complexity Low_complexity 1 22 0 371 183 12 0 chr6 184967815 184967897 -4311657 - Charlie2a DNA MER1_type -61 2801 2719 565 262 58 0 chr6 184967911 184968083 -4311471 - Charlie2a DNA MER1_type -1200 1662 1481 503 257 6 0 chr6 184968135 184968306 -4311248 + (TGGA)n Simple_repeat Simple_repeat 3 174 0 281 264 104 19 chr6 184968321 184968427 -4311127 - Charlie2b DNA MER1_type -2112 670 556 * 518 254 8 23 chr6 184968424 184968554 -4311000 - Charlie2b DNA MER1_type -2549 313 186 2057 162 42 27 chr6 184968559 184968967 -4310587 + L1MA7 LINE L1 5873 6286 -5 2394 56 0 20 chr6 184969041 184969345 -4310209 - AluY SINE Alu -13 298 1 264 324 37 0 chr6 184969717 184969825 -4309729 - MER58B DNA MER1_type 0 341 230 290 235 98 45 chr6 184970255 184970387 -4309167 + LTR16C LTR ERVL 345 483 -8 2364 107 0 0 chr6 184970556 184970854 -4308700 + AluSx SINE Alu 1 298 -14 183 256 0 0 chr6 184971438 184971477 -4308077 - MIR SINE MIR -119 143 105 240 241 0 0 chr6 184972828 184972886 -4306668 - MIR SINE MIR -38 224 167 2585 59 3 0 chr6 184972991 184973296 -4306258 - AluY SINE Alu -5 306 1 1370 254 101 82 chr6 184975221 184975756 -4303798 - L1MC4a LINE L1 -1624 6184 5623 2100 98 0 0 chr6 184975756 184976020 -4303534 - AluSc SINE Alu -45 264 1 1370 254 101 82 chr6 184976020 184976398 -4303156 - L1MC4a LINE L1 -2185 5623 5254 225 186 0 0 chr6 184976737 184976780 -4302774 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 300 258 11 11 chr6 184976961 184977050 -4302504 - L1MC4a LINE L1 -1326 4820 4732 634 164 0 0 chr6 184977229 184977339 -4302215 - AluJ SINE Alu 0 312 203 875 145 0 0 chr6 184977340 184977471 -4302083 - AluJ SINE Alu -171 131 1 233 308 168 29 chr6 184978196 184978404 -4301150 - L2 LINE L2 0 3272 3036 773 299 93 39 chr6 184980174 184980785 -4298769 + L2 LINE L2 2163 2806 -508 225 316 202 0 chr6 184981042 184981156 -4298398 + L2 LINE L2 3154 3290 -23 207 0 0 0 chr6 184981221 184981244 -4298310 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 351 0 0 0 chr6 184981243 184981282 -4298272 + (CA)n Simple_repeat Simple_repeat 1 39 0 184 326 77 68 chr6 184981746 184981967 -4297587 + L2 LINE L2 3040 3262 -10 318 270 60 81 chr6 184982045 184982230 -4297324 - L2 LINE L2 -13 3300 3120 23 78 0 0 chr6 184987069 184987120 -4292434 + GC_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr6 184987249 184987270 -4292284 + GC_rich Low_complexity Low_complexity 1 21 0 21 26 0 26 chr6 184991072 184991092 -4288462 + AT_rich Low_complexity Low_complexity 1 21 -17 817 146 28 0 chr6 184991092 184991236 -4288318 - L1PB1 LINE L1 -1 6150 6003 21 26 0 26 chr6 184991236 184991254 -4288300 + AT_rich Low_complexity Low_complexity 21 38 0 33 80 0 0 chr6 184991365 184991440 -4288114 + AT_rich Low_complexity Low_complexity 1 75 0 503 189 21 14 chr6 184992565 184992708 -4286846 + GA-rich Low_complexity Low_complexity 3 146 0 1589 169 0 15 chr6 185043580 185043841 -4235713 + AluJb SINE Alu 40 296 -16 721 67 0 0 chr6 185044499 185044588 -4234966 - AluY SINE Alu -221 90 2 21 0 0 0 chr6 185044955 185044976 -4234578 + AT_rich Low_complexity Low_complexity 1 21 0 256 374 0 0 chr6 185045111 185045226 -4234328 - MIR3 SINE MIR -49 159 45 288 256 0 13 chr6 185048653 185048731 -4230823 - MER116 DNA Mariner -1 79 3 3624 24 0 2 chr6 185049596 185050016 -4229538 + L1PA2 LINE L1 5736 6154 -1 2462 51 0 44 chr6 185050464 185050779 -4228775 - AluY SINE Alu 0 311 11 237 276 19 9 chr6 185051185 185051290 -4228264 + (TATATG)n Simple_repeat Simple_repeat 6 111 0 2088 125 7 3 chr6 185051615 185051910 -4227644 + AluSx SINE Alu 1 296 -16 2307 72 7 13 chr6 185051911 185052216 -4227338 + AluSg SINE Alu 3 305 -5 188 246 180 12 chr6 185052524 185052691 -4226863 - L2 LINE L2 -276 3037 2843 306 331 100 6 chr6 185052754 185052914 -4226640 + MIR SINE MIR 81 255 -7 254 291 94 49 chr6 185055169 185055392 -4224162 + L1MEd LINE L1 312 544 -5575 442 272 80 53 chr6 185055545 185056019 -4223535 + L1MEd LINE L1 753 1239 -4880 244 133 67 17 chr6 185056055 185056115 -4223439 - MLT2B1 LTR ERVL 0 520 458 754 137 14 0 chr6 185056115 185056261 -4223293 + (TAGG)n Simple_repeat Simple_repeat 1 148 0 26 0 0 0 chr6 185058769 185058795 -4220759 + AT_rich Low_complexity Low_complexity 1 26 0 306 145 63 13 chr6 185058796 185058955 -4220599 + (TA)n Simple_repeat Simple_repeat 2 168 0 255 114 0 0 chr6 185059156 185059200 -4220354 + (T)n Simple_repeat Simple_repeat 1 44 0 219 228 18 18 chr6 185060981 185061038 -4218516 + CT-rich Low_complexity Low_complexity 2 58 0 2394 76 13 7 chr6 185062402 185062704 -4216850 - AluY SINE Alu -7 304 1 414 281 180 30 chr6 185062715 185063049 -4216505 - L1MB8 LINE L1 -297 5881 5498 631 278 44 50 chr6 185063053 185063468 -4216086 - L1MB8 LINE L1 -714 5450 5030 211 208 21 0 chr6 185064642 185064690 -4214864 + L2 LINE L2 3265 3313 0 213 286 250 7 chr6 185066480 185066620 -4212934 - MER5B DNA MER1_type -4 174 1 362 345 20 18 chr6 185067076 185067305 -4212249 - MIR SINE MIR 0 262 34 2230 108 0 16 chr6 185068120 185068435 -4211119 - AluSg SINE Alu 0 310 1 251 298 33 8 chr6 185068499 185068620 -4210934 + MIR3 SINE MIR 45 168 -40 1859 198 35 43 chr6 185070373 185070882 -4208672 - MLT1D LTR MaLR 0 505 1 2384 146 28 31 chr6 185071021 185071479 -4208075 - MSTB2 LTR MaLR 0 457 1 2209 95 41 0 chr6 185072465 185072759 -4206795 - AluY SINE Alu -5 306 1 219 324 48 9 chr6 185075200 185075305 -4204249 + MIR SINE MIR 46 154 -108 246 330 11 0 chr6 185075322 185075413 -4204141 + (TATG)n Simple_repeat Simple_repeat 4 95 0 2311 79 7 0 chr6 185075897 185076200 -4203354 + L1PB1 LINE L1 5846 6150 -1 221 283 0 63 chr6 185076880 185077071 -4202483 + C-rich Low_complexity Low_complexity 1 179 0 262 371 0 0 chr6 185077289 185077456 -4202098 + GA-rich Low_complexity Low_complexity 2 168 0 * 266 367 0 6 chr6 185077397 185077577 -4201977 + (CGGA)n Simple_repeat Simple_repeat 2 180 0 2220 85 9 58 chr6 185078686 185079014 -4200540 - AluSx SINE Alu 0 312 1 186 129 32 0 chr6 185079673 185079704 -4199850 - L2 LINE L2 -19 3253 3222 243 297 25 42 chr6 185079757 185079875 -4199679 - MIR SINE MIR -138 124 9 4653 139 80 104 chr6 185079969 185080730 -4198824 + Tigger3b DNA MER2_type 3 729 -2299 2313 66 14 0 chr6 185080730 185081018 -4198536 + AluY SINE Alu 1 292 -19 4653 139 80 104 chr6 185081018 185081414 -4198140 + Tigger3b DNA MER2_type 729 1133 -98 721 241 0 0 chr6 185081618 185081763 -4197791 + Tigger3b DNA MER2_type 1087 1231 0 1760 124 6 89 chr6 185082021 185082335 -4197219 + AluSx SINE Alu 2 289 -23 233 250 60 35 chr6 185083552 185083668 -4195886 - L1ME4a LINE L1 -18 6103 5985 239 219 16 16 chr6 185084034 185084098 -4195456 - L2 LINE L2 0 3313 3250 380 186 0 12 chr6 185087207 185087293 -4192261 - MIR SINE MIR -5 257 173 2469 88 0 0 chr6 185087614 185087920 -4191634 + AluY SINE Alu 1 306 -5 489 202 46 0 chr6 185089667 185089776 -4189778 - MER46C DNA MER2_type 0 338 225 438 218 0 0 chr6 185090662 185090772 -4188782 + (ATGGTG)n Simple_repeat Simple_repeat 4 113 0 374 202 0 19 chr6 185090828 185090932 -4188622 + (ATGGTG)n Simple_repeat Simple_repeat 5 106 0 312 233 126 37 chr6 185091061 185091197 -4188357 - MIR SINE MIR -62 146 34 252 0 0 0 chr6 185091253 185091281 -4188273 + (CA)n Simple_repeat Simple_repeat 1 28 0 497 251 152 62 chr6 185092518 185092729 -4186825 + MIR SINE MIR 23 252 -10 30 59 0 0 chr6 185092853 185092904 -4186650 + AT_rich Low_complexity Low_complexity 1 51 0 253 309 48 0 chr6 185093650 185093734 -4185820 + L2 LINE L2 3193 3280 -33 241 258 0 30 chr6 185094070 185094136 -4185418 - L1MC5 LINE L1 -53 7908 7845 583 270 40 45 chr6 185095245 185095445 -4184109 - MER46C DNA MER2_type -2 336 138 868 158 99 10 chr6 185096662 185096864 -4182690 + L1MD3 LINE L1 7776 7995 0 260 309 0 0 chr6 185096919 185096987 -4182567 + L2 LINE L2 3246 3313 0 218 326 109 29 chr6 185097664 185097802 -4181752 + MIR SINE MIR 111 259 -3 293 290 75 0 chr6 185097914 185098021 -4181533 + MIR SINE MIR 99 213 -49 393 285 85 20 chr6 185098500 185098700 -4180854 - L1ME LINE L1 -532 5638 5426 1447 100 20 44 chr6 185098816 185099067 -4180487 - L1MA9 LINE L1 -15 6297 6053 189 196 0 0 chr6 185099089 185099140 -4180414 + (TTA)n Simple_repeat Simple_repeat 2 52 0 11744 174 38 33 chr6 185099172 185099458 -4180096 - L1MA5A LINE L1 -249 7008 6725 1977 127 0 11 chr6 185099458 185099742 -4179812 + AluY SINE Alu 1 281 -30 11744 174 38 33 chr6 185099742 185101242 -4178312 - L1MA5A LINE L1 -532 6725 5270 7344 22 0 0 chr6 185101242 185102096 -4177458 + L1PA3 LINE L1 5321 6176 0 11744 174 38 33 chr6 185102096 185103544 -4176010 - L1MA5A LINE L1 -1987 5270 3831 1246 220 107 0 chr6 185103539 185103866 -4175688 - L1MA5A LINE L1 -6668 362 1 * 1215 193 61 87 chr6 185104228 185104606 -4174948 + MLT2D LTR ERVL 1 368 -46 966 149 2 2 chr6 185104606 185104835 -4174719 + (CCTA)n Simple_repeat Simple_repeat 1 409 0 345 359 4 0 chr6 185104961 185105200 -4174354 + C-rich Low_complexity Low_complexity 1 240 0 299 216 40 0 chr6 185107661 185107735 -4171819 - MIR SINE MIR -89 119 43 1171 222 79 12 chr6 185108329 185108671 -4170883 - MLT1A1 LTR MaLR 0 365 1 363 271 39 16 chr6 185113124 185113253 -4166301 - L2 LINE L2 -3 3269 3138 390 197 14 0 chr6 185113607 185113678 -4165876 + MLT1D LTR MaLR 4 75 -430 358 196 167 0 chr6 185113863 185113965 -4165589 + MLT1D LTR MaLR 387 505 0 21 36 0 0 chr6 185114060 185114088 -4165466 + AT_rich Low_complexity Low_complexity 1 28 0 240 272 99 0 chr6 185114423 185114504 -4165050 - Charlie8 DNA MER1_type -1960 457 369 868 249 50 12 chr6 185114708 185114949 -4164605 - Charlie1 DNA MER1_type -927 1834 1585 842 289 47 18 chr6 185114949 185115333 -4164221 - Charlie1a DNA MER1_type -1055 400 6 34 93 0 0 chr6 185115704 185115801 -4163753 + AT_rich Low_complexity Low_complexity 1 97 0 273 254 32 0 chr6 185116368 185116431 -4163123 - L2 LINE L2 -3 3269 3205 869 146 0 0 chr6 185116748 185116871 -4162683 + AluJb SINE Alu 1 123 -189 498 17 0 0 chr6 185119928 185119987 -4159567 + (TGAA)n Simple_repeat Simple_repeat 2 60 0 254 279 51 0 chr6 185121113 185121192 -4158362 + MER5A DNA MER1_type 86 168 -21 270 0 0 0 chr6 185122630 185122660 -4156894 + (TG)n Simple_repeat Simple_repeat 2 31 0 1152 237 65 4 chr6 185123893 185124212 -4155342 + MER82 DNA MER2_type 1 361 -292 294 154 309 60 chr6 185124221 185124370 -4155184 - L1MB3 LINE L1 -7 6176 5991 2117 107 7 3 chr6 185124539 185124848 -4154706 + L1PB1 LINE L1 5766 6075 -76 1031 238 48 31 chr6 185124850 185124896 -4154658 + MER82 DNA MER2_type 351 395 -258 2389 90 7 0 chr6 185124896 185125206 -4154348 + AluSp SINE Alu 1 312 -1 1031 238 48 31 chr6 185125206 185125449 -4154105 + MER82 DNA MER2_type 395 645 -8 360 281 162 9 chr6 185125957 185126167 -4153387 - L2 LINE L2 0 3313 3072 2213 108 3 3 chr6 185127401 185127697 -4151857 - AluSx SINE Alu -16 296 1 26 0 0 0 chr6 185128332 185128358 -4151196 + AT_rich Low_complexity Low_complexity 1 26 0 275 203 216 33 chr6 185129380 185129533 -4150021 + L1ME LINE L1 5678 5858 -263 4384 192 34 8 chr6 185129709 185130659 -4148895 + L1M2 LINE L1 2032 3005 -4561 721 175 32 3 chr6 185130685 185130885 -4148669 + L1M2 LINE L1 3466 3674 -3891 1623 121 0 0 chr6 185131110 185131350 -4148204 - AluYa5 SINE Alu 0 311 72 772 127 9 43 chr6 185131455 185131684 -4147870 + (CACCAT)n Simple_repeat Simple_repeat 1 221 0 899 165 0 16 chr6 185131711 185131893 -4147661 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 464 176 10 0 chr6 185131870 185131972 -4147582 + (CAT)n Simple_repeat Simple_repeat 1 103 0 * 1087 183 111 108 chr6 185134063 185134305 -4145249 + MER66A LTR ERV1 97 267 -211 2131 94 44 14 chr6 185134305 185134602 -4144952 + AluY SINE Alu 1 306 -5 1087 183 111 108 chr6 185134602 185134815 -4144739 + MER66A LTR ERV1 267 478 0 248 298 32 21 chr6 185134857 185134951 -4144603 + MLT1E3 LTR MaLR 509 603 -21 22 0 0 0 chr6 185135973 185135995 -4143559 + AT_rich Low_complexity Low_complexity 1 22 0 198 209 0 0 chr6 185137015 185137058 -4142496 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 509 281 92 11 chr6 185137089 185137274 -4142280 + MIR SINE MIR 15 214 -48 283 253 273 42 chr6 185138737 185139137 -4140417 - L1MC4a LINE L1 -1637 6171 5680 500 253 174 21 chr6 185139199 185139389 -4140165 - L1MC4a LINE L1 -2267 5541 5323 2174 97 14 0 chr6 185139421 185139710 -4139844 - AluSg SINE Alu -17 293 1 255 318 40 0 chr6 185140088 185140236 -4139318 - L1MC4a LINE L1 -1299 4847 4694 2018 143 13 0 chr6 185140633 185140933 -4138621 + AluSg SINE Alu 1 304 -6 967 133 0 11 chr6 185140959 185141140 -4138414 + (GAA)n Simple_repeat Simple_repeat 2 180 0 333 100 0 0 chr6 185141143 185141193 -4138361 + (GGA)n Simple_repeat Simple_repeat 3 52 0 414 254 44 0 chr6 185143168 185143282 -4136272 - MIR SINE MIR -90 172 54 1444 189 99 13 chr6 185143405 185143718 -4135836 + MER61A LTR ERV1 4 343 0 25 110 0 0 chr6 185144154 185144263 -4135291 + AT_rich Low_complexity Low_complexity 1 109 0 2920 154 25 4 chr6 185144364 185144851 -4134703 + LOR1a LTR ERV1 1 497 0 2248 114 0 0 chr6 185145772 185146071 -4133483 - AluSx SINE Alu -13 299 1 413 234 28 0 chr6 185146299 185146406 -4133148 - MIR SINE MIR -16 246 137 330 287 57 0 chr6 185146616 185146738 -4132816 + MIR SINE MIR 40 168 -94 4632 115 132 139 chr6 185146884 185148298 -4131256 - pTR5 LTR ERV1 0 2438 743 4542 176 29 16 chr6 185149712 185150915 -4128639 - L1MB7 LINE L1 0 6184 4962 902 228 40 5 chr6 185151563 185151765 -4127789 + MER3 DNA MER1_type 1 209 0 21 36 0 0 chr6 185152307 185152335 -4127219 + AT_rich Low_complexity Low_complexity 1 28 0 236 51 0 51 chr6 185152762 185152801 -4126753 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chr6 185154103 185154124 -4125430 + (A)n Simple_repeat Simple_repeat 1 21 0 2411 89 3 3 chr6 185154846 185155159 -4124395 + AluSp SINE Alu 1 313 0 27 29 0 0 chr6 185155811 185155845 -4123709 + AT_rich Low_complexity Low_complexity 1 34 0 28 0 0 0 chr6 185156105 185156133 -4123421 + AT_rich Low_complexity Low_complexity 1 28 0 804 196 43 27 chr6 185157450 185157634 -4121920 - L1MB1 LINE L1 0 6168 5982 1171 158 15 20 chr6 185157635 185157831 -4121723 - AluJo SINE Alu -89 223 29 945 199 138 13 chr6 185157858 185158089 -4121465 - L1MB1 LINE L1 -349 5963 5704 232 319 200 5 chr6 185159032 185159402 -4120152 + L2 LINE L2 1911 2352 -962 381 339 54 23 chr6 185160457 185160678 -4118876 - MIR SINE MIR -1 261 34 357 205 0 18 chr6 185160724 185160890 -4118664 + (CA)n Simple_repeat Simple_repeat 1 163 0 312 231 0 16 chr6 185160905 185161232 -4118322 + (CA)n Simple_repeat Simple_repeat 1 321 0 2089 104 17 7 chr6 185162054 185162184 -4117370 + AluSq SINE Alu 1 128 -185 255 31 0 0 chr6 185162184 185162216 -4117338 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2089 104 17 7 chr6 185162216 185162374 -4117180 + AluSq SINE Alu 128 292 -21 2406 73 30 0 chr6 185162694 185162996 -4116558 - AluY SINE Alu 0 311 1 360 253 18 73 chr6 185163338 185163593 -4115961 - L1MC4 LINE L1 -370 7672 7331 372 266 73 0 chr6 185163593 185163717 -4115837 + MER94 DNA DNA 1 133 -1 364 254 22 15 chr6 185163916 185164050 -4115504 - L1MC4 LINE L1 -811 7231 7097 180 0 0 0 chr6 185165320 185165340 -4114214 + (CA)n Simple_repeat Simple_repeat 1 20 0 2066 113 22 0 chr6 185165343 185165618 -4113936 - AluSx SINE Alu -31 281 1 2013 157 0 0 chr6 185167873 185168167 -4111387 + AluSx SINE Alu 1 294 -18 377 219 0 0 chr6 185169152 185169234 -4110320 - MER69 DNA AcHobo -2 2524 2443 319 330 53 24 chr6 185169854 185170063 -4109491 + L2 LINE L2 2143 2357 -957 184 379 68 15 chr6 185170119 185170251 -4109303 + L2 LINE L2 3133 3271 -1 207 0 0 0 chr6 185171014 185171037 -4108517 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 232 229 0 52 chr6 185171351 185171447 -4108107 + G-rich Low_complexity Low_complexity 3 93 0 252 0 0 0 chr6 185172653 185172681 -4106873 + (A)n Simple_repeat Simple_repeat 1 28 0 338 302 77 18 chr6 185175012 185175181 -4104373 + MIR3 SINE MIR 17 195 -13 2307 102 3 0 chr6 185177554 185177857 -4101697 + AluSg SINE Alu 1 304 -6 2247 108 7 3 chr6 185178455 185178761 -4100793 - AluSg SINE Alu -3 307 1 232 227 111 24 chr6 185179368 185179522 -4100032 - MIR SINE MIR -56 206 41 2964 3 0 0 chr6 185179944 185180255 -4099299 - AluYa5 SINE Alu 0 311 1 14960 182 34 16 chr6 185180462 185185090 -4094464 + L1MA4 LINE L1 2232 6942 0 269 171 125 80 chr6 185185059 185185147 -4094407 + L1ME LINE L1 6432 6523 -283 * 195 306 102 0 chr6 185187209 185187307 -4092247 + MIR SINE MIR 43 150 -112 183 139 0 0 chr6 185189565 185189601 -4089953 + (T)n Simple_repeat Simple_repeat 1 36 0 528 138 24 65 chr6 185191382 185191505 -4088049 - L1MA8 LINE L1 -10 6281 6164 644 264 44 22 chr6 185191607 185191834 -4087720 - MIR SINE MIR 0 262 31 2254 190 85 8 chr6 185192449 185192918 -4086636 + MLT1D LTR MaLR 1 505 0 433 255 31 25 chr6 185193243 185193404 -4086150 - MLT1C LTR MaLR -220 247 86 1173 163 14 37 chr6 185193404 185193619 -4085935 + MER2 DNA MER2_type 1 210 -135 232 205 154 26 chr6 185193721 185193799 -4085755 - MLT1C LTR MaLR -374 93 6 371 177 0 0 chr6 185194173 185194235 -4085319 + LTR41 LTR ERVL 712 773 0 2049 95 19 44 chr6 185195234 185195551 -4084003 - AluSc SINE Alu 0 309 1 254 297 174 36 chr6 185196092 185196230 -4083324 + L2 LINE L2 3116 3272 0 2137 133 7 0 chr6 185196805 185197106 -4082448 + AluSx SINE Alu 2 304 -8 1862 166 10 0 chr6 185197112 185197420 -4082134 + AluSx SINE Alu 2 312 0 249 282 8 94 chr6 185198284 185198401 -4081153 - MIR SINE MIR -84 124 18 1874 116 96 39 chr6 185199031 185199386 -4080168 - THE1C LTR MaLR 0 375 1 906 292 131 37 chr6 185200333 185201011 -4078543 + L1MEd LINE L1 274 1015 -5104 931 321 64 6 chr6 185201029 185201387 -4078167 + L2 LINE L2 1 379 -2935 1270 301 86 31 chr6 185201387 185202132 -4077422 + L2 LINE L2 2348 3050 -263 204 40 0 0 chr6 185202132 185202157 -4077397 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 2028 112 4 4 chr6 185202159 185202435 -4077119 - AluSc SINE Alu -33 276 1 1270 301 86 31 chr6 185202435 185202550 -4077004 + L2 LINE L2 3050 3275 -38 380 271 33 8 chr6 185202551 185202673 -4076881 + L1MEd LINE L1 1024 1148 -4971 1281 188 18 29 chr6 185202781 185203058 -4076496 - MER106B DNA MER1_type -765 294 21 466 62 71 0 chr6 185203705 185203818 -4075736 + CT-rich Low_complexity Low_complexity 2 122 0 273 114 79 0 chr6 185203920 185204034 -4075520 + (CTCA)n Simple_repeat Simple_repeat 2 124 0 679 275 126 0 chr6 185207004 185207226 -4072328 - L1MC4a LINE L1 -5 7803 7554 394 209 30 157 chr6 185207253 185207488 -4072066 - MIR SINE MIR -18 244 40 238 281 31 16 chr6 185207604 185207668 -4071886 + L2 LINE L2 3201 3265 -7 1160 313 75 20 chr6 185208046 185208637 -4070917 + L3 LINE CR1 499 1121 -456 405 306 119 6 chr6 185208776 185208936 -4070618 - MER5B DNA MER1_type 0 178 1 1405 224 67 59 chr6 185209025 185209485 -4070069 + MLT1C LTR MaLR 1 464 -3 212 366 71 9 chr6 185210153 185210265 -4069289 + L2 LINE L2 3133 3251 -21 2084 115 0 48 chr6 185210265 185210432 -4069122 - AluSx SINE Alu -13 299 152 2601 56 0 0 chr6 185210432 185210735 -4068819 - AluY SINE Alu -8 303 1 2084 115 0 48 chr6 185210735 185210881 -4068673 - AluSx SINE Alu -160 152 1 315 286 44 70 chr6 185211153 185211426 -4068128 - L2 LINE L2 -1039 2275 2010 207 309 73 48 chr6 185211776 185212132 -4067422 + L2 LINE L2 2427 2791 -523 324 266 168 40 chr6 185212713 185212886 -4066668 + L2 LINE L2 2855 3049 -264 316 269 90 41 chr6 185212921 185213066 -4066488 + L2 LINE L2 3159 3310 -3 366 332 36 51 chr6 185213311 185213585 -4065969 - L2 LINE L2 -1 3271 3002 2150 131 0 6 chr6 185214101 185214415 -4065139 + AluSx SINE Alu 1 312 0 299 119 0 17 chr6 185214441 185214500 -4065054 + (TC)n Simple_repeat Simple_repeat 1 58 0 219 288 76 43 chr6 185215214 185215398 -4064156 + L2 LINE L2 2655 2844 -470 2300 100 10 0 chr6 185215432 185215731 -4063823 + AluSp SINE Alu 1 302 -11 480 291 147 26 chr6 185216584 185216924 -4062630 + MLT1J2 LTR MaLR 69 449 -1 242 350 40 0 chr6 185216928 185217028 -4062526 + L2 LINE L2 2432 2535 -779 1882 327 149 10 chr6 185217099 185218351 -4061203 - L2 LINE L2 -525 2789 1365 22 35 0 0 chr6 185219186 185219215 -4060339 + AT_rich Low_complexity Low_complexity 1 29 0 630 109 25 8 chr6 185219863 185219982 -4059572 + CT-rich Low_complexity Low_complexity 4 124 0 24 91 0 0 chr6 185220082 185220148 -4059406 + AT_rich Low_complexity Low_complexity 1 66 0 233 155 48 30 chr6 185220156 185220324 -4059230 + (TA)n Simple_repeat Simple_repeat 2 172 0 42 36 0 0 chr6 185220364 185220420 -4059134 + AT_rich Low_complexity Low_complexity 1 56 0 266 187 45 0 chr6 185220447 185220602 -4058952 + (TA)n Simple_repeat Simple_repeat 1 162 0 256 161 62 0 chr6 185220619 185220700 -4058854 + (TA)n Simple_repeat Simple_repeat 1 86 0 546 239 62 8 chr6 185220707 185220837 -4058717 - MER58A DNA MER1_type 0 138 2 2343 252 29 41 chr6 185220904 185221741 -4057813 + L1M4 LINE L1 2252 3078 -3068 277 263 70 58 chr6 185221848 185222004 -4057550 + L1M4b LINE L1 89 246 -6613 426 213 7 182 chr6 185222584 185222875 -4056679 + L1M4b LINE L1 1206 1445 -5414 328 130 0 0 chr6 185222872 185222926 -4056628 - L1M1 LINE L1 -5234 2331 2278 * 243 279 58 0 chr6 185222929 185223033 -4056521 - L1M4 LINE L1 -852 5294 5185 428 233 0 116 chr6 185223038 185223074 -4056480 - L1M4 LINE L1 -1078 5068 5029 1052 259 86 36 chr6 185223074 185223572 -4055982 - LTR33A LTR ERVL 0 523 1 428 233 0 116 chr6 185223572 185223707 -4055847 - L1M4 LINE L1 -1117 5029 4917 2619 110 16 16 chr6 185223734 185224107 -4055447 + THE1C LTR MaLR 1 373 -2 21 0 0 0 chr6 185224132 185224153 -4055401 + AT_rich Low_complexity Low_complexity 1 21 0 1796 174 10 10 chr6 185224451 185224761 -4054793 + AluJb SINE Alu 1 310 -2 1550 198 23 20 chr6 185225603 185225946 -4053608 - MLT1C LTR MaLR -122 345 2 6333 97 0 6 chr6 185226009 185226890 -4052664 - L1PB1 LINE L1 -1 6150 5275 11077 203 14 11 chr6 185226893 185229269 -4050285 - L1PB1 LINE L1 -1544 4602 2219 24 53 0 0 chr6 185229348 185229386 -4050168 + AT_rich Low_complexity Low_complexity 1 38 0 4535 152 18 18 chr6 185229686 185230424 -4049130 + LTR39 LTR ERV1 46 783 0 459 207 165 80 chr6 185230425 185230662 -4048892 - L1MCc LINE L1 -5002 1421 1165 1138 253 81 39 chr6 185230842 185231273 -4048281 - L1MCc LINE L1 -5950 473 25 2104 117 3 0 chr6 185232085 185232390 -4047164 + AluSx SINE Alu 1 306 0 258 323 132 6 chr6 185232560 185232727 -4046827 + MIR3 SINE MIR 3 190 -18 312 205 26 51 chr6 185233616 185233694 -4045860 + L2 LINE L2 3232 3307 -6 194 195 91 78 chr6 185233897 185233974 -4045580 - MIR SINE MIR -10 252 175 231 278 71 48 chr6 185233980 185234106 -4045448 - LTR67 LTR ERVL 0 557 429 511 176 0 0 chr6 185234481 185234572 -4044982 - MIR SINE MIR -100 162 72 252 325 146 46 chr6 185234646 185235015 -4044539 - L2 LINE L2 -6 3307 2902 26 0 0 0 chr6 185235192 185235218 -4044336 + AT_rich Low_complexity Low_complexity 1 26 0 439 229 9 0 chr6 185235748 185235853 -4043701 - MLT1I LTR MaLR 0 409 304 314 244 35 43 chr6 185235985 185236100 -4043454 - MLT1I LTR MaLR -287 122 9 263 228 174 22 chr6 185236218 185236310 -4043244 - LTR33A LTR ERVL 0 523 418 626 272 38 16 chr6 185236523 185236707 -4042847 + L1MC4 LINE L1 7713 7900 -142 489 274 62 93 chr6 185236791 185237210 -4042344 - ERVL LTR ERVL -631 5133 4728 1010 252 44 34 chr6 185237260 185237637 -4041917 - L1ME1 LINE L1 0 6253 5833 * 4395 265 46 23 chr6 185237632 185239253 -4040301 - L1ME1 LINE L1 -1397 4818 3160 497 43 0 14 chr6 185239253 185239322 -4040232 + (TTTC)n Simple_repeat Simple_repeat 4 71 0 1746 153 8 0 chr6 185239322 185239584 -4039970 - AluSx SINE Alu -48 264 1 533 244 48 18 chr6 185239604 185239772 -4039782 - L1ME1 LINE L1 -3355 2860 2688 1669 230 31 42 chr6 185239772 185240219 -4039335 + MLT1D LTR MaLR 2 443 -62 603 252 43 50 chr6 185240222 185240504 -4039050 - L1MD2 LINE L1 -12 6347 6068 1038 188 0 73 chr6 185240507 185240752 -4038802 + AluJo SINE Alu 81 307 -5 344 162 26 86 chr6 185240776 185240893 -4038661 - L1MD2 LINE L1 -298 6061 5952 956 161 19 0 chr6 185240905 185241066 -4038488 - L1MC1 LINE L1 0 6333 6170 314 242 0 0 chr6 185241066 185241132 -4038422 + MLT1D LTR MaLR 440 505 0 3141 265 53 33 chr6 185241132 185243688 -4035866 - L1ME1 LINE L1 -3522 2693 37 288 316 35 9 chr6 185244520 185244634 -4034920 - LTR16A LTR ERVL -159 291 175 423 279 38 27 chr6 185244930 185245113 -4034441 + L2 LINE L2 2398 2582 -732 815 288 46 52 chr6 185245113 185245721 -4033833 + L2 LINE L2 2708 3305 -8 1964 147 17 0 chr6 185247784 185248084 -4031470 - AluSx SINE Alu -5 307 3 216 302 179 0 chr6 185248249 185248355 -4031199 + L3 LINE CR1 494 618 -959 189 237 102 17 chr6 185248632 185248691 -4030863 + L3 LINE CR1 982 1045 -532 180 200 322 11 chr6 185248773 185248863 -4030691 + L3 LINE CR1 1177 1294 -283 5402 131 11 7 chr6 185248893 185249997 -4029557 - L1P4 LINE L1 -578 5590 4481 606 151 0 0 chr6 185250097 185250203 -4029351 + CT-rich Low_complexity Low_complexity 3 108 0 342 232 30 10 chr6 185250529 185250628 -4028926 - MER112 DNA MER1_type -1 259 159 206 286 0 26 chr6 185250881 185250958 -4028596 - MIR3 SINE MIR -52 156 82 536 219 66 15 chr6 185254089 185254226 -4025328 + L2 LINE L2 3168 3311 -2 196 289 0 19 chr6 185254853 185254905 -4024649 + MIR SINE MIR 20 70 -192 225 0 0 0 chr6 185255085 185255110 -4024444 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 293 55 455 0 chr6 185255184 185255239 -4024315 - MADE1 DNA Mariner 0 80 1 21 0 0 0 chr6 185256056 185256077 -4023477 + AT_rich Low_complexity Low_complexity 1 21 0 430 98 63 35 chr6 185256109 185256283 -4023271 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 243 188 0 0 chr6 185256296 185256344 -4023210 + (CATA)n Simple_repeat Simple_repeat 3 50 0 1904 274 38 37 chr6 185256352 185257004 -4022550 - MER82 DNA MER2_type 0 653 1 1687 176 132 0 chr6 185257028 185257347 -4022207 + MER46B DNA MER2_type 1 236 0 333 0 0 0 chr6 185257348 185257385 -4022169 + (CA)n Simple_repeat Simple_repeat 2 38 0 1330 198 101 16 chr6 185257386 185257694 -4021860 + MER2 DNA MER2_type 2 335 -10 24 0 0 0 chr6 185259421 185259445 -4020109 + AT_rich Low_complexity Low_complexity 1 24 0 272 289 66 8 chr6 185261018 185261139 -4018415 - MLT1L LTR MaLR -22 593 466 426 165 59 12 chr6 185262266 185262351 -4017203 - L1MC1 LINE L1 -2 6331 6243 664 220 13 108 chr6 185263556 185263788 -4015766 - MER58C DNA MER1_type -2 213 4 567 194 29 91 chr6 185264124 185264299 -4015255 + MER58A DNA MER1_type 42 205 -19 249 83 0 0 chr6 185264618 185264654 -4014900 + (CA)n Simple_repeat Simple_repeat 2 37 0 253 229 163 72 chr6 185264812 185264965 -4014589 + L2 LINE L2 3142 3308 -5 1282 288 99 33 chr6 185265404 185266269 -4013285 - L2 LINE L2 -1 3312 2392 642 208 0 0 chr6 185267987 185268107 -4011447 + AluJo SINE Alu 15 134 -178 4344 217 75 15 chr6 185268783 185270133 -4009421 + L1MD2 LINE L1 4932 6349 -10 1687 74 48 0 chr6 185271071 185271301 -4008253 + L1PA7 LINE L1 5911 6151 -3 315 0 0 0 chr6 185271723 185271758 -4007796 + (TA)n Simple_repeat Simple_repeat 1 35 0 2028 125 0 10 chr6 185271762 185272076 -4007478 - AluSx SINE Alu 0 311 1 265 193 37 28 chr6 185272109 185272218 -4007336 + (TA)n Simple_repeat Simple_repeat 1 110 0 274 267 22 0 chr6 185273059 185273149 -4006405 + MIR SINE MIR 54 145 -63 264 319 239 4 chr6 185275186 185275462 -4004092 + L2 LINE L2 2967 3307 -6 2170 136 0 0 chr6 185276419 185276713 -4002841 - AluSq SINE Alu -19 294 1 1136 81 0 0 chr6 185276713 185276849 -4002705 - AluSq/x SINE Alu -177 136 1 1991 119 3 55 chr6 185278066 185278378 -4001176 - AluSx SINE Alu -16 296 1 248 336 18 101 chr6 185279118 185279404 -4000150 - L2 LINE L2 -85 3187 2926 2019 172 25 16 chr6 185279711 185280077 -3999477 + MSTD LTR MaLR 28 396 0 305 91 36 0 chr6 185281672 185281727 -3997827 + L2 LINE L2 3256 3312 -1 195 42 0 0 chr6 185282837 185282861 -3996693 + (CA)n Simple_repeat Simple_repeat 2 25 0 659 237 45 65 chr6 185282953 185283242 -3996312 + L1MC4a LINE L1 5639 5812 -309 422 135 42 42 chr6 185283566 185283662 -3995892 - L1PB2 LINE L1 -3 6148 6053 199 358 42 17 chr6 185283803 185283923 -3995631 - MIR3 SINE MIR -72 136 14 547 248 73 23 chr6 185285125 185285343 -3994211 + MIR SINE MIR 19 247 -15 2241 162 89 2 chr6 185285538 185285932 -3993622 + MSTA LTR MaLR 1 428 0 228 178 0 0 chr6 185286346 185286391 -3993163 - LTR66 LTR ERVL -172 438 394 345 181 108 24 chr6 185286829 185286912 -3992642 + MER63 DNA MER1_type 6 721 -115 1296 56 0 24 chr6 185287223 185287471 -3992083 + (GAAA)n Simple_repeat Simple_repeat 4 243 0 2151 235 26 16 chr6 185287476 185287966 -3991588 - MLT2B2 LTR ERVL -20 495 1 2488 123 33 6 chr6 185288048 185288413 -3991141 - THE1C LTR MaLR 0 375 1 1224 228 42 52 chr6 185289088 185289536 -3990018 + MLT1F1 LTR MaLR 1 538 -29 1753 161 101 15 chr6 185289536 185289872 -3989682 + MLT1A1 LTR MaLR 1 365 0 1224 228 42 52 chr6 185289872 185289900 -3989654 + MLT1F1 LTR MaLR 538 565 -2 974 124 0 13 chr6 185290075 185290228 -3989326 - L1 LINE L1 -949 5197 5047 1257 145 28 73 chr6 185290228 185290323 -3989231 + L1MA8 LINE L1 6013 6111 -180 2403 84 7 0 chr6 185290323 185290631 -3988923 + AluY SINE Alu 1 310 -1 1257 145 28 73 chr6 185290631 185290822 -3988732 + L1MA8 LINE L1 6111 6288 -3 390 234 113 135 chr6 185291060 185291984 -3987570 - L1MC4 LINE L1 -314 7647 6745 345 140 0 0 chr6 185292164 185292221 -3987333 + (TA)n Simple_repeat Simple_repeat 1 57 0 26 50 0 0 chr6 185294261 185294301 -3985253 + AT_rich Low_complexity Low_complexity 1 40 0 226 241 0 0 chr6 185295935 185295993 -3983561 - L2 LINE L2 0 3272 3215 447 284 96 26 chr6 185296058 185296287 -3983267 - MIR SINE MIR -3 259 15 2373 101 0 0 chr6 185297413 185297709 -3981845 + AluSx SINE Alu 1 296 -16 2934 187 59 26 chr6 185297709 185298359 -3981195 - L1MC2 LINE L1 -12 6332 5658 204 285 80 22 chr6 185299410 185299547 -3980007 + L2 LINE L2 2592 2736 -578 1731 188 10 3 chr6 185301302 185301605 -3977949 + AluJo SINE Alu 1 305 -7 21 36 0 0 chr6 185301615 185301643 -3977911 + AT_rich Low_complexity Low_complexity 1 28 0 645 70 0 12 chr6 185302476 185302562 -3976992 + AluSp/q SINE Alu 190 274 -39 1208 70 19 16 chr6 185302565 185302881 -3976673 + (GAAA)n Simple_repeat Simple_repeat 1 317 0 318 250 125 77 chr6 185306041 185306249 -3973305 - MIR SINE MIR -11 251 34 337 285 65 8 chr6 185307556 185307679 -3971875 + MIR SINE MIR 56 185 -77 232 351 34 40 chr6 185310728 185310876 -3968678 - L2 LINE L2 -8 3264 3118 22 0 0 0 chr6 185310978 185311000 -3968554 + AT_rich Low_complexity Low_complexity 1 22 0 2061 120 7 7 chr6 185311321 185311613 -3967941 + AluSq SINE Alu 1 292 -21 359 287 102 6 chr6 185313554 185313654 -3965900 + L1MC4 LINE L1 6516 6638 -1404 563 54 81 0 chr6 185313654 185313728 -3965826 - MADE1 DNA Mariner 0 80 1 359 287 102 6 chr6 185313728 185313784 -3965770 + L1MC4 LINE L1 6638 6687 -1355 1331 231 285 19 chr6 185313829 185314608 -3964946 + L1MC4a LINE L1 6937 7857 -5 2090 117 28 3 chr6 185314969 185315260 -3964294 + AluSx SINE Alu 1 298 -14 27 0 0 0 chr6 185315929 185315956 -3963598 + AT_rich Low_complexity Low_complexity 1 27 0 204 192 0 39 chr6 185317036 185317114 -3962440 + C-rich Low_complexity Low_complexity 2 76 0 2098 135 20 0 chr6 185317241 185317544 -3962010 + AluSq SINE Alu 1 309 -4 774 165 8 0 chr6 185319430 185319551 -3960003 + FLAM_C SINE Alu 3 124 -19 275 272 19 56 chr6 185319587 185319749 -3959805 - L2 LINE L2 -3 3310 3155 1175 236 111 39 chr6 185321860 185322293 -3957261 + L1ME3 LINE L1 5657 6120 -42 1217 270 137 20 chr6 185322502 185323043 -3956511 + L1MC4 LINE L1 7326 7929 -113 206 200 0 0 chr6 185323043 185323078 -3956476 + polypurine Low_complexity Low_complexity 2 36 0 1129 249 77 12 chr6 185323093 185323430 -3956124 - LTR52 LTR ERVL -2 419 61 508 261 110 43 chr6 185324413 185324712 -3954842 + L1MC4a LINE L1 5613 5931 -1877 207 0 0 0 chr6 185326977 185327000 -3952554 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 198 0 0 0 chr6 185327173 185327195 -3952359 + (CA)n Simple_repeat Simple_repeat 2 23 0 22 56 0 0 chr6 185328536 185328572 -3950982 + AT_rich Low_complexity Low_complexity 1 36 0 215 337 0 21 chr6 185330378 185330473 -3949081 + G-rich Low_complexity Low_complexity 1 93 0 498 91 0 0 chr6 185330605 185330682 -3948872 + (TC)n Simple_repeat Simple_repeat 1 77 0 255 61 0 0 chr6 185332068 185332101 -3947453 + (TG)n Simple_repeat Simple_repeat 2 34 0 1576 295 57 29 chr6 185333644 185334404 -3945150 + L2 LINE L2 1644 2424 -890 491 266 114 52 chr6 185334440 185334827 -3944727 + L2 LINE L2 2836 3246 -67 207 0 0 0 chr6 185334970 185334993 -3944561 + (TG)n Simple_repeat Simple_repeat 2 24 0 238 250 0 28 chr6 185335060 185335132 -3944422 + T-rich Low_complexity Low_complexity 5 74 0 1177 196 119 36 chr6 185336926 185337263 -3942291 + MLT1A1 LTR MaLR 1 365 0 2654 287 106 39 chr6 185337728 185338239 -3941315 - L1MC4 LINE L1 -1 8041 7566 1843 158 0 10 chr6 185338239 185338536 -3941018 - AluJb SINE Alu -17 295 2 2654 287 106 39 chr6 185338536 185340240 -3939314 - L1MC4 LINE L1 -476 7566 5684 496 308 31 10 chr6 185340243 185340438 -3939116 - L1MC4 LINE L1 -2062 5746 5548 2200 148 122 10 chr6 185340504 185340889 -3938665 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr6 185340895 185340916 -3938638 + AT_rich Low_complexity Low_complexity 1 21 0 1861 153 0 0 chr6 185341120 185341395 -3938159 + AluSx SINE Alu 3 277 -35 249 33 0 0 chr6 185341395 185341425 -3938129 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 362 298 25 8 chr6 185341438 185341559 -3937995 + MIR SINE MIR 34 156 -106 409 121 24 0 chr6 185341627 185341710 -3937844 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 487 317 11 67 chr6 185341761 185341941 -3937613 + MIR3 SINE MIR 32 201 -7 22 56 0 0 chr6 185342024 185342060 -3937494 + AT_rich Low_complexity Low_complexity 1 36 0 250 245 0 0 chr6 185342267 185342316 -3937238 + polypurine Low_complexity Low_complexity 3 51 0 541 105 35 42 chr6 185342316 185342459 -3937095 + GA-rich Low_complexity Low_complexity 2 143 0 182 318 65 58 chr6 185345905 185346182 -3933372 - L2 LINE L2 -340 2974 2696 245 135 0 0 chr6 185346532 185346569 -3932985 + MLT1J1 LTR MaLR 67 103 -343 819 237 12 0 chr6 185346996 185347169 -3932385 - MER45A DNA AcHobo 0 178 4 1397 209 163 27 chr6 185347593 185348034 -3931520 + MLT1D LTR MaLR 5 505 0 182 182 164 36 chr6 185348157 185348212 -3931342 + L2 LINE L2 2654 2715 -599 270 176 0 0 chr6 185348412 185348463 -3931091 + L1MC4 LINE L1 6653 6703 -1339 1917 213 49 8 chr6 185348476 185348976 -3930578 - L1MB3 LINE L1 -15 6168 5656 597 168 9 9 chr6 185349079 185349186 -3930368 - HERV15 LTR ERV1 -1329 7406 7300 40 37 0 0 chr6 185350207 185350261 -3929293 + GC_rich Low_complexity Low_complexity 1 54 0 495 233 0 0 chr6 185352963 185353092 -3926462 + (TG)n Simple_repeat Simple_repeat 1 129 0 1162 243 61 19 chr6 185354262 185354641 -3924913 - MLT1C LTR MaLR -6 461 67 1135 293 100 23 chr6 185355430 185355454 -3924100 - L2 LINE L2 0 3313 3292 2316 92 0 10 chr6 185355454 185355757 -3923797 + AluSx SINE Alu 1 300 -12 1135 293 100 23 chr6 185355757 185356528 -3923026 - L2 LINE L2 -21 3292 2450 1571 162 111 30 chr6 185356556 185356889 -3922665 - MLT1A1 LTR MaLR -5 360 1 1738 171 10 13 chr6 185356932 185357230 -3922324 + AluJo SINE Alu 2 298 -14 579 267 63 51 chr6 185357258 185357649 -3921905 + L1MEd LINE L1 895 1257 -4862 25 31 0 0 chr6 185359103 185359135 -3920419 + AT_rich Low_complexity Low_complexity 1 32 0 1687 247 102 35 chr6 185359146 185359665 -3919889 + MLT2B3 LTR ERVL 1 554 0 304 256 47 0 chr6 185359882 185359968 -3919586 + L1ME LINE L1 1064 1153 -5481 1760 274 78 42 chr6 185360006 185361399 -3918155 + L1ME LINE L1 1216 2558 -4086 225 0 0 0 chr6 185361399 185361424 -3918130 + (CA)n Simple_repeat Simple_repeat 2 26 0 1760 274 78 42 chr6 185361424 185361817 -3917737 + L1ME LINE L1 2558 3941 -2703 454 292 56 22 chr6 185361924 185362102 -3917452 + L1ME LINE L1 3940 4123 -2521 4218 189 78 8 chr6 185362223 185363079 -3916475 + L1ME1 LINE L1 219 1134 -5510 1549 245 89 22 chr6 185363097 185363208 -3916346 + L1ME1 LINE L1 4692 4794 -1850 4941 136 19 42 chr6 185363208 185364020 -3915534 + MER54B LTR ERVL 1 793 0 1549 245 89 22 chr6 185364020 185364504 -3915050 + L1ME1 LINE L1 4794 5327 -1317 2101 200 22 65 chr6 185364504 185365052 -3914502 + MLT2B3 LTR ERVL 1 409 -35 213 180 0 0 chr6 185365052 185365102 -3914452 + (TA)n Simple_repeat Simple_repeat 2 51 0 348 204 0 82 chr6 185365108 185365206 -3914348 + L1MC4 LINE L1 6614 6703 -1339 346 94 57 0 chr6 185365213 185365266 -3914288 + MLT2B1 LTR ERVL 464 519 -1 1595 263 64 25 chr6 185365268 185365710 -3913844 + L1ME1 LINE L1 5324 5747 -917 634 64 13 0 chr6 185365710 185365788 -3913766 + MADE1 DNA Mariner 1 79 -1 1595 263 64 25 chr6 185365788 185366291 -3913263 + L1ME1 LINE L1 5747 6295 -369 263 144 56 0 chr6 185366320 185366445 -3913109 + (TA)n Simple_repeat Simple_repeat 1 132 0 305 272 95 15 chr6 185366454 185366589 -3912965 - L1MB8 LINE L1 -203 5975 5831 493 144 38 24 chr6 185366597 185367105 -3912449 + (TA)n Simple_repeat Simple_repeat 1 515 0 313 213 113 40 chr6 185367105 185367255 -3912299 - L1MCa LINE L1 -4359 2067 1907 464 148 49 8 chr6 185367275 185367539 -3912015 + (TA)n Simple_repeat Simple_repeat 1 274 0 382 328 85 0 chr6 185367539 185367728 -3911826 + L1ME1 LINE L1 6317 6521 -143 272 240 24 32 chr6 185367734 185367833 -3911721 + L1ME1 LINE L1 6580 6675 -1 * 471 261 0 8 chr6 185367827 185367946 -3911608 + L1ME1 LINE L1 3494 3611 -2535 671 206 166 45 chr6 185367948 185368171 -3911383 + L1ME1 LINE L1 5602 5851 -311 718 185 47 181 chr6 185368173 185368405 -3911149 - MLT1A2 LTR MaLR -2 372 173 238 214 18 0 chr6 185368405 185368461 -3911093 + GA-rich Low_complexity Low_complexity 4 60 0 630 168 0 42 chr6 185368486 185368534 -3911020 - MLT1A2 LTR MaLR -251 114 66 3180 158 232 90 chr6 185368534 185369427 -3910127 - LTR28 LTR ERV1 0 1020 1 630 168 0 42 chr6 185369427 185369497 -3910057 - MLT1A2 LTR MaLR -299 66 1 614 290 104 7 chr6 185369497 185369776 -3909778 + L1ME1 LINE L1 5844 6149 -17 189 0 0 0 chr6 185370695 185370716 -3908838 + (T)n Simple_repeat Simple_repeat 1 21 0 238 111 93 37 chr6 185371219 185371273 -3908281 - LTR16A1 LTR ERVL -333 124 68 303 28 0 0 chr6 185372213 185372249 -3907305 + (TG)n Simple_repeat Simple_repeat 1 36 0 797 209 162 80 chr6 185373558 185373983 -3905571 + LTR40b LTR ERVL 1 460 -2 689 242 33 97 chr6 185374376 185374831 -3904723 + L1MEc LINE L1 1847 2272 -4124 2159 118 0 0 chr6 185376340 185376637 -3902917 - L1PB1 LINE L1 -3 6148 5852 1687 123 42 46 chr6 185376664 185376981 -3902573 + AluSx SINE Alu 1 316 0 460 323 8 0 chr6 185377077 185377210 -3902344 - MIR3 SINE MIR -17 191 58 969 239 0 39 chr6 185377681 185378140 -3901414 - MSTB-int LTR MaLR -1115 536 2 2268 169 64 17 chr6 185378141 185378548 -3901006 - MSTB LTR MaLR 0 426 1 204 279 18 72 chr6 185379857 185379968 -3899586 - MIR SINE MIR -138 124 20 227 281 146 0 chr6 185383155 185383244 -3896310 - MIR SINE MIR -12 250 149 2034 215 48 42 chr6 185383674 185383910 -3895644 + L1MCa LINE L1 779 1012 -5414 1737 163 78 0 chr6 185383910 185384241 -3895313 + L1MA8 LINE L1 5930 6286 -5 2034 215 48 42 chr6 185384241 185384604 -3894950 + L1MCa LINE L1 1012 1382 -5044 880 251 69 24 chr6 185384618 185384996 -3894558 - L1M4 LINE L1 -3552 2594 2200 2129 131 0 6 chr6 185385704 185386016 -3893538 + AluSg SINE Alu 1 310 0 294 290 10 0 chr6 185387337 185387437 -3892117 + MER5A DNA MER1_type 9 109 -80 24 0 0 0 chr6 185387619 185387643 -3891911 + AT_rich Low_complexity Low_complexity 1 24 0 483 133 40 0 chr6 185387875 185387950 -3891604 + AluSg/x SINE Alu 216 293 -19 433 207 108 9 chr6 185387950 185388061 -3891493 - MER46C DNA MER2_type -206 132 11 1811 164 31 6 chr6 185388232 185388550 -3891004 - L1MA6 LINE L1 0 6300 5975 3192 145 10 41 chr6 185388553 185389134 -3890420 + L1MA7 LINE L1 4000 4562 -1584 795 88 9 9 chr6 185389134 185389248 -3890306 + L1PA7 LINE L1 5895 6008 -146 3523 154 1 38 chr6 185389348 185390003 -3889551 + L1MA7 LINE L1 5340 5970 -321 849 312 118 19 chr6 185390050 185390483 -3889071 - L3 LINE CR1 -37 1540 1065 186 335 20 53 chr6 185391353 185391505 -3888049 - L2 LINE L2 -543 2771 2625 211 125 42 21 chr6 185392510 185392558 -3886996 + A-rich Low_complexity Low_complexity 2 50 0 2008 161 0 0 chr6 185392928 185393233 -3886321 + AluSx SINE Alu 1 305 -7 180 125 0 0 chr6 185393648 185393680 -3885874 - L2 LINE L2 -349 2965 2934 390 191 0 45 chr6 185394533 185394643 -3884911 + MIR SINE MIR 58 162 -100 211 227 30 45 chr6 185395434 185395500 -3884054 - L2 LINE L2 -6 3266 3202 470 138 11 23 chr6 185395806 185395893 -3883661 - MER74B LTR ERVL -481 141 56 484 256 17 8 chr6 185396276 185396393 -3883161 + MER5B DNA MER1_type 3 120 -58 1567 161 4 8 chr6 185396596 185396863 -3882691 - L1MA4A LINE L1 -11 6292 6027 1842 323 77 24 chr6 185402194 185402740 -3876814 - ERVL LTR ERVL -962 4802 4286 198 0 0 0 chr6 185402740 185402762 -3876792 + (CAG)n Simple_repeat Simple_repeat 2 23 0 1842 323 77 24 chr6 185402762 185403202 -3876352 - ERVL LTR ERVL -1478 4286 3764 275 353 0 0 chr6 185403286 185403405 -3876149 - ERVL LTR ERVL -1701 3295 3177 367 289 33 33 chr6 185403740 185403900 -3875654 + MIR SINE MIR 19 182 -78 380 202 40 20 chr6 185404046 185404145 -3875409 - L1MDa LINE L1 -3045 4520 4420 3213 151 47 35 chr6 185404146 185404891 -3874663 - L1 LINE L1 -3375 4190 3425 1686 169 4 4 chr6 185404891 185405169 -3874385 - AluSx SINE Alu -16 296 19 3213 151 47 35 chr6 185405169 185405517 -3874037 - L1 LINE L1 -4140 3425 3083 1692 81 78 129 chr6 185405626 185405935 -3873619 + AluSg SINE Alu 1 293 -17 434 280 33 58 chr6 185406137 185406501 -3873053 + L1MEd LINE L1 762 1116 -5003 1313 174 4 0 chr6 185406732 185406968 -3872586 - L1PA6 LINE L1 -1 6153 5917 24 32 0 0 chr6 185407246 185407277 -3872277 + AT_rich Low_complexity Low_complexity 1 31 0 742 174 19 19 chr6 185407281 185407442 -3872112 + L1MA10 LINE L1 6172 6332 -2 184 30 61 0 chr6 185407632 185407665 -3871889 + A-rich Low_complexity Low_complexity 2 36 0 1756 173 20 0 chr6 185407829 185408135 -3871419 - AluSx SINE Alu 0 312 1 588 232 114 27 chr6 185408135 185408355 -3871199 + Charlie2 DNA MER1_type 73 311 -2471 2243 108 3 13 chr6 185408666 185408973 -3870581 + AluSx SINE Alu 1 304 -8 1412 82 0 0 chr6 185409924 185410094 -3869460 - AluSq SINE Alu -143 170 1 239 297 27 74 chr6 185410746 185410894 -3868660 - MIR SINE MIR -36 226 86 4350 168 13 17 chr6 185411706 185412497 -3867057 - L1 LINE L1 -984 5162 4374 1994 120 45 7 chr6 185412497 185412788 -3866766 - AluSc SINE Alu -3 306 5 4350 168 13 17 chr6 185412788 185412871 -3866683 - L1 LINE L1 -1772 4374 4292 2903 130 0 0 chr6 185412868 185413368 -3866186 + L1M2 LINE L1 5183 5682 -615 * 2302 95 7 0 chr6 185413485 185413779 -3865775 - AluSq SINE Alu -17 296 1 1655 247 29 18 chr6 185413784 185414334 -3865220 - L1MDa LINE L1 -3382 4183 3628 1407 104 76 0 chr6 185414335 185414546 -3865008 - AluSg/x SINE Alu -14 298 72 3267 187 78 6 chr6 185414548 185415359 -3864195 - L1MDa LINE L1 -3930 3635 2767 1078 47 0 0 chr6 185415574 185415702 -3863852 + AluY SINE Alu 179 306 -5 340 289 88 0 chr6 185416825 185416939 -3862615 + MIR SINE MIR 33 156 -106 1905 126 4 7 chr6 185417088 185417366 -3862188 - AluSx SINE Alu -9 303 27 2574 230 65 51 chr6 185417662 185418432 -3861122 - L1MEc LINE L1 -3107 3108 2345 1872 113 85 20 chr6 185418432 185418725 -3860829 - AluSx SINE Alu 0 312 1 2574 230 65 51 chr6 185418725 185419033 -3860521 - L1MEc LINE L1 -3870 2345 2043 2039 119 0 0 chr6 185419838 185420107 -3859447 + AluSx SINE Alu 13 281 -31 495 0 0 0 chr6 185420110 185420165 -3859389 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 255 299 47 9 chr6 185420729 185420836 -3858718 - MIR SINE MIR -35 227 117 1821 168 0 26 chr6 185422857 185423167 -3856387 - AluJo SINE Alu -10 302 1 401 182 78 0 chr6 185424090 185424135 -3855419 + AluS SINE Alu 3 43 -270 2768 74 8 0 chr6 185424135 185424487 -3855067 + THE1A LTR MaLR 1 355 0 401 182 78 0 chr6 185424487 185424518 -3855036 + AluS SINE Alu 43 85 -228 7991 159 25 11 chr6 185424618 185426263 -3853291 - L1PBa LINE L1 -3761 3101 1392 591 215 12 92 chr6 185426346 185426429 -3853125 - Charlie2 DNA MER1_type -300 2562 2474 2103 133 3 0 chr6 185426429 185426722 -3852832 - AluSp SINE Alu -19 294 1 591 215 12 92 chr6 185426722 185426759 -3852795 - Charlie2 DNA MER1_type -388 2474 2436 263 27 0 27 chr6 185426759 185426796 -3852758 + (CA)n Simple_repeat Simple_repeat 2 37 0 591 215 12 92 chr6 185426796 185427009 -3852545 - Charlie2 DNA MER1_type -426 2436 2255 246 320 133 8 chr6 185427084 185427212 -3852342 - Charlie2 DNA MER1_type -2469 313 170 314 295 246 18 chr6 185427549 185427580 -3851974 + L2 LINE L2 1743 1766 -1548 1157 187 81 68 chr6 185427580 185427949 -3851605 - MLT1A2 LTR MaLR 0 374 1 314 295 246 18 chr6 185427949 185428422 -3851132 + L2 LINE L2 1766 2362 -952 206 291 63 102 chr6 185428731 185428969 -3850585 + L2 LINE L2 2776 3002 -311 425 233 19 29 chr6 185429075 185429089 -3850465 + L2 LINE L2 3170 3183 -89 2666 24 3 0 chr6 185429089 185429386 -3850168 - AluY SINE Alu -13 298 1 425 233 19 29 chr6 185429386 185429474 -3850080 + L2 LINE L2 3183 3271 -1 23 0 0 0 chr6 185429474 185429497 -3850057 + AT_rich Low_complexity Low_complexity 1 23 0 420 255 25 50 chr6 185429879 185430040 -3849514 - MLT1L LTR MaLR -38 577 421 630 319 88 28 chr6 185430085 185430515 -3849039 - L2 LINE L2 -719 2595 2140 496 56 90 34 chr6 185430534 185430623 -3848931 - L1PA13 LINE L1 -3 6160 6067 516 96 0 12 chr6 185430742 185430825 -3848729 - L1MA5A LINE L1 -4 6293 6212 497 204 75 20 chr6 185430836 185430983 -3848571 + L1MA5A LINE L1 6085 6239 -58 275 241 43 93 chr6 185432521 185432683 -3846871 - MIR SINE MIR -89 173 20 3938 162 0 5 chr6 185435588 185436200 -3843354 - MER52A LTR ERV1 0 1755 1147 1122 205 139 86 chr6 185436536 185436966 -3842588 + MLT1C LTR MaLR 6 458 -9 312 259 122 38 chr6 185437505 185437768 -3841786 - MLT1H1 LTR MaLR -5 537 220 25 31 0 0 chr6 185438334 185438366 -3841188 + AT_rich Low_complexity Low_complexity 1 32 0 791 215 14 47 chr6 185438932 185439144 -3840410 + MER52A LTR ERV1 6 350 -928 * 951 207 0 0 chr6 185439138 185439307 -3840247 + MER52A LTR ERV1 525 693 -1062 1309 168 4 21 chr6 185439407 185439645 -3839909 + AluJb SINE Alu 74 307 -5 12803 118 17 12 chr6 185440813 185440933 -3838621 - Charlie3 DNA MER1_type 0 2706 2588 1954 149 0 3 chr6 185440933 185441228 -3838326 - AluSx SINE Alu -1 311 18 12803 118 17 12 chr6 185441228 185443123 -3836431 - Charlie3 DNA MER1_type -118 2588 682 261 0 0 0 chr6 185443402 185443431 -3836123 + (CAA)n Simple_repeat Simple_repeat 2 30 0 536 151 41 10 chr6 185443577 185443875 -3835679 + (CA)n Simple_repeat Simple_repeat 1 307 0 255 239 98 11 chr6 185444370 185444462 -3835092 + MLT1J2 LTR MaLR 84 183 -267 423 210 10 0 chr6 185445051 185445151 -3834403 + MER5A DNA MER1_type 9 109 -80 26 0 0 0 chr6 185445331 185445357 -3834197 + AT_rich Low_complexity Low_complexity 1 26 0 195 229 0 51 chr6 185446868 185446966 -3832588 + (TATATG)n Simple_repeat Simple_repeat 5 94 -59 1228 228 77 15 chr6 185446966 185447290 -3832264 + MER2 DNA MER2_type 1 344 0 195 229 0 51 chr6 185447290 185447348 -3832206 + (TATATG)n Simple_repeat Simple_repeat 94 153 0 2234 217 35 9 chr6 185447451 185448031 -3831523 + L1ME LINE L1 4390 4984 -1162 1954 274 34 34 chr6 185448031 185448874 -3830680 - L1MEc LINE L1 -3352 3589 2790 335 298 25 13 chr6 185449780 185449938 -3829616 - L1MEc LINE L1 -6194 229 70 4065 149 32 10 chr6 185451225 185451921 -3827633 + MER50 LTR ERV1 1 711 -23 292 234 8 81 chr6 185451922 185452046 -3827508 + L1M4 LINE L1 2407 2521 -3625 10512 93 10 3 chr6 185452147 185453516 -3826038 + Charlie3 DNA MER1_type 2 1380 -1330 8719 166 13 11 chr6 185453618 185455220 -3824334 - L1P LINE L1 -1424 4722 3117 441 269 12 64 chr6 185455231 185455402 -3824152 + L1ME LINE L1 5583 5744 -422 2383 81 0 0 chr6 185455892 185456201 -3823353 - AluSg1 SINE Alu 0 309 1 274 307 18 9 chr6 185457137 185457251 -3822303 + L1ME LINE L1 5637 5751 -370 1773 137 42 36 chr6 185457567 185457902 -3821652 - MER1B DNA MER1_type 0 337 1 1539 164 119 4 chr6 185458573 185458842 -3820712 - AluSc SINE Alu -9 300 1 2275 138 65 20 chr6 185459365 185459763 -3819791 - MSTA LTR MaLR -12 416 1 6981 179 54 36 chr6 185459763 185461296 -3818258 - MSTB-int LTR MaLR 0 1651 3 2305 153 64 15 chr6 185461298 185461704 -3817850 - MSTB LTR MaLR 0 426 1 236 302 0 0 chr6 185462200 185462263 -3817291 + L3 LINE CR1 980 1042 -535 266 322 61 11 chr6 185464027 185464207 -3815347 + MIR SINE MIR 9 197 -65 2305 93 7 3 chr6 185464208 185464510 -3815044 + AluSp SINE Alu 2 304 -9 1716 173 0 22 chr6 185464879 185465191 -3814363 - AluJo SINE Alu -7 305 1 1939 153 3 3 chr6 185465269 185465576 -3813978 - AluJb SINE Alu -5 307 1 1900 173 133 60 chr6 185465761 185466241 -3813313 - MLT2B1 LTR ERVL 0 520 6 1449 190 46 14 chr6 185466496 185466780 -3812774 + AluJo SINE Alu 1 293 -19 272 143 0 0 chr6 185467300 185467342 -3812212 - MER110 LTR ERV1 -29 462 421 316 250 74 48 chr6 185467461 185467631 -3811923 + L1ME LINE L1 5518 5692 -478 573 178 43 87 chr6 185467660 185467891 -3811663 + L1MC5 LINE L1 7609 7829 -132 2229 102 20 13 chr6 185469568 185469871 -3809683 - AluSg SINE Alu -5 305 1 270 301 68 0 chr6 185469975 185470108 -3809446 + L2 LINE L2 2174 2315 -999 501 289 97 13 chr6 185470113 185470341 -3809213 + L2 LINE L2 2478 2724 -590 1624 178 49 0 chr6 185470780 185471066 -3808488 + AluJo SINE Alu 3 302 -10 5275 238 20 61 chr6 185471473 185472891 -3806663 - MSTD-int LTR MaLR -375 1360 1 1058 174 115 41 chr6 185472891 185473177 -3806377 - MSTD LTR MaLR 0 396 60 375 261 0 0 chr6 185473187 185473275 -3806279 - MSTD LTR MaLR -340 88 1 585 323 39 49 chr6 185473404 185473492 -3806062 - L1M4 LINE L1 -1005 5141 5054 2413 135 64 15 chr6 185473492 185473900 -3805654 + MSTA LTR MaLR 1 428 0 585 323 39 49 chr6 185473900 185474483 -3805071 - L1M4 LINE L1 -1092 5054 4477 707 299 116 29 chr6 185476047 185476735 -3802819 - L1M4 LINE L1 -1763 4383 3609 1771 171 17 11 chr6 185476735 185477022 -3802532 + AluJo SINE Alu 4 292 -20 707 299 116 29 chr6 185477022 185477162 -3802392 - L1M4 LINE L1 -2537 3609 3483 662 241 80 0 chr6 185478225 185478387 -3801167 + MER66A LTR ERV1 304 478 0 288 77 0 0 chr6 185480727 185480766 -3798788 + (CA)n Simple_repeat Simple_repeat 1 39 0 2570 49 0 3 chr6 185481048 185481354 -3798200 - AluY SINE Alu -6 305 1 241 220 68 110 chr6 185481684 185481802 -3797752 + MLT1K LTR MaLR 367 479 -109 233 327 19 19 chr6 185482055 185482159 -3797395 + MER94 DNA DNA 24 127 -7 1343 236 6 36 chr6 185482880 185483215 -3796339 - L1MC4 LINE L1 -172 7870 7546 21 36 0 0 chr6 185483363 185483391 -3796163 + AT_rich Low_complexity Low_complexity 1 28 0 2056 130 13 3 chr6 185487471 185487778 -3791776 + AluSq SINE Alu 1 310 -3 231 293 93 67 chr6 185488022 185488172 -3791382 + MIR3 SINE MIR 1 154 -54 421 235 29 10 chr6 185489045 185489147 -3790407 - MIR SINE MIR -61 147 44 1510 247 55 62 chr6 185490039 185490098 -3789456 + L1ME3A LINE L1 4978 5036 -1134 14902 71 4 2 chr6 185490098 185490351 -3789203 - L1PA6 LINE L1 0 6154 5903 2367 101 3 0 chr6 185490351 185490658 -3788896 + AluSx SINE Alu 1 308 -4 14902 71 4 2 chr6 185490658 185493140 -3786414 - L1PA6 LINE L1 -251 5903 3435 2011 111 4 0 chr6 185493145 185493416 -3786138 - AluSx SINE Alu -7 305 34 1510 247 55 62 chr6 185493416 185494489 -3785065 + L1ME3A LINE L1 5040 6111 -59 1581 158 0 0 chr6 185494544 185494816 -3784738 + L1P LINE L1 5014 5285 -861 231 192 144 64 chr6 185495247 185495376 -3784178 + MIR SINE MIR 47 176 -86 232 25 75 0 chr6 185495550 185495590 -3783964 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7262 38 1 2 chr6 185495591 185496455 -3783099 - L1PA3 LINE L1 0 6155 5293 549 208 82 49 chr6 185500930 185500990 -3778564 - MER5A DNA MER1_type 0 189 132 2515 45 0 3 chr6 185500990 185501280 -3778274 + AluY SINE Alu 1 289 -22 549 208 82 49 chr6 185501280 185501402 -3778152 - MER5A DNA MER1_type -57 132 1 234 351 30 15 chr6 185501409 185501543 -3778011 - MER5B DNA MER1_type 0 178 43 2052 134 3 10 chr6 185502734 185503032 -3776522 - AluSx SINE Alu -16 296 1 231 186 0 0 chr6 185508055 185508098 -3771456 + (CCCCG)n Simple_repeat Simple_repeat 4 46 0 206 227 13 0 chr6 185511988 185512063 -3767491 + (TA)n Simple_repeat Simple_repeat 1 76 0 34 55 0 0 chr6 185512063 185512118 -3767436 + AT_rich Low_complexity Low_complexity 1 55 0 2556 250 52 34 chr6 185512120 185513507 -3766047 - L1ME1 LINE L1 -5 6659 5247 826 200 71 0 chr6 185513507 185513662 -3765892 + FAM SINE Alu 1 166 -9 2556 250 52 34 chr6 185513662 185513957 -3765597 - L1ME1 LINE L1 -1417 5247 4959 738 243 41 18 chr6 185514056 185514274 -3765280 - MLT1J LTR MaLR -36 475 253 288 300 47 79 chr6 185514409 185514839 -3764715 + HAL1b LINE L1 122 537 -811 188 316 103 17 chr6 185517461 185517578 -3761976 + MIR SINE MIR 132 258 -4 428 250 71 12 chr6 185517765 185517933 -3761621 - L1ME1 LINE L1 -4595 2230 2053 1965 111 0 0 chr6 185517955 185518207 -3761347 - AluSx SINE Alu -29 283 32 966 195 43 19 chr6 185518207 185518464 -3761090 - L1M4 LINE L1 -807 5339 5077 1262 287 71 39 chr6 185518488 185519525 -3760029 - L1ME1 LINE L1 -4741 1905 914 431 305 80 11 chr6 185519519 185519706 -3759848 - L1ME1 LINE L1 -6011 531 332 * 346 171 0 26 chr6 185519700 185519776 -3759778 - L1MC/D LINE L1 -599 5745 5672 * 247 308 56 9 chr6 185519854 185519961 -3759593 + L1ME LINE L1 208 319 -5886 4103 210 48 9 chr6 185519967 185521256 -3758298 + L1MB7 LINE L1 4843 6179 -5 429 316 84 14 chr6 185521251 185521466 -3758088 + L1MC/D LINE L1 5444 5673 -2135 * 474 208 175 0 chr6 185521575 185521729 -3757825 + L1MD3 LINE L1 7801 7981 -14 182 297 176 37 chr6 185522934 185523389 -3756165 + L2 LINE L2 1977 2494 -820 272 196 0 0 chr6 185524402 185524448 -3755106 - MER110 LTR ERV1 -445 46 1 1600 177 70 104 chr6 185525127 185525537 -3754017 + L1ME LINE L1 1817 2240 -4156 688 168 23 15 chr6 185525537 185525668 -3753886 + FLAM_C SINE Alu 1 132 -1 1600 177 70 104 chr6 185525668 185525685 -3753869 + L1ME LINE L1 2240 2256 -4140 2335 78 0 0 chr6 185525685 185526015 -3753539 + AluY SINE Alu 1 330 0 1600 177 70 104 chr6 185526015 185526160 -3753394 + L1ME LINE L1 2256 2371 -4025 1450 222 13 7 chr6 185526161 185526463 -3753091 + AluJb SINE Alu 1 304 -8 2108 130 0 0 chr6 185526475 185526759 -3752795 + AluSx SINE Alu 5 288 -24 392 258 0 40 chr6 185526805 185526831 -3752723 + L1ME LINE L1 2304 2329 -3961 246 32 0 0 chr6 185526831 185526862 -3752692 + (GA)n Simple_repeat Simple_repeat 2 32 0 392 258 0 40 chr6 185526862 185527006 -3752548 + L1ME LINE L1 2329 2506 -3784 749 244 10 31 chr6 185527323 185527516 -3752038 + MLT1H LTR MaLR 23 211 -338 294 130 0 19 chr6 185527678 185527732 -3751822 + MLT1G LTR MaLR 533 585 -5 276 218 73 27 chr6 185528301 185528411 -3751143 + ERVL LTR ERVL 3385 3499 -2265 2622 55 0 0 chr6 185529285 185529596 -3749958 + AluY SINE Alu 1 311 0 2394 100 0 3 chr6 185530057 185530367 -3749187 + AluSc SINE Alu 1 309 0 2030 160 73 28 chr6 185530854 185531388 -3748166 - MLT2A2 LTR ERVL 0 554 1 1679 87 18 13 chr6 185532785 185533014 -3746540 + MER30 DNA MER1_type 1 230 0 324 130 0 0 chr6 185533114 185533160 -3746394 - THE1B LTR MaLR -1 363 318 1720 170 22 0 chr6 185533261 185533537 -3746017 - AluSx SINE Alu -30 282 1 694 196 118 32 chr6 185533537 185533757 -3745797 + Charlie2 DNA MER1_type 73 311 -2471 216 250 33 0 chr6 185533938 185533998 -3745556 - MIR SINE MIR -12 250 189 310 311 76 69 chr6 185534519 185534982 -3744572 - L2 LINE L2 -22 3291 2826 482 269 28 48 chr6 185535206 185535381 -3744173 - Charlie2 DNA MER1_type -13 2849 2679 2106 123 3 10 chr6 185535381 185535681 -3743873 + AluSx SINE Alu 1 298 -14 482 269 28 48 chr6 185535681 185535754 -3743800 - Charlie2 DNA MER1_type -183 2679 2606 23 0 0 0 chr6 185535773 185535796 -3743758 + AT_rich Low_complexity Low_complexity 1 23 0 3497 111 14 4 chr6 185535796 185536312 -3743242 - L1PB1 LINE L1 -1 6150 5630 10458 197 25 10 chr6 185536312 185537037 -3742517 - L1 LINE L1 -1864 4282 3569 2022 136 23 0 chr6 185537037 185537338 -3742216 - AluSx SINE Alu -4 308 1 10458 197 25 10 chr6 185537338 185539136 -3740418 - L1 LINE L1 -2577 3569 1743 471 235 112 31 chr6 185539253 185539449 -3740105 - L1ME2 LINE L1 -78 6086 5875 533 207 144 16 chr6 185539469 185539657 -3739897 - L1MC4a LINE L1 0 7808 7597 1774 234 73 40 chr6 185539660 185540424 -3739130 - L1ME2 LINE L1 -335 5829 5040 415 219 6 44 chr6 185540463 185540646 -3738908 + CT-rich Low_complexity Low_complexity 4 179 0 674 185 6 22 chr6 185540805 185540983 -3738571 + CT-rich Low_complexity Low_complexity 1 175 0 1258 168 14 0 chr6 185540983 185541197 -3738357 - AluJo SINE Alu -9 303 87 4493 270 80 23 chr6 185541421 185543362 -3736192 - L1ME2 LINE L1 -1283 4863 2812 1809 208 18 24 chr6 185543355 185543806 -3735748 + L1M4 LINE L1 3985 4432 -1714 * 422 311 34 0 chr6 185743900 185744048 -3535506 - MIR SINE MIR -57 205 53 190 259 108 108 chr6 185745294 185745433 -3534121 + MIR SINE MIR 56 194 -68 1578 277 103 37 chr6 185745926 185747207 -3532347 - L1MEc LINE L1 -3012 3203 1863 339 311 41 51 chr6 185747214 185747410 -3532144 - L1MEc LINE L1 -4593 1803 1610 1599 249 47 86 chr6 185747487 185748518 -3531036 - L1ME2 LINE L1 -134 6030 5029 1162 263 60 2 chr6 185748510 185748929 -3530625 + L1MC3 LINE L1 2617 3059 -3087 * 1302 252 74 32 chr6 185749005 185749466 -3530088 + L1MA9 LINE L1 5795 6274 -38 * 2335 242 33 55 chr6 185749461 185750374 -3529180 + L1MC3 LINE L1 4375 5267 -879 1810 256 91 42 chr6 185750405 185751152 -3528402 + L1MC3 LINE L1 5456 6239 -1546 220 195 0 0 chr6 185753298 185753339 -3526215 + (TG)n Simple_repeat Simple_repeat 2 42 0 197 304 70 52 chr6 185753340 185753423 -3526131 - MIR SINE MIR -95 167 80 1847 167 0 25 chr6 185753423 185753741 -3525813 - AluSq SINE Alu -3 310 1 197 304 70 52 chr6 185753741 185753772 -3525782 - MIR SINE MIR -182 80 51 1023 193 119 26 chr6 185753952 185754222 -3525332 - L1MB8 LINE L1 -2 6176 5882 266 268 37 12 chr6 185754936 185755018 -3524536 + MIR3 SINE MIR 85 168 -40 1588 243 57 20 chr6 185755716 185756329 -3523225 - L1MB8 LINE L1 -758 5388 4781 970 78 78 0 chr6 185756651 185756780 -3522774 + MER85 DNA T2_type 1 139 0 270 263 26 13 chr6 185759830 185759906 -3519648 - MIR3 SINE MIR -33 175 99 265 208 42 0 chr6 185760221 185760293 -3519261 + MER112 DNA MER1_type 92 166 -94 242 244 16 94 chr6 185760310 185760437 -3519117 + MER112 DNA MER1_type 138 254 -6 570 307 102 15 chr6 185760818 185761403 -3518151 - L1MDa LINE L1 -4834 1796 1060 209 237 0 72 chr6 185763706 185763803 -3515751 + T-rich Low_complexity Low_complexity 6 95 0 396 59 0 0 chr6 185764797 185764848 -3514706 + (CA)n Simple_repeat Simple_repeat 2 52 0 1289 250 82 36 chr6 185764849 185765205 -3514349 - MLT1A2 LTR MaLR -2 372 1 3011 241 75 80 chr6 185765208 185766577 -3512977 - MLT1A2-int LTR MaLR -5 1366 5 1514 178 20 99 chr6 185766581 185766974 -3512580 - MLT1A2 LTR MaLR 0 374 13 292 271 12 0 chr6 185767003 185767173 -3512381 + (CA)n Simple_repeat Simple_repeat 1 172 0 216 67 0 0 chr6 185767191 185767221 -3512333 + (CA)n Simple_repeat Simple_repeat 1 30 0 216 0 0 0 chr6 185767284 185767308 -3512246 + (TATATG)n Simple_repeat Simple_repeat 1 24 0 267 31 0 0 chr6 185768409 185768441 -3511113 + (CA)n Simple_repeat Simple_repeat 1 32 0 182 219 73 24 chr6 185768628 185768710 -3510844 + MIR SINE MIR 129 214 -48 9464 29 46 0 chr6 185769146 185770313 -3509241 - L1PA3 LINE L1 -2932 3214 1994 19422 27 2 0 chr6 185770313 185773246 -3506308 + L1PA3 LINE L1 3218 6151 -4 1917 279 47 41 chr6 185773274 185774107 -3505447 + L1MCb LINE L1 43 880 -5165 754 276 4 9 chr6 185774099 185774327 -3505227 + L1MCb LINE L1 2590 2816 -3748 * 2629 279 44 19 chr6 185774333 185776631 -3502923 + L1 LINE L1 302 2374 -3660 1579 234 21 60 chr6 185776634 185777152 -3502402 + L1 LINE L1 4563 5060 -974 3724 188 29 7 chr6 185777159 185777983 -3501571 + L1M3a LINE L1 2577 3418 -2616 798 197 75 0 chr6 185777983 185778130 -3501424 + AluJb SINE Alu 145 302 -10 2381 191 73 2 chr6 185778145 185778498 -3501056 + L1MA9 LINE L1 5785 6184 -128 180 0 0 0 chr6 185778498 185778518 -3501036 + (CA)n Simple_repeat Simple_repeat 1 20 0 2381 191 73 2 chr6 185778518 185778657 -3500897 + L1MA9 LINE L1 6184 6312 0 280 275 154 20 chr6 185778655 185778804 -3500750 + L1M4 LINE L1 2387 2555 -3591 * 2118 303 19 9 chr6 185778833 185779738 -3499816 + L1M4 LINE L1 2802 3715 -2431 3281 214 36 13 chr6 185779742 185780536 -3499018 + L1MC3 LINE L1 6863 7675 -110 256 284 168 13 chr6 185780821 185780976 -3498578 - MIR SINE MIR -16 246 68 1627 114 0 13 chr6 185780980 185781207 -3498347 + AluSg SINE Alu 59 282 -28 222 195 0 0 chr6 185781245 185781286 -3498268 - MIR SINE MIR -193 69 29 204 288 62 0 chr6 185781437 185781517 -3498037 + (CATG)n Simple_repeat Simple_repeat 2 86 0 181 289 178 20 chr6 185781787 185781939 -3497615 + MIR SINE MIR 21 196 -66 271 289 72 59 chr6 185783166 185783318 -3496236 - MER57B LTR ERV1 -245 189 36 803 102 42 0 chr6 185783991 185784109 -3495445 + AluSc SINE Alu 187 309 0 322 284 151 76 chr6 185785058 185786063 -3493491 - L1M2 LINE L1 -5609 1240 471 294 302 24 30 chr6 185786333 185786502 -3493052 + C-rich Low_complexity Low_complexity 2 169 0 218 267 40 40 chr6 185787243 185787318 -3492236 + L2 LINE L2 3239 3313 0 2049 148 3 3 chr6 185787509 185787820 -3491734 - AluSx SINE Alu -1 311 1 2193 127 0 0 chr6 185787902 185788201 -3491353 - AluSx SINE Alu -13 299 1 1285 196 106 61 chr6 185788993 185789431 -3490123 - MER66A LTR ERV1 0 478 97 276 209 11 113 chr6 185789544 185789721 -3489833 + (CACCT)n Simple_repeat Simple_repeat 2 160 0 1387 143 46 0 chr6 185790218 185790435 -3489119 + MER30 DNA MER1_type 4 230 0 21 0 0 0 chr6 185791093 185791114 -3488440 + AT_rich Low_complexity Low_complexity 1 21 0 2258 110 0 22 chr6 185791374 185791692 -3487862 + AluSx SINE Alu 1 311 -1 1788 173 0 10 chr6 185791896 185792209 -3487345 - AluJo SINE Alu -2 310 1 426 272 29 0 chr6 185792583 185792686 -3486868 + L2 LINE L2 3203 3308 -5 3439 100 7 0 chr6 185792959 185793409 -3486145 - MLT2A2 LTR ERVL 0 453 1 1797 151 65 57 chr6 185795646 185796018 -3483536 - Tigger2 DNA MER2_type 0 2718 2344 977 246 63 7 chr6 185796025 185796326 -3483228 + L1MC3 LINE L1 7361 7678 -107 2131 127 7 0 chr6 185796402 185796702 -3482852 + AluSx SINE Alu 1 302 -10 247 173 58 0 chr6 185796711 185796763 -3482791 + L1MC3 LINE L1 7701 7755 -30 1013 294 89 13 chr6 185796800 185797418 -3482136 + L1MDa LINE L1 1725 2440 -4281 490 133 98 133 chr6 185797418 185797485 -3482069 + MER4B LTR ERV1 1 69 -541 2147 118 0 0 chr6 185797485 185797772 -3481782 - AluSq SINE Alu -22 291 5 490 133 98 133 chr6 185797772 185797847 -3481707 + MER4B LTR ERV1 69 138 -472 1230 169 42 0 chr6 185797869 185798082 -3481472 - MER61E LTR ERV1 -6 563 342 373 252 3 50 chr6 185798122 185798263 -3481291 - MER61E LTR ERV1 -380 189 75 399 228 70 84 chr6 185798266 185798515 -3481039 - LTR25 LTR ERV1 -397 172 1 2527 124 59 3 chr6 185798529 185798917 -3480637 + MER4E LTR ERV1 360 769 -10 2172 181 80 14 chr6 185800207 185800776 -3478778 - MER4E LTR ERV1 0 779 1 1603 139 28 66 chr6 185802093 185802452 -3477102 - MER4A LTR ERV1 0 664 261 601 143 0 10 chr6 185802452 185802550 -3477004 - MER4A LTR ERV1 -566 98 2 2005 203 132 40 chr6 185802765 185803341 -3476213 - MER51A LTR ERV1 -5 629 1 2165 262 88 25 chr6 185803384 185804336 -3475218 - L1ME1 LINE L1 -149 6297 5212 1953 143 10 3 chr6 185804336 185804630 -3474924 - AluSx SINE Alu -16 296 1 2165 262 88 25 chr6 185804630 185805289 -3474265 - L1ME1 LINE L1 -1234 5212 4596 1145 146 6 0 chr6 185805291 185805469 -3474085 - AluSg/x SINE Alu -14 298 120 666 271 0 0 chr6 185805480 185805646 -3473908 - L1ME1 LINE L1 -1851 4575 4410 1353 257 65 32 chr6 185805676 185806418 -3473136 - L1ME1 LINE L1 -2665 3761 2996 22 0 0 0 chr6 185806438 185806460 -3473094 + AT_rich Low_complexity Low_complexity 1 22 0 16909 214 20 15 chr6 185806460 185808614 -3470940 - L1PA15 LINE L1 0 7603 5460 2869 91 3 0 chr6 185808614 185808988 -3470566 + THE1C LTR MaLR 1 375 0 16909 214 20 15 chr6 185808988 185812004 -3467550 - L1PA15 LINE L1 -2143 5460 2411 587 296 55 35 chr6 185812975 185813323 -3466231 - L1PA15 LINE L1 -7226 355 1 360 309 0 0 chr6 185813326 185813449 -3466105 - L1ME1 LINE L1 -3422 3004 2882 1845 176 78 19 chr6 185813898 185814272 -3465282 + MSTD LTR MaLR 1 396 0 195 42 0 0 chr6 185817718 185817742 -3461812 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 232 203 68 68 chr6 185817973 185818047 -3461507 - MER116 DNA Mariner -6 74 1 2215 103 0 0 chr6 185821338 185821650 -3457904 - AluSx SINE Alu 0 312 1 728 255 58 25 chr6 185822272 185822664 -3456890 + L1MC4 LINE L1 7019 7420 -622 414 295 64 13 chr6 185823164 185823398 -3456156 - L1ME3 LINE L1 -68 6094 5849 350 282 146 45 chr6 185823550 185823837 -3455717 - L1ME1 LINE L1 -4804 1622 1307 6356 30 0 0 chr6 185825831 185826565 -3452989 - L1P LINE L1 -1511 4635 3902 7871 18 0 6 chr6 185826565 185827540 -3452014 + L1PA2 LINE L1 5179 6148 -7 234 0 0 0 chr6 185827569 185827595 -3451959 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 229 179 18 36 chr6 185827863 185827919 -3451635 + MLT1H LTR MaLR 489 543 -6 2173 169 41 12 chr6 185828395 185828809 -3450745 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr6 185831038 185831060 -3448494 + AT_rich Low_complexity Low_complexity 1 22 0 2510 69 0 3 chr6 185831242 185831547 -3448007 + AluY SINE Alu 1 304 -7 7752 154 18 11 chr6 185831547 185833835 -3445719 + L1PB4 LINE L1 3852 6155 -1 312 326 47 23 chr6 185834017 185834146 -3445408 - MIR SINE MIR -26 236 105 196 154 39 0 chr6 185834731 185834783 -3444771 + GA-rich Low_complexity Low_complexity 1 54 0 383 253 85 78 chr6 185835537 185835818 -3443736 - MLT1B LTR MaLR -157 233 24 282 308 19 0 chr6 185838074 185838181 -3441373 + MIR SINE MIR 113 221 -41 2365 89 0 10 chr6 185839385 185839687 -3439867 - AluSx SINE Alu -13 299 1 485 214 69 122 chr6 185840549 185840811 -3438743 + MLT2C1 LTR ERVL 96 343 -54 771 307 34 6 chr6 185841172 185841524 -3438030 + L1MA9 LINE L1 5913 6274 -38 1447 130 134 12 chr6 185841925 185842171 -3437383 + AluSg SINE Alu 2 277 -33 282 56 0 0 chr6 185842171 185842207 -3437347 + (CA)n Simple_repeat Simple_repeat 1 36 0 180 0 0 0 chr6 185842309 185842329 -3437225 + (TA)n Simple_repeat Simple_repeat 2 21 0 23 78 0 0 chr6 185843605 185843656 -3435898 + AT_rich Low_complexity Low_complexity 1 51 0 2421 62 0 59 chr6 185843921 185844245 -3435309 - AluY SINE Alu -6 305 1 28 0 0 0 chr6 185844890 185844918 -3434636 + AT_rich Low_complexity Low_complexity 1 28 0 2164 173 37 3 chr6 185845253 185845266 -3434288 - L1MC/D LINE L1 -721 6989 6978 2268 186 2 44 chr6 185845266 185845740 -3433814 - L1MA9 LINE L1 -9 6303 5850 2164 173 37 3 chr6 185845740 185846367 -3433187 - L1MC/D LINE L1 -732 6978 6360 * 3098 247 59 47 chr6 185846353 185847021 -3432533 - L1MC/D LINE L1 -3054 4511 3853 13665 161 49 5 chr6 185847021 185849335 -3430219 - Tigger1 DNA MER2_type 0 2418 3 3098 247 59 47 chr6 185849335 185850092 -3429462 - L1MC/D LINE L1 -3712 3853 3107 287 83 0 0 chr6 185850092 185850128 -3429426 - U2 snRNA snRNA -152 36 1 3098 247 59 47 chr6 185850128 185850889 -3428665 - L1MC/D LINE L1 -4458 3107 2258 5049 150 55 2 chr6 185850898 185851883 -3427671 + L1PA16 LINE L1 5128 6160 -6 712 311 20 61 chr6 185851880 185852478 -3427076 - L1M3c LINE L1 -4887 2211 1608 * 1238 221 51 8 chr6 185853598 185853969 -3425585 - L1 LINE L1 -1388 6177 5791 2367 269 66 80 chr6 185854005 185854290 -3425264 - L1 LINE L1 -3890 3675 3387 2203 132 3 0 chr6 185854290 185854600 -3424954 - AluSx SINE Alu -1 311 1 2367 269 66 80 chr6 185854600 185855412 -3424142 - L1 LINE L1 -4178 3387 2789 2306 44 0 44 chr6 185855412 185855766 -3423788 - AluY SINE Alu 0 341 1 2367 269 66 80 chr6 185855766 185856369 -3423185 - L1 LINE L1 -4776 2789 2179 534 332 67 5 chr6 185857359 185857582 -3421972 - L1 LINE L1 -5750 1746 1510 365 54 18 0 chr6 185857582 185857638 -3421916 + (TC)n Simple_repeat Simple_repeat 1 57 0 227 179 104 0 chr6 185857706 185857773 -3421781 - L1 LINE L1 -7089 477 404 257 396 7 7 chr6 185857967 185858106 -3421448 + MIR3 SINE MIR 70 208 0 840 99 21 7 chr6 185859893 185860035 -3419519 + (GAAA)n Simple_repeat Simple_repeat 3 146 0 350 147 93 0 chr6 185863847 185863922 -3415632 - L1MA9 LINE L1 -234 6078 5997 387 259 0 116 chr6 185863942 185863986 -3415568 + L1MA9 LINE L1 6108 6156 -156 3507 77 16 5 chr6 185863986 185864425 -3415129 + MLT2A1 LTR ERVL 1 444 0 387 259 0 116 chr6 185864425 185864569 -3414985 + L1MA9 LINE L1 6156 6274 -38 598 350 28 26 chr6 185865615 185865972 -3413582 - L1ME3A LINE L1 -117 6053 5693 1979 141 52 33 chr6 185865972 185866340 -3413214 + THE1C LTR MaLR 1 375 0 598 350 28 26 chr6 185866340 185866373 -3413181 - L1ME3A LINE L1 -477 5693 5662 270 321 28 9 chr6 185866973 185867079 -3412475 + LTR16A1 LTR ERVL 207 314 -143 267 281 69 62 chr6 185867880 185868040 -3411514 + MIR SINE MIR 10 170 -92 2096 107 0 17 chr6 185868159 185868472 -3411082 - AluSx SINE Alu 0 308 1 1193 303 26 21 chr6 185873309 185873986 -3405568 + L1MEc LINE L1 2092 2732 -3483 * 1344 229 33 31 chr6 185873954 185874343 -3405211 + L1MD3 LINE L1 7666 8055 -9 278 289 0 0 chr6 185874356 185874432 -3405122 + (TA)n Simple_repeat Simple_repeat 2 77 0 338 319 60 16 chr6 185874812 185874994 -3404560 + L1ME LINE L1 5539 5728 -393 1837 224 67 2 chr6 185875017 185875449 -3404105 + MLT1C LTR MaLR 8 467 0 252 273 0 0 chr6 185875953 185876030 -3403524 + L1ME LINE L1 5813 5889 -232 270 309 31 21 chr6 185876418 185876515 -3403039 + Charlie8 DNA MER1_type 92 189 -2228 227 294 11 11 chr6 185877089 185877181 -3402373 - MLT1I LTR MaLR -312 97 6 4752 69 9 0 chr6 185878394 185878976 -3400578 + LTR14C LTR ERVK 1 587 0 444 316 117 46 chr6 185879057 185879424 -3400130 - MLT1I LTR MaLR 0 409 17 4286 98 5 0 chr6 185880326 185880877 -3398677 + MER41A LTR ERV1 1 554 0 1839 136 7 55 chr6 185880928 185881237 -3398317 - AluSx SINE Alu -18 294 1 2298 101 0 3 chr6 185881329 185881626 -3397928 - AluSx SINE Alu -16 296 1 372 332 76 27 chr6 185883132 185883460 -3396094 - L3 LINE CR1 -210 1367 1024 2049 126 75 28 chr6 185883808 185884166 -3395388 + THE1C LTR MaLR 1 375 0 11092 105 35 31 chr6 185884166 185885740 -3393814 + THE1C-int LTR MaLR 1 1580 0 1787 120 56 107 chr6 185885742 185886135 -3393419 + THE1C LTR MaLR 3 375 0 2442 144 49 7 chr6 185889728 185889930 -3389624 - MSTA LTR MaLR 0 428 236 186 43 0 0 chr6 185889930 185889953 -3389601 + (CAAG)n Simple_repeat Simple_repeat 2 24 0 2442 144 49 7 chr6 185889953 185890159 -3389395 - MSTA LTR MaLR -192 236 3 1609 286 98 16 chr6 185890208 185891238 -3388316 - L1ME1 LINE L1 -52 6114 5004 1920 180 45 30 chr6 185892769 185893313 -3386241 + MLT2A2 LTR ERVL 1 554 0 20080 105 8 16 chr6 185893313 185896122 -3383432 + HERVL-A2 LTR ERVL 1 2787 -2867 1774 71 0 0 chr6 185896118 185896342 -3383212 + HERVL-A2 LTR ERVL 3828 4051 -1603 * 2115 151 0 0 chr6 185896456 185896755 -3382799 + AluSx SINE Alu 1 299 -13 351 277 102 15 chr6 185897263 185897400 -3382154 + L1ME LINE L1 637 785 -5611 802 294 73 39 chr6 185897432 185898229 -3381325 + L1ME LINE L1 734 1514 -4892 1927 193 130 5 chr6 185898235 185898809 -3380745 + L1MB8 LINE L1 5215 5856 -328 1882 123 36 66 chr6 185898815 185899180 -3380374 - THE1C LTR MaLR -21 354 1 1294 206 45 3 chr6 185899180 185899466 -3380088 + L1MB8 LINE L1 5872 6169 -9 338 207 28 151 chr6 185900773 185901024 -3378530 - HAL1 LINE L1 -1134 1373 1154 236 114 45 0 chr6 185901096 185901140 -3378414 + (CATA)n Simple_repeat Simple_repeat 3 48 0 782 93 0 8 chr6 185901522 185901640 -3377914 + (GGAA)n Simple_repeat Simple_repeat 2 118 0 476 320 92 39 chr6 185901642 185902023 -3377531 - HAL1 LINE L1 -1689 818 418 2157 119 76 15 chr6 185902375 185902718 -3376836 + THE1B LTR MaLR 1 364 0 2288 103 0 0 chr6 185902718 185903030 -3376524 + THE1B-int LTR MaLR 1 312 -1268 431 273 13 20 chr6 185903209 185903359 -3376195 - HAL1 LINE L1 -2265 242 94 248 230 106 35 chr6 185904601 185904714 -3374840 + MER63 DNA MER1_type 6 752 -84 2216 203 165 22 chr6 185904837 185905473 -3374081 - MER50 LTR ERV1 0 734 8 1442 190 100 43 chr6 185905475 185905844 -3373710 - MLT2C2 LTR ERVL -72 392 3 1484 100 66 7 chr6 185905905 185906572 -3372982 + MER4D LTR ERV1 1 761 -5 12178 152 40 30 chr6 185906577 185908786 -3370768 + MER4D-int LTR ERV1 1 2363 -4395 2053 125 27 0 chr6 185908786 185909083 -3370471 + AluSx SINE Alu 1 305 -7 12178 152 40 30 chr6 185909083 185910511 -3369043 + MER4D-int LTR ERV1 2363 3776 -2982 2224 105 20 3 chr6 185910870 185911174 -3368380 - AluY SINE Alu 0 311 3 26 30 0 0 chr6 185911219 185911252 -3368302 + AT_rich Low_complexity Low_complexity 1 33 0 1864 248 103 55 chr6 185911293 185912081 -3367473 + LTR1B LTR ERV1 1 826 0 20432 157 14 18 chr6 185912209 185918512 -3361042 + HUERS-P2 LTR ERV1 85 6602 -489 1858 185 36 0 chr6 185918520 185918855 -3360699 + HUERS-P2 LTR ERV1 6745 7091 0 858 233 116 58 chr6 185918863 185919224 -3360330 + LTR1B LTR ERV1 2 383 -443 263 122 0 0 chr6 185919236 185919285 -3360269 + LTR1 LTR ERV1 347 395 -390 1095 217 102 77 chr6 185919295 185919687 -3359867 + LTR1B LTR ERV1 333 734 -92 1980 160 22 33 chr6 185919687 185920055 -3359499 + THE1B LTR MaLR 1 364 0 2153 199 69 14 chr6 185924638 185925131 -3354423 - MLT2B1 LTR ERVL 0 520 1 285 212 91 0 chr6 185925313 185925379 -3354175 + L1MA2 LINE L1 19 90 -7475 1808 176 7 0 chr6 185925405 185925706 -3353848 - AluSx SINE Alu -9 303 1 20064 157 43 12 chr6 185925708 185929933 -3349621 + L1MA2 LINE L1 73 4644 -3079 2216 90 0 20 chr6 185929933 185930232 -3349322 + AluY SINE Alu 1 293 -18 20064 157 43 12 chr6 185930232 185933383 -3346171 + L1MA2 LINE L1 4644 7696 -27 751 79 94 8 chr6 185933385 185933512 -3346042 + L1 LINE L1 4205 4342 -1804 324 238 36 24 chr6 185934579 185934663 -3344891 + MER58A DNA MER1_type 7 91 -16 386 232 53 0 chr6 185934884 185934979 -3344575 - MIR SINE MIR -113 149 50 208 254 18 0 chr6 185934984 185935039 -3344515 + (TG)n Simple_repeat Simple_repeat 1 56 0 249 139 0 0 chr6 185935100 185935143 -3344411 + (A)n Simple_repeat Simple_repeat 1 43 0 25 0 0 0 chr6 185936225 185936250 -3343304 + AT_rich Low_complexity Low_complexity 1 25 0 4335 153 58 14 chr6 185937683 185938474 -3341080 - LTR1B LTR ERV1 0 826 1 21 0 0 0 chr6 185938679 185938700 -3340854 + AT_rich Low_complexity Low_complexity 1 21 0 294 276 122 6 chr6 185939622 185939778 -3339776 + L2 LINE L2 3090 3263 -50 25 51 0 0 chr6 185939785 185939824 -3339730 + AT_rich Low_complexity Low_complexity 1 39 0 2544 108 8 0 chr6 185941040 185941391 -3338163 + THE1A LTR MaLR 1 354 -1 2686 134 53 28 chr6 185941640 185942133 -3337421 + MER4B LTR ERV1 1 505 -105 272 95 0 24 chr6 185942440 185942482 -3337072 - L1PA6 LINE L1 -942 5204 5164 * 4553 48 11 39 chr6 185942475 185943168 -3336386 + L1PA6 LINE L1 5208 5880 -274 592 141 0 0 chr6 185943168 185943260 -3336294 + MER4A LTR ERV1 573 664 0 298 167 2 5 chr6 185943260 185943315 -3336239 + MLT1A1 LTR MaLR 283 362 -28 625 297 34 50 chr6 185943344 185943968 -3335586 - L1ME LINE L1 -3499 2581 1964 792 196 0 7 chr6 185944167 185944310 -3335244 - FLAM_A SINE Alu 0 142 1 247 274 164 18 chr6 185944415 185944689 -3334865 - L1ME LINE L1 -4648 1613 1300 835 287 107 61 chr6 185944745 185945433 -3334121 - L1ME LINE L1 -5040 1221 465 1497 121 28 0 chr6 185946284 185946499 -3333055 + L1PA10 LINE L1 5947 6167 -1 737 276 130 15 chr6 185946590 185947250 -3332304 + Charlie2 DNA MER1_type 2060 2795 -67 569 237 29 0 chr6 185947905 185948044 -3331510 - L1MA10 LINE L1 -12 6322 6180 270 115 0 0 chr6 185948051 185948103 -3331451 + (ATG)n Simple_repeat Simple_repeat 1 52 0 3200 203 45 31 chr6 185948119 185948928 -3330626 - L1MB1 LINE L1 -74 6094 5275 23 0 0 0 chr6 185949500 185949523 -3330031 + AT_rich Low_complexity Low_complexity 1 23 0 658 293 42 88 chr6 185949794 185950248 -3329306 - L2 LINE L2 -4 3309 2877 978 272 177 35 chr6 185950278 185951102 -3328452 - L2 LINE L2 -653 2661 1646 593 228 117 36 chr6 185951365 185951693 -3327861 + MLT1F1 LTR MaLR 117 564 -3 198 349 48 0 chr6 185953475 185953558 -3325996 - L3 LINE CR1 -85 1492 1406 679 285 73 27 chr6 185955406 185955775 -3323779 - MLT1B LTR MaLR -4 386 1 714 339 154 20 chr6 185955908 185957078 -3322476 + L2 LINE L2 671 1996 -1318 3179 132 9 83 chr6 185958565 185958703 -3320851 - MER1A DNA MER1_type -2173 527 380 2093 103 27 7 chr6 185958703 185958995 -3320559 - AluSq SINE Alu -15 298 1 3179 132 9 83 chr6 185958995 185959425 -3320129 - MER1A DNA MER1_type -2320 380 1 22 0 0 0 chr6 185963778 185963800 -3315754 + AT_rich Low_complexity Low_complexity 1 22 0 247 312 26 39 chr6 185964907 185965061 -3314493 + C-rich Low_complexity Low_complexity 3 154 0 237 293 60 38 chr6 185965138 185965271 -3314283 + L2 LINE L2 3110 3245 -68 22 88 0 0 chr6 185966103 185966160 -3313394 + AT_rich Low_complexity Low_complexity 1 57 0 2331 82 0 0 chr6 185966326 185966632 -3312922 + AluSx SINE Alu 1 306 0 277 276 31 51 chr6 185966761 185966859 -3312695 - MER5A DNA MER1_type -87 102 7 202 358 41 8 chr6 185967713 185967836 -3311718 - MIR SINE MIR -62 146 20 487 306 92 34 chr6 185969073 185969279 -3310275 + MIR SINE MIR 31 248 -14 325 288 28 28 chr6 185969523 185969700 -3309854 + C-rich Low_complexity Low_complexity 3 179 0 313 353 80 30 chr6 185969925 185970126 -3309428 + HAL1b LINE L1 229 439 -909 415 278 129 42 chr6 185970133 185970396 -3309158 + HAL1b LINE L1 485 770 -578 473 342 104 29 chr6 185970425 185970885 -3308669 + HAL1b LINE L1 826 1345 -3 222 229 0 0 chr6 185972976 185973024 -3306530 - L2 LINE L2 0 3313 3266 2267 127 14 11 chr6 185973847 185974201 -3305353 - THE1A LTR MaLR 0 355 1 10826 90 12 32 chr6 185974201 185975353 -3304201 - THE1A-int LTR MaLR 0 1580 468 7420 44 1 3 chr6 185975353 185976758 -3302796 + L1PA6 LINE L1 4751 6153 -1 10826 90 12 32 chr6 185976758 185977217 -3302337 - THE1A-int LTR MaLR -1112 468 1 2378 124 8 6 chr6 185977217 185977571 -3301983 - THE1A LTR MaLR 0 355 1 2512 62 16 0 chr6 185980072 185980378 -3299176 + AluY SINE Alu 1 311 0 333 281 137 7 chr6 185982875 185983028 -3296526 - L2 LINE L2 -509 2805 2633 2223 135 0 0 chr6 185983450 185983746 -3295808 - AluSx SINE Alu -16 296 1 198 0 0 0 chr6 185987081 185987103 -3292451 + (TA)n Simple_repeat Simple_repeat 2 23 0 300 53 0 0 chr6 185987205 185987243 -3292311 + (TG)n Simple_repeat Simple_repeat 1 38 0 1472 126 134 12 chr6 185987243 185987489 -3292065 - AluSg SINE Alu -33 277 2 774 313 34 6 chr6 185987873 185988225 -3291329 - L1MA9 LINE L1 -38 6274 5913 840 273 73 30 chr6 186189597 186190063 -3089491 - MER34B LTR ERV1 -42 523 1 447 31 15 15 chr6 186190265 186190330 -3089224 - MER41B LTR ERV1 -88 547 483 22 0 0 0 chr6 186190552 186190574 -3088980 + AT_rich Low_complexity Low_complexity 1 22 0 904 230 65 8 chr6 186191148 186191396 -3088158 + L1MC4a LINE L1 5570 5831 -1977 263 237 51 17 chr6 186191543 186191661 -3087893 + L1ME4a LINE L1 5812 5933 -188 2776 90 0 0 chr6 186193548 186193903 -3085651 - THE1A LTR MaLR 0 355 1 261 226 148 26 chr6 186194173 186194328 -3085226 + Charlie2 DNA MER1_type 2672 2845 -17 303 300 191 27 chr6 186194778 186195071 -3084483 - L3 LINE CR1 -184 1393 1053 642 264 68 27 chr6 186195334 186195554 -3084000 + MIR SINE MIR 34 262 0 1635 178 0 7 chr6 186196138 186196431 -3083123 - AluJb SINE Alu -19 293 3 1630 171 7 16 chr6 186197927 186198231 -3081323 - AluJb SINE Alu -11 301 1 1837 151 0 0 chr6 186198385 186198694 -3080860 - AluSx SINE Alu 0 309 1 1652 169 51 0 chr6 186198791 186199086 -3080468 - AluJo SINE Alu -2 310 1 191 268 16 30 chr6 186199584 186199667 -3079887 + MIR SINE MIR 86 165 -43 772 215 177 72 chr6 186199870 186200260 -3079294 - MLT1J LTR MaLR -6 505 75 273 269 32 0 chr6 186200468 186200561 -3078993 + L1M4 LINE L1 2916 3011 -3135 1693 178 3 25 chr6 186200969 186201283 -3078271 - AluJo SINE Alu -5 307 1 206 313 139 9 chr6 186202267 186202382 -3077172 - L2 LINE L2 -985 2329 2200 26 64 0 0 chr6 186202416 186202463 -3077091 + AT_rich Low_complexity Low_complexity 1 47 0 297 258 13 6 chr6 186204209 186204368 -3075186 + (CA)n Simple_repeat Simple_repeat 2 161 0 454 200 17 28 chr6 186204383 186204563 -3074991 + (CA)n Simple_repeat Simple_repeat 2 179 0 1908 110 3 37 chr6 186205187 186205486 -3074068 + AluSg SINE Alu 1 289 -21 215 296 139 19 chr6 186205666 186205774 -3073780 + MIR3 SINE MIR 81 201 -7 427 246 135 68 chr6 186206847 186207099 -3072455 - L1ME4a LINE L1 -1 6120 5852 244 309 0 0 chr6 186207102 186207186 -3072368 - L1ME4a LINE L1 -1979 5829 5746 1059 167 0 0 chr6 186207324 186207498 -3072056 - AluJb SINE Alu -5 307 134 2319 74 3 7 chr6 186207785 186208094 -3071460 - AluSg SINE Alu -2 308 1 1270 148 100 0 chr6 186208260 186208490 -3071064 + AluSx SINE Alu 58 310 -2 406 275 121 12 chr6 186208490 186208730 -3070824 + L2 LINE L2 2534 2799 -515 300 262 143 52 chr6 186208863 186208932 -3070622 - L1 LINE L1 -1740 4406 4345 2311 71 0 13 chr6 186208932 186209242 -3070312 + AluSq SINE Alu 1 306 -7 300 262 143 52 chr6 186209242 186209382 -3070172 - L1 LINE L1 -1801 4345 4178 1245 64 6 0 chr6 186210502 186210659 -3068895 + AluY SINE Alu 1 158 -153 261 272 96 52 chr6 186211355 186211491 -3068063 - MLT1G LTR MaLR -431 159 18 261 313 10 10 chr6 186212034 186212133 -3067421 - L2 LINE L2 -994 2320 2222 3964 113 17 66 chr6 186213270 186213966 -3065588 - MER4A LTR ERV1 0 664 3 1897 193 47 16 chr6 186213966 186214392 -3065162 - MER6A DNA MER2_type -95 510 332 565 277 45 0 chr6 186214495 186214650 -3064904 - MER6A DNA MER2_type -443 162 1 470 304 89 20 chr6 186214912 186215192 -3064362 - L1ME4a LINE L1 -467 5654 5353 1378 154 100 12 chr6 186215859 186216153 -3063401 - AluJb SINE Alu 0 317 1 184 213 64 21 chr6 186216396 186216443 -3063111 + L2 LINE L2 3221 3269 -3 775 220 104 0 chr6 186216555 186216737 -3062817 - MER20 DNA MER1_type -14 205 5 387 218 0 13 chr6 186217080 186217158 -3062396 + Tigger2 DNA MER2_type 1 77 -2641 264 169 352 0 chr6 186217267 186217338 -3062216 - MER8 DNA MER2_type -99 140 45 995 319 88 13 chr6 186220481 186221080 -3058474 - ERVL LTR ERVL -395 5369 4726 572 265 11 39 chr6 186221382 186221563 -3057991 - ERVL LTR ERVL -1480 4284 4109 371 274 116 61 chr6 186221588 186221865 -3057689 - ERVL LTR ERVL -1889 3765 3474 224 233 0 0 chr6 186221865 186221908 -3057646 + (TG)n Simple_repeat Simple_repeat 2 44 0 451 287 35 68 chr6 186221919 186222200 -3057354 - ERVL LTR ERVL -2142 3343 3197 681 311 72 55 chr6 186222262 186222898 -3056656 - ERVL LTR ERVL -2625 3139 2493 478 203 7 26 chr6 186223373 186223526 -3056028 + CT-rich Low_complexity Low_complexity 1 150 0 367 239 5 0 chr6 186223543 186223620 -3055934 - FRAM SINE Alu -34 132 66 2224 103 6 0 chr6 186223645 186223956 -3055598 - AluSq SINE Alu 0 313 1 812 293 95 20 chr6 186224793 186225384 -3054170 - L1MC4 LINE L1 -2 8040 7406 187 345 160 15 chr6 186225910 186226116 -3053438 + MIR SINE MIR 25 260 -2 246 314 49 0 chr6 186227679 186227781 -3051773 - MIR SINE MIR -46 216 110 250 242 129 32 chr6 186228000 186228124 -3051430 - MIR SINE MIR -64 198 63 265 267 38 38 chr6 186228636 186228741 -3050813 - L2 LINE L2 -12 3301 3197 730 237 32 0 chr6 186232236 186232392 -3047162 + L1PB4 LINE L1 5995 6155 -1 700 271 175 12 chr6 186232715 186233040 -3046514 - L1MC4a LINE L1 -1865 5943 5566 1061 327 74 37 chr6 186233167 186233896 -3045658 - L1MC4a LINE L1 -770 5376 4623 21 36 0 0 chr6 186233906 186233934 -3045620 + AT_rich Low_complexity Low_complexity 1 28 0 226 327 35 0 chr6 186233961 186234074 -3045480 - L1MC4a LINE L1 -1543 4603 4487 381 235 197 22 chr6 186234110 186234293 -3045261 - L1 LINE L1 -1695 4451 4237 2002 169 12 15 chr6 186238951 186238968 -3040586 - MER57A LTR ERV1 0 403 387 2387 68 29 23 chr6 186238968 186239275 -3040279 + AluSp SINE Alu 1 309 -4 2002 169 12 15 chr6 186239275 186239659 -3039895 - MER57A LTR ERV1 -16 387 3 223 367 0 0 chr6 186245296 186245473 -3034081 + (CCA)n Simple_repeat Simple_repeat 3 179 0 235 283 50 0 chr6 186248910 186249009 -3030545 + MER69 DNA AcHobo 292 395 -831 664 260 78 48 chr6 186249012 186249156 -3030398 + MER69 DNA AcHobo 2073 2211 -315 2348 98 0 0 chr6 186249156 186249453 -3030101 + AluSx SINE Alu 1 297 -15 664 260 78 48 chr6 186249453 186249639 -3029915 + MER69 DNA AcHobo 2211 2413 -113 13852 174 29 9 chr6 186251079 186252713 -3026841 - L1PB1 LINE L1 -2 6865 5266 207 0 0 0 chr6 186252713 186252736 -3026818 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13852 174 29 9 chr6 186252736 186253021 -3026533 - L1PB1 LINE L1 -1601 5266 4988 189 0 0 0 chr6 186253021 186253042 -3026512 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 13852 174 29 9 chr6 186253042 186255549 -3024005 - L1PB1 LINE L1 -1879 4988 2532 432 198 21 10 chr6 186255550 186255646 -3023908 + MER4A LTR ERV1 2 98 -566 1699 141 12 25 chr6 186255646 186255996 -3023558 + MER4A LTR ERV1 261 664 0 3233 63 194 144 chr6 186256001 186256771 -3022783 + MER4A-int LTR ERV1 3 814 -5784 198 0 0 0 chr6 186256771 186256793 -3022761 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 283 157 0 39 chr6 186256864 186256915 -3022639 + LTR49 LTR ERV1 263 311 -284 6307 101 53 24 chr6 186256962 186258000 -3021554 + MER4A-int LTR ERV1 5529 6596 -2 567 124 21 10 chr6 186258011 186258108 -3021446 + MER4A LTR ERV1 1 98 -566 1801 147 3 22 chr6 186258108 186258458 -3021096 + MER4A LTR ERV1 263 664 0 14424 115 63 19 chr6 186258458 186259106 -3020448 - L1PBa LINE L1 -4328 2535 1916 2025 135 8 42 chr6 186259106 186259483 -3020071 + THE1B LTR MaLR 1 364 0 14424 115 63 19 chr6 186259483 186261262 -3018292 - L1PBa LINE L1 -4947 1916 3 225 292 95 15 chr6 186261249 186261386 -3018168 - L1MA7 LINE L1 -121 6170 6023 * 880 93 16 0 chr6 186262132 186262261 -3017293 - L1PBa LINE L1 -5174 1689 1559 4834 151 45 34 chr6 186262682 186263726 -3015828 + L1MA5 LINE L1 5214 6267 -33 407 341 22 44 chr6 186264264 186264446 -3015108 - MER5B DNA MER1_type 0 178 1 292 223 174 16 chr6 186265091 186265212 -3014342 - L2 LINE L2 -9 3304 3165 1077 174 9 14 chr6 186267086 186267305 -3012249 - MLT1A1 LTR MaLR -120 245 28 320 376 38 19 chr6 186268673 186268830 -3010724 - L1MC5 LINE L1 -10 7951 7792 397 341 80 0 chr6 186269320 186269496 -3010058 + MIR SINE MIR 72 261 -1 6218 260 72 28 chr6 186269877 186273637 -3005917 + L1MDa LINE L1 1647 5785 -755 953 228 146 37 chr6 186273904 186274307 -3005247 + MLT1D LTR MaLR 1 447 -58 201 359 22 0 chr6 186276141 186276233 -3003321 + L2 LINE L2 2680 2773 -541 344 224 0 61 chr6 186276292 186276439 -3003115 + (CACGC)n Simple_repeat Simple_repeat 4 141 0 253 135 38 45 chr6 186276443 186276576 -3002978 + (CACAC)n Simple_repeat Simple_repeat 5 136 0 364 117 22 62 chr6 186276596 186276775 -3002779 + (CACAC)n Simple_repeat Simple_repeat 5 176 0 279 175 6 62 chr6 186276828 186277005 -3002549 + (CACAC)n Simple_repeat Simple_repeat 5 171 0 3357 114 37 29 chr6 186277729 186278324 -3001230 - MER4A LTR ERV1 0 600 1 424 43 18 0 chr6 186280666 186280728 -2998826 - L1PA7 LINE L1 -263 5868 5806 323 39 77 0 chr6 186280729 186280781 -2998773 + L1PA8 LINE L1 6116 6171 -1 1368 280 158 4 chr6 186283362 186283730 -2995824 - MER82 DNA MER2_type 0 653 343 1918 128 169 5 chr6 186283730 186284098 -2995456 + MSTA LTR MaLR 1 428 0 1368 280 158 4 chr6 186284098 186284279 -2995275 - MER82 DNA MER2_type -310 343 19 486 258 8 15 chr6 186284352 186284484 -2995070 + MLT1D LTR MaLR 436 566 -1 2342 100 3 0 chr6 186284846 186285147 -2994407 - AluSp SINE Alu -11 302 1 296 329 53 7 chr6 186286508 186286660 -2992894 - L1MC5 LINE L1 -187 7774 7616 629 313 52 7 chr6 186286875 186287166 -2992388 + L2 LINE L2 2112 2415 -899 1772 194 112 26 chr6 186287875 186288340 -2991214 - MLT1D LTR MaLR 0 505 1 336 309 0 6 chr6 186289251 186289733 -2989821 + (TG)n Simple_repeat Simple_repeat 1 478 0 193 287 15 0 chr6 186289796 186289932 -2989622 + (TG)n Simple_repeat Simple_repeat 1 138 0 1647 175 62 44 chr6 186291169 186291557 -2987997 - MLT2C1 LTR ERVL -2 395 1 27 0 0 0 chr6 186292223 186292250 -2987304 + AT_rich Low_complexity Low_complexity 1 27 0 6581 71 12 247 chr6 186292310 186294091 -2985463 - SVA Other Other -1 1385 24 1921 107 79 28 chr6 186297018 186297374 -2982180 + THE1C LTR MaLR 1 374 -1 45 62 0 0 chr6 186297572 186297652 -2981902 + AT_rich Low_complexity Low_complexity 1 80 0 230 379 145 0 chr6 186297779 186297924 -2981630 - MER5A DNA MER1_type 0 189 24 599 200 12 11 chr6 186299916 186300275 -2979279 + (CA)n Simple_repeat Simple_repeat 1 359 0 594 244 14 0 chr6 186300295 186300581 -2978973 + (CA)n Simple_repeat Simple_repeat 1 290 0 183 226 0 0 chr6 186301343 186301374 -2978180 - L2 LINE L2 -12 3260 3230 322 118 18 21 chr6 186301445 186301512 -2978042 - MLT2D LTR ERVL 0 554 454 1050 190 103 93 chr6 186301577 186301958 -2977596 - MLT2D LTR ERVL -39 476 2 295 289 10 0 chr6 186304928 186305025 -2974529 - MER58B DNA MER1_type -16 325 228 285 51 0 0 chr6 186305261 186305300 -2974254 + (TTAA)n Simple_repeat Simple_repeat 3 41 0 2065 90 11 0 chr6 186305300 186305579 -2973975 - AluSc SINE Alu -27 282 1 23 0 0 0 chr6 186305676 186305699 -2973855 + AT_rich Low_complexity Low_complexity 1 23 0 2010 122 0 0 chr6 186305964 186306252 -2973302 + AluSg SINE Alu 5 292 -18 378 308 83 39 chr6 186306354 186306510 -2973044 - L1M4 LINE L1 -1312 4834 4672 1772 149 3 20 chr6 186306520 186306816 -2972738 - AluJo SINE Alu -21 291 1 9279 180 21 34 chr6 186306929 186308084 -2971470 - L1MA4 LINE L1 0 6482 5314 1988 95 4 0 chr6 186308084 186308358 -2971196 - AluSq SINE Alu 0 313 39 9279 180 21 34 chr6 186308358 186309950 -2969604 - L1MA4 LINE L1 -1168 5314 3741 7440 113 4 24 chr6 186309956 186310903 -2968651 - L1MA2 LINE L1 -8 6296 5388 2318 79 0 0 chr6 186310903 186311194 -2968360 - AluY SINE Alu -20 291 1 7440 113 4 24 chr6 186311194 186312089 -2967465 - L1MA2 LINE L1 -916 5388 4476 6073 204 19 8 chr6 186312086 186313425 -2966129 - L1MA4 LINE L1 -2576 3752 2398 * 1198 192 18 0 chr6 186313425 186313649 -2965905 + AluJb SINE Alu 77 304 -8 6323 194 60 22 chr6 186313655 186315131 -2964423 - L1MA4 LINE L1 -3919 2409 840 181 56 28 28 chr6 186315131 186315167 -2964387 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 6323 194 60 22 chr6 186315167 186316039 -2963515 - L1MA4 LINE L1 -5488 840 3 275 317 0 39 chr6 186316120 186316224 -2963330 + MER117 DNA MER1_type 94 193 -4 633 164 45 0 chr6 186316452 186316586 -2962968 - AluJb SINE Alu -36 276 137 259 301 55 0 chr6 186317984 186318057 -2961497 - MIR SINE MIR -102 106 30 295 331 7 40 chr6 186318226 186318377 -2961177 - MIR SINE MIR -114 148 3 2097 97 7 7 chr6 186319266 186319565 -2959989 + AluSx SINE Alu 1 299 -13 1990 278 108 34 chr6 186320135 186321612 -2957942 + L1MEc LINE L1 247 1853 -4754 399 148 327 0 chr6 186321627 186321728 -2957826 + L1MEc LINE L1 57 190 -6236 2119 156 93 30 chr6 186321843 186322304 -2957250 + L1MEc LINE L1 589 1078 -5348 * 4021 229 60 20 chr6 186322295 186323367 -2956187 + L1MEc LINE L1 3176 4304 -2122 2034 109 6 32 chr6 186323367 186323679 -2955875 + AluY SINE Alu 2 305 -6 4021 229 60 20 chr6 186323679 186323825 -2955729 + L1MEc LINE L1 4304 4443 -1983 200 333 0 13 chr6 186323847 186323925 -2955629 + L2 LINE L2 3233 3309 -4 24 77 0 0 chr6 186324034 186324086 -2955468 + AT_rich Low_complexity Low_complexity 1 52 0 313 171 114 0 chr6 186324737 186324807 -2954747 - MLT2C2 LTR ERVL -10 454 377 21 36 0 0 chr6 186325156 186325184 -2954370 + AT_rich Low_complexity Low_complexity 1 28 0 34 72 0 0 chr6 186325381 186325450 -2954104 + AT_rich Low_complexity Low_complexity 1 69 0 349 145 18 5 chr6 186325856 186325931 -2953623 + AluS SINE Alu 14 62 -246 1537 116 82 0 chr6 186326097 186326365 -2953189 + AluSq SINE Alu 12 301 -12 497 232 268 16 chr6 186326622 186326812 -2952742 + MIR SINE MIR 11 248 -14 333 316 146 19 chr6 186327013 186327387 -2952167 - L2 LINE L2 -57 3256 2829 1077 254 77 50 chr6 186327388 186327853 -2951701 - MLT1H LTR MaLR 0 549 72 2137 115 7 0 chr6 186327869 186328165 -2951389 + AluSq SINE Alu 1 298 -15 203 213 62 38 chr6 186328931 186329011 -2950543 - MER5C DNA MER1_type -137 187 106 185 143 48 0 chr6 186329012 186329054 -2950500 + (TATG)n Simple_repeat Simple_repeat 3 46 0 812 174 0 0 chr6 186329630 186329762 -2949792 + FLAM_C SINE Alu 2 133 0 471 139 30 59 chr6 186330137 186330238 -2949316 + THE1C LTR MaLR 201 298 -77 27364 127 10 17 chr6 186330238 186336660 -2942894 + L1PA8A LINE L1 8 6441 -5 363 331 40 0 chr6 186337321 186337445 -2942109 - L2 LINE L2 0 3313 3185 213 276 90 90 chr6 186337581 186337715 -2941839 + L2 LINE L2 2703 2836 -478 1998 42 0 17 chr6 186338127 186338363 -2941191 - AluY SINE Alu -79 232 1 679 326 121 15 chr6 186338382 186338771 -2940783 + L2 LINE L2 289 718 -2596 1021 130 0 152 chr6 186338772 186339003 -2940551 + Tigger6b DNA MER2_type 2 197 -1400 499 243 113 22 chr6 186339004 186339189 -2940365 - MLT1A2 LTR MaLR 0 390 173 917 167 0 19 chr6 186339321 186339477 -2940077 - MLT1A2 LTR MaLR -221 153 1 2928 190 32 15 chr6 186339480 186340081 -2939473 + Tigger6b DNA MER2_type 214 824 -773 1874 193 89 36 chr6 186340086 186340579 -2938975 + Tigger6b DNA MER2_type 1079 1597 0 1810 357 123 20 chr6 186340593 186341200 -2938354 + L2 LINE L2 775 1318 -1996 2153 74 0 0 chr6 186341200 186341457 -2938097 + AluY SINE Alu 1 257 -54 1810 357 123 20 chr6 186341457 186342015 -2937539 + L2 LINE L2 1318 2060 -1254 204 200 100 86 chr6 186342123 186342193 -2937361 + L2 LINE L2 3202 3272 0 430 317 35 7 chr6 186342278 186342420 -2937134 - MIR SINE MIR -112 150 5 2088 141 47 18 chr6 186342876 186343258 -2936296 - MER65A LTR ERV1 0 445 53 185 309 0 0 chr6 186394824 186394879 -2884675 - L2 LINE L2 -18 3254 3200 320 291 108 39 chr6 186395740 186395943 -2883611 + L2 LINE L2 2244 2460 -854 2368 84 0 16 chr6 186396977 186397285 -2882269 - AluSg SINE Alu -7 303 1 2242 92 0 0 chr6 186398293 186398576 -2880978 - AluSg SINE Alu -27 283 1 2423 84 0 0 chr6 186399234 186399545 -2880009 - AluSq SINE Alu -2 311 1 1758 213 31 3 chr6 186400823 186401176 -2878378 - MLT1A1 LTR MaLR -1 364 2 388 154 15 0 chr6 186405417 186405482 -2874072 + L1MA6 LINE L1 6235 6300 0 4231 130 12 68 chr6 186405702 186406433 -2873121 - LTR8 LTR ERV1 -1 690 1 1618 156 159 73 chr6 186406796 186407168 -2872386 - MER4A LTR ERV1 0 664 261 637 120 0 20 chr6 186407168 186407268 -2872286 - MER4A LTR ERV1 -566 98 1 456 291 0 0 chr6 186407268 186407587 -2871967 + (TG)n Simple_repeat Simple_repeat 1 319 0 205 216 0 0 chr6 186407589 186407626 -2871928 + (TATATG)n Simple_repeat Simple_repeat 4 40 0 546 270 0 0 chr6 186407632 186407810 -2871744 + (TG)n Simple_repeat Simple_repeat 2 179 0 519 268 0 0 chr6 186407845 186408024 -2871530 + (TG)n Simple_repeat Simple_repeat 2 180 0 196 279 117 27 chr6 186408075 186408186 -2871368 - L2 LINE L2 0 3313 3193 4347 104 24 2 chr6 186408398 186408985 -2870569 - MER4A LTR ERV1 0 600 1 4585 124 24 38 chr6 186409075 186409817 -2869737 + MER4E LTR ERV1 48 779 0 198 0 0 0 chr6 186410540 186410562 -2868992 + (T)n Simple_repeat Simple_repeat 1 22 0 3394 151 14 79 chr6 186411177 186411514 -2868040 + LTR9 LTR ERV1 1 276 -336 2132 120 0 0 chr6 186411514 186411805 -2867749 + AluSq SINE Alu 1 291 -22 3394 151 14 79 chr6 186411805 186412122 -2867432 + LTR9 LTR ERV1 276 612 0 369 315 51 53 chr6 186412205 186412674 -2866880 - L1MDa LINE L1 -3158 3382 2911 2250 77 7 3 chr6 186412674 186412981 -2866573 - AluSc SINE Alu 0 308 1 369 315 51 53 chr6 186412981 186413096 -2866458 - L1MDa LINE L1 -3629 2911 2797 2546 179 10 2 chr6 186413228 186413719 -2865835 - L1P LINE L1 -825 5321 4827 1434 143 5 0 chr6 186413738 186413962 -2865592 + L1PA14 LINE L1 5931 6155 -6 329 254 54 102 chr6 186413986 186414191 -2865363 - L1MDa LINE L1 -3942 2598 2404 2273 109 3 10 chr6 186414474 186414786 -2864768 - AluSx SINE Alu -2 310 1 369 303 10 0 chr6 186416317 186416416 -2863138 + Tigger3b DNA MER2_type 1 100 -1131 * 773 105 65 0 chr6 186416411 186416535 -2863019 + Tigger3b DNA MER2_type 268 399 -832 993 134 0 82 chr6 186416536 186416730 -2862824 - AluSg/x SINE Alu -4 308 131 258 32 0 0 chr6 186416730 186416761 -2862793 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2095 61 43 32 chr6 186416761 186417040 -2862514 - AluY SINE Alu -29 282 1 2168 117 0 3 chr6 186417047 186417337 -2862217 - AluSx SINE Alu -23 289 1 4394 126 91 57 chr6 186417337 186417620 -2861934 + Tigger3b DNA MER2_type 392 664 -2365 2023 116 0 0 chr6 186417620 186417895 -2861659 + AluSx SINE Alu 37 311 -1 4394 126 91 57 chr6 186417895 186418138 -2861416 + Tigger3b DNA MER2_type 664 897 -2132 3837 130 12 22 chr6 186418138 186418537 -2861017 - L1PB3 LINE L1 -2 6152 5750 2209 123 5 59 chr6 186418537 186418912 -2860642 + THE1A LTR MaLR 1 355 0 12522 88 8 2 chr6 186418912 186420483 -2859071 + THE1B-int LTR MaLR 1 1580 0 2224 143 22 22 chr6 186420483 186420847 -2858707 + THE1B LTR MaLR 1 364 0 3837 130 12 22 chr6 186420847 186421039 -2858515 - L1PB3 LINE L1 -401 5753 5565 4394 126 91 57 chr6 186421039 186421324 -2858230 + Tigger3b DNA MER2_type 897 1232 0 11673 179 13 11 chr6 186421403 186421765 -2857789 - L1PB4 LINE L1 -1 6155 5795 279 0 0 0 chr6 186421765 186421796 -2857758 + (TG)n Simple_repeat Simple_repeat 2 32 0 11673 179 13 11 chr6 186421796 186422246 -2857308 - L1PB4 LINE L1 -361 5795 5347 4959 87 13 2 chr6 186422246 186422880 -2856674 + L1PA10 LINE L1 5523 6165 -3 11673 179 13 11 chr6 186422880 186425309 -2854245 - L1PB4 LINE L1 -809 5347 2906 266 273 67 38 chr6 186425322 186425517 -2854037 - MIR SINE MIR -11 251 13 264 327 82 10 chr6 186425570 186425778 -2853776 + L1ME4a LINE L1 5850 6072 -49 482 119 0 0 chr6 186425974 186426041 -2853513 + Alu SINE Alu 235 301 -11 2340 105 0 13 chr6 186426048 186426362 -2853192 + AluSx SINE Alu 1 310 -2 23 33 0 0 chr6 186426522 186426552 -2853002 + AT_rich Low_complexity Low_complexity 1 30 0 278 246 0 0 chr6 186427193 186427250 -2852304 - L2 LINE L2 -6 3307 3251 315 118 59 0 chr6 186427475 186427526 -2852028 - MLT1C LTR MaLR 0 467 414 2448 150 13 0 chr6 186427526 186427905 -2851649 + MER75 DNA T2_type 1 384 -130 8635 53 2 0 chr6 186427905 186428982 -2850572 - L1P LINE L1 -4187 1959 881 6815 29 0 1 chr6 186428974 186429799 -2849755 + L1P LINE L1 2698 3521 -2625 * 241 287 17 17 chr6 186429873 186429988 -2849566 - L1M4 LINE L1 -1009 5137 5023 1957 19 0 0 chr6 186429988 186430202 -2849352 + L1PA4 LINE L1 5942 6155 0 970 107 7 0 chr6 186430202 186430342 -2849212 + MER75 DNA T2_type 364 504 0 868 275 28 36 chr6 186430342 186430594 -2848960 - MLT1C LTR MaLR -49 418 168 1379 223 118 6 chr6 186430594 186430949 -2848605 + MSTD LTR MaLR 2 396 0 868 275 28 36 chr6 186430949 186431054 -2848500 - MLT1C LTR MaLR -299 168 64 375 23 0 0 chr6 186431271 186431315 -2848239 + (TG)n Simple_repeat Simple_repeat 1 44 0 351 245 128 39 chr6 186431784 186431988 -2847566 + L1MCc LINE L1 1296 1517 -4906 516 277 52 30 chr6 186432075 186432342 -2847212 + L1MCc LINE L1 3114 3386 -3555 21 36 0 0 chr6 186432556 186432584 -2846970 + AT_rich Low_complexity Low_complexity 1 28 0 338 326 98 35 chr6 186432855 186433532 -2846022 + HAL1b LINE L1 61 779 -569 1377 195 57 3 chr6 186434014 186434296 -2845258 - AluJo SINE Alu -15 297 1 334 313 98 50 chr6 186434316 186435303 -2844251 + L1P LINE L1 2176 3114 -3032 2177 103 0 3 chr6 186435303 186435624 -2843930 - AluSx SINE Alu 0 320 1 334 313 98 50 chr6 186435624 186436969 -2842585 + L1P LINE L1 3114 4624 -1522 803 264 62 12 chr6 186437137 186437379 -2842175 + L1MC4 LINE L1 6701 6954 -1088 529 245 68 39 chr6 186437603 186437882 -2841672 + L1MC5 LINE L1 6963 7241 -737 2153 193 50 17 chr6 186437892 186438368 -2841186 + L1M3 LINE L1 5327 5818 -350 376 322 58 0 chr6 186439763 186439937 -2839617 + MIR SINE MIR 79 262 0 449 176 19 9 chr6 186440424 186440532 -2839022 + MER5A DNA MER1_type 1 109 -80 15034 133 86 4 chr6 186440620 186441671 -2837883 + Tigger2 DNA MER2_type 1 965 -1753 2377 110 0 0 chr6 186441671 186441980 -2837574 + AluSx SINE Alu 1 309 -3 15034 133 86 4 chr6 186441980 186442315 -2837239 + Tigger2 DNA MER2_type 965 1271 -1447 2362 84 27 0 chr6 186442315 186442613 -2836941 - AluSc SINE Alu -3 306 1 15034 133 86 4 chr6 186442613 186443738 -2835816 + Tigger2 DNA MER2_type 1271 2718 0 2021 222 53 0 chr6 186443853 186444321 -2835233 - L1MA9 LINE L1 -958 5188 4696 3493 206 33 37 chr6 186444322 186445420 -2834134 + L1MA9 LINE L1 5193 6287 -25 261 0 0 0 chr6 186445648 186445677 -2833877 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 264 59 0 0 chr6 186445676 186445710 -2833844 + (TA)n Simple_repeat Simple_repeat 1 34 0 2250 103 3 3 chr6 186446915 186447217 -2832337 + AluSq SINE Alu 1 302 -11 303 28 0 0 chr6 186448220 186448256 -2831298 + (TA)n Simple_repeat Simple_repeat 1 36 0 809 225 17 0 chr6 186448646 186448819 -2830735 + L1M4 LINE L1 17 192 -6350 1235 222 115 23 chr6 186449260 186449723 -2829831 - MER41B LTR ERV1 0 598 141 21 0 0 0 chr6 186450708 186450729 -2828825 + AT_rich Low_complexity Low_complexity 1 21 0 734 169 69 69 chr6 186451182 186451388 -2828166 - MLT2B1 LTR ERVL -48 455 240 1873 151 13 31 chr6 186452395 186452713 -2826841 - AluJo SINE Alu 0 312 1 272 27 27 0 chr6 186453754 186453791 -2825763 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 579 141 40 0 chr6 186453792 186453941 -2825613 + GA-rich Low_complexity Low_complexity 2 156 0 1066 186 100 71 chr6 186453944 186453963 -2825591 - MLT2B1 LTR ERVL -46 474 457 267 31 0 0 chr6 186453963 186453995 -2825559 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 1066 186 100 71 chr6 186453995 186454286 -2825268 - MLT2B1 LTR ERVL -63 457 155 1069 176 111 5 chr6 186455592 186455808 -2823746 + MER8 DNA MER2_type 1 239 0 325 246 93 66 chr6 186456273 186456456 -2823098 - L1ME LINE L1 -370 5751 5564 2493 68 0 19 chr6 186456620 186456931 -2822623 - AluSc SINE Alu -4 305 1 388 202 53 0 chr6 186457186 186457280 -2822274 - L1MCc LINE L1 -4952 1471 1373 1602 171 0 32 chr6 186457334 186457644 -2821910 - AluJb SINE Alu -12 300 1 29 0 0 0 chr6 186457909 186457938 -2821616 + AT_rich Low_complexity Low_complexity 1 29 0 2400 94 0 0 chr6 186458344 186458643 -2820911 - AluSq SINE Alu -14 299 1 1415 143 127 4 chr6 186463251 186463503 -2816051 + AluJb SINE Alu 6 288 -24 2075 157 36 39 chr6 186464725 186465282 -2814272 + MLT2A2 LTR ERVL 2 554 0 1969 259 73 13 chr6 186466675 186467788 -2811766 - L1MEc LINE L1 -3135 3080 1901 1606 204 36 17 chr6 186467788 186468145 -2811409 + MLT1A1 LTR MaLR 1 364 -1 1969 259 73 13 chr6 186468145 186468257 -2811297 - L1MEc LINE L1 -4314 1901 1797 25 51 0 0 chr6 186468450 186468489 -2811065 + AT_rich Low_complexity Low_complexity 1 39 0 2471 102 11 8 chr6 186468783 186469137 -2810417 - THE1A LTR MaLR 0 355 1 500 332 84 5 chr6 186469161 186469375 -2810179 - MIR SINE MIR -12 250 20 236 276 97 35 chr6 186470436 186470581 -2808973 - MER5A DNA MER1_type -22 167 14 21 57 0 0 chr6 186470824 186470859 -2808695 + AT_rich Low_complexity Low_complexity 1 35 0 453 209 73 0 chr6 186471429 186471539 -2808015 - FLAM_A SINE Alu -24 118 1 1626 243 83 40 chr6 186471772 186472709 -2806845 - L1ME2 LINE L1 -129 6035 4997 1263 243 37 29 chr6 186472710 186473093 -2806461 - MLT1E LTR MaLR -15 578 193 247 309 0 0 chr6 186473254 186473335 -2806219 - L1ME2 LINE L1 -1195 4951 4871 284 358 58 5 chr6 186475146 186475336 -2804218 - MIR3 SINE MIR -6 202 3 568 136 16 0 chr6 186476091 186476216 -2803338 + (CA)n Simple_repeat Simple_repeat 1 127 0 256 241 60 24 chr6 186476575 186476658 -2802896 + MIR SINE MIR 56 141 -121 477 224 61 41 chr6 186477249 186477396 -2802158 + MER58A DNA MER1_type 46 195 -29 2236 92 0 7 chr6 186477423 186477707 -2801847 - AluSq SINE Alu -1 312 31 384 246 55 0 chr6 186477717 186477827 -2801727 - L2 LINE L2 -607 2707 2592 2022 141 0 0 chr6 186478176 186478466 -2801088 + AluJo SINE Alu 3 292 -20 2046 137 0 3 chr6 186478469 186478781 -2800773 + AluSx SINE Alu 1 311 0 5252 180 48 24 chr6 186478991 186480608 -2798946 - L1MC1 LINE L1 -3 6330 4672 1018 123 6 0 chr6 186480668 186480831 -2798723 - L1MA5 LINE L1 -44 6256 6093 * 5040 225 35 34 chr6 186480811 186482248 -2797306 - L1MC1 LINE L1 -1456 4690 3253 1406 211 25 72 chr6 186482838 186483321 -2796233 - L1MC/D LINE L1 -634 5725 5266 798 237 57 28 chr6 186483380 186483498 -2796056 - L1MC/D LINE L1 -874 5272 5159 1699 148 68 4 chr6 186483498 186483776 -2795778 - AluJb SINE Alu -16 296 1 798 237 57 28 chr6 186483776 186484455 -2795099 - L1MC/D LINE L1 -987 5159 4281 1957 141 14 0 chr6 186484455 186484773 -2794781 + AluSx SINE Alu 1 312 0 798 237 57 28 chr6 186484773 186485208 -2794346 - L1MC/D LINE L1 -1865 4281 3860 1555 176 78 12 chr6 186485212 186485833 -2793721 + Charlie1 DNA MER1_type 2045 2761 0 487 213 61 15 chr6 186486141 186486395 -2793159 + MER33 DNA MER1_type 31 355 -8 1687 246 110 16 chr6 186486396 186487041 -2792513 - L1MC4 LINE L1 -126 7916 7211 505 316 134 18 chr6 186488162 186488437 -2791117 + HAL1 LINE L1 1601 1907 -600 2249 97 0 7 chr6 186488460 186488758 -2790796 + AluSg SINE Alu 1 296 -14 327 25 0 0 chr6 186490446 186490486 -2789068 + (TG)n Simple_repeat Simple_repeat 2 41 0 287 355 138 0 chr6 186490784 186490987 -2788567 + L3 LINE CR1 1332 1562 -15 335 250 57 92 chr6 186491031 186491259 -2788295 - L1MC5 LINE L1 -44 7917 7698 598 305 105 55 chr6 186491316 186491987 -2787567 + L2 LINE L2 2526 3234 -79 205 292 28 28 chr6 186492514 186492586 -2786968 + L2 LINE L2 3240 3311 -2 233 336 91 18 chr6 186494033 186494143 -2785411 - MIR3 SINE MIR -89 119 2 2809 244 31 23 chr6 186494388 186495293 -2784261 + L1M4 LINE L1 3240 4151 -1995 252 246 0 0 chr6 186495297 186495366 -2784188 + (CA)n Simple_repeat Simple_repeat 2 70 0 180 0 0 0 chr6 186496211 186496231 -2783323 + (TTTTTG)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr6 186496349 186496371 -2783183 + AT_rich Low_complexity Low_complexity 1 22 0 405 269 40 13 chr6 186496488 186496637 -2782917 - Zaphod DNA AcHobo -129 3902 3750 319 279 0 0 chr6 186496653 186496732 -2782822 - Zaphod DNA AcHobo -2716 1315 1237 430 169 145 71 chr6 186496781 186497160 -2782394 - Zaphod DNA AcHobo -2888 1143 737 284 280 127 55 chr6 186547227 186547515 -2732039 + L1M4 LINE L1 4165 4494 -1652 5002 46 41 3 chr6 186547515 186548101 -2731453 - LTR14B LTR ERVK 0 608 1 284 280 127 55 chr6 186548101 186548230 -2731324 + L1M4 LINE L1 4494 4612 -1534 1958 129 7 7 chr6 186548628 186548915 -2730639 + AluSq SINE Alu 1 287 -26 233 280 0 43 chr6 186548935 186549028 -2730526 + L1M4 LINE L1 5039 5127 -1019 545 312 77 13 chr6 186549370 186549668 -2729886 - L1MEd LINE L1 -4869 1250 934 511 331 27 39 chr6 186549811 186550068 -2729486 - L1MEd LINE L1 -5410 709 456 240 176 39 0 chr6 186550520 186550571 -2728983 + MLT1K LTR MaLR 511 563 -25 668 255 116 5 chr6 186551547 186551763 -2727791 - MIR SINE MIR -10 252 13 1682 192 71 6 chr6 186552065 186552404 -2727150 + MLT1A1 LTR MaLR 1 361 -4 23 0 0 0 chr6 186552708 186552731 -2726823 + AT_rich Low_complexity Low_complexity 1 23 0 543 105 53 0 chr6 186552940 186553016 -2726538 - MADE1 DNA Mariner 0 80 1 1020 207 66 121 chr6 186553311 186553707 -2725847 + MLT1A2 LTR MaLR 1 374 0 2680 238 119 82 chr6 186553707 186555029 -2724525 + MLT1B-int LTR MaLR 1 1370 -1 1303 229 43 32 chr6 186555043 186555415 -2724139 + MLT1B LTR MaLR 15 390 0 2157 130 3 18 chr6 186555501 186555826 -2723728 + THE1C LTR MaLR 1 380 -52 10398 112 11 35 chr6 186555826 186557386 -2722168 + THE1C-int LTR MaLR 57 1580 0 901 134 0 0 chr6 186557386 186557513 -2722041 + THE1C LTR MaLR 1 127 -248 2886 102 8 0 chr6 186557513 186557884 -2721670 + THE1C LTR MaLR 1 374 -1 3873 179 57 3 chr6 186558104 186558857 -2720697 - L1MB3 LINE L1 -2 6417 5624 2332 102 3 6 chr6 186558857 186559171 -2720383 - AluSp SINE Alu 0 313 1 1069 75 0 15 chr6 186559173 186559307 -2720247 - AluSq/x SINE Alu -181 132 1 4762 216 34 62 chr6 186559307 186560739 -2718815 - L1MB3 LINE L1 -750 5632 4241 614 230 110 172 chr6 186560740 186561158 -2718396 + MSTC LTR MaLR 1 392 -4 10786 200 57 59 chr6 186561167 186561709 -2717845 - L1MB3 LINE L1 -2143 4239 3698 1982 100 56 0 chr6 186561709 186561978 -2717576 - AluSx SINE Alu -28 284 1 10786 200 57 59 chr6 186561978 186563231 -2716323 - L1MB3 LINE L1 -2684 3698 2444 1212 257 8 4 chr6 186563231 186563468 -2716086 - MER8 DNA MER2_type 0 239 2 10786 200 57 59 chr6 186563468 186565331 -2714223 - L1MB3 LINE L1 -3938 2444 582 1640 158 15 0 chr6 186565331 186565596 -2713958 - AluSx SINE Alu -2 310 42 10786 200 57 59 chr6 186565596 186566126 -2713428 - L1MB3 LINE L1 -5800 582 53 315 0 0 0 chr6 186566137 186566172 -2713382 + (TCC)n Simple_repeat Simple_repeat 1 35 0 190 293 35 0 chr6 186567474 186567532 -2712022 - MER5A DNA MER1_type -63 126 67 25 31 0 0 chr6 186568193 186568225 -2711329 + AT_rich Low_complexity Low_complexity 1 32 0 1907 247 86 24 chr6 186572136 186572645 -2706909 + L1ME2 LINE L1 5158 5731 -433 3353 118 85 25 chr6 186572645 186573211 -2706343 - MER4A LTR ERV1 0 600 1 1907 247 86 24 chr6 186573211 186573541 -2706013 + L1ME2 LINE L1 5731 6039 -125 316 222 37 0 chr6 186573727 186573808 -2705746 - L2 LINE L2 0 3313 3230 24 53 0 0 chr6 186574126 186574164 -2705390 + AT_rich Low_complexity Low_complexity 1 38 0 258 32 0 0 chr6 186575722 186575753 -2703801 + (CA)n Simple_repeat Simple_repeat 2 32 0 246 81 0 0 chr6 186575754 186575791 -2703763 + (GA)n Simple_repeat Simple_repeat 2 38 0 668 116 0 0 chr6 186575943 186576029 -2703525 + AluS SINE Alu 2 87 -225 428 301 84 0 chr6 186578560 186578703 -2700851 - MIR SINE MIR 0 262 108 433 254 9 0 chr6 186579114 186579224 -2700330 - MIR SINE MIR -29 233 123 201 162 0 0 chr6 186579447 186579484 -2700070 + A-rich Low_complexity Low_complexity 1 37 0 1609 197 16 3 chr6 186582250 186582565 -2696989 - MER65C LTR ERV1 0 461 143 2095 243 93 61 chr6 186583372 186585522 -2694032 - MER65-int LTR ERV1 -698 5020 2468 2672 59 0 0 chr6 186585609 186585915 -2693639 + AluY SINE Alu 1 306 -5 447 226 99 50 chr6 186585931 186585979 -2693575 - MER65-int LTR ERV1 -2866 3732 3688 1386 107 33 92 chr6 186585979 186586251 -2693303 + L1PA16 LINE L1 5910 6165 -1 447 226 99 50 chr6 186586251 186586383 -2693171 - MER65-int LTR ERV1 -2910 3688 3543 2733 228 78 58 chr6 186586679 186588234 -2691320 - MER65-int LTR ERV1 -2377 2494 1507 9625 101 15 11 chr6 186588256 186589570 -2689984 - THE1-int LTR MaLR 0 1580 261 3425 85 81 2 chr6 186589568 186590096 -2689458 + L1P LINE L1 4622 5191 -955 * 8378 50 8 1 chr6 186590139 186591098 -2688456 - LTR5 LTR ERVK -3 966 1 207 139 0 0 chr6 186591114 186591150 -2688404 + L2 LINE L2 1977 2012 -1302 1430 268 28 22 chr6 186591154 186591675 -2687879 - L1MEc LINE L1 -3569 2646 2162 204 179 0 0 chr6 186591687 186591726 -2687828 + (TA)n Simple_repeat Simple_repeat 2 40 0 32089 102 17 19 chr6 186591763 186598170 -2681384 - L1PA7 LINE L1 -4 6465 1 728 230 91 38 chr6 186598190 186598477 -2681077 - MER69 DNA AcHobo 0 2526 2225 5694 94 68 50 chr6 186598500 186599646 -2679908 - MER11A LTR ERVK 0 1266 1 871 297 106 3 chr6 186599647 186599940 -2679614 - MER69 DNA AcHobo -800 426 104 318 341 0 42 chr6 186600223 186600390 -2679164 - L2 LINE L2 0 3313 3154 556 272 191 13 chr6 186600635 186601395 -2678159 + L1MEc LINE L1 1914 2766 -3449 34890 33 1 0 chr6 186601404 186606328 -2673226 + L1PA4 LINE L1 1228 6153 -2 556 216 43 58 chr6 186606350 186606558 -2672996 + L1MEc LINE L1 2763 2967 -3248 189 0 0 0 chr6 186607049 186607070 -2672484 + (TG)n Simple_repeat Simple_repeat 2 22 0 316 294 55 0 chr6 186607326 186607435 -2672119 - MIR SINE MIR -80 182 68 270 106 0 0 chr6 186610373 186610420 -2669134 + (GA)n Simple_repeat Simple_repeat 1 47 0 1063 177 42 100 chr6 186610769 186610857 -2668697 + MLT1B LTR MaLR 1 93 -281 3101 175 21 2 chr6 186610857 186611427 -2668127 - L1PA16 LINE L1 0 6166 5586 1063 177 42 100 chr6 186611427 186611713 -2667841 + MLT1B LTR MaLR 93 344 -30 232 233 70 0 chr6 186614630 186614716 -2664838 - L1MA7 LINE L1 -218 6073 5982 887 171 12 11 chr6 186614731 186614928 -2664626 + L1MA7 LINE L1 6104 6291 0 581 42 87 25 chr6 186615595 186616006 -2663548 + (CA)n Simple_repeat Simple_repeat 1 436 0 609 44 93 15 chr6 186616047 186616753 -2662801 + (CA)n Simple_repeat Simple_repeat 1 761 0 2116 105 9 12 chr6 186617146 186617471 -2662083 + L1PB1 LINE L1 5826 6149 -2 189 0 0 0 chr6 186617499 186617520 -2662034 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2037 276 35 11 chr6 186618110 186618855 -2660699 - L1ME3 LINE L1 -139 6023 5261 352 243 64 14 chr6 186618870 186619010 -2660544 - L1ME3 LINE L1 -940 5206 5060 1805 218 82 2 chr6 186621755 186622158 -2657396 - MLT2C2 LTR ERVL -1 463 29 27 0 0 0 chr6 186622231 186622258 -2657296 + AT_rich Low_complexity Low_complexity 1 27 0 202 344 100 8 chr6 186623050 186623291 -2656263 + L2 LINE L2 2015 2277 -1037 504 185 0 0 chr6 186624028 186624136 -2655418 + (TG)n Simple_repeat Simple_repeat 2 109 0 1253 109 22 0 chr6 186625229 186625412 -2654142 + L1PA8 LINE L1 5985 6171 -1 287 179 39 64 chr6 186625692 186625770 -2653784 + MER4-int LTR ERV1 1087 1162 -5436 809 126 13 13 chr6 186625771 186625930 -2653624 + (TG)n Simple_repeat Simple_repeat 2 160 0 886 235 132 38 chr6 186625933 186626273 -2653281 - MLT1A2 LTR MaLR -2 372 1 23 54 0 0 chr6 186626393 186626430 -2653124 + AT_rich Low_complexity Low_complexity 1 37 0 223 191 32 32 chr6 186626543 186626606 -2652948 + (TATG)n Simple_repeat Simple_repeat 3 65 0 1599 297 147 47 chr6 186626944 186627347 -2652207 - HAL1 LINE L1 -787 1720 1359 1946 142 71 6 chr6 186627347 186627699 -2651855 + THE1C LTR MaLR 1 375 0 1599 297 147 47 chr6 186627699 186628851 -2650703 - HAL1 LINE L1 -1148 1359 10 325 249 10 17 chr6 186629135 186629449 -2650105 + (CA)n Simple_repeat Simple_repeat 1 311 0 362 261 9 21 chr6 186629465 186629704 -2649850 + (CA)n Simple_repeat Simple_repeat 1 235 0 393 286 46 64 chr6 186630473 186630648 -2648906 + MIR3 SINE MIR 11 187 -21 2727 199 65 12 chr6 186631124 186631783 -2647771 + LTR34 LTR ERV1 2 695 -4 2306 174 32 2 chr6 186633197 186633628 -2645926 + LTR34 LTR ERV1 1 444 -255 2990 168 48 34 chr6 186633632 186634257 -2645297 - LTR27 LTR ERV1 0 636 3 8469 133 11 13 chr6 186634266 186635839 -2643715 - LTR27-int LTR ERV1 -8 6934 2714 2519 117 0 0 chr6 186635835 186636177 -2643377 - LTR27-int LTR ERV1 -4978 2559 2218 * 3902 189 38 29 chr6 186636154 186637672 -2641882 - HUERS-P2 LTR ERV1 -382 4835 283 1702 213 13 124 chr6 186637745 186638300 -2641254 - HUERS-P2 LTR ERV1 -2520 568 76 2712 193 47 26 chr6 186638464 186639085 -2640469 - LTR27 LTR ERV1 0 636 3 938 221 52 16 chr6 186639085 186639334 -2640220 + LTR34 LTR ERV1 442 699 0 5454 157 14 19 chr6 186643192 186644127 -2635427 - Ricksha DNA DNA -496 2750 1821 1321 113 152 55 chr6 186644125 186644382 -2635172 - Ricksha DNA DNA -2957 289 8 * 575 309 146 42 chr6 186644528 186645002 -2634552 - L1M4 LINE L1 -893 5253 4830 964 179 0 12 chr6 186645002 186645170 -2634384 - FRAM SINE Alu 0 166 1 575 309 146 42 chr6 186645170 186645503 -2634051 - L1M4 LINE L1 -1316 4830 4329 227 229 0 33 chr6 186645796 186645857 -2633697 - L1M4 LINE L1 -2197 3949 3891 624 130 81 0 chr6 186646053 186646176 -2633378 - L1MA5 LINE L1 -2 6298 6166 243 256 35 35 chr6 186646423 186646509 -2633045 - L1MEc LINE L1 -6292 104 19 189 107 0 0 chr6 186647002 186647030 -2632524 + (CA)n Simple_repeat Simple_repeat 1 28 0 3346 151 22 6 chr6 186647277 186647821 -2631733 - L1PA16 LINE L1 -9 6157 5605 1992 146 0 0 chr6 186647909 186648204 -2631350 - AluSx SINE Alu -17 295 1 596 243 61 114 chr6 186648780 186649269 -2630285 - MLT1F1 LTR MaLR 0 567 105 1301 239 42 22 chr6 186652455 186652811 -2626743 - L1MB5 LINE L1 0 6174 5812 1595 156 11 3 chr6 186652824 186653106 -2626448 - L1MB3 LINE L1 -5 6178 5895 282 225 65 104 chr6 186653229 186653460 -2626094 + L1M4 LINE L1 2933 3154 -2992 1483 270 127 37 chr6 186653461 186654113 -2625441 - MER50 LTR ERV1 -23 711 1 259 280 30 16 chr6 186654638 186654762 -2624792 + L1MC3 LINE L1 6708 6891 -964 245 185 37 19 chr6 186655559 186655613 -2623941 + L1M2a LINE L1 367 421 -6747 1319 188 19 33 chr6 186657419 186657690 -2621864 + AluJb SINE Alu 13 279 -33 225 271 9 28 chr6 186658523 186658630 -2620924 + L1ME3 LINE L1 792 896 -5500 335 324 90 55 chr6 186658646 186658936 -2620618 + L1ME3 LINE L1 932 1231 -4987 779 292 85 33 chr6 186658987 186659821 -2619733 + L1ME3 LINE L1 1273 2192 -4060 909 291 118 6 chr6 186659848 186660332 -2619222 + L1ME3 LINE L1 2238 2775 -3440 511 255 146 26 chr6 186660333 186660710 -2618844 + L1ME3 LINE L1 2846 3267 -2948 1510 269 62 49 chr6 186660787 186661483 -2618071 + L1ME3 LINE L1 5501 6205 -26 356 332 80 25 chr6 186661501 186661857 -2617697 + L2 LINE L2 2701 3068 -245 220 317 67 0 chr6 186661888 186661992 -2617562 + L2 LINE L2 3202 3312 -1 287 267 117 25 chr6 186662067 186662187 -2617367 + L2 LINE L2 3182 3312 -1 361 197 0 26 chr6 186662965 186663041 -2616513 - AluJ/FRAM SINE Alu -1 301 228 2027 124 13 3 chr6 186663766 186664073 -2615481 - AluSx SINE Alu -2 310 1 500 272 23 29 chr6 186665532 186665705 -2613849 + MER77 LTR ERV1 425 596 -9 489 245 135 50 chr6 186665782 186666106 -2613448 + L2 LINE L2 2686 3032 -281 2552 30 0 0 chr6 186667274 186667570 -2611984 - AluY SINE Alu -15 296 1 691 226 90 0 chr6 186673537 186673692 -2605862 - MER5A DNA MER1_type -12 177 9 375 330 84 21 chr6 186673811 186674050 -2605504 - MLT1J2 LTR MaLR -119 331 78 340 296 26 0 chr6 186674190 186674305 -2605249 - L2 LINE L2 -774 2540 2423 271 293 85 0 chr6 186674299 186674405 -2605149 + L2 LINE L2 3193 3307 -6 * 1465 238 68 8 chr6 186674817 186675187 -2604367 + MER65C LTR ERV1 70 461 0 682 267 50 8 chr6 186675908 186676215 -2603339 + MER34 LTR ERV1 34 380 -162 1973 151 53 34 chr6 186676237 186676594 -2602960 + THE1B LTR MaLR 1 364 0 1754 61 3 161 chr6 186676594 186676924 -2602630 + THE1B-int LTR MaLR 1 278 -1302 7055 68 16 0 chr6 186676935 186677950 -2601604 - L1PA8 LINE L1 -1 6171 5143 291 292 0 14 chr6 186878301 186878373 -2401181 + MIR SINE MIR 6 76 -186 550 238 80 0 chr6 186879108 186879259 -2400295 - MER103 DNA DNA -2 164 2 3636 160 38 14 chr6 186879608 186880264 -2399290 - L1MC1 LINE L1 0 6333 5662 252 173 0 0 chr6 186881244 186881303 -2398251 - Charlie5 DNA MER1_type -2489 123 65 1899 158 75 3 chr6 186881887 186882247 -2397307 - MLT1B LTR MaLR -4 386 1 407 306 70 0 chr6 186884417 186884574 -2394980 - MIR SINE MIR -17 245 78 404 282 8 17 chr6 186884605 186884722 -2394832 - MER5A DNA MER1_type -65 124 9 927 162 103 34 chr6 186885834 186886038 -2393516 - L1MB8 LINE L1 -67 6111 5894 1042 298 32 9 chr6 186886038 186886611 -2392943 - L1M4c LINE L1 -4415 2723 1983 363 269 0 0 chr6 186886628 186886900 -2392654 + (TG)n Simple_repeat Simple_repeat 1 272 0 4864 224 119 30 chr6 186886909 186888689 -2390865 - L1M4c LINE L1 -4890 1965 12 781 215 25 12 chr6 186888698 186888861 -2390693 + MER58A DNA MER1_type 42 206 -18 829 121 53 0 chr6 186889039 186889171 -2390383 + FLAM_C SINE Alu 1 139 -4 490 239 169 109 chr6 186889349 186889734 -2389820 - LTR16C LTR ERVL -15 476 69 190 254 79 16 chr6 186889786 186889849 -2389705 - L2 LINE L2 -327 2986 2920 188 304 114 0 chr6 186890080 186890159 -2389395 - MIR SINE MIR -64 144 57 297 278 98 38 chr6 186890445 186890578 -2388976 + L2 LINE L2 2977 3117 -155 208 257 18 0 chr6 186891020 186891133 -2388421 + (TGGA)n Simple_repeat Simple_repeat 1 115 0 309 186 0 0 chr6 186891219 186891289 -2388265 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 333 283 83 21 chr6 186891295 186891440 -2388114 + MLT1K LTR MaLR 420 573 -15 242 314 20 10 chr6 186892494 186892596 -2386958 + MIR3 SINE MIR 69 171 -37 1702 135 29 4 chr6 186893148 186893477 -2386077 + AluSx SINE Alu 1 336 0 245 286 12 36 chr6 186893607 186893691 -2385863 + GA-rich Low_complexity Low_complexity 6 87 0 226 312 24 8 chr6 186895202 186895327 -2384227 + HAL1 LINE L1 636 762 -1745 1088 264 144 44 chr6 186895366 186895780 -2383774 + HAL1 LINE L1 877 1248 -1259 1334 241 30 43 chr6 186895780 186896150 -2383404 - MLT1A1 LTR MaLR 0 365 1 1088 264 144 44 chr6 186896150 186896622 -2382932 + HAL1 LINE L1 1248 1852 -655 1772 130 3 14 chr6 186896956 186897264 -2382290 + AluSq SINE Alu 3 307 0 1924 122 4 0 chr6 186898065 186898344 -2381210 - AluSg SINE Alu -30 280 1 1663 157 10 10 chr6 186899087 186899381 -2380173 - AluSx SINE Alu -16 296 3 1672 127 0 12 chr6 186899694 186899953 -2379601 - AluSq SINE Alu -12 301 46 464 151 27 0 chr6 186899953 186900026 -2379528 - AluJ/FLAM SINE Alu -236 76 2 216 0 0 0 chr6 186900232 186900256 -2379298 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1759 149 0 4 chr6 186900257 186900538 -2379016 - AluSq SINE Alu -33 280 1 1646 176 88 16 chr6 186901677 186901995 -2377559 + MSTD LTR MaLR 1 341 -55 676 164 10 24 chr6 186901996 186902203 -2377351 + CT-rich Low_complexity Low_complexity 1 204 0 352 182 0 0 chr6 186902203 186902269 -2377285 + MSTD LTR MaLR 330 395 -1 232 224 122 20 chr6 186902577 186902675 -2376879 - L1MC5 LINE L1 -55 7906 7799 801 200 43 123 chr6 186902752 186903085 -2376469 - L1MC4 LINE L1 -938 7080 6724 1800 76 0 0 chr6 186904804 186905028 -2374526 - AluSq SINE Alu -87 226 3 399 21 0 0 chr6 186905352 186905400 -2374154 + (TG)n Simple_repeat Simple_repeat 2 49 0 1543 201 0 0 chr6 186905401 186905685 -2373869 - AluJb SINE Alu -28 284 1 997 138 0 0 chr6 186906028 186906173 -2373381 - AluJb SINE Alu -38 274 130 562 167 9 65 chr6 186906184 186906292 -2373262 - MER8 DNA MER2_type -134 105 4 602 184 29 0 chr6 186906512 186906615 -2372939 + U6 snRNA snRNA 2 107 0 362 281 22 94 chr6 186906657 186906780 -2372774 - L1MC4 LINE L1 -2118 5690 5589 520 179 65 41 chr6 186906780 186906903 -2372651 + FLAM_C SINE Alu 4 129 -4 362 281 22 94 chr6 186906903 186907003 -2372551 - L1MC4 LINE L1 -2219 5589 5483 2036 116 7 0 chr6 186907065 186907359 -2372195 - AluSg SINE Alu -14 296 1 1333 205 29 29 chr6 186907406 186907713 -2371841 - AluJo SINE Alu -3 309 3 25 51 0 0 chr6 186907783 186907822 -2371732 + AT_rich Low_complexity Low_complexity 1 39 0 357 275 17 17 chr6 186907964 186908084 -2371470 - L1MC4a LINE L1 -1966 5842 5723 1232 225 7 26 chr6 186908122 186908424 -2371130 + AluJo SINE Alu 1 296 -16 650 208 0 0 chr6 186908426 186908546 -2371008 + AluJb SINE Alu 185 304 -8 207 203 47 31 chr6 186908921 186908985 -2370569 + (GGGTG)n Simple_repeat Simple_repeat 1 65 0 257 291 123 62 chr6 186909205 186909384 -2370170 - MIR SINE MIR -64 198 9 6990 114 24 16 chr6 186909439 186910502 -2369052 - MER11C LTR ERVK 0 1071 1 2642 236 79 43 chr6 186910519 186910804 -2368750 - MER21B LTR ERV1 -58 805 532 1681 173 0 10 chr6 186910804 186911110 -2368444 - AluJo SINE Alu -9 303 1 2642 236 79 43 chr6 186911110 186911421 -2368133 - MER21B LTR ERV1 -331 532 174 1858 149 0 7 chr6 186911421 186911716 -2367838 + AluSq SINE Alu 1 293 -20 2642 236 79 43 chr6 186911716 186911878 -2367676 - MER21B LTR ERV1 -689 174 19 309 307 0 0 chr6 186911900 186911975 -2367579 - MER21B LTR ERV1 -773 90 16 1437 216 14 0 chr6 186911975 186912266 -2367288 - AluJo SINE Alu -13 299 5 1501 198 14 59 chr6 186912269 186912627 -2366927 + MLT1D LTR MaLR 162 503 -2 1418 202 14 17 chr6 186912648 186912775 -2366779 + AluJb SINE Alu 10 136 -176 1966 112 31 0 chr6 186912775 186913062 -2366492 + AluSg1 SINE Alu 1 296 -13 1418 202 14 17 chr6 186913062 186913226 -2366328 + AluJb SINE Alu 136 300 -12 1428 263 85 26 chr6 186913233 186913837 -2365717 - L2 LINE L2 -214 3099 2458 697 218 0 0 chr6 186913937 186914070 -2365484 + FLAM_C SINE Alu 1 133 0 27 0 0 0 chr6 186914070 186914097 -2365457 + AT_rich Low_complexity Low_complexity 1 27 0 1274 247 10 7 chr6 186914097 186914393 -2365161 + AluJo SINE Alu 2 298 -4 340 245 11 11 chr6 186914538 186914632 -2364922 + LTR37A LTR ERV1 240 333 -93 2008 143 0 3 chr6 186914843 186915151 -2364403 - AluSq SINE Alu -6 307 1 1438 202 20 20 chr6 186915454 186915756 -2363798 - AluJo SINE Alu -10 302 1 2780 195 37 34 chr6 186915777 186916397 -2363157 - L1MB8 LINE L1 -5 6173 5552 682 180 0 0 chr6 186916397 186916508 -2363046 + FLAM_A SINE Alu 4 114 -19 487 164 8 102 chr6 186916542 186916630 -2362924 - L1ME LINE L1 -577 5589 5505 1491 184 10 10 chr6 186916630 186916923 -2362631 - AluJb SINE Alu -19 293 1 487 164 8 102 chr6 186916923 186916954 -2362600 - L1ME LINE L1 -661 5505 5473 613 193 0 133 chr6 186917013 186917073 -2362481 + AluJo SINE Alu 24 90 -222 285 89 0 0 chr6 186917073 186917118 -2362436 + (TTG)n Simple_repeat Simple_repeat 1 45 0 1743 137 22 4 chr6 186917120 186917390 -2362164 - AluSx SINE Alu -37 275 1 613 193 0 133 chr6 186917390 186917492 -2362062 + AluJo SINE Alu 91 167 -145 1407 161 124 25 chr6 186917502 186917776 -2361778 - AluJo SINE Alu -1 301 1 1273 238 0 14 chr6 186918029 186918323 -2361231 - AluJo SINE Alu -18 294 5 355 201 25 132 chr6 186918324 186918483 -2361071 - MLT1D LTR MaLR -292 213 72 224 269 129 11 chr6 186918547 186918640 -2360914 - L2 LINE L2 -27 3286 3183 247 310 48 61 chr6 186918667 186918896 -2360658 - L2 LINE L2 -211 3061 2836 1536 188 0 16 chr6 186919257 186919565 -2359989 - AluJb SINE Alu -9 303 1 2161 108 3 0 chr6 186919651 186919948 -2359606 - AluSp SINE Alu -15 298 1 537 16 0 0 chr6 186919974 186920036 -2359518 + (TA)n Simple_repeat Simple_repeat 1 62 0 1775 147 0 3 chr6 186920038 186920323 -2359231 - AluJb SINE Alu -18 294 11 2925 129 9 5 chr6 186920688 186921121 -2358433 + MER1A DNA MER1_type 56 490 -39 661 178 17 25 chr6 186921134 186921252 -2358302 - FLAM_C SINE Alu -18 125 9 665 139 28 0 chr6 186921293 186921401 -2358153 + AluJb SINE Alu 194 304 -8 257 394 59 24 chr6 186922078 186922248 -2357306 - MIR SINE MIR -75 187 12 2589 244 47 37 chr6 186922354 186922598 -2356956 - MER21B LTR ERV1 -113 750 510 1485 207 0 7 chr6 186922598 186922902 -2356652 - AluJo SINE Alu -10 302 1 2589 244 47 37 chr6 186922902 186922972 -2356582 - MER21B LTR ERV1 -353 510 442 1464 186 3 49 chr6 186922972 186923279 -2356275 + AluJb SINE Alu 2 294 -18 2589 244 47 37 chr6 186923279 186923688 -2355866 - MER21B LTR ERV1 -421 442 19 351 212 10 91 chr6 186923686 186923785 -2355769 - MER21B LTR ERV1 -757 106 16 * 990 186 0 119 chr6 186923785 186924070 -2355484 - AluJb SINE Alu -13 299 49 461 241 0 0 chr6 186924070 186924157 -2355397 - AluJo/FLAM SINE Alu -187 125 39 2465 145 64 19 chr6 186924442 186924862 -2354692 + MER1A DNA MER1_type 1 439 -90 644 236 57 6 chr6 186925116 186925273 -2354281 - AluJo SINE Alu -139 173 9 958 197 0 5 chr6 186925851 186926039 -2353515 - AluJb SINE Alu -9 303 117 410 216 39 49 chr6 186926039 186926141 -2353413 - MER8 DNA MER2_type -136 103 3 1570 173 0 13 chr6 186926252 186926552 -2353002 + AluJo SINE Alu 1 296 -16 448 234 7 71 chr6 186926788 186926929 -2352625 + AluJo SINE Alu 11 142 -170 263 256 12 24 chr6 186926929 186927011 -2352543 - L1ME LINE L1 -558 5563 5483 1329 194 42 11 chr6 186927145 186927429 -2352125 - AluJb SINE Alu -19 293 1 408 196 0 135 chr6 186927432 186927580 -2351974 + LTR41 LTR ERVL 640 767 -6 2418 145 64 21 chr6 186927851 186928272 -2351282 + MER1A DNA MER1_type 1 439 -90 644 236 57 6 chr6 186928525 186928682 -2350872 - AluJo SINE Alu -139 173 9 991 192 0 5 chr6 186929260 186929453 -2350101 - AluJb SINE Alu -4 308 117 427 206 39 49 chr6 186929453 186929555 -2349999 - MER8 DNA MER2_type -136 103 3 1524 180 0 13 chr6 186929666 186929966 -2349588 + AluJo SINE Alu 1 296 -16 463 227 7 71 chr6 186930202 186930343 -2349211 + AluJo SINE Alu 11 142 -170 270 264 11 22 chr6 186930343 186930434 -2349120 - L1ME LINE L1 -558 5563 5474 1273 204 42 11 chr6 186930559 186930843 -2348711 - AluJb SINE Alu -19 293 1 395 203 0 135 chr6 186930846 186930994 -2348560 + LTR41 LTR ERVL 640 767 -6 2454 141 67 19 chr6 186931265 186931684 -2347870 + MER1A DNA MER1_type 1 439 -90 303 256 103 103 chr6 186934835 186935320 -2344234 - L1M2 LINE L1 -5564 1285 801 269 263 17 29 chr6 186935873 186936048 -2343506 + (TG)n Simple_repeat Simple_repeat 2 174 0 221 249 17 45 chr6 186936222 186936399 -2343155 + (TG)n Simple_repeat Simple_repeat 2 173 0 219 256 12 38 chr6 186936508 186936668 -2342886 + (TG)n Simple_repeat Simple_repeat 2 157 0 212 249 17 45 chr6 186936737 186936914 -2342640 + (TG)n Simple_repeat Simple_repeat 2 173 0 1367 192 0 11 chr6 186937198 186937464 -2342090 + AluJo SINE Alu 30 292 -20 36 62 0 0 chr6 186937464 186937528 -2342026 + AT_rich Low_complexity Low_complexity 1 64 0 2202 97 0 0 chr6 186937708 186938008 -2341546 + AluSq SINE Alu 1 300 -13 1988 123 7 3 chr6 186939312 186939612 -2339942 + AluSq SINE Alu 1 301 -12 3968 107 30 50 chr6 186940619 186941276 -2338278 + LTR9B LTR ERV1 1 644 0 618 234 76 35 chr6 186941377 186941548 -2338006 + MLT1K LTR MaLR 395 572 -16 265 401 39 22 chr6 186941693 186941875 -2337679 - MER5A DNA MER1_type -3 186 2 300 308 25 33 chr6 186942198 186942318 -2337236 - MIR SINE MIR -124 138 20 4863 96 43 34 chr6 186942560 186942909 -2336645 + MER4E LTR ERV1 1 345 -434 2136 107 0 7 chr6 186942909 186943209 -2336345 - AluSg SINE Alu -12 298 1 4863 96 43 34 chr6 186943209 186943631 -2335923 + MER4E LTR ERV1 345 779 0 221 196 217 43 chr6 186943802 186943894 -2335660 - L2 LINE L2 -3 3310 3203 412 289 180 28 chr6 186944470 186944681 -2334873 - L1MC/D LINE L1 -438 5683 5532 351 293 71 37 chr6 186944847 186945019 -2334535 - MIR SINE MIR -74 188 13 1825 223 37 41 chr6 186945184 186945647 -2333907 + MLT1E3 LTR MaLR 161 621 -3 879 188 0 6 chr6 186945789 186945954 -2333600 + FRAM SINE Alu 1 161 -15 367 286 0 0 chr6 186947198 186947289 -2332265 + MIR SINE MIR 64 154 -108 593 229 40 34 chr6 186947514 186947689 -2331865 - MER5B DNA MER1_type 0 178 3 396 0 0 0 chr6 186948258 186948302 -2331252 + (TG)n Simple_repeat Simple_repeat 2 45 0 670 206 174 0 chr6 186948877 186949032 -2330522 + L2 LINE L2 3118 3299 -14 555 135 0 0 chr6 186949036 186949132 -2330422 + (GGGA)n Simple_repeat Simple_repeat 4 99 0 220 311 193 25 chr6 186949132 186949293 -2330261 + MIR SINE MIR 20 207 -55 1330 234 56 36 chr6 186949763 186950208 -2329346 - LTR37B LTR ERV1 0 468 15 2035 122 0 3 chr6 186950209 186950503 -2329051 - AluSq SINE Alu -20 293 1 425 74 0 0 chr6 186951119 186951173 -2328381 - Alu SINE Alu -15 297 244 520 114 49 154 chr6 186951186 186951244 -2328310 + MSTA LTR MaLR 319 359 -69 1634 120 130 0 chr6 186951244 186951399 -2328155 - AluJb SINE Alu 0 312 179 324 0 0 0 chr6 186951399 186951435 -2328119 + (TG)n Simple_repeat Simple_repeat 2 37 0 1634 120 130 0 chr6 186951435 186951555 -2327999 - AluJb SINE Alu -133 179 1 520 114 49 154 chr6 186951555 186951619 -2327935 + MSTA LTR MaLR 359 428 0 210 267 123 96 chr6 186951619 186951765 -2327789 + MIR SINE MIR 107 256 -6 349 248 92 35 chr6 186952002 186952143 -2327411 + L2 LINE L2 3123 3271 -1 324 246 42 70 chr6 186952826 186952968 -2326586 - MIR SINE MIR -78 184 47 520 252 61 20 chr6 186954132 186954279 -2325275 - MIR SINE MIR -64 198 46 3590 172 28 68 chr6 186954286 186954600 -2324954 - LTR39 LTR ERV1 -1 782 457 1940 151 0 0 chr6 186954600 186954899 -2324655 + AluSx SINE Alu 1 299 -13 3590 172 28 68 chr6 186954899 186955202 -2324352 - LTR39 LTR ERV1 -326 457 199 953 42 17 0 chr6 186955202 186955322 -2324232 - L1PA4 LINE L1 0 6155 6034 3590 172 28 68 chr6 186955322 186955466 -2324088 - LTR39 LTR ERV1 -584 199 51 542 282 139 23 chr6 186955957 186956216 -2323338 - L2 LINE L2 -11 3302 3014 1989 96 0 21 chr6 186956478 186956760 -2322794 + AluSg SINE Alu 1 276 -34 185 0 40 0 chr6 186956760 186956785 -2322769 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 267 355 0 11 chr6 186956789 186956882 -2322672 + LTR33 LTR ERVL 66 157 -364 462 234 125 0 chr6 186956977 186957105 -2322449 + LTR33 LTR ERVL 378 521 0 706 265 30 68 chr6 186957398 186957632 -2321922 + MIR SINE MIR 28 252 -10 2011 136 0 0 chr6 186958573 186958867 -2320687 - AluSc SINE Alu -15 294 1 485 340 49 29 chr6 186958913 186959219 -2320335 + L2 LINE L2 2564 2875 -439 593 246 47 109 chr6 186959355 186959645 -2319909 - MLT1H LTR MaLR -167 375 109 2158 93 0 31 chr6 186959645 186959966 -2319588 - AluY SINE Alu 0 311 1 593 246 47 109 chr6 186959966 186960012 -2319542 - MLT1H LTR MaLR -433 109 62 183 129 0 0 chr6 186960476 186960507 -2319047 + (CAA)n Simple_repeat Simple_repeat 2 32 0 225 256 158 0 chr6 186960549 186960631 -2318923 - L1ME4a LINE L1 -23 6098 6004 243 254 0 0 chr6 186961949 186962004 -2317550 + (TG)n Simple_repeat Simple_repeat 2 56 0 621 235 142 5 chr6 186962736 186963020 -2316534 + MLT1I LTR MaLR 35 406 -3 261 57 0 0 chr6 186963934 186963969 -2315585 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2017 132 3 6 chr6 186963984 186964295 -2315259 - AluSg SINE Alu 0 310 1 309 260 14 14 chr6 186964621 186964694 -2314860 + L3 LINE CR1 558 630 -947 344 290 181 31 chr6 186965821 186965957 -2313597 + L1M4 LINE L1 2740 2915 -3231 2100 126 7 0 chr6 186965957 186966258 -2313296 + AluSx SINE Alu 1 303 -9 344 290 181 31 chr6 186966258 186966314 -2313240 + L1M4 LINE L1 2915 2961 -3185 1326 201 3 28 chr6 186966315 186966599 -2312955 + AluJo SINE Alu 24 300 -12 329 319 22 33 chr6 186966630 186966730 -2312824 + L1M4 LINE L1 3047 3146 -3000 2008 139 0 0 chr6 186966730 186967031 -2312523 + AluSx SINE Alu 1 301 -11 329 319 22 33 chr6 186967031 186967112 -2312442 + L1M4 LINE L1 3146 3226 -2920 340 298 145 23 chr6 186967613 186967744 -2311810 - MIR SINE MIR -114 148 2 367 292 57 64 chr6 186967752 186967945 -2311609 + L3 LINE CR1 661 853 -724 1950 121 3 0 chr6 186967945 186968257 -2311297 + AluSg SINE Alu 1 310 0 367 292 57 64 chr6 186968257 186968327 -2311227 + L3 LINE CR1 853 922 -655 454 211 105 38 chr6 186968344 186968437 -2311117 - LTR33 LTR ERVL -2 519 434 2116 158 60 26 chr6 186968437 186968586 -2310968 + MSTB1 LTR MaLR 1 144 -288 2122 103 0 3 chr6 186968586 186968878 -2310676 - AluSq SINE Alu -17 296 6 2116 158 60 26 chr6 186968878 186969129 -2310425 + MSTB1 LTR MaLR 144 418 -14 348 24 0 0 chr6 186969129 186969170 -2310384 + (CA)n Simple_repeat Simple_repeat 2 42 0 2116 158 60 26 chr6 186969170 186969186 -2310368 + MSTB1 LTR MaLR 418 432 0 454 211 105 38 chr6 186969186 186969225 -2310329 - LTR33 LTR ERVL -87 434 378 528 272 47 24 chr6 186969308 186969477 -2310077 - LTR33 LTR ERVL -348 173 1 307 304 158 45 chr6 186969488 186969754 -2309800 + L3 LINE CR1 944 1239 -338 2116 188 72 9 chr6 186969807 186970264 -2309290 + Tigger5 DNA MER2_type 1838 2323 0 265 262 105 59 chr6 186970266 186970838 -2308716 + L1M4 LINE L1 2969 3566 -2580 3424 215 100 63 chr6 186970849 186972382 -2307172 + L1M4 LINE L1 471 1947 -4697 1184 51 28 6 chr6 186972382 186972558 -2306996 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3424 215 100 63 chr6 186972558 186974229 -2305325 + L1M4 LINE L1 1947 3752 -2892 880 248 75 59 chr6 186974229 186974546 -2305008 + L1M4 LINE L1 5336 5653 -991 544 267 35 101 chr6 186974559 186975132 -2304422 + L1MC4a LINE L1 6049 6583 -1225 218 230 40 14 chr6 186975175 186975249 -2304305 + (TA)n Simple_repeat Simple_repeat 2 77 0 485 292 61 19 chr6 186975349 186975613 -2303941 + L1MC5 LINE L1 7251 7525 -436 253 254 45 64 chr6 186975725 186975835 -2303719 + L1ME3 LINE L1 5979 6086 -76 23 65 0 16 chr6 186976486 186976519 -2303035 + AT_rich Low_complexity Low_complexity 1 34 -27 396 43 0 0 chr6 186976519 186976566 -2302988 - L1PA6 LINE L1 -8 6146 6100 23 65 0 16 chr6 186976566 186976594 -2302960 + AT_rich Low_complexity Low_complexity 34 61 0 301 374 91 30 chr6 186977507 186977905 -2301649 - L2 LINE L2 -23 3249 2828 25 31 0 0 chr6 186977917 186977949 -2301605 + AT_rich Low_complexity Low_complexity 1 32 0 2213 43 16 1 chr6 186978009 186978307 -2301247 - L1PA5 LINE L1 -4 6150 5851 330 373 60 21 chr6 186978278 186978511 -2301043 - L2 LINE L2 -606 2708 2467 775 191 93 6 chr6 186978760 186978922 -2300632 + AluSp SINE Alu 123 298 -15 738 315 53 32 chr6 186979098 186979533 -2300021 - L1ME3A LINE L1 -219 5951 5508 186 43 0 0 chr6 186979568 186979591 -2299963 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3908 212 27 30 chr6 186979591 186980605 -2298949 - L1 LINE L1 -1449 4697 3687 967 299 63 30 chr6 186980602 186981415 -2298139 - L1ME3A LINE L1 -1969 4177 3338 * 6724 156 29 9 chr6 186981398 186981554 -2298000 - L1MA8 LINE L1 -26 6265 6114 5089 105 18 1 chr6 186981554 186982290 -2297264 + L1MA2 LINE L1 5556 6303 -1 6724 156 29 9 chr6 186982290 186984272 -2295282 - L1MA8 LINE L1 -177 6114 4083 352 329 43 7 chr6 186984272 186984412 -2295142 - L1ME3A LINE L1 -2780 3366 3222 2002 212 76 15 chr6 186984427 186984903 -2294651 + LTR22 LTR ERVK 1 505 -4 6212 182 2 7 chr6 186984943 186985977 -2293577 + L1PA15-16 LINE L1 2 1030 -5819 2535 117 23 5 chr6 186985977 186986392 -2293162 + L1P4 LINE L1 5268 5693 -475 2058 124 0 0 chr6 186986392 186986682 -2292872 + AluSq SINE Alu 1 290 -23 2535 117 23 5 chr6 186986682 186986693 -2292861 + L1P4 LINE L1 5693 5702 -466 427 183 21 54 chr6 186986695 186986788 -2292766 + L1MC4 LINE L1 6614 6703 -1339 495 332 10 31 chr6 186986797 186987086 -2292468 + L1ME3A LINE L1 5643 5925 -245 * 2273 123 16 13 chr6 186986835 186987208 -2292346 + L1PA8 LINE L1 5675 6048 -124 360 224 61 10 chr6 186987187 186987285 -2292269 + L1PA8 LINE L1 5946 6048 -124 * 371 214 61 10 chr6 186987264 186987362 -2292192 + L1PA8 LINE L1 5946 6048 -124 351 204 71 20 chr6 186987341 186987439 -2292115 + L1PA8 LINE L1 5946 6048 -124 * 387 204 61 10 chr6 186987418 186987516 -2292038 + L1PA8 LINE L1 5946 6048 -124 367 206 72 10 chr6 186987495 186987592 -2291962 + L1PA8 LINE L1 5946 6048 -124 * 360 224 61 10 chr6 186987571 186987669 -2291885 + L1PA8 LINE L1 5946 6048 -124 * 360 224 61 10 chr6 186987648 186987746 -2291808 + L1PA8 LINE L1 5946 6048 -124 * 371 214 61 10 chr6 186987725 186987823 -2291731 + L1PA8 LINE L1 5946 6048 -124 352 216 72 10 chr6 186987802 186987899 -2291655 + L1PA8 LINE L1 5946 6048 -124 * 360 224 61 10 chr6 186987878 186987976 -2291578 + L1PA8 LINE L1 5946 6048 -124 * 371 214 61 10 chr6 186987955 186988053 -2291501 + L1PA8 LINE L1 5946 6048 -124 360 224 61 10 chr6 186988032 186988130 -2291424 + L1PA8 LINE L1 5946 6048 -124 * 371 214 61 10 chr6 186988109 186988207 -2291347 + L1PA8 LINE L1 5946 6048 -124 351 204 71 20 chr6 186988186 186988284 -2291270 + L1PA8 LINE L1 5946 6048 -124 * 387 204 61 10 chr6 186988263 186988361 -2291193 + L1PA8 LINE L1 5946 6048 -124 * 402 194 61 10 chr6 186988340 186988438 -2291116 + L1PA8 LINE L1 5946 6048 -124 367 206 72 10 chr6 186988417 186988514 -2291040 + L1PA8 LINE L1 5946 6048 -124 * 360 224 61 10 chr6 186988493 186988591 -2290963 + L1PA8 LINE L1 5946 6048 -124 * 360 224 61 10 chr6 186988570 186988668 -2290886 + L1PA8 LINE L1 5946 6048 -124 * 370 183 73 0 chr6 186988647 186988729 -2290825 + L1PA8 LINE L1 5946 6033 -139 278 191 0 0 chr6 186988724 186988771 -2290783 + L1PA11 LINE L1 5946 5992 -182 * 2185 104 0 0 chr6 186988875 186989173 -2290381 + AluSg1 SINE Alu 1 298 -11 1296 151 40 46 chr6 186989864 186990168 -2289386 + AluSx SINE Alu 1 302 -10 583 165 83 0 chr6 186990296 186990405 -2289149 + MLT1D LTR MaLR 1 118 -387 894 219 93 0 chr6 186990519 186990724 -2288830 + MLT1D LTR MaLR 280 503 -2 2045 134 0 3 chr6 186990756 186991062 -2288492 + AluSx SINE Alu 1 305 -7 1316 171 121 0 chr6 186991239 186991503 -2288051 - AluSg SINE Alu -13 297 2 1919 113 14 3 chr6 186992288 186992590 -2286964 - AluSq SINE Alu 0 305 1 289 118 0 0 chr6 186993450 186993501 -2286053 - AluSp/q SINE Alu -2 301 251 195 239 30 15 chr6 186993771 186993838 -2285716 - MIR SINE MIR -56 152 85 244 266 16 0 chr6 186994187 186994251 -2285303 - MIR SINE MIR -177 85 21 1185 181 0 5 chr6 186995727 186995931 -2283623 + AluSx SINE Alu 1 203 -109 698 132 0 50 chr6 186995932 186996053 -2283501 + AluSq SINE Alu 70 184 -129 372 320 39 6 chr6 186996605 186996786 -2282768 + MER5A DNA MER1_type 3 189 0 288 311 106 15 chr6 186996811 186996943 -2282611 - MER5B DNA MER1_type -26 152 9 369 73 0 0 chr6 186997103 186997158 -2282396 + L1MB4 LINE L1 6126 6180 0 647 261 83 9 chr6 186998869 186999099 -2280455 - ORSL DNA AcHobo -6 269 23 1945 125 28 0 chr6 187001643 187001932 -2277622 + AluSx SINE Alu 1 297 -15 1805 106 86 17 chr6 187007705 187007997 -2271557 - AluSx SINE Alu 0 312 1 190 296 212 22 chr6 187008516 187008695 -2270859 + MIR SINE MIR 33 245 -17 248 323 5 85 chr6 187012630 187012819 -2266735 + L2 LINE L2 2904 3077 -195 239 242 70 16 chr6 187013486 187013614 -2265940 + L1ME LINE L1 5706 5840 -281 27 62 0 0 chr6 187014553 187014601 -2264953 + AT_rich Low_complexity Low_complexity 1 48 0 682 297 36 16 chr6 187014682 187014985 -2264569 + L1ME4a LINE L1 5567 5875 -246 1790 148 33 3 chr6 187015280 187015583 -2263971 - AluSx SINE Alu 0 312 1 2376 52 6 49 chr6 187015940 187016267 -2263287 + AluSq SINE Alu 1 313 0 2238 104 3 0 chr6 187016847 187017156 -2262398 - AluY SINE Alu -1 310 1 243 0 0 0 chr6 187017206 187017233 -2262321 + (CA)n Simple_repeat Simple_repeat 2 28 0 187 313 73 0 chr6 187019450 187019546 -2260008 - MIR SINE MIR -60 148 46 320 317 80 55 chr6 187020153 187020866 -2258688 + L1M2 LINE L1 525 1255 -5594 323 287 0 30 chr6 187020869 187021033 -2258521 + (CCG)n Simple_repeat Simple_repeat 2 160 0 * 435 157 0 111 chr6 187020922 187021120 -2258434 + C-rich Low_complexity Low_complexity 2 177 0 21 0 0 0 chr6 187024463 187024484 -2255070 + AT_rich Low_complexity Low_complexity 1 21 0 328 294 55 0 chr6 187026422 187026531 -2253023 - MIR SINE MIR -31 231 117 265 241 247 0 chr6 187028343 187028539 -2251015 - L2 LINE L2 -20 3252 2992 181 316 38 75 chr6 187029413 187029546 -2250008 - MIR SINE MIR -51 211 84 2069 130 49 6 chr6 187030254 187030600 -2248954 + MER46B DNA MER2_type 1 236 0 190 333 21 32 chr6 187031853 187031946 -2247608 - L2 LINE L2 -47 3266 3175 270 197 39 185 chr6 187032188 187032366 -2247188 - MIR SINE MIR -48 214 63 241 239 123 39 chr6 187033072 187033202 -2246352 + MIR SINE MIR 118 258 -4 249 175 35 35 chr6 187034047 187034104 -2245450 + L1ME4a LINE L1 5575 5631 -490 252 282 40 27 chr6 187034178 187034327 -2245227 + L1ME4a LINE L1 5792 5942 -179 2622 38 0 0 chr6 187034383 187034676 -2244878 + AluY SINE Alu 1 293 -18 1718 155 19 48 chr6 187035423 187035733 -2243821 + AluJb SINE Alu 1 301 -11 269 250 87 39 chr6 187036786 187036890 -2242664 + MIR SINE MIR 16 124 -84 1780 128 13 83 chr6 187036900 187037212 -2242342 - AluJo SINE Alu -16 296 7 219 217 22 0 chr6 187038115 187038161 -2241393 + MIR3 SINE MIR 121 167 -41 1872 188 43 8 chr6 187038380 187038778 -2240776 - Tigger3(Golem) DNA MER2_type -31 2998 2587 389 185 141 0 chr6 187038771 187038863 -2240691 - Tigger3(Golem) DNA MER2_type -338 2691 2587 * 503 184 19 0 chr6 187038856 187038959 -2240595 - Tigger3(Golem) DNA MER2_type -338 2691 2587 * 510 179 19 0 chr6 187038949 187039055 -2240499 - Tigger3(Golem) DNA MER2_type -335 2694 2587 * 3831 199 51 7 chr6 187039048 187039904 -2239650 - Tigger3b DNA MER2_type -337 894 1 997 231 139 17 chr6 187042066 187042477 -2237077 + MLT1C LTR MaLR 1 461 -6 1290 123 11 0 chr6 187044488 187044667 -2234887 - AluSg/x SINE Alu 0 312 132 2434 109 0 0 chr6 187044667 187044979 -2234575 - AluSx SINE Alu 0 312 1 669 262 84 11 chr6 187045149 187045496 -2234058 - MLT1D LTR MaLR -33 472 101 2398 88 0 0 chr6 187047311 187047605 -2231949 - AluSx SINE Alu -18 294 1 2000 142 0 7 chr6 187048997 187049292 -2230262 + AluJb SINE Alu 1 293 -19 1601 123 164 25 chr6 187049460 187049688 -2229866 + MER46B DNA MER2_type 1 162 -2569 2261 147 70 22 chr6 187049688 187050102 -2229452 + Tigger2a DNA MER2_type 1 434 0 1601 123 164 25 chr6 187050102 187050190 -2229364 + MER46B DNA MER2_type 162 236 0 21 36 0 0 chr6 187051475 187051503 -2228051 + AT_rich Low_complexity Low_complexity 1 28 0 1317 275 51 42 chr6 187051872 187052555 -2226999 - L1M4 LINE L1 -2250 3896 3208 3545 179 71 7 chr6 187052566 187053327 -2226227 - L1MC1 LINE L1 -5 6328 5519 1192 269 71 29 chr6 187053347 187053967 -2225587 - L1M4 LINE L1 -2963 3183 2538 684 220 118 21 chr6 187053968 187054154 -2225400 - MER58C DNA MER1_type -11 204 1 456 358 74 18 chr6 187054164 187054449 -2225105 - L1M4 LINE L1 -3605 2541 2241 5708 231 67 48 chr6 187054469 187056433 -2223121 - L1MD1 LINE L1 0 6242 4216 1414 199 67 11 chr6 187056433 187056715 -2222839 - AluJb SINE Alu -10 302 5 5708 231 67 48 chr6 187056715 187057683 -2221871 - L1MD1 LINE L1 -2026 4216 3268 4287 184 30 14 chr6 187057942 187059036 -2220518 + L1MA9 LINE L1 5090 6198 -114 1192 229 98 21 chr6 187059055 187059236 -2220318 - Charlie4a DNA MER1_type -1464 497 331 1242 153 88 0 chr6 187059236 187059452 -2220102 + MER46A DNA MER2_type 2 236 0 1192 229 98 21 chr6 187059452 187059697 -2219857 - Charlie4a DNA MER1_type -1630 331 38 390 304 79 47 chr6 187059705 187060028 -2219526 + L2 LINE L2 2649 3046 -267 196 252 159 37 chr6 187060245 187060352 -2219202 + L2 LINE L2 3138 3257 -15 22 0 0 0 chr6 187060632 187060654 -2218900 + AT_rich Low_complexity Low_complexity 1 22 0 350 328 98 0 chr6 187062067 187062302 -2217252 + L2 LINE L2 1710 1967 -1347 269 304 131 48 chr6 187062889 187063241 -2216313 + L2 LINE L2 2892 3272 0 246 386 9 9 chr6 187063753 187063867 -2215687 + MIR3 SINE MIR 43 156 -52 23 54 0 0 chr6 187066629 187066666 -2212888 + AT_rich Low_complexity Low_complexity 1 37 0 1422 211 133 30 chr6 187067398 187067873 -2211681 + L1MB7 LINE L1 5644 6167 -17 869 236 47 66 chr6 187069807 187070174 -2209380 + MLT1A1 LTR MaLR 1 365 0 218 132 0 0 chr6 187070180 187070218 -2209336 - L2 LINE L2 0 3313 3276 302 344 49 12 chr6 187070573 187070736 -2208818 + MIR3 SINE MIR 19 187 -21 369 128 51 26 chr6 187070767 187070845 -2208709 + L1MA6 LINE L1 6218 6297 -3 1280 229 86 3 chr6 187071298 187071613 -2207941 - MER58B DNA MER1_type 0 341 1 1654 135 116 8 chr6 187074825 187075092 -2204462 + AluSg1 SINE Alu 1 296 -13 2017 150 0 10 chr6 187075881 187076188 -2203366 + AluJo SINE Alu 9 312 0 2228 137 0 0 chr6 187076764 187077064 -2202490 + AluSx SINE Alu 1 300 -12 434 235 0 59 chr6 187077570 187077672 -2201882 + L1MC4 LINE L1 6608 6703 -1339 315 284 0 0 chr6 187077626 187077693 -2201861 - L1MC4 LINE L1 -1339 6703 6637 * 294 201 35 174 chr6 187078560 187078704 -2200850 - MIR SINE MIR -116 146 23 1414 165 32 86 chr6 187079119 187079434 -2200120 + AluJo SINE Alu 1 298 -14 2207 100 28 0 chr6 187079449 187079739 -2199815 - AluSq SINE Alu -15 298 1 231 317 0 0 chr6 187080739 187080919 -2198635 + (CA)n Simple_repeat Simple_repeat 1 180 0 1271 203 17 8 chr6 187082090 187082327 -2197227 - MER8 DNA MER2_type 0 239 1 6538 124 30 14 chr6 187083117 187083916 -2195638 - L1PA11 LINE L1 -1 7611 6826 2286 87 0 20 chr6 187083916 187084216 -2195338 - AluY SINE Alu -17 294 1 6538 124 30 14 chr6 187084216 187085276 -2194278 - L1PA11 LINE L1 -786 6826 5717 13963 198 41 35 chr6 187085279 187089149 -2190405 - L1PA11 LINE L1 -2329 5255 1 246 243 29 0 chr6 187089983 187090053 -2189501 - MIR SINE MIR -77 185 114 405 311 21 37 chr6 187091107 187091297 -2188257 - MER5A DNA MER1_type -1 188 2 973 294 47 7 chr6 187092055 187092351 -2187203 + MER58B DNA MER1_type 25 332 -9 305 248 128 0 chr6 187092451 187092560 -2186994 - L1ME4a LINE L1 -57 6064 5942 1509 190 119 0 chr6 187092702 187093013 -2186541 + MER7A DNA MER2_type 1 346 0 847 158 0 0 chr6 187093403 187093536 -2186018 - FLAM_C SINE Alu 0 133 1 764 183 22 0 chr6 187095066 187095203 -2184351 + MER5A DNA MER1_type 27 166 -23 1270 71 36 0 chr6 187096706 187096874 -2182680 + MLT2A1 LTR ERVL 190 363 -81 29100 104 19 47 chr6 187096920 187099057 -2180497 + L1PA8 LINE L1 6 2201 -4286 2165 109 31 3 chr6 187099057 187099351 -2180203 - AluSg SINE Alu -8 302 1 29100 104 19 47 chr6 187099351 187103818 -2175736 + L1PA8 LINE L1 2201 6487 0 243 0 0 0 chr6 187104283 187104310 -2175244 + (CA)n Simple_repeat Simple_repeat 1 27 0 1687 115 119 8 chr6 187105080 187105340 -2174214 + AluSg1 SINE Alu 9 297 -12 1218 174 159 66 chr6 187105397 187105731 -2173823 - MLT1A1 LTR MaLR 0 365 1 2180 110 0 17 chr6 187106148 187106447 -2173107 - AluSq SINE Alu -19 294 1 323 265 93 7 chr6 187109050 187109201 -2170353 + HAL1 LINE L1 1100 1263 -1244 238 239 60 86 chr6 187110117 187110234 -2169320 + L1MC4 LINE L1 1221 1334 -4871 2030 117 33 77 chr6 187110514 187110941 -2168613 + Tigger3(Golem) DNA MER2_type 2284 2691 -338 406 221 39 0 chr6 187110931 187111035 -2168519 + Tigger3(Golem) DNA MER2_type 2584 2691 -338 * 469 217 19 0 chr6 187111028 187111134 -2168420 + Tigger3(Golem) DNA MER2_type 2588 2695 -334 * 498 194 19 0 chr6 187111124 187111227 -2168327 + Tigger3(Golem) DNA MER2_type 2587 2691 -338 441 204 39 0 chr6 187111220 187111323 -2168231 + Tigger3(Golem) DNA MER2_type 2587 2693 -336 * 1218 171 41 119 chr6 187111362 187111512 -2168042 + MER58B DNA MER1_type 7 167 -2253 2528 58 0 0 chr6 187111512 187111804 -2167750 + AluY SINE Alu 1 292 -19 1859 161 3 19 chr6 187111814 187112130 -2167424 + AluJo SINE Alu 1 311 -1 1218 171 41 119 chr6 187112130 187112330 -2167224 + MER58B DNA MER1_type 176 340 -1 355 227 89 41 chr6 187112360 187112923 -2166631 + L1MC4 LINE L1 1902 6412 -16 336 65 0 0 chr6 187112923 187112969 -2166585 - MADE1 DNA Mariner -34 46 1 2343 87 0 32 chr6 187112989 187113299 -2166255 - AluSq SINE Alu -13 300 1 1410 255 97 16 chr6 187113322 187113992 -2165562 + L1MEd LINE L1 2088 2787 -3428 398 250 9 27 chr6 187117009 187117121 -2162433 + MIR SINE MIR 103 212 -50 1802 124 69 4 chr6 187117183 187117458 -2162096 + AluSx SINE Alu 1 293 -19 205 361 83 30 chr6 187118316 187118449 -2161105 + L2 LINE L2 2486 2625 -689 305 267 69 0 chr6 187118780 187118881 -2160673 + MIR SINE MIR 127 234 -28 2055 110 45 3 chr6 187119182 187119473 -2160081 - AluSq SINE Alu -10 303 1 903 236 33 43 chr6 187121871 187122147 -2157407 + L1ME2 LINE L1 5842 6114 -50 502 210 130 14 chr6 187122050 187122188 -2157366 + L1MA10 LINE L1 6178 6331 -3 * 246 268 113 10 chr6 187122619 187122716 -2156838 - MIR SINE MIR -34 228 122 1429 148 119 29 chr6 187122775 187123052 -2156502 - AluJb SINE Alu -6 306 5 184 228 89 63 chr6 187124426 187124505 -2155049 + L2 LINE L2 3192 3272 0 594 255 54 42 chr6 187125203 187125442 -2154112 - LTR37B LTR ERV1 -222 246 5 1202 160 355 3 chr6 187125806 187126138 -2153416 + MER31B LTR ERV1 2 450 -16 22 35 0 0 chr6 187126389 187126418 -2153136 + AT_rich Low_complexity Low_complexity 1 29 0 222 276 132 0 chr6 187127095 187127171 -2152383 - L2 LINE L2 -19 3294 3209 334 267 56 0 chr6 187127906 187127996 -2151558 - L2 LINE L2 -3 3310 3216 239 238 99 50 chr6 187128275 187128376 -2151178 - MIR SINE MIR -152 110 5 268 346 81 22 chr6 187129436 187129572 -2149982 + MIR SINE MIR 73 216 -46 612 244 24 30 chr6 187130150 187130318 -2149236 - MER69A DNA AcHobo -8 169 3 180 337 114 34 chr6 187131158 187131508 -2148046 + L2 LINE L2 2813 3190 -82 1507 169 74 27 chr6 187133666 187134003 -2145551 + MLT1A1 LTR MaLR 13 365 0 214 265 92 20 chr6 187134008 187134106 -2145448 - L2 LINE L2 -222 3050 2946 852 269 112 48 chr6 187134332 187135316 -2144238 + HAL1 LINE L1 1256 2358 -149 1843 186 0 7 chr6 187135316 187135623 -2143931 + AluJo SINE Alu 1 305 -7 852 269 112 48 chr6 187135623 187135784 -2143770 + HAL1 LINE L1 2358 2507 0 187 339 31 0 chr6 187135910 187135975 -2143579 - L2 LINE L2 -832 2482 2416 2819 80 0 5 chr6 187136417 187136794 -2142760 + THE1C LTR MaLR 1 375 0 9669 115 29 38 chr6 187136794 187138389 -2141165 + THE1C-int LTR MaLR 1 1580 0 2740 77 0 11 chr6 187138391 187138768 -2140786 + THE1C LTR MaLR 3 375 0 538 274 21 11 chr6 187139165 187139355 -2140199 + L1MEc LINE L1 39 230 -6166 788 233 96 71 chr6 187139361 187139811 -2139743 + L1M4 LINE L1 3181 3641 -2505 30 27 0 0 chr6 187142198 187142235 -2137319 + GC_rich Low_complexity Low_complexity 1 37 0 500 142 24 31 chr6 187145101 187145228 -2134326 + GA-rich Low_complexity Low_complexity 1 126 0 316 263 0 0 chr6 187147681 187147761 -2131793 + G-rich Low_complexity Low_complexity 1 80 0 192 152 0 0 chr6 187148331 187148364 -2131190 + CT-rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr6 187148786 187148809 -2130745 + GC_rich Low_complexity Low_complexity 1 23 0 306 299 37 9 chr6 187150726 187150833 -2128721 - MIR SINE MIR -74 134 25 264 59 0 0 chr6 187152021 187152055 -2127499 + (TG)n Simple_repeat Simple_repeat 2 35 0 378 301 72 18 chr6 187152890 187153056 -2126498 + MER5B DNA MER1_type 1 175 -3 264 230 77 12 chr6 187154449 187154572 -2124982 + MIR SINE MIR 58 187 -69 360 0 0 0 chr6 187156937 187156977 -2122577 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 707 266 129 32 chr6 187157423 187157856 -2121698 + L1MC5 LINE L1 7291 7765 -196 182 265 20 88 chr6 187158692 187158794 -2120760 + L2 LINE L2 3155 3249 -64 186 287 161 49 chr6 187159779 187159922 -2119632 + L3b LINE CR1 1310 1468 -115 1308 149 5 19 chr6 187160629 187160837 -2118717 + AluJo SINE Alu 94 298 -14 910 128 28 50 chr6 187161146 187161326 -2118228 + Tigger4(Zombi) DNA MER2_type 363 538 -2193 1951 52 0 0 chr6 187161457 187161686 -2117868 - AluY SINE Alu -11 300 72 271 98 0 0 chr6 187161686 187161727 -2117827 - AluY SINE Alu -261 41 1 1777 173 3 14 chr6 187162634 187162923 -2116631 - AluJo SINE Alu -20 292 7 180 77 0 0 chr6 187162999 187163025 -2116529 + (TG)n Simple_repeat Simple_repeat 1 26 0 252 0 0 0 chr6 187166299 187166327 -2113227 + (T)n Simple_repeat Simple_repeat 1 28 0 191 235 29 44 chr6 187166970 187167038 -2112516 - L2 LINE L2 -15 3257 3191 1841 234 57 22 chr6 187167068 187167556 -2111998 - MLT2B2 LTR ERVL -10 505 1 1915 171 27 0 chr6 187168419 187168712 -2110842 + AluJb SINE Alu 1 301 -11 207 320 222 7 chr6 187168839 187168992 -2110562 + MER5A DNA MER1_type 3 188 -1 883 285 152 8 chr6 187169002 187169489 -2110065 - MLT2F LTR ERVL -3 660 104 2427 122 101 9 chr6 187169577 187170005 -2109549 + LTR24 LTR ERV1 1 467 0 396 200 0 0 chr6 187171635 187171720 -2107834 + GA-rich Low_complexity Low_complexity 1 85 0 186 345 76 42 chr6 187171792 187171911 -2107643 - MIR SINE MIR -67 141 19 339 228 0 0 chr6 187172164 187172221 -2107333 - AluS SINE Alu -244 57 1 207 188 21 0 chr6 187172914 187172962 -2106592 - L2 LINE L2 0 3313 3265 2255 33 0 0 chr6 187172962 187173237 -2106317 + L1PA4 LINE L1 5673 5947 -208 309 345 18 6 chr6 187173553 187173718 -2105836 + L1ME4a LINE L1 5740 5906 -215 356 0 23 0 chr6 187174503 187174547 -2105007 + (CA)n Simple_repeat Simple_repeat 2 46 0 1815 139 39 6 chr6 187174919 187175251 -2104303 - L1MA4A LINE L1 -4 6299 5957 647 216 239 28 chr6 187175513 187175906 -2103648 - L1MC5 LINE L1 -183 7778 7303 1854 179 3 3 chr6 187175970 187176277 -2103277 - AluJb SINE Alu -5 307 1 539 311 35 14 chr6 187178472 187178691 -2100863 + MIR SINE MIR 33 259 -3 14572 190 24 9 chr6 187178877 187179015 -2100539 - L1P4 LINE L1 -347 6522 6388 1916 111 54 0 chr6 187179015 187179294 -2100260 - AluSp SINE Alu -17 296 3 14572 190 24 9 chr6 187179294 187184327 -2095227 - L1P4 LINE L1 -481 6388 1276 1988 163 75 77 chr6 187184323 187184959 -2094595 - L1MDa LINE L1 -3861 2679 2048 * 1508 168 47 85 chr6 187184962 187185003 -2094551 + LTR23 LTR ERV1 9 50 -387 1297 185 3 131 chr6 187185003 187185338 -2094216 - AluJo SINE Alu -10 292 1 1508 168 47 85 chr6 187185338 187185796 -2093758 + LTR23 LTR ERV1 50 437 0 3330 185 50 42 chr6 187185796 187186637 -2092917 - L1MDa LINE L1 -4491 2049 1199 1955 118 50 0 chr6 187186637 187186934 -2092620 - AluSx SINE Alu 0 312 1 3330 185 50 42 chr6 187186934 187187018 -2092536 - L1MDa LINE L1 -5341 1199 1117 487 240 27 60 chr6 187187004 187187187 -2092367 - L1MC/D LINE L1 -2469 5526 5350 * 209 382 0 0 chr6 187187217 187187285 -2092269 + L2 LINE L2 2782 2849 -465 1887 321 157 15 chr6 187187303 187188479 -2091075 + L2 LINE L2 1389 2730 -584 497 319 98 31 chr6 187188675 187189126 -2090428 + L2 LINE L2 2817 3297 -16 1802 184 18 6 chr6 187189929 187190272 -2089282 - L1PB4 LINE L1 -3 6153 5807 22 35 0 0 chr6 187190897 187190926 -2088628 + AT_rich Low_complexity Low_complexity 1 29 0 193 287 84 105 chr6 187190983 187191317 -2088237 + L2 LINE L2 2967 3293 -20 489 252 173 0 chr6 187191405 187191544 -2088010 - MER82 DNA MER2_type -1 652 490 303 167 121 30 chr6 187193510 187193576 -2085978 - MER82 DNA MER2_type -147 506 435 647 115 85 46 chr6 187193579 187193740 -2085814 - AluY SINE Alu 0 311 158 2219 170 41 19 chr6 187193740 187194108 -2085446 - MER82 DNA MER2_type -227 426 47 2327 207 128 27 chr6 187194108 187194764 -2084790 + MER72 LTR ERV1 1 722 0 2219 170 41 19 chr6 187194764 187194806 -2084748 - MER82 DNA MER2_type -606 47 7 446 272 38 90 chr6 187194824 187195177 -2084377 - L1M LINE L1 -759 5387 5094 238 191 21 0 chr6 187200585 187200632 -2078922 + L2 LINE L2 3225 3272 0 180 321 0 0 chr6 187200670 187200723 -2078831 + MIR SINE MIR 74 126 -82 1476 183 283 0 chr6 187201675 187202085 -2077469 + L1MD3 LINE L1 7353 7878 -117 29 47 0 0 chr6 187202205 187202248 -2077306 + AT_rich Low_complexity Low_complexity 1 43 0 722 177 27 14 chr6 187202267 187202414 -2077140 + L1MD3 LINE L1 7837 7985 -10 2134 110 3 0 chr6 187202668 187202969 -2076585 + AluSx SINE Alu 1 302 -10 332 279 11 11 chr6 187203520 187203618 -2075936 - MIR SINE MIR -71 137 40 625 283 143 26 chr6 187203663 187203893 -2075661 + MIR SINE MIR 6 262 0 333 160 40 100 chr6 187204037 187204137 -2075417 - MLT1K LTR MaLR -9 579 486 322 340 89 42 chr6 187204192 187204383 -2075171 - MLT1K LTR MaLR -344 244 45 286 184 0 0 chr6 187206502 187206551 -2073003 + L2 LINE L2 3264 3312 -1 190 406 9 0 chr6 187207094 187207200 -2072354 - L2 LINE L2 -529 2785 2679 1920 114 4 0 chr6 187207259 187207564 -2071990 + AluSg SINE Alu 1 306 0 779 14 89 23 chr6 187207767 187208105 -2071449 + CT-rich Low_complexity Low_complexity 1 530 0 471 284 43 49 chr6 187208618 187208757 -2070797 - MIR SINE MIR -2 260 121 2034 119 3 0 chr6 187208757 187209052 -2070502 + AluSx SINE Alu 6 301 -11 471 284 43 49 chr6 187209052 187209074 -2070480 - MIR SINE MIR -141 121 100 1440 254 36 40 chr6 187209663 187209929 -2069625 - MLT1J1 LTR MaLR -1 445 180 1629 184 57 44 chr6 187209929 187210314 -2069240 - MLT1B LTR MaLR 0 390 1 1440 254 36 40 chr6 187210314 187210492 -2069062 - MLT1J1 LTR MaLR -266 180 3 1790 201 140 32 chr6 187210606 187211113 -2068441 - MLT1F1 LTR MaLR 0 567 6 181 261 200 0 chr6 187211225 187211290 -2068264 + MIR SINE MIR 69 146 -116 258 149 160 0 chr6 187212621 187212715 -2066839 - L1ME4a LINE L1 -22 6099 5991 246 308 103 31 chr6 187213014 187213209 -2066345 - MLT1K LTR MaLR -2 586 378 249 301 163 7 chr6 187213375 187213528 -2066026 - MLT1K LTR MaLR -389 199 23 2039 112 10 0 chr6 187213570 187213864 -2065690 + AluSx SINE Alu 1 297 -15 1659 197 0 0 chr6 187213876 187214186 -2065368 + AluJb SINE Alu 1 310 -2 1599 163 7 33 chr6 187214253 187214560 -2064994 - AluJb SINE Alu -3 309 11 225 0 0 0 chr6 187214640 187214665 -2064889 + (TA)n Simple_repeat Simple_repeat 2 26 0 2258 88 0 0 chr6 187214665 187214960 -2064594 - AluSq SINE Alu -18 295 1 443 261 146 18 chr6 187215066 187215231 -2064323 - L2 LINE L2 0 3313 3128 641 233 79 100 chr6 187215660 187216107 -2063447 - LTR33A LTR ERVL 0 523 88 807 271 64 50 chr6 187216107 187216465 -2063089 + MLT1A1 LTR MaLR 1 363 -2 641 233 79 100 chr6 187216465 187216536 -2063018 - LTR33A LTR ERVL -435 88 17 2017 128 6 13 chr6 187217175 187217487 -2062067 + AluSx SINE Alu 1 310 -2 731 310 58 3 chr6 187217509 187217870 -2061684 - L1MEc LINE L1 -4690 1706 1326 2023 114 0 3 chr6 187217931 187218220 -2061334 - AluSx SINE Alu -21 291 4 3931 167 51 77 chr6 187218222 187219204 -2060350 - L1MC2 LINE L1 -12 6332 5377 449 196 52 0 chr6 187219209 187219306 -2060248 - FRAM SINE Alu -10 166 65 1469 234 55 11 chr6 187219306 187219652 -2059902 - L1MC2 LINE L1 -755 5391 5021 1907 113 3 45 chr6 187219652 187219963 -2059591 - AluSx SINE Alu -14 298 1 1469 234 55 11 chr6 187219963 187220052 -2059502 - L1MC2 LINE L1 -1125 5021 4937 1127 267 131 25 chr6 187220052 187220487 -2059067 - ERVL LTR ERVL -431 5333 4853 220 256 105 23 chr6 187223716 187223802 -2055752 - MIR3 SINE MIR -50 158 66 255 262 47 47 chr6 187224155 187224262 -2055292 - Charlie8 DNA MER1_type -2199 218 112 535 365 55 12 chr6 187224327 187224582 -2054972 + L2 LINE L2 2526 2791 -523 1338 228 73 61 chr6 187224795 187224934 -2054620 + Charlie2 DNA MER1_type 1873 2009 -853 1687 189 0 0 chr6 187224934 187225235 -2054319 - AluJb SINE Alu -11 301 1 1338 228 73 61 chr6 187225235 187225618 -2053936 + Charlie2 DNA MER1_type 2009 2401 -461 1169 208 36 0 chr6 187225625 187225892 -2053662 + Charlie4 DNA MER1_type 32 1768 -193 2545 155 36 16 chr6 187225912 187226351 -2053203 - MER21A LTR ERV1 0 931 484 977 170 79 28 chr6 187226549 187226933 -2052621 - MER21A LTR ERV1 -438 425 2 760 218 78 11 chr6 187226940 187227119 -2052435 + Charlie4 DNA MER1_type 1765 1955 -6 304 235 24 0 chr6 187227165 187227250 -2052304 - L1MB5 LINE L1 0 6174 6088 201 274 36 83 chr6 187227626 187227710 -2051844 - L2 LINE L2 -1 3271 3192 2038 102 0 7 chr6 187228313 187228597 -2050957 + AluSg SINE Alu 1 282 -28 205 40 0 0 chr6 187228597 187228622 -2050932 + (TAAAA)n Simple_repeat Simple_repeat 2 170 0 326 257 7 103 chr6 187229244 187229380 -2050174 + MIR SINE MIR 20 142 -120 309 382 0 6 chr6 187229854 187230011 -2049543 + (CA)n Simple_repeat Simple_repeat 2 157 0 186 319 53 21 chr6 187230920 187231014 -2048540 + MER5B DNA MER1_type 1 97 -81 2688 23 0 0 chr6 187232223 187232529 -2047025 + AluYb8 SINE Alu 1 306 -12 225 256 50 19 chr6 187235075 187235235 -2044319 + (CAGT)n Simple_repeat Simple_repeat 3 167 0 185 185 56 74 chr6 187240294 187240348 -2039206 - L2 LINE L2 0 3313 3261 1482 96 13 48 chr6 187244366 187244596 -2034958 + AluSg/x SINE Alu 87 308 -2 181 54 0 54 chr6 187244610 187244647 -2034907 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1870 135 4 4 chr6 187245026 187245307 -2034247 - AluSx SINE Alu -31 281 1 251 358 8 8 chr6 187245510 187245630 -2033924 + MIR SINE MIR 24 143 -65 356 215 169 31 chr6 187246688 187246818 -2032736 + MER53 DNA DNA 24 171 -18 698 137 6 16 chr6 187248121 187248303 -2031251 + (CA)n Simple_repeat Simple_repeat 1 180 0 276 243 0 0 chr6 187248319 187248488 -2031066 + (CA)n Simple_repeat Simple_repeat 1 169 0 488 204 166 6 chr6 187249309 187249466 -2030088 + MER5A DNA MER1_type 6 187 -2 297 0 0 0 chr6 187250346 187250379 -2029175 + (CA)n Simple_repeat Simple_repeat 2 34 0 277 299 126 24 chr6 187251045 187251212 -2028342 - MIR SINE MIR -18 244 61 392 232 0 0 chr6 187251441 187251540 -2028014 - L1MA4A LINE L1 -23 6280 6182 * 2489 177 42 1 chr6 187251526 187252140 -2027414 + L1M1 LINE L1 5105 5741 -562 2184 96 10 0 chr6 187253058 187253351 -2026203 - AluSp SINE Alu -17 296 1 1229 313 107 31 chr6 187258631 187259415 -2020139 - L1M4 LINE L1 -747 5399 4556 476 298 48 48 chr6 187259818 187260171 -2019383 - L1M4 LINE L1 -2205 3941 3589 322 174 21 89 chr6 187262386 187262576 -2016978 + (CCCCAG)n Simple_repeat Simple_repeat 3 179 0 973 263 61 14 chr6 187264543 187264889 -2014665 + L1M4 LINE L1 2977 3338 -2808 292 290 60 30 chr6 187265689 187265789 -2013765 - L2 LINE L2 -14 3299 3197 1766 135 191 3 chr6 187267286 187267642 -2011912 - MLT1D LTR MaLR -1 504 82 696 83 9 18 chr6 187268150 187268259 -2011295 + MER65A LTR ERV1 338 445 0 5809 216 79 45 chr6 187268343 187270271 -2009283 + MER65A-int LTR ERV1 83 2077 -2794 3093 168 99 89 chr6 187269640 187270654 -2008900 + LTR57-int LTR ERVL 557 1580 -3763 * 1101 220 57 70 chr6 187270570 187271506 -2008048 + MER65A-int LTR ERV1 1516 3448 -2937 * 839 190 42 42 chr6 187271680 187271896 -2007658 + MER65A-int LTR ERV1 3516 3731 -2867 2139 200 115 96 chr6 187271977 187273261 -2006293 + MER65A-int LTR ERV1 2482 5062 -1269 294 188 51 54 chr6 187273275 187273437 -2006117 + MER65A-int LTR ERV1 5181 5392 -939 936 243 69 1 chr6 187273449 187273817 -2005737 + MER65A-int LTR ERV1 3605 4017 -854 2022 225 26 6 chr6 187273844 187274310 -2005244 + MER65A-int LTR ERV1 4397 4871 0 2375 155 39 25 chr6 187274310 187274749 -2004805 + MER65A LTR ERV1 1 445 0 242 344 69 15 chr6 187276272 187276403 -2003151 - L2 LINE L2 -2 3270 3133 1939 136 0 13 chr6 187277473 187277782 -2001772 - AluSx SINE Alu -7 305 1 2525 42 0 19 chr6 187278464 187278774 -2000780 - AluY SINE Alu -9 302 1 1536 232 196 7 chr6 187280174 187280753 -1998801 + Charlie1 DNA MER1_type 2068 2761 0 2450 74 3 0 chr6 187282275 187282585 -1996969 - AluY SINE Alu 0 311 1 941 270 117 31 chr6 187286845 187287485 -1992069 + HAL1 LINE L1 634 1328 -1179 1897 241 210 23 chr6 187288263 187289267 -1990287 + HAL1 LINE L1 1315 2506 -1 7317 184 103 26 chr6 187289339 187291155 -1988399 - L1M4c LINE L1 -4331 2053 4 234 261 6 93 chr6 187291256 187291285 -1988269 - L1M4 LINE L1 -3311 2835 2805 2368 91 0 0 chr6 187291285 187291581 -1987973 - AluSx SINE Alu -16 296 1 234 261 6 93 chr6 187291581 187291712 -1987842 - L1M4 LINE L1 -3341 2805 2689 762 283 253 40 chr6 187292389 187293447 -1986107 - L2 LINE L2 -1539 1775 492 693 240 90 87 chr6 187293447 187293947 -1985607 + MLT1G1 LTR MaLR 1 535 -55 252 178 55 14 chr6 187294031 187294104 -1985450 - L2 LINE L2 -2941 373 298 901 206 182 14 chr6 187295723 187295937 -1983617 + Tigger7 DNA MER2_type 15 264 -2223 1048 116 222 27 chr6 187295940 187296165 -1983389 + Tigger7 DNA MER2_type 2219 2487 0 1256 160 39 17 chr6 187299429 187299660 -1979894 - MER46A DNA MER2_type 0 236 1 254 336 80 18 chr6 187300886 187300999 -1978555 - 5S rRNA rRNA 0 121 2 221 218 0 36 chr6 187303057 187303112 -1976442 - L3 LINE CR1 -1 1576 1524 185 286 0 32 chr6 187303909 187303972 -1975582 + L2 LINE L2 2986 3046 -226 800 147 0 37 chr6 187308150 187308286 -1971268 - FLAM_C SINE Alu -6 137 7 1917 73 0 8 chr6 187308866 187309113 -1970441 + AluSc SINE Alu 56 300 -9 29122 92 14 4 chr6 187309136 187314110 -1965444 + L1PA7 LINE L1 1136 6153 -1 5431 153 51 12 chr6 187314858 187316363 -1963191 + L1MA7 LINE L1 4736 6287 -4 1208 238 111 31 chr6 187316638 187317305 -1962249 + L1M4 LINE L1 3559 4514 -1632 364 303 68 15 chr6 187320246 187320378 -1959176 - MIR3 SINE MIR -40 168 30 269 353 7 20 chr6 187322355 187322505 -1957049 + MIR SINE MIR 1 148 -114 268 184 0 0 chr6 187322513 187322562 -1956992 + L1MA4 LINE L1 6055 6103 -197 1361 152 4 4 chr6 187322578 187322828 -1956726 + L1MA4 LINE L1 6049 6298 -2 240 226 36 117 chr6 187322874 187323011 -1956543 + MIR SINE MIR 136 261 -1 500 193 0 0 chr6 187323858 187323941 -1955613 + AluS SINE Alu 2 84 -229 205 175 0 0 chr6 187325176 187325216 -1954338 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 34 42 0 0 chr6 187327397 187327445 -1952109 + AT_rich Low_complexity Low_complexity 1 48 0 734 131 0 83 chr6 187328116 187328261 -1951293 + FLAM_C SINE Alu 1 133 0 268 275 87 47 chr6 187328332 187328481 -1951073 + HAL1b LINE L1 742 896 -452 466 302 170 37 chr6 187328802 187329496 -1950058 - L2 LINE L2 0 3313 2485 546 300 169 22 chr6 187329510 187329777 -1949777 + L2 LINE L2 900 1205 -2109 1080 284 53 42 chr6 187329992 187330232 -1949322 + MLT1H1 LTR MaLR 1 237 -318 1785 176 42 25 chr6 187330232 187330590 -1948964 - THE1B LTR MaLR 0 364 1 11024 106 19 8 chr6 187330590 187332152 -1947402 - THE1B-int LTR MaLR 0 1580 1 1996 142 42 36 chr6 187332152 187332512 -1947042 - THE1B LTR MaLR 0 364 3 1080 284 53 42 chr6 187332512 187332793 -1946761 + MLT1H1 LTR MaLR 236 530 -25 227 260 10 62 chr6 187332793 187332889 -1946665 + MLT1H1-int LTR MaLR 7 97 -1274 758 174 75 0 chr6 187333192 187333353 -1946201 - LTR64 LTR ERVK 0 558 386 2369 97 52 0 chr6 187333355 187333717 -1945837 + L1PA14 LINE L1 5781 6161 0 2270 111 0 3 chr6 187333852 187334159 -1945395 + AluSq SINE Alu 1 306 -7 192 222 111 0 chr6 187334674 187334728 -1944826 + L2 LINE L2 3254 3313 0 566 330 82 46 chr6 187334858 187335357 -1944197 + L2 LINE L2 2762 3271 -1 792 339 33 25 chr6 187336480 187336875 -1942679 + MLT1E LTR MaLR 22 419 -174 536 293 99 50 chr6 187336976 187337441 -1942113 + L1MEd LINE L1 347 834 -5285 270 243 194 0 chr6 187338116 187338219 -1941335 - L2 LINE L2 -871 2443 2321 229 286 51 46 chr6 187338665 187338861 -1940693 + MER65A LTR ERV1 249 445 0 1196 289 70 13 chr6 187339148 187339807 -1939747 + L2 LINE L2 2616 3309 -4 456 233 16 31 chr6 187339807 187340000 -1939554 + L1 LINE L1 3794 3983 -2163 432 260 162 71 chr6 187340000 187340383 -1939171 + L1 LINE L1 4508 4925 -1221 1735 222 37 26 chr6 187340386 187340876 -1938678 + MLT1D LTR MaLR 1 495 -10 226 172 92 69 chr6 187340877 187340964 -1938590 + L1 LINE L1 4924 5012 -1134 312 261 172 6 chr6 187340964 187341121 -1938433 + L1ME3A LINE L1 5034 5216 -930 890 279 80 28 chr6 187341158 187341833 -1937721 + L1ME3A LINE L1 5259 5968 -202 31 44 0 0 chr6 187342210 187342255 -1937299 + AT_rich Low_complexity Low_complexity 1 45 0 2118 129 29 45 chr6 187342339 187342720 -1936834 - THE1C LTR MaLR 0 375 1 461 50 118 0 chr6 187343745 187343906 -1935648 + (TA)n Simple_repeat Simple_repeat 1 180 0 2537 53 0 0 chr6 187344048 187344347 -1935207 - AluY SINE Alu -12 299 1 39 68 0 0 chr6 187344419 187344493 -1935061 + AT_rich Low_complexity Low_complexity 1 74 0 201 167 0 0 chr6 187345889 187345925 -1933629 + (TA)n Simple_repeat Simple_repeat 2 37 0 294 238 25 0 chr6 187346390 187346470 -1933084 - L1M4 LINE L1 -1042 5104 5023 585 270 13 19 chr6 187346478 187346637 -1932917 - MER41D LTR ERV1 -10 547 390 1860 107 54 14 chr6 187346653 187346933 -1932621 - AluSq SINE Alu -20 293 3 297 0 0 0 chr6 187347229 187347262 -1932292 + (GA)n Simple_repeat Simple_repeat 2 34 0 1397 135 8 49 chr6 187347262 187347506 -1932048 - AluJo SINE Alu -34 278 45 244 216 52 60 chr6 187347511 187347627 -1931927 + TAR1 Satellite telomeric 1904 2018 -93 2099 126 7 3 chr6 187348520 187348829 -1930725 - AluSx SINE Alu -2 310 1 1961 153 0 3 chr6 187349403 187349704 -1929850 - AluSx SINE Alu -12 300 1 319 196 0 113 chr6 187349867 187349964 -1929590 - LTR60 LTR ERV1 -390 196 111 502 196 9 9 chr6 187350005 187350112 -1929442 - LTR60 LTR ERV1 -479 107 1 1140 207 92 14 chr6 187350193 187350734 -1928820 + L1MC3 LINE L1 4964 5546 -745 2585 168 45 16 chr6 187350745 187351304 -1928250 + MER34C LTR ERV1 7 581 -4 571 255 16 11 chr6 187351310 187351498 -1928056 + L1MC3 LINE L1 5577 5765 -2020 4091 143 46 36 chr6 187351711 187352372 -1927182 + MER72 LTR ERV1 1 671 -51 2135 140 0 3 chr6 187352372 187352680 -1926874 + AluSq SINE Alu 5 311 -2 4091 143 46 36 chr6 187352680 187352733 -1926821 + MER72 LTR ERV1 671 722 0 772 272 30 45 chr6 187353133 187353827 -1925727 + MER72-int LTR ERV1 173 1063 -3873 1804 209 105 26 chr6 187353834 187354156 -1925398 - MLT2B2 LTR ERVL -8 507 135 2082 136 34 55 chr6 187354156 187354230 -1925324 - THE1C LTR MaLR 0 375 301 2525 71 0 0 chr6 187354230 187354541 -1925013 + AluY SINE Alu 1 311 0 2082 136 34 55 chr6 187354541 187354849 -1924705 - THE1C LTR MaLR -74 301 1 1804 209 105 26 chr6 187354849 187354994 -1924560 - MLT2B2 LTR ERVL -380 135 3 1365 202 35 30 chr6 187354997 187355432 -1924122 + MER72-int LTR ERV1 1063 1499 -3437 790 209 81 73 chr6 187355493 187355876 -1923678 + MER72-int LTR ERV1 1699 2084 -2852 4697 209 30 77 chr6 187355968 187357365 -1922189 + MER72-int LTR ERV1 2940 4263 -673 1319 160 184 0 chr6 187357365 187357609 -1921945 + AluSg SINE Alu 1 289 -21 4697 209 30 77 chr6 187357609 187357702 -1921852 + MER72-int LTR ERV1 4263 4359 -577 1208 227 147 7 chr6 187357850 187358259 -1921295 + L1MC3 LINE L1 5762 6227 -1558 1547 194 36 66 chr6 187358259 187358698 -1920856 + MSTB1 LTR MaLR 1 426 -6 555 126 0 11 chr6 187359576 187359671 -1919883 + MER4A LTR ERV1 5 98 -566 1509 141 0 49 chr6 187359717 187360001 -1919553 + MER4A LTR ERV1 372 641 -23 2140 130 0 13 chr6 187360001 187360317 -1919237 + AluSx SINE Alu 1 312 0 451 69 59 40 chr6 187360460 187360561 -1918993 + CT-rich Low_complexity Low_complexity 1 103 0 1273 205 19 4 chr6 187360561 187360824 -1918730 - AluJo SINE Alu -3 309 43 9716 65 1 2 chr6 187361317 187362600 -1916954 + HERVK9 LTR ERVK 1506 2786 -3130 4424 57 50 0 chr6 187362600 187363202 -1916352 + HERVK9 LTR ERVK 3711 4342 -1574 6317 84 6 1 chr6 187363203 187364071 -1915483 + HERVK9 LTR ERVK 4763 5634 -282 2040 66 29 0 chr6 187364168 187364442 -1915112 + HERVK9 LTR ERVK 5635 5916 0 3551 112 4 2 chr6 187364443 187364952 -1914602 + MER9 LTR ERVK 2 511 0 3754 226 88 34 chr6 187364954 187367391 -1912163 - L1M4 LINE L1 -2940 3704 1041 3695 100 0 6 chr6 187367391 187367903 -1911651 + MER9 LTR ERVK 1 509 -2 3754 226 88 34 chr6 187367903 187368424 -1911130 - L1M4 LINE L1 -5603 1041 550 517 79 0 0 chr6 187368436 187368512 -1911042 - L1MB2 LINE L1 -7 6164 6089 1308 127 34 4 chr6 187368513 187368750 -1910804 - MER6 DNA MER2_type 0 865 622 1638 93 0 0 chr6 187368754 187368959 -1910595 - AluSg/x SINE Alu -21 291 87 5206 98 78 38 chr6 187368964 187370124 -1909430 + MER4A-int LTR ERV1 3860 6596 -2 553 134 21 10 chr6 187370132 187370229 -1909325 + MER4A LTR ERV1 1 98 -566 1437 163 8 62 chr6 187370229 187370592 -1908962 + MER4A LTR ERV1 263 664 0 289 183 37 12 chr6 187370592 187370674 -1908880 - MER4B LTR ERV1 -526 84 1 835 163 8 0 chr6 187370748 187370877 -1908677 + FLAM_C SINE Alu 1 130 -3 2414 110 16 10 chr6 187371227 187371792 -1907762 + MER4A LTR ERV1 1 636 -28 2076 137 7 10 chr6 187371793 187372093 -1907461 + AluSx SINE Alu 2 300 -12 1047 72 7 0 chr6 187372180 187372319 -1907235 + AluSg/x SINE Alu 163 302 -8 1496 166 163 0 chr6 187372390 187372714 -1906840 - LTR49 LTR ERV1 0 595 219 1191 139 14 9 chr6 187372714 187372930 -1906624 + MER4D LTR ERV1 1 217 -686 201 213 21 0 chr6 187375288 187375335 -1904219 + L2 LINE L2 3210 3257 -15 363 274 165 6 chr6 187375442 187375606 -1903948 - MIR SINE MIR -1 261 72 291 316 103 0 chr6 187375706 187375823 -1903731 - L2 LINE L2 -2 3270 3142 747 204 93 60 chr6 187376399 187376732 -1902822 + L1MC5 LINE L1 6697 7040 -921 256 191 60 12 chr6 187376834 187376918 -1902636 + L1MC5 LINE L1 7829 7916 -45 2337 89 0 0 chr6 187377307 187377600 -1901954 - AluSx SINE Alu -19 293 1 464 186 133 67 chr6 187380483 187380693 -1898861 + L1ME3A LINE L1 5593 5816 -305 23 0 0 0 chr6 187382417 187382440 -1897114 + AT_rich Low_complexity Low_complexity 1 23 0 1372 150 33 25 chr6 187382784 187383024 -1896530 + AluJo SINE Alu 49 290 -22 399 132 33 33 chr6 187383315 187383406 -1896148 + L1MC5 LINE L1 7115 7205 -756 327 246 179 0 chr6 187383419 187383553 -1896001 + L1MC5 LINE L1 7342 7499 -462 359 271 68 57 chr6 187383575 187383752 -1895802 + L1ME3A LINE L1 5966 6144 -26 391 285 201 22 chr6 187383810 187384168 -1895386 + L1MC/D LINE L1 4162 4583 -1563 240 312 32 19 chr6 187384279 187384433 -1895121 + L1MC/D LINE L1 5627 5782 -2026 270 303 109 57 chr6 187384856 187385031 -1894523 + MIR SINE MIR 60 243 -19 2242 118 0 0 chr6 187387186 187387482 -1892072 - AluSx SINE Alu -16 296 1 286 311 67 28 chr6 187387582 187387762 -1891792 - L2 LINE L2 -259 3054 2868 2168 116 36 3 chr6 187388919 187389269 -1890285 + AluSq SINE Alu 1 360 0 2356 88 7 0 chr6 187389280 187389586 -1889968 + AluY SINE Alu 1 308 -3 1775 146 0 0 chr6 187390531 187390784 -1888770 - AluSx SINE Alu -13 299 47 34 42 0 0 chr6 187390855 187390903 -1888651 + AT_rich Low_complexity Low_complexity 1 48 0 22 56 0 0 chr6 187391835 187391871 -1887683 + AT_rich Low_complexity Low_complexity 1 36 0 1878 169 0 13 chr6 187391929 187392242 -1887312 - AluJo SINE Alu -3 309 1 2286 86 3 0 chr6 187392867 187393158 -1886396 - AluSx SINE Alu -20 292 1 844 165 0 0 chr6 187393161 187393294 -1886260 - AluJo/FLAM SINE Alu -169 133 1 569 279 92 22 chr6 187393601 187393830 -1885724 - MIR SINE MIR -2 260 16 1434 182 32 26 chr6 187394054 187394395 -1885159 - Looper DNA T2_type -37 1521 1179 789 126 0 0 chr6 187394415 187394542 -1885012 - Looper DNA T2_type -491 1067 941 21 36 0 0 chr6 187394584 187394612 -1884942 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 187394773 187394794 -1884760 + AT_rich Low_complexity Low_complexity 1 21 0 938 68 0 8 chr6 187395994 187396126 -1883428 + (CTG)n Simple_repeat Simple_repeat 3 133 0 770 189 29 21 chr6 187396436 187396679 -1882875 + L1ME2 LINE L1 5118 5362 -784 11484 112 51 119 chr6 187396679 187397583 -1881971 - Tigger1 DNA MER2_type 0 2418 1454 1277 184 13 39 chr6 187397583 187397816 -1881738 - AluJo SINE Alu -85 227 1 11484 112 51 119 chr6 187397816 187399048 -1880506 - Tigger1 DNA MER2_type -964 1454 235 1952 120 57 17 chr6 187399048 187399347 -1880207 + AluSx SINE Alu 1 311 -1 11484 112 51 119 chr6 187399347 187399548 -1880006 - Tigger1 DNA MER2_type -2183 235 22 2094 225 144 10 chr6 187399556 187400264 -1879290 + L1ME2 LINE L1 5360 6162 -4 2472 72 0 3 chr6 187400272 187400578 -1878976 - AluSx SINE Alu -5 307 3 197 259 69 17 chr6 187401883 187401941 -1877613 + L2 LINE L2 3252 3312 -1 205 356 78 0 chr6 187402243 187402333 -1877221 + L2 LINE L2 3158 3254 -18 207 0 0 0 chr6 187403921 187403944 -1875610 + (TTG)n Simple_repeat Simple_repeat 2 24 0 446 247 63 19 chr6 187403951 187404109 -1875445 + MIR SINE MIR 76 240 -22 761 145 0 23 chr6 187405816 187405947 -1873607 + FLAM_C SINE Alu 1 128 -5 205 253 160 40 chr6 187406041 187406116 -1873438 + MIR SINE MIR 52 135 -73 2071 96 13 30 chr6 187406875 187407178 -1872376 - AluSx SINE Alu -14 298 1 653 169 119 0 chr6 187407469 187407587 -1871967 - FRAM SINE Alu -23 153 22 273 303 38 0 chr6 187408034 187408121 -1871433 - MIR SINE MIR -100 108 15 646 318 70 4 chr6 187408142 187408384 -1871170 - MIR SINE MIR -4 258 1 524 180 116 35 chr6 187409282 187409471 -1870083 - MSTC LTR MaLR -165 200 1 250 287 89 0 chr6 187410794 187410895 -1868659 - L1ME LINE L1 -469 5652 5543 234 218 92 11 chr6 187410896 187410983 -1868571 - L1P4 LINE L1 -652 5516 5423 2280 94 3 0 chr6 187411268 187411555 -1867999 + AluSq SINE Alu 1 288 -25 2353 82 3 16 chr6 187412871 187413175 -1866379 - AluSq SINE Alu -13 300 1 734 184 92 0 chr6 187413323 187413464 -1866090 - FRAM SINE Alu -22 154 1 374 217 179 0 chr6 187413789 187413895 -1865659 - MER58B DNA MER1_type 0 341 217 855 182 234 84 chr6 187415315 187415661 -1863893 - LTR42 LTR ERVL -95 400 3 254 282 198 22 chr6 187416394 187416763 -1862791 - HAL1 LINE L1 -70 2437 2004 271 297 69 0 chr6 187416884 187416985 -1862569 - HAL1 LINE L1 -752 1755 1648 * 300 140 18 0 chr6 187416983 187417040 -1862514 - HAL1 LINE L1 -1061 1446 1389 320 199 60 101 chr6 187417146 187417519 -1862035 - HAL1 LINE L1 -1316 1191 764 368 259 134 30 chr6 187417616 187417817 -1861737 - HAL1 LINE L1 -1879 628 407 330 263 69 38 chr6 187418167 187418327 -1861227 - L1ME LINE L1 -338 5783 5619 502 276 151 46 chr6 187418488 187418839 -1860715 - L1ME LINE L1 -748 5398 5011 2320 92 0 0 chr6 187419321 187419614 -1859940 - AluSg SINE Alu -17 293 1 1244 158 49 4 chr6 187421180 187421427 -1858127 - Tigger2 DNA MER2_type -10 2708 2451 1194 161 22 9 chr6 187421476 187421700 -1857854 - Tigger2 DNA MER2_type -1961 757 531 1038 198 49 0 chr6 187421697 187421944 -1857610 - Tigger2 DNA MER2_type -2459 259 1 * 514 252 61 20 chr6 187427806 187427953 -1851601 - MIR SINE MIR -64 198 46 3309 168 28 68 chr6 187427960 187428274 -1851280 - LTR39 LTR ERV1 -1 782 457 2081 147 0 0 chr6 187428274 187428573 -1850981 + AluSx SINE Alu 1 299 -13 3309 168 28 68 chr6 187428573 187428876 -1850678 - LTR39 LTR ERV1 -326 457 199 934 42 17 0 chr6 187428876 187428996 -1850558 - L1PA4 LINE L1 0 6155 6034 3309 168 28 68 chr6 187428996 187429138 -1850416 - LTR39 LTR ERV1 -584 199 53 507 282 139 23 chr6 187429631 187429890 -1849664 - L2 LINE L2 -11 3302 3014 2060 99 0 21 chr6 187430152 187430434 -1849120 + AluSg SINE Alu 1 276 -34 185 0 40 0 chr6 187430434 187430459 -1849095 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 227 355 0 11 chr6 187430463 187430556 -1848998 + LTR33 LTR ERVL 66 157 -364 410 234 125 0 chr6 187430651 187430779 -1848775 + LTR33 LTR ERVL 378 521 0 697 263 31 57 chr6 187431072 187431300 -1848254 + MIR SINE MIR 28 249 -13 388 322 127 40 chr6 187432050 187432247 -1847307 + L2 LINE L2 2278 2456 -858 2126 134 0 0 chr6 187432247 187432537 -1847017 - AluSc SINE Alu -19 290 1 388 322 127 40 chr6 187432537 187432889 -1846665 + L2 LINE L2 2456 2875 -439 488 246 47 109 chr6 187433025 187433315 -1846239 - MLT1H LTR MaLR -167 375 109 2251 97 0 31 chr6 187433315 187433636 -1845918 - AluY SINE Alu 0 311 1 488 246 47 109 chr6 187433636 187433682 -1845872 - MLT1H LTR MaLR -433 109 62 183 129 0 0 chr6 187434146 187434177 -1845377 + (CAA)n Simple_repeat Simple_repeat 2 32 0 243 254 0 0 chr6 187435619 187435674 -1843880 + (TG)n Simple_repeat Simple_repeat 2 56 0 545 207 59 7 chr6 187436406 187436541 -1843013 + MLT1I LTR MaLR 35 176 -233 293 238 0 0 chr6 187436627 187436690 -1842864 + MLT1I LTR MaLR 344 406 -3 261 57 0 0 chr6 187437604 187437639 -1841915 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2136 132 3 6 chr6 187437654 187437965 -1841589 - AluSg SINE Alu 0 310 1 300 260 14 14 chr6 187438291 187438364 -1841190 + L3 LINE CR1 558 630 -947 336 266 263 36 chr6 187439519 187439627 -1839927 + L1M4 LINE L1 2770 2852 -3294 2247 123 7 0 chr6 187439627 187439929 -1839625 + AluSx SINE Alu 1 304 -8 336 266 263 36 chr6 187439929 187439980 -1839574 + L1M4 LINE L1 2852 2890 -3256 1462 192 17 41 chr6 187439980 187440271 -1839283 + AluJo SINE Alu 18 301 -11 336 266 263 36 chr6 187440271 187440402 -1839152 + L1M4 LINE L1 2890 2990 -3156 2143 136 0 0 chr6 187440402 187440703 -1838851 + AluSx SINE Alu 1 301 -11 336 266 263 36 chr6 187440703 187440775 -1838779 + L1M4 LINE L1 2990 3217 -2929 342 298 145 23 chr6 187441285 187441416 -1838138 - MIR SINE MIR -114 148 2 363 292 57 64 chr6 187441424 187441617 -1837937 + L3 LINE CR1 661 853 -724 2063 118 3 0 chr6 187441617 187441929 -1837625 + AluSg SINE Alu 1 310 0 363 292 57 64 chr6 187441929 187441999 -1837555 + L3 LINE CR1 853 922 -655 400 211 105 38 chr6 187442016 187442109 -1837445 - LTR33 LTR ERVL -2 519 434 2065 158 60 26 chr6 187442109 187442258 -1837296 + MSTB1 LTR MaLR 1 144 -288 2238 103 0 3 chr6 187442258 187442550 -1837004 - AluSq SINE Alu -17 296 6 2065 158 60 26 chr6 187442550 187442801 -1836753 + MSTB1 LTR MaLR 144 418 -14 420 20 0 0 chr6 187442801 187442850 -1836704 + (CA)n Simple_repeat Simple_repeat 2 50 0 2065 158 60 26 chr6 187442850 187442866 -1836688 + MSTB1 LTR MaLR 418 432 0 400 211 105 38 chr6 187442866 187442905 -1836649 - LTR33 LTR ERVL -87 434 378 447 278 47 24 chr6 187442988 187443157 -1836397 - LTR33 LTR ERVL -348 173 1 273 308 158 45 chr6 187443168 187443434 -1836120 + L3 LINE CR1 944 1239 -338 1965 188 72 9 chr6 187443487 187443944 -1835610 + Tigger5 DNA MER2_type 1838 2323 0 891 282 89 47 chr6 187443946 187444520 -1835034 + L1M4 LINE L1 2969 3566 -2580 3220 222 99 50 chr6 187444531 187446039 -1833515 + L1M4 LINE L1 471 1904 -4740 928 70 38 13 chr6 187446039 187446197 -1833357 + (GAAA)n Simple_repeat Simple_repeat 3 164 0 3220 222 99 50 chr6 187446197 187447855 -1831699 + L1M4 LINE L1 1904 3752 -2892 808 243 44 8 chr6 187447855 187448152 -1831402 + L1M4 LINE L1 5336 5637 -1007 439 269 35 101 chr6 187448185 187448758 -1830796 + L1MC4a LINE L1 6049 6583 -1225 218 230 40 14 chr6 187448801 187448875 -1830679 + (TA)n Simple_repeat Simple_repeat 2 77 0 432 284 64 23 chr6 187448975 187449239 -1830315 + L1MC5 LINE L1 7251 7525 -436 23 65 0 16 chr6 187450109 187450142 -1829412 + AT_rich Low_complexity Low_complexity 1 34 -27 387 43 0 0 chr6 187450142 187450189 -1829365 - L1PA6 LINE L1 -8 6146 6100 23 65 0 16 chr6 187450189 187450217 -1829337 + AT_rich Low_complexity Low_complexity 34 61 0 376 364 103 23 chr6 187451130 187451432 -1828122 - L2 LINE L2 -23 3249 2924 25 31 0 0 chr6 187451540 187451572 -1827982 + AT_rich Low_complexity Low_complexity 1 32 0 2177 41 15 0 chr6 187451632 187451898 -1827656 - L1PA5 LINE L1 -4 6150 5881 352 369 60 21 chr6 187451901 187452134 -1827420 - L2 LINE L2 -606 2708 2467 718 191 93 6 chr6 187452383 187452545 -1827009 + AluSp SINE Alu 123 298 -15 706 299 57 35 chr6 187452721 187453125 -1826429 - L1ME3A LINE L1 -219 5951 5539 186 43 0 0 chr6 187453191 187453214 -1826340 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3742 208 28 31 chr6 187453214 187454228 -1825326 - L1 LINE L1 -1449 4697 3687 994 282 69 32 chr6 187454278 187455019 -1824535 - L1ME3A LINE L1 -2027 4119 3352 6765 152 29 9 chr6 187455053 187455184 -1824370 - L1MA8 LINE L1 -53 6238 6111 4874 105 18 1 chr6 187455184 187455913 -1823641 + L1MA2 LINE L1 5556 6303 -1 6765 152 29 9 chr6 187455913 187457895 -1821659 - L1MA8 LINE L1 -180 6111 4083 1778 214 76 15 chr6 187458049 187458525 -1821029 + LTR22 LTR ERVK 1 505 -4 5922 182 2 8 chr6 187458565 187459601 -1819953 + L1PA15-16 LINE L1 1 1030 -5819 2540 112 27 0 chr6 187459601 187460013 -1819541 + L1P4 LINE L1 5268 5690 -478 2154 128 0 0 chr6 187460015 187460305 -1819249 + AluSp SINE Alu 1 290 -23 325 286 0 11 chr6 187460316 187460407 -1819147 - L1MC4 LINE L1 -1339 6703 6614 * 350 211 0 53 chr6 187460326 187460421 -1819133 + L1MC4 LINE L1 6614 6703 -1339 2180 116 4 12 chr6 187460446 187460808 -1818746 + L1PA8A LINE L1 5648 6011 -120 314 195 73 0 chr6 187460819 187460901 -1818653 + L1PA8 LINE L1 5946 6033 -139 * 327 183 73 0 chr6 187460896 187460978 -1818576 + L1PA8 LINE L1 5946 6033 -139 296 207 73 0 chr6 187460973 187461055 -1818499 + L1PA8 LINE L1 5946 6033 -139 * 327 183 73 0 chr6 187461050 187461132 -1818422 + L1PA8 LINE L1 5946 6033 -139 315 214 61 10 chr6 187461127 187461225 -1818329 + L1PA8 LINE L1 5946 6048 -124 * 345 204 61 10 chr6 187461204 187461302 -1818252 + L1PA8 LINE L1 5946 6048 -124 327 183 73 0 chr6 187461281 187461363 -1818191 + L1PA8 LINE L1 5946 6033 -139 * 327 184 71 20 chr6 187461358 187461456 -1818098 + L1PA8 LINE L1 5946 6048 -124 309 171 85 12 chr6 187461435 187461517 -1818037 + L1PA8 LINE L1 5946 6033 -139 * 327 184 71 20 chr6 187461512 187461610 -1817944 + L1PA8 LINE L1 5946 6048 -124 * 342 184 71 20 chr6 187461589 187461687 -1817867 + L1PA8 LINE L1 5946 6048 -124 * 365 158 73 0 chr6 187461666 187461748 -1817806 + L1PA8 LINE L1 5946 6033 -139 319 158 85 12 chr6 187461743 187461825 -1817729 + L1PA8 LINE L1 5946 6033 -139 * 317 183 73 0 chr6 187461820 187461902 -1817652 + L1PA8 LINE L1 5946 6033 -139 * 320 168 99 40 chr6 187461878 187461979 -1817575 + L1PA8 LINE L1 5927 6033 -139 * 345 194 61 10 chr6 187461974 187462072 -1817482 + L1PA8 LINE L1 5946 6048 -124 291 185 86 0 chr6 187462051 187462132 -1817422 + L1PA8 LINE L1 5946 6033 -139 * 327 183 73 0 chr6 187462127 187462209 -1817345 + L1PA8 LINE L1 5946 6033 -139 316 195 73 0 chr6 187462204 187462286 -1817268 + L1PA8 LINE L1 5946 6033 -139 * 327 183 73 0 chr6 187462281 187462363 -1817191 + L1PA8 LINE L1 5946 6033 -139 * 335 204 61 10 chr6 187462358 187462456 -1817098 + L1PA8 LINE L1 5946 6048 -124 325 169 78 0 chr6 187462435 187462512 -1817042 + L1PA8 LINE L1 5946 6028 -144 * 1337 139 23 0 chr6 187462512 187462728 -1816826 + L1PA10 LINE L1 5946 6166 -2 426 243 85 75 chr6 187462753 187463190 -1816364 - L1MEd LINE L1 -4971 1148 708 300 275 22 11 chr6 187463197 187463288 -1816266 + GA-rich Low_complexity Low_complexity 5 96 0 786 41 0 0 chr6 187463374 187463472 -1816082 + L1PA5 LINE L1 6055 6152 -2 2831 204 73 11 chr6 187463919 187464749 -1814805 + L1 LINE L1 2939 3820 -2326 410 273 86 0 chr6 187464756 187464895 -1814659 + ERVL LTR ERVL 1690 1840 -3924 1651 227 33 0 chr6 187464908 187465367 -1814187 + L1MA7 LINE L1 3179 3652 -2494 5853 28 0 0 chr6 187465382 187466104 -1813450 - L1PA4 LINE L1 -180 5975 5254 1429 45 6 0 chr6 187466104 187466282 -1813272 + L1PA4 LINE L1 5977 6155 0 4738 162 34 33 chr6 187466301 187467385 -1812169 + L1MA7 LINE L1 3663 4747 -1399 29990 103 16 58 chr6 187468559 187474978 -1804576 + L1PA7 LINE L1 12 6153 -1 5015 154 48 12 chr6 187475726 187477231 -1802323 + L1MA7 LINE L1 4736 6287 -4 303 246 40 16 chr6 187477506 187477632 -1801922 + L1M4 LINE L1 3559 3687 -2459 * 1034 236 112 32 chr6 187477615 187478171 -1801383 + L1M4 LINE L1 3913 4512 -1634 415 303 68 15 chr6 187481114 187481246 -1798308 - MIR3 SINE MIR -40 168 30 337 347 7 20 chr6 187483223 187483373 -1796181 + MIR SINE MIR 1 148 -114 250 184 0 0 chr6 187483381 187483430 -1796124 + L1MA4 LINE L1 6055 6103 -197 1303 150 4 4 chr6 187483446 187483693 -1795861 + L1MA4 LINE L1 6049 6295 -5 297 219 36 117 chr6 187483742 187483879 -1795675 + MIR SINE MIR 136 261 -1 500 191 0 0 chr6 187484725 187484809 -1794745 + AluS SINE Alu 1 84 -229 180 132 0 113 chr6 187486010 187486063 -1793491 + L2 LINE L2 3267 3313 0 34 42 0 0 chr6 187488265 187488313 -1791241 + AT_rich Low_complexity Low_complexity 1 48 0 302 306 103 52 chr6 187488586 187488916 -1790638 + HAL1b LINE L1 4 350 -998 730 131 0 83 chr6 187488984 187489129 -1790425 + FLAM_C SINE Alu 1 133 0 227 275 87 47 chr6 187489200 187489349 -1790205 + HAL1b LINE L1 742 896 -452 466 302 170 37 chr6 187489670 187490364 -1789190 - L2 LINE L2 0 3313 2485 546 300 169 22 chr6 187490378 187490645 -1788909 + L2 LINE L2 900 1205 -2109 555 307 38 13 chr6 187490860 187491098 -1788456 + MLT1H1 LTR MaLR 1 244 -311 1711 173 42 25 chr6 187491100 187491453 -1788101 - THE1B LTR MaLR 0 364 6 11024 106 19 8 chr6 187491457 187493019 -1786535 - THE1B-int LTR MaLR 0 1580 1 1954 150 39 33 chr6 187493019 187493379 -1786175 - THE1B LTR MaLR 0 364 3 681 260 61 0 chr6 187493429 187493660 -1785894 + MLT1H1 LTR MaLR 286 530 -25 230 260 10 62 chr6 187493660 187493756 -1785798 + MLT1H1-int LTR MaLR 7 97 -1274 758 174 75 0 chr6 187494059 187494220 -1785334 - LTR64 LTR ERVK 0 558 386 2386 94 52 0 chr6 187494222 187494584 -1784970 + L1PA14 LINE L1 5781 6161 0 2264 106 0 3 chr6 187494719 187495022 -1784532 + AluSq SINE Alu 1 302 -11 192 222 111 0 chr6 187495537 187495591 -1783963 + L2 LINE L2 3254 3313 0 577 323 94 48 chr6 187495682 187496220 -1783334 + L2 LINE L2 2716 3271 -1 799 314 48 40 chr6 187497343 187497738 -1781816 + MLT1E LTR MaLR 22 419 -174 533 319 39 20 chr6 187497901 187498155 -1781399 + L1ME3A LINE L1 400 658 -5461 283 233 194 0 chr6 187498978 187499081 -1780473 - L2 LINE L2 -871 2443 2321 239 331 39 39 chr6 187499461 187499721 -1779833 + MER65A LTR ERV1 186 445 0 1207 289 70 13 chr6 187500007 187500666 -1778888 + L2 LINE L2 2616 3309 -4 490 223 16 31 chr6 187500666 187500859 -1778695 + L1ME3A LINE L1 3777 3966 -2163 430 320 109 19 chr6 187500859 187501181 -1778373 + L1ME3A LINE L1 4491 4841 -1288 1723 222 37 26 chr6 187501245 187501735 -1777819 + MLT1D LTR MaLR 1 495 -10 365 269 219 4 chr6 187501735 187501977 -1777577 + L1ME3A LINE L1 4906 5199 -930 909 279 74 29 chr6 187502014 187502673 -1776881 + L1ME3A LINE L1 5242 5930 -223 203 286 12 12 chr6 187503027 187503111 -1776443 + (TA)n Simple_repeat Simple_repeat 1 84 0 2161 123 29 45 chr6 187503200 187503581 -1775973 - THE1C LTR MaLR 0 375 1 439 48 116 0 chr6 187504605 187504751 -1774803 + (TA)n Simple_repeat Simple_repeat 2 164 0 2488 58 0 0 chr6 187504885 187505180 -1774374 - AluY SINE Alu -16 295 1 39 68 0 0 chr6 187505252 187505326 -1774228 + AT_rich Low_complexity Low_complexity 1 74 0 201 167 0 0 chr6 187506718 187506754 -1772800 + (TA)n Simple_repeat Simple_repeat 2 37 0 294 238 25 0 chr6 187507217 187507297 -1772257 - L1M4 LINE L1 -1042 5104 5023 585 270 13 19 chr6 187507305 187507464 -1772090 - MER41D LTR ERV1 -10 547 390 1860 107 54 14 chr6 187507480 187507760 -1771794 - AluSq SINE Alu -20 293 3 351 0 0 0 chr6 187508056 187508095 -1771459 + (GA)n Simple_repeat Simple_repeat 2 40 0 1350 132 16 50 chr6 187508095 187508337 -1771217 - AluJo SINE Alu -34 278 45 244 216 52 60 chr6 187508342 187508458 -1771096 + TAR1 Satellite telomeric 1904 2018 -93 2028 130 10 3 chr6 187509351 187509659 -1769895 - AluSx SINE Alu -2 310 1 1961 153 0 3 chr6 187510233 187510534 -1769020 - AluSx SINE Alu -12 300 1 319 196 0 113 chr6 187510697 187510794 -1768760 - LTR60 LTR ERV1 -390 196 111 502 196 9 9 chr6 187510835 187510942 -1768612 - LTR60 LTR ERV1 -479 107 1 1140 207 92 14 chr6 187511023 187511564 -1767990 + L1MC3 LINE L1 4964 5546 -745 2603 167 47 14 chr6 187511575 187512132 -1767422 + MER34C LTR ERV1 7 581 -4 571 255 16 11 chr6 187512138 187512326 -1767228 + L1MC3 LINE L1 5577 5765 -2020 4058 146 46 36 chr6 187512539 187513200 -1766354 + MER72 LTR ERV1 1 671 -51 2135 140 0 3 chr6 187513200 187513508 -1766046 + AluSq SINE Alu 5 311 -2 4058 146 46 36 chr6 187513508 187513561 -1765993 + MER72 LTR ERV1 671 722 0 772 270 30 45 chr6 187513961 187514655 -1764899 + MER72-int LTR ERV1 173 1063 -3873 1804 209 105 26 chr6 187514662 187514984 -1764570 - MLT2B2 LTR ERVL -8 507 135 2082 139 34 47 chr6 187514984 187515058 -1764496 - THE1C LTR MaLR 0 375 302 2509 71 0 0 chr6 187515058 187515367 -1764187 + AluY SINE Alu 1 309 -2 2082 139 34 47 chr6 187515367 187515672 -1763882 - THE1C LTR MaLR -73 302 1 1804 209 105 26 chr6 187515672 187515817 -1763737 - MLT2B2 LTR ERVL -380 135 3 1345 205 35 30 chr6 187515820 187516255 -1763299 + MER72-int LTR ERV1 1063 1499 -3437 790 209 81 73 chr6 187516316 187516699 -1762855 + MER72-int LTR ERV1 1699 2084 -2852 4677 212 32 60 chr6 187516791 187518185 -1761369 + MER72-int LTR ERV1 2940 4294 -642 1299 161 186 0 chr6 187518187 187518429 -1761125 + AluSg SINE Alu 1 287 -23 1208 227 147 7 chr6 187518672 187519081 -1760473 + L1MC3 LINE L1 5762 6227 -1558 1547 194 36 66 chr6 187519081 187519520 -1760034 + MSTB1 LTR MaLR 1 426 -6 555 126 0 11 chr6 187520398 187520493 -1759061 + MER4A LTR ERV1 5 98 -566 1483 144 0 49 chr6 187520539 187520823 -1758731 + MER4A LTR ERV1 372 641 -23 2149 126 0 19 chr6 187520823 187521141 -1758413 + AluSx SINE Alu 1 312 0 451 69 59 40 chr6 187521283 187521384 -1758170 + CT-rich Low_complexity Low_complexity 1 103 0 1316 198 19 4 chr6 187521384 187521647 -1757907 - AluJo SINE Alu -3 309 43 9679 66 1 2 chr6 187522140 187523423 -1756131 + HERVK9 LTR ERVK 1506 2786 -3130 4424 57 50 0 chr6 187523423 187524025 -1755529 + HERVK9 LTR ERVK 3711 4342 -1574 6377 81 6 1 chr6 187524026 187524894 -1754660 + HERVK9 LTR ERVK 4763 5634 -282 1999 73 29 0 chr6 187524991 187525265 -1754289 + HERVK9 LTR ERVK 5635 5916 0 3551 112 4 2 chr6 187525266 187525775 -1753779 + MER9 LTR ERVK 2 511 0 3754 227 88 34 chr6 187525777 187528215 -1751339 - L1M4 LINE L1 -2940 3704 1041 3659 99 0 10 chr6 187528215 187528729 -1750825 + MER9 LTR ERVK 1 509 -2 3754 227 88 34 chr6 187528729 187529250 -1750304 - L1M4 LINE L1 -5603 1041 550 549 71 0 36 chr6 187529254 187529338 -1750216 - L1MB2 LINE L1 -2 6169 6089 1431 127 34 4 chr6 187529339 187529576 -1749978 - MER6 DNA MER2_type 0 865 622 1652 88 0 0 chr6 187529580 187529785 -1749769 - AluSg/x SINE Alu -21 291 87 5693 98 78 38 chr6 187529790 187530950 -1748604 + MER4A-int LTR ERV1 3860 6596 -2 598 134 21 10 chr6 187530958 187531055 -1748499 + MER4A LTR ERV1 1 98 -566 1534 168 8 62 chr6 187531055 187531418 -1748136 + MER4A LTR ERV1 263 664 0 325 171 49 24 chr6 187531418 187531500 -1748054 - MER4B LTR ERV1 -526 84 1 236 139 0 0 chr6 187531501 187531537 -1748017 + LTR24B LTR ERV1 537 572 -4 888 163 8 0 chr6 187531574 187531703 -1747851 + FLAM_C SINE Alu 1 130 -3 2590 118 23 11 chr6 187532053 187532619 -1746935 + MER4A LTR ERV1 1 846 -26 2059 137 7 10 chr6 187532619 187532919 -1746635 + AluSx SINE Alu 2 300 -12 2590 118 23 11 chr6 187532919 187532947 -1746607 + MER4A LTR ERV1 846 872 0 1058 72 7 0 chr6 187533006 187533145 -1746409 + AluSg/x SINE Alu 163 302 -8 1649 166 163 0 chr6 187533216 187533540 -1746014 - LTR49 LTR ERV1 0 595 219 1292 139 14 9 chr6 187533540 187533756 -1745798 + MER4D LTR ERV1 1 217 -686 204 213 21 0 chr6 187536117 187536164 -1743390 + L2 LINE L2 3210 3257 -15 351 274 165 6 chr6 187536271 187536435 -1743119 - MIR SINE MIR -1 261 72 291 316 103 0 chr6 187536535 187536652 -1742902 - L2 LINE L2 -2 3270 3142 889 200 92 60 chr6 187537228 187537563 -1741991 + L1MC5 LINE L1 6697 7042 -919 299 191 60 12 chr6 187537663 187537747 -1741807 + L1MC5 LINE L1 7829 7916 -45 2329 92 0 0 chr6 187538136 187538429 -1741125 - AluSx SINE Alu -19 293 1 561 186 133 67 chr6 187541312 187541522 -1738032 + L1ME3A LINE L1 5593 5816 -305 23 0 0 0 chr6 187543246 187543269 -1736285 + AT_rich Low_complexity Low_complexity 1 23 0 1357 150 33 25 chr6 187543613 187543853 -1735701 + AluJo SINE Alu 49 290 -22 443 132 33 33 chr6 187544147 187544238 -1735316 + L1MC5 LINE L1 7115 7205 -756 385 250 176 0 chr6 187544249 187544385 -1735169 + L1MC5 LINE L1 7340 7499 -462 269 264 31 63 chr6 187544407 187544566 -1734988 + L1ME3A LINE L1 5966 6119 -51 250 244 117 43 chr6 187544770 187545000 -1734554 + L1MC/D LINE L1 4337 4583 -1563 305 289 114 52 chr6 187545054 187545265 -1734289 + L1MC/D LINE L1 5561 5784 -337 267 303 109 57 chr6 187545688 187545863 -1733691 + MIR SINE MIR 60 243 -19 2237 118 0 0 chr6 187548018 187548314 -1731240 - AluSx SINE Alu -16 296 1 289 311 67 28 chr6 187548414 187548594 -1730960 - L2 LINE L2 -259 3054 2868 2158 116 36 3 chr6 187549753 187550107 -1729447 + AluSq SINE Alu 1 364 0 2381 86 7 0 chr6 187550122 187550425 -1729129 + AluY SINE Alu 1 305 -6 1758 146 0 0 chr6 187551370 187551623 -1727931 - AluSx SINE Alu -13 299 47 34 42 0 0 chr6 187551694 187551742 -1727812 + AT_rich Low_complexity Low_complexity 1 48 0 22 56 0 0 chr6 187552677 187552713 -1726841 + AT_rich Low_complexity Low_complexity 1 36 0 1868 166 0 13 chr6 187552771 187553084 -1726470 - AluJo SINE Alu -3 309 1 2060 84 62 0 chr6 187553709 187553984 -1725570 - AluSx SINE Alu -20 292 1 899 165 0 0 chr6 187553987 187554120 -1725434 - AluJo/FLAM SINE Alu -169 133 1 564 279 92 22 chr6 187554427 187554656 -1724898 - MIR SINE MIR -2 260 16 1604 182 32 26 chr6 187554880 187555221 -1724333 - Looper DNA T2_type -37 1521 1179 854 138 0 0 chr6 187555241 187555371 -1724183 - Looper DNA T2_type -491 1067 938 21 36 0 0 chr6 187555410 187555438 -1724116 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 187555599 187555620 -1723934 + AT_rich Low_complexity Low_complexity 1 21 0 851 67 0 8 chr6 187556820 187556940 -1722614 + (CTG)n Simple_repeat Simple_repeat 3 121 0 890 185 29 21 chr6 187557250 187557493 -1722061 + L1ME2 LINE L1 5118 5362 -784 12568 110 51 118 chr6 187557493 187558397 -1721157 - Tigger1 DNA MER2_type 0 2418 1455 1140 189 35 40 chr6 187558397 187558625 -1720929 - AluJo SINE Alu -85 227 1 12568 110 51 118 chr6 187558625 187559857 -1719697 - Tigger1 DNA MER2_type -963 1455 234 1962 117 57 17 chr6 187559857 187560156 -1719398 + AluSx SINE Alu 1 311 -1 12568 110 51 118 chr6 187560156 187560328 -1719226 - Tigger1 DNA MER2_type -2184 234 52 186 103 0 0 chr6 187560328 187560357 -1719197 + (AAGTG)n Simple_repeat Simple_repeat 1 29 0 2387 230 130 10 chr6 187560363 187561064 -1718490 + L1ME2 LINE L1 5361 6145 -19 2500 71 0 3 chr6 187561081 187561389 -1718165 - AluSx SINE Alu -3 309 3 197 259 69 17 chr6 187562692 187562750 -1716804 + L2 LINE L2 3252 3312 -1 201 356 78 0 chr6 187563052 187563142 -1716412 + L2 LINE L2 3158 3254 -18 207 0 0 0 chr6 187564730 187564753 -1714801 + (TTG)n Simple_repeat Simple_repeat 2 24 0 449 247 63 19 chr6 187564760 187564918 -1714636 + MIR SINE MIR 76 240 -22 815 145 0 23 chr6 187566624 187566755 -1712799 + FLAM_C SINE Alu 1 128 -5 202 253 160 40 chr6 187566849 187566924 -1712630 + MIR SINE MIR 52 135 -73 2091 96 13 23 chr6 187567683 187567984 -1711570 - AluSx SINE Alu -14 298 1 687 188 101 22 chr6 187568255 187568393 -1711161 - FRAM SINE Alu -6 170 22 272 303 38 0 chr6 187568840 187568927 -1710627 - MIR SINE MIR -100 108 15 647 314 70 4 chr6 187568948 187569190 -1710364 - MIR SINE MIR -4 258 1 574 180 116 35 chr6 187570088 187570277 -1709277 - MSTC LTR MaLR -165 200 1 189 0 0 0 chr6 187570940 187570961 -1708593 + (T)n Simple_repeat Simple_repeat 1 21 0 401 275 185 33 chr6 187571466 187571921 -1707633 - L1MC/D LINE L1 -2016 5792 5269 2314 91 3 0 chr6 187572078 187572365 -1707189 + AluSq SINE Alu 1 288 -25 2329 86 3 16 chr6 187573681 187573985 -1705569 - AluSq SINE Alu -13 300 1 796 195 132 17 chr6 187574133 187574307 -1705247 - AluJo SINE Alu -22 290 97 426 209 333 68 chr6 187574599 187574776 -1704778 - MER58A DNA MER1_type 0 224 1 230 318 46 20 chr6 187575655 187575806 -1703748 + MARNA DNA Mariner 139 293 -293 983 182 234 84 chr6 187576126 187576472 -1703082 - LTR42 LTR ERVL -95 400 3 397 282 198 22 chr6 187577205 187577574 -1701980 - HAL1 LINE L1 -70 2437 2004 325 236 68 0 chr6 187577695 187577851 -1701703 - HAL1 LINE L1 -752 1755 1389 506 223 103 58 chr6 187577862 187578086 -1701468 - HAL1 LINE L1 -1215 1292 1059 430 242 148 90 chr6 187578091 187578603 -1700951 - HAL1 LINE L1 -1531 976 435 402 253 68 37 chr6 187578976 187579138 -1700416 - L1ME LINE L1 -338 5783 5617 263 244 102 48 chr6 187579277 187579648 -1699906 - L1ME LINE L1 -748 5398 5011 2354 92 0 0 chr6 187580130 187580423 -1699131 - AluSg SINE Alu -17 293 1 1381 156 48 4 chr6 187581989 187582239 -1697315 - Tigger2 DNA MER2_type -10 2708 2448 1293 161 22 9 chr6 187582285 187582509 -1697045 - Tigger2 DNA MER2_type -1961 757 531 1138 205 48 0 chr6 187582504 187582753 -1696801 - Tigger2 DNA MER2_type -2457 261 1 * 243 0 0 0 chr6 187583824 187583851 -1695703 + (T)n Simple_repeat Simple_repeat 1 27 0 185 235 29 44 chr6 187584493 187584561 -1694993 - L2 LINE L2 -15 3257 3191 1885 234 57 22 chr6 187584591 187585079 -1694475 - MLT2B2 LTR ERVL -10 505 1 1869 171 27 0 chr6 187585942 187586234 -1693320 + AluJb SINE Alu 1 300 -12 197 256 291 8 chr6 187586393 187586510 -1693044 + MER5A DNA MER1_type 35 184 -5 871 285 152 8 chr6 187586524 187587011 -1692543 - MLT2F LTR ERVL -3 660 104 2590 122 101 9 chr6 187587099 187587527 -1692027 + LTR24 LTR ERV1 1 467 0 363 121 0 0 chr6 187589159 187589217 -1690337 + (GA)n Simple_repeat Simple_repeat 1 58 0 221 278 0 14 chr6 187589407 187589479 -1690075 + CT-rich Low_complexity Low_complexity 2 72 0 346 246 0 3 chr6 187589683 187589756 -1689798 - AluS SINE Alu -246 57 1 199 188 21 0 chr6 187590433 187590481 -1689073 - L2 LINE L2 0 3313 3265 2382 33 0 0 chr6 187590481 187590756 -1688798 + L1PA4 LINE L1 5673 5947 -208 303 345 18 6 chr6 187591072 187591237 -1688317 + L1ME4a LINE L1 5740 5906 -215 356 0 23 0 chr6 187592022 187592066 -1687488 + (CA)n Simple_repeat Simple_repeat 2 46 0 1922 133 39 12 chr6 187592438 187592770 -1686784 - L1MA4A LINE L1 -6 6297 5957 736 211 239 28 chr6 187593032 187593425 -1686129 - L1MC5 LINE L1 -183 7778 7303 1805 179 3 3 chr6 187593489 187593796 -1685758 - AluJb SINE Alu -5 307 1 225 185 0 37 chr6 187594525 187594579 -1684975 + LTR13 LTR ERVK 580 631 -376 452 305 35 15 chr6 187596010 187596210 -1683344 + MIR SINE MIR 56 259 -3 13578 190 28 11 chr6 187596396 187596534 -1683020 - L1P4 LINE L1 -347 6522 6388 2037 111 54 0 chr6 187596534 187596813 -1682741 - AluSp SINE Alu -17 296 3 13578 190 28 11 chr6 187596813 187600488 -1679066 - L1P4 LINE L1 -481 6388 2645 427 290 5 43 chr6 187603999 187604185 -1675369 + (CA)n Simple_repeat Simple_repeat 2 180 0 262 316 7 37 chr6 187604215 187604351 -1675203 + (CATA)n Simple_repeat Simple_repeat 2 133 0 29 0 0 0 chr6 187606128 187606157 -1673397 + AT_rich Low_complexity Low_complexity 1 29 0 2201 96 0 3 chr6 187606249 187606542 -1673012 + AluSx SINE Alu 1 292 -20 804 168 0 0 chr6 187606553 187606678 -1672876 + FLAM_A SINE Alu 4 128 -5 4996 21 0 0 chr6 187608304 187608867 -1670687 + L1PA3 LINE L1 5593 6155 0 1634 189 113 0 chr6 187609601 187609956 -1669598 + MSTD LTR MaLR 2 396 0 265 292 0 14 chr6 187611580 187611652 -1667902 + MIR SINE MIR 6 76 -186 548 238 80 0 chr6 187612387 187612538 -1667016 - MER103 DNA DNA -2 164 2 3490 169 38 14 chr6 187612887 187613543 -1666011 - L1MC1 LINE L1 0 6333 5662 250 173 0 0 chr6 187614523 187614582 -1664972 - Charlie5 DNA MER1_type -2489 123 65 1883 158 75 3 chr6 187615166 187615526 -1664028 - MLT1B LTR MaLR -4 386 1 340 306 70 0 chr6 187617695 187617852 -1661702 - MIR SINE MIR -17 245 78 361 282 8 17 chr6 187617883 187618000 -1661554 - MER5A DNA MER1_type -65 124 9 935 167 108 39 chr6 187619111 187619315 -1660239 - L1MB8 LINE L1 -67 6111 5894 1028 301 32 9 chr6 187619315 187619888 -1659666 - L1M4c LINE L1 -4415 2723 1983 333 257 0 0 chr6 187619905 187620162 -1659392 + (TG)n Simple_repeat Simple_repeat 1 257 0 4840 225 125 29 chr6 187620162 187621965 -1657589 - L1M4c LINE L1 -4853 2002 12 789 218 24 12 chr6 187621972 187622137 -1657417 + MER58A DNA MER1_type 40 206 -18 873 106 53 15 chr6 187622315 187622447 -1657107 + FLAM_C SINE Alu 1 137 -6 456 239 169 109 chr6 187622625 187623010 -1656544 - LTR16C LTR ERVL -15 476 69 246 255 61 20 chr6 187623756 187623854 -1655700 + L2 LINE L2 3016 3117 -155 208 257 18 0 chr6 187624296 187624409 -1655145 + (TGGA)n Simple_repeat Simple_repeat 1 115 0 309 186 0 0 chr6 187624495 187624565 -1654989 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 309 294 75 20 chr6 187624571 187624717 -1654837 + MLT1K LTR MaLR 420 573 -15 217 297 0 0 chr6 187625807 187625871 -1653683 + MIR3 SINE MIR 108 171 -37 1851 136 29 0 chr6 187626423 187626741 -1652813 + AluSx SINE Alu 1 326 0 245 286 12 36 chr6 187626871 187626955 -1652599 + GA-rich Low_complexity Low_complexity 6 87 0 363 313 25 8 chr6 187628452 187628590 -1650964 + HAL1 LINE L1 621 762 -1745 1162 258 153 50 chr6 187628629 187629043 -1650511 + HAL1 LINE L1 877 1247 -1260 1410 236 32 43 chr6 187629043 187629412 -1650142 - MLT1A1 LTR MaLR 0 365 1 1162 258 153 50 chr6 187629412 187629882 -1649672 + HAL1 LINE L1 1247 1852 -655 1760 106 4 12 chr6 187630215 187630461 -1649093 + AluSx SINE Alu 3 246 -66 666 260 41 18 chr6 187630497 187630666 -1648888 + MER41D LTR ERV1 375 547 -10 310 198 25 12 chr6 187630674 187630755 -1648799 + L1M4 LINE L1 5023 5104 -1042 201 167 0 0 chr6 187631215 187631251 -1648303 + (TA)n Simple_repeat Simple_repeat 2 37 0 218 239 0 45 chr6 187631849 187631937 -1647617 + (CCCCG)n Simple_repeat Simple_repeat 1 84 0 23 0 0 0 chr6 187635131 187635154 -1644400 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr6 187635406 187635438 -1644116 + AT_rich Low_complexity Low_complexity 1 32 0 1118 239 0 0 chr6 187637680 187637898 -1641656 - Tigger7 DNA MER2_type -505 228 11 511 261 118 29 chr6 187638325 187638563 -1640991 - MLT1I LTR MaLR -33 376 118 431 246 136 35 chr6 187638801 187639000 -1640554 - Charlie8 DNA MER1_type -2152 265 94 341 303 74 6 chr6 187639425 187639587 -1639967 + MER58A DNA MER1_type 1 173 -51 246 88 0 0 chr6 187640337 187640371 -1639183 - L1P LINE L1 -881 5287 5254 * 3005 212 9 3 chr6 187640343 187640998 -1638556 - L1 LINE L1 -865 5281 4623 25 0 0 0 chr6 187641063 187641088 -1638466 + AT_rich Low_complexity Low_complexity 1 25 0 382 236 21 62 chr6 187641161 187641305 -1638249 - L1ME3A LINE L1 -71 6099 5962 264 150 0 17 chr6 187641392 187641452 -1638102 - L1MC5 LINE L1 -430 7531 7473 556 278 83 40 chr6 187641455 187641804 -1637750 - L1 LINE L1 -2828 3318 2955 613 180 78 7 chr6 187643617 187643754 -1635800 - MLT1C LTR MaLR -2 475 336 24 0 0 0 chr6 187643801 187643825 -1635729 + AT_rich Low_complexity Low_complexity 1 24 0 4785 164 19 23 chr6 187644616 187645516 -1634038 - L1MB3 LINE L1 -2 6181 5286 3109 176 42 8 chr6 187648041 187648571 -1630983 - MER44D DNA MER2_type -1 604 2 208 114 43 43 chr6 187649293 187649363 -1630191 + (TATG)n Simple_repeat Simple_repeat 1 70 0 216 242 16 32 chr6 187650545 187650607 -1628947 + L2 LINE L2 3205 3265 -7 2140 114 0 14 chr6 187654185 187654482 -1625072 - AluSx SINE Alu -19 293 1 189 269 86 54 chr6 187655027 187655120 -1624434 + L2 LINE L2 3173 3268 -45 905 134 0 0 chr6 187655916 187656043 -1623511 + FLAM_C SINE Alu 1 127 -16 332 320 96 17 chr6 187656250 187656428 -1623126 + MIR SINE MIR 29 220 -42 4263 52 2 2 chr6 187656723 187657222 -1622332 - L1PA7 LINE L1 -4 6150 5652 5113 58 20 1 chr6 187657222 187658130 -1621424 + L1PA7 LINE L1 4716 5635 -519 182 217 267 0 chr6 187658302 187658362 -1621192 + L2 LINE L2 3238 3313 0 2162 121 7 0 chr6 187658592 187658898 -1620656 - AluSx SINE Alu -4 308 1 550 304 58 31 chr6 187660048 187660290 -1619264 + MIR SINE MIR 1 252 -10 238 294 89 33 chr6 187660502 187660716 -1618838 - L1 LINE L1 -3251 2895 2670 1405 167 181 17 chr6 187660796 187661095 -1618459 + MER7A DNA MER2_type 1 346 0 799 173 37 19 chr6 187661533 187661695 -1617859 - Charlie1b DNA MER1_type 0 523 359 2005 100 3 65 chr6 187661701 187662030 -1617524 + AluSq SINE Alu 1 313 0 450 299 138 9 chr6 187662041 187662272 -1617282 - Charlie1b DNA MER1_type -259 264 4 2043 118 143 0 chr6 187663593 187663908 -1615646 - MER46B DNA MER2_type -1 235 1 667 310 66 52 chr6 187664105 187664605 -1614949 + HAL1b LINE L1 89 595 -753 289 269 55 0 chr6 187665105 187665250 -1614304 + L1M4 LINE L1 2176 2328 -3818 1143 114 3 20 chr6 187665960 187666710 -1612844 + (CATTC)n Satellite Satellite 1 736 0 849 140 0 0 chr6 187666732 187666910 -1612644 + (CATTC)n Satellite Satellite 2 179 0 912 133 0 0 chr6 187666937 187667117 -1612437 + (CATTC)n Satellite Satellite 1 180 0 1128 132 1 3 chr6 187667133 187668351 -1611203 + (CATTC)n Satellite Satellite 1 1214 0 333 156 0 0 chr6 187668364 187668441 -1611113 + (CATTC)n Satellite Satellite 4 80 0 1092 127 0 4 chr6 187668461 187668995 -1610559 + (CATTC)n Satellite Satellite 1 531 0 987 124 3 14 chr6 187669036 187669405 -1610149 + (CATTC)n Satellite Satellite 1 364 0 1140 120 0 0 chr6 187669434 187669798 -1609756 + (CATTC)n Satellite Satellite 1 364 0 1254 72 0 0 chr6 187669810 187670040 -1609514 + (CATTC)n Satellite Satellite 1 230 0 876 160 0 2 chr6 187670062 187670679 -1608875 + (CATTC)n Satellite Satellite 1 615 0 1051 131 3 15 chr6 187670692 187671280 -1608274 + (CATTC)n Satellite Satellite 1 581 0 614 147 43 0 chr6 187671287 187671403 -1608151 + MER67C LTR ERV1 590 710 0 328 139 0 28 chr6 187671599 187671671 -1607883 + (TC)n Simple_repeat Simple_repeat 2 71 0 1999 129 4 4 chr6 187671672 187671951 -1607603 - AluSp SINE Alu -34 279 1 195 267 100 56 chr6 187672011 187672101 -1607453 + L2 LINE L2 2217 2310 -1004 302 245 36 24 chr6 187672204 187672309 -1607245 + MIR SINE MIR 45 156 -72 1877 117 109 14 chr6 187672317 187672684 -1606870 - LTR7 LTR ERV1 0 450 1 3937 185 37 33 chr6 187672696 187673031 -1606523 + L1 LINE L1 4343 4675 -1471 180 0 0 0 chr6 187673031 187673051 -1606503 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3937 185 37 33 chr6 187673051 187673528 -1606026 + L1 LINE L1 4675 5162 -984 777 191 8 8 chr6 187673528 187673659 -1605895 + FLAM_C SINE Alu 1 131 -2 3937 185 37 33 chr6 187673659 187673735 -1605819 + L1 LINE L1 5162 5236 -910 2140 34 0 0 chr6 187674302 187674541 -1605013 - L1PA4 LINE L1 -4 6151 5913 2209 231 64 9 chr6 187674666 187675290 -1604264 - L1MC4 LINE L1 -142 7900 7209 1834 212 12 27 chr6 187675291 187675692 -1603862 - L1MC4 LINE L1 -956 7086 6692 229 284 12 12 chr6 187675821 187675902 -1603652 - L1M2c LINE L1 -4850 1939 1859 23 54 0 0 chr6 187675927 187675964 -1603590 + AT_rich Low_complexity Low_complexity 1 37 0 644 258 133 19 chr6 187676151 187676415 -1603139 + L1ME3 LINE L1 5779 6072 -90 1207 199 94 3 chr6 187676920 187677207 -1602347 - MER33 DNA MER1_type 0 324 12 459 190 60 20 chr6 187677243 187677343 -1602211 + MER5A DNA MER1_type 4 107 -82 906 211 79 0 chr6 187677534 187677724 -1601830 + MER3 DNA MER1_type 4 208 -1 563 138 0 0 chr6 187679175 187679262 -1600292 - AluJo/FRAM SINE Alu -16 296 210 1080 146 0 6 chr6 187679262 187679420 -1600134 + AluSc SINE Alu 136 292 -17 1205 158 54 117 chr6 187679460 187679776 -1599778 + AluJb SINE Alu 2 297 -5 360 173 120 0 chr6 187679897 187679972 -1599582 + AluJ/FLAM SINE Alu 2 85 -217 1246 141 5 34 chr6 187679980 187680186 -1599368 - AluJb SINE Alu -112 200 1 507 248 0 0 chr6 187680245 187680354 -1599200 - AluSg/x SINE Alu -23 287 179 2205 81 3 20 chr6 187680406 187680701 -1598853 - AluSg SINE Alu -20 290 1 485 176 356 27 chr6 187681594 187681782 -1597772 + AluJo SINE Alu 45 294 -18 1030 61 0 30 chr6 187681842 187681974 -1597580 + AluJo SINE Alu 23 150 -162 603 180 7 79 chr6 187681988 187682127 -1597427 - FLAM_C SINE Alu 0 133 5 1997 110 11 0 chr6 187682164 187682437 -1597117 + AluSx SINE Alu 2 277 -35 1001 236 0 5 chr6 187682439 187682647 -1596907 + AluJo SINE Alu 76 282 -30 2111 112 0 33 chr6 187683388 187683721 -1595833 - AluSq SINE Alu 0 313 1 486 195 0 0 chr6 187683941 187684028 -1595526 - AluJ/FRAM SINE Alu 0 312 226 1011 138 0 38 chr6 187684028 187684050 -1595504 - AluSq SINE Alu -160 153 132 2294 118 3 0 chr6 187684050 187684354 -1595200 - AluSp SINE Alu -8 305 1 1011 138 0 38 chr6 187684354 187684490 -1595064 - AluSq SINE Alu -181 132 1 1108 186 0 5 chr6 187684987 187685180 -1594374 - AluJb SINE Alu -4 308 117 379 216 39 49 chr6 187685180 187685282 -1594272 - MER8 DNA MER2_type -136 103 3 1668 180 0 13 chr6 187685393 187685693 -1593861 + AluJo SINE Alu 1 296 -16 472 239 9 18 chr6 187685931 187686040 -1593514 + FLAM_C SINE Alu 11 118 -25 254 277 12 12 chr6 187686071 187686154 -1593400 - L1ME LINE L1 -556 5565 5483 1470 201 42 11 chr6 187686288 187686572 -1592982 - AluJb SINE Alu -19 293 1 380 196 0 135 chr6 187686575 187686723 -1592831 + LTR41 LTR ERVL 640 767 -6 2306 145 64 19 chr6 187686994 187687414 -1592140 + MER1A DNA MER1_type 1 439 -90 670 236 57 6 chr6 187687669 187687826 -1591728 - AluJo SINE Alu -139 173 9 1072 191 0 5 chr6 187688404 187688592 -1590962 - AluJb SINE Alu -9 303 117 390 206 39 49 chr6 187688592 187688694 -1590860 - MER8 DNA MER2_type -136 103 3 1711 173 0 13 chr6 187688803 187689103 -1590451 + AluJo SINE Alu 1 296 -16 482 227 7 71 chr6 187689339 187689480 -1590074 + AluJo SINE Alu 11 142 -170 255 256 12 24 chr6 187689480 187689562 -1589992 - L1ME LINE L1 -558 5563 5483 1493 198 41 10 chr6 187689687 187689980 -1589574 - AluJb SINE Alu -10 302 1 375 196 0 135 chr6 187689983 187690131 -1589423 + LTR41 LTR ERVL 640 767 -6 2359 138 64 19 chr6 187690401 187690821 -1588733 + MER1A DNA MER1_type 1 439 -90 664 231 0 8 chr6 187691076 187691210 -1588344 - AluJo SINE Alu -140 172 40 1072 191 0 5 chr6 187691810 187691998 -1587556 - AluJb SINE Alu -9 303 117 356 226 39 49 chr6 187691998 187692100 -1587454 - MER8 DNA MER2_type -136 103 3 1692 177 0 13 chr6 187692211 187692511 -1587043 + AluJo SINE Alu 1 296 -16 472 239 9 18 chr6 187692747 187692856 -1586698 + FLAM_C SINE Alu 11 118 -25 254 277 12 12 chr6 187692887 187692970 -1586584 - L1ME LINE L1 -556 5565 5483 1432 204 42 11 chr6 187693104 187693388 -1586166 - AluJb SINE Alu -19 293 1 375 203 0 135 chr6 187693391 187693539 -1586015 + LTR41 LTR ERVL 640 767 -6 2208 110 0 0 chr6 187695473 187695772 -1583782 + AluSg SINE Alu 1 299 -11 458 155 0 0 chr6 187698853 187698937 -1580617 - AluSq SINE Alu 0 313 230 937 154 20 7 chr6 187698939 187699088 -1580466 - AluSq SINE Alu -161 151 1 905 254 21 15 chr6 187699091 187699526 -1580028 - L1M2 LINE L1 -4226 2563 2037 2152 127 3 22 chr6 187699526 187699841 -1579713 - AluSg SINE Alu -1 309 1 905 254 21 15 chr6 187699841 187699934 -1579620 - L1M2 LINE L1 -4752 2037 1946 707 158 0 0 chr6 187699949 187700050 -1579504 - FLAM_C SINE Alu -40 103 3 729 153 0 0 chr6 187700052 187700163 -1579391 + FLAM_C SINE Alu 27 137 -6 1899 109 3 65 chr6 187700165 187700458 -1579096 + AluSx SINE Alu 37 311 -1 271 298 38 76 chr6 187700821 187700946 -1578608 + L2 LINE L2 3084 3197 -116 2275 113 0 0 chr6 187700946 187701246 -1578308 + AluSq SINE Alu 1 300 -13 271 298 38 76 chr6 187701246 187701358 -1578196 + L2 LINE L2 3197 3312 -1 1996 133 0 0 chr6 187701790 187702060 -1577494 + AluSx SINE Alu 1 270 -42 359 246 109 36 chr6 187702184 187702294 -1577260 + L2 LINE L2 3195 3312 -1 21 36 0 0 chr6 187702681 187702709 -1576845 + AT_rich Low_complexity Low_complexity 1 28 0 1375 208 35 32 chr6 187702836 187703605 -1575949 - L1M4c LINE L1 -4071 2313 1451 932 139 20 25 chr6 187703606 187703807 -1575747 - L1MA5 LINE L1 0 6300 6101 321 257 87 132 chr6 187703851 187704267 -1575287 - L1M4 LINE L1 -2943 3203 2807 1951 169 13 0 chr6 187704971 187705272 -1574282 - AluJb SINE Alu -7 305 1 463 384 32 24 chr6 187705435 187705994 -1573560 - L2 LINE L2 -2 3270 2707 * 526 263 0 8 chr6 187705992 187706110 -1573444 - L2 LINE L2 0 3313 3197 338 161 55 41 chr6 187708001 187708283 -1571271 + (TAGA)n Simple_repeat Simple_repeat 1 285 0 236 245 0 0 chr6 187708606 187708655 -1570899 + CT-rich Low_complexity Low_complexity 3 51 0 336 254 66 0 chr6 187710197 187710319 -1569235 - L1ME1 LINE L1 -18 6148 6019 1198 259 64 11 chr6 187710495 187711043 -1568511 - L1ME1 LINE L1 -601 5758 5171 27 73 0 0 chr6 187711089 187711144 -1568410 + AT_rich Low_complexity Low_complexity 1 55 0 181 259 210 62 chr6 187711219 187711381 -1568173 + L2 LINE L2 2711 2896 -418 2568 44 7 0 chr6 187711506 187711803 -1567751 - AluY SINE Alu -12 299 1 3343 155 38 8 chr6 187712481 187713094 -1566460 + MER39B LTR ERV1 1 631 -22 538 224 6 6 chr6 187713566 187713740 -1565814 + GA-rich Low_complexity Low_complexity 2 175 0 617 297 99 52 chr6 187714182 187714757 -1564797 + L1MC4a LINE L1 5936 6530 -1278 300 315 55 31 chr6 187714927 187715054 -1564500 + L1MD3 LINE L1 6539 6668 -1327 228 299 0 13 chr6 187715590 187715667 -1563887 + L1MD3 LINE L1 6545 6620 -1375 1654 240 67 21 chr6 187715742 187716179 -1563375 + L1MC3 LINE L1 6503 6969 -816 327 65 0 0 chr6 187716179 187716225 -1563329 + (CA)n Simple_repeat Simple_repeat 1 46 0 1654 240 67 21 chr6 187716225 187716308 -1563246 + L1MC3 LINE L1 6969 7047 -738 1153 94 0 0 chr6 187716313 187716491 -1563063 + AluY SINE Alu 134 311 0 559 230 75 52 chr6 187716495 187716566 -1562988 + L1MD3 LINE L1 7068 7136 -859 2201 121 23 3 chr6 187716566 187716873 -1562681 + AluSq SINE Alu 1 313 0 559 230 75 52 chr6 187716873 187717014 -1562540 + L1MD3 LINE L1 7136 7285 -710 265 213 263 0 chr6 187717016 187717096 -1562458 + MLT1F1 LTR MaLR 25 125 -442 1141 256 24 6 chr6 187717096 187717436 -1562118 + L1MD3 LINE L1 7406 7751 -244 390 277 8 8 chr6 187718989 187719119 -1560435 + L1MD3 LINE L1 7832 7961 -34 24 32 0 0 chr6 187719119 187719150 -1560404 + AT_rich Low_complexity Low_complexity 1 31 0 2381 91 0 0 chr6 187719161 187719457 -1560097 + AluSg SINE Alu 2 297 -13 440 320 3 14 chr6 187719721 187720084 -1559470 + (TG)n Simple_repeat Simple_repeat 1 358 0 327 313 0 15 chr6 187720100 187720231 -1559323 + (TG)n Simple_repeat Simple_repeat 1 129 0 * 347 311 11 27 chr6 187720182 187720365 -1559189 + (TATG)n Simple_repeat Simple_repeat 1 180 0 * 512 279 0 17 chr6 187720266 187720445 -1559109 + (TG)n Simple_repeat Simple_repeat 1 176 0 259 333 17 23 chr6 187720392 187720566 -1558988 + (TATG)n Simple_repeat Simple_repeat 4 176 0 * 249 234 0 16 chr6 187720998 187721062 -1558492 - Tigger4(Zombi) DNA MER2_type -11 2720 2658 217 263 211 11 chr6 187721310 187721405 -1558149 - MIR SINE MIR -55 153 40 1770 148 99 0 chr6 187721524 187721888 -1557666 - Ricksha DNA DNA -9 3242 2843 670 111 0 0 chr6 187721886 187721985 -1557569 - Ricksha DNA DNA -1947 99 1 * 435 287 22 33 chr6 187722075 187722256 -1557298 + L1ME LINE L1 5603 5781 -340 197 316 138 35 chr6 187722628 187722802 -1556752 + MIR3 SINE MIR 15 206 -2 616 187 41 0 chr6 187724552 187724675 -1554879 - AluJb SINE Alu -11 301 174 4827 184 37 13 chr6 187724740 187725421 -1554133 - L1MA4 LINE L1 0 6300 5637 2289 80 3 32 chr6 187725421 187725734 -1553820 - AluSc SINE Alu -5 304 1 2162 125 0 3 chr6 187725737 187726041 -1553513 - AluSg SINE Alu -7 303 1 4827 184 37 13 chr6 187726041 187726860 -1552694 - L1MA4 LINE L1 -664 5636 4763 1702 189 3 0 chr6 187726875 187727161 -1552393 + AluJo SINE Alu 13 299 -13 1198 150 0 109 chr6 187727291 187727371 -1552183 + AluJb SINE Alu 68 155 -157 1733 148 35 29 chr6 187727371 187727681 -1551873 + AluSx SINE Alu 1 312 0 1198 150 0 109 chr6 187727681 187727866 -1551688 + AluJb SINE Alu 155 304 -8 1827 171 7 16 chr6 187727877 187728182 -1551372 + AluSx SINE Alu 1 302 -10 1786 109 39 3 chr6 187728184 187728468 -1551086 + AluSq SINE Alu 1 294 -19 352 272 152 33 chr6 187728469 187728653 -1550901 - L1MC4a LINE L1 -1495 6313 6108 1634 171 3 37 chr6 187728774 187728937 -1550617 - AluJo SINE Alu -21 291 141 2097 141 0 7 chr6 187728937 187729243 -1550311 - AluSx SINE Alu -8 304 1 1634 171 3 37 chr6 187729243 187729378 -1550176 - AluJo SINE Alu -171 141 3 313 213 101 41 chr6 187729421 187729590 -1549964 - Charlie7 DNA MER1_type -26 2586 2408 2120 114 3 20 chr6 187729606 187729905 -1549649 + AluSq SINE Alu 1 294 -19 985 153 0 0 chr6 187729905 187730049 -1549505 + AluSg/x SINE Alu 135 278 -34 2146 104 31 0 chr6 187730323 187730611 -1548943 + AluSg SINE Alu 1 297 -13 1988 176 77 17 chr6 187730841 187731245 -1548309 - MSTA LTR MaLR 0 428 1 285 284 15 0 chr6 187731252 187731319 -1548235 - L2 LINE L2 -69 3203 3136 298 207 73 0 chr6 187731772 187731854 -1547700 + L1PA8 LINE L1 5946 6033 -139 * 330 214 61 10 chr6 187731849 187731947 -1547607 + L1PA8 LINE L1 5946 6048 -124 315 195 73 0 chr6 187731926 187732008 -1547546 + L1PA8 LINE L1 5946 6033 -139 * 328 195 73 0 chr6 187732003 187732085 -1547469 + L1PA8 LINE L1 5946 6033 -139 309 224 61 10 chr6 187732080 187732178 -1547376 + L1PA8 LINE L1 5946 6048 -124 * 327 195 73 0 chr6 187732157 187732239 -1547315 + L1PA8 LINE L1 5946 6033 -139 * 328 171 85 12 chr6 187732234 187732316 -1547238 + L1PA8 LINE L1 5946 6033 -139 * 346 183 73 0 chr6 187732311 187732393 -1547161 + L1PA8 LINE L1 5946 6033 -139 * 368 194 61 10 chr6 187732388 187732486 -1547068 + L1PA8 LINE L1 5946 6048 -124 346 214 61 10 chr6 187732465 187732563 -1546991 + L1PA8 LINE L1 5946 6048 -124 * 363 204 61 10 chr6 187732542 187732640 -1546914 + L1PA8 LINE L1 5946 6048 -124 350 183 73 0 chr6 187732619 187732701 -1546853 + L1PA8 LINE L1 5946 6033 -139 * 334 195 73 0 chr6 187732696 187732778 -1546776 + L1PA8 LINE L1 5946 6033 -139 * 334 195 73 0 chr6 187732773 187732855 -1546699 + L1PA8 LINE L1 5946 6033 -139 289 210 74 0 chr6 187732850 187732931 -1546623 + L1PA8 LINE L1 5946 6032 -140 * 339 224 61 10 chr6 187732927 187733025 -1546529 + L1PA8 LINE L1 5946 6048 -124 * 347 214 61 10 chr6 187733004 187733102 -1546452 + L1PA8 LINE L1 5946 6048 -124 * 348 183 73 0 chr6 187733081 187733163 -1546391 + L1PA8 LINE L1 5946 6033 -139 328 171 85 12 chr6 187733287 187733369 -1546185 - L1PA8 LINE L1 -139 6033 5946 324 195 73 0 chr6 187733364 187733446 -1546108 - L1PA8 LINE L1 -139 6033 5946 * 346 183 73 0 chr6 187733441 187733523 -1546031 - L1PA8 LINE L1 -139 6033 5946 314 198 86 0 chr6 187733518 187733599 -1545955 - L1PA8 LINE L1 -139 6033 5946 * 357 204 61 10 chr6 187733578 187733676 -1545878 - L1PA8 LINE L1 -124 6048 5946 315 195 73 0 chr6 187733671 187733753 -1545801 - L1PA8 LINE L1 -139 6033 5946 * 357 204 61 10 chr6 187733732 187733830 -1545724 - L1PA8 LINE L1 -124 6048 5946 341 183 73 0 chr6 187733825 187733907 -1545647 - L1PA8 LINE L1 -139 6033 5946 * 357 204 61 10 chr6 187733886 187733984 -1545570 - L1PA8 LINE L1 -124 6048 5946 341 183 73 0 chr6 187733979 187734061 -1545493 - L1PA8 LINE L1 -139 6033 5946 * 348 214 61 10 chr6 187734040 187734138 -1545416 - L1PA8 LINE L1 -124 6048 5946 337 214 61 10 chr6 187734117 187734215 -1545339 - L1PA8 LINE L1 -124 6048 5946 * 366 194 61 10 chr6 187734194 187734292 -1545262 - L1PA8 LINE L1 -124 6048 5946 337 214 61 10 chr6 187734271 187734369 -1545185 - L1PA8 LINE L1 -124 6048 5946 * 324 195 73 0 chr6 187734364 187734446 -1545108 - L1PA8 LINE L1 -139 6033 5946 * 350 183 73 0 chr6 187734441 187734523 -1545031 - L1PA8 LINE L1 -139 6033 5946 341 183 73 0 chr6 187734518 187734600 -1544954 - L1PA8 LINE L1 -139 6033 5946 * 337 214 61 10 chr6 187734579 187734677 -1544877 - L1PA8 LINE L1 -124 6048 5946 * 333 195 73 0 chr6 187734672 187734754 -1544800 - L1PA8 LINE L1 -139 6033 5946 * 357 214 61 10 chr6 187734733 187734831 -1544723 - L1PA8 LINE L1 -124 6048 5946 354 204 61 10 chr6 187734810 187734908 -1544646 - L1PA8 LINE L1 -124 6048 5946 * 328 224 61 10 chr6 187734887 187734985 -1544569 - L1PA8 LINE L1 -124 6048 5946 * 334 195 73 0 chr6 187734980 187735062 -1544492 - L1PA8 LINE L1 -139 6033 5946 315 195 73 0 chr6 187735057 187735139 -1544415 - L1PA8 LINE L1 -139 6033 5946 * 330 214 61 10 chr6 187735118 187735216 -1544338 - L1PA8 LINE L1 -124 6048 5946 363 171 73 0 chr6 187735376 187735458 -1544096 - L1PA8 LINE L1 -139 6033 5946 * 375 194 61 10 chr6 187735437 187735535 -1544019 - L1PA8 LINE L1 -124 6048 5946 375 194 61 10 chr6 187735514 187735612 -1543942 - L1PA8 LINE L1 -124 6048 5946 346 214 61 10 chr6 187735591 187735689 -1543865 - L1PA8 LINE L1 -124 6048 5946 * 327 185 86 0 chr6 187735684 187735765 -1543789 - L1PA8 LINE L1 -139 6033 5946 * 350 183 73 0 chr6 187735760 187735842 -1543712 - L1PA8 LINE L1 -139 6033 5946 * 356 196 72 10 chr6 187735821 187735918 -1543636 - L1PA8 LINE L1 -124 6048 5946 343 194 71 20 chr6 187735897 187735995 -1543559 - L1PA8 LINE L1 -124 6048 5946 * 346 183 73 0 chr6 187735990 187736072 -1543482 - L1PA8 LINE L1 -139 6033 5946 334 195 73 0 chr6 187736067 187736149 -1543405 - L1PA8 LINE L1 -139 6033 5946 * 320 207 73 0 chr6 187736144 187736226 -1543328 - L1PA8 LINE L1 -139 6033 5946 * 327 185 86 0 chr6 187736221 187736302 -1543252 - L1PA8 LINE L1 -139 6033 5946 * 334 195 73 0 chr6 187736297 187736379 -1543175 - L1PA8 LINE L1 -139 6033 5946 300 206 76 22 chr6 187736363 187736455 -1543099 - L1PA10 LINE L1 -126 6042 5946 * 375 194 61 10 chr6 187736434 187736532 -1543022 - L1PA8 LINE L1 -124 6048 5946 363 204 61 10 chr6 187736511 187736609 -1542945 - L1PA8 LINE L1 -124 6048 5946 * 318 224 61 10 chr6 187736588 187736686 -1542868 - L1PA8 LINE L1 -124 6048 5946 * 350 184 71 20 chr6 187736665 187736763 -1542791 - L1PA8 LINE L1 -124 6048 5946 314 198 86 0 chr6 187736758 187736839 -1542715 - L1PA8 LINE L1 -139 6033 5946 * 363 171 73 0 chr6 187736834 187736916 -1542638 - L1PA8 LINE L1 -139 6033 5946 * 375 194 61 10 chr6 187736895 187736993 -1542561 - L1PA8 LINE L1 -124 6048 5946 343 214 61 10 chr6 187736972 187737070 -1542484 - L1PA8 LINE L1 -124 6048 5946 * 321 185 86 0 chr6 187737065 187737146 -1542408 - L1PA8 LINE L1 -139 6033 5946 * 316 224 61 10 chr6 187737125 187737223 -1542331 - L1PA8 LINE L1 -124 6048 5946 * 363 171 73 0 chr6 187737218 187737300 -1542254 - L1PA8 LINE L1 -139 6033 5946 342 214 61 10 chr6 187737279 187737377 -1542177 - L1PA8 LINE L1 -124 6048 5946 * 334 224 61 10 chr6 187737356 187737454 -1542100 - L1PA8 LINE L1 -124 6048 5946 * 353 192 61 20 chr6 187737433 187737532 -1542022 - L1PA8 LINE L1 -124 6048 5946 * 354 204 61 10 chr6 187737511 187737609 -1541945 - L1PA8 LINE L1 -124 6048 5946 327 214 61 10 chr6 187737588 187737686 -1541868 - L1PA8 LINE L1 -124 6048 5946 * 350 214 61 10 chr6 187737665 187737763 -1541791 - L1PA8 LINE L1 -124 6048 5946 2217 105 8 14 chr6 187737774 187738136 -1541418 - L1PA8A LINE L1 -120 6011 5646 331 140 0 0 chr6 187738256 187738306 -1541248 - Alu SINE Alu -253 50 1 842 180 248 12 chr6 187738772 187739095 -1540459 - Charlie1a DNA MER1_type 0 1455 1057 1334 161 0 14 chr6 187739130 187739348 -1540206 - AluJb SINE Alu -11 301 87 1083 138 185 4 chr6 187739352 187739612 -1539942 - Charlie1a DNA MER1_type -541 914 608 1066 210 216 14 chr6 187742052 187742254 -1537300 - Charlie1a DNA MER1_type -2249 512 352 2068 148 0 3 chr6 187742254 187742551 -1537003 - AluJb SINE Alu -16 296 1 1066 210 216 14 chr6 187742551 187742719 -1536835 - Charlie1a DNA MER1_type -2409 352 67 26 0 0 0 chr6 187742824 187742850 -1536704 + AT_rich Low_complexity Low_complexity 1 26 0 1971 126 13 35 chr6 187743238 187743548 -1536006 - AluSc SINE Alu -6 303 1 240 308 45 26 chr6 187745097 187745253 -1534301 + L1ME LINE L1 5669 5827 -294 274 202 77 58 chr6 187745444 187745548 -1534006 - LTR33 LTR ERVL 0 521 416 568 345 6 0 chr6 187746190 187746364 -1533190 - HERV16 LTR ERVL -1909 3087 2913 1602 207 6 3 chr6 187746368 187746730 -1532824 + L1 LINE L1 4697 5059 -1087 1822 94 35 35 chr6 187746833 187747120 -1532434 - AluSx SINE Alu -23 289 3 242 29 29 0 chr6 187747191 187747226 -1532328 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 2101 101 4 0 chr6 187748667 187748970 -1530584 - AluSg SINE Alu 0 304 1 410 313 138 18 chr6 187749792 187750016 -1529538 - L1ME4a LINE L1 -5 6116 5866 1030 214 126 81 chr6 187750381 187750848 -1528706 - MLT1H LTR MaLR 0 549 62 2315 158 17 17 chr6 187752393 187752578 -1526976 - L1PA16 LINE L1 -6 6160 5976 324 0 0 0 chr6 187752578 187752614 -1526940 + (TG)n Simple_repeat Simple_repeat 1 36 0 1750 152 30 0 chr6 187752614 187752883 -1526671 - AluSg SINE Alu -33 277 1 2315 158 17 17 chr6 187752883 187753108 -1526446 - L1PA16 LINE L1 -188 5978 5749 199 345 19 78 chr6 187753181 187753387 -1526167 - L2 LINE L2 -1560 1754 1561 332 277 247 6 chr6 187753749 187753915 -1525639 + MIR SINE MIR 51 256 -6 197 154 128 0 chr6 187754679 187754718 -1524836 + MIR SINE MIR 211 254 -8 4609 130 10 1 chr6 187754947 187755657 -1523897 - L1PB1 LINE L1 0 6151 5436 200 231 231 0 chr6 187756112 187756164 -1523390 + MIR SINE MIR 88 151 -111 204 240 40 0 chr6 187756498 187756548 -1523006 + MIR SINE MIR 96 147 -61 202 217 22 0 chr6 187757013 187757059 -1522495 + MIR SINE MIR 103 150 -58 1991 151 0 30 chr6 187757589 187757894 -1521660 + AluSx SINE Alu 2 297 -15 282 327 146 12 chr6 187757911 187758076 -1521478 + MIR SINE MIR 48 234 -28 1101 123 7 0 chr6 187758819 187758973 -1520581 + 7SLRNA srpRNA srpRNA 95 249 -71 980 271 97 32 chr6 187760215 187760646 -1518908 - MLT1E LTR MaLR -132 461 3 259 201 82 104 chr6 187761548 187761742 -1517812 - L1ME4a LINE L1 -58 6063 5875 2312 99 3 19 chr6 187761742 187762056 -1517498 + AluY SINE Alu 1 309 -2 259 201 82 104 chr6 187762056 187762130 -1517424 - L1ME4a LINE L1 -246 5875 5801 226 247 75 11 chr6 187762275 187762368 -1517186 + L1P LINE L1 4392 4490 -1656 23 0 0 0 chr6 187762435 187762458 -1517096 + AT_rich Low_complexity Low_complexity 1 23 0 338 206 0 0 chr6 187762460 187762523 -1517031 + AluS SINE Alu 2 64 -239 1038 198 0 0 chr6 187762523 187762690 -1516864 + AluJb SINE Alu 132 298 -14 21 0 0 0 chr6 187762747 187762768 -1516786 + AT_rich Low_complexity Low_complexity 1 21 0 860 130 0 0 chr6 187763074 187763189 -1516365 + FLAM_C SINE Alu 1 115 -28 1719 150 3 21 chr6 187770965 187771252 -1508302 - AluJo SINE Alu -21 291 10 2360 177 13 0 chr6 187772094 187772569 -1506985 - L1 LINE L1 -2369 3777 3297 2034 145 3 0 chr6 187772600 187772890 -1506664 - AluSg SINE Alu -19 291 1 1966 163 0 7 chr6 187772907 187773214 -1506340 - AluJo SINE Alu -1 311 7 309 227 144 30 chr6 187773218 187773350 -1506204 - L1MD1 LINE L1 -288 5954 5808 649 270 87 12 chr6 187773380 187773621 -1505933 + L1ME LINE L1 5522 5780 -382 193 281 0 47 chr6 187773936 187774000 -1505554 - MIR SINE MIR -8 254 194 1282 166 21 29 chr6 187774001 187774277 -1505277 - AluJo SINE Alu 0 317 44 357 247 17 144 chr6 187774277 187774451 -1505103 - MIR SINE MIR -64 198 47 354 288 117 9 chr6 187775742 187775853 -1503701 - MIR SINE MIR -128 134 12 2373 33 0 0 chr6 187776452 187776725 -1502829 - AluY SINE Alu -4 307 35 534 137 0 26 chr6 187776828 187776945 -1502609 + (TTCC)n Simple_repeat Simple_repeat 2 115 0 1537 207 4 4 chr6 187777058 187777333 -1502221 - AluJo SINE Alu -37 275 1 766 228 7 0 chr6 187778079 187778224 -1501330 - MER5A DNA MER1_type -30 159 14 2239 120 0 0 chr6 187778549 187778865 -1500689 - AluSx SINE Alu 0 316 1 238 218 0 18 chr6 187779182 187779237 -1500317 + (CATA)n Simple_repeat Simple_repeat 2 55 0 214 182 23 0 chr6 187779569 187779613 -1499941 + C-rich Low_complexity Low_complexity 3 47 0 827 161 0 6 chr6 187781164 187781326 -1498228 + CT-rich Low_complexity Low_complexity 4 164 0 332 240 140 73 chr6 187781655 187781834 -1497720 + MIR SINE MIR 2 192 -70 279 325 126 7 chr6 187782780 187782931 -1496623 + MIR3 SINE MIR 31 199 -9 330 256 68 17 chr6 187782938 187783055 -1496499 + L2 LINE L2 3188 3310 -3 1848 210 40 50 chr6 187784026 187784569 -1494985 - LTR57-int LTR ERVL -4496 847 310 8207 200 76 13 chr6 187784981 187785904 -1493650 + L1 LINE L1 2530 3394 -2752 1984 132 44 0 chr6 187785904 187786199 -1493355 + AluSx SINE Alu 1 308 -4 8207 200 76 13 chr6 187786199 187787443 -1492111 + L1 LINE L1 3394 4832 -1314 238 229 16 0 chr6 187787464 187787525 -1492029 - L1ME4a LINE L1 -75 6046 5985 23 0 0 0 chr6 187787615 187787638 -1491916 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr6 187787673 187787706 -1491848 + AT_rich Low_complexity Low_complexity 1 33 0 775 229 131 23 chr6 187787844 187788058 -1491496 + MIR SINE MIR 18 254 -8 382 171 57 0 chr6 187788615 187788685 -1490869 + MER58A DNA MER1_type 3 76 -31 1013 234 37 0 chr6 187788707 187788921 -1490633 + MER58A DNA MER1_type 3 224 0 1465 57 36 5 chr6 187789474 187789668 -1489886 - L1PA5 LINE L1 -16 6138 5939 1270 296 39 9 chr6 187791408 187792011 -1487543 - L2 LINE L2 -33 3280 2659 1046 170 22 40 chr6 187793184 187793407 -1486147 + MER20 DNA MER1_type 1 219 0 283 279 23 0 chr6 187793513 187793599 -1485955 + (TGGA)n Simple_repeat Simple_repeat 1 88 0 4817 209 75 43 chr6 187796030 187797605 -1481949 + L1 LINE L1 12 1681 -5884 3089 160 38 192 chr6 187797602 187798145 -1481409 + L1 LINE L1 2669 3101 -4464 * 774 175 0 0 chr6 187798145 187798265 -1481289 + AluSq/x SINE Alu 1 120 -193 3089 160 38 192 chr6 187798265 187798685 -1480869 + L1 LINE L1 3101 3584 -3981 1005 138 7 124 chr6 187798682 187798766 -1480788 + L1 LINE L1 4931 5023 -2542 * 2205 42 0 0 chr6 187798766 187799061 -1480493 + L1PA3 LINE L1 5878 6172 0 1005 138 7 124 chr6 187799061 187799085 -1480469 + L1 LINE L1 5023 5048 -2517 2126 52 7 0 chr6 187799085 187799355 -1480199 + L1PA5 LINE L1 5877 6148 -6 1005 138 7 124 chr6 187799355 187799519 -1480035 + L1 LINE L1 5048 5173 -2392 * 3818 172 14 20 chr6 187799518 187800326 -1479228 + L1 LINE L1 5947 6749 -816 * 5112 164 33 3 chr6 187800323 187801433 -1478121 + L1MA4 LINE L1 5159 6297 -3 28 48 0 0 chr6 187801433 187801475 -1478079 + AT_rich Low_complexity Low_complexity 1 42 0 399 231 19 29 chr6 187801543 187801647 -1477907 + MER5B DNA MER1_type 76 178 0 282 297 90 9 chr6 187801746 187801857 -1477697 + L2 LINE L2 3193 3312 -1 1497 155 0 5 chr6 187802810 187803029 -1476525 + AluSx SINE Alu 3 220 -92 26 50 0 0 chr6 187803093 187803133 -1476421 + AT_rich Low_complexity Low_complexity 1 40 0 30 59 0 0 chr6 187803257 187803308 -1476246 + AT_rich Low_complexity Low_complexity 1 51 0 27 0 0 0 chr6 187803699 187803726 -1475828 + AT_rich Low_complexity Low_complexity 1 27 0 305 293 0 0 chr6 187803941 187804016 -1475538 - L2 LINE L2 -1010 2304 2230 1414 144 40 5 chr6 187804271 187804493 -1475061 + AluSx SINE Alu 1 230 -82 419 0 20 0 chr6 187804494 187804545 -1475009 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 198 0 0 0 chr6 187804546 187804568 -1474986 + (TA)n Simple_repeat Simple_repeat 2 23 0 722 220 72 22 chr6 187804874 187805097 -1474457 - MLT1D LTR MaLR -271 234 1 632 182 33 8 chr6 187805653 187805774 -1473780 - FLAM_C SINE Alu -19 124 1 230 265 15 0 chr6 187805846 187805914 -1473640 + MER112 DNA MER1_type 7 75 -185 923 343 97 39 chr6 187805973 187806601 -1472953 + L2 LINE L2 1501 2182 -1132 2801 10 0 0 chr6 187806601 187806908 -1472646 - AluYa5 SINE Alu -4 307 1 923 343 97 39 chr6 187806908 187807046 -1472508 + L2 LINE L2 2182 2311 -1003 229 356 36 0 chr6 187807043 187807173 -1472381 - MIR SINE MIR -4 204 65 * 2394 82 0 0 chr6 187809102 187809396 -1470158 + AluY SINE Alu 1 294 -17 198 0 0 0 chr6 187810291 187810313 -1469241 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr6 187811121 187811143 -1468411 + (A)n Simple_repeat Simple_repeat 1 22 0 228 335 28 35 chr6 187813053 187813195 -1466359 - MIR SINE MIR -63 145 21 495 269 72 26 chr6 187814071 187814376 -1465178 + L1MC4a LINE L1 5691 6009 -1799 707 153 23 15 chr6 187815109 187815379 -1464175 + CT-rich Low_complexity Low_complexity 1 272 0 3508 186 71 61 chr6 187815480 187815563 -1463991 + LTR49-int LTR ERV1 786 867 -4728 387 0 0 0 chr6 187815563 187815606 -1463948 + (TG)n Simple_repeat Simple_repeat 2 44 0 3508 186 71 61 chr6 187815606 187816362 -1463192 + LTR49-int LTR ERV1 867 1614 -3981 1299 257 3 10 chr6 187816362 187816662 -1462892 - AluJo SINE Alu -14 298 1 3508 186 71 61 chr6 187816662 187817347 -1462207 + LTR49-int LTR ERV1 1614 2476 -3119 1969 162 118 3 chr6 187817393 187817775 -1461779 + MSTB LTR MaLR 1 426 0 706 161 30 50 chr6 187817820 187818019 -1461535 + LTR49-int LTR ERV1 3536 3730 -2868 686 212 24 52 chr6 187818100 187818285 -1461269 + LTR49-int LTR ERV1 3732 3921 -2410 1416 176 108 7 chr6 187818285 187818563 -1460991 - AluJb SINE Alu -6 306 1 686 212 24 52 chr6 187818563 187818832 -1460722 + LTR49-int LTR ERV1 3921 4196 -2135 336 218 81 0 chr6 187818815 187818939 -1460615 + LTR49-int LTR ERV1 2890 3023 -1913 * 1462 214 30 0 chr6 187818939 187819205 -1460349 + AluJo SINE Alu 1 274 -38 207 0 0 0 chr6 187819221 187819244 -1460310 + (TC)n Simple_repeat Simple_repeat 2 24 0 683 132 0 53 chr6 187819245 187819435 -1460119 + (TA)n Simple_repeat Simple_repeat 1 180 0 348 223 35 25 chr6 187819490 187819690 -1459864 + LTR49-int LTR ERV1 3082 3188 -1748 2515 170 76 21 chr6 187819937 187820216 -1459338 + LTR64 LTR ERVK 1 263 -295 8368 52 1 0 chr6 187820216 187821180 -1458374 - LTR5 LTR ERVK -4 965 1 2515 170 76 21 chr6 187821180 187821429 -1458125 + LTR64 LTR ERVK 263 558 0 373 298 19 38 chr6 187821965 187822123 -1457431 - HERV16 LTR ERVL -1005 4649 4495 847 254 9 0 chr6 187822258 187822478 -1457076 - MLT2F LTR ERVL 0 663 442 778 234 73 15 chr6 187822550 187822755 -1456799 - MLT2F LTR ERVL -426 237 21 1771 200 16 3 chr6 187822765 187823150 -1456404 - L1 LINE L1 -1179 4967 4578 450 114 13 0 chr6 187823148 187823227 -1456327 - L1 LINE L1 -1798 4348 4269 * 427 264 88 34 chr6 187823222 187823413 -1456141 - L1M1 LINE L1 -3951 3614 3400 * 2306 83 0 7 chr6 187823413 187823715 -1455839 - AluY SINE Alu -11 300 1 427 264 88 34 chr6 187823715 187823819 -1455735 - L1M1 LINE L1 -4165 3400 3303 8185 116 11 16 chr6 187824451 187825755 -1453799 - HSMAR2 DNA Mariner -3 1299 3 458 273 93 0 chr6 187825886 187826047 -1453507 - LTR33 LTR ERVL -8 513 338 257 50 0 25 chr6 187826064 187826104 -1453450 + (TG)n Simple_repeat Simple_repeat 2 40 0 1470 187 55 58 chr6 187826312 187826729 -1452825 + MER31B LTR ERV1 1 416 -50 383 227 61 15 chr6 187827535 187827667 -1451887 + MLT1C LTR MaLR 2 139 -328 3671 203 77 10 chr6 187829019 187829398 -1450156 + L1MA9 LINE L1 5367 5719 -593 192 40 0 0 chr6 187829398 187829423 -1450131 + (TG)n Simple_repeat Simple_repeat 2 26 0 3671 203 77 10 chr6 187829423 187829923 -1449631 + L1MA9 LINE L1 5719 6305 -7 261 314 76 0 chr6 187830433 187830538 -1449016 + MER5C DNA MER1_type 12 124 -200 277 313 128 28 chr6 187830787 187830966 -1448588 + MIR SINE MIR 7 203 -59 5188 138 26 6 chr6 187831482 187832421 -1447133 + L1PB3 LINE L1 5200 6154 0 1042 289 64 17 chr6 187832535 187833043 -1446511 - HERV16 LTR ERVL -2661 2824 2341 1880 156 30 0 chr6 187833043 187833338 -1446216 + AluSx SINE Alu 1 304 -8 1042 289 64 17 chr6 187833338 187833766 -1445788 - HERV16 LTR ERVL -3144 2341 1801 455 232 152 76 chr6 187834096 187834320 -1445234 + MIR SINE MIR 21 261 -1 347 274 59 75 chr6 187834863 187835049 -1444505 + MIR3 SINE MIR 20 202 -6 1989 114 3 28 chr6 187835184 187835510 -1444044 + AluSx SINE Alu 1 319 0 253 389 36 29 chr6 187838279 187838418 -1441136 - MIR3 SINE MIR -48 160 21 1503 172 168 69 chr6 187838436 187838487 -1441067 - MLT1D LTR MaLR -3 502 457 225 0 0 0 chr6 187838487 187838512 -1441042 + (CA)n Simple_repeat Simple_repeat 1 25 0 1503 172 168 69 chr6 187838512 187838907 -1440647 - MLT1D LTR MaLR -48 457 12 275 321 123 0 chr6 187839232 187839338 -1440216 - L2 LINE L2 -1 3312 3194 226 333 11 32 chr6 187839683 187839776 -1439778 - L2 LINE L2 0 3313 3223 2113 130 0 3 chr6 187841473 187841774 -1437780 - AluSx SINE Alu -12 300 1 258 300 79 42 chr6 187841825 187842065 -1437489 - L3b LINE CR1 -225 1358 1110 2362 76 34 0 chr6 187843079 187843407 -1436147 - L1PA13 LINE L1 0 6163 5825 2577 192 9 29 chr6 187845454 187846006 -1433548 + L1MD3 LINE L1 7455 7995 0 281 313 66 66 chr6 187846208 187846390 -1433164 + MIR3 SINE MIR 21 202 -6 1296 227 141 54 chr6 187846407 187846997 -1432557 + LTR50 LTR ERVL 24 664 -131 1121 121 55 10 chr6 187847017 187847216 -1432338 - LTR54 LTR ERV1 0 510 303 663 182 28 35 chr6 187847301 187847375 -1432179 - LTR54B LTR ERV1 -356 142 68 1872 132 54 46 chr6 187847375 187847747 -1431807 - THE1C LTR MaLR 0 375 1 663 182 28 35 chr6 187847747 187847815 -1431739 - LTR54B LTR ERV1 -430 68 1 201 39 0 0 chr6 187849599 187849625 -1429929 + (CA)n Simple_repeat Simple_repeat 2 27 0 311 359 0 0 chr6 187850960 187851052 -1428502 - MIR SINE MIR -57 151 60 2294 61 14 0 chr6 187851816 187852111 -1427443 - AluY SINE Alu -12 299 1 246 148 19 37 chr6 187952527 187952581 -1326973 - AluSp SINE Alu -135 168 116 205 292 23 41 chr6 187953325 187953496 -1326058 + (CGGGG)n Simple_repeat Simple_repeat 4 171 0 * 442 251 0 43 chr6 187953368 187953624 -1325930 + G-rich Low_complexity Low_complexity 1 244 0 2303 115 0 13 chr6 187953724 187954038 -1325516 - AluSx SINE Alu -2 310 1 287 232 134 110 chr6 187954201 187954365 -1325189 - MIR SINE MIR -45 217 50 22 0 0 0 chr6 187956348 187956370 -1323184 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 187956623 187956653 -1322901 + AT_rich Low_complexity Low_complexity 1 30 0 617 153 189 0 chr6 187957947 187958058 -1321496 + FLAM_C SINE Alu 2 133 0 943 196 29 0 chr6 187958530 187958734 -1320820 + MER2 DNA MER2_type 1 210 -135 1053 279 122 50 chr6 187959208 187960037 -1319517 + L2 LINE L2 2066 2954 -360 2050 92 31 34 chr6 187960837 187961130 -1318424 - AluSc SINE Alu -17 292 1 428 184 166 43 chr6 187962283 187962446 -1317108 + MER74A LTR ERVL 1 183 -375 254 312 23 17 chr6 187962493 187962666 -1316888 + (CCCCAA)n Simple_repeat Simple_repeat 4 177 0 379 339 0 0 chr6 187962705 187962882 -1316672 + C-rich Low_complexity Low_complexity 4 180 0 255 353 0 0 chr6 187962896 187963032 -1316522 + C-rich Low_complexity Low_complexity 4 139 0 739 210 68 34 chr6 187963074 187963279 -1316275 + MER74A LTR ERVL 347 558 0 655 112 43 21 chr6 187963355 187963588 -1315966 + (CA)n Simple_repeat Simple_repeat 1 238 0 1566 227 97 0 chr6 187964496 187964857 -1314697 + MSTD LTR MaLR 1 396 0 2169 140 10 0 chr6 187965924 187966224 -1313330 - AluSx SINE Alu -2 310 8 226 112 45 112 chr6 187970242 187970331 -1309223 + (TTTAG)n Simple_repeat Simple_repeat 3 85 0 2306 110 0 0 chr6 187970400 187970701 -1308853 - AluSq SINE Alu -12 301 1 331 286 11 0 chr6 187971180 187971271 -1308283 + L1MB4 LINE L1 6086 6177 -3 2315 114 0 0 chr6 187977520 187977819 -1301735 + AluSx SINE Alu 11 309 -3 346 380 68 8 chr6 187978952 187979215 -1300339 - L2 LINE L2 -337 2977 2699 2315 162 13 2 chr6 187979974 187980370 -1299184 + MER57A LTR ERV1 1 400 -3 195 34 0 102 chr6 187982226 187982285 -1297269 + (CACAA)n Simple_repeat Simple_repeat 1 53 0 1012 186 91 0 chr6 187982841 187983072 -1296482 + L1MA4 LINE L1 6043 6294 -6 1203 126 33 0 chr6 187983570 187983753 -1295801 - AluSq SINE Alu -124 189 1 2264 269 65 24 chr6 187983754 187984574 -1294980 - L1MEc LINE L1 -5494 902 50 308 364 25 0 chr6 187984588 187984709 -1294845 + L1ME2 LINE L1 3572 3695 -2451 227 95 48 0 chr6 187984714 187984756 -1294798 + GA-rich Low_complexity Low_complexity 2 45 0 251 310 39 32 chr6 187984757 187984912 -1294642 + L1ME2 LINE L1 3684 3839 -2307 301 278 64 86 chr6 187984971 187985158 -1294396 + L1ME2 LINE L1 3856 4038 -2108 951 135 250 10 chr6 187985209 187985409 -1294145 + MER21A LTR ERV1 17 264 -667 2676 152 113 27 chr6 187985414 187985926 -1293628 + MER21A LTR ERV1 376 931 0 356 322 43 0 chr6 187985944 187986177 -1293377 + L1ME2 LINE L1 4038 4280 -1866 7803 169 12 19 chr6 187986219 187988103 -1291451 + L1PB2 LINE L1 3659 5554 -597 1772 67 0 0 chr6 187988103 187988328 -1291226 - AluY SINE Alu -6 305 81 7803 169 12 19 chr6 187988328 187988597 -1290957 + L1PB2 LINE L1 5554 5823 -328 198 0 0 0 chr6 187988597 187988619 -1290935 + (CA)n Simple_repeat Simple_repeat 2 23 0 7803 169 12 19 chr6 187988619 187988968 -1290586 + L1PB2 LINE L1 5823 6144 -7 1809 243 137 14 chr6 187989005 187990110 -1289444 + L1ME2 LINE L1 4333 5722 -442 2196 131 39 33 chr6 187990110 187990470 -1289084 - THE1B LTR MaLR 0 364 3 1809 243 137 14 chr6 187990470 187990973 -1288581 + L1ME2 LINE L1 5722 6162 -2 379 329 58 67 chr6 187992992 187993305 -1286249 + L2 LINE L2 1790 2101 -1213 2088 110 0 3 chr6 187993305 187993605 -1285949 - AluSx SINE Alu 0 312 14 379 329 58 67 chr6 187993605 187993650 -1285904 + L2 LINE L2 2101 2145 -1169 4186 144 63 52 chr6 187993779 187995155 -1284399 + pTR5 LTR ERV1 812 2606 0 845 144 8 0 chr6 187995155 187995280 -1284274 + pTR5 LTR ERV1 270 395 -2043 246 309 41 16 chr6 187995290 187995413 -1284141 + L2 LINE L2 2855 2980 -333 411 234 0 0 chr6 187995427 187995551 -1284003 + (CA)n Simple_repeat Simple_repeat 2 125 0 21 71 0 0 chr6 187996218 187996260 -1283294 + AT_rich Low_complexity Low_complexity 1 42 0 522 188 18 9 chr6 187996992 187997104 -1282450 - MLT1A1 LTR MaLR -236 129 17 1146 280 51 48 chr6 187999469 188000173 -1279381 - L1MDa LINE L1 -4813 1727 1022 2099 194 20 31 chr6 188001102 188001592 -1277962 + MER31A LTR ERV1 1 485 0 216 200 0 0 chr6 188001702 188001752 -1277802 + GA-rich Low_complexity Low_complexity 3 52 0 318 274 140 45 chr6 188001768 188001947 -1277607 + HAL1 LINE L1 1105 1300 -1207 180 318 28 56 chr6 188002336 188002443 -1277111 + MIR SINE MIR 89 192 -70 2041 189 73 0 chr6 188003121 188003518 -1276036 + MSTB LTR MaLR 1 426 0 189 0 0 0 chr6 188004159 188004180 -1275374 + (T)n Simple_repeat Simple_repeat 1 21 0 37 69 0 0 chr6 188004938 188005010 -1274544 + AT_rich Low_complexity Low_complexity 1 72 0 252 281 301 20 chr6 188005179 188005332 -1274222 - MIR SINE MIR -11 251 56 4091 133 30 5 chr6 188006134 188006808 -1272746 - L1MA2 LINE L1 0 6304 5614 694 220 94 82 chr6 188008658 188008999 -1270555 + MLT1B LTR MaLR 46 390 0 869 175 6 53 chr6 188009447 188009618 -1269936 - FRAM SINE Alu -2 164 2 2065 69 11 7 chr6 188010936 188011213 -1268341 + AluY SINE Alu 28 305 -6 2681 96 3 3 chr6 188014930 188015284 -1264270 - THE1A LTR MaLR -1 354 1 1525 251 35 35 chr6 188016210 188016665 -1262889 - MLT1C LTR MaLR -12 455 1 399 308 26 8 chr6 188016681 188016798 -1262756 - MIR SINE MIR -123 139 21 201 74 0 0 chr6 188016861 188016888 -1262666 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 243 88 0 0 chr6 188017090 188017124 -1262430 + (A)n Simple_repeat Simple_repeat 1 34 0 1251 182 116 0 chr6 188017494 188017752 -1261802 - MSTA LTR MaLR -9 419 132 1879 142 19 16 chr6 188018118 188018428 -1261126 + AluSx SINE Alu 1 311 -1 860 251 130 45 chr6 188018900 188019323 -1260231 - MLT1C LTR MaLR -3 464 6 228 258 67 0 chr6 188019330 188019419 -1260135 + (CACAT)n Simple_repeat Simple_repeat 5 99 0 350 264 126 77 chr6 188019835 188020017 -1259537 + L1ME4a LINE L1 5929 6119 -2 186 276 92 11 chr6 188020603 188020690 -1258864 + L2 LINE L2 1302 1395 -1919 454 202 11 0 chr6 188021876 188022054 -1257500 + (CAT)n Simple_repeat Simple_repeat 1 180 0 347 237 0 6 chr6 188022069 188022242 -1257312 + (CAT)n Simple_repeat Simple_repeat 1 172 0 290 221 0 8 chr6 188022279 188022401 -1257153 + (CAT)n Simple_repeat Simple_repeat 1 121 0 409 245 3 3 chr6 188022418 188022791 -1256763 + (CAT)n Simple_repeat Simple_repeat 1 373 0 449 240 3 3 chr6 188022850 188023242 -1256312 + (CAT)n Simple_repeat Simple_repeat 1 392 0 458 206 0 6 chr6 188023295 188023455 -1256099 + (CAT)n Simple_repeat Simple_repeat 1 159 0 181 219 0 0 chr6 188023465 188023506 -1256048 - MIR SINE MIR -4 258 218 187 264 38 0 chr6 188023555 188023608 -1255946 - MIR SINE MIR -149 113 59 21 36 0 0 chr6 188024094 188024122 -1255432 + AT_rich Low_complexity Low_complexity 1 28 0 308 236 81 16 chr6 188025937 188026060 -1253494 + L2 LINE L2 2847 2977 -336 264 287 43 11 chr6 188029147 188029241 -1250313 - MIR SINE MIR -4 258 162 1274 19 0 37 chr6 188030390 188030552 -1249002 + L1PA4 LINE L1 6000 6155 0 257 346 81 7 chr6 188031591 188031727 -1247827 - MIR SINE MIR -78 184 39 432 250 0 19 chr6 188034054 188034162 -1245392 - MER63 DNA MER1_type -288 774 43 346 175 0 0 chr6 188035266 188035323 -1244231 - Charlie3 DNA MER1_type -8 2702 2646 1810 129 44 0 chr6 188037287 188037588 -1241966 + AluSx SINE Alu 1 313 0 280 345 21 28 chr6 188039333 188039475 -1240079 - MIR SINE MIR -78 184 44 2357 70 14 0 chr6 188039831 188040118 -1239436 + AluSp SINE Alu 6 296 -17 389 267 40 20 chr6 188040527 188040677 -1238877 - L1MD3 LINE L1 -59 7936 7784 249 282 0 0 chr6 188040753 188040838 -1238716 - L1MD2 LINE L1 -226 6133 6049 2934 10 0 0 chr6 188041014 188041325 -1238229 - AluY SINE Alu 0 311 1 227 191 43 0 chr6 188043534 188043581 -1235973 - MLT1C LTR MaLR -266 124 76 334 200 0 67 chr6 188043610 188043700 -1235854 - MLT1C LTR MaLR -383 84 1 399 306 179 33 chr6 188043773 188044128 -1235426 - L1M4c LINE L1 -3885 2499 2125 253 263 26 0 chr6 188044452 188044528 -1235026 - HAL1 LINE L1 -899 1608 1531 367 270 52 29 chr6 188045246 188045420 -1234134 + MLT1C LTR MaLR 285 462 -5 350 245 11 0 chr6 188045695 188045789 -1233765 + L1MC4 LINE L1 7183 7277 -765 242 286 55 0 chr6 188046065 188046156 -1233398 + L1MC4 LINE L1 7564 7659 -383 2057 84 3 3 chr6 188046433 188046717 -1232837 - L1PA8 LINE L1 0 6172 5889 1038 186 200 20 chr6 188046727 188047077 -1232477 - LTR54B LTR ERV1 -85 413 1 384 208 77 56 chr6 188047139 188047282 -1232272 + L1MC4 LINE L1 6255 8042 0 440 290 56 22 chr6 188047350 188047581 -1231973 + L1M4 LINE L1 2734 2972 -3174 1614 196 0 14 chr6 188047581 188047893 -1231661 + AluJb SINE Alu 1 308 0 2125 105 0 24 chr6 188048006 188048327 -1231227 + AluSq SINE Alu 1 313 0 219 344 99 13 chr6 188050167 188050361 -1229193 + MIR SINE MIR 12 219 -43 204 158 0 0 chr6 188050921 188050959 -1228595 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 1435 212 64 0 chr6 188052072 188052416 -1227138 + MLT2D LTR ERVL 1 366 -48 280 192 32 40 chr6 188052448 188052573 -1226981 + (TATATG)n Simple_repeat Simple_repeat 6 129 0 194 214 95 0 chr6 188052726 188052768 -1226786 - MER5A DNA MER1_type -32 157 112 276 281 35 79 chr6 188052885 188052999 -1226555 + L2 LINE L2 3163 3271 -1 4722 131 54 3 chr6 188055101 188055841 -1223713 - MER4E LTR ERV1 -1 778 1 869 120 13 57 chr6 188056313 188056471 -1223083 - MER4D LTR ERV1 0 903 753 1373 142 13 134 chr6 188056546 188056878 -1222676 - MER4E LTR ERV1 -117 662 382 2061 158 0 13 chr6 188056878 188057182 -1222372 + AluSx SINE Alu 1 300 -12 1373 142 13 134 chr6 188057182 188057237 -1222317 - MER4E LTR ERV1 -397 382 322 5781 95 7 43 chr6 188057279 188058243 -1221311 - L1PB1 LINE L1 -1 6150 5219 719 106 18 0 chr6 188058243 188058356 -1221198 - MER4D LTR ERV1 -788 115 1 868 202 0 22 chr6 188058361 188058544 -1221010 + HERVH LTR ERV1 2669 2847 -4866 * 2827 128 18 0 chr6 188058526 188058970 -1220584 + HERVH LTR ERV1 3186 3637 -4076 373 274 10 0 chr6 188058972 188059074 -1220480 + HERVH LTR ERV1 4170 4272 -3441 31 26 0 0 chr6 188059079 188059117 -1220437 + AT_rich Low_complexity Low_complexity 1 38 0 704 257 5 5 chr6 188059167 188059385 -1220169 + HERVH LTR ERV1 4314 4531 -3182 1487 176 60 92 chr6 188060006 188060471 -1219083 + LTR7 LTR ERV1 1 450 0 233 356 30 22 chr6 188061886 188062021 -1217533 - L2 LINE L2 -2073 1241 1106 237 333 75 0 chr6 188062576 188062669 -1216885 - MIR SINE MIR -88 174 75 791 162 0 0 chr6 188064848 188064965 -1214589 + AluSg/x SINE Alu 172 288 -24 2347 111 0 7 chr6 188067274 188067581 -1211973 - AluSx SINE Alu -7 305 1 205 292 23 41 chr6 188068346 188068517 -1211037 + (CGGGG)n Simple_repeat Simple_repeat 4 171 0 * 442 251 0 43 chr6 188068389 188068645 -1210909 + G-rich Low_complexity Low_complexity 1 244 0 2303 115 0 13 chr6 188068745 188069059 -1210495 - AluSx SINE Alu -2 310 1 287 232 134 110 chr6 188069222 188069386 -1210168 - MIR SINE MIR -45 217 50 22 0 0 0 chr6 188071369 188071391 -1208163 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 188071644 188071674 -1207880 + AT_rich Low_complexity Low_complexity 1 30 0 617 153 189 0 chr6 188072968 188073079 -1206475 + FLAM_C SINE Alu 2 133 0 943 196 29 0 chr6 188073551 188073755 -1205799 + MER2 DNA MER2_type 1 210 -135 1053 279 122 50 chr6 188074229 188075058 -1204496 + L2 LINE L2 2066 2954 -360 2050 92 31 34 chr6 188075858 188076151 -1203403 - AluSc SINE Alu -17 292 1 428 184 166 43 chr6 188077304 188077467 -1202087 + MER74A LTR ERVL 1 183 -375 254 312 23 17 chr6 188077514 188077687 -1201867 + (CCCCAA)n Simple_repeat Simple_repeat 4 177 0 379 339 0 0 chr6 188077726 188077903 -1201651 + C-rich Low_complexity Low_complexity 4 180 0 255 353 0 0 chr6 188077917 188078053 -1201501 + C-rich Low_complexity Low_complexity 4 139 0 739 210 68 34 chr6 188078095 188078300 -1201254 + MER74A LTR ERVL 347 558 0 655 112 43 21 chr6 188078376 188078609 -1200945 + (CA)n Simple_repeat Simple_repeat 1 238 0 1449 227 97 0 chr6 188079517 188079878 -1199676 + MSTD LTR MaLR 1 396 0 2168 140 10 0 chr6 188080945 188081245 -1198309 - AluSx SINE Alu -2 310 8 226 112 45 112 chr6 188085263 188085352 -1194202 + (TTTAG)n Simple_repeat Simple_repeat 3 85 0 2316 110 0 0 chr6 188085421 188085722 -1193832 - AluSq SINE Alu -12 301 1 335 286 11 0 chr6 188086201 188086292 -1193262 + L1MB4 LINE L1 6086 6177 -3 2319 114 0 0 chr6 188092541 188092840 -1186714 + AluSx SINE Alu 11 309 -3 312 380 68 8 chr6 188093973 188094236 -1185318 - L2 LINE L2 -337 2977 2699 2208 162 13 2 chr6 188094995 188095391 -1184163 + MER57A LTR ERV1 1 400 -3 195 34 0 102 chr6 188097247 188097306 -1182248 + (CACAA)n Simple_repeat Simple_repeat 1 53 0 965 186 91 0 chr6 188097862 188098093 -1181461 + L1MA4 LINE L1 6043 6294 -6 239 122 61 49 chr6 188150285 188150367 -1129187 + (TTATA)n Simple_repeat Simple_repeat 2 84 0 1823 126 66 11 chr6 188152856 188153142 -1126412 - AluSx SINE Alu -10 302 1 1305 181 18 118 chr6 188153369 188153529 -1126025 + MLT1A1 LTR MaLR 6 180 -185 2331 119 0 0 chr6 188153529 188153832 -1125722 + AluSx SINE Alu 1 303 -9 1305 181 18 118 chr6 188153832 188154070 -1125484 + MLT1A1 LTR MaLR 180 364 -1 3027 148 63 39 chr6 188154072 188154658 -1124896 + MER4A LTR ERV1 1 600 0 413 331 0 0 chr6 188154933 188155063 -1124491 + L1ME2 LINE L1 3952 4081 -2065 2384 289 49 16 chr6 188155091 188156367 -1123187 + L1ME2 LINE L1 4256 5574 -590 895 281 35 60 chr6 188156368 188156694 -1122860 + L1ME2 LINE L1 5632 5942 -222 1687 196 0 3 chr6 188156694 188156985 -1122569 + AluJo SINE Alu 1 290 -22 895 281 35 60 chr6 188156985 188157177 -1122377 + L1ME2 LINE L1 5942 6137 -27 387 246 46 10 chr6 188157197 188157352 -1122202 + HsTC2 DNA Tc2 1719 1891 -7 299 333 0 19 chr6 188158558 188158714 -1120840 + (CAGGG)n Simple_repeat Simple_repeat 3 155 0 256 320 114 27 chr6 188159858 188160077 -1119477 - L2 LINE L2 -86 3227 2990 301 343 62 0 chr6 188160438 188160584 -1118970 - MER5A DNA MER1_type 0 189 35 24 0 0 0 chr6 188160743 188160767 -1118787 + AT_rich Low_complexity Low_complexity 1 24 0 181 188 146 0 chr6 188161025 188161073 -1118481 - MIR SINE MIR -37 225 171 1848 167 37 3 chr6 188161121 188161420 -1118134 + AluJb SINE Alu 1 309 -3 257 363 11 0 chr6 188161426 188161517 -1118037 - MIR SINE MIR -122 140 49 274 330 122 0 chr6 188162820 188162935 -1116619 + MIR SINE MIR 60 188 -74 287 336 91 0 chr6 188163614 188163757 -1115797 - MIR SINE MIR -1 261 106 303 345 36 0 chr6 188163856 188163995 -1115559 - MIR SINE MIR -90 172 29 359 292 17 17 chr6 188165381 188165501 -1114053 + Charlie1 DNA MER1_type 1 120 -2641 302 320 0 10 chr6 188165599 188165702 -1113852 + Charlie1 DNA MER1_type 2660 2761 0 229 284 62 0 chr6 188165869 188165950 -1113604 - MIR SINE MIR -161 101 16 432 285 44 0 chr6 188167957 188168094 -1111460 + MLT1K LTR MaLR 125 267 -321 3476 205 40 45 chr6 188171859 188172209 -1107345 + L1MC2 LINE L1 4912 5262 -1082 1938 170 0 10 chr6 188172209 188172520 -1107034 + AluJb SINE Alu 1 308 -4 3476 205 40 45 chr6 188172520 188173351 -1106203 + L1MC2 LINE L1 5262 6087 -257 1476 175 16 19 chr6 188173351 188173659 -1105895 + L1MC2 LINE L1 6027 6333 -11 2009 112 3 62 chr6 188175154 188175476 -1104078 + AluSc SINE Alu 1 303 -6 995 197 42 93 chr6 188176351 188176736 -1102818 + MLT1B LTR MaLR 26 390 0 348 247 21 0 chr6 188176823 188176916 -1102638 - MER53 DNA DNA 0 189 95 429 217 11 0 chr6 188177230 188177322 -1102232 + L1M4 LINE L1 5071 5163 -983 427 237 34 0 chr6 188177665 188177783 -1101771 + L1M4 LINE L1 5170 5291 -855 1427 164 77 7 chr6 188178143 188178442 -1101112 - MLT1A1 LTR MaLR -45 320 1 183 186 0 0 chr6 188178491 188178534 -1101020 + (TG)n Simple_repeat Simple_repeat 2 44 0 196 178 27 41 chr6 188178534 188178607 -1100947 + (CATATA)n Simple_repeat Simple_repeat 2 73 0 325 162 14 81 chr6 188178607 188178681 -1100873 - L1MCa LINE L1 -4363 2063 1995 2361 109 3 0 chr6 188182468 188182779 -1096775 - AluSx SINE Alu 0 312 1 756 222 0 0 chr6 188182989 188183169 -1096385 + (CA)n Simple_repeat Simple_repeat 1 180 0 294 267 143 0 chr6 188183354 188183459 -1096095 - MIR SINE MIR -97 165 46 1792 19 19 0 chr6 188185141 188185357 -1094197 + L1PA4 LINE L1 5936 6155 0 24 32 0 0 chr6 188188792 188188823 -1090731 + AT_rich Low_complexity Low_complexity 1 31 0 193 214 0 0 chr6 188188969 188189011 -1090543 - L2 LINE L2 -1 3312 3271 24 32 0 0 chr6 188189645 188189676 -1089878 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr6 188189754 188189780 -1089774 + AT_rich Low_complexity Low_complexity 1 26 0 2116 127 0 0 chr6 188190199 188190529 -1089025 + AluSx SINE Alu 1 330 0 2292 127 13 21 chr6 188190624 188191002 -1088552 - THE1C LTR MaLR 0 375 1 2002 134 95 37 chr6 188192250 188192660 -1086894 + Tigger2a DNA MER2_type 1 434 0 2174 108 0 38 chr6 188193286 188193601 -1085953 + AluSq SINE Alu 1 303 -10 310 276 58 0 chr6 188193623 188193710 -1085844 + MIR SINE MIR 12 103 -159 503 224 20 93 chr6 188194427 188194685 -1084869 - L1MA9 LINE L1 -214 6098 5864 234 0 0 0 chr6 188195675 188195701 -1083853 + (T)n Simple_repeat Simple_repeat 1 26 0 1985 119 0 0 chr6 188197250 188197519 -1082035 - AluSx SINE Alu 0 312 44 205 324 0 0 chr6 188201387 188201455 -1078099 + MIR SINE MIR 78 145 -63 661 285 48 1 chr6 188201880 188202098 -1077456 - MIR SINE MIR -4 258 33 316 344 61 0 chr6 188205788 188205951 -1073603 + MER5A DNA MER1_type 9 181 -8 2270 89 0 0 chr6 188206683 188206996 -1072558 + AluY SINE Alu 1 311 0 23 33 0 0 chr6 188207603 188207633 -1071921 + AT_rich Low_complexity Low_complexity 1 30 0 790 138 14 43 chr6 188207850 188207988 -1071566 - AluJo SINE Alu -177 135 2 244 257 257 9 chr6 188210113 188210222 -1069332 + MIR SINE MIR 20 155 -53 253 256 33 50 chr6 188210579 188210700 -1068854 - L1ME3A LINE L1 -1 6169 6051 386 299 143 45 chr6 188211035 188211343 -1068211 - L1ME3A LINE L1 -410 5752 5415 367 270 10 49 chr6 188211363 188211545 -1068009 - L1M3 LINE L1 -711 5457 5280 225 286 133 11 chr6 188214527 188214658 -1064896 - MIR SINE MIR -6 256 103 2074 111 0 39 chr6 188218254 188218560 -1060994 + AluY SINE Alu 1 294 -17 2898 10 0 0 chr6 188218565 188218873 -1060681 + AluYb8 SINE Alu 1 308 -10 1376 203 23 29 chr6 188218887 188219197 -1060357 - L1MB5 LINE L1 -22 6152 5845 389 231 9 9 chr6 188219208 188219321 -1060233 - L1MB5 LINE L1 -229 5945 5830 1390 253 70 25 chr6 188219330 188219805 -1059749 - L1MB5 LINE L1 -250 5924 5429 1503 169 65 0 chr6 188220067 188220346 -1059208 - AluJo SINE Alu -15 297 1 2334 105 0 0 chr6 188220504 188220800 -1058754 + AluSx SINE Alu 1 296 -16 561 266 3 3 chr6 188222677 188223349 -1056205 + (CA)n Simple_repeat Simple_repeat 1 672 0 363 269 7 0 chr6 188223395 188223684 -1055870 + (CA)n Simple_repeat Simple_repeat 1 291 0 1554 108 37 29 chr6 188224990 188225231 -1054323 - AluSq SINE Alu -21 292 50 456 117 0 0 chr6 188228425 188228502 -1051052 + (TG)n Simple_repeat Simple_repeat 2 78 0 581 202 0 44 chr6 188230337 188230383 -1049171 - Tigger3(Golem) DNA MER2_type -1 3027 2981 2423 111 42 3 chr6 188230383 188230744 -1048810 + THE1C LTR MaLR 1 375 0 581 202 0 44 chr6 188230744 188230811 -1048743 - Tigger3(Golem) DNA MER2_type -47 2981 2919 318 257 0 0 chr6 188230940 188231010 -1048544 - Tigger3(Golem) DNA MER2_type -2946 83 14 1319 174 16 99 chr6 188235617 188235939 -1043615 + AluJo SINE Alu 1 295 -7 209 317 163 31 chr6 188237108 188237335 -1042219 - L2 LINE L2 -15 3257 3001 2767 115 42 2 chr6 188237362 188237772 -1041782 + MER1A DNA MER1_type 102 527 -2 302 195 49 49 chr6 188238307 188238389 -1041165 + MIR SINE MIR 110 191 -71 2331 90 3 0 chr6 188238575 188238887 -1040667 + AluSq SINE Alu 1 313 0 2020 123 0 0 chr6 188238887 188239172 -1040382 + AluY SINE Alu 1 285 -26 375 41 0 0 chr6 188239177 188239226 -1040328 + (TTAAA)n Simple_repeat Simple_repeat 2 50 0 247 317 0 50 chr6 188239636 188239737 -1039817 + MIR SINE MIR 124 219 -43 1776 113 76 7 chr6 188241636 188241927 -1037627 - AluSx SINE Alu 0 312 2 497 278 98 39 chr6 188241967 188242172 -1037382 - MIR SINE MIR -18 244 28 630 249 62 21 chr6 188245459 188245652 -1033902 - MER3 DNA MER1_type -7 202 2 24 32 0 0 chr6 188248286 188248317 -1031237 + AT_rich Low_complexity Low_complexity 1 31 0 2041 133 0 0 chr6 188248616 188248910 -1030644 + AluSx SINE Alu 1 294 -18 203 333 64 0 chr6 188249106 188249184 -1030370 - MIR SINE MIR -66 142 60 508 238 105 0 chr6 188253422 188253594 -1025960 + MLT1C LTR MaLR 278 467 0 646 251 74 67 chr6 188253594 188253893 -1025661 + MLT1C LTR MaLR 157 457 -10 1941 119 14 7 chr6 188254150 188254444 -1025110 + AluSx SINE Alu 1 296 -16 207 0 0 0 chr6 188255175 188255198 -1024356 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 2749 206 60 25 chr6 188256108 188256830 -1022724 - L1MB8 LINE L1 -14 6164 5418 * 8234 223 27 31 chr6 188256827 188258747 -1020807 - L1MB3 LINE L1 -8 6411 4512 204 40 0 0 chr6 188258747 188258772 -1020782 + (TG)n Simple_repeat Simple_repeat 2 26 0 8234 223 27 31 chr6 188258772 188260102 -1019452 - L1MB3 LINE L1 -1907 4512 3178 * 11186 164 67 31 chr6 188260084 188262538 -1017016 - L1MB3 LINE L1 -3823 2559 29 497 272 31 10 chr6 188265086 188265281 -1014273 + L1ME LINE L1 5574 5772 -349 227 222 0 0 chr6 188265284 188265329 -1014225 + (TA)n Simple_repeat Simple_repeat 2 46 0 282 95 0 0 chr6 188265444 188265486 -1014068 + (CA)n Simple_repeat Simple_repeat 1 42 0 297 226 16 0 chr6 188267236 188267298 -1012256 - MER91B DNA MER1_type -127 63 1 419 304 115 24 chr6 188267301 188267597 -1011957 - L2 LINE L2 -1003 2311 1989 190 347 8 83 chr6 188267956 188268077 -1011477 - MIR SINE MIR -77 131 20 2913 181 88 72 chr6 188269529 188270902 -1008652 + L1MB2 LINE L1 4778 6169 -2 184 29 29 29 chr6 188271233 188271267 -1008287 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 1622 176 3 7 chr6 188271270 188271559 -1007995 - AluSx SINE Alu -24 288 1 2045 110 3 0 chr6 188273121 188273413 -1006141 + AluSx SINE Alu 3 295 -17 265 130 0 37 chr6 188274188 188274242 -1005312 - L1MB7 LINE L1 -14 6170 6119 814 158 144 77 chr6 188274251 188274345 -1005209 + AluJo SINE Alu 54 140 -172 2106 101 0 7 chr6 188274345 188274642 -1004912 + AluY SINE Alu 1 295 -16 814 158 144 77 chr6 188274642 188274769 -1004785 + AluJo SINE Alu 140 290 -22 414 0 0 0 chr6 188274770 188274816 -1004738 + (TG)n Simple_repeat Simple_repeat 2 47 0 984 147 0 0 chr6 188277651 188277808 -1001746 - AluJb SINE Alu -155 157 1 24 0 0 0 chr6 188279678 188279702 -999852 + AT_rich Low_complexity Low_complexity 1 24 0 2062 125 82 20 chr6 188280354 188280697 -998857 + THE1B LTR MaLR 1 364 0 318 284 136 72 chr6 188281831 188282176 -997378 + L1M2 LINE L1 857 1223 -5626 549 244 31 44 chr6 188282552 188282712 -996842 + MIR SINE MIR 84 241 -21 427 276 6 17 chr6 188287623 188287804 -991750 + GA-rich Low_complexity Low_complexity 2 180 0 309 338 68 63 chr6 188287804 188288245 -991309 + HAL1 LINE L1 880 1322 -1185 471 73 0 0 chr6 188290076 188290144 -989410 + (GA)n Simple_repeat Simple_repeat 2 69 0 187 341 130 16 chr6 188290387 188290510 -989044 + L3 LINE CR1 525 661 -916 194 138 69 0 chr6 188291612 188291670 -987884 + CT-rich Low_complexity Low_complexity 3 64 0 21 0 0 0 chr6 188292247 188292268 -987286 + AT_rich Low_complexity Low_complexity 1 21 0 269 268 0 0 chr6 188293059 188293141 -986413 + (CAT)n Simple_repeat Simple_repeat 1 82 0 313 218 0 20 chr6 188293151 188293298 -986256 + CT-rich Low_complexity Low_complexity 1 144 0 334 248 0 28 chr6 188293304 188293413 -986141 + C-rich Low_complexity Low_complexity 1 106 0 1556 148 0 16 chr6 188294403 188294647 -984907 + AluJb SINE Alu 58 297 -15 2315 123 0 0 chr6 188295328 188295636 -983918 - AluSx SINE Alu -4 308 1 211 326 33 11 chr6 188296364 188296456 -983098 - L2 LINE L2 -2 3270 3177 209 271 165 0 chr6 188296570 188296655 -982899 + MIR SINE MIR 62 160 -102 458 277 71 7 chr6 188297745 188297900 -981654 - MIR SINE MIR -49 213 49 192 125 0 0 chr6 188298978 188299010 -980544 + (GAA)n Simple_repeat Simple_repeat 2 33 0 219 247 0 0 chr6 188300700 188300773 -978781 + (CA)n Simple_repeat Simple_repeat 1 73 0 227 263 35 0 chr6 188302146 188302203 -977351 - MIR SINE MIR -112 150 92 21 36 0 0 chr6 188302786 188302814 -976740 + AT_rich Low_complexity Low_complexity 1 28 0 2674 52 0 0 chr6 188303821 188304127 -975427 - AluY SINE Alu -5 306 1 5409 120 23 6 chr6 188304209 188305670 -973884 - L1PA16 LINE L1 -9 6157 4703 460 298 144 22 chr6 188305702 188305883 -973671 - MIR SINE MIR -52 210 8 1055 25 0 0 chr6 188307862 188307980 -971574 + AluY SINE Alu 184 301 -10 263 204 9 80 chr6 188308442 188308601 -970953 - HsTC2 DNA Tc2 -32 1866 5 249 240 10 10 chr6 188308872 188308972 -970582 + HAL1 LINE L1 94 193 -2314 321 327 45 5 chr6 188309028 188309227 -970327 + HAL1 LINE L1 696 902 -1605 214 310 0 40 chr6 188309529 188309703 -969851 + GA-rich Low_complexity Low_complexity 3 169 0 228 315 0 33 chr6 188309813 188309994 -969560 + GA-rich Low_complexity Low_complexity 4 178 0 1839 121 0 42 chr6 188310691 188310980 -968574 - AluSx SINE Alu -1 311 35 408 195 23 0 chr6 188311284 188311371 -968183 - MLT1F1 LTR MaLR 0 567 479 556 224 73 55 chr6 188311477 188311696 -967858 - MLT1F1 LTR MaLR -276 291 69 226 274 181 14 chr6 188312224 188312439 -967115 - L1ME3A LINE L1 -14 6156 5906 180 217 83 33 chr6 188312613 188312673 -966881 - L2 LINE L2 -1889 1425 1363 1522 200 77 3 chr6 188313035 188313375 -966179 + MLT2D LTR ERVL 1 365 -49 186 103 0 0 chr6 188313400 188313429 -966125 + (CA)n Simple_repeat Simple_repeat 2 30 0 337 241 5 9 chr6 188315556 188315777 -963777 + (TG)n Simple_repeat Simple_repeat 1 220 0 439 236 6 6 chr6 188315809 188315987 -963567 + (TG)n Simple_repeat Simple_repeat 2 179 0 508 226 0 38 chr6 188316001 188316505 -963049 + (TG)n Simple_repeat Simple_repeat 1 485 0 2319 82 3 20 chr6 188316924 188317228 -962326 - AluSp SINE Alu -14 299 1 377 319 52 14 chr6 188317237 188317447 -962107 - L1MC4a LINE L1 -1863 5945 5728 756 276 155 39 chr6 188318131 188318775 -960779 - L2 LINE L2 -1 3271 2560 304 250 13 0 chr6 188318787 188318863 -960691 + MLT2D LTR ERVL 365 441 -74 10641 232 90 89 chr6 188318864 188321933 -957621 + ERVL-D-B1 LTR ERVL 18 3098 -2666 2224 135 0 0 chr6 188321933 188322230 -957324 - AluSx SINE Alu -15 297 1 10641 232 90 89 chr6 188322230 188324500 -955054 + ERVL-D-B1 LTR ERVL 3098 5364 -400 1243 299 4 141 chr6 188324509 188325004 -954550 + ERVL-D-B1 LTR ERVL 5329 5755 -9 1536 207 90 72 chr6 188325005 188325516 -954038 + MLT2B1 LTR ERVL 1 520 0 985 312 136 5 chr6 188325516 188326084 -953470 - L2 LINE L2 -1128 2186 1545 1099 295 100 73 chr6 188326273 188326659 -952895 - L1M4c LINE L1 -648 2095 1721 2274 124 0 0 chr6 188326659 188326958 -952596 - AluSq SINE Alu -14 299 1 1099 295 100 73 chr6 188326958 188327416 -952138 - L1M4c LINE L1 -1022 1721 1022 627 284 27 79 chr6 188329977 188330343 -949211 + MLT1B LTR MaLR 43 389 -1 572 246 70 7 chr6 188331597 188331952 -947602 - MLT1C LTR MaLR -40 427 23 199 287 99 92 chr6 188331978 188332250 -947304 - L2 LINE L2 -537 2777 2504 1766 97 34 22 chr6 188333246 188333515 -946039 - AluSx SINE Alu -6 306 35 202 312 13 39 chr6 188336393 188336470 -943084 - MIR SINE MIR -70 192 118 831 201 0 0 chr6 188342541 188342720 -936834 + (CA)n Simple_repeat Simple_repeat 1 179 0 651 270 0 0 chr6 188342745 188343085 -936469 + (CA)n Simple_repeat Simple_repeat 1 340 0 651 233 0 0 chr6 188343119 188343295 -936259 + (CA)n Simple_repeat Simple_repeat 1 176 0 298 316 49 73 chr6 188343688 188343901 -935653 + MIR SINE MIR 40 236 -26 1293 219 75 44 chr6 188344969 188345425 -934129 + MLT1D LTR MaLR 35 504 -1 248 195 78 47 chr6 188345454 188345582 -933972 + (CTGGGG)n Simple_repeat Simple_repeat 4 135 0 296 181 82 53 chr6 188345803 188345974 -933580 + (CTGGGG)n Simple_repeat Simple_repeat 4 179 0 307 193 82 53 chr6 188346069 188346240 -933314 + (CTGGGG)n Simple_repeat Simple_repeat 4 179 0 211 219 83 53 chr6 188346289 188346458 -933096 + (CTGGGG)n Simple_repeat Simple_repeat 4 177 0 257 205 82 53 chr6 188346817 188346988 -932566 + (CTGGGG)n Simple_repeat Simple_repeat 4 179 0 247 180 60 90 chr6 188347552 188347719 -931835 + (CTGGGG)n Simple_repeat Simple_repeat 4 165 0 1766 168 17 0 chr6 188350376 188350667 -928887 - AluJo SINE Alu -16 296 1 244 329 123 7 chr6 188351030 188351185 -928369 - MIR SINE MIR -74 188 16 237 342 5 38 chr6 188353785 188353969 -925585 + (TG)n Simple_repeat Simple_repeat 1 178 0 525 261 39 6 chr6 188354442 188354622 -924932 + MLT1C LTR MaLR 2 187 -280 2241 101 0 3 chr6 188356668 188356966 -922588 - AluSx SINE Alu -15 297 1 626 232 61 6 chr6 188358759 188358923 -920631 + MER5B DNA MER1_type 1 173 -5 4705 57 10 12 chr6 188359660 188360252 -919302 - LTR10C LTR ERV1 0 591 1 1267 238 30 108 chr6 188361981 188362675 -916879 + L1M4 LINE L1 4372 5118 -1028 864 82 74 44 chr6 188362675 188362810 -916744 - MER85 DNA T2_type 0 139 1 1267 238 30 108 chr6 188362810 188362879 -916675 + L1M4 LINE L1 5118 5070 -1076 1693 178 56 66 chr6 188362879 188363273 -916281 + MLT1B LTR MaLR 1 390 0 1267 238 30 108 chr6 188363273 188363330 -916224 + L1M4 LINE L1 5069 5129 -1017 39 84 0 0 chr6 188363389 188363484 -916070 + AT_rich Low_complexity Low_complexity 1 95 0 1836 156 0 33 chr6 188363645 188363952 -915602 + AluJb SINE Alu 1 297 -15 5110 160 43 8 chr6 188364029 188365840 -913714 + L1MA9 LINE L1 4446 6312 0 233 289 114 44 chr6 188366122 188366236 -913318 + L2 LINE L2 3191 3312 -1 604 156 0 10 chr6 188366328 188366424 -913130 + FLAM_C SINE Alu 36 130 -13 289 245 101 58 chr6 188366887 188367026 -912528 - L2 LINE L2 -189 3083 2939 265 29 0 0 chr6 188367605 188367639 -911915 - U2 snRNA snRNA -154 34 1 269 268 28 0 chr6 188367988 188368059 -911495 - MER63 DNA MER1_type -8 1053 981 * 329 210 80 20 chr6 188368057 188368157 -911397 - MER63 DNA MER1_type -90 746 15 282 370 121 25 chr6 188368349 188368755 -910799 - L2 LINE L2 -662 2652 2208 196 383 150 0 chr6 188371017 188371137 -908417 + MIR SINE MIR 119 256 -6 193 299 15 15 chr6 188372024 188372091 -907463 - L2 LINE L2 -217 3055 2989 509 120 0 93 chr6 188373210 188373318 -906236 + L1MB2 LINE L1 6072 6169 -2 226 326 118 0 chr6 188374066 188374210 -905344 + HAL1 LINE L1 13 173 -2334 442 299 233 19 chr6 188374212 188374586 -904968 + HAL1 LINE L1 213 666 -1841 651 315 48 34 chr6 188430537 188430974 -848580 - L1ME LINE L1 -624 5542 5083 4841 83 9 2 chr6 188430974 188431609 -847945 + L1PA10 LINE L1 5523 6162 -6 651 315 48 34 chr6 188431609 188431914 -847640 - L1ME LINE L1 -1083 5083 4784 1454 221 152 38 chr6 188432362 188432910 -846644 - LTR36 LTR ERV1 0 611 2 316 239 73 0 chr6 188433062 188433171 -846383 - REP3 LTR ERV -444 118 2 26 30 0 0 chr6 188435168 188435201 -844353 + AT_rich Low_complexity Low_complexity 1 33 0 2220 105 0 3 chr6 188436336 188436640 -842914 - AluSx SINE Alu -9 303 1 2232 102 0 13 chr6 188436649 188436964 -842590 - AluSx SINE Alu -1 311 1 2176 100 7 0 chr6 188438927 188439226 -840328 + AluSx SINE Alu 1 301 -11 203 148 0 93 chr6 188439599 188439653 -839901 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 1140 122 6 0 chr6 188439678 188439842 -839712 - L1PA10 LINE L1 -1 6167 6003 2131 69 10 49 chr6 188440278 188440583 -838971 + AluY SINE Alu 1 293 -18 858 144 0 0 chr6 188441579 188441759 -837795 + (GA)n Simple_repeat Simple_repeat 1 180 0 636 175 6 11 chr6 188441762 188441939 -837615 + GA-rich Low_complexity Low_complexity 2 177 0 932 137 4 4 chr6 188441941 188442181 -837373 + (GA)n Simple_repeat Simple_repeat 2 241 0 578 201 0 6 chr6 188442199 188442378 -837176 + GA-rich Low_complexity Low_complexity 2 179 0 4179 166 45 0 chr6 188442566 188443257 -836297 - MER72 LTR ERV1 0 722 1 1041 226 63 50 chr6 188443608 188443927 -835627 - MLT2D LTR ERVL -9 405 83 685 220 79 6 chr6 188443927 188443956 -835598 - Ricksha DNA DNA -1672 374 333 1389 271 81 32 chr6 188443956 188444451 -835103 - HERVL-D LTR ERVL 0 5654 5136 398 200 19 48 chr6 188444470 188444575 -834979 - MER6A DNA MER2_type -242 363 262 270 272 65 0 chr6 188444546 188444638 -834916 + Alu SINE Alu 203 300 0 * 659 161 238 0 chr6 188445266 188445409 -834145 + MER6A DNA MER2_type 1 177 -428 * 1460 179 10 29 chr6 188445407 188445675 -833879 + MER6A DNA MER2_type 305 568 -297 3617 105 68 32 chr6 188445675 188446195 -833359 + LTR19B LTR ERV1 1 544 -36 2742 7 0 0 chr6 188446195 188446499 -833055 + AluYb8 SINE Alu 1 304 -14 3617 105 68 32 chr6 188446499 188446538 -833016 + LTR19B LTR ERV1 544 580 0 1460 179 10 29 chr6 188446538 188446576 -832978 + MER6A DNA MER2_type 568 605 0 397 210 254 0 chr6 188447152 188447290 -832264 + MER5A DNA MER1_type 11 183 -6 328 266 25 0 chr6 188447678 188447757 -831797 - L1ME4a LINE L1 -2 6119 6039 222 209 12 35 chr6 188447757 188447843 -831711 + GA-rich Low_complexity Low_complexity 1 84 0 4385 100 18 11 chr6 188449841 188450532 -829022 - L1P3 LINE L1 -4689 1772 1090 328 209 23 23 chr6 188455504 188455681 -823873 + GA-rich Low_complexity Low_complexity 2 178 0 202 227 0 0 chr6 188455816 188455860 -823694 + T-rich Low_complexity Low_complexity 2 45 0 462 277 140 24 chr6 188456894 188457230 -822324 + MER115 DNA AcHobo 26 400 -293 1217 240 75 0 chr6 188457305 188457638 -821916 + MER89 LTR ERV1 178 535 -24 309 303 107 50 chr6 188458262 188458523 -821031 + L2 LINE L2 2959 3234 -38 744 175 8 0 chr6 188464969 188465095 -814459 + MER72 LTR ERV1 148 274 -448 289 296 0 0 chr6 188465332 188465440 -814114 + T-rich Low_complexity Low_complexity 1 108 0 2226 66 11 0 chr6 188466960 188467246 -812308 + AluY SINE Alu 1 289 -22 210 143 0 0 chr6 188467677 188467712 -811842 + (CA)n Simple_repeat Simple_repeat 2 36 0 1875 132 0 3 chr6 188467819 188468106 -811448 + AluJb SINE Alu 14 299 -13 1002 122 0 0 chr6 188468622 188468802 -810752 + (TG)n Simple_repeat Simple_repeat 1 180 0 2053 112 0 30 chr6 188473553 188473857 -805697 + AluSg SINE Alu 1 295 -15 180 0 0 0 chr6 188475142 188475162 -804392 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 201 154 0 0 chr6 188475225 188475264 -804290 + CT-rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr6 188476277 188476308 -803246 + AT_rich Low_complexity Low_complexity 1 31 0 206 146 24 0 chr6 188476326 188476367 -803187 + (CCTAT)n Simple_repeat Simple_repeat 3 44 0 1621 167 71 80 chr6 188476617 188477053 -802501 - MSTB1 LTR MaLR 0 432 1 1134 244 110 30 chr6 188478479 188478966 -800588 - MER89 LTR ERV1 0 559 1 2211 116 7 0 chr6 188479261 188479279 -800275 - AluY SINE Alu -8 303 287 270 26 26 0 chr6 188479279 188479317 -800237 + (TTTG)n Simple_repeat Simple_repeat 2 176 0 2211 116 7 0 chr6 188479317 188479599 -799955 - AluY SINE Alu -24 287 1 208 170 19 38 chr6 188479653 188479706 -799848 + T-rich Low_complexity Low_complexity 3 54 0 21 36 0 0 chr6 188480788 188480816 -798738 + AT_rich Low_complexity Low_complexity 1 28 0 274 350 6 85 chr6 188481366 188481543 -798011 - MIR SINE MIR -71 191 29 1609 254 44 29 chr6 188482637 188483114 -796440 - MLT1D LTR MaLR -21 484 1 377 302 52 22 chr6 188483114 188483369 -796185 - L1ME LINE L1 -617 5616 5342 240 306 82 36 chr6 188484511 188484730 -794824 - L1ME LINE L1 -1442 4773 4545 327 326 169 0 chr6 188484733 188484917 -794637 - L1ME LINE L1 -1698 4517 4303 1041 260 35 40 chr6 188485263 188485609 -793945 - MER45B DNA AcHobo -22 1018 675 267 239 0 0 chr6 188485692 188485759 -793795 + (TA)n Simple_repeat Simple_repeat 2 68 0 517 54 0 0 chr6 188485784 188485858 -793696 + L1PA4 LINE L1 5955 6028 -127 1501 288 71 6 chr6 188485901 188486435 -793119 - MER45B DNA AcHobo -411 629 61 234 333 33 0 chr6 188486970 188487090 -792464 - L1ME LINE L1 -2237 3978 3855 961 339 75 21 chr6 188487257 188487832 -791722 - L1ME LINE L1 -2345 3870 3265 267 335 11 16 chr6 188487832 188488023 -791531 - L1ME LINE L1 -2869 3346 3157 707 343 108 33 chr6 188488048 188489108 -790446 - L1MEc LINE L1 -3143 3072 1930 335 23 23 0 chr6 188489837 188489881 -789673 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 419 207 201 37 chr6 188490537 188490704 -788850 - MLT1C LTR MaLR 0 549 396 1505 178 53 75 chr6 188494843 188495242 -784312 - MLT1B LTR MaLR 0 390 1 698 296 104 13 chr6 188495354 188495671 -783883 - L2 LINE L2 -660 2654 2309 657 215 94 117 chr6 188496777 188496887 -782667 - MLT1C LTR MaLR -35 432 321 714 195 96 102 chr6 188496887 188497251 -782303 + MLT1A1 LTR MaLR 4 365 0 657 215 94 117 chr6 188497251 188497452 -782102 - MLT1C LTR MaLR -146 321 131 2305 98 0 0 chr6 188497452 188497737 -781817 - AluSx SINE Alu -17 295 11 657 215 94 117 chr6 188497737 188497861 -781693 - MLT1C LTR MaLR -336 131 6 505 300 33 41 chr6 188501763 188502033 -777521 - L2 LINE L2 -501 2813 2546 431 316 107 28 chr6 188502349 188502713 -776841 - L2 LINE L2 -962 2352 1960 223 226 147 10 chr6 188504753 188504855 -774699 + MIR SINE MIR 23 138 -124 231 114 0 0 chr6 188505250 188505285 -774269 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 2515 63 7 0 chr6 188508743 188509044 -770510 + AluSp SINE Alu 1 303 -10 318 135 59 29 chr6 188509702 188509872 -769682 + (TG)n Simple_repeat Simple_repeat 1 175 0 263 202 35 44 chr6 188509891 188510005 -769549 + (GTGTG)n Simple_repeat Simple_repeat 1 113 0 272 116 71 32 chr6 188510011 188510166 -769388 + (TG)n Simple_repeat Simple_repeat 1 161 0 256 246 93 0 chr6 188512244 188512362 -767192 + Charlie1 DNA MER1_type 2573 2701 -60 2156 243 80 42 chr6 188513286 188514028 -765526 + Charlie1a DNA MER1_type 32 801 -654 1145 225 127 30 chr6 188514165 188514592 -764962 - MER89 LTR ERV1 -90 469 2 2402 201 58 36 chr6 188514598 188515269 -764285 + Charlie1a DNA MER1_type 770 1455 0 499 301 11 38 chr6 188515324 188515507 -764047 - MER5B DNA MER1_type 0 178 1 604 271 26 0 chr6 188517349 188517504 -762050 - MER3 DNA MER1_type -1 208 50 205 270 21 28 chr6 188517904 188518018 -761536 + MIR SINE MIR 11 122 -94 1053 134 0 0 chr6 188519196 188519368 -760186 + (GGA)n Simple_repeat Simple_repeat 3 174 0 247 338 0 0 chr6 188520070 188520147 -759407 + (CA)n Simple_repeat Simple_repeat 1 77 0 718 264 67 10 chr6 188521202 188521410 -758144 + MLT1K LTR MaLR 359 578 -10 512 299 128 7 chr6 188523405 188523679 -755875 - MER115 DNA AcHobo -385 308 2 1023 276 47 16 chr6 188523709 188524093 -755461 + MER69 DNA AcHobo 490 885 -1641 893 254 122 13 chr6 188524250 188524643 -754911 + MER69 DNA AcHobo 1904 2339 -187 257 238 67 9 chr6 188524615 188524720 -754834 - MER69 DNA AcHobo -667 1859 1749 * 263 280 65 0 chr6 188528330 188528437 -751117 + MLT1J LTR MaLR 87 200 -311 334 282 26 0 chr6 188528494 188528611 -750943 + MLT1J LTR MaLR 388 507 -4 333 284 90 40 chr6 188528651 188528852 -750702 - L2 LINE L2 0 3313 3103 202 146 24 0 chr6 188530111 188530152 -749402 + GA-rich Low_complexity Low_complexity 3 44 0 2534 67 0 6 chr6 188531221 188531533 -748021 - AluY SINE Alu -1 310 1 587 216 44 12 chr6 188533524 188533721 -745833 + L1MB3 LINE L1 5857 6062 -119 1206 144 6 0 chr6 188533721 188533894 -745660 + AluJb SINE Alu 1 174 -138 902 229 57 57 chr6 188533895 188534210 -745344 - MLT1B LTR MaLR -53 337 23 404 229 0 31 chr6 188534750 188535044 -744510 + (CA)n Simple_repeat Simple_repeat 1 284 0 312 203 25 13 chr6 188535055 188535213 -744341 + (CA)n Simple_repeat Simple_repeat 2 161 0 192 143 0 0 chr6 188535833 188535875 -743679 + (GA)n Simple_repeat Simple_repeat 1 42 0 2470 192 43 11 chr6 188535949 188536480 -743074 - LTR9B LTR ERV1 -96 548 1 524 264 70 25 chr6 188537701 188537902 -741652 - MLT1D LTR MaLR -295 210 1 2437 67 30 0 chr6 188539286 188539585 -739969 + AluY SINE Alu 1 308 -3 388 309 36 24 chr6 188539748 188539913 -739641 - MIR SINE MIR -82 180 14 266 310 20 0 chr6 188540527 188540627 -738927 + (TG)n Simple_repeat Simple_repeat 1 102 0 3939 148 22 32 chr6 188540926 188542176 -737378 - L1MA9 LINE L1 -313 5999 4747 2475 134 29 11 chr6 188542176 188542653 -736901 + L1MA9 LINE L1 4255 4740 -1406 243 228 76 0 chr6 188542648 188542727 -736827 + L1 LINE L1 2850 2934 -3212 * 471 257 18 0 chr6 188542759 188542868 -736686 + MLT1C LTR MaLR 357 467 0 297 339 97 36 chr6 188543003 188543251 -736303 - MLT1K LTR MaLR -315 273 11 1141 229 118 76 chr6 188543785 188544354 -735200 + MER4A LTR ERV1 70 662 -2 3257 142 38 54 chr6 188544677 188545244 -734310 - MER4D LTR ERV1 0 903 345 2040 153 0 3 chr6 188545244 188545545 -734009 + AluSx SINE Alu 1 300 -12 3257 142 38 54 chr6 188545545 188545606 -733948 - MER4D LTR ERV1 -558 345 285 848 230 16 0 chr6 188545684 188545875 -733679 - L1M3 LINE L1 -410 5773 5580 330 211 0 40 chr6 188546938 188547014 -732540 + MIR SINE MIR 114 186 -76 336 216 44 0 chr6 188550722 188550853 -728701 + MLT1A1 LTR MaLR 249 390 -6 180 0 0 0 chr6 188553015 188553035 -726519 + (CAA)n Simple_repeat Simple_repeat 2 21 0 182 304 14 14 chr6 188556967 188557036 -722518 + L2 LINE L2 3200 3268 -4 21 82 0 0 chr6 188557159 188557208 -722346 + AT_rich Low_complexity Low_complexity 1 49 0 1930 128 48 48 chr6 188557600 188557975 -721579 + THE1C LTR MaLR 1 375 0 9843 115 55 3 chr6 188557975 188559476 -720078 + THE1C-int LTR MaLR 1 1580 0 1973 150 27 24 chr6 188559476 188559849 -719705 + THE1C LTR MaLR 1 374 -1 318 216 29 39 chr6 188559981 188560083 -719471 + LTR45 LTR ERV1 425 525 0 2212 122 0 3 chr6 188560490 188560784 -718770 + AluSx SINE Alu 1 293 -19 477 205 36 36 chr6 188562307 188562463 -717091 + LTR45 LTR ERV1 324 518 -7 290 325 61 25 chr6 188562749 188562912 -716642 + MIR SINE MIR 43 211 -51 1325 276 50 10 chr6 188562952 188563368 -716186 - MER49 LTR ERV1 0 923 491 492 150 12 0 chr6 188563500 188563580 -715974 - MER72 LTR ERV1 -641 81 1 373 277 64 43 chr6 188564003 188564144 -715410 + MIR SINE MIR 57 200 -62 2709 157 21 122 chr6 188564958 188565670 -713884 + MER39B LTR ERV1 1 640 -13 224 326 35 89 chr6 188566163 188566445 -713109 - L2 LINE L2 -805 2509 2243 308 289 149 34 chr6 188566549 188566757 -712797 - MIR SINE MIR 0 262 31 260 263 53 0 chr6 188566877 188566934 -712620 - MER65A-int LTR ERV1 -905 3966 3907 2240 115 7 0 chr6 188566968 188567308 -712246 + AluSx SINE Alu 1 342 0 1914 172 76 14 chr6 188567671 188568090 -711464 - MER65A LTR ERV1 0 445 1 1921 222 30 32 chr6 188568090 188568563 -710991 - MER65A-int LTR ERV1 -2 4869 4398 1500 245 100 9 chr6 188568559 188568979 -710575 - MER65A-int LTR ERV1 -809 4062 3605 * 300 185 17 10 chr6 188569045 188569116 -710438 - MER65A-int LTR ERV1 -1025 5265 4030 2131 196 95 85 chr6 188569134 188570469 -709085 - MER65A-int LTR ERV1 -1216 5115 3727 706 236 55 14 chr6 188570540 188570760 -708794 - MER65A-int LTR ERV1 -2870 3728 3500 262 130 46 145 chr6 188570997 188571128 -708426 - MER65A-int LTR ERV1 -3936 4184 2318 890 116 96 0 chr6 188571166 188571312 -708242 + L1PA14 LINE L1 6002 6161 0 6790 203 58 96 chr6 188571344 188573652 -705902 - MER65A-int LTR ERV1 -2366 2505 818 2214 113 0 0 chr6 188573652 188573944 -705610 + AluSg SINE Alu 6 297 -13 6790 203 58 96 chr6 188573944 188574675 -704879 - MER65A-int LTR ERV1 -4053 818 61 2478 129 29 23 chr6 188574734 188575176 -704378 - MER65A LTR ERV1 0 445 1 274 320 21 0 chr6 188576913 188577010 -702544 - L2 LINE L2 -22 3291 3193 1555 129 123 21 chr6 188578030 188578370 -701184 + THE1C LTR MaLR 1 375 0 1566 184 57 65 chr6 188578644 188579031 -700523 - MLT1B LTR MaLR -6 384 1 378 257 30 0 chr6 188580455 188580556 -698998 - L2 LINE L2 -5 3267 3164 708 325 45 8 chr6 188580585 188580828 -698726 + MIR SINE MIR 7 258 -4 207 100 0 0 chr6 188580828 188580858 -698696 + (CAT)n Simple_repeat Simple_repeat 3 32 0 838 125 0 8 chr6 188582331 188582564 -696990 + AluSq SINE Alu 2 307 -6 371 254 63 14 chr6 188584532 188584674 -694880 + HsTC2 DNA Tc2 1184 1332 -566 436 232 90 30 chr6 188584919 188585126 -694428 + HsTC2 DNA Tc2 1680 1898 0 487 265 95 7 chr6 188585352 188585499 -694055 - MIR SINE MIR -87 175 16 286 349 132 20 chr6 188585739 188585891 -693663 - MIR SINE MIR -80 182 14 2171 131 3 0 chr6 188585958 188586256 -693298 + AluSx SINE Alu 1 299 -13 595 189 7 7 chr6 188586260 188586408 -693146 + (TG)n Simple_repeat Simple_repeat 2 149 0 211 313 61 10 chr6 188588254 188588353 -691201 - MIR SINE MIR -65 143 40 303 246 14 0 chr6 188588976 188589045 -690509 + MER63 DNA MER1_type 677 746 -314 2186 158 20 27 chr6 188590882 188591263 -688291 + MER57A LTR ERV1 1 380 -23 1866 153 3 26 chr6 188591263 188591571 -687983 - AluJb SINE Alu -11 301 1 2186 158 20 27 chr6 188591571 188591595 -687959 + MER57A LTR ERV1 380 403 0 264 350 121 0 chr6 188593481 188593761 -685793 - L1MC/D LINE L1 -2182 5626 5313 454 283 102 44 chr6 188593782 188594075 -685479 - L1MC/D LINE L1 -874 5272 4963 1371 284 39 8 chr6 188594539 188595047 -684507 - L1MB1 LINE L1 -1 6167 5644 532 172 139 16 chr6 188595038 188595160 -684394 + L1MB1 LINE L1 5511 5647 -521 * 466 256 22 36 chr6 188595677 188595814 -683740 - MIR SINE MIR -59 203 69 1731 90 0 49 chr6 188596482 188596727 -682827 - AluSg SINE Alu -15 295 63 781 170 52 0 chr6 188596895 188597048 -682506 + Tigger4(Zombi) DNA MER2_type 1 161 -2570 2193 195 45 68 chr6 188597058 188597633 -681921 + Tigger4(Zombi) DNA MER2_type 2170 2731 0 896 145 0 0 chr6 188598681 188598812 -680742 + AluSg/x SINE Alu 182 312 0 15861 145 37 17 chr6 188598825 188605534 -674020 + L1MA2 LINE L1 873 7723 0 255 238 57 67 chr6 188605698 188605803 -673751 - L2 LINE L2 -50 3263 3160 317 243 35 64 chr6 188605808 188605981 -673573 + L1MC5 LINE L1 7008 7175 -786 378 246 47 64 chr6 188606173 188606409 -673145 + L1MC5 LINE L1 7292 7523 -438 718 246 42 31 chr6 188606452 188606740 -672814 - MER90 LTR ERV1 -11 603 313 1889 167 20 0 chr6 188606978 188607284 -672270 + AluSx SINE Alu 1 312 0 1416 231 72 17 chr6 188607608 188608080 -671474 - Zaphod DNA AcHobo -68 3963 3466 211 174 0 22 chr6 188609148 188609194 -670360 + L2 LINE L2 3269 3313 0 24 53 0 0 chr6 188609335 188609373 -670181 + AT_rich Low_complexity Low_complexity 1 38 0 278 360 86 20 chr6 188611562 188612053 -667501 - L1M4 LINE L1 -1901 4245 3723 257 368 9 0 chr6 188612082 188612188 -667366 + (TG)n Simple_repeat Simple_repeat 1 107 0 529 229 15 23 chr6 188612244 188612375 -667179 - MLT1B LTR MaLR -223 167 38 420 199 11 59 chr6 188613121 188613307 -666247 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 373 159 5 92 chr6 188613346 188613541 -666013 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 27 0 0 0 chr6 188615532 188615559 -663995 + AT_rich Low_complexity Low_complexity 1 27 0 1679 190 30 38 chr6 188616066 188616434 -663120 + MLT1A1 LTR MaLR 1 365 0 365 233 19 6 chr6 188617035 188617194 -662360 + (CAT)n Simple_repeat Simple_repeat 2 162 0 196 238 213 0 chr6 188617662 188617742 -661812 - MIR SINE MIR -119 143 47 440 269 44 0 chr6 188618662 188618833 -660721 - L1MB2 LINE L1 -318 5853 5677 1117 249 35 0 chr6 188618840 188619129 -660425 - L1M3 LINE L1 -422 5758 5460 1066 246 59 0 chr6 188619127 188619416 -660138 + L1MB4 LINE L1 5867 6172 -8 * 405 257 20 0 chr6 188621519 188621620 -657934 + Charlie1 DNA MER1_type 2658 2760 -1 712 207 27 37 chr6 188621625 188621813 -657741 + MER5A DNA MER1_type 2 187 -2 453 179 21 21 chr6 188621877 188621972 -657582 - MER5A DNA MER1_type -86 103 9 2065 119 162 11 chr6 188622300 188622670 -656884 - MSTA LTR MaLR -2 426 1 261 137 53 32 chr6 188623593 188623688 -655866 + CT-rich Low_complexity Low_complexity 6 102 0 261 286 0 11 chr6 188623731 188623822 -655732 - MLT1I LTR MaLR -2 407 318 288 315 46 8 chr6 188624748 188624878 -654676 - MIR3 SINE MIR -24 184 50 * 542 242 25 19 chr6 188624847 188625004 -654550 - MER5A DNA MER1_type -29 160 3 229 252 75 94 chr6 188625917 188626076 -653478 - MLT1I LTR MaLR -365 190 35 190 259 74 0 chr6 188627810 188627864 -651690 - L2 LINE L2 -1 3271 3214 264 199 250 18 chr6 188629181 188629290 -650264 + L2 LINE L2 3122 3296 -17 280 82 0 0 chr6 188630508 188630557 -648997 + Alu SINE Alu 254 302 0 222 211 0 0 chr6 188633767 188633805 -645749 + MIR SINE MIR 111 148 -60 230 309 6 36 chr6 188639880 188640048 -639506 + (CAGGG)n Simple_repeat Simple_repeat 2 164 0 231 242 137 32 chr6 188640493 188640588 -638966 + MIR3 SINE MIR 88 192 -16 363 263 0 0 chr6 188642832 188642950 -636604 + (CA)n Simple_repeat Simple_repeat 2 119 0 1685 245 52 16 chr6 188644437 188644882 -634672 + MLT1C LTR MaLR 4 464 -3 204 125 0 0 chr6 188645227 188645259 -634295 + (TCCC)n Simple_repeat Simple_repeat 3 34 0 2325 95 0 0 chr6 188646207 188646511 -633043 - AluSx SINE Alu -8 304 1 340 87 0 87 chr6 188647309 188647347 -632207 - AluJo SINE Alu 0 302 271 2716 143 35 93 chr6 188647347 188647885 -631669 + MER84 LTR ERV1 1 507 0 340 87 0 87 chr6 188647885 188647915 -631639 - AluJo SINE Alu -31 271 240 1221 109 5 36 chr6 188647920 188648113 -631441 - AluJo SINE Alu -125 187 1 2920 255 29 4 chr6 188648193 188648992 -630562 - L1MC2 LINE L1 -12 6332 5514 373 303 117 31 chr6 188649458 188649620 -629934 - L1ME4a LINE L1 0 6121 5946 377 362 35 22 chr6 188650820 188651049 -628505 - L2 LINE L2 -41 3272 3041 361 215 94 34 chr6 188651161 188651310 -628244 + L2 LINE L2 2888 3045 -268 22 35 0 0 chr6 188651901 188651930 -627624 + GC_rich Low_complexity Low_complexity 1 29 0 364 354 0 0 chr6 188652353 188652500 -627054 + C-rich Low_complexity Low_complexity 1 147 0 23 0 0 0 chr6 188657570 188657593 -621961 + GC_rich Low_complexity Low_complexity 1 23 0 929 101 14 22 chr6 188658695 188658857 -620697 - AluSq SINE Alu 0 309 149 212 262 0 16 chr6 188658857 188658918 -620636 + MIR SINE MIR 91 150 -112 415 290 12 25 chr6 188659038 188659200 -620354 + L1MC1 LINE L1 6102 6261 -72 727 164 0 17 chr6 188659301 188659417 -620137 + L1MC1 LINE L1 6220 6333 0 2541 114 19 6 chr6 188660267 188660626 -618928 + THE1B LTR MaLR 1 364 0 1082 207 55 4 chr6 188660742 188661017 -618537 - MLT1A1 LTR MaLR 0 365 77 676 143 91 17 chr6 188661011 188661186 -618368 - MLT1A1 LTR MaLR -177 188 1 * 235 185 246 0 chr6 188661830 188661895 -617659 + MER5A DNA MER1_type 6 86 -103 553 301 127 44 chr6 188662758 188663550 -616004 - L2 LINE L2 -11 3261 2405 1651 180 7 7 chr6 188666149 188666454 -613100 + AluSx SINE Alu 4 308 -4 274 313 0 0 chr6 188670866 188670933 -608621 + MIR SINE MIR 84 150 -112 336 321 9 0 chr6 188671576 188671685 -607869 - L1MB7 LINE L1 -9 6175 6066 242 330 0 0 chr6 188672601 188672719 -606835 + (CA)n Simple_repeat Simple_repeat 2 119 0 180 0 0 0 chr6 188673224 188673244 -606310 + (GGGA)n Simple_repeat Simple_repeat 2 21 0 2455 102 44 11 chr6 188676789 188677150 -602404 - THE1C LTR MaLR -2 373 1 464 254 47 6 chr6 188678432 188678601 -600953 + (CA)n Simple_repeat Simple_repeat 2 177 0 308 224 41 0 chr6 188678655 188678825 -600729 + (CA)n Simple_repeat Simple_repeat 2 178 0 404 223 35 22 chr6 188678846 188679165 -600389 + (CA)n Simple_repeat Simple_repeat 1 323 0 1269 169 44 25 chr6 188682845 188683117 -596437 - MLT2D LTR ERVL -39 481 107 294 29 0 0 chr6 188683117 188683152 -596402 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 1257 90 0 0 chr6 188683156 188683333 -596221 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 1307 169 109 8 chr6 188683334 188683582 -595972 - AluJo SINE Alu -39 273 1 330 233 27 0 chr6 188683595 188683668 -595886 - MLT2D LTR ERVL -364 100 26 342 155 17 0 chr6 188684116 188684159 -595395 - MER58A DNA MER1_type 0 224 181 503 265 15 7 chr6 188684159 188684295 -595259 - MER58A DNA MER1_type 0 137 1 974 225 169 7 chr6 188684854 188685138 -594416 - MER2 DNA MER2_type -9 336 7 1704 186 0 10 chr6 188685406 188685697 -593857 - AluJo SINE Alu -24 288 1 2407 96 3 0 chr6 188686981 188687308 -592246 - AluSp SINE Alu 0 313 1 214 200 0 50 chr6 188688020 188688100 -591454 + GA-rich Low_complexity Low_complexity 3 78 0 446 293 101 49 chr6 188688180 188688467 -591087 + HAL1b LINE L1 360 661 -687 579 96 0 0 chr6 188688477 188688560 -590994 + (TC)n Simple_repeat Simple_repeat 2 84 0 1723 158 3 25 chr6 188688578 188688862 -590692 + AluJo SINE Alu 1 278 -34 2050 119 11 3 chr6 188688893 188689179 -590375 + AluSg SINE Alu 1 288 -22 870 43 17 0 chr6 188689486 188689601 -589953 + LTR12 LTR ERV1 169 285 -429 300 244 11 0 chr6 188689601 188689691 -589863 + LTR30 LTR ERV1 552 642 -80 740 108 0 0 chr6 188689692 188689794 -589760 + LTR12 LTR ERV1 480 581 -133 326 219 0 0 chr6 188689879 188689952 -589602 + MLT1J1 LTR MaLR 249 321 -125 464 273 118 31 chr6 188690378 188690667 -588887 + L1MEd LINE L1 914 1227 -4892 2451 98 0 0 chr6 188691868 188692173 -587381 - AluSx SINE Alu -7 305 1 701 86 0 0 chr6 188692174 188692267 -587287 - AluS SINE Alu -218 94 2 270 0 0 0 chr6 188692488 188692518 -587036 + (A)n Simple_repeat Simple_repeat 1 30 0 978 131 15 0 chr6 188693241 188693378 -586176 + AluSq/x SINE Alu 1 139 -173 2173 136 10 0 chr6 188693379 188693681 -585873 + AluSx SINE Alu 7 311 -1 203 167 0 0 chr6 188694153 188694195 -585359 + A-rich Low_complexity Low_complexity 1 42 0 948 159 0 0 chr6 188694368 188694513 -585041 + FRAM SINE Alu 20 164 -12 352 261 73 56 chr6 188694528 188694923 -584631 + L1MEd LINE L1 855 1256 -4863 495 271 21 14 chr6 188695044 188695188 -584366 + MER92B LTR ERV1 1 145 -491 904 207 31 9 chr6 188695204 188695426 -584128 + L1MB3 LINE L1 5955 6181 -2 869 235 65 0 chr6 188695754 188696014 -583540 - L1M4 LINE L1 -1287 4859 4583 737 274 70 29 chr6 188696089 188696502 -583052 - L1MEc LINE L1 -4166 2397 1968 400 307 95 2 chr6 188696504 188696757 -582797 - L1MEc LINE L1 -835 1908 1551 2191 92 7 0 chr6 188696772 188697078 -582476 - AluSc SINE Alu 0 312 5 419 232 24 8 chr6 188697216 188697341 -582213 - L1MB3 LINE L1 -2 6181 6055 1620 254 121 23 chr6 188697367 188698068 -581486 - L1MEc LINE L1 -5230 1333 564 1844 188 9 3 chr6 188698421 188698751 -580803 - MER47A DNA MER2_type 0 366 35 802 227 16 16 chr6 188699027 188699221 -580333 + MER58A DNA MER1_type 29 222 -2 183 42 0 0 chr6 188699717 188699741 -579813 + (TG)n Simple_repeat Simple_repeat 2 25 0 189 389 22 0 chr6 188700146 188700236 -579318 + L2 LINE L2 2625 2716 -598 24 0 0 0 chr6 188702911 188702935 -576619 + AT_rich Low_complexity Low_complexity 1 24 0 12421 212 28 48 chr6 188702951 188708775 -570779 + L1M2c LINE L1 11 5711 -1077 1904 160 59 17 chr6 188709019 188709375 -570179 + LTR51 LTR ERV1 1 371 -300 431 169 0 0 chr6 188709373 188709444 -570110 + LTR51 LTR ERV1 601 671 0 * 2220 114 10 3 chr6 188709495 188709801 -569753 - AluSq SINE Alu -3 310 3 320 200 111 0 chr6 188709840 188709930 -569624 + L1MA9 LINE L1 6209 6308 -4 238 332 20 57 chr6 188710379 188710600 -568954 - L1MC5 LINE L1 -61 7900 7687 793 134 8 22 chr6 188710600 188710734 -568820 + FLAM_C SINE Alu 2 133 0 238 332 20 57 chr6 188710734 188710756 -568798 - L1MC5 LINE L1 -274 7687 7666 633 284 31 31 chr6 188710797 188710993 -568561 + MER34 LTR ERV1 11 209 -333 3150 73 20 9 chr6 188710993 188711432 -568122 + MLT2A1 LTR ERVL 1 444 0 633 284 31 31 chr6 188711432 188711489 -568065 + MER34 LTR ERV1 208 264 -278 485 264 47 0 chr6 188711577 188711725 -567829 + MER34 LTR ERV1 388 542 0 323 266 120 56 chr6 188712303 188712570 -566984 - L1MC5 LINE L1 -755 7206 6923 386 350 147 3 chr6 188712620 188712954 -566600 - L1MC4a LINE L1 -925 6883 6502 3095 137 39 12 chr6 188713816 188714329 -565225 + MER1A DNA MER1_type 1 527 0 791 209 121 23 chr6 188715442 188715657 -563897 + MER46A DNA MER2_type 1 236 0 274 237 24 53 chr6 188716227 188716396 -563158 + (GGGTG)n Simple_repeat Simple_repeat 3 166 0 272 269 29 57 chr6 188716431 188716606 -562948 + G-rich Low_complexity Low_complexity 5 174 0 * 288 206 33 65 chr6 188716575 188716759 -562795 + (GGGTG)n Simple_repeat Simple_repeat 3 180 0 2315 102 0 3 chr6 188717576 188717881 -561673 - AluSx SINE Alu -8 304 1 310 238 25 0 chr6 188718575 188718655 -560899 + MIR SINE MIR 171 252 -10 340 348 0 11 chr6 188719134 188719315 -560239 + C-rich Low_complexity Low_complexity 2 180 0 222 321 8 23 chr6 188719671 188719802 -559752 + C-rich Low_complexity Low_complexity 5 133 0 1163 255 51 5 chr6 188720585 188721033 -558521 + LTR69 LTR ERVL 73 582 -6 2169 94 7 0 chr6 188721281 188721558 -557996 + AluSx SINE Alu 2 280 -32 21 0 0 0 chr6 188721558 188721579 -557975 + GC_rich Low_complexity Low_complexity 1 21 0 2235 99 7 0 chr6 188721873 188722167 -557387 - AluSx SINE Alu -15 297 2 2109 135 3 6 chr6 188724427 188724758 -554796 + AluY SINE Alu 1 311 0 2314 58 4 4 chr6 188724760 188725037 -554517 + AluY SINE Alu 1 277 -34 778 264 116 32 chr6 188728033 188728412 -551142 - MLT1D LTR MaLR -5 500 90 280 178 49 135 chr6 188728820 188728867 -550687 + L1MB8 LINE L1 6037 6086 -98 643 249 129 33 chr6 188728867 188729200 -550354 + MLT1A1 LTR MaLR 1 365 0 280 178 49 135 chr6 188729200 188729307 -550247 + L1MB8 LINE L1 6086 6184 0 946 308 65 0 chr6 188729796 188730121 -549433 + MER7A DNA MER2_type 3 346 0 1970 139 27 9 chr6 188730847 188731178 -548376 - MER1B DNA MER1_type 0 337 1 2071 202 72 16 chr6 188731356 188731898 -547656 - L1MB8 LINE L1 -2 6176 5560 683 124 4 233 chr6 188732145 188732420 -547134 + MER51C LTR ERV1 429 640 0 624 194 19 89 chr6 188732420 188732702 -546852 - L1MB8 LINE L1 -621 5563 5263 2351 103 3 3 chr6 188732702 188733013 -546541 - AluSx SINE Alu -1 311 1 815 172 0 15 chr6 188733019 188733153 -546401 - FLAM_C SINE Alu 0 133 2 624 194 19 89 chr6 188733153 188733269 -546285 - L1MB8 LINE L1 -926 5258 4268 232 254 56 0 chr6 188733281 188733352 -546202 + L1 LINE L1 2705 2779 -3367 974 264 27 3 chr6 188733355 188733650 -545904 - L1MB8 LINE L1 -3392 2754 2453 335 291 57 83 chr6 188733650 188733880 -545674 - L1MEc LINE L1 -4438 1958 1735 3221 220 95 58 chr6 188733910 188734284 -545270 - L1M4c LINE L1 -4451 2687 2328 1976 133 75 26 chr6 188734284 188734630 -544924 - THE1B LTR MaLR -1 363 1 3221 220 95 58 chr6 188734630 188735845 -543709 - L1M4c LINE L1 -4810 2328 1160 2541 76 0 0 chr6 188735845 188736146 -543408 - AluSc SINE Alu -8 301 1 3221 220 95 58 chr6 188736146 188736216 -543338 - L1M4c LINE L1 -5978 1160 1094 2117 159 10 23 chr6 188736216 188736607 -542947 + MLT1B LTR MaLR 5 390 0 3221 220 95 58 chr6 188736607 188737155 -542399 - L1M4c LINE L1 -6044 1094 126 4921 125 22 17 chr6 188737155 188737930 -541624 + MER4E LTR ERV1 1 779 0 3221 220 95 58 chr6 188737930 188737968 -541586 - L1M4c LINE L1 -7012 126 91 193 268 10 113 chr6 188738488 188738585 -540969 + L2 LINE L2 3137 3223 -49 304 122 0 149 chr6 188738625 188738929 -540625 + (GGGGA)n Simple_repeat Simple_repeat 1 258 0 283 120 0 154 chr6 188738961 188739169 -540385 + (GGGGA)n Simple_repeat Simple_repeat 2 177 0 357 209 0 134 chr6 188739173 188739374 -540180 + G-rich Low_complexity Low_complexity 3 176 0 587 206 87 11 chr6 188740578 188740762 -538792 + Charlie5 DNA MER1_type 2340 2537 -75 402 218 38 41 chr6 188741189 188741418 -538136 + MER31B LTR ERV1 134 437 -29 495 192 58 33 chr6 188743991 188744111 -535443 - L1MA7 LINE L1 -182 6109 5987 21 0 0 0 chr6 188749231 188749252 -530302 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr6 188750603 188750623 -528931 + (TCC)n Simple_repeat Simple_repeat 2 21 0 204 160 20 20 chr6 188750697 188750747 -528807 + G-rich Low_complexity Low_complexity 6 55 0 441 0 0 0 chr6 188751973 188752022 -527532 + (CA)n Simple_repeat Simple_repeat 2 50 0 186 103 0 0 chr6 188754284 188754313 -525241 + (CA)n Simple_repeat Simple_repeat 2 30 0 186 303 144 32 chr6 188754919 188755107 -524447 - L3 LINE CR1 -154 1423 1215 258 260 27 0 chr6 188755383 188755456 -524098 - L3 LINE CR1 -19 1558 1484 23 0 0 0 chr6 188755555 188755578 -523976 + AT_rich Low_complexity Low_complexity 1 23 0 1906 143 82 0 chr6 188758297 188758625 -520929 - MER46B DNA MER2_type -6 230 1 488 293 103 40 chr6 188759869 188760248 -519306 - L2 LINE L2 -832 2482 2080 2219 116 3 0 chr6 188760494 188760797 -518757 - AluSx SINE Alu -4 308 5 219 324 0 15 chr6 188761042 188761110 -518444 + L2 LINE L2 3243 3309 -4 21 0 0 0 chr6 188763554 188763575 -515979 + AT_rich Low_complexity Low_complexity 1 21 0 875 181 52 16 chr6 188763917 188764110 -515444 + MER58A DNA MER1_type 22 221 -3 203 236 0 0 chr6 188764492 188764547 -515007 + CT-rich Low_complexity Low_complexity 3 57 0 874 96 30 44 chr6 188765637 188765772 -513782 + FLAM_C SINE Alu 1 133 0 246 32 0 0 chr6 188766209 188766240 -513314 + (CA)n Simple_repeat Simple_repeat 2 32 0 569 204 44 7 chr6 188769017 188769154 -510400 - MER58C DNA MER1_type 0 215 74 2389 63 7 17 chr6 188769154 188769455 -510099 + AluY SINE Alu 1 298 -13 24 0 0 0 chr6 188770862 188770886 -508668 + AT_rich Low_complexity Low_complexity 1 24 0 5490 178 81 14 chr6 188770903 188772057 -507497 + Tigger3b DNA MER2_type 1 1231 0 196 119 214 0 chr6 188772256 188772298 -507256 - L2 LINE L2 -3 3269 3219 257 250 0 60 chr6 188772442 188772542 -507012 + MIR SINE MIR 118 211 -51 23 0 0 0 chr6 188772976 188772999 -506555 + AT_rich Low_complexity Low_complexity 1 23 0 276 53 0 0 chr6 188774522 188774560 -504994 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 28 48 0 0 chr6 188776405 188776447 -503107 + AT_rich Low_complexity Low_complexity 1 42 0 299 265 118 10 chr6 188776747 188776849 -502705 - L2 LINE L2 -1 3312 3200 639 147 0 0 chr6 188778879 188778974 -500580 + FLAM_C SINE Alu 31 125 -18 951 201 149 28 chr6 188780164 188780453 -499101 + MER33 DNA MER1_type 1 324 0 22 35 0 0 chr6 188783155 188783184 -496370 + AT_rich Low_complexity Low_complexity 1 29 0 209 359 28 21 chr6 188784394 188784536 -495018 - MIR SINE MIR -96 166 24 489 222 54 184 chr6 188784935 188785616 -493938 + L2 LINE L2 2214 2806 -508 417 235 87 7 chr6 188785621 188785770 -493784 + MER58B DNA MER1_type 176 336 -5 1568 198 3 13 chr6 188786169 188786472 -493082 - AluJb SINE Alu -12 300 1 208 283 19 75 chr6 188788810 188788916 -490638 + L2 LINE L2 2647 2746 -568 235 158 88 18 chr6 188789472 188789529 -490025 - L2 LINE L2 -9 3304 3244 1410 145 46 30 chr6 188789685 188789947 -489607 + AluJo SINE Alu 33 298 -14 359 325 47 41 chr6 188790735 188790904 -488650 + MER5A DNA MER1_type 14 183 -6 23 0 0 0 chr6 188792269 188792292 -487262 + AT_rich Low_complexity Low_complexity 1 23 0 2368 76 7 7 chr6 188792460 188792764 -486790 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr6 188794565 188794586 -484968 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr6 188794686 188794710 -484844 + AT_rich Low_complexity Low_complexity 1 24 0 650 280 78 14 chr6 188796860 188797078 -482476 - MIR SINE MIR -23 239 8 567 277 109 50 chr6 188798167 188798589 -480965 - L1ME3A LINE L1 -6 6164 5718 1436 201 117 15 chr6 188799987 188800380 -479174 + MLT1C LTR MaLR 3 435 -32 2171 122 84 2 chr6 188800380 188800774 -478780 - Tigger4(Zombi) DNA MER2_type 0 2731 2306 692 220 79 0 chr6 188804414 188804591 -474963 + L1MB5 LINE L1 5975 6165 -9 257 254 8 76 chr6 188806091 188806209 -473345 - MER112 DNA MER1_type -150 110 1 28 71 0 0 chr6 188807040 188807096 -472458 + AT_rich Low_complexity Low_complexity 1 56 0 219 227 68 45 chr6 188808121 188808209 -471345 + MIR SINE MIR 34 123 -85 316 324 90 45 chr6 188810056 188810257 -469297 - L1ME4a LINE L1 -254 5867 5652 2388 77 7 0 chr6 188810257 188810555 -468999 - AluY SINE Alu -11 300 1 316 324 90 45 chr6 188810555 188810597 -468957 - L1ME4a LINE L1 -469 5652 5613 390 314 120 34 chr6 188810598 188810948 -468606 + L1ME4a LINE L1 5704 6083 -38 224 320 48 72 chr6 188811009 188811134 -468420 - L2 LINE L2 0 3313 3192 1136 312 79 44 chr6 188811646 188811868 -467686 - L2 LINE L2 -817 2497 2284 1852 154 7 3 chr6 188811868 188812167 -467387 + AluSx SINE Alu 1 300 -12 1136 312 79 44 chr6 188812167 188812765 -466789 - L2 LINE L2 -1030 2284 1648 447 289 107 30 chr6 188812823 188813217 -466337 + MLT1H LTR MaLR 114 537 -12 205 343 19 19 chr6 188813229 188813334 -466220 - L2 LINE L2 -1668 1646 1542 1729 156 3 36 chr6 188813575 188813908 -465646 + MER44D DNA MER2_type 9 600 -9 2291 103 3 3 chr6 188814264 188814566 -464988 - AluSx SINE Alu -10 302 1 2349 82 10 0 chr6 188818431 188818734 -460820 + AluSc SINE Alu 1 306 -3 246 278 76 56 chr6 188819031 188819175 -460379 - MIR SINE MIR -5 257 111 22 0 0 0 chr6 188819274 188819296 -460258 + AT_rich Low_complexity Low_complexity 1 22 0 340 331 35 21 chr6 188819934 188820079 -459475 + MER5A DNA MER1_type 43 189 0 323 304 70 9 chr6 188823624 188823739 -455815 + L2 LINE L2 3189 3310 -3 21 0 0 0 chr6 188823906 188823927 -455627 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr6 188824921 188824962 -454592 + (CA)n Simple_repeat Simple_repeat 1 41 0 448 174 18 18 chr6 188825881 188825990 -453564 + L1PB3 LINE L1 6043 6151 -3 1438 70 16 0 chr6 188826731 188826917 -452637 + AluSq SINE Alu 97 285 -28 27 29 0 0 chr6 188828530 188828564 -450990 + AT_rich Low_complexity Low_complexity 1 34 0 2179 128 3 6 chr6 188828610 188828923 -450631 + AluSx SINE Alu 1 312 0 1544 85 15 0 chr6 188829330 188829530 -450024 - AluSg/x SINE Alu -7 303 101 277 156 52 26 chr6 188830193 188830270 -449284 - L1ME4a LINE L1 -1 6120 6042 13482 123 57 18 chr6 188830532 188832858 -446696 + Tigger1 DNA MER2_type 1 2418 0 287 244 58 0 chr6 188833038 188833124 -446430 - HAL1 LINE L1 -136 2371 2281 * 1628 270 110 44 chr6 188833122 188833711 -445843 - HAL1 LINE L1 -631 1876 1327 1482 124 113 42 chr6 188833711 188833976 -445578 - AluSg SINE Alu -26 284 1 1628 270 110 44 chr6 188833976 188834431 -445123 - HAL1 LINE L1 -1180 1327 763 508 268 137 55 chr6 188834534 188835008 -444546 - HAL1 LINE L1 -1932 575 63 1532 222 31 9 chr6 188835174 188835598 -443956 + L1ME2 LINE L1 4427 4859 -1287 364 279 108 44 chr6 188836824 188836982 -442572 + MIR3 SINE MIR 36 203 -5 662 269 127 36 chr6 188837222 188837724 -441830 - L2 LINE L2 -49 3264 2733 282 29 0 0 chr6 188837727 188837736 -441818 + (GA)n Simple_repeat Simple_repeat 1 44 0 282 29 0 0 chr6 188837736 188837771 -441783 + (GA)n Simple_repeat Simple_repeat 1 35 0 195 329 80 70 chr6 188839082 188839456 -440098 + L2 LINE L2 2376 2753 -561 562 221 110 67 chr6 188840325 188840624 -438930 + L1MC5 LINE L1 7609 7920 -41 2252 112 7 0 chr6 188841437 188841740 -437814 + AluSp SINE Alu 1 305 -8 25 0 0 0 chr6 188841973 188841998 -437556 + AT_rich Low_complexity Low_complexity 1 25 0 672 207 86 0 chr6 188842101 188842241 -437313 - AluJb SINE Alu -12 300 149 282 209 36 24 chr6 188842510 188842609 -436945 + L1ME2 LINE L1 5312 5410 -949 376 276 54 32 chr6 188842762 188842983 -436571 + L1ME2 LINE L1 5613 5838 -283 224 225 0 0 chr6 188844025 188844065 -435489 + polypyrimidine Low_complexity Low_complexity 2 41 0 646 191 46 0 chr6 188844262 188844393 -435161 + L1ME2 LINE L1 6027 6163 -1 1667 173 0 43 chr6 188847284 188847585 -431969 + AluJo SINE Alu 14 301 -11 568 261 0 9 chr6 188847969 188848084 -431470 - FLAM_A SINE Alu -19 114 1 2269 81 10 10 chr6 188848620 188848927 -430627 + AluSg SINE Alu 3 309 -1 1136 289 95 20 chr6 188849462 188849968 -429586 + MER119 DNA MER1_type 37 580 -3 1587 136 94 23 chr6 188850727 188850992 -428562 - AluJo SINE Alu -22 290 7 204 293 0 32 chr6 188851968 188852047 -427507 + MIR SINE MIR 86 163 -45 269 298 44 39 chr6 188852130 188852285 -427269 - MIR SINE MIR -102 160 1 492 92 53 0 chr6 188852397 188852473 -427081 + MADE1 DNA Mariner 1 80 0 210 320 124 7 chr6 188852774 188852927 -426627 + L2 LINE L2 2635 2805 -509 1184 193 21 9 chr6 188853039 188853272 -426282 - MER46A DNA MER2_type 0 236 1 2241 89 7 0 chr6 188853678 188853969 -425585 + AluSx SINE Alu 2 294 -18 225 163 0 0 chr6 188855232 188855281 -424273 + G-rich Low_complexity Low_complexity 4 52 0 272 261 216 30 chr6 188855708 188855842 -423712 + MIR SINE MIR 89 247 -15 233 316 35 53 chr6 188855848 188855962 -423592 + L2 LINE L2 3166 3277 -36 207 0 0 0 chr6 188856163 188856186 -423368 + (A)n Simple_repeat Simple_repeat 1 23 0 204 40 0 0 chr6 188857249 188857274 -422280 + (A)n Simple_repeat Simple_repeat 1 25 0 211 267 53 40 chr6 188857477 188857552 -422002 + MIR SINE MIR 96 171 -91 254 191 170 57 chr6 188858531 188858672 -420882 - Charlie4a DNA MER1_type -113 395 239 407 215 15 67 chr6 188858672 188858807 -420747 - Charlie4a DNA MER1_type -378 130 3 447 354 87 0 chr6 188858892 188859087 -420467 - L3 LINE CR1 -985 592 381 297 274 28 28 chr6 188859593 188859699 -419855 + MIR SINE MIR 117 222 -40 2387 188 57 23 chr6 188859929 188860460 -419094 - MER44D DNA MER2_type -1 604 1 26 0 0 0 chr6 188860963 188860989 -418565 + AT_rich Low_complexity Low_complexity 1 26 0 375 301 100 47 chr6 188861648 188861987 -417567 + L1MC5 LINE L1 4877 5233 -913 1063 295 101 24 chr6 188862008 188862682 -416872 + L1MC5 LINE L1 5255 5980 -1828 21 0 0 0 chr6 188863116 188863137 -416417 + AT_rich Low_complexity Low_complexity 1 21 0 1000 253 158 85 chr6 188863161 188864289 -415265 + L1MC5 LINE L1 6562 7775 -186 300 301 146 40 chr6 188864608 188864807 -414747 + MIR SINE MIR 37 256 -6 1183 137 39 5 chr6 188864868 188865072 -414482 + L1PA12 LINE L1 5958 6168 0 487 119 60 12 chr6 188865257 188865341 -414213 + AluSq SINE Alu 131 218 -95 431 125 159 11 chr6 188865357 188865445 -414109 + AluSp/q SINE Alu 184 284 -29 798 282 44 20 chr6 188867110 188867362 -412192 - MIR SINE MIR -3 259 2 249 302 189 15 chr6 188867657 188867922 -411632 + L1MC/D LINE L1 5541 5851 -1957 1488 280 208 52 chr6 188868297 188869257 -410297 - L2 LINE L2 -338 2976 1867 1724 106 117 46 chr6 188870207 188870557 -408997 + THE1C LTR MaLR 1 375 0 1783 114 91 0 chr6 188870666 188870963 -408591 + AluSp SINE Alu 3 323 0 457 273 107 88 chr6 188871117 188871178 -408376 + L1ME LINE L1 5335 5393 -728 1930 174 0 6 chr6 188871178 188871489 -408065 + AluJb SINE Alu 2 310 -2 457 273 107 88 chr6 188871489 188871856 -407698 + L1ME LINE L1 5393 5769 -352 562 186 59 10 chr6 188872013 188872115 -407439 + FLAM_A SINE Alu 9 115 -27 306 0 0 0 chr6 188872118 188872152 -407402 + (CA)n Simple_repeat Simple_repeat 2 35 0 205 254 0 18 chr6 188874389 188874444 -405110 + GA-rich Low_complexity Low_complexity 1 54 0 227 311 132 52 chr6 188874779 188875226 -404328 + L2 LINE L2 2001 2483 -831 687 284 82 20 chr6 188875680 188875983 -403571 - MLT1I LTR MaLR -25 384 63 184 348 43 71 chr6 188876108 188876390 -403164 + L2 LINE L2 2971 3244 -28 200 259 0 19 chr6 188876824 188876878 -402676 + L2 LINE L2 3261 3313 0 736 282 57 25 chr6 188878531 188878776 -400778 + MIR SINE MIR 8 260 -2 26 30 0 0 chr6 188878918 188878951 -400603 + AT_rich Low_complexity Low_complexity 1 33 0 30 0 0 0 chr6 188879253 188879283 -400271 + AT_rich Low_complexity Low_complexity 1 30 0 3604 218 62 11 chr6 188880483 188881337 -398217 + Charlie1a DNA MER1_type 1 901 -1860 1635 164 3 27 chr6 188881337 188881629 -397925 - AluJo SINE Alu -18 294 10 3604 218 62 11 chr6 188881629 188881646 -397908 + Charlie1a DNA MER1_type 901 916 -539 198 0 0 0 chr6 188881856 188881878 -397676 + (A)n Simple_repeat Simple_repeat 1 22 0 2141 110 19 0 chr6 188881912 188882229 -397325 + L1PB1 LINE L1 5828 6150 -1 358 215 0 0 chr6 188883335 188883400 -396154 - MER94 DNA DNA -28 106 42 2139 132 16 0 chr6 188885099 188885402 -394152 + AluSx SINE Alu 1 308 -4 191 268 294 31 chr6 188885921 188886115 -393439 - L2 LINE L2 -3 3269 3025 56 55 0 0 chr6 188888718 188888809 -390745 + GC_rich Low_complexity Low_complexity 1 91 0 21 71 0 0 chr6 188888853 188888895 -390659 + GC_rich Low_complexity Low_complexity 1 42 0 193 114 0 45 chr6 188888952 188888996 -390558 + (AGGGGG)n Simple_repeat Simple_repeat 2 43 0 202 176 0 44 chr6 188888999 188889067 -390487 + G-rich Low_complexity Low_complexity 2 66 0 21 0 0 0 chr6 188889224 188889245 -390309 + GC_rich Low_complexity Low_complexity 1 21 0 331 242 11 44 chr6 188889295 188889477 -390077 + C-rich Low_complexity Low_complexity 5 180 0 * 395 200 33 33 chr6 188889383 188889563 -389991 + (CCGCG)n Simple_repeat Simple_repeat 1 180 0 2299 84 6 26 chr6 188892318 188892629 -386925 + AluY SINE Alu 1 305 -6 2157 115 133 38 chr6 188893917 188894308 -385246 + MSTA LTR MaLR 1 428 0 375 23 0 0 chr6 188894334 188894378 -385176 + (TG)n Simple_repeat Simple_repeat 1 44 0 2488 44 0 3 chr6 188894723 188895016 -384538 + AluY SINE Alu 1 292 -19 21 36 0 0 chr6 188895798 188895826 -383728 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 188895878 188895906 -383648 + AT_rich Low_complexity Low_complexity 1 28 0 1273 212 70 3 chr6 188896881 188897209 -382345 + L1PA16 LINE L1 5796 6162 -6 1948 106 38 38 chr6 188897220 188897343 -382211 + AluSg SINE Alu 1 123 -187 2170 94 3 29 chr6 188897343 188897652 -381902 + AluSp SINE Alu 1 301 -12 1948 106 38 38 chr6 188897652 188897821 -381733 + AluSg SINE Alu 122 293 -17 408 323 92 32 chr6 188897829 188898207 -381347 + L1MEd LINE L1 984 1445 -1045 632 228 80 21 chr6 188898711 188898948 -380606 - L1MC5 LINE L1 -101 7860 7610 248 316 51 10 chr6 188898988 188899086 -380468 + MER5A DNA MER1_type 88 189 0 2483 72 3 3 chr6 188899346 188899652 -379902 + AluY SINE Alu 1 306 -5 302 226 93 44 chr6 188900383 188900527 -379027 + MLT1I LTR MaLR 32 178 -231 252 260 41 0 chr6 188900693 188900766 -378788 + MLT1I LTR MaLR 322 397 -12 2556 78 0 0 chr6 188901349 188901657 -377897 - AluSx SINE Alu -1 311 4 1872 136 0 10 chr6 188901886 188902180 -377374 - AluSx SINE Alu 0 312 22 24 0 0 0 chr6 188902193 188902217 -377337 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 188902596 188902617 -376937 + AT_rich Low_complexity Low_complexity 1 21 0 1169 164 78 9 chr6 188902806 188903025 -376529 - MER46A DNA MER2_type -2 234 1 543 248 0 8 chr6 188903192 188903313 -376241 + MER58 DNA MER1_type 1 120 -221 2374 82 10 3 chr6 188903401 188903704 -375850 + AluSc SINE Alu 1 305 -4 210 91 0 0 chr6 188903899 188903932 -375622 + (TTAGGG)n Simple_repeat Simple_repeat 2 34 0 268 277 42 25 chr6 188904371 188904490 -375064 - HAL1 LINE L1 -629 1878 1758 2424 287 102 49 chr6 188904644 188907294 -372260 - L1ME3A LINE L1 -26 6144 3356 522 99 0 0 chr6 188907280 188907351 -372203 - L1MB8 LINE L1 -270 5908 5838 * 2250 105 3 6 chr6 188907363 188907677 -371877 - AluSq SINE Alu 0 313 1 21 57 0 0 chr6 188907945 188907980 -371574 + AT_rich Low_complexity Low_complexity 1 35 0 513 223 27 0 chr6 188908224 188908336 -371218 + L1MA10 LINE L1 6210 6324 -10 192 77 0 0 chr6 188909168 188909194 -370360 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 491 61 45 0 chr6 188909196 188909262 -370292 - AluSq/x SINE Alu -186 127 59 2016 111 0 0 chr6 188909262 188909524 -370030 - AluSx SINE Alu -50 262 1 289 298 30 23 chr6 188909604 188909735 -369819 + MIR SINE MIR 32 163 -99 1473 254 12 3 chr6 188909810 188910156 -369398 + LTR40a LTR ERVL 166 514 -5 952 201 19 46 chr6 188913009 188913268 -366286 - L1MB8 LINE L1 -7 6171 5920 476 218 32 0 chr6 188913280 188913404 -366150 + LTR33 LTR ERVL 394 521 0 1706 209 67 5 chr6 188914018 188914391 -365163 - MSTD LTR MaLR 0 396 1 279 336 37 48 chr6 188914444 188914739 -364815 - L2 LINE L2 -1160 2154 1863 255 157 0 0 chr6 188915172 188915223 -364331 + GA-rich Low_complexity Low_complexity 1 51 0 2349 107 0 0 chr6 188915917 188916216 -363338 - AluSx SINE Alu -11 301 3 187 296 14 0 chr6 188917577 188917648 -361906 - MIR SINE MIR -99 163 92 376 139 25 0 chr6 188918075 188918154 -361400 - Charlie5 DNA MER1_type -33 2579 2499 2077 153 48 46 chr6 188918305 188918722 -360832 - LTR3 LTR ERVK -10 422 5 273 115 88 18 chr6 188921314 188921427 -358127 + (TCTA)n Simple_repeat Simple_repeat 4 124 0 194 149 75 0 chr6 188921448 188921515 -358039 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 341 335 23 18 chr6 188922013 188922234 -357320 - L2 LINE L2 0 3313 3092 1668 205 31 17 chr6 188923215 188923325 -356229 + MER46B DNA MER2_type 1 108 -2623 2889 70 0 0 chr6 188923325 188923680 -355874 - THE1A LTR MaLR 0 355 1 1668 205 31 17 chr6 188923680 188923925 -355629 + MER46B DNA MER2_type 108 236 0 461 231 127 18 chr6 188924276 188924497 -355057 + L1ME3A LINE L1 5919 6163 -7 236 256 37 0 chr6 188925392 188925474 -354080 + MER53 DNA DNA 1 85 -104 326 192 0 88 chr6 188925911 188926104 -353450 + G-rich Low_complexity Low_complexity 4 179 0 * 384 253 16 39 chr6 188926033 188926361 -353193 + (GGGTG)n Simple_repeat Simple_repeat 1 320 0 218 283 7 51 chr6 188926367 188926505 -353049 + G-rich Low_complexity Low_complexity 6 137 0 667 228 115 65 chr6 188926607 188926963 -352591 - MLT1A2 LTR MaLR 0 374 1 331 104 15 30 chr6 188927095 188927162 -352392 + (GAAA)n Simple_repeat Simple_repeat 2 67 0 191 290 14 14 chr6 188927499 188927568 -351986 - MIR3 SINE MIR -48 160 92 231 273 0 45 chr6 188927569 188927635 -351919 - L2 LINE L2 0 3313 3251 717 239 0 0 chr6 188930002 188930144 -349410 + FLAM_C SINE Alu 2 143 0 2482 42 28 0 chr6 188930228 188930517 -349037 + AluY SINE Alu 1 297 -14 2533 57 0 0 chr6 188930679 188930980 -348574 - AluY SINE Alu -10 301 1 361 280 66 79 chr6 188930991 188931333 -348221 - L1ME4a LINE L1 -164 5957 5621 2178 114 3 13 chr6 188931333 188931648 -347906 - AluSx SINE Alu 0 312 1 361 280 66 79 chr6 188931648 188931787 -347767 - L1ME4a LINE L1 -500 5621 5482 28 48 0 0 chr6 188931907 188931949 -347605 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr6 188932196 188932217 -347337 + AT_rich Low_complexity Low_complexity 1 21 0 567 0 0 0 chr6 188932908 188932971 -346583 + (TTCC)n Simple_repeat Simple_repeat 4 66 0 183 42 0 0 chr6 188932971 188932995 -346559 + (TC)n Simple_repeat Simple_repeat 2 25 0 794 239 0 71 chr6 188933409 188933664 -345890 + MLT2D LTR ERVL 178 414 0 272 325 24 0 chr6 188933773 188933856 -345698 + MER5A DNA MER1_type 3 87 -102 386 284 200 7 chr6 188933889 188934044 -345510 + MIR SINE MIR 5 189 -73 1560 147 73 15 chr6 188935264 188935537 -344017 - AluJo SINE Alu -21 291 3 799 238 159 22 chr6 188936313 188936633 -342921 + MLT1A1 LTR MaLR 1 364 -1 187 229 0 0 chr6 188937069 188937104 -342450 + L2 LINE L2 3018 3052 -220 193 358 30 30 chr6 188937422 188937556 -341998 + MIR SINE MIR 78 211 -51 2351 74 7 0 chr6 188937953 188938249 -341305 - AluSx SINE Alu -14 298 1 2149 137 0 0 chr6 188940004 188940297 -339257 - AluSx SINE Alu -19 293 1 1569 158 14 11 chr6 188940581 188940860 -338694 + L1MC1 LINE L1 6053 6332 -1 1237 221 58 3 chr6 188940860 188941186 -338368 + L1MB7 LINE L1 5824 6167 -17 28 0 0 0 chr6 188942049 188942077 -337477 + AT_rich Low_complexity Low_complexity 1 28 0 2178 131 0 3 chr6 188942184 188942496 -337058 - AluSq SINE Alu -2 311 1 198 0 0 0 chr6 188942561 188942583 -336971 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1626 169 58 0 chr6 188942589 188942850 -336704 - AluJo SINE Alu -36 276 1 2274 72 0 4 chr6 188943493 188943804 -335750 - AluY SINE Alu 0 315 6 551 226 53 101 chr6 188943972 188944290 -335264 + L2 LINE L2 3011 3313 0 189 0 0 0 chr6 188945509 188945530 -334024 + (CCCTAA)n Simple_repeat Simple_repeat 2 22 0 1938 190 42 5 chr6 188950221 188950627 -328927 + MSTB LTR MaLR 6 426 0 264 356 35 52 chr6 188951611 188951796 -327758 - MIR SINE MIR -11 197 17 312 329 36 0 chr6 188952346 188952483 -327071 + MIR SINE MIR 99 240 -22 2574 93 11 3 chr6 188952681 188953047 -326507 - THE1C LTR MaLR -6 369 1 1515 87 5 0 chr6 188953270 188953479 -326075 + AluSp SINE Alu 100 309 0 183 162 0 0 chr6 188954511 188954548 -325006 + GA-rich Low_complexity Low_complexity 2 38 0 368 299 217 11 chr6 188954604 188954788 -324766 + MIR SINE MIR 4 225 -37 194 302 0 0 chr6 188955161 188955204 -324350 - L2 LINE L2 0 3313 3271 222 37 0 0 chr6 188955616 188955643 -323911 + (GGGTG)n Simple_repeat Simple_repeat 4 30 0 901 308 187 16 chr6 188956343 188957235 -322319 + L2 LINE L2 1511 2555 -759 484 280 268 17 chr6 188958729 188959132 -320422 + L1MC4a LINE L1 5398 5901 -1907 212 204 19 37 chr6 188959595 188959649 -319905 + L2 LINE L2 3261 3313 0 455 305 65 0 chr6 188960852 188961006 -318548 - MIR SINE MIR -16 246 83 24 0 0 0 chr6 188961140 188961164 -318390 + AT_rich Low_complexity Low_complexity 1 24 0 621 191 15 52 chr6 188961792 188961825 -317729 - FLAM_A SINE Alu -180 131 98 2661 78 29 0 chr6 188961825 188962170 -317384 + THE1A LTR MaLR 1 355 0 12276 85 2 4 chr6 188962170 188963754 -315800 + THE1A-int LTR MaLR 1 1580 0 2533 130 3 0 chr6 188963754 188964108 -315446 + THE1A LTR MaLR 1 355 0 621 191 15 52 chr6 188964108 188964208 -315346 - FLAM_A SINE Alu -210 101 1 1552 145 69 26 chr6 188965449 188965921 -313633 - MER4B LTR ERV1 0 766 3 200 294 129 12 chr6 188966094 188966179 -313375 - MIR SINE MIR -80 182 88 2190 118 3 0 chr6 188966238 188966527 -313027 + AluSx SINE Alu 1 290 -22 438 53 0 0 chr6 188966527 188966584 -312970 + (TA)n Simple_repeat Simple_repeat 2 58 0 188 214 18 0 chr6 188968483 188968539 -311015 + (CA)n Simple_repeat Simple_repeat 1 57 0 654 204 6 17 chr6 188968602 188968783 -310771 + CT-rich Low_complexity Low_complexity 1 179 0 188 375 0 0 chr6 188970416 188970496 -309058 - MIR SINE MIR -99 109 30 262 263 152 30 chr6 188971106 188971205 -308349 + MIR SINE MIR 31 141 -121 684 295 92 16 chr6 188972261 188972630 -306924 - MLT2C1 LTR ERVL 0 397 1 3860 196 85 10 chr6 188972630 188973525 -306029 - ERVL-C1 LTR ERVL -8 5756 4795 416 258 17 25 chr6 188974125 188974245 -305309 - L2 LINE L2 0 3313 3195 3748 246 63 44 chr6 188974551 188974697 -304857 + L1ME2 LINE L1 3865 4007 -2163 877 142 0 0 chr6 188974697 188974824 -304730 + FLAM_A SINE Alu 1 127 -6 3748 246 63 44 chr6 188974824 188976256 -303298 + L1ME2 LINE L1 4007 5474 -696 1043 304 107 16 chr6 188976262 188976832 -302722 + L1ME2 LINE L1 5543 6164 0 183 426 40 27 chr6 188978236 188978384 -301170 - L2 LINE L2 -1 3271 3122 300 246 0 0 chr6 188981165 188981230 -298324 + MIR SINE MIR 84 148 -114 2145 230 59 37 chr6 188983931 188984547 -295007 - MER50 LTR ERV1 0 734 100 2445 78 0 0 chr6 188984547 188984854 -294700 - AluY SINE Alu -4 307 1 2145 230 59 37 chr6 188984854 188984936 -294618 - MER50 LTR ERV1 -634 100 21 237 267 129 10 chr6 188984951 188985052 -294502 - MLT1K LTR MaLR -136 452 340 2284 116 0 0 chr6 188985415 188985709 -293845 - AluSx SINE Alu -18 294 1 2935 162 16 6 chr6 188985710 188986258 -293296 - L1MC1 LINE L1 -9 6324 5771 5112 215 44 13 chr6 188986258 188987304 -292250 - L1MC1 LINE L1 -432 5901 4771 207 0 0 0 chr6 188987304 188987327 -292227 + (TA)n Simple_repeat Simple_repeat 1 23 0 5112 215 44 13 chr6 188987327 188988160 -291394 - L1MC1 LINE L1 -1562 4771 3965 184 333 53 13 chr6 188989780 188989855 -289699 + MIR SINE MIR 82 159 -103 341 345 161 4 chr6 188990159 188990420 -289134 + L1M4 LINE L1 4877 5178 -968 354 127 13 69 chr6 188990733 188990820 -288734 + MLT1F LTR MaLR 461 595 0 1175 263 36 90 chr6 188990981 188991638 -287916 - L1 LINE L1 -1875 4271 3671 2055 109 32 7 chr6 188991638 188991921 -287633 + AluSq SINE Alu 1 290 -23 1175 263 36 90 chr6 188991921 188992118 -287436 - L1 LINE L1 -2475 3671 3465 324 318 33 40 chr6 188993618 188993769 -285785 - MIR SINE MIR -103 159 10 326 188 0 41 chr6 188994284 188994444 -285110 + MER53 DNA DNA 2 188 -1 2648 75 13 8 chr6 188995835 188996210 -283344 - L1PA8 LINE L1 -3 6169 5793 439 289 26 13 chr6 188996455 188996607 -282947 + MIR SINE MIR 38 191 -71 2067 115 24 48 chr6 188996708 188997081 -282473 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr6 188997188 188997216 -282338 + AT_rich Low_complexity Low_complexity 1 28 0 693 238 14 100 chr6 188997344 188997625 -281929 - MLT1J LTR MaLR -3 508 252 190 351 0 0 chr6 188997988 188998045 -281509 + L2 LINE L2 3185 3241 -31 3560 141 7 0 chr6 188998653 188999243 -280311 - L1PA13 LINE L1 -1 6162 5569 799 249 83 63 chr6 188999350 188999893 -279661 - HAL1b LINE L1 -243 1105 552 2084 197 34 7 chr6 188999917 189000333 -279221 + Tigger2a DNA MER2_type 3 429 -5 287 346 56 41 chr6 189000422 189000688 -278866 - HAL1b LINE L1 -949 399 130 248 123 18 53 chr6 189000697 189000754 -278800 + MER116 DNA Mariner 1 55 -25 231 267 0 0 chr6 189001203 189001263 -278291 + CT-rich Low_complexity Low_complexity 3 62 0 1808 229 34 0 chr6 189002249 189002691 -276863 + MER70B LTR ERVL 20 476 -102 204 322 105 13 chr6 189002734 189002973 -276581 + L2 LINE L2 2015 2275 -1039 351 229 156 24 chr6 189003262 189003467 -276087 + L2 LINE L2 2448 2679 -635 258 316 181 24 chr6 189003476 189003808 -275746 + L2 LINE L2 2878 3261 -52 519 242 99 48 chr6 189006457 189006730 -272824 + MER39 LTR ERV1 420 706 -1 267 218 77 0 chr6 189009003 189009081 -270473 + MLT1H LTR MaLR 76 159 -390 313 201 39 136 chr6 189009435 189009589 -269965 - L1ME4a LINE L1 -53 6068 5930 317 220 8 91 chr6 189009702 189009834 -269720 - L1ME4a LINE L1 -386 5735 5615 190 239 28 28 chr6 189010792 189010863 -268691 - L2 LINE L2 -247 3066 2996 198 248 99 0 chr6 189011869 189011970 -267584 - L2 LINE L2 -377 2936 2826 5926 170 70 1 chr6 189012297 189013446 -266108 + Tigger3b DNA MER2_type 2 1230 -1 2232 105 29 10 chr6 189013575 189013881 -265673 - AluSx SINE Alu 0 312 1 247 266 16 0 chr6 189013961 189014025 -265529 - MER113 DNA MER1_type? -1 520 456 252 298 18 0 chr6 189014142 189014256 -265298 - MER113 DNA MER1_type? -399 122 7 498 83 0 0 chr6 189014728 189014800 -264754 + (TC)n Simple_repeat Simple_repeat 1 72 0 1228 97 0 0 chr6 189014800 189014955 -264599 - AluSg/x SINE Alu -31 281 127 241 268 36 0 chr6 189015537 189015649 -263905 + MER113 DNA MER1_type? 7 122 -399 229 233 92 97 chr6 189016028 189016234 -263320 - MLT1K LTR MaLR -16 572 368 373 379 50 0 chr6 189017705 189017903 -261651 + MIR SINE MIR 9 216 -46 237 178 0 0 chr6 189018728 189018773 -260781 + A-rich Low_complexity Low_complexity 1 45 0 784 290 60 0 chr6 189019154 189019454 -260100 - L1ME4a LINE L1 -190 6000 5683 403 323 96 66 chr6 189020015 189020606 -258948 - L1ME4a LINE L1 -4185 2211 1603 2125 135 6 3 chr6 189020676 189020988 -258566 - AluSq SINE Alu 0 313 1 464 273 118 31 chr6 189021101 189021390 -258164 - L1ME4a LINE L1 -4892 1313 1000 2040 128 13 17 chr6 189021781 189022079 -257475 + AluJb SINE Alu 1 297 -15 654 283 88 0 chr6 189022441 189022692 -256862 - MLT1A1 LTR MaLR -69 296 24 1201 278 53 39 chr6 189025941 189026427 -253127 + MER20B DNA MER1_type 34 526 -257 352 176 29 147 chr6 189026522 189026624 -252930 + MER20B DNA MER1_type 533 645 -138 2282 105 13 0 chr6 189026624 189026928 -252626 - AluSx SINE Alu -4 308 1 352 176 29 147 chr6 189026928 189027104 -252450 + MER20B DNA MER1_type 645 778 -5 500 206 12 75 chr6 189027146 189027306 -252248 + MER33 DNA MER1_type 60 209 -115 225 325 26 18 chr6 189028320 189028434 -251120 - MIR SINE MIR -123 139 25 229 246 18 0 chr6 189032633 189032690 -246864 + MLT1J2 LTR MaLR 346 403 -47 317 257 184 0 chr6 189032735 189032887 -246667 + MER5A DNA MER1_type 3 182 -7 2324 119 3 3 chr6 189033223 189033535 -246019 - AluSx SINE Alu 0 312 1 236 298 119 0 chr6 189034554 189034638 -244916 + MIR SINE MIR 92 185 -77 25 51 0 0 chr6 189034651 189034690 -244864 + AT_rich Low_complexity Low_complexity 1 39 0 623 159 43 7 chr6 189034716 189034854 -244700 - L1MA9 LINE L1 -6 6306 6164 1823 118 103 0 chr6 189035805 189036067 -243487 + AluSc SINE Alu 1 289 -20 225 0 0 0 chr6 189036148 189036173 -243381 + (GA)n Simple_repeat Simple_repeat 2 26 0 2212 138 0 0 chr6 189036727 189037039 -242515 - AluSx SINE Alu 0 312 1 214 328 23 53 chr6 189037948 189038079 -241475 - MIR SINE MIR -115 147 21 200 263 38 0 chr6 189038322 189038402 -241152 + C-rich Low_complexity Low_complexity 6 88 0 626 61 0 24 chr6 189038859 189038941 -240613 - AluSg SINE Alu -229 81 2 2129 133 0 10 chr6 189039260 189039562 -239992 + AluSx SINE Alu 1 299 -13 2080 146 0 0 chr6 189040302 189040589 -238965 - AluSx SINE Alu -13 299 13 216 289 169 12 chr6 189040967 189041050 -238504 - MER5B DNA MER1_type -4 174 79 1347 157 118 11 chr6 189041528 189041808 -237746 + MER4B LTR ERV1 1 310 -300 1244 133 15 0 chr6 189041810 189042005 -237549 + MER4E LTR ERV1 569 766 0 388 177 15 39 chr6 189043292 189043422 -236132 + GA-rich Low_complexity Low_complexity 4 130 0 230 220 17 0 chr6 189044045 189044104 -235450 - L1MC5 LINE L1 -59 7902 7843 234 268 80 49 chr6 189044319 189044543 -235011 - L1MC5 LINE L1 -233 7728 7498 302 175 18 0 chr6 189044543 189044600 -234954 - MER58 DNA MER1_type 0 2420 2363 309 330 56 52 chr6 189044601 189045176 -234378 + L1M4 LINE L1 4028 4604 -1542 846 143 8 0 chr6 189045469 189045588 -233966 + AluJb SINE Alu 1 120 -192 57 0 0 0 chr6 189045591 189045648 -233906 + AT_rich Low_complexity Low_complexity 1 57 0 2213 108 3 7 chr6 189046343 189046648 -232906 - AluSx SINE Alu -8 304 1 333 244 0 47 chr6 189046821 189046907 -232647 + L2 LINE L2 3185 3266 -6 23 0 0 0 chr6 189047086 189047109 -232445 + AT_rich Low_complexity Low_complexity 1 23 0 2418 105 0 0 chr6 189048745 189049050 -230504 - AluSx SINE Alu -7 305 1 747 86 0 0 chr6 189049051 189049144 -230410 - AluS SINE Alu -218 94 2 243 0 0 0 chr6 189049365 189049392 -230162 + (A)n Simple_repeat Simple_repeat 1 27 0 1024 116 7 0 chr6 189050116 189050254 -229300 + AluSq/x SINE Alu 1 139 -174 2160 136 10 0 chr6 189050255 189050556 -228998 + AluSx SINE Alu 7 310 -2 203 167 0 0 chr6 189051028 189051070 -228484 + A-rich Low_complexity Low_complexity 1 42 0 948 159 0 0 chr6 189051243 189051388 -228166 + FRAM SINE Alu 20 164 -12 336 261 73 56 chr6 189051403 189051798 -227756 + L1MEd LINE L1 855 1256 -4863 472 271 21 14 chr6 189051919 189052063 -227491 + MER92B LTR ERV1 1 145 -491 962 207 31 9 chr6 189052079 189052301 -227253 + L1MB3 LINE L1 5955 6181 -2 851 239 65 0 chr6 189052626 189052886 -226668 - L1M4 LINE L1 -1287 4928 4652 714 276 70 29 chr6 189052961 189053374 -226180 - L1MCa LINE L1 -4166 2230 1801 414 267 118 1 chr6 189053375 189053629 -225925 - L1MCa LINE L1 -4554 1711 1275 2178 92 7 0 chr6 189053644 189053958 -225596 - AluSc SINE Alu 0 320 5 405 232 24 8 chr6 189054096 189054221 -225333 - L1MB3 LINE L1 -2 6181 6055 1586 255 124 27 chr6 189054247 189054949 -224605 - L1MCa LINE L1 -5230 1166 397 287 311 33 40 chr6 189105349 189105500 -174054 - MIR SINE MIR -103 159 10 341 180 0 42 chr6 189106019 189106175 -173379 + MER53 DNA DNA 6 188 -1 2786 75 13 8 chr6 189107567 189107942 -171612 - L1PA8 LINE L1 -3 6169 5793 384 286 27 14 chr6 189108187 189108334 -171220 + MIR SINE MIR 38 186 -76 2177 115 24 48 chr6 189108440 189108813 -170741 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr6 189108920 189108948 -170606 + AT_rich Low_complexity Low_complexity 1 28 0 713 238 14 100 chr6 189109076 189109357 -170197 - MLT1J LTR MaLR -3 508 252 3735 141 7 0 chr6 189110385 189110975 -168579 - L1PA13 LINE L1 -1 6162 5569 865 228 88 68 chr6 189111082 189111625 -167929 - HAL1b LINE L1 -243 1105 552 2176 195 34 7 chr6 189111649 189112065 -167489 + Tigger2a DNA MER2_type 3 429 -5 266 338 56 41 chr6 189112154 189112420 -167134 - HAL1b LINE L1 -949 399 130 274 123 18 53 chr6 189112429 189112486 -167068 + MER116 DNA Mariner 1 55 -25 231 267 0 0 chr6 189112935 189112995 -166559 + CT-rich Low_complexity Low_complexity 3 62 0 1715 229 36 2 chr6 189113981 189114423 -165131 + MER70B LTR ERVL 20 476 -102 234 288 45 86 chr6 189115540 189115762 -163792 + L2 LINE L2 3008 3220 -52 3587 219 62 11 chr6 189117866 189118720 -160834 + Charlie1a DNA MER1_type 1 901 -1860 1635 164 3 27 chr6 189118720 189119012 -160542 - AluJo SINE Alu -18 294 10 3587 219 62 11 chr6 189119012 189119029 -160525 + Charlie1a DNA MER1_type 901 916 -539 216 0 0 0 chr6 189119238 189119262 -160292 + (A)n Simple_repeat Simple_repeat 1 24 0 2141 110 19 0 chr6 189119296 189119613 -159941 + L1PB1 LINE L1 5828 6150 -1 358 215 0 0 chr6 189120719 189120784 -158770 - MER94 DNA DNA -28 106 42 2154 131 16 0 chr6 189122483 189122788 -156766 + AluSx SINE Alu 1 310 -2 2358 80 3 26 chr6 189128834 189129146 -150408 + AluY SINE Alu 1 305 -6 2161 115 133 38 chr6 189130434 189130825 -148729 + MSTA LTR MaLR 1 428 0 411 21 0 0 chr6 189130851 189130899 -148655 + (TG)n Simple_repeat Simple_repeat 1 48 0 2358 44 0 3 chr6 189131243 189131536 -148018 + AluY SINE Alu 1 292 -19 183 402 0 11 chr6 189131715 189131802 -147752 + L2 LINE L2 3227 3312 -1 21 36 0 0 chr6 189132318 189132346 -147208 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 189132398 189132426 -147128 + AT_rich Low_complexity Low_complexity 1 28 0 1286 216 70 3 chr6 189133401 189133729 -145825 + L1PA16 LINE L1 5796 6162 -6 1826 106 38 38 chr6 189133740 189133863 -145691 + AluSg SINE Alu 1 123 -187 2041 94 3 29 chr6 189133863 189134172 -145382 + AluSp SINE Alu 1 301 -12 1826 106 38 38 chr6 189134172 189134341 -145213 + AluSg SINE Alu 122 293 -17 536 322 87 41 chr6 189134349 189134727 -144827 + L1MEd LINE L1 965 1445 -1045 622 228 80 21 chr6 189135231 189135468 -144086 - L1MC5 LINE L1 -101 7860 7610 283 316 51 10 chr6 189135508 189135606 -143948 + MER5A DNA MER1_type 88 189 0 192 222 0 188 chr6 189135827 189135866 -143688 + MIR SINE MIR 112 157 -105 2350 72 3 3 chr6 189135866 189136172 -143382 + AluY SINE Alu 1 306 -5 192 222 0 188 chr6 189136172 189136249 -143305 + MIR SINE MIR 157 206 -56 319 226 93 44 chr6 189136903 189137047 -142507 + MLT1I LTR MaLR 32 178 -231 254 260 41 0 chr6 189137213 189137286 -142268 + MLT1I LTR MaLR 322 397 -12 221 286 168 50 chr6 189137431 189137592 -141962 + MIR SINE MIR 34 213 -49 2423 78 0 0 chr6 189137869 189138177 -141377 - AluSx SINE Alu -1 311 4 1763 136 0 10 chr6 189138406 189138700 -140854 - AluSx SINE Alu 0 312 22 24 0 0 0 chr6 189138713 189138737 -140817 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr6 189139116 189139137 -140417 + AT_rich Low_complexity Low_complexity 1 21 0 1162 164 78 9 chr6 189139326 189139545 -140009 - MER46A DNA MER2_type -2 234 1 541 248 0 8 chr6 189139712 189139833 -139721 + MER58 DNA MER1_type 1 120 -221 2241 85 10 3 chr6 189139921 189140227 -139327 + AluSc SINE Alu 1 308 -1 210 91 0 0 chr6 189140419 189140452 -139102 + (TTAGGG)n Simple_repeat Simple_repeat 2 34 0 267 286 42 25 chr6 189140891 189141010 -138544 - HAL1 LINE L1 -629 1878 1758 2299 289 100 46 chr6 189141164 189143813 -135741 - L1ME3A LINE L1 -26 6144 3356 515 99 0 0 chr6 189143799 189143870 -135684 - L1MB8 LINE L1 -270 5908 5838 * 2124 105 3 6 chr6 189143882 189144196 -135358 - AluSq SINE Alu 0 313 1 21 57 0 0 chr6 189144464 189144499 -135055 + AT_rich Low_complexity Low_complexity 1 35 0 506 223 27 0 chr6 189144743 189144855 -134699 + L1MA10 LINE L1 6210 6324 -10 192 77 0 0 chr6 189145687 189145713 -133841 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 492 61 45 0 chr6 189145715 189145781 -133773 - AluSq/x SINE Alu -185 127 59 1900 111 0 0 chr6 189145781 189146043 -133511 - AluSx SINE Alu -50 262 1 338 298 30 23 chr6 189146123 189146254 -133300 + MIR SINE MIR 32 163 -99 1503 254 12 3 chr6 189146329 189146675 -132879 + LTR40a LTR ERVL 166 514 -5 967 201 19 46 chr6 189149528 189149787 -129767 - L1MB8 LINE L1 -7 6171 5920 520 216 24 0 chr6 189149799 189149924 -129630 + LTR33 LTR ERVL 394 521 0 190 324 53 69 chr6 189149937 189150184 -129370 - L2 LINE L2 -815 2499 2257 1714 209 67 5 chr6 189150538 189150911 -128643 - MSTD LTR MaLR 0 396 1 227 315 42 96 chr6 189150964 189151443 -128111 - L2 LINE L2 -1160 2154 1702 255 157 0 0 chr6 189151692 189151743 -127811 + GA-rich Low_complexity Low_complexity 1 51 0 2221 107 0 0 chr6 189152437 189152736 -126818 - AluSx SINE Alu -11 301 3 223 296 14 0 chr6 189154333 189154404 -125150 - MIR SINE MIR -99 163 92 367 139 25 0 chr6 189154831 189154910 -124644 - Charlie5 DNA MER1_type -33 2579 2499 2092 153 48 46 chr6 189155061 189155478 -124076 - LTR3 LTR ERVK -10 422 5 273 115 88 18 chr6 189158067 189158180 -121374 + (TCTA)n Simple_repeat Simple_repeat 4 124 0 194 149 75 0 chr6 189158201 189158268 -121286 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 429 326 27 23 chr6 189158766 189158987 -120567 - L2 LINE L2 0 3313 3092 1663 205 31 17 chr6 189159967 189160077 -119477 + MER46B DNA MER2_type 1 108 -2623 2896 70 0 0 chr6 189160077 189160432 -119122 - THE1A LTR MaLR 0 355 1 1663 205 31 17 chr6 189160432 189160677 -118877 + MER46B DNA MER2_type 108 236 0 479 231 127 18 chr6 189161028 189161249 -118305 + L1ME3A LINE L1 5919 6163 -7 239 256 37 0 chr6 189162144 189162226 -117328 + MER53 DNA DNA 1 85 -104 697 239 0 0 chr6 189164024 189164166 -115388 + FLAM_C SINE Alu 2 143 0 2345 42 28 0 chr6 189164250 189164539 -115015 + AluY SINE Alu 1 297 -14 2370 63 0 0 chr6 189164701 189165002 -114552 - AluY SINE Alu -10 301 1 426 281 69 79 chr6 189165013 189165355 -114199 - L1ME4a LINE L1 -164 5957 5620 1769 128 13 16 chr6 189165355 189165668 -113886 - AluSx SINE Alu 0 312 1 426 281 69 79 chr6 189165668 189165806 -113748 - L1ME4a LINE L1 -501 5620 5482 28 48 0 0 chr6 189165926 189165968 -113586 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr6 189166215 189166236 -113318 + AT_rich Low_complexity Low_complexity 1 21 0 531 0 0 0 chr6 189166926 189166985 -112569 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 183 42 0 0 chr6 189166985 189167009 -112545 + (TC)n Simple_repeat Simple_repeat 2 25 0 856 239 0 71 chr6 189167423 189167678 -111876 + MLT2D LTR ERVL 178 414 0 265 325 24 0 chr6 189167787 189167870 -111684 + MER5A DNA MER1_type 3 87 -102 385 284 200 7 chr6 189167903 189168058 -111496 + MIR SINE MIR 5 189 -73 1433 147 73 15 chr6 189169278 189169551 -110003 - AluJo SINE Alu -21 291 3 757 238 159 22 chr6 189170326 189170646 -108908 + MLT1A1 LTR MaLR 1 364 -1 185 229 0 0 chr6 189171082 189171117 -108437 + L2 LINE L2 3018 3052 -220 186 358 30 30 chr6 189171435 189171569 -107985 + MIR SINE MIR 78 211 -51 2212 74 7 0 chr6 189171966 189172262 -107292 - AluSx SINE Alu -14 298 1 2002 137 0 0 chr6 189174017 189174310 -105244 - AluSx SINE Alu -19 293 1 1416 159 19 11 chr6 189174594 189174858 -104696 + L1MC1 LINE L1 6053 6318 -15 1302 217 74 3 chr6 189174966 189175302 -104252 + L1MB7 LINE L1 5813 6172 -12 28 0 0 0 chr6 189176161 189176189 -103365 + AT_rich Low_complexity Low_complexity 1 28 0 2023 131 0 3 chr6 189176296 189176608 -102946 - AluSq SINE Alu -2 311 1 198 0 0 0 chr6 189176673 189176695 -102859 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1499 169 58 0 chr6 189176701 189176962 -102592 - AluJo SINE Alu -36 276 1 2145 72 0 4 chr6 189177605 189177916 -101638 - AluY SINE Alu 0 315 6 551 226 53 101 chr6 189178084 189178402 -101152 + L2 LINE L2 3011 3313 0 189 0 0 0 chr6 189179622 189179643 -99911 + (CCCTAA)n Simple_repeat Simple_repeat 2 22 0 1980 192 42 5 chr6 189184335 189184741 -94813 + MSTB LTR MaLR 6 426 0 247 338 37 52 chr6 189185754 189185890 -93664 - MIR SINE MIR -94 168 35 296 329 36 0 chr6 189186460 189186597 -92957 + MIR SINE MIR 99 240 -22 2622 90 11 3 chr6 189186795 189187161 -92393 - THE1C LTR MaLR -6 369 1 234 203 76 25 chr6 189187285 189187364 -92190 - MLT1I LTR MaLR -326 83 1 1520 87 5 0 chr6 189187384 189187593 -91961 + AluSp SINE Alu 100 309 0 183 162 0 0 chr6 189188625 189188662 -90892 + GA-rich Low_complexity Low_complexity 2 38 0 341 304 217 11 chr6 189188718 189188902 -90652 + MIR SINE MIR 4 225 -37 191 302 0 0 chr6 189189275 189189318 -90236 - L2 LINE L2 0 3313 3271 222 37 0 0 chr6 189189730 189189757 -89797 + (GGGTG)n Simple_repeat Simple_repeat 4 30 0 814 317 169 15 chr6 189190457 189191278 -88276 + L2 LINE L2 1608 2555 -759 539 295 261 10 chr6 189192773 189193176 -86378 + L1MC4a LINE L1 5398 5901 -1907 200 204 19 37 chr6 189193639 189193693 -85861 + L2 LINE L2 3261 3313 0 431 305 65 0 chr6 189194896 189195050 -84504 - MIR SINE MIR -16 246 83 24 0 0 0 chr6 189195184 189195208 -84346 + AT_rich Low_complexity Low_complexity 1 24 0 570 191 15 52 chr6 189195836 189195869 -83685 - FLAM_A SINE Alu -180 131 98 2500 81 29 0 chr6 189195869 189196214 -83340 + THE1A LTR MaLR 1 355 0 11636 83 2 4 chr6 189196214 189197798 -81756 + THE1A-int LTR MaLR 1 1580 0 2411 127 3 0 chr6 189197798 189198152 -81402 + THE1A LTR MaLR 1 355 0 570 191 15 52 chr6 189198152 189198252 -81302 - FLAM_A SINE Alu -210 101 1 1568 144 69 26 chr6 189199507 189199979 -79575 - MER4B LTR ERV1 0 766 3 187 294 129 12 chr6 189200152 189200237 -79317 - MIR SINE MIR -80 182 88 2200 118 3 0 chr6 189200296 189200585 -78969 + AluSx SINE Alu 1 290 -22 402 57 0 0 chr6 189200585 189200638 -78916 + (TA)n Simple_repeat Simple_repeat 2 54 0 234 0 0 0 chr6 189200637 189200663 -78891 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 282 206 0 0 chr6 189202623 189202691 -76863 + CT-rich Low_complexity Low_complexity 1 68 0 238 263 152 30 chr6 189205014 189205113 -74441 + MIR SINE MIR 31 141 -121 745 295 92 16 chr6 189206169 189206538 -73016 - MLT2C1 LTR ERVL 0 397 1 2780 246 85 15 chr6 189206538 189207381 -72173 - ERVL-C1 LTR ERVL -8 5756 4855 3617 244 63 43 chr6 189207554 189207655 -71899 + L1ME2 LINE L1 3908 4006 -2164 821 142 0 0 chr6 189207655 189207782 -71772 + FLAM_A SINE Alu 1 127 -6 3617 244 63 43 chr6 189207782 189209214 -70340 + L1ME2 LINE L1 4006 5474 -696 1121 304 107 16 chr6 189209220 189209790 -69764 + L1ME2 LINE L1 5543 6164 0 291 261 77 23 chr6 189214100 189214230 -65324 + MIR SINE MIR 12 148 -114 2169 229 59 37 chr6 189217126 189217742 -61812 - MER50 LTR ERV1 0 734 100 2430 81 0 0 chr6 189217742 189218049 -61505 - AluY SINE Alu -4 307 1 2169 229 59 37 chr6 189218049 189218131 -61423 - MER50 LTR ERV1 -634 100 21 244 274 118 10 chr6 189218146 189218248 -61306 - MLT1K LTR MaLR -136 452 340 2284 116 0 0 chr6 189218588 189218882 -60672 - AluSx SINE Alu -18 294 1 2935 162 16 6 chr6 189218883 189219431 -60123 - L1MC1 LINE L1 -9 6324 5771 5112 228 44 13 chr6 189219431 189220477 -59077 - L1MC4 LINE L1 -743 5403 4771 297 0 0 0 chr6 189220477 189220510 -59044 + (TA)n Simple_repeat Simple_repeat 2 34 0 5112 228 44 13 chr6 189220510 189221343 -58211 - L1MC4 LINE L1 -1375 4771 3965 184 333 53 13 chr6 189223092 189223167 -56387 + MIR SINE MIR 82 159 -103 354 127 13 69 chr6 189224045 189224132 -55422 + MLT1F LTR MaLR 461 595 0 1156 294 41 35 chr6 189224320 189224929 -54625 - L1M4 LINE L1 -1898 4248 3636 264 177 32 0 chr6 189225043 189225105 -54449 + (TG)n Simple_repeat Simple_repeat 2 65 0 313 368 118 23 chr6 189226179 189226745 -52809 + L2 LINE L2 2042 2661 -653 243 245 129 49 chr6 189227067 189227230 -52324 + MLT1K LTR MaLR 401 576 -12 298 298 63 51 chr6 189227239 189227494 -52060 + L2 LINE L2 2700 2957 -357 275 312 97 43 chr6 189227594 189227780 -51774 + L2 LINE L2 3118 3313 0 919 171 6 6 chr6 189227780 189228334 -51220 + (TGGA)n Simple_repeat Simple_repeat 1 554 0 842 172 7 0 chr6 189228351 189228641 -50913 + (TGGA)n Simple_repeat Simple_repeat 1 291 0 189 0 0 0 chr6 189229769 189229790 -49764 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 198 0 0 0 chr6 189229883 189229905 -49649 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 389 266 148 52 chr6 189230031 189230109 -49445 + MLT1J LTR MaLR 34 103 -408 2251 142 83 0 chr6 189230109 189230504 -49050 + MSTA LTR MaLR 1 428 0 389 266 148 52 chr6 189230504 189230530 -49024 + MLT1J LTR MaLR 103 125 -386 981 213 22 99 chr6 189230530 189230934 -48620 + MLT1A2 LTR MaLR 2 374 0 389 266 148 52 chr6 189230934 189230976 -48578 + MLT1J LTR MaLR 125 162 -349 2830 203 68 32 chr6 189230976 189231421 -48133 + MER44D DNA MER2_type 1 354 -2133 2804 23 3 0 chr6 189231421 189231731 -47823 - AluY SINE Alu 0 311 1 2830 203 68 32 chr6 189231731 189231993 -47561 + MER44D DNA MER2_type 354 605 0 389 266 148 52 chr6 189231993 189232149 -47405 + MLT1J LTR MaLR 162 367 -144 204 97 0 0 chr6 189232202 189232233 -47321 + (TG)n Simple_repeat Simple_repeat 1 31 0 536 238 99 48 chr6 189233177 189233450 -46104 + MER39 LTR ERV1 420 706 -1 267 218 77 0 chr6 189235723 189235801 -43753 + MLT1H LTR MaLR 76 159 -390 313 201 39 136 chr6 189236155 189236309 -43245 - L1ME4a LINE L1 -53 6068 5930 317 220 8 91 chr6 189236422 189236554 -43000 - L1ME4a LINE L1 -386 5735 5615 190 239 28 28 chr6 189237512 189237583 -41971 - L2 LINE L2 -247 3066 2996 198 248 99 0 chr6 189238631 189238732 -40822 - L2 LINE L2 -377 2936 2826 5939 167 71 3 chr6 189239059 189240209 -39345 + Tigger3b DNA MER2_type 2 1230 -1 2232 105 29 10 chr6 189240335 189240641 -38913 - AluSx SINE Alu 0 312 1 247 266 16 0 chr6 189240721 189240785 -38769 - MER113 DNA MER1_type? -1 520 456 252 298 18 0 chr6 189240902 189241016 -38538 - MER113 DNA MER1_type? -399 122 7 462 88 0 0 chr6 189241488 189241556 -37998 + (TC)n Simple_repeat Simple_repeat 1 68 0 1264 84 0 0 chr6 189241556 189241711 -37843 - AluSg/x SINE Alu -31 281 127 529 139 33 39 chr6 189242947 189243127 -36427 + (CA)n Simple_repeat Simple_repeat 1 179 0 334 311 223 0 chr6 189244046 189244252 -35302 - MIR SINE MIR 0 262 11 251 214 14 43 chr6 189244858 189244928 -34626 + MLT1J2 LTR MaLR 80 147 -303 2128 88 16 31 chr6 189245103 189245421 -34133 - AluSq SINE Alu 0 313 1 409 286 108 50 chr6 189247591 189247850 -31704 + HAL1b LINE L1 388 661 -687 384 119 0 0 chr6 189247860 189247919 -31635 + (TC)n Simple_repeat Simple_repeat 2 60 0 1723 158 3 25 chr6 189247937 189248221 -31333 + AluJo SINE Alu 1 278 -34 2077 112 11 3 chr6 189248252 189248538 -31016 + AluSg SINE Alu 1 288 -22 870 43 17 0 chr6 189248845 189248960 -30594 + LTR12 LTR ERV1 169 285 -429 300 244 11 0 chr6 189248960 189249050 -30504 + LTR30 LTR ERV1 552 642 -80 740 108 0 0 chr6 189249051 189249153 -30401 + LTR12 LTR ERV1 480 581 -133 326 219 0 0 chr6 189249238 189249311 -30243 + MLT1J1 LTR MaLR 249 321 -125 464 273 118 31 chr6 189249737 189250026 -29528 + L1MEd LINE L1 914 1227 -4892 2125 135 6 3 chr6 189250139 189250451 -29103 + AluSq SINE Alu 1 313 0 206 255 0 0 chr6 189250728 189250779 -28775 + (TAA)n Simple_repeat Simple_repeat 2 52 0 207 0 0 0 chr6 189251056 189251079 -28475 + (A)n Simple_repeat Simple_repeat 1 23 0 784 290 60 0 chr6 189251674 189251974 -27580 + L1ME4a LINE L1 5614 5931 -190 237 178 0 0 chr6 189252355 189252400 -27154 + T-rich Low_complexity Low_complexity 1 45 0 373 379 50 0 chr6 189253225 189253423 -26131 - MIR SINE MIR -46 216 9 417 258 0 0 chr6 189254663 189254826 -24728 + (CA)n Simple_repeat Simple_repeat 1 163 0 216 277 0 0 chr6 189254886 189254969 -24585 + (CA)n Simple_repeat Simple_repeat 2 84 0 401 340 0 13 chr6 189254971 189255121 -24433 + (CATATA)n Simple_repeat Simple_repeat 6 153 0 249 309 0 0 chr6 189255122 189255297 -24257 + (CA)n Simple_repeat Simple_repeat 1 175 0 326 274 0 6 chr6 189255328 189255503 -24051 + (CA)n Simple_repeat Simple_repeat 1 174 0 2207 115 133 13 chr6 189256930 189257312 -22242 + MSTA LTR MaLR 1 428 0 723 176 0 46 chr6 189258780 189258995 -20559 + AluJb SINE Alu 2 302 -10 1325 160 93 42 chr6 189260204 189260560 -18994 - MLT1A2 LTR MaLR 0 374 1 1811 154 0 39 chr6 189263266 189263572 -15982 - AluJo SINE Alu -13 299 6 334 172 123 153 chr6 189264204 189264367 -15187 + MER5B DNA MER1_type 21 178 0 219 288 152 0 chr6 189264587 189264719 -14835 + L3 LINE CR1 653 804 -773 205 288 15 0 chr6 189264824 189264890 -14664 - MIR SINE MIR 0 262 196 221 267 17 0 chr6 189264896 189264956 -14598 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 2593 100 0 16 chr6 189264962 189265332 -14222 + THE1B LTR MaLR 1 364 0 212 263 232 0 chr6 189265358 189265453 -14101 - MIR SINE MIR -125 137 21 422 370 26 37 chr6 189265698 189265971 -13583 + L3 LINE CR1 1141 1410 -167 495 330 31 27 chr6 189266263 189266444 -13110 + MIR SINE MIR 1 185 -77 2190 124 0 0 chr6 189266444 189266734 -12820 - AluY SINE Alu -21 290 1 495 330 31 27 chr6 189266734 189266813 -12741 + MIR SINE MIR 185 262 0 214 381 0 0 chr6 189268076 189268249 -11305 + G-rich Low_complexity Low_complexity 4 176 0 1070 253 92 6 chr6 189273148 189273508 -6046 - L1MB3 LINE L1 -3 6180 5790 1939 213 93 8 chr6 189273821 189274315 -5239 - MER21B LTR ERV1 -138 725 190 572 203 68 30 chr6 189274376 189274509 -5045 - MIR SINE MIR -52 210 73 254 333 11 0 chr6 189274633 189274720 -4834 + (TG)n Simple_repeat Simple_repeat 1 88 0 2457 87 0 3 chr6 189276719 189277029 -2525 + AluSc SINE Alu 1 309 0 624 121 0 10 chr6 189278231 189278330 -1224 + MER4A LTR ERV1 1 98 -566 2150 121 3 3 chr6 189278345 189278642 -912 + AluSx SINE Alu 1 297 -15 1662 124 162 76 chr6 189278654 189279024 -530 + MER4A LTR ERV1 261 662 -2